BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 537021.9.peg.753_1
         (1033 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done


Results from round 1


>gi|315122785|ref|YP_004063274.1| DNA polymerase III subunit alpha [Candidatus Liberibacter
            solanacearum CLso-ZC1]
 gi|313496187|gb|ADR52786.1| DNA polymerase III subunit alpha [Candidatus Liberibacter
            solanacearum CLso-ZC1]
          Length = 1226

 Score = 1889 bits (4894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 896/1034 (86%), Positives = 969/1034 (93%), Gaps = 1/1034 (0%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            L Q +E+SP FVHLQVHSSYSLLEGALSLNNILDK  ADQQPAIAITDTNNLF ALEFSQ
Sbjct: 15   LNQQVERSPGFVHLQVHSSYSLLEGALSLNNILDKAIADQQPAIAITDTNNLFGALEFSQ 74

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            KAC AGIQPIIGCQ++IDMQD L++T++GK+ FP +PSIVLLVS AEGYQRLIELVSRMY
Sbjct: 75   KACLAGIQPIIGCQIEIDMQDGLEVTHKGKSFFPELPSIVLLVSKAEGYQRLIELVSRMY 134

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            LL+QG +SVRI  SWLQEIGTEGLIMLTGGSSG IDRAF FN+ Q+AEKRLL+FK +FG+
Sbjct: 135  LLNQGHKSVRIYFSWLQEIGTEGLIMLTGGSSGSIDRAFLFNNPQIAEKRLLSFKNIFGN 194

Query: 181  RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            RLYVNLQRHRGYDRYRESQV+QLAY HELPLVATNN+LFLS+EDY+AHDVLMAVAHSTV+
Sbjct: 195  RLYVNLQRHRGYDRYRESQVIQLAYKHELPLVATNNALFLSQEDYDAHDVLMAVAHSTVI 254

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            SQ+DRPRVTPDHYLKNR+EM+S+F+DLPEAL+NTVEIARRCSFILQVH PILPRFI+KEC
Sbjct: 255  SQEDRPRVTPDHYLKNRAEMLSMFADLPEALDNTVEIARRCSFILQVHKPILPRFIDKEC 314

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            DD +K EENELR KA+ GLE RL+QG IAKGY AQDYR+RLDFEL+VIARMKFSGYFLIV
Sbjct: 315  DDFEKIEENELRTKAIEGLETRLSQGIIAKGYSAQDYRKRLDFELDVIARMKFSGYFLIV 374

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI
Sbjct: 375  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 434

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQDRRDEVI+YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP
Sbjct: 435  DFCQDRRDEVIQYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 494

Query: 481  NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            N+PAHPVSL QAIADDSRF+EA L DP VDRLLEIS KLEGLYRHASTHAAGIVIGDRPL
Sbjct: 495  NNPAHPVSLKQAIADDSRFQEAILDDPFVDRLLEISLKLEGLYRHASTHAAGIVIGDRPL 554

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            SQL+PMYRDVRSD+PVTQFNMKW+EKAGL+KFDFLGLKTLT+LQKSLD L QRG+KVDLS
Sbjct: 555  SQLIPMYRDVRSDIPVTQFNMKWVEKAGLVKFDFLGLKTLTVLQKSLDLLEQRGIKVDLS 614

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            LIPFDDHETYHLLT KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI+NI 
Sbjct: 615  LIPFDDHETYHLLTKKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIENIT 674

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +YNNRKNGKEKIVSIHPLID +LKETQGVI+YQEQVMQIAQLLSGYSLSEADVLRRAMGK
Sbjct: 675  IYNNRKNGKEKIVSIHPLIDSILKETQGVIVYQEQVMQIAQLLSGYSLSEADVLRRAMGK 734

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KIKEEMDKQKERF+SGASKNG+S  +AVNIFELLAKFADYGFNKSHAAAYAVISY+TAWM
Sbjct: 735  KIKEEMDKQKERFVSGASKNGLSNIMAVNIFELLAKFADYGFNKSHAAAYAVISYRTAWM 794

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI+ PSV T CVDF+VG+  IYYSL
Sbjct: 795  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIILPSVQTSCVDFEVGEKCIYYSL 854

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AAIKGVGT TA HIM   ADKPF+SLEDFCSRVDSK+LNRRVLESL+FAGALDCFGYSR 
Sbjct: 855  AAIKGVGTITAHHIMTVRADKPFESLEDFCSRVDSKQLNRRVLESLIFAGALDCFGYSRE 914

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            QL QSLDNIQKYAQW+EKNRTN   NIF  E+G+FS+KI+LE+FSVENSS RFE+E+RVL
Sbjct: 915  QLYQSLDNIQKYAQWIEKNRTNDQANIFVDEEGSFSEKISLEEFSVENSSARFEHERRVL 974

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GFYFSGHPLDVYK IL+KMGIK YEES+A+++ + IRLA MV+SK+QKKTRKGSRIGWVT
Sbjct: 975  GFYFSGHPLDVYKAILQKMGIKSYEESIASVKESIIRLAVMVMSKEQKKTRKGSRIGWVT 1034

Query: 1020 FSEPAKEYEANFFP 1033
            FSEP KEYE  FFP
Sbjct: 1035 FSEPDKEYEGIFFP 1048


>gi|327194832|gb|EGE61666.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CNPAF512]
          Length = 1165

 Score = 1355 bits (3506), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 644/1031 (62%), Positives = 808/1031 (78%), Gaps = 6/1031 (0%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P F+HL+VHS+YSLLEGAL L  IL K A D QPAIAITDTNNLF ALEFSQKA   G+
Sbjct: 16   TPGFIHLRVHSAYSLLEGALPLKKILYKAAGDNQPAIAITDTNNLFVALEFSQKAMDDGL 75

Query: 68   QPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            QPIIGCQ+ IDM+D L+   +G +     +PSIVLL +T  GY+RL++LVSR YL     
Sbjct: 76   QPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATEAGYERLVDLVSRAYLGGDSN 135

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q++ I  SWL+E GTEGLI LTG  +GP+D A        AE RLLT K+LFGDRLYV L
Sbjct: 136  QAIHIRASWLEEAGTEGLIALTGALTGPVDAAIREGHPAQAEARLLTLKRLFGDRLYVEL 195

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            QRH  YD+  E ++V LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS   R 
Sbjct: 196  QRHGTYDKRHEQKIVGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R+TPDHYLK+R+EM  +F+DLPEALENT+EIARRCSF+L+   PILPRF     D  + E
Sbjct: 256  RLTPDHYLKSRAEMAKLFADLPEALENTIEIARRCSFVLKTRKPILPRFTGATDDAEEAE 315

Query: 307  EENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  LR +AV GL++RL+   ++ GY  +DYR+RL+FEL+VI RM+F GYFLIVADFI
Sbjct: 316  RAEAGELRRQAVEGLDMRLSTLGMSPGYEEKDYRERLEFELSVIERMRFPGYFLIVADFI 375

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 376  KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA
Sbjct: 436  DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +P  L +AI ++ + +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV
Sbjct: 496  NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP 
Sbjct: 556  PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGISVDLAAIPL 615

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN 
Sbjct: 616  DDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNA 675

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK 
Sbjct: 676  RKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMD+Q+ERF+ GA KNG+SK  A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+MK HY
Sbjct: 736  EMDQQRERFVDGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTL+M N EK+  F QDA++  I+++ PSV T    F+ GDNRIYY+LAA+K
Sbjct: 796  PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRQFETGDNRIYYALAALK 855

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG +   HI+E   D PF  +EDFC R+D +++NRRVLESL++AGA DCFG  R QL  
Sbjct: 856  GVGESAVDHIVEVRGDTPFAGIEDFCLRIDPRQVNRRVLESLIYAGAFDCFGTDRAQLSA 915

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             LD I  YAQ  ++N+ +   +IF     +  +KI L  FS   +S R   E +VLGFY 
Sbjct: 916  GLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKIALPPFSPWLASERLLKEFQVLGFYL 975

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            + HPLD Y  IL+KM ++ + E  A I+   +N RLA  V+SKQ++KTR G+++G + FS
Sbjct: 976  TAHPLDSYSNILQKMRVQTFAEFSAAIKQGASNARLAGTVISKQERKTRTGNKMGIIVFS 1035

Query: 1022 EPAKEYEANFF 1032
            + + ++EA  F
Sbjct: 1036 DSSGQFEAVLF 1046


>gi|190891309|ref|YP_001977851.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
 gi|190696588|gb|ACE90673.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
          Length = 1165

 Score = 1352 bits (3498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 643/1031 (62%), Positives = 807/1031 (78%), Gaps = 6/1031 (0%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P F+HL+VHS+YSLLEGAL L  IL K A D QPAIAITDTNNLF ALEFSQKA   G+
Sbjct: 16   TPGFIHLRVHSAYSLLEGALPLKKILYKAAGDNQPAIAITDTNNLFVALEFSQKAMDDGL 75

Query: 68   QPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            QPIIGCQ+ IDM+D L+   +G +     +PSIVLL +T  GY+RL++LVSR YL     
Sbjct: 76   QPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATEAGYERLVDLVSRAYLGGDSN 135

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q++ I  SWL+E GTEGLI LTG  +GP+D A     +  AE RLL  K+LFGDRLYV L
Sbjct: 136  QAIHIRASWLEEAGTEGLIALTGALTGPVDAAIREGHTAQAEARLLMLKRLFGDRLYVEL 195

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            QRH  YD+  E ++V LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS   R 
Sbjct: 196  QRHGTYDKPHEQKIVGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R+TPDHYLK+R+EM  +F+DLPEALENT+EIARRCSF+L+   PILPRF     D  + E
Sbjct: 256  RLTPDHYLKSRAEMAKLFADLPEALENTIEIARRCSFVLKTRKPILPRFTGATDDAEEAE 315

Query: 307  EENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  LR +AV GL+ RL+   ++ GY  +DYR+RL+FEL+VI RM+F GYFLIVADFI
Sbjct: 316  RAEAGELRRQAVEGLDRRLSTLGMSPGYEEKDYRERLEFELSVIERMRFPGYFLIVADFI 375

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 376  KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA
Sbjct: 436  DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +P  L +AI ++ + +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV
Sbjct: 496  NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP 
Sbjct: 556  PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGISVDLAAIPL 615

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN 
Sbjct: 616  DDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNA 675

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK 
Sbjct: 676  RKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMD+Q+ERF+ GA KNG+SK  A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+MK HY
Sbjct: 736  EMDQQRERFVDGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTL+M N EK+  F QDA++  I+++ PSV T    F+ GDNRIYY+LAA+K
Sbjct: 796  PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRQFETGDNRIYYALAALK 855

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG +   HI+E   D PF  +EDFC R+D +++NRRVLESL++AGA DCFG  R QL  
Sbjct: 856  GVGESAVDHIVEVRGDTPFAGIEDFCLRIDPRQVNRRVLESLIYAGAFDCFGTDRAQLSA 915

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             LD I  YAQ  ++N+ +   +IF     +  +KI L  FS   +S R   E +VLGFY 
Sbjct: 916  GLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKIALPPFSPWLASERLLKEFQVLGFYL 975

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            + HPLD Y  IL+KM ++ + E  A I+   +N RLA  V+SKQ++KTR G+++G + FS
Sbjct: 976  TAHPLDSYNNILQKMRVQTFAEFSAAIKQGASNARLAGTVISKQERKTRTGNKMGIIVFS 1035

Query: 1022 EPAKEYEANFF 1032
            + + ++EA  F
Sbjct: 1036 DSSGQFEAVLF 1046


>gi|116251489|ref|YP_767327.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv. viciae
            3841]
 gi|115256137|emb|CAK07218.1| putative DNA polymerase III alpha subunit [Rhizobium leguminosarum
            bv. viciae 3841]
          Length = 1165

 Score = 1351 bits (3496), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 642/1031 (62%), Positives = 808/1031 (78%), Gaps = 6/1031 (0%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P F+HL+VHS+YSLLEGAL L  IL K   D QPAIAITDTNNLF ALEFSQKA   G+
Sbjct: 16   TPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNLFVALEFSQKAMEDGL 75

Query: 68   QPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            QPIIGCQ+ IDM+D L+   +G +     +PSIVLL +T  GY+RL++LVSR YL  +  
Sbjct: 76   QPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATDAGYERLVDLVSRAYLGGESN 135

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q+V I  SWL+E GTEGLI L+G  +GP+D A        AE RLLT K+LFGDRLYV L
Sbjct: 136  QAVHISASWLEEAGTEGLIALSGALTGPVDVAIKEGHPTQAEARLLTLKRLFGDRLYVEL 195

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            QRH  YD+  E +++ LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS   R 
Sbjct: 196  QRHGTYDKRHEQKIIGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R+TPDHYLK+R+EMV +F+DLPEALENT+EIA RCSF+L+   PILPRF     D  + E
Sbjct: 256  RLTPDHYLKSRAEMVKLFADLPEALENTIEIATRCSFVLKTRKPILPRFTGATDDAEEAE 315

Query: 307  EENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  LR +AV GL++RL+   ++ GY  +DYR+RLDFEL+VI RM+F GYFLIVADFI
Sbjct: 316  RAEASELRRQAVEGLDMRLSTLGMSPGYEEKDYRERLDFELSVIERMRFPGYFLIVADFI 375

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 376  KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA
Sbjct: 436  DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +P  L +AI ++ + +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV
Sbjct: 496  NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+ G+K+DL+ IP 
Sbjct: 556  PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKLGIKIDLAAIPL 615

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN 
Sbjct: 616  DDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNA 675

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK 
Sbjct: 676  RKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMD+Q+ERF+ GA KNG+SK  A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+MK HY
Sbjct: 736  EMDQQRERFVVGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTL+M N EK+  F QDA++  I+++ PSV T    F+ GDNRIYY+LAA+K
Sbjct: 796  PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHFETGDNRIYYALAALK 855

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG +   HI+E   DKPF S+EDFC R+D +++NRRVLESL++AGA DCF   R QL  
Sbjct: 856  GVGESAVDHIVEVRGDKPFASIEDFCLRIDPRQVNRRVLESLIYAGAFDCFDMDRAQLAA 915

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             LD +  YAQ  ++N+ +   +IF     +  +KI+L  FS    S R   E +VLGFY 
Sbjct: 916  GLDRVLGYAQRAQENKLSGQSDIFGSTLTSGPEKISLPPFSPWLPSERLLKEFQVLGFYL 975

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            + HPLD Y  IL+KM ++ + E  A I+    N RLA  V+SKQ++KTR G+++G + FS
Sbjct: 976  TAHPLDSYNNILQKMRVQTFAEFSAAIKQGAANARLAGTVISKQERKTRTGNKMGIIVFS 1035

Query: 1022 EPAKEYEANFF 1032
            + + ++EA  F
Sbjct: 1036 DSSGQFEAVLF 1046


>gi|241204110|ref|YP_002975206.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv.
            trifolii WSM1325]
 gi|240858000|gb|ACS55667.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM1325]
          Length = 1165

 Score = 1350 bits (3495), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 642/1031 (62%), Positives = 807/1031 (78%), Gaps = 6/1031 (0%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P F+HL+VHS+YSLLEGAL L  IL K   D QPAIAITDTNNLF ALEFSQKA   G+
Sbjct: 16   TPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNLFVALEFSQKAMEEGL 75

Query: 68   QPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            QPIIGCQ+ IDM D L+   +G +     +P+IVLL +T  GY+RL++LVSR YL  +  
Sbjct: 76   QPIIGCQVSIDMGDGLETEKRGGQQALVKLPAIVLLAATDAGYERLVDLVSRAYLGGESN 135

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q+V I  SWL+E GTEGLI LTG  +GP+D A        AE RLLT K+LFGDRLYV L
Sbjct: 136  QAVHISASWLEEAGTEGLIALTGALTGPVDVAIKEGHPAQAEARLLTLKRLFGDRLYVEL 195

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            QRH  YD+  E +++ LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS   R 
Sbjct: 196  QRHGTYDKRHEQKIIGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R+TPDHYLK+R+EMV +F+DLPEALENT+EIA RCSF+L+   PILPRF     D  + E
Sbjct: 256  RLTPDHYLKSRAEMVKLFADLPEALENTIEIATRCSFVLKTRKPILPRFTGATDDAEEAE 315

Query: 307  EENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  LR +AV GL++RLA   ++ GY  +DYR+RLDFEL+VI RM+F GYFLIVADFI
Sbjct: 316  RAEASELRRQAVEGLDMRLATLGMSAGYEEKDYRERLDFELSVIERMRFPGYFLIVADFI 375

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 376  KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA
Sbjct: 436  DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +P  L +AI ++ + +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV
Sbjct: 496  NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+ GVKVDL+ IP 
Sbjct: 556  PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKLGVKVDLAAIPL 615

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN 
Sbjct: 616  DDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNA 675

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK 
Sbjct: 676  RKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMD+Q+ERF+ GA +NG+SK  A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+MK HY
Sbjct: 736  EMDQQRERFVVGAVRNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTL+M N EK+  F QDA++  I+++ PSV +    F+ GDNRIYY+LAA+K
Sbjct: 796  PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQSSFRHFETGDNRIYYALAALK 855

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG +   HI+E   DKPF S+EDFC R+D +++NRRVLESL++AGA DCF   R +L  
Sbjct: 856  GVGESAVDHIVEVRGDKPFASIEDFCLRIDPRQVNRRVLESLIYAGAFDCFDMDRAELAA 915

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             LD +  YAQ  ++N+ +   +IF     +  +KI+L  FS    S R   E +VLGFY 
Sbjct: 916  GLDRVLGYAQRAQENKLSGQSDIFGSTLTSGPEKISLPPFSPWLPSERLLKEFQVLGFYL 975

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            + HPLD Y  IL+KM ++ + E  A I+    N RLA  V+SKQ++KTR G+++G + FS
Sbjct: 976  TAHPLDSYNNILQKMRVQTFAEFSAAIKQGAANARLAGTVISKQERKTRTGNKMGIIVFS 1035

Query: 1022 EPAKEYEANFF 1032
            + + ++EA  F
Sbjct: 1036 DSSGQFEAVLF 1046


>gi|86357261|ref|YP_469153.1| DNA polymerase III subunit alpha [Rhizobium etli CFN 42]
 gi|86281363|gb|ABC90426.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42]
          Length = 1165

 Score = 1350 bits (3494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 643/1031 (62%), Positives = 809/1031 (78%), Gaps = 6/1031 (0%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P F+HL+VHS+YSLLEGAL L  IL K   D QPAIAITDTNNLF ALEFSQKA   G+
Sbjct: 16   TPGFIHLRVHSAYSLLEGALPLKKILYKATGDNQPAIAITDTNNLFVALEFSQKAMDEGL 75

Query: 68   QPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            QPIIGCQ+ IDM+D L+   +G +     +PSIVLL +T  GY+RL++LVSR YL     
Sbjct: 76   QPIIGCQVSIDMEDGLESEKRGGQQALIKLPSIVLLAATEAGYERLVDLVSRAYLGGDSN 135

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q+V I  SWL+E GTEGLI LTG  +GP+D A        AE RLLT K+LFGDRLYV L
Sbjct: 136  QAVHIRASWLEEAGTEGLIALTGALTGPVDAAVREGHPAQAEARLLTLKRLFGDRLYVEL 195

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            QRH  YD+  E ++V+LAYTH+LPLVATN + F + +DY+AHD LMAVAH+ +VS   R 
Sbjct: 196  QRHGTYDKRHEQKIVRLAYTHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R+TPDHYLK+R+EM  +F+DLPEALENT+EIA+RCSF+L+   PILPRF     D  + E
Sbjct: 256  RLTPDHYLKSRAEMARLFADLPEALENTIEIAKRCSFVLKTRKPILPRFTGATDDAEEAE 315

Query: 307  EENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  LR +AV GL++RLA   ++ GY  +DYR+RL+FEL+VI RM+F GYFLIV+DFI
Sbjct: 316  RAEAGELRRQAVEGLDMRLATLGMSPGYEEKDYRERLEFELSVIERMRFPGYFLIVSDFI 375

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 376  KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA
Sbjct: 436  DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +P  L +AI ++ + +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV
Sbjct: 496  NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP 
Sbjct: 556  PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGINVDLAAIPL 615

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN 
Sbjct: 616  DDKPTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPVYNA 675

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+E++ SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK 
Sbjct: 676  RKHGEEEVESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMD+Q+ERF+ GA KNG+ K  A  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HY
Sbjct: 736  EMDQQRERFVEGAVKNGVKKPQADVIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTL+M N EK+  F QDA++  I+++ PSV T    F+ GDNRIYY+LAA+K
Sbjct: 796  PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHFETGDNRIYYALAALK 855

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG +   HI+E   DKPF S+EDFC R+D +++NRRVLESL++AGA DCFG  R QL  
Sbjct: 856  GVGESAVDHIVEVRGDKPFASIEDFCLRIDPRQVNRRVLESLIYAGAFDCFGTDRAQLAA 915

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             LD I  YAQ  ++N+ +   +IF     +  +KI+L  +S   +S R   E +VLGFY 
Sbjct: 916  GLDRILGYAQRAQENKLSGQSDIFGSALNSGPEKISLPPYSPWLASERLLKEFQVLGFYL 975

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            + HPLD Y  IL+KM ++ + E  A I+    N RLA  V+SKQ++KTR G+++G + FS
Sbjct: 976  TAHPLDSYNNILQKMRVQTFAEFSAAIKQGAANARLAGTVISKQERKTRTGNKMGIIVFS 1035

Query: 1022 EPAKEYEANFF 1032
            + + ++EA  F
Sbjct: 1036 DSSGQFEAVLF 1046


>gi|209548886|ref|YP_002280803.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv.
            trifolii WSM2304]
 gi|209534642|gb|ACI54577.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM2304]
          Length = 1165

 Score = 1347 bits (3487), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 641/1031 (62%), Positives = 804/1031 (77%), Gaps = 6/1031 (0%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P F+HL+VHS+YSLLEGAL L  IL K   D QPAIAITDTNNLF ALEFSQKA   G+
Sbjct: 16   TPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNLFIALEFSQKAMDDGL 75

Query: 68   QPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            QPIIGCQ+ IDM+D L+   +G +     +PSIVLL +T  GY+RL+++VSR YL  +  
Sbjct: 76   QPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATDAGYERLVDVVSRAYLGGESN 135

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q++ I  SWL+E GTEGLI LTG  +GP+D A         E RLL  K+LFGDRLYV L
Sbjct: 136  QAIHIRASWLEEAGTEGLIALTGALTGPVDAAIKEGHPAQGEARLLALKRLFGDRLYVEL 195

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            QRH  YD+  E ++V LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS   R 
Sbjct: 196  QRHGTYDKRHEQKIVGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R+TPDHYLK+R+EM  +F+DLPEALENT+EIA+RCSF+L+   PILPRF     D  + E
Sbjct: 256  RLTPDHYLKSRAEMAKLFADLPEALENTIEIAKRCSFVLKTRKPILPRFTGATDDAEEAE 315

Query: 307  EENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  LR +AV GL++RLA   ++ GY   DYR+RLDFEL+VI RM+F GYFLIVADFI
Sbjct: 316  RAEASELRRQAVEGLDMRLATLGMSPGYEEMDYRERLDFELSVIERMRFPGYFLIVADFI 375

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 376  KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA
Sbjct: 436  DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +P  L +AI ++ + +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV
Sbjct: 496  NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP 
Sbjct: 556  PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGINVDLAAIPL 615

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN 
Sbjct: 616  DDKLTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNA 675

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK 
Sbjct: 676  RKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMD+Q+ERF+ GA KNG+SK  A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+MK HY
Sbjct: 736  EMDQQRERFVVGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTL+M N EK+  F QDA++  I+++ PSV T    F+ GDNRIYY+LAA+K
Sbjct: 796  PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHFQTGDNRIYYALAALK 855

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG +   HI+E   DKPF  +EDFC R+D +++NRRVLESL+FAGA DCFG  R QL  
Sbjct: 856  GVGESAVDHIVEVRGDKPFAGIEDFCLRIDPRQVNRRVLESLIFAGAFDCFGTDRAQLSA 915

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             LD I  YAQ  ++N+ +   +IF     +  +KI+L  FS   +S R   E +VLGFY 
Sbjct: 916  GLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKISLPPFSPWLASERLLKEFQVLGFYL 975

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGN--NIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            + HPLD Y  +L+KM ++ + E    I+    N RLA  V+SKQ++KTR G+++G + FS
Sbjct: 976  TAHPLDSYANLLQKMRVQTFAEFSQAIKQGAFNARLAGTVISKQERKTRTGNKMGIIVFS 1035

Query: 1022 EPAKEYEANFF 1032
            + + ++EA  F
Sbjct: 1036 DSSGQFEAVLF 1046


>gi|15888619|ref|NP_354300.1| DNA polymerase III subunit alpha [Agrobacterium tumefaciens str. C58]
 gi|15156343|gb|AAK87085.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58]
          Length = 1167

 Score = 1343 bits (3477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 648/1033 (62%), Positives = 803/1033 (77%), Gaps = 7/1033 (0%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K+P FVHL+VHS+YSLLEGAL L  I+ K   D QPAIAITDTNNLF ALEFS+KA   G
Sbjct: 16   KTPGFVHLRVHSAYSLLEGALPLKKIMSKAVGDGQPAIAITDTNNLFVALEFSEKARDEG 75

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG- 125
            +QPIIGCQL IDMQD  +      +    +P+IVLL + AEGY+RL++LVSR YL  +G 
Sbjct: 76   LQPIIGCQLSIDMQDAAEDRRNHNSHLQKLPAIVLLAANAEGYERLVDLVSRAYLDGEGG 135

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
              SV I  +WL+E    GLI LTG S GP+D A     +  A++RLLT K LFGDRLY+ 
Sbjct: 136  SHSVHITRAWLEEASNAGLIALTGASGGPVDMALKEGHAAQAKERLLTLKSLFGDRLYIE 195

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            LQR  GYDR  E +++ LAY H++PLVATN + F S+ DYEAHD LMAVAH+ +VS   R
Sbjct: 196  LQRQSGYDRSHERRLIGLAYEHDIPLVATNEAFFPSKADYEAHDALMAVAHNAIVSDDSR 255

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DI 303
             R+TPDHYLK+R EM ++F+DLPEALENTVEIA RCS++L+   PILPRF     D    
Sbjct: 256  FRLTPDHYLKSRDEMTALFADLPEALENTVEIALRCSYVLKKRGPILPRFTGASDDPEAA 315

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ E  ELR +AV GL+ RL+   +A GY  QDYR+RLDFEL VI+RMKF GYFLIVADF
Sbjct: 316  ERAETEELRRQAVEGLDQRLSALGMAPGYTEQDYRERLDFELGVISRMKFPGYFLIVADF 375

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK+ +IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFC
Sbjct: 376  IKWAKQQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFC 435

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+P
Sbjct: 436  QDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNP 495

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A+P  L +AI ++ R +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+L
Sbjct: 496  ANPTPLSKAIEEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKL 555

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VPMYRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L+ ++DF+A+RG+KVDL+ IP
Sbjct: 556  VPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVDFVAKRGIKVDLAAIP 615

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN
Sbjct: 616  LEDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYN 675

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G+E++ SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK
Sbjct: 676  ARKHGEEELESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIK 735

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EEMD+Q+ERF+ GA KNG+SK  A  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK H
Sbjct: 736  EEMDQQRERFVDGAIKNGVSKPQANTIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAH 795

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YPVEFLAASMTL+M N EK+  F QDA +  I+++ PSV T    F+ G+NRIYYSLAAI
Sbjct: 796  YPVEFLAASMTLDMANTEKLNDFRQDAGRLGIEVVAPSVQTSFRQFETGENRIYYSLAAI 855

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KGVG     HI++   +KPF SLEDFC R+D K++NRRVLESL+ AGA DCFG  R +L+
Sbjct: 856  KGVGEGAVEHIVQVRGEKPFTSLEDFCLRIDPKQINRRVLESLINAGAFDCFGRDRAELI 915

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              LD I  YAQ  + NRT    ++F    GT  +K+ L  F     S +   E +VLGFY
Sbjct: 916  GGLDRIIGYAQMAQNNRTIGQSDMFGSGGGTGPEKLILPAFQSWLPSEKLIREYQVLGFY 975

Query: 963  FSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVT 1019
             + HPLD Y+P+L K+ ++ + + S A  +G +   RLA  V  KQ++KTR G+++G VT
Sbjct: 976  LTAHPLDTYRPLLEKLRVQNFADFSAAVKQGASTVGRLAGTVTGKQERKTRTGNKMGIVT 1035

Query: 1020 FSEPAKEYEANFF 1032
            FS+ + +YEA  F
Sbjct: 1036 FSDASGQYEAVLF 1048


>gi|222085600|ref|YP_002544130.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter
            K84]
 gi|221723048|gb|ACM26204.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter
            K84]
          Length = 1187

 Score = 1342 bits (3473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1034 (61%), Positives = 810/1034 (78%), Gaps = 13/1034 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  IL K A D QPAIA+TDTNNLF ALEFSQKA   G+
Sbjct: 39   TPEFVHLRVHSAYSLLEGALPLKKILAKAAGDNQPAIAVTDTNNLFVALEFSQKAMDEGL 98

Query: 68   QPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            QPIIGCQ+ IDM+D ++   +G +     +PSIVL  +T  GY+RL++LVSR YL  +G 
Sbjct: 99   QPIIGCQVSIDMEDGVEGEKRGPQQALAKLPSIVLFAATERGYERLVDLVSRAYLGGEGN 158

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q+V I  SWL+EIGTEG+I LTG   GP+D A     +  A  RLL  K+LFGDRLY+ L
Sbjct: 159  QAVHITASWLEEIGTEGMIALTGSLGGPVDMALKEGHAPQALSRLLALKRLFGDRLYIEL 218

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            QRH  YDR  E +++ LAY HELPLVATN + F + +DY+AHD LMAVAH+ +VS   R 
Sbjct: 219  QRHGTYDRRHEQKMIALAYEHELPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDTRF 278

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI-----EKECD 301
            R+TPDHYLK+R++M  +F++LPEALENTVEIARRCSF+L+   PILPRF      E+E D
Sbjct: 279  RLTPDHYLKSRADMAKLFANLPEALENTVEIARRCSFVLKTRKPILPRFTGAADDEEEAD 338

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E  ELR +A+ GL+ RLA   +A GY  +DYR+RL+FEL+VI RMKF GYFLIVA
Sbjct: 339  ---RAESAELRAQAIEGLDQRLASLGMAPGYVEKDYRERLEFELSVIERMKFPGYFLIVA 395

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDID
Sbjct: 396  DFIKWAKRHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDID 455

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN
Sbjct: 456  FCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPN 515

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+P  L QAI ++ R +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS
Sbjct: 516  NPANPTPLHQAIKEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLS 575

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ +DL+ 
Sbjct: 576  KLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVAKRGISIDLAS 635

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI V
Sbjct: 636  IPLDDKKTYDMLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPV 695

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN RK+G+E+I SIHP ID +LKETQGVI+YQEQVMQ+AQ+LSGYSL EAD+LRRAMGKK
Sbjct: 696  YNARKHGEEEIESIHPTIDYLLKETQGVIVYQEQVMQVAQVLSGYSLGEADLLRRAMGKK 755

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            IK EMD+Q+ERF+ GA KNG+SK  +  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK
Sbjct: 756  IKAEMDQQRERFVDGAVKNGVSKGQSDVIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMK 815

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMTL+M N EK+  F QDA++  I+++ PS+ T    F+ G+NRIYY+LA
Sbjct: 816  AHYPVEFLAASMTLDMANTEKVNDFRQDAKRLGIEVIAPSIQTSFRRFETGENRIYYALA 875

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            A+KGVG +   HI+E   D+PF  +EDFC R+D K++NRRVLESL+ AGA DCF   R Q
Sbjct: 876  ALKGVGESAVDHIVEVRGDQPFAGIEDFCLRIDPKQINRRVLESLIAAGAFDCFEIDRAQ 935

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L+  +D I  YAQ  ++N+ +   ++F     +  +KI+   F+   +S R   E +VLG
Sbjct: 936  LIGGIDRIMGYAQVAQENKRSGQHDMFG-SAASGPEKISFPPFTPWLASERLLREFQVLG 994

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            FY + HPLD YK +L KM ++ + +  A ++   +N RLA  V+SKQ++KTR G+++G  
Sbjct: 995  FYLTAHPLDTYKSVLDKMRVQNFADFSAAVKQGASNGRLAGTVISKQERKTRTGNKMGIF 1054

Query: 1019 TFSEPAKEYEANFF 1032
             FS+ + ++EA  F
Sbjct: 1055 VFSDASGQFEAVLF 1068


>gi|222148298|ref|YP_002549255.1| DNA polymerase III subunit alpha [Agrobacterium vitis S4]
 gi|221735286|gb|ACM36249.1| DNA polymerase III alpha chain [Agrobacterium vitis S4]
          Length = 1179

 Score = 1338 bits (3463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 644/1030 (62%), Positives = 795/1030 (77%), Gaps = 6/1030 (0%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
             P FVHL+VHS+YSLLEGAL L  IL K+A+DQQPAIAITDTNNLF ALEFSQKA + G+
Sbjct: 32   GPGFVHLRVHSAYSLLEGALPLKKILSKVASDQQPAIAITDTNNLFIALEFSQKALSDGL 91

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            QPIIGCQL IDM+D      +G +     P+IVLL +   GY+RL++LVSR YL     Q
Sbjct: 92   QPIIGCQLSIDMEDA-NEEKRGNSSLAKYPAIVLLAADPAGYERLVDLVSRAYLQGDNTQ 150

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            SV I  SWL+EIGT+GLI LTG + GP+D          A  RL T K LFGDRLY+ LQ
Sbjct: 151  SVHITASWLEEIGTDGLIALTGATGGPVDLPVKDGHHAQALSRLQTLKSLFGDRLYIELQ 210

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH+GYDR  ES+++ LAY H++PLVATN + F S +DY+AHD LMAVAH+ +VS   R R
Sbjct: 211  RHQGYDRVHESRMIALAYDHDIPLVATNEAFFPSRDDYDAHDALMAVAHNAIVSDDRRFR 270

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQK 305
            +TPDHYLK+R EM ++F DLPEALENTVEIA RCSF+L    PILPRF     D  + ++
Sbjct: 271  LTPDHYLKSRKEMQTLFRDLPEALENTVEIASRCSFVLDTRNPILPRFTGGSDDPEEAER 330

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E  ELR +A+ GL+ RLA+  +A GY  ++YR RLDFEL VI RMKF GYFLIVADFI+
Sbjct: 331  AEAGELRRQAIEGLDDRLAKLGMAPGYDEKEYRDRLDFELGVIERMKFPGYFLIVADFIK 390

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK  +IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQD
Sbjct: 391  WAKSQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQD 450

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVDR+CKL+PN+PA+
Sbjct: 451  RREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDRICKLVPNNPAN 510

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            P  L +AI ++ +F+E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LVP
Sbjct: 511  PTPLSKAIEEEPKFQEEAEKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLVP 570

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF   R +++DL+ IP D
Sbjct: 571  MYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFCRLRDIEIDLATIPLD 630

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN R
Sbjct: 631  DEKTYQMLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYNAR 690

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+E+I SIHP ID +LKETQGVI+YQEQVMQ+AQ+LSGYSL EAD+LRRAMGKKIKEE
Sbjct: 691  KHGEEEIESIHPTIDYLLKETQGVIVYQEQVMQVAQVLSGYSLGEADLLRRAMGKKIKEE 750

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MDKQ+ RF+ GA KNG+SK  A NIF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HYP
Sbjct: 751  MDKQRARFVDGAVKNGVSKPQADNIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYP 810

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMTL+M N EK+  F QDA +  I+++PPSV T    F+ G NRIYYSLAA+KG
Sbjct: 811  VEFLAASMTLDMANTEKLVDFRQDAGRLGIEVVPPSVQTSFRHFQTGPNRIYYSLAALKG 870

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG     HI+    D PF  LEDFC R+D K++NRRV ESL+FAGA DCFG  R +LL  
Sbjct: 871  VGDAAVEHIVTVRGDTPFADLEDFCLRIDPKQINRRVFESLIFAGAFDCFGRDRPELLAG 930

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +D I  YAQ  ++N  +   ++F     T  ++I+   ++    S +   E +VLGFY S
Sbjct: 931  MDRIIGYAQRAQENAVSGQSDMFGSGGATGPERISFPTYTPWLPSEKLMREFQVLGFYLS 990

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPLD YKP+L KM ++ + +    +R      RLA  V+SKQ++KTR G+++G VTFS+
Sbjct: 991  AHPLDTYKPLLEKMRVQNFVDFSGAVRQGATAGRLAGTVISKQERKTRTGNKMGIVTFSD 1050

Query: 1023 PAKEYEANFF 1032
               ++EA  F
Sbjct: 1051 ATGQFEAVLF 1060


>gi|150396144|ref|YP_001326611.1| DNA polymerase III subunit alpha [Sinorhizobium medicae WSM419]
 gi|150027659|gb|ABR59776.1| DNA polymerase III, alpha subunit [Sinorhizobium medicae WSM419]
          Length = 1165

 Score = 1335 bits (3454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 642/1030 (62%), Positives = 795/1030 (77%), Gaps = 6/1030 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS+YSLLEGAL L  I+ K  AD QPAI I DTNNLF+ALEFSQKA   G+Q
Sbjct: 17   PQFVHLRVHSAYSLLEGALPLKKIIGKAIADDQPAIGIADTNNLFAALEFSQKAAGDGLQ 76

Query: 69   PIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQL IDM+D  +   +G    F  +PS+VL+ +T +GY RL+ELVSR YL  +G  
Sbjct: 77   PIIGCQLSIDMEDEAEGERRGHAHQFVKLPSLVLIAATDDGYARLVELVSRAYLEGEGHH 136

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             VRI  SWL   GT GLI LTG  +GPID A    S  +AE RL T  +LFGDRLYV LQ
Sbjct: 137  QVRISRSWLSAGGTSGLIALTGAGTGPIDMAVKAGSPALAEARLKTLIELFGDRLYVELQ 196

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  YDR  E++++ LAY  ++PLVATN + F S  DY+AHD L+AVAH+ +VS   R R
Sbjct: 197  RHGNYDRSHENRMIDLAYRLDVPLVATNEAFFPSPADYDAHDALIAVAHNAMVSDDSRFR 256

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE- 306
            +TPDHYLK+R EM ++F+DLPEALENT+EIARRCSF+L+  +PILPRF     D  Q E 
Sbjct: 257  LTPDHYLKSRKEMAALFADLPEALENTIEIARRCSFMLKTRSPILPRFTGASGDPEQAER 316

Query: 307  -EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E  ELR +A  GLE RLA+  +A GY  +DYR+RL FEL VI RMKF GYFLIVADFI+
Sbjct: 317  AEVAELRRQAEEGLEGRLAKLGMAPGYKEEDYRERLAFELGVIERMKFPGYFLIVADFIK 376

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+++IPVGPGRGSGAGS+ AYALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQD
Sbjct: 377  WAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFDIDFCQD 436

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA+
Sbjct: 437  RREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPAN 496

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            P  L +AI ++ R +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLSQLVP
Sbjct: 497  PTPLSKAIEEEPRLQEEAEKEPVVGRLLDIAQKIEGLYRHASTHAAGIVIGDRPLSQLVP 556

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ +DL+ IP D
Sbjct: 557  MYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVAKRGIHIDLASIPLD 616

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY  L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI +YN R
Sbjct: 617  DPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPIYNAR 676

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+E+I SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIKEE
Sbjct: 677  KHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKEE 736

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MDKQ+ RF+ GA +NG+SK  A  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HYP
Sbjct: 737  MDKQRARFVDGAVRNGVSKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYP 796

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMTL+M N EKI  F QDA +  IQ++ PSV T    F+ G+ RIYYSLAA+KG
Sbjct: 797  VEFLAASMTLDMSNTEKINDFRQDAMRLGIQVIAPSVQTSHRHFETGEKRIYYSLAALKG 856

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG +   HI+    D+PF SLEDFC R+D K LNRRV ESL+ AGA DCFGY R +L+  
Sbjct: 857  VGESAVDHIVAVREDRPFASLEDFCLRIDPKLLNRRVFESLIAAGAFDCFGYDRAELVGG 916

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            LD I  +AQ  ++N+ +   ++F     T  +KI L  ++   +S +   E +VLGFY S
Sbjct: 917  LDRILGFAQRAQENKVSGQSDMFGAGAATGPEKIALPPYTPWLASEKLHREFQVLGFYLS 976

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPLD Y  +L KM ++ + +  A ++      RLA  V SKQ++KTR G+++G V FS+
Sbjct: 977  AHPLDTYNSLLAKMRVQTFADFSAAVKKGATAGRLAGTVTSKQERKTRTGNKMGIVAFSD 1036

Query: 1023 PAKEYEANFF 1032
             + ++EA  F
Sbjct: 1037 ASGQFEAVLF 1046


>gi|227821642|ref|YP_002825612.1| DNA polymerase III subunit alpha [Sinorhizobium fredii NGR234]
 gi|227340641|gb|ACP24859.1| DNA polymerase III, alpha subunit [Sinorhizobium fredii NGR234]
          Length = 1165

 Score = 1329 bits (3439), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 647/1030 (62%), Positives = 799/1030 (77%), Gaps = 6/1030 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS++SLLEGAL L  I+ K  AD+QPAI I DTNNLF+ALEFSQKA   G+Q
Sbjct: 17   PQFVHLRVHSAFSLLEGALPLKKIIAKAVADEQPAIGIADTNNLFAALEFSQKAADDGLQ 76

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTP-FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQL IDM+D  +   +        +PSIVL+ +T  GY RL++LVSR YL  +G Q
Sbjct: 77   PIIGCQLSIDMEDEAEGERRSHAQQLAKLPSIVLIAATDAGYTRLVDLVSRAYLEGEGHQ 136

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            +VR+  SWL   GTEGLI LTG  SGP+D A     + +AE RL T  +LFGDRLYV LQ
Sbjct: 137  AVRVTRSWLAAGGTEGLIALTGAGSGPVDLALKAGLAALAEARLKTLVELFGDRLYVELQ 196

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  YDR +E+++V LAY H++PLVATN + F S  DY+AHD LMAVAH+ VVS   R R
Sbjct: 197  RHGSYDRRQENRLVDLAYRHDIPLVATNEAFFPSPADYDAHDALMAVAHNAVVSDDRRFR 256

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE- 306
            +T DHYLK+R EM ++F+DLPEALENTVEIARRCSF+L+   PILPRF     D ++ E 
Sbjct: 257  LTSDHYLKSRKEMAALFADLPEALENTVEIARRCSFMLKTRGPILPRFTGASDDPVEAER 316

Query: 307  -EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E  ELR +A  GLE RL++  +A GY  +DYR+RL FEL VI RMKF GYFLIVADFI+
Sbjct: 317  AESAELRRQAEEGLEQRLSRLGMAPGYKEEDYRERLAFELGVIERMKFPGYFLIVADFIK 376

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+++IPVGPGRGSGAGS+ AYALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQD
Sbjct: 377  WAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFDIDFCQD 436

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA+
Sbjct: 437  RREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPAN 496

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            P  L +AI ++ R +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLSQLVP
Sbjct: 497  PTPLSKAIEEEPRLQEEAEKEPVVGRLLDIAQKIEGLYRHASTHAAGIVIGDRPLSQLVP 556

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP D
Sbjct: 557  MYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVAKRGIAVDLASIPLD 616

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN R
Sbjct: 617  DPKTYEILSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYNAR 676

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+E+I SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIKEE
Sbjct: 677  KHGEEEIESIHPKIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKEE 736

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MDKQ+ RF+ GA  NG+ K  A  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HYP
Sbjct: 737  MDKQRARFVEGAVGNGVVKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYP 796

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMTL+M N EKI  F QDA +  IQ++ PSV T    F+ GDNRIYYSLAAIKG
Sbjct: 797  VEFLAASMTLDMSNTEKINDFRQDAIRLGIQVIAPSVQTSFRLFETGDNRIYYSLAAIKG 856

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG +   HI+    D+PF SLEDFC R+D K LNRRV ESL+ AGA DCFGY R +L+  
Sbjct: 857  VGESAVEHIVAVRGDRPFASLEDFCLRIDPKLLNRRVFESLIAAGAFDCFGYDRAELIGG 916

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            LD I  +AQ  ++N+ +   ++F     T  +KI L  ++   +S +   E +VLGFY S
Sbjct: 917  LDRILGFAQRAQENKLSGQSDMFGAGAATGPEKIALPVYTPWLASEKLHREFQVLGFYLS 976

Query: 965  GHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPLD Y  +L KM ++ + + S A  +G +  RLA  V SKQ++KTR G+++G V FS+
Sbjct: 977  AHPLDTYNKLLAKMRVQTFADFSAAVKKGASAGRLAGTVTSKQERKTRTGNKMGIVAFSD 1036

Query: 1023 PAKEYEANFF 1032
             + ++EA  F
Sbjct: 1037 ASGQFEAVLF 1046


>gi|15965042|ref|NP_385395.1| DNA polymerase III subunit alpha [Sinorhizobium meliloti 1021]
 gi|307301114|ref|ZP_07580883.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
 gi|15074221|emb|CAC45868.1| Probable DNA polymerase III, alpha chain [Sinorhizobium meliloti
            1021]
 gi|306904069|gb|EFN34655.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
          Length = 1169

 Score = 1322 bits (3421), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/1030 (62%), Positives = 791/1030 (76%), Gaps = 6/1030 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS+YSLLEGAL L  I+ K  AD QPAI I DTNNLF+ALEFSQKA   G+Q
Sbjct: 21   PQFVHLRVHSAYSLLEGALPLKKIIGKAVADDQPAIGIADTNNLFAALEFSQKAADDGLQ 80

Query: 69   PIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQL IDM+D  +   +G    F  +P+IVL+ +T +GY RL+ELVSR YL  +G Q
Sbjct: 81   PIIGCQLSIDMEDEAEGERRGHAHQFVKLPAIVLIAATEDGYARLVELVSRAYLEGEGHQ 140

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              RI  SWL   GT GLI LTG  +GP+D A    S  +AE RL    +LFGDRLYV LQ
Sbjct: 141  QTRISRSWLAAGGTTGLIALTGAGAGPVDMALKSGSPALAEARLKALIELFGDRLYVELQ 200

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  YDR  E++++ LAY  ++PLVATN + F S  DY+AHD LMAVAH+ +VS   R R
Sbjct: 201  RHGNYDRRHENRMIDLAYRLDIPLVATNEAFFPSPSDYDAHDALMAVAHNAMVSDDSRFR 260

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQK 305
            +TPDHYLK+R EM ++F+DLPEALENT+E+ARRCSF+L+   PILPRF     D  + ++
Sbjct: 261  LTPDHYLKSRKEMAALFADLPEALENTIEVARRCSFMLKTRGPILPRFTGASDDPEEAER 320

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E  ELR +A  GLE RLA+  +A GY  +DYR+RL FEL VI RMKF GYFLIVADFI+
Sbjct: 321  AEVAELRRQAEEGLEERLAKLGMAPGYKEEDYRERLAFELGVIQRMKFPGYFLIVADFIK 380

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+++IPVGPGRGSGAGS+ AYALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQD
Sbjct: 381  WAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFDIDFCQD 440

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA+
Sbjct: 441  RREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPAN 500

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            P  L +AI ++ R RE    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLSQLVP
Sbjct: 501  PTPLSKAIEEEPRLREEAEKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSQLVP 560

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+ +RG+ +DL+ IP D
Sbjct: 561  MYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAIDFVGKRGIHIDLASIPLD 620

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY  L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN R
Sbjct: 621  DPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYNAR 680

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+E+I SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK E
Sbjct: 681  KHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKAE 740

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MDKQ+ RF+ GA KNG+SK  A  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HYP
Sbjct: 741  MDKQRARFVDGAVKNGVSKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYP 800

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMTL+M N +KI  F QDA +  IQ++ PSV T    F+ GDNRIYYSLAA+KG
Sbjct: 801  VEFLAASMTLDMSNTDKINDFRQDAMRLGIQVVAPSVQTSHRHFETGDNRIYYSLAALKG 860

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG +   HI+    D+PF SLEDFC R+D K LNRRV ESL+ AGA DCFGY R +L+  
Sbjct: 861  VGESAVDHIVAVRGDRPFASLEDFCLRIDPKLLNRRVFESLIAAGAFDCFGYDRAELIGG 920

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            LD I  +AQ  ++N+ +   ++F     T  +KI L  ++   +S +   E +VLGFY S
Sbjct: 921  LDRILGFAQRAQENKVSGQSDMFGAGAATGPEKIALPPYTPWLASEKLHREFQVLGFYLS 980

Query: 965  GHPLDVYKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPLD Y  +L KM ++ + +  +         RLA  V SKQ++KTR G+++G V FS+
Sbjct: 981  AHPLDTYNNLLAKMRVQTFADFSAAVKKGAAAGRLAGTVTSKQERKTRTGNKMGIVAFSD 1040

Query: 1023 PAKEYEANFF 1032
             + ++EA  F
Sbjct: 1041 ASGQFEAVLF 1050


>gi|325292654|ref|YP_004278518.1| DNA polymerase III subunit alpha [Agrobacterium sp. H13-3]
 gi|325060507|gb|ADY64198.1| DNA polymerase III alpha subunit [Agrobacterium sp. H13-3]
          Length = 1166

 Score = 1321 bits (3418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/1032 (61%), Positives = 793/1032 (76%), Gaps = 6/1032 (0%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K+P FVHL+VHS+YSLLEGAL L  I+ K  AD QPAIAITDTNNLF ALEFS+KA   G
Sbjct: 16   KTPGFVHLRVHSAYSLLEGALPLKKIMSKAVADGQPAIAITDTNNLFVALEFSEKARDEG 75

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQG 125
            +QPIIGCQ+ IDMQD +       +    +P+IVLL + A GY+RL++L+SR YL  + G
Sbjct: 76   LQPIIGCQVSIDMQDAVDDRRNHNSHLAKLPAIVLLAADAGGYERLVDLISRAYLEGESG 135

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             QSV I  +WL+E    GLI+LTG S GP+D A     +  A +RLL  K LFGD+LY+ 
Sbjct: 136  GQSVHITRAWLEEASNAGLIVLTGASGGPVDMALKDGHTAQARERLLALKSLFGDKLYIE 195

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            LQR  G+DR  E +++ LAY H++PLVATN + F S  DYEAHD LMAVAH+ +VS   R
Sbjct: 196  LQRQSGFDRVHERRMIGLAYEHDIPLVATNEAFFPSRADYEAHDALMAVAHNAIVSDDSR 255

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DI 303
             R+TPDHY+K+R EM  +F+DLPEALENTVEIA RCS++L+   PILPRF     D    
Sbjct: 256  FRLTPDHYMKSREEMAELFADLPEALENTVEIAMRCSYVLKKRGPILPRFTGASDDPEAA 315

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            Q+ E  ELR +AV GL++RLA   +A GY  Q+YR RLDFEL VI RM F GYFLIVADF
Sbjct: 316  QRAEAEELRRQAVEGLDLRLAALGMAPGYAEQEYRDRLDFELGVIERMGFPGYFLIVADF 375

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK+ +IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFC
Sbjct: 376  IKWAKQQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFC 435

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+P
Sbjct: 436  QDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNP 495

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A+P  L +AI ++ R +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+L
Sbjct: 496  ANPTPLSKAIEEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKL 555

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VPMYRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L+ ++DF+A+RG+KVDL+ IP
Sbjct: 556  VPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVDFVAKRGIKVDLAAIP 615

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN
Sbjct: 616  LDDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYN 675

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G+E++ SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK
Sbjct: 676  ARKHGEEELESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIK 735

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EEMD+Q+ERF+ GA +N +SK  A  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK H
Sbjct: 736  EEMDQQRERFVDGAIRNSVSKPQANTIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAH 795

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YPVEFLAASMTL+M N EK+  F QDA +  I+++ PSV T    F+ G+NRIYYSLAAI
Sbjct: 796  YPVEFLAASMTLDMANTEKLNDFRQDASRLGIEVVAPSVQTSFRQFETGENRIYYSLAAI 855

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KGVG     HI+     KPF SLEDFC R+D K++NRRVLESL+ AG  DCFG  R +++
Sbjct: 856  KGVGEGAVEHIVTVRDGKPFASLEDFCLRIDPKQINRRVLESLINAGGFDCFGRDRAEMI 915

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              LD I  Y+Q  +++R     ++F     +  +K+ L  F    +S +   E +VLGFY
Sbjct: 916  GGLDRIIGYSQRAQESRVTGQSDMFGSGGASGPEKLILPAFQPWLASEKLLREYQVLGFY 975

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTF 1020
             + HPLD Y+P+L K+ ++ + +  A ++      RLA  V  KQ++KTR G+++G VTF
Sbjct: 976  LTAHPLDTYRPVLEKLRVQNFADFSAAVKQGATAGRLAGTVTGKQERKTRTGNKMGIVTF 1035

Query: 1021 SEPAKEYEANFF 1032
            S+ + +YEA  F
Sbjct: 1036 SDASGQYEAVLF 1047


>gi|307317847|ref|ZP_07597285.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
 gi|306896609|gb|EFN27357.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
          Length = 1169

 Score = 1321 bits (3418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/1030 (61%), Positives = 791/1030 (76%), Gaps = 6/1030 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS+YSLLEGAL L  I+ K  AD QPAI I DTNNLF+ALEFSQKA   G+Q
Sbjct: 21   PQFVHLRVHSAYSLLEGALPLKKIIGKAVADDQPAIGIADTNNLFAALEFSQKAADDGLQ 80

Query: 69   PIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQL IDM+D  +   +G    F  +P+IVL+ +T +GY RL+ELVSR YL  +G Q
Sbjct: 81   PIIGCQLSIDMEDEAEGERRGHAHQFVKLPAIVLIAATEDGYARLVELVSRAYLEGEGHQ 140

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              RI  SWL   GT GLI LTG  +GP+D A    S  +AE RL    +LFGDRLYV LQ
Sbjct: 141  QTRISRSWLAAGGTTGLIALTGAGAGPVDMALKSGSPALAEARLQALIELFGDRLYVELQ 200

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  YDR  E++++ LAY  ++PLVATN + F S  DY+AHD LMAVAH+ +VS   R R
Sbjct: 201  RHGNYDRRHENRMIDLAYRLDIPLVATNEAFFPSPSDYDAHDALMAVAHNAMVSDDSRFR 260

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQK 305
            +TPDHYLK+R EM ++F+DLPEALENT+E+ARRCSF+L+   PILPRF     D  + ++
Sbjct: 261  LTPDHYLKSRKEMAALFADLPEALENTIEVARRCSFMLKTRGPILPRFTGASDDPEEAER 320

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E  ELR +A  GLE RLA+  +A GY  +DYR+RL FEL VI RMKF GYFLIVADFI+
Sbjct: 321  AEVAELRRQAEEGLEERLAKLGMAPGYKEEDYRERLAFELGVIQRMKFPGYFLIVADFIK 380

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+++IPVGPGRGSGAGS+ AYALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQD
Sbjct: 381  WAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFDIDFCQD 440

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA+
Sbjct: 441  RREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPAN 500

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            P  L +AI ++ R +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLSQLVP
Sbjct: 501  PTPLSKAIEEEPRLQEEAEKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSQLVP 560

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+ +RG+ +DL+ IP D
Sbjct: 561  MYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVGKRGIHIDLASIPLD 620

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY  L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN R
Sbjct: 621  DPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYNAR 680

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+E+I SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK E
Sbjct: 681  KHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKAE 740

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MDKQ+ RF+ GA KNG+SK  A  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HYP
Sbjct: 741  MDKQRARFVDGAVKNGVSKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYP 800

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMTL+M N +KI  F QDA +  IQ++ PSV T    F+ GDNRIYYSLAA+KG
Sbjct: 801  VEFLAASMTLDMSNTDKINDFRQDAMRLGIQVVAPSVQTSHRHFETGDNRIYYSLAALKG 860

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG +   HI+    D+PF SLEDFC R+D K LNRRV ESL+ AGA DCFGY R +L+  
Sbjct: 861  VGESAVDHIVAVRGDRPFASLEDFCLRIDPKLLNRRVFESLIAAGAFDCFGYDRAELIGG 920

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            LD I  +AQ  ++N+ +   ++F     T  +KI L  ++   +S +   E +VLGFY S
Sbjct: 921  LDRILGFAQRAQENKVSGQSDMFGAGAATGPEKIALSPYTPWLASEKLHREFQVLGFYLS 980

Query: 965  GHPLDVYKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPLD Y  +L KM ++ + +  +         RLA  V SKQ++KTR G+++G V FS+
Sbjct: 981  AHPLDTYNNLLAKMRVQTFADFSAAVKKGAAAGRLAGTVTSKQERKTRTGNKMGIVAFSD 1040

Query: 1023 PAKEYEANFF 1032
             + ++EA  F
Sbjct: 1041 ASGQFEAVLF 1050


>gi|163759322|ref|ZP_02166408.1| DNA polymerase III subunit alpha [Hoeflea phototrophica DFL-43]
 gi|162283726|gb|EDQ34011.1| DNA polymerase III subunit alpha [Hoeflea phototrophica DFL-43]
          Length = 1189

 Score = 1246 bits (3225), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 605/1031 (58%), Positives = 775/1031 (75%), Gaps = 8/1031 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHSSYSLLEGAL +  ++ +  AD+QPA+AITDTNNLF ALEFS KA  AGIQ
Sbjct: 41   PGFVHLRVHSSYSLLEGALPIKTLIKRALADEQPALAITDTNNLFGALEFSIKAMEAGIQ 100

Query: 69   PIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            P+IGCQLDIDM+D      +  +     +PSIVL  STA GY+RL  LVSR YL     +
Sbjct: 101  PLIGCQLDIDMEDGAASERRSHRDQLQRLPSIVLYASTATGYERLTALVSRAYLEGDSVE 160

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I +SWL+E G +GLI LTG   GP+D+    +    A +RL   K +F DR+Y+ LQ
Sbjct: 161  RPHILMSWLEE-GADGLIALTGSVKGPVDQCIRESHPDRAAERLNRLKTVFEDRVYIELQ 219

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R +GYDR  ES+++ LAY  ++PLVATN + F + +D+EAHD LMAVA + V+S   RPR
Sbjct: 220  RQQGYDRAHESKMIALAYAADVPLVATNEAFFPTPDDFEAHDALMAVAANAVMSDDRRPR 279

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---EKECDDIQ 304
            ++ D+ LK+R+EM ++F+D+PEAL NT+EIA+RCS I++   PILPRF    E++ D   
Sbjct: 280  LSVDNCLKSRAEMTALFADVPEALRNTIEIAQRCSAIVETRPPILPRFTGGGEEDPDAAL 339

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              E  ELR ++  GLE RL +  +A+GY   DYR+RL  EL++I  MKF GYFLIVADFI
Sbjct: 340  AAEAAELRRQSEEGLERRLERIGLAEGYTHDDYRERLKTELDIIENMKFPGYFLIVADFI 399

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP R+SMPDFDIDFCQ
Sbjct: 400  KWAKDHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPARVSMPDFDIDFCQ 459

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVIRYVQ KYG E+V QIITFGSLQA+AALRDVGR L+MPY  VDR+CKL+PN+PA
Sbjct: 460  DRREEVIRYVQKKYGREQVGQIITFGSLQARAALRDVGRVLEMPYGLVDRICKLVPNNPA 519

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +P  L +AI ++ RF E    +P+V+RLL+I+QKLEGLYRHASTHAAGIVIGDRPLSQLV
Sbjct: 520  NPTPLNKAIEEEPRFAEEMEKEPAVERLLDIAQKLEGLYRHASTHAAGIVIGDRPLSQLV 579

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++ F+A+RG+ +DL  +P 
Sbjct: 580  PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVGFIAKRGITIDLEGLPL 639

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD IEDIIALV+LYRPGP++NI VYN 
Sbjct: 640  DDQPTYEMLSRGETVGVFQVESAGMRKALIGMRPDRIEDIIALVALYRPGPMENIPVYNA 699

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+E++ SIHP ID +L ETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKKIKE
Sbjct: 700  RKHGEEELASIHPKIDGLLAETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKIKE 759

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMDKQ+ RF+ GA +  +SK  A  IF+LLAKFA+YGFNKSHAAAY ++SYQTA++K HY
Sbjct: 760  EMDKQRARFVEGAVERDVSKPQADMIFDLLAKFANYGFNKSHAAAYGIVSYQTAYLKAHY 819

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTL+M N +K+  F QDA++  I++ PPSV T    F+ G+NRIYY+LAAIK
Sbjct: 820  PVEFLAASMTLDMSNTDKLNDFRQDAKRLGIEVAPPSVQTSFRHFETGENRIYYALAAIK 879

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG     HI+E   D  F SLEDFC R+D +++NRRVLESL+ AGALDCFG  R  L+ 
Sbjct: 880  GVGDAAVEHIVEVRGDTEFASLEDFCVRIDPRQVNRRVLESLITAGALDCFGLDRAALVA 939

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             LD I  +AQ  ++NR +   ++F       ++ I L   +    + +   E + LGFY 
Sbjct: 940  GLDRILGFAQRAQENRISGQSDMFGAGASESAETIHLPDATPWLPAEKLHREYQALGFYL 999

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            S HPLD Y  +L KM ++ + +   +++      RLA  V SKQ++KT+ G+++G V FS
Sbjct: 1000 SAHPLDSYADLLNKMRVQNWADFQVSVKAGATAGRLAGTVTSKQERKTKTGNKMGIVAFS 1059

Query: 1022 EPAKEYEANFF 1032
            + + +YEA  F
Sbjct: 1060 DSSGQYEAVLF 1070


>gi|153009730|ref|YP_001370945.1| DNA polymerase III subunit alpha [Ochrobactrum anthropi ATCC 49188]
 gi|151561618|gb|ABS15116.1| DNA polymerase III, alpha subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 1163

 Score = 1239 bits (3207), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 602/1034 (58%), Positives = 780/1034 (75%), Gaps = 14/1034 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   G+
Sbjct: 16   TPRFVHLRVHSAYSLLEGALPLGKIIKQAIADEAPAIAVTDTNNLFGALEFAQKASKDGL 75

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            QPIIGCQ+DI   D  DN +  N+ +      P +VLL +T EGY  ++ LVSR +L   
Sbjct: 76   QPIIGCQVDIAFGDHNDNGRSVNR-RVALDLAP-VVLLAATEEGYANIVRLVSRAFLETP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                V +  SWL  + ++ +I+L+GG+ GPI RAF  +    AE RL   ++ FGDRLYV
Sbjct: 134  AGDPVHVEASWLPPL-SKDVIVLSGGALGPIGRAFAADRPDRAEARLGFLREAFGDRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GY+R  E++ V LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYNRALEAKTVALAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TPDH++K+R+EM ++F+DLPEAL+NTVEIA RCS+  Q  APILPRF   E DD +
Sbjct: 253  RRRLTPDHHMKSRAEMAALFADLPEALDNTVEIAERCSWYTQTRAPILPRFT-GESDDAE 311

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               +EE +EL  +A  GL++RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVA
Sbjct: 312  AAVQEEADELARQAREGLKMRLETVGLAEGYTTEQYAERLEYEIGIITRMKFPGYFLIVA 371

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID
Sbjct: 372  DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P 
Sbjct: 432  FCQDRREEVIRYVQGKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS
Sbjct: 492  NPANPVSLAQAIDTEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++  +A++GV++DLS 
Sbjct: 552  ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLETAVKLVARKGVEIDLSH 611

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD IEDIIALV+LYRPGP++NI  
Sbjct: 612  VPLDDELTYEMLSRGETVGVFQVESAGMRKALLGMRPDRIEDIIALVALYRPGPMENIPT 671

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 672  YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK
Sbjct: 732  IREEMDKQRVRFVDGAIEGGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEF+AASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLA
Sbjct: 792  AHYPVEFIAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVMTSFRPFEVGEKQIFYSLA 851

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKGVG     HI++  A+KPF+SLEDFC RVD + +NRRVLESL+ AGA+DCFG  R  
Sbjct: 852  AIKGVGEAAVDHIVDVRAEKPFESLEDFCERVDPRIVNRRVLESLINAGAMDCFGRERPA 911

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +D I  +AQ  ++N  +   +IF    G   + + L + +    S     E + +G
Sbjct: 912  MSAGMDRIMGFAQRTQENAASGQSDIFGL-SGAPKETLILPQAAPWLPSEMLHREFQAVG 970

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            FY S HPLD Y+ +L +M ++ + + S A  RG N  RLA  V ++Q++KTR G+++G V
Sbjct: 971  FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGANAGRLAGTVTARQERKTRTGNKMGIV 1030

Query: 1019 TFSEPAKEYEANFF 1032
              S+ + ++EA  F
Sbjct: 1031 QLSDASGQFEAVLF 1044


>gi|163843098|ref|YP_001627502.1| DNA polymerase III subunit alpha [Brucella suis ATCC 23445]
 gi|163673821|gb|ABY37932.1| DNA polymerase III, alpha subunit [Brucella suis ATCC 23445]
          Length = 1163

 Score = 1224 bits (3167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/1034 (57%), Positives = 769/1034 (74%), Gaps = 14/1034 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF+ALEF+QKA   G+
Sbjct: 16   TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFAALEFAQKASKDGV 75

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            QPIIGCQLD+   D  DN +  N+ K      P +VL+ +T  GY  ++ LVSR +L   
Sbjct: 76   QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF   E DD +
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVA
Sbjct: 312  AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID
Sbjct: 372  DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P 
Sbjct: 432  FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS
Sbjct: 492  NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS 
Sbjct: 552  ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  
Sbjct: 612  LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 672  YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK
Sbjct: 732  IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLA
Sbjct: 792  AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  
Sbjct: 852  AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +G
Sbjct: 912  MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            FY S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V
Sbjct: 971  FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030

Query: 1019 TFSEPAKEYEANFF 1032
              S+ + ++EA  F
Sbjct: 1031 QLSDASGQFEAVLF 1044


>gi|225852339|ref|YP_002732572.1| DNA polymerase III subunit alpha [Brucella melitensis ATCC 23457]
 gi|256264162|ref|ZP_05466694.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 2 str.
            63/9]
 gi|225640704|gb|ACO00618.1| DNA polymerase III, alpha subunit [Brucella melitensis ATCC 23457]
 gi|263094380|gb|EEZ18225.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 2 str.
            63/9]
          Length = 1163

 Score = 1224 bits (3166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/1034 (57%), Positives = 768/1034 (74%), Gaps = 14/1034 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   G+
Sbjct: 16   TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            QPIIGCQLD+   D  DN +  N+ K      P +VL+ +T  GY  ++ LVSR +L   
Sbjct: 76   QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF   E DD +
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVA
Sbjct: 312  AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID
Sbjct: 372  DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P 
Sbjct: 432  FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS
Sbjct: 492  NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS 
Sbjct: 552  ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  
Sbjct: 612  LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 672  YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK
Sbjct: 732  IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLA
Sbjct: 792  AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  
Sbjct: 852  AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +G
Sbjct: 912  MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            FY S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V
Sbjct: 971  FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030

Query: 1019 TFSEPAKEYEANFF 1032
              S+ + ++EA  F
Sbjct: 1031 QLSDASGQFEAALF 1044


>gi|225627320|ref|ZP_03785357.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo]
 gi|225617325|gb|EEH14370.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo]
          Length = 1190

 Score = 1224 bits (3166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/1034 (57%), Positives = 768/1034 (74%), Gaps = 14/1034 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   G+
Sbjct: 43   TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 102

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            QPIIGCQLD+   D  DN +  N+ K      P +VL+ +T  GY  ++ LVSR +L   
Sbjct: 103  QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 160

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 161  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 219

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 220  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 279

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF   E DD +
Sbjct: 280  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 338

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVA
Sbjct: 339  AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 398

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID
Sbjct: 399  DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 458

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P 
Sbjct: 459  FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 518

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS
Sbjct: 519  NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 578

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS 
Sbjct: 579  ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 638

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  
Sbjct: 639  LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 698

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 699  YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 758

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK
Sbjct: 759  IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 818

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLA
Sbjct: 819  AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 878

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  
Sbjct: 879  AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 938

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +G
Sbjct: 939  MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 997

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            FY S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V
Sbjct: 998  FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1057

Query: 1019 TFSEPAKEYEANFF 1032
              S+ + ++EA  F
Sbjct: 1058 QLSDASGQFEAVLF 1071


>gi|161618789|ref|YP_001592676.1| DNA polymerase III subunit alpha [Brucella canis ATCC 23365]
 gi|254704138|ref|ZP_05165966.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686]
 gi|256044502|ref|ZP_05447406.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str.
            Rev.1]
 gi|256060935|ref|ZP_05451093.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33]
 gi|256113358|ref|ZP_05454216.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str.
            Ether]
 gi|260563856|ref|ZP_05834342.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M]
 gi|260566613|ref|ZP_05837083.1| DNA polymerase III subunit alpha [Brucella suis bv. 4 str. 40]
 gi|261324935|ref|ZP_05964132.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33]
 gi|261754804|ref|ZP_05998513.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686]
 gi|265990926|ref|ZP_06103483.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str.
            Rev.1]
 gi|265994764|ref|ZP_06107321.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str.
            Ether]
 gi|161335600|gb|ABX61905.1| DNA polymerase III, alpha subunit [Brucella canis ATCC 23365]
 gi|260153872|gb|EEW88964.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M]
 gi|260156131|gb|EEW91211.1| DNA polymerase III subunit alpha [Brucella suis bv. 4 str. 40]
 gi|261300915|gb|EEY04412.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33]
 gi|261744557|gb|EEY32483.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686]
 gi|262765877|gb|EEZ11666.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str.
            Ether]
 gi|263001710|gb|EEZ14285.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str.
            Rev.1]
 gi|326408847|gb|ADZ65912.1| DNA polymerase III subunit alpha [Brucella melitensis M28]
 gi|326538562|gb|ADZ86777.1| DNA polymerase III, alpha subunit [Brucella melitensis M5-90]
          Length = 1163

 Score = 1223 bits (3164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/1034 (57%), Positives = 768/1034 (74%), Gaps = 14/1034 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   G+
Sbjct: 16   TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            QPIIGCQLD+   D  DN +  N+ K      P +VL+ +T  GY  ++ LVSR +L   
Sbjct: 76   QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF   E DD +
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVA
Sbjct: 312  AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID
Sbjct: 372  DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P 
Sbjct: 432  FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS
Sbjct: 492  NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS 
Sbjct: 552  ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  
Sbjct: 612  LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 672  YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK
Sbjct: 732  IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLA
Sbjct: 792  AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  
Sbjct: 852  AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +G
Sbjct: 912  MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            FY S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V
Sbjct: 971  FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030

Query: 1019 TFSEPAKEYEANFF 1032
              S+ + ++EA  F
Sbjct: 1031 QLSDASGQFEAVLF 1044


>gi|306843761|ref|ZP_07476360.1| DNA polymerase III, alpha subunit [Brucella sp. BO1]
 gi|306275952|gb|EFM57665.1| DNA polymerase III, alpha subunit [Brucella sp. BO1]
          Length = 1163

 Score = 1223 bits (3164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/1034 (58%), Positives = 767/1034 (74%), Gaps = 14/1034 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD  PAIA+TDTNNLF ALEF+QKA   G+
Sbjct: 16   TPGFVHLRVHSAYSLLEGALPLGKIIKQALADDAPAIAVTDTNNLFGALEFAQKASKDGV 75

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            QPIIGCQLD+   D  DN +  N+ K      P +VL+ +T  GY  ++ LVSR +L   
Sbjct: 76   QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRAVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF   E DD +
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVA
Sbjct: 312  AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID
Sbjct: 372  DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P 
Sbjct: 432  FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PVSL QAI  + +  E R  +P V RLL+I+ KLEGLYRHASTHAAGIVIGDRPLS
Sbjct: 492  NPANPVSLAQAIESEPKINEEREKEPVVGRLLDIALKLEGLYRHASTHAAGIVIGDRPLS 551

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS 
Sbjct: 552  ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  
Sbjct: 612  LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 672  YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK
Sbjct: 732  IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLA
Sbjct: 792  AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  
Sbjct: 852  AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +G
Sbjct: 912  MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            FY S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V
Sbjct: 971  FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030

Query: 1019 TFSEPAKEYEANFF 1032
              S+ + ++EA  F
Sbjct: 1031 QLSDASGQFEAVLF 1044


>gi|254706961|ref|ZP_05168789.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10]
 gi|254709931|ref|ZP_05171742.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94]
 gi|256031424|ref|ZP_05445038.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1]
 gi|256159545|ref|ZP_05457313.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1]
 gi|256254832|ref|ZP_05460368.1| DNA polymerase III subunit alpha [Brucella ceti B1/94]
 gi|261222013|ref|ZP_05936294.1| DNA polymerase III subunit alpha [Brucella ceti B1/94]
 gi|261314424|ref|ZP_05953621.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10]
 gi|261317477|ref|ZP_05956674.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94]
 gi|265988513|ref|ZP_06101070.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1]
 gi|265997977|ref|ZP_06110534.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1]
 gi|260920597|gb|EEX87250.1| DNA polymerase III subunit alpha [Brucella ceti B1/94]
 gi|261296700|gb|EEY00197.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94]
 gi|261303450|gb|EEY06947.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10]
 gi|262552445|gb|EEZ08435.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1]
 gi|264660710|gb|EEZ30971.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1]
          Length = 1163

 Score = 1223 bits (3164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/1034 (57%), Positives = 768/1034 (74%), Gaps = 14/1034 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   G+
Sbjct: 16   TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            QPIIGCQLD+   D  DN +  N+ K      P +VL+ +T  GY  ++ LVSR +L   
Sbjct: 76   QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF   E DD +
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVA
Sbjct: 312  AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID
Sbjct: 372  DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P 
Sbjct: 432  FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS
Sbjct: 492  NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS 
Sbjct: 552  ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  
Sbjct: 612  LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 672  YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK
Sbjct: 732  IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLA
Sbjct: 792  AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  
Sbjct: 852  AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +G
Sbjct: 912  MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            FY S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V
Sbjct: 971  FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030

Query: 1019 TFSEPAKEYEANFF 1032
              S+ + ++EA  F
Sbjct: 1031 QLSDASGQFEAVLF 1044


>gi|148559880|ref|YP_001258802.1| DNA polymerase III subunit alpha [Brucella ovis ATCC 25840]
 gi|148371137|gb|ABQ61116.1| DNA polymerase III, alpha subunit [Brucella ovis ATCC 25840]
          Length = 1163

 Score = 1222 bits (3163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/1034 (57%), Positives = 768/1034 (74%), Gaps = 14/1034 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   G+
Sbjct: 16   TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            QPIIGCQLD+   D  DN +  N+ K      P +VL+ +T  GY  ++ LVSR +L   
Sbjct: 76   QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRIVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF   E DD +
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVA
Sbjct: 312  AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID
Sbjct: 372  DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P 
Sbjct: 432  FCQDRREEVIRYVQEKYGGDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS
Sbjct: 492  NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS 
Sbjct: 552  ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  
Sbjct: 612  LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 672  YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK
Sbjct: 732  IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLA
Sbjct: 792  AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  
Sbjct: 852  AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +G
Sbjct: 912  MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            FY S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V
Sbjct: 971  FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030

Query: 1019 TFSEPAKEYEANFF 1032
              S+ + ++EA  F
Sbjct: 1031 QLSDASGQFEAVLF 1044


>gi|260168558|ref|ZP_05755369.1| DNA polymerase III subunit alpha [Brucella sp. F5/99]
 gi|261758031|ref|ZP_06001740.1| DNA polymerase III subunit alpha [Brucella sp. F5/99]
 gi|261738015|gb|EEY26011.1| DNA polymerase III subunit alpha [Brucella sp. F5/99]
          Length = 1163

 Score = 1222 bits (3163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/1034 (57%), Positives = 768/1034 (74%), Gaps = 14/1034 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   G+
Sbjct: 16   TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            QPIIGCQLD+   D  DN +  N+ K      P +VL+ +T  GY  ++ LVSR +L   
Sbjct: 76   QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF   E DD +
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVA
Sbjct: 312  AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID
Sbjct: 372  DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P 
Sbjct: 432  FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS
Sbjct: 492  NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS 
Sbjct: 552  ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  
Sbjct: 612  LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 672  YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK
Sbjct: 732  IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLA
Sbjct: 792  AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  
Sbjct: 852  AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +G
Sbjct: 912  MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            FY S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V
Sbjct: 971  FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030

Query: 1019 TFSEPAKEYEANFF 1032
              S+ + ++EA  F
Sbjct: 1031 QLSDASGQFEAVLF 1044


>gi|17987420|ref|NP_540054.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M]
 gi|17983111|gb|AAL52318.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str. 16M]
          Length = 1178

 Score = 1222 bits (3163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/1034 (57%), Positives = 768/1034 (74%), Gaps = 14/1034 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   G+
Sbjct: 31   TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 90

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            QPIIGCQLD+   D  DN +  N+ K      P +VL+ +T  GY  ++ LVSR +L   
Sbjct: 91   QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 148

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 149  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 207

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 208  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 267

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF   E DD +
Sbjct: 268  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 326

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVA
Sbjct: 327  AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 386

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID
Sbjct: 387  DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 446

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P 
Sbjct: 447  FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 506

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS
Sbjct: 507  NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 566

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS 
Sbjct: 567  ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 626

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  
Sbjct: 627  LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 686

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 687  YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 746

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK
Sbjct: 747  IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 806

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLA
Sbjct: 807  AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 866

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  
Sbjct: 867  AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 926

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +G
Sbjct: 927  MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 985

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            FY S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V
Sbjct: 986  FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1045

Query: 1019 TFSEPAKEYEANFF 1032
              S+ + ++EA  F
Sbjct: 1046 QLSDASGQFEAVLF 1059


>gi|254718932|ref|ZP_05180743.1| DNA polymerase III subunit alpha [Brucella sp. 83/13]
 gi|265983919|ref|ZP_06096654.1| DNA polymerase III subunit alpha [Brucella sp. 83/13]
 gi|306838837|ref|ZP_07471668.1| DNA polymerase III, alpha subunit [Brucella sp. NF 2653]
 gi|264662511|gb|EEZ32772.1| DNA polymerase III subunit alpha [Brucella sp. 83/13]
 gi|306406121|gb|EFM62369.1| DNA polymerase III, alpha subunit [Brucella sp. NF 2653]
          Length = 1163

 Score = 1222 bits (3162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/1034 (57%), Positives = 768/1034 (74%), Gaps = 14/1034 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   G+
Sbjct: 16   TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            QPIIGCQLD+   D  DN +  N+ K      P +VL+ +T  GY  ++ LVSR +L   
Sbjct: 76   QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  R+   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARMAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF   E DD +
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVA
Sbjct: 312  AALQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID
Sbjct: 372  DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P 
Sbjct: 432  FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS
Sbjct: 492  NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS 
Sbjct: 552  ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  
Sbjct: 612  LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 672  YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK
Sbjct: 732  IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLA
Sbjct: 792  AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  
Sbjct: 852  AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +G
Sbjct: 912  MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPKETLILPPTAPWLPSEMLHREFQAVG 970

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            FY S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V
Sbjct: 971  FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030

Query: 1019 TFSEPAKEYEANFF 1032
              S+ + ++EA  F
Sbjct: 1031 QLSDASGQFEAVLF 1044


>gi|256369256|ref|YP_003106764.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915]
 gi|255999416|gb|ACU47815.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915]
          Length = 1163

 Score = 1222 bits (3161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/1034 (57%), Positives = 767/1034 (74%), Gaps = 14/1034 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD  PAIA+TDTNNLF ALEF+QKA   G+
Sbjct: 16   TPGFVHLRVHSAYSLLEGALPLGKIIKQALADDAPAIAVTDTNNLFGALEFAQKASKDGV 75

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            QPIIGCQLD+   D  DN +  N+ K      P +VL+ +T  GY  ++ LVSR +L   
Sbjct: 76   QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF   E DD +
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVA
Sbjct: 312  AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID
Sbjct: 372  DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P 
Sbjct: 432  FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS
Sbjct: 492  NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS 
Sbjct: 552  ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  
Sbjct: 612  LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 672  YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK
Sbjct: 732  IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLA
Sbjct: 792  AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  
Sbjct: 852  AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +G
Sbjct: 912  MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            FY S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V
Sbjct: 971  FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030

Query: 1019 TFSEPAKEYEANFF 1032
              S+ + ++EA  F
Sbjct: 1031 QLSDASGQFEAVLF 1044


>gi|254713932|ref|ZP_05175743.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1]
 gi|254717010|ref|ZP_05178821.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1]
 gi|261218817|ref|ZP_05933098.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1]
 gi|261321684|ref|ZP_05960881.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1]
 gi|260923906|gb|EEX90474.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1]
 gi|261294374|gb|EEX97870.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1]
          Length = 1163

 Score = 1221 bits (3160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/1034 (57%), Positives = 767/1034 (74%), Gaps = 14/1034 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   G+
Sbjct: 16   TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            QPIIGCQLD+   D  DN +  N+ K      P +VL+ +T  GY  ++ LVSR +L   
Sbjct: 76   QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF   E DD +
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVA
Sbjct: 312  AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID
Sbjct: 372  DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P 
Sbjct: 432  FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS
Sbjct: 492  NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS 
Sbjct: 552  ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  
Sbjct: 612  LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 672  YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK
Sbjct: 732  IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLA
Sbjct: 792  AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKG G     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  
Sbjct: 852  AIKGAGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +G
Sbjct: 912  MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            FY S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V
Sbjct: 971  FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030

Query: 1019 TFSEPAKEYEANFF 1032
              S+ + ++EA  F
Sbjct: 1031 QLSDASGQFEAVLF 1044


>gi|23501712|ref|NP_697839.1| DNA polymerase III subunit alpha [Brucella suis 1330]
 gi|23347636|gb|AAN29754.1| DNA polymerase III, alpha subunit [Brucella suis 1330]
          Length = 1163

 Score = 1221 bits (3160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/1034 (57%), Positives = 768/1034 (74%), Gaps = 14/1034 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   G+
Sbjct: 16   TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            QPIIGCQLD+   D  DN +  N+ K      P +VL+ +T  GY  ++ LVSR +L   
Sbjct: 76   QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF   E DD +
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVA
Sbjct: 312  AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID
Sbjct: 372  DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P 
Sbjct: 432  FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS
Sbjct: 492  NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS 
Sbjct: 552  ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  
Sbjct: 612  LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 672  YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA++K
Sbjct: 732  IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYIK 791

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLA
Sbjct: 792  AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  
Sbjct: 852  AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +G
Sbjct: 912  MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            FY S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V
Sbjct: 971  FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030

Query: 1019 TFSEPAKEYEANFF 1032
              S+ + ++EA  F
Sbjct: 1031 QLSDASGQFEAVLF 1044


>gi|306841939|ref|ZP_07474617.1| DNA polymerase III, alpha subunit [Brucella sp. BO2]
 gi|306287972|gb|EFM59380.1| DNA polymerase III, alpha subunit [Brucella sp. BO2]
          Length = 1163

 Score = 1221 bits (3159), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/1034 (57%), Positives = 767/1034 (74%), Gaps = 14/1034 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD  PAIA+TDTNNLF ALEF+QKA   G+
Sbjct: 16   TPGFVHLRVHSAYSLLEGALPLGKIIKQALADDAPAIAVTDTNNLFGALEFAQKASKDGV 75

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            QPIIGCQLD+   D  DN +  N+ K      P +VL+ +T  GY  ++ LVSR +L   
Sbjct: 76   QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  R+   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARMAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRAVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF   E DD +
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVA
Sbjct: 312  AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID
Sbjct: 372  DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P 
Sbjct: 432  FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS
Sbjct: 492  NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS 
Sbjct: 552  ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  
Sbjct: 612  LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 672  YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK
Sbjct: 732  IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLA
Sbjct: 792  AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  
Sbjct: 852  AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +G
Sbjct: 912  MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPKETLILPPTAPWLPSEMLHREFQAVG 970

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            FY S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V
Sbjct: 971  FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030

Query: 1019 TFSEPAKEYEANFF 1032
              S+ + ++EA  F
Sbjct: 1031 QLSDASGQFEAVLF 1044


>gi|294852181|ref|ZP_06792854.1| DNA polymerase III subunit alpha [Brucella sp. NVSL 07-0026]
 gi|294820770|gb|EFG37769.1| DNA polymerase III subunit alpha [Brucella sp. NVSL 07-0026]
          Length = 1188

 Score = 1220 bits (3157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/1034 (57%), Positives = 767/1034 (74%), Gaps = 14/1034 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   G+
Sbjct: 41   TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 100

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            QPIIGCQLD+   D  DN +  N+ K      P +VL+ +T  GY  ++ LVSR +L   
Sbjct: 101  QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 158

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 159  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 217

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 218  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 277

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF   E DD +
Sbjct: 278  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 336

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVA
Sbjct: 337  AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 396

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID
Sbjct: 397  DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 456

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P 
Sbjct: 457  FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 516

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS
Sbjct: 517  NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 576

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLK LT+LQ ++  +A++G+ +DLS 
Sbjct: 577  ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKMLTVLQTAVKLVARKGIDIDLSH 636

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  
Sbjct: 637  LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 696

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 697  YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 756

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK
Sbjct: 757  IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 816

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLA
Sbjct: 817  AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 876

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  
Sbjct: 877  AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 936

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +G
Sbjct: 937  MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 995

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            FY S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V
Sbjct: 996  FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1055

Query: 1019 TFSEPAKEYEANFF 1032
              S+ + ++EA  F
Sbjct: 1056 QLSDASGQFEAVLF 1069


>gi|254701591|ref|ZP_05163419.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513]
 gi|261752144|ref|ZP_05995853.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513]
 gi|261741897|gb|EEY29823.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513]
          Length = 1163

 Score = 1219 bits (3153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/1034 (57%), Positives = 767/1034 (74%), Gaps = 14/1034 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   G+
Sbjct: 16   TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            QPIIGCQLD+   D  DN +  N+ K      P +VL+ +T  GY  ++ LVSR +L   
Sbjct: 76   QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPR +  E DD +
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPR-LTGESDDPE 311

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVA
Sbjct: 312  AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AYALTIT +DPLRFSLLFERFLNPDR+SMPDFDID
Sbjct: 372  DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITGVDPLRFSLLFERFLNPDRVSMPDFDID 431

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P 
Sbjct: 432  FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS
Sbjct: 492  NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS 
Sbjct: 552  ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  
Sbjct: 612  LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 672  YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK
Sbjct: 732  IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLA
Sbjct: 792  AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  
Sbjct: 852  AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +G
Sbjct: 912  MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            FY S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V
Sbjct: 971  FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030

Query: 1019 TFSEPAKEYEANFF 1032
              S+ + ++EA  F
Sbjct: 1031 QLSDASGQFEAVLF 1044


>gi|254693562|ref|ZP_05155390.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya]
 gi|261213827|ref|ZP_05928108.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya]
 gi|260915434|gb|EEX82295.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya]
          Length = 1163

 Score = 1219 bits (3153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/1034 (57%), Positives = 767/1034 (74%), Gaps = 14/1034 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   G+
Sbjct: 16   TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            QPIIGCQLD+   D  DN +  N+ K      P +VL+ +T  GY  ++ LVSR +L   
Sbjct: 76   QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TPDH LK+R+EM  +F+DLPE+LENTVEIA RCS+  Q   PILPRF   E DD +
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPESLENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVA
Sbjct: 312  AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID
Sbjct: 372  DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P 
Sbjct: 432  FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PVSL QAI  + +  E R  +  V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS
Sbjct: 492  NPANPVSLAQAIESEPKINEEREKESVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS 
Sbjct: 552  ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  
Sbjct: 612  LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 672  YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK
Sbjct: 732  IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLA
Sbjct: 792  AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  
Sbjct: 852  AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +G
Sbjct: 912  MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            FY S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V
Sbjct: 971  FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030

Query: 1019 TFSEPAKEYEANFF 1032
              S+ + ++EA  F
Sbjct: 1031 QLSDASGQFEAVLF 1044


>gi|237815260|ref|ZP_04594258.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A]
 gi|237790097|gb|EEP64307.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A]
          Length = 1190

 Score = 1218 bits (3152), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/1034 (57%), Positives = 766/1034 (74%), Gaps = 14/1034 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   G+
Sbjct: 43   TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 102

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            QPIIGCQLD+   D  DN +  N+ K      P +VL+ +T  GY  ++ LVSR +L   
Sbjct: 103  QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 160

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 161  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 219

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + F   ED+EAHD L+A+A   ++S  D
Sbjct: 220  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFPKAEDFEAHDALLAIAEGQILSNDD 279

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF   E DD +
Sbjct: 280  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 338

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVA
Sbjct: 339  AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 398

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID
Sbjct: 399  DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 458

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P 
Sbjct: 459  FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 518

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS
Sbjct: 519  NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 578

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS 
Sbjct: 579  ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 638

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  
Sbjct: 639  LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 698

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 699  YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 758

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK
Sbjct: 759  IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 818

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLA
Sbjct: 819  AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 878

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIK VG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  
Sbjct: 879  AIKSVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 938

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +G
Sbjct: 939  MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 997

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            FY S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V
Sbjct: 998  FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1057

Query: 1019 TFSEPAKEYEANFF 1032
              S+ + ++EA  F
Sbjct: 1058 QLSDASGQFEAVLF 1071


>gi|62289774|ref|YP_221567.1| DNA polymerase III subunit alpha [Brucella abortus bv. 1 str. 9-941]
 gi|82699702|ref|YP_414276.1| DNA polymerase III subunit alpha [Brucella melitensis biovar Abortus
            2308]
 gi|189024017|ref|YP_001934785.1| DNA polymerase III subunit alpha [Brucella abortus S19]
 gi|254697213|ref|ZP_05159041.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str.
            86/8/59]
 gi|254730110|ref|ZP_05188688.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292]
 gi|260545478|ref|ZP_05821219.1| DNA polymerase III subunit alpha subunit [Brucella abortus NCTC 8038]
 gi|260757800|ref|ZP_05870148.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292]
 gi|260761623|ref|ZP_05873966.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str.
            86/8/59]
 gi|62195906|gb|AAX74206.1| DnaE-2, DNA polymerase III, alpha subunit [Brucella abortus bv. 1
            str. 9-941]
 gi|82615803|emb|CAJ10801.1| Phosphoesterase PHP, N-terminal:PHP domain C-terminal region:OB-fold
            nucleic acid binding domain:DNA polymerase III alpha sub
            [Brucella melitensis biovar Abortus 2308]
 gi|189019589|gb|ACD72311.1| DNA polymerase III subunit alpha [Brucella abortus S19]
 gi|260096885|gb|EEW80760.1| DNA polymerase III subunit alpha subunit [Brucella abortus NCTC 8038]
 gi|260668118|gb|EEX55058.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292]
 gi|260672055|gb|EEX58876.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str.
            86/8/59]
          Length = 1163

 Score = 1218 bits (3152), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/1034 (57%), Positives = 766/1034 (74%), Gaps = 14/1034 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   G+
Sbjct: 16   TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            QPIIGCQLD+   D  DN +  N+ K      P +VL+ +T  GY  ++ LVSR +L   
Sbjct: 76   QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + F   ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFPKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF   E DD +
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVA
Sbjct: 312  AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID
Sbjct: 372  DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P 
Sbjct: 432  FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS
Sbjct: 492  NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS 
Sbjct: 552  ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  
Sbjct: 612  LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 672  YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK
Sbjct: 732  IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLA
Sbjct: 792  AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIK VG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  
Sbjct: 852  AIKSVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +G
Sbjct: 912  MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            FY S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V
Sbjct: 971  FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030

Query: 1019 TFSEPAKEYEANFF 1032
              S+ + ++EA  F
Sbjct: 1031 QLSDASGQFEAVLF 1044


>gi|254689079|ref|ZP_05152333.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870]
 gi|256257328|ref|ZP_05462864.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68]
 gi|260754577|ref|ZP_05866925.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870]
 gi|260883604|ref|ZP_05895218.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68]
 gi|297248177|ref|ZP_06931895.1| DNA polymerase III subunit alpha [Brucella abortus bv. 5 str. B3196]
 gi|260674685|gb|EEX61506.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870]
 gi|260873132|gb|EEX80201.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68]
 gi|297175346|gb|EFH34693.1| DNA polymerase III subunit alpha [Brucella abortus bv. 5 str. B3196]
          Length = 1163

 Score = 1217 bits (3150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/1034 (57%), Positives = 766/1034 (74%), Gaps = 14/1034 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   G+
Sbjct: 16   TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            QPIIGCQLD+   D  DN +  N+ K      P +VL+ +T  GY  ++ LVSR +L   
Sbjct: 76   QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + F   ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFPKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF   E DD +
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVA
Sbjct: 312  AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID
Sbjct: 372  DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P 
Sbjct: 432  FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS
Sbjct: 492  NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD R D+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS 
Sbjct: 552  ELVPMYRDPRFDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  
Sbjct: 612  LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 672  YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK
Sbjct: 732  IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLA
Sbjct: 792  AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  
Sbjct: 852  AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +G
Sbjct: 912  MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            FY S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V
Sbjct: 971  FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030

Query: 1019 TFSEPAKEYEANFF 1032
              S+ + ++EA  F
Sbjct: 1031 QLSDASGQFEAVLF 1044


>gi|13471011|ref|NP_102580.1| DNA polymerase III subunit alpha [Mesorhizobium loti MAFF303099]
 gi|14021755|dbj|BAB48366.1| DNA polymerase III alpha subunit [Mesorhizobium loti MAFF303099]
          Length = 1175

 Score = 1213 bits (3138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/1029 (57%), Positives = 757/1029 (73%), Gaps = 8/1029 (0%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS+YSLLEGAL L  I+     D+ PAIA+TDTNNLF ALEF+QKA   GIQPI
Sbjct: 29   FVHLRVHSAYSLLEGALQLGKIVGHAVKDEAPAIAVTDTNNLFGALEFAQKAVKDGIQPI 88

Query: 71   IGCQLDIDMQ-DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IGCQ+ +    +N       +   P +  +VLL +T  GY  L+ LVSR+YL     ++V
Sbjct: 89   IGCQIALAFSGENSDGQRDRRRQGPEMRPVVLLAATEAGYSNLVRLVSRVYLETPPGEAV 148

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L E   +GLI L+GG  GPI  A   +   +AE RLLT K LFGDRLYV L R 
Sbjct: 149  HLTTEML-EGKADGLICLSGGPRGPIGNALKEDRRDLAEVRLLTLKTLFGDRLYVELDRV 207

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             GYDR  E Q + LAY HELPLVATN + F S +DYEAHD L+A+A  +VV+   R R++
Sbjct: 208  AGYDRVIEHQTIDLAYAHELPLVATNEAFFSSRDDYEAHDALIAIAEGSVVAVDTRRRLS 267

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            PD++L++++EM  +F+DLPEA++NTVEIA RCS+  +  +PILPRF   +  D    E+ 
Sbjct: 268  PDNFLRSQAEMAQLFADLPEAIDNTVEIALRCSYYPKTRSPILPRFTGGDASDKDAAEKA 327

Query: 310  E---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E   L  +A  GL+ RLA      GY  + YR+RL+FEL +I +MKF GYFLIVADFI+W
Sbjct: 328  EAAELARQAREGLDARLALHGPTPGYTVEQYRERLEFELGIIEKMKFPGYFLIVADFIKW 387

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGSGAGS+ AY+ TITDIDPLRFSLLFERFLNPDR+SMPDFDIDFCQDR
Sbjct: 388  AKAQGIPVGPGRGSGAGSLVAYSTTITDIDPLRFSLLFERFLNPDRVSMPDFDIDFCQDR 447

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVIRYVQ KYG ++V QIITFG+LQA+A LRDVGR LQMPY QVD+L K++P +PA+P
Sbjct: 448  REEVIRYVQQKYGRDQVGQIITFGTLQARAVLRDVGRVLQMPYGQVDKLSKMVPQNPANP 507

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V L  AIA++ RF E    +P V  LL+++QKLEGLYRHASTHAAGIVIGDRPLS+LVPM
Sbjct: 508  VKLADAIANEPRFAEEAEKEPIVQTLLDMAQKLEGLYRHASTHAAGIVIGDRPLSELVPM 567

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++  + +RG+ +DL+ IP DD
Sbjct: 568  YRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLETAVKLIRRRGIDIDLATIPLDD 627

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             ETY +L+    +G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN RK
Sbjct: 628  PETYAMLSRGEVVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPTYNARK 687

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+E++ SIHP ID ++KETQGVI+YQEQVMQIAQ LSGYSL EAD+LRRAMGKKI+ EM
Sbjct: 688  HGEEEMASIHPKIDHLVKETQGVIVYQEQVMQIAQELSGYSLGEADLLRRAMGKKIRAEM 747

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            DKQ+ERF+SGA + G+SK  A  IF+LLAKFADYGFNKSHAAAYAV+SYQTA++K HYPV
Sbjct: 748  DKQRERFVSGAVERGVSKPQADFIFDLLAKFADYGFNKSHAAAYAVVSYQTAYLKAHYPV 807

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EFLAASMTL+M N +K+  F QDA +  I+++ PSV T    F+VG+NRIYYS+AA+KGV
Sbjct: 808  EFLAASMTLDMGNTDKLADFRQDALRLGIEVLAPSVMTSFRPFEVGENRIYYSMAALKGV 867

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G     HI+    +KPF +L DFC RVD K + +RV ESL+ AGALDCFG+ R Q++  +
Sbjct: 868  GDAAVEHIVAVRGEKPFKNLADFCERVDPKIVGKRVFESLIMAGALDCFGHDRAQMMAGV 927

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            + +   A   ++N  +   +IF    G  S  + L       ++ R   E +V+GFY S 
Sbjct: 928  ERMMGLASLAQQNAVSGQADIFGASLGAQSQALNLPATDPWLAADRLHREFQVVGFYLSA 987

Query: 966  HPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            HPLD YK  L+KM ++ + E S A  RG +  RLA  V SKQ++KTR G+++G V FS+ 
Sbjct: 988  HPLDEYKAALQKMRVQNWAEFSAAVKRGASAGRLAGTVTSKQERKTRTGNKMGVVAFSDT 1047

Query: 1024 AKEYEANFF 1032
            + +YEA  F
Sbjct: 1048 SGQYEAVLF 1056


>gi|121602736|ref|YP_989159.1| DNA polymerase III subunit alpha [Bartonella bacilliformis KC583]
 gi|120614913|gb|ABM45514.1| DNA polymerase III, alpha subunit [Bartonella bacilliformis KC583]
          Length = 1161

 Score = 1211 bits (3132), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/1029 (57%), Positives = 760/1029 (73%), Gaps = 7/1029 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS+YSLLEGA+ +  I+    +D  PAIAITDTNNLF ALEFSQ   A GIQ
Sbjct: 16   PRFIHLRVHSAYSLLEGAIKIPQIVQHAVSDNAPAIAITDTNNLFGALEFSQYCFAEGIQ 75

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQ+ ID  D    +   K  +P+  PS+VL  ++  GY  L+ LVSR YL +    
Sbjct: 76   PIIGCQIAIDFGDKDDHSRLAKYHYPSDFPSVVLFAASKTGYACLVRLVSRAYLDEHNTN 135

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL    +EG+I LTGGS GPI+ A   +  + A +RL+  K++FGDRLY+ LQ
Sbjct: 136  FPHIKADWLLS-QSEGIIALTGGSGGPINLALAEDKKEWAIERLMDLKRIFGDRLYIELQ 194

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  YDR  E++++ LAY H++PLVATN + FL+++ YEAHD LMAVA   VVS  +R R
Sbjct: 195  RHGSYDRKVEAELIDLAYVHQIPLVATNEAFFLNKKGYEAHDALMAVAEGQVVSNPNRKR 254

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD-DIQKE 306
            VTPDHYLK++ EMV++FSDLPEALEN+VEIA RC     + +PILPRF E+  D +   E
Sbjct: 255  VTPDHYLKSQDEMVTLFSDLPEALENSVEIALRCHAFTPMRSPILPRFTERSVDSNAALE 314

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E+ EL N+A  GL++RL    +A+GY   DY QRLD+E+ VI RM+FSGYFLIV+DFI+W
Sbjct: 315  EDKELINQAKDGLKIRLETIGLAEGYTLADYEQRLDYEIAVITRMQFSGYFLIVSDFIKW 374

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQDR
Sbjct: 375  AKLHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRISMPDFDIDFCQDR 434

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI YVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QVD L KL+   P + 
Sbjct: 435  REEVIHYVQKKYGCDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVSATPGNN 494

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            + L QAI D+ +F E    +P + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVPM
Sbjct: 495  IELAQAIKDEPKFAEEAKKEPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVPM 554

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++GVK+DLS I  +D
Sbjct: 555  YRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARKGVKIDLSCISLND 614

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             ETY +L    T+G+FQ+ES GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN RK
Sbjct: 615  EETYAMLARGNTVGVFQVESPGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNARK 674

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+EKI SIHP ID ++KETQGVI+YQEQVMQIAQ LSGYSL EAD+LRRAMGKKI +EM
Sbjct: 675  HGQEKITSIHPKIDHLVKETQGVIVYQEQVMQIAQELSGYSLGEADLLRRAMGKKIHKEM 734

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             KQ+ RF+SGA   GI K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK HYPV
Sbjct: 735  QKQRTRFVSGAVDRGIDKDQADMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKAHYPV 794

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EFLAASMT +M N +K+  F ++A +  IQ++ P V T    F++G+N IYYSL+AIKGV
Sbjct: 795  EFLAASMTYDMMNADKLNDFRREALRLEIQVIAPCVQTSHRIFEIGENCIYYSLSAIKGV 854

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G +   HI+    +KPF  LEDFC R+D + +N+R +ESL++AGA DCFG +R  LL SL
Sbjct: 855  GDSVVDHIVACRGNKPFKDLEDFCGRIDPRVINKRAMESLIYAGAFDCFGIAREVLLASL 914

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            + +   A  +  N ++   +IF    G   +   L + +  + + +  +E +V+GFYFS 
Sbjct: 915  ETLNARAIRIFDNNSSGQTDIFGMVDGP-KEPFILSQATPWSLAEKLHHEFQVIGFYFSA 973

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            HPLD Y+ IL K  ++ +      ++G     RLA  VV+KQ +KT+ G +IG + FS+ 
Sbjct: 974  HPLDEYQTILAKKRVQTWNNFSNAVKGGATAARLAGTVVTKQIRKTKSGKKIGIIQFSDT 1033

Query: 1024 AKEYEANFF 1032
            + +YE   F
Sbjct: 1034 SGQYETVMF 1042


>gi|319783852|ref|YP_004143328.1| DNA polymerase III subunit alpha [Mesorhizobium ciceri biovar
            biserrulae WSM1271]
 gi|317169740|gb|ADV13278.1| DNA polymerase III, alpha subunit [Mesorhizobium ciceri biovar
            biserrulae WSM1271]
          Length = 1175

 Score = 1203 bits (3112), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/1029 (56%), Positives = 755/1029 (73%), Gaps = 8/1029 (0%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS+YSLLEGAL +  ++     D+ PAIA+TDTNNLF ALEF+QKA   GIQPI
Sbjct: 29   FVHLRVHSAYSLLEGALQIGKVVAHAVKDEAPAIAVTDTNNLFGALEFAQKAVKDGIQPI 88

Query: 71   IGCQLDIDMQ-DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IGCQ  +    +N       +   P +  +VLL +T  GY  L+ LVSR+YL     ++V
Sbjct: 89   IGCQTALAFSGENSDGQRDRRRQGPDMRPVVLLAATEAGYSNLVRLVSRVYLETPPGEAV 148

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +  + + E   +GLI L+GG  GPI  A   +   +AE RLLT K +FGDRLYV L R 
Sbjct: 149  HLT-TEMMEGYCDGLICLSGGPRGPIGTALKEDRRDLAEARLLTLKDMFGDRLYVELDRV 207

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             GYDR  E   + LAY HELPLVATN + F S +DY+AHD L+A+A  +VV+  +R R++
Sbjct: 208  SGYDRVIEKSSIDLAYAHELPLVATNEAFFSSRDDYDAHDALIAIAEGSVVAADNRRRLS 267

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD---IQKE 306
            PD++L+++++M  +F+DLPEA++NTVEIA RCS+  +   PILPRF   +  D     + 
Sbjct: 268  PDNFLRSQADMARLFADLPEAIDNTVEIALRCSYYPKNRNPILPRFTGGDVADNDAAVQA 327

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E +EL  +A  GL+ RLA      GY  + YR+RL+FEL +I +MKF GYFLIVADFI+W
Sbjct: 328  EADELARQAHEGLDARLAMHGPTAGYTVEQYRERLNFELGIITKMKFPGYFLIVADFIKW 387

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGSGAGS+ AY+ TITDIDPLRFSLLFERFLNPDR+SMPDFDIDFCQDR
Sbjct: 388  AKAQGIPVGPGRGSGAGSLVAYSTTITDIDPLRFSLLFERFLNPDRVSMPDFDIDFCQDR 447

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVIRYVQ KYG ++V QIITFG+LQA+A LRDVGR LQMPY QVD+L K++P +PA+P
Sbjct: 448  REEVIRYVQQKYGRDQVGQIITFGTLQARAVLRDVGRVLQMPYGQVDKLSKMVPQNPANP 507

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V L  AIA++ RF E    +P V  LL+++QKLEGLYRHASTHAAGIVIGDRPLS+LVPM
Sbjct: 508  VKLADAIANEPRFAEEAEREPIVQTLLDMAQKLEGLYRHASTHAAGIVIGDRPLSELVPM 567

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++  + +RG+++DL+ IP DD
Sbjct: 568  YRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLETAVKLIRRRGIEIDLATIPLDD 627

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             ETY +L+    +G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN RK
Sbjct: 628  PETYAMLSRGEVVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPTYNARK 687

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+E++ SIHP ID ++KETQGVI+YQEQVMQIAQ LSGYSL EAD+LRRAMGKKI+ EM
Sbjct: 688  HGEEEMASIHPKIDHLVKETQGVIVYQEQVMQIAQELSGYSLGEADLLRRAMGKKIRAEM 747

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            DKQ+ERF+SGA + G+ K  A  IF+LLAKFADYGFNKSHAAAYAV+SYQTA++K HYPV
Sbjct: 748  DKQRERFVSGAVERGVGKPQADFIFDLLAKFADYGFNKSHAAAYAVVSYQTAYLKAHYPV 807

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EFLAASMTL+M N +K+  F QDA +  I+++ PSV +    F+VG+NRIYYSLAA+KGV
Sbjct: 808  EFLAASMTLDMGNTDKLADFRQDALRLGIEVLAPSVTSSFRPFEVGENRIYYSLAALKGV 867

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G     HI+    +KPF +L DFC RVD K + +RV ESL+ AGALDCFG+ R  ++  +
Sbjct: 868  GDAAVEHIVAQRGEKPFKNLADFCERVDPKIVGKRVFESLIMAGALDCFGHDRASMMAGV 927

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            + +   A   ++N  +   +IF    G  S  + L       ++ R   E +V+GFY S 
Sbjct: 928  ERMMGLASLAQQNAVSGQHDIFGASLGAQSQALNLPATEPWLAADRLHREFQVVGFYLSA 987

Query: 966  HPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            HPLD YK  L+KM ++ + E S A  RG    RLA  V SKQ++KTR G+++G + FS+ 
Sbjct: 988  HPLDEYKAALQKMRVQTWAEFSAAVKRGAAAGRLAGTVTSKQERKTRTGNKMGVIAFSDT 1047

Query: 1024 AKEYEANFF 1032
            + +YEA  F
Sbjct: 1048 SGQYEAVLF 1056


>gi|260463915|ref|ZP_05812111.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum
            WSM2075]
 gi|259030290|gb|EEW31570.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum
            WSM2075]
          Length = 1175

 Score = 1200 bits (3105), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 589/1029 (57%), Positives = 754/1029 (73%), Gaps = 8/1029 (0%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS+YSLLEGAL +  I+     D+ PAIA+TDTNNLF ALEF+QKA   GIQPI
Sbjct: 29   FVHLRVHSAYSLLEGALQIGKIVGHAVKDEAPAIAVTDTNNLFGALEFAQKAVKDGIQPI 88

Query: 71   IGCQLDIDMQ-DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IGCQ+ +    +N       +   P +  +VLL +T  GY  L+ LVS +YL     ++V
Sbjct: 89   IGCQVALAFSGENSDGQRDRRRQGPEMRPVVLLAATEAGYSNLVRLVSGVYLETPPGEAV 148

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L    T+GLI L+GG  GPI  A   +   +AE RLLT K LFGDRLYV L R 
Sbjct: 149  HLTTETLAG-QTDGLICLSGGPRGPIGNALKEDRRDLAETRLLTLKTLFGDRLYVELDRV 207

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             GYDR  E   ++LAY HELPLVATN + F S +DYEAHD L+A+A  +VV+   R R++
Sbjct: 208  AGYDRVIEHSTIELAYAHELPLVATNEAFFSSRDDYEAHDALIAIAEGSVVAVDTRRRLS 267

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            PD++L+++++M  +F+DLPEA++NT+EIA RCS+  +  +PILPRF   +  D    E+ 
Sbjct: 268  PDNFLRSQADMAKLFADLPEAIDNTIEIALRCSYYPKTRSPILPRFTGGDTTDKDAAEKA 327

Query: 310  E---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E   L  +A  GL+ RLA      GY  + YR+RL+FEL +I +MKF GYFLIVADFI+W
Sbjct: 328  EAEELARQAREGLDARLALHGPTPGYTVEQYRERLEFELGIIEKMKFPGYFLIVADFIKW 387

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGSGAGS+ AY+ TITDIDPLRFSLLFERFLNPDR+SMPDFDIDFCQDR
Sbjct: 388  AKAQGIPVGPGRGSGAGSLVAYSTTITDIDPLRFSLLFERFLNPDRVSMPDFDIDFCQDR 447

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVIRYVQ KYG ++V QIITFG+LQA+A LRDVGR LQMPY QVD+L K++P +PA+P
Sbjct: 448  REEVIRYVQQKYGRDQVGQIITFGTLQARAVLRDVGRVLQMPYGQVDKLSKMVPQNPANP 507

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V L  AIA++ RF E    +P V  LL+++QKLEGLYRHASTHAAGIVIGDRPLS+LVPM
Sbjct: 508  VKLADAIANEPRFAEEAEKEPIVQTLLDMAQKLEGLYRHASTHAAGIVIGDRPLSELVPM 567

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++  + +RG+ +DL+ IP DD
Sbjct: 568  YRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLETAVKLIRRRGIDIDLATIPLDD 627

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +TY +L+    +G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN RK
Sbjct: 628  PDTYSMLSRGEVVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPTYNARK 687

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+E++ SIHP ID ++KETQGVI+YQEQVMQIAQ LSGYSL EAD+LRRAMGKKI+ EM
Sbjct: 688  HGEEEMASIHPKIDHLVKETQGVIVYQEQVMQIAQELSGYSLGEADLLRRAMGKKIRAEM 747

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            DKQ+ERF+SGA + G++K  A  IF+LLAKFADYGFNKSHAAAYAV+SYQTA++K HYPV
Sbjct: 748  DKQRERFVSGAVERGVAKPQADFIFDLLAKFADYGFNKSHAAAYAVVSYQTAYLKAHYPV 807

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EFLAASMTL+M N +K+  F QDA +  I+++ PSV T    F+VG+NRIYYS+AA+KGV
Sbjct: 808  EFLAASMTLDMGNTDKLADFRQDALRLGIEVLAPSVMTSFRAFEVGENRIYYSMAALKGV 867

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G     HI+    +KPF +L DFC RVD K + +RV ESL+ AGALDCFG+ R  +L  +
Sbjct: 868  GDAAVEHIVAVRGEKPFKNLADFCERVDPKIVGKRVFESLIMAGALDCFGHDRAAMLAGV 927

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            + +   A   ++N  +   +IF    G  S  + L       ++ R   E +V+GFY S 
Sbjct: 928  ERMMGLASLAQQNAVSGQADIFGASLGAQSQALNLPATDPWLAADRLHREFQVVGFYLSA 987

Query: 966  HPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            HPLD YK  L+KM ++ + E S A  RG    RLA  V SKQ++KTR G+++G V FS+ 
Sbjct: 988  HPLDEYKAALQKMRVQNWAEFSAAVKRGATAGRLAGTVTSKQERKTRTGNKMGVVAFSDT 1047

Query: 1024 AKEYEANFF 1032
            + +YEA  F
Sbjct: 1048 SGQYEAVLF 1056


>gi|110633608|ref|YP_673816.1| DNA polymerase III subunit alpha [Mesorhizobium sp. BNC1]
 gi|110284592|gb|ABG62651.1| DNA polymerase III, alpha subunit [Chelativorans sp. BNC1]
          Length = 1172

 Score = 1199 bits (3102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/1031 (57%), Positives = 763/1031 (74%), Gaps = 10/1031 (0%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F+HL+VHS+YSLLEGAL L  I+     D+ PAIA  DTNNLF ALEF+QKA   GIQP
Sbjct: 25   NFIHLRVHSAYSLLEGALPLGKIIGHALKDEAPAIATADTNNLFGALEFAQKAVKDGIQP 84

Query: 70   IIGCQLDIDMQDNLKMTNQG--KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IIGCQLD+   D      +   +  F     +VL+ +T  GY  L+ L+SR YL ++  +
Sbjct: 85   IIGCQLDVAFDDAFAEARRAASRKSFADYDPLVLIAATEAGYANLVRLMSRAYLDNEAGE 144

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WLQE  +EG+I LTGG  GPI      + +++AE RLL  ++ +GDRLYV L+
Sbjct: 145  PPHVAADWLQE-HSEGIICLTGGPRGPIGAPLKADRAELAEARLLLLRETYGDRLYVELE 203

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R +GYDR  E+  V LAY H+LPLVATN + F + +D++AHD L+A+A  +V++  DR R
Sbjct: 204  RLQGYDRNLEAAAVNLAYRHDLPLVATNEAFFPTRDDFDAHDALIAIAEGSVIASDDRRR 263

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD---IQ 304
            +TPD+YLK ++EM ++F+DLPEAL+NT+E+ARRCS+  +   PILPRF   E  D     
Sbjct: 264  LTPDNYLKTQAEMAALFADLPEALDNTLEVARRCSYYPKTRKPILPRFTGDEAGDEAAAL 323

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + E +ELR +A  GL+ RLA   IA+G+  ++Y  RL++EL VI RMKF GYFLIVADFI
Sbjct: 324  QAEADELRRQAREGLDKRLAIQGIAEGHSEEEYAARLEYELGVIERMKFPGYFLIVADFI 383

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK ++IPVGPGRGSGAGS+ AYALTITDIDPLRFSLLFERFLNPDR+SMPDFDIDFCQ
Sbjct: 384  KWAKAHDIPVGPGRGSGAGSLVAYALTITDIDPLRFSLLFERFLNPDRVSMPDFDIDFCQ 443

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVIRYVQ KYG ++V QIITFG+LQA+A LRDVGR LQMPY QVDRLCK++P++PA
Sbjct: 444  DRREEVIRYVQQKYGRDQVGQIITFGTLQARAVLRDVGRVLQMPYGQVDRLCKMVPSNPA 503

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +P  L +AI D+ RF E    +P V  LLEI+QKLEGLYRHASTHAAGIVIGDRPLS+LV
Sbjct: 504  NPTPLGKAIEDEPRFAEEVEKEPIVGTLLEIAQKLEGLYRHASTHAAGIVIGDRPLSELV 563

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+K++  + +RG+++DLS IP 
Sbjct: 564  PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLEKAVHLIRRRGIEIDLSKIPL 623

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  YN 
Sbjct: 624  DDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDRVEDIIALVALYRPGPMENIPTYNA 683

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+E++ SIHP ID ++KETQGVI+YQEQVMQIAQ L+GY+L EAD+LRRAMGKKI+ 
Sbjct: 684  RKHGEEEMASIHPKIDHLVKETQGVIVYQEQVMQIAQELAGYTLGEADLLRRAMGKKIRA 743

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMDKQ+ RF+ GA + G++K  A  IF+LLAKFADYGFNKSHAAAYAV+SYQTA++K HY
Sbjct: 744  EMDKQRVRFVEGAVERGVTKQQADFIFDLLAKFADYGFNKSHAAAYAVVSYQTAYLKAHY 803

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMT +M N +K+  F +DA +  I+++PPSV T   DF+VG+NRI+YSLAAIK
Sbjct: 804  PVEFLAASMTYDMANTDKLNDFRRDAIRLGIEVVPPSVLTSYRDFEVGENRIFYSLAAIK 863

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            G G     HI+    +KPF+S+EDFC+RVD K + +RVLESL+ AGA DCFG  R  L  
Sbjct: 864  GAGDAAVEHIVAKRKEKPFESIEDFCARVDPKIVGKRVLESLICAGAFDCFGLDRAALFA 923

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             +D +   A    ++      +IF         K+ L   +   ++ +   E +V+G Y 
Sbjct: 924  GVDRLMGMASRAAEDAAIGQADIFG-SAAIEPQKLQLPATAPWLAAEKLHREFQVVGCYL 982

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATI-RGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            S HPLD Y P L K+ ++ + +  A + RG    RLA  V +KQ++KTR G+++G V FS
Sbjct: 983  SAHPLDDYLPTLEKLRVQSWADFQAAVKRGATAGRLAGTVTAKQERKTRTGNKMGIVQFS 1042

Query: 1022 EPAKEYEANFF 1032
            +   +YEA  F
Sbjct: 1043 DATGQYEAVLF 1053


>gi|90419565|ref|ZP_01227475.1| DNA polymerase III alpha subunit [Aurantimonas manganoxydans
            SI85-9A1]
 gi|90336502|gb|EAS50243.1| DNA polymerase III alpha subunit [Aurantimonas manganoxydans
            SI85-9A1]
          Length = 1153

 Score = 1184 bits (3063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/1033 (56%), Positives = 750/1033 (72%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            +  P FVHL+VHS++SLLEGAL L+ I+     D  PAI I DTNNLF ALEFS+KA  A
Sbjct: 4    DTKPKFVHLRVHSAFSLLEGALKLDQIIKFAKGDDAPAIGICDTNNLFGALEFSEKASKA 63

Query: 66   GIQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            GIQPI GCQ+D++  D       + +    ++  +VL+ +T  GY  L+E+VS  YL   
Sbjct: 64   GIQPITGCQIDVEFSDCEESRGGRRERSLSSIAPLVLIAATEAGYANLVEIVSLAYLGHA 123

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  +   WL E  +EG+I LTGG  GPI  A   + S +A  R+     +FGDRLYV
Sbjct: 124  DNPRPHVLFEWL-ETRSEGIIALTGGPLGPIGSAIAADRSDLARSRMERMAPVFGDRLYV 182

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQRH G  R  E+  +QLAY   LPLVATN   FL  +D+EAHD L+AVA + +VSQ+D
Sbjct: 183  ELQRHEGRSRKVEADTLQLAYDMALPLVATNEPFFLKADDFEAHDALIAVAGNRLVSQED 242

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R++ DH LK+++EM  +F+DLPEAL NTVEIA+RCS+  +  APILPRF   + D  +
Sbjct: 243  RRRLSRDHSLKSQNEMSVLFADLPEALHNTVEIAQRCSYRPRTRAPILPRFAGADADAAE 302

Query: 305  KEEENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             E      LR +A+ GLE RLA   +A G  A+ YR+RL+FEL++I RMKF GYFLIVAD
Sbjct: 303  AEAAEVAELRRQAIEGLEARLAAHGLAPGETAESYRERLEFELSIIERMKFPGYFLIVAD 362

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK   IPVGPGRGSGAGS+ AYALT+TD+DPLRFSLLFERFLNP+R+SMPDFDIDF
Sbjct: 363  FIKWAKAQGIPVGPGRGSGAGSLVAYALTVTDLDPLRFSLLFERFLNPERVSMPDFDIDF 422

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG E+V QIITFG+LQA+A LRDVGR L+M Y QVD+LCKL+P +
Sbjct: 423  CQDRREEVIRYVQEKYGREQVGQIITFGTLQARAVLRDVGRVLEMSYGQVDKLCKLVPQN 482

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PV+L QA+ ++ R +EAR  +  VDRL+ I+ KLEGLYRHASTHAAGIVIGDRPLSQ
Sbjct: 483  PANPVTLAQALVEEPRLQEAREKEEIVDRLISIALKLEGLYRHASTHAAGIVIGDRPLSQ 542

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+LQK+++ +A+ G  +DLS I
Sbjct: 543  LVPMYRDPRSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLQKAVELIARTGPTIDLSAI 602

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY ++T   T+G+FQ+ES GMR+AL GM+PD  EDIIALV+LYRPGP++NI  Y
Sbjct: 603  PLDDARTYEMMTRGETVGVFQVESVGMRKALIGMRPDRFEDIIALVALYRPGPMENIPTY 662

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RK+G+E+   IH  I P+LKETQGVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 663  NARKHGEEEPDFIHDKIAPILKETQGVIIYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 722

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            + EMDKQ+ RF+ GA  NG+ KT +  IF+LLAKFADYGFNKSHAAAYA+++YQTA++K 
Sbjct: 723  RAEMDKQRVRFVEGAVANGLDKTQSNMIFDLLAKFADYGFNKSHAAAYALVAYQTAYLKA 782

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            ++PVEFLAASMTL+  N EK+  F  DA +  I+I+PPSV T    F+VG+N+I+Y+LAA
Sbjct: 783  NHPVEFLAASMTLDAGNTEKLNDFRMDAMRLGIKIVPPSVQTSFRQFEVGENKIFYALAA 842

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI+    D  F SLEDFC+R+D K +N+R LE L+ AGALDCFG+ R  L
Sbjct: 843  IKGVGEQAVDHIVATRGDGSFQSLEDFCARIDPKIVNKRTLEFLIAAGALDCFGHERALL 902

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
              ++D +  YA  V + R +   ++F    G+  + + L    +  SS +   E + +GF
Sbjct: 903  CANIDLMASYALRVHEGRASGQHDMFGG-AGSEPEPLHLNPAQLWTSSEKLLREFQAIGF 961

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESV-ATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD YK  L+++ ++ + E + A  RG    +LA  V S+Q++KTR G ++G + 
Sbjct: 962  YLSAHPLDEYKTTLKRLRVQTHAEVIHAVKRGATAGKLAGTVTSRQERKTRSGGKLGIIQ 1021

Query: 1020 FSEPAKEYEANFF 1032
             S+P+ +YE   F
Sbjct: 1022 LSDPSGQYEVVLF 1034


>gi|114707392|ref|ZP_01440289.1| DNA polymerase III subunit alpha [Fulvimarina pelagi HTCC2506]
 gi|114537273|gb|EAU40400.1| DNA polymerase III subunit alpha [Fulvimarina pelagi HTCC2506]
          Length = 1151

 Score = 1181 bits (3055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/1032 (56%), Positives = 753/1032 (72%), Gaps = 17/1032 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF+HL+ HS++SLLEGAL L+ I+    AD  PA+ I DTNNLF ALEFS+KA  +G+QP
Sbjct: 9    SFIHLRSHSAFSLLEGALKLDQIIKFALADGAPAVGIADTNNLFGALEFSEKAAKSGLQP 68

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGCQLD+D +D     ++ K      P +VL+ S+  GY  L+E+VS+ YL  +     
Sbjct: 69   IIGCQLDVDFEDG--ENDREKAALSPAP-VVLIASSDIGYANLVEIVSKAYLGHEANVRP 125

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +  SWL ++  EG+I LTGG SGPI  A       +AE RL   K  +GDRLYV LQR 
Sbjct: 126  HVKASWLDDL-AEGVIALTGGPSGPIGLAIAAERRPIAEARLDRLKTAYGDRLYVELQRQ 184

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             GY R  E+  ++LAY   LP+VATN   F   EDY+AHD L+AVA + +VS +DR R++
Sbjct: 185  HGYSRRLEAGTLELAYGCNLPIVATNEPYFYCAEDYDAHDALLAVASNRLVSHEDRRRLS 244

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE--E 307
             DH LKN++EM  +F+DLPEALENT+EIARRC+F  +V  PILPRF   + D    E  E
Sbjct: 245  RDHCLKNQNEMAELFADLPEALENTIEIARRCNFRPKVRQPILPRFAGADADPADAERAE 304

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              ELR +A  GL+ R+ +  IA G+  ++YR+RLDFEL +I RM+F GYFLIVADFI+WA
Sbjct: 305  VAELRRQAFEGLDRRMEKLGIADGHTVEEYRERLDFELTIIERMQFPGYFLIVADFIKWA 364

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQDRR
Sbjct: 365  KDHGIPVGPGRGSGAGSLVAYALTITDLDPLRFSLLFERFLNPERVSMPDFDIDFCQDRR 424

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVIRYVQ KYG E+V QIITFG+LQA+A LRDVGR L+M Y  VD+LCKL+P +PA+PV
Sbjct: 425  EEVIRYVQEKYGREQVGQIITFGTLQARAVLRDVGRVLEMSYGHVDKLCKLVPANPANPV 484

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L QA+ ++ R +EAR  +  VDRL+ IS KLEGLYRHASTHAAGIVIGDRPL +LVPMY
Sbjct: 485  TLAQALEEEPRLKEAREKEEIVDRLISISLKLEGLYRHASTHAAGIVIGDRPLQKLVPMY 544

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
            RD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT LQ ++ ++   +  K+DLS IP DD
Sbjct: 545  RDPRSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLQTAVSYVELNKQTKIDLSAIPLDD 604

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              TY +LT   T+G+FQLES GMR+AL GM+PD  EDIIALV+LYRPGP++NI  YN RK
Sbjct: 605  KPTYDMLTRGETVGVFQLESVGMRKALIGMRPDVFEDIIALVALYRPGPMENIPTYNARK 664

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+E+   IH  I P+LKETQGVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI+ EM
Sbjct: 665  HGEEEPDFIHEKIAPILKETQGVIIYQEQVMQIAQVLSGYSLGEADMLRRAMGKKIRAEM 724

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            DKQ+ RF+ GA + GI K  A  IF+LLAKFA+YGFNKSHAAAYA+++YQTA++K +YP 
Sbjct: 725  DKQRVRFVDGAVERGIQKKQADMIFDLLAKFANYGFNKSHAAAYALVAYQTAYLKANYPA 784

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EFLAASMTL+  N EK+ +F  DAR+  I+++PPSV T    F+V  N+I+Y+LAAIKGV
Sbjct: 785  EFLAASMTLDAGNTEKLNEFRLDARRLGIEVVPPSVQTSFRKFEVSGNKIFYALAAIKGV 844

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G     HI+E   DKPF SLEDFC RVD K +N+R  E L+ AGA DCFG+ R  L+ ++
Sbjct: 845  GEHAVDHIVEKRGDKPFKSLEDFCGRVDPKIINKRTFEFLIAAGAFDCFGHERAVLMSNV 904

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFS---DKITLEKFSVENSSVRFENEQRVLGFY 962
            + +  YA  + ++RT+   +IF    G FS   + + L    +  +S +   E + +GF+
Sbjct: 905  ERMMGYAARIAESRTSGQADIF----GAFSSEPEPLRLGPAPLWTASEKLLREFQAIGFH 960

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             S HPLD Y+  L+++ ++ + ++VA ++   + +RLA  V S+Q++KTR G +IG +  
Sbjct: 961  LSAHPLDEYRSTLKRLRVQSHADAVAAVKRGASAVRLAGTVTSRQERKTRSGGKIGIIQM 1020

Query: 1021 SEPAKEYEANFF 1032
            S+ + +YE   F
Sbjct: 1021 SDASAQYEVVLF 1032


>gi|319408651|emb|CBI82306.1| DNA polymerase III alpha subunit [Bartonella schoenbuchensis R1]
          Length = 1162

 Score = 1181 bits (3055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/1030 (57%), Positives = 753/1030 (73%), Gaps = 8/1030 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS+YSLLEGAL +  I+    +D  PAIAITDTNNLF ALEFSQ     G+Q
Sbjct: 16   PRFIHLRVHSAYSLLEGALKIRQIIQHAISDHAPAIAITDTNNLFGALEFSQYCFTDGVQ 75

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQL ID +         K   P+   SIVL  ++  GY  LI LVSR YL  +   
Sbjct: 76   PIIGCQLAIDFEHENCDPRLIKPRNPSDFASIVLFAASEAGYAHLISLVSRAYLDKRDTD 135

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL     EG+I LTGG +GPI+ A   N  + A + L   K++FGDRLYV LQ
Sbjct: 136  PPHIKADWLLS-QNEGIIALTGGWNGPINLALVENKKERAVEHLTYLKQIFGDRLYVELQ 194

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  YDR  E+ +V+LAY HE+PLVATN + FL++E YEAHD LMAVA   +VS  +R R
Sbjct: 195  RHSSYDRKVEAALVELAYEHEIPLVATNEAFFLNKEGYEAHDALMAVAEGQIVSNPNRRR 254

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQK 305
            VTPDHYLK++ EMVS+FSDLPEALEN+VEIA RC   +    PILPRF E+  D     +
Sbjct: 255  VTPDHYLKSQDEMVSLFSDLPEALENSVEIALRCHTFVPTRKPILPRFTERSVDPDSALE 314

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +E  EL N+A  GL++RL    +A+GY  +DY QRLD+E++VI RM+F GYFLIV+DFI+
Sbjct: 315  DEAKELLNQAKVGLKMRLETIGLAEGYTVEDYEQRLDYEISVITRMQFPGYFLIVSDFIK 374

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQD
Sbjct: 375  WAKGHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRISMPDFDIDFCQD 434

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QVD L KL+P+ P  
Sbjct: 435  RREEVIQYVQEKYGRDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVPSMPGS 494

Query: 486  PVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             + L  AI D+ +F+E +  +P + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVP
Sbjct: 495  NIELAVAIRDEPKFKEEKKKNPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVP 554

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMK +E+AGL+KFDFLGLKTLT+L+ + DF+A++GVKVDLS I  +
Sbjct: 555  MYRDPRSDMPVTQFNMKCVEQAGLVKFDFLGLKTLTVLKMATDFVARKGVKVDLSHISLN 614

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY +L    T+G+FQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++NI  YN R
Sbjct: 615  DETTYTMLARGETVGVFQVESSGMRKALIGMKPDRIEDIIALVALYRPGPMENIPTYNAR 674

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GKE+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI +E
Sbjct: 675  KHGKEEITSIHPKIDHLVKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIHKE 734

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+ RF+ GA   GI K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK H+P
Sbjct: 735  MQKQRTRFVRGAVDGGIDKDQADIIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKAHHP 794

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMT +M N +K+  F ++A +  I+++ P V T C  F++G+  IYYSLAAIKG
Sbjct: 795  VEFLAASMTCDMTNTDKLNDFRREALRLGIEVIAPCVQTSCRVFEIGEKCIYYSLAAIKG 854

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G     HI+    DKPF  LEDFC R+D + +N+R +ESL++AGALDCF  +R  LL S
Sbjct: 855  IGDLVVDHIVACRGDKPFKDLEDFCERIDPRIVNKRAMESLIYAGALDCFQVAREVLLAS 914

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L  +   A  +  N ++   +IF    G   + + L + S  + + +  +E +V+GFYFS
Sbjct: 915  LGTLNARAIRIIDNNSSGQTDIFGMMGGP-KEPLILSQASPWSLAEKLHHEFQVIGFYFS 973

Query: 965  GHPLDVYKPILRKMGIKGYEE-SVATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPLD Y+ IL K  ++ + + S A  +G    RLA  +V+KQ +KT+ G ++G + FS+
Sbjct: 974  AHPLDEYQTILTKKRVQIWSDFSDAVKKGATAARLAGTIVAKQIRKTKSGKKMGVIQFSD 1033

Query: 1023 PAKEYEANFF 1032
             +  YEA  F
Sbjct: 1034 TSGHYEAVIF 1043


>gi|240850744|ref|YP_002972144.1| DNA polymerase III subunit alpha [Bartonella grahamii as4aup]
 gi|240267867|gb|ACS51455.1| DNA polymerase III subunit alpha [Bartonella grahamii as4aup]
          Length = 1164

 Score = 1171 bits (3029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/1030 (57%), Positives = 754/1030 (73%), Gaps = 8/1030 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS+YSLLEGAL +  I+ +  +D  PA+AITDTNNLF ALEFSQ   A G+Q
Sbjct: 18   PRFIHLRVHSAYSLLEGALKIPQIIQQAISDHAPAVAITDTNNLFGALEFSQHCLAHGVQ 77

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQL +D  D    +   K   P+   SIVLL ++  GY  L+ LVSR YL  +   
Sbjct: 78   PIIGCQLTVDFCDENDHSRLAKWRNPSDFCSIVLLAASEIGYAHLVRLVSRAYLDKRDTD 137

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I  +WL    +EG+I+LTGG  GPI+ +      + A +RL+  KK F DRLYV LQ
Sbjct: 138  PPHIKANWLSA-HSEGIIVLTGGKGGPINLSLAEEKKEHAVERLIYLKKSFADRLYVELQ 196

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  YDR  E+ +++LAY HE+PLVATN + FL  E YEAHD LMAV+   +VS  DR R
Sbjct: 197  RHGSYDRRVEADLIELAYAHEIPLVATNEAFFLKREGYEAHDALMAVSEGQIVSNPDRKR 256

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC--DDIQK 305
            VTPDHYLK++ EMV++FSDLPEALEN+VEIA RC     +  PILPRFIE+    ++  +
Sbjct: 257  VTPDHYLKSQDEMVTLFSDLPEALENSVEIALRCHIATPLRKPILPRFIEQSANSENTLE 316

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E++EL N+A AGL++RL    +A+GY   DY QRLD+E++VI RM+FSGYFLIV+DFI+
Sbjct: 317  VEDSELLNQAKAGLKMRLETIGLAEGYTIADYEQRLDYEISVITRMQFSGYFLIVSDFIK 376

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+
Sbjct: 377  WAKVHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDFCQE 436

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YVQ KYG  +VAQIITFG LQA+A LRDVGR L++PY QVD L KLIP  P  
Sbjct: 437  RREEVIQYVQKKYGRNQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLIPATPGS 496

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             V L  AI D+ +F E +  DP V R L+I+ +LEGLYRHASTHAAGIVIGDRPL +LVP
Sbjct: 497  QVELADAIKDEPKFEEEKKKDPVVGRALDIALQLEGLYRHASTHAAGIVIGDRPLWELVP 556

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++G+K+DLS IP +
Sbjct: 557  MYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARKGIKIDLSNIPLN 616

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY ++    T+G+FQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++NI  YN R
Sbjct: 617  DETTYAMMARGETVGVFQVESSGMRKALIGMKPDRIEDIIALVALYRPGPMENIPTYNAR 676

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKKI  E
Sbjct: 677  KHGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKIHAE 736

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+ RF++GA   G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK +YP
Sbjct: 737  MQKQRTRFVNGAVAGGVDKDQADIIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKANYP 796

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMT +M N +K+  F ++A +  I+++ PS+ T    F+VGDN IYYSLAAIKG
Sbjct: 797  VEFLAASMTYDMTNTDKLNDFRREALRLGIEVIAPSIQTSHRVFEVGDNCIYYSLAAIKG 856

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG T   HI+    DK F  LEDFC+RVD + +N+R +ESLV AGA DCF  +R  LL +
Sbjct: 857  VGETVVDHIVACRGDKIFKDLEDFCARVDPRIVNKRAMESLVCAGAFDCFNIAREVLLAN 916

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L  +   A  +  + ++   +IF    G   + + L + +    + +   E + +GFYFS
Sbjct: 917  LGTLHARALRILDDNSSGQVDIFGM-AGGLKEPLILSQTTSWLPAEKLYREFQAIGFYFS 975

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPL+ Y+ IL K  I+ +      ++G     RLA  VV+K  +KT+ G ++G + FS+
Sbjct: 976  AHPLEEYQAILDKKRIQTWVNFANAVKGGATAARLAGTVVAKNVRKTKSGKKMGIIHFSD 1035

Query: 1023 PAKEYEANFF 1032
             + +YEA  F
Sbjct: 1036 TSGQYEAVLF 1045


>gi|163868512|ref|YP_001609721.1| DNA polymerase III subunit alpha [Bartonella tribocorum CIP 105476]
 gi|161018168|emb|CAK01726.1| DNA polymerase III alpha subunit [Bartonella tribocorum CIP 105476]
          Length = 1155

 Score = 1169 bits (3024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/1038 (56%), Positives = 757/1038 (72%), Gaps = 8/1038 (0%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            + +Y    P F+HL+VHS+YSLLEGAL +  I+ +  +DQ PAIAITDTNNLF ALEFSQ
Sbjct: 1    MQEYKNSLPRFIHLRVHSAYSLLEGALKIPQIIQQAISDQAPAIAITDTNNLFGALEFSQ 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLIELVSRM 119
               + G+QPIIGCQL ID  D    +   K    +   SI+L  ++  GY  L+ LVSR 
Sbjct: 61   YCLSHGVQPIIGCQLAIDFCDENDHSRLVKGRHASDFCSIILFAASETGYAHLVRLVSRA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            YL         I   WL E  +EG+I LTGG  GPI+ A      + A +RL+  KK+F 
Sbjct: 121  YLDKCDTDPPHIKADWLSE-HSEGIIALTGGKGGPINLALSEEKKERAVERLIYLKKIFS 179

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            DRLYV LQRH  YDR  E+++++LAY HE+PLVATN + FL  E YEAHD LMAV+   +
Sbjct: 180  DRLYVELQRHGSYDRGVEAELIELAYAHEIPLVATNEAFFLKREGYEAHDALMAVSEGQI 239

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            VS  DR RVTPDHYLK++ EMV++FSDLPEALEN+VEIA RC     +  PILPRFIE+ 
Sbjct: 240  VSNPDRKRVTPDHYLKSQDEMVALFSDLPEALENSVEIALRCHIATPLRKPILPRFIEQS 299

Query: 300  C--DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               ++  + E++EL N+A AGL++RL    +A+GY   DY QRLD+E++VI RM+FSGYF
Sbjct: 300  AHSENTLEAEDSELLNQAKAGLKMRLETIGLAEGYTIADYEQRLDYEVSVITRMQFSGYF 359

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV+DFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPD
Sbjct: 360  LIVSDFIKWAKIHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPD 419

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ+RR+EVI+YVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QVD L K
Sbjct: 420  FDIDFCQERREEVIQYVQKKYGRDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTK 479

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   V L  AI D+ +F E +  DP V R L+I+ +LEGLYRHASTHAAGIVIGD
Sbjct: 480  LIPATPGSQVELADAIKDEPKFEEEKKKDPVVGRALDIALQLEGLYRHASTHAAGIVIGD 539

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL +LVPMYRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++G K+
Sbjct: 540  RPLWELVPMYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARQGDKI 599

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DLS IP +D  TY ++    T+G+FQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++
Sbjct: 600  DLSNIPLNDEVTYAMMARGETVGVFQVESSGMRKALIGMKPDRIEDIIALVALYRPGPME 659

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            NI  YN RK+G+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRA
Sbjct: 660  NIPTYNARKHGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRA 719

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKKI  EM KQ+ RF++GA   G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQT
Sbjct: 720  MGKKIHAEMQKQRTRFVNGAVAGGVDKEQADIIFDLLAKFADYGFNKSHAAAYAIVSYQT 779

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A+MK +YPVEFLAASMT +M N +K+  F ++A +  I+++ PS+ T    F+VGD+ IY
Sbjct: 780  AYMKANYPVEFLAASMTHDMTNTDKLNDFRREALRLGIEVIAPSIQTSHRVFEVGDHCIY 839

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            YSLAAIKGVG T   HI+    +K F  LEDFC+RVD + +N+R +ESLV AGA DCF  
Sbjct: 840  YSLAAIKGVGETVVDHIVACRGNKIFKDLEDFCARVDLRIVNKRAMESLVCAGAFDCFNI 899

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LL +L  I   A  +  N ++   +IF  E G   + + L + +    + +   E 
Sbjct: 900  AREILLANLGTIHARALRILDNNSSGQFDIFGME-GGLKEPLILSQTTPWLPAEKLYREF 958

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSR 1014
            + +GFYFS HPLD Y+ IL K  ++ +      ++G     RLA  VV+K  +KT+ G +
Sbjct: 959  QAIGFYFSAHPLDEYQTILAKKRVQTWSHFANAVKGGATAARLAGTVVAKNVRKTKSGKK 1018

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            +G + FS+ + +YEA  F
Sbjct: 1019 MGIIHFSDTSGQYEAILF 1036


>gi|319898845|ref|YP_004158938.1| DNA polymerase III alpha subunit [Bartonella clarridgeiae 73]
 gi|319402809|emb|CBI76360.1| DNA polymerase III alpha subunit [Bartonella clarridgeiae 73]
          Length = 1162

 Score = 1166 bits (3016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 587/1030 (56%), Positives = 760/1030 (73%), Gaps = 8/1030 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS+YSLLEGAL +  I+    +D  PAIAITDTNNLF ALEFSQ   A GIQ
Sbjct: 16   PRFIHLRVHSAYSLLEGALKIKQIIQHAISDHMPAIAITDTNNLFGALEFSQYCFADGIQ 75

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQL ID  D    ++  K   P+   SIVL  ++  GY  L+ LVSR YL D+   
Sbjct: 76   PIIGCQLAIDFDDENCNSSLAKLRHPSDYSSIVLFAASETGYAHLVRLVSRAYL-DKNDN 134

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             +    + L     EG+I LTGG SGPI+ A   +  + A +RL   KK+FGDRLYV LQ
Sbjct: 135  DLPHIKADLLLTHHEGIIALTGGRSGPINLALAEDRKERAVERLTYLKKIFGDRLYVELQ 194

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  YDR  E+ +++LAYT+E+PLVATN + FL++E Y AHD LMAVA   VVS  DR R
Sbjct: 195  RHGSYDRKVEAVLIELAYTYEIPLVATNEAFFLNKEGYAAHDALMAVAEGQVVSDPDRKR 254

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQK 305
            VTPDHYLK++ EM+S+FSDLPEALEN+VEIA RC     +  PILPRFIE+  D   + +
Sbjct: 255  VTPDHYLKSQDEMISLFSDLPEALENSVEIALRCHAYAPIRKPILPRFIEQSADTSSVLE 314

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E  EL N+A AGL++RL    +A+GY   DY QRL++E+++I RM+FSGYFLIV+DFI+
Sbjct: 315  SEAKELLNQAEAGLKMRLETIGLAEGYTIADYEQRLNYEISIITRMQFSGYFLIVSDFIK 374

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+
Sbjct: 375  WAKAHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDFCQE 434

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVIRYVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QVD L KL+P  P  
Sbjct: 435  RREEVIRYVQKKYGCDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVPATPGS 494

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             V L QAI D+ +F E +  DP + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVP
Sbjct: 495  NVELAQAIIDEPKFEEEKKKDPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVP 554

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMK++E++GL+KFDFLGLKTLT+L+ ++DF+A++G KVDLS IP +
Sbjct: 555  MYRDPRSDMPVTQFNMKYVEQSGLVKFDFLGLKTLTVLKMAVDFVARKGTKVDLSHIPLN 614

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY +++   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN R
Sbjct: 615  DEVTYAMMSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNIR 674

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+ +E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKKI +E
Sbjct: 675  KHKEEEITSIHPKIDHLVKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKIHKE 734

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M +Q+ RF+SGA   GI K  A  IF+LLAKFADYGFNKSHA AYA++SY TA+MK H+P
Sbjct: 735  MQEQRTRFVSGAVDGGIDKDQANVIFDLLAKFADYGFNKSHATAYAIVSYHTAYMKAHHP 794

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMT +M N +K+  F ++A +  I+++ P V T    F+VG+N IYYSL+A+KG
Sbjct: 795  VEFLAASMTYDMTNTDKLNDFWREALRLGIEVIAPCVQTSHRIFEVGENCIYYSLSAVKG 854

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG     HI+    DKPF  LEDFC R+D + +N+R +ESL++AGA DCF  +R  LL S
Sbjct: 855  VGDVVVDHIVACRGDKPFKDLEDFCERIDPRIVNKRAMESLIYAGAFDCFNVAREVLLAS 914

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L  +   A  +  N ++   +IF    G   + + L + S  + + +   E + +GFYFS
Sbjct: 915  LVTLNARALRILDNNSSGQIDIFGM-IGGLKEPLILSQASPWSPAEKLHYEFQAIGFYFS 973

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPL  Y+ +L K  ++ ++   A+++G     RLA  +V+++ +KTR G ++G + FS+
Sbjct: 974  AHPLSEYQDVLIKKRVQTWKNFAASVKGGATAARLAGTIVARKIRKTRSGKKMGVIQFSD 1033

Query: 1023 PAKEYEANFF 1032
             + +YEA  F
Sbjct: 1034 TSGQYEAVIF 1043


>gi|319404155|emb|CBI77748.1| DNA polymerase III alpha subunit [Bartonella rochalimae ATCC
            BAA-1498]
          Length = 1162

 Score = 1159 bits (2997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/1032 (56%), Positives = 752/1032 (72%), Gaps = 12/1032 (1%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS+YSLLEGAL +  I+    +D+ PAIAITDTNNLF ALEFSQ   + GIQ
Sbjct: 16   PRFIHLRVHSAYSLLEGALKVKQIIQHAISDRMPAIAITDTNNLFGALEFSQYCFSDGIQ 75

Query: 69   PIIGCQLDIDMQD---NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PIIGCQL ID  D   N  +T    +      SIVL  ++  GY  L+ LVSR YL    
Sbjct: 76   PIIGCQLAIDFGDENCNSPLTKLHHSS--DYSSIVLFAASETGYSHLVRLVSRAYLDKND 133

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   +L     EG+I LTGG  GPI+ A   +  + A +RL   KK+FGDRLYV 
Sbjct: 134  TDLPHIKADFLLR-HHEGIIALTGGPGGPINSALTEDKKERAIERLTYLKKIFGDRLYVE 192

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            LQRH  YDR  E  +++LAYT+E+PLVATN + FL++E Y AHD LMAVA   VVS  +R
Sbjct: 193  LQRHGSYDRKVEEALIELAYTYEIPLVATNEAFFLNKEGYAAHDALMAVAEGQVVSNPNR 252

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DI 303
             RVT DHYLK++ EMVS+FSDLPEALEN+VEIA RC     +  PILP FIE+  D   +
Sbjct: 253  KRVTSDHYLKSQDEMVSLFSDLPEALENSVEIALRCHAYAPIRKPILPGFIERSADTSSV 312

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             + E  EL ++A AGL++RL    +A+GY   DY QRL++E++VI RM+FSGYFLIV+DF
Sbjct: 313  LEAEAKELLDQAKAGLKMRLETIGLAEGYTIADYEQRLNYEISVITRMQFSGYFLIVSDF 372

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFC
Sbjct: 373  IKWAKAHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDFC 432

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q+RR+EVIRYVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY  VD L KL+P  P
Sbjct: 433  QERREEVIRYVQQKYGCDQVAQIITFGKLQARAVLRDVGRVLEVPYRLVDYLTKLVPATP 492

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               + L QAI D+ +F E +  DP + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+L
Sbjct: 493  GSNIELAQAIIDEPKFEEEKKKDPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSEL 552

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VPMYRD RSD+PVTQFNMK++E++GL+KFDFLGLKTLT+L+ ++DF+A++G KVDLS IP
Sbjct: 553  VPMYRDPRSDMPVTQFNMKYVEQSGLVKFDFLGLKTLTVLKMAVDFVARKGTKVDLSHIP 612

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D  TY +++   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN
Sbjct: 613  LNDEATYAMMSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENISTYN 672

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+ +E+I SIHP ID ++KETQGVI+YQEQVMQIAQ L+GYSL EAD+LRRAMGKKI 
Sbjct: 673  IRKHKEEEITSIHPKIDHLVKETQGVIVYQEQVMQIAQELAGYSLGEADLLRRAMGKKIH 732

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            +EM +Q+ RF+SGA   G+ K  A  IF+LLAKFADYGFNKSHA AYA++SY TA+MK H
Sbjct: 733  KEMQEQRARFVSGAVDGGLDKEQANVIFDLLAKFADYGFNKSHATAYAIVSYHTAYMKAH 792

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            +PVEFLAASMT +M N +K+  F ++A +  I+++ P V T    F+VG+N IYYSL+A+
Sbjct: 793  HPVEFLAASMTYDMTNTDKLNDFRREALRLGIEVVAPCVQTSHRIFEVGENCIYYSLSAV 852

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KGVG     HI+    DKPF  LEDFC R+D + +N+R +ESL++AGA DCF  +R  LL
Sbjct: 853  KGVGDMVVDHIVACRGDKPFRDLEDFCERIDPRIVNKRAMESLIYAGAFDCFNVAREVLL 912

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             SL  +   A  +  N ++   +IF    G   + + L + S  + + +   E +V+GFY
Sbjct: 913  ASLVTLNARALRILDNNSSGQVDIF-EMVGGLKEPLILSQASPWSVAEKLHYEFQVIGFY 971

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FS HPL  Y+ +L K  ++ +    A+++G     RLA  VV+KQ +KT+ G ++G + F
Sbjct: 972  FSAHPLSEYQDVLIKKRVQTWNNFAASVKGGATAARLAGTVVAKQIRKTKSGKKMGVIQF 1031

Query: 1021 SEPAKEYEANFF 1032
            S+ + +YEA  F
Sbjct: 1032 SDTSGQYEAVIF 1043


>gi|49475735|ref|YP_033776.1| DNA polymerase III subunit alpha [Bartonella henselae str. Houston-1]
 gi|49238542|emb|CAF27778.1| DNA polymerase III alpha subunit [Bartonella henselae str. Houston-1]
          Length = 1162

 Score = 1156 bits (2991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/1030 (56%), Positives = 746/1030 (72%), Gaps = 8/1030 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS+YSLLEGAL +  I+    +D  PA+AITDTNNLF ALEFSQ   + GIQ
Sbjct: 16   PHFIHLRVHSAYSLLEGALKIPQIIQHAISDHTPAVAITDTNNLFGALEFSQYCFSYGIQ 75

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQL ID  D        K   P+   SIVLL ++  GY  L+ LVSR YL      
Sbjct: 76   PIIGCQLTIDFGDGNDNPRLVKWRHPSDFCSIVLLAASEIGYAHLVRLVSRAYLDKCDTD 135

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL     EG+I+LTGG  GPI+ +      + A +RL+  KK+F DRLYV LQ
Sbjct: 136  PPHIKADWLLS-HNEGIIVLTGGRGGPINFSLAEERKERAIERLIYLKKIFDDRLYVELQ 194

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  +D+  E+ +++LAY +E+PLVATN + FL+ E YEAHD LMAVA   +VS  DR R
Sbjct: 195  RHGSFDQKVEAALIELAYAYEIPLVATNEAFFLNREGYEAHDALMAVAEGQIVSNPDRKR 254

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQK 305
            VTPDHYLK++ EMV++FSDLPEALEN+VEIA RC        PILPRFIE+  D     +
Sbjct: 255  VTPDHYLKSQEEMVALFSDLPEALENSVEIALRCHTATPTRKPILPRFIEQSVDLNFTLE 314

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E+ EL N+A AGL++RL    +A+GY   DY QRLD+E++VI RM+FSGYFLIV+DFI+
Sbjct: 315  AEDRELLNQAKAGLKMRLKTIGLAEGYTITDYEQRLDYEISVITRMQFSGYFLIVSDFIK 374

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK ++IPVGPGRGSGAGS+ AYAL ITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+
Sbjct: 375  WAKVHDIPVGPGRGSGAGSLVAYALMITDVDPLRFSLLFERFLNPDRVSMPDFDIDFCQE 434

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI YVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QV+ L KL+P  P  
Sbjct: 435  RREEVIHYVQKKYGRDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVEYLTKLVPAAPGS 494

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             V L  AI D+ +F E +  DP++ R L+I+ +LEGLYRHASTHAAGIVIGDRPLS+L+P
Sbjct: 495  QVELADAIKDEPKFEEEKKKDPAIGRTLDIALQLEGLYRHASTHAAGIVIGDRPLSELIP 554

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++G+K++LS IP +
Sbjct: 555  MYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARKGIKINLSNIPLN 614

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY ++    T+GIFQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++NI +YN R
Sbjct: 615  DETTYAMMARGETVGIFQVESSGMRKALIGMKPDRIEDIIALVALYRPGPMENIPIYNAR 674

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKKI  E
Sbjct: 675  KHGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKIHTE 734

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+ RF++GA   G+ K  A  IF+LLAKFADYGFNKSHAAAYA+ISYQTA+MK H+P
Sbjct: 735  MQKQRTRFVNGAVAGGVDKDQADIIFDLLAKFADYGFNKSHAAAYAIISYQTAYMKAHHP 794

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMT +M N EK+  F ++A +  I+++ P V T    F+VGDN IYYSLAAIKG
Sbjct: 795  VEFLAASMTYDMMNTEKLNDFRREALRLGIKVIAPCVQTSHRVFEVGDNCIYYSLAAIKG 854

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG     HI+    +K F  LEDFC R+D + +N+R +ESLV AGA DCF  +R  LL S
Sbjct: 855  VGEAVVDHIVACRGNKVFKDLEDFCERIDPRIVNKRAMESLVCAGAFDCFNIAREVLLAS 914

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L  +   A  +  + ++   +IF        + + L + S  +   +   E + +GFYFS
Sbjct: 915  LGTLHARALRILDDNSSGQTDIFGI-TSVLKEPLILSQASPWSLDEKLHREFQAIGFYFS 973

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPLD Y+ IL K  I+ +      ++      RLA  VV+KQ +KT+ G ++G V FS+
Sbjct: 974  AHPLDEYQAILVKKRIQNWVNFANAVKAGATAARLAGTVVAKQVRKTKSGKKMGIVHFSD 1033

Query: 1023 PAKEYEANFF 1032
             + +YEA  F
Sbjct: 1034 TSGQYEAVLF 1043


>gi|319405608|emb|CBI79231.1| DNA polymerase III alpha subunit [Bartonella sp. AR 15-3]
          Length = 1140

 Score = 1155 bits (2988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/1023 (56%), Positives = 749/1023 (73%), Gaps = 8/1023 (0%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75
            +HS+YSLLEGAL +  I     +D  PAIAITDTNNLF ALEFSQ     GIQPIIGCQL
Sbjct: 1    MHSAYSLLEGALKIKQITQHAISDNMPAIAITDTNNLFGALEFSQSCFIDGIQPIIGCQL 60

Query: 76   DIDMQDNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             ID  D    ++  K    +   SI+L  ++  GY  L++LVSR YL         I   
Sbjct: 61   AIDFGDENCNSSLAKLRHSSDFSSIILFAASEIGYANLVQLVSRAYLDKSDVDCPHIKAD 120

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR 194
            WL     +G+I LTGG SGPI+ A   +  + A KRL   KK+F DRLYV LQR+  YD+
Sbjct: 121  WLL-THHKGIIALTGGPSGPINLALAEDRKERAVKRLTYLKKIFSDRLYVELQRYSSYDQ 179

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
              E+ +V+LAYT+ELPLVATN + FL++E YEAHD LMAVA   VVS  DR RVTP+HYL
Sbjct: 180  KVEAALVELAYTYELPLVATNEAFFLNKEGYEAHDALMAVAEGQVVSNPDRKRVTPEHYL 239

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQKEEENELR 312
            K++ EMVS+FSDLPEALEN+VEIA RC     +  PILPRFIE   D   + + E  EL 
Sbjct: 240  KSQDEMVSLFSDLPEALENSVEIALRCHAYAPIRKPILPRFIESSADLSSVLEAEAKELL 299

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            ++A +GL++RL    +A+GY   DY QRL++E+++I RM+FSGYFLIV+DFI+WAK ++I
Sbjct: 300  DQAESGLKMRLETIGLAEGYTIADYEQRLNYEISIITRMQFSGYFLIVSDFIKWAKAHDI 359

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
            PVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+RR+EVIR
Sbjct: 360  PVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRISMPDFDIDFCQERREEVIR 419

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QA 491
            YVQ KYG  +VAQIITFG LQA+A LRDVGR L++PY QVD L KL+P  P   V L +A
Sbjct: 420  YVQEKYGCNQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVPATPGSNVELAKA 479

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
            I D+ +F E +  DP + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVPMYRD RS
Sbjct: 480  IIDEPKFEEEKKKDPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVPMYRDPRS 539

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            D+PVTQFNMK++E++GL+KFDFLGLKTLT+L+ ++DF+A++G+K++LS IP +D  TY +
Sbjct: 540  DMPVTQFNMKYVEQSGLVKFDFLGLKTLTVLKMAVDFVARKGIKINLSCIPLNDEVTYAM 599

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            ++   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN RK+ +E+I
Sbjct: 600  MSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIATYNIRKHKEEEI 659

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
             SIHP ID ++KETQGVI+YQEQVMQIAQ L+GYSL EAD+LRRAMGKKI +EM +Q+ R
Sbjct: 660  TSIHPKIDHLVKETQGVIVYQEQVMQIAQELAGYSLGEADLLRRAMGKKIHKEMQEQRTR 719

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            F+SGA   GI K  A  IF+LLAKFADYGFNKSHA AYA++SYQTA+MK H+PVEFLAAS
Sbjct: 720  FVSGAVDGGIDKDQANVIFDLLAKFADYGFNKSHATAYAIVSYQTAYMKAHHPVEFLAAS 779

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            MT +M N +K+  F ++A +  I+++ P V T    F+VG+N IYYSL+A+KGVG     
Sbjct: 780  MTYDMTNTDKLNDFRREALRLGIEVIAPCVQTSHRIFEVGENCIYYSLSAVKGVGDMVVD 839

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            HI+    DKPF  LEDFC R+D + +N+R +ESL++AGA DCF  +R  LL SL  +   
Sbjct: 840  HIVARRGDKPFRDLEDFCERIDPRIVNKRAMESLIYAGAFDCFNIAREVLLASLATLNAR 899

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            A  +  N ++   +IF    G   + + L + S  +S+ +  +E + +GFYFS HPL  Y
Sbjct: 900  ALRILDNNSSGQIDIFGM-IGGLKEPLILSQVSPWSSAEKLYHEFQTIGFYFSAHPLSEY 958

Query: 972  KPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            + +L K  ++ + +   +I+G     RLA  VV+KQ +K R G ++G + FS+ + +YEA
Sbjct: 959  QDVLIKKRVQTWSDFATSIKGGATAARLAGTVVAKQIRKIRSGKKMGIIQFSDTSGQYEA 1018

Query: 1030 NFF 1032
              F
Sbjct: 1019 VIF 1021


>gi|49474348|ref|YP_032390.1| DNA polymerase III subunit alpha [Bartonella quintana str. Toulouse]
 gi|49239852|emb|CAF26246.1| DNA polymerase III alpha subunit [Bartonella quintana str. Toulouse]
          Length = 1162

 Score = 1152 bits (2980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/1032 (56%), Positives = 751/1032 (72%), Gaps = 12/1032 (1%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS+YSLLEGAL +  I+    +D  PA+AITDTNNLF ALEFSQ   + GIQ
Sbjct: 16   PRFIHLRVHSAYSLLEGALKIPQIIQHAISDAMPAVAITDTNNLFGALEFSQHCFSHGIQ 75

Query: 69   PIIGCQLDIDM---QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PIIGCQL ID     DN +   + + PF    SIVLL ++  GY  L+ LVSR YL    
Sbjct: 76   PIIGCQLTIDFGDGNDNPRFV-KWRHPFDFC-SIVLLAASKIGYAHLVRLVSRAYLDKCD 133

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   WL    +EG+I LTGG  GPI+     +    A +RL+  KK+F DRLYV 
Sbjct: 134  TDPPHIKADWLLS-QSEGIIALTGGRGGPINFCLAEDKKARAVERLIYLKKVFNDRLYVE 192

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            LQRH  +DR  E+ +++LAY H +PLVATN + FL+ + YEAHD LMAVA   +VS  DR
Sbjct: 193  LQRHGSFDRKVETALIELAYAHGIPLVATNEAFFLNRKGYEAHDALMAVAEGQIVSNPDR 252

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD--I 303
             RVTPDHYLK + EMV++FSDLPEALEN+VEIA RC     +  PILPRFIE+  D    
Sbjct: 253  KRVTPDHYLKPQDEMVALFSDLPEALENSVEIALRCHTATPIRKPILPRFIEQSVDSNFT 312

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +EE++EL N+A  GL+ RL    +A+GY   DY++RLD+E++VI RM+FSGYFLIV+DF
Sbjct: 313  LEEEDSELLNQAKDGLKRRLETIGLAEGYTIADYQKRLDYEISVITRMQFSGYFLIVSDF 372

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFC
Sbjct: 373  IKWAKVHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRISMPDFDIDFC 432

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q+RR+EVI YVQ +YG ++VAQIITFG LQA+A LRDVGR L++PY QVD L KL+P  P
Sbjct: 433  QERREEVIHYVQKRYGRDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVPAAP 492

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
             + V L  AI D+ +F E +  DP++ R L+I+ +LEGLYRHASTHAAGIVIGDRPLS+L
Sbjct: 493  GNQVELADAIKDEPKFEEEKKKDPAIGRTLDIALQLEGLYRHASTHAAGIVIGDRPLSEL 552

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD RS++PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++G+K+DLS IP
Sbjct: 553  VPLYRDPRSNMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARKGIKIDLSHIP 612

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D  TY ++    T+G+FQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++NI +YN
Sbjct: 613  LNDEATYAMMARGETVGVFQVESSGMRKALIGMRPDRIEDIIALVALYRPGPMENIPIYN 672

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKKI 
Sbjct: 673  ARKHGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKIH 732

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EEM KQ+ RF++GA   G+ K  A  IF+LLAKFADYGFNKSHAAAYA+ISYQTA+MK H
Sbjct: 733  EEMQKQRTRFVNGAVAGGVDKEQANIIFDLLAKFADYGFNKSHAAAYAIISYQTAYMKAH 792

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            + VEFLAASM+ +M N EK+  F ++A +  I+++ P V T    F+VG N IYYSLAAI
Sbjct: 793  HSVEFLAASMSYDMTNTEKLNDFRREALRLGIEVIAPCVQTSHRLFEVGKNCIYYSLAAI 852

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KGVG     HI+    +K F  L+DFC R+D + +N+R +ESLV AGA DCF  +R  LL
Sbjct: 853  KGVGEAVVDHIVACRGNKVFKDLKDFCERIDPRIVNKRAMESLVCAGAFDCFNIAREVLL 912

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             SL  +   A  +  N  +   ++F    G   + + L + S  + + +   E +V+GFY
Sbjct: 913  ASLGTLHARALRIFDNNFSGQVDMFG-IAGGLKEPLILSQASPWSPAEKLYREFQVIGFY 971

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FS HPLD Y+ IL K  I+ +      ++G     RLA  VV+KQ +KT+ G ++G + F
Sbjct: 972  FSAHPLDEYQAILAKKRIQTWVNFANAVKGGATVARLAGTVVAKQVRKTKSGKKMGIIHF 1031

Query: 1021 SEPAKEYEANFF 1032
            S+ + +YE   F
Sbjct: 1032 SDTSGQYETILF 1043


>gi|319407174|emb|CBI80813.1| DNA polymerase III alpha subunit [Bartonella sp. 1-1C]
          Length = 1140

 Score = 1142 bits (2955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/1025 (56%), Positives = 745/1025 (72%), Gaps = 12/1025 (1%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75
            +HS+YSLLEGAL +  I+    +D+ PAIAITDTNNLF ALEFSQ   + GIQPIIGCQL
Sbjct: 1    MHSAYSLLEGALKIKQIIQHAISDRMPAIAITDTNNLFGALEFSQYCFSDGIQPIIGCQL 60

Query: 76   DIDMQD---NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             ID  D   N  +T    +      SIVL  ++  GY  L+ LVSR YL         I 
Sbjct: 61   AIDFGDENCNSPLTKLRHSS--DYSSIVLFAASETGYSHLVRLVSRAYLDKNDTDLPHIK 118

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              +L     EG+I LTGG  GPI+ A   +  + A +RL   KK+FGDRLY+ LQRH  Y
Sbjct: 119  ADFLLR-HHEGIIALTGGPGGPINSALTEDKKERAIERLTYLKKIFGDRLYIELQRHGSY 177

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
            DR  E  +++LAYT+E+PLVATN + FL++E Y AHD LMAVA   VVS  +R RVT DH
Sbjct: 178  DRKVEEALIELAYTYEIPLVATNEAFFLNKEGYAAHDALMAVAEGKVVSNPNRKRVTLDH 237

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQKEEENE 310
            YLK++ EMVS+F DLPEALEN+VEIA RC     +  PILP FIE+  D   + + E  E
Sbjct: 238  YLKSQDEMVSLFFDLPEALENSVEIALRCHAYAPIRKPILPGFIERSADTSSVLEAEAKE 297

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L ++A AGL++RL    +A+GY   DY QRL++E++VI RM+FSGYFLIV+DFI+WAK +
Sbjct: 298  LLDQAKAGLKMRLETIGLAEGYTIADYEQRLNYEISVITRMQFSGYFLIVSDFIKWAKAH 357

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+RR+EV
Sbjct: 358  DIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDFCQERREEV 417

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL- 489
            IRYVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY  VD L KL+P  P   + L 
Sbjct: 418  IRYVQQKYGCDQVAQIITFGKLQARAVLRDVGRVLEVPYRLVDYLTKLVPATPGSNIELA 477

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            QAI D+ +F E +  DP + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVPMYRD 
Sbjct: 478  QAIIDEPKFEEEKKKDPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVPMYRDP 537

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
            RSD+PVTQFNMK++E++GL+KFDFLGLKTLT+L+ ++DF+A++G KVDLS IP +D  TY
Sbjct: 538  RSDMPVTQFNMKYVEQSGLVKFDFLGLKTLTVLKMAVDFVARKGTKVDLSHIPLNDEATY 597

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             +++   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN RK+ +E
Sbjct: 598  AMMSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENISTYNIRKHKEE 657

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +I SIHP ID ++KETQGVI+YQEQVMQIAQ L+GYSL EAD+LRRAMGKKI +EM +Q+
Sbjct: 658  EITSIHPKIDHLVKETQGVIVYQEQVMQIAQELAGYSLGEADLLRRAMGKKIHKEMQEQR 717

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             RF+SGA   G+ K  A  IF+LLAKFADYGFNKSHA AYA++SY TA+MK H+PVEFLA
Sbjct: 718  ARFVSGAVDGGLDKEQANVIFDLLAKFADYGFNKSHATAYAIVSYHTAYMKAHHPVEFLA 777

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            ASMT +M N +K+  F ++A +  I+++ P V T    F+VG+N IYYSL+A+KGVG   
Sbjct: 778  ASMTYDMTNTDKLNDFRREALRLGIEVIAPCVQTSHRIFEVGENCIYYSLSAVKGVGDMV 837

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              HI+    DKPF  LEDFC R+D + +N+R +ESL++AGA DCF  +R  LL SL  + 
Sbjct: 838  VDHIVACRGDKPFRDLEDFCERIDPRIVNKRAMESLIYAGAFDCFNVAREVLLASLVTLN 897

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
              A  +  N ++   +IF    G   + + L + S  + + +   E +V+GFYFS HPL 
Sbjct: 898  ARALRILDNNSSGQVDIF-EMVGGLKEPLILSQASPWSVAEKLHYEFQVIGFYFSAHPLS 956

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             Y+ +L K  ++ +    A+++G     RLA  VV+KQ +KT+ G ++G + FS+ + +Y
Sbjct: 957  EYQDVLIKKRVQTWNNFAASVKGGATAARLAGTVVAKQIRKTKSGKKMGVIQFSDTSGQY 1016

Query: 1028 EANFF 1032
            EA  F
Sbjct: 1017 EAVIF 1021


>gi|298291824|ref|YP_003693763.1| DNA polymerase III subunit alpha [Starkeya novella DSM 506]
 gi|296928335|gb|ADH89144.1| DNA polymerase III, alpha subunit [Starkeya novella DSM 506]
          Length = 1149

 Score = 1138 bits (2943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/1027 (54%), Positives = 739/1027 (71%), Gaps = 17/1027 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHSS+SLLEGAL++  + +    D+QPAIA+TDT NLF ALEFS+K   +GIQP
Sbjct: 12   GFVHLHVHSSFSLLEGALTIGKLAELAKKDRQPAIALTDTGNLFGALEFSEKMAGSGIQP 71

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC L +D          G+      P +VLL  + EG++ L+ELVSR +L      + 
Sbjct: 72   ILGCALSVDFPGPAPRGPAGQQ----RPRVVLLAMSEEGWKNLMELVSRSFLDTASDGAP 127

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I L WL E  T GLI LTGG SGPIDRA    S   AE+RL T  +LFGDRLYV +QRH
Sbjct: 128  HIKLDWL-EGRTGGLIALTGGPSGPIDRALAAGSHDQAEQRLHTLAELFGDRLYVEIQRH 186

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +R  E+ +++LAY  +LPLVATN   F  ++DYEAHD L+ +A   +V++ DR ++
Sbjct: 187  GVAEERRVETALIELAYRLDLPLVATNEPFFAGQDDYEAHDALICIAEGRLVAEGDRRQL 246

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            TP+H  + R+EM+++F+DLPEAL NTVEIARRC++  +   PILPRF       ++++E 
Sbjct: 247  TPEHRFRTRAEMMALFADLPEALANTVEIARRCAYRPRTVKPILPRFT------MERDEA 300

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             ELR +A  GL  RLA    A G   +DY  RL FEL++I +MKF GYFLIV+DFI+WAK
Sbjct: 301  EELRVQAEEGLRKRLAVHGPAPGLAEKDYEDRLAFELSIIEKMKFPGYFLIVSDFIKWAK 360

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               IPVGPGRGSGAGS+ AY+LTITD+DPLRF LLFERFLNP+R+SMPDFDIDFCQ+RRD
Sbjct: 361  AQGIPVGPGRGSGAGSLVAYSLTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQERRD 420

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVIRYVQ +YG ++VAQIITFG+LQA+  LRDVGR L+MPY QVD+LCKL+P +PA+PV+
Sbjct: 421  EVIRYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLCKLVPQNPANPVT 480

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L QAI  + R +     +P V R  +I+ KLEGL RHASTHAAGIVIGDR LS LVP+YR
Sbjct: 481  LTQAIEGEPRLQAESEQNPVVKRAFDIATKLEGLNRHASTHAAGIVIGDRKLSNLVPLYR 540

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D RSD+PVTQ+NMKW+E+AGL+KFDFLGLKTLT+LQ ++  +AQ G+++DLS IP +D +
Sbjct: 541  DPRSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTVLQTAVRLVAQLGIQLDLSTIPLNDEK 600

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +LT   T+G+FQ+ESSGMR+AL  M+PD +EDIIALV+LYRPGP+ NI VY   KNG
Sbjct: 601  TYAMLTRGETVGVFQVESSGMRRALVDMKPDRLEDIIALVALYRPGPMANIPVYCAVKNG 660

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E+ V  HP ++  LKET GVIIYQEQVMQIAQ LSGYSL EAD+LRRAMGKKI+ EMDK
Sbjct: 661  HEQAVYAHPALESSLKETYGVIIYQEQVMQIAQTLSGYSLGEADLLRRAMGKKIRAEMDK 720

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+ERF+SGA + G++K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK +Y  EF
Sbjct: 721  QRERFVSGAVERGVAKAKASEIFDLLAKFADYGFNKSHAAAYALVSYQTAYMKANYATEF 780

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            LAASMTL+M N +K+ +F Q+A++  I+++PPSVN    +F V + RI Y+LAAIKGVG 
Sbjct: 781  LAASMTLDMGNTDKLAEFRQEAQRLGIEVVPPSVNHSGREFAVKEGRILYALAAIKGVGV 840

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                 I+EA  D+PF SL DF +R+++K LN+R +ESLV AGA D    +R +   ++D+
Sbjct: 841  HAVEAIVEARGDRPFASLSDFAARINAKALNKRTMESLVNAGAFDALEPNRARAAAAIDS 900

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            I  +A  V         N+F       + ++ +   +    + + + E   +GF+ +GHP
Sbjct: 901  ILAHAASVGAEAAIGQGNMFGGPAA--ATELPIPNATPWLPAEKLQREYDAIGFFLTGHP 958

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y   L ++ ++ + +   ++R  +I  RLAA VVS+Q+++T+ G+++G V  S+P+ 
Sbjct: 959  LDEYGKALDRLRVQRWSDFTRSVRAGSIAGRLAATVVSRQERRTKTGNKMGIVGLSDPSG 1018

Query: 1026 EYEANFF 1032
            ++EA  F
Sbjct: 1019 QFEAVLF 1025


>gi|328543710|ref|YP_004303819.1| DNA polymerase III subunit alpha [Polymorphum gilvum SL003B-26A1]
 gi|326413454|gb|ADZ70517.1| DNA polymerase III subunit alpha [Polymorphum gilvum SL003B-26A1]
          Length = 1146

 Score = 1120 bits (2897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/1029 (55%), Positives = 728/1029 (70%), Gaps = 12/1029 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VHS+ SLLEGAL +  +LD   AD QPA+AITDT NLF A EFS KA  AGIQP
Sbjct: 5    GFVHLRVHSALSLLEGALPIKKLLDLAKADAQPALAITDTGNLFGAQEFSGKAWGAGIQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGCQL +   D      +G+ P   V   VLL ++  GY  L+EL SR YL        
Sbjct: 65   IIGCQLAVAFDDGGGEDRRGEPPLLDV---VLLAASEAGYGNLMELSSRAYLDTATGLKP 121

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +  + L+E  + GLI+LTGG +GPI RA    +  +AE RL      F +R YV LQRH
Sbjct: 122  HVPAALLEE-KSGGLILLTGGVNGPIGRALLAGNRTLAEARLKRLAAAFPNRTYVELQRH 180

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +R  E   ++LAY   LPLVATN + F   EDYEAHD L+ +A   V+ ++DR ++
Sbjct: 181  GMAEERRCEPGFLELAYELGLPLVATNEAFFPKREDYEAHDALICIAEGRVLIEEDRRKL 240

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306
            TP+HY K+R+EM+ +F DLPEA  NTVEIARRC +      PILPRF   + + +  +K 
Sbjct: 241  TPEHYFKSRAEMLELFCDLPEATANTVEIARRCHYRPLRRDPILPRFAGADADPEAAEKA 300

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E  ELR +A  GL+ RL    +A G   QDY  RLD+EL VI RMKF GYFLIVADFI+W
Sbjct: 301  EAEELRRQARDGLKARLEAHGLAPGLGQQDYWDRLDYELGVIERMKFPGYFLIVADFIKW 360

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK ++IPVGPGRGSGAGSV A+ALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQ R
Sbjct: 361  AKAHDIPVGPGRGSGAGSVVAWALTITDLDPMRFSLLFERFLNPERVSMPDFDIDFCQYR 420

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVIRYVQ KYG  +VAQIITFGSLQA+A LRDVGR LQMPY QVDRLCKL+P +PA+P
Sbjct: 421  REEVIRYVQEKYGRRQVAQIITFGSLQARAVLRDVGRVLQMPYGQVDRLCKLVPANPANP 480

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+L QAI D+ R REA   +  VDRLL ++QKLEGLYRHASTHAAG+VIGDRPL QLVP+
Sbjct: 481  VTLAQAIGDEPRLREAAREEEIVDRLLTMAQKLEGLYRHASTHAAGVVIGDRPLEQLVPL 540

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD RSD+PV QFNMK +E AGL+KFDFLGLKTLT++  ++  +A++GV VD++ +P DD
Sbjct: 541  YRDPRSDMPVAQFNMKMVEDAGLVKFDFLGLKTLTVIDTAVKLIARKGVTVDMASVPLDD 600

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              TY LL    T+G+FQLES GMR+A+ GM+PD  EDIIALV+LYRPGP++NI VYN  K
Sbjct: 601  ARTYQLLARGETVGVFQLESQGMRRAIAGMKPDRFEDIIALVALYRPGPMENIPVYNAVK 660

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+++   +HPL++P+LKET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI  EM
Sbjct: 661  HGEQEADYLHPLLEPILKETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIAAEM 720

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            + Q+ RF+ GA + G+ +  A  IF+L+AKFA+YGFNKSHAAAYA++SY TAW+K ++PV
Sbjct: 721  EVQRARFVDGAVERGVDRDQAGTIFDLVAKFANYGFNKSHAAAYALVSYHTAWLKANHPV 780

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+AASMTL++ N +K+  F Q+AR+  I I+PPS+N     F V D RI Y+L AIKGV
Sbjct: 781  EFMAASMTLDLGNTDKLGDFRQEARRMGIAIVPPSINRSMHPFDVDDGRIVYALGAIKGV 840

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G    +HI+EA   +PF SL DF  RV  + LN+R LESL  AGA D    +R ++L+ L
Sbjct: 841  GEQAVQHIVEARGTQPFRSLGDFARRVSPRFLNKRTLESLAAAGAFDDLEPNRARVLEGL 900

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D I   AQ  E+N       +F        + + L + +    + R + E   +GFY S 
Sbjct: 901  DRIIGIAQRTEENSVLGQNELFGGG--GEEEDLHLPEVAAWMPAERLQREHAAIGFYLSS 958

Query: 966  HPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            HPLD Y+P+L +M ++ + + S A  RG +  RLA  V+S+Q++KT+ G+R+G V  S+ 
Sbjct: 959  HPLDEYQPLLERMRVQSWAQFSEAVKRGASAGRLAGTVISRQERKTKSGNRMGIVRLSDA 1018

Query: 1024 AKEYEANFF 1032
            + ++EA  F
Sbjct: 1019 SGQFEALLF 1027


>gi|118590015|ref|ZP_01547419.1| DNA polymerase III subunit alpha [Stappia aggregata IAM 12614]
 gi|118437512|gb|EAV44149.1| DNA polymerase III subunit alpha [Stappia aggregata IAM 12614]
          Length = 1154

 Score = 1115 bits (2883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/1029 (54%), Positives = 729/1029 (70%), Gaps = 14/1029 (1%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +VHL+VHS+ SLLEGAL +  +LD   AD QPA+AI DTNNLF A EF+ KA  AGIQPI
Sbjct: 14   YVHLRVHSALSLLEGALPIKKLLDLAKADDQPALAIADTNNLFGAQEFATKAWGAGIQPI 73

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
              CQL +   D L+   +G+   P +  +VLL  T  GY  L+EL SR +L  +      
Sbjct: 74   AACQLSVFFDDGLESGRRGE---PALSDVVLLAMTEAGYGNLMELSSRAFLDTETGLRPH 130

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   +L    +EG+I+LTGG  GPI  A       +A+ RL T    F  R YV +QRH 
Sbjct: 131  VSSGYLLS-KSEGVIVLTGGVGGPIGAALLAGRKDLAKSRLQTLADRFQGRCYVEIQRHG 189

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +R  E   + LAY H LPLVATN + F   EDYEAHD L+ ++   V+ + DR R+T
Sbjct: 190  MEAERKTEDAFLDLAYEHGLPLVATNEAFFPRREDYEAHDALICISEGRVLIEDDRRRLT 249

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQKEE 307
            P+HY K+R+EM ++F+DLPEALE+TVEIARRCSF     APILPRF   + D  + +K E
Sbjct: 250  PEHYFKSRAEMCALFADLPEALESTVEIARRCSFRPLKRAPILPRFAGADADPEEAEKAE 309

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL  +A  GL  RL    +A G   +DY  RLD+E  +I RMKF GYFLIVADFI+WA
Sbjct: 310  AEELIRQAREGLRARLDVHGLAPGLEEKDYWDRLDYETGIIERMKFPGYFLIVADFIKWA 369

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K  +IPVGPGRGSGAGS+ A++LTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQ RR
Sbjct: 370  KAQDIPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFERFLNPERVSMPDFDIDFCQTRR 429

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVIRYVQ KYG ++VAQIITFGSLQA+A LRDVGR LQMPY QVDRLCKL+P +PA+PV
Sbjct: 430  EEVIRYVQEKYGRQQVAQIITFGSLQARAVLRDVGRVLQMPYGQVDRLCKLVPANPANPV 489

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L QAI ++ R REA   +  V+RLL ++QKLEGLYRHASTHAAG+VIGDRPL QLVP+Y
Sbjct: 490  TLGQAIEEEPRLREAAKEEEIVERLLGMAQKLEGLYRHASTHAAGVVIGDRPLEQLVPLY 549

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            RD RSD+PV QFNMK +E+AGL+KFDFLGLKTLT++  ++  + +RG+ VD++ +P DD 
Sbjct: 550  RDPRSDMPVAQFNMKMVEEAGLVKFDFLGLKTLTVIDTAVKLIERRGIDVDVAALPIDDE 609

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY LL    T G+FQLES GMR+A+ GM+PD  EDIIALV+LYRPGP++NI VYN  K+
Sbjct: 610  KTYQLLARGETFGVFQLESQGMRRAIAGMKPDRFEDIIALVALYRPGPMENIPVYNAVKH 669

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G++    +HPL++P+L ET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI  EM+
Sbjct: 670  GEQDPDCLHPLLEPILMETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIAAEME 729

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+ RF+ GA + GI+K+ A  IF+L+AKFA+YGFNKSHAAAYA++SY TAW+K ++PVE
Sbjct: 730  VQRARFVDGAVERGINKSHAGTIFDLVAKFANYGFNKSHAAAYALVSYHTAWLKANHPVE 789

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+AASMTL++ N EK+  + Q+AR+  I+I PPS+N   V F V D +I Y++ AIKGVG
Sbjct: 790  FMAASMTLDLGNTEKLGDYRQEARRMKIEIEPPSINRGQVYFDVADGKILYAMGAIKGVG 849

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 HI+E   DKPF SL DF  R+  K LN+R LE+LV AGA D    +R ++ + LD
Sbjct: 850  EQAVEHIVEVRGDKPFKSLGDFARRISPKALNKRTLENLVAAGAFDELEPNRARVFEGLD 909

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-ITLEKFSVENSSVRFENEQRVLGFYFSG 965
             I   AQ  E+N+T   + +F    G  S++ + L++     +  + + E   +GFY S 
Sbjct: 910  RIMGLAQRTEENKTLGQDELFG---GCDSEEPLQLDEVHGWTNEEKLQREHSAIGFYLSA 966

Query: 966  HPLDVYKPILRKMGIKGYEE-SVATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            HP+D Y  +L KM ++ + + S A  +G ++ RLA  VVS Q++KT+ G+R+G V  S+ 
Sbjct: 967  HPIDEYAAVLEKMRVQPWSQFSEAVKKGASHGRLAGTVVSMQERKTKTGNRMGIVRLSDA 1026

Query: 1024 AKEYEANFF 1032
              +YEA  F
Sbjct: 1027 TGQYEALLF 1035


>gi|154248204|ref|YP_001419162.1| DNA polymerase III subunit alpha [Xanthobacter autotrophicus Py2]
 gi|154162289|gb|ABS69505.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2]
          Length = 1150

 Score = 1110 bits (2871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/1029 (52%), Positives = 728/1029 (70%), Gaps = 11/1029 (1%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL VHSSYSLLEGALS+  + D + AD QPAIA+TDT NLF ALEFS+K   AGIQ
Sbjct: 4    PGFIHLHVHSSYSLLEGALSIGKLADLVKADAQPAIALTDTGNLFGALEFSEKMSGAGIQ 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L +D+ +        +   P  P IVLL  +  G++ L+ LVSR +L    +  
Sbjct: 64   PIAGVSLALDLPEPAGPRGAIR---PKRPRIVLLAQSEPGWRNLMRLVSRSFLETASEDE 120

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI   WL +   +GLI LTGG +GPID+A      ++A +RL     LFGDRLYV +QR
Sbjct: 121  PRILPDWLAD-AHDGLIALTGGPAGPIDKALVSGHPELAAERLDLLASLFGDRLYVEVQR 179

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +R  E+ +++LAY   LPLVA+N   F S+ DYEAHD L+ +A   ++S+ DR R
Sbjct: 180  HDTDAERLAEAGLLELAYAKGLPLVASNEPFFASKTDYEAHDGLLCIAEGRLLSEGDRRR 239

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD-DIQKE 306
            +TP+H  K R+EM+++F+DLPEA  NTVEIARRC++ ++   PILPRF     D D   E
Sbjct: 240  LTPEHRFKTRAEMLALFADLPEATANTVEIARRCAYRVRTVKPILPRFTSGGGDGDPLAE 299

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E  EL  +A  GL  RL +   A G     Y +RL +EL+VI +MKF GYFLIV+DFI+W
Sbjct: 300  EAAELERQAKEGLAQRLEKHGPAPGLDIATYEERLAYELSVITKMKFPGYFLIVSDFIKW 359

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK ++IPVGPGRGSGAGS+ AY+L ITD+DP+RF LLFERFLNPDR+SMPDFD+DFCQ+R
Sbjct: 360  AKAHDIPVGPGRGSGAGSLVAYSLQITDLDPIRFGLLFERFLNPDRVSMPDFDVDFCQER 419

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YVQ +YG  +VAQIITFG+LQA+  LRDVGR L+MPY QVD+LCKL+P +PA+P
Sbjct: 420  RDEVIHYVQERYGRAQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLCKLVPQNPANP 479

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+L QAI D+ R + +R  +  V R  +I+ +LEGL RHASTHAAGIVIGDR L +LVP+
Sbjct: 480  VTLKQAIEDEPRLQASRDQEEVVKRAFDIAVRLEGLNRHASTHAAGIVIGDRKLHELVPL 539

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD +SD+PVTQ+NMKW+E+AGL+KFDFLGLKTLT + K++  + QRG+ +D+S IP DD
Sbjct: 540  YRDPKSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTTIDKAVKLIHQRGIDLDISKIPLDD 599

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +TY +L    T+G+FQ+ES+GMR+AL  M+ D +ED+IALV+LYRPGP+ NI VY + K
Sbjct: 600  PKTYAMLGKGETVGVFQVESAGMRRALVDMKADRVEDLIALVALYRPGPMANIPVYCDCK 659

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+ K   +HP+++P LKET GVIIYQEQVMQIAQ ++GYSL EAD+LRRAMGKKI+ EM
Sbjct: 660  HGRAKPDYLHPMLEPYLKETFGVIIYQEQVMQIAQAMAGYSLGEADLLRRAMGKKIRAEM 719

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +KQ+ERF+SG++  GI K  A  IF+LLAKFADYGFNKSHAAAYA+++YQTAW+K +YP 
Sbjct: 720  EKQRERFVSGSAGRGIEKAQADTIFDLLAKFADYGFNKSHAAAYAIVAYQTAWLKANYPT 779

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EFLAASMTL+M N +K+ +F Q+A++  I+++PP++N    +F V D +I Y++ AIKGV
Sbjct: 780  EFLAASMTLDMGNTDKLAEFRQEAQRLGIEVVPPNINLSAREFAVKDGKIIYAMCAIKGV 839

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G      ++ A  D+PF S  DF SR+  K +N+R LESL+ AG  D    +R +   ++
Sbjct: 840  GGAAVDALVAARGDRPFRSFADFASRLPVKLVNKRTLESLMAAGCFDVLEKNRARAFAAI 899

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            ++I   AQ VE N  +   ++F    G  +  + + + +    S R + E   +GF+ +G
Sbjct: 900  ESIVAEAQRVEANAQSGQNDMFG--SGPSAVSLPIPEVAPWLPSERLQKEYDAIGFFLTG 957

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            HPLD Y   L+KM ++ + +    +R      RLAA VVSKQ+++T+ G+R+G V  S+P
Sbjct: 958  HPLDDYADALKKMRVQSFSDFSRAVRSGAAAGRLAATVVSKQERRTKSGTRMGIVGLSDP 1017

Query: 1024 AKEYEANFF 1032
            +  YEA  F
Sbjct: 1018 SGHYEAVIF 1026


>gi|304391642|ref|ZP_07373584.1| DNA polymerase III subunit alpha [Ahrensia sp. R2A130]
 gi|303295871|gb|EFL90229.1| DNA polymerase III subunit alpha [Ahrensia sp. R2A130]
          Length = 1166

 Score = 1110 bits (2871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/1029 (54%), Positives = 722/1029 (70%), Gaps = 11/1029 (1%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  HS+YSLLEGA+ L  ++   A D QPA+AITD +NLF ALEFS KA   G+QPI
Sbjct: 23   FVHLHTHSAYSLLEGAVPLAKLMTLAADDDQPALAITDRSNLFGALEFSSKAAKEGLQPI 82

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTV--PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IGC L++D  D  + +  G T    V  P++VLL S   GYQ LI LVS  Y+    +  
Sbjct: 83   IGCTLEVDFDDEGRGSRSGSTQQAMVAFPTLVLLASDERGYQNLIRLVSLAYMEGAVESR 142

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I +  L E   +GLI+LTGG+ GPID     +    A  RL      FGDRLY+ LQR
Sbjct: 143  PHISMGQLVE-HNDGLIILTGGAHGPIDAMIVDDHPTEARARLARLNDAFGDRLYIELQR 201

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              GY   RE +++ +AY   + +VATN   F   EDY AHD L+ +A   +VS+ DR R+
Sbjct: 202  QAGYSPKREGEILAMAYELGIGIVATNEVFFAKREDYSAHDTLICIAEGRMVSEDDRRRL 261

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            TPDHYLK+ +EM  +FSDLPEA++NT  IA+RC+F +Q   PILP F     DD    E 
Sbjct: 262  TPDHYLKSTAEMNVLFSDLPEAIDNTTIIAQRCAFAVQELDPILPFFTGGVGDDPLAAEA 321

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             ELR +AV GL+ RLA   +A GY  + Y +RL+FEL+VI  MKF GYFLIVADFI+WAK
Sbjct: 322  AELRKQAVDGLKDRLAVHPLADGYTREQYNERLEFELSVIENMKFPGYFLIVADFIKWAK 381

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  IPVGPGRGSGAGS+ A++LTITD+DPL+FSLLFERFLNP+R+SMPDFDIDFCQDRRD
Sbjct: 382  EQGIPVGPGRGSGAGSLVAWSLTITDLDPLQFSLLFERFLNPERVSMPDFDIDFCQDRRD 441

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVIRYVQ+KYG ++VAQIITFG+LQA+A LRDVGR LQ+PY QVDRLCK++PN+PA+P  
Sbjct: 442  EVIRYVQDKYGRDQVAQIITFGTLQARAVLRDVGRVLQLPYGQVDRLCKMVPNNPANPTP 501

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L +A+ +++   EAR  +  VD L++IS KLEGLYRHASTHAAGIVIGDRPL QLVP+YR
Sbjct: 502  LYRAVVEEAGLIEAR-KEEEVDHLIDISLKLEGLYRHASTHAAGIVIGDRPLDQLVPLYR 560

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D RSD+PVTQFNMKW+EKAGL+KFDFLGLKTLT+++ + ++L +R V+VD+  +  DD  
Sbjct: 561  DPRSDMPVTQFNMKWVEKAGLVKFDFLGLKTLTVIRTAQNYLKERNVEVDVDKLTLDDEA 620

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ +L    T+G+FQLES GMR+AL GM+ D  EDIIALV+LYRPGP++NI  YN RK+G
Sbjct: 621  TFKMLQRGETVGVFQLESMGMRKALIGMKADAFEDIIALVALYRPGPMENIPTYNARKHG 680

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E+    HP I+ +LKETQGVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI  EM+ 
Sbjct: 681  EEEADYYHPKIEHVLKETQGVIIYQEQVMQIAQILSGYSLGEADMLRRAMGKKIASEMEA 740

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+ RF+ G  KN I    A  IF++LAKFADYGFNKSHAAAYA++SYQTAW+K ++PVEF
Sbjct: 741  QRARFVDGCEKNDIKAQQANYIFDVLAKFADYGFNKSHAAAYALLSYQTAWLKANHPVEF 800

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            LA+ MTL+M N +K+  F ++A +  I+++ PSVN+  V F V D +I+Y+LAAIKGVG 
Sbjct: 801  LASLMTLDMGNTDKLNDFYREAVRAKIEVVAPSVNSSQVKFSVKDGKIHYALAAIKGVGA 860

Query: 848  TTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                HI+E    D PF SL  F SRVD K+LNR++LE+L+ AGA D FG +R +L+  LD
Sbjct: 861  QAVAHIVEVRDRDGPFQSLTSFFSRVDPKQLNRKMLENLIHAGAFDGFGPAREELIGGLD 920

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             +  ++  V +N      ++F  + G     + L K +   ++ R + E   +GFYFS H
Sbjct: 921  RLIGHSVRVAENEAIGISDMFGGDTG--ETDVVLPKVAAWAAAERLQREHAAMGFYFSAH 978

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIR---LAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            PLD Y+  L K+  + + +    ++ +      L   V S Q +KT++G R+G    S+ 
Sbjct: 979  PLDEYQTTLEKLRAQSWADFQLAVKASGQAPGILGGTVSSIQYRKTKRGKRMGIGMLSDA 1038

Query: 1024 AKEYEANFF 1032
              ++E   F
Sbjct: 1039 TGQFEVVLF 1047


>gi|158423315|ref|YP_001524607.1| DNA polymerase III subunit alpha [Azorhizobium caulinodans ORS 571]
 gi|158330204|dbj|BAF87689.1| DNA polymerase III alpha subunit [Azorhizobium caulinodans ORS 571]
          Length = 1144

 Score = 1107 bits (2863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/1030 (53%), Positives = 727/1030 (70%), Gaps = 11/1030 (1%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            + P FVHL VHSSYSLLEGAL+L  + D   AD QPA+A+TDT NLF ALEFS+K   AG
Sbjct: 2    RDPGFVHLHVHSSYSLLEGALTLGKLADFAKADAQPALALTDTGNLFGALEFSEKMYGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPI GC L +D+ + +      +   P  P IVLL +  +G++ L+ LVSR YL     
Sbjct: 62   IQPIAGCSLALDLPEPVAP----RGIVPKKPRIVLLAAREQGWRNLMTLVSRAYLETPDG 117

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            +  R+ L WL E+  +GLI LTGG +GP+D+A       VA  RL     ++GDRLYV L
Sbjct: 118  EEPRVTLDWLSEL-NDGLIALTGGPAGPLDKALVAGHGDVAASRLDQLTAIYGDRLYVEL 176

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH    +R  E  ++ LAY   LPLVA N   F ++ DY AHD L+A+A S ++S+ DR
Sbjct: 177  QRHNWDPERIAEPGLLDLAYAKGLPLVAANEPFFGAQSDYNAHDALIAIAESKLLSEGDR 236

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R+TP+H  K R+EM+ +F+DLPEA  NTVEIA+RC++ ++   PILPRF      D   
Sbjct: 237  RRLTPEHRFKTRAEMLELFADLPEATANTVEIAQRCAYRVRTAKPILPRFTSGGGGDALA 296

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            EE  EL  +A  GL  RLA+   A+G   + Y +RL +E++VI +MKF GYFLIV+DFI+
Sbjct: 297  EEAAELERQAQEGLAARLAKHGPAEGLDTKIYEERLAYEISVITKMKFPGYFLIVSDFIK 356

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK ++IPVGPGRGSGAGS+ AY+L ITD+DPLRF LLFERFLNPDR+SMPDFD+DFCQD
Sbjct: 357  WAKAHDIPVGPGRGSGAGSLVAYSLQITDLDPLRFGLLFERFLNPDRVSMPDFDVDFCQD 416

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI YVQ +YG  +VAQIITFG+LQA+  LRDVGR L+MPY QVD+LCKL+P +PA+
Sbjct: 417  RREEVIDYVQKRYGRSQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLCKLVPQNPAN 476

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            PV+L QAI ++ R +EAR  +  V +  +I+ +LEGL RHASTHAAGIVIGDRPL +LVP
Sbjct: 477  PVTLKQAIEEEPRLQEARDEEEVVKQAFDIAVRLEGLNRHASTHAAGIVIGDRPLHELVP 536

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +YRD +SD+PVTQ+NMKW+E+AGL+KFDFLGLKTLT +  ++  + QRG+ +D+S IP D
Sbjct: 537  LYRDPKSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTTITTAVKLIRQRGIDLDISKIPLD 596

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY +L    T+G+FQ+ES+GMR+AL  M+ D IED+IALV+LYRPGP+ NI VY + 
Sbjct: 597  DPKTYAMLARGETVGVFQVESAGMRRALVDMKADRIEDLIALVALYRPGPMANIPVYCDC 656

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+ +   IHP ++P LKET GVIIYQEQVMQIAQ LSGYSL EAD+LRRAMGKKI+ E
Sbjct: 657  KHGRAEPDYIHPKLEPYLKETFGVIIYQEQVMQIAQALSGYSLGEADLLRRAMGKKIRAE 716

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M+KQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA+++YQTAW+K +Y 
Sbjct: 717  MEKQRARFVDGAQERGVPKAQADTIFDLLAKFADYGFNKSHAAAYALVAYQTAWLKANYA 776

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EFLAASMTL+M N +K+ +F Q+A++  IQ++PP++N    DF V D +I Y++AAIKG
Sbjct: 777  TEFLAASMTLDMGNTDKLAEFRQEAQRLGIQVVPPNINLSHRDFAVVDGKIIYAMAAIKG 836

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG      ++ +   +PF  L DF +R   K LN+R LE+L  AG  D    +R ++  +
Sbjct: 837  VGGHAVDALVASRGKEPFTDLADFANRFPVKHLNKRTLENLAAAGCFDVLEKNRARVFAA 896

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            LD +  +AQ VE +R++   ++F    G    K+ L        + R + E   +GF+ +
Sbjct: 897  LDAVVAHAQRVEADRSSGQNDMFG--SGPVKAKLPLPDAQPWEPAERLKREYDTIGFFLT 954

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            GHPLD Y P L+KM ++ + +    +R      RLAA VVS+Q++KT+ G+R+G V  S+
Sbjct: 955  GHPLDDYAPALKKMRVQQFSDFSRAVRQGAAAGRLAATVVSRQERKTKTGNRMGIVGLSD 1014

Query: 1023 PAKEYEANFF 1032
            P+  +EA  F
Sbjct: 1015 PSGHFEAVLF 1024


>gi|307942140|ref|ZP_07657491.1| DNA polymerase III subunit alpha [Roseibium sp. TrichSKD4]
 gi|307774426|gb|EFO33636.1| DNA polymerase III subunit alpha [Roseibium sp. TrichSKD4]
          Length = 1159

 Score = 1106 bits (2861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/1028 (53%), Positives = 722/1028 (70%), Gaps = 13/1028 (1%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS+ SLLEGAL +  +LD   +D QPA+ ITDT NLF A EFS KA  +GIQPI
Sbjct: 20   FVHLRVHSALSLLEGALPIKKLLDLAKSDNQPALGITDTGNLFGAQEFSAKAWGSGIQPI 79

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGCQL I   D+++   +G+ P   V   V++     GY  L+EL SR +L         
Sbjct: 80   IGCQLAIHFSDDVEPERKGELPLCHV---VVIAMDEVGYGNLMELTSRAFLDTDTGLLPH 136

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   +L    ++G+I+L+GG SGP+ +A    + + A +RL    K F DR Y+ +QRH 
Sbjct: 137  VSAEYLAS-HSDGVILLSGGVSGPLGKALLTGNKKAARERLQFLAKAFSDRFYIEIQRHG 195

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +R  ES  + LAY   LP+VATN + F + EDYEAHD L+ ++   V+ + DR R+T
Sbjct: 196  MEAERKTESAFLDLAYEFNLPVVATNEAFFPAREDYEAHDALICISEGRVLIEDDRRRLT 255

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQKEE 307
            P+HY K R+EMV +FSDLPEAL++T+EIARRCS+      PILPRF   + D  + ++ E
Sbjct: 256  PEHYFKTRAEMVDLFSDLPEALQSTLEIARRCSYRPLRRDPILPRFAGADADPEEAERAE 315

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL+ +A  GL+ RL    +A G   +DY  RLD+E  +I RMKF GYFLIVADFI+WA
Sbjct: 316  AEELKRQAREGLQARLDAHGLAPGLEEKDYWDRLDYETGIIERMKFPGYFLIVADFIKWA 375

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K  +IPVGPGRGSGAGS+ A++LTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQ RR
Sbjct: 376  KAQDIPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFERFLNPERVSMPDFDIDFCQTRR 435

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVIRYVQ KYG ++VAQIITFGSLQA+A LRDVGR LQMPY QVDRLCKL+P +PA+PV
Sbjct: 436  EEVIRYVQEKYGRKQVAQIITFGSLQARAVLRDVGRVLQMPYGQVDRLCKLVPANPANPV 495

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L QAI ++ R REA   +  VDRLL+++QKLEGLYRHASTHAAG+VIGDRPL QLVP+Y
Sbjct: 496  TLGQAIDEEPRLREAAKEEEIVDRLLKMAQKLEGLYRHASTHAAGVVIGDRPLEQLVPLY 555

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            RD RSD+PV QFNMK +E AGL+KFDFLGLKTLT++  ++  + +R  K+D++ +P DD 
Sbjct: 556  RDPRSDMPVAQFNMKMVEDAGLVKFDFLGLKTLTVIDTAVKLIERRAEKIDVAGLPIDDK 615

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             TY LL    T G+FQLES GMR+A+ GM+PD  EDIIALV+LYRPGP++NI VYN  K+
Sbjct: 616  PTYELLARGETFGVFQLESQGMRRAIAGMKPDRFEDIIALVALYRPGPMENIPVYNAVKH 675

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G++++  +HPL++P+L ET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI  EM+
Sbjct: 676  GEQEMDCLHPLLEPILSETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIAAEME 735

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+ RF+ GA + GI+K  A  IF+L+AKFA+YGFNKSHAAAYA++SY TAW+K ++PVE
Sbjct: 736  IQRARFVDGAVERGINKGQAGTIFDLVAKFANYGFNKSHAAAYALVSYHTAWLKANFPVE 795

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+AASMTL+M N EK+  F Q+AR+  I ++PPS+N   V F V D +I Y++ AIKGVG
Sbjct: 796  FMAASMTLDMGNTEKLGDFRQEARRMKIDVVPPSINKSQVYFDVADGKILYAMGAIKGVG 855

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 HI+E   D PF  L DF  R+  K LN+R LE+LV AGA D    SR ++L+ LD
Sbjct: 856  EQAVEHIVEVRGDTPFKRLGDFARRISPKFLNKRTLENLVCAGAFDELEPSRARVLEGLD 915

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             +   AQ  E+N       +F    G    ++ L +     +  + + E   +GFY S H
Sbjct: 916  RVMGLAQRTEENAAIGQNELFG---GGGEQELQLPEVHGWTAEEKLQREHNAIGFYLSAH 972

Query: 967  PLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            PLD Y  +L KM ++ +      ++   +N RLA  V+S+Q++KT+ G+R+G V  S+  
Sbjct: 973  PLDEYTNLLEKMRVQQWAPFAEAVKKGASNGRLAGTVISRQERKTKTGNRMGIVRLSDST 1032

Query: 1025 KEYEANFF 1032
             ++E   F
Sbjct: 1033 GQFEGLLF 1040


>gi|254505207|ref|ZP_05117358.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia
            alexandrii DFL-11]
 gi|222441278|gb|EEE47957.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia
            alexandrii DFL-11]
          Length = 1138

 Score = 1096 bits (2835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/1026 (53%), Positives = 720/1026 (70%), Gaps = 14/1026 (1%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            ++VHS+ SLLEGAL +  +LD   AD QPA+AI DTNNLF A EFS KA  AGIQPI  C
Sbjct: 1    MRVHSALSLLEGALPIKRLLDLAKADDQPALAIADTNNLFGAQEFSSKAWGAGIQPITAC 60

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            QL +   D L    +G+   P +  +VL+  T  GY  L+EL SR +L  +      + +
Sbjct: 61   QLSVFFDDGLDSGRRGE---PALADLVLIAMTETGYGNLMELTSRAFLDTETGLRPHVSI 117

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGY 192
            S+L +   + +I+LTGGS G I          +A+ RL T    F  R YV +QRH    
Sbjct: 118  SYLLQ-KAQDVIVLTGGSLGAIGAPLLAGRKDLAKSRLKTLDDGFAGRCYVEIQRHGMES 176

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
            +R  E   + LAY   LPLVATN + F + EDYEAHD L+ ++   V+ + DR R+TP+H
Sbjct: 177  ERKTEEAFLDLAYEMGLPLVATNEAFFPAREDYEAHDALICISEGRVLIESDRRRLTPEH 236

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQKEEENE 310
            Y K R+EM  +F+DLPEAL +T+EIA+RCSF     APILPRF   + D  + ++ E  E
Sbjct: 237  YFKTRAEMCVLFADLPEALASTIEIAQRCSFRPMTRAPILPRFAGADADPEEAERAETEE 296

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L+ +A  GL+ RL    +A G   +DY  RLD+E  +I RMKF GYFLIVADFI+WAK +
Sbjct: 297  LKRQAREGLQARLDAHGLAPGLEEKDYWDRLDYETGIIERMKFPGYFLIVADFIKWAKNH 356

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +IPVGPGRGSGAGS+ A++LTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQ RR+EV
Sbjct: 357  DIPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFERFLNPERVSMPDFDIDFCQSRREEV 416

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL- 489
            IRYVQ KYG ++VAQIITFGSLQA+A LRDVGR LQMPY QVDRLCKL+P +PA+PV+L 
Sbjct: 417  IRYVQEKYGRQQVAQIITFGSLQARAVLRDVGRVLQMPYGQVDRLCKLVPANPANPVTLG 476

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            QAI D+ R REA   +  V+RLL ++QKLEGLYRHASTHAAG+VIGDRPL QLVP+YRD 
Sbjct: 477  QAIEDEPRLREAAREEEIVERLLGMAQKLEGLYRHASTHAAGVVIGDRPLEQLVPLYRDP 536

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
            RSD+PV QFNMK +E AGL+KFDFLGLKTLT++  ++  + +RG+ VD++ +P DD ++Y
Sbjct: 537  RSDMPVAQFNMKMVEDAGLVKFDFLGLKTLTVIDTAVKLIERRGINVDVASLPIDDRKSY 596

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LLT   T G+FQLES GMR+A+ GM+PD  EDIIALV+LYRPGP++NI VYN  K+G++
Sbjct: 597  ELLTRGETFGVFQLESQGMRRAVAGMKPDRFEDIIALVALYRPGPMENIPVYNAVKHGEQ 656

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +   +HPL++P+L ET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI  EM+ Q+
Sbjct: 657  EPDCLHPLLEPILMETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIAAEMEVQR 716

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             RF+ GA + GI+KT A  IF+L+AKFA+YGFNKSHAAAYA++SY TAW+K ++ VEF+A
Sbjct: 717  ARFVDGAVERGINKTQAGTIFDLVAKFANYGFNKSHAAAYALVSYHTAWLKANHSVEFMA 776

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            ASMTL+M N EK+  F Q+AR+  I+++PPS+N   V F V D +I Y++ A+KGVG   
Sbjct: 777  ASMTLDMGNTEKLGDFRQEARRMGIEVVPPSINRSQVYFDVSDGKILYAMGAVKGVGEQA 836

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              HI+E     PF SL DF  R+  K LN+R LE+LV AGA D    +R ++ + LD I 
Sbjct: 837  VEHIVEVRGQTPFQSLGDFARRISPKALNKRTLENLVAAGAFDELEPNRARVFEGLDRII 896

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDK-ITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              AQ  E+N+T   + +F    G+ S++ + L++     S  + + E   +GFY S HP+
Sbjct: 897  GLAQRTEENKTLGQDELFG---GSDSEEPLQLDEVHGWTSEEKLQREHSAIGFYLSAHPI 953

Query: 969  DVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            D Y  +L KM  + + +    ++   +  RLA  V+S Q++KT+ G+R+G    S+   +
Sbjct: 954  DEYASVLEKMRAQPWAQFADAVKKGASAGRLAGTVISMQERKTKSGTRMGIARLSDATGQ 1013

Query: 1027 YEANFF 1032
            YEA  F
Sbjct: 1014 YEALLF 1019


>gi|254469239|ref|ZP_05082644.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio
            sp. JE062]
 gi|211961074|gb|EEA96269.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio
            sp. JE062]
          Length = 1144

 Score = 1086 bits (2809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1032 (51%), Positives = 731/1032 (70%), Gaps = 16/1032 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SP FVHL+VHS+YSLLEGAL +  ++D  + D+QPA+AITD+ NLF ALEFS+KA  AG+
Sbjct: 3    SPGFVHLRVHSAYSLLEGALPIGKLIDLASKDEQPALAITDSGNLFGALEFSEKAFGAGM 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            QPIIGCQ+ ++ +D   ++         V  +VLL +  EGY+ L++LVSR +L  +   
Sbjct: 63   QPIIGCQVSVNFEDQPDVSGDD-----AVSDLVLLAANEEGYENLMDLVSRAFLDTEPGF 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               + +S +    + G+I+LTG S GPI+         +A+ RL   +  FGDRLYV LQ
Sbjct: 118  KANVPISRVLN-KSGGVIVLTGASEGPINSQLREGHVDLAKSRLELLQNTFGDRLYVELQ 176

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            RH  +G +   E +++ LAY   +P+VATN + F + +DYEAHD L+A++   V+ + DR
Sbjct: 177  RHNMKGEEDV-EPELLNLAYELNIPIVATNEAFFPNPDDYEAHDALIAISEGRVLVETDR 235

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--IEKECDDI 303
             ++TP+H  K R +M+ +FSDLPEALEN+V IA+RC +     APILPRF   + + ++ 
Sbjct: 236  RQLTPEHCFKTREQMMELFSDLPEALENSVVIAQRCHYRPLKRAPILPRFAGADADAEEA 295

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ E  EL  +A  GL+ RL    +A     +DY  RLD+EL +I RMKF GYFLIVADF
Sbjct: 296  ERAEAEELTRQAKEGLQARLDVHGLAPDLEEKDYWDRLDYELGIIIRMKFPGYFLIVADF 355

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK  +IPVGPGRGSGAGS+ A++LTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFC
Sbjct: 356  IKWAKNEDIPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFERFLNPERVSMPDFDIDFC 415

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q+RR+EVIRYVQ KYG E+VAQIIT+G+LQAKA LRDVGR LQMPY QVDRL KL+P +P
Sbjct: 416  QNRREEVIRYVQRKYGREQVAQIITYGTLQAKAVLRDVGRVLQMPYGQVDRLSKLVPGNP 475

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A+P +L +A+  + R REA   +  VDRLL+++ KLEGLYRHASTHAAG+VIGDRPL QL
Sbjct: 476  ANPCTLPEALEQEPRLREAAKQEEVVDRLLKMAMKLEGLYRHASTHAAGVVIGDRPLEQL 535

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD RSD+PV QFNMKW+E AGL+KFDFLGLKTLT++  ++  + +RG++V +  IP
Sbjct: 536  VPLYRDPRSDMPVAQFNMKWVEAAGLVKFDFLGLKTLTVIDTAVSHIKKRGIEVKIEEIP 595

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  TY LL    T+G+FQLES GMR+A+ GM+PD  EDI+ALV+LYRPGP+DNI +YN
Sbjct: 596  IDDPLTYKLLAAGETVGVFQLESQGMRRAIAGMRPDRFEDIVALVALYRPGPMDNIPIYN 655

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K+G+++   +HPL++P+L ET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI 
Sbjct: 656  AVKHGEQEPDYLHPLLEPILTETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIA 715

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EM+ Q+ RF+ GA +  + K  A  I++L+AKFA+YGFNKSHAAAYA+++YQTAW+K +
Sbjct: 716  SEMEIQRARFVEGAVEQKVDKDQAGMIYDLVAKFANYGFNKSHAAAYALVAYQTAWLKAN 775

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YPVEFLA  MTL++ N +K+  F Q+A +  I+++PP+VN   V F V D +I Y++ AI
Sbjct: 776  YPVEFLAGIMTLDLGNTDKLSDFRQEAMRMGIEVVPPNVNKSGVHFDVQDGKIVYAMGAI 835

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KGVG     HI+E   D+PF  L DF +R+  K LN+R +E+L+ AGA D    +R QLL
Sbjct: 836  KGVGEQAVEHIVEVRGDEPFKDLADFATRISPKVLNKRTIENLISAGAFDELNPNRAQLL 895

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              LD I   AQ  E+N+ +   + F  +     + + L        S R + E   +GFY
Sbjct: 896  DGLDRIIGMAQRTEENKNSGQNDFFGGDNA--PEPLILNPTDPWLPSERLQKEHAAVGFY 953

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTF 1020
             S HPLD Y+ +  K+ ++ +++   +++  +   RLA  V +KQ++KTR G+++G V  
Sbjct: 954  ISAHPLDEYRELFTKLRVQLWKDFERSVKAGSSAGRLAGTVTAKQERKTRTGNQMGIVRI 1013

Query: 1021 SEPAKEYEANFF 1032
            S+P  +YEA  F
Sbjct: 1014 SDPTGQYEAVMF 1025


>gi|146341074|ref|YP_001206122.1| DNA polymerase III subunit alpha [Bradyrhizobium sp. ORS278]
 gi|146193880|emb|CAL77897.1| DNA polymerase III, alpha subunit [Bradyrhizobium sp. ORS278]
          Length = 1174

 Score = 1079 bits (2791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/1038 (52%), Positives = 717/1038 (69%), Gaps = 21/1038 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VHS+YSLL+G++ +  + +   AD+QPA+A+TDT+N+F ALEFS K    GI
Sbjct: 3    SAGFVHLHVHSAYSLLKGSIKIAKLGELAKADRQPALALTDTDNMFGALEFSDKMAGYGI 62

Query: 68   QPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            QPI GC+L ID  D +    N G    P+   IVLL +  EGY+ L+ L SR +L     
Sbjct: 63   QPIAGCELAIDFGDMDPNARNAGAVAQPS--RIVLLAANEEGYRHLMRLNSRAFLETPTH 120

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q+  I   WL E G +GLI LTGG  GPI  A   + + +A +R       FGDRLY+ L
Sbjct: 121  QAPHIKFDWLTE-GVDGLIALTGGPDGPISLALQHDMAALAAQRCERLAGQFGDRLYIEL 179

Query: 187  QRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            QRH G +R R  E  ++ +AY   LPLVATN   F S +DYEAHD L+ +A   +++  D
Sbjct: 180  QRH-GTERERRVEGGLIDIAYDKGLPLVATNEPYFASTDDYEAHDALLCIAGGHLIADTD 238

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI----EKEC 300
            R ++TPDH  K R+EM  +F+DLPEAL +TVEIA RCS+  +   PILP F       + 
Sbjct: 239  RVQLTPDHRFKTRAEMAVLFADLPEALASTVEIAERCSYRPRTRKPILPFFTVGAGTGDT 298

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D    E  EL+ +A  GLE RL    +A G   +DY++RL FEL+VI RMK++GYFLIV
Sbjct: 299  VDAASAEAAELKRQAEEGLERRLKVHGMAPGMTEEDYQKRLAFELDVIMRMKYAGYFLIV 358

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+WAK + IPVGPGRGSGAGS+ A+ LTITD+DP+RF+LLFERFLNP+R+SMPDFDI
Sbjct: 359  SDFIKWAKAHGIPVGPGRGSGAGSLVAWVLTITDLDPMRFALLFERFLNPERVSMPDFDI 418

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQDRR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P
Sbjct: 419  DFCQDRRGEVISYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVP 478

Query: 481  NDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +PA PV+L A I  + + +  R  DP V R  +I+ +LEGL RHASTHAAGIVIGDRPL
Sbjct: 479  QNPAAPVTLAAAIEGEPKLQAFRDEDPVVARAFDIAMRLEGLTRHASTHAAGIVIGDRPL 538

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            S+LVPMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QR V VDL+
Sbjct: 539  SELVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRDVHVDLA 598

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P DD  +Y +L     +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI 
Sbjct: 599  TLPIDDAASYQMLARGDVVGVFQVESQGMRRALIDMRPDRFEDIIALVALYRPGPMANIP 658

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  RK+G+E+   +HP+++P+LKET GVIIYQEQVMQ+AQ +SGYSL EAD+LRRAMGK
Sbjct: 659  TYCARKHGEEEPEYLHPILEPILKETFGVIIYQEQVMQVAQQMSGYSLGEADLLRRAMGK 718

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KI+ EMDKQ+ RF+ GA KNG+ K  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+M
Sbjct: 719  KIRAEMDKQRVRFVEGAVKNGVPKDQADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYM 778

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYPVEF+AASMTL+++N +K+ +F  +A++  I++ PPS+N     F+V  N I+Y+L
Sbjct: 779  KAHYPVEFIAASMTLDLNNTDKLSEFRAEAQRLGIKVEPPSINRSGPTFEVSGNTIFYAL 838

Query: 840  AAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            AA+KGVG      I+EA +   PF SL DF SRV  + +N+R++E+L  AGA DC   +R
Sbjct: 839  AALKGVGPQAIEMIVEARNKGGPFTSLADFASRVSPRAINKRIIETLAAAGAFDCLDKNR 898

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN--SSVRFENEQ 956
             ++    D I    Q   +  T+   ++F    G  +D   +   ++EN   + R   E 
Sbjct: 899  ARVFAGADAIVAACQRANEAATSGQNDMF----GNAADAPAIILPNIENWLPAERLRREY 954

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSR 1014
              +GF+ SGHPLD Y   L+++ ++ + E    ++      ++AA VVS+ +++T+ G++
Sbjct: 955  DAIGFFLSGHPLDDYAAALKRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGNK 1014

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            +G +  S+P   +EA  F
Sbjct: 1015 MGIMGLSDPTGHFEAVLF 1032


>gi|316933919|ref|YP_004108901.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris DX-1]
 gi|315601633|gb|ADU44168.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris DX-1]
          Length = 1151

 Score = 1077 bits (2786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1033 (52%), Positives = 710/1033 (68%), Gaps = 18/1033 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS+YSLL+G++ +  + +   AD+QPA+A+TDT+N+F  LEFS K   +GIQP
Sbjct: 5    GFVHLHVHSAYSLLKGSMKIAKLAELAKADRQPALALTDTDNMFGGLEFSDKLSGSGIQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +L ID  D    +  G    P    IVLL +  +GY+ L+ L SR +L     Q  
Sbjct: 65   IVGLELGIDFGDQDPNSRHGALATPA--RIVLLAAREQGYRSLMRLNSRAFLETPVNQVP 122

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I L WL +  T+G+I LTGG  GPI  A   + + +A +R    ++ FGDRLYV LQRH
Sbjct: 123  HIKLDWL-DGETDGVIALTGGPDGPISLAMLTDPA-LAAQRCERLQQAFGDRLYVELQRH 180

Query: 190  RG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +R  E  ++ LAY   LPLVATN   F S EDYEAHD L+ +A   ++++ DR + 
Sbjct: 181  GTEAERRAEGGLIDLAYDKGLPLVATNEPHFASTEDYEAHDALLCIASGKLIAETDRVQF 240

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE----KECDDIQ 304
            TPDH  K R+EM  +F+DLPEAL +TVEIA+RC++      PILP F       +  +  
Sbjct: 241  TPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGAGVSDAVEAA 300

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              E  ELR +A  GL  RL+   ++ G   +DY +RL FEL+VI RMK++GYFLIV+DFI
Sbjct: 301  AAEAAELRRQAELGLAKRLSVHGLSPGTTEEDYNKRLAFELDVITRMKYAGYFLIVSDFI 360

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 361  KWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQ 420

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P +PA
Sbjct: 421  DRRGEVIEYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA 480

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             P++L QAI  + + + AR  DP V R  +I+QKLEGL RHASTHAAGIVIGDRPLS LV
Sbjct: 481  APITLKQAIEGEPKLQAARDEDPIVARAFDIAQKLEGLTRHASTHAAGIVIGDRPLSDLV 540

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT L  ++  L QR + VDL  +P 
Sbjct: 541  PLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRDIHVDLHTLPI 600

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  +Y +L     +G+FQ+ES+GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  Y  
Sbjct: 601  DDAPSYQMLARGDVVGVFQVESAGMRRALIDMRPDRFEDIIALVALYRPGPMANIPTYCA 660

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMGKKI+ 
Sbjct: 661  RKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMGKKIRA 720

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMDKQ+  F+ GA KNG++K  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+MK HY
Sbjct: 721  EMDKQRAIFVEGAVKNGVAKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMKAHY 780

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTLE+ N +K+ +F  +A++  I++  PSVN     F+VG N IYY+L  +K
Sbjct: 781  PVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVGPNTIYYALGGLK 840

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG    + I+EA  DKPF SL DF +RV+ + +NRRV+E L  AGA DC   +R  +  
Sbjct: 841  GVGLQAVQQIVEARGDKPFASLADFAARVNPRAINRRVVECLAAAGAFDCLNSNRAAVFA 900

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLGF 961
              D I    Q   +  T+   ++F    G  SD   I L +      S R   E   +GF
Sbjct: 901  GADAIVAACQRNHEAATSGQNDMF----GGLSDVPSIILPQLDAWLPSERLRREYDAIGF 956

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVT 1019
            + SGHPLD Y   L+++ ++ + E    ++      ++AA VVS+ +++T+ G+++G + 
Sbjct: 957  FLSGHPLDDYATALKRLRVQSWNEFCKAVKSGATAGKVAATVVSRMERRTKTGNKMGIIG 1016

Query: 1020 FSEPAKEYEANFF 1032
             S+P   +EA  F
Sbjct: 1017 LSDPTGHFEAVLF 1029


>gi|209885082|ref|YP_002288939.1| DNA polymerase III subunit alpha [Oligotropha carboxidovorans OM5]
 gi|209873278|gb|ACI93074.1| DNA polymerase III subunit alpha [Oligotropha carboxidovorans OM5]
          Length = 1157

 Score = 1077 bits (2784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1033 (52%), Positives = 713/1033 (69%), Gaps = 14/1033 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SP F+HL VHS+YSLL+G++    +     AD QPA+A+TD +N+F ALEFS+K    GI
Sbjct: 3    SPGFIHLHVHSAYSLLQGSMKTEKLAALAKADNQPALALTDRDNMFGALEFSEKLAGLGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            QPIIGC L +D  D                 IVLL  T + Y+ L+ L SR +L    +Q
Sbjct: 63   QPIIGCALAVDFGDVDPAARNAAAL--APARIVLLAPTEDSYRSLMRLNSRAFLEMPAQQ 120

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            +  I   WL++  T GLI LTGG  GPI +A      ++A +R+     LFGDRLY+ LQ
Sbjct: 121  TPHIKAEWLEQERT-GLIALTGGPEGPISQALMAEHPELALQRVEKLADLFGDRLYLELQ 179

Query: 188  RHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            RH G D  R  ES ++ +AY   LPLVATN   F + EDYE+HD L+ +A   ++++ +R
Sbjct: 180  RH-GLDSERRIESALIDIAYGKGLPLVATNEPYFATVEDYESHDALLCIAGGRLLAETER 238

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDI 303
              +TPDH  K R+EM  +F+DLPEAL +TVEIA+RC+F  +   PILP F        D 
Sbjct: 239  AHLTPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAFRPRKRKPILPHFTVDSDHMADA 298

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              +E  EL+ +A  GL  RL    +A+G   +DYR RL +E++VI RM +SGYFLIV+DF
Sbjct: 299  VSKENAELQKQAEEGLARRLKAHGLAEGKTEEDYRTRLAYEMSVITRMNYSGYFLIVSDF 358

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK   IPVGPGRGSGAGS+ AYALTITD+DPLRF+LLFERFLNP+R+SMPDFDIDFC
Sbjct: 359  IKWAKSQGIPVGPGRGSGAGSLVAYALTITDLDPLRFALLFERFLNPERVSMPDFDIDFC 418

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRR EVI YVQ +YG + VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P +P
Sbjct: 419  QDRRGEVIDYVQRRYGADHVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNP 478

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A PV+L +AI  + + +  R  DP V R  +I+Q+LEGL RHASTHAAGIVIGDRPLS+L
Sbjct: 479  AAPVTLAKAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSEL 538

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L Q  + VDL+ +P
Sbjct: 539  VPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQSNIHVDLAHLP 598

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +TY +LT    +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  Y 
Sbjct: 599  LDDKQTYDMLTRGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYC 658

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMGKKI+
Sbjct: 659  ARKHGDEEPEYLHPVLEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGKKIR 718

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EM+KQ+ RF+SG+ ++ ISK+ A  IFELLAKFADYGFNKSHAAAYA++SYQTA+MK H
Sbjct: 719  AEMEKQRVRFVSGSVEHSISKSQADQIFELLAKFADYGFNKSHAAAYALVSYQTAYMKAH 778

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YPVEF+AASMTL+  N +K+ +F  +A++  I++ PPS+N     F VG+N I+YSLAA+
Sbjct: 779  YPVEFIAASMTLDTGNTDKLSEFRAEAQRLGIKVEPPSINRSEGTFTVGENTIFYSLAAL 838

Query: 843  KGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGVGT     I+EA  +  PF SL DF +RV  + +N+RVLESL  AGA D    +R  +
Sbjct: 839  KGVGTHAVDMIVEARKNGGPFTSLSDFAARVPPRAINKRVLESLAAAGAFDTIEPNRAAV 898

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
                D I    Q   +       ++F  + G     ITL        + R + E   +GF
Sbjct: 899  FAGADAILAACQRSHEEAVLGQSDMFGGQTG--GPVITLPHVEPWLPAERLQREYGAVGF 956

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVT 1019
            + SGHPLD YK +L+++ ++ + E  + ++      ++AA VVS+ +++T+ G+++G + 
Sbjct: 957  FLSGHPLDDYKVVLQRLNVQSWAEFASAVKNGRTAGKVAATVVSRMERRTKTGNKMGIIG 1016

Query: 1020 FSEPAKEYEANFF 1032
             S+P   +EA  F
Sbjct: 1017 LSDPTGHFEAVLF 1029


>gi|192291642|ref|YP_001992247.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris TIE-1]
 gi|192285391|gb|ACF01772.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris TIE-1]
          Length = 1151

 Score = 1073 bits (2774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1033 (51%), Positives = 712/1033 (68%), Gaps = 18/1033 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS+YSLL+G++ +  + +   AD+QPA+A+TDT+N+F  LEFS K    GIQP
Sbjct: 5    GFVHLHVHSAYSLLKGSMKIAKLAELAKADRQPALALTDTDNMFGGLEFSDKLSGYGIQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +L ID  D    +  G    P    IVLL +  +GY+ L+ L SR +L     Q  
Sbjct: 65   IVGLELGIDFGDQDPNSRHGALATPA--RIVLLAAREQGYRSLMRLNSRAFLETPVNQVP 122

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + L WL E  T+G+I LTGG  GPI  A   + + +A +R    ++ FGDRLYV LQRH
Sbjct: 123  HVKLEWL-EGETDGVIALTGGPDGPISLAMLTDPA-LAAQRCERLQQAFGDRLYVELQRH 180

Query: 190  RG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +R  E  ++ LAY   LPLVATN   F S EDYEAHD L+ +A   ++++ DR + 
Sbjct: 181  GTEAERRAEGGLIDLAYDKGLPLVATNEPHFASTEDYEAHDALLCIASGKLIAETDRVQF 240

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQKEE 307
            TPDH  K R+EM  +F+DLPEAL +TVEIA+RC++      PILP F +     D  +  
Sbjct: 241  TPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVSDAAEAA 300

Query: 308  ENE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              E   LR +A  GL  RL+   ++ G   +DY +RL FEL+VI RMK++GYFLIV+DFI
Sbjct: 301  AAEAAELRRQAEQGLAKRLSVHGLSPGTTEEDYNKRLAFELDVITRMKYAGYFLIVSDFI 360

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 361  KWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQ 420

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR EVI YVQ++YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P +PA
Sbjct: 421  DRRGEVIEYVQHRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA 480

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             P++L QAI  + + + AR  DP V R  +I+QKLEGL RHASTHAAGIVIGDRPLS LV
Sbjct: 481  APITLKQAIEGEPKLQAARDEDPIVARAFDIAQKLEGLTRHASTHAAGIVIGDRPLSDLV 540

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT L  ++  L QR + VDL  +P 
Sbjct: 541  PLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRDIHVDLHTLPI 600

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  +Y +L     +G+FQ+ES+GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  Y  
Sbjct: 601  DDAPSYQMLARGDVVGVFQVESAGMRRALIDMRPDRFEDIIALVALYRPGPMANIPTYCA 660

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMGKKI+ 
Sbjct: 661  RKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMGKKIRA 720

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMDKQ+  F+ GA KNG++K  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+MK HY
Sbjct: 721  EMDKQRAIFVEGAVKNGVAKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMKAHY 780

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTLE+ N +K+ +F  +A++  I++  PSVN     F+VG N I+Y+LA +K
Sbjct: 781  PVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVGPNTIFYALAGLK 840

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG    + I+EA  D+PF SL DF +RV+ + +N+RV+E L  AGA DC   +R ++  
Sbjct: 841  GVGMQAVQQIVEARGDRPFTSLADFSARVNPRAINKRVIECLAAAGAFDCLDSNRARVFG 900

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLGF 961
              D I    Q   +  T+   ++F    G  SD   I L +      + R   E   +GF
Sbjct: 901  GADAIVAACQRNHEAATSGQNDMF----GGLSDAPSIILPQLEPWLPAERLRREYDAIGF 956

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVT 1019
            + SGHPLD Y   L+++ ++ + E    ++      ++AA VVS+ +++T+ G+++G + 
Sbjct: 957  FLSGHPLDDYATALKRLRVQSWAEFCKAVKSGATAGKVAATVVSRMERRTKTGNKMGIIG 1016

Query: 1020 FSEPAKEYEANFF 1032
             S+P   +EA  F
Sbjct: 1017 LSDPTGHFEAVLF 1029


>gi|39935989|ref|NP_948265.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris CGA009]
 gi|39649843|emb|CAE28365.1| DNA polymerase III alpha subunit [Rhodopseudomonas palustris CGA009]
          Length = 1151

 Score = 1072 bits (2772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/1033 (51%), Positives = 712/1033 (68%), Gaps = 18/1033 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS+YSLL+G++ +  + +   AD+QPA+A+TDT+N+F  LEFS K    GIQP
Sbjct: 5    GFVHLHVHSAYSLLKGSMKIAKLAELAKADRQPALALTDTDNMFGGLEFSDKLSGYGIQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +L ID  D    +  G    P    IVLL +  +GY+ L+ L SR +L     Q  
Sbjct: 65   IVGLELGIDFGDQDPNSRHGALATPA--RIVLLAAREQGYRSLMRLNSRAFLETPVNQVP 122

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + L WL E  T+G++ LTGG  GPI  A   + + +A +R    ++ FGDRLYV LQRH
Sbjct: 123  HVKLEWL-EGETDGVVALTGGPDGPISLAMLTDPA-LAAQRCERLQQAFGDRLYVELQRH 180

Query: 190  RG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +R  E  ++ LAY   LPLVATN   F S EDYEAHD L+ +A   ++++ DR + 
Sbjct: 181  GTEAERRAEGGLIDLAYDKGLPLVATNEPHFASTEDYEAHDALLCIASGKLIAETDRIQF 240

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQKEE 307
            TPDH  K R+EM  +F+DLPEAL +TVEIA+RC++      PILP F +     D  +  
Sbjct: 241  TPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVSDAAEAA 300

Query: 308  ENE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              E   LR +A  GL  RL+   ++ G   +DY +RL FEL+VI RMK++GYFLIV+DFI
Sbjct: 301  AAEAAELRRQAEQGLAKRLSVHGLSPGTTEEDYNKRLAFELDVITRMKYAGYFLIVSDFI 360

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 361  KWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQ 420

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR EVI YVQ++YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P +PA
Sbjct: 421  DRRGEVIEYVQHRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA 480

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             P++L QAI  + + + AR  DP V R  +I+QKLEGL RHASTHAAGIVIGDRPLS LV
Sbjct: 481  APITLKQAIEGEPKLQAARDEDPIVARAFDIAQKLEGLTRHASTHAAGIVIGDRPLSDLV 540

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT L  ++  L QR + VDL  +P 
Sbjct: 541  PLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRDIHVDLHTLPI 600

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  +Y +L     +G+FQ+ES+GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  Y  
Sbjct: 601  DDAPSYQMLARGDVVGVFQVESAGMRRALIDMRPDRFEDIIALVALYRPGPMANIPTYCA 660

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMGKKI+ 
Sbjct: 661  RKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMGKKIRA 720

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMDKQ+  F+ GA KNG++K  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+MK HY
Sbjct: 721  EMDKQRAIFVEGAVKNGVAKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMKAHY 780

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTLE+ N +K+ +F  +A++  I++  PSVN     F+VG N I+Y+LA +K
Sbjct: 781  PVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVGPNTIFYALAGLK 840

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG    + I+EA  D+PF SL DF +RV+ + +N+RV+E L  AGA DC   +R ++  
Sbjct: 841  GVGMQAVQQIVEARGDRPFTSLADFSARVNPRAINKRVIECLAAAGAFDCLDSNRARVFG 900

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLGF 961
              D I    Q   +  T+   ++F    G  SD   I L +      + R   E   +GF
Sbjct: 901  GADAIVAACQRNHEAATSGQNDMF----GGLSDAPSIILPQLEPWLPAERLRREYDAIGF 956

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVT 1019
            + SGHPLD Y   L+++ ++ + E    ++      ++AA VVS+ +++T+ G+++G + 
Sbjct: 957  FLSGHPLDDYATALKRLRVQSWAEFCKAVKSGATAGKVAATVVSRMERRTKTGNKMGIIG 1016

Query: 1020 FSEPAKEYEANFF 1032
             S+P   +EA  F
Sbjct: 1017 LSDPTGHFEAVLF 1029


>gi|90423933|ref|YP_532303.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisB18]
 gi|90105947|gb|ABD87984.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB18]
          Length = 1185

 Score = 1071 bits (2769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1035 (51%), Positives = 702/1035 (67%), Gaps = 20/1035 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS+YSLL G++ +  + +   AD QPA+A+TDT+N+F ALEFS+K    GIQP
Sbjct: 23   GFVHLHVHSAYSLLRGSIKVAKLCELAKADHQPALALTDTDNMFGALEFSEKMAGYGIQP 82

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC+L +D  D         +  P+   IVLL +   GY+ LI+L SR +L     Q+ 
Sbjct: 83   IVGCELAVDFGDQDPNARNALSAAPS--RIVLLAARERGYRSLIKLNSRAFLETPVNQTP 140

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I L WL     E LI L+GG  GPI  AF  + + +AE R      LFGDRLY+ LQRH
Sbjct: 141  HIKLDWLNG-EAEDLIALSGGPEGPISLAFTADQAGLAEARCDRLAALFGDRLYIELQRH 199

Query: 190  RGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             G D  R  E+ ++ LAY   LPLVATN   F + +DYEAHD L+ +A   +V++ DRP+
Sbjct: 200  -GVDAERRAEAALIDLAYAKGLPLVATNEPYFATNDDYEAHDALLCIAGGRLVAETDRPQ 258

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI-----EKECDD 302
            +TPDH  K R+EM  +F+DLPEAL +TVEIA RC+F  +   PILP F            
Sbjct: 259  LTPDHRFKTRAEMAVLFADLPEALASTVEIAERCAFRPRTRKPILPHFTLGAGTGSHAAA 318

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                E +E+R +A  GL  RL    +AKG   ++YR RL+FEL +I RM+++GYFLIV D
Sbjct: 319  ASSNEADEVRAQAEQGLIKRLQVHGVAKGATEEEYRARLEFELGIITRMQYAGYFLIVGD 378

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK+N IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SMPDFDIDF
Sbjct: 379  FIKWAKENGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSMPDFDIDF 438

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P +
Sbjct: 439  CQDRRGEVIEYVQRRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQN 498

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA PV+L QAI  + + +  R  DP V R   I+Q+LEGL RHASTHAAGIVIGDRPLS+
Sbjct: 499  PAAPVTLKQAIESEPKLQAFRDEDPVVARAFNIAQRLEGLTRHASTHAAGIVIGDRPLSE 558

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT L  ++  L QRGV V L  +
Sbjct: 559  LVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRGVVVSLPTV 618

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD +T+ +L     +G+FQLES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  Y
Sbjct: 619  PLDDPDTFAMLGRGDVVGVFQLESQGMRRALIDMRPDRFEDIIALVALYRPGPMANIPTY 678

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK+G E+   +HP+++ +LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMGKKI
Sbjct: 679  CARKHGDEEPEYLHPILESILKETFGVIIYQEQVMQIAQVMAGYSLGQADLLRRAMGKKI 738

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            + EM+KQ+  FI+G+ ++G+ K  A  IFELLAKFADYGFNKSHAAAYA++SY TA+MK 
Sbjct: 739  RAEMEKQRAGFIAGSVEHGVPKAQADAIFELLAKFADYGFNKSHAAAYALVSYHTAYMKA 798

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMTLE+ N +K+ +F  +A++  I++  PSVN     F+V D  IYY+LAA
Sbjct: 799  HYPVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKLEAPSVNRSGATFEVADGVIYYALAA 858

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +KGVG      I+E      F SL DF ++V  K +N+RV+ESL  AGA D    +R  +
Sbjct: 859  LKGVGAQAVELIVEGRKGGLFSSLADFAAKVSPKAINKRVIESLAAAGAFDGLNPNRAAV 918

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVL 959
                D I    Q   +       ++F    G  +D   I L +      + R   E   +
Sbjct: 919  FGGADAIMAACQRHHEAAAMGQNDMF----GGMADAPTIMLPQLEAWLPAERLRREYDAI 974

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGW 1017
            GF+ SGHPLD Y   L+++ ++ + E    ++      ++AA VVS+ +++T+ G+++G 
Sbjct: 975  GFFLSGHPLDDYATALKRLRVQSWAEFCRAVKSGATAGKVAATVVSRMERRTKTGNKMGI 1034

Query: 1018 VTFSEPAKEYEANFF 1032
            +  S+P   +EA  F
Sbjct: 1035 LGLSDPTGHFEAVLF 1049


>gi|217977860|ref|YP_002362007.1| DNA polymerase III, alpha subunit [Methylocella silvestris BL2]
 gi|217503236|gb|ACK50645.1| DNA polymerase III, alpha subunit [Methylocella silvestris BL2]
          Length = 1152

 Score = 1071 bits (2769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/1036 (51%), Positives = 709/1036 (68%), Gaps = 16/1036 (1%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E    FVHL VHSS+SL EGA+ +  +    AAD  PA+AITD NNLF ALEFS+K    
Sbjct: 7    EAGLGFVHLHVHSSFSLREGAMGIGKLAKLAAADHMPALAITDGNNLFGALEFSEKLAKE 66

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+QPIIG +L +D +D   ++ +G+       SIVL+     GY  L+ LVSR +L  + 
Sbjct: 67   GVQPIIGAELTLDFRDGAAISARGEELGAGRASIVLIAKDEAGYLNLMHLVSRAWLDPEP 126

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 + +  L+   T G+I L+GG +GP+DRAF    S+ A  R     +LF DRLY+ 
Sbjct: 127  GDPPHVPIERLRGR-TGGMIALSGGPAGPLDRAFAARRSEQAFARAAQLAELFPDRLYIE 185

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQRH    +R  E +++ LAY   LPLVA N   F +  DYEAHD L+ +A  TV+    
Sbjct: 186  LQRHNLAAEREAEPRLLDLAYRKSLPLVAANEPYFGTSSDYEAHDALICIAEGTVIGDGA 245

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R +++P+H  K R+EMV++F+DLPEA  NTVEIARRC+F      P+LPRF         
Sbjct: 246  RRQLSPEHRFKTRAEMVALFADLPEASRNTVEIARRCAFRPLTRKPLLPRF---SATGEL 302

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + E + LR++A AGLE R+    +AKG+ A+DYR+RL FEL+VI +MKF GYFLIV+DFI
Sbjct: 303  EAEADALRSEAEAGLEARIEAHGLAKGFTAEDYRKRLAFELDVIVKMKFPGYFLIVSDFI 362

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++AK   IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 363  KYAKSQGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQ 422

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRRDEVI YV+ +YG ++VAQIITFGS  A+  LR+VGR L+MP  QVDRL KL+P +PA
Sbjct: 423  DRRDEVIAYVRRRYGADKVAQIITFGSFLARGVLRNVGRVLEMPLGQVDRLAKLVPQNPA 482

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             PVSL QAI  + R +EA  A+P V ++L+I+Q LEGLY +ASTHAAGIVIGDRPL QLV
Sbjct: 483  APVSLKQAIDSEPRLKEAAEAEPRVAKMLQIAQTLEGLYSNASTHAAGIVIGDRPLEQLV 542

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+YRD +SD+P TQFNMKW+E AGL+KFDFLGLKTLT L   +  L +RG+++++  IP 
Sbjct: 543  PLYRDPKSDMPATQFNMKWVEPAGLVKFDFLGLKTLTTLSTCVKLLRRRGIEIEIDKIPL 602

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +TY +L    T+G+FQLES+GMR+AL  M  D  EDIIALV+LYRPGP+ NI  Y  
Sbjct: 603  DDSKTYAMLGRGETIGVFQLESAGMRRALVDMHADRFEDIIALVALYRPGPMANIPRYCA 662

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             K G+E+   IHP I+ +LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK 
Sbjct: 663  VKAGEEEADYIHPKIEGVLKETFGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGKKIKA 722

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMD Q++RF+ GA  NG++K  A  IF+LLAKFADYGFNKSHAAAYA+I+YQTAW K +Y
Sbjct: 723  EMDAQRDRFLRGAIDNGLAKAKANEIFDLLAKFADYGFNKSHAAAYALIAYQTAWFKANY 782

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYS 838
            P+EFLAASMTL+  N +K+ +F  +AR+ N  + PPS+     DF+V     G+ +I Y+
Sbjct: 783  PLEFLAASMTLDKANTDKLAEFSNEARRLNGAVEPPSIQRSGADFEVCANDAGELQIRYA 842

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L AIKGVG   A  ++ A   KPF    DF +R+D + +N+R+LESLV AGA D     R
Sbjct: 843  LGAIKGVGQGHAEALVAARNSKPFRDFADFSARIDPRAINKRMLESLVAAGAFDEMEPDR 902

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             ++  +++ I   A   ++ R      +F        D++ L K +    + R   E   
Sbjct: 903  ARVFAAIETILASAHRRDEERRAGQSALFG---AGAEDRMPLPKVAPWTLAERLRREFDS 959

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIG 1016
            +GF+ SGHPLD Y  I+ ++ ++ + E    ++      RLAA V+ +Q+++T+ GS++G
Sbjct: 960  VGFFLSGHPLDAYATIMSRLRVQRWTEFSRAVKLGATGGRLAATVLDRQERRTKSGSKMG 1019

Query: 1017 WVTFSEPAKEYEANFF 1032
             V  S+P+ +YEA  F
Sbjct: 1020 IVQLSDPSGQYEAILF 1035


>gi|148255875|ref|YP_001240460.1| DNA polymerase III subunit alpha [Bradyrhizobium sp. BTAi1]
 gi|146408048|gb|ABQ36554.1| DNA polymerase III, alpha subunit [Bradyrhizobium sp. BTAi1]
          Length = 1173

 Score = 1070 bits (2768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1039 (51%), Positives = 715/1039 (68%), Gaps = 22/1039 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VHS+YSLL+G++ +  + +   AD+QPA+A+TDT+N+F ALEFS K    GI
Sbjct: 3    SAGFVHLHVHSAYSLLKGSIKIGKLGELAKADRQPALALTDTDNMFGALEFSDKMAGYGI 62

Query: 68   QPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            QPI GC+L ID  D +    N      P+   IVLL +  EGY+ L+ L SR +L     
Sbjct: 63   QPIAGCELAIDFGDMDPNARNAAAVAQPS--RIVLLAAREEGYRHLMRLNSRAFLDTPTH 120

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q+  I   WLQE G +GLI LTGG  GPI  A   + + +A +R      LFGDRLY+ L
Sbjct: 121  QAPHIKFEWLQE-GVDGLIALTGGPDGPISLAIQHDMAALAGQRCERLASLFGDRLYIEL 179

Query: 187  QRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            QRH G DR R  E  ++ +AY   LPLVATN   F + +DYEAHD L+ +A   +++  D
Sbjct: 180  QRH-GTDRERRVEGGLIDIAYGKGLPLVATNEPYFATADDYEAHDALLCIAGGHLIADTD 238

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R ++TPDH  K R+EM  +F+D+PEAL +TVEIA RCS+  +   PILP F         
Sbjct: 239  RVQLTPDHRFKTRAEMAVLFADIPEALASTVEIAERCSYRPRTRKPILPFFTVGAGSGAD 298

Query: 305  KEEENE-----LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              +        L+ +A  GL  RL    +A G   +DY++RL FEL+VI RMK++GYFLI
Sbjct: 299  AVDAASAEAAELKRQAEEGLARRLKVHGMAPGMTEEDYQKRLAFELDVITRMKYAGYFLI 358

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V+DFI+WAK + IPVGPGRGSGAGS+ A+ LTITD+DP+RF+LLFERFLNP+R+SMPDFD
Sbjct: 359  VSDFIKWAKAHGIPVGPGRGSGAGSLVAWVLTITDLDPMRFALLFERFLNPERVSMPDFD 418

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQDRR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+
Sbjct: 419  IDFCQDRRGEVISYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLV 478

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P +PA PV+L A I  + + +  R  DP V R  +I+ +LEGL RHASTHAAGIVIGDRP
Sbjct: 479  PQNPAAPVTLAAAIEGEPKLQAFRDEDPVVARAFDIAMRLEGLTRHASTHAAGIVIGDRP 538

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            LS+LVPMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QR V VDL
Sbjct: 539  LSELVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRDVHVDL 598

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  +Y +L     +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI
Sbjct: 599  ATLPIDDAASYQMLARGDVVGVFQVESQGMRRALIDMRPDRFEDIIALVALYRPGPMANI 658

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  RK+G+E+   +HP+++P+LKET GVIIYQEQVMQ+AQ +SGYSL EAD+LRRAMG
Sbjct: 659  PTYCARKHGEEEAEYLHPILEPILKETFGVIIYQEQVMQVAQQMSGYSLGEADLLRRAMG 718

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KKI+ EMDKQ+ RF+ GA KNG+SK  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+
Sbjct: 719  KKIRAEMDKQRVRFVEGAVKNGVSKDQADTIFDLLAKFADYGFNKSHAAAYALVSYHTAY 778

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            MK HYPVEF+AASMTL+++N +K+ +F  +A++  I++ PPS+N     F+V  N I+Y+
Sbjct: 779  MKAHYPVEFIAASMTLDLNNTDKLSEFRAEAQRLGIKVEPPSINRSGPTFEVSGNTIFYA 838

Query: 839  LAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            LAA+KGVG      I+EA +   PF SL DF SRV+ + +N+R++E+L  AGA D    +
Sbjct: 839  LAALKGVGPQAIEMIVEARNKGGPFTSLADFASRVNPRAINKRIIETLAAAGAFDVLDKN 898

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN--SSVRFENE 955
            R ++    D I    Q   +  T+   ++F    G  +D   +   +VEN   + R   E
Sbjct: 899  RARVFAGADAIVAACQRAHEAATSGQNDMF----GNAADAPAIILPNVENWLPAERLRRE 954

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGS 1013
               +GF+ SGHPLD Y   L+++ ++ + E    ++      ++AA VVS+ +++T+ G+
Sbjct: 955  YDAIGFFLSGHPLDDYAAALKRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGN 1014

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            ++G +  S+P   +EA  F
Sbjct: 1015 KMGIMGLSDPTGHFEAVLF 1033


>gi|75676051|ref|YP_318472.1| DNA polymerase III subunit alpha [Nitrobacter winogradskyi Nb-255]
 gi|74420921|gb|ABA05120.1| DNA polymerase III, alpha subunit [Nitrobacter winogradskyi Nb-255]
          Length = 1168

 Score = 1066 bits (2756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/1043 (51%), Positives = 712/1043 (68%), Gaps = 21/1043 (2%)

Query: 1    LTQYLEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
            +TQ    +P+ FVHL VHS+YSLL+G++ +  + +   AD QPA+A+TDT+N+F ALEFS
Sbjct: 1    MTQKTLAAPAGFVHLHVHSAYSLLKGSIKIQKLAELARADHQPALALTDTDNMFGALEFS 60

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
             K    GIQPI+GC+L +D  D          P      IVLL +   GY+ L+ L SR 
Sbjct: 61   DKVAGLGIQPIVGCELAVDFTDQDANARNALPP----ARIVLLATREAGYRNLMRLNSRA 116

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +L      S  +   WL++   EGLI LTGG  GP+ +AF  +   +A  R      +FG
Sbjct: 117  FLETPEHCSPHVNWEWLRD-ENEGLIALTGGPEGPVAQAFNADQPALATARCDRLAGIFG 175

Query: 180  DRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            DRLYV LQRH G D+ R  E  ++ LAY   LPLVATN   F + +DYEAHD L+ +A  
Sbjct: 176  DRLYVELQRH-GLDKERRVEGALIDLAYAKGLPLVATNEPYFATSDDYEAHDALLCIAGG 234

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI- 296
             +V++ DR ++TPDH  K R+EM  +F+D+PEAL +T+EIA RC+F  +   PILP F  
Sbjct: 235  RLVAETDREQLTPDHRFKTRAEMAVLFADIPEALSSTMEIAERCAFRPRTRKPILPHFTV 294

Query: 297  --EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
              +    D + +E  ELR +A  GL  RLA   ++ G   QDY  RLDFEL+VI RM ++
Sbjct: 295  ASDAAAADGKNDEAAELRRQAQEGLAKRLAVHGVSTGMTEQDYSARLDFELDVITRMNYA 354

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIVADFI+ AK   IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+S
Sbjct: 355  GYFLIVADFIKHAKSKGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERIS 414

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFDIDFCQ+RR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+
Sbjct: 415  MPDFDIDFCQERRGEVIDYVQKRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDK 474

Query: 475  LCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            L KL+P +PA PVSL QAI  + + +  R  DP V R  +I+Q+LEGL RHASTHAAGIV
Sbjct: 475  LTKLVPQNPAAPVSLKQAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIV 534

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            IGDRPLS+LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QRG
Sbjct: 535  IGDRPLSELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRG 594

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            + VDL+ +P DD  +Y +LT    +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPG
Sbjct: 595  IDVDLATLPLDDAASYQMLTQGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPG 654

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+ NI  Y  RK+G+E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+L
Sbjct: 655  PMANIPTYCARKHGEEEAEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLL 714

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKKI+ EM+KQ+  F++G+  NG+ +  A  IFELLAKFADYGFNKSHAAAYA++S
Sbjct: 715  RRAMGKKIRSEMEKQRAIFVAGSVNNGVPRGQAETIFELLAKFADYGFNKSHAAAYALVS 774

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA+MK H+PVEFLAASMTL+M N +K+ +F  +A++  I++  PS+N     F+V + 
Sbjct: 775  YQTAYMKAHFPVEFLAASMTLDMSNTDKLSEFRAEAQRLGIKVEAPSINRSGATFEVKEG 834

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I Y+LAA+KGVG      I+EA     F SL DF +RV  + +N+RV+ESL  AGA + 
Sbjct: 835  VICYALAALKGVGAHAVEQIVEARKAGMFTSLADFAARVPPRAINKRVIESLAAAGAFEA 894

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVENSSVR 951
               +R ++    + I    Q   +       ++F    G  +D   I L +      + R
Sbjct: 895  LEPNRARVFAGAEAILAACQRSHEATMIGQNDMF----GGLADAPDIMLPRAEPWLPADR 950

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKT 1009
               E   +GF+ SGHPLD Y   L+++ ++ + E    ++      ++AA VVS+ +++T
Sbjct: 951  LRREYEAVGFFLSGHPLDDYATALKRLRVQSWVEFSRAVKSGATAGKVAATVVSRMERRT 1010

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
            + G+++G +  S+P+  +EA  F
Sbjct: 1011 KTGNKMGIIGLSDPSGHFEAVLF 1033


>gi|154253636|ref|YP_001414460.1| DNA polymerase III subunit alpha [Parvibaculum lavamentivorans DS-1]
 gi|154157586|gb|ABS64803.1| DNA polymerase III, alpha subunit [Parvibaculum lavamentivorans DS-1]
          Length = 1139

 Score = 1065 bits (2755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/1033 (52%), Positives = 704/1033 (68%), Gaps = 20/1033 (1%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            +  P F+HL++HS+YSLLEGA+ + +I     A+  PAIA+TDT NLF ALEFS+     
Sbjct: 3    DSPPKFIHLRLHSAYSLLEGAIRIKDIPKLCKANGMPAIALTDTANLFGALEFSETLAKE 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLD 123
            GIQPI GC L + +  + + T   + P    PS  + LL     GY+ L++L S  +L  
Sbjct: 63   GIQPITGCTLPVLLDTSDEPT---RGPIRREPSGNLALLAKDERGYENLMKLSSLAFLGP 119

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
               +   + +  ++E   EGLI LTGG  G ++R         A + LL  K++FGDRLY
Sbjct: 120  DAAEPAHVTMEKVEEF-QEGLICLTGGPDGLVNRLIEAGQPDAAAELLLRLKRIFGDRLY 178

Query: 184  VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            V LQRH    ++  E  +++LAY HELPLVATN   F  E +YEAHD L+ +A    V Q
Sbjct: 179  VELQRHDLPREQIVEGPLIELAYKHELPLVATNEPYFTRESEYEAHDALICIAAGAYVVQ 238

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             DR R+TP H  K++ EM ++F+DLPEA+ENTVEIARRC++  Q   PILP+F       
Sbjct: 239  SDRRRLTPQHRFKSQDEMAALFADLPEAIENTVEIARRCAYRPQTRNPILPKFAAGTS-- 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                E +ELR +A  GL +RLA   A+A     ++YR RL+FEL+VI +M F GYFLIVA
Sbjct: 297  ----EADELRRQAEEGLTMRLATLEAVAP---EEEYRARLNFELDVIIKMDFPGYFLIVA 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK   IPVGPGRGSGAGSV A+ALTITD+DPLRF LLFERFLNP+R+SMPDFDID
Sbjct: 350  DFIKWAKGQGIPVGPGRGSGAGSVVAWALTITDLDPLRFGLLFERFLNPERVSMPDFDID 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRRDEVIRYVQ +YG ++VAQIITFG LQA+A LRDVGR LQMPY QVDRLCKL+PN
Sbjct: 410  FCQDRRDEVIRYVQARYGEDKVAQIITFGKLQARAVLRDVGRVLQMPYGQVDRLCKLVPN 469

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA PV+L +AI  + R +E + AD +V +LLEI Q LEGLYRHASTHAAG+VIGDRPL 
Sbjct: 470  NPAAPVTLPEAIKGEPRLQEEQRADETVAKLLEIGQSLEGLYRHASTHAAGVVIGDRPLD 529

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L +++  LA+R +++DL  
Sbjct: 530  ELVPLYRDPRSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDRAVKLLARRDIQIDLLN 589

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P  D +T+ +L    T+G+FQLESSGMR  L  ++ D  EDIIALV+LYRPGP+DNI  
Sbjct: 590  LPLADEKTFAMLGRGETIGVFQLESSGMRDVLRKLEADRFEDIIALVALYRPGPMDNIPS 649

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  RK+G EK   +HPL++P+LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 650  YVKRKHGTEKPDYLHPLLEPVLKETHGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGKK 709

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            IK EM+ QKERF++GA    I K  A +IFEL+ KFA YGFNKSHAAAYA+++YQTAW+K
Sbjct: 710  IKAEMEAQKERFVTGAVAKQIDKAQAASIFELVDKFAGYGFNKSHAAAYALVAYQTAWLK 769

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             ++PVEFLAASM+L++ N +K+  F Q+A +  +++  P +N     F V D  I Y+LA
Sbjct: 770  ANHPVEFLAASMSLDLGNTDKLGLFKQEAERLGLKVRRPCINRSEGLFGVADGEILYALA 829

Query: 841  AIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AIK VG     HI+E   +  PF  L DF  R++ + +N+R  E+L  AGA D    +R 
Sbjct: 830  AIKNVGLQAMEHIVEVRREGGPFRDLFDFARRINPRLINKRTFENLARAGAFDALNPNRA 889

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            Q+L + D +   A    + R +K   +F  E G  +    L          R   E   +
Sbjct: 890  QVLAAADLLLGTANVAAQERESKQVGLFGEESGVAAAHPALPAIEPWLPMDRLTEEFNAV 949

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GFY SGHPLD Y+  L++ G+  Y E +        ++A  V +KQ++K++KG+   +++
Sbjct: 950  GFYLSGHPLDDYRTALQRAGVVTYAELLGKT-STAAKIAGTVTAKQERKSKKGNPFAFLS 1008

Query: 1020 FSEPAKEYEANFF 1032
             S+P  ++E   F
Sbjct: 1009 LSDPTGQFEIVVF 1021


>gi|85716997|ref|ZP_01047960.1| DNA polymerase III subunit alpha [Nitrobacter sp. Nb-311A]
 gi|85696199|gb|EAQ34094.1| DNA polymerase III subunit alpha [Nitrobacter sp. Nb-311A]
          Length = 1167

 Score = 1064 bits (2752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/1033 (51%), Positives = 712/1033 (68%), Gaps = 20/1033 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS+YSLL+G++ +  + +   AD QPA+A+TDT+N+F ALEFS K    GIQP
Sbjct: 11   GFVHLHVHSAYSLLKGSIKIQKLAELARADHQPALALTDTDNMFGALEFSDKVAGYGIQP 70

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC+L +D  D        +   P +  +VLL +   GY+ L+ L SR +L      S 
Sbjct: 71   IVGCELAVDFGDQ---DANARNAIP-LARVVLLATREAGYRNLMRLNSRAFLETPEHCSP 126

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +   WL++   EGLI LTGG  GP+  AF  + S +A  R      +FGDRLYV LQRH
Sbjct: 127  HVSWEWLRD-ENEGLIALTGGPDGPVAMAFNADHSALATARCDQLAMIFGDRLYVELQRH 185

Query: 190  RGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             G D+ R  E  ++ LAY   LPLVATN   F + +DYEAHD L+ +A   +V++ +R +
Sbjct: 186  -GLDKERRVEGALIDLAYAKGLPLVATNEPYFATSDDYEAHDALLCIAGGRLVAETEREQ 244

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---EKECDDIQ 304
            +TPDH  K R+EM  +F+D+PEAL +T+EIA RC+F  +   PILPRF    +    D +
Sbjct: 245  LTPDHRFKTRAEMAVLFADIPEALASTIEIAERCAFRPRTRKPILPRFTVASDAGAADGK 304

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             +E  ELR +A  GL  RLA   ++ G   +DY +RL FEL+VI RM ++GYFLIVADFI
Sbjct: 305  NDEAAELRRQAEEGLAKRLAVHGVSTGMTEEDYGKRLGFELDVITRMNYAGYFLIVADFI 364

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++AK   IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 365  KYAKSKGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQ 424

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P +PA
Sbjct: 425  ERRGEVIDYVQKRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA 484

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             PVSL QAI  + + +  R  DP V R  +I+Q+LEGL RHASTHAAGIVIGDRPLS+LV
Sbjct: 485  APVSLKQAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELV 544

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QR + VDL+ +P 
Sbjct: 545  PLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRNIHVDLATLPL 604

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  +Y +LT    +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  Y  
Sbjct: 605  DDAASYQMLTQGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCA 664

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMGKKI+ 
Sbjct: 665  RKHGEEESEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMGKKIRA 724

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM+KQ+  F++G+ K+G+ +  A  IFELLAKFADYGFNKSHAAAYA++SYQTA+MK HY
Sbjct: 725  EMEKQRAIFVAGSVKSGVPQGQAETIFELLAKFADYGFNKSHAAAYALVSYQTAYMKAHY 784

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTL+M N +K+ +F  +A++  I++  PSVN     F+V +  I Y+LAA+K
Sbjct: 785  PVEFLAASMTLDMSNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVSEGVICYALAALK 844

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG+     I+EA  +  F SL DF +RV  + +N+RV+ESL  AGA D    +R ++  
Sbjct: 845  GVGSHAVELIVEARKNGLFTSLADFAARVPPRAINKRVIESLAAAGAFDALEPNRARVFA 904

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVENSSVRFENEQRVLGF 961
              + I    Q   +  T    ++F    G  +D   I L +      + R   E   +GF
Sbjct: 905  GAEAILAACQRSHEAMTLGQNDMF----GGMADAPDILLPRVEPWLPADRLRREYEAVGF 960

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVT 1019
            + SGHPLD Y   L+++ ++ + E    ++      ++AA VVS+ +++T+ G+++G + 
Sbjct: 961  FLSGHPLDDYVTALKRLRVQSWVEFSRAVKAGATAGKVAATVVSRTERRTKTGNKMGIIG 1020

Query: 1020 FSEPAKEYEANFF 1032
             S+P   +EA  F
Sbjct: 1021 LSDPTGHFEAVLF 1033


>gi|91977328|ref|YP_569987.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisB5]
 gi|91683784|gb|ABE40086.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB5]
          Length = 1151

 Score = 1061 bits (2745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/1033 (51%), Positives = 714/1033 (69%), Gaps = 18/1033 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS+YSLL+G++ +  + +   AD QPA+A+TDT+N+F ALEFS K   +GIQP
Sbjct: 5    GFVHLHVHSAYSLLKGSMKIARLAELAKADHQPALALTDTDNMFGALEFSDKLAGSGIQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +L ID  D  +  N   T       IVLL +   GY+ L+ L SR +L     Q  
Sbjct: 65   IVGLELGIDFGD--QDPNSRNTAVAAPSRIVLLATRERGYRSLMRLNSRAFLETPVNQPP 122

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL +  TE +I LTGG  GPI  A   + + +   R     + FGDRLYV LQRH
Sbjct: 123  HIKFDWL-DGETEDVIALTGGPDGPISLAMLTDPA-LGRLRCERLAQAFGDRLYVELQRH 180

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++R  E+ ++ +AY   LPLVATN   F + +D+EAHD L+ +A   ++++ DR ++
Sbjct: 181  NTDFERRAEAGLIDVAYDMGLPLVATNEPHFATSDDFEAHDALLCIASGKLIAETDRVQL 240

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQKEE 307
            TPDH  K R+EM  +F+DLPEAL +TVEIA+RC++      PILP F +    +D ++  
Sbjct: 241  TPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVNDAEEAA 300

Query: 308  ENE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              E   LR +A  GL  R+    +++G   +DYR+RL FEL+VI RMK++GYFLIV+DFI
Sbjct: 301  AAEAAELRRQAEQGLADRMRIHGLSQGMSEEDYRKRLAFELDVITRMKYAGYFLIVSDFI 360

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 361  KWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQ 420

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P +PA
Sbjct: 421  DRRGEVIEYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA 480

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             PVSL QAI  + + +  R  DP V R  +I+QKLEGL RHASTHAAGIVIGDRPLS LV
Sbjct: 481  APVSLKQAIESEPKLQAFRDEDPVVARAFDIAQKLEGLTRHASTHAAGIVIGDRPLSDLV 540

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QR + +DL+ +  
Sbjct: 541  PMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRNIHIDLATLGI 600

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D  +Y +L     +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  Y  
Sbjct: 601  EDAPSYQMLARGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCA 660

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMGKKI+ 
Sbjct: 661  RKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGKKIRA 720

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM+KQ+  F+ GA++NG+ K  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+MK HY
Sbjct: 721  EMEKQRAIFVEGATRNGVPKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMKAHY 780

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+AASMTL+++N +K+ +F  +A++  I++  PSVN     F+VG+N IYY+LA +K
Sbjct: 781  PVEFIAASMTLDLNNTDKLSEFRAEAQRLGIKVEAPSVNRSGPTFEVGENTIYYALAGLK 840

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG    + I+EA  DKPF SL DF +RV+ + +N+RV+ESL  AGA DC   +R ++  
Sbjct: 841  GVGQHAVQMIVEARGDKPFSSLADFAARVNPRAINKRVIESLAAAGAFDCLDPNRARVFA 900

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLGF 961
              D I    Q   +  T+   ++F    G  +D   I L +      + R   E   +GF
Sbjct: 901  GADAIIAACQRSHEAATSGQNDMF----GGLADAPSIVLPQVEPWLPAERLRREYDAIGF 956

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVT 1019
            + SGHPLD Y   L+++ ++ + +    ++      ++AA VVS+ +++T+ G+++G + 
Sbjct: 957  FLSGHPLDDYATALKRLRVQSWSDFCKAVKSGATAGKVAATVVSRMERRTKTGNKMGIMG 1016

Query: 1020 FSEPAKEYEANFF 1032
             S+P   +EA  F
Sbjct: 1017 LSDPTGHFEAVLF 1029


>gi|92117240|ref|YP_576969.1| DNA polymerase III subunit alpha [Nitrobacter hamburgensis X14]
 gi|91800134|gb|ABE62509.1| DNA polymerase III, alpha subunit [Nitrobacter hamburgensis X14]
          Length = 1168

 Score = 1061 bits (2745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/1033 (51%), Positives = 706/1033 (68%), Gaps = 20/1033 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS+YSLL+G++ +  + +   AD QPA+A+TDT+N+F ALEFS K    GIQP
Sbjct: 11   GFVHLHVHSAYSLLKGSIKIQKLAELAKADHQPALALTDTDNMFGALEFSDKVAGYGIQP 70

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC+L +D  D      +   PF     IVLL +   GY+ L+ L SR +L     Q+ 
Sbjct: 71   IVGCELAVDFDDQ-DPNARSALPFA---RIVLLATREAGYRNLMRLNSRAFLESALHQTP 126

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL++   EGLI LTGG  GP+  AF  + S +A  R      +FGDRLYV LQRH
Sbjct: 127  HIKSGWLRD-ENEGLIALTGGPDGPVALAFNADHSALAIARCDQLAGVFGDRLYVELQRH 185

Query: 190  RGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             G D+ R  E  ++ LAY   LPLVATN   F + +DYEAHD L+ +A   +V++ DR +
Sbjct: 186  -GLDKERRVEGALIDLAYAKGLPLVATNEPYFAASDDYEAHDALLCIAGGRLVAETDRDQ 244

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---EKECDDIQ 304
            +TPDH  K R+EM  +F+D+PEAL +T+EIA RC+F      PILP F         D +
Sbjct: 245  LTPDHRFKTRAEMAVLFADIPEALSSTIEIAERCAFRPLTRKPILPHFAVGAGANAADAK 304

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             +E  ELR +A  GL  RLA   +++G    DY  RL FEL+VI RM ++GYFLIVADFI
Sbjct: 305  SDEVAELRRQAEEGLANRLAVHGLSQGMTEDDYSARLSFELDVITRMNYAGYFLIVADFI 364

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            + AK   IPVGPGRGSGAGS+ AY LTITD+DP+RF LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 365  KHAKSEGIPVGPGRGSGAGSLVAYVLTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQ 424

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P +PA
Sbjct: 425  ERRGEVIDYVQKRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA 484

Query: 485  HPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             P++L A IA + + +  R  DP V R  +I+Q+LEGL RHASTHAAGIVIGDRPLS+LV
Sbjct: 485  APITLAAAIASEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELV 544

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QR V +DL+ +P 
Sbjct: 545  PLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRNVHIDLATLPL 604

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD E+Y +LT    +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  Y  
Sbjct: 605  DDAESYQMLTRGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCA 664

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMGKKI+ 
Sbjct: 665  RKHGEEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMGKKIRA 724

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM+KQ   F++G+ KNG+ K  A  IFELLAKFADYGFNKSHAAAYA++SYQTA+MK HY
Sbjct: 725  EMEKQHAIFVAGSVKNGVPKGQAETIFELLAKFADYGFNKSHAAAYALVSYQTAYMKAHY 784

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P+EFLAASMTL+M N +K+ +F  +A++  I++  PS+N     F+V    I Y+LAA+K
Sbjct: 785  PIEFLAASMTLDMSNTDKLSEFRSEAQRLEIKVEAPSINRSGATFEVSGGVICYALAALK 844

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG      I+EA  +  F SL DF +RV  + +N+RV+ESL  AGA D F  +R ++  
Sbjct: 845  GVGAQAVEQIVEARKNGLFTSLADFAARVPPRAVNKRVIESLAAAGAFDAFEPNRARVFA 904

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLGF 961
              + I    Q   +       ++F    G  +D   I L +      S R + E   +GF
Sbjct: 905  GAEAILAACQRSHEAAMLGQNDMF----GGMADAPAIMLPQAEPWLPSDRLKREYDAVGF 960

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVT 1019
            + SGHPLD Y   L+++ ++ + E    ++      R+AA VVS+ +++T+ G+++G + 
Sbjct: 961  FLSGHPLDDYATALKRLRVQSWAEFSRAVKTGATAGRVAATVVSRMERRTKTGNKMGIIG 1020

Query: 1020 FSEPAKEYEANFF 1032
             S+P   +EA  F
Sbjct: 1021 LSDPTGHFEAVLF 1033


>gi|115524557|ref|YP_781468.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisA53]
 gi|115518504|gb|ABJ06488.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisA53]
          Length = 1165

 Score = 1060 bits (2742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/1032 (52%), Positives = 697/1032 (67%), Gaps = 16/1032 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS+YSLL+G++ +  + D   AD QPA+A+TDT+N+F ALEFS K   AGIQP
Sbjct: 5    GFVHLHVHSAYSLLKGSIKIGKLADLAKADHQPALALTDTDNMFGALEFSDKMAGAGIQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I+GC+L ID  D   +    +      PS IVLL S   GY+ L++L SR +L     Q 
Sbjct: 65   IVGCELAIDFGD---VDPTARNALAAGPSRIVLLASRERGYRSLMKLNSRAFLETPVNQV 121

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I L WL +   E LI L+GG  GPI  A   +   +AE R      LFGDRLY+ LQR
Sbjct: 122  PHIKLDWLLD-EAEDLIALSGGPDGPISLAIAADQQALAETRCERLASLFGDRLYIELQR 180

Query: 189  HRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H G D  R  E  ++ LAY   LPLVATN   F S +DYEAHD L+ +A   ++++ DR 
Sbjct: 181  H-GVDAERRVEPALIDLAYAKGLPLVATNEPYFASTDDYEAHDALLCIASGKLIAETDRV 239

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD---DI 303
            ++TPDH  K R+EM  +F+DLPEAL +TVEIA RC+F  +   PILP F         D 
Sbjct: 240  QLTPDHRFKTRAEMAVLFADLPEALASTVEIAERCAFRPKTRKPILPFFTVGAGTGDTDA 299

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E  ELR +A  GL  RL    +A+G   +DYR RL FEL+VI RMK++GYFLIV+DF
Sbjct: 300  ASLEAEELRVQAERGLAHRLEVHGLAQGVSEEDYRARLAFELDVITRMKYAGYFLIVSDF 359

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK+  IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SMPDFDIDFC
Sbjct: 360  IKWAKQQGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSMPDFDIDFC 419

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P +P
Sbjct: 420  QDRRGEVITYVQERYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNP 479

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A PVSL QAI  + + +  R  DP V R  +I+Q+LEGL RHASTHAAGIVIGDRPLS+L
Sbjct: 480  AAPVSLKQAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSEL 539

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QRGV V L  +P
Sbjct: 540  VPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRGVHVALPTLP 599

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +T+ +L     +G+FQLES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  Y 
Sbjct: 600  LDDPDTFTMLARGDVVGVFQLESQGMRRALIDMRPDRFEDIIALVALYRPGPMANIPTYC 659

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMGKKI+
Sbjct: 660  ARKHGDEEPEYLHPILEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGKKIR 719

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EM+KQ+  F+ GA KNG+ K  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+MK H
Sbjct: 720  AEMEKQRAIFVDGAMKNGVPKGQADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMKAH 779

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YPVEFLAASMTLE+ N +K+ +F  +A++  I++  PSVN     F+V D  I+Y+LA +
Sbjct: 780  YPVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVADGTIFYALAGL 839

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KGVG      I+ A     F SL DF ++V+ + +N+RV+E L  AGA D    +R  + 
Sbjct: 840  KGVGQQAVEQIVAARQGGAFTSLADFAAKVNPRAINKRVIECLAAAGAFDQINPNRAAVS 899

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
               + I    Q   + +     ++F       S  I L        + R   E   +GF+
Sbjct: 900  GGAEAILAACQRHHEAQVVGQNDMFGGSADAPS--IMLPPLEAWLPAERLRREYDAIGFF 957

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTF 1020
             SGHPLD Y   L+++ ++ + E    ++      ++AA VVS+ +++T+ G+++G    
Sbjct: 958  LSGHPLDDYAVALKRLRVQSWAEFCRAVKSGATAGKVAATVVSRMERRTKTGNKMGIFGL 1017

Query: 1021 SEPAKEYEANFF 1032
            S+    +EA  F
Sbjct: 1018 SDATGHFEAVLF 1029


>gi|299135003|ref|ZP_07028194.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2]
 gi|298589980|gb|EFI50184.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2]
          Length = 1135

 Score = 1058 bits (2737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/1003 (52%), Positives = 696/1003 (69%), Gaps = 14/1003 (1%)

Query: 38   ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
            AD QPA+A+TD +N+F ALEFS+K    GIQPIIGC L +D  D        +   P   
Sbjct: 12   ADHQPALALTDRDNMFGALEFSEKLAGVGIQPIIGCALAVDFGDVDPNARNAQALGPA-- 69

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             IV+L ++ EGY+ L+ L SR +L   G+Q   I   WL++  T GLI LTGG  GP+ +
Sbjct: 70   RIVMLAASQEGYRSLMRLNSRAFLDMPGQQIPHIKAEWLKD-DTSGLIALTGGPEGPVSQ 128

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATN 215
            A      ++A +R+     LFGDRLY+ LQRH G D  R  ES ++ +AY   LPLVATN
Sbjct: 129  ALTAEQPELALQRVEKLVGLFGDRLYIELQRH-GLDSERRVESALIDIAYGKGLPLVATN 187

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTV 275
               F + +DYE+HD L+ +A   ++++ +R  +TPDH  K R+EM  +F+DLPEAL +TV
Sbjct: 188  EPYFATADDYESHDALLCIAGGRLIAETERAHLTPDHRFKTRAEMAVLFADLPEALASTV 247

Query: 276  EIARRCSFILQVHAPILPRFI--EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
            EIA+RCSF  +   PILP F       +D    E  EL+ +A  GL  R+ +  +A+G  
Sbjct: 248  EIAQRCSFRPKTRKPILPHFTVGSGHHEDPSAAEAAELQRQAQEGLAHRIEKHGLAEGQT 307

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
             +DY  RL FEL+VI RMK+ GYFLIV+DFI+WAK   IPVGPGRGSGAGS+ AYALTIT
Sbjct: 308  EEDYYNRLAFELDVIKRMKYPGYFLIVSDFIKWAKAQGIPVGPGRGSGAGSLVAYALTIT 367

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            D+DPLRF LLFERFLNP+R+SMPDFDIDFCQDRR EVI YVQ +YG ++V QIITFG+LQ
Sbjct: 368  DLDPLRFGLLFERFLNPERVSMPDFDIDFCQDRRGEVIHYVQERYGRDQVGQIITFGTLQ 427

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLL 512
            A+  LRDVGR LQMPY QVD+L KL+P +PA PV+L A IA + + +  R  DP V R  
Sbjct: 428  ARGVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPVTLAAAIAGEPKLQAFRDEDPVVARAF 487

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            +I+Q+LEGL RHASTHAAGIVIGDRPLS+LVPMYRD +SD+PVTQFNMKW+E AGL+KFD
Sbjct: 488  DIAQRLEGLTRHASTHAAGIVIGDRPLSELVPMYRDPKSDMPVTQFNMKWVEPAGLVKFD 547

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            FLGLKTLT+L  ++  L QR V VDL+ +P DD ETY +LT    +G+FQ+ES GMR+AL
Sbjct: 548  FLGLKTLTVLDVAVKLLKQRNVHVDLAHLPLDDKETYEMLTRGDVVGVFQVESQGMRRAL 607

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
              M+PD  EDIIALV+LYRPGP+ NI  Y  RK+G E+   +HP+++P+LKET GVIIYQ
Sbjct: 608  VDMRPDRFEDIIALVALYRPGPMANIPTYCARKHGDEEPEYLHPVLEPILKETFGVIIYQ 667

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQIAQ+++GYSL EAD+LRRAMGKKI+ EM+KQ+ RF+SG+ ++ I+K  A  IFEL
Sbjct: 668  EQVMQIAQVMAGYSLGEADLLRRAMGKKIRAEMEKQRVRFVSGSVEHSITKGQAEQIFEL 727

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            LAKFADYGFNKSHAAAYA++SYQTA+MK HYPVEF+AASMTL+  N +K+ +F  +A++ 
Sbjct: 728  LAKFADYGFNKSHAAAYALVSYQTAFMKAHYPVEFIAASMTLDTGNTDKLSEFRAEAQRL 787

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
             I++ PPS+N     F VG N I+YSLAA+KGVGT     I+EA  +  PF SL DF +R
Sbjct: 788  GIKVEPPSINRSEGTFTVGGNTIFYSLAALKGVGTHAVDMIVEARKNGGPFTSLADFAAR 847

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V  + +N+RVLESL  AGA D F  +R  +    D I    Q      T    ++F  + 
Sbjct: 848  VPPRAINKRVLESLAAAGAFDEFNPNRAAVFAGADAILAACQRSHDAVTLGQSDMFGSQS 907

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
            G  +  + L        + R + E   +GF+ SGHPLD Y+ +L+++ ++ + E    ++
Sbjct: 908  G--APTLILPNVEPWLPAERLQREYGAVGFFLSGHPLDDYRVVLQRLNVQSWAEFSNAVK 965

Query: 992  GNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                  ++AA VVS+ +++T+ G+++G +  S+P   +EA  F
Sbjct: 966  NGRTAGKVAATVVSRMERRTKTGNKMGIIGLSDPTGHFEAVLF 1008


>gi|86749719|ref|YP_486215.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris HaA2]
 gi|86572747|gb|ABD07304.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris HaA2]
          Length = 1151

 Score = 1058 bits (2735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/1033 (50%), Positives = 713/1033 (69%), Gaps = 18/1033 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS+YSLL+G++ +  + D   AD QPA+A+TDT+N+F ALEFS K   +GIQP
Sbjct: 5    GFVHLHVHSAYSLLKGSMKIARLADLAKADHQPALALTDTDNMFGALEFSDKLAGSGIQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +L ID  D    +       P    +VLL +   GY+ L+ L SR +L     Q  
Sbjct: 65   IVGLELGIDFGDQDPTSRNAALAAPA--RVVLLATRERGYRSLMRLNSRAFLETPVNQPP 122

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL +  T+ +I LTGG  GPI  A   + + +   R     + FGDRLYV LQRH
Sbjct: 123  HIKFDWL-DGETDDVIALTGGPEGPISLAMLTDPA-LGRLRCERLAQAFGDRLYVELQRH 180

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +R  E+ ++ +AY   LPLVATN   F + +D+EAHD L+ +A   ++++ DR ++
Sbjct: 181  NTDVERRAEAGLIDIAYDMGLPLVATNEPHFATADDFEAHDALLCIASGKLIAETDRVQL 240

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQKEE 307
            TPDH  K R+EM  +F+DLPEAL +TVEIA+RC++      PILP F +    +D ++  
Sbjct: 241  TPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVNDAEEAA 300

Query: 308  ENE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              E   LR +A  GL  R+    +++G   +DY++RL FEL+VI RMK++GYFLIV+DFI
Sbjct: 301  AAEAAELRRQAEQGLADRMRVHGLSQGMTEEDYQKRLAFELDVITRMKYAGYFLIVSDFI 360

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 361  KWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQ 420

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR EVI YVQ++YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P +PA
Sbjct: 421  DRRGEVIEYVQHRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA 480

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             PVSL QAI  + + +  R  DP V R  +I+QKLEGL RHASTHAAGIVIGDRPLS LV
Sbjct: 481  APVSLKQAIESEPKLQAFRDEDPVVARAFDIAQKLEGLTRHASTHAAGIVIGDRPLSDLV 540

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QR + +DL+ +  
Sbjct: 541  PMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRDIHIDLATLGI 600

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D  +Y +L     +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  Y  
Sbjct: 601  EDPVSYQMLARGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCA 660

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMGKKI+ 
Sbjct: 661  RKHGDEESEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGKKIRA 720

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM+KQ+  F+ GA+KNG+ K  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+MK HY
Sbjct: 721  EMEKQRAIFVEGATKNGVPKDSADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMKAHY 780

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+AASMTL+++N +K+ +F  +A++  I++  PSVN     F+VG N IYY+LA +K
Sbjct: 781  PVEFIAASMTLDLNNTDKLSEFRAEAQRLGIKVEAPSVNRSGPTFEVGANTIYYALAGLK 840

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG    + I+EA  DKPF SL DF +RV+ + +N+RV+ESL  AGA DC   +R ++  
Sbjct: 841  GVGLQAVQMIVEARGDKPFASLADFAARVNPRAINKRVIESLAAAGAFDCLDSNRARVFA 900

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLGF 961
              D I    Q   +  T+   ++F    G  +D  ++ L +      + R   E   +GF
Sbjct: 901  GADAIIAACQRSHEAATSGQNDMF----GGLADAPQVVLPQIEPWLPAERLRREYDAIGF 956

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVT 1019
            + SGHPLD Y   L+++ ++ + E    ++      ++AA VVS+ +++T+ G+++G + 
Sbjct: 957  FLSGHPLDDYATALKRLRVQSWAEFCKAVKSGATAGKVAATVVSRMERRTKTGNKMGIMG 1016

Query: 1020 FSEPAKEYEANFF 1032
             S+P   +EA  F
Sbjct: 1017 LSDPTGHFEAVLF 1029


>gi|312114721|ref|YP_004012317.1| DNA polymerase III subunit alpha [Rhodomicrobium vannielii ATCC
            17100]
 gi|311219850|gb|ADP71218.1| DNA polymerase III, alpha subunit [Rhodomicrobium vannielii ATCC
            17100]
          Length = 1151

 Score = 1055 bits (2729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/1036 (52%), Positives = 722/1036 (69%), Gaps = 17/1036 (1%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL VHS+YSLLEGAL +  ++   AAD QPA+AITD NNLF ALEFS+     GIQ
Sbjct: 4    PGFIHLHVHSAYSLLEGALPVKALIKAAAADGQPALAITDRNNLFGALEFSEYLSGEGIQ 63

Query: 69   PIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGC L +        T + G+ P     +IVLL   AEGY  L+ L SR +L      
Sbjct: 64   PIIGCALTLAFPAPADETPRPGQRPDAHSGTIVLLAKDAEGYGNLMRLSSRAFLDSGDGS 123

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            +  + + +L E    GLI L+GG  GP DRAF   ++ +AE RL T  + FG+R YV +Q
Sbjct: 124  NPHVEVEFLVEHAG-GLIALSGGPDGPADRAFAAGNAAIAEARLATLAEAFGNRFYVEIQ 182

Query: 188  RHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            RH G  R R  E Q+++ AY + +PLVATN + F     +EAHD L+ +A    V++ DR
Sbjct: 183  RH-GLARERAVEPQLLRWAYDNGVPLVATNEAYFPKRAVFEAHDALLCIAEGRYVAEDDR 241

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R++PDH+LK +++MV +F+DLPEA+ NT+EIA+RC+F  +   PILP+F+    +D  +
Sbjct: 242  RRLSPDHWLKPQADMVKLFADLPEAVANTIEIAQRCAFRPRPRKPILPQFVAG-SEDTHE 300

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYFLIVAD 362
             E  ELR +A+AGLE RLA   I   +HA    +Y +RL+FEL+VI RMKF GYFLIV+D
Sbjct: 301  AEAAELRRQAIAGLEHRLA--TIPAHFHAASKDEYFKRLEFELDVITRMKFPGYFLIVSD 358

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK   IPVGPGRGSGAGSV A++LTITD+DP+RF LLFERFLNP+R+SMPDFDIDF
Sbjct: 359  FIKWAKAQGIPVGPGRGSGAGSVVAWSLTITDLDPIRFGLLFERFLNPERVSMPDFDIDF 418

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRRDEVI+YV+ KYG  RVAQIIT+G LQA+A LRDVGR LQMPY QVDRLCKL+PN+
Sbjct: 419  CQDRRDEVIQYVRAKYGSNRVAQIITYGKLQARAVLRDVGRVLQMPYGQVDRLCKLVPNN 478

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PV+L +AI  + + +EAR  +  V +LL+ +QKLEGLYRHASTHAAG+VIGDR L +
Sbjct: 479  PANPVTLAEAIEGEPQLQEARDREEIVAQLLDTAQKLEGLYRHASTHAAGVVIGDRDLVE 538

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVP+YRD +SD+ VTQFNMKW+E+AGL+KFDFLGLKTLT+LQK+   L + G  +DL  +
Sbjct: 539  LVPLYRDPKSDMLVTQFNMKWVEQAGLVKFDFLGLKTLTVLQKACALLEKAGRPIDLGHL 598

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L    T G+FQLES+GMR+AL  ++PD   DIIA+V+LYRPGP+DNI  Y
Sbjct: 599  PLDDRPTYEMLAKGDTGGVFQLESTGMREALRKLKPDRFGDIIAMVALYRPGPMDNIETY 658

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             NRK+G E    +HPL  P+L+ET GVIIYQEQVMQ+AQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 659  VNRKHGIEVPDYLHPLAKPILEETYGVIIYQEQVMQLAQVLSGYSLGEADLLRRAMGKKI 718

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K EMD Q  RF+ GA +  I +  A  IFEL+AKFA YGFNKSHAAAYA+I+YQTA++K 
Sbjct: 719  KAEMDAQGARFVKGALEKDIPEARARYIFELVAKFAGYGFNKSHAAAYALIAYQTAYLKA 778

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLA 840
            ++  EF+AASMTL+M N +K+  F ++A++  + I+PPSVN   V+F+  GDN I Y+LA
Sbjct: 779  NHAQEFIAASMTLDMANTDKLYAFTREAKRNGLAILPPSVNKSAVEFEPEGDNAIRYALA 838

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            A+K +G   A HI+EA  DKP+  L DF  R++ K LN+R +E+L  AGA +    +R +
Sbjct: 839  ALKNMGHAAAAHIVEARGDKPYRDLADFMLRINPKALNKRGIETLNAAGAFEDMETNRAK 898

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENEQRVL 959
            + ++LD + ++     ++R    E++F     G+ + ++ L      +     ENE    
Sbjct: 899  VAKNLDRLVEFGSKAAEDRARGQEDMFGGGIAGSPAPRLDLADAPEWSLVETLENELGAA 958

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN---IRLAAMVVSKQQKKTRKGSRIG 1016
            GFY SGHPLD +   L +M +  + +  A ++ +     RLAA V  +Q +K + G+R  
Sbjct: 959  GFYLSGHPLDDFTDQLARMNVLKWSDFSARVQAHGRAESRLAATVTYRQDRKAKSGNRFA 1018

Query: 1017 WVTFSEPAKEYEANFF 1032
            +  FS+P  ++EA  F
Sbjct: 1019 FAGFSDPTGQFEAVIF 1034


>gi|27379977|ref|NP_771506.1| DNA polymerase III subunit alpha [Bradyrhizobium japonicum USDA 110]
 gi|27353130|dbj|BAC50131.1| DNA polymerase III alpha chain [Bradyrhizobium japonicum USDA 110]
          Length = 1167

 Score = 1055 bits (2727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/1032 (50%), Positives = 705/1032 (68%), Gaps = 14/1032 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VHS+YSLL+G++ +  + +    D QPA+A+TDT+NLF ALEFS K   +GI
Sbjct: 3    SAGFVHLHVHSAYSLLKGSIKIGKLAELAKKDHQPALALTDTDNLFGALEFSDKMAGSGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            QPI+GC+L ID  D          P      +VLL +   GY+ L+ L SR +L      
Sbjct: 63   QPIVGCELAIDFGDQDPTARNAIGP----SRVVLLAAQERGYRSLMRLNSRAFLETPDSH 118

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            +  I   W  +  TEGLI LTGG  GPI  A     +++A  R      LFGDRLY+ LQ
Sbjct: 119  APFIKFDWF-DGETEGLIALTGGPDGPISLALAGGMAELAATRCERLATLFGDRLYIELQ 177

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH    +R  ES ++ +AY   LPLVATN   F + +DYEAHD L+ +A   ++++ DR 
Sbjct: 178  RHNIDKERRVESGLIDIAYAKGLPLVATNEPYFAATDDYEAHDALLCIAGGRLIAESDRV 237

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQ 304
            ++TPDH  K R+EM  +F+D+PEAL +TVEIA RCSF      PILP F        D  
Sbjct: 238  QLTPDHRFKTRAEMAVLFADIPEALASTVEIAERCSFRPMTRKPILPFFTVGAAASSDAA 297

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              E  EL+ +A  GL  RL    +++G   +DY +RL FEL+VI RMK++GYFLIV+DFI
Sbjct: 298  AVEAAELKRQAEEGLANRLRVHGLSQGTTEEDYSKRLAFELDVIMRMKYAGYFLIVSDFI 357

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK   IPVGPGRGSGAGS+ A+ALTITD+DP++F LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 358  KWAKSQGIPVGPGRGSGAGSLVAWALTITDLDPIKFGLLFERFLNPERVSMPDFDIDFCQ 417

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR EVI+YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P +PA
Sbjct: 418  DRRGEVIQYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA 477

Query: 485  HPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             PV+L A I  + + +  R  DP V R  +I+Q+LEGL RHASTHAAGIVIGDRPLS+LV
Sbjct: 478  APVTLAAAIESEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELV 537

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  +   L  R + VDL+ +P 
Sbjct: 538  PLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVACKLLKPRDIHVDLATLPI 597

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD E+Y +L     +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  Y +
Sbjct: 598  DDAESYQMLARGEVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCS 657

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ++SGYSL +AD+LRRAMGKKI+ 
Sbjct: 658  RKHGDEEPEYLHPVLEPILKETFGVIIYQEQVMQIAQVMSGYSLGDADLLRRAMGKKIRA 717

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMDKQ++ F++GA KNG+ K  A  IFELLAKFADYGFNKSHAAAYA++SY TA+MK HY
Sbjct: 718  EMDKQRDIFVAGAVKNGVPKGQAETIFELLAKFADYGFNKSHAAAYALVSYHTAYMKAHY 777

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+AASMTL+++N +K+ +F  +A++  I++ PP++N     F+VG+  IYY+LAA+K
Sbjct: 778  PVEFIAASMTLDLNNTDKLSEFRSEAQRLGIKVEPPNINRSGATFEVGEKTIYYALAALK 837

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+E  + +  F SL DF +RV+ + +N+R++ESL  AGA D    +R ++ 
Sbjct: 838  GVGIQAIDQIIEERTKNGLFTSLADFAARVNPRAINKRIIESLAAAGAFDTLEPNRARVF 897

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
               D I    Q   +  T    ++F       +  I L +      + R   E   +GF+
Sbjct: 898  AGADAILAACQRAHEAATIGQNDMFGMSAD--APTIMLPQIEAWLPAERLRREYDAIGFF 955

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTF 1020
             SGHPLD Y  +L+++ ++ + E    ++      ++AA VVS+ +++T+ G+++G +  
Sbjct: 956  LSGHPLDDYATVLKRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGNKMGIMGL 1015

Query: 1021 SEPAKEYEANFF 1032
            S+P   +EA  F
Sbjct: 1016 SDPTGHFEAVLF 1027


>gi|323136417|ref|ZP_08071499.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242]
 gi|322398491|gb|EFY01011.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242]
          Length = 1153

 Score = 1044 bits (2699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/1035 (50%), Positives = 697/1035 (67%), Gaps = 17/1035 (1%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL VH+++SL EGALS+  ++D    D+QPA+A+TDTNNLF+ALEFS+KA  AG+Q
Sbjct: 6    PGFVHLHVHTAFSLREGALSIGKLIDLAVRDEQPALAVTDTNNLFAALEFSEKAAKAGLQ 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G QL +D  D       G+     + ++VLL  T  GY+ L+ L SR YL  +   +
Sbjct: 66   PIAGVQLCVDFGDGKSGGLAGQDE--RLANLVLLAKTEAGYRNLMRLASRAYLETEQGDA 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              + L+ L     E LI LTGG  G +DRAF     + A  RL   +++F +RLY+ +QR
Sbjct: 124  PHVTLAALSADAEE-LIALTGGPDGALDRAFAAGRPEQARARLDVLERMFNNRLYIEIQR 182

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H+   +   E Q++ +AY   LPLVATN   F S  D+EAHD L+ +A  TV S  +R R
Sbjct: 183  HKLKLELEVEPQLLDIAYRRGLPLVATNEPYFASLGDFEAHDALLCIAEGTVTSVSERRR 242

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD--IQK 305
            V+P+H+ K R++M ++F+DLPEA  NTVEIARR SF  +   PI+PRF+    DD  + +
Sbjct: 243  VSPEHWFKTRADMRALFADLPEATANTVEIARRVSFRPKTRKPIMPRFMRDTPDDRPLNE 302

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E  ELR +A  GLE RLA    A+G+  +DY  RLDFEL+ I +M F GYFLIV+DFI+
Sbjct: 303  VEAEELRRQATEGLEARLAAHGPAEGHAREDYFARLDFELSTIEKMGFPGYFLIVSDFIK 362

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK   IPVGPGRGSGAGS+ AYALTITD+DPLRF L FERFLNP+R+SMPDFDIDFCQ 
Sbjct: 363  YAKSKGIPVGPGRGSGAGSLVAYALTITDLDPLRFGLFFERFLNPERVSMPDFDIDFCQT 422

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV+++YG +RVAQIITFGS  A+  LR VGR L+MP  QVD+L KL+P +PA 
Sbjct: 423  RRGEVIEYVRDRYGADRVAQIITFGSFLARGVLRSVGRVLEMPLGQVDKLAKLVPQNPAK 482

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            PV+L +A+A + + REA   D  V RL +++  LEGLY +ASTHAAG+VIGDRPL ++ P
Sbjct: 483  PVTLAEALAGEQKLREAAAEDERVARLFKVAGALEGLYSNASTHAAGVVIGDRPLHEVTP 542

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +YRD +SD+P TQFNMKW+E AGLIKFDFLGLKTLT+L  + D   +R    DL+ +P D
Sbjct: 543  LYRDPKSDMPATQFNMKWVEPAGLIKFDFLGLKTLTVLAMAGDLARRRDPDFDLAKVPLD 602

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D ETY +L    T+G+FQLES+GMR+AL  M  D  EDIIALV+LYRPGP+ NI  Y   
Sbjct: 603  DPETYAMLGRGETVGVFQLESAGMRKALVEMHADRFEDIIALVALYRPGPMANIPTYCAV 662

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K G E+    HP I+P+LKET GVIIYQEQVMQIAQ+LSGY+L EAD+LRRAMGKKIK E
Sbjct: 663  KLGDEEADYYHPKIEPILKETFGVIIYQEQVMQIAQVLSGYTLGEADMLRRAMGKKIKAE 722

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MD Q+ERF+ GA +  +   +A  IF+LLAKFADYGFNKSHAAAYA+I+YQTAW K HYP
Sbjct: 723  MDAQRERFVKGAIEREVKADLANFIFDLLAKFADYGFNKSHAAAYALIAYQTAWFKAHYP 782

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSL 839
             EFLAASMT +    +K+ +F  +AR+  I + PPS+    VDF V     G   I Y+L
Sbjct: 783  AEFLAASMTFDKSQTDKLAEFRDEARRLGIAVEPPSIRRSGVDFDVAPGSDGKLAIRYAL 842

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            +AIKGVG   A  I+ A  D PF SL DF  R++ +++N++VLE+L   GA D     R 
Sbjct: 843  SAIKGVGEGQAESIVRARGDLPFKSLSDFARRINPREVNKKVLENLAACGAFDELQPDRA 902

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
                +++ +   A    ++R      +F   +   +D + L + +  N++ R + E    
Sbjct: 903  TAFAAVEPVLAAANRHTEDRKAGQNALFGEAE---ADDLVLPRVTPWNAAERLQREYDAA 959

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGW 1017
            GF+ SGHPLD Y  +L K+ +  + + VA ++G     RLAA+V+ + +++T+ GS++G 
Sbjct: 960  GFFLSGHPLDAYAGLLPKLRVSRWSKFVADVKGGATAGRLAAVVLDRAERRTKSGSKMGI 1019

Query: 1018 VTFSEPAKEYEANFF 1032
            V  S+   +YEA  F
Sbjct: 1020 VQLSDTTGQYEAILF 1034


>gi|300023432|ref|YP_003756043.1| DNA polymerase III subunit alpha [Hyphomicrobium denitrificans ATCC
            51888]
 gi|299525253|gb|ADJ23722.1| DNA polymerase III, alpha subunit [Hyphomicrobium denitrificans ATCC
            51888]
          Length = 1180

 Score = 1040 bits (2688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/1051 (50%), Positives = 703/1051 (66%), Gaps = 30/1051 (2%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K+P FVHL+VHS+YSLLEGAL +  +     A Q PA+ +TD+NN F ALEFS K   AG
Sbjct: 8    KAPQFVHLKVHSAYSLLEGALPIAKLAKLAEAMQLPALGLTDSNNFFGALEFSDKLWGAG 67

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP------SIVLLVSTAEGYQRLIELVSRMY 120
            +QPI G  LD+D  DN              P       I LL  TA+G+  L+ L   +Y
Sbjct: 68   VQPIAGGSLDVDFGDNRDAQPSALRSLSNEPRSKPAGKIALLAMTADGFANLMRLSKALY 127

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                  +   + ++ ++E  +EG+I LTGG  GPID A       +A +R+ T +K+FGD
Sbjct: 128  FEAAADEPAHVKIARIEEF-SEGIIALTGGPQGPIDSALRDGQHDLALERIKTLEKIFGD 186

Query: 181  RLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            RLYV +QRH   +    E  ++ LAY   +P+VATN   F    DYEAHDVL+ +A    
Sbjct: 187  RLYVEVQRHGLPEEADVEPDLLDLAYARRIPIVATNECYFAQRGDYEAHDVLLCIADGRY 246

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            V + +R R +P+HYLK  +EMVS+F+DLPEAL NTVEIA RC+   +   PILPRF++  
Sbjct: 247  VVEDNRRRASPEHYLKTEAEMVSLFADLPEALANTVEIAMRCTARPEGRKPILPRFVK-- 304

Query: 300  CDDIQKEEEN------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             DD   E EN      EL+ +A  GL  RLA    A G+  +DY +RL +E++VI +MKF
Sbjct: 305  ADDSLSEIENFRLEAAELKAQAKDGLARRLAAHGPAAGFTVEDYEKRLVYEIDVITQMKF 364

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFLIVADFI+W+K N +PVGPGRGSGAGS+ AYALTITD+DPL+F LLFERFLNP+R+
Sbjct: 365  PGYFLIVADFIKWSKANGVPVGPGRGSGAGSLVAYALTITDLDPLQFGLLFERFLNPERI 424

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPDFD+DFCQ++RD VI YVQ KYG +RVAQIIT G LQA+A LRDVGR LQMPY QVD
Sbjct: 425  SMPDFDVDFCQEKRDRVIDYVQKKYGDDRVAQIITHGKLQARAVLRDVGRVLQMPYGQVD 484

Query: 474  RLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            RLCKL+PN+PA+PV+L QAI  + + +E R  +P V RLLEI+QKLEGLYRHASTHAAG+
Sbjct: 485  RLCKLVPNNPANPVTLAQAIEGEPKLQEERDREPIVARLLEIAQKLEGLYRHASTHAAGM 544

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
            VIGDRPL +LVP+YRD +S  P+TQ+N K +E AGL+KFDFLGLKTLT+L+K++  ++Q 
Sbjct: 545  VIGDRPLEELVPLYRDPKSHFPITQYNWKMVEAAGLVKFDFLGLKTLTVLEKAVKLISQV 604

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            RGV VDL  +P DD  TY +L    T G+FQLES+GMR++L+ ++PD  EDIIA+V+LYR
Sbjct: 605  RGVTVDLPSLPLDDKPTYDMLAKADTAGVFQLESTGMRESLKRLKPDRFEDIIAMVALYR 664

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+DNI  Y NRK+G+E +  +H ++  +LKET GVIIYQEQV+QIAQ++ GY+L +AD
Sbjct: 665  PGPMDNIPTYINRKHGEEPVDYLHDMLQGILKETYGVIIYQEQVIQIAQVMGGYTLGQAD 724

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK K EM KQ+ RF+ GA   G+ K  A  IFEL+ KFA YGFNKSHAAAYA+
Sbjct: 725  MLRRAMGKKDKAEMAKQQARFVEGAVAKGVKKEEAKYIFELVDKFAGYGFNKSHAAAYAL 784

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SY TA++K ++  EF AASMTL+M N +K+  F  +AR+  I+++PP VN   VDF V 
Sbjct: 785  VSYHTAYLKANFREEFFAASMTLDMGNTDKLAMFASEARKSGIRMLPPCVNQSAVDFGVE 844

Query: 831  ------GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLE 883
                      I YSLAA+K +G      I+    +K  F SL DF  RVD+K LN+R +E
Sbjct: 845  PAAEGAKHGAIRYSLAALKNIGAGAVETIVNERNEKGAFKSLADFAERVDAKALNKRAIE 904

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            +L   GA D F   R ++  + D I   AQ    N      ++F    G  + ++ L   
Sbjct: 905  TLAKGGAFDAFNNDRARVAANADTILASAQRRTANEAQGMTDLFG--SGGKAAELVLRSA 962

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMV 1001
                   R   E   +GFY SGHPLD Y  +L K+G++ + E  V T RG    RLA +V
Sbjct: 963  EGWTPMERLAAEFEAIGFYLSGHPLDQYDHVLSKLGVRKFTEFEVLTERGATAGRLAGVV 1022

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++ ++++++KG++  + +FS+   ++EA  F
Sbjct: 1023 IAARERRSQKGNKFAFASFSDATGQFEAVIF 1053


>gi|170748452|ref|YP_001754712.1| DNA polymerase III, alpha subunit [Methylobacterium radiotolerans JCM
            2831]
 gi|170654974|gb|ACB24029.1| DNA polymerase III, alpha subunit [Methylobacterium radiotolerans JCM
            2831]
          Length = 1172

 Score = 1035 bits (2677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/1056 (49%), Positives = 715/1056 (67%), Gaps = 38/1056 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL VHSSYSLLEGAL + +++    AD+QPA+A+TDTNNLF ALEFS+KA   G
Sbjct: 6    KEVGFVHLHVHSSYSLLEGALKVGSLIKAAVADRQPALALTDTNNLFGALEFSEKAAGEG 65

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +QPI G QL +  +       Q     PT   IVLL     GY  L+ L SR Y      
Sbjct: 66   VQPIAGVQLSVAFEAADPHQRQA----PTSHGIVLLAQDETGYANLLRLASRAYFDTALG 121

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
            ++ R+    L    +EGLI+LTGG +GP+D AF     ++A  RL   K+ FG DRLYV 
Sbjct: 122  EAPRLDAGALAG-ASEGLIVLTGGMAGPLDAAFRAGRPELALNRLKRLKETFGEDRLYVE 180

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +QRH   +  R E+ ++ LA  H L +VATN   F   +DY+AHD L+A+A   +VS   
Sbjct: 181  IQRHGLPEEGRIETALLDLAGRHGLGIVATNEPFFAKPDDYDAHDALLAIAEGRLVSDDR 240

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE------- 297
            R R+TP H  K R+EM  +F DLP+AL+ TVEIA RC+   +   PILP F         
Sbjct: 241  RRRLTPTHAFKTRAEMAELFRDLPDALQATVEIAMRCAVRARTRKPILPNFGAVAAGETP 300

Query: 298  ------KECDD-----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                   E  D     +  +E  ELR +A AGLE+RL Q   A G+  +DYR+RL FEL+
Sbjct: 301  PMADALAEASDAGAQAVSADEPTELRRQAEAGLELRLKQHGTAPGFSEEDYRKRLAFELD 360

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI +MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFER
Sbjct: 361  VIVKMKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFER 420

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPDFDIDFC + R+ VI+YVQ +YG  +V QIITFG+L A+  LRDVGR L+
Sbjct: 421  FLNPERVSMPDFDIDFCVEGRERVIKYVQQRYGEGQVGQIITFGTLLARGVLRDVGRVLE 480

Query: 467  MPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            MPY QVD+L KL+P +PA+PV+L QAI  + + ++A   +P V RL++I++KLEGL+RHA
Sbjct: 481  MPYGQVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAMEEEPVVGRLIDIAKKLEGLHRHA 540

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            STHAAG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+  
Sbjct: 541  STHAAGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRCC 600

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D L QRG+ +DL+ +P DD  TY  +    T+G+FQ+ES+GMR+AL  MQ D +EDIIA
Sbjct: 601  TDLLKQRGIHIDLASLPLDDPNTYGPMGRGETVGVFQVESAGMRKALCEMQADRLEDIIA 660

Query: 646  LVSLYRPGPIDNIVVYNNRKNGK----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            LV+LYRPGP+ NI VY  RK G+    E      P ++PMLKET G+I+YQEQVM+IA++
Sbjct: 661  LVALYRPGPMANIPVYCERKLGRDAGNEASWYPDPKLEPMLKETFGIIVYQEQVMEIAKV 720

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            L+GYSL EAD+LRRAMGKKI+ EMD Q++RF+ G ++ G++K  A  IF+LLAKFADYGF
Sbjct: 721  LAGYSLGEADMLRRAMGKKIRAEMDAQRDRFLKGCTERGLTKAKANEIFDLLAKFADYGF 780

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NKSHAAAYA+++YQTA++K ++PVEFLAA+MTL++DN +K+ +F QDA++  I + PPS+
Sbjct: 781  NKSHAAAYALLTYQTAYLKANFPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPSI 840

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
            NT    F+V D +I+Y+LAAIKGVG    R ++EA  D+PF  L     R++ + +N+R 
Sbjct: 841  NTSGEVFEVRDGKIFYALAAIKGVGREAVRALVEARGDRPFKDLACLARRLNPRMINKRT 900

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LESLV AGALDC    R +   +++ I K A    +  T    ++F    G  +D ++L 
Sbjct: 901  LESLVQAGALDCIEPDRARAFAAVEPIMKLAASAVEAETAGVTDMFG---GVVADDVSLR 957

Query: 942  --KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI---R 996
                 +   +   + E   +GF+ SGHPLD Y  +L K+ ++ + +    +R       R
Sbjct: 958  IPPHEIWPMADTLKREYAAIGFFISGHPLDEYGDLLDKLRVQSWTDFCRAVRAGTSSVGR 1017

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +AA V+ + +++T+ G+++G VT S+    +EA  F
Sbjct: 1018 VAASVLDRAERRTKTGNKMGIVTLSDRTAHFEAIIF 1053


>gi|163850481|ref|YP_001638524.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1]
 gi|240137543|ref|YP_002962014.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1]
 gi|163662086|gb|ABY29453.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1]
 gi|240007511|gb|ACS38737.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1]
          Length = 1173

 Score = 1028 bits (2657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/1057 (50%), Positives = 713/1057 (67%), Gaps = 39/1057 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL VHSSYSLLEG +   +++   AAD+QPA+A+TDTNNLF ALEFS+ A  AG
Sbjct: 6    KEVGFVHLHVHSSYSLLEGGVKAGDLVKAAAADRQPALALTDTNNLFGALEFSEYAAKAG 65

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPI G QL I  +    M    + P     +IVLL     GY  L+ L SR +      
Sbjct: 66   IQPIAGLQLTICFEAPDPMA---RLPQAGCANIVLLAQDETGYGNLLRLGSRAHFDGPLG 122

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVN 185
             +  + +S L E   EGLI LTGG SGP+D +        A +RL   K  FG+  LYV 
Sbjct: 123  AAPNLAVSAL-EGNVEGLIGLTGGLSGPLDTSLRAGRVDQAARRLEILKGAFGEEHLYVE 181

Query: 186  LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +QRH G D  R  E ++++LA T+ L +VATN   F    DY+AHD L+A+A   +VS +
Sbjct: 182  IQRH-GLDDERAVERELLRLADTNGLGIVATNEPFFAKPGDYDAHDALLAIAEGRLVSDE 240

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI------- 296
             R R+TP H    R+ M+ +F DLP+AL  +VEIA RCS+  +   PILP F        
Sbjct: 241  RRRRLTPRHAFTTRAAMMELFRDLPDALSASVEIAMRCSYRARTRKPILPNFASVAAGEA 300

Query: 297  -----------EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                       E     +  +E  EL  +A AGLE+RL Q   A G+  +DYR RL FEL
Sbjct: 301  PPMADALAEAAETPVQAVAADEPTELCRQAEAGLELRLKQHGTAPGFTEEDYRARLKFEL 360

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +VI +MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFE
Sbjct: 361  DVIVKMKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFE 420

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+SMPDFDIDFC + R+ VIRYVQ +YG  +V QIITFG+L A+  LRDVGR L
Sbjct: 421  RFLNPERVSMPDFDIDFCVEGRERVIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVL 480

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            +MPY QVD+L KL+P +PA+PV+L QAI  + + ++A   +P V RL+EIS+KLEGL+RH
Sbjct: 481  EMPYGQVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAIEEEPIVARLIEISKKLEGLHRH 540

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            ASTHAAG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ 
Sbjct: 541  ASTHAAGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRC 600

Query: 585  SLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
              D L QRG++VDL+ IP DD +TY  +    T+ +FQ+ES+GMR+AL  MQ D +EDII
Sbjct: 601  CTDLLKQRGIEVDLAQIPLDDKKTYEPMGRGETVAVFQVESAGMRKALCEMQADRLEDII 660

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGK----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            ALV+LYRPGP+ NI VY  RK G+    E     HP+++P+LKET G+I+YQEQVM++A+
Sbjct: 661  ALVALYRPGPMANIPVYCERKLGRDAGNEASWYSHPMLEPILKETFGIIVYQEQVMEVAK 720

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +L+GY+L EAD+LRRAMGKKIK EMD Q++RF+ G ++NG++K  A  IF+LLAKFADYG
Sbjct: 721  VLAGYTLGEADMLRRAMGKKIKAEMDAQRDRFVKGCTENGLTKAKADEIFDLLAKFADYG 780

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSHAAAYA+++YQTA++K ++PVEFLAA+MTL++DN +K+ +F QDA++  I + PPS
Sbjct: 781  FNKSHAAAYALVTYQTAYLKANHPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPS 840

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
            VNT  V F V + RI Y+LAAIKGVG +    I+ A  DKPF  L  F  R++ + +N+R
Sbjct: 841  VNTSGVVFDVREGRILYALAAIKGVGRSAVESIVAARGDKPFKDLACFARRLNPRHVNKR 900

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE+L+ AGALDC    R +   +++ + K AQ   +  T+   ++F    G  S  + L
Sbjct: 901  TLENLIAAGALDCIEPDRARAWAAVEPMMKMAQGAAEAETSGITDMFG---GVASVDVAL 957

Query: 941  EKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--- 995
                 E    + + + E   +GF+ SGHPLD Y PIL K+ ++ + +    +R       
Sbjct: 958  RIPPHEFWTHTDKLKRECDAIGFFLSGHPLDEYGPILEKLRVQSWADFCRAVRAGTASVG 1017

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            R+AA V+ + +++T+ G+++G V  S+    +EA  F
Sbjct: 1018 RIAASVLDRSERRTKSGNKLGIVILSDQTGHFEAIIF 1054


>gi|218529177|ref|YP_002419993.1| DNA polymerase III subunit alpha [Methylobacterium chloromethanicum
            CM4]
 gi|218521480|gb|ACK82065.1| DNA polymerase III, alpha subunit [Methylobacterium chloromethanicum
            CM4]
          Length = 1173

 Score = 1027 bits (2655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/1057 (50%), Positives = 713/1057 (67%), Gaps = 39/1057 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL VHSSYSLLEG +   +++   AAD+QPA+A+TDTNNLF ALEFS+ A  AG
Sbjct: 6    KEVGFVHLHVHSSYSLLEGGVKAGDLVKAAAADRQPALALTDTNNLFGALEFSEYAAKAG 65

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPI G QL I  +    M    + P     +IVLL     GY  L+ L SR +      
Sbjct: 66   IQPIAGLQLTICFEAPDPMA---RLPQAGCANIVLLAQDETGYGNLLRLGSRAHFDGPLG 122

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVN 185
             +  + +S L E   EGLI LTGG SGP+D +        A +RL   K  FG+  LYV 
Sbjct: 123  AAPNLAVSVL-EGNVEGLIGLTGGLSGPLDTSLRAGRVDQAARRLEILKGAFGEEHLYVE 181

Query: 186  LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +QRH G D  R  E ++++LA T+ L +VATN   F    DY+AHD L+A+A   +VS +
Sbjct: 182  IQRH-GLDDERAVERELLRLADTNGLGIVATNEPFFAKPGDYDAHDALLAIAEGRLVSDE 240

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI------- 296
             R R+TP H    R+ M+ +F DLP+AL  +VEIA RCS+  +   PILP F        
Sbjct: 241  RRRRLTPRHAFTTRAAMMELFRDLPDALSASVEIAMRCSYRARTRKPILPNFASVAAGEA 300

Query: 297  -----------EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                       E     +  +E  EL  +A AGLE+RL Q   A G+  +DYR RL FEL
Sbjct: 301  PPMADALAEAAETPVQAVAADEPTELCRQAEAGLELRLKQHGTAPGFTEEDYRARLKFEL 360

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +VI +MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFE
Sbjct: 361  DVIVKMKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFE 420

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+SMPDFDIDFC + R+ VIRYVQ +YG  +V QIITFG+L A+  LRDVGR L
Sbjct: 421  RFLNPERVSMPDFDIDFCVEGRERVIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVL 480

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            +MPY QVD+L KL+P +PA+PV+L QAI  + + ++A   +P V RL+EIS+KLEGL+RH
Sbjct: 481  EMPYGQVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAIEEEPIVARLIEISKKLEGLHRH 540

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            ASTHAAG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ 
Sbjct: 541  ASTHAAGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRC 600

Query: 585  SLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
              D L QRG++VDL+ IP DD +TY  +    T+ +FQ+ES+GMR+AL  MQ D +EDII
Sbjct: 601  CTDLLKQRGIEVDLAQIPLDDKKTYEPMGRGETVAVFQVESAGMRKALCEMQADRLEDII 660

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGK----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            ALV+LYRPGP+ NI VY  RK G+    E     HP+++P+LKET G+I+YQEQVM++A+
Sbjct: 661  ALVALYRPGPMANIPVYCERKLGRDAGNEASWYSHPMLEPILKETFGIIVYQEQVMEVAK 720

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +L+GY+L EAD+LRRAMGKKIK EMD Q++RF+ G ++NG++K  A  IF+LLAKFADYG
Sbjct: 721  VLAGYTLGEADMLRRAMGKKIKAEMDAQRDRFVKGCTENGLTKAKADEIFDLLAKFADYG 780

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSHAAAYA+++YQTA++K ++PVEFLAA+MTL++DN +K+ +F QDA++  I + PPS
Sbjct: 781  FNKSHAAAYALVTYQTAYLKANHPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPS 840

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
            VNT  V F V + RI Y+LAAIKGVG +    I+ A  DKPF  L  F  R++ + +N+R
Sbjct: 841  VNTSGVVFDVREGRILYALAAIKGVGRSAVESIVAARGDKPFKDLACFARRLNPRHVNKR 900

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE+L+ AGALDC    R +   +++ + K AQ   +  T+   ++F    G  S  + L
Sbjct: 901  TLENLIAAGALDCIEPDRARAWAAVEPMMKMAQGAAEAETSGITDMFG---GVASVDVAL 957

Query: 941  EKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--- 995
                 E    + + + E   +GF+ SGHPLD Y PIL K+ ++ + +    +R       
Sbjct: 958  RIPPHEFWTHTDKLKRECDAIGFFLSGHPLDEYGPILEKLRVQSWADFCRAVRAGTASVG 1017

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            R+AA V+ + +++T+ G+++G V  S+    +EA  F
Sbjct: 1018 RIAASVLDRSERRTKSGNKLGIVILSDQTGHFEAIIF 1054


>gi|188580262|ref|YP_001923707.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001]
 gi|179343760|gb|ACB79172.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001]
          Length = 1173

 Score = 1025 bits (2651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/1057 (49%), Positives = 714/1057 (67%), Gaps = 39/1057 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL VHSSYSLLEG + + +++   AAD+QPA+A+TDTNNLF ALEFS+KA   G
Sbjct: 6    KEVGFVHLHVHSSYSLLEGGVKVADLVKAAAADRQPALALTDTNNLFGALEFSEKAAGTG 65

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPI G QL +  +    M    + P     +IVLL     GY  L+ L SR +      
Sbjct: 66   IQPIAGLQLTVCFEAPDPMA---RMPQAGCANIVLLAQDETGYGNLLRLGSRAHFDGPLG 122

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
             +  + +S L E   +GLI LTGG +GP+D +     +  A +RL   K  FG DRLYV 
Sbjct: 123  AAPNLAVSAL-EGNVDGLIGLTGGLTGPLDTSLRAGRADQAARRLEVLKDAFGEDRLYVE 181

Query: 186  LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +QRH G D  R  E ++++LA  + L +VATN   F    DY+AHD L+A+A   +VS +
Sbjct: 182  IQRH-GLDDERAVERELLRLADGNGLGIVATNEPFFAKPGDYDAHDALLAIAEGRLVSDE 240

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD- 302
             R R+TP H    R+ M+ +F DLP+AL  +VEIA RC+   +   PILP F      + 
Sbjct: 241  RRRRLTPRHAFTTRAAMMELFRDLPDALSASVEIAMRCAVRARTRKPILPNFASVAAGEA 300

Query: 303  -----------------IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                             +  +E  EL  +A AGLE+RL Q   A G+  +DYR RL FEL
Sbjct: 301  PPMAEALAEAADAPVQAVAADEPTELCRQAEAGLELRLKQHGTAPGFSEEDYRARLKFEL 360

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +VI +MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFE
Sbjct: 361  DVIVKMKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFE 420

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+SMPDFDIDFC + R+ VIRYVQ +YG  +V QIITFG+L A+  LRDVGR L
Sbjct: 421  RFLNPERVSMPDFDIDFCVEGRERVIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVL 480

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            +MPY QVD+L KL+P +PA+PV+L QAI  + + ++A   +P V RL+EIS+KLEGL+RH
Sbjct: 481  EMPYGQVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAIEEEPIVARLIEISKKLEGLHRH 540

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            ASTHAAG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ 
Sbjct: 541  ASTHAAGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRC 600

Query: 585  SLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
              D L QRG++VDL+ IP DD +TY  +    T+ +FQ+ES+GMR+AL  MQ D +EDII
Sbjct: 601  CTDLLKQRGIEVDLAQIPLDDKKTYEPMGRGETVAVFQVESAGMRKALCEMQADRLEDII 660

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGK----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            ALV+LYRPGP+ NI VY  RK G+    E     HP+++P+LKET G+I+YQEQVM++A+
Sbjct: 661  ALVALYRPGPMANIPVYCERKLGRDAGNEASWYSHPMLEPILKETFGIIVYQEQVMEVAK 720

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +L+GY+L EAD+LRRAMGKKIK EMD Q++RF+ G  ++GI++  A  IF+LLAKFADYG
Sbjct: 721  VLAGYTLGEADMLRRAMGKKIKAEMDAQRDRFVKGCLESGIAQAKANEIFDLLAKFADYG 780

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSHAAAYA+++YQTA++K +YPVEFLAA+MTL++DN +K+ +F QDA++  I + PPS
Sbjct: 781  FNKSHAAAYALVTYQTAYLKANYPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPS 840

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
            VNT  V F V + RI Y+LAAIKGVG +    I+ A  DKPF  L  F  R++ + +N+R
Sbjct: 841  VNTSGVVFDVKEGRILYALAAIKGVGRSAVESIVAARGDKPFKDLACFARRLNPRHVNKR 900

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE+L+ AGALDC    R +   +++ + K AQ   +  T+   ++F    G  S  + L
Sbjct: 901  TLENLIAAGALDCIEPDRARAWAAVEPMMKMAQGAAEAETSGITDMFG---GVASADVAL 957

Query: 941  EKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--- 995
                 E    + + + E   +GF+ SGHPLD Y PIL K+ ++ + +    +R  +    
Sbjct: 958  RIPPHEFWTHTDKLKRECDAIGFFLSGHPLDEYGPILEKLRVQSWADFCRAVRAGSASVG 1017

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            R+AA V+ + +++T+ G+++G V  S+    +EA  F
Sbjct: 1018 RIAASVLDRSERRTKSGNKLGIVILSDQTGHFEAIIF 1054


>gi|220927035|ref|YP_002502337.1| DNA polymerase III subunit alpha [Methylobacterium nodulans ORS 2060]
 gi|219951642|gb|ACL62034.1| DNA polymerase III, alpha subunit [Methylobacterium nodulans ORS
            2060]
          Length = 1158

 Score = 1023 bits (2646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/1042 (50%), Positives = 714/1042 (68%), Gaps = 23/1042 (2%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL  HSSYSLLEGAL + +++   +AD+QPA+A+TDTNNLF ALEFS+KA +AG
Sbjct: 5    KDVGFVHLHTHSSYSLLEGALKIGDLVKAASADRQPALALTDTNNLFGALEFSEKAASAG 64

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPI G QL +  +        G +P   +P++VLL     GY  L+ L S  Y      
Sbjct: 65   IQPIAGIQLSVLFEAPEPGQRGGPSP---LPNLVLLAKDETGYGHLLRLASLAYFDGPLG 121

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
            ++ R+ +  L +    GLI LTGG  GP+D        + A  RL    + FG D LYV 
Sbjct: 122  EAPRVPIEALTDCAP-GLIALTGGFDGPLDSCLRAARPEHAASRLARLLEAFGEDHLYVE 180

Query: 186  LQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +QRH   D R  E++++ LA  H LPLVATN   F   EDYEAHD L+A+A   +VS + 
Sbjct: 181  IQRHGLPDERTVEAELIALADRHGLPLVATNEPFFAKPEDYEAHDALLAIAEGRIVSDEK 240

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDI 303
            R R+TP H  K R+ MV +F DLP+AL  +VEIA RC++ ++   PILP F +       
Sbjct: 241  RRRLTPRHDFKTRAAMVELFRDLPDALAASVEIAMRCAYRVRTRKPILPSFGLPAGHAPA 300

Query: 304  QK----EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            Q     +E  EL+ +A AGL  RLAQ   A+G   QDYR RL +E+ +I +MKF GYFLI
Sbjct: 301  QAAEFLDEAGELKRQAEAGLTRRLAQAGPAEGLTEQDYRDRLAYEIGIITKMKFPGYFLI 360

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V+DFI+WAK N+IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLNP+R+SMPDFD
Sbjct: 361  VSDFIKWAKANDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLNPERVSMPDFD 420

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC   R+ VI YVQ++YG  +VAQIITFG+L A+  LRDVGR L+MPY QVD+L KL+
Sbjct: 421  IDFCVVGRERVIEYVQSRYGERQVAQIITFGTLLARGVLRDVGRVLEMPYGQVDKLTKLV 480

Query: 480  PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P +PA+PV+L QAI  + R + A   +P V RL+EI++KLEGL+RHASTHAAG+VIGDRP
Sbjct: 481  PQNPANPVTLAQAIEGEPRLQSAMEEEPVVARLMEIAKKLEGLHRHASTHAAGVVIGDRP 540

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            L +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ + D L +RG+++DL
Sbjct: 541  LEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTVLRGATDLLKRRGIEIDL 600

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  TY  L     +G+FQ+ES+GMR+AL  M  D  ED+IALV+LYRPGP+ NI
Sbjct: 601  ATLPIDDEHTYERLRKGEVVGVFQVESAGMRKALVEMCADRFEDLIALVALYRPGPMANI 660

Query: 659  VVYNNRKNGK----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
             VY  RK G+    E +   HP ++P+L ET G+I+YQEQVM++A++L+GYSL +AD+LR
Sbjct: 661  PVYCERKLGRDAGNEAVWYPHPKLEPILAETFGIIVYQEQVMEVAKVLAGYSLGDADLLR 720

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKKIK EMD Q++RF+ GA + G+ +  A  IF+LLAKFADYGFNKSHAAAYA+I+Y
Sbjct: 721  RAMGKKIKAEMDAQRDRFLKGAMERGLDRAKADEIFDLLAKFADYGFNKSHAAAYALITY 780

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEFLAASM+ ++D+ +K+ +  QDA++ +I++ PPSVN   V F+V D  
Sbjct: 781  QTAYLKANYPVEFLAASMSQDLDDTDKLAELRQDAQRLDIKVEPPSVNRSGVTFEVHDGT 840

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I Y+LAAIKGVG      I++A  D+PF  L DF  R++ + +N+R LESLV AGALD  
Sbjct: 841  IRYALAAIKGVGRAAVEAIVQARGDRPFRDLGDFARRLNPRLVNKRTLESLVGAGALDEI 900

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE--NSSVRF 952
               R +   +++ + + AQ   +       ++F    G  +  + L   + E   ++ R 
Sbjct: 901  EPDRARAFAAIEPMLRLAQGALEAEAVGMSDMFG---GVAASDVALRIPAYEPWPAADRL 957

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAMVVSKQQKKTR 1010
            + E   +GF+ SGHPLD Y  +L+K+ ++ + E   ++R GN++ R+AA V+ + +++T+
Sbjct: 958  KKEYEAVGFFLSGHPLDEYGDLLKKLRVQTWVEFCRSVRAGNSVGRVAATVLDRSERRTK 1017

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G++IG V  S+    +EA  F
Sbjct: 1018 TGNKIGIVNLSDQTGHFEAIVF 1039


>gi|254560015|ref|YP_003067110.1| DNA polymerase III subunit alpha [Methylobacterium extorquens DM4]
 gi|254267293|emb|CAX23125.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens DM4]
          Length = 1173

 Score = 1022 bits (2642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/1057 (49%), Positives = 712/1057 (67%), Gaps = 39/1057 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   F+HL VHSSYSLLEG +   +++   AAD+QPA+A+TDTNNLF ALEFS+ A  AG
Sbjct: 6    KEVGFIHLHVHSSYSLLEGGVKAGDLVKAAAADRQPALALTDTNNLFGALEFSEYAAKAG 65

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPI G QL I  +    M    + P     +IVLL     GY  L+ L SR +      
Sbjct: 66   IQPIAGLQLTICFEAPDPMA---RLPQAGCANIVLLAQDETGYGNLLRLGSRAHFDGPLG 122

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVN 185
             +  + +S L E   EGLI LTGG SGP+D +        A +RL   K  FG+  LYV 
Sbjct: 123  AAPNLAVSAL-EGNVEGLIGLTGGLSGPLDTSLRAGRVDQAARRLEILKGAFGEEHLYVE 181

Query: 186  LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +QRH G D  R  E ++++LA T+ L +VATN   F    DY+AHD L+A+A   +VS +
Sbjct: 182  IQRH-GLDDERAVERELLRLADTNGLGIVATNEPFFAKPGDYDAHDALLAIAEGRLVSDE 240

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD- 302
             R R+TP H    R+ M+ +F DLP+AL  +VEIA RCS+  +   PILP F      + 
Sbjct: 241  RRRRLTPRHAFTTRAAMMELFRDLPDALSASVEIAMRCSYRARTRKPILPNFASVAAGEA 300

Query: 303  -----------------IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                             +  +E  EL  +A AGL++RL Q   A G+  +DYR RL FEL
Sbjct: 301  PPMADALAEAAQTPVQAVAADEPTELCRQAEAGLKLRLKQHGTAPGFTEEDYRARLKFEL 360

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +VI +MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFE
Sbjct: 361  DVIVKMKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFE 420

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+SMPDFDIDFC + R+ VIRYVQ +YG  +V QIITFG+L A+  LRDVGR L
Sbjct: 421  RFLNPERVSMPDFDIDFCVEGRERVIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVL 480

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            +MPY QVD+L KL+P +PA+PV+L QAI  + + ++A   +P V RL+EIS+KLEGL+RH
Sbjct: 481  EMPYGQVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAIEEEPIVARLIEISKKLEGLHRH 540

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            ASTHAAG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ 
Sbjct: 541  ASTHAAGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRC 600

Query: 585  SLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
              D L QRG++VDL+ IP DD +TY  +    T+ +FQ+ES+GMR+AL  MQ D +EDII
Sbjct: 601  CTDLLKQRGIEVDLAQIPLDDKKTYEPMGRGETVAVFQVESAGMRKALCEMQADRLEDII 660

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGK----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            ALV+LYRPGP+ NI VY  RK G+    E     HP+++P+LKET G+I+YQEQVM++A+
Sbjct: 661  ALVALYRPGPMANIPVYCERKLGRDAGNEASWYSHPMLEPILKETFGIIVYQEQVMEVAK 720

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +L+GY+L EAD+LRRAMGKKIK EMD Q++RF+ G ++NG++K  A  IF+LLAKFADYG
Sbjct: 721  VLAGYTLGEADMLRRAMGKKIKAEMDAQRDRFVKGCTENGLTKAKADEIFDLLAKFADYG 780

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSHAAAYA+++YQTA++K ++PVEFLAA+MTL++DN +K+ +F QDA++  I + PPS
Sbjct: 781  FNKSHAAAYALVTYQTAYLKANHPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPS 840

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
            VNT  V F V + RI Y+LAAIKGVG +    I+ A  D PF  L  F  R++ + +N+R
Sbjct: 841  VNTSGVVFDVREGRILYALAAIKGVGRSAVESIVAARGDTPFKDLACFARRLNPRHVNKR 900

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE+L+ AGALDC    R +   +++ + K AQ   +  T+   ++F    G  S  + L
Sbjct: 901  TLENLIAAGALDCIEPDRARAWAAVEPMMKMAQGAAEAETSGITDMFG---GVASVDVAL 957

Query: 941  EKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--- 995
                 E    + + + E   +GF+ SGHPLD Y PIL K+ ++ + +    +R       
Sbjct: 958  RIPPHEFWTHTDKLKRECDAIGFFLSGHPLDEYGPILEKLRVQSWADFCRAVRAGTASVG 1017

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            R+AA V+ + +++T+ G+++G V  S+    +EA  F
Sbjct: 1018 RIAASVLDRSERRTKSGNKLGIVILSDQTGHFEAIIF 1054


>gi|170744048|ref|YP_001772703.1| DNA polymerase III subunit alpha [Methylobacterium sp. 4-46]
 gi|168198322|gb|ACA20269.1| DNA polymerase III, alpha subunit [Methylobacterium sp. 4-46]
          Length = 1168

 Score = 1019 bits (2634), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/1052 (49%), Positives = 705/1052 (67%), Gaps = 33/1052 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL  HSSYSLLEGAL L +++   A D+QPA+A+TDTNNLF ALEFS+KA   G
Sbjct: 5    KDVGFVHLHTHSSYSLLEGALKLGDLVKAAAGDRQPALALTDTNNLFGALEFSEKAAGLG 64

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPI G QL +  +        G  P P    +VLL     GY  L++L S  Y      
Sbjct: 65   IQPIAGIQLSVLFEAPEPGQRGGPAPLP---HLVLLAKDETGYGHLLKLASLAYFDGPLG 121

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
            ++ R+ +  L++    GLI LTGG  GP+D        + A  RL    + FG D LYV 
Sbjct: 122  EAPRVPVEALRDC-APGLIALTGGPGGPLDSCLRAARPEHAAGRLARLVEAFGEDHLYVE 180

Query: 186  LQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +QRH   D R  E++++ LA  H LPLVATN   F   EDYEAHD L+A+A   +VS + 
Sbjct: 181  IQRHGLPDERAVEAELIGLADRHGLPLVATNEPFFARPEDYEAHDALLAIAEGRLVSDEK 240

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--------- 295
            R R+TP H  K R+ M  +F DLP+AL  +VEIA RC++ ++   PILP F         
Sbjct: 241  RRRLTPRHDFKTRAAMAELFRDLPDALAASVEIAMRCAYRVRTRKPILPSFGVSGGPAAR 300

Query: 296  ------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                        D   +E  EL+ +A AGL  RLA+   A+G   QDYR RL +E+ +I 
Sbjct: 301  DAAQAGSPAPAGDPALDEAGELKRQAEAGLARRLAEAGPAEGLSEQDYRDRLAYEIGIIT 360

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +MKF GYFLIV+DFI+WAK N+IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLN
Sbjct: 361  KMKFPGYFLIVSDFIKWAKANDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLN 420

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC   R+ VI YVQ++YG  +VAQIITFG+L A+  LRDVGR L+MPY
Sbjct: 421  PERVSMPDFDIDFCVVGRERVIEYVQSRYGEAQVAQIITFGTLLARGVLRDVGRVLEMPY 480

Query: 470  SQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
             QVD+L KL+P +PA+PV+L QAI  + R + A   +P V RL+EI++KLEGL+RHASTH
Sbjct: 481  GQVDKLTKLVPQNPANPVTLVQAIEGEPRLQSAMEEEPVVARLMEIAKKLEGLHRHASTH 540

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+VIGDRPL  LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ + D 
Sbjct: 541  AAGVVIGDRPLEALVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTVLRGATDL 600

Query: 589  LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            L QRG+ +DL+ +P DD  TY  L     +G+FQ+ES+GMR+AL  M  D  ED+IALV+
Sbjct: 601  LEQRGITLDLAALPLDDERTYERLRKGEVVGVFQVESAGMRKALVEMCADRFEDLIALVA 660

Query: 649  LYRPGPIDNIVVYNNRKNGK----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            LYRPGP+ NI VY  RK G+    E +   HP ++P+L ET G+I+YQEQVM++A++L+G
Sbjct: 661  LYRPGPMANIPVYCERKLGRDAGNEAVWYPHPKLEPILAETFGIIVYQEQVMEVAKVLAG 720

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YSL +AD+LRRAMGKKIK EMD Q++RF+ GA + G+ K  A  IF+LLAKFADYGFNKS
Sbjct: 721  YSLGDADLLRRAMGKKIKAEMDAQRDRFLKGAMERGLDKAKANEIFDLLAKFADYGFNKS 780

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAAAYA+I+YQTA++K +YPVEFLAASM+ ++D+ +K+ +  QDA++  I++ PPSVN  
Sbjct: 781  HAAAYALITYQTAYLKANYPVEFLAASMSQDLDDTDKLAELRQDAQRLAIKVEPPSVNRS 840

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
             V F+V D  I Y+LAAIKGVG      I++A  D+PF  L DF  R++ + +N+R LES
Sbjct: 841  GVTFEVHDGTIRYALAAIKGVGRAAVEAIVQARGDRPFRDLGDFARRLNPRLVNKRTLES 900

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE--K 942
            LV AGALD     R +   +++ + + AQ   +  T    ++F    G  +  + L    
Sbjct: 901  LVGAGALDEIEPDRARAFAAIEPMLRLAQGALEAETVGMTDMFG---GVAAATVALRIPP 957

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAM 1000
            +    ++ R + E   +GF+ SGHPLD Y  +L+K+ ++ + E   ++R GN++ R+AA 
Sbjct: 958  YDPWPAADRLKKEYEAVGFFLSGHPLDEYGELLKKLRVQTWVEFCRSVRAGNSVGRVAAT 1017

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V+ + +++T+ G+++G V  S+    +EA  F
Sbjct: 1018 VLDRSERRTKTGNKLGIVNLSDQTGHFEAIVF 1049


>gi|182678571|ref|YP_001832717.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica
            ATCC 9039]
 gi|182634454|gb|ACB95228.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica
            ATCC 9039]
          Length = 1159

 Score = 1012 bits (2616), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/1046 (50%), Positives = 695/1046 (66%), Gaps = 28/1046 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  F+HL VHS++SL EGA+ +  ++   AAD  PA+A+TDTNNLF ALEFS+K   +GI
Sbjct: 4    SVGFIHLHVHSAFSLREGAIKIEKLVKLAAADAMPALALTDTNNLFGALEFSEKLVKSGI 63

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            QPI G QL +D  D   M  +G+       ++VLL     GY  L+ L SR +L      
Sbjct: 64   QPIAGLQLTVDFGDGAAMAPRGEENGAGRANLVLLAQDEAGYVNLMHLTSRAWLDPVPGD 123

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +    L     +GLI L+GG  GP+DRAF     + A  R      LF +RLYV LQ
Sbjct: 124  PPHVRFDQLHG-HADGLIALSGGPDGPLDRAFAAQRPEQAVLRAQHLAALFPNRLYVELQ 182

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH    +R  E  ++ LAY   LPL ATN   F +  DYEAHD L+ +A   V+ +  R 
Sbjct: 183  RHSLQAERSNEPLLLDLAYDRSLPLAATNEPYFAAASDYEAHDALLCIAEGAVLGEPQRR 242

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +++P+H LK R+EMV++F+DLPEA  NTVEIA RC++      PILPRF +    D   E
Sbjct: 243  QLSPEHRLKTRTEMVALFADLPEATANTVEIAMRCAYRPLTRKPILPRFGDTGHAD---E 299

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E  ELR +A AGLE RLA    A G+   DYR RL FEL++I +M+F GYFLIVADFI++
Sbjct: 300  EAKELRRQAEAGLEKRLAAHPPAPGFTEDDYRARLAFELDIIVKMQFPGYFLIVADFIKY 359

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK  +IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SMPDFDIDFCQDR
Sbjct: 360  AKSQDIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQDR 419

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV+ +YG ++VAQIITFGS  A+  +R+VGR L+MP  QVD+L KL+P +PA P
Sbjct: 420  RDEVIAYVRRRYGEDKVAQIITFGSFLARGVMRNVGRVLEMPLGQVDKLAKLVPQNPAAP 479

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            VSL QAI  + R +EA  ++P V R+L I++ LEGLY +ASTHAAGIVIGDRPL  LVP+
Sbjct: 480  VSLKQAIEGEPRLQEAASSEPRVARMLTIAETLEGLYSNASTHAAGIVIGDRPLEHLVPL 539

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD +SD+P TQFNMKW+E AGL+KFDFLGLKTLT L   +  LA+RG+ VDL+ IP DD
Sbjct: 540  YRDPKSDMPATQFNMKWVEPAGLVKFDFLGLKTLTTLSTCVKLLAKRGIIVDLAKIPLDD 599

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +TY +L    T+G+FQLES+GMR+AL  M+ D  EDIIALV+LYRPGP+ NI  Y   K
Sbjct: 600  QKTYAMLGRGETVGVFQLESAGMRKALVEMRADHFEDIIALVALYRPGPMANIPTYCAVK 659

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G+EK   IHP I+ +LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK EM
Sbjct: 660  LGEEKADYIHPKIEHILKETFGVIIYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKAEM 719

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D Q+ RF++G+   G++K  A  IF+LLAKFADYGFNKSHAAAYA+I+YQTAW K ++PV
Sbjct: 720  DAQRSRFVTGSVDRGLTKKQADEIFDLLAKFADYGFNKSHAAAYALIAYQTAWFKANHPV 779

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNR---------- 834
            EFLAASMTL+  N +K+ +FC +AR+  I +  P +    VDF V  +N+          
Sbjct: 780  EFLAASMTLDKSNTDKLAEFCNEARRLGIPVDRPCIQKSGVDFDVALENKGAGQESKESE 839

Query: 835  -----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                 I Y+L+AIKGVG+  A  ++ A A + F  L DF  R++ +++N+R+LE LV AG
Sbjct: 840  NANLHIRYALSAIKGVGSAQAEALVAARAGRSFKDLSDFTHRLNPREINKRMLECLVAAG 899

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A D     R ++  +++ +   A    +        +F    G  +  I   +      +
Sbjct: 900  AFDTLDKDRAKIFATIETLLAMANRRCEEEAAGQSVLFG---GPAASAIIFPQTDPWPLA 956

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIK---GYEESVATIRGNNIRLAAMVVSKQQ 1006
             R + E   +GF+ SGHPLD Y  IL ++ ++    +   V   + +  RLAA V+ +++
Sbjct: 957  ERLQREFDAVGFFLSGHPLDGYASILSRLKVQRWATFARQVKQGQASAARLAATVLDRKE 1016

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++T+ G+++G V  S+ + +YEA  F
Sbjct: 1017 RRTKSGTKMGIVQLSDQSGQYEAILF 1042


>gi|260432607|ref|ZP_05786578.1| DNA polymerase III subunit alpha [Silicibacter lacuscaerulensis
            ITI-1157]
 gi|260416435|gb|EEX09694.1| DNA polymerase III subunit alpha [Silicibacter lacuscaerulensis
            ITI-1157]
          Length = 1166

 Score = 1011 bits (2615), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/1057 (48%), Positives = 699/1057 (66%), Gaps = 47/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP F+HL+VH+ YSLLEGA+ L  +    A+   PA+A+TDTNN+F ALEFS  A  
Sbjct: 1    MSSSPRFIHLRVHTEYSLLEGAVRLKKLPGLCASMDMPAVAVTDTNNMFCALEFSVTASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPIIGCQ+D+    +      G  P P  P +VLL  +  GY+ L++L S +Y+ D+
Sbjct: 61   AGIQPIIGCQVDL----SYVTAQPGDKPTPPAP-VVLLAQSETGYENLMKLSSCLYV-DK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q  ++ L  LQ   + GLI LTGG  GP+ R         AE  +     +F DRLY+
Sbjct: 115  GGQLPQVTLDELQR-HSAGLICLTGGPDGPVGRLLQQGQRPAAEALVDRLAAMFPDRLYI 173

Query: 185  NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G D      R  E   V++AY   LPLVATN+  F + + YEAHD L+ +A   
Sbjct: 174  ELQRHPGEDGQPEAERLTERGHVEMAYAKNLPLVATNDVYFPTSDMYEAHDALICIAEGA 233

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q++ R R+T  HY K+  EM ++F+DLPEA+ENTVEIARRC+F+     PILP+F +
Sbjct: 234  YVDQQEGRRRLTAQHYFKSPQEMATLFADLPEAIENTVEIARRCAFMAYKRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E +        ELR +A  GL+ RLA   I      ++Y++RLDFEL +I  M F GYF
Sbjct: 294  DEVE--------ELRRQANEGLQKRLA--VIPHAVSPEEYQKRLDFELGIIESMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK++NIPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKEHNIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIRYVQQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++ A+ D+ R RE    +  VDRLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALKDEPRLREEARNEEVVDRLLTYGQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G  +
Sbjct: 524  RPLDELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLIRKSGRDL 583

Query: 597  ------------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                              +++ IP DD  TY L +   T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  HIAADGTQLYDPPEGAVNEINAIPLDDPATYKLYSAAKTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPTYCEVKNGQRQIQSVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKIKE MD ++ +F +GA+ NG+    A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEAGAAANGVDAKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   +K+  + ++ R+   +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLGLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            PP VN     F V D ++ Y+L A+K VG      +++   DKPF +L DF  RVD KK+
Sbjct: 824  PPCVNRSQATFDVVDGQLVYALGALKNVGVEAMNLVVQGRGDKPFVNLFDFARRVDLKKV 883

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE +  AGA D    +R ++ +SL+ + +Y+  + + + +   ++F  E G    +
Sbjct: 884  GKRPLEMMARAGAFDQLDKNRRRVFESLEQLVQYSAAIHEQKNSNQVSLFG-EAGDDLPE 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-- 995
              L K      + R   E + +GFY SGHPLD Y P L++  +   +E     R      
Sbjct: 943  PRLSKSPDWLPAERLSEEFKAIGFYLSGHPLDDYLPALKRKQVMTLDEVTEKARSGPFVA 1002

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++A +V  +Q++K+ KG+R  +   S+P   YE   F
Sbjct: 1003 KMAGVVAGRQERKSAKGNRFAFAQLSDPTGAYEVTLF 1039


>gi|296447359|ref|ZP_06889286.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b]
 gi|296255138|gb|EFH02238.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b]
          Length = 1150

 Score = 1008 bits (2606), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/1037 (49%), Positives = 690/1037 (66%), Gaps = 25/1037 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+++SL EGAL+++ ++     D+ PA+AITD+NNLF ALEFS+KA  AG+QP
Sbjct: 6    GFVHLHVHTAFSLREGALTISRLIGLAEKDEMPALAITDSNNLFGALEFSEKAAKAGLQP 65

Query: 70   IIGCQLDIDMQDNLK-MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I   QL +D  D  + +T  G+       +IVL+  +  GY  LI L +  +L  +  ++
Sbjct: 66   IPAIQLTVDFGDGTQSLTADGRG------NIVLIAKSEAGYANLIRLATCAWLGPELGET 119

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              + +  L    +E LI LTGG  G +D        + A  RL   + LF  RLYV LQR
Sbjct: 120  PHVTMEQLSASSSE-LIALTGGPEGGLDTLLARGRPEQARARLEALEPLFDGRLYVELQR 178

Query: 189  HRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H G D  R  E Q++ LA+   LPLVA N   F + ED+EAHD L+ +A  TV    +R 
Sbjct: 179  H-GLDHERRVEPQLLDLAFRRGLPLVAANEPFFAAAEDHEAHDALLCIADGTVTGVAERR 237

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---EKECDDI 303
            R++P HY K R EM+++F+DLPEA  +TVEIARR +       PI+PRF+   E   + +
Sbjct: 238  RLSPQHYFKTRKEMLALFADLPEATASTVEIARRVAVRATKRKPIMPRFMRDGEGGGEAL 297

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +  E  ELR +A  GLE RLA    A G   + Y  RL FEL+ I +M+F GYFLIV+DF
Sbjct: 298  EVIETRELRRQAQEGLEARLATHPPAPGQTRETYEARLAFELDTIEKMRFPGYFLIVSDF 357

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++AK   IPVGPGRGSGAGS+ AYALTITD+DPLRF L FERFLNP+RMSMPDFDIDFC
Sbjct: 358  IKYAKSKGIPVGPGRGSGAGSLVAYALTITDLDPLRFGLFFERFLNPERMSMPDFDIDFC 417

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q RR+EVI YV+++YG +RVAQIITFGS  A+  LR VGR L+MP  QVD+L KL+P +P
Sbjct: 418  QSRREEVIEYVRDRYGADRVAQIITFGSFLARGVLRSVGRVLEMPLGQVDKLAKLVPQNP 477

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A PVSL +A+A + + REA   D  V RL +I+  LEGLY +ASTHAAG+VI DRPL  L
Sbjct: 478  AKPVSLAEAVAGELKLREAIAEDGKVARLFKIAGSLEGLYSNASTHAAGVVIADRPLDTL 537

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD +SD+P TQFNMKW ++AGLIKFDFLGLKTLT+L  ++D + +R    DL+ IP
Sbjct: 538  VPLYRDPKSDMPATQFNMKWADEAGLIKFDFLGLKTLTVLATAVDLVRRRVADFDLAAIP 597

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D +TY +L    T+G+FQLES+GMR+AL  M+ D  EDIIALV+LYRPGP+ NI  Y 
Sbjct: 598  LEDPQTYEMLGRGETVGVFQLESAGMRKALVDMRADHFEDIIALVALYRPGPMANIPTYC 657

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K G E+   IHP I+ +LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK
Sbjct: 658  AVKLGDEEADYIHPKIEHILKETFGVIIYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIK 717

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EMD Q+ERF+SGA + G+    A  IF+LLAKFADYGFNKSHAAAYA+I++QTAW K H
Sbjct: 718  AEMDAQRERFVSGAVERGLEPAKASEIFDLLAKFADYGFNKSHAAAYALIAFQTAWFKAH 777

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYY 837
            YPVEFLAASMTL+  N +K+ +F  +AR+  I + PPS+    VDF V     G   I Y
Sbjct: 778  YPVEFLAASMTLDKGNTDKLAEFRNEARRLGIAVEPPSIRRSGVDFDVAPGADGALAIRY 837

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            +L+A+KGVG   A  I+ +  D+PF  L DF  R++ +++N++VLE+L   GA D     
Sbjct: 838  ALSAVKGVGEGQAASIVRSRGDEPFRGLGDFARRINPREVNKKVLENLACCGAFDEMESD 897

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R +++ +++ I   A    ++R      +F    G  S+++ L K     +S + + E  
Sbjct: 898  RARVVGAIETILAAANRTAEDRQLGQNALFG---GGPSEELALPKAEPWTASEKLKREFD 954

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRI 1015
              GF+ +GHPLD +  +L K  +  + E  A ++      RLAA+V+ + +++T+ GS++
Sbjct: 955  AAGFFLTGHPLDSFAGVLAKRRLTRWAEFTAAVKRGATAARLAAVVLDRAERRTKSGSKM 1014

Query: 1016 GWVTFSEPAKEYEANFF 1032
            G V  S+ + +YEA  F
Sbjct: 1015 GIVQLSDDSGQYEAILF 1031


>gi|304321355|ref|YP_003854998.1| DNA polymerase III subunit alpha [Parvularcula bermudensis HTCC2503]
 gi|303300257|gb|ADM09856.1| DNA polymerase III, alpha subunit [Parvularcula bermudensis HTCC2503]
          Length = 1152

 Score = 1003 bits (2594), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/1037 (50%), Positives = 680/1037 (65%), Gaps = 27/1037 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +HSSYSL EGA+ ++  L      Q PA+A+TDTNNLF ALE ++   A G+QP
Sbjct: 4    TFVHLHLHSSYSLAEGAIPVSKALQLAKGHQMPALAVTDTNNLFGALEVAEILSAEGVQP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G +L +  +    + ++       + SIVLL   A G++RL+ L S  +L     ++ 
Sbjct: 64   IPGIELKVATESAEPVRDEAGN----LASIVLLAQNAVGFERLMALSSEAFLTPLEGETT 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + LS + +  TEGLI L+GG+ GPIDR         A   L      F  R YV LQRH
Sbjct: 120  GVPLSAVLQR-TEGLICLSGGALGPIDRLLAEGRCSEALALLDRMAAAFPQRFYVELQRH 178

Query: 190  RGYDRY-------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
              +DR         E  +V+ AY   LP+VATNN  F S  D+ AHD L+ +A    +S+
Sbjct: 179  PHHDRTDQQGRYPEERALVEAAYARSLPIVATNNVYFPSPADHAAHDALLCIAGGRYLSE 238

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             DR  V+ DHY K+  EM  +F DLPEA+E TVE+A+RC+F  + H PILP F      +
Sbjct: 239  VDRRLVSEDHYFKSAEEMSGLFKDLPEAIETTVEVAQRCAFRPRTHQPILPSFAGDLAGE 298

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +      ELR +A  GL  RLA   I      QDY  RL+ EL +I +M F GYFLIVAD
Sbjct: 299  VA-----ELRRQAEEGLAARLAD--IPAAAPHQDYYDRLERELGIIEKMGFPGYFLIVAD 351

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK   IPVGPGRGSGAGS+ AYALTITD+DPLRF LLFERFLNP+R+SMPDFDIDF
Sbjct: 352  FIQWAKSAGIPVGPGRGSGAGSLVAYALTITDLDPLRFHLLFERFLNPERVSMPDFDIDF 411

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRRDEVI YV+++YG +RVAQIITFG LQA+A LRDVGR LQMP+ QVDRLCK++PN+
Sbjct: 412  CQDRRDEVIAYVRDRYGADRVAQIITFGKLQARAVLRDVGRVLQMPFGQVDRLCKMVPNN 471

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PV+L +A+  + RFRE R  DP V  L++ + +LEGLYRHASTHAAG+VIGDRPL++
Sbjct: 472  PANPVTLKEAVDGEPRFREERERDPMVGTLIDTALRLEGLYRHASTHAAGVVIGDRPLTE 531

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVP+YRD RSD+P TQ+NMKW+E AGL+KFDFLGLKTLT++Q++LDFL   G  +D+S I
Sbjct: 532  LVPLYRDSRSDMPATQYNMKWVEPAGLVKFDFLGLKTLTVIQRALDFLKADGTDLDISAI 591

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L     +G+FQLES+GMR  L+G+Q DC+EDIIALVSLYRPGP+DNI  Y
Sbjct: 592  PLDDPATYDMLGRGAAIGVFQLESAGMRATLKGLQADCLEDIIALVSLYRPGPMDNIPTY 651

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK G+E    +HPL++ +LKET GVIIYQEQVMQIAQ+L+GYSL EAD+LRRAMGKK 
Sbjct: 652  IERKAGREPPDYLHPLLEDVLKETYGVIIYQEQVMQIAQILAGYSLGEADLLRRAMGKKK 711

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            KEEMDKQK RF+ GA++ G+S   A  IFEL+AKFA YGFNKSHAAAYA +SYQTA++K 
Sbjct: 712  KEEMDKQKIRFVDGAAEKGVSAAKAEGIFELVAKFAGYGFNKSHAAAYAWVSYQTAYLKA 771

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            ++P  FLAASM+L+    +K+  F  +A++  + + PP VN    DF V    + Y+L A
Sbjct: 772  NHPAAFLAASMSLDQSLTDKLSVFVAEAKRCGVVVEPPCVNESQADFAVSGETLRYALGA 831

Query: 842  IKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +K VG    + +  E +   PF  L D   RVD +K+ +R LE L  AGA D  G  R  
Sbjct: 832  LKNVGAEGMQVLTTERARGGPFRDLYDLAERVDLRKVGKRSLEQLARAGAFDALGVDRAS 891

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQRVL 959
             + + D + +Y+    + R +    +F    +G    +  L +     +  R E E+  L
Sbjct: 892  AMAAADFLLRYSAAAAEERGSAQAGLFGGMAEGESLARPALPQCPPWPNVERLEQERTAL 951

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN----NIRLAAMVVSKQQKKTRKGSRI 1015
            GFY SGHPLD +  +L   G   Y + +A++ G     ++ LA  V    +++++ G   
Sbjct: 952  GFYMSGHPLDDFDSLLAAKGAVSYAD-IASVVGEGESRHVCLAGAVNEVTRRRSKSGKPF 1010

Query: 1016 GWVTFSEPAKEYEANFF 1032
             WV  S+ + ++E   F
Sbjct: 1011 AWVRLSDRSGDFEVTVF 1027


>gi|260425354|ref|ZP_05779334.1| DNA polymerase III subunit alpha [Citreicella sp. SE45]
 gi|260423294|gb|EEX16544.1| DNA polymerase III subunit alpha [Citreicella sp. SE45]
          Length = 1177

 Score = 1003 bits (2592), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/1062 (48%), Positives = 694/1062 (65%), Gaps = 56/1062 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VH+ YSLLEGA+ L  +     A + PA+A+TDTNNLFSALEFS  A  AG+Q
Sbjct: 7    PRFIHLRVHTEYSLLEGAVRLKKLPGLCEAMEMPAVAVTDTNNLFSALEFSVTASGAGVQ 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGCQ+D+   +       G+ P P  P +VLL     GY+ L++L SR+Y+   G + 
Sbjct: 67   PIIGCQVDLRYLN----PAPGERPKPPAP-VVLLAQNERGYENLMKLNSRLYMRHDG-EF 120

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              + L  L+ + ++GLI L+GG  GP+ R    N    A+  L    ++FGDRLYV LQR
Sbjct: 121  PHVLLDELETL-SDGLICLSGGPDGPVGRLLRENHRAAAQVLLTRLHQIFGDRLYVELQR 179

Query: 189  HRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            H G D      R  E   V++AY   LPLVATN+  F     YEAHD ++ +A    V Q
Sbjct: 180  HPGEDGLPEAERLSERGHVEMAYEMGLPLVATNDVYFPKPAMYEAHDAMICIAEGAYVDQ 239

Query: 243  KD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            +  R R+TP HYLK   EMV++F+DLPEA+ENTVEIARRC+F+     PILP+F + E  
Sbjct: 240  QQPRRRLTPQHYLKTPQEMVTLFADLPEAIENTVEIARRCAFMAYRRDPILPKFADDEV- 298

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                    ELR  A  GL+ RLA   I      + Y++RLDFEL +I  M F GYFLIVA
Sbjct: 299  -------AELRRMANEGLQRRLA--VIPHAVTVEQYQERLDFELGIIEGMGFPGYFLIVA 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDID
Sbjct: 350  DFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDID 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRR+EVIRYVQ KYGH++VAQIITFG+L +K A+RDVGR LQMPY QVDRL K+IP 
Sbjct: 410  FCMDRREEVIRYVQEKYGHDKVAQIITFGALLSKMAVRDVGRVLQMPYGQVDRLSKMIPV 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   PVS++ A+ D+ R RE    +  VDRLL   Q++EGL R A THAAG+VI DRP  
Sbjct: 470  EGVKPVSIEKALQDEPRLREEARNEEVVDRLLTYGQQIEGLLRSAGTHAAGVVIADRPTD 529

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV---- 596
            +LVP+Y+D RS++P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + + G  +    
Sbjct: 530  ELVPLYQDPRSEMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKGGRPIHVAA 589

Query: 597  --------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
                           ++LIP DD  TY L     T+ +FQ+ESSGM  AL+ M+P CIED
Sbjct: 590  DGTQLYEPAEGGENQMNLIPLDDERTYRLYADAKTVAVFQVESSGMMDALKRMKPTCIED 649

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            I+ALV+LYRPGP++NI VY   KNG  +I S+HP ID +L ETQG+I+YQEQVMQIAQ++
Sbjct: 650  IVALVALYRPGPMENIPVYCEVKNGLREITSVHPSIDHILAETQGIIVYQEQVMQIAQVM 709

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +GYSL  AD+LRRAMGKKIKE MD ++ +F  GA++NG+ K  A  +F+LL KFA+YGFN
Sbjct: 710  AGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKATEVFDLLEKFANYGFN 769

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821
            KSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  +  +A++   +  +PP V
Sbjct: 770  KSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLATYFYEAKKGLKLDYVPPCV 829

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA---------SADKPFDSLEDFCSRV 872
            N     F V   ++ Y+L A+K VG    R ++E          S DKPF ++ DF  RV
Sbjct: 830  NRSQATFDVDKGKLVYALGALKNVGLEAMRLVVEGRRSVPEDPKSPDKPFVNVFDFARRV 889

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D K++ +R LE L  AG  D    +R ++ +SLD +  Y+  V + + +   ++F  E G
Sbjct: 890  DLKRVGKRPLEMLARAGCFDQLDRNRRRIFESLDALVAYSAAVHEQKHSAQVSLFG-EAG 948

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                +  L        + R   E + +GFY SGHPLD Y P L++  +   +++    RG
Sbjct: 949  DDLPEPRLSPVPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRRDVMLLDDAENKARG 1008

Query: 993  NN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++LA +V  +Q++K+ KG+R  +   S+P+  YE   F
Sbjct: 1009 GTCLVKLAGVVAGRQERKSAKGNRFAFAQLSDPSGAYEVTIF 1050


>gi|315499828|ref|YP_004088631.1| DNA polymerase iii, alpha subunit [Asticcacaulis excentricus CB 48]
 gi|315417840|gb|ADU14480.1| DNA polymerase III, alpha subunit [Asticcacaulis excentricus CB 48]
          Length = 1142

 Score = 1002 bits (2590), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/1038 (49%), Positives = 686/1038 (66%), Gaps = 28/1038 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL+V S+YSLLEGA+   ++    A  + PAIAI D  NLF ALEFSQ     G+
Sbjct: 2    SDGFVHLRVRSAYSLLEGAIKAYDMGKLAAKAKMPAIAICDRANLFGALEFSQVCKDTGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            QPII C L +            KTP     +IVL+V   +GY  L EL S+ YL  +   
Sbjct: 62   QPIIACALPVKGIGGTLSDRWAKTP-----TIVLIVQNEQGYLNLTELSSKAYLDIEATD 116

Query: 128  SVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               +   W + +   EGLI+L+GG  GPI+  F  N    A   L      FGDR Y+ L
Sbjct: 117  EPHVL--WEEVVKRAEGLILLSGGPDGPINPLFKQNQPDEANAALKDMHAAFGDRFYIEL 174

Query: 187  QRHRGYDR------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            QRH G           ES +VQ AY H +PLVATN++ F   + ++AH+ L+ ++ ST +
Sbjct: 175  QRHDGSPHGGIRGDSAESGLVQFAYAHGVPLVATNDAYFADRDMFKAHEALLCISDSTFM 234

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               DR +VT DH+LK    M  +FSDLPEA +NT+EIARRC+F++    PILPRF     
Sbjct: 235  GVADRRKVTKDHWLKPPLLMREVFSDLPEACDNTLEIARRCAFLVSKRDPILPRFDTGAG 294

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                + E+ EL  +A  GL++RL Q  +   +  +DY  RLD E+ VI +M F GYFLIV
Sbjct: 295  ----RSEDEELAFQAREGLKMRLQQ--VEPAFPEEDYWARLDREVGVIQKMGFPGYFLIV 348

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+WAK ++IPVGPGRGSGAGS+ A+ALTITD+DPLRF LLFERFLNP+R+SMPDFDI
Sbjct: 349  SDFIKWAKAHDIPVGPGRGSGAGSLVAWALTITDLDPLRFGLLFERFLNPERVSMPDFDI 408

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YVQ KYG ERVAQIITFG+LQA+A LRD GR +Q+P  QVDRLCK++P
Sbjct: 409  DFCQERREEVITYVQEKYGRERVAQIITFGTLQARAVLRDTGRVMQLPLGQVDRLCKMVP 468

Query: 481  NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            N+PA+P +L QA+  + R REAR  + SV +LL+ + KLEGLYR+ASTHAAGIVIGDR L
Sbjct: 469  NNPANPTTLAQAVEIEPRLREARDEEESVAKLLDTALKLEGLYRNASTHAAGIVIGDRSL 528

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            ++LVP+YRD RSD+P TQFNMKW+E AGL+KFDFLGLKTLT L ++  +L +RG++VD S
Sbjct: 529  TELVPLYRDPRSDIPATQFNMKWVESAGLVKFDFLGLKTLTTLNRAWHYLKKRGLEVDFS 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P DD  TY LL +  ++G+FQLES GMR  L  M+   IE+I AL+SLYRPGP+DNI 
Sbjct: 589  TLPLDDKITYELLASGQSIGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDNID 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y +RK G+  I  +HP ++P+L+ET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGK
Sbjct: 649  TYVDRKFGRADIDMLHPSLEPVLRETYGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGK 708

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K KEEMD QK RFISGA + G+ +  + +IFEL+ KFA YGFNKSHAAAYA ISYQT W+
Sbjct: 709  KKKEEMDLQKARFISGAKEKGVPEKQSDSIFELVNKFAGYGFNKSHAAAYAFISYQTGWL 768

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K ++PVEF AA+M+L++ N +K+  F QDARQF + I PP +N    DF V +  + Y+L
Sbjct: 769  KANHPVEFFAANMSLDITNTDKLAVFYQDARQFGVTIRPPDINRSKADFDVENGEVLYAL 828

Query: 840  AAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AI+ VG      ++    A  PF  + DF  R+D K +N+R +E+L  AGA D    +R
Sbjct: 829  GAIRNVGLEAMHSVVAVREAGGPFKDIFDFLERIDPKAVNKRAIENLARAGAFDSIHPNR 888

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             Q++QS D +  +AQ +   R +   ++F     +      + K S  ++    + E   
Sbjct: 889  AQIIQSADLLIAHAQSMAAERASAQVSLFGTNDSSRPRLPNIPKASGPDA---LDEELSA 945

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKT-RKGSRI 1015
            +GFY SGHPL     + ++  +  Y E++A  +      R+A +V  +Q++ + R G + 
Sbjct: 946  VGFYLSGHPLQDMVDVFKRRNVTLYAEALALAQEGREAFRMAGVVRRRQERASARTGEKF 1005

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V  S+P+ EYE  F P
Sbjct: 1006 AFVNLSDPSGEYEVMFQP 1023


>gi|99080341|ref|YP_612495.1| DNA polymerase III subunit alpha [Ruegeria sp. TM1040]
 gi|99036621|gb|ABF63233.1| DNA polymerase III alpha subunit [Ruegeria sp. TM1040]
          Length = 1166

 Score = 1001 bits (2589), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1054 (48%), Positives = 699/1054 (66%), Gaps = 49/1054 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+ H+ YSLLEGA+ L  + D   A+Q PAIAITDTN++F+ALEFS     AGIQ
Sbjct: 5    PRFIHLRTHTEYSLLEGAVRLKKLPDLCKANQMPAIAITDTNSMFAALEFSVTLSGAGIQ 64

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTP-FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQ+D+      + ++ G+ P FP    +VLL     GY+ L+ L S +Y+ D G Q
Sbjct: 65   PIIGCQVDL----TFEKSDPGEKPKFPA--PVVLLAQDETGYEHLMRLSSCLYV-DNGGQ 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              ++ L  L E    GLI LTGG  GPI +         AE  +   K +F DRLYV LQ
Sbjct: 118  LPQVSLEEL-EANAGGLICLTGGPEGPIGKLLQQGQRPAAETLMQRLKGMFPDRLYVELQ 176

Query: 188  RHRGYDRYRESQV------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            RH G D   E++       V++AY  +LPLVATN+  F   E YEAHD L+ +A    V 
Sbjct: 177  RHPGEDGQPEAETLTERGHVEMAYAMDLPLVATNDVYFPKTEMYEAHDALICIAEGAYVD 236

Query: 242  QKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            Q + R R+T  HY K++ EM+++F+DLPEA+ENTVEIA+RC+F+     PILP+F + E 
Sbjct: 237  QAEPRRRLTAQHYFKSQEEMIALFADLPEAIENTVEIAQRCAFMAYRRDPILPKFADDEV 296

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D        ELR +A  GL+ RLA   I      + Y++RLDFEL +I  M F GYFLIV
Sbjct: 297  D--------ELRRQANEGLQQRLA--VIPHAVPVEKYQERLDFELGIIESMGFPGYFLIV 346

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFI+W K+  IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDI
Sbjct: 347  ADFIKWGKEQGIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDI 406

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMP+ QVDRL K+IP
Sbjct: 407  DFCMDRREEVIKYVQQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPFGQVDRLSKMIP 466

Query: 481  NDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +   PVS++ A+ D+ R  E    +P VDRLL   Q++EGL R+ASTHAAG+VIGDRPL
Sbjct: 467  VEGVKPVSIEKALQDEPRLAEEARNEPVVDRLLTYGQQVEGLLRNASTHAAGVVIGDRPL 526

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-------- 591
              LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT+++ ++  + +        
Sbjct: 527  DALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIENAMKLIFKSGRDLHIG 586

Query: 592  ----------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
                       G +  ++LIP DD  TY+L +   T+ +FQ+ES+GM  AL+ M+P CIE
Sbjct: 587  ADGTELYEPAEGAENQINLIPLDDEVTYNLYSRAKTVAVFQVESTGMMDALKRMKPTCIE 646

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            DI+ALV+LYRPGP++NI VY   KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQIAQ+
Sbjct: 647  DIVALVALYRPGPMENIPVYCEVKNGQREITSVHPLIDHILEETQGIIVYQEQVMQIAQV 706

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            ++GYSL  AD+LRRAMGKKIKE MD ++ +F  GA++NG+ K  A  +F+LL KFA+YGF
Sbjct: 707  MAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFANYGF 766

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPS 820
            NKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   EK+  + ++ ++   +  + P 
Sbjct: 767  NKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTEKLAVYFEEVKKGLQLPYVAPD 826

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
            +N     F V D  + Y+L A+K VG      I+ A  DKPF +L DF  RVD K++ +R
Sbjct: 827  INRSLATFDVVDGELVYALGALKNVGVEAMNMIVTARGDKPFVNLYDFARRVDLKRVGKR 886

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE L  AGA D    +R ++ +SL+ + +Y+  +++ + +   ++F  E G    +  +
Sbjct: 887  PLEMLARAGAFDVLDPNRRRVFESLEGLVQYSAAIQEQKNSNQVSLFG-EAGDDLPEPRM 945

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNI-RLA 998
                    + R   E + +GFY +GHPLD Y P L++  +   +E +A   RG  + ++A
Sbjct: 946  AGVPDWLPAERLSEEFKAIGFYLTGHPLDDYMPALKRKDVMTLDEVMAKAERGPFMAKMA 1005

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +V  +Q++K+ +G+R  +   S+    YE   F
Sbjct: 1006 GVVAGRQERKSARGNRFAFAQLSDTTGAYEVTIF 1039


>gi|126463991|ref|YP_001045104.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides ATCC 17029]
 gi|126105802|gb|ABN78332.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides ATCC
            17029]
          Length = 1163

 Score =  999 bits (2583), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/1062 (49%), Positives = 685/1062 (64%), Gaps = 56/1062 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+VH+ YSLLEGA+ +  ++    A   PA+A+TDTN +F+ALEFS  A  
Sbjct: 1    MSNAPRFIHLRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPI+GCQ+ +  +        G+ P P  P +VLL  T  GY  L++L S +YL  +
Sbjct: 61   AGIQPIVGCQVSVAYE----TAALGERPKPPAP-VVLLAQTEAGYGNLMKLSSCLYLGKE 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G    ++ LS L+  G EGLI LTGG  GP+ R         AE  L     ++  RLYV
Sbjct: 116  GALP-QVTLSELERHG-EGLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYV 173

Query: 185  NLQRHRG-------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             LQRH G        +R  E   V+LAY   LPLVATN+  F   E YEAHD L+ +A  
Sbjct: 174  ELQRHPGEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEG 233

Query: 238  TVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V Q   R R+TP HY K+ +EMV++F+DLPEA+ENTVEIARRC+F      PILPRF 
Sbjct: 234  AYVDQVAPRRRLTPQHYFKSEAEMVALFADLPEAVENTVEIARRCAFKAAKRPPILPRFA 293

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            + E +        ELR +A  GL  RLA   I      +DY  RL FEL +I +M F GY
Sbjct: 294  DDEVE--------ELRRQAKEGLAARLA--VIPHAAPVEDYEARLAFELGIIEQMGFPGY 343

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI+W K N IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 344  FLIVADFIKWGKANGIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMP 403

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL 
Sbjct: 404  DFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463

Query: 477  KLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K+IP +   PVS+Q A+AD+ R REA   +  V RLL+   ++EGL R+ASTHAAG+VIG
Sbjct: 464  KMIPVEGVKPVSIQKALADEPRLREAAKTEEVVKRLLDYGMQVEGLLRNASTHAAGVVIG 523

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------ 589
            DRPL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D +      
Sbjct: 524  DRPLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIRGTGRP 583

Query: 590  ------------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
                           G + D+  IP +D  TY L     T+ +FQ+ESSGM  AL  M+P
Sbjct: 584  LHMAADGRVLYDPPPGAENDIGHIPLEDKATYELYAQAKTVAVFQVESSGMMDALRRMKP 643

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             CIEDI+ALV+LYRPGP++NI VY   K+G   + S+HP IDP+LKETQG+I+YQEQVMQ
Sbjct: 644  TCIEDIVALVALYRPGPMENIPVYCEVKHGLRDLESLHPTIDPILKETQGIIVYQEQVMQ 703

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKF 756
            IAQ++ GY+L  AD+LRRAMGKKI EEM K++ +FI GA K +GI    A  +F+LL KF
Sbjct: 704  IAQVMGGYTLGGADLLRRAMGKKIAEEMAKERPKFIEGAKKTHGIDAKKAGEVFDLLEKF 763

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M  ++   +K+  + ++  +  I+ 
Sbjct: 764  ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRT 823

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            + P VN     F V D  + Y+L A+K VG    R I+EA  D+PF +L D   RV+ K+
Sbjct: 824  VAPCVNASLATFTVRDGAVVYALGALKNVGVEAMRLIVEARGDRPFATLFDMARRVELKR 883

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            + +R LE L  AGA D    +R ++ ++LD +  Y+  + + R +   ++F  E G    
Sbjct: 884  IGKRPLEMLARAGAFDALDRNRARVFEALDALVAYSAAIHEARNSSQVSLFG-EAGADIP 942

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-----R 991
            +  L          R   E + +GFY SGHPLD Y   L++  +     ++A +     R
Sbjct: 943  EPRLPSRDDWLPVERLAQEHQAIGFYLSGHPLDDYMGALKRRNVT----TLAALTDLAQR 998

Query: 992  GNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            G  + +LA  V S+Q+KK+ KG+R  +V  S+P   YE   F
Sbjct: 999  GPMVAKLAGAVSSRQEKKSAKGNRFAFVQLSDPTGLYECTVF 1040


>gi|259417587|ref|ZP_05741506.1| DNA polymerase III subunit alpha [Silicibacter sp. TrichCH4B]
 gi|259346493|gb|EEW58307.1| DNA polymerase III subunit alpha [Silicibacter sp. TrichCH4B]
          Length = 1166

 Score =  999 bits (2582), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1058 (47%), Positives = 702/1058 (66%), Gaps = 49/1058 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP F+HL+ H+ YSLLEGA+ L  + D  +++Q PAIA+TDTN++F+ALEFS     
Sbjct: 1    MTASPRFIHLRTHTEYSLLEGAVRLKKLPDLCSSNQMPAIAVTDTNSMFAALEFSVTLSG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTP-FPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            AGIQPIIGCQ+D+      + ++ G+ P FP    +VLL     GY+ L+ L S +Y+ +
Sbjct: 61   AGIQPIIGCQVDL----TFEKSDPGEKPKFPA--PVVLLAQNEAGYEHLMRLSSCLYV-N 113

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             G Q  ++ L  L E  + GLI LTGG  GPI +         AE  +   K++F DRLY
Sbjct: 114  NGGQLPQVSLEEL-EANSAGLICLTGGPEGPIGKLLQQGQRPAAEALMQRLKEMFPDRLY 172

Query: 184  VNLQRHRGYDRYRESQV------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            V LQRH G D   E++       V++AY  +LPLVATN+  F   E YEAHD L+ +A  
Sbjct: 173  VELQRHPGEDGQPEAETLTERGHVEMAYAMDLPLVATNDVYFPKTEMYEAHDALICIAEG 232

Query: 238  TVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V Q + R R+T  HY K++ EM+++F+DLPEA+ENTVEIA+RC+F+     PILP+F 
Sbjct: 233  AYVDQAEPRRRLTAQHYFKSQEEMIALFADLPEAIENTVEIAQRCAFMAYRRDPILPKFA 292

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            + E D        ELR +A  GL+ RLA   I      + Y++RLDFEL +I  M F GY
Sbjct: 293  DDEVD--------ELRRQANEGLQQRLA--VIPHAVPVEKYQERLDFELGIIESMGFPGY 342

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI+W K+  IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMP
Sbjct: 343  FLIVADFIKWGKEQGIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMP 402

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMP+ QVDRL 
Sbjct: 403  DFDIDFCMDRREEVIKYVQQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPFGQVDRLS 462

Query: 477  KLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K+IP +   PVS++ A+ D+ R  E    +P VDRLL   Q++EGL R+ASTHAAG+VIG
Sbjct: 463  KMIPVEGVKPVSIEKALQDEPRLAEEARNEPVVDRLLTYGQQVEGLLRNASTHAAGVVIG 522

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---- 591
            DRPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT+++ ++  + +    
Sbjct: 523  DRPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIENAMKLIFKSGRD 582

Query: 592  --------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
                           G +  ++LIP DD  TY+L +   T+ +FQ+ES+GM  AL+ M+P
Sbjct: 583  LHIGADGTELYEPAEGAENQINLIPLDDEVTYNLYSRAKTVAVFQVESTGMMDALKRMKP 642

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             CIEDI+ALV+LYRPGP++NI VY   KNG  KI S+HPLID +L+ETQG+I+YQEQVMQ
Sbjct: 643  TCIEDIVALVALYRPGPMENIPVYCEVKNGLRKITSVHPLIDHILEETQGIIVYQEQVMQ 702

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ+++GYSL  AD+LRRAMGKKIKE MD ++ +F  GA++NG+ K  A  +F+LL KFA
Sbjct: 703  IAQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFA 762

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQI 816
            +YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   EK+  + ++ ++   +  
Sbjct: 763  NYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTEKLAIYFEEVKKGLQLPY 822

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
              P +N     F V D  + Y+L A+K VG      I+ A  D+PF +L DF  RVD K+
Sbjct: 823  AAPDINRSLATFDVVDGELIYALGALKNVGVDAMNLIVTARGDQPFVTLYDFARRVDLKR 882

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            + +R LE L  AGA D    +R ++ +SL+ + +Y+  +++ + +   ++F  E G    
Sbjct: 883  VGKRPLEMLARAGAFDVLDSNRRRVFESLEGLVQYSAAIQEQKNSNQVSLFG-EAGDDLP 941

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNI 995
            +  +        + R   E + +GFY +GHPLD Y P L++  +   +E +A   RG  +
Sbjct: 942  EPRMAGVPDWLPAERLSEEFKAVGFYLTGHPLDDYMPALKRKDVMTLDEVMAKAERGPFM 1001

Query: 996  -RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++A +V  +Q++K+ +G+R  +   S+    YE   F
Sbjct: 1002 AKMAGVVAGRQERKSARGNRFAFAQLSDTTGAYEVTIF 1039


>gi|260576275|ref|ZP_05844267.1| DNA polymerase III, alpha subunit [Rhodobacter sp. SW2]
 gi|259021543|gb|EEW24847.1| DNA polymerase III, alpha subunit [Rhodobacter sp. SW2]
          Length = 1144

 Score =  998 bits (2581), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/1041 (49%), Positives = 684/1041 (65%), Gaps = 38/1041 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SP F+HL+VH+ +SLLEGA+ +  ++    A   PA+AITDTNN+F+ALEFS  A +AG+
Sbjct: 3    SPRFIHLRVHTEHSLLEGAVPVQKLIGLCVAQSMPAVAITDTNNMFAALEFSTYAASAGV 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            QPIIGCQ+ +           G+ P    P IVLL  +  GY  L++L + +Y+   G Q
Sbjct: 63   QPIIGCQVSLAHDP----AGPGERPRAAAP-IVLLAQSEAGYLNLMKLNTCLYIGKAG-Q 116

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              ++ ++ L      GLI LTGG  GP+ R         A+  L     ++  RLY+ LQ
Sbjct: 117  LPQLTVAELAA-HARGLICLTGGPDGPLGRFLQAGQRPKAQALLEKLAAIYPGRLYIELQ 175

Query: 188  RHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            RH G        +R  E  +V++AY   LPLVATN+  F     YEAHD L+ +A    V
Sbjct: 176  RHPGAGEQLPEAERASERGLVEMAYAMGLPLVATNDVYFPKAAMYEAHDALLCIAEGAYV 235

Query: 241  SQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             Q+  R R+TP HY K  +EM ++F+DLPEALEN+VEIARRC+F +    PILP+F + E
Sbjct: 236  DQQGPRRRLTPQHYFKTEAEMATLFADLPEALENSVEIARRCAFKVAKRDPILPKFADDE 295

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +        ELR +A  GL  RLA   I       +Y  RL FEL +I +MKF GYFLI
Sbjct: 296  VE--------ELRRQAGEGLAARLA--IIPHAVPVAEYEARLAFELGIIEKMKFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI+WAK   IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFIKWAKGQGIPVGPGRGSGAGSLVAYALTITDLDPLRYKLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC DRR EVI YVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL K+I
Sbjct: 406  IDFCMDRRQEVIEYVQQKYGRDKVGQIITFGALLSKAAIRDVGRVLQMPYGQVDRLSKMI 465

Query: 480  PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P +   PVS+ +A+AD+ R REA   +  V RLL+  Q++EGL R+ASTHAAG+VIGDRP
Sbjct: 466  PVEGVKPVSITKALADEPRLREAA-KEEVVARLLDYGQQIEGLLRNASTHAAGVVIGDRP 524

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            L +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q +L+ LAQRG+ +D+
Sbjct: 525  LDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNALELLAQRGIDIDI 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            SLIP DD +TY L  +  T+ +FQ+ESSGM  AL  M+P CIEDI+ALV+LYRPGP++NI
Sbjct: 585  SLIPLDDAKTYELYASARTVAVFQVESSGMMDALRRMKPTCIEDIVALVALYRPGPMENI 644

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y   KNG  +I SIHP ID +L ETQG+I+YQEQVM+I Q+++GYSL  AD+LRRAMG
Sbjct: 645  PTYCEVKNGLRQIESIHPTIDHILAETQGIIVYQEQVMEIGQVMAGYSLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KKI  EM K++ +FI GA+K +G+SK  A  +F+LL KFA+YGFNKSHAAAYAV+SYQTA
Sbjct: 705  KKIAAEMAKERPKFIEGAAKTHGVSKEKAGEVFDLLEKFANYGFNKSHAAAYAVVSYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K ++PVEF+A  M  ++   +K+  + ++  +  I+ + P VN     F V D  + Y
Sbjct: 765  WLKANHPVEFMAGVMNCDIHLTDKLAVYKREVDKLGIRTVAPCVNASLASFSVRDGAVVY 824

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            +L A+K VG    + I EA   KPF SL D   RVD K++ +R LE L  AGA D    +
Sbjct: 825  ALGALKNVGVEAMKLITEARGAKPFASLFDLARRVDLKRIGKRPLEMLARAGAFDVLDSN 884

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFSVENSSVRFEN 954
            R ++  +LD +  Y+  + + R +   ++F        +       +   VE    R   
Sbjct: 885  RARVFDALDALGSYSAAIHEARNSNQVSLFGEAGADLPEPRLPFRDDWLPVE----RLSQ 940

Query: 955  EQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRK 1011
            E + +GFY SGHPLD Y  P+ RK  +  +E  +     + +  ++A  V S+Q+KK+ K
Sbjct: 941  EHQAIGFYLSGHPLDDYMGPLKRKQVMTLHELHLRATENSPLIAKIAGSVASRQEKKSAK 1000

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G+R  +V+ S+P   YE   F
Sbjct: 1001 GNRFAFVSLSDPTGLYEVTVF 1021


>gi|221369558|ref|YP_002520654.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides KD131]
 gi|221162610|gb|ACM03581.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides KD131]
          Length = 1163

 Score =  997 bits (2578), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/1062 (48%), Positives = 685/1062 (64%), Gaps = 56/1062 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+VH+ YSLLEGA+ +  ++    A   PA+A+TDTN +F+ALEFS  A  
Sbjct: 1    MSNAPRFIHLRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPI+GCQ+ +  +        G+ P P  P +VLL  T  GY  L++L S +YL  +
Sbjct: 61   AGIQPIVGCQVSVAYE----TVALGERPKPPAP-VVLLAQTETGYGNLMKLSSCLYLGKE 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G    ++ LS L+  G EGLI LTGG  GP+ R         AE  L     ++  RLYV
Sbjct: 116  GALP-QVTLSELERHG-EGLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYV 173

Query: 185  NLQRHRG-------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             LQRH G        +R  E   V+LAY   LPLVATN+  F   E YEAHD L+ +A  
Sbjct: 174  ELQRHPGEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEG 233

Query: 238  TVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V Q   R R+TP HY K+ +EMV++F+DLPEA+EN+VEIARRC+F      PILPRF 
Sbjct: 234  AYVDQVAPRRRLTPQHYFKSEAEMVALFADLPEAVENSVEIARRCAFKAAKRPPILPRFA 293

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            + E +        ELR +A  GL  RLA   I      +DY  RL FEL +I +M F GY
Sbjct: 294  DDEVE--------ELRRQAKEGLAARLA--VIPHAAPVEDYEARLAFELGIIEQMGFPGY 343

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI+W K N IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 344  FLIVADFIKWGKANGIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMP 403

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL 
Sbjct: 404  DFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463

Query: 477  KLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K+IP +   PVS+Q A+AD+ R REA   +  V RLL+   ++EGL R+ASTHAAG+VIG
Sbjct: 464  KMIPVEGVKPVSIQKALADEPRLREAAKTEEVVKRLLDYGMQVEGLLRNASTHAAGVVIG 523

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------ 589
            DRPL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D +      
Sbjct: 524  DRPLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIRGTGRP 583

Query: 590  ------------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
                           G + D+  IP +D  TY L     T+ +FQ+ESSGM  AL  M+P
Sbjct: 584  LHMAADGRVLYDPPPGAENDIGHIPLEDKATYELYAQAKTVAVFQVESSGMMDALRRMKP 643

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             CIEDI+ALV+LYRPGP++NI VY   K+G   + S+HP IDP+LKETQG+I+YQEQVMQ
Sbjct: 644  TCIEDIVALVALYRPGPMENIPVYCEVKHGLRDLESLHPTIDPILKETQGIIVYQEQVMQ 703

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKF 756
            IAQ++ GY+L  AD+LRRAMGKKI EEM K++ +FI GA K +GI    A  +F+LL KF
Sbjct: 704  IAQVMGGYTLGGADLLRRAMGKKIAEEMAKERPKFIEGAKKTHGIDAKKAGEVFDLLEKF 763

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M  ++   +K+  + ++  +  I+ 
Sbjct: 764  ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRT 823

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            + P VN     F V D  + Y+L A+K VG    R I+EA  D+PF +L D   RV+ K+
Sbjct: 824  VAPCVNASLATFTVRDGAVVYALGALKNVGVEAMRLIVEARGDRPFATLFDMARRVELKR 883

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            + +R LE L  AGA D    +R ++ ++LD +  Y+  + + R +   ++F  E G    
Sbjct: 884  IGKRPLEMLARAGAFDALDRNRARVFEALDALVAYSAAIHEARNSSQVSLFG-EAGADIP 942

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-----R 991
            +  L          R   E + +GFY SGHPLD Y   L++  +     ++A +     R
Sbjct: 943  EPRLPSRDDWLPVERLAQEHQAIGFYLSGHPLDDYMGALKRRNVT----TLAALTDLAQR 998

Query: 992  GNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            G  + +LA  V S+Q+KK+ KG+R  +V  S+P   YE   F
Sbjct: 999  GPMVAKLAGAVSSRQEKKSAKGNRFAFVQLSDPTGLYECTVF 1040


>gi|163795645|ref|ZP_02189611.1| DNA polymerase III, alpha subunit [alpha proteobacterium BAL199]
 gi|159179244|gb|EDP63777.1| DNA polymerase III, alpha subunit [alpha proteobacterium BAL199]
          Length = 1162

 Score =  996 bits (2576), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/1043 (49%), Positives = 692/1043 (66%), Gaps = 26/1043 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS YSL EGA+    ++     ++ PA+++TD+ NLF ALEFS  A   G+QPI
Sbjct: 6    FIHLRVHSVYSLAEGAIHAKQLVKLAKQNRMPAVSMTDSGNLFGALEFSVTAAGEGVQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            +G QL +                  VP   ++LLV +  GY+ L+ +VSR Y+   G++ 
Sbjct: 66   VGVQLAVRRPAEPDRRGLRVVAGRDVPPDQLLLLVQSEVGYRNLMGIVSRAYMETSGEEE 125

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++ L  L E  TEGLI LT G  G + R         AE  L   ++LF DRLYV LQR
Sbjct: 126  PQVALDEL-EGHTEGLIALTAGLRGGMGRLLLEGRDSDAESVLQHLQRLFPDRLYVELQR 184

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D  R E +++ LAY  ++PLVATN   F  E+ +EA DVL+ +A ST +    R R
Sbjct: 185  HFLEDENRIEGRLIDLAYARKIPLVATNEVFFADEDMHEAQDVLLCIAGSTTIGNPKRRR 244

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +TP H  K+  EM  +F+DLPEA++NTV +ARRC+++ +   PILPRF E E     + E
Sbjct: 245  LTPHHRFKSSQEMRELFADLPEAVDNTVVVARRCAYMPRKLDPILPRF-ETEGG---RSE 300

Query: 308  ENELRNKAVAGLEVRLAQGAIAK----GYHAQ---DYRQRLDFELNVIARMKFSGYFLIV 360
              ELR +A AGL  RL    ++       HA+    Y  RL  EL VI +M F GYFLIV
Sbjct: 301  AEELRAQAEAGLRARLDAHVLSAETPDDKHAEITRPYWDRLAMELGVIEQMGFPGYFLIV 360

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+WAK  NIPVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFDI
Sbjct: 361  SDFIKWAKAQNIPVGPGRGSGAGSLVAYSLLITDLDPLRWGLLFERFLNPERVSMPDFDI 420

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQDRRDEVIRYVQ+KYG +RVAQIITFG LQA+AALRDVGR L+MPY QVDR+CKL+P
Sbjct: 421  DFCQDRRDEVIRYVQDKYGRDRVAQIITFGKLQARAALRDVGRVLEMPYGQVDRICKLVP 480

Query: 481  NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            N+PA+PV+L QA+  +   R  R AD +V  L+ I+ +LEG+YR++STHAAG+VIGDRPL
Sbjct: 481  NNPANPVTLAQAVTTEEELRRQRNADENVANLIRIALQLEGMYRNSSTHAAGVVIGDRPL 540

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            S+LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+LQ+++D L + G+ +DL+
Sbjct: 541  SELVPLYRDPRSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLQRAVDLLKEGGIALDLA 600

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP +D  TY +L    + G+FQLESSGMR  L  ++PD  EDIIALV+LYRPGP+ NI 
Sbjct: 601  KIPLEDEATYTMLARGESTGVFQLESSGMRDVLRRLRPDRFEDIIALVALYRPGPMANIP 660

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y   K+G E+   +HP ++P+L ET G++IYQEQV Q AQLLSGY+L  AD+LRRAMGK
Sbjct: 661  KYIACKHGDEQPDYMHPKLEPVLNETFGIMIYQEQVQQAAQLLSGYTLGGADLLRRAMGK 720

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KIKEEMD Q+ERF+SGA  NG+ +  A  IF+ +A FA YGFNKSHAAAYA+++YQTA++
Sbjct: 721  KIKEEMDAQRERFVSGAVDNGVDQGQASGIFDQIAAFAGYGFNKSHAAAYALVAYQTAYL 780

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNR 834
            K ++PVEFLAASMT +M N +K+  F Q+ ++  I ++PP +N    DF V     G   
Sbjct: 781  KANHPVEFLAASMTYDMGNTDKLNTFRQELQKLRIPLLPPDINRSRRDFAVERMPDGTMA 840

Query: 835  IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+LAA+K VG      ++ A  AD+ F SL DF  R D +++N+R+LE+LV AGA D 
Sbjct: 841  IRYALAAVKNVGGAAMDALVSARDADRAFKSLGDFADRADPQQVNKRLLENLVKAGAFDG 900

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R +L +SL+ + ++       R +   N+FA + G    ++ L+         R +
Sbjct: 901  LHPNRAELFESLETVVRHVSAAASERGSSQVNLFAVDGGREPTRLRLKDRPDWPPMERLK 960

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGI----KGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             E   LGFY S HPLD Y   L ++ +    + + E+ A      + LA +VV KQ + +
Sbjct: 961  EEFDALGFYLSAHPLDAYAESLGRLSVVPSDRAFAETRAKGGSTRLTLAGIVVGKQIRTS 1020

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
            + G+R  +V  ++    +E   F
Sbjct: 1021 KSGNRFAFVQLTDRTGVFEVTLF 1043


>gi|197105245|ref|YP_002130622.1| DNA polymerase III, alpha subunit [Phenylobacterium zucineum HLK1]
 gi|196478665|gb|ACG78193.1| DNA polymerase III, alpha subunit [Phenylobacterium zucineum HLK1]
          Length = 1148

 Score =  995 bits (2573), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1032 (48%), Positives = 695/1032 (67%), Gaps = 24/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+V S+YSLLEGA+  + I D   A   PA+A+ D  NLF ALEFS     +G+QP
Sbjct: 12   GFVHLRVRSAYSLLEGAIKADKIGDLAKAWGMPAVALADRANLFGALEFSVATKGSGVQP 71

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC L +    +       KTP     +I+LL  + +GY  L EL S  YL     +  
Sbjct: 72   IIGCALPVSGIGDRPPERWAKTP-----TIMLLAQSEQGYLNLCELSSAAYLDVDASEEP 126

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR--LLTFKKLFGDRLYVNLQ 187
             +  + + E  +EGLI+L+GG  GP+D    F + +V E R  L   K+ FG R YV LQ
Sbjct: 127  HVPWTKVVER-SEGLILLSGGPDGPVDH--LFAAGKVKEGRAALAEMKRAFGSRFYVELQ 183

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH    +   E ++V  AY  ++PLVATN+  F + + ++AHD L+ +A  + V Q +R 
Sbjct: 184  RHGLPAEAAAEGELVAFAYDEDVPLVATNDVYFKNPQMHQAHDALLCIADGSFVGQDERR 243

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            RVT +H+ K+ ++M ++F+DLPEA +NT++IARRC+F++    P+LP F      D  + 
Sbjct: 244  RVTAEHWFKSPADMRALFADLPEACDNTLDIARRCAFMVHKRDPLLPSFT-----DEGRS 298

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E  EL ++A  GL  R+A G  A  + A++Y  RL+ E+ VI +M F GYFLIV+DFI+W
Sbjct: 299  EAEELAHQAREGLRARMAAGQ-ANAFPAEEYEARLEREIQVITQMGFPGYFLIVSDFIKW 357

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGSGAGS+ AYALTIT++DPLR+ LLFERFLNP+R+SMPDFDIDFCQ+R
Sbjct: 358  AKARGIPVGPGRGSGAGSLVAYALTITNLDPLRYGLLFERFLNPERVSMPDFDIDFCQER 417

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI YVQ +YG ++VAQIITFG+LQA+A LRDVGR +Q+P  QVDRL K++P +PA+P
Sbjct: 418  REEVINYVQQRYGRDKVAQIITFGTLQARAVLRDVGRVMQLPLGQVDRLAKMVPANPANP 477

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+L QA+  + R +E    D +V RLL+++ +LEGLYR+ASTHAAG+VIGDRPL+QL P+
Sbjct: 478  VTLAQALDIEPRLKEEAARDEAVARLLDVALQLEGLYRNASTHAAGVVIGDRPLTQLTPL 537

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD RS+LP TQFNMKW+E AGL+KFDFLGLKTLT++ +++  L +RG  VD++ +P DD
Sbjct: 538  YRDPRSELPATQFNMKWVESAGLVKFDFLGLKTLTVIDRAVKHLEKRGAAVDMNALPLDD 597

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              TY L++   T+G+FQLE  GMR  L  ++P  IED+ A+VSLYRPGP+DNI  + + K
Sbjct: 598  GPTYELMSNAQTIGVFQLEGQGMRDTLRQLRPSSIEDVTAIVSLYRPGPMDNIPAFVDCK 657

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G++ I ++HPL++ +LKET G+I+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKK KEEM
Sbjct: 658  FGRKPIDTLHPLLEGVLKETYGIIVYQEQVMQIAQILAGYSLGEADLLRRAMGKKKKEEM 717

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            + Q+ RF+SGA   G+    +  IF+L+ KFA YGFNKSHAAAYAV+SYQTAW+K + PV
Sbjct: 718  EAQRARFVSGAEAKGVPAAQSGAIFDLVDKFAGYGFNKSHAAAYAVVSYQTAWLKANAPV 777

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF AASM+L++ N +K+  F QDA++F ++I PP VN    DF+V +  + Y+L AI+ V
Sbjct: 778  EFFAASMSLDIANTDKLSVFYQDAKRFGVKIRPPCVNRSGADFEVENGEVLYALGAIRNV 837

Query: 846  GTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            G     H+++   +  PF  + DF  R+D K++N+R  E+L  AGA D    +R +LL S
Sbjct: 838  GLQAMEHVVQVRREGGPFRDIFDFVERIDPKQVNKRTFETLARAGAFDAIHPNRAELLAS 897

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             D +  + Q +  +R     ++F  +  G    ++T  +      + R + E   +GFY 
Sbjct: 898  ADTLVGHGQALAADRAEGKVSLFGDDLSGGHRPRLT--RAEPWTPTERLDEELAAVGFYL 955

Query: 964  SGHPLDVYKPILRKMGIKGYEESVA-TIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            SGHPLD     LR+       +++A  + G   +R+A ++  KQ++ +R G +  +VTFS
Sbjct: 956  SGHPLDDMVEALRRKRTDLLTDAIARAVAGAEALRMAGVIRRKQERPSRTGEKFAFVTFS 1015

Query: 1022 EPAKEYEANFFP 1033
            +P  EYE  F P
Sbjct: 1016 DPTGEYEVLFPP 1027


>gi|126728427|ref|ZP_01744243.1| DNA polymerase III subunit alpha [Sagittula stellata E-37]
 gi|126711392|gb|EBA10442.1| DNA polymerase III subunit alpha [Sagittula stellata E-37]
          Length = 1166

 Score =  993 bits (2567), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/1054 (48%), Positives = 686/1054 (65%), Gaps = 48/1054 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+ H+ YSLLEGAL L  +    A    PA+A+TDTNNLF+ALEFS  A  AG+Q
Sbjct: 4    PRFIHLRTHTEYSLLEGALRLKKLPGLCADMGMPAVAVTDTNNLFAALEFSVGASGAGVQ 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGCQ+D+   +       G+   P  P +VLL  T  GY+ L++L S +YL  +  + 
Sbjct: 64   PIIGCQIDLRYFEQ----APGERIKPPAP-VVLLAQTERGYEHLMKLNSCLYL-RRDNEL 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              + L  L E  +E +I L+GG  GP+ R    NS   A+  +     +F DRLYV LQR
Sbjct: 118  AHVTLDEL-EAHSEDVICLSGGPDGPVGRLLRTNSRAAAQTLMTRLHAIFEDRLYVELQR 176

Query: 189  HRGYD-------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            H G D          E   V++AY   LPLVATN+  F     YEAHD ++ +A    V 
Sbjct: 177  HPGEDGTPPEAEHLTERGFVEMAYEMGLPLVATNDVYFPKSSMYEAHDAMICIAEGAYVD 236

Query: 242  QKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            Q++ R R+TP HYLK   EM  +F+DLPEALENTVEIA+RC+F+     PILPRF + E 
Sbjct: 237  QQEPRRRLTPQHYLKTPQEMAVLFADLPEALENTVEIAKRCAFMAYRRDPILPRFADDEV 296

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                     ELR  A  GL+ RLA   I      +DY++RLDFEL +I  M F GYFLIV
Sbjct: 297  --------TELRRMANEGLQARLA--VIPHAVSVEDYQKRLDFELGIIEGMGFPGYFLIV 346

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFIQWAK  +IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDI
Sbjct: 347  ADFIQWAKDQDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDI 406

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC DRR+EVIRYVQ+KYGH+RV QIITFG+L +KAA+RD+GR LQMPY QVDRL K+IP
Sbjct: 407  DFCMDRREEVIRYVQDKYGHDRVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSKMIP 466

Query: 481  NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +   PVS+ QA+ D+ R  E    +  VDRLL+   ++EGL R A THAAG+VI DRP 
Sbjct: 467  VEGVKPVSIEQALRDEPRLAEEAKNEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIADRPT 526

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG----VK 595
             +LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G    V 
Sbjct: 527  DELVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFKSGRPLHVA 586

Query: 596  VD--------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
             D              ++LIP DD  TY L  +  T+ +FQ+ESSGM  AL+ M+P CIE
Sbjct: 587  ADGTQLYEPPEGAENQINLIPLDDKVTYKLYASAKTVAVFQVESSGMMDALKRMKPTCIE 646

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            DI+ALV+LYRPGP++NI VY   KNG  +I S+HP ID +L ETQG+I+YQEQVMQIAQ+
Sbjct: 647  DIVALVALYRPGPMENIPVYCEVKNGLREITSVHPSIDHILAETQGIIVYQEQVMQIAQV 706

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            ++GYSL  AD+LRRAMGKKIKE MD ++ +F  GA+KNG+ K  A  +F+LL KFA+YGF
Sbjct: 707  MAGYSLGGADLLRRAMGKKIKEAMDAERPKFEQGAAKNGVEKKKATEVFDLLEKFANYGF 766

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPS 820
            NKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R+   +  +PP 
Sbjct: 767  NKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLGLPWVPPC 826

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
            VN     F V + ++ Y+L A+K VG    + ++E    + F ++ DF  RVD KK+ +R
Sbjct: 827  VNRSLATFDVVEGQLVYALGALKNVGLEAMKLVVEGRDGRAFSTVFDFARRVDLKKIGKR 886

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE +  AG  D    +R ++  SLD +  Y+  + + + +   ++F  E G    +  L
Sbjct: 887  PLEMMARAGCFDVLDPNRRRIFDSLDALVAYSAAIHEQKGSAQVSLFG-EAGDDLPEPRL 945

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNI-RLA 998
               S    + R   E + +GFY SGHPLD Y P L++  +   +E +A   RG  + +LA
Sbjct: 946  SPVSDWLPAERLAEEFKAVGFYLSGHPLDDYMPALKRQDVVTLDEVMAKAERGPLVAKLA 1005

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +V  +Q++K+ +G+R  +   S+P   YE   F
Sbjct: 1006 GVVAGRQERKSARGNRFAFAQLSDPTGAYEVTLF 1039


>gi|254419705|ref|ZP_05033429.1| DNA polymerase III, alpha subunit subfamily, putative [Brevundimonas
            sp. BAL3]
 gi|196185882|gb|EDX80858.1| DNA polymerase III, alpha subunit subfamily, putative [Brevundimonas
            sp. BAL3]
          Length = 1153

 Score =  993 bits (2567), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1038 (49%), Positives = 694/1038 (66%), Gaps = 27/1038 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQ-QPAIAITDTNNLFSALEFSQKACAAG 66
            S  FVHL+V S+YSLLEGA+     L K+AAD   PA+AI D  NLF ALEFSQ    AG
Sbjct: 7    SQGFVHLRVRSAYSLLEGAIKAGK-LGKLAADAGMPAVAIADRTNLFGALEFSQYTRDAG 65

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +QPII C L +      +     KTP     ++VLLV    G++ L  L S  YL D G+
Sbjct: 66   VQPIIACALPVFGIGGHQAVRWAKTP-----TVVLLVQNEAGWRNLCALSSSAYL-DAGE 119

Query: 127  QSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             +    ++W Q +  +EGLI+L+GG  GP+D  F    +      L T K  FGDR YV 
Sbjct: 120  MA-EPGVAWDQVVARSEGLILLSGGPDGPVDPLFAQGKTNEGAAALATMKSAFGDRFYVE 178

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQRH   D  R E  +V+ AY HE PLVATN+  +      ++HD L+ +A      Q+D
Sbjct: 179  LQRHGLEDEKRAEPGLVEWAYAHETPLVATNDVYYAKAAQAKSHDALLCIADGAFTGQED 238

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+T +H+ K+   M  +F+DLPEA +NT++IARRC+F++  HAPILPRF         
Sbjct: 239  RRRITGEHWFKSAEAMRDLFADLPEACDNTIDIARRCAFLVNTHAPILPRF----DTGAG 294

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + E +EL ++A  GL+VRL Q  I       +Y  RL++E+ +I +M F GYFLIV+DFI
Sbjct: 295  RSEADELAHQAREGLKVRLGQ--ITPAVPEAEYWSRLEWEVGIIQQMGFPGYFLIVSDFI 352

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK++ IPVGPGRGSGAGS+ A++LTITD+DPLRF LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 353  KWAKEHGIPVGPGRGSGAGSLVAWSLTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQ 412

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI YVQ++YG +RVAQIITFG+LQA+A LRDVGR LQMP  QVDRLCK++PN+PA
Sbjct: 413  ERREEVIDYVQDRYGKDRVAQIITFGTLQARAVLRDVGRVLQMPLGQVDRLCKMVPNNPA 472

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +PV+L QAI  + R +EAR A+P+V  LLE + +LEGLYR+ASTHAAGIVIGDRPL +LV
Sbjct: 473  NPVTLAQAIDLEPRLKEARDAEPAVRTLLETALELEGLYRNASTHAAGIVIGDRPLVELV 532

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+Y+D RS +P +QFNMKW+E AGL+KFDFLGLKTLT+L ++  +L +RG   D + +P 
Sbjct: 533  PLYQDPRSTIPASQFNMKWVEPAGLVKFDFLGLKTLTVLDRARGYLERRGAAQDWNGLPL 592

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  TY L+ +  T+G+FQLES GMR  L  M+   IE+I AL+SLYRPGP++ I  Y +
Sbjct: 593  DDARTYELMASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMEMIDTYID 652

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK G+ ++  +HP +  +L ET GVIIYQEQVM+IAQ+L+GYSL EAD+LRRAMGKK KE
Sbjct: 653  RKFGRAEVDYLHPSLKEVLTETYGVIIYQEQVMKIAQILAGYSLGEADLLRRAMGKKKKE 712

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMD Q+ RF+ GA +  + +T + +IF+L+AKFA YGFNKSHAAAYA+IS+QT W+K ++
Sbjct: 713  EMDFQRARFVKGALEKTVPETQSGSIFDLVAKFAGYGFNKSHAAAYALISFQTGWLKANH 772

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNR--IYYSL 839
            PVEF AASM+L++ N +K+  F QDA++F++ ++PP +N    DF V   D+R  + Y+L
Sbjct: 773  PVEFFAASMSLDLSNTDKLAVFYQDAKRFDVPVLPPDLNRSSADFDVAWDDSRGVVLYAL 832

Query: 840  AAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AI+ VG    +H++E       F  + DF  RVD + +N+R LE L  AGA D    +R
Sbjct: 833  GAIRNVGLEAMKHVIEVRETGGRFADIFDFLERVDPRSVNKRALEGLAKAGAFDSIHPNR 892

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             QL++  D +  Y Q V   R +   ++F  ++     +  L+         R ++E   
Sbjct: 893  RQLVEQADVLMAYCQSVAAERASSQVSLFGGDQAHVG-RPRLKSVEPWVGPERLDHELSA 951

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKT-RKGSRI 1015
            +GFY SGHPLD     L++  +    E++      +   ++A +V  KQ++ + R G + 
Sbjct: 952  VGFYLSGHPLDEMTSALKRKRVTFVAEAIPLAESGHEAFQMAGVVRRKQERASARTGEKF 1011

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +VTFS+P  E+E  F P
Sbjct: 1012 AFVTFSDPTGEFECLFPP 1029


>gi|315111547|ref|YP_508882.2| DNA polymerase III subunit alpha [Jannaschia sp. CCS1]
          Length = 1177

 Score =  992 bits (2565), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/1074 (48%), Positives = 697/1074 (64%), Gaps = 69/1074 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+P FVHL++H+ YSLLEGA+ +  +   +A    PA+A+TDTNN+F ALEFS+ A  
Sbjct: 1    MTKAPKFVHLRLHTEYSLLEGAMKVKKMPGIVADAGMPAVAVTDTNNMFCALEFSEMAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+D++ +    +   G+ P     +IVLL     GY+ L++L S +YL   
Sbjct: 61   AGVQPIIGCQIDLEYE----VIAPGEKPRAPA-AIVLLAQNRAGYENLMKLNSALYLRGD 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G  S  + LS L E   EGLI L+GG  GP+ R         AE  L T   ++ DRLYV
Sbjct: 116  GT-SPHVTLSELAE-HAEGLICLSGGPDGPVGRHLRAAQMPKAESLLKTLAAIYPDRLYV 173

Query: 185  NLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       ++  E   V+LAY   LPLVATN+  F   E YEAHD ++ VA   
Sbjct: 174  ELQRHPGEGGLPEAEKLTERGHVELAYALGLPLVATNDVYFPKSEIYEAHDAMLCVAQGA 233

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+TP HY K+  EM ++F+DLPEALENT+EIA+RC+F  ++H PILP+F +
Sbjct: 234  YVDQSEPRRRLTPQHYFKSADEMAALFADLPEALENTIEIAQRCAFRAEMHDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E          ELR  A  GL+ RL    I      +DY+ RLDFEL +I  M F GYF
Sbjct: 294  DEV--------AELRRMANEGLKERLR--VIPHAASVEDYQARLDFELEIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQW+K   IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIQWSKDQEIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERISMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ KYG +RV QIITFG+L +KAA+RDVGR LQMP+ QVDRL K
Sbjct: 404  FDIDFCMDRREEVIRYVQEKYGRDRVGQIITFGALLSKAAVRDVGRVLQMPFGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRF-----------REARLADPSVDRLLEISQKLEGLYRHA 525
            +IP +   PVS+ QAI D+ RF           R+ R+ +P+  RL++ ++K+EGL R+A
Sbjct: 464  MIPVEGVKPVSIAQAIKDEPRFIEEMRESEQDKRDGRV-NPT-RRLMDYAEKIEGLLRNA 521

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            STHAAG+VIGDRPL +LVP+YRD RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q +
Sbjct: 522  STHAAGVVIGDRPLDELVPLYRDPRSDMPATQFNMKWVEPAGLVKFDFLGLKTLTVVQNA 581

Query: 586  LDFL------------------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            +D +                     G +  ++LIP DD  +Y L  +  T+ +FQ+ESSG
Sbjct: 582  IDLIHTSGRQLHEGPDGTTLYEPPEGTENQINLIPLDDKASYDLYASAKTVAVFQVESSG 641

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            M  AL  M+PDCIEDIIALV+LYRPGP++NI  +   KNG  +   +HP +D +L ETQG
Sbjct: 642  MMDALRRMKPDCIEDIIALVALYRPGPMENIPKFCEVKNGLSERERLHPTVDHLLDETQG 701

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+E MD ++ +F++GA +NG+ +  A+
Sbjct: 702  IIVYQEQVMQIAQEMAGYSLGGADMLRRAMGKKIQEAMDAERPKFLAGAKENGVDEAKAL 761

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
              + LL KFA+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M  ++   +K+  + Q
Sbjct: 762  ETWALLDKFANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKQ 821

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA----SADKPFD 863
            +  +  I+ + P VN     F V D ++ Y+L A+K VG    + I+E        KP+ 
Sbjct: 822  EVDRMGIETLAPCVNRSAATFTVEDGKVLYALGALKNVGVEAMKMIVEGRQTDQGVKPYA 881

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            +L D   RVD K++ +R LE LV AGA D    +R  +L SLD +  Y+  V    ++  
Sbjct: 882  TLFDLARRVDLKRVGKRSLEMLVRAGAFDELDRNRRHVLDSLDGLTAYSAAVHDQASSNQ 941

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSV---RFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
             ++F    G   D +   + S     +   R   E + +GFYFSGHPLD Y+P L++ G+
Sbjct: 942  VSLF----GDAGDDLPEPRLSSAPDWLPNERLAAEHQAVGFYFSGHPLDDYQPALKRRGV 997

Query: 981  KGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                E  A ++      ++A  V  KQ++K+++G+R  +V+ S+P   YE   F
Sbjct: 998  MTLAEVEARVQQGPFVAKMAGAVSVKQERKSQRGNRFAFVSLSDPTGLYEITIF 1051


>gi|77465552|ref|YP_355055.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides 2.4.1]
 gi|77389970|gb|ABA81154.1| DNA polymerase III alpha chain [Rhodobacter sphaeroides 2.4.1]
          Length = 1163

 Score =  991 bits (2562), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/1062 (48%), Positives = 682/1062 (64%), Gaps = 56/1062 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+VH+ YSLLEGA+ +  ++    A   PA+A+TDTN +F+ALEFS  A  
Sbjct: 1    MSNAPRFIHLRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPI+GCQ+ +  +        G+ P P  P +VLL  T  GY  L++L S +YL  +
Sbjct: 61   AGIQPIVGCQVSVAYE----TAALGERPKPPAP-VVLLAQTETGYGNLMKLSSCLYLGKE 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G    ++  S L E   EGLI LTGG  GP+ R         AE  L     ++  RLYV
Sbjct: 116  GALP-QVTPSEL-ERHAEGLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYV 173

Query: 185  NLQRHRG-------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             LQRH G        +R  E   V+LAY   LPLVATN+  F   E YEAHD L+ +A  
Sbjct: 174  ELQRHPGEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEG 233

Query: 238  TVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V Q   R R+TP HY K+ +EMV++F+DLPEA+ENTVEIARRC+F      PILPRF 
Sbjct: 234  AYVDQVAPRRRLTPQHYFKSEAEMVALFADLPEAVENTVEIARRCAFKAAKRPPILPRFA 293

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            + E +        ELR +A  GL  RLA   I      +DY  RL FEL +I +M F GY
Sbjct: 294  DDEVE--------ELRRQAKEGLAARLA--VIPHAAPVEDYEARLSFELGIIEQMGFPGY 343

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI+W K N IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 344  FLIVADFIKWGKANGIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMP 403

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL 
Sbjct: 404  DFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463

Query: 477  KLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K+IP +   PVS+Q A+AD+ R REA   +  V RLL+   ++EGL R+ASTHAAG+VIG
Sbjct: 464  KMIPVEGVKPVSIQKALADEPRLREAAKTEEVVKRLLDYGMQIEGLLRNASTHAAGVVIG 523

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------ 589
            DRPL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D +      
Sbjct: 524  DRPLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIRGTGRP 583

Query: 590  ------------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
                           G + D+  IP +D  TY L     T+ +FQ+ESSGM  AL  M+P
Sbjct: 584  LHMAADGRVLYDPPPGAENDIGHIPLEDKATYELYAQAKTVAVFQVESSGMMDALRRMKP 643

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             CIEDI+ALV+LYRPGP++NI VY   K+G   + S+HP IDP+LKETQG+I+YQEQVMQ
Sbjct: 644  TCIEDIVALVALYRPGPMENIPVYCEVKHGLRDLESLHPTIDPILKETQGIIVYQEQVMQ 703

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKF 756
            IAQ++ GY+L  AD+LRRAMGKKI EEM K++ +FI GA K +GI    A  +F+LL KF
Sbjct: 704  IAQVMGGYTLGGADLLRRAMGKKIAEEMAKERPKFIEGAKKTHGIDAKKAGEVFDLLEKF 763

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M  ++   +K+  + ++  +  I+ 
Sbjct: 764  ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRT 823

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            + P VN     F V D  + Y+L A+K VG    R I+EA  D+PF +L D   RV+ K+
Sbjct: 824  VAPCVNASLATFTVRDGAVVYALGALKNVGVEAMRLIVEARGDRPFATLFDMARRVELKR 883

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            + +R LE L  AGA D    +R ++ ++LD +  Y+  + +   +   ++F  E G    
Sbjct: 884  IGKRPLEMLARAGAFDALDRNRARVFEALDALVAYSAAIHEALNSSQVSLFG-EAGADIP 942

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-----R 991
            +  L          R   E + +GFY SGHPLD Y   L++  +     ++A +     R
Sbjct: 943  EPRLPSRDDWLPVERLAQEHQAIGFYLSGHPLDDYMGALKRRNVT----TLAALTDLAQR 998

Query: 992  GNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            G  + +LA  V S+Q+KK+ KG+R  +V  S+P   YE   F
Sbjct: 999  GPMVAKLAGAVSSRQEKKSAKGNRFAFVQLSDPTGLYECTVF 1040


>gi|146279950|ref|YP_001170108.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides ATCC 17025]
 gi|145558191|gb|ABP72803.1| hypothetical protein Rsph17025_3949 [Rhodobacter sphaeroides ATCC
            17025]
          Length = 1163

 Score =  991 bits (2561), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/1062 (48%), Positives = 683/1062 (64%), Gaps = 56/1062 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+VH+ YSLLEGA+ +  ++    A   PA+A+TDTN +F+ALEFS  A  
Sbjct: 1    MSNAPRFIHLRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPI+GCQ+ +   +   +  + K P P    +VLL     GY  L++L S +YL  +
Sbjct: 61   AGIQPIVGCQVSV-AYETAALGERAKPPAP----VVLLAQNEAGYGNLMKLSSCLYLGKE 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G    ++ L  L+   + GLI LTGG  GP+ R         AE  L     ++  RLYV
Sbjct: 116  GALP-QVTLEELERHAS-GLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYV 173

Query: 185  NLQRHRG-------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             LQRH G        +R  E   V+LAY   LPLVATN+  F   E YEAHD L+ +A  
Sbjct: 174  ELQRHPGEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEG 233

Query: 238  TVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V Q   R R+TP HY K+ +EMV++F+DLPEA+ENTVEIARRC+F      PILPRF 
Sbjct: 234  AYVDQVAPRRRLTPQHYFKSEAEMVALFADLPEAVENTVEIARRCAFKAAKRPPILPRFA 293

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            + E +        ELR +A  GL  RLA   I      +DY  RL FEL +I +M F GY
Sbjct: 294  DDEVE--------ELRRQAKGGLAARLA--VIPHAAPVEDYEARLAFELGIIEQMGFPGY 343

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI+W K N IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 344  FLIVADFIKWGKANGIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMP 403

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL 
Sbjct: 404  DFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463

Query: 477  KLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K+IP +   PVS+Q A+AD+ R REA   +  V RLL+   ++EGL R+ASTHAAG+VIG
Sbjct: 464  KMIPVEGVKPVSIQKALADEPRLREAAKTEEVVKRLLDYGMQVEGLLRNASTHAAGVVIG 523

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------ 589
            DRPL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D +      
Sbjct: 524  DRPLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIRGTGRP 583

Query: 590  ------------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
                           G + D+  IP +D   Y L     T+ +FQ+ESSGM  AL  M+P
Sbjct: 584  LHMAADGRVLYDPPPGAENDIGHIPLEDKAAYELYAQAKTVAVFQVESSGMMDALRRMKP 643

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             CIEDI+ALV+LYRPGP++NI VY   K+G  ++ S+HP IDP+LKETQG+I+YQEQVMQ
Sbjct: 644  TCIEDIVALVALYRPGPMENIPVYCEVKHGLRELESLHPTIDPILKETQGIIVYQEQVMQ 703

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKF 756
            IAQ+++GY+L  AD+LRRAMGKKI EEM K++ +FI GA K +GI    A  +F+LL KF
Sbjct: 704  IAQVMAGYTLGGADLLRRAMGKKIAEEMAKERPKFIEGAKKTHGIDTKKAGEVFDLLEKF 763

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M  ++   +K+  + ++  +  I+ 
Sbjct: 764  ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRT 823

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            + P VN     F V D  + Y+L A+K VG    R I+EA  D+PF +L D   RV+ KK
Sbjct: 824  VAPCVNASLATFTVRDGAVVYALGALKNVGVEAMRLIVEARGDRPFATLFDMARRVELKK 883

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            + +R LE L  AGA D    +R ++ ++LD +  Y+  + + R +   ++F  E G    
Sbjct: 884  IGKRPLEMLARAGAFDALDRNRARVFEALDALVSYSAAIHEARNSSQVSLFG-EAGADIP 942

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-----R 991
            +  L          R   E + +GFY SGHPLD Y   L++  +     ++A +     R
Sbjct: 943  EPRLPSRDDWLPVERLAQEHQAIGFYLSGHPLDDYMGALKRRNVT----TLAALTDLAQR 998

Query: 992  GNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            G  + +LA  V S+Q+KK+ KG+R  +V  S+P   YE   F
Sbjct: 999  GPMVAKLAGAVSSRQEKKSAKGNRFAFVQLSDPTGLYECTVF 1040


>gi|315111546|ref|YP_421932.2| DNA polymerase III subunit alpha [Magnetospirillum magneticum AMB-1]
          Length = 1154

 Score =  991 bits (2561), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1041 (48%), Positives = 694/1041 (66%), Gaps = 31/1041 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VH++YSL EGA+ L  ++        PA+ ITDT NLF ALEFS     AGIQPI
Sbjct: 7    FVHLRVHTAYSLAEGAIKLKQLIKLCEKAAMPAVGITDTANLFGALEFSTSCSDAGIQPI 66

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G Q+ I  +D    +  G+ P P   ++VLL     GY  L++LVS+ +L     ++ +
Sbjct: 67   VGAQIAIRREDG-GPSKDGRKPEPD--TLVLLCQNEAGYLNLLKLVSKAFLETDAGETPQ 123

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L  L E  ++GLI+LTGG +GP+ R      ++ AE  L    + F  R YV L RH 
Sbjct: 124  VTLHDL-ETRSDGLIVLTGGPAGPVGRLLADGQTEKAEIVLARLARAFAGRCYVELMRHN 182

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                 R E  +V LAY H+LPLVATN + F     YEAHD L+ +A    +SQ +R R+T
Sbjct: 183  LEVEDRIEPLLVSLAYKHDLPLVATNEAFFADRGMYEAHDALVCIAEGAYISQDERRRLT 242

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P+HY K+  EM ++F+DLPEA +NT+ IARRC+F +    PILP +     D + + E  
Sbjct: 243  PEHYFKSPEEMRALFADLPEACDNTLVIARRCAFGVAKRKPILPPY---RMDGLTEAEV- 298

Query: 310  ELRNKAVAGLEVRLAQGAIAKG-------YHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             LR K   GLE RL +    +G       + A+ YR+R++FELNVI  M F GYFLIV+D
Sbjct: 299  -LRKKTWEGLEARLEKHVFKEGMTDDEKEHAAKPYRERIEFELNVIEEMGFPGYFLIVSD 357

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K   IPVGPGRGSGAGS  A+ALTITD+DPLR+ LLFERFLNP+R+SMPDFDIDF
Sbjct: 358  FIQWSKAQEIPVGPGRGSGAGSAVAWALTITDLDPLRWGLLFERFLNPERVSMPDFDIDF 417

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+E IRYVQ KYG+ +VAQIITFG LQA+A LRDVGR LQMPY QVDR+CKL+PN+
Sbjct: 418  CQDRREETIRYVQGKYGYSQVAQIITFGKLQARAVLRDVGRVLQMPYGQVDRICKLVPNN 477

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+P++L QA+  +   +E +  D +V  L++++ KLEGLYRHASTHAAG+VIGDRPL +
Sbjct: 478  PANPMTLEQALESEPLLKEQKERDEAVSHLIDLAMKLEGLYRHASTHAAGVVIGDRPLDE 537

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT++  ++  + + +G+ +DLS 
Sbjct: 538  LVPLYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVMVTAVKHVKKTKGIDIDLSA 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD ++Y LL+     G+FQLESSGMR  L  M P+ +ED+IA+V+LYRPGP+D I  
Sbjct: 598  IPLDDAKSYELLSRGDAAGVFQLESSGMRDVLRKMGPNRLEDLIAVVALYRPGPMDQIPR 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y   K+GKE+   +HPL++P+LKET G+++YQEQVMQIAQ+LSGYSL  AD+LRRAMGKK
Sbjct: 658  YIACKHGKEEPDYMHPLLEPILKETFGIMVYQEQVMQIAQVLSGYSLGGADLLRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             +EEMD+Q+ +F+ GA+   +    A  IF+ +AKFA+YGFNKSHAAAYA+I+YQTAW+K
Sbjct: 718  DREEMDRQRAKFVEGATARAVDGGQASMIFDKVAKFAEYGFNKSHAAAYALIAYQTAWLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRI 835
             +YP EF+AA+MT EM N +K+  F Q+  +  I+++PP +N     F V     G + +
Sbjct: 778  ANYPAEFMAATMTYEMSNTDKLNSFRQELDRLGIKLLPPDINASQPTFSVEVLPDGGSAV 837

Query: 836  YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y+LAA+K VG    + ++ E      F  + DF +R+DSK LNRR LE++V AG  D  
Sbjct: 838  RYALAALKNVGEAAMKSLVDERERGGRFKDVGDFAARMDSKVLNRRQLENMVKAGVFDSL 897

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R +L ++ D + +YA    ++R +   ++     G+ +  + LE     +   +   
Sbjct: 898  DKNRGRLFKNADTLCRYAASAAEDRDSSQMSLLG---GSNAPTLKLESGPDWSPHEKLNQ 954

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN---IRLAAMVVSKQQKKTRK 1011
            E   +GFY S HPLD Y   ++++ +    E    ++      +RLA  ++SKQ++ + K
Sbjct: 955  EFEAVGFYLSAHPLDAYAKSMKRLNVLKIAELPRHLQSGGKGRVRLAGSLLSKQERVSAK 1014

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            GSR  ++ FS+ +  +E   F
Sbjct: 1015 GSRYAFLQFSDASGMFEVTCF 1035


>gi|56695561|ref|YP_165911.1| DNA polymerase III subunit alpha [Ruegeria pomeroyi DSS-3]
 gi|56677298|gb|AAV93964.1| DNA polymerase III, alpha subunit [Ruegeria pomeroyi DSS-3]
          Length = 1187

 Score =  988 bits (2553), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/1081 (47%), Positives = 702/1081 (64%), Gaps = 74/1081 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNI---LDKIAADQQPAIAITDTNNLFSALEFSQK 61
            +  +P F+HL++H+ YSLLEGA+ L  +    DK+     PA+A+TDTNNLF+ALEFS  
Sbjct: 1    MSSNPRFIHLRLHTEYSLLEGAVRLKKLPALCDKMG---MPAVAVTDTNNLFAALEFSVG 57

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A  AGIQPIIGCQLD+     +     G+ P P  P +VLL     GY+ L++L S +Y+
Sbjct: 58   ASGAGIQPIIGCQLDLAYVAAMP----GERPKPPAP-LVLLAQNEAGYENLMKLNSCLYV 112

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             D+G Q  ++ L  L+ +G +GLI L+GG  GP+ R         AE  +     +F DR
Sbjct: 113  -DKGGQLPQVTLEELEALG-DGLICLSGGPDGPVGRLLQAGQRPAAEALVDRLAAIFADR 170

Query: 182  LYVNLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             Y+ LQRH G       +R  E   V++AY   LPLVATN+  F     YEAHD L+ +A
Sbjct: 171  FYIELQRHPGEGGAPEAERLTERGHVEMAYAKGLPLVATNDVYFPEAGMYEAHDALICIA 230

Query: 236  HSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                V Q + R R+T  HYLK+  EM ++F+DLPEA+ENTVEIARRC+F+     PILP+
Sbjct: 231  DGAYVDQAEGRRRLTAQHYLKSPQEMATLFADLPEAIENTVEIARRCAFMAYRRDPILPK 290

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            F + E          ELR +A  GL+ RLA   I     A+DY++RLDFEL++I  M F 
Sbjct: 291  FADDEV--------VELRRQANEGLQARLA--VIPHAVSAEDYQKRLDFELDIIEGMGFP 340

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIVADFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+S
Sbjct: 341  GYFLIVADFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVS 400

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDR
Sbjct: 401  MPDFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDR 460

Query: 475  LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            L K+IP +   PVS++ A+ D+ R RE    +  VDRLL   Q++EGL R+ASTHAAG+V
Sbjct: 461  LSKMIPVEGVKPVSIEKALKDEPRLREEARNEEVVDRLLTYGQQVEGLLRNASTHAAGVV 520

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            IGDRPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G
Sbjct: 521  IGDRPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFKSG 580

Query: 594  ----VKVD--------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
                V  D              ++ IP DD  TY L +   T+ +FQ+ESSGM  AL+ M
Sbjct: 581  RPLHVAADGRQLYDPAEGAENQINAIPLDDVPTYKLYSAAKTVAVFQVESSGMMDALKRM 640

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            +P CIEDI+ALV+LYRPGP++NI VY   KNG  +I S+HPLID +L+ETQG+I+YQEQV
Sbjct: 641  KPTCIEDIVALVALYRPGPMENIPVYCEVKNGLREITSVHPLIDHILEETQGIIVYQEQV 700

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQIAQ+++GYSL  AD+LRRAMGKKIKE MD ++ +F +GA++NG+    A  +F+LL K
Sbjct: 701  MQIAQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFETGAAENGVDAKKASEVFDLLEK 760

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNI 814
            FA+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R+   +
Sbjct: 761  FANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLGL 820

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA------------------ 856
              +PP VN     F V    + Y+L A+K VG    R ++E                   
Sbjct: 821  PYVPPCVNRSQATFDVVGGELVYALGALKNVGVEAMRLVVEGRQGAHPPEPASSRDAARR 880

Query: 857  ---SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
               + ++PF +L DF  RVD KK+ +R LE +  AGA D    +R ++  S++ +  Y+ 
Sbjct: 881  PDRAEERPFVTLFDFARRVDLKKVGKRPLEMMARAGAFDQLDPNRRRVFDSIEALMAYSG 940

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
             + + +++   ++F  E G    +  L +      + R   E + +GFY SGHPLD Y P
Sbjct: 941  AIFEQKSSNQVSLFG-EAGDDLPEPRLAQAPDWLPAERLSEEFKAIGFYLSGHPLDDYMP 999

Query: 974  ILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             L++ G+   +E     R   +  ++A +V  +Q++K+ +G+R  +   S+P   +E   
Sbjct: 1000 ALKRKGVLTLDEVTEQARSGPVLAKMAGVVAGRQERKSARGNRFAFAQMSDPTGAFEVTL 1059

Query: 1032 F 1032
            F
Sbjct: 1060 F 1060


>gi|288962247|ref|YP_003452542.1| DNA polymerase III subunit alpha [Azospirillum sp. B510]
 gi|288914513|dbj|BAI75998.1| DNA polymerase III subunit alpha [Azospirillum sp. B510]
          Length = 1167

 Score =  987 bits (2552), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/1054 (49%), Positives = 698/1054 (66%), Gaps = 44/1054 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS+YSL EGA+ +  ++      Q PA+A+TDT NLF ALEF+  A  AG+QPI
Sbjct: 6    FIHLRVHSAYSLSEGAIKVKELVKLCLKQQMPAVAVTDTGNLFGALEFALAASDAGVQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFP-----TVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            IG  L I          Q K   P     T   +VLL    EGY+ L  LVS+ +L    
Sbjct: 66   IGTVLGITRVG----PAQTKPGLPGKAAATPDQLVLLCQNEEGYRNLAALVSKAFLESDP 121

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                ++ L  L E  + GLI LTGG +G + R        +A   L   K+LF  RLYV 
Sbjct: 122  LAGPQVALDAL-EGHSGGLIALTGGPAGSVGRLLHEGQKDLALDVLERLKRLFPGRLYVE 180

Query: 186  LQRHRG-------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            LQRH G        +   E  ++ LAY H LPLVATN+  F +E+ YEAHD L+ +A   
Sbjct: 181  LQRHEGGRGQFAAVENAIEPALIDLAYAHGLPLVATNDCYFATEDMYEAHDALLCIAEGA 240

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
             +SQ DR R+TPDH  K+  EM  +F+DLPEA++NTV IARRCS++L+   PILP F   
Sbjct: 241  YLSQDDRRRLTPDHRFKSAEEMRRLFADLPEAVDNTVAIARRCSYLLKPIKPILPPFA-- 298

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARM 351
             C+   + E++ELR ++ AGLE+RL +         +        Y +RL+FEL+VI +M
Sbjct: 299  -CEG-GRTEDDELRAQSRAGLEMRLEKVVFTPEMTPEQREETRKTYFERLEFELDVIVKM 356

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            KF GYFLIV+DFI+WAK  +IPVGPGRGSGAGSV A+ALTITD+DPLRF LLFERFLNP+
Sbjct: 357  KFPGYFLIVSDFIKWAKNEDIPVGPGRGSGAGSVVAWALTITDLDPLRFGLLFERFLNPE 416

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPDFDIDFCQDRR+EVIRYVQ KYG++RVAQIITFG LQA+A LRDVGR LQMPY Q
Sbjct: 417  RVSMPDFDIDFCQDRREEVIRYVQKKYGYDRVAQIITFGKLQARAVLRDVGRVLQMPYGQ 476

Query: 472  VDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            VD++CK++PN+PA+PV+L QA+  +   R+AR +D +V  L++I+ KLEGLYRHASTHAA
Sbjct: 477  VDKICKMVPNNPANPVTLQQALDSEEMLRQARDSDDTVRHLVDIALKLEGLYRHASTHAA 536

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VIGDRPL +LVP+YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++D + 
Sbjct: 537  GVVIGDRPLQELVPLYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKTAVDLIP 596

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            +   K DL+ +P DD ++Y LL+     G+FQLESSGMR  L  ++P+ +EDIIALVSLY
Sbjct: 597  E---KPDLTTVPLDDEKSYQLLSRAEATGVFQLESSGMRDVLRRLKPNRLEDIIALVSLY 653

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+DNI  Y   KNG+EK   +H  ++ +LKET G++IYQEQVMQIAQ+LSGYSL  A
Sbjct: 654  RPGPMDNIPKYIRVKNGEEKADYMHDSLEGILKETFGIMIYQEQVMQIAQVLSGYSLGGA 713

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIKEEMD Q++ F  GA   G+   +A  IF+ + KFA YGFNKSHAAAYA
Sbjct: 714  DLLRRAMGKKIKEEMDNQRKIFCDGAEARGVKADLASMIFDQVMKFAGYGFNKSHAAAYA 773

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +++Y TA++K ++PVEF+AASMTL++ N +K+  F Q+  +  ++++ P +N     F V
Sbjct: 774  LVAYHTAYLKANHPVEFMAASMTLDLGNTDKLNVFRQELARLRVKLLTPDINKSDSIFGV 833

Query: 831  -----GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884
                 G   + Y+LAA+KGVG    + ++E    + PF SL DF  R+D K +N+R LE+
Sbjct: 834  EQLADGSKAVRYALAAVKGVGLPAMKAVVEERRRNGPFRSLFDFARRLDLKTINKRQLEN 893

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT---LE 941
            L  AGA D    +R Q+  +L+ I +YAQ     R +   N+F    G     +    + 
Sbjct: 894  LACAGAFDGLNPNRAQVHAALETIIRYAQAEAAERDSGIGNLFGGGFGGGGGGLPEPEMP 953

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYK-PILRKMGIKGYEESVATIRGNNIR--LA 998
            K        + ++E   +GFY S HPLD Y  P+ R   ++  E   A  +G + R  +A
Sbjct: 954  KVKDWEPLEKLKHEFGAIGFYLSAHPLDAYSGPLGRMKVVRSAELQTAIAKGGSTRYKMA 1013

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++VSK++K  + G+R  +V  S+    YE   F
Sbjct: 1014 GIIVSKKEKTAKSGNRFAFVELSDATGGYEVTLF 1047


>gi|114765486|ref|ZP_01444596.1| DNA polymerase III subunit alpha [Pelagibaca bermudensis HTCC2601]
 gi|114542196|gb|EAU45227.1| DNA polymerase III subunit alpha [Roseovarius sp. HTCC2601]
          Length = 1174

 Score =  984 bits (2545), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1066 (47%), Positives = 692/1066 (64%), Gaps = 64/1066 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VH+ YSLLEGA+ L  +     A + PA+A+TDTNNLFSALEFS  A  AG+Q
Sbjct: 4    PRFIHLRVHTEYSLLEGAIRLKKLPGLCEAMEMPAVAVTDTNNLFSALEFSVTASGAGVQ 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PI+GCQ+D      L+         P  P+ +VLL     GY+ L++L S +YL   G+ 
Sbjct: 64   PIVGCQVD------LRYVQPAPGERPKAPAPVVLLAQNERGYENLMKLNSCLYLRRDGEL 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            +  + L  L+E G EG+I L+GG  GP+ R    N    A+  L    +++ DRLYV LQ
Sbjct: 118  A-HVLLDELEEYG-EGVICLSGGPDGPVGRLLRENHRAAAQTLLTRLHQIYQDRLYVELQ 175

Query: 188  RHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            RH G D      R  E   V++AY   +PLVATN+  F  E  YEAHD ++ +A    V 
Sbjct: 176  RHPGEDGLPEAERLTERGHVEMAYEMGIPLVATNDVYFPKENMYEAHDAMICIAEGAYVD 235

Query: 242  QKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            Q++ R R+TP HYLK   EM ++F+DLPEALENTVEIA+RC+F+     PILP+F + E 
Sbjct: 236  QQEPRRRLTPQHYLKTPQEMATLFADLPEALENTVEIAKRCAFMAYRRDPILPKFADDEV 295

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                     ELR +A  GL+ RL+   I      + Y++RLDFEL +I  M F GYFLIV
Sbjct: 296  --------VELRRQANEGLQKRLS--VIPHAVTVEKYQERLDFELGIIEGMGFPGYFLIV 345

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDI
Sbjct: 346  ADFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDI 405

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K+IP
Sbjct: 406  DFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSKMIP 465

Query: 481  NDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +   PVS++ A+ D+ R RE    +  VDRLL+   ++EGL R A THAAG+VI DRP 
Sbjct: 466  VEGVKPVSIEKALQDEPRLREEAEREEVVDRLLKYGMQVEGLLRSAGTHAAGVVIADRPT 525

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
             +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G  +   
Sbjct: 526  DELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLILKSGRPIHVA 585

Query: 597  ---------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
                            ++LIP DD +TY L  +  T+ +FQ+ES+GM  AL+ M+P CIE
Sbjct: 586  ADGSQLYEPAEGGENQMNLIPLDDDKTYKLYASAKTVAVFQVESTGMMDALKRMKPTCIE 645

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            DI+ALV+LYRPGP++NI VY   KNG+ +I S+HP ID +L ETQG+I+YQEQVMQIAQ 
Sbjct: 646  DIVALVALYRPGPMENIPVYCEVKNGQREITSVHPSIDHILAETQGIIVYQEQVMQIAQE 705

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            ++GYSL  AD+LRRAMGKKIKE MD ++ +F SGA+KNG+ K  A  +F+LL KFA+YGF
Sbjct: 706  MAGYSLGGADLLRRAMGKKIKEAMDAERPKFESGAAKNGVEKKKATEVFDLLEKFANYGF 765

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK-KFCQDARQFNIQIMPPS 820
            NKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   EK+   F +  +   +  +PP 
Sbjct: 766  NKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTEKLAVYFYETKKGLKLDYIPPC 825

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA---------SADKPFDSLEDFCSR 871
            VN     F V D ++ Y+L A+K VG    R ++E          S DKPF ++ DF  R
Sbjct: 826  VNRSQASFDVEDGKLVYALGALKNVGLDAMRLVVEGRRSVPEDPRSPDKPFVNVYDFARR 885

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            VD K++ +R LE +  AG  D    +R ++ +SLD +  Y+  + + + +   ++F    
Sbjct: 886  VDLKRVGKRPLEMMARAGCFDQLDRNRRRIFESLDALVAYSAAIHEQKASAQVSLF---- 941

Query: 932  GTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
            G   D +   + S       + R   E + +GFY SGHPLD Y P L++  +   +E   
Sbjct: 942  GEAGDDLPEPRLSPAPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRRDVLTLDEVED 1001

Query: 989  TIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              RG     ++  +V  +Q++K+ KG+R  +   S+P+  YE   F
Sbjct: 1002 KARGGACIAKMGGVVAGRQERKSAKGNRFAFAQLSDPSGAYEVTIF 1047


>gi|254463266|ref|ZP_05076682.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacterales bacterium HTCC2083]
 gi|206679855|gb|EDZ44342.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacteraceae bacterium HTCC2083]
          Length = 1168

 Score =  983 bits (2542), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1057 (47%), Positives = 692/1057 (65%), Gaps = 47/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+P F+HL+ H+ YSLLEGAL L  + D   +   PA+A+TDTNNLF+ALEFS  A  
Sbjct: 3    MTKAPRFIHLRAHTEYSLLEGALRLKKLPDLCKSMDMPAVAVTDTNNLFAALEFSVGASG 62

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+DI      +   + K P P    +VLL     GY+ L++L S +Y+ + 
Sbjct: 63   AGVQPIIGCQVDITYL-AAQPGERAKAPAP----LVLLAQNEVGYENLMKLNSCLYIDND 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q  ++ L  L  +   GLI L+GG  G I +         AE  +      FGDRLYV
Sbjct: 118  G-QLPQVSLDDLDTLNA-GLICLSGGPEGAIGKLLQGGQRPAAEALMDRLHGAFGDRLYV 175

Query: 185  NLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH         +R  E   V++AY   LPLVATN+  F     YEAHD L+ +A   
Sbjct: 176  ELQRHPENGGLPEAERLTERGFVEMAYAKSLPLVATNDVYFPKSSMYEAHDALICIADGA 235

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q+D R ++T  HY K++ EMV++F+DLPEA++NT+EIA+RC+F      PILP+F +
Sbjct: 236  YVDQQDPRRKLTAQHYFKSQEEMVTLFADLPEAIKNTIEIAKRCAFQAYRRDPILPKFAD 295

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E          ELR  A  GL+ RLA   I      ++Y++RLDFEL++I  M F GYF
Sbjct: 296  DEV--------AELRRIANEGLQKRLA--VIPHSVTLEEYQERLDFELDIIEGMGFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK N IPVGPGRGSGAGS+ AYALT+TD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 346  LIVADFIQWAKDNGIPVGPGRGSGAGSLVAYALTVTDLDPLRYSLLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 406  FDIDFCMDRREEVIQYVQEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 465

Query: 478  LIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++ A+AD+ R RE    +  V RLL+  Q++EGL R+ASTHAAG+VIGD
Sbjct: 466  MIPVEGVKPVSIEKALADEPRLREEARNEEVVKRLLDYGQQVEGLLRNASTHAAGVVIGD 525

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ +   G ++
Sbjct: 526  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMEQITAGGRQL 585

Query: 597  ------------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                              D++ IP DD  +Y L  +  T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 586  HIAADGTELYTPAAGTVDDINAIPLDDENSYKLYASAKTVAVFQVESSGMMDALKRMKPT 645

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG ++  S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 646  CIEDIVALVALYRPGPMENIPTYCEVKNGLKERESVHPLIDHILEETQGIIVYQEQVMQI 705

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  GA +NG+    A  +F+LL KFA+
Sbjct: 706  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAKENGVPAKKASEVFDLLEKFAN 765

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ ++  ++  +
Sbjct: 766  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVKKGLDLPWV 825

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            PP VN     FKV +  + Y+L A+K VG    + ++E   DKPF ++ D   RVD K++
Sbjct: 826  PPCVNRSDATFKVANGELVYALGALKNVGVEAMKLVVEGRGDKPFSTIYDLARRVDLKRV 885

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE LV +GA D    +R ++  SLD +  Y+Q + + + +   ++F  E G    +
Sbjct: 886  GKRPLEMLVRSGAFDQLDPNRRRVFDSLDGLVNYSQAIFEQKNSNQVSLFG-EAGADLPE 944

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-- 995
              L   S    + R   E R +GFY SGHPLD Y   L++ G+   +E  A      +  
Sbjct: 945  PRLSPVSDWMPAERLNEEFRAVGFYMSGHPLDDYMAPLKRKGVMTLDEVTAKAENGALVA 1004

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +LA +V  +Q++K+ +G+R  +   S+ +  YE   F
Sbjct: 1005 KLAGVVAGRQERKSARGNRFAFAQLSDTSGAYEVTLF 1041


>gi|302383614|ref|YP_003819437.1| DNA polymerase III subunit alpha [Brevundimonas subvibrioides ATCC
            15264]
 gi|302194242|gb|ADL01814.1| DNA polymerase III, alpha subunit [Brevundimonas subvibrioides ATCC
            15264]
          Length = 1162

 Score =  983 bits (2542), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1046 (48%), Positives = 693/1046 (66%), Gaps = 31/1046 (2%)

Query: 3    QYLEKSPS---FVHLQVHSSYSLLEGALSLNNILDKIAADQ-QPAIAITDTNNLFSALEF 58
            Q +  +P+   FVHL+V S+YSLLEGA+    +  K+AAD   PA+ + D  NLF ALEF
Sbjct: 11   QAISDTPAQTGFVHLRVRSAYSLLEGAIKAGKV-GKLAADAGMPAVGVADRVNLFGALEF 69

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            S+ A + G+QP+I C L +      +     K     VP++VL+     G++ L  L S 
Sbjct: 70   SEAAKSVGVQPLIACALPVTGIGGKRTERWAK-----VPTVVLICQDEPGWRNLCALSSS 124

Query: 119  MYLLDQGKQSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL D G +   +  +W Q +  + GLI+L+GG  GP+D  F  N      + L      
Sbjct: 125  AYL-DAGDEEPNV--TWDQVVAHSAGLILLSGGPDGPVDPLFVQNKPAEGARALAAMAGA 181

Query: 178  FGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            FGDR YV LQRH R  +   E  +V+ AY H++PLVATN+  +  +    +HD L+ +A 
Sbjct: 182  FGDRFYVELQRHGRPDEAAAERGLVEWAYGHDVPLVATNDVHYARQNQARSHDALLCIAD 241

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
                 Q+DR R+T  H+ +  +EM ++F+DLPEA ++T+EIARRC+F+++ H PILPRF 
Sbjct: 242  GAFTGQEDRRRITDQHFFRTAAEMRTLFADLPEACDSTIEIARRCAFLVKTHPPILPRFD 301

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              +     + E +EL ++A  GL+ RL    +       DY  RL++E+ +I +M F GY
Sbjct: 302  TGDG----RTEPDELMHQAREGLKARLK--LVTPSAPEADYWTRLEWEVGIITQMGFPGY 355

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV+DFI+WAK + IPVGPGRGSGAGS+ A+ALTITD+DPLRF LLFERFLNP+R+SMP
Sbjct: 356  FLIVSDFIKWAKSHGIPVGPGRGSGAGSLVAWALTITDLDPLRFGLLFERFLNPERVSMP 415

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFCQ+RR+EVI YVQ +YG +RVAQIITFG+LQA+A LRDVGR LQMP  QVDRL 
Sbjct: 416  DFDIDFCQERREEVITYVQERYGKDRVAQIITFGTLQARAVLRDVGRVLQMPLGQVDRLA 475

Query: 477  KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K+IPN+PA+P +L QAI  + R REAR AD +V  LLE + +LEGLYR+ASTHAAGIVIG
Sbjct: 476  KMIPNNPANPTTLAQAIEIEPRLREARDADRAVATLLETALELEGLYRNASTHAAGIVIG 535

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            DRPL +L P+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT+L ++  +L++RG  
Sbjct: 536  DRPLVELTPLYQDPRSDIPATQFNMKWVEPAGLVKFDFLGLKTLTVLDRAHGYLSRRGAA 595

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             D +L+P DD +TY L+ +  T+G+FQLES GMR  L  M+   IE+I AL+SLYRPGP+
Sbjct: 596  QDFNLLPLDDGKTYELMASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPM 655

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            + I  Y +RK G+ ++  +HP +  +L ET GVIIYQEQVM+IAQ+L+GYSL EAD+LRR
Sbjct: 656  EMIDTYIDRKFGRAEVDYLHPSLTEVLTETYGVIIYQEQVMKIAQILAGYSLGEADLLRR 715

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK KEEMD QK RFI GAS+  + +  + +IFEL+AKFA YGFNKSHAAAYA+ISYQ
Sbjct: 716  AMGKKKKEEMDFQKARFIKGASEKSVPEQQSDSIFELVAKFAGYGFNKSHAAAYALISYQ 775

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----G 831
            T W+K ++PVEF AASM+L++ N +K+  F QDAR+F + +  P VNT   DF V    G
Sbjct: 776  TGWLKANHPVEFFAASMSLDLSNTDKLAVFYQDARKFGVPVRAPDVNTSSADFDVTWEEG 835

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               + Y+L AI+ VG    +H++E       F  + DF  RVD + +N+R LE L  AGA
Sbjct: 836  TGAVLYALGAIRNVGLEAMKHVVEVRETGGRFADIFDFLERVDPRAVNKRALEGLAKAGA 895

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QL +  D +  Y Q V  +RT+   ++F  ++   S +  L+         
Sbjct: 896  FDSIHPNRRQLFEQADTLMAYCQSVAADRTSSQVSLFGADQAGAS-RPRLKSVEPWVGPE 954

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKK- 1008
            R + E   +GFY SGHPL+  +  LR+  +    E+V    +G++  + A VV ++Q++ 
Sbjct: 955  RLDQELSAVGFYLSGHPLEDMEGALRRKRVTFVAEAVQRAEQGHDAFMMAGVVRRRQERA 1014

Query: 1009 -TRKGSRIGWVTFSEPAKEYEANFFP 1033
              + G +  +VTFS+P  E+E  F P
Sbjct: 1015 SAKNGEKFAFVTFSDPTGEFECLFPP 1040


>gi|310816591|ref|YP_003964555.1| DNA polymerase III subunit alpha [Ketogulonicigenium vulgare Y25]
 gi|308755326|gb|ADO43255.1| DNA polymerase III subunit alpha [Ketogulonicigenium vulgare Y25]
          Length = 1163

 Score =  981 bits (2537), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1054 (48%), Positives = 693/1054 (65%), Gaps = 48/1054 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VH+ YSLLEGA+   ++     A   PA+A+TDTNNLF ALEFS+KA  +GIQ
Sbjct: 4    PKFIHLRVHTEYSLLEGAIHAGDLPKLAKAAGMPAVAVTDTNNLFCALEFSEKASKSGIQ 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGCQ+D+     ++   + + P P    IVLL  +  GY  L+ L S  YL D+G   
Sbjct: 64   PIIGCQVDLTYM-KVEAGKRAEDPAP----IVLLAQSEVGYANLMALNSCAYL-DKGGAL 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++  + L     EGLI LTGG  GP+ R         A   L     ++ +RLYV LQR
Sbjct: 118  PQVTTADLAA-HAEGLICLTGGPDGPLGRMIRAGQDNAARLLLERLAAIYPNRLYVELQR 176

Query: 189  HR------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            H         +   E   ++ AY   LPLVATN++ F  E  YEAHD L+ +A    V Q
Sbjct: 177  HPIEGGLPDAEAQTERPFIEWAYALNLPLVATNDAYFKDEGFYEAHDALICIAEGAYVDQ 236

Query: 243  KD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            ++ R ++TP HY K+++EM ++F+DLPEALENTVEIA+RC+F      PILPRF + E +
Sbjct: 237  QEPRRKLTPQHYFKSQAEMATLFADLPEALENTVEIAKRCAFKAYKRDPILPRFADDEVE 296

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                    ELR ++ AGL+ RL     A   H   Y  RL+FE+N+I +M F GYFLIVA
Sbjct: 297  --------ELRRQSKAGLQARLDVIPHAAELHV--YWDRLEFEMNIIEKMGFPGYFLIVA 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK   IPVGPGRGSGAGS+ AYALTITD+DP+R+SLLFERFLNP+R+SMPDFDID
Sbjct: 347  DFIKWAKDEGIPVGPGRGSGAGSLVAYALTITDLDPIRYSLLFERFLNPERVSMPDFDID 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRR+EVI+YVQ KYG +RVAQIITFG+L +KAA+RDVGR LQMPY QVDRL K+IP 
Sbjct: 407  FCMDRREEVIQYVQGKYGRDRVAQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKMIPV 466

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   PVS+ QA+ D+ R RE    +P V RLL+ +Q++EGL R+ASTHAAG+VIGDRPL 
Sbjct: 467  EGVKPVSIAQALKDEPRLREEADREPVVARLLDYAQQVEGLLRNASTHAAGVVIGDRPLD 526

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ--------- 591
             LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++  + +         
Sbjct: 527  HLVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVSLIRKSGRHLHEAA 586

Query: 592  ---------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
                     +G + D+  IP DD ++Y L +   T+ +FQ+ES+GM  AL+ M+P CIED
Sbjct: 587  DGTVLYTPPKGAEDDIGAIPLDDAKSYQLYSDAKTVAVFQVESTGMMDALKRMKPTCIED 646

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            I+ALV+LYRPGP++NI  Y   KNG+ +I SIHP ID +L ETQG+I+YQEQVMQIAQ++
Sbjct: 647  IVALVALYRPGPMENIPTYCEVKNGQREITSIHPTIDFILAETQGIIVYQEQVMQIAQVM 706

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGF 761
            +GYSL  AD+LRRAMGKKI EEM K++ +F +GA + + I +  A  +F+LL KFA+YGF
Sbjct: 707  AGYSLGGADLLRRAMGKKIAEEMAKERPKFTTGAKETHNIDEKKAGEVFDLLEKFANYGF 766

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPS 820
            NKSHAAAYAV+SYQTAW+K ++ VEF+A  M  ++   +K+  + Q+ R+   +  +PP 
Sbjct: 767  NKSHAAAYAVVSYQTAWLKANHAVEFMAGVMNCDIHLTDKLAVYFQEVRRGLKLGTVPPC 826

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
            VN     F V D ++ Y+L A+K VG    R ++EA A KPF +L DF  RVD K++ +R
Sbjct: 827  VNRSLATFDVVDGKLVYALGALKNVGVDAMRLVVEARAGKPFVTLFDFARRVDLKRVGKR 886

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE +  AGA D    +R ++L+SLD +  Y+  V + R++   ++F  E G    +  L
Sbjct: 887  PLEMMARAGAFDVLDSNRRRVLESLDALVAYSVAVHEQRSSNQVSLFG-EGGDDLPEPRL 945

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLA 998
                   ++ R   E + +GFY SGHPLD + P LR+ G+    E     +      R+A
Sbjct: 946  PNVPDWLAAERLGEEFKAIGFYLSGHPLDDHMPGLRRKGVLTLSEVEGKAQNGAFLARMA 1005

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +V  +Q++K+ +G+R  +   S+P+ +YE   F
Sbjct: 1006 GVVSGRQERKSARGNRFAFAQLSDPSGQYEVTIF 1039


>gi|83954740|ref|ZP_00963451.1| DNA polymerase III subunit alpha [Sulfitobacter sp. NAS-14.1]
 gi|83841024|gb|EAP80195.1| DNA polymerase III subunit alpha [Sulfitobacter sp. NAS-14.1]
          Length = 1177

 Score =  980 bits (2534), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1068 (47%), Positives = 693/1068 (64%), Gaps = 58/1068 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++P F+HL+ HS YSLLEGAL L  + D       PA+A+TDTNN+F+ALEFS     
Sbjct: 1    MAQAPRFIHLRTHSEYSLLEGALRLKKLPDLCKGADMPALALTDTNNMFAALEFSVAMAG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+D+           G+ P    P +VLL  +  GY+ L++L S +Y+ D+
Sbjct: 61   AGVQPIIGCQVDL----AYVKVQPGEKPRDPAP-VVLLAQSEAGYENLMKLNSCLYI-DK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G    ++ L  L+ +   GLI LTGG+ GP+ +         AE  +      F DRLYV
Sbjct: 115  GGALPQVTLEELEALNG-GLICLTGGAGGPVGQLLQGGQRPAAEALMARLHGAFADRLYV 173

Query: 185  NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G D      +  E   V++AY   +PLVATN+  F + + YEAHD L+ +A   
Sbjct: 174  ELQRHPGEDGQPVAEQLTERGFVEMAYDMGIPLVATNDVYFPNADMYEAHDALICIADGA 233

Query: 239  VVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q+ +R R+T  HY K+++EMV++F+DLPEA+ENTVEIA+RC+F+     PILP+F +
Sbjct: 234  YVDQQHERRRLTAQHYFKSQAEMVTLFADLPEAIENTVEIAKRCAFMAYRRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E ++++++    L+N+    L+V      I      ++Y +RLDFEL +I  M F GYF
Sbjct: 294  DEIEELKRQAHEGLKNR----LKV------IPHATTVEEYEKRLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK NNIPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKDNNIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIQYVQRKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++ A+AD+ R RE    +  V RLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALADEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD--------- 587
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D         
Sbjct: 524  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKSSGRHL 583

Query: 588  ---------FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                     F    G+  D++ IP DD  +Y L  +  T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  HVAADGTELFEPPEGLIDDIATIPLDDEASYKLYASAKTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG+ +  S+HP ID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPVYCEVKNGQRERESVHPSIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  GA  NG+ K  A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMANGVDKKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R+   +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKRLELPWV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA----SADKPFDSLEDFCSRVD 873
            PP VN     FKV +  + Y+L A+K VG    + I E       DKPF +L D   RVD
Sbjct: 824  PPCVNRSDATFKVVEGALVYALGALKNVGVEAMKLITEGRKVDGVDKPFATLFDLARRVD 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             K++ +R LE L  +GA D    +R ++ QSLD +  Y+  + + + +   ++F  E G 
Sbjct: 884  LKRVGKRPLEMLARSGAFDQLDNNRRRVWQSLDGLVSYSAAIHEQKASNQVSLFG-EAGD 942

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKG--------YE 984
               +  +       ++ R   E + +GFY SGHPLD Y  P+ RK    G          
Sbjct: 943  DLPEPRIVPCDDWEAAERLTEEFKAVGFYLSGHPLDDYMGPMKRKSATGGVPFLTLDELT 1002

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            E V+     N RLA +V  +Q++K+ +G+R  +   S+P   YE   F
Sbjct: 1003 EKVSVKGAMNARLAGIVAGRQERKSARGNRFAFAQLSDPTGAYEVTLF 1050


>gi|114569928|ref|YP_756608.1| DNA polymerase III subunit alpha [Maricaulis maris MCS10]
 gi|114340390|gb|ABI65670.1| DNA polymerase III, alpha subunit [Maricaulis maris MCS10]
          Length = 1147

 Score =  980 bits (2534), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/1031 (50%), Positives = 687/1031 (66%), Gaps = 30/1031 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+V S YS+LEGA+ +  +++       PAIA+TDTNNLF ALEFS+    AG+QPI
Sbjct: 7    FVHLRVRSPYSVLEGAIRMPKMVEACQTHGMPAIALTDTNNLFGALEFSEVLSGAGVQPI 66

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC L + + D     + G+   P   ++VLL     GY  L+ L S  YL   G +   
Sbjct: 67   VGCTLKVRLGD----PHPGERAEPD-GTLVLLAQDEVGYGNLMALSSAAYLDVDGSEEPH 121

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I  S + +    GLI LTGG  G ++R         A   L      FGDRLYV LQRH 
Sbjct: 122  IPFSLVLDHAA-GLIALTGGPDGLLNRLITGGRQPEAATYLDQLASAFGDRLYVELQRH- 179

Query: 191  GYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            G +   E++  +V  AY  +LPLVATN + F  +  ++AHD L+ ++ S+ VS  DR RV
Sbjct: 180  GLEAELEAEDWLVGQAYARDLPLVATNEAYFPDQSMHKAHDALLCISESSFVSVADRRRV 239

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T DHYL    EM + F+DLPEAL NT+EIARRC+F ++ HAPILP F  +      + E 
Sbjct: 240  TADHYLTTPEEMNARFADLPEALTNTIEIARRCAFRVRTHAPILPSFPTEGG----RTEV 295

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL  +A  GL  RLA  +I       DYR RLDFEL++I +M F GYFLIV+DFIQWAK
Sbjct: 296  EELIARAHEGLTDRLA--SINAAAPEADYRARLDFELDIIKQMGFPGYFLIVSDFIQWAK 353

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N+IPVGPGRGSGAGS+ AYALTITD+DPLRF LLFERFLNP+R+SMPDFD+DFCQ+RR 
Sbjct: 354  NNDIPVGPGRGSGAGSLVAYALTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQERRG 413

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVIRYVQ +YGH+RVAQIITFG+LQA+A +RD GR LQ+P   VDRL K++P +PA+PV+
Sbjct: 414  EVIRYVQEQYGHDRVAQIITFGTLQARAVVRDTGRVLQLPLGLVDRLAKMVPANPANPVT 473

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L QA+  + R RE R  D SVD LL ++ KLEGL+R+ASTHAAG+VIGDR LS+LVP+YR
Sbjct: 474  LAQALDIEPRLREMRRDDESVDTLLTVALKLEGLFRNASTHAAGVVIGDRKLSELVPLYR 533

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606
            D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++ ++L ++A  G  V D+  + FDD 
Sbjct: 534  DPRSDIPATQFNMKWVEPAGLVKFDFLGLKTLTVIARALGYIASTGKDVPDIEGLDFDDQ 593

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T+ LL +   +G+FQLESSGMR  L+ M+PD IED+IAL+SLYRPGP+ NI VY +RK 
Sbjct: 594  ATFDLLQSGHAIGVFQLESSGMRDTLKKMKPDAIEDLIALISLYRPGPMKNIDVYVDRKF 653

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+ ++  +H  ++ +L ET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKK KEEMD
Sbjct: 654  GRAEVDCLHADLEGVLSETYGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGKKKKEEMD 713

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            KQK RF+ GA   G+S+  A  IFEL+A+FA YGFNKSHAAAYA I+Y+T ++K +YPVE
Sbjct: 714  KQKVRFLEGAEAKGVSREKASYIFELVAEFAGYGFNKSHAAAYAAIAYRTGYLKANYPVE 773

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+AA M+L+  N +K+  F Q+ R+  + + PP VN    DF V +  I ++L AI+ VG
Sbjct: 774  FMAALMSLDAANTDKLSAFFQEVRRMKLDVRPPDVNASQADFSVEEGTIRFALGAIRNVG 833

Query: 847  TTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 HI+E  +A+ PF  L DF  RVD +++N+R  E+L  AGA D     R +++ S 
Sbjct: 834  FVAMEHIVEERTANGPFRDLYDFAERVDPRQVNKRTFENLAKAGAFDSLDPDRARVMASA 893

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE-----NSSVRFENEQRVLG 960
            + +   AQ   + R +   ++F    G   ++  LE+  +       ++ R + E   +G
Sbjct: 894  ETLISMAQHAAEQRESAQASLF----GGGGEEAQLERPRLPEPDPWTATQRLDAELSAIG 949

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRK-GSRIGW 1017
            FY SGHPLD     L   G+  + E+ A +      +RLA MV  +Q++ + K G R  W
Sbjct: 950  FYLSGHPLDDLTEHLAGRGVVFFAEAPARVADGATALRLAGMVRRRQERVSNKNGERFAW 1009

Query: 1018 VTFSEPAKEYE 1028
             T S+P  E+E
Sbjct: 1010 TTLSDPTGEFE 1020


>gi|144899840|emb|CAM76704.1| DNA polymerase III alpha subunit [Magnetospirillum gryphiswaldense
            MSR-1]
          Length = 1159

 Score =  980 bits (2533), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1041 (48%), Positives = 687/1041 (65%), Gaps = 31/1041 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ H++YSL EGA+ L  ++        PAI I DT NLF ALEFS     AGIQPI
Sbjct: 12   FVHLRTHTAYSLSEGAIKLKQLIKLCEKQMMPAIGIADTGNLFGALEFSTSCADAGIQPI 71

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGCQ+ +  +      + G+ P P    +VLL  +  GY  L++LVS+ YL     ++ +
Sbjct: 72   IGCQVAVRREGEAPARD-GRKPDPDW--LVLLCQSETGYANLLKLVSKAYLETDAGETPQ 128

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L  L E  + GLI+LTGG  GP++R      +  AE  L+   + F  R YV LQRH 
Sbjct: 129  VTLHDL-ETRSAGLILLTGGPKGPVNRLLADGQNDKAEILLVRLAQGFPGRAYVELQRHG 187

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              +  R E  +V LAY H+LPLVATN   F     YEAHD L+ +A    V+Q +R R+T
Sbjct: 188  EENENRAEPGLVNLAYKHDLPLVATNEPFFADRGMYEAHDALICIAEGAYVAQDERRRLT 247

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P+HY K+ +EM  +F+DLPEA +NT+ +A+RC+F++    PILP F     D + + E  
Sbjct: 248  PEHYFKSPAEMRELFADLPEACDNTLVVAQRCAFMVAKRKPILPPF---RMDGLTEAEV- 303

Query: 310  ELRNKAVAGLEVRLAQGAIAKG-------YHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             LR     GL  RL +     G       + A+ YR+R+++E+ VI +M F GYFLIV+D
Sbjct: 304  -LRKMCWDGLAQRLEKHVFQPGMTEEEREHVARPYRERIEYEIGVIEQMGFPGYFLIVSD 362

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K ++IPVGPGRGSGAGS  A+ALTITD+DPLR+ LLFERFLNP+R+SMPDFDIDF
Sbjct: 363  FIQWSKAHDIPVGPGRGSGAGSAVAWALTITDLDPLRWGLLFERFLNPERVSMPDFDIDF 422

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+E IRYVQ+KYG+ +VAQIITFG LQA+A LRDVGR LQMPY QVDR+CK++PN+
Sbjct: 423  CQDRREETIRYVQDKYGYHQVAQIITFGKLQARAVLRDVGRVLQMPYGQVDRICKMVPNN 482

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA PV+L QA+  +   +EAR  D +V  LL++  KLEGLYRHASTHAAG+VIGDR L +
Sbjct: 483  PASPVTLEQALEIEPLLKEARERDEAVAHLLDMGMKLEGLYRHASTHAAGVVIGDRSLDE 542

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT++  ++  + + +G+ VDLS 
Sbjct: 543  LVPLYRDPRSDMPVTQFNMKWVEAAGLVKFDFLGLKTLTVMITAIKHIKKTKGLDVDLSA 602

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY LLT     G+FQLESSGMR  L  M+P+ +ED+IA+V+LYRPGP+D I  
Sbjct: 603  LPLDDQATYELLTRGDAAGVFQLESSGMRDVLRKMRPNQLEDLIAVVALYRPGPMDQIPR 662

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y   K+G E+   +HPL++P+LKET G+++YQEQVMQIAQ+LSGYSL  AD+LRRAMGKK
Sbjct: 663  YIACKHGLEQPDYMHPLLEPILKETFGIMVYQEQVMQIAQVLSGYSLGGADLLRRAMGKK 722

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            IKEEM+ Q++ F+ GA    +    A  IF+ +AKFA+YGFNKSHAAAYA+I+YQTAW+K
Sbjct: 723  IKEEMEAQRKTFVDGAVARAVDGDQASMIFDKVAKFAEYGFNKSHAAAYALIAYQTAWLK 782

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRI 835
             ++P EF+AA+MT EM N +K+  F Q+  +  I+++PP +N     F V     G + +
Sbjct: 783  ANHPAEFMAATMTYEMANTDKLNSFRQELDRLKIKLLPPDINKSQATFSVEKLADGSHAV 842

Query: 836  YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y+LAA+K VG    R I E      P+  L DF  R+D+K+LNRR +E++V AG  D  
Sbjct: 843  RYALAALKNVGEGACRSIAEERERSGPYKDLFDFARRLDTKQLNRRQMENMVRAGVFDSL 902

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R ++ ++ + + +Y     + R +   ++     G  +    LE  S  +   +   
Sbjct: 903  EKNRGKVFKNCEGLLRYGAGEAEQRQSSQMSLLG---GNVAPPPKLENASDWSPHEKLTQ 959

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN---IRLAAMVVSKQQKKTRK 1011
            E   +GFY S HPLD +   L+++G+    E    ++      ++LA  ++SKQ++ + K
Sbjct: 960  EFDAIGFYLSAHPLDAFSKSLKRLGVLKISELPKHLQAGGKSRVKLAGSMLSKQERTSAK 1019

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            GSR  +VT S+ +  YE   F
Sbjct: 1020 GSRYAFVTASDSSGMYEVTCF 1040


>gi|83943739|ref|ZP_00956197.1| DNA polymerase III subunit alpha [Sulfitobacter sp. EE-36]
 gi|83845419|gb|EAP83298.1| DNA polymerase III subunit alpha [Sulfitobacter sp. EE-36]
          Length = 1177

 Score =  980 bits (2533), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1068 (47%), Positives = 692/1068 (64%), Gaps = 58/1068 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++P F+HL+ HS YSLLEGAL L  + D       PA+A+TDTNN+F+ALEFS     
Sbjct: 1    MAQAPRFIHLRTHSEYSLLEGALRLKKLPDLCKGADMPALALTDTNNMFAALEFSVAMAG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+D+           G+ P    P +VLL  +  GY+ L++L S +Y+ D+
Sbjct: 61   AGVQPIIGCQVDL----AYVKVQPGEKPRDPAP-VVLLAQSEAGYENLMKLNSCLYI-DK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G    ++ L  L+ +   GLI LTGG+ GP+ +         AE  +      F DRLYV
Sbjct: 115  GGALPQVTLEELEALNG-GLICLTGGAGGPVGQLLQGGQRPAAEALMARLHGAFADRLYV 173

Query: 185  NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G D      +  E   V++AY   +PLVATN+  F   + YEAHD L+ +A   
Sbjct: 174  ELQRHPGEDGQPVAEQLTERGFVEMAYDMGIPLVATNDVYFPKADMYEAHDALICIADGA 233

Query: 239  VVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q+ +R R+T  HY K+++EMV++F+DLPEA+ENTVEIA+RC+F+     PILP+F +
Sbjct: 234  YVDQQHERRRLTAQHYFKSQAEMVTLFADLPEAIENTVEIAKRCAFMAYRRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E ++++++    L+N+    L+V      I      ++Y +RLDFEL +I  M F GYF
Sbjct: 294  DEIEELKRQAHEGLKNR----LKV------IPHATTVEEYEKRLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK NNIPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKDNNIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIQYVQRKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++ A+AD+ R RE    +  V RLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALADEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD--------- 587
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D         
Sbjct: 524  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKSSGRHL 583

Query: 588  ---------FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                     F    G+  D++ IP DD  +Y L  +  T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  HVAADGTELFEPPEGLIDDIATIPLDDEASYKLYASAKTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG+ +  S+HP ID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPVYCEVKNGQRERESVHPSIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  GA  NG+ K  A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMANGVDKKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R+   +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKRLELPWV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA----SADKPFDSLEDFCSRVD 873
            PP VN     FKV +  + Y+L A+K VG    + I E       DKPF +L D   RVD
Sbjct: 824  PPCVNRSDATFKVVEGALVYALGALKNVGVEAMKLITEGRKVDGVDKPFATLFDLARRVD 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             K++ +R LE L  +GA D    +R ++ QSLD +  Y+  + + + +   ++F  E G 
Sbjct: 884  LKRVGKRPLEMLARSGAFDQLDNNRRRVWQSLDGLVSYSAAIHEQKASNQVSLFG-EAGD 942

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKG--------YE 984
               +  +       ++ R   E + +GFY SGHPLD Y  P+ RK    G          
Sbjct: 943  DLPEPRIVPCDDWEAAERLTEEFKAVGFYLSGHPLDDYMGPMKRKSATGGVPFLTLDELT 1002

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            E V+     N RLA +V  +Q++K+ +G+R  +   S+P   YE   F
Sbjct: 1003 EKVSVKGAMNARLAGIVAGRQERKSARGNRFAFAQLSDPTGAYEVTLF 1050


>gi|83952291|ref|ZP_00961023.1| DNA polymerase III subunit alpha [Roseovarius nubinhibens ISM]
 gi|83837297|gb|EAP76594.1| DNA polymerase III subunit alpha [Roseovarius nubinhibens ISM]
          Length = 1163

 Score =  979 bits (2530), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/1060 (48%), Positives = 690/1060 (65%), Gaps = 56/1060 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL++H+ YSLLEGA+ L  +    A    PA+A+TD+NN+F+ALEFS  A  
Sbjct: 1    MSTAPRFIHLRLHTEYSLLEGAMRLKKLPGLCANMDMPAVAVTDSNNMFAALEFSVSAQG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D    +     ++   P      +VLL     GY+ L++L S +YL  +
Sbjct: 61   AGVQPIMGCQVDFHYDE--AAGDEAIAP------LVLLAQNEAGYENLMKLNSCLYL--R 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G  S+   +    E   EGLI LTGG  GP+ R      + VAE  +    K +  RLY+
Sbjct: 111  GDGSLPHVIIEELERHAEGLICLTGGPDGPVGRLLQAGRAPVAEALVARLAKAYPTRLYI 170

Query: 185  NLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       +R  E   V++AY   LPLVATN+  F ++E +EAHD ++ VA   
Sbjct: 171  ELQRHPGENGQPEAERLTERGHVEMAYAMGLPLVATNDVYFPNKEMFEAHDAMLCVAEGA 230

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q   R R+TP+HYLK   EM ++F+DLPEALENTVEIARRC+F      PILP+F +
Sbjct: 231  YVDQSGPRRRLTPEHYLKTPQEMATLFADLPEALENTVEIARRCAFGCYRRDPILPKFAD 290

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E          ELR  A AGL+ RLA   I      +DY++RLDFEL +I  M F GYF
Sbjct: 291  DEV--------AELRRMANAGLQARLA--VIPHAASVEDYQKRLDFELGIIEGMGFPGYF 340

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 341  LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 400

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ+KYG +RV QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 401  FDIDFCMDRREEVIRYVQDKYGRDRVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 460

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+ QA+A + R RE    +  V+RLL    K+EGL R+ASTHAAG+VIGD
Sbjct: 461  MIPVEGVKPVSIEQALAQEERLREEARREEVVERLLNYGMKVEGLLRNASTHAAGVVIGD 520

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD--------- 587
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D         
Sbjct: 521  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAIDQIKGGGRHL 580

Query: 588  ---------FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                     +    G   D+  IP DD +TY L     T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 581  HQAADGATLYEPPEGAVDDIGQIPLDDAKTYELYARAKTVAVFQVESSGMMDALKRMKPT 640

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG ++  S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 641  CIEDIVALVALYRPGPMENIPTYCEVKNGVKERESVHPLIDHILEETQGIIVYQEQVMQI 700

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKIKE MD ++ +F  GA++NG+ K  A  +F+LL KFA+
Sbjct: 701  AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFAN 760

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ ++   +  +
Sbjct: 761  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVKKGLGLDWL 820

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            PP VN     F V D  ++Y L A+K VG    R I +A  DKPF +L DF  RVD KK+
Sbjct: 821  PPCVNRSEARFIVRDGVLHYGLGALKNVGVDAMRLITQARGDKPFATLYDFARRVDLKKI 880

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE L  AGA D    +R ++  SL+ +  Y+  + + R +   ++F    G   D 
Sbjct: 881  GKRPLEMLARAGAFDELDRNRRRVFDSLEGLMNYSAAIHEQRNSNQVSLF----GEAGDD 936

Query: 938  ITLEK-FSVEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
            +   +   VE+   + R   E R +GFY SGHPLD Y   L++  +K  +E     RG  
Sbjct: 937  LPEPRIMPVEDWLPAERLTEEFRAVGFYLSGHPLDDYMAALKRKDVKTLDEVEMLARGGA 996

Query: 995  I--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +LA +V  +Q++K+ +G+R  +V  S+    YE   F
Sbjct: 997  CIAKLAGVVAGRQERKSARGNRFAFVQLSDTTGGYEVTMF 1036


>gi|16126169|ref|NP_420733.1| DNA polymerase III subunit alpha [Caulobacter crescentus CB15]
 gi|221234940|ref|YP_002517376.1| DNA polymerase III subunit alpha [Caulobacter crescentus NA1000]
 gi|68565608|sp|Q9A700|DPO3A_CAUCR RecName: Full=DNA polymerase III subunit alpha
 gi|239977223|sp|B8GWS6|DPO3A_CAUCN RecName: Full=DNA polymerase III subunit alpha
 gi|13423381|gb|AAK23901.1| DNA polymerase III, alpha subunit [Caulobacter crescentus CB15]
 gi|220964112|gb|ACL95468.1| DNA polymerase III alpha subunit [Caulobacter crescentus NA1000]
          Length = 1143

 Score =  978 bits (2529), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1031 (48%), Positives = 682/1031 (66%), Gaps = 23/1031 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+V S+YSLLEGA+  + I    A  + PA  + D  NLF ALE+S  A  AG+QP
Sbjct: 8    GFVHLRVRSAYSLLEGAIKADQIGKLAAEAKMPAAGLADRANLFGALEYSSYAKDAGVQP 67

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC + +     + +       +   P+++LL     GY  L EL S  YL     +  
Sbjct: 68   IIGCAIPV-----VGIGGGPTERWARAPTLMLLAQNERGYLNLSELSSIAYL--DSAELP 120

Query: 130  RICLSWLQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
               + W +    +EGLI+L+GG+ GP+D  F    +  A   L    ++FGDR YV LQR
Sbjct: 121  EPVVPWAKVAEHSEGLILLSGGTDGPVDALFAAGKTAEASAALAEMHRVFGDRFYVELQR 180

Query: 189  HRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H G  R    E  +V  AY H++PLVATN+  F     Y+AHD L+ ++    V Q +R 
Sbjct: 181  H-GLPRQAAAEPGLVNWAYDHDVPLVATNDVYFAKPGFYDAHDALLCISDGAFVGQDERR 239

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            RVTP+H+ K   EM  +F+DLPEA +NT++IARRC+F++    PILP F   +     + 
Sbjct: 240  RVTPEHWFKPAEEMRKLFADLPEACDNTLDIARRCAFMVHKRDPILPSFPTGDG----RN 295

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E  EL ++A  GL++RL    +      ++Y +RLDFEL +I +M F GYFLIV+DFI+W
Sbjct: 296  EAEELEHQAREGLKMRLE--GLTLSAPEEEYWKRLDFELGIIKKMGFPGYFLIVSDFIKW 353

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             K + IPVGPGRGSGAGS+ A+ LTITD+DPLRF LLFERFLNP+R+SMPDFD+DFCQ+R
Sbjct: 354  GKAHGIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQER 413

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI YVQ KYG +RVAQIITFGSLQA+A LRDVGR +Q+P   VDRLCK++PN+PA P
Sbjct: 414  REEVISYVQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGLVDRLCKMVPNNPAAP 473

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+L QAI  + R ++A+  D +V   L+++ +LEGL+R+ASTHAAG+VIGDRPL+QL P+
Sbjct: 474  VTLAQAIDLEPRLKQAKKEDANVSACLDVALQLEGLFRNASTHAAGLVIGDRPLTQLTPL 533

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            Y+D RSDLP TQFNMKW+E AGL+KFDFLGLKTLT+L +++  L +RG ++DL  +PFDD
Sbjct: 534  YKDPRSDLPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAVKHLKKRGFEIDLGKLPFDD 593

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +TY LL +  T+G+FQLES GMR  L  M+   IE+I AL+SLYRPGP+DNI  + + K
Sbjct: 594  AKTYELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDNIDTFVDCK 653

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G++ + ++HP ++ +LKET GVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKK KEEM
Sbjct: 654  FGRKPVDTLHPSLEAVLKETYGVIVYQEQVMQIAQILAGYSLGEADLLRRAMGKKKKEEM 713

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D QK RF+SGA +  + +  + +IFEL+AKFA YGFNKSHAAAYA ISYQTAW+K + PV
Sbjct: 714  DLQKIRFVSGAKEKNVPEEQSGSIFELVAKFAGYGFNKSHAAAYAFISYQTAWLKANTPV 773

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF AASM+L++ N +K+  F QDAR+F I +  P VN    DF+V +  + Y+L AI+ V
Sbjct: 774  EFFAASMSLDLSNTDKLAVFHQDARRFGITVRAPDVNRSGADFEVENGEVLYALGAIRNV 833

Query: 846  GTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            G    +H++   A+  PF  + DF  R+D +++N+R +E+L  AGA D    +R Q++ S
Sbjct: 834  GLEAMKHLVAVRAEGGPFRDVFDFVERIDPRQVNKRAIENLARAGAFDSIHKNRAQIVAS 893

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
             D +  +AQ    +R      +F  + G  + +  L K    N     + E   +GFY +
Sbjct: 894  ADVLIAHAQSCHADRQGGQGGLFGSDPG--AGRPRLSKTENWNQVDLLDEELSAVGFYLT 951

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGN--NIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            GHPL+    +LR+       E++A         R+  +V  +Q++ ++ G +  +V+ S+
Sbjct: 952  GHPLEDMVGMLRRRRTVMLAEAMAQAEAGAEAFRMCGVVRRRQERASQSGEKFAFVSLSD 1011

Query: 1023 PAKEYEANFFP 1033
            P  EYE  + P
Sbjct: 1012 PTGEYEVLYPP 1022


>gi|86136285|ref|ZP_01054864.1| DNA polymerase III subunit alpha [Roseobacter sp. MED193]
 gi|85827159|gb|EAQ47355.1| DNA polymerase III subunit alpha [Roseobacter sp. MED193]
          Length = 1170

 Score =  978 bits (2527), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1063 (47%), Positives = 694/1063 (65%), Gaps = 55/1063 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+ H+ YSLLEGAL L  + D     + PAIA+TD+NNLFSALEFS  A  
Sbjct: 1    MTNAPRFIHLRSHTEYSLLEGALRLKKLPDLCKKHEMPAIAVTDSNNLFSALEFSVSASK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+   +       G+ P P  P +VLL  +  GY+ L++L S +YL   
Sbjct: 61   AGVQPIVGCQIDLRFVE----PAPGERPQPPAP-LVLLAQSEAGYEHLMKLNSCLYL--- 112

Query: 125  GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             +Q   +    L+++ T    +I L+GG  GP+ R         AE+ +   K +F DRL
Sbjct: 113  -RQGSELPYVTLEDLATNAGDVICLSGGPDGPVGRLLRQGQRPAAEELMQRLKAIFADRL 171

Query: 183  YVNLQRHRGYDRYRESQV------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            YV LQRH G D   E++       V++AY  +LPLVATN+  F + E YEAHD ++ +A 
Sbjct: 172  YVELQRHPGEDGQPEAEKLSERGHVEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAE 231

Query: 237  STVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
               V Q + R R+T  HY K++ EMV++F+DLPEA+ENTVEIA+RC+F   +  PILP+F
Sbjct: 232  GAYVDQSEPRRRLTAQHYFKSQEEMVALFADLPEAIENTVEIAKRCAFKAYLRDPILPKF 291

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
             + E          ELR  A  GL+ RLA   I      ++Y++RLDFEL +I  M F G
Sbjct: 292  ADDEV--------AELRRIANEGLQNRLA--VIPHAVSVEEYQERLDFELGIIEGMGFPG 341

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SM
Sbjct: 342  YFLIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSM 401

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL
Sbjct: 402  PDFDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRL 461

Query: 476  CKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP +   P+S+  ++ ++ R  E    +P VDRLL+   ++EGL R A THAAG+VI
Sbjct: 462  SKLIPVEGVKPMSIVDSLKEEPRLAEEAKNEPVVDRLLKYGMQVEGLLRSAGTHAAGVVI 521

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
            GDRPL  LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q G 
Sbjct: 522  GDRPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLIKQSGR 581

Query: 595  KV------------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             +                  +++ IP DD  TY L ++  T+ +FQ+ES+GM  AL+ M+
Sbjct: 582  DLHVAADGTPLYEPPTGAVNEINAIPLDDKPTYDLYSSAKTVAVFQVESTGMMDALKRMK 641

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            P CIEDI+ALV+LYRPGP++NI  Y   KNG +KI S+HPLID +L+ETQG+I+YQEQVM
Sbjct: 642  PTCIEDIVALVALYRPGPMENIPTYCEVKNGLKKIESVHPLIDHILEETQGIIVYQEQVM 701

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            QIAQ+++GYSL  AD+LRRAMGKKIKE MD ++ +F  GA +NG+    A  +F+LL KF
Sbjct: 702  QIAQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAGENGVPAKKASEVFDLLEKF 761

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQ 815
            A+YGFNKSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   +K+  + ++ ++   + 
Sbjct: 762  ANYGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLGLP 821

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD----KPFDSLEDFCSR 871
             +PP VN     F V +  + Y+L A+K VG    R + EA  D    +PF ++ DF  R
Sbjct: 822  YVPPCVNRSLATFNVVNGELVYALGALKNVGVDVMRLVAEARNDDGHERPFVNIFDFARR 881

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V+ KK+ +R LE L  AGA D    +R ++  SL+ +  Y+  + + + +   ++F  E 
Sbjct: 882  VNLKKIGKRPLEMLARAGAFDQLDRNRRRVFDSLEGLVNYSNAIHEQKNSNQVSLFG-EA 940

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATI 990
            G    +  L        + R   E + +GFY SGHPLD Y P L++  +   +E  V   
Sbjct: 941  GDDLPEPRLANTPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVMVKAE 1000

Query: 991  RGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            RG  + ++A +V  +Q++K+ +G+R  +   S+    YE   F
Sbjct: 1001 RGPFLAKMAGVVAGRQERKSARGNRFAFAQLSDTTGGYEVTIF 1043


>gi|126737384|ref|ZP_01753119.1| DNA polymerase III subunit alpha [Roseobacter sp. SK209-2-6]
 gi|126721969|gb|EBA18672.1| DNA polymerase III subunit alpha [Roseobacter sp. SK209-2-6]
          Length = 1170

 Score =  978 bits (2527), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1061 (47%), Positives = 695/1061 (65%), Gaps = 51/1061 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+ H+ YSLLEGAL L  + D     + PAIA+TD+NNLFSALEFS  A  
Sbjct: 1    MTNTPRFIHLRTHTEYSLLEGALRLKKLPDLCKKHEMPAIAVTDSNNLFSALEFSVSASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+D+   +       G+ P P  P +VLL     GY+ L++L S +YL  Q
Sbjct: 61   AGVQPIIGCQVDLRYFE----PAPGERPKPPAP-LVLLAQNEAGYEHLMKLNSCLYL-RQ 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G +   + L  L E+  + +I L+GG  GP+ R         AE+ +   K +F DRLYV
Sbjct: 115  GGELPHVTLEELAELAGD-VICLSGGPDGPVGRLLQQGQRPAAEELMQRLKAIFPDRLYV 173

Query: 185  NLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       ++  E   V++AY  +LPLVATN+  F + E YEAHD ++ +A   
Sbjct: 174  ELQRHPGEQGQPEAEKLSERGHVEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K++ EMV++F+DLPEA+ENTVEIA+RC+F+     PILP+F +
Sbjct: 234  YVDQAEPRRRLTAQHYFKSQEEMVALFADLPEAIENTVEIAKRCAFMAYRRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E          ELR  A  GL+ RLA   I      ++Y++RLDFEL +I  M F GYF
Sbjct: 294  DEV--------AELRRIANEGLQQRLA--VIPHAVSVEEYQERLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S+  ++ ++ R RE    +  VDRLL+   ++EGL R A THAAG+VIGD
Sbjct: 464  LIPVEGVKPMSIVDSLKEEPRLREEAENEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL  LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q G  +
Sbjct: 524  RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDL 583

Query: 597  ------------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               ++ IP DD  TY L +   T+ +FQ+ES+GM  AL+ M+P+
Sbjct: 584  HVAEDGSQLYEPPEGAANQINAIPLDDAVTYKLYSAAKTVAVFQVESTGMMDALKRMKPN 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG ++I S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPTYCEVKNGLKQITSVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++ Y+L  AD+LRRAMGKKIKE MD ++ +F  GA++NG+ K  A  +F+LL KFA+
Sbjct: 704  AQVMANYTLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   EK+  + ++ ++   +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTEKLAIYFEEVKKGLGLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA----SADKPFDSLEDFCSRVD 873
            PP VN     F V +  + Y+L A+K VG    R + EA      ++PF S+ DF  RV+
Sbjct: 824  PPCVNRSEATFNVVNGELVYALGALKNVGVDVMRLVAEARREDGQERPFVSIFDFARRVN 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             KK+ +R LE +  AGA D    +R ++ +SL+ +  Y+  V   + +   ++F  E G 
Sbjct: 884  LKKVGKRPLEMMTRAGAFDQLDRNRRRVFESLEALVNYSAAVHDQKNSNQVSLFG-EAGD 942

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RG 992
               +  L        + R   E + +GFY SGHPLD Y P L++  +   +E +A   RG
Sbjct: 943  DLPEPRLAGTPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVMAKAERG 1002

Query: 993  NNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + ++A +V  +Q++K+++G+R  +   S+    YE   F
Sbjct: 1003 PFMAKMAGVVAGRQERKSQRGNRFAFAQLSDTTGAYEVTIF 1043


>gi|89070902|ref|ZP_01158137.1| DNA polymerase III subunit alpha [Oceanicola granulosus HTCC2516]
 gi|89043541|gb|EAR49752.1| DNA polymerase III subunit alpha [Oceanicola granulosus HTCC2516]
          Length = 1166

 Score =  976 bits (2524), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1051 (47%), Positives = 689/1051 (65%), Gaps = 47/1051 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VH+ YSLLEGA+ + ++    A  + PA+A+TDTNN+F ALEFS+ A  AG+QPI
Sbjct: 7    FIHLRVHTEYSLLEGAVPVKSLPGLAAGAEMPAVAVTDTNNMFCALEFSEYAAKAGVQPI 66

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GCQLD+           G  P    P +VLL  +  GY  L++L S  YL  + +   +
Sbjct: 67   LGCQLDV----TYVTPEPGAKPEAPAP-VVLLAQSEAGYMNLMKLNSCAYLEGRAEWP-Q 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L  L   G EGLI LTGG  GP+ R         A+  +   K ++GDRLY+ LQRH 
Sbjct: 121  VTLQELAAHG-EGLICLTGGPDGPVGRLLRAGQRARAQALVERLKAIYGDRLYMELQRHP 179

Query: 191  G------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK- 243
            G       +R  E   V++AY  ++PLVATN+  F   + YEAHD L+ +A    V Q+ 
Sbjct: 180  GEAGAPEAERLSERGHVEMAYALDIPLVATNDVYFPKTDLYEAHDALICIAEGAYVDQQA 239

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R R+TP +Y K++ EM ++F+DLPEALENTVEIARRC++  +  APILPRF + E +  
Sbjct: 240  PRRRLTPQNYFKSQQEMATLFADLPEALENTVEIARRCAYKAEKRAPILPRFADDEVE-- 297

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                  ELR +A  GL  RLA   I      ++Y++RLDFEL++I  M F GYFLIVADF
Sbjct: 298  ------ELRRQANEGLAARLA--VIPHAAPVEEYQKRLDFELDIIEGMGFPGYFLIVADF 349

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR++LLFERFLNP+R+SMPDFDIDFC
Sbjct: 350  IKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYALLFERFLNPERVSMPDFDIDFC 409

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQ+PY QVD+L K+IP + 
Sbjct: 410  MDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQLPYMQVDKLSKMIPVEG 469

Query: 484  AHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              PVS++ A+AD+ R REA   +  V RLL   Q++EGL R+ASTHAAG+VIGDRPL +L
Sbjct: 470  VKPVSIEKALADEPRLREAAKNEEVVGRLLSYGQQIEGLLRNASTHAAGVVIGDRPLDEL 529

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV------ 596
            VP+Y+D RS++P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G  +      
Sbjct: 530  VPLYQDPRSEMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLILKSGRNLHEAADG 589

Query: 597  ------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
                         ++LIP DD  TY L +   T+ +FQ+ESSGM  AL  M+P CIEDI+
Sbjct: 590  SRLYEPAPGAENQMNLIPLDDERTYELYSKARTVAVFQVESSGMMDALRRMKPTCIEDIV 649

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ALV+LYRPGP++NI  Y   KNG      +HP +D +L ETQG+I+YQEQVMQIAQ ++G
Sbjct: 650  ALVALYRPGPMENIPKYCEVKNGISDRDKLHPSVDHILDETQGIIVYQEQVMQIAQEMAG 709

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YSL  AD+LRRAMGKKI+E MD ++ +FI+GA  NG+    A+ ++ LL KFA+YGFNKS
Sbjct: 710  YSLGGADLLRRAMGKKIQEAMDAERPKFIAGAKANGVDDKKALEVWNLLDKFANYGFNKS 769

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNT 823
            HAAAYAV+SYQT W+K ++PVEF+A  M  ++   +K+  + Q+ ++   +   PP VN 
Sbjct: 770  HAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFQELKKGLGLPWDPPCVNR 829

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                F V + R+ Y+L A+K VG    + I+EA   KPF ++ DF  R D K++ +R LE
Sbjct: 830  SEATFDVQEGRLLYALGALKNVGVEAMKLIVEARDGKPFSNVYDFARRTDLKRVGKRSLE 889

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
             L  AGA D    +R ++ +SLD +  Y+  V + R +   ++F  + G    +  L   
Sbjct: 890  MLARAGAFDELDPNRRRVFESLDALTAYSAAVHEQRQSNQSSLFG-DGGDDLPEPRLPGV 948

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMV 1001
                 + R   E + +GFY SGHPLD Y   L++  +   +E +A   G    +++A  V
Sbjct: 949  PDWLPAERLAEEFKAVGFYLSGHPLDDYLAPLKRKQVLTLDEVMAKAAGGACIVKMAGTV 1008

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             S+Q++K+ +G+R  +V  S+P  +YE   F
Sbjct: 1009 ASRQERKSARGNRFAFVQLSDPTGQYEVTMF 1039


>gi|254477258|ref|ZP_05090644.1| DNA polymerase III, alpha subunit subfamily, putative [Ruegeria sp.
            R11]
 gi|214031501|gb|EEB72336.1| DNA polymerase III, alpha subunit subfamily, putative [Ruegeria sp.
            R11]
          Length = 1170

 Score =  976 bits (2524), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1061 (47%), Positives = 693/1061 (65%), Gaps = 51/1061 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++P F+HL+ H+ YSLLEGA+ L  + D     + PAIA+TD+NNLF+ALEFS  A  
Sbjct: 1    MTQNPRFIHLRTHTEYSLLEGAVRLKKLPDLCKKYEMPAIAVTDSNNLFAALEFSVSASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+   D       G+ P P  P +VLL  +  GY+ L++L S +Y+  +
Sbjct: 61   AGVQPIMGCQVDLRFTD----PAPGERPKPPAP-LVLLAQSETGYEHLMKLNSCLYM-RE 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G +   + L  L +   + +I L+GG  GP+ R         AE  +   K +F DRLYV
Sbjct: 115  GSELAHVTLEELAQYAGD-VICLSGGPDGPVGRLLQMGQRSAAEALMQRLKAIFPDRLYV 173

Query: 185  NLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       ++  E   +++AY  +LPLVATN+  F + E YEAHD ++ +A   
Sbjct: 174  ELQRHPGEHGQPEAEQLTERGHIEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233

Query: 239  VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K++ EMV++F+DLPEALENTVEIA+RC+F+     PILP+F +
Sbjct: 234  YVDQVEPRRRLTAQHYFKSQEEMVALFADLPEALENTVEIAKRCAFMAYRRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E          ELR  A  GL+ RLA   I      ++Y++RLDFEL +I  M F GYF
Sbjct: 294  DEV--------AELRRIANEGLQQRLA--VIPHAVSVEEYQERLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S+  ++ ++ R RE    +  VDRLL+   ++EGL R A THAAG+VIGD
Sbjct: 464  LIPVEGVKPMSIADSLKEEPRLREEAENEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----- 591
            RPL  LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q     
Sbjct: 524  RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDL 583

Query: 592  -------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                          G +  ++ IP DD  TY L +   T+ +FQ+ES+GM  AL+ M+P 
Sbjct: 584  HIAADGTQLYDPPEGAENQINAIPLDDKVTYDLYSRAKTVAVFQVESTGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPVYCEVKNGQREITSVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++ Y+L  AD+LRRAMGKKIKE MD ++ +F  GA++NG+    A  +F+LL KFA+
Sbjct: 704  AQVMANYTLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVPAKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   +K+  + ++ ++   +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLGLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM----EASADKPFDSLEDFCSRVD 873
            PP VN     F V    + Y+L A+K VG    R +     E+  DKPF +L DF  RVD
Sbjct: 824  PPCVNRSEATFNVVKGELVYALGALKNVGVEAMRLVTAARRESGQDKPFATLFDFARRVD 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             KK+ +R LE +V AGA D    +R ++ +SL  +  Y+  +++ + +   ++F  E G 
Sbjct: 884  LKKVGKRPLEMMVRAGAFDQLDSNRRRVFESLGALVDYSAAIQEQKNSNQVSLFG-EAGE 942

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RG 992
               +  L        + R   E + +GFY SGHPLD Y P L++  +   +E  A   RG
Sbjct: 943  DLPEPRLPNVPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVTAKAERG 1002

Query: 993  NNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + ++A +V  +Q++K+ +G+R  +   S+    YE   F
Sbjct: 1003 PFMAKMAGVVAGRQERKSARGNRFAFAQLSDTLGAYEVTLF 1043


>gi|84683471|ref|ZP_01011374.1| DNA polymerase III, alpha subunit [Maritimibacter alkaliphilus
            HTCC2654]
 gi|84668214|gb|EAQ14681.1| DNA polymerase III, alpha subunit [Rhodobacterales bacterium
            HTCC2654]
          Length = 1171

 Score =  976 bits (2523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1065 (47%), Positives = 697/1065 (65%), Gaps = 58/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+VH+ YSLLEGA+ +  +     +   PA+A+TDTNN+F ALEFS  A  
Sbjct: 1    MAATPRFIHLRVHTEYSLLEGAVPVKKLAGLCESMDMPAVAVTDTNNMFCALEFSVTASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+ +           G+ P P  P +VLL     GY+ L++L S +YL   
Sbjct: 61   AGVQPIIGCQVTV----AFDTPEPGEQPRPGAP-VVLLAQNEGGYENLMKLNSCLYLDKH 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     + L+ L++  + GLI LTGG+ GP+       +   A++ +  F ++F DRLYV
Sbjct: 116  GALP-EVTLAELEQY-SAGLICLTGGAEGPVGHWLQQGNRAKAQELMTWFHRVFADRLYV 173

Query: 185  NLQRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             LQRH G        ++  E   V++AY   +PLVATN+  F   + YEAHD L+ +A  
Sbjct: 174  ELQRHPGEGGQLTEPEQKTERGFVEMAYAMGIPLVATNDVYFPKTQLYEAHDALICIAEG 233

Query: 238  TVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V Q++ R  +TP HY K+  EM ++F+DLPEA+ENTVEIARRC+F+     PILP+F 
Sbjct: 234  AYVDQQEPRRHLTPQHYFKSPQEMATLFADLPEAIENTVEIARRCAFMAYRRDPILPKFA 293

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            + E D        ELR +A  GLE RLA   I      ++Y  RL+FEL +I  M F GY
Sbjct: 294  DDEVD--------ELRRQAKEGLEARLA--VIPHAAPVEEYEARLEFELGIIEGMGFPGY 343

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI+W+K N IP+GPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMP
Sbjct: 344  FLIVADFIKWSKDNGIPIGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMP 403

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC DRR+E IRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL 
Sbjct: 404  DFDIDFCMDRREETIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463

Query: 477  KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            KLIP +   PVS+ QA+ D+ R RE   A+  V+RLL  ++++EGL R+ASTHAAG+VIG
Sbjct: 464  KLIPVEGVKPVSITQALKDEPRLREEARAEEVVERLLRYAEQVEGLLRNASTHAAGVVIG 523

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            DRPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D +  +G  
Sbjct: 524  DRPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAIDLIHGQGRD 583

Query: 596  V------------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            +                   ++LIP DD +TY L  +  T+ +FQ+ES+GM  AL  M+P
Sbjct: 584  LHIGPDGAEIYTPAEGGENQINLIPLDDEKTYRLYASAKTVAVFQVESTGMMDALRRMKP 643

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             CIEDI+ALV+LYRPGP++NI  Y   KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQ
Sbjct: 644  TCIEDIVALVALYRPGPMENIPTYCEVKNGQREIESVHPLIDHILEETQGIIVYQEQVMQ 703

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ ++GYSL  AD+LRRAMGKKIKE MD ++ +F  GA++ G+ K  A  +F+LL KFA
Sbjct: 704  IAQEMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAEKGVDKKKASEVFDLLEKFA 763

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQI 816
            +YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R+  +I+I
Sbjct: 764  NYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLGVYAEEVRRGLDIEI 823

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA----SADKPFDSLEDFCSRV 872
            +PP VN     F V + R+ Y + A+K VG    + I+EA      +KPF +L D   RV
Sbjct: 824  VPPCVNRSEAMFCVSEGRVVYGIGALKNVGVEAMKLIVEARKVEGREKPFVNLYDVARRV 883

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D K++ +R +E L  AGA D    +R ++ +SLD +  Y+  + + R +   ++F    G
Sbjct: 884  DLKRVGKRPMEMLARAGAFDELDANRRRVFESLDALVSYSAAIHEQRDSAQVSLF----G 939

Query: 933  TFSDKITLEKFSVENSSV---RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
               D +   + S     +   R   E + +GFY SGHPLD Y   L++ G+   EE    
Sbjct: 940  EAGDDLPEPRLSNAPDWLPNERLAEEHKAIGFYLSGHPLDDYMAALKRKGVVTLEELTKK 999

Query: 990  I-RGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + R   + ++A  V +KQ++K+ KG+R  +V  ++P    E   F
Sbjct: 1000 VERAPCVAKIAGAVSAKQERKSAKGNRFAFVAMTDPTGACEITVF 1044


>gi|126725821|ref|ZP_01741663.1| DNA polymerase III subunit alpha [Rhodobacterales bacterium HTCC2150]
 gi|126705025|gb|EBA04116.1| DNA polymerase III subunit alpha [Rhodobacterales bacterium HTCC2150]
          Length = 1170

 Score =  976 bits (2523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1064 (47%), Positives = 690/1064 (64%), Gaps = 57/1064 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VHS YSLLEGA+ +  +   +     PA+A+TDTNNLF+ALE S+    
Sbjct: 1    MTNDPRFIHLRVHSEYSLLEGAMRVKKLAGLVKKSNMPAVALTDTNNLFAALEVSETLAK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPIIGCQ+DI  +       +G+TP P    +V L     GY+ L++L S +YL   
Sbjct: 61   EGLQPIIGCQVDIAAE-----VARGETP-PAPAPLVFLAQNEVGYENLMKLNSCLYLDKA 114

Query: 125  GKQSVRICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            G     +  + + E+    +GLI LTGG+ GPI +     S   A+  +    ++FGDRL
Sbjct: 115  GA----LPSATMAEVAQYNDGLICLTGGADGPIGQLLQSGSLPAAKAMMSELAQVFGDRL 170

Query: 183  YVNLQRHRGYDRYRESQV------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            YV LQRH G +  ++++       V++AY   LPLVATN+  F + E +EAHD LM ++ 
Sbjct: 171  YVELQRHPGAEGPQQAEAKTERGFVEMAYEMNLPLVATNDVYFPNTEMFEAHDALMCISQ 230

Query: 237  STVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
               V Q D R ++T  HY K++ EM+++F+DLPEA+ENTVEIA+RC+F      PILP+F
Sbjct: 231  GAYVDQLDSRRQLTDQHYFKSQQEMITLFADLPEAIENTVEIAKRCAFKTYKRDPILPKF 290

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
             + E D        ELR +A AGL+ RL    I      ++Y +RLDFEL +I  M F G
Sbjct: 291  ADDEVD--------ELRLQAHAGLKARLE--VIPHATSVEEYEKRLDFELGIIEGMGFPG 340

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SM
Sbjct: 341  YFLIVADFIKWAKDHEIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSM 400

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL
Sbjct: 401  PDFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRL 460

Query: 476  CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             K+IP +   PVS++ A+AD+ R RE   A+  V+RLL   Q++EGL R+ASTHAAG+VI
Sbjct: 461  SKMIPVEGVKPVSIEKALADEPRLREEAKAEEVVERLLRYGQQVEGLLRNASTHAAGVVI 520

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
            GDRPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D +   G 
Sbjct: 521  GDRPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTIVQNAVDLIKASGR 580

Query: 595  KV------------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             +                  D++ IP DD  +Y L     T+ +FQ+ESSGM  AL  M+
Sbjct: 581  SLHVGADGRQLYEPLAGTENDINAIPLDDEASYELYAAAKTIAVFQVESSGMMDALRRMK 640

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            PDCIEDIIALV+LYRPGP++NI  +   KNG  +   +HP ID +L ETQG+I+YQEQVM
Sbjct: 641  PDCIEDIIALVALYRPGPMENIPKFCEVKNGLSERDKLHPTIDHILDETQGIIVYQEQVM 700

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            QIAQ ++GYSL  AD+LRRAMGKK++E MD +K +FI G+S+NG+ +  A  +++LL KF
Sbjct: 701  QIAQEMAGYSLGGADLLRRAMGKKLQEAMDAEKPKFIKGSSENGVDEKKAREVWDLLDKF 760

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ----- 811
            A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  +  + R+     
Sbjct: 761  ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDLHLTDKLAVYADEVRKPTDRG 820

Query: 812  -FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
               I+I+PP VN     F V + R+ Y+L A+K VG    R I  A  DKPF +L D   
Sbjct: 821  GMGIEIIPPCVNRSDAVFSVSEGRVVYALGALKNVGVEAMRLITGARGDKPFVTLFDLAR 880

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            R D K++ +R +E L  AGA D    +R ++ +SLD +  Y+  + + R +   ++F  E
Sbjct: 881  RADLKRVGKRPMEMLARAGAFDELDRNRARVSRSLDALVSYSAAIHEQRASNQVSLFG-E 939

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             G    +  L        + R   E   +GFY SGHPLD Y   L++ G+    E+   +
Sbjct: 940  AGDDLPEPRLTPCDDWLPAERLSEEFTSIGFYLSGHPLDDYMVALKRSGVMTLHEATQKV 999

Query: 991  RGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             G    ++LA  +  +Q++K+ +G+R  +V  S+   +YE   F
Sbjct: 1000 AGGAAVVKLAGTISGRQERKSARGNRFAFVQLSDTTGQYEVTMF 1043


>gi|149914036|ref|ZP_01902568.1| DNA polymerase III subunit alpha [Roseobacter sp. AzwK-3b]
 gi|149812320|gb|EDM72151.1| DNA polymerase III subunit alpha [Roseobacter sp. AzwK-3b]
          Length = 1167

 Score =  975 bits (2520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/1061 (48%), Positives = 687/1061 (64%), Gaps = 54/1061 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP F+HL+VH+ YSLLEGA+ L ++         PA+A+TDTNN+F+ALEFS  A  
Sbjct: 1    MSSSPRFIHLRVHTEYSLLEGAVRLKSLAGLCEKAGMPAVAVTDTNNMFAALEFSVTASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPI+GCQ+D+D  +    T  G+   P  P +VLL     GY+ L++L S +YL   
Sbjct: 61   AGIQPIMGCQVDLDYLE----TQPGERAKPPAP-LVLLAQNEAGYENLMKLNSCLYLRGD 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q   + L+ L E   +G+I LTGG  GP+ R         A+  +      F DRLYV
Sbjct: 116  G-QLPHVTLAEL-EAHAQGVICLTGGPDGPVGRLLQAGQRPAAKALMGQLLAAFADRLYV 173

Query: 185  NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G D      R  E   V++AY   LPLVATN+  F     YEAHD L+ VA  T
Sbjct: 174  ELQRHPGEDGAPEAERLTERGFVEMAYAMGLPLVATNDVYFPDAGMYEAHDALLCVAEGT 233

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K   EM ++F+DLPEALENTVEIARRC+F      PILPRF +
Sbjct: 234  YVDQAEPRRRLTAQHYFKTPQEMATLFADLPEALENTVEIARRCAFGAYRRDPILPRFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E D        ELR +A  GLE RLA   I      ++Y +RL+FEL +I  M F GYF
Sbjct: 294  DEVD--------ELRRQAKEGLEARLA--VIPHAASVEEYHKRLEFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK+ +IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKEQDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVD+L K
Sbjct: 404  FDIDFCMDRREEVIQYVQRKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDKLSK 463

Query: 478  LIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+Q A+A + R REA  ++  VDRLL    K+EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIQQALAQEDRLREAARSEEVVDRLLNYGMKVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD--------- 587
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++          
Sbjct: 524  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAIGQIHAEGRDL 583

Query: 588  ---------FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                     +    G + D+  IP DD +TY L     T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  HIAADGSPIYEPFEGAENDIGQIPLDDAKTYELYARARTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KN   +   +HPLID +L ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPKYCEVKNALSERDRLHPLIDHILDETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ ++GY+L  AD+LRRAMGKKI+  MD ++ +FI+GA  NG+    A+ ++ LL KFA+
Sbjct: 704  AQEMAGYTLGGADLLRRAMGKKIQAAMDAERPKFIAGAKANGVDDAKALEVWNLLDKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++   +   
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLQLPYA 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            PP VN     F+V    ++Y+L A+K VG    R I+E   DKPF +L D   RVD K++
Sbjct: 824  PPCVNRSDAVFQVRGGVLHYALGALKNVGVEAMRLIVEGRGDKPFATLYDVARRVDLKRI 883

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE L  AGA D    +R ++  S++ +  Y+  +   +T+   ++F    G   D 
Sbjct: 884  GKRPLEMLARAGAFDELDRNRRRVFDSIEPLMNYSAAIFDQKTSSQVSLF----GEAGDD 939

Query: 938  ITLEKFS-VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE--SVATIRG 992
            +   + S VE+   + R   E + +GFY SGHPLD Y   LR+  +K  +E  ++A  +G
Sbjct: 940  LPEPRLSPVEDWLPAERLTEEFKAIGFYLSGHPLDDYMGALRRKDVKTLDEVTAMAEQKG 999

Query: 993  NNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + ++A +V  +Q++K+ +G+R  +V  S+    +E   F
Sbjct: 1000 ALVAKMAGVVSGRQERKSARGNRFAFVQLSDTTGGFEVTLF 1040


>gi|110681190|ref|YP_684197.1| DNA polymerase III subunit alpha [Roseobacter denitrificans OCh 114]
 gi|109457306|gb|ABG33511.1| DNA polymerase III, alpha subunit [Roseobacter denitrificans OCh 114]
          Length = 1183

 Score =  975 bits (2520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1070 (47%), Positives = 685/1070 (64%), Gaps = 64/1070 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+ HS YSLLEGAL L  +         PA+A+TD NN+F+ALEFS     AG+Q
Sbjct: 5    PRFIHLRTHSEYSLLEGALRLKKLPSMCRDAGMPALALTDKNNMFAALEFSVAMSGAGVQ 64

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+GCQ+D+      +   + + P P    +VLL  +  GY+ L+ L S +Y+ D+G   
Sbjct: 65   PILGCQVDVAYV-TAQPGERERAPAP----VVLLAQSEAGYENLMRLNSCLYI-DKGGAL 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++ LS L E    G+I LTGG  GP+ +         A+  +   K  F DRLY+ LQR
Sbjct: 119  PQVTLSEL-ESNAGGIICLTGGPDGPVGQLLQLGQMPAAQALMDRLKAAFQDRLYIELQR 177

Query: 189  HRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            H G       +R  E   V++AY  +LPLVATN+  F + + YEAHD L+ +A    V Q
Sbjct: 178  HPGESGQPEKERLTERGFVEMAYAMDLPLVATNDVYFPNSDMYEAHDALICIAEGAYVDQ 237

Query: 243  KD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            +D R R+T  HY K++SEMV++F+DLPEA+ENTVEIA+RC+F      PILP+F + E +
Sbjct: 238  QDDRRRLTNQHYFKSQSEMVALFADLPEAIENTVEIAKRCAFQAYRRDPILPKFADDEVE 297

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                    ELR +A AGL+ RL    I      +DY +RLDFEL +I  M F GYFLIVA
Sbjct: 298  --------ELRKQAHAGLKARLE--VIPHAASVEDYTKRLDFELGIIEGMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK+  IPVGPGRGSGAGS+ AYALT+TD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFIKWAKEQGIPVGPGRGSGAGSLVAYALTVTDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K+IP 
Sbjct: 408  FCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPV 467

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   PVS++ A+AD+ R RE    +  V RLL   Q++EGL R+ASTHAAG+VIGDRPL 
Sbjct: 468  EGVKPVSIEKALADEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGDRPLD 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD------------- 587
             LVP+Y+D RS++P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++             
Sbjct: 528  ALVPLYQDPRSEMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVEQIMASGRPLHIAA 587

Query: 588  -----FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
                 +    G + D++ IP DD  +Y L  +  T+ +FQ+ESSGM  AL+ M+P CIED
Sbjct: 588  DGTELYEPAPGTENDINAIPLDDERSYKLYASAKTVAVFQVESSGMMDALKRMKPTCIED 647

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            I+ALV+LYRPGP++NI  Y   KNG  ++ SIHPLID +L+ETQG+I+YQEQVMQIAQ++
Sbjct: 648  IVALVALYRPGPMENIPTYCEVKNGLRELQSIHPLIDDILEETQGIIVYQEQVMQIAQVM 707

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +GYSL  AD+LRRAMGKKI EEM K++ +F  GA  NG+ K  A  +F+LL KFA+YGFN
Sbjct: 708  AGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAVANGVDKDKAREVFDLLEKFANYGFN 767

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821
            KSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R+   +  +PP V
Sbjct: 768  KSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVRKRLELPWVPPCV 827

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM---------EASADKPFDSLEDFCSRV 872
            N     FKV D  + Y+L A+K VG    + I          E S DKPF +L D   RV
Sbjct: 828  NRSDATFKVADGALVYALGALKNVGVEAMKLITDGRRADPGDEGSPDKPFATLFDLARRV 887

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D K++ +R LE L  +GA D    +R ++  +LD +  Y+  + + + +   ++F  E G
Sbjct: 888  DLKRVGKRPLEMLARSGAFDALDANRRRVFGALDALVNYSAAIHEQKASNQVSLFG-EAG 946

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK----------MGIKG 982
                +  L        + R   E + +GFY SGHPLD Y   L++          M +  
Sbjct: 947  DDLPEPRLHPVDDWQPAERLSEEFKAVGFYLSGHPLDDYMGQLKRKWGNDRGVPFMTLDE 1006

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              E V      N RLA +V  +Q++K+ +G+R  +   S+P   YE   F
Sbjct: 1007 LTEKVTERGAMNARLAGIVAGRQERKSARGNRFAFAQMSDPTGAYEVTLF 1056


>gi|294676350|ref|YP_003576965.1| DNA polymerase III subunit alpha [Rhodobacter capsulatus SB 1003]
 gi|294475170|gb|ADE84558.1| DNA polymerase III, alpha subunit [Rhodobacter capsulatus SB 1003]
          Length = 1169

 Score =  975 bits (2520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1061 (47%), Positives = 690/1061 (65%), Gaps = 60/1061 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VH+ YSLLEGA+ +  ++    A   PAIA+TDTN +F+ALEFS  A  AG+Q
Sbjct: 4    PRFIHLRVHTEYSLLEGAVPVKKLIKLCDAMNMPAIAVTDTNAMFAALEFSVLAQGAGLQ 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+GCQ+ +  +    +   G+ P    P +VLL     GY  L++L S +Y+ D+G Q 
Sbjct: 64   PIVGCQVSVAYE----VAAPGEKPRLPAP-VVLLAQNEAGYMNLMKLSSCLYV-DKGGQL 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT--FKKLFGDRLYVNL 186
             ++ L  L E   EGLI L+GG+ GP+ +      SQ  + RLL       +  RLYV L
Sbjct: 118  PQVTLEDL-EAHAEGLICLSGGAEGPVGK--LLQHSQAGKARLLMERLAACYPTRLYVEL 174

Query: 187  QRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            QRH G        +R  E   V++AY   LPLVATN+  F   + YEAHD ++ +A    
Sbjct: 175  QRHPGEGGQLTEGERMTERPFVEMAYDLGLPLVATNDVYFPKSDMYEAHDAMICIAEGAY 234

Query: 240  VSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            V Q + R R+TP HYLK  +EM ++F+DLPEALENTVEIA+RC+F      PILPRF + 
Sbjct: 235  VDQIEPRRRLTPQHYLKTEAEMAALFADLPEALENTVEIAKRCAFAAFKRKPILPRFADD 294

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E +        ELR +A  GL  RLA   I       +Y +RL FEL +I +M F GYFL
Sbjct: 295  EVE--------ELRRQAWEGLRARLA--VIPHAVPVAEYEERLKFELGIIEQMGFPGYFL 344

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFI+W K   IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDF
Sbjct: 345  IVADFIKWGKSQGIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDF 404

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RDVGR LQM Y  VD+L K+
Sbjct: 405  DIDFCMDRREEVIKYVQGKYGRDKVGQIITFGALLSKAAVRDVGRVLQMSYGHVDKLSKM 464

Query: 479  IPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   PVS++ A+AD+ R REA  ++  V RLL  +Q +EGL R+ASTHAAG+VIGDR
Sbjct: 465  IPVEGVKPVSIEKALADEPRLREAAKSEEVVARLLNYAQAIEGLLRNASTHAAGVVIGDR 524

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
            PL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + + G  + 
Sbjct: 525  PLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKSGRPLH 584

Query: 597  -----------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
                             +++LIP DD +TY L     T+ +FQ+ES+GM  AL  M+P C
Sbjct: 585  VNPLGETLYTPAEGAANEINLIPIDDAKTYELYAAAKTVAVFQVESTGMMDALRRMKPTC 644

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            IEDI+ALV+LYRPGP++NI  Y   K+G   + S+HP IDP+LKETQG+I+YQEQVMQIA
Sbjct: 645  IEDIVALVALYRPGPMENIPTYCEVKHGLRPLESLHPTIDPILKETQGIIVYQEQVMQIA 704

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFAD 758
            Q+++GYSL  AD+LRRAMGKKI EEM K++ +FI GA + + I    A  +F+LL KFA+
Sbjct: 705  QVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFIEGAKATHNIDAKKAGEVFDLLEKFAN 764

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYA++SYQTAW+K ++PVEF+A  M  ++   +K+  +  +AR+   I+++
Sbjct: 765  YGFNKSHAAAYAIVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAIYTAEARRGLGIEVV 824

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            PP VN     F V D ++ Y+L A+K VG    R I +A  DKPF  L +F  R D K++
Sbjct: 825  PPCVNRSLATFDVVDQKLIYALGALKNVGVEAMRLIEKAREDKPFRDLVEFARRCDLKRI 884

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE L  AGA D    +R ++ +SL+++  ++  V + +++   ++F    G   D 
Sbjct: 885  GKRPLEMLARAGAFDKLDPNRKRVFESLESLMAWSAAVAEAKSSAQVSLF----GEAGDD 940

Query: 938  ITLEKFSVENSSV---RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
            +   + +  +  +   R   E + +GFY SGHPLD Y P L++  +    +  A   G  
Sbjct: 941  LPPPRLADTDDWLPGERLAEEHKAIGFYLSGHPLDDYLPALKRKKVLTLADVTAKALGQG 1000

Query: 995  I---RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++A  V ++ ++K+ KG+R  +V+ S+P   YE   F
Sbjct: 1001 PFIGKIAGQVAARSERKSAKGNRFAFVSLSDPTGPYEVTVF 1041


>gi|163737024|ref|ZP_02144442.1| DNA polymerase III, alpha subunit [Phaeobacter gallaeciensis BS107]
 gi|161389628|gb|EDQ13979.1| DNA polymerase III, alpha subunit [Phaeobacter gallaeciensis BS107]
          Length = 1170

 Score =  975 bits (2520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1061 (47%), Positives = 689/1061 (64%), Gaps = 51/1061 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+ H+ YSLLEGAL L  + D     + PAIA+TD+NNLF+ALEFS  A  
Sbjct: 1    MTNAPRFIHLRTHTEYSLLEGALRLKKLPDLCKKHEMPAIAVTDSNNLFAALEFSVAASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+   +       G+ P P  P +VLL  +  GY+ L++L S +Y+  +
Sbjct: 61   AGVQPIMGCQVDLRFTE----PTPGERPKPPAP-LVLLAQSETGYEHLMKLNSCLYM-RE 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G +   + L  L    +E +I L+GG  GP+ R         AE  +   K +F DRLYV
Sbjct: 115  GSELAHVTLEELA-AHSEDVICLSGGPDGPVGRLLQMGQRPAAEALMQRLKAMFPDRLYV 173

Query: 185  NLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       ++  E   V++AY  +LPLVATN+  F + E YEAHD ++ +A   
Sbjct: 174  ELQRHPGEHGQPEAEQATERGHVEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K++ EMV++F+DLPEA+ENTVEIA+RC+F+     PILP+F +
Sbjct: 234  YVDQAEPRRRLTAQHYFKSQEEMVALFADLPEAIENTVEIAKRCAFMAYRRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E          ELR  A  GL+ RLA   I      +DY++RLDFEL +I  M F GYF
Sbjct: 294  DEV--------AELRRIANEGLQQRLA--VIPHAVSVEDYQERLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S+  ++ ++ R RE    +  VDRLL+   ++EGL R A THAAG+VIGD
Sbjct: 464  LIPVEGVKPMSIVDSLREEPRLREEAENEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--- 593
            RPL  LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q G   
Sbjct: 524  RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDL 583

Query: 594  -VKVD--------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
             V  D              ++ IP DD  TY L +   T+ +FQ+ES+GM  AL+ M+P 
Sbjct: 584  HVAADGTQLYDPPEGAENQINAIPLDDTVTYDLYSRAKTVAVFQVESTGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG  KI S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPVYCEVKNGLRKIQSVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++ Y+L  AD+LRRAMGKKIKE MD ++ +F  GA++NG+    A  +F+LL KFA+
Sbjct: 704  AQVMANYTLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVPAKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   +K+  + ++ ++  ++  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLSLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM----EASADKPFDSLEDFCSRVD 873
            PP VN     F V    + Y+L A+K VG    R +     E+  DKPF +L DF  RVD
Sbjct: 824  PPCVNRSEATFNVVKGELVYALGALKNVGVEAMRLVTAARRESGEDKPFATLFDFARRVD 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             KK+ +R LE L  AG  D    +R ++  SL  +  Y+  V   R +   ++F  E G 
Sbjct: 884  LKKVGKRPLEMLARAGGFDQLDPNRRRVFDSLGALVDYSSAVHDQRNSSQVSLFG-EAGE 942

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RG 992
               +  L        + R   E + +GFY SGHPLD Y P L++  +   +E  A   RG
Sbjct: 943  DLPEPRLPGTPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVTAKAERG 1002

Query: 993  NNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + ++A +V  +Q++K+ +G+R  +   S+ +  YE   F
Sbjct: 1003 PFMAKMAGVVAGRQERKSARGNRFAFAQLSDTSGGYEVTLF 1043


>gi|254512245|ref|ZP_05124312.1| putative DNA polymerase III alpha subunit subfamily [Rhodobacteraceae
            bacterium KLH11]
 gi|221535956|gb|EEE38944.1| putative DNA polymerase III alpha subunit subfamily [Rhodobacteraceae
            bacterium KLH11]
          Length = 1166

 Score =  974 bits (2517), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1053 (47%), Positives = 691/1053 (65%), Gaps = 47/1053 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VH+ YSLLEGA+ L  +       + PA+A+TDTN++FSALEFS  A  AG+Q
Sbjct: 5    PRFIHLRVHTEYSLLEGAVRLKKLPGLCEQMEMPAVAVTDTNSMFSALEFSVAASGAGVQ 64

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+GCQ+D+           G+ P    P +VLL  +  GY+ L++L S +Y+ D+G Q 
Sbjct: 65   PIMGCQVDL----TYVQAQPGEKPKAPAP-LVLLAQSELGYENLMKLSSCLYV-DKGGQL 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++ L  L +  ++GLI LTGG  GP+           AE  +     +F DRLY+ LQR
Sbjct: 119  PQVTLEELAD-RSDGLICLTGGPDGPVGHLLQQGQRPAAEALVDRLAGMFPDRLYMELQR 177

Query: 189  HRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            H G D      R  E   V++AY  +LPLVATN+  F + + YEAHD L+ +A    V Q
Sbjct: 178  HPGEDGQPEAERLTERGHVEMAYAKDLPLVATNDVYFPTSDMYEAHDALICIAEGAYVDQ 237

Query: 243  KD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            ++ R R+T  HY K++ EMV++F+DLPEA+ENTVEIA+RC+F+     PILP+F + E  
Sbjct: 238  QEGRRRLTAQHYFKSQQEMVTLFADLPEAIENTVEIAKRCAFMAYRRDPILPKFADDEV- 296

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                    ELR  A  GL+ RLA   I      ++Y++RLDFEL +I  M F GYFLIVA
Sbjct: 297  -------AELRRIANEGLQKRLA--VIPHAVTPEEYQERLDFELGIIEGMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQWAK  +IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDID
Sbjct: 348  DFIQWAKDEDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K+IP 
Sbjct: 408  FCMDRREEVIRYVQQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPV 467

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   PVS++ A+ D+ R R+   ++  V+RLL   Q++EGL R+ASTHAAG+VIGDRPL 
Sbjct: 468  EGVKPVSIEKALKDEPRLRDEARSEEVVERLLTYGQQVEGLLRNASTHAAGVVIGDRPLD 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS- 599
             LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G  + ++ 
Sbjct: 528  ALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFKSGRDLHIAP 587

Query: 600  -----------------LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
                              IP DD  TY L +   T+ +FQ+ESSGM  AL+ M+PDCIED
Sbjct: 588  DGTELYEPADGAVNQINAIPLDDEATYKLYSAAKTVAVFQVESSGMMDALKRMKPDCIED 647

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            IIALV+LYRPGP++NI  +   KN   +  ++HP ID +L ETQG+I+YQEQVMQIAQ +
Sbjct: 648  IIALVALYRPGPMENIPKFCEVKNKLSQRDTLHPSIDHILDETQGIIVYQEQVMQIAQEM 707

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +GYSL  AD+LRRAMGKKI+E MD ++ +F+ GA++N + +  A  ++ LL KFA+YGFN
Sbjct: 708  AGYSLGGADLLRRAMGKKIQEAMDAERPKFLKGAAENDVDEAKATEVWNLLDKFANYGFN 767

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821
            KSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   +K+  + ++ R+  ++  +PP V
Sbjct: 768  KSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLDLPYVPPCV 827

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
            N     F V D  + Y+L A+K VG      ++E  A KPF +L DF  RVD KK+ +R 
Sbjct: 828  NRSQSTFDVVDGELVYALGALKNVGVEAMNLVVEGRAGKPFVNLFDFARRVDLKKVGKRP 887

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE L  AGA D    +R ++ +SLD + +Y+  + + + +   ++F  E G    +  L 
Sbjct: 888  LEMLARAGAFDQLDKNRRRVFESLDPLVQYSAAIHEQKNSNQVSLFG-EAGDDLPEPRLS 946

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAA 999
              S    + R   E + +GFY SGHPLD Y P L++  +   +E +   R   +  ++A 
Sbjct: 947  PSSDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKQVLTLDEVMEKARSGPLIAKMAG 1006

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V  +Q++K+ +G+R  +   S+P   +E   F
Sbjct: 1007 VVAGRQERKSARGNRFAFAQLSDPTGAFEVTLF 1039


>gi|163740552|ref|ZP_02147946.1| DNA polymerase III subunit alpha [Phaeobacter gallaeciensis 2.10]
 gi|161386410|gb|EDQ10785.1| DNA polymerase III subunit alpha [Phaeobacter gallaeciensis 2.10]
          Length = 1170

 Score =  973 bits (2516), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1061 (47%), Positives = 688/1061 (64%), Gaps = 51/1061 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+ H+ YSLLEGAL L  + D     + PAIA+TD+NNLF+ALEFS  A  
Sbjct: 1    MTNAPRFIHLRTHTEYSLLEGALRLKKLPDLCKKHEMPAIAVTDSNNLFAALEFSVAASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+   +       G+ P P  P +VLL  +  GY+ L++L S +Y+  +
Sbjct: 61   AGVQPIMGCQVDLRFTE----PTPGERPKPPAP-LVLLAQSETGYEHLMKLNSCLYM-RE 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G +   + L  L    +E +I L+GG  GP+ R         AE  +   K +F DRLYV
Sbjct: 115  GSELAHVTLEELA-AHSEDVICLSGGPDGPVGRLLQMGQRPAAEALMQRLKAMFPDRLYV 173

Query: 185  NLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       ++  E   V++AY  +LPLVATN+  F + E YEAHD ++ +A   
Sbjct: 174  ELQRHPGEHGQPDAEQATERGHVEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K++ EMV++F+DLPEA+ENTVEIA+RC+F+     PILP+F +
Sbjct: 234  YVDQAEPRRRLTAQHYFKSQEEMVALFADLPEAIENTVEIAKRCAFMAYRRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E          ELR  A  GL+ RLA   I      +DY++RLDFEL +I  M F GYF
Sbjct: 294  DEV--------AELRRIANEGLQQRLA--VIPHAVSVEDYQERLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S+  ++ ++ R RE    +  VDRLL+   ++EGL R A THAAG+VIGD
Sbjct: 464  LIPVEGVKPMSIVDSLREEPRLREEAENEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----- 591
            RPL  LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q     
Sbjct: 524  RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDL 583

Query: 592  -------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                          G +  ++ IP DD  TY L +   T+ +FQ+ES+GM  AL+ M+P 
Sbjct: 584  HAAADGTQLYDPPEGAENQINAIPLDDTVTYDLYSRAKTVAVFQVESTGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG  KI S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPVYCEVKNGLRKIQSVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++ Y+L  AD+LRRAMGKKIKE MD ++ +F  GA++NG+    A  +F+LL KFA+
Sbjct: 704  AQVMANYTLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVPAKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   +K+  + ++ ++  ++  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLSLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM----EASADKPFDSLEDFCSRVD 873
            PP VN     F V    + Y+L A+K VG    R +     E+  DKPF +L DF  RVD
Sbjct: 824  PPCVNRSEATFNVVKGELVYALGALKNVGVEAMRLVTAARRESGQDKPFATLFDFARRVD 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             KK+ +R LE L  AG  D    +R ++  SL  +  Y+  V   R +   ++F  E G 
Sbjct: 884  LKKVGKRPLEMLARAGGFDQLDPNRRRVFDSLGALVDYSSAVHDQRNSSQVSLFG-EAGE 942

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RG 992
               +  L        + R   E + +GFY SGHPLD Y P L++  +   +E  A   RG
Sbjct: 943  DLPEPRLPGTPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVTAKAERG 1002

Query: 993  NNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + ++A +V  +Q++K+ +G+R  +   S+ +  YE   F
Sbjct: 1003 PFMAKMAGVVAGRQERKSARGNRFAFAQLSDTSGGYEVTLF 1043


>gi|126733665|ref|ZP_01749412.1| DNA polymerase III subunit alpha [Roseobacter sp. CCS2]
 gi|126716531|gb|EBA13395.1| DNA polymerase III subunit alpha [Roseobacter sp. CCS2]
          Length = 1165

 Score =  973 bits (2515), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1059 (47%), Positives = 688/1059 (64%), Gaps = 52/1059 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+ H+ YSLLEGA+ +  +   +A    PA+A+TD+NN+F ALEFS+ A  
Sbjct: 1    MTNDPRFIHLRTHTEYSLLEGAIPVKKLPGLVAGMGMPAVAVTDSNNMFCALEFSEGASK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPI+GCQ+D+           GK      P IVLL  +  GY  L++L S  YL D 
Sbjct: 61   AGIQPIVGCQVDV----TFATPEPGKRAEAPAP-IVLLAQSEAGYMNLMKLNSCAYL-DA 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              Q  ++ L    +   EGLI L+GG  GP+ R         AE  +     ++ DRLY+
Sbjct: 115  DGQLPQVSLDEFAQY-HEGLICLSGGPDGPVGRLLRQGQRPKAEAIVDRLAAIYTDRLYI 173

Query: 185  NLQRHRG-----YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             LQRH G      +R  E   V++AY   LPLVATN+  F   E YEAHD L+ ++    
Sbjct: 174  ELQRHPGDGLPEAERLSERGHVEMAYAKGLPLVATNDVYFPKTELYEAHDALICISEGAY 233

Query: 240  VSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            V Q++ R R+TP HY+K+  EM ++F+DLPEA+ENTVEIA+RC+F      PILP+F + 
Sbjct: 234  VDQQEARRRLTPQHYMKSPQEMATLFADLPEAIENTVEIAKRCAFKTYKRDPILPKFADD 293

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E          ELR +A  GL+ RLA   I      ++Y +RL+FEL +I  M F GYFL
Sbjct: 294  EV--------AELRRQAEQGLKDRLA--VIPHAAPVEEYEKRLEFELGIIEGMGFPGYFL 343

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFI+WAK   IPVGPGRGSGAGS+ AYAL ITD+DPLR+SLLFERFLNP+R+SMPDF
Sbjct: 344  IVADFIKWAKDEGIPVGPGRGSGAGSLVAYALLITDLDPLRYSLLFERFLNPERVSMPDF 403

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC DRR+EVIRYVQ+KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL K+
Sbjct: 404  DIDFCMDRREEVIRYVQDKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKM 463

Query: 479  IPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   PVS++ A+AD+ R RE    +  VDRLL  +Q++EGL R+ASTHAAG+VIGDR
Sbjct: 464  IPVEGVKPVSIEKALADEPRLREEAKNEEVVDRLLTYAQQVEGLLRNASTHAAGVVIGDR 523

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ------ 591
            PL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + +      
Sbjct: 524  PLDELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVELIKKAGRPLN 583

Query: 592  ------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
                         G + D+  IP DD ++Y L ++  T  +FQ+ESSGM  AL+ M+P+C
Sbjct: 584  IAADGTQLYDVLEGFEYDIGAIPLDDEKSYALYSSAKTTAVFQVESSGMMDALKRMKPNC 643

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            IEDI+ALV+LYRPGP++NI  Y   KNG++ + SIHP ID +L ETQG+I+YQEQVM+IA
Sbjct: 644  IEDIVALVALYRPGPMENIPTYCEVKNGQKDLESIHPSIDHILAETQGIIVYQEQVMEIA 703

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q+++GYSL  AD+LRRAMGKKI EEM K++ +F +GA  NG+    A  +F+LL KFA+Y
Sbjct: 704  QVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEAGAKANGVEPKKAREVFDLLEKFANY 763

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMP 818
            GFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++   I+  P
Sbjct: 764  GFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLGIYFQEVKKGLGIEYTP 823

Query: 819  PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
            P VN     F V D ++ Y+L A+K VG    + I+E   DK F +L DF  R D K+++
Sbjct: 824  PCVNRSMATFDVKDQKLVYALGALKNVGVEAMKLIVEGRGDKEFVNLFDFARRCDLKRIS 883

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            +R LE L  AGA D    +R +++ SLD +  Y+  +   +++   ++F    G   D +
Sbjct: 884  KRPLEMLARAGAFDVLDPNRRRVMMSLDALTAYSAAIHDQKSSNQVSLF----GDAGDDL 939

Query: 939  TLEKFSVENS---SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNN 994
               +         + R   E + +GFY SGHPLD Y  P+ RK  +   +  V   +G  
Sbjct: 940  QEPRLMGGEDWLPAERLAEEFKAIGFYLSGHPLDDYMGPLKRKQVLTLDDVIVRAGKGAA 999

Query: 995  I-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I ++A  +  +Q++K+ +G+R  +V  S+P  +YE   F
Sbjct: 1000 IVKMAGTISGRQERKSARGNRFAFVQLSDPTGQYEVTMF 1038


>gi|329850615|ref|ZP_08265460.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19]
 gi|328840930|gb|EGF90501.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19]
          Length = 1133

 Score =  972 bits (2514), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1031 (48%), Positives = 688/1031 (66%), Gaps = 30/1031 (2%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            ++V S+YSLLEGA+   ++      +  PA+AITD  NL+  LEFSQ    +G+QPI+GC
Sbjct: 1    MRVRSAYSLLEGAIKAYDMGKLAHKNGMPAVAITDRCNLYGGLEFSQSCKDSGVQPIVGC 60

Query: 74   QLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             L +           G TP   +  +P+ V+L    +G+  L +L S  Y+         
Sbjct: 61   ALPV--------KGIGGTPTEKWARIPTFVVLCQNEQGWLNLTKLSSIAYVDSDNMDEPH 112

Query: 131  ICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            +  +W Q     EGL++L+G   GP+D  F  N     +  L +   +FGDR Y+ LQRH
Sbjct: 113  V--TWDQVTAHNEGLLLLSGSYDGPVDVLFRQNRPDEGKAALKSMLDVFGDRFYIELQRH 170

Query: 190  RGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             G  +    E+ +V+ AY +++PLVATN++ F   + Y AH+ L+ ++ ST +  +DR R
Sbjct: 171  EGRPKGSATEAGLVEFAYQNDVPLVATNDAYFAGADMYRAHEALLCISDSTFMGIEDRRR 230

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            VT DH+ K  + M  +F+DL EA +NT+EIARRC+F++    PILPRF         + E
Sbjct: 231  VTKDHWFKPAAAMRELFADLTEACDNTIEIARRCAFLVNKRDPILPRFDTGAG----RNE 286

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + EL  +A  GL++RL Q  +A     +DY  RL+ E+ VI +M F GYFLIV+DFI+W 
Sbjct: 287  DEELAWQAREGLKMRLKQVKLA--CPEEDYWARLEREIGVIQKMGFPGYFLIVSDFIKWG 344

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K + +PVGPGRGSGAGS+ A+ALTITD+DPLRF LLFERFLNP+R+SMPDFDIDFCQ+RR
Sbjct: 345  KSHGVPVGPGRGSGAGSLVAWALTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQERR 404

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI YVQ+KYG +RVAQIITFG+LQA+A LRDVGR +Q+P  QVDRLCK++PN+PA+P 
Sbjct: 405  EEVISYVQHKYGRDRVAQIITFGTLQARAVLRDVGRVMQLPLGQVDRLCKMVPNNPANPT 464

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L QAI  + R REAR  D  V  LL+ + KLEGLYR+ASTHAAGIVIGDRPL++LVP+Y
Sbjct: 465  TLAQAIEIEPRLREARDDDEQVKNLLDTALKLEGLYRNASTHAAGIVIGDRPLTELVPLY 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            RD RSD+P TQFNMKW+E AGL+KFDFLGLKTLT+L ++  +L +RGV ++ S++P DD 
Sbjct: 525  RDPRSDIPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAERYLKKRGVDINFSILPLDDT 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             TY LL +  ++G+FQLES GMR  L  ++   +E+I AL+SLYRPGPIDNI  Y +RK 
Sbjct: 585  ATYELLASGQSIGVFQLESQGMRDTLRKLRCSSLEEITALISLYRPGPIDNIDTYVDRKF 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+ +I  +HP ++P+LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKK KEEMD
Sbjct: 645  GRMEIDMLHPSLEPVLKETYGVIIYQEQVMQIAQVLSGYSLGEADLLRRAMGKKKKEEMD 704

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             QK RF++GA + G+ +  +  IFEL+ KFA YGFNKSHAAAYA ISYQT ++K ++PVE
Sbjct: 705  LQKVRFMTGAKEKGVPEAQSDFIFELVNKFAGYGFNKSHAAAYAFISYQTGYLKANHPVE 764

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F AAS +L++ N +K+  F QDAR+F + I+PP +N    DF V +  + Y+L AI+ VG
Sbjct: 765  FFAASFSLDIANTDKLAVFYQDARRFGVPIVPPDINRSMADFDVENGELLYALGAIRNVG 824

Query: 847  TTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                + +++A  +   F  L DF  R+D K +NRR +E+L  AGA D    +R Q++ + 
Sbjct: 825  FEAMQSVVQAREEGGKFTDLFDFLERIDPKAVNRRAIENLAKAGAFDSIHPNRAQIVAAA 884

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D +  YAQ V   R +   ++F     T + +  L K +      R + E   +GFY SG
Sbjct: 885  DMLIAYAQSVAAERASSQVSLFGS---TDASRPRLPKVAASAGPERLDEELAAIGFYLSG 941

Query: 966  HPLDVYKPILRKMGIKGYEESVA-TIRGNNIRLAAMVVSKQQKKTRKGS--RIGWVTFSE 1022
            HPL     + ++  I  Y E+++  + G++    A +V ++Q++   GS  +  +VT S+
Sbjct: 942  HPLQDMLDVFKRRKITLYAEAMSLALEGHDAFRMAGIVRRRQERAAAGSGEKFAFVTLSD 1001

Query: 1023 PAKEYEANFFP 1033
            P+ EYE  F P
Sbjct: 1002 PSGEYEVLFPP 1012


>gi|149201165|ref|ZP_01878140.1| DNA polymerase III subunit alpha [Roseovarius sp. TM1035]
 gi|149145498|gb|EDM33524.1| DNA polymerase III subunit alpha [Roseovarius sp. TM1035]
          Length = 1166

 Score =  972 bits (2514), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1057 (47%), Positives = 686/1057 (64%), Gaps = 47/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VH+ YSLLEGA+ L  +     A   PA+A+TDTNN+F+ALEFS  A  
Sbjct: 1    MSADPRFIHLRVHTEYSLLEGAMRLKKLPGLCVAAGMPAVAVTDTNNMFAALEFSVSAQG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+    +L    + K P P    +VLL  +  GY+ L++L S +YL   
Sbjct: 61   AGVQPIMGCQVDLAYL-SLAPGERAKPPAP----LVLLAQSECGYENLMKLNSCLYLRGD 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     + L+ L     EG+I LTGG  GP+ R         AE  +    + FGDRLYV
Sbjct: 116  GSLP-HVTLTELAH-HAEGVICLTGGPDGPVGRLLQGGQRPAAEALMQRLAQAFGDRLYV 173

Query: 185  NLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       +R  E  ++++AY   LPLVATN+  F   + YEAHD ++ VA   
Sbjct: 174  ELQRHPGDGGAPEAERLTERGLIEMAYAMGLPLVATNDVYFPKSDMYEAHDAMLCVAEGA 233

Query: 239  VVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q   R R+TP HY K++ EM ++F+DLPEALENTVEIARRC+F      PILP+F +
Sbjct: 234  YVDQSAPRRRLTPQHYFKSQEEMAALFADLPEALENTVEIARRCAFGAYKRNPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E ++++++    L  +             I      +DY +RL+FEL +I  M F GYF
Sbjct: 294  DEVEELRRQARAGLAARLAV----------IPHAAPVEDYDKRLEFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG +RV QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIQYVQEKYGRDRVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++ A+AD+ R RE    +  VDRLL  +Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALADEPRLREEAKNEEVVDRLLTYAQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----- 591
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + +     
Sbjct: 524  RPLDALVPVYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDMIRKAGRPL 583

Query: 592  -------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                          G + D+  IP DD ++Y L  +  T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  NVAADGTVLYDPPEGFEYDIGAIPLDDEKSYRLYASAKTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG  ++ SIHP ID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPTYCEVKNGLRELESIHPSIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  GA +NG+ K  A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMENGVDKKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++  ++   
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLSLPWA 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
             P VN     F V    ++Y+L A+K VG    + I     ++PF +L D   RVD K++
Sbjct: 824  APCVNRSEATFDVQGGVLHYALGALKNVGVEAMKLITVGRGNRPFATLYDVAQRVDLKRV 883

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE L  AGA D    +R ++ +S++ +  Y+  + + + +   ++F  E G    +
Sbjct: 884  GKRPLEMLARAGAFDALDRNRRRVFESIEALMSYSAAIHEQKNSSQVSLFG-EAGDDLPE 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNN-I 995
              L        + R   E + +GFY SGHPLD Y  +LR+  +K  +E  A   RG   +
Sbjct: 943  PRLAPVDDWLPAERLTEEFKAVGFYLSGHPLDDYMTVLRRQDVKTLDEVTAQAERGPALV 1002

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++A +V  +Q++K+ +G+R  +   S+    YE   F
Sbjct: 1003 KMAGVVAGRQERKSARGNRFAFAQLSDTTGGYEVTLF 1039


>gi|167646770|ref|YP_001684433.1| DNA polymerase III subunit alpha [Caulobacter sp. K31]
 gi|167349200|gb|ABZ71935.1| DNA polymerase III, alpha subunit [Caulobacter sp. K31]
          Length = 1143

 Score =  972 bits (2512), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1034 (48%), Positives = 685/1034 (66%), Gaps = 29/1034 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+V S+YSLLEGA+  + I    AA   PA  + D NNLF ALE+S  +   G+QP
Sbjct: 8    GFVHLRVRSAYSLLEGAIKADKIPGLAAAAGMPAAGLVDRNNLFGALEYSVYSKDYGVQP 67

Query: 70   IIGCQLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IIGC L +        +  G  P   +   P+I LLV    GY  L EL S  YL  +  
Sbjct: 68   IIGCALAV--------SGVGAGPTERWARTPTITLLVQNERGYLNLSELSSMAYL--ESG 117

Query: 127  QSVRICLSWLQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            +     + W + +   EGLI+L+GG+ GP+D       +   E  L+  ++ FGDR YV 
Sbjct: 118  EMAEPVVPWAKVVEHAEGLILLSGGTDGPVDALLAAGKTAEGEAALVEMQRAFGDRFYVE 177

Query: 186  LQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            LQRH G  R    E  +V  AY H+ PLVATN+  +   E Y+AHD L+ ++    V Q 
Sbjct: 178  LQRH-GLPRQAAAEPGLVHWAYEHDAPLVATNDVYYAKPELYDAHDALLCISDGAFVGQD 236

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            +R RVTP+H+ K+ ++M  +F+DLPEA +NT++IARRC+F++Q   PILP F   +    
Sbjct: 237  ERRRVTPEHWFKSSADMRKLFADLPEACDNTLDIARRCAFMVQKRDPILPSFPTGDG--- 293

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             + E  EL ++A  GL  RL    +A     + Y  RLDFEL++I +M F GYFLIV+DF
Sbjct: 294  -RSEPEELTHQAKEGLRKRLDGLELA--VDEKVYWDRLDFELSIIIKMGFPGYFLIVSDF 350

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK++ IPVGPGRGSGAGS+ A+ LTITD+DPLRF LLFERFLNP+R+SMPDFDIDFC
Sbjct: 351  IKWAKEHGIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDIDFC 410

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q+RR+EVI YVQ KYG +RVAQIITFGSLQA+A LRDVGR +Q+P   VDRLCK++PN+P
Sbjct: 411  QERREEVIVYVQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGLVDRLCKMVPNNP 470

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A PV+L QAI  + R ++AR  D +V   L+++ +LEGL+R+ASTHAAG+VIGDRPL+QL
Sbjct: 471  AAPVTLAQAIEIEPRLKQARDEDGNVKACLDVALQLEGLFRNASTHAAGVVIGDRPLTQL 530

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
             P+Y+D RSDLP TQFNMKW+E AGL+KFDFLGLKTLT+L +++  L +RG  +DLS +P
Sbjct: 531  TPLYKDPRSDLPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAVKHLKKRGEIIDLSRLP 590

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            FDD +TY LL +  T+G+FQLES GMR  L  M+   IE+I AL+SLYRPGP+DNI  + 
Sbjct: 591  FDDTKTYELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDNIDTFV 650

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            + K  ++ +  +HP ++ +LKET GVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKK K
Sbjct: 651  DCKFDRKPVDYLHPSLEVVLKETYGVIVYQEQVMQIAQILAGYSLGEADLLRRAMGKKKK 710

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EEMD QK RF++GA +  + +  + +IFEL+AKFA YGFNKSHAAAYA+I+YQTAW+K +
Sbjct: 711  EEMDLQKIRFVAGAKEKDVPEAQSGSIFELVAKFAGYGFNKSHAAAYALIAYQTAWLKAN 770

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
             PVEFLAASM+L++ N +K+  F QDAR+F+I + PP VN    DF+V +  + Y+L A+
Sbjct: 771  TPVEFLAASMSLDLSNTDKLAVFHQDARRFDIVVRPPDVNRSGADFEVENGEVLYALGAV 830

Query: 843  KGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            + VG    +H++    +  PF  + DF  RVD K +N+R +E+L  AGA D    +R Q+
Sbjct: 831  RNVGLEAMKHLVAIREEGGPFRDIFDFVERVDPKLVNKRAIENLARAGAFDSLSKNRAQI 890

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
              S D +  + Q +  +R      +F  +    + +  L+K    +     + E   +GF
Sbjct: 891  FASADVLIAHGQSIAADRQGGQHALFGGDPA--AGRPRLKKTEPWSQVDLLDEELAAVGF 948

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGN--NIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y +GHPLD    +LR+       E +          R+  +V  +Q++ ++ G R  +V+
Sbjct: 949  YLTGHPLDDMVGVLRRRRTHMLTEVIPRAEAGMEAFRMCGVVRRRQERASQSGERFAFVS 1008

Query: 1020 FSEPAKEYEANFFP 1033
             S+P+ EYE  F P
Sbjct: 1009 LSDPSGEYEVLFPP 1022


>gi|254488409|ref|ZP_05101614.1| DNA polymerase III, alpha subunit subfamily, putative [Roseobacter
            sp. GAI101]
 gi|214045278|gb|EEB85916.1| DNA polymerase III, alpha subunit subfamily, putative [Roseobacter
            sp. GAI101]
          Length = 1177

 Score =  972 bits (2512), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1068 (46%), Positives = 692/1068 (64%), Gaps = 58/1068 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+ HS YSLLEGAL L  + D   +   PA+A+TDTNN+F+ALEFS     
Sbjct: 1    MAHTPRFIHLRTHSEYSLLEGALRLKKLPDLCKSAGMPAMALTDTNNMFAALEFSIAMSG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+D+           G+ P    P +VLL  +  GY+ L++L S +Y+ D+
Sbjct: 61   AGVQPIIGCQVDL----AYVQAQPGEKPRLPAP-VVLLAQSEPGYENLMKLNSCLYI-DK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     + L  L+ + + G+I LTGG+ GP+ +      +  AE  +      FGDRLYV
Sbjct: 115  GGALPEVTLDQLESL-SAGIICLTGGAGGPVGQLLQTGQAPAAEALMKRLHGAFGDRLYV 173

Query: 185  NLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       +R  E   V++AY   +PLVATN+  F     YEAHD L+ +A   
Sbjct: 174  ELQRHPGENGQPEAERLTERGFVEMAYAMGIPLVATNDVYFPKTSMYEAHDALICIADGA 233

Query: 239  VVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q+ DR R+T  HY K++SEMV++F+DLPEA++NTVEIA+RC+F+     PILP+F +
Sbjct: 234  YVDQQQDRRRLTAQHYFKSQSEMVTLFADLPEAIDNTVEIAKRCAFMAYRRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E ++++++    L+N+    L+V      I      +DY +RLDFEL +I  M F GYF
Sbjct: 294  DEIEELKRQAHEGLKNR----LKV------IPHATSVEDYEKRLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIQYVQRKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++ A+AD+ R R+    +  V RLL+  Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALADEPRLRDEARNEEVVARLLDYGQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD--------- 587
            RPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D         
Sbjct: 524  RPLDRLVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKSSGRHL 583

Query: 588  ---------FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                     F    G+  D++ IP DD  +Y L  +  T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  HIAADGTELFAPPEGLIDDIATIPLDDEASYKLYASAKTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG ++  S+HP ID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPTYCEVKNGIKERESVHPSIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  GA  NG+ K  A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMANGVDKKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R+   +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKRLELPWV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA----SADKPFDSLEDFCSRVD 873
            PP VN     FKV +  + Y+L A+K VG    + I +       D+PF +L D   RVD
Sbjct: 824  PPCVNRSDAMFKVVEGALVYALGALKNVGVEAMKLITQGRKIEGVDRPFATLFDLARRVD 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             K++ +R LE L  +GA D    +R ++  +LD +  Y+  + + + +   ++F      
Sbjct: 884  LKRVGKRPLEMLARSGAFDQLDNNRRRVWNALDGLVSYSAAIHEQKASNQVSLFGEAGDD 943

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKG--------YE 984
              +   L     E ++ R   E + +GFY SGHPLD Y  P+ RK    G          
Sbjct: 944  LPEPRILPCDDWE-AAERLTEEFKAVGFYLSGHPLDDYMGPMKRKSASGGVPFLTLDELT 1002

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            E V+     N RLA +V  +Q++K+ +G+R  +   S+P   YE   F
Sbjct: 1003 EKVSIKGAMNARLAGVVAGRQERKSARGNRFAFAQLSDPTGAYEVTLF 1050


>gi|84514324|ref|ZP_01001688.1| DNA polymerase III subunit alpha [Loktanella vestfoldensis SKA53]
 gi|84511375|gb|EAQ07828.1| DNA polymerase III subunit alpha [Loktanella vestfoldensis SKA53]
          Length = 1188

 Score =  971 bits (2509), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1082 (46%), Positives = 688/1082 (63%), Gaps = 75/1082 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP F+HL+ H+ YSLLEGA+ + ++    A    PA+A+TDTNN+F ALEFS+ A  
Sbjct: 1    MTDSPRFIHLRTHTEYSLLEGAVPVKSLAPLAAGMGMPAVAVTDTNNMFCALEFSEYAVK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQLD+         + GK P P  P IVLL     GY  L++L S  YL D 
Sbjct: 61   AGVQPIIGCQLDL----AYATPDPGKRPEPPAP-IVLLAQNEAGYLNLMKLNSCAYL-DA 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              +  ++ +  L + GT GLI LTGG  GPI R         A+  L     ++  RLYV
Sbjct: 115  AGELPQVTVDELAQYGT-GLICLTGGPDGPIGRLLRHGQQAKADLLLDQLAAIYPQRLYV 173

Query: 185  NLQRHR------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH         +R  E   +++AY   LPLVATN+  F     YEAHD L+ +A   
Sbjct: 174  ELQRHPVDGGLPEAERLSERGHIEMAYAKGLPLVATNDVYFPKSAFYEAHDALICIADGA 233

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q++ R R+TP HY K+  EM ++F+DLPEALENT+EIA+RC+F     APILP+F +
Sbjct: 234  YVDQQEPRRRLTPQHYFKSPREMATLFADLPEALENTIEIAQRCAFKAYKRAPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E          ELR +A  GL  RLA   I      +DY +RLDFEL +I  M F GYF
Sbjct: 294  DEV--------AELRRQAQEGLRARLA--VIPHAASIEDYEKRLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK N IPVGPGRGSGAGS+ AYAL ITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKDNGIPVGPGRGSGAGSLVAYALLITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ+KYG +RV QIITFG+L +KAA+RDVGR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIRYVQDKYGRDRVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++ A+AD+ R RE    +  V RLL  +Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALADEPRLREEAKNEEVVQRLLTYAQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--- 593
            RPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++  +++ + + G   
Sbjct: 524  RPLDELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIHNAVELIRKAGRSL 583

Query: 594  ---------------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                            + D+  IP DD ++Y L  +  T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  NVTADGDVLYQPPVGFEYDIGAIPLDDAKSYALYASAKTIAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG +++ SIHP ID +L ETQG+I+YQEQVM+I
Sbjct: 644  CIEDIVALVALYRPGPMENIPTYCEVKNGIKELESIHPSIDHILAETQGIIVYQEQVMEI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F +GA  NG+    A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEAGAKANGVEPKKAREVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++   I  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLGVYFQEVKKGLGIDYI 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM----------------------E 855
            PP VN     F+V D ++ Y+L A+K VG    + I+                       
Sbjct: 824  PPCVNRSGATFEVQDGKLVYALGALKNVGVEAMKLIVAGREGHPGLDPGPHSAGGPGSAS 883

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
             +  KPF +L DF  R D K++ +R LE L  AGA D    +R +++ SLD +  Y+  +
Sbjct: 884  GATPKPFVNLFDFARRCDLKRIGKRSLEMLARAGAFDVLDRNRRRVMASLDALTAYSAAI 943

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPLDVYK 972
               +++   ++F    G   + +   + +  +    + R   E + +GFY SGHPLD Y 
Sbjct: 944  HDQKSSNQVSLF----GDAGEDLPEPRLAFGDDWLPAERLAEEFKAIGFYLSGHPLDDYM 999

Query: 973  PILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
              L++  +   +E +A        +++A  V  +Q++K+ +G+R  +V  S+P  +YE  
Sbjct: 1000 GALKRKQVLTLDEVIARAEKGAALVKMAGTVSGRQERKSARGNRFAFVQLSDPTGQYEVT 1059

Query: 1031 FF 1032
             F
Sbjct: 1060 MF 1061


>gi|295689601|ref|YP_003593294.1| DNA polymerase III subunit alpha [Caulobacter segnis ATCC 21756]
 gi|295431504|gb|ADG10676.1| DNA polymerase III, alpha subunit [Caulobacter segnis ATCC 21756]
          Length = 1143

 Score =  970 bits (2508), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1031 (48%), Positives = 686/1031 (66%), Gaps = 23/1031 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+V S+YSLLEGA+  + I    AA   PA  + D  NLF ALE+S  A  AG+QP
Sbjct: 8    GFVHLRVRSAYSLLEGAIKADQIGKLAAAAGMPAAGLADRANLFGALEYSSYAKDAGVQP 67

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC L +     + +       +   P+++LL    +GY  L EL S  YL     +  
Sbjct: 68   IIGCALPV-----VGIGGGPTERWARAPTVMLLAQNEQGYLNLSELSSIAYL--DSAELP 120

Query: 130  RICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
               + W + +  ++GLI+L+GG+ GP+D  F    +  A   L    ++FGDR YV LQR
Sbjct: 121  EPVVPWAKVVEYSDGLILLSGGTDGPVDALFAAGKAAEASAALAEMHRVFGDRFYVELQR 180

Query: 189  HRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H G  +    E  +V  AY +++PLVATN+  F   + YEAHD L+ +A    V Q +R 
Sbjct: 181  H-GLPKQAAAEPGLVNWAYENDVPLVATNDVYFAKSQFYEAHDALLCIADGAFVGQDERR 239

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            RVT +H+ K  ++M  +F+DLPEA +NT++IARRC+F++   APILP F   +     + 
Sbjct: 240  RVTSEHWFKPPADMRKLFADLPEACDNTLDIARRCAFMVHKRAPILPSFPTGDG----RN 295

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E  ELR++A  GL++RL    +      ++Y +RL+FEL++I +M F GYFLIV+DFI+W
Sbjct: 296  EAEELRHQAREGLKMRL--DGLTLSAPEEEYWKRLEFELDIIEKMGFPGYFLIVSDFIKW 353

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             K + IPVGPGRGSGAGS+ A+ LTITD+DPLRF LLFERFLNP+R+SMPDFD+DFCQ+R
Sbjct: 354  GKAHGIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQER 413

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI YVQ KYG +RVAQIITFGSLQA+A LRDVGR +Q+P   VDRLCK++PN+PA P
Sbjct: 414  REEVISYVQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGLVDRLCKMVPNNPAAP 473

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+L QAI  + R R+AR  D +V   L ++ +LEGL+R+ASTHAAG+VIGDRPL+QL P+
Sbjct: 474  VTLAQAIDIEPRLRQARDEDANVANCLNVALQLEGLFRNASTHAAGVVIGDRPLTQLTPL 533

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            Y+D RSDLP TQFNMKW+E AGL+KFDFLGLKTLT+L +++  L +RG ++DL  +PFDD
Sbjct: 534  YKDPRSDLPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAVKHLKKRGFEIDLGKLPFDD 593

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +TY LL +  T+G+FQLES GMR  L  M+   IE+I AL+SLYRPGP+DNI  + + K
Sbjct: 594  TKTYELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDNIDTFVDCK 653

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G++ + ++HP ++ +LKET GVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKK KEEM
Sbjct: 654  FGRKPVDTLHPSLEGVLKETYGVIVYQEQVMQIAQILAGYSLGEADLLRRAMGKKKKEEM 713

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D QK RF+SGA +  + +  + +IFEL+AKFA YGFNKSHAAAYA ISYQTAW+K + PV
Sbjct: 714  DLQKIRFVSGAKEKNVPEEQSGSIFELVAKFAGYGFNKSHAAAYAFISYQTAWLKANTPV 773

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF AASM+L++ N +K+  F QDAR+F I +  P VN    DF+V +  + Y+L AI+ V
Sbjct: 774  EFFAASMSLDLSNTDKLAVFHQDARRFGITVRAPDVNRSGADFEVENGEVLYALGAIRNV 833

Query: 846  GTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            G    +H++    +  PF  + DF  R+D +++N+R +E+L  AGA D F  +R Q++ S
Sbjct: 834  GLDAMKHLVAVREEGGPFRDIFDFVERIDPRQVNKRAIENLARAGAFDSFHKNRAQIVAS 893

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
             D +  +AQ    +R      +F  + G  + +  L K    N     + E   +GFY +
Sbjct: 894  ADVLIAHAQSCHADRQGGQGGLFGSDPG--AGRPRLAKTENWNQVDLLDEELSAVGFYLT 951

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGN--NIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            GHPL+    +LR+       E++          R+  MV  +Q++ ++ G +  +V+ S+
Sbjct: 952  GHPLEDMVGMLRRRRTAMLAEAMVQAEAGMEAFRMCGMVRRRQERASQSGEKFAFVSLSD 1011

Query: 1023 PAKEYEANFFP 1033
            P  EYE  F P
Sbjct: 1012 PTGEYEVLFPP 1022


>gi|163744574|ref|ZP_02151934.1| DNA polymerase III, alpha subunit [Oceanibulbus indolifex HEL-45]
 gi|161381392|gb|EDQ05801.1| DNA polymerase III, alpha subunit [Oceanibulbus indolifex HEL-45]
          Length = 1161

 Score =  968 bits (2503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1052 (48%), Positives = 681/1052 (64%), Gaps = 59/1052 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +LEGAL L  +         PA+A+TD+NN+F+ALEFS     AG+QPIIGCQ+D+   +
Sbjct: 1    MLEGALRLKKLPGMCRDAGMPALALTDSNNMFAALEFSVAMAGAGVQPIIGCQVDVAYVE 60

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                   G+ P P  P +VLL  +  GY+ L++L S +YL D+G     + L  L+ +  
Sbjct: 61   ----VQPGEKPRPPAP-VVLLAQSELGYENLMKLNSCLYL-DKGGAVAEVTLDELEALSA 114

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR------GYDRY 195
            + +I LTGG  GP+           AE  +   K  FGDRLYV LQRH         +R 
Sbjct: 115  D-IICLTGGPMGPVGMLLQGGQRPAAETLMARLKAAFGDRLYVELQRHPVDGGQPEPERL 173

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYL 254
             E   V++AY  ++PLVATN+  F   + YEAHD L+ ++    V Q+  R R+T  HY 
Sbjct: 174  TERGFVEMAYAMDIPLVATNDVYFPKPDMYEAHDALICISEGAYVDQQQPRRRLTAQHYF 233

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
            K+++EM ++F+DLPEAL NTVEIA+RC+F+     PILP+F + E          ELR  
Sbjct: 234  KSQAEMATLFADLPEALSNTVEIAKRCAFMAYRRDPILPKFADDEV--------AELRRM 285

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
            A  GL+ RLA   I      +DY++RLDFEL +I  M F GYFLIVADFIQWAK NNIPV
Sbjct: 286  ANEGLKARLA--VIPHAVSVEDYQKRLDFELGIIEGMGFPGYFLIVADFIQWAKDNNIPV 343

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
            GPGRGSGAGS+ AYALT+TD+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVIRYV
Sbjct: 344  GPGRGSGAGSLVAYALTVTDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYV 403

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIA 493
            Q KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K+IP +   PVS++ A+A
Sbjct: 404  QEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALA 463

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            D+ R RE    +  V RLL   Q++EGL R+ASTHAAG+VIGDRPL QLVP+Y+D RSD+
Sbjct: 464  DEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGDRPLDQLVPLYQDPRSDM 523

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD---------FLAQRGVKV-------- 596
            P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D          +A  G ++        
Sbjct: 524  PATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKAGGRHLHIAADGTEIYQPPEGHI 583

Query: 597  -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             D++ IP DD  TY L ++  T+ +FQ+ESSGM  AL+ M+P CIEDI+ALV+LYRPGP+
Sbjct: 584  DDIATIPLDDKATYKLYSSAKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPM 643

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            +NI  Y   KNG+ ++ S+HP ID +L+ETQG+I+YQEQVMQIAQ+++GYSL  AD+LRR
Sbjct: 644  ENIPTYCEVKNGQRELESVHPSIDYILEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKKI EEM K++ +F  GA  NG+ K  A  +F+LL KFA+YGFNKSHAAAYAV+SYQ
Sbjct: 704  AMGKKIAEEMAKERPKFEKGAMANGVDKKKAAEVFDLLEKFANYGFNKSHAAAYAVVSYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDNR 834
            TAW+K ++PVEF+A  M  ++   +K+  + ++ R+   +  +PP VN     FKV D  
Sbjct: 764  TAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKRLELPWVPPCVNRSDASFKVVDGA 823

Query: 835  IYYSLAAIKGVGTTTARHIMEA----SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            + Y+L A+K VG    R + E       DKPF +L D   RVD K++ +R LE LV +GA
Sbjct: 824  LVYALGALKNVGLEAMRLVTEGRKVEGVDKPFATLYDLARRVDLKRVGKRPLEMLVRSGA 883

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R ++ QSLD +  Y+  + + + +   ++F  E G    +  +       S+ 
Sbjct: 884  FDQLDSNRRRVFQSLDGLVSYSAAIHEQKASNQVSLFG-EAGDDLPEPRMLPCDDWQSAE 942

Query: 951  RFENEQRVLGFYFSGHPLDVYK-PILRK---------MGIKGYEESVATIRGNNIRLAAM 1000
            R   E + +GFY SGHPLD Y  P+ RK         + +    E V+T    N RLA +
Sbjct: 943  RLAEEFKAVGFYLSGHPLDDYMVPLRRKWARETGLPFLTLDELTEKVSTRGAMNARLAGV 1002

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V  +Q++K+ +G+R  +   S+    YE   F
Sbjct: 1003 VAGRQERKSARGNRFAFAQLSDTTGGYEVTLF 1034


>gi|119384499|ref|YP_915555.1| DNA polymerase III subunit alpha [Paracoccus denitrificans PD1222]
 gi|119374266|gb|ABL69859.1| DNA polymerase III, alpha subunit [Paracoccus denitrificans PD1222]
          Length = 1156

 Score =  966 bits (2498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1056 (47%), Positives = 680/1056 (64%), Gaps = 58/1056 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E SP F+HL+ HS +SLLEGA+ +  + D  A +  PA+A+TD+N LF+ALEFS KA  A
Sbjct: 3    ENSPRFIHLRTHSEHSLLEGAVPVKKLADLAAQNGMPAVALTDSNALFAALEFSVKAQDA 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+QPIIGCQ+         +  +   P      +VLL     G+  L+EL + +YL D  
Sbjct: 63   GVQPIIGCQV--------TLAAEATGP------VVLLAQNEAGWLNLMELSTCLYLRDD- 107

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
              ++            EGLI LTGG+ GP+ +         A          F  RLYV 
Sbjct: 108  -HALPHVTPEELAAHAEGLICLTGGAGGPLGQLVLQGRQAEARALAERLAAAFPTRLYVE 166

Query: 186  LQRHRGYDRY-------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            LQRH   +          E  ++ +AY  +LPLVATN+  F   E ++AHD L+ ++   
Sbjct: 167  LQRHHDAEGQPVPEETGSEGGMIDIAYALDLPLVATNDVYFPKPELFDAHDALICISERA 226

Query: 239  VVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q   R R+TP HY K+ +EM ++F+DLPEA+ NTVEIARRC+F ++ H PILPRF +
Sbjct: 227  YVDQTAPRRRLTPQHYFKSAAEMATLFADLPEAIRNTVEIARRCAFAVKKHKPILPRFAD 286

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E +        ELR +A  GL  RLA   I      ++Y +RL FEL +I +M F GYF
Sbjct: 287  DEVE--------ELRRQAWDGLRARLA--VIPHSATVEEYEERLRFELGIIEQMGFPGYF 336

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK++NIPVGPGRGSGAGS+ AYALTITD+DP+R+SLLFERFLNP+R+SMPD
Sbjct: 337  LIVADFIKWAKEHNIPVGPGRGSGAGSLVAYALTITDLDPIRYSLLFERFLNPERVSMPD 396

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RDVGR LQ+P+ QVDRL K
Sbjct: 397  FDIDFCMDRREEVIQYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQLPFGQVDRLSK 456

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+ +A+AD+ R REA   +  V+RLL+ + K+EGL R+ASTHAAG+VIGD
Sbjct: 457  MIPVEGVKPVSVTKALADEPRLREAAREE-VVNRLLDYAAKIEGLLRNASTHAAGVVIGD 515

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------- 589
            RPL +LVP+YRD  SD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D +       
Sbjct: 516  RPLHRLVPLYRDPASDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLINDGGRPL 575

Query: 590  -----------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                         +G +  ++ IP DD  +Y L  +  T+ +FQ+ESSGM  AL  M+P 
Sbjct: 576  HVAADGRQLYEPAKGAENQINAIPLDDKPSYDLFASARTVAVFQVESSGMMDALRRMKPT 635

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG   + SIHP ID +L ETQG+I+YQEQVMQI
Sbjct: 636  CIEDIVALVALYRPGPMENIPTYCEVKNGLRPLESIHPSIDDILAETQGIIVYQEQVMQI 695

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F+ G    GI    A  +F+LL KFA+
Sbjct: 696  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFVEGCKAQGIDTKKAGEVFDLLEKFAN 755

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M  ++   +K+  + ++A +  I+ +P
Sbjct: 756  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREADRMGIETVP 815

Query: 819  PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
            P VN     F V D +I Y+L A+KGVG      I++A A +PF  + DF  RVD +++ 
Sbjct: 816  PCVNRSEALFSVKDGKILYALGALKGVGVEAMNLIVQARAGRPFADMHDFARRVDMRRVG 875

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            +R LE L  AGA D    +R ++L+SLD +  ++  V++   +   ++F    G      
Sbjct: 876  KRPLEMLARAGAFDALEPNRARVLKSLDGLVAWSTAVQEAAASSQSSLFG--GGEDLPPP 933

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-R 996
                  V   + +   E   +GFY SGHPLD Y+P LR+ G++   E + A   G  + +
Sbjct: 934  RPVAAPVWMPAEKLAEEHAAVGFYLSGHPLDDYQPALRRKGVQTLAEVTQAAADGALVAQ 993

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            LA  V  +Q+KK+ +G+R  +V  S+P   YE   F
Sbjct: 994  LAGTVAHRQEKKSARGTRFAFVGLSDPTGLYEVTVF 1029


>gi|83592917|ref|YP_426669.1| DNA polymerase III subunit alpha [Rhodospirillum rubrum ATCC 11170]
 gi|83575831|gb|ABC22382.1| DNA polymerase III, alpha subunit [Rhodospirillum rubrum ATCC 11170]
          Length = 1170

 Score =  965 bits (2495), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1043 (47%), Positives = 687/1043 (65%), Gaps = 30/1043 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VH++ S+ EGA+ +  ++   A    PA+AITD+ NLF ALE S  AC  G+QP
Sbjct: 19   GFVHLRVHTALSMSEGAIQVKALVKLCAKMGMPAVAITDSGNLFGALELSVTACDMGVQP 78

Query: 70   IIGCQLDIDMQDNLKMTNQG-------KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
            IIGCQ+ +    N ++  +G       + P P   ++VLL   A GY  L+++VSR ++ 
Sbjct: 79   IIGCQIAVR---NEEVRERGFGAGRDLRAPDPD--AVVLLAKNASGYANLMKIVSRSFIE 133

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
              G ++ ++ L+ ++ +  +GLI+LTGG  GP+ R         A   L   K+ FGDR+
Sbjct: 134  GDGSEAPQVRLADIEAL-NDGLILLTGGVGGPLGRLLREGRRDEAAAILARHKEHFGDRV 192

Query: 183  YVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            YV +QRH   D  R E+ ++ LAY   + LVATN   +     +EAHDVL+ +   TV+ 
Sbjct: 193  YVEIQRHGMADEDRIEADLIDLAYAQNVALVATNEPYYPDRAMFEAHDVLICMQQKTVIG 252

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             + R R+TP+HY K  +EM ++F+DLPEA++NT+ IA+RC+ + +   PILP     +  
Sbjct: 253  DETRRRLTPEHYFKPANEMRALFADLPEAVDNTLVIAKRCAVMSEKRKPILPHSPAVK-- 310

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYH-------AQDYRQRLDFELNVIARMKFS 354
               + E   L   A  GL+ RL +    +G         A+ YR+RL +EL+VI +M F 
Sbjct: 311  --GRTEAEALCAMAEEGLDKRLEKHVYREGMSEAERIEIAKPYRERLAYELDVIIKMGFP 368

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIVADFIQWAK  +IPVGPGRGSGAGS  A+ALTITD+DPLRFSLLFERFLNP+R+S
Sbjct: 369  GYFLIVADFIQWAKDADIPVGPGRGSGAGSCVAWALTITDLDPLRFSLLFERFLNPERVS 428

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFDIDFCQDRR+EVIRYVQ +YG+ERVAQIITFG LQA+A LR VGR LQMP   VD+
Sbjct: 429  MPDFDIDFCQDRREEVIRYVQREYGYERVAQIITFGKLQARAVLRSVGRVLQMPLGYVDK 488

Query: 475  LCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            +CK++PN+PA PV+L +AI  + + R+ +  D  V RLL+I  KLEGLY HASTHAAG+V
Sbjct: 489  ICKMVPNNPAAPVTLKEAIEAEPQLRDLQKNDEMVARLLDIGMKLEGLYSHASTHAAGVV 548

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            IGDRPL  LV +YRD  SD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A+RG
Sbjct: 549  IGDRPLDNLVALYRDPHSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQHAVRHIAKRG 608

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            + VDL  +P DD  +Y +L    T G+FQLES+GMR  L  M+PD +EDI+A+V+LYRPG
Sbjct: 609  ITVDLLDLPLDDRRSYDMLGRGETSGVFQLESTGMRDVLRNMKPDTLEDIVAIVALYRPG 668

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+DNI  Y  RK G+E++V +H  ++P+LKET G++IYQEQVMQ AQ+++GYSL  AD+L
Sbjct: 669  PMDNIPSYIKRKKGEEEVVYLHDSLEPILKETYGILIYQEQVMQAAQIMAGYSLGGADLL 728

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKKIK EMD Q+  F+ GA K G S+  A  +F+ +AKFA YGFNKSHAAAY +++
Sbjct: 729  RRAMGKKIKAEMDTQRALFVEGAGKRGTSEAKASEVFDQIAKFAGYGFNKSHAAAYGLVA 788

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K +YPVEF+AA+MT +M N +K+  F  + R+ +I ++PP VN     F V D 
Sbjct: 789  YQTAYLKANYPVEFMAATMTYDMHNTDKLAVFKGELRRLDIPLLPPDVNRSFAVFGVEDG 848

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             + Y+L A+K VG      ++ E  A  PF  L DF  R+D K +N+R+LE+L+ AGALD
Sbjct: 849  AVRYALGAVKNVGAAAMDALVAEREARGPFKDLADFARRLDGKVINKRLLENLIKAGALD 908

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                 R +LL + D + ++AQ   ++R +   ++F     T    +     +    +   
Sbjct: 909  SLDGDRAKLLANADVLMRHAQAAAEDRASNQSSLFGGAGATSEPPMKFRACAAWTITETL 968

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN---IRLAAMVVSKQQKKT 1009
             +E+  +GFY S HPLD+Y   L ++ +   E     +RG     ++LA    +++++  
Sbjct: 969  AHERDAMGFYLSAHPLDIYGDSLERLDVVPIEMLPGHLRGGGSGAVKLAVTPGARKERIG 1028

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
            + GSR  +V  S+     E   F
Sbjct: 1029 KSGSRYAFVELSDATGSCETMVF 1051


>gi|159045497|ref|YP_001534291.1| DNA polymerase III subunit alpha [Dinoroseobacter shibae DFL 12]
 gi|157913257|gb|ABV94690.1| DNA polymerase III subunit alpha [Dinoroseobacter shibae DFL 12]
          Length = 1164

 Score =  965 bits (2494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1053 (47%), Positives = 686/1053 (65%), Gaps = 43/1053 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL++H+ YSLLEGA+ L  + D +AA + PAIAITDTNN+F+ALE S+    
Sbjct: 1    MTQPPRFIHLRLHTEYSLLEGAMRLKKLPDLVAAAEMPAIAITDTNNMFAALEASEALSK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPIIGCQ+D+   D      + + P P    +VLL  T  GY+ L+ L + +Y+ D+
Sbjct: 61   AGIQPIIGCQVDVAF-DPAAPGERPRAPAP----VVLLAQTEAGYENLMALNTCLYV-DK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q  +I +  L   G++ LI LTGG  GP+ R         A+  +    ++FGDRLYV
Sbjct: 115  GGQLPQITVEELAANGSD-LICLTGGPRGPLGRFLSAGQRPKAQALMARLAEIFGDRLYV 173

Query: 185  NLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
             L RH G     E++   + LAY   LPLVATN+  F     YEAHD L+ +A    V Q
Sbjct: 174  ELHRHPGDPLCAETEPGFLDLAYDMNLPLVATNDVYFPDPGMYEAHDALICIAEGAYVDQ 233

Query: 243  K-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            +  R R+T  HY K+++EM ++F+DLPEALENT+EIARRC+F      PILPRF E E +
Sbjct: 234  QAPRRRLTDQHYFKSQTEMATLFADLPEALENTIEIARRCAFKAFKRDPILPRFAEDEVE 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                    ELR ++  GL+ RLA   I      ++Y +RL+FEL++I  M F GYFLIVA
Sbjct: 294  --------ELRRQSREGLKARLA--VIPHAAPVEEYEKRLEFELDIIEGMGFPGYFLIVA 343

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK   IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDID
Sbjct: 344  DFIKWAKDRGIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERISMPDFDID 403

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRR+EVI YVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL K+IP 
Sbjct: 404  FCMDRREEVIHYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKMIPV 463

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   PVS++ A+ D+ R  E   A+  V+RLL+   ++EGL R+ASTHAAG+VIGDRPL 
Sbjct: 464  EGVKPVSIEKALKDEPRLAEEAKAEEVVERLLKYGMQVEGLLRNASTHAAGVVIGDRPLD 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----------- 589
            +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT+++ ++  +           
Sbjct: 524  KLVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIENAVKLIRATGRDLHVAA 583

Query: 590  -------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
                      G + D++ IP DD  +Y L  +  T+ +FQ+ES+GM  AL  M+P CIED
Sbjct: 584  DGTELYSPAPGTENDINAIPLDDEASYKLYASAKTVAVFQVESTGMMDALRRMKPTCIED 643

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            IIALV+LYRPGP++NI  Y   KNG  +   +HP +D +L ETQG+I+YQEQVMQIAQ +
Sbjct: 644  IIALVALYRPGPMENIPKYCEVKNGLSERDLLHPTVDHILDETQGIIVYQEQVMQIAQEM 703

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +GYSL  AD+LRRAMGKKI+E MD ++ +F++GA++NG+ K  A+ ++ LL KFA+YGFN
Sbjct: 704  AGYSLGGADMLRRAMGKKIQEAMDAERPKFLAGAAENGVDKDKALEVWHLLDKFANYGFN 763

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821
            KSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R+   ++I+PP V
Sbjct: 764  KSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYAEEVRRGLGLEIVPPCV 823

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
            N     F V + ++ Y L A+K VG      ++    DKPF +L D   RVD K++ +R 
Sbjct: 824  NRSRASFSVAEGKLVYGLGALKNVGADAMELVVTGRGDKPFATLFDLARRVDLKRVGKRP 883

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE L  AGA D    +R ++ QSLD +  Y+  + + R +   ++F  E G    +  + 
Sbjct: 884  LEMLARAGAFDQLDPNRRRVFQSLDGLVAYSAAIHEQRASAQVSLFG-EAGEDLPEPRIL 942

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAA 999
                   + R   E + +GFY SGHPLD Y   L++ G+   E     +       ++A 
Sbjct: 943  PCDDWLPAERLAEEHKAIGFYLSGHPLDDYMGALKRKGVVTLEALARKVETGAAVAKIAG 1002

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +  +Q++K+ +G+R  +V  S+P   YE   F
Sbjct: 1003 TIAGRQERKSARGNRFAFVQASDPTGLYEVTVF 1035


>gi|82946509|dbj|BAE51373.1| DNA polymerase III, alpha subunit [Magnetospirillum magneticum AMB-1]
          Length = 1118

 Score =  964 bits (2492), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1010 (48%), Positives = 675/1010 (66%), Gaps = 31/1010 (3%)

Query: 42   PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
            PA+ ITDT NLF ALEFS     AGIQPI+G Q+ I  +D    +  G+ P P   ++VL
Sbjct: 2    PAVGITDTANLFGALEFSTSCSDAGIQPIVGAQIAIRREDG-GPSKDGRKPEPD--TLVL 58

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
            L     GY  L++LVS+ +L     ++ ++ L  L E  ++GLI+LTGG +GP+ R    
Sbjct: 59   LCQNEAGYLNLLKLVSKAFLETDAGETPQVTLHDL-ETRSDGLIVLTGGPAGPVGRLLAD 117

Query: 162  NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFL 220
              ++ AE  L    + F  R YV L RH      R E  +V LAY H+LPLVATN + F 
Sbjct: 118  GQTEKAEIVLARLARAFAGRCYVELMRHNLEVEDRIEPLLVSLAYKHDLPLVATNEAFFA 177

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
                YEAHD L+ +A    +SQ +R R+TP+HY K+  EM ++F+DLPEA +NT+ IARR
Sbjct: 178  DRGMYEAHDALVCIAEGAYISQDERRRLTPEHYFKSPEEMRALFADLPEACDNTLVIARR 237

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG-------YH 333
            C+F +    PILP +     D + + E   LR K   GLE RL +    +G       + 
Sbjct: 238  CAFGVAKRKPILPPY---RMDGLTEAEV--LRKKTWEGLEARLEKHVFKEGMTDDEKEHA 292

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
            A+ YR+R++FELNVI  M F GYFLIV+DFIQW+K   IPVGPGRGSGAGS  A+ALTIT
Sbjct: 293  AKPYRERIEFELNVIEEMGFPGYFLIVSDFIQWSKAQEIPVGPGRGSGAGSAVAWALTIT 352

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            D+DPLR+ LLFERFLNP+R+SMPDFDIDFCQDRR+E IRYVQ KYG+ +VAQIITFG LQ
Sbjct: 353  DLDPLRWGLLFERFLNPERVSMPDFDIDFCQDRREETIRYVQGKYGYSQVAQIITFGKLQ 412

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLL 512
            A+A LRDVGR LQMPY QVDR+CKL+PN+PA+P++L QA+  +   +E +  D +V  L+
Sbjct: 413  ARAVLRDVGRVLQMPYGQVDRICKLVPNNPANPMTLEQALESEPLLKEQKERDEAVSHLI 472

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            +++ KLEGLYRHASTHAAG+VIGDRPL +LVP+YRD RSD+PVTQFNMKW+E AGL+KFD
Sbjct: 473  DLAMKLEGLYRHASTHAAGVVIGDRPLDELVPLYRDPRSDMPVTQFNMKWVESAGLVKFD 532

Query: 573  FLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  ++  + + +G+ +DLS IP DD ++Y LL+     G+FQLESSGMR  
Sbjct: 533  FLGLKTLTVMVTAVKHVKKTKGIDIDLSAIPLDDAKSYELLSRGDAAGVFQLESSGMRDV 592

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            L  M P+ +ED+IA+V+LYRPGP+D I  Y   K+GKE+   +HPL++P+LKET G+++Y
Sbjct: 593  LRKMGPNRLEDLIAVVALYRPGPMDQIPRYIACKHGKEEPDYMHPLLEPILKETFGIMVY 652

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQIAQ+LSGYSL  AD+LRRAMGKK +EEMD+Q+ +F+ GA+   +    A  IF+
Sbjct: 653  QEQVMQIAQVLSGYSLGGADLLRRAMGKKDREEMDRQRAKFVEGATARAVDGGQASMIFD 712

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +AKFA+YGFNKSHAAAYA+I+YQTAW+K +YP EF+AA+MT EM N +K+  F Q+  +
Sbjct: 713  KVAKFAEYGFNKSHAAAYALIAYQTAWLKANYPAEFMAATMTYEMSNTDKLNSFRQELDR 772

Query: 812  FNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSL 865
              I+++PP +N     F V     G + + Y+LAA+K VG    + ++ E      F  +
Sbjct: 773  LGIKLLPPDINASQPTFSVEVLPDGGSAVRYALAALKNVGEAAMKSLVDERERGGRFKDV 832

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DF +R+DSK LNRR LE++V AG  D    +R +L ++ D + +YA    ++R +   +
Sbjct: 833  GDFAARMDSKVLNRRQLENMVKAGVFDSLDKNRGRLFKNADTLCRYAASAAEDRDSSQMS 892

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            +     G+ +  + LE     +   +   E   +GFY S HPLD Y   ++++ +    E
Sbjct: 893  LLG---GSNAPTLKLESGPDWSPHEKLNQEFEAVGFYLSAHPLDAYAKSMKRLNVLKIAE 949

Query: 986  SVATIRGNN---IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++      +RLA  ++SKQ++ + KGSR  ++ FS+ +  +E   F
Sbjct: 950  LPRHLQSGGKGRVRLAGSLLSKQERVSAKGSRYAFLQFSDASGMFEVTCF 999


>gi|255262260|ref|ZP_05341602.1| DNA polymerase III subunit alpha [Thalassiobium sp. R2A62]
 gi|255104595|gb|EET47269.1| DNA polymerase III subunit alpha [Thalassiobium sp. R2A62]
          Length = 1169

 Score =  964 bits (2491), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1055 (47%), Positives = 686/1055 (65%), Gaps = 51/1055 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL++H+ YSLLEGA+ +  +         PA+A+TDTNN+F ALEFS+ A  +GIQPI
Sbjct: 6    FIHLRLHTEYSLLEGAIPVKKLPQMCINADMPAVAVTDTNNMFCALEFSEGAAKSGIQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGCQ+D+          QG+   P  P +VLL     GY  L++L S  Y+ D G    +
Sbjct: 66   IGCQIDL----TYDQAEQGQREKPPAP-LVLLAQNETGYANLMKLNSCEYI-DAGGALPQ 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L  L++  ++GLI L+GG +GP+ +         A+  +      + +RLYV LQRH 
Sbjct: 120  VSLEELEQY-SDGLICLSGGPNGPVGQFLQQGQGPKAQALMTRLAATYPNRLYVELQRHP 178

Query: 191  G------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            G       ++  E+ ++ +AY   LPLVATN+  F   E YEAHD L+ +A    V Q++
Sbjct: 179  GDGGLPDNEQRTETALIDMAYAMGLPLVATNDVYFPKPEIYEAHDALICIAEGAYVDQQE 238

Query: 245  -RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R R+TP HY K+  EM+++F+DLPEA+ENT+EIARRC+F      PILP+F + E +  
Sbjct: 239  PRRRLTPQHYFKSPQEMITLFADLPEAVENTIEIARRCAFKAYKRDPILPKFADDEVE-- 296

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                  ELR +A AGL+ RLA   I      ++Y +RLDFEL++I  M F GYFLIVADF
Sbjct: 297  ------ELRRQAHAGLKDRLA--VIPHAVTVEEYEKRLDFELDIIEGMGFPGYFLIVADF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+W+K N IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDIDFC
Sbjct: 349  IKWSKDNAIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVD L K+IP + 
Sbjct: 409  MDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDSLSKMIPVEG 468

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              PVS+ +A+AD+ R REA   +  VDRLL   Q++EGL R+ASTHAAG+VIGDRPL  L
Sbjct: 469  VKPVSIVKALADEPRLREAAQNEEVVDRLLTYGQQVEGLLRNASTHAAGVVIGDRPLDAL 528

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----------- 591
            VP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + +           
Sbjct: 529  VPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLILKSNRSIHVAADG 588

Query: 592  -------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
                    G + D++ IP DD  +Y L  +  T+ +FQ+ES+GM  AL  M+PDCIEDII
Sbjct: 589  AELYTPANGTENDINAIPLDDDASYKLYASAKTVAVFQVESTGMMDALRRMKPDCIEDII 648

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ALV+LYRPGP++NI  +   KNG      +HP ID +L ETQG+I+YQEQVMQIAQ ++ 
Sbjct: 649  ALVALYRPGPMENIPKFCEVKNGLSDRDLLHPTIDHILDETQGIIVYQEQVMQIAQEMAN 708

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YSL  AD+LRRAMGKKI+E MD +K +F+SG+ +NG+ +  A  +++LL KFA+YGFNKS
Sbjct: 709  YSLGGADLLRRAMGKKIQEAMDAEKPKFLSGSKENGVDEKKAKEVWDLLDKFANYGFNKS 768

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNT 823
            HAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++   +   PP VN 
Sbjct: 769  HAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLGLPYSPPCVNR 828

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHI----MEASADKPFDSLEDFCSRVDSKKLNR 879
                F V D  + Y+L A+K VG    R +    M   ADKPF ++ D   RVD K++ +
Sbjct: 829  SQATFDVVDGTLVYALGALKNVGVEAMRMMTDGRMVEGADKPFANVFDMARRVDLKRVGK 888

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R LE L  AGA D    +R ++  SLD +  Y+  +   R +   ++F  E G    +  
Sbjct: 889  RPLEMLARAGAFDQLDPNRRRIFDSLDALTNYSAAIHDQRGSNQVSLFG-EAGDDLPEPR 947

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNN-IRL 997
            L   +    + R   E + +GFY SGHPLD Y P L++ G    ++ +    RG   +++
Sbjct: 948  LSPVTDWLPAERLAEEFKAIGFYLSGHPLDDYMPALKRKGALTLDDVMLKAERGACVVKM 1007

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A  V  +Q++K+ +G+R  +V  S+P  ++E   F
Sbjct: 1008 AGTVSGRQERKSARGNRFAFVQLSDPTGQFEVTMF 1042


>gi|85704828|ref|ZP_01035929.1| DNA polymerase III subunit alpha [Roseovarius sp. 217]
 gi|85670646|gb|EAQ25506.1| DNA polymerase III subunit alpha [Roseovarius sp. 217]
          Length = 1166

 Score =  962 bits (2488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1057 (47%), Positives = 692/1057 (65%), Gaps = 47/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP F+HL+VH+ YSLLEGA+ L  +    AA   PA+A+TDTNN+F+ALEFS  A  
Sbjct: 1    MSTSPRFIHLRVHTEYSLLEGAIRLKKLPSLCAAAGMPAVAVTDTNNMFAALEFSVSAQG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+D    L    + K P P    +VLL     GY+ L++L S +YL   
Sbjct: 61   AGVQPIMGCQIDLDYI-ALAPGERTKPPAP----LVLLGQNERGYENLMKLNSCLYLRGD 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     + LS L+    EG+I L+GG  GP+ R         AE  +    + FGDRLYV
Sbjct: 116  GSLP-HVTLSELKR-HAEGVICLSGGPDGPVGRLLQAGQRPGAEALMQRLMRAFGDRLYV 173

Query: 185  NLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH         +R  E   +++AY   LPLVATN+  F   + YEAHD ++ VA   
Sbjct: 174  ELQRHPSDGGAPEAERLTERGHIEMAYAMGLPLVATNDVYFPKSDMYEAHDAMLCVADGA 233

Query: 239  VVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q   R R+TP HY K++ EM ++F+DLPEALEN+VEIA RC+F      PILP+F +
Sbjct: 234  YVDQSAPRRRLTPQHYFKSQDEMAALFADLPEALENSVEIATRCAFGCYKRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E +        ELR +A AGL+ RLA   I      ++Y +RL+FEL +I  M F GYF
Sbjct: 294  DEVE--------ELRRQARAGLQSRLA--VIPHAAPVEEYEERLEFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK  +IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKDQDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG +RV QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIQYVQEKYGRDRVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++ A+AD+ R RE    +  VDRLL  +Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALADEPRLREEAKNEEVVDRLLTYAQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----- 591
            RPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + +     
Sbjct: 524  RPLDELVPVYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDMIRKTGRPL 583

Query: 592  -------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                          G + D+  IP DD ++Y L  +  T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  NVAADGTELYQPPEGFEYDIGAIPLDDEKSYRLYASAKTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG +++ SIHP ID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPTYCEVKNGLKELESIHPSIDYILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  GA +NG++K  A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMENGVNKRKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++   +   
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLGLDWA 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
             P VN     F V D  ++Y+L A+K VG    + I    +D+ F +L D   RVD K++
Sbjct: 824  GPCVNHSEATFDVRDGVLHYALGALKNVGVEAMKLITAGRSDRSFATLYDVAQRVDLKRV 883

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE L  AGA D    +R ++ +S++ +  Y+  + + + +   ++F  E G    +
Sbjct: 884  GKRPLEMLARAGAFDALDRNRRRVFESIEALMSYSAAIHEQKNSNQVSLFG-EAGDDLPE 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNN-I 995
              L        + R   E + +GFY SGHPLD Y  +LR+  +K  +E  A   RG   +
Sbjct: 943  PRLAPVDDWLPAERLTEEFKAVGFYLSGHPLDDYMTVLRRQDVKTLDEVTAQAERGPALV 1002

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++A +V  +Q++K+ +G+R  +   S+    +E   F
Sbjct: 1003 KMAGVVAGRQERKSARGNRFAFAQLSDTTGSFEVTIF 1039


>gi|46202448|ref|ZP_00208519.1| COG0587: DNA polymerase III, alpha subunit [Magnetospirillum
            magnetotacticum MS-1]
          Length = 1115

 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1008 (48%), Positives = 678/1008 (67%), Gaps = 31/1008 (3%)

Query: 44   IAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
            + I+DT NLF ALEFS     AGIQPI+G Q+ I  +D    +  G+ P P   ++VLL 
Sbjct: 1    MGISDTGNLFGALEFSTSCSDAGIQPIVGAQIAIRREDG-GPSKDGRKPEPD--TLVLLC 57

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
                GY  L++LVS+ +L     ++ ++ L  L E  ++GLI+LTGG +GP+ R      
Sbjct: 58   QNEAGYLNLLKLVSKAFLETDAGETPQVTLHDL-ETRSDGLIILTGGPAGPVGRLLADGQ 116

Query: 164  SQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSE 222
            ++ AE  L    + F  R YV + RH+     R E  +V LAY H+LPLVATN + F   
Sbjct: 117  AEKAEIVLARLARAFAGRCYVEIMRHKLEVEDRIEPMLVSLAYKHDLPLVATNEAFFADR 176

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
              YEAHD L+ +A    +SQ +R R+TP+HY K+  EM ++F+DLPEA +NT+ IARRC+
Sbjct: 177  GMYEAHDALVCIAEGAYISQDERRRLTPEHYFKSPQEMRALFADLPEACDNTLVIARRCA 236

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG-------YHAQ 335
            F +    PILP +     D + + E   LR K + GL+ RLA+     G       + A+
Sbjct: 237  FGVAKRKPILPPY---RMDGLTEAEV--LRKKTLEGLDDRLAKHVFKDGMTDDEKDHAAK 291

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
             YR+R++FEL VI +M F GYFLIV+DFIQW+K + IPVGPGRGSGAGS  A+ALTITD+
Sbjct: 292  PYRERIEFELGVIEQMGFPGYFLIVSDFIQWSKAHEIPVGPGRGSGAGSAVAWALTITDL 351

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DPLR+ LLFERFLNP+R+SMPDFDIDFCQDRR+E IRYVQ KYG+ +VAQIITFG LQA+
Sbjct: 352  DPLRWGLLFERFLNPERVSMPDFDIDFCQDRREETIRYVQAKYGYSQVAQIITFGKLQAR 411

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEI 514
            A LRDVGR LQMPY QVDR+CKL+PN+PA+P++L QA+ ++   +E +  D +V  L+++
Sbjct: 412  AVLRDVGRVLQMPYGQVDRICKLVPNNPANPMTLEQALENEPLLKEQKERDETVSHLIDL 471

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            + KLEGLYRHASTHAAG+VIGDRPL +LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFL
Sbjct: 472  AMKLEGLYRHASTHAAGVVIGDRPLDELVPLYRDPRSDMPVTQFNMKWVESAGLVKFDFL 531

Query: 575  GLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GLKTLT++  ++  + + +G+ +DLS IP DD ++Y LL+     G+FQLESSGMR  L 
Sbjct: 532  GLKTLTVMVTAVKHVKKSKGIDIDLSAIPLDDAKSYELLSRGDAAGVFQLESSGMRDVLR 591

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
             M P+ +ED+IA+V+LYRPGP+D I  Y   K+GKE+   +HPL++P+LKET G+++YQE
Sbjct: 592  KMGPNRLEDLIAVVALYRPGPMDQIPRYIACKHGKEEPDYMHPLLEPILKETFGIMVYQE 651

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQIAQ+LSGYSL  AD+LRRAMGKK +EEMD+Q+ +F+ GA+   +    A  IF+ +
Sbjct: 652  QVMQIAQVLSGYSLGGADLLRRAMGKKDREEMDRQRAKFVEGATARAVDGGQASMIFDKV 711

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
            AKFA+YGFNKSHAAAYA+I+YQTAW+K +YP EF+AA+MT EM N +K+  F Q+  +  
Sbjct: 712  AKFAEYGFNKSHAAAYALIAYQTAWLKANYPAEFMAATMTYEMSNTDKLNSFRQELDRLG 771

Query: 814  IQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLED 867
            I+++PP +N+    F V     G + + Y+LAA+K VG    + ++E       F  + D
Sbjct: 772  IKLLPPDINSSQPTFSVELLPDGGSAVRYALAALKNVGEAAMKSLVEERDRGGRFKDMGD 831

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F +R+DSK LNRR LE++V AG  D    +R +L ++ D + +YA    ++R +   ++ 
Sbjct: 832  FAARMDSKVLNRRQLENMVKAGVFDSIDKNRGRLFKNADTLCRYAAQAAEDRQSSQMSLL 891

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                G+ +  + LE     +   +   E   +GFY S HPLD Y   ++++ +    E  
Sbjct: 892  G---GSNAPTLKLESGPDWSPHEKLNQEFEAVGFYLSAHPLDAYAKSMKRLNVLKIAELP 948

Query: 988  ATIRGNN---IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++      +RLA  ++SKQ++ + KGSR  ++ FS+ +  +E   F
Sbjct: 949  RHLQSGGKGRVRLAGSLLSKQERVSAKGSRYAFLQFSDASGMFEVTCF 996


>gi|88862980|gb|ABD53857.1| DNA polymerase III, alpha subunit [Jannaschia sp. CCS1]
          Length = 1155

 Score =  960 bits (2482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1043 (48%), Positives = 675/1043 (64%), Gaps = 69/1043 (6%)

Query: 36   IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
            +A    PA+A+TDTNN+F ALEFS+ A  AG+QPIIGCQ+D++ +    +   G+ P   
Sbjct: 10   VADAGMPAVAVTDTNNMFCALEFSEMAKKAGVQPIIGCQIDLEYE----VIAPGEKPRAP 65

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
              +IVLL     GY+ L++L S +YL   G  S  + LS L E   EGLI L+GG  GP+
Sbjct: 66   A-AIVLLAQNRAGYENLMKLNSALYLRGDGT-SPHVTLSELAE-HAEGLICLSGGPDGPV 122

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYRESQVVQLAYTHEL 209
             R         AE  L T   ++ DRLYV LQRH G       ++  E   V+LAY   L
Sbjct: 123  GRHLRAAQMPKAESLLKTLAAIYPDRLYVELQRHPGEGGLPEAEKLTERGHVELAYALGL 182

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLP 268
            PLVATN+  F   E YEAHD ++ VA    V Q + R R+TP HY K+  EM ++F+DLP
Sbjct: 183  PLVATNDVYFPKSEIYEAHDAMLCVAQGAYVDQSEPRRRLTPQHYFKSADEMAALFADLP 242

Query: 269  EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
            EALENT+EIA+RC+F  ++H PILP+F + E          ELR  A  GL+ RL    I
Sbjct: 243  EALENTIEIAQRCAFRAEMHDPILPKFADDEV--------AELRRMANEGLKERLR--VI 292

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                  +DY+ RLDFEL +I  M F GYFLIVADFIQW+K   IPVGPGRGSGAGS+ AY
Sbjct: 293  PHAASVEDYQARLDFELEIIEGMGFPGYFLIVADFIQWSKDQEIPVGPGRGSGAGSLVAY 352

Query: 389  ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
            ALTITD+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVIRYVQ KYG +RV QIIT
Sbjct: 353  ALTITDLDPLRYSLLFERFLNPERISMPDFDIDFCMDRREEVIRYVQEKYGRDRVGQIIT 412

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRF--------- 498
            FG+L +KAA+RDVGR LQMP+ QVDRL K+IP +   PVS+ QAI D+ RF         
Sbjct: 413  FGALLSKAAVRDVGRVLQMPFGQVDRLSKMIPVEGVKPVSIAQAIKDEPRFIEEMRESEQ 472

Query: 499  --REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
              R+ R+ +P+  RL++ ++K+EGL R+ASTHAAG+VIGDRPL +LVP+YRD RSD+P T
Sbjct: 473  DKRDGRV-NPT-RRLMDYAEKIEGLLRNASTHAAGVVIGDRPLDELVPLYRDPRSDMPAT 530

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------------------AQRGVKVDL 598
            QFNMKW+E AGL+KFDFLGLKTLT++Q ++D +                     G +  +
Sbjct: 531  QFNMKWVEPAGLVKFDFLGLKTLTVVQNAIDLIHTSGRQLHEGPDGTTLYEPPEGTENQI 590

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            +LIP DD  +Y L  +  T+ +FQ+ESSGM  AL  M+PDCIEDIIALV+LYRPGP++NI
Sbjct: 591  NLIPLDDKASYDLYASAKTVAVFQVESSGMMDALRRMKPDCIEDIIALVALYRPGPMENI 650

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   KNG  +   +HP +D +L ETQG+I+YQEQVMQIAQ ++GYSL  AD+LRRAMG
Sbjct: 651  PKFCEVKNGLSERERLHPTVDHLLDETQGIIVYQEQVMQIAQEMAGYSLGGADMLRRAMG 710

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KKI+E MD ++ +F++GA +NG+ +  A+  + LL KFA+YGFNKSHAAAYAV+SYQTAW
Sbjct: 711  KKIQEAMDAERPKFLAGAKENGVDEAKALETWALLDKFANYGFNKSHAAAYAVVSYQTAW 770

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K ++PVEF+AA M  ++   +K+  + Q+  +  I+ + P VN     F V D ++ Y+
Sbjct: 771  LKANHPVEFMAAVMNCDIHLTDKLAVYKQEVDRMGIETLAPCVNRSAATFTVEDGKVLYA 830

Query: 839  LAAIKGVGTTTARHIMEA----SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            L A+K VG    + I+E        KP+ +L D   RVD K++ +R LE LV AGA D  
Sbjct: 831  LGALKNVGVEAMKMIVEGRQTDQGVKPYATLFDLARRVDLKRVGKRSLEMLVRAGAFDEL 890

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV---R 951
              +R  +L SLD +  Y+  V    ++   ++F    G   D +   + S     +   R
Sbjct: 891  DRNRRHVLDSLDGLTAYSAAVHDQASSNQVSLF----GDAGDDLPEPRLSSAPDWLPNER 946

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKT 1009
               E + +GFYFSGHPLD Y+P L++ G+    E  A ++      ++A  V  KQ++K+
Sbjct: 947  LAAEHQAVGFYFSGHPLDDYQPALKRRGVMTLAEVEARVQQGPFVAKMAGAVSVKQERKS 1006

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
            ++G+R  +V+ S+P   YE   F
Sbjct: 1007 QRGNRFAFVSLSDPTGLYEITIF 1029


>gi|254449414|ref|ZP_05062851.1| DNA polymerase III, alpha subunit [Octadecabacter antarcticus 238]
 gi|198263820|gb|EDY88090.1| DNA polymerase III, alpha subunit [Octadecabacter antarcticus 238]
          Length = 1168

 Score =  960 bits (2482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1060 (47%), Positives = 684/1060 (64%), Gaps = 57/1060 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+ H+ YSLLEGA+ +  I         PA+A+TDTNNLF ALEFS+ A  AG+Q
Sbjct: 4    PRFIHLRTHTEYSLLEGAVPVKKICGLAEKFGMPAVAVTDTNNLFCALEFSEYAAKAGVQ 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGCQ+D+     L++   G+ P    P +V L     GY  L++L S  YL D G Q 
Sbjct: 64   PIIGCQVDL----GLRVDEPGRRPERPAP-LVFLAQNEAGYMNLMKLNSCAYL-DAGGQL 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++ +  L +   EGLI L+GG  GPI R         AE  +     +F DRLYV LQR
Sbjct: 118  PQVTVDDLAKY-NEGLICLSGGPDGPIARLLRAGQRPAAEALMAQLAAIFSDRLYVELQR 176

Query: 189  HR------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            H         ++  E   V++AY  +LPLVATN+  F     YEAHD L+ +A    V Q
Sbjct: 177  HPVDGGLPEAEQLSEQGHVEMAYAMDLPLVATNDVYFPKTSIYEAHDALICIADGAYVDQ 236

Query: 243  KD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             + R R+TP HY K++ EMV++F+DLPEA+ NTVEIA+RC+F +    PILP+F + E +
Sbjct: 237  NEPRRRLTPQHYFKSQQEMVTLFADLPEAIANTVEIAKRCAFKVYTRDPILPKFADNEIE 296

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                    EL+ +A AGL+ RL    I      +DY +RLDFEL +I  M F GYFLIVA
Sbjct: 297  --------ELKLQARAGLKNRLK--VIPHAVSVEDYEKRLDFELGIIEGMGFPGYFLIVA 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++AK N+IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDID
Sbjct: 347  DFIKFAKDNDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDID 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQ+PY QVD+L K+IP 
Sbjct: 407  FCMDRREEVIRYVQQKYGRDKVGQIITFGALLSKAAIRDVGRVLQLPYGQVDKLSKMIPV 466

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   PVS+ +A+AD+ R RE    +  VDRLL   Q+LEGL R+ASTHAAG+VIGDR L 
Sbjct: 467  EGVKPVSIVKALADEPRLREMAKNEEVVDRLLTYGQQLEGLLRNASTHAAGVVIGDRSLD 526

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV---- 596
            +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + + G  +    
Sbjct: 527  ELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKSGRDLHKSP 586

Query: 597  --------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
                          D++ IP DD  +Y L     T+ +FQ+ESSGM  AL  M+PDCIED
Sbjct: 587  TGVELYVPAEGTLNDINAIPLDDEASYKLYAAAKTVAVFQVESSGMMDALRRMKPDCIED 646

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            IIALV+LYRPGP++NI  +   KNG      +HP ID +L ETQG+I+YQEQVMQIAQ +
Sbjct: 647  IIALVALYRPGPMENIPKFCEVKNGISDRDMLHPSIDHILDETQGIIVYQEQVMQIAQEM 706

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +GYSL  AD+LRRAMGKK++E MD +K +F++G+++NG++K  A  +++LL KFA+YGFN
Sbjct: 707  AGYSLGGADLLRRAMGKKLQEAMDVEKPKFLAGSAENGVNKKKAQEVWDLLDKFANYGFN 766

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821
            KSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++   +   PP V
Sbjct: 767  KSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLGLPWSPPCV 826

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME---ASADKPFDSLEDFCSRVDSKKLN 878
            NT    F V D  + Y L A+K VG      I++   A   KPF +L D   RVD K++ 
Sbjct: 827  NTSLATFDVQDGTLVYGLGALKNVGVDAMGLIVDARLAEGAKPFSTLFDLARRVDIKRVG 886

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            +R LE L  AGA D    +R ++  SLD +  Y+  +   + +   ++F    G   D +
Sbjct: 887  KRPLEMLARAGAFDVLDPNRRKVFASLDALVGYSSAIHDQKNSNQVSLF----GEAGDDL 942

Query: 939  TLEKFS-VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNN 994
               + S VE+   + R   E + +GFY SGHPLD Y   L++   +   +E  A      
Sbjct: 943  PEPRLSAVEDWLPAERLSEEFKAVGFYLSGHPLDDYMAALKRTEKVLTLDEVTAKAASGA 1002

Query: 995  I--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  ++A  V  +Q++K+ +G+R  +V  S+P  +YE   F
Sbjct: 1003 LVAKMAGTVAGRQERKSARGNRFAFVQLSDPTGQYEVTMF 1042


>gi|163732864|ref|ZP_02140309.1| DNA polymerase III, alpha subunit [Roseobacter litoralis Och 149]
 gi|161394224|gb|EDQ18548.1| DNA polymerase III, alpha subunit [Roseobacter litoralis Och 149]
          Length = 1138

 Score =  955 bits (2469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1028 (47%), Positives = 665/1028 (64%), Gaps = 55/1028 (5%)

Query: 42   PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
            PA+A+TD NN+F+ALEFS     AG+QPI+GCQ+D+      +   + + P P    +VL
Sbjct: 2    PALALTDKNNMFAALEFSVAMSGAGVQPILGCQVDVAYV-TAQPGEKERAPAP----VVL 56

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
            L     GY+ L+ L S +Y+ D+G    ++ LS L EI  +G+I LTGG  GP+ +    
Sbjct: 57   LAQNETGYENLMRLNSCLYI-DKGGALPQVTLSEL-EINADGIICLTGGPDGPVGQLLQL 114

Query: 162  NSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYRESQVVQLAYTHELPLVATN 215
                 A+  +   K  F DRLYV LQRH G       +R  E   V++AY  +LPLVATN
Sbjct: 115  GQMPAAQALMDRLKAAFQDRLYVELQRHPGESGQPEKERLTERGFVEMAYAMDLPLVATN 174

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
            +  F   + YEAHD L+ +A    V Q+D R R+T  HY K++SEM+++F+DLPEA+ENT
Sbjct: 175  DVYFPKSDMYEAHDALICIAEGAYVDQQDDRRRLTNQHYFKSQSEMIALFADLPEAIENT 234

Query: 275  VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
            VEIA+RC+F      PILP+F + E +        ELR +A AGL+ RL    I      
Sbjct: 235  VEIAKRCAFQAYRRDPILPKFADDEVE--------ELRKQAHAGLKARLE--VIPHATSV 284

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
            +DY +RLDFEL +I  M F GYFLIVADFI+WAK+  IPVGPGRGSGAGS+ AYALT+TD
Sbjct: 285  EDYTKRLDFELGIIEGMGFPGYFLIVADFIKWAKEQGIPVGPGRGSGAGSLVAYALTVTD 344

Query: 395  IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
            +DPLR++LLFERFLNP+R+SMPDFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +
Sbjct: 345  LDPLRYNLLFERFLNPERVSMPDFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLS 404

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLE 513
            KAA+RD+GR LQMPY QVDRL K+IP +   PVS++ A+AD+ R RE    +  V RLL 
Sbjct: 405  KAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALADEPRLREEAKNEEVVARLLN 464

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
              Q++EGL R+ASTHAAG+VIGDRPL  LVP+Y+D RS++P TQFNMKW+E+AGL+KFDF
Sbjct: 465  YGQQVEGLLRNASTHAAGVVIGDRPLDALVPLYQDPRSEMPATQFNMKWVEQAGLVKFDF 524

Query: 574  LGLKTLTLLQKSLD------------------FLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            LGLKTLT++Q +++                  +    G + D++ IP DD  +Y L  + 
Sbjct: 525  LGLKTLTVIQNAVEQIMASGRPLHIAADGTELYAPAAGTENDINAIPLDDERSYKLYASA 584

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
             T+ +FQ+ESSGM  AL+ M+P CIEDI+ALV+LYRPGP++NI  Y   KNG   + SIH
Sbjct: 585  KTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPMENIPTYCEVKNGLRALESIH 644

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            PLID +L+ETQG+I+YQEQVMQIAQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  G
Sbjct: 645  PLIDDILEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKG 704

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A  NG+ K  A  +F+LL KFA+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  +
Sbjct: 705  AVANGVDKDKAREVFDLLEKFANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCD 764

Query: 796  MDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
            +   +K+  + ++ R+   +  +PP VN     FKV +  + Y+L A+K VG    + I 
Sbjct: 765  IHLTDKLAIYFEEVRKRLELPWVPPCVNRSAATFKVEEGALIYALGALKNVGVEAMKLIT 824

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
            E   DKPF +L D   RVD K++ +R LE L  +GA D    +R ++  +LD +  Y+  
Sbjct: 825  EGRGDKPFATLFDLARRVDLKRVGKRPLEMLARSGAFDALDANRRRVFGALDALVNYSAA 884

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
            + + + +   ++F  E G    +  L        + R   E + +GFY SGHPLD Y   
Sbjct: 885  IHEQKASNQVSLFG-EAGDDLPEPRLHPVDDWQPAERLSEEFKAVGFYLSGHPLDDYMGQ 943

Query: 975  LRK----------MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            L++          M +    E V      N RLA +V  +Q++K+ +G+R  +   S+P 
Sbjct: 944  LKRKWGNDRGVPFMTLDELTEKVTERGAMNARLAGIVAGRQERKSARGNRFAFAQMSDPT 1003

Query: 1025 KEYEANFF 1032
              YE   F
Sbjct: 1004 GAYEVTLF 1011


>gi|254436926|ref|ZP_05050420.1| DNA polymerase III, alpha subunit subfamily, putative [Octadecabacter
            antarcticus 307]
 gi|198252372|gb|EDY76686.1| DNA polymerase III, alpha subunit subfamily, putative [Octadecabacter
            antarcticus 307]
          Length = 1172

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1060 (47%), Positives = 678/1060 (63%), Gaps = 53/1060 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+ H+ YSLLEGA+ +  I         PA+A+TDTNNLF ALEFS+ A  AG+Q
Sbjct: 4    PRFIHLRTHTEYSLLEGAVPVKKICALAEKFDMPAVAVTDTNNLFCALEFSEYAAKAGVQ 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGCQ+D+ +  +         P P  P IVLL     GY  L++L S  YL D   Q 
Sbjct: 64   PIIGCQIDLGLSADEPAQRNHTRPEPPAP-IVLLAQNEAGYMNLMKLNSCAYL-DADGQL 121

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +I +  L  + + G+I L+GG  GP+ R         AE  +     +F DRLYV LQR
Sbjct: 122  PQISIDDLA-MYSGGVICLSGGPDGPVGRLLRAGQRPAAEALMAQLAAIFPDRLYVELQR 180

Query: 189  HR------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            H         +   E   V++AY  +LPLVATN+  F     YEAHD L+ +A    V Q
Sbjct: 181  HPVDGGLPEAEHLSEQGHVEMAYAMDLPLVATNDVYFPKTSIYEAHDALICIADGAYVDQ 240

Query: 243  KD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             + R R+TP HY K++ EMV++F+DLPEA+ NTVEIA+RC+F +    PILP+F + E D
Sbjct: 241  NEPRRRLTPQHYFKSQQEMVTLFADLPEAIANTVEIAKRCAFKVYTRDPILPKFADNEID 300

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                    EL+ +A AGL  RL    I      +DY +RLDFEL +I  M F GYFLIVA
Sbjct: 301  --------ELKRQAHAGLTDRLK--VIPHAVSVEDYEKRLDFELGIIEGMGFPGYFLIVA 350

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++AK N+IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDID
Sbjct: 351  DFIKFAKDNDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDID 410

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQ+PY QVD+L K+IP 
Sbjct: 411  FCMDRREEVIRYVQGKYGRDKVGQIITFGALLSKAAIRDVGRVLQLPYGQVDKLSKMIPV 470

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   PVS+ +A+AD+ R RE    +  VDRLL   Q+LEGL R+ASTHAAG+VIGDR L 
Sbjct: 471  EGVKPVSIVKALADEPRLREMAKNEEVVDRLLTYGQQLEGLLRNASTHAAGVVIGDRSLD 530

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV---- 596
            +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + + G  +    
Sbjct: 531  ELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKSGRDLHTGP 590

Query: 597  --------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
                          D++ IP DD  +Y L     T+ +FQ+ESSGM  AL  M+PDCIED
Sbjct: 591  MGAELYVPATGTINDINAIPLDDEASYKLYAAAKTVAVFQVESSGMMDALRRMKPDCIED 650

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            IIALV+LYRPGP++NI  +   KNG  +   +HP ID +L ETQG+I+YQEQVMQIAQ +
Sbjct: 651  IIALVALYRPGPMENIPKFCEVKNGLSEREKLHPSIDHILDETQGIIVYQEQVMQIAQEM 710

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +GYSL  AD+LRRAMGKK++E MD +K +F++G+ ++G+ K  A+ +++LL KFA+YGFN
Sbjct: 711  AGYSLGGADLLRRAMGKKLQEAMDVEKPKFLAGSLEHGVDKKKAMEVWDLLDKFANYGFN 770

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821
            KSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++   +   PP V
Sbjct: 771  KSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLGLPWSPPCV 830

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME---ASADKPFDSLEDFCSRVDSKKLN 878
            NT    F V +  + Y L A+K VG      I++   A    PF +L D   RVD K++ 
Sbjct: 831  NTSLATFDVQNGTLVYGLGALKNVGVDAMGLIVDARLAEGMSPFSTLFDLARRVDIKRVG 890

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            +R LE L  AGA D    +R ++  SLD +  Y+  + + + +   ++F    G   D +
Sbjct: 891  KRPLEMLARAGAFDVLDPNRRKVFASLDALVGYSSAIHEQKNSNQVSLF----GEAGDDL 946

Query: 939  TLEKFSVENS---SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNN 994
               + S       + R   E + +GFY SGHPLD Y   L++   +   +E  A   G  
Sbjct: 947  PEPRLSAVQDWLPAERLSEEFKAVGFYLSGHPLDDYMAALKRTEKVLTLDEVTAKAAGGA 1006

Query: 995  I--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  ++A  V  +Q++K+ +G+R  +V  S+P  +YE   F
Sbjct: 1007 MVCKMAGTVAGRQERKSARGNRFAFVQLSDPTGQYEVTMF 1046


>gi|254466532|ref|ZP_05079943.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacterales bacterium Y4I]
 gi|206687440|gb|EDZ47922.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacterales bacterium Y4I]
          Length = 1148

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1039 (47%), Positives = 675/1039 (64%), Gaps = 51/1039 (4%)

Query: 27   LSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMT 86
            + L  + D       PAIA+TDTNNLFSALEFS  A  AG+QPIIGCQ+D+   +     
Sbjct: 1    MRLKKLPDLCKKHGMPAIAVTDTNNLFSALEFSVSASGAGVQPIIGCQVDLRFAE----P 56

Query: 87   NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146
              G+ P P  P +VLL  +  GY+ L++L S +YL  QG +   + L  L+   + G+I 
Sbjct: 57   APGERPKPPAP-LVLLAQSEAGYEHLMKLNSCLYL-RQGGELPHVTLEELESY-SGGVIC 113

Query: 147  LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYRESQV 200
            L+GG  GP+ R         AE  +   K +F DRLYV LQRH G       ++  E   
Sbjct: 114  LSGGPDGPVGRLLQMGQRPAAEALMQRLKAIFPDRLYVELQRHPGEHGQPEAEKQTERGH 173

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSE 259
            V++AY   LPLVATN+  F   E +EAHD ++ +A    V Q + R R+T  HY K++ E
Sbjct: 174  VEMAYAMGLPLVATNDVYFPDTEMFEAHDAMICIAEGAYVDQVEPRRRLTAQHYFKSQEE 233

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            MV++F+DLPEA+ENTVEIARRC+F+     PILP+F + E          ELR  A  GL
Sbjct: 234  MVALFADLPEAIENTVEIARRCAFMAYRRDPILPKFADDEV--------AELRRIANEGL 285

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
            + RLA   I      ++Y++RLDFEL +I  M F GYFLIVADFIQWAK ++IPVGPGRG
Sbjct: 286  QQRLA--VIPHAVSVEEYQERLDFELGIIEGMGFPGYFLIVADFIQWAKDHDIPVGPGRG 343

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            SGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVI+YVQ KYG
Sbjct: 344  SGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIKYVQEKYG 403

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRF 498
             ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL KLIP +   P+S+  A+ ++ R 
Sbjct: 404  RDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSKLIPVEGVKPMSIADALKEEPRL 463

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
             E    +P VDRLL   Q++EGL R A THAAG+VIGDRPL  LVP+YRD RSD+P TQF
Sbjct: 464  SEEARNEPVVDRLLTYGQQVEGLLRSAGTHAAGVVIGDRPLDALVPLYRDPRSDMPATQF 523

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ------------------RGVKVDLSL 600
            NMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q                   G +  ++ 
Sbjct: 524  NMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDLHIAADGTQLYEPPEGAENQINA 583

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD  TY L +   T+ +FQ+ES+GM  AL+ M+P CIEDI+ALV+LYRPGP++NI V
Sbjct: 584  IPLDDKVTYDLYSRAKTVAVFQVESTGMMDALKRMKPTCIEDIVALVALYRPGPMENIPV 643

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y   KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQIAQ+++ Y+L  AD+LRRAMGKK
Sbjct: 644  YCEVKNGQREITSVHPLIDHILEETQGIIVYQEQVMQIAQVMANYTLGGADLLRRAMGKK 703

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            IKE MD ++ +F  GA++NG+ K  A  +F+LL KFA+YGFNKSHAAAYAV+SYQT W+K
Sbjct: 704  IKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFANYGFNKSHAAAYAVVSYQTGWLK 763

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
             ++PVEF+A  M  ++   +K+  + ++ ++   ++ +PP +N     F V +  + Y+L
Sbjct: 764  ANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLGLKYVPPCINRSLATFNVVNGELVYAL 823

Query: 840  AAIKGVGTTTARHIMEA----SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             A+K VG    R + EA      ++PF ++ DF  RV+ KK+ +R LE L  AGA D   
Sbjct: 824  GALKNVGLDVMRLVAEARKENGYERPFVNVFDFARRVNLKKVGKRPLEMLARAGAFDQLD 883

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R ++ +SL  +  Y+  V   R +   ++F  E G    +  L        + R   E
Sbjct: 884  SNRRRVFESLGALVDYSAAVHDQRNSSQVSLFG-EAGEDLPEPRLPSVPDWLPAERLSEE 942

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNI-RLAAMVVSKQQKKTRKGS 1013
             + +GFY SGHPLD Y P L++  +   +E  A   RG  + ++A +V  +Q++K+ +G+
Sbjct: 943  FKAIGFYLSGHPLDDYMPALKRKDVMTLDEVTAKAERGPFMAKMAGVVAGRQERKSARGN 1002

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            R  +   S+P+  +E   F
Sbjct: 1003 RFAFAQLSDPSGAFEVTLF 1021


>gi|84500130|ref|ZP_00998396.1| DNA polymerase III, alpha subunit [Oceanicola batsensis HTCC2597]
 gi|84392064|gb|EAQ04332.1| DNA polymerase III, alpha subunit [Oceanicola batsensis HTCC2597]
          Length = 1134

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1024 (48%), Positives = 670/1024 (65%), Gaps = 51/1024 (4%)

Query: 42   PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
            PA+A+TDTNN+FSALEFS  A   GIQPIIGCQ+D+ M  + +   + K P P    +VL
Sbjct: 2    PAVAVTDTNNMFSALEFSVTASGEGIQPIIGCQVDL-MYLDRQPGEKPKAPAP----VVL 56

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
            L  +  GY+ L+ L S +YL   G Q  ++ L  L+E   + +I LTGG  GP+      
Sbjct: 57   LAQSEAGYENLMRLNSCLYLTKPG-QLPQVTLDELREFSGD-VICLTGGPDGPVGMLLQA 114

Query: 162  NSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYRESQVVQLAYTHELPLVATN 215
                 A+  +   +++FGDRLYV LQRH G       +R  E   V++AY  ELPLVATN
Sbjct: 115  RQRPAAQTLMDRLREMFGDRLYVELQRHPGEGGLPEKERLTERGFVEMAYAMELPLVATN 174

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
            +  F  E  YEAHD L+ +A    V Q++ R R+T  HY K   EM ++F+DLPEALENT
Sbjct: 175  DVYFPKEGMYEAHDALICIADGAYVDQQEPRRRLTAQHYFKTPEEMATLFADLPEALENT 234

Query: 275  VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
            VEIARRC+F+     PILP+F + E          ELR  A AGL+ RLA   I      
Sbjct: 235  VEIARRCAFMAYRRDPILPKFADDEV--------AELRRMANAGLQARLA--VIPHAVSP 284

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
            ++Y++RLDFEL +I  M F GYFLIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD
Sbjct: 285  EEYQERLDFELGIIEGMGFPGYFLIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITD 344

Query: 395  IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
            +DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +
Sbjct: 345  LDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLS 404

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLE 513
            KAA+RD+GR LQMPY QVDRL K+IP +   PVS+  A+  + R R     +  V RLL+
Sbjct: 405  KAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSISDALKQEERLRAEARNEEVVKRLLD 464

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
               ++EGL R+ASTHAAG+VIGDRPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDF
Sbjct: 465  YGMEVEGLLRNASTHAAGVVIGDRPLDRLVPLYQDPRSDMPATQFNMKWVEQAGLVKFDF 524

Query: 574  LGLKTLTLLQKSLDFL---------AQRGVKV---------DLSLIPFDDHETYHLLTTK 615
            LGLKTLT++Q +++ +         A  G ++          ++ IP DD +TY L +  
Sbjct: 525  LGLKTLTVIQNAIEQIHAGGRDLHTAADGAQIYEPFPGAENQINAIPLDDAKTYELYSRA 584

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
             T+ +FQ+ESSGM  AL+ M+P CIEDI+ALV+LYRPGP++NI  Y   KNG+ +I S+H
Sbjct: 585  KTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPMENIPTYCEVKNGQREIESVH 644

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            PLID +L+ETQG+I+YQEQVMQIAQ ++GY+L  AD+LRRAMGKKIKE MD ++ +F  G
Sbjct: 645  PLIDHILEETQGIIVYQEQVMQIAQEMAGYTLGGADLLRRAMGKKIKEAMDAERPKFEKG 704

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A++ G+ K  A  +F+LL KFA+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  +
Sbjct: 705  AAEKGVEKKKASEVFDLLEKFANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCD 764

Query: 796  MDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
            +   EK+  + ++  +Q  +  +PP VN     F V D  + Y+L A+K VG    R ++
Sbjct: 765  IHLTEKLAIYFEEVKKQLGLPYIPPCVNRSDSAFTVKDGALVYALGALKNVGLDAMRLVV 824

Query: 855  EA----SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
            E       DKPF +L DF  RV+ K++ +R LE +  AGA D    +R ++  SLD + +
Sbjct: 825  EGRRVDGEDKPFVNLFDFARRVELKRVGKRPLEMMARAGAFDVLDPNRRRVFDSLDALVQ 884

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            Y+  + + + +   ++F  + G    +  L        + R   E + +GFY SGHPLD 
Sbjct: 885  YSAAIWEQKQSSQVSLFG-DAGEDLPEPRLSPVQDWLPAERLAEEFKAIGFYLSGHPLDD 943

Query: 971  YKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            Y   L++  IK  +E      G  +  ++A +V  +Q++K+ +G+R  +V  S+    YE
Sbjct: 944  YSAALKRKDIKTLDEVWQMASGGALIAKMAGVVAGRQERKSARGNRFAFVQISDRTGAYE 1003

Query: 1029 ANFF 1032
               F
Sbjct: 1004 CTVF 1007


>gi|83858389|ref|ZP_00951911.1| DNA polymerase III subunit alpha [Oceanicaulis alexandrii HTCC2633]
 gi|83853212|gb|EAP91064.1| DNA polymerase III subunit alpha [Oceanicaulis alexandrii HTCC2633]
          Length = 1150

 Score =  942 bits (2436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1033 (48%), Positives = 683/1033 (66%), Gaps = 22/1033 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+V S YSLLEGA+ +            PA A+TD+NNLF ALEFS+     G+QPI
Sbjct: 6    FVHLRVRSPYSLLEGAIRIKETAALCKTFSMPAAALTDSNNLFGALEFSEVLSGEGVQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L I +++       G+   P   ++VLL  +  GY  L++L S  YL         
Sbjct: 66   IGVTLSIQVEE----PRPGERSRPDG-TLVLLAQSELGYANLMKLSSAAYLDVAATDEPH 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            + +  + E  ++GLI LTGG  G ++R      +  A++ L   +  F DRLY+ LQRH 
Sbjct: 121  VPIDRVLE-HSDGLICLTGGFDGVLNRFVCAGRTGPAQELLDRLRARFPDRLYLELQRHG 179

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            R  D   E  +V  AY  +LPLVATN   F   E Y+AHD L+ ++    VS +DR ++T
Sbjct: 180  RADDVTAEDWLVDRAYALDLPLVATNEPHFPRSELYQAHDALLCISEGAYVSMEDRRKLT 239

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +H  K+ + M   F+DLPEA+ NTVEIA+RC+F  +   PILP F   E D   + E  
Sbjct: 240  AEHDFKSGAAMADRFADLPEAIANTVEIAQRCAFRPRTSKPILPSF-PTEGD---RNEAE 295

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ELR +++AGLE RL++  +A    A  Y +RLD+EL +I RM F GYFLIV+DFIQWAK 
Sbjct: 296  ELRARSIAGLEDRLSKIELADTREA--YFERLDYELGIIERMGFPGYFLIVSDFIQWAKA 353

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            ++IPVGPGRGSGAGS+ A+ALTIT++DPLRF LLFERFLNP+R+SMPDFD+DFCQDRR E
Sbjct: 354  HDIPVGPGRGSGAGSLVAWALTITNLDPLRFGLLFERFLNPERVSMPDFDVDFCQDRRGE 413

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VIRYVQ +YG +RVAQIITFG+LQA+A +RDVGR LQ+P+  VDR+ K +PN+PA P++L
Sbjct: 414  VIRYVQERYGQDRVAQIITFGTLQARAVVRDVGRVLQLPFGLVDRIAKQVPNNPAQPITL 473

Query: 490  -QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+  + + +E +  D  VDRL+ ++ +LEGL+R+ASTHAAG+VIGDRPL++LVP+Y+D
Sbjct: 474  AEAVKTEPKLQEMQRNDEMVDRLINVALQLEGLFRNASTHAAGVVIGDRPLTELVPLYQD 533

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHE 607
             RSDLP TQFNMKW+E AGL+KFDFLGLKTLT++ ++L ++   G+ + D+  I   D  
Sbjct: 534  PRSDLPATQFNMKWVEPAGLVKFDFLGLKTLTVISRALSYIESAGLDRPDMDAISLTDPA 593

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY LL    ++G+FQLES+GMR  L  ++PD IEDIIAL+SLYRPGP+ NI VY +RK G
Sbjct: 594  TYELLGVGASIGVFQLESTGMRDTLRKLKPDSIEDIIALISLYRPGPMKNIDVYVDRKFG 653

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            + +   +HP ++P+LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKK KEEMD+
Sbjct: 654  RAEPDYLHPDLEPVLKETYGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGKKKKEEMDQ 713

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+ RF  GA K G+S+  A  IF+L+A+FA YGFNKSHAAAYA+I+YQT W+K ++P  F
Sbjct: 714  QRVRFNEGAEKRGVSREKANYIFDLVAEFAGYGFNKSHAAAYALIAYQTGWLKANHPAAF 773

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +A  M+L+  N EK+  F Q+A++  ++++PP VN    DF + D +I Y+L AI+ VG 
Sbjct: 774  MAGLMSLDSANTEKLAVFFQEAKRIGLEVLPPDVNASEADFSLEDGKIRYALGAIRNVGY 833

Query: 848  TTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            +   H+ +   A  PF  + DF  RVD +++N+R  E+L  AGA D     R + L S +
Sbjct: 834  SAMEHVADVRKAGGPFRDVFDFAERVDPRQVNKRAFENLARAGAFDTLEPDRAKALASAE 893

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI---TLEKFSVENSSVRFENEQRVLGFYF 963
             +   +Q  +  R +   ++F         K+    L +    +   R + E   +G+Y 
Sbjct: 894  ILLSVSQNAQSERDSAQASLFGGGGEGGGTKLERPNLPEPEPWDPVRRLDEELAAIGYYL 953

Query: 964  SGHPLDVYKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKT-RKGSRIGWVTF 1020
            SGHPLD   P L + G+  + +  S A       RLAA+V  +Q+K + R G +  +VT 
Sbjct: 954  SGHPLDDMMPALGRRGVVVFADLPSKAAEGARAARLAAVVRRRQEKVSQRSGEKFAFVTL 1013

Query: 1021 SEPAKEYEANFFP 1033
            S+P+ E+EA   P
Sbjct: 1014 SDPSGEFEALVPP 1026


>gi|209964522|ref|YP_002297437.1| DNA polymerase III subunit alpha [Rhodospirillum centenum SW]
 gi|209957988|gb|ACI98624.1| DNA polymerase III alpha subunit [Rhodospirillum centenum SW]
          Length = 1165

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/1047 (48%), Positives = 707/1047 (67%), Gaps = 30/1047 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS+YSL EGA+ +  ++        PA+A+TDT NLF  LEF+  A  AGIQPI
Sbjct: 4    FIHLRVHSAYSLSEGAIKVKELVKLCQKQGMPAVAVTDTGNLFGCLEFAMAAADAGIQPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGCQ+ I      K    G+T  P    +VLLV + +GY+ L++LVS+ YL  +     +
Sbjct: 64   IGCQMWIRSWGPQK-RGLGRTTGPAADQLVLLVQSQQGYRNLMKLVSKAYLETEPGLLPQ 122

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            + +  L E  +EGLI LTGG  G + R         AE+ LL    LF  RLYV L RH 
Sbjct: 123  VSVDDL-EGHSEGLICLTGGPGGGVGRLLAEGQKPHAEELLLRLAALFPGRLYVELMRHP 181

Query: 190  -----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                 +  DR  E  ++ LAY H+LPLVATN+  F     ++AHDVL+ +A    + Q++
Sbjct: 182  EGPMGQAEDRI-EPDLIDLAYAHDLPLVATNDVYFADPGMHQAHDVLLCIAEGAYIMQEE 240

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R RVTP H  K+ +EM  +F+DLPEA++NTV IARRC+++ +   PILP F+  +  + Q
Sbjct: 241  RRRVTPHHCFKSAAEMRELFADLPEAVDNTVVIARRCAYMPKKVNPILPAFVPGDSKEAQ 300

Query: 305  KE-EENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGY 356
            +E E +ELR +A  GL  RL +         +        YR+RLDFELN I +MKF GY
Sbjct: 301  EELEADELRRQAHEGLTWRLEKYVFTPDQTPETRTEIEAQYRERLDFELNTIVKMKFPGY 360

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV+DFI+WAK   IPVGPGRGSGAGS+ A++L+ITD+DP+R+ LLFERFLNP+R+SMP
Sbjct: 361  FLIVSDFIKWAKGQGIPVGPGRGSGAGSLVAWSLSITDLDPIRYGLLFERFLNPERVSMP 420

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFCQDRRDEVIRYVQ KYG+++VAQIITFG LQA+A +RDVGR LQMPY QVDR+C
Sbjct: 421  DFDVDFCQDRRDEVIRYVQRKYGYDKVAQIITFGKLQARAVVRDVGRTLQMPYGQVDRIC 480

Query: 477  KLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            KLIPN+PA+PV LQ AI  +   ++ R +D +V RLL+I+ KLEGLYRHASTHAAG+VIG
Sbjct: 481  KLIPNNPANPVGLQQAIDGEPLLQDMRKSDETVGRLLDIALKLEGLYRHASTHAAGVVIG 540

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            DRPL +LVP+YRD RSD+PVTQFNMK++E AGL+KFDFLGLKTL++L+ ++D +  R V 
Sbjct: 541  DRPLDELVPLYRDPRSDMPVTQFNMKYVELAGLVKFDFLGLKTLSVLKTAVDHVRHRDVD 600

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +DL  +P  D ++Y LL    + G+FQLESSGMR  L  M+P+ IEDIIALVSLYRPGP+
Sbjct: 601  LDLLDLPMLDEKSYGLLGRAESSGVFQLESSGMRDVLRRMKPNRIEDIIALVSLYRPGPM 660

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  Y   K G+E    +HP ++P+LKET G+++YQEQVMQIAQ+L+GYSL  AD+LRR
Sbjct: 661  DNIPKYIKVKFGEEAPDYMHPSLEPILKETFGIMVYQEQVMQIAQVLAGYSLGGADLLRR 720

Query: 716  AMGKKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AMGKKIKEEM+K++ +FI+GA  K G+ +  +  IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 721  AMGKKIKEEMEKERAKFIAGAKEKMGVDEEHSGLIFDQVNKFAGYGFNKSHAAAYALVAY 780

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---- 830
            QTA++K ++PVEF+AA+MT ++ N +K+ +F Q+  +  ++++PP +N     F V    
Sbjct: 781  QTAYLKANFPVEFMAATMTYDLGNTDKLNQFKQELDRLRVRLLPPDINRSGERFTVEVMP 840

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             GD  + Y+LAAIKGVG      ++ E  A+ PF  + DF  RVD+  +N+R++E LV A
Sbjct: 841  NGDRAVRYALAAIKGVGLPAMEAVVAERRANGPFRDIFDFARRVDTGAINKRMMEKLVCA 900

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D     R QL   LD I ++AQ   + R +   ++F       +    L + +  + 
Sbjct: 901  GAFDALNAHRHQLFAGLDTIMRFAQSEAQQRESGMASLFGASAALKTPD--LPRIADWDP 958

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIR--LAAMVVSKQ 1005
              +  +E   +GFY S HPLD Y   L ++G+  + +  A + RG + R  +A +VV++Q
Sbjct: 959  LEKLRHEFEAIGFYLSAHPLDGYGKALERLGVVRFADLAARVARGGSTRFKMAGIVVARQ 1018

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++  + G+R  +++ S+ +  +E   F
Sbjct: 1019 ERTAKSGNRFAFISMSDSSGVFEVTLF 1045


>gi|329115626|ref|ZP_08244348.1| DNA polymerase III subunit alpha [Acetobacter pomorum DM001]
 gi|326695054|gb|EGE46773.1| DNA polymerase III subunit alpha [Acetobacter pomorum DM001]
          Length = 1139

 Score =  941 bits (2431), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1038 (47%), Positives = 680/1038 (65%), Gaps = 40/1038 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS+YSL +GA+ + +I+        PA+ I D+ NLF ALEFSQ    +GIQPI
Sbjct: 6    FVHLRVHSAYSLSQGAIRVPDIVGLAKEMHMPAVGIADSGNLFGALEFSQYCTKSGIQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG Q+ +  +++       K   P  P +VLL     G   L + +S     +       
Sbjct: 66   IGSQIGLPARND-------KPGAPAEP-VVLLAQNEAGLANL-QFLSSAGFQNSDPADPF 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L  L E   EGL++LTGG+ GP+ +      ++ AEK L    + FGDRL V L RH 
Sbjct: 117  VSLDLLCE-KAEGLLLLTGGTRGPLFQMLAEGQTEDAEKWLARVHEAFGDRLIVELHRHG 175

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             G ++  E  V+ LA    LPLVATN   F + + YEA D L+ +A    +++KDR RVT
Sbjct: 176  LGVEKAVEPGVLTLADRFGLPLVATNECFFPTPKMYEAQDALLCIAQGRTMAEKDRFRVT 235

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK--EE 307
            P+H+ K    M ++F+DLP+A +NT+EIARRC+  ++   P+LP      C  +++   E
Sbjct: 236  PEHWFKPPEMMRALFADLPDACDNTLEIARRCAIKVETRKPLLP-----VCPKVREGATE 290

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR  A  GLE R++ G        + Y++RL FEL++I++M F GYF+IVADFIQWA
Sbjct: 291  DETLRAMAWEGLEHRMS-GMKLDAETVEKYKERLRFELDIISKMGFPGYFMIVADFIQWA 349

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K + IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQDRR
Sbjct: 350  KAHGIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQDRR 409

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV+++YG +RVAQIITFG LQA+AA+RDVGR L +PY  V+R+ +LIPN+PA PV
Sbjct: 410  DEVISYVRHEYGSDRVAQIITFGKLQARAAVRDVGRVLGLPYGMVNRVAELIPNNPAKPV 469

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L +AIA + + +E R  D ++ RLLEI+Q+LEGL+RHASTHAAG+VIGDRPL QLVP+Y
Sbjct: 470  TLKEAIAGEPKLQEMRDNDEALRRLLEIAQQLEGLFRHASTHAAGVVIGDRPLVQLVPLY 529

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            RD +SD  VTQ+NMK++E+AGL+KFDFLGL TLT+L++ +DF+ + G  VDLS IP DD 
Sbjct: 530  RDPKSDTLVTQYNMKFVEQAGLVKFDFLGLTTLTILKRGVDFIRRMGKDVDLSHIPLDDP 589

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L    T G+FQ E +GMR  L+ M+P  IED+IA V+LYRPGP+ NI  Y  RK+
Sbjct: 590  KTYEMLGRGDTAGVFQFEGAGMRDVLKQMRPTRIEDLIAAVALYRPGPMANIPDYCRRKH 649

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G E     H  I  +L+ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+ EMD
Sbjct: 650  G-EVWEPPHEEIRDILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIRSEMD 708

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+E F  GA+K GI +  AV +F+L+AKFADYGFNKSHAAAYA +SYQTAWMK ++PV 
Sbjct: 709  HQREIFTEGATKRGIDRDKAVEVFDLMAKFADYGFNKSHAAAYAFVSYQTAWMKANHPVA 768

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAA 841
            FLAA M+L  +  EK+    Q+A + +I ++PP++N    DF V     G   I Y+LAA
Sbjct: 769  FLAACMSLARERTEKLAALRQEAERMHIAVLPPNINKSEADFSVEKQPDGTYAIRYALAA 828

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IK VG      ++E   +KPF +L DF  R+D K +NR  LE+L  AGA +C   +R ++
Sbjct: 829  IKKVGYGAMESLVEVRGEKPFKNLADFAIRIDPKHINRMQLENLAKAGAFECIDKNRARV 888

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSV----RFENEQ 956
             +S D I + A        ++ +   + + G F     +E    VE        R   E 
Sbjct: 889  FRSADVILRRAH-------SQAQEAASGQIGLFGGPGEVEPLRLVEGHDWPEFERLAMEA 941

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
              +GF+ + HPLD Y  +LR++G+    +  + A + G  +++A  VV K+++ TR G++
Sbjct: 942  EAIGFHMTAHPLDAYGSVLRRLGVTRTSQLLTAAELGGGRVKIAGCVVDKKERPTRTGNK 1001

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + WV  S+ +   E   F
Sbjct: 1002 MAWVRLSDASGGCEVTVF 1019


>gi|258543019|ref|YP_003188452.1| DNA polymerase III subunit alpha [Acetobacter pasteurianus IFO
            3283-01]
 gi|256634097|dbj|BAI00073.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-01]
 gi|256637157|dbj|BAI03126.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-03]
 gi|256640209|dbj|BAI06171.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-07]
 gi|256643266|dbj|BAI09221.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-22]
 gi|256646321|dbj|BAI12269.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-26]
 gi|256649374|dbj|BAI15315.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-32]
 gi|256652360|dbj|BAI18294.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-01-42C]
 gi|256655418|dbj|BAI21345.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-12]
          Length = 1139

 Score =  939 bits (2428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1038 (47%), Positives = 678/1038 (65%), Gaps = 40/1038 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS+YSL +GA+ + +I         PA+ I D+ NLF ALEFSQ    +GIQPI
Sbjct: 6    FIHLRVHSAYSLSQGAIRVPDIAGLAKEMYMPAVGIADSGNLFGALEFSQYCTKSGIQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG Q+ +  +++       K   P  P +VLL     G   L + +S     +       
Sbjct: 66   IGSQIGLPARND-------KPGAPAEP-VVLLAQNEAGLANL-QFLSSAGFQNSDPADPF 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L  L E   EGL++LTGGS GP+ +      ++ AEK L    + FGDRL V L RH 
Sbjct: 117  VSLDLLCE-KAEGLLLLTGGSRGPLFQMLAEGQTEDAEKWLARVHEAFGDRLIVELHRHG 175

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               ++  E  V+ LA    LPLVATN   F + E YEA D L+ +A    +++KDR RVT
Sbjct: 176  LAIEKAVEPGVLTLADRFGLPLVATNECFFPTPEMYEAQDALLCIAQGRTMAEKDRFRVT 235

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK--EE 307
            P+H+ K    M ++F+DLP+A +NT+EIARRC+  ++   P+LP      C  +++   E
Sbjct: 236  PEHWFKPPEMMRALFADLPDACDNTLEIARRCAIKVETRKPLLP-----VCPKVREGATE 290

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR  A  GLE R++ G        + Y++RL FEL++I++M F GYF+IVADFIQWA
Sbjct: 291  DETLRAMAWEGLERRMS-GMKLDAETIEKYKERLRFELDIISKMGFPGYFMIVADFIQWA 349

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K + IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQDRR
Sbjct: 350  KAHGIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQDRR 409

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV+ +YG +RVAQIITFG LQA+AA+RDVGR L +PY  V+R+ +LIPN+PA PV
Sbjct: 410  DEVIAYVRREYGADRVAQIITFGKLQARAAVRDVGRVLGLPYGMVNRVAELIPNNPAKPV 469

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L +AIA + + +E R  D ++ RLLEI+Q+LEGL+RHASTHAAG+VIGDRPL QLVP+Y
Sbjct: 470  TLKEAIAGEPKLQEMRDNDEALRRLLEIAQQLEGLFRHASTHAAGVVIGDRPLVQLVPLY 529

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            RD +SD  VTQ+NMK++E+AGL+KFDFLGL TLT+L++ +DF+ + G  VDLS IP DD 
Sbjct: 530  RDPKSDTLVTQYNMKFVEQAGLVKFDFLGLTTLTILKRGVDFIRRMGKDVDLSHIPLDDP 589

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L    T G+FQ E +GMR  L+ M+P  IED+IA V+LYRPGP+ NI  Y  RK+
Sbjct: 590  KTYEMLGRGDTAGVFQFEGAGMRDVLKQMRPTRIEDLIAAVALYRPGPMANIPDYCRRKH 649

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G E     H  I  +L+ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+ EMD
Sbjct: 650  G-EAWEPPHEEIRDILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIRSEMD 708

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+E F  GA+K GI +  AV +F+L+AKFADYGFNKSHAAAYA +SYQTAWMK ++PV 
Sbjct: 709  HQREIFTEGATKRGIDRDKAVEVFDLMAKFADYGFNKSHAAAYAFVSYQTAWMKANHPVA 768

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAA 841
            FLAA M+L  +  EK+    Q+A + +I ++PP++N    DF V     G   I Y+LAA
Sbjct: 769  FLAACMSLARERTEKLAALRQEAERMHIAVLPPNINKSEADFSVEEQPDGTYAIRYALAA 828

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IK VG      ++EA  +KPF +L DF  R+D K +NR  LE+L  AGA +C   +R ++
Sbjct: 829  IKKVGYGAMESLVEARGEKPFKNLADFAIRIDPKHINRMQLENLAKAGAFECIDKNRARV 888

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSV----RFENEQ 956
             +S D I + A        ++ +   + + G F     +E    VE        R   E 
Sbjct: 889  FRSADVILRRAH-------SQAQEAASGQIGLFGGPGEVEPLRLVEGHDWPEFERLAMEA 941

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
              +GF+ + HPLD Y  +LR++G+    +  + A + G  +++A  VV K+++ TR G++
Sbjct: 942  EAIGFHMTAHPLDAYGSVLRRLGVTRTSQLLTAAELGGGRVKIAGCVVDKKERPTRTGNK 1001

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + WV  S+ +   E   F
Sbjct: 1002 MAWVRLSDASGGCEVTVF 1019


>gi|114327944|ref|YP_745101.1| DNA polymerase III subunit alpha [Granulibacter bethesdensis CGDNIH1]
 gi|114316118|gb|ABI62178.1| DNA polymerase III alpha subunit [Granulibacter bethesdensis CGDNIH1]
          Length = 1143

 Score =  939 bits (2427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1035 (48%), Positives = 666/1035 (64%), Gaps = 30/1035 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL+VHS+YSL EGA+  + I         PA+A+TD+ NLF  LEFSQ     G+QP
Sbjct: 5    NFVHLRVHSAYSLSEGAIKTDKIPALARQMAMPAVAMTDSGNLFGILEFSQACAGKGVQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGCQ+ +      +   Q + P P    +VLL     G   +  L S  +L  QG+   
Sbjct: 65   IIGCQIGL-----ARPEQQQRLP-PD--QLVLLARDEAGLANIQRLSSLGFL--QGEPGA 114

Query: 130  RICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            +  L  L+ I    EG+++LTGG+SGP+ R         AE+ L   K+ F DR  + L 
Sbjct: 115  KPQLP-LETILAHAEGVMLLTGGTSGPLARLLAEGQKGEAERLLAVLKEAFPDRTVIELH 173

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH    ++  E  ++ LA    LPLVATN+  F   + YEAHD L+ +A   V+S+ DR 
Sbjct: 174  RHGLRLEKAIEPGLIALADAAGLPLVATNDCYFAQPDMYEAHDALLCIAEGRVLSETDRR 233

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            RVTPDH+ K    M ++FSDLPEA +NT+ IAR C  + +   P+LP  +  +  + Q E
Sbjct: 234  RVTPDHWFKPPEMMRALFSDLPEACDNTIAIARSCVVMAETRKPLLP--VCPKVHEGQTE 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +E  +R  AV GLE R+          A+ YR+RLD+EL+VIARM F GYFLIVADFIQW
Sbjct: 292  DET-VRAMAVEGLERRMEDVGAGPEDRAR-YRERLDYELDVIARMGFPGYFLIVADFIQW 349

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N+IPVGPGRGSGAGSV A+ALTITD+DPLRF+LLFERFLNPDR+SMPDFDIDFCQDR
Sbjct: 350  AKANDIPVGPGRGSGAGSVVAWALTITDLDPLRFNLLFERFLNPDRISMPDFDIDFCQDR 409

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV+ +YG +RVAQIITFG LQAKAA+RDVGR L MP+ QV+++ +LIPN+PA P
Sbjct: 410  RDEVISYVRGEYGGDRVAQIITFGKLQAKAAVRDVGRVLGMPFGQVNKVAELIPNNPAKP 469

Query: 487  VSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +LQ AI  + R ++ R +D +V RLLEI+ ++EGLYRHASTHAAG+VIGDRPL +LVP+
Sbjct: 470  PTLQEAIDGEPRLQQMRESDEAVKRLLEIALQIEGLYRHASTHAAGVVIGDRPLVELVPL 529

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD +SD  VTQF+MK +E AGL+KFDFLGL TLT+LQ+++ FLA  GV VDL+ +P DD
Sbjct: 530  YRDPKSDFLVTQFSMKHVENAGLVKFDFLGLTTLTILQRAVKFLAGLGVSVDLAHVPLDD 589

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              TY +L      G+FQ ES GMR  L  M+PD  ED+IA V+LYRPGP+ NI  Y  RK
Sbjct: 590  ERTYQMLQRGDAGGVFQFESQGMRDVLRQMRPDRFEDLIAAVALYRPGPMANIPAYCQRK 649

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G E     H  I  +L ET G+++YQEQVMQIAQ L+GYSL  AD LRRAMGKKI+ EM
Sbjct: 650  HG-EAWEPPHEDIRDILGETYGIMVYQEQVMQIAQKLAGYSLGAADSLRRAMGKKIRAEM 708

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +  +  F  GASK GI    +  IF+L+ KFADYGFNKSHAAAYA+++YQTA+MK +YP 
Sbjct: 709  ETHRSIFAEGASKRGIPDAKSGEIFDLMVKFADYGFNKSHAAAYALVAYQTAYMKANYPE 768

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLA 840
             FLAA M+L ++N +K+    Q+A +  I ++PP +N    DF+V     G   I Y+LA
Sbjct: 769  PFLAACMSLAINNTDKLAALRQEATRLGISVLPPDINCSAADFRVEQREDGRLAIRYALA 828

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIK VG +    ++ A  ++ F  L DF +RVD ++LNR  +E+L  AGA D    +R  
Sbjct: 829  AIKRVGLSAMEAVVAARGEQAFTDLADFAARVDPRQLNRMQIENLARAGAFDSLVPNRAA 888

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +  + D I + AQ   + + +    +FA   GT  + + L          R   E   +G
Sbjct: 889  VHGAADMILRRAQAASEEKNSGQIGLFAG-AGT-PEPLRLPSCPDWPDMERLSFEAEAIG 946

Query: 961  FYFSGHPLDVYKPILRKMGI---KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            F+ + HPLDVY   L+K+ +      EE  A      +RLA  VV+ +++ TR GSR+ W
Sbjct: 947  FHLTAHPLDVYTVTLQKLRVLPSNRIEEHAARHGDQRVRLAGCVVNAKERTTRTGSRMAW 1006

Query: 1018 VTFSEPAKEYEANFF 1032
            V  S+    YE   F
Sbjct: 1007 VRLSDAGGSYEITVF 1021


>gi|114770394|ref|ZP_01447932.1| DNA polymerase III subunit alpha [alpha proteobacterium HTCC2255]
 gi|114549231|gb|EAU52114.1| DNA polymerase III subunit alpha [alpha proteobacterium HTCC2255]
          Length = 1128

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/1016 (46%), Positives = 672/1016 (66%), Gaps = 43/1016 (4%)

Query: 36   IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
            +  +Q PA+A+TDTNN+F ALEFS+ A   G+QPI+GCQ+++         ++   P P 
Sbjct: 10   VIKEQMPAVALTDTNNMFGALEFSEIASIEGVQPIVGCQMNLAYMTADNPRDRNPLPLP- 68

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
               IVLL  +  GY  L++L S ++L + G +   I  + LQ+   +GLI LTGG+ GP+
Sbjct: 69   ---IVLLAQSEIGYLNLMKLSSCLFL-ESGDEPAHITTTQLQKY-NDGLICLTGGALGPV 123

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR--------ESQVVQLAYTH 207
             +         A+  L    ++F +R YV +QRH G D  +        E   +++AY+ 
Sbjct: 124  GQLLQDGHIDKAKILLKHLSEIFLNRTYVEIQRH-GSDGEKYTLEEQKTEKYFLEMAYSM 182

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSD 266
            ELPLVATN+  F + E Y AHD L+ ++  + V Q+D R R+TP+HY K+  EM+ +F D
Sbjct: 183  ELPLVATNDVYFPNREMYAAHDALLCISEGSYVDQQDGRRRLTPEHYFKSSGEMIELFKD 242

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
            LPEA++NT+EIA+RC+F +    PILP+F E   D++Q     ELR +A  GL+ RL   
Sbjct: 243  LPEAIDNTIEIAKRCAFKVYKRDPILPKFAE---DEVQ-----ELRRQANEGLKKRLE-- 292

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
             I        Y+ RL+FEL++I  M F GYFLIVADFI+W+K N+IPVGPGRGSGAGS+ 
Sbjct: 293  VIQHATTVDVYQDRLNFELDIIEGMGFPGYFLIVADFIRWSKSNDIPVGPGRGSGAGSLV 352

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVIRYVQ KYG +RV QI
Sbjct: 353  AYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYVQGKYGRDRVGQI 412

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLAD 505
            ITFG L +KAA+RDVGR LQMPY QVDRL KLIP +   PVS++ A+A++ + RE   ++
Sbjct: 413  ITFGGLLSKAAIRDVGRVLQMPYGQVDRLSKLIPVEGVKPVSIEKALAEEPQLREMAKSE 472

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
              VDR+L+ +Q++EGL R+ASTHAAG+VI DRP+ +LVP+Y+D RSD+P TQFNMKW+E+
Sbjct: 473  EVVDRMLKYAQQVEGLLRNASTHAAGVVIADRPIDELVPLYQDPRSDMPATQFNMKWVEQ 532

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            AGL+KFDFLGLKTLT+++ ++D + +RG+ V++  I  +D  T+ L  +  T+ +FQ+ES
Sbjct: 533  AGLVKFDFLGLKTLTVVKGAVDLIRKRGINVNIDAIDLEDKATFDLYASAKTVAVFQVES 592

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
            SGM  AL  M+P+CIEDI+ALV+LYRPGP++NI  Y + KNG+     +HP ID +L+ET
Sbjct: 593  SGMMDALRRMKPNCIEDIVALVALYRPGPMENIPQYCDVKNGRADRELMHPSIDHLLEET 652

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
            QG+I+YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+ EMDK++ +F+ GA  NG+    
Sbjct: 653  QGIIVYQEQVMQIAQEMAGYSLGGADLLRRAMGKKIQAEMDKERPKFLEGAFNNGVEPKK 712

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A  +++LL KFA+YGFNKSHAAAYAV+SYQTAW+K +YPVEF+A+ M  ++   +K+  +
Sbjct: 713  AEEVWDLLDKFANYGFNKSHAAAYAVVSYQTAWLKANYPVEFMASVMNCDLHLTDKLHVY 772

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDS 864
              + ++  I+I+PP +N     F V D  I Y+L  +K VG+   R   +A  +   F  
Sbjct: 773  FDEVKRLGIEIIPPCINRSEALFSVNDGMIAYALGGLKNVGSDAMRLFTDARINGGLFLD 832

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            L D   RVD +++ +R LE L+ +GA D    +R ++ +SLD +  Y+       +  HE
Sbjct: 833  LIDVARRVDLRRVGKRPLEMLIRSGAFDQLDSNRKKVFESLDALVGYS-------SATHE 885

Query: 925  NIFAHEKGTFSDK---ITLEKFSVENSSV---RFENEQRVLGFYFSGHPLDVYKPILRKM 978
             + + + G F D    +   +  +    +   R   E + +GFY SGHPLD Y   L++ 
Sbjct: 886  EMNSSQGGLFGDAGEDLPAPRLPMPEDWLPIERLTEEHKAIGFYLSGHPLDDYMGALKRK 945

Query: 979  GIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             I    E     +G  I  ++A  V  KQ +K+ KG+R  +   ++P   YE   F
Sbjct: 946  NILTLHELEQKAQGGKIIAKIAGSVSGKQVRKSAKGNRFAFAQLTDPTGAYEVTIF 1001


>gi|294084089|ref|YP_003550847.1| DNA polymerase III subunit alpha [Candidatus Puniceispirillum marinum
            IMCC1322]
 gi|292663662|gb|ADE38763.1| DNA polymerase III, alpha subunit [Candidatus Puniceispirillum
            marinum IMCC1322]
          Length = 1153

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1049 (47%), Positives = 677/1049 (64%), Gaps = 44/1049 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL++H++YSL E  L + N+   ++ D QPA AITDTNN+F ALEFS+     G+QP
Sbjct: 4    NFVHLRLHTAYSLAESTLRIKNLARLVSEDAQPAAAITDTNNMFGALEFSKAMVNVGVQP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G QL+I         +QG         +VLL     GY  L  L+S   L  +   + 
Sbjct: 64   IMGAQLNI-------TDSQGTG------EVVLLAQNETGYVNLSHLLSDALLNSEANANP 110

Query: 130  RICLSWLQEIGTEGLIMLTGG-SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                  L    +EGLI+L+GG   G +          +A+ RL     +   R+Y+ LQR
Sbjct: 111  HCNFDALAA-RSEGLILLSGGVMDGFVGLPASDGRQSLAKSRLQALNTIMQGRVYIELQR 169

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H  G ++  E  +V LA   +LPLVATN+  F S +    HD L+ +     VS+++R +
Sbjct: 170  HGLGAEQVAEPILVALADNLDLPLVATNDCRFDSPKMAGPHDALICIGTGRKVSEENRIK 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +P+HY K+  +M  +F D+PEA+ NTV IA+RCS++    APILP F      D+   E
Sbjct: 230  YSPNHYFKSGKQMTDLFVDIPEAIANTVTIAKRCSYMSPERAPILPAFTAGT--DVT--E 285

Query: 308  ENELRNKAVAGLEVRLAQ-------GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +  L  +A  GL  RL +        A AK   A+ Y+ RL FEL VI +M F GYFLIV
Sbjct: 286  DVALARQAEDGLAHRLERYVYSDDMDAAAKADIAKPYQDRLAFELGVINQMGFPGYFLIV 345

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFIQWAK   IPVGPGRGSGAGSV A+AL+ITD+DPLR+ LLFERFLNP+R+SMPDFDI
Sbjct: 346  ADFIQWAKNAAIPVGPGRGSGAGSVVAWALSITDLDPLRWGLLFERFLNPERVSMPDFDI 405

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQDRRDEVI YVQ KYG +RVAQIITFGSLQA+AALRDVGR L+MPY QVDR+ KLIP
Sbjct: 406  DFCQDRRDEVITYVQEKYGKDRVAQIITFGSLQARAALRDVGRVLEMPYGQVDRIAKLIP 465

Query: 481  NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            N+PA+P ++ QA+  ++  R  R  D  V  L+++S  LEGLYRHASTHAAG+VIGDRPL
Sbjct: 466  NNPANPTTIAQALESEADLRAERNQDEQVADLIDMSLSLEGLYRHASTHAAGLVIGDRPL 525

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            + LVP+YRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ++++F+AQRG++++L 
Sbjct: 526  ADLVPLYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQRAVEFIAQRGIEINLD 585

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +T+ +L+   T+G+FQLES+GMR  L G++PD  EDIIA+V+LYRPGP++NI 
Sbjct: 586  AIPLDDIKTFEMLSAGDTVGVFQLESAGMRDVLRGLKPDRFEDIIAVVALYRPGPMENIP 645

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  RK+   +I  +HP ++P+L ET G++IYQEQV Q AQ+L+GY+L  AD+LRRAMGK
Sbjct: 646  DYVARKHDPSQITYMHPDLEPVLNETYGIMIYQEQVQQAAQVLAGYTLGAADILRRAMGK 705

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KIK EMD Q+  F++GA  N IS+ +A +IF+ +A FA YGFNKSHAAAYA++SYQTA++
Sbjct: 706  KIKAEMDAQRATFVNGAVDNAISEKLASDIFDTIAAFAGYGFNKSHAAAYALVSYQTAYL 765

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--------G 831
            K +YPVEFLAASM L+  N EK+  F Q+ +Q  I I PP VN     F+V         
Sbjct: 766  KANYPVEFLAASMALDAGNTEKLAVFRQECQQKGITIKPPCVNHSFAGFRVEPDNNHPES 825

Query: 832  DN---RIYYSLAAIKGVGT-TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            DN    I Y+L AIK VG    AR   +  A   F+ L DF  R+     NRR +E+LV 
Sbjct: 826  DNDKLAIRYALGAIKNVGAEAMARLTEKRDAGSKFEHLMDFLERLPRDASNRRQMENLVR 885

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGALDC   +R +LL ++D +  +A+ + +++ +   N+F  +  + +  + L       
Sbjct: 886  AGALDCLHANRHELLNNIDYLLAHAETLRRDKESNQNNLFGDDTDSMASSLRLTPCEDWV 945

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN----NIRLAAMVVS 1003
               R + E   LG Y S HPLD Y   L K+ I    E    I        + LA  +  
Sbjct: 946  PMDRLKEEFDALGLYLSAHPLDGYGNQLAKLRIITASELNRQIEAGRPPQRVNLAGSITG 1005

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            KQ + +++G++  +V F++    +E  FF
Sbjct: 1006 KQVRVSQRGNKFAFVQFTDQTGVFETTFF 1034


>gi|88607188|ref|YP_505564.1| DNA polymerase III, alpha subunit [Anaplasma phagocytophilum HZ]
 gi|88598251|gb|ABD43721.1| DNA polymerase III, alpha subunit [Anaplasma phagocytophilum HZ]
          Length = 1127

 Score =  920 bits (2378), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/1028 (46%), Positives = 678/1028 (65%), Gaps = 37/1028 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLLEG + + +++      + PA+A+TD+ NLF +LEFS  A  AG+QPI
Sbjct: 5    FVHLRTHSDYSLLEGMIKVESLVAMCVEQKMPAVALTDSGNLFGSLEFSDCAARAGLQPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC + ++   N             + +I+LL  +AEG+  L  L+S  +   Q ++  R
Sbjct: 65   IGCNIMVEESGN------------NLGNILLLAKSAEGFANLTNLISNGFNNSQLEKINR 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + +  L ++   GLI LTGG    + RA   N   +  + L +  ++F D +YV LQRH 
Sbjct: 113  VNIDDLLKLNG-GLIALTGGHDDILARALLNNGDDL--RALDSILQVFKDNVYVELQRH- 168

Query: 191  GYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            G +  RE +  +++ AY   +PLVATN+  F    D++AHD+L  ++    V Q+DR R+
Sbjct: 169  GLNGQREVEELLIRFAYERNIPLVATNDVFFACRGDFQAHDILSCISTGAYVVQEDRHRL 228

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            TP+HY K  SEM  +FSD+PEA+ NT  IA+RCSFI +V  P LP F    C + + E E
Sbjct: 229  TPEHYFKTASEMYELFSDVPEAVLNTSLIAQRCSFIQEVRKPQLPHF---PCFEGRTEAE 285

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             EL   A+AGLE+RL    I      +D Y +RL +EL V+  M++SGYFLIVADFI+W+
Sbjct: 286  -ELTECALAGLEIRLKSKGIGDDEEQRDLYLKRLKYELGVVISMEYSGYFLIVADFIRWS 344

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++R
Sbjct: 345  KQNDIMVGPGRGSGAGSLIAWSLGITDLDPIEFGLIFERFLNPDRVSMPDFDIDFCQEKR 404

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D+VI YV+ KYG+  VA IITFG LQA+A LRDVGR +Q+PY+Q+DR+CK+IP+DP  PV
Sbjct: 405  DKVIEYVKEKYGY--VAHIITFGKLQARAVLRDVGRVMQIPYAQIDRICKMIPHDPISPV 462

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L +AI  D   +  +  D +V +L+EIS KLEGLYRHAS HAAGIVI D+PL   VP+Y
Sbjct: 463  TLLEAIEMDQNLKAEQENDETVAKLIEISLKLEGLYRHASVHAAGIVICDQPLENFVPLY 522

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S LP+TQ+NMK++EKAGL+KFDFLGL+TLT++ +    +  RG +++LS IP +D 
Sbjct: 523  YDKSSSLPITQYNMKYVEKAGLVKFDFLGLRTLTMIDQICSLIRARGEEIELSKIPLNDK 582

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L+   ++G+FQLES+GMR+A+  ++PD I+DIIAL+SLYRPGP++NI +Y +RK+
Sbjct: 583  KTYEMLSAGDSIGVFQLESAGMREAISKLRPDSIQDIIALISLYRPGPMNNIAIYISRKH 642

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G E+   IHP+++ +LKET GVIIYQEQVM+IA++L+GYSL EAD+LRRAMGKKIKEEMD
Sbjct: 643  GLEEPDYIHPMLECVLKETFGVIIYQEQVMEIARILAGYSLGEADLLRRAMGKKIKEEMD 702

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +Q++ F+ GA  NGI ++ A  IF+L+AKFA YGFNKSHAAAYA+IS+QTA+++ +Y  E
Sbjct: 703  RQRQDFVDGAVSNGIEESKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYLRANYTKE 762

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  ASM L++D+ +K+   CQ A+   I +MPP +N    +F V  N I Y L A+K VG
Sbjct: 763  FFTASMNLDIDDKDKLGLLCQQAKMCGIDVMPPDINLSSAEFTVSGNSIRYGLGALKNVG 822

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
              TA  I+     + +  + DF   V  +   +R LESL+ +G+LD    +R QL  SL 
Sbjct: 823  QLTAHEILPVEGGR-YSDIWDFAGNVRIRSPLKRTLESLIKSGSLDGIHPNRRQLFASLG 881

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVENSSVRFENEQRVLGFYFS 964
             I    +       NK  ++ AH+   FS+K    LE+        + E+E   +GFY  
Sbjct: 882  IILNIIE-------NKKVSMDAHQFSLFSEKEEGQLEEVDDWTEDEKIEHEFATIGFYLR 934

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HPL  Y+ +L K G++ +  S    + + +   A VVS  + ++    R   V  S+P 
Sbjct: 935  YHPLSKYEQVLGKFGVR-FVSSTQEEKESGVTKRAGVVSSVKMRSANKERFAIVRVSDPH 993

Query: 1025 KEYEANFF 1032
               +  F+
Sbjct: 994  GVNDVAFY 1001


>gi|254294080|ref|YP_003060103.1| DNA polymerase III subunit alpha [Hirschia baltica ATCC 49814]
 gi|254042611|gb|ACT59406.1| DNA polymerase III, alpha subunit [Hirschia baltica ATCC 49814]
          Length = 1145

 Score =  919 bits (2375), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/1029 (46%), Positives = 662/1029 (64%), Gaps = 25/1029 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+V S+ SLL   +++  +      +  PA+AITD NN+F ALE S+     G+Q
Sbjct: 13   PRFVHLRVRSALSLLGSMITIKKLCKWTFENGFPAVAITDDNNMFGALELSETLAPMGVQ 72

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PII   L I  + N         P      + L      GY+ ++ L ++ +L +     
Sbjct: 73   PIIAITLHIYDRIN---------PAAEPTELALFAQNEAGYKNMMILTTKGFL-ESPSGG 122

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              + L  + E  +EGLI  TGG +G + +       + A + LL   + F +RLYV LQR
Sbjct: 123  TGVYLDDVLE-HSEGLICTTGGGNGEVTQLCAAGDEEGAREYLLKLNEAFPNRLYVELQR 181

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H R  +   E  +V LAY  +LPLVATN + F+    ++AHD L+ +A ST VS +DRP+
Sbjct: 182  HGRLTEDKAEELLVDLAYELDLPLVATNEARFIKRAQHKAHDALLCIAGSTYVSVQDRPK 241

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +P+ Y+K   EM+++FSDLPEA+ENT EIARRCS+      PILP F   + D     E
Sbjct: 242  ASPEQYMKTEEEMINLFSDLPEAIENTCEIARRCSYRPAWRKPILPNFTGDDGD-----E 296

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL  +A  GL++RL+ G + +    Q Y  RLDFELN+I +M F GYFLIV+DFI+WA
Sbjct: 297  GEELDRQAREGLKMRLSSGILYE--EEQVYWDRLDFELNIIRQMGFPGYFLIVSDFIKWA 354

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+++IPVGPGRGSGAGS+ A+ LTITD+DPLRF LLFERFLNP+R+SMPDFD+DFCQDRR
Sbjct: 355  KEHDIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQDRR 414

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI Y + KYG +RVA IIT+G+LQAKA +RDVGR  Q+P+ QVD+L KLIP +PA+P 
Sbjct: 415  HEVIEYTKRKYGADRVAMIITYGTLQAKAVIRDVGRVHQLPFGQVDKLSKLIPFNPANPP 474

Query: 488  SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +LQ AI  + +F++    +  V  L+E + +LEGLYR+A THAAG+VIGDRPL +L P+Y
Sbjct: 475  TLQEAIDGEPKFKQEMRENEDVRNLVETALELEGLYRNAGTHAAGVVIGDRPLVELSPLY 534

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            +D +SD+P TQFNMKW E  GL+KFDFLGLKTLT++Q++L F+   G ++      FDD 
Sbjct: 535  KDPKSDIPATQFNMKWAEHNGLVKFDFLGLKTLTVIQRALKFVISEGKQLTEKWHTFDDE 594

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            E Y LL++  TLG+FQLES+GMR  L  ++PDCIEDIIAL+SLYRPGP+ NI  Y  RK 
Sbjct: 595  EAYKLLSSGETLGVFQLESTGMRDTLRKVKPDCIEDIIALISLYRPGPMKNIDTYVARKE 654

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E+I  +H  + P+L+ET GVI+YQEQVM+IAQ+L+GYSL EAD+LRRAMGKK  EEM 
Sbjct: 655  GREEIDYLHDDLKPVLEETYGVIVYQEQVMRIAQILAGYSLGEADLLRRAMGKKKPEEML 714

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            KQK RF+ GA+K  +SK  A  IFEL+ +FA YGFNKSHAAAYAVI+YQTA++K  +PVE
Sbjct: 715  KQKVRFLEGAAKKDVSKERAEFIFELVNEFAGYGFNKSHAAAYAVIAYQTAYLKAKHPVE 774

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            FLA SM+L++ N EK+  F Q+ ++  I ++ P +     DF V D +IYY+L A+KGVG
Sbjct: 775  FLAGSMSLDLTNTEKLAAFFQETKRLKIPVVTPDITLCNADFDVRDQKIYYALGAVKGVG 834

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                  +  A  +KPF+ L DF  RVD +++N+RV ++L   G  D    +R +  ++ +
Sbjct: 835  KEAMLDVERARNEKPFEDLFDFAERVDPRQINKRVYQALSKCGGFDQLEKNRAKAFEASE 894

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             +   +    ++R +   ++F  E      +  L K +  +S    + E   +GFY SGH
Sbjct: 895  MLAAMSNAANRDRNSNQNSLFGDEPPM---RPKLPKAAPWSSEKILDYELSSVGFYLSGH 951

Query: 967  PLD--VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            PLD  +  P   ++ +      +   R     +  + V  ++     G +  ++T S+P+
Sbjct: 952  PLDDILEGPARERIVLSSQMMELGRERAALEMIGVVKVRVEKPSMSGGGKFAYITLSDPS 1011

Query: 1025 KEYEANFFP 1033
             EYE    P
Sbjct: 1012 GEYELFVAP 1020


>gi|330994074|ref|ZP_08318004.1| DNA polymerase III subunit alpha [Gluconacetobacter sp. SXCC-1]
 gi|329759020|gb|EGG75534.1| DNA polymerase III subunit alpha [Gluconacetobacter sp. SXCC-1]
          Length = 1144

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1038 (46%), Positives = 671/1038 (64%), Gaps = 35/1038 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS+YSL +GA+ +  ++      + PA+AITDT N+F ALEFSQ     G+QPI
Sbjct: 6    FVHLRVHSAYSLSQGAIRVPELVALAHDMRMPAVAITDTGNMFGALEFSQYCGKKGVQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IGCQL +            ++  P +P+  +VLL   AEG   L + +S    L      
Sbjct: 66   IGCQLGL----------PSRSDKPGMPAEHVVLLARNAEGLANL-QFLSSAGFLQTVTDE 114

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              + L  L E    GL +LTGGS GP+         + A + +      +G  + V L R
Sbjct: 115  PTVTLDLLCERAG-GLFLLTGGSRGPLFHMLAEGQEREATRFMERLHAAYGRYMAVELHR 173

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H +  +R  E  ++ +A    LPLVATN   F   + YEAHD L+ +A    ++++DR R
Sbjct: 174  HGQAAERAVEPGMIAMADRMGLPLVATNECFFPKPDMYEAHDALLCIAQGRTMAERDRWR 233

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--K 305
            VTP+H+ K    M  +F+DLPEA +NT+EIAR C+  ++   P+LP      C  +Q  K
Sbjct: 234  VTPEHWFKPAEAMRELFADLPEACDNTLEIARLCAIKVETCKPLLPM-----CPKVQPGK 288

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E+  LRN A  GL  RL++  + +    + Y +RL FEL++IA M F GYF+IVADFIQ
Sbjct: 289  TEDETLRNMARTGLARRLSRMDVDEETR-RKYEERLAFELDIIANMGFPGYFMIVADFIQ 347

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+++IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQD
Sbjct: 348  WAKEHDIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQD 407

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVIRYV+N+YG +RVAQIITFG LQA+AA+RDVGR L +P+  V+R+ +LIPN+PA 
Sbjct: 408  RRDEVIRYVRNEYGADRVAQIITFGKLQARAAVRDVGRVLGLPFGMVNRVAELIPNNPAQ 467

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            PV+L QAI  + R +E R  D ++ RLLEI Q+LEGL+RHASTHAAG+VIGDR L +LVP
Sbjct: 468  PVTLKQAIEGEPRLQEMRDEDEAIRRLLEIGQQLEGLFRHASTHAAGVVIGDRELVELVP 527

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +YRD +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+LQ+++ FL   GV VDLS +P D
Sbjct: 528  LYRDPKSDMLVTQYNMKFVEQAGLVKFDFLGLTTLTILQRAVQFLHGMGVAVDLSALPLD 587

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY +L    T G+FQ E +GMR  L+ M+P  +ED+IA V+LYRPGP+ NI  Y  R
Sbjct: 588  DPLTYEMLARGDTGGVFQFEGAGMRDVLKQMRPTRLEDLIAAVALYRPGPMANIPDYCRR 647

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G E     H  I  +L+ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+EE
Sbjct: 648  KHG-EAWEPPHEEIRDILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIREE 706

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MD+Q+E F  GA K GI +  A  +F+L+AKFADYGFNKSHAAAYA++SYQTAWMK ++P
Sbjct: 707  MDRQREIFTEGAMKRGIEREKAAEVFDLMAKFADYGFNKSHAAAYALVSYQTAWMKANHP 766

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDNRIYYS 838
            V F+AA M+L  +  +K+    Q+A +  I ++PP +N    DF V      G   I Y+
Sbjct: 767  VAFIAACMSLAREKTDKLAGLRQEADRLGIPLLPPDINASGADFTVEKLPDGGGYAIRYA 826

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            LAA+K VG    + ++    D+PF  LED  +R+D +++N+  LE+L  AGA D    +R
Sbjct: 827  LAAVKKVGLGAMQSLVAVRGDRPFVDLEDLAARLDPRQVNKMQLENLARAGAFDTILPNR 886

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQ 956
             +   + + + + AQ   +   +    +F       + +  L    V +     R   E 
Sbjct: 887  ARACGAAETVMRRAQANAQQAASGQIGLFGGGGDGPAAREPLRMPRVADWPEFERLNMEA 946

Query: 957  RVLGFYFSGHPLDVYKPILRKMG-IKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGSR 1014
              +GF+ +GHPLD Y P++R++G ++      A   G   +++A  VV ++++ TR G++
Sbjct: 947  DAIGFHLTGHPLDSYGPLMRRLGAVRATGLEAAAQAGIVRVKIAGCVVDRKERPTRTGNK 1006

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + WV  S+ +   E  FF
Sbjct: 1007 MAWVRLSDASGGCEITFF 1024


>gi|296536131|ref|ZP_06898260.1| DNA-directed DNA polymerase III alpha subunit [Roseomonas cervicalis
            ATCC 49957]
 gi|296263543|gb|EFH10039.1| DNA-directed DNA polymerase III alpha subunit [Roseomonas cervicalis
            ATCC 49957]
          Length = 1147

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1043 (46%), Positives = 666/1043 (63%), Gaps = 38/1043 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS+YSL EGA+    + +   A   PA+A+TDT N+F ALEFS+     G+QP
Sbjct: 3    SFVHLHVHSAYSLAEGAIKAEKLAELAKAGGMPAVALTDTANMFGALEFSKACSGKGVQP 62

Query: 70   IIGCQLDI------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            I+GCQL +      D  + L++      P P    +V L   AEG + +  L S+ +L D
Sbjct: 63   IMGCQLFLTRGAADDRPEVLRLP-----PDP----VVALAMDAEGLENVQRLSSQGFLRD 113

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSS-GPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181
                   + L  L++    G+ +LTG S+ GP+ R         A + L   K+ FG DR
Sbjct: 114  DPSGRPTVTLELLKQHAA-GVTLLTGPSTTGPLGRLLLEGRRDAALRLLEELKESFGGDR 172

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            L V L RH    +R  +  +V LA    LPL A N+  F   E YEAHD L+ +A    +
Sbjct: 173  LVVELTRHGLEIERALDPALVALADAAGLPLAAANDIYFSKPEMYEAHDALLCIAEGRTL 232

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            ++ DR RVTP+H+ K+   M ++F+DLPEA +NT+ IARRC+ + +   P LP      C
Sbjct: 233  AEPDRRRVTPEHFFKSAEAMRTLFADLPEACDNTLAIARRCAIMAENRKPELPI-----C 287

Query: 301  DDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              +Q    E   +R+ A  GLE RL   A  +      YR RL+FEL++I +M FSGYFL
Sbjct: 288  PKVQPGMTEAETVRDMAKRGLEARLDAQATPEAERPT-YRTRLEFELDIIEKMGFSGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFIQWAK+  IPVGPGRGSGAGSV A+AL ITD+DPLRF LLFERFLNP+R+SMPDF
Sbjct: 347  IVADFIQWAKQQGIPVGPGRGSGAGSVAAWALLITDLDPLRFGLLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFCQDRRDEVI+YV+ +YG +RVAQIITFG LQAKA +RDVGR + MPY QV+++ +L
Sbjct: 407  DIDFCQDRRDEVIQYVRREYGEDRVAQIITFGRLQAKAVVRDVGRVMGMPYGQVNKIAEL 466

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +PA PV+L QA+  + R +E R AD  VDRL+E +  LEGLYR+ASTHAAG+VIG +
Sbjct: 467  IPFNPAKPVTLQQALDGEPRLQEMRQADEMVDRLMETALVLEGLYRNASTHAAGVVIGRK 526

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            PL   V +YRD RSD+ VTQ++MK++E A L+KFDFLGLKTLT+LQ++++ LA +G+ +D
Sbjct: 527  PLIDTVALYRDPRSDMLVTQYSMKYVENASLVKFDFLGLKTLTVLQRAVEILAGQGITID 586

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD +TY +L    + G+FQ E  GMR+ L  M+PD  ED+IA VSLYRPGP+ N
Sbjct: 587  LAALPLDDAKTYEMLARGDSAGVFQFEGQGMRECLRMMRPDRFEDLIAAVSLYRPGPMAN 646

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y  RK+G E    +HP +  +++ET G+++YQEQVMQI+Q ++GYSL  AD+LRRAM
Sbjct: 647  IPAYCARKHG-EAWEPVHPAMRHLVEETYGILVYQEQVMQISQDVAGYSLGGADLLRRAM 705

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKKI+ EM+ Q++ F+ GA KNG+ +  A  IF+L+ KFA+YGFNKSHAAAYA+++Y TA
Sbjct: 706  GKKIRSEMEAQRKIFVDGAVKNGVPEGKAGEIFDLMEKFAEYGFNKSHAAAYALVAYHTA 765

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GD 832
            ++K ++PV FLAASMTL++D  EK+    Q+A +  I ++PP VN    +FKV     G 
Sbjct: 766  YLKANHPVAFLAASMTLDLDKTEKLANHMQEASRLGIPVLPPDVNRSAAEFKVETMEDGR 825

Query: 833  NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I ++LAA+K VG    + ++ A  A  PF S+ +F  RVD K LN+  LE+L  AGA 
Sbjct: 826  QAIRFALAAVKRVGMQAMQDLVRARDAKGPFRSIAEFAGRVDPKLLNKMQLENLARAGAF 885

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R ++  + + + + AQ   + R +    +F     +  + + L          R
Sbjct: 886  DSLEKNRARMTMAAEVVLRRAQSSAEERNSSQIGLFGGGD-SRPEPLRLPNVPDWPELER 944

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKT 1009
               E   +GF+ S HPLD YK +LRK+ +    +  A        +++A  VV+ +++ T
Sbjct: 945  LTQEAEAVGFHLSAHPLDTYKEVLRKLRVTSIAQLQAKAEAGAAVLKIAGTVVNSKERTT 1004

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
            R GSR+ W+  S+ +   E   F
Sbjct: 1005 RTGSRMAWLKLSDSSGSTEVTLF 1027


>gi|162148792|ref|YP_001603253.1| DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus
            PAl 5]
 gi|161787369|emb|CAP56964.1| putative DNA polymerase III subunit alpha [Gluconacetobacter
            diazotrophicus PAl 5]
          Length = 1142

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1034 (47%), Positives = 661/1034 (63%), Gaps = 29/1034 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS+YSL +GA+ +  I       + PA+AITDT NLF ALEFSQ     G+QPI
Sbjct: 6    FVHLRVHSAYSLSQGAIRIPEIASLAQDMRMPAVAITDTGNLFGALEFSQYCSGKGVQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGCQ+ +  +++       K   P  P +VLL     G   L  L S+ +L     +   
Sbjct: 66   IGCQVGLPPRND-------KPGAPAEP-VVLLAQDETGLMNLQYLSSQGFLTGDTAEPT- 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L  L E   EGLI+LTGG+ GP+ R           + L      FGDRL V L RH 
Sbjct: 117  VTLDVLCE-RAEGLILLTGGTRGPLFRMLADGQQDEVAQWLERLHAAFGDRLAVELHRHG 175

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               ++  E  ++ LA    LPLVATN   F   E YEAHD L+ +A    ++++DR RVT
Sbjct: 176  LPVEKAVEPGMIALADRMGLPLVATNECFFPRPEMYEAHDALLCIAQGRTMAERDRWRVT 235

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK--EE 307
            P+H+ K  + M  +F+DLPEA +NT+ IARRC+  ++   P+LP      C  +Q    E
Sbjct: 236  PEHWFKPPAMMRDLFADLPEACDNTLAIARRCAVRVETRKPLLP-----VCPKVQPGATE 290

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E  LR  A  GL  RLA+  +      Q YR RL FEL++IA+M F GYF+IVADFIQWA
Sbjct: 291  EQTLRAMAEDGLARRLARMDMDDATR-QVYRDRLTFELDIIAKMGFPGYFMIVADFIQWA 349

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K ++IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQDRR
Sbjct: 350  KAHDIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQDRR 409

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVIRYV+ +YG +RVAQIITFG LQA+AA+RDVGR L +P+  V+++ +LIPN+PA PV
Sbjct: 410  DEVIRYVRGEYGPDRVAQIITFGKLQARAAVRDVGRVLGLPFGMVNKVAELIPNNPAKPV 469

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L QAI  + R +E R  D ++ RL+EI+ +LEGLYRHASTHAAG+VIGDR L +LVP+Y
Sbjct: 470  TLKQAIDGEPRLQEMRDTDEAIRRLMEIALQLEGLYRHASTHAAGVVIGDRQLVELVPLY 529

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            RD +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+LQ++  FL    V VDL+ +P DD 
Sbjct: 530  RDPKSDMLVTQYNMKFVEQAGLVKFDFLGLTTLTILQRACQFLKGLDVTVDLTTLPLDDA 589

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             TY +L    T G+FQ E +GMR  L+ M+P  +ED+IA V+LYRPGP+ NI  Y  RK+
Sbjct: 590  PTYEMLARGDTGGVFQFEGAGMRDVLKQMRPTRLEDLIAAVALYRPGPMANIPDYCRRKH 649

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G E     H  I  +L+ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+ EMD
Sbjct: 650  G-EAWEPPHEEIRSILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIRAEMD 708

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            KQ+E F  GA   GI    A  +F+L+AKFADYGFNKSHAAAYA++SYQTAWMK ++PV 
Sbjct: 709  KQREIFTEGAVGRGIDPEKAAEVFDLMAKFADYGFNKSHAAAYALVSYQTAWMKANHPVP 768

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR--IYYSLAA 841
            FLAA M+L  +  +K+    Q+A +  I ++PP +N    DF V    D R  I Y+LAA
Sbjct: 769  FLAACMSLAREKTDKLAALRQEAERLGIPVLPPDINASGPDFTVERLADGRLGIRYALAA 828

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +K VG      ++ +  D+PF  L D  +RVD ++LN+  +E+L  AGA D    +R  +
Sbjct: 829  VKKVGFAAMEALVASRGDRPFADLSDLAARVDPRQLNKMQIENLAKAGAFDTVVPNRALV 888

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSSVRFENEQRVLG 960
              + + + + A    +   +    +F     T + + + L   +      R   E   +G
Sbjct: 889  AAAAETVLRRANTKAQEAASGQIGLFGGGGPTPAPEPLRLPDVTDWPEFERLGMEAEAIG 948

Query: 961  FYFSGHPLDVYKPILRKMG-IKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            F+ + HPLD Y  +LR++G ++      A   G   +++A  VV ++++ TR GS++ WV
Sbjct: 949  FHLTAHPLDSYGLLLRRLGAVRATALEAAAQAGLTRVKIAGCVVDRKERPTRTGSKMAWV 1008

Query: 1019 TFSEPAKEYEANFF 1032
              S+ +   E   F
Sbjct: 1009 RLSDSSGGCEVTLF 1022


>gi|209545459|ref|YP_002277688.1| DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus
            PAl 5]
 gi|209533136|gb|ACI53073.1| DNA polymerase III, alpha subunit [Gluconacetobacter diazotrophicus
            PAl 5]
          Length = 1142

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1034 (47%), Positives = 661/1034 (63%), Gaps = 29/1034 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS+YSL +GA+ +  I       + PA+AITDT NLF ALEFSQ     G+QPI
Sbjct: 6    FVHLRVHSAYSLSQGAIRIPEIASLAQDMRMPAVAITDTGNLFGALEFSQYCSGKGVQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGCQ+ +  +++       K   P  P +VLL     G   L  L S+ +L     +   
Sbjct: 66   IGCQVGLPPRND-------KPGAPAEP-VVLLAQDETGLMNLQYLSSQGFLTGDTAEPT- 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L  L E   EGLI+LTGG+ GP+ R           + L      FGDRL V L RH 
Sbjct: 117  VTLDVLCE-RAEGLILLTGGTRGPLFRMLADGQQDEVAQWLERLHAAFGDRLAVELHRHG 175

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               ++  E  ++ LA    LPLVATN   F   E YEAHD L+ +A    ++++DR RVT
Sbjct: 176  LPVEKAVEPGMIALADRMGLPLVATNECFFPRPEMYEAHDALLCIAQGRTMAERDRWRVT 235

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--KEE 307
            P+H+ K  + M  +F+DLPEA +NT+ IARRC+  ++   P+LP      C  +Q    E
Sbjct: 236  PEHWFKPPAMMRDLFADLPEACDNTLAIARRCAVRVETRKPLLP-----VCPKVQPGATE 290

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E  LR  A  GL  RLA+  +      Q YR RL FEL++IA+M F GYF+IVADFIQWA
Sbjct: 291  EQTLRAMAEDGLARRLARMDMDDATR-QVYRDRLTFELDIIAKMGFPGYFMIVADFIQWA 349

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K ++IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQDRR
Sbjct: 350  KAHDIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQDRR 409

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVIRYV+ +YG +RVAQIITFG LQA+AA+RDVGR L +P+  V+++ +LIPN+PA PV
Sbjct: 410  DEVIRYVRGEYGPDRVAQIITFGKLQARAAVRDVGRVLGLPFGMVNKVAELIPNNPAKPV 469

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L QAI  + R +E R  D ++ RL+EI+ +LEGLYRHASTHAAG+VIGDR L +LVP+Y
Sbjct: 470  TLKQAIDGEPRLQEMRDTDEAIRRLMEIALQLEGLYRHASTHAAGVVIGDRQLVELVPLY 529

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            RD +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+LQ++  FL    V VDL+ +P DD 
Sbjct: 530  RDPKSDMLVTQYNMKFVEQAGLVKFDFLGLTTLTILQRACQFLKGLDVTVDLTTLPLDDA 589

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             TY +L    T G+FQ E +GMR  L+ M+P  +ED+IA V+LYRPGP+ NI  Y  RK+
Sbjct: 590  PTYEMLARGDTGGVFQFEGAGMRDVLKQMRPTRLEDLIAAVALYRPGPMANIPDYCRRKH 649

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G E     H  I  +L+ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+ EMD
Sbjct: 650  G-EAWEPPHEEIRSILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIRAEMD 708

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            KQ+E F  GA   GI    A  +F+L+AKFADYGFNKSHAAAYA++SYQTAWMK ++PV 
Sbjct: 709  KQREIFTEGAVGRGIDPEKAAEVFDLMAKFADYGFNKSHAAAYALVSYQTAWMKANHPVP 768

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR--IYYSLAA 841
            FLAA M+L  +  +K+    Q+A +  I ++PP +N    DF V    D R  I Y+LAA
Sbjct: 769  FLAACMSLAREKTDKLAALRQEAERLGIPVLPPDINASGPDFTVERLADGRLGIRYALAA 828

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +K VG      ++ +  D+PF  L D  +RVD ++LN+  +E+L  AGA D    +R  +
Sbjct: 829  VKKVGFAAMEALVASRGDRPFADLSDLAARVDPRQLNKMQIENLAKAGAFDTVVPNRALV 888

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSSVRFENEQRVLG 960
              + + + + A    +   +    +F     T + + + L   +      R   E   +G
Sbjct: 889  AAAAETVLRRANTQAQEAASGQIGLFGGGGPTPAPEPLRLPDVTDWPEFERLGMEAEAIG 948

Query: 961  FYFSGHPLDVYKPILRKMG-IKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            F+ + HPLD Y  +LR++G ++      A   G   +++A  VV ++++ TR GS++ WV
Sbjct: 949  FHLTAHPLDSYGLLLRRLGAVRATALEAAAQAGLTRVKIAGCVVDRKERPTRTGSKMAWV 1008

Query: 1019 TFSEPAKEYEANFF 1032
              S+ +   E   F
Sbjct: 1009 RLSDSSGGCEVTLF 1022


>gi|73666820|ref|YP_302836.1| DNA polymerase III alpha subunit [Ehrlichia canis str. Jake]
 gi|72393961|gb|AAZ68238.1| DNA polymerase III, alpha subunit [Ehrlichia canis str. Jake]
          Length = 1123

 Score =  908 bits (2346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1040 (46%), Positives = 681/1040 (65%), Gaps = 60/1040 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL+ HS YSLL G + + ++++       PA+A+TD+ NLF +LEFS  A  +GI
Sbjct: 2    SQIFVHLRSHSDYSLLHGMVKIESLVNLCVQHNMPALALTDSGNLFGSLEFSDCASNSGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            QPIIGC        N+ ++  G      +  ++LLV    GY  ++ LVS  +  DQ  +
Sbjct: 62   QPIIGC--------NIMISYNGDN----IGELILLVKNQVGYSNIVNLVSNSFRNDQSGK 109

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKKLFGDRLYVN 185
              RI L+ L  +  +G+I+LTGG  G + +    N     + +K LL FK      LYV 
Sbjct: 110  INRIDLNTLISL-KDGIIVLTGGHDGFLAQLLLGNVIDYGIIDKLLLAFKG----NLYVE 164

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQRH    ++  E  +++ AY  ++PLVATN+ LF   ED+ AHDVL  ++    ++Q+D
Sbjct: 165  LQRHNIEEEKLIERTLIKFAYEKDVPLVATNDILFARREDFLAHDVLSCISDGNYIAQED 224

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R   T +HY K+ +EM  +F D+PEA+ NTV IA+RCSF+ ++  P+LP F    C    
Sbjct: 225  RKMFTEEHYFKSSNEMHELFVDIPEAISNTVLIAQRCSFMPEIRKPMLPHF---PCSS-G 280

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + E  EL ++A+ GL  RL    ++K      Y +RL +EL++I  M ++GYFLIV+DFI
Sbjct: 281  RNESQELISQAIDGLNSRLKDSNLSKE-QTSKYYERLHYELDIIISMDYAGYFLIVSDFI 339

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             W+K+N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ
Sbjct: 340  CWSKRNDIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQ 399

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + RD VI YV+ KYG+  VA IITFG LQAKA LRDVGR +QMPY QVDR+CK+IP++P 
Sbjct: 400  EGRDHVIEYVRKKYGY--VAHIITFGKLQAKAVLRDVGRVMQMPYFQVDRICKMIPHNPV 457

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             PV+L +AI  D   ++ R  D +V +LLEIS KLEGLYRH S HAAGIVI DR L +L+
Sbjct: 458  RPVTLSEAIEMDKNLQKERDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRRLEELL 517

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+Y D  S LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ +    +   G  VD+S IP 
Sbjct: 518  PLYYDNVSFLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICHLVNNGGQNVDISRIPL 577

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D +TY +L+   ++G+FQLESSGMR+ +  ++PD I DIIAL+SLYRPGP+DNI +Y  
Sbjct: 578  NDKKTYEMLSAGDSVGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNISIYIA 637

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G EK   IHP+++ +LKET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKE
Sbjct: 638  RKHGFEKPDYIHPILEGVLKETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKE 697

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMD Q+  FISGA  NGI +  A  IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y
Sbjct: 698  EMDNQRRAFISGAINNGIEEEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANY 757

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAI 842
             +EF  ASM L++ + +K++  C  A+   I+I+PP +NT  V F + G + I Y+L A+
Sbjct: 758  TLEFFTASMNLDITDKDKLEMLCHQAKLHGIKILPPDINTSKVFFTIEGSSSIRYALGAL 817

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            K VG  +A+ I++   D  +  + DF  RV +K +++R+LES++ AG LD    +R QL 
Sbjct: 818  KNVGQHSAKEIVD---DIAYKDIWDFIDRVSTKCVHKRILESIIKAGVLDSIHSNRKQLF 874

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +S   +  +   +E N+ N + N F      AH K + +D  T E+        + +NE 
Sbjct: 875  ES---VFLFLDIIEYNKYNANFNQFSLFTDRAHYKLSETDDWTKEE--------KLDNEF 923

Query: 957  RVLGFYFSGHPLDVYKPILRKM--GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
              +GFY + HP++ YK +L K+  G   Y++  A     N R+  ++ S    K R  SR
Sbjct: 924  SSIGFYLNHHPMENYKCLLEKLNIGFINYDDRSAY----NNRIVGIISS---VKVRSASR 976

Query: 1015 --IGWVTFSEPAKEYEANFF 1032
                 VT S+P   +E  F+
Sbjct: 977  DKFAVVTLSDPYNIHEIAFY 996


>gi|58038565|ref|YP_190529.1| DNA polymerase III subunit alpha [Gluconobacter oxydans 621H]
 gi|58000979|gb|AAW59873.1| DNA polymerase III alpha subunit [Gluconobacter oxydans 621H]
          Length = 1140

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/1034 (46%), Positives = 657/1034 (63%), Gaps = 31/1034 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS+YSL +GA+ +  ++   A +  PA+A+TD+ NLF ALEFS    + G+QPI
Sbjct: 6    FVHLRNHSAYSLSQGAIRIPELVSLAAKNGMPAVALTDSGNLFGALEFSLYCRSNGVQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GCQ+ +      + T  G    P    +V+L    EG   L +++S    L+       
Sbjct: 66   VGCQISLPP----RSTKPGAMSEP----LVVLARNEEGLANL-QILSSEGFLNGDPADPS 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            + + +L +    GL +LTGG+ GPI++         A+  L   ++ F   + V L R  
Sbjct: 117  VAVDFLCQHAA-GLFLLTGGNRGPINKLILEEQKSEAQALLSRLEEAFRGNIAVELNRFG 175

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               ++  ES ++ +A   ++PLVATN   F   E +EAHD L+ +A    ++++DR  V+
Sbjct: 176  EAGEQEVESVLIPMADQMDIPLVATNECFFPKPEMHEAHDALLCIAQGRTIAEEDRWHVS 235

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK--EE 307
            P  + K  +EM ++F DLPEA +NT+ IA++C+       P+LP      C  +++   E
Sbjct: 236  PQAWFKTPAEMRAVFHDLPEACDNTLIIAQKCAVAACTRKPLLPI-----CPKVREGSTE 290

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E  LR  A  GLE RL   AI  G   +  Y +RL  EL++IARM F GYFLIVADFIQW
Sbjct: 291  EETLRAMAWEGLEKRL--DAINAGEEKRKLYSERLQVELDIIARMGFPGYFLIVADFIQW 348

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK ++IPVGPGRGSGAGS+ AYALTITDIDP+ F LLFERFLNP+R+SMPDFDIDFCQDR
Sbjct: 349  AKAHDIPVGPGRGSGAGSLVAYALTITDIDPIPFGLLFERFLNPERVSMPDFDIDFCQDR 408

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVIRYV+ +YG  RVAQIITFG LQAKAA+RDVGR L +PY  V+R+ +LIPN+PA P
Sbjct: 409  RDEVIRYVREEYGGSRVAQIITFGKLQAKAAVRDVGRVLGLPYGMVNRVAELIPNNPAKP 468

Query: 487  VSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            VSL  AI  + R +E R +D S+ RL+EI+ +LEGLYRHASTHAAG+VIGDR L +LVP+
Sbjct: 469  VSLSDAIEGEPRLQEMRDSDESLKRLMEIALQLEGLYRHASTHAAGVVIGDRELVELVPL 528

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+L++ LDFL ++G+ VDLS IP DD
Sbjct: 529  YRDPKSDMLVTQYNMKYVEQAGLVKFDFLGLTTLTILKRGLDFLKEQGITVDLSRIPLDD 588

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T+ +L    T G+FQ E +GMR  L+ M    +ED+IA VSLYRPGP+ NI  Y  RK
Sbjct: 589  AKTFEMLAKGDTAGVFQFEGAGMRDMLKQMAASRLEDLIAGVSLYRPGPMANIPDYCRRK 648

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G E     H  I  +L+ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI  EM
Sbjct: 649  HG-EPWEPPHEEIRDILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIAAEM 707

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +KQ+  F  GA+  GI +  AV +F+L+A+FADYGFNKSHAAAYA++SYQTAWMK ++PV
Sbjct: 708  EKQRAIFTEGATARGIPQEKAVEVFDLMARFADYGFNKSHAAAYALVSYQTAWMKANHPV 767

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLA 840
             FLA  M+L  +  +K+   CQ+AR+ NI ++P  +N    DF +     G   I Y+L+
Sbjct: 768  AFLAGCMSLAREKTDKLAALCQEARRMNIPVLPVDINKSLADFSIETLEDGRQGIRYALS 827

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIK VG    + ++    D+PF  L DF  R D K LN+  LESL  AGA D     R  
Sbjct: 828  AIKRVGAAAMQSVVACRGDRPFQDLTDFAERCDPKSLNKIQLESLAKAGAFDSLLKERHI 887

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +  S D + + AQ   + +      +F    G   + + L +        R   E   +G
Sbjct: 888  VFSSADILLRRAQARAQEQQMGQAGLFGG-AGQEREILRLNEGRPWPDFERLSLEASAIG 946

Query: 961  FYFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            F+ S HPLD Y+ +LR++G+      E+ A      +++A  VV ++++ TR G ++ WV
Sbjct: 947  FHMSAHPLDAYRSVLRRLGVTPSNALENAAKTGTTRVKIAGCVVDRKERPTRTGKKMAWV 1006

Query: 1019 TFSEPAKEYEANFF 1032
              S+     E   F
Sbjct: 1007 NLSDSGGGCEVTLF 1020


>gi|326404871|ref|YP_004284953.1| DNA polymerase III alpha subunit [Acidiphilium multivorum AIU301]
 gi|325051733|dbj|BAJ82071.1| DNA polymerase III alpha subunit [Acidiphilium multivorum AIU301]
          Length = 1139

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1033 (46%), Positives = 664/1033 (64%), Gaps = 30/1033 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS+YSL EGA+  + I      +  PA+AITDT+NLF ++EFSQ     G+QPI
Sbjct: 6    FVHLRVHSAYSLSEGAIKPDKIATLARDNAMPAVAITDTSNLFGSIEFSQACMGKGVQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            +GCQ+ +            +T  P +P   +VLL   A G+  L +L SR +L  +    
Sbjct: 66   VGCQIGL-----------ARTDLPRLPPDPLVLLAKDATGFANLSKLSSRSFLDTEPGLR 114

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +I L  L++   EGL +LTGG  GP+ R         A + L    + F DRL V L+R
Sbjct: 115  PQISLDTLRD-HHEGLFLLTGGRFGPVGRLLGDGQRPEAARLLAALAETFPDRLAVELER 173

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +R  E  ++ LA    LPLVATN   F +E  +EAHD L+ +A   V+S+ +R R
Sbjct: 174  HDLPTERAVEPGLITLADEAGLPLVATNECFFATETMHEAHDALLCIAEGRVLSEAERRR 233

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            VTP H+ K  +EM   F+DLP+A +NT+ IARRC+       P+LP  I  +  D   E 
Sbjct: 234  VTPHHWFKPAAEMRRRFADLPDACDNTLAIARRCAIAAPTRKPLLP--ICPKVRDGATEA 291

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E  LR  A  GL +RLA         A+ YR+RL  EL +I +M F GYFLIVADFIQWA
Sbjct: 292  ET-LRAMAEEGLALRLAAMNADAATAAK-YRERLALELGIIEQMGFPGYFLIVADFIQWA 349

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K   IPVGPGRGSGAGS+ A+AL ITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQ+RR
Sbjct: 350  KSQGIPVGPGRGSGAGSLAAWALLITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQERR 409

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV+ +YG +RVAQIITFG LQA+AA+RDVGR L +PY QV+++ +++PN+PA P+
Sbjct: 410  DEVIAYVRREYGADRVAQIITFGKLQARAAVRDVGRVLGLPYGQVNKVAEIVPNNPAKPI 469

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             L +A+  + R RE R +D SV RL+EI+ ++EGLYRHASTHAAG+VIGDRPL++LVP+Y
Sbjct: 470  PLAEAVDAEPRLREMRDSDESVKRLIEIAMQVEGLYRHASTHAAGVVIGDRPLNELVPLY 529

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            +D RSD+ +TQ++MK +E+AGL+KFDFLGL TLT++ ++L+FL   G  VD++ IP DD 
Sbjct: 530  KDPRSDMLITQYSMKHVEQAGLVKFDFLGLTTLTIISRALNFLDGLGTPVDIAKIPLDDA 589

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L+     G+FQ E+ G R  L  M+PD  ED+IA V+L RPGP+ NI  Y  RK+
Sbjct: 590  KTYEMLSRAEAGGVFQFETQGFRDVLRQMRPDRFEDLIAAVALNRPGPMANIPAYCARKH 649

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G E   S  P I  +L ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+ EM+
Sbjct: 650  G-ESWESPDPSIHEILSETYGIMVYQEQVMQIAQKMAGYSLGAADLLRRAMGKKIRAEME 708

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q++ F+ GA   G ++  AV +F+L+AKFADYGFNKSHAAAYA++SYQTAW++ ++P  
Sbjct: 709  AQRKIFVEGAVARGTAEAKAVEVFDLMAKFADYGFNKSHAAAYALVSYQTAWLRANHPAA 768

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAA 841
            F+AASM+L   N EK+    QDA +  I ++PP +N    DF V     G   I Y+LAA
Sbjct: 769  FIAASMSLSQANHEKLAALKQDAVRIGIPVLPPDINASAADFTVERQADGTLAIRYALAA 828

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IK VG    + ++ A A++PF  L DF +RVD + LN+  +E L  AGA D    +R ++
Sbjct: 829  IKRVGAGAMQDVVRARANRPFADLADFAARVDPRALNKAQIEQLARAGAFDRIDPNRARV 888

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
                + + + AQ   ++R +   N+F        + + L       +  R   E   +G+
Sbjct: 889  AAGAELLVRRAQAEAESRASGQINLFG--DAAAPEPLPLPDVPDWPAFERLSFEAEAVGY 946

Query: 962  YFSGHPLDVYKPILRKMGI--KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            + + HPLD Y  +LR++G+      E+ A      ++LA  VV ++++ TR GSR+ WV 
Sbjct: 947  HLTAHPLDAYDTVLRRLGVVPSNLIEARAKAGIGRVKLAGAVVGRKERTTRTGSRMAWVM 1006

Query: 1020 FSEPAKEYEANFF 1032
             S+ A  +E   F
Sbjct: 1007 LSDQAGGFEVTLF 1019


>gi|296116516|ref|ZP_06835126.1| DNA polymerase III subunit alpha [Gluconacetobacter hansenii ATCC
            23769]
 gi|295976728|gb|EFG83496.1| DNA polymerase III subunit alpha [Gluconacetobacter hansenii ATCC
            23769]
          Length = 1142

 Score =  905 bits (2338), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/1035 (45%), Positives = 666/1035 (64%), Gaps = 29/1035 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F+HL+VHS+YSL +GA+ +  I+      + P +AITDT N+F ALEFSQ     GIQP
Sbjct: 5    NFIHLRVHSAYSLSQGAIRVPEIISLAHEMRMPGVAITDTGNMFGALEFSQYCSKKGIQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGCQ+ +  + +       K   P  P +VLL     G   L  L S  +L  +  +  
Sbjct: 65   IIGCQIALPARCD-------KPGSPAEP-MVLLARNETGLMNLQYLSSAGFLQHETDEPT 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + L  L +   +GL ++TGG+ GP+ R         A + L      FG  + V L RH
Sbjct: 117  -VPLDILCD-RADGLFLMTGGTRGPLFRMLAEGLEADAARLLARLHAAFGRYMAVELHRH 174

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +R  E  ++ LA    +PLVATN   F   + YEAHD L+ +A    ++++DR RV
Sbjct: 175  GLSVERAVEPGMIALADRAGIPLVATNECFFPRPDMYEAHDALLCIAQGRTMAEQDRWRV 234

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--KE 306
            TP+H+ K    M  +F+DLPEA +NT+EIAR C+  ++   P+LP      C  +     
Sbjct: 235  TPEHWFKPPHMMRELFADLPEACDNTLEIARLCAIKVETRKPLLP-----VCPKVAPGAT 289

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E+  LR+ A  GLE RLA+  I +    Q Y +RL FEL++IARM F GYF+IVADFIQW
Sbjct: 290  EDETLRSMARDGLERRLARMDIDEQTR-QTYEERLAFELDIIARMGFPGYFMIVADFIQW 348

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK ++IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQDR
Sbjct: 349  AKAHDIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQDR 408

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVIRYV+ +YG +RVAQIITFG LQA+AA+RDVGR L + +  V+++ +LIPN+PA P
Sbjct: 409  RDEVIRYVRQEYGPDRVAQIITFGKLQARAAVRDVGRVLGLSFGMVNKVAELIPNNPAKP 468

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+L QAI  + R +E R  D ++ RL+EI+ +LEGL+RHASTHAAG+VIGDR L +LVP+
Sbjct: 469  VTLKQAIDGEPRLQEMRDNDETLRRLMEIALQLEGLFRHASTHAAGVVIGDRELVELVPL 528

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+LQ++  FL + GV VDL+ +P DD
Sbjct: 529  YRDPKSDMLVTQYNMKFVEQAGLVKFDFLGLTTLTILQRAAQFLERLGVTVDLAALPLDD 588

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              TY +L    T G+FQ E +GMR  L+ M+P  +ED+IA V+LYRPGP+ NI  Y  RK
Sbjct: 589  ALTYDMLARGDTGGVFQFEGAGMRDVLKQMRPTRLEDLIAAVALYRPGPMANIPDYCRRK 648

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G E     H  I  +L ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+ EM
Sbjct: 649  HG-EAWEPPHEEIRDILSETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIRAEM 707

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+Q+  F  GA+K GI    AV +F+L+AKFADYGFNKSHAAAYA++SYQTAWMK ++PV
Sbjct: 708  DQQRVIFTEGATKRGIEHDKAVEVFDLMAKFADYGFNKSHAAAYALVSYQTAWMKANHPV 767

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLA 840
             FLAA M+L  +  EK+    Q+A +  I+++PP +N    DF V     G+  I Y+LA
Sbjct: 768  AFLAACMSLAREKTEKLAALRQEAERLGIKVLPPDINASDADFTVEKLPDGEYGIRYALA 827

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            A+K VG +  + ++    ++PF  + D  +R+D + +N+  LE+L  AGA D    +R Q
Sbjct: 828  AVKKVGLSAMQALVAVRGERPFADMTDIAARIDPRNVNKMQLENLARAGAFDTILPNRAQ 887

Query: 901  LLQSLDNIQKYAQ-WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
               +++ + + AQ   ++  + +        + T  + + L          R   E   +
Sbjct: 888  ACAAVETVLRRAQSHAQEAASGQIGLFGGGGEATAQETLRLPSVPDWPEFDRLNMEADAI 947

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            GF+ + HPLD Y P++R++G+      E+ A      +++A  VV ++++ TR G+++ W
Sbjct: 948  GFHLTAHPLDSYGPLMRRLGVVKSTGLETAAAAGITRVKIAGCVVDRKERPTRTGNKMAW 1007

Query: 1018 VTFSEPAKEYEANFF 1032
            V  S+ +   E  FF
Sbjct: 1008 VRLSDASGGCEVTFF 1022


>gi|148261382|ref|YP_001235509.1| DNA polymerase III subunit alpha [Acidiphilium cryptum JF-5]
 gi|146403063|gb|ABQ31590.1| DNA polymerase III, alpha subunit [Acidiphilium cryptum JF-5]
          Length = 1139

 Score =  905 bits (2338), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1033 (46%), Positives = 663/1033 (64%), Gaps = 30/1033 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS+YSL EGA+  + I      +  PA+AITDT+NLF ++EFSQ     G+QPI
Sbjct: 6    FVHLRVHSAYSLSEGAIKPDKIATLARDNAMPAVAITDTSNLFGSIEFSQACMGKGVQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            +GCQ+ +            +T  P +P   +VLL   A G+  L +L SR +L  +    
Sbjct: 66   VGCQIGL-----------ARTDLPRLPPDPLVLLAKDATGFANLSKLSSRSFLDTEPGLR 114

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +I L  L++   EGL +LTGG  GP+ R         A + L    + F DRL V L+R
Sbjct: 115  PQISLDTLRD-HHEGLFLLTGGRFGPVGRLLGDGQRPEAARLLAALAETFPDRLAVELER 173

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +R  E  ++ LA    LPLVATN   F +E  +EAHD L+ +A   V+S+ +R R
Sbjct: 174  HDLPTERAVEPGLITLADEAGLPLVATNECFFATETMHEAHDALLCIAEGRVLSEAERRR 233

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            VTP H+ K  +EM   F+DLP+A +NT+ IARRC+       P+LP  I  +  D   E 
Sbjct: 234  VTPHHWFKPAAEMRRRFADLPDACDNTLAIARRCAIAAPTRKPLLP--ICPKVRDGATEA 291

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E  LR  A  GL +RLA         A+ YR+RL  EL +I +M F GYFLIVADFIQWA
Sbjct: 292  ET-LRAMAEEGLALRLAAMNADAATAAK-YRERLALELGIIEQMGFPGYFLIVADFIQWA 349

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K   IPVGPGRGSGAGS+ A+AL ITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQ+RR
Sbjct: 350  KSQGIPVGPGRGSGAGSLAAWALLITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQERR 409

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV+ +YG +RVAQIITFG LQA+AA+RDVGR L +PY QV+++ +++PN+PA P+
Sbjct: 410  DEVIAYVRREYGADRVAQIITFGKLQARAAVRDVGRVLGLPYGQVNKVAEIVPNNPAKPI 469

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             L +A+  + R RE R +D SV RL+EI+ ++EGLYRHASTHAAG+VIGDRPL +LVP+Y
Sbjct: 470  PLAEAVDAEPRLREMRDSDESVKRLIEIAMQVEGLYRHASTHAAGVVIGDRPLDELVPLY 529

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            +D RSD+ +TQ++MK +E+AGL+KFDFLGL TLT++ ++L+FL   G  VD++ IP DD 
Sbjct: 530  KDPRSDMLITQYSMKHVEQAGLVKFDFLGLTTLTIISRALNFLDGLGTPVDIAKIPLDDA 589

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L+     G+FQ E+ G R  L  M+PD  ED+IA V+L RPGP+ NI  Y  RK+
Sbjct: 590  KTYEMLSRAEAGGVFQFETQGFRDVLRQMRPDRFEDLIAAVALNRPGPMANIPAYCARKH 649

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G E   S  P I  +L ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+ EM+
Sbjct: 650  G-ESWESPDPSIHEILSETYGIMVYQEQVMQIAQKMAGYSLGAADLLRRAMGKKIRAEME 708

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q++ F+ GA   G ++  AV +F+L+AKFADYGFNKSHAAAYA++SYQTAW++ ++P  
Sbjct: 709  AQRKIFVEGAVARGTAEAKAVEVFDLMAKFADYGFNKSHAAAYALVSYQTAWLRANHPAA 768

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAA 841
            F+AASM+L   N EK+    QDA +  I ++PP +N    DF V     G   I Y+LAA
Sbjct: 769  FIAASMSLSQANHEKLAALKQDAVRIGIPVLPPDINASAADFTVERQADGTLAIRYALAA 828

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IK VG    + ++ A A++PF  L DF +RVD + LN+  +E L  AGA D    +R ++
Sbjct: 829  IKRVGAGAMQDVVRARANRPFADLADFAARVDPRALNKAQIEQLARAGAFDRIDPNRARV 888

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
                + + + AQ   ++R +   N+F        + + L       +  R   E   +G+
Sbjct: 889  AAGAELLVRRAQAEAESRASGQINLFG--DAAAPEPLPLPDVPDWPAFERLSFEAEAVGY 946

Query: 962  YFSGHPLDVYKPILRKMGI--KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            + + HPLD Y  +LR++G+      E+ A      ++LA  VV ++++ TR GSR+ WV 
Sbjct: 947  HLTAHPLDAYDTVLRRLGVVPSNLIEARAKAGIGRVKLAGAVVGRKERTTRTGSRMAWVM 1006

Query: 1020 FSEPAKEYEANFF 1032
             S+ A  +E   F
Sbjct: 1007 LSDQAGGFEVTLF 1019


>gi|58616909|ref|YP_196108.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str. Gardel]
 gi|58416521|emb|CAI27634.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str. Gardel]
          Length = 1122

 Score =  900 bits (2327), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/1032 (46%), Positives = 673/1032 (65%), Gaps = 51/1032 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLL G + ++ +++       PA+A+TD+ NLF +LEFS  A  AG+QPI
Sbjct: 8    FVHLRSHSDYSLLRGMIKIDTLVNLCVQYNMPAVALTDSGNLFGSLEFSDHASNAGVQPI 67

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC + +    N             +  +VLL     GY  +I+LVS  +  +Q  +  R
Sbjct: 68   IGCNIMVHYHGN------------NIGELVLLAKNQAGYNNIIDLVSNSFKGNQSGKLNR 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKKLFGDRLYVNLQR 188
            I L+ L ++  +G+I+LTGG  G + +    +     V  K LL F+    + LYV LQR
Sbjct: 116  IDLNRLIQL-KDGIIILTGGYEGLLAQLLLRDVIHYNVVNKLLLAFE----NNLYVELQR 170

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +   E+ +++ AY   LPLVATN+ LF+ +ED+ A+DVL  ++    V+Q+DR  
Sbjct: 171  HGIKEESIVETTLIKFAYEKNLPLVATNDVLFVKKEDFPAYDVLSCISDGHYVAQEDRKM 230

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T +HY K+  EM S+F D+PEA+ NT+ IA+RCSF+ ++  PILP F    C    K E
Sbjct: 231  FTAEHYFKSSQEMCSLFHDIPEAIYNTLLIAQRCSFMPEIRKPILPHF---PCSS-GKNE 286

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL  +A+AGLE RL    +++    + Y +RL +EL+VI  M ++GYFLIV+DFI W+
Sbjct: 287  SQELITQALAGLEKRLKLKNLSEEDMVK-YHERLLYELDVIISMDYAGYFLIVSDFICWS 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++R
Sbjct: 346  KRNGIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQEKR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV+ KYG+  VA IITFG LQA+A LRDVGR +Q+PY QVDR+CK+IP++P  PV
Sbjct: 406  DLVIEYVRKKYGY--VAHIITFGKLQARAVLRDVGRVMQIPYFQVDRICKMIPHNPVRPV 463

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L +AI  D   ++ R  D +V +LLEIS KLEGLYRH S HAAGIVI DR L +LVP+Y
Sbjct: 464  TLSEAIGMDKNLQKERDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRKLEELVPLY 523

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  + LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ +    + +RG  +D+  IP DD 
Sbjct: 524  YDSTAFLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICQLVRERGYVIDIVSIPLDDR 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L++  ++G+FQLESSGMR+ +  ++PD I DIIAL+SLYRPGP+DNI VY  RK+
Sbjct: 584  KTYEMLSSGDSIGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNIPVYIARKH 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G EK   IH +++ +LKET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKEEMD
Sbjct: 644  GLEKPDYIHSILEGVLKETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKEEMD 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+  FI+GA  NGI++  A  IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y +E
Sbjct: 704  NQRRTFINGAVNNGINQEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANYTIE 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  ASM L++ + +K++ FC  A+   I I+PP +N   V F +  + I Y+L A+K VG
Sbjct: 764  FFTASMNLDITDKDKLEMFCNQAKLHGISILPPDINYSKVFFVIEGSSIRYALGALKNVG 823

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  ++   +D  ++ + DF  R+ +K +++R+LE+++ AG LD    +R QL +S  
Sbjct: 824  QHAAHELI---SDVKYNDIWDFVDRISTKSVHKRMLENIIKAGVLDSIHSNRKQLFES-- 878

Query: 907  NIQKYAQWVEKNRTNKHENIFA------HEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             +  +   +E N+ N   N  +      H K   +D  T E+        +  NE   +G
Sbjct: 879  -VILFLDIIEYNKYNSSFNQISLFNDKNHYKLVETDDWTKEE--------KLYNEFSSIG 929

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY + HP+  Y+ +L K+ I        +   N +   A V+S  + ++    +   VT 
Sbjct: 930  FYLNNHPMQSYQDLLDKLNIGFINYDNKSAYNNKV---AGVISNIRVRSANRDKFALVTL 986

Query: 1021 SEPAKEYEANFF 1032
            S+P   +E  F+
Sbjct: 987  SDPNNIHEIAFY 998


>gi|56416564|ref|YP_153638.1| DNA polymerase III alpha subunit [Anaplasma marginale str. St.
            Maries]
 gi|56387796|gb|AAV86383.1| DNA polymerase III alpha subunit [Anaplasma marginale str. St.
            Maries]
          Length = 1127

 Score =  900 bits (2325), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/1026 (46%), Positives = 673/1026 (65%), Gaps = 35/1026 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLLEG + + +++        PA+A+TD+ NLF +LEFS  A + G+QPI
Sbjct: 6    FVHLRTHSDYSLLEGMIKIESLVAMCVDQNMPAVALTDSGNLFGSLEFSDCAASFGVQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC        N+ + + G+     + +I++L  + EG+  LI LVS  +  +Q  ++ R
Sbjct: 66   VGC--------NIMVHDAGED----LGNILMLTKSHEGFVNLISLVSNGFKENQSGKANR 113

Query: 131  ICL-SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            + + S L++     L+         + RA    S+ +     +   + FG+ +YV LQRH
Sbjct: 114  VDVNSLLRQGSGLLLLTGG--HDDILARALLGKSAGMGAINAIL--ETFGNDVYVELQRH 169

Query: 190  RGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             G +  +E +  ++  AY   +PLVATN+  F+   D++AHDVL  ++  T + Q+ R R
Sbjct: 170  -GLESQKEVEGLLIGFAYERNIPLVATNDVFFVRRGDFQAHDVLSCISDGTYIVQEGRRR 228

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +T +HY K   EM  +FSD+PEA+ NT  IARRC+FI ++  P LP F    C D + E 
Sbjct: 229  LTEEHYFKTSKEMFELFSDIPEAVRNTPMIARRCAFIAEIRKPSLPHF---PCSDGRTEA 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E EL   A  GLE RL    I  G   + Y  RL +EL ++  M +SGYFLIVADFI W+
Sbjct: 286  E-ELTECAKTGLEARLRAKNI-DGDKKEQYHNRLQYELGIVISMDYSGYFLIVADFICWS 343

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            KKN+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNP+R+SMPDFDIDFCQ++R
Sbjct: 344  KKNDIMVGPGRGSGAGSLIAWSLGITDLDPIEFGLIFERFLNPERVSMPDFDIDFCQEKR 403

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D+VI YV+ KYG+  VA IITFG LQA+A LRDVGR +Q+PY+Q+D++CK+IP+DP  PV
Sbjct: 404  DKVIEYVREKYGY--VAHIITFGKLQARAVLRDVGRVMQIPYAQIDKICKMIPHDPVSPV 461

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L +AI  D   +  + +D +V +L EIS KLEGLYRHAS HAAGIVI D+PL   VP+Y
Sbjct: 462  TLSEAIEMDQNLKREKESDNTVAKLFEISLKLEGLYRHASVHAAGIVICDKPLEDFVPLY 521

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D    LP+TQ+NMK++EKAGL+KFDFLGL+TLT+L +    +  RG  ++LS +P DD 
Sbjct: 522  YDQSCSLPITQYNMKYVEKAGLVKFDFLGLRTLTVLDQVRSLIQDRGGSIELSELPLDDG 581

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L+T  ++G+FQLES+GMR+A+  ++PD I+DIIAL+SLYRPGP++NI +Y  RK+
Sbjct: 582  KTYEMLSTGNSVGVFQLESAGMREAISKLRPDGIQDIIALISLYRPGPMNNIAIYIARKH 641

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G EK   IHP+++ +LKET GVIIYQEQVM+IA++L+GYSL  AD+LRRAMGKKIKEEMD
Sbjct: 642  GLEKPDYIHPMLEGVLKETFGVIIYQEQVMEIARILAGYSLGGADLLRRAMGKKIKEEMD 701

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            KQ++ F++GA KNGI +  A  IF+L+AKFA YGFNKSHAAAYA+IS+QTA++K +Y  E
Sbjct: 702  KQRQDFVNGAIKNGIDRGKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYLKANYTKE 761

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  ASM L++ + +K++  CQ AR   +Q++PP VN+  V F +  + I Y L A+K VG
Sbjct: 762  FFTASMNLDIGDKDKLELLCQQARACGVQVLPPDVNSSGVLFTISGDAIKYGLGALKNVG 821

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
             T AR ++   A K +  + DF   + +K   +RV+ESL+ +GALD    +R QL +SL 
Sbjct: 822  QTAAREVV-PEAGKKYSDIWDFARNMRAKWACKRVMESLIKSGALDSIHPNRRQLFESLG 880

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             I         +  +K  N+F   +G     + +E +S E    + E+E   LGFY   H
Sbjct: 881  TILDVIDDTRNSAESKQFNLFGITEG--HKLLEVEDWSEEE---KIEHEFSTLGFYLRYH 935

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            PL  Y+ ILR +G+K   E   +   + ++ +A V+S  + ++    R   V  S+P   
Sbjct: 936  PLAKYEGILRGLGVKFVSECQDSSE-SGVKKSAGVISSVRIRSANKERFAVVRISDPYGV 994

Query: 1027 YEANFF 1032
             +  F+
Sbjct: 995  NDVAFY 1000


>gi|222474932|ref|YP_002563347.1| DNA polymerase III, alpha subunit (dnaE) [Anaplasma marginale str.
            Florida]
 gi|255002906|ref|ZP_05277870.1| DNA polymerase III, alpha subunit (dnaE) [Anaplasma marginale str.
            Puerto Rico]
 gi|222419068|gb|ACM49091.1| DNA polymerase III, alpha subunit (dnaE) [Anaplasma marginale str.
            Florida]
          Length = 1127

 Score =  900 bits (2325), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/1026 (46%), Positives = 673/1026 (65%), Gaps = 35/1026 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLLEG + + +++        PA+A+TD+ NLF +LEFS  A + G+QPI
Sbjct: 6    FVHLRTHSDYSLLEGMIKIESLVAMCVDQNMPAVALTDSGNLFGSLEFSDCAASFGVQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC        N+ + + G+     + +I++L  + EG+  LI LVS  +  +Q  ++ R
Sbjct: 66   VGC--------NIMVHDAGED----LGNILMLTKSHEGFVNLISLVSNGFKENQSGKANR 113

Query: 131  ICL-SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            + + S L++     L+         + RA    S+ +     +   + FG+ +YV LQRH
Sbjct: 114  VDVNSLLRQGSGLLLLTGG--HDDILARALLGKSAGMGAINAIL--ETFGNDVYVELQRH 169

Query: 190  RGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             G +  +E +  ++  AY   +PLVATN+  F+   D++AHDVL  ++  T + Q+ R R
Sbjct: 170  -GLESQKEVEGLLIGFAYERNIPLVATNDVFFVRRGDFQAHDVLSCISDGTYIVQEGRRR 228

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +T +HY K   EM  +FSD+PEA+ NT  IARRC+FI ++  P LP F    C   + E 
Sbjct: 229  LTEEHYFKTSKEMFELFSDIPEAVRNTPMIARRCAFIAEIRKPSLPHF---PCSGGRTEA 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E EL   A  GLE RL    I  G   + Y  RL +EL ++  M +SGYFLIVADFI W+
Sbjct: 286  E-ELTECAKTGLEARLRAKNI-DGDKKEQYHNRLQYELGIVISMDYSGYFLIVADFICWS 343

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            KKN+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNP+R+SMPDFDIDFCQ++R
Sbjct: 344  KKNDIMVGPGRGSGAGSLIAWSLGITDLDPIEFGLIFERFLNPERVSMPDFDIDFCQEKR 403

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D+VI YV+ KYG+  VA IITFG LQA+A LRDVGR +Q+PY+Q+D++CK+IP+DP  PV
Sbjct: 404  DKVIEYVREKYGY--VAHIITFGKLQARAVLRDVGRVMQIPYAQIDKICKMIPHDPVSPV 461

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L +AI  D   +  + +D +V +L EIS KLEGLYRHAS HAAGIVI D+PL   VP+Y
Sbjct: 462  TLSEAIEMDQNLKREQESDNTVAKLFEISLKLEGLYRHASVHAAGIVICDKPLEDFVPLY 521

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D    LP+TQ+NMK++EKAGL+KFDFLGL+TLT+L +    +  RGV ++LS +P DD 
Sbjct: 522  YDQSCSLPITQYNMKYVEKAGLVKFDFLGLRTLTVLDQVRSLIQDRGVSIELSELPLDDG 581

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L+T  ++G+FQLES+GMR+A+  ++PD I+DIIAL+SLYRPGP++NI +Y  RK+
Sbjct: 582  KTYEMLSTGNSVGVFQLESAGMREAISKLRPDGIQDIIALISLYRPGPMNNIAIYIARKH 641

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G EK   IHP+++ +LKET GVIIYQEQVM+IA++L+GYSL  AD+LRRAMGKKIKEEMD
Sbjct: 642  GLEKPDYIHPMLEGVLKETFGVIIYQEQVMEIARILAGYSLGGADLLRRAMGKKIKEEMD 701

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            KQ++ F++GA KNGI +  A  IF+L+AKFA YGFNKSHAAAYA+IS+QTA++K +Y  E
Sbjct: 702  KQRQDFVNGAIKNGIDRGKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYLKANYTKE 761

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  ASM L++ + +K++  CQ AR   +Q++PP VN+  V F +  + I Y L A+K VG
Sbjct: 762  FFTASMNLDIGDKDKLELLCQQARACGVQVLPPDVNSSGVLFTISGDAIKYGLGALKNVG 821

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
             T AR ++   A K +  + DF   + +K   +RV+ESL+ +GALD    +R QL +SL 
Sbjct: 822  QTAAREVV-PEAGKKYSDIWDFARNMRAKWACKRVMESLIKSGALDSIHPNRRQLFESLG 880

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             I         +  +K  N+F   +G     + +E +S E    + E+E   LGFY   H
Sbjct: 881  TILDVIDDTRNSAESKQFNLFGITEG--HKLLEVEDWSEEE---KIEHEFSTLGFYLRYH 935

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            PL  Y+ ILR +G+K   E   +   + ++ +A V+S  + ++    R   V  S+P   
Sbjct: 936  PLAKYEGILRGLGVKFVSECQDSSE-SGVKKSAGVISSVRIRSANKERFAVVRISDPYGV 994

Query: 1027 YEANFF 1032
             +  F+
Sbjct: 995  NDVAFY 1000


>gi|58578851|ref|YP_197063.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str.
            Welgevonden]
 gi|58417477|emb|CAI26681.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str.
            Welgevonden]
          Length = 1122

 Score =  899 bits (2322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/1032 (45%), Positives = 672/1032 (65%), Gaps = 51/1032 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLL G + ++ +++       PA+A+TD+ NLF +LEFS  A   G+QPI
Sbjct: 8    FVHLRSHSDYSLLRGMIKIDTLVNLCVQYNMPAVALTDSGNLFGSLEFSDHASNVGVQPI 67

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC + +    N             +  +VLL     GY  +I+LVS  +  +Q  +  R
Sbjct: 68   IGCNIMVHYHGN------------NIGELVLLAKDQAGYNNIIDLVSNSFKGNQSGKLNR 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKKLFGDRLYVNLQR 188
            I L+ L ++  +G+I+LTGG  G + +    +     V  K LL F+    + LYV LQR
Sbjct: 116  IDLNRLIQL-KDGIIILTGGYEGLLAQLLLRDVIHYNVVNKLLLAFE----NNLYVELQR 170

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +   E+ +++ AY   LPLVATN+ LF+ +ED+ A+DVL  ++    V+Q+DR  
Sbjct: 171  HGIKEESIVETTLIKFAYEKNLPLVATNDVLFVKKEDFPAYDVLSCISDGHYVAQEDRKM 230

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T +HY K+  EM S+F D+PEA+ NT+ IA+RCSF+ ++  PILP F    C    K E
Sbjct: 231  FTAEHYFKSSQEMCSLFHDIPEAIYNTLLIAQRCSFMPEIRKPILPHF---PCSS-GKNE 286

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL  +A+AGLE RL    +++    + Y +RL +EL+VI  M ++GYFLIV+DFI W+
Sbjct: 287  SQELITQALAGLEKRLKLKNLSEEDMVK-YHERLLYELDVIISMDYAGYFLIVSDFICWS 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++R
Sbjct: 346  KRNGIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQEKR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV+ KYG+  VA IITFG LQA+A LRDVGR +Q+PY QVDR+CK+IP++P  PV
Sbjct: 406  DLVIEYVRKKYGY--VAHIITFGKLQARAVLRDVGRVMQIPYFQVDRICKMIPHNPVRPV 463

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L +AI  D   ++ R  D +V +LLEIS KLEGLYRH S HAAGIVI DR L +LVP+Y
Sbjct: 464  TLSEAIGMDKNLQKERDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRKLEELVPLY 523

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  + LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ +    + +RG  +D+  IP DD 
Sbjct: 524  YDSTAFLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICQLVRERGYVIDIVSIPLDDR 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L++  ++G+FQLESSGMR+ +  ++PD I DIIAL+SLYRPGP+DNI VY  RK+
Sbjct: 584  KTYEMLSSGDSIGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNIPVYIARKH 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G EK   IH +++ +LKET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKEEMD
Sbjct: 644  GLEKPDYIHSILEGVLKETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKEEMD 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+  FI+GA  NGI++  A  IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y +E
Sbjct: 704  NQRRTFINGAVNNGINQEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANYTIE 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  ASM L++ + +K++ FC  A+   I I+PP +N   V F +  + I Y+L A+K VG
Sbjct: 764  FFTASMNLDITDKDKLEMFCNQAKLHGINILPPDINYSKVFFVIEGSSIRYALGALKNVG 823

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  ++   +D  ++ + DF  R+ +K +++R+LE+++ AG LD    +R QL +S  
Sbjct: 824  QHAAHELI---SDVKYNDIWDFVDRISTKSVHKRMLENIIKAGVLDSIHSNRKQLFES-- 878

Query: 907  NIQKYAQWVEKNRTNKHENIFA------HEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             +  +   +E N+ N   N  +      H K   +D  T E+        +  NE   +G
Sbjct: 879  -VILFLDIIEYNKYNSSFNQISLFNDKNHYKLVETDDWTKEE--------KLYNEFSSIG 929

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY + HP+  Y+ +L K+ I        +   N +   A V+S  + ++    +   VT 
Sbjct: 930  FYLNNHPMQSYQDLLDKLNIGFINYDNKSAYNNKV---AGVISNIRVRSANRDKFALVTL 986

Query: 1021 SEPAKEYEANFF 1032
            S+P   +E  F+
Sbjct: 987  SDPNNIHEIAFY 998


>gi|57238919|ref|YP_180055.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str.
            Welgevonden]
 gi|57160998|emb|CAH57904.1| DNA polymerase III, alpha subunit [Ehrlichia ruminantium str.
            Welgevonden]
          Length = 1119

 Score =  898 bits (2320), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/1032 (45%), Positives = 672/1032 (65%), Gaps = 51/1032 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLL G + ++ +++       PA+A+TD+ NLF +LEFS  A   G+QPI
Sbjct: 5    FVHLRSHSDYSLLRGMIKIDTLVNLCVQYNMPAVALTDSGNLFGSLEFSDHASNVGVQPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC + +    N             +  +VLL     GY  +I+LVS  +  +Q  +  R
Sbjct: 65   IGCNIMVHYHGN------------NIGELVLLAKDQAGYNNIIDLVSNSFKGNQSGKLNR 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKKLFGDRLYVNLQR 188
            I L+ L ++  +G+I+LTGG  G + +    +     V  K LL F+    + LYV LQR
Sbjct: 113  IDLNRLIQL-KDGIIILTGGYEGLLAQLLLRDVIHYNVVNKLLLAFE----NNLYVELQR 167

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +   E+ +++ AY   LPLVATN+ LF+ +ED+ A+DVL  ++    V+Q+DR  
Sbjct: 168  HGIKEESIVETTLIKFAYEKNLPLVATNDVLFVKKEDFPAYDVLSCISDGHYVAQEDRKM 227

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T +HY K+  EM S+F D+PEA+ NT+ IA+RCSF+ ++  PILP F    C    K E
Sbjct: 228  FTAEHYFKSSQEMCSLFHDIPEAIYNTLLIAQRCSFMPEIRKPILPHF---PCSS-GKNE 283

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL  +A+AGLE RL    +++    + Y +RL +EL+VI  M ++GYFLIV+DFI W+
Sbjct: 284  SQELITQALAGLEKRLKLKNLSEEDMVK-YHERLLYELDVIISMDYAGYFLIVSDFICWS 342

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++R
Sbjct: 343  KRNGIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQEKR 402

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV+ KYG+  VA IITFG LQA+A LRDVGR +Q+PY QVDR+CK+IP++P  PV
Sbjct: 403  DLVIEYVRKKYGY--VAHIITFGKLQARAVLRDVGRVMQIPYFQVDRICKMIPHNPVRPV 460

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L +AI  D   ++ R  D +V +LLEIS KLEGLYRH S HAAGIVI DR L +LVP+Y
Sbjct: 461  TLSEAIGMDKNLQKERDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRKLEELVPLY 520

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  + LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ +    + +RG  +D+  IP DD 
Sbjct: 521  YDSTAFLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICQLVRERGYVIDIVSIPLDDR 580

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L++  ++G+FQLESSGMR+ +  ++PD I DIIAL+SLYRPGP+DNI VY  RK+
Sbjct: 581  KTYEMLSSGDSIGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNIPVYIARKH 640

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G EK   IH +++ +LKET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKEEMD
Sbjct: 641  GLEKPDYIHSILEGVLKETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKEEMD 700

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+  FI+GA  NGI++  A  IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y +E
Sbjct: 701  NQRRTFINGAVNNGINQEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANYTIE 760

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  ASM L++ + +K++ FC  A+   I I+PP +N   V F +  + I Y+L A+K VG
Sbjct: 761  FFTASMNLDITDKDKLEMFCNQAKLHGINILPPDINYSKVFFVIEGSSIRYALGALKNVG 820

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  ++   +D  ++ + DF  R+ +K +++R+LE+++ AG LD    +R QL +S  
Sbjct: 821  QHAAHELI---SDVKYNDIWDFVDRISTKSVHKRMLENIIKAGVLDSIHSNRKQLFES-- 875

Query: 907  NIQKYAQWVEKNRTNKHENIFA------HEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             +  +   +E N+ N   N  +      H K   +D  T E+        +  NE   +G
Sbjct: 876  -VILFLDIIEYNKYNSSFNQISLFNDKNHYKLVETDDWTKEE--------KLYNEFSSIG 926

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY + HP+  Y+ +L K+ I        +   N +   A V+S  + ++    +   VT 
Sbjct: 927  FYLNNHPMQSYQDLLDKLNIGFINYDNKSAYNNKV---AGVISNIRVRSANRDKFALVTL 983

Query: 1021 SEPAKEYEANFF 1032
            S+P   +E  F+
Sbjct: 984  SDPNNIHEIAFY 995


>gi|88658193|ref|YP_507712.1| DNA polymerase III, alpha subunit [Ehrlichia chaffeensis str.
            Arkansas]
 gi|88599650|gb|ABD45119.1| DNA polymerase III, alpha subunit [Ehrlichia chaffeensis str.
            Arkansas]
          Length = 1120

 Score =  897 bits (2318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/1036 (45%), Positives = 678/1036 (65%), Gaps = 52/1036 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL+ HS YSLL G + ++++++       PA+A+TD+ NLF +LEFS  A + G+
Sbjct: 2    SQIFVHLRSHSDYSLLHGMIKIDSLVNLCVQYNMPALALTDSGNLFGSLEFSDYASSLGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            QPIIGC        N+ M+  G +    +  +VLLV    GY  ++ LVS  +   Q  +
Sbjct: 62   QPIIGC--------NIMMSYNGDS----IGELVLLVKDQIGYNNIVNLVSNSFKDSQSNK 109

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKKLFGDRLYVN 185
              R+ L  L ++  +G+I+LTGG  G + +    N     + +K LL F       LYV 
Sbjct: 110  VNRVDLEKLIDL-KDGIIVLTGGHDGFLSQLLLGNVIDYGIIDKLLLAFNG----NLYVE 164

Query: 186  LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQRH    ++  E  +V  AY  +LPLVATN+ LF  + D+ AHDVL  ++    ++Q+ 
Sbjct: 165  LQRHGMEEEKIIEKTLVNFAYEKDLPLVATNDVLFAKKNDFLAHDVLSCISDGNYIAQEG 224

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R   T +HY K+  EM  +F D+PEA+ NTV IA+RCSF+ +   P+LP F    C    
Sbjct: 225  RKMFTEEHYFKSSDEMYRLFKDIPEAVSNTVLIAQRCSFMPETRKPMLPHF---PCSS-G 280

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K E  EL ++A+ GL+ RL   +++       Y +RL +EL++I  M ++GYFLIV+DFI
Sbjct: 281  KNESQELISQAINGLDNRLKSKSLSTE-QVSKYYERLHYELDIIISMDYAGYFLIVSDFI 339

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             W+K+N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ
Sbjct: 340  CWSKRNDIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQ 399

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            ++RD VI YV+ KYG+  VA IITFG LQAKA LRDVGR +QMPY QVDR+CK+IP++P 
Sbjct: 400  EKRDYVIEYVRKKYGY--VAHIITFGKLQAKAVLRDVGRVMQMPYFQVDRICKMIPHNPV 457

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             PV+L +AI  D   ++ +  D +V +LLEIS KLEGLYRH S HAAGIVI DR L +L+
Sbjct: 458  KPVTLSEAIEMDKNLQKEQDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRELEELL 517

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+Y D  S LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ +    + + G  VD+S IP 
Sbjct: 518  PLYYDSTSSLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICHLVNRGGHSVDISRIPL 577

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D +TY +L+   ++G+FQLESSGMR+ +  ++PD I DIIAL+SLYRPGP+DNI +Y  
Sbjct: 578  NDRKTYEMLSAGDSVGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNISIYIA 637

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G EK   IHP+++ +L+ET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKE
Sbjct: 638  RKHGFEKPDYIHPILEDVLRETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKE 697

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMD Q+  FI+GA  NGI +  A  IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y
Sbjct: 698  EMDNQRRTFINGAVSNGIEEEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANY 757

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAI 842
             +EF  ASM L++ + +K++  C  A+   I+I+PP +N+  V F + G + I Y+L A+
Sbjct: 758  TLEFFTASMNLDIMDKDKLEMLCHQAKLHGIEILPPDINSSKVLFTIEGASSIRYALGAL 817

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            K VG  +A+ I++   D  +  + DF  RV +K +++R+LES++ AG LD    +R QL 
Sbjct: 818  KNVGQHSAKEIVD---DVAYKDIWDFIDRVSTKCVHKRILESIIKAGVLDSIHSNRKQLF 874

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA------HEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +S   +  +   +E N+ N + N F+      H K + +D  T E+        +  NE 
Sbjct: 875  ES---VFLFLDIIEYNKYNANFNQFSLFNDKNHYKLSETDDWTKEE--------KLNNEF 923

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              +GFY + HP++ YK +L K+ I G+         NN+ +   ++S  + ++    +  
Sbjct: 924  SSIGFYLNHHPMENYKYLLDKLNI-GFIHYDDKSSYNNVIVG--IISNVKVRSTNKDKFA 980

Query: 1017 WVTFSEPAKEYEANFF 1032
             VT S+P   +E  F+
Sbjct: 981  VVTLSDPFNIHEIVFY 996


>gi|269959021|ref|YP_003328810.1| DNA polymerase III alpha subunit [Anaplasma centrale str. Israel]
 gi|269848852|gb|ACZ49496.1| DNA polymerase III alpha subunit [Anaplasma centrale str. Israel]
          Length = 1127

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/1025 (46%), Positives = 676/1025 (65%), Gaps = 33/1025 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLLEG + +++++        PA+A+TD+ NLF +LEFS  A + G+QPI
Sbjct: 6    FVHLRTHSDYSLLEGMIKIDSLVAMCVDQNMPAVALTDSGNLFGSLEFSDCAASFGVQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC        N+ + + G+     + +I++L  + EG+  LI LVS  +  +Q  ++ R
Sbjct: 66   VGC--------NIMVHDAGED----LGNILMLTKSREGFANLISLVSNGFRENQSGKANR 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + +S L      GL++LTGG    + RA    S+ +     +   + FG  +YV LQRH 
Sbjct: 114  VNVSDLLR-QGSGLLLLTGGHDDILARALLRKSAGLGAINAVL--EAFGSDVYVELQRH- 169

Query: 191  GYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            G +  +E +  ++  AY   +PLVATN+  F   +D++AHDVL  ++  T + Q+ R R+
Sbjct: 170  GLESQKEVEGLLISFAYERNVPLVATNDVFFARRDDFQAHDVLSCISDGTYIVQEGRRRL 229

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T +HY K   EM  +F+D+PEA+ NT  IARRCSFI ++  P LP F    C D + E E
Sbjct: 230  TEEHYFKTSKEMFELFADIPEAVRNTPMIARRCSFIAEIRKPSLPHF---PCSDGRTEAE 286

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL   A  GLE RL    I +   A+ Y  RL +EL V+  M +SGYFLIVADFI W+K
Sbjct: 287  -ELTECAKTGLEARLRTKNIDEDRRAK-YHDRLQYELGVVISMDYSGYFLIVADFICWSK 344

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            KN+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNP+R+SMPDFDIDFCQ++RD
Sbjct: 345  KNDIMVGPGRGSGAGSLIAWSLGITDLDPIEFGLIFERFLNPERVSMPDFDIDFCQEKRD 404

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI YV+ KYG+  VA IITFG LQA+A LRDVGR +Q+PY+Q+D++CK+IP DP  PV+
Sbjct: 405  RVIEYVREKYGY--VAHIITFGKLQARAVLRDVGRVMQIPYAQIDKICKMIPLDPVSPVT 462

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L +AI  D   +  + +D +V +LLEIS KLEGLYRHAS HAAGIVI D+PL   VP+Y 
Sbjct: 463  LSEAIEMDQNLKREQESDHTVAKLLEISLKLEGLYRHASVHAAGIVICDKPLEDFVPLYY 522

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D    LP+TQ+NMK++EKAGL+KFDFLGL+TLT+L +    +  RG+ ++LS +P DD +
Sbjct: 523  DQSCSLPITQYNMKYVEKAGLVKFDFLGLRTLTVLDQVRSLIQDRGISIELSELPLDDSK 582

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L+T  ++G+FQLES+GMR+A+  ++PD I+DIIAL+SLYRPGP++NI +Y  RK+G
Sbjct: 583  TYEMLSTGNSVGVFQLESAGMREAISKLRPDGIQDIIALISLYRPGPMNNIAIYIARKHG 642

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E    IHP+++ +LKET GVIIYQEQVM+IA++L+GYSL  AD+LRRAMGKKIKEEMDK
Sbjct: 643  LESPDYIHPMLEGVLKETFGVIIYQEQVMEIARILAGYSLGSADLLRRAMGKKIKEEMDK 702

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q++ F++GA KNGI +  A  IF+L+AKFA YGFNKSHAAAYA+IS+QTA++K +Y  EF
Sbjct: 703  QRQNFVNGAVKNGIDRGKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYLKANYTKEF 762

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              ASM L++ + +K++  CQ A+   ++++PP VN+  V F +  + I Y L A+K VG 
Sbjct: 763  FTASMNLDIGDKDKLELLCQQAKACGVRVLPPDVNSSGVLFTISGDAIKYGLGALKNVGQ 822

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            T AR ++   A K +  + DF   + +K   +RV+ESL+ +GALD    +R QL +SL  
Sbjct: 823  TAAREVV-PEAGKQYSDIWDFARNMRAKWACKRVMESLIKSGALDSIHPNRRQLFESLGT 881

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            I         +  +K  N+F   +G     + +E +S E    +  +E   LGFY   HP
Sbjct: 882  ILDVIDDTRNSAESKQFNLFGITEG--HKLLEVEDWSEEE---KIAHEFSTLGFYLRYHP 936

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L  Y+ +LR +GI+   E   ++  + I+ +A  +S  + ++    R   V  S+P    
Sbjct: 937  LAKYEGVLRGLGIRFVSECQNSVE-SGIKKSAGTISSVRIRSANKERFAVVRISDPYGVN 995

Query: 1028 EANFF 1032
            +  F+
Sbjct: 996  DVAFY 1000


>gi|103486667|ref|YP_616228.1| DNA polymerase III, alpha subunit [Sphingopyxis alaskensis RB2256]
 gi|98976744|gb|ABF52895.1| DNA polymerase III, alpha subunit [Sphingopyxis alaskensis RB2256]
          Length = 1162

 Score =  894 bits (2309), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1039 (46%), Positives = 652/1039 (62%), Gaps = 33/1039 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKACAAGIQP 69
            FV L+V SSY++LEGA+    I  K A D+  PAIA+ D N L+  + F +   AAG+QP
Sbjct: 6    FVPLRVFSSYTMLEGAIEPKAIA-KAARDRGFPAIAVADRNGLYGVMAFGEACQAAGVQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G  L +  +   ++ N      P +  + L    A GY  L  LVS  +L    +Q  
Sbjct: 65   IVGALLSV-ARPGQRLANGA----PLIDWLALYAQDARGYHNLCALVSAAHLGRPVEQEP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + LS +    T+GLI LTGG  G + R         AE  +   + LFG+RLY+ L R 
Sbjct: 120  HVALSDMTGR-TDGLICLTGGGEGALARLLAGEQQSAAEDYMEQLEALFGERLYIELSR- 177

Query: 190  RG--YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RG   +   E+ ++ +AY   LPLVATN + F+  + + AHD ++ +A S  V  +DR  
Sbjct: 178  RGDATEAAAENALIDMAYARALPLVATNPANFVEPQFHAAHDAMLCIAQSAYVESEDRRV 237

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              P+ +LK    M   FSDLPEA+ NT+ IA+RC+F+     PILP          ++ E
Sbjct: 238  SNPEAWLKPAEAMEDAFSDLPEAIRNTLVIAQRCAFMAPKRKPILPSLAGD-----REGE 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              +L+  A AGL+ RLA          Q Y +RLD+E++VI +M F GYFLIVADFI+WA
Sbjct: 293  AAQLKADAHAGLDARLAHYPDLTDEERQAYVERLDYEIDVITQMGFPGYFLIVADFIKWA 352

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K  +IPVGPGRGSGAGSV A+ALTITD+DPL+  LLFERFLNP+R+SMPDFDIDFC+ RR
Sbjct: 353  KAQDIPVGPGRGSGAGSVVAWALTITDLDPLKLGLLFERFLNPERVSMPDFDIDFCETRR 412

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVIRYVQ KYG + VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P  P 
Sbjct: 413  GEVIRYVQEKYGRDTVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPW 472

Query: 488  SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L+ A+   S        D  V RL +++++LEGL RH+STHAAG+VIGDRPL QLVP+Y
Sbjct: 473  TLERALNGVSELMTEYKQDDGVRRLFDMARQLEGLPRHSSTHAAGVVIGDRPLDQLVPLY 532

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            RD RSD+PVTQF+MK++E AGL+KFDFLGLKTL++L+++   LA RG+ VDL  + +DD 
Sbjct: 533  RDPRSDMPVTQFDMKYVETAGLVKFDFLGLKTLSVLKEARRLLALRGIDVDLDTLRWDDA 592

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y LL    T+G+FQLES GMR+ L  ++P    DIIALV+LYRPGP+DNI ++  RKN
Sbjct: 593  QVYELLQRGDTVGVFQLESEGMRRTLSAVKPTSFGDIIALVALYRPGPMDNIPLFGARKN 652

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E I   HPL++ +L ET G+ +YQEQVMQ AQ+L+GYSL  AD+LRRAMGKKI+ EMD
Sbjct: 653  GREPIAYPHPLLEGILAETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKIQAEMD 712

Query: 727  KQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             Q+E F+ G  + N I    A  +F+L+ KFA YGFNKSHAAAYA++SYQTAW+K H+P 
Sbjct: 713  AQRETFVKGCGEHNQIDAKTANELFDLIDKFAGYGFNKSHAAAYALLSYQTAWLKAHHPH 772

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----RIYYSLAA 841
            EF AASM+ +    +K+  F  D R+  I I PPS+N    DF VG       + Y+L A
Sbjct: 773  EFFAASMSFDSHQTDKLSVFIDDMRRLGIDIAPPSINESEADFSVGRTDDGLAVRYALGA 832

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +KGVG      ++ E  A   F SL+DF SR+D K LNRR +E+L  AGA DC    R +
Sbjct: 833  LKGVGEKAMEALVAERQARGDFASLDDFASRIDPKLLNRRQIEALAGAGAFDCVEPDRPR 892

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRV 958
                 + +   A      R+     +F    G  +   TL+  + E  ++  R   E+  
Sbjct: 893  AFAGAEALLACANSSAHERSTGQGGLFG---GDIAIAPTLQLPAAEPWTLAERMTREKEA 949

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYE---ESVATIRGNNIR--LAAMVVSKQQKKTRKGS 1013
             GFYFS HP++ Y+ IL   G + Y    E+V    G  I   +AAMV S + + +++G+
Sbjct: 950  FGFYFSAHPVEQYEAILSARGARSYGDICENVEMTPGTRIPMVMAAMVESARARVSQRGN 1009

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            R   +T S+ + +++++ F
Sbjct: 1010 RFLNLTLSDRSGQFQSSCF 1028


>gi|58696665|ref|ZP_00372218.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of
            Drosophila simulans]
 gi|58537166|gb|EAL60270.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of
            Drosophila simulans]
          Length = 1120

 Score =  892 bits (2305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/1025 (46%), Positives = 660/1025 (64%), Gaps = 45/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS YSLLE ++ +  ++     ++ PA+AITD+ NLF +LEF++ A + GIQ I
Sbjct: 13   FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFAEYAASRGIQLI 72

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129
            IGC +         +    +   P    I+LL    +GY  L+ LVS  +   +    + 
Sbjct: 73   IGCNI---------IVKHSEQNLP----ILLLAKNEQGYTNLVTLVSESFRKRKNNSDIP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L  + T GLI LTGG    + +       +  EK L      F   LYV LQRH
Sbjct: 120  YVDFDELLNLST-GLIALTGGC---LAQLLLGQDKETVEKLL----SAFNGHLYVELQRH 171

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E  ++  AY   +PLVATN+  F +  DYEA+D+L  ++  +   + +R ++
Sbjct: 172  GLSKELELEETLIDFAYQRNIPLVATNDVFFPNRSDYEAYDILTCISEGSYALENNRKKL 231

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T +HY K+ +EM  +FSD+PEA+ NT+ IA+RCS++ +   PILP+F  +E     K E 
Sbjct: 232  TTEHYFKSVAEMEELFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTEN 287

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             ELR +AVAGLE R+A          + Y  RL++EL+VI  M ++GYFLIV+DFI+W+K
Sbjct: 288  EELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSK 344

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N IPVGPGRGSGAGS+ A+ L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD
Sbjct: 345  ANGIPVGPGRGSGAGSIVAWGLQITDLDPIKFGLIFERFLNPDRISMPDFDIDFCQEKRD 404

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI YVQ KYG+  VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+
Sbjct: 405  LVIDYVQKKYGY--VAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVT 462

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L QAI  D   ++ R +D  + +LL+IS KLEG+YRH STHAAGIVI D+ L   VP+Y 
Sbjct: 463  LSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYY 522

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D  S LP+TQ++MK++EKAGLIKFDFLGL TLTL+      + +   K+D+S +P DD +
Sbjct: 523  DPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDRQKIDISSVPLDDQK 582

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L++  ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  RK+G
Sbjct: 583  TYEMLSSGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHG 642

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             EK   IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEMDK
Sbjct: 643  LEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEMDK 702

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+E FI GA+KNG+    A  IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+EF
Sbjct: 703  QRELFIQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLEF 762

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A M L +D+ +K+  F   A+   + ++ P +N    +F + D RI Y +AA++ VG 
Sbjct: 763  FTALMNLNIDDRDKLNLFYHAAKFSGVTVLSPDINKSQAEFSIEDERIRYGIAALRNVGF 822

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            + A  I+   +    D  E F        +N+R LESL+ +GA D    +R QL +S+D 
Sbjct: 823  SIAEGIVNVRSSACKDIWE-FIQN-SGHIINKRALESLIKSGAFDSVHKNRKQLYESMDT 880

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  +A   +++R +    +F            +E F  E    + E+E   LGFY + HP
Sbjct: 881  LIYFANKNKQDRESSQAALFGSLDVLKPKLENVEDFDEEE---KLEHELFSLGFYLTNHP 937

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L+ ++ +L K+ I G+      I  N     A V+   + +T +  R   +T S+P    
Sbjct: 938  LEKFRTLLEKLNI-GF------IGENRTAKTAGVILNARMRTSERGRFVILTLSDPHNVS 990

Query: 1028 EANFF 1032
            E  F+
Sbjct: 991  EIAFY 995


>gi|42520619|ref|NP_966534.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of
            Drosophila melanogaster]
 gi|42410358|gb|AAS14468.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of
            Drosophila melanogaster]
          Length = 1109

 Score =  892 bits (2305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/1026 (46%), Positives = 664/1026 (64%), Gaps = 47/1026 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS YSLLE ++ +  ++     ++ PA+AITD+ NLF +LEF++ A + GIQ I
Sbjct: 2    FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFAEYAASRGIQLI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129
            IGC +         +    +   P    I+LL    +GY  L+ LVS  +   +    + 
Sbjct: 62   IGCNI---------IVKHSEQNLP----ILLLAKNEQGYTNLVTLVSESFRKRKNNSDIP 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L  + T GLI LTGGS   + +       +  EK L      F   LYV LQRH
Sbjct: 109  YVDFDELLNLST-GLIALTGGS---LAQLLLGQDKETVEKLL----SAFNGHLYVELQRH 160

Query: 190  RGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             G ++  E +  ++  AY   +PLVATN+  F +  DYEA+D+L  ++  +   + +R +
Sbjct: 161  -GLNKELELEEALIDFAYQRNIPLVATNDVFFPNRSDYEAYDILTCISEGSYALENNRKK 219

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +T +HY K+ +EM  +FSD+PEA+ NT+ IA+RCS++ +   PILP+F  +E     K E
Sbjct: 220  LTTEHYFKSVAEMEELFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTE 275

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              ELR +AVAGLE R+A          + Y  RL++EL+VI  M ++GYFLIV+DFI+W+
Sbjct: 276  NEELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWS 332

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N IPVGPGRGSGAGS+ A+ L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++R
Sbjct: 333  KANGIPVGPGRGSGAGSIVAWGLQITDLDPIKFGLIFERFLNPDRVSMPDFDIDFCQEKR 392

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YVQ KYG+  VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV
Sbjct: 393  DLVIDYVQKKYGY--VAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPV 450

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L QAI  D   ++ R +D  + +LL+IS +LEG+YRH STHAAGIVI D+ L   VP+Y
Sbjct: 451  TLSQAIEFDQNLQKERDSDEVIAKLLDISLRLEGIYRHVSTHAAGIVICDQKLENFVPVY 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S LP+TQ++MK++EKAGLIKFDFLGL TLTL+      + + G K+D+S +P +D 
Sbjct: 511  YDPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDGKKIDISSVPLNDQ 570

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L++  ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  RK+
Sbjct: 571  KTYEILSSGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKH 630

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G EK   IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEMD
Sbjct: 631  GLEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEMD 690

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            KQ+E FI GA+KNG+    A  IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+E
Sbjct: 691  KQRELFIQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLE 750

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  A M L +D+ +K+  F   A+   + ++ P +N    +F + D RI Y +AA++ VG
Sbjct: 751  FFTALMNLNIDDRDKLNLFYHAAKFSGVTVLSPDINNSQAEFSIEDERIRYGIAALRNVG 810

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
             +    I+   +    D  E F        +N+R LESL+ +GA D    +R QL +S+D
Sbjct: 811  FSIVEGIVNVRSSACKDIWE-FIQN-SGHIINKRALESLIKSGAFDSVHKNRKQLYESMD 868

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             +  +A   ++++ +    +F            +E F  E    + E+E   LGFY + H
Sbjct: 869  TLIYFANKNKQDKESSQAALFGSLDVLKPKLENVEDFDEEE---KLEHELFSLGFYLTNH 925

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            PL+ ++ +L K+ I G+      I  N     A V+   + +T +  R   +T S+P   
Sbjct: 926  PLEKFRTLLEKLNI-GF------IGENRTAKTAGVILNARMRTSERGRFVILTLSDPHNV 978

Query: 1027 YEANFF 1032
             E  F+
Sbjct: 979  SEIAFY 984


>gi|225630393|ref|YP_002727184.1| DNA polymerase III, alpha subunit [Wolbachia sp. wRi]
 gi|225592374|gb|ACN95393.1| DNA polymerase III, alpha subunit [Wolbachia sp. wRi]
          Length = 1158

 Score =  892 bits (2304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/1025 (46%), Positives = 660/1025 (64%), Gaps = 45/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS YSLLE ++ +  ++     ++ PA+AITD+ NLF +LEF++ A + GIQ I
Sbjct: 51   FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFAEYAASRGIQLI 110

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129
            IGC +         +    +   P    I+LL    +GY  L+ LVS  +   +    + 
Sbjct: 111  IGCNI---------IVKHSEQNLP----ILLLAKNEQGYTNLVTLVSESFRKRKNNSDIP 157

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L  + T GLI LTGG    + +       +  EK L      F   LYV LQRH
Sbjct: 158  YVDFDELLNLST-GLIALTGGC---LAQLLLGQDKETVEKLL----SAFNGHLYVELQRH 209

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E  ++  AY   +PLVATN+  F +  DYEA+D+L  ++  +   + +R ++
Sbjct: 210  GLSKELELEETLIDFAYQRNIPLVATNDVFFPNRSDYEAYDILTCISEGSYALENNRKKL 269

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T +HY K+ +EM  +FSD+PEA+ NT+ IA+RCS++ +   PILP+F  +E     K E 
Sbjct: 270  TTEHYFKSVAEMEELFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTEN 325

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             ELR +AVAGLE R+A          + Y  RL++EL+VI  M ++GYFLIV+DFI+W+K
Sbjct: 326  EELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSK 382

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N IPVGPGRGSGAGS+ A+ L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD
Sbjct: 383  ANGIPVGPGRGSGAGSIVAWGLQITDLDPIKFGLIFERFLNPDRISMPDFDIDFCQEKRD 442

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI YVQ KYG+  VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+
Sbjct: 443  LVIDYVQKKYGY--VAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVT 500

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L QAI  D   ++ R +D  + +LL+IS KLEG+YRH STHAAGIVI D+ L   VP+Y 
Sbjct: 501  LSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYY 560

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D  S LP+TQ++MK++EKAGLIKFDFLGL TLTL+      + +   K+D+S +P DD +
Sbjct: 561  DPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDRQKIDISSVPLDDQK 620

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L++  ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  RK+G
Sbjct: 621  TYEMLSSGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHG 680

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             EK   IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEMDK
Sbjct: 681  LEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEMDK 740

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+E FI GA+KNG+    A  IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+EF
Sbjct: 741  QRELFIQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLEF 800

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A M L +D+ +K+  F   A+   + ++ P +N    +F + D RI Y +AA++ VG 
Sbjct: 801  FTALMNLNIDDRDKLNLFYHAAKFSGVTVLSPDINKSQAEFSIEDERIRYGIAALRNVGF 860

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            + A  I+   +    D  E F        +N+R LESL+ +GA D    +R QL +S+D 
Sbjct: 861  SIAEGIVNVRSSACKDIWE-FIQN-SGHIINKRALESLIKSGAFDSVHKNRKQLYESMDT 918

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  +A   +++R +    +F            +E F  E    + E+E   LGFY + HP
Sbjct: 919  LIYFANKNKQDRESSQAALFGSLDVLKPKLENVEDFDEEE---KLEHELFSLGFYLTNHP 975

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L+ ++ +L K+ I G+      I  N     A V+   + +T +  R   +T S+P    
Sbjct: 976  LEKFRTLLEKLNI-GF------IGENRTAKTAGVILNARMRTSERGRFVILTLSDPHNVS 1028

Query: 1028 EANFF 1032
            E  F+
Sbjct: 1029 EIAFY 1033


>gi|58584756|ref|YP_198329.1| DNA polymerase III alpha subunit [Wolbachia endosymbiont strain TRS
            of Brugia malayi]
 gi|58419072|gb|AAW71087.1| DNA polymerase III alpha subunit [Wolbachia endosymbiont strain TRS
            of Brugia malayi]
          Length = 1112

 Score =  891 bits (2302), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/1027 (46%), Positives = 667/1027 (64%), Gaps = 46/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS YSLLE ++ +  ++     ++ PA+AITD+ NLF +LEFS+ A + GIQ I
Sbjct: 2    FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFSEYAASRGIQLI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129
             GC + +   +              +P I+LL    +GY  L+ LVS  +   +    + 
Sbjct: 62   TGCNIIVRYSEQ------------NLP-ILLLTKNEQGYTNLVTLVSESFRKRKNNSDIP 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L  + T GLI LTGG  G + +  F     + EK LL F       LYV LQRH
Sbjct: 109  YVDFDELLNLST-GLITLTGGCDGILAQLLFRQDKGIVEKLLLAF----NGHLYVELQRH 163

Query: 190  RGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             G ++  E +  ++  AY H +PLVATN+  F +  DYEA+D+L  ++  +   + +R +
Sbjct: 164  -GLNKELELEETLIDFAYQHNIPLVATNDVFFPNRSDYEAYDILTCISEGSYTLENNRKK 222

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +T +HY K+ +EM  +FSD+PEA+ NT+ IA+RCS++ +   PILP+F  +E     K E
Sbjct: 223  LTTEHYFKSVAEMEKLFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTE 278

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL+ +A AGLE+R+A          + Y  RL++EL+VI  M ++GYFLIV+DFI+W+
Sbjct: 279  NEELKEQATAGLELRIANKI---DIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWS 335

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N IPVGPGRGSGAGS+ A+AL ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++R
Sbjct: 336  KANGIPVGPGRGSGAGSIVAWALQITDLDPIKFGLIFERFLNPDRISMPDFDIDFCQEKR 395

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YVQ KYG+  VAQIITFG LQA+A LRDVGR LQM Y+QVD++ K++P +P +PV
Sbjct: 396  DLVIDYVQKKYGY--VAQIITFGKLQARAVLRDVGRVLQMSYTQVDKISKMVPFNPVNPV 453

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L QAI  D   ++ R +D  + +LL+IS KLEG+YRH STHAAGIVI D+ L   VP+Y
Sbjct: 454  TLSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVY 513

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S LP+TQ++MK++EKAGLIKFDFLGL TLTL+      + Q G K+D++ +  +D 
Sbjct: 514  YDPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINQNGKKIDIASVSLNDR 573

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L+   ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  RK+
Sbjct: 574  KTYEMLSNGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYIARKH 633

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G EK   IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIK EMD
Sbjct: 634  GLEKPDYIHPLLERVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKAEMD 693

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            KQ++ F+ GA+KNG+    A  IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+E
Sbjct: 694  KQRKLFVQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLE 753

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  A M L +D+ +K+  F   A+   + ++ P ++    +F +    I Y +AA++ VG
Sbjct: 754  FFTALMNLNIDDRDKLNLFYHAAKFSGVSVLLPDISKSKAEFSIEGKHIRYGIAALRNVG 813

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
             + A  I+   +   +  + +F         N+R LESL+ +GA D    +R QL +S+D
Sbjct: 814  FSIAEGIVNTRSS-TYKDIWEFIQN-SGHITNKRALESLIKSGACDSVHKNRKQLYESID 871

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965
             +  +A    ++R +    +F    G F+  K  LEK    N   + E+E   LGFY + 
Sbjct: 872  TLVYFANKNRQDRESNQAVLF----GNFNVLKPKLEKVKDFNEEEKLEHELFSLGFYLTS 927

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HPL+ ++ +L K+ I G+      I  N I   A V+   + +T +  R   +T S+P  
Sbjct: 928  HPLEKFRTLLEKLNI-GF------IGENKIAKTAGVILNVRMRTSERGRFVILTLSDPHN 980

Query: 1026 EYEANFF 1032
              E  F+
Sbjct: 981  VSEIAFY 987


>gi|114800101|ref|YP_760471.1| DNA polymerase III subunit alpha [Hyphomonas neptunium ATCC 15444]
 gi|114740275|gb|ABI78400.1| DNA polymerase III, alpha subunit [Hyphomonas neptunium ATCC 15444]
          Length = 1140

 Score =  887 bits (2292), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/1032 (45%), Positives = 648/1032 (62%), Gaps = 31/1032 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL + SS+SLLE  ++  ++         PA+A+TD N LF ALE S K    G+Q
Sbjct: 4    PVFIHLAIRSSFSLLESMITPADLAKWCKQYSMPAMAVTDRNCLFGALELSIKLSDYGVQ 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI+ C  D+             +P   +  +        GY+RL+ L SR YL  D G  
Sbjct: 64   PIMACCFDV----------TDGSPKAELFRLTAYAQDDVGYKRLMFLSSRAYLEADDGVP 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+   +L E  TEGLI+LTGG+ G + R         A   L T    +  R YV + 
Sbjct: 114  --RLHKKYLLE-NTEGLILLTGGAEGEVARHILKGRLADARTELSTLATAYPGRCYVEIT 170

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH   +  + E+ +V+LAY   LPLVAT+++ FL  ED  AHD +M +A+   + Q DR 
Sbjct: 171  RHGTQEEIKSETGLVELAYELGLPLVATHDARFLKPEDVTAHDAMMCIANGQYLGQDDRK 230

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            RV PD YLK+  EM  +F+DLPEA+ NT EIA RCS   +   PILP F ++      + 
Sbjct: 231  RVEPDQYLKSPEEMEVLFADLPEAIANTSEIAIRCSVRAETRKPILPNFSKE-----GRS 285

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            E  EL  +A  GLE RLA+   A   +A  Q Y  RL++EL +I RM F GYFLIV+DFI
Sbjct: 286  EGEELALQARQGLEERLAE---ADRLYAERQVYLDRLEYELGIIDRMGFPGYFLIVSDFI 342

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK N IPVGPGRGSGAGS+ A+ L ITD+DPLRF LLFERFLNP+R+SMPDFD+DFCQ
Sbjct: 343  KWAKANGIPVGPGRGSGAGSLVAWVLLITDLDPLRFDLLFERFLNPERVSMPDFDVDFCQ 402

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVIRYV+ KYG + VA IITFG+LQAKA +RDVGR +QMPY QVDRL KLIP +PA
Sbjct: 403  ERRGEVIRYVREKYGADSVAMIITFGTLQAKAVVRDVGRVMQMPYGQVDRLAKLIPFNPA 462

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             P +L +AIA + +F +   AD  V  L++ ++ LEG+YR+A THAAG+VI DRPL +LV
Sbjct: 463  KPPTLDEAIAAEPKFDDEIAADARVGELIDTARALEGMYRNAGTHAAGVVIADRPLVELV 522

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+Y D R+DLP TQFNMK+ E AGL+KFDFLGLKTLT++ ++L+F+ + G  V  +    
Sbjct: 523  PLYNDPRADLPATQFNMKYAEMAGLVKFDFLGLKTLTVIDRALNFIRRDGGDVGPAWRSM 582

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  TY L+ +  TLG+FQLE +GMR  L  ++P+ IED+IA++SLYRPGP++NI VY  
Sbjct: 583  DDPATYELMASGETLGVFQLEGAGMRDTLRRVRPNNIEDLIAIISLYRPGPMENIPVYVQ 642

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             K     +   HP + P+L+ T GV +YQEQVM++AQ ++GYSL EAD+LRRAMGKK  E
Sbjct: 643  GKEDPASVRYQHPDLKPVLEATYGVPVYQEQVMRMAQEIAGYSLGEADLLRRAMGKKKLE 702

Query: 724  EMDKQKERFISGASKN-GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EM  Q+ RF+ GA+ N G+  ++A  IF+ + KFA YGFNKSHAAAYA+I Y TA++K H
Sbjct: 703  EMIAQRRRFVEGAAANKGMKDSLANEIFDTMEKFAGYGFNKSHAAAYALIGYHTAFLKCH 762

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP EFLAASM+L++ N +K+  F Q+A++  + ++ P +N+   DF V ++ I Y+L AI
Sbjct: 763  YPKEFLAASMSLDIGNTDKLAAFFQEAKRLRLHVLAPDINSSQPDFDVNEDGIVYALGAI 822

Query: 843  KGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGVG    +H+    S   PF  L DF  RVD K +N++ LESL  +GALDC   +R ++
Sbjct: 823  KGVGVEAMKHVSAVRSEGGPFKDLYDFAERVDPKHVNKKALESLAKSGALDCLEGNRARV 882

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +  + +Y     ++R+     +F   +     +    +     +  + + E + +GF
Sbjct: 883  FAVVPMLAQYCASHAEDRSGGQGGLFGESEPALRPEFPPSR--PWTAQQKLDEEFKSIGF 940

Query: 962  YFSGHPL-DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            YFSGHPL DV   I R       E       G  + +  +V ++  K +++G +  ++T 
Sbjct: 941  YFSGHPLDDVLTSIDRDRVTLAMEVHERAGDGKPLEMIGIVRTRNDKPSKRGGKFAFLTI 1000

Query: 1021 SEPAKEYEANFF 1032
            S+P  E E   F
Sbjct: 1001 SDPTGELEMMVF 1012


>gi|294011725|ref|YP_003545185.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S]
 gi|292675055|dbj|BAI96573.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S]
          Length = 1178

 Score =  886 bits (2289), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1041 (46%), Positives = 650/1041 (62%), Gaps = 31/1041 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L+V SS+++LEGA+    I  +  A   PA AITD N L+ ++ FS      G+QP
Sbjct: 5    GFVPLRVFSSFTMLEGAIDPKKIAKQAKALGFPAAAITDRNGLYGSMAFSDACKGEGVQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  + +   D  +  N      P    I L    A GY  L  LVS  +L    ++  
Sbjct: 65   IIGAMVGVSRPD--RPANAA----PVHDWIALYAQDAAGYDNLCALVSMAHLDRPVEEVP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QR 188
             I L  L E  T+GLI LT G  G + R F  +    A       + LF  RLY+ + +R
Sbjct: 119  HISLDML-EGRTDGLIALTAGGEGALARLFAEDQPAAALAYAKRLEALFPGRLYIEICRR 177

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E +++ LAY  +LPLVATN + F     +EAHDV++ +A S  V   DR   
Sbjct: 178  FDPIEGKAEPELLDLAYARDLPLVATNPTCFAEPHFHEAHDVMLCIADSAYVETPDRRTS 237

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +PD ++K  +EM  +F DLPEAL NT+ +A+RC+       PILP        DI+ E +
Sbjct: 238  SPDAWMKPAAEMKRLFDDLPEALANTLVVAQRCAVAAPKRKPILPSL----AGDIEGEAK 293

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR +A AGLE RLA+  IA     + Y +RL FE ++I +M F GYFLIVADFI+WAK
Sbjct: 294  M-LREQATAGLEARLAKAGIADEEARKPYFERLKFETDIIIQMGFPGYFLIVADFIKWAK 352

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              +IPVGPGRGSGAGSV A+ALTITD+DPL+  LLFERFLNP+R+SMPDFDIDFC+ RR 
Sbjct: 353  DKDIPVGPGRGSGAGSVVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFCETRRG 412

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVIRYVQ KYG + VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P  P +
Sbjct: 413  EVIRYVQQKYGADHVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWT 472

Query: 489  LQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L+ ++   + FR     D  V RL++ + KLEG  RH+STHAAG+VIGDRPLSQLVP+YR
Sbjct: 473  LERSLNGVAEFRAEYDNDAQVKRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLSQLVPLYR 532

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++  LA RGV++DL+ + +DD  
Sbjct: 533  DPRSDMPVTQFDMKYVEGAGLVKFDFLGLKTLSVLQKAVQLLAGRGVEIDLNSLGWDDPA 592

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             Y LL    T+G+FQLES GMR+ L  ++P    DIIALVSLYRPGP+DNI ++  RKNG
Sbjct: 593  VYELLQRGDTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDNIPMFGRRKNG 652

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E+I   H L+ P+L+ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKKIK EMD 
Sbjct: 653  QEEIEYPHILLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKIKAEMDA 712

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+ RF+ G +K+ I+   A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K HYP EF
Sbjct: 713  QRARFVEGCAKSDIAAAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPAEF 772

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDN-----RIY 836
             AASM  ++   +K+  F  D R+  +  + P +N    DF V      GD+      + 
Sbjct: 773  YAASMAFDIHLTDKLTVFVDDMRRMGLTCLAPDINRSLADFSVEAVDCEGDDPRLGFAVR 832

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y+L  +KGVG      ++ E  A   F SL+DF  R++ + LNRR LESL  AGA D   
Sbjct: 833  YALGGLKGVGEKAMEQLVAEREAGGSFKSLDDFADRIEPRLLNRRQLESLAAAGAFDGVH 892

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R  +  + + I   A    + R +    +F   +   +D + +      +++ R   E
Sbjct: 893  PDRAGVHAAAETILSVASSAAEARESGQGGLFGDVETPHAD-VRVPPHQTWSTADRMAQE 951

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGY----EESVATIRGNNIRLAAMVVSKQQKKTRK 1011
            +   GFYFS HP+D Y+ +    G K Y     E VA     N  +AAMV   + ++TR+
Sbjct: 952  KEAFGFYFSAHPVDRYRHLAEARGAKSYGAICAEPVAEGGRANGVMAAMVEDVRWRETRR 1011

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G+R    TFS+ + +++A+ F
Sbjct: 1012 GARYAAATFSDSSGQFQASCF 1032


>gi|213019585|ref|ZP_03335391.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Culex
            quinquefasciatus JHB]
 gi|212995007|gb|EEB55649.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Culex
            quinquefasciatus JHB]
          Length = 1118

 Score =  884 bits (2283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/1028 (46%), Positives = 665/1028 (64%), Gaps = 54/1028 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS YSLLE ++ +  ++     ++ PA+A+TD+ NLF +LEF++ A   GIQ I
Sbjct: 14   FIHLRVHSVYSLLESSVKIEELIGLCLQNKMPAVAVTDSGNLFGSLEFAEYAANKGIQLI 73

Query: 71   IGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +GC + +  ++ NL              SI+LL    +GY  L+ LVS  +   + K S 
Sbjct: 74   VGCNIIVRHLEQNL--------------SILLLAKNEQGYTNLVTLVSESF--KKRKNSS 117

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             I      E+ +   GLI LTGG    + +       +  EK L      F   LYV LQ
Sbjct: 118  DIPYVDFDELLSFNTGLIALTGGC---LAQLLLEQDKETVEKLL----SAFDGHLYVELQ 170

Query: 188  RHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            RH G ++  E +  ++  AY   +PLVATN+  F +  DYEA+D+L  ++  +   + +R
Sbjct: 171  RH-GLNKELELEEALIDFAYQRNIPLVATNDVFFSNRSDYEAYDILTCISEGSYALENNR 229

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             ++T +HY K+ +EM  +FSD+PEA+ NT+ IA+RCS++ +   PILP+F  +E     K
Sbjct: 230  KKLTTEHYFKSVAEMEELFSDIPEAIYNTLVIAKRCSYMPRSRQPILPKFPCRE----NK 285

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E  ELR +AVAGLE R+A          + Y  RL++EL+VI  M ++GYFLIV+DFI+
Sbjct: 286  TENEELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIR 342

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            W+K N IPVGPGRGSGAGS+ A++L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ+
Sbjct: 343  WSKANGIPVGPGRGSGAGSIVAWSLQITDLDPIKFGLIFERFLNPDRVSMPDFDIDFCQE 402

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            +RD VI YVQ KYG+  VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +
Sbjct: 403  KRDLVIDYVQKKYGY--VAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVN 460

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            PV+L QAI  D   ++ R +D  + +LL+IS KLEG+YRH STHAAGIVI D+ L   VP
Sbjct: 461  PVTLSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVP 520

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +Y D  S LP+TQ++MK++EKAGLIKFDFLGL TLTL+      + +   K D+S +   
Sbjct: 521  VYYDPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDKKKFDISSVSLI 580

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY +L+   ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  R
Sbjct: 581  DQRTYEMLSRGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVAR 640

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G EK   IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIK E
Sbjct: 641  KHGLEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKAE 700

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MDKQ+E F+ GA+KNG+    A  IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +YP
Sbjct: 701  MDKQRELFVQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAIISYQTAYLKANYP 760

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF  A M L +D+ +K+  F   A+   + ++ P ++    +F +G   I Y +AA++ 
Sbjct: 761  LEFFTALMNLNIDDRDKLNLFYHAAKFSGVAVLSPDISKSKAEFSIGGEHIRYGIAALRN 820

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG   A  I+ A +   +  + +F   +    +N+R LESL+ +G  D    +R QL +S
Sbjct: 821  VGFAIAEGIVNARSSS-YKDIWEFIQNL-GHIINKRALESLIKSGTFDSVHKNRKQLYES 878

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +D +  +A    KNR +    +F H       K  LE     N   + E+E   LGFY +
Sbjct: 879  IDTLIYFAN---KNRQSNQAALFGHLDIL---KPKLENVEDFNEEEKLEHELFSLGFYLT 932

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HPL+ ++ +L+K+ I    ES        I+ A ++++ + + + +G R   +T S+P 
Sbjct: 933  NHPLEKFRTLLKKLNIGFIGES------KTIKTAGVILNVRMRTSERG-RFVILTLSDPH 985

Query: 1025 KEYEANFF 1032
               E  F+
Sbjct: 986  NVSEIAFY 993


>gi|190571064|ref|YP_001975422.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Culex
            quinquefasciatus Pel]
 gi|190357336|emb|CAQ54766.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Culex
            quinquefasciatus Pel]
          Length = 1106

 Score =  883 bits (2282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/1028 (46%), Positives = 665/1028 (64%), Gaps = 54/1028 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS YSLLE ++ +  ++     ++ PA+A+TD+ NLF +LEF++ A   GIQ I
Sbjct: 2    FIHLRVHSVYSLLESSVKIEELIGLCLQNKMPAVAVTDSGNLFGSLEFAEYAANKGIQLI 61

Query: 71   IGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +GC + +  ++ NL              SI+LL    +GY  L+ LVS  +   + K S 
Sbjct: 62   VGCNIIVRHLEQNL--------------SILLLAKNEQGYTNLVTLVSESF--KKRKNSS 105

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             I      E+ +   GLI LTGG    + +       +  EK L      F   LYV LQ
Sbjct: 106  DIPYVDFDELLSFNTGLIALTGGC---LAQLLLEQDKETVEKLL----SAFDGHLYVELQ 158

Query: 188  RHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            RH G ++  E +  ++  AY   +PLVATN+  F +  DYEA+D+L  ++  +   + +R
Sbjct: 159  RH-GLNKELELEEALIDFAYQRNIPLVATNDVFFSNRSDYEAYDILTCISEGSYALENNR 217

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             ++T +HY K+ +EM  +FSD+PEA+ NT+ IA+RCS++ +   PILP+F  +E     K
Sbjct: 218  KKLTTEHYFKSVAEMEELFSDIPEAIYNTLVIAKRCSYMPRSRQPILPKFPCRE----NK 273

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E  ELR +AVAGLE R+A          + Y  RL++EL+VI  M ++GYFLIV+DFI+
Sbjct: 274  TENEELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIR 330

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            W+K N IPVGPGRGSGAGS+ A++L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ+
Sbjct: 331  WSKANGIPVGPGRGSGAGSIVAWSLQITDLDPIKFGLIFERFLNPDRVSMPDFDIDFCQE 390

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            +RD VI YVQ KYG+  VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +
Sbjct: 391  KRDLVIDYVQKKYGY--VAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVN 448

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            PV+L QAI  D   ++ R +D  + +LL+IS KLEG+YRH STHAAGIVI D+ L   VP
Sbjct: 449  PVTLSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVP 508

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +Y D  S LP+TQ++MK++EKAGLIKFDFLGL TLTL+      + +   K D+S +   
Sbjct: 509  VYYDPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDKKKFDISSVSLI 568

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY +L+   ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  R
Sbjct: 569  DQRTYEMLSRGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVAR 628

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G EK   IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIK E
Sbjct: 629  KHGLEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKAE 688

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MDKQ+E F+ GA+KNG+    A  IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +YP
Sbjct: 689  MDKQRELFVQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAIISYQTAYLKANYP 748

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF  A M L +D+ +K+  F   A+   + ++ P ++    +F +G   I Y +AA++ 
Sbjct: 749  LEFFTALMNLNIDDRDKLNLFYHAAKFSGVAVLSPDISKSKAEFSIGGEHIRYGIAALRN 808

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG   A  I+ A +   +  + +F   +    +N+R LESL+ +G  D    +R QL +S
Sbjct: 809  VGFAIAEGIVNARSSS-YKDIWEFIQNL-GHIINKRALESLIKSGTFDSVHKNRKQLYES 866

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +D +  +A    KNR +    +F H       K  LE     N   + E+E   LGFY +
Sbjct: 867  IDTLIYFAN---KNRQSNQAALFGHLDIL---KPKLENVEDFNEEEKLEHELFSLGFYLT 920

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HPL+ ++ +L+K+ I    ES        I+ A ++++ + + + +G R   +T S+P 
Sbjct: 921  NHPLEKFRTLLKKLNIGFIGES------KTIKTAGVILNVRMRTSERG-RFVILTLSDPH 973

Query: 1025 KEYEANFF 1032
               E  F+
Sbjct: 974  NVSEIAFY 981


>gi|307292876|ref|ZP_07572722.1| DNA polymerase III, alpha subunit [Sphingobium chlorophenolicum L-1]
 gi|306880942|gb|EFN12158.1| DNA polymerase III, alpha subunit [Sphingobium chlorophenolicum L-1]
          Length = 1178

 Score =  880 bits (2274), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/1041 (46%), Positives = 648/1041 (62%), Gaps = 31/1041 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L+V SS+++LEGA+    I  +  A   PA AITD N L+ ++ FS      G+QP
Sbjct: 5    GFVPLRVFSSFTMLEGAIDPKKIAKQAKALGFPAAAITDRNGLYGSMAFSDACKGEGVQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG  + +   D          P P    I L    A GY  L  LVS  +L    ++  
Sbjct: 65   VIGAMVGVARPDR-----PANAP-PVHDWIALYAQDAAGYDNLCALVSMAHLERPVEEVP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QR 188
             I L+ L E  T+GLI LT G  G + R F  +    A       + LF DRLY+ + +R
Sbjct: 119  HISLAML-EGRTDGLIALTAGGEGALARLFAEDQPAAALAYAKRLEALFPDRLYIEICRR 177

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E +++ LAY   LPLVATN + F     +EAHDV++ +A S  V   DR   
Sbjct: 178  LDPVEGKAEPELLDLAYARNLPLVATNPTCFAEPHFHEAHDVMLCIADSAYVETPDRRTS 237

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +PD ++K  +EM  +F DLPEAL NT+ +A+RC+       PILP        DI+ E +
Sbjct: 238  SPDAWMKPAAEMKRLFEDLPEALANTLVVAQRCAVAAPKRKPILPSL----AGDIEGEAK 293

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR +A  GLE RLA+  I      + Y  RL FE ++I +M F GYFLIVADFI+WAK
Sbjct: 294  M-LREQAAEGLEARLAKAGIIDEEARKPYFDRLKFETDIIIQMGFPGYFLIVADFIKWAK 352

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              +IPVGPGRGSGAGSV A+ALTITD+DPL+  LLFERFLNP+R+SMPDFDIDFC+ RR 
Sbjct: 353  DQDIPVGPGRGSGAGSVVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFCETRRG 412

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVIRYVQ KYG + VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P  P +
Sbjct: 413  EVIRYVQQKYGADHVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWT 472

Query: 489  LQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L+ ++   + FR     D  V RL++ + KLEG  RH+STHAAG+VIGDRPLSQLVP+YR
Sbjct: 473  LERSLNGVAEFRAEYDNDNQVRRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLSQLVPLYR 532

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++  LA RGV++DL+ + +DD  
Sbjct: 533  DPRSDMPVTQFDMKYVEGAGLVKFDFLGLKTLSVLQKAVQLLAGRGVEIDLNSLGWDDPA 592

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             Y LL    T+G+FQLES GMR+ L  ++P    DIIALVSLYRPGP+DNI ++  RKNG
Sbjct: 593  VYELLQRGDTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDNIPMFGRRKNG 652

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E+I   H L+ P+L+ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKKIK EMD 
Sbjct: 653  QEEIEYPHILLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKIKAEMDA 712

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+ RF+ G +++ I+   A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K HYP EF
Sbjct: 713  QRARFVEGCARSDIATGKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPAEF 772

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDN-----RIY 836
             AASM  ++   +K+  F  D R+  +  + P +N    DF V      GD+      + 
Sbjct: 773  YAASMAFDIHLTDKLTVFVDDMRRMGLACLAPDINRSQADFSVEAIEQEGDDPRLGFAVR 832

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y+L  +KGVG      ++ E  A  PF SL+DF  R++ + LNRR LESL  AGA D   
Sbjct: 833  YALGGLKGVGEKAMEQLVAEREAGGPFKSLDDFADRIEPRLLNRRQLESLAAAGAFDGVY 892

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R  +  + + I   A    + R +    +F   +   +D + +      +++ R   E
Sbjct: 893  ADRAGVHAAAETILSVASSAAEARESGQGGLFGDVETPHAD-VRIPPHQTWSTADRMAQE 951

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGY----EESVATIRGNNIRLAAMVVSKQQKKTRK 1011
            +   GFYFS HP+D Y+ +    G K Y     E VA     N  +AAMV   + ++T++
Sbjct: 952  KDAFGFYFSAHPVDRYRHLAEARGAKSYGAICAEPVAEGGRANGVMAAMVEDVRWRETKR 1011

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G+R    TFS+ + +++A+ F
Sbjct: 1012 GARYAAATFSDSSGQFQASCF 1032


>gi|260753893|ref|YP_003226786.1| DNA polymerase III subunit alpha [Zymomonas mobilis subsp. mobilis
            NCIMB 11163]
 gi|258553256|gb|ACV76202.1| DNA polymerase III, alpha subunit [Zymomonas mobilis subsp. mobilis
            NCIMB 11163]
          Length = 1174

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/1042 (44%), Positives = 645/1042 (61%), Gaps = 33/1042 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L++ S +++LEGA+   +I         PA  I D N L+  + FS      G+QPI
Sbjct: 6    FVPLRIFSGFTMLEGAIEPKDITQHAKKMGFPAAGICDRNGLYGVMTFSDSGKKDGVQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L +         +  +     +P   L     +GY  L  LVS  +L    +    
Sbjct: 66   IGSLLAVARPLRGGEASGQELKIDWLP---LYAQDEDGYNNLCALVSHAHLGRPLELPPH 122

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L++  ++GL+ LTGG  G + R         AE  L   +K+F DRLY+ L R  
Sbjct: 123  VSMEFLEQ-HSQGLLALTGGKEGALARLLAEEQQSEAEAYLTLLQKIFPDRLYIELSRRS 181

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                    + ++ LAY  ++PLVATN   FL  + + AHD ++ +A S  V   DR   +
Sbjct: 182  EEIEEAAEEGLIDLAYDRDIPLVATNPVCFLEADFHPAHDAMLCIADSAYVDSPDRRHSS 241

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI-EKECDDIQKEEE 308
            P+ ++K+  EM  +F D+PEA++N++ IA+RC+    V  PILP    ++E + +     
Sbjct: 242  PEAWMKSGEEMARLFEDIPEAIQNSLVIAQRCAVAAPVRKPILPSLAGDREGETLM---- 297

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR  A AGLE RLA  A+      + Y +RL +ELN+I  M F GYFLIVADFI+WAK
Sbjct: 298  --LRKDAWAGLEARLA--AMTTPVDRKAYEERLQYELNIIENMGFPGYFLIVADFIKWAK 353

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N IPVGPGRGSGAGSV A+ALTIT++DPLR  LLFERFLNP+R+SMPDFDIDFC+ RR 
Sbjct: 354  SNQIPVGPGRGSGAGSVVAWALTITNLDPLRLGLLFERFLNPERVSMPDFDIDFCETRRS 413

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YVQ+KYG + VAQIITFG ++A+A L+D GR LQM Y QVDRL KL+P+  + P +
Sbjct: 414  EVISYVQHKYGLDHVAQIITFGRMKARAVLKDTGRVLQMSYGQVDRLAKLVPSQASDPWT 473

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L +A+        A   +  V RLL+++ KLEGL RH+STHAAG+VIGDRPL QLVP+YR
Sbjct: 474  LDRALNGVPEIASAYENEEDVHRLLDLAMKLEGLPRHSSTHAAGVVIGDRPLHQLVPLYR 533

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D RSD PVTQF+MK++EK GL+KFDFLGLKTL++L K++  L  RGV+VDL  IP DD  
Sbjct: 534  DPRSDFPVTQFDMKYVEKTGLVKFDFLGLKTLSVLNKAVQMLKARGVEVDLDHIPLDDEA 593

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             + LL    T+G+FQLES GMR+ L  ++P   EDIIALV+LYRPGP+DNI  +  RKNG
Sbjct: 594  VFELLKQGDTVGVFQLESEGMRRTLAAVKPTRFEDIIALVALYRPGPMDNIPSFGARKNG 653

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E+IV  HPL++P+LKET G+I+YQEQVMQ AQ+L+GYSL EAD+LRRAMGKKI+ EMD 
Sbjct: 654  GEEIVYPHPLLEPVLKETYGIIVYQEQVMQAAQVLAGYSLGEADLLRRAMGKKIQSEMDA 713

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+ RF+ G+ K+ I++  A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K HY  EF
Sbjct: 714  QRSRFVEGSKKHDITENQANQLFDLIDKFAGYGFNKSHAAAYALVAYQTAWLKAHYRAEF 773

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             AA+M  +M   +K++ F  D R+  ++ +PP +N    DF V D  + Y+L A+KGVG 
Sbjct: 774  YAAAMCFDMALTDKLQVFVDDMRRSGLRYLPPDINRSQSDFTVEDGCVRYALGALKGVGE 833

Query: 848  TTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 I  E   +  F SL+DF +R++ + LNRR LESL  AGA D  G  R  + QS +
Sbjct: 834  KAMDDICQEREKNGAFKSLDDFANRINPEHLNRRQLESLASAGAFDSLGVDRCAVKQSSE 893

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             I   A  + + R +    +F  E+      I L +  + + + R   E+   GF+FS H
Sbjct: 894  MIIGTAANIHRMRKSGQGGLFGMEEMAMP-SIKLPEDKIWSLTERMNAEKEAFGFFFSSH 952

Query: 967  PLDVYKPILRKMGIKGY--------------EESVATIRGNNI--RLAAMVVSKQQKKTR 1010
            P+D Y+ +L  + I+                +E+    R   I  ++AAM+   + + + 
Sbjct: 953  PIDNYRSLLSGLRIRSRADINRLAPPSYPQDDENPQDYRKKRIATQMAAMIEDVRWRDSA 1012

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G R   V  S+ + ++ A+ F
Sbjct: 1013 RGRRYMMVAASDASGQFFASCF 1034


>gi|283856496|ref|YP_163273.2| DNA polymerase III subunit alpha [Zymomonas mobilis subsp. mobilis
            ZM4]
 gi|283775500|gb|AAV90162.2| DNA polymerase III, alpha subunit [Zymomonas mobilis subsp. mobilis
            ZM4]
          Length = 1174

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/1042 (44%), Positives = 644/1042 (61%), Gaps = 33/1042 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L++ S +++LEGA+   +I         PA  I D N L+  + FS      G+QPI
Sbjct: 6    FVPLRIFSGFTMLEGAIEPKDITQHAKKMGFPAAGICDRNGLYGVMTFSDSGKKDGVQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L +         +  +     +P   L     +GY  L  LVS  +L    +    
Sbjct: 66   IGSLLAVARPLRGGEASGQELKIDWLP---LYAQDEDGYNNLCALVSHAHLGRPLELPPH 122

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L++  ++GL+ LTGG  G + R         AE  L   +K+F DRLY+ L R  
Sbjct: 123  VSMEFLEQ-HSQGLLALTGGKEGALARLLAEEQQSEAEAYLTLLQKIFPDRLYIELSRRS 181

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                    + ++ LAY   +PLVATN   FL  + + AHD ++ +A S  V   DR   +
Sbjct: 182  EEIEEAAEEGLIDLAYDRNIPLVATNPVCFLEADFHPAHDAMLCIADSAYVDSPDRRHSS 241

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI-EKECDDIQKEEE 308
            P+ ++K+  EM  +F D+PEA++N++ IA+RC+    V  PILP    ++E + +     
Sbjct: 242  PEAWMKSGEEMARLFEDIPEAIQNSLVIAQRCAVAAPVRKPILPSLAGDREGETLM---- 297

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR  A AGLE RLA  A+      + Y +RL +ELN+I  M F GYFLIVADFI+WAK
Sbjct: 298  --LRKDAWAGLEARLA--AMTTPVDRKAYEERLQYELNIIENMGFPGYFLIVADFIKWAK 353

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N IPVGPGRGSGAGSV A+ALTIT++DPLR  LLFERFLNP+R+SMPDFDIDFC+ RR 
Sbjct: 354  SNQIPVGPGRGSGAGSVVAWALTITNLDPLRLGLLFERFLNPERVSMPDFDIDFCETRRS 413

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YVQ+KYG + VAQIITFG ++A+A L+D GR LQM Y QVDRL KL+P+  + P +
Sbjct: 414  EVISYVQHKYGLDHVAQIITFGRMKARAVLKDTGRVLQMSYGQVDRLAKLVPSQASDPWT 473

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L +A+        A   +  V RLL+++ KLEGL RH+STHAAG+VIGDRPL QLVP+YR
Sbjct: 474  LDRALNGVPEIASAYENEEDVHRLLDLAMKLEGLPRHSSTHAAGVVIGDRPLHQLVPLYR 533

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D RSD PVTQF+MK++EK GL+KFDFLGLKTL++L K++  L  RGV+VDL  IP DD  
Sbjct: 534  DPRSDFPVTQFDMKYVEKTGLVKFDFLGLKTLSVLNKAVQMLKARGVEVDLDHIPLDDEA 593

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             + LL    T+G+FQLES GMR+ L  ++P   EDIIALV+LYRPGP+DNI  +  RKNG
Sbjct: 594  VFELLKQGDTVGVFQLESEGMRRTLAAVKPTRFEDIIALVALYRPGPMDNIPSFGARKNG 653

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E+IV  HPL++P+LKET G+I+YQEQVMQ AQ+L+GYSL EAD+LRRAMGKKI+ EMD 
Sbjct: 654  GEEIVYPHPLLEPVLKETYGIIVYQEQVMQAAQVLAGYSLGEADLLRRAMGKKIQSEMDA 713

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+ RF+ G+ K+ I++  A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K HY  EF
Sbjct: 714  QRSRFVEGSKKHDITENQANQLFDLIDKFAGYGFNKSHAAAYALVAYQTAWLKAHYRAEF 773

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             AA+M  +M   +K++ F  D R+  ++ +PP +N    DF V D  + Y+L A+KGVG 
Sbjct: 774  YAAAMCFDMALTDKLQVFVDDMRRSGLRYLPPDINRSQSDFTVEDGCVRYALGALKGVGE 833

Query: 848  TTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 I  E   +  F SL+DF +R++ + LNRR LESL  AGA D  G  R  + QS +
Sbjct: 834  KAMDDICQEREKNGAFKSLDDFANRINPEHLNRRQLESLASAGAFDSLGVDRCAVKQSSE 893

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             I   A  + + R +    +F  E+      I L +  + + + R   E+   GF+FS H
Sbjct: 894  MIIGTAANIHRMRKSGQGGLFGMEEMAMP-SIKLPEDKIWSLTERMNAEKEAFGFFFSSH 952

Query: 967  PLDVYKPILRKMGIKGY--------------EESVATIRGNNI--RLAAMVVSKQQKKTR 1010
            P+D Y+ +L  + I+                +E+    R   I  ++AAM+   + + + 
Sbjct: 953  PIDNYRSLLSSLRIRSRADINRLAPPSYPQDDENPQDYRKKRIATQMAAMIEDVRWRDSA 1012

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G R   V  S+ + ++ A+ F
Sbjct: 1013 RGRRYMMVAASDASGQFFASCF 1034


>gi|241761529|ref|ZP_04759616.1| DNA polymerase III, alpha subunit [Zymomonas mobilis subsp. mobilis
            ATCC 10988]
 gi|241373837|gb|EER63370.1| DNA polymerase III, alpha subunit [Zymomonas mobilis subsp. mobilis
            ATCC 10988]
          Length = 1174

 Score =  871 bits (2251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/1044 (44%), Positives = 647/1044 (61%), Gaps = 37/1044 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L++ S +++LEGA+   +I         PA  I D N L+  + FS      G+QPI
Sbjct: 6    FVPLRIFSGFTMLEGAIEPKDITQHAKKMGFPAAGICDRNGLYGVMTFSDSGKKDGVQPI 65

Query: 71   IGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IG  L +   ++       + K  +     + L     +GY  L  LVS  +L    +  
Sbjct: 66   IGSLLAVARPLRGGEASGQELKIDW-----LSLYAQDEDGYNNLCALVSHAHLGRPLELP 120

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              + + +L++  ++GL+ LTGG  G + R         AE  L   +K+F DRLY+ L R
Sbjct: 121  PHVSMEFLEQ-HSQGLLALTGGKEGALARLMAEEQQSEAEAYLTLLQKIFPDRLYIELSR 179

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                      + ++ LAY  ++PLVATN   FL  + + AHD ++ +A S  V   DR  
Sbjct: 180  RSEEIEEAAEEGLIDLAYDRDIPLVATNPVCFLEADFHPAHDAMLCIADSAYVDSPDRRH 239

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI-EKECDDIQKE 306
             +P+ ++K+  EM  +F D+PEA++N++ +A+RC+    V  PILP    ++E + +   
Sbjct: 240  SSPEAWMKSGEEMARLFEDIPEAIQNSLVVAQRCAVAAPVRKPILPSLAGDREGETLM-- 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR  A AGLE RLA  A+      + Y +RL +ELN+I  M F GYFLIVADFI+W
Sbjct: 298  ----LRKDAWAGLEARLA--AMTTPVDRKAYEERLQYELNIIENMGFPGYFLIVADFIKW 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N IPVGPGRGSGAGSV A+ALTIT++DPLR  LLFERFLNP+R+SMPDFDIDFC+ R
Sbjct: 352  AKSNQIPVGPGRGSGAGSVVAWALTITNLDPLRLGLLFERFLNPERVSMPDFDIDFCETR 411

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YVQ+KYG + VAQIITFG ++A+A L+D GR LQM Y QVDRL KL+P+  + P
Sbjct: 412  RSEVISYVQHKYGLDHVAQIITFGRMKARAVLKDTGRVLQMSYGQVDRLAKLVPSQASDP 471

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +L +A+        A   +  V RLL+++ KLEGL RH+STHAAG+VIGDRPL QLVP+
Sbjct: 472  WTLDRALNGVPEIASAYENEEDVHRLLDLAMKLEGLPRHSSTHAAGVVIGDRPLHQLVPL 531

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD RSD PVTQF+MK++EK GL+KFDFLGLKTL++L K++  L  RGV+VDL  IP DD
Sbjct: 532  YRDPRSDFPVTQFDMKYVEKTGLVKFDFLGLKTLSVLNKAVQMLKARGVEVDLDHIPLDD 591

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
               + LL    T+G+FQLES GMR+ L  ++P   EDIIALV+LYRPGP+DNI  +  RK
Sbjct: 592  EAVFELLKQGDTVGVFQLESEGMRRTLAAVKPTRFEDIIALVALYRPGPMDNIPSFGARK 651

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG E+IV  HPL++P+LKET G+I+YQEQVMQ AQ+L+GYSL EAD+LRRAMGKKI+ EM
Sbjct: 652  NGGEEIVYPHPLLEPVLKETYGIIVYQEQVMQAAQVLAGYSLGEADLLRRAMGKKIQSEM 711

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D Q+ RF+ G+ K+ I++  A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K HY  
Sbjct: 712  DAQRSRFVEGSKKHDITENQANQLFDLIDKFAGYGFNKSHAAAYALVAYQTAWLKAHYRA 771

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF AA+M  +M   +K++ F  D R+  ++ +PP +N    DF V D  + Y+L A+KGV
Sbjct: 772  EFYAAAMCFDMALTDKLQVFVDDMRRSGLRYLPPDINRSQSDFTVEDGCVRYALGALKGV 831

Query: 846  GTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            G      I  E   +  F SL+DF +R++ + LNRR LESL  AGA D  G  R  + QS
Sbjct: 832  GEKAMDDICQEREKNGAFKSLDDFANRINPEHLNRRQLESLASAGAFDSLGVDRCAVKQS 891

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
             + I   A  + + R +    +F  E+      I L +  + + + R   E+   GF+FS
Sbjct: 892  SEMIIGTAANIHRMRKSGQGGLFGMEEMAMP-SIKLPEDKIWSLTERMNAEKEAFGFFFS 950

Query: 965  GHPLDVYKPILRKMGIKGY--------------EESVATIRGNNI--RLAAMVVSKQQKK 1008
             HP+D Y+ +L  + I+                +E+    R   I  ++AAM+   + + 
Sbjct: 951  SHPIDNYRSLLSGLRIRSRADINRLAPPSYPQDDENPQDYRKKRIATQMAAMIEDVRWRD 1010

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            + +G R   V  S+ + ++ A+ F
Sbjct: 1011 SARGRRYMMVAASDASGQFFASCF 1034


>gi|148555255|ref|YP_001262837.1| DNA polymerase III subunit alpha [Sphingomonas wittichii RW1]
 gi|148500445|gb|ABQ68699.1| DNA polymerase III, alpha subunit [Sphingomonas wittichii RW1]
          Length = 1155

 Score =  870 bits (2249), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/1036 (45%), Positives = 635/1036 (61%), Gaps = 30/1036 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L++ S+Y++LEGA+    I         PA A+TD N L++A+ FS  A   G+QP
Sbjct: 5    SFVPLRIFSAYTMLEGAIDPKAIAKHAKKLGFPAAALTDRNGLYAAMAFSDGAKKEGVQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG  L I      ++          +  + L      GY  L  LVS  +L     +  
Sbjct: 65   VIGTMLAIRRPGIDQLI---------IDWLALYAQDMTGYDNLCALVSAAHLERPVHEDA 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + LS L E  T+GLI LT G  G + R      +  A       + LF  RLYV L R 
Sbjct: 116  HVPLSAL-EGRTDGLIALTAGGEGALTRLLAAEQAGAAASYADKLEALFPGRLYVELAR- 173

Query: 190  RG--YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RG   +   E  ++ LAY   LPLVATN + F   E + AHD ++ +A S+ +   +RPR
Sbjct: 174  RGNADEEAAEEALIDLAYARNLPLVATNPACFAEPEFHAAHDAMLCIASSSYIDTAERPR 233

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +PD ++K  +EM  +F D+PEAL NT+ +A+RC+       PILP        D + E 
Sbjct: 234  SSPDLWMKPAAEMAKLFEDIPEALANTLVVAQRCAVAAPYRKPILPSL----AGDREGEA 289

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E  LR  A  GLE+RL +  +      Q Y  RL FE  +I +M F GYFLIVADFI+WA
Sbjct: 290  EA-LRRDAREGLEMRLEKLGVTDAEQRQAYFDRLAFETEIIIKMGFPGYFLIVADFIKWA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K ++IPVGPGRGSGAGSV A+ALTITD+DPLR  LLFERFLNP+R+SMPDFDIDFC+ RR
Sbjct: 349  KDHDIPVGPGRGSGAGSVVAWALTITDLDPLRLGLLFERFLNPERVSMPDFDIDFCETRR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVIRYVQ KYG ++VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P  P 
Sbjct: 409  GEVIRYVQEKYGRDQVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPW 468

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L +A+            D  V RLL+++ KLEGL RH+STHAAG+VIGDR L  LVP+Y
Sbjct: 469  TLDRALNGVPELAAEYKGDIEVRRLLDLAMKLEGLPRHSSTHAAGVVIGDRRLDALVPLY 528

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            RD RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++ FL QRG+ VDL  +P+DD 
Sbjct: 529  RDPRSDMPVTQFDMKFVEGAGLVKFDFLGLKTLSVLQKAVQFLNQRGIAVDLDSLPWDDP 588

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            E Y LL    T+G+FQLES GMR+ L  ++P C EDIIALVSLYRPGP+DNI  +  RKN
Sbjct: 589  EVYALLQRGDTVGVFQLESEGMRRTLAAVRPTCFEDIIALVSLYRPGPMDNIPTFGARKN 648

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E+I   HPL++ +LKET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKKIK EMD
Sbjct: 649  GREEIEYPHPLLEGILKETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKIKAEMD 708

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+ RF+ G + N I+   A  +F+L+ KFA YGFNKSHAAAYA+++Y TAW+K H+  E
Sbjct: 709  AQRSRFVEGCAANDIAAAKANELFDLIDKFAGYGFNKSHAAAYALVAYHTAWLKAHHKAE 768

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIY--YSLAAI 842
            F AASM  +M   +K+  F  D R+  IQ + P +N    +F V   D  ++  Y+L A+
Sbjct: 769  FYAASMCYDMAQTDKLAIFIDDMRRMGIQCLGPCINHSEAEFAVEQQDEELFVRYALGAL 828

Query: 843  KGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGVG      ++EA  A  PF SLEDF  R+D ++LNRR LESL   GA D     R  +
Sbjct: 829  KGVGEKAMEQLVEARKAKGPFGSLEDFADRIDPRQLNRRQLESLAGGGAFDEIETERAGI 888

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
              S + I  +A    + R +    +F       +  I +++      + R   E+   GF
Sbjct: 889  FASAELILAHASSAAEQRESGQGGLFGDSPAALA-PIRIDRGLHWTLADRMAAEKESFGF 947

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESV---ATIRGNNIR--LAAMVVSKQQKKTRKGSRIG 1016
            YFS HP D  + +    G + +       A + G  +   ++A++   + + + KG R  
Sbjct: 948  YFSSHPTDQVRHLAEANGARSFAALCALPAPVDGGRVNSVMSALIEDARWRTSAKGKRYM 1007

Query: 1017 WVTFSEPAKEYEANFF 1032
              T S+ + ++ A  F
Sbjct: 1008 MATCSDSSGQFIATCF 1023


>gi|262277280|ref|ZP_06055073.1| DNA polymerase III subunit alpha [alpha proteobacterium HIMB114]
 gi|262224383|gb|EEY74842.1| DNA polymerase III subunit alpha [alpha proteobacterium HIMB114]
          Length = 1139

 Score =  864 bits (2233), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/1046 (43%), Positives = 679/1046 (64%), Gaps = 45/1046 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S   ++L++HS +S+ EGA+ ++ +++        A+ + D+ NL  ALEFS +    GI
Sbjct: 2    SAEAINLKIHSQFSICEGAIKIDKLVNYCKEHSVTAVGLCDSENLSGALEFSSQLKKEGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGK 126
            QP+IG ++ I      K    GK  + T     L      GY+ L++L S+ YL L +  
Sbjct: 62   QPLIGTKIYI------KENVDGKITYGTAS---LYAKNQIGYKNLLKLSSKSYLDLQEHD 112

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I L+ L++   EG+I+L GGS          N  +     +   K +F D +Y+ +
Sbjct: 113  DKPNINLNILKKY-HEGIIILIGGSFSFFSDLLVKNKDEYCFNEVKKLKDIFNDNIYIEI 171

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH   +++  E ++++L+    +PL+ATN   +L ++ Y AHD  + V     V++K+R
Sbjct: 172  QRHNESHEKQLEKKLIKLSSDTSIPLIATNEVFYLEQDSYNAHDAFICVGEKNYVNEKNR 231

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + +  HY K  SE  ++F+DLP+ALEN      + ++  +   P+LP F E   D  Q 
Sbjct: 232  LKYSNQHYFKKTSEFENLFADLPDALENNKNFKYKFNYFPKKSNPLLPSFSENGKDTNQI 291

Query: 306  EEENELRNKAVAGLEVRLAQ------GAIA-KGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                 L++KA  GLE RL +      GA   K    ++Y  RL++E+NVI++MKFSGYFL
Sbjct: 292  -----LKDKAEKGLEERLEKYVYPRLGATTDKDEIKKNYFDRLNYEVNVISKMKFSGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV+D+I WAK NNIPVGPGRGSGAGS+ A+ L+ITD+DP+RF L+FERFLNPDR+SMPDF
Sbjct: 347  IVSDYINWAKSNNIPVGPGRGSGAGSLVAWCLSITDLDPIRFGLIFERFLNPDRISMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFCQ+ RDEVI YV++KY + +VAQIITFG LQA+ ALRD+GR L +PY +VD+LCK+
Sbjct: 407  DIDFCQEGRDEVINYVKDKYPN-KVAQIITFGKLQARMALRDIGRVLGLPYGRVDQLCKM 465

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP DP+ P+SL ++IA + R +EA   DP + +L+  + KLEGLYR+ +THAAG+VIGDR
Sbjct: 466  IPFDPSRPLSLAESIAIEPRLQEAEKNDPIIKKLINYALKLEGLYRNVATHAAGVVIGDR 525

Query: 538  PLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
             L ++VP+Y+D+ S LP  VTQF+MK  E+AGL+KFDFLGLKTLT+++K+++F+ +    
Sbjct: 526  NLDEIVPLYKDLSSTLPIPVTQFDMKSSEEAGLVKFDFLGLKTLTVIKKTIEFIQKDKAD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             D+S I   D +T+ LL++  T+GIFQLESSGMR+ L+ ++P+  EDIIALV+LYRPGP+
Sbjct: 586  FDISKINLSDQKTFELLSSGETMGIFQLESSGMREVLKQLKPNKFEDIIALVALYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             NI  Y +RK+ KE++  IHP ++ +LKET GVIIYQEQVMQIAQ LS +S S+AD+LR+
Sbjct: 646  QNIPTYISRKHEKEEVDYIHPKLENILKETYGVIIYQEQVMQIAQALSSFSASKADILRK 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM++QK+ FI GA KNGIS+   + IF+L+ KFA YGFNKSHAAAYA+I++Q
Sbjct: 706  AMGKKKSVEMERQKKDFIDGAVKNGISRDQVIYIFQLVEKFAQYGFNKSHAAAYALIAFQ 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++KTHYP+ F  ASM  E+ N +K+  F ++ ++  I I PP++N    +F   D  I
Sbjct: 766  TAYLKTHYPIYFFCASMNTELSNTDKLNLFYEELKRLKIDIRPPNINFSYAEFLPRDKTI 825

Query: 836  YYSLAAIKGVG-TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            YY+L+A+K VG  T ++ + E   +  F+S+ +F SRV+SK LN+  LE L+ +G+LD  
Sbjct: 826  YYALSAVKAVGYDTISKIVYEREKNGKFNSISEFLSRVESKNLNKLQLEGLIKSGSLDIL 885

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV----ENSSV 950
              +R +L +++    K ++  +K   N+ + +F++E    +D+  +++F++    +N  +
Sbjct: 886  DNNRKKLFENVPEYIKQSKSSDKVNDNEQDQLFSNEME--NDQTNIQEFNILDWDKNEKI 943

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV----VSKQQ 1006
            + E E   +GF+   HPL     +L+K  +  ++E    ++ NN    AM+    +S Q+
Sbjct: 944  KKEFES--IGFFVGEHPLKSNLQVLKKYNVSSHQE----LKNNNALKDAMIAGTLISIQE 997

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            KKT KG+    +   +    YE   F
Sbjct: 998  KKTAKGNPYAIIKLVDLGSMYELFIF 1023


>gi|68171940|ref|ZP_00545254.1| DNA polymerase III alpha subunit [Ehrlichia chaffeensis str. Sapulpa]
 gi|67998637|gb|EAM85376.1| DNA polymerase III alpha subunit [Ehrlichia chaffeensis str. Sapulpa]
          Length = 1074

 Score =  856 bits (2212), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/989 (46%), Positives = 647/989 (65%), Gaps = 52/989 (5%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            +LEFS  A + G+QPIIGC        N+ M+  G +    +  +VLLV    GY  ++ 
Sbjct: 3    SLEFSDYASSLGVQPIIGC--------NIMMSYNGDS----IGELVLLVKDQIGYNNIVN 50

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLL 172
            LVS  +   Q  +  R+ L  L ++  +G+I+LTGG  G + +    N     + +K LL
Sbjct: 51   LVSNSFKDSQSNKVNRVDLEKLIDL-KDGIIVLTGGHDGFLSQLLLGNVIDYGIIDKLLL 109

Query: 173  TFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             F       LYV LQRH    ++  E  +V  AY  +LPLVATN+ LF  + D+ AHDVL
Sbjct: 110  AFNG----NLYVELQRHGMEEEKIIEKTLVNFAYEKDLPLVATNDVLFAKKNDFLAHDVL 165

Query: 232  MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
              ++    ++Q+ R   T +HY K+  EM  +F D+PEA+ NTV IA+RCSF+ +   P+
Sbjct: 166  SCISDGNYIAQEGRKMFTEEHYFKSSDEMYRLFKDIPEAVSNTVLIAQRCSFMPETRKPM 225

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            LP F    C    K E  EL ++A+ GL+ RL   +++       Y +RL +EL++I  M
Sbjct: 226  LPHF---PCSS-GKNESQELISQAINGLDNRLKSKSLSTE-QVSKYYERLHYELDIIISM 280

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             ++GYFLIV+DFI W+K+N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPD
Sbjct: 281  DYAGYFLIVSDFICWSKRNDIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPD 340

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPDFDIDFCQ++RD VI YV+ KYG+  VA IITFG LQAKA LRDVGR +QMPY Q
Sbjct: 341  RISMPDFDIDFCQEKRDYVIEYVRKKYGY--VAHIITFGKLQAKAVLRDVGRVMQMPYFQ 398

Query: 472  VDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            VDR+CK+IP++P  PV+L +AI  D   ++ +  D +V +LLEIS KLEGLYRH S HAA
Sbjct: 399  VDRICKMIPHNPVKPVTLSEAIEMDKNLQKEQDDDETVAKLLEISLKLEGLYRHVSIHAA 458

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI DR L +L+P+Y D  S LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ +    + 
Sbjct: 459  GIVICDRELEELLPLYYDSTSSLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICHLVN 518

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            + G  VD+S IP +D +TY +L+   ++G+FQLESSGMR+ +  ++PD I DIIAL+SLY
Sbjct: 519  RGGHSVDISRIPLNDRKTYEMLSAGDSVGVFQLESSGMREVISKLKPDNINDIIALISLY 578

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+DNI +Y  RK+G EK   IHP+++ +L+ET GVIIYQEQVM+IA++++GYSL EA
Sbjct: 579  RPGPMDNISIYIARKHGFEKPDYIHPILEDVLRETFGVIIYQEQVMEIAKIMAGYSLGEA 638

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIKEEMD Q+  FI+GA  NGI +  A  IF+L+AKFA YGFNKSHAAAYA
Sbjct: 639  DLLRRAMGKKIKEEMDNQRRTFINGAVSNGIEEEKASYIFDLVAKFAGYGFNKSHAAAYA 698

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +ISYQTA++K +Y +EF  ASM L++ + +K++  C  A+   I+I+PP +N+  V F +
Sbjct: 699  LISYQTAYLKANYTLEFFTASMNLDIMDKDKLEMLCHQAKLHGIEILPPDINSSKVLFTI 758

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             G + I Y+L A+K VG  +A+ I++   D  +  + DF  RV +K +++R+LES++ AG
Sbjct: 759  EGASSIRYALGALKNVGQHSAKEIVD---DVAYKDIWDFIDRVSTKCVHKRILESIIKAG 815

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA------HEKGTFSDKITLEKF 943
             LD    +R QL +S   +  +   +E N+ N + N F+      H K + +D  T E+ 
Sbjct: 816  VLDSIHSNRKQLFES---VFLFLDIIEYNKYNANFNQFSLFNDKNHYKLSETDDWTKEE- 871

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                   +  NE   +GFY + HP++ YK +L K+ I G+         NN+ +   ++S
Sbjct: 872  -------KLNNEFSSIGFYLNHHPMENYKYLLDKLNI-GFIHYDDKSSYNNVIVG--IIS 921

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + ++    +   VT S+P   +E  F+
Sbjct: 922  NVKVRSTNKDKFAVVTLSDPFNIHEIVFY 950


>gi|94498252|ref|ZP_01304812.1| DNA polymerase III, alpha subunit [Sphingomonas sp. SKA58]
 gi|94422254|gb|EAT07295.1| DNA polymerase III, alpha subunit [Sphingomonas sp. SKA58]
          Length = 1181

 Score =  852 bits (2201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/1046 (45%), Positives = 638/1046 (60%), Gaps = 37/1046 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L++ SS+++LEGA+    I  +  A   PA AITD N L+ ++ FS      G+QP
Sbjct: 5    AFVPLRIFSSFTMLEGAIDPKKIAKQARALGFPAAAITDRNGLYGSMAFSDACKGEGVQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L +          Q          I L    A GY  +  LVS  +L    ++  
Sbjct: 65   IIGAMLGVLRPGRPANAAQ------VHDWITLYAQDARGYDNICALVSMAHLDRPVEEVP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QR 188
             + L  L E  T+G+I LT G  G + R F  +    A       + LF DRLYV + +R
Sbjct: 119  HVTLDAL-EGRTDGVIALTAGGEGALARLFAEDQPDAALAYAERLEALFPDRLYVEICRR 177

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E+ ++ LAY   LPLVATN + F     +EAHDV++ +A S  V   DR + 
Sbjct: 178  LDPVEGKAEAALLDLAYDRGLPLVATNPTCFTEPHFHEAHDVMLCIADSAYVDTADRRKS 237

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +PD ++K  +EM  +F DLPEAL NT+ +A+RC+       PILP        DI+ E  
Sbjct: 238  SPDAWMKPAAEMKRLFEDLPEALANTLVVAQRCAVAAPKRKPILPSL----AGDIEGEAA 293

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR++A  GLE RL +  I      + Y +RL FE ++I +M F GYFLIVADFI+WAK
Sbjct: 294  M-LRDQAAEGLEARLEKAGILGEEMRRPYYERLKFETDIIIQMGFPGYFLIVADFIKWAK 352

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            + +IPVGPGRGSGAGS+ A+ALTITD+DPL+  LLFERFLNP+R+SMPDFDIDFC+ RR 
Sbjct: 353  EQDIPVGPGRGSGAGSLVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFCETRRG 412

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVIRYVQ KYG + VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P  P +
Sbjct: 413  EVIRYVQQKYGADHVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWT 472

Query: 489  LQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L+ ++   S F+     D  V RL++ + KLEG  RH+STHAAG+VIGDRPLSQLVP+YR
Sbjct: 473  LERSLNGVSEFKAEYDNDNQVKRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLSQLVPLYR 532

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++  L+ RGV VDL  + +DD  
Sbjct: 533  DPRSDMPVTQFDMKYVEGAGLVKFDFLGLKTLSVLQKAVQLLSARGVTVDLDTLAWDDTA 592

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             Y LL    T+G+FQLES GMR+ L  ++P    DIIALVSLYRPGP+DNI ++  RKNG
Sbjct: 593  VYDLLQRGDTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDNIPMFGRRKNG 652

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E I   H L+ P+L+ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKKIK EMD 
Sbjct: 653  QEDIEYPHILLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKIKAEMDA 712

Query: 728  QKERFISG-ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            Q+ RF+ G A+K+ I    A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K HYP E
Sbjct: 713  QRARFVEGCAAKSDIPAAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPAE 772

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------GDNR----I 835
            F A SM  ++   EK+  F  D R+  +  + P +N    DF V        D R    +
Sbjct: 773  FYAGSMAFDIHLTEKLTVFVDDMRRMGLTCLAPDINRSEADFTVEPVAYEGEDARLGFAV 832

Query: 836  YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y+L  +KGVG      ++E  +    F SL+DF  R++ + LNRR LESL  AGA D  
Sbjct: 833  RYALGGLKGVGEKAMEQLVEERNKGGAFKSLDDFADRIEPRLLNRRQLESLAAAGAFDGI 892

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
               R  +  + + I   A      R +    +F   +   +D + +        + R   
Sbjct: 893  HADRAGVHAAAETILSVASSNAAARESGQGGLFGDVETPHAD-VRIPPHQAWTVADRMAQ 951

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGY--------EESVATIRGNNIRLAAMVVSKQQ 1006
            E+   GFYFS HP+D YK +    G + Y            A  R   I +AAMV   + 
Sbjct: 952  EKEAFGFYFSAHPVDRYKHLADARGARSYGLICQSPMPAPNAEGRAMTI-MAAMVEDVRW 1010

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++T++G+R    TFS+ + +++A+ F
Sbjct: 1011 RETKRGARYASATFSDQSGQFQASCF 1036


>gi|330814006|ref|YP_004358245.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter sp.
            IMCC9063]
 gi|327487101|gb|AEA81506.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter sp.
            IMCC9063]
          Length = 1140

 Score =  850 bits (2197), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/1035 (43%), Positives = 671/1035 (64%), Gaps = 31/1035 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F H +VH+ YS+ EGAL + ++     ++   ++ I+D+ N+   LEFSQ+   AG QPI
Sbjct: 7    FNHFKVHTQYSICEGALKIVDLAVHCTSNNVASVGISDSFNMCGVLEFSQEISKAGCQPI 66

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG Q++    +N  +   GK        I L+     GY+ L++L S  YL  +  +   
Sbjct: 67   IGTQINFSFSEN-NLEKMGK--------ISLVAKNDTGYKNLLKLSSSSYLSIEKNEDPH 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              +  L +  ++GLI+L G S   +      N+   +E  L   +K F   LY+ +QRH 
Sbjct: 118  CDIQELID-NSDGLIVLVGASHSLLSSLVLENNILDSELLLQKIQKFFEGNLYIEIQRHN 176

Query: 191  G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              +++  E+Q++  +    +P++AT+   +L ++ YEAHD  + V   T V+   R R +
Sbjct: 177  EPHEQALETQLLYFSEKFSIPIIATHEVFYLKKDMYEAHDAYICVGQKTYVNDIKRLRYS 236

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +HY K+  EM  +F DLPEALEN   +A RCS+      P+LP F   E  ++     +
Sbjct: 237  EEHYFKSDYEMSELFLDLPEALENNKNLALRCSYRPLTSKPMLPNF-NTESSNVN----D 291

Query: 310  ELRNKAVAGLEVRLAQGAI-------AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            EL+  A  GLE RL    +        +    Q Y++RL++E+ +I++MKFSGYFLIV+D
Sbjct: 292  ELKINANKGLEDRLKNFILINIADEDQRLATKQVYKERLNYEIEMISKMKFSGYFLIVSD 351

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I+WAK NNIPVGPGRGSGAGS+ A+ L+ITD+DP++F L+FERFLNPDR+SMPDFDIDF
Sbjct: 352  YIKWAKSNNIPVGPGRGSGAGSLVAWCLSITDLDPIKFGLIFERFLNPDRISMPDFDIDF 411

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ+ RD+VI YV++KY + +VAQIITFG LQA+ ALRD+GR + +PY +VD+L K+IP D
Sbjct: 412  CQEDRDKVINYVKDKYKN-KVAQIITFGKLQARMALRDIGRVIGLPYGRVDQLSKMIPFD 470

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P+ P++L +++A + R +EA+  DP++++L+ ++ KLEGL+R+ +THAAGIVIGD+ L++
Sbjct: 471  PSRPLTLAESVAMEPRLQEAQKEDPTIEKLINLALKLEGLFRNIATHAAGIVIGDKNLTE 530

Query: 542  LVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +VP+Y+D  S +P  VTQF+M W E+AGL+KFDFLGLKTLT+++K+++ + +   K+D+ 
Sbjct: 531  IVPLYKDHDSSIPIPVTQFDMNWSEQAGLVKFDFLGLKTLTVIKKTIELIEKDSQKLDIE 590

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +T+ LL++  T+GIFQLES+GMR+ L+ M P+  EDIIALV+LYRPGP+ NI 
Sbjct: 591  KIPLDDSKTFELLSSGETMGIFQLESAGMREVLKQMIPNKFEDIIALVALYRPGPMQNIP 650

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             YNNRK+G E+   +HP I+ +LKET GVIIYQEQVMQIAQ LSG+S  +AD+LR+AMGK
Sbjct: 651  SYNNRKHGLEEPDYLHPKIENILKETYGVIIYQEQVMQIAQALSGFSAGKADILRKAMGK 710

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K   EMD+QK+ FI GA KN I K  AV IF+L+ KFA YGFNKSHAAAYA+I+YQTA++
Sbjct: 711  KKSAEMDRQKKDFIEGAIKNDIPKEQAVYIFQLVEKFAQYGFNKSHAAAYALIAYQTAYL 770

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            KTHYP+ F +ASM++EM N +K+ +F ++ ++ +I++  P +N    DF   D  I+Y+L
Sbjct: 771  KTHYPLSFFSASMSMEMSNTDKLNQFYEELKRLSIKVHNPCINHCFADFVPKDGTIFYAL 830

Query: 840  AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            + IK VG     +++ E   +  F S+EDF  RV SK +N+  LE L+ AGA DC   +R
Sbjct: 831  SGIKAVGFEAISNVIKEREENGKFLSMEDFLKRVSSKDINKLQLEGLIKAGAFDCIDKNR 890

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSVENSSVRFENEQR 957
             +L +++  I K ++  ++N      N+F +     F    T+     E   ++ E E  
Sbjct: 891  SKLYENVPEIIKQSKSYDENLQVDQINLFESQTNDNFKINFTVHPAWDEPEKIKREFES- 949

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             +GF+ S HPL  YK IL    +  ++        N   L+  V++ Q+KKT KG     
Sbjct: 950  -IGFFVSEHPLKNYKHILDNYSVVQFQSFSDNKNINECMLSGTVMAIQEKKTAKGMPFAI 1008

Query: 1018 VTFSEPAKEYEANFF 1032
            V FS+ ++ +E   F
Sbjct: 1009 VKFSDLSRMFEFFIF 1023


>gi|332184948|ref|ZP_08386697.1| DNA polymerase III, alpha subunit [Sphingomonas sp. S17]
 gi|332014672|gb|EGI56728.1| DNA polymerase III, alpha subunit [Sphingomonas sp. S17]
          Length = 1157

 Score =  845 bits (2184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/1040 (45%), Positives = 637/1040 (61%), Gaps = 38/1040 (3%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L++ SS+++L+GA+    I  +  A+  PA  +TD N L++A+ FS  A  AG+QPIIG 
Sbjct: 3    LRIFSSFTMLDGAIDPKAIAAQAKANAFPAAGLTDRNGLYAAMAFSDAAKKAGVQPIIGT 62

Query: 74   QLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             L +   DM D++          P V  I L      GY  L  LVS  +L    + +  
Sbjct: 63   MLGVARPDMPDSVT---------PVVDWIALYAQDMTGYDNLCALVSAAHLERPIELAAH 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRH 189
            +    L +  T GLI LT G  G I R F       A+      + +FGDRLY+ L +R 
Sbjct: 114  VGFDTLGKFST-GLIALTAGGEGGIARLFAEGQPDRAKAYCDRLQAMFGDRLYIELARRD 172

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +   E  ++ LAY  +LPLVATN   F      +AHD ++ +A+ST V   DRP+ +
Sbjct: 173  DPTEIAAEQDLIDLAYDRDLPLVATNPCCFADSGFRDAHDAMLCIANSTYVEMDDRPKSS 232

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P+ +LK    M  +F+DLPEA++NT+ +A+RC+ +     PILP          ++ E  
Sbjct: 233  PEAWLKPAEVMKQLFADLPEAIDNTLVVAQRCAVMAPWRKPILPSLAGD-----REGEAA 287

Query: 310  ELRNKAVAGLEVRL-----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             LR  A AGLE RL      +G    G+  + Y +RL FE+++I +M F GYFLIVADFI
Sbjct: 288  MLRRDATAGLEARLDRIAELEGEGEPGWR-EAYHERLTFEVDIIIQMGFPGYFLIVADFI 346

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK ++IPVGPGRGSGAGSV A+ALTITD+DPL+  LLFERFLNP+R+SMPDFDIDFC+
Sbjct: 347  KWAKDHDIPVGPGRGSGAGSVVAWALTITDLDPLKLGLLFERFLNPERVSMPDFDIDFCE 406

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR EVIRYVQ KYG ++VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P 
Sbjct: 407  TRRGEVIRYVQEKYGRDQVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPT 466

Query: 485  HPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             P  L+ A+       +    D  V RLL+++ KLEGL RH+STHAAG+VIGDRPL+QLV
Sbjct: 467  DPWDLKRALNGVPELAKEYANDNQVRRLLDLATKLEGLPRHSSTHAAGVVIGDRPLAQLV 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+YRD RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++  L +RGV VDL  + +
Sbjct: 527  PLYRDPRSDMPVTQFDMKFVEGAGLVKFDFLGLKTLSVLQKAVQLLRKRGVDVDLGALAW 586

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  TY LL    T+G+FQLES GMR+ L  ++P    DIIALVSLYRPGP+DNI  +  
Sbjct: 587  DDEATYALLQKGDTVGVFQLESEGMRRTLSAVRPTNFGDIIALVSLYRPGPMDNIPSFGR 646

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK G E+I+  HPL++ +L ET G+ +YQEQVMQ AQ+L+GYSL  AD+LRRAMGKK+K 
Sbjct: 647  RKQGTEEIIYPHPLLEQILSETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKVKA 706

Query: 724  EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EMD Q+  F+ G  + NGI    A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K H
Sbjct: 707  EMDAQRAIFVKGCQEVNGIPAQKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAH 766

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYS 838
            +P EF AASM  +M   +K+  F  DAR+  + ++PP +N    +F V        + Y+
Sbjct: 767  HPHEFYAASMCYDMALTDKLAIFVDDARRMGVTMLPPCINASQAEFDVEPYEDGLAVRYA 826

Query: 839  LAAIKGVG-TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L A+K VG     + ++E  A   F SL+    RVD + +N+R LE+L  AGA D    +
Sbjct: 827  LGALKSVGEGAMEKLVVEREAGGAFASLDALAKRVDPRLMNKRQLETLASAGAFDGIEAN 886

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  +    + +   A    + RT+    +F  E     D I L        S R E E+ 
Sbjct: 887  RAGVHAVAETVLAIAARTHEGRTSGQGGLFG-ETEVAGDAIKLPSGVRWTLSQRMEQEKE 945

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGY---EESVATIRGNNI--RLAAMVVSKQQKKTRKG 1012
              GFYFS HP+D +  I +  G + Y    E +    G  I   +AA+V   + + + +G
Sbjct: 946  AFGFYFSAHPVDRHAHIAKMHGARTYTSLTELIIPDDGARIGATMAALVEDARWRTSARG 1005

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
             R      S+   ++ A  F
Sbjct: 1006 KRYMMAQLSDATGQFLATCF 1025


>gi|87199787|ref|YP_497044.1| DNA polymerase III, alpha subunit [Novosphingobium aromaticivorans
            DSM 12444]
 gi|87135468|gb|ABD26210.1| DNA polymerase III, alpha subunit [Novosphingobium aromaticivorans
            DSM 12444]
          Length = 1215

 Score =  842 bits (2175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/1080 (42%), Positives = 662/1080 (61%), Gaps = 65/1080 (6%)

Query: 4    YLEKSP--SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            YL   P  +FV L++ SSY++L+GA+    I    A    PA AITD N L+ ++ +++ 
Sbjct: 16   YLVHMPHAAFVPLRIFSSYTMLDGAIDPKAIAKTAAERGFPAAAITDRNGLYGSVAYAKA 75

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
                G+QP+IG  L +   +            PT+  + L    A GY  L  LVSR +L
Sbjct: 76   CKDMGVQPVIGTMLAVARPERDGAATGFGPAAPTIDWLALYAQDARGYDNLCHLVSRAHL 135

Query: 122  LDQGKQSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                + +  + L+ L  +G T+GLI LT  S G + +         AE  +    +LF +
Sbjct: 136  DRPLEFAPHVVLADL--VGHTDGLICLTAASEGALAQLLAGGQQSAAEAYVDRLLELFPE 193

Query: 181  RLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            RLY+ + +R+   +   E+ ++ LAY  +LPLVATN + F     Y+AHD ++ +A ST 
Sbjct: 194  RLYIEIARRNDAVEEASETALIDLAYARDLPLVATNPACFAERTFYDAHDAMLCIASSTH 253

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            V   DRPR + + ++K  + M  +F DLPEAL NT+ +A+RC+ +     PILP      
Sbjct: 254  VDSADRPRSSKEWWIKPAAVMEELFKDLPEALANTLVVAQRCAVMPPKRKPILP------ 307

Query: 300  CDDIQKEEENELR---NKAVAGLEVRLAQGAIAKGYHAQ--------------------- 335
               +  ++E E R     +  GL +RL +    +  HA+                     
Sbjct: 308  --SLAGDQEGEARMCAEDSRKGLVLRL-EPYYPESTHAELARVLCLGPDAEPVAADHPQL 364

Query: 336  ----------DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                      DYR+RL+FE+ +I RM F GYFLIVADFI+WAK++ IPVGPGRGSGAGS+
Sbjct: 365  VEAGVWEEVLDYRKRLEFEIAIINRMGFGGYFLIVADFIKWAKEHGIPVGPGRGSGAGSL 424

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             A+ALTITD+DP++  LLFERFLNP+R+SMPDFDIDFC+ RR EVIRYVQ KYG + VAQ
Sbjct: 425  VAWALTITDLDPIKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQRKYGEDHVAQ 484

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLA 504
            IITFG L+A+A LRD GR LQM Y Q DRLCK++PN P  P  L +A+   +  +     
Sbjct: 485  IITFGKLKARAVLRDTGRILQMSYGQTDRLCKMVPNHPTDPWPLPRALNGVAELKREYDR 544

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            DP V RL++++ +LEGL R++STHAAG+VIGDRPL+QLVP+YRD RSD+PVTQF+MK +E
Sbjct: 545  DPEVKRLIDLAMQLEGLPRNSSTHAAGVVIGDRPLAQLVPLYRDPRSDMPVTQFDMKHVE 604

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             AGL+KFDFLGLKTL++L+K++D + +R +++DLS +P+DD +TY LL +  T+G+FQLE
Sbjct: 605  DAGLVKFDFLGLKTLSVLRKAVDLMKKRSIEIDLSALPWDDEQTYKLLQSGDTVGVFQLE 664

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S GMR+ L  ++P    DIIALVSLYRPGP+DNI ++  RKNG E I   H  +  +L E
Sbjct: 665  SEGMRRTLAAVKPTNFGDIIALVSLYRPGPMDNIPLFGRRKNGLEAIEYPHDKLAGILSE 724

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISK 743
            T G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKK++ EMD Q++RF+ G  + +GI  
Sbjct: 725  TYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKVQAEMDAQRQRFVDGCKEVSGIPA 784

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
              A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+KTHYP EF AA+M  +M   EK+ 
Sbjct: 785  AKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKTHYPHEFYAAAMCFDMHQSEKLS 844

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEA-SA 858
             F  D R+  + +  P +N    +F V        + Y+LA ++ VG      I+E   A
Sbjct: 845  VFVDDMRRNGVALAGPDINHSEAEFTVERTHDGYAVRYALAGLRNVGEKAMEQIVEEREA 904

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
            + PF SL+D   R+ +  +NRR LE+L   GALDC   +R Q++ + + +   A+   ++
Sbjct: 905  NGPFASLDDLFRRIPAGSMNRRQLEALAAGGALDCLEPNRAQIIANAELLMAVAEEASRS 964

Query: 919  RTNKHENIF-AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
            RT+    +F   +  T + +++  K       +  E E    GFYF+ HP++ Y+ +   
Sbjct: 965  RTSGQGGLFGGDDHATPATRLSDTKPWSRADQMAAEREN--FGFYFAAHPVEEYRAVASA 1022

Query: 978  MGIKGYEESVATIRG-----NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             G + Y  S+ T  G     +   +AA+V + Q++KT+KG       FS+ +  + A+ F
Sbjct: 1023 NGARSY-GSLMTSSGEPGGRSGAVMAALVENVQKRKTKKGKDFVMADFSDSSGLFSASCF 1081


>gi|296283776|ref|ZP_06861774.1| DNA polymerase III, alpha subunit [Citromicrobium bathyomarinum
            JL354]
          Length = 1155

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/1037 (44%), Positives = 649/1037 (62%), Gaps = 36/1037 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKACAAGIQP 69
            FV L+V S++S+LEGA+    I  K+A ++  PAIA+ D N L+ ++ F+Q     G+QP
Sbjct: 6    FVPLRVLSAFSMLEGAIEPKAIA-KLATERGFPAIAMCDRNGLYGSVPFAQACIENGVQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G  L +   D+ ++ +           + L V    G+  L  LVS  +L    +Q  
Sbjct: 65   IVGALLGVARPDSDQIDH-----------LPLYVQDDAGWLNLCRLVSAAHLERPLEQVP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + L+ L+   T+GLI LTG S G + R         A + L   + LF  RLY+ L R 
Sbjct: 114  HVPLAALEGY-TDGLIALTGASEGAVTRLLAQGQGVHAARYLDRLEALFPQRLYIELAR- 171

Query: 190  RG--YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RG   +   E  ++ LAY  +LPLVATN + F     Y+AHD ++ +A+S  + ++DRPR
Sbjct: 172  RGEPTEVAAEEALLDLAYARDLPLVATNPANFAEPHFYKAHDAMLCIANSRKLWEEDRPR 231

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 Y+K+   M  +F+DLPEAL NT+ IA+RC+F     APILP        D++ E 
Sbjct: 232  SAKAAYVKSAPMMQELFADLPEALANTLTIAQRCAFAPPQRAPILPSL----AGDLEGEA 287

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L   A  GL+ RLA          Q Y +RLD+E+ +I  M F GYFLIVADFI+WA
Sbjct: 288  KM-LAEDARRGLDARLAIYEDLSDEERQTYYERLDYEVGIIHNMGFPGYFLIVADFIKWA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K +NIPVGPGRGSGAGS+ A++LTITD+DP+R  LLFERFLNP+R+SMPDFDIDFC+ RR
Sbjct: 347  KDHNIPVGPGRGSGAGSLVAWSLTITDLDPIRLGLLFERFLNPERVSMPDFDIDFCETRR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVIRYVQ KYG ++VAQIITFG ++A+A LRD GR L M Y QVDRLCK++PN P  P 
Sbjct: 407  GEVIRYVQEKYGADKVAQIITFGKMKARAVLRDCGRILDMSYGQVDRLCKMVPNHPTDPW 466

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            SL +A+   + F+     D  V  L++++ +LEGL R++STHAAG+VIGDRPL++LVP+Y
Sbjct: 467  SLPRALNGAAEFKGEYDNDNEVRTLVDLAMQLEGLPRNSSTHAAGVVIGDRPLAELVPLY 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            RD RSD+PVTQF+MK +E AGL+KFDFLGLKTL++LQK++D L +RG++ DL  + +DD 
Sbjct: 527  RDPRSDMPVTQFDMKVVEGAGLVKFDFLGLKTLSVLQKAVDLLKRRGIECDLGTVSWDDK 586

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y L+    T+G+FQLES GMR+ L  ++P   EDIIALVSLYRPGP+DNI ++  RK 
Sbjct: 587  AVYDLMQRGDTVGVFQLESEGMRRTLTAVKPTKFEDIIALVSLYRPGPMDNIPLFGKRKA 646

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G E I   H  ++ +LKET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKK + EMD
Sbjct: 647  GVEPIEYPHAKLEGILKETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKNQAEMD 706

Query: 727  KQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            KQ++RFI G  K + I    A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K HYP 
Sbjct: 707  KQRQRFIDGCKKVSDIEANEASALFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPE 766

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----RIYYSLAA 841
            EF AA+M  +MD  EK+  F  DAR+  I++  P +N    +F V        + Y LA 
Sbjct: 767  EFYAAAMCFDMDQSEKLAVFVDDARRNGIEVAAPDLNRSEAEFSVERTDDGYAVRYGLAG 826

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            ++ VG      I+ E  A   F+SL+DF SR+    +N R LE+L+ AGA D    +R Q
Sbjct: 827  LRNVGEKAMDAIVAEREAHGWFESLDDFFSRLPKGAMNSRQLEALIAAGAFDHLEPNRGQ 886

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L  ++D +   A    + R++  E +F +E  + +  + ++     + + R   E+   G
Sbjct: 887  LTANVDLLLAVADAAIRERSSGQEGLFGNED-SANQGLRMKDAEDWSRAERMAKERETFG 945

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEE-----SVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            FYFS HP++ ++ +    G + Y            RG  + +AAMV   ++ +TR+G   
Sbjct: 946  FYFSAHPIEQFRDVASANGARSYSSLMTGGPAGEARGRAV-IAAMVEGAKRGQTRRGKDF 1004

Query: 1016 GWVTFSEPAKEYEANFF 1032
                FS+   ++ A  F
Sbjct: 1005 IRADFSDSTGQFSAACF 1021


>gi|85708817|ref|ZP_01039883.1| DNA polymerase III alpha subunit [Erythrobacter sp. NAP1]
 gi|85690351|gb|EAQ30354.1| DNA polymerase III alpha subunit [Erythrobacter sp. NAP1]
          Length = 1165

 Score =  827 bits (2136), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/1042 (44%), Positives = 647/1042 (62%), Gaps = 37/1042 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKACAAGIQP 69
            FV L+V SSYS+LEGA+    I  K+A ++  PAI+I D N L+ A+ F+    + G+QP
Sbjct: 6    FVPLRVLSSYSMLEGAIDPKAIA-KLAKERGFPAISICDRNGLYGAVMFANACKSEGVQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L +      +  ++GK     V  + LL     GY  L  LVS+ +L    +   
Sbjct: 65   IIGTLLGV-----AREGSEGKL----VDYLPLLAQDEAGYDNLCHLVSKAHLDRPLELEP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + +  L E  T+GLI LTG   G + R         A   +    KLF +RLY+ L RH
Sbjct: 116  HVVMDDL-EGHTDGLIALTGAGEGALTRLLAEGQVDTATTFVERLDKLFVNRLYIELARH 174

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                  R E  ++++AY   LPLVATN + F     ++AHD ++ +A+ST +  +DRPR 
Sbjct: 175  GDPVCERAEDALIEMAYNRALPLVATNPANFAEPHMHKAHDAMLCIANSTYIENEDRPRT 234

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                ++K+ + M  +F+DLPEA  NT+ IA+RC++      PILP        D++ E +
Sbjct: 235  NHAAFVKSSNMMEELFADLPEATANTLVIAQRCAYAPPYRDPILPSL----AGDLEGEAK 290

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L  ++ AGLE RL+          + Y  RLD+E+++I  M F GYFLIVADFIQWAK
Sbjct: 291  M-LAEQSKAGLEERLSSYEDLSEEDRKVYFDRLDYEIDIIVGMGFPGYFLIVADFIQWAK 349

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               IPVGPGRGSGAGS+ A+ALTITD+DP++  LLFERFLNP+R+SMPDFDIDFC+ RR 
Sbjct: 350  DQGIPVGPGRGSGAGSIVAWALTITDLDPIQLGLLFERFLNPERVSMPDFDIDFCETRRG 409

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVIRYVQ KYGH+ VAQIITFG ++A+A LRD GR LQM Y QVDRLCK++PN P  P +
Sbjct: 410  EVIRYVQKKYGHDHVAQIITFGKMKARAVLRDCGRILQMSYGQVDRLCKMVPNHPTDPWT 469

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L +A+   + F++    D  V RL++++ +LEGL R++STHAAG+VIGDRPL+QLVP+YR
Sbjct: 470  LPRALNGAADFKKEYDNDNEVKRLVDLALQLEGLPRNSSTHAAGVVIGDRPLAQLVPLYR 529

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D RSD+PVTQ++MK +E +GL+KFDFLGLKTL++L+K++D LA RG+++DL  +P DD  
Sbjct: 530  DPRSDMPVTQYDMKNVESSGLVKFDFLGLKTLSVLRKAVDLLAMRGIEIDLGALPLDDTA 589

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             Y L+    T+G+FQLES GMR+ L+ ++P    DIIALVSLYRPGP+DNI ++  RK G
Sbjct: 590  VYDLMQMGNTVGVFQLESEGMRRTLKAVKPSNFGDIIALVSLYRPGPMDNIPLFGQRKAG 649

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +  I   HP ++ +L ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKK++ EMD 
Sbjct: 650  EVAIEYPHPKLEGILAETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKVQAEMDI 709

Query: 728  QKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            Q+ RF+ G    +GI    A  +F+L+ KFA YGFNKSHAAAYA+++YQTAWMK HYP E
Sbjct: 710  QRGRFVEGCKDVSGIEAKQANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWMKAHYPEE 769

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQF--------NIQIMPPSVNTPCVDFKVGDN----R 834
            F AASM  ++   EK+  F  DAR++         ++++PP VN     F V        
Sbjct: 770  FYAASMCFDLHQSEKLNIFVDDARRYPAERANGSGVEVLPPDVNHSEARFTVEQTDDGYA 829

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            + Y+LA I+ VG      I+ E  +  PF+SL+D   R+    +NRR LE L+ AGALD 
Sbjct: 830  VRYALAGIRNVGEKAMEAIVAERRSKGPFESLKDLFERMPHGAMNRRQLEGLICAGALDG 889

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R +L  + D +   A    + R++    +F  +     D + L+     +   +  
Sbjct: 890  LYPNRGELFANADLLLATADAAARERSSGQGGLFGGDNAPQED-LRLQPAESWSRPDQMA 948

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYE---ESVATIRGNNIRLAAMVVSKQQKKTR 1010
             E+   GFYFS HP+  Y+ +    G + Y+   +  A        +AAMV S  + +T+
Sbjct: 949  KERENFGFYFSAHPVQQYREVASAQGARTYQSLMDGGAPAGRQTAVIAAMVESAGKGRTK 1008

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G+      FS+ + ++ A  F
Sbjct: 1009 RGAEFVRGQFSDSSGQFSAACF 1030


>gi|149184684|ref|ZP_01863002.1| DNA polymerase III alpha subunit [Erythrobacter sp. SD-21]
 gi|148832004|gb|EDL50437.1| DNA polymerase III alpha subunit [Erythrobacter sp. SD-21]
          Length = 1157

 Score =  821 bits (2121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/1039 (44%), Positives = 637/1039 (61%), Gaps = 39/1039 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKACAAGIQP 69
            FV L+V S+YS+LEGA+     + K+A ++  PAIA+ D N L+ A+ F+    A GIQP
Sbjct: 6    FVPLRVLSAYSMLEGAID-PKAMAKLAKERGFPAIAMADRNGLYGAVMFANACKAEGIQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +   +      +G+T    V  + L      GY  L  LVS+ +L    +   
Sbjct: 65   ITGTLLGVARDE------EGRT----VDYLPLYAQDEAGYDNLCHLVSKAHLERPLEFEP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I +  L E  T+GLI LTG S G + R      +  A   L   + LF  RLYV L R 
Sbjct: 115  HIRMEDL-EGRTDGLIALTGASEGGVTRLLAEGQTSHATAMLDKLEALFPGRLYVELAR- 172

Query: 190  RG--YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RG   +   E+ ++ LAY  +LPLVATN + F     Y+AHD ++ +A+ST +  ++R +
Sbjct: 173  RGNPVEEAAEAALIDLAYERDLPLVATNPANFAEPHMYKAHDAMLCIANSTHIDNEERAK 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              P+ Y+K    M   F DLPEA  NT+ +A+RC++      PILP        D++ E 
Sbjct: 233  SNPEAYVKTAHMMEEAFDDLPEATTNTLVVAQRCAYAPPYRDPILPSL----AGDLEGEA 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L   A  GLE RL           + Y  RLD+E+ +I +M F GYFLIVADFI+WA
Sbjct: 289  RM-LEADARKGLEKRLEPYGEMTEEARKVYFDRLDYEVGIINQMGFPGYFLIVADFIKWA 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K ++IPVGPGRGSGAGS+ A+ALTITD+DP++  LLFERFLNP+R+SMPDFDIDFC+ RR
Sbjct: 348  KDHDIPVGPGRGSGAGSLVAWALTITDLDPIQLGLLFERFLNPERVSMPDFDIDFCETRR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVIRYVQ KYGH+ VAQIITFG L+A+A LRD GR LQM Y  VDR+CK++PN P  P 
Sbjct: 408  GEVIRYVQAKYGHDHVAQIITFGKLKARAVLRDTGRILQMSYGHVDRICKMVPNHPTDPW 467

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L +A+   + F+     D  V RL++++ KLEG  R++STHAAG+VIGDRPL+QLVP+Y
Sbjct: 468  TLPRALNGAADFKAEYDNDNEVKRLIDLAMKLEGFPRNSSTHAAGVVIGDRPLAQLVPLY 527

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            RD RSD+PVTQ++MK +E +GL+KFDFLGLKTL++L+K+ D L +R + +DLS +  DD 
Sbjct: 528  RDPRSDMPVTQYDMKNVESSGLVKFDFLGLKTLSVLKKATDLLKKRDITIDLSQLELDDP 587

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y L+    T+G+FQLES GMR+ L  ++P    DIIALVSLYRPGP+DNI ++  RK 
Sbjct: 588  AVYELMKAGNTVGVFQLESEGMRRTLTAVKPTNFGDIIALVSLYRPGPMDNIPLFGKRKA 647

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+  I   H  ++ +L ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKK++ EMD
Sbjct: 648  GEVPIEYPHEKLEGILAETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKVQAEMD 707

Query: 727  KQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             Q+ERF++G    +GI K  A  +F+L+ KFA YGFNKSHAAAYA+++YQTAWMK HYP 
Sbjct: 708  IQRERFVAGCKDVSGIEKAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWMKAHYPE 767

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----RIYYSLAA 841
            EF AASM  +M   EK+  F  DAR+  I + PP +N    +F V        + Y+LA 
Sbjct: 768  EFFAASMCFDMHQSEKLTIFVDDARRQGIAVEPPCLNKSEAEFTVEQTDTGYAVRYALAG 827

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            I+ VG     +I+ E      FDSL+D   R+    +N R LE+L  AGALD    +R +
Sbjct: 828  IRNVGEKAMENIVAEREVSGQFDSLQDLFERIPKGSMNSRQLEALACAGALDSLEPNRSK 887

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN--SSVRFENEQRV 958
            + ++ D +   A   ++ RT+   ++F    G  +   TL    VE+   + R   E+  
Sbjct: 888  VFENADMLLAVADAADRERTSGQASMFG---GDDAPGETLRLREVEDWPRAERMAREREN 944

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEE-----SVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             GFYFS HP+  +K I    G + Y       + A  R N + +AAMV    +  TR+G 
Sbjct: 945  FGFYFSNHPVAAWKDIASANGARTYASLMSGGAPAGGRSNAV-MAAMVEKVNKGTTRRGK 1003

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
                  FS+   ++ A  F
Sbjct: 1004 PFIRADFSDATGQFSAACF 1022


>gi|326387647|ref|ZP_08209253.1| DNA polymerase III, alpha subunit [Novosphingobium nitrogenifigens
            DSM 19370]
 gi|326207693|gb|EGD58504.1| DNA polymerase III, alpha subunit [Novosphingobium nitrogenifigens
            DSM 19370]
          Length = 1196

 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/1068 (42%), Positives = 639/1068 (59%), Gaps = 57/1068 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L+V SSY++L+GA+    I    A    PAIAITD N L+ ++ F++     G+QP+
Sbjct: 6    FVSLRVFSSYTMLDGAVDPKVIAKTAAERGFPAIAITDRNGLYGSVAFAKACKDVGVQPV 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L +   +    T       PT+  + L    + GY  +  LVSR +L    + +  
Sbjct: 66   IGTMLAVARPERGGATTTFGPQAPTIDWLALYAQDSTGYDNICHLVSRAHLDRPLEFAPH 125

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + +  L    T+GL+ L+ G  G I R         AE        LF DR Y+ L R R
Sbjct: 126  VRVEDLAG-HTDGLLCLSAGGEGAITRLLAEGQQDAAEAYADEIAGLFPDRFYIELAR-R 183

Query: 191  G--YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            G   +   E  ++ LAY  + PLVATN + F     Y AHD ++ +A ST V   DRPR 
Sbjct: 184  GDPVEERAEDALIDLAYARDWPLVATNPACFAERAFYPAHDAMLCIASSTHVDSADRPRS 243

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            + + ++K    M  +F D+PEAL NT+ +A+RC+ +     PILP         +  ++E
Sbjct: 244  SVEWWIKPAPVMEELFKDIPEALANTLVVAQRCAAMPPKRKPILP--------SLAGDKE 295

Query: 309  NELRNKAV---AGLEVRL----------------AQGAIAKGYHAQ-------------- 335
             E R  A     GL  RL                  G   +   A+              
Sbjct: 296  GEARMCAADSRTGLVARLMPYYPADTHEELSALLTMGPEGEPVEAEFPALSAAGIFGEVC 355

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            +YR RL+FE+ +I RM F GYFLIVADFI+WAK+++IPVGPGRGSGAGS+ A+ALTITD+
Sbjct: 356  NYRHRLEFEIGIINRMGFGGYFLIVADFIKWAKEHSIPVGPGRGSGAGSLVAWALTITDL 415

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DP+R  LLFERFLNP+R+SMPDFDIDFC+ RR EVIRYVQ KYG + VAQIITFG L+A+
Sbjct: 416  DPIRLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQRKYGEDHVAQIITFGKLKAR 475

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEI 514
            A LRD GR LQM Y QVDRLCK++PN P  P  L +A+   +  +     DP V RL+++
Sbjct: 476  AVLRDTGRILQMSYGQVDRLCKMVPNHPTDPWPLPRALNGVAELKREYDRDPEVRRLIDL 535

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            + +LEGL R++STHAAG+VIGDRPL+QLVP+YRD RSD+PVTQF+MK +E AGL+KFDFL
Sbjct: 536  AMQLEGLPRNSSTHAAGVVIGDRPLAQLVPLYRDPRSDMPVTQFDMKHVEDAGLVKFDFL 595

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            GLKTL++L+K++D L +RG+++DLS + +DD + Y LL +  T+G+FQLES GMR+ L  
Sbjct: 596  GLKTLSVLRKAVDLLGKRGIQIDLSTLGWDDAQVYRLLQSGDTVGVFQLESEGMRRTLAA 655

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
            ++P    DIIALVSLYRPGP+DNI ++  RKNG E+I   H  +  +L ET G+ +YQEQ
Sbjct: 656  VKPTNFGDIIALVSLYRPGPMDNIPLFGRRKNGLEEIEYPHDKLAGILSETYGIFVYQEQ 715

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELL 753
            VMQ AQ+L+GYSL +AD+LRRAMGKKI+ EMD+Q+ RF++G  + + I    A  +F+L+
Sbjct: 716  VMQAAQILAGYSLGDADLLRRAMGKKIQAEMDQQRARFVAGCKEVSQIDAGKANELFDLI 775

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA+++YQTAW+KTHYP EF AA+M  +M   EK+  F  D R+  
Sbjct: 776  DKFAGYGFNKSHAAAYALLAYQTAWLKTHYPHEFYAAAMCFDMHQSEKLNIFVDDMRRNG 835

Query: 814  IQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDF 868
              +  P +N    +F V        + Y+LA ++ VG      I+ E  A+ PF +L++ 
Sbjct: 836  FALAGPDINRSVAEFTVERTEESYAVRYALAGLRNVGEKAMEAIVAEREANGPFQTLDEL 895

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              R+ +  +NRR LE+L   GALDC   +R +L+ + + +   A    + RT+    +F 
Sbjct: 896  FRRLPAGAMNRRQLEALAAGGALDCLEPNRAKLIANAELLMAVADEASRARTSGQGGLFG 955

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
             +         L +    + + +   E+   GFYF+ HP++ Y+ I    G + Y   + 
Sbjct: 956  GDD-HVEQATRLVETKPWSRAEQMAAERENFGFYFAAHPVEEYRAISSANGARTYASLMM 1014

Query: 989  TIRGNNIR----LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   R    +AA+V   Q++KT++G       FS+ +  + A  F
Sbjct: 1015 GGGTATGRTGAVMAALVEGVQKRKTKRGKDFVMADFSDKSGLFSACCF 1062


>gi|85374223|ref|YP_458285.1| DNA polymerase III alpha subunit [Erythrobacter litoralis HTCC2594]
 gi|84787306|gb|ABC63488.1| DNA polymerase III alpha subunit [Erythrobacter litoralis HTCC2594]
          Length = 1163

 Score =  818 bits (2113), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/1046 (44%), Positives = 644/1046 (61%), Gaps = 49/1046 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKACAAGIQP 69
            FV L+V SSYS+LEGA+     L K+A ++  PAIAI D N L+ A+ F+      GIQP
Sbjct: 6    FVPLRVLSSYSMLEGAID-PKALAKLAKERGFPAIAICDRNGLYGAVAFAGACRDEGIQP 64

Query: 70   IIGCQLDI-----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD- 123
            IIG  + +     D  D+L +  Q +  +    ++  LVS A   +R +ELV  + L D 
Sbjct: 65   IIGALVGVARPGSDAIDHLPLYAQDEAGYL---NLCHLVSKAH-LERPVELVPHVSLDDF 120

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             G+              TEGLI LTG S G + +         AE      + LF +RLY
Sbjct: 121  DGR--------------TEGLIALTGASEGGVTQLLAEGQKDHAEAYCDRLQALFPERLY 166

Query: 184  VNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            V L R     ++  E  +V LAY  +LPLVATN + F     ++AHD ++ +A S  + +
Sbjct: 167  VELSRRGNAVEQAAEEALVDLAYARDLPLVATNPANFAEPGFHKAHDAMLCIAGSYKIHE 226

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +DRPR     ++K+   M  IF DLPEA  NT+ IA+RC++      PILP        D
Sbjct: 227  EDRPRTDQQAWVKSDRMMGEIFEDLPEATANTLVIAQRCAYAPPYRDPILPSL----AGD 282

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            ++ EE   LR  +  GLE RL           ++Y +RLD+E+ +I RM F GYFLIVAD
Sbjct: 283  LEGEERM-LRELSTKGLEKRLEPYEDLSDEDREEYFERLDYEIGIINRMGFPGYFLIVAD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK + IPVGPGRGSGAGS+ A+ALTITD+DP+R  LLFERFLNP+R+SMPDFDIDF
Sbjct: 342  FIQWAKDHGIPVGPGRGSGAGSLVAWALTITDLDPIRLGLLFERFLNPERVSMPDFDIDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C+ RR EVIRYVQ +YGH++VAQIITFG L+A+A LRDVGR +   Y++ DRLCK++PN 
Sbjct: 402  CETRRGEVIRYVQERYGHDKVAQIITFGKLKARAVLRDVGRIVDYGYNRTDRLCKMVPNH 461

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P  P +L +A+   + F+     D     L++++ +LEGL R++STHAAG+VIGDRPLSQ
Sbjct: 462  PTDPWTLPRALNGSAEFKAEYSNDNDTKALIDLAMQLEGLPRNSSTHAAGVVIGDRPLSQ 521

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVP+YRD RSD+PVTQF+MK +E +GL+KFDFLGLKTL++LQK++D L +RG+ VDL  +
Sbjct: 522  LVPLYRDPRSDMPVTQFDMKHVESSGLVKFDFLGLKTLSVLQKAVDLLEKRGIDVDLGAL 581

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +DD   Y L+ +  T+G+FQLES GMR+ L  ++P   EDIIALVSLYRPGP+DNI ++
Sbjct: 582  AWDDPAVYELMKSGNTVGVFQLESEGMRRTLTAVKPTKFEDIIALVSLYRPGPMDNIPLF 641

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK G E I   HP ++ +L ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKK 
Sbjct: 642  GKRKAGLEPIEYPHPKLEEILAETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKN 701

Query: 722  KEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            + EMDKQ+  F+ G +K + I    A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K
Sbjct: 702  QAEMDKQRAIFVEGCAKVSDIDADKANELFDLINKFAGYGFNKSHAAAYALLAYQTAWLK 761

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQF-----NIQIMPPSVNTPCVDFKVGDN-- 833
             HYP EF AASM  +M   EK+  F  DAR++      I + PP +N    +F V     
Sbjct: 762  AHYPEEFYAASMCFDMHQSEKLAVFVDDARRYPLVEGGIVVAPPDINASEAEFTVERTDD 821

Query: 834  --RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               + Y+LA I+ VG      I+ E  A+  F+SL D   R+    +N R LE+L+ AGA
Sbjct: 822  GYAVRYALAGIRNVGEKAMDAIVREREANGVFESLGDLFDRLPQGAMNSRQLEALIAAGA 881

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            LD    +R +L  ++D +   A    + RT+  E +F  +     D + L+     +   
Sbjct: 882  LDGLEPNRGKLAANVDLLLATADAAIRERTSGQEALFGGDLAA-EDTLRLKDAEDWDRPT 940

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---ATIRG-NNIRLAAMVVSKQQ 1006
            R   E+   GFYFS HP++ ++ +    G + Y   +   A   G +   +AAMV     
Sbjct: 941  RMAKERENFGFYFSEHPVEHFRDVASANGARPYASLMTGGAPAGGRSKAMMAAMVEKVNI 1000

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              TR+G++     FS+ + ++ A  F
Sbjct: 1001 GTTRRGAQFVRADFSDSSGQFSAACF 1026


>gi|254456520|ref|ZP_05069949.1| DNA polymerase III, alpha subunit [Candidatus Pelagibacter sp.
            HTCC7211]
 gi|207083522|gb|EDZ60948.1| DNA polymerase III, alpha subunit [Candidatus Pelagibacter sp.
            HTCC7211]
          Length = 1138

 Score =  812 bits (2098), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1046 (40%), Positives = 663/1046 (63%), Gaps = 56/1046 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL++H+ YS+ EGA+ ++++ D   +++  ++A+ DT+NL  ALEF++K    G QP
Sbjct: 8    NFNHLKIHTQYSICEGAVKIDDLQDFAKSNKIKSLALCDTSNLCGALEFAEKISKVGTQP 67

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G Q++    D             TV  + L     +GY+R+I+L S  +L +      
Sbjct: 68   IVGTQINFKFGD-------------TVGLLPLFSLNEKGYKRIIKLSSLSFLENDKLSDP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL---FGDRLYVNL 186
             +  + L E   EG+ + +G + G       FN  +  E   L +KKL   F DR Y+ +
Sbjct: 115  HVDFNNLLE-NNEGVAIFSGTTFGLFGE--LFNKGKFTEIHDL-YKKLNSTFDDRFYIEI 170

Query: 187  QRHR-----GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            QRH      G++++  ++ ++L    ++P++ATN   +++++ +EAHD L+ + + T ++
Sbjct: 171  QRHNDQNELGFEKFNLNKSLEL----KIPIIATNEVFYINQDMHEAHDALICIGNKTYIN 226

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE-- 299
            +K+R  ++  HY K+ SEM  +F+DLPEALEN      RC+F      PILP    +E  
Sbjct: 227  EKNRKHLSNQHYFKSNSEMSELFADLPEALENNYNFPLRCNFRPLFSNPILPNISSEEGG 286

Query: 300  -CDDIQKEEENELRNKAVAGLEVR------LAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
              DD+       L+  +++GL+++      + +  +    +  DY+ RL+ EL++I  MK
Sbjct: 287  NADDL-------LKKDSLSGLKIKFNKIFGIKENELDNDKNYLDYKDRLNHELSIIIEMK 339

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            +S YFLIV+D+I+WAK N+IPVGPGRGSGAGS+ A+ L+ITD+DP++F+L+FERFLNPDR
Sbjct: 340  YSSYFLIVSDYIKWAKNNDIPVGPGRGSGAGSLVAWCLSITDVDPIKFNLIFERFLNPDR 399

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFDIDFC+++RD V  Y+  KY  + VA IITFG L+A+  +RDVGR L +PY  V
Sbjct: 400  ISMPDFDIDFCEEKRDLVFEYLTKKY-QDSVAHIITFGKLKARMVVRDVGRVLGLPYGFV 458

Query: 473  DRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            D + K+IP DP+ P +L Q I+ + R ++    D  V +L ++S KLEGL R+ +THAAG
Sbjct: 459  DSISKMIPFDPSRPQTLTQCISGEPRLQKLINEDQRVKKLTDLSLKLEGLNRNVATHAAG 518

Query: 532  IVIGDRPLSQLVPMYRDVRSDL--PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            +VI D+ L+++VP+Y+D  S+L  P TQF+M   E AGL+KFDFLGLKTLT++  +   +
Sbjct: 519  VVIADKKLTEVVPLYKDASSELLLPSTQFDMYSAENAGLVKFDFLGLKTLTVINNTQKLV 578

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
             +     D+  I ++D + + LL++  T+G+FQ+ESSGMR+AL  M+P+ IEDIIALV+L
Sbjct: 579  KKIDKNFDIEKISYEDQKVFELLSSGNTVGLFQVESSGMREALVQMKPNHIEDIIALVAL 638

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP+ NI  YN+ K+G++    +HPL++ +LK T GVIIYQEQVMQIAQ LSG++  +
Sbjct: 639  YRPGPMSNISTYNDCKHGRQTPDYLHPLLEDILKPTYGVIIYQEQVMQIAQKLSGFTAGQ 698

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK + E++KQK+ FI+GA +NGI+K +A  IF  +  FA+YGFNKSHAAAY
Sbjct: 699  ADLLRRAMGKKKRAELEKQKQGFIAGAVQNGIAKDVAAGIFLKIEPFAEYGFNKSHAAAY 758

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+ISYQTA++KT+YP EF+AASMT+++ N  K+ +F ++ ++ NI+++ P++N    DF+
Sbjct: 759  AIISYQTAFLKTYYPKEFIAASMTMDISNQNKLSEFYEELKRLNIKVVRPNINECYADFR 818

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
               ++ YY+L  IK VG     +++ E S +  FDS+ DF  RV+ K +N+  LE LV A
Sbjct: 819  TEGDKFYYALGGIKAVGYEAISNVIKERSENGKFDSINDFLKRVNPKDMNKLQLEGLVKA 878

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT--LEKFSVE 946
            GA D    +R  L  S+ N     + +  N++    ++F+ ++   +D IT  +E ++ E
Sbjct: 879  GAFDNLNNNRQSLFNSIPNFILKTKNIFDNKSANQIDLFSEDESLQND-ITHDIEDWNFE 937

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                R   E   +GF+ S HPL+ +  I     IK Y    +     +  +AA ++  Q+
Sbjct: 938  E---RLSKEFEAVGFFISNHPLNQFTEIFDDYKIKDYSNFNSNDEIKDANIAATLLKLQE 994

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +KT KG+    +  ++    +E   F
Sbjct: 995  RKTAKGNAYAVLKLTDLNSVFELFIF 1020


>gi|71083603|ref|YP_266322.1| DNA polymerase III subunit alpha [Candidatus Pelagibacter ubique
            HTCC1062]
 gi|71062716|gb|AAZ21719.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter ubique
            HTCC1062]
          Length = 1138

 Score =  811 bits (2094), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1044 (41%), Positives = 648/1044 (62%), Gaps = 52/1044 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL++H+ YS+ EGA+ ++N+ D     + P + I+DT+NL  ALEF++     G QP
Sbjct: 8    NFNHLKIHTQYSICEGAIKIDNLKDFCKEKKIPCLGISDTSNLCGALEFAENISKVGTQP 67

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG Q+    +D             T   + L+     GY+R+IEL SR YL +      
Sbjct: 68   IIGTQIYFKFED-------------TTGLLPLIALNENGYKRIIELSSRSYLENDALSDP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + +  L  I TEG+ +L+G   G   + F         K   +    F D  Y+ +QRH
Sbjct: 115  HLDVKELL-IDTEGVSLLSGTIQGLFGKLFEKGRLDEISKLYRSLSSKFNDNFYLEIQRH 173

Query: 190  R-----GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                   ++++   Q +++    ++P++ATN   +L+ + +EAHD L  +   T V++K+
Sbjct: 174  GDQNEIAFEKFNLEQSLKI----QIPIIATNEVYYLTPDMHEAHDALTCIGSKTYVNEKN 229

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            R + +  HY K+  EM  +FSDLPEALEN   +  +C+F  Q   P+LP    ++    D
Sbjct: 230  RIKYSNQHYFKSNEEMSKLFSDLPEALENNFNLPFKCNFRPQFSKPVLPNISSEKGGSAD 289

Query: 302  DIQKEEENELRNKAVAGLE------VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +I       L+  ++ GL+       ++ +  +        Y+ RLD EL +I  MK+  
Sbjct: 290  EI-------LKKDSLDGLKEKFQKVFKIEENNLKTDDKFLKYKDRLDHELKIIIEMKYPS 342

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV+D+I+WAK N+IPVGPGRGSGAGS+ A+ L+ITD+DP++F+L+FERFLNPDR+SM
Sbjct: 343  YFLIVSDYIKWAKNNDIPVGPGRGSGAGSLVAWCLSITDVDPIKFNLIFERFLNPDRVSM 402

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFC+++RD V +Y+  KY  + VA IITFG L+A+  +RDVGR L +PY  VD +
Sbjct: 403  PDFDIDFCEEKRDLVFKYLTTKY-KDSVAHIITFGKLKARMVIRDVGRVLGLPYGFVDSI 461

Query: 476  CKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             K+IP DP+ P SL + I  + R ++    DP V +L ++S KLEGL R+ +THAAG+VI
Sbjct: 462  SKMIPFDPSRPQSLTECINSEPRLQKLVNEDPRVKKLTDLSLKLEGLNRNVATHAAGVVI 521

Query: 535  GDRPLSQLVPMYRDVRSDL--PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
             DR L+++VP+Y+D  +DL  P TQF+M   E AGLIKFDFLGLKTLT++ ++   + ++
Sbjct: 522  ADRKLTEVVPLYKDAAADLLLPSTQFDMYSAENAGLIKFDFLGLKTLTVINRTQKLINKK 581

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                 +  I FDD + + LL++  T+G+FQ+ES+GMR+AL  M+P+ IEDIIALV+LYRP
Sbjct: 582  VKDFKIEDIDFDDQKVFELLSSGNTVGLFQVESAGMREALLQMKPNHIEDIIALVALYRP 641

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP+ NI +YN+ K+G++    +HPL++ +LK T GVIIYQEQVMQIAQ LSG++  EAD+
Sbjct: 642  GPMSNIPIYNDCKHGRQTPDYLHPLLEDILKPTYGVIIYQEQVMQIAQKLSGFTAGEADI 701

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK + E++KQK+ FI+GA KNGISK +A +IF  +  FA+YGFNKSHAAAYA+I
Sbjct: 702  LRRAMGKKKRAELEKQKQGFIAGALKNGISKEVAASIFLKIEPFAEYGFNKSHAAAYAII 761

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQTA++KT+YP EF AASMT+++ N  K+ +F ++ ++ NI+++ P +N    DF+  D
Sbjct: 762  SYQTAFLKTYYPKEFFAASMTMDISNQNKLGEFHEELKRINIKVIRPDINKCFADFQFDD 821

Query: 833  NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            N  YY+L  IK VG     +++ E + +  F S+ DF +RV+ K +N+  LE LV AGA 
Sbjct: 822  NNFYYALGGIKSVGYEAISNVVKERNENGDFKSINDFLNRVNPKDINKLQLEGLVKAGAF 881

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSV 950
            D    +R  L  S+ N     + + +N+     ++F  +    ++ +  +E +  E+   
Sbjct: 882  DNIDNNRQALFNSIPNFILKTKNIYENKAANQIDLFGSDDEQDNEIVLNIEDWKFED--- 938

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKK 1008
            R   E   +GF+ S HPL+ +K I     I  Y +     TI+  NI  AA ++   ++K
Sbjct: 939  RLSREFEAIGFFISDHPLNQFKEIFDDYKIVDYAQFNLNDTIKEANI--AATLLKITERK 996

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T KG+  G + F++    +E   F
Sbjct: 997  TAKGNSYGVIKFTDLTSVFELFIF 1020


>gi|91761976|ref|ZP_01263941.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter ubique
            HTCC1002]
 gi|91717778|gb|EAS84428.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter ubique
            HTCC1002]
          Length = 1138

 Score =  810 bits (2093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1039 (41%), Positives = 650/1039 (62%), Gaps = 42/1039 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL++H+ YS+ EGA+ ++N+ D     + P + I+DT+NL  ALEF++     G QP
Sbjct: 8    NFNHLKIHTQYSICEGAIKIDNLKDFCKEKKIPCLGISDTSNLCGALEFAENISKVGTQP 67

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG Q+    +D             T   + L+     GY+R+IEL SR YL +      
Sbjct: 68   IIGTQIYFRFED-------------TTGLLPLIALNENGYKRIIELSSRSYLENDALSDP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + +  L  I TEG+ +L+G   G   + F         K   +    F D  Y+ +QRH
Sbjct: 115  HLDVKDLL-IDTEGVSLLSGTIQGLFGKLFEKGRLDEISKLYRSLSSKFNDNFYLEIQRH 173

Query: 190  R-----GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                   ++++   Q +++    ++P++ATN   +L+ + +EAHD L  +   T V++K+
Sbjct: 174  GDQNEIAFEKFNLEQSLKI----QIPIIATNEVYYLTPDMHEAHDALTCIGSKTYVNEKN 229

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            R + +  HY K+  EM  +FSDLPEALEN   +  +C+F  Q   P+LP    ++    D
Sbjct: 230  RIKYSNQHYFKSNEEMSKLFSDLPEALENNFNLPFKCNFRPQFSKPVLPNISSEKGGSAD 289

Query: 302  DIQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +I K++  + L+ K +   +V   +  +        Y+ RLD EL +I  MK+  YFLIV
Sbjct: 290  EILKKDSLDGLKEKFLKVFKVE--ENNLKTDDKFLKYKDRLDHELKIIIEMKYPSYFLIV 347

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +D+I+WAK N+IPVGPGRGSGAGS+ A+ L+ITD+DP++F+L+FERFLNPDR+SMPDFDI
Sbjct: 348  SDYIKWAKNNDIPVGPGRGSGAGSLVAWCLSITDVDPIKFNLIFERFLNPDRVSMPDFDI 407

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC+++RD V +Y+  KY  + VA IITFG L+A+  +RDVGR L +PY  VD + K+IP
Sbjct: 408  DFCEEKRDLVFKYLTTKY-KDSVAHIITFGKLKARMVIRDVGRVLGLPYGFVDSISKMIP 466

Query: 481  NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             DP+ P SL + I  + R ++    DP V +L ++S KLEGL R+ +THAAG+VI DR L
Sbjct: 467  FDPSRPQSLTECINSEPRLQKLVNEDPRVKKLTDLSLKLEGLNRNVATHAAGVVIADRKL 526

Query: 540  SQLVPMYRDVRSDL--PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            +++VP+Y+D  +DL  P TQF+M   E AGLIKFDFLGLKTLT++ ++   + ++     
Sbjct: 527  TEVVPLYKDAAADLLLPSTQFDMYSAENAGLIKFDFLGLKTLTVINRTQKLINKKVKDFK 586

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  I FDD + + LL++  T+G+FQ+ES+GMR+AL  M+P+ IEDIIALV+LYRPGP+ N
Sbjct: 587  IEDIDFDDQKVFELLSSGNTVGLFQVESAGMREALLQMKPNHIEDIIALVALYRPGPMSN 646

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I +YN+ K+G++    +HPL++ +LK T GVIIYQEQVMQIAQ LSG++  EAD+LRRAM
Sbjct: 647  IPIYNDCKHGRQTPDYLHPLLEDILKPTYGVIIYQEQVMQIAQKLSGFTAGEADILRRAM 706

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK + E++KQK+ FI+GA KNGISK +A +IF  +  FA+YGFNKSHAAAYA+ISYQTA
Sbjct: 707  GKKKRAELEKQKQGFIAGALKNGISKEVAASIFLKIEPFAEYGFNKSHAAAYAIISYQTA 766

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++KT+YP EF AASMT+++ N  K+ +F ++ ++ NI+++ P +N    DF+  DN  YY
Sbjct: 767  FLKTYYPKEFFAASMTMDISNQNKLGEFHEELKRINIKVIRPDINKCFADFQFDDNNFYY 826

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            +L  IK VG     +++ E + +  F S+ DF +RV+ K +N+  LE LV AGA D    
Sbjct: 827  ALGGIKSVGYEAISNVVKERNENGDFKSINDFLNRVNPKDINKLQLEGLVKAGAFDNIDN 886

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENE 955
            +R  L  S+ N     + + +N+     ++F  ++   ++ +  +E +  E+   R   E
Sbjct: 887  NRQALFNSIPNFILKTKNIYENKAANQIDLFGSDEEQDNEIVLNIEDWKFED---RLSRE 943

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGS 1013
               +GF+ S HPL+ +K I     I  Y +     TI+  NI  AA ++   ++KT KG+
Sbjct: 944  FEAIGFFISDHPLNQFKEIFDDYKIVDYAQFNLDDTIKEANI--AATLLKITERKTAKGN 1001

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
              G + F++    +E   F
Sbjct: 1002 SYGVIKFTDLTSVFELFIF 1020


>gi|225631083|ref|ZP_03787815.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591221|gb|EEH12371.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 797

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/785 (51%), Positives = 551/785 (70%), Gaps = 15/785 (1%)

Query: 197 ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKN 256
           E  ++  AY   +PLVATN+  F +  DYEA+D+L  ++  +   + +R ++T +HY K+
Sbjct: 2   EEALIDFAYQRNIPLVATNDVFFPNRSDYEAYDILTCISEGSYALENNRKKLTTEHYFKS 61

Query: 257 RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
            +EM  +FSD+PEA+ NT+ IA+RCS++ +   PILP+F  +E     K E  ELR +AV
Sbjct: 62  VAEMEELFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTENEELREQAV 117

Query: 317 AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           AGLE R+A          + Y  RL++EL+VI  M ++GYFLIV+DFI+W+K N IPVGP
Sbjct: 118 AGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSKANGIPVGP 174

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ A+ L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD VI YVQ 
Sbjct: 175 GRGSGAGSIVAWGLQITDLDPIKFGLIFERFLNPDRVSMPDFDIDFCQEKRDLVIDYVQK 234

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADD 495
           KYG+  VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+L QAI  D
Sbjct: 235 KYGY--VAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVTLSQAIEFD 292

Query: 496 SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
              ++ R +D  + +LL+IS KLEG+YRH STHAAGIVI D+ L   VP+Y D  S LP+
Sbjct: 293 QNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYYDPNSALPI 352

Query: 556 TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
           TQ++MK++EKAGLIKFDFLGL TLTL+      + + G K+D+S +P +D +TY +L++ 
Sbjct: 353 TQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDGKKIDISSVPLNDQKTYEILSSG 412

Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
            ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  RK+G EK   IH
Sbjct: 413 DSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHGLEKPDYIH 472

Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
           PL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEMDKQ+E FI G
Sbjct: 473 PLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEMDKQRELFIQG 532

Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
           A+KNG+    A  IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+EF  A M L 
Sbjct: 533 ATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLEFFTALMNLN 592

Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
           +D+ +K+  F   A+   + ++ P +N    +F + D RI Y +AA++ VG + A  I+ 
Sbjct: 593 IDDRDKLNLFYHAAKFSGVTVLSPDINKSQAEFSIEDERIRYGIAALRNVGFSIAEGIVN 652

Query: 856 ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
             +    D  E   ++     +N+R LESL+ +GA D    +R QL +S+D +  +A   
Sbjct: 653 VHSSACKDIWE--FTQNSGHTINKRALESLIKSGAFDSVHKNRKQLYESMDTLIYFANKN 710

Query: 916 EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
           +++R +    +F            +E F  E    + E+E   LGFY + HPL+ ++ +L
Sbjct: 711 KQDRESSQAALFGSLDVLKPKLENVEDFDEEE---KLEHELFSLGFYLTNHPLEKFRTLL 767

Query: 976 RKMGI 980
            K+ I
Sbjct: 768 EKLNI 772


>gi|156935300|ref|YP_001439216.1| DNA polymerase III subunit alpha [Cronobacter sakazakii ATCC BAA-894]
 gi|156533554|gb|ABU78380.1| hypothetical protein ESA_03157 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1160

 Score =  805 bits (2080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/1053 (42%), Positives = 631/1053 (59%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA AITD  NL   ++F   A   GI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPAFAITDFTNLCGLVKFYGGAHGVGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D +MQ  L   +           I +L +   GYQ L  L+SR Y    G   
Sbjct: 64   PIIGA--DFNMQCELLGDD--------FSHITVLAANNTGYQNLTLLISRAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+G EGLI+L+GG  G + +     ++ +AE+ L  +++ F DR Y+ L R
Sbjct: 114  PWIDQQWLAELG-EGLILLSGGRQGDVGKCLLRGNNVMAEQALAFYQEHFPDRYYLELVR 172

Query: 189  HRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D  R     V LA    +P+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEERYLHAAVALAEEKGIPVVATNDVRFIEPGDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL+   EM  +FSDLPEALEN+VEIARRC+  +++    LP+F   +       
Sbjct: 233  HYSPQQYLRTEEEMCELFSDLPEALENSVEIARRCNVTVRLGEYFLPKFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL          AQ   +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVMKSKEGLEERLEFLFPDPEIRAQKRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + + +E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLQEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     +D+
Sbjct: 527  PLYCDEMGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKQGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA  NGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSIFEDGAKNNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA + D  F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LIIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|317046997|ref|YP_004114645.1| DNA polymerase III subunit alpha [Pantoea sp. At-9b]
 gi|316948614|gb|ADU68089.1| DNA polymerase III, alpha subunit [Pantoea sp. At-9b]
          Length = 1160

 Score =  802 bits (2071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1057 (42%), Positives = 634/1057 (59%), Gaps = 62/1057 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G      ++ K AA   PAIAITD  NL   ++F   A  AG++
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLVKKAAALGMPAIAITDFTNLCGLVKFYGTAHGAGVK 63

Query: 69   PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PIIG   ++    M D L               + +L +   GYQ L  L+SR Y    G
Sbjct: 64   PIIGADFNVVSELMGDELT-------------QLTVLAANNTGYQNLTLLISRAYQRGYG 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   WL E   EGLI+L+GG  G + R+    ++ +  + L  +++ F DR Y+ 
Sbjct: 111  IAGPVIDRDWLAEY-QEGLILLSGGRRGDVGRSLLRGNNALVAQCLAFYQQHFPDRYYLE 169

Query: 186  LQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            L R    D   Y  S  V+LA    +P+VATN   FL+EED++AH++ +A+     +   
Sbjct: 170  LTRTGRPDEEGYLHS-AVELAIAEGVPVVATNEVCFLNEEDFDAHEIRVAIHDGYTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++ +EM  +FSD+PEALEN+VEIA+RC+  +++    LP+F   +   
Sbjct: 229  KRPRNYSPQQYMRSEAEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM-- 286

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +    Q+Y +RL+ ELNVI +M F GYFLI
Sbjct: 287  ---TTEDFLVVKSREGLEERLEFLFPDPAVRAEKRQEYDERLEIELNVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDLVIDHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---- 595
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K    
Sbjct: 523  TDFAPLYCDENGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLE 582

Query: 596  -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLDDKKSFDMLQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDIEWQHESLQPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA K G++  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFQEGAEKMGVNGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYP 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I+EA + D  F  L D C+R D+KK+NRRV+E L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAILEARNRDGYFKELFDLCARTDTKKINRRVMEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + +GA D  G  R  L+ SL++  K A    K       ++F    G  ++    E   V
Sbjct: 883  IMSGAFDRLGPHRAALMSSLNDALKAADQHAKAEAIGQADMF----GVLAE----EPEQV 934

Query: 946  ENS---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNI 995
            E S          ++ + E+  LG Y +GHP++ Y K I R +G    ++   T RG   
Sbjct: 935  EKSYASVTPWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKVT 994

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              A +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 995  VAAGLVIAARTMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|283783968|ref|YP_003363833.1| DNA polymerase III alpha subunit [Citrobacter rodentium ICC168]
 gi|282947422|emb|CBG86967.1| DNA polymerase III alpha subunit [Citrobacter rodentium ICC168]
          Length = 1160

 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1053 (42%), Positives = 635/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F     +AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D  +Q  L M ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFHVQSEL-MGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R     +S + E+ +  +++ F DR ++ L R
Sbjct: 114  PVIDRDWLIEL-NEGLILLSGGRMGDVGRGLLRGNSALVEECVAFYEQHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSADFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y++   EM  +FSD+PEALEN+VEIARRC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRTEEEMCELFSDIPEALENSVEIARRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D +   PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEQGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGARKNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I+EA  +   F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|260596604|ref|YP_003209175.1| DNA polymerase III subunit alpha [Cronobacter turicensis z3032]
 gi|260215781|emb|CBA28207.1| DNA polymerase III subunit alpha [Cronobacter turicensis z3032]
          Length = 1160

 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1053 (42%), Positives = 630/1053 (59%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA AITD  NL   ++F   A   G++
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPAFAITDFTNLCGLVKFYGGAHGVGMK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D +MQ +L   +           I +L +   GYQ L  L+SR Y    G   
Sbjct: 64   PIIGA--DFNMQCDLLGED--------FSHITVLAANNTGYQNLTLLISRAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+G EGLI+L+GG  G + +     ++ +AE+ L  +++ F DR Y+ L R
Sbjct: 114  PWIDQQWLAELG-EGLILLSGGRQGDVGKCLLRGNNVMAEQALAFYQEHFPDRYYLELVR 172

Query: 189  HRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D  R     V LA    +P+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEERYLHAAVALAEEKGVPVVATNDVRFIEPGDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL+   EM  +FSDLPEALEN+VEIARRC+  +++    LP+F   +       
Sbjct: 233  HYSPQQYLRTEEEMCELFSDLPEALENSVEIARRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +      Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVMKSKEGLEERLEFLFPDPEERVQKRPPYDERLEIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + + +E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLQEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +LD +  R  K     +D+
Sbjct: 527  PLYCDEMGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALDMINARRAKQGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSIFEDGAKNNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA + D  F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LIIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|291616361|ref|YP_003519103.1| DnaE [Pantoea ananatis LMG 20103]
 gi|291151391|gb|ADD75975.1| DnaE [Pantoea ananatis LMG 20103]
          Length = 1160

 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1056 (41%), Positives = 633/1056 (59%), Gaps = 60/1056 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G      ++ K AA   PAIAITD  NL   ++F   A  AG++
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGSAHGAGVK 63

Query: 69   PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PIIG   ++    M D L               I +L +   GYQ L  L+SR Y    G
Sbjct: 64   PIIGADFNVASELMGDELT-------------QITVLAANNTGYQNLTLLISRAYQRGYG 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   WL E+  EGLI+L+GG  G + R+    +S +    L  +++ F DR ++ 
Sbjct: 111  IAGPIIDRDWLAEL-QEGLILLSGGRRGDVGRSLLRGNSALVSDCLAFYQQHFADRYFLE 169

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R  R  +       V+LA    +P+VATN   F++EED++AH++ +A+     +    
Sbjct: 170  LVRTGRPDEESYLHAAVELAIAEGIPVVATNEVCFINEEDFDAHEIRVAIHDGYTLDDPK 229

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RPR  +P  Y+++  EM  +F+D+PEALEN+VEIA+RC+  +++    LP+F   +    
Sbjct: 230  RPRHYSPQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM--- 286

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIV 360
                E+ L  K+  GLE RLA     +   A+   +Y +RL+ ELNVI +M F GYFLIV
Sbjct: 287  --TTEDFLVMKSREGLEERLAMLFPDEAVRAEKRPEYDERLEVELNVINQMGFPGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 345  MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD+VI +V + YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P
Sbjct: 405  DFCMEKRDQVIEHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 465  PDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     
Sbjct: 524  DFAPLYCDENGQYPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLPP 583

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+
Sbjct: 584  IDIATIPLEDKKSFDMLQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPL 643

Query: 656  DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L 
Sbjct: 644  QSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  F  GA   GI   +++ IF+L+ KFA YGFNKSH+AA
Sbjct: 704  GADMLRRAMGKKKPEEMAKQRSVFKDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSAA 763

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F
Sbjct: 764  YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQF 823

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886
             V D   I Y + AIKGVG      I++A  +   F  L D C+R D+KK+NRRV+E L+
Sbjct: 824  HVNDEGEIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKLI 883

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             +GA D  G  R  L+ +L++  K A    K       ++F    G  +D    E   VE
Sbjct: 884  MSGAFDRLGPHRAALMSALNDALKAADQHAKAEAIGQADMF----GVLAD----EPEQVE 935

Query: 947  NS---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIR 996
             S          V+ + E+  LG Y +GHP++ Y K I R +G    ++   T RG    
Sbjct: 936  QSYASVTPWPEQVQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKITV 995

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             A +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 996  AAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|331645327|ref|ZP_08346438.1| DNA polymerase III subunit alpha [Escherichia coli M605]
 gi|330910034|gb|EGH38544.1| DNA polymerase 3 alpha subunit [Escherichia coli AA86]
 gi|331046084|gb|EGI18203.1| DNA polymerase III subunit alpha [Escherichia coli M605]
          Length = 1160

 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1053 (42%), Positives = 637/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGPAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA +  LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAESRSLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|327392812|dbj|BAK10234.1| DNA polymerase III alpha subunit DnaE [Pantoea ananatis AJ13355]
          Length = 1160

 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1056 (41%), Positives = 633/1056 (59%), Gaps = 60/1056 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G      ++ K AA   PAIAITD  NL   ++F   A  AG++
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHGAGVK 63

Query: 69   PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PIIG   ++    M D L               I +L +   GYQ L  L+SR Y    G
Sbjct: 64   PIIGADFNVASELMGDELT-------------QITVLAANNTGYQNLTLLISRAYQRGYG 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   WL E+  EGLI+L+GG  G + R+    +S +    L  +++ F DR ++ 
Sbjct: 111  IAGPIIDRDWLAEL-QEGLILLSGGRRGDVGRSLLRGNSALVSDCLAFYQQHFADRYFLE 169

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R  R  +       V+LA    +P+VATN   F++EED++AH++ +A+     +    
Sbjct: 170  LVRTGRPDEESYLHAAVELAIAEGIPVVATNEVCFINEEDFDAHEIRVAIHDGYTLDDPK 229

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RPR  +P  Y+++  EM  +F+D+PEALEN+VEIA+RC+  +++    LP+F   +    
Sbjct: 230  RPRHYSPQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM--- 286

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIV 360
                E+ L  K+  GLE RLA     +   A+   +Y +RL+ ELNVI +M F GYFLIV
Sbjct: 287  --TTEDFLVMKSREGLEERLAMLFPDEAVRAEKRPEYDERLEVELNVINQMGFPGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 345  MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD+VI +V + YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P
Sbjct: 405  DFCMEKRDQVIEHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 465  PDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     
Sbjct: 524  DFAPLYCDENGQYPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLPP 583

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+
Sbjct: 584  IDIATIPLEDKKSFDMLQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPL 643

Query: 656  DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L 
Sbjct: 644  QSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  F  GA   GI   +++ IF+L+ KFA YGFNKSH+AA
Sbjct: 704  GADMLRRAMGKKKPEEMAKQRSVFKDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSAA 763

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F
Sbjct: 764  YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQF 823

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886
             V D   I Y + AIKGVG      I++A  +   F  L D C+R D+KK+NRRV+E L+
Sbjct: 824  HVNDEGEIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKLI 883

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             +GA D  G  R  L+ +L++  K A    K       ++F    G  +D    E   VE
Sbjct: 884  MSGAFDRLGPHRAALMSALNDALKAADQHAKAEAIGQADMF----GVLAD----EPEQVE 935

Query: 947  NS---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIR 996
             S          V+ + E+  LG Y +GHP++ Y K I R +G    ++   T RG    
Sbjct: 936  QSYASVTPWPEQVQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKITV 995

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             A +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 996  AAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|281177409|dbj|BAI53739.1| DNA polymerase III alpha subunit [Escherichia coli SE15]
          Length = 1160

 Score =  798 bits (2061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1053 (42%), Positives = 637/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA +  LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|258627365|ref|ZP_05722149.1| DNA polymerase III subunit alpha [Vibrio mimicus VM603]
 gi|258580403|gb|EEW05368.1| DNA polymerase III subunit alpha [Vibrio mimicus VM603]
          Length = 1159

 Score =  798 bits (2061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1050 (42%), Positives = 633/1050 (60%), Gaps = 49/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   GI+
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG             T Q +     +  + +L     GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGADF----------TLQSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E   EGLI+L+GG SG I RA    + Q  EK L  ++  F D  Y+ L R
Sbjct: 114  PVIDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLELVR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   ++LA  +ELP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 173  TGRADE--ESYLHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +P  YL++ +EM  +F+D+PEALEN+VEIA+RC+  +++    LP F   E   I 
Sbjct: 231  PKNYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNF-PTEGMAI- 288

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 289  ---EDFLVMKSREGLEERLEFLFPNPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +    IA+ +  +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA + D  F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944
            AGALD  G  R  ++ S+D+  + A    +       ++F    G  +D   ++  +   
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMF----GVLTDAPEEVEQKYTQ 940

Query: 945  VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            V      VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V+
Sbjct: 941  VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVI 1000

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG +T  + +   E   +
Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|262166322|ref|ZP_06034059.1| DNA polymerase III alpha subunit [Vibrio mimicus VM223]
 gi|262026038|gb|EEY44706.1| DNA polymerase III alpha subunit [Vibrio mimicus VM223]
          Length = 1159

 Score =  798 bits (2061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1050 (42%), Positives = 634/1050 (60%), Gaps = 49/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   GI+
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG             T Q +     +  + +L     GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGADF----------TLQSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E   EGLI+L+GG SG I RA    + Q  EK L  ++  F D  Y+ L R
Sbjct: 114  PVIDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLELVR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   ++LA  +ELP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 173  TGRADE--ESYLHFALELADQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +P  YL++ +EM  +F+D+PEALEN+VEIA+RC+  +++    LP F   E   I 
Sbjct: 231  PKNYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNF-PTEGMAI- 288

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL          AQ   +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 289  ---EDFLVMKSREGLEERLEFLFPDPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +    IA+ +  +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA + D  F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944
            AGALD  G  R  ++ S+D+  + A    +       ++F    G  +D   ++  +   
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMF----GVLTDAPEEVEQKYTQ 940

Query: 945  VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            V      VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V+
Sbjct: 941  VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVI 1000

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG +T  + +   E   +
Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|258621011|ref|ZP_05716045.1| DNA polymerase III subunit alpha [Vibrio mimicus VM573]
 gi|258586399|gb|EEW11114.1| DNA polymerase III subunit alpha [Vibrio mimicus VM573]
          Length = 1159

 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1050 (42%), Positives = 634/1050 (60%), Gaps = 49/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   GI+
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG             T Q +     +  + +L     GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGADF----------TLQSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E   EGLI+L+GG SG I RA    + Q  EK L  ++  F D  Y+ L R
Sbjct: 114  PVIDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLELVR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   ++LA  +ELP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 173  TGRADE--ESYLHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +P  YL++ +EM  +F+D+PEALEN+VEIA+RC+  +++    LP F   E   I 
Sbjct: 231  PKNYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNF-PTEGMAI- 288

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL          AQ   +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 289  ---EDFLVMKSREGLEERLEFLFPDPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +    IA+ +  +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDTRSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA + D  F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944
            AGALD  G  R  ++ S+D+  + A    +       ++F    G  +D   ++  +   
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMF----GVLTDAPEEVEQKYTQ 940

Query: 945  VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            V      VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V+
Sbjct: 941  VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVI 1000

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG +T  + +   E   +
Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|262170786|ref|ZP_06038464.1| DNA polymerase III alpha subunit [Vibrio mimicus MB-451]
 gi|261891862|gb|EEY37848.1| DNA polymerase III alpha subunit [Vibrio mimicus MB-451]
          Length = 1159

 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1050 (42%), Positives = 633/1050 (60%), Gaps = 49/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   GI+
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG             T Q +     +  + +L     GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGADF----------TLQSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E   EGLI+L+GG SG I RA    + Q  EK L  ++  F D  Y+ L R
Sbjct: 114  PVIDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLELVR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   ++LA  +ELP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 173  TGRADE--ESYLHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +P  YL++ +EM  +F+D+PEALEN+VEIA+RC+  +++    LP F   E   I 
Sbjct: 231  PKNYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNF-PTEGMAI- 288

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 289  ---EDFLVMKSREGLEERLEFLFPDLEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +    IA+ +  +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA + D  F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944
            AGALD  G  R  ++ S+D+  + A    +       ++F    G  +D   ++  +   
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMF----GVLTDAPEEVEQKYTQ 940

Query: 945  VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            V      VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V+
Sbjct: 941  VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVI 1000

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG +T  + +   E   +
Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|91209254|ref|YP_539240.1| DNA polymerase III subunit alpha [Escherichia coli UTI89]
 gi|117622469|ref|YP_851382.1| DNA polymerase III subunit alpha [Escherichia coli APEC O1]
 gi|191172778|ref|ZP_03034315.1| DNA polymerase III, alpha subunit [Escherichia coli F11]
 gi|218557125|ref|YP_002390038.1| DNA polymerase III subunit alpha [Escherichia coli S88]
 gi|237704343|ref|ZP_04534824.1| DNA polymerase III subunit alpha [Escherichia sp. 3_2_53FAA]
 gi|331681569|ref|ZP_08382206.1| DNA polymerase III subunit alpha [Escherichia coli H299]
 gi|91070828|gb|ABE05709.1| DNA polymerase III alpha subunit [Escherichia coli UTI89]
 gi|115511593|gb|ABI99667.1| DNA polymerase III alpha subunit [Escherichia coli APEC O1]
 gi|190906928|gb|EDV66530.1| DNA polymerase III, alpha subunit [Escherichia coli F11]
 gi|218363894|emb|CAR01559.1| DNA polymerase III alpha subunit [Escherichia coli S88]
 gi|222032014|emb|CAP74753.1| DNA polymerase III subunit alpha [Escherichia coli LF82]
 gi|226902255|gb|EEH88514.1| DNA polymerase III subunit alpha [Escherichia sp. 3_2_53FAA]
 gi|294489552|gb|ADE88308.1| DNA polymerase III, alpha subunit [Escherichia coli IHE3034]
 gi|307629760|gb|ADN74064.1| DNA polymerase III subunit alpha [Escherichia coli UM146]
 gi|312944792|gb|ADR25619.1| DNA polymerase III subunit alpha [Escherichia coli O83:H1 str. NRG
            857C]
 gi|320196939|gb|EFW71560.1| DNA polymerase III alpha subunit [Escherichia coli WV_060327]
 gi|323950817|gb|EGB46694.1| DNA polymerase III [Escherichia coli H252]
 gi|323955145|gb|EGB50920.1| DNA polymerase III [Escherichia coli H263]
 gi|331081790|gb|EGI52951.1| DNA polymerase III subunit alpha [Escherichia coli H299]
          Length = 1160

 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1053 (42%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGTAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|218688059|ref|YP_002396271.1| DNA polymerase III subunit alpha [Escherichia coli ED1a]
 gi|306815217|ref|ZP_07449366.1| DNA polymerase III subunit alpha [Escherichia coli NC101]
 gi|331661255|ref|ZP_08362187.1| DNA polymerase III subunit alpha [Escherichia coli TA206]
 gi|218425623|emb|CAR06409.1| DNA polymerase III alpha subunit [Escherichia coli ED1a]
 gi|305850879|gb|EFM51334.1| DNA polymerase III subunit alpha [Escherichia coli NC101]
 gi|331052297|gb|EGI24336.1| DNA polymerase III subunit alpha [Escherichia coli TA206]
          Length = 1160

 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1053 (42%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGTAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLDTELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|119774291|ref|YP_927031.1| DNA polymerase III subunit alpha [Shewanella amazonensis SB2B]
 gi|119766791|gb|ABL99361.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 1157

 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1046 (41%), Positives = 627/1046 (59%), Gaps = 42/1046 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G   +  IL K  A+   AIA+TD NNL   ++F       GI+
Sbjct: 4    PRFVHLRVHSDFSMTDGLAKVKPILGKAEAEGMAAIALTDQNNLCGLVKFYSTCHDKGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG        D   +    +  F  V    +L    EGYQ L +L+S+ YL  Q +  
Sbjct: 64   PIIGA-------DFWMLVPGFEDEFCAV---TVLAMDNEGYQNLTQLISQAYLRGQVQGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            V I   WL    + G+++L+G   G + +A    ++  A      ++K F DR ++ L R
Sbjct: 114  VAIDQEWLLTYNS-GILLLSGAKEGDLGKALIKGNAAQAASLTQFYQKHFPDRYFIELIR 172

Query: 189  HRGYDRYRESQVVQLAYTHE----LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                 R  E   + +A  H     LP+VATN  +FLS ED+EAH++ +A+     ++   
Sbjct: 173  ---TGRADEETYLHMAVKHAAEVGLPVVATNQVVFLSPEDFEAHEIRVAIHDGFTLADNR 229

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP+  +   YL++  EM  +FSD+PEA+ENTVEIA+RC+  +++    LP F   E    
Sbjct: 230  RPKKYSEQQYLRSEDEMCELFSDIPEAIENTVEIAKRCNVTVRLGEYFLPNFPTGEL--- 286

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                 + L  ++  GLE RL         +    ++Y +RLD EL VI +M F GYFLIV
Sbjct: 287  --STADFLVERSKEGLEERLEFLFPDPAERAEKRKEYDERLDIELQVINQMGFPGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 345  MEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L   Y  VDR+ K+IP
Sbjct: 405  DFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVVRDVGRVLGHSYGFVDRISKMIP 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +P   ++ +A   +   +EA  AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 465  PEPGMTLA-KAFEVEPGLQEAYDADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     
Sbjct: 524  DFSPLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKLGKPP 583

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+
Sbjct: 584  VDIAAIPLDDSKSFSVLKRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643

Query: 656  DNIVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V N  +RK+G E+I        H  + P+L+ T G+I+YQEQVMQIAQ L+GY+L 
Sbjct: 644  QSGMVDNFIDRKHGHEEISYPDATWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLG 703

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  F +G+ KNG+   +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 704  GADMLRRAMGKKKPEEMAKQRAGFEAGSVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAA 763

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+KTH+P EF+AA M+ +MDN +KI     +  +  ++I+PP VN     F
Sbjct: 764  YALVSYQTLWLKTHFPSEFMAAVMSADMDNTDKIVTLVDECDRMGLKIIPPDVNKGLFKF 823

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V ++  I Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L++
Sbjct: 824  TVDEDLNIVYGIGAIKGVGEGPVEAILEARKDGPFTDLFDFCARIDLKKLNKRVIEKLIY 883

Query: 888  AGALDCFGYSRMQLLQSL-DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
            +GALD  G  R  ++ +L + +Q   Q  +   T +H+           +K    + +  
Sbjct: 884  SGALDSLGPHRASMMATLPEAMQAADQHAKAQATGQHDMFGLLNDDQQDEKQQFVECTPW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ + 
Sbjct: 944  PDKIWLEGERETLGLYLTGHPINQYLKELKNYTSGRLKDIHPTERGKTVKAAGLVVASRV 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++GS++G +T  + +   E   F
Sbjct: 1004 MLTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|254037603|ref|ZP_04871680.1| DNA polymerase III alpha subunit [Escherichia sp. 1_1_43]
 gi|226840709|gb|EEH72711.1| DNA polymerase III alpha subunit [Escherichia sp. 1_1_43]
          Length = 1160

 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1053 (41%), Positives = 637/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H ++ P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHEILKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|293403253|ref|ZP_06647350.1| DNA polymerase III alpha subunit [Escherichia coli FVEC1412]
 gi|298378789|ref|ZP_06988673.1| DNA polymerase III subunit alpha [Escherichia coli FVEC1302]
 gi|291430168|gb|EFF03182.1| DNA polymerase III alpha subunit [Escherichia coli FVEC1412]
 gi|298281123|gb|EFI22624.1| DNA polymerase III subunit alpha [Escherichia coli FVEC1302]
          Length = 1162

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1053 (42%), Positives = 638/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 6    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 66   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 116  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 174

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA +  LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 175  TGRPDEESYLHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 234

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F      D+  E
Sbjct: 235  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF---PTGDMSTE 291

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +   +R K   GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 292  DYLVMRAKE--GLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEF 349

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 350  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 409

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 410  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 469

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 470  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 528

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 529  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 589  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 648

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 649  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 708

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 709  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 768

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 769  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 828

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 829  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 888

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 889  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 940

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 941  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 1000

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 1001 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1033


>gi|218703438|ref|YP_002410957.1| DNA polymerase III subunit alpha [Escherichia coli UMN026]
 gi|218430535|emb|CAR11401.1| DNA polymerase III alpha subunit [Escherichia coli UMN026]
 gi|284919959|emb|CBG33014.1| DNA polymerase III alpha subunit [Escherichia coli 042]
          Length = 1160

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1053 (42%), Positives = 638/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA +  LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F      D+  E
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF---PTGDMSTE 289

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +   +R K   GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 290  DYLVMRAKE--GLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|292492697|ref|YP_003528136.1| DNA polymerase III subunit alpha [Nitrosococcus halophilus Nc4]
 gi|291581292|gb|ADE15749.1| DNA polymerase III, alpha subunit [Nitrosococcus halophilus Nc4]
          Length = 1158

 Score =  797 bits (2058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/1046 (43%), Positives = 637/1046 (60%), Gaps = 42/1046 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YS+++G + +  ++        PA+A+TD NN+F+ ++F + A A G++P
Sbjct: 4    SFVHLHLHTEYSMVDGLVRIRPLVRAAREAGMPAVAVTDQNNIFAMVKFYRAAQAEGVKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG   D+ + D+ + +   +        + LL     GY  L  L+SR Y   Q     
Sbjct: 64   IIGA--DVFLVDSTESSRASR--------VTLLCQNEGGYCNLSRLLSRAYSEGQYHGVP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
            R+  +WLQ   ++GLI+L+GG  G + +A    ++  A+K L  ++ LF  R Y+ L R 
Sbjct: 114  RLQWNWLQS-QSDGLIVLSGGREGDVGQALLAGNNIQAKKLLERWQALFPGRYYLELHRT 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
               G + Y    V  LA   + P+VATN+  FL  +D+EAH+  + +     +    RPR
Sbjct: 173  GREGEEDYLHGAVA-LALACDTPVVATNDVRFLRTQDFEAHEARVCIHEGRTLDDPRRPR 231

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   YL+  SEM  +F+DLPEALENTVEIARRC+  L + +  LP F   E   I+  
Sbjct: 232  HYSEQQYLRTSSEMAELFADLPEALENTVEIARRCNLELTLGSHYLPNFPVPEGLSIEAF 291

Query: 307  EENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E E R     GLE RLA+       +      Y  RL  EL VI +M F GYFLIVADF
Sbjct: 292  LEVEARR----GLEQRLAKLYPSETDREIKQPTYETRLAEELAVINQMGFPGYFLIVADF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAKKN IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+S+PDFDIDFC
Sbjct: 348  IRWAKKNGIPVGPGRGSGAGSLVAYALQITDLDPLAFDLLFERFLNPERVSLPDFDIDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RRD VI YV + YG + V+QIIT+GS+ AKA +RDVGR L  PY  VD++ KLIP D 
Sbjct: 408  MERRDRVIEYVSHYYGRDHVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDQIAKLIPFDL 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A+ +    R     +  V  L+++++KLEGL R+A  HA G+VI  + L++ V
Sbjct: 468  KMTLD-KALEESEGLRARYEEEEEVRFLIDLARKLEGLTRNAGKHAGGVVIAPKKLTEYV 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VDL 598
            P Y +  +   VTQF+   IE  GL+KFDFLGL+TLT++  +L  +    AQ+G   +DL
Sbjct: 527  PYYCEQGASGVVTQFDKDDIEAIGLVKFDFLGLRTLTIIDWALQAINQQRAQQGTAPLDL 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            +L+P +D E+Y LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+ + 
Sbjct: 587  ALLPMNDPESYALLKRCATTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSG 646

Query: 659  VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V  Y NRK+G+ K+   HP ++P+LK T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRA
Sbjct: 647  MVDDYINRKHGRAKVDYPHPALEPILKPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRA 706

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  EEM KQ+  F  GA   G+ +  A  IF+L+ KFA+YGFNKSH+AAYA+I+YQT
Sbjct: 707  MGKKKPEEMAKQRAIFTEGAKARGVEEERATAIFDLMEKFAEYGFNKSHSAAYALIAYQT 766

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRI 835
            A++K HYP  ++AA ++ +MDN EK+  F Q+ +  N++++PP VN     F   G N I
Sbjct: 767  AYLKAHYPAPYMAAVLSSDMDNTEKVAAFIQECQVMNLEVLPPDVNVSDYRFSAQGKNAI 826

Query: 836  YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y L AIKGVG      I+ E     P+  L +FC R+D +K+NRRVLE+L  +GALD  
Sbjct: 827  RYGLGAIKGVGAAALEGIIKEREQHGPYQDLFEFCRRIDLRKINRRVLEALNRSGALDPL 886

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE---KGTFSDKITLEKFSVENSSVR 951
            G +R  L  SL+     A+   +N +    ++F  +   +G+ +   T  +   E   + 
Sbjct: 887  GANRATLEASLETALALAEQHSRNTSLGQNDLFGLDCVLEGSQAGNYTETQEWDEEQRLA 946

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE--SVATIRGN---NIRLAAMVVSKQQ 1006
             E E   LG Y SGHP+D Y+  LR++  +   E  S A+ R N    + +A ++ S + 
Sbjct: 947  LEKE--TLGLYLSGHPIDRYEQELRQIAPRRLAELVSQASNRLNYNQRVIIAGLIGSVRT 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
             K R+G R  +VT  + +   E   F
Sbjct: 1005 SKARQGGRNAFVTLDDRSARLEVKTF 1030


>gi|197265397|ref|ZP_03165471.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Saintpaul str. SARA23]
 gi|197243652|gb|EDY26272.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Saintpaul str. SARA23]
          Length = 1160

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114  PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATNN  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEETYLHAAVELAEARGLPVVATNNVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|323935024|gb|EGB31397.1| DNA polymerase III [Escherichia coli E1520]
          Length = 1160

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNNGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|74310804|ref|YP_309223.1| DNA polymerase III subunit alpha [Shigella sonnei Ss046]
 gi|73854281|gb|AAZ86988.1| DNA polymerase III alpha subunit [Shigella sonnei Ss046]
          Length = 1160

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|293408276|ref|ZP_06652116.1| DNA polymerase III subunit alpha [Escherichia coli B354]
 gi|291472527|gb|EFF15009.1| DNA polymerase III subunit alpha [Escherichia coli B354]
          Length = 1162

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 6    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 66   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 116  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 174

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 175  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 234

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 235  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 289

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 290  TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 349

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 350  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 409

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 410  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 469

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 470  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 528

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 529  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 589  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 648

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 649  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 708

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 709  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 768

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 769  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 828

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 829  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 888

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 889  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 940

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 941  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 1000

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 1001 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1033


>gi|82542783|ref|YP_406730.1| DNA polymerase III subunit alpha [Shigella boydii Sb227]
 gi|81244194|gb|ABB64902.1| DNA polymerase III alpha subunit [Shigella boydii Sb227]
          Length = 1142

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNG++  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGVNAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|170682325|ref|YP_001742312.1| DNA polymerase III subunit alpha [Escherichia coli SMS-3-5]
 gi|170520043|gb|ACB18221.1| DNA polymerase III, alpha subunit [Escherichia coli SMS-3-5]
          Length = 1160

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1053 (41%), Positives = 637/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA +  LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGIRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|194428253|ref|ZP_03060795.1| DNA polymerase III, alpha subunit [Escherichia coli B171]
 gi|194413628|gb|EDX29908.1| DNA polymerase III, alpha subunit [Escherichia coli B171]
          Length = 1160

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEATYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|218547639|ref|YP_002381430.1| DNA polymerase III subunit alpha [Escherichia fergusonii ATCC 35469]
 gi|218355180|emb|CAQ87787.1| DNA polymerase III alpha subunit [Escherichia fergusonii ATCC 35469]
 gi|323975648|gb|EGB70744.1| DNA polymerase III [Escherichia coli TW10509]
 gi|324112405|gb|EGC06382.1| DNA polymerase III [Escherichia fergusonii B253]
          Length = 1160

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1053 (41%), Positives = 635/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|110640403|ref|YP_668131.1| DNA polymerase III subunit alpha [Escherichia coli 536]
 gi|110341995|gb|ABG68232.1| DNA polymerase III alpha subunit [Escherichia coli 536]
          Length = 1160

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGTAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++R++VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKREQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|194435013|ref|ZP_03067254.1| DNA polymerase III, alpha subunit [Shigella dysenteriae 1012]
 gi|194416749|gb|EDX32877.1| DNA polymerase III, alpha subunit [Shigella dysenteriae 1012]
          Length = 1160

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1053 (42%), Positives = 634/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L     GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAVNNTGYQNLTLLISKAYQRGYGPAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L   A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKSAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL N  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGNALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|153208946|ref|ZP_01947159.1| DNA polymerase III, alpha subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|212218747|ref|YP_002305534.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuK_Q154]
 gi|120575604|gb|EAX32228.1| DNA polymerase III, alpha subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|212013009|gb|ACJ20389.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuK_Q154]
          Length = 1143

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1037 (41%), Positives = 636/1037 (61%), Gaps = 39/1037 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++HS YS+++  + ++ +L +    + PA+A+TD  NLF+ ++F ++A   GI+P
Sbjct: 4    SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +   D+             V     L     G++ LI+L+SR Y+  + +  V
Sbjct: 64   IIGSELLLAEGDD-------------VFRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL +   EGLI+L+G   G + +A     S +AE+RL  +   F  R Y+ LQR 
Sbjct: 111  LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169

Query: 190  RGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R  D+  E    V++LA  H +P+VATN   FLS+ D+EAH+  + +    ++   +RPR
Sbjct: 170  R-RDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPR 228

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  Y K+  EM ++FSD+PEALENTVEIA+RCS  L +    LP+F       +   
Sbjct: 229  EYSDQQYFKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVPANLKV--- 285

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+  R +A  GL  RL    +      +DY +RL+ E+ VI +M F+ YFLIVADFI W
Sbjct: 286  -EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAW 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+++IPVGPGRGSGAGS+ AY+L IT++DPL   LLFERFLN +R+SMPDFDIDFC + 
Sbjct: 345  AKQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEG 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD VI YV  +YG E VAQIIT+G++ A+A LRDVGR L +PY  VD++ KL+P +    
Sbjct: 405  RDRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELG-- 462

Query: 487  VSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+L+   +       R A D  V  L++++ KLEGL R+A  HA G+VI    L+  VP+
Sbjct: 463  VTLEKALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPL 522

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK----VDLSL 600
            Y +  SD  VTQF+   +E  GL+KFDFLGL+TLT++  ++  + A+R ++    +D+  
Sbjct: 523  YSEPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKRKIQNETELDIGT 582

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD +TY LL +  T  +FQLES GM++ +  +QPD   DI+ALV+L+RPGP+ + +V
Sbjct: 583  IPLDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMV 642

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   K+G++ +  +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL  ADVLR AMG
Sbjct: 643  ETFIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMG 702

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM KQ+  F+ G    G+ + +A  IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW
Sbjct: 703  KKKPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAW 762

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYY 837
            +K HYP EF+AA ++ +MDN +K+  F  + R  N++++PP++N     F V    +I Y
Sbjct: 763  LKAHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVY 822

Query: 838  SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIKGVG   A +I+    A+  F  L +FCSRVD +K+NRR +E L+ +GA+D FG 
Sbjct: 823  GLGAIKGVGEAAAMNIVACREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGV 882

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENE 955
            SR  L +SL    + A+   ++      ++F  E KG   D   + ++   N S R   E
Sbjct: 883  SRASLFESLTKAFQAAEQRNRDMILGQHDLFGEEVKGIDEDYTEVPEW---NDSDRLRGE 939

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LG Y SGHPL      ++ +G       ++    N++ +A M++  +   TR G R+
Sbjct: 940  KETLGLYVSGHPLQACIKEMKAVGAVPINH-LSLSEKNSVVVAGMMMGMRTITTRSGKRM 998

Query: 1016 GWVTFSEPAKEYEANFF 1032
              ++  +   + +   F
Sbjct: 999  AILSLEDQTGKIDVTLF 1015


>gi|293476841|ref|ZP_06665249.1| DNA polymerase III subunit alpha [Escherichia coli B088]
 gi|291321294|gb|EFE60736.1| DNA polymerase III subunit alpha [Escherichia coli B088]
          Length = 1162

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 6    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 66   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 116  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 174

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 175  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 234

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 235  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 289

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 290  TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 349

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 350  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 409

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 410  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 469

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 470  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 528

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 529  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 589  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 648

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 649  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 708

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 709  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 768

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 769  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 828

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 829  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 888

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 889  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 940

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 941  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 1000

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 1001 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1033


>gi|16128177|ref|NP_414726.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
            MG1655]
 gi|89107064|ref|AP_000844.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
            W3110]
 gi|157158983|ref|YP_001461353.1| DNA polymerase III subunit alpha [Escherichia coli E24377A]
 gi|170079820|ref|YP_001729140.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
            DH10B]
 gi|188493055|ref|ZP_03000325.1| DNA polymerase III, alpha subunit [Escherichia coli 53638]
 gi|193063148|ref|ZP_03044239.1| DNA polymerase III, alpha subunit [Escherichia coli E22]
 gi|209917374|ref|YP_002291458.1| DNA polymerase III subunit alpha [Escherichia coli SE11]
 gi|218552765|ref|YP_002385678.1| DNA polymerase III subunit alpha [Escherichia coli IAI1]
 gi|218693649|ref|YP_002401316.1| DNA polymerase III subunit alpha [Escherichia coli 55989]
 gi|238899582|ref|YP_002925378.1| DNA polymerase III alpha subunit [Escherichia coli BW2952]
 gi|256021616|ref|ZP_05435481.1| DNA polymerase III subunit alpha [Shigella sp. D9]
 gi|256025496|ref|ZP_05439361.1| DNA polymerase III subunit alpha [Escherichia sp. 4_1_40B]
 gi|260842416|ref|YP_003220194.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O103:H2 str.
            12009]
 gi|293418069|ref|ZP_06660691.1| DNA polymerase III subunit alpha [Escherichia coli B185]
 gi|307136784|ref|ZP_07496140.1| DNA polymerase III subunit alpha [Escherichia coli H736]
 gi|307311368|ref|ZP_07591010.1| DNA polymerase III, alpha subunit [Escherichia coli W]
 gi|331640638|ref|ZP_08341786.1| DNA polymerase III subunit alpha [Escherichia coli H736]
 gi|331666425|ref|ZP_08367306.1| DNA polymerase III subunit alpha [Escherichia coli TA271]
 gi|331680763|ref|ZP_08381422.1| DNA polymerase III subunit alpha [Escherichia coli H591]
 gi|118794|sp|P10443|DPO3A_ECOLI RecName: Full=DNA polymerase III subunit alpha
 gi|146663|gb|AAC36920.1| DNA polymerase III holoenzyme, alpha subunit [Escherichia coli]
 gi|1552761|gb|AAB08613.1| DNA polymerase III alpha chain [Escherichia coli]
 gi|1786381|gb|AAC73295.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
            MG1655]
 gi|4902925|dbj|BAA77859.1| DNA polymerase III alpha subunit [Escherichia coli str. K12 substr.
            W3110]
 gi|157081013|gb|ABV20721.1| DNA polymerase III, alpha subunit [Escherichia coli E24377A]
 gi|169887655|gb|ACB01362.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
            DH10B]
 gi|188488254|gb|EDU63357.1| DNA polymerase III, alpha subunit [Escherichia coli 53638]
 gi|192931056|gb|EDV83659.1| DNA polymerase III, alpha subunit [Escherichia coli E22]
 gi|209910633|dbj|BAG75707.1| DNA polymerase III alpha subunit [Escherichia coli SE11]
 gi|218350381|emb|CAU96064.1| DNA polymerase III alpha subunit [Escherichia coli 55989]
 gi|218359533|emb|CAQ97071.1| DNA polymerase III alpha subunit [Escherichia coli IAI1]
 gi|238860829|gb|ACR62827.1| DNA polymerase III alpha subunit [Escherichia coli BW2952]
 gi|257757563|dbj|BAI29060.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O103:H2 str.
            12009]
 gi|260450613|gb|ACX41035.1| DNA polymerase III, alpha subunit [Escherichia coli DH1]
 gi|291430787|gb|EFF03785.1| DNA polymerase III subunit alpha [Escherichia coli B185]
 gi|306908347|gb|EFN38845.1| DNA polymerase III, alpha subunit [Escherichia coli W]
 gi|315059402|gb|ADT73729.1| DNA polymerase III alpha subunit [Escherichia coli W]
 gi|315134874|dbj|BAJ42033.1| DNA polymerase III subunit alpha [Escherichia coli DH1]
 gi|320200290|gb|EFW74876.1| DNA polymerase III alpha subunit [Escherichia coli EC4100B]
 gi|323380039|gb|ADX52307.1| DNA polymerase III, alpha subunit [Escherichia coli KO11]
 gi|323939940|gb|EGB36138.1| DNA polymerase III [Escherichia coli E482]
 gi|323945661|gb|EGB41710.1| DNA polymerase III [Escherichia coli H120]
 gi|323970663|gb|EGB65919.1| DNA polymerase III [Escherichia coli TA007]
 gi|324118304|gb|EGC12199.1| DNA polymerase III [Escherichia coli E1167]
 gi|331040384|gb|EGI12591.1| DNA polymerase III subunit alpha [Escherichia coli H736]
 gi|331066636|gb|EGI38513.1| DNA polymerase III subunit alpha [Escherichia coli TA271]
 gi|331072226|gb|EGI43562.1| DNA polymerase III subunit alpha [Escherichia coli H591]
 gi|332105210|gb|EGJ08556.1| DNA polymerase subunit III alpha [Shigella sp. D9]
          Length = 1160

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|15799866|ref|NP_285878.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 EDL933]
 gi|15829440|ref|NP_308213.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            Sakai]
 gi|168752166|ref|ZP_02777188.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4113]
 gi|168758707|ref|ZP_02783714.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4401]
 gi|168764953|ref|ZP_02789960.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4501]
 gi|168769951|ref|ZP_02794958.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4486]
 gi|168777708|ref|ZP_02802715.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4196]
 gi|168782076|ref|ZP_02807083.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4076]
 gi|168789293|ref|ZP_02814300.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC869]
 gi|168802470|ref|ZP_02827477.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC508]
 gi|195939880|ref|ZP_03085262.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            EC4024]
 gi|208806614|ref|ZP_03248951.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4206]
 gi|208812760|ref|ZP_03254089.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4045]
 gi|208820436|ref|ZP_03260756.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4042]
 gi|209398477|ref|YP_002268792.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4115]
 gi|217326041|ref|ZP_03442125.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            TW14588]
 gi|254791317|ref|YP_003076154.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            TW14359]
 gi|261226938|ref|ZP_05941219.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
            FRIK2000]
 gi|261255342|ref|ZP_05947875.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
            FRIK966]
 gi|81848972|sp|Q8X8X5|DPO3A_ECO57 RecName: Full=DNA polymerase III subunit alpha
 gi|12512912|gb|AAG54486.1|AE005194_7 DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EDL933]
 gi|13359642|dbj|BAB33609.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
            Sakai]
 gi|187767109|gb|EDU30953.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4196]
 gi|188013925|gb|EDU52047.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4113]
 gi|189000426|gb|EDU69412.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4076]
 gi|189354514|gb|EDU72933.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4401]
 gi|189361079|gb|EDU79498.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4486]
 gi|189365137|gb|EDU83553.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4501]
 gi|189371108|gb|EDU89524.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC869]
 gi|189375552|gb|EDU93968.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC508]
 gi|208726415|gb|EDZ76016.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4206]
 gi|208734037|gb|EDZ82724.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4045]
 gi|208740559|gb|EDZ88241.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4042]
 gi|209159877|gb|ACI37310.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4115]
 gi|209745704|gb|ACI71159.1| DNA polymerase III alpha subunit [Escherichia coli]
 gi|209745706|gb|ACI71160.1| DNA polymerase III alpha subunit [Escherichia coli]
 gi|209745708|gb|ACI71161.1| DNA polymerase III alpha subunit [Escherichia coli]
 gi|209745712|gb|ACI71163.1| DNA polymerase III alpha subunit [Escherichia coli]
 gi|217322262|gb|EEC30686.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            TW14588]
 gi|254590717|gb|ACT70078.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
            TW14359]
 gi|320190290|gb|EFW64940.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
            EC1212]
 gi|320644760|gb|EFX13804.1| DNA polymerase III subunit alpha [Escherichia coli O157:H- str.
            493-89]
 gi|320652916|gb|EFX21154.1| DNA polymerase III subunit alpha [Escherichia coli O157:H- str. H
            2687]
 gi|320658304|gb|EFX26033.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str.
            3256-97 TW 07815]
 gi|320668927|gb|EFX35722.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            LSU-61]
 gi|326339761|gb|EGD63569.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. 1044]
 gi|326345095|gb|EGD68838.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. 1125]
          Length = 1160

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|157159649|ref|YP_001456967.1| DNA polymerase III subunit alpha [Escherichia coli HS]
 gi|191167047|ref|ZP_03028869.1| DNA polymerase III, alpha subunit [Escherichia coli B7A]
 gi|194439917|ref|ZP_03071979.1| DNA polymerase III, alpha subunit [Escherichia coli 101-1]
 gi|253774789|ref|YP_003037620.1| DNA polymerase III subunit alpha [Escherichia coli
            'BL21-Gold(DE3)pLysS AG']
 gi|254160303|ref|YP_003043411.1| DNA polymerase III subunit alpha [Escherichia coli B str. REL606]
 gi|331651089|ref|ZP_08352117.1| DNA polymerase III subunit alpha [Escherichia coli M718]
 gi|157065329|gb|ABV04584.1| DNA polymerase III, alpha subunit [Escherichia coli HS]
 gi|190902940|gb|EDV62667.1| DNA polymerase III, alpha subunit [Escherichia coli B7A]
 gi|194421163|gb|EDX37188.1| DNA polymerase III, alpha subunit [Escherichia coli 101-1]
 gi|242376015|emb|CAQ30698.1| DNA polymerase III, alpha subunit, subunit of DNA polymerase III,
            core enzyme and DNA polymerase III, holoenzyme
            [Escherichia coli BL21(DE3)]
 gi|253325833|gb|ACT30435.1| DNA polymerase III, alpha subunit [Escherichia coli
            'BL21-Gold(DE3)pLysS AG']
 gi|253972204|gb|ACT37875.1| DNA polymerase III subunit alpha [Escherichia coli B str. REL606]
 gi|253976413|gb|ACT42083.1| DNA polymerase III subunit alpha [Escherichia coli BL21(DE3)]
 gi|309700392|emb|CBI99680.1| DNA polymerase III alpha subunit [Escherichia coli ETEC H10407]
 gi|323959945|gb|EGB55592.1| DNA polymerase III [Escherichia coli H489]
 gi|331051543|gb|EGI23592.1| DNA polymerase III subunit alpha [Escherichia coli M718]
          Length = 1160

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|218698604|ref|YP_002406233.1| DNA polymerase III subunit alpha [Escherichia coli IAI39]
 gi|218368590|emb|CAR16327.1| DNA polymerase III alpha subunit [Escherichia coli IAI39]
          Length = 1160

 Score =  795 bits (2054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGIRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|193067721|ref|ZP_03048688.1| DNA polymerase III, alpha subunit [Escherichia coli E110019]
 gi|192959133|gb|EDV89569.1| DNA polymerase III, alpha subunit [Escherichia coli E110019]
          Length = 1160

 Score =  795 bits (2054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHENLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|118580484|ref|YP_901734.1| DNA polymerase III, alpha subunit [Pelobacter propionicus DSM 2379]
 gi|118503194|gb|ABK99676.1| DNA polymerase III, alpha subunit [Pelobacter propionicus DSM 2379]
          Length = 1184

 Score =  795 bits (2054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1048 (41%), Positives = 638/1048 (60%), Gaps = 30/1048 (2%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            +Q+  ++P FVHL VH+ YSLL+GA+ L +++ K  A   PA+AITD  N+F A+EF  K
Sbjct: 7    SQHPPQAP-FVHLHVHTQYSLLDGAIRLEDLIAKAKAHNMPALAITDHGNMFGAVEFYLK 65

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
               AGI+P+IGC++ I   D+       +        ++LL    +GY+ L  L S  Y 
Sbjct: 66   CKKAGIKPLIGCEVYI-APDSRFSRESTRGISEAAYHLILLCENMQGYRNLSYLTSAGY- 123

Query: 122  LDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
              +G     RI    LQE  +EGLI L+    G +    F +    A +    + +LF D
Sbjct: 124  -KEGFYYRPRIDRELLQE-HSEGLIALSACLKGEVAMQCFRDRMDDALETARWYSQLFPD 181

Query: 181  RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R Y+ LQ +   ++     +++++A T +LPLVATN+  +L+ ED  AH+VL+ +     
Sbjct: 182  RYYIELQENTLPEQDVVNKRLMEVAATLQLPLVATNDCHYLNREDARAHEVLLCIQTGKT 241

Query: 240  VSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-----QVHAPILP 293
            +S     + + +  Y+K+  EMV+ F   PEA+ NT++IA RC   L     + H P   
Sbjct: 242  MSDPSHMKFSAEEFYVKSPEEMVAAFGYAPEAVSNTLKIADRCDLKLPLDTGEYHFPHFD 301

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVR----LAQGAIAKGYHAQDYRQRLDFELNVIA 349
                K  DD+       L   AV GL+ R    LA+         Q Y +RL  EL  I 
Sbjct: 302  PPAGKNHDDM-------LEELAVQGLKERMVTILAKYPDMSLERRQAYFERLQIELKCIR 354

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M+F  YFLIV+DFI WAK   IPVGPGRGS AGS+ AYA+ ITD+DPL ++LLFERFLN
Sbjct: 355  EMQFPAYFLIVSDFITWAKNKGIPVGPGRGSAAGSLVAYAIRITDLDPLPYNLLFERFLN 414

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R++MPD D+DFCQDRR+EVI+YV  KYG ERV QIITFG+++AKA +RDVGRAL M Y
Sbjct: 415  PERITMPDIDVDFCQDRREEVIQYVIEKYGRERVCQIITFGTMKAKAVVRDVGRALNMTY 474

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
              VDR+ KLIP+D    ++ +A+  + +  E    DP V  LL+ +  LEGL RHASTHA
Sbjct: 475  GDVDRIAKLIPDDLKMTLA-KALKQEPQLNEMAERDPQVRDLLDTALCLEGLTRHASTHA 533

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            AG+V+  R L + +P+Y+D ++    TQ++MK++E  GL+KFDFLGLK LT+++ ++  +
Sbjct: 534  AGVVVAPRQLEEFLPVYKDQKTGSINTQYSMKYVEMVGLVKFDFLGLKNLTVIENAVHLV 593

Query: 590  -AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             A +    D++ +  DD E+Y L+++  T GIFQLESSGM++ L  ++P C ED+IA  +
Sbjct: 594  RAGKDPDFDITRLRDDDSESYDLISSGNTTGIFQLESSGMKEMLVKLKPSCFEDVIAACA 653

Query: 649  LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            LYRPGP+   +V  +  RK+G++K+V   P ++P+LK+T GVI+YQEQVMQI++ L+GYS
Sbjct: 654  LYRPGPLGCGMVDEFIERKHGRQKVVYDLPQLEPILKDTYGVIVYQEQVMQISRTLAGYS 713

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK    M K+KE F+ GA   GI    A  IF+ +AKFA+YGFNKSH+
Sbjct: 714  LGRADLLRRAMGKKDPAVMAKEKEPFLEGAKAQGIDPKKAEAIFDQMAKFAEYGFNKSHS 773

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA+I+YQTAW+K+HYPVEFLAA +T +MD+ +K+ K   D R+  I+++PP VN   +
Sbjct: 774  AAYALIAYQTAWLKSHYPVEFLAALLTCDMDSTDKVIKNINDCREQGIEVLPPDVNKSGL 833

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             F V  N + + L A+KGVGT     I+EA  D PF  + DFC RVD ++ N++VLE+L+
Sbjct: 834  TFTVVGNSMRFGLGAVKGVGTGAVEAILEARQDGPFKDVYDFCERVDMRRSNKKVLEALI 893

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFS 944
              GA D     R  +++ L+    + Q +++ R +   ++F  ++   S  +   L    
Sbjct: 894  KCGAFDSTNAPRAAMMEGLETAMNFGQRIQQERASAQVSLFGDDEVARSGGNGHRLPDVP 953

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   +   E+  LGF  +GHPLD Y   ++++             G  IR+  +V S 
Sbjct: 954  EWHDKEKLALEKEALGFLITGHPLDRYVDDIKRLNCVEISRLTEQADGGEIRVCGIVSSL 1013

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++  T+KG R+G+VT  +     E   F
Sbjct: 1014 KEITTKKGDRMGFVTIEDLTGSVEVTVF 1041


>gi|88608539|ref|YP_506064.1| DNA polymerase III, alpha subunit [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600708|gb|ABD46176.1| DNA polymerase III, alpha subunit [Neorickettsia sennetsu str.
           Miyayama]
          Length = 1077

 Score =  795 bits (2054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/975 (45%), Positives = 609/975 (62%), Gaps = 70/975 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +FVHL+V S YSLL        I+D   A   PA+A+TD + +  ALEF++ A A+GIQP
Sbjct: 5   TFVHLRVRSDYSLLRAVTKPRRIVDLARAAGMPAVALTDIDTMAGALEFAEYAKASGIQP 64

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS-TAEGYQRLIELVSRMYLLDQGKQS 128
           IIG  L I                  V S VLL++   EGY  +I+L         G  S
Sbjct: 65  IIGIDLSISHN--------------RVDSRVLLIAKNEEGYHNMIKL--------SGIVS 102

Query: 129 VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNS----SQVAEKRLLTFKKLFGDRL 182
           +R     L E+ T  +GLI+L G         FF ++    S  AE  +   K++FG  L
Sbjct: 103 LRRV--ALNEVFTHSKGLILLLG--------EFFIDAINSYSIDAETLVSDLKQVFGKDL 152

Query: 183 YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           +V +QR    ++  E +++QL Y H +P VATN+ LF   +  EAHDVL  +   T V+ 
Sbjct: 153 FVEIQRLG--NQSAEEKLIQLGYEHNIPFVATNDVLFPDTDFREAHDVLTCIGSLTYVND 210

Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +R   +P+ Y K+  EM+++F+DL EAL NTV IARRCSF+ +V +PILP+F   EC  
Sbjct: 211 INRVHYSPESYFKSAEEMIALFADLKEALHNTVLIARRCSFMPEVRSPILPKF---EC-- 265

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            + +E +ELR  +  GL  R+           Q+Y  RL++EL +I  M ++GYFLIVAD
Sbjct: 266 -EMDESDELRRLSYIGLHRRMGADV------PQNYLDRLEYELGIIIDMNYAGYFLIVAD 318

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           FI+W+K N I VGPGRGSG GS+ A+ L IT +DPL+F+L FERFLNP R+SMPDFD+DF
Sbjct: 319 FIRWSKANGIVVGPGRGSGVGSIVAWCLGITGLDPLKFALFFERFLNPVRVSMPDFDVDF 378

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           CQ++R  VI YV+ KYGH  VAQI+TFG+LQ +AALRDVGR LQ+PY +VDR+CK+IPN+
Sbjct: 379 CQEKRHLVIEYVRKKYGH--VAQIMTFGTLQPRAALRDVGRVLQLPYGRVDRICKMIPNN 436

Query: 483 PAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
           PA+P+SLQ AI  D   +     D S+ +LL+++ KLEG  RH STHAAGIVI D P+  
Sbjct: 437 PANPISLQEAINLDKDLQRESEDDESIAKLLDLALKLEGTLRHTSTHAAGIVISDTPIED 496

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            +P+Y D  SD+PVTQ++MK++EKAGLIKFDFLGLKTLT++ ++   +  +    D+  I
Sbjct: 497 YLPVYHDKESDIPVTQYSMKYVEKAGLIKFDFLGLKTLTVINQACLLVRLKNPNFDIDSI 556

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
           P DD  TY LL+    +G+FQL+++ M + L+ + PDC EDIIAL+SL RPGP+ NI  Y
Sbjct: 557 PLDDKRTYDLLSAGNAIGVFQLDNAYMCETLKRLHPDCFEDIIALISLNRPGPMANIPTY 616

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK+GKE +   HPL++  LKET GV+IYQEQVM++ +LL+GY+L+EAD+LRR MGKKI
Sbjct: 617 IARKHGKEAVKYPHPLLESSLKETFGVVIYQEQVMEMVRLLAGYTLAEADILRRVMGKKI 676

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
           + EM +Q E+F+ GA +NGI    A  IFE++ KFA YGFNKSHAAAYA+ISYQTA++K 
Sbjct: 677 RAEMSEQAEKFVEGAKRNGIETERAQEIFEMIEKFAGYGFNKSHAAAYALISYQTAFLKA 736

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           ++P+EF  A++ LE+ + +K+    QDA+ + I I+PP +N   + F + DN I YSLAA
Sbjct: 737 NFPIEFTTAALNLELHHTDKLAILIQDAKNYGITILPPDINKSKILFSIEDNAIRYSLAA 796

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           +K VG   A  I   S   PF ++ +    +D K ++R+ +ESL+ +GA D     R  L
Sbjct: 797 LKNVGEAAASAIQRRS---PFATIPELQRCLDGKIVHRKAVESLIKSGATDVLSPDRSGL 853

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
              L       + V K        +F          +    F  E +   F+      GF
Sbjct: 854 YSCL------KELVGKEDDGAQMTLFDISVNKPEKTVKPWNF-FERTQCEFD----AFGF 902

Query: 962 YFSGHPLDVYKPILR 976
           +   HPL  Y+  L+
Sbjct: 903 FLFDHPLFPYRKFLK 917


>gi|331671690|ref|ZP_08372488.1| DNA polymerase III subunit alpha [Escherichia coli TA280]
 gi|331071535|gb|EGI42892.1| DNA polymerase III subunit alpha [Escherichia coli TA280]
          Length = 1160

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1053 (42%), Positives = 637/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F      D+  E
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF---PTGDMSTE 289

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +   +R K   GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 290  DYLVMRAKE--GLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|260866333|ref|YP_003232735.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O111:H- str.
            11128]
 gi|257762689|dbj|BAI34184.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O111:H- str.
            11128]
          Length = 1160

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGVAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|320639990|gb|EFX09575.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            G5101]
          Length = 1160

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTVPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|154706370|ref|YP_001424773.1| DNA polymerase III alpha subunit [Coxiella burnetii Dugway 5J108-111]
 gi|154355656|gb|ABS77118.1| DNA polymerase III alpha subunit [Coxiella burnetii Dugway 5J108-111]
          Length = 1143

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1037 (41%), Positives = 633/1037 (61%), Gaps = 39/1037 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++HS YS+++  + ++ +L +    + PA+A+TD  NLF+ ++F ++A   GI+P
Sbjct: 4    SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +   D+             V     L     G++ LI+L+SR Y+  + +  V
Sbjct: 64   IIGSELLLAEGDD-------------VFRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL +   EGLI+L+G   G + +A     S +AE+RL  +   F  R Y+ LQR 
Sbjct: 111  LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169

Query: 190  RGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R  D+  E    V++LA  H +P+VATN   FLS+ D+EAH+  + +    ++   +RPR
Sbjct: 170  R-RDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPR 228

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  Y K+  EM ++FSD+PEALENTVEIA+RCS  L +    LP+F       +   
Sbjct: 229  EYSDQQYFKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVPANLKV--- 285

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+  R +A  GL  RL    +      +DY +RL+ E+ VI +M F+ YFLIVADFI W
Sbjct: 286  -EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAW 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+++IPVGPGRGSGAGS+ AY+L IT++DPL   LLFERFLN +R+SMPDFDIDFC + 
Sbjct: 345  AKQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEG 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD VI YV  +YG E VAQIIT+G++ A+A LRDVGR L +PY  VD++ KL+P +    
Sbjct: 405  RDRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELG-- 462

Query: 487  VSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+L+   +       R A D  V  L++++ KLEGL R+A  HA G+VI    L+  VP+
Sbjct: 463  VTLEKALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPL 522

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDLSL 600
            Y +  SD  VTQF+   +E  GL+KFDFLGL+TLT++  ++  +      Q   ++D+  
Sbjct: 523  YSEPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKCKIQNETELDIGT 582

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD +TY LL +  T  +FQLES GM++ +  +QPD   DI+ALV+L+RPGP+ + +V
Sbjct: 583  IPLDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMV 642

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   K+G++ +  +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL  ADVLR AMG
Sbjct: 643  ETFIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMG 702

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM KQ+  F+ G    G+ + +A  IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW
Sbjct: 703  KKKPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAW 762

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYY 837
            +K HYP EF+AA ++ +MDN +K+  F  + R  N++++PP++N     F V    +I Y
Sbjct: 763  LKAHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVY 822

Query: 838  SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIKGVG   A +I+    A+  F  L +FCSRVD +K+NRR +E L+ +GA+D FG 
Sbjct: 823  GLGAIKGVGEAAAMNIVACREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGV 882

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENE 955
            SR  L +SL    + A+   ++      ++F  E KG   D   + ++   N S R   E
Sbjct: 883  SRASLFESLTKAFQAAEQRNRDMILGQHDLFGEEVKGIDEDYTEVPEW---NDSDRLRGE 939

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LG Y SGHPL      ++ +G       ++    N++ +A M++  +   TR G R+
Sbjct: 940  KETLGLYVSGHPLQACIKEMKAVGAVPINH-LSLSEKNSVVVAGMMMGMRTITTRSGKRM 998

Query: 1016 GWVTFSEPAKEYEANFF 1032
              ++  +   + +   F
Sbjct: 999  AILSLEDQTGKIDVTLF 1015


>gi|29654634|ref|NP_820326.1| DNA polymerase III alpha subunit [Coxiella burnetii RSA 493]
 gi|29541902|gb|AAO90840.1| DNA polymerase III alpha subunit [Coxiella burnetii RSA 493]
          Length = 1143

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1037 (41%), Positives = 636/1037 (61%), Gaps = 39/1037 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++HS YS+++  + ++ +L +    + PA+A+TD  NLF+ ++F ++A   GI+P
Sbjct: 4    SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +   D+             V     L     G++ LI+L+SR Y+  + +  V
Sbjct: 64   IIGSELLLAEGDD-------------VFRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL +   EGLI+L+G   G + +A     S +AE+RL  +   F  R Y+ LQR 
Sbjct: 111  LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169

Query: 190  RGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R  D+  E    V++LA  H +P+VATN   FLS+ D+EAH+  + +    ++   +RPR
Sbjct: 170  R-RDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPR 228

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  Y K+  EM ++FSD+PEALENTVEIA+RCS  L +    LP+F       +   
Sbjct: 229  EYSDQQYFKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLDEVFLPKFPVPANLKV--- 285

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+  R +A  GL  RL    +      +DY +RL+ E+ VI +M F+ YFLIVADFI W
Sbjct: 286  -EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAW 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+++IPVGPGRGSGAGS+ AY+L IT++DPL   LLFERFLN +R+SMPDFDIDFC + 
Sbjct: 345  AKQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEG 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD VI YV  +YG E VAQIIT+G++ A+A LRDVGR L +PY  VD++ KL+P +    
Sbjct: 405  RDRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELG-- 462

Query: 487  VSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+L+   +       R A D  V  L++++ KLEGL R+A  HA G+VI    L+  VP+
Sbjct: 463  VTLEKALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPL 522

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK----VDLSL 600
            Y +  SD  VTQF+   +E  GL+KFDFLGL+TLT++  ++  + A+R ++    +D+  
Sbjct: 523  YSEPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKRKIQNETELDIGT 582

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD +TY LL +  T  +FQLES GM++ +  +QPD   DI+ALV+L+RPGP+ + +V
Sbjct: 583  IPLDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMV 642

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   K+G++ +  +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL  ADVLR AMG
Sbjct: 643  ETFIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMG 702

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM KQ+  F+ G    G+ + +A  IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW
Sbjct: 703  KKKPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAW 762

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYY 837
            +K HYP EF+AA ++ +MDN +K+  F  + R  N++++PP++N     F V    +I Y
Sbjct: 763  LKAHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVY 822

Query: 838  SLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIKGVG   A +I+    A+  F  L +FCSRVD +K+NRR +E L+ +GA+D FG 
Sbjct: 823  GLGAIKGVGEAAAMNIVAYREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGV 882

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENE 955
            SR  L +SL    + A+   ++      ++F  E KG   D   + ++   N S R   E
Sbjct: 883  SRASLFESLTKAFQAAEQRNRDMILGQHDLFGEEVKGIDEDYTEVPEW---NDSDRLRGE 939

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LG Y SGHPL      ++ +G       ++    N++ +A M++  +   TR G R+
Sbjct: 940  KETLGLYVSGHPLQACIKEMKAVGAVPINH-LSLSEKNSVVVAGMMMGMRTITTRSGKRM 998

Query: 1016 GWVTFSEPAKEYEANFF 1032
              ++  +   + +   F
Sbjct: 999  AILSLEDQTGKIDVTLF 1015


>gi|331661558|ref|ZP_08362482.1| DNA polymerase III subunit alpha [Escherichia coli TA143]
 gi|331061473|gb|EGI33436.1| DNA polymerase III subunit alpha [Escherichia coli TA143]
          Length = 1160

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1053 (42%), Positives = 637/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F      D+  E
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF---PTGDMSTE 289

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +   +R K   GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 290  DYLVMRAKE--GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|291281006|ref|YP_003497824.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str.
            CB9615]
 gi|209745710|gb|ACI71162.1| DNA polymerase III alpha subunit [Escherichia coli]
 gi|290760879|gb|ADD54840.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str.
            CB9615]
 gi|320663614|gb|EFX30898.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str. USDA
            5905]
          Length = 1160

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1053 (41%), Positives = 635/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F           
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGNM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|161830648|ref|YP_001597182.1| DNA polymerase III, alpha subunit [Coxiella burnetii RSA 331]
 gi|161762515|gb|ABX78157.1| DNA polymerase III, alpha subunit [Coxiella burnetii RSA 331]
          Length = 1143

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1037 (41%), Positives = 636/1037 (61%), Gaps = 39/1037 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++HS YS+++  + ++ +L +    + PA+A+TD  NLF+ ++F ++A   GI+P
Sbjct: 4    SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +   D+             V     L     G++ LI+L+SR Y+  + +  V
Sbjct: 64   IIGSELLLAEGDD-------------VFRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL +   EGLI+L+G   G + +A     S +AE+RL  +   F  R Y+ LQR 
Sbjct: 111  LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169

Query: 190  RGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R  D+  E    V++LA  H +P+VATN   FLS+ D+EAH+  + +    ++   +RPR
Sbjct: 170  R-RDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPR 228

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  Y K+  EM ++FSD+PEALENTVEIA+RCS  L +    LP+F       +   
Sbjct: 229  EYSDQQYFKSAEEMKALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVPANLKV--- 285

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+  R +A  GL  RL    +      +DY +RL+ E+ VI +M F+ YFLIVADFI W
Sbjct: 286  -EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAW 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+++IPVGPGRGSGAGS+ AY+L IT++DPL   LLFERFLN +R+SMPDFDIDFC + 
Sbjct: 345  AKQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEG 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD VI YV  +YG E VAQIIT+G++ A+A LRDVGR L +PY  VD++ KL+P +    
Sbjct: 405  RDRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELG-- 462

Query: 487  VSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+L+   +       R A D  V  L++++ KLEGL R+A  HA G+VI    L+  VP+
Sbjct: 463  VTLEKALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPL 522

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK----VDLSL 600
            Y +  SD  VTQF+   +E  GL+KFDFLGL+TLT++  ++  + A+R ++    +D+  
Sbjct: 523  YSEPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKRKIQNETELDIGT 582

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD +TY LL +  T  +FQLES GM++ +  +QPD   DI+ALV+L+RPGP+ + +V
Sbjct: 583  IPLDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMV 642

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   K+G++ +  +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL  ADVLR AMG
Sbjct: 643  ETFIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMG 702

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM KQ+  F+ G    G+ + +A  IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW
Sbjct: 703  KKKPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAW 762

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYY 837
            +K HYP EF+AA ++ +MDN +K+  F  + R  N++++PP++N     F V    +I Y
Sbjct: 763  LKAHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVY 822

Query: 838  SLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIKGVG   A +I+    A+  F  L +FCSRVD +K+NRR +E L+ +GA+D FG 
Sbjct: 823  GLGAIKGVGEAAAMNIVAYREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGV 882

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENE 955
            SR  L +SL    + A+   ++      ++F  E KG   D   + ++   N S R   E
Sbjct: 883  SRASLFESLTKALQAAEQRNRDMILGQHDLFGEEVKGIDEDYTEVPEW---NDSDRLRGE 939

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LG Y SGHPL      ++ +G       ++    N++ +A M++  +   TR G R+
Sbjct: 940  KETLGLYVSGHPLQACIKEMKAVGAVPINH-LSLSEKNSVVVAGMMMGMRTITTRSGKRM 998

Query: 1016 GWVTFSEPAKEYEANFF 1032
              ++  +   + +   F
Sbjct: 999  AILSLEDQTGKIDVTLF 1015


>gi|153952|gb|AAA27057.1| polymerase III polymerase subunit (dnaE) [Salmonella enterica subsp.
            enterica serovar Typhimurium]
          Length = 1160

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114  PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQTDMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|26246130|ref|NP_752169.1| DNA polymerase III subunit alpha [Escherichia coli CFT073]
 gi|227884903|ref|ZP_04002708.1| DNA polymerase III subunit alpha [Escherichia coli 83972]
 gi|81846737|sp|Q8FL05|DPO3A_ECOL6 RecName: Full=DNA polymerase III subunit alpha
 gi|26106527|gb|AAN78713.1|AE016755_213 DNA polymerase III alpha subunit [Escherichia coli CFT073]
 gi|227838041|gb|EEJ48507.1| DNA polymerase III subunit alpha [Escherichia coli 83972]
 gi|307552034|gb|ADN44809.1| DNA polymerase III alpha subunit [Escherichia coli ABU 83972]
 gi|323964923|gb|EGB60389.1| DNA polymerase III [Escherichia coli M863]
 gi|327255163|gb|EGE66766.1| DNA polymerase III subunit alpha [Escherichia coli STEC_7v]
          Length = 1160

 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1053 (41%), Positives = 635/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNIGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|212212283|ref|YP_002303219.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuG_Q212]
 gi|212010693|gb|ACJ18074.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuG_Q212]
          Length = 1143

 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1037 (41%), Positives = 635/1037 (61%), Gaps = 39/1037 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++HS YS+++  + ++ +L +    + PA+A+TD  NLF+ ++F ++A   GI+P
Sbjct: 4    SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +   D+             V     L     G++ LI+L+SR Y+  + +  V
Sbjct: 64   IIGSELLLAEGDD-------------VFRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL +   EGLI+L+G   G + +A     S +AE+RL  +   F  R Y+ LQR 
Sbjct: 111  LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169

Query: 190  RGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R  D+  E    V++LA  H +P+VATN   FLS+ D+EAH+  + +    ++   +RPR
Sbjct: 170  R-RDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPR 228

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  Y K+  EM ++FSD+PEALENTVEIA+RCS  L +    LP+F       +   
Sbjct: 229  EYSDQQYFKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVPANLKV--- 285

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+  R +A  GL  RL    +      +DY +RL+ E+ VI +M F+ YFLIVADFI W
Sbjct: 286  -EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAW 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+++IPVGPGRGSGAGS+ AY+L IT++DPL   LLFERFLN +R+SMPDFDIDFC + 
Sbjct: 345  AKQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEG 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD VI YV  +YG E VAQIIT+G++ A+A LRDVGR L +PY  VD++ KL+P +    
Sbjct: 405  RDRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELG-- 462

Query: 487  VSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+L+   +       R A D  V  L++++ KLEGL R+A  HA G+VI    L+  VP+
Sbjct: 463  VTLEKALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPL 522

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK----VDLSL 600
            Y +  SD  VTQF+   +E  GL+KFDFLGL+TLT++  ++  + A+R ++    +D+  
Sbjct: 523  YSEPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKRKIQNETELDIGT 582

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD +TY LL +  T  +FQLES GM++ +  +QPD   DI+ALV+L+RPGP+ + +V
Sbjct: 583  IPLDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMV 642

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   K+G++ +  +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL  ADVLR AMG
Sbjct: 643  ETFIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMG 702

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM KQ+  F+ G    G+ + +A  IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW
Sbjct: 703  KKKPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAW 762

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYY 837
            +K HYP EF+AA ++ +MDN +K+  F  + R  N++++PP++N     F V    +I Y
Sbjct: 763  LKAHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVY 822

Query: 838  SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIKGVG     +I+    A+  F  L +FCSRVD +K+NRR +E L+ +GA+D FG 
Sbjct: 823  GLGAIKGVGEAAVMNIVACREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGV 882

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENE 955
            SR  L +SL    + A+   ++      ++F  E KG   D   + ++   N S R   E
Sbjct: 883  SRASLFESLTKAFQAAEQRNRDMILGQHDLFGEEVKGIDEDYTEVPEW---NDSDRLRGE 939

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LG Y SGHPL      ++ +G       ++    N++ +A M++  +   TR G R+
Sbjct: 940  KETLGLYVSGHPLQACIKEMKAVGAVPINH-LSLSEKNSVVVAGMMMGMRTITTRSGKRM 998

Query: 1016 GWVTFSEPAKEYEANFF 1032
              ++  +   + +   F
Sbjct: 999  AILSLEDQTGKIDVTLF 1015


>gi|170021463|ref|YP_001726417.1| DNA polymerase III subunit alpha [Escherichia coli ATCC 8739]
 gi|169756391|gb|ACA79090.1| DNA polymerase III, alpha subunit [Escherichia coli ATCC 8739]
          Length = 1160

 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD++I +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQLIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|301156858|emb|CBW16334.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Typhimurium str. SL1344]
 gi|323128551|gb|ADX15981.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. 4/74]
          Length = 1160

 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114  PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQTDMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|82775574|ref|YP_401921.1| DNA polymerase III subunit alpha [Shigella dysenteriae Sd197]
 gi|81239722|gb|ABB60432.1| DNA polymerase III, alpha subunit [Shigella dysenteriae Sd197]
          Length = 1160

 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  +M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEDMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVSLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|262404579|ref|ZP_06081134.1| DNA polymerase III alpha subunit [Vibrio sp. RC586]
 gi|262349611|gb|EEY98749.1| DNA polymerase III alpha subunit [Vibrio sp. RC586]
          Length = 1159

 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1050 (41%), Positives = 632/1050 (60%), Gaps = 49/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G++
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG             T Q +     +  + +L     GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGADF----------TLQSEEFGDELTKLTVLAKNNIGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  +WL E   EGLI+L+GG SG I RA    + Q  EK L  ++  F D  Y+ L R
Sbjct: 114  PVLDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLELVR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   ++LA  +ELP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 173  TGRADE--ESYLHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +P  YL++ +EM  +F+D+PEALEN+VEIA+RC+  +++    LP F   E   I 
Sbjct: 231  PKNYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNF-PTEGMAI- 288

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 289  ---EDFLVMKSREGLEERLEFLFPNPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +    IA+ +  +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA + D  F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944
            AGALD  G  R  ++ S+D+  + A    +       ++F    G  +D   ++  +   
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQ 940

Query: 945  VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            V      VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V+
Sbjct: 941  VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1000

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG +T  + +   E   +
Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|320173335|gb|EFW48538.1| DNA polymerase III alpha subunit [Shigella dysenteriae CDC 74-1112]
          Length = 1160

 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ +KA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMASKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|16763621|ref|NP_459236.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. LT2]
 gi|167990118|ref|ZP_02571218.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|20141337|sp|P14567|DPO3A_SALTY RecName: Full=DNA polymerase III subunit alpha
 gi|16418736|gb|AAL19195.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Typhimurium str. LT2]
 gi|205331368|gb|EDZ18132.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261245463|emb|CBG23253.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Typhimurium str. D23580]
 gi|267991922|gb|ACY86807.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. 14028S]
 gi|312911201|dbj|BAJ35175.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. T000240]
          Length = 1160

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114  PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQTDMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|187733784|ref|YP_001878986.1| DNA polymerase III subunit alpha [Shigella boydii CDC 3083-94]
 gi|187430776|gb|ACD10050.1| DNA polymerase III, alpha subunit [Shigella boydii CDC 3083-94]
          Length = 1160

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1055 (42%), Positives = 637/1055 (60%), Gaps = 58/1055 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S +  + +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVGECVAFYEEHFPDRYFLELIR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 173  TGRLDE--ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            +GA D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E 
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQ 936

Query: 948  S---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRL 997
            S          V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  
Sbjct: 937  SYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITA 996

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 997  AGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|289825701|ref|ZP_06544869.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. E98-3139]
          Length = 1063

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114  PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|194445238|ref|YP_002039471.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. SL254]
 gi|194403901|gb|ACF64123.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Newport str. SL254]
          Length = 1160

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114  PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|53804349|ref|YP_113748.1| DNA polymerase III subunit alpha [Methylococcus capsulatus str. Bath]
 gi|53758110|gb|AAU92401.1| DNA polymerase III, alpha subunit [Methylococcus capsulatus str.
            Bath]
          Length = 1165

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1041 (42%), Positives = 636/1041 (61%), Gaps = 47/1041 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL++H+ YSL++G + +  ++ +++    PA+A+TD  NLF+ ++F + A  AGI+
Sbjct: 3    PKFVHLRIHTEYSLVDGIVRIKPLVKRLSEFGMPAVAVTDQCNLFALVKFYKAAMGAGIK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G   D+ +Q+   +++  +        + LLV   EGY  L EL+SR Y  +Q +  
Sbjct: 63   PIAGA--DVWLQNPQDVSSPHR--------LTLLVQNQEGYLALTELISRSYQENQHQGV 112

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   WL +    GLI L+GG  G I  A    S   A +    +  +F DR Y+ + R
Sbjct: 113  PMLMPEWLADCNA-GLIALSGGRDGAIGHALLAGSGAEATRLAEYWGGMFRDRFYLEVCR 171

Query: 189  --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  +RY ++  V+LA   +LP+VATN+  FLS +++EAH+  + +    V+    RP
Sbjct: 172  TGRANEERYIDA-AVELAACLDLPVVATNDVRFLSAKEFEAHEARVCIHQGRVLDDPRRP 230

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---IEKECDD 302
            R  +   YL++  EM+S+F+DLPEALEN+VEIARRC+  L +    LP F        DD
Sbjct: 231  RDYSEQQYLRSEEEMLSLFADLPEALENSVEIARRCNLGLTLGKNFLPDFPVPAGMTPDD 290

Query: 303  IQKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+  + L+ +    L VR   GA       Q Y  RL+ EL+VI  M F GYFLIVA
Sbjct: 291  FFSEQSRQGLKER----LAVRPPSGAGTLEERTQRYWCRLELELSVIREMGFPGYFLIVA 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQWAK   IPVGPGRGSGAGS+ AYAL ITD+DP+ F LLFERFLNP+R+SMPDFD+D
Sbjct: 347  DFIQWAKSQGIPVGPGRGSGAGSLVAYALKITDLDPIEFDLLFERFLNPERVSMPDFDVD 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RRDEVI YV  KYG ++V+QIIT+GS+ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 407  FCMERRDEVIDYVARKYGRDKVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDRIAKLIPF 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +S +A+ D    R++   D  V  LL+++Q LEG+ R+   HA G+VI    L  
Sbjct: 467  ELGITLS-KALEDSEELRKSYEEDEEVRALLDLAQSLEGITRNPGKHAGGVVIAPSRLID 525

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVK----V 596
              P+Y +      VTQF+   +E  GL+KFDFLGL+TLT++  +L D  A+R       V
Sbjct: 526  FSPLYCEPGGGNLVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWALADINAKRRAAGEEPV 585

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +TY LL    T  +FQLES GM+  ++ ++PDC EDIIALV+L+RPGP+ 
Sbjct: 586  DINRIPLDDPKTYELLGRCATTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQ 645

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +V  Y N K+G+ K    HP+++P+LK T GVI+YQEQVMQIA+ ++GY+L  AD+LR
Sbjct: 646  SGMVDDYINVKHGRTKAEYPHPVLEPILKPTNGVILYQEQVMQIARDMAGYTLGGADLLR 705

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ+E FI+GA++ GI  +I+ +IF+L+ KFA YGFNKSH+AAYA++SY
Sbjct: 706  RAMGKKKPEEMAKQREIFIAGATRQGIDPSISSHIFDLMEKFAGYGFNKSHSAAYALVSY 765

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDN 833
            QTAW+K HYP EF++A ++ +MDN +K+     + R+  + I+PP +N     F V G  
Sbjct: 766  QTAWLKAHYPAEFMSAVLSADMDNTDKVVVLIDECREMKLSILPPDINLSEYRFTVRGRR 825

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L A+KGVG T    I+ E   + PF  L D C R+D +K NRRVLE+++ AG  D
Sbjct: 826  EILYGLGAVKGVGQTAIDDILQERKNNGPFTDLLDLCRRIDLRKANRRVLEAMIRAGVFD 885

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSVENS 948
            CF  +R  L  +L ++ K A+          +++F    A      S  +   +      
Sbjct: 886  CFDRNRAALFAALPDVVKAAEQQGAMSAAGQDDLFGGFTAESPAASSAGLVATEIEPWAE 945

Query: 949  SVRFENEQRVLGFYFSGHPL-----DVYKPILRKMG-IKGYEESVATIRGNN-IRLAAMV 1001
            + R   E+  LG Y +GHP+     ++ + +  ++G + G  E     RG+  + +A ++
Sbjct: 946  AERLAQEKATLGLYLTGHPITPHERELEQIVTSRLGPLMGEGEGG---RGDTRVVVAGLI 1002

Query: 1002 VSKQQKKTRKGSRIGWVTFSE 1022
            V  + + TR G ++G+++  +
Sbjct: 1003 VDIRTRLTRSGQKMGFLSLDD 1023


>gi|170768453|ref|ZP_02902906.1| DNA polymerase III, alpha subunit [Escherichia albertii TW07627]
 gi|170122557|gb|EDS91488.1| DNA polymerase III, alpha subunit [Escherichia albertii TW07627]
          Length = 1160

 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++          Q +     +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNV----------QSEPLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y  RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLIKRAKEGLEERLAFLFPDEEERLKRRPEYDVRLDTELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPDQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|215485345|ref|YP_002327776.1| DNA polymerase III subunit alpha [Escherichia coli O127:H6 str.
            E2348/69]
 gi|215263417|emb|CAS07737.1| DNA polymerase III, alpha subunit [Escherichia coli O127:H6 str.
            E2348/69]
          Length = 1160

 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1053 (41%), Positives = 634/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLVFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|200387887|ref|ZP_03214499.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Virchow str. SL491]
 gi|199604985|gb|EDZ03530.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Virchow str. SL491]
          Length = 1160

 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114  PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|168823099|ref|ZP_02835099.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Weltevreden str. HI_N05-537]
 gi|205340602|gb|EDZ27366.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Weltevreden str. HI_N05-537]
 gi|320084485|emb|CBY94278.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica
            serovar Weltevreden str. 2007-60-3289-1]
          Length = 1160

 Score =  793 bits (2049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+++GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114  PIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|260853394|ref|YP_003227285.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O26:H11 str.
            11368]
 gi|257752043|dbj|BAI23545.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O26:H11 str.
            11368]
          Length = 1160

 Score =  793 bits (2049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1053 (41%), Positives = 635/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +  + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNRALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|167553355|ref|ZP_02347104.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Saintpaul str. SARA29]
 gi|198243100|ref|YP_002214192.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Dublin str. CT_02021853]
 gi|197937616|gb|ACH74949.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Dublin str. CT_02021853]
 gi|205322170|gb|EDZ10009.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Saintpaul str. SARA29]
          Length = 1160

 Score =  793 bits (2049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114  PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|213865541|ref|ZP_03387660.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. M223]
          Length = 1093

 Score =  793 bits (2049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114  PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|16759221|ref|NP_454838.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. CT18]
 gi|29140771|ref|NP_804113.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. Ty2]
 gi|213163684|ref|ZP_03349394.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. E00-7866]
 gi|213425957|ref|ZP_03358707.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. E02-1180]
 gi|213648459|ref|ZP_03378512.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. J185]
 gi|25288562|pir||AI0530 DNA polymerase III, alpha chain [imported] - Salmonella enterica
            subsp. enterica serovar Typhi (strain CT18)
 gi|16501512|emb|CAD08689.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Typhi]
 gi|29136395|gb|AAO67962.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Typhi str. Ty2]
          Length = 1160

 Score =  793 bits (2049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114  PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|168244999|ref|ZP_02669931.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Heidelberg str. SL486]
 gi|194449006|ref|YP_002044221.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. SL476]
 gi|194407310|gb|ACF67529.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Heidelberg str. SL476]
 gi|205336213|gb|EDZ22977.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Heidelberg str. SL486]
          Length = 1160

 Score =  793 bits (2048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+++GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114  PIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|146310386|ref|YP_001175460.1| DNA polymerase III subunit alpha [Enterobacter sp. 638]
 gi|145317262|gb|ABP59409.1| DNA polymerase III, alpha subunit [Enterobacter sp. 638]
          Length = 1160

 Score =  793 bits (2047), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1052 (42%), Positives = 625/1052 (59%), Gaps = 52/1052 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F   A  AG++
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAAHGAGLK 63

Query: 69   PIIGCQLDIDMQDNL---KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PIIG   D  +Q  L   +MT            I +L     GYQ L  L+SR Y    G
Sbjct: 64   PIIGA--DFHVQSELLGDEMTQ-----------ISVLAMNNTGYQNLTLLISRAYQRGYG 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   WL E+  EGL++++GG  G + ++    ++ + E+ +  +++ F DR Y+ 
Sbjct: 111  AAGPWIDRDWLAEL-NEGLLLISGGRMGDVGKSLIRGNNVLVEQCVAFYEEHFPDRFYLE 169

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R  R  +       V LA    LP+VATN+  F++ ED++AH++ +A+     +    
Sbjct: 170  LIRTGRPDEENYLHAAVALAEQRGLPVVATNDVRFINAEDFDAHEIRVAIHDGFTLDDPK 229

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RPR  +   Y+++  EM  +F+D+PEALEN+VEIARRC+  +++    LP+F   E    
Sbjct: 230  RPRNYSTQQYMRSEDEMCELFADIPEALENSVEIARRCNVTVRLGEYFLPQFPTGEM--- 286

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                E+ L  K+  GLE RL         +      Y +RLD EL VI +M F GYFLIV
Sbjct: 287  --STEDFLVLKSKEGLEDRLEFLFPDEAERNEKRPPYDERLDIELQVINQMGFPGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 345  MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P
Sbjct: 405  DFCMEKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 465  PDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     
Sbjct: 524  DFAPLYCDESGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRRAKQGLEP 583

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+
Sbjct: 584  IDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643

Query: 656  DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ LSGY+L 
Sbjct: 644  QSGMVDNFIDRKHGREAISYPDVQWQHDCLKPVLEPTYGIILYQEQVMQIAQELSGYTLG 703

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 704  GADMLRRAMGKKKPEEMAKQRGTFEDGAKKNGIDGELAIKIFDLVEKFAGYGFNKSHSAA 763

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N     F
Sbjct: 764  YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINAGMYHF 823

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886
             V D+  I Y + AIKGVG      I+EA  +   F  L D C+R D+KKLNRRVLE L+
Sbjct: 824  HVNDDGEIVYGIGAIKGVGEGPIEAILEARNNGGYFRELFDLCARTDTKKLNRRVLEKLI 883

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             +GA D  G  R  L+ SL    K A    K       ++F    G  +D+    + S  
Sbjct: 884  MSGAFDRLGPHRAALMNSLGEALKAADQHAKAEAIGQADMF----GVLADEPEQIEQSYA 939

Query: 947  NSS-----VRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAM 1000
            N          E E+  LG Y +GHP++ Y K I R +G    ++   T RG     A +
Sbjct: 940  NCQPWPEHTVLEGERETLGLYLTGHPINQYLKEIERYVGGNRLKDMHPTERGKMTTAAGL 999

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V++ +   T++G+RIG  T  + +   E   F
Sbjct: 1000 VIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|62178801|ref|YP_215218.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Choleraesuis str. SC-B67]
 gi|62126434|gb|AAX64137.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Choleraesuis str. SC-B67]
 gi|322713255|gb|EFZ04826.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Choleraesuis str. A50]
          Length = 1160

 Score =  793 bits (2047), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114  PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|207855749|ref|YP_002242400.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. P125109]
 gi|206707552|emb|CAR31826.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Enteritidis str. P125109]
          Length = 1160

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114  PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +FSD+PE+LENTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFSDIPESLENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|320180909|gb|EFW55831.1| DNA polymerase III alpha subunit [Shigella boydii ATCC 9905]
          Length = 1160

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1053 (41%), Positives = 634/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L     GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAVNNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHSVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL N  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGNALKAAGQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|302343800|ref|YP_003808329.1| DNA polymerase III, subunit alpha [Desulfarculus baarsii DSM 2075]
 gi|301640413|gb|ADK85735.1| DNA polymerase III, alpha subunit [Desulfarculus baarsii DSM 2075]
          Length = 1152

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1041 (41%), Positives = 648/1041 (62%), Gaps = 33/1041 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +PSFVHL  H++YSLL+GA+ L  ++ + A     A+A+TD  N+F AL F Q+A  AG+
Sbjct: 2    TPSFVHLHTHTAYSLLDGAIRLPELIKRTAELGMNAVAVTDHGNMFGALNFFQQAKKAGL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC++ +   D  +   + +    T   +VLL    EGYQ L+ LVS  +  +    
Sbjct: 62   KPIIGCEVYVAPGD--RRDKEHRPGHETAFHLVLLCKNLEGYQNLVRLVSAGFT-EGFYY 118

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNL 186
              RI +  L++    GLI L+    G +       +   A        +  G+   ++ L
Sbjct: 119  KPRIDMELLRQ-HNGGLIALSACLGGRVPHYLLRGNIDQALAAAEDMAQTMGEGNFFIEL 177

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++ +    + ++A    L LV TN+  FL  +D+EAHD+L+ +     ++  +R
Sbjct: 178  QDHGLVEQKQVNPGLREIAQRLGLGLVVTNDCHFLRRQDHEAHDILLCIQTGKTIADAER 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              ++P+ Y K+  EM  +F D PEA+ NT++IA RC   + +     P++   E     +
Sbjct: 238  MTMSPELYFKSPEEMALLFPDCPEAMANTMDIAARCDLDIPLGQLRFPQYPLPE----GQ 293

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKG--YHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              E++L   A  GLE RLA+   A+G  +    Y++RL++E++V+ +M F+GYFL+V+DF
Sbjct: 294  SAEDQLTRMARRGLERRLAE-MDARGLKFDRDFYKKRLEYEIDVLLQMGFAGYFLVVSDF 352

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I WAK   IPVGPGRGS AGS+ AY++ ITD+DP+R+ L+FERFLN +R SMPD D+DFC
Sbjct: 353  IVWAKSQGIPVGPGRGSAAGSLVAYSMRITDLDPIRYGLIFERFLNIERKSMPDIDVDFC 412

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR EVI+YV  +YG + VAQIITFGS+ A+A +RDVGRA+ +P+  VD++ KL+P   
Sbjct: 413  YNRRPEVIQYVTERYGSDHVAQIITFGSMLARAVIRDVGRAMNVPFGDVDQIAKLVPT-- 470

Query: 484  AHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                +L    D +  +E RLA     +P V +L+ I++ LEGL RHASTHAAG+VIGD P
Sbjct: 471  ----ALGMTLDKALEQEPRLAQRIKDEPQVAKLVRIAKSLEGLPRHASTHAAGVVIGDVP 526

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L ++VP+YR  + +  VTQF+MK +EKAGLIKFDFLGL+TLT++  ++  + Q R    D
Sbjct: 527  LDRVVPLYRGSQGEC-VTQFDMKCVEKAGLIKFDFLGLRTLTVIDVAVKMIRQGRDPSFD 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  I  DD  +Y LL+   T G+FQLESSGM++ L  M+P+  ED+IALV+LYRPGP+++
Sbjct: 586  IDAIDMDDKASYELLSRGDTTGVFQLESSGMKELLTKMRPEVFEDVIALVALYRPGPLES 645

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  +   K+G +K+    P ++P+LKET GVI+YQEQV +IA++L+GYSL E D+LRR
Sbjct: 646  GMVDDFVACKHGAKKVSYPLPQLEPVLKETYGVIVYQEQVQEIARILAGYSLGEGDILRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK+ E M  Q+ERF+SGA  NG+S+  A  IF+L+ KFA YGFNKSH+AAY +I+YQ
Sbjct: 706  AMGKKVPEVMAAQRERFVSGAKANGVSEKKAGEIFDLMEKFAGYGFNKSHSAAYGLIAYQ 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K H+P EF+AA +T E+ N +KI     + R  N++++PP +N    +F V D+ I
Sbjct: 766  TAFLKAHFPHEFMAALLTSEVSNTDKIMLHIAECRDQNLKVLPPDINHSGREFTVDDDAI 825

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             + LAA+K VG      I+EA  +KPF+ + DFC RV+  K+NRRV+ESL+  GA D  G
Sbjct: 826  RFGLAAVKNVGEGAVDAIIEARQEKPFEDIFDFCERVNLAKVNRRVIESLIKCGAFDSLG 885

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENI-FAHEKGTFSDKITLEKFS--VENSSVRF 952
              R Q + +LD+  +  Q + ++R     N+  A  +   S + T+      +E  ++ +
Sbjct: 886  AHRAQNMAALDDAMEQGQKLGRDRDGGQINMFAAFSEAAASARPTMPDVPPWLEADALTY 945

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            E E   LGFY +GHPL  +   ++++G+       A   G ++RLA +    ++K T+KG
Sbjct: 946  EKE--ALGFYITGHPLGRFAEDIKRLGVLDSVTVQAAADGMSVRLAGLATEIKEKITKKG 1003

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
             R+ +V   +     E   FP
Sbjct: 1004 DRMAFVRLEDLKGSLELVVFP 1024


>gi|24111619|ref|NP_706129.1| DNA polymerase III subunit alpha [Shigella flexneri 2a str. 301]
 gi|30061741|ref|NP_835912.1| DNA polymerase III subunit alpha [Shigella flexneri 2a str. 2457T]
 gi|24050388|gb|AAN41836.1| DNA polymerase III, alpha subunit [Shigella flexneri 2a str. 301]
 gi|30039983|gb|AAP15717.1| DNA polymerase III, alpha subunit [Shigella flexneri 2a str. 2457T]
 gi|281599539|gb|ADA72523.1| DNA polymerase III, alpha subunit [Shigella flexneri 2002017]
          Length = 1160

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1053 (41%), Positives = 635/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLALLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKSVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|238911297|ref|ZP_04655134.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Tennessee str. CDC07-0191]
          Length = 1160

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+++GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114  PIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEALENTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|168230540|ref|ZP_02655598.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CDC 191]
 gi|194468770|ref|ZP_03074754.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CVM29188]
 gi|194455134|gb|EDX43973.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CVM29188]
 gi|205335161|gb|EDZ21925.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CDC 191]
          Length = 1160

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1053 (41%), Positives = 631/1053 (59%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+++GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114  PIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL    K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGAALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|77164364|ref|YP_342889.1| DNA polymerase III, alpha subunit [Nitrosococcus oceani ATCC 19707]
 gi|254433438|ref|ZP_05046946.1| DNA polymerase III, alpha subunit subfamily, putative [Nitrosococcus
            oceani AFC27]
 gi|76882678|gb|ABA57359.1| DNA polymerase III, alpha subunit [Nitrosococcus oceani ATCC 19707]
 gi|207089771|gb|EDZ67042.1| DNA polymerase III, alpha subunit subfamily, putative [Nitrosococcus
            oceani AFC27]
          Length = 1158

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1051 (42%), Positives = 633/1051 (60%), Gaps = 48/1051 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +PSFVHL++H+ YSL++  + +  ++   +    PA+A+TD +N+F+ ++F + A AAG+
Sbjct: 2    APSFVHLRLHTEYSLVDSLVRIRPLIQATSEAGMPAVAVTDQSNVFAMIKFYRAAQAAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG  + +           G      V    LL     GY+ L  L+SR Y   Q + 
Sbjct: 62   KPIIGADIFL----------VGSGEHSRVSRFTLLCQNELGYRNLSSLLSRAYREGQYQG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+   WLQ +  +GLI+L+GG  G + +A    +   A K L  ++ LF  R Y+ L 
Sbjct: 112  IPRLQWDWLQNL-NDGLIILSGGREGDVGQALLAGNDIQAGKLLERWQALFPGRYYLELH 170

Query: 188  R--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R    G + Y  + +       + P+VATN+  FL  +D+EAH+  + +     ++   R
Sbjct: 171  RTGREGEEDYLHAAIALAL-ARDTPVVATNDVRFLRPQDFEAHEARVCIHEGRTLNDPRR 229

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +   YL+  SEM  +F+DLPEALENTVEIARRC+  L +    LP F   E   I 
Sbjct: 230  PRHYSEQQYLRTPSEMTELFADLPEALENTVEIARRCNLELTLGKHYLPNFPVPEDLSI- 288

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVA 361
               E  L  +A  GLE RL +    +     +   Y  RL  EL VI +M F GYFLIVA
Sbjct: 289  ---EAFLAAEARRGLEQRLVKLYPREAKRETEQPAYEARLAEELAVINQMGFPGYFLIVA 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAKKN IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+S+PDFDID
Sbjct: 346  DFIRWAKKNGIPVGPGRGSGAGSLVAYALQITDLDPLAFDLLFERFLNPERVSLPDFDID 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RRD VI YV + YG + V+QIIT+GS+ AKA +RDVGR L  PY  VD++ KLIP 
Sbjct: 406  FCMERRDRVIDYVSHYYGRDHVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDQIAKLIPF 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            D    +  +A+A+    R     +  V  L+++++KLEGL R+A  HA G+VI  + L++
Sbjct: 466  DLKMTLD-KALAESEGLRSRYEGEEEVRFLIDLARKLEGLIRNAGKHAGGVVIAPKKLTE 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRG-VKV 596
             VP Y +  +   VTQF+   IE  GL+KFDFLGL+TLT+L  +L  +     Q+G   +
Sbjct: 525  YVPYYCEQGASGVVTQFDKDDIETIGLVKFDFLGLRTLTILDWALQAINRQRTQQGEALL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL+L+P DD ++Y LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  DLALLPMDDPKSYALLKRCATTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +V  Y NRK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+GY+L EAD+LR
Sbjct: 645  SGMVDDYINRKHGRAQVNYPHPALEPILKPTYGVIVYQEQVMQIAQVLAGYTLGEADLLR 704

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM +Q+  F +GA    + +  A  IF+L+ KFA+YGFNKSH+AAYAVI+Y
Sbjct: 705  RAMGKKKPEEMAEQRAIFTAGAKAREVDEKTATAIFDLMEKFAEYGFNKSHSAAYAVIAY 764

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDN 833
            QTA++K HYP  ++AA ++ +MDN EK+K F ++    N+ ++PP VN     F   G+ 
Sbjct: 765  QTAYLKAHYPASYMAAVLSADMDNTEKVKAFVEECWAMNLDLLPPDVNASNYSFSAQGET 824

Query: 834  RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L AIKGVG      I++      P+  L +FC R+D +K++RRVLE+L+ AGALD
Sbjct: 825  AIRYGLGAIKGVGAAALEGIIKVRERHGPYQDLFEFCRRIDLRKVSRRVLEALIRAGALD 884

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDKITLEKFSVENS 948
              G  R  L  SL+     A+   +N +    ++F      E+G   + + + ++  E  
Sbjct: 885  SLGVERATLEASLETALALAEQHCRNASLGQNDLFGLDLVSEEGEAGNYVEVREWDKEQ- 943

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-------IRLAAMV 1001
              R   E+  LG Y SGHP+D YK  L+++      E +   R NN       I +A +V
Sbjct: 944  --RLALEKETLGLYLSGHPIDCYKQELKQIAPCRIVELID--RANNRQSRNQQIVIAGLV 999

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             S +  K R+G R  +VT  + +   E   F
Sbjct: 1000 GSVRTNKARQGGRNAFVTLEDGSARLEIKAF 1030


>gi|168264639|ref|ZP_02686612.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Hadar str. RI_05P066]
 gi|168464204|ref|ZP_02698107.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Newport str. SL317]
 gi|205351568|ref|YP_002225369.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Gallinarum str. 287/91]
 gi|195632694|gb|EDX51148.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Newport str. SL317]
 gi|205271349|emb|CAR36142.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Gallinarum str. 287/91]
 gi|205346919|gb|EDZ33550.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Hadar str. RI_05P066]
 gi|326626595|gb|EGE32938.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Gallinarum str. 9]
          Length = 1160

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+++GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114  PIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|197251652|ref|YP_002145236.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Agona str. SL483]
 gi|197215355|gb|ACH52752.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Agona str. SL483]
          Length = 1160

 Score =  791 bits (2044), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F +R ++ L R
Sbjct: 114  PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPERYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|56412504|ref|YP_149579.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Paratyphi A str. ATCC 9150]
 gi|197361439|ref|YP_002141075.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Paratyphi A str. AKU_12601]
 gi|56126761|gb|AAV76267.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Paratyphi A str. ATCC 9150]
 gi|197092915|emb|CAR58344.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Paratyphi A str. AKU_12601]
          Length = 1160

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  +GLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114  PIIERDWLVEL-KDGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A +    F  L D C+R D+K+LNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKRLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|304396659|ref|ZP_07378540.1| DNA polymerase III, alpha subunit [Pantoea sp. aB]
 gi|304356168|gb|EFM20534.1| DNA polymerase III, alpha subunit [Pantoea sp. aB]
          Length = 1160

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1058 (41%), Positives = 631/1058 (59%), Gaps = 64/1058 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G      ++ K AA   PAIAITD  NL   ++F   A +AGI+
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHSAGIK 63

Query: 69   PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            P+IG   ++    M D L               + +L S+  GYQ L  L+SR Y    G
Sbjct: 64   PVIGADFNVASELMGDELT-------------QLTVLASSNTGYQNLTLLISRAYQRGYG 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   WL E+  EGLI+L+GG  G + R+    ++ +  + L  +++ F DR Y+ 
Sbjct: 111  VDGPIIDRDWLIEL-QEGLILLSGGRRGDVGRSLLRGNNALVSQCLSFYQQHFPDRYYLE 169

Query: 186  LQRHRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            L R    D   ES +   V+LA    +P+VATN   F++ ED++AH++ +A+     +  
Sbjct: 170  LIRTGRQDE--ESYLHAAVELAIAEGIPVVATNEVCFINAEDFDAHEIRVAIHDGYTLDD 227

Query: 243  KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RPR  +P  Y+++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP+F   +  
Sbjct: 228  PKRPRNYSPQQYMRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM- 286

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L  K+  GLE RLA        +     +Y +RL+ EL VI +M F GYFL
Sbjct: 287  ----TTEDYLVVKSREGLEERLAFLFPDEAERAEKRPEYDERLEIELTVINQMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC ++RD+VI +V + YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 403  DVDFCMEKRDQVIEHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   +    IA + +      AD  V  L+++++KLEG+ R+A  HA G+VI    
Sbjct: 463  IPPDPGMTLEKAFIA-EPQLPAMYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTK 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595
            ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K   
Sbjct: 522  ITDFAPLYCDEHGQFPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGL 581

Query: 596  --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              +D++ IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPG
Sbjct: 582  EPIDIASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPG 641

Query: 654  PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+
Sbjct: 642  PLQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYT 701

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA   GI   +++ IF+L+ KFA YGFNKSH+
Sbjct: 702  LGGADMLRRAMGKKKPEEMAKQRSIFRDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHS 761

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+   
Sbjct: 762  AAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLY 821

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884
             F V D   I Y + AIKGVG      I++A  +   F  L D C+R D+KK+NRRV+E 
Sbjct: 822  PFHVNDAGEIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEK 881

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ +GA D  G  R  L+ SL +  K A    K       ++F    G  ++    E   
Sbjct: 882  LIMSGAFDRLGPHRAALMSSLSDALKAADQHAKAEAIGQADMF----GVLAE----EPEQ 933

Query: 945  VENS---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNN 994
            VE S          V+ + E+  LG Y +GHP++ Y K I R +G    ++   T RG  
Sbjct: 934  VEKSYASVTPWPEQVQLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKI 993

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               A +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 994  TVAAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|117618855|ref|YP_855729.1| DNA polymerase III, alpha subunit [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
 gi|117560262|gb|ABK37210.1| DNA polymerase III, alpha subunit [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
          Length = 1159

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1048 (41%), Positives = 625/1048 (59%), Gaps = 45/1048 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +N I+   AA+  PA+A+TD  N+   + F   A   G++
Sbjct: 4    PRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHGKGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G    +   D L     G   F     + LL    +GYQ +  L+SR Y     +  
Sbjct: 64   PIVGADFWV-QSDEL-----GDEQF----RLTLLAMDNDGYQNITLLISRGYQRGHVQGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E   +G+I+L+GG  G + +     + Q+ E+ L  ++  F D  Y+ L R
Sbjct: 114  PVIDKAWLAE-HAKGVIVLSGGREGDVGKFLLKGNRQMTEQCLAFYQTHFPDAYYLELLR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V +A    LP+VATN  +FL+ +D++AH++ +A+     +  K RPR
Sbjct: 173  TGRPDEEVYLHMAVAIATEFALPVVATNEVVFLTADDFDAHEIRVAIHDGYTLMDKRRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL+++ EM  +F+D+PEALENTVEIA+RC+  +++    LP F   +       
Sbjct: 233  RYSPQQYLRSQEEMAELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVMKSKEGLEERLEFLFPDPAVRAERRPEYDERLDIELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRRDEVI +V   YG E V+QIITFGS+ AKA +RDVGR L   Y  VDR+ KLIP DP
Sbjct: 408  MDRRDEVIDHVSEMYGREAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E    D  V  L++++++LEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     VD+
Sbjct: 527  PLYCDDEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPIDDKRSFDLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N   RK+GKE I        H  + P+L+ T G+I+YQEQVMQIAQ L+GY+L  AD
Sbjct: 647  MVDNFIERKHGKEAISYPDEKWQHESLQPILEPTYGIILYQEQVMQIAQTLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRAGFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTH+P EF+AA MT +MDN +KI     + ++  + ++PP VNT    F V 
Sbjct: 767  VSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVTLVDECQRMGLTVIPPDVNTGRYRFSVN 826

Query: 832  -DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  I Y + A+KGVG      I+EA   D PF  L DFC+RVD KKLN+RV+E L+ +G
Sbjct: 827  EDGHIVYGIGAVKGVGEGPIDAILEARDRDGPFRDLFDFCNRVDIKKLNKRVMEKLILSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947
            A+D  G  R  L+ +L+   + A+   K +     ++F    G  +++I   K +  N  
Sbjct: 887  AMDRLGPHRAALMATLEEAMRAAEQHAKAQAVGQVDMF----GVLTEEIDDVKKAFANVP 942

Query: 948  ---SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   LR+       +   T R      A +V++ 
Sbjct: 943  HWPDKVWLEGERETLGLYLTGHPINQYSGELRRYTSGRLCDLHPTSRDTVTTAAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+++G  T  + +   +   F
Sbjct: 1003 RSMVTKRGNKMGIFTLDDRSGRLDVTLF 1030


>gi|311280847|ref|YP_003943078.1| DNA polymerase III, alpha subunit [Enterobacter cloacae SCF1]
 gi|308750042|gb|ADO49794.1| DNA polymerase III, alpha subunit [Enterobacter cloacae SCF1]
          Length = 1160

 Score =  790 bits (2040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1053 (41%), Positives = 629/1053 (59%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG++
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTGHGAGLK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D  +Q++L      +        + +L +   GYQ L  L+SR Y    G Q 
Sbjct: 64   PIVGA--DFHVQNDLLGDEMSQ--------LTVLAANNTGYQNLTLLISRAYQRGYGAQG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + ++    ++ + E+    +++ F DR ++ L R
Sbjct: 114  PWIDRDWLVEL-NEGLILLSGGRMGDVGKSLLRGNAALVEQCAAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173  TGRADEESYLHAAVKLAEERGLPVVATNDVRFIDAGDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   Y+++  EM  +F+D+PEALEN+VEIA+RC+  +++    LP+F   E       
Sbjct: 233  NYSSQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGEM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +      Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVVKSKEGLEERLEFLFPDEAERKEKRPPYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIDHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     +D+
Sbjct: 527  PLYCDESGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRRAKQGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRGTFEEGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA  +   F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP+  Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPITQYLKEIERYVGGVRLKDMHPTDRGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|168235011|ref|ZP_02660069.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Schwarzengrund str. SL480]
 gi|194737870|ref|YP_002113254.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Schwarzengrund str. CVM19633]
 gi|194713372|gb|ACF92593.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Schwarzengrund str. CVM19633]
 gi|197291671|gb|EDY31021.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Schwarzengrund str. SL480]
 gi|322616055|gb|EFY12972.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 315996572]
 gi|322620838|gb|EFY17698.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 495297-1]
 gi|322623811|gb|EFY20648.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 495297-3]
 gi|322627259|gb|EFY24050.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 495297-4]
 gi|322630566|gb|EFY27330.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 515920-1]
 gi|322638216|gb|EFY34917.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 515920-2]
 gi|322640701|gb|EFY37352.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 531954]
 gi|322645515|gb|EFY42042.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. NC_MB110209-0054]
 gi|322657142|gb|EFY53425.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. CASC_09SCPH15965]
 gi|322657512|gb|EFY53784.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 19N]
 gi|322663832|gb|EFY60032.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 81038-01]
 gi|322666665|gb|EFY62843.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MD_MDA09249507]
 gi|322672177|gb|EFY68289.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 414877]
 gi|322676512|gb|EFY72583.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 366867]
 gi|322679396|gb|EFY75441.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 413180]
 gi|322686277|gb|EFY82261.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 446600]
 gi|323193457|gb|EFZ78665.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 609458-1]
 gi|323197521|gb|EFZ82656.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 556150-1]
 gi|323201210|gb|EFZ86279.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 609460]
 gi|323209605|gb|EFZ94538.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 507440-20]
 gi|323212143|gb|EFZ96967.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 556152]
 gi|323216448|gb|EGA01174.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB101509-0077]
 gi|323223362|gb|EGA07697.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB102109-0047]
 gi|323225923|gb|EGA10143.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB110209-0055]
 gi|323228536|gb|EGA12665.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB111609-0052]
 gi|323236851|gb|EGA20927.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 2009083312]
 gi|323239649|gb|EGA23696.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 2009085258]
 gi|323242304|gb|EGA26333.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 315731156]
 gi|323249966|gb|EGA33862.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2009159199]
 gi|323252396|gb|EGA36247.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008282]
 gi|323255679|gb|EGA39432.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008283]
 gi|323262884|gb|EGA46434.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008284]
 gi|323265370|gb|EGA48866.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008285]
 gi|323271843|gb|EGA55261.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008287]
          Length = 1160

 Score =  790 bits (2040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114  PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEALENTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSIDEMCELFADIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|204926920|ref|ZP_03218122.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Javiana str. GA_MM04042433]
 gi|204323585|gb|EDZ08780.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Javiana str. GA_MM04042433]
          Length = 1160

 Score =  790 bits (2040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114  PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEETYLHAAVELAEARGLPVVATNDVRFLEGDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEALENTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSIDEMCELFADIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|39996502|ref|NP_952453.1| DNA polymerase III subunit alpha [Geobacter sulfurreducens PCA]
 gi|39983383|gb|AAR34776.1| DNA polymerase III, alpha subunit [Geobacter sulfurreducens PCA]
 gi|298505519|gb|ADI84242.1| DNA polymerase III, alpha subunit [Geobacter sulfurreducens KN400]
          Length = 1155

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1030 (41%), Positives = 628/1030 (60%), Gaps = 28/1030 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA+ L +++ K+ +   PA+AITD   +F A+EF  K     ++P
Sbjct: 2    SFVHLHLHTQYSLLDGAIRLGDLVKKVKSHDMPAVAITDHGAMFGAMEFYLKCKDKDVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG ++ I          +G         ++LL     GY+ L +LVS +   +      
Sbjct: 62   VIGAEVYIAPGSRFVKEARGGEAGAGY-HLLLLCENMTGYRNLSKLVS-IGFKEGFYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT--FKKLFGDRLYVNLQ 187
            RI    L E   EGLI L+    G +  A+     +VAE   +   +  LF DR Y+ LQ
Sbjct: 120  RIDKEVLAE-NAEGLICLSACLKGEV--AYLCERDRVAEAVDVARWYADLFPDRYYIELQ 176

Query: 188  RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   ++ + ++ ++++A    LPLVATN+  +L+ ED  AH+VL+ +     ++   R 
Sbjct: 177  ENGLVEQDKANRGLLEVAREVGLPLVATNDCHYLNREDARAHEVLLCIQTGKTMNDPSRM 236

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R + D  Y+K   EM + F   PEA+ NTV+IA RC           PRF       +  
Sbjct: 237  RFSVDEFYVKTPEEMAAAFHYAPEAISNTVKIAERCDLSFDFKTYHFPRFEPP----VGL 292

Query: 306  EEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              +  L   A  GLE RL    A+ +       Q Y  RL  EL  I +M F GYFLIVA
Sbjct: 293  SLDQMLEEAARTGLESRLTAIRAKHSSMTAEQEQAYWDRLAIELACIKQMGFPGYFLIVA 352

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK + IPVGPGRGS AGS+ AYA+ ITD+DP+ ++LLFERFLNP+R+SMPD D+D
Sbjct: 353  DFINWAKDHGIPVGPGRGSAAGSLVAYAIRITDLDPIPYNLLFERFLNPERISMPDIDVD 412

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVI+YV  KYG ++V QIITFG++ A+A +RDVGRAL M Y +VDR+ KL+P 
Sbjct: 413  FCQDRREEVIQYVTEKYGRDKVCQIITFGTMSARAVIRDVGRALDMTYGEVDRIAKLVPE 472

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 ++L+ AIA + +  EA  ADP V  LLE++ +LEGL RHASTHAAG+V+    L 
Sbjct: 473  --VLGITLEKAIAQEPKLNEAAEADPRVKELLEVALRLEGLARHASTHAAGVVVAPDVLE 530

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599
            Q  P+Y+D +S    TQ++MK++EK GL+KFDFLGLK LT++  ++  + A +    D++
Sbjct: 531  QFCPVYKDQKSGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIFNAVRHIRADKKPDFDIA 590

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +  DD E+Y LL    T G+FQLESSGMR+ L  ++P C EDIIA+ +LYRPGP+ + +
Sbjct: 591  ALRDDDEESYKLLQAGNTTGVFQLESSGMRELLRKLKPSCFEDIIAVCALYRPGPLGSGM 650

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            V  + +RK+G++K+V   P ++P+LK+T GVI+YQEQVMQIA+ L+GYSL  AD+LRRAM
Sbjct: 651  VDDFIDRKHGRKKVVYDLPQLEPILKDTYGVIVYQEQVMQIARSLAGYSLGGADLLRRAM 710

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK   EM KQ++ F+ GA  NGI    A  IF+L+AKFA+YGFNKSH+AAYA+++YQTA
Sbjct: 711  GKKDPAEMAKQRDIFLEGAKNNGIDLQKAGAIFDLMAKFAEYGFNKSHSAAYALVAYQTA 770

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYPVEF+AA +T +M N +K+ K   D R+  I+++PP +N   + F+V  N I +
Sbjct: 771  YLKAHYPVEFMAALLTEDMANTDKVVKNIADCREMGIEVLPPDINASDLSFRVLGNSIRF 830

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L A+K VG +    I+EA  D PF  + +FC RVD +K+N+RV+ESL+  GA D  G  
Sbjct: 831  GLGAVKNVGESAIEAIIEARGDGPFKDIFEFCERVDLRKVNKRVVESLIKCGAFDSTGGR 890

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-----GTFSDKITLEKFSVENSSVRF 952
            R QL  +L++     Q +++ + +   ++F  E+     G    K+ L      +     
Sbjct: 891  RSQLTAALEDAMSLGQKIQQEKESAQVSLFGAEEIVRTNGNGKGKVQLPDLPEWDDKFLL 950

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              E+  LGF+ +GHPL  ++  +R+               + +++  +V + ++  T+KG
Sbjct: 951  AQEKEALGFFITGHPLGRHEKDIRRFTTADTATLEERADKSEVKICGIVATMKELMTKKG 1010

Query: 1013 SRIGWVTFSE 1022
             R+ + T  +
Sbjct: 1011 DRMAFATLED 1020


>gi|308185755|ref|YP_003929886.1| DNA polymerase III, alpha subunit [Pantoea vagans C9-1]
 gi|308056265|gb|ADO08437.1| DNA polymerase III, alpha subunit [Pantoea vagans C9-1]
          Length = 1160

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1058 (41%), Positives = 631/1058 (59%), Gaps = 64/1058 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G      ++ K AA   PAIAITD  NL   ++F   A +AGI+
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHSAGIK 63

Query: 69   PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            P+IG   ++    M D L               + +L S+  GYQ L  L+SR Y    G
Sbjct: 64   PVIGADFNVASELMGDELT-------------QLTVLASSDTGYQNLTLLISRAYQRGYG 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   WL E+  EGLI+L+GG  G + R+    ++ +  + L  +++ F DR Y+ 
Sbjct: 111  VDGPIIDRDWLIEL-QEGLILLSGGRRGDVGRSLLRGNNALVSQCLSFYQQHFPDRYYLE 169

Query: 186  LQRHRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            L R    D   ES +   V+LA    +P+VATN   F++ ED++AH++ +A+     +  
Sbjct: 170  LIRTGRQDE--ESYLHAAVELAIAEGIPVVATNEVCFINAEDFDAHEIRVAIHDGYTLDD 227

Query: 243  KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RPR  +P  Y+++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP+F   +  
Sbjct: 228  PKRPRNYSPQQYMRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM- 286

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L  K+  GLE RL         +     +Y +RL+ ELNVI +M F GYFL
Sbjct: 287  ----TTEDYLVVKSREGLEERLVFLFPDEAERAEKRPEYDERLEIELNVINQMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC ++RD+VI +V + YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 403  DVDFCMEKRDQVIEHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   +    IA + +      AD  V  L+++++KLEG+ R+A  HA G+VI    
Sbjct: 463  IPPDPGMTLEKAFIA-EPQLPAMYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTK 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595
            ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K   
Sbjct: 522  ITDFAPLYCDEHGQFPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKEGL 581

Query: 596  --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              +D++ IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPG
Sbjct: 582  EPIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPG 641

Query: 654  PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+
Sbjct: 642  PLQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYT 701

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA   GI   +++ IF+L+ KFA YGFNKSH+
Sbjct: 702  LGGADMLRRAMGKKKPEEMAKQRSVFRDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHS 761

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+   
Sbjct: 762  AAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLY 821

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884
             F V +   I Y + AIKGVG      I++A  +   F  L D C+R D+KK+NRRV+E 
Sbjct: 822  PFHVNEAGEIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEK 881

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ +GA D  G  R  L+ +L +  K A    K       ++F    G  ++    E   
Sbjct: 882  LIMSGAFDRLGPHRAALMSALSDALKAADQHAKAEAIGQADMF----GVLAE----EPEQ 933

Query: 945  VENS---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNN 994
            VE S          V+ + E+  LG Y +GHP++ Y K I R +G    ++   T RG  
Sbjct: 934  VEKSYASVTPWPEQVQLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKI 993

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               A +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 994  TVAAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|261211363|ref|ZP_05925651.1| DNA polymerase III alpha subunit [Vibrio sp. RC341]
 gi|260839318|gb|EEX65944.1| DNA polymerase III alpha subunit [Vibrio sp. RC341]
          Length = 1159

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1050 (41%), Positives = 631/1050 (60%), Gaps = 49/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   GI+
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + LL     GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGADFML----------QSEEFGDELTKLTLLAKNNIGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  +WL +   EGLI+L+GG SG + RA    + Q  EK L  ++  F D  Y+ L R
Sbjct: 114  PVLDKAWLID-HAEGLIVLSGGKSGEVGRALLKGNQQQVEKCLEFYQTHFADHFYLELIR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   + +A  +ELP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 173  TGRADE--ESYLHFALDVAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +P  YL+  +EM  +F+D+PEALEN+VEIA+RC+  +++    LP F   E   I 
Sbjct: 231  PKNYSPKQYLRTEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNF-PTEGMAI- 288

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL          AQ   +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 289  ---EDFLVMKSREGLEDRLEFLFPDPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +    IA+ +  +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA + D  F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944
            AGALD  G  R  ++ S+D+  + A    +       ++F    G  +D   ++  +   
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQ 940

Query: 945  VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            V      VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V+
Sbjct: 941  VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1000

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG +T  + +   E   +
Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|154271|gb|AAA27191.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica
            serovar Typhimurium]
          Length = 1160

 Score =  789 bits (2037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1053 (41%), Positives = 630/1053 (59%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114  PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ FC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVSFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP E +AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEIMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQTDMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     + 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTASG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|327484762|gb|AEA79169.1| DNA polymerase III alpha subunit [Vibrio cholerae LMA3894-4]
          Length = 1157

 Score =  788 bits (2034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1050 (41%), Positives = 629/1050 (59%), Gaps = 49/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G++
Sbjct: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGADF----------TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L R
Sbjct: 114  PVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 173  TGRADE--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 231  PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 287  -AIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +    IA+ +  +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA + D  F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944
            AGALD  G  R  ++ S+D+  + A    +       ++F    G  +D   ++  +   
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQ 940

Query: 945  VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            V      VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V+
Sbjct: 941  VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1000

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG +T  + +   E   +
Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|77918826|ref|YP_356641.1| DNA polymerase III subunit alpha [Pelobacter carbinolicus DSM 2380]
 gi|77544909|gb|ABA88471.1| DNA polymerase III, alpha subunit [Pelobacter carbinolicus DSM 2380]
          Length = 1156

 Score =  788 bits (2034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1051 (42%), Positives = 638/1051 (60%), Gaps = 41/1051 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +EK P FVHL VH+ YSLL+GA+ + +++ +      PA+AITD  N+F A+EF  K   
Sbjct: 1    MEKVP-FVHLHVHTQYSLLDGAIRIGDLIKRAEDCGMPAVAITDHGNMFGAVEFFSKLKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN--QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
            + ++PI+GC++ +      + +N   G   +     +VLL    EGYQ L  +VS  Y  
Sbjct: 60   SSVKPIVGCEVYVAPGSRFEKSNVRGGDKAY----HLVLLCQDIEGYQNLCRMVSAGYR- 114

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-R 181
            +      RI    L++   +GLI LT    G +         + A  R      +F + R
Sbjct: 115  EGFYYKPRIDWDLLRKY-NKGLIALTACLGGELPSLLMQGKHEQAVARARDMAAIFDENR 173

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            LY+ LQ +   ++   ++ ++ +     LPLVATN+  +L+ E   AH+VL+ V     +
Sbjct: 174  LYLELQENFIAEQKPVNEGLIAIGKELGLPLVATNDCHYLTRESAAAHEVLLCVQTGKTM 233

Query: 241  SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILPRFI 296
               DR R + D  YLK   EM  +F   PEAL NTV IA RC+  L     H P   +  
Sbjct: 234  DDPDRFRFSNDEFYLKTPEEMAELFHYAPEALANTVAIADRCNLELDFDTYHFPQYEKPA 293

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQ-GAIAKGYHAQD---YRQRLDFELNVIARMK 352
            EK  D +   EE+  R     GLE RLA+   +   + A++   Y  RL  EL  I  M 
Sbjct: 294  EKTLDQVL--EEDSWR-----GLEERLAEIRKVRPDFSAEEEKVYHDRLVRELECINSMG 346

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFLIVADFI WAK N IPVGPGRGS AGS+ AYA+ ITDIDP+ ++LLFERFLNP+R
Sbjct: 347  FPGYFLIVADFINWAKDNGIPVGPGRGSAAGSLVAYAIRITDIDPIPYNLLFERFLNPER 406

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD D+DFC   R++VI YV+ KYG E VAQIITFG++ AK  +RDVGRAL M Y  V
Sbjct: 407  VSMPDIDVDFCIYGREDVIEYVRQKYGEENVAQIITFGTMMAKGVIRDVGRALNMSYGDV 466

Query: 473  DRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            DR+ KL+P      ++L +A+  + R +E +  DP V +LL+I+  LEGL RHASTHAAG
Sbjct: 467  DRIAKLVPT--VLNITLKEALEQEPRLQELQDKDPQVKQLLDIALTLEGLTRHASTHAAG 524

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +V+  +PLS+ +P+Y D +S   VTQF MK++E+ GL+KFDFLGLKTLT++  ++  + +
Sbjct: 525  VVVTPKPLSEYLPLYTDPKSGGQVTQFPMKYVEQIGLVKFDFLGLKTLTVIANAVRLIHE 584

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                + DL L+  DD +TY LL+   T G+FQLESSGM++ L  ++P C EDIIA+ +LY
Sbjct: 585  GNDPEFDLKLVGDDDPDTYRLLSAGETTGVFQLESSGMKELLVKLKPSCFEDIIAVCALY 644

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+ + +V  +  RK+GK++I    P ++P+LK+T GVI+YQEQVM IAQ+L+ YSL 
Sbjct: 645  RPGPLGSGMVDDFILRKHGKKEITYDFPQLEPILKDTYGVIVYQEQVMLIAQVLARYSLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQKE F+SGA +N +    A  +F+L+ KFA YGFNKSH+AA
Sbjct: 705  GADLLRRAMGKKKPEEMAKQKEIFMSGARENELDVKKAEAVFDLMEKFAAYGFNKSHSAA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+++Y TA++KTHYPVEF+AA +T +M+N EK+ K   + R   I+++PP +N     F
Sbjct: 765  YALVAYHTAYLKTHYPVEFMAALLTEDMENTEKVIKNINEVRSMGIEVLPPDINASSSSF 824

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             V DN I + L A+KGVG      I+E   ++PF +L +FC RVD +K+N++V+E+L+  
Sbjct: 825  TVHDNAIRFGLGAVKGVGGAAIDAILEVRQEQPFTTLHEFCERVDLRKVNKKVVEALIKC 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEKGT-FSDKITLEK 942
            GA D  G  R Q L  L+   +  Q V++ +     ++F       ++GT +     +E+
Sbjct: 885  GAFDSLGGHRAQYLVVLEEAMEIGQKVQREKAEGQASLFGTDEIVSQRGTSYGVLPEMEE 944

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            +S     V+   E+  LGFY +GHPL  Y+ ++R+       +         +RL  MV 
Sbjct: 945  WS---DKVKLGFEKESLGFYITGHPLGRYQEVIRRFANCTTADVAERADKEEVRLCGMVS 1001

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +   T+KG R+ +VT  + +   E   FP
Sbjct: 1002 GIKDLVTKKGERMAFVTLEDLSGFVEMVVFP 1032


>gi|113970961|ref|YP_734754.1| DNA polymerase III subunit alpha [Shewanella sp. MR-4]
 gi|113885645|gb|ABI39697.1| DNA polymerase III, alpha subunit [Shewanella sp. MR-4]
          Length = 1158

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1050 (41%), Positives = 620/1050 (59%), Gaps = 50/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NNL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-------SIVLLVSTAEGYQRLIELVSRMYL 121
            PIIG   D  MQ               VP       ++ ++    +GYQ L +++S+ YL
Sbjct: 64   PIIGA--DFWMQ---------------VPGFDDEFCALTIIAMNNDGYQNLTQIISQAYL 106

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                   V I   WL     EG+++L+GG  G + +A    ++   E     +++ F  R
Sbjct: 107  RGHVAGRVVIDQEWLVTY-NEGILLLSGGKEGDVGKALLKGNNTQVESLCEFYQQHFEGR 165

Query: 182  LYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ L R    D  R   + V LA    +P+VATN  +FL  ED+EAH++ +A+     +
Sbjct: 166  YYLELLRTGRTDEERYLHMAVGLAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTL 225

Query: 241  SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +   RP+  +   YL++  EM  +F+D+P ALENTVEIA+RC+  ++++   LP F   +
Sbjct: 226  ADPRRPKKYSEQQYLRSEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYFLPNFPTGD 285

Query: 300  CDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                    E+ L + +  GLE RL         +     +Y +RLD EL VI +M F GY
Sbjct: 286  M-----SIEDYLVDCSKKGLEERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGY 340

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMP
Sbjct: 341  FLIVMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ 
Sbjct: 401  DFDVDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 460

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP +P   ++ +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI  
Sbjct: 461  KLIPPEPGMTLA-KAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAP 519

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
              ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +  VK 
Sbjct: 520  TKITDFSPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKN 579

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                V +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+R
Sbjct: 580  GRPPVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639

Query: 652  PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PGP+ + +V N   RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSG
Sbjct: 640  PGPLQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSG 699

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            Y+L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKS
Sbjct: 700  YTLGGADMLRRAMGKKKPEEMAKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKS 759

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + I+PP VN  
Sbjct: 760  HSAAYALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKG 819

Query: 825  CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
               F V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E
Sbjct: 820  LFKFTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIE 879

Query: 884  SLVFAGALDCFGYSRMQLLQSL-DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
             L+ AGALD  G  R  ++ +L + I    Q  +     +H+            K    +
Sbjct: 880  KLICAGALDALGPHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVE 939

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             +     +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV
Sbjct: 940  CTPWPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVV 999

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++GS++G +T  + +   E   F
Sbjct: 1000 ATRVMLTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|271499510|ref|YP_003332535.1| DNA polymerase III subunit alpha [Dickeya dadantii Ech586]
 gi|270343065|gb|ACZ75830.1| DNA polymerase III, alpha subunit [Dickeya dadantii Ech586]
          Length = 1160

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1051 (41%), Positives = 630/1051 (59%), Gaps = 50/1051 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F   A +AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+SR Y    G   
Sbjct: 64   PIIGADFYL----------QSEELGDELAHLTVLAMNNEGYQNLTLLISRAYQRGYGADG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E    G+++L+GG  G I +     +  + E+ +  +++ F  R Y+ L R
Sbjct: 114  PTIDREWLVE-HQAGILLLSGGRHGDIGKFLLRGNQVLVEQSVAFYQQHFPQRFYLELTR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       ++LA  H LP+VATN+  F+S++D+EAH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAIKLATAHGLPVVATNDVCFISQDDFEAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEDEMCELFADIPEALINTVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L   A  GLE RLA     +   AQ   +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVMCAKKGLEERLAFLFPDEEVRAQRRPEYDERLDIELGVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDLVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     VD+
Sbjct: 527  PLYCDQEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARREKQGLEPVDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDIQWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA K G+   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFKEGAEKMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +KI     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I++A  +   F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIDARNNGGYFRDLFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A D  G  R  L+ SL +  K A    K       ++F    G  ++  T E+     S+
Sbjct: 887  AFDRLGPHRAALMNSLADAMKSADQHAKAEAIGQADMF----GVLAE--TPEQVEQSYST 940

Query: 950  VR-------FENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            V         + E+  LG Y +GHP++ Y K I R  G    ++   T RG       +V
Sbjct: 941  VPPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLV 1000

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++ +   T++G+RIG  T  + +   E   F
Sbjct: 1001 LAARVMVTKRGNRIGVCTLDDRSGRLEVMLF 1031


>gi|117921241|ref|YP_870433.1| DNA polymerase III subunit alpha [Shewanella sp. ANA-3]
 gi|117613573|gb|ABK49027.1| DNA polymerase III, alpha subunit [Shewanella sp. ANA-3]
          Length = 1158

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1050 (41%), Positives = 621/1050 (59%), Gaps = 50/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NNL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-------SIVLLVSTAEGYQRLIELVSRMYL 121
            PIIG   D  MQ               VP       ++ ++    +GYQ L +++S+ YL
Sbjct: 64   PIIGA--DFWMQ---------------VPGFDGEFCALTIIAMNNDGYQNLTQIISQAYL 106

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                +  V I   WL     EG+++L+GG  G + +A    ++   E     +++ F  R
Sbjct: 107  RGHVQGRVVIDQEWLVTY-NEGILLLSGGREGDVGKALLKGNNTQVESLCEFYQQHFEGR 165

Query: 182  LYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ L R    D  R   + V LA    +P+VATN  +FL  ED+E+H++ +A+     +
Sbjct: 166  YYLELLRTGRTDEERYLHMAVGLAQEKGIPVVATNQVVFLKPEDFESHEIRVAIHDGFTL 225

Query: 241  SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +   RP+  +   YL++  EM  +F+D+P ALENTVEIA+RC+  ++++   LP F   +
Sbjct: 226  ADPRRPKKYSEQQYLRSEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYFLPNFPTGD 285

Query: 300  CDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                    E+ L + +  GLE RL         +     +Y +RLD EL VI +M F GY
Sbjct: 286  M-----SIEDYLVDCSKKGLEERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGY 340

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMP
Sbjct: 341  FLIVMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ 
Sbjct: 401  DFDVDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 460

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP +P   ++ +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI  
Sbjct: 461  KLIPPEPGMTLA-KAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAP 519

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
              ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +  VK 
Sbjct: 520  TKITDFSPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKN 579

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                V +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+R
Sbjct: 580  GRPPVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639

Query: 652  PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PGP+ + +V N   RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSG
Sbjct: 640  PGPLQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSG 699

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            Y+L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKS
Sbjct: 700  YTLGGADMLRRAMGKKKPEEMAKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKS 759

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + I+PP VN  
Sbjct: 760  HSAAYALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKG 819

Query: 825  CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
               F V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E
Sbjct: 820  LFKFTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIE 879

Query: 884  SLVFAGALDCFGYSRMQLLQSL-DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
             L+ AGALD  G  R  ++ +L + I    Q  +     +H+            K    +
Sbjct: 880  KLICAGALDALGPHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVE 939

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             +     +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV
Sbjct: 940  CTPWPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVV 999

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++GS++G +T  + +   E   F
Sbjct: 1000 ATRVMLTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|254508656|ref|ZP_05120771.1| putative DNA polymerase IIIalpha subunit subfamily [Vibrio
            parahaemolyticus 16]
 gi|219548413|gb|EED25423.1| putative DNA polymerase IIIalpha subunit subfamily [Vibrio
            parahaemolyticus 16]
          Length = 1159

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1052 (41%), Positives = 626/1052 (59%), Gaps = 53/1052 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A   GI+
Sbjct: 4    PKFVHLRVHSDFSMVDGLSKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGCGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  MQ         K        + +L +   GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGA--DFAMQSAAFGDELTK--------LTVLAADNTGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+ +EGLI+L+GG SG I +A    + + A++    ++  F DR Y+ L R
Sbjct: 114  PVIDKEWLVEL-SEGLILLSGGKSGEIGKALLKGNQKTAQECAEFYQTHFADRFYLELTR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   ++ A   ELP+VATN+ +FL E  ++AH++ +A+     +    R
Sbjct: 173  TGRADE--ESYLHFALEFAEQFELPVVATNDVVFLDETLFDAHEIRVAIHDGYTLEDPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             EE   L  K+  GLE RL         +     +Y +RL  EL VI  M F GYFLIV 
Sbjct: 286  MEETEFLVMKSEEGLEERLEFLFPDPKVRAERRPEYDERLRIELEVINNMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +    E   AD  V  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFKAEPALPELYDADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V
Sbjct: 525  FAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLAKEGKAPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  +++LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  AIESIPLDDQASFNLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            + +V N  +RK+G+E I          S+  ++DP    T G+I+YQEQVMQIAQ+LSGY
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILDP----TYGIILYQEQVMQIAQVLSGY 700

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH
Sbjct: 701  TLGGADMLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSH 760

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N+  
Sbjct: 761  SAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECLRMKLKVLPPDINSGL 820

Query: 826  VDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLE 883
              F V  D  I Y + AIKGVG      I+E+ + D  F  L DFC+R+D KK+N+RV+E
Sbjct: 821  YRFNVDEDGAIVYGIGAIKGVGEGPIEAILESRNRDGHFKDLFDFCARIDLKKVNKRVIE 880

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITL 940
             L++AGALD  G  R  ++ SLD+  K A    +       ++F           +K T 
Sbjct: 881  KLIYAGALDRLGPHRAAMMASLDDAVKAASQHHQAEAFGQSDLFGVLTEAPEEVENKYT- 939

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
             K +     V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ ++ +
Sbjct: 940  -KVAPWPEKVWLEGERTTLGLYLTGHPINAYLKELGKYTSCRLKDATPTRRDQSVTVSGL 998

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V++ +   T++G+RIG +T  + +   E   F
Sbjct: 999  VIAARVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|114048185|ref|YP_738735.1| DNA polymerase III subunit alpha [Shewanella sp. MR-7]
 gi|113889627|gb|ABI43678.1| DNA polymerase III, alpha subunit [Shewanella sp. MR-7]
          Length = 1158

 Score =  786 bits (2030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1050 (41%), Positives = 620/1050 (59%), Gaps = 50/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NNL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-------SIVLLVSTAEGYQRLIELVSRMYL 121
            PIIG   D  MQ               VP       ++ ++    +GYQ L +++S+ YL
Sbjct: 64   PIIGA--DFWMQ---------------VPGFDDEFCALTIIAMNNDGYQNLTQIISQAYL 106

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                   V I   WL     EG+++L+GG  G + +A    ++   E     +++ F  R
Sbjct: 107  RGHVAGRVVIDQEWLVTY-NEGILLLSGGKEGDVGKALLKGNNTQVESLCEFYQQHFEGR 165

Query: 182  LYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ L R    D  R   + V LA    +P+VATN  +FL  ED+EAH++ +A+     +
Sbjct: 166  YYLELLRTGRPDEERYLHMAVGLAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTL 225

Query: 241  SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +   RP+  +   YL++  EM  +F+D+P ALENTVEIA+RC+  ++++   LP F   +
Sbjct: 226  ADPRRPKKYSEQQYLRSEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYFLPNFPTGD 285

Query: 300  CDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                    E+ L + +  GLE RL         +     +Y +RLD EL VI +M F GY
Sbjct: 286  M-----SIEDFLVDCSKKGLEERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGY 340

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMP
Sbjct: 341  FLIVMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ 
Sbjct: 401  DFDVDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 460

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP +P   ++ +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI  
Sbjct: 461  KLIPPEPGMTLA-KAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAP 519

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
              ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +  VK 
Sbjct: 520  TKITDFSPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKN 579

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                V +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+R
Sbjct: 580  GRPPVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639

Query: 652  PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PGP+ + +V N   RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSG
Sbjct: 640  PGPLQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSG 699

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            Y+L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKS
Sbjct: 700  YTLGGADMLRRAMGKKKPEEMAKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKS 759

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + I+PP VN  
Sbjct: 760  HSAAYALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKG 819

Query: 825  CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
               F V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E
Sbjct: 820  LFKFTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIE 879

Query: 884  SLVFAGALDCFGYSRMQLLQSL-DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
             L+ AGALD  G  R  ++ +L + I    Q  +     +H+            K    +
Sbjct: 880  KLICAGALDALGPHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVE 939

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             +     +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV
Sbjct: 940  CTPWPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVV 999

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++GS++G +T  + +   E   F
Sbjct: 1000 ATRVMLTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|295098673|emb|CBK87763.1| DNA polymerase III, alpha subunit [Enterobacter cloacae subsp.
            cloacae NCTC 9394]
          Length = 1160

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F   A  AG++
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTAHGAGLK 63

Query: 69   PIIGCQLDIDMQDNL---KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PI+G   D  +Q  L   +MT            I +L     GYQ L  L+S+ Y    G
Sbjct: 64   PIVGA--DFHVQSELLGDEMTQ-----------ISVLAMNNTGYQNLTLLISKAYQRGYG 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   WL E+  EGL++++GG  G + +     ++ + ++ +  +++ F DR Y+ 
Sbjct: 111  ALGPWIDRDWLAEL-NEGLLLISGGRMGDVGKCLLRGNNALVDQCVSFYEEYFPDRYYLE 169

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R  R  +       V LA    LP+VATN+  FL   D++AH++ +A+     +    
Sbjct: 170  LIRTGRADEESYLHAAVALAEARGLPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPK 229

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RPR  +   Y+++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP+F   +    
Sbjct: 230  RPRNYSSQQYMRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM--- 286

Query: 304  QKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                E+ L  K+  GLE RL       A+ K    + Y +RLD EL VI +M F GYFLI
Sbjct: 287  --TTEDFLVMKSKEGLEERLEFLFPDEAVRKEKRPE-YDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---- 595
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K    
Sbjct: 523  TDFAPLYCDEAGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEP 582

Query: 596  -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSIFEDGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V D+  I Y + AIKGVG      I+EA  +   F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + +GA D  G  R  L+ SL +  K A    K       ++F    G  +++    + S 
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAEEPEQIEQSY 938

Query: 946  EN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
             N       V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  SNCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGHRLKDMHPTERGKITTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|145300046|ref|YP_001142887.1| DNA polymerase III, alpha subunit [Aeromonas salmonicida subsp.
            salmonicida A449]
 gi|142852818|gb|ABO91139.1| DNA polymerase III, alpha subunit [Aeromonas salmonicida subsp.
            salmonicida A449]
          Length = 1161

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1048 (41%), Positives = 625/1048 (59%), Gaps = 45/1048 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +N I+   AA+  PA+A+TD  N+   + F   A   GI+
Sbjct: 6    PRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHGKGIK 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G    +      + +  G   F     + LL    +GYQ +  L+SR Y     +  
Sbjct: 66   PIVGADFWV------QSSELGDEQF----RLTLLAMDNDGYQNITLLISRGYQRGHVQGR 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   +G+I+L+GG  G + +     + Q+ E  L  ++  F D  Y+ L R
Sbjct: 116  PVIDKEWLTD-HAKGVIVLSGGREGDVGKFLLKGNRQMTESCLAFYQTHFPDAYYLELLR 174

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V +A   ELP+VATN  +FL+ ED++AH++ +A+     +  K RPR
Sbjct: 175  TGRPDEEVYLHMAVAIATEFELPVVATNEVVFLNAEDFDAHEIRVAIHDGYTLMDKRRPR 234

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL+++ EM  +F+D+PEALENTVEIA+RC+  +++    LP F   +       
Sbjct: 235  RYSPQQYLRSQEEMAELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPTGDM-----T 289

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 290  TEDFLVAKSKEGLEERLAFLFPDPAVRAVKRGEYDERLEIELKVINQMGFPGYFLIVMEF 349

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 350  IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 409

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRRDEVI +V + YG + V+QIITFGS+ AKA +RDVGR L   Y  VDR+ KLIP DP
Sbjct: 410  MDRRDEVIEHVSDMYGRDAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDP 469

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E    D  V  L++++++LEG+ R+A  HA G+VI    ++   
Sbjct: 470  GMTLA-KAFEAELKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFA 528

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     VD+
Sbjct: 529  PLYCDDSGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDI 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP  D +++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 589  AAIPIHDKKSFDLLQRFETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 648

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N   RK+GKE I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 649  MVDNFIERKHGKEAISYPDEKWQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGAD 708

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA KNGI   +AV IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 709  MLRRAMGKKNPAEMAKQRSGFEEGAVKNGIDGELAVKIFDLVEKFAGYGFNKSHSAAYAL 768

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTH+P EF+AA MT +MDN +KI     + ++  + ++PP VNT    F V 
Sbjct: 769  VSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVTLVDECQRMGLTVIPPDVNTGRYRFSVN 828

Query: 832  -DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  I Y + A+KGVG      I+ A   D PF  L DFC+RVD KK+N+RV+E L+ +G
Sbjct: 829  EDGHIVYGIGAVKGVGEGPIDAILSARDQDGPFRDLFDFCNRVDIKKINKRVMEKLILSG 888

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947
            A+D  G  R  L+ +L+   + A+   K +     ++F    G  + +I   K +  N  
Sbjct: 889  AMDRLGPHRAALMATLEEAMRAAEQHAKAQAVGQVDMF----GVLTQEIDDVKKAFANVP 944

Query: 948  ---SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   LR+       +   T R      A +V++ 
Sbjct: 945  HWPDKVWLEGERETLGLYLTGHPINQYSGELRRYTSGRLCDLHPTSRDTVTTAAGLVIAA 1004

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+++G  T  + +   +   F
Sbjct: 1005 RSMVTKRGNKMGIFTLDDRSGRLDVTLF 1032


>gi|330830740|ref|YP_004393692.1| DNA polymerase III subunit alpha [Aeromonas veronii B565]
 gi|328805876|gb|AEB51075.1| DNA polymerase III, alpha subunit [Aeromonas veronii B565]
          Length = 1159

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1048 (41%), Positives = 626/1048 (59%), Gaps = 45/1048 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +N I+   AA+  PA+A+TD  N+   + F   A   GI+
Sbjct: 4    PRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHGKGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G    +   D L     G   F     + LL    +GYQ +  L+SR Y     +  
Sbjct: 64   PIVGADFWV-QSDEL-----GDEQF----RLTLLAMDNDGYQNITLLISRGYQRGHVQGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  SWL E   +G+I+L+GG  G + +     + Q+ E+ +  ++  F D  Y+ L R
Sbjct: 114  PVIDKSWLAE-HAKGVIVLSGGREGDVGKFLLKGNRQMTEQCVAFYQTHFPDAYYLELLR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V +A    LP+VATN  +FL+ +D++AH++ +A+     +  K RPR
Sbjct: 173  TGRPDEEVYLHMAVAIATEFALPVVATNEVVFLNADDFDAHEIRVAIHDGYTLMDKRRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL+++ EM  +F+D+PEALENTVEIA+RC+  +++    LP F   +       
Sbjct: 233  RYSPQQYLRSQEEMAELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVAKSKEGLEERLEFLFPDPQVRAERRPEYDERLDIELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRRDEVI +V + YG + V+QIITFGS+ AKA +RDVGR L   Y  VDR+ KLIP DP
Sbjct: 408  MDRRDEVIEHVSDMYGRDAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E    D  V  L++++++LEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     VD+
Sbjct: 527  PLYCDDEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ LL    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPIDDKKSFDLLQRYETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G E I        H  + P+L+ T G+I+YQEQVMQIAQ L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGNEAISYPDEKWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRAGFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTH+P EF+AA MT +MDN +KI     + ++  + ++PP VNT    F V 
Sbjct: 767  VSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVTLVDECQRMGLTVIPPDVNTGRYRFSVN 826

Query: 832  -DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  I Y + A+KGVG      I+ A   D PF  L DFC+RVD KKLN+RV+E L+ +G
Sbjct: 827  EDGHIVYGIGAVKGVGEGPIDAILSARDQDGPFRDLFDFCNRVDIKKLNKRVMEKLILSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947
            A+D  G  R  L+ +L+   + A+   K +     ++F    G  +++I   K +  N  
Sbjct: 887  AMDRLGPHRAALMATLEEAMRAAEQHAKAQAVGQVDMF----GVLTEEIDDVKKAFANVP 942

Query: 948  ---SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   LR+       +   T R      A +V++ 
Sbjct: 943  HWPDKVWLEGERETLGLYLTGHPINQYSSELRRYTSGRLCDLHPTSRDTVTTAAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+++G  T  + +   +   F
Sbjct: 1003 RSMVTKRGNKMGIFTLDDRSGRLDVTLF 1030


>gi|95930421|ref|ZP_01313157.1| DNA polymerase III, alpha subunit [Desulfuromonas acetoxidans DSM
            684]
 gi|95133461|gb|EAT15124.1| DNA polymerase III, alpha subunit [Desulfuromonas acetoxidans DSM
            684]
          Length = 1158

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1039 (41%), Positives = 629/1039 (60%), Gaps = 24/1039 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +HS YSLL+GA+ + N+++++   + PA+AITD  N+F A+EF  KA AAG++P
Sbjct: 5    NFVHLHLHSQYSLLDGAIKIPNLIERVKEYKMPAVAITDHGNMFGAMEFYTKATAAGVKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +      + +N   +   +   +VLL     GY+ L  LVS  Y  +      
Sbjct: 65   IIGCEVYVAPGRRTEKSNARGSSEASY-HLVLLCQNKIGYRNLCYLVSTAYR-EGFYYKP 122

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            RI    L E   EGLI ++    G I           A  R     ++F D R Y+ LQ 
Sbjct: 123  RIDWDLLTEY-NEGLIAMSACLGGEIPTLINLGRPDDALARAEQMAQVFDDDRFYLELQE 181

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++    + ++ ++    LPLVATN+  +L  ED  AH+VL+ +     +  + R R
Sbjct: 182  NGIPEQATANTGLIDISGKLGLPLVATNDCHYLRREDAYAHEVLLCIQTGKTMDDEKRMR 241

Query: 248  VTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  Y++   EM  +FS +P+AL+NTVEIA+RC+          P++ EK  D   K 
Sbjct: 242  FANDGFYVRTPDEMRELFSHVPQALDNTVEIAQRCNLDFDFDTYHFPQY-EKPAD---KT 297

Query: 307  EENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             +  L   A  GLE RL    +          Q Y+ RL+ EL  I  M F GYF+IVAD
Sbjct: 298  LDEVLEEMARDGLEDRLKMIRSLNPDLSAEEEQVYQDRLERELKTIRDMGFPGYFIIVAD 357

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK ++IPVGPGRGS AGS+ A+A+ ITDIDP+ + LLFERFLNP+R+SMPD D+DF
Sbjct: 358  FINWAKDHDIPVGPGRGSAAGSLVAFAIRITDIDPIPYDLLFERFLNPERISMPDIDVDF 417

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   R++VI+YVQ +YG   VAQIITFG+L AK  ++DVGRAL MPY +VD+L KL+P  
Sbjct: 418  CIYGREKVIQYVQEEYGAPNVAQIITFGTLGAKGVIKDVGRALNMPYGEVDKLSKLVP-- 475

Query: 483  PAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                ++L+ A+  + R +E   +D  V  LL ++  LEGL RHASTHAAG+V+   PL+ 
Sbjct: 476  AVLNITLKDALQQEPRIQEMAKSDVRVKELLNVALSLEGLTRHASTHAAGVVVTPNPLTD 535

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600
             +P+Y D +S   VTQF M ++EK GL+KFDFLGLKTLT++  +L  + + +    DL++
Sbjct: 536  YLPLYTDQKSGGQVTQFPMSYVEKIGLVKFDFLGLKTLTVIDNALRLIHSAKNPDFDLNV 595

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            I  DD  TY LL+   T G+FQLESSGM++ L  ++P+C EDIIA  +LYRPGP+ + +V
Sbjct: 596  IGDDDEATYELLSHGDTTGVFQLESSGMKELLVKLKPNCFEDIIAACALYRPGPLGSGMV 655

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G++ IV   P ++P+LK+T GVI+YQEQVM IAQ L+ YSL  AD+LRRAMG
Sbjct: 656  DDFILRKHGQKDIVYDFPQLEPILKDTYGVIVYQEQVMLIAQTLANYSLGGADLLRRAMG 715

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM+KQK  F+ GA +N +    A  +F+L+A FA YGFNKSH+AAYA+++Y TA+
Sbjct: 716  KKKPEEMEKQKVLFLKGAKENNLDPKKAEAVFDLMAMFAAYGFNKSHSAAYALVAYHTAY 775

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K HYPVEF+AA +T +M+N +K+ K   + R   I+++PP +N     F V +N + + 
Sbjct: 776  LKAHYPVEFMAALLTEDMENTDKVIKNIAEVRSMGIEVLPPDINASIRSFTVHENAMRFG 835

Query: 839  LAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L A+KGVGT     I+     D P+DSL DFC RVD  K+N++V+ESL+  GA D  G  
Sbjct: 836  LGAVKGVGTAALDSIIHVREVDGPYDSLNDFCERVDLGKVNKKVVESLIKCGAFDSLGGK 895

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFEN 954
            R Q + +L++  +  Q V++ +    E++F  E+    + S    L   +  +  +R  N
Sbjct: 896  RAQYMDALESAMEIGQQVQREKQQGQESLFGMEEMVTRSGSSYGELPDVAEWDDKLRLNN 955

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LGFY +GHPL  Y   +++         V       +R+  +V  K++  T+KG R
Sbjct: 956  EKEALGFYITGHPLSRYAEDIKRFATCDLSGLVERNDKEEVRVCGIVSGKKELVTKKGDR 1015

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + ++T  +     E   FP
Sbjct: 1016 MAFITLEDLTGSLEVVVFP 1034


>gi|296101353|ref|YP_003611499.1| DNA polymerase III subunit alpha [Enterobacter cloacae subsp. cloacae
            ATCC 13047]
 gi|295055812|gb|ADF60550.1| DNA polymerase III subunit alpha [Enterobacter cloacae subsp. cloacae
            ATCC 13047]
          Length = 1160

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1056 (41%), Positives = 630/1056 (59%), Gaps = 60/1056 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F   A  AG++
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTAHGAGMK 63

Query: 69   PIIGCQLDIDMQDNL---KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PI+G   D  +Q  L   +MT            I +L     GYQ L  L+S+ Y    G
Sbjct: 64   PIVGA--DFHVQSELLGDEMTQ-----------ISVLAMNNTGYQNLTLLISKAYQRGYG 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   WL E+  EGL++++GG  G + +     +S + ++ +  +++ F DR Y+ 
Sbjct: 111  ALGPWIDRDWLAEL-NEGLLLISGGRMGDVGKCLLRGNSALVDQCVSFYEEYFPDRYYLE 169

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R  R  +       V LA    LP+VATN+  FL   D++AH++ +A+     +    
Sbjct: 170  LIRTGRPDEESYLHAAVALAEARGLPVVATNDVRFLEAGDFDAHEIRVAIHDGFTLDDPK 229

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RPR  +   Y+++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP+F   E    
Sbjct: 230  RPRNYSAQQYMRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGEM--- 286

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV
Sbjct: 287  --TTEDFLVMKSKEGLEERLEFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 345  MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P
Sbjct: 405  DFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 465  PDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     
Sbjct: 524  DFAPLYCDEAGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPP 583

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+
Sbjct: 584  LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643

Query: 656  DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L 
Sbjct: 644  QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 704  GADMLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAA 763

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F
Sbjct: 764  YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886
             V D+  I Y + AIKGVG      I+EA  +   F  L D C+R D+KKLNRRVLE L+
Sbjct: 824  HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLI 883

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             +GA D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E
Sbjct: 884  MSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIE 935

Query: 947  NS---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIR 996
             S          V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG    
Sbjct: 936  QSYASCLPWPEQVVLDGERETLGLYLTGHPINQYIKEIERYVGGYRLKDMHPTERGKITT 995

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             A +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 996  AAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|206579408|ref|YP_002240328.1| DNA polymerase III, alpha subunit [Klebsiella pneumoniae 342]
 gi|288937034|ref|YP_003441093.1| DNA polymerase III subunit alpha [Klebsiella variicola At-22]
 gi|290512455|ref|ZP_06551821.1| DNA polymerase III subunit alpha [Klebsiella sp. 1_1_55]
 gi|206568466|gb|ACI10242.1| DNA polymerase III, alpha subunit [Klebsiella pneumoniae 342]
 gi|288891743|gb|ADC60061.1| DNA polymerase III, alpha subunit [Klebsiella variicola At-22]
 gi|289774796|gb|EFD82798.1| DNA polymerase III subunit alpha [Klebsiella sp. 1_1_55]
          Length = 1160

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1053 (41%), Positives = 628/1053 (59%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D  +Q +L               + +L +   GYQ L  L+SR Y    G   
Sbjct: 64   PIVGA--DFHVQCDLLGDE--------FTELTVLAANNTGYQNLTLLISRAYQRGYGALG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+GG  G +  +    +  + E+ +  +++ F DR ++ L R
Sbjct: 114  PWIDRDWLVE-HQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V LA    LP+VATN+  FL   D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEEAYLHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEALEN+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y QRLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVMKSKEGLEERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D +   PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEGPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSIFEDGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA  +   F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|292489212|ref|YP_003532099.1| DNA polymerase III subunit alpha [Erwinia amylovora CFBP1430]
 gi|292898554|ref|YP_003537923.1| DNA polymerase III subunit alpha [Erwinia amylovora ATCC 49946]
 gi|291198402|emb|CBJ45509.1| DNA polymerase III alpha subunit [Erwinia amylovora ATCC 49946]
 gi|291554646|emb|CBA22332.1| DNA polymerase III alpha subunit [Erwinia amylovora CFBP1430]
          Length = 1160

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1052 (41%), Positives = 624/1052 (59%), Gaps = 52/1052 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G    + ++   A+   PAI ITD  NL   ++F   A   G++
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTSPLVKYAASIGMPAIGITDFTNLCGLVKFYGTAHGQGMK 63

Query: 69   PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PIIG   ++    M D L               I +L +  EGYQ L  L+SR Y    G
Sbjct: 64   PIIGADFNVSSEAMGDELT-------------QITVLAADNEGYQNLTLLISRAYQRGYG 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   WL E   +GLI+L+GG  G + +     +     + L  +++ F DR Y+ 
Sbjct: 111  PAGPTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNHTQVRECLSFYQQHFPDRYYLE 169

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R  R  +       V+LA    +P+VATN   FL+E D++AH++ +A+     +    
Sbjct: 170  LIRTGRPDEEAYLHAAVELAVAQGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDPK 229

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RPR  +P  YL++  EM  +FSD+PEALEN+VEIARRC+  +++    LP+F   E    
Sbjct: 230  RPRHYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGEYFLPQFPTGEM--- 286

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                E+ L  ++  GLE RL         +     DY QRLD ELNVI +M F GYFLIV
Sbjct: 287  --TTEDFLVVESKKGLEERLEFLFPDEKVRAERRADYDQRLDIELNVINQMGFPGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 345  MEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P
Sbjct: 405  DFCMEKRDLVIEHVAEMYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 465  PDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQIT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D   D PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +  K     
Sbjct: 524  DFAPLYCDENGDHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEAP 583

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+
Sbjct: 584  IDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPL 643

Query: 656  DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL 
Sbjct: 644  QSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLG 703

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK   EM +Q+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 704  GADMLRRAMGKKNPVEMARQRGGFEDGAKARGIDGELAIKIFDLVEKFAGYGFNKSHSAA 763

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F
Sbjct: 764  YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECLRMGLKVLPPDINSGLYQF 823

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886
             V D   I Y + AIKGVG      I+EA  +   F  L D C+R D+KK+NRR+LE L+
Sbjct: 824  HVNDEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKLI 883

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             +GA D  G  R  L+ +L +  K A    K       ++F    G  ++     + S  
Sbjct: 884  MSGAFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMF----GVLAEAPEQVEQSYS 939

Query: 947  N-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAM 1000
            +       ++ + E+  LG Y +GHP++ Y K I R +G +  ++   T RG     A +
Sbjct: 940  DVKPWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGL 999

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 1000 VVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|229507681|ref|ZP_04397186.1| DNA polymerase III alpha subunit [Vibrio cholerae BX 330286]
 gi|229512124|ref|ZP_04401603.1| DNA polymerase III alpha subunit [Vibrio cholerae B33]
 gi|229513887|ref|ZP_04403349.1| DNA polymerase III alpha subunit [Vibrio cholerae TMA 21]
 gi|229519259|ref|ZP_04408702.1| DNA polymerase III alpha subunit [Vibrio cholerae RC9]
 gi|229607185|ref|YP_002877833.1| DNA polymerase III subunit alpha [Vibrio cholerae MJ-1236]
 gi|255747058|ref|ZP_05421003.1| DNA polymerase III alpha subunit [Vibrio cholera CIRS 101]
 gi|262167733|ref|ZP_06035435.1| DNA polymerase III alpha subunit [Vibrio cholerae RC27]
 gi|262189888|ref|ZP_06048212.1| DNA polymerase III alpha subunit [Vibrio cholerae CT 5369-93]
 gi|14195659|sp|P52022|DPO3A_VIBCH RecName: Full=DNA polymerase III subunit alpha
 gi|229343948|gb|EEO08923.1| DNA polymerase III alpha subunit [Vibrio cholerae RC9]
 gi|229349068|gb|EEO14025.1| DNA polymerase III alpha subunit [Vibrio cholerae TMA 21]
 gi|229352089|gb|EEO17030.1| DNA polymerase III alpha subunit [Vibrio cholerae B33]
 gi|229355186|gb|EEO20107.1| DNA polymerase III alpha subunit [Vibrio cholerae BX 330286]
 gi|229369840|gb|ACQ60263.1| DNA polymerase III alpha subunit [Vibrio cholerae MJ-1236]
 gi|255735460|gb|EET90860.1| DNA polymerase III alpha subunit [Vibrio cholera CIRS 101]
 gi|262023798|gb|EEY42497.1| DNA polymerase III alpha subunit [Vibrio cholerae RC27]
 gi|262034232|gb|EEY52648.1| DNA polymerase III alpha subunit [Vibrio cholerae CT 5369-93]
          Length = 1159

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1050 (41%), Positives = 628/1050 (59%), Gaps = 49/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G++
Sbjct: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGADF----------TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L R
Sbjct: 114  PVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 173  TGRADE--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 231  PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 287  -AIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +    IA+ +  +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA +    F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944
            AGALD  G  R  ++ S+D+  + A    +       ++F    G  +D   ++  +   
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQ 940

Query: 945  VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            V      VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V+
Sbjct: 941  VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1000

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG +T  + +   E   +
Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|117926508|ref|YP_867125.1| DNA polymerase III subunit alpha [Magnetococcus sp. MC-1]
 gi|117610264|gb|ABK45719.1| DNA polymerase III, alpha subunit [Magnetococcus sp. MC-1]
          Length = 1195

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/1071 (42%), Positives = 645/1071 (60%), Gaps = 59/1071 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL   + L   +++  + Q PA+A+TD  NLF A++F      AGI+P
Sbjct: 4    SFVHLHLHTGYSLLTSTVRLKQAIERAQSLQMPALALTDQGNLFGAIQFYSGCLKAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G QL +      K     K        ++LL    EG++ L+ L+++ +L D      
Sbjct: 64   LLGAQLYLVPDHTNKEERVDKE---VRDQVILLCRNEEGWKNLMRLIAKGHL-DGSHGLP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-----RLYV 184
            RI L  L++  + GL+ L+ G+ G + R         AE        +FGD       ++
Sbjct: 120  RIDLPLLKQ-HSAGLLALSAGAKGAVGRLLAQERPAEAEAAAAELAAIFGDDGQMPNFHL 178

Query: 185  NLQRHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
             LQRH   G +R  +  VV LA    LP+VA+ +  ++  ED  A D L  V     + +
Sbjct: 179  ELQRHGEPGEERLIQQTVV-LAQKLNLPIVASCDIHYMDPEDANARDALYCVGAVRTLYE 237

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            ++RPR++  +     +EM   F+DLPEALENT  IA RC+  L++  P+LP F       
Sbjct: 238  ENRPRLSDRYAFATPAEMAERFADLPEALENTRRIAMRCNLQLKLGTPMLPDFALPPGQT 297

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAK---GYHA---QDYRQRLDFELNVIARMKFSGY 356
            +    E E+R ++ AGLE RL++  + +     HA   Q Y  RL +EL +I +M F GY
Sbjct: 298  L----EGEMRTQSEAGLEERLSKYVLPRFPAAEHAELRQRYHDRLTYELGIINQMGFPGY 353

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV+DFI+W K ++IPVGPGRGSGAGS+ A++L+ITD+DP+R++LLFERFLNP+R+SMP
Sbjct: 354  FLIVSDFIKWGKDHHIPVGPGRGSGAGSLVAWSLSITDLDPIRYTLLFERFLNPERVSMP 413

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC DRR+EVI YVQ KYG +RVAQIITFG++QAKA +RDVGR L+ PY +VD++ 
Sbjct: 414  DFDVDFCMDRREEVIGYVQQKYGEDRVAQIITFGTMQAKAVIRDVGRVLEFPYGRVDKIA 473

Query: 477  KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            KL+PN     ++L +A+  + R R+    +  V  L+ ++  LEG  R   THAAG+VI 
Sbjct: 474  KLVPN--VLGITLKEALEQEPRLRDMMEDEEEVGHLINLALALEGSPRSCGTHAAGVVIS 531

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQ 591
            + PL+  VP+YRD RS +PVTQFNM  +EKAGL+KFDFLGLKTLT++  +L  +    AQ
Sbjct: 532  NGPLTDTVPLYRDPRSSMPVTQFNMGDVEKAGLVKFDFLGLKTLTVIDNTLKIVNARRAQ 591

Query: 592  RG------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             G      V +D++ I  +D   + LL    T G+FQLESSGMR+ L+ + PD  EDIIA
Sbjct: 592  EGERAEDRVPIDIAAIDIEDERAFRLLMDGRTKGVFQLESSGMREILKKLAPDTFEDIIA 651

Query: 646  LVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            LV+LYRPGP+ + +V  +  RK+G+  +    P ++P+L+ET GVI+YQEQVM+IAQ+L+
Sbjct: 652  LVALYRPGPLGSGMVDDFIARKHGRAVVEYPLPQLEPILRETYGVILYQEQVMKIAQVLA 711

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GYSL  AD+LRRAMGKK  EEM KQ+  F+ GA    I    A  IF+L+ KFA YGFNK
Sbjct: 712  GYSLGAADLLRRAMGKKKPEEMAKQRSIFMDGAKAQQIDPEKAGYIFDLMEKFAGYGFNK 771

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA+ISYQTAW+K HYPV F+AA+++ +++N +K+  F ++    ++Q++PP VN 
Sbjct: 772  SHSAAYALISYQTAWLKAHYPVAFMAATLSADINNTDKVVNFVRECHDMSVQVLPPDVNR 831

Query: 824  PCVDFKV----GD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKL 877
              V F V    GD + + + LAAIK VG      +++A  +  PF SL D C R +   L
Sbjct: 832  SAVIFSVQPGAGDEDAVRFGLAAIKNVGEAPMAALVKAREEGGPFASLLDLCQRTEGGNL 891

Query: 878  NRRVLESLVFAGALDCFGY-SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            NRR LE+L+ AGA D  G  +R  LL +L          +K++     N+F  E+   S+
Sbjct: 892  NRRTLENLIKAGACDGLGKGNRAALLSALPEALNRGTQHQKDQKLGFMNLFGDEEAENSE 951

Query: 937  KIT---LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-------KGYEES 986
                  L +        R E E+  LGFY S HPL  Y+  +   G+       + Y  +
Sbjct: 952  STANWKLPEVPDWPEEERLEREKEALGFYISSHPLRKYEAEMHDYGLMSLSELREKYGPT 1011

Query: 987  VATIRGNN----IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 GN+    +R   +VV ++  +T+KG R+ +VT  +   + E   FP
Sbjct: 1012 SQEPMGNDGRVSVRFTGVVVERKLHRTKKGDRMLFVTLEDMLGQMEGVVFP 1062


>gi|15642243|ref|NP_231876.1| DNA polymerase III subunit alpha [Vibrio cholerae O1 biovar El Tor
            str. N16961]
 gi|121586281|ref|ZP_01676071.1| DNA polymerase III, alpha subunit [Vibrio cholerae 2740-80]
 gi|121726522|ref|ZP_01679771.1| DNA polymerase III, alpha subunit [Vibrio cholerae V52]
 gi|147675187|ref|YP_001217760.1| DNA polymerase III subunit alpha [Vibrio cholerae O395]
 gi|153817071|ref|ZP_01969738.1| DNA polymerase III, alpha subunit [Vibrio cholerae NCTC 8457]
 gi|153820865|ref|ZP_01973532.1| DNA polymerase III, alpha subunit [Vibrio cholerae B33]
 gi|153825312|ref|ZP_01977979.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-2]
 gi|227082369|ref|YP_002810920.1| DNA polymerase III, alpha subunit [Vibrio cholerae M66-2]
 gi|254286447|ref|ZP_04961404.1| DNA polymerase III, alpha subunit [Vibrio cholerae AM-19226]
 gi|254849375|ref|ZP_05238725.1| DNA polymerase III subunit alpha [Vibrio cholerae MO10]
 gi|9656805|gb|AAF95389.1| DNA polymerase III, alpha subunit [Vibrio cholerae O1 biovar El Tor
            str. N16961]
 gi|121549547|gb|EAX59573.1| DNA polymerase III, alpha subunit [Vibrio cholerae 2740-80]
 gi|121630975|gb|EAX63354.1| DNA polymerase III, alpha subunit [Vibrio cholerae V52]
 gi|126512339|gb|EAZ74933.1| DNA polymerase III, alpha subunit [Vibrio cholerae NCTC 8457]
 gi|126521657|gb|EAZ78880.1| DNA polymerase III, alpha subunit [Vibrio cholerae B33]
 gi|146317070|gb|ABQ21609.1| DNA polymerase III, alpha subunit [Vibrio cholerae O395]
 gi|149740996|gb|EDM55065.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-2]
 gi|150423396|gb|EDN15340.1| DNA polymerase III, alpha subunit [Vibrio cholerae AM-19226]
 gi|227010257|gb|ACP06469.1| DNA polymerase III, alpha subunit [Vibrio cholerae M66-2]
 gi|227014141|gb|ACP10351.1| DNA polymerase III, alpha subunit [Vibrio cholerae O395]
 gi|254845080|gb|EET23494.1| DNA polymerase III subunit alpha [Vibrio cholerae MO10]
          Length = 1164

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1050 (41%), Positives = 628/1050 (59%), Gaps = 49/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G++
Sbjct: 9    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +  
Sbjct: 69   PIIGADF----------TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L R
Sbjct: 119  PVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 177

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 178  TGRADE--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 235

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 236  PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----G 290

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 291  MAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 350

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 351  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 410

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 411  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 470

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +    IA+ +  +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 471  DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 529

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V
Sbjct: 530  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 589

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 590  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 649

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 650  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 709

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 710  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 769

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 770  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 829

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA +    F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 830  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 889

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944
            AGALD  G  R  ++ S+D+  + A    +       ++F    G  +D   ++  +   
Sbjct: 890  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQ 945

Query: 945  VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            V      VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V+
Sbjct: 946  VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1005

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG +T  + +   E   +
Sbjct: 1006 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1035


>gi|153839483|ref|ZP_01992150.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AQ3810]
 gi|149746988|gb|EDM57976.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AQ3810]
          Length = 1159

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1052 (41%), Positives = 630/1052 (59%), Gaps = 53/1052 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL++HS +S+++G   +  I+ K+A    PA+A+TD  NL   ++F   A  +G++
Sbjct: 4    PKFVHLRIHSDFSMVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  MQ +      G+     +  + +L +   GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGA--DFKMQSD----EFGEE----LTQLTVLAADNAGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E+ +EGLI+L+G  +G I +A    + ++ E  +  +K+ F DR Y+ L R
Sbjct: 114  PVIDRAWLAEM-SEGLIVLSGAKNGDIGKALLKGNRKLVESCVEFYKQHFPDRFYLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       + LA  H+LP+VATN  +FLS + ++AH++ +A+     +    RP+
Sbjct: 173  TGRPDEETYLHFAIDLAEQHDLPVVATNEVVFLSADLFDAHEIRVAIHDGYTLEDPRRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       E
Sbjct: 233  NYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM-----E 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +F
Sbjct: 288  ETEFLVMKSREGLEERLEFLFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P DP
Sbjct: 408  MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +    E   AD  V  L+++ + LEG  R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFKAEPALPELYEADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V +
Sbjct: 527  PIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKPPVRI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP +D  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + 
Sbjct: 587  ESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  + ++PP +N+    F V 
Sbjct: 767  VSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVD 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +N  I Y + AIKGVG      I+EA +    F  L DFC+R+D K++N+RV+E L++AG
Sbjct: 827  ENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKLIYAG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947
            ALD  G  R  ++ SL++  K A        ++H    A  +G     +T     VEN  
Sbjct: 887  ALDRLGPHRAAMMASLNDAVKAA--------SQHHQAEAFGQGDMFGVLTDAPEEVENKY 938

Query: 948  -------SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                     V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +
Sbjct: 939  TQVPPWPEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGL 998

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V++ +   T++G+RIG +T  + +   E   F
Sbjct: 999  VIAARVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|258593588|emb|CBE69929.1| DNA polymerase III, alpha subunit [NC10 bacterium 'Dutch sediment']
          Length = 1146

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1033 (42%), Positives = 626/1033 (60%), Gaps = 26/1033 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA SL  ++ K    + PA+A+TD  NLF A++F   A   GI+PI
Sbjct: 6    FVHLHVHTQYSLLDGACSLETLVAKAKEYKMPALAMTDHGNLFGAIDFYTLAMKEGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ I      + +NQ  + +     I LL     GY+ L++LVS  YL +      R
Sbjct: 66   IGSEVYIAPGSRFEKSNQ-DSGYEGASHITLLAKDQVGYRNLMKLVSAGYL-EGFYYKPR 123

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            I      +   +GLI L+G  +    +A        A++ +  +    G +  ++ +Q H
Sbjct: 124  IDRELFAQ-HCQGLIALSGCLNSEAAKALLDGDEARAKETVGWYMDALGRENYFLEVQNH 182

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 +     V++LA   +LP+VATN+  + S+ED  AH+VL+ +     +  KDR R 
Sbjct: 183  GIAEQKTVTDGVLRLAKAFDLPIVATNDLHYPSKEDARAHEVLLCIQTGKTIQDKDRWRF 242

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            + D  Y K+ +EM  IF++LPEA+ NT+ +A RC+  LQ     LPR+   E   +    
Sbjct: 243  STDQFYFKSAAEMKQIFAELPEAVRNTITVAERCNLQLQFGQLRLPRYQVPEGQTL---- 298

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+ L + A  GL++R     +       +   RL +EL+VI +  FSGYFL+V DFI++A
Sbjct: 299  ESYLAHLAWEGLKIRYPDANV-------EVEARLKYELDVIQKTGFSGYFLVVWDFIKFA 351

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K   I VGPGRGS A S+ AY L IT+IDPLR+ L+FERFLNP+R+SMPD DIDF  DRR
Sbjct: 352  KDRGISVGPGRGSAAASLVAYCLNITNIDPLRYGLIFERFLNPERISMPDMDIDFSDDRR 411

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV  KYG + VAQIITFG++ AKA +RDVGR L MPY++VD++ KL+PN     +
Sbjct: 412  DEVIEYVTRKYGADNVAQIITFGTMGAKAVIRDVGRGLGMPYAEVDKIAKLVPNRIN--I 469

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            SL +AIA+     EA      V  L ++++ LEGL RHASTHAAG+VI   PL++ VP+Y
Sbjct: 470  SLDEAIAESPPLTEAVQNRTEVGELWQVAKCLEGLTRHASTHAAGVVISGDPLTEHVPLY 529

Query: 547  RDVRS-DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
            +D ++   P TQ+ MK IEK GL+K DFLGL+TLT++  +L+ +A  RG K+ +  IP D
Sbjct: 530  KDPKAGSKPTTQYAMKAIEKIGLLKVDFLGLRTLTVIANTLELIASGRGDKITIEKIPLD 589

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D   + LL+   T G+FQLESSGMR  +  ++P+ +ED+IALV+LYRPGP+  I  + NR
Sbjct: 590  DPAVFSLLSEARTFGVFQLESSGMRDLMRRLKPERLEDVIALVALYRPGPMVMIDDFINR 649

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            KNGK KI   HPL++ +LKET G+++YQEQVM+IA  L+G+S+ EADVLR+AMGKK  E 
Sbjct: 650  KNGKVKIRYDHPLMETILKETYGIMVYQEQVMRIASDLAGFSMGEADVLRKAMGKKDPEM 709

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MD+Q+++F+ GA   G+    A  IF+ +A FA Y FNK HA +YA+++YQTA++K HYP
Sbjct: 710  MDQQRKKFVDGAKVKGVQARTAEKIFDKMAPFAGYAFNKPHATSYALLAYQTAYLKAHYP 769

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEF+AA +T EM + + I K+  + +Q  I ++PP VN     F V   +I + L AIK 
Sbjct: 770  VEFMAALLTSEMADTDGIVKYIDECKQMGITVLPPDVNESESRFTVVGEQIRFGLVAIKN 829

Query: 845  VGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG T  + I+    DK PF SL DFC RVD +  N+RV+ESL+  GA D  G +R QL+ 
Sbjct: 830  VGETAIQSILATRRDKGPFRSLFDFCERVDLRLTNKRVIESLIKCGAFDSLGAARAQLIA 889

Query: 904  SLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKI-TLEKFSVENSSVRFENEQRVLG 960
              D   +     ++ R++   ++       G  S +   L      + + R   E+  LG
Sbjct: 890  VADKAMEAGAGTQRERSHGQGSLLDVLEATGGLSQQAEALPAIPEWSPTQRLAAEKETLG 949

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY +GHPL  Y+ ++ K+G    +   A      + L A+V + ++  T+ G R+ +VTF
Sbjct: 950  FYVTGHPLADYRDVIAKVGAVTTDRLAACQDKETVTLCAIVSAVKEITTKSGDRMAFVTF 1009

Query: 1021 SEPAKEYEANFFP 1033
             + A   EA  FP
Sbjct: 1010 EDMAGTVEAVAFP 1022


>gi|183179456|ref|ZP_02957667.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-3]
 gi|183012867|gb|EDT88167.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-3]
          Length = 1164

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1050 (41%), Positives = 628/1050 (59%), Gaps = 49/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G++
Sbjct: 9    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +  
Sbjct: 69   PIIGADF----------TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L R
Sbjct: 119  PVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 177

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 178  TGRADE--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 235

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 236  PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----G 290

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 291  MAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 350

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 351  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 410

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 411  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 470

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +    IA+ +  +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 471  DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 529

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V
Sbjct: 530  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 589

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 590  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 649

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 650  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 709

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 710  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 769

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 770  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 829

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA +    F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 830  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 889

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944
            AGALD  G  R  ++ S+D+  + A    +       ++F    G  +D   ++  +   
Sbjct: 890  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQ 945

Query: 945  VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            V      VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V+
Sbjct: 946  VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1005

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG +T  + +   E   +
Sbjct: 1006 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1035


>gi|260902378|ref|ZP_05910773.1| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus AQ4037]
 gi|308110181|gb|EFO47721.1| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus AQ4037]
 gi|328474386|gb|EGF45191.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus 10329]
          Length = 1159

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1056 (41%), Positives = 632/1056 (59%), Gaps = 61/1056 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL++HS +S+++G   +  I+ K+A    PA+A+TD  NL   ++F   A  +G++
Sbjct: 4    PKFVHLRIHSDFSMVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  MQ +      G+     +  + +L +   GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGA--DFKMQSD----EFGEE----LTQLTVLAADNAGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E+ +EGLI+L+G  +G I +A    + ++ E  +  +K+ F DR Y+ L R
Sbjct: 114  PVIDRAWLAEM-SEGLIVLSGAKNGDIGKALLKGNRKLVESCVEFYKQHFPDRFYLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       + LA  H+LP+VATN  +FLS + ++AH++ +A+     +    RP+
Sbjct: 173  TGRPDEETYLHFAIDLAEQHDLPVVATNEVVFLSADLFDAHEIRVAIHDGYTLEDPRRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       E
Sbjct: 233  NYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM-----E 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +F
Sbjct: 288  ETEFLVMKSREGLEERLEFLFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P DP
Sbjct: 408  MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +    E   AD  V  L+++ + LEG  R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFKAEPALPELYEADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V +
Sbjct: 527  PIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKPPVRI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP +D  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + 
Sbjct: 587  ESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +V N  +RK+G+E I          S+  ++DP    T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 647  MVDNFIDRKHGREAISYPDEKWQHESLKEILDP----TYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  + ++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYR 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +N  I Y + AIKGVG      I+EA +    F  L DFC+R+D K++N+RV+E L
Sbjct: 823  FNVDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            ++AGALD  G  R  ++ SL++  K A        ++H    A  +G     +T     V
Sbjct: 883  IYAGALDRLGPHRAAMMASLNDAVKAA--------SQHHQAEAFGQGDMFGVLTDAPEEV 934

Query: 946  EN---------SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            EN           V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ 
Sbjct: 935  ENKYTQVPPWPEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLKDATPTRRDQSVT 994

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +A +V++ +   T++G+RIG +T  + +   E   F
Sbjct: 995  VAGLVIAARVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|94263380|ref|ZP_01287194.1| DNA polymerase III, alpha subunit [delta proteobacterium MLMS-1]
 gi|93456216|gb|EAT06350.1| DNA polymerase III, alpha subunit [delta proteobacterium MLMS-1]
          Length = 1174

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1036 (42%), Positives = 634/1036 (61%), Gaps = 21/1036 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YS+L+GA+ L+ +  K       A+AITD   +F ALEF  KA  AGI+PI
Sbjct: 4    FVHLHVHTQYSMLDGAIRLDRLFAKCREYGMEAVAITDHGAMFGALEFYVKAKKAGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC+  I    + +     K+       ++LL     GYQ L++L + +  L+      R
Sbjct: 64   IGCEFYI--APDSRRDKSAKSAGAAAHHLMLLAMDQTGYQNLMKLAT-IAQLEGFHYKPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L  L +   EGLI +T    G +           A        +LF  RLY+ +Q ++
Sbjct: 121  IDLEVLAD-HREGLIAMTACLHGKVPSLLVKGDKAGARAEAKRLHELFPGRLYLEMQENQ 179

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              ++   ++ + +LA   ELPLVATN+  +L  E+ +AH+VL+ +     +  +DR R  
Sbjct: 180  IPEQTTVNEGLKELAAELELPLVATNDCHYLDREEAKAHEVLLCIQTGKTMDSQDRFRFA 239

Query: 250  PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D  + K+ +EM + F+  P+AL  TVEIA+RC+  L + +   P F     D +    E
Sbjct: 240  TDELFFKSPAEMKAAFAHSPQALAATVEIAQRCNLELDLESHHFPDFPVPTGDTLASLFE 299

Query: 309  NELRNKAVAGL-EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             E R      L E+R  QG        + YRQRL+ E++VI +M F GYFLIVADFI WA
Sbjct: 300  REARAGLAQRLTEMRDKQGLTVGAELEEQYRQRLEHEIDVINQMGFPGYFLIVADFINWA 359

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K   IPVGPGRGSGAGS+ AYA+ ITD+DP+   L+FERFLN +R SMPDFD+DFCQ+RR
Sbjct: 360  KDQQIPVGPGRGSGAGSLVAYAMRITDVDPIPHGLIFERFLNIERKSMPDFDVDFCQERR 419

Query: 428  DEVIRYVQNKYGHE-RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
             EVI YVQ+KYG +  V QI+T+GS++AKA +RDVGRAL M + + DR+ KLIP D  + 
Sbjct: 420  GEVIDYVQHKYGGQSHVVQIVTYGSMKAKAVVRDVGRALGMSFGEADRIAKLIP-DELNI 478

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               +AI  + +F+E    +P V  LL +++ LEGL RH S HAAG+VI  RP+ + +P+ 
Sbjct: 479  TLDKAIDKEPKFKELMKREPQVAELLNVAKVLEGLNRHTSIHAAGVVISPRPMVEYLPLC 538

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
            +  + ++ +TQ++MK  E  GLIKFDFLGLKTLT++ ++   + A    +VD++ IP DD
Sbjct: 539  KGPKGEV-LTQYDMKHTEMTGLIKFDFLGLKTLTVIDRACKLIKADLDHEVDIAAIPMDD 597

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
             +T+ LL     LG+FQLESSGMR  L  M+P+   D+IALV+LYRPGP+++ +V  + N
Sbjct: 598  AKTFDLLCKGDALGVFQLESSGMRSLLMKMKPEQFSDLIALVALYRPGPLESGMVEDFVN 657

Query: 664  RKNGKEKIVSIHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             K+G+  +V+ +PL  ++P+LKET GVI+YQEQVM+IA +L+GYSL +AD LRRAMGKKI
Sbjct: 658  TKHGR--MVAKYPLAQLEPILKETYGVIVYQEQVMKIANVLAGYSLGDADNLRRAMGKKI 715

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E M+ +K +F++G + NGI    A  IF+L+AKFA YGFNKSH+AAYA+I+YQTAW+K 
Sbjct: 716  PEVMEAEKGKFMAGCADNGIDPKKAEYIFDLVAKFAGYGFNKSHSAAYALIAYQTAWLKA 775

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP +F+AA ++ +M N +K+ ++  + R+  I+++PP +N    DF V D+RI + LAA
Sbjct: 776  HYPSQFMAALLSCDMGNTDKVVRYINECREHEIEVLPPDINESFRDFTVIDDRIRFGLAA 835

Query: 842  IKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +K VG      I+E    D P+ SL DFC RVD +K+NRRV+ESL+ AGA D  G  R Q
Sbjct: 836  VKNVGGAALDSIIEVRETDGPYQSLSDFCGRVDGRKVNRRVIESLIKAGAFDSLGAKRAQ 895

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVENSSVRFENEQR 957
            L   LD     AQ  +++R +   ++FA    E+   +  I L + +  +   R   E+ 
Sbjct: 896  LFAILDQAMDQAQATQRDRQSGQISLFAAMPAEQAAQAQNIELPEIAEWDEKQRLLLEKE 955

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             +GFY +GHPLD Y+  L  +      +         +R+  ++   +  +++KG  + +
Sbjct: 956  TVGFYLTGHPLDKYRRELAAVVDTDLHDLADWNEQQPVRVGGLIRHCKPHRSKKGDAMAF 1015

Query: 1018 VTFSEPAKEYEANFFP 1033
            +T  +     E   FP
Sbjct: 1016 LTLEDTLASAEVVIFP 1031


>gi|229524247|ref|ZP_04413652.1| DNA polymerase III alpha subunit [Vibrio cholerae bv. albensis VL426]
 gi|229337828|gb|EEO02845.1| DNA polymerase III alpha subunit [Vibrio cholerae bv. albensis VL426]
          Length = 1159

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1050 (41%), Positives = 628/1050 (59%), Gaps = 49/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G++
Sbjct: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGADF----------TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L R
Sbjct: 114  PVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 173  TGRADE--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 231  PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 287  -AIEDFLVMKSREGLEERLEFLFPDPDVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +    IA+ +  +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA +    F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944
            AGALD  G  R  ++ S+D+  + A    +       ++F    G  +D   ++  +   
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQ 940

Query: 945  VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            V      VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V+
Sbjct: 941  VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1000

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG +T  + +   E   +
Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|312173372|emb|CBX81626.1| DNA polymerase III alpha subunit [Erwinia amylovora ATCC BAA-2158]
          Length = 1160

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1052 (41%), Positives = 624/1052 (59%), Gaps = 52/1052 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G    + ++   A+   PAI ITD  NL   ++F   A   G++
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTSPLVKYAASMGMPAIGITDFTNLCGLVKFYGTAHGQGMK 63

Query: 69   PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PIIG   ++    M D L               I +L +  EGYQ L  L+SR Y    G
Sbjct: 64   PIIGADFNVSSEAMGDELT-------------QITVLAADNEGYQNLTLLISRAYQRGYG 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   WL E   +GLI+L+GG  G + +     +     + L  +++ F DR Y+ 
Sbjct: 111  PAGPTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNHTQVRECLSFYQQHFPDRYYLE 169

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R  R  +       V+LA    +P+VATN   FL+E D++AH++ +A+     +    
Sbjct: 170  LIRTGRPDEEAYLHAAVELAVAQGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDPK 229

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RPR  +P  YL++  EM  +FSD+PEALEN+VEIARRC+  +++    LP+F   E    
Sbjct: 230  RPRHYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGEYFLPQFPTGEM--- 286

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                E+ L  ++  GLE RL         +     DY QRLD ELNVI +M F GYFLIV
Sbjct: 287  --TTEDFLVVESKKGLEERLEFLFPDEKVRAERRADYDQRLDIELNVINQMGFPGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 345  MEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P
Sbjct: 405  DFCMEKRDLVIEHVAEMYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 465  PDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQIT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D   D PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +  K     
Sbjct: 524  DFSPLYCDENGDHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEAP 583

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+
Sbjct: 584  IDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPL 643

Query: 656  DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL 
Sbjct: 644  QSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLG 703

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK   EM +Q+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 704  GADMLRRAMGKKNPVEMARQRGGFEDGAKARGIDGELAIKIFDLVEKFAGYGFNKSHSAA 763

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F
Sbjct: 764  YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECLRMGLKVLPPDINSGLYQF 823

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886
             V D   I Y + AIKGVG      I+EA  +   F  L D C+R D+KK+NRR+LE L+
Sbjct: 824  HVNDEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKLI 883

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             +GA D  G  R  L+ +L +  K A    K       ++F    G  ++     + S  
Sbjct: 884  MSGAFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMF----GVLAEAPEQVEQSYS 939

Query: 947  N-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAM 1000
            +       ++ + E+  LG Y +GHP++ Y K I R +G +  ++   T RG     A +
Sbjct: 940  DVKPWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGL 999

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 1000 VVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|229528752|ref|ZP_04418142.1| DNA polymerase III alpha subunit [Vibrio cholerae 12129(1)]
 gi|229332526|gb|EEN98012.1| DNA polymerase III alpha subunit [Vibrio cholerae 12129(1)]
          Length = 1159

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1050 (41%), Positives = 628/1050 (59%), Gaps = 49/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G++
Sbjct: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGADF----------TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L R
Sbjct: 114  PVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 173  TGRADE--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 231  PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 287  -AIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +    IA+ +  +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNIGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA +    F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944
            AGALD  G  R  ++ S+D+  + A    +       ++F    G  +D   ++  +   
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQ 940

Query: 945  VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            V      VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V+
Sbjct: 941  VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1000

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG +T  + +   E   +
Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|229522191|ref|ZP_04411608.1| DNA polymerase III alpha subunit [Vibrio cholerae TM 11079-80]
 gi|229341116|gb|EEO06121.1| DNA polymerase III alpha subunit [Vibrio cholerae TM 11079-80]
          Length = 1159

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1050 (41%), Positives = 628/1050 (59%), Gaps = 49/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G++
Sbjct: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGADF----------TLQSEEFGDDLTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L R
Sbjct: 114  PVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 173  TGRADE--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 231  PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 287  -AIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +    IA+ +  +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA +    F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944
            AGALD  G  R  ++ S+D+  + A    +       ++F    G  +D   ++  +   
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQ 940

Query: 945  VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            V      VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V+
Sbjct: 941  VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1000

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG +T  + +   E   +
Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|251790730|ref|YP_003005451.1| DNA polymerase III subunit alpha [Dickeya zeae Ech1591]
 gi|247539351|gb|ACT07972.1| DNA polymerase III, alpha subunit [Dickeya zeae Ech1591]
          Length = 1160

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1051 (41%), Positives = 627/1051 (59%), Gaps = 50/1051 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G   +  ++ K AA   PA+AITD  NL   ++F   A +AGI+
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKIGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+SR Y    G   
Sbjct: 64   PIIGADFYL----------QSEELGDELAHLTVLAMNNEGYQNLTLLISRAYQRGYGADG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E    GL++L+GG  G I +     +  + E+ +  +++ F  R Y+ L R
Sbjct: 114  PTIDRAWLVE-HQAGLLLLSGGRHGDIGKFLLRGNQALVEQCVAFYQQHFPQRFYLELTR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V LA  H LP++ATN   F+S++D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAAVTLATAHGLPVIATNEVCFISQDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEDEMCELFADIPEALINTVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L   A  GLE RLA     +   AQ   +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVMCAKKGLEERLAFLFPDEDVRAQRRPEYDERLDIELGVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     VD+
Sbjct: 527  PLYCDPEGHHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARREKQGLEPVDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD  ++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKNSFGMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIQWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA + G+   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFKEGAERMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +KI     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA  +   F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRDLFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A D  G  R  L+ SL +  K A    K       ++F    G  ++  T E+     S+
Sbjct: 887  AFDRLGPHRAALMNSLADAMKSADQHAKAEAIGQADMF----GVLAE--TPEQVEQSYST 940

Query: 950  VR-------FENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            V         + E+  LG Y +GHP++ Y K I R  G    ++   T RG       +V
Sbjct: 941  VPPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLV 1000

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++ +   T++G+RIG  T  + +   E   F
Sbjct: 1001 LAARVMVTKRGNRIGVCTLDDRSGRLEVMLF 1031


>gi|28899077|ref|NP_798682.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus RIMD
            2210633]
 gi|260876841|ref|ZP_05889196.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AN-5034]
 gi|260897273|ref|ZP_05905769.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus Peru-466]
 gi|308125447|ref|ZP_05775347.2| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus K5030]
 gi|28807301|dbj|BAC60566.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus RIMD
            2210633]
 gi|308085355|gb|EFO35050.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus Peru-466]
 gi|308091396|gb|EFO41091.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AN-5034]
 gi|308113977|gb|EFO51517.1| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus K5030]
          Length = 1159

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1052 (41%), Positives = 630/1052 (59%), Gaps = 53/1052 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL++HS +S+++G   +  I+ K+A    PA+A+TD  NL   ++F   A  +G++
Sbjct: 4    PKFVHLRIHSDFSMVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  MQ +      G+     +  + +L +   GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGA--DFKMQSD----EFGEE----LTQLTVLAADNAGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E+ +EGLI+L+G  +G I +A    + ++ E  +  +K+ F DR Y+ L R
Sbjct: 114  PVIDRAWLAEM-SEGLIVLSGAKNGDIGKALLKGNRKLVESCVEFYKQHFQDRFYLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       + LA  H+LP+VATN  +FLS + ++AH++ +A+     +    RP+
Sbjct: 173  TGRPDEETYLHFAIDLAEQHDLPVVATNEVVFLSADLFDAHEIRVAIHDGYTLEDPRRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       E
Sbjct: 233  NYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM-----E 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +F
Sbjct: 288  ETEFLVMKSREGLEERLEFLFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P DP
Sbjct: 408  MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +    E   AD  V  L+++ + LEG  R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFKAEPALPELYEADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V +
Sbjct: 527  PIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKPPVRI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP +D  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + 
Sbjct: 587  ESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  + ++PP +N+    F V 
Sbjct: 767  VSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVD 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +N  I Y + AIKGVG      I+EA +    F  L DFC+R+D K++N+RV+E L++AG
Sbjct: 827  ENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKLIYAG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947
            ALD  G  R  ++ SL++  K A        ++H    A  +G     +T     VEN  
Sbjct: 887  ALDRLGPHRAAMMASLNDAVKAA--------SQHHQAEAFGQGDMFGVLTDAPEEVENKY 938

Query: 948  -------SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                     V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +
Sbjct: 939  TQVPPWPEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGL 998

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V++ +   T++G+RIG +T  + +   E   F
Sbjct: 999  VIAARVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|261338818|ref|ZP_05966676.1| hypothetical protein ENTCAN_05013 [Enterobacter cancerogenus ATCC
            35316]
 gi|288318641|gb|EFC57579.1| DNA polymerase III, alpha subunit [Enterobacter cancerogenus ATCC
            35316]
          Length = 1160

 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1052 (41%), Positives = 627/1052 (59%), Gaps = 52/1052 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F   A   G++
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTAHGVGMK 63

Query: 69   PIIGCQLDIDMQDNL---KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PI+G   D  +Q  L   +MT            I +L     GYQ L  L+S+ Y    G
Sbjct: 64   PIVGA--DFHVQSELLGDEMTQ-----------ISVLAMNNTGYQNLTLLISKAYQRGYG 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             Q   I   WL E+  EGL++++GG  G + +     +S + ++ +  +++ F DR Y+ 
Sbjct: 111  AQGPWIDRDWLAEL-NEGLLLISGGRMGDVGKCLLRGNSALVDQCVSFYEEHFPDRYYLE 169

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R  R  +       V LA    LP+VATN+  FL   D++AH++ +A+     +    
Sbjct: 170  LIRTGRADEENYLHAAVALAEQRGLPVVATNDVRFLESGDFDAHEIRVAIHDGFTLDDPK 229

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RPR  +   Y++   EM  +FSD+PEALEN+VEIA+RC+  +++    LP+F   +    
Sbjct: 230  RPRNYSSQQYMRTEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM--- 286

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                E+ L  K+  GLE RL         +      Y +RLD EL VI +M F GYFLIV
Sbjct: 287  --TTEDFLVVKSKEGLEERLEFLFPDEAERKEKRPPYDERLDIELQVINQMGFPGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 345  MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P
Sbjct: 405  DFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 465  PDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     
Sbjct: 524  DFAPLYCDEAGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLEP 583

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+
Sbjct: 584  IDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643

Query: 656  DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L 
Sbjct: 644  QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 704  GADMLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAA 763

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F
Sbjct: 764  YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886
             V ++  I Y + AIKGVG      I+EA  +   F  L D C+R D+KKLNRRVLE L+
Sbjct: 824  HVNEHGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLI 883

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             +GA D  G  R  L+ SL +  K A    K       ++F    G  +++    + S  
Sbjct: 884  MSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAEEPEQIEQSYS 939

Query: 947  N-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAM 1000
            N       V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A +
Sbjct: 940  NCQPWPEQVVLDGERETLGLYLTGHPINQYIKEIERYVGGNRLKDMHPTDRGKITTAAGL 999

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V++ +   T++G+RIG  T  + +   E   F
Sbjct: 1000 VIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|37680725|ref|NP_935334.1| DNA polymerase III subunit alpha [Vibrio vulnificus YJ016]
 gi|326423901|ref|NP_760750.2| DNA polymerase III subunit alpha [Vibrio vulnificus CMCP6]
 gi|37199474|dbj|BAC95305.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016]
 gi|319999277|gb|AAO10277.2| DNA polymerase III alpha subunit [Vibrio vulnificus CMCP6]
          Length = 1159

 Score =  784 bits (2024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1052 (41%), Positives = 634/1052 (60%), Gaps = 53/1052 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL++HS +S+++G   +  ++ ++AA   PA+A+TD  NL   ++F   A   GI+
Sbjct: 4    PKFVHLRIHSDFSMVDGINKVPALVKQVAALGMPAMALTDFTNLCGLVKFYGAAHGNGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  MQ + +  ++       +  + +L +   GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGA--DFKMQ-SPEFGDE-------LTQLTVLAADNTGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+ +EGLI+L+G  +G I +A    + ++ E  +  +++ F DR YV L R
Sbjct: 114  PVIDKEWLIEL-SEGLIILSGARNGEIGKALLKGNQKLVESCVDFYQQHFADRFYVELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       ++LA  ++LP+VATN  +F+ +E ++AH++ +A+     +    RP+
Sbjct: 173  TGRSDEETYLHFAIELAEQYDLPVVATNEVVFIGQELFDAHEIRVAIHDGYTLEDPRRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +        
Sbjct: 233  NYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLWEYFLPAFPTEGM-----A 287

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363
            E   L  K+  GLE RL          AQ   +Y +RL  EL+VI +M F GYFLIV +F
Sbjct: 288  ETEFLVMKSKEGLEERLEFLFPDPEIRAQRRPEYDERLQVELDVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P DP
Sbjct: 408  MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +    E   AD  V  L+++ + LEG  R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFKAEPALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V +
Sbjct: 527  PIYADAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKAPVRI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  ++ +L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + 
Sbjct: 587  ESIPLDDPASFRILQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +V N  +RK+G+E I          S+  ++DP    T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 647  MVDNFIDRKHGREAISYPDEKWQHESLKEILDP----TYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRATFEEGAVKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  + ++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYR 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +N  I Y + AIKGVG      I+EA +    F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDENGAIVYGIGAIKGVGEGPIDAILEARTKGGHFKDLFDFCARIDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEK 942
            ++AGALD  G  R  L+ SLD+  K A    +       ++F    G  +D   ++  + 
Sbjct: 883  IYAGALDRLGPHRAALMASLDDAVKAASQHHQAEAFGQADMF----GVLTDAPEEVEHKY 938

Query: 943  FSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
              VE     V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ LA +
Sbjct: 939  IQVEPWPEKVWLEGERETLGLYLTGHPVNAYLTELNKYTSCRLKDATPTRRDQSLTLAGL 998

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V++ +   T++G+RIG +T  + +   E   F
Sbjct: 999  VIAARVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|310764935|gb|ADP09885.1| DNA polymerase III subunit alpha [Erwinia sp. Ejp617]
          Length = 1160

 Score =  784 bits (2024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1052 (41%), Positives = 625/1052 (59%), Gaps = 52/1052 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G     +++   A+   PAI ITD  NL   ++F   A   G++
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTGSLVKYAASMGMPAIGITDFTNLCGLVKFYGTAHGQGMK 63

Query: 69   PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PIIG   ++    M D L               I +L +  +GYQ L  L+SR Y    G
Sbjct: 64   PIIGADFNVSSEAMGDELT-------------QITVLAADNDGYQNLTLLISRAYQRGYG 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   WL E   +GLI+L+GG  G + +     +     + L  +++ F DR Y+ 
Sbjct: 111  PAGPTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNPTQVNECLNFYQQYFPDRYYLE 169

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R  R  +       V+LA    +P+VATN   FL+E D++AH++ +A+     +    
Sbjct: 170  LIRTGRPDEETYLHAAVELAVARGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDPK 229

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RPR  +P  YL++  EM  +FSD+PEALEN+VEIARRC+  +++    LP+F   E    
Sbjct: 230  RPRHYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGEYFLPQFPTGEM--- 286

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                E+ L  K+  GLE RL         +     +Y +RLD ELNVI +M F GYFLIV
Sbjct: 287  --STEDFLVVKSKQGLEERLEFLFPDEKLRAVRRAEYDERLDIELNVINQMGFPGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 345  MEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P
Sbjct: 405  DFCMEKRDLVIEHVAEMYGRKAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 465  PDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQIT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D   D PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +  K     
Sbjct: 524  DFAPLYCDENGDHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEAP 583

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+
Sbjct: 584  IDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPL 643

Query: 656  DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL 
Sbjct: 644  QSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLG 703

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 704  GADMLRRAMGKKNPVEMAKQRGGFEDGAKARGVDGELAIKIFDLVEKFAGYGFNKSHSAA 763

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F
Sbjct: 764  YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQF 823

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886
             V D+  I Y + AIKGVG      I+EA  +   F  L D C+R D+KK+NRR+LE L+
Sbjct: 824  HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKLI 883

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             +GA D  G  R  L+ +L +  K A    K       ++F    G  ++     + S  
Sbjct: 884  MSGAFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMF----GVLAEAPEQVEQSYS 939

Query: 947  N-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAM 1000
            +       ++ + E+  LG Y +GHP++ Y K I R +G +  ++   T RG     A +
Sbjct: 940  DVKPWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGL 999

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 1000 VVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|259907557|ref|YP_002647913.1| DNA polymerase III subunit alpha [Erwinia pyrifoliae Ep1/96]
 gi|224963179|emb|CAX54663.1| DNA polymerase III subunit alpha [Erwinia pyrifoliae Ep1/96]
 gi|283477397|emb|CAY73313.1| DNA polymerase III alpha subunit [Erwinia pyrifoliae DSM 12163]
          Length = 1160

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1052 (41%), Positives = 624/1052 (59%), Gaps = 52/1052 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G     +++   A+   PAI ITD  NL   ++F   A   G++
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTGSLVKYAASMGMPAIGITDFTNLCGLVKFYGTAHGQGMK 63

Query: 69   PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PIIG   ++    M D L               I +L +  +GYQ L  L+SR Y    G
Sbjct: 64   PIIGADFNVSSEAMGDELT-------------QITVLAADNDGYQNLTLLISRAYQRGYG 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   WL E   +GLI+L+GG  G + +     +     + L  +++ F DR Y+ 
Sbjct: 111  PAGPTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNPTQVNECLNFYQQYFPDRYYLE 169

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R  R  +       V+LA    +P+VATN   FL+E D++AH++ +A+     +    
Sbjct: 170  LIRTGRPDEETYLHAAVELAVARGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDPK 229

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RPR  +P  YL++  EM  +FSD+PEALEN+VEIARRC+  +++    LP+F   E    
Sbjct: 230  RPRHYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGEYFLPQFPTGEM--- 286

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                E+ L  K+  GLE RL         +     +Y +RLD ELNVI +M F GYFLIV
Sbjct: 287  --STEDFLVVKSKQGLEERLEFLFPDEKLRAVRRAEYDERLDIELNVINQMGFPGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 345  MEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P
Sbjct: 405  DFCMEKRDLVIEHVAEMYGRKAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 465  PDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQIT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D   D PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +  K     
Sbjct: 524  DFAPLYCDENGDHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEAP 583

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+
Sbjct: 584  IDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPL 643

Query: 656  DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL 
Sbjct: 644  QSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLG 703

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 704  GADMLRRAMGKKNPVEMAKQRGGFEDGAKARGVDGELAIKIFDLVEKFAGYGFNKSHSAA 763

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F
Sbjct: 764  YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQF 823

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886
             V D   I Y + AIKGVG      I+EA  +   F  L D C+R D+KK+NRR+LE L+
Sbjct: 824  HVNDEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKLI 883

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             +GA D  G  R  L+ +L +  K A    K       ++F    G  ++     + S  
Sbjct: 884  MSGAFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMF----GVLAEAPEQVEQSYS 939

Query: 947  N-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAM 1000
            +       ++ + E+  LG Y +GHP++ Y K I R +G +  ++   T RG     A +
Sbjct: 940  DVKPWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGL 999

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 1000 VVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|153213783|ref|ZP_01948991.1| DNA polymerase III, alpha subunit [Vibrio cholerae 1587]
 gi|124115707|gb|EAY34527.1| DNA polymerase III, alpha subunit [Vibrio cholerae 1587]
          Length = 1164

 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1050 (41%), Positives = 628/1050 (59%), Gaps = 49/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G++
Sbjct: 9    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +  
Sbjct: 69   PIIGADF----------TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L R
Sbjct: 119  PVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 177

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 178  TGRADE--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 235

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 236  PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGM---- 291

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 292  -AIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 350

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 351  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 410

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 411  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 470

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +    IA+ +  +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 471  DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 529

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V
Sbjct: 530  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 589

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 590  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 649

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 650  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 709

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 710  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 769

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 770  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 829

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA +    F  L D C+R+D KK+N+RV+E L+ 
Sbjct: 830  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDLCARIDLKKVNKRVIEKLIL 889

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFS- 944
            AGALD  G  R  ++ S+D+  + A    +       ++F    G  +D  +   +K++ 
Sbjct: 890  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEDVEQKYTQ 945

Query: 945  --VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                   VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V+
Sbjct: 946  VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1005

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG +T  + +   E   +
Sbjct: 1006 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1035


>gi|188533052|ref|YP_001906849.1| DNA polymerase III subunit alpha [Erwinia tasmaniensis Et1/99]
 gi|188028094|emb|CAO95951.1| DNA polymerase III subunit alpha [Erwinia tasmaniensis Et1/99]
          Length = 1160

 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1052 (41%), Positives = 624/1052 (59%), Gaps = 52/1052 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G      ++   A    PAI ITD  NL   ++F   A   G++
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTAPLVKYAAKMGMPAIGITDFTNLCGLVKFYGTAHGQGMK 63

Query: 69   PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PIIG   +++   M D L               I +L +  +GYQ L  L+SR Y    G
Sbjct: 64   PIIGADFNVNSEAMGDELT-------------QITVLAADNQGYQNLTLLISRAYQRGYG 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   WL E   +GLI+L+GG  G + +     +     + L  +++ F DR Y+ 
Sbjct: 111  PAGPTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNHVQVNECLNFYQQHFPDRYYLE 169

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R  R  +       V+LA    +P+VATN   FL+E D++AH++ +A+     +    
Sbjct: 170  LIRTGRPDEETYLHAAVELAVAQSVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDPK 229

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RPR  +P  YL++  EM  +FSD+PEALEN+VEIARRC+  +++    LP+F   E    
Sbjct: 230  RPREYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGEYFLPQFPTGEM--- 286

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIV 360
                E+ L  K+  GLE RL      +   A+    Y +RLD ELNVI +M F GYFLIV
Sbjct: 287  --TTEDFLVVKSKQGLEERLTFLFPDEKIRAERRPAYDERLDIELNVINQMGFPGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 345  MEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P
Sbjct: 405  DFCMEKRDLVIEHVAEMYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 465  PDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQIT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     
Sbjct: 524  DFAPLYCDEHGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINARRAKSGEAP 583

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+
Sbjct: 584  IDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPL 643

Query: 656  DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL 
Sbjct: 644  QSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLG 703

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 704  GADMLRRAMGKKNPEEMAKQRGGFEDGAKARGIDGELAIKIFDLVEKFAGYGFNKSHSAA 763

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F
Sbjct: 764  YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQF 823

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886
             V D   I Y + AIKGVG      I+EA  +   F  L D C+R D+KK+NRR+LE L+
Sbjct: 824  HVNDEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKLI 883

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             +GA D  G  R  L+ +L +  K A    K       ++F    G  ++     + S  
Sbjct: 884  MSGAFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMF----GVLAEAPEQVEQSYS 939

Query: 947  N-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAM 1000
            +       ++ + E+  LG Y +GHP++ Y K I R +G +  ++   T RG     A +
Sbjct: 940  DVKPWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGL 999

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 1000 VVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|24373212|ref|NP_717255.1| DNA polymerase III subunit alpha [Shewanella oneidensis MR-1]
 gi|24347436|gb|AAN54699.1|AE015610_3 DNA polymerase III, alpha subunit [Shewanella oneidensis MR-1]
          Length = 1158

 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1050 (41%), Positives = 621/1050 (59%), Gaps = 50/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NNL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-------SIVLLVSTAEGYQRLIELVSRMYL 121
            PIIG   D  MQ               VP       ++ ++    EGYQ L +++S+ YL
Sbjct: 64   PIIGA--DFWMQ---------------VPGFEDEFCAVTIIAMDNEGYQNLTQIISQAYL 106

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
              Q +  V I   WL      G+++L+GG  G I +A    ++   E     +++ F  R
Sbjct: 107  RGQVQGRVVIDQEWLITY-NPGILLLSGGKEGDIGKALLKGNNTQVESLCEFYQQHFEGR 165

Query: 182  LYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ L R    D  R   + V +A    +P+VATN  +FL  ED+EAH++ +A+     +
Sbjct: 166  YFLELLRTGRPDEERYLHMAVGVAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTL 225

Query: 241  SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +   RP+  +   YL++  EM  +F+D+P AL NTVEIA+RC+  ++++   LP F   +
Sbjct: 226  ADPRRPKKYSEQQYLRSEDEMCELFADIPAALANTVEIAKRCNVTIRLNEYFLPNFPTGD 285

Query: 300  CDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                    E+ L + +  GLE RLA        +     +Y +RLD EL VI +M F GY
Sbjct: 286  M-----SIEDFLVDCSKKGLEERLAFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGY 340

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMP
Sbjct: 341  FLIVMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ 
Sbjct: 401  DFDVDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 460

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP +P   ++ +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI  
Sbjct: 461  KLIPPEPGMTLA-KAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAP 519

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
              ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +  VK 
Sbjct: 520  TKITDFSPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKN 579

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                + +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+R
Sbjct: 580  GRSPIRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639

Query: 652  PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PGP+ + +V N   RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSG
Sbjct: 640  PGPLQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSG 699

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            Y+L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKS
Sbjct: 700  YTLGGADMLRRAMGKKKPEEMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKS 759

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + I+PP VN  
Sbjct: 760  HSAAYALVSYQTLWLKTHFPPQFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKG 819

Query: 825  CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
               F V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E
Sbjct: 820  LFKFTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFTDLFDFCARIDLKKLNKRVIE 879

Query: 884  SLVFAGALDCFGYSRMQLLQSL-DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
             L+ AGALD  G  R  ++ +L + I    Q  +     +H+            K    +
Sbjct: 880  KLICAGALDALGPHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVE 939

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             +     +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV
Sbjct: 940  CTPWPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVV 999

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++GS++G +T  + +   E   F
Sbjct: 1000 ATRVMLTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|304414199|ref|ZP_07395567.1| DNA polymerase III alpha subunit [Candidatus Regiella insecticola
            LSR1]
 gi|304283413|gb|EFL91809.1| DNA polymerase III alpha subunit [Candidatus Regiella insecticola
            LSR1]
          Length = 1160

 Score =  783 bits (2021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1046 (41%), Positives = 624/1046 (59%), Gaps = 40/1046 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G    + ++ K A+   PA+AITD  NL   ++F   A AAGI+
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTSALVKKAASLGMPALAITDFTNLCGLIKFYSSAQAAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q K     +  + +L    +GYQ L  L+S+ Y    G   
Sbjct: 64   PIIGADFYL----------QSKLLDDELAQLTILARNQQGYQNLTLLISKAYQRGYGASG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDRLYVNLQ 187
              I   WL    +EGLI+L+GG SG + + F    +Q      L F ++ F D  Y+ L 
Sbjct: 114  PLIDRDWLI-THSEGLILLSGGRSGDVGK-FMLRGNQTQMLECLAFYQQYFADNYYLELI 171

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R  +       + LA  H++P+VATN+  F+   D+EAH++ +A+     ++   RP
Sbjct: 172  RTGRPDEENYLRGAIALASQHDIPVVATNDVRFIDTSDFEAHEIRVAIHDGATLADTKRP 231

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  +P  +++N  EM ++FSD+PEAL N++EIA+RC+  +++    LP+F          
Sbjct: 232  KNYSPQQFMRNEQEMCALFSDIPEALTNSIEIAKRCNLSIRLGEYFLPQFPTGAM----- 286

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+    KA  GLE RLA        K      Y +RL+ E+ VI +M F+GYFLIV +
Sbjct: 287  STEDFFAEKAQLGLEERLAFLFPDVNTKKQRRAAYDERLNVEIKVINQMGFAGYFLIVME 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N IPVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFDIDF
Sbjct: 347  FIQWSKDNGIPVGPGRGSGAGSLVAYALKITDIDPLAFDLLFERFLNPERISMPDFDIDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C ++RD+VI +V N YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP D
Sbjct: 407  CMEKRDQVIEHVANIYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLIPLD 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++  
Sbjct: 467  VGMTLE-KAFAAEPQLAELYQADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK----VD 597
             P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  + AQ+  K    +D
Sbjct: 526  SPLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWTLVMINAQQASKGLPSID 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD +++ LL    T  +FQLES GM+  ++ ++PDC EDIIALV+L+RPGP+ +
Sbjct: 586  ITTIPLDDKKSFALLQRAETTAVFQLESKGMKDLIKRLKPDCFEDIIALVALFRPGPLQS 645

Query: 658  IVVYN--NRKNGKEK-----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N  +RK+G+E      I   H L+ P+L+ T G+I+YQEQVMQIAQ+LSGYSL  A
Sbjct: 646  GMVDNFIDRKHGREALSYPDIQWQHELLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK   EM KQ+  F +GA + GI   +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DMLRRAMGKKDPVEMAKQRSIFENGAKQQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+K HYP EF+A  MT +MDN +K+     +  +  ++++ P +N+    F V
Sbjct: 766  LVSYQTLWLKAHYPAEFMAGVMTADMDNTDKLVGMVDECIRMGLKVLLPDINSGSYHFNV 825

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D+  I Y + AIKGVG      I+ A  A   F  L D C+R ++KKLNRRVLE L+ +
Sbjct: 826  NDDGEIVYGIGAIKGVGEGPITAILNARQAGGHFKDLFDLCARTETKKLNRRVLEKLILS 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            GA D  G  R  L+ SL+   K A    K      +++F    G+    + +    +   
Sbjct: 886  GAFDRLGPHRASLMHSLETALKAADQHAKAEAIGQKDMFGVLTGSPEQVEHSYANIAPWQ 945

Query: 948  SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
              +  E E+  LG Y +GHP+  Y K + R  G    ++   T RG    +A +V++ + 
Sbjct: 946  EQIVLEGERETLGLYLTGHPITQYLKELERYSGGIRLKDLHVTERGKTTTVAGLVIAARV 1005

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG  T  + +   E   F
Sbjct: 1006 IVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|311087135|gb|ADP67215.1| DNA polymerase III alpha chain [Buchnera aphidicola str. JF99
            (Acyrthosiphon pisum)]
          Length = 1161

 Score =  783 bits (2021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1056 (41%), Positives = 642/1056 (60%), Gaps = 59/1056 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL VHS YS+++G     +++ K A+   PAIAITD NNL+  ++F   A   G++
Sbjct: 4    PKFIHLHVHSDYSMIDGLSKPEDLVKKAASLNMPAIAITDYNNLYGVIKFYNMAHKLGLK 63

Query: 69   PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG- 125
            PIIG  ++   D+ +N             +  + LL ST EGY+ LI L+SR Y   +G 
Sbjct: 64   PIIGITVNFFSDLINN------------QLTKLTLLASTQEGYKNLILLISRAY--QKGY 109

Query: 126  --KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                 V I   W  EI  +GLI+L+GG  G + +      S +    L  ++K F D  Y
Sbjct: 110  VHNNHVTIEKKWFSEI-NKGLILLSGGPQGELGKVLLNGQSSLISICLSFYQKYFPDSYY 168

Query: 184  VNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L R +R  +       V L+ +  +P+VATN+  FLS+ED++ H + +A+    ++  
Sbjct: 169  LELFRTNRDNEETYLHLAVDLSLSTGVPIVATNDVCFLSQEDFKIHKIRIAINEGEILQH 228

Query: 243  -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             K +   +   +LK   EM  +FSD+PEAL N+VEIA+RC+  +      LP+F   +  
Sbjct: 229  SKIQNNYSNQQFLKTTKEMSDLFSDIPEALINSVEIAKRCNVFIHSGKYFLPQFRTGKI- 287

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAI----AKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                  E  L  +A  G++ RL    +     K  ++Q Y  RLD EL VI +M F GYF
Sbjct: 288  ----SVEKYLIKEAYKGIKKRLNSRYLDIEKYKDIYSQ-YINRLDMELTVINKMGFPGYF 342

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV +FIQWAK NNIPVGPGRGSGAGS+ AYAL IT++DPL F+LLFERFLNP+R+SMPD
Sbjct: 343  LIVMEFIQWAKDNNIPVGPGRGSGAGSLVAYALNITEVDPLSFNLLFERFLNPERISMPD 402

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC ++RD+VI +V   YG   VAQIITFG+L AKA +RDVGR L  PY  +++L K
Sbjct: 403  FDIDFCMEKRDQVIDHVSEIYGKNAVAQIITFGTLTAKAVIRDVGRVLGYPYGFINKLSK 462

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+P DP   +  +A + +S        +  V  L++I++KLEG  R+   HA G+VI   
Sbjct: 463  LVPLDPGITLK-EAFSKESELFNLYKNNEDVKNLIDIAKKLEGTNRNIGKHAGGVVISPT 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQR 592
             ++   P+Y D + + PVTQF+   IE  GL+KFDFLGL+TLT++  +++ +       +
Sbjct: 522  KITDFCPLYCDEKGNNPVTQFDKNDIEYVGLVKFDFLGLRTLTIISYAVEMINTKLNLNK 581

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               ++++ IP DD + ++LL    T G+FQLES GM+  ++ +QPDC ED+IALV+L+RP
Sbjct: 582  KRTININSIPLDDAKCFNLLKNSETTGVFQLESYGMKDLIKRLQPDCFEDMIALVALFRP 641

Query: 653  GPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V N  NRK+G+E I        H L+ P+L+ T G+I+YQEQVM+IAQ+LSGY
Sbjct: 642  GPLQSGMVDNFINRKHGRENISYPDHKWQHILLKPILESTYGIILYQEQVMEIAQVLSGY 701

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAM KK  ++M +Q+  F  GAS NGI K +++ IF+LL KFA YGFNKSH
Sbjct: 702  TLGSADILRRAMSKKNLKDMSEQRAIFEEGASNNGIDKKLSIKIFDLLEKFAGYGFNKSH 761

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            + AYA++SYQT W+K+HYP EF+AA+MT ++DN EKI     ++    ++I+PP++N   
Sbjct: 762  SVAYALVSYQTLWLKSHYPAEFIAAAMTSDIDNTEKIVILINESLNMGVKIIPPNINLSK 821

Query: 826  VDFKVGD-NRIYYSLAAIKGVGTTTAR-HIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
             +F V D   I Y L AIKG+G  + +  I E   +K F  L D C R+DS+K+ RRVLE
Sbjct: 822  YEFYVNDQGDIVYGLGAIKGIGKNSVQVLIKEREENKFFHDLFDLCMRIDSQKITRRVLE 881

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEK 942
             L+ +G+ DCF  +R  LLQS+D+    ++   + ++ K +++F    G F +++  ++K
Sbjct: 882  KLIMSGSCDCFDKNRNYLLQSIDDAINASKESFRIKSFKQDSLF----GIFQNELNQVKK 937

Query: 943  FSVEN----SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIR 996
             ++ N       + +NE +VLGFY +GHP++ YK  L +  + G + S      R   I 
Sbjct: 938  NNLVNLVCPEKNKLQNEYQVLGFYLTGHPINQYKKEL-ECYVNGVKLSQLKFIKRNKKIL 996

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +A ++VS + K T+  +RI  +   +     E   F
Sbjct: 997  VAGIIVSIKIKITKNKNRIAILVLDDNTSRLEVVIF 1032


>gi|219681609|ref|YP_002467995.1| DNA polymerase III alpha chain [Buchnera aphidicola str. 5A
            (Acyrthosiphon pisum)]
 gi|257471295|ref|ZP_05635294.1| DNA polymerase III alpha chain [Buchnera aphidicola str. LSR1
            (Acyrthosiphon pisum)]
 gi|219624452|gb|ACL30607.1| DNA polymerase III alpha chain [Buchnera aphidicola str. 5A
            (Acyrthosiphon pisum)]
          Length = 1161

 Score =  783 bits (2021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1056 (41%), Positives = 645/1056 (61%), Gaps = 59/1056 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL VHS YS+++G     +++ K A+   PAIAITD NNL+  ++F   A   G++
Sbjct: 4    PKFIHLHVHSDYSMIDGLSKPEDLVKKAASLNMPAIAITDYNNLYGVIKFYNMAHKLGLK 63

Query: 69   PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG- 125
            PIIG  ++   D+ +N             +  + LL ST EGY+ LI L+SR Y   +G 
Sbjct: 64   PIIGITVNFFSDLINN------------QLTKLTLLASTQEGYKNLILLISRAY--QKGY 109

Query: 126  --KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                 V I   W  EI  +GLI+L+GG  G + +      S +    L  ++K F D  Y
Sbjct: 110  VHNNHVTIEKKWFSEI-NKGLILLSGGPQGELGKVLLNGQSSLISICLSFYQKYFPDSYY 168

Query: 184  VNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L R +R  +       V L+ +  +P+VATN+  FLS+ED++ H + +A+    ++  
Sbjct: 169  LELFRTNRDNEETYLHLAVDLSLSTGVPIVATNDVCFLSQEDFKIHKIRIAINEGEILQH 228

Query: 243  -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             K +   +   +LK   EM  +FSD+PEAL N+VEIA+RC+  +      LP+F   +  
Sbjct: 229  SKIQNNYSNQQFLKTTKEMSDLFSDIPEALINSVEIAKRCNVFIHSGKYFLPQFRTGKI- 287

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAI----AKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                  E  L  +A  G++ RL    +     K  ++Q Y  RLD EL VI +M F GYF
Sbjct: 288  ----SVEKYLIKEAYKGIKKRLNSRYLDIEKYKDIYSQ-YINRLDMELTVINKMGFPGYF 342

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV +FIQWAK NNIPVGPGRGSGAGS+ AYAL IT++DPL F+LLFERFLNP+R+SMPD
Sbjct: 343  LIVMEFIQWAKDNNIPVGPGRGSGAGSLVAYALNITEVDPLSFNLLFERFLNPERISMPD 402

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC ++RD+VI +V   YG   VAQIITFG+L AKA +RDVGR L  PY  +++L K
Sbjct: 403  FDIDFCMEKRDQVIDHVSEIYGKNAVAQIITFGTLTAKAVIRDVGRVLGYPYGFINKLSK 462

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+P DP   +  +A + +S        +  V  L++I++KLEG  R+   HA G+VI   
Sbjct: 463  LVPLDPGITLK-EAFSKESELFNLYKNNEDVKNLIDIAKKLEGTNRNIGKHAGGVVISPT 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQR 592
             ++   P+Y D + + PVTQF+   IE  GL+KFDFLGL+TLT++  +++ +       +
Sbjct: 522  KITDFCPLYCDEKGNNPVTQFDKNDIEYVGLVKFDFLGLRTLTIISYAVEMINTKLNLNK 581

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               ++++ IP DD + ++LL    T G+FQLES GM+  ++ +QPDC ED+IALV+L+RP
Sbjct: 582  KRTININSIPLDDAKCFNLLKNSETTGVFQLESYGMKDLIKRLQPDCFEDMIALVALFRP 641

Query: 653  GPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V N  NRK+G+E I        H L+ P+L+ T G+I+YQEQVM+IAQ+LSGY
Sbjct: 642  GPLQSGMVDNFINRKHGRENISYPDHKWQHILLKPILESTYGIILYQEQVMEIAQVLSGY 701

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAM KK  ++M +Q+  F  GAS NGI K +++ IF+LL KFA YGFNKSH
Sbjct: 702  TLGSADILRRAMSKKNLKDMSEQRAIFEEGASNNGIDKKLSIKIFDLLEKFAGYGFNKSH 761

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            + AYA++SYQT W+K+HYP EF+AA+MT ++DN EKI     ++    ++I+PP++N   
Sbjct: 762  SVAYALVSYQTLWLKSHYPAEFIAAAMTSDIDNTEKIVILINESLNMGVKIIPPNINLSK 821

Query: 826  VDFKVGD-NRIYYSLAAIKGVGTTTAR-HIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
             +F V D   I Y L AIKG+G  + +  I E   +K F  L D C R+DS+K+ RRVLE
Sbjct: 822  YEFYVNDQGDIVYGLGAIKGIGKNSVQVLIKEREENKFFHDLFDLCMRIDSQKITRRVLE 881

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEK 942
             L+ +G+ DCF  +R  LLQS+D+    ++   + ++ K +++F    G F +++  ++K
Sbjct: 882  KLIMSGSCDCFDKNRNYLLQSIDDAINASKESFRIKSFKQDSLF----GIFQNELNQVKK 937

Query: 943  FSVEN----SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGN-NIR 996
             ++ N       + +NE +VLGFY +GHP++ YK  L +  + G + S +  IR N  I 
Sbjct: 938  NNLVNLVCPEKNKLQNEYQVLGFYLTGHPINQYKKEL-ECYVNGVKLSQLKFIRRNKKIL 996

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +A ++VS + K T+  +RI  +   +     E   F
Sbjct: 997  VAGIIVSIKIKITKNKNRIAILVLDDNTSRLEVVIF 1032


>gi|325496116|gb|EGC93975.1| DNA polymerase III subunit alpha [Escherichia fergusonii ECD227]
          Length = 1150

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1046 (41%), Positives = 629/1046 (60%), Gaps = 54/1046 (5%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75
            +HS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   
Sbjct: 1    MHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA-- 58

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G     I   W
Sbjct: 59   DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 110

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDR 194
            L E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  + 
Sbjct: 111  LIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 169

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHY 253
                  V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y
Sbjct: 170  SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 229

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            +++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  
Sbjct: 230  MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVK 284

Query: 314  KAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N
Sbjct: 285  RAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDN 344

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+V
Sbjct: 345  GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 404

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +
Sbjct: 405  IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-K 463

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D  
Sbjct: 464  AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 523

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDD 605
               PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD
Sbjct: 524  GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
             +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +
Sbjct: 584  KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 643

Query: 664  RKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
            RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMG
Sbjct: 644  RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 703

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W
Sbjct: 704  KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 763

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYY 837
            +K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y
Sbjct: 764  LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVY 823

Query: 838  SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G 
Sbjct: 824  GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 883

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS-------- 948
             R  L+ SL +  K A    K       ++F    G  ++    E   +E S        
Sbjct: 884  HRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWP 935

Query: 949  -SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
              V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A +VV+ + 
Sbjct: 936  EQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARV 995

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG  T  + +   E   F
Sbjct: 996  MVTKRGNRIGICTLDDRSGRLEVMLF 1021


>gi|262044745|ref|ZP_06017792.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
            ATCC 13884]
 gi|259037895|gb|EEW39119.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
            ATCC 13884]
          Length = 1160

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1053 (41%), Positives = 627/1053 (59%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHVAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D  +Q +L               + +L +   GYQ L  L+SR Y    G   
Sbjct: 64   PIVGA--DFHVQCDLLGDE--------FTELTVLAANNTGYQNLTLLISRAYQRGYGALG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+GG  G +  +    +  + E+ +  +++ F DR ++ L R
Sbjct: 114  PWIDRDWLVE-HQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V LA    LP+VATN+  FL   D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEEAYLHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y QRLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVMKSKEGLEERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D +   PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEGPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA  +   F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|307129835|ref|YP_003881851.1| DNA polymerase III subunit alpha [Dickeya dadantii 3937]
 gi|306527364|gb|ADM97294.1| DNA polymerase III alpha subunit [Dickeya dadantii 3937]
          Length = 1160

 Score =  782 bits (2019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1051 (41%), Positives = 631/1051 (60%), Gaps = 50/1051 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+SR Y    G   
Sbjct: 64   PIIGADFYL----------QSEELGDELAHLTILAMNNEGYQNLTLLISRAYQRGYGADG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E    GL++L+GG  G I +     +  + E+ +  +++ F  R Y+ L R
Sbjct: 114  PTIDRAWLVE-HQAGLLLLSGGRHGDIGKFLLRGNQVLVEQSVAFYQQHFPQRFYLELVR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA  H LP+VATN+  F+S++D+EAH++ +A+     +    RP+
Sbjct: 173  TGRPDEESYLHAAVELATAHGLPVVATNDVCFISQDDFEAHEIRVAIHDGFTLDDPKRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F      D+  E
Sbjct: 233  NYSVQQYMRSEEEMCELFADIPEALINTVEIAKRCNVTIRLGEYFLPQF---PTGDMSTE 289

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363
            +   + +K   GLE RL      +   AQ   +Y +RL+ ELNVI +M F GYFLIV +F
Sbjct: 290  DYLVMCSKK--GLEERLTFLFPDEEVRAQRRPEYDERLEIELNVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDLVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     +D+
Sbjct: 527  PLYCDPEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKQELEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIEWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA   G+   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFKEGAETMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +KI     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA + D  F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNNDGYFRDLFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A D  G  R  L+ SL +  K A+   K       ++F    G  ++  T E+     S+
Sbjct: 887  AFDRLGPHRAALMNSLADAMKSAEQHAKAEAIGQADMF----GVLAE--TPEQVEQSYST 940

Query: 950  VR-------FENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            V         + E+  LG Y +GHP++ Y K I R  G    ++   T RG       +V
Sbjct: 941  VPPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLV 1000

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++ +   T++G+RIG  T  + +   E   F
Sbjct: 1001 LAARVMVTKRGNRIGVCTLDDRSGRLEVMLF 1031


>gi|152968778|ref|YP_001333887.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae MGH 78578]
 gi|238893180|ref|YP_002917914.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae NTUH-K2044]
 gi|150953627|gb|ABR75657.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae MGH 78578]
 gi|238545496|dbj|BAH61847.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae NTUH-K2044]
          Length = 1160

 Score =  782 bits (2019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1053 (41%), Positives = 627/1053 (59%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D  +Q +L               + +L +   GYQ L  L+SR Y    G   
Sbjct: 64   PIVGA--DFHVQCDLLGDE--------FTELTVLAANNTGYQNLTLLISRAYQRGYGALG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+GG  G +  +    +  + E+ +  +++ F DR ++ L R
Sbjct: 114  PWIDRDWLVE-HQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V LA    LP+VATN+  FL   D++AH++ +A+     +    RPR
Sbjct: 173  TGRQDEEAYLHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y QRLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVMKSKEGLEERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D +   PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527  PLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEGPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA  +   F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +E S 
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A 
Sbjct: 939  ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|254225765|ref|ZP_04919370.1| DNA polymerase III, alpha subunit [Vibrio cholerae V51]
 gi|125621671|gb|EAZ50000.1| DNA polymerase III, alpha subunit [Vibrio cholerae V51]
          Length = 1164

 Score =  782 bits (2019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1052 (41%), Positives = 627/1052 (59%), Gaps = 53/1052 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G++
Sbjct: 9    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +  
Sbjct: 69   PIIGADF----------TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E   EGLI+L+GG  G + RA    + Q  E+ +  ++  F D  Y+ L R
Sbjct: 119  PVIDKAWLVE-HAEGLIVLSGGKRGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 177

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 178  TGRADE--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 235

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 236  PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----G 290

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 291  MAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQIELDVINQMGFPGYFLIVM 350

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 351  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 410

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 411  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 470

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +    IA+ +  +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 471  DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 529

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V
Sbjct: 530  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 589

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 590  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 649

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 650  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 709

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 710  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 769

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 770  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 829

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA +    F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 830  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 889

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGALD  G  R  ++ S+D+  + A    +       ++F    G  +D    E+   + 
Sbjct: 890  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTD--APEEVEQKY 943

Query: 948  SSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
            + V       R E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +
Sbjct: 944  TQVPEWPEKARLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGL 1003

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V++ +   T++G+RIG +T  + +   E   +
Sbjct: 1004 VIAARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1035


>gi|254448006|ref|ZP_05061470.1| DNA polymerase III, alpha subunit [gamma proteobacterium HTCC5015]
 gi|198262432|gb|EDY86713.1| DNA polymerase III, alpha subunit [gamma proteobacterium HTCC5015]
          Length = 1175

 Score =  782 bits (2019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1056 (42%), Positives = 629/1056 (59%), Gaps = 62/1056 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL++H+ YSL++  + +  ++   A    PA+A+TD  NLF+ ++F   A AAGI
Sbjct: 2    SSSFVHLRLHTEYSLVDSVVRIKPLISTAAEQGMPALALTDQCNLFAMVKFFGAASAAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE--GYQRLIELVSRMYLLDQG 125
            + + G  L +  +D            P  PS VLL+   +  GY+ L ELVS+ Y   Q 
Sbjct: 62   KALFGADLLVRNED------------PKKPSTVLLLLAMDDVGYRNLTELVSQAYTEGQA 109

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I  +WL E  TEGLI L+GG  G I RA  FN  +     L  +K+ F +R Y+ 
Sbjct: 110  GGLPVIERTWL-EGRTEGLIALSGGPWGDIGRAIAFNHHEQIPPLLAFYKQHFPNRFYLE 168

Query: 186  LQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            LQR    G   Y E+  V LA  H+LP+VATN+  F+  +D+++H+V + +    ++   
Sbjct: 169  LQRTGREGEALYNET-AVSLAAEHQLPVVATNDVRFIHADDFDSHEVRVCIHEGRLLDDP 227

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R R  +P+ YL++  EMV +FSDLPEA+ENT+EIA+RC+    +    LP +   + + 
Sbjct: 228  RRSRHYSPEQYLRSPEEMVELFSDLPEAIENTLEIAKRCNVAPHMGEYFLPDYPVPDGET 287

Query: 303  IQKEEENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    ++  R ++  GLE R+ +     G        Q YR RL+ E+ VI  M F GYF
Sbjct: 288  I----DSFFRKQSQEGLEWRMEKLQRDTGTTWDEAKVQSYRDRLEREIGVILNMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIQWAKNNGVPVGPGRGSGAGSLVAYALKITDLDPIEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC + RD VI YV  KYG ++V+QIIT+GS+ AKA +RDVGR L   Y  VD + K
Sbjct: 404  FDVDFCMEGRDRVIDYVAQKYGRDQVSQIITYGSMAAKAVVRDVGRVLGHGYGFVDGIAK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            LIP +    +S QA+ +    ++    D  V  LL+++ KLEGL R+A  HA G+VI   
Sbjct: 464  LIPMEVGITLS-QALEESEELKQRYEEDEEVTNLLDMALKLEGLSRNAGKHAGGVVIAPS 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR----- 592
             L+   P+Y +      VTQF+   +E  GL+KFDFLGL+TLT++  +L  +  R     
Sbjct: 523  KLTDFTPLYCEEGGGGLVTQFDKDDVEAIGLVKFDFLGLRTLTIINWALKEINSRLEAAG 582

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D+  IP DD  T+ LL  + T  +FQLESSGM+  ++ +QPD  EDI+ALV+L+RP
Sbjct: 583  HPLLDIDAIPLDDAPTFDLLKAQQTTAVFQLESSGMKNLIKKLQPDSFEDIVALVALFRP 642

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+D+ +V  +  RK+G++++   HP      + P+L+ T G+I+YQEQVMQIAQ++ GY
Sbjct: 643  GPLDSGMVDDFIRRKHGQDEVSYPHPDYQYDGLKPVLEPTYGIILYQEQVMQIAQVMGGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL  AD+LRRAMGKK  EEM KQKE F+ G   NGI  ++A NIF+L+ KFA YGFNKSH
Sbjct: 703  SLGGADLLRRAMGKKKLEEMAKQKEVFLKGCGDNGIDLSLAENIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA++SYQTAW+K HYP  F+AA ++ + DN +K+    ++ R   + I+PP VN+  
Sbjct: 763  SAAYALVSYQTAWLKAHYPSAFMAAVLSADSDNTDKVVNLIEECRNMGLTILPPDVNSSA 822

Query: 826  VDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLE 883
              F + D++ I Y L A+KGVG      I E   A+  +  L DFC R+D +KLNRRV E
Sbjct: 823  YKFTMQDDKTIRYGLGALKGVGQGVIEAINEEREANGDYADLLDFCRRIDGRKLNRRVTE 882

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITL 940
            +L+  GALD  G +R  L+ +L +    A   +KN+     +IF    H     S  + L
Sbjct: 883  ALIRGGALDSIGPNRASLMAALGDALMAASQHQKNQATGQVDIFGALDHSNEMASVDVPL 942

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-------RGN 993
             K   E+  +R E +  VLG Y +GHP + +   L  +  K     V  +       RG+
Sbjct: 943  IKEWHEDDKLRAERD--VLGLYLTGHPFNRFARELSAITHKNLHSHVEAVEAQESASRGD 1000

Query: 994  NIR-------LAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            + R       +A +VV  Q K+   G+ +  VT  +
Sbjct: 1001 DFRARAISATVAGLVVDVQSKRFGNGNELLIVTLDD 1036


>gi|94267210|ref|ZP_01290812.1| DNA polymerase III, alpha subunit [delta proteobacterium MLMS-1]
 gi|93452086|gb|EAT02768.1| DNA polymerase III, alpha subunit [delta proteobacterium MLMS-1]
          Length = 1174

 Score =  782 bits (2019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1036 (41%), Positives = 634/1036 (61%), Gaps = 21/1036 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YS+L+GA+ L+ +  K       A+AITD   +F ALEF  KA  AGI+PI
Sbjct: 4    FVHLHVHTQYSMLDGAIRLDRLFAKCREYGMEAVAITDHGAMFGALEFYVKAKKAGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC+  I    + +     K+       ++LL     GYQ L++L + +  L+      R
Sbjct: 64   IGCEFYI--APDSRRDKSAKSAGAAAHHLMLLAMDQTGYQNLMKLAT-IAQLEGFHYKPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L  L     EGLI +T    G +           A        +LF  RLY+ +Q ++
Sbjct: 121  IDLEVLA-AHREGLIAMTACLHGKVPSLLVKGDKAGARAEAKRLHELFPGRLYLEMQENQ 179

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              ++   ++ + +LA   ELPLVATN+  +L  E+ +AH+VL+ +     ++ +DR R  
Sbjct: 180  IPEQTTVNEGLKELAAELELPLVATNDCHYLDREEAKAHEVLLCIQTGKTMAAQDRFRFA 239

Query: 250  PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D  + K+ +EM + F+  P+AL  T EIA+RC+  L + +   P F     D +    E
Sbjct: 240  TDELFFKSPAEMKAAFAHSPQALAATAEIAQRCNLELDLESHHFPDFPVPTGDTLASLFE 299

Query: 309  NELRNKAVAGL-EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             E R      L E+R  QG        + YRQRL+ E++VI +M F GYFLIVADFI WA
Sbjct: 300  REARAGLAQRLTEMRDKQGLTVGAELEEQYRQRLEHEIDVINQMGFPGYFLIVADFINWA 359

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K   IPVGPGRGSGAGS+ AYA+ ITD+DP+   L+FERFLN +R SMPDFD+DFCQ+RR
Sbjct: 360  KDQQIPVGPGRGSGAGSLVAYAMRITDVDPIPHGLIFERFLNIERKSMPDFDVDFCQERR 419

Query: 428  DEVIRYVQNKYGHE-RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
             EVI YVQ+KYG +  V QI+T+GS++AKA +RDVGRAL M + + DR+ KLIP++    
Sbjct: 420  GEVIDYVQHKYGGQSHVVQIVTYGSMKAKAVVRDVGRALGMSFGEADRIAKLIPDELNIT 479

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +AI  + +F+E    +P V  LL +++ LEGL RH S HAAG+VI  RP+ + +P+ 
Sbjct: 480  LD-KAIDKEPKFKELMKREPQVAELLNVAKVLEGLNRHTSIHAAGVVISPRPMVEYLPLC 538

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
            +  + ++ +TQ++MK  E  GLIKFDFLGLKTLT++ ++   + A    +VD++ IP DD
Sbjct: 539  KGPKGEV-LTQYDMKHTEMTGLIKFDFLGLKTLTVIDRACKLIKADLDHEVDIAAIPMDD 597

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
             +T+ LL     LG+FQLESSGMR  L  M+P+   D+IALV+LYRPGP+++ +V  + N
Sbjct: 598  AKTFDLLCKGDALGVFQLESSGMRSLLMKMKPEQFSDLIALVALYRPGPLESGMVEDFVN 657

Query: 664  RKNGKEKIVSIHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             K+G+  +V+ +PL  ++P+LKET GVI+YQEQVM+IA +L+GYSL +AD LRRAMGKKI
Sbjct: 658  TKHGR--MVAKYPLAQLEPILKETYGVIVYQEQVMKIANVLAGYSLGDADNLRRAMGKKI 715

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E M+ +K +F++G + NGI    A  IF+L+AKFA YGFNKSH+AAYA+I+YQTAW+K 
Sbjct: 716  PEVMEAEKGKFMAGCADNGIDPKKAEYIFDLVAKFAGYGFNKSHSAAYALIAYQTAWLKA 775

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP +F+AA ++ +M N +K+ ++  + R+  I+++PP +N    DF V D+RI + LAA
Sbjct: 776  HYPSQFMAALLSCDMGNTDKVVRYINECREHEIEVLPPDINESFRDFTVIDDRIRFGLAA 835

Query: 842  IKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +K VG      I+E    D P+ SL DFC RVD +K+NRRV+ESL+ AGA D  G  R Q
Sbjct: 836  VKNVGGAALDSIIEVRETDGPYQSLSDFCGRVDGRKVNRRVIESLIKAGAFDSLGAKRAQ 895

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVENSSVRFENEQR 957
            L   LD     AQ  +++R +   ++FA    E+   +  I L + +  +   R   E+ 
Sbjct: 896  LFAILDQAMDQAQATQRDRQSGQISLFAAMPAEQAAQAQNIELPEIAEWDEKQRLLLEKE 955

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             +GFY +GHPLD Y+  L  +      +         +R+  ++   +  +++KG  + +
Sbjct: 956  TVGFYLTGHPLDKYRRELSGVIDTDLHDLADWNEQQPVRVGGLIRHCKPHRSKKGDAMAF 1015

Query: 1018 VTFSEPAKEYEANFFP 1033
            +T  +     E   FP
Sbjct: 1016 LTLEDTLASAEVVIFP 1031


>gi|940886|gb|AAC44578.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae C6706]
          Length = 1159

 Score =  781 bits (2018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1050 (41%), Positives = 625/1050 (59%), Gaps = 49/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G++
Sbjct: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGADF----------TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L R
Sbjct: 114  PVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 173  TGRADE--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 231  PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFL+V 
Sbjct: 287  -AIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLVVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +    IA +   +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLEKAFIA-EPELKELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E I        H  +  +L+   G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPPYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA +    F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944
            AGALD  G  R  ++ S+D+  + A    +       ++F    G  +D   ++  +   
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQ 940

Query: 945  VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            V      VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++  A +V+
Sbjct: 941  VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTAAGLVI 1000

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG +T  + +   E   +
Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRLEVMLY 1030


>gi|127513548|ref|YP_001094745.1| DNA polymerase III subunit alpha [Shewanella loihica PV-4]
 gi|126638843|gb|ABO24486.1| DNA polymerase III, alpha subunit [Shewanella loihica PV-4]
          Length = 1157

 Score =  781 bits (2018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1054 (41%), Positives = 620/1054 (58%), Gaps = 58/1054 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G   +  IL K + DQ  A+A+TD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDFSMSDGLAKVKPILAKASEDQMAALALTDNTNLCGLVKFYGGCHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-------SIVLLVSTAEGYQRLIELVSRMYL 121
            PI+GC                   F  VP       S+ +L    EGY+ L  L+S  YL
Sbjct: 64   PIVGCDF-----------------FMLVPGFEDEFCSLTVLAMNNEGYKNLTLLISDAYL 106

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                K    I  +WL+   +EGLI+L+G   G + +A    +    +  +  ++  F DR
Sbjct: 107  RGHVKDRAVIDQAWLERY-SEGLILLSGAKDGDVGKALLKGNQGQVDSLVAFYQTHFPDR 165

Query: 182  LYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ L R    D  R   + V+LA   +LP+VATN  +F+  E +EAH++ +A++    +
Sbjct: 166  YYLELIRTGRPDEERYLHMAVELAGEKDLPVVATNQVVFIQPEQFEAHEIRVAISDGFTL 225

Query: 241  SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +   RPR  +   Y + + EM  +F D+PEAL+N+VEIA+RC+  +++    LP F   +
Sbjct: 226  ADPRRPRRYSEQQYFRIQDEMCELFDDIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGD 285

Query: 300  CDDIQKEEENELRNKAVAGLEVRL-------AQGAIAKGYHAQDYRQRLDFELNVIARMK 352
                    E+ L   +  GLE RL       AQ A  +G    +Y +RLD EL VI  M 
Sbjct: 286  L-----SIEDFLVEVSKKGLEERLEFLFPDEAQRAERRG----EYDERLDVELTVINNMG 336

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFLIV +FIQW K N IP+GPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R
Sbjct: 337  FPGYFLIVMEFIQWGKDNGIPIGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPER 396

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFD+DFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  V
Sbjct: 397  VSMPDFDVDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFV 456

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            DR+ K+IP +P   ++ +A   +    EA  AD  V  L+++ + LEG+ R+A  HA G+
Sbjct: 457  DRISKMIPAEPGMTLA-KAFEAEPALPEAYDADEEVKDLIDMCRVLEGVTRNAGKHAGGV 515

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF---- 588
            VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L      
Sbjct: 516  VIAPTVITDFAPLYCDAEGHNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPH 575

Query: 589  LAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            LA++G + V +  I  DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV
Sbjct: 576  LAKQGKEPVRIEAIVLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALV 635

Query: 648  SLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQ 700
            +L+RPGP+ + +V N   RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ
Sbjct: 636  ALFRPGPLQSGMVDNFIERKHGREEVSYPDQQWQHESLKPILEPTYGIILYQEQVMQIAQ 695

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +L+GY+L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YG
Sbjct: 696  VLAGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGELAMKIFDLVEKFAGYG 755

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSH+AAYA++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP 
Sbjct: 756  FNKSHSAAYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLLPPD 815

Query: 821  VNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            VN     F V D+  I Y + AIKGVG      I++A  D PF  L DFC+RVD KKLNR
Sbjct: 816  VNKGLFRFTVDDDLNIVYGIGAIKGVGEGPVESILKAREDGPFIDLFDFCARVDLKKLNR 875

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSL-DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            RV+E L+ AGALD  G  R  ++ +L + I+   Q  +     +H+           +K 
Sbjct: 876  RVIEKLICAGALDNLGPHRAAMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDNKQ 935

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
                 +     V  E E+  LG Y +GHP++ Y   L+       ++   T RG   + A
Sbjct: 936  QFVHCTPWPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTTKAA 995

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +VV+ +   T++GS++G VT  + +   E   F
Sbjct: 996  GLVVATRVMMTKRGSKMGLVTLDDKSARLEVMLF 1029


>gi|222056375|ref|YP_002538737.1| DNA polymerase III, alpha subunit [Geobacter sp. FRC-32]
 gi|221565664|gb|ACM21636.1| DNA polymerase III, alpha subunit [Geobacter sp. FRC-32]
          Length = 1156

 Score =  781 bits (2017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1028 (41%), Positives = 631/1028 (61%), Gaps = 23/1028 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL +H+ YSLL+GA+ L +++ K+   + PA+AITD  N+F A+EF  K    GI+
Sbjct: 4    PDFVHLHLHTQYSLLDGAIRLGDLIKKVKGYEMPAVAITDHGNMFGAIEFYTKCKDKGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQ 127
            PIIG ++ I         +       +   +VLL    +GY+ L  LVS  Y   +G   
Sbjct: 64   PIIGSEVYIAPGSRFSKESGNGHESTSSYHLVLLCQNLQGYRNLSWLVSAGY--KEGFYY 121

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              RI    L E  +EGLI L+    G +      N  + A      + +LF  R Y+ LQ
Sbjct: 122  KPRIDKEILAE-HSEGLIALSACLKGEVAYQCGRNRIEDAVATARWYSELFPGRYYIELQ 180

Query: 188  RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   ++     +++++A    LPLVATN+  +L+ ED +AH+VL+ +     ++  +  
Sbjct: 181  ENTLPEQDVANKRLLEVASELSLPLVATNDCHYLNREDAKAHEVLLCIQTGKTMNDPNHM 240

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---EKECDD 302
              + +  Y K+  EM + F   PEA+ NTV IA  C F L       P++I   +K  DD
Sbjct: 241  HFSAEEFYFKSPQEMAAAFHYAPEAIANTVRIAESCDFELDFKTYHFPQYIKPADKSLDD 300

Query: 303  IQKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            + +E+  E L+++ VA   VR A+         + Y  RL  EL+ I +M F GYFLIVA
Sbjct: 301  VLEEQAYEGLKDRLVA---VR-AKYPDLTADQEKGYYDRLRIELDCIKQMGFPGYFLIVA 356

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK + IPVGPGRGS AGS+ AY++ ITD+DP+ ++LLFERFLNP+R+SMPD D+D
Sbjct: 357  DFINWAKDHGIPVGPGRGSAAGSLVAYSIRITDLDPIPYNLLFERFLNPERISMPDIDVD 416

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVI+YV  KYG ++V QIITFG++ A+  LRDVGRAL M Y  VDR+ KL+P 
Sbjct: 417  FCQDRREEVIQYVTEKYGRDKVCQIITFGTMAARGVLRDVGRALDMSYGDVDRIAKLVPE 476

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 ++L+ A+  + +  E   ADP +  LL+++  LEGL RHASTHAAG+V+    L 
Sbjct: 477  --VLGITLEKALQQEPKLNELAEADPRIKELLDVALCLEGLARHASTHAAGVVVAPDVLE 534

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599
               P+Y+D ++    TQ++MK++EK GL+KFDFLGLK LT++  ++  + A +    D++
Sbjct: 535  AFCPVYKDQKNGSITTQYSMKYVEKIGLVKFDFLGLKNLTVIHNAVKLIRAGKNADFDIT 594

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            ++  DD ETY LL +  T G+FQLESSGM+  L  ++P C EDIIA+ +LYRPGP+ + +
Sbjct: 595  VLRDDDEETYKLLQSGNTTGVFQLESSGMQGLLVKLKPSCFEDIIAVCALYRPGPLGSGM 654

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            V  + +RK+G++K+V   P ++P+LK+T GVI+YQEQVMQI+++L+GYSL +AD+LRRAM
Sbjct: 655  VDDFIDRKHGRKKVVYDLPQLEPILKDTYGVIVYQEQVMQISRVLAGYSLGQADLLRRAM 714

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  E M K+K  F++GA K  I    A  IF+L+AKFA+YGFNKSH+AAYA+++YQTA
Sbjct: 715  GKKDPEVMAKEKIPFLAGAEKQNIDPKKAEAIFDLMAKFAEYGFNKSHSAAYALVAYQTA 774

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++KTHYPVEF+AA +T +M + +K+ K   D R   I+++PP +N   + F+V  N I +
Sbjct: 775  YLKTHYPVEFMAALLTEDMGSTDKVIKNISDCRDMGIEVLPPDINASDLSFRVLGNSIRF 834

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L A+K VG +    I+EA     F  + DF  RVD +K+N+RV+ESL+  GA D  G  
Sbjct: 835  GLGAVKNVGESAIEAILEARKTGSFADIFDFGERVDQRKVNKRVVESLIKCGAFDSTGAK 894

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE---KGTFSDKITLEKFSVENSSVRFEN 954
            R  L+  L++     Q +++ R +   ++F  E   +G  + K +L      +       
Sbjct: 895  RAPLMAGLEDAMSLGQKIQQERESAQVSLFGVEEMTRGNGNGKGSLPDLPEWDDKFLLNQ 954

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LGFY +GHPLD Y   +R+       +         +++  +VV+K++  T+KG R
Sbjct: 955  EKEALGFYITGHPLDRYSAQIRRFASVHTSDFAEIKDKAEVKICGIVVAKKEFITKKGDR 1014

Query: 1015 IGWVTFSE 1022
            + +VT  +
Sbjct: 1015 MAFVTLED 1022


>gi|242240381|ref|YP_002988562.1| DNA polymerase III subunit alpha [Dickeya dadantii Ech703]
 gi|242132438|gb|ACS86740.1| DNA polymerase III, alpha subunit [Dickeya dadantii Ech703]
          Length = 1160

 Score =  781 bits (2017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1053 (41%), Positives = 626/1053 (59%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ K AA   PAIAITD  NL   ++F   A  AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPAIAITDFTNLCGLVKFYGGAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    +GYQ L  L+SR Y    G   
Sbjct: 64   PIIGADFYL----------QSEELGDELARLSVLAMNNDGYQNLTLLISRAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E    GL++L+GG  G I +     +  + ++ +  +++ F  R Y+ L R
Sbjct: 114  PTIEREWLVE-HQAGLLLLSGGRQGDIGKFLLRGNQTLVDQCVAFYQQHFPQRFYLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +      VV LA    LP+VATN+  F+SE+D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEESYLHAVVALATERGLPVVATNDVCFISEDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEALEN+VEIA+RC+  +++    LP+F      D+  E
Sbjct: 233  NYSPQQYMRSEQEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQF---PTGDMTTE 289

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +   LR  A  GLE RL         +     +Y +RL+ ELNVI +M F GYFLIV +F
Sbjct: 290  DYLVLR--AREGLEERLVFLFPDEEERANRRPEYDERLEIELNVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K NN+PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNNVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDLVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLGEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     VD+
Sbjct: 527  PLYCDPEGHHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINPRREKQGLEPVDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEK-----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+     I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA K G+   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFKEGAEKMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +KI     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I+EA  +   F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  DAGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRDLFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A+   +       ++F          +T     VE S 
Sbjct: 887  AFDRLGPHRAALMNSLPDAMKSAEQHARAEAIGQSDMFG--------VLTESPEQVEQSY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP++ Y K I R  G    ++   T RG       
Sbjct: 939  STVPPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYAGGGRLKDMHPTERGKVTIAVG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 999  LVLAARVMVTKRGNRIGVCTLDDRSGRLEVMLF 1031


>gi|146292466|ref|YP_001182890.1| DNA polymerase III subunit alpha [Shewanella putrefaciens CN-32]
 gi|145564156|gb|ABP75091.1| DNA polymerase III, alpha subunit [Shewanella putrefaciens CN-32]
          Length = 1157

 Score =  781 bits (2016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1051 (41%), Positives = 619/1051 (58%), Gaps = 52/1051 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      AGI+
Sbjct: 4    PRFVHLRVHSDFSMSDGVAKVKPILAQVEALGMAAVALTDQNNFCGLVKFYSGCHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-------SIVLLVSTAEGYQRLIELVSRMYL 121
            PIIG   D  MQ               VP       ++ ++     GYQ L +++S+ YL
Sbjct: 64   PIIGA--DFWMQ---------------VPGFEGEFCALTIIAMNNVGYQNLTQIISQAYL 106

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
              Q    V I   WL     EG+++L+G   G I +A    ++   E     ++  F +R
Sbjct: 107  RGQVAGRVVIDQEWLLTY-NEGILLLSGAKEGDIGKALLKGNNTQVESLCEFYQTHFAER 165

Query: 182  LYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             ++ L R    D  RY    VV LA     P+VATN  +FL  ED++AH++ +A+     
Sbjct: 166  YFLELIRTGRPDEERYLHMAVV-LAQEKGFPVVATNQVVFLKPEDFDAHEIRVAIHDGFT 224

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   RP+  +   YL++  EM  +F+D+P AL NTVEIA+RC+  ++++   LP F   
Sbjct: 225  LADPRRPKKYSEQQYLRSEEEMCELFADIPAALSNTVEIAKRCNVTIRLYEYFLPNFPTG 284

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +        E+ L + +  GLE RLA        +     +Y +RLD EL VI +M F G
Sbjct: 285  DM-----SIEDFLVDCSKKGLEERLAFLFPDPQVRAERRGEYDERLDIELQVINQMGFPG 339

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SM
Sbjct: 340  YFLIVMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSM 399

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFD+DFC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+
Sbjct: 400  PDFDVDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRI 459

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KLIP +P   ++ +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI 
Sbjct: 460  SKLIPPEPGMTLA-KAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIA 518

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
               ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +  VK
Sbjct: 519  PTKITDFAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVK 578

Query: 596  -----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 V +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+
Sbjct: 579  NGRPPVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALF 638

Query: 651  RPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            RPGP+ + +V N   RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LS
Sbjct: 639  RPGPLQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLS 698

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GY+L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNK
Sbjct: 699  GYTLGGADMLRRAMGKKKPEEMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNK 758

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA++SYQT W+KTHYP +F+AA M+ +MDN +KI     +  +  + ++PP VN 
Sbjct: 759  SHSAAYALVSYQTLWLKTHYPSQFMAAVMSADMDNTDKIVTLVDECERMGLTLIPPDVNK 818

Query: 824  PCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                F V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+
Sbjct: 819  GLFKFTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVI 878

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLE 941
            E L+ AGALD  G  R  ++ +L    + A    K +     ++F        D K    
Sbjct: 879  EKLICAGALDSLGPHRASMMATLPEAMRAADQHAKAQAIGQHDMFGLLNSEPEDSKQQFV 938

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            + +     +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +V
Sbjct: 939  ECTPWPDKIWLEGERETLGLYLTGHPINQYLKELKYYTSGRLKDVHPTERGKTVKAAGLV 998

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V+ +   T++GS++G +T  + +   E   F
Sbjct: 999  VATRVMLTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|319425768|gb|ADV53842.1| DNA polymerase III, alpha subunit [Shewanella putrefaciens 200]
          Length = 1157

 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1050 (41%), Positives = 619/1050 (58%), Gaps = 50/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      AGI+
Sbjct: 4    PRFVHLRVHSDFSMSDGVAKVKPILAQVEALGMAAVALTDQNNFCGLVKFYSGCHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-------SIVLLVSTAEGYQRLIELVSRMYL 121
            PIIG   D  MQ               VP       ++ ++     GYQ L +++S+ YL
Sbjct: 64   PIIGA--DFWMQ---------------VPGFEGEFCALTIIAMNNVGYQNLTQIISQAYL 106

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
              Q    V I   WL     EG+++L+G   G I +A    ++   E     ++  F +R
Sbjct: 107  RGQVAGRVVIDQEWLLTY-NEGILLLSGAKEGDIGKALLKGNNTQVESLCEFYQTHFAER 165

Query: 182  LYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ L R    D  R   + V LA    +P+VATN  +FL  ED++AH++ +A+     +
Sbjct: 166  YFLELIRTGRPDEERYLHMAVALAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTL 225

Query: 241  SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +   RP+  +   YL++  EM  +F+D+P AL NTVEIA+RC+  ++++   LP F   +
Sbjct: 226  ADPRRPKKYSEQQYLRSEEEMCELFADIPAALSNTVEIAKRCNVTIRLYEYFLPNFPTGD 285

Query: 300  CDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                    E+ L + +  GLE RLA        +     +Y +RLD EL VI +M F GY
Sbjct: 286  M-----SIEDFLVDCSKKGLEERLAFLFPDPQVRAERRGEYDERLDIELQVINQMGFPGY 340

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMP
Sbjct: 341  FLIVMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ 
Sbjct: 401  DFDVDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 460

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP +P   ++ +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI  
Sbjct: 461  KLIPPEPGMTLA-KAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAP 519

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
              ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +  VK 
Sbjct: 520  TKITDFAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKN 579

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                V +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+R
Sbjct: 580  GRPPVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639

Query: 652  PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PGP+ + +V N   RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSG
Sbjct: 640  PGPLQSGMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSG 699

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            Y+L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKS
Sbjct: 700  YTLGGADMLRRAMGKKKPEEMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKS 759

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT W+KTHYP +F+AA M+ +MDN +KI     +  +  + ++PP VN  
Sbjct: 760  HSAAYALVSYQTLWLKTHYPSQFMAAVMSADMDNTDKIVTLVDECERMGLTLIPPDVNKG 819

Query: 825  CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
               F V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E
Sbjct: 820  LFKFTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIE 879

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEK 942
             L+ AGALD  G  R  ++ +L    + A    K +     ++F        D K    +
Sbjct: 880  KLICAGALDSLGPHRASMMATLPEAMRAADQHAKAQAIGQHDMFGLLNSEPEDSKQQFVE 939

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             +     +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV
Sbjct: 940  CTPWPDKIWLEGERETLGLYLTGHPINQYLKELKYYTSGRLKDVHPTERGKTVKAAGLVV 999

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++GS++G +T  + +   E   F
Sbjct: 1000 ATRVMLTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|289208654|ref|YP_003460720.1| DNA polymerase III subunit alpha [Thioalkalivibrio sp. K90mix]
 gi|288944285|gb|ADC71984.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. K90mix]
          Length = 1159

 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1054 (41%), Positives = 621/1054 (58%), Gaps = 61/1054 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YSL++G + L  ++  +A    PA+A+TD  NLF  ++F + A A G+Q
Sbjct: 8    PGFVHLRVHSEYSLIDGLVRLKPLVAAVAEKGMPAVAVTDHCNLFGLVKFYRAAIAQGVQ 67

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG  L +          +      +V  + LL     GY+ L  L+SR +   Q K  
Sbjct: 68   PIIGADLLV----------RDARADGSVARMTLLAQNDPGYRNLTRLISRAWQEGQEKGI 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT------FKKLFGDRL 182
             RI   WL     EGLI L+GG  G      F + S VA  R+LT      + K F  R 
Sbjct: 118  PRIDAEWLDS-AAEGLIALSGGIDG-----LFVSGSGVA--RVLTHDDLAPWLKRFPGRF 169

Query: 183  YVNLQRHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            Y+ L R    G + + E Q +  A   ELP+VATN+  FL  ED+EAH+  + +   T +
Sbjct: 170  YLELTRTERPGEEAWIE-QALAAAEQFELPVVATNDVRFLKAEDFEAHEARVCIHDGTTL 228

Query: 241  SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                RPR   +H YL    EM   FSD+PEAL N+V IARRCS  L +   +LP F   E
Sbjct: 229  DDPSRPRRYSEHQYLATPQEMTERFSDIPEALANSVAIARRCSVSLTLGESVLPDFPVPE 288

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               +    E+ LR  +  GLE RL +   A+     +Y +RL  EL+VI +M F GYFLI
Sbjct: 289  GYTV----EDHLRETSAKGLEARLERFQFAE---RSEYEERLKLELDVICQMGFPGYFLI 341

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFIQWAK N IPVGPGRGSGAGS+ AY L ITD+DPLR+ LLFERFLNP+R+SMPDFD
Sbjct: 342  VADFIQWAKDNGIPVGPGRGSGAGSLVAYVLGITDLDPLRYELLFERFLNPERVSMPDFD 401

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI YV  +YG ++V+QIIT G++ AKA +RD GR L   Y  VDR+ KLI
Sbjct: 402  VDFCMEKRDDVIDYVAERYGRDKVSQIITHGTMAAKAVVRDCGRVLGYGYGFVDRIAKLI 461

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +    +  +A+A+    +     D  V  ++++++KLEGL R+A  HA G+VI    L
Sbjct: 462  PFELGMTLD-KALAESEDLKSQYDQDEEVRGIIDLARKLEGLTRNAGKHAGGVVIAPSAL 520

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--VKVD 597
            +   P+Y +      VT F+   +E  GL+KFDFLGL+TLT++  +++ + +     ++D
Sbjct: 521  TDFSPLYCEDDGGSLVTHFDKDDVEAVGLVKFDFLGLRTLTIIDWAVENVRKMDPETRID 580

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  +P DD +T+ LL    T  +FQLES GM+  +  +QPD  EDIIALV+LYRPGP+ +
Sbjct: 581  LDAVPLDDPDTFKLLKAYQTTAVFQLESGGMKDLIRRLQPDSFEDIIALVALYRPGPLQS 640

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  + +RK+G+ ++   HP ++P+L+ T GVI+YQEQVMQIAQ+L+ Y+L  AD+LRR
Sbjct: 641  GMVDDFIDRKHGRAQVEYPHPDLEPILQPTYGVILYQEQVMQIAQVLANYTLGGADLLRR 700

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ++ F+ GA   G+ +  A  IF+L+ KFA YGFNKSH+AAYA+++YQ
Sbjct: 701  AMGKKKPEEMAKQRQIFMEGALGRGVEEGTATYIFDLMEKFAGYGFNKSHSAAYALVAYQ 760

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NR 834
            TAW+K HYP  F+AA ++ +MDN +K+    ++ R   ++++PP VN     F   D   
Sbjct: 761  TAWLKAHYPAPFMAAVLSADMDNTDKVVGLIEECRNMGLEVLPPDVNQSDYRFTCRDAGT 820

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            + Y L AIKGVG +    +++A A D PF  L D C RVD  KLN+RVLE+LV AGALD 
Sbjct: 821  VVYGLGAIKGVGESAIETLLKARAVDGPFHGLIDLCQRVDLSKLNKRVLETLVRAGALDA 880

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRF 952
             G +R  LL  +      A+  E+N +    ++F         +  TL +   ++   R 
Sbjct: 881  IGANRATLLNDIPTAVAAAEQTERNASLGVVDLFGDPAAAVVPESETLPEMEDDD---RL 937

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--------------GNNIRLA 998
              E+  LG Y +GHP++ Y+  L+++    + E  A +                  +R+A
Sbjct: 938  RGEKETLGLYLTGHPVERYRAELKRLTGSTFAELEAKLEQRPDEGGQQGRRGRQETVRIA 997

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +VV  + + T+ G R+G  T  + +   E   F
Sbjct: 998  GLVVGVRVRNTQNG-RMGIATLDDRSGRAEIVLF 1030


>gi|15616854|ref|NP_240067.1| DNA polymerase III alpha chain [Buchnera aphidicola str. APS
            (Acyrthosiphon pisum)]
 gi|11132275|sp|P57332|DPO3A_BUCAI RecName: Full=DNA polymerase III subunit alpha
 gi|25288552|pir||A84958 DNA-directed DNA polymerase (EC 2.7.7.7) alpha chain [imported] -
            Buchnera sp. (strain APS)
 gi|10038918|dbj|BAB12953.1| DNA polymerase III alpha chain [Buchnera aphidicola str. APS
            (Acyrthosiphon pisum)]
          Length = 1161

 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1056 (41%), Positives = 641/1056 (60%), Gaps = 59/1056 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL VHS YS+++G     +++ K A+   PAIAITD NNL+  ++F   A   G++
Sbjct: 4    PKFIHLHVHSDYSMIDGLSKPEDLVKKAASLNMPAIAITDYNNLYGVIKFYNMAHKLGLK 63

Query: 69   PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG- 125
            PIIG  ++   D+ +N             +  + LL ST EGY+ LI L+SR Y   +G 
Sbjct: 64   PIIGITVNFFSDLINN------------QLTKLTLLASTQEGYKNLILLISRAY--QKGY 109

Query: 126  --KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                 V I   W  EI  +GLI+L+GG  G + +      S +    L  ++K F D  Y
Sbjct: 110  VHNNHVTIEKKWFSEI-NKGLILLSGGPQGELGKVLLNGQSSLISICLSFYQKYFPDSYY 168

Query: 184  VNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L R +R  +       V L+ +  +P+VATN+  FLS+ED++ H + +A+    ++  
Sbjct: 169  LELFRTNRDNEETYLHLAVDLSLSTGVPIVATNDVCFLSQEDFKIHKIRIAINEGEILQH 228

Query: 243  -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             K +   +   +LK   EM  +FSD+PEAL N+VEIA+RC+  +      LP+F   +  
Sbjct: 229  SKIQNNYSNQQFLKTTEEMSDLFSDIPEALINSVEIAKRCNVFIHSGKYFLPQFRTGKI- 287

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAI----AKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                  E  L  +A  G++ RL    +     K  ++Q Y  RLD EL VI +M F GYF
Sbjct: 288  ----SVEKYLIKEAYKGIKKRLNSRYLDIEKYKDIYSQ-YINRLDMELTVINKMGFPGYF 342

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV +FIQWAK NNIPVGPGRGSGAGS+ AYAL IT++DPL F+LLFERFLNP+R+SMPD
Sbjct: 343  LIVMEFIQWAKDNNIPVGPGRGSGAGSLVAYALNITEVDPLSFNLLFERFLNPERISMPD 402

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC ++RD+VI +V   YG   VAQIITFG+L AKA +RDVGR L  PY  +++L K
Sbjct: 403  FDIDFCMEKRDQVIDHVSEIYGKNAVAQIITFGTLTAKAVIRDVGRVLGYPYGFINKLSK 462

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+P DP   +  +A + +S        +  V  L++I++KLEG  R+   HA G+VI   
Sbjct: 463  LVPLDPGITLK-EAFSKESELFNLYKNNEDVKNLIDIAKKLEGTNRNIGKHAGGVVISPT 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQR 592
             ++   P+Y D + + PVTQF+   IE  GL+KFDFLGL+TLT++  +++ +       +
Sbjct: 522  KITDFCPLYCDEKGNNPVTQFDKNDIEYIGLVKFDFLGLRTLTIISYAVEMINTKLNLNK 581

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               ++++ IP DD + + LL    T G+FQLES GM+  ++ +QPDC ED+IALV+L+RP
Sbjct: 582  KRTININSIPLDDAKCFKLLKNSETTGVFQLESYGMKDLIKRLQPDCFEDMIALVALFRP 641

Query: 653  GPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V N  NRK+G+E I        H L+ P+L+ T G+I+YQEQVM+IAQ+LSGY
Sbjct: 642  GPLQSGMVDNFINRKHGRENISYPDHKWQHILLKPILESTYGIILYQEQVMEIAQVLSGY 701

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAM KK  ++M +Q+  F  GAS NGI K +++ IF+LL KFA YGFNKSH
Sbjct: 702  TLGSADILRRAMSKKNLKDMSEQRAIFEEGASNNGIDKKLSIKIFDLLEKFAGYGFNKSH 761

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            + AYA++SYQT W+K+HYP EF+AA+MT ++DN EKI     ++    ++I+PP++N   
Sbjct: 762  SVAYALVSYQTLWLKSHYPAEFIAAAMTSDIDNTEKIVILINESLNMGVKIIPPNINLSK 821

Query: 826  VDFKVGD-NRIYYSLAAIKGVGTTTAR-HIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
             +F V D   I Y L AIKG+G  + +  I E   +K F  L D C R+DS+K+ RRVLE
Sbjct: 822  YEFYVNDQGDIVYGLGAIKGIGKNSVQVLIKEREENKFFHDLFDLCMRIDSQKITRRVLE 881

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEK 942
             L+ +G+ DCF  +R  LLQS+D+    ++   + ++ K +++F    G F +++  ++K
Sbjct: 882  KLIMSGSCDCFDKNRNYLLQSIDDAINASKESFRIKSFKQDSLF----GIFQNELNQVKK 937

Query: 943  FSVEN----SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIR 996
             ++ N       + +NE +VLGFY +GHP++ YK  L +  + G + S      R   I 
Sbjct: 938  NNLVNLVCPEKNKLQNEYQVLGFYLTGHPINQYKKEL-ECYVNGVKLSQLKFIKRNKKIL 996

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +A ++VS + K T+  +RI  +   +     E   F
Sbjct: 997  VAGIIVSIKIKITKNKNRIAILVLDDNTSRLEVVIF 1032


>gi|323497991|ref|ZP_08103000.1| DNA polymerase III subunit alpha [Vibrio sinaloensis DSM 21326]
 gi|323317036|gb|EGA70038.1| DNA polymerase III subunit alpha [Vibrio sinaloensis DSM 21326]
          Length = 1159

 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1048 (41%), Positives = 626/1048 (59%), Gaps = 45/1048 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL++HS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A   GI+
Sbjct: 4    PKFVHLRIHSDFSMVDGLSKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGCGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  MQ +++  ++       +  + +L +   GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGA--DFAMQ-SVEFGDE-------LTKLTVLAADNVGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG SG I +A    + +VA +    ++  F DR Y+ L R
Sbjct: 114  PVIDKEWLTEL-AEGLIILSGGKSGEIGKALLKGNQKVAHECAEFYQTHFPDRFYLELTR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   ++ +   ELP+VATN+ + L +  ++AH++ +A+     +    R
Sbjct: 173  TGRADE--ESYLHFALEFSEQVELPVVATNDVVILDDSTFDAHEIRVAIHDGYTLEDPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +P  YL++  EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSPQQYLRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVA 361
             EE   L  K+  GLE RL          AQ   +Y  RL  EL VI  M F GYFLIV 
Sbjct: 286  MEETEFLVKKSEEGLEERLEFLFPDPEVRAQRRPEYDDRLKIELEVINNMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +    E   AD  V  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFKAEPALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  +     V
Sbjct: 525  FAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLAREGKDPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  AIESIPLDDQASFSLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E +        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAVSYPDEQWQHDSLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRATFEEGAVANGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECLRMKLKVLPPDINSGLYRFN 824

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y + AIKGVG      I+EA + D  F  L DFC+R+D KK+N+RV+E L++
Sbjct: 825  VNEDGEIVYGIGAIKGVGEGPIDAILEARNKDGHFKDLFDFCARIDLKKVNKRVIEKLIY 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFS 944
            AGALD  G  R  ++ SL++  K A    +       ++F            K T  K  
Sbjct: 885  AGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQSDLFGVLTEAPEEVEHKYT--KVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  PWPEKVWLEGERTTLGLYLTGHPINAYLKELGKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|157147384|ref|YP_001454703.1| DNA polymerase III subunit alpha [Citrobacter koseri ATCC BAA-895]
 gi|157084589|gb|ABV14267.1| hypothetical protein CKO_03182 [Citrobacter koseri ATCC BAA-895]
          Length = 1144

 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1041 (41%), Positives = 625/1041 (60%), Gaps = 56/1041 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G    +    
Sbjct: 1    MIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTGHGAGIKPIVGADFHV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  +G      +  + +L +   GYQ L  L+S+ Y    G +   I   WL E+  
Sbjct: 57   ------RGTPLGDELCQLTVLAANNTGYQNLTLLISKAYQRGYGAEGPVIDREWLTEL-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            +GLI+L+GG  G + R+    +S + ++ +  +++ F DR Y+ L R  R  +       
Sbjct: 110  DGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFSDRYYLELIRTGRQDEETYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA T  LP+VATN+  F++ ED++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAETRGLPVVATNDVRFINSEDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEDE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEALEN+VEIA+RC+  +++    LP+F   +        E+ L  K+  GL
Sbjct: 230  MCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDFLVKKSKEGL 284

Query: 320  EVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
            E RL       A+ K      Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVG
Sbjct: 285  EERLEFLFPDEAVRKEKRPP-YDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 343

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
            PGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V 
Sbjct: 344  PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 403

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
            + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   ++ +A   +
Sbjct: 404  DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLA-KAFEAE 462

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
             +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PV
Sbjct: 463  PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPV 522

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYH 610
            TQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     +D++ IP DD +++ 
Sbjct: 523  TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFD 582

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGK 668
            +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+
Sbjct: 583  MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 642

Query: 669  EKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  E
Sbjct: 643  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 702

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HY
Sbjct: 703  EMAKQRSVFEEGARKNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 762

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAI 842
            P EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AI
Sbjct: 763  PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 822

Query: 843  KGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGVG      I+EA + D  F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L
Sbjct: 823  KGVGEGPIEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 882

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRF 952
            + SL +  K A    K       ++F    G  ++    E   +E S          V  
Sbjct: 883  MNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVL 934

Query: 953  ENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
            + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A +V++ +   T++
Sbjct: 935  DGERETLGLYLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKR 994

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G+RIG  T  + +   E   F
Sbjct: 995  GNRIGICTLDDRSGRLEVMLF 1015


>gi|219682166|ref|YP_002468550.1| DNA polymerase III alpha chain [Buchnera aphidicola str. Tuc7
            (Acyrthosiphon pisum)]
 gi|219621899|gb|ACL30055.1| DNA polymerase III alpha chain [Buchnera aphidicola str. Tuc7
            (Acyrthosiphon pisum)]
 gi|311085980|gb|ADP66062.1| DNA polymerase III alpha chain [Buchnera aphidicola str. LL01
            (Acyrthosiphon pisum)]
 gi|311086554|gb|ADP66635.1| DNA polymerase III alpha chain [Buchnera aphidicola str. TLW03
            (Acyrthosiphon pisum)]
          Length = 1161

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1056 (41%), Positives = 641/1056 (60%), Gaps = 59/1056 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL VHS YS+++G     +++ K A+   PAIAITD NNL+  ++F   A   G++
Sbjct: 4    PKFIHLHVHSDYSMIDGLSKPEDLVKKAASLNMPAIAITDYNNLYGVIKFYNMAHKLGLK 63

Query: 69   PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG- 125
            PIIG  ++   D+ +N             +  + LL ST EGY+ LI L+SR Y   +G 
Sbjct: 64   PIIGITVNFFSDLINN------------QLTKLTLLASTQEGYKNLILLISRAY--QKGY 109

Query: 126  --KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                 V I   W  EI  +GLI+L+GG  G + +      S +    L  ++K F D  Y
Sbjct: 110  VHNNHVTIEKKWFSEI-NKGLILLSGGPQGELGKVLLNGQSSLISICLSFYQKYFPDSYY 168

Query: 184  VNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L R +R  +       V L+ +  +P+VATN+  FLS+ED++ H + +A+    ++  
Sbjct: 169  LELFRTNRDNEETYLHLAVDLSLSTGVPIVATNDVCFLSQEDFKIHKIRIAINEGEILQH 228

Query: 243  -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             K +   +   +LK   EM  +FSD+PEAL N+VEIA+RC+  +      LP+F   +  
Sbjct: 229  SKIQNNYSNQQFLKTTKEMSDLFSDIPEALINSVEIAKRCNVFIHSGKYFLPQFRTGKI- 287

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAI----AKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                  E  L  +A  G++ RL    +     K  ++Q Y  RLD EL VI +M F GYF
Sbjct: 288  ----SVEKYLIKEAYKGIKKRLNSRYLDIEKYKDIYSQ-YINRLDMELTVINKMGFPGYF 342

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV +FIQWAK NNIPVGPGRGSGAGS+ AYAL IT++DPL F+LLFERFLNP+R+SMPD
Sbjct: 343  LIVMEFIQWAKDNNIPVGPGRGSGAGSLVAYALNITEVDPLSFNLLFERFLNPERISMPD 402

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC ++RD+VI +V   YG   VAQIITFG+L AKA +RDVGR L  PY  +++L K
Sbjct: 403  FDIDFCMEKRDQVIDHVSEIYGKNAVAQIITFGTLTAKAVIRDVGRVLGYPYGFINKLSK 462

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+P DP   +  +A + +S        +  V  L++I++KLEG  R+   HA G+VI   
Sbjct: 463  LVPLDPGITLK-EAFSKESELFNLYKNNEDVKNLIDIAKKLEGTNRNIGKHAGGVVISPT 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQR 592
             ++   P+Y D + + PVTQF+   IE  GL+KFDFLGL+TLT++  +++ +       +
Sbjct: 522  KITDFCPLYCDEKGNNPVTQFDKNDIEYVGLVKFDFLGLRTLTIISYAVEMINTKLNLNK 581

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               ++++ IP DD + ++LL    T G+FQLES GM+  ++ +QPDC ED+IALV+L+RP
Sbjct: 582  KRTININSIPLDDAKCFNLLKNSETTGVFQLESYGMKDLIKRLQPDCFEDMIALVALFRP 641

Query: 653  GPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V N  NRK+G+E I        H L+ P+L+ T G+I+YQEQVM+IAQ+LSGY
Sbjct: 642  GPLQSGMVDNFINRKHGRENISYPDHKWQHILLKPILESTYGIILYQEQVMEIAQVLSGY 701

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAM KK  ++M +Q+  F  GA  NGI K +++ IF+LL KFA YGFNKSH
Sbjct: 702  TLGSADILRRAMSKKNLKDMSEQRAIFEEGALNNGIDKKLSIKIFDLLEKFAGYGFNKSH 761

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            + AYA++SYQT W+K+HYP EF+AA+MT ++DN EKI     ++    ++I+PP++N   
Sbjct: 762  SVAYALVSYQTLWLKSHYPAEFIAAAMTSDIDNTEKIVILINESLNMGVKIIPPNINLSK 821

Query: 826  VDFKVGD-NRIYYSLAAIKGVGTTTAR-HIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
             +F V D   I Y L AIKG+G  + +  I E   +K F  L D C R+DS+K+ RRVLE
Sbjct: 822  YEFYVNDQGDIVYGLGAIKGIGKNSVQVLIKEREENKFFHDLFDLCMRIDSQKITRRVLE 881

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEK 942
             L+ +G+ DCF  +R  LLQS+D+    ++   + ++ K +++F    G F +++  ++K
Sbjct: 882  KLIMSGSCDCFDKNRNYLLQSIDDAINASKESFRIKSFKQDSLF----GIFQNELNQVKK 937

Query: 943  FSVEN----SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIR 996
             ++ N       + +NE +VLGFY +GHP++ YK  L +  + G + S      R   I 
Sbjct: 938  NNLVNLVCPEKNKLQNEYQVLGFYLTGHPINQYKKEL-ECYVNGVKLSQLKFIKRNKKIL 996

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +A ++VS + K T+  +RI  +   +     E   F
Sbjct: 997  VAGIIVSIKIKITKNKNRIAILVLDDNTSRLEVVIF 1032


>gi|237729490|ref|ZP_04559971.1| DNA polymerase III subunit alpha [Citrobacter sp. 30_2]
 gi|226909219|gb|EEH95137.1| DNA polymerase III subunit alpha [Citrobacter sp. 30_2]
          Length = 1160

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1056 (41%), Positives = 627/1056 (59%), Gaps = 60/1056 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69   PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PI+G    +    + D L               + +L +   GYQ L  L+S+ Y    G
Sbjct: 64   PIVGADFHVRSELLGDELT-------------QLTVLAANNTGYQNLTLLISKAYQRGYG 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             +   I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F +  ++ 
Sbjct: 111  AEGPVIDRDWLVEL-KEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPNCYFLE 169

Query: 186  LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R    D        V LA T  LP+VATN+  FL   D++AH++ +A+     +    
Sbjct: 170  LIRTGRQDEENYLHAAVALAETRGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPK 229

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RPR  +P  Y+++  EM  +FSD+PEAL+NTVEIA+RC+  +++    LP+F   +    
Sbjct: 230  RPRNYSPQQYMRSEDEMCELFSDIPEALQNTVEIAKRCNVTVRLGEYFLPQFPTGDM--- 286

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIV 360
                E+ L  K+  GLE RL          AQ    Y +RL+ EL VI +M F GYFLIV
Sbjct: 287  --TTEDFLVAKSREGLEERLEFLFPDPEVRAQKRPPYDERLEVELKVINQMGFPGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 345  MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P
Sbjct: 405  DFCMEKRDQVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 465  PDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D +   PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     
Sbjct: 524  DFAPLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPP 583

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+
Sbjct: 584  LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643

Query: 656  DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ LSGY+L 
Sbjct: 644  QSGMVDNFIDRKHGREEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLG 703

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  F  GA K G+   +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 704  GADMLRRAMGKKKPEEMAKQRGTFEEGAKKRGVDGELAMKIFDLVEKFAGYGFNKSHSAA 763

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F
Sbjct: 764  YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886
             V D+  I Y + AIKGVG      I+EA  +   F  L D C+R D KKLNRRVLE L+
Sbjct: 824  HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDIKKLNRRVLEKLI 883

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             +GA D  G  R  L+ SL++  K A    K       ++F    G  ++    E   +E
Sbjct: 884  MSGAFDRLGPHRAALMNSLNDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIE 935

Query: 947  NS---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIR 996
             S          V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG    
Sbjct: 936  QSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTT 995

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             A +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 996  AAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|332042050|gb|EGI78388.1| DNA polymerase III, alpha subunit [Hylemonella gracilis ATCC 19624]
          Length = 1178

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1007 (42%), Positives = 601/1007 (59%), Gaps = 39/1007 (3%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +PSF HL++H+ +S+++GA  +++++   A D QPA+AITD NNLF A++F + A   G+
Sbjct: 3   TPSFAHLRLHTEFSVVDGATRVDDVVATAAKDGQPALAITDLNNLFGAIKFYKAARGKGV 62

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           +P+IG         ++ +   G  P  T   ++LLV   +GY  L EL++R +  +  K 
Sbjct: 63  KPVIGA--------DIVLEGLGTDPLAT-SRLLLLVQNKQGYLNLSELLARAWTGNVHKA 113

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              + L+WL+E+  EGLI+L+G  +G + +A     +  A    L F  LF  R Y+ LQ
Sbjct: 114 QAIVKLAWLKEL-HEGLIVLSGAQTGAVGQALVQGDTARAHDLALQFATLFPHRFYLELQ 172

Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
           R  R  D    +  VQLA   +LP+VAT+   FL+EEDYEAH+  + +A   ++    R 
Sbjct: 173 RAGRADDEVHVNAAVQLAARLKLPVVATHPVQFLTEEDYEAHEARVCIAEGEILGNPRRV 232

Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           R  T + Y K+ ++M ++F+DLP AL NT+EI +RC+  L +  P LP F       +  
Sbjct: 233 RKFTKEQYFKSAAQMQALFADLPSALANTLEIGKRCNLTLVLGKPQLPNFPIPGGLSM-- 290

Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             E+  R  ++ GLE RL+        +      Y +RL+FE+N I +M F GYFLIV D
Sbjct: 291 --EDYFRKVSLEGLEERLSHLYPEPAKRDAERPRYLERLEFEINTILKMGFPGYFLIVGD 348

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           FIQWAK N  PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 349 FIQWAKANGCPVGPGRGSGAGSLVAYALKITDLDPLAYKLLFERFLNPERVSMPDFDIDF 408

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           CQ  RD VI YV+ +YG E V+QI TFG++ A+AA+RDVGR + M Y+  D + KLIPN 
Sbjct: 409 CQANRDRVIEYVKERYGREAVSQIATFGTMAARAAIRDVGRVMDMSYTFCDGISKLIPNK 468

Query: 483 PAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
           P   +++  AI +     E +  +  V  LLE++QKLEG+ R+   HA G++I    L+ 
Sbjct: 469 PGQHITIDGAIKEVPELAERQAKEDEVKNLLELAQKLEGMTRNVGMHAGGVLIAPGKLTD 528

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVDL 598
             P+Y+   SD  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F+ +R         
Sbjct: 529 FCPLYQQPGSDAAVSQYDKDDVEAVGLVKFDFLGLATLTILEIAREFIMKRHPGQEHFSF 588

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             IP DD  TY L     T  +FQ ES GM+  L   +P  +ED+IAL +LYRPGP+D I
Sbjct: 589 EAIPLDDKATYQLFQDGKTEAVFQFESRGMQGMLRDAKPTRLEDLIALNALYRPGPMDLI 648

Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             +  RK+G+E+I   HPL+  ML ET G+++YQEQVMQ AQ+L GYSL  AD+LRRAMG
Sbjct: 649 PSFVARKHGREEIEYPHPLVADMLSETYGIMVYQEQVMQTAQILGGYSLGGADLLRRAMG 708

Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           KK  EEM + +E F  GA++NGI++  A  IF+L+ KFA YGFNKSHAAAY++++Y TAW
Sbjct: 709 KKKAEEMAQHREIFRKGAAQNGIAQDKADEIFDLMEKFAGYGFNKSHAAAYSLLAYHTAW 768

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYY 837
           +K HY  EF  A+MT+EMD+ +K+K   +DA++  +   PP VN     F+ V D  I Y
Sbjct: 769 LKVHYTAEFFCANMTVEMDDTDKLKVLFEDAQKMGMHFEPPDVNRGHYRFEPVSDTVIRY 828

Query: 838 SLAAIKGVGTTTARHIMEASADK----------PFDSLEDFCSRVDSKKLNRRVLESLVF 887
            L A+KG G      I+ A   +          PF SL DFC RVD  ++N+R +E+L+ 
Sbjct: 829 GLGAVKGTGQQAIEAIVAAREGRGEGPAGSECGPFKSLYDFCKRVDRARINKRTVEALIK 888

Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEKGTFSDKITLEKFSVE 946
           AGA D    +R +LL S D    +A     N       ++ A + G      T E   VE
Sbjct: 889 AGAFDSLHLNRAELLASTDRAFDFAAATAANANQGGLFDLMADDGGDSHGSSTQEPELVE 948

Query: 947 ----NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
                   R  +E+  +GFYFSGH  D     +R+   +   E + T
Sbjct: 949 ALPWGVKERLSHEKTAVGFYFSGHLFDEVAHEVRRFAKRELAELIDT 995


>gi|300724779|ref|YP_003714104.1| DNA polymerase III subunit alpha [Xenorhabdus nematophila ATCC 19061]
 gi|297631321|emb|CBJ92016.1| DNA polymerase III, alpha subunit [Xenorhabdus nematophila ATCC
            19061]
          Length = 1160

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1049 (41%), Positives = 628/1049 (59%), Gaps = 46/1049 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K+A    PA AITD  NL   ++F   A +AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKVAKLGMPAFAITDFTNLCGLVKFYGSAHSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  ++ +L               + +L    EGYQ L  L+S  Y    G   
Sbjct: 64   PIIGA--DFYVESDLLGDEYAH--------LTVLACNNEGYQNLTLLISESYQKGYGAVG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL++  + GLI+L+GG  G + +     +  + E+ L  +++ F +  Y+ L R
Sbjct: 114  PTIKREWLEKY-SAGLILLSGGRMGDVGKFLLRGNRAMVEQCLDFYQEHFPNSYYLELIR 172

Query: 189  HRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D        V+LA    LP+VATN+  FL  ED++AH++ +A+     ++   RP+
Sbjct: 173  TGRLDEENYLHAAVELAAEKNLPVVATNDVCFLESEDFDAHEIRVAIHDGYTMADPKRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL++  EM  +FSD+PEAL+N+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYLRSEQEMCELFSDIPEALQNSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL          AQ   +Y  RLD ELNVI +M F GYFLIV +F
Sbjct: 288  TEDFLVEKSKQGLEERLEFLYPDPEIRAQKRPEYDDRLDIELNVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERISMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +    IA + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLEKAFIA-EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     +D+
Sbjct: 527  PIYCDPEGQNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMVNARRAKKDLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDQKSFDMLQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F +G+ K G++  +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKQPEEMAKQRSVFEAGSIKQGVNGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I+EA      F  L D C+RVD+KK+NRRV+E L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIEARQKAGHFKELFDLCARVDTKKINRRVMEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL++  K A    K       ++F    G  ++K    + +  ++ 
Sbjct: 887  AFDRLGPHRAALMSSLEDAFKAADQHAKAEATGQTDMF----GVLAEKPEQVEHAYASTP 942

Query: 949  ----SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP+  Y K I R       ++   T RG    +  +V++
Sbjct: 943  KWPDQVVLDGERETLGLYLTGHPITSYLKEIERYTNGMRLKDVNPTPRGQVTTVVGLVLA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 SKILTTKRGNRIGISTLDDRSGRLEIMLF 1031


>gi|254228403|ref|ZP_04921829.1| DNA polymerase III, alpha subunit subfamily, putative [Vibrio sp.
            Ex25]
 gi|262393535|ref|YP_003285389.1| DNA polymerase III subunit alpha [Vibrio sp. Ex25]
 gi|151938991|gb|EDN57823.1| DNA polymerase III, alpha subunit subfamily, putative [Vibrio sp.
            Ex25]
 gi|262337129|gb|ACY50924.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25]
          Length = 1159

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1048 (41%), Positives = 626/1048 (59%), Gaps = 45/1048 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +  I+ K+A    PA+A+TD  NL   ++F   A  +G++
Sbjct: 4    PKFIHLRVHSDFSMVDGLNKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  MQ +      G+     +  + LL +   GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGA--DFKMQSD----EFGEE----LTQVTLLAADNVGYKNLTLLISKAYLRGHVQHH 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E+ +EGLI+L+GG SG I R     + Q+ +  +  +K+ F DR Y+ L R
Sbjct: 114  PVIDKAWLAEM-SEGLIVLSGGKSGEIGRGLLKGNRQIVQGCVDFYKQHFPDRFYLELLR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA   +LP+VATN  +FLS + ++AH++ +A+     +    RP+
Sbjct: 173  TGRPDEETYLHFAVELAEQQDLPVVATNEVVFLSPDLFDAHEIRVAIHDGYTLEDPRRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       +
Sbjct: 233  NYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM-----K 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +F
Sbjct: 288  ETEFLVMKSREGLEERLEFLFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KLIP DP
Sbjct: 408  MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +    E   AD  V  L+++   LEG  R+A  HA G+VI    ++   
Sbjct: 468  GMTLD-KAFKAEPALPELYEADEEVKELIDMCHILEGCTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  +     V +
Sbjct: 527  PIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPVQI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP +D  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + 
Sbjct: 587  ESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E I        H  +   L  T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDEKWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRAIFEEGAIKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  + ++PP +N+    F V 
Sbjct: 767  VSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVD 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +N  I Y + AIKGVG      I+EA +    F  L DFC+RVD K++N+RV+E L++AG
Sbjct: 827  ENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARVDLKRVNKRVIEKLIYAG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----KITLEKFS 944
            ALD  G  R  ++ SL++  K A    +       ++F    G  +D     +    +  
Sbjct: 887  ALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQTDMF----GVLTDAPEEVEHKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  PWPEKVWLEGERDTLGLYLTGHPINAYVKELNKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|269966266|ref|ZP_06180355.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 40B]
 gi|269829181|gb|EEZ83426.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 40B]
          Length = 1159

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1048 (41%), Positives = 626/1048 (59%), Gaps = 45/1048 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +  I+ K+A    PA+A+TD  NL   ++F   A  +G++
Sbjct: 4    PKFIHLRVHSDFSMVDGLNKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  MQ +      G+     +  + LL +   GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGA--DFKMQSD----EFGEE----LTQVTLLAADNVGYKNLTLLISKAYLRGHVQHH 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E+ +EGLI+L+GG SG I R     + Q+ +  +  +K+ F DR Y+ L R
Sbjct: 114  PVIDKAWLAEM-SEGLIVLSGGKSGEIGRGLLKGNRQIVQGCVDFYKQHFPDRFYLELLR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA   +LP+VATN  +FLS + ++AH++ +A+     +    RP+
Sbjct: 173  TGRPDEETYLHFAVELAEQQDLPVVATNEVVFLSPDLFDAHEIRVAIHDGYTLEDPRRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       +
Sbjct: 233  NYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM-----K 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +F
Sbjct: 288  ETEFLVMKSREGLEERLEFLFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KLIP DP
Sbjct: 408  MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +    E   AD  V  L+++   LEG  R+A  HA G+VI    ++   
Sbjct: 468  GMTLD-KAFKAEPALPELYEADEEVKELIDMCHILEGCTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  +     V +
Sbjct: 527  PIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPVQI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP +D  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + 
Sbjct: 587  ESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E I        H  +   L  T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDEKWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRAIFEEGAIKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  + ++PP +N+    F V 
Sbjct: 767  VSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVD 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +N  I Y + AIKGVG      I+EA +    F  L DFC+RVD K++N+RV+E L++AG
Sbjct: 827  ENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARVDLKRVNKRVIEKLIYAG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----KITLEKFS 944
            ALD  G  R  ++ SL++  K A    +       ++F    G  +D     +    +  
Sbjct: 887  ALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQTDMF----GVLTDAPEEVEHKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  PWPEKVWLEGERDTLGLYLTGHPINAYVKELNKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|308048684|ref|YP_003912250.1| DNA polymerase III, alpha subunit [Ferrimonas balearica DSM 9799]
 gi|307630874|gb|ADN75176.1| DNA polymerase III, alpha subunit [Ferrimonas balearica DSM 9799]
          Length = 1165

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1059 (41%), Positives = 618/1059 (58%), Gaps = 60/1059 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +  +L ++A    PA+A+TD  NL   ++F   A  +GI+
Sbjct: 4    PKFIHLRVHSDFSMVDGLAKVGPLLKRVAELGMPAVALTDQTNLCGLVKFYSGAHGSGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  M   L+   Q +        +V+L     GY  L EL+SR YL       
Sbjct: 64   PIIGA--DFWMLSPLQGDEQSR--------LVVLAMNNTGYANLTELISRAYLRGHVDHR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL+E+G EGLI+L+G   G + +A    +  +A +    ++  F DR YV L R
Sbjct: 114  PVIDREWLEELG-EGLILLSGAKDGELGKALVKGNLAMAREIASFYQTHFPDRYYVELHR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D       V  A    LPLVATN  +FL +ED+E H++ + +     +    RPR
Sbjct: 173  TGRADDESYLHSAVDFADEMGLPLVATNEVVFLQKEDFEFHEIRVCIHDGYPLDDARRPR 232

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + +   YL++  EM  +F+D+PEAL+N+VEIA+RC+  +++    LP F   +      +
Sbjct: 233  LYSEQQYLRSEEEMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPDFPTGDL-----K 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L   +  GLE RL         +      Y +RL  EL VI  M F GYFLIV +F
Sbjct: 288  IEDFLVKVSEEGLEERLEFLFPDPEERAAKRPAYDERLKIELEVINNMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRRDEVI +    YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KLIP DP
Sbjct: 408  MDRRDEVIEHTAELYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPFGFVDRISKLIPGDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + + +E    D  V  L++I++KLEG  R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEVEPQLQEVYDGDEEVRTLIDIARKLEGTTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++Q +LD L     A+    V +
Sbjct: 527  PLYCDDEGKHPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWALDMLNPALEAKGKAPVRI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  ++ LL    T  +FQLES GM++ +  ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  ESIPLDDPRSFELLQRSETTAVFQLESRGMKELISRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDETWQHESLKPILEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT WMKTH+P  F+AA M+ +MDN +K+     +  +  + ++PP VN     F V 
Sbjct: 767  VSYQTLWMKTHFPSYFMAAVMSADMDNTDKVVTLVDECNRMGLPVLPPDVNQGLYKFNVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +   I Y + AIKGVG      I+ A      F  L DFC+RVD KK+NRR +E L+ AG
Sbjct: 827  EKEEIVYGIGAIKGVGEGPVDEILAARERGGKFLDLFDFCNRVDLKKVNRRTIEKLILAG 886

Query: 890  ALDCFG-------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            A+D  G         R  L+ +L+   K A    +N     +++F    GT    +T E 
Sbjct: 887  AMDNLGPRLPDGAPHRASLMATLEEAMKSAAQNARNLAQGMDDLF----GT----LTPEP 938

Query: 943  FSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
                +S V+          + E+  LG Y +GHP++ Y   L+K      ++   T RG 
Sbjct: 939  EQAHHSFVKVAPWSDKEWLDGERETLGLYLTGHPINQYLKELKKFTAGRLKDVSPTGRGK 998

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              R A +V++ +   T++GS++G  T  + +   E   F
Sbjct: 999  TTRAAGLVIASRIMITKRGSKMGIFTLDDKSGRLEVMLF 1037


>gi|253687352|ref|YP_003016542.1| DNA polymerase III, alpha subunit [Pectobacterium carotovorum subsp.
            carotovorum PC1]
 gi|251753930|gb|ACT12006.1| DNA polymerase III, alpha subunit [Pectobacterium carotovorum subsp.
            carotovorum PC1]
          Length = 1160

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1049 (41%), Positives = 622/1049 (59%), Gaps = 46/1049 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ K AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    ++  D L            +  + +L    EGYQ L  L+S+ Y    G   
Sbjct: 64   PIIGADFCVE-SDELG---------DELAHLTILAMNNEGYQNLTLLISQAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E   EGLI+L+GG  G + R     +   AE+ L  +++ F  R Y+ L R
Sbjct: 114  PTIDRNWLIE-HREGLILLSGGRRGDVGRFLLRGNQTQAEQCLAFYQEYFPQRYYLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA  H LP+VATN   F+S +D++AH++ +A+     +    RPR
Sbjct: 173  TSRPDEESYLHAAVELATKHGLPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L   +  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVECSKKGLEERLEFLFPDPEVRAARRPEYDERLDIELGVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     +D+
Sbjct: 527  PLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKQGQEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   G++  +AV IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKNPVEMAKQRGGFEDGAKARGVNGELAVKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947
            A D  G  R  L+ SL +  K A    K       ++F    G  ++     + S     
Sbjct: 887  AFDRLGPHRAALMNSLADALKAADQHAKAEAIGQVDMF----GVLAEAPEQVEQSYSTVP 942

Query: 948  ---SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP+  Y K I R  G    ++   T RG       +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTAVGLVLA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLEIMLF 1031


>gi|317152330|ref|YP_004120378.1| DNA polymerase III subunit alpha [Desulfovibrio aespoeensis Aspo-2]
 gi|316942581|gb|ADU61632.1| DNA polymerase III, alpha subunit [Desulfovibrio aespoeensis Aspo-2]
          Length = 1173

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1050 (41%), Positives = 626/1050 (59%), Gaps = 42/1050 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+GA+ +N++L +      PA+AITD  ++F A+ F  +A A GI+PI
Sbjct: 4    FVHLHVHSEYSLLDGAIRINDLLARAKDLGMPAVAITDHGSMFGAMTFYTEALAMGIKPI 63

Query: 71   IGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IGC++ +   D+ D      + K+       +VLL     GY+ LI+LV+  YL  +G  
Sbjct: 64   IGCEVYVAPGDIDDAHAHEVKDKS---GGYHLVLLAKNRIGYKNLIKLVTTGYL--EGFY 118

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                   +L +   EGLI L+   +G + R       +        ++ +F    Y+ LQ
Sbjct: 119  YKPRVSKYLLKQHAEGLIALSACLAGEVPRMLMNEGLEAGAAMAGEYESIFPGNFYLELQ 178

Query: 188  RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +    + R +++ ++ A    LPLVATN+  +L+ EDYEAHD L+ +   T V  + R 
Sbjct: 179  DNGIGKQTRLNELLIKCAEKTGLPLVATNDCHYLTAEDYEAHDTLLCIQTQTTVDAEKRF 238

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQ 304
            R+ T + Y K   EM   F+ +PEA+ NT  IA RC+  +++ +   P + + +   DI 
Sbjct: 239  RMDTRELYFKTPEEMEQAFAHVPEAIANTQRIAERCNLEIELGSYYFPEYELSEGVADIN 298

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +E E   R     GL  RLA  AI        Y +RLD+EL VI +M F  YFLIV DFI
Sbjct: 299  EEFEKLCRE----GLRKRLA--AIPYPVDEAVYWKRLDYELGVIIKMGFPAYFLIVQDFI 352

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAK N IPVGPGRGS AGS+ A++L IT++DPL + LLFERFLN +R+SMPD D+DFC+
Sbjct: 353  NWAKDNRIPVGPGRGSAAGSIVAWSLRITNLDPLPYDLLFERFLNVERISMPDIDVDFCE 412

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR EV++Y  +KYGH+RVAQI TFG+++ KA ++DVGRAL M + + DR+ KLIP DP 
Sbjct: 413  RRRLEVVKYCADKYGHDRVAQITTFGTMKTKAVIKDVGRALGMTFGETDRIAKLIPEDPG 472

Query: 485  HPVSL-----------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
                L            A+       +    DP V +L++IS +LEGL RHASTHAAG+V
Sbjct: 473  VMAKLLGVEKAKISVPNAVKAVIELDDMVATDPRVAKLIDISTRLEGLCRHASTHAAGVV 532

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            I DRP+++ +P+Y+  + ++ VTQF+MK +EK GLIKFDFLGL+T+T+++  LD + ++G
Sbjct: 533  ISDRPMTEFLPLYKGKKGEI-VTQFDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIREQG 591

Query: 594  VKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                DL  +  DD  TY +     T GIFQ+ESSGMR+ L  ++P+C EDIIA+++LYRP
Sbjct: 592  KHAPDLDTLALDDPATYDIFAKGDTDGIFQVESSGMRKYLRMLRPNCFEDIIAMLALYRP 651

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+   +V  +  RK+G+  +   HP ++  LK T GV++YQEQVM  A +++ YSL E 
Sbjct: 652  GPLGMGMVDEFIKRKHGEVAVSYPHPSLEDTLKPTYGVMVYQEQVMATAMIIANYSLGEG 711

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKI EEM  Q+ RF+ GA +N I + +A  IF+ + KFA YGFNKSH+AAYA
Sbjct: 712  DLLRRAMGKKIAEEMAMQRARFLEGARENKIDEAVANAIFDTMEKFAAYGFNKSHSAAYA 771

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +ISY TA++K H+PVEF+AA M+ EM+N EKI  +    R  +I +  P +N     F V
Sbjct: 772  LISYHTAYLKAHFPVEFMAALMSTEMNNTEKIVMYINACRDMDITVKQPDINAGQARFSV 831

Query: 831  GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  I +++AAIK VG      I+ E  A  PF  +  FC R++ +++ +RVLESL+ AG
Sbjct: 832  LDGDILFAMAAIKNVGEEAINEIVAERVAGGPFKDIFAFCERINLRRVTKRVLESLIKAG 891

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI------TLEKF 943
            ALDCF  SR  LL+ L+    + Q   K + +   ++     G  +         + E+F
Sbjct: 892  ALDCFSCSRAALLEDLEKAVGFGQKKAKEKESGMLSMLDMLGGASAQAAHTPTCSSCEEF 951

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
               +   + E E+ VLGF+ SGHPL  Y+  L ++     E+  +   G  +R+A ++  
Sbjct: 952  ---DDREKLEMEKEVLGFFLSGHPLLAYRHELARLRTATLEDCKSMPNGTEVRVAVIIPD 1008

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +Q  T+KG  + + T  +     E    P
Sbjct: 1009 YKQFITKKGDPMAFCTAEDLTTSGEITMLP 1038


>gi|51245515|ref|YP_065399.1| DNA polymerase III, alpha subunit [Desulfotalea psychrophila LSv54]
 gi|50876552|emb|CAG36392.1| related to DNA polymerase III, alpha subunit [Desulfotalea
            psychrophila LSv54]
          Length = 1199

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1052 (41%), Positives = 638/1052 (60%), Gaps = 46/1052 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  F HL VH+ YSLL+GA+ L +++DK       ++AITD   ++ ALEF  KA  AGI
Sbjct: 25   SAGFTHLHVHTQYSLLDGAIRLPDLIDKCKEFGMDSVAITDHGAMYGALEFYTKAKKAGI 84

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +PI+G +L I   DM++  K+  Q      T   IVLL     GYQ L+++ S +   D 
Sbjct: 85   KPIVGSELYIAPGDMREQKKINGQ------TAYHIVLLAMNKTGYQNLMKMAS-IAQSDG 137

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI ++ LQE   EG+I LT    G +           A K+      +FGDRLY 
Sbjct: 138  FYYKPRIDMAVLQEY-NEGIIALTACLHGQVPYLIMKGDMDGARKKAQELHDIFGDRLYF 196

Query: 185  NLQRHRGYDRYRESQVVQ-----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             LQ     +   E Q V      LA    + LVATN+  +L+ ++  AH+VL+ +     
Sbjct: 197  ELQE----NSIAEQQPVNAGLKILAKEMGVKLVATNDCHYLNRQEAHAHEVLLCIQMGKT 252

Query: 240  VSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++  +R R + D  Y K+  EM   F   PEA+ +T EIA RC+  L       P F   
Sbjct: 253  INDTNRFRFSSDEFYFKSPKEMERAFHHCPEAIASTQEIADRCNLELTFDDYYFPNFPVP 312

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSG 355
            E + +              GLE R  +      Y     + Y+ RL+ E++VI  M F G
Sbjct: 313  EGESLS----TMFTTACWEGLETRFEEMRALGSYKDNTEKTYKARLEMEIDVINTMGFPG 368

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI WAK  +IPVGPGRGSGAGS+ AYA+ IT+IDP+ + L+FERFLN +R SM
Sbjct: 369  YFLIVADFINWAKSKDIPVGPGRGSGAGSIAAYAMKITNIDPMPYGLIFERFLNIERKSM 428

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            PDFDIDFCQDRR EVI YV+ KYG  E VAQIIT+GS++A+  +RDVGRAL +P+++VDR
Sbjct: 429  PDFDIDFCQDRRGEVIDYVRRKYGGAEHVAQIITYGSMKARGVIRDVGRALDIPFTEVDR 488

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            + KL+P D      L+A+A++ + +EA   DP +  L+ +S+ LEGL RH S HAAG+VI
Sbjct: 489  IAKLVP-DQLKMTLLKALAEEPKLQEAADNDPQIQELISVSKTLEGLARHTSVHAAGVVI 547

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRG 593
               P++  +P  R   +D  VTQ++MK  E  GLIKFDFLGLKTLT++ K++  + A + 
Sbjct: 548  SPEPMTHYLPTCRGGEADERVTQYDMKHTEMTGLIKFDFLGLKTLTVIDKAVKHVHADKK 607

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            + +++  IP DD +T+ LL     LG+FQLES GMR+ L  M P+   D+IALV+LYRPG
Sbjct: 608  IPLNIDAIPMDDPKTFDLLCRGDALGVFQLESEGMRELLVKMAPEQFSDLIALVALYRPG 667

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D+ +V  +   K+G+ +     P + P+L+ET GVI+YQEQVM+IA +L+ YSL +AD
Sbjct: 668  PLDSGMVDDFVETKHGRAEANYPLPQLKPVLEETYGVIVYQEQVMKIASILANYSLGDAD 727

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKKI   MD++K +F+ GA KN +    A  +F+L+AKFA YGFNKSH+AAYA+
Sbjct: 728  ILRRAMGKKIAAVMDEEKVKFMEGAEKNEVPLDKAEYVFDLMAKFAGYGFNKSHSAAYAL 787

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQTA++K H+P +F+AA ++ +M+N +K+ ++  + ++ +I+++PP +N    DF V 
Sbjct: 788  VSYQTAYLKAHHPAQFMAALLSCDMNNTDKVVRYINECKEQHIEVLPPDINESFKDFTVI 847

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            ++RI + +AA+K VG      I+E   AD P+ S+ DFC+RVDS+K+N RV+ESLV +G+
Sbjct: 848  NDRIRFGMAAVKNVGGAALDSIIEERQADGPYTSISDFCNRVDSRKVNSRVIESLVKSGS 907

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---------ITLE 941
             D  GY R Q ++ L+   + A+ V++++ +   ++FA  + +   K           +E
Sbjct: 908  FDSLGYKRSQFIEVLEKAMEQAKAVQRDKQSGQISLFAVAQPSAGQKDQEVNSLHMPDME 967

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            ++S +   + FE E   +GFY +GHPLD   P L+ +      + V       +R+  +V
Sbjct: 968  EWS-DKQKLLFEKE--TVGFYITGHPLDDVMPELKTIIDAQIHDLVDKDEDQAVRIGGLV 1024

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + ++ +++KG  + ++T  +  +  E   FP
Sbjct: 1025 RTYKKHRSQKGDAMAFITIEDIFEAVEVVVFP 1056


>gi|254796559|ref|YP_003081395.1| DNA polymerase III subunit alpha [Neorickettsia risticii str.
           Illinois]
 gi|254589796|gb|ACT69158.1| DNA polymerase III subunit alpha [Neorickettsia risticii str.
           Illinois]
          Length = 1060

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/953 (45%), Positives = 605/953 (63%), Gaps = 70/953 (7%)

Query: 32  ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91
           I+D   A   PA+A+TD + +  ALEF++ A A+GIQPIIG  L I              
Sbjct: 10  IVDLARAAGMPAVALTDIDTMAGALEFAEYAKASGIQPIIGVDLSISHN----------- 58

Query: 92  PFPTVPSIVLLVS-TAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT--EGLIMLT 148
               V S +LL++   EGY+ +I+L         G  S+R     L E+ T  +GLI+L 
Sbjct: 59  ---RVDSRLLLIAKNEEGYRNMIKL--------SGIVSLRRV--ALNEVFTYSKGLILLL 105

Query: 149 GGSSGPIDRAFFFNS----SQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLA 204
           G         FF ++    S  AE  +   K++F   L++ +QR    ++  E +++QL 
Sbjct: 106 G--------EFFIDAINSYSIDAETLVSDLKQVFDKDLFIEIQRLG--NQSAEEKLIQLG 155

Query: 205 YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
           Y H +P VATN+ LF   +  EAHDVL  +   T V+  +R   +P+ Y K+  EMV++F
Sbjct: 156 YKHNIPFVATNDVLFPDTDFREAHDVLTCIGSLTYVNDINRIHYSPESYFKSTEEMVALF 215

Query: 265 SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
           +DL EAL NTV IARRCSF+ +V +PILP+F   EC   + +E +ELR  + AGL+ R+ 
Sbjct: 216 ADLKEALHNTVLIARRCSFMPEVRSPILPKF---EC---EMDESDELRRLSYAGLQRRMG 269

Query: 325 QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                     Q+Y  RL++EL +I  M ++GYFLIVADFI W+K N I VGPGRGSG GS
Sbjct: 270 ADV------PQNYLDRLEYELGIIIDMNYAGYFLIVADFICWSKANGIVVGPGRGSGVGS 323

Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
           + A+ L IT +DPL+F+L FERFLNP R+SMPDFD+DFCQ++R  VI YV+ KYGH  VA
Sbjct: 324 IVAWCLGITGLDPLKFALFFERFLNPVRVSMPDFDVDFCQEKRHLVIEYVRKKYGH--VA 381

Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARL 503
           QI+TFG+LQ +AALRDVGR LQ+PY +VDR+CK+IPN+PA+P+SLQ AI  D   ++   
Sbjct: 382 QIMTFGTLQPRAALRDVGRVLQLPYGRVDRICKMIPNNPANPISLQEAINLDKDLQKESE 441

Query: 504 ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563
            D S+ +LL+++ KLEG  RHASTHAAGIVI D P+   +P+Y D  SD+PVTQ++MK++
Sbjct: 442 NDESIAKLLDLALKLEGTLRHASTHAAGIVISDTPIDDYLPIYHDKESDIPVTQYSMKYV 501

Query: 564 EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
           EKAGLIKFDFLGLKTLT++ ++   +  +    D+  IP DD  TY LL+    +G+FQL
Sbjct: 502 EKAGLIKFDFLGLKTLTVINQACSLVRLKNPNFDIDSIPLDDKRTYDLLSAGNAIGVFQL 561

Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
           +++ M + L+ + PDC EDIIAL+SL RPGP+ NI  Y  RK+ KE +   HPL++  LK
Sbjct: 562 DNAYMCETLKRLHPDCFEDIIALISLNRPGPMANIPTYIARKHRKEAVKYPHPLLESSLK 621

Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
           ET GV+IYQEQVM++ +LL+GY+L+EAD+LRR MGKKI+ EM +Q E+F+ GA +NGI  
Sbjct: 622 ETFGVVIYQEQVMEMVRLLAGYTLAEADILRRVMGKKIRAEMSEQAEKFVEGAKRNGIDT 681

Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             A  IFE++ KFA YGFNKSHAAAYA+ISYQTA++K ++P+EF  A++ LE+ + +K+ 
Sbjct: 682 ERAREIFEMIEKFAGYGFNKSHAAAYALISYQTAFLKANFPLEFTTAALNLELHHTDKLA 741

Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
              QDA+   I I+PP +N   + F + DN I YSLAA+K VG   A  I + S   PF 
Sbjct: 742 ILIQDAKNCGITILPPDINKSKIFFSIEDNAIRYSLAALKNVGEAAASAIQKRS---PFK 798

Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
           ++ +    +D K ++R+ +ESL+ +GALD     R  L   L ++      V K      
Sbjct: 799 TIAELQRCLDGKMVHRKAVESLIKSGALDVLSPERSGLYSCLKDL------VGKEDDGAQ 852

Query: 924 ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
             +F  E      + T++ +   N   R + E    GF+   HPL  Y+  L+
Sbjct: 853 MTLF--EIAATKPEKTVKPW---NFFERTQCEFDAFGFFLYDHPLFPYRKFLK 900


>gi|91223488|ref|ZP_01258753.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 12G01]
 gi|91191574|gb|EAS77838.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 12G01]
          Length = 1159

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1048 (41%), Positives = 626/1048 (59%), Gaps = 45/1048 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +  I+ K+A    PA+A+TD  NL   ++F   A  +G++
Sbjct: 4    PKFIHLRVHSDFSMVDGLNKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  MQ +      G+     +  + LL +   GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGA--DFKMQSD----EFGEE----LTQVTLLAADNVGYKNLTLLISKAYLRGHVQHH 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E+ +EGLI+L+GG SG I R     + Q+ +  +  +K+ F DR Y+ L R
Sbjct: 114  PVIDKAWLAEM-SEGLIVLSGGKSGEIGRGLLKGNRQLVQGCVDFYKQHFPDRFYLELLR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA   +LP+VATN  +FLS + ++AH++ +A+     +    RP+
Sbjct: 173  TGRPDEETYLHFAVELAEQQDLPVVATNEVVFLSPDLFDAHEIRVAIHDGYTLEDPRRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       +
Sbjct: 233  NYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM-----K 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +F
Sbjct: 288  ETEFLVMKSREGLEERLEFLFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KLIP DP
Sbjct: 408  MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +    E   AD  V  L+++   LEG  R+A  HA G+VI    ++   
Sbjct: 468  GMTLD-KAFKAEPALPELYEADEEVKELIDMCHILEGCTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  +     V +
Sbjct: 527  PIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPVQI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP +D  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + 
Sbjct: 587  ESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E I        H  +   L  T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDEKWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRAIFEEGAIKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  + ++PP +N+    F V 
Sbjct: 767  VSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVD 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +N  I Y + AIKGVG      I+EA +    F  L DFC+RVD K++N+RV+E L++AG
Sbjct: 827  ENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARVDLKRVNKRVIEKLIYAG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----KITLEKFS 944
            ALD  G  R  ++ SL++  K A    +       ++F    G  +D     +    +  
Sbjct: 887  ALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQTDMF----GVLTDAPEEVEHKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  PWPEKVWLEGERDTLGLYLTGHPINAYVKELNKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|253988140|ref|YP_003039496.1| DNA polymerase III subunit alpha [Photorhabdus asymbiotica subsp.
            asymbiotica ATCC 43949]
 gi|253779590|emb|CAQ82751.1| dna polymerase iii alpha subunit [Photorhabdus asymbiotica]
          Length = 1160

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1049 (41%), Positives = 622/1049 (59%), Gaps = 46/1049 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G    + ++ K+A    PA AITD  NL   + F   A  AG++
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTSPLVKKVAQLGMPAFAITDFTNLCGLVRFYGSAHGAGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  M+  L              ++ +L     GY  L  L+S  Y    G   
Sbjct: 64   PIIGA--DFYMESELLGDEYA--------NLTILARNNTGYHNLTLLISEAYQQGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL     EGLI+L+GG  G + +     +  + ++ L  +++ F D  Y+ L R
Sbjct: 114  PTIKQKWLVS-RKEGLILLSGGRMGDVGKFLLRGNRAMVDQCLEFYQEHFPDCYYLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D       V LA    LP+VATN+  F+ +ED++AH++ +A+     ++   RP+
Sbjct: 173  TGRVDDENYLHAAVALATEKNLPVVATNDVCFIDKEDFDAHEIRVAIHDGYTLADPKRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP+F   E       
Sbjct: 233  NYSPQQYLRSEQEMCELFSDIPEALENSVEIAKRCNVTIRLGEYFLPQFPTGEM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             EN L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TENYLIEKSKQGLEERLTFLYPDPEVRAEKRPEYDERLDVELRVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDLVIDHVADIYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFVAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     +D+
Sbjct: 527  PLYCDPEGLNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D++++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLNDNKSFDMLQRAETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDIQWQHESLQPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA K GI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKLGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLIDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA   D  F  L D C+RVD+KKLNRRV+E L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARKKDGYFRELFDLCARVDTKKLNRRVMEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A D  G  R  L+ SL++  K A    K       ++F    G  ++     + S  N S
Sbjct: 887  AFDRLGPHRAALMSSLEDALKAADQHAKAEAIGQTDMF----GVLAEAPEEVERSYANVS 942

Query: 950  -----VRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP+  Y K I R       ++   T RG    +  +V++
Sbjct: 943  QWPEQVVLDGERETLGLYLTGHPITRYLKEIERYTNGLRLKDVNPTPRGQVTTVVGLVLA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 SKVIMTKRGNRIGLCTLDDRSGRLEVMLF 1031


>gi|120599537|ref|YP_964111.1| DNA polymerase III subunit alpha [Shewanella sp. W3-18-1]
 gi|120559630|gb|ABM25557.1| DNA polymerase III, alpha subunit [Shewanella sp. W3-18-1]
          Length = 1157

 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1050 (41%), Positives = 617/1050 (58%), Gaps = 50/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      AGI+
Sbjct: 4    PRFVHLRVHSDFSMSDGVAKVKPILAQVEALGMAAVALTDQNNFCGLVKFYSGCHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-------SIVLLVSTAEGYQRLIELVSRMYL 121
            PIIG   D  MQ               VP       ++ ++     GYQ L +++S+ YL
Sbjct: 64   PIIGA--DFWMQ---------------VPGFEGEFCALTIIAMNNVGYQNLTQIISQAYL 106

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
              Q    V I   WL     EG+++L+G   G I +A    ++   E     ++  F +R
Sbjct: 107  RGQVAGRVVIDQEWLLTY-NEGILLLSGAKEGDIGKALLKGNNTQVESLCEFYQTHFAER 165

Query: 182  LYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ L R    D  R   + V LA     P+VATN  +FL  ED++AH++ +A+     +
Sbjct: 166  YFLELIRTGRPDEERYLHMAVALAQEKGFPVVATNQVVFLKPEDFDAHEIRVAIHDGFTL 225

Query: 241  SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +   RP+  +   YL++  EM  +F+D+P AL NTVEIA+RC+  ++++   LP F   +
Sbjct: 226  ADPRRPKKYSEQQYLRSEEEMCELFADIPAALSNTVEIAKRCNVTIRLYEYFLPNFPTGD 285

Query: 300  CDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                    E+ L + +  GLE RLA        +     +Y +RLD EL VI +M F GY
Sbjct: 286  M-----SIEDFLVDCSKKGLEERLAFLFPDPQVRAERRGEYDERLDIELQVINQMGFPGY 340

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMP
Sbjct: 341  FLIVMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ 
Sbjct: 401  DFDVDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 460

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP +P   ++ +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI  
Sbjct: 461  KLIPPEPGMTLA-KAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAP 519

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
              ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +  VK 
Sbjct: 520  TKITDFAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKN 579

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                V +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+R
Sbjct: 580  GRPPVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639

Query: 652  PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PGP+ + +V N   RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSG
Sbjct: 640  PGPLQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSG 699

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            Y+L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKS
Sbjct: 700  YTLGGADMLRRAMGKKKPEEMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKS 759

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN  
Sbjct: 760  HSAAYALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLTLIPPDVNKG 819

Query: 825  CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
               F V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E
Sbjct: 820  LFKFTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIE 879

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEK 942
             L+ AGALD  G  R  ++ +L    + A    K +     ++F        D K    +
Sbjct: 880  KLICAGALDSLGPHRASMMATLPEAMRAADQHAKAQAIGQHDMFGLLNSEPEDSKQQFVE 939

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                   +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV
Sbjct: 940  CIPWPDKIWLEGERETLGLYLTGHPINQYLKELKYYTSGRLKDVHPTERGKTVKAAGLVV 999

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++GS++G +T  + +   E   F
Sbjct: 1000 ATRVMLTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|300715411|ref|YP_003740214.1| DNA polymerase III subunit alpha [Erwinia billingiae Eb661]
 gi|299061247|emb|CAX58356.1| DNA polymerase III subunit alpha [Erwinia billingiae Eb661]
          Length = 1160

 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1057 (41%), Positives = 629/1057 (59%), Gaps = 62/1057 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G      ++ K A+   PAI ITD  NL   ++F   A   G++
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLVKKAASLGMPAIGITDYLNLCGLVKFYGGAHGQGVK 63

Query: 69   PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PIIG    +    M D+L               + +L +   GYQ L  L+S+ Y    G
Sbjct: 64   PIIGADFKVSSDAMGDDLG-------------QLTILAANNTGYQNLTLLISKAYQRGYG 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSSQVAEKRLLTFKKLFGDRLYV 184
                 I   WL E+G EGLI+L+GG  G + +     N +QVAE  L  +++ F +R Y+
Sbjct: 111  AAGPIIDRDWLIELG-EGLILLSGGRRGDVGQMLLRGNHAQVAEC-LAFYQQYFPERYYL 168

Query: 185  NLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
             L R    D   E+ V   V+LA  + +P+VATN   FL   D++AH++ +A+     + 
Sbjct: 169  ELIRTGRQDE--ETWVHAAVELAIANSIPVVATNEVCFLEAGDFDAHEIRVAIHDGFTLD 226

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               RP+  +P  YL+   EM  +FSD+PEAL N+VEIA+RC+  +++    LP+F   E 
Sbjct: 227  DPKRPKNYSPQQYLRTEEEMCELFSDIPEALANSVEIAKRCNVTIRLGEYFLPQFPTGEM 286

Query: 301  DDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                   E+ L  K+  GLE RL      A  +     +Y +RL+ ELNVI +M F GYF
Sbjct: 287  -----TTEDFLVMKSREGLEERLEFLFPDAAVRAEKRPEYDERLEIELNVINQMGFPGYF 341

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPD
Sbjct: 342  LIVMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPD 401

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ K
Sbjct: 402  FDVDFCMEKRDLVIEHVAEMYGRKAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISK 461

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            LIP +P   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI   
Sbjct: 462  LIPPEPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPT 520

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             ++   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K  
Sbjct: 521  QITDFAPLYCDENGNFPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINARRKKQG 580

Query: 596  ---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D++ IP DD +++ +L    T  +FQLES GM+  ++ ++PD  ED+IALV+L+RP
Sbjct: 581  EPPIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDSFEDMIALVALFRP 640

Query: 653  GPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY
Sbjct: 641  GPLQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGY 700

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL  AD+LRRAMGKK   EM KQ+  F  GA   GI   +AV IF+L+ KFA YGFNKSH
Sbjct: 701  SLGGADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGIEGELAVKIFDLVEKFAGYGFNKSH 760

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+  
Sbjct: 761  SAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGQ 820

Query: 826  VDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLE 883
              F V D+  I Y + AIKGVG       +EA  +   F  L D C+R D+KKLNRRVLE
Sbjct: 821  YQFHVNDDGEIVYGIGAIKGVGEGPIEAFIEARNEGGYFRELFDLCARTDTKKLNRRVLE 880

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-------AHEKGTFSD 936
             LV +GA D  G  R  L+ +L    K A    K       ++F       AH + +++D
Sbjct: 881  KLVMSGAFDRLGPHRAALMSALPEALKAADQHAKAEAIGQADMFGVLAEEPAHIEKSYAD 940

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNI 995
               ++++      V+ + E+  LG Y +GHP++ Y K I R +G    ++   T RG   
Sbjct: 941  ---IKRWP---EQVQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKMT 994

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 995  MAVGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|330432398|gb|AEC17457.1| DNA polymerase III subunit alpha [Gallibacterium anatis UMN179]
          Length = 1177

 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1055 (41%), Positives = 637/1055 (60%), Gaps = 59/1055 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS +S+++G   +  ++D+ A  Q  A+A+TD  N    ++F       G+
Sbjct: 23   APKFVHLRVHSDFSMIDGLPKVKTLVDECAKQQMVAMALTDFTNFCGLVKFYGATLGKGV 82

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-K 126
            +PI+G  + ++ ++          PF    S+ LL     GYQ +  L+SR Y   +G +
Sbjct: 83   KPIVGADVLVNSEE------LADEPF----SLTLLAKNNAGYQNITLLLSRAY--QRGYR 130

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            +   I   WL E   EG+I+L+GG  G + +     +   AE  L  +++ F D  Y+ +
Sbjct: 131  EYPMIDREWLIE-HAEGIIILSGGKDGDVGKFLVRGNQNAAENCLAFYQRYFPDHFYLAI 189

Query: 187  QRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D     Q+ V LA  H++PLVATN+ +FL EED+EAH++ +A+     +   +R
Sbjct: 190  SRTGRNDEEHYLQLAVNLAEQHQIPLVATNDVMFLCEEDFEAHEIRVAIHDGYTLDDPNR 249

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +P  Y ++  EM  +F+DLP+ALEN+V IA+RC+  +++    LP+F   +     
Sbjct: 250  PKKYSPQQYFRSEQEMCELFADLPQALENSVYIAQRCNVTIRLGQYFLPQFPTGDL---- 305

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA     +    Q    Y +RL+ EL VI +M F GYFLIV 
Sbjct: 306  -STEDYLIQQAKTGLEQRLAVLFPDEQERQQKRAKYDERLETELKVINQMGFPGYFLIVM 364

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K NNIPVGPGRGSGAGS+ AY++ ITD+DPL+F LLFERFLNP+R+SMPDFD+D
Sbjct: 365  EFIQWSKDNNIPVGPGRGSGAGSLVAYSIRITDLDPLQFDLLFERFLNPERVSMPDFDVD 424

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 425  FCMDGRDRVIEHVAQMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLIPP 484

Query: 482  DPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            DP   ++LQ   D + +  EA  +D  V  L+++ +KLEG+ R+A  HA G+VI    ++
Sbjct: 485  DPG--MTLQKAFDAEPKLVEAYNSDEEVKELIDMGRKLEGITRNAGKHAGGVVISPSKIT 542

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVK 595
               P+Y D     PVT F+   +E AGL+KFDFLGL+TLT++Q ++D + +R       +
Sbjct: 543  DFSPIYCDSEGKHPVTHFDKSDVEYAGLVKFDFLGLRTLTIIQWAVDMINERMRREGKPE 602

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D+  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+
Sbjct: 603  IDIHHIPLDDEKSFKLLLDAQTTAVFQLESRGMKDLIRRLKPDCFEDIIALVALFRPGPL 662

Query: 656  DNIVVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
             + +V N   RK+G+E+I          S+ P++DP    T G+I+YQEQVMQIAQ+L+G
Sbjct: 663  QSGMVDNFIRRKHGEEEISYPDAEYQHQSLKPILDP----TYGIILYQEQVMQIAQVLAG 718

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            Y+L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKS
Sbjct: 719  YTLGGADLLRRAMGKKKPEEMAKQRSVFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKS 778

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT W+K H+P EF+AA MT EMD VEKI  F  ++ +  ++++PP +NT 
Sbjct: 779  HSAAYALVSYQTLWLKAHFPAEFMAAVMTSEMDKVEKIVNFYDESLRMGLKVVPPDINTG 838

Query: 825  CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVL 882
               F V +   I Y L AIKGVG     +I+EA ++   F  L D C+RVD +K+NRR  
Sbjct: 839  KYGFSVNEKGEIVYGLGAIKGVGEAPVENIIEARTSGGLFRDLFDLCARVDLRKINRRTF 898

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            ++L+ AGALD  G  R  +  +L++  K +    K+      ++F    G  +      +
Sbjct: 899  DNLIKAGALDKLGPHRAAIALNLEDALKASDQHAKDEALGQTDMF----GVLASSPKQVE 954

Query: 943  FSVENS-----SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
             +  N+      +  + EQ  LG Y S HP+  Y   L     +  E SV T RG +  +
Sbjct: 955  QAYANTPKWTEKMVLDGEQETLGLYLSSHPISRYLKELSHYSNRLSEVSV-TRRGESCTV 1013

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +VV+ +   T++G+R+G +T  + +   +   F
Sbjct: 1014 SGLVVNFRSLVTKRGNRLGILTLDDRSARMDITLF 1048


>gi|85713117|ref|ZP_01044151.1| DNA polymerase III subunit alpha [Idiomarina baltica OS145]
 gi|85693065|gb|EAQ31029.1| DNA polymerase III subunit alpha [Idiomarina baltica OS145]
          Length = 1159

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1041 (41%), Positives = 620/1041 (59%), Gaps = 53/1041 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++HS +S+++G   +  I  ++A    PA+A+TD  N    +++   A + G++P
Sbjct: 6    SFVHLRIHSDFSMVDGLTKVKPICQRVADMNMPAMALTDQMNFCGLVQYYGAAHSQGLKP 65

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG  L +           G  P   +  +  L    +GYQ++I+L+S+ YL    +   
Sbjct: 66   LIGADLWV----------WGDYPEGEIFRLTALAMNNDGYQQIIQLISKAYLRGHVQGKP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I  +WL +    G+I+L+G   G I RA      +  ++ L  +K+ F +R Y+ L R 
Sbjct: 116  VIDKAWLAQ-HNAGIILLSGAREGDIGRALLKGHQEPLQESLAFYKQYFPERFYLELIRT 174

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  +       VQLA  H+LP+VATN  +FL EE++EAH++ +A+     +  K RP+ 
Sbjct: 175  GRAEEEAYLHSAVQLAAEHDLPVVATNEVVFLEEENFEAHEIRVAIHDGYQLGDKRRPKK 234

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +P  YL++  EM  +F+DLPEALENTVEIA+RC+  +++    LP F   +       E
Sbjct: 235  YSPQQYLRSAEEMHELFADLPEALENTVEIAKRCNVTIRLGEYFLPAFPTGDLT-----E 289

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             + L   +  GLE RL         +      Y +RL  EL+VI +M F GYFLIV +FI
Sbjct: 290  GDYLVKVSREGLEERLEFLFPDEAERQAKRPPYDERLQTELDVINQMGFPGYFLIVMEFI 349

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            QW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC 
Sbjct: 350  QWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 409

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRRDEVI +V   YG + V+QIITFG++ AKA++RDVGR L  PY  VD + KL+P DP 
Sbjct: 410  DRRDEVIDHVAELYGRDAVSQIITFGTMAAKASIRDVGRVLGHPYGFVDGISKLVPGDPG 469

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              ++ +A        E   AD  V  L++ ++ LEG+ R+A  HA G+VI    ++    
Sbjct: 470  MTLA-KAFEQVPELGERYDADEEVKELIDFARILEGVTRNAGKHAGGVVISPTTITDFAA 528

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLS 599
            +Y D     PVTQF+   +E AGL+KFDFLGL+TLT++Q +LD +  R  +     +D++
Sbjct: 529  LYCDDEGKNPVTQFDKNDVESAGLVKFDFLGLRTLTIIQWALDMVNARKKEAGEPLIDIN 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I  +D + + +L    T  +FQLES+GM++ +  + PD  EDIIALV+L+RPGP+++ +
Sbjct: 589  AISLNDKQCFDVLKRAETTAVFQLESAGMKKLILRLLPDSFEDIIALVALFRPGPLESGM 648

Query: 660  VYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            V N  +RK+G+EK+        H  ++P+L+ T GVI+YQEQVMQ+AQ+++GYSL  AD+
Sbjct: 649  VDNFIDRKHGREKVSYPDETYQHECLEPILEPTYGVILYQEQVMQVAQVMAGYSLGGADL 708

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  EEM KQ+E F  GA  N I   +A+ IF+L+ KFA YGFNKSH+AAYA++
Sbjct: 709  LRRAMGKKKPEEMAKQREVFREGAHNNNIDPELAMKIFDLVEKFAGYGFNKSHSAAYALV 768

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQT WMKTHYP EF+AA M+ +MDN +KI     +  +  + ++PP VN     F V D
Sbjct: 769  SYQTLWMKTHYPAEFMAAVMSADMDNTDKIVTLADECERMGLVLLPPDVNKGVYKFTVDD 828

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
              R+ Y + AIKGVG      I+EA  +  PF  L DFC RVD KKLN+RVLE L+ AGA
Sbjct: 829  EQRVVYGIGAIKGVGEAPIEAILEARNEGGPFTDLFDFCCRVDLKKLNKRVLERLIRAGA 888

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN--- 947
            +D  G  R  L+ SL+   + A    +  +    ++F          +T E  +VE+   
Sbjct: 889  MDSLGPHRASLMASLEKAMRQAVQHRQAESIGQADMFG--------VLTTEPEAVEHEFE 940

Query: 948  ------SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                   +V  E E+  LG Y +GHP++ ++  L+   +        T +   + +A +V
Sbjct: 941  KVKPWPEAVWLEGERETLGLYLTGHPINRFRAELQHYVVGQLANVNETRKNEYVGVAGLV 1000

Query: 1002 VSKQQKKTRKGSRIGWVTFSE 1022
            +  +    ++G R   VT  +
Sbjct: 1001 IDVRVITNKRGQRFAIVTLDD 1021


>gi|253999458|ref|YP_003051521.1| DNA polymerase III subunit alpha [Methylovorus sp. SIP3-4]
 gi|253986137|gb|ACT50994.1| DNA polymerase III, alpha subunit [Methylovorus sp. SIP3-4]
          Length = 1149

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/978 (43%), Positives = 616/978 (62%), Gaps = 35/978 (3%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P+F+HL+ HS YS+++G + + + +   AAD+ PA+A+TD +NLF A++F + A   G++
Sbjct: 4   PTFIHLRCHSEYSVVDGTVRIGDYVKAAAADRMPALALTDLSNLFGAVKFYKSARGKGLK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           P++GC L ++ + N         P+     ++LL  T  GY +L EL+SR YL +Q +  
Sbjct: 64  PVLGCDLWLENETNRDQ------PY----RLLLLCQTHAGYLKLCELLSRAYLENQHRGR 113

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I   WL E G EGLIML+G  +G + +A    + Q A      +  LF +R Y+ LQR
Sbjct: 114 AEIKRQWLVEAGGEGLIMLSGAMAGDVGQAILQGNQQAALALAQQWAALFPNRFYIELQR 173

Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                  +  S+ + LA   +LP+VAT+   F+  +D++AH+  + +A   V++   RP+
Sbjct: 174 AGHAQQEFYISRALALAGDLDLPVVATHPVQFMQADDFKAHEARVCIAEGYVLADNRRPK 233

Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             TP+ + K ++EM ++F+D+P+AL N+VEIA+RC+  L +    LP+F     + +   
Sbjct: 234 HFTPEQFFKTQAEMAALFADVPQALANSVEIAKRCNLTLTLGKNYLPQFPTPNGESL--- 290

Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +  L  +A  GLE RL         +      Y  RL+FE N+I +M F GYFLIVADF
Sbjct: 291 -DEYLVVQAKLGLEKRLQVLYPDEAVRDAKRPVYLTRLEFETNIIIQMGFPGYFLIVADF 349

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           I WAK N +PVGPGRGSGAGSV AY+L ITD+DPL+++LLFERFLNP+R+SMPDFDIDFC
Sbjct: 350 INWAKNNGVPVGPGRGSGAGSVVAYSLGITDLDPLQYALLFERFLNPERVSMPDFDIDFC 409

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
           Q+ RD VI YV++KYG   V+QI TFG++ AKA +RDVGR L +P++ VD + KLIPN+ 
Sbjct: 410 QEGRDRVIDYVKHKYGLASVSQIATFGTMAAKAVIRDVGRVLDLPFNFVDGIAKLIPNEL 469

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              +S  A+  + + +E R  +  V+ LLE++ +LEGL R+   HA G++I    +S   
Sbjct: 470 GITLS-DALEKEPQLKERREQEEEVNELLELALRLEGLTRNIGMHAGGVLISPGKISDFS 528

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK----VDL 598
           P+Y     +  V+Q++   +E  GL+KFDFLGL+TLT+L  +L+   AQR +K    +D 
Sbjct: 529 PIYCQQNGESLVSQYDKDDVEAVGLVKFDFLGLRTLTILAMALENANAQRALKELPPLDF 588

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             +P +D  TY LL +  T  +FQLES GM+  L+  +PDC EDIIALV+LYRPGP+D I
Sbjct: 589 ETLPINDKPTYQLLKSANTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYRPGPMDLI 648

Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             +  RK+G++++   HP  +P+LKET G+++YQEQVMQIAQ+++GYSL  AD+LRRAMG
Sbjct: 649 PDFCRRKHGQQRVEYPHPATEPILKETYGIMVYQEQVMQIAQVVAGYSLGGADLLRRAMG 708

Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           KK KEEMD Q+  F+ GA KNG  +  A  +F+L+ KFA YGFNKSHAAAYA+++Y TA+
Sbjct: 709 KKKKEEMDAQRAVFVEGAVKNGTPEKQAAELFDLMEKFASYGFNKSHAAAYALVAYHTAY 768

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYY 837
           +K HYP  FLAA+M+ +M+N + +  F  D     ++++ P +N     FK + D ++ Y
Sbjct: 769 LKAHYPAAFLAATMSADMNNTDSVHIFYDDCAANGVEVLAPDINQSEFRFKPISDKQVLY 828

Query: 838 SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            L A+KG G      I+ A  A+ PF  L DFC R+D +K+NRRV+ESL+ AGA D    
Sbjct: 829 GLGAVKGTGWAAIEVILAAREAEGPFKDLFDFCRRLDLRKVNRRVIESLIRAGAFDKLEP 888

Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFEN 954
           +R  LL  +      A+  +    +   ++F    G  SD +  TL K +  +   + + 
Sbjct: 889 NRAALLAGVSLAISAAE--QSGAASGQNSLF----GEMSDSVAHTLPKVNAWSEQEKLQQ 942

Query: 955 EQRVLGFYFSGHPLDVYK 972
           E+  LGFYFSGHP + YK
Sbjct: 943 EKSALGFYFSGHPYEGYK 960


>gi|198283301|ref|YP_002219622.1| DNA polymerase III subunit alpha [Acidithiobacillus ferrooxidans ATCC
            53993]
 gi|198247822|gb|ACH83415.1| DNA polymerase III, alpha subunit [Acidithiobacillus ferrooxidans
            ATCC 53993]
          Length = 1167

 Score =  777 bits (2006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1041 (42%), Positives = 639/1041 (61%), Gaps = 41/1041 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            ++P FVHL VHS YSL +G + +  +  + A    PA+AITD  NLF+ ++F   A   G
Sbjct: 3    RTPQFVHLHVHSEYSLEDGIIPVKALARRCAERGMPAVAITDHGNLFALVKFYNAARGQG 62

Query: 67   IQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            ++P+IG ++ + D+ +            P  P S+VLL     GY+ L  L+SR YL   
Sbjct: 63   VKPLIGSEVWVHDVAE------------PERPVSLVLLCMDKTGYRNLSRLLSRAYLEGS 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 +I ++WL E  ++GLI L+    G I RA   +  Q AE R   + +LF +R Y+
Sbjct: 111  RHGRPQIDVAWL-EGSSDGLIALSAAGQGEIGRALQRHPQQ-AESRARYYARLFPERFYL 168

Query: 185  NLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR+   ++    Q  V LA   +LPLVATNN+ FL   D+ A D    ++    +   
Sbjct: 169  EVQRNGEAEQEALVQATVALAEKLDLPLVATNNAHFLDAADFAAFDARQCISAGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  TP+H L +  EM   F+DLPEA +NTVEIARRC+  L +    LP +       
Sbjct: 229  RRPRRFTPEHRLPDPEEMRERFADLPEACDNTVEIARRCNMELVLGHYALPDYPIPANQS 288

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +    +  L + A  GL+ RL +  I  G     Y +RL  E+ VI +M F GYFLIVAD
Sbjct: 289  V----DEYLHDAAQKGLQERLQELRIT-GDATLPYHERLLREVGVIQQMGFPGYFLIVAD 343

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DP+   LLFERFLNP+R+SMPDFD+DF
Sbjct: 344  FIQWAKNNGVPVGPGRGSGAGSLVAYALRITDLDPIGNGLLFERFLNPERVSMPDFDVDF 403

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D+RD VI+YV +KYG +RV QIITFG+++A+A +RDVGR L +PY  VD+L KL+P D
Sbjct: 404  CMDQRDRVIQYVADKYGRDRVGQIITFGTMKARAVVRDVGRVLGLPYGFVDQLAKLVPGD 463

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                ++ +A+ +    R  +  +  V  LL+I+ +LEGL RHASTHA G+VI   PL+  
Sbjct: 464  LGMTLA-KALEESEELRRRQAEEDDVRDLLDIALRLEGLPRHASTHAGGVVISPEPLADR 522

Query: 543  VPMYRD-VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKV 596
            +P++ D       VTQ +   +EK GL+KFDFLGL+TLT++  ++  +     A     V
Sbjct: 523  LPLFNDGSEGGGNVTQLDKDDVEKMGLVKFDFLGLRTLTIIDMAVKLINADAAAAGRAPV 582

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+  +P DD  T+ LL +  T  +FQLESSGMR  +  +QPD  EDI+ALV+L+RPGP+ 
Sbjct: 583  DIQQLPLDDAATFALLKSTETAAVFQLESSGMRDLVRRLQPDTFEDIVALVALFRPGPLQ 642

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +V  +  RK+GK ++  +HP + P+L+ET GVI+YQEQVMQ AQ L+GYSL  AD+LR
Sbjct: 643  SGMVDDFIARKHGKAQVTYLHPDLAPILRETYGVIVYQEQVMQSAQALAGYSLGGADLLR 702

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ+  F+ GA KNG++   A  IF+L+ KFA+YGFNKSH+AAYA++SY
Sbjct: 703  RAMGKKKPEEMAKQRSIFLEGAHKNGLAADQAGAIFDLMEKFAEYGFNKSHSAAYALVSY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDN 833
            QTA++K HYP  F++A +T +MD+ +K+     +  +  ++I PPSV    ++F+  GD+
Sbjct: 763  QTAYLKAHYPQFFMSAVLTADMDHTDKVVAMIAECARMGLRIAPPSVQHSVLEFRPEGDD 822

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I + L AIKG+G    + I++A     F +L D   RVD++K+NRR LE+L+ AGA+D 
Sbjct: 823  HIRFGLGAIKGLGRAAIQAILDARRGGAFLNLFDLLCRVDTQKINRRALEALIRAGAMDD 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG--TFSDKITLEKFSVENSSVR 951
            +G SR  L+ S+D   + A   + ++ +  E++F+ ++        ++ E +S+  +   
Sbjct: 883  WGVSRASLIASVDGCMEAAAQFQSSQASLQESLFSGQEALRVAPPLVSAEAWSLTET--- 939

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               E+  LGFY SGHP+D  +  L  +G     +      G+ + +A +VV+++  +T++
Sbjct: 940  LRQERETLGFYLSGHPMDSLRDDLTALGTIPLGDVAV---GSTVLVAGLVVARRSTRTKR 996

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G RI ++T  +     E   F
Sbjct: 997  GDRIYFLTLDDGQGRLEVVVF 1017


>gi|78222430|ref|YP_384177.1| DNA polymerase III subunit alpha [Geobacter metallireducens GS-15]
 gi|78193685|gb|ABB31452.1| DNA polymerase III, alpha subunit [Geobacter metallireducens GS-15]
          Length = 1155

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1042 (41%), Positives = 629/1042 (60%), Gaps = 30/1042 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA+ L +++ K      PA+AITD   +F A+EF  K    G++P
Sbjct: 2    SFVHLHLHTQYSLLDGAIRLGDLIKKAKDTDMPAVAITDHGVMFGAMEFYLKCKDKGVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128
            IIG ++ I          +G         ++LL     GY+ L +LVS  +   +G    
Sbjct: 62   IIGSEVYIAPGSRFVKEVKGGEAGAGY-HLLLLCENMTGYRNLSKLVSVGF--KEGFYYK 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT--FKKLFGDRLYVNL 186
             RI    L +  +EGLI L+    G +  A+     ++ E   +   +  LF DR Y+ L
Sbjct: 119  PRIDKEVLAQY-SEGLICLSACLKGEV--AYLCERDRMEEAIGVARWYADLFPDRYYIEL 175

Query: 187  QRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q +   ++ + ++ ++++A    LPLVATN+  +L+ ED  AH+VL+ +     ++   R
Sbjct: 176  QENGLAEQDKANKGLLEVAREVGLPLVATNDCHYLNREDARAHEVLLCIQTGKTMNDSAR 235

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R + D  Y+K   EM + F   PEA+ NTV+IA RC+          P+F       + 
Sbjct: 236  MRFSTDEFYVKTPEEMAAAFHYAPEAVSNTVKIAERCNLDFDFKTYYFPQFDPP----VG 291

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKG----YHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +  +  L + A  GLE RL +  +          Q Y +RL  EL+ I +M F GYFLIV
Sbjct: 292  QTLDQMLEDAARKGLEFRLKEIRLKNPDMSPEQEQKYWERLRIELDCITQMGFPGYFLIV 351

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFI WAK + IPVGPGRGS AGS+ AY++ ITD+DPL ++LLFERFLNP+R+SMPD D+
Sbjct: 352  ADFINWAKDHGIPVGPGRGSAAGSLVAYSIRITDLDPLPYNLLFERFLNPERISMPDIDV 411

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQDRR+EVI YV  KYG ++V QIITFG++ A+A +RDVGRAL M Y  VD++ KL+P
Sbjct: 412  DFCQDRREEVIHYVTGKYGRDQVCQIITFGTMSARAVIRDVGRALDMTYGDVDKIAKLVP 471

Query: 481  NDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                  + L+ AIA + R +EA  AD  V  LLEI  +LEGL RHASTHAAG+V+  + L
Sbjct: 472  E--VLGIKLKDAIAQEPRLKEASEADSRVKELLEIGLRLEGLARHASTHAAGVVVAPKVL 529

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDL 598
             +  P+Y+D ++    TQ++MK++EK GL+KFDFLGLK LT++  ++  + A +    D+
Sbjct: 530  EEFCPVYKDQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIHNAVKIIRAGKDPNFDI 589

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +  DD  +Y L++   T G+FQLESSGM+  L  ++P C ED+IA  +LYRPGP+ + 
Sbjct: 590  AALRDDDRASYDLISAGNTTGVFQLESSGMKDMLVKLKPSCFEDVIAACALYRPGPLGSG 649

Query: 659  VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V  + +RK+G++K+V   P ++P+LK+T GVI+YQEQVMQIA+ L+GYSL  AD+LRRA
Sbjct: 650  MVDDFIDRKHGRKKVVYDLPQLEPILKDTYGVIVYQEQVMQIARTLAGYSLGGADLLRRA 709

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK   EM KQ++ F+ GA   G+    A  IF+L+AKFA+YGFNKSH+AAYA+++YQT
Sbjct: 710  MGKKDPAEMAKQRDIFLEGAKNGGVDLQKAGAIFDLMAKFAEYGFNKSHSAAYALVAYQT 769

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K HYPVEFLAA +T +M N +K+ K   D R+  I+I+PP +N   + F+V  N I 
Sbjct: 770  AYLKAHYPVEFLAALLTEDMGNTDKVVKTISDCREMGIEILPPDINDSHLSFRVLGNSIR 829

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            + L A+K VG      I+EA  +  F  L DFC RVD  K+N+RV+ESLV  GA D  G 
Sbjct: 830  FGLGAVKNVGEGAIEAIIEARQEGDFKDLFDFCERVDLHKVNKRVVESLVKCGAFDSTGG 889

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-----GTFSDKITLEKFSVENSSVR 951
             R QL+ +L++     Q +++ R +   ++F  E+     G    K+ L      +  ++
Sbjct: 890  RRSQLMSALEDAMAIGQKIQQERESAQVSLFGVEEIVRTNGNGKGKVQLPDIPEWDDKLK 949

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               E+  LGF+ +GHPL  Y+  +++               + ++L  +V S ++  T+K
Sbjct: 950  LGLEKEALGFFITGHPLGRYEKEIKRFANVDTATLDERADKSEVKLCGIVTSLKELITKK 1009

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G R+ + T  +     E   FP
Sbjct: 1010 GDRMAFATLEDLLGSVEVVVFP 1031


>gi|218665927|ref|YP_002425889.1| DNA polymerase III, alpha subunit [Acidithiobacillus ferrooxidans
            ATCC 23270]
 gi|218518140|gb|ACK78726.1| DNA polymerase III, alpha subunit [Acidithiobacillus ferrooxidans
            ATCC 23270]
          Length = 1166

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1041 (42%), Positives = 639/1041 (61%), Gaps = 41/1041 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            ++P FVHL VHS YSL +G + +  +  + A    PA+AITD  NLF+ ++F   A   G
Sbjct: 2    RTPQFVHLHVHSEYSLEDGIIPVKALARRCAERGMPAVAITDHGNLFALVKFYNAARGQG 61

Query: 67   IQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            ++P+IG ++ + D+ +            P  P S+VLL     GY+ L  L+SR YL   
Sbjct: 62   VKPLIGSEVWVHDVAE------------PERPVSLVLLCMDKTGYRNLSRLLSRAYLEGS 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 +I ++WL E  ++GLI L+    G I RA   +  Q AE R   + +LF +R Y+
Sbjct: 110  RHGRPQIDVAWL-EGSSDGLIALSAAGQGEIGRALQRHPQQ-AESRARYYARLFPERFYL 167

Query: 185  NLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR+   ++    Q  V LA   +LPLVATNN+ FL   D+ A D    ++    +   
Sbjct: 168  EVQRNGEAEQEALVQATVALAEKLDLPLVATNNAHFLDAADFAAFDARQCISAGFTLDDP 227

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  TP+H L +  EM   F+DLPEA +NTVEIARRC+  L +    LP +       
Sbjct: 228  RRPRRFTPEHRLPDPEEMRERFADLPEACDNTVEIARRCNMELVLGHYALPDYPIPANQS 287

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +    +  L + A  GL+ RL +  I  G     Y +RL  E+ VI +M F GYFLIVAD
Sbjct: 288  V----DEYLHDAAQKGLQERLQELRIT-GDATLPYHERLLREVGVIQQMGFPGYFLIVAD 342

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DP+   LLFERFLNP+R+SMPDFD+DF
Sbjct: 343  FIQWAKNNGVPVGPGRGSGAGSLVAYALRITDLDPIGNGLLFERFLNPERVSMPDFDVDF 402

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D+RD VI+YV +KYG +RV QIITFG+++A+A +RDVGR L +PY  VD+L KL+P D
Sbjct: 403  CMDQRDRVIQYVADKYGRDRVGQIITFGTMKARAVVRDVGRVLGLPYGFVDQLAKLVPGD 462

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                ++ +A+ +    R  +  +  V  LL+I+ +LEGL RHASTHA G+VI   PL+  
Sbjct: 463  LGMTLA-KALEESEELRRRQAEEDDVRDLLDIALRLEGLPRHASTHAGGVVISPEPLADR 521

Query: 543  VPMYRD-VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKV 596
            +P++ D       VTQ +   +EK GL+KFDFLGL+TLT++  ++  +     A     V
Sbjct: 522  LPLFNDGSEGGGNVTQLDKDDVEKMGLVKFDFLGLRTLTIIDMAVKLINADAAAAGRAPV 581

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+  +P DD  T+ LL +  T  +FQLESSGMR  +  +QPD  EDI+ALV+L+RPGP+ 
Sbjct: 582  DIQQLPLDDAATFALLKSTETAAVFQLESSGMRDLVRRLQPDTFEDIVALVALFRPGPLQ 641

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +V  +  RK+GK ++  +HP + P+L+ET GVI+YQEQVMQ AQ L+GYSL  AD+LR
Sbjct: 642  SGMVDDFIARKHGKAQVTYLHPDLAPILRETYGVIVYQEQVMQSAQALAGYSLGGADLLR 701

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ+  F+ GA KNG++   A  IF+L+ KFA+YGFNKSH+AAYA++SY
Sbjct: 702  RAMGKKKPEEMAKQRSIFLEGAHKNGLAADQAGAIFDLMEKFAEYGFNKSHSAAYALVSY 761

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDN 833
            QTA++K HYP  F++A +T +MD+ +K+     +  +  ++I PPSV    ++F+  GD+
Sbjct: 762  QTAYLKAHYPQFFMSAVLTADMDHTDKVVAMIAECARMGLRIAPPSVQHSVLEFRPEGDD 821

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I + L AIKG+G    + I++A     F +L D   RVD++K+NRR LE+L+ AGA+D 
Sbjct: 822  HIRFGLGAIKGLGRAAIQAILDARRGGAFLNLFDLLCRVDTQKINRRALEALIRAGAMDD 881

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG--TFSDKITLEKFSVENSSVR 951
            +G SR  L+ S+D   + A   + ++ +  E++F+ ++        ++ E +S+  +   
Sbjct: 882  WGVSRASLIASVDGCMEAAAQFQSSQASLQESLFSGQEALRVAPPLVSAEAWSLTET--- 938

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               E+  LGFY SGHP+D  +  L  +G     +      G+ + +A +VV+++  +T++
Sbjct: 939  LRQERETLGFYLSGHPMDSLRDDLTALGTIPLGDVAV---GSTVLVAGLVVARRSTRTKR 995

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G RI ++T  +     E   F
Sbjct: 996  GDRIYFLTLDDGQGRLEVVVF 1016


>gi|189425779|ref|YP_001952956.1| DNA polymerase III subunit alpha [Geobacter lovleyi SZ]
 gi|189422038|gb|ACD96436.1| DNA polymerase III, alpha subunit [Geobacter lovleyi SZ]
          Length = 1179

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1041 (41%), Positives = 630/1041 (60%), Gaps = 23/1041 (2%)

Query: 6    EKSP--SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            E SP   FVHL +HS YSLL+GA+ + +++ K    Q PA+AITD  N+F A+EF  K  
Sbjct: 5    ENSPVTPFVHLHLHSQYSLLDGAIRIEDLVSKAKQYQMPALAITDHGNMFGAVEFYLKCK 64

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGI+PIIGC+L I         ++G +       ++LL    EGY+ L  L S  Y   
Sbjct: 65   KAGIKPIIGCELYIAPDSRFSKDSKGISD--AAYHLILLCQNLEGYKNLSYLTSAGY--K 120

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +G          L E  +EGLI L+    G +         + A +    + +LF DR Y
Sbjct: 121  EGFYYRPRVDRALLEQHSEGLIALSACLKGEVAMQCGRGKMEDALETARWYSQLFPDRYY 180

Query: 184  VNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q +   ++   +Q ++++A    LPLVATN+  +L+ ED +AH+VL+ +     +S 
Sbjct: 181  IEIQENTLPEQDVVNQRLLEVARELNLPLVATNDCHYLNREDAKAHEVLLCIQTGKTMSD 240

Query: 243  KDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI-LPRFIEKEC 300
                R + D  Y+K   EM + F   PEA+ NTV IA RC+  L +      P F   E 
Sbjct: 241  PTHMRFSADEFYVKTPEEMAAAFHYAPEAIANTVAIAERCNLELPLEKEYYFPHFEPPE- 299

Query: 301  DDIQKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                K  ++ L  +AV+GLE RL    A+     G   Q Y  RL  EL+ I +MKF  Y
Sbjct: 300  ---GKTHDDMLEEQAVSGLEERLITIRAKYPDMTGEQVQAYHDRLRTELDCIRQMKFPAY 356

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI WAK+  IPVGPGRGS AGS+ AYA+ ITD+DPL ++LLFERFLNP+R+SMP
Sbjct: 357  FLIVADFINWAKRQGIPVGPGRGSAAGSLVAYAIKITDLDPLPYNLLFERFLNPERISMP 416

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DFCQD+R++VI YV  KYG ERV QIITFG+++AKA +RDVGRAL M Y  VD++ 
Sbjct: 417  DIDVDFCQDQREKVIEYVVQKYGRERVCQIITFGTMKAKAVVRDVGRALDMAYGDVDKIA 476

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP+D    +  +AI  + + +E   ADP V +LLE +  LEGL RHA THAAG+V+  
Sbjct: 477  KLIPDDLKMTIE-KAIKQEPQLKEMAAADPKVAQLLETANCLEGLARHAGTHAAGVVVAP 535

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595
              L + +P+Y+D ++    TQ++MK++E  GL+KFDFLGLK LT++Q ++  + + +   
Sbjct: 536  NQLEEYLPVYKDQKTGGINTQYSMKYVEMVGLVKFDFLGLKNLTVIQNAVRMIREGQNPD 595

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             D++ +  DD  +Y L+T   T GIFQLESSGM++ L  ++P C ED+IA  +LYRPGP+
Sbjct: 596  FDITRLRDDDQASYDLITAGNTTGIFQLESSGMKEMLVKLKPSCFEDVIAACALYRPGPL 655

Query: 656  DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               +V  +  RK+G++K+V   P ++P+LK+T GVI+YQEQVMQI++ L+GYSL  AD+L
Sbjct: 656  GCGMVDEFIERKHGRQKVVYDLPQLEPILKDTYGVIVYQEQVMQISRSLAGYSLGRADLL 715

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK    M K+KE F+ GA   G+    A  IF+ +AKFA+YGFNKSH+AAYA+I+
Sbjct: 716  RRAMGKKDPAVMAKEKEPFLEGAKAQGLDIKKAEAIFDQMAKFAEYGFNKSHSAAYALIA 775

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K HYPVEF+AA ++ +MD+ +K+ K   D R+  I+++PP +NT    F V   
Sbjct: 776  YQTAYLKAHYPVEFMAALLSCDMDSTDKVLKSISDCREQGIEVLPPDINTSGQSFTVSGK 835

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             + + L A+KGVG      I+EA AD PF  + DFC RVD +++N+RV+E+LV  GA D 
Sbjct: 836  SMRFGLGAVKGVGGGAVESIIEARADGPFTDIYDFCERVDLRRVNKRVMEALVKCGAFDS 895

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE--NSSVR 951
                R  L+ +LD+     Q  ++ R +   ++F       + +   +   +E  +   +
Sbjct: 896  LHKHRAPLMAALDDATTAGQRFQEERDSAQVSLFGDMPTATATRSGRKLPDIEEWHDKEK 955

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               E+  LGF  +GHPLD Y   ++++                +R+  +V S ++  T+K
Sbjct: 956  LGYEKEALGFLITGHPLDRYASDIKRLASAEIARLPEFPDNCEVRVCGIVTSLKEIITKK 1015

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G R+G+VT  +   + E   F
Sbjct: 1016 GDRMGFVTIEDLTGQIEITVF 1036


>gi|197286116|ref|YP_002151988.1| DNA polymerase III subunit alpha [Proteus mirabilis HI4320]
 gi|194683603|emb|CAR44494.1| DNA polymerase III, alpha chain [Proteus mirabilis HI4320]
          Length = 1160

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1049 (40%), Positives = 622/1049 (59%), Gaps = 46/1049 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G      ++ K+A+   PA AITD  NL   ++F   A  AGI+
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTGPLVKKVASLGMPAFAITDFTNLCGLVKFYGAAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D+ ++  L               + +L     GYQ L  L+S  Y    G   
Sbjct: 64   PIVGA--DVYLETELLGDEYAH--------LTILARDNVGYQNLTLLISEAYKHGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL     EGL++L+GG  G + +     +  + E+ L  ++  F D  Y+ L R
Sbjct: 114  PVIKQEWLTTY-KEGLLLLSGGRMGDVGKFLLRGNRALVEQCLEYYQTHFPDSYYLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +     + V LA    LP+VATN+  FL  +D++AH++ +A+     +S   RP+
Sbjct: 173  TGRPDEESYLHEAVALASEKGLPVVATNDVRFLDSDDFDAHEIRVAIHDGFTLSDPKRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y++   EM  +F+D+PEALEN+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  HYSPQQYMRTEEEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLIKKSKEGLEERLAFLFPDPQEREKRRPEYDERLEIELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDRVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKSLIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     VD+
Sbjct: 527  PLYCDPEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKSLEPVDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S I   D  ++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  SAISLTDQRSFDMLQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G E+I        H  + P+L+ T GVI+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGVEEISYPDVKWQHESLQPVLEPTYGVILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F +GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEAGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I+EA      F  + D C+R ++KKLNRRV+E L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIVEARQQGGHFKDIFDLCARTETKKLNRRVMEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947
            A D  G  R  L+ SL++  K A    K       ++F    G  ++     + S  N  
Sbjct: 887  AFDKLGPHRAALMSSLEDALKAADQHAKAEAIGQSDMF----GVLAEAPEQVERSYANVP 942

Query: 948  ---SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  E E+  LG Y +GHP+  Y K I R       ++ V T RG  +++A +V++
Sbjct: 943  KWPDQVVLEGERETLGLYLTGHPITRYLKEIERYAAGTRLKDLVPTPRGQMVKVAGLVLA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 SKVFTTKRGNRIGICTLDDRSGRLEIMLF 1031


>gi|317493173|ref|ZP_07951596.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918833|gb|EFV40169.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 1160

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1051 (40%), Positives = 627/1051 (59%), Gaps = 50/1051 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G   +  ++ K+AA   PA AITD  N+   ++F   A  AGI+
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKVGPLVKKVAALGMPAFAITDHTNMCGLVKFYGSAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D+ ++  L            +  + +L +   GYQ L  L+S  Y    G   
Sbjct: 64   PIIGA--DVFVKSELLGDE--------LSHLTILAANNTGYQNLTLLISHAYQRGYGADG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+GG  G + +     + Q+A + +  +++ F D  Y+ L R
Sbjct: 114  PVIDRDWLVEY-REGLILLSGGRQGDVGKMLLRGNQQLAHECVDFYQQYFADSYYLELIR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   V LA   ELP+VATN+  FL   D++AH++ +A+     +    R
Sbjct: 173  TGRPDE--ESYLHFAVALAEERELPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   Y+++  EM  +F+D+PEALEN+VEIA+RC+  +++    LP+F   E     
Sbjct: 231  PKNYSAQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPTGEM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -STEDFLVAKSKEGLEERLEFLFPDPEVRAKRRPEYDERLDVELKVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDRVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  EPGMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     +
Sbjct: 525  FAPLYCDSEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKAGEDPI 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEVSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA + GI   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFKEGAERMGIDGELSMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGQYHFH 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+  I Y + AIKGVG      I++A  +   F  L D C+R D+KKLNRR+LE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIDARNEGGHFKELFDLCARTDTKKLNRRMLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----KITLEK 942
            +GA D  G  R  L+ SL++  K A    K       ++F    G  ++     + +   
Sbjct: 885  SGAFDRLGPHRAALMNSLNDALKAADQHAKAEAIGQVDMF----GVLAEAPEQVEKSYSS 940

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
             +   + V  + E+  LG Y +GHP+  Y K I R  G    ++   T RG       +V
Sbjct: 941  VAPWPAQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLV 1000

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V+ +   T++G+RIG  T  + +   E   F
Sbjct: 1001 VAARVMTTKRGNRIGVCTLDDRSGRLEVMLF 1031


>gi|315111545|ref|YP_156071.2| DNA polymerase III subunit alpha [Idiomarina loihiensis L2TR]
          Length = 1158

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1048 (40%), Positives = 624/1048 (59%), Gaps = 43/1048 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P+FVHL+VHS +S+++G   +  I + +A    PA+AITD  N    + +  KA   G+
Sbjct: 3    APNFVHLRVHSDFSMIDGLAKVGPICEAVAEAGMPALAITDQMNFCGLVRYYGKAHQLGL 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +P+IGC   +          Q   P   +  +  L    EGYQ++ +L+S+ YL    K 
Sbjct: 63   KPLIGCDFWV----------QADYPESEIFRLTALAMDNEGYQQITQLISKAYLRGNIKG 112

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL+E   EG+I+L+G   G + +A         +  L  +++ F DR Y+ L 
Sbjct: 113  KPVIDKDWLKE-HNEGIILLSGSRQGDVGQALIKGHDSQLDAALDFYQQYFPDRYYLELV 171

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R  +     + V LA    LP+VATN  +FL EED++AH++ +A+     +  K RP
Sbjct: 172  RTGRPQEENYLHKAVALAGETGLPVVATNEVVFLKEEDFDAHEIRVAIHDGYQLEDKRRP 231

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  +P  YL++  EM  +FSD+PEA+ENTVEIA+RC+  +++    LP+F      D+  
Sbjct: 232  KKYSPQQYLRSSEEMSELFSDIPEAIENTVEIAKRCNVTVRLGEYFLPKF---PTGDLTT 288

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            EE   L   +  GLE RL      A  +     +Y +RL  EL VI  M F GYFLIV +
Sbjct: 289  EEF--LIKVSEEGLEERLEFLFPDAEEREQKRPEYDERLKRELGVINDMGFPGYFLIVME 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRRDEVI +V + YG E V+QIITFG++ AKAA+RDVGR L  PY  VDR+ KLIP D
Sbjct: 407  CMDRRDEVIDHVADLYGREAVSQIITFGTMAAKAAIRDVGRVLAHPYGFVDRISKLIPGD 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   ++ +A   + +   A   D  V  ++++++ LEG+ R+A  HA G+VI    ++  
Sbjct: 467  PGMTLA-KAFEIEPQLGAAYDQDEEVKAIIDMARILEGVTRNAGKHAGGVVISPTKITDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
             P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++Q ++D + +R  K     +D
Sbjct: 526  SPLYCDDEGNNPVTQFDKDDVESAGLVKFDFLGLRTLTIIQWAVDMVNRRHAKSGKDPID 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ I   D   + LL    T  +FQLES GM++ ++ + PD  EDIIALV+L+RPGP+ +
Sbjct: 586  ITSIDLTDPACFKLLKKAETTAVFQLESRGMKELIKKLLPDSFEDIIALVALFRPGPLQS 645

Query: 658  IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N  +RK+G+E+I        H  + P+L+ T GVI+YQEQVMQIAQ+L+GY+L  A
Sbjct: 646  GMVDNFIDRKHGREEISYPDAEYQHESLQPILEPTYGVILYQEQVMQIAQVLAGYTLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+E F  GA++N I   +A  IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DLLRRAMGKKKPEEMAKQREIFAKGAAQNNIDPELATKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT WMKTH+P EF+AA M+ +MDN +KI     +  +  + ++PP VN     F V
Sbjct: 766  LVSYQTLWMKTHFPAEFMAAVMSADMDNTDKIVTLADECERMGLDLLPPDVNKGEYKFTV 825

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             +  R+ Y + AIKGVG      I++A  +  PF  L DFC RVD K++N+R+L+ L+ A
Sbjct: 826  DEQQRVVYGIGAIKGVGEAPIESIIKARQEGGPFRDLFDFCCRVDLKRMNKRILQRLIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDKITLEKFS 944
            GA+D  G  R  L+ +L+   + A+           ++F       +    + +++ K+S
Sbjct: 886  GAMDNLGPHRASLMATLEKAIRQAEQHLNAEKIGQSDMFGVLTTEPEAVEQEFVSVRKWS 945

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                +V  E E+  LG Y +GHP++ ++  L+            T +  +I +A +V+  
Sbjct: 946  ---EAVWLEGERDTLGLYLTGHPINRFRAELKHYINSTLSNVTPTRKDESIAIAGLVIDV 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +    ++G R   VT  +     +   F
Sbjct: 1003 RVLTNKRGQRFAIVTLDDKTARMDVRLF 1030


>gi|52841197|ref|YP_094996.1| DNA polymerase III, alpha subunit [Legionella pneumophila subsp.
            pneumophila str. Philadelphia 1]
 gi|52628308|gb|AAU27049.1| DNA polymerase III, alpha subunit [Legionella pneumophila subsp.
            pneumophila str. Philadelphia 1]
          Length = 1148

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1047 (41%), Positives = 644/1047 (61%), Gaps = 53/1047 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VH+ +SL++G + +  ++  + A    A+A+TD  NLF+A++  + A  AGI+PI
Sbjct: 5    FVHLRVHTEFSLVDGLVQIKPLMKALPARGMSAVAVTDFCNLFAAVKVFKSATEAGIKPI 64

Query: 71   IGCQL---DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IG  L   D++  DN             + S+VLL     GY+ L  LVS+ Y   Q   
Sbjct: 65   IGSDLPCHDLETPDN-------------IFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+ L W+QE  ++GLI L+GG  G I +A   N   +A KR L +  LF +R Y+ +Q
Sbjct: 112  QPRVQLQWIQEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQ 170

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            R  R  + +   +++ LA   +LPLVATN+  F+ E+D++AH+  + +     ++   R 
Sbjct: 171  RTGRADELHYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRV 230

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + +   YL++  EM  +FSDLP AL+NTVEI++RC+  L++    LP F   +   +  
Sbjct: 231  QQYSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDGTTV-- 288

Query: 306  EEENELRNKAVAGLEVRLAQ-------GAI--AKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E  L + +  GLE RL Q       G +  A+G    +Y +RL  EL+VI  M F+GY
Sbjct: 289  --EAYLSHLSEIGLEERLKQLFRDKSEGELLAARG----EYDKRLKIELDVINNMGFAGY 342

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMP
Sbjct: 343  FLIVADFIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMP 402

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC + RD VI YV  KYG + V+QIITFG++ AKA +RDVGR L  PY  VD+L 
Sbjct: 403  DFDIDFCMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLA 462

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP +    +S +A+  +   R     +  V  L +++ KLEG+ R+A  HA G+VI  
Sbjct: 463  KLIPFELGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAP 521

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592
              L+    +Y +  S   V+QF+   +E  GL+KFDFLGL+TLT++  +L  + ++    
Sbjct: 522  SQLTDFTAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENA 581

Query: 593  GVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            G+  +D+S IP  D  T+ LL    T  +FQLES GM++ +  +QPDC EDIIALV+L+R
Sbjct: 582  GLSPIDISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFR 641

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+ + +V  + +RK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L  
Sbjct: 642  PGPLQSGMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGA 701

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+E F  GA   G+ + +A +IF+L+ KFA YGFNKSH+AAY
Sbjct: 702  ADLLRRAMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAY 761

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+++YQTAW+K HYP  F+AA M+ +MDN +K+  F  +     +Q++PPS+N     F 
Sbjct: 762  ALVAYQTAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFT 821

Query: 830  VGDNR-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D + I Y L AIKGVG +    I+ E + + PF  L  FC R+D +K+NRRV+E+L+ 
Sbjct: 822  VSDEKTIIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIK 881

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            +GA D +   R  L  SL+   K A+   +N+++   ++F+  +    ++  +E  S   
Sbjct: 882  SGAFDIWKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDKADEQNYVESKSWSE 941

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVSKQ 1005
            +  R E E+ VLGFY +GHP D Y+   R++G  I    +   ++    I + A VV+ +
Sbjct: 942  AQ-RLEGEREVLGFYLTGHPADQYR---RELGDFIVPVSQLNPSLHKKAI-ICAQVVAIR 996

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T++G ++  +   +     +A  F
Sbjct: 997  KIITKRGKKLVIIGMDDATARIDAVVF 1023


>gi|320354498|ref|YP_004195837.1| DNA polymerase III subunit alpha [Desulfobulbus propionicus DSM 2032]
 gi|320123000|gb|ADW18546.1| DNA polymerase III, alpha subunit [Desulfobulbus propionicus DSM
            2032]
          Length = 1173

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1046 (41%), Positives = 645/1046 (61%), Gaps = 44/1046 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL VHS YS+L+GA+ +++++D        A+A+TD   ++ ALEF +KA  AGI+P+
Sbjct: 5    FIHLHVHSQYSMLDGAIRVSDLIDTAKEFGMEAVALTDHGAMYGALEFYEKAKKAGIKPL 64

Query: 71   IGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            +GC+  +  ++ +++ ++     F     +V L     GY  L++L S    L Q K   
Sbjct: 65   VGCEFYL-AENGMEIHDRSAGHNF----HLVALAMNEAGYGNLMKLAS----LAQTKGFY 115

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               RI    L     EGLI+LT    G I      N    A  R L  +K+FGDRLY+ +
Sbjct: 116  YRPRIDRQTLYA-HQEGLIVLTACLKGEIPWRLTHNDENRARARALELQKVFGDRLYLEI 174

Query: 187  QRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q +   ++   +Q ++ LA    + LVATN+  +L++E+  AH+VL+ +     ++  +R
Sbjct: 175  QENGLPEQTIANQGLMALAKDLNIKLVATNDCHYLTKEESYAHEVLLCIQTGKTINDPNR 234

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R  T + Y K+  EM + F+  PEA+ NT+E+A RC+  L       P F  KE + + 
Sbjct: 235  FRFNTNELYFKSGDEMAAQFAYCPEAISNTLEVAERCNLELSFKEHFFPIFPIKENETL- 293

Query: 305  KEEENELRNKAVAGLEVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
               E         G + RL      G ++     + YR RL++E++VI  M F+GYFLIV
Sbjct: 294  ---ETVFSQACWDGFQQRLDHMREMGPVS-AETEKTYRDRLEYEIDVIQEMGFAGYFLIV 349

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFI WAKK  IPVGPGRGSGAGS+ AY + ITDIDP+ + LLFERFLN +R+SMPDFD+
Sbjct: 350  ADFINWAKKQKIPVGPGRGSGAGSLAAYCMAITDIDPIPYGLLFERFLNVERVSMPDFDV 409

Query: 421  DFCQDRRDEVIRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            DFC++RRDEVI YV+ +YG  + VAQI+ +GS++A+A LRDVGR L +P   VDR+ KL+
Sbjct: 410  DFCKERRDEVIDYVRQRYGGDDYVAQIVAYGSMKARAVLRDVGRVLDIPLPVVDRIAKLV 469

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +    +  +AI  + R REA + D  V  LL I+Q LEGL RH STHAAG+VI  +P+
Sbjct: 470  PEELKITLK-KAIEKEPRLREA-MKDDEVRELLTIAQTLEGLARHKSTHAAGVVISPKPM 527

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDL 598
             + +P+      ++ +TQ++MK+ EK GLIKFDFLGLKTLT++ ++L  +A   G +VDL
Sbjct: 528  VEYLPVCIGPNKEI-LTQYDMKYTEKTGLIKFDFLGLKTLTVIDRALKLIAYDVGKEVDL 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD +TY+LL    +LG+FQLES GMR+ L  MQP+   D+IALV+LYRPGP+D+ 
Sbjct: 587  RKIPMDDPKTYNLLCRGDSLGVFQLESDGMRELLIKMQPEQFTDLIALVALYRPGPLDSG 646

Query: 659  VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V  +   K+G+       P I  +L+ET GVI+YQEQVM+I+ +L+GYSL +AD+LRRA
Sbjct: 647  MVDTFVETKHGRRPADYPLPQIKSVLQETYGVIVYQEQVMKISNILAGYSLGDADILRRA 706

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKKI E M+K++ +F++GA  N I +  A  IF+L+AKFA YGFNKSH+AAYA+++YQT
Sbjct: 707  MGKKIPEVMEKERGKFMAGAKVNNIPEDKATYIFDLMAKFAGYGFNKSHSAAYALVAYQT 766

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K HYP +FLAA ++ + DN +K+ K+  + RQ  I+++PP +N    DF V ++R+ 
Sbjct: 767  AYLKAHYPAQFLAALLSCDYDNTDKVVKYINECRQNKIEVLPPDINESFNDFTVINDRVR 826

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            + LAA+K VG      I+ E  A  P+ SL DFCSRVDS K+NR+V+ESL+ AGA D   
Sbjct: 827  FGLAAVKNVGGAALDSILAEREAGGPYRSLSDFCSRVDSSKVNRKVIESLIKAGAFDSMS 886

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDKITLEKFSVENSSV- 950
              R Q +  LD     A+  +++R +   N+FA      K   + ++ L     E   + 
Sbjct: 887  GRRAQYMAMLDQCLDRAKAAQRDRMSGQMNLFAIGQPASKQAEATEVELPADVEEWPELE 946

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRK---MGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            R   E+  +GF+ +GHPL+     LR+     I G E+      G  +R+  ++ S ++ 
Sbjct: 947  RLAAEKETVGFFLTGHPLEGVMEDLRRAVDTDIAGVEK---LREGQAVRIGGLIASYKEH 1003

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K++KG R+ + T  + +   E   FP
Sbjct: 1004 KSKKGDRMAFTTLEDMSASIEVIVFP 1029


>gi|32491128|ref|NP_871382.1| hypothetical protein WGLp379 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166335|dbj|BAC24525.1| dnaE [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 1159

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/981 (41%), Positives = 613/981 (62%), Gaps = 41/981 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL++HS YS+++G   +  I+++      PA+AITD  NL+  ++F   A   GI+PI
Sbjct: 6   FIHLRIHSDYSIIDGLPKIETIINRAKKLNMPALAITDFTNLYGLIKFYIFAKKNGIKPI 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG          LK    GK     +  I +L S   GY+ LI L+S+ Y   Q      
Sbjct: 66  IGSDF------YLKKIICGKEE---ISEITILASNNMGYKNLILLISKAYQFGQTNIGPT 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
           I L WL +  + GLI+L+GG  G I +    N+ +  +  +  +KK F +R Y+ + R  
Sbjct: 117 INLYWLSKYNS-GLIILSGGIYGEIGKYLIKNNLENIKYCINFYKKYFHNRYYLEITRTG 175

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
           +  +    +  + L+  + +PLVATNN  F+   D+  H++ +++  +T +    +   T
Sbjct: 176 KSEEEIYINYALNLSINYNIPLVATNNVRFIFRNDFNVHNIKVSIYQNTTLKNLKKNNYT 235

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            + Y+K   EM  +FSD+PE+LEN++EIA+RC+  ++++   LP F   E        + 
Sbjct: 236 DNQYMKCEKEMCDLFSDIPESLENSIEIAKRCNVNIELNKYHLPHFSSGELS-----PKK 290

Query: 310 ELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            + NK+  GLE +L      +I K  + + Y  RL  EL VI +MKF  YFLI+ +FI W
Sbjct: 291 YIINKSYLGLEKKLDFLFPNSIEKNKNKKKYETRLKNELKVINKMKFPSYFLIIMEFISW 350

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           AKKNNIPVGPGRGSGAGS+ AY+L ITDIDPL F LLFERFLNP+R+SMPDFDIDFC ++
Sbjct: 351 AKKNNIPVGPGRGSGAGSLVAYSLNITDIDPLSFGLLFERFLNPERISMPDFDIDFCMEK 410

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           RD VI +V N YG + VAQIITFG + A++ ++DVGR L  PY  VD++ KLIP DP   
Sbjct: 411 RDLVINHVANIYGKKSVAQIITFGKMTARSVIKDVGRVLGFPYRFVDKISKLIPLDPG-- 468

Query: 487 VSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
           V+L+ ++  + +  +   +D  V +++++S+ LEGL ++ S HA GIVI  + ++   P+
Sbjct: 469 VTLEKSLNTEHQLIKLYSSDEEVKKIIDMSKNLEGLIKNVSKHAGGIVISPKEITNFTPI 528

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSL 600
           Y D++++  +TQF+   IEK GL+KFDFLGL+TLT++  ++  + ++  K     +D+S 
Sbjct: 529 YYDIKNNTQITQFDKDDIEKIGLVKFDFLGLRTLTIIDWTVKIINKKREKNNLDLIDISK 588

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
           IP +D +++ LL    T+ +FQLES G+R  ++ +QPDC EDII+LV+L+RPGP+ + +V
Sbjct: 589 IPLNDIKSFELLKKSKTISVFQLESKGIRDLIKRLQPDCFEDIISLVALFRPGPLKSGMV 648

Query: 661 YN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            N  NRK+GKEKI        H L++P+LK T G+I+YQEQVM IAQ+L+GYSL EAD+L
Sbjct: 649 ENFINRKHGKEKIFYPDKNWQHELLEPILKSTYGIILYQEQVMSIAQVLAGYSLGEADIL 708

Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
           RRAMGKK  +EM +Q+ RF +GA KNGI K  ++ IF+LL KF+ YGFNKSH+AAYA++S
Sbjct: 709 RRAMGKKKVKEMSEQRNRFKNGALKNGIDKIFSMKIFDLLEKFSGYGFNKSHSAAYALLS 768

Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
           YQT W+KTHY  EF++++M+ +MDN ++I     + +   I+I+ P +NT    FKV D 
Sbjct: 769 YQTLWLKTHYATEFMSSAMSADMDNSDRIISLINECKNIGIKILLPDINTCNYHFKVVDK 828

Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
           +I Y L AIKG+G ++ + I  +   +  F  L D C R D KKL R+ +E L+F+GALD
Sbjct: 829 KIIYGLGAIKGIGLSSIKEIKNQIKKNGNFTDLFDLCLRSDPKKLTRKTIEKLIFSGALD 888

Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF--SVENSSV 950
                R   +++L    K+AQ   KN+     ++F +       K   + F  S++N S+
Sbjct: 889 KLNKDRSFNVKNLPYAMKFAQQKIKNKKLGQIDMFNYR---LKSKYIFKHFESSMQNFSI 945

Query: 951 RFENEQRVLGFYFSGHPLDVY 971
             E E+ +LG Y S HP+  Y
Sbjct: 946 -LEEERNMLGIYLSNHPMKYY 965


>gi|145598935|ref|YP_001163011.1| DNA polymerase III subunit alpha [Yersinia pestis Pestoides F]
 gi|145210631|gb|ABP40038.1| DNA polymerase III, alpha subunit [Yersinia pestis Pestoides F]
          Length = 1171

 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1056 (41%), Positives = 624/1056 (59%), Gaps = 49/1056 (4%)

Query: 4    YLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            YL+ + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A
Sbjct: 9    YLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSA 68

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              AGI+PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y  
Sbjct: 69   HGAGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQR 118

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDR 181
              G     I   WL +   EGLI+L+GG  G + + F    +QV   + L F ++ F D 
Sbjct: 119  GYGAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGK-FLLRGNQVQVDQCLAFYQEHFPDC 176

Query: 182  LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ L R  R  +       V LA    LP+VATN+  F+ E D++AH++ +A+     +
Sbjct: 177  YYLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTL 236

Query: 241  SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E
Sbjct: 237  VDPKRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGE 296

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGY 356
                    E+ L  KA  GLE RL     A     Q   +Y +RLD EL VI +M F GY
Sbjct: 297  M-----STEDFLVEKAKQGLEERLEFLFPAPEVRLQKRPEYDERLDIELKVINQMGFPGY 351

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMP
Sbjct: 352  FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMP 411

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ 
Sbjct: 412  DFDVDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 471

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI  
Sbjct: 472  KLIPLDPGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAP 530

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
              ++   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K 
Sbjct: 531  TKITDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKT 590

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+R
Sbjct: 591  GLEPIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFR 650

Query: 652  PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PGP+ + +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSG
Sbjct: 651  PGPLQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSG 710

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YSL  AD+LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKS
Sbjct: 711  YSLGGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKS 770

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+ 
Sbjct: 771  HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSG 830

Query: 825  CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVL 882
               F V D+  I Y + AIKGVG      I+EA  +   F  L D C+RVD+KKLN+R+L
Sbjct: 831  LYHFHVNDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRIL 890

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E L+ +GA D  G  R  L+ SL +  K A    K       ++F    G  +D     +
Sbjct: 891  EKLIMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMF----GVLADAPEQVE 946

Query: 943  FSVEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIR 996
             S  N       V  + E+  LG Y +GHP+  Y K I R  G    ++   T RG    
Sbjct: 947  QSYANVPPWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTT 1006

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 1007 AVGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|291615022|ref|YP_003525179.1| DNA polymerase III, subunit alpha [Sideroxydans lithotrophicus ES-1]
 gi|291585134|gb|ADE12792.1| DNA polymerase III, alpha subunit [Sideroxydans lithotrophicus ES-1]
          Length = 1189

 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1084 (40%), Positives = 639/1084 (58%), Gaps = 84/1084 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PSFVHL++HS YS+ +G + +   +    AD  PA+A+TD +N+F  ++F ++A  AGI+
Sbjct: 3    PSFVHLRLHSEYSIADGIVRIGEAVSAAKADAMPALALTDLSNVFGLVKFYKEARGAGIK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+GC + +    N  + +Q   PF     ++LL  +  GY RL  L++R YL +Q +  
Sbjct: 63   PIVGCDVYVS---NDAVRDQ---PF----RLLLLCQSHAGYLRLCGLLTRAYLENQYRGR 112

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL++ GT+GLI L+G   G +       ++  AE   L +  LF  R Y+ +QR
Sbjct: 113  PEIRTEWLRD-GTDGLIALSGAHLGEVGMTLLNGNASSAEVVALGYADLFPQRFYLEVQR 171

Query: 189  HRGYDRYRESQ----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
               +   RE Q     V+LA    LP+VAT+   FL+ +D++AH+  + +A   V++ K 
Sbjct: 172  ---FGAAREEQHLRDTVKLASKLALPVVATHPVQFLTIDDFKAHEARVCIAEGYVLNDKR 228

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R  T   Y K ++EM ++F+DLPEAL+N+VEIA+RC+  L++  P LP F     + +
Sbjct: 229  RQRQFTAQQYFKTQAEMAALFADLPEALQNSVEIAKRCNISLKLGKPHLPDFPTPNGESL 288

Query: 304  QKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                ++ LR+++  GLE R+ Q       +     +Y+ RLDFE+N I  MKF GYFLIV
Sbjct: 289  ----DDFLRSESQRGLEQRMLQLYPDETVRAAKMAEYQARLDFEVNTIINMKFPGYFLIV 344

Query: 361  ADFIQWAKK-------NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
            ADFI+WAK        N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+
Sbjct: 345  ADFIRWAKSFRDARFPNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYELLFERFLNPERV 404

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPDFD+DFCQD R+ VI+YV++ YG   V+QI TFG++ +K  +RDVGR L  PY   D
Sbjct: 405  SMPDFDVDFCQDGRELVIQYVRHHYGEACVSQIATFGTMASKGVIRDVGRVLDFPYGLCD 464

Query: 474  RLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            RL KL+P +   PVSL+   + +  F     ++  V+ L+E+ ++LE L R+   HA G+
Sbjct: 465  RLSKLVPVEGVKPVSLRKAREMEPEFNAVIASEEGVEELMELGERLEDLTRNVGMHAGGV 524

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            +I    L+   P+Y    S+  V+Q++   +E  GL+KFDFLGL+TLT++  ++ ++   
Sbjct: 525  LIAPGKLTDFCPLYCAEGSESTVSQYDKDDVEAVGLVKFDFLGLRTLTIIDWAVRYIQDL 584

Query: 593  GVKVD------------------------LSLIPFDDHETY-HLLTTKGTLGIFQLESSG 627
            G  +                         +  IP DD  TY  +  T  T  +FQ ES G
Sbjct: 585  GTGISDLGSSNAGAGGDAKSQIQNPKSFSIENIPLDDKATYDRIFRTANTTAVFQFESRG 644

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            M+  L   QPDCI+D+IAL +LYRPGP+D I  Y NRK+ +E+++  HPL++ ++  T G
Sbjct: 645  MKDTLVKAQPDCIDDLIALNALYRPGPMDFIPDYINRKHKREQVILPHPLLEKVVGNTYG 704

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +++YQEQVMQ AQ+++GY+L  AD+LRRAMGKK  EEM +Q+  F++GA+KNGI +  A 
Sbjct: 705  IMVYQEQVMQSAQVVAGYTLGGADMLRRAMGKKKAEEMAEQRSIFVAGAAKNGIEEKKAN 764

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             IF+ + KFA YGFNKSHAAAY++++YQTA++K HYP  F+A++MT EM N +K+  F Q
Sbjct: 765  EIFDTMEKFAGYGFNKSHAAAYSLVAYQTAYLKCHYPAAFMASTMTSEMVNTDKVSFFYQ 824

Query: 808  DARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            DA Q  ++I+ P +N+ C  F+ V +  I Y L A+KG G     +I+ A A  PF  L 
Sbjct: 825  DAVQQGLKILAPDINSSCFRFQPVDEKTIAYGLGAVKGTGEAAVENIVAARAAGPFRDLF 884

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DFC RVD + +NRR +E+L+ AGA D     R QLL SLD     A+  +K R     ++
Sbjct: 885  DFCHRVDKRIVNRRAIEALIRAGAFDSISDHRYQLLASLDAALGSAE--QKARAANQNSL 942

Query: 927  FAHEKGTFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILR---KMGIK 981
            F  ++   +  + ++   V    +R     E+  LGFY SGHP   +   L    K  + 
Sbjct: 943  FGDDE---AHAMPVQMADVPRWKMREQLAQEKTALGFYLSGHPYQEFAAELSNFVKHRLA 999

Query: 982  GYEESVAT----------IRGNN---IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                 + T           R NN   I LA MV   +  +TR+G ++  VT  + +   E
Sbjct: 1000 DITPDIVTPAGGNSGYGGGRRNNAKSIVLAGMVSGVRVLQTRRG-KMAVVTLDDGSAALE 1058

Query: 1029 ANFF 1032
               F
Sbjct: 1059 VVVF 1062


>gi|114321000|ref|YP_742683.1| DNA polymerase III, alpha subunit [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227394|gb|ABI57193.1| DNA polymerase III, alpha subunit [Alkalilimnicola ehrlichii MLHE-1]
          Length = 1182

 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1068 (41%), Positives = 636/1068 (59%), Gaps = 62/1068 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS +SL +G L +  ++D +A    PA+AITD  NLF  ++F + A AAG++P
Sbjct: 6    GFVHLNVHSEFSLSDGILRIPELVDAVAGQGMPAVAITDQGNLFGMVKFYKAALAAGVKP 65

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK--- 126
            I+G ++ ++ ++  +  +          ++ LL    +GY  L  L+S  Y   QG+   
Sbjct: 66   IVGAEIRVEDEEAERDHS----------ALTLLCRDLDGYAALSRLLSLSY--QQGRTVD 113

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             +  +  +WL E   EGLI+L+GG  G + +A    +++ AE     +   F D  ++ L
Sbjct: 114  DTPVVQRAWL-EADHEGLIVLSGGKDGDVGKALLAGNTRRAESLARWYAGHFPDAYFLEL 172

Query: 187  QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR  R  D       V LA    LP+VATN   FL+ +DY+AH+V + +     +    R
Sbjct: 173  QRTGRPGDEDHLHAAVALATELALPVVATNAVRFLAADDYDAHEVRVCIHDGYTLDDPKR 232

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  T   YL++ +EM ++FSDLPEALENTVEIARRCS  L +   +LP F   E   I 
Sbjct: 233  PRRYTNQQYLRSPAEMGALFSDLPEALENTVEIARRCSLDLTLGENVLPDFPIPEGLTI- 291

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIV 360
               E  L  +A+ GLE RL +  +A+G   +     YRQRLD+EL +I +M F GYFLIV
Sbjct: 292  ---EEFLHQEALRGLEQRLEERGLAEGETEEGVRETYRQRLDWELGIINQMGFPGYFLIV 348

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFI+WAK+++IPVGPGRGSGAGS+ AYAL ITD+DPLR+ LLFERFLNP+R+SMPDFD+
Sbjct: 349  ADFIRWAKEHDIPVGPGRGSGAGSLVAYALAITDLDPLRYDLLFERFLNPERVSMPDFDV 408

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RDEVI YV  +YG E+V+QI T G++ A+A +RDVGR L   Y  VDR+ KL+P
Sbjct: 409  DFCMEQRDEVIEYVARRYGREKVSQIATHGTMAARAVVRDVGRVLGHGYGYVDRIAKLVP 468

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +P   ++ +A   +   +     D     LL ++ KLEGL R+   HA G+VI    L+
Sbjct: 469  FEPGMQLT-KAFELEPELKALYEKDEEAGPLLSMALKLEGLARNVGKHAGGVVIAPTALT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ---KSLDFL-AQRG-VK 595
               P+Y +   +   TQ++   +E+ GL+KFDFLGL+TLT++    K+++ L  QRG   
Sbjct: 528  DFSPLYCEPGGEGLATQYDKDDVEEVGLVKFDFLGLRTLTIIDWTVKAVNALREQRGETP 587

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D++ IP DD  T+ LL    T  +FQLES GM++ ++ +QPD  EDIIALV+L+RPGP+
Sbjct: 588  LDIARIPLDDRATFDLLKRCQTTAVFQLESRGMKELIKRLQPDSFEDIIALVALFRPGPL 647

Query: 656  DNIVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V  + +RK+G+ ++    P      ++P+LK T GVI+YQEQVMQIAQ L+GYSL 
Sbjct: 648  QSGMVDDFIDRKHGRAQVAYPTPELHHDDLEPILKPTYGVILYQEQVMQIAQALAGYSLG 707

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK   EM KQ+E F+ GA ++G+S+  A  IF+L+ KFA YGFNKSH+AA
Sbjct: 708  AADLLRRAMGKKKAAEMAKQREIFLKGAQEHGLSEAHAGAIFDLMEKFAGYGFNKSHSAA 767

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQTAW+K HYP  F+A+ ++ +MDN +K+  F ++ R+  + + PP VN     F
Sbjct: 768  YALLSYQTAWLKHHYPAPFMASVLSSDMDNTDKVVIFIEECREMGLTVRPPDVNRSGYRF 827

Query: 829  KVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            +  D + I Y L A+KGVG +    I+E   A  PF  L+D C+RVD +K+NRRVLE+L 
Sbjct: 828  RAEDEQTIIYGLGAVKGVGQSALDAIIEERDAHGPFKDLQDLCNRVDLRKVNRRVLEALC 887

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSV 945
             +G+LD    +R   +  L      A+   +N     E++F     G    +     FS 
Sbjct: 888  RSGSLDSLIPNRATGMAWLPEALAAAEQKTRNAAAGQEDLFGLPGDGAAVAEAEEPHFST 947

Query: 946  ENSSV-----RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI---------- 990
               +      R   E+  LG + +GHP+D Y+  L  +  +   + +A            
Sbjct: 948  PEQAEWDEHDRLAAEKETLGLFLTGHPIDPYEAELSHLAERRIAQVLAAAGEPGEKPENG 1007

Query: 991  -----RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G ++R+  +VVS + + T  G R+  +   +     EA  FP
Sbjct: 1008 RGRRRNGPSVRVVGLVVSLRTRNTASGGRMASLVLDDRTARMEAMLFP 1055


>gi|238897448|ref|YP_002923125.1| DNA polymerase III, alpha subunit [Candidatus Hamiltonella defensa
            5AT (Acyrthosiphon pisum)]
 gi|229465203|gb|ACQ66977.1| DNA polymerase III, alpha subunit [Candidatus Hamiltonella defensa
            5AT (Acyrthosiphon pisum)]
          Length = 1160

 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1054 (41%), Positives = 620/1054 (58%), Gaps = 56/1054 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL VHS YS+++G   +  ++ K AA   PA+A+TD +N    ++F   A   GI+
Sbjct: 4    PRFIHLSVHSDYSMIDGLTKIKPLVQKAAALGMPALALTDFSNFCGLVKFYGAAHKVGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  +Q+     N  +        + LL    EGY  +  L+S  Y    G   
Sbjct: 64   PIIGA--DFYVQNPALENNFAR--------LTLLARNQEGYHNITLLISAAYQRGYGSLG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   EGLI+L+G   G + +     +    ++ L  ++  F D  Y+ L R
Sbjct: 114  PVIDRHWLIK-HKEGLILLSGAKMGDLGQFILRENQSQIDQCLHFYQTHFPDNYYIELTR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       + +A  H +P+VATN+  F+   D++AH++ +A+     ++   RP+
Sbjct: 173  TGRADEESYLHSAINIAEKHGIPVVATNHVRFMDPSDFDAHEIRVAINAGFTLADPKRPQ 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +FSD+PEAL N+VEIA+RC+  L++     P++   +       
Sbjct: 233  NYSPQQFMRSEQDMCELFSDIPEALTNSVEIAKRCNLNLRLGEYFFPKYPTGKM-----S 287

Query: 307  EENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             E+ L  ++  GL  RL    +   I K    + Y QRL  EL VI  M F GYFLIV +
Sbjct: 288  TEDFLIARSQEGLGKRLEFLFSDPEIRK-QKREAYDQRLALELQVINEMGFPGYFLIVME 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N+IPVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+S+PDFD+DF
Sbjct: 347  FIQWAKDNHIPVGPGRGSGAGSLVAYALQITDIDPLEFDLLFERFLNPERISLPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C ++RD VI +V + YG E V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLIP D
Sbjct: 407  CMEKRDAVIEHVADMYGRESVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRIAKLIPLD 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +    +A  AD  V  LL++++KLEG+ R+A  HA G+VI    ++  
Sbjct: 467  LGMTLE-KAFVAEPELTKAYEADEEVRSLLDMARKLEGVTRNAGKHAGGVVIAPTKMTDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
             P+Y D +   PVTQF+   IE  GL+KFDFLGL+TLT++ K+++ + QR +      +D
Sbjct: 526  APLYCDSQGQNPVTQFDKNDIEYVGLVKFDFLGLRTLTVIHKAVEMINQRIITQGAQPID 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +SLIP +D +++ +L    T  IFQLES GM+  ++ ++PDC EDIIALV+L+RPGP+ +
Sbjct: 586  ISLIPLNDPKSFEVLQRSETTAIFQLESKGMKDLIKRLKPDCFEDIIALVALFRPGPLQS 645

Query: 658  IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N  +RK G+E I        HP + P+L+ T G+I+YQEQVMQIAQ+LSGYSL EA
Sbjct: 646  GMVDNFIDRKQGRETISYPDIEWQHPCLQPVLEPTYGIILYQEQVMQIAQVLSGYSLGEA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK   EM KQ+  F +GA + GI   +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DILRRAMGKKDPVEMAKQRSIFENGAKEKGIDGQLAIKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+KTHYP EF+AA MT +MDN +KI     +  +  + ++PP +N+    F V
Sbjct: 766  LLSYQTLWLKTHYPAEFMAAVMTADMDNTDKIVGLVDECARMGLTMLPPDINSGFYHFHV 825

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                +I Y + AIKGVG      I+EA      F  L DFC+R   KKLNRR+LE L+F+
Sbjct: 826  NAQGKIVYGMGAIKGVGEGAIESILEARRQGGEFKDLFDFCARTAKKKLNRRILEKLIFS 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GALD  G  R  L+ +L N  K A+   K       ++F          +T +   +E S
Sbjct: 886  GALDRLGPHRAALMHALQNAIKAAEQHAKAELTGQADMFG--------VLTQDPKKIEQS 937

Query: 949  SVR---------FENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLA 998
              +          + E+  LG Y +GHP+  Y K I   +G    ++   T RG N+ +A
Sbjct: 938  YAQVPPWQQQTVLDGERETLGLYLTGHPITQYLKEIRHYVGSSRLQDLSPTPRGKNVTVA 997

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              VVS +   T++G+RIG     + +   +   F
Sbjct: 998  GFVVSAKVMTTKRGARIGLCKLDDRSAHLDIMLF 1031


>gi|269960606|ref|ZP_06174978.1| DNA polymerase III subunit alpha [Vibrio harveyi 1DA3]
 gi|269834683|gb|EEZ88770.1| DNA polymerase III subunit alpha [Vibrio harveyi 1DA3]
          Length = 1159

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1048 (40%), Positives = 627/1048 (59%), Gaps = 45/1048 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL++HS +S+++G   +  ++ K+A    PA+A+TD  NL   +++   A  +G++
Sbjct: 4    PKFIHLRIHSDFSMVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGTAHGSGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  MQ +      G+     +  + LL +  EGY+ L  L+S+ YL    +  
Sbjct: 64   PIIGA--DFKMQSD----EFGEE----LTQLTLLAANNEGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  +WL E+ +EGLI+L+G  +G I +A    + +V +  +  + + F DR Y+ L R
Sbjct: 114  PVLDKAWLAEL-SEGLIVLSGAKNGEIGKALLKGNRKVVDSCVEFYNQYFPDRFYLELVR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       ++LA   ELP+VATN  +F+SE+ ++AH++ +A+     +    RP+
Sbjct: 173  TGRPDEETYLHFAIELAEEVELPVVATNEVVFISEDLFDAHEIRVAIHDGYTLEDPRRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P+ YL+   EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       E
Sbjct: 233  NYSPEQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM-----E 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E + L  K+  GLE RL         +     +Y  RL  EL+VI +M F GYFLIV +F
Sbjct: 288  ETDFLVMKSREGLEERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P DP
Sbjct: 408  MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +    E   AD  V  L+++ + LEG  R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFKAEPALPELYDADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  +     V +
Sbjct: 527  PIYADSEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKDPVRI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + 
Sbjct: 587  ESIPLDDAPSFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  + ++PP +N     F V 
Sbjct: 767  VSYQTLWLKMHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINAGLYRFNVD 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +N  I Y + AIKGVG      I+EA +    F  L DFC+R+D KK+N+RV+E L++AG
Sbjct: 827  ENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIYAG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----KITLEKFS 944
            ALD  G  R  L+ SL++  K A    +       ++F    G  +D     +    +  
Sbjct: 887  ALDRLGPHRAALMASLNDAVKAASQHHQAEAFGQTDMF----GVLTDAPEEVEHKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  AWPEKVWLEGERETLGLYLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|300923024|ref|ZP_07139091.1| DNA polymerase III subunit alpha [Escherichia coli MS 182-1]
 gi|300420651|gb|EFK03962.1| DNA polymerase III subunit alpha [Escherichia coli MS 182-1]
          Length = 1144

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1040 (41%), Positives = 625/1040 (60%), Gaps = 54/1040 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59   DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIK
Sbjct: 764  AEFMAAGMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953
             SL +  K A    K       ++F    G  ++    E   +E S          V  +
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935

Query: 954  NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++G
Sbjct: 936  GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 995

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +RIG  T  + +   E   F
Sbjct: 996  NRIGICTLDDRSGRLEVMLF 1015


>gi|327480169|gb|AEA83479.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri DSM 4166]
          Length = 1173

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1064 (40%), Positives = 632/1064 (59%), Gaps = 63/1064 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +AA   PA+A+TD +N+ S ++F + A  AGI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKAVAAGGMPAVAVTDMSNMCSLVKFYKTAQGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I  C  DI +         G      +  + LL    +GY+ L EL+SR +   Q    V
Sbjct: 64   I--CGADIWLA--------GCDEDGPLSRLTLLAMNPKGYRNLTELISRGWTEGQRNDLV 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W++E   EGLI L+G   G I  A       +A  RL  ++++F DR Y+ +QR 
Sbjct: 114  IIEREWVKE-AAEGLIALSGAKEGEIGHALLNGDEALAASRLAEWREVFADRFYLEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +R  D       V LA     PLVATN+  FL +ED+EAH+  + +     +    RPR 
Sbjct: 173  NRVNDEEHLHAAVALAERSGAPLVATNDVRFLKQEDFEAHETRVCIGEGRTLDDPRRPRT 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK   EM  +F+DLPEALENTVEIA+RC+  +Q+    LP F   E   I    
Sbjct: 233  YSDQQYLKTPEEMAELFADLPEALENTVEIAKRCNIEVQLGTYFLPNFPVPEGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKG---YHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            ++ LR  +  GLE RL +  + K    Y A  Q Y  RL+FEL  I +M F GYFLIV D
Sbjct: 289  DDYLRQVSFEGLEERL-EVLLPKDTPDYEAKKQVYIDRLEFELGTIIQMGFPGYFLIVMD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 348  FIKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDF 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV   YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP +
Sbjct: 408  CMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 467

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R    HA G+VI    L+  
Sbjct: 468  VGMTLE-KAYEMEEPLRDFLAVDEDAREIWEMALKLEGITRGTGKHAGGVVIAPTKLTDF 526

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VD 597
             P+  D      VTQF+   +E+AGL+KFDFLGL+TLT+++ +L+ +    A++G++ V+
Sbjct: 527  APIACDEEGGGLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWALETINREQAKKGLEPVN 586

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 587  IDFIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 646

Query: 658  IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 647  GMVDDFINRKHGRAEVSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGA 706

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G + NGI   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 707  DMLRRAMGKKKPEEMAKQRGGFIEGCANNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 766

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+K H+P  F+AA ++ +M N +K+    ++ R   ++I PP VN     F V
Sbjct: 767  LVSYQTAWLKAHHPSPFMAAVLSADMHNTDKVVILIEECRSMKLRIDPPDVNVSEFKFTV 826

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D+ RI Y L A+KGVG      I E  A+  PF  L DFC+R+D K++N+R LE+L+ +
Sbjct: 827  NDDGRIVYGLGAVKGVGEGPVEAIAECRAEGGPFKDLFDFCARIDLKRINKRTLEALIRS 886

Query: 889  GALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---- 929
            GALD  G                +R  LL +++   + A+   ++  + H ++F      
Sbjct: 887  GALDRLGPYFFEEAKAYQANIDRNRAVLLAAMEEAVQAAEQTARSAESGHMDLFGGLFAE 946

Query: 930  -EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
             E   +++     + S++    R + E+  LG Y +GHP+D Y+  +R+   +   + + 
Sbjct: 947  PEADVYANHRNARELSLKE---RLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIID-LR 1002

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              RG    +A ++V+ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARGEQT-IAGLIVNLRVMKNKKGDKMGFITLDDRSGRIEASLF 1045


>gi|85059906|ref|YP_455608.1| DNA polymerase III subunit alpha [Sodalis glossinidius str.
            'morsitans']
 gi|84780426|dbj|BAE75203.1| DNA polymerase III alpha subunit [Sodalis glossinidius str.
            'morsitans']
          Length = 1160

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1053 (41%), Positives = 624/1053 (59%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G + +  ++ K AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 4    PHFIHLRVHSDYSMIDGLVKIGPLVKKAAALHMPALAITDFTNLCGLVKFYGSAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q       +  + +L +   GYQ L  L+S  Y    G   
Sbjct: 64   PIIGADFFV----------QSGMLGDELAELTILAANNVGYQHLTLLISDAYKRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+G   G + +     +    E+ L  +++ F DR Y+ L R
Sbjct: 114  PVIDRDWLIE-HNEGLILLSGARKGDVGKFLMRGNMPQVEQCLAFYERYFPDRYYLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN+  F S +D++AH++ +A+ +   +    RPR
Sbjct: 173  TGRADEESYLHAAVELAARRGLPVVATNDVRFTSPDDFDAHEIRVAIHNGFTLDDAKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+DLPEAL N+VEIARRC+  +++    LP+F   E       
Sbjct: 233  NYSPQQYMRSEEEMCELFADLPEALANSVEIARRCNVTIRLGEYFLPQFPTGEM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L   A  GLE RLA     A  +      Y +RL  EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKCAREGLEERLAFLFPDADMRREKRPAYDERLAIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALNITDLDPLAFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDLVIDHVAETYGDDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + + +    AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFVAEPQLQAIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +    A++G++ +D+
Sbjct: 527  PLYCDGEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRARQGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIEWQHASLQPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F +GA   G+   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFKAGAESIGVDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECLRMGLKVLPPDINSGQYHFHVN 826

Query: 832  -DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +  I Y + AIKGVG      I+EA + D  F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  PEGEIVYGIGAIKGVGEGPIEAIIEARNQDGHFRELFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A D  G  R  L+ SL +  K A        ++H    A  +G     +  E  +VE S 
Sbjct: 887  AFDRLGPHRAALMNSLCDALKAA--------DQHAKAEAIGQGDMFGVLAEEPAAVEASY 938

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999
                     V  + E+  LG Y +GHP+  Y + I R  G    ++   T RG  +    
Sbjct: 939  STVAPWPEQVVLDGERETLGLYLTGHPITQYLREIERYAGGVRLKDIHPTDRGKMVTAVG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V+S +   T++G+RIG  T  + +   +   F
Sbjct: 999  LVLSARVMVTKRGNRIGVCTLDDRSGRLDVMLF 1031


>gi|260775271|ref|ZP_05884168.1| DNA polymerase III alpha subunit [Vibrio coralliilyticus ATCC
            BAA-450]
 gi|260608452|gb|EEX34617.1| DNA polymerase III alpha subunit [Vibrio coralliilyticus ATCC
            BAA-450]
          Length = 1159

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1050 (40%), Positives = 620/1050 (59%), Gaps = 49/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A   G++
Sbjct: 4    PKFIHLKVHSDFSMVDGLSKVPPLVKKVAEMGMPAMALTDFTNLCGLVKFYGTAHGCGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  MQ        G+     +  + +L +  EGY+ L  L+S+ YL    +  
Sbjct: 64   PIIGA--DFAMQSE----EFGEE----LTKLTVLAADNEGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+ + GLI+L+G  SG I +A    + +VA+     + + F DR ++ L R
Sbjct: 114  PVIDKQWLAEL-SAGLIVLSGAKSGEIGKALLKGNHKVAQNCADFYHQHFADRFFLELTR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       ++ A   +LP+VATN+ + L E  +EAH++ +A+     +    RP+
Sbjct: 173  TGRADEETYLHFALEFAEKEQLPVVATNDVVILDETTFEAHEIRVAIHDGYTLEDPRRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   YL++  EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       E
Sbjct: 233  NYSAQQYLRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM-----E 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E   L  K+  GLE RL         +     +Y +RL  EL VI  M F GYFLIV +F
Sbjct: 288  ETEFLVKKSEEGLEERLEFLFPDEEERAKRRPEYDERLKVELEVINNMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P DP
Sbjct: 408  MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +    E   AD  V  L+++ + LEG  R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFKAEPALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  +     V +
Sbjct: 527  PIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKDPVRI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + 
Sbjct: 587  ESIPLDDAASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +V N  +RK+G+E I          S+  ++DP    T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 647  MVDNFIDRKHGREAISYPDEKWQHESLKEILDP----TYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRATFEDGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N     
Sbjct: 763  AYALVSYQTLWLKMHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLYR 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +N  I Y + AIKGVG      I+EA +    F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDENGAIVYGIGAIKGVGEGPIEAILEARNKGGHFKDLFDFCARIDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEK 942
            ++AGALD  G  R  ++ SL++  K A    +       ++F            K T  K
Sbjct: 883  IYAGALDRLGPHRAAMMASLNDAVKAASQYHQAEAFGQSDLFGVLTEAPEEVEHKYT--K 940

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                   V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V+
Sbjct: 941  VPAWPEKVWLEGERDTLGLYLTGHPINAYIKELGKYTSCRLKDATPTRRDQSVTVAGLVI 1000

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG +T  + +   E   F
Sbjct: 1001 AARVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|330504229|ref|YP_004381098.1| DNA polymerase III subunit alpha [Pseudomonas mendocina NK-01]
 gi|328918515|gb|AEB59346.1| DNA polymerase III subunit alpha [Pseudomonas mendocina NK-01]
          Length = 1176

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1067 (40%), Positives = 634/1067 (59%), Gaps = 66/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL++H+ YSL++G + +  ++  +A    PA+A+TD +N+ S ++F + A  AG++P
Sbjct: 4    AFVHLRLHTEYSLVDGLVRVKPLIKAVAGAGMPAVAVTDMSNMCSLVKFYKTAMGAGVKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I  C  DI M      + +   P   +  + LL   A+GY+ L EL+SR +   Q    V
Sbjct: 64   I--CGADIWMA-----SAEEDGP---LTRLTLLAMNAKGYRNLTELISRGWAEGQSNDLV 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+++   EGLI L+G   G + +A       +AE RL  +  +F DR Y+ +QR 
Sbjct: 114  IIQRDWVKD-AAEGLIALSGAREGEVGQALLGGDEVLAEARLREWMSVFPDRFYLEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             R  D       V LA   E PLVATN+  F+ ++D+EAH+  + +     +    RPR 
Sbjct: 173  SRVGDEEYLHAAVALADRVEAPLVATNDVRFIKQDDFEAHETRVCIGEGRTLDDPRRPRN 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FSDLPEALENTVEIA+RC+  +Q+    LP F       I    
Sbjct: 233  YSDQQYLKSAEEMWELFSDLPEALENTVEIAKRCNIDVQLGKYFLPDFPTPNGMGI---- 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKG---YHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            ++ LR+ +  GLE RL +  + K    Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DDYLRHASFEGLEERL-EVLLPKDTPDYEAKKQVYIDRLNFELDIIIQMGFPGYFLIVMD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 348  FIQWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDF 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV RA    Y   DRL K+IP +
Sbjct: 408  CMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSYGLADRLSKMIPFE 467

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   RE    D     + ++S KLEG+ R    HA G+VI    L+  
Sbjct: 468  VGMTLE-KAYEMEEPLREFLKNDEEAQEIWDMSLKLEGVVRGTGKHAGGVVIAPTKLTDF 526

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGV 594
             P+  D      VTQF+   +E+AGL+KFDFLGL+TLT+++ +++ +        A    
Sbjct: 527  SPIACDEEGGGLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWAMETIHRIQKRDGASDEE 586

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V++  IP DD +TY +L    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP
Sbjct: 587  LVNIDFIPLDDKKTYDMLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALFRPGP 646

Query: 655  IDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ++ GY+L
Sbjct: 647  LQSGMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMGGYTL 706

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             +AD+LRRAMGKK  EEM KQ+  FI G + NGI   +A NIF+L+ KFA YGFNKSH+A
Sbjct: 707  GQADMLRRAMGKKKPEEMAKQRGGFIEGCANNGIDAELAGNIFDLVEKFAGYGFNKSHSA 766

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AY ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   ++I PP VN     
Sbjct: 767  AYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVILVEECRNMKLRIDPPDVNVSEFK 826

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D+ RI Y L A+KGVG      I+E  A+  PF  L DFC+RVD +++N+R LE+L
Sbjct: 827  FTVNDDGRIVYGLGAVKGVGEGPVEAIVECRAEGGPFKDLFDFCNRVDLRRINKRTLEAL 886

Query: 886  VFAGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929
            + +GALD  G                +R  LL S++   + A+   ++  + H ++F   
Sbjct: 887  IRSGALDRLGPYYQDELKAYQASVDKNRAVLLASMEEAVQSAEQTARSAESGHMDLFGGL 946

Query: 930  ----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                E   +++     +  ++    R + E+  LG Y SGHP+D Y+  +R+   +   E
Sbjct: 947  FAEPEADVYANHRKARELPIKE---RLKGEKDTLGIYLSGHPIDEYEGEIRRFARQRIVE 1003

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   R     +A M+V+ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1004 -LKPARDTQT-IAGMIVNLRVMKNKKGDKMGFITLDDRSGRIEASLF 1048


>gi|153947435|ref|YP_001400012.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis IP
            31758]
 gi|152958930|gb|ABS46391.1| DNA polymerase III, alpha subunit [Yersinia pseudotuberculosis IP
            31758]
          Length = 1160

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1050 (41%), Positives = 619/1050 (58%), Gaps = 48/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 64   PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDRLYVNLQ 187
              I   WL +   EGLI+L+GG  G + + F    +QV   + L F ++ F D  Y+ L 
Sbjct: 114  PIIDRDWLIK-HKEGLILLSGGRMGDVGK-FLLRGNQVQVDQCLAFYQEHFPDCYYLELI 171

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R  +       V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP
Sbjct: 172  RTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRP 231

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E      
Sbjct: 232  KNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEM----- 286

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+ L  KA  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +
Sbjct: 287  STEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVME 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP D
Sbjct: 407  CMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLD 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++  
Sbjct: 467  PGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
             P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     +D
Sbjct: 526  APLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPID 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ +
Sbjct: 586  IASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQS 645

Query: 658  IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  A
Sbjct: 646  GMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V
Sbjct: 766  LVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHV 825

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D+  I Y + AIKGVG      I+EA  +   F  L D C+RVD+KKLN+R+LE L+ +
Sbjct: 826  NDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMS 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN- 947
            GA D  G  R  L+ SL +  K A    K       ++F    G  +D     + S  N 
Sbjct: 886  GAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQSYANV 941

Query: 948  ----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                  V  + E+  LG Y +GHP+  Y K I R  G    ++   T RG       +V+
Sbjct: 942  PPWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVI 1001

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG  T  + +   E   F
Sbjct: 1002 AARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|332095123|gb|EGJ00155.1| DNA polymerase III subunit alpha [Shigella boydii 5216-82]
          Length = 1144

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1040 (41%), Positives = 624/1040 (60%), Gaps = 54/1040 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            +L            +  + +L     GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59   DLLGDE--------LTHLTVLAVNNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953
             SL N  K A    K       ++F    G  ++    E   +E S          V  +
Sbjct: 884  NSLGNALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935

Query: 954  NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++G
Sbjct: 936  GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 995

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +RIG  T  + +   E   F
Sbjct: 996  NRIGICTLDDRSGRLEVMLF 1015


>gi|78485459|ref|YP_391384.1| DNA polymerase III, alpha subunit [Thiomicrospira crunogena XCL-2]
 gi|78363745|gb|ABB41710.1| DNA polymerase III, alpha subunit [Thiomicrospira crunogena XCL-2]
          Length = 1158

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1051 (41%), Positives = 627/1051 (59%), Gaps = 71/1051 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YS+++  + + + +      QQPA+A+TD  N+F+ ++F   A  AGI+PI
Sbjct: 4    FVHLHVHSEYSVVDSTIRVKSAISLAQKSQQPALALTDQMNMFALVKFYTAAMDAGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----GK 126
            IG  L I+ +D              V  +V L    +GY  L  L+S  YL +Q      
Sbjct: 64   IGSDLLIEAEDG------------NVFKVVCLCQNDQGYLNLSHLISMAYLKNQKVVQND 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E   EGLI+L+GG  G + +A       +A KR+  +   F DR Y+ L
Sbjct: 112  MKALIKQEWLAEF-NEGLIILSGGKDGDVGQAILAEKPNLAAKRVSWWASYFPDRFYLEL 170

Query: 187  QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R  R  +    +  V +A  +ELP+VATN+  F   ED++AH+V + +    ++   +R
Sbjct: 171  IRTGRDKEELYIAGAVDVAQRYELPVVATNDIRFEQAEDFDAHEVRVCIHDGYILDDPNR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            P R + + Y ++  EMV +F D+PEA+ENTVEIA+RC+  L +    LP F   E    D
Sbjct: 231  PKRYSEEQYYRSSEEMVKLFEDIPEAIENTVEIAKRCNVSLTLGTYFLPDFPVPEGLTLD 290

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +    E  +  ++ +  L   L+  A A+   A  Y  RL FEL++I +M F GYF IVA
Sbjct: 291  EYFILESQKGLDERLNFLFGDLSPEAFAEKRKA--YDDRLKFELDIITQMGFPGYFFIVA 348

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQW K + +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 349  DFIQWGKNHQVPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 408

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RRDEVI YV  +YG + V+QI+TFG++ AKA +RDVGR L   Y  VD + KLIPN
Sbjct: 409  FCMERRDEVIDYVARQYGQDHVSQIVTFGTMAAKAVVRDVGRVLGNGYGMVDSIAKLIPN 468

Query: 482  DPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            D    + LQ   D + + +E    +  V  L++++ KLEG  R+   HA G+VIG +PL 
Sbjct: 469  DLG--IKLQGALDQEEQLQERYDNEEDVRLLIDLALKLEGTVRNTGKHAGGVVIGPKPLD 526

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL---AQRGVK-- 595
               P+  +      VTQ +   +E AGL+KFDFLGL+TLT++  +L F+    Q G +  
Sbjct: 527  HFCPVLCEPDGSSVVTQLDKNDVETAGLVKFDFLGLRTLTIIDWALHFINEGKQPGDEGF 586

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            V++  IP DD +T+ L+ T  T G+FQLESSGM+  +  ++PDC EDIIALV+L+RPGP+
Sbjct: 587  VEIERIPLDDSQTFDLIKTGKTTGVFQLESSGMQNLIVRLRPDCFEDIIALVALFRPGPL 646

Query: 656  DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            ++ +V N   RK+GKEK+        H  +  +L+ T GVI+YQEQVMQIAQ+L+GY+L 
Sbjct: 647  ESGMVDNFIARKHGKEKVSYPDAQYQHDSLKTILEPTYGVILYQEQVMQIAQVLAGYTLG 706

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  F  GA KN +   +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 707  GADMLRRAMGKKKPEEMAKQRSIFKDGAIKNNVDGDLAMKIFDLVEKFAGYGFNKSHSAA 766

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQ+AW+KTHYP EF+AA ++ +MDN +K+     +     I +  PS+N   + F
Sbjct: 767  YALVSYQSAWLKTHYPAEFMAAQISSDMDNTDKVVHMVNECYAMGIDVAQPSINEGEIHF 826

Query: 829  KV--GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            K   G   + Y L AIKGVG +    I+ E   + P+  L DFC RV ++K+N+RV+E+L
Sbjct: 827  KAIRGQKAVRYGLGAIKGVGESALEGIVAERKQNGPYQDLFDFCLRV-TRKVNKRVIEAL 885

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + AGA+DC   +R  +L S+    + A+  +K+      ++F            +  F  
Sbjct: 886  ISAGAMDCIHNNRQAMLDSVGMALQKAEQKQKDEEAGQTDLFGD----------VTSFEA 935

Query: 946  ENSS-----------VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--- 991
            EN S           +R + E+ VLG Y +GHP+++Y+  L KM     E+ ++ +R   
Sbjct: 936  ENESKLVDVPEMPEKLRLKGEKDVLGLYMTGHPIEIYREELDKM----VEQKLSALRPEK 991

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             N    A ++V  + K TR GSR+G++   +
Sbjct: 992  WNKKWAAGLIVEARNKVTRNGSRMGFLAIDD 1022


>gi|261822584|ref|YP_003260690.1| DNA polymerase III subunit alpha [Pectobacterium wasabiae WPP163]
 gi|261606597|gb|ACX89083.1| DNA polymerase III, alpha subunit [Pectobacterium wasabiae WPP163]
          Length = 1160

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1051 (41%), Positives = 621/1051 (59%), Gaps = 50/1051 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ K AA   PA+AITD  NL   ++F   A  AG++
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    ++  D L            +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 64   PIIGADFYVE-SDELG---------DELAHLTVLAMNNEGYQNLTLLISHAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+GG  G + R     +   AE+ +  +++ F  R Y+ L R
Sbjct: 114  PTIDRDWLIE-HQEGLILLSGGRRGDVGRFLLRGNQAQAEQCVAFYQEHFPQRYYLELTR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   V+LA  + LP+VATN   F+S +D++AH++ +A+     +    R
Sbjct: 173  TSRPDE--ESYIHSAVELATKYGLPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E     
Sbjct: 231  PRHYSPQQYMRSEEEMCELFADIPEALVNSVEIAKRCNVTIRLGEYFLPQFPTGEM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                + L   +  GLE RL         +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -STADFLVQCSKKGLEDRLEFLFPDPEVRAARRLEYDERLDIELGVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     +
Sbjct: 525  FAPLYCDSEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKQGQEPI 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK   EM KQ+  F  GA   G++  +AV IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+  I Y + AIKGVG      I+EA +    F  L D C+R D KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            +GA D  G  R  L+ SL +  K A    K       ++F    G  +D     + S   
Sbjct: 885  SGAFDRLGPHRAALMNSLADALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQSYST 940

Query: 948  -----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                   V  + E+  LG Y +GHP+  Y K I R  G    ++   T RG       +V
Sbjct: 941  VPPWPEQVVLDGERETLGLYLTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTAVGLV 1000

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++ +   T++G+RIG  T  + +   E   F
Sbjct: 1001 LAARVMVTKRGNRIGVCTLDDRSGRLEIMLF 1031


>gi|229837766|ref|ZP_04457926.1| DNA polymerase III, alpha chain [Yersinia pestis Pestoides A]
 gi|229840988|ref|ZP_04461147.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis
            str. PEXU2]
 gi|229843089|ref|ZP_04463239.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis
            str. India 195]
 gi|229903544|ref|ZP_04518657.1| DNA polymerase III, alpha chain [Yersinia pestis Nepal516]
 gi|229679314|gb|EEO75417.1| DNA polymerase III, alpha chain [Yersinia pestis Nepal516]
 gi|229689965|gb|EEO82024.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis
            str. India 195]
 gi|229697354|gb|EEO87401.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis
            str. PEXU2]
 gi|229704143|gb|EEO91155.1| DNA polymerase III, alpha chain [Yersinia pestis Pestoides A]
 gi|320014193|gb|ADV97764.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Medievalis
            str. Harbin 35]
          Length = 1160

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1050 (41%), Positives = 619/1050 (58%), Gaps = 48/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 64   PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDRLYVNLQ 187
              I   WL +   EGLI+L+GG  G + + F    +QV   + L F ++ F D  Y+ L 
Sbjct: 114  PIIDRDWLIK-HKEGLILLSGGRMGDVGK-FLLRGNQVQVDQCLAFYQEHFPDCYYLELI 171

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R  +       V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP
Sbjct: 172  RTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRP 231

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E      
Sbjct: 232  KNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEM----- 286

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+ L  KA  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +
Sbjct: 287  STEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVME 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP D
Sbjct: 407  CMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLD 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++  
Sbjct: 467  PGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
             P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     +D
Sbjct: 526  APLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPID 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ +
Sbjct: 586  IASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQS 645

Query: 658  IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  A
Sbjct: 646  GMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V
Sbjct: 766  LVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHV 825

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D+  I Y + AIKGVG      I+EA  +   F  L D C+RVD+KKLN+R+LE L+ +
Sbjct: 826  NDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMS 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN- 947
            GA D  G  R  L+ SL +  K A    K       ++F    G  +D     + S  N 
Sbjct: 886  GAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQSYANV 941

Query: 948  ----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                  V  + E+  LG Y +GHP+  Y K I R  G    ++   T RG       +V+
Sbjct: 942  PPWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVI 1001

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG  T  + +   E   F
Sbjct: 1002 AARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|37524688|ref|NP_928032.1| DNA polymerase III subunit alpha [Photorhabdus luminescens subsp.
            laumondii TTO1]
 gi|36784113|emb|CAE12982.1| DNA polymerase III alpha subunit [Photorhabdus luminescens subsp.
            laumondii TTO1]
          Length = 1160

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1049 (41%), Positives = 622/1049 (59%), Gaps = 46/1049 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G    + ++ K+A    PA AITD  NL   + F   A  AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTSPLVKKVAQLGMPAFAITDFTNLCGLVRFYGSAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  ++  L              S+ +L     GY  L  L+S  Y    G   
Sbjct: 64   PIIGA--DFYVESELLGDEHA--------SLTILARNNTGYHNLTLLISEAYQKGYGAIG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL     EGLI+L+GG  G + +     +  + ++ L  +++ F    Y+ L R
Sbjct: 114  PTIKQEWLIN-HKEGLILLSGGRMGDVGKFLLRGNQAMVDQCLEFYQEHFPGCYYLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V LA    LP+VATN+  F+  ED++AH++ +A+     ++   RP+
Sbjct: 173  TGRADEESYLHAAVALATEKSLPVVATNDVCFIDGEDFDAHEIRVAIHDGYTLADPKRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL++  EM  +F+D+PEALEN+VEIA+RC+  +++    LP+F   E       
Sbjct: 233  NYSPQQYLRSEQEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPTGEM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L N++  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLINRSQQGLEERLAFLYPDPKVRAEKRPEYDERLDIELRVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDLVIDHVADMYGRNAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFS 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     +D+
Sbjct: 527  PLYCDPEGLNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRTKKGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLNDAKSFDMLQRAETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEK-----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+     I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDIQWQHESLQPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA K GI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEDGAKKLGINGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLIDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA   D  F  L D C+RVD+KKLNRRV+E L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARQKDGYFRELFDLCARVDTKKLNRRVMEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A D  G  R  L+ SL++  K A    K       ++F    G  ++     + S  N S
Sbjct: 887  AFDRLGPHRAALMSSLEDALKAADQHAKAEATGQTDMF----GVLAEAPEEVERSYANIS 942

Query: 950  -----VRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                 +  + E+  LG Y +GHP+  Y K I R       ++   T RG    +  +V++
Sbjct: 943  QWPEQIVLDGERETLGLYLTGHPITRYLKEIERYTSGLRLKDVNPTPRGQVTTVIGLVLA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 SKVIITKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|227326551|ref|ZP_03830575.1| DNA polymerase III subunit alpha [Pectobacterium carotovorum subsp.
            carotovorum WPP14]
          Length = 1160

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1049 (41%), Positives = 618/1049 (58%), Gaps = 46/1049 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ K AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    ++  D L            +  + +L     GYQ L  L+S  Y    G   
Sbjct: 64   PIIGADFCVE-SDELG---------DELAHLTVLAMNNAGYQNLTLLISHAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+GG  G + R     +   AE+ L  +++ F  R Y+ L R
Sbjct: 114  PTIDRDWLIE-HQEGLILLSGGRRGDVGRFLLRGNQAQAEQCLAFYQEHFPQRYYLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA  H +P+VATN   F+S +D++AH++ +A+     +    RPR
Sbjct: 173  TSRPDEESYLHAAVELATKHGIPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L   +  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVQCSKKGLEERLEFLFPDPEVRAERRPEYDERLDIELGVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     +D+
Sbjct: 527  PLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKQGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   G++  +AV IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKNPVEMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947
            A D  G  R  L+ SL +  K A    K       ++F    G  +D     + S     
Sbjct: 887  AFDRLGPHRAALMNSLPDALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQSYSTVP 942

Query: 948  ---SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP+  Y K I R  G    ++   T RG       +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTAVGLVLA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLEIMLF 1031


>gi|197119463|ref|YP_002139890.1| DNA polymerase III subunit alpha [Geobacter bemidjiensis Bem]
 gi|197088823|gb|ACH40094.1| DNA polymerase III, alpha subunit [Geobacter bemidjiensis Bem]
          Length = 1156

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1041 (39%), Positives = 628/1041 (60%), Gaps = 26/1041 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S +FVHL +HS YSLL+GA+ + ++L K+     PA+A+TD  N+F  LEF  K    G+
Sbjct: 3    STNFVHLHLHSQYSLLDGAIRIGDLLKKVKECHMPAVAMTDHGNMFGTLEFYLKCKDKGV 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-K 126
            +PI+G ++ I  QD             +   ++LL     G++ L  LVS  Y   +G  
Sbjct: 63   KPILGSEVYIAPQDRFLKQAPSSPGQASSYHLILLCENMTGFKNLSYLVSAGY--KEGFY 120

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT--FKKLFGDRLYV 184
            +  RI    L +   EGLI+L+    G +  A+    +++ E R     + + F    Y+
Sbjct: 121  RRPRIDKELLLK-HKEGLIVLSACLQGEV--AYLAGRNKMDEARAAASWYAENFPGSYYI 177

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ ++  ++     +++++A   +LPLVATN+  +L+ ED  AH++L+ +     +S  
Sbjct: 178  ELQENKLPEQDIANRRLMEIAREMDLPLVATNDCHYLNREDARAHEILLCIQTGKTMSDP 237

Query: 244  DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                 + D  Y+K   EM   F   PEA+ENTV+IA RC+          P +   E + 
Sbjct: 238  THMAFSVDEFYVKTPQEMAQAFHYAPEAIENTVKIAERCNLEFDFKTYYFPAYEAPEGET 297

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLI 359
            + ++ E E    A  GL  RL +  I         Q Y  RL  EL+ I +M F GYFLI
Sbjct: 298  LDQQLERE----ATVGLVERLKKIRIKYNLTEEQEQAYHARLRIELDCIKQMGFPGYFLI 353

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK + IPVGPGRGS AGS+ A+ + ITDIDP+ ++LLFERFLNP+R+SMPD D
Sbjct: 354  VADFINWAKDHGIPVGPGRGSAAGSLVAFCIRITDIDPMPYNLLFERFLNPERISMPDID 413

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFCQDRR+EVI+Y+  KYG E+V QIITFG++ A+  +RDVGRAL + + +VDR+ KL+
Sbjct: 414  VDFCQDRREEVIQYMVEKYGREKVCQIITFGTMAARGVIRDVGRALDLTFGEVDRIAKLV 473

Query: 480  PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P      ++L +A+  + + +E   ADP V  ++ ++ +LEGL RHASTHAAG+V+  R 
Sbjct: 474  PE--VLGITLDKALEQEPKLKELMAADPKVKEVMTVALRLEGLARHASTHAAGLVVAPRQ 531

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            + +  P+Y+D ++    TQ++MK++EK GL+KFDFLGLK LT++  +   +   +    D
Sbjct: 532  MEEFCPVYKDQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIDNACKHIRNGKDPNFD 591

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++L+  DD E+Y LL    T G+FQLESSGM++ L  ++P C EDIIA+ +LYRPGP+ +
Sbjct: 592  ITLLRDDDEESYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLGS 651

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  +  RK+G+++ V   P ++P+LK+T GVI+YQEQVMQI++ L+GYSL  AD+LRR
Sbjct: 652  GMVDDFIERKHGRKQTVYDLPQLEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGADLLRR 711

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  E+M K++++F+ G+ K G+       IF+L+AKFA+YGFNKSH+AAYA+++YQ
Sbjct: 712  AMGKKDAEQMAKERDKFLEGSEKLGLDGKKCAAIFDLMAKFAEYGFNKSHSAAYALVAYQ 771

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYPVEF+AA +T +M N +K+ K   D R+  I+++PP +N     F+V D  +
Sbjct: 772  TAFLKAHYPVEFMAALLTEDMGNTDKVIKSIGDCREMGIEVLPPDINESDRSFRVLDKAM 831

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             + L A+K VG      I+EA  D+PF  L DFC RVD +++N+RV+E+L+  GA DC G
Sbjct: 832  RFGLGAVKNVGEGAIEAIIEARGDEPFKDLFDFCERVDLRRVNKRVIEALIKCGAFDCTG 891

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE---KGTFSDKITLEKFSVENSSVRF 952
              R QL+  L++     Q V++ R +   ++F      +G       L +    +   R 
Sbjct: 892  AKRSQLMAGLEDAASAGQRVQQERESAQASLFGAAEIVRGANGGGNRLPEIPEWDEKYRL 951

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              E+  +GF+ +GHPLD Y   +R+         +     + +R+  +  S ++  T+KG
Sbjct: 952  GCEKEAIGFFITGHPLDRYVADMRRFSSVDCSTILDAKEKSEVRICGVPASVKELITKKG 1011

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
             R+ ++   +     E   FP
Sbjct: 1012 DRMAFLALEDLVGSVEVVVFP 1032


>gi|323165885|gb|EFZ51667.1| DNA polymerase III subunit alpha [Shigella sonnei 53G]
          Length = 1144

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1040 (41%), Positives = 625/1040 (60%), Gaps = 54/1040 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59   DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953
             SL +  K A    K       ++F    G  ++    E   +E S          V  +
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935

Query: 954  NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++G
Sbjct: 936  GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 995

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +RIG  T  + +   E   F
Sbjct: 996  NRIGICTLDDRSGRLEVMLF 1015


>gi|300816224|ref|ZP_07096447.1| DNA polymerase III subunit alpha [Escherichia coli MS 107-1]
 gi|309796361|ref|ZP_07690770.1| DNA polymerase III subunit alpha [Escherichia coli MS 145-7]
 gi|312970285|ref|ZP_07784467.1| DNA polymerase III subunit alpha [Escherichia coli 1827-70]
 gi|300531431|gb|EFK52493.1| DNA polymerase III subunit alpha [Escherichia coli MS 107-1]
 gi|308120065|gb|EFO57327.1| DNA polymerase III subunit alpha [Escherichia coli MS 145-7]
 gi|310337783|gb|EFQ02894.1| DNA polymerase III subunit alpha [Escherichia coli 1827-70]
 gi|323176499|gb|EFZ62091.1| DNA polymerase III subunit alpha [Escherichia coli 1180]
          Length = 1144

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1040 (41%), Positives = 625/1040 (60%), Gaps = 54/1040 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59   DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953
             SL +  K A    K       ++F    G  ++    E   +E S          V  +
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935

Query: 954  NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++G
Sbjct: 936  GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 995

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +RIG  T  + +   E   F
Sbjct: 996  NRIGICTLDDRSGRLEVMLF 1015


>gi|300824093|ref|ZP_07104213.1| DNA polymerase III subunit alpha [Escherichia coli MS 119-7]
 gi|300523370|gb|EFK44439.1| DNA polymerase III subunit alpha [Escherichia coli MS 119-7]
 gi|315616331|gb|EFU96949.1| DNA polymerase III subunit alpha [Escherichia coli 3431]
 gi|323160196|gb|EFZ46155.1| DNA polymerase III subunit alpha [Escherichia coli E128010]
 gi|323181692|gb|EFZ67106.1| DNA polymerase III subunit alpha [Escherichia coli 1357]
          Length = 1144

 Score =  773 bits (1996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1040 (41%), Positives = 625/1040 (60%), Gaps = 54/1040 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59   DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953
             SL +  K A    K       ++F    G  ++    E   +E S          V  +
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935

Query: 954  NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++G
Sbjct: 936  GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 995

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +RIG  T  + +   E   F
Sbjct: 996  NRIGICTLDDRSGRLEVMLF 1015


>gi|146308059|ref|YP_001188524.1| DNA polymerase III subunit alpha [Pseudomonas mendocina ymp]
 gi|145576260|gb|ABP85792.1| DNA polymerase III, alpha subunit [Pseudomonas mendocina ymp]
          Length = 1176

 Score =  773 bits (1996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1067 (41%), Positives = 632/1067 (59%), Gaps = 66/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL++H+ YSL++G + +  ++  +A    PA+A+TD +N+ S ++F + A  AG++P
Sbjct: 4    AFVHLRLHTEYSLVDGLVRVKPLIKAVAGAGMPAVAVTDMSNMCSLVKFYKTAMGAGVKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I  C  DI M      + +   P   +  + LL    +GY+ L EL+SR +   Q    V
Sbjct: 64   I--CGADIWMA-----SAEEDGP---LTRLTLLAMNPKGYRNLTELISRGWAEGQSNDLV 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+++   EGLI L+G   G +  A       +AE RL  +  +F DR Y+ +QR 
Sbjct: 114  IIQRDWVKD-AAEGLIALSGAREGEVGLALLAGDEALAETRLREWMAVFPDRFYLEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             R  D       V LA   E PLVATN+  F+ ++D+EAH+  + +     +    RPR 
Sbjct: 173  SRVGDEEYLHAAVSLADRVEAPLVATNDVRFIKQDDFEAHETRVCIGEGRTLDDPRRPRH 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK  +EM  +FSDLPEALENTVEIA+RC+  +Q+    LP F       I    
Sbjct: 233  YSDQQYLKTPAEMWELFSDLPEALENTVEIAKRCNIDVQLGKYFLPDFPTPNGMGI---- 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKG---YHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            ++ LR+ +  GLE RL Q  + K    Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DDYLRHASFEGLEERL-QVLLPKDTPDYEAKKQVYVDRLNFELDIIIQMGFPGYFLIVMD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 348  FIQWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDF 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV RA    Y   DRL K+IP +
Sbjct: 408  CMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSYGLADRLSKMIPFE 467

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   RE    D     + ++S KLEG+ R    HA G+VI    L+  
Sbjct: 468  VGMTLE-KAYEMEEPLREFLKNDEEAQEIWDMSLKLEGIVRGTGKHAGGVVIAPTKLTDF 526

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGV 594
             P+  D      VTQF+   +E+AGL+KFDFLGL+TLT+++ +++ +        A    
Sbjct: 527  SPIACDEEGGGLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWAMETIHRIQKRDGAADED 586

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V++  IP DD +TY +L    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP
Sbjct: 587  LVNIDFIPLDDKKTYDMLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALFRPGP 646

Query: 655  IDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + NRK+G+ ++   HP      ++P+LK T GVI+YQEQVMQIAQ+++GY+L
Sbjct: 647  LQSGMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGVILYQEQVMQIAQVMAGYTL 706

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  FI G + NGI   +A NIF+L+ KFA YGFNKSH+A
Sbjct: 707  GGADMLRRAMGKKKPEEMAKQRGGFIEGCANNGIDADLAGNIFDLVEKFAGYGFNKSHSA 766

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AY ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   ++I PP VN     
Sbjct: 767  AYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVILVEECRNMKLRIDPPDVNVSEFK 826

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D+ RI Y L A+KGVG      I+E  A+  PF  L DFC+RVD K++N+R LE+L
Sbjct: 827  FTVNDDGRIVYGLGAVKGVGEGPVEAIVECRAEGGPFKDLFDFCNRVDLKRINKRTLEAL 886

Query: 886  VFAGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929
            + +GALD  G                +R  LL S++   + A+   ++  + H ++F   
Sbjct: 887  IRSGALDRLGPYYQDELKAYQASVDKNRAVLLASMEEAVQSAEQTARSAESGHMDLFGGL 946

Query: 930  ----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                E   +++     +  ++    R + E+  LG Y SGHP+D Y+  +R+   +   E
Sbjct: 947  FAEPEADVYANHRKARELPIKE---RLKGEKDTLGIYLSGHPIDEYEGEIRRFARQRIVE 1003

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   R     +A M+V+ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1004 -LKPARDTQT-IAGMIVNLRVMKNKKGDKMGFITLDDRSGRIEASLF 1048


>gi|163801794|ref|ZP_02195691.1| DNA polymerase III subunit alpha [Vibrio sp. AND4]
 gi|159174302|gb|EDP59106.1| DNA polymerase III subunit alpha [Vibrio sp. AND4]
          Length = 1159

 Score =  773 bits (1996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1048 (40%), Positives = 624/1048 (59%), Gaps = 45/1048 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G   +  ++ K+A    PA+A+TD  NL   +++   A   G++
Sbjct: 4    PKFIHLRVHSDYSMVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGAAHGNGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  MQ +      G+     +  + LL +  EGY+ L  L+S+ YL    +  
Sbjct: 64   PIIGA--DFKMQSD----EFGEE----LTQLTLLAANNEGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E+ +EGLI+L+G  +G I +A    +  VAE  +  +++ F DR Y+ L R
Sbjct: 114  PVIDKTWLAEL-SEGLIVLSGAKNGEIGKALLKGNRTVAESCVAFYQEYFPDRFYLELVR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+ A   +LP+VATN  +F+ EE ++AH++ +A+     +    RP+
Sbjct: 173  TGRPDEETYLHFAVEFANETQLPVVATNEVVFIGEELFDAHEIRVAIHDGYTLEDPRRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P+ YL+   EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       E
Sbjct: 233  NYSPEQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM-----E 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E + L  K+  GLE RL         +     +Y  RL  EL+VI +M F GYFLIV +F
Sbjct: 288  ETDFLVMKSREGLEERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNSIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P DP
Sbjct: 408  MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +    E   AD  V  L++  + LEG  R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFKAEPALPELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  +     + +
Sbjct: 527  PIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPIQI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP  D  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + 
Sbjct: 587  ESIPLVDAASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTH+P EF+AA MT +MDN EK+     +  +  + ++PP +N     F V 
Sbjct: 767  VSYQTLWLKTHFPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINAGLYRFNVD 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +  I Y + AIKGVG      I+EA +    F  L DFC+R+D KK+N+RV+E L++AG
Sbjct: 827  QSGAIVYGIGAIKGVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIYAG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----KITLEKFS 944
            ALD  G  R  L+ SL++  K A    +       ++F    G  +D     +    +  
Sbjct: 887  ALDRLGPHRAALMASLNDAVKAASQHHQAEAFGQTDMF----GVLTDAPEEVEHKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  AWPEKVWLEGERETLGLYLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++GSRIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGSRIGIMTLDDRSGRMEVMLF 1030


>gi|51597303|ref|YP_071494.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis IP
            32953]
 gi|186896408|ref|YP_001873520.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis PB1/+]
 gi|51590585|emb|CAH22226.1| DNA polymerase III, alpha chain [Yersinia pseudotuberculosis IP
            32953]
 gi|186699434|gb|ACC90063.1| DNA polymerase III, alpha subunit [Yersinia pseudotuberculosis PB1/+]
          Length = 1171

 Score =  773 bits (1996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1056 (41%), Positives = 623/1056 (58%), Gaps = 49/1056 (4%)

Query: 4    YLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            YL+ + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A
Sbjct: 9    YLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSA 68

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              AGI+PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y  
Sbjct: 69   HGAGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQR 118

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDR 181
              G     I   WL +   EGLI+L+GG  G + + F    +QV   + L F ++ F D 
Sbjct: 119  GYGAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGK-FLLRGNQVQVDQCLAFYQEHFPDC 176

Query: 182  LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ L R  R  +       V LA    LP+VATN+  F+ E D++AH++ +A+     +
Sbjct: 177  YYLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTL 236

Query: 241  SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E
Sbjct: 237  VDPKRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGE 296

Query: 300  CDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                    E+ L  KA  GLE RL         +     +Y +RLD EL VI +M F GY
Sbjct: 297  M-----STEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGY 351

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMP
Sbjct: 352  FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMP 411

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ 
Sbjct: 412  DFDVDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 471

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI  
Sbjct: 472  KLIPLDPGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAP 530

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
              ++   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K 
Sbjct: 531  TKITDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKT 590

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+R
Sbjct: 591  GLEPIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFR 650

Query: 652  PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PGP+ + +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSG
Sbjct: 651  PGPLQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSG 710

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YSL  AD+LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKS
Sbjct: 711  YSLGGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKS 770

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+ 
Sbjct: 771  HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSG 830

Query: 825  CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVL 882
               F V D+  I Y + AIKGVG      I+EA  +   F  L D C+RVD+KKLN+R+L
Sbjct: 831  LYHFHVNDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRIL 890

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E L+ +GA D  G  R  L+ SL +  K A    K       ++F    G  +D     +
Sbjct: 891  EKLIMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMF----GVLADAPEQVE 946

Query: 943  FSVEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIR 996
             S  N       V  + E+  LG Y +GHP+  Y K I R  G    ++   T RG    
Sbjct: 947  QSYANVPPWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTT 1006

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 1007 AVGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|22126996|ref|NP_670419.1| DNA polymerase III subunit alpha [Yersinia pestis KIM 10]
 gi|45442559|ref|NP_994098.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Microtus
            str. 91001]
 gi|108806532|ref|YP_650448.1| DNA polymerase III subunit alpha [Yersinia pestis Antiqua]
 gi|108813101|ref|YP_648868.1| DNA polymerase III subunit alpha [Yersinia pestis Nepal516]
 gi|149366940|ref|ZP_01888973.1| DNA polymerase III, alpha chain [Yersinia pestis CA88-4125]
 gi|162420959|ref|YP_001607757.1| DNA polymerase III subunit alpha [Yersinia pestis Angola]
 gi|165927052|ref|ZP_02222884.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. F1991016]
 gi|165939826|ref|ZP_02228366.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. IP275]
 gi|166011915|ref|ZP_02232813.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. E1979001]
 gi|166211235|ref|ZP_02237270.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. B42003004]
 gi|167400078|ref|ZP_02305596.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. UG05-0454]
 gi|167419915|ref|ZP_02311668.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. MG05-1020]
 gi|167425342|ref|ZP_02317095.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Mediaevalis
            str. K1973002]
 gi|218928227|ref|YP_002346102.1| DNA polymerase III subunit alpha [Yersinia pestis CO92]
 gi|270487325|ref|ZP_06204399.1| DNA polymerase III subunit alpha [Yersinia pestis KIM D27]
 gi|294503076|ref|YP_003567138.1| DNA polymerase III subunit alpha [Yersinia pestis Z176003]
 gi|21960041|gb|AAM86670.1|AE013912_14 DNA polymerase III, alpha subunit [Yersinia pestis KIM 10]
 gi|45437424|gb|AAS62975.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Microtus str.
            91001]
 gi|108776749|gb|ABG19268.1| DNA polymerase III, alpha subunit [Yersinia pestis Nepal516]
 gi|108778445|gb|ABG12503.1| DNA polymerase III, alpha subunit [Yersinia pestis Antiqua]
 gi|115346838|emb|CAL19724.1| DNA polymerase III, alpha chain [Yersinia pestis CO92]
 gi|149290554|gb|EDM40630.1| DNA polymerase III, alpha chain [Yersinia pestis CA88-4125]
 gi|162353774|gb|ABX87722.1| DNA polymerase III, alpha subunit [Yersinia pestis Angola]
 gi|165912229|gb|EDR30866.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. IP275]
 gi|165920948|gb|EDR38172.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. F1991016]
 gi|165989181|gb|EDR41482.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. E1979001]
 gi|166207006|gb|EDR51486.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. B42003004]
 gi|166962656|gb|EDR58677.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. MG05-1020]
 gi|167050786|gb|EDR62194.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. UG05-0454]
 gi|167055742|gb|EDR65526.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Mediaevalis
            str. K1973002]
 gi|262361114|gb|ACY57835.1| DNA polymerase III subunit alpha [Yersinia pestis D106004]
 gi|262365354|gb|ACY61911.1| DNA polymerase III subunit alpha [Yersinia pestis D182038]
 gi|270335829|gb|EFA46606.1| DNA polymerase III subunit alpha [Yersinia pestis KIM D27]
 gi|294353535|gb|ADE63876.1| DNA polymerase III subunit alpha [Yersinia pestis Z176003]
          Length = 1171

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1056 (41%), Positives = 623/1056 (58%), Gaps = 49/1056 (4%)

Query: 4    YLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            YL+ + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A
Sbjct: 9    YLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSA 68

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              AGI+PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y  
Sbjct: 69   HGAGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQR 118

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDR 181
              G     I   WL +   EGLI+L+GG  G + + F    +QV   + L F ++ F D 
Sbjct: 119  GYGAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGK-FLLRGNQVQVDQCLAFYQEHFPDC 176

Query: 182  LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ L R  R  +       V LA    LP+VATN+  F+ E D++AH++ +A+     +
Sbjct: 177  YYLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTL 236

Query: 241  SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E
Sbjct: 237  VDPKRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGE 296

Query: 300  CDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                    E+ L  KA  GLE RL         +     +Y +RLD EL VI +M F GY
Sbjct: 297  M-----STEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGY 351

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMP
Sbjct: 352  FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMP 411

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ 
Sbjct: 412  DFDVDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 471

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI  
Sbjct: 472  KLIPLDPGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAP 530

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
              ++   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K 
Sbjct: 531  TKITDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKT 590

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+R
Sbjct: 591  GLEPIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFR 650

Query: 652  PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PGP+ + +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSG
Sbjct: 651  PGPLQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSG 710

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YSL  AD+LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKS
Sbjct: 711  YSLGGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKS 770

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+ 
Sbjct: 771  HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSG 830

Query: 825  CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVL 882
               F V D+  I Y + AIKGVG      I+EA  +   F  L D C+RVD+KKLN+R+L
Sbjct: 831  LYHFHVNDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRIL 890

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E L+ +GA D  G  R  L+ SL +  K A    K       ++F    G  +D     +
Sbjct: 891  EKLIMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMF----GVLADAPEQVE 946

Query: 943  FSVEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIR 996
             S  N       V  + E+  LG Y +GHP+  Y K I R  G    ++   T RG    
Sbjct: 947  QSYANVPPWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTT 1006

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 1007 AVGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|332098772|gb|EGJ03732.1| DNA polymerase III subunit alpha [Shigella boydii 3594-74]
          Length = 1144

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1040 (41%), Positives = 625/1040 (60%), Gaps = 54/1040 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59   DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNG++  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGVNAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953
             SL +  K A    K       ++F    G  ++    E   +E S          V  +
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935

Query: 954  NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++G
Sbjct: 936  GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 995

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +RIG  T  + +   E   F
Sbjct: 996  NRIGICTLDDRSGRLEVMLF 1015


>gi|332097598|gb|EGJ02575.1| DNA polymerase III subunit alpha [Shigella dysenteriae 155-74]
          Length = 1144

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1040 (41%), Positives = 623/1040 (59%), Gaps = 54/1040 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            +L            +  + +L     GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59   DLLGDE--------LTHLTVLAVNNTGYQNLTLLISKAYQRGYGPAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L   A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKSAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953
             SL N  K A    K       ++F    G  ++    E   +E S          V  +
Sbjct: 884  NSLGNALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935

Query: 954  NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++G
Sbjct: 936  GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 995

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +RIG  T  + +   E   F
Sbjct: 996  NRIGICTLDDRSGRLEVMLF 1015


>gi|170023330|ref|YP_001719835.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis YPIII]
 gi|169749864|gb|ACA67382.1| DNA polymerase III, alpha subunit [Yersinia pseudotuberculosis YPIII]
          Length = 1171

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1056 (41%), Positives = 623/1056 (58%), Gaps = 49/1056 (4%)

Query: 4    YLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            YL+ + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A
Sbjct: 9    YLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSA 68

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              AGI+PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y  
Sbjct: 69   HGAGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQR 118

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDR 181
              G     I   WL +   EGLI+L+GG  G + + F    +QV   + L F ++ F D 
Sbjct: 119  GYGAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGK-FLLRGNQVQVDQCLAFYQEHFPDC 176

Query: 182  LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ L R  R  +       V LA    LP+VATN+  F+ E D++AH++ +A+     +
Sbjct: 177  YYLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTL 236

Query: 241  SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E
Sbjct: 237  VDPKRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGE 296

Query: 300  CDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                    E+ L  KA  GLE RL         +     +Y +RLD EL VI +M F GY
Sbjct: 297  M-----STEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGY 351

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMP
Sbjct: 352  FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMP 411

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ 
Sbjct: 412  DFDVDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 471

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI  
Sbjct: 472  KLIPLDPGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAP 530

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
              ++   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K 
Sbjct: 531  TKITDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINVRRAKT 590

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+R
Sbjct: 591  GLEPIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFR 650

Query: 652  PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PGP+ + +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSG
Sbjct: 651  PGPLQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSG 710

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YSL  AD+LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKS
Sbjct: 711  YSLGGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKS 770

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+ 
Sbjct: 771  HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSG 830

Query: 825  CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVL 882
               F V D+  I Y + AIKGVG      I+EA  +   F  L D C+RVD+KKLN+R+L
Sbjct: 831  LYHFHVNDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRIL 890

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E L+ +GA D  G  R  L+ SL +  K A    K       ++F    G  +D     +
Sbjct: 891  EKLIMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMF----GVLADAPEQVE 946

Query: 943  FSVEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIR 996
             S  N       V  + E+  LG Y +GHP+  Y K I R  G    ++   T RG    
Sbjct: 947  QSYANVPPWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTT 1006

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 1007 AVGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|321222185|gb|EFX47257.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica
            serovar Typhimurium str. TN061786]
          Length = 1144

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1040 (41%), Positives = 621/1040 (59%), Gaps = 54/1040 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K A+   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVH--- 57

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 58   NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R  R  +       
Sbjct: 110  EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEALENTVEIA+RC+  +++    LP+F   +        E+ L  KA  GL
Sbjct: 230  MCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDYLVKKAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   ++ +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLA-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953
             SL +  K A    K       ++F    G  ++    E   +E S          V  +
Sbjct: 884  NSLGDALKAADQHAKAEAIGQTDMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935

Query: 954  NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             E+  LG Y +GHP++ Y K I R +G    ++   T RG     A +V++ +   T++G
Sbjct: 936  GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRG 995

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +RIG  T  + +   E   F
Sbjct: 996  NRIGICTLDDRSGRLEVMLF 1015


>gi|269138108|ref|YP_003294808.1| DNA polymerase III, alpha subunit [Edwardsiella tarda EIB202]
 gi|267983768|gb|ACY83597.1| DNA polymerase III, alpha subunit [Edwardsiella tarda EIB202]
 gi|304558152|gb|ADM40816.1| DNA polymerase III alpha subunit [Edwardsiella tarda FL6-60]
          Length = 1162

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1057 (40%), Positives = 628/1057 (59%), Gaps = 60/1057 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL VHS YS+++G      ++ K+AA   PA AITD  NL   ++F   A  AGI+
Sbjct: 4    PRFIHLHVHSDYSMIDGLAKTAPLVKKVAALGMPAFAITDHTNLCGLVKFYGSAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P++G  + +          + +T    + ++ +L    EGYQ L +L+S  Y    G + 
Sbjct: 64   PLVGADVLV----------RSETMGDELSALTILACDNEGYQNLTQLISHAYQRGYGAEG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL      GLI+L+G   G + +     +  +  + +  +++ F D  ++ L R
Sbjct: 114  PTIDRDWLIAY-RAGLILLSGARHGDVGKLLLRGNQTLVGECVDFYQQHFPDSYFLELVR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   V+LA   +LPLVATN+  FL   D++AH++ +A+     +    R
Sbjct: 173  TGRPDE--ESYLHLAVELAQQRDLPLVATNDVRFLEASDFDAHEIRVAIHDGYTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +   Y+++  EM  +F+DLPEAL+N+VEIA+RC+  +++    LP+F   E     
Sbjct: 231  PRNYSAQQYMRSEEEMCELFADLPEALQNSVEIAKRCNVTIRLGQYFLPQFPTGEM---- 286

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  KA  GLE RL+     +   A+    Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDFLVKKAHEGLEERLSFLFPDEADRARLRPPYDERLEIELKVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLAFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD VI +V + YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDRVIDHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  +     V
Sbjct: 525  FAPLYCDAEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRARQGLDPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDQKSFDILQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E++        H  + P+L+ T GVI+YQEQVMQIAQ+L+GYSL  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDREWQHESLKPVLEPTYGVILYQEQVMQIAQVLAGYSLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG++  +A++IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADLLRRAMGKKKPEEMAKQRSVFEEGARNNGVNGELAMHIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYHFH 824

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSKKLNRRVLESL 885
            V D   I Y + AIKGVG      I+EA        F  L D C+R D+KKLNRRV+E L
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARTDTKKLNRRVMEKL 884

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + +GA D  G  R  L+ SL++  K A+   +       ++F    G  ++    E   V
Sbjct: 885  IMSGAFDRLGPHRAALMSSLNDALKAAEQHARAEAIGQADMF----GVLAE----EPEQV 936

Query: 946  ENS---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNI 995
            E S          +  + E+  LG Y +GHP+  Y K I R  G    ++   T RG   
Sbjct: 937  EQSYGSVPPWPVQMVLDGERETLGLYLTGHPITQYLKEIERYAGGGRLKDMHPTDRGKMT 996

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +V+  +   T++G+RIG  T  + +   E   F
Sbjct: 997  TAVGLVLGARVMTTKRGNRIGMCTLDDRSGRLEVMLF 1033


>gi|309787142|ref|ZP_07681754.1| DNA polymerase III subunit alpha [Shigella dysenteriae 1617]
 gi|308924720|gb|EFP70215.1| DNA polymerase III subunit alpha [Shigella dysenteriae 1617]
          Length = 1144

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1040 (41%), Positives = 625/1040 (60%), Gaps = 54/1040 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59   DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  +
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEED 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVSLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953
             SL +  K A    K       ++F    G  ++    E   +E S          V  +
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935

Query: 954  NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++G
Sbjct: 936  GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 995

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +RIG  T  + +   E   F
Sbjct: 996  NRIGICTLDDRSGRLEVMLF 1015


>gi|297569370|ref|YP_003690714.1| DNA polymerase III, alpha subunit [Desulfurivibrio alkaliphilus AHT2]
 gi|296925285|gb|ADH86095.1| DNA polymerase III, alpha subunit [Desulfurivibrio alkaliphilus AHT2]
          Length = 1192

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1048 (41%), Positives = 631/1048 (60%), Gaps = 45/1048 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YS+L+GA+ L+ +L +       A+AITD   +F ALEF  KA  AGI+P
Sbjct: 14   GFVHLHVHTQYSMLDGAIRLDRLLAQCKEYGMEAVAITDHGAMFGALEFYVKAKKAGIKP 73

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  +   D  +     K+       +VLL    EGYQ L++L S     +      
Sbjct: 74   IIGCEFYVAPAD--RRDKSAKSAGAAAHHLVLLAMNNEGYQNLMKLAS-CAQFEGFHYKP 130

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L     +GLI LT    G +           A+      +KLF DRLY+ LQ  
Sbjct: 131  RIDYELLSR-HNQGLIALTACLHGQLPMLLTRGDYDGAKAAAGKLQKLFPDRLYLELQE- 188

Query: 190  RGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
               ++  E Q V     +LA   +LPLVATN+  +L+ E+ +AH+VL+ +     ++ + 
Sbjct: 189  ---NKIAEQQTVNDGLKKLAAELKLPLVATNDCHYLNREEAQAHEVLLCIQTGKTMADQG 245

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R + D  + K+ +EM   FS  PEA+  TV++A RC+  L + +   P F   E + +
Sbjct: 246  RFRFSTDELFFKSPAEMKKSFSHCPEAIAETVKVAARCNVELDLSSHHFPHFPIPEGETL 305

Query: 304  QKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                E+     A  GLE R  +            ++YR RL+ E++VI +M F GYFLIV
Sbjct: 306  ----ESVFSKDAREGLEKRFTEIRRLTELTPEQEEEYRARLEHEIDVIIKMGFPGYFLIV 361

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFI WAK + IPVGPGRGSGAGS+ A+A+ ITDIDP+ + L+FERFLN +R SMPDFD+
Sbjct: 362  ADFINWAKDHEIPVGPGRGSGAGSLVAWAMRITDIDPMPYGLIFERFLNIERKSMPDFDV 421

Query: 421  DFCQDRRDEVIRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            DFCQ+RR EVI YVQ KYG  E VAQI+T+GS++A+A +RDVGRAL MPY +VDR+ KLI
Sbjct: 422  DFCQERRGEVIEYVQQKYGGAEHVAQIVTYGSMKARAVVRDVGRALGMPYGEVDRIAKLI 481

Query: 480  PNDPAHPVSLQAIADDSRFREARLAD-----PSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            P +      L    D +  +E RL D     P V  LL  ++ LEGL RH STHAAG+VI
Sbjct: 482  PEE------LGITLDKAIDKEPRLGDLMKREPPVAELLNAARVLEGLQRHTSTHAAGVVI 535

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRG 593
              +P+ + +P+ +  + ++ +TQ++MK  E  GLIKFDFLGLKTLT++ ++   +    G
Sbjct: 536  SPKPMVEYLPLCKGPKGEV-LTQYDMKHTEMTGLIKFDFLGLKTLTVIDRACKLIKGDLG 594

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             ++D+  I  DD +TY LL     LG+FQLESSGMR  L  M+P+   D+IALV+LYRPG
Sbjct: 595  REIDIGAIATDDPKTYDLLCKGDALGVFQLESSGMRSLLMKMKPEQFSDLIALVALYRPG 654

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            P+++ +V  + N K+G+  +V+ +PL  ++P+L+ET GVI+YQEQVM+IA +L+GYSL +
Sbjct: 655  PLESGMVDDFVNTKHGR--MVAKYPLPQLEPILQETYGVIVYQEQVMKIANVLAGYSLGD 712

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD LRRAMGKKI   MD +K++F++G +KN I    A  IF+L+AKFA YGFNKSH+AAY
Sbjct: 713  ADNLRRAMGKKIAAVMDAEKDKFMAGCAKNNIDPKKAEYIFDLMAKFAGYGFNKSHSAAY 772

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+++YQTAW+K HYP +F+AA ++ +M N +K+ ++  + ++  I+++PP +N    DF 
Sbjct: 773  ALVAYQTAWLKAHYPAQFMAALLSCDMGNTDKVVRYINECKEHEIEVLPPDINESFRDFT 832

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V D+RI + LAA+K VG      I+E   AD P+ SL DFC RVD +K+NRRV+ESL+ A
Sbjct: 833  VIDDRIRFGLAAVKNVGGAALESIIEIREADGPYKSLVDFCQRVDGRKVNRRVIESLIRA 892

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---EKGTFSDKITLEKFSV 945
            GA D  G  R QL   LD     AQ  ++++ +   ++FA    ++   + +I L +   
Sbjct: 893  GAFDSLGAKRSQLEAILDRALDQAQAAQRDKLSGQISLFAAMPTDQAERATEIELPEMPE 952

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                 +   E+  +GFY +GHPLD ++  L  +                 R+  ++   +
Sbjct: 953  WEEKQKLLFEKETVGFYLTGHPLDKHRRELAALTDTDLHGLAEWPDNQPARIGGLIRQFK 1012

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +++KG  + +VT  +     E   FP
Sbjct: 1013 NHRSKKGDAMAFVTLEDTVDSVEVVVFP 1040


>gi|148264552|ref|YP_001231258.1| DNA polymerase III, alpha subunit [Geobacter uraniireducens Rf4]
 gi|146398052|gb|ABQ26685.1| DNA polymerase III, alpha subunit [Geobacter uraniireducens Rf4]
          Length = 1157

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1030 (41%), Positives = 630/1030 (61%), Gaps = 29/1030 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSLL+GA+ L +++ K    + PA+AITD  ++F A+EF  K    GI+P
Sbjct: 5    NFVHLHLHTQYSLLDGAIRLGDLVKKAKGYEMPAVAITDHGSMFGAIEFYTKCKDKGIKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128
            IIG ++ I         +       +   ++LL    +GY+ L  LVS  Y   +G    
Sbjct: 65   IIGSEVYIAPGSRFSKESGNGHESTSSYHLILLCENLQGYKNLSWLVSAGY--KEGFYYK 122

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L +  +EGLI L+    G +      N  + A      + ++F DR Y+ LQ 
Sbjct: 123  PRIDKEILAQ-HSEGLIALSACLKGEVAYQCGRNRVEDAIATARWYSEIFPDRYYIELQE 181

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++     +++ LA    LPLVATN+  +L+ ED +AH+VL+ +     ++  +R  
Sbjct: 182  NTLPEQDLVNKRLLDLAAELSLPLVATNDCHYLNREDAKAHEVLLCIQTGKTMNDPNRMH 241

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---EKECDDI 303
             + +  Y K+  EM + F   PEA+ NTV IA RC+  L       P++I   +K  DD+
Sbjct: 242  FSAEEFYFKSPQEMAAAFHYAPEAIANTVRIAERCNLELDFKTYHFPQYIKPADKTLDDV 301

Query: 304  QKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +E+  E       GL+ RL    A+         Q Y +RL  EL+ I +M F GYFLI
Sbjct: 302  LEEQSYE-------GLKERLVTVRAKYPDITPEQEQGYYERLRIELDCIKQMGFPGYFLI 354

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK + IPVGPGRGS AGS+ AY++ ITDIDP+ ++LLFERFLNP+R+SMPD D
Sbjct: 355  VADFINWAKDHGIPVGPGRGSAAGSLVAYSIRITDIDPIPYNLLFERFLNPERISMPDID 414

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFCQDRR+EVI+YV  KYG ++V QIITFG++ A+  LRDVGRAL M Y  VD++ KL+
Sbjct: 415  VDFCQDRREEVIQYVTEKYGRDKVCQIITFGTMAARGVLRDVGRALDMAYGDVDKIAKLV 474

Query: 480  PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P      ++L +A+  + +  E   AD  V  LL+++  LEGL RHASTHAAG+V+    
Sbjct: 475  PE--VLGITLDKALQQEPKLNELAAADRRVKELLDVALCLEGLARHASTHAAGVVVAPDV 532

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD 597
            L +  P+Y+D ++    TQ++MK++EK GL+KFDFLGLK LT++  ++  + A +    D
Sbjct: 533  LEEFCPVYKDQKNGSITTQYSMKYVEKIGLVKFDFLGLKNLTVIHNAVKIIRAGKDPAFD 592

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++L+  DD E+Y LL +  T G+FQLESSGM+  L  ++P C EDIIA+ +LYRPGP+ +
Sbjct: 593  ITLLRDDDEESYRLLQSGNTTGVFQLESSGMQGLLVKLKPSCFEDIIAVCALYRPGPLGS 652

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  + +RK+GK+K+V   P ++P+LK+T GVI+YQEQVMQI++ L+GYSL +AD+LRR
Sbjct: 653  GMVDDFIDRKHGKKKVVYDLPQLEPILKDTYGVIVYQEQVMQISRTLAGYSLGQADLLRR 712

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  E M K+K  F++GA + GI    A +IF+L+AKFA+YGFNKSH+AAYA+++YQ
Sbjct: 713  AMGKKDPEVMAKEKIPFLAGAKEQGIDPKKAESIFDLMAKFAEYGFNKSHSAAYALVAYQ 772

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYPVEF+AA +T +M N +K+ K   D R   I+++PP +N     F+V    I
Sbjct: 773  TAYLKAHYPVEFMAALLTEDMGNTDKVIKNISDCRDMGIEVLPPDINASDHSFRVLGKSI 832

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             + L A+K VG +    I+E+     F  + DFC RVD +++N+RV+ESLV  GA D  G
Sbjct: 833  RFGLGAVKNVGESAIEAIIESRKSGSFADIYDFCERVDLRRVNKRVVESLVKCGAFDSTG 892

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE---KGTFSDKITLEKFSVENSSVRF 952
              R  L+ +L++     Q +++ R +   ++F      +G  + K +L      +  +  
Sbjct: 893  ARRAPLMAALEDAMVLGQKIQQERDSAQVSLFGVAEIVRGNGNGKGSLPDVPEWDDKLLL 952

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              E+  LGFY +GHPLD Y   +++       +         ++L  +VV+K++  T+KG
Sbjct: 953  NQEKEALGFYITGHPLDRYSSQIKRFATVHTSDFGEISDRAEVKLCGIVVTKKEFITKKG 1012

Query: 1013 SRIGWVTFSE 1022
             R+ +VT  +
Sbjct: 1013 ERMAFVTLED 1022


>gi|300902003|ref|ZP_07120030.1| DNA polymerase III subunit alpha [Escherichia coli MS 84-1]
 gi|301305320|ref|ZP_07211416.1| DNA polymerase III subunit alpha [Escherichia coli MS 124-1]
 gi|300405889|gb|EFJ89427.1| DNA polymerase III subunit alpha [Escherichia coli MS 84-1]
 gi|300839425|gb|EFK67185.1| DNA polymerase III subunit alpha [Escherichia coli MS 124-1]
 gi|315254986|gb|EFU34954.1| DNA polymerase III subunit alpha [Escherichia coli MS 85-1]
          Length = 1144

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1040 (41%), Positives = 624/1040 (60%), Gaps = 54/1040 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59   DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFVDIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953
             SL +  K A    K       ++F    G  ++    E   +E S          V  +
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935

Query: 954  NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++G
Sbjct: 936  GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 995

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +RIG  T  + +   E   F
Sbjct: 996  NRIGICTLDDRSGRLEVMLF 1015


>gi|120553848|ref|YP_958199.1| DNA polymerase III subunit alpha [Marinobacter aquaeolei VT8]
 gi|120323697|gb|ABM18012.1| DNA polymerase III, alpha subunit [Marinobacter aquaeolei VT8]
          Length = 1162

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1052 (40%), Positives = 638/1052 (60%), Gaps = 53/1052 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL+VHS YS+++G + +  ++ ++A    PA+ +T+ +N+ S + F + A  AG++P
Sbjct: 6    TFVHLRVHSEYSMVDGLVRVKPLIGRVAELGMPAVGLTEQSNMCSLVRFYKAAMGAGVKP 65

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  +       L+  ++ + PF     + LL    +GY  L E++S  Y   Q     
Sbjct: 66   IIGADI------WLENPDEPENPF----RLTLLARDNDGYLNLTEVISLGYTEGQRYGKP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             +  SWL E   +GLI+L+G   G + +A      ++A +R   ++ L+ D  Y+ LQR 
Sbjct: 116  IVQKSWL-ESRAKGLIVLSGAKMGDVGKALLAGKPELARERADYWRNLYPDSYYLELQRT 174

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             R  D       V+LA    LP+VATN+  FL  +D+EAH+  + +  S  +    R R 
Sbjct: 175  GRAGDEDCLHMSVELAAELGLPVVATNDVHFLEADDFEAHEARVCIGESRTLDDPRRDRR 234

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YL++  EM+ +FSD+PEA+ENTVEIARRCS  +++    LP +     D +  +E
Sbjct: 235  FSDQQYLRSAEEMIELFSDIPEAVENTVEIARRCSVKVRMGEYFLPNY--PIPDGMTMDE 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKG-----YHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                R+ +  GLE RLA+  ++K         ++Y +RL FEL++I +M F GYFLIV D
Sbjct: 293  Y--FRHVSEEGLEARLAK-TLSKDDPEYDQKREEYYKRLKFELDIIIQMGFPGYFLIVMD 349

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 350  FIKWAKNNGVPVGPGRGSGAGSLVAYALLITDLDPLEYDLLFERFLNPERVSMPDFDVDF 409

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI Y   KYG E V+QIITFG++ AKA +RDV R     Y   D+L KLIP +
Sbjct: 410  CMEGRDRVIDYTAQKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKLIPFE 469

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                ++ +AI  + + +E    D     + E++ KLEG+ R+A  HA G+VI    ++  
Sbjct: 470  VGMTLN-KAIEQEPQLKEFLEQDEEAQEIWEMALKLEGVCRNAGKHAGGVVIAPTKITDF 528

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGV-KVD 597
             P+Y D      VTQF+   +E AGL+KFDFLGL+TLT+++ +L+ +     QRG  ++D
Sbjct: 529  SPLYCDDEGGSLVTQFDKGDVEDAGLVKFDFLGLRTLTIIKWALNMINPRRQQRGEGELD 588

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +S IP DD  ++ +L    T  +FQLES GM+  +  +QPD +ED+IALV+L+RPGP+ +
Sbjct: 589  ISAIPLDDKPSFDMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPGPLQS 648

Query: 658  IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + +RK+G++ +   HP      + P+L+ T GVI+YQEQVMQIAQ+++GY+L  A
Sbjct: 649  GMVDDFIDRKHGRQPLSYPHPDYQYQGLKPVLEPTYGVILYQEQVMQIAQVMAGYTLGGA 708

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQK  F+ G   NGI KT+A NIF+L+ KFA YGFNKSH+AAYA
Sbjct: 709  DMLRRAMGKKKPEEMAKQKAIFLDGCENNGIDKTLAENIFDLVEKFAGYGFNKSHSAAYA 768

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+K HYP EF+AA +T +M N +K+    ++ R   + ++ P V+     F V
Sbjct: 769  LVSYQTLWLKAHYPAEFMAAVLTADMQNTDKVVTLVEECRNMKLDLLVPDVSRSAYTFTV 828

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  +I Y L AIKG+G      I+EA+   PF  + DFC RVD KK+N+R +E+L+ +G
Sbjct: 829  NDQGQIVYGLGAIKGLGEGPIESIVEAAKAGPFQDIFDFCRRVDLKKVNKRAMEALIRSG 888

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-------EKGTFSDKITLEK 942
            A+D  G  R +L+ S+D   + A    +N      ++F         ++ T++D   + +
Sbjct: 889  AMDKLGADRAKLMASIDKAIQQADQQSRNDAAGMVDMFGEMLEGGGDDEDTYADVAHVRE 948

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAM 1000
            +  +    R + E+  LG Y +GHP D Y+  +R+        S+A ++ N    R+A +
Sbjct: 949  WPEKE---RLKGEKDTLGLYLTGHPFDEYEREVRRF----VRCSIADLKPNKSPQRVAGL 1001

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            VV+++  KT+ GS + ++T  + +   EA  F
Sbjct: 1002 VVAQRTMKTKTGSTMCFITLDDRSARIEATLF 1033


>gi|114562463|ref|YP_749976.1| DNA polymerase III subunit alpha [Shewanella frigidimarina NCIMB 400]
 gi|114333756|gb|ABI71138.1| DNA polymerase III, alpha subunit [Shewanella frigidimarina NCIMB
            400]
          Length = 1158

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1045 (40%), Positives = 610/1045 (58%), Gaps = 40/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+ +G   +  I+         AIA+TD NN    ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMSDGVAKVKPIIAAAENQGMAAIALTDQNNFCGLVKFYGACNGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPF--PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            PIIG    +            +TP       ++ ++    EGYQ L +L+S  YL     
Sbjct: 64   PIIGADFWV------------QTPGFEKEFCALTIIAMNNEGYQNLTQLISEAYLRGHVD 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V I   WL +  + GLI+++G   G + +A    +    E  +  +++ F DR Y+ L
Sbjct: 112  NRVVIDQDWLVKYNS-GLIIISGAKDGDVGKALLKGNQNQVESLIAFYQQHFEDRYYLEL 170

Query: 187  QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R  R ++       V+LA    LP+VATN  +FL ++D+EAH++ +A+     +    R
Sbjct: 171  IRTGRAHEERYLHMAVELASIKGLPVVATNQVVFLKQDDFEAHEIRVAIHDGFTLVDPRR 230

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+   D  YL+   EM+++F+D+P A++N+VEIA+RC+  ++++   LP F   +     
Sbjct: 231  PKTYSDQQYLRTEDEMIALFADIPSAIQNSVEIAKRCNVTIRLNEYFLPNFPTGDL---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L N +V GLE RL         +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -SIEDFLVNVSVKGLEERLEFLFPNPQVRAEKRGEYDERLEIELKVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  V+RL KLIP 
Sbjct: 406  FCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVERLTKLIPA 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   ++ +A   +    EA   D  V  L+++ ++LEG+ R+A  HA G+VI    ++ 
Sbjct: 466  EPGMTLA-KAFEVEPALPEAYDGDEDVKELIDMCRRLEGVTRNAGKHAGGVVIAPTRITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R +K     V
Sbjct: 525  FAPLYCDAEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPRLIKEGKDPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP  D   + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  SIEAIPLADPACFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N   RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIERKHGREEVSYPDAEYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRGTFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     F 
Sbjct: 765  ALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFT 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V D+  I Y + AIKGVG      I+EA  + PF  L DFC+R+D KKLN+RV+E L+ A
Sbjct: 825  VDDDLNIVYGIGAIKGVGEGPVDSILEARKNGPFTDLFDFCARIDLKKLNKRVIEKLILA 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            GALD  G  R  ++ +L      A    K       ++F        D K      +   
Sbjct: 885  GALDTLGPHRASMMATLPQAISAAAQHAKAEATGQNDMFGLLNSEPEDSKQNFVHCTPWP 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +  E E+  LG Y +GHP++ Y   L++      ++   T RG  ++ A +VV+ +  
Sbjct: 945  DKIWLEGERETLGLYLTGHPINQYLKELKQYTNGRLKDIHPTERGKTVKAAGLVVATRVM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GS++G VT  + +   E   F
Sbjct: 1005 ITKRGSKMGLVTLDDKSARLEVMLF 1029


>gi|323170976|gb|EFZ56625.1| DNA polymerase III subunit alpha [Escherichia coli LT-68]
          Length = 1140

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1030 (41%), Positives = 621/1030 (60%), Gaps = 54/1030 (5%)

Query: 32   ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91
            ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q +L        
Sbjct: 7    LVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQCDLLGDE---- 60

Query: 92   PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151
                +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  EGLI+L+GG 
Sbjct: 61   ----LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-NEGLILLSGGR 115

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELP 210
             G + R+    +S + ++ +  +++ F DR ++ L R  R  +       V+LA    LP
Sbjct: 116  MGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLP 175

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPE 269
            +VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  EM  +F+D+PE
Sbjct: 176  VVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPE 235

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QG 326
            AL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GLE RLA     
Sbjct: 236  ALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGLEERLAFLFPD 290

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
               +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ 
Sbjct: 291  EEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLV 350

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QI
Sbjct: 351  AYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQI 410

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
            ITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + +  E   AD 
Sbjct: 411  ITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEPQLPEIYEADE 469

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
             V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E A
Sbjct: 470  EVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYA 529

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIF 621
            GL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +L    T  +F
Sbjct: 530  GLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVF 589

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI----- 674
            QLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E+I        
Sbjct: 590  QLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQ 649

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EEM KQ+  F  
Sbjct: 650  HESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAE 709

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT 
Sbjct: 710  GAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTA 769

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHI 853
            +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIKGVG      I
Sbjct: 770  DMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 829

Query: 854  MEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            +EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A
Sbjct: 830  IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 889

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFENEQRVLGFYF 963
                K       ++F    G  ++    E   +E S          V  + E+  LG Y 
Sbjct: 890  DQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLDGERETLGLYL 941

Query: 964  SGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++G+RIG  T  +
Sbjct: 942  TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1001

Query: 1023 PAKEYEANFF 1032
             +   E   F
Sbjct: 1002 RSGRLEVMLF 1011


>gi|300993595|ref|ZP_07180451.1| DNA polymerase III subunit alpha [Escherichia coli MS 45-1]
 gi|300406518|gb|EFJ90056.1| DNA polymerase III subunit alpha [Escherichia coli MS 45-1]
 gi|315294588|gb|EFU53935.1| DNA polymerase III subunit alpha [Escherichia coli MS 153-1]
          Length = 1144

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1040 (41%), Positives = 624/1040 (60%), Gaps = 54/1040 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59   DLLGDE--------LTHLTVLAANNIGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953
             SL +  K A    K       ++F    G  ++    E   +E S          V  +
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935

Query: 954  NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             E+  LG Y +GHP++ Y K I R +G    ++   T RG     A +VV+ +   T++G
Sbjct: 936  GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRG 995

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +RIG  T  + +   E   F
Sbjct: 996  NRIGICTLDDRSGRLEVMLF 1015


>gi|328953644|ref|YP_004370978.1| DNA polymerase III, alpha subunit [Desulfobacca acetoxidans DSM
            11109]
 gi|328453968|gb|AEB09797.1| DNA polymerase III, alpha subunit [Desulfobacca acetoxidans DSM
            11109]
          Length = 1150

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1039 (40%), Positives = 631/1039 (60%), Gaps = 30/1039 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL VH++YSLL+GA+ LN+++D   + + PA+AITD  N+F  +EF  KA  AG+
Sbjct: 3    TPGFVHLHVHTAYSLLDGAIRLNDLIDTALSMEMPAVAITDHGNMFGVVEFYTKAEKAGL 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC+L +     L+ + +    +     +VLL     GYQ L++LVS+  L +    
Sbjct: 63   KPIIGCELYVAPGSRLEKSGKKGDNY----HLVLLAENLTGYQNLLKLVSKANL-EGFYY 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+    L +   EGLI L+    G +      +  + AE     + ++F  R Y+ +Q
Sbjct: 118  KPRVDRELLAD-HAEGLIALSACLHGVVAAHVVADDLKTAEIAAREYGEIFPGRFYLEVQ 176

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   ++ +  + ++++A    LP+VATN+  +L  ED  AHDVL+ +     ++   R 
Sbjct: 177  ANDLTEQQKVNAALLEMAPRLGLPVVATNDCHYLRPEDARAHDVLLCIQTGKTINTTKRM 236

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKECDD 302
            R + D  + K+  +M + F D P+ LE ++EIA RC   L   + H P+ P        +
Sbjct: 237  RFSTDQLFFKSPVQMAAAFPDRPDLLEASLEIANRCQLELPLGEFHFPVFPL-------E 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLI 359
              +  E +L+ +A  GLE RL Q  ++  +     Q YR R++ EL ++ +M F+GYFL+
Sbjct: 290  NGQTMEAQLQQEARRGLEHRLHQWQLSGAWPMEKIQHYRARMEEELALLCQMGFAGYFLV 349

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI++A+K +IPVGPGRGS AGS+ A AL ITD+DP+ + L FERFLNP+R SMPD D
Sbjct: 350  VADFIRYARKRHIPVGPGRGSAAGSLVACALEITDLDPIAYGLFFERFLNPERKSMPDID 409

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC +RR E+I YV  KYG E V QIITFGS++ +  +RDVGRAL +PY + D++ KL+
Sbjct: 410  VDFCFERRGEIIDYVARKYGKEHVGQIITFGSMKTRQVIRDVGRALDLPYPEADKIAKLV 469

Query: 480  PNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P+     ++L+ A+  + R REAR AD ++  +L I+  LEGL RHASTHAAG+VI D+P
Sbjct: 470  PD--VLKINLRTALEKEPRLREARDADENIREVLTIAAALEGLPRHASTHAAGVVIADKP 527

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597
            L   +P+Y+  + ++ +TQF MK +EK GLIKFDFLGL+TLT+L+ +   +  Q+    D
Sbjct: 528  LWCYLPLYKGNKDEI-ITQFEMKGVEKVGLIKFDFLGLRTLTVLETAAQIVRRQKDKNFD 586

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +P +D  T+ LL +  T G+FQLESSGMR+ L  ++P C ED+IALV+LYRPGP+++
Sbjct: 587  YRQLPLEDAATFELLRSGNTAGVFQLESSGMREKLVQLRPTCFEDLIALVALYRPGPLES 646

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  +  RK+G+  +    P ++P+LKET G+I+YQEQVMQIA ++SGYS+ EAD+LRR
Sbjct: 647  GMVDDFIKRKHGELNVTYELPELEPILKETYGIILYQEQVMQIAGIISGYSMGEADILRR 706

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK    M  QKERF SGA   G     A  +F L+ KFA YGFNKSH+AAYA I+YQ
Sbjct: 707  AMGKKEPAVMAAQKERFCSGAVSRGFPLAKAEKLFHLIEKFAGYGFNKSHSAAYAYITYQ 766

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYP+EFLAA  T E+++   + K  Q+AR+  I ++PPS+N    DF V  ++I
Sbjct: 767  TAYLKAHYPLEFLAALFTSEINSPTTLTKHIQEAREDGIVLLPPSLNASERDFTVEGSQI 826

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             + LA +K VG    + I+EA    PF SL +F  R +  K+N++VLESL+ AGALD  G
Sbjct: 827  RFGLAGVKNVGDNAIKAILEARKKGPFISLGNFLERANQTKVNKKVLESLIQAGALDFLG 886

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFE 953
             +R +L   ++   + AQ   K +  +  ++F    E         L      +   +  
Sbjct: 887  INRARLFGGVEAALERAQVALKLQAARQMDMFGGLGEADLGEGDDWLPPVPEWDEQEKLA 946

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  LG Y SGHPL  Y+  L+ +     ++         + L  ++V+ ++  T+KG 
Sbjct: 947  REKEALGIYLSGHPLAKYRQQLQALTDLTIDDLAEKPENGPVLLGGLIVAVKETMTKKGE 1006

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            R+ + T  +     E   F
Sbjct: 1007 RMAFATLEDQVGSVEVVVF 1025


>gi|220934350|ref|YP_002513249.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995660|gb|ACL72262.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1162

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1054 (40%), Positives = 636/1054 (60%), Gaps = 48/1054 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL +H+ +SL++G + +  ++  +     PA+A+TD  NLF  ++F + A  AGI
Sbjct: 2    TTSFVHLHLHTEFSLVDGLVRVEPLVQAVREAGMPAVAVTDQGNLFGMVKFYKAALKAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+G    +           G+ P      +VLL    +GY+ L  L+SR Y   +G+Q
Sbjct: 62   KPIVGVDTWV------SAPQAGEAP----SRLVLLAQDEDGYRNLTRLISRSY--QEGQQ 109

Query: 128  SVRICL---SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            S    +    W  +  + GLI L+GG  G I RA   +    AE+    ++ LF  R Y+
Sbjct: 110  SGDAPVLDRGWF-DGASRGLIALSGGREGEIGRALMGSQPSAAEELCEFWEGLFPGRFYL 168

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             + R  R  +       V LA +  LP+VATN+  FL+  D++AH+  + +    V+   
Sbjct: 169  EIGRTGREGEEDHLHAAVDLAQSRSLPVVATNDVRFLAASDFDAHEARVCIHDGRVLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  TP  YL+   EM ++F+D+PEALEN+VEIARRC+  L +   +LP +       
Sbjct: 229  RRPRDYTPQQYLRTAEEMAALFADIPEALENSVEIARRCNVSLTLGKSVLPEYPVPAG-- 286

Query: 303  IQKEEENELRNKAVAGLEVRLAQ--GAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFL 358
                 ++  R  +  GL+ RLA     +     A++  YR+RL+ EL+VI +M F GYFL
Sbjct: 287  --MTTDDYFRKASREGLDARLAVILEGVTDNREAKERAYRERLEIELDVICQMGFPGYFL 344

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFIQWAK N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDF
Sbjct: 345  IVADFIQWAKDNAIPVGPGRGSGAGSLVAYALKITDLDPLLYDLLFERFLNPERVSMPDF 404

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC ++RD VI YV  +YG E+V+QIIT G++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 405  DIDFCMEQRDRVIDYVAQRYGREKVSQIITHGTMAAKAVVRDVGRVLGHPYGFVDRIAKL 464

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP +    +  +A+  +   R     D  V  L+++++KLEG+ R+A  HA G+VI    
Sbjct: 465  IPFEIGMTLD-KALEQEEELRRLYEEDEEVSGLIDLARKLEGVARNAGKHAGGVVIAPTE 523

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRG 593
            L+   P+Y +      VT F+   +E  GL+KFDFLGL+TLT++  ++  +     A+  
Sbjct: 524  LTDFSPLYCEPGGQSVVTHFDKDDVEAVGLVKFDFLGLRTLTIIDWAVRTIDQQRKAEGQ 583

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              +D++ IP DD ET+ LL  + T  +FQLES GM++ ++ +QPD  EDI+ALV+LYRPG
Sbjct: 584  APLDVNRIPLDDPETFGLLKRQETTAVFQLESRGMKELIKRLQPDVFEDIVALVALYRPG 643

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+ + +V  + NRK+G+ K+   HP ++P+LK T GVI+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 644  PLQSGMVDDFINRKHGRAKVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLAGYTLGGAD 703

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+E F++GA+  G+ +  A  IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 704  MLRRAMGKKKPEEMAKQREIFLAGATGRGVQEATASYIFDLMEKFAGYGFNKSHSAAYAL 763

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQTAW+K HYP  F++A ++ +MD+ +K+    ++ R   + ++PP +N     F V 
Sbjct: 764  LSYQTAWLKQHYPAAFMSAVLSADMDHTDKVVNLIEECRAMELHVVPPDINRSQHRFGVA 823

Query: 832  DNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D R + Y L AIKGVG +  + +++A  A  PF SL+D C R DS+K+NRR LE+L+ AG
Sbjct: 824  DARTVIYGLGAIKGVGESAIQALIQAREAGGPFQSLDDLCVRADSQKINRRTLEALIRAG 883

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            ALD  G +R  L+ +L      A+   +N +   E++F       +  +  E+    +  
Sbjct: 884  ALDSIGPNRATLMANLPKALSRAEQHLRNESLGQEDLFGGPVTPGASDVDDEQLPEWDED 943

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-----------RGNNIRLA 998
            +R   E+  LG Y +GHP+D ++  L+ +  K   + VA +           +     + 
Sbjct: 944  LRLSAEKETLGLYLTGHPIDRFQAELKAIHSKRIADLVAEVGDQTPGEGRRRKEQQATVG 1003

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +V++ + K T+ G RIG+VT  + +   E   F
Sbjct: 1004 GLVINIRTKPTQTG-RIGFVTLDDRSGRIEVGLF 1036


>gi|323157979|gb|EFZ44081.1| DNA polymerase III subunit alpha [Escherichia coli EPECa14]
          Length = 1144

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1040 (41%), Positives = 624/1040 (60%), Gaps = 54/1040 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59   DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGLI+L+GG  G + R+    +  + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNRALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953
             SL +  K A    K       ++F    G  ++    E   +E S          V  +
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935

Query: 954  NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++G
Sbjct: 936  GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 995

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +RIG  T  + +   E   F
Sbjct: 996  NRIGICTLDDRSGRLEVMLF 1015


>gi|322420562|ref|YP_004199785.1| DNA polymerase III subunit alpha [Geobacter sp. M18]
 gi|320126949|gb|ADW14509.1| DNA polymerase III, alpha subunit [Geobacter sp. M18]
          Length = 1156

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/1038 (39%), Positives = 631/1038 (60%), Gaps = 26/1038 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +HS YSLL+GA+ + ++L K+     PA+AITD  N+F  LEF  KA   GI+P
Sbjct: 5    NFVHLHLHSQYSLLDGAIRIGDLLKKVKDCHMPAVAITDHGNMFGTLEFFLKAKEKGIKP 64

Query: 70   IIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I+G ++ I      LK       P  T   ++LL     G++ L  LVS  Y  D   + 
Sbjct: 65   ILGSEVYIAPHSRTLKQAPTAADPV-TSYHLILLCENMTGFKNLSYLVSAGYK-DGFYRR 122

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT--FKKLFGDRLYVNL 186
             RI    L +   EGLI+L+    G +  A+    +++ E R     + + F    Y+ L
Sbjct: 123  PRIDKELLLK-HKEGLIVLSACLQGEV--AYLAGRNKMDEARDAASWYAENFPGSYYIEL 179

Query: 187  QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q ++  ++     +++++A    LPLVATN+  +L++ED  AH++L+ +     +S   R
Sbjct: 180  QENKLPEQDIANKRLLEIAREMNLPLVATNDCHYLNQEDARAHEILLCIQTGKTMSDPTR 239

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               + D  Y+K   EM   F   P+ALENTV+IA RC+          P +     + + 
Sbjct: 240  MAFSVDEFYVKTPEEMAKAFHYAPDALENTVKIAERCNLEFDFKTYYFPAYEAPPGETLD 299

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            ++ E E    A  GL +RL +  I         + Y  RL  EL+ I +M F GYFLIVA
Sbjct: 300  QQLERE----ATEGLVLRLEKIRIKYNLTEDQEKGYWDRLRIELDCIRQMGFPGYFLIVA 355

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK + IPVGPGRGS AGS+ A+ + ITDIDP+ ++LLFERFLNP+R+SMPD D+D
Sbjct: 356  DFINWAKDHGIPVGPGRGSAAGSLVAFCIRITDIDPMPYNLLFERFLNPERISMPDIDVD 415

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR+EVI+Y+  KYG E+V QIITFG++ A+  +RDVGRAL + +  VD++ KL+P 
Sbjct: 416  FCQDRREEVIQYMVEKYGREKVCQIITFGTMAARGVIRDVGRALDLTFGDVDKIAKLVPE 475

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 ++L+ A+  + + +E   ADP V  ++ ++ +LEGL RHASTHAAG+V+  R + 
Sbjct: 476  --VLGITLEKALEQEPKLKELMDADPKVKEVMTVALRLEGLARHASTHAAGLVVAPRQME 533

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599
            +  P+Y+D ++    TQ++MK++EK GL+KFDFLGLK LT++  +   + A +    D++
Sbjct: 534  EFCPVYKDQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIDNACKHIRAGKDPNFDIT 593

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            L+  DD E+Y LL    T G+FQLESSGM++ L  ++P C EDIIA+ +LYRPGP+ + +
Sbjct: 594  LLRDDDEESYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLGSGM 653

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            V  +  RK+G+++ V   P ++P+LK+T GVI+YQEQVMQI++ L+GYSL  AD+LRRAM
Sbjct: 654  VDDFIERKHGRKQTVYDLPQLEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGADLLRRAM 713

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  E+M K++++F+ G+ K G+       IF+L+AKFA+YGFNKSH+AAYA+++YQTA
Sbjct: 714  GKKDAEQMAKERDKFLIGSEKLGLDSKKCAAIFDLMAKFAEYGFNKSHSAAYALVAYQTA 773

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYPVEF+AA +T +M N +K+ K   D R+  I+++PP +N     F+V +  + +
Sbjct: 774  FLKAHYPVEFMAALLTEDMANTDKVVKSIGDCREMGIEVLPPDINESLRSFRVLEKAMRF 833

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L A+K VG      I+EA  D+PF  + DFC RVD +++N+RV+E+L+  GA DC G  
Sbjct: 834  GLGAVKNVGEGAIEAIIEARGDEPFKDIFDFCERVDQRRVNKRVIEALIKCGAFDCTGAK 893

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---EKGTFSDKITLEKFSVENSSVRFEN 954
            R QL+ +L++     Q V++ R +   ++F     ++G+      L      +   R   
Sbjct: 894  RAQLMAALEDAAVNGQRVQQERESAQASLFGAAEIQRGSNGSGNRLPDIPEWDEKYRLGC 953

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  +GF+ +GHPLD Y   +R+         +     + I++  +  S ++  T+KG R
Sbjct: 954  EKEAIGFFITGHPLDRYVADMRRFSSVDCTSILEAKEKSEIKICGVPTSLKEIMTKKGDR 1013

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            +G+V   +     E   F
Sbjct: 1014 MGFVALEDLVGSVEVVVF 1031


>gi|113460344|ref|YP_718405.1| DNA polymerase III subunit alpha [Haemophilus somnus 129PT]
 gi|112822387|gb|ABI24476.1| DNA polymerase III, alpha subunit [Haemophilus somnus 129PT]
          Length = 1158

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1046 (41%), Positives = 623/1046 (59%), Gaps = 42/1046 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S++ G   +  ++      +  A+A+TD  N    + F  +A ++G++
Sbjct: 4    PRFVHLRVHSDFSMINGITKVKPLIKACVQHEMVAMALTDFTNFCGLVRFYGEAQSSGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D+ ++ +L     G   F     + LL    EGY  +  L+S+ Y  ++G  +
Sbjct: 64   PIIGA--DVLVKSDL----LGDELF----ELTLLAKNNEGYHNITLLLSKAY--ERGYYN 111

Query: 129  V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            +  I  SWL E   EG+I+L+GG +G + +    N+S   E  +  +++ F D  Y++L 
Sbjct: 112  LPYIDQSWLAE-HHEGIIILSGGRNGDVGKKLLKNNSADVETAVAFYQEYFPDHFYLSLS 170

Query: 188  R--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      DRY +S ++ LA   +LPLVATN+  FLS ED+EAH++ +A+     +    R
Sbjct: 171  RTGRSDEDRYIQSALI-LAQQKQLPLVATNDVCFLSPEDFEAHEIRVAIHDGYTLDDPKR 229

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P++ +   Y ++  EM  +F+D+P ALENTV IA+RC+  +++    LP+F   +     
Sbjct: 230  PKLYSSQQYFRSEQEMCELFADIPTALENTVLIAQRCNVTIRLGTYFLPKFPTGDL---- 285

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +    ++Y  RL  EL+VI +M F GYFLIV 
Sbjct: 286  -SPEDFLIQKSKEGLEERLQTLFPDPQVRSEKRKEYDDRLQTELDVINKMGFPGYFLIVM 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNPDR+SMPDFD+D
Sbjct: 345  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPDRVSMPDFDVD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 405  FCMDKRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLIPA 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   ++ +A   + R  E    D  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 465  DPGMTLT-KAFEVEPRLSEIYNNDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLITD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R VK     V
Sbjct: 524  FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLVKEGKSAV 583

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+S IP +D ++++LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP++
Sbjct: 584  DISTIPLNDPDSFNLLKKAETTAVFQLESRGMKDLIKKLQPDCFEDIIALVALFRPGPLE 643

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G E +        H  + P+L+ T GVI+YQEQVMQIAQ+L+GYSL  
Sbjct: 644  SGMVQNFIDRKHGVEPVSYPDVKYQHESLKPILEPTYGVIVYQEQVMQIAQVLAGYSLGG 703

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM  Q++ F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 704  ADLLRRAMGKKKPEEMAAQRDIFEKGAIAKGIDGDLAMKIFDLVEKFAGYGFNKSHSAAY 763

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT EMDN +KI  F  +  +  + I+PP +NT    F 
Sbjct: 764  ALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVSFYDECLRMGLTIVPPDINTGKHHFS 823

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+ A      F  L D C+RVD KK+NRR  E+L+ 
Sbjct: 824  VNDNGEIVYGIGAIKGVGEVPINAIVSAREQGGIFKDLFDLCARVDLKKVNRRTFENLIK 883

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            +GA D  G  R  L Q+L++  K +    K+      ++F     +  D  T    +   
Sbjct: 884  SGAFDKLGPHRAALAQNLEDALKASDQHAKDEAIGQVDMFGVLTSSHEDVETAYAHTPRW 943

Query: 948  SSVR-FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            S  +  + E+  LG Y S HP+  Y   L         E     RG    +  ++V+ + 
Sbjct: 944  SEKQILDGERETLGLYLSSHPITRYLKELSHYSSTRLNELSPNTRGKISTVCGLIVALRF 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+KG+R+G  T  + +   +   F
Sbjct: 1004 AVTKKGNRLGIATLDDRSGLLDITLF 1029


>gi|296106547|ref|YP_003618247.1| DNA polymerase III subunit alpha [Legionella pneumophila 2300/99
            Alcoy]
 gi|295648448|gb|ADG24295.1| DNA polymerase III subunit alpha [Legionella pneumophila 2300/99
            Alcoy]
          Length = 1148

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1047 (41%), Positives = 642/1047 (61%), Gaps = 53/1047 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VH+ +SL++G + +  ++  + A     +A+TD  NLF+A++  + A  AGI+PI
Sbjct: 5    FVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKPI 64

Query: 71   IGCQL---DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IG  L   D++  DN             + S+VLL     GY+ L  LVS+ Y   Q   
Sbjct: 65   IGSDLPCHDLETPDN-------------IFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+ L W+ E  ++GLI L+GG  G I +A   N   +A KR L +  LF +R Y+ +Q
Sbjct: 112  QPRVQLQWIPEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQ 170

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            R  R  + +   ++V LA   +LPLVATN+  F++E+D++AH+  + +     ++   R 
Sbjct: 171  RTGRADELHYNEKLVALADELQLPLVATNDVRFINEDDFDAHEARVCIHEGYTLADPRRV 230

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + +   YL++  EM  +FSDLP AL+NTVEI++RC+  L +    LP F   +   +  
Sbjct: 231  QQYSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLDLGHNYLPNFPIPDGTTV-- 288

Query: 306  EEENELRNKAVAGLEVRLAQ-------GAI--AKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E  L + +  GLE RL Q       G +  A+G    +Y +RL  EL+VI  M F+GY
Sbjct: 289  --EAYLSHLSEVGLEERLKQLFRDKSEGELLAARG----EYDKRLKIELDVINNMGFAGY 342

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMP
Sbjct: 343  FLIVADFIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMP 402

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC + RD VI YV  KYG + V+QIITFG++ AKA +RDVGR L  PY  VD+L 
Sbjct: 403  DFDIDFCMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLA 462

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP +    +S +A+  +   R     +  V  L +++ KLEG+ R+A  HA G+VI  
Sbjct: 463  KLIPFELGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAP 521

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592
              L+    +Y +  S   V+QF+   +E  GL+KFDFLGL+TLT++  +L  + ++    
Sbjct: 522  SQLTDFTAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENA 581

Query: 593  GVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            G+  +D+S IP  D  T+ LL    T  +FQLES GM++ +  +QPDC EDIIALV+L+R
Sbjct: 582  GLSPIDISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFR 641

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+ + +V  + +RK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L  
Sbjct: 642  PGPLQSGMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGA 701

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+E F  GA   G+ + +A +IF+L+ KFA YGFNKSH+AAY
Sbjct: 702  ADLLRRAMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAY 761

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+++YQTAW+K HYP  F+AA M+ +MDN +K+  F  +     +Q++PPS+N     F 
Sbjct: 762  ALVAYQTAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFT 821

Query: 830  VGDNR-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D + I Y L AIKGVG +    I+ E + + PF  L  FC R+D +K+NRRV+E+L+ 
Sbjct: 822  VSDEKTIIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIK 881

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            +GA D +   R  L  SL+   K A+   +N+++   ++F+  +    ++  +E  S   
Sbjct: 882  SGAFDVWKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDKADEQNYVESKSWSE 941

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVSKQ 1005
            +  R E E+ VLGFY +GHP D Y+   R++G  I    +   ++    I + A VV+ +
Sbjct: 942  AQ-RLEGEREVLGFYLTGHPADQYR---RELGDFIVPVSQLNPSLHKKAI-ICAQVVAIR 996

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T++G ++  +   +     +A  F
Sbjct: 997  KIITKRGKKLVIIGMDDATARIDAVVF 1023


>gi|326621935|gb|EGE28280.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Dublin str. 3246]
          Length = 1144

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1040 (41%), Positives = 621/1040 (59%), Gaps = 54/1040 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K A+   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVH--- 57

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 58   NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R  R  +       
Sbjct: 110  EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEALENTVEIA+RC+  +++    LP+F   +        E+ L  KA  GL
Sbjct: 230  MCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDYLVKKAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   ++ +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLA-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953
             SL +  K A    K       ++F    G  ++    E   +E S          V  +
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935

Query: 954  NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             E+  LG Y +GHP++ Y K I R +G    ++   T RG     A +V++ +   T++G
Sbjct: 936  GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRG 995

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +RIG  T  + +   E   F
Sbjct: 996  NRIGICTLDDRSGRLEVMLF 1015


>gi|323700171|ref|ZP_08112083.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. ND132]
 gi|323460103|gb|EGB15968.1| DNA polymerase III, alpha subunit [Desulfovibrio desulfuricans ND132]
          Length = 1184

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1056 (40%), Positives = 629/1056 (59%), Gaps = 48/1056 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA+ +N++L +      PA+AITD  ++F A+ F   A   GI+PI
Sbjct: 4    FVHLHVHTEYSLLDGAIRINDLLTRAKDLGMPAVAITDHGSMFGAVVFYMAAKELGIKPI 63

Query: 71   IGCQL-----DIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            IGC++     D+D ++ +L+  + G         ++LL     GY+ LI+LVS  YL D 
Sbjct: 64   IGCEVYVAEGDVDDEEAHLRKEHGGGY------HLILLAKNQRGYKNLIKLVSTGYL-DG 116

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 R+    L++  +EGLI L+   +G I R       +       T++ +F    Y+
Sbjct: 117  FYYKPRVSKHLLKKY-SEGLIALSACLAGEIPRKLMNEGLEAGADMARTYESIFPGNFYL 175

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ +    + R +++ V+ A    LPLVATN+  +L+ ED+EAHD L+ +   T V  +
Sbjct: 176  ELQDNGIGKQTRLNELLVKCAEKTGLPLVATNDCHYLTAEDFEAHDTLLCIQTQTTVDAE 235

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R R+ T + Y K   EM   F+ +PEA+ NT  IA +C+  +++     P +   E   
Sbjct: 236  KRFRMETKELYFKTPEEMEKAFAHVPEAILNTQRIAEQCNLEIELGNYYFPEYKLPEGVS 295

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            + +E E   R     GL+ RL    I        Y +RLD+EL VI +M F  YFLIV D
Sbjct: 296  MNEEFERLCRE----GLQRRL--NTITYEVDEGKYWKRLDYELGVIKQMGFPAYFLIVQD 349

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK + IPVGPGRGS AGS+ A++L IT++DPL + LLFERFLN +R+SMPD D+DF
Sbjct: 350  FINWAKDHRIPVGPGRGSAAGSIVAWSLKITNLDPLPYDLLFERFLNVERVSMPDIDVDF 409

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C+ RR EV++Y   KYG +RVAQI TFG+++ KA ++DVGRAL M + + DR+ KLIP+D
Sbjct: 410  CERRRLEVVKYCAEKYGVDRVAQITTFGTMKTKAVIKDVGRALGMSFGETDRIAKLIPDD 469

Query: 483  PAHPVSL-----------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            PA    L            A+   +   +    DP V +L++IS +LEGL RHASTHAAG
Sbjct: 470  PAVMAKLLGVEKAKITVPNAVKAVTELDDMVATDPKVAKLIDISTRLEGLCRHASTHAAG 529

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI ++P+++ +P+Y+  + ++ VTQF+MK +EK GLIKFDFLGL+T+T+++  LD + +
Sbjct: 530  VVISNKPMTEYLPLYKGKKGEI-VTQFDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIRE 588

Query: 592  RGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            +G K  DL  +  DD ET+ +     T GIFQ+ESSGMR+ L  + PDC EDI+A+++LY
Sbjct: 589  QGKKAPDLETLHLDDPETFAIFAKGDTDGIFQVESSGMRKYLRMLGPDCFEDIVAMLALY 648

Query: 651  RPGPIDNIVVYN--------NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            RPGP+  I  +          RK+G+  +   HP ++  LK T GV++YQEQVM  A ++
Sbjct: 649  RPGPLGMIGSHGVSMVDEFIMRKHGEIAVTYPHPSLEETLKPTYGVMVYQEQVMATAMVI 708

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            + YSL E D+LRRAMGKKI EEM KQ+ RF+ G+ +NGI   +A +IF+ + KFA YGFN
Sbjct: 709  ANYSLGEGDLLRRAMGKKIAEEMAKQRSRFLEGSRENGIDDAVANDIFDTMEKFAAYGFN 768

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            KSH+AAYA+ISY TA++K H+PVEF+AA M+ EM+N +KI  +    R  +I +  P +N
Sbjct: 769  KSHSAAYALISYHTAYLKAHFPVEFMAALMSTEMNNTDKIIMYVNACRDMDITVRQPDIN 828

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRV 881
                 F V +  I +++AAIK VG      I+   A++ PF ++ DFC RV+ +++ +RV
Sbjct: 829  AGQARFSVKNGEILFAMAAIKNVGEEAINEIVAERAEQGPFLNIFDFCERVNLRRVTKRV 888

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNI----QKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            LESL+ AGALDCF  SR  LL+ LD      QK A+  E    N  + +    K   + +
Sbjct: 889  LESLIKAGALDCFSCSRAALLEDLDKAVALGQKKAKEKESGMLNMLDLLGGGGKSDATAQ 948

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
             T           + + E+ VLGF+ SGHPL  Y+  ++++     E+      G  +R+
Sbjct: 949  PTCSLCEEFEDREKLQLEKEVLGFFLSGHPLLAYRHDMQRLRTVTLEDCKTIPNGTEVRV 1008

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            A ++   +Q  TRKG  + +    +     E    P
Sbjct: 1009 AVIIPDFKQHITRKGDPMAFCNAEDLTTYGEITMLP 1044


>gi|301049902|ref|ZP_07196828.1| DNA polymerase III subunit alpha [Escherichia coli MS 185-1]
 gi|300298355|gb|EFJ54740.1| DNA polymerase III subunit alpha [Escherichia coli MS 185-1]
          Length = 1144

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1040 (41%), Positives = 623/1040 (59%), Gaps = 54/1040 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59   DLLGDE--------LTHLTVLAANNIGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953
             SL +  K A    K       ++F    G  ++    E   +E S          V  +
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935

Query: 954  NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             E+  LG Y +GHP++ Y K I R  G    ++   T RG     A +VV+ +   T++G
Sbjct: 936  GERETLGLYLTGHPINQYLKEIERYAGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRG 995

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +RIG  T  + +   E   F
Sbjct: 996  NRIGICTLDDRSGRLEVMLF 1015


>gi|312966321|ref|ZP_07780547.1| DNA polymerase III subunit alpha [Escherichia coli 2362-75]
 gi|312289564|gb|EFR17458.1| DNA polymerase III subunit alpha [Escherichia coli 2362-75]
 gi|323190416|gb|EFZ75691.1| DNA polymerase III subunit alpha [Escherichia coli RN587/1]
          Length = 1144

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1040 (41%), Positives = 623/1040 (59%), Gaps = 54/1040 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59   DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLVFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953
             SL +  K A    K       ++F    G  ++    E   +E S          V  +
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935

Query: 954  NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             E+  LG Y +GHP++ Y K I R +G    ++   T RG     A +VV+ +   T++G
Sbjct: 936  GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRG 995

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +RIG  T  + +   E   F
Sbjct: 996  NRIGICTLDDRSGRLEVMLF 1015


>gi|238796624|ref|ZP_04640131.1| DNA polymerase III subunit alpha [Yersinia mollaretii ATCC 43969]
 gi|238719602|gb|EEQ11411.1| DNA polymerase III subunit alpha [Yersinia mollaretii ATCC 43969]
          Length = 1171

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1056 (41%), Positives = 623/1056 (58%), Gaps = 49/1056 (4%)

Query: 4    YLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            YL+ + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A
Sbjct: 9    YLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSA 68

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              AG++PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y  
Sbjct: 69   HGAGVKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQR 118

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDR 181
              G     I   WL +   EGLI+L+GG  G + R F    +Q    + L F ++ F D 
Sbjct: 119  GYGAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGR-FILRGNQAQVDQCLEFYQEHFPDS 176

Query: 182  LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ L R  R  +       V LA    LP+VATN+  F+ E D++AH++ +A+     +
Sbjct: 177  YYLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTL 236

Query: 241  SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E
Sbjct: 237  VDPKRPKNYSPQQFMRDEEQMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPTGE 296

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGY 356
                    E+ L  K+  GLE RL          AQ   +Y +RL+ EL VI +M F GY
Sbjct: 297  M-----STEDFLVEKSKQGLEERLELLFPDPEERAQKRAEYDERLEIELKVINQMGFPGY 351

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMP
Sbjct: 352  FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMP 411

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ 
Sbjct: 412  DFDVDFCMEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 471

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KL+P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI  
Sbjct: 472  KLVPPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAP 530

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
              ++   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K 
Sbjct: 531  TKITDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKT 590

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+R
Sbjct: 591  GLEPIDIASIPLEDQKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFR 650

Query: 652  PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PGP+ + +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSG
Sbjct: 651  PGPLQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSG 710

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YSL  AD+LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKS
Sbjct: 711  YSLGGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKS 770

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+ 
Sbjct: 771  HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSG 830

Query: 825  CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVL 882
               F V D   I Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+L
Sbjct: 831  LYHFHVNDEGEIVYGIGAIKGVGEGPIEAMLEARKEGGHFKELFDLCARVDTKKLNRRIL 890

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E L+ +GA D  G  R  L+ SL    K A    K       ++F    G  +D     +
Sbjct: 891  EKLIMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMF----GVLADAPEQVE 946

Query: 943  FSVEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIR 996
             S  N       +  + E+  LG Y +GHP+  Y K I R  G +  ++   T RG    
Sbjct: 947  QSYANVPPWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTT 1006

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 1007 AVGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|330807796|ref|YP_004352258.1| DNA polymerase III alpha subunit [Pseudomonas brassicacearum subsp.
            brassicacearum NFM421]
 gi|327375904|gb|AEA67254.1| DNA polymerase III alpha subunit [Pseudomonas brassicacearum subsp.
            brassicacearum NFM421]
          Length = 1173

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1068 (40%), Positives = 627/1068 (58%), Gaps = 71/1068 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  AGI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G         +L ++N  K P   +  I LLV  A GY+ L EL+SR ++  Q   S+
Sbjct: 64   ICGA--------DLWLSN--KDPDAPLSRISLLVMNALGYRNLTELISRGFIDGQRNGSI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ E  +EGLIML+    G I  A    + + AE     +  +F DR Y+ +QR 
Sbjct: 114  IIEREWVAE-ASEGLIMLSAAKEGEIGLALLSGNPEEAETLARDWMSVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +R  D       V LA     PLVATN+  F+ ++D+EAH+  + +     +   D PR 
Sbjct: 173  NRPNDEEHLHAAVALADKIGAPLVATNDVRFIKQDDFEAHETRVCIGEGRAL---DDPRR 229

Query: 249  TPDH----YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            + ++    YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I 
Sbjct: 230  SKNYSNQQYLKSAEEMAELFSDLPEALENTVEIAKRCNIDVKLGKHFLPNFPIPDGMTI- 288

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLI 359
               +   R  +  GLE RL+        + Y A  Q Y  RL+FEL++I +M F GYFLI
Sbjct: 289  ---DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 346  VMDFIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+I
Sbjct: 406  VDFCMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMI 465

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +    +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI    L
Sbjct: 466  PFEVGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKL 524

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV   
Sbjct: 525  TDFSPIYCDEEGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEE 584

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP
Sbjct: 585  PLDIAFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGP 644

Query: 655  IDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L
Sbjct: 645  LQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTL 704

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  FI G + NGI   +A NIF+L+ KFA YGFNKSH+A
Sbjct: 705  GGADMLRRAMGKKKPEEMAKQRGGFIEGCATNGIDPDLAGNIFDLVEKFAGYGFNKSHSA 764

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AY ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   +++  P VN     
Sbjct: 765  AYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFK 824

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V D  RI Y L AIKGVG      I EA  D PF  L DFC+RVD K++N+R L+ L+
Sbjct: 825  FTVNDEGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLI 884

Query: 887  FAGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--- 928
             +GALD  G                +R  LL +++   K A+   +   + H ++F    
Sbjct: 885  RSGALDRLGPYFQDEPKAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLF 944

Query: 929  --HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
               +   + +    ++ +++    R + E+  LG Y +GHP+D Y+  +R+       + 
Sbjct: 945  VEEDADVYGNHRKAKELTLKE---RLKGEKDTLGLYLTGHPIDEYEGEIRRFA----RQR 997

Query: 987  VATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  ++   +   +A M+++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 998  IIDLKPARDTQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045


>gi|325576846|ref|ZP_08147461.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus
            parainfluenzae ATCC 33392]
 gi|325161052|gb|EGC73170.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus
            parainfluenzae ATCC 33392]
          Length = 1159

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1057 (40%), Positives = 627/1057 (59%), Gaps = 56/1057 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++G   +  ++   AAD   A+A+TD  N    + F  +  +
Sbjct: 1    MSAKPRFVHLRTHTDFSMIDGIAKVKPLVKACAADNMVALALTDFTNFCGVVRFYGETLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PIIG   D+ ++ +L     G+  F    ++ LL    EGY+ +  L+S+ Y   +
Sbjct: 61   SGIKPIIGA--DVHVKSDL----CGEELF----TLTLLAKNNEGYKNITLLLSKAY--QR 108

Query: 125  GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            G   +  I   WL E   EG+I+L+GG+ G I +     +S  AE  +  +++ F D  Y
Sbjct: 109  GYVDLPYIDREWLIE-HREGVIILSGGTQGDIAKKLLKENSSEAESAVSFYQEFFSDHFY 167

Query: 184  VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            ++L R    D  R  Q  ++LA  H+LPLVATN+ +FL+ +D+EAH++ +A+     +  
Sbjct: 168  LSLSRTGRPDEERYIQAALKLAEEHDLPLVATNDVVFLAPDDFEAHEIRVAIHDGYTLDD 227

Query: 243  KDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RP R T   Y ++  EM  +F+D+P ALENTV IA+RC+  L++    LP+F   E  
Sbjct: 228  PKRPKRYTEQQYFRSEEEMCDLFADIPSALENTVLIAQRCNVTLRLGQYFLPQFPTGEL- 286

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L  KA  GLE RLA        +     +Y +RL  EL+VI +M F GYFL
Sbjct: 287  ----STEDYLVMKAKEGLEERLAFLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC D RD VI +V + YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ K+
Sbjct: 403  DVDFCMDGRDRVIDHVADTYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKM 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   +  +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    
Sbjct: 463  IPPDPGMTLD-KAFEAEPQLQVAYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSL 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595
            ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R  +   
Sbjct: 522  ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLAREGK 581

Query: 596  --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPG
Sbjct: 582  PPVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641

Query: 654  PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+
Sbjct: 642  PLQSGMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYT 701

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+
Sbjct: 702  LGGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N    
Sbjct: 762  AAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINVGKH 821

Query: 827  DFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884
             F V +N  I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ES
Sbjct: 822  HFSVNENGEIVYGIGAIKGVGEGPIDALITARNEGGIFRDLFDLCARVDLKKINRRTFES 881

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ +GA D  G  R  L ++L++  K +    K+      ++F          +T     
Sbjct: 882  LIMSGAFDKLGPHRAALSKNLEDALKASDQHAKDEAMGQADMFG--------VLTETHEE 933

Query: 945  VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
            VEN+             + E+  LG Y S HP+  Y   L        ++     RG   
Sbjct: 934  VENAYAHTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYSSTRLKDLTPNRRGQIS 993

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              A ++VS +   T+KG+RIG  T  + +   +   F
Sbjct: 994  TAAGLLVSTRFATTKKGNRIGIATIDDRSGRLDLTLF 1030


>gi|293394718|ref|ZP_06639010.1| DNA-directed DNA polymerase III alpha subunit [Serratia odorifera DSM
            4582]
 gi|291422844|gb|EFE96081.1| DNA-directed DNA polymerase III alpha subunit [Serratia odorifera DSM
            4582]
          Length = 1172

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1051 (41%), Positives = 623/1051 (59%), Gaps = 48/1051 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 14   PRFIHLRVHSDYSMIDGLAKVGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGAGIK 73

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q       +  + +L +  +GYQ L  L+SR Y    G   
Sbjct: 74   PIIGADFHV----------QSDVLGDELAQLTVLAANNDGYQNLTLLISRAYQRGYGAAG 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+GG  G + +     +    E+ L  +++ F D  Y+ L R
Sbjct: 124  PIIDRDWLVE-HREGLILLSGGRMGDVGKFLLRGNHAQVEQCLAFYQQYFPDNYYLELIR 182

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V LA   +LP+VATN+  FL E+D++AH++ +A+     +    RPR
Sbjct: 183  TGRPDEENYLHAAVALATERDLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPR 242

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y++N  EM  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 243  NYSPQQYMRNEDEMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM-----T 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL          AQ   +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 298  TEDFLVAKSKEGLEERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEF 357

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K NN+PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 358  IQWSKDNNVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 417

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 418  MEKRDLVIEHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 477

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 478  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 536

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 537  PLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINKRRAKTDLPPIDI 596

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 597  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 656

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 657  MVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 716

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   GI   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 717  MLRRAMGKKNPVEMAKQRGGFEDGAKARGIDGELSIKIFDLVEKFAGYGFNKSHSAAYAL 776

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 777  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYHFHVN 836

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSKKLNRRVLESLVF 887
            D+  I Y + AIKGVG      I+EA        F  L D C+R D KKLNRR+LE L+ 
Sbjct: 837  DDGEIVYGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIM 896

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            +GA D  G  R  L+ SL +  K A    K       ++F    G  ++     + S  N
Sbjct: 897  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQVDMF----GVLAEAPEQVEQSYAN 952

Query: 948  SS-----VRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
             +     V  + E+  LG Y +GHP+  Y K I R  G +  ++   T RG       +V
Sbjct: 953  VAPWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLV 1012

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V+ +   T++G+RIG  T  + +   E   F
Sbjct: 1013 VAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1043


>gi|255020984|ref|ZP_05293039.1| DNA polymerase III alpha subunit [Acidithiobacillus caldus ATCC
            51756]
 gi|254969589|gb|EET27096.1| DNA polymerase III alpha subunit [Acidithiobacillus caldus ATCC
            51756]
          Length = 1166

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1024 (42%), Positives = 618/1024 (60%), Gaps = 31/1024 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS YSL +G + +  ++ +      PAIA+TD  NLF+ ++F Q A  AG++ 
Sbjct: 5    GFVHLHVHSEYSLEDGIIPIKALIRRCVDWGMPAIAVTDHGNLFALVKFYQAAREAGVKA 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++       L   +Q + P     S+VLL     G++ L  L+SR YL        
Sbjct: 65   IIGSEV------WLCPPDQPEDP----SSLVLLCRDRTGFRNLSRLLSRGYLEGLRHGRP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            ++   WLQ   TEGLI L+  + G + RA   +   VA +    + + F +  Y+ LQR+
Sbjct: 115  QLQHDWLQG-HTEGLIALSAAARGDVGRALLQHQPDVARQWAERYAQWFPEAFYLELQRN 173

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
                     +  V LAY  +LP+VATNN+ FL  ED++A D    +A    +  + RPR 
Sbjct: 174  GEPGQEALLAATVDLAYALDLPVVATNNAHFLDAEDFKAFDARQCIAAGYTLDDERRPRR 233

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              P+H L + +EM+  F DLPEA   TVEIA+RC+  L +    LP +   +   I    
Sbjct: 234  FNPEHRLASPAEMLERFRDLPEACLQTVEIAKRCTVELTLGRYALPDYPTPDGSPI---- 289

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +   +  A  GL  RL    I  G  A  YR+RL  E++VI +M F GYFLIVADFIQWA
Sbjct: 290  DVYFQKAAEQGLAERLEALGI-DGAAATPYRERLLREVDVIRQMGFPGYFLIVADFIQWA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K +++PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLN +R+SMPDFD+DFC ++R
Sbjct: 349  KDHDVPVGPGRGSGAGSLVAYALRITDLDPIAYGLLFERFLNVERVSMPDFDVDFCMEQR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI+YV +KYG +RV QIITFG+L+A+A +RDVGR L +PY  VD+L KL+P D    +
Sbjct: 409  DRVIQYVADKYGRDRVGQIITFGTLKARAVVRDVGRVLNLPYGFVDQLAKLVPGDLGMTL 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            + +A+ +    R  +  +  V  LL+I+ +LEG  RHASTHA G+VIG  PL+  +P++ 
Sbjct: 469  A-RALEESEELRRRQTEEDDVRELLDIALRLEGRPRHASTHAGGVVIGPEPLADRLPLFS 527

Query: 548  D-VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDLSLI 601
            D       VTQ +   +EK GL+KFDFLGL+TLT+L  ++  +     A+    +DL  I
Sbjct: 528  DATEGSGNVTQLDKDDVEKMGLVKFDFLGLRTLTILDIAVKGINRARAAEGKAALDLQKI 587

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
            P DD  T+ LL +  T+ +FQLESSGMR  L  +QPD   DI+ALV+L+RPGP+ + +V 
Sbjct: 588  PLDDPATFALLKSTHTVAVFQLESSGMRDLLRRLQPDNFGDIVALVALFRPGPLQSGMVD 647

Query: 661  -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RK+G+  +   HP + P+L ET GV++YQEQVMQ AQ+L+GYSL  AD+LRRAMGK
Sbjct: 648  DFIARKHGRAAVSYPHPDLKPVLAETYGVMVYQEQVMQAAQILAGYSLGGADILRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM KQ+E F+ GA++ GI    A  IF+L+ KFA+YGFNKSH+AAYA++SYQTA++
Sbjct: 708  KKPEEMAKQREIFLQGAARRGIDSHQAGAIFDLMEKFAEYGFNKSHSAAYALVSYQTAYL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYP  F+AA +T +MD+ +KI     + R+  + I+ PSV    ++F      I + L
Sbjct: 768  KAHYPSHFMAAVLTADMDHTDKIVAMIGECRRMGLAILSPSVQHSALEFLPVAEGIRFGL 827

Query: 840  AAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKG+G    + I+ A  AD PF    DF  RVD ++LNRR LE+L+ AGALD  G SR
Sbjct: 828  GAIKGLGRGAVQAIIAAREADGPFRDFYDFLCRVDLQRLNRRALEALIKAGALDDLGPSR 887

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              LL SLD   + A      R ++  ++    +   S     E         R + E+  
Sbjct: 888  ECLLASLDAFLEAAAQTRAARDSQQISLLGAAEEQPSAPPWREA-PAWTGIERLQRERET 946

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LGFY SGHPL  ++P L  MG +  +    T     + +A +VV ++  ++++G RI ++
Sbjct: 947  LGFYLSGHPLLEHRPQLAAMGAQ--DLGGLTAGSGLVLVAGIVVGRRSTRSKRGDRIYFL 1004

Query: 1019 TFSE 1022
            T  +
Sbjct: 1005 TLED 1008


>gi|315127143|ref|YP_004069146.1| DNA polymerase III subunit alpha [Pseudoalteromonas sp. SM9913]
 gi|315015657|gb|ADT68995.1| DNA polymerase III subunit alpha [Pseudoalteromonas sp. SM9913]
          Length = 1163

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1062 (41%), Positives = 616/1062 (58%), Gaps = 64/1062 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS +S+++G      I+ K    + PA+AITD  N    + F   A  AGI
Sbjct: 3    APEFVHLRVHSDFSMVDGLAKTKPIVAKAQELEMPALAITDQMNFCGLVRFYGAAHNAGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTP-FPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQG 125
            +PI+G    +            ++P FP  PS + LL     GY+ +  L+S+ Y     
Sbjct: 63   KPIVGADFWV------------RSPEFPDEPSRLTLLAKDNIGYKNITLLISKAYQRGHV 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   WL ++  EGLI+L+G   G + +A    +  + E  +  +K+ F D  Y+ 
Sbjct: 111  FHRPVIDREWLVDL-KEGLIILSGAKDGDLGKALIKGNPAIVESVVSFYKQHFSDHYYIE 169

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R +R  +       V+LA   +LP+VATN  +FL  E++EAH++ +A+     +  K 
Sbjct: 170  LIRTNRAQEENYLHMAVELATNEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDKR 229

Query: 245  RP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP R + + YLK   +M  +FSD+PEAL+NTVEIA+RC+  +Q+    LP +        
Sbjct: 230  RPKRFSQEQYLKTPEQMAELFSDIPEALQNTVEIAKRCNVTVQLGEYFLPDYPTGSL--- 286

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLI 359
              + +  L   +  GLE RL Q         Q+    Y +RL  EL+VI +M F GYFLI
Sbjct: 287  --KIDEFLVKVSQDGLEERL-QFLFPDEQERQEKRGEYDERLKIELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIDHVSALYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   ++ +A   + R +EA   D  V  L+++ + LEG  R+A  HA G+VI    +
Sbjct: 464  PGDPGMTLA-KAFDVEPRLQEAYDGDEEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---- 595
            +    +Y D     PVTQF+   +E AGL+KFDFLGL+TLT+LQ +LD   +R  +    
Sbjct: 523  TDFAALYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWALDMTNERLKREGKQ 582

Query: 596  -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VD++ IP DD ++  LL    T  +FQLES GM+  +  ++PDC ED+IALV+L+RPGP
Sbjct: 583  PVDINTIPLDDKKSIELLLRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V N  +RK G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKLGREEISYPDAQYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSTFEEGARNNGIDGELAIKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT WMKTHYP EF+AA M+ +MDN +KI     +     + ++PP VN     
Sbjct: 763  AYALVSYQTLWMKTHYPAEFMAAVMSADMDNTDKIVTLVDECENMKLTLLPPDVNAGEYK 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V     I Y + AIKGVG      I+EA A   PF  L DFC+RVD K+LN+RV E L
Sbjct: 823  FTVNLQGEIVYGIGAIKGVGEAPVDAILEARAKGGPFKDLFDFCARVDLKRLNKRVTEKL 882

Query: 886  VFAGALDCFGYSRMQ-----LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
            ++AGALD  G  + Q     LL SL +  + A    K       ++F          +  
Sbjct: 883  IYAGALDQLGPEKTQPGRATLLASLKDAMRAADQHNKAELLGQSDLFGL--------LAT 934

Query: 941  EKFSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
            E   VE + ++          + E+  LG Y +GHP++ Y+  L         +   T R
Sbjct: 935  EPDEVEQAFIKATPLTDNQWLDGEKDTLGLYLTGHPINQYRRELGHYTSGRLIDLQPTNR 994

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  A +V++ +    +KG+R G +T  + +   +   FP
Sbjct: 995  DVVSTGAGLVIAARTLINKKGNRWGLITLDDKSARIDVRLFP 1036


>gi|224582079|ref|YP_002635877.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Paratyphi C strain RKS4594]
 gi|224466606|gb|ACN44436.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Paratyphi C strain RKS4594]
          Length = 1144

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1040 (41%), Positives = 621/1040 (59%), Gaps = 54/1040 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K A+   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVH--- 57

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 58   NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R  R  +       
Sbjct: 110  EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIRTGRQDEETYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEALENTVEIA+RC+  +++    LP+F   +        E+ L  K+  GL
Sbjct: 230  MCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDYLVKKSKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   ++ +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLA-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953
             SL +  K A    K       ++F    G  ++    E   +E S          V  +
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935

Query: 954  NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             E+  LG Y +GHP++ Y K I R +G    ++   T RG     A +V++ +   T++G
Sbjct: 936  GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRG 995

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +RIG  T  + +   E   F
Sbjct: 996  NRIGICTLDDRSGRLEVMLF 1015


>gi|94986701|ref|YP_594634.1| DNA polymerase III, alpha subunit [Lawsonia intracellularis
            PHE/MN1-00]
 gi|94730950|emb|CAJ54313.1| DNA polymerase III, alpha subunit [Lawsonia intracellularis
            PHE/MN1-00]
          Length = 1169

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1052 (40%), Positives = 634/1052 (60%), Gaps = 49/1052 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  HS YSLL+GA+ L+ +  +      PA A+TD  NLF+A  F       GI+P
Sbjct: 3    NFVHLHCHSEYSLLDGAIRLDALCARTKEFGMPAAAVTDHGNLFAATHFYSICKEYGIKP 62

Query: 70   IIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IIGC++ +  D  D L   ++ +        ++LL    EGY  L++LV+R YL D    
Sbjct: 63   IIGCEVYVTKDHADKLSKFSKARH------HLILLARNKEGYHNLVKLVTRGYL-DGFHY 115

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF------------FFNSSQVAEKRLLTFK 175
              R+  + L++  + G+  L+   +G + R              F ++  +A++    + 
Sbjct: 116  KPRVDKTLLKQFSS-GITALSACLAGELPRTIMGKNIFVEKGGTFDDAISIAQE----YA 170

Query: 176  KLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
             ++  + Y+ +Q +   ++ +   ++ +LA    LPLVATN+  +L+ +D EAHD+L+ V
Sbjct: 171  SIYPGQFYLEVQANMLPEQQKVNEKLYELAEYTNLPLVATNDCHYLNADDVEAHDILLCV 230

Query: 235  AHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
                  +  DR R    D Y K+  EM   FS LP A+ENT++IA  CS  +     + P
Sbjct: 231  QTQAKFNDTDRMRFNATDLYYKSSEEMEKAFSHLPIAIENTIKIAESCSVEMDFSKNLFP 290

Query: 294  RFIEKECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             +      ++ K    ++E R  A  GL+ RL      K    ++Y +RL+ EL++I +M
Sbjct: 291  VY------ELPKGVTPDDEFRRLAREGLQKRLEVYPNKKQLTTENYWKRLEQELDIICKM 344

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFLIV DFI WAK NNIPVGPGRGS  GS+ A+AL IT+IDPL ++LLFERFLN +
Sbjct: 345  GFPGYFLIVQDFINWAKDNNIPVGPGRGSATGSLVAWALRITNIDPLPYNLLFERFLNIE 404

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+S+PD D+DFC+D+R +VIRYV NKYG   VAQI TFG ++AKA +RD+GR L M + +
Sbjct: 405  RISLPDIDVDFCEDKRGDVIRYVMNKYGVNSVAQITTFGKMKAKAVVRDIGRVLDMSFKE 464

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             D + KLIP+D  H   L+A+  + + +     +P + RLL+IS KLEGL RHASTHAAG
Sbjct: 465  TDNIAKLIPDD-LHMTILKAMEVEPKLQALYNEEPHIKRLLDISMKLEGLVRHASTHAAG 523

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +V+ D+P+ + +P+YR  + +L VTQF+MK +EK GL+KFDFLGL+T+TL+  +L  +  
Sbjct: 524  VVVSDKPMDEYLPLYRGKKGEL-VTQFDMKMVEKVGLVKFDFLGLRTMTLIHTTLKTIKD 582

Query: 592  RG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            +G +  +L  +P DD +TY LL+   T G+FQ+ESSGMRQ L  ++P+C ED+IA+++LY
Sbjct: 583  QGKIPPNLDTLPLDDPKTYELLSKGDTDGVFQVESSGMRQYLRMLKPNCFEDLIAMLALY 642

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+ + +V  +  RK+G   I    P +   LK+T GVI+YQEQVMQIAQ+++GYSL 
Sbjct: 643  RPGPLGSGMVDEFIKRKHGTVTIEYPLPSLKDCLKDTYGVIVYQEQVMQIAQIVAGYSLG 702

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            EAD+LRRAMGKK  E M K++ RF+ GA KN ++++IA +IF+L+ KFA+YGFNKSH+AA
Sbjct: 703  EADLLRRAMGKKNPEAMAKERTRFVEGAIKNNVTESIASDIFDLMEKFAEYGFNKSHSAA 762

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+ISY TA++K H+ +EF+AA +T E  N  KI K+    +   I I+ P + T C +F
Sbjct: 763  YALISYHTAYLKAHFTLEFMAALLTSESGNQNKILKYTAACKDMGIDILKPDIQTSCREF 822

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V DN I + L AIK VG      I+     D PF SL D   RV+ KK+ RRVLESLV 
Sbjct: 823  IVKDNSIVFGLCAIKNVGDDAIEKIITTRKKDGPFLSLLDMSFRVNLKKVTRRVLESLVK 882

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
             GA D FG SR  +L +LD I        K+  +   ++ A      S  +    F+ E 
Sbjct: 883  GGACDSFGCSRAGMLTALDKIIARTYKKIKDEQSNQGSLLAFAPKIESVSLPGIGFTCEE 942

Query: 948  SSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
             ++       +   E+  LGF+ + HPL  Y+  + ++G++  EE         I+ A +
Sbjct: 943  QNMPEWDEDEKLLYEKEALGFFLTSHPLQTYRQEIYRLGLQPLEEVREMNDKITIKSAII 1002

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V + ++   ++G+R+ +V   +     E  FF
Sbjct: 1003 VNNIREILNKRGNRMAFVRVEDLTASAEVTFF 1034


>gi|307822683|ref|ZP_07652914.1| DNA polymerase III, alpha subunit [Methylobacter tundripaludum SV96]
 gi|307736287|gb|EFO07133.1| DNA polymerase III, alpha subunit [Methylobacter tundripaludum SV96]
          Length = 1164

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1048 (41%), Positives = 632/1048 (60%), Gaps = 42/1048 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+FVHL++H+ +SL++G + +  ++ ++A    PAIA+T+  NLFS ++F + A   GI+
Sbjct: 3    PAFVHLRLHTEFSLVDGIVKIKPLVKRLAELNMPAIAVTEHANLFSLVKFYKAALGQGIK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             I G  + +   ++           P  P  + LLV+   GY  L EL+S+ Y   Q + 
Sbjct: 63   AIAGSDVLVFNPED-----------PATPYRLTLLVNNHAGYITLTELISKAYQEGQHQG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   W+ E    GLI L+G  SG I +A    +   A++    +  LF    Y+ LQ
Sbjct: 112  VPMLRQEWI-EANHNGLIALSGAMSGCIGKALLAENHDAAKRLAEFWGALFEQSFYLELQ 170

Query: 188  RHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R    +  R  +  V+LA    LP+VATN+  F+ ++D+ AH+V + +  S V+    RP
Sbjct: 171  RVGKPEEERYIAAAVELALATGLPVVATNDVRFVYQQDFAAHEVRVCINQSRVLDDTRRP 230

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  T   YL++  EM ++F+D+PEALENTVEIA+RC+  L +    LP F   E  ++ +
Sbjct: 231  KDYTDQQYLRSIEEMQALFADIPEALENTVEIAKRCNLQLTLGKNFLPDFPVPEGMNLGE 290

Query: 306  EEENELRNKAVAGLEVRLAQ-GAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVA 361
                 +  +++ GLE RL    A+ KG   ++   Y  RLDFEL +I +M F GYF+IVA
Sbjct: 291  F----MAEESMKGLEERLQHYPAVGKGTDEENRRIYYDRLDFELKMITQMGFPGYFMIVA 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQWAK N IPVGPGRGSGAGS+ AYAL ITD+DP+ F LLFERFLNP+R+SMPDFD+D
Sbjct: 347  DFIQWAKNNLIPVGPGRGSGAGSLVAYALKITDLDPIEFDLLFERFLNPERVSMPDFDVD 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI YV   YG + VAQIIT+GS+ AKA +RDVGR L   Y  VDRL KL+P 
Sbjct: 407  FCMDRRDEVIDYVARHYGRDHVAQIITYGSMAAKAVIRDVGRVLGFGYGFVDRLSKLVPF 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    ++ +A+ D    ++    +  V  L++++  LEG  R+A  HA G+VI    L+ 
Sbjct: 467  EIGMTLT-KALKDSPELKQLYDTEEEVKALIDMALSLEGTSRNAGKHAGGVVISPTKLTD 525

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D   +  VTQF+   +E  GL+KFDFLGL+TLT++  +L  +  +  +     V
Sbjct: 526  FTPLYCDQDGNNLVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWALQDINAKHKQLGKPLV 585

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+++IP DD ++Y LLT   T  +FQLES GM++ ++ ++PDC +DIIALV+L+RPGP++
Sbjct: 586  DITIIPRDDPDSYKLLTAAQTTAVFQLESRGMKELIKKLKPDCFDDIIALVALFRPGPLE 645

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +V  Y N K+G  K    HPL++P+LK T GVI+YQEQVMQIA+ ++ Y+L  AD+LR
Sbjct: 646  SGMVDDYINVKHGA-KAEYAHPLLEPILKPTNGVILYQEQVMQIAREMALYTLGGADMLR 704

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM K++++F +GA +N + + IA  +F+L+ KFA YGFNKSH+AAYA+++Y
Sbjct: 705  RAMGKKKPEEMAKERDKFTAGAIENQVDEKIATYVFDLMEKFAGYGFNKSHSAAYALVAY 764

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-N 833
            QTAW+K HY  EF+AA M+ +MDN +K+    ++ +Q  +++ PP++N     F V D  
Sbjct: 765  QTAWLKAHYQPEFMAAVMSADMDNTDKVVILIEECKQMKLEVCPPTINVSKYKFTVNDAG 824

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L A+KGVG      ++ E  A+  F  L D C RVD +K NRRVLE+L+ AGA D
Sbjct: 825  HIVYGLGALKGVGEAAIEEMLVEREANGLFSGLYDLCKRVDLRKFNRRVLEALIRAGAFD 884

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVE--NSS 949
             F  +R   L  L  + K A+   KN      ++F        +D +      VE  + +
Sbjct: 885  EFDDNRAGHLAELPTVLKVAEQHGKNAQTGQNDLFGLAVNAENADDVDAYNTVVEPWSEN 944

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-----RGNNIRLAAMVVSK 1004
             R   E+ VLG + +GHP++ Y+  LR+      E  +A +     R    R A +VV  
Sbjct: 945  ERLAAEKLVLGLFLTGHPINQYEAELRQFTNGTIESLLANVERSKSRKMEARTAGLVVEV 1004

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + ++T+ G  +G+ T  +     E   F
Sbjct: 1005 RTRQTKNGKVMGFATIDDRTGRLEIAAF 1032


>gi|54296983|ref|YP_123352.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Paris]
 gi|53750768|emb|CAH12175.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Paris]
          Length = 1148

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1047 (41%), Positives = 642/1047 (61%), Gaps = 53/1047 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VH+ +SL++G + +  ++  + A     +A+TD  NLF+A++  + A  AGI+PI
Sbjct: 5    FVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKPI 64

Query: 71   IGCQL---DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IG  L   D++  DN             + S+VLL     GY+ L  LVS+ Y   Q   
Sbjct: 65   IGSDLPCHDLETPDN-------------IFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+ L W+ E  ++GLI L+GG  G I +A   N   +A KR L +  LF +R Y+ +Q
Sbjct: 112  QPRVQLQWIPEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQ 170

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            R  R  + +   ++V LA   +LPLVATN+  F++E+D++AH+  + +     ++   R 
Sbjct: 171  RTGRADELHYNEKLVALADELQLPLVATNDVRFINEDDFDAHEARVCIHEGYTLADPRRV 230

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + +   YL++  EM  +FSDLP AL+NTVEI++RC+  L++    LP F   +   +  
Sbjct: 231  QQYSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDGTTV-- 288

Query: 306  EEENELRNKAVAGLEVRLAQG---------AIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E  L + +  GLE RL Q           +A+G    +Y +RL  EL+VI  M F+GY
Sbjct: 289  --EAYLSHLSEIGLEERLKQLFRDKSEGELLVARG----EYDKRLKIELDVINNMGFAGY 342

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMP
Sbjct: 343  FLIVADFIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMP 402

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC + RD VI YV  KYG + V+QIITFG++ AKA +RDVGR L  PY  VD+L 
Sbjct: 403  DFDIDFCMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLA 462

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP +    +S +A+  +   R     +  V  L +++ KLEG+ R+A  HA G+VI  
Sbjct: 463  KLIPFELGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGVTRNAGKHAGGVVIAP 521

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592
              L+    +Y +  S   V+QF+   +E  GL+KFDFLGL+TLT++  +L  + ++    
Sbjct: 522  SQLTDFTAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENA 581

Query: 593  GVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            G+  +D+S IP  D  T+ LL    T  +FQLES GM++ +  +QPDC EDIIALV+L+R
Sbjct: 582  GLSPIDISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFR 641

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+ + +V  + +RK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L  
Sbjct: 642  PGPLQSGMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGA 701

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+E F  GA   G+ + +A +IF+L+ KFA YGFNKSH+AAY
Sbjct: 702  ADLLRRAMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAY 761

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+++YQTAW+K HYP  F+AA M+ +MDN +K+  F  +     +Q++PPS+N     F 
Sbjct: 762  ALVAYQTAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFT 821

Query: 830  VGDNR-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D + I Y L AIKGVG +    I+ E + + PF  L  FC R+D +K+NRRV+E+L+ 
Sbjct: 822  VSDEKTIIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIK 881

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            +GA D +   R  L  SL+   K A+   +N+++   ++F+  +    ++  +E  S   
Sbjct: 882  SGAFDIWKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDKADEQNYVESKSWSE 941

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVSKQ 1005
            +  R E E+ VLGFY +GHP D Y+   R++G  I    +   ++    I + A VV+ +
Sbjct: 942  AQ-RLEGEREVLGFYLTGHPADRYR---RELGDFIVPVGQLNPSLHKKAI-ICAQVVAIR 996

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T++G ++  +   +     +A  F
Sbjct: 997  KIITKRGKKLVIIGMDDATARIDAVVF 1023


>gi|307609756|emb|CBW99268.1| DNA polymerase III, alpha chain [Legionella pneumophila 130b]
          Length = 1148

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1047 (41%), Positives = 642/1047 (61%), Gaps = 53/1047 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VH+ +SL++G + +  ++  + A     +A+TD  NLF+A++  + A  AGI+PI
Sbjct: 5    FVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKPI 64

Query: 71   IGCQL---DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IG  L   D++  DN             + S+VLL     GY+ L  LVS+ Y   Q   
Sbjct: 65   IGSDLPCHDLETPDN-------------IFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+ L W+ E  ++GLI L+GG  G I +A   N   +A KR L +  LF +R Y+ +Q
Sbjct: 112  QPRVQLQWIPEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQ 170

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            R  R  + +   +++ LA   +LPLVATN+  F+ E+D++AH+  + +     ++   R 
Sbjct: 171  RTGRADELHYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRV 230

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + +   YL++  EM  +FSDLP AL+NTVEI++RC+  L++    LP F   +   +  
Sbjct: 231  QQYSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDGTTV-- 288

Query: 306  EEENELRNKAVAGLEVRLAQ-------GAI--AKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E  L + +  GLE RL Q       G +  A+G    +Y +RL  EL+VI  M F+GY
Sbjct: 289  --EAYLSHLSEIGLEERLKQLFRDKSEGELLAARG----EYDKRLKIELDVINNMGFAGY 342

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMP
Sbjct: 343  FLIVADFIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMP 402

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC + RD VI YV  KYG + V+QIITFG++ AKA +RDVGR L  PY  VD+L 
Sbjct: 403  DFDIDFCMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLA 462

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP +    +S +A+  +   R     +  V  L +++ KLEG+ R+A  HA G+VI  
Sbjct: 463  KLIPFELGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAP 521

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592
              L+    +Y +  S   V+QF+   +E  GL+KFDFLGL+TLT++  +L  + ++    
Sbjct: 522  SQLTDFTAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENA 581

Query: 593  GVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            G+  +D+S IP  D  T+ LL    T  +FQLES GM++ +  +QPDC EDIIALV+L+R
Sbjct: 582  GLSPIDISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFR 641

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+ + +V  + +RK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L  
Sbjct: 642  PGPLQSGMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGA 701

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+E F  GA   G+ + +A +IF+L+ KFA YGFNKSH+AAY
Sbjct: 702  ADLLRRAMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAY 761

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+++YQTAW+K HYP  F+AA M+ +MDN +K+  F  +     +Q++PPS+N     F 
Sbjct: 762  ALVAYQTAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFT 821

Query: 830  VGDNR-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D + I Y L AIKGVG +    I+ E + + PF  L  FC R+D +K+NRRV+E+L+ 
Sbjct: 822  VSDEKTIIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIK 881

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            +GA D +   R  L  SL+   K A+   +N+++   ++F+  +    ++  +E  S   
Sbjct: 882  SGAFDVWKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDKADEQNYVESKSWSE 941

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVSKQ 1005
            +  R E E+ VLGFY +GHP D Y+   R++G  I    +   ++    I + A VV+ +
Sbjct: 942  AQ-RLEGEREVLGFYLTGHPADQYR---RELGDFIVPVGQLNPSLHKKAI-ICAQVVAIR 996

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T++G ++  +   +     +A  F
Sbjct: 997  KIITKRGKKLVIIGMDDATARIDAVVF 1023


>gi|261253713|ref|ZP_05946286.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891]
 gi|260937104|gb|EEX93093.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891]
          Length = 1159

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1046 (40%), Positives = 621/1046 (59%), Gaps = 41/1046 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A + GI+
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPAVALTDFTNLCGLVKFYGTAHSCGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  MQ + +  ++       +  + +L +   GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGA--DFLMQ-SAEFGDE-------LTRLTVLAADNTGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+ +EG+I+L+GG SG I +A    + + AE+ L  ++  F DR Y+ L R
Sbjct: 114  PVIDKEWLTEL-SEGVIILSGGKSGEIGKALLKGNQKAAEECLAFYQTHFPDRFYLELTR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       ++LA   ++P+VATN  + L E  ++AH++ +A+     +    RP+
Sbjct: 173  TGRADEETYLHFALELAEQSDIPVVATNEVVILEESLFDAHEIRVAIHDGYTLEDPRRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP F  +       E
Sbjct: 233  NYSPQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM-----E 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E   L  K+  GLE RL         +     +Y  RL  EL VI  M F GYFLIV +F
Sbjct: 288  ETEFLVKKSEEGLEDRLEFLFPDPAVRAERRPEYDDRLKIELEVINNMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L   +  VDR+ KL+P DP
Sbjct: 408  MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHGFGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +    E    D  +  L+++ + LEG  R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFKAEPALPELYANDEEIKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V +
Sbjct: 527  PIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKPPVAI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP  D  +++LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + 
Sbjct: 587  ESIPLVDQASFNLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E +        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREAVSYPDEQWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTH+P EF+AA MT +MDN EK+     +  +  ++++PP +N     F V 
Sbjct: 767  VSYQTLWLKTHFPAEFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLYRFNVD 826

Query: 832  -DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +  I Y + AIKGVG      I+EA + D  F  L DFC+R+D KK+N+RV+E L++AG
Sbjct: 827  EEGAIVYGIGAIKGVGEGPIDAILEARNKDGHFKDLFDFCARIDLKKVNKRVIEKLIYAG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVE 946
            ALD  G  R  L+ SL++  K A    +       ++F            K T  K    
Sbjct: 887  ALDRLGPHRAALMASLNDAVKAASQHHQAEAFGQSDLFGVLTEAPEEVEHKYT--KVEPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ + 
Sbjct: 945  PEKVWLEGERDTLGLYLTGHPINAYIRELGKYTSCRLKDATPTRRDQSVTVAGLVIASRV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|148360386|ref|YP_001251593.1| DNA polymerase III subunit alpha [Legionella pneumophila str. Corby]
 gi|148282159|gb|ABQ56247.1| DNA polymerase III, alpha subunit [Legionella pneumophila str. Corby]
          Length = 1148

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1047 (41%), Positives = 641/1047 (61%), Gaps = 53/1047 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VH+ +SL++G + +  ++  + A     +A+TD  NLF+A++  + A  AGI+PI
Sbjct: 5    FVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKPI 64

Query: 71   IGCQL---DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IG  L   D++  DN             + S+VLL     GY+ L  LVS+ Y   Q   
Sbjct: 65   IGSDLPCHDLETPDN-------------IFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+ L W+ E  + GLI L+GG  G I +A   N   +A KR L +  LF +R Y+ +Q
Sbjct: 112  QPRVQLQWIPEF-SRGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQ 170

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R  + +   +++ LA   +LPLVATN+  F+ E+D++AH+  + +     ++   R 
Sbjct: 171  RTGRADELHYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRV 230

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  +   YL++  EM  +FSDLP AL+NTVEI++RC+  L++    LP F   +   +  
Sbjct: 231  QHYSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDGTTV-- 288

Query: 306  EEENELRNKAVAGLEVRLAQ-------GAI--AKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E  L + +  GLE RL Q       G +  A+G    +Y +RL  EL+VI  M F+GY
Sbjct: 289  --EAYLSHLSEVGLEERLKQLFRDKSEGELLAARG----EYDKRLKIELDVINNMGFAGY 342

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMP
Sbjct: 343  FLIVADFIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMP 402

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC + RD VI YV  KYG + V+QIITFG++ AKA +RDVGR L  PY  VD+L 
Sbjct: 403  DFDIDFCMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLA 462

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP +    +S +A+  +   R     +  V  L +++ KLEG+ R+A  HA G+VI  
Sbjct: 463  KLIPFELGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAP 521

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592
              L+    +Y +  S   V+QF+   +E  GL+KFDFLGL+TLT++  +L  + ++    
Sbjct: 522  SQLTDFTAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENA 581

Query: 593  GVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            G+  +D+S IP  D  T+ LL    T  +FQLES GM++ +  +QPDC EDIIALV+L+R
Sbjct: 582  GLSPIDISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFR 641

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+ + +V  + +RK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L  
Sbjct: 642  PGPLQSGMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGA 701

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+E F  GA   G+ + +A +IF+L+ KFA YGFNKSH+AAY
Sbjct: 702  ADLLRRAMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAY 761

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+++YQTAW+K HYP  F+AA M+ +MDN +K+  F  +     +Q++PPS+N     F 
Sbjct: 762  ALVAYQTAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFT 821

Query: 830  VGDNR-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D + I Y L AIKGVG +    I+ E + + PF  L  FC R+D +K+NRRV+E+L+ 
Sbjct: 822  VSDEKTIIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIK 881

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            +GA D +   R  L  SL+   K A+   +N+++   ++F+  +    ++  +E  S   
Sbjct: 882  SGAFDVWKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDKADEQNYVESKSWSE 941

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVSKQ 1005
            +  R E E+ VLGFY +GHP D Y+   R++G  I    +   ++    I + A VV+ +
Sbjct: 942  AQ-RLEGEREVLGFYLTGHPADQYR---RELGDFIVPVSQLNPSLHKKAI-ICAQVVAIR 996

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T++G ++  +   +     +A  F
Sbjct: 997  KIITKRGKKLVIIGMDDATARIDAVVF 1023


>gi|238918790|ref|YP_002932304.1| DNA polymerase III subunit alpha [Edwardsiella ictaluri 93-146]
 gi|238868358|gb|ACR68069.1| DNA polymerase III subunit alpha [Edwardsiella ictaluri 93-146]
          Length = 1162

 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1057 (40%), Positives = 631/1057 (59%), Gaps = 60/1057 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL VHS YS+++G      ++ K+AA   PA AITD  NL   ++F   A  AGI+
Sbjct: 4    PRFIHLHVHSDYSMIDGLAKTAPLVKKVAALGMPAFAITDHTNLCGLVKFYGSAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P++G  + +          + +T    + ++ LL    +GYQ L +L+S  Y    G + 
Sbjct: 64   PLVGADVLV----------RSETMGDELSALTLLACDNQGYQNLTQLISHAYQRGYGAEG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL      GLI+L+G   G + +     +  +A + +  +++ F D  ++ L R
Sbjct: 114  PTIDRDWLIAY-RAGLILLSGARQGDVGKLLLRGNQTLAGECVDFYQRHFPDSYFLELVR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   V+LA   +LPLVATN+  FL   D++AH++ +A+     +    R
Sbjct: 173  TGRPDE--ESYLHLAVELAQQRDLPLVATNDVRFLETSDFDAHEIRVAIHDGYTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +   Y+++  EM  +F+DLPEAL+N+VEIA+RC+  +++    LP+F   E     
Sbjct: 231  PRNYSAQQYMRSEEEMCELFADLPEALQNSVEIAKRCNVTIRLGEYFLPQFPTGEM---- 286

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVA 361
               E  L  KA  GLE RL      +   A+    Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -TTEAFLVKKAHEGLEERLTFLFPDEADRARLRPPYDERLEIELKVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLAFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD VI +V + YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDRVIDHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK----V 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + A+R  +    V
Sbjct: 525  FAPLYCDAEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRACQGLEPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDQKSFDILQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E++        H  + P+L+ T GVI+YQEQVMQIAQ+L+GYSL  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDREWQHESLKPVLEPTYGVILYQEQVMQIAQVLAGYSLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG++  +A++IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADLLRRAMGKKKPEEMAKQRSVFEEGARNNGVNGELAMHIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGQYHFH 824

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEA--SADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            V D   I Y + AIKGVG      I+EA  S ++  F  L D C+R D+KKLNRR++E L
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARTDTKKLNRRMMEKL 884

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + +GA D  G  R  L+ SL +  K A+   +       ++F    G  ++    E   V
Sbjct: 885  IMSGAFDRLGPHRAALMSSLSDALKAAEQHARAEAIGQVDMF----GVLAE----EPEQV 936

Query: 946  ENS---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNI 995
            E S          +  + E+  LG Y +GHP+  Y K I R  G    ++   T RG   
Sbjct: 937  EQSYGSVPPWPAQMVLDGERETLGLYLTGHPITQYLKEIERYAGGGRLKDMHPTDRGKMT 996

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +V+  +   T++G+RIG  T  + +   E   F
Sbjct: 997  TAVGLVLGARVMTTKRGNRIGMCTLDDRSGRLEVMLF 1033


>gi|253699799|ref|YP_003020988.1| DNA polymerase III subunit alpha [Geobacter sp. M21]
 gi|251774649|gb|ACT17230.1| DNA polymerase III, alpha subunit [Geobacter sp. M21]
          Length = 1155

 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1046 (39%), Positives = 632/1046 (60%), Gaps = 37/1046 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S +FVHL +HS YSLL+GA+ + ++L K+     PA+A+TD  N+F  LEF  K    GI
Sbjct: 3    SANFVHLHLHSQYSLLDGAIRIGDLLKKVKECHMPAVAMTDHGNMFGTLEFYLKCKDKGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-K 126
            +PIIG ++ I  Q  L +             ++LL     G++ L  LVS  Y   +G  
Sbjct: 63   KPIIGSEVYIAPQSRL-LKQAPAAGEANSYHLILLCENMTGFKNLSYLVSAGY--KEGFY 119

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT--FKKLFGDRLYV 184
            +  RI    L +   EGLI+L+    G +  A+    +++ E R     + + F    Y+
Sbjct: 120  RRPRIDKELLLK-HKEGLIVLSACLQGEV--AYLAGRNKMDEARAAASWYAENFPGSYYI 176

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ ++  ++     +++++A   +LPLVATN+  +L+ ED  AH++L+ +     +S  
Sbjct: 177  ELQENKLPEQDVANRRLMEIAREMDLPLVATNDCHYLNREDARAHEILLCIQTGKTMSDP 236

Query: 244  DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +R   + D  Y+K   EM + F   PEAL NTV+IA RC      +    P +   E + 
Sbjct: 237  NRMAFSVDEFYVKTPEEMAAAFHYAPEALSNTVKIAERCHLEFDFNTYYFPAYEAPEGET 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIA--------KGYHAQDYRQRLDFELNVIARMKFS 354
            + ++ E E +    AGL  RL +  I         +GYHA     RL  EL+ I +M F 
Sbjct: 297  LDQQLERESK----AGLIERLKKIRIKYNLTEEQEQGYHA-----RLRIELDCIKQMGFP 347

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIVADFI WAK + IPVGPGRGS AGS+ A+ + ITDIDP+ ++LLFERFLNP+R+S
Sbjct: 348  GYFLIVADFINWAKDHGIPVGPGRGSAAGSLVAFCIRITDIDPMPYNLLFERFLNPERIS 407

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD D+DFCQDRR+EVI+Y+  KYG E+V QIITFG++ A+  +RDVGRAL + + +VDR
Sbjct: 408  MPDIDVDFCQDRREEVIQYMVEKYGREKVCQIITFGTMAARGVIRDVGRALDLTFGEVDR 467

Query: 475  LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            + KL+P      ++L+ A+  + + +E   ADP V  ++ ++ +LEGL RHASTHAAG+V
Sbjct: 468  IAKLVPE--VLGITLEKALEQEPKLKELMAADPKVKEVMTVALRLEGLARHASTHAAGLV 525

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
            +  R + +  P+Y+D ++    TQ++MK++EK GL+KFDFLGLK LT++  +   +   +
Sbjct: 526  VAPRQMEEFCPVYKDQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIDNACKHIRNGK 585

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                D++L+  DD E+Y LL    T G+FQLESSGM++ L  ++P C EDIIA+ +LYRP
Sbjct: 586  DPNFDITLLRDDDAESYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRP 645

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+ + +V  +  RK+G+++ V   P ++P+LK+T GVI+YQEQVMQI++ L+GYSL  A
Sbjct: 646  GPLGSGMVDDFIERKHGRKQTVYDLPQLEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  E+M K++++F+ G+ K G+       IF+L+AKFA+YGFNKSH+AAYA
Sbjct: 706  DLLRRAMGKKDAEQMAKERDKFLEGSEKLGLDGKKCAAIFDLMAKFAEYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +++YQTA++K HYPVEF+AA +T +M N +K+ K   D R+  I+++PP +N     F+V
Sbjct: 766  LVAYQTAFLKAHYPVEFMAALLTEDMGNTDKVIKSIGDCREMGIEVLPPDINESDRSFRV 825

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             D  + + L A+K VG      I+EA  D+PF  L DFC RVD +++N+RV+E+L+  GA
Sbjct: 826  LDKAMRFGLGAVKNVGEGAIEAIIEARGDEPFKDLFDFCERVDLRRVNKRVIEALIKCGA 885

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVEN 947
             DC G  R QL+  L++     Q V++ R +   ++F   +   G       L      +
Sbjct: 886  FDCTGAKRSQLMAGLEDAAATGQRVQQERESAQASLFGAAEIVRGGNGGGNRLPDIPEWD 945

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
               R   E+  +GF+ +GHPLD Y   +R+         +       +R+  +  + ++ 
Sbjct: 946  EKYRLGCEKEAIGFFITGHPLDRYVADMRRFSTVDCSTILDAKEKGEVRICGVPSTVKEL 1005

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+KG R+ ++   +     E   FP
Sbjct: 1006 ITKKGDRMAFLALEDLVGSVEVVVFP 1031


>gi|161612604|ref|YP_001586569.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Paratyphi B str. SPB7]
 gi|161361968|gb|ABX65736.1| hypothetical protein SPAB_00295 [Salmonella enterica subsp. enterica
            serovar Paratyphi B str. SPB7]
          Length = 1144

 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1040 (41%), Positives = 621/1040 (59%), Gaps = 54/1040 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K A+   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVH--- 57

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 58   NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGLI+++GG  G + R     +  + E+ +  ++  F DR ++ L R  R  +       
Sbjct: 110  EGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIRTGRQDEETYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEALENTVEIA+RC+  +++    LP+F   +        E+ L  K+  GL
Sbjct: 230  MCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDYLVKKSKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   ++ +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLA-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953
             SL +  K A    K       ++F    G  ++    E   +E S          V  +
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935

Query: 954  NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             E+  LG Y +GHP++ Y K I R +G    ++   T RG     A +V++ +   T++G
Sbjct: 936  GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRG 995

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +RIG  T  + +   E   F
Sbjct: 996  NRIGICTLDDRSGRLEVMLF 1015


>gi|238751435|ref|ZP_04612927.1| DNA polymerase III subunit alpha [Yersinia rohdei ATCC 43380]
 gi|238710302|gb|EEQ02528.1| DNA polymerase III subunit alpha [Yersinia rohdei ATCC 43380]
          Length = 1171

 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1050 (41%), Positives = 621/1050 (59%), Gaps = 48/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  AG++
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGVK 74

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 75   PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDRLYVNLQ 187
              I   WL +   +GLI+L+GG  G + + F    +QV   + L F ++ F D  Y+ L 
Sbjct: 125  PIIDRDWLIK-HKDGLILLSGGRMGDVGK-FILRGNQVLVDQCLEFYQQHFPDSYYLELI 182

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R  +       V LA    LP+VATN+  F++E D++AH++ +A+     +    RP
Sbjct: 183  RTGRPDEENYLHAAVALATERGLPVVATNDVRFIAESDFDAHEIRVAIHDGFTLVDPKRP 242

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E      
Sbjct: 243  KNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEM----- 297

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVAD 362
              E+ L  K+  GLE RL          AQ    Y +RL+ EL VI +M F GYFLIV +
Sbjct: 298  STEDFLVEKSKQGLEERLELLFPDPEIRAQKRPAYDERLEIELKVINQMGFPGYFLIVME 357

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 358  FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDF 417

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P D
Sbjct: 418  CMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPD 477

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++  
Sbjct: 478  PGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 536

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
             P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     +D
Sbjct: 537  APLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPID 596

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ +
Sbjct: 597  IASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQS 656

Query: 658  IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  A
Sbjct: 657  GMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGA 716

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK   EM KQ+  F  GA   G++  +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 717  DMLRRAMGKKNPAEMAKQRSVFEDGAKNQGVNGELAIKIFDLVEKFAGYGFNKSHSAAYA 776

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V
Sbjct: 777  LVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV 836

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D+  I Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE L+ +
Sbjct: 837  NDDGEIVYGIGAIKGVGEGPIEAMLEARKEGGHFKELFDLCARVDTKKLNRRILEKLIMS 896

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN- 947
            GA D  G  R  L+ SL    K A    K       ++F    G  +D     + S  N 
Sbjct: 897  GAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQSYANV 952

Query: 948  ----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                  +  + E+  LG Y +GHP+  Y K I R  G    ++   T RG     A +V+
Sbjct: 953  PRWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVI 1012

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG  T  + +   E   F
Sbjct: 1013 ASRVMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|227114702|ref|ZP_03828358.1| DNA polymerase III subunit alpha [Pectobacterium carotovorum subsp.
            brasiliensis PBR1692]
          Length = 1160

 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1049 (41%), Positives = 617/1049 (58%), Gaps = 46/1049 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ K AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    ++  D L            +  + +L     GYQ L  L+S  Y    G   
Sbjct: 64   PIIGADFCVE-SDELG---------DELAHLTVLAMNNAGYQNLTLLISHAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+GG  G + R     +   AE+ L  +++ F  R Y+ L R
Sbjct: 114  PTIDRDWLVE-HQEGLILLSGGRRGDVGRFLLRGNQTQAEQCLAFYQEHFPQRYYLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA  H +P+VATN   F+S +D++AH++ +A+     +    RPR
Sbjct: 173  TSRPDEESYLHAAVELATKHGVPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L   +  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVQCSKKGLEERLEFLFPDPEVRAERRPEYDERLDIELGVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     +D+
Sbjct: 527  PLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKQGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   G++  +AV IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKNPVEMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+  I Y + AIKGVG      I+EA +    F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947
            A D  G  R  L+ SL +  K A    K       ++F    G  +D     + S     
Sbjct: 887  AFDRLGPHRAALMNSLPDALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQSYSTVP 942

Query: 948  ---SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP+  Y K I R       ++   T RG       +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPITQYIKEIERYASGVRLKDMHPTDRGKMTTAVGLVLA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLEIMLF 1031


>gi|91775600|ref|YP_545356.1| DNA polymerase III, alpha subunit [Methylobacillus flagellatus KT]
 gi|91709587|gb|ABE49515.1| DNA polymerase III, alpha subunit [Methylobacillus flagellatus KT]
          Length = 1149

 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/979 (43%), Positives = 615/979 (62%), Gaps = 37/979 (3%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           PSF+HL+ HS YS+++G + + + + +  ADQ PA+A+TD +NLF A++F + A   G++
Sbjct: 4   PSFIHLRCHSEYSVVDGTVRIGDYVKQAVADQMPALALTDLSNLFGAIKFYKAARGKGVK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           P+IG         ++ + N+ K   P    ++LL  +  GY RL EL+SR +L +Q +  
Sbjct: 64  PLIGA--------DIWLENESKRDQPY--RLLLLCHSHVGYLRLCELLSRAFLHNQYRGR 113

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I   WL+E GTEGLI+L+G  +G I +A    +   A+     +  LF  R Y+ LQR
Sbjct: 114 AEIKREWLREGGTEGLILLSGAMAGDIGQALLQGNFSQAQTLAGEWAALFPQRFYIELQR 173

Query: 189 --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   + Y  S +  LA   ELP+VAT+   F++ +D++AH+  + +A   V++   RP
Sbjct: 174 AGHPQQEAYIASALA-LASELELPVVATHPVQFMAPDDFKAHEARVCIAEGYVLADNRRP 232

Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           ++ TP+ Y K++++M  +F+D+PEAL N+VEIA+RC+  L +    LP+F     + +  
Sbjct: 233 KLFTPEQYFKSQAQMAELFADIPEALANSVEIAKRCNLTLTLGKNYLPQFPTPNGESL-- 290

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVAD 362
             +  L  +A AGLE RL      +G       +Y  RL FE N+I +M F GYFLIVAD
Sbjct: 291 --DEYLVAQAKAGLEERLKVLFPDEGQREAKRPEYEARLQFETNIIIQMGFPGYFLIVAD 348

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DP+R++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPMRYALLFERFLNPERVSMPDFDIDF 408

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           CQ+ RD VI YV+ KYG + V+QI TFG++ AKA +RDVGR L +P++ VD + KLIPN+
Sbjct: 409 CQEGRDRVIDYVKRKYGLDAVSQIATFGTMAAKAVIRDVGRVLDLPFTFVDSVAKLIPNE 468

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               +S +A+  + + +E R  +  V  LLE++ +LEGL R+   HA G++I    +S  
Sbjct: 469 LGISLS-EALEKEPQLKERREQEEEVAELLELALRLEGLTRNIGMHAGGVLISPGKISDF 527

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VD 597
            P+Y     +  V+Q++   +E  GL+KFDFLGL+TLT+L  +L+      A+ G++ +D
Sbjct: 528 SPVYCQASGESVVSQYDKDDVEAVGLVKFDFLGLRTLTILAMALESANLQRAEHGLEPLD 587

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
              +P DD  +Y LL    T  +FQLES GM+  L+  +PD  EDIIALV+LYRPGP+D 
Sbjct: 588 FETLPIDDKASYQLLKAANTTAVFQLESRGMKDMLKQAKPDVFEDIIALVALYRPGPMDL 647

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           I  +  RK+G +++   HP  +P+LKET G+++YQEQVMQIAQ+++GYSL  AD+LRRAM
Sbjct: 648 IPDFCRRKHGLQRVEYPHPATEPILKETYGIMVYQEQVMQIAQVVAGYSLGGADLLRRAM 707

Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
           GKK  EEM KQ+  FI GA KNG S+  A  +F+L+ KFA YGFNKSHAAAYA+++YQTA
Sbjct: 708 GKKKPEEMAKQRSIFIEGAVKNGTSEKQAGELFDLMEKFASYGFNKSHAAAYALVAYQTA 767

Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIY 836
           ++K HYP  FLAA+M+ +M+N + I  F  D     ++++PP +N     FK +   +I 
Sbjct: 768 YLKAHYPAAFLAATMSADMNNTDNIHLFYDDCIFNGLEVLPPDINASEYRFKPINAKQIL 827

Query: 837 YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
           Y L AIKG G      I+ A  +  PF  L DFCSR+D +K+NRRV+ESL+ AGA D   
Sbjct: 828 YGLGAIKGTGWAAIELILAARQEGGPFKDLFDFCSRLDLRKVNRRVIESLIRAGAFDKLE 887

Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFE 953
            +R  LL  +      A+  +    +  +++F    G+  D     L +        R +
Sbjct: 888 PNRAALLAGVSLAISAAE--QSGAASGQDSLF----GSVIDSAVHVLPETPPWTEKQRLQ 941

Query: 954 NEQRVLGFYFSGHPLDVYK 972
            E+  LGFYFSGHP   Y+
Sbjct: 942 EEKAALGFYFSGHPYADYQ 960


>gi|332140484|ref|YP_004426222.1| DNA polymerase III subunit alpha [Alteromonas macleodii str. 'Deep
            ecotype']
 gi|327550506|gb|AEA97224.1| DNA polymerase III subunit alpha [Alteromonas macleodii str. 'Deep
            ecotype']
          Length = 1154

 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1053 (41%), Positives = 616/1053 (58%), Gaps = 55/1053 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  F+HL+VHS +S+++G   +  IL K+AA + PA+AITD  N+   ++F  +A   GI
Sbjct: 2    SSPFIHLRVHSDFSMMDGLNKVKPILGKVAALEMPAVAITDQMNMCGLVKFYSEAHNLGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQ--GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            +PIIG         +  +TN+  G  PF     + LL    EGY+ +  L+S+ YL    
Sbjct: 62   KPIIGT--------DFWVTNEAFGDEPF----RLTLLAMNNEGYKNITILISKAYLRGHL 109

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I  +WL E   EG+I+L+G   G +      N++++ +  L  ++  F DR Y+ 
Sbjct: 110  AHRAVIDQAWLAE-HAEGVIILSGAQHGDVGVGLMKNNAKLLDSALAFYESYFPDRFYLE 168

Query: 186  LQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            L R   +G + Y     V+LA    LP+VATN   F+  E +EAH++ + +     +   
Sbjct: 169  LIRTGRQGEEDYLH-HAVELAEQRGLPVVATNEVCFIDREGFEAHEIRVCIHDGYTLDDN 227

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP R +   YL+   EMV +FSD+PEA+ENTVEIA+RC+  ++++   LP+F       
Sbjct: 228  RRPKRYSEQQYLRTSEEMVELFSDIPEAIENTVEIAKRCNVTVRLNEYFLPQFPTG---- 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L   +  GLE RL         +     +Y  RL  EL VI +M F GYFLI
Sbjct: 284  -GMTTEDFLVKVSEEGLEERLEFLFPDEEVRKAKRPEYDDRLRIELEVINQMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 343  VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 403  VDFCMDRRDEVIDHVAELYGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLI 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   +D  V  L+++++ LEG+ R+A  HA G+VI    +
Sbjct: 463  PPDPGMTLE-KAFKAEPQLPEVYESDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPTTI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++Q ++D + + + V VD+
Sbjct: 522  TDFSPLYCDDEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKEGKNVDVDI 581

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S IP +D +++  L    T  +FQLES GM++ ++ ++PDC EDIIALV+L+RPGP+ + 
Sbjct: 582  SAIPLEDPKSFRTLQNAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSG 641

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  +  +L+ T G+I+YQEQVMQIAQ ++GYSL  AD
Sbjct: 642  MVDNFIDRKHGREEISYPDAEYQHECLQEILEPTYGIILYQEQVMQIAQEMAGYSLGGAD 701

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA  N I   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 702  LLRRAMGKKKPEEMAKQRGTFAEGAKGNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYAL 761

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQT W+K HYP EF+AA M+ +MDN +KI     +  +  I+I+PP +N     F V 
Sbjct: 762  VSYQTLWLKVHYPAEFMAAVMSADMDNTDKIVTLVDECERMGIEILPPDLNAGKYKFTVD 821

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
               RI Y + AIKGVG      I+EA      F  L DFC++VD K++N+RVLE LV AG
Sbjct: 822  SKGRIVYGIGAIKGVGEGPIEAIIEAREIQGAFKDLFDFCAKVDIKRVNKRVLEKLVLAG 881

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A+D  G  R  L+ +L      A    K  +    ++F          +T E   V+ + 
Sbjct: 882  AMDNLGPHRATLMATLPEALAAAGQHAKAESFGQSDMFG--------LLTTEPEEVQQAF 933

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                     V  E E+  LG Y +GHP++ Y   LR        +   T +        +
Sbjct: 934  ADVPEWPEKVWLEGEKDTLGLYLTGHPINQYADELRYYTDGRLVDLKPTNKDQLASAVGL 993

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V+  +    ++G R   VT  + +   +  FFP
Sbjct: 994  VLGVRVMTNKRGRRWAIVTLDDKSARMDVRFFP 1026


>gi|302037892|ref|YP_003798214.1| DNA polymerase III subunit alpha [Candidatus Nitrospira defluvii]
 gi|300605956|emb|CBK42289.1| DNA polymerase III, alpha subunit [Candidatus Nitrospira defluvii]
          Length = 1150

 Score =  769 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1037 (41%), Positives = 630/1037 (60%), Gaps = 30/1037 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSLL+GA  ++ ++ ++ +  QPA+A+TD  N+F A+EF +KA  AG++PI
Sbjct: 5    FVHLHLHTQYSLLDGANQIDPLMQQVKSFGQPAVAMTDHGNMFGAVEFYRKAKEAGVKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC+    M    ++             ++LL +  +GYQ LI+LVS+ YL +      R
Sbjct: 65   IGCE--AYMAPGSRLEKNSHLAHNDYYHLILLATNLKGYQNLIKLVSKAYL-EGFYYKPR 121

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA--EKRLLTFKKLFG-DRLYVNLQ 187
            +    LQ+   EGLI L+G  SG +  A+      +A   K    ++++FG D  Y+ LQ
Sbjct: 122  MDKEILQQ-HHEGLIGLSGCLSGEV--AYLIGQKDLAGATKAAGEYREIFGKDNYYLELQ 178

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   + R     ++++    ++PL  TN+  +L +ED   HD+++ +     ++  +R 
Sbjct: 179  ANGLEHQRIANDGLLEIHKKLDIPLAGTNDCHYLKKEDSRPHDLMLCLQTGKTINDPNRM 238

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +   D  Y+K+  + +S F ++P A+ NTV+IA  C+  L ++   LP+F   E      
Sbjct: 239  KFDTDQLYVKSTEQALSEFKEMPTAVSNTVKIAEACTLDLALNKTYLPQFKVPEG----Y 294

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E+ +   A+ GL  RL +   +    A  Y+ RL  E+ VI  M F+GYFLIV D I+
Sbjct: 295  TRESYVEQLALEGLAARLKERPSSIPEIA--YQVRLKEEVAVICSMGFAGYFLIVWDIIK 352

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   IPVGPGRGS AGS+ AYAL ITD+DPL +SLLFERFLNP+R+S+PD D+DFC D
Sbjct: 353  FARSRGIPVGPGRGSAAGSLVAYALRITDLDPLVYSLLFERFLNPERVSLPDIDMDFCMD 412

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI YV +KYG + VAQIITFG+++AKAA+RDVGR L+MPY++VDR+ KL+P+D   
Sbjct: 413  RRDEVINYVIHKYGEDHVAQIITFGTMKAKAAIRDVGRVLEMPYAEVDRIAKLVPDDLKM 472

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+  + R +E    D  V  L+ ++Q LEGL RHASTHAAGIVI D+PL++ VP+
Sbjct: 473  TLD-KALEQEPRLKELVDKDVKVKELMSVAQSLEGLARHASTHAAGIVISDQPLTEHVPL 531

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-----LSL 600
            Y+  + ++ VTQ++M  +EK GL+KFDFLGLKTLT++ ++   + +  V  D     +  
Sbjct: 532  YKGPKDEI-VTQYSMGDVEKIGLVKFDFLGLKTLTMIHRAETLVNE--VHPDQPPLRVEQ 588

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +PFDD +T+ LL++  T G+FQLESSGMR  L G++PD  EDIIA+++LYRPGP+D I  
Sbjct: 589  LPFDDPDTFALLSSGKTTGVFQLESSGMRDLLMGLKPDRFEDIIAIIALYRPGPMDLIPD 648

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RK GK  I    P ++P+LK+T GVI+YQEQVM IA  ++G+SL +AD+LRRAMGKK
Sbjct: 649  FIKRKQGKIPIAYEMPELEPILKDTYGVIVYQEQVMAIANKVAGFSLGQADILRRAMGKK 708

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM+K + +F+ GA +  IS+  A  ++EL+ KFA YGFNKSHAAAYAV+ YQTA++K
Sbjct: 709  KPEEMEKLRVQFLEGAKQKKISEKKADKLYELIQKFAGYGFNKSHAAAYAVVCYQTAYLK 768

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYP EF+AA MT +M N +KI  +  + R   I ++PP VN    +F V D  I + LA
Sbjct: 769  AHYPTEFMAALMTTDMGNADKIVGYFTECRGLGIPVLPPDVNQSQKNFAVVDQSIRFGLA 828

Query: 841  AIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AIK VG      I+E   +  PF S  D   RVD +KLN+R++E L+ AGA D  G  R 
Sbjct: 829  AIKNVGEGAVEAIIEVRNETGPFRSFFDLFRRVDLRKLNKRMMEGLIKAGAFDSMGGRRS 888

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS---DKITLEKFSVENSSVRFENEQ 956
            Q L  LD        ++K R     +IF  +        D+  L      N     + E+
Sbjct: 889  QYLAVLDQAMDEGMSIQKERALGQTSIFGDDTVGMPQQLDEPALPDVPEWNQGELLKYER 948

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             + GFY S HPL  Y+  ++        +      G  ++L  ++ + +   T+KG R+ 
Sbjct: 949  ELTGFYISAHPLARYEAAIQLFANTTTMQIPDVPDGREVKLCGIITAVKSMLTKKGDRMA 1008

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++T  +     E   FP
Sbjct: 1009 YITLEDLHGLVEVIAFP 1025


>gi|238787220|ref|ZP_04631019.1| DNA polymerase III subunit alpha [Yersinia frederiksenii ATCC 33641]
 gi|238724482|gb|EEQ16123.1| DNA polymerase III subunit alpha [Yersinia frederiksenii ATCC 33641]
          Length = 1160

 Score =  769 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1050 (41%), Positives = 620/1050 (59%), Gaps = 48/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A +AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 64   PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDRLYVNLQ 187
              I   WL     EGLI+L+GG  G + + F    +QV   + L F ++ F +  Y+ L 
Sbjct: 114  PIIDRDWLIN-HKEGLILLSGGRMGDVGK-FILRGNQVQVDQCLEFYQEHFPNSYYLELI 171

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R  +       V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP
Sbjct: 172  RTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRP 231

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +      
Sbjct: 232  KNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM----- 286

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+ L  K+  GLE RL          AQ   +Y +RL+ EL VI +M F GYFLIV +
Sbjct: 287  STEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPEYDERLEIELKVINQMGFPGYFLIVME 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P D
Sbjct: 407  CMEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPD 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++  
Sbjct: 467  PGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
             P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     +D
Sbjct: 526  APLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPID 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ +
Sbjct: 586  IASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQS 645

Query: 658  IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  A
Sbjct: 646  GMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DMLRRAMGKKNPAEMAKQRSVFEDGAKSQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V
Sbjct: 766  LVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHV 825

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D+  I Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE L+ +
Sbjct: 826  NDDGEIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMS 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN- 947
            GA D  G  R  L+ SL    K A    K       ++F    G  +D     + S  N 
Sbjct: 886  GAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQSYANV 941

Query: 948  ----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                  +  + E+  LG Y +GHP+  Y K I R  G    ++   T RG     A +V+
Sbjct: 942  PPWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVI 1001

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG  T  + +   E   F
Sbjct: 1002 AARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|330936801|gb|EGH40958.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. pisi str.
            1704B]
          Length = 1173

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1067 (39%), Positives = 625/1067 (58%), Gaps = 69/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173  NRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHN 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMTELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA        + Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDVGR     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVGRVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             +V  + NRK+G+ ++   +P +D       P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 648  GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V D+ RI Y L AIKGVG      I +A  D PF  L DFC+RVD K++N+R L+ L+ 
Sbjct: 826  TVSDDGRILYGLGAIKGVGEGPVEAITDARQDGPFKDLFDFCARVDLKRVNKRTLDGLIR 885

Query: 888  AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929
            +GALD  G                +R  LL +L+   + A+   ++R + H ++F     
Sbjct: 886  SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFV 945

Query: 930  --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              +   +++     + S+++   R   E+  LG Y +GHP+D Y+  +R+       + +
Sbjct: 946  EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998

Query: 988  ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++   +   +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 999  IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|262276512|ref|ZP_06054321.1| DNA polymerase III alpha subunit [Grimontia hollisae CIP 101886]
 gi|262220320|gb|EEY71636.1| DNA polymerase III alpha subunit [Grimontia hollisae CIP 101886]
          Length = 1159

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1056 (40%), Positives = 627/1056 (59%), Gaps = 61/1056 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A ++G++
Sbjct: 4    PRFIHLRVHSDFSMVDGLGKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYNTAQSSGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  MQ +        T    +  I +L +   GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGA--DFKMQTD--------TFGDDLCQITVLAANNAGYKNLTLLISKAYLRGHIQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I + WL E+  +GLI+L+GG +G + +A    +  +A +    +++ F D  Y+ L R
Sbjct: 114  PVIDIQWLAEL-KDGLIILSGGKNGDVGKALLKGNMALAAQCAAFYQQHFPDAYYIELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+ A    LP+VATN   FL+ + ++AH++ +A+     +    RP+
Sbjct: 173  TGRADEEAYLHFAVEFAEEQGLPVVATNEVCFLTPDLFDAHEIRVAIHDGYTLEDPRRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL++  EM  +F D+PEAL NTVEIA+RC+  ++++   LP F  +       E
Sbjct: 233  NYSPQQYLRSEEEMCELFQDIPEALANTVEIAKRCNVTVRLNEYFLPNFPTEGM-----E 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  IGEFLIKKSKEGLEERLEFLFPDPEVRAEKRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MDKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E   AD  V  L++  + LEG  R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLAELYEADEEVRELIDTCRILEGCTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V +
Sbjct: 527  PLYCDSEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALSMINPRLEKMGQAPVRI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I  DD  ++ LL    T  +FQLES GM++ ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  DAIKMDDQASFRLLQNAETTAVFQLESRGMKELIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +V N  +RK+G+E +          S+  ++DP    T G+I+YQEQVMQIAQ+L+GYSL
Sbjct: 647  MVDNFIDRKHGREAVSYPDEKWQHESLKEILDP----TYGIILYQEQVMQIAQVLAGYSL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRATFEQGAIKNGVDGELAMRIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT +MDN +KI    ++ R+  + I+PP VN     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVGLVEECRRMKLTILPPDVNAGLYR 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + AIKGVG     +I++A  +   F  L DFC+R+D+KK+N+RV+E L
Sbjct: 823  FNVNEKGEIVYGIGAIKGVGEAPIENIIKAREEGGYFRDLFDFCARIDTKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + +GA+D  G  R  ++ SLD+  K A        ++H    A  +      +T     V
Sbjct: 883  IQSGAMDRLGPHRAAMMASLDDALKSA--------SQHHQAEAFGQTDMFGVLTAAPEEV 934

Query: 946  EN---------SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            E+           V  E E+  LG Y +GHP++ Y   L+       E++ AT R     
Sbjct: 935  EHKYTKVPPWPDKVWLEGERETLGLYLTGHPINSYVKELKHYITWRLEDAHATKRDVVST 994

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +A +V++ +   T++G+RIG +T  + +   E   F
Sbjct: 995  VAGLVIAARVMTTKRGTRIGILTLDDRSGRMEVMLF 1030


>gi|301155192|emb|CBW14656.1| DNA polymerase III alpha subunit [Haemophilus parainfluenzae T3T1]
          Length = 1159

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1057 (40%), Positives = 628/1057 (59%), Gaps = 56/1057 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++G + +  ++   AA+   A+A+TD  N    + F  +  +
Sbjct: 1    MSTQPRFVHLRTHTDFSMIDGIVKVKPLVKACAANNMVALALTDFTNFCGVVRFYGETLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PIIG   D+ ++  L     G+  F    ++ LL    EGY+ +  L+S+ Y   +
Sbjct: 61   SGIKPIIGA--DVHVKSEL----CGEELF----TLTLLAKNNEGYKNITLLLSKAY--QR 108

Query: 125  GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            G   +  I   WL E   EG+I+L+GG+ G I +     +S  AE  +  +++ F D  Y
Sbjct: 109  GYVDLPYIDQEWLIE-HREGVIVLSGGTQGDIAKKLLKENSFEAESAVSFYQEFFPDHFY 167

Query: 184  VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            ++L R    D  R  Q  ++LA  H+LPLVATN+ +FL+ +D+EAH++ +A+     +  
Sbjct: 168  LSLSRTGRPDEERYIQAALKLAEAHDLPLVATNDVVFLAPDDFEAHEIRVAIHDGYTLDD 227

Query: 243  KDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RP R T   Y ++  EM  +FSD+P ALENTV IA+RC+  L++    LP+F   +  
Sbjct: 228  PKRPKRYTEQQYFRSEEEMCDLFSDIPSALENTVLIAQRCNVTLRLGEYFLPKFPTGDL- 286

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L  K+  GLE RLA        +     +Y +RL  EL+VI +M F GYFL
Sbjct: 287  ----STEDYLVMKSKEGLEERLAFLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ K+
Sbjct: 403  DVDFCMDGRDRVIDHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKM 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   ++ +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    
Sbjct: 463  IPPDPGMTLA-KAFEAEPQLQTAYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSL 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595
            ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R  +   
Sbjct: 522  ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLTREGK 581

Query: 596  --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPG
Sbjct: 582  PLVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641

Query: 654  PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+
Sbjct: 642  PLQSGMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYT 701

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+
Sbjct: 702  LGGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N    
Sbjct: 762  AAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINVGKH 821

Query: 827  DFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884
             F V +N  I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ES
Sbjct: 822  HFSVNENGEIVYGIGAIKGVGEGPIDALITARNEGGIFRDLFDLCARVDLKKINRRTFES 881

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ +GA D  G  R  L ++L++  K +    K+      ++F          +T     
Sbjct: 882  LIMSGAFDKLGPHRAALSKNLEDALKASDQHAKDEAMGQTDMFG--------VLTETHEE 933

Query: 945  VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
            VEN+             + E+  LG Y S HP+  Y   L        ++     RG   
Sbjct: 934  VENAYAHTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYSSTRLKDLTPNRRGQIS 993

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +A ++VS +   T+KG+RIG  T  + +   +   F
Sbjct: 994  TVAGLLVSTRFATTKKGNRIGIATIDDRSGRLDLTLF 1030


>gi|170718818|ref|YP_001783421.1| DNA polymerase III subunit alpha [Haemophilus somnus 2336]
 gi|168826947|gb|ACA32318.1| DNA polymerase III, alpha subunit [Haemophilus somnus 2336]
          Length = 1158

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1046 (41%), Positives = 623/1046 (59%), Gaps = 42/1046 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S++ G   +  ++      +  A+A+TD  N    + F  +A ++G++
Sbjct: 4    PRFVHLRVHSDFSMINGITKVKPLIKACVQHEMVAMALTDFTNFCGLVRFYGEAQSSGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D+ ++ +L     G   F     + LL    EGY  +  L+S+ Y  ++G  +
Sbjct: 64   PIIGA--DVLVKSDL----LGDELF----ELTLLAKNNEGYHNITLLLSKAY--ERGYYN 111

Query: 129  V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            +  I  SWL E   EG+I+L+GG +G + +    N+S   E  +  +++ F D  Y++L 
Sbjct: 112  LPYIDQSWLAE-HHEGIIILSGGRNGDVGKKLLKNNSADVETAVAFYQEYFPDHFYLSLS 170

Query: 188  R--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      DRY +S ++ LA   +LPLVATN+  FLS ED+EAH++ +A+     +    R
Sbjct: 171  RTGRSDEDRYIQSALI-LAQQKQLPLVATNDVCFLSPEDFEAHEIRVAIHDGYTLDDPKR 229

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P++ +   Y ++  EM  +F+D+P ALENTV IA+RC+  +++    LP+F   +     
Sbjct: 230  PKLYSSQQYFRSEQEMCELFADIPTALENTVLIAQRCNVTIRLGTYFLPKFPTGDL---- 285

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +    ++Y  RL  EL+VI +M F GYFLIV 
Sbjct: 286  -SPEDFLIQKSKEGLEERLQTLFPDPQVRSEKRKEYDDRLQTELDVINKMGFPGYFLIVM 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 345  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 405  FCMDKRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLIPA 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   ++ +A   + R  E    D  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 465  DPGMTLT-KAFEAEPRLSEIYNNDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLITD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R VK     V
Sbjct: 524  FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLVKEGKSAV 583

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+S IP +D ++++LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP++
Sbjct: 584  DISTIPLNDPDSFNLLKKAETTAVFQLESRGMKDLIKKLQPDCFEDIIALVALFRPGPLE 643

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G E +        H  + P+L+ T GVI+YQEQVMQIAQ+L+GYSL  
Sbjct: 644  SGMVQNFIDRKHGVEPVSYPDVKYQHESLKPILEPTYGVIVYQEQVMQIAQVLAGYSLGG 703

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM  Q++ F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 704  ADLLRRAMGKKKPEEMAAQRDIFEKGAIAKGIDGDLAMKIFDLVEKFAGYGFNKSHSAAY 763

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT EMDN +KI  F  +  +  + I+PP +NT    F 
Sbjct: 764  ALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVSFYDECLRMGLTIVPPDINTGKHHFS 823

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+ A      F  L D C+RVD K++NRR  E+L+ 
Sbjct: 824  VNDNGEIVYGIGAIKGVGEVPINAIVSAREQGGIFKDLFDLCARVDLKQINRRTFENLIK 883

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            +GA D  G  R  L Q+L++  K +    K+      ++F     +  D  T    +   
Sbjct: 884  SGAFDKLGPHRAALAQNLEDALKASDQHAKDEAIGQVDMFGVLTSSHEDVETAYAHTPRW 943

Query: 948  SSVR-FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            S  +  + E+  LG Y S HP+  Y   L         E     RG    +  ++V+ + 
Sbjct: 944  SEKQILDGERETLGLYLSSHPITRYLKELSHYSSTRLNELSPNTRGKISTVCGLIVALRF 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+KG+R+G  T  + +   +   F
Sbjct: 1004 AVTKKGNRLGIATLDDRSGLLDITLF 1029


>gi|197334671|ref|YP_002156775.1| DNA polymerase III subunit alpha [Vibrio fischeri MJ11]
 gi|197316161|gb|ACH65608.1| DNA polymerase III subunit alpha [Vibrio fischeri MJ11]
          Length = 1159

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1054 (40%), Positives = 625/1054 (59%), Gaps = 57/1054 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+++G   +  ++  +     PA+A+TD  NL   +++   A  AGI+
Sbjct: 4    PKFVHLRVHSDFSMVDGLSKVPPLVKNVGELGMPAMALTDFTNLCGLVKYYFAAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +  Q+       G   F    ++ +L    EGY+ L  L+S  Y     + +
Sbjct: 64   PIIGADFKVQSQEF------GNELF----NLTVLAKDNEGYKNLTLLISEAYQRGHVQHT 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   WL     EGLI+L+GG SG + +A    + ++  + +  ++  F +  Y+ L R
Sbjct: 114  PVMDKEWLVN-HKEGLILLSGGKSGDVGKALLKGNKELVNECVEFYQTHFPEHYYLELTR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   V+LA    LP+VATN+  F+  +D++AH++ +A+     +    R
Sbjct: 173  TGRADE--ESYLHFAVELAEKENLPVVATNDVRFIKADDFDAHEIRVAIHDGFTLEDPRR 230

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P++  D  YL++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKLYSDQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTEGM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + E+ L  K+  GLE RLA        +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 287  -KIEDFLVKKSQEGLERRLAFLFPDEKVRLERRPEYDERLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID
Sbjct: 346  EFIQWSKDNAIPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDID 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P+
Sbjct: 406  FCMDKRDQVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPS 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   ++ +A   + +  E   AD  V  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLA-KAFEAEPQLPELYNADEEVKALIDMCRILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V
Sbjct: 525  FAPLYCDADGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLEKEGKDPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  +++LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIESIPLDDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E++        H  +   L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 645  SGMVDNFIDRKHGREEVSYPDATWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRGTFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN +KI     +  +  + ++PP VN+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTDKIIGLVDECFRMKLTVLPPDVNSGLYRFN 824

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V +   I Y + AIKGVG     +I+EA +    F  L DFC+R+D+KK N+RV+E L+ 
Sbjct: 825  VDEKGAIVYGIGAIKGVGEGPIENIIEARNKGGHFKDLFDFCARIDTKKTNKRVVEKLIR 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGALD  G  R  L+ SLD+  K A    +  +    ++F          +T     VE 
Sbjct: 885  AGALDRLGPHRAALMASLDDAMKAAGQHHQAESFGQSDMFG--------VLTQAPEEVEQ 936

Query: 948  S---------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
            +          V  E E+  LG Y +GHP++ Y   L +       ++  T R   + +A
Sbjct: 937  AYIHVPKWPEKVWLEGERETLGLYLTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVA 996

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +V++ +   T++G+RIG +T  + +   E   F
Sbjct: 997  GLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|54293935|ref|YP_126350.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Lens]
 gi|53753767|emb|CAH15225.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Lens]
          Length = 1148

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1047 (41%), Positives = 641/1047 (61%), Gaps = 53/1047 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VH+ +SL++G + +  ++  + A     +A+TD  NLF+A++  + A  AGI+PI
Sbjct: 5    FVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKPI 64

Query: 71   IGCQL---DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IG  L   D++  D             T+ S+VLL     GY+ L  LVS+ Y   Q   
Sbjct: 65   IGSDLPCHDLEAPD-------------TIFSLVLLCQDTTGYKNLTCLVSKAYQEGQYHG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+ L W+ E  ++GLI L+GG  G I +A   N   +A KR L +  LF +R Y+ +Q
Sbjct: 112  QPRVQLQWIPEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQ 170

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            R  R  + +   +++ LA   +LPLVATN+  F+ E+D++AH+  + +     ++   R 
Sbjct: 171  RTGRADELHYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRV 230

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + +   YL++  EM  +FSDLP AL+NTVEI++RC+  L++    LP F   +   +  
Sbjct: 231  QQYSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDGTTV-- 288

Query: 306  EEENELRNKAVAGLEVRLAQ-------GAI--AKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E  L + +  GLE RL Q       G +  A+G    +Y +RL  EL VI  M F+GY
Sbjct: 289  --EAYLSHLSEIGLEERLKQLFRDKSEGELLAARG----EYDKRLKIELAVINNMGFAGY 342

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMP
Sbjct: 343  FLIVADFIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMP 402

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC + RD VI YV  KYG + V+QIITFG++ AKA +RDVGR L  PY  VD+L 
Sbjct: 403  DFDIDFCMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLA 462

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP +    +S +A+  +   R     +  V  L +++ KLEG+ R+A  HA G+VI  
Sbjct: 463  KLIPFELGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAP 521

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592
              L+    +Y +  S   V+QF+   +E  GL+KFDFLGL+TLT++  +L  + ++    
Sbjct: 522  SQLTDFTAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENA 581

Query: 593  GVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            G+  +D+S IP  D  T+ LL    T  +FQLES GM++ +  +QPDC EDIIALV+L+R
Sbjct: 582  GLSPIDISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFR 641

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+ + +V  + +RK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L  
Sbjct: 642  PGPLQSGMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGA 701

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+E F  GA   G+ + +A +IF+L+ KFA YGFNKSH+AAY
Sbjct: 702  ADLLRRAMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAY 761

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+++YQTAW+K HYP  F+AA M+ +MDN +K+  F  +     +Q++PPS+N     F 
Sbjct: 762  ALVAYQTAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFT 821

Query: 830  VGDNR-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D + I Y L AIKGVG +    I+ E + + PF  L  FC R+D +K+NRRV+E+L+ 
Sbjct: 822  VSDEKTIIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIK 881

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            +GA D +   R  L  SL+   K A+   +N+++   ++F+  +    ++  +E  S   
Sbjct: 882  SGAFDVWKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDKADEQNYVESKSWSE 941

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVSKQ 1005
            +  R E E+ VLGFY +GHP D Y+   R++G  I    +   ++    I + A VV+ +
Sbjct: 942  AQ-RLEGEREVLGFYLTGHPADQYR---RELGDFIVPVGQLNPSLHKKAI-ICAQVVAIR 996

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T++G ++  +   +     +A  F
Sbjct: 997  KIITKRGKKLVIIGMDDATARIDAVVF 1023


>gi|322831603|ref|YP_004211630.1| DNA polymerase III, subunit alpha [Rahnella sp. Y9602]
 gi|321166804|gb|ADW72503.1| DNA polymerase III, alpha subunit [Rahnella sp. Y9602]
          Length = 1160

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1050 (41%), Positives = 619/1050 (58%), Gaps = 48/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G   +  ++   A+   PA+AITD  NL   ++F   A  AG++
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKVGPLVKCAASLGMPALAITDFTNLCGLVKFYGAAHGAGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG  L++          Q +     +  + +L    +GYQ L  L+SR Y    G   
Sbjct: 64   PIIGADLNV----------QSEILGDELAQLTVLAMNNQGYQNLTLLISRAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDRLYVNLQ 187
              + L WL E+  EGLI+L+G   G + + F    + +   + L F ++ F DR Y+ L 
Sbjct: 114  PIVDLEWLAEL-NEGLILLSGARMGDVGK-FLTRGNDLQVSQCLDFYQQYFPDRYYLELI 171

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R  +       V LA    LP+VATN+  F+   D++AH++ +A+     +    RP
Sbjct: 172  RTGRAEEENYLHAAVALATERGLPVVATNDVRFMVPTDFDAHEIRVAIHDGFTLDDPKRP 231

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  T   Y+++  EM  +F DLPEAL+N+VEIA+RC+  +++    LP+F   +      
Sbjct: 232  RNYTSQQYMRSEDEMCELFEDLPEALQNSVEIAKRCNVTIRLGEYFLPQFPTGDM----- 286

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+ L  K+  GLE RL          AQ   +Y +RLD EL VI +M F GYFLIV +
Sbjct: 287  TTEDFLVEKSKIGLEERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVME 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FIQWSKDNSVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C ++RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P D
Sbjct: 407  CMEKRDRVIDHVSEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPD 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A A + +  E   AD  V  L++++++LEG+ R+A  HA G+VI    ++  
Sbjct: 467  PGMTLE-KAFAAEPQLPEIYEADEEVKSLIDMARQLEGVTRNAGKHAGGVVIAPTKITDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
             P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     +D
Sbjct: 526  APLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKAGEAPLD 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD +++ +L    T  +FQLES GM+  ++ ++PD  ED+IALV+L+RPGP+ +
Sbjct: 586  IAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDSFEDMIALVALFRPGPLQS 645

Query: 658  IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL  A
Sbjct: 646  GMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DMLRRAMGKKNPVEMAKQRGGFEEGAKSRGIDGELAIKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V
Sbjct: 766  LVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV 825

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D   I Y + AIKGVG      I+EA  +   F  L D C+R D KKLN+R+LE L+ +
Sbjct: 826  NDEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFKELFDLCARADVKKLNKRILEKLIMS 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN- 947
            GA D  G  R  L+ SL +  K A    K       ++F    G  ++     + S  N 
Sbjct: 886  GAFDRLGPHRAALMSSLSDALKAADQHAKAEAIGQVDMF----GVLAEAPEQVEKSYANV 941

Query: 948  ----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                     + E+  LG Y +GHP+  Y K I R  G +  ++   T RG       +V+
Sbjct: 942  MPWPEQTVLDGERETLGLYLTGHPITQYLKEIERYGGGQRLKDMHPTERGKMTVAVGLVL 1001

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG  T  + +   E   F
Sbjct: 1002 AARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|77360939|ref|YP_340514.1| DNA polymerase III subunit alpha [Pseudoalteromonas haloplanktis
            TAC125]
 gi|76875850|emb|CAI87071.1| DNA polymerase III, alpha subunit; the entire polymerase contains 10
            subunits [Pseudoalteromonas haloplanktis TAC125]
          Length = 1163

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1060 (41%), Positives = 614/1060 (57%), Gaps = 62/1060 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS +S+++G      I+ K    Q PAIAITD  NL   + F + A + GI
Sbjct: 3    APDFVHLRVHSDFSMVDGLAKTKPIVAKAQELQMPAIAITDQMNLCGLVRFYETAHSTGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTP-FPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQG 125
            +PI+G    +            ++P F   PS I +L    +GY+ L  L+S+ Y     
Sbjct: 63   KPIVGADFWL------------RSPEFENEPSRITILAKDNQGYKNLTLLISKAYQRGHV 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   WL E+   GLI+L+G   G + +A   N+  V E  +  +K+ F D  Y+ 
Sbjct: 111  FHRPVIDRDWLIELKA-GLIILSGAKDGDLGKALLKNNPSVIESVVSFYKQHFSDNYYLE 169

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R +R  +       V+LA   +LP+VATN  +FL  E++EAH++ +A+     +  K 
Sbjct: 170  LVRTNRPLEEDYLHMAVELAAKEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDKR 229

Query: 245  RP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP R + + YLK   +M  +FSD+PEAL+NTVEIA+RC+  +Q+    LP +        
Sbjct: 230  RPKRFSEEQYLKTPEQMAELFSDIPEALQNTVEIAKRCNVTVQLGTYFLPDYPTGSL--- 286

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              + E+ L   +  GLE RL         +     +Y +RLD EL VI  M F GYFLIV
Sbjct: 287  --KIEDFLVKVSQDGLEERLQFLFPDEQERKEKRVEYDERLDIELGVINEMGFPGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 345  MEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERISMPDFDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC DRRDEVI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ K+IP
Sbjct: 405  DFCMDRRDEVIDHVSALYGRNAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMIP 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   ++ +A   + R +EA   D  V  L+++ + LEG  R+A  HA G+VI    ++
Sbjct: 465  GDPGMTLA-KAFDIEPRLQEAYDGDNEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTIT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
                +Y D     PVTQF+   +E AGL+KFDFLGL+TLT+LQ +LD   +R  +     
Sbjct: 524  DFAALYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWALDMTNERLARTGKEP 583

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD++ IP DD ++  LL    T  +FQLES GM+  +  ++PD  ED+IALV+L+RPGP+
Sbjct: 584  VDINTIPLDDKKSIELLLRAETTAVFQLESRGMKDLVRRLKPDSFEDMIALVALFRPGPL 643

Query: 656  DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V N  +RK G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L 
Sbjct: 644  QSGMVDNFIDRKLGREEISYPDAQYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLG 703

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  F  GA  NGI   +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 704  GADMLRRAMGKKKPEEMAKQRSTFEDGARNNGIDGELAIKIFDLVEKFAGYGFNKSHSAA 763

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT WMKTH+P EF+AA M+ +MDN +KI     +     + ++PP VN     F
Sbjct: 764  YALVSYQTLWMKTHHPAEFMAAVMSADMDNTDKIVILVDECENMKLTLLPPDVNAGEFKF 823

Query: 829  KVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V     I Y + AIKGVG      I+EA A   PF  L DFC+RVD K+LN+RV E L+
Sbjct: 824  TVNLQGEIVYGIGAIKGVGEAPVEAILEARAKGGPFKDLFDFCARVDLKRLNKRVTEKLI 883

Query: 887  FAGALDCFGYSRMQ-----LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            ++GALD  G  + Q     LL SL +  + A    K       ++F          +  E
Sbjct: 884  YSGALDQLGPEKTQSGRATLLASLKSAMRAADQHNKAELLGQSDLFGL--------LATE 935

Query: 942  KFSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               VE + ++          + E+  LG Y +GHP++ Y+  L+        +   T R 
Sbjct: 936  PDEVEQAFIKATGLTDNEWLDGEKETLGLYLTGHPINQYRRELKYYTSGKLVDLQPTNRD 995

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 A +V+S +    +KG+R   +T  + +   +   +
Sbjct: 996  VVSTAAGLVISARVLINKKGNRWALITLDDKSARIDVRLY 1035


>gi|123443470|ref|YP_001007443.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp.
            enterocolitica 8081]
 gi|122090431|emb|CAL13299.1| DNA polymerase III, alpha chain [Yersinia enterocolitica subsp.
            enterocolitica 8081]
          Length = 1171

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1049 (40%), Positives = 618/1049 (58%), Gaps = 46/1049 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A +AG++
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHSAGVK 74

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 75   PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   EGLI+L+GG  G + +     +    ++ L  +++ F D  Y+ L R
Sbjct: 125  PIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHAQVDQCLEFYQEHFPDSYYLELIR 183

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP+
Sbjct: 184  TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 243

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 244  NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 298

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL          AQ    Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 299  TEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLIVMEF 358

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 359  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 418

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 419  MEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 478

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 479  GMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 537

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     +D+
Sbjct: 538  PLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDI 597

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 598  ASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 657

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD
Sbjct: 658  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 717

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 718  MLRRAMGKKNPAEMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 777

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 778  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 837

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE L+ +G
Sbjct: 838  DEGEIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSG 897

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947
            A D  G  R  L+ SL    K A    K       ++F    G  +D     + S  N  
Sbjct: 898  AFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQSYANVP 953

Query: 948  ---SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                 +  + E+  LG Y +GHP+  Y K I R  G    ++   T RG     A +V++
Sbjct: 954  PWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIA 1013

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1014 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|107103154|ref|ZP_01367072.1| hypothetical protein PaerPA_01004223 [Pseudomonas aeruginosa PACS2]
          Length = 1173

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1064 (40%), Positives = 636/1064 (59%), Gaps = 63/1064 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ +SL++G + +  +   +A    PA+A+TD +N+ S ++F + A  AGI+P
Sbjct: 4    SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I  C  DI +      + +   P   +  + LL   A+GY+ L EL+SR +   Q    +
Sbjct: 64   I--CGADIWLA-----SREEDGP---LSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W++E   EGLI L+    G I  A        AE  L  + ++F +R YV +QR 
Sbjct: 114  IIERDWVKE-AAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             R  D       V LA     PLVATN+  F+ +ED+EAH+  + +     +    RPR 
Sbjct: 173  SRVNDEEHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRT 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+ +EM  +FSDLPEALENTVEIA+RC+  +Q+    LP F       I    
Sbjct: 233  YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKG---YHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            ++ LR+ +  GLE RL +  + K    Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DDYLRHASFEGLEERL-EVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 348  FIKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDF 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI YV + YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP +
Sbjct: 408  CMEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 467

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+   +D     + E++ KLEG+ R    HA G+VI    L+  
Sbjct: 468  VGMTLD-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDF 526

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VD 597
             P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ +    A+RG++ V+
Sbjct: 527  SPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKRGLEPVN 586

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 587  IDFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 646

Query: 658  IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 647  GMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGA 706

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G   NGI   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 707  DMLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 766

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+KTH+P  F+AA +T +M N +K+    ++ R   ++I+ P VN     F V
Sbjct: 767  LVSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTV 826

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D+ RI Y L AIKGVG      I E  A+  PF++L DFC RVD K++N+R LE+L+ A
Sbjct: 827  DDDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRA 886

Query: 889  GALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---- 929
            GALD  G                +R  LL +++   + A+   ++  + H ++F      
Sbjct: 887  GALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAE 946

Query: 930  -EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
             E   +++   +++ +++    R + E+  LG Y +GHP+D Y+  +R+   +   E + 
Sbjct: 947  PEADVYANHRKVKELTLKE---RLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVE-LK 1002

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              R     +A ++V+ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1003 PARDTQT-VAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1045


>gi|332174819|gb|AEE24073.1| DNA polymerase III, alpha subunit [Glaciecola agarilytica
            4H-3-7+YE-5]
          Length = 1155

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1054 (40%), Positives = 628/1054 (59%), Gaps = 63/1054 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS YS+L+G   +  ++ ++ +   PA+A+TD  N+   ++F ++A A GI+PI
Sbjct: 6    FVHLRVHSDYSMLDGLNKIKPLISQVKSLNMPAVALTDQMNMCGLVKFYEQAHANGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    +          Q       V  + LL +  +GY+ +  L+S+ YL    +    
Sbjct: 66   IGTDFWV----------QSSALEDHVFRLTLLAANNKGYKNITLLISKAYLRGSVQDKAV 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-- 188
            I   WL E  +EG+I+L+GG  G +       +  +AEK    +++ F DR Y+ L R  
Sbjct: 116  IDQEWLAE-HSEGVIILSGGRMGDLGVYLTKGNVGLAEKATAFYQEHFPDRFYLELTRTA 174

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              G + Y   + V+ A  H LP+VATN   F+S +++EAH++ +A+     ++   RP++
Sbjct: 175  RVGEEDYIH-RAVEWAGQHNLPVVATNEVCFISPDNFEAHEIRVAIHDGYTLNDPRRPKL 233

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CDDIQ 304
             +   Y+++  EM  +F+D+P+A+ENTVEIA+RC+  + +    LP F   +    D + 
Sbjct: 234  YSEQQYMRSSEEMCELFADIPQAIENTVEIAKRCNVSVLLGTYFLPDFPTGDMSIADFLV 293

Query: 305  KEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            K  E         GLE RLA      +  +AK     +Y +RL  EL VI +M F GYFL
Sbjct: 294  KVSEE--------GLEKRLAFLFPDEEERLAK---RPEYDERLKVELVVINQMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNGIPVGPGRGSGAGSLVAYALGITDLDPLEFDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 403  DVDFCMDRRDEVIDHVAEMYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKL 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP  P   ++ +A  ++ R  E    D  V  L+++++ LEG+ R+A  HA G+VI    
Sbjct: 463  IPPTPGMTLT-KAFEEEPRLPELYAYDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPDK 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++Q ++D ++  +G+ +D
Sbjct: 522  ITDFAPLYCDDEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMISSGKGIDID 581

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP DD +++ LL    T  +FQLES GM+  ++ ++PD  EDIIALV+L+RPGP+ +
Sbjct: 582  ILAIPMDDKKSFKLLQRSETTAVFQLESRGMKDLIKRLRPDSFEDIIALVALFRPGPLQS 641

Query: 658  IVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N  +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ +SGYSL  A
Sbjct: 642  GMVDNFIDRKHGREAISYPDATYQHECLKEILEPTYGIILYQEQVMQIAQEMSGYSLGGA 701

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+E F +GA  N I   +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 702  DLLRRAMGKKKPEEMAKQRESFETGAKNNNIDPELAIKIFDLVEKFAGYGFNKSHSAAYA 761

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+KTHYP EF+AA M+ +MDN +KI     + ++  I ++PP VN     F V
Sbjct: 762  LVSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVTLVDECQRMGITLLPPDVNAGSYKFTV 821

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              + RI Y + AIKGVG      I+EA  + + F  L DFC++VD+K++N+RVLE LV+A
Sbjct: 822  DSEGRIVYGIGAIKGVGEGPIAAIIEARENHEKFTDLFDFCAKVDTKRINKRVLEKLVYA 881

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GALD  G  R  ++ +L      A        ++H    +H +      +T E   VE +
Sbjct: 882  GALDNLGPHRASIMATLPEAIAAA--------DQHAKAESHGQSDMFGLLTTEPEQVEQA 933

Query: 949  SVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
             V+          + E+  LG Y +GHP++ Y   +R        +   T +        
Sbjct: 934  FVKVPPWPEKVWLDGEKDTLGLYLTGHPINQYLQEIRHYCTGRLVDLKPTNKDVVSYAVG 993

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +V+  +    ++G R G VT  + +   +  FFP
Sbjct: 994  LVLGVRVMTNKRGRRWGIVTLDDKSARIDVRFFP 1027


>gi|312959407|ref|ZP_07773924.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens WH6]
 gi|311286124|gb|EFQ64688.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens WH6]
          Length = 1173

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1065 (40%), Positives = 623/1065 (58%), Gaps = 65/1065 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  AGI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G         +L ++N  K P   +  I LL     GY+ L EL+SR ++  Q   SV
Sbjct: 64   ICGA--------DLWLSN--KDPDNALSRISLLAMNGVGYRNLTELISRGFIDGQRNGSV 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ E  +EGLIML+    G I  A    + Q AE     + ++F DR Y+ +QR 
Sbjct: 114  IIEREWVAE-ASEGLIMLSAAKEGEIGLALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
            +R  D       V LA     PLVATN+  F+ +ED+EAH+  + +     +    R + 
Sbjct: 173  NRPNDEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + + YLK+  EM  +FSDLPEALEN+VEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSEEQYLKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RL+        + Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEEGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEAPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G + N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F V
Sbjct: 768  LVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTV 827

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  RI Y L AIKGVG      I EA  D PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  NDEGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887

Query: 890  ALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----H 929
            ALD  G                +R  LL +++   K A+   +   + H ++F       
Sbjct: 888  ALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEE 947

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
            +   +++    +  +++    R + E+  LG Y +GHP+D Y+  +R+       + +  
Sbjct: 948  DADVYANHRKAKDLTLKE---RLKGEKDTLGLYLTGHPIDEYEGEIRRFA----RQRIID 1000

Query: 990  IRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++   +   +A M+++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1001 LKPARDTQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045


>gi|270156895|ref|ZP_06185552.1| DNA polymerase III subunit alpha [Legionella longbeachae D-4968]
 gi|289164676|ref|YP_003454814.1| DNA polymerase III, alpha chain [Legionella longbeachae NSW150]
 gi|269988920|gb|EEZ95174.1| DNA polymerase III subunit alpha [Legionella longbeachae D-4968]
 gi|288857849|emb|CBJ11696.1| DNA polymerase III, alpha chain [Legionella longbeachae NSW150]
          Length = 1148

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/981 (42%), Positives = 615/981 (62%), Gaps = 39/981 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL+VH+ +SL++G + +  ++  + +    ++A+TD  NLF+A++  + A  AGI+PI
Sbjct: 5   FVHLRVHTEFSLVDGLVRVKPLMKALPSRGMYSVALTDHCNLFAAVKHYKSAIEAGIKPI 64

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG  L     ++             V S++LL   +EGY+ L  L+S+ Y   Q +   R
Sbjct: 65  IGSDLPCHNPEHPD----------RVFSLILLCLNSEGYKNLTCLISKAYQEGQYQGQPR 114

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
           +   W+ +  + GLI L+GG SG I +A   +  ++A  R L +++LF +R Y+ +QR  
Sbjct: 115 VQNQWIPDY-SAGLIALSGGKSGDIGQALLADDEELATSRALYWQELFSNRFYLEIQRTG 173

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRV 248
           R  +     +++ LA   +LPLVATN+  FL ++D+EAH+  + +    T+   +   + 
Sbjct: 174 RPEEADYNKKLIALANKLKLPLVATNDVRFLDKDDFEAHEARVCIHEGYTLADPRREQKY 233

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
           +   YL++  EM S+F+DLP AL NTVEI++RC+  L +    LP F   +   +    E
Sbjct: 234 SAQQYLRSADEMASLFADLPSALSNTVEISKRCTVKLDLGNNYLPNFPIPDGSTV----E 289

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARMKFSGYFLIVA 361
           N L + +  GLE RL Q  I K    +D       Y +RL  EL+VI  M F+GYFLIVA
Sbjct: 290 NYLSHLSKTGLEERLLQ--IFKNKSPEDLLNTRSEYDKRLQIELDVINNMGFAGYFLIVA 347

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID
Sbjct: 348 DFIQWAKNNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDID 407

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC + RD VI YV  KYG + V+QIITFG++ AKA +RDVGR L  PY  VD+L KLIP 
Sbjct: 408 FCMEGRDRVIDYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPF 467

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
           +    ++ +A+  +   +     +  V  L++++ KLEG+ R+A  HA G+VI    L+ 
Sbjct: 468 ELGITLN-KALEQEEELKRRYTEEEEVKELIDLALKLEGITRNAGKHAGGVVIAPSQLTD 526

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVK----V 596
              +Y +  S   V+QF+   +E AGL+KFDFLGL+TLT++  +L  +  QRG +    +
Sbjct: 527 FTAIYCEEGSSQIVSQFDKDDVEAAGLVKFDFLGLRTLTIIDWALATVNRQRGREGLPPI 586

Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
           D+S IP DD  ++ LL    T  +FQLES GM++ +  +QPDC EDIIALV+L+RPGP+ 
Sbjct: 587 DISQIPTDDPASFDLLKACQTTAVFQLESRGMKELINRLQPDCFEDIIALVALFRPGPLQ 646

Query: 657 NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
           + +V  + +RK+G+  +   HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L  AD+LR
Sbjct: 647 SGMVDDFIDRKHGRAAVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLR 706

Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           RAMGKK  EEM KQ+E F  GA++ G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++Y
Sbjct: 707 RAMGKKKPEEMAKQREIFTQGATERGVDEKVATHIFDLMEKFAGYGFNKSHSAAYALVAY 766

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN- 833
           QTAW+K HYP  F+AA M+ +MDN +K+  F  +     ++++PPS+N     F V D+ 
Sbjct: 767 QTAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLKVLPPSINHSMYHFTVVDDA 826

Query: 834 RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            I Y L AIKGVG +    I+EA      +  L  FC R+D +K+NRRVLE+L+ +GA D
Sbjct: 827 TIIYGLGAIKGVGESAIDCILEARDLGGSYPDLFSFCQRLDLRKVNRRVLEALIKSGAFD 886

Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVR 951
            +   R  L  SL+   K A+   +N+++   ++F+  + G    +  L K   E  + R
Sbjct: 887 QWKVERAVLTASLEKALKIAEKEHQNQSSGQFDLFSLLDDGAKEQEYVLCKSWSE--AQR 944

Query: 952 FENEQRVLGFYFSGHPLDVYK 972
            E E+ VLGFY +GHP D Y+
Sbjct: 945 LEGEREVLGFYLTGHPADQYR 965


>gi|50119986|ref|YP_049153.1| DNA polymerase III subunit alpha [Pectobacterium atrosepticum
            SCRI1043]
 gi|49610512|emb|CAG73957.1| DNA polymerase III alpha subunit [Pectobacterium atrosepticum
            SCRI1043]
          Length = 1160

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1054 (41%), Positives = 623/1054 (59%), Gaps = 56/1054 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ K AA   PA+AITD  NL   ++F   A  AG++
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKVGPLVKKTAALGMPALAITDFTNLCGLVKFYGGAHGAGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    ++  D L            +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 64   PIIGADFYVE-SDELG---------DELAHLTVLAMDNEGYQNLTLLISHAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+GG  G + R     +   AE+ L  +++ F  R Y+ L R
Sbjct: 114  PTIDRDWLIE-HQEGLILLSGGRRGDVGRFLLRGNQAQAEQCLAFYQEHFPQRYYLELTR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   V+LA  + LP+VATN   F+S +D++AH++ +A+     +    R
Sbjct: 173  TSRPDE--ESYIHAAVELATKYGLPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E    D
Sbjct: 231  PRHYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQFPTGEMSTAD 290

Query: 302  DIQKEEENELRNKAVAGL---EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
             + +  +  L ++  +     EVR+A+          +Y +RLD EL VI +M F GYFL
Sbjct: 291  FLVQCSKKGLEDRLESLFPDPEVRVAR--------RPEYDERLDIELGVINQMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N++PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNDVPVGPGRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 403  DVDFCMEKRDMVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    
Sbjct: 463  VPPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTK 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595
            ++   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K   
Sbjct: 522  ITDFAPLYCDSEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKLGQ 581

Query: 596  --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              +D++ IP  D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPG
Sbjct: 582  EPIDIATIPLGDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPG 641

Query: 654  PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+
Sbjct: 642  PLQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYT 701

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK   EM KQ+  F  GA   G++  +AV IF+L+ KFA YGFNKSH+
Sbjct: 702  LGGADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHS 761

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+   
Sbjct: 762  AAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLY 821

Query: 827  DFKVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884
             F V D+  I Y + AIKGVG      I+EA +    F  L D C+R D KKLNRRVLE 
Sbjct: 822  HFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEK 881

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ +GA D  G  R  L+ SL +  K A    K       ++F    G  +D     + S
Sbjct: 882  LIMSGAFDRLGPHRAALMNSLADALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQS 937

Query: 945  VEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLA 998
                      V  + E+  LG Y +GHP+  Y K I R       ++   T RG      
Sbjct: 938  YSTVPPWPEQVVLDGERETLGLYLTGHPITQYIKEIERYAAGVRLKDMHPTDRGKMTTAV 997

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 998  GLVLAARVMITKRGNRIGICTLDDRSGRLEIMLF 1031


>gi|313646755|gb|EFS11214.1| DNA polymerase III subunit alpha [Shigella flexneri 2a str. 2457T]
          Length = 1140

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1030 (41%), Positives = 620/1030 (60%), Gaps = 54/1030 (5%)

Query: 32   ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91
            ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q +L        
Sbjct: 7    LVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQCDLLGDE---- 60

Query: 92   PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151
                +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  EGLI+L+GG 
Sbjct: 61   ----LTHLTVLAANNTGYQNLALLISKAYQRGYGAAGPIIDRDWLIEL-NEGLILLSGGR 115

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELP 210
             G + R+    +S + ++ +  +++ F DR ++ L R  R  +       V+LA    LP
Sbjct: 116  MGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLP 175

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPE 269
            +VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  EM  +F+D+PE
Sbjct: 176  VVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPE 235

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QG 326
            AL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GLE RLA     
Sbjct: 236  ALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGLEERLAFLFPD 290

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
               +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ 
Sbjct: 291  EEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLV 350

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QI
Sbjct: 351  AYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQI 410

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
            ITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + +  E   AD 
Sbjct: 411  ITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEPQLPEIYEADE 469

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
             V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E A
Sbjct: 470  EVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYA 529

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIF 621
            GL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +L    T  +F
Sbjct: 530  GLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVF 589

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI----- 674
            QLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E+I        
Sbjct: 590  QLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQ 649

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EEM KQ+  F  
Sbjct: 650  HESLKSVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAE 709

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT 
Sbjct: 710  GAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTA 769

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHI 853
            +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIKGVG      I
Sbjct: 770  DMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 829

Query: 854  MEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            +EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A
Sbjct: 830  IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 889

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFENEQRVLGFYF 963
                K       ++F    G  ++    E   +E S          V  + E+  LG Y 
Sbjct: 890  DQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLDGERETLGLYL 941

Query: 964  SGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++G+RIG  T  +
Sbjct: 942  TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1001

Query: 1023 PAKEYEANFF 1032
             +   E   F
Sbjct: 1002 RSGRLEVMLF 1011


>gi|238784895|ref|ZP_04628895.1| DNA polymerase III subunit alpha [Yersinia bercovieri ATCC 43970]
 gi|238714212|gb|EEQ06224.1| DNA polymerase III subunit alpha [Yersinia bercovieri ATCC 43970]
          Length = 1171

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1056 (40%), Positives = 622/1056 (58%), Gaps = 49/1056 (4%)

Query: 4    YLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            YL+ + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A
Sbjct: 9    YLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSA 68

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              AGI+PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y  
Sbjct: 69   HGAGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQR 118

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDR 181
              G     I   WL     EGLI+L+GG  G + + F    +Q+   + L F ++ F   
Sbjct: 119  GYGAAGPIIDRDWLIR-HKEGLILLSGGRMGDVGK-FILRGNQIQVDQCLEFYQEHFPGS 176

Query: 182  LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ L R  R  +       V LA    LP+VATN+  F+ E D++AH++ +A+     +
Sbjct: 177  YYLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTL 236

Query: 241  SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +
Sbjct: 237  VDPKRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGK 296

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGY 356
                    E+ L  K+  GLE RL          AQ   +Y +RL+ EL VI +M F GY
Sbjct: 297  M-----STEDFLVEKSKQGLEERLELLFPDPEVRAQKRPEYDERLEIELKVINQMGFPGY 351

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMP
Sbjct: 352  FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMP 411

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ 
Sbjct: 412  DFDVDFCMEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 471

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KL+P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI  
Sbjct: 472  KLVPPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAP 530

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
              ++   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K 
Sbjct: 531  TKITDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKT 590

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+R
Sbjct: 591  GLEPIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFR 650

Query: 652  PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PGP+ + +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSG
Sbjct: 651  PGPLQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSG 710

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YSL  AD+LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKS
Sbjct: 711  YSLGGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKS 770

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+ 
Sbjct: 771  HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSG 830

Query: 825  CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVL 882
               F V D   I Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+L
Sbjct: 831  LYHFHVNDEGEIVYGIGAIKGVGEGPIEAMLEARKEGGHFKELFDLCARVDTKKLNRRIL 890

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E L+ +GA D  G  R  L+ SL    K A    K       ++F    G  +D     +
Sbjct: 891  EKLIMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMF----GVLADAPEQVE 946

Query: 943  FSVEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIR 996
             S  N       +  + E+  LG Y +GHP+  Y K I R  G +  ++   T RG    
Sbjct: 947  QSYANVPPWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTT 1006

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 1007 AVGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|318606915|emb|CBY28413.1| DNA polymerase III alpha subunit [Yersinia enterocolitica subsp.
            palearctica Y11]
          Length = 1171

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1049 (40%), Positives = 619/1049 (59%), Gaps = 46/1049 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A +AG++
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHSAGVK 74

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    +GYQ L  L+S  Y    G   
Sbjct: 75   PIIGADFYV----------QSEILGDELAHLTVLARNNKGYQNLTLLISEAYQRGYGAAG 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   EGLI+L+GG  G + +     +    E+ L  +++ F D  Y+ L R
Sbjct: 125  PIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHAQVEQCLEFYQEHFPDSYYLELIR 183

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP+
Sbjct: 184  TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 243

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 244  NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 298

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL          AQ    Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 299  TEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLIVMEF 358

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 359  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 418

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 419  MEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 478

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 479  GMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 537

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     +D+
Sbjct: 538  PLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDI 597

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 598  ASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 657

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD
Sbjct: 658  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 717

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 718  MLRRAMGKKNPAEMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 777

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 778  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 837

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG    + ++EA  +   F  L D C+RVD+KKLNRR+LE L+ +G
Sbjct: 838  DEGEIVYGIGAIKGVGEGPIKAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSG 897

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947
            A D  G  R  L+ SL    K A    K       ++F    G  +D     + S  N  
Sbjct: 898  AFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQSYANVP 953

Query: 948  ---SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                 +  + E+  LG Y +GHP+  Y K I R  G    ++   T RG     A +V++
Sbjct: 954  PWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIA 1013

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1014 ARIMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|332038321|gb|EGI74766.1| DNA polymerase III alpha subunit [Pseudoalteromonas haloplanktis
            ANT/505]
          Length = 1163

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1064 (41%), Positives = 615/1064 (57%), Gaps = 70/1064 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS +S+++G      I+ K    Q PAIAITD  N    + F      AGI
Sbjct: 3    APDFVHLRVHSDFSMVDGLAKTKPIVAKAQELQMPAIAITDQMNFCGLVRFYGATHNAGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTP-FPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQG 125
            +PI+G    +            ++P FP  PS + +L    +GY+ +  L+S+ Y     
Sbjct: 63   KPIVGADFWV------------RSPEFPDEPSRLTILAKDNDGYKNITLLISKAYQRGHV 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   WL E+   GLI+L+G   G + +A   N+  V E  +  +K+ F D  Y+ 
Sbjct: 111  FHRPVIDREWLVELKA-GLIILSGAKDGDLGKALLKNNPTVIESVVSFYKQHFSDNYYLE 169

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R +R  +       V+LA   +LP+VATN  +FL  E++EAH++ +A+     +  K 
Sbjct: 170  LVRTNRPLEEDYLHMAVELAAKEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDKR 229

Query: 245  RP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP R + + YLK   +M  +FSD+PEAL+NTVEIA+RC+  +Q+    LP +        
Sbjct: 230  RPKRFSEEQYLKTPEQMAELFSDIPEALQNTVEIAKRCNVTVQLGTYFLPDYPTGSL--- 286

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              + E+ L   +  GLE RL         +     +Y +RL  EL VI +M F GYFLIV
Sbjct: 287  --KIEDFLVKVSQDGLEERLQFLFPDEEDRKVKRVEYDERLAIELGVINQMGFPGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 345  MEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP
Sbjct: 405  DFCMDRRDEVIDHVSALYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   ++ +A   + R +EA   D  V  L+++ + LEG  R+A  HA G+VI    ++
Sbjct: 465  GDPGMTLA-KAFDVEPRLQEAYDGDNEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTIT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
                +Y D     PVTQF+   +E AGL+KFDFLGL+TLT+LQ ++D    R  +     
Sbjct: 524  DFAALYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWAVDMTNVRMKRQGKDP 583

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD++ IP DD ++  LL    T  +FQLES GM+  +  ++PDC ED+IALV+L+RPGP+
Sbjct: 584  VDINTIPLDDKKSIELLLRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGPL 643

Query: 656  DNIVVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
             + +V N  +RK G+E+I          S+ P++DP    T G+I+YQEQVMQIAQ+L+G
Sbjct: 644  QSGMVDNFIDRKLGREEISYPDAQYQHESLKPILDP----TYGIILYQEQVMQIAQVLAG 699

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            Y+L  AD+LRRAMGKK  EEM KQ+  F  GA  NGI   +A+ IF+L+ KFA YGFNKS
Sbjct: 700  YTLGGADMLRRAMGKKKPEEMAKQRSTFEDGARNNGIDGELAIKIFDLVEKFAGYGFNKS 759

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT WMKTH+P EF+AA M+ +MDN +KI     +     + ++PP VN  
Sbjct: 760  HSAAYALVSYQTLWMKTHHPAEFMAAVMSADMDNTDKIVILVDECENMKLTLLPPDVNAG 819

Query: 825  CVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVL 882
               F V  +  I Y + AIKGVG      I+EA A   PF  L DFC+RVD K+LN+RV 
Sbjct: 820  EFKFTVNLEGEIVYGIGAIKGVGEAPVDAILEARAKGGPFKDLFDFCARVDLKRLNKRVT 879

Query: 883  ESLVFAGALDCFGYSRMQ-----LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            E L++AGALD  G  + Q     LL SL +  + A    K       ++F          
Sbjct: 880  EKLIYAGALDQLGPEKTQSGRATLLASLKDAMRAADQHNKAEQLGQSDLFGL-------- 931

Query: 938  ITLEKFSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
            +  E   VE + ++          + E+  LG Y +GHP++ Y+  LR        +   
Sbjct: 932  LATEPDEVEQAFIKATGLTDNEWLDGEKETLGLYLTGHPINQYRRELRHYTSGKIVDLQP 991

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            T R      A +V++ +    +KG+R   VT  + +   +   +
Sbjct: 992  TNRDVFATAAGLVIASRVLINKKGNRWALVTLDDKSARIDVRLY 1035


>gi|86146874|ref|ZP_01065193.1| DNA polymerase III subunit alpha [Vibrio sp. MED222]
 gi|218710303|ref|YP_002417924.1| DNA polymerase III subunit alpha [Vibrio splendidus LGP32]
 gi|85835326|gb|EAQ53465.1| DNA polymerase III subunit alpha [Vibrio sp. MED222]
 gi|218323322|emb|CAV19499.1| DNA polymerase III alpha subunit [Vibrio splendidus LGP32]
          Length = 1159

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1053 (40%), Positives = 622/1053 (59%), Gaps = 55/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A   G++
Sbjct: 4    PKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHGCGVK 63

Query: 69   PIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PIIG    +   D  D L               + ++ ++ +GY  L  L+S+ YL    
Sbjct: 64   PIIGADFLMQSPDFGDELT-------------KLTVIATSNKGYNNLTLLISKAYLRGHV 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            +    I   WL E   EGLI+L+G   G I +A    + ++    +  +K  F DR Y+ 
Sbjct: 111  QHQPVIDKEWLIE-HAEGLILLSGAKEGEIGKALLKGNRELVASSVEFYKTHFADRFYLE 169

Query: 186  LQRHRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            L R    D   ES +   ++LA   +LP+VATN  +F+SE+ ++AH++ +A+     +  
Sbjct: 170  LIRTGRTDE--ESYLHFALELAEQEDLPVVATNEVVFISEDLFDAHEIRVAIHDGFTMVD 227

Query: 243  KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RP+  +P  YL++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP F  +   
Sbjct: 228  PRRPKNYSPQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTEGL- 286

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L  K+  GLE RLA        +     +Y +RL  EL V+  M F GYFL
Sbjct: 287  ----AIEDFLIKKSEEGLERRLAFLFPDEKVRAERRPEYDERLKIELEVVNNMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL
Sbjct: 403  DIDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKL 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +P DP   +    +A+ +   E    D  V  L++  + LEG  R+A  HA G+VI    
Sbjct: 463  VPPDPGMTLEKAFLAEPA-LPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTT 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595
            ++   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K   
Sbjct: 522  ITDFAPIYADAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLAKEGK 581

Query: 596  --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              V +  IP DD  +++LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPG
Sbjct: 582  DPVRIESIPLDDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641

Query: 654  PIDNIVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V N  +RK+G+E +        H  +   L+ T G+I+YQEQVMQIAQ+L+GY+
Sbjct: 642  PLQSGMVDNFIDRKHGREAVSYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYT 701

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+
Sbjct: 702  LGGADMLRRAMGKKKPEEMAKQRGTFKEGAEANGVDGELSMKIFDLVEKFAGYGFNKSHS 761

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N+   
Sbjct: 762  AAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVIGLVDECFRMKLKLLPPDINSGLY 821

Query: 827  DFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884
             F V  D  I Y + AIKGVG      I+EA +    F  L DFC+R+D KK+N+RV+E 
Sbjct: 822  RFNVDEDGAIVYGIGAIKGVGEGPIEAIIEARNKGGYFKDLFDFCARLDLKKVNKRVIEK 881

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLE 941
            L+ +GALD  G  R  ++ SL +  K A       +    ++F    G  +D   ++  +
Sbjct: 882  LILSGALDRLGPHRAAMMASLKDAVKAASQHHHAESFGQSDMF----GVLTDAPEEVEHK 937

Query: 942  KFSVEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
               V      V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A 
Sbjct: 938  YTQVPKWPEKVWLEGERETLGLYLTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAG 997

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG +T  + +   E   F
Sbjct: 998  LVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|332160607|ref|YP_004297184.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp.
            palearctica 105.5R(r)]
 gi|325664837|gb|ADZ41481.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp.
            palearctica 105.5R(r)]
          Length = 1171

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1049 (40%), Positives = 618/1049 (58%), Gaps = 46/1049 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A +AG++
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHSAGVK 74

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    +GYQ L  L+S  Y    G   
Sbjct: 75   PIIGADFYV----------QSEILGDELAHLTVLARNNKGYQNLTLLISEAYQRGYGAAG 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   EGLI+L+GG  G + +     +    E+ L  +++ F D  Y+ L R
Sbjct: 125  PIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHAQVEQCLEFYQEHFPDSYYLELIR 183

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP+
Sbjct: 184  TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 243

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 244  NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 298

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL          AQ    Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 299  TEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLIVMEF 358

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 359  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 418

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 419  MEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 478

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 479  GMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 537

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     +D+
Sbjct: 538  PLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDI 597

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 598  ASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 657

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD
Sbjct: 658  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 717

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 718  MLRRAMGKKNPAEMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 777

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 778  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 837

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE L+ +G
Sbjct: 838  DEGEIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSG 897

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947
            A D  G  R  L+ SL    K A    K       ++F    G  +D     + S  N  
Sbjct: 898  AFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQSYANVP 953

Query: 948  ---SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                 +  + E+  LG Y +GHP+  Y K I R  G    ++   T RG     A +V++
Sbjct: 954  PWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIA 1013

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1014 ARIMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|256823112|ref|YP_003147075.1| DNA polymerase III subunit alpha [Kangiella koreensis DSM 16069]
 gi|256796651|gb|ACV27307.1| DNA polymerase III, alpha subunit [Kangiella koreensis DSM 16069]
          Length = 1161

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1040 (41%), Positives = 624/1040 (60%), Gaps = 45/1040 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P F+HL++H+ YS+++  + +  ++      Q PAIA+TD  N+   ++F  ++ +AGI
Sbjct: 2    TPRFIHLKMHTEYSMVDSVVRIKPLIATCKEHQIPAIAMTDQMNMCGLVKFYSQSVSAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G  L I      +  N     F     +  L     GY  L  ++SR YL +Q + 
Sbjct: 62   KPIAGADLLI------QNPNDEDEHF----RVTALCMNNTGYLNLKYVISRAYLKNQHRG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL E   EGLI+L+GG  G + +A    +   A   L  +   F DR Y+ LQ
Sbjct: 112  LPLVKKEWLPEY-AEGLIILSGGRQGDVGKALLAGNMDQAASNLGFWNHHFKDRFYLELQ 170

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R  +     QV+ LA     P+VATN+  F+ +ED++AH+  + +    V++   RP
Sbjct: 171  RTGRPQENEYIHQVIGLAQGASTPVVATNDVRFIDKEDFDAHEARVCINQGRVLADPRRP 230

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  +   YL++  EMV +F D+PEALEN+VEIA+RC+  +++    LP F   E   I +
Sbjct: 231  REYSEQQYLRSEQEMVELFEDIPEALENSVEIAKRCNLEMRLGEYFLPEFPIPEGMTIAQ 290

Query: 306  EEENELRNKAVAGLEVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              E   ++    GLE RL Q     A       + Y +RL  EL+VI  M F GYFLIVA
Sbjct: 291  YFEKVSKD----GLEERLDQLFDRNADDFAEIRKAYDERLQIELDVINDMGFPGYFLIVA 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQW+K N +PVGPGRGSGAGS+ AYA+ ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 347  DFIQWSKNNGVPVGPGRGSGAGSLVAYAMKITDLDPLEYDLLFERFLNPERVSMPDFDVD 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RD VI YV  +YG   V+QIITFG++ AKA +RDVGR    PY  VD+L KLIP 
Sbjct: 407  FCMEGRDRVIDYVAERYGRNSVSQIITFGTMAAKAVIRDVGRVFSHPYGFVDKLAKLIPF 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +  +A   +         D  V  L ++++KLEG+ R+A  HA G+VI    L +
Sbjct: 467  EVGMTLE-KAFEQEPELPRLYEEDEDVRELWDLARKLEGVTRNAGKHAGGVVIAPNDLEE 525

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD----FLAQRGVK-V 596
              P+Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +++     +A++G + +
Sbjct: 526  FAPLYCDETGHNIVTQFDKDDVESAGLVKFDFLGLRTLTIIDWAIETANGIIAKKGEEPI 585

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ I  +D + + LL    T  +FQLES GM+  ++ ++P+  EDIIALV+L+RPGP+ 
Sbjct: 586  DITAIDTEDQQVFDLLQRADTTAVFQLESRGMKDLIKRLKPNRFEDIIALVALFRPGPLQ 645

Query: 657  NIVVYN--NRKNGKEKIVSI------HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            + +V N  NRK+G+E IVS       H  +  +L+ T G+I+YQEQVMQIAQ+L+GY+L 
Sbjct: 646  SGMVDNFINRKHGRE-IVSYPDANYQHESLKEILEPTYGIILYQEQVMQIAQVLAGYTLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM+KQ+  F  GA KN +   +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 705  GADILRRAMGKKKPEEMEKQRSIFKEGAIKNNVDGDLAMKIFDLVEKFAGYGFNKSHSAA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+++YQTAW+KTH+P  F+AA M+ +MDN +K+  + +DA   N+ I PP VN     F
Sbjct: 765  YALVAYQTAWLKTHHPAAFMAAVMSSDMDNTDKVVTYVEDAANSNLTITPPDVNKGQYRF 824

Query: 829  KVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V  + RI Y + AIKGVG      I+ E  A+ P+  L DFCSRVD KK NRR LE+L+
Sbjct: 825  SVDEEGRIVYGIGAIKGVGEGAIESIVNEREANGPYKDLFDFCSRVDLKKANRRTLEALI 884

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK----ITLEK 942
             AGA+D  G +R  L+ SLD   K A+   K++    +++F     T + +    I ++ 
Sbjct: 885  RAGAMDLIGPNRATLMASLDEAVKAAEQFNKSQAAGQDDLFGSVVATTATEQHQYIRVKP 944

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            ++ E      + E+  LG Y +GHP+D Y P +++M I        T RGN+ R+  ++V
Sbjct: 945  WTDEQV---LQGEKETLGLYLTGHPIDRYIPEIKQMSITRLRNLQPTGRGNSARVVGLIV 1001

Query: 1003 SKQQKKTRKGSRIGWVTFSE 1022
              +   T++G ++  +T  +
Sbjct: 1002 GMRVMNTKRGDKMAILTLDD 1021


>gi|15598836|ref|NP_252330.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PAO1]
 gi|116051637|ref|YP_789524.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218890135|ref|YP_002438999.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa LESB58]
 gi|254242338|ref|ZP_04935660.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 2192]
 gi|296387855|ref|ZP_06877330.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PAb1]
 gi|14194674|sp|Q9HXZ1|DPO3A_PSEAE RecName: Full=DNA polymerase III subunit alpha
 gi|9949800|gb|AAG07028.1|AE004784_1 DNA polymerase III, alpha chain [Pseudomonas aeruginosa PAO1]
 gi|13992731|gb|AAG16710.2| DNA polymerase III [Pseudomonas aeruginosa]
 gi|115586858|gb|ABJ12873.1| DNA polymerase III, alpha subunit [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126195716|gb|EAZ59779.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 2192]
 gi|218770358|emb|CAW26123.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa LESB58]
          Length = 1173

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1064 (40%), Positives = 636/1064 (59%), Gaps = 63/1064 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ +SL++G + +  +   +A    PA+A+TD +N+ S ++F + A  AGI+P
Sbjct: 4    SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I  C  DI +      + +   P   +  + LL   A+GY+ L EL+SR +   Q    +
Sbjct: 64   I--CGADIWLA-----SREEDGP---LSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W++E   EGLI L+    G I  A        AE  L  + ++F +R YV +QR 
Sbjct: 114  IIERDWVKE-AAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             R  D       V LA     PLVATN+  F+ +ED+EAH+  + +     +    RPR 
Sbjct: 173  SRVNDEEHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRT 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+ +EM  +FSDLPEALENTVEIA+RC+  +Q+    LP F       I    
Sbjct: 233  YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKG---YHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            ++ LR+ +  GLE RL +  + K    Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DDYLRHASFEGLEERL-EVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 348  FIKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDF 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI YV + YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP +
Sbjct: 408  CMEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 467

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+   +D     + E++ KLEG+ R    HA G+VI    L+  
Sbjct: 468  VGMTLD-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDF 526

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VD 597
             P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ +    A++G++ V+
Sbjct: 527  SPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVN 586

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 587  IDFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 646

Query: 658  IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 647  GMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGA 706

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G   NGI   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 707  DMLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 766

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+KTH+P  F+AA +T +M N +K+    ++ R   ++I+ P VN     F V
Sbjct: 767  LVSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTV 826

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D+ RI Y L AIKGVG      I E  A+  PF++L DFC RVD K++N+R LE+L+ A
Sbjct: 827  DDDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRA 886

Query: 889  GALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---- 929
            GALD  G                +R  LL +++   + A+   ++  + H ++F      
Sbjct: 887  GALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAE 946

Query: 930  -EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
             E   +++   +++ +++    R + E+  LG Y +GHP+D Y+  +R+   +   E + 
Sbjct: 947  PEADVYANHRKVKELTLKE---RLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVE-LK 1002

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              R     +A ++V+ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1003 PARDTQT-VAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1045


>gi|239993623|ref|ZP_04714147.1| DNA polymerase III subunit alpha [Alteromonas macleodii ATCC 27126]
          Length = 1154

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1045 (41%), Positives = 611/1045 (58%), Gaps = 39/1045 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  F+HL+VHS +S+++G   +  IL K+AA   PA+AITD  N+   ++F  +A   GI
Sbjct: 2    SSPFIHLRVHSDFSMMDGLNKVKPILGKVAALGMPAVAITDQMNMCGLVKFYSEAHNLGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQ--GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            +PIIG         +  +TN+  G  PF     + L+    EGY+ +  L+S+ YL    
Sbjct: 62   KPIIGT--------DFWVTNEVFGDEPF----RLTLIAMNNEGYKNITILISKAYLRGHL 109

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   WL E  +EG+I L+G   G +      N++++ +  L  ++  F DR Y+ 
Sbjct: 110  SHRAVIDQEWLAE-HSEGVIALSGAQHGDVGVGLMKNNAKILDSALEFYQTHFPDRFYLE 168

Query: 186  LQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            L R   +G + Y     V+LA    LP+VATN   F+  E ++AH++ + +     +   
Sbjct: 169  LIRTGRQGEEDYLH-LAVELAEQRGLPVVATNEVCFIDREGFDAHEIRVCIHDGYTLDDN 227

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP R +   YL+   EMV +FSD+PEA+ENTVEIA+RC+  ++++   LP+F       
Sbjct: 228  RRPKRYSDQQYLRTAEEMVELFSDIPEAIENTVEIAKRCNVTVRLNEYFLPQFPTGGM-- 285

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L   +  GLE RL         +     +Y  RL  EL VI +M F GYFLI
Sbjct: 286  ---TTEDFLVKVSEEGLEERLEFLFPDEEVRKAKRPEYDDRLRIELEVINQMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 343  VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 403  VDFCMDRRDEVIDHVAELYGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLI 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   +D  V  L+++++ LEG+ R+A  HA G+VI    +
Sbjct: 463  PPDPGMTLE-KAFKAEPQLPEVYESDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPTTI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++Q ++D + + + V VD+
Sbjct: 522  TDFSPLYCDDEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKEGKNVDVDI 581

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S IP +D +++  L    T  +FQLES GM++ ++ ++PDC EDIIALV+L+RPGP+ + 
Sbjct: 582  SAIPLEDPKSFRTLQNAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSG 641

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  +  +L+ T G+I+YQEQVMQIAQ ++GYSL  AD
Sbjct: 642  MVDNFIDRKHGREEISYPDAEYQHECLKEILEPTYGIILYQEQVMQIAQEMAGYSLGGAD 701

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA  N I   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 702  LLRRAMGKKKPEEMAKQRGTFAEGAKGNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYAL 761

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQT W+K HYP EF+AA M+ +MDN +KI     +  +  I+I+PP +NT    F V 
Sbjct: 762  VSYQTLWLKVHYPAEFMAAVMSADMDNTDKIVTLVDECERMGIEILPPDLNTGKYKFTVD 821

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             + RI Y + AIKGVG      I+EA      F  L DFC+++D K++N+RVLE LV AG
Sbjct: 822  SEGRIVYGIGAIKGVGEGPIEAIIEARETQGAFKDLFDFCAKIDIKRVNKRVLEKLVLAG 881

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948
            A+D  G  R  L+ SL      A    K  +    ++F        D K           
Sbjct: 882  AMDNLGPHRASLMASLPEALAAAGQHAKAESFGQSDMFGLLTTEPEDVKQAFADVPEWPE 941

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             V  E E+  LG Y +GHP++ Y   LR        +   T +        +V+  +   
Sbjct: 942  KVWLEGEKDTLGLYLTGHPINQYAEELRYYTDGRLVDLKPTNKDQMASAVGLVLGVRVMT 1001

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++G R   VT  + +   +  FFP
Sbjct: 1002 NKRGRRWAIVTLDDKSARIDVRFFP 1026


>gi|238763963|ref|ZP_04624919.1| DNA polymerase III subunit alpha [Yersinia kristensenii ATCC 33638]
 gi|238697780|gb|EEP90541.1| DNA polymerase III subunit alpha [Yersinia kristensenii ATCC 33638]
          Length = 1171

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1055 (40%), Positives = 620/1055 (58%), Gaps = 47/1055 (4%)

Query: 4    YLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            YL+ + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A
Sbjct: 9    YLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSA 68

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              AGI+PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y  
Sbjct: 69   HGAGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQR 118

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
              G     I   WL +   EGLI+L+GG  G + +     +    +  L  +++ F    
Sbjct: 119  GYGAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHTQVDLCLEFYQEHFPGSY 177

Query: 183  YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ L R  R  +       V LA    LP+VATN+  F+ E D++AH++ +A+     + 
Sbjct: 178  YLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLV 237

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   + 
Sbjct: 238  DPKRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM 297

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357
                   E+ L  K+  GLE RL          AQ   +Y +RL+ EL VI +M F GYF
Sbjct: 298  -----STEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPEYDERLEIELKVINQMGFPGYF 352

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPD
Sbjct: 353  LIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPD 412

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ K
Sbjct: 413  FDVDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK 472

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI   
Sbjct: 473  LVPPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPT 531

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             ++   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K  
Sbjct: 532  KITDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTG 591

Query: 596  ---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D++ IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RP
Sbjct: 592  LEPIDIASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRP 651

Query: 653  GPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY
Sbjct: 652  GPLQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGY 711

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL  AD+LRRAMGKK  EEM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH
Sbjct: 712  SLGGADMLRRAMGKKNPEEMAKQRSIFEDGAKSQGVEGELAIKIFDLVEKFAGYGFNKSH 771

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+  
Sbjct: 772  SAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGL 831

Query: 826  VDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLE 883
              F V D   I Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE
Sbjct: 832  YHFHVNDEGEIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILE 891

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
             L+ +GA D  G  R  L+ SL    K A    K       ++F    G  +D     + 
Sbjct: 892  KLIMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQ 947

Query: 944  SVEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRL 997
            S  N       +  + E+  LG Y +GHP+  Y K I R  G    ++   T RG     
Sbjct: 948  SYANVPPWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMA 1007

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 1008 AGLVIASRVMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|313109045|ref|ZP_07795017.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 39016]
 gi|310881519|gb|EFQ40113.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 39016]
          Length = 1185

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1064 (40%), Positives = 636/1064 (59%), Gaps = 63/1064 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ +SL++G + +  +   +A    PA+A+TD +N+ S ++F + A  AGI+P
Sbjct: 16   SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 75

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I  C  DI +      + +   P   +  + LL   A+GY+ L EL+SR +   Q    +
Sbjct: 76   I--CGADIWLA-----SREEDGP---LSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEI 125

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W++E   EGLI L+    G I  A        AE  L  + ++F +R YV +QR 
Sbjct: 126  IIERDWVKE-AAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 184

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             R  D       V LA     PLVATN+  F+ +ED+EAH+  + +     +    RPR 
Sbjct: 185  SRVNDEEHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRT 244

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+ +EM  +FSDLPEALENTVEIA+RC+  +Q+    LP F       I    
Sbjct: 245  YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 300

Query: 308  ENELRNKAVAGLEVRLAQGAIAKG---YHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            ++ LR+ +  GLE RL +  + K    Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 301  DDYLRHASFEGLEERL-EVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 359

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 360  FIKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDF 419

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI YV + YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP +
Sbjct: 420  CMEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 479

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+   +D     + E++ KLEG+ R    HA G+VI    L+  
Sbjct: 480  VGMTLD-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDF 538

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VD 597
             P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ +    A++G++ V+
Sbjct: 539  SPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVN 598

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 599  IDFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 658

Query: 658  IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 659  GMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGA 718

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G   NGI   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 719  DMLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 778

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+KTH+P  F+AA +T +M N +K+    ++ R   ++I+ P VN     F V
Sbjct: 779  LVSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTV 838

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D+ RI Y L AIKGVG      I E  A+  PF++L DFC RVD K++N+R LE+L+ A
Sbjct: 839  DDDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRA 898

Query: 889  GALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---- 929
            GALD  G                +R  LL +++   + A+   ++  + H ++F      
Sbjct: 899  GALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAE 958

Query: 930  -EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
             E   +++   +++ +++    R + E+  LG Y +GHP+D Y+  +R+   +   E + 
Sbjct: 959  PEADVYANHRKVKELTLKE---RLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVE-LK 1014

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              R     +A ++V+ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1015 PARDTQT-VAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1057


>gi|152999992|ref|YP_001365673.1| DNA polymerase III subunit alpha [Shewanella baltica OS185]
 gi|151364610|gb|ABS07610.1| DNA polymerase III, alpha subunit [Shewanella baltica OS185]
          Length = 1157

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1044 (40%), Positives = 614/1044 (58%), Gaps = 38/1044 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      AGI+
Sbjct: 4    PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  MQ       +G+     + ++ ++     GYQ L +++S+ YL  Q    
Sbjct: 64   PIIGA--DFWMQ---VPGFEGE-----LCALTIIAMNNVGYQNLTQIISQAYLRGQVAGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            V I   WL     EG+++L+G   G + +A    +S   E     ++  F DR ++ L R
Sbjct: 114  VVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFLELIR 172

Query: 189  HRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                D  RY    V+ LA    +P+VATN  +FL  ED++AH++ +A+     ++   RP
Sbjct: 173  TGRPDEERYLHMAVI-LAQDKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRP 231

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  +   YL++  EM  +F+D+P AL N+VEIA+RC+  ++++   LP F   +      
Sbjct: 232  KKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYFLPNFPTGDM----- 286

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+ L + +  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +
Sbjct: 287  SIEDFLVDCSRKGLEERLGFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLIVME 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP +
Sbjct: 407  CMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPE 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   ++ +A   +   +E+   D  V  L+++ +KLEG+ R+A  HA G+VI    ++  
Sbjct: 467  PGMTLA-KAFEVEPALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
             P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +  VK     + 
Sbjct: 526  APLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGRKPIR 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  I   D   + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ +
Sbjct: 586  IEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645

Query: 658  IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N   RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  A
Sbjct: 646  GMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DMLRRAMGKKKPEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     F V
Sbjct: 766  LVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFTV 825

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+ AG
Sbjct: 826  DDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAG 885

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948
            ALD  G  R  ++ +L    + A    K       ++F        D K    + +    
Sbjct: 886  ALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTPWPD 945

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             +  E E+  LG Y +GHP++ Y   L+       ++   T RG   + A +VV+ +   
Sbjct: 946  KIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATRVML 1005

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++GS++G +T  + +   E   F
Sbjct: 1006 TKRGSKMGLLTLDDKSARLEIMLF 1029


>gi|109897589|ref|YP_660844.1| DNA polymerase III, alpha subunit [Pseudoalteromonas atlantica T6c]
 gi|109699870|gb|ABG39790.1| DNA polymerase III, alpha subunit [Pseudoalteromonas atlantica T6c]
          Length = 1155

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1054 (40%), Positives = 628/1054 (59%), Gaps = 63/1054 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS YS+L+G   +  ++  + +   PA+A+TD  N+   ++F ++A + GI+PI
Sbjct: 6    FVHLRVHSDYSMLDGLNKVKPLIAHVKSLNMPAVALTDQMNMCGLVKFYEQAHSNGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    +   D L+           V  + LL +  +GY+ +  L+S+ YL    +    
Sbjct: 66   IGTDFWV-QSDALE---------DHVFRLTLLAANNKGYKNITLLISKAYLRGSVQDKAV 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-- 188
            I   WL E  +EG+I+L+GG  G +       +  +AEK    +++ F DR Y+ L R  
Sbjct: 116  IDQEWLVE-HSEGVIILSGGRMGDLGVYLTKGNVGLAEKATAFYQQHFPDRFYLELTRTG 174

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              G + Y   + V+ A  H+LP+VATN   F+S +++EAH++ +A+     ++   RP++
Sbjct: 175  RLGEEDYIH-RAVEWAGQHDLPVVATNEVCFISPDNFEAHEIRVAIHDGYTLNDPRRPKL 233

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CDDIQ 304
             +   Y++   EM  +F+D+P+A+ENTVEIA+RC+  + +    LP F   +    D + 
Sbjct: 234  YSEQQYMRTSEEMCELFADIPQAIENTVEIAKRCNVSVLLGTYFLPDFPTGDMSIADFLV 293

Query: 305  KEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            K  E         GLE RLA      +  +AK     +Y +RL  EL VI +M F GYFL
Sbjct: 294  KVSEE--------GLEKRLAFLFPDEEERLAK---RPEYDERLKIELVVINQMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNGIPVGPGRGSGAGSLVAYALGITDLDPLEFDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 403  DVDFCMDRRDEVIDHVAEMYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKL 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP  P   ++ +A  ++ R  E    D  V  L+++++ LEG+ R+A  HA G+VI    
Sbjct: 463  IPPTPGMTLT-KAFEEEPRLPELYAYDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPDK 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD 597
            ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++Q ++D + A +GV +D
Sbjct: 522  ITDFAPLYCDDEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMISAGKGVDID 581

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP DD +++ LL    T  +FQLES GM+  ++ ++PD  EDIIALV+L+RPGP+ +
Sbjct: 582  ILAIPMDDKKSFKLLQRSETTAVFQLESRGMKDLIKRLRPDSFEDIIALVALFRPGPLQS 641

Query: 658  IVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N  +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ +SGYSL  A
Sbjct: 642  GMVDNFIDRKHGREAISYPDATYQHECLKEILEPTYGIILYQEQVMQIAQEMSGYSLGGA 701

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+E F +GA  N I   +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 702  DLLRRAMGKKKPEEMAKQRESFETGAKNNNIDPELAIKIFDLVEKFAGYGFNKSHSAAYA 761

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+KTHYP EF+AA M+ +MDN +KI     + ++  I ++PP VN     F V
Sbjct: 762  LVSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVTLVDECQRMGITLLPPDVNAGSYKFTV 821

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              + RI Y + AIKGVG      I+EA  + + F  L DFC++VD+K++N+RVLE LV+A
Sbjct: 822  DSEGRIVYGIGAIKGVGEGPIAAIIEARENHEKFTDLFDFCAKVDTKRINKRVLEKLVYA 881

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GALD  G  R  ++ +L      A        ++H    AH +      +T E   VE +
Sbjct: 882  GALDNLGPHRASIMATLPEAISAA--------DQHAKAEAHGQSDMFGLLTTEPEQVEQA 933

Query: 949  ---------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
                      V  + E+  LG Y +GHP++ Y   ++        +   T +        
Sbjct: 934  FAKVPHWAEKVWLDGEKVTLGLYLTGHPINQYAQEIKHYCTGRLIDLKPTHKDVVSYAVG 993

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +V+  +    ++G R G VT  + +   +  FFP
Sbjct: 994  LVIGVRVMTNKRGRRWGIVTLDDKSARIDVRFFP 1027


>gi|70728573|ref|YP_258322.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens Pf-5]
 gi|68342872|gb|AAY90478.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens Pf-5]
          Length = 1173

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1065 (40%), Positives = 620/1065 (58%), Gaps = 65/1065 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +A    PA+A+TD NN+ S ++F + +  AGI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRIKPLVKALAGMGMPAVAVTDQNNMCSLVKFYKTSMGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G         +L ++N  K P   +  I LLV  A GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGA--------DLWLSN--KDPDNPLSRISLLVMNAVGYRNLTELISRGFIDGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ E   EGLIML+    G I  A      +VAE     +  +F +R Y+ +QR 
Sbjct: 114  IIEREWVAE-AAEGLIMLSAAKEGEIGMALIAGDLEVAETLAREWMAVFSERFYLEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +R  D  +    V LA     PLVATN+  F+ +ED+EAH+  + +     +    R + 
Sbjct: 173  NRPNDEEQLHAAVALADKIGAPLVATNDVRFIKQEDFEAHETRVCIGEGRALDDPRRSKN 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP +   +   I    
Sbjct: 233  YSDQQYLKSAEEMAELFSDLPEALENTVEIAKRCNIEVKLGKHFLPDYPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RL+        + Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   HP      + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELAYPHPDYQYDGLQPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G + N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F V
Sbjct: 768  LVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRIMKLRLDAPDVNTSEFKFTV 827

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  RI Y L AIKGVG      I EA    PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  NDEGRIVYGLGAIKGVGEGPVEAITEAREAGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887

Query: 890  ALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            ALD  G                +R  LL +++   K A+   +   + H ++F    G F
Sbjct: 888  ALDRLGPHFFDEPKAYQANIDQNRAVLLAAMEEAIKAAEQTARTHDSGHADLFG---GVF 944

Query: 935  SDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
             D+         K        R + E+  LG Y +GHP+D Y+  +R+       + +  
Sbjct: 945  VDEDADVYANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFA----RQRIID 1000

Query: 990  IRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++   +   +A M+++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1001 LKPARDTQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045


>gi|238792741|ref|ZP_04636372.1| DNA polymerase III subunit alpha [Yersinia intermedia ATCC 29909]
 gi|238727849|gb|EEQ19372.1| DNA polymerase III subunit alpha [Yersinia intermedia ATCC 29909]
          Length = 1171

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1050 (40%), Positives = 616/1050 (58%), Gaps = 48/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 74

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 75   PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDRLYVNLQ 187
              I   WL +   EGLI+L+GG  G + + F    +Q    + L F ++ F    Y+ L 
Sbjct: 125  PIIDRDWLIK-HKEGLILLSGGRMGDVGK-FMLRGNQAQVDQCLEFYQEHFPGSYYLELI 182

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R  +       V LA    LP+VATN+  F++E D++AH++ +A+     +    RP
Sbjct: 183  RTGRPDEENYLHAAVTLATERGLPVVATNDVRFIAESDFDAHEIRVAIHDGFTLVDPKRP 242

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E      
Sbjct: 243  KNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEM----- 297

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +
Sbjct: 298  STEDFLVEKSKQGLEERLEFLFPDPEVRVQKRPEYDERLDIELKVINQMGFPGYFLIVME 357

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 358  FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 417

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P D
Sbjct: 418  CMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPD 477

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++  
Sbjct: 478  PGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 536

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
             P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  +  K     +D
Sbjct: 537  APLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINAKRAKTGLEPID 596

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ +
Sbjct: 597  IASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQS 656

Query: 658  IVVYN--NRKNGKEK-----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N  +RK+G+E      I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  A
Sbjct: 657  GMVDNFIDRKHGREALSYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGA 716

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 717  DMLRRAMGKKNPAEMAKQRSVFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYA 776

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V
Sbjct: 777  LVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPEINSGLYHFHV 836

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D   I Y + AIKGVG      I+EA  +   F  L D C+RVD+KKLNRR+LE L+ +
Sbjct: 837  NDEGEIVYGIGAIKGVGEAPIEAILEARKEGGHFKDLFDLCARVDTKKLNRRILEKLIMS 896

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN- 947
            GA D  G  R  L+ SL    K A    K       ++F    G  +D     + S  N 
Sbjct: 897  GAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMF----GVLADAPEQVEQSYANV 952

Query: 948  ----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                  +  + E+  LG Y +GHP+  Y K I R  G +  ++   T RG       +V+
Sbjct: 953  PPWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVI 1012

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG  T  + +   E   F
Sbjct: 1013 AARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|170727605|ref|YP_001761631.1| DNA polymerase III subunit alpha [Shewanella woodyi ATCC 51908]
 gi|169812952|gb|ACA87536.1| DNA polymerase III, alpha subunit [Shewanella woodyi ATCC 51908]
          Length = 1157

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1048 (40%), Positives = 620/1048 (59%), Gaps = 46/1048 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PSFVHL+VHS +S+ +G   +  I+ K++    PA+A+TD  NL   ++F +    AGI+
Sbjct: 4    PSFVHLRVHSDFSMSDGLAKVKPIIGKVSELGMPAVALTDQTNLCGLVKFYEACHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P+IG    + +    K           + ++ +L    EGY+ L  L+S  YL       
Sbjct: 64   PLIGSDFWVKVPGFDK----------NLCAVTVLAMNNEGYKNLTLLISDAYLRGHIDDR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +  +EG+I+L+GG  G I +A    +    E  +  ++  F DR Y+ L R
Sbjct: 114  AVIDHEWLAKY-SEGIILLSGGRQGDIGQALLKGNLPQVESLVEFYQTHFPDRYYLELLR 172

Query: 189  HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D  R   + V+LA    LP+VATN  +F + E +EAH++ +A++    ++   RP+
Sbjct: 173  TGRPDEERYLHMAVELAEVKGLPVVATNQVVFNTPELFEAHEIRVAISDGFTLADPRRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              + + Y K+  +M  +F D+PEA+ENTV+IA+RC+  +++    LP F   E       
Sbjct: 233  KYSAEQYFKSSEQMCELFEDIPEAIENTVQIAKRCNVTVRLGEYFLPNFPTGEL-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L   +  GLE RL         +      Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  IEDFLVAVSEKGLEERLEFLFPDPEVRAEKRPKYDERLDVELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW K N+IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDFC
Sbjct: 348  IQWGKDNDIPIGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ K++P +P
Sbjct: 408  MDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMVPAEP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   +   +E+  AD  V  L+++ + LEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEVEPALQESYDADEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +  K     V +
Sbjct: 527  PIYCDAEGQNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALQMVNAKKDKLGEERVRI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  ESIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N   RK+G+E +        H  +  +L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIERKHGREAVSYPDSEYQHESLQWVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  G+  NG+   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRGTFEEGSINNGVDGPLSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTHYP EF+AA M+ +MDN +KI     +  +  + ++PP VN   + F V 
Sbjct: 767  VSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVILVDECERMEMPLLPPDVNKGLLKFNVD 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            D   I Y + AIKGVG      I+ A  D PF  L DFC+RVD KKLN+R++E L+ AGA
Sbjct: 827  DEGNIVYGIGAIKGVGEGPVDSILAARKDGPFKDLFDFCARVDLKKLNKRIMEKLICAGA 886

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--SDKITLEKFSVENS 948
            LD  G  R  ++ +L    + A     ++  K E I  H+      SD   +++  VE +
Sbjct: 887  LDTLGPHRAAMMATLPEAIRAA-----DQNAKAEAIGQHDMFGLLNSDPEDIKQQFVECT 941

Query: 949  ----SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ 
Sbjct: 942  PWPDKVWLEGERETLGLYLTGHPINQYLKELKHYTSCRLKDIHPTERGKTMKAAGLVVAT 1001

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++GS++G VT  + +   E   F
Sbjct: 1002 RVMMTKRGSKMGLVTLDDKSARLEVMLF 1029


>gi|85859457|ref|YP_461659.1| DNA polymerase III subunit alpha [Syntrophus aciditrophicus SB]
 gi|85722548|gb|ABC77491.1| DNA polymerase III alpha subunit [Syntrophus aciditrophicus SB]
          Length = 1155

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1048 (41%), Positives = 633/1048 (60%), Gaps = 40/1048 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K  +FVHL VH+ YSLL+G + + +++ K       A+A+TD  N+F  ++F Q AC  G
Sbjct: 2    KIETFVHLHVHTQYSLLDGTIRIKDLISKAKEFGMQAVAMTDHGNMFGTIDFYQAACKEG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIGC+L +  +   + T  G +   T   +++L    +GYQ L++L S  YL D   
Sbjct: 62   IKPIIGCELYVAPKTRFEKT--GGSIGDTARHLLVLAKDYQGYQNLMKLSSLGYL-DGFY 118

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R+    L++   +GLI L+   +G I      +  + A      ++++FG+  +   
Sbjct: 119  YRPRVDKELLKKY-HKGLIALSACLNGEIANYILKDKFKDALLAAENYRQIFGEHNFYLE 177

Query: 187  QRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                G    + +   +++++    +P+ ATN+  +L+ ED E+H+VL+ +     +   D
Sbjct: 178  IMENGLPEQKTANEGLLEISRQLSIPVAATNDCHYLNREDAESHEVLLCIQTGKTLDDSD 237

Query: 245  RPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R + D  Y ++  +M  +F+  PEA+ENT EIA RC+   +     LP+F E   D+ 
Sbjct: 238  RMRFSTDAFYFRSPDDMKQLFNYCPEAVENTKEIADRCNLSFEFGKFYLPKF-EVSSDET 296

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVAD 362
                E+ L   A+ GL  R+      +G   +  Y +RL  EL +I  M F+GYFLIV+D
Sbjct: 297  L---EDRLEKVAIQGLAERMPPIVDERGEEVRGIYEKRLADELKIIKSMGFAGYFLIVSD 353

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            F+ +AK+ NIPVGPGRGS AGS+ AYALTITDIDP+R+ L FERFLNPDR+SMPD DIDF
Sbjct: 354  FVSYAKRMNIPVGPGRGSAAGSLVAYALTITDIDPIRYDLFFERFLNPDRISMPDIDIDF 413

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + R ++IRYV  KYG ++V+QIITFG +QA+A +RDVGRAL +PY +VD + KL+PN 
Sbjct: 414  CPEGRGDIIRYVTEKYGEDKVSQIITFGKMQARAVIRDVGRALNIPYGEVDSIAKLVPN- 472

Query: 483  PAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                +SL  A+  + R +EA   D  + +LL++S+ LEGL RHAS HAAG+VI D PL +
Sbjct: 473  -ILNISLDDAMEMEPRLQEAAKRDEKIRKLLKLSKSLEGLNRHASVHAAGVVISDVPLVE 531

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSL 600
             VP+Y+  + D+  TQF+M  +   GL KFDFLGLKTLT+++ +L F+ +  G  +DL  
Sbjct: 532  RVPLYKSPKDDV-TTQFSMNDLSTVGLTKFDFLGLKTLTVIKNALSFIKEGLGTDLDLKN 590

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P +D +T+ LL+   T G+FQLES GM++ L  M+PDCIED+IAL++LYRPGP++ I  
Sbjct: 591  LPLNDADTFKLLSKGETDGVFQLESDGMKEILVRMKPDCIEDLIALIALYRPGPMNMIPE 650

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RK GK  I+     ++ +LKET GVI+YQEQVMQIA +++ YS+SEAD LR+ MGKK
Sbjct: 651  FIARKQGKTPIIYEIDQLEGILKETYGVILYQEQVMQIASVIAQYSMSEADTLRKVMGKK 710

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               +M+ ++ +F+ GA  NGI +     I+E +  FA YGFNKSH+ AYA+++YQTA++K
Sbjct: 711  DTAKMETERPKFMEGAKANGIPEQKTRKIWEQMETFASYGFNKSHSTAYAMVTYQTAYLK 770

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEF+AA +T E DN +KI K+    ++  I I+PP +N    DF V  NRI + LA
Sbjct: 771  AHYPVEFMAALLTSEKDNRDKIIKYIHVCKEMGIAILPPDINESQRDFSVAGNRIRFGLA 830

Query: 841  AIKGVGTTTARHIMEASADK--PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            AIK VG   A   M +S  K   F S EDFC+R D KK+N+RVLESL+  GA D  G  R
Sbjct: 831  AIKNVG-LGAIDAMISSRQKGGEFLSFEDFCNRTDLKKVNKRVLESLIKCGAFDSTGQRR 889

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR------- 951
             QL+   +NI + +Q  +K++ +K  + F        D    EK S  NSS         
Sbjct: 890  RQLMSEYENIIEISQKRQKDKASKQASFF----DDMEDLGVEEKRSYANSSAAEIQEWDP 945

Query: 952  ---FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN---IRLAAMVVSKQ 1005
                 +E+  LGFY +GHPL+ Y     K+ +    +S   +   +   + LA +V   +
Sbjct: 946  KELLAHEKEFLGFYVTGHPLEGYAS---KISMVANTDSAGILEKGDKEPVSLAGIVSGIR 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  TRK   + +V+  +     +  FFP
Sbjct: 1003 EVFTRKKEIMAYVSLEDLKGATDVIFFP 1030


>gi|300114836|ref|YP_003761411.1| DNA polymerase III subunit alpha [Nitrosococcus watsonii C-113]
 gi|299540773|gb|ADJ29090.1| DNA polymerase III, alpha subunit [Nitrosococcus watsonii C-113]
          Length = 1158

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1054 (42%), Positives = 630/1054 (59%), Gaps = 54/1054 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +PSFVHL++H+ YSL++  + +  ++        PAIA+TD +N+F+ ++F + A AAG+
Sbjct: 2    APSFVHLRLHTEYSLVDSLVRIRPLIQATREAGMPAIAVTDQSNVFAMIKFYRAAQAAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG  + +           G           LL     GY+ L  L+SR Y   Q + 
Sbjct: 62   KPIIGADIFL----------AGSGERSRASRFTLLCQNELGYRHLSGLLSRAYREGQYQG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+   WLQ +  +GLI+L+GG  G + +A    +   A + L  ++ LF  R Y+ L 
Sbjct: 112  IPRLQWDWLQNL-NDGLIVLSGGREGDVGQALLSGNDIQAGRLLERWQALFPGRYYLELH 170

Query: 188  R--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R    G + Y  + V      ++ P+VATN+  FL  +D+EAH+  + +     ++   R
Sbjct: 171  RTGREGEEDYLHAAVALAL-AYDTPVVATNDVRFLRPQDFEAHEARVCIHEGRALNDPRR 229

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R  +   YL+  SEM  +F DLPEALENTVEIARRC+  L +    LP F   E   I 
Sbjct: 230  SRHYSEQQYLRTPSEMAELFVDLPEALENTVEIARRCNLELTLGKYYLPNFPVPEDWSI- 288

Query: 305  KEEENELRNKAVAGLEVRLAQG---AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E  L  +A  GLE RLA+       +      Y  RL  EL VI +M F GYFLIVA
Sbjct: 289  ---EAFLAAEARQGLEQRLAKLYPLETERKAEQSAYEARLAEELAVINQMGFPGYFLIVA 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAKKN IPVGPGRGSGAGS+ AYAL ITD+DPL F L+FERFLNP+R+S+PDFDID
Sbjct: 346  DFIRWAKKNEIPVGPGRGSGAGSLVAYALQITDLDPLAFDLIFERFLNPERVSLPDFDID 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RRD VI YV   YG + V+QIIT+G++ AKA +RDVGR L  PY  VD++ KLIP 
Sbjct: 406  FCMERRDWVIDYVSQHYGRDHVSQIITYGTMAAKAVVRDVGRVLGHPYGFVDQIAKLIPF 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            D    +  +A+A+    R     +  V  L+++++KLEGL R+A  HA G+VI  + L++
Sbjct: 466  DLKMTLD-KALAESEGLRSRYEGEEEVQFLVDLARKLEGLIRNAGKHAGGVVIAPKKLTE 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRG-VKV 596
             VP Y +  +   VTQF+   IE  GL+KFDFLGL+TLT+L  +L  +     Q+G   +
Sbjct: 525  YVPYYCEQGASGVVTQFDKDDIETIGLVKFDFLGLRTLTILDWALQAINRQRTQQGETLL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL+L+P DD ++Y LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  DLALLPMDDSKSYGLLKRCATTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +V  Y NRK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+GY+L EAD+LR
Sbjct: 645  SGMVDDYINRKHGRAQVDYPHPALEPILKPTYGVIVYQEQVMQIAQVLAGYTLGEADLLR 704

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ+  F +GA    + +  A  IF+L+ KFA+YGFNKSH+AAYAVI+Y
Sbjct: 705  RAMGKKKPEEMAKQRAIFTAGAKAREVDEKKATAIFDLMEKFAEYGFNKSHSAAYAVIAY 764

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDN 833
            QTA++K HYP  ++AA ++ +MDN +K+K F ++     + ++PP VN     F   G+ 
Sbjct: 765  QTAYLKAHYPASYMAAVLSADMDNTDKVKAFVEECWAMKLDLLPPDVNASNYLFSAQGET 824

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L AIKGVG      I++A      + +L +FC R+D +K++RRVLE+LV AGALD
Sbjct: 825  AIRYGLGAIKGVGAAALEGIIKAREQHGLYQNLFEFCRRIDLRKISRRVLEALVRAGALD 884

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-------HEKGTFSDKITLEKFSV 945
              G +R  L  SL+     A+   +N +    ++F         E G++   +  +++  
Sbjct: 885  SLGANRATLEASLEAALALAEQHCRNASLGQNDLFGLDLVSEDKEAGSY---VETKEWDE 941

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-------IRLA 998
            E    R   E+  LG Y SGHP+D YK  L+++      E +   R NN       I +A
Sbjct: 942  EQ---RLALEKETLGLYLSGHPIDCYKQELKQIAPCRIAELID--RANNRQNRSQQIMIA 996

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +V S +  K R+G R  ++T  + +   E   F
Sbjct: 997  GLVGSVRTNKARQGGRNAFITLEDGSARLEIKAF 1030


>gi|66044606|ref|YP_234447.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. syringae
            B728a]
 gi|63255313|gb|AAY36409.1| DNA polymerase III alpha subunit [Pseudomonas syringae pv. syringae
            B728a]
          Length = 1173

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1067 (39%), Positives = 624/1067 (58%), Gaps = 69/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173  NRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHN 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA        + Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             +V  + NRK+G+ ++   +P +D       P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 648  GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V D+ RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ L+ 
Sbjct: 826  TVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIR 885

Query: 888  AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929
            +GALD  G                +R  LL +L+   + A+   ++R + H ++F     
Sbjct: 886  SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFV 945

Query: 930  --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              +   +++     + S+++   R   E+  LG Y +GHP+D Y+  +R+       + +
Sbjct: 946  EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998

Query: 988  ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++   +   +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 999  IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|323495347|ref|ZP_08100425.1| DNA polymerase III subunit alpha [Vibrio brasiliensis LMG 20546]
 gi|323310418|gb|EGA63604.1| DNA polymerase III subunit alpha [Vibrio brasiliensis LMG 20546]
          Length = 1159

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1048 (40%), Positives = 619/1048 (59%), Gaps = 45/1048 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A   G++
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPAVALTDFTNLCGLVKFYGTAHGCGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  MQ + +  ++       +  + +L +   GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGA--DFLMQ-SAEFGDE-------LTKLTVLAADNTGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+ +EG+I+L+GG SG I +A    + +V    +  ++  F DR Y+ L R
Sbjct: 114  PVIDKEWLVEL-SEGVILLSGGKSGEIGKALLKGNHKVVSDCVEFYQTHFPDRFYLELTR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   ++LA   ELP+VATN+ + L E  ++AH++ +A+     +    R
Sbjct: 173  TGRADE--ESYLHFALELAEQAELPVVATNDVVILDESLFDAHEIRVAIHDGYTLEDPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   YL++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSAQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             EE   L  K+  GLE RL         +     +Y +RL  EL VI  M F GYFLIV 
Sbjct: 287  -EETEFLVMKSEEGLEERLEFLFPDPKVREERRPEYDERLKVELEVINNMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L   +  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHGFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +    E    D  +  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFKAEPALPELYENDEEIKELIDMCRILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKAPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  +++LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  AIESIPLDDLASFNLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E I        H  +   L  T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDETWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRGTFKEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N     F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLYRFN 824

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V +   I Y + AIKGVG      I+EA +    F  L DFC+R+D KK+N+RV+E L++
Sbjct: 825  VDETGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIY 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFS 944
            AGALD  G  R  ++ SL +  K A    +       ++F            K T  K  
Sbjct: 885  AGALDRLGPHRAAMMASLADAVKAASQHHQAEAFGQSDLFGVLTEAPEEVEHKYT--KVE 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  PWPEKVWLEGERDTLGLYLTGHPINAYIKELGKYTSCRLKDATPTRRDQSVTIAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|330964158|gb|EGH64418.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. actinidiae
            str. M302091]
          Length = 1173

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1067 (39%), Positives = 623/1067 (58%), Gaps = 69/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  + +   PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPAEADELLREWLTVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +R  D       V LA  H  PLVATN+  F+++ D+EAH+  + +     +    R   
Sbjct: 173  NRANDEEHLHAAVALAERHGAPLVATNDVRFINQTDFEAHETRVCIGEGRALDDPRRSHN 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA    G   + Y    Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLMPGDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRERAKVDEAPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             +V  + NRK+G+ ++   +P +D       P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 648  GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825

Query: 829  KVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V  D RI Y L AIKGVG      I +A    PF  L DFC+RVD K++N+R L+ L+ 
Sbjct: 826  TVSYDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDGLIR 885

Query: 888  AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929
            +GALD  G                +R  LL +L+   + A+   ++  + H ++F     
Sbjct: 886  SGALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGGLFV 945

Query: 930  --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              +   +++     + S+++   R   E+  LG Y +GHP+D Y+  +R+       + +
Sbjct: 946  EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998

Query: 988  ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++   +   +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 999  IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|160874613|ref|YP_001553929.1| DNA polymerase III subunit alpha [Shewanella baltica OS195]
 gi|160860135|gb|ABX48669.1| DNA polymerase III, alpha subunit [Shewanella baltica OS195]
 gi|315266854|gb|ADT93707.1| DNA polymerase III, alpha subunit [Shewanella baltica OS678]
          Length = 1157

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1044 (40%), Positives = 614/1044 (58%), Gaps = 38/1044 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      AGI+
Sbjct: 4    PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  MQ       +G+     + ++ ++     GYQ L +++S+ YL  Q    
Sbjct: 64   PIIGA--DFWMQ---VPGFEGE-----LCALTIIAMNNVGYQNLTQIISQAYLRGQVAGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            V I   WL     EG+++L+G   G + +A    +S   E     ++  F DR ++ L R
Sbjct: 114  VVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFLELIR 172

Query: 189  HRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                D  RY    V+ LA    +P+VATN  +FL  ED++AH++ +A+     ++   RP
Sbjct: 173  TGRPDEERYLHMAVI-LAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRP 231

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  +   YL++  EM  +F+D+P AL N+VEIA+RC+  ++++   LP F   +      
Sbjct: 232  KKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYFLPNFPTGDM----- 286

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+ L + +  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +
Sbjct: 287  SIEDFLVDCSRKGLEERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLIVME 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP +
Sbjct: 407  CMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPE 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   ++ +A   +   +E+   D  V  L+++ +KLEG+ R+A  HA G+VI    ++  
Sbjct: 467  PGMTLA-KAFEVEPALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
             P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +  VK     + 
Sbjct: 526  APLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGREPIR 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  I   D   + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ +
Sbjct: 586  IEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645

Query: 658  IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N   RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  A
Sbjct: 646  GMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DMLRRAMGKKKPEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     F V
Sbjct: 766  LVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFTV 825

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+ AG
Sbjct: 826  DDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAG 885

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948
            ALD  G  R  ++ +L    + A    K       ++F        D K    + +    
Sbjct: 886  ALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTPWPD 945

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             +  E E+  LG Y +GHP++ Y   L+       ++   T RG   + A +VV+ +   
Sbjct: 946  KIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATRVML 1005

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++GS++G +T  + +   E   F
Sbjct: 1006 TKRGSKMGLLTLDDKSARLEIMLF 1029


>gi|161504650|ref|YP_001571762.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. arizonae
            serovar 62:z4,z23:-- str. RSK2980]
 gi|160865997|gb|ABX22620.1| hypothetical protein SARI_02771 [Salmonella enterica subsp. arizonae
            serovar 62:z4,z23:--]
          Length = 1144

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1040 (40%), Positives = 621/1040 (59%), Gaps = 54/1040 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K A+   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVH--- 57

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       +  + +L S   GYQ L  L+S+ Y    G     +   WL E+  
Sbjct: 58   NELLGDE-------LTHLTVLASDNTGYQNLTLLISKAYQRGYGASGPIVDRDWLIEL-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R  R  +       
Sbjct: 110  EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSIDE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEALENTVEIA+RC+  +++    LP+F   +        E+ L  K+  GL
Sbjct: 230  MCELFADIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDYLVKKSKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERKKRRPEYDERLNIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   ++ +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLA-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953
             SL +  K A    K       ++F    G  ++    E   +E S          +  +
Sbjct: 884  NSLGDALKAADQHAKAEAIGQTDMF----GVLAE----EPEQIEQSYASCQPWPEQMVLD 935

Query: 954  NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             E+  LG Y +GHP++ Y K I R +G    ++   T RG     A +V++ +   T++G
Sbjct: 936  GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRG 995

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +RIG  T  + +   E   F
Sbjct: 996  NRIGICTLDDRSGRLEVMLF 1015


>gi|126173703|ref|YP_001049852.1| DNA polymerase III subunit alpha [Shewanella baltica OS155]
 gi|125996908|gb|ABN60983.1| DNA polymerase III, alpha subunit [Shewanella baltica OS155]
          Length = 1157

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1044 (40%), Positives = 614/1044 (58%), Gaps = 38/1044 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      AG++
Sbjct: 4    PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHGAGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  MQ       +G+     + ++ ++     GYQ L +++S+ YL  Q    
Sbjct: 64   PIIGA--DFWMQ---VPGFEGE-----LCALTIIAMNNVGYQNLTQIISQAYLRGQVAGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            V I   WL     EG+++L+G   G + +A    +S   E     ++  F DR ++ L R
Sbjct: 114  VVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFLELIR 172

Query: 189  HRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                D  RY    V+ LA    +P+VATN  +FL  ED++AH++ +A+     ++   RP
Sbjct: 173  TGRPDEERYLHMAVI-LAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRP 231

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  +   YL++  EM  +F+D+P AL N+VEIA+RC+  ++++   LP F   +      
Sbjct: 232  KKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYFLPNFPTGDM----- 286

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+ L + +  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +
Sbjct: 287  SIEDFLVDCSRKGLEERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLIVME 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP +
Sbjct: 407  CMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPE 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   ++ +A   +   +E+   D  V  L+++ +KLEG+ R+A  HA G+VI    ++  
Sbjct: 467  PGMTLA-KAFEVEPALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
             P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +  VK     + 
Sbjct: 526  APLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGRKPIR 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  I   D   + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ +
Sbjct: 586  IEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645

Query: 658  IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N   RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  A
Sbjct: 646  GMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DMLRRAMGKKKHEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     F V
Sbjct: 766  LVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFTV 825

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+ AG
Sbjct: 826  DDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAG 885

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948
            ALD  G  R  ++ +L    + A    K       ++F        D K    + +    
Sbjct: 886  ALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTPWPD 945

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             +  E E+  LG Y +GHP++ Y   L+       ++   T RG   + A +VV+ +   
Sbjct: 946  KIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATRVML 1005

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++GS++G +T  + +   E   F
Sbjct: 1006 TKRGSKMGLLTLDDKSARLEIMLF 1029


>gi|254236554|ref|ZP_04929877.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa C3719]
 gi|126168485|gb|EAZ53996.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa C3719]
          Length = 1173

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1064 (40%), Positives = 636/1064 (59%), Gaps = 63/1064 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ +SL++G + +  +   +A    PA+A+TD +N+ S ++F + A  AGI+P
Sbjct: 4    SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I  C  DI +      + +   P   +  + LL   A+GY+ L EL+SR +   Q    +
Sbjct: 64   I--CGADIWLA-----SREEDGP---LSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W++E   EGLI L+    G I  A        AE  L  + ++F +R YV +QR 
Sbjct: 114  IIERDWVKE-AAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             R  D       V LA     PLVATN+  F+ ++D+EAH+  + +     +    RPR 
Sbjct: 173  SRVNDEEHLHAAVALASRCNAPLVATNDVRFIKQDDFEAHETRVCIGEGRTLDDPRRPRT 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+ +EM  +FSDLPEALENTVEIA+RC+  +Q+    LP F       I    
Sbjct: 233  YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKG---YHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            ++ LR+ +  GLE RL +  + K    Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DDYLRHASFEGLEERL-EVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 348  FIKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDF 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI YV + YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP +
Sbjct: 408  CMEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 467

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+   +D     + E++ KLEG+ R    HA G+VI    L+  
Sbjct: 468  VGMTLD-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDF 526

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VD 597
             P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ +    A++G++ V+
Sbjct: 527  SPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVN 586

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 587  IDFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 646

Query: 658  IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 647  GMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGA 706

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G   NGI   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 707  DMLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 766

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+KTH+P  F+AA +T +M N +K+    ++ R   ++I+ P VN     F V
Sbjct: 767  LVSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTV 826

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D+ RI Y L AIKGVG      I E  A+  PF++L DFC RVD K++N+R LE+L+ A
Sbjct: 827  DDDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRA 886

Query: 889  GALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---- 929
            GALD  G                +R  LL +++   + A+   ++  + H ++F      
Sbjct: 887  GALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAE 946

Query: 930  -EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
             E   +++   +++ +++    R + E+  LG Y +GHP+D Y+  +R+   +   E + 
Sbjct: 947  PEADVYANHRKVKELTLKE---RLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVE-LK 1002

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              R     +A ++V+ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1003 PARDTQT-VAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1045


>gi|153829941|ref|ZP_01982608.1| DNA polymerase III subunit alpha [Vibrio cholerae 623-39]
 gi|262161397|ref|ZP_06030507.1| DNA polymerase III alpha subunit [Vibrio cholerae INDRE 91/1]
 gi|148874576|gb|EDL72711.1| DNA polymerase III subunit alpha [Vibrio cholerae 623-39]
 gi|262028708|gb|EEY47362.1| DNA polymerase III alpha subunit [Vibrio cholerae INDRE 91/1]
          Length = 1143

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1037 (41%), Positives = 617/1037 (59%), Gaps = 49/1037 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G++PIIG         
Sbjct: 1    MVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF------ 54

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                T Q +     +  + LL     GY+ L  L+S+ YL    +    I  +WL E   
Sbjct: 55   ----TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HA 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV- 200
            EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L R    D   ES + 
Sbjct: 110  EGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLH 167

Query: 201  --VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNR 257
              + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    RP+  +P  YL++ 
Sbjct: 168  FALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSE 227

Query: 258  SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
            +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F            E+ L  K+  
Sbjct: 228  AEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGM-----AIEDFLVMKSRE 282

Query: 318  GLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
            GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPV
Sbjct: 283  GLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPV 342

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
            GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V
Sbjct: 343  GPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHV 402

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
               YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P DP   +    IA+
Sbjct: 403  AEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAE 462

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
             +  +E   AD  V  L++  + LEG  R+A  HA G+VI    ++   P+Y D   + P
Sbjct: 463  PA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFP 521

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETY 609
            VTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V +  IP DD  ++
Sbjct: 522  VTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSF 581

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNG 667
              L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + +V N  +RK+G
Sbjct: 582  RNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHG 641

Query: 668  KEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            +E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  
Sbjct: 642  REAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 701

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTH
Sbjct: 702  EEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTH 761

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAA 841
            YP EF+AA MT +MDN EK+     + +   + ++PP +N+    F V DN  I Y + A
Sbjct: 762  YPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGA 821

Query: 842  IKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IKGVG      I+EA +    F  L DFC+R+D KK+N+RV+E L+ AGALD  G  R  
Sbjct: 822  IKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAA 881

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFSVEN--SSVRFENE 955
            ++ S+D+  + A    +       ++F    G  +D   ++  +   V      VR E E
Sbjct: 882  MMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQVPEWPEKVRLEGE 937

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ +   T++G+RI
Sbjct: 938  RETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRI 997

Query: 1016 GWVTFSEPAKEYEANFF 1032
            G +T  + +   E   +
Sbjct: 998  GLMTLDDRSGRMEVMLY 1014


>gi|206890698|ref|YP_002248167.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii
            DSM 11347]
 gi|206742636|gb|ACI21693.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii
            DSM 11347]
          Length = 1135

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1046 (40%), Positives = 633/1046 (60%), Gaps = 58/1046 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSLL+GA+ +N ++++      PA+AITD  NLF  +EF +KA  AG++PI
Sbjct: 6    FVHLHIHTEYSLLDGAIKINELIEQAKKYNMPAVAITDHGNLFGVVEFFKKANKAGVKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTP-FPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IGC++ +  Q     T   K P  P   S  + LLV   EGY+ L  LV+R YL +    
Sbjct: 66   IGCEVYVAPQSRFDKTKINKDPGMPEEASFHLTLLVENEEGYKNLTRLVTRSYL-EGFYY 124

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              RI +  L  +  +GL+ L+G   G I     + + + AE    T K +FG+  ++ +Q
Sbjct: 125  KPRIDMELLS-MYNKGLLALSGCLKGEIPYNIVYENIERAENTAKTLKDIFGNNFFLEIQ 183

Query: 188  RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   ++   ++ +++L+   ++P+VATN+  +L + D  AH++L+ +     +  + R 
Sbjct: 184  SNSLPEQTIANRGLIELSKKFDIPVVATNDCHYLHKSDARAHEILLCIQTGKTIKDEKRL 243

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +   D  Y K+  EM S F ++PEAL+NT++IA RC+F L++    LP++   +      
Sbjct: 244  KFQSDEFYFKSPEEMYSAFVEIPEALKNTLQIAERCNFKLRLGEHKLPKYNVPQ----GY 299

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E  L+  A  GL+ R       KG  A+DY +RL+ EL VI  M F+ YFLIV DFI 
Sbjct: 300  TAEEYLKKLAQEGLKERF------KGNVAEDYIKRLEEELKVITEMGFASYFLIVWDFIN 353

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A++ +IPVGPGRGS AGS+ AYAL ITDIDP+++ LLFERFLNP+R+S+PD D+DFC+D
Sbjct: 354  YARRKSIPVGPGRGSAAGSLVAYALKITDIDPIKYGLLFERFLNPERISLPDIDVDFCKD 413

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV   YG +RVA IITFG++ A+A +RDVGRAL +PY+ VD++ K+IP   A 
Sbjct: 414  RREEVIQYVAENYGKDRVAHIITFGTMAARAVVRDVGRALNIPYADVDKIAKMIPF--AC 471

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            P   +A+  + R +E    + +V  L++I+ +LEGL RHAS HAAG+VI   PL  L+P+
Sbjct: 472  PSLEEALNLEPRLKELYNKNETVKELIDIALRLEGLARHASQHAAGVVISPEPLEDLMPL 531

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            Y++   +  ++QF+MK +E  GL+KFDFLGLKTLT++  ++ ++  +G  +DL+ IP DD
Sbjct: 532  YKNSGEETVISQFDMKALEDVGLLKFDFLGLKTLTVIDDTIKYVKAQGKDIDLNNIPLDD 591

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
             ETY LL++  T G+FQLES GM++ L+ M+P   ED+IALV+LYRPGP+ + +V  +  
Sbjct: 592  SETYRLLSSGQTTGVFQLESRGMKELLKRMEPQRFEDLIALVALYRPGPLGSGMVDDFIK 651

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK G   +    P +  +L ET GVI+YQEQVM+IA  ++G+++ +ADVLR+AMGKKI E
Sbjct: 652  RKKGLVPVEYELPELKDILDETYGVILYQEQVMKIANKIAGFTMGQADVLRKAMGKKIPE 711

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M   KE FI GA KNGI    A ++F ++A F +YGFNKSH+AAYA ++Y TA++K HY
Sbjct: 712  LMASLKEEFIQGAQKNGIPYEKAESLFNIMAAFGEYGFNKSHSAAYAYLAYITAYLKAHY 771

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P EF AA+++ EM +  KI KF  + + + I+I  P +N     F V +  I + L A+K
Sbjct: 772  PQEFFAANLSNEMGDTNKIVKFINECKAWGIEIKGPDINESDRAFTVKEKFIRFGLEAVK 831

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG +  + I+     K F S++DF +R+D++K+N++V+ESL+ AGA D           
Sbjct: 832  GVGGSALQCILNEREKKKFTSIDDFLTRLDTRKVNKKVIESLIKAGAFDSL--------- 882

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHE----KGTFSDK---ITLEKFSVENSSVRFENEQ 956
                   Y Q+      N+   I  HE    KG  S +    T E     +++     E+
Sbjct: 883  -------YPQYT----PNQARAIAMHELLSFKGVKSSRGLFFTHENIEAWDNNTVLSEEK 931

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT----IRGNN-----IRLAAMVVSKQQK 1007
              LGFY +GHP+   +P+L K+ +    +   T       NN     I++A +V   + K
Sbjct: 932  SSLGFYLTGHPMKPLRPVLNKINVSTIADIFDTDEDDFVNNNEETHEIKIAGIVEEIKSK 991

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
               KG    ++T  +     E   +P
Sbjct: 992  AKEKGV-TAYITIEDETGRVEVVIYP 1016


>gi|254428613|ref|ZP_05042320.1| DNA polymerase III, alpha subunit subfamily, putative [Alcanivorax
            sp. DG881]
 gi|196194782|gb|EDX89741.1| DNA polymerase III, alpha subunit subfamily, putative [Alcanivorax
            sp. DG881]
          Length = 1166

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1051 (40%), Positives = 618/1051 (58%), Gaps = 40/1051 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL++H+ YSL++G + +  ++      Q PA+A+TD +NLF+ ++F Q A  AGI+
Sbjct: 4    PRFVHLRLHTDYSLVDGVVRVKELIKTCVNQQIPAVAVTDDSNLFALIKFYQNAMNAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P++G  L +          QG T       +  LV    GYQ L  L+SR +  +Q +  
Sbjct: 64   PLMGADLWV----------QG-THIEEPACLSFLVLNEAGYQNLTLLISRAWQTNQDRGR 112

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   W+ E+  EGLI+L+  S G + +       ++A++       ++GDR Y+ +QR
Sbjct: 113  ALVKPEWVAEL-NEGLIVLSAASQGEVGQLLLAEKYELAQQYASWLASVYGDRFYLEVQR 171

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D       V LA    LP+VATN+  FL  ED+EAH+  + +     +    RP+
Sbjct: 172  TSRPGDEDCLHASVTLAGQLGLPVVATNDVRFLRREDFEAHESRVCIHDGNTLDDPRRPK 231

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              + + YLK+  EM  +F+DLPEALENTVEIARRC+  +++    LP F   +   I++ 
Sbjct: 232  KYSEEQYLKSAEEMAELFADLPEALENTVEIARRCTLDIRLGENFLPDFPIPDGMTIEQY 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E    +     L+V L +         +DY  RL FEL++I +M F GYFLIVADFIQW
Sbjct: 292  FEKVSSDGLEERLKVLLDKDDPEYAIKRKDYDDRLRFELDIINQMGFPGYFLIVADFIQW 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             K N +PVGPGRGSGAGS+ AYA+ ITD+DP+ + LLFERFLNP+R+SMPDFD+DFC ++
Sbjct: 352  GKDNEVPVGPGRGSGAGSLVAYAMKITDLDPIGYDLLFERFLNPERVSMPDFDVDFCMEK 411

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD VI YV +KYG + V+QIITFG++ AKA +RDV R    PY   DRL K+IP  P   
Sbjct: 412  RDRVINYVADKYGRDAVSQIITFGTMAAKAVVRDVARVQGKPYGLADRLSKMIPGIPGMT 471

Query: 487  VSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            ++ +A+  +   RE   +D + D+     ++E++ KLEGL R+   HA G+VI    L+ 
Sbjct: 472  LT-KALEQEETLREFLESDENSDKDAANEIMEMAFKLEGLTRNVGKHAGGVVIAPGKLTD 530

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ---KSLDFLAQRGVKVDL 598
              P+Y +      VTQ++   +E AGL+KFDFLGLKTLT++    K+ +    R    DL
Sbjct: 531  FAPLYCEEDGTNLVTQYDKDDVESAGLVKFDFLGLKTLTIIDWAVKAANVKRGREGLDDL 590

Query: 599  SL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++ LL    T  +FQLES GM++ ++ +QPD  EDIIALV+LYRPGP++
Sbjct: 591  VIDHIPLDDGPSFDLLKRGDTTAVFQLESQGMKELIKKLQPDVFEDIIALVALYRPGPLE 650

Query: 657  NIVVYN--NRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  NRK+G+E +    P      ++P+LK + GVI+YQEQVMQIAQ L+GY+L  
Sbjct: 651  SGMVDNFVNRKHGREPLAYPDPQYQHEWLEPILKPSYGVILYQEQVMQIAQELAGYTLGG 710

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 711  ADMLRRAMGKKKPEEMAKQRAIFEEGAKGKGVDPDLAMKIFDLVEKFAGYGFNKSHSAAY 770

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+++YQTAW+K HYP EF+AA+++ +M N +K+  F  + +   +Q++PP VN+    F 
Sbjct: 771  ALVAYQTAWLKVHYPAEFMAATISADMQNTDKVVTFIDECKTMGLQVLPPDVNSCGYRFT 830

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  +  I Y L AIKG+G      I+ A AD   F  L DFC R+D KK+NRR LE++V 
Sbjct: 831  VNPEGDIVYGLGAIKGLGEGPIDAIVSARADGGEFKDLFDFCRRIDLKKINRRSLEAMVR 890

Query: 888  AGALDCFG-----YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            AG LD  G     + R QLL +L +    A    +N      ++F     + +  +  + 
Sbjct: 891  AGVLDKLGPKSSFHDRAQLLATLPDAIAAADQDARNEAAGIMDMFGAVDDSPATAVEWKP 950

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                N   R   E+  LG + +GHP+D Y+  +R+           T +G    +A +VV
Sbjct: 951  ARAWNDETRLNGERDTLGLFLTGHPIDQYEKEVRQFVTARINSLQPTGKGEAATIAGLVV 1010

Query: 1003 S-KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +  +  R G R+ ++T  +     E + F
Sbjct: 1011 ALRITRSKRSGDRMAFITLDDKTGRVEVSVF 1041


>gi|304409577|ref|ZP_07391197.1| DNA polymerase III, alpha subunit [Shewanella baltica OS183]
 gi|307303935|ref|ZP_07583688.1| DNA polymerase III, alpha subunit [Shewanella baltica BA175]
 gi|304352095|gb|EFM16493.1| DNA polymerase III, alpha subunit [Shewanella baltica OS183]
 gi|306912833|gb|EFN43256.1| DNA polymerase III, alpha subunit [Shewanella baltica BA175]
          Length = 1157

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1044 (40%), Positives = 614/1044 (58%), Gaps = 38/1044 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      AGI+
Sbjct: 4    PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  MQ       +G+     + ++ ++     GYQ L +++S+ YL  Q    
Sbjct: 64   PIIGA--DFWMQ---VPGFEGE-----LCALTIIAMNNIGYQNLTQIISQAYLRGQVAGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            V I   WL     EG+++L+G   G + +A    +S   E     ++  F DR ++ L R
Sbjct: 114  VVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFLELIR 172

Query: 189  HRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                D  RY    V+ LA    +P+VATN  +FL  ED++AH++ +A+     ++   RP
Sbjct: 173  TGRPDEERYLHMAVI-LAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRP 231

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  +   YL++  EM  +F+D+P AL N+VEIA+RC+  ++++   LP F   +      
Sbjct: 232  KKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYFLPNFPTGDM----- 286

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+ L + +  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +
Sbjct: 287  SIEDFLVDCSRKGLEERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLIVME 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP +
Sbjct: 407  CMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPE 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   ++ +A   +   +E+   D  V  L+++ +KLEG+ R+A  HA G+VI    ++  
Sbjct: 467  PGMTLA-KAFEVEPALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
             P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +  VK     + 
Sbjct: 526  APLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGRKPIR 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  I   D   + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ +
Sbjct: 586  IEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645

Query: 658  IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N   RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  A
Sbjct: 646  GMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DMLRRAMGKKKPEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     F V
Sbjct: 766  LVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFTV 825

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+ AG
Sbjct: 826  DDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAG 885

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948
            ALD  G  R  ++ +L    + A    K       ++F        D K    + +    
Sbjct: 886  ALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTPWPD 945

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             +  E E+  LG Y +GHP++ Y   L+       ++   T RG   + A +VV+ +   
Sbjct: 946  KIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATRVML 1005

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++GS++G +T  + +   E   F
Sbjct: 1006 TKRGSKMGLLTLDDKSARLEIMLF 1029


>gi|88857962|ref|ZP_01132604.1| DNA polymerase III subunit alpha [Pseudoalteromonas tunicata D2]
 gi|88819579|gb|EAR29392.1| DNA polymerase III subunit alpha [Pseudoalteromonas tunicata D2]
          Length = 1163

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1056 (40%), Positives = 620/1056 (58%), Gaps = 54/1056 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PSFVHL+VHS +S+++G      I+ K A    PA+AI+D  NL   + F      AGI+
Sbjct: 4    PSFVHLRVHSDFSMVDGLAKTKKIVAKAAEYAMPALAISDQMNLCGLVRFYDGCHYAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFP-TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PI+   + +   D           FP  +  + ++    +GY+ L  L+S+ YL      
Sbjct: 64   PIVAADIWLLSPD-----------FPDEMCRLTVIAKNNQGYKNLTLLISKAYLRGHVMH 112

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL E+  EGLI+L+G   G + +A    +  + +     +++ F D  ++ L 
Sbjct: 113  RPMVDRDWLVEL-KEGLILLSGAKDGDLGKALLKGNPSLIDSVSGFYQREFADHYFLELV 171

Query: 188  RHRGYDRYRESQVVQLAYTHE----LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            R    +R +E + + LA  H     +P+VATN  +FL +ED+E H++ +A+     +   
Sbjct: 172  RT---ERPQEEEYLHLAVAHSYQTGIPVVATNEVVFLHKEDFEPHEIRVAIHDGYTLDDN 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP R +   Y K  ++M  +FSD+PEAL N+VEIA+RC+  +Q+    LP +   +   
Sbjct: 229  RRPKRYSEQQYFKTEAQMCEVFSDIPEALANSVEIAKRCNVTIQLGTYFLPDYPTGKL-- 286

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L   +  GLE RL       + +    ++Y +RL  EL+VI +M F GYFLI
Sbjct: 287  ---TIEDFLVKVSEDGLEERLQILFPDPVKRVEQRKEYDERLKIELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL+F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLQFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VD++ KLI
Sbjct: 404  IDFCMDRRDEVIDHVSALYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDKISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   ++ +A   + R  E    D  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 464  PGDPGMTLA-KAFEVEPRLPEIYDTDDEVKELIDKCRILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF----LAQRGVK 595
            +    +Y D     PVTQF+   +E AGL+KFDFLGL+TLT+LQ ++      LA+ G +
Sbjct: 523  TDFAAIYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWAVQMANTRLAREGKE 582

Query: 596  -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++LIP DD +++ LL    T  +FQLES GM+  +  ++PDC ED+IALV+L+RPGP
Sbjct: 583  SIDITLIPLDDPKSFELLLRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAQYQHESLAPILEPTYGIILYQEQVMQIAQVLAGYSL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F SGA  N +   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSTFESGAIGNNVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT WMKTH+P EF+AA M+ +MDN +KI     +     + ++PP VN     
Sbjct: 763  AYALVSYQTLWMKTHFPAEFMAAVMSADMDNTDKIVTLVDECENMKLTLLPPDVNFGEYK 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA  +  PF  L DFC+RVD K++NRRV E L
Sbjct: 823  FTVNLDGAIVYGIGAIKGVGEAPVDAILEARQSGGPFRDLFDFCARVDLKRVNRRVAEKL 882

Query: 886  VFAGALDCFGYSRMQ-----LLQSLDNIQKYAQWVEKNRTNKHENIF---AHEKGTFSDK 937
            + AGALD  G  ++Q     L+ +L +  K A+   K       ++F   A E       
Sbjct: 883  IMAGALDNLGPKKVQGARSILIATLKDAMKSAEQHHKAAAIGQSDLFGLLAEESNDVEHV 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
                 F  +N  +  + E+  LG Y +GHP++ Y+  L+        +   T R  +  +
Sbjct: 943  FVSAPFFTDNEWL--DGERETLGLYLTGHPINQYRKELKHYTAGRLVDVQPTERDVSATV 1000

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            A +V+S +    +KG R G +T  + +   +  FFP
Sbjct: 1001 AGLVISTRVLVNKKGKRWGLITLDDKSARMDVRFFP 1036


>gi|110834019|ref|YP_692878.1| DNA polymerase III subunit alpha [Alcanivorax borkumensis SK2]
 gi|110647130|emb|CAL16606.1| DNA polymerase III, alpha subunit [Alcanivorax borkumensis SK2]
          Length = 1166

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1051 (40%), Positives = 617/1051 (58%), Gaps = 40/1051 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL++H+ YSL++G + +  +      +Q PA+A+TD +NLF+ ++F Q A  AGI+
Sbjct: 4    PRFVHLRLHTDYSLVDGIVRVKELTKTCVNEQIPAVAVTDDSNLFALIKFYQNAMNAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P++G  L +          QG T       +  LV    GYQ L  L+SR +  +Q +  
Sbjct: 64   PLMGADLWV----------QG-THIDEPAYLSFLVLNEVGYQNLTLLISRAWQTNQDRGR 112

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   WL E+  EGLI+L+  S G + +       + A++        +GDR Y+ +QR
Sbjct: 113  ALVKPEWLAEL-NEGLIVLSAASQGEVGQLLLAGKHEQAQQYARWLVSTYGDRFYLEVQR 171

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D       V LA    LP+VATN+  FL  ED+EAH+  + +     +    RP+
Sbjct: 172  TSRPGDEDCLHASVALAEQLGLPVVATNDVRFLRREDFEAHESRVCIHDGNTLDDPRRPK 231

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              + + YLK+  EM  +FSDLPEALENTVEIARRC+  +++    LP F   E   I++ 
Sbjct: 232  KYSEEQYLKSADEMAQLFSDLPEALENTVEIARRCTLDIRLGENFLPDFPIPEGMTIEQY 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E    +     L+V L           +DY  RL FEL++I +M F GYFLIVADFIQW
Sbjct: 292  FEKVSHDGLEERLKVLLDSDDPEYALKRKDYDDRLRFELDIINQMGFPGYFLIVADFIQW 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N +PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLNP+R+SMPDFD+DFC ++
Sbjct: 352  AKDNEVPVGPGRGSGAGSLVAYALKITDLDPIGYDLLFERFLNPERVSMPDFDVDFCMEK 411

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD VI YV +KYG + V+QIITFG++ AKA +RDV R    PY   DRL K+IP  P   
Sbjct: 412  RDRVINYVADKYGRDAVSQIITFGTMAAKAVVRDVARVQGKPYGLADRLSKMIPGVPGMT 471

Query: 487  VSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +S +A+  +   RE   +D + D+     ++E++ KLEGL R+   HA G+VI    L+ 
Sbjct: 472  LS-KALEQEETLREFLESDENSDKEAANEIMEMAFKLEGLTRNVGKHAGGVVIAPGKLTD 530

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ---KSLDFLAQRGVKVDL 598
              P+Y +      VTQ++   +E AGL+KFDFLGLKTLT++    K+ +    R    DL
Sbjct: 531  FAPLYCEEDGTNLVTQYDKDDVESAGLVKFDFLGLKTLTIIDWAVKAANVKRAREGLDDL 590

Query: 599  SL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++ LL    T  +FQLES GM++ ++ ++PD  EDIIALV+LYRPGP++
Sbjct: 591  VIDHIPLDDSPSFDLLKRGDTTAVFQLESQGMKELIKKLKPDVFEDIIALVALYRPGPLE 650

Query: 657  NIVVYN--NRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  NRK+G+E +    P      ++P+LK + GVI+YQEQVMQIAQ L+GY+L  
Sbjct: 651  SGMVDNFVNRKHGREPLAYPDPQYQHEWLEPILKPSYGVILYQEQVMQIAQELAGYTLGG 710

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM+KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 711  ADMLRRAMGKKKPEEMEKQRAIFEEGAKGKGVDAGLAMKIFDLVEKFAGYGFNKSHSAAY 770

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+++YQTAW+K HYP EF+AA+++ +M N +K+  F  + +   +Q++PP VN+    F 
Sbjct: 771  ALVAYQTAWLKVHYPAEFMAATISADMQNTDKVVTFIDECKTMGLQVLPPDVNSCGYRFT 830

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  +  I Y L AIKG+G      I+ A A+   F  L DFC R+D KK+NRR LE++V 
Sbjct: 831  VNPEGDIVYGLGAIKGLGEGPIEAIVTARAEGGEFKDLFDFCRRIDLKKINRRSLEAMVR 890

Query: 888  AGALDCFG-----YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            AG LD  G     + R QLL +L +    A    +N      ++F     + +  +  + 
Sbjct: 891  AGVLDKLGLNSSFHDRAQLLATLPDAIAAADQDARNEAAGIMDMFGAMDDSPATAVEWKP 950

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                N   R   E+  LG + +GHP+D Y+  +++           T +G    +A +VV
Sbjct: 951  ARSWNDETRLNGERDTLGLFLTGHPIDQYEKEVQQFVTARINALQPTAKGEAATVAGLVV 1010

Query: 1003 S-KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +  +  R G R+ ++T  +     E + F
Sbjct: 1011 ALRITRSKRSGERMAFITLDDKTGRVEVSVF 1041


>gi|110804236|ref|YP_687756.1| DNA polymerase III subunit alpha [Shigella flexneri 5 str. 8401]
 gi|110613784|gb|ABF02451.1| DNA polymerase III, alpha subunit [Shigella flexneri 5 str. 8401]
          Length = 1127

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1020 (41%), Positives = 615/1020 (60%), Gaps = 54/1020 (5%)

Query: 42   PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
            PA+AITD  NL   ++F      AGI+PI+G   D ++Q +L            +  + +
Sbjct: 4    PALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQCDLLGDE--------LTHLTV 53

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
            L +   GYQ L  L+S+ Y    G     I   WL E+  EGLI+L+GG  G + R+   
Sbjct: 54   LAANNTGYQNLALLISKAYQRGYGAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLR 112

Query: 162  NSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
             +S + ++ +  +++ F DR ++ L R  R  +       V+LA    LP+VATN+  F+
Sbjct: 113  GNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFI 172

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
               D++AH++ +A+     +    RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+
Sbjct: 173  DSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAK 232

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQD 336
            RC+  +++    LP+F   +        E+ L  +A  GLE RLA        +     +
Sbjct: 233  RCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPE 287

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
            Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+D
Sbjct: 288  YDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLD 347

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 348  PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 407

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
             +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + +  E   AD  V  L+++++
Sbjct: 408  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMAR 466

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 467  KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 526

Query: 577  KTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            +TLT++  +L+ + +R  K     +D++ IP DD +++ +L    T  +FQLES GM+  
Sbjct: 527  RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 586

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKE 684
            ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E+I        H  +  +L+ 
Sbjct: 587  IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKSVLEP 646

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  
Sbjct: 647  TYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAE 706

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT +MDN EK+  
Sbjct: 707  LAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVG 766

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPF 862
               +  +  ++I+PP +N+    F V D+  I Y + AIKGVG      I+EA +    F
Sbjct: 767  LVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYF 826

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
              L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A    K     
Sbjct: 827  RELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIG 886

Query: 923  HENIFAHEKGTFSDKITLEKFSVENS---------SVRFENEQRVLGFYFSGHPLDVY-K 972
              ++F    G  ++    E   +E S          V  + E+  LG Y +GHP++ Y K
Sbjct: 887  QADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLK 938

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             I R +G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 939  EIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 998


>gi|330896075|gb|EGH28296.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. japonica
            str. M301072PT]
 gi|330975384|gb|EGH75450.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aptata
            str. DSM 50252]
          Length = 1173

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1067 (39%), Positives = 623/1067 (58%), Gaps = 69/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173  NRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHN 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA        + Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             +V  + NRK+G+ ++   +P +D       P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 648  GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V D+ RI Y L AIKGVG      I +A  D PF  L DFC+RVD K++N+R L+ L+ 
Sbjct: 826  TVSDDGRILYGLGAIKGVGEGPVEAITDARQDGPFKDLFDFCARVDLKRVNKRTLDGLIR 885

Query: 888  AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929
            +GALD  G                +R  LL +L+   + A+   ++  + H ++F     
Sbjct: 886  SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFV 945

Query: 930  --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              +   +++     + S+++   R   E+  LG Y +GHP+D Y+  +R+       + +
Sbjct: 946  EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998

Query: 988  ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++   +   +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 999  IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|77457343|ref|YP_346848.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens Pf0-1]
 gi|77381346|gb|ABA72859.1| DNA polymerase III alpha subunit [Pseudomonas fluorescens Pf0-1]
          Length = 1173

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1065 (40%), Positives = 624/1065 (58%), Gaps = 65/1065 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F +    AGI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRIKPLVKALTGMGMPAVAVTDQNNMCSLVKFYKNTMGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G         +L ++N  K P   +  I LLV  A+GY+ L EL+SR ++  Q    V
Sbjct: 64   ICGA--------DLWLSN--KDPDGPLSRISLLVMNAQGYRNLTELISRGFIDGQRNGMV 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ E   EGLIML+    G I  A    +   AE     +  +F DR Y+ +QR 
Sbjct: 114  IIEREWVAE-ANEGLIMLSAAKEGEIGMAMIGGNPAEAEALAREWMAVFPDRFYLEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +R  D  +    V LA     PLVATN+  F+ +ED+ AH+  + +     +    R + 
Sbjct: 173  NRPNDEEQLHGAVALADKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKN 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FSDLP+A+ENTVEIA+RC+  +++    LP +   +   I    
Sbjct: 233  YSDQQYLKSAEEMAELFSDLPDAIENTVEIAKRCNIDVKLGKHFLPDYPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RL+        + Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV RA    +   DRL K+IP +
Sbjct: 409  CMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSFGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   HP      + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELAYPHPDYQYEGLQPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G + N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F V
Sbjct: 768  LVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  RI Y L AIKGVG      I EA    PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  NDEGRIVYGLGAIKGVGEGPVEAITEARQAGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887

Query: 890  ALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            ALD  G                +R  LL +++   K A+   + R + H ++F    G F
Sbjct: 888  ALDRLGPYFHDEQKAYQANIDRNRAVLLAAMEEAIKSAEQTARTRDSGHADLFG---GLF 944

Query: 935  ----SDKITLEKFSVENS-SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
                +D   + + + E +   R + E+  LG Y +GHP+D Y+  +R+       + +  
Sbjct: 945  VEEDADVYAVHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFA----RQRIID 1000

Query: 990  IRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++   +   +A M+++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1001 LKPARDTQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045


>gi|238754792|ref|ZP_04616143.1| DNA polymerase III subunit alpha [Yersinia ruckeri ATCC 29473]
 gi|238706952|gb|EEP99318.1| DNA polymerase III subunit alpha [Yersinia ruckeri ATCC 29473]
          Length = 1173

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1055 (40%), Positives = 619/1055 (58%), Gaps = 47/1055 (4%)

Query: 4    YLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            YL+ + P FVHL+VHS YS+++G   +  ++ + AA   PA+A+TD  NL   ++F   A
Sbjct: 11   YLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAVTDFTNLCGLVKFYGSA 70

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              AGI+PIIG   D  +Q ++            +  + +L    +GYQ L  L+S  Y  
Sbjct: 71   HGAGIKPIIGA--DFCVQSDMLGDE--------LAQLTVLAKNNQGYQNLTLLISEAYQR 120

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
              G     I   WL +   EGLI+L+GG  G + +     +    ++ L  +++ F D  
Sbjct: 121  GYGPAGPTIDRDWLIK-HREGLILLSGGRMGDVGKFLVRGNQSQVDQCLDFYQEYFPDSY 179

Query: 183  YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ L R  R  +       V LA    LP+VATN+  F+ E D++AH++ +A+     + 
Sbjct: 180  YLELIRTGRPDEENYLHAAVALATARSLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLV 239

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   + 
Sbjct: 240  DPKRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM 299

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357
                   E+ L  K+  GLE RL          AQ   +Y +RLD EL VI +M F GYF
Sbjct: 300  -----STEDFLVEKSRQGLEERLEFLFPDPEVRAQKRPEYDERLDIELKVINQMGFPGYF 354

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPD
Sbjct: 355  LIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPD 414

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ K
Sbjct: 415  FDVDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK 474

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+P +P   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI   
Sbjct: 475  LVPPEPGMTLE-KAFEAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPT 533

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K  
Sbjct: 534  KITDFAPLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTG 593

Query: 596  ---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RP
Sbjct: 594  LEPIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRP 653

Query: 653  GPIDNIVVYN--NRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V N  +RK+G+E      I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY
Sbjct: 654  GPLQSGMVDNFIDRKHGREALSYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGY 713

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL  AD+LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH
Sbjct: 714  SLGGADMLRRAMGKKNPAEMAKQRSVFEDGAKSQGIDGELAIKIFDLVEKFAGYGFNKSH 773

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+  
Sbjct: 774  SAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGL 833

Query: 826  VDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLE 883
              F V D   I Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE
Sbjct: 834  YHFHVNDEGEIVYGIGAIKGVGEGPIEAMLEARNEGGYFKDLFDLCARVDTKKLNRRILE 893

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
             LV +GA D  G  R  L+ SL    K A    K       ++F    G  +D     + 
Sbjct: 894  KLVMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMF----GVLADAPEQVEQ 949

Query: 944  SVEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRL 997
            S  N       V  + E+  LG Y +GHP+  Y K I R  G    ++   T RG     
Sbjct: 950  SYANVPHWQEQVVLDGERETLGLYLTGHPITQYLKEIERYTGGLRLKDMHPTDRGKMTTA 1009

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +V + +   T++G+RIG  T  + +   E   F
Sbjct: 1010 VGLVTAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1044


>gi|218885238|ref|YP_002434559.1| DNA polymerase III subunit alpha [Desulfovibrio vulgaris str.
            'Miyazaki F']
 gi|218756192|gb|ACL07091.1| DNA polymerase III, alpha subunit [Desulfovibrio vulgaris str.
            'Miyazaki F']
          Length = 1173

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1039 (41%), Positives = 629/1039 (60%), Gaps = 32/1039 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YSLL+GA+ L ++  K      PA AITD  NL+ A+ F       GI+PI
Sbjct: 4    FVHLHCHTEYSLLDGAIRLKDLCAKAVDFGMPAAAITDHGNLYGAVYFYNTCKQFGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129
            IGC++ +      K +   +        +VLL    EGY  L++LVS  +L   G     
Sbjct: 64   IGCEVYVANDHTDKTSELARVRH----HLVLLARDNEGYHNLVKLVSHGFL--HGFHYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+ +  L++  + G+  L+   +G + RA   +    A +    ++ ++    Y+ LQ +
Sbjct: 118  RVDMDLLRQY-SGGITALSACLAGQVPRALLRSGMDDAIRIAREYEAIYPGNFYLELQSN 176

Query: 190  --RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              +  D   E ++++LA    LPLVATN+  +L   D EAHDVL+ +     V  + R R
Sbjct: 177  GLKEQDELNE-KLIELADHTGLPLVATNDCHYLEASDVEAHDVLLCIQTQAKVDDERRMR 235

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + Y K+  EM   F+ +P+A+ NT  IA +C+   +    + P +   E   +   
Sbjct: 236  FETKELYYKSPEEMAKAFAHVPDAVANTGRIAEQCAVKFEFGKYVFPVYALPEGMTL--- 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+E R  +  GL+ RL +           Y +RL+ EL+VI +M F GYFLIV DFI W
Sbjct: 293  -EDEFRRLSREGLKRRLERHPNRDTIDHDLYWKRLELELDVIGQMGFPGYFLIVQDFINW 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N IPVGPGRGS AGS+ A++L IT++DP+ ++LLFERFLN +R+SMPD D+DFC+ R
Sbjct: 352  AKDNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYNLLFERFLNIERVSMPDIDVDFCERR 411

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVIRYV  KYG + VAQI TFG ++AKA +RDVGRAL M +++ DR+ KL+P D    
Sbjct: 412  RTEVIRYVGEKYGEDMVAQITTFGKMKAKAVVRDVGRALGMTFAETDRIAKLVPEDLKMT 471

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            V  +AI  +         DP + +LL++S +LEGL RHASTHAAG+V+ DRP+ + +P+Y
Sbjct: 472  VK-KAIDAEPDLAALYKTDPQIRKLLDVSMRLEGLSRHASTHAAGVVVSDRPMREYLPLY 530

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            R  + ++ VTQF+MK +EK GL+KFDFLGL+T+TL+Q SLD +A++G    DL  +  DD
Sbjct: 531  RGKKGEI-VTQFDMKMVEKVGLVKFDFLGLRTMTLVQDSLDEIARQGKTPPDLDTLALDD 589

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
             ETY L +   T GIFQ+ESSGMRQ L  ++P C +D+IA+++LYRPGP+ + +V  +  
Sbjct: 590  AETYELYSRGDTDGIFQVESSGMRQYLRMLKPSCFDDVIAMLALYRPGPLGSGMVDEFIK 649

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+  +    P ++  L++T GVI+YQEQVMQIAQ+ +GY+L  AD+LRRAMGKK  E
Sbjct: 650  RKHGEVPVTYPLPSLEDCLRDTYGVIVYQEQVMQIAQIAAGYTLGGADLLRRAMGKKNAE 709

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM +Q+ +F+ GA KNG+ K  A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K H+
Sbjct: 710  EMGQQRIKFVEGAQKNGVPKATADEIFDLMEKFAEYGFNKSHSAAYALISYYTAYLKVHF 769

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P EF+AA +T EM N +K+ K+    +   I ++ P+V     +F V +  I + L  IK
Sbjct: 770  PTEFMAALLTSEMGNQDKLLKYVAACKDMGIAVLQPNVQASRREFTVHEGAIVFGLGGIK 829

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG    R I++A  +   F SL D C RV+ +K+ +RVLESL+  GA DC G +R  +L
Sbjct: 830  NVGDEAIREIVDAREEGGVFASLLDLCMRVNLRKVTKRVLESLIKGGACDCLGCTRAGML 889

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITL---EKFSVE---NSSVRFEN 954
             +LDN+   AQ   K++ +   ++F    E+      I     E+ + E   +  +RFE 
Sbjct: 890  AALDNVVSKAQKRLKDKESNQVSLFTMVPEEPAVCPGIGFDCEEQQAQEWDDDQKLRFEK 949

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E   LGF+ + HPL  Y+  L ++ +   EE+     G +++ A +V   ++  T+KG+R
Sbjct: 950  E--ALGFFLTSHPLQPYRKELFRLRLTPLEETRDMAPGMSLKTAVLVTGIKEHMTKKGAR 1007

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + ++   +     E  FFP
Sbjct: 1008 MAFLQVEDLTASGECVFFP 1026


>gi|217974045|ref|YP_002358796.1| DNA polymerase III subunit alpha [Shewanella baltica OS223]
 gi|217499180|gb|ACK47373.1| DNA polymerase III, alpha subunit [Shewanella baltica OS223]
          Length = 1157

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1044 (40%), Positives = 615/1044 (58%), Gaps = 38/1044 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      AGI+
Sbjct: 4    PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  MQ       +G+     + ++ ++     GYQ L +++S+ YL  Q    
Sbjct: 64   PIIGA--DFWMQ---VPGFEGE-----LCALTIIAMNNIGYQNLTQIISQAYLRGQVAGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            V I   WL     EG+++L+G   G + +A    +S   E     ++  F DR ++ L R
Sbjct: 114  VVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFLELIR 172

Query: 189  HRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                D  RY    V+ LA    +P+VATN  +FL  ED++AH++ +A+     ++   RP
Sbjct: 173  TGRPDEERYLHMAVI-LAQDKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRP 231

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  +   YL++  EM  +F+D+P AL N+VEIA+RC+  ++++   LP F   +      
Sbjct: 232  KKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYFLPNFPTGDM----- 286

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+ L + +  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +
Sbjct: 287  SIEDFLVDCSRKGLEERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLIVME 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP +
Sbjct: 407  CMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPE 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   ++ +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI    ++  
Sbjct: 467  PGMTLA-KAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
             P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +  V+     + 
Sbjct: 526  APLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVRNGRKPIR 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  I   D   + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ +
Sbjct: 586  IEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645

Query: 658  IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N   RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  A
Sbjct: 646  GMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DMLRRAMGKKKPEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     F V
Sbjct: 766  LVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFTV 825

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+ AG
Sbjct: 826  DDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAG 885

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948
            ALD  G  R  ++ +L    + A    K       ++F        D K    + +    
Sbjct: 886  ALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTPWPD 945

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             +  E E+  LG Y +GHP++ Y   L+       ++   T RG   + A +VV+ +   
Sbjct: 946  KIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKIAKAAGLVVATRVML 1005

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++GS++G +T  + +   E   F
Sbjct: 1006 TKRGSKMGLLTLDDKSARLEIMLF 1029


>gi|307718499|ref|YP_003874031.1| DNA polymerase III subunit alpha [Spirochaeta thermophila DSM 6192]
 gi|306532224|gb|ADN01758.1| DNA polymerase III subunit alpha [Spirochaeta thermophila DSM 6192]
          Length = 1136

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1038 (41%), Positives = 617/1038 (59%), Gaps = 46/1038 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G++   +++ ++      A+A+TD  NLF  +EF +KA AAG+ PI
Sbjct: 6    FVHLHVHSDYSLLDGSIKTGDLVKRVKELDMDAVALTDHGNLFGMIEFYKKARAAGVTPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--------L 122
            +GC+  +  +            +     ++LL     GY  L++LV+  YL        +
Sbjct: 66   LGCECYVAPESRTLKDQDHAANY----HLILLAENYTGYLNLLKLVTESYLTGFYYKPRI 121

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181
            D G          L     EGLI L+    G I           A +R   ++ LFG DR
Sbjct: 122  DDG----------LLAAHHEGLIALSSCLGGEIPSLILGRQIDKARERARFYRDLFGPDR 171

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ LQ H   ++ R ++ +V+L+   ++PLVATN+  +L  E  EAH+VL+ +  +  +
Sbjct: 172  FYLELQDHGLPEQKRVNKTLVELSKELDIPLVATNDVHYLLREHAEAHEVLLCIGTNKKL 231

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            S +DR R  T + YLK+  EM  +F D+PEALENTV IA RC+F +    P+LP +   E
Sbjct: 232  SDQDRMRFETQEFYLKSPEEMARLFEDIPEALENTVRIAERCAFEIPFPGPLLPEYHIPE 291

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYF 357
              D     E  LR+    GL+ R         YH   ++ R+R D EL++I +M F+GYF
Sbjct: 292  GFD---SPEAYLRHLTYEGLKKR---------YHQITREIRERADLELSIIIQMGFTGYF 339

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DF+ +AK+  IPVGPGRGSGAGS+ AYAL IT+IDPL++ LLFERFLNP+R+SMPD
Sbjct: 340  LIVWDFVHFAKEQGIPVGPGRGSGAGSIVAYALGITNIDPLKYGLLFERFLNPERISMPD 399

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC  RR+EVI YV  KYG +RVAQIITFG+L+ KA ++DV R L +P+++ + L K
Sbjct: 400  FDIDFCYARREEVIDYVTRKYGKDRVAQIITFGTLKPKAVIKDVARVLGIPFAEANELTK 459

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            L+ +  A  V  +AI  + R   ARLA  D +  RL +I   L+GL RHASTHAAGIVIG
Sbjct: 460  LMGD--ASSVE-EAIQREPRL--ARLAEEDETYTRLFQIGSVLQGLSRHASTHAAGIVIG 514

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
               L+  VP+YRD ++    TQ++M+ +E  GL+K DFLGLKTLTL+  + + +      
Sbjct: 515  REALTNYVPLYRDPKTGDISTQYSMEHLEDCGLVKMDFLGLKTLTLITHTEELVRTHTPD 574

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             D   IP DD +T+ LL    +  +FQ ES GM+  L   +P+ IE++IAL +LYRPGP+
Sbjct: 575  FDTERIPEDDAQTFQLLAEGKSTCVFQFESEGMQNILRRAKPESIEELIALNALYRPGPM 634

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  +   K G+ KI   HP ++P+LKET GVI+YQEQVMQIAQ ++GY+L  AD+LRR
Sbjct: 635  QFIDQFIEAKQGRRKITYPHPDLEPILKETYGVIVYQEQVMQIAQKIAGYTLGGADILRR 694

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  E M K+KE+FI+GA   G S+  A  +F+LL  FA YGFNKSHAAAY+V++Y+
Sbjct: 695  AMGKKKPEVMAKEKEKFITGAVAQGYSRQFAEELFDLLIPFAGYGFNKSHAAAYSVLAYK 754

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYP EF+AA++T E+ N +K+ ++  + R   I+++PP +N     F V D +I
Sbjct: 755  TAYLKAHYPAEFMAANLTNEIGNPDKLAQYIGETRAMGIEVLPPDINASERYFTVRDGKI 814

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             Y L  IK VGT     I+    + PF S  DF  RVD + +NR+V+E+ + AG  D   
Sbjct: 815  VYGLVGIKNVGTAAVEEILGKRKEGPFTSFIDFLFRVDLRTVNRKVIETCIQAGVFDSLH 874

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R +L+ +L+ +  +   +++ +      +F   +    ++         ++  +   E
Sbjct: 875  PNRAELMHNLEALLAHVNRIKEQQEASQGFLFEETETQIREEFQFTPVEDWDTMEKLRYE 934

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            + +LGFYFS HPLD  + I  K           T      +L  ++ + ++  T+KG+R+
Sbjct: 935  RELLGFYFSSHPLDHLREIWEKGVNLDLSHPERTDPSRTYQLMGVLKTVREITTQKGNRM 994

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             + T  +     EA FFP
Sbjct: 995  AFGTIEDYRGSIEAVFFP 1012


>gi|119471146|ref|ZP_01613678.1| DNA polymerase III subunit alpha [Alteromonadales bacterium TW-7]
 gi|119445802|gb|EAW27084.1| DNA polymerase III subunit alpha [Alteromonadales bacterium TW-7]
          Length = 1163

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1065 (41%), Positives = 612/1065 (57%), Gaps = 70/1065 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS +S+++G      I+ K    + PAIAITD  N    + F      AGI
Sbjct: 3    APDFVHLRVHSDFSMVDGLAKTKPIVAKAQELEMPAIAITDQMNFCGLVRFYGATHNAGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTP-FPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQG 125
            +PI+G    +            ++P FP  P  I +L     GY+ +  L+S  Y     
Sbjct: 63   KPIVGADFWL------------RSPEFPDEPCRITILAKDNVGYKNITLLISEAYQRGHV 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   WL     EGLI+L+G   G + +A   N+  V E  +  +K+ F +  Y+ 
Sbjct: 111  FHRPVIDREWLAN-HKEGLIILSGAKDGDLGKALLKNNPGVIESVISFYKQHFSEHYYLE 169

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R +R  +       V+LA   +LP+VATN  +FL  E++EAH++ +A+     +  K 
Sbjct: 170  LVRTNRPLEEDYLHMAVELAAKEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDKR 229

Query: 245  RP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP R + + YLK   +M  +FSD+PEAL+NTVEIA+RC+  +++    LP +     +  
Sbjct: 230  RPKRFSEEQYLKTPEQMAELFSDIPEALQNTVEIAKRCNVTVKLGEYFLPDYPTGSLN-- 287

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  L   +  GLE RL         +     +Y +RL  EL VI +M F GYFLIV
Sbjct: 288  ---IDEFLVKVSEDGLEERLQFLFPDEEDRKVKRVEYDERLAVELGVINQMGFPGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 345  MEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP
Sbjct: 405  DFCMDRRDEVIDHVSALYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   ++ +A   + R +EA   D  V  L+++ + LEG  R+A  HA G+VI    ++
Sbjct: 465  GDPGMTLA-KAFEVEPRLQEAYDGDSEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTIT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL---AQRGVK-- 595
                +Y D     PVTQF+   +E AGL+KFDFLGL+TLT+LQ ++D      QR  K  
Sbjct: 524  DFAALYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWAVDMTNVRMQREGKDP 583

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD++ IP DD ++  LL    T  +FQLES GM+  +  ++PDC ED+IALV+L+RPGP+
Sbjct: 584  VDINTIPLDDKKSIELLLRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGPL 643

Query: 656  DNIVVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
             + +V N  +RK G+E+I          S+ P++DP    T G+I+YQEQVMQIAQ+L+G
Sbjct: 644  QSGMVDNFIDRKLGREEISYPDAQYQHESLKPILDP----TYGIILYQEQVMQIAQVLAG 699

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            Y+L  AD+LRRAMGKK  EEM KQ+  F  GA  NGI   +A+ IF+L+ KFA YGFNKS
Sbjct: 700  YTLGGADMLRRAMGKKKPEEMAKQRSTFEDGARNNGIDGELAIKIFDLVEKFAGYGFNKS 759

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT WMKTH+P EF+AA M+ +MDN +KI     +     + ++PP VN  
Sbjct: 760  HSAAYALVSYQTLWMKTHHPAEFMAAVMSADMDNTDKIVILVDECENMKLTLLPPDVNAG 819

Query: 825  CVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVL 882
               F V     I Y + AIKGVG      I+EA A   PF  L DFC+RVD K+LN+RV 
Sbjct: 820  EFKFTVNLQGEIVYGIGAIKGVGEAPVDAILEARAKGGPFKDLFDFCARVDLKRLNKRVT 879

Query: 883  ESLVFAGALDCFGYSRMQ-----LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            E L++AGALD  G  + Q     LL SL +  + A    K       ++F          
Sbjct: 880  EKLIYAGALDKLGPEKNQAGRAILLASLKDAMRAADQHNKAEQLGQSDLFGL-------- 931

Query: 938  ITLEKFSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
            +  E   VE + ++          E E+  LG Y +GHP++ Y+  LR        +   
Sbjct: 932  LATEPDEVEQAFIKATGLTDNEWLEGEKDTLGLYLTGHPINQYRKELRYYTSGKLVDLQP 991

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            T R      A +V+S +    +KG+R G +T  + +   +   FP
Sbjct: 992  TNRDVLSTAAGLVISARTLINKKGNRWGLITLDDKSARIDVRLFP 1036


>gi|238759934|ref|ZP_04621088.1| DNA polymerase III subunit alpha [Yersinia aldovae ATCC 35236]
 gi|238701841|gb|EEP94404.1| DNA polymerase III subunit alpha [Yersinia aldovae ATCC 35236]
          Length = 1171

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1056 (40%), Positives = 621/1056 (58%), Gaps = 49/1056 (4%)

Query: 4    YLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            YL+ + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A
Sbjct: 9    YLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSA 68

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
             +AGI+PIIG    +          Q +     +  + +L    +GYQ L  L+S  Y  
Sbjct: 69   HSAGIKPIIGADFYV----------QSEILGDELAHLTVLARNNDGYQNLTLLISEAYQR 118

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDR 181
              G     I   WL +   EGLI+L+GG  G + + F    +Q      L F ++ F D 
Sbjct: 119  GYGAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGK-FMLRGNQAQVDLCLDFYQEHFPDS 176

Query: 182  LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ L R  R  +       V LA    LP+VATN+  F+ E D++AH++ +A+     +
Sbjct: 177  YYLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTL 236

Query: 241  SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +
Sbjct: 237  VDPKRPKNYSPQQFMRDEEQMCELFADIPEALFNSVEIAKRCNVTIRLGEYFLPQFPTGD 296

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGY 356
                    E+ L  K+  GLE R+          AQ   +Y +RL+ EL VI +M F GY
Sbjct: 297  M-----STEDFLVEKSKQGLEERMELLFPDPEERAQKRPEYDERLEIELKVINQMGFPGY 351

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMP
Sbjct: 352  FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 411

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ 
Sbjct: 412  DFDVDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 471

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KL+P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI  
Sbjct: 472  KLVPPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAP 530

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
              ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K 
Sbjct: 531  TKITDFAPLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKT 590

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+R
Sbjct: 591  GLEPIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFR 650

Query: 652  PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PGP+ + +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSG
Sbjct: 651  PGPLQSGMVDNFIDRKHGREAISYPDIEWQHECLKPVLEPTYGIILYQEQVMQIAQVLSG 710

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YSL  AD+LRRAMGKK   EM KQ+  F  GA + GI   +A+ IF+L+ KFA YGFNKS
Sbjct: 711  YSLGGADMLRRAMGKKNPAEMAKQRSVFEDGAKEQGIDGELAIKIFDLVEKFAGYGFNKS 770

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+ 
Sbjct: 771  HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSG 830

Query: 825  CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVL 882
               F V D   I Y + AIKGVG      +++A  +   F  L D C+RVD+KKLNRR+L
Sbjct: 831  LYHFHVNDEGEIVYGIGAIKGVGEAPIEAMLDARKEGGYFKELFDLCARVDTKKLNRRIL 890

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E LV +GA D  G  R  L+ SL    K A    K       ++F    G  +D     +
Sbjct: 891  EKLVMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMF----GVLADAPEQVE 946

Query: 943  FSVEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIR 996
             S  N       +  + E+  LG Y +GHP+  Y K I R  G    ++   T RG    
Sbjct: 947  QSYANVPLWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTT 1006

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 1007 AVGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|148981148|ref|ZP_01816310.1| DNA polymerase III subunit alpha [Vibrionales bacterium SWAT-3]
 gi|145960975|gb|EDK26300.1| DNA polymerase III subunit alpha [Vibrionales bacterium SWAT-3]
          Length = 1159

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1050 (40%), Positives = 625/1050 (59%), Gaps = 49/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A   G++
Sbjct: 4    PKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHGCGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  MQ + +  ++       +  + +L S  +GY  L  L+S+ YL    +  
Sbjct: 64   PIIGA--DFLMQ-SPEFGDE-------LTKLTVLASDNKGYNNLTLLISKAYLRGHIQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+G   G I +A    +  +    +  +K  F DR Y+ L R
Sbjct: 114  PVIDKEWLIE-NAEGLIILSGAKEGEIGKALLKGNRDLVASSVEFYKTHFPDRFYLELIR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   ++LA   +LP+VATN  +FL+E+ ++AH++ +A+     +    R
Sbjct: 173  TGRADE--ESYLHFALELAEQQDLPVVATNEVVFLTEDLFDAHEIRVAIHDGYTMVDPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   YL++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSAQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTEGL---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RLA        +     +Y +RL  EL V+  M F GYFLIV 
Sbjct: 287  -AIEDFLIKKSEEGLERRLAFLFPDEKERAERRPEYDERLKVELEVVNNMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID
Sbjct: 346  EFIQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDID 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +    +A+ +   E    D  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLEKAFLAEPA-LPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V
Sbjct: 525  FAPIYADAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKEGKEPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  +++LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIESIPLDDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E +        H  +   L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 645  SGMVDNFIDRKHGREAVSYPDETWQHESLKDTLEPTYGIILYQEQVMQIAQILAGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRGTFKEGAEANGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVIGLVDECFRMKLKLLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+  I Y + AIKGVG      I+EA +    F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDDGAIVYGIGAIKGVGEGPIEAIIEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944
            +GALD  G  R  ++ SL +  K A       +    ++F    G  +D   ++  +   
Sbjct: 885  SGALDRLGPHRAAMMASLADAVKAASQYHHAESFGQSDMF----GVLTDAPEEVEHKYTQ 940

Query: 945  VENSS--VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            V   S  V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V+
Sbjct: 941  VPRWSEKVWLEGERETLGLYLTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAGLVI 1000

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG +T  + +   E   F
Sbjct: 1001 AARVMTTKRGTRIGLMTIDDRSGRMEVMLF 1030


>gi|254491862|ref|ZP_05105041.1| DNA polymerase III, alpha subunit subfamily, putative [Methylophaga
            thiooxidans DMS010]
 gi|224463340|gb|EEF79610.1| DNA polymerase III, alpha subunit subfamily, putative [Methylophaga
            thiooxydans DMS010]
          Length = 1161

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1043 (41%), Positives = 625/1043 (59%), Gaps = 31/1043 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL +H+ YSL++G + +  ++  +A    PA+AITD +NLF+A++    A  AG+
Sbjct: 2    SKQFVHLHLHTDYSLIDGLVRVKPLVKAVAEAGMPAVAITDQHNLFAAVKLFNAAMQAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+G  L +    + K + +           VLL    EG+  L  L+SR Y+  Q   
Sbjct: 62   KPILGADLRLKDPSDAKSSTR----------FVLLCMNLEGFHNLSRLLSRAYMEGQQLG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL E  ++GLI L+GG  G + +A   +     +++L  +++LF DR Y+ L 
Sbjct: 112  VPMIEADWL-EGQSDGLICLSGGREGVLGKALLNHQKDEIDQQLNFWQQLFPDRFYLELI 170

Query: 188  RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R    D  R  ++ V LA   ++P+VA+N+  FL  + +EAH+  + +     +    RP
Sbjct: 171  RTGREDEERFLRLAVALAGDRQIPVVASNDVRFLQPQHFEAHEAKVCIHDGRQLDDPRRP 230

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R   +H YL++  +M+++F D+PEA+ENTVEIA+RC+  L +    LP F   E   I +
Sbjct: 231  RHYSEHQYLRSAEDMIALFDDIPEAIENTVEIAKRCNLQLSLGEHYLPDFPVPEGMTIDE 290

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                E        LEV L   +  +  +   Y +RL  EL+VI  M F GYFLIVADFIQ
Sbjct: 291  FFSEESFKGLAERLEV-LFPDSTQREANKDRYEERLQIELDVINSMGFPGYFLIVADFIQ 349

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+S+PDFD+DFC D
Sbjct: 350  WAKNNAVPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSLPDFDVDFCMD 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV   YG + V+QIITFG++ AKA LRDVGR L  PY  VD+L KL+P +   
Sbjct: 410  GRDRVIDYVSQHYGRDHVSQIITFGTMAAKAVLRDVGRVLGHPYGFVDQLAKLVPFELKM 469

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++ +A+  +   +E    +  V  L++++ +LEGL R+   HA G+VI  + L++  P+
Sbjct: 470  TLT-KALEQEPLLKERYNKEEEVKTLIDLALQLEGLTRNVGKHAGGVVIAPKVLTEYTPL 528

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDLSL 600
            Y +      V+QF+   +E  GL+KFDFLGLKTLT++  +++ +     A+   K+D++ 
Sbjct: 529  YCEHNGAGLVSQFDKDDVESVGLVKFDFLGLKTLTVIDWAMNNVRTLLPAEEADKIDITN 588

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  T+ LL    T  +FQLES GM++ ++ +QPD  EDIIALV+L+RPGP+ + +V
Sbjct: 589  LPLDDKPTFDLLKRCETTAVFQLESRGMKELVKRLQPDNFEDIIALVALFRPGPLQSGMV 648

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + NRK+G+ K+   H  ++P+L  T GVI+YQEQVMQIAQ+L+GYSL  AD+LRRAMG
Sbjct: 649  DDFVNRKHGRAKVDYPHQDLEPVLSPTYGVIVYQEQVMQIAQILAGYSLGGADMLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM KQ++ F+ GA+   I +  A  IF+L+ KFA+YGFNKSH+AAYA+++YQTAW
Sbjct: 709  KKKPEEMAKQRQIFLEGAAGRDIGEKEAGPIFDLMEKFAEYGFNKSHSAAYALVAYQTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYY 837
            +K HYP  F+AA ++ +MDN +K+     + R   + + PP VN   + F V D   I Y
Sbjct: 769  LKAHYPSAFMAAVLSADMDNTDKVVGLIDECRDMKLTVQPPDVNHSKIKFTVEDGTTIRY 828

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIKGVG +    I+ E    + F+SL DFC RVD +K+NRRV+ESLV AGALD  G 
Sbjct: 829  GLGAIKGVGESALAGIVSEREQGEAFESLYDFCRRVDMRKINRRVMESLVKAGALDSLGG 888

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSSVRFENE 955
             R  L  SL    + A    +++ +   ++F     + S D   LE  +        ++E
Sbjct: 889  HRASLEASLSKAMQIADQHRRDKDSGQNDLFGLTPDSDSADDEPLEIAAEWAEQQLLQSE 948

Query: 956  QRVLGFYFSGHPLDVYKP-----ILRKMGIKGYEESVATIRGNNIRL-AAMVVSKQQKKT 1009
            +  LG Y SGHP+D Y+      I +K+      ES    R     L A ++V+ +  K+
Sbjct: 949  KETLGLYLSGHPIDRYEAELAEFIPKKINELDAPESKGYQRNEKPMLTAGLIVAIRTMKS 1008

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
            + G R+ ++T  + +   E   F
Sbjct: 1009 KNGGRMAFITLDDQSARLEVRVF 1031


>gi|152987648|ref|YP_001346883.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PA7]
 gi|150962806|gb|ABR84831.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa PA7]
          Length = 1185

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1064 (40%), Positives = 634/1064 (59%), Gaps = 63/1064 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ +SL++G + +  +   +A    PA+A+TD +N+ S ++F + A  AGI+P
Sbjct: 16   SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 75

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I  C  DI +      + +   P   +  + LL   A GY+ L EL+SR +   Q    +
Sbjct: 76   I--CGADIWLA-----SREEDGP---LSRLSLLAMNARGYRNLTELISRGWSEGQRNGEI 125

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W++    EGLI L+    G I  A        AE  L  + ++F +R YV +QR 
Sbjct: 126  IIERDWVK-AAAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 184

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             R  D       V LA     PLVATN+  F+ +ED+EAH+  + +     +    RPR 
Sbjct: 185  SRVNDEEHLHAAVALASRCNAPLVATNDVRFIRQEDFEAHETRVCIGEGRTLDDPRRPRT 244

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+ +EM  +FSDLPEALENTVEIA+RC+  +Q+    LP F       I    
Sbjct: 245  YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 300

Query: 308  ENELRNKAVAGLEVRLAQGAIAKG---YHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            ++ LR+ +  GLE RL +  + K    Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 301  DDYLRHASFEGLEERL-EVLLPKDTPDYEARRQVYVDRLNFELDIIIQMGFPGYFLIVMD 359

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 360  FIKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDF 419

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI YV + YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP +
Sbjct: 420  CMEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 479

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+   +D     + E++ KLEG+ R    HA G+VI    L+  
Sbjct: 480  VGMTLE-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDF 538

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VD 597
             P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ +    A++G++ V+
Sbjct: 539  SPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVN 598

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 599  IDFIPLDDKPTYALLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 658

Query: 658  IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 659  GMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGA 718

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G   NGI   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 719  DMLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 778

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+KTH+P  F+AA +T +M N +K+    ++ R   ++I+ P VN     F V
Sbjct: 779  LVSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTV 838

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D+ RI Y L AIKGVG      I E  A+  PF++L DFC RVD K++N+R LE+L+ A
Sbjct: 839  DDDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRA 898

Query: 889  GALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---- 929
            GALD  G                +R  LL +++   + A+   ++  + H ++F      
Sbjct: 899  GALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAE 958

Query: 930  -EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
             E   +++   +++ +++    R + E+  LG Y +GHP+D Y+  +R+   +   E + 
Sbjct: 959  PEADVYANHRKVKELTLKE---RLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVE-LK 1014

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              R     +A ++V+ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1015 PARDTQT-VAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1057


>gi|320155607|ref|YP_004187986.1| DNA polymerase III subunit alpha [Vibrio vulnificus MO6-24/O]
 gi|319930919|gb|ADV85783.1| DNA polymerase III alpha subunit [Vibrio vulnificus MO6-24/O]
          Length = 1143

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1039 (41%), Positives = 623/1039 (59%), Gaps = 53/1039 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G   +  ++ ++AA   PA+A+TD  NL   ++F   A   GI+PIIG   D  MQ 
Sbjct: 1    MVDGINKVPALVKQVAALGMPAMALTDFTNLCGLVKFYGAAHGNGIKPIIGA--DFKMQ- 57

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            + +  ++       +  + +L +   GY+ L  L+S+ YL    +    I   WL E+ +
Sbjct: 58   SPEFGDE-------LTQLTVLAADNTGYKNLTLLISKAYLRGHVQHQPVIDKEWLIEL-S 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGLI+L+G  +G I +A    + ++ E  +  +++ F DR Y+ L R  R  +       
Sbjct: 110  EGLIILSGARNGEIGKALLKGNQKLVESCVAFYQQHFADRFYLELIRTGRSDEETYLHFA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            ++LA  ++LP+VATN  +F+ +E ++AH++ +A+     +    RP+  +P  YL+   E
Sbjct: 170  IELAEQYDLPVVATNEVVFIGQELFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEALEN+VEIA+RC+  +++    LP F  +        E   L  K+  GL
Sbjct: 230  MCELFADIPEALENSVEIAKRCNVTVRLWEYFLPAFPTEGM-----AETEFLVMKSKEGL 284

Query: 320  EVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL          AQ   +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGP
Sbjct: 285  EERLEFLFPDPEIRAQRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLE-KAFKAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
               E   AD  V  L+++ + LEG  R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  ALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGNFPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V +  IP DD  ++ +
Sbjct: 524  QFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKAPVRIESIPLDDPASFRI 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
             I          S+  ++DP    T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK
Sbjct: 644  AISYPDEKWQHESLKEILDP----TYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 699

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K
Sbjct: 700  KPEEMAKQRATFEEGAVKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 759

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSL 839
            THYP EF+AA MT +MDN EK+     +  +  + ++PP +N+    F V +N  I Y +
Sbjct: 760  THYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVDENGAIVYGI 819

Query: 840  AAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKGVG      I+EA +    F  L DFC+R+D KK+N+RV+E L++AGALD  G  R
Sbjct: 820  GAIKGVGEGPIDAILEARTKGGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHR 879

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFSVE--NSSVRFE 953
              L+ SLD+  K A    +       ++F    G  +D   ++  +   VE     V  E
Sbjct: 880  AALMASLDDAVKAASQHHQAEAFGQADMF----GVLTDAPEEVEHKYIQVEPWPEKVWLE 935

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  LG Y +GHP++ Y   L K      +++  T R  ++ LA +V++ +   T++G+
Sbjct: 936  GERETLGLYLTGHPVNAYLTELNKYTSCRLKDATPTRRDQSLTLAGLVIAARVMTTKRGT 995

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            RIG +T  + +   E   F
Sbjct: 996  RIGIMTLDDRSGRMEVMLF 1014


>gi|88798272|ref|ZP_01113858.1| DNA polymerase III subunit alpha [Reinekea sp. MED297]
 gi|88779048|gb|EAR10237.1| DNA polymerase III subunit alpha [Reinekea sp. MED297]
          Length = 1167

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1052 (39%), Positives = 623/1052 (59%), Gaps = 45/1052 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL +G + + +++++ +  + PA+A+TD +N F  ++F      AGI+P
Sbjct: 3    SFVHLRLHTEYSLTDGIVRIKDLINRASELEFPAVAVTDISNFFGLVKFYNGCLGAGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G  L I+  D+         PF     + +L     GY+ L EL+S  +  +Q     
Sbjct: 63   ILGADLYIENPDD------DNAPF----LMTVLAMNETGYRNLTELISDGFQKNQKHDRA 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
               + WL E   EGLI+L+G   G +  A    ++  AE  +  +K +FGDR Y+ LQR 
Sbjct: 113  ITRVEWLAE-KNEGLIVLSGARLGDVGYALLRGNNDRAESLVQHWKSVFGDRYYLELQRT 171

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  D       V L   + +P+VATN+ +FL+ ED+EAH+  + +     +    RPR 
Sbjct: 172  GRDQDESLVQGAVALGRKYGVPVVATNDVMFLTREDFEAHETRVCINDGVTIDDPKRPRR 231

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YLK+  EM  +F D+P+ALEN+V IA+RCS  +Q+    LP +   E   +    
Sbjct: 232  YAEEQYLKSSDEMTELFRDIPQALENSVLIAQRCSATVQLGKYFLPDYPVPEGLTM---- 287

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADF 363
            ++  R  +  GLE RLA     K    ++ RQ    RL FEL++I +M F GYFLIV DF
Sbjct: 288  DDYFRQLSAEGLERRLAVALDPKQPDFEERRQQYFDRLKFELDIIIQMGFPGYFLIVMDF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+W K N +PVGPGRGSGAGS+ A+ L ITD+DP+ + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IRWGKNNGVPVGPGRGSGAGSLVAWVLDITDLDPIEYDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + R+ VI YV   YG + V+QI+TFG++ AKA +RDV R    P+   D+L KLIP DP
Sbjct: 408  MEGRERVINYVAETYGRQAVSQIVTFGTMAAKAVVRDVARVQGKPFGLADKLSKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A+ + +  +E    D     + E++ KLEG+ R    HA G+VI    L+   
Sbjct: 468  GMKLT-KALDEVAELKEFLEEDEEAAEIWEMALKLEGITRQTGKHAGGVVIAPTKLTDFS 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598
            P+  +      VTQ++   +E AGL+KFDFLGL+TLT++  +L  +     AQ    +D+
Sbjct: 527  PLLCEEDGTGLVTQYDKNDVEAAGLVKFDFLGLRTLTIIDWALKIINPRLEAQGKEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD  ++ LL    T  +FQLES GM+  +  +QPDC+ED+IALV+L+RPGP+ + 
Sbjct: 587  AHIPLDDAASFELLQQAKTTAVFQLESRGMKDLVMRLQPDCLEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  NRK+G+E++        H  ++P+L  T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFINRKHGREELSYPDSQYQHEWLEPILAPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRAIFEEGAIGKGVDGNLAMRIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTHYP  F+AA+M+ E+ N EK+  F ++ RQ NI ++PP VN     F V 
Sbjct: 767  VSYQTLWLKTHYPAAFMAATMSSELQNTEKVVIFVEECRQINIDVLPPDVNAGDYYFTVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            + ++I Y L AIKGVG      I+ A  +  PF  L DFC R+D KK+N+R +E+L+ AG
Sbjct: 827  EQDQIIYGLGAIKGVGEGPVEAIVNARRSGGPFKDLFDFCERIDPKKVNKRSIEALIKAG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            ALD  G +R  +L++  +  K A+    N      ++F   +   +  +      V  S+
Sbjct: 887  ALDSIGPNRQLMLEATPDAVKTAEQSAANAAAGMMDMFGAIEAEETGDVYEPYAHVREST 946

Query: 950  --VRFENEQRVLGFYFSGHPLDVYKPILRKMG------IKGYEESVATIRGNNIR-LAAM 1000
              +R   E+  LG Y +GHP+D ++  +R++       + G  E +   R  NI+ LA +
Sbjct: 947  LKIRLAGEKDTLGLYLTGHPIDEFENEVRQVATLRLGELDGSAEELKRARRGNIKTLAGL 1006

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V+  + ++T++G  +  VT  +     E   F
Sbjct: 1007 VMGVRTRQTQRGDTMAIVTLDDRTGRIEMTLF 1038


>gi|212704482|ref|ZP_03312610.1| hypothetical protein DESPIG_02538 [Desulfovibrio piger ATCC 29098]
 gi|212672049|gb|EEB32532.1| hypothetical protein DESPIG_02538 [Desulfovibrio piger ATCC 29098]
          Length = 1157

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1036 (40%), Positives = 625/1036 (60%), Gaps = 25/1036 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YSLL+GA+ + ++  +      PA AITD  NLF A +F       GI+PI
Sbjct: 4    FVHLHCHTEYSLLDGAIRVKDLCSRAKDFGMPACAITDHGNLFGAAKFFLTCKDFGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +   D+L  T++          ++LL    EGY  L++LVSR YL +      R
Sbjct: 64   IGCEVYV-CHDHLDKTSELAR---KRNHLILLSENIEGYHNLVKLVSRSYL-EGFHYKPR 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +  + L++  +EGLI L+   +G I RA        A      +  ++ DR Y+ LQ + 
Sbjct: 119  VDKAMLRQY-SEGLICLSACIAGEIPRALNAGDMDGAIALAREYADIYPDRFYLELQSNS 177

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
              ++   ++ ++++A   +LP+VATN+  +L+ +D +AH+VL+ +   T +    R R  
Sbjct: 178  LPEQEIANKGLLEIADHLKLPIVATNDCHYLNADDADAHEVLLCIQTQTTMDDPKRMRFG 237

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T D Y K+  EM ++F  LP++L NT EIA RC+  L +     P +   E   +    +
Sbjct: 238  THDLYYKSGEEMEAVFGHLPQSLSNTAEIAERCNVELDMGHHYFPVYKLPEGASL----D 293

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            +E R  A  GLE RL +       + Q YR RL +EL VI  M F GYFLIV +FI WAK
Sbjct: 294  SEFRRLAEEGLERRLEKHPNRANINPQAYRDRLQYELKVILEMGFPGYFLIVQEFINWAK 353

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             + IPVGPGRGS AGS+ A++L IT++DPL ++LLFERFLN +R+S+PD D+DFC+ RR 
Sbjct: 354  DHGIPVGPGRGSAAGSLVAWSLRITNLDPLPYNLLFERFLNAERVSLPDIDVDFCERRRT 413

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+++ + YG + VAQI TFG+++AK  +RDVGRAL M +++ DR+ KL+P+D    ++
Sbjct: 414  EVIQHMVDTYGKDSVAQITTFGTMKAKGVVRDVGRALGMSFAETDRIAKLVPDDLKMTIN 473

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+  +   +     DP V +LL+ +++LEGL RHASTHAAG+V+  RP+ + +P+Y  
Sbjct: 474  -KALEAEPDLQNLYDTDPQVKKLLDTARRLEGLSRHASTHAAGLVVSPRPMDEFLPLYTG 532

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
             R +L VTQF+    EK+GL+KFDFLGLKT+TL+Q +LD +  +G    DL  +P  D  
Sbjct: 533  KRGEL-VTQFDGPMTEKSGLVKFDFLGLKTMTLIQDTLDNITLQGKTPPDLDNLPLTDAA 591

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRK 665
            TY L     T GIFQ+ESSGMRQ L  ++P C ED+IA+++LYRPGP+ + +V  +  RK
Sbjct: 592  TYDLYARGDTDGIFQVESSGMRQYLRMLKPSCFEDVIAMLALYRPGPLGSGMVDEFIKRK 651

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+  +V  H  +   L++T GVI+YQEQVMQIAQ+++ Y+L  AD+LRRAMGKK  E M
Sbjct: 652  HGQVPVVYPHESLSDCLRDTYGVIVYQEQVMQIAQIIASYTLGGADLLRRAMGKKKPEAM 711

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             K++ +F+ GA KNG+ K  A  IF+L+ KFA+YGFNKSH+AAYA ISY TA++K H+ V
Sbjct: 712  AKERVKFVEGAQKNGVDKAKADEIFDLMEKFAEYGFNKSHSAAYAQISYFTAYLKVHHTV 771

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+AA +T EM N EK+ K+    +   I ++ PSVN     F   + ++ + L  IK V
Sbjct: 772  EFMAALLTSEMSNQEKLLKYISCCKDMGIDVVQPSVNASQRSFSAREGKVVFGLGGIKNV 831

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G +    IM+A  D  + SL D C RVD +K+ +RVLE+L+  GA DCFG SR  LL +L
Sbjct: 832  GDSAITEIMDARKDGEYVSLFDMCCRVDLRKVTKRVLEALIKGGACDCFGVSRAALLAAL 891

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-------RFENEQRV 958
            D +   AQ   K + +   ++ A      +       F    S +       R +NE+  
Sbjct: 892  DTVVTRAQKKAKEKNSNQISLLAMAPQVEAKPQPGIGFDCPESGIPEMDEDQRLKNEKEA 951

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGW 1017
            LGF+ + HPL  +   +R++ +   E++        +  A +VVS ++  T+ KG R+ +
Sbjct: 952  LGFFLTSHPLQPFSREMRRLRLTTLEDARDLYPKAELSTAVLVVSLKEVITKSKGERMAF 1011

Query: 1018 VTFSEPAKEYEANFFP 1033
            V   +     E  FFP
Sbjct: 1012 VGVEDLTGHAEVTFFP 1027


>gi|269101954|ref|ZP_06154651.1| DNA polymerase III alpha subunit [Photobacterium damselae subsp.
            damselae CIP 102761]
 gi|268161852|gb|EEZ40348.1| DNA polymerase III alpha subunit [Photobacterium damselae subsp.
            damselae CIP 102761]
          Length = 1159

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1048 (39%), Positives = 627/1048 (59%), Gaps = 45/1048 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +  I+ K +  Q PA+AITD  NL   ++F   A  AGI+
Sbjct: 4    PRFIHLRVHSDFSMIDGLAKVKPIIKKASELQMPALAITDFTNLCGLVKFYYAAHDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +  ++       G   F     + +L +  EGY+ L  L+S  Y     +  
Sbjct: 64   PIIGADFKVQSEE------LGDELF----DLTILAANNEGYKNLTLLISEAYQRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   +GLI+L+GG +G + +A    +  + E+ +  ++  F D  Y+ L R
Sbjct: 114  PVIDKEWLIK-HKDGLILLSGGKTGDVGKALLKGNQNMVEQCVAFYQTYFSDSYYLELVR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       ++LA   +LP+VATN+   LS + +EAH++ +A+     ++  +RP+
Sbjct: 173  TGRPDEEAYLHFAIELAEKAQLPVVATNDVRLLSADQFEAHEIRVAIHDGYTLADPNRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   YL++  EM  +F+D+PEALEN+VEIA+RC+  +++    LP F   E       
Sbjct: 233  NYSAQQYLRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPTGEL-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVVKSKEGLEERLEFLFPDPDIRAERRPEYDERLEVELEVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P +P
Sbjct: 408  MDKRDQVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPAEP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + + +++  +D  V  L+++ + LEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFDAEPQLQQSYDSDEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +     AQ    V++
Sbjct: 527  PLYCDAEGHHPVTQFDKNDVESAGLVKFDFLGLRTLTIIDWALGMINPRLEAQGEDPVNI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP  D +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPMADQKSFTMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E +        H  +  +L  T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAVSYPDEKWQHESLKDILDPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F +GA KNG+   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRAVFEAGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +KI     +  +  ++++PP VN     F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKIIGLVDECHRMKLKLLPPDVNKGLYRFNVD 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + A+KGVG     +I+ A  A   F  L DFC+R+D+KK+N+RVLE L+ +G
Sbjct: 827  DQGAIVYGIGAVKGVGEGPIENIIAAREAGGHFKDLFDFCARIDTKKVNKRVLERLIKSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947
            A+D  G +R  ++ SLD+  + A    +       ++F    G  ++     +    N  
Sbjct: 887  AMDRLGPNRASMMASLDDAIRAASQHHQAEAFGQTDMF----GVLTEAPEEVEHKYANIP 942

Query: 948  ---SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L+       +++  T R     +A +V++ 
Sbjct: 943  EWPDKVWLEGERETLGLYLTGHPINSYLSELKHYTTWRLKDAQPTRRDGAATVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGLLTLDDRSGRMEVMLF 1030


>gi|59712554|ref|YP_205330.1| DNA polymerase III subunit alpha [Vibrio fischeri ES114]
 gi|59480655|gb|AAW86442.1| DNA polymerase III alpha subunit [Vibrio fischeri ES114]
          Length = 1159

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1054 (40%), Positives = 624/1054 (59%), Gaps = 57/1054 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+++G   +  ++ K+     PA+A+TD  NL   +++   A  AG++
Sbjct: 4    PKFVHLRVHSDFSMVDGLSKVPPLVKKVGELGMPAMALTDFTNLCGLVKYYFAAHGAGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +  Q+       G   F    ++ +L    EGY+ L  L+S  Y     + +
Sbjct: 64   PIIGADFKVQSQEF------GNELF----NLTVLAKNNEGYKNLTLLISEAYQRGHVQHT 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   WL     EGLI+L+GG SG + +A    + ++  + +  ++  F +  Y+ L R
Sbjct: 114  PVMDKEWLVN-HKEGLILLSGGKSGDVGKALLKGNKELVNECVEFYQMHFPEHYYLELTR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   V+LA    LP+VATN+  F+  +D++AH++ +A+     +    R
Sbjct: 173  TGRADE--ESYLHFAVELAEKENLPVVATNDVRFIKADDFDAHEIRVAIHDGFTLEDPRR 230

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P++  D  YL++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKLYSDQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTEGM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + E+ L  K+  GLE RLA        +     +Y  RL  EL+VI +M F GYFLIV 
Sbjct: 287  -KIEDFLVKKSQEGLERRLAFLFPDEKVRLERRPEYDDRLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID
Sbjct: 346  EFIQWSKDNAIPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDID 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P+
Sbjct: 406  FCMDKRDQVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPS 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   ++ +A   + +  E   AD  V  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLA-KAFEAEPQLPELYNADEEVKALIDMCRILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  +     V
Sbjct: 525  FAPLYCDADGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  I  +D  +++LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIESISLEDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E++        H  +   L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 645  SGMVDNFIDRKHGREEVSYPDATWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRGTFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN +KI     +  +  + ++PP VN+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTDKIIGLVDECFRMKLTVLPPDVNSGLYRFN 824

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V +   I Y + AIKGVG     +I+EA +    F  L DFC+R+D+KK N+RV+E L+ 
Sbjct: 825  VDEKGAIVYGIGAIKGVGEGPIENIIEARNKGGHFRDLFDFCARIDTKKTNKRVVEKLIR 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGALD  G  R  L+ SLD+  K A    +  +    ++F          +T     VE 
Sbjct: 885  AGALDRLGPHRAALMASLDDAMKAAGQHHQAESFGQSDMFG--------VLTQAPEEVEQ 936

Query: 948  S---------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
            +          V  E E+  LG Y +GHP++ Y   L +       ++  T R   + +A
Sbjct: 937  AYIHVPKWPEKVWLEGERETLGLYLTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVA 996

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +V++ +   T++G+RIG +T  + +   E   F
Sbjct: 997  GLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|14194702|sp|Q9XDH6|DPO3A_PSEFL RecName: Full=DNA polymerase III subunit alpha
 gi|5531684|gb|AAD44402.1|AF062919_1 DNA polymerase III [Pseudomonas fluorescens]
          Length = 1173

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1065 (40%), Positives = 624/1065 (58%), Gaps = 65/1065 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  AGI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRIKPLVKALTGMGMPAVAVTDQNNMCSLVKFYKNAMGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G         +L ++N  K P   +  I LLV  A+GY+ L EL+SR ++  Q    V
Sbjct: 64   ICGA--------DLWLSN--KDPDGPLSRISLLVMNAQGYRNLTELISRGFIDGQRNGMV 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ E   EGLIML+    G I  A    +   AE     +  +F DR Y+ +QR 
Sbjct: 114  IIEREWVAE-ANEGLIMLSAAKEGEIGMAMIGGNPAEAEALAREWMAVFPDRFYLEIQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +R  D  +    V LA     PLVATN+  F+ +ED+ AH+  + +     +    R + 
Sbjct: 173  NRPNDEEQLHGAVALADKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKN 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FSDLP+A+ENTVEIA+RC+  +++    LP +   +   I    
Sbjct: 233  YSDQQYLKSAEEMAELFSDLPDAIENTVEIAKRCNIDVKLGKHFLPDYPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RL+        + Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV RA    +   DRL K++P +
Sbjct: 409  CMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSFGLADRLSKMVPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++ DC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKLDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   HP      + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELAYPHPDYQYEGLQPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G + N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F V
Sbjct: 768  LVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  RI Y L AIKGVG      I EA    PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  NDEGRIVYGLGAIKGVGEGPVEAITEARQAGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887

Query: 890  ALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            ALD  G                +R  LL +++   K A+   + R + H ++F    G F
Sbjct: 888  ALDRLGPYFHDEQKAYQANIDRNRAVLLAAMEEAIKSAEQTARTRDSGHADLFG---GLF 944

Query: 935  ----SDKITLEKFSVENS-SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
                +D   + + + E +   R + E+  LG Y +GHP+D Y+  +R+       + +  
Sbjct: 945  VEEDADVYAIHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFA----RQRIID 1000

Query: 990  IRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++   +   +A M+++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1001 LKPARDTQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045


>gi|302187913|ref|ZP_07264586.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. syringae
            642]
          Length = 1173

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1067 (39%), Positives = 622/1067 (58%), Gaps = 69/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173  NRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHN 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA        + Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             +V  + NRK+G+ ++   +P +D       P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 648  GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V D+ RI Y L AIKGVG      I +A    PF  L DFC+RVD K++N+R L+ L+ 
Sbjct: 826  TVSDDGRILYGLGAIKGVGEGPVEAITDARQSGPFKDLFDFCARVDLKRVNKRTLDGLIR 885

Query: 888  AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929
            +GALD  G                +R  LL +L+   + A+   ++  + H ++F     
Sbjct: 886  SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFV 945

Query: 930  --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              +   +++     + S+++   R   E+  LG Y +GHP+D Y+  +R+       + +
Sbjct: 946  EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998

Query: 988  ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++   +   +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 999  IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|71279814|ref|YP_268312.1| DNA polymerase III subunit alpha [Colwellia psychrerythraea 34H]
 gi|71145554|gb|AAZ26027.1| DNA polymerase III, alpha subunit [Colwellia psychrerythraea 34H]
          Length = 1186

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1062 (40%), Positives = 617/1062 (58%), Gaps = 58/1062 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+ +G   +  I+ K      PA+A+TD  NL   +++   A  AGI+
Sbjct: 18   PKFIHLRVHSDYSMCDGLKKVKPIVAKAVELNMPALALTDQTNLCGLVKYYHAAHGAGIK 77

Query: 69   PIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PIIGC   +   +++D L               IV+L +   GY+ + EL+S+ Y+    
Sbjct: 78   PIIGCDFWVKSDELEDELS-------------RIVVLTTNNVGYKNITELISKAYMRGHI 124

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            +    I  SWL E   EGLI+L+GG  G I +A    ++++ ++ +  +++ F    ++ 
Sbjct: 125  QNKAVIDKSWLVEY-KEGLILLSGGREGDIGKALLKGNTELVDEMVSFYQQHFDRCYFLE 183

Query: 186  LQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R    D      + V+LA    LP+VATN  +FLS  D++AH++ +A+     +  K 
Sbjct: 184  LVRTGRNDEENYIHLAVELAEKENLPVVATNEVMFLSPNDFDAHEIRVAIHDGFTLDDKR 243

Query: 245  RP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP R + + YL++  EM  +FSD+PEAL N+VEIA+RC+  + +   +LP F        
Sbjct: 244  RPKRYSSEQYLRSEEEMCELFSDIPEALANSVEIAKRCNVTVTLGEYVLPDF------PT 297

Query: 304  QKEEENELRNK-AVAGLEVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +  E N+   K +  GLE RL Q     A       + Y +RL  EL V+  M F GYFL
Sbjct: 298  EGLEINDFFIKVSEKGLEKRLDQLFDRQADDFAEIRKPYDERLAIELEVVNNMGFPGYFL 357

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDF
Sbjct: 358  IVMEFIQWSKDNNIPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDF 417

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 418  DIDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 477

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP  P   ++ +A  ++ +  E    D  V  L+++ + LEG  R+A  HA G+VI    
Sbjct: 478  IPPTPGMTLA-KAFEEEPKLPEVYAQDSDVKDLIDMCRILEGTTRNAGKHAGGVVISPTT 536

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595
            ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT+LQ +++    + +K   
Sbjct: 537  ITDFAPLYCDDEGKNPVTQFDKNDVEDAGLVKFDFLGLRTLTILQWAIEMADAKLIKAGK 596

Query: 596  --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              +D++ I  +D  ++ LL    T  +FQLESSGM+  ++ ++PDC EDIIALV+L+RPG
Sbjct: 597  EPIDITKIDLEDKASFKLLLASKTTAVFQLESSGMKSLIDKLKPDCFEDIIALVALFRPG 656

Query: 654  PIDNIVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V N   RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GYS
Sbjct: 657  PLQSGMVDNFIERKHGREEVSYPDATWQHEDLQPVLEPTYGIILYQEQVMQIAQVLAGYS 716

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+
Sbjct: 717  LGGADMLRRAMGKKKPEEMAKQRAGFEQGAKDRGVDGELAMKIFDLVEKFAGYGFNKSHS 776

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT WMKTH+P  F+AA M+ +MDN EKI     +     I ++PP VN    
Sbjct: 777  AAYALVSYQTLWMKTHFPAPFMAAVMSADMDNTEKIVTLVDECGNMEIDLLPPDVNAGQY 836

Query: 827  DFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884
             F V  DN+I Y + A+KGVG      I+ A  +D PF  L DFC+R+D KK N+RVLE 
Sbjct: 837  KFTVNSDNQIVYGIGAVKGVGEGPIEAIISARQSDGPFTDLFDFCARLDLKKTNKRVLEK 896

Query: 885  LVFAGALDCF------------GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            L+ +GA+D              G +R  L ++L    K A+   K  +    ++F     
Sbjct: 897  LIKSGAMDSLGPKYVQGKAKEQGANRAALFETLPEAIKAAEQHAKAESLGQNDLFGLIND 956

Query: 933  TFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
              +D + T ++          + E+  LG Y +GHP++ Y   ++K           T R
Sbjct: 957  EQTDSRQTFKEVRAWPEEKWLDGEKETLGLYLTGHPINRYLSEIKKYSSSRLVVMQPTGR 1016

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    +V+  +    ++G R   VT  + +   +   FP
Sbjct: 1017 DRQAVAVGLVIGVRVLVNKRGRRWALVTLDDKSARMDIRLFP 1058


>gi|330959213|gb|EGH59473.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. maculicola
            str. ES4326]
          Length = 1173

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1067 (39%), Positives = 622/1067 (58%), Gaps = 69/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A+  L  + ++F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADDLLREWLQVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173  NRTNDEEHLHAAVALAQRHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHN 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RL+        + Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLSVLLPKETTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEAPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             +V  + NRK+G+ ++   +P +D       P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 648  GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V D+ RI Y L AIKGVG      I +A    PF  L DFC+RVD K++N+R L+ L+ 
Sbjct: 826  TVSDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRVNKRTLDGLIR 885

Query: 888  AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929
            +GALD  G                +R  LL +L+   + A+   ++R + H ++F     
Sbjct: 886  SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFV 945

Query: 930  --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              +   +++     + S+++   R   E+  LG Y +GHP+D Y+  +R+       + +
Sbjct: 946  EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998

Query: 988  ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++   +   +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 999  IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|330872712|gb|EGH06861.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv.
            morsprunorum str. M302280PT]
          Length = 1173

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1067 (39%), Positives = 623/1067 (58%), Gaps = 69/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  + +   PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPAEADELLREWLAVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +R  D       V LA  H  PLVATN+  F+++ D+EAH+  + +     +    R   
Sbjct: 173  NRANDEEHLHAAVALAERHGAPLVATNDVRFINQTDFEAHETRVCIGEGRALDDPRRSHN 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA        + Y    Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRERAKVDEAPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             +V  + NRK+G+ ++   +P +D       P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 648  GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V D+ RI Y L AIKGVG      I +A    PF  L DFC+RVD K++N+R L+ L+ 
Sbjct: 826  TVSDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDGLIR 885

Query: 888  AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929
            +GALD  G                +R  LL +L+   + A+   ++  + H ++F     
Sbjct: 886  SGALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGGLFV 945

Query: 930  --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              +   +++     + S+++   R   E+  LG Y +GHP+D Y+  +R+       + +
Sbjct: 946  EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998

Query: 988  ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++   +   +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 999  IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|298488347|ref|ZP_07006379.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
 gi|298157169|gb|EFH98257.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
          Length = 1173

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1067 (39%), Positives = 622/1067 (58%), Gaps = 69/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173  NRNNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHN 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA        + Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             +V  + NRK+G+ ++   +P +D       P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 648  GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V D+ RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ L+ 
Sbjct: 826  TVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIR 885

Query: 888  AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929
            +GALD  G                +R  LL +L+   + A+   ++  + H ++F     
Sbjct: 886  SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFV 945

Query: 930  --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              +   +++     + S+++   R   E+  LG Y +GHP+D Y+  +R+       + +
Sbjct: 946  EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998

Query: 988  ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++   +   +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 999  IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|260767810|ref|ZP_05876745.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
 gi|260617319|gb|EEX42503.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
          Length = 1159

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1051 (40%), Positives = 617/1051 (58%), Gaps = 51/1051 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G++
Sbjct: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYGTAHGCGVK 63

Query: 69   PIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PI+G    +   +  D L               + +L     GY+ L  L+S  YL    
Sbjct: 64   PIVGADFLVRSEEFGDELT-------------RLTVLAKDNVGYKNLTLLISDAYLRGHV 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            +    I   WL +   EGLI+L+G   G I RA    +  + EK +  ++  F D  Y+ 
Sbjct: 111  QNQPVIDKEWLIKY-AEGLILLSGAKGGDIGRALLKGNQALVEKCVAFYQTHFTDNFYLE 169

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R  R  +       ++LA   ELP+VATN+ +F+  + ++AH++ +A+     +    
Sbjct: 170  LVRTGRADEENYLHFALELAEQAELPVVATNDVVFIDPDQFDAHEIRVAIHDGYTLEDPR 229

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP+  +   YL++  EM  +F D+PEALEN+VEIA+RC+  +++    LP F  +     
Sbjct: 230  RPKNYSAQQYLRSEEEMCELFDDIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE----- 284

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              EE   L  K+  GLE RL         +      Y +RL+ EL VI +M F GYFLIV
Sbjct: 285  GMEETEFLVKKSHEGLEERLEFLFPDPAVRAERRPAYDERLEIELKVINQMGFPGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+
Sbjct: 345  MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ K+IP
Sbjct: 405  DFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKMIP 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   +  +A   +   +E   AD  V  L+++ + LEG  R+A  HA G+VI    ++
Sbjct: 465  PDPGMTLE-KAFKAEPALQELYDADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTAIT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     
Sbjct: 524  DFAPIYCDSEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGLINPRREKAGEPP 583

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            V +  IP  D  ++ +L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+
Sbjct: 584  VRIESIPLVDPASFRMLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPL 643

Query: 656  DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V N  +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+L+GY+L 
Sbjct: 644  QSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLAGYTLG 703

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  F SGA  NG+   +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 704  GADMLRRAMGKKKPEEMAKQRAVFQSGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSAA 763

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+KTH+P EF+AA MT +MDN EK+     +  +  + ++PP +N+    F
Sbjct: 764  YALVSYQTLWLKTHFPAEFMAAVMTADMDNTEKVVGLVDECMRMGLTVLPPDINSGLYRF 823

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V D   I Y + AIKGVG      I+EA +    F  L DFC+R+D KK+N+RV+E L+
Sbjct: 824  NVDDTGAIVYGIGAIKGVGEGPIEVILEARNKGGYFKDLFDFCARIDIKKVNKRVIEKLI 883

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKF 943
             AGALD  G  R  ++ SLD+  K A    +       ++F    G  +D   ++  +  
Sbjct: 884  LAGALDRLGPHRAAMMASLDDAVKAASQHHQAEAFGQADMF----GVLTDAPEEVERKYI 939

Query: 944  SVEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
             V      V  E E+  LG Y +GHP++ Y   L K       E++ T R  ++ +A +V
Sbjct: 940  QVPEWPEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLNEAMPTRRDQSLTVAGLV 999

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++ +   T++G+RIG +T  + +   E   F
Sbjct: 1000 IAARVMTTKRGNRIGLMTLDDRSGRMEVMLF 1030


>gi|92112711|ref|YP_572639.1| DNA polymerase III subunit alpha [Chromohalobacter salexigens DSM
            3043]
 gi|91795801|gb|ABE57940.1| DNA polymerase III, alpha subunit [Chromohalobacter salexigens DSM
            3043]
          Length = 1168

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1053 (40%), Positives = 626/1053 (59%), Gaps = 51/1053 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VH+ YSL++G + L  +++       PA+A+TD +NLF  ++  + A  AG++P+
Sbjct: 5    FVHLRVHTEYSLVDGLVRLKPLIEATVEGGMPAVAVTDDSNLFGLVKTYKAAQGAGLKPV 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG         +L M N      P    + LL    +GY+ L EL+S+ +   Q +    
Sbjct: 65   IGA--------DLWMENPHDEEHPY--RVTLLAMDNDGYRHLTELISQGWSEGQQRGQGI 114

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            +   W+    + GLI L+G   G I R       Q A +    +K  F  R Y+ +QR  
Sbjct: 115  LKKEWIF-ARSAGLIALSGARDGEIGRYLLSEHGQAARELCEGWKAAFPGRFYLEVQRTG 173

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R +D       V LA   E P+VATN+  FL+ EDY AH+  +A+     +    R R  
Sbjct: 174  REHDEECLHLSVALAAETETPVVATNDVRFLTREDYWAHETRVAIGEGKALDDPRRERRY 233

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            + + YLK+  EM  +FSDLPEALEN+V IA RC+  + +    LP +   +   +    +
Sbjct: 234  SEEQYLKSPQEMAELFSDLPEALENSVMIAARCNVDVPLGEIFLPEYPVPDGMSM----D 289

Query: 309  NELRNKAVAGLEVRL-----AQGAIAKGYHAQDY----RQRLDFELNVIARMKFSGYFLI 359
               R  +  GL  RL      +  I  G    +Y    R+RLDFELN+I  M F GYFLI
Sbjct: 290  GFFRKISHDGLTERLDKLFSGENPIYPGRDLAEYEPAYRERLDFELNIILEMGFPGYFLI 349

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFIQWAK N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 350  VMDFIQWAKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 409

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI YV ++YG + V+QI+TFG++ AKA +RDV RA   PYS  D+L KLI
Sbjct: 410  VDFCMEKRDRVIEYVASRYGRDAVSQIVTFGTMAAKAVVRDVARAQGKPYSMGDKLSKLI 469

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +    ++ +AI  +   +E   +D     + +++ KLEG+ R    HA G+VI    L
Sbjct: 470  PFEVGMTLA-KAIEQEPALKEYLDSDEESQEIWDMALKLEGITRGTGKHAGGVVIAPTKL 528

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRG-V 594
            +   P+  D      V Q++   IE+AGL+KFDFLGL+TLT++  +L+ +    A+ G  
Sbjct: 529  TDFSPLLCDEDGSGLVVQYDKNDIEEAGLVKFDFLGLRTLTIIDWALEMVDTVRAREGQG 588

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP DD  T+ +L    T  +FQLES GM++ ++ +QPD +ED+IALV+L+RPGP
Sbjct: 589  PLDIASIPLDDVPTFDMLKKAETTAVFQLESRGMKELIKRLQPDSLEDMIALVALFRPGP 648

Query: 655  IDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + NRK+G+ ++   HP     L+ P+L+ T G+I+YQEQVMQIAQ+L+GYSL
Sbjct: 649  LQSGMVDDFINRKHGRAEVAYPHPDYQHELLKPVLEPTYGIILYQEQVMQIAQVLAGYSL 708

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             +AD+LRRAMGKK  EEM KQ+  F+ G + NGI K +A N+F+L+ KFA YGFNKSH+A
Sbjct: 709  GQADMLRRAMGKKKPEEMAKQRAGFMEGCAANGIDKDLAGNLFDLVEKFAGYGFNKSHSA 768

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AY ++SYQTAW+K HYP  F+AA ++ EMDN++K+    ++ R   + + PP VN     
Sbjct: 769  AYGLVSYQTAWLKAHYPAPFMAAVLSTEMDNLDKVVPLIEECRNQGLTVTPPDVNMGSYK 828

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +  R+ Y L AI+GVG      I+EA  AD  F  L DFC RVD+K+LN+R LE+L
Sbjct: 829  FTVDEQGRVVYGLGAIRGVGEGPIGAIVEAREADGAFSDLFDFCRRVDAKRLNKRTLEAL 888

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-----EKG-TFSDKIT 939
            + +GALD  G +R  L+ SL+   K A     N      ++F       E G  ++D   
Sbjct: 889  IRSGALDNLGPTRAVLMASLEAALKAAAQSTTNANLGMMDMFGEAFSEPEAGDAYADYRG 948

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
            + +++ +    R   E+  LG Y +GHP+D Y+  L++  +      +   RG + R+A 
Sbjct: 949  VREWTDKE---RLAGEKDTLGLYLTGHPIDEYESELKRF-VSTRIVDLKPQRGESQRVAG 1004

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +  K+++G  + ++T  +     EA+ F
Sbjct: 1005 LVVAMRTMKSKRGDTMAFITLDDRTGRIEASLF 1037


>gi|315179360|gb|ADT86274.1| DNA polymerase III subunit alpha [Vibrio furnissii NCTC 11218]
          Length = 1159

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1051 (40%), Positives = 617/1051 (58%), Gaps = 51/1051 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G++
Sbjct: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYGTAHGCGVK 63

Query: 69   PIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PI+G    +   +  D L               + +L     GY+ L  L+S  YL    
Sbjct: 64   PIVGADFLVRSEEFGDELT-------------RLTVLAKDNVGYKNLTLLISDAYLRGHV 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            +    I   WL +   EGLI+L+G   G I RA    +  + EK +  ++  F D  Y+ 
Sbjct: 111  QNQPVIDKEWLIKY-AEGLILLSGAKGGDIGRALLKGNQALVEKCVAFYQTHFTDNFYLE 169

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R  R  +       + LA   ELP+VATN+ +F+  + ++AH++ +A+     +    
Sbjct: 170  LVRTGRADEENYLHFALDLAEQAELPVVATNDVVFIDPDQFDAHEIRVAIHDGYTLEDPR 229

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP+  +   YL++  EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +     
Sbjct: 230  RPKNYSAQQYLRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE----- 284

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              EE   L  K+  GLE RL         +      Y +RL+ EL VI +M F GYFLIV
Sbjct: 285  GMEETEFLVKKSHEGLEERLEFLFPDPAVRAERRPAYDERLEIELKVINQMGFPGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+
Sbjct: 345  MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ K+IP
Sbjct: 405  DFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKMIP 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   +  +A   +   +E   AD  V  L+++ + LEG  R+A  HA G+VI    ++
Sbjct: 465  PDPGMTLE-KAFKAEPALQELYDADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTAIT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     
Sbjct: 524  DFAPIYCDSEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGLINPRREKAGEPP 583

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            V +  IP  D  ++ +L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+
Sbjct: 584  VRIESIPLVDPASFRMLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPL 643

Query: 656  DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V N  +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+L+GY+L 
Sbjct: 644  QSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLAGYTLG 703

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  F SGA  NG+   +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 704  GADMLRRAMGKKKPEEMAKQRAVFQSGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSAA 763

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+KTH+P EF+AA MT +MDN EK+     +  +  + ++PP +N+    F
Sbjct: 764  YALVSYQTLWLKTHFPAEFMAAVMTADMDNTEKVVGLVDECMRMGLTVLPPDINSGLYRF 823

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V D   I Y + AIKGVG      I+EA +    F  L DFC+R+D KK+N+RV+E L+
Sbjct: 824  NVDDTGAIVYGIGAIKGVGEGPIEVILEARNKGGYFKDLFDFCARIDIKKVNKRVIEKLI 883

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKF 943
             AGALD  G  R  ++ SLD+  K A    +       ++F    G  +D   ++  +  
Sbjct: 884  LAGALDRLGPHRAAMMASLDDAVKAASQHHQAEAFGQADMF----GVLTDAPEEVERKYI 939

Query: 944  SVEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
             V      V  E E+  LG Y +GHP++ Y   L K       E++ T R  ++ +A +V
Sbjct: 940  QVPEWPEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLNEAMPTRRDQSLTVAGLV 999

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++ +   T++G+RIG +T  + +   E   F
Sbjct: 1000 IAARVMTTKRGNRIGLMTLDDRSGRMEVMLF 1030


>gi|229588818|ref|YP_002870937.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens SBW25]
 gi|229360684|emb|CAY47542.1| DNA polymerase III alpha subunit [Pseudomonas fluorescens SBW25]
          Length = 1173

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1065 (39%), Positives = 620/1065 (58%), Gaps = 65/1065 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  AGI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G         +L ++N  K P   +  I LL     GY+ L EL+SR ++  Q   S+
Sbjct: 64   ICGA--------DLWLSN--KDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ E   EGLIML+    G I  A    + Q AE     + ++F DR Y+ +QR 
Sbjct: 114  IIEREWVAE-ANEGLIMLSAAKEGEIGIALLGGNPQEAEVLAREWMQVFPDRFYLEIQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
            +R  D       V LA     PLVATN+  F+ +ED+EAH+  + +     +    R + 
Sbjct: 173  NRPNDEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + + YLK+  EM  +FSDLPEALEN+VEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSEEQYLKSADEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RL+        + Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLSVLLPKDTTEDYDAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + ++++KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G + N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F V
Sbjct: 768  LVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTV 827

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  RI Y L AIKGVG      I EA  D PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  NDEGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887

Query: 890  ALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----H 929
            ALD  G                +R  LL +++   K A+   +   + H ++F       
Sbjct: 888  ALDRLGPYFHDEPKAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLFVEE 947

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
            +   + +    +  +++    R + E+  LG Y +GHP+D Y+  +R+       + +  
Sbjct: 948  DADVYGNHRKAKDLTLKE---RLKGEKDTLGLYLTGHPIDEYEGEIRRFA----RQRIID 1000

Query: 990  IRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++   +   +A M+++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1001 LKPARDTQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045


>gi|91204889|ref|YP_537244.1| DNA polymerase III subunit alpha [Rickettsia bellii RML369-C]
 gi|122426107|sp|Q1RKF9|DPO3A_RICBR RecName: Full=DNA polymerase III subunit alpha
 gi|91068433|gb|ABE04155.1| DNA polymerase III alpha chain [Rickettsia bellii RML369-C]
          Length = 1172

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1068 (39%), Positives = 628/1068 (58%), Gaps = 67/1068 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+  SSYS L  AL+   I++  ++ +  AI +TD  NLF +LEF+  A   G+QPI
Sbjct: 5    FIHLRTQSSYSFLASALTTEKIVELASSYKMAAICLTDKENLFGSLEFALYAIKKGLQPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L+I  +  +               I+L+     GY+ L++L S  +  +  K    
Sbjct: 65   HGVILNIQYETGV------------FAEILLIAKDETGYKNLLKLSSITFTTNDRKICNH 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L+E   EGLI L   + G I +    N  + AE      +++FGDR Y  + RH 
Sbjct: 113  ITFEDLKE-HQEGLITLCCYTEGVIGKCLLANKEEQAEMFARNLQEIFGDRFYFEIMRHD 171

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               ++  E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  V+
Sbjct: 172  LPEEQLIEDNYIKIASKLNIPLVATNKVLFSKKSMHDAHDVLLCISAGVTKEYPDRKTVS 231

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK---ECDDIQKE 306
             + Y K+  EM+ +F+DLP A+ENTV + +RC F    + P+LP F  K   E D I+KE
Sbjct: 232  ENCYFKSAKEMIELFADLPSAIENTVNLTQRCYFAAHTNPPMLPNFATKDISETDLIRKE 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363
             ++ L    +A L+ +     I+  +      +Y  RLD+ELN+I  M F+GYFLIV+DF
Sbjct: 292  AKDGL----LARLDTKFKSEHISIEHQESIKTEYFARLDYELNIICSMNFAGYFLIVSDF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNPDR+SMPDFDIDFC
Sbjct: 348  IKWSKKQGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPDRISMPDFDIDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P   
Sbjct: 408  QERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVPFSA 467

Query: 484  AHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAAGIV 533
             +PV+L QAI +      A   +           +  +L+ S  LEGL+RH+STHAAGIV
Sbjct: 468  INPVTLEQAIREVPELANAAKGNGLYNLEGELELIKLVLDTSLILEGLHRHSSTHAAGIV 527

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            I    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L ++ 
Sbjct: 528  IAGTDLVDIVPVYKDANSDMLVVGYSMKYCELAGLIKFDFLGLQTLTVITDCKKLLKEQN 587

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            +++D + + FDD +TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LYRPG
Sbjct: 588  IEIDFNDMTFDDEKTYQMLCKGKGVGVFQFESVGMKDALRRLKPDSIHDLIALGALYRPG 647

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  AD+L
Sbjct: 648  PMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADLL 707

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKKIK EM++Q+E F+ GA  N IS+  A +IF  +AKFA YGFNK+HAAAY VIS
Sbjct: 708  RRAMGKKIKAEMEQQEEIFVKGAIANNISEAQAKSIFATVAKFAGYGFNKAHAAAYGVIS 767

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831
            YQTA++K +YP EF+ A + LE++N +KI  F Q+A+  NI+I+ P++N     F V   
Sbjct: 768  YQTAYLKANYPAEFVVACLNLELNNHDKINLFLQEAKDNNIKIIAPNINISGGYFSVKSV 827

Query: 832  ------------------------DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLE 866
                                    D+ I ++L AIKGV     + +  E +A   F S+ 
Sbjct: 828  IPRLDCGIHGDQLKDTAVKPQYDIDSSIIFALGAIKGVTPNFGKLVTDERNARGAFKSIV 887

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA-QWVEKNRTNKHEN 925
            DF  R+  K +N ++LE+L+ AG  D    +R+QL  S+  +  Y+  + E+  +N+   
Sbjct: 888  DFIERLPPKAINSKLLENLIKAGCFDELHDNRLQLFLSISKLLAYSVSYHEEQASNQFSL 947

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            I   +  + S +I +     + +++ F  E   +G + S HPL  YK I  ++ I    +
Sbjct: 948  I---KVSSLSKEILVSSDYADKNTLAFY-EFEAMGLFISNHPLTEYKEIFNRLNILSSAD 1003

Query: 986  SVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +  G N  + A V+ K+  +     R   +  S+P   +E + F
Sbjct: 1004 LHNNLPDGTNRVMIAGVIQKKDSRMSARGRFVTLVLSDPENIFELSIF 1051


>gi|116667751|pdb|2HNH|A Chain A, Crystal Structure Of The Catalytic Alpha Subunit Of E.
           Coli Replicative Dna Polymerase Iii
          Length = 910

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/923 (44%), Positives = 581/923 (62%), Gaps = 36/923 (3%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4   PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64  PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
           P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
           + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           +LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
           +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890 ALDCFGYSRMQLLQSLDNIQKYA 912
           A D  G  R  L+ SL +  K A
Sbjct: 887 AFDRLGPHRAALMNSLGDALKAA 909


>gi|315187035|gb|EFU20792.1| DNA polymerase III, alpha subunit [Spirochaeta thermophila DSM 6578]
          Length = 1136

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1038 (41%), Positives = 616/1038 (59%), Gaps = 46/1038 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G++   +++ ++      A+A+TD  NLF  +EF +KA AAG+ PI
Sbjct: 6    FVHLHVHSDYSLLDGSIKTGDLVKRVKELGMDAVALTDHGNLFGMIEFYKKARAAGVTPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--------L 122
            +GC+  +  +            +     ++LL     GY  L++LV+  YL        +
Sbjct: 66   LGCECYVAPESRTLKDQDHAANY----HLILLAENYTGYLNLLKLVTESYLTGFYYKPRI 121

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181
            D G          L     EGLI L+    G I           A +R   ++ +FG DR
Sbjct: 122  DDG----------LLAAHHEGLIALSSCLGGEIPSLILGRRIDKARERARFYRDIFGPDR 171

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ LQ H   ++ R ++ +V+L+   ++PLVATN+  +L +E  EAH+VL+ +  +  +
Sbjct: 172  FYLELQDHGLSEQKRVNKALVELSKELDIPLVATNDVHYLLKEHAEAHEVLLCIGTNKKL 231

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            S +DR R  T + YLK+  EM  +F  +PEALENTV IA RC+F +    P+LP +   E
Sbjct: 232  SDQDRMRFETQEFYLKSPEEMARLFEGIPEALENTVRIAERCAFEIPFPGPLLPEYHIPE 291

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYF 357
              D     E  LR+    GL+ R         YH   ++ R+R D EL++I +M F+GYF
Sbjct: 292  GFD---SPEAYLRHLTYEGLKKR---------YHQITREIRERADLELSIIIQMGFTGYF 339

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DF+ +AK+  IPVGPGRGSGAGS+ AYAL IT+IDPL++ LLFERFLNP+R+SMPD
Sbjct: 340  LIVWDFVHFAKEQGIPVGPGRGSGAGSIVAYALGITNIDPLKYGLLFERFLNPERISMPD 399

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC  RR+EVI YV  KYG +RVAQIITFG+L+ KA ++DV R L +P+++ + L K
Sbjct: 400  FDIDFCYARREEVIDYVTRKYGKDRVAQIITFGTLKPKAVIKDVARVLGIPFAEANELTK 459

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            L+ +  A  V  +AI  + R   ARLA  D +  RL +I   L+GL RHASTHAAGIVIG
Sbjct: 460  LMGD--ASSVE-EAIQREPRL--ARLAEEDETYTRLFQIGSVLQGLSRHASTHAAGIVIG 514

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
               L+  VP+YRD ++    TQ++M+ +E  GL+K DFLGLKTLTL+  + + +      
Sbjct: 515  REALTNYVPLYRDPKTGDISTQYSMEHLEDCGLVKMDFLGLKTLTLITHTEELVRTHTPD 574

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             D   IP DD +T+ LL    +  +FQ ES GM+  L   +P+ IE++IAL +LYRPGP+
Sbjct: 575  FDTERIPEDDAQTFQLLAEGKSTCVFQFESEGMQNILRRAKPESIEELIALNALYRPGPM 634

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  +   K G+ KI   HP ++P+LKET GVI+YQEQVMQIAQ ++GY+L  AD+LRR
Sbjct: 635  QFIDQFIEAKQGRRKITYPHPDLEPILKETYGVIVYQEQVMQIAQKIAGYTLGGADILRR 694

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  E M K+KE+FI GA   G S+  A  +FELL  FA YGFNKSHAAAY+V++Y+
Sbjct: 695  AMGKKKPEVMAKEKEKFIKGAVAQGYSRQFAEELFELLIPFAGYGFNKSHAAAYSVLAYK 754

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYP EF+AA++T E+ N +K+ ++  + R   I+++PP +N     F V D +I
Sbjct: 755  TAYLKAHYPAEFMAANLTNEIGNPDKLAQYIGETRAMGIEVLPPDINASERYFTVRDGKI 814

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             Y L  IK VGT     I+    + PF S  DF  RVD + +NR+V+E+ + AG  D   
Sbjct: 815  VYGLVGIKNVGTAAVEEILGKRKEGPFTSFIDFLFRVDLRTVNRKVIETCIQAGVFDSLH 874

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R +L+ +L+ +  +   +++ +      +F   +    ++         ++  +   E
Sbjct: 875  PNRAELMHNLEALLAHVNRIKEQQEASQGFLFEETETQIREEFQFTPVEDWDTMEKLRYE 934

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            + +LGFYFS HPLD  + I  K           T      +L  ++ + ++  T+KG+R+
Sbjct: 935  RELLGFYFSSHPLDHLREIWEKGVNLDLSHPERTDPSRTYQLMGVLKTVREITTQKGNRM 994

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             + T  +     EA FFP
Sbjct: 995  AFGTIEDYRGSIEAVFFP 1012


>gi|157827786|ref|YP_001496850.1| DNA polymerase III subunit alpha [Rickettsia bellii OSU 85-389]
 gi|157803090|gb|ABV79813.1| DNA polymerase III subunit alpha [Rickettsia bellii OSU 85-389]
          Length = 1172

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1068 (39%), Positives = 628/1068 (58%), Gaps = 67/1068 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+  SSYS L  AL+   I++  ++ +  AI +TD  NLF +LEF+  A   G+QPI
Sbjct: 5    FIHLRTQSSYSFLASALTTEKIVELASSYKMAAICLTDKENLFGSLEFALYAIKKGLQPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L+I  +  +               I+L+     GY+ L++L S  +  +  K    
Sbjct: 65   HGVILNIQYETGV------------FAEILLIAKDETGYKNLLKLSSITFTTNDRKICNH 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L+E   EGLI L   + G I +    N  + AE      +++FGDR Y  + RH 
Sbjct: 113  ITFEDLKE-HQEGLITLCCYTEGVIGKCLLANKEEQAEMFARNLQEIFGDRFYFEIMRHD 171

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               ++  E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  V+
Sbjct: 172  LPEEQLIEDNYIKIASKLNIPLVATNKVLFSKKSMHDAHDVLLCISAGVTKEYPDRKTVS 231

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK---ECDDIQKE 306
             + Y K+  EM+ +F+DLP A+ENTV + +RC F    + P+LP F  K   E D I+KE
Sbjct: 232  ENCYFKSAKEMIELFADLPSAIENTVNLTQRCYFAAHTNPPMLPNFATKDISETDLIRKE 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363
             ++ L    +A L+ +     I+  +      +Y  RLD+ELN+I  M F+GYFLIV+DF
Sbjct: 292  AKDGL----LARLDTKFKSEHISIEHQESIKTEYFARLDYELNIICSMNFAGYFLIVSDF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNPDR+SMPDFDIDFC
Sbjct: 348  IKWSKKQGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPDRISMPDFDIDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P   
Sbjct: 408  QERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVPFSA 467

Query: 484  AHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAAGIV 533
             +PV+L QAI +      A   +           +  +L+ S  LEGL+RH+STHAAGIV
Sbjct: 468  INPVTLEQAIREVPELANAAKGNGLYNLEGELELIKLVLDTSLILEGLHRHSSTHAAGIV 527

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            I    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L ++ 
Sbjct: 528  IAGTDLVDIVPVYKDANSDMLVVGYSMKYCELAGLIKFDFLGLQTLTVITDCKKLLKEQN 587

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            +++D + + FDD +TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LYRPG
Sbjct: 588  IEIDFNDMTFDDEKTYQMLCKGKGVGVFQFESVGMKDALRRLKPDSIHDLIALGALYRPG 647

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  AD+L
Sbjct: 648  PMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADLL 707

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKKIK EM++Q+E F+ GA  N IS+  A +IF  +AKFA YGFNK+HAAAY VIS
Sbjct: 708  RRAMGKKIKAEMEQQEEIFVKGAIANNISEAQAKSIFVTVAKFAGYGFNKAHAAAYGVIS 767

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831
            YQTA++K +YP EF+ A + LE++N +KI  F Q+A+  NI+I+ P++N     F V   
Sbjct: 768  YQTAYLKANYPAEFVVACLNLELNNHDKINLFLQEAKDNNIKIIAPNINISGGYFSVKSV 827

Query: 832  ------------------------DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLE 866
                                    D+ I ++L AIKGV     + +  E +A   F S+ 
Sbjct: 828  IPQLDRSIHGDQLKDTAVKPQYDIDSSIIFALGAIKGVTPNFGKLVTDERNARGAFKSIV 887

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA-QWVEKNRTNKHEN 925
            DF  R+  K +N ++LE+L+ AG  D    +R+QL  S+  +  Y+  + E+  +N+   
Sbjct: 888  DFIERLPPKAINSKLLENLIKAGCFDELHDNRLQLFLSISKLLAYSVSYHEEQASNQFSL 947

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            I   +  + S +I +     + +++ F  E   +G + S HPL  YK I  ++ I    +
Sbjct: 948  I---KVSSLSKEILVSSDYADKNTLAFY-EFEAMGLFISNHPLTEYKEIFNRLNILSSAD 1003

Query: 986  SVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +  G N  + A V+ K+  +     R   +  S+P   +E + F
Sbjct: 1004 LHNNLPDGTNRVMIAGVIQKKDSRMSARGRFVTLVLSDPENIFELSIF 1051


>gi|33519751|ref|NP_878583.1| DNA polymerase III, alpha chain [Candidatus Blochmannia floridanus]
 gi|33504096|emb|CAD83357.1| DNA polymerase III, alpha chain [Candidatus Blochmannia floridanus]
          Length = 1166

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1048 (40%), Positives = 634/1048 (60%), Gaps = 73/1048 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P+FVHL V S YS+++G    N +L+K  +   PA+A+TD +NLF  ++F   +C  GI
Sbjct: 2    NPNFVHLHVRSDYSMIDGLSKTNALLEKAVSLNMPALALTDFSNLFGFIKFYDYSCKLGI 61

Query: 68   QPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +PI G   D  +QD +    N  K        +  LV   +GYQ L+EL+SR Y      
Sbjct: 62   KPIAGA--DFLIQDISCYSDNWSK--------LTCLVLNNQGYQHLVELISRAYKYKSNT 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  SWL E   EGLI+L+GG  G I +    N     EK LL + K F +R Y+ L
Sbjct: 112  NYPIIQRSWLMEY-NEGLILLSGGCDGDIGKYLLRNKRNDIEKTLLFYHKYFPNRYYIEL 170

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KD 244
             R  R ++       V+L+    LP+VATN+  F+ ++D++AH++ +A+    VV++ + 
Sbjct: 171  IRTGRVHEESYLKLAVELSRIKGLPVVATNDVRFVEKKDFQAHEIRVAIHAGVVVNKIQQ 230

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              + +   ++K+  EM  +F+D+PE+L NTVEIA+RC+F++    P LP+F         
Sbjct: 231  SNKYSAQQFMKSSQEMCHLFNDIPESLVNTVEIAQRCNFMINFKGPFLPKFPTGSL---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               EN L  +A  GLE RL      +  +      Y  RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STENFLVTQARLGLEKRLKFLFPNSKERQVKRSVYDIRLNQELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K NNIPVGPGRGSGA S+ AY L IT++DP++F LLFERFLNP+R+SMPD DID
Sbjct: 346  EFIQWSKDNNIPVGPGRGSGASSLVAYVLRITELDPIKFDLLFERFLNPERISMPDLDID 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RD VI +V   YG   V+QIITFG++ AKAA+RDVGRAL  PY  V+RL KLIP 
Sbjct: 406  FCMEHRDLVIDHVAQMYGSHAVSQIITFGTMAAKAAIRDVGRALGYPYVFVNRLAKLIPL 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A    ++ +     D  V  L+++S +LEG+ R+ S HA G+VI    ++ 
Sbjct: 466  EPGMTLR-KACTTINQLKLMYNTDEEVKILIDLSYQLEGIIRNVSKHAGGVVIAPNKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D   +  +TQF+   IE+ GLIKFDFLGL+TLT + +++  +  R  K      
Sbjct: 525  FSPLYYDDNYNHSMTQFDKDDIERIGLIKFDFLGLRTLTTVNRAIKMINDRKSKSNSLIC 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            +++LIP +D  ++ LL T  T GIFQLES G++  ++ ++PD  ED+IAL++L+RPGP+ 
Sbjct: 585  NINLIPLNDRNSFRLLQTAKTTGIFQLESKGIKMLIKRLKPDHFEDLIALIALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKIVSI------HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            + +V N  NRKNG+E I+S       H L+ P+LK T G+I+YQEQVMQIAQ+L+GY+L 
Sbjct: 645  SGMVDNFINRKNGRE-IISYPDVKWEHELLKPVLKSTYGIILYQEQVMQIAQVLAGYTLG 703

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            +AD+LRRA+GKK  E+M KQ+  F +GA +NGI++T++  IF+L+ KFA YGFNKSH+AA
Sbjct: 704  KADILRRAIGKKKYEDMVKQRAIFNAGAQRNGINQTLSKKIFDLMEKFAGYGFNKSHSAA 763

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+ISYQT W+K HYP EF+A+ ++ +MDNV +I     + R+  ++++ P++N+    F
Sbjct: 764  YALISYQTLWLKAHYPAEFMASILSSDMDNVNRIIILIHECRRMGLKVLSPNINSSRYFF 823

Query: 829  KVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V +N+ I Y + AIKG+G  +   I+ +   D  F SL DFC RVD+ K+N+R++E L+
Sbjct: 824  YVNNNQEIVYGIGAIKGIGKLSIDSIVASRDCDGEFHSLFDFCVRVDNSKVNQRIIEKLI 883

Query: 887  FAGALDCFGYSRMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI------- 938
            ++GA D FG  R +L+ SL+  I +  Q+ ++ +          + G F D I       
Sbjct: 884  YSGAFDFFGIHRSELISSLNVTICQAIQYAKRKQ--------CQQIGIFEDDIQEHTIVD 935

Query: 939  TLEKFSV-----ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-- 991
            T+ K +      +NS +    E+  LG Y + HP++ Y        +K Y   ++ I+  
Sbjct: 936  TIPKCNSVIKLHQNSLIILTKEKEALGLYLTDHPVNQYMN-----EVKQYIPEISKIQNV 990

Query: 992  ------GNNIRLAAMVVSKQQKKTRKGS 1013
                   N +    ++ S   K T+KG+
Sbjct: 991  LRKIVINNTVCTFGLLSSIHIKSTKKGN 1018


>gi|82703844|ref|YP_413410.1| DNA polymerase III, alpha subunit [Nitrosospira multiformis ATCC
            25196]
 gi|82411909|gb|ABB76018.1| DNA polymerase III, alpha subunit [Nitrosospira multiformis ATCC
            25196]
          Length = 1174

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1045 (40%), Positives = 626/1045 (59%), Gaps = 54/1045 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F+HL++HS YS+++G + ++  + K  A+  PA+A+TD +NLF  ++F Q+A   G++P
Sbjct: 6    TFIHLRLHSEYSVVDGIVRIDEAVAKAVAEGMPALALTDLSNLFGLIKFYQEARNKGLKP 65

Query: 70   IIGCQL----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            I+GC +    DID   + +              I+LL  +  GY  L  L+SR Y  +Q 
Sbjct: 66   IVGCDVWISNDIDRDKSFR--------------ILLLCQSYPGYLALCRLLSRAYRENQY 111

Query: 126  KQSVRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +    I  SWL   ++GTEGLI L+G + G I  A   N    A      + +LF  R Y
Sbjct: 112  RGRAEIRKSWLSASDLGTEGLIALSGANLGDIGLALIHNDLDQARTLAQEWTELFPGRFY 171

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHEL----PLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            + +QR           +VQ +         P+VAT+   +L+ EDY AH+  + ++   V
Sbjct: 172  IEVQRA---GHANAEALVQRSLALAAALRLPVVATHPVQYLNPEDYRAHEARVCISQGYV 228

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +  + RPR  T + Y K ++EM ++F+D+P AL NT+EIARRC+  L++    LP+F   
Sbjct: 229  LGDRRRPRHCTEEQYFKTQAEMSALFADIPSALANTMEIARRCNLALELGINRLPQFPTP 288

Query: 299  ECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
              + +    +  LRN+A  GLE R   L      +      YR RLDFE + I +M F+G
Sbjct: 289  NNESL----DLYLRNQASTGLEKRMRALFPDPDRRAAEMPKYRARLDFEADTIVQMGFAG 344

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI WAK+N++PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SM
Sbjct: 345  YFLIVADFINWAKQNDVPVGPGRGSGAGSLVAYSLGITDLDPLRYDLLFERFLNPERVSM 404

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQD R+ VI YV+ KYG E V+QI TFG++ AKA +RDVGR L +PY+ VD+L
Sbjct: 405  PDFDIDFCQDGREHVIEYVKQKYGAESVSQIATFGTMAAKAVVRDVGRVLDLPYNFVDQL 464

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KL+P +    +  +A  ++ +  +   A+  V  LLE++++LEGL R+   HA G++I 
Sbjct: 465  AKLVPFELGMTLK-KAREEEPQLNQRAEAEEEVRNLLELAERLEGLTRNVGMHAGGVLIA 523

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV- 594
               ++   P+Y     +  V+Q +   +EK GL+KFDFLGL+TLT+L  S+ ++ QR   
Sbjct: 524  AGKITDFCPVYCADGGESVVSQLDKDDVEKVGLVKFDFLGLRTLTILDWSVRYIRQRKSG 583

Query: 595  ---------KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
                        L  +P DD +TY L+     +GIFQ ES GM+  L+  +PD  ED+IA
Sbjct: 584  NTGNDSETRSFSLENLPLDDPDTYALMRQGNAVGIFQFESRGMKDLLQKARPDRFEDLIA 643

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            LV+LYRPGP+  I  +  RK+GK  +  + P + P+L+ T G+++YQEQVMQIAQ++ GY
Sbjct: 644  LVALYRPGPMSLIPEFIERKHGKRVVEYLDPRLKPILEPTYGIMVYQEQVMQIAQVIGGY 703

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL  AD+LRRAMGKK  EEM  Q++ F+SGA KNG+++  A  +F+L+ KFA YGFNKSH
Sbjct: 704  SLGSADLLRRAMGKKKPEEMALQRDIFVSGAVKNGLTEGDAAELFDLMEKFAGYGFNKSH 763

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AAAYA+I++QTA++K HYP EF++A+++ +MD+ +K+  F +D+    + ++PP +N   
Sbjct: 764  AAAYALIAFQTAYLKAHYPSEFMSATLSADMDDTDKVHIFFEDSIANGLAVLPPDINLSG 823

Query: 826  VDF-KVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLE 883
              F  V +  I Y L AIKG G +    I++A      F  L DFC RVD + +NRRV+E
Sbjct: 824  YRFVPVDEKTIRYGLGAIKGTGESAIAAIIQAREQGGAFSDLFDFCHRVDKRIVNRRVVE 883

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            SL+ AGA D     R  LL S+    + A+  E  R+    ++F  E G   ++  L K 
Sbjct: 884  SLIRAGAFDAIDTHRAALLASVGIALESAEQAE--RSVNQVSLFGEEMGVI-ERPALVKV 940

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
             V       +NE+  LG Y SGHP + Y+  L    ++     +   R   + LA +V +
Sbjct: 941  PVWPEKETLKNEKLALGLYLSGHPFNAYREELNHF-VRTRLNRLVPQREPQL-LAGIVYA 998

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYE 1028
             + + TR+G R+G +   + + + E
Sbjct: 999  IRTQVTRRG-RMGVIVLDDGSNQVE 1022


>gi|330985125|gb|EGH83228.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. lachrymans
            str. M301315]
          Length = 1173

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1067 (39%), Positives = 622/1067 (58%), Gaps = 69/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F +R Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPERFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173  NRNNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHN 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA        + Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLLPKDTTEDYEARRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEDPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             +V  + NRK+G+ ++   +P +D       P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 648  GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V D+ RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ L+ 
Sbjct: 826  TVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIR 885

Query: 888  AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929
            +GALD  G                +R  LL +L+   + A+   ++  + H ++F     
Sbjct: 886  SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFV 945

Query: 930  --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              +   +++     + S+++   R   E+  LG Y +GHP+D Y+  +R+       + +
Sbjct: 946  EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998

Query: 988  ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++   +   +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 999  IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|71733672|ref|YP_275963.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv.
            phaseolicola 1448A]
 gi|257487067|ref|ZP_05641108.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tabaci
            ATCC 11528]
 gi|289626019|ref|ZP_06458973.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aesculi
            str. NCPPB3681]
 gi|289651464|ref|ZP_06482807.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aesculi
            str. 2250]
 gi|71554225|gb|AAZ33436.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv.
            phaseolicola 1448A]
 gi|320323105|gb|EFW79194.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea
            str. B076]
 gi|320329623|gb|EFW85612.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea
            str. race 4]
 gi|330868557|gb|EGH03266.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aesculi
            str. 0893_23]
 gi|331009298|gb|EGH89354.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tabaci
            ATCC 11528]
          Length = 1173

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1067 (39%), Positives = 622/1067 (58%), Gaps = 69/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F +R Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPERFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173  NRNNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHN 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA        + Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             +V  + NRK+G+ ++   +P +D       P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 648  GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V D+ RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ L+ 
Sbjct: 826  TVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIR 885

Query: 888  AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929
            +GALD  G                +R  LL +L+   + A+   ++  + H ++F     
Sbjct: 886  SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFV 945

Query: 930  --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              +   +++     + S+++   R   E+  LG Y +GHP+D Y+  +R+       + +
Sbjct: 946  EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998

Query: 988  ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++   +   +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 999  IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|330968945|gb|EGH69011.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aceris
            str. M302273PT]
          Length = 1173

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1067 (39%), Positives = 622/1067 (58%), Gaps = 69/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173  NRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHN 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA        + Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPG + +
Sbjct: 588  IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGLLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             +V  + NRK+G+ ++   +P +D       P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 648  GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N  K+    ++ R   +++  P VNT    F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTNKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V D+ RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ L+ 
Sbjct: 826  TVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIR 885

Query: 888  AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929
            +GALD  G                +R  LL +L+   + A+   ++R + H ++F     
Sbjct: 886  SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFV 945

Query: 930  --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              +   +++     + S+++   R   E+  LG Y +GHP+D Y+  +R+       + +
Sbjct: 946  EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998

Query: 988  ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++   +   +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 999  IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|33151745|ref|NP_873098.1| DNA polymerase III subunit alpha [Haemophilus ducreyi 35000HP]
 gi|33147966|gb|AAP95487.1| DNA polymerase III alpha subunit [Haemophilus ducreyi 35000HP]
          Length = 1158

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1053 (40%), Positives = 626/1053 (59%), Gaps = 56/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S++ G   +  ++   AA Q  A+A+TD +N    ++F  ++  AG++
Sbjct: 4    PRFVHLKVHSDFSMINGLAKVKALVKTAAAKQMAAMALTDFSNFCGLVKFYGESLTAGLK 63

Query: 69   PIIGCQL----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            PIIG  +    D   +D  ++T              LL    +GY  +  L+SR Y   Q
Sbjct: 64   PIIGADIYVRSDPTSEDIFELT--------------LLAKNNQGYHNITVLLSRAY--QQ 107

Query: 125  GKQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            G     I   +WL E+  EG+I+L+GG SG + +A    + Q A   +  +++ F D  Y
Sbjct: 108  GYVEFPIVEKAWLAEL-NEGIIVLSGGRSGDVGKALLKENEQEAATLVAFYQQYFADHYY 166

Query: 184  VNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            ++L R    D  R   Q VQ A  ++LPLVA N+ +FL E+D++AH++ +A+  S  +  
Sbjct: 167  LSLCRTGRSDEERYLQQAVQFAKKYQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDD 226

Query: 243  KDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RP + +P  Y ++  EM ++F+DLP+AL N+++IA RC+  +++    LP F   E  
Sbjct: 227  PKRPQKYSPQQYFRSEEEMCALFADLPQALMNSIQIAMRCNVTIRLGEYFLPNFPTGEL- 285

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L  K+  GLE RLA     A  +      Y +RL  EL+VI +M F GYFL
Sbjct: 286  ----STEDFLIKKSQEGLEERLAFLFPDAETRKNKRSVYDERLQVELDVINQMGFPGYFL 341

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL+F LLFERFLNP+R+SMPDF
Sbjct: 342  IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLQFDLLFERFLNPERISMPDF 401

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KL
Sbjct: 402  DVDFCMDGRDHVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKL 461

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    
Sbjct: 462  IPADPGMTLA-KAFEAEPKLPELYNADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTA 520

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595
            ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR  +   
Sbjct: 521  ITDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLTREGK 580

Query: 596  --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              + +  IP DD  ++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPG
Sbjct: 581  PPIRIENIPLDDKPSFKLLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPG 640

Query: 654  PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+++ +V N  +RK+G E++        H  + P+L+ T G+I+YQEQVMQIAQ L+GY+
Sbjct: 641  PLESGMVQNFIDRKHGIEEVSYPDAQYQHECLKPILEPTYGIIVYQEQVMQIAQELAGYT 700

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM  Q++ F  GA + GI   +A+ IF+L+ KFA YGFNKSH+
Sbjct: 701  LGSADLLRRAMGKKKPEEMAAQRDIFEKGAIEKGIDGQLAIKIFDLVEKFAGYGFNKSHS 760

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+K HYP EF+AA MT EMDN +KI     +     + ++PP VN+   
Sbjct: 761  AAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECINMGLTVVPPDVNSGKH 820

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884
             F V +  +I Y L AIKGVG      I+EA +    F  L D  +RVD KK+NRR  ES
Sbjct: 821  RFSVNEKGQIVYGLGAIKGVGEGPIEAILEARNKGGIFKDLFDLTARVDLKKINRRTFES 880

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ +GA D  G  R  L+++L++  K +    K       ++F    G  ++     + +
Sbjct: 881  LIMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMF----GVLTETPEQVQKA 936

Query: 945  VENS-----SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
              N+         E E+  LG Y SGHP+  +   L         E   T RG  + +A 
Sbjct: 937  YANTPKWSEQAVLEGERTTLGLYLSGHPIGRFLKELAHYAPTRLNELQPTRRGQMVTVAG 996

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++V+ +   T++GSR+G  T  + A + +   F
Sbjct: 997  IIVASRIAVTKRGSRLGIATLEDRAGKIDITLF 1029


>gi|28868755|ref|NP_791374.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato
            str. DC3000]
 gi|28851994|gb|AAO55069.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato
            str. DC3000]
          Length = 1173

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1067 (39%), Positives = 623/1067 (58%), Gaps = 69/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  + +   PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLTVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +R  D       V LA  H  PLVATN+  F+++ D+EAH+  + +     +    R   
Sbjct: 173  NRANDEEHLHAAVALAERHGAPLVATNDVRFINQADFEAHETRVCIGEGRALDDPRRSHN 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FSDLPEALEN+VEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENSVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA        + Y    Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVDEAPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             +V  + NRK+G+ ++   +P +D       P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 648  GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V D+ RI Y L AIKGVG      I +A    PF  L DFC+RVD K++N+R L+ L+ 
Sbjct: 826  TVSDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDGLIR 885

Query: 888  AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929
            +GALD  G                +R  LL +L+   + A+   ++  + H ++F     
Sbjct: 886  SGALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGGLFV 945

Query: 930  --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              +   +++     + S+++   R   E+  LG Y +GHP+D Y+  +R+       + +
Sbjct: 946  EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998

Query: 988  ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++   +   +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 999  IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|330878150|gb|EGH12299.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea
            str. race 4]
          Length = 1154

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1067 (39%), Positives = 622/1067 (58%), Gaps = 69/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F +R Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPERFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173  NRNNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHN 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA        + Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             +V  + NRK+G+ ++   +P +D       P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 648  GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V D+ RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ L+ 
Sbjct: 826  TVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIR 885

Query: 888  AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929
            +GALD  G                +R  LL +L+   + A+   ++  + H ++F     
Sbjct: 886  SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFV 945

Query: 930  --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              +   +++     + S+++   R   E+  LG Y +GHP+D Y+  +R+       + +
Sbjct: 946  EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998

Query: 988  ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++   +   +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 999  IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|325982112|ref|YP_004294514.1| DNA polymerase III, alpha subunit [Nitrosomonas sp. AL212]
 gi|325531631|gb|ADZ26352.1| DNA polymerase III, alpha subunit [Nitrosomonas sp. AL212]
          Length = 1167

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1045 (41%), Positives = 627/1045 (60%), Gaps = 54/1045 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+F+HL++HS YS+L+  + +++++ K  ADQ PA+A+TD  NLF  ++F Q A   GI+
Sbjct: 5    PAFIHLRMHSEYSILDSTIRIHDVVKKAVADQMPALALTDLANLFGLVKFYQAAYKNGIK 64

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+GC        ++ + N+     P    +++L  T  GY  L  L+SR Y  +Q +  
Sbjct: 65   PILGC--------DIWIANESDRSKPI--RLLVLCQTHAGYLLLSRLLSRAYRENQFQNR 114

Query: 129  VRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              I  SWLQ  + GTEGLI L+G   G I  +   N+   AE ++  +  LF DR Y+ +
Sbjct: 115  AEIKESWLQPDDWGTEGLIALSGARLGDIGLSLLQNNILQAEIQVQKWATLFPDRFYLEI 174

Query: 187  QRHRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            QR        E+ +VQ    LA    LP+VAT    FL+ EDY+AH+  + +A   ++  
Sbjct: 175  QRD---GHANEAMLVQHSLALAKKFNLPVVATQAVQFLNVEDYQAHEARVCIAEGYILED 231

Query: 243  KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            K R +  T   Y K ++EM  +F+D+P AL NT+EIA+RC+ IL++    LP F     +
Sbjct: 232  KRRQKNFTQQQYFKTQTEMTQLFADIPAALTNTIEIAKRCNLILELGVNRLPLFPTPNNE 291

Query: 302  DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
             +    +  LR++A  GL  R+      A  +      Y+ RL+FE+N I +M F+GYFL
Sbjct: 292  SL----DQYLRSQAELGLIKRMTSLFPDAEMRNDRITQYQSRLEFEVNTIIQMGFAGYFL 347

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFI WAK NN+PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDF
Sbjct: 348  IVADFINWAKHNNVPVGPGRGSGAGSLVAYSLGITDLDPLRYDLLFERFLNPERISMPDF 407

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFCQDRR+ VI YV+ +YG  +V+QI TFG++ AKA +RD+GR + +PY+ VD+L KL
Sbjct: 408  DIDFCQDRRELVIEYVKQRYGIGKVSQIATFGTMAAKAVIRDIGRVMDLPYNFVDQLAKL 467

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP +    ++L+           R  +  V  LLE+++ LEG+ R+   HA G++I    
Sbjct: 468  IPFEIG--MTLKKARQLEPQLNQRAEEEDVRNLLELAESLEGITRNVGMHAGGVLIASSE 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD- 597
            ++   P+Y     D  V+Q +   +EK GL+KFDFLGL+TLT+L +++ ++ Q    +D 
Sbjct: 526  ITDFCPIYCTESGDSVVSQLDKDDVEKIGLVKFDFLGLRTLTILDRAVGYIRQLHPNIDS 585

Query: 598  -------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                   L  +P DD  TY L+     +GIFQ ES GM   L+  +PD  EDIIALV+LY
Sbjct: 586  PESRLFSLETLPLDDDATYALMRKGNAVGIFQFESRGMIDLLQKAKPDHFEDIIALVALY 645

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  + +RK+G+++I  + P ++P+L  T G++IYQEQVMQIAQ++ GYSL  A
Sbjct: 646  RPGPMDLIPEFIDRKHGRKQIEYLDPRLEPILGPTYGIMIYQEQVMQIAQVIGGYSLGSA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM +Q++ F+SGA  NG+S+  A  +F L+ KFA YGFNKSHAAAYA
Sbjct: 706  DLLRRAMGKKKVEEMAQQRDIFVSGAINNGLSEDKATELFGLMEKFAGYGFNKSHAAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-K 829
            +I++QTA++K HYP EF+AA ++ +MD+ +K+  F +D+    I I+PP +N     F  
Sbjct: 766  LIAFQTAYLKAHYPAEFMAACLSADMDDTDKVHIFVEDSIANGIIILPPDINLSDYRFIP 825

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V    I + L A+KG G +    I+       PF  L DFC+RVD +  NRRV+ESL+  
Sbjct: 826  VDSKNIRFGLGAVKGTGESAVNSIIAVRRQTGPFTDLFDFCNRVDRRIANRRVMESLIRV 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R  L+ S+    + A+  + ++++   N+F         +  L +    + 
Sbjct: 886  GAFDIINPNRASLMASVGLAIESAE--QTSQSSNQINLFGETSSDAQMQPQLIQAESWHD 943

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              +   E+  LG+YFSGHP D Y   L+   I    + +   R   + LA ++ S + + 
Sbjct: 944  REKLHQEKIGLGYYFSGHPFDTYASELKHF-ICTRLDRLNPQREPQL-LAGIIHSIRTQM 1001

Query: 1009 TRKG-----------SRIGWVTFSE 1022
            TR+G           +RI  V FSE
Sbjct: 1002 TRRGKMGVINLDDGKARIEVVIFSE 1026


>gi|213969133|ref|ZP_03397272.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato
            T1]
 gi|301383972|ref|ZP_07232390.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato
            Max13]
 gi|302064142|ref|ZP_07255683.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato
            K40]
 gi|213926131|gb|EEB59687.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato
            T1]
          Length = 1173

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1067 (39%), Positives = 623/1067 (58%), Gaps = 69/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  + +   PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLAVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +R  D       V LA  H  PLVATN+  F+++ D+EAH+  + +     +    R   
Sbjct: 173  NRANDEEHLHAAVALAERHGAPLVATNDVRFINQADFEAHETRVCIGEGRALDDPRRSHN 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FSDLPEALEN+VEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENSVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA        + Y    Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVDEAPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             +V  + NRK+G+ ++   +P +D       P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 648  GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V D+ RI Y L AIKGVG      I +A    PF  L DFC+RVD K++N+R L+ L+ 
Sbjct: 826  TVSDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDGLIR 885

Query: 888  AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929
            +GALD  G                +R  LL +L+   + A+   ++  + H ++F     
Sbjct: 886  SGALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGGLFV 945

Query: 930  --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              +   +++     + S+++   R   E+  LG Y +GHP+D Y+  +R+       + +
Sbjct: 946  EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998

Query: 988  ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++   +   +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 999  IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|270264805|ref|ZP_06193069.1| DNA polymerase III, alpha subunit [Serratia odorifera 4Rx13]
 gi|270041103|gb|EFA14203.1| DNA polymerase III, alpha subunit [Serratia odorifera 4Rx13]
          Length = 1183

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1058 (41%), Positives = 625/1058 (59%), Gaps = 49/1058 (4%)

Query: 3    QYLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            +YL+ + P F+HL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   
Sbjct: 18   RYLDMAEPRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGS 77

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A  AGI+PIIG    +          Q +     +  + +L +  +GYQ L  L+SR Y 
Sbjct: 78   AHGAGIKPIIGADFHV----------QSEVLGDELAQLTVLAANNDGYQNLTLLISRAYQ 127

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
               G     I   WL E   EGLI+L+G   G + +     + Q  ++ L  +++ F D 
Sbjct: 128  RGYGAAGPIIDRDWLIE-HREGLILLSGARQGDVGKFLLRGNQQQVDQCLDFYQQYFPDS 186

Query: 182  LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ L R  R  +       V LA    LP+VATN+  FL E+D++AH++ +A+     +
Sbjct: 187  YYLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTL 246

Query: 241  SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                RPR  +   Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++    LP+F    
Sbjct: 247  DDPKRPRNYSTQQYMRSADEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQF---P 303

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGY 356
              D+  E+   L++K   GLE RL          AQ   +Y +RLD EL VI +M F GY
Sbjct: 304  TGDMTTEDFLVLKSKE--GLEERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGY 361

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMP
Sbjct: 362  FLIVMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 421

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC ++RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ 
Sbjct: 422  DFDVDFCMEKRDLVIEHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 481

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KL+P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI  
Sbjct: 482  KLVPPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAP 540

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
              ++   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K 
Sbjct: 541  TKITDFAPLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKS 600

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+R
Sbjct: 601  GLEPIDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFR 660

Query: 652  PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PGP+ + +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+G
Sbjct: 661  PGPLQSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAG 720

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            Y+L  AD+LRRAMGKK   EM KQ+  F  GA   GI   ++V IF+L+ KFA YGFNKS
Sbjct: 721  YTLGGADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKS 780

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+ 
Sbjct: 781  HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSG 840

Query: 825  CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSKKLNRR 880
               F V D   I Y + AIKGVG      I+EA        F  L D C+R D KKLNRR
Sbjct: 841  QYHFHVNDEGEIVYGIGAIKGVGEGPIEAILEARNSGEQGYFKDLFDLCARSDVKKLNRR 900

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
            +LE L+ +GA D  G  R  L+ SL +  K A    K       ++F    G  ++    
Sbjct: 901  ILEKLIMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMF----GVLAEAPEQ 956

Query: 941  EKFSVEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNN 994
             + S  N       V  + E+  LG Y +GHP+  Y K I R  G +  ++   T RG  
Sbjct: 957  VEQSYANVPRWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKM 1016

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 1017 TTAVGLVIASRVMVTKRGNRIGICTLDDRSGRLEVMLF 1054


>gi|157376278|ref|YP_001474878.1| DNA polymerase III subunit alpha [Shewanella sediminis HAW-EB3]
 gi|157318652|gb|ABV37750.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 1157

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1048 (40%), Positives = 616/1048 (58%), Gaps = 46/1048 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G   +  I+ K+     PA+A+TD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDFSMSDGLAKVKPIIGKVTELGMPAVALTDQTNLCGLVKFYGACHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P+IG    + +    K           + S+ +L    +GY  L  L+S  YL       
Sbjct: 64   PLIGADFWVKVPGFDK----------DLCSVTVLAMDNDGYLNLTLLISDAYLRGHIDDR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +  ++GLI+L+GG  G + RA    +    +  +  ++  F DR Y+ L R
Sbjct: 114  AVIDHGWLAKY-SKGLILLSGGRLGDVGRALLKGNQAQVDSLVEFYQTHFPDRYYLELLR 172

Query: 189  HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D  R   + V+LA    LP+VATN  +F S + +EAH++ +A++    ++   RP+
Sbjct: 173  TGRPDEERYLHMAVELATEKGLPVVATNQVVFNSPDLFEAHEIRVAISDGFTLADPRRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              + + Y K+  +M  +F D+PEA++NTVEIA+RC+  +++    LP F   +       
Sbjct: 233  KYSAEQYFKSSEQMCELFEDIPEAIDNTVEIAKRCNVTVRLGEYFLPNFPTGDL-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L   +  GLE RL         +      Y +RLD EL V+ +M F GYFLIV +F
Sbjct: 288  IEDFLVEVSEKGLEERLEFLFPDPEVRAEKRPAYDERLDVELKVVNQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW K  +IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDFC
Sbjct: 348  IQWGKDQDIPIGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ K++P +P
Sbjct: 408  MDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMVPAEP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   +   +E+  AD  V  L+++ + LEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEVEPALQESYDADEEVKDLIDMCRTLEGVTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +  +     V +
Sbjct: 527  PIYCDAEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKLKRLGKDPVRI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  ESIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N   RK+G+E +        H  +  +L+ T G+I+YQEQVMQIAQ+L+GYSL  AD
Sbjct: 647  MVDNFIERKHGREAVSYPDAEYQHESLQWVLEPTYGIILYQEQVMQIAQVLAGYSLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA  NGI   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRGTFEEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTHYP EF+AA M+ +MDN +KI     +  +  + ++PP VN   + F V 
Sbjct: 767  VSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVILVDECERMGMPLLPPDVNKGLLKFNVD 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            D  +I Y + AIKGVG      I+ A  D PF  L DFC+RVD KKLN+R++E L+ AGA
Sbjct: 827  DEGKIVYGIGAIKGVGDGPVESILSARKDGPFKDLFDFCARVDLKKLNKRIMEKLICAGA 886

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--SDKITLEKFSVENS 948
            LD  G  R  +L +L    + A     ++  K E I  H+      SD   +++  VE +
Sbjct: 887  LDNLGPHRAAMLATLPEAIRAA-----DQNAKAEAIGQHDMFGLLNSDPEDVKQQFVECT 941

Query: 949  ----SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ 
Sbjct: 942  PWPDKVWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVVAT 1001

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++GS++G VT  + +   E   F
Sbjct: 1002 RVMMTKRGSKMGLVTLDDKSARLEVMLF 1029


>gi|330894609|gb|EGH27270.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. mori str.
            301020]
          Length = 1173

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1067 (39%), Positives = 621/1067 (58%), Gaps = 69/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+ +TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVGVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173  NRANDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHN 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA        + Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AG +KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGRVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             +V  + NRK+G+ ++   +P +D       P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 648  GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V D+ RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ L+ 
Sbjct: 826  TVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIR 885

Query: 888  AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929
            +GALD  G                +R  LL +L+   + A+   ++  + H ++F     
Sbjct: 886  SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFV 945

Query: 930  --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              +   +++     + S+++   R   E+  LG Y +GHP+D Y+  +R+       + +
Sbjct: 946  EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998

Query: 988  ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++   +   +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 999  IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|291086159|ref|ZP_06354987.2| DNA polymerase III, alpha subunit [Citrobacter youngae ATCC 29220]
 gi|291068957|gb|EFE07066.1| DNA polymerase III, alpha subunit [Citrobacter youngae ATCC 29220]
          Length = 1144

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1043 (40%), Positives = 616/1043 (59%), Gaps = 60/1043 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDID--- 78
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G    +    
Sbjct: 1    MIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFHVRSEL 60

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
            + D L               + +L +   GYQ L  L+S+ Y    G +   I   WL E
Sbjct: 61   LGDELT-------------QLTVLAANNTGYQNLTLLISKAYQRGYGAEGPVIDRDWLVE 107

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE- 197
            +  EGLI+L+GG  G + R+    +S + ++ +  +++ F +  ++ L R    D     
Sbjct: 108  L-KEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPNSYFLELIRTGRQDEENYL 166

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKN 256
               V+LA T  LP+VATN+  FL   D++AH++ +A+     +    RPR  +   Y+++
Sbjct: 167  HAAVELAETRGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRNYSAQQYMRS 226

Query: 257  RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
              EM  +FSD+PEAL+NTVEIA+RC+  +++    LP+F   +        E+ L  K+ 
Sbjct: 227  EEEMCELFSDIPEALQNTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDFLVAKSK 281

Query: 317  AGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
             GLE RL         +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +P
Sbjct: 282  EGLEQRLEFLFPDPEERAKRRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNGVP 341

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +
Sbjct: 342  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 401

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   ++ +A  
Sbjct: 402  VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLA-KAFE 460

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
             + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D +   
Sbjct: 461  AEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLH 520

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHET 608
            PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     +D++ IP DD ++
Sbjct: 521  PVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKS 580

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKN 666
            + +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+
Sbjct: 581  FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 640

Query: 667  GKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ LSGY+L  AD+LRRAMGKK 
Sbjct: 641  GREEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKK 700

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             EEM KQ+  F  GA K G+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K 
Sbjct: 701  PEEMAKQRGTFEEGAKKRGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 760

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLA 840
            HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + 
Sbjct: 761  HYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIG 820

Query: 841  AIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AIKGVG      I+EA  +   F  L D C+R D KKLNRRVLE L+ +GA D  G  R 
Sbjct: 821  AIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRA 880

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SV 950
             L+ SL +  K A    K       ++F    G  ++    E   +E S          V
Sbjct: 881  ALMNSLSDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQV 932

Query: 951  RFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
              + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A +V++ +   T
Sbjct: 933  VLDGERETLGLYLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVT 992

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
            ++G+RIG  T  + +   E   F
Sbjct: 993  KRGNRIGICTLDDRSGRLEVMLF 1015


>gi|78357239|ref|YP_388688.1| DNA polymerase III subunit alpha [Desulfovibrio desulfuricans subsp.
            desulfuricans str. G20]
 gi|78219644|gb|ABB38993.1| DNA polymerase III, alpha subunit [Desulfovibrio desulfuricans subsp.
            desulfuricans str. G20]
          Length = 1165

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1044 (40%), Positives = 630/1044 (60%), Gaps = 37/1044 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL  H+ YSLL+GA+ L ++ +K       A+AITD  N++ A+ F Q A   G++
Sbjct: 2    PQFVHLHCHTEYSLLDGAIRLKDLCEKAKEFDMSAVAITDHGNMYGAVYFYQMAQKMGLK 61

Query: 69   PIIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGC++ +   D+  K  +  K  +     +VLL     GY  L +LV+R +  +    
Sbjct: 62   PIIGCEVYVAHGDHTDKTGDMAKKRY----HLVLLAQNRTGYHNLAKLVTRGFT-EGFHY 116

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+    L++  +EG+I L+   +G I RA        A +    + +++ DR Y+ +Q
Sbjct: 117  KPRVSKDLLRQY-SEGIIALSACLAGEIPRALLNEGMDRAIELAREYAEIYPDRFYLEVQ 175

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             + G     E   ++++LA    LPLVATN+  +L + D EAHD L+ +     V+ + R
Sbjct: 176  SN-GLKEQDELNDKLIELAGITGLPLVATNDCHYLEKTDVEAHDTLLCIQTGAKVTDERR 234

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R  T + Y K+  EM + F+ +PEA+ENTV+IA +    L +     P +   E   + 
Sbjct: 235  MRFETTELYYKSPDEMAAAFAHVPEAIENTVKIAGQIDVTLDLGNYYFPNYELPEGMTL- 293

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               E+E R  +  GL+ RL             Y QRL+ EL+VI  M F GYFLIV DFI
Sbjct: 294  ---EDEFRKLSHEGLQKRLEILPYRDQIDEPAYWQRLEKELDVICSMGFPGYFLIVQDFI 350

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAK N IPVGPGRGS AGS+ A+AL IT++DP+ ++LLFERFLN +R+SMPD D+DFC+
Sbjct: 351  NWAKDNKIPVGPGRGSAAGSIVAWALKITNLDPIPYNLLFERFLNNERVSMPDIDVDFCE 410

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR EVI+YV  KYG + VAQI TFG ++AKA +RDV RAL + +   DR+ KLIP D  
Sbjct: 411  RRRGEVIQYVGRKYGEDSVAQITTFGKMKAKAVVRDVARALGLSFQDGDRIAKLIPEDLK 470

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  +   +     DP + +LL+IS +LEGL RHASTHAAG+VI D+P+ + +P
Sbjct: 471  MTIK-KALDMEPDLKTLYTNDPQIRKLLDISMRLEGLSRHASTHAAGVVISDKPMFEYLP 529

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPF 603
            +YRD +  + VTQF+MK +EK GL+KFDFLGL+T+TL+Q +LD +A +G+   DL  +  
Sbjct: 530  LYRDKKGGI-VTQFDMKIVEKVGLVKFDFLGLRTMTLVQDALDLIAMQGLTPPDLDTMSL 588

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            +D ETY L +   T G+FQ+ESSGMRQ L  ++P C +D+IA+++LYRPGP+ + +V  +
Sbjct: 589  EDKETYELYSRGETDGVFQVESSGMRQYLRMLRPSCFDDVIAMLALYRPGPLGSGMVDEF 648

Query: 662  NNRKNGKEKIVSIHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
              RK+G  ++   +PL  +   L++T GVI+YQEQVMQIAQ+++ Y+L  AD+LRRAMGK
Sbjct: 649  IKRKHG--EVAVTYPLESLKDCLRDTYGVIVYQEQVMQIAQIVANYTLGGADLLRRAMGK 706

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  E M +++ +F  GA +N + +  A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA++
Sbjct: 707  KNAEAMAEERIKFTKGAKENNVPEAKATEIFDLMEKFAEYGFNKSHSAAYALISYYTAYL 766

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYPVEF+AA MT EM+N EK+ K+    +   ++++ P+V     +F V D ++ Y L
Sbjct: 767  KVHYPVEFMAALMTSEMNNQEKVLKYVACCKDMGVEVLAPNVQISRREFSVLDGKVTYGL 826

Query: 840  AAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
              IK VG    R I+ A   D PF S+ D C RV+ +K+ +RVLE+L+ +GA DC G +R
Sbjct: 827  GGIKNVGDEAIREIVRAREEDGPFQSMLDLCMRVNLRKVTKRVLENLIKSGACDCLGCTR 886

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---------GTFSDKITLEKFSVENSS 949
              ++  LD +   AQ   K + +   ++F+  +         G    + ++E++  E   
Sbjct: 887  QGMVAGLDTVVARAQKKAKEKASNQISMFSVMEQEPQTCPGLGFDCPEQSMEEWDDEE-- 944

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             +   E+  LGFY S HPL  Y+  + ++ +   E+        + + A +V S ++  T
Sbjct: 945  -KLRKEKEALGFYLSSHPLQPYRKEIFRLRLTPLEDCREMGPEQSFKSAVLVTSIKEILT 1003

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            +KG R+ +    +     E  FFP
Sbjct: 1004 KKGHRMAFCQVEDLTASGECIFFP 1027


>gi|209695836|ref|YP_002263766.1| DNA polymerase III subunit alpha [Aliivibrio salmonicida LFI1238]
 gi|208009789|emb|CAQ80096.1| DNA polymerase III, alpha chain [Aliivibrio salmonicida LFI1238]
          Length = 1159

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1050 (40%), Positives = 618/1050 (58%), Gaps = 53/1050 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS +SL++G   +  ++ K+A    PA+ +TD  NL   +++   A  AGI+PI
Sbjct: 6    FVHLRVHSDFSLIDGLSKVPPLVKKMAELNMPAMGLTDFTNLCGLVKYYFAAHGAGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    +      + T  G   F    ++ +L    EGY+ L  L+S+ YL    + +  
Sbjct: 66   IGADFKV------QSTEFGNELF----NLTVLAKNNEGYKNLTLLISKAYLRGHVQHTPV 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   WL E   EGLI+L+G  +G + +A    + ++  + +  +K  F D  Y+ L R  
Sbjct: 116  MDKEWLIE-HKEGLIILSGAKNGDVGKALLKGNQELVNECVDFYKTYFPDHYYLELIRTG 174

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D        V LA    LP+VATN+  F+  +D++AH++ +A+     +    RP+  
Sbjct: 175  RVDEDSYLHFAVDLAEKEGLPVVATNDVCFIKADDFDAHEIRVAIHDGFTLEDPRRPKNY 234

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   YL+   EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       + E
Sbjct: 235  SSQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPTEGM-----KIE 289

Query: 309  NELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            + L  K+  GLE RLA        +     +Y +RL  EL+VI +M F GYFLIV +FIQ
Sbjct: 290  DFLVKKSQEGLERRLAFLFPDEKVRLERRPEYDERLQIELDVINQMGFPGYFLIVMEFIQ 349

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            W+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDFC D
Sbjct: 350  WSKDNLIPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMD 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            +RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDRL KLIP DP  
Sbjct: 410  KRDKVIEHVAEIYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKLIPTDPGM 469

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++ +A   + +  E   AD  V  L+++ + LEG  R+A  HA G+VI    ++   P+
Sbjct: 470  TLA-KAFEAEPQLPELYNADEEVRALIDMCRILEGCTRNAGKHAGGVVISPTTITDFSPL 528

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSL 600
            Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V +  
Sbjct: 529  YCDADGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRREKEGKEAVRIES 588

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD  ++ LL    T  +FQLES GM+  ++ +QPD  EDIIALV+L+RPGP+ + +V
Sbjct: 589  IPLDDQASFKLLQNSETTAVFQLESRGMKDLIKRLQPDSFEDIIALVALFRPGPLQSGMV 648

Query: 661  YN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             N  +RK+G+E++        H  +   L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+L
Sbjct: 649  DNFIDRKHGREEVSYPDVNWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGGADML 708

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+AAYA++S
Sbjct: 709  RRAMGKKKPEEMAKQRGTFKDGAIANGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVS 768

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-D 832
            YQT W+KTHYP EF+AA MT +MDN +KI     +  +  ++++PP VN     F V  D
Sbjct: 769  YQTLWLKTHYPAEFMAAVMTADMDNTDKIIGLVDECFRMKLKVLPPDVNAGLYRFNVDED 828

Query: 833  NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I Y + AIKGVG     +I+EA +    F  L DFCSR+D+KK N+R++E L+ +GAL
Sbjct: 829  GAIVYGIGAIKGVGEGPIENIIEARNKGGYFRDLFDFCSRIDTKKTNKRIVEKLIRSGAL 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS--- 948
            D  G  R  L+ S+++  K A    +  +    ++F          +T     VE +   
Sbjct: 889  DRLGPHRAALMASVEDAMKAAGQHHQAESFGQSDMFG--------VLTQAPEEVEQAYTH 940

Query: 949  ------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                   V  E E+  LG Y +GHP++ Y   L +       ++  T R   + +A +V+
Sbjct: 941  VPRWPEKVWLEGERETLGLYLTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVAGLVI 1000

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++GSRIG +T  + +   E   F
Sbjct: 1001 AARVMTTKRGSRIGLMTLDDRSGRMEVMLF 1030


>gi|84389777|ref|ZP_00991329.1| DNA polymerase III subunit alpha [Vibrio splendidus 12B01]
 gi|84376878|gb|EAP93752.1| DNA polymerase III subunit alpha [Vibrio splendidus 12B01]
          Length = 1159

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1053 (40%), Positives = 619/1053 (58%), Gaps = 55/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A   G++
Sbjct: 4    PKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHGCGVK 63

Query: 69   PIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PIIG    +   D  D L               + ++ +  +GY  L  L+S+ YL    
Sbjct: 64   PIIGADFLMQSPDFGDELT-------------KLTVIATNNKGYNNLTLLISKAYLRGHV 110

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            +    I   WL E   EGLI+L+G   G I +A    + ++    +  +K  F DR Y+ 
Sbjct: 111  QHQPVIDKEWLIE-HAEGLILLSGAKEGEIGKALLKGNRELVASSVEFYKTHFADRFYLE 169

Query: 186  LQRHRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            L R    D   ES +   ++LA   +LP+VATN  +F+SE+ ++AH++ +A+     +  
Sbjct: 170  LIRTGRPDE--ESYLHFALELAEQEDLPVVATNEVVFISEDLFDAHEIRVAIHDGFTMVD 227

Query: 243  KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RP+  +   YL++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP F  +   
Sbjct: 228  PRRPKNYSSQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTEGL- 286

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L  K+  GLE RLA        +     +Y +RL  EL V+  M F GYFL
Sbjct: 287  ----AIEDFLIKKSEEGLERRLAFLFPDEKVRAERRPEYDERLKIELEVVNNMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL
Sbjct: 403  DIDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKL 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +P DP   +    +A+ +   E    D  V  L++  + LEG  R+A  HA G+VI    
Sbjct: 463  VPPDPGMTLEKAFLAEPA-LPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTT 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595
            ++   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K   
Sbjct: 522  ITDFAPIYADAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKEGK 581

Query: 596  --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              V +  IP DD  +++LL    T  +FQLES GM+  ++ +QPD  EDIIALV+L+RPG
Sbjct: 582  EPVRIESIPLDDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDSFEDIIALVALFRPG 641

Query: 654  PIDNIVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V N  +RK+G+E +        H  +   L+ T G+I+YQEQVMQIAQ+L+GY+
Sbjct: 642  PLQSGMVDNFIDRKHGREAVSYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYT 701

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+
Sbjct: 702  LGGADMLRRAMGKKKPEEMAKQRGTFKEGAEANGVDGELSMKIFDLVEKFAGYGFNKSHS 761

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N+   
Sbjct: 762  AAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVIGLVDECFRMKLKLLPPDINSGLY 821

Query: 827  DFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884
             F V  D  I Y + AIKGVG      I+EA +    F  L DFC+R+D KK+N+RV+E 
Sbjct: 822  RFNVDEDGAIVYGIGAIKGVGEGPIEAIIEARNKGGYFKDLFDFCARLDLKKVNKRVIEK 881

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLE 941
            L+ +GALD  G  R  ++ SL +  K A       +    ++F    G  +D   ++  +
Sbjct: 882  LILSGALDRLGPHRAAMMASLKDAVKAASQHHHAESFGQSDMF----GVLTDAPEEVEHK 937

Query: 942  KFSVEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
               V      V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A 
Sbjct: 938  YTQVPKWPEKVWLEGERETLGLYLTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAG 997

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++G+RIG +T  + +   E   F
Sbjct: 998  LVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|52424629|ref|YP_087766.1| DNA polymerase III subunit alpha [Mannheimia succiniciproducens
            MBEL55E]
 gi|52306681|gb|AAU37181.1| DnaE protein [Mannheimia succiniciproducens MBEL55E]
          Length = 1159

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1051 (40%), Positives = 625/1051 (59%), Gaps = 51/1051 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+++G   +  ++     +   A+A+TD  N    ++F  +A  +GI+
Sbjct: 4    PRFVHLRVHSDFSMIDGIAKVKPLVKTCVQENMVAMALTDFTNFCGLVKFYGEALGSGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D+ ++ +L     G   F     + LL     GY+ +  L+S+ Y   +G + 
Sbjct: 64   PIMGA--DVSVKSDL----CGDEHF----ELTLLAKNNAGYKNITLLLSKAY--QRGYED 111

Query: 129  V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSSQVAEKRLLTFKKLFGDRLYVNL 186
            V  I   WL E   EG+I+L+GG  G + +      ++   E  +  ++K F D  Y++L
Sbjct: 112  VPYIDQDWLAEY-NEGIIVLSGGRKGDVGKKLLKTGAADEVESAVGFYQKYFPDHYYLSL 170

Query: 187  QR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             R  H   + Y ++  ++LA  H LP+VATN+ +FL  ED+EAH++ +A+     +    
Sbjct: 171  SRTGHNEEETYIKT-ALKLAEKHNLPVVATNDVVFLKSEDFEAHEIRVAIHDGFTLDDPK 229

Query: 245  RPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP++  D  Y ++  EM  +F+D+P ALENT+ IA+RC+  +++    LP+F   E    
Sbjct: 230  RPKLYSDRQYFRSEQEMCELFADIPSALENTLLIAQRCNVTIRLGEYFLPQFPTGEL--- 286

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                E+ L  +A  GLE RL         +      Y +RLD EL VI +M F GYFLIV
Sbjct: 287  --STEDYLIKRAKDGLEERLKVLFPDEKEREEKRPAYDERLDTELGVINQMGFPGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 345  MEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD+VI +V + YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP
Sbjct: 405  DFCMDNRDKVIEHVADMYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   ++ +A   + + ++   +D  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 465  PDPGMTLA-KAFDAEPQLQQIYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPTLIT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R  +     
Sbjct: 524  DFSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMDRDGKPH 583

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D++ IP DD E+++LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+
Sbjct: 584  IDINHIPLDDPESFNLLLKSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPL 643

Query: 656  DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            ++ +V N  +RK+G+E++        H  + P+L+ T GVI+YQEQVMQIAQ L+GY+L 
Sbjct: 644  ESGMVQNFIDRKHGREEVAYPDAQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLG 703

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  F  GA + GI   +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 704  GADLLRRAMGKKKPEEMAKQRSVFEKGAIEKGIDGELAMKIFDLVEKFAGYGFNKSHSAA 763

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+KTHYP EF+AA MT EMDN +KI     +  +  + + PP +NT    F
Sbjct: 764  YALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLTVTPPDINTGKHHF 823

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886
             V D+  I Y + AIKGVG      ++ A      F  L D C+RVD KK+NRR  ESL+
Sbjct: 824  SVNDHGEIVYGIGAIKGVGEGPIEALVSAREKGGIFKDLFDLCARVDLKKINRRTFESLI 883

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             +GA D  G  R  L ++L++  K +    K+      ++F    G  ++     + +  
Sbjct: 884  MSGAFDKLGPHRAALSKNLEDALKASDQHAKDEAAGQADMF----GVLTESPEEVEIAYA 939

Query: 947  NSSVRFE-----NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            N+    E      E+  LG Y S HP+  Y   L        ++ V  IRG     + +V
Sbjct: 940  NTPRWSEKQILDGERETLGLYLSSHPISRYLKELSHYSPNRLKDLVPNIRGQVSTASGLV 999

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V+ +   T+KG+R+G  T  + +   +   F
Sbjct: 1000 VASRFAVTKKGNRLGIATLDDRSGRLDITLF 1030


>gi|120602759|ref|YP_967159.1| subunit alpha [Desulfovibrio vulgaris DP4]
 gi|120562988|gb|ABM28732.1| DNA polymerase III, alpha subunit [Desulfovibrio vulgaris DP4]
          Length = 1175

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1052 (40%), Positives = 628/1052 (59%), Gaps = 37/1052 (3%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            L++  E    FVHL  H+ YSLL+GA+ L ++  +       A AITD  NLF A  F  
Sbjct: 5    LSRTEENMSDFVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYT 64

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
               + GI+PIIGC++ +   D    T++  +T +     +VLL    EGY  L+ LV+R 
Sbjct: 65   TCKSFGIKPIIGCEVYVAATDRTDKTSEFARTRY----HLVLLAQNNEGYHNLVRLVTRG 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +  +      R+    L+E  ++GLI L+   +G + R                +  +F 
Sbjct: 121  FT-EGFHYKPRVDKELLREY-SDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFP 178

Query: 180  DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             R Y+ LQ +   ++     ++++LA    LPLVATN+  +L   D EAHD+L+ +   T
Sbjct: 179  GRFYLELQSNGIKEQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQT 238

Query: 239  VVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V    R R  T + Y K+  EM   F+ +PEA+ NT  IA  C+  +       P +  
Sbjct: 239  TVDDPKRMRFETRELYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYEL 298

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E   +    + E +  A  GL+ RL +         + Y  RL++EL VI  M F GYF
Sbjct: 299  PEGMTL----DTEFQRLAEEGLKKRLEKHPDRDTIDHKAYWDRLEWELKVITDMGFPGYF 354

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK N IPVGPGRGS AGS+ A++L IT++DP+ + LLFERFLN +R+SMPD
Sbjct: 355  LIVQDFINWAKNNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPD 414

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DFC+ RR EVIRYV  KYG + V+QI TFG ++AKA +RDVGRAL M + + DR+ K
Sbjct: 415  IDVDFCERRRTEVIRYVAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAK 474

Query: 478  LIPNDPAHPV--SLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            LIP D    +  +L+A  D  + +R+    DP + +LL++S +LEGL RHASTHAAG+VI
Sbjct: 475  LIPEDLKMTIKKALEAEPDLATLYRD----DPQIRKLLDVSMRLEGLSRHASTHAAGVVI 530

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
             D+P+S+ +P+Y+  + +  VTQF+MK +EK GL+KFDFLGL+T+TL+Q +LD + ++G 
Sbjct: 531  SDKPMSEYLPLYKGKKGET-VTQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEITRQGK 589

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
               DL  +  DD ETY L +   T G+FQ+ESSGMRQ L  ++P C +DIIA+++LYRPG
Sbjct: 590  TPPDLDTLSLDDAETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPG 649

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+ + +V  +  RK+G+  +    P ++  L+ T GVI+YQEQVMQIAQ++  Y+L  AD
Sbjct: 650  PLGSGMVDEFIKRKHGEVPVTYPVPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKKI E M +++ +F+ GA KN I K  A  IF+L+ KFA+YGFNKSH+AAYA+
Sbjct: 710  LLRRAMGKKIAEAMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYAL 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISY TA++K H+PVEF+AA +T EM N +K+ K+    +  +I+++ P+V     +F V 
Sbjct: 770  ISYYTAFLKVHFPVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVH 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            + RI + L  IK VG    R I++A  +  P+ SL D C RV+ +K+ +RV+E+L+  GA
Sbjct: 830  EGRIVFGLGGIKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGA 889

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---------GTFSDKITLE 941
             DC G +R  +L SLD +   AQ   K R +   ++F   K         G   ++ T  
Sbjct: 890  CDCLGCTRAGMLASLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAP 949

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            ++  ++  +RFE E   LGF+ + HPL  Y+  L ++ +   EE+     G  IR A +V
Sbjct: 950  EWP-DDQKLRFEKE--ALGFFLTSHPLQPYRKELFRLRLTPLEEARDMPPGAEIRTAVLV 1006

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + ++  T+KG R+ +    +     E  FFP
Sbjct: 1007 TTLKELMTKKGQRMAFAGVEDLTASAEVVFFP 1038


>gi|302134069|ref|ZP_07260059.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato
            NCPPB 1108]
          Length = 1173

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1067 (39%), Positives = 622/1067 (58%), Gaps = 69/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  + +   PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLAVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +R  D       V LA  H  PLVATN+  F+++ D+EAH+  + +     +    R   
Sbjct: 173  NRANDEEHLHAAVALAERHGAPLVATNDVRFINQADFEAHETRVCIGEGRALDDPRRSHN 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FSDLPEALEN+VEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENSVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA        + Y    Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA  RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVGRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVDEAPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             +V  + NRK+G+ ++   +P +D       P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 648  GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V D+ RI Y L AIKGVG      I +A    PF  L DFC+RVD K++N+R L+ L+ 
Sbjct: 826  TVSDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDGLIR 885

Query: 888  AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929
            +GALD  G                +R  LL +L+   + A+   ++  + H ++F     
Sbjct: 886  SGALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGGLFV 945

Query: 930  --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              +   +++     + S+++   R   E+  LG Y +GHP+D Y+  +R+       + +
Sbjct: 946  EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998

Query: 988  ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++   +   +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 999  IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|157372010|ref|YP_001479999.1| DNA polymerase III subunit alpha [Serratia proteamaculans 568]
 gi|157323774|gb|ABV42871.1| DNA polymerase III, alpha subunit [Serratia proteamaculans 568]
          Length = 1162

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1051 (41%), Positives = 617/1051 (58%), Gaps = 48/1051 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L +  EGYQ L  L+SR Y    G   
Sbjct: 64   PIIGADFHV----------QSEVLGDELAQLTVLAANNEGYQNLTLLISRAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+G   G + +     +    E+ L  +++ F D  Y+ L R
Sbjct: 114  PIIDRDWLIE-HREGLILLSGARQGDVGKFLLRGNQPQVEQCLEFYQQYFPDSYYLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEENYLHAAVALATERGLPVVATNDVRFLVADDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T   Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++    LP+F      D+  E
Sbjct: 233  NYTSQQYMRDEDEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQF---PTGDMTTE 289

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363
            +   L++K   GLE RL          AQ   +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 290  DFLVLKSKE--GLEDRLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDLVIDHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     +D+
Sbjct: 527  PLYCDAEGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINARRAKTGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   GI   ++V IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKNPVEMAKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSKKLNRRVLESLVF 887
            D   I Y + AIKGVG      I+EA        F  L D C+R D KKLNRR+LE L+ 
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAILEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIM 886

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            +GA D  G  R  L+ SL +  K A    K       ++F    G  ++     + S  N
Sbjct: 887  SGAFDRLGPHRAALMNSLPDALKAADQHAKAEAIGQVDMF----GVLAEAPEQVEQSYAN 942

Query: 948  -----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                   V  + E+  LG Y +GHP+  Y K I R  G +  ++   T RG       +V
Sbjct: 943  VPLWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLV 1002

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++ +   T++G+RIG  T  + +   E   F
Sbjct: 1003 IASRVMVTKRGNRIGICTLDDRSGRLEVMLF 1033


>gi|284008505|emb|CBA75016.1| DNA polymerase III subunit alpha [Arsenophonus nasoniae]
          Length = 1160

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1051 (41%), Positives = 629/1051 (59%), Gaps = 50/1051 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G   +N +++++A    PA+AITD  NL+  ++F   A A GI+
Sbjct: 4    PRFIHLRVHSDYSIIDGLAKINPLVNRVAELGMPALAITDFTNLYGLIKFYGAAHAEGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  ++  L            V  + +L    +GY  L  L+S  Y    G   
Sbjct: 64   PIIGA--DFYLESELLGDE--------VAHLTILARDNKGYHNLTLLISAAYQKGYGAIG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL     EGL++L+GG  G + +     + Q+ E+ L  ++  F +  Y+ L R
Sbjct: 114  PTIKREWLV-THKEGLLLLSGGCLGDVGKFLLRGNQQLVEQCLDFYQTHFPNNYYLELVR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       VQLA    +P+VATNN  F++ +D+ AH++ +A+     ++ + RP+
Sbjct: 173  TGRPDEESYLHAAVQLAAEKGVPVVATNNVRFINSDDFAAHEIRVAIHDGFTLADQKRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL++  EMV +F+D+PEALEN+VEIA+RC+ ++++    LP+F   +       
Sbjct: 233  NYSPQQYLRSEQEMVELFADIPEALENSVEIAKRCNVMMRLGEYFLPQFPTGDM-----A 287

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L   A AGLE RL      +   A+   +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLIKCAKAGLEERLQFLYPNEKERAERRIEYDERLDTELRVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P+DP
Sbjct: 408  MEKRDQVIEHVAQMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLVPSDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + + +E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFVVEPQLQEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     P+TQF+   +E AGL+KFDFLGL+TLT++  +LD + QR  K     +D+
Sbjct: 527  PLYCDPEGQNPLTQFDKNDVEYAGLVKFDFLGLRTLTIISWALDMINQRRAKQNLAPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP  D + + LL    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  ATIPLTDQKCFDLLQRAETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDVEWQHASLQTVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM +Q+  F +GA KNGI   + + IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAQQRSIFEAGAVKNGIDGELGMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V 
Sbjct: 767  VSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVSLVDECWRMGLKVLPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I+E+      F  + D C+RVD+KKLNRRV+E L+ +G
Sbjct: 827  DRGEIVYGIGAIKGVGEGPIEAIIESRQKGGYFKEIFDLCARVDTKKLNRRVMEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A D  G  R  L+ SL++  K A    K       ++F    G  ++    E+     +S
Sbjct: 887  AFDHLGPHRAALMSSLEDALKAADQHAKAEAIGQTDMF----GVLAE--APEQVEQSYAS 940

Query: 950  VR-------FENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            V         E E+  LG Y +GHP+  Y   I R       ++   T RG    +  + 
Sbjct: 941  VAKWPEHLILEGERETLGLYLTGHPITAYLSEIERYTSGLRLKDVNPTPRGQMSTVVGLA 1000

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++ +   T++G+RIG  T  + +   +   F
Sbjct: 1001 LTAKVVTTKRGNRIGICTLDDRSGRLDIMLF 1031


>gi|149377463|ref|ZP_01895205.1| DNA polymerase III subunit alpha [Marinobacter algicola DG893]
 gi|149358230|gb|EDM46710.1| DNA polymerase III subunit alpha [Marinobacter algicola DG893]
          Length = 1160

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1054 (40%), Positives = 626/1054 (59%), Gaps = 53/1054 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S +FVHL+VHS YS+++G + +  ++ ++A    PA+ +T+ +N+ S + F + A  AG+
Sbjct: 2    SQTFVHLRVHSEYSMVDGLVRVKPLIGRVAELGMPAVGLTEQSNMCSLVRFYKAAMGAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG  L ++  D      +   PF     I LL    +GY  L E+VS  Y   Q   
Sbjct: 62   KPIIGADLWVENPD------EPDNPF----RITLLARNNDGYLNLTEVVSLGYTEGQRFG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL E  TEGLI L+G   G + +A       +A +R   +  L+    Y+ LQ
Sbjct: 112  KPIIQRQWL-ENRTEGLIALSGARLGDVGKALMSGKLDLARQRAEYWMSLYPGSFYLELQ 170

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R  D       V+LA     P+VATN+  FL  ED+EAH+  + +  S  +    R 
Sbjct: 171  RTGRPGDEDCLHLNVELAEALGCPVVATNDVHFLHAEDFEAHEARVCIGESRTLDDPRRD 230

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R   D  YL++  EM+ +FSD+PEA+ENTVEIARRCS  +++    LP +     D +  
Sbjct: 231  RRFSDQQYLRSADEMIELFSDIPEAVENTVEIARRCSVPVRMGEYFLPNY--PIPDGMTM 288

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVIARMKFSGYFLIV 360
            +E    R  +  GLE RLA+  ++K     D     Y +RL+FEL++I +M F GYFLIV
Sbjct: 289  DEY--FRKVSEEGLEERLAK-TLSKDDPEYDSKREAYYKRLNFELDIIIQMGFPGYFLIV 345

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI+WAK N +PVGPGRGSGAGS+ AYA  ITD+DPL + LLFERFLNP+R+SMPDFD+
Sbjct: 346  MDFIKWAKNNGVPVGPGRGSGAGSLVAYAQLITDLDPLEYDLLFERFLNPERVSMPDFDV 405

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RD VI YV  KYG E V+QIITFG++ AKA +RDV R     Y   D+L K+IP
Sbjct: 406  DFCMEGRDRVIAYVAEKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIP 465

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +P   +  +A+  + +  E    D     + E++ KLEG+ R+A  HA G+VI    ++
Sbjct: 466  FEPGMTLE-KALEQEPQLVEFLENDEEAQEIWEMALKLEGVCRNAGKHAGGVVIAPTKIT 524

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     
Sbjct: 525  DFSPLYCDDEGGSLVTQFDKGDVEDAGLVKFDFLGLRTLTIIDWALKMINPRLEKQGKPA 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D++ IP DD  ++ +L    T  +FQLES GM+  +  +QPD +ED+IALV+L+RPGP+
Sbjct: 585  LDINEIPLDDVPSFDMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPGPL 644

Query: 656  DNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V  + +RK+G++ +   HP      + P+L+ T GVI+YQEQVMQIAQ+++GYSL 
Sbjct: 645  QSGMVDDFIDRKHGRQPMSFPHPDYQYEGLKPVLEPTYGVILYQEQVMQIAQVMAGYSLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQK+ F+ G   N I+KT+A NIF+L+ KFA YGFNKSH+AA
Sbjct: 705  NADMLRRAMGKKKPEEMAKQKQFFLDGCENNDINKTLAENIFDLVEKFAGYGFNKSHSAA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K HYP EF+AA +T +M N +K+    ++ R   ++++ P V+     F
Sbjct: 765  YALVSYQTLWLKAHYPAEFMAAVLTADMQNTDKVVTLVEECRSMGLELLVPDVSRSEYTF 824

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V D+  I Y L AIKG+G      I    AD +P+  + DFC RVD KK+N+R +E+L+
Sbjct: 825  TVNDDGAIVYGLGAIKGLGEGPIGSIQAGRADGEPYQDIFDFCRRVDLKKVNKRAMEALI 884

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITL 940
             +GA+D  G  R QL+ S+D   + A    +N T    ++F        +   +SD   +
Sbjct: 885  RSGAMDKLGAGRAQLMASIDKAIQQAGQQSRNETVGMTDMFGDMLMGGEDGDPYSDVANV 944

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLA 998
             ++  +    R + E+  LG Y +GHP D Y+  +R+        S+A ++      R+A
Sbjct: 945  REWPKKE---RLKGEKDTLGLYLTGHPFDEYEKEVRRF----VRSSIADLKPARQPQRVA 997

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +VV+++  KTR GS + ++T  + +   EA  F
Sbjct: 998  GLVVAQRSMKTRTGSTMAFITLDDRSARIEATLF 1031


>gi|46579764|ref|YP_010572.1| DNA polymerase III subunit alpha [Desulfovibrio vulgaris str.
            Hildenborough]
 gi|46449179|gb|AAS95831.1| DNA polymerase III, alpha subunit [Desulfovibrio vulgaris str.
            Hildenborough]
 gi|311233555|gb|ADP86409.1| DNA polymerase III, alpha subunit [Desulfovibrio vulgaris RCH1]
          Length = 1164

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1042 (40%), Positives = 624/1042 (59%), Gaps = 37/1042 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YSLL+GA+ L ++  +       A AITD  NLF A  F     + GI+PI
Sbjct: 4    FVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSFGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IGC++ +   D    T++  +T +     +VLL    EGY  L+ LV+R +  +      
Sbjct: 64   IGCEVYVAATDRTDKTSEFARTRY----HLVLLAQNNEGYHNLVRLVTRGFT-EGFHYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L+E  ++GLI L+   +G + R                +  +F  R Y+ LQ +
Sbjct: 119  RVDKELLREY-SDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLELQSN 177

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     ++++LA    LPLVATN+  +L   D EAHD+L+ +   T V    R R 
Sbjct: 178  GIKEQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPKRMRF 237

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + Y K+  EM   F+ +PEA+ NT  IA  C+  +       P +   E   +    
Sbjct: 238  ETRELYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEGMTL---- 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + E +  A  GL+ RL +         + Y  RL++EL VI  M F GYFLIV DFI WA
Sbjct: 294  DTEFQRLAEEGLKKRLEKHPDRDTIDHKAYWDRLEWELKVITDMGFPGYFLIVQDFINWA 353

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N IPVGPGRGS AGS+ A++L IT++DP+ + LLFERFLN +R+SMPD D+DFC+ RR
Sbjct: 354  KNNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFCERRR 413

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVIRYV  KYG + V+QI TFG ++AKA +RDVGRAL M + + DR+ KLIP D    +
Sbjct: 414  TEVIRYVAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIPEDLKMTI 473

Query: 488  --SLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +L+A  D  + +R+    DP + +LL++S +LEGL RHASTHAAG+VI D+P+S+ +P
Sbjct: 474  KKALEAEPDLATLYRD----DPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYLP 529

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +Y+  + +  VTQF+MK +EK GL+KFDFLGL+T+TL+Q +LD + ++G    DL  +  
Sbjct: 530  LYKGKKGET-VTQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEITRQGKTPPDLDTLSL 588

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD ETY L +   T G+FQ+ESSGMRQ L  ++P C +DIIA+++LYRPGP+ + +V  +
Sbjct: 589  DDAETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMVDEF 648

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK+G+  +    P ++  L+ T GVI+YQEQVMQIAQ++  Y+L  AD+LRRAMGKKI
Sbjct: 649  IKRKHGEVPVTYPVPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAMGKKI 708

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E M +++ +F+ GA KN I K  A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K 
Sbjct: 709  AEAMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAFLKV 768

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            H+PVEF+AA +T EM N +K+ K+    +  +I+++ P+V     +F V + RI + L  
Sbjct: 769  HFPVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVHEGRIVFGLGG 828

Query: 842  IKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK VG    R I++A  +  P+ SL D C RV+ +K+ +RV+E+L+  GA DC G +R  
Sbjct: 829  IKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCLGCTRAG 888

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---------GTFSDKITLEKFSVENSSVR 951
            +L SLD +   AQ   K R +   ++F   K         G   ++ T  ++  ++  +R
Sbjct: 889  MLASLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAPEWP-DDQKLR 947

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
            FE E   LGF+ + HPL  Y+  L ++ +   EE+     G  IR A +V + ++  T+K
Sbjct: 948  FEKE--ALGFFLTSHPLQPYRKELFRLRLTPLEEARDMPPGAEIRTAVLVTTLKELMTKK 1005

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G R+ +    +     E  FFP
Sbjct: 1006 GQRMAFAGVEDLTASAEVVFFP 1027


>gi|261496138|ref|ZP_05992546.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            serotype A2 str. OVINE]
 gi|261308240|gb|EEY09535.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            serotype A2 str. OVINE]
          Length = 1158

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1047 (40%), Positives = 616/1047 (58%), Gaps = 48/1047 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS +S++ G   + +++    A+   A+ +TD  N    ++F  +A  AGI+PI
Sbjct: 6    FVHLKVHSDFSMINGLAKVKSLVKTAVANNMVAMGLTDFTNFCGLVKFYGEALGAGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK-QSV 129
            IG  + +        T  G   +     + LL    +GY  + +++S+ Y   QG  +  
Sbjct: 66   IGADVYV-------RTEAGSEDYF---ELTLLAKNNKGYHNITQILSKAY--QQGYIEFP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +   WL E+  EG+I+L+GG  G + +A    + Q AE+++  +++ + +  Y+++ R 
Sbjct: 114  MVEREWLAEL-NEGIIILSGGRMGDVGKALLKENRQEAEEKVAFYQQYYPNHFYLSVCRT 172

Query: 190  RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
               D  R   Q V+ +  + +PLVA N+ +FL E+D++AH++ +A+  S  +    RP+ 
Sbjct: 173  GRADEERYIKQAVEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKK 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +P  Y +   EM  +F+DLP AL NTVEIA+RCS  +++    LP F   E        
Sbjct: 233  YSPKQYFRTEEEMCKLFADLPSALANTVEIAKRCSVTVRLGEYFLPNFPTGELST----- 287

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLIV +FI
Sbjct: 288  EDFLVKKSKEGLEERLEFLFPDPEERANKRSVYDERLQVELDVINQMGFPGYFLIVMEFI 347

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            QW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC 
Sbjct: 348  QWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 407

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLIP DP 
Sbjct: 408  DGRDRVIEHVAETYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPG 467

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P
Sbjct: 468  MTLE-KAFAAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSP 526

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLS 599
            +Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + +R  +     + + 
Sbjct: 527  LYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINERLAREGKEPIRIE 586

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I  DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+++ +
Sbjct: 587  TISLDDKKSFALLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGM 646

Query: 660  VYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            V N  +RK+GKE++        H  + P+L+ T GVI+YQEQVMQIAQ L+GY+L  AD+
Sbjct: 647  VQNFIDRKHGKEEVSYPDPQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADL 706

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  EEM  Q+E F  GA   GI   +A  IF+L+ KFA YGFNKSH+AAYA++
Sbjct: 707  LRRAMGKKKPEEMAAQREVFEKGAEAKGIDGKLAGQIFDLVEKFAGYGFNKSHSAAYALV 766

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+    F V +
Sbjct: 767  SYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECMNMGLTVVPPDVNSGKHRFSVNE 826

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I Y L AIKGVG      I+ A   +  F  L D  +RVD KK+NRR  ESL+ +GA
Sbjct: 827  KGEIVYGLGAIKGVGEGPIEAILAARQKEGKFKDLFDLTARVDLKKINRRTFESLIMSGA 886

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS-- 948
             D  G  R  L+++L++  K +    K       ++F    G  ++     + +  N+  
Sbjct: 887  FDKLGPHRAALMKNLEDALKASDQHAKMEELGQSDMF----GVLTETPEEVQNAYANTPK 942

Query: 949  ---SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                V  + E+  LG Y SGHP+  +   L         E   T RG    ++ +V++ +
Sbjct: 943  WSEQVILDGERATLGLYLSGHPIGRFLKELSHYAPNRLNELQPTFRGQMTTVSGIVMASR 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++GSRIG  T  + + + +   F
Sbjct: 1003 VAVTKRGSRIGIATIEDRSGKLDITLF 1029


>gi|257464972|ref|ZP_05629343.1| DNA polymerase III subunit alpha [Actinobacillus minor 202]
 gi|257450632|gb|EEV24675.1| DNA polymerase III subunit alpha [Actinobacillus minor 202]
          Length = 1157

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1050 (40%), Positives = 623/1050 (59%), Gaps = 48/1050 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SP FVHL+VHS +S++ G   + +++   AAD   A+A+TD  N    ++F  ++ A+GI
Sbjct: 2    SPRFVHLKVHSDFSMINGLAKVKSLVKAAAADNMVAMALTDFTNFCGLVKFYGESLASGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG  + +          + ++    V  + LL    +GY  +  L+S  Y   QG  
Sbjct: 62   KPIIGADILV----------RSESESEEVYELTLLAKNNQGYHNITLLLSMAY--QQGYV 109

Query: 128  SVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             + +   +WL E   EG+I+L+GG SG + +A    + + AE     +++ F +  Y ++
Sbjct: 110  DLPLVEKAWLAEY-NEGIIVLSGGRSGDVGKALLKENVKEAENLTAFYQQYFPNHFYFSV 168

Query: 187  QRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R  S +V  A    +P+VA N+ +FL E+D++AH++ +A+  S  +    R
Sbjct: 169  CRTGRADEERYISAIVPFANQKGIPIVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKR 228

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +P  Y ++  EM  +F+DLP ALENT+EIA+RCS  +++    LP F      D+ 
Sbjct: 229  PKKYSPQQYFRSEEEMCRLFADLPSALENTIEIAKRCSVTVRLGEYFLPNF---PTGDLT 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             EE   L  K+  GLE RLA        +    + Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  TEEF--LIKKSEEGLEERLAFLFPDPEERASKREVYDKRLQVELDVINQMGFPGYFLIVM 343

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 344  EFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 403

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLIP 
Sbjct: 404  FCMDGRDRVIDHVAETYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPP 463

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A A + +  E   +D  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 464  DPGMTLE-KAFAAEPKLPELYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 522

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKV 596
              P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ +     A+    V
Sbjct: 523  FSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINARLTAEGKEPV 582

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP +D +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP++
Sbjct: 583  RIESIPLNDKKSFDLLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLE 642

Query: 657  NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+GKE++        H  + P+L+ T GVI+YQEQVMQIAQ L+GY+L  
Sbjct: 643  SGMVQNFIDRKHGKEEVSYPDAQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGG 702

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM  Q+E F  GA +  I   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 703  ADLLRRAMGKKKPEEMAAQREIFEKGAIEKNIDGELAMKIFDLVEKFAGYGFNKSHSAAY 762

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA M+ EMDN +KI     +     + ++PP +N+    F 
Sbjct: 763  ALVSYQTLWLKAHYPAEFMAAVMSSEMDNTDKIVGLYDECINMGLTVVPPDINSGKHHFS 822

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V +   I Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR  ++L+ 
Sbjct: 823  VNEKGEIVYGLGAIKGVGEGPIDAILEARQKDGIFKDLFDLTARVDLKKINRRTFDALIM 882

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            +G+LD  G  R  L+++L++  K +    K       ++F    G  ++     + +  N
Sbjct: 883  SGSLDKLGPHRAALMKNLEDALKASDQHTKMEALGQSDMF----GVLTETPEEVQNAYAN 938

Query: 948  S-----SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            +      V  + E+  LG Y SGHP+  +   L         E   T RG  + +A +V+
Sbjct: 939  TPKWSEQVVLDGERATLGLYLSGHPIGRFLKELAHYAPVRLNELQPTYRGQMVTVAGIVM 998

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            S +   T++GSRIG  T  + + + +   F
Sbjct: 999  SYRVAVTKRGSRIGIATIEDRSGKLDITLF 1028


>gi|163750366|ref|ZP_02157606.1| DNA polymerase III subunit alpha [Shewanella benthica KT99]
 gi|161329856|gb|EDQ00842.1| DNA polymerase III subunit alpha [Shewanella benthica KT99]
          Length = 1157

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1053 (41%), Positives = 613/1053 (58%), Gaps = 56/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PSFVHL+VHS +S+ +G   +  IL K+     PA+A+TD  NL   ++F     +AG++
Sbjct: 4    PSFVHLRVHSDFSMSDGLAKVKPILAKVTELGMPAVALTDQTNLCGLVKFYGACHSAGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-------SIVLLVSTAEGYQRLIELVSRMYL 121
            PIIG   D  MQ               VP       +I +L  T EGY  L  L+S  YL
Sbjct: 64   PIIGA--DFWMQ---------------VPGFDKEFCAITVLAMTNEGYSNLTLLISDAYL 106

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSSQVAEKRLLTFKKL-FG 179
                K    I   WL +  ++GL++L+GG  G + RA    N  QVA   L+ F +  F 
Sbjct: 107  RGHIKDKAVIDQGWLAKY-SKGLLLLSGGRQGDVGRALLNGNHGQVAS--LIEFYRTHFP 163

Query: 180  DRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            DR Y+ L R  R  +       V LA   +LP+VATN  +F   E +EAH++ +A++   
Sbjct: 164  DRYYLELLRTGRPDEETYLHLAVALAQEKDLPVVATNQVVFNGPEFFEAHEIRVAISDGF 223

Query: 239  VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             ++   RP+  +   Y K   EM  +F D+PEA+ NTVEIA+RC+  +++    LP F  
Sbjct: 224  TLADPRRPKKYSEQQYFKTSEEMCELFQDIPEAIANTVEIAKRCNVTVRLGEYFLPNFPT 283

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFS 354
             +        E+ L   +  GLE RL          AQ    Y +RLD EL VI +M F 
Sbjct: 284  GDL-----SIEDFLVKVSKDGLEDRLEFLFPDPEVRAQKRPRYDERLDIELKVINQMGFP 338

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV +FIQW K  NIP+GPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+S
Sbjct: 339  GYFLIVMEFIQWGKDQNIPIGPGRGSGAGSLVAYSLNITDLDPLEYDLLFERFLNPERVS 398

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFDIDFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR
Sbjct: 399  MPDFDIDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDR 458

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            + K++P +P   ++ +A   +   +E+   D  V  L+++ + LEG+ R+A  HA G+VI
Sbjct: 459  ISKMVPAEPGMTLA-KAFEVEPALQESYDGDEEVKDLIDMCRILEGVTRNAGKHAGGVVI 517

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
                ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +  
Sbjct: 518  SPTKITDFAPIYCDSEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKRK 577

Query: 595  K-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            +     V +  IP DD + + LL    T  +FQLES GM+  ++ +QPD  ED+IALV+L
Sbjct: 578  ELGKEPVRIESIPLDDKKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDSFEDMIALVAL 637

Query: 650  YRPGPIDNIVVYN--NRKNGKEKIVSI------HPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +RPGP+ + +V N   RK+G+E +VS       H  +  +L+ T G+I+YQEQVMQIAQ+
Sbjct: 638  FRPGPLQSGMVDNFIERKHGRE-VVSFPDAEYQHESLRWVLEPTYGIILYQEQVMQIAQV 696

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            L+GYSL  AD+LRRAMGKK  EEM KQ+  F  GA  NGI   +++ IF+L+ KFA YGF
Sbjct: 697  LAGYSLGGADMLRRAMGKKKPEEMAKQRGTFKEGAINNGIDGELSMKIFDLVEKFAGYGF 756

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NKSH+AAYA++SYQT W+KTHYP EF+AA M+ +MDN +KI     +  +    ++PP V
Sbjct: 757  NKSHSAAYALVSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVILVDECERMGQPLLPPDV 816

Query: 822  NTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
            N   + F V  + +I Y + AIKGVG      I+ A  + PF  L DFC+RVD KKLN+R
Sbjct: 817  NKGLLKFTVDEEGKIVYGIGAIKGVGDGPVESILAARKNGPFKDLFDFCARVDLKKLNKR 876

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KIT 939
            ++E L+FAGALD  G  R  ++ +L    + A    K       ++F        D K  
Sbjct: 877  IMEKLIFAGALDSLGPHRAAMMATLPEAVRAADQNAKAEAIGQHDMFGLLNSDVEDIKQQ 936

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
              + +     V  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A 
Sbjct: 937  FVQCTPWPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAG 996

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++GS++G VT  + +   E   F
Sbjct: 997  LVIATRVMLTKRGSKMGLVTLDDKSARLEVMLF 1029


>gi|293390623|ref|ZP_06634957.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans D7S-1]
 gi|290951157|gb|EFE01276.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans D7S-1]
          Length = 1158

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1053 (40%), Positives = 622/1053 (59%), Gaps = 56/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHLQVHS +S+++G   +  ++     +   A+ +TD  N    + F  +A ++G++
Sbjct: 4    PRFVHLQVHSDFSMIDGIAKVKPLVKACVGNGMVAVGLTDFTNFCGLVRFYGEALSSGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D+ +Q  L     G   F     + LL    EGY+ +  L+S+ Y  ++G   
Sbjct: 64   PIIGT--DVLVQSAL----CGDEKF----RLTLLAKNNEGYKNITLLLSKAY--ERGYAD 111

Query: 129  V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            +  I   WL E    G+I+L+GG +G + +    ++    +  +  +++ F D  Y+ L 
Sbjct: 112  LPYIDQQWLVE-HRAGVIVLSGGVNGDVGKKLLRSNPDELKSAVDFYREFFPDHFYLTLT 170

Query: 188  RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R    D  R  +V ++LA   +LP+VATN+  FL  ED+EAH++ +A+     +    RP
Sbjct: 171  RTGRPDEERYIKVALELAEQQQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKRP 230

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            ++ T   Y ++  EM  +F+D+P ALENTV IA+RC+  +++    LP+F   +      
Sbjct: 231  KLYTSQQYFRSEQEMCDLFADVPSALENTVLIAQRCNVTIRLGEYFLPQFPTGDL----- 285

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+ L  +A  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +
Sbjct: 286  STEDYLVKRAKDGLEERLKVMFPDEKVRTERRPEYDERLQVELDVINQMGFPGYFLIVME 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 346  FIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI +V   YGH  V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P D
Sbjct: 406  CMDGRDRVIDHVAEMYGHGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPPD 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   ++ +A   + + +E   AD  V  ++++++KLEG+ R+A  HA G+VI    ++  
Sbjct: 466  PGMTLA-KAFEAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
             P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R  K     VD
Sbjct: 525  SPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKPLVD 584

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD +++ +L    T  +FQLES GM+  ++ ++PDC EDIIALV+L+RPGP+ +
Sbjct: 585  INAIPLDDQQSFDVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQS 644

Query: 658  IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  A
Sbjct: 645  GMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 705  DLLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGGLAMKIFDLVEKFAGYGFNKSHSAAYA 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+K HYP EF+AA MT EMDN +KI     +  +  ++++PP +NT    F V
Sbjct: 765  LVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECMRMGLKVVPPDINTGKHHFSV 824

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             +N  I Y + AIKGVG      ++EA   D  F +L D C+RVD KK+NRR  ESL+ +
Sbjct: 825  NENGEIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIKS 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D  G  R  L Q+L++  + +    K+      ++F          +T     VENS
Sbjct: 885  GAFDKLGPHRAALQQNLEDALRASDQHAKDEALGQVDMFG--------VLTETNEEVENS 936

Query: 949  SVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
                         + E+  LG Y S HP+  Y   L        +E V   RG     + 
Sbjct: 937  YANIAPWTEKTILDGERETLGLYLSSHPVTRYLKELAHYSPVRLKELVPNYRGQMSTASG 996

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V+S +   T+KG+ IG  T  + +   +   F
Sbjct: 997  LVMSTRVAVTKKGNHIGIATIDDRSGRLDLTLF 1029


>gi|219871559|ref|YP_002475934.1| DNA polymerase III subunit alpha [Haemophilus parasuis SH0165]
 gi|219691763|gb|ACL32986.1| DNA polymerase III subunit alpha [Haemophilus parasuis SH0165]
          Length = 1158

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1056 (40%), Positives = 614/1056 (58%), Gaps = 62/1056 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S++ G   +  ++    A+   A+A+TD  N    + F  +A  +G++
Sbjct: 4    PRFVHLKVHSDFSMINGLAKVKPLIKACVANNMVAMALTDFTNFCGLVRFYGEALGSGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPT---VPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PI+G  + +              P P    +  + LL     GY  +  L+S+ Y   QG
Sbjct: 64   PIVGADVMV-------------RPEPESEELYELTLLAKNNTGYHNITLLLSKAY--QQG 108

Query: 126  KQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 +   +WL E   EG+I+L+GGS+G + +A    + Q AE+ L  +++ F +  Y+
Sbjct: 109  YVEFPVVEKAWLAE-HNEGVILLSGGSNGDVGKALLKENQQEAEQLLAFYQRYFHNHYYL 167

Query: 185  NLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +L R    D  R   Q V  +    +PLVA N+ +FL + D+EAH++ +A+  S  +   
Sbjct: 168  SLCRTGRSDEERYIQQAVTFSQKFAIPLVAVNDVMFLKQNDFEAHEIRVAIHDSFTLDDP 227

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP + +   Y ++  EM  +F+DLP+A+ENT+ IA+RC+  +++    LP F   +   
Sbjct: 228  KRPQKYSEQQYFRSEDEMCQLFADLPQAIENTLFIAQRCNVTIRLGEYFLPNFPTGDLS- 286

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  KA  GLE RLA        +      Y +RL  EL+VI +M F GYFLI
Sbjct: 287  ----TEDFLVKKAKEGLEERLAFLFPDPDVRASKRSVYDERLQVELDVINQMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 343  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLI
Sbjct: 403  VDFCMDGRDRVIEHVSETYGCQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLI 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   ++ +A   + +  E    D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 463  PPDPGMTLA-KAFEAEPKLPELYDTDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTAI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---- 595
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR  K    
Sbjct: 522  TDFSPLYCDSYGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLEKEGKP 581

Query: 596  -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD +T+ LL    T  +FQLES GM+  +  +QP   EDIIALV+L+RPGP
Sbjct: 582  PVRIESIPLDDEKTFKLLKAAKTTAVFQLESRGMKDLISRLQPSNFEDIIALVALFRPGP 641

Query: 655  IDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +++ +V N  +RK+GKE I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 642  LESGMVQNFIDRKHGKEPIAYPDAQYQHESLQPILEPTYGIIVYQEQVMQIAQVLAGYTL 701

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM  Q+  F  GA K GI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 702  GGADLLRRAMGKKKPEEMAAQRATFEEGAKKQGIDGELAMKIFDLVEKFAGYGFNKSHSA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT EMDN +KI  F  +     + ++PP +N+    
Sbjct: 762  AYALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDINSGKHR 821

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y L AIKGVG      ++EA + D  F  L D  +RVD +K+NRR  E L
Sbjct: 822  FSVNEKGEIVYGLGAIKGVGEGPIDAMLEARNKDGIFKDLFDLTARVDLRKVNRRTFEGL 881

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + AGA D  G  R  L+++L++  +         +++H  + A  +      +T     V
Sbjct: 882  IMAGAFDKLGPHRAALMKNLEDALR--------ASDQHNKMEALGQSDMFGVLTETPEEV 933

Query: 946  ENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            +N+             +NE+  LG Y SGHP+  +   L         E   T RG    
Sbjct: 934  QNAYANTPKWTEQTILDNEKATLGLYLSGHPVGRFLKELAHYAPNKLNEVQPTYRGQTTT 993

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +A +++  +   T+KGSRIG  T  + + + +   F
Sbjct: 994  VAGLIMGARIATTKKGSRIGIATIEDRSGKMDLTLF 1029


>gi|90580986|ref|ZP_01236787.1| DNA polymerase III subunit alpha [Vibrio angustum S14]
 gi|90437864|gb|EAS63054.1| DNA polymerase III subunit alpha [Vibrio angustum S14]
          Length = 1159

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1056 (39%), Positives = 626/1056 (59%), Gaps = 61/1056 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G   +  I+ K +    PA+A+TD  NL   ++F   A  AGI+
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKVKPIVKKASELSMPALAMTDFTNLCGLVKFYFAAHDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +      +    G   F     + +L +  EGY+ L  L+S  Y     +  
Sbjct: 64   PIIGADFKV------QSAEMGDELF----ELTILAANNEGYKNLTLLISEAYQRGHVQHL 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL     EGLI+L+GG +G + +A    + ++ +  +  ++  F D  Y+ L R
Sbjct: 114  PVIDKEWLVN-HREGLIILSGGKNGDVGKALLKGNQKMVDGLVAFYQTHFPDSYYLELVR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA   +LP+VATN+   L+ + ++AH++ +A+     +   +RP+
Sbjct: 173  TGRADEEAYLHFAVELAEKADLPVVATNDVRLLTADQFDAHEIRVAIHDGYTLVDPNRPK 232

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + +   YL++  EM  +F+D+PEAL+N+VEIA+RC+  +++    LP F   +       
Sbjct: 233  LYSAQQYLRSEEEMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  IEDFLIAKSKEGLEERLEFLFPDPEVRAARRPEYDERLDIELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFDIDFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDIDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P +P
Sbjct: 408  MDKRDLVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPAEP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  +A  AD  V  L+++ + LEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFDAEPQLGQAYDADEEVRDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R ++     V++
Sbjct: 527  PLYCDAEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRLIEQGKEPVNI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    +  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPMDDPKSFAMLQRSESTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +V N  +RK+G+E +          S+  ++DP    T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 647  MVDNFIDRKHGREAVSYPDEKWQHESLKEILDP----TYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  G+ KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAVFEEGSIKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +KI     +  +  ++++PP VN     
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKIISLVDECHRMKLKLLPPDVNKGLYR 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  + Y + A+KGVG     +I+ A      F  L DFC+R+D+KK+N+RVLE L
Sbjct: 823  FNVDEDGAVVYGIGAVKGVGEGPIENIISAREKGGHFKDLFDFCARIDTKKVNKRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + +GA+D  G +R  +L +LD+  K A        ++H    A  +      +T     V
Sbjct: 883  IKSGAMDRLGPNRAAMLATLDDAIKAA--------SQHHQAEAFGQADMFGVLTAAPEEV 934

Query: 946  EN---------SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            EN           V  E E+  LG Y +GHP++ Y   L+       +++  T R     
Sbjct: 935  ENKYANIPEAPDKVWLEGERETLGLYLTGHPINAYLSELKHYTTWRLKDAQQTGRDKVAT 994

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +A +V++ +   T++G+RIG +T  + +   E   F
Sbjct: 995  VAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|217967773|ref|YP_002353279.1| DNA polymerase III, alpha subunit [Dictyoglomus turgidum DSM 6724]
 gi|217336872|gb|ACK42665.1| DNA polymerase III, alpha subunit [Dictyoglomus turgidum DSM 6724]
          Length = 1127

 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1028 (39%), Positives = 642/1028 (62%), Gaps = 31/1028 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+GA  ++ ++D+  A   PA+AITD   ++  ++F +KA   GI+P
Sbjct: 2    SFVHLHVHTEYSLLDGACRIDELIDQAVAFNMPAVAITDHGVMYGVVDFYKKAIEKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +            K     +  ++LL    EGY+ LI+LVS +  L+      
Sbjct: 62   IIGCEVYVAPASRFD-----KKQRTDLFHLILLAKDFEGYKNLIKLVS-LSFLEGFYYKP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L++  ++GL+ L+   +G I      N+ + A+  +  +  +FG+  Y+ LQ +
Sbjct: 116  RVDKDLLRQY-SKGLVALSSCLAGEIPTYILQNNIERAKNAIKEYLDIFGEDFYLELQNN 174

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ Y  + +++LA    +PLVATN+  +L +ED E HD+L+ +   + ++ KDR R 
Sbjct: 175  GMEEQEYVNNYLIRLAKEFNVPLVATNDVHYLRKEDAEIHDILLCIQTGSKLNDKDRLRF 234

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + Y K+  EM+++F D+PEA+ENT +IA RC+  + ++  ILP F   E + +    
Sbjct: 235  KTNEFYFKSPDEMINLFKDVPEAIENTFKIAERCNVEIPLNNIILPVFEVPEGETL---- 290

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++        G + R  +         Q+ ++RL +E++VI +M FSGYFLIV DF+ +A
Sbjct: 291  DSYFEKLCWEGAKKRFGENI------PQEIKERLSYEISVIKQMGFSGYFLIVQDFVNYA 344

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K   IPVGPGRGS AGS+ +Y L IT+I+P R+ L+FERFLNP+R++MPD DIDFC +RR
Sbjct: 345  KSKGIPVGPGRGSAAGSLVSYVLGITNIEPTRWGLIFERFLNPERVTMPDIDIDFCFERR 404

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI YV+NKYG E VAQIITFG++ A+A++RDVGR L +PY++VDR+ KLIP  P   +
Sbjct: 405  EEVIEYVRNKYGREHVAQIITFGTMAARASVRDVGRVLDVPYNEVDRIAKLIP--PNTSI 462

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A++     R    ++P   R++EI++++EG  RHAS HAAGIVI   PL + VP+  
Sbjct: 463  E-EALSTSEELRNLVESNPQAKRIIEIAKRIEGNARHASIHAAGIVISKDPLMEYVPLQV 521

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606
               +D+ VTQF M  +E+ GL+K DFLGL+TLT++  ++  + +  G+++D+S I   D 
Sbjct: 522  MNGNDV-VTQFPMTNLEELGLLKMDFLGLRTLTVIYDTVKKIKENYGIEIDISNISLTDE 580

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y LL    T+G+FQLES GMR  L  ++P+  ED+IA+++LYRPGP+  +  Y  RK 
Sbjct: 581  KVYELLQKGDTIGVFQLESRGMRNLLRDIKPEKFEDLIAVLALYRPGPLGRLESYIKRKR 640

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+EK+  +HP ++P+L ET GVIIYQEQVM+IA  L+G++L +ADVLRRAMGKK  E M+
Sbjct: 641  GEEKVEYMHPALEPILSETYGVIIYQEQVMEIAHKLAGFTLGQADVLRRAMGKKKPEVME 700

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +Q+  F+ GA + GI + +AV IFE +AKFA+YGFNKSH+AAYA +S+QTA++K +YP E
Sbjct: 701  EQRGIFVKGAVERGIPEEVAVEIFEDMAKFAEYGFNKSHSAAYAFVSFQTAYLKVYYPKE 760

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            ++A+ +T   +N  K+ K+  +A++  I+I+PP +N   VDF V    I + L+AIK VG
Sbjct: 761  YMASLLTSVKNNTTKLSKYIAEAKRIGIKILPPDINESMVDFTVTPQGIRFGLSAIKNVG 820

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I+E      F S+ DF  R+ SK +N+R LESL+ +GA D FGYSR  LL ++D
Sbjct: 821  ENVAEAIVEEREKGKFKSIFDFIKRLSSKVINKRTLESLIKSGAFDSFGYSRRALLANID 880

Query: 907  NIQKYAQWVEKNRTNKHE--NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
             I + AQ ++K    +    ++ A  +  F +   + +FS++      + E+ +LGFY S
Sbjct: 881  KILESAQVIKKAHVGQVSLIDLEALPQDEFIN--NMPEFSIDEI---LDMEKEMLGFYVS 935

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
              P +  + +  K+     ++ +    G+ + +  ++ + ++   RK  ++ + T  +  
Sbjct: 936  YDPQEELRKLSEKLFDYTIDDLLEIESGSQVVVPGILKNVREVIDRKNQKMLFATLEDFT 995

Query: 1025 KEYEANFF 1032
             E E   F
Sbjct: 996  GEAEITVF 1003


>gi|15601899|ref|NP_244971.1| DNA polymerase III subunit alpha [Pasteurella multocida subsp.
            multocida str. Pm70]
 gi|14194670|sp|Q9CPK3|DPO3A_PASMU RecName: Full=DNA polymerase III subunit alpha
 gi|12720237|gb|AAK02118.1| DnaE [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 1159

 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1051 (40%), Positives = 618/1051 (58%), Gaps = 52/1051 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S++ G   +  ++     +   A+ +TD  N    + F  +A +AG++
Sbjct: 4    PRFVHLRVHSDFSMINGIAKVKPLIKACVDNHMVAMGLTDFTNFCGLVRFYGEALSAGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D+ ++  L     G  PF     + LL     GY  +  L+S+ Y  ++G Q 
Sbjct: 64   PIIGA--DVLVRSEL----CGDEPF----ELTLLAKNNIGYHNITLLLSKAY--ERGYQD 111

Query: 129  V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            +  +  +WL E   EG+I+L+GG +G + +      +   E  +  ++  F D  Y++L 
Sbjct: 112  LPYLDQAWLAE-HREGIIVLSGGHNGDVGKKLLKGHAAEIESAVAFYQDFFPDHFYLSLS 170

Query: 188  RHRGYDRYRESQVVQLAYT----HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            R     RY E + V LA T      LP+VATN+ LFL E+D+EAH++ +A+  S  +   
Sbjct: 171  RT---GRYEEERYVSLALTLAEEKGLPVVATNDVLFLHEDDFEAHEIRVAIHDSYTLDDP 227

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP++ T   Y ++  EM  +F+D+P ALENT+ IA+RC+  +++    LP+F   +   
Sbjct: 228  KRPKLYTNQQYFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGEYFLPQFPTGDL-- 285

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 286  ---STEDFLVKKSKEGLEERLKFLFPDEKVRQARRPEYDERLQVELDVINQMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 343  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 403  VDFCMDGRDRVIDHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   ++ +A A + + +    +D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 463  PPDPGMTLA-KAFAAEPQLQAVYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPGLI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---- 595
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R  K    
Sbjct: 522  TDFSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINTRLAKEGKP 581

Query: 596  -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VD++ IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 582  PVDIATIPLDDPASFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 641

Query: 655  IDNIVVYN--NRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +++ +V N  +RK+G E +    P      + P+L+ T GVI+YQEQVMQIAQ L+GY+L
Sbjct: 642  LESGMVQNFIDRKHGNEVVAYPDPEYQHDSLKPILEPTYGVIVYQEQVMQIAQELAGYTL 701

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM  Q+E F  GA + G+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 702  GGADLLRRAMGKKKPEEMAAQREIFEKGAIQKGVDGELAMKIFDLVEKFAGYGFNKSHSA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT EMDN +KI     +  +  +++ PP +NT    
Sbjct: 762  AYALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVAPPDINTGKHH 821

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + AIKGVG      ++ A      F  L D C+RVD KK+NRR  ESL
Sbjct: 822  FSVNEYGEIVYGIGAIKGVGEGPIEALISAREQGGIFKDLFDLCARVDLKKINRRTFESL 881

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + +GA D  G  R  L ++L++  K +    K+      ++F     +  D   +EK   
Sbjct: 882  ILSGAFDKLGPHRAALSKNLEDALKASDQHAKDAAMGQADMFGVLTESHED---VEKAYA 938

Query: 946  E----NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                 +  V  E E+  LG Y S HP+  Y   L        ++ V   RG    ++ ++
Sbjct: 939  STPRWSEKVILEGERETLGLYLSSHPISPYLKELAHYSATRLKDLVPNSRGQMSTVSGLL 998

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            VS +   T+KG+R+G  T  + +   +   F
Sbjct: 999  VSSRFAVTKKGNRLGIATLDDRSGRLDITLF 1029


>gi|330445160|ref|ZP_08308812.1| DNA polymerase III, &alpha subunit [Photobacterium leiognathi subsp.
            mandapamensis svers.1.1.]
 gi|328489351|dbj|GAA03309.1| DNA polymerase III, &alpha subunit [Photobacterium leiognathi subsp.
            mandapamensis svers.1.1.]
          Length = 1159

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1049 (39%), Positives = 628/1049 (59%), Gaps = 47/1049 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +  I+ K +    PA+AITD  NL   ++F   A  AG++
Sbjct: 4    PRFIHLRVHSDFSMIDGLAKVKPIVKKASDLGMPALAITDFTNLCGLVKFYFAAHDAGMK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +      +    G   F     + +L +  EGY+ L  L+S  Y     +  
Sbjct: 64   PIIGADFKV------QSAEMGDELF----ELTILAANNEGYKNLTLLISEAYQRGHVQHL 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL     EGLI+L+GG +G + +A    + ++ +  +  +K  F D  Y+ L R
Sbjct: 114  PVIDKEWLIN-HREGLIVLSGGKNGDVGKALLKGNQKMVDSFISFYKTHFPDSYYLELVR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA   +LP+VATN+   L+ + ++AH++ +A+     +   +RP+
Sbjct: 173  TGRADEEAYLHFAVELAEKEDLPVVATNDVRLLTADQFDAHEIRVAIHDGYTLVDPNRPK 232

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + +   YL++  EM  +F+D+PEAL+N+VEIA+RC+  +++    LP F   +       
Sbjct: 233  LYSAQQYLRSEEEMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD EL V+ +M F GYFLIV +F
Sbjct: 288  IEDFLVMKSKEGLEERLEFLFPDPEVRAARRPEYDERLDVELQVVNQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFDIDFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDIDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P +P
Sbjct: 408  MDKRDLVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPAEP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  ++  AD  V  L+++ + LEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEAEPQLGQSYDADEEVRDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R ++     V++
Sbjct: 527  PLYCDAEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLIEQGKEPVNI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + I  DD +++ +L    +  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIAMDDPKSFAMLQRSESTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +V N  +RK+G+E +          S+  ++DP    T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 647  MVDNFIDRKHGREAVSYPDEKWQHESLKEILDP----TYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAVFEEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +KI     +  + N++++PP VN     
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKIISLVDECHRMNLKLLPPDVNKGLYR 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   + Y + A+KGVG     +I+ A      F  L DFC+R+D+KK+N+RVLE L
Sbjct: 823  FNVDDEGAVVYGIGAVKGVGEGPIENIISAREKGGHFKDLFDFCARIDTKKVNKRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + +GA+D  G +R  +L +LD+  K A    +       ++F        +++  +  ++
Sbjct: 883  IKSGAMDRLGPNRAAMLATLDDAIKAASQHHQAEAFGQTDMFGVLTAA-PEEVEHKYANI 941

Query: 946  ENS--SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
              S   V  E E+  LG Y +GHP++ Y P L+       +++  T R     +A +V++
Sbjct: 942  PESPDKVWLEGERETLGLYLTGHPINAYIPELKHYTTWRLKDAQQTGRDKVATVAGLVIA 1001

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG +T  + +   E   F
Sbjct: 1002 ARVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|301063202|ref|ZP_07203753.1| putative DNA polymerase III subunit alpha [delta proteobacterium
            NaphS2]
 gi|300442697|gb|EFK06911.1| putative DNA polymerase III subunit alpha [delta proteobacterium
            NaphS2]
          Length = 1155

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1048 (40%), Positives = 631/1048 (60%), Gaps = 48/1048 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA+ ++ +L+K  A    ++AITD  N+F  ++F  +A  AGI+PI
Sbjct: 6    FVHLHVHTEYSLLDGAIRIDRMLEKAKAQGMDSVAITDHGNMFGVVDFFDRAAKAGIKPI 65

Query: 71   IGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-K 126
            IGC++ +   D +D     N G    P    +VLLV   +GY+ L  LV+   L  QG  
Sbjct: 66   IGCEVYVAPGDRRDRTPSQNGG----PNAYHLVLLVMNEQGYKNLSTLVTLGNL--QGFY 119

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               R+ +S L+E   +GL+ L+   +G +           A+++      +F GDR ++ 
Sbjct: 120  YHPRVDMSALREY-NQGLVALSACLAGHVPYLIRNGQMDAAKEKAREMASVFDGDRFFLE 178

Query: 186  LQRHRGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            LQ     ++  E +VV     +L+    +P+VATN+  +L+ EDYEAHDVL+ +     V
Sbjct: 179  LQA----NKMAEQKVVNRGLRELSKDLSIPMVATNDCHYLNREDYEAHDVLLCIQTGKSV 234

Query: 241  SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             ++ R R T +  Y K R EM     D  EAL NT  +AR C + +        RF E +
Sbjct: 235  DEEKRLRFTSNEFYFKTRREMEEALPDDAEALNNTAHVARLCQYEM--------RFGEYK 286

Query: 300  CDDIQKEEENELRNKAVA----GLEVRLAQGAIAKGYHA----QDYRQRLDFELNVIARM 351
                   E+  L +  +A    GL  RLAQ    +G       ++Y +RL +EL +I +M
Sbjct: 287  FPVFHVPEKQSLNDMLMALSRKGLARRLAQKEDEEGPIGPELRREYEERLQYELEIILKM 346

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F+GYFLIVADFI++A  ++I VGPGRGS AGS+ AY L IT+I+P+++ LLFERFLNP 
Sbjct: 347  GFAGYFLIVADFIEYALNHDIAVGPGRGSAAGSLVAYCLNITNIEPIKYGLLFERFLNPA 406

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDFC + RD+VI+YV +KYG   V+QIITFG+++A+  +RDVGR L +P S+
Sbjct: 407  RISMPDIDIDFCINGRDQVIQYVADKYGRNNVSQIITFGTMKARGVIRDVGRTLNVPLSE 466

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            VDR+ KL+P  P   +  +AI ++   +    A     +LL IS+ LEGL RHASTHA G
Sbjct: 467  VDRIAKLVPEGPGVKLD-RAIREEPELKSLENAPGRSQKLLSISRSLEGLARHASTHACG 525

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-A 590
            +VI DRPL++ +P+Y+  + ++ + QF M  +EK GLIKFDFLGLKTLT+L+++L  + A
Sbjct: 526  VVISDRPLTEYLPLYKGSKGEI-MAQFTMDKVEKLGLIKFDFLGLKTLTVLKEALKLIEA 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              G+K+DL+ I  +D  TY L     T G+FQLESSGM++ L  + P+  EDIIALV+LY
Sbjct: 585  SAGLKIDLNRISLEDKGTYQLCADGKTTGVFQLESSGMKELLRKLNPEIFEDIIALVALY 644

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+ + +V  + N K+GK ++    P + P+LKET GVI+YQEQVM+IAQ+L+ Y+++
Sbjct: 645  RPGPLGSNMVDDFINGKHGKIRVSYFLPQLKPILKETYGVILYQEQVMKIAQVLANYTMA 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            EAD LR+A+GKK  E M + + RFI GA +NG+S  +A  +F L+ KF  YGFNKSH+AA
Sbjct: 705  EADELRKAVGKKKPEVMARHRARFIDGAKENGVSADMAEKLFGLIEKFGGYGFNKSHSAA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+I+YQTA++K HYPV+F+ A +TL+M N +K  K   + R   IQI+PP VN    DF
Sbjct: 765  YAMIAYQTAYLKAHYPVQFMCALLTLDMGNQDKTIKNIAECRTMGIQILPPDVNESQADF 824

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASADK--PFDSLEDFCSRVDSKKLNRRVLESLV 886
             V +++I + LAA+K VG      ++E   DK   F  L DFC R++  K+NRRVLE L+
Sbjct: 825  SVVEDQIRFGLAAVKNVGQKAVEMLIE-ERDKHGHFKGLLDFCRRMEGSKVNRRVLEGLI 883

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKY-AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              GA D     R +L + LD+  K      + N+ N   ++   E G     + L     
Sbjct: 884  QCGAFDFTNAFRSRLFEGLDDALKLCGARHDPNQLNMFGSLELGE-GEAGGLLELPDLPE 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                 +   E+  LGFY +GHPL+ ++  +++       +       + ++LA +V S +
Sbjct: 943  WEEKEKLRREKEALGFYITGHPLEGFQKAIKRFATCLVNDLPTQNDKDQVKLAGVVESLK 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K+T++G ++  +   +     E   FP
Sbjct: 1003 LKRTKRGDKMAIMHLEDLTGSTEVVVFP 1030


>gi|157962689|ref|YP_001502723.1| DNA polymerase III subunit alpha [Shewanella pealeana ATCC 700345]
 gi|157847689|gb|ABV88188.1| DNA polymerase III, alpha subunit [Shewanella pealeana ATCC 700345]
          Length = 1177

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1049 (40%), Positives = 609/1049 (58%), Gaps = 39/1049 (3%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            ++   P FVHL+VHS +S+ +G   +  I+ K+A    PA+A+TD  N+   ++F +   
Sbjct: 20   HIMSEPRFVHLRVHSDFSMSDGLSKVKPIIAKVAELGMPAVALTDQTNMCGLVKFYEACH 79

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTP-FPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              G++PIIG    +            K P F    SI  L     GY  L  L+S  YL 
Sbjct: 80   GNGVKPIIGTDFWV------------KVPGFDEFCSITALAMDNTGYSNLTLLISDAYLR 127

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                    I   WL +  +EGLI+L+G   G + RA    +    +  +  +K  F DR 
Sbjct: 128  GNINDKAVIDHEWLAKY-SEGLILLSGAKDGDVGRALLKENQNQVDSLIEFYKTHFPDRY 186

Query: 183  YVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ L R    D  R   + + LA   +LP+VATN  +F   E ++AH++ +A+     ++
Sbjct: 187  YLELLRTGRPDEERYLHMAIALAEQKDLPVVATNQVVFNKPEQFDAHEIRVAIYDGFTLA 246

Query: 242  QKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               RP+   D  Y K+  EM  +F D+PEA++NTVEIA+RC+  +++H   LP F   + 
Sbjct: 247  DPRRPKKYSDQQYFKSSDEMCELFEDIPEAIQNTVEIAKRCNATVRLHEYFLPNFPTGDL 306

Query: 301  DDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                   E+ L + +  GLE RL         +     +Y +RLD EL VI +M F GYF
Sbjct: 307  -----TIEDFLVDVSEKGLEERLEFLFPDPEVRAEKRPEYDERLDIELKVINQMGFPGYF 361

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV +FIQW K N+IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 362  LIVMEFIQWGKDNDIPIGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPD 421

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC DRRDEVI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ K
Sbjct: 422  FDVDFCMDRRDEVIDHVADLYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK 481

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +P   ++ +A   +   +E+   D  V  L+++ + LEG+ R+A  HA G+VI   
Sbjct: 482  MIPAEPGMTLA-KAFEVEPGLQESYDGDEDVKDLIDMCRILEGVTRNAGKHAGGVVIAPT 540

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +     K  
Sbjct: 541  KITDFSPIYCDTEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMVNSVKDKNG 600

Query: 596  ---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               V +  I   D + + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RP
Sbjct: 601  EERVRIESISLTDPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRP 660

Query: 653  GPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V N   RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+L+GY
Sbjct: 661  GPLQSGMVDNFIERKHGREEVSYPDAEYQHESLKELLSPTYGIILYQEQVMQIAQVLAGY 720

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  F +GA +NG+   +++ IF+L+ KFA YGFNKSH
Sbjct: 721  TLGGADMLRRAMGKKKPEEMAKQRGTFEAGAIENGVDGPLSMKIFDLVEKFAGYGFNKSH 780

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA++SYQT W+KTHYP +F+AA M+ +MDN +KI     +  +  + ++PP VN   
Sbjct: 781  SAAYALVSYQTLWLKTHYPAQFMAAVMSADMDNTDKIVTLVDECERMGMPLLPPDVNKGL 840

Query: 826  VDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V D+  I Y + A+KGVG      I++A  + PF  L DFC+R+D KKLNRRV+E 
Sbjct: 841  FRFTVDDDLNIVYGIGAVKGVGEGPVDSILKARENGPFIDLFDFCARIDLKKLNRRVIEK 900

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKF 943
            L+ AGALD  G  R  ++ +L    + A    K       ++F        D K    + 
Sbjct: 901  LICAGALDNLGPHRAAMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVEC 960

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
            +     V  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+
Sbjct: 961  TPWPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVVA 1020

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++GS++G VT  + +   E   F
Sbjct: 1021 TRVMMTKRGSKMGLVTLDDKSARLEVMLF 1049


>gi|261868771|ref|YP_003256693.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans D11S-1]
 gi|261414103|gb|ACX83474.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans D11S-1]
          Length = 1158

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1053 (40%), Positives = 621/1053 (58%), Gaps = 56/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHLQVHS +S+++G   +  ++     +   A+ +TD  N    + F  +A ++G++
Sbjct: 4    PRFVHLQVHSDFSMIDGIAKVKPLVKACVGNGMVAVGLTDFTNFCGLVRFYGEALSSGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D+ +Q  L     G   F     + LL    EGY+ +  L+S+ Y  ++G   
Sbjct: 64   PIIGT--DVLVQSAL----CGDEKF----RLTLLAKNNEGYKNITLLLSKAY--ERGYAD 111

Query: 129  V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL E    G+I+L+GG +G + +    ++    +  +  +++ F D  Y+ L 
Sbjct: 112  WPYIDQQWLVE-HRAGVIVLSGGVNGDVGKKLLRSNPDELKSAVDFYREFFPDHFYLTLT 170

Query: 188  RHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R    D  R     ++LA   +LP+VATN+  FL  ED+EAH++ +A+     +    RP
Sbjct: 171  RTGRPDEERYIKAALELAEQQQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKRP 230

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            ++ T   Y ++  EM  +F+D+P ALENTV IA+RC+  +++    LP+F   +      
Sbjct: 231  KLYTSQQYFRSEQEMCDLFADVPSALENTVLIAQRCNVTIRLGEYFLPQFPTGDL----- 285

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+ L  +A  GLE RL      +   A+   +Y +RL  EL+VI +M F GYFLIV +
Sbjct: 286  TTEDYLVKRAKDGLEERLKVLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFLIVME 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 346  FIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI +V   YGH  V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P D
Sbjct: 406  CMDGRDRVIDHVAEMYGHGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPPD 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   ++ +A   + + +E   AD  V  ++++++KLEG+ R+A  HA G+VI    ++  
Sbjct: 466  PGMTLA-KAFEAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
             P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R  K     VD
Sbjct: 525  SPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKLLVD 584

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +S IP DD +++ +L    T  +FQLES GM+  ++ ++PDC EDIIALV+L+RPGP+ +
Sbjct: 585  ISAIPLDDQQSFDVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQS 644

Query: 658  IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  A
Sbjct: 645  GMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 705  DLLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGGLAMKIFDLVEKFAGYGFNKSHSAAYA 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+K HYP EF+AA MT EMDN +KI     +  +  ++++PP +NT    F V
Sbjct: 765  LVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECMRMGLKVVPPDINTGKHHFSV 824

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             +N  I Y + AIKGVG      ++EA   D  F +L D C+RVD KK+NRR  ESL+ +
Sbjct: 825  NENGEIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIKS 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D  G  R  L Q+L++  + +    K+      ++F          +T     VENS
Sbjct: 885  GAFDKLGPHRAALQQNLEDALRASDQHAKDEALGQVDMFG--------VLTETNEEVENS 936

Query: 949  SVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
                         + E+  LG Y S HP+  Y   L        +E V   RG     + 
Sbjct: 937  YANIAPWTEKTILDGERETLGLYLSSHPVTRYLKELAHYSPVRLKELVPNYRGQMSTASG 996

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T+KG+ IG  T  + +   +   F
Sbjct: 997  LVINTRVAVTKKGNHIGIATIDDRSGRLDLTLF 1029


>gi|297538821|ref|YP_003674590.1| DNA polymerase III subunit alpha [Methylotenera sp. 301]
 gi|297258168|gb|ADI30013.1| DNA polymerase III, alpha subunit [Methylotenera sp. 301]
          Length = 1169

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/983 (42%), Positives = 605/983 (61%), Gaps = 38/983 (3%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           K P FVHL+ HS YS+++G + +++ + +   D+ PA+A+TD +NLF A++F + A   G
Sbjct: 10  KQPIFVHLRCHSEYSIVDGIVRIDDYVKQALNDKMPALALTDLSNLFGAIKFYKTARGKG 69

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I+PI+GC        ++ + N      PT   ++LL  +  GY  L +L+SR YL +Q +
Sbjct: 70  IKPILGC--------DIWLENTANRDQPT--RLLLLCQSHAGYLLLCQLLSRAYLSNQYR 119

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                   W  E GTEGLIML+G  +G + +A   ++  +A K   +++ LF DR Y+ +
Sbjct: 120 GRAEFKREWFVECGTEGLIMLSGAIAGDVGQACTQDNLALATKLAQSWENLFPDRFYLEV 179

Query: 187 QR-----------HRGYDRYRES---QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
           QR                  +E+   QV  +A++  LP+VAT+   F++ +D+ AH+   
Sbjct: 180 QRTASVAESSTPESNALQHQQENYIQQVRSIAHSLNLPIVATHPIQFITPDDFRAHEART 239

Query: 233 AVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
            ++   V++   RP+  T + Y K +++M ++F D+PEAL N+VEIA+RC+ +L +    
Sbjct: 240 CISEGYVLADTRRPKNFTTEQYFKPQADMATLFEDIPEALTNSVEIAKRCNLMLTLGKNY 299

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
           LP F     + + +    E R   +  LEV L      +      Y  RLDFE  VI +M
Sbjct: 300 LPNFPTPNNESLNEYLIAEARRGLLQRLEV-LYPNEEVRAAKKPAYDARLDFETKVINQM 358

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            F+GYFLIVADFIQWAK N +PVGPGRGSGAGSV AY+L ITD+DPL ++LLFERFLNPD
Sbjct: 359 GFAGYFLIVADFIQWAKGNGVPVGPGRGSGAGSVVAYSLKITDLDPLEYNLLFERFLNPD 418

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R+SMPDFDIDFCQ+ RD VI YV+ KYG + V+QI TFG++ AKA +RDVGR L +P+  
Sbjct: 419 RVSMPDFDIDFCQEGRDRVIDYVKQKYGLDAVSQIATFGTMAAKAVIRDVGRVLDLPFYF 478

Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
           VD + KLIP +    +S  A+  + +  E R  +  +  LLE++ +LEGL R+   HA G
Sbjct: 479 VDGISKLIPLELGITLS-DALVKEPQLAERRENEEELKELLELALRLEGLVRNIGMHAGG 537

Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLA 590
           ++I    +S   P+Y        V+Q++   +E  GL+KFDFLGL+TLT+L+ +L +   
Sbjct: 538 VLISPGKISDFSPVYCQADGASLVSQYDKDDVEAVGLVKFDFLGLRTLTILELALANANK 597

Query: 591 QRGVK----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
           QR  +    +    +P +D  T+ LL T  T  +FQLES GM+  L+   PDC EDIIAL
Sbjct: 598 QRATEGLAPLSFETLPLNDKPTFQLLKTANTTAVFQLESKGMKDMLKQALPDCFEDIIAL 657

Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
           V+LYRPGP+D I  +  RK+GK+++   HPL +P+LKET G+ +YQEQVMQIAQ+++GYS
Sbjct: 658 VALYRPGPMDLIPDFCRRKHGKQRVEYPHPLTEPILKETYGIAVYQEQVMQIAQVVAGYS 717

Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
           L  AD+LRRAMGKK  EEMD Q++ F+ GA+KN +++  A+ +F+LL KFA YGFNKSHA
Sbjct: 718 LGGADLLRRAMGKKKVEEMDAQRKTFVEGATKNNMTERQAMELFDLLEKFAGYGFNKSHA 777

Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
           AAYA+++YQTA++K HYP  FLA++M+ +M+N + ++ F +D     ++I+ P VN    
Sbjct: 778 AAYALVAYQTAYLKAHYPAAFLASTMSADMNNTDSVRIFYEDCAPNQVKILSPDVNQSEY 837

Query: 827 DFK-VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884
            F  +  N++ Y L A+KG G      I++A   D PF  L DFC+R+D +K+NRRV+ES
Sbjct: 838 KFTPISKNQVLYGLGAVKGTGQAAIEVILQARRKDGPFKDLFDFCNRLDLRKVNRRVVES 897

Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
           L+ AGA D    SR  LL     +       E+N  N ++N    E    +  I L    
Sbjct: 898 LIRAGAFDKLSPSRNALLAG---VAMAMAAAEQNSANSNQNSLFGEVADKAANI-LPMVP 953

Query: 945 VENSSVRFENEQRVLGFYFSGHP 967
                 R + E+  LGFYFSGHP
Sbjct: 954 DWTEQQRLQEEKAALGFYFSGHP 976


>gi|212636262|ref|YP_002312787.1| DNA polymerase III subunit alpha [Shewanella piezotolerans WP3]
 gi|212557746|gb|ACJ30200.1| DNA polymerase III alpha subunit [Shewanella piezotolerans WP3]
          Length = 1156

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1043 (40%), Positives = 609/1043 (58%), Gaps = 37/1043 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G   +  IL K++    PA+A+TD  N+   ++F      AGI+
Sbjct: 4    PLFVHLRVHSDFSMSDGLSKVKPILAKVSELGMPAVALTDQTNMCGLVKFYGGCHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG +  + +    ++            SI  +    EGY  L  L+S  YL       
Sbjct: 64   PIIGTEFWVQVPGVDELC-----------SITAIAMNNEGYSSLTLLISDAYLRGHIDDR 112

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   +GLI+L+GG  G + RA   ++    +  +  ++  F DR Y+ L R
Sbjct: 113  AVIDHEWLAKY-NDGLILLSGGRHGDVGRALLKDNKAQVDSLIEFYQTHFPDRYYLELLR 171

Query: 189  HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D  R   + V+LA   +LP+VATN  +F   E +EAH++ +A++    ++   RP+
Sbjct: 172  TGRPDEERYLHMAVELAQAKDLPVVATNQVVFNKPEQFEAHEIRVAISDGFTLADPRRPK 231

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  Y K+  EM  +F D+PEA++NTVEIA+RC+  ++++   LP F   +       
Sbjct: 232  KYSDQQYFKSSEEMCELFEDIPEAIQNTVEIAKRCNVTVRLNEYFLPNFPTGDL-----T 286

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L + +  GLE RL         +     +Y +RLD EL VI  M F GYFLIV +F
Sbjct: 287  IEDFLVDVSEKGLEERLEFLFPDPEVRAEKRPEYDERLDIELKVINEMGFPGYFLIVMEF 346

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW K N+IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 347  IQWGKDNDIPIGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 406

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRRDEVI +V + YG + V+QIITFG++ AKA +RDVGR    PY  VDR+ K+IP +P
Sbjct: 407  MDRRDEVIDHVADLYGRDAVSQIITFGTMAAKAVIRDVGRVQGHPYGFVDRISKMIPAEP 466

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   +   +E+      V  L+++ + LEG+ R+A  HA G+VI    ++   
Sbjct: 467  GMTLA-KAFEVEPALQESYDGSEEVKDLIDMCRILEGVTRNAGKHAGGVVIAPTKITDFS 525

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +     K     V +
Sbjct: 526  PIYCDSEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMVNAVKDKNGEDRVRI 585

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I   D + + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 586  ESISLTDPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 645

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N   RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 646  MVDNFIERKHGREEVSYPDAEYQHESLKELLSPTYGIILYQEQVMQIAQVLAGYTLGGAD 705

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  G+ KNG+   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 706  MLRRAMGKKKPEEMAKQRGTFEEGSIKNGVDGPLSMKIFDLVEKFAGYGFNKSHSAAYAL 765

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTHYP +F+AA M+ +MDN +KI     +  +  + ++PP VN     F V 
Sbjct: 766  VSYQTLWLKTHYPSQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFRFTVD 825

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            D+  I Y + A+KGVG      I+EA  D PF  L DFC+R+D KKLNRRV+E L+ AGA
Sbjct: 826  DDLNIVYGIGAVKGVGEGPVDSILEARKDGPFTDLFDFCARIDLKKLNRRVIEKLICAGA 885

Query: 891  LDCFGYSRMQLLQSL-DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            LD  G  R  L+ +L + I+   Q  +     +H+           DK      +     
Sbjct: 886  LDNLGPHRAALVATLPEAIRAADQHAKAEAIGQHDMFGLLNNEPEDDKQQFVDCTPWPDK 945

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
            V  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +   T
Sbjct: 946  VWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTVKAAGLVVATRVMMT 1005

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
            ++G+++G VT  + +   E   F
Sbjct: 1006 KRGAKMGLVTLDDKSARLEVMLF 1028


>gi|251791881|ref|YP_003006601.1| DNA polymerase III subunit alpha [Aggregatibacter aphrophilus NJ8700]
 gi|247533268|gb|ACS96514.1| DNA polymerase III subunit alpha [Aggregatibacter aphrophilus NJ8700]
          Length = 1158

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1052 (40%), Positives = 625/1052 (59%), Gaps = 54/1052 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHLQVHS +S+++G   +  ++     +   A+A+TD  N    + F  +A ++G++
Sbjct: 4    PRFVHLQVHSDFSMIDGIAKVKPLVKACVENNMVAMALTDFTNFCGLVRFYGEALSSGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D+ +Q +L     G+  F     + LL    EGY+ +  L+S+ Y  ++G   
Sbjct: 64   PIIGA--DVLVQSDL----CGEERF----RLTLLAKNNEGYKNITLLLSKAY--ERGYAD 111

Query: 129  V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            V  I   WL E  T G+I+L+GG +G + +    +++   +  +  +++ F D  Y+ L 
Sbjct: 112  VPYIDQQWLVEHRT-GVIVLSGGVNGDVGKKLLRSNTDELKSAVDFYREFFPDHFYLTLT 170

Query: 188  RHRGYDRYRESQVVQLAYT----HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            R     R  E + +Q A T     +LP+VATN+  FL E+D+EAH++ +A+     +   
Sbjct: 171  RT---GRPDEEEYIQAALTLAEQTDLPVVATNDVCFLQEDDFEAHEIRVAIHDGYTLEDP 227

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  T   Y ++  EM  +F+D+P ALENT+ IA+RC+  +++    LP+F   +   
Sbjct: 228  KRPKNYTGQQYFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGEYFLPQFPTGDL-- 285

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  +A  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 286  ---STEDYLVKRAKEGLEERLKVLFPDEKVRTERRPEYDERLQVELDVINQMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 343  VMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 403  VDFCMDGRDRVIEHVAEMYGRGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLV 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   ++ +A   + + +E   AD  V  ++++++KLEG+ R+A  HA G+VI    +
Sbjct: 463  PPDPGMTLA-KAFEAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---- 595
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R  K    
Sbjct: 522  TDFSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKP 581

Query: 596  -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VD++ IP DDH+++ +L    T  +FQLES GM+  ++ ++PDC EDIIALV+L+RPGP
Sbjct: 582  LVDINTIPLDDHQSFEVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGP 641

Query: 655  IDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 642  LQSGMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTL 701

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 702  GGADLLRRAMGKKKPEEMAKQRSVFEEGAIKNGVDGDLSMKIFDLVEKFAGYGFNKSHSA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT EMDN +KI     +  +  ++++PP +NT    
Sbjct: 762  AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECMRMGLKVVPPDINTGKHH 821

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +N  I Y + AIKGVG      ++EA   D  F +L D C+RVD KK+NRR  ESL
Sbjct: 822  FSVNENGEIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESL 881

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + +GA D  G  R  L ++L++  + +    K+      ++F    G  ++     + S 
Sbjct: 882  IKSGAFDKLGPHRAALQRNLEDALRASDQHAKDEALGQTDMF----GVLTETNEEVEHSY 937

Query: 946  EN-----SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
             N          + E+  LG Y S HP+  Y   L        +E     RG     + +
Sbjct: 938  ANIAPWTEKTILDGERETLGLYLSSHPVSRYLKELSHYSPVRLKELTPNYRGQMSTASGL 997

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            VV+ +   T+KG+ IG  T  + +   +   F
Sbjct: 998  VVNTRIAVTKKGNHIGIATIDDRSGRLDLTLF 1029


>gi|290473672|ref|YP_003466544.1| DNA polymerase III subunit alpha [Xenorhabdus bovienii SS-2004]
 gi|289172977|emb|CBJ79748.1| DNA polymerase III, alpha subunit [Xenorhabdus bovienii SS-2004]
          Length = 1144

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1036 (40%), Positives = 615/1036 (59%), Gaps = 46/1036 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G     +++ K+A    PA AITD  NL   ++F   A +AGI+PIIG   D  ++ 
Sbjct: 1    MIDGLAKTGSLIKKVAKLDMPAFAITDFTNLCGLVKFYGSAHSAGIKPIIGA--DFYVES 58

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            +L               + +L    EGYQ L  L+S  Y    G     I   WL +   
Sbjct: 59   DLLGDEYAH--------LTILARNNEGYQNLTFLISEAYQKGYGAIGPTIKQEWLIKY-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQV 200
             GLI+L+GG  G + +     +  +A++ L  +++ F D  Y+ L R    D        
Sbjct: 110  AGLILLSGGRMGDVGKFLLRGNRAMADQCLDFYQEHFPDSYYLELIRTGRQDEENYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V++A    LP+VATN+  FL  +D+EAH++ +A+     ++   RP+  +P  YL++  E
Sbjct: 170  VEVAAEKNLPVVATNDVCFLESDDFEAHEIRVAIHDGYTMADPKRPKNYSPQQYLRSEQE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEAL+N+VEIA+RC+  +++    LP+F   +        E+ L  K+  GL
Sbjct: 230  MCELFSDIPEALQNSVEIAKRCNVTIRLGEYFLPQFPTGDM-----STEDYLVEKSKQGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EDRLNFLYPDPQIRAEKRSEYDERLDIELEVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDIDPLAFDLLFERFLNPERISMPDFDVDFCMEKRDQVIDHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A A + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFAAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVRVLIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPIYCDPEGLNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +LD +  R        +D++ IP DD  ++ +
Sbjct: 524  QFDKNDVEYAGLVKFDFLGLRTLTIINWALDMVNARRTHKNLEPIDITAIPLDDQISFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  ELSYPDVEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKQPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA   GI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAISQGINGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V D + I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDESEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA   +  F  L D C+RVD+KKLNRRV+E L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAILEARQKEGHFKELFDLCARVDTKKLNRRVMEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS-----SVRFENEQR 957
             SL++  K A    K       ++F    G  ++K    + S  ++      V  + E+ 
Sbjct: 884  SSLEDALKAADQHAKAEAIGQTDMF----GVLAEKPEQVELSYASTPKWPEQVVLDGERE 939

Query: 958  VLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             LG Y +GHP+  Y K I R       ++   T RG    +  +V++ +   T++G+RIG
Sbjct: 940  TLGLYLTGHPITSYLKEIERYTNGLRLKDVSPTPRGQVTTVVGLVLASKILTTKRGNRIG 999

Query: 1017 WVTFSEPAKEYEANFF 1032
              T  + +   E   F
Sbjct: 1000 ICTLDDRSGRLEIMLF 1015


>gi|145638463|ref|ZP_01794073.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittII]
 gi|145272792|gb|EDK12699.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittII]
 gi|309751597|gb|ADO81581.1| DNA polymerase III alpha subunit [Haemophilus influenzae R2866]
          Length = 1159

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1057 (40%), Positives = 619/1057 (58%), Gaps = 56/1057 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +      K T  G   F     + LL    EGY+ +  L+S+ Y   +
Sbjct: 61   SGMKPIIGADVKV------KSTLCGDEYF----YLTLLAKNNEGYKNITLLLSKAY--QR 108

Query: 125  GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            G   +  I   WL E   EG+I+L+GG+ G + +     +    E  +  +++ F D  Y
Sbjct: 109  GYNDLPYIDQDWLIE-HREGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFY 167

Query: 184  VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L R    D  R  Q  ++LA +H LPLVATN+ +FL  +D+EAH++ +A+     +  
Sbjct: 168  LALTRTGKPDEERYIQAALKLAKSHGLPLVATNDVMFLKSDDFEAHEIRVAIHDGYTLDD 227

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RP+  T   Y ++  EM  +F+D+P ALENT+ IA+RCS  L++    LP+F   +  
Sbjct: 228  PKRPKYYTSQQYFRSEDEMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L  K+  GLE RLA        +      Y +RL  EL+VI +M F GYFL
Sbjct: 287  ----STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 403  DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   ++ +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    
Sbjct: 463  IPLDPGMTLA-KAFEAEPQLQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTL 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594
            ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R V    
Sbjct: 522  ITDFSPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGK 581

Query: 595  -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPG
Sbjct: 582  PRVDIAAIPLDDPESFELLKRAETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641

Query: 654  PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+
Sbjct: 642  PLQSGMVDNFIDRKHGREEVSYPDAEYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYT 701

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+
Sbjct: 702  LGGADLLRRAMGKKKPEEMAKQRSVFKEGAVKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N    
Sbjct: 762  AAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINVGKH 821

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884
             F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ES
Sbjct: 822  HFSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFES 881

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ +GA D  G  R  L ++L++  K +    K+      ++F     T  D        
Sbjct: 882  LIMSGAFDKLGPHRAALSKNLEDALKASDQHAKDEAMGQTDMFGVLTETHED-------- 933

Query: 945  VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
            VEN+             + E+  LG Y S HP+  Y   L        ++     RG   
Sbjct: 934  VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +A ++VS +   T+KG+R+G  T  + +   +   F
Sbjct: 994  TVAGLLVSSRIAITKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|313201481|ref|YP_004040139.1| DNA polymerase III subunit alpha [Methylovorus sp. MP688]
 gi|312440797|gb|ADQ84903.1| DNA polymerase III, alpha subunit [Methylovorus sp. MP688]
          Length = 1133

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/965 (42%), Positives = 604/965 (62%), Gaps = 35/965 (3%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G + + + +   AAD+ PA+A+TD +NLF A++F + A   G++P++GC L ++ + 
Sbjct: 1   MVDGTVRIGDYVKAAAADRMPALALTDLSNLFGAVKFYKSARGKGLKPVLGCDLWLENET 60

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
           N         P+     ++LL  T  GY +L EL+SR YL +Q +    I   WL E G 
Sbjct: 61  NRDQ------PY----RLLLLCQTHAGYLKLCELLSRAYLENQHRGRAEIKRQWLVEAGG 110

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
           EGLIML+G  +G + +A    + Q A      +  LF +R Y+ LQR       +  S+ 
Sbjct: 111 EGLIMLSGAMAGDVGQAILQGNQQAALALAQQWAALFPNRFYIELQRAGHAQQEFYISRA 170

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           + LA   +LP+VAT+   F+  +D++AH+  + +A   V++   RP+  TP+ + K ++E
Sbjct: 171 LALAGELDLPVVATHPVQFMQADDFKAHEARVCIAEGYVLADNRRPKHFTPEQFFKTQAE 230

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M ++F+D+P+AL N+VEIA+RC+  L +    LP+F     + +    +  L  +A  GL
Sbjct: 231 MATLFADVPQALANSVEIAKRCNLTLTLGKNYLPQFPTPNGESL----DEYLVVQAKLGL 286

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RL         +      Y  RL+FE N+I +M F GYFLIVADFI WAK N +PVGP
Sbjct: 287 EKRLQVLYPDEAVRDAKRPVYLTRLEFETNIIIQMGFPGYFLIVADFINWAKNNGVPVGP 346

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGSV AY+L ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ+ RD VI YV++
Sbjct: 347 GRGSGAGSVVAYSLGITDLDPLQYALLFERFLNPERVSMPDFDIDFCQEGRDRVIDYVKH 406

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
           KYG   V+QI TFG++ AKA +RDVGR L +P++ VD + KLIPN+    +S  A+  + 
Sbjct: 407 KYGLASVSQIATFGTMAAKAVIRDVGRVLDLPFNFVDGIAKLIPNELGITLS-DALEKEP 465

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           + +E R  +  V+ LLE++ +LEGL R+   HA G++I    +S   P+Y     +  V+
Sbjct: 466 QLKERREQEEEVNELLELALRLEGLTRNIGMHAGGVLISPGKISDFSPIYCQQNGESLVS 525

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK----VDLSLIPFDDHETYHL 611
           Q++   +E  GL+KFDFLGL+TLT+L  +L+    QR +K    +D   +P +D  TY L
Sbjct: 526 QYDKDDVEAVGLVKFDFLGLRTLTILAMALENANVQRALKELPPLDFETLPINDKPTYQL 585

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
           L +  T  +FQLES GM+  L+  +PDC EDIIALV+LYRPGP+D I  +  RK+G++++
Sbjct: 586 LKSANTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYRPGPMDLIPDFCRRKHGQQRV 645

Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              HP  +P+LKET G+++YQEQVMQIAQ+++GYSL  AD+LRRAMGKK KEEMD Q+  
Sbjct: 646 EYPHPATEPILKETYGIMVYQEQVMQIAQVVAGYSLGGADLLRRAMGKKKKEEMDAQRAV 705

Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
           F+ GA KNG  +  A  +F+L+ KFA YGFNKSHAAAYA+++Y TA++K HYP  FLAA+
Sbjct: 706 FVEGAVKNGTPEKQAAELFDLMEKFASYGFNKSHAAAYALVAYHTAYLKAHYPAAFLAAT 765

Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTA 850
           M+ +M+N + +  F  D     ++++ P +N     FK + D ++ Y L A+KG G    
Sbjct: 766 MSADMNNTDSVHIFYDDCAANGVEVLAPDINQSEFRFKPISDKQVLYGLGAVKGTGWAAI 825

Query: 851 RHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
             I+ A  A+ PF  L DFC R+D +K+NRRV+ESL+ AGA D    +R  LL  +    
Sbjct: 826 EVILAAREAEGPFKDLFDFCRRLDLRKVNRRVIESLIRAGAFDKLEPNRAALLAGVSLAI 885

Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHP 967
             A+  +    +   ++F    G  SD +  TL K +  +   + + E+  LGFYFSGHP
Sbjct: 886 SAAE--QSGAASGQNSLF----GEMSDSVAHTLPKVNAWSEQEKLQQEKSALGFYFSGHP 939

Query: 968 LDVYK 972
            + YK
Sbjct: 940 YEGYK 944


>gi|315633674|ref|ZP_07888964.1| DNA-directed DNA polymerase III alpha subunit [Aggregatibacter segnis
            ATCC 33393]
 gi|315477716|gb|EFU68458.1| DNA-directed DNA polymerase III alpha subunit [Aggregatibacter segnis
            ATCC 33393]
          Length = 1172

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1049 (40%), Positives = 621/1049 (59%), Gaps = 48/1049 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHLQVHS +S+++G   +  ++     +   A+ +TD  N    + F  +A ++G++
Sbjct: 18   PRFVHLQVHSDFSMIDGIAKVKPLVKACVENNMVAMGLTDFTNFCGLVRFYGEALSSGVK 77

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D+ +Q+ L     G+  F     + LL    EGY+ +  L+S+ Y  ++G   
Sbjct: 78   PIIGA--DVLVQNEL----CGEERF----RLTLLAKNNEGYKNITLLLSKAY--ERGYAD 125

Query: 129  V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            V  I   WL E    G+I+L+GG +G + +    +++   +  +  + + F D  Y+ L 
Sbjct: 126  VPYIDQQWLVE-HRAGVIVLSGGVNGDVGKKLLRSNTDELKSAVDFYHEFFPDHFYLTLT 184

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R  + +     ++LA   +LP+VATN+  FL  ED+EAH++ +A+     +    RP
Sbjct: 185  RTGRPDEEHYIQAALELAEREQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKRP 244

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  T   Y ++  EM  +F+D+P ALENT+ IA+RC+  +++    LP+F   +      
Sbjct: 245  KNYTSQQYFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGEYFLPKFPTGDL----- 299

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+ L  +A  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +
Sbjct: 300  STEDYLVKRAREGLEARLKVLFPDENERAARRAEYDERLQVELDVINQMGFPGYFLIVME 359

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 360  FIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 419

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P D
Sbjct: 420  CMDGRDRVIEHVAEMYGRGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPPD 479

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   ++ +A   + + +E   AD  V  ++++++KLEG+ R+A  HA G+VI    ++  
Sbjct: 480  PGMTLA-KAFEAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITDF 538

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
             P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R  K     VD
Sbjct: 539  SPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKPLVD 598

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DDH+++ +L    T  +FQLES GM+  ++ ++PDC EDIIALV+L+RPGP+ +
Sbjct: 599  INTIPLDDHQSFEVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQS 658

Query: 658  IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  A
Sbjct: 659  GMVDNFIDRKHGREEVSYPDANYQHETLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGA 718

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  F  GA KNGI   +++ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 719  DLLRRAMGKKKPEEMAKQRSVFEEGAIKNGIDGDLSMKIFDLVEKFAGYGFNKSHSAAYA 778

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+K HYP EF+AA MT EMDN +KI     +  +  ++++PP +NT    F V
Sbjct: 779  LVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECMRMGLKVVPPDINTGKHHFSV 838

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             +N  I Y + AIKGVG      ++EA   D  F +L D C+RVD KK+NRR  ESL+ +
Sbjct: 839  NENGEIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIKS 898

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN- 947
            GA D  G  R  L Q+L++  + +    K+      ++F    G  ++     + S  N 
Sbjct: 899  GAFDKLGPHRAALQQNLEDALRASDQHAKDEALGQTDMF----GVLTETNEEVEHSYANI 954

Query: 948  ----SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                     + E+  LG Y S HP+  Y   L        +E     RG     + +VV+
Sbjct: 955  APWTEKTILDGERETLGLYLSSHPVSRYLKELSHYSPMRLKELTPNYRGQMSTASGLVVN 1014

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T+KG+ IG  T  + +   +   F
Sbjct: 1015 TRIAVTKKGNHIGIATIDDRSGRLDLTLF 1043


>gi|254513858|ref|ZP_05125919.1| putative DNA polymerase IIIalpha subunit subfamily [gamma
            proteobacterium NOR5-3]
 gi|219676101|gb|EED32466.1| putative DNA polymerase IIIalpha subunit subfamily [gamma
            proteobacterium NOR5-3]
          Length = 1168

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1029 (40%), Positives = 616/1029 (59%), Gaps = 45/1029 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS YSL +G + + ++  ++A  + PA+A+TD  N +  ++F + A +AG++PI
Sbjct: 4    FVHLRVHSEYSLKDGLVRIKSLAARVAELEMPAVAVTDVCNFYGLIKFHKAAVSAGVKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G   D+ + D+LK  +     +P    + LLV   EGY  L  L+SR Y   Q     R
Sbjct: 64   FGA--DVWVTDSLKSDD----AYP----LCLLVMNPEGYLNLTRLLSRAYREGQTLDGPR 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            +   WL E G EGL+ L+ G++G + +A       +A +R+     +F  R Y+ L R  
Sbjct: 114  VLWEWLSEAG-EGLLALSCGAAGEVGQALVNEKMDLARQRMERCLAVFPGRFYLELHRTG 172

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  D       + LA     P+VATN+  F+   ++EAH+  + +A S V+    R R  
Sbjct: 173  RVGDEEHVHAALDLATQFNCPVVATNDVRFIDASEFEAHEARVCIAESRVLDDPRRQRRY 232

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            + + YL++  EM  +F D+PEALENT+ IARRCS  +++    LP +   +   +    +
Sbjct: 233  SQEQYLRSSEEMQELFEDIPEALENTLAIARRCSMEMELGRVCLPEYPVPDGMTM----D 288

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFLIVADFI 364
               R  A  GL+ RL    I +  +AQ    +YR+RLDFEL+ I  M F GYFLIV DFI
Sbjct: 289  TFFRESAHRGLDERLQTLQIHRRENAQALEREYRERLDFELDTIIAMGFPGYFLIVMDFI 348

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK++ IPVGPGRGSGAGS+ AY+L+ITD+DP+ + LLFERFLNP+R+SMPDFD+DFC 
Sbjct: 349  RWAKEHGIPVGPGRGSGAGSLVAYSLSITDLDPIEYELLFERFLNPERVSMPDFDVDFCM 408

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDEVI YV + YG E V+QIITFG+L AKA +RDV R     Y   DRL K+IP +  
Sbjct: 409  ERRDEVIDYVADLYGREAVSQIITFGTLAAKAVVRDVARVQGKSYGLGDRLSKMIPFEVG 468

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +AI  +   ++    D     + +++ +LEG+ R+   HA G+VI    L+    
Sbjct: 469  MTLQ-KAIEQEESLQQFLRDDGEAQEIWDMAVQLEGITRNVGKHAGGVVIAPSELTDFSA 527

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLS 599
            +Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +   + +   +     +D++
Sbjct: 528  LYCDGEGAGLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWAQGMINEIRARQDEPPLDIN 587

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DDH ++ LL +  T  +FQLES GM++ +  ++PDC EDIIALV+LYRPGP+ + +
Sbjct: 588  QIPLDDHASFELLRSAETTAVFQLESRGMKELIARLRPDCFEDIIALVALYRPGPLQSGM 647

Query: 660  VYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            V N  +RK+G+EK+        H L+ P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+
Sbjct: 648  VDNFIDRKHGREKVSYPDAEYQHELLKPVLEPTYGIILYQEQVMQIAQILAGYTLGGADL 707

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  EEM KQ+  F +GA+  G+   +A  +F+L+ KFA YGFNKSH+AAYA++
Sbjct: 708  LRRAMGKKKPEEMAKQRSVFAAGAAAKGVDADLATKLFDLVEKFAGYGFNKSHSAAYALV 767

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQTAW+K+HYP  F+AA M+ E+DN +KI  F ++ R+  + +  P VN     F V +
Sbjct: 768  SYQTAWLKSHYPAAFMAAVMSSELDNTDKIVVFIEECRRMGLTVRLPDVNEGRYMFTVSE 827

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I Y L AIKG+G      ++E+  +  PF  L DFC+R D +KLNR+ LE+LV +GA
Sbjct: 828  AGEIVYGLGAIKGLGEGPVSGLLESREEHGPFHDLFDFCARTDPRKLNRKALEALVRSGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITLEKFS 944
             D  G  R  LL  +D+  + A+    NR     ++F      + E+G       L    
Sbjct: 888  FDSLGTDRWILLAGIDDALRAAEQNAANRDAGMVDLFGETVQASREQG--DPYAELRHIR 945

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                  R + E+  LG Y +GHP+D  +  +R+   +   +     RG N R+A +++S 
Sbjct: 946  PWTDRERLQGERDTLGLYVTGHPIDSCEDEIRRFVPQRLADLRPDNRG-NCRVAGLILSM 1004

Query: 1005 QQKKTRKGS 1013
            +  K+ +GS
Sbjct: 1005 RAMKSARGS 1013


>gi|320540046|ref|ZP_08039702.1| putative DNA polymerase III alpha subunit [Serratia symbiotica str.
            Tucson]
 gi|320029895|gb|EFW11918.1| putative DNA polymerase III alpha subunit [Serratia symbiotica str.
            Tucson]
          Length = 1162

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1051 (41%), Positives = 620/1051 (58%), Gaps = 48/1051 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A   GI+
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGVGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG  L +          Q       +  + +L + + GYQ L  L+SR Y    G   
Sbjct: 64   PIIGADLHV----------QSDVLGDELAQLTVLATNSAGYQNLTLLISRAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGL++L+G   G + +     +    E+ L  +++ F D  Y+ L R
Sbjct: 114  PIIDRDWLIE-HREGLLLLSGARHGDVGKFLLRGNQPQVEQCLDFYQQYFPDCYYLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V LA    LP+VATN+  FL E+D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEENYLHAAVTLATERGLPVVATNDVRFLEEDDFDAHEIRVAIHEGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F      D+  E
Sbjct: 233  NYSPQQYMRSEDDMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQF---PTGDMTTE 289

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363
            +   L++K   GLE RL          AQ   +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 290  DFLVLKSKE--GLEERLTFLFPDPEVRAQRRPEYDERLDVELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNHVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDLVIDHVSEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TL+++  +L+ +  R  K     +D+
Sbjct: 527  PLYCDAEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLSIIDWALEMINARCAKSGEPPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLNDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   GI   ++V IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKNPVEMAKQRGGFEDGAKLRGIDGELSVKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYRFHVN 826

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSKKLNRRVLESLVF 887
             +  I Y + AIKGVG      I+EA        F  L D C+R D KKLNRR+LE L+ 
Sbjct: 827  NEGEIVYGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIM 886

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            +GALD  G  R  L+ SL +  K A    K       ++F    G  S+     + S  N
Sbjct: 887  SGALDRLGPHRAALMNSLGDALKAADQHAKAEAIGQVDMF----GVLSEAPEQVEQSYAN 942

Query: 948  -----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                   V  + E+  LG Y +GHP+  Y K I R  G +  ++   T RG       +V
Sbjct: 943  VPRWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLV 1002

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V+ +   T++G+RIG  T  + +   E   F
Sbjct: 1003 VAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1033


>gi|71892068|ref|YP_277798.1| DNA polymerase III, alpha chain [Candidatus Blochmannia
            pennsylvanicus str. BPEN]
 gi|71796174|gb|AAZ40925.1| DNA polymerase III, alpha chain [Candidatus Blochmannia
            pennsylvanicus str. BPEN]
          Length = 1163

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1049 (40%), Positives = 634/1049 (60%), Gaps = 43/1049 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL VHS YS+++G  ++N ++ K A  + PA+A+TD NNLF  ++F   A  +GI+
Sbjct: 4    PRFIHLHVHSDYSMIDGLATVNKLITKAAYLKMPALALTDFNNLFGFIKFYDVAYKSGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIG   D  +QD L M N+        PS +  LV+  +GY  LI L+S+ Y       
Sbjct: 64   PIIGA--DFLVQD-LIMDNK--------PSKLTCLVTDKQGYYHLIMLISKAYKNKCNNV 112

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            ++ I   WL+E   +GLI+L+GG +G I R    N     E+ L  + K F +R Y+ L 
Sbjct: 113  ALMIQRHWLKEY-NKGLILLSGGRNGDIGRYLLRNEKSKIEQCLYFYSKYFPNRYYLELI 171

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R ++       ++L+    LP+VATN+  F++E+D+ AH+V +A+   T ++   + 
Sbjct: 172  RTGRQHEESYLQLAIELSIAKGLPVVATNDVRFINEKDFLAHEVRVAIYAGTTLNNVQQL 231

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  +   ++K+  EM  +FSD+PE+L N+VEIA RC+F + +    LP+F    C    K
Sbjct: 232  RKYSSQQFMKSEQEMCELFSDVPESLVNSVEIAYRCNFTIDLGGYFLPQF-PTGC----K 286

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   A  GLE RL         +    + Y  RL  EL VI  M F  YFLIV +
Sbjct: 287  SAKDFLTTHAKKGLEERLILLFPKTKERLVQRKPYDLRLKNELQVINNMNFPSYFLIVME 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK N+IPVGPGRGSGA S+ AY L IT++DPL+F LLFERFLNP+R+SMPD DIDF
Sbjct: 347  FIKWAKNNDIPVGPGRGSGASSLVAYVLKITELDPLQFDLLFERFLNPERISMPDLDIDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY+ ++R+ KLIP +
Sbjct: 407  CMDHRDLVIEHVSKTYGSEAVSQIITFGTMAAKAVIRDVGRVLGHPYALINRIAKLIPLE 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A + + + +     D  +  L++++ +LEG+ R+ S HA G+VI    ++  
Sbjct: 467  SGITLK-KAFSIEPQLKLLYENDEDITELIDMALQLEGIVRNVSKHAGGVVIAPIKITDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
             P+Y D  S  P+TQF+   IE+ GLIKFDFLGL+TLT++  +L  +    +K     +D
Sbjct: 526  SPLYYDNDSIHPMTQFDKDDIERIGLIKFDFLGLRTLTIINHALKMINNTRLKQGLTIID 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  I   D +++H+L +  T  IFQLES G+++ ++ ++PDC ED+IAL++L+RPGP+ +
Sbjct: 586  IHSISLHDQKSFHVLQSSETTAIFQLESRGIKELIKRLKPDCFEDLIALIALFRPGPLQS 645

Query: 658  IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N  NRK+G E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L +A
Sbjct: 646  GMVDNFINRKHGYETISYPDAKWQHESLRPVLESTYGIILYQEQVMQIAQVLAGYTLGQA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRA+GKK  E+M KQ+  F  GA+KNGI  T+++ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DILRRAIGKKKPEDMAKQRSFFNLGAAKNGIDNTLSMKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +ISYQT W+KTHYP EF+AA+++ +MDN+ K+     + ++  + I PP++NT    F V
Sbjct: 766  LISYQTLWLKTHYPAEFMAAALSSDMDNLNKVVYLIGECQKMKLIISPPNINTSQYHFYV 825

Query: 831  GDNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              N+ I Y   AIKG+G T+   I+ + +    F  L DFC R+DS K+N R++E L+ +
Sbjct: 826  NANKEIVYGFGAIKGIGKTSIESIITSRNKGGNFKELFDFCIRIDSTKINHRMIEKLILS 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSV 945
            GA D FG  R +L+ SL+++ K A    KN+ +K  +IF     E  T +     +    
Sbjct: 886  GACDSFGIHRSKLMASLNDVLKRANQHIKNKYSKQTDIFEMRLDESNTIAISDRDDNTPQ 945

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVS 1003
             ++ +  E E+  LG Y + HP   Y   +++    I   ++ +       + +  ++VS
Sbjct: 946  WSNQLLLEKEKEALGLYLTSHPTIQYIKTIKRCASNIVNIKDVLLETDNKILHIFGLIVS 1005

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + K ++KG R+ +    + +   E   F
Sbjct: 1006 IRTKLSKKGKRVVFFILEDYSGRLEIMIF 1034


>gi|83644688|ref|YP_433123.1| DNA polymerase III subunit alpha [Hahella chejuensis KCTC 2396]
 gi|83632731|gb|ABC28698.1| DNA polymerase III, alpha subunit [Hahella chejuensis KCTC 2396]
          Length = 1158

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1049 (39%), Positives = 621/1049 (59%), Gaps = 50/1049 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL++H+ +SL++G + +  ++ K+A    PA+A+TD +N+   +++ + A  AG++PI
Sbjct: 4    FIHLRIHTEFSLVDGLVKVKPLVKKLADMGMPAVAVTDQSNMCCLVKYYKAASGAGVKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +G  + ++  D+           P  P  + L      GY+ L EL+SR +   Q     
Sbjct: 64   VGADVWVENLDD-----------PLAPFRLTLFARNETGYRNLTELISRGFTEGQSHGRA 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             +   W+     EGL+ L+G   G + +A      ++A +RL  + ++F D  Y+ LQR 
Sbjct: 113  IMKKDWIA-AQAEGLLALSGSKYGDVGQALLAGKQELARERLGVWMEMFPDAYYLELQRT 171

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  D       V+LA     P+VATN+  FL  +D+EAH+  + +     +    R R 
Sbjct: 172  GRINDEECVHASVELALETGCPVVATNDVHFLERDDFEAHEARVCIHEGRTLDDPRRERR 231

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + + YLK   EM  +FSD+PEA+ NTVEIA+RC+  L++    LP +   E   I    
Sbjct: 232  FSEEQYLKTAEEMCELFSDIPEAIANTVEIAKRCNVSLRLGKYFLPNYPIPEGMTI---- 287

Query: 308  ENELRNK-AVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             +E   K +  GLE RLA    Q     G   Q Y  RL FEL++I +M F GYFLIV D
Sbjct: 288  -DEFFIKVSEEGLEERLATLLKQDDPEYGNKRQSYYDRLKFELDIITQMGFPGYFLIVMD 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FIKWAKNNGVPVGPGRGSGAGSLVAYALKITDLDPLAYDLLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI YV   YG   V+QIITFG++ AKA +RDV R    PYS  DRL KLIP +
Sbjct: 407  CMEGRDRVIAYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGRPYSMGDRLSKLIPFE 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                ++ +A   +   RE    D     + E+++KLEG+ R+   HA G+VI    L+  
Sbjct: 467  VGMTLA-KAYEQEEPLREYLTTDEDAAEIWEMARKLEGVTRNVGKHAGGVVIAPTKLTDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRG-VKVD 597
             P+Y D      VTQF+   +E+AGL+KFDFLGL+TLT++  ++D +    A++G   +D
Sbjct: 526  APLYCDETGSGLVTQFDKDDVEQAGLVKFDFLGLRTLTIVDWAVDIINRQHAEKGQPPLD 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  T++LL    T  +FQLES GM++ +  + PDC EDIIALV+L+RPGP+ +
Sbjct: 586  INFIPLDDAPTFNLLKHGETTAVFQLESRGMKELIRRLMPDCFEDIIALVALFRPGPLQS 645

Query: 658  IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   HP      + P+L+ T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 646  GMVDDFINRKHGRAELAYPHPDYQLESLKPVLQPTYGIILYQEQVMQIAQVMAGYTLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQK  F+ G+   G+ + +A  IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DLLRRAMGKKKPEEMAKQKAIFVEGSINQGLEQDLAEKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+K HYP  F+AA +T +M N +K+    ++ R+  ++++ P VN     F V
Sbjct: 766  LVSYQTAWLKCHYPAPFMAAVLTADMQNTDKVVTLVEECRRMKLELVLPDVNNSSYTFTV 825

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D +RI Y L A+KG+G    + I++A  +  PF  L DFC RVD +++N+R LE+LV +
Sbjct: 826  DDKHRIVYGLGAVKGLGEGPVQSILDARKEGGPFRDLFDFCQRVDLRRVNKRALEALVRS 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-----EKGTFSDKITLEKF 943
            GA+D  G SR +++ S++   + A    +N      ++F       +   +S    ++++
Sbjct: 886  GAMDKLGPSRARMMASINEAVRRADQHSRNEDAGMLDLFGEVVPETDPNPYSATEGMQEW 945

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
            S      R + E+  LG Y +GHP D Y+  +R+       E        N+  A +VV+
Sbjct: 946  S---DKERLKLEKETLGLYLTGHPFDEYEQEVRRFVRTPISELRPGKSPQNV--AGLVVA 1000

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +  K+++G  IG+ T  + +   E  FF
Sbjct: 1001 VRTMKSKRGGYIGFATLDDRSGRIEVTFF 1029


>gi|32035303|ref|ZP_00135310.1| COG0587: DNA polymerase III, alpha subunit [Actinobacillus
            pleuropneumoniae serovar 1 str. 4074]
 gi|126208577|ref|YP_001053802.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            L20]
 gi|307263773|ref|ZP_07545379.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 13 str. N273]
 gi|126097369|gb|ABN74197.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 5b str. L20]
 gi|306870894|gb|EFN02632.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 13 str. N273]
          Length = 1158

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1059 (40%), Positives = 623/1059 (58%), Gaps = 72/1059 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  +A  +G++PI
Sbjct: 6    FVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKPI 65

Query: 71   IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IG  + +    D +D  ++T              LL     GY  +  L+S+ Y   QG 
Sbjct: 66   IGADIFVRPEPDSEDFFELT--------------LLAKNNTGYHNITLLLSKAY--QQGY 109

Query: 127  QSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                +   +WL E+  EG+I+L+GG +G + +A    +   A++ +  +++ F +  Y+ 
Sbjct: 110  VEFPLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENQAEADELVGFYQQYFPNHYYLA 168

Query: 186  LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  +    
Sbjct: 169  LCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPK 228

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP+  +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++    LP F   +    
Sbjct: 229  RPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTGDL--- 285

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLIV
Sbjct: 286  --STEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIV 343

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 344  MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 403

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KLIP
Sbjct: 404  DFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIP 463

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 464  PDPGMTLA-KAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAIT 522

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR  +     
Sbjct: 523  DFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEP 582

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+
Sbjct: 583  VRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPL 642

Query: 656  DNIVVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ++ +V N  +RK+G E++          S+ P++DP    T GVI+YQEQVMQIAQ+L+G
Sbjct: 643  ESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDP----TYGVIVYQEQVMQIAQVLAG 698

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            Y+L  AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNKS
Sbjct: 699  YTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKS 758

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+ 
Sbjct: 759  HSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSG 818

Query: 825  CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVL 882
               F V +   I Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR  
Sbjct: 819  KHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTF 878

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E L+ +GA D  G  R  L+++L++  K         +++H  + A  +      +T   
Sbjct: 879  EGLIMSGAFDKLGPHRAALMKNLEDALK--------ASDQHSKMEALGQSDMFGVLTETP 930

Query: 943  FSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
              V+N+             E E+  LG Y SGHP+  +   L         E   T RG 
Sbjct: 931  EEVQNAYANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQ 990

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +A +++  +   T++GSR+G  T  + + + +   F
Sbjct: 991  VVTVAGIIMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|307261584|ref|ZP_07543252.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 12 str. 1096]
 gi|306868707|gb|EFN00516.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 12 str. 1096]
          Length = 1158

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1059 (40%), Positives = 623/1059 (58%), Gaps = 72/1059 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  +A  +G++PI
Sbjct: 6    FVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKPI 65

Query: 71   IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IG  + +    D +D  ++T              LL     GY  +  L+S+ Y   QG 
Sbjct: 66   IGADIFVRPEPDSEDFFELT--------------LLAKNNTGYHNITLLLSKAY--QQGY 109

Query: 127  QSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                +   +WL E+  EG+I+L+GG +G + +A    +   A++ +  +++ F +  Y+ 
Sbjct: 110  VEFPLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENEAEADELVGFYQQYFPNHYYLA 168

Query: 186  LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  +    
Sbjct: 169  LCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPK 228

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP+  +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++    LP F   +    
Sbjct: 229  RPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTGDL--- 285

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLIV
Sbjct: 286  --STEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIV 343

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 344  MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 403

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KLIP
Sbjct: 404  DFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIP 463

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 464  PDPGMTLA-KAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAIT 522

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR  +     
Sbjct: 523  DFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEP 582

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+
Sbjct: 583  VRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPL 642

Query: 656  DNIVVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ++ +V N  +RK+G E++          S+ P++DP    T GVI+YQEQVMQIAQ+L+G
Sbjct: 643  ESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDP----TYGVIVYQEQVMQIAQVLAG 698

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            Y+L  AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNKS
Sbjct: 699  YTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKS 758

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+ 
Sbjct: 759  HSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSG 818

Query: 825  CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVL 882
               F V +   I Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR  
Sbjct: 819  KHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTF 878

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E L+ +GA D  G  R  L+++L++  K         +++H  + A  +      +T   
Sbjct: 879  EGLIMSGAFDKLGPHRAALMKNLEDALK--------ASDQHSKMEALGQSDMFGVLTETP 930

Query: 943  FSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
              V+N+             E E+  LG Y SGHP+  +   L         E   T RG 
Sbjct: 931  EEVQNAYANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQ 990

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +A +++  +   T++GSR+G  T  + + + +   F
Sbjct: 991  VVTVAGIIMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|254468287|ref|ZP_05081693.1| DNA polymerase III, alpha subunit [beta proteobacterium KB13]
 gi|207087097|gb|EDZ64380.1| DNA polymerase III, alpha subunit [beta proteobacterium KB13]
          Length = 1156

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1032 (41%), Positives = 629/1032 (60%), Gaps = 46/1032 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+ HS YS+ +G + L + +      +  ++AI+D +N+F+A++F + A + GI+PI
Sbjct: 9    FIHLRCHSEYSITDGIVRLGDYVSLAKELELESLAISDLSNIFAAVKFFKLATSNGIKPI 68

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + I   DN    ++          ++L+    +GY  L +L+SR Y  +Q +    
Sbjct: 69   IGADVYIQNDDNRDQPSR----------LLLICQNKQGYLNLSKLLSRAYTENQYRDRPE 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL      GLI L+G + G I +         A       K+ F DR Y+ +QR+ 
Sbjct: 119  IKFEWLFSDFNHGLICLSGFNFGAIGQNLLSQKKDKAIHIAKQLKEAFDDRFYLEVQRYE 178

Query: 191  GYDRYRESQ-----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
               +  E +     + QL Y  ++PLVAT    F+ +ED++AH+    +A   V+  + R
Sbjct: 179  VEKKVEEQENLVLAIAQLGYDLDIPLVATQPIQFIKKEDFQAHEAKTCIADGYVLGDQRR 238

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  T + Y K  +EM  +F D+P A+ NT+EI++RC+F  ++    LP F   E   + 
Sbjct: 239  PKNFTAEQYFKTPAEMAVLFEDIPSAISNTLEISKRCNFEFELGNVFLPDFPIPEGLTVN 298

Query: 305  KEEENELRNKAVAGLEVRLAQ-GAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVA 361
            +     L N A+ GLE +L       K +  Q+  Y  RL FE+NVI +M ++GYFLIVA
Sbjct: 299  EY----LENTAIEGLEKKLKNLYPEVKDFKTQEKKYLDRLHFEINVINQMGYAGYFLIVA 354

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK+NN+PVGPGRGSGAGSV A+AL ITD+DPL ++LLFERFLNP+R+SMPDFDID
Sbjct: 355  DFINWAKENNVPVGPGRGSGAGSVVAFALGITDLDPLSYNLLFERFLNPERVSMPDFDID 414

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ+ RD VI YV+ +YG++ V+QI+TFG++ A+A +RDVGR L +P+  VD + KLIP 
Sbjct: 415  FCQEGRDRVIEYVKERYGYDAVSQIVTFGTMAARAVIRDVGRVLDLPFPFVDGIAKLIPM 474

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +    +SL+ AI  + + ++    +  V  L +++ KLEGL R+   HA G++I    +S
Sbjct: 475  ELG--ISLKDAIEKEEQIQQRIKNEEEVKELFDLALKLEGLVRNVGMHAGGVLIAPGKIS 532

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD----FLAQRG-VK 595
               P+Y     +  V+QF+   +E  GLIKFDFLGL+TLT+L  +L+      A  G   
Sbjct: 533  DYSPLYCQEGGEGMVSQFDKDDVESIGLIKFDFLGLRTLTILSMALNNANKMRATEGKPP 592

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            + L  IP DD ET+  L+   T  +FQLES GM+  L+  +PDC EDIIALV+LYRPGP+
Sbjct: 593  IYLDDIPLDDEETFEWLSNANTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYRPGPM 652

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G++ +   HP  + +LKET G+ +YQEQVMQIAQ ++GY+L  AD+LRR
Sbjct: 653  DLIPDFCKRKHGQQLVSYPHPSTEGILKETYGIAVYQEQVMQIAQTVAGYTLGGADLLRR 712

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEMD Q+E FI GA++NG+ K  A N+F+LL KFA YGFNKSHAAAYA I+YQ
Sbjct: 713  AMGKKKVEEMDAQREVFIQGATQNGLEKQQASNLFDLLEKFAGYGFNKSHAAAYAKIAYQ 772

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNR 834
            TA++K HY   F+AASM+ +M+N + I     D     I+++PPS+N     F+ + D  
Sbjct: 773  TAYLKRHYTSSFIAASMSADMNNTDNIALLFDDCVLNKIKLLPPSINNSVFRFQPLNDKE 832

Query: 835  IYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L AIKG G      I+E  +++ P+ SL +FC+R+D +K+NR+V+ESL+ AGA D 
Sbjct: 833  ILYGLGAIKGTGLAAIEVILEDRNSNGPYQSLFEFCARLDLRKVNRKVIESLIRAGAFDE 892

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL S++     A+  + +     +++F  E    + ++T    + E  S R  
Sbjct: 893  LEKNRASLLASINQAISLAEQSKSHMG--QDSLFGEEA---NKEVTNYVATDEWDSKRQI 947

Query: 954  NEQRV-LGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTR 1010
             E++V LGFY+SGHP   YK ++R M    Y +S+   R   NN  L+ +V++ + + T+
Sbjct: 948  YEEKVALGFYYSGHPFSHYKEMVRAM----YPQSLRDARPSNNNQWLSGVVMAARNRMTQ 1003

Query: 1011 KGSRIGWVTFSE 1022
            +G +I  VT  +
Sbjct: 1004 RG-KIAIVTLDD 1014


>gi|91792926|ref|YP_562577.1| DNA polymerase III subunit alpha [Shewanella denitrificans OS217]
 gi|91714928|gb|ABE54854.1| DNA polymerase III, alpha subunit [Shewanella denitrificans OS217]
          Length = 1159

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1043 (39%), Positives = 615/1043 (58%), Gaps = 36/1043 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G   +  IL +       AIA+TD NN    ++F      AGI+
Sbjct: 4    PRFVHLRVHSDFSMTDGVAKVKPILAEAERQGMAAIALTDQNNFCGLVKFYGGCHNAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G    + +    K           + ++ ++     GYQ L +++S+ YL  Q    
Sbjct: 64   PIVGADFWMQVPGFDK----------ELCALTIIAMDNHGYQNLTQIISQAYLRGQINGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            V I   WL     +G+++L+G   G + +A    +    +  +  ++  F  R ++ L R
Sbjct: 114  VVIDQDWLVTY-NQGILVLSGAKEGDVGKALLKGNLPQVDSLIQFYQTHFDGRYFLELIR 172

Query: 189  HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D  R   + V LA   +LP+VATN  +FL  +D+E+H++ +A++    ++   RP+
Sbjct: 173  TGRSDEERYLHMAVNLAKERDLPVVATNQVVFLKADDFESHEIRVAISDGYTLADPRRPK 232

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              + + YL++  EM ++FSD+P AL N+VEIA+RC+  ++++   LP F   +       
Sbjct: 233  TYSAEQYLRSEEEMCALFSDIPSALSNSVEIAKRCNVTIRLYEYFLPNFPTGDL-----S 287

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L   +  GLE RL      +   AQ   +Y +RL  EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVVVSEKGLEERLEFLFPDEQVRAQRRGEYDERLAIELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRRDEVI +V + YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP +P
Sbjct: 408  MDRRDEVIDHVADLYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPAEP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   +   +E+   D  V  L+++ ++LEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEVEPALQESYDGDEDVKELIDMCRRLEGVTRNAGKHAGGVVIAPTKITDFS 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +     Q G+  + +
Sbjct: 527  PLYCDAEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVQLQNGLDPIRI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD + + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  EAIPLDDPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N   RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIERKHGREEVSYPDAQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA  NGI   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRGTFKEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     F V 
Sbjct: 767  VSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFTVD 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            +   I Y + AIKGVG      I+EA  + PF  L DFC+RVD KKLN+R++E L+ AGA
Sbjct: 827  EAFNIVYGIGAIKGVGEGPVESILEARVNGPFTDLFDFCARVDLKKLNKRIIEKLICAGA 886

Query: 891  LDCFGYSRMQLLQSLDN-IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            LD  G  R  ++ +L   I   AQ  +     +H+           +K    +       
Sbjct: 887  LDSLGPHRASMMATLPQAISAAAQHAKAEAIGQHDMFGLLNSEPEDNKQQFVECMPWPDK 946

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
            +  E E+  LG Y +GHP++ Y   L++      ++   T RG   + A +VV+ +   T
Sbjct: 947  IWLEGERDTLGLYLTGHPINQYLKELKQYTSGRLKDVHPTERGKTAKAAGLVVATRVMLT 1006

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
            ++G+++G VT  + +   E   F
Sbjct: 1007 KRGAKMGLVTLDDKSARLEVMLF 1029


>gi|307246021|ref|ZP_07528103.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 1 str. 4074]
 gi|307255002|ref|ZP_07536820.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 9 str. CVJ13261]
 gi|307259438|ref|ZP_07541163.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 11 str. 56153]
 gi|306852956|gb|EFM85179.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 1 str. 4074]
 gi|306861875|gb|EFM93851.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 9 str. CVJ13261]
 gi|306866374|gb|EFM98237.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 11 str. 56153]
          Length = 1158

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1059 (40%), Positives = 623/1059 (58%), Gaps = 72/1059 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  +A  +G++PI
Sbjct: 6    FVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKPI 65

Query: 71   IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IG  + +    D +D  ++T              LL     GY  +  L+S+ Y   QG 
Sbjct: 66   IGADIFVRPEPDSEDFFELT--------------LLAKNNTGYHNITLLLSKAY--QQGY 109

Query: 127  QSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                +   +WL E+  EG+I+L+GG +G + +A    +   A++ +  +++ F +  Y+ 
Sbjct: 110  VEFPLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENEAEADELVGFYQQYFPNHYYLA 168

Query: 186  LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  +    
Sbjct: 169  LCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPK 228

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP+  +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++    LP F   +    
Sbjct: 229  RPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTGDLS-- 286

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLIV
Sbjct: 287  ---TEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIV 343

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 344  MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 403

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KLIP
Sbjct: 404  DFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIP 463

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 464  PDPGMTLA-KAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAIT 522

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR  +     
Sbjct: 523  DFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEP 582

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+
Sbjct: 583  VRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPL 642

Query: 656  DNIVVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ++ +V N  +RK+G E++          S+ P++DP    T GVI+YQEQVMQIAQ+L+G
Sbjct: 643  ESGMVQNFIDRKHGHEEVSYPDAQYQHESLKPILDP----TYGVIVYQEQVMQIAQVLAG 698

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            Y+L  AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNKS
Sbjct: 699  YTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKS 758

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+ 
Sbjct: 759  HSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSG 818

Query: 825  CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVL 882
               F V +   I Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR  
Sbjct: 819  KHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTF 878

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E L+ +GA D  G  R  L+++L++  K         +++H  + A  +      +T   
Sbjct: 879  EGLIMSGAFDKLGPHRAALMKNLEDALK--------ASDQHSKMEALGQSDMFGVLTETP 930

Query: 943  FSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
              V+N+             E E+  LG Y SGHP+  +   L         E   T RG 
Sbjct: 931  EEVQNAYANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQ 990

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +A +++  +   T++GSR+G  T  + + + +   F
Sbjct: 991  VVTVAGIIMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|190150430|ref|YP_001968955.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 7 str. AP76]
 gi|189915561|gb|ACE61813.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 7 str. AP76]
          Length = 1201

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1055 (40%), Positives = 621/1055 (58%), Gaps = 64/1055 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  +A  +G++PI
Sbjct: 49   FVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKPI 108

Query: 71   IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IG  + +    D +D  ++T              LL     GY  +  L+S+ Y   QG 
Sbjct: 109  IGADIFVRPEPDSEDFFELT--------------LLAKNNTGYHNITLLLSKAY--QQGY 152

Query: 127  QSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                +   +WL E+  EG+I+L+GG +G + +A    +   A++ +  +++ F +  Y+ 
Sbjct: 153  VEFPLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENQAEADELVGFYQQYFPNHYYLA 211

Query: 186  LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  +    
Sbjct: 212  LCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPK 271

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP+  +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++    LP F   +    
Sbjct: 272  RPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTGDLS-- 329

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLIV
Sbjct: 330  ---TEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIV 386

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 387  MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 446

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KLIP
Sbjct: 447  DFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIP 506

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 507  PDPGMTLA-KAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAIT 565

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR  +     
Sbjct: 566  DFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEP 625

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+
Sbjct: 626  VRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPL 685

Query: 656  DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            ++ +V N  +RK+G E++        H  + P+L  T GVI+YQEQVMQIAQ+L+GY+L 
Sbjct: 686  ESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTLG 745

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 746  GADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSAA 805

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+    F
Sbjct: 806  YALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHRF 865

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V +   I Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR  E L+
Sbjct: 866  SVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGLI 925

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             +GA D  G  R  L+++L++  K         +++H  + A  +      +T     V+
Sbjct: 926  MSGAFDKLGPHRAALMKNLEDALK--------ASDQHSKMEALGQSDMFGVLTETPEEVQ 977

Query: 947  NSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
            N+             E E+  LG Y SGHP+  +   L         E   T RG  + +
Sbjct: 978  NAYANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTV 1037

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A +++  +   T++GSR+G  T  + + + +   F
Sbjct: 1038 AGIIMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1072


>gi|156975491|ref|YP_001446398.1| DNA polymerase III subunit alpha [Vibrio harveyi ATCC BAA-1116]
 gi|156527085|gb|ABU72171.1| hypothetical protein VIBHAR_03222 [Vibrio harveyi ATCC BAA-1116]
          Length = 1143

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1039 (40%), Positives = 617/1039 (59%), Gaps = 53/1039 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G   +  ++ K+A    PA+A+TD  NL   +++   A  +G++PIIG   D  MQ 
Sbjct: 1    MVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGTAHGSGVKPIIGA--DFKMQS 58

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            +      G+     +  + LL +  EGY+ L  L+S+ YL    +    +  +WL E+ +
Sbjct: 59   D----EFGEE----LTQLTLLAANNEGYKNLTLLISKAYLRGHVQHQPVLDKAWLAEL-S 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-V 200
            EGLI+L+G  +G I +A    + +V +  +  + + F DR Y+ L R    D        
Sbjct: 110  EGLIVLSGAKNGEIGKALLKGNRKVVDSCVEFYNQYFPDRFYLELVRTGRPDEETYLHFA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            ++LA   ELP+VATN  +F+SE+ ++AH++ +A+     +    RP+  +P+ YL+   E
Sbjct: 170  IELAEELELPVVATNEVVFISEDLFDAHEIRVAIHDGYTLEDPRRPKNYSPEQYLRTEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       EE + L  K+  GL
Sbjct: 230  MCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM-----EETDFLVMKSREGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y  RL  EL+VI +M F GYFLIV +FIQW+K N IPVGP
Sbjct: 285  EERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLE-KAFKAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
               E   AD  V  L+++ + LEG  R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  ALPELYDADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFAPIYADSEGHFPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L  +  R  +     V +  IP DD  ++ L
Sbjct: 524  QFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKDPVRIESIPLDDAASFRL 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
             I          S+  ++DP    T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK
Sbjct: 644  AISYPDEKWQHESLKEILDP----TYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 699

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K
Sbjct: 700  KPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 759

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSL 839
             HYP EF+AA MT +MDN EK+     +  +  + ++PP +N     F V +N  I Y +
Sbjct: 760  MHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINAGLYRFNVDENGAIVYGI 819

Query: 840  AAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKGVG      I+EA +    F  L DFC+R+D KK+N+RV+E L++AGALD  G  R
Sbjct: 820  GAIKGVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHR 879

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----KITLEKFSVENSSVRFE 953
              L+ SL++  K A    +       ++F    G  +D     +    +       V  E
Sbjct: 880  AALMASLNDAVKAASQHHQAEAFGQTDMF----GVLTDAPEEVEHKYTQVPAWPEKVWLE 935

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ +   T++G+
Sbjct: 936  GERETLGLYLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGT 995

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            RIG +T  + +   E   F
Sbjct: 996  RIGIMTLDDRSGRMEVMLF 1014


>gi|229845787|ref|ZP_04465899.1| DNA polymerase III subunit alpha [Haemophilus influenzae 7P49H1]
 gi|229810791|gb|EEP46508.1| DNA polymerase III subunit alpha [Haemophilus influenzae 7P49H1]
          Length = 1159

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1057 (40%), Positives = 619/1057 (58%), Gaps = 56/1057 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +      K T  G   F     + LL    EGY+ +  L+S+ Y   +
Sbjct: 61   SGMKPIIGADVKV------KSTLCGDEYF----DLTLLAKNNEGYKNITLLLSKAY--QR 108

Query: 125  GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            G   +  I   WL E   EG+I+L+GG+ G I +     +    E  +  +++ F D  Y
Sbjct: 109  GYNDLPYIDQDWLIE-HREGVIILSGGTQGDIGKKLLKENVAEIESAVAFYQEFFADHFY 167

Query: 184  VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L R    D  R  Q  ++LA +H LPLVATN+ +FL  +D+EAH++ +A+     +  
Sbjct: 168  LALTRTGKPDEERYIQAALKLAKSHGLPLVATNDVMFLKSDDFEAHEIRVAIHDGYTLDD 227

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RP+  T   Y ++  EM  +F+D+P ALENT+ IA+RCS  L++    LP+F   +  
Sbjct: 228  PKRPKYYTSQQYFRSEDEMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L  K+  GLE RLA        +      Y +RL  EL+VI +M F GYFL
Sbjct: 287  ----STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 403  DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   ++ +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    
Sbjct: 463  IPPDPGMTLA-KAFEAEPQLQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTL 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594
            ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R V    
Sbjct: 522  ITDFSPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVRKGK 581

Query: 595  -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPG
Sbjct: 582  PRVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641

Query: 654  PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+
Sbjct: 642  PLQSGMVDNFIDRKHGREEVSYPDAEYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYT 701

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+
Sbjct: 702  LGGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N    
Sbjct: 762  AAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884
             F V +   I Y + AIKGVG      ++ A +    F  L D C+RVD KK+NRR  ES
Sbjct: 822  HFSVNEQGEIVYGIGAIKGVGEGPIEALVTARNKGGIFKDLFDLCARVDLKKINRRTFES 881

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ +GA D  G  R  L ++L++  + +    K+      ++F     T  D        
Sbjct: 882  LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHED-------- 933

Query: 945  VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
            VEN+             + E+  LG Y S HP+  Y   L        ++     RG   
Sbjct: 934  VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +A ++V+ +   T+KG+R+G  T  + +   +   F
Sbjct: 994  TVAGLLVASRIAITKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|126667580|ref|ZP_01738550.1| DNA polymerase III, alpha subunit [Marinobacter sp. ELB17]
 gi|126628006|gb|EAZ98633.1| DNA polymerase III, alpha subunit [Marinobacter sp. ELB17]
          Length = 1161

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1052 (40%), Positives = 630/1052 (59%), Gaps = 53/1052 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL++HS +SL++G + +  ++ ++     PA+ +T+ +N+FS + F + A  AG++P
Sbjct: 5    TFVHLRIHSEHSLVDGLVRVKPLIKRVVELGMPAVGLTEQSNMFSLVRFYKAALGAGVKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L  +  D      + ++PF T     LL S  +GY  L E+VS  Y   Q     
Sbjct: 65   IIGADLWFENPD------EPESPFRTT----LLASNNDGYLNLTEIVSLGYTEGQRFGKP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   WL E  ++GLIML+GG  G + +A   +  ++A +R   ++ L+    Y+ LQR 
Sbjct: 115  IIKREWL-EARSQGLIMLSGGKMGDVAKAMLSDKPKLARERACYWRDLYPGSFYLELQRT 173

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             R  D       V LA    LP+VATN+  F+  ED+EAH+  + +  S  +    R R 
Sbjct: 174  GRAGDEDCLHLNVALAAELGLPVVATNDVHFIYAEDFEAHEARVCIGESRTLDDPRRDRR 233

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  +L++  EM+ +F+D+PEA+ENT+ IARRCS  +++    LP +   E   +    
Sbjct: 234  FSDQQHLRSAEEMIELFADIPEAVENTLAIARRCSVTVRMGEYFLPNYPVPEGMTMN--- 290

Query: 308  ENELRNKAVAGLEVRLAQGAIAKG---YHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
             +  R  +  GLE RLA+  + K    Y +  Q Y  RL FEL++I +M F GYFLIV D
Sbjct: 291  -DYFRRVSEEGLEDRLAK-TLPKDDPDYDSKRQAYYDRLKFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK N +PVGPGRGSGAGS+ AYA  ITD+DPL++ LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIKWAKNNGVPVGPGRGSGAGSLVAYAQLITDLDPLQYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI YV  KYG E V+QIITFG++ AKA +RDV R     Y   D+L K+IP +
Sbjct: 409  CMEGRDRVIAYVAEKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                ++ +A+  +   +E    D     + E++ KLEG+ R+A  HA G+VI    ++  
Sbjct: 469  VGMTLA-KAVEQEPSLKEFLAQDEEAQEIWEMAIKLEGVCRNAGKHAGGVVIAPTKITDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VD 597
             P+Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +L  +     +RG+K +D
Sbjct: 528  SPLYCDDDGGSLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWALKMINPRREKRGLKPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +S IP DD  ++ +L    T  +FQLES GM+  +  +QPD +ED+IALV+L+RPGP+ +
Sbjct: 588  ISEIPLDDPASFVMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + +RK+GK+ +   HP      + P+L+ T GVI+YQEQVMQIAQ++ GYSL  A
Sbjct: 648  GMVDDFIDRKHGKQPMSFPHPDYQYEGLKPVLEPTYGVILYQEQVMQIAQVMGGYSLGNA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQK+ F+ G + N I K +A NIF+L+ KFA YGFNKSH+AAYA
Sbjct: 708  DMLRRAMGKKKPEEMAKQKQFFLDGCAGNNIDKALAENIFDLVEKFAGYGFNKSHSAAYA 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+K HY  EF+AA +T +M N +K+    ++ R   + ++ P V+T    F  
Sbjct: 768  LVSYQTLWLKAHYTAEFMAAVLTADMQNTDKVVTLVEECRSLKLDLVLPDVSTSEYAFTA 827

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D+ ++ Y L AIKG+G      I+ A  +  PF  L DFC RVD KK+N+R LE+++ A
Sbjct: 828  NDDGQVVYGLGAIKGLGEGPIDSIVTARKENGPFTDLFDFCRRVDLKKVNKRALEAMIRA 887

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITLEK 942
            GA+D  G  R QL+ S++     A    +N      ++F      A +   ++D   + +
Sbjct: 888  GAMDKLGAGRAQLMASIEKAILQAGQQSRNEAAGMVDMFGDMLETAADVDAYTDVADIRE 947

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAM 1000
            +  +    R + E+  LG Y +GHP D Y+  +R+        S+A ++ N    R+A +
Sbjct: 948  WPEKK---RLKGEKDTLGLYLTGHPFDEYEREVRRF----VRSSIADLKPNKSPQRVAGL 1000

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            VV+++  KTR GS + ++T  + +   EA  F
Sbjct: 1001 VVAQRTMKTRTGSTMCFITLDDRSGRIEATLF 1032


>gi|89075405|ref|ZP_01161822.1| DNA polymerase III subunit alpha [Photobacterium sp. SKA34]
 gi|89048821|gb|EAR54391.1| DNA polymerase III subunit alpha [Photobacterium sp. SKA34]
          Length = 1159

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1056 (39%), Positives = 624/1056 (59%), Gaps = 61/1056 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G   +  I+ K +    PA+A+TD  NL   ++F   A  AGI+
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKVKPIVKKASELGMPALAMTDFTNLCGLVKFYFAAHDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +      +    G   F     + LL +  EGY+ L  L+S  Y     +  
Sbjct: 64   PIIGADFKV------QSAEMGDELF----ELTLLAANNEGYKNLTLLISEAYQRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL     EGLI+L+GG +G + +A    + ++ +  +  ++  F D  Y+ L R
Sbjct: 114  PVIDKEWLVN-HREGLIILSGGKNGDVGKALLKGNQKMVDSLVAFYQTHFPDSYYLELVR 172

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D        ++LA   +LP+VATN+   L+ + ++AH++ +A+     +   +RP+
Sbjct: 173  TGRVDEEAYLHFAIELAEKADLPVVATNDVRLLTADQFDAHEIRVAIHDGYTLVDPNRPK 232

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + +   YL++  EM  +F+D+PEAL+N+VEIA+RC+  +++    LP F   +       
Sbjct: 233  LYSAQQYLRSEEEMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD EL V+ ++ F GYFLIV +F
Sbjct: 288  IEDFLITKSREGLEERLEFLFPDPEVRAARRPEYDERLDIELKVVNQIGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFDIDFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDIDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P +P
Sbjct: 408  MDKRDLVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPAEP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  +A  AD  V  L+++ + LEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFDAEPQLGQAYDADEEVRDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R V+     +++
Sbjct: 527  PLYCDAEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRLVEQGKDPINI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    +  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPMDDQKSFAMLQRSESTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +V N  +RK+ +E +          S+  ++DP    T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 647  MVDNFIDRKHAREAVSYPDEKWQHESLKEILDP----TYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  G+ KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAVFEEGSIKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +KI     +  +  ++++PP VN     
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKIISLVDECHRMKLKLLPPDVNKGLYR 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  + Y + A+KGVG     +I+ A      F  L DFC+R+D+KK+N+RVLE L
Sbjct: 823  FNVDEDGAVVYGIGAVKGVGEGPIENIISAREKGGHFKDLFDFCARIDTKKVNKRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + +GA+D  G +R  +L +LD+  K A        ++H    A  +      +T     V
Sbjct: 883  IKSGAMDRLGPNRAAMLATLDDAIKAA--------SQHHQAEAFGQADMFGVLTAAPEEV 934

Query: 946  EN---------SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            EN           V  E E+  LG Y +GHP++ Y   L+       +++  T R     
Sbjct: 935  ENKYANIPEAPDKVWLEGERETLGLYLTGHPINAYISELKHYTTWRLKDAQQTGRDKVAT 994

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +A +V++ +   T++G+RIG +T  + +   E   F
Sbjct: 995  VAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|54310069|ref|YP_131089.1| DNA polymerase III subunit alpha [Photobacterium profundum SS9]
 gi|46914508|emb|CAG21287.1| putative DNA polymerase III, alpha subunit [Photobacterium profundum
            SS9]
          Length = 1158

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1052 (39%), Positives = 629/1052 (59%), Gaps = 54/1052 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL +HS +S+++G   ++ ++ K+A    PA+A+TD  NL   ++F   A  AG++
Sbjct: 4    PRFIHLHIHSDFSMVDGLSKVSPLVKKVAEIGMPAMALTDFTNLCGLVKFYFAAHGAGMK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +  ++   + N+       +  + +L +  +GYQ L  L+S+ YL    +  
Sbjct: 64   PIIGADFKVHSEE---LENE-------LADLTILATDNDGYQNLTMLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL + G +GLI+L+G   G + +A    +  +  + L  +K  F D  Y+ L R
Sbjct: 114  PVIDKEWLVQYG-KGLILLSG-RCGDVGKALLKGNQLLVNRCLEFYKTHFEDSFYLELVR 171

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D        V+LA   +LP+VATN+  FLS E ++AH++ +++     +   +RP+
Sbjct: 172  TGRPDEDAYIHFAVELAANEDLPVVATNDVRFLSAEQFDAHEIRVSIHDGYTIVDPNRPK 231

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + +P  YL+   EM  +FSD+PEAL N+VEIA+RC+  +++    LP F   +       
Sbjct: 232  LYSPQQYLRTEEEMCELFSDIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGDL-----S 286

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA     +    +   +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 287  TEDFLVVKSREGLERRLAYLFPDEAVRVEKRPEYDERLEIELKVINQMGFPGYFLIVMEF 346

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL+F LLFERFLNP+R+SMPDFDIDFC
Sbjct: 347  IQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLKFDLLFERFLNPERVSMPDFDIDFC 406

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDRL K+IP +P
Sbjct: 407  MDKRDLVIDHVAEIYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKMIPAEP 466

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  +A  AD  V  L+++ + LEG+ R+A  HA G+VI    ++   
Sbjct: 467  GMTLA-KAFEAEPQLGDAYNADEEVKALIDMCRILEGVTRNAGKHAGGVVISPTTITDFS 525

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +     A+    +++
Sbjct: 526  PLYCDAEGANPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRREAEGKEPINI 585

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    +  +FQLES GM+  ++ +QPD  ED+IALV+L+RPGP+ + 
Sbjct: 586  ASIPMDDKKSFAMLQRSESTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSG 645

Query: 659  VVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 646  MVDNFIDRKHGREEVSYPDATWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGAD 705

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 706  MLRRAMGKKKPEEMAKQRTTFEQGAVNNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 765

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT ++K HYP EF+AA MT +MDN +KI     +  +  I ++PP VN     F V 
Sbjct: 766  VSYQTLYLKAHYPAEFMAAVMTADMDNTDKIIGLVDECLRMKIPLLPPDVNKGLYRFNVD 825

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +   I Y + A+KGVG     +++EA      F  L DFC+R+D+KK+N+RVLE L+ +G
Sbjct: 826  EQGAIVYGIGAVKGVGEGPIENLIEAREKGGHFKDLFDFCARIDTKKVNKRVLEKLIKSG 885

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A+D  G +R  L+ +L++  K A         +H +  A  +      +T     VE + 
Sbjct: 886  AMDRLGPNRATLMATLNDAIKAA--------GQHHHAEAFGQADMFGVLTAAPEEVEQAY 937

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                     +  E E+  LG Y +GHP++ Y   L+       +++  T R     +A +
Sbjct: 938  ANIPEWPDKIWLEGERETLGLYLTGHPINAYISELKHYTTWRLKDANPTGRDKVASVAGL 997

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V++ +   T++G+RIG +T  + +   E   F
Sbjct: 998  VIAARVMTTKRGTRIGLMTLDDRSGRMEVMLF 1029


>gi|227357235|ref|ZP_03841592.1| DNA polymerase III, alpha chain [Proteus mirabilis ATCC 29906]
 gi|227162498|gb|EEI47487.1| DNA polymerase III, alpha chain [Proteus mirabilis ATCC 29906]
          Length = 1144

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1036 (40%), Positives = 611/1036 (58%), Gaps = 46/1036 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K+A+   PA AITD  NL   ++F   A  AGI+PI+G   D+ ++ 
Sbjct: 1    MIDGLAKTGPLVKKVASLGMPAFAITDFTNLCGLVKFYGAAHGAGIKPIVGA--DVYLET 58

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
             L               + +L     GYQ L  L+S  Y    G     I   WL     
Sbjct: 59   ELLGDEYAH--------LTILARDNVGYQNLTLLISEAYKHGYGAAGPVIKQEWLTTY-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGL++L+GG  G + +     +  + E+ L  ++  F D  Y+ L R  R  +     + 
Sbjct: 110  EGLLLLSGGRMGDVGKFLLRGNRALVEQCLEYYQTHFPDSYYLELIRTGRPDEESYLHEA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V LA    LP+VATN+  FL  +D++AH++ +A+     +S   RP+  +P  Y++   E
Sbjct: 170  VALASEKGLPVVATNDVRFLDSDDFDAHEIRVAIHDGFTLSDPKRPKHYSPQQYMRTEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEALEN+VEIA+RC+  +++    LP+F   +        E+ L  K+  GL
Sbjct: 230  MCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPTGDM-----STEDFLIKKSKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDPQEREKRRPEYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD VI +V +
Sbjct: 345  GRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A A + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFAAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  QLPEIYEADEEVKSLIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDPEGNNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     VD+S I   D  ++ +
Sbjct: 524  QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKSLEPVDISAISLTDQRSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + +V N  +RK+G E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGVE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVKWQHESLQPVLEPTYGVILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F +GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEAGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V D   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  + D C+R ++KKLNRRV+E L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIVEARQQGGHFKDIFDLCARTETKKLNRRVMEKLIMSGAFDKLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-----SSVRFENEQR 957
             SL++  K A    K       ++F    G  ++     + S  N       V  E E+ 
Sbjct: 884  SSLEDALKAADQHAKAEAIGQSDMF----GVLAEAPEQVERSYANVPKWPDQVVLEGERE 939

Query: 958  VLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             LG Y +GHP+  Y K I R       ++ V T RG  +++A +V++ +   T++G+RIG
Sbjct: 940  TLGLYLTGHPITRYLKEIERYAAGTRLKDLVPTPRGQMVKVAGLVLASKVFTTKRGNRIG 999

Query: 1017 WVTFSEPAKEYEANFF 1032
              T  + +   E   F
Sbjct: 1000 ICTLDDRSGRLEIMLF 1015


>gi|149192145|ref|ZP_01870366.1| DNA polymerase III subunit alpha [Vibrio shilonii AK1]
 gi|148834015|gb|EDL51031.1| DNA polymerase III subunit alpha [Vibrio shilonii AK1]
          Length = 1159

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1050 (39%), Positives = 621/1050 (59%), Gaps = 49/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A ++G++
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPAMALTDFTNLCGLVKFYGNAHSSGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P+IG    +          Q       +  I +L +   GY  L  L+S+ YL    +  
Sbjct: 64   PLIGADFAV----------QSDEFGDELTRITVLAADNTGYNNLTLLISKAYLRGHIQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E+ +EGLI+L+G   G + +A    ++ +A++    ++  F DR Y+ L R
Sbjct: 114  PVIDKAWLVEL-SEGLIVLSGAKEGDVGKALLKGNTTLAKQCAQFYQTHFPDRYYLELIR 172

Query: 189  HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                D   ES +   V+LA   +LP+VATN  +F+ +E ++AH++ +A+     +    R
Sbjct: 173  TGRPDE--ESYLHFAVELAEELDLPVVATNEVVFVDKELFDAHEIRVAIHDGYTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   YL++  +M  +F+D+PEAL+N+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKKYSAQQYLRSEEDMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPAFPTEGM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             +E + L  K+  GLE RL         +     +Y  RL  EL+VI +M F GYFLIV 
Sbjct: 287  -KETDFLVMKSREGLEERLEFLFPDEAVRAERRPEYDDRLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KLIP 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPA 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +    +    D  V  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFKAEPALPQLYDGDEEVRDLIDMCRILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  +     V
Sbjct: 525  FAPIYADSEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIESIPLDDSASFQLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+G+E +        H  +   L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 645  SGMVDNFIDRKHGREAVSYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFEEGAINNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N     F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLFRFN 824

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  +  I Y + AIKGVG      I+EA +    F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VNEEGAIVYGIGAIKGVGEGPIDVIIEARNKGGHFRDLFDFCARIDIKKVNKRVIEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----KITLEK 942
            +GALD  G  R  ++ SL++  K A    +       ++F    G  +D     +    +
Sbjct: 885  SGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQADMF----GVLTDAPEDVEHKYTQ 940

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                   V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V+
Sbjct: 941  VPPWPEKVWLEGERETLGLYLTGHPINAYLKELTKYTSCRLKDATPTRRDQSLTVAGLVI 1000

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T++G+RIG +T  + +   E   F
Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|108762214|ref|YP_633981.1| DNA polymerase III subunit alpha [Myxococcus xanthus DK 1622]
 gi|108466094|gb|ABF91279.1| DNA polymerase III, alpha subunit [Myxococcus xanthus DK 1622]
          Length = 1185

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1055 (39%), Positives = 627/1055 (59%), Gaps = 51/1055 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL +H+ YSLL+GA+ + +++  +      ++A+TD  N+F A++F +KA  AGI+P
Sbjct: 2    SFTHLHLHTLYSLLDGAIRMKDLIKTVKEKGMSSVAVTDHGNMFGAIDFYKKAKDAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128
            I+G +  +      +  ++          ++L+    EGY  L  L S  Y+   G    
Sbjct: 62   ILGMEAYVAGPKGREDRSE-----KVSHHLILVAKNEEGYANLRYLSSTAYM--HGFYYH 114

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             RI    L E  ++GL  LT    G +  A F      A +    +K +F     ++ +Q
Sbjct: 115  PRIDKKVLAE-HSKGLFALTACLGGEVTSACFRGDMDHARRAAQEYKDIFDPGHFFLEVQ 173

Query: 188  RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   ++ + ++ + QL+   ++PL AT ++ ++  ED  AH++LM +A    ++   R 
Sbjct: 174  SNGMPEQDKANENLKQLSRDLDIPLCATADAHYIKREDARAHELLMCIASGKTLADGKRM 233

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            + + D  Y+ + +EM+  F D+PEA+ NT  IA +C+  L++  P+LP F  K  D    
Sbjct: 234  KHSTDKLYVTSPTEMLEFFKDIPEAVHNTQRIAEQCNLELKLGKPMLPTF--KVPD--SH 289

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGY--HAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              ++ +   A  GL  R  + A    Y    + Y+ RL  E+ VI +M F GYFLIV DF
Sbjct: 290  TPDSYMAELAYEGLRERFTELAATVTYPIDREQYQARLALEIGVIQKMGFCGYFLIVQDF 349

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I WAKK NIPVGPGRGSGAGS+ AYAL ITD+DP+ ++LLFERFLNP+R+SMPDFDIDFC
Sbjct: 350  INWAKKMNIPVGPGRGSGAGSLVAYALRITDVDPIPYNLLFERFLNPERVSMPDFDIDFC 409

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRRDEVI+YV  KYG   V QIITFGSL+AK+ LRDV R   +P+S+ DR+ KL+P   
Sbjct: 410  QDRRDEVIQYVGRKYGEMNVGQIITFGSLKAKSVLRDVCRVFALPFSEGDRIAKLVPE-- 467

Query: 484  AHPVSL-QAIADDSRFREARLADPS-----------VDRLLEISQKLEGLYRHASTHAAG 531
               ++L +AI  + R +E  +  PS              +LEI+  LEGL+R    HAAG
Sbjct: 468  VLNITLREAIEMEPRLKEM-METPSNIGEVEGKPVTTRDVLEIALALEGLHRQPGMHAAG 526

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI D+PL + VP+Y+       +TQF    +E AGL+KFDFLGLKTLT++Q +LD + +
Sbjct: 527  VVIADKPLWEFVPVYQPPGEKTLITQFAKDEVEAAGLVKFDFLGLKTLTVIQHALDLVKR 586

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              G  +    IP +D +T+ L+    T GIFQ+ESSG  + +  ++P+C ED+IA  +LY
Sbjct: 587  NHGKDIPRHEIPLNDEKTWELMAKGDTAGIFQMESSGFTEMVVKLKPNCFEDVIAAGALY 646

Query: 651  RPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+D+  + V+ NRK+G+EK+   HP ++P+LK+T GVI+YQEQVMQI+Q+L GY+L 
Sbjct: 647  RPGPLDSGMVDVFINRKHGREKVSYPHPALEPVLKDTYGVIVYQEQVMQISQVLGGYTLG 706

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  E M  ++  F+ G +KN +   +A  IF+L+ KFA+YGFNKSH+AA
Sbjct: 707  RADLLRRAMGKKKAEVMQAERAGFLEGCAKNNVDLKVAGEIFDLMEKFAEYGFNKSHSAA 766

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y +++  TAW+K HYP EF+AA ++ E DN +K+ K   +AR+  ++++PP VN   ++F
Sbjct: 767  YGLVTIHTAWLKAHYPCEFMAALLSSEKDNTDKVVKHIGEARESGLEVLPPDVNQSDMEF 826

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                 +I + L AIKGVG      I+EA  D  F SL DFC RVDS+K+NR+V+E+LV A
Sbjct: 827  GAVSGKIRFGLGAIKGVGEGAIESILEARKDGSFKSLFDFCERVDSRKVNRKVMEALVKA 886

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD----KITLEKFS 944
            G+ D    SR Q+  +++         +K++     ++F    G  SD     +  +   
Sbjct: 887  GSFDFEKRSRRQIFDTIEKAMNRGSASQKDKAAGQSSLFGMLAGPSSDGGGGGLKDDYVE 946

Query: 945  VENSS--VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI----RGNNIRLA 998
            VE+ S   R   E+  +GFY SGHPL  Y   L++     Y   +  +    + + + +A
Sbjct: 947  VEDWSEKERLSLEKEAIGFYVSGHPLHQYDKELKR-----YARPITAVQRARKDDKLTVA 1001

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +V   +++ T+ G R+ WVT  + +   E   FP
Sbjct: 1002 GIVTVLRERPTKTGKRMAWVTIEDLSGSIELVCFP 1036


>gi|167856189|ref|ZP_02478926.1| DNA polymerase III subunit alpha [Haemophilus parasuis 29755]
 gi|167852678|gb|EDS23955.1| DNA polymerase III subunit alpha [Haemophilus parasuis 29755]
          Length = 1158

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1056 (40%), Positives = 614/1056 (58%), Gaps = 62/1056 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S++ G   +  ++    A+   A+A+TD  N    + F  +A  +G++
Sbjct: 4    PRFVHLKVHSDFSMINGLAKVKPLIKACVANNMVAMALTDFTNFCGLVRFYGEALGSGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPT---VPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            PI+G  + +              P P    +  + LL     GY  +  L+S+ Y   QG
Sbjct: 64   PIVGADVMV-------------RPEPESEELYELTLLAKNNTGYHNITLLLSKAY--QQG 108

Query: 126  KQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 +   +WL E   +G+I+L+GG +G + +A    + Q AE+ L  +++ F +  Y+
Sbjct: 109  YVEFPVVEKAWLAE-HNDGVILLSGGRNGDVGKALLKENQQEAEQLLAFYQRYFHNHYYL 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +L R  R  + +   Q V  +    +PLVA N+ +FL ++D+EAH++ +A+  S  +   
Sbjct: 168  SLCRTGRSDEEHYIQQAVTFSQKFAIPLVAVNDVMFLKQDDFEAHEIRVAIHDSFTLDDP 227

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP + +   Y ++  EM  +F+DLP+A+ENT+ IA+RC+  +++    LP F   E   
Sbjct: 228  KRPQKYSEQQYFRSEDEMCQLFADLPQAIENTLFIAQRCNVTIRLGEYFLPNFPTGELS- 286

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  KA  GLE RLA        +      Y +RL  EL+VI +M F GYFLI
Sbjct: 287  ----TEDFLVKKAKEGLEERLAFLFPDPDVRASKRSVYDERLQVELDVINQMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 343  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLI
Sbjct: 403  VDFCMDGRDRVIEHVSETYGCQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLI 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   ++ +A   + +  E    D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 463  PPDPGMTLA-KAFEAEPKLPELYDTDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTAI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---- 595
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR  K    
Sbjct: 522  TDFSPLYFDSYGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLEKEGKP 581

Query: 596  -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD + + LL    T  +FQLES GM+  +  +QP   EDIIALV+L+RPGP
Sbjct: 582  LVRIESIPLDDEKAFKLLKAAKTTAVFQLESRGMKDLISRLQPSNFEDIIALVALFRPGP 641

Query: 655  IDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +++ +V N  +RK+GKE I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 642  LESGMVQNFIDRKHGKEPIAYPDAQYQHESLQPILEPTYGIIVYQEQVMQIAQVLAGYTL 701

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM  Q+  F  GA K GI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 702  GGADLLRRAMGKKKPEEMAAQRATFEEGAKKQGIDGELAMKIFDLVEKFAGYGFNKSHSA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT EMDN +KI  F  +     + ++PP +N+    
Sbjct: 762  AYALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDINSGKHR 821

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y L AIKGVG      ++EA + D  F  L D  +RVD +K+NRR  E L
Sbjct: 822  FSVNEKGEIVYGLGAIKGVGEGPIDAMLEARNKDGIFKDLFDLTARVDLRKVNRRTFEGL 881

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + AGA D  G  R  L+++L++  +         +++H  + A  +      +T     V
Sbjct: 882  IMAGAFDKLGPHRAALMKNLEDALR--------ASDQHNKMEALGQSDMFGVLTETPEEV 933

Query: 946  ENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            +N+             +NE+  LG Y SGHP+  +   L         E   T RG    
Sbjct: 934  QNAYANTPKWTEQTILDNEKATLGLYLSGHPVGRFLKELAHYAPNKLNEVQPTYRGQTTT 993

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +A +++  +   T+KGSRIG  T  + + + +   F
Sbjct: 994  VAGLIMGARIATTKKGSRIGIATIEDRSGKMDLTLF 1029


>gi|294140019|ref|YP_003555997.1| DNA polymerase III subunit alpha [Shewanella violacea DSS12]
 gi|293326488|dbj|BAJ01219.1| DNA polymerase III, alpha subunit [Shewanella violacea DSS12]
          Length = 1157

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1043 (40%), Positives = 607/1043 (58%), Gaps = 36/1043 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PSFVHL+VHS YS+ +G   +  IL K+     PA+A+TD  NL   ++F      AG++
Sbjct: 4    PSFVHLRVHSDYSMSDGLAKVKPILAKVTELGMPAVALTDQTNLCGLVKFYGACHGAGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    + +    K           + S+ ++    +GY  L  L+S  YL       
Sbjct: 64   PIIGADFWVRVPGFDK----------DLCSVTVIAMDNDGYLNLTLLISDAYLRGHINDR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +  + GL++L+GG  G + RA    +    +  +  ++  F DR Y+ L R
Sbjct: 114  AVIDQEWLIKY-SNGLLLLSGGRHGDVGRALLKGNKPQVDSLVEFYQTHFPDRYYLELLR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA    LP+VATN  +F S E ++AH++ +A++    ++   RP+
Sbjct: 173  TGRPDEETYLHLAVELAQEKGLPVVATNQVVFNSPEFFDAHEIRVAISDGFTLADPRRPK 232

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC---DDI 303
               D  Y K+  EM ++F D+PEA+ NTVEIA+RCS  +++    LP F   E    D +
Sbjct: 233  KYSDQQYFKSSEEMCALFEDIPEAIANTVEIAKRCSVTVRLGEYFLPNFPTGELSIEDFL 292

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             K  E+ L N+    LE       + +      Y +RLD EL VI +M F GYFLIV +F
Sbjct: 293  VKVSEDGLENR----LEFLFPDPEV-RAQKRPAYDERLDIELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW K  +IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDFC
Sbjct: 348  IQWGKDQDIPIGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ K++P +P
Sbjct: 408  MDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMVPAEP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   +   +E+   D  V  L+++ + LEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFEVEPALQESYDGDEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +     A     V +
Sbjct: 527  PIYCDSEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKRKALGKEPVRI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD +++ LL    T  +FQLES GM+  ++ +QPD  ED+IALV+L+RPGP+ + 
Sbjct: 587  ESIPLDDKKSFKLLQRYETTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIV-----SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N   RK+G+E++        H  +  +L+ T G+I+YQEQVMQIAQ+L+GYSL  AD
Sbjct: 647  MVDNFIERKHGREEVSFPDAEYQHESLKWVLEPTYGIILYQEQVMQIAQVLAGYSLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA  NGI   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRGTFEEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTHYP EF+AA M+ +MDN +KI     +  +    ++PP VN   + F V 
Sbjct: 767  VSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVILVDECERMGQPLLPPDVNKGLLKFNVD 826

Query: 832  -DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             + +I Y + AIKGVG      I+ A  D PF  L DFC+RVD KKLN+R++E L+ AGA
Sbjct: 827  EEGKIVYGIGAIKGVGDGPVESILAARKDGPFKDLFDFCARVDLKKLNKRIMEKLICAGA 886

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSS 949
            LD  G  R  ++ +L    + A    K       ++F        D K    + +     
Sbjct: 887  LDSLGPHRAAMMATLPAAVRAADQNAKAEAIGQHDMFGLLNSDTEDIKQQFVQCTPWPDK 946

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
            +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +V++ +   T
Sbjct: 947  IWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVIATRVMMT 1006

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
            ++GS++G VT  + +   E   F
Sbjct: 1007 KRGSKMGLVTLDDKSARLEVMLF 1029


>gi|163857430|ref|YP_001631728.1| DNA polymerase III subunit alpha [Bordetella petrii DSM 12804]
 gi|163261158|emb|CAP43460.1| DNA polymerase III, alpha subunit [Bordetella petrii]
          Length = 1163

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1008 (41%), Positives = 612/1008 (60%), Gaps = 56/1008 (5%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           +++ +  +P+FVHL+VHS +S+++G + + +++ ++A   QPA+A+TD +N+F  ++F +
Sbjct: 1   MSEAVNPTPAFVHLRVHSEFSVVDGIVRIPDLIKRVAQLGQPAVALTDLSNIFGLIKFYK 60

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            A  AG++PI GC + +   D+       + PF     ++LLV   +GY  L EL++R +
Sbjct: 61  GARGAGVKPIAGCDVWLTNDDD------PEKPF----RLLLLVRNHQGYLNLCELLTRSF 110

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
           L +QG+    I   WLQ  G +GLI+L+GG +G I  A    ++  A      +  LF  
Sbjct: 111 LENQGRGRAEIRREWLQ--GRQGLIVLSGGRAGDIGHALDAGNAVTALALARQWGALFPG 168

Query: 181 RLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             Y+ LQR    G + Y ++  ++LA    LP+VAT+   FL   +Y+AH+  + +A   
Sbjct: 169 AFYIELQRAGADGDEAYTQA-AMRLAAEAGLPVVATHPVQFLDASEYQAHEARVCIAQGE 227

Query: 239 VVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
           +++   R  R T D YL +  EM   F+D+P AL NTVEIA+RC+  L +  P LP F  
Sbjct: 228 ILADPRRVRRFTKDQYLLSTEEMARRFADVPSALANTVEIAKRCNLTLVLGKPRLPNFPT 287

Query: 298 KE---CDD--IQKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVI 348
            +    DD  +Q  EE         GLE RL       A      AQ Y +RL +E   I
Sbjct: 288 PDGISLDDYLVQLSEE---------GLEKRLEFLFPDPAERDAKRAQ-YYERLRWECKTI 337

Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
            +M F GYFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFL
Sbjct: 338 IQMGFPGYFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFL 397

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
           NP+R+SMPDFDIDFCQD R+ VI YV+ KYG E V+QI TFG+L AKA +RD GR L MP
Sbjct: 398 NPERVSMPDFDIDFCQDNRERVIDYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMP 457

Query: 469 YSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
           Y   D L KLIP +PA P SL + + D+  F+E    +  V  L+++++ LEGL R+   
Sbjct: 458 YLFCDGLSKLIPFNPADPWSLDRTLKDEPAFKERYEQEEEVRALVDLARPLEGLTRNIGM 517

Query: 528 HAAGIVIGDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
           HA G++I    L+   P+Y +  + +  V+QF+   +E AGL+KFDFLGL+ LT+L  ++
Sbjct: 518 HAGGVLIAPGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAV 577

Query: 587 DFL---AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++    +     D+  +P DD   Y +L    T  +FQLES GM++ L+ ++P+  EDI
Sbjct: 578 RYVRRFNESKRDFDIMALPLDDPAAYKVLCDANTTAVFQLESRGMKELLKKLRPNTFEDI 637

Query: 644 IALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
           IA+++LYRPGP+++ +V  + NRK+G+  +   HP ++  LK T GVI+YQEQVM I+Q+
Sbjct: 638 IAMLALYRPGPLESGMVDDFVNRKHGRATVDYFHPDLEATLKSTYGVIVYQEQVMLISQI 697

Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
           + GYSL  AD+LRRAMGKK  EEM K +E F  GA + G    +AV +F+L+ KFA YGF
Sbjct: 698 IGGYSLGGADLLRRAMGKKKPEEMAKHRELFEKGAKEKGHDPNLAVKLFDLMEKFAGYGF 757

Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
           NKSH+AAYA+I+YQTAW+K ++P EFLAA+++ +MD+ +K++ FC+DA+   + ++PP V
Sbjct: 758 NKSHSAAYALIAYQTAWLKAYHPTEFLAATISSDMDDTDKVQVFCRDAQDNGVLVLPPDV 817

Query: 822 NT------PCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870
           N       P  D    + R    + Y L A+KG G      I+ A  AD PF +L DFC 
Sbjct: 818 NASGYRFEPVADEHTREGRPPRTMRYGLGAVKGTGQGAVEEILRAREADGPFANLFDFCR 877

Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
           RV+   +NRR +E+L+ AGA D    +R  +L S+    + A+  +  R+    ++F  +
Sbjct: 878 RVNKHAVNRRTIEALIKAGAFDTIEPNRAAMLASVGTAMEAAE--QAARSANQVSLFGDD 935

Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
            G       L K +  N   +   E+  LGFYFSGH  D ++  +R++
Sbjct: 936 SGDVVAG-ELSKVAPWNLHTKLTEEKSALGFYFSGHLFDHWRDEVRRI 982


>gi|325528701|gb|EGD05777.1| DNA polymerase III subunit alpha [Burkholderia sp. TJI49]
          Length = 1118

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1028 (41%), Positives = 617/1028 (60%), Gaps = 52/1028 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F Q+A   GI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNPDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   WL    +EGL+ L+G   G I  A    + + A +    + K+F    Y+ LQR
Sbjct: 114  AELDPGWLDGELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T D Y + + EMV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFTTDQYFRTQDEMVALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RLAQ       +      Y +RL+FE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSKEGLEKRLAQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 529  FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  SQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+S+  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMVKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCIVNNLVVLPPDINQSHYRFEPVAEADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA 
Sbjct: 829  SRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTIEALIRAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH------ENIFAHEKGTFSDKITLEKFSV 945
            D    +R QLL S+    + A   E N           E+  AH          L     
Sbjct: 889  DSLNTNRAQLLASVPLAMEAADQAEANALQAGLFDMGAESPHAH---------ALVDEPA 939

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004
             +   R + E+  LGFY SGH  D Y+  +R+       + V  ++ G +  +A ++ S 
Sbjct: 940  WDDKRRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKVGELKEGRDKLVAGIIASL 995

Query: 1005 QQKKTRKG 1012
            + + T++G
Sbjct: 996  RTQMTQRG 1003


>gi|307250356|ref|ZP_07532305.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 4 str. M62]
 gi|306857631|gb|EFM89738.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 4 str. M62]
          Length = 1158

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1055 (40%), Positives = 620/1055 (58%), Gaps = 64/1055 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  +A  +G++PI
Sbjct: 6    FVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKPI 65

Query: 71   IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IG  + +    D +D  ++T              LL     GY  +  L+S+ Y   QG 
Sbjct: 66   IGADIFVRPEPDSEDFFELT--------------LLAKNNTGYHNITLLLSKAY--QQGY 109

Query: 127  QSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                +   +WL E+  EG+I+L+GG +G + +A    +   A++ +  +++ F +  Y+ 
Sbjct: 110  VEFPLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENEAEADELVGFYQQYFPNHYYLA 168

Query: 186  LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  +    
Sbjct: 169  LCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPK 228

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP+  +P  Y ++  EM  +F+DLP+A+ENTV+IA RC+  +++    LP F   +    
Sbjct: 229  RPKKYSPQQYFRSEQEMCVLFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTGDLS-- 286

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLIV
Sbjct: 287  ---TEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIV 343

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 344  MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 403

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KLIP
Sbjct: 404  DFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIP 463

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 464  PDPGMTLA-KAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAIT 522

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR  +     
Sbjct: 523  DFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEP 582

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+
Sbjct: 583  VRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPL 642

Query: 656  DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            ++ +V N  +RK+G E++        H  + P+L  T GVI+YQEQVMQIAQ+L+GY+L 
Sbjct: 643  ESGMVQNFIDRKHGHEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTLG 702

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 703  GADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSAA 762

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+    F
Sbjct: 763  YALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHRF 822

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V +   I Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR  E L+
Sbjct: 823  SVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             +GA D  G  R  L+++L++  K         +++H  + A  +      +T     V+
Sbjct: 883  MSGAFDKLGPHRAALMKNLEDALK--------ASDQHSKMEALGQSDMFGVLTETPEEVQ 934

Query: 947  NSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
            N+             E E+  LG Y SGHP+  +   L         E   T RG  + +
Sbjct: 935  NAYANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTV 994

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A +++  +   T++GSR+G  T  + + + +   F
Sbjct: 995  AGIIMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|56179800|gb|AAV82522.1| DNA polymerase III alpha subunit [Idiomarina loihiensis L2TR]
          Length = 1142

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1034 (40%), Positives = 611/1034 (59%), Gaps = 43/1034 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G   +  I + +A    PA+AITD  N    + +  KA   G++P+IGC   +    
Sbjct: 1    MIDGLAKVGPICEAVAEAGMPALAITDQMNFCGLVRYYGKAHQLGLKPLIGCDFWV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q   P   +  +  L    EGYQ++ +L+S+ YL    K    I   WL+E   
Sbjct: 57   ------QADYPESEIFRLTALAMDNEGYQQITQLISKAYLRGNIKGKPVIDKDWLKE-HN 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQV 200
            EG+I+L+G   G + +A         +  L  +++ F DR Y+ L R  R  +     + 
Sbjct: 110  EGIILLSGSRQGDVGQALIKGHDSQLDAALDFYQQYFPDRYYLELVRTGRPQEENYLHKA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V LA    LP+VATN  +FL EED++AH++ +A+     +  K RP+  +P  YL++  E
Sbjct: 170  VALAGETGLPVVATNEVVFLKEEDFDAHEIRVAIHDGYQLEDKRRPKKYSPQQYLRSSEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEA+ENTVEIA+RC+  +++    LP+F      D+  EE   L   +  GL
Sbjct: 230  MSELFSDIPEAIENTVEIAKRCNVTVRLGEYFLPKF---PTGDLTTEEF--LIKVSEEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL      A  +     +Y +RL  EL VI  M F GYFLIV +FIQW+K N IPVGP
Sbjct: 285  EERLEFLFPDAEEREQKRPEYDERLKRELGVINDMGFPGYFLIVMEFIQWSKDNGIPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC DRRDEVI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG E V+QIITFG++ AKAA+RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405  LYGREAVSQIITFGTMAAKAAIRDVGRVLAHPYGFVDRISKLIPGDPGMTLA-KAFEIEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +   A   D  V  ++++++ LEG+ R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  QLGAAYDQDEEVKAIIDMARILEGVTRNAGKHAGGVVISPTKITDFSPLYCDDEGNNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++Q ++D + +R  K     +D++ I   D   + L
Sbjct: 524  QFDKDDVESAGLVKFDFLGLRTLTIIQWAVDMVNRRHAKSGKDPIDITSIDLTDPACFKL 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM++ ++ + PD  EDIIALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LKKAETTAVFQLESRGMKELIKKLLPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDAEYQHESLQPILEPTYGVILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+E F  GA++N I   +A  IF+L+ KFA YGFNKSH+AAYA++SYQT WMKTH+P
Sbjct: 704  MAKQREIFAKGAAQNNIDPELATKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTHFP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA M+ +MDN +KI     +  +  + ++PP VN     F V +  R+ Y + AIK
Sbjct: 764  AEFMAAVMSADMDNTDKIVTLADECERMGLDLLPPDVNKGEYKFTVDEQQRVVYGIGAIK 823

Query: 844  GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I++A  +  PF  L DFC RVD K++N+R+L+ L+ AGA+D  G  R  L+
Sbjct: 824  GVGEAPIESIIKARQEGGPFRDLFDFCCRVDLKRMNKRILQRLIRAGAMDNLGPHRASLM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             +L+   + A+           ++F       +    + +++ K+S    +V  E E+  
Sbjct: 884  ATLEKAIRQAEQHLNAEKIGQSDMFGVLTTEPEAVEQEFVSVRKWS---EAVWLEGERDT 940

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG Y +GHP++ ++  L+            T +  +I +A +V+  +    ++G R   V
Sbjct: 941  LGLYLTGHPINRFRAELKHYINSTLSNVTPTRKDESIAIAGLVIDVRVLTNKRGQRFAIV 1000

Query: 1019 TFSEPAKEYEANFF 1032
            T  +     +   F
Sbjct: 1001 TLDDKTARMDVRLF 1014


>gi|188025561|ref|ZP_02959074.2| hypothetical protein PROSTU_00864 [Providencia stuartii ATCC 25827]
 gi|188023078|gb|EDU61118.1| hypothetical protein PROSTU_00864 [Providencia stuartii ATCC 25827]
          Length = 1144

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1035 (40%), Positives = 615/1035 (59%), Gaps = 44/1035 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K+AA   PA AITD  NL   ++F   A  AGI+PIIG    ++ + 
Sbjct: 1    MIDGLAKTGPLVKKVAAMGMPAFAITDFTNLCGLVKFYGAAHGAGIKPIIGADFFVESE- 59

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
              ++ ++       +  + +L    EGYQ L  L+S  Y    G     I   WL +   
Sbjct: 60   --QLGDE-------IAHLTVLARNNEGYQNLTLLISEAYQKGYGAIGPTIHRDWLVK-HK 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGLI+L+GG  G + +     +  + ++ L  ++  F    Y+ L R  R  +       
Sbjct: 110  EGLILLSGGRQGDVGQFLLRGNQALVDECLAFYETHFPGCYYLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +S   RP+  +P  YL++  E
Sbjct: 170  VELATQRGLPVVATNDVRFIESSDFDAHEIRVAIHDGFTLSDPKRPKKYSPQQYLRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEALEN+VEIA+RC+  +++    LP+F      D++ E+   +R+K   GL
Sbjct: 230  MCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQF---PTGDMKTEDFLVMRSKE--GL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y +RL+ ELNVI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLKFLFPDEKVRAERRPEYDERLEVELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     VD++ IP DD +++ +
Sbjct: 524  QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKNLEPVDIAAIPLDDQKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAIKNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V D   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  + D C+RVD KK+NRRV+E L+ AGA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARQKGGIFKEIFDLCARVDLKKINRRVMEKLIMAGAFDHLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             SL++  K A    K       ++F       +   S   ++ K+      V  + E+  
Sbjct: 884  SSLEDALKAADQHAKAEAIGQTDMFGVLAEAPEQVESSYASVPKWP---DQVVLDGERET 940

Query: 959  LGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            LG Y +GHP+  Y   I R       ++   T RG    +  +V+S +   T++G+RIG 
Sbjct: 941  LGLYLTGHPITRYLNEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRGNRIGI 1000

Query: 1018 VTFSEPAKEYEANFF 1032
             T  + +   +   F
Sbjct: 1001 CTLDDRSGRLDIMLF 1015


>gi|253996658|ref|YP_003048722.1| DNA polymerase III subunit alpha [Methylotenera mobilis JLW8]
 gi|253983337|gb|ACT48195.1| DNA polymerase III, alpha subunit [Methylotenera mobilis JLW8]
          Length = 1160

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/978 (43%), Positives = 614/978 (62%), Gaps = 29/978 (2%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SPSFVHL+ HS YS+++G + +++ + +  +D+ PA+A+TD +NLF A++F + A   G+
Sbjct: 11  SPSFVHLRCHSEYSVVDGIVRIDDYVKQAVSDKMPALALTDLSNLFGAVKFYKAARGKGV 70

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           +PIIGC + ++  +N ++ ++          ++LL  +  GY  L  L+SR YL +Q + 
Sbjct: 71  KPIIGCDIWLENTENRELPSR----------LLLLCQSHTGYLTLCHLLSRAYLTNQYRG 120

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                 +W  E GTEGL++L+GG +G + +A    +  +A+K    +++LF +R Y+ +Q
Sbjct: 121 RAEFKRAWFAEAGTEGLLLLSGGLAGDVGQACAQGNVVLAKKLANEWQQLFPERFYLEVQ 180

Query: 188 R-----HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           R      +  +      V  +A+   LP+VAT+   F S +DY AH+    +A   V++ 
Sbjct: 181 RIATDAGKASEEMYIQHVRHIAHELSLPIVATHPIQFTSPDDYRAHEARTCIAEGYVLAD 240

Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
           K RP+  T + Y K ++++ ++F+D+PEAL N+VEIA+RC+  L +    LP+F     +
Sbjct: 241 KRRPQNFTTEQYFKTQADIAALFADMPEALANSVEIAKRCNLSLTLGKNYLPQFPTPNNE 300

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +     +E R      LEV      + +      Y  RLDFE NVI +M F+GYFLIVA
Sbjct: 301 SLNDYLISEARLGLAKRLEVLFPNEEV-RASKQDVYAARLDFETNVINQMGFAGYFLIVA 359

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFI WAK N +PVGPGRGSGAGSV AY+L ITD+DPL ++LLFERFLNPDR+SMPDFDID
Sbjct: 360 DFINWAKNNGVPVGPGRGSGAGSVVAYSLGITDLDPLEYNLLFERFLNPDRVSMPDFDID 419

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FCQ+ RD VI YV+ KYG + V+QI TFG++ AKA +RDVGR L +P++ VD + KLIP 
Sbjct: 420 FCQEGRDRVIDYVKQKYGIDAVSQIATFGTMAAKAVIRDVGRVLDLPFNFVDGIAKLIPL 479

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
           +    +S  A+  + +  E R  +  V  LLE++ +LEGL R+   HA G++I    ++ 
Sbjct: 480 ELGITLS-DALEKEPQLAERRENEEEVKELLELALRLEGLVRNIGMHAGGVLISPSKIAD 538

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL--- 598
             P+Y        V+Q++   +E  GL+KFDFLGL+TLT+L  +L+   ++  + +L   
Sbjct: 539 FSPVYCQPDGASLVSQYDKDDVEAVGLVKFDFLGLRTLTILDMALENANKQRAERELPPL 598

Query: 599 --SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
               +P DD  T+ LL T  T  +FQLES GM+  L+   PDC EDIIALV+LYRPGP+D
Sbjct: 599 FFETLPIDDKPTFQLLKTANTTAVFQLESRGMKDMLKQAMPDCFEDIIALVALYRPGPMD 658

Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            I  Y  RK+GK+++   HPL +P+LKET G+ +YQEQVMQIAQ+++GYSL  AD+LRRA
Sbjct: 659 LIPDYCRRKHGKQRVEYPHPLTEPILKETYGIAVYQEQVMQIAQVVAGYSLGGADLLRRA 718

Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
           MGKK KEEMD Q++ F  GA+KN +++  A ++F+LL KFA YGFNKSHAAAYA+++Y T
Sbjct: 719 MGKKKKEEMDAQRKIFTEGATKNNMTEQQASDLFDLLEKFAGYGFNKSHAAAYALVAYHT 778

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRI 835
           A++KTHYP  FLAA+M+ +M+N + +  F  D     ++++PP VN     FK V  N+I
Sbjct: 779 AYLKTHYPAAFLAATMSADMNNTDSVHIFYDDCAPNQVEVLPPDVNESEFKFKPVSKNQI 838

Query: 836 YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            Y L A+KG G+     I++A A D PF SL DFCSR+D +K+NRRV+ESL+ AGA D  
Sbjct: 839 LYGLGAVKGTGSAAIDVILQARAKDGPFTSLFDFCSRLDLRKVNRRVIESLIRAGAFDKL 898

Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
             +R  LL     +       E+   N ++N    E    S  + L   +      R + 
Sbjct: 899 EPNRHALLAG---VALAISAAEQTNANSNQNSLFGEASDQSVHV-LPNVTPWPEQQRLQE 954

Query: 955 EQRVLGFYFSGHPLDVYK 972
           E+  LGFYFSGHP   Y+
Sbjct: 955 EKIALGFYFSGHPYWSYQ 972


>gi|325295328|ref|YP_004281842.1| DNA polymerase III, alpha subunit [Desulfurobacterium
            thermolithotrophum DSM 11699]
 gi|325065776|gb|ADY73783.1| DNA polymerase III, alpha subunit [Desulfurobacterium
            thermolithotrophum DSM 11699]
          Length = 1147

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1022 (40%), Positives = 624/1022 (61%), Gaps = 27/1022 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +HS YSLL+GA+ + +++ K       A+A+TD  N++++ E  ++  A GI+PI
Sbjct: 7    FVHLHLHSQYSLLDGAIKIKDLVKKAKEYGMSAVAVTDHGNMYASYELYKECTAEGIKPI 66

Query: 71   IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IG +  I        K  N+G+        +VLL     G + L++L S +  L+     
Sbjct: 67   IGQEFYIAKGSRFDRKKGNEGEK---GSYHLVLLAKNEIGLKNLMKL-SSIAFLEGFYYK 122

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L++  +EGLI L+    G I   +     + A+     +K+LFGD  Y+ +Q 
Sbjct: 123  PRIDKEVLEKY-SEGLIALSACIQGEIPVLYLQGKEEEAKNVAKWYKELFGDDFYLEIQY 181

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ + +Q +++L+   ++ LVATN++ +L +ED+EAHDVL+ +     +S ++R R
Sbjct: 182  HGIKEQEKANQFLIKLSKELDIDLVATNDAHYLEKEDWEAHDVLLCLQTGKKLSDENRLR 241

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + Y K+ +EM+ +F ++P A+ NT+++A +    ++    +LP++      D+  +
Sbjct: 242  FSTKEFYFKDANEMLELFKEVPHAVFNTLKVAEKIDVKIKNTGYLLPKY------DVPPD 295

Query: 307  E--ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               E+ LR  A  GLE R  +  I  G   Q Y QRL  EL +I+ M F GYFLIV DFI
Sbjct: 296  YTYESYLRELAEKGLERRFKELGITNGEIKQKYYQRLQHELKIISDMGFPGYFLIVWDFI 355

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAKKN IPVGPGRGS AGS+ AYA+ ITDIDPLRF+LLFERFLNP+R++MPD D+D CQ
Sbjct: 356  NWAKKNGIPVGPGRGSAAGSLVAYAIGITDIDPLRFNLLFERFLNPERVTMPDIDVDICQ 415

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + RD VI+YV++KYG ++V QIITFG+++ K  +RDVGR L +P  +VD+  KLIPND A
Sbjct: 416  EGRDRVIQYVRDKYGEDKVCQIITFGTMKTKMVVRDVGRVLGIPPKEVDKFAKLIPND-A 474

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +   AI      +E    + ++ +LL+I+ KL+GL R    HAAG+VI    L++ +P
Sbjct: 475  KSIE-DAIDRAPEIKELAQENETISKLLKIASKLQGLARQTGVHAAGVVIAPDTLTKYIP 533

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603
            + +    D+  TQ++M  IE  GL+K DFLGLKTLT++ K++  + +R G+++D   IP 
Sbjct: 534  LAKSKDGDI-TTQYDMGQIESLGLLKMDFLGLKTLTIIDKTIKLIKERHGIEIDTRKIPL 592

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD +T+ LL    T+G+FQLES GMR  +  ++P   EDIIALV+LYRPGP+++ +   Y
Sbjct: 593  DDEKTFKLLQEGNTVGVFQLESQGMRNLMRRLKPSVFEDIIALVALYRPGPLNSGMAESY 652

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK+G E +  I P ++P LKET G+ IYQEQ+MQIA +L+GYSL EAD+LRRAMGKK 
Sbjct: 653  IRRKHGLEPVDYIFPELEPYLKETYGLFIYQEQIMQIANVLAGYSLGEADILRRAMGKKK 712

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K+ M++Q+  FI+ A + G  +     +F+ +AKFA+YGFNKSH+AAY  ++Y TA++K 
Sbjct: 713  KDVMEEQRNIFITRAVERGYPREKVEKLFDDIAKFAEYGFNKSHSAAYGFLAYVTAYLKA 772

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP E +   ++++ D  ++I K  +D R+  I + PP VN     F +    I + LA 
Sbjct: 773  HYPKELMTTMLSIDYDKTDEIVKLIKDCRENGIPVFPPDVNKSDALFSIEGKGIRFGLAG 832

Query: 842  IKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IKGVG   A+HI++   +   F  L DFC RVD K++N++V+ESL+ AGA D  G SR  
Sbjct: 833  IKGVGEKAAQHIVKIRKENGEFKDLYDFCERVDLKQVNKKVIESLIKAGAFDSTGISRAA 892

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             L+ LDN    AQ ++K ++    N+F +E    + +    K       ++ E E++ +G
Sbjct: 893  NLEVLDNAMSVAQSLQKTKSKGLMNLFDNETKIVNKEFP--KVREWPDRIKLEYERQAIG 950

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY SGHPL  YK I++        E  +   G  ++LA  +     K+T++G     V  
Sbjct: 951  FYLSGHPLLEYKDIVQ-FSFDLTSEKDSWKDGQEVKLAGAITEVTTKRTQRGDLWATVEI 1009

Query: 1021 SE 1022
            S+
Sbjct: 1010 SD 1011


>gi|319787804|ref|YP_004147279.1| DNA polymerase III subunit alpha [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466316|gb|ADV28048.1| DNA polymerase III, alpha subunit [Pseudoxanthomonas suwonensis
           11-1]
          Length = 1191

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1009 (41%), Positives = 607/1009 (60%), Gaps = 60/1009 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLN--------------NILDKIAADQQPAIAITDTNNLFSA 55
            FVHL VH+ YSL +  + +               N+L +      PA+A+TD NNLF+ 
Sbjct: 3   GFVHLHVHTEYSLADSIIRVPEKPDQADPAKAKRPNLLSRAVELGLPALAVTDLNNLFAL 62

Query: 56  LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
           ++F +   A GI+P+ G  L I        ++ G+ P+     +  LV    GY  L  L
Sbjct: 63  IKFYKACEAVGIKPVAGADLMI-------ASSPGEAPW----RMTALVRDHGGYLNLSRL 111

Query: 116 VSRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           ++R ++    ++  V +   W++E G+ GLI+L G  S    R    N   +A++ L  +
Sbjct: 112 LTRAWMEGHRQEGGVAVRPEWVRECGS-GLILLAGRES-LAGRLASENRHDLAQQHLADW 169

Query: 175 KKLFGDRLYVNLQRHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
           ++ F   L + L R R  G + +  S  +  A    +P+VA+N+  FL    ++AH+  +
Sbjct: 170 QRDFDGNLCLELTRTRRDGEEAF-NSFALHAAAERGIPVVASNDVRFLDRAGFDAHEARV 228

Query: 233 AVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
            +A   V+    RPR  +P+ YLK+  EM ++F+D+P+A+ NTVE+ARRC+  L +    
Sbjct: 229 CIASGRVLDDPKRPRDYSPEQYLKSPEEMAALFADIPDAISNTVELARRCNLELTLGKYA 288

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
           LP +     + +    ++ +R ++ AG+E RLA+  +A G   +DY  RLDFEL+ I +M
Sbjct: 289 LPDYPVPSDETL----DSWIRKESYAGIEERLAKNPLAPGKTREDYFARLDFELDTIIKM 344

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+
Sbjct: 345 GFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERFLNPE 404

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L  PY  
Sbjct: 405 RVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDTGRVLGFPYGF 464

Query: 472 VDRLCKLIPNDPAHPVSLQ---AIADDSRFREARL-----ADPSVDRLLEISQKLEGLYR 523
           VD + KL+PN     ++L+       DS    A L     ++  V  L++++++LE L R
Sbjct: 465 VDGVAKLVPN--ILGITLKDAMGEGKDSEMASAELIQRYGSEDDVRDLIDLARQLEDLTR 522

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTL 579
           +A  HA G+VI   PL    P++ +   D     PVTQF+   +E+ GL+KFDFLGL+TL
Sbjct: 523 NAGKHAGGVVIAPTPLHTFCPLFAEHDHDGLGRNPVTQFDKNDVEEVGLVKFDFLGLRTL 582

Query: 580 TLLQKSLDFLAQR----GVK-VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQALE 633
           T++  ++  + +R    G+  +D++ +P DD  TY  +   G  G +FQ ESSGMR+ L+
Sbjct: 583 TIIDWAVKAINRRHERAGIPPLDIAALPLDDAATYKDIFASGNTGAVFQFESSGMRRLLK 642

Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
             +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +L +T G+++YQE
Sbjct: 643 DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEAILADTYGIMVYQE 702

Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
           QVMQ+AQ++ GYSL  AD+LRRAMGKKI  EM K +E F  GA++ G+ +  A  IF+L+
Sbjct: 703 QVMQMAQIVGGYSLGGADLLRRAMGKKIPAEMAKHREMFREGAARGGVDEKKADEIFDLM 762

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
            KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+M+ +MDN +K+  F  +AR   
Sbjct: 763 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATMSSDMDNTDKVVGFLVEARNLG 822

Query: 814 IQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSR 871
           + I+PP+VN +P +   V  + I Y L AIKGVG      I+ E  A   +  L DFC R
Sbjct: 823 LAILPPTVNDSPYMFEAVTADTIRYGLGAIKGVGRGLCEAIVAEREAGGDYRDLLDFCRR 882

Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
           VDS KLNRR LE++V AGALD  G +R  L+  L  + K    + K       ++F    
Sbjct: 883 VDSTKLNRRALEAMVNAGALDALGRNRATLMLQLPEVLKATDQMAKEAAAGQTSLFGMPS 942

Query: 932 GTFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILRKM 978
                 + L+        +R   + E+  LG Y SGHP D Y+  +R +
Sbjct: 943 ADAGPSMQLDLPECAEWPLRQVLDGERETLGHYLSGHPFDPYREDVRGL 991


>gi|307257156|ref|ZP_07538928.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 10 str. D13039]
 gi|306864318|gb|EFM96229.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 10 str. D13039]
          Length = 1158

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1059 (39%), Positives = 622/1059 (58%), Gaps = 72/1059 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  +A  +G++PI
Sbjct: 6    FVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKPI 65

Query: 71   IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IG  + +    D +D  ++T              LL     GY  +  L+S+ Y   QG 
Sbjct: 66   IGADIFVRPEPDSEDFFELT--------------LLAKNNTGYHNITLLLSKAY--QQGY 109

Query: 127  QSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                +   +WL E+  EG+I+L+G  +G + +A    +   A++ +  +++ F +  Y+ 
Sbjct: 110  VEFPLVEKAWLAEL-NEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPNHYYLA 168

Query: 186  LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  +    
Sbjct: 169  LCRTSRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPK 228

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP+  +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++    LP F   +    
Sbjct: 229  RPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTGDL--- 285

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLIV
Sbjct: 286  --STEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIV 343

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 344  MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 403

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KLIP
Sbjct: 404  DFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIP 463

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 464  PDPGMTLA-KAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAIT 522

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR  +     
Sbjct: 523  DFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEP 582

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+
Sbjct: 583  VRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPL 642

Query: 656  DNIVVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ++ +V N  +RK+G E++          S+ P++DP    T GVI+YQEQVMQIAQ+L+G
Sbjct: 643  ESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDP----TYGVIVYQEQVMQIAQVLAG 698

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            Y+L  AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNKS
Sbjct: 699  YTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKS 758

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+ 
Sbjct: 759  HSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSG 818

Query: 825  CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVL 882
               F V +   I Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR  
Sbjct: 819  KHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTF 878

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E L+ +GA D  G  R  L+++L++  K         +++H  + A  +      +T   
Sbjct: 879  EGLIMSGAFDKLGPHRAALMKNLEDALK--------ASDQHSKMEALGQSDMFGVLTETP 930

Query: 943  FSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
              V+N+             E E+  LG Y SGHP+  +   L         E   T RG 
Sbjct: 931  EEVQNAYANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQ 990

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +A +++  +   T++GSR+G  T  + + + +   F
Sbjct: 991  VVTVAGIIMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|206602357|gb|EDZ38838.1| DNA polymerase III, alpha subunit [Leptospirillum sp. Group II '5-way
            CG']
          Length = 1201

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1048 (40%), Positives = 619/1048 (59%), Gaps = 27/1048 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL VH+ YSLL+GA  ++ ++ K  A+  PAIA+TD  NLF A+EF Q A  
Sbjct: 1    MSSTDQFVHLHVHTQYSLLDGANKIDPLIRKARAENMPAIAMTDHGNLFGAIEFFQTAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN---------QGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
             G++PIIGC++ I  +     ++         QG+        ++LL     GY+ L+++
Sbjct: 61   HGVKPIIGCEVYITPRSRFDRSDLYFGGDGPHQGRKINNASFHLILLAENDTGYRNLLKI 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L +      RI L  L     EGLI L+G   G I        +  A      F+
Sbjct: 121  VSLSHL-EGFYYRPRIDLELLSRY-HEGLIALSGCLKGQISYMLTRGDTDRAYATAGLFR 178

Query: 176  KLFGDRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++FG   Y    +  G +  R    +++ L+    +PLVATN+  +L  ED   HD+L+ 
Sbjct: 179  EIFGPENYFFEVQANGLEDQRIANREIIGLSKKLSIPLVATNDCHYLEREDSVPHDILLC 238

Query: 234  VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +     +    R R   D  YLK   EM+  F +LPEA+ENT+ IA R    + +    +
Sbjct: 239  LQTGKTLEDPARLRFGSDEFYLKTPREMIRSFEELPEAIENTLRIAERIDVSIDLQTTHM 298

Query: 293  PRFIEKECDDIQKEEEN--EL-RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
            P +     D+IQ +     EL    +  GL+ R  + A +       Y +RL+ E+ VI 
Sbjct: 299  PSY---RLDEIQGQTTTVPELFVRTSREGLDARFLENAFSDAEKTL-YLERLEREIQVIQ 354

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M + GYFLIV DFI+ A++  IPVGPGRGS AGSV A++L IT+IDP+RF LLFERFLN
Sbjct: 355  KMGYEGYFLIVWDFIRKAREMGIPVGPGRGSAAGSVVAWSLRITNIDPIRFGLLFERFLN 414

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+S+PD D+DFC +RR EVI+YV ++YG +RVA I TFG++ AK ++RDVGR L M Y
Sbjct: 415  PERVSLPDIDVDFCMNRRGEVIQYVVDRYGMDRVAMIATFGTMGAKGSIRDVGRVLGMTY 474

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            ++VDR+ K+IPN     +  +A+ ++   R     DP ++ L  +S+KLEG+ RH+S HA
Sbjct: 475  AEVDRVAKMIPNSLDMTLE-KALEENPDLRSLLEKDPRMEELFSLSRKLEGITRHSSIHA 533

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            AG+VI   PL + VP+ +    ++ VTQF    +EK GL+KFDFLGL TLTL+  + + +
Sbjct: 534  AGVVISREPLLEHVPLMKGANGEI-VTQFTKDDVEKVGLVKFDFLGLTTLTLIHGAENRI 592

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                       IP DD  TY LL+   TLGIFQLES GM   +  MQP+  ED+IAL++L
Sbjct: 593  RAHTPDFSADRIPLDDPRTYRLLSEGKTLGIFQLESRGMTDLIMKMQPETFEDLIALLAL 652

Query: 650  YRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            YRPGPI++ +V  +  RK    +I    P ++P+L+ET GVI+YQEQVMQIA +L+G+SL
Sbjct: 653  YRPGPINSGMVDDFIKRKKNPREIRYELPELEPVLRETYGVIVYQEQVMQIANVLAGFSL 712

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             EAD+LRRAMGKK  EEM K +++F+ GA + G  K  A ++FEL+A FA YGFNKSH+A
Sbjct: 713  GEADLLRRAMGKKKPEEMAKMQDKFVEGAVRKGFPKEKATHVFELMAYFAGYGFNKSHSA 772

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA+ISYQTA++KTHYP+E  AA +T  +D+ EKI  F   A+   I+++ P +N    D
Sbjct: 773  AYALISYQTAYLKTHYPLELWAALLTNALDDTEKIGVFLAGAKDMGIEVLAPDINQSEFD 832

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F +   +RI + L A+K VG      I+EA A D PF    DF  R+  KK+NRRV+E+L
Sbjct: 833  FAILPGSRILFGLGAVKNVGKQAVDCILEARAQDGPFTDFPDFLKRIVGKKVNRRVIEAL 892

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + AGA    G  R   ++SLD++  +A+  +  + +  +++F+ ++G  S    L +   
Sbjct: 893  IRAGAFRSLGIRRAVAMESLDDLLAWAEKQKSGKGSMQKSLFSEDQGGRSFGPPLREVPE 952

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +  +    E+  LGFY + HP+  Y  +L K+  +      A   G  +R+ A+V + +
Sbjct: 953  WDERMLLREEKNALGFYLTSHPMARYADLLLKLDTRSTRSLEAISEGETVRVFAVVSALR 1012

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + KT+KG ++  +T  +     EA  FP
Sbjct: 1013 EVKTKKGDKMAQLTLLDMEGTIEAVLFP 1040


>gi|322514110|ref|ZP_08067180.1| DNA-directed DNA polymerase III alpha subunit [Actinobacillus ureae
            ATCC 25976]
 gi|322120040|gb|EFX92016.1| DNA-directed DNA polymerase III alpha subunit [Actinobacillus ureae
            ATCC 25976]
          Length = 1158

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1055 (39%), Positives = 622/1055 (58%), Gaps = 64/1055 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  +A  +G++PI
Sbjct: 6    FVHLKVHSDFSMINGLAKVKPLVKTAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKPI 65

Query: 71   IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IG  + +    D +D  ++T              LL     GY  +  L+S+ Y   QG 
Sbjct: 66   IGADIFVRPEPDSEDFFELT--------------LLAKNNTGYHNITLLLSKAY--QQGY 109

Query: 127  QSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                +   +WL E+  EG+I+L+GG +G + +A    +   A++ +  +++ F +  Y++
Sbjct: 110  VEFPVVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENEAEADELISFYQQYFPNHYYLS 168

Query: 186  LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  +    
Sbjct: 169  LCRTGRMDEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPK 228

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP+  +P  + ++  EM ++F+DLP+A+ENT++IA RC+  +++    LP F   +    
Sbjct: 229  RPKKYSPQQHFRSEQEMCTLFADLPQAVENTLQIAMRCNVTVRLGEYFLPNFPTGDLS-- 286

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLIV
Sbjct: 287  ---TEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIV 343

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 344  MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 403

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KLIP
Sbjct: 404  DFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIP 463

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 464  PDPGMTLA-KAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAIT 522

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR  +     
Sbjct: 523  DFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEP 582

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+
Sbjct: 583  VRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPL 642

Query: 656  DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            ++ +V N  +RK+G E++        H  + P+L  T GVI+YQEQVMQIAQ+L+GY+L 
Sbjct: 643  ESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILAPTYGVIVYQEQVMQIAQVLAGYTLG 702

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 703  GADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSAA 762

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+    F
Sbjct: 763  YALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHRF 822

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V +   I Y L AIKGVG      I+EA   D  F  L    +RVD KK+NRR  ESL+
Sbjct: 823  SVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFYLTARVDLKKINRRTFESLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             +GA D  G  R  L+++L++  K         +++H  + A  +      +T     V+
Sbjct: 883  MSGAFDKLGPHRAALMKNLEDALK--------ASDQHSKMEALGQSDMFGVLTETPEEVQ 934

Query: 947  NSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
            N+             E E+  LG Y SGHP+  +   L         E   T RG  + +
Sbjct: 935  NAYANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTV 994

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A +++  +   T++GSR+G  T  + + + +   F
Sbjct: 995  AGIIMGSRIAITKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|116748665|ref|YP_845352.1| DNA polymerase III subunit alpha [Syntrophobacter fumaroxidans MPOB]
 gi|116697729|gb|ABK16917.1| DNA polymerase III, alpha subunit [Syntrophobacter fumaroxidans MPOB]
          Length = 1164

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1032 (40%), Positives = 619/1032 (59%), Gaps = 30/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL VH+ YSLL+GA+ L ++++   + + PA+ +TD  N+F ALEF +KA AAGI+P
Sbjct: 3    AFVHLHVHTQYSLLDGAIRLTDLIETARSMEMPAVTMTDHGNMFGALEFYEKAKAAGIRP 62

Query: 70   IIGCQLDIDMQD----NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            IIGC++ +  +     + +    G         +VLL   A GYQ L++LVS  YL +  
Sbjct: 63   IIGCEVYLAPRSRHDRHGRAEGSGTGEEDRNYHLVLLAKDATGYQNLMKLVSAGYL-EGF 121

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184
                RI    L +   EGLI L+    G +      N    A      +  + G D  Y+
Sbjct: 122  YYKPRIDKEILLQ-HHEGLIGLSSCLKGEVATLLSRNQESAARDAAREYAGILGPDHFYL 180

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ +   ++ +   +++ +     LPLVATN+  +L + D  AH++L+ +     V  +
Sbjct: 181  ELQANGMPEQAKVNERLIVMGKELGLPLVATNDCHYLRKSDARAHEILLCIQTGKTVLDE 240

Query: 244  DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILPRFIEKE 299
             R +   D  Y K+  EM   F+ +PEALEN+V IA RC   L++   H P+ P      
Sbjct: 241  KRMKFQTDQLYFKSPEEMAREFAHVPEALENSVAIAERCRLELKLGDYHFPVFPL----- 295

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIA-KGYHAQD---YRQRLDFELNVIARMKFSG 355
              D  +  E++    A+ G   RL +      G+  QD   Y +RL  EL VI  M F+ 
Sbjct: 296  --DEGESVEDKFEKTALEGFRRRLRELEKRRSGFSEQDRGEYEERLRSELAVIREMGFAA 353

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DFI +AK + IPVGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+R+SM
Sbjct: 354  YFLIVGDFINYAKSHGIPVGPGRGSAAGSLVAYAMNITDLDPIEHGLIFERFLNPERISM 413

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DFC   R+EV  YV  KYG  RVAQI TFG++QA+A +RDVGRAL MPY++VDR+
Sbjct: 414  PDIDVDFCIRGREEVFNYVSEKYGKNRVAQITTFGTMQARAVIRDVGRALAMPYNEVDRI 473

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KLIP+     +  +A   + R  E +  DP +  L EI+  LEGL RHASTHAAG+V+ 
Sbjct: 474  AKLIPSSLGMTLE-KAFQAEPRLAEQQREDPQIRELFEIAFALEGLTRHASTHAAGVVMA 532

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
            DRP+ + +P+Y     ++ VTQ+ MK++E+AGLIKFDFLGL+ LT++  ++  + +  G+
Sbjct: 533  DRPIVEYMPLYLGQDGEV-VTQYPMKYVERAGLIKFDFLGLRNLTVIDDAVRLIRETHGL 591

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            ++D+  +P DD +TY LL+   T G+FQLESSGMR  L  ++P+   DI+ALV+LYRPGP
Sbjct: 592  ELDMLALPLDDRDTYALLSRADTTGVFQLESSGMRNILARLKPENFADIVALVALYRPGP 651

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +++ +V  Y   K+G+ +I     ++ P+L+ T GVI+YQEQVM+IA +++ Y+L EADV
Sbjct: 652  LESGMVELYIQGKHGQIEITYDPEILRPILEPTYGVILYQEQVMKIASVMASYTLGEADV 711

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  E M  Q+ RF+ G+ KNGI    A +IF+L+ KFA YGFNKSH+AAYA++
Sbjct: 712  LRRAMGKKNAEAMRDQRARFVEGSRKNGIPLAKANHIFDLMEKFAGYGFNKSHSAAYALV 771

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTA++KTHY VEF+AA +   + + +++ +   + R+  I I+PP VN    DF V  
Sbjct: 772  AYQTAYLKTHYLVEFMAALLNSFLSSSDQVVRLISECREKGIDILPPDVNASSRDFTVVG 831

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             +I + L A+K VG      I+    ++ PF S+ DFC RVD++++NRRVLE LV  GA 
Sbjct: 832  GKIRFGLGAVKNVGEAAIEVILNTRVERGPFKSIHDFCLRVDTQRVNRRVLEQLVKCGAF 891

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-TFSDKITLEKFSVENSSV 950
            D     R  ++ +LD+    AQ V+++R +   N+F   K  T +    L +    +   
Sbjct: 892  DSIHSCRAGVMAALDDALDKAQAVQRDRQSGQINMFDLLKPRTKAGASALPEVPEWDGRQ 951

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
              + E+  LGFY SGHPLD Y   + ++     +       G  + L  M+   ++  T+
Sbjct: 952  TLQFEKEALGFYISGHPLDSYAAQISQLCTADTQAVKERKEGAEVILCGMISIVKELTTK 1011

Query: 1011 KGSRIGWVTFSE 1022
            KG R+ ++   +
Sbjct: 1012 KGDRMAFLAIED 1023


>gi|283850843|ref|ZP_06368129.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. FW1012B]
 gi|283573766|gb|EFC21740.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. FW1012B]
          Length = 1153

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1046 (41%), Positives = 618/1046 (59%), Gaps = 51/1046 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YSLL+GA+ + +++   A+   PA AITD  NL  AL F   A  AGI+PI
Sbjct: 4    FVHLHCHTEYSLLDGAIRIGDLVKTAASFGSPAAAITDHGNLHGALIFYDYAKKAGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +        +   + P      +VLL     GY+ L++LV+  +  +      R
Sbjct: 64   IGCEVYVTAA-----SRHDRDPRNPRYHLVLLAQNLAGYKNLLKLVTLGHT-EGMYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    L + G EGLI L+    G I++         A      +  LF DR Y  +Q + 
Sbjct: 118  VDKELLGKYG-EGLIALSACLKGEINQRLLKEGKDQAVACAREYMALFPDRFYFEIQANG 176

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              ++   +  ++ L+   ++PLVATN+  +L  ED EAHDVL+ +  +  V    R R  
Sbjct: 177  IPEQQTVNDFLIDLSDDLKVPLVATNDCHYLRAEDAEAHDVLLCIQTAACVDDAKRMRFT 236

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILPRFIEKECDDIQK 305
            T D Y ++  EM   F+ +P+AL NT EIA R    L+    H P+      K  DD+  
Sbjct: 237  TKDLYYRSPDEMAEAFAHVPQALANTCEIAERVDLSLKFGDYHFPVYKTPPGKSLDDV-- 294

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 + + A  GL  RLA+   A+    + Y  RL+ EL+VI +M F GYFLIV DFI 
Sbjct: 295  -----MADMARQGLRDRLAKMPDAE---PKKYWDRLELELDVIKQMGFPGYFLIVQDFIN 346

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK + IPVGPGRGS AGS+ AYAL IT++DPL + LLFERFLN +R+SMPD D+DFC+ 
Sbjct: 347  WAKDHGIPVGPGRGSAAGSLVAYALRITNLDPLPYDLLFERFLNIERVSMPDIDVDFCER 406

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVIRYV  +YG   VAQI TFG+++AK  +RDVGRAL M + + DR+ KLIP++   
Sbjct: 407  RRYEVIRYVTERYGENAVAQITTFGTMKAKGVVRDVGRALGMTFGETDRIAKLIPDE--- 463

Query: 486  PVSLQAIADDSRFREARL-----ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
               L+   D +  RE  L      DP V  L++IS++LEGL RHASTHAAG+V+ D  ++
Sbjct: 464  ---LKMTIDKALEREPELKVLMRTDPRVGHLIDISKRLEGLARHASTHAAGVVVSDTAMT 520

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLS 599
            + VP+Y+  +++  VTQ++MK +EKAGL+KFDFLGLKT+T++  +L  +   GV   DL 
Sbjct: 521  EYVPLYKG-KNNETVTQWDMKRVEKAGLVKFDFLGLKTMTVIDDALKIIEGMGVTPPDLD 579

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +PF D +TY L     T GIFQ+ES GMR+ L  ++P+C ED+IA+++LYRPGP+ + +
Sbjct: 580  TLPFTDEKTYELFAKGDTDGIFQVESQGMRKYLRMLRPNCFEDLIAMLALYRPGPLGSGM 639

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            V  +  RK+G++ +   HP ++  LK T GVI+YQEQVM+IAQ+L+ +SL   D+LRRAM
Sbjct: 640  VEQFIRRKHGEDPVEYPHPRLEETLKPTYGVIVYQEQVMKIAQVLASFSLGAGDLLRRAM 699

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM KQ++ F+ G + NGI    A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA
Sbjct: 700  GKKNAEEMGKQRQFFVDGCAGNGIEAKKANEIFDLMEKFAEYGFNKSHSAAYALISYHTA 759

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYPV F+AA MT +M+N +K+ ++    R  +I++ PP VN     F V DN+I Y
Sbjct: 760  YLKAHYPVAFMAALMTSDMENQDKLLQYIAACRDNDIELCPPDVNAGLPHFSVKDNKILY 819

Query: 838  SLAAIKGVG-TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAA+K +G    A  + E  A+ PF SL DF SRV+ +K+ +RV+E L+  GA D FG 
Sbjct: 820  GLAAVKNIGRDAVAEIVAEREANGPFTSLLDFTSRVNMRKVTKRVIEYLIKCGACDGFGC 879

Query: 897  SRMQLLQSLDNIQKYAQ--WVEKNRTNKHENIFAHEK-------GTFSDKITLEKFSVEN 947
            SR  L+  LD      Q    +KN           EK       G    + TL ++ +  
Sbjct: 880  SRAGLVAGLDQAAALGQKRAADKNDGRLSLMTLMPEKPKPTVGLGLSCPEATLPEW-LHE 938

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              + FE E   LGFY + HPL  Y+  LR M      +      G  +++A + VS ++ 
Sbjct: 939  EMMAFEKE--ALGFYLTSHPLLAYERDLRAMRTTTLAQCAGIEPGVEVKVACICVSTKEI 996

Query: 1008 KTRKGSRIGWVTFSEP-AKEYEANFF 1032
             T+KG ++ +    +    E EA  F
Sbjct: 997  ITKKGQKMAFCKLEDHLGGEAEAVVF 1022


>gi|291326493|ref|ZP_06124738.2| DNA polymerase III, alpha subunit [Providencia rettgeri DSM 1131]
 gi|291314103|gb|EFE54556.1| DNA polymerase III, alpha subunit [Providencia rettgeri DSM 1131]
          Length = 1144

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1035 (40%), Positives = 615/1035 (59%), Gaps = 44/1035 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K+A+   PA AITD  NL   + F   A  AGI+PIIG    ++ + 
Sbjct: 1    MIDGLAKTGPLVKKVASMGMPAFAITDFTNLCGLVRFYGAAHGAGIKPIIGADFYVESE- 59

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
               + ++       +  + +L    EGYQ L  L+S  Y    G     I   WL +   
Sbjct: 60   --LLGDE-------ISHLTVLARNNEGYQNLTLLISEAYQKGYGAVGPTIKREWLAK-HK 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            +GLI+L+GG  G + +     +  + ++ L  ++  F D  Y+ L R  R  +       
Sbjct: 110  DGLILLSGGRKGDVGQFLLRGNQSLVDECLAFYETHFPDSYYLELVRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     ++   RP+  +P  YL++  E
Sbjct: 170  VELATKKGLPVVATNDVCFIESSDFDAHEIRVAIHDGFTLADPKRPKNYSPQQYLRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEALEN+VEIA+RC+  +++    LP+F      D++ E+   +R+K   GL
Sbjct: 230  MCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQF---PTGDMKTEDFLVMRSKE--GL 284

Query: 320  EVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL      +   A+   +Y +RLD ELNVI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLEFLFPDEKIRAERRPEYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     VD++ IP  D +++ +
Sbjct: 524  QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKNLEPVDIAAIPLHDQKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V D   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  + D C+RVD KK+NRRV+E L+ AGA D  G  R  L+
Sbjct: 824  GVGEGPIEAIVEARQQGGIFKEIFDLCARVDIKKINRRVMEKLIMAGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             SL++  K A    K       ++F       +   S   ++ K+      V  + E+  
Sbjct: 884  SSLEDALKAADQHAKAEAIGQADMFGVLAEAPEQVESSYASVPKWP---EQVVLDGERET 940

Query: 959  LGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            LG Y +GHP+  Y   I R       ++   T RG    +  +V+S +   T++G+RIG 
Sbjct: 941  LGLYLTGHPITRYLSEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRGNRIGI 1000

Query: 1018 VTFSEPAKEYEANFF 1032
             T  + +   +   F
Sbjct: 1001 CTLDDRSGRLDIMLF 1015


>gi|218778784|ref|YP_002430102.1| DNA polymerase III, alpha subunit [Desulfatibacillum alkenivorans
            AK-01]
 gi|218760168|gb|ACL02634.1| DNA polymerase III, alpha subunit [Desulfatibacillum alkenivorans
            AK-01]
          Length = 1168

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1039 (40%), Positives = 619/1039 (59%), Gaps = 36/1039 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA+ L+ ++++       A AITD   +F  LEF +KA +  I+PI
Sbjct: 4    FVHLHVHTQYSLLDGAIRLDALVNQCKEFGMDACAITDHGTMFGILEFYEKAKSKDIKPI 63

Query: 71   IGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IGC+  +    M+D   M    +        +VLL    +GY+ L     R+  L Q K 
Sbjct: 64   IGCECYVARKSMEDKTPMDKDNR-------HLVLLAENNQGYENL----CRLATLAQRKG 112

Query: 128  ---SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 RI    L+E  ++GLI L+    G I         ++AE+  L +K LFG D  Y
Sbjct: 113  FYYKPRIDKKALEE-HSKGLICLSACLHGEIPMYISDGQMKLAEESALYYKNLFGPDHFY 171

Query: 184  VNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q +   ++   +Q + +LA   ++PLV TN+  +L  +D +AH+VL+ +  +  +  
Sbjct: 172  LEIQNNGLPEQEEMNQKLAELAEKLDIPLVGTNDCHYLRAKDAKAHEVLLCIQTNKTIHD 231

Query: 243  KDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             +R +   D  YLK+  EM+  F   P A +NTV+IA  C+    +     P+F  +E  
Sbjct: 232  TNRFKFRTDQLYLKSPQEMIEYFKGFPGATDNTVKIAEMCNVEFDLSTFHFPQFPTEE-- 289

Query: 302  DIQKEEENELRNKAVAGLEVRL-AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
               K E   L      G   R+ A  A+      + Y +RL +EL VI  M F GYFLIV
Sbjct: 290  --GKTEAEILTQMTWDGFHKRMDAIKAVNPAVDEEKYLERLKYELGVIQDMGFPGYFLIV 347

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFIQW+K+N IPVGPGRGS AGS+ AYAL ITD+DPL   L+FERFLNP R SMPD D+
Sbjct: 348  SDFIQWSKRNGIPVGPGRGSAAGSLVAYALEITDLDPLEHKLIFERFLNPGRKSMPDIDV 407

Query: 421  DFCQDRRDEVIRYVQNKYGH-ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            DFC   R+    YV  KYG  + V+QI TFGS+ A+A +RDVGRA+ +P  +VD + KLI
Sbjct: 408  DFCILGRERTFNYVVEKYGGGDYVSQITTFGSMNARAVVRDVGRAMAIPLGEVDVIAKLI 467

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P  P   +  +A+  + +  E     P +  L+E++Q LEGL RHASTHAAG+VI D+PL
Sbjct: 468  PEAPKMTLK-KAMEQEPKLLEIMKDKPEIAELIEVAQVLEGLSRHASTHAAGVVIADKPL 526

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
             + +P+Y   + ++ VTQF+MK +EK GL+KFDFLGL+ LT++  ++  +  +G    DL
Sbjct: 527  VEYLPLYEGKKGEV-VTQFDMKRVEKIGLVKFDFLGLRNLTVIDNAIKLIEGQGKTPPDL 585

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +   D  TY+LL+   T G+FQLESSGM+  L  ++P+C ED++A+V+LYRPGP+++ 
Sbjct: 586  MHLDVTDKATYNLLSRGDTTGVFQLESSGMKDLLARLKPECFEDVVAVVALYRPGPLNSG 645

Query: 659  VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V  +  RK+G   +    P ++P+LK+T GVI+YQEQVMQIA  L+ YS+SEAD LR+A
Sbjct: 646  MVDDFVKRKHGDIPVTYALPELEPILKDTYGVIVYQEQVMQIAAALASYSMSEADDLRKA 705

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKKI E+M +Q+ RF+ G  +N +    A  +F L+ KF +YGFNKSH+AAYA++S+QT
Sbjct: 706  MGKKIAEKMAQQRIRFMDGCKENNVDLKKAEALFNLMEKFGEYGFNKSHSAAYALVSFQT 765

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++KTH+ VEF+A+ MT EMDN + + KF  + R  +I+++PP VNT  V F V + +I 
Sbjct: 766  AYLKTHFQVEFMASLMTSEMDNTDNVLKFMSECRDHDIEVLPPDVNTSSVSFTVLEGKIV 825

Query: 837  YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y +AAIKGVG      I+E   A+ PF+++ D C RVD +++N+RVLESLV AGA D  G
Sbjct: 826  YGMAAIKGVGQGAVEAIVEERKANGPFENIFDLCERVDLRRVNKRVLESLVKAGAFDSTG 885

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSVENSSVRFEN 954
              R QL+  L++   + Q + K + +    +F A E  T +    L      +  ++   
Sbjct: 886  AKRSQLMAVLESAIDHGQRISKEKNDPQMGLFGAIEMPTITP--ALPDIEEWDDQLKLSY 943

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LGF+ +GHPL  Y+ IL K               + +R+  M++S +   T+KG  
Sbjct: 944  EKEALGFFLTGHPLGKYEDILIKFANADTLTLPEMPDKSAVRVGGMILSTKNLVTKKGDP 1003

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + ++T  +     E   FP
Sbjct: 1004 MAFITLEDMKGSVEVVVFP 1022


>gi|220904502|ref|YP_002479814.1| DNA polymerase III, alpha subunit [Desulfovibrio desulfuricans subsp.
            desulfuricans str. ATCC 27774]
 gi|219868801|gb|ACL49136.1| DNA polymerase III, alpha subunit [Desulfovibrio desulfuricans subsp.
            desulfuricans str. ATCC 27774]
          Length = 1160

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1041 (40%), Positives = 620/1041 (59%), Gaps = 32/1041 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YSLL+GA+ + ++  +      PA AITD  NLF A  F Q     GI PI
Sbjct: 4    FVHLHCHTEYSLLDGAIRIKDLCARAKDFGMPACAITDHGNLFGAAYFYQGCKDFGINPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTV-PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
             GC++ +      K T+   +P       ++LL     GY  L++LVS  +L D      
Sbjct: 64   FGCEVYVCHDHTDKKTD---SPLARRRHHLILLAQNKTGYHNLVKLVSHGFL-DGFYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L++  +EGLI L+   +G I RA   +   +A K    +  ++ +R Y+ LQ +
Sbjct: 120  RVDKGLLRKY-SEGLICLSACIAGEIPRAILADDMDLARKLTHEYADIYPNRFYLELQSN 178

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +  + ++ LA T  LPLVATN+  +L+ +D EAH+VL+ +   T +    R + 
Sbjct: 179  GLKEQEKANAGLIDLAETCNLPLVATNDCHYLNADDAEAHEVLLCIQTQTTMDDPKRMQF 238

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + Y K+  EM   F  +PEAL NT  IA  C+  L       P +   E   +    
Sbjct: 239  GTHELYYKSIEEMEKSFGHVPEALANTARIAEACNVELDFGNHYFPVYQLPEGASM---- 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+E R  A  GLE RL         + Q YR RL +EL VI  M F  YFLIV +FI WA
Sbjct: 295  ESEFRRLAEEGLEKRLVNHPDRDQLNPQTYRDRLQYELRVILEMGFPSYFLIVQEFINWA 354

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N+IPVGPGRGS AGS+ A+AL IT++DP+ ++LLFERFLN +R+S+PD D+DFC+ RR
Sbjct: 355  KNNDIPVGPGRGSAAGSLVAWALRITNLDPIPYNLLFERFLNSERVSLPDIDVDFCERRR 414

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +VI+++   YG   VAQI TFG+++AK  +RDVGRAL M +++ DR+ KL+P D    +
Sbjct: 415  GDVIKHMVETYGEGSVAQITTFGTMKAKGVVRDVGRALGMSFAETDRIAKLVPADLKMTI 474

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +    +  L D  V  LL+ +++LEGL RHASTHAAG+V+ D+P+ + +P+Y 
Sbjct: 475  K-KALESEPELEKLYLEDQQVKHLLDTARRLEGLARHASTHAAGLVVSDKPMKEYLPLYL 533

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
              R +L VTQF+    EKAGL+KFDFLGLKT+TL+Q +LD ++ +G    +L  +P  D 
Sbjct: 534  GKRGEL-VTQFDGPMTEKAGLVKFDFLGLKTMTLIQDTLDNISLQGQAPPNLDNLPLTDA 592

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
            ETY L     T G+FQ+ESSGMRQ L  ++P C ED+IA+++LYRPGP+ + +V  +  R
Sbjct: 593  ETYELYARGETDGVFQVESSGMRQYLRMLRPTCFEDVIAMLALYRPGPLGSGMVDEFIKR 652

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+  ++  H  +   L++T GVI+YQEQVMQIAQ+++ Y+L  AD+LRRAMGKK  E 
Sbjct: 653  KHGQVPVIYPHESLTDCLRDTYGVIVYQEQVMQIAQIIASYTLGGADLLRRAMGKKKAEA 712

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M K++  F++GA KN IS+  A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K HY 
Sbjct: 713  MAKERVTFVAGAQKNNISEEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAYLKVHYK 772

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEF+AA +T EM N +K+ K+    +  +I ++ PSVN    +F   + ++ + L  IK 
Sbjct: 773  VEFMAALLTSEMGNQDKLLKYVSCCKDMDIDVVQPSVNRSQREFTAHEGKVVFGLGGIKN 832

Query: 845  VGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG    R I+EA   ++ F SL D C RV+ +K+ +RVLESL+  GA DCFG +R  +L 
Sbjct: 833  VGDEAIREIVEARQQEEEFASLFDLCCRVNLRKVTKRVLESLIKGGACDCFGVARAAMLA 892

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEK----------GTFSDKITLEKFSVENSSVRFE 953
            SLD +   AQ   K++++   ++ A             G    +    + + E+   +  
Sbjct: 893  SLDLVVARAQRKAKDKSSNQVSLLAMAPVAESAPQPGIGIDCAEAATPEMADED---KLR 949

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KG 1012
             E+  LGF+ + HPL  Y   +R++G+   E++     G  +R A +V S ++  T+ KG
Sbjct: 950  AEKDALGFFLTSHPLQPYVREIRRLGLTTLEDARDMFPGAEVRCAVLVTSVREVITKSKG 1009

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
             R+ +    +     E  FFP
Sbjct: 1010 ERMAFAAVEDLTGHAEVTFFP 1030


>gi|317052727|ref|YP_004113843.1| DNA polymerase III subunit alpha [Desulfurispirillum indicum S5]
 gi|316947811|gb|ADU67287.1| DNA polymerase III, alpha subunit [Desulfurispirillum indicum S5]
          Length = 1163

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1055 (40%), Positives = 632/1055 (59%), Gaps = 48/1055 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA+ +  ++ K      PA+A+TD  N+F A++F ++   AGI+P
Sbjct: 2    SFVHLHLHTMYSLLDGAIKIPELVKKAKEYGMPAVAMTDHGNMFGAVDFYKQCTKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +    +++     +  +     +VLL     GY+ LI +VS+ YL +      
Sbjct: 62   ILGCEVYVS-PGSMREKRNAEGVYEGAYHLVLLAENMTGYRNLIYMVSQGYL-EGFYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            RI    L+E  +EG+I L+    G +        ++ A +  L + ++FG+   ++ LQ 
Sbjct: 120  RIDKELLREC-SEGIIALSACLGGEVPNQLLAGDTEGARRSALEYLEIFGEGNFFLELQE 178

Query: 189  HRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            + G D  R    Q++ LA    +P+VATN+  +L+ ED +AHD+L+ +   +    + R 
Sbjct: 179  N-GMDDQRAVNRQLIALAEETGIPMVATNDCHYLNREDAKAHDILLCIQTQSNFDDEKRF 237

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R   D  Y K+   M   F  + +A+ NTV+IA RC+  L++    LP++      DI  
Sbjct: 238  RFDSDQLYFKSPETMHKDFGHIKDAIANTVKIAERCNVQLEMGKVYLPKY------DIPA 291

Query: 306  EE--ENELRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            E   E+ +   +  GL  R AQ   +   Y    Y +RL+ EL+VI  M F GYFLIVAD
Sbjct: 292  EHTLESYIGEVSRKGLLERFAQFDRLGLTYDRPAYEERLEIELDVINSMGFPGYFLIVAD 351

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW K  +IPVGPGRGS AGS+ AYAL ITDIDP+ ++LLFERFLNP+R+SMPD DIDF
Sbjct: 352  FIQWGKDQDIPVGPGRGSAAGSLVAYALKITDIDPIPYNLLFERFLNPERVSMPDIDIDF 411

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV+ KYG + V QI+T+ SLQAK  LRDV R + +PYS  D+L KL+PN 
Sbjct: 412  CMNRRGEVIDYVRKKYGDQNVCQIVTYASLQAKGVLRDVCRVMGLPYSDGDKLSKLVPNK 471

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +AI+ + + +EA  A P  + LL+ S  LEGL+R A  HAAGIVI D P+   
Sbjct: 472  LGITLD-EAISMEPKLKEAAAAMPHGENLLKYSLALEGLFRQAGMHAAGIVITDEPIYTY 530

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDLS 599
             P+ R    + PV QF+    E  GL+KFDFLGLKTLT++ ++  F+ Q      K D+S
Sbjct: 531  APLSRGPEGE-PVCQFDKDKAEDIGLVKFDFLGLKTLTVIDEACRFVQQTQKLPAKFDIS 589

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I  DD  TY LL +  + GIFQLES GMR  L  ++P   EDI+A+++LYRPGP+ + +
Sbjct: 590  AIAMDDQPTYDLLCSGKSAGIFQLESGGMRSLLTKLKPSNFEDIVAVLALYRPGPLGSGM 649

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            V  + +RK G+ +I+ + P ++P+LK+T GVI+YQEQVMQIA+ + GYSL  AD+LRRAM
Sbjct: 650  VDDFVDRKQGRSEILYLFPELEPILKDTYGVIVYQEQVMQIARTIGGYSLGAADLLRRAM 709

Query: 718  GKKIKEEMDKQKERF-------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            GKK +EEM KQKE F       + GA   G     A  +F+L+A FA YGFNKSH+AAYA
Sbjct: 710  GKKKEEEMVKQKEIFLHGDGDKVPGAKAMGFDLKKAEQVFDLMAYFAGYGFNKSHSAAYA 769

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +++YQTA++K HYP E +AA ++ EMDN +K+ +F  + +   +++ PP +N     F V
Sbjct: 770  LVAYQTAYLKAHYPSELMAALLSCEMDNTDKVVQFINECKSMGLEVHPPHINLSGHSFTV 829

Query: 831  GDN--RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             ++   I + L AIK VG+     I+ E   + PF SL DF  RVD + +N+RV+E+L+ 
Sbjct: 830  DEDGRSIIFGLTAIKNVGSKAVEAILQERQENGPFTSLYDFTERVDLRSVNKRVVENLIK 889

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITL--EKFS 944
             GA D    +R QL+ +LD+     Q ++K+R     ++F  E +   SD ++   E   
Sbjct: 890  CGAFDSVHANRRQLIGALDHAFSLGQTIQKDREAGQISLFEMEAQDDSSDDLSHHEEYPD 949

Query: 945  VE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI----RGNNIRLA 998
            VE  N++ R   E+  LGF+ SGHPL+ ++ +L     +GY   +A++    +   +R+A
Sbjct: 950  VEDWNTTTRVAFEKECLGFFVSGHPLEPFQSVL-----EGYTTPIASVLEAQKKGRVRIA 1004

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++ S Q K T+ G ++  +   +   + E   FP
Sbjct: 1005 GVLSSLQPKTTKAGKKMAIIVVEDQTAKLEIPIFP 1039


>gi|88706741|ref|ZP_01104443.1| DNA polymerase III alpha subunit [Congregibacter litoralis KT71]
 gi|88699062|gb|EAQ96179.1| DNA polymerase III alpha subunit [Congregibacter litoralis KT71]
          Length = 1168

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1029 (41%), Positives = 610/1029 (59%), Gaps = 45/1029 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS YSL +G + +  +  + A    PAIA+TD  N +  ++F + A  AGI+PI
Sbjct: 4    FVHLRVHSEYSLSDGLVRIKALAARTAELGMPAIAVTDVCNFYGLIKFHKAAVNAGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G   D+ + ++LK  +    P      + LLV  A GY  L  L+SR Y   Q  +  R
Sbjct: 64   FGA--DVWVTESLK--DDEAHP------LCLLVMNATGYLNLTRLLSRAYREGQTHEGPR 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            +   W+ E   EGL+ L+ G++G + +A   +   VA +RL    ++F  R Y+ L R  
Sbjct: 114  VLWDWVAE-SAEGLLALSCGAAGEVGQALVNDKPAVARQRLERCLEIFPGRFYLELHRTG 172

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  D       V LA  +  P+VATN+  F+   ++EAH+  + +A S V+    R R  
Sbjct: 173  RVGDEEHVHAAVALAEQYACPVVATNDVRFIDASEFEAHEARVCIAESRVLDDPRRQRRY 232

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            + + YL++  EM  +F D+PEALENTV IARRCS  +++    LP +   E   +    +
Sbjct: 233  SEEQYLRSVEEMQELFEDIPEALENTVAIARRCSMEIELGRVCLPDYPVPEGMTM----D 288

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFI 364
               R  +  GL+ RL    I +  +A+D    YR RLDFEL+ I  M F GYFLIV DFI
Sbjct: 289  AYFRELSHRGLDERLKTLQIHQRENAEDLERDYRARLDFELDTIIDMGFPGYFLIVMDFI 348

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK+  IPVGPGRGSGAGS+ AY L+ITD+DP+ + LLFERFLNP+R+SMPDFD+DFC 
Sbjct: 349  RWAKERGIPVGPGRGSGAGSLVAYCLSITDLDPMEYELLFERFLNPERVSMPDFDVDFCM 408

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDEVI YV   YG E V+QIITFG+L AKA +RDV R     Y   DRL K+IP +  
Sbjct: 409  ERRDEVIDYVAETYGREAVSQIITFGTLAAKAVVRDVARVQGKSYGLGDRLSKMIPFEVG 468

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  +   ++    D     + +++ +LEG+ R+   HA G+VI    L+    
Sbjct: 469  MTLE-KALEQEESLQQFLRDDSEAQEIWDMAVQLEGVTRNVGKHAGGVVIAPSELTDFSA 527

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLS 599
            +Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +   + +   +     +D++
Sbjct: 528  LYCDGEGAGLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWAQGMINEIRARNDEPPLDIN 587

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD  ++ LL +  T  +FQLES GM++ +  ++PDC EDIIALV+LYRPGP+ + +
Sbjct: 588  QIPLDDPASFDLLRSAETTAVFQLESRGMKELIARLRPDCFEDIIALVALYRPGPLQSGM 647

Query: 660  VYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            V N  +RK+G+EK+        H L+ P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+
Sbjct: 648  VDNFIDRKHGREKVSYPDADYQHELLKPVLEPTYGIILYQEQVMQIAQILAGYTLGGADL 707

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  EEM KQ+  F +GA+  G+   +A  +F+L+ KFA YGFNKSH+AAYA++
Sbjct: 708  LRRAMGKKKPEEMAKQRSVFAAGAASKGVDADLATKLFDLVEKFAGYGFNKSHSAAYALV 767

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQTAW+K HYP  F+AA M+ E+DN +KI  F ++ R+  + +  P VN     F V +
Sbjct: 768  SYQTAWLKAHYPAAFMAAVMSSELDNTDKIVVFIEECRRMGLTVRLPDVNEGRYMFTVSE 827

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I Y L AIKG+G      ++E+  AD PF  L DFC+R D +KLNR+ LE+LV +GA
Sbjct: 828  AGEIVYGLGAIKGLGEGPVSGLLESREADGPFRDLFDFCARTDPRKLNRKALEALVRSGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITLEKFS 944
             D  G  R  LL  +D+  + A+    NR     ++F      + E+G      +L    
Sbjct: 888  FDSLGTERWVLLAGIDDALRAAEQNAANRDAGMVDLFGETVEASQEQG--DPYGSLRHVR 945

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                  R + E+  LG Y +GHP+D  +  LR+   +   +     RG N R+A +++S 
Sbjct: 946  PWTDRERLQGERDTLGLYVTGHPIDACEDELRRFAPQRLADLRTDSRG-NCRVAGLILSM 1004

Query: 1005 QQKKTRKGS 1013
            +  K+ +G+
Sbjct: 1005 RAMKSARGA 1013


>gi|165976527|ref|YP_001652120.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 3 str. JL03]
 gi|165876628|gb|ABY69676.1| DNA polymerase III alpha subunit [Actinobacillus pleuropneumoniae
            serovar 3 str. JL03]
          Length = 1158

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1059 (39%), Positives = 622/1059 (58%), Gaps = 72/1059 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  +A  +G++PI
Sbjct: 6    FVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKPI 65

Query: 71   IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IG  + +    D +D  ++T              LL     GY  +  L+S+ Y   QG 
Sbjct: 66   IGADIFVRPEPDSEDFFELT--------------LLAKNNTGYHNITLLLSKAY--QQGY 109

Query: 127  QSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                +   +WL E+  EG+I+L+G  +G + +A    +   A++ +  +++ F +  Y+ 
Sbjct: 110  VEFPLVEKAWLAEL-NEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPNHYYLA 168

Query: 186  LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  +    
Sbjct: 169  LCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPK 228

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP+  +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++    LP F   +    
Sbjct: 229  RPKKYSPQQYFRSEQEMCALFADLPQAIENTVQIAMRCNVTVRLGEYFLPNFPTGDL--- 285

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLIV
Sbjct: 286  --STEDFLVKKSREGLEERLEFLFPDPEERKNKRSIYDERLQVELDVINQMGFPGYFLIV 343

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 344  MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 403

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KLIP
Sbjct: 404  DFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIP 463

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 464  PDPGMTLA-KAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAIT 522

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR  +     
Sbjct: 523  DFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEP 582

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+
Sbjct: 583  VRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPL 642

Query: 656  DNIVVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ++ +V N  +RK+G E++          S+ P++DP    T GVI+YQEQVMQIAQ+L+G
Sbjct: 643  ESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDP----TYGVIVYQEQVMQIAQVLAG 698

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            Y+L  AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNKS
Sbjct: 699  YTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKS 758

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+ 
Sbjct: 759  HSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSG 818

Query: 825  CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVL 882
               F V +   I Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR  
Sbjct: 819  KHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTF 878

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E L+ +GA D  G  R  L+++L++  K         +++H  + A  +      +T   
Sbjct: 879  EGLIMSGAFDKLGPHRAALMKNLEDALK--------ASDQHSKMEALGQSDMFGVLTETP 930

Query: 943  FSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
              V+N+             E E+  LG Y SGHP+  +   L         E   T RG 
Sbjct: 931  EEVQNAYANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQ 990

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +A +++  +   T++GSR+G  T  + + + +   F
Sbjct: 991  VVTVAGIIMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|303250150|ref|ZP_07336352.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
 gi|307252740|ref|ZP_07534631.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
 gi|302651213|gb|EFL81367.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
 gi|306859772|gb|EFM91794.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
          Length = 1158

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1059 (39%), Positives = 622/1059 (58%), Gaps = 72/1059 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  +A  +G++PI
Sbjct: 6    FVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKPI 65

Query: 71   IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IG  + +    D +D  ++T              LL     GY  +  L+S+ Y   QG 
Sbjct: 66   IGADIFVRPEPDSEDFFELT--------------LLAKNNTGYHNITLLLSKAY--QQGY 109

Query: 127  QSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                +   +WL E+  EG+I+L+G  +G + +A    +   A++ +  +++ F +  Y+ 
Sbjct: 110  VEFPLVEKAWLAEL-NEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPNHYYLA 168

Query: 186  LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  +    
Sbjct: 169  LCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPK 228

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP+  +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++    LP F   +    
Sbjct: 229  RPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTGDL--- 285

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLIV
Sbjct: 286  --STEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIV 343

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 344  MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 403

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KLIP
Sbjct: 404  DFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIP 463

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 464  PDPGMTLA-KAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAIT 522

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR  +     
Sbjct: 523  DFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEP 582

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+
Sbjct: 583  VRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPL 642

Query: 656  DNIVVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ++ +V N  +RK+G E++          S+ P++DP    T GVI+YQEQVMQIAQ+L+G
Sbjct: 643  ESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDP----TYGVIVYQEQVMQIAQVLAG 698

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            Y+L  AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNKS
Sbjct: 699  YTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKS 758

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+ 
Sbjct: 759  HSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSG 818

Query: 825  CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVL 882
               F V +   I Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR  
Sbjct: 819  KHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTF 878

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E L+ +GA D  G  R  L+++L++  K         +++H  + A  +      +T   
Sbjct: 879  EGLIMSGAFDKLGPHRAALMKNLEDALK--------ASDQHSKMEALGQSDMFGVLTETP 930

Query: 943  FSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
              V+N+             E E+  LG Y SGHP+  +   L         E   T RG 
Sbjct: 931  EEVQNAYANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQ 990

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +A +++  +   T++GSR+G  T  + + + +   F
Sbjct: 991  VVTVAGIIMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|326316817|ref|YP_004234489.1| DNA polymerase III subunit alpha [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373653|gb|ADX45922.1| DNA polymerase III, alpha subunit [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 1181

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/1002 (40%), Positives = 592/1002 (59%), Gaps = 50/1002 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL++H+ +S+++G   ++ +    + D QPA+AITD +NLF A++F ++A   G++P+
Sbjct: 2   FVHLRLHTEFSVVDGTTRIDEVAKAASKDGQPALAITDLHNLFGAIKFYKEARGKGVKPV 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G ++ I+ +        G  P      I+LL    +GY  L E+++R +  +  K    
Sbjct: 62  LGAEVSIEPE------TAGNPP----GRILLLAQGRQGYLNLCEMLARAWTRNVVKNVPL 111

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
               WL+E+G + LI L+G  +GP+ +AF       A +  L    LF  R Y+ LQR  
Sbjct: 112 CTWEWLEELGGD-LIALSGAQAGPVGQAFTRGDDAGAARVALRLAGLFPHRFYLELQRAG 170

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
           R  D  +    VQLA    LP+VAT  + FL+ +DYEAH+  + +A   +++   R  R 
Sbjct: 171 RPEDESQVVAAVQLAARLNLPVVATQPTQFLTADDYEAHEARVCIAEGEILANPRRVRRF 230

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
           T + Y K+ ++M ++F+D+P A+ NT+EIARRCS  L +  P LP F       I    +
Sbjct: 231 TREQYFKSSAQMEALFADVPTAIANTLEIARRCSLTLVLGKPRLPDFPTPNGMPI----D 286

Query: 309 NELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              R  +  GLE RL    +    +      Y +RL+FELN I +M F GYFLIV DFIQ
Sbjct: 287 EYFRYASFEGLEERLKHLFRNEAERDKQRPRYVERLEFELNTILKMGFPGYFLIVGDFIQ 346

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           WAK+N  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 347 WAKENGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQS 406

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP-- 483
            RD VI YV++KYG   V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P  
Sbjct: 407 NRDRVIDYVKDKYGKNAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGM 466

Query: 484 ----AHPVSLQAIADDSRFR--------EARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
               A+P  ++   D + +         E    +  V  ++E++QKLEG+ R+   HA G
Sbjct: 467 SYTLAYPPEVKKEGDKNNYALELEPMLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHAGG 526

Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
           ++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F+ +
Sbjct: 527 VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMK 586

Query: 592 RGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
           R    +      IP DD  TY L +   T  +FQ ES GM+  L+  +P  +ED+IAL +
Sbjct: 587 RHKGQENFAFENIPLDDAPTYRLFSEGKTEAVFQFESRGMQGMLKEARPSRLEDLIALNA 646

Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
           LYRPGP+D I  + NRK+GKE +   HPL++P+L ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 647 LYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLG 706

Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD+LRRAMGKK  EEM + +E F  GA++ GI +  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 707 GADMLRRAMGKKKAEEMAEHREIFRKGAAEKGIGQDKADEVFDLMEKFAGYGFNKSHAAA 766

Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
           Y++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA +  +   PP VN     F
Sbjct: 767 YSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLYEDAMKMGLTFEPPDVNRGMYRF 826

Query: 829 K-VGDNRIYYSLAAIKGVGTTTARHIMEASADK----------PFDSLEDFCSRVDSKKL 877
           + V D  I Y L A+KG G      I+ A   +          PF SL DFC+RVD  +L
Sbjct: 827 EPVTDKVIRYGLGAVKGTGQQAIEAIIAAREGRGVGPRGDTKGPFASLFDFCARVDRTRL 886

Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV--EKNRTNKHENIFAHEKGTFS 935
           N+R LE+L+ AGA D    +R  L+ S+D    +A  +    N+    + +     G+ +
Sbjct: 887 NKRTLEALIKAGAFDAIEMNRASLVASIDRAFDFANSLIANANQGGLFDMMGDDSHGSST 946

Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
               L +        R   E+  +GFY SGH  D  +  +R+
Sbjct: 947 QDPALVEMLPWGVKERLTQEKTAVGFYLSGHLFDEVEKEVRR 988


>gi|167624880|ref|YP_001675174.1| DNA polymerase III subunit alpha [Shewanella halifaxensis HAW-EB4]
 gi|167354902|gb|ABZ77515.1| DNA polymerase III, alpha subunit [Shewanella halifaxensis HAW-EB4]
          Length = 1177

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1049 (39%), Positives = 606/1049 (57%), Gaps = 39/1049 (3%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            ++   P FVHL+VHS +S+ +G   +  I+ K+A    PA+A+TD  N+   ++F +   
Sbjct: 20   HIMSDPRFVHLRVHSDFSMSDGLSKVKPIIAKVAELGMPAVALTDQTNMCGLVKFYEACH 79

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTP-FPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              G++PIIG    +            K P F    SI  L    +GY  L  L+S  YL 
Sbjct: 80   GNGVKPIIGTDFWV------------KVPGFDEFCSITALAMDNKGYSNLTLLISDAYLR 127

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                    I   WL +   EGLI+L+G   G + RA    +    +  +  +K  F DR 
Sbjct: 128  GNINDKAVIDQEWLVKY-NEGLIILSGAKDGDVGRALLKENQNQVDSLIDFYKSNFPDRY 186

Query: 183  YVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ L R    D  R   + V LA   +LP+VATN  +F   E ++AH++ +A+     ++
Sbjct: 187  YLELLRTGRPDEERYLHMAVALAEQKDLPVVATNQVVFNKPEQFDAHEIRVAIYDGFTLA 246

Query: 242  QKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               RP+   D  Y K+  EM  +F D+PEA++NTVEIA+RC+  +++H   LP F   + 
Sbjct: 247  DPRRPKKYSDQQYFKSSEEMCELFEDIPEAIQNTVEIAKRCNATVRLHEYFLPNFPTGDL 306

Query: 301  DDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                   E+ L + +  GLE RL         +     +Y +RLD EL VI +M F GYF
Sbjct: 307  -----TIEDFLVDVSEKGLEERLEFLFPDPEVRAEKRPEYDERLDIELKVINQMGFPGYF 361

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV +FIQW K N+IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 362  LIVMEFIQWGKDNDIPIGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPD 421

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ K
Sbjct: 422  FDVDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK 481

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +P   ++ +A   +   +E+   D  V  L+++ + LEG+ R+A  HA G+VI   
Sbjct: 482  MIPAEPGMTLA-KAFEVEPGLQESYDGDEEVKDLIDMCRILEGVTRNAGKHAGGVVIAPT 540

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +     K  
Sbjct: 541  KITDFSPIYCDTEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMVNSVKEKNG 600

Query: 596  ---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               V +  I   D + + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RP
Sbjct: 601  EEPVRIESISLTDPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRP 660

Query: 653  GPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V N   RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+L+GY
Sbjct: 661  GPLQSGMVDNFIERKHGREEVSYPDAEYQHESLQELLSPTYGIILYQEQVMQIAQVLAGY 720

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH
Sbjct: 721  TLGGADMLRRAMGKKKPEEMAKQRGTFEEGAIANGVDGPLSMKIFDLVEKFAGYGFNKSH 780

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA++SYQT W+KTHYP +F+AA M+ +MDN +KI     +  +  + ++PP VN   
Sbjct: 781  SAAYALVSYQTLWLKTHYPAQFMAAVMSADMDNTDKIVTLVDECERMGMPLIPPDVNKGL 840

Query: 826  VDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V ++  I Y + A+KGVG      I++A  + PF  L DFC+R+D KKLNRRV+E 
Sbjct: 841  FRFTVDEDLNIVYGIGAVKGVGEGPVDSILKARENGPFKDLFDFCARIDLKKLNRRVIEK 900

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKF 943
            L+ AGALD  G  R  ++ +L    + A    K       ++F        D K    + 
Sbjct: 901  LICAGALDNLGPHRAAMIATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQRFVEC 960

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
            +     V  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+
Sbjct: 961  TPWPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTMKAAGLVVA 1020

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+++G VT  + +   E   F
Sbjct: 1021 TRVMMTKRGAKMGLVTLDDKSARLEVMLF 1049


>gi|329296121|ref|ZP_08253457.1| DNA polymerase III subunit alpha [Plautia stali symbiont]
          Length = 1125

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1023 (41%), Positives = 610/1023 (59%), Gaps = 60/1023 (5%)

Query: 42   PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDID---MQDNLKMTNQGKTPFPTVPS 98
            PAIAITD  NL   + F   A +AGI+PI+G    +    M D L               
Sbjct: 2    PAIAITDYTNLCGLVRFYGSAHSAGIKPIVGADFQVASDLMGDELT-------------Q 48

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            + +L +   GYQ L  L+SR Y    G     I   WL E+G   LI+L+GG  G + R+
Sbjct: 49   LTVLAANNTGYQNLTLLISRAYQRGYGIAGPIIDRDWLLELGEG-LILLSGGRRGDVGRS 107

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNS 217
                ++ +  + L  +++ F +R Y+ L R  R  +       V+LA    +P+VATN  
Sbjct: 108  LLRGNNALVAQCLSFYQQHFPNRYYLELTRTGRPDEEAYLHAAVELAIAESVPVVATNEV 167

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVE 276
             FL+EED++AH++ +A+     +    RPR  +P  Y+++  EM  +FSD+PEALEN+VE
Sbjct: 168  CFLNEEDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYMRSEGEMCELFSDIPEALENSVE 227

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYH 333
            IA+RC+  +++    LP+F   +        E+ L  K+  GLE RLA        +   
Sbjct: 228  IAKRCNVTVRLGEYFLPQFPTGDM-----STEDFLVMKSREGLEERLAFLFPDEQVRAKR 282

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              +Y +RLD ELNVI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS+ AYAL IT
Sbjct: 283  RPEYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKIT 342

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            D+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V   YG + V+QIITFG++ 
Sbjct: 343  DLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAEMYGRDAVSQIITFGTMA 402

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
            AKA +RDVGR L  PY  V+R+ KLIP DP   +  +A   + +  E   AD  V  L++
Sbjct: 403  AKAVIRDVGRVLGHPYGFVERISKLIPPDPGMTLE-KAFQAEPQLPEIYEADEEVKALID 461

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
            +++KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDF
Sbjct: 462  MARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDENGQFPVTQFDKNDVEYAGLVKFDF 521

Query: 574  LGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            LGL+TLT++  +L  +  R  K     ++++ IP DD +++ +L    T  +FQLES GM
Sbjct: 522  LGLRTLTIIDWALKMINPRREKQGLPPINIAAIPLDDKKSFDMLQRSETTAVFQLESRGM 581

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPM 681
            +  ++ ++PDC ED+IALV+L+RPGP+ + +V N  +RK+G+E I        H  + P+
Sbjct: 582  KDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDIQWQHESLKPV 641

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EEM KQ+  F  GA K GI
Sbjct: 642  LEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFQDGAEKMGI 701

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            +  +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT ++DN EK
Sbjct: 702  NGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADIDNTEK 761

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEA-SAD 859
            +     +  +  ++++PP +N+    F V D+  I Y + AIKGVG      I+EA +  
Sbjct: 762  VVGLVDECWRMGLKVLPPDINSGLYPFHVNDDGEIVYGIGAIKGVGEGPIEAILEARNQG 821

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
              F  L D C+R D+KK+NRRV+E L+ +GA D  G  R  L+ +L N  K A    K  
Sbjct: 822  GYFKELFDLCARTDTKKINRRVMEKLIMSGAFDRLGPHRAALISALGNALKAADQHAKAE 881

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFENEQRVLGFYFSGHPLDV 970
                 ++F    G  ++    E   VE S          V+ + E+  LG Y +GHP++ 
Sbjct: 882  ATGQADMF----GVLAE----EPEQVEQSYAAITPWPEQVQLDGERETLGLYLTGHPINQ 933

Query: 971  Y-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            Y K I R +G    ++   T RG     A +V++ +   T++G+RIG  T  + +   E 
Sbjct: 934  YLKEIERYVGGMRLKDMHPTERGKVTVAAGLVIAARVMVTKRGNRIGICTLDDRSGRLEV 993

Query: 1030 NFF 1032
              F
Sbjct: 994  MLF 996


>gi|120611898|ref|YP_971576.1| DNA polymerase III subunit alpha [Acidovorax citrulli AAC00-1]
 gi|120590362|gb|ABM33802.1| DNA polymerase III, alpha subunit [Acidovorax citrulli AAC00-1]
          Length = 1190

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/1004 (40%), Positives = 591/1004 (58%), Gaps = 50/1004 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P FVHL++H+ +S+++G   ++ +    + D QPA+AITD +NLF A++F ++A   G++
Sbjct: 9   PMFVHLRLHTEFSVVDGTARIDEVAKAASKDGQPALAITDLHNLFGAIKFYKEARGKGVK 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           P++G ++ I+ +        G  P      I+LL    +GY  L E+++R +  +  K  
Sbjct: 69  PVLGAEVSIEPE------TAGGPP----GRILLLAQGRQGYLNLCEMLARAWTRNVVKNV 118

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                 WLQE+G + LI L+G  +GP+ +AF       A +  L    +F  R Y+ LQR
Sbjct: 119 PLCTWEWLQELGGD-LIALSGAQAGPVGQAFTRGDEAGAARVALRLAGIFPHRFYLELQR 177

Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
             R  D  +    VQLA    LP+VAT  + FL+ +DYEAH+  + +A   +++   R  
Sbjct: 178 AGRPEDESQVVAAVQLAARLNLPVVATQPTQFLTADDYEAHEARVCIAEGEILANPRRVR 237

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
           R T + Y K+ ++M ++F+D+P A+ NT+EIA+RCS  L +  P LP F       I   
Sbjct: 238 RFTREQYFKSSAQMEALFADVPTAIANTLEIAKRCSLTLVLGKPRLPDFPTPNGMPI--- 294

Query: 307 EENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E   R  +  GLE RL         +      Y +RL+FEL  I +M F GYFLIV DF
Sbjct: 295 -EEYFRYASFEGLEERLKHLFPNEAEREKQRPRYVERLEFELGTILKMGFPGYFLIVGDF 353

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           IQWAK+N  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFC
Sbjct: 354 IQWAKQNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFC 413

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
           Q  RD VI YV++KYG   V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P
Sbjct: 414 QSNRDRVIDYVKDKYGKNAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKP 473

Query: 484 ------AHPVSLQAIADDSRFR--------EARLADPSVDRLLEISQKLEGLYRHASTHA 529
                 A+P  ++   D + +         E    +  V  ++E++QKLEG+ R+   HA
Sbjct: 474 GMSYTLAYPPEVKKEGDKNNYALELEPMLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHA 533

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F+
Sbjct: 534 GGVLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFI 593

Query: 590 AQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            +R    +      IP DD  TY L +   T  +FQ ES GM+  L+  +P  +ED+IAL
Sbjct: 594 MKRHKGQENFAFENIPLDDAPTYRLFSEGKTEAVFQFESRGMQGMLKEARPSRLEDLIAL 653

Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            +LYRPGP+D I  + NRK+GKE +   HPL++P+L ET G+++YQEQVMQ AQ+L GYS
Sbjct: 654 NALYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYS 713

Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
           L  AD+LRRAMGKK  EEM + +E F  GA++ GI +  A  +F+L+ KFA YGFNKSHA
Sbjct: 714 LGGADMLRRAMGKKKAEEMAEHREIFRKGAAEKGIGQDKADEVFDLMEKFAGYGFNKSHA 773

Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
           AAY++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA +  +   PP VN    
Sbjct: 774 AAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLYEDAMKMGLTFEPPDVNRGMY 833

Query: 827 DFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK----------PFDSLEDFCSRVDSK 875
            F+ V D  I Y L A+KG G      I+ A   +          PF SL DFC+RVD  
Sbjct: 834 RFEPVTDKVIRYGLGAVKGTGQQAIEAIIAAREGRGVGPRGDTKGPFASLFDFCARVDRT 893

Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV--EKNRTNKHENIFAHEKGT 933
           +LN+R LE+L+ AGA D    +R  L+ S+D    +A  +    N+    + +     G+
Sbjct: 894 RLNKRTLEALIKAGAFDAIEMNRASLVASIDRAFDFANSLIANANQGGLFDMMGDDAHGS 953

Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
            +    L +        R   E+  +GFY SGH  D  +  +R+
Sbjct: 954 STQDPALVEMLPWGVKERLTQEKTAVGFYLSGHLFDEVEKEVRR 997


>gi|226945926|ref|YP_002800999.1| DNA polymerase III subunit alpha [Azotobacter vinelandii DJ]
 gi|226720853|gb|ACO80024.1| DNA polymerase III alpha subunit [Azotobacter vinelandii DJ]
          Length = 1176

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1070 (40%), Positives = 627/1070 (58%), Gaps = 68/1070 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL+VH+ +SL++G + +  ++  +A    PA+A+TD +N+ S ++F + A A G+
Sbjct: 2    SVSFVHLRVHTEFSLVDGLVRVKPLIKAVAGAGMPAVAVTDQSNMCSLVKFYKAAMAGGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ-GK 126
            +PI  C  DI +            P   +  + LL   A+GY+ L ELVSR +   Q G 
Sbjct: 62   KPI--CGADIWLAS--------AEPDAPLSRLTLLAMDAKGYRNLTELVSRGWTEGQHGD 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V I   W++E   EG+I L+G   G I +A        A   L  +  +F +R Y+ +
Sbjct: 112  GLVIIQRDWVKE-AAEGVIALSGAKEGEIGQALLNGHVDQAAALLEEWLAVFPERFYLEV 170

Query: 187  QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR  R  D       V+LA  +  PLVATN+  FL +ED+EAH+  + +     +    R
Sbjct: 171  QRTGRVGDEEYLHAAVELADRYGAPLVATNDVRFLKQEDFEAHETRVCIGEGRTLGDPRR 230

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR   D  YLK  +EM  +FSDLPEALEN+VEIARRC+  +++    LP F       I 
Sbjct: 231  PRNYSDQQYLKTPAEMWELFSDLPEALENSVEIARRCNIEVRLGKYFLPNFPVPAGMTI- 289

Query: 305  KEEENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               ++ LR  A  GLE RLA     +         + Y +RL+FELN I +M F GYFLI
Sbjct: 290  ---DDYLRQVAYEGLEERLAVLWPQETTPDYADKREVYVERLEFELNTIIQMGFPGYFLI 346

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 347  VMDFIKWAKNNGVPVGPGRGSGAGSLVAYALKITDLDPLAYDLLFERFLNPERISMPDFD 406

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI YV + YG   V+QIITFGS+ AKA +RDV R     Y   DRL K+I
Sbjct: 407  VDFCMDGRDRVIDYVADTYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMI 466

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +    +  +A   +   RE    D     + +++ KLEG+ R    HA G+VI    L
Sbjct: 467  PFEVGMTLE-KAYEQEEMLREFLKNDEEAQEIWDMALKLEGITRGTGKHAGGVVIAPTKL 525

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK 595
            +   P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ +     +RG  
Sbjct: 526  TDFAPIACDADGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETIHREQRRRGET 585

Query: 596  --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              VD+  I  DD  TY LL    T  +FQLES GM++ ++ ++PD IED+IALV+L+RPG
Sbjct: 586  ELVDIDRIALDDKATYALLQRAETTAVFQLESRGMKELIKKLKPDNIEDMIALVALFRPG 645

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V  + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ+++GY+
Sbjct: 646  PLQSGMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYT 705

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F+ G +KNGI   +A NIF+L+ KFA YGFNKSH+
Sbjct: 706  LGGADMLRRAMGKKKPEEMAKQRGGFVEGCAKNGIDAELAGNIFDLVEKFAGYGFNKSHS 765

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAY ++SYQTAW+KT YP  F+AA ++ +M N +K+    ++ R   ++I+ P VN    
Sbjct: 766  AAYGLVSYQTAWLKTRYPAPFMAAVLSADMHNTDKVVTLIEECRSMKLRIVAPDVNNSEF 825

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884
             F V D  RI Y L AIKGVG      I+E  +A  PF  L DFC+RVD K++N+R LE+
Sbjct: 826  MFTVDDEGRIVYGLGAIKGVGEGPVEAIVECRAAGGPFTDLFDFCARVDLKRINKRTLEA 885

Query: 885  LVFAGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+  GALD  G                +R  LL +++   + A+   ++  + H ++F  
Sbjct: 886  LIRGGALDRLGPYFADEPKAYQANIDRNRAVLLAAVEEAVQAAEQTARSADSGHLDLFGG 945

Query: 930  -----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                 E   +++     + S+++   R + E+  LG Y +GHP+D Y+  +R+       
Sbjct: 946  LFAEPEADVYANHRNARELSLKD---RLKGEKDTLGLYLTGHPIDEYEGEVRRFA----R 998

Query: 985  ESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +  +R       +A ++V+ +  K +KG ++G++T  + +   EA+ F
Sbjct: 999  QRIVELRPARELQTIAGLIVNLRVMKNKKGDKMGFITLDDRSARIEASLF 1048


>gi|152979519|ref|YP_001345148.1| DNA polymerase III subunit alpha [Actinobacillus succinogenes 130Z]
 gi|150841242|gb|ABR75213.1| DNA polymerase III, alpha subunit [Actinobacillus succinogenes 130Z]
          Length = 1158

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1053 (40%), Positives = 620/1053 (58%), Gaps = 56/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+ HS +S+++G   +  ++     +   A+ +TD  N    ++F  +A +AGI+
Sbjct: 4    PRFVHLRTHSDFSMIDGIAKVKPLVKACVREDMVAMGLTDFTNFCGLVKFYGEALSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G   D+ +   L     G   F     + LL    EGY+ +  L+S+ Y   +G   
Sbjct: 64   PIVGA--DVLVSSAL----CGDERF----ELTLLAKNNEGYKNITLLLSKAY--QRGYDD 111

Query: 129  V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            +  I   WL E   EGLI+L+GG  G I +    +    AE  L  ++K F +  Y++L 
Sbjct: 112  LPYIDRDWLIE-HKEGLIILSGGRRGDIGQKLLKDKFADAESALGFYQKFFPNHFYISLA 170

Query: 188  RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R   YD  R  +  + LA  H +PLVATN+ +FL  ED+EAH++ +A+     +    RP
Sbjct: 171  RVGHYDEERYIRAAMDLAKKHRIPLVATNDVVFLKTEDFEAHEIRVAIHDGYTLDDPKRP 230

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            ++ TP  Y ++  EM  +F+D+P ALENT+ IA+RC+  +++    LP+F   E      
Sbjct: 231  QLYTPQQYFRSEQEMCELFADIPTALENTLLIAQRCNVTIRLGQYFLPQFPTGEL----- 285

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+ L  +A  GLE RL         +  + + Y +RL+ EL VI +M F GYFLIV +
Sbjct: 286  STEDYLVKRAKDGLEERLEFLFPDPKVRSENRRKYDERLETELGVINQMGFPGYFLIVME 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 346  FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI +V   YG   V+QIITFG++ AKA +RDVGR L   Y  VDR+ KL+P D
Sbjct: 406  CMEGRDRVIDHVAETYGRSAVSQIITFGTMAAKAVIRDVGRVLGHAYGFVDRISKLVPPD 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   ++ +A   + + +EA  +D  V  L+++++KLEG+ R+A  HA G+VI    ++  
Sbjct: 466  PGMTLA-KAFDMEPKLQEAYDSDEEVKELIDMARKLEGVTRNAGKHAGGVVISPTKITDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
             P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ +  R V+     V 
Sbjct: 525  SPLYCDSEGRHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINARMVREGKPEVR 584

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+ +
Sbjct: 585  IESIPLDDPESFKLLLNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQS 644

Query: 658  IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N  +RK+G+E++        H  + P+L+ T GVI+YQEQVMQIAQ+L+GY+L  A
Sbjct: 645  GMVDNFIDRKHGREEVSYPDAEYQHISLKPILESTYGVILYQEQVMQIAQVLAGYTLGGA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 705  DLLRRAMGKKKPEEMAKQRSVFEEGAVKNGIDGKLAMKIFDLVEKFAGYGFNKSHSAAYA 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+K H+P EF+AA MT EMDN +KI     +  +  +++ PP +NT    F V
Sbjct: 765  LVSYQTLWLKAHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINTGKHHFSV 824

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D+  I Y + AIKGVG      +++A  +   F  L D C+RVD K++NRR  ESL+ +
Sbjct: 825  NDHGEIVYGIGAIKGVGEGPIEALVKARNEGGIFKDLFDLCARVDLKQINRRTFESLIKS 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHE----KGTFSDKIT 939
            GA D  G  R  L ++L++  + +    K+      ++F      HE    K   + + T
Sbjct: 885  GAFDKLGPHRAALAKNLEDALQSSNQFAKDEAIGQADMFGVLTAGHEEVERKYANTPRWT 944

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
             ++          + E+  LG Y S HP+  Y   L        ++ V   RG       
Sbjct: 945  EKQI--------LDGERETLGLYLSSHPISRYLKELSHYTPNRLKDLVPNQRGQMTTACG 996

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++VS +   T+KGSR+G  +  + +   +   F
Sbjct: 997  LIVSSRFAVTKKGSRLGIASLDDRSGRLDITLF 1029


>gi|89092103|ref|ZP_01165058.1| DNA polymerase III subunit alpha [Oceanospirillum sp. MED92]
 gi|89083838|gb|EAR63055.1| DNA polymerase III subunit alpha [Oceanospirillum sp. MED92]
          Length = 1163

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1055 (40%), Positives = 618/1055 (58%), Gaps = 55/1055 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+FVHL+VH+ +SL++G + +  ++     +  PA+ +TD  N F  ++F + A   GI+
Sbjct: 4    PTFVHLRVHTEFSLVDGLVRVKELVAAAKKEGMPAVGMTDQTNFFGLVKFFKAATGNGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG--K 126
            PI G  L ++  D       G  P+     I LLV  A+GY  L+EL+S+ Y   Q    
Sbjct: 64   PICGSDLWVENTDE-----PGGEPY----RITLLVRNAQGYLNLMELISQAYAEGQNIIP 114

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +   W+ E   EGLI L+G   G + RA      Q  E  L  +  +F D  Y+ +
Sbjct: 115  DMALVKPEWV-EAKAEGLIALSGAKKGEVGRAILAEKGQAPEV-LQRWMGVFKDSFYLEV 172

Query: 187  QRHRGYDRYRESQVV----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            QR     R  + Q+V    +LA     PLVATN  +F+  +D+EAH+V + +  S  +  
Sbjct: 173  QRT---GRVGDEQIVHGSVELAKQFGCPLVATNEVMFVKADDFEAHEVRVCINQSRTLED 229

Query: 243  KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE-- 299
              RP+  +   Y +++ EM ++FSD+P AL+N+VEIA+RC+  +++    LP++   E  
Sbjct: 230  PTRPKEYSEQQYFRSQREMEALFSDIPSALQNSVEIAKRCNIDIEIGTYYLPKYPIPEGM 289

Query: 300  -CDDIQKEEENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
              DD         R  +  GLE RL     +         Q+Y  RL+FEL++I +M F 
Sbjct: 290  LMDDF-------FRKVSFDGLEERLEILLDRDDPEYDAKRQEYIDRLEFELDIIIQMGFP 342

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV DFI+W K+N +PVGPGRGSGAGS+ AYA  ITD+DPL + LLFERFLNP+R+S
Sbjct: 343  GYFLIVMDFIKWGKENGVPVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVS 402

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFDIDFC D RD+VI YV   YG + V+QI+TFG++ AKA +RDV R    P+   DR
Sbjct: 403  MPDFDIDFCMDNRDKVIDYVARTYGRDAVSQIVTFGTMAAKAVVRDVARVQGKPFGLADR 462

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            L KLIP +P   +  +A+  +    E   +      +++++ KLEG+ R    HA G+VI
Sbjct: 463  LSKLIPFEPGITLK-KALDQEPMLCEFIESSEEAQEIMDMAYKLEGVTRGVGKHAGGVVI 521

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----- 589
                L+     Y D   +  VTQF+   +E+AGL+KFDFLGL+TLT++  +L  +     
Sbjct: 522  APTKLTDFAATYCDEEGNGLVTQFDKGDVEEAGLVKFDFLGLRTLTIIDWALQTVNRIRD 581

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
             Q    +D++LI  +D +T+ LL    T  +FQLESSGM+  +  + P   EDI+ALV+L
Sbjct: 582  KQGEEPLDIALIDLEDKKTFDLLQAAETTAVFQLESSGMKDLVRRLLPSRFEDIVALVAL 641

Query: 650  YRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLL 702
            +RPGP+ + +V  + NRK+G+ ++   HP      + P+L+ T G+I+YQEQVMQIAQ++
Sbjct: 642  FRPGPLQSGMVDDFINRKHGRAEMAWPHPDYQLDSLQPVLEPTYGIILYQEQVMQIAQVM 701

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +GY+L  AD+LRRAMGKK  EEM KQ+  F+ G+ +NGI + +A NIF+L+ KFA YGFN
Sbjct: 702  AGYTLGGADMLRRAMGKKKPEEMAKQRVSFLDGSEQNGIDRDLAGNIFDLVEKFAGYGFN 761

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            KSH+AAYA++SYQTAW+K HYP  F+AA M+ +M N +K+  F ++ R   I    P+VN
Sbjct: 762  KSHSAAYALVSYQTAWLKAHYPAPFMAAVMSSDMQNTDKVVIFIEECRNMGIPPALPNVN 821

Query: 823  TPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRR 880
            T    F V D   I Y L AIKGVG      I+EA A+   F+ L DFC RV +KKLN+R
Sbjct: 822  TGEYMFTVNDEGVIVYGLGAIKGVGEGPIEAIVEARAEGGEFNDLFDFCERVGAKKLNKR 881

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
            VLE+LV +GA+DC G  R  L +++ +  K A    KN      ++F   +   SD+ T 
Sbjct: 882  VLEALVRSGAVDCLGAERAVLWEAIPDALKAADQAAKNSDAGMFDLFGEVEAE-SDRCTY 940

Query: 941  EKFSVENSSV---RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
            E +    S     R   E+  LG Y +GHP+D Y+  L+    +   E +   RG   ++
Sbjct: 941  EDYRNVRSWTDKERLAGEKDTLGLYLTGHPIDEYEAELKHFISRRIVE-LQPARGQTQKM 999

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A +VV  + KKT+KG  + +VT  + +   +   F
Sbjct: 1000 AGLVVDLRLKKTKKGDNLCFVTLDDRSARIDVTLF 1034


>gi|310823737|ref|YP_003956095.1| DNA polymerase III subunit alpha [Stigmatella aurantiaca DW4/3-1]
 gi|309396809|gb|ADO74268.1| DNA polymerase III, alpha subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 1185

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1058 (40%), Positives = 625/1058 (59%), Gaps = 57/1058 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL +H+ YSLL+GA+ + +++  +      ++A+TD  N+F+ ++F +KA  AGI+P
Sbjct: 2    SFTHLHLHTLYSLLDGAIRMKDLIKTVKDKGMSSVAVTDHGNMFATIDFYKKAKDAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +      +  ++          ++L+   AEGY  L  L S  Y+ D      
Sbjct: 62   IIGMEAYVAGTKGREDRSE-----KVAHHLILVAQNAEGYANLRYLSSTAYM-DGFYYHP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI    L +  ++GL  LT    G +  A F      A +    +K +F     ++ +Q 
Sbjct: 116  RIDKKVLAQ-HSKGLFALTACLGGEVTSACFRGDMDHARRAATEYKDIFEPGHFFLEVQS 174

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++ + ++ + QL+   ++PL AT ++ ++  ED  AH++LM +A    +S   R R
Sbjct: 175  NGIPEQDKANENLKQLSRDLDIPLCATADAHYIKREDARAHELLMCIASGKTLSDGKRLR 234

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + D  Y+ +  EM+  F D PEA+ NT  IA +C+  L++  P+LP F  K  D     
Sbjct: 235  HSTDKLYVTSPQEMLEFFRDTPEAVHNTQVIADQCNLELKLGKPMLPTF--KVPD--SHT 290

Query: 307  EENELRNKAVAGLEVRLAQ--GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             ++ +   A  GL  R  +   A AK +  + YR RL+ ELNVI +M FSGYFLIV DFI
Sbjct: 291  PDSFMAELAFEGLHERFKELHHAGAK-FDPEMYRARLNLELNVIQKMGFSGYFLIVQDFI 349

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAKK NIPVGPGRGSGAGS+ AYAL ITD+DPL ++LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 350  NWAKKANIPVGPGRGSGAGSLVAYALRITDLDPLPYNLLFERFLNPERVSMPDFDIDFCQ 409

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRRDEVI+YV  KYG   V QIITFGSL+AK+ LRDV R   +P+S+ DR+ KL+P    
Sbjct: 410  DRRDEVIKYVSQKYGEMNVGQIITFGSLKAKSVLRDVCRVFGLPFSEGDRIAKLVPE--V 467

Query: 485  HPVSL-QAIADDSRFREARLADPS-----------VDRLLEISQKLEGLYRHASTHAAGI 532
              ++L +AI  ++R +E  +  PS              +LEI+  LEGL+R    HAAG+
Sbjct: 468  LGITLKEAIEQEARLKEM-MEKPSNVGEVEGKPVTTKDVLEIALALEGLHRQPGMHAAGV 526

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI D+PL + VP+Y+       +TQF    +E AGL+KFDFLGLKTLT++Q +LD + + 
Sbjct: 527  VIADKPLWEFVPVYQPPGEKTLITQFAKDEVEAAGLVKFDFLGLKTLTVIQNALDLINRN 586

Query: 593  ---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
               G K++   IP  D   + L+    T G+FQ+ESSG  + +  ++P C ED+IA  +L
Sbjct: 587  PPNGKKLERQDIPLHDELMWKLMADGDTAGVFQMESSGFTEMVMKLKPSCFEDVIAAGAL 646

Query: 650  YRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            YRPGP+D+  + V+ NRK+G+E +   HP ++P+LK+T GVI+YQEQVMQI+Q+L GY+L
Sbjct: 647  YRPGPLDSGMVDVFINRKHGREPVTYPHPALEPVLKDTYGVIVYQEQVMQISQVLGGYTL 706

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  E M  ++  F+ G  KN +   +A  IF+L+ KFA+YGFNKSH+A
Sbjct: 707  GRADLLRRAMGKKKAEVMQAERAGFLEGCKKNNVDLKVAGEIFDLMEKFAEYGFNKSHSA 766

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AY +I+  TAW+K H+PVEF+AA +T E DN +K+ +   +AR+   Q++PP VN   + 
Sbjct: 767  AYGLITIHTAWLKAHFPVEFMAALLTSEKDNTDKVVRHIGEAREAGHQVLPPDVNQSDMA 826

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            F   D +I + L AI GVG      I+EA  D  F  L DFC RVDS+++N++VLE+LV 
Sbjct: 827  FGAVDGKIRFGLGAINGVGEGAIESIVEARKDGFFKGLFDFCERVDSRRVNKKVLEALVK 886

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--------HEKGTFSDKIT 939
            AGA D     R QL ++++         +K++     ++F            G   D   
Sbjct: 887  AGAFDFEKRPRRQLFETIERAMNRGSASQKDKAAGQSSLFGMLAGPAAGGGGGMKDDYAQ 946

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI----RGNNI 995
            +E++  E   + FE +   +GFY SGHPL  Y   L++     Y   V ++    R   I
Sbjct: 947  VEEWP-EKERLAFEKD--AIGFYVSGHPLHQYDKELKR-----YARPVTSVQRARRDEKI 998

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +  +V + +++ T+ G R+ WVT  + +   E   FP
Sbjct: 999  TVGGIVAALRERPTKTGKRMAWVTLEDLSGSIELVCFP 1036


>gi|160872170|ref|ZP_02062302.1| DNA polymerase III subunit alpha [Rickettsiella grylli]
 gi|159120969|gb|EDP46307.1| DNA polymerase III subunit alpha [Rickettsiella grylli]
          Length = 1166

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/1058 (39%), Positives = 621/1058 (58%), Gaps = 59/1058 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF+HL +HS YSL++G + +  ++DK      PA+A+TD +NLF+ ++F Q A   GI+P
Sbjct: 3    SFIHLHLHSEYSLVDGLIRIEKLVDKACELSMPALAVTDLSNLFATIKFYQAAIKKGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +      K   +G+        ++LL     GY+ LI+L+S+ YL +  +   
Sbjct: 63   IIGAECRV------KDDQEGQEY-----QLILLCQNLRGYRNLIQLISKSYLENAKEGQP 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             +   W   I +EGLI L+G   G I       +  +A   L  + +LF +R Y+ +QR 
Sbjct: 112  LLQKDWFS-IYSEGLIALSGAREGDIVSCLMKKNKSLAVDYLQFWLRLFPNRFYLQVQRL 170

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             R  +       V LA +  +P+VATN   FL  ED+EAH+  + + +  +++   R + 
Sbjct: 171  GRPLEEEYIELSVGLAASFNVPVVATNEVCFLVPEDFEAHEAKVCINNGYLLNDPKRLKF 230

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   YL++  EMV +F+D+P AL N+VEIA+RC+  +++ A  LP F   E        
Sbjct: 231  YTNQQYLRSMEEMVVLFADIPSALSNSVEIAKRCNLEIELGASFLPNFPIPE----GMSA 286

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD---------------------YRQRLDFELN 346
            E  L  +A +GL   L   +  +    ++                     Y  RL  EL 
Sbjct: 287  EKLLTQEAQSGLTRYLGSQSFLRVSQTKNKEFQPIEKLTSPQTFKAFEKIYFDRLHSELQ 346

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI  M F+ YFLIVADFI+WAKKN IPVGPGRGSGAGS+ AY L IT +DPLR+ LLFER
Sbjct: 347  VINSMGFASYFLIVADFIRWAKKNKIPVGPGRGSGAGSLVAYVLQITGLDPLRYDLLFER 406

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPDFDIDFC + RD VI YV  +YG   V+QIIT+GS+ A+A +RDVGR L 
Sbjct: 407  FLNPERISMPDFDIDFCMEGRDRVIDYVTTRYGRNAVSQIITYGSMAARAVVRDVGRVLG 466

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
             PY  VD++ KLIP +    +  +A+  +   +     +  +  L+++++KLEGL R+  
Sbjct: 467  YPYGMVDKIAKLIPFELGITLE-KALTQEDELKTRYENEDEIKILIDLAKKLEGLVRNVG 525

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HA G+VI    L    P+Y +      +TQF+   IEK GL+KFDFLGL+TLT+    +
Sbjct: 526  KHAGGVVIAPSQLVDFTPLYCERGGTHCITQFDKDDIEKVGLVKFDFLGLRTLTI----I 581

Query: 587  DFLAQRGVK--------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            D++ Q   K        +D+  IP DD +T+ LL    T  IFQLES GMR  ++ + PD
Sbjct: 582  DWVVQAINKKKKPEEELLDIGTIPLDDVKTFDLLKACKTTAIFQLESRGMRDLIKRLCPD 641

Query: 639  CIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
              ++I+ALV+L+RPGP+ + +V  + NRK+G+  +   HPL++P+L  T G+I+YQEQVM
Sbjct: 642  SFDEIVALVALFRPGPLQSGMVDDFINRKHGRAHVQYAHPLLEPILSSTYGIILYQEQVM 701

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            QIAQ+L+GY+L  AD+LRRAMGKK  EEM +Q+  F+ GA + GI +++A  IF+L+ KF
Sbjct: 702  QIAQVLAGYTLGAADLLRRAMGKKKSEEMAQQRTIFMKGAEQEGIERSLANQIFDLMEKF 761

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            ADYGFNKSH+ AYA++SYQTAW+KTHY  EF+AA ++ +MD+ +K+  F  + R  N+ I
Sbjct: 762  ADYGFNKSHSVAYALVSYQTAWLKTHYAAEFMAAVLSSDMDHTDKVVIFLDECRAMNLPI 821

Query: 817  MPPSVNTPCVDFKVGDNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
            +PP +N     F V D+   I Y L AIKG+G      ++E      F  L D C RVD 
Sbjct: 822  LPPDINCSEYKFTVDDDTGAIRYGLGAIKGLGLGAIEMLIEQRQQDAFRDLFDLCQRVDF 881

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            +KLNRR +++L+ +G+LD FG +R  LL++++   + A      +++  ++ F  E  + 
Sbjct: 882  QKLNRRGIDALICSGSLDSFGLNRATLLENVEAALQAAIQKSLTKSSGQKDFFGLEMVSH 941

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
            S+++T +K   +    R + E+  LGFY SGHP++ Y   L         ES+    G+ 
Sbjct: 942  SNQMTHQKDWPKLE--RLQAEKDALGFYLSGHPIENYSNELPHFITSSLRESMIK-SGHT 998

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I +A  V++ +   T++G R+  +T  +     E   F
Sbjct: 999  ITIAGWVLNIRSLWTKRGDRMAILTLEDTNGRLEVTLF 1036


>gi|254251803|ref|ZP_04945121.1| DNA polymerase III [Burkholderia dolosa AUO158]
 gi|124894412|gb|EAY68292.1| DNA polymerase III [Burkholderia dolosa AUO158]
          Length = 1177

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1028 (40%), Positives = 616/1028 (59%), Gaps = 52/1028 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F Q+A   GI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC + I   D+    ++          ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGCDVWIANPDDRDKPSR----------LLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+   ++GL+ L+G   G I  A    + + A +    + K+F    Y+ LQR
Sbjct: 114  AELDASWLEGELSQGLLALSGAQQGDIGLALAAGNEEAARRHAERWAKVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q   LA +  LP+VAT+ + F++ +D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAASLAASLRLPVVATHPTQFMTADDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + Y + + EMV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFTTEQYFRTQDEMVALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RLAQ       +      Y +RL+FE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSREGLEKRLAQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 529  FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  SQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+S+  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCIANNLVVLPPDINLSHYRFEPVAEADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA 
Sbjct: 829  SRTIRYGLGAVKGSGQNAIEEILRARDEKPFTDLFDFCERIDRRIVNRRTIEALIRAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH------ENIFAHEKGTFSDKITLEKFSV 945
            D    +R QLL S+    + A   E N           E+  AH          L     
Sbjct: 889  DSLNANRAQLLASVPLAMEAADQAEANALQAGLFDMGAESPHAH---------ALVDEPA 939

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004
             +   R + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S 
Sbjct: 940  WDDKRRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKIGDLKEGRDKLVAGIIASL 995

Query: 1005 QQKKTRKG 1012
            + + T++G
Sbjct: 996  RTQMTQRG 1003


>gi|297617868|ref|YP_003703027.1| DNA polymerase III subunit alpha [Syntrophothermus lipocalidus DSM
            12680]
 gi|297145705|gb|ADI02462.1| DNA polymerase III, alpha subunit [Syntrophothermus lipocalidus DSM
            12680]
          Length = 1131

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1039 (40%), Positives = 630/1039 (60%), Gaps = 41/1039 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  HS YSLL+GA+ +++++ +      PA+AITD   L+  ++F ++A  AGI+P
Sbjct: 3    GFVHLHTHSEYSLLDGAVRVSSLVKRAKELGMPALAITDHGVLYGVIDFYKQARKAGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +     T +       +  + LL    +GY+ L+++VS+ +L +      
Sbjct: 63   IIGCEVYVAPRHRFDRTPKVDD---ALYHLTLLCENQDGYRNLVQMVSKAFL-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
            R+    L++ G  GLI L+G  +G +       + + A      F+++FG+   ++ +Q 
Sbjct: 119  RVDKELLEQHG-RGLIALSGCIAGEVPELLLAGNYEEARAVAGYFREVFGENNFFLEVQD 177

Query: 189  HRGYDRYRESQVVQLAYTH-----ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            H       E +VV  A  H     ++PLVATN+  +L+ +D   HDVL+ +    V++ +
Sbjct: 178  HG----LSEQRVVNEAMCHLSRELDVPLVATNDVHYLNRDDAFIHDVLLCIQTGKVLTDE 233

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R R   P+ Y K+  EM S+F+ +PEA+ NTV IA RCS      +  LP F   E   
Sbjct: 234  SRMRFPCPEFYFKSGEEMSSLFAHIPEAVTNTVTIAERCSVDFGFDSFCLPEFPLPE--- 290

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 E+ L + A   L  R A      G    D   RL  EL+VI RM F+GYFLIV D
Sbjct: 291  -GATAESYLEDLAWKKLRERFAH----PGTKVID---RLRLELDVINRMGFAGYFLIVQD 342

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             + WAK   I VGPGRGS AGS+ +Y L ITDI+PL + LLFERFLNP+R++MPD DIDF
Sbjct: 343  LVHWAKNRGIRVGPGRGSAAGSLVSYVLGITDINPLEYGLLFERFLNPERITMPDIDIDF 402

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C ++RD+VI YV  KYG +RVAQIITFG++ A+AA+RDVGR L+ PYS+VDR+ K++P +
Sbjct: 403  CFEKRDQVINYVIEKYGSDRVAQIITFGTMAARAAIRDVGRVLEYPYSEVDRIAKMVPAE 462

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                +SL +A+       EA   D  V RL++ ++ LEG  RHAS HAAG+VIG   LS+
Sbjct: 463  LG--ISLDRALEVSGDLAEAYKNDFRVRRLVDTARALEGFPRHASVHAAGVVIGRESLSR 520

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            ++P+ R     + VTQF  + +E+ GL+K D LGL+TLT++ + LD + + RG ++D+  
Sbjct: 521  VLPLQRTADGHV-VTQFTKETVEEIGLLKMDILGLRTLTVIDRCLDIIRKTRGYEIDIDH 579

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            I  DD +TY LL+   T+G+FQLES G+R+ L+ ++P   ED+IA+++LYRPGP+ + +V
Sbjct: 580  ISLDDPDTYRLLSEGDTVGVFQLESEGLRRLLQEVRPSSFEDLIAIIALYRPGPLGSGMV 639

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + NRK+G++ I  +HP ++P+L+ET GVI+YQEQVM+IA  L+ +S+ EADVLRRAMG
Sbjct: 640  EDFVNRKHGRQPIEYLHPKLEPILRETYGVILYQEQVMRIASELADFSMGEADVLRRAMG 699

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  +E+  Q+ +F+ GA +NGI +  A ++FEL+  FA YGFNKSH+AAYA++SYQTA+
Sbjct: 700  KKKPDELAAQRNKFVEGAYRNGIDRETASSLFELMEHFAGYGFNKSHSAAYALVSYQTAY 759

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K HYPVE++ A +T  +DN +++  + ++ R+  + I+PP +N    +F V   RI + 
Sbjct: 760  LKAHYPVEYMCAFLTSVIDNQDRVVYYLKECRRMGMDILPPDINESFENFTVAGGRIRFG 819

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L AIK VG    R I+EA  +  F SL +FC RVD ++LN+RV+E+L+ AGA D  G  R
Sbjct: 820  LGAIKNVGINAVRSIIEARKEGRFSSLLEFCLRVDLRQLNKRVMENLILAGAFDSLGLKR 879

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG--TFSDKITLEK--FSVENSSVRFEN 954
             + L  LD     A  V     +   ++F  +       D +   K  FSV+    + + 
Sbjct: 880  KEALSLLDECLALAVEVRAAMDSAQPSLFVDDAAATVVQDPVPRSKGEFSVQE---KLKK 936

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+ VLGFY S +PL+ Y+ ++  +      E      G  +R+ A V + ++ +++KG  
Sbjct: 937  EKEVLGFYVSQNPLEEYREVIPYLMSHEISELSKLDEGQVVRIVATVTAMKRSRSKKGEP 996

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
               +   +   + EA  FP
Sbjct: 997  WARLVLEDFTGKVEAVVFP 1015


>gi|294341044|emb|CAZ89439.1| DNA polymerase III subunit alpha [Thiomonas sp. 3As]
          Length = 1146

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/984 (41%), Positives = 589/984 (59%), Gaps = 33/984 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +VHL+ H+ YS+++GAL +++++   A D Q A+AITD NNLF+ + F + A  AG++PI
Sbjct: 3   YVHLRTHTEYSIVDGALRVDDMVPAAARDGQGALAITDFNNLFATVRFYKAALDAGVKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IGC +         +    + P      ++LLV    GY  L +L+SR +L +Q +    
Sbjct: 63  IGCDV---------LLGSARHP-GQFTRLLLLVQNRTGYLNLCDLLSRAWLDNQQRGRAV 112

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-- 188
           +   WL+    EGLI L+G   G I +A     +  A         +F  R Y+ LQR  
Sbjct: 113 VQWEWLEGGLAEGLIALSGAHEGAIGQALLQGDTATARDLARQHAAVFEGRFYIELQRGG 172

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
           H   + + ++  V LA    LP+VAT+   FL  +D++AH+  + +A    +    R R 
Sbjct: 173 HAACEPHVQA-AVPLAAELGLPVVATHPVQFLKADDFDAHEARVCIAEGETLGNPRRQRK 231

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            T   Y K+++EM ++F+D+P AL NTV IA+RC+ +L +  P LP F   +        
Sbjct: 232 FTAQQYFKSQAEMEALFADVPSALANTVAIAQRCNLVLDLGKPQLPLFPTPQG----LTP 287

Query: 308 ENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               R +A  GLE RLA    Q    +    + Y+QRL++EL +IA+M F GYFLIVADF
Sbjct: 288 AEFFRQQAQDGLEQRLAVLYPQADQCEAARPR-YQQRLEYELGIIAKMGFEGYFLIVADF 346

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           I WAK N  PVGPGRGSGAGS+ AY+L ITD+DPL ++LLFERFLNP+R+SMPDFDIDFC
Sbjct: 347 INWAKNNGCPVGPGRGSGAGSLVAYSLRITDLDPLEYALLFERFLNPERVSMPDFDIDFC 406

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
           Q+ RD VI YV+ KYG + V+QI TFG++ A+AA+RDVGR L + Y+  D + KLIP  P
Sbjct: 407 QENRDRVIDYVKEKYGVDAVSQIATFGTMAARAAVRDVGRVLDLSYTFCDGIAKLIPAKP 466

Query: 484 AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              +SL  A+  +    +    +  V +LL+++Q+LEGL R+   HA G++I    L+  
Sbjct: 467 GQHISLADALKQEPLLAQRYEEEEEVRQLLDLAQQLEGLPRNIGMHAGGVLIAPGKLTDF 526

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSL- 600
            P+Y    S   V+QF+   +E AGL+KFDFLGL TLT+L+     + +    + D  L 
Sbjct: 527 CPLYAQPGSTDAVSQFDKDDVEAAGLVKFDFLGLATLTILELGAQLIRRNHPDRADFKLE 586

Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP DD ++Y L+    T+ +FQLES GM+  L   +PD  EDIIALV+LYRPGP+D I 
Sbjct: 587 DIPLDDAKSYKLMAKGDTVAVFQLESRGMQGMLRDAKPDRFEDIIALVALYRPGPMDLIP 646

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            Y  RK GKE +V   P +  +L+ET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMGK
Sbjct: 647 TYCARKAGKEDVVYPDPRMASVLEETYGIMVYQEQVMQVAQVIGGYSLGGADLLRRAMGK 706

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K  EEM + +  F  GA+KNGI    A  IF+L+ KFA YGFNKSHAAAYA+++ QTAWM
Sbjct: 707 KKPEEMAQHRGIFAEGAAKNGIKPEKANEIFDLMEKFAGYGFNKSHAAAYALLAVQTAWM 766

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYS 838
           K HYP EFLAA+M++ +D+ +K+K   +DA+   I ++PP VN     F   D++ I Y+
Sbjct: 767 KAHYPAEFLAANMSIALDDTDKLKILVEDAQACGINVLPPDVNASQWRFDPVDSKTIRYA 826

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
           L AIKG G      ++ A  ++PF SL DF  RVD  +LN+RVLE+L  AGA D     R
Sbjct: 827 LGAIKGNGQAAVEAMIAARQERPFTSLFDFAERVDRTRLNKRVLEALAKAGAFDSLHPER 886

Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEKG----TFSDKITLEKFSVENSSVRFE 953
             ++ +++    YA   E  R      ++FA +        + +  L +    +   +  
Sbjct: 887 AAVMAAVETAMDYAAQREAARQQAGLFDLFAADAADGGHNPAHEPRLPEVEPWDLRTKLS 946

Query: 954 NEQRVLGFYFSGHPLDVYKPILRK 977
            E+  +G+Y SGH  D     +R+
Sbjct: 947 FEKTAIGYYLSGHLFDASAEEVRR 970


>gi|237808841|ref|YP_002893281.1| DNA polymerase III, alpha subunit [Tolumonas auensis DSM 9187]
 gi|237501102|gb|ACQ93695.1| DNA polymerase III, alpha subunit [Tolumonas auensis DSM 9187]
          Length = 1160

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1048 (40%), Positives = 631/1048 (60%), Gaps = 44/1048 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL +HS +S+L+G   +  ++ + A +   A+AITD  N    + F   A + GI+
Sbjct: 4    PRFVHLHIHSDFSMLDGLQKIKPLVARAAENNMVAMAITDQMNQSGLVRFYGDAHSKGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +  ++       G   F     ++ L    EG Q LI+L+S+ +L    +  
Sbjct: 64   PIIGVDFWVQSEE------LGDELF----HLIGLAMNNEGQQNLIQLISKGFLRGHIQGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E  T G+I+L+GG  G I +     +  + E+    +++ F +R Y+ L R
Sbjct: 114  AVIDKAWLAEHAT-GVILLSGGRDGDIGKFLLKGNQAMVERCTAFYQQHFPERFYLELIR 172

Query: 189  HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D      + V+LA   +LP+VATN+ +FL+++D++AH++ +A+     +    RP 
Sbjct: 173  TGRLDEETYLHMAVELAIQQDLPVVATNDVVFLNKDDFDAHEIRVAIHDGYTLDDARRPK 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R +   Y++ + EM  +F D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  RYSNQQYMRTQDEMCELFKDIPEALANSVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA         A+    Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVMKSKEGLEERLAFLFPDPAERAEKRIAYDERLDIELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL   LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLALDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MDRRDEVIDHVAQMYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  E    D  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAFDVEPKLVELYEQDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDL 598
            P+Y D +   PVTQF+   +E AGL+KFDFLGL+TLT+++ +LD +  R        VD+
Sbjct: 527  PLYCDDQGLQPVTQFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINPRLKTEGKPPVDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD  ++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDPTSFKILKNSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIQWQHDSLQPILEPTYGIILYQEQVMQIAQTLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F SGA  NG+   +A++IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSGFESGAVSNGVDGELAMHIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTH+P EF+AA MT +MDN +KI     + ++  ++++PP VNT    F V 
Sbjct: 767  VSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVTLVDECQRMGLKLIPPDVNTGQYRFTVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +   + Y + A+KGVG      I+ A  +  PF  L DFC+RVD K+LN+RV+E L++AG
Sbjct: 827  ERGEVVYGIGAVKGVGEGPVEAIIAARNEGGPFRDLFDFCNRVDIKRLNKRVMEKLIYAG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV---- 945
            ALD  G  R  L+ SL+   K A+   K+      ++F      F+D   L   +     
Sbjct: 887  ALDRLGPHRAALMASLEEAMKAAEQKAKDAALGQNDLFGD---LFADDGVLPTPTFADVP 943

Query: 946  ENSSVRF-ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
            E S  ++ + E+  LG Y +GHP++ Y   L+        +   T R      A +V++ 
Sbjct: 944  EWSDQKWLDGERETLGLYLTGHPINQYLAELKHYTSGRLCDLQPTERDKPAVAAGLVLNA 1003

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+++G +T  + +   +   F
Sbjct: 1004 RIMVTKRGTKMGILTLDDRSGRLDITLF 1031


>gi|119477117|ref|ZP_01617353.1| DNA polymerase III subunit alpha [marine gamma proteobacterium
            HTCC2143]
 gi|119449480|gb|EAW30718.1| DNA polymerase III subunit alpha [marine gamma proteobacterium
            HTCC2143]
          Length = 1207

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1086 (39%), Positives = 623/1086 (57%), Gaps = 85/1086 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++HS +SL++G + +  ++ K+A    PA+A+TD  N ++ ++F + A AAGI+P
Sbjct: 4    SFVHLRLHSEFSLVDGLVRIKPLVQKVADAGMPAVALTDHCNFYALIKFYKAAMAAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC  D  + D+   T        +V  + LL   ++GY+ L EL+SR Y   Q     
Sbjct: 64   ILGC--DFHVVDDTDET--------SVSHLTLLAQNSKGYRNLTELISRAYQDGQYLGRP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I  SWL E  TEG+I L GG  G +      N   +A  RL ++  LF    Y+ LQR 
Sbjct: 114  YIKQSWLTEY-TEGVIALGGGRQGDVGMLLVSNKLDLARTRLASYMSLFPGSFYMELQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R ++     + V LA   + P+VATN   FL   DYEAH+  + +     +    R R 
Sbjct: 173  GRQHEEDYLHKAVTLATELDCPVVATNEVCFLKTGDYEAHETRVCIHEGRALDDPRRSRN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-----IEKEC-- 300
             +   YL+   EM  +FSD+PEAL NTVEIA+RCS  +++    LP +      EK+   
Sbjct: 233  YSEQQYLRTPEEMAELFSDIPEALINTVEIAKRCSAEIELGEIYLPEYPIPDDYEKDAFF 292

Query: 301  -----DDIQKEEENEL-----------------------RNKAVAGLEVRLA----QGAI 328
                 D ++ + E  L                       R  ++ GL  RLA      AI
Sbjct: 293  QHEPYDGLKAQTEKSLAAKWVGKEATEDYAKELRTGIFFRKISIEGLNDRLAFLFGDDAI 352

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
            +   H ++YR RLDFEL++I  M F GYFLIV DFIQWAK + IPVGPGRGSGAGS+ AY
Sbjct: 353  S---HIKEYRDRLDFELDIILEMGFPGYFLIVMDFIQWAKDHEIPVGPGRGSGAGSLVAY 409

Query: 389  ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
            A  ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D RD+VI YV + YG + V+QIIT
Sbjct: 410  AQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDNRDKVISYVADNYGRDAVSQIIT 469

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
            FG++ AKA +RDV RA    Y   D+L K+IP +    +  +A   +   R+    D   
Sbjct: 470  FGTMAAKAVIRDVARAQGKSYGLADKLSKMIPFEVGMTLE-KAFEQEDILRDFLRDDEQA 528

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
              + +++ +LEG+ R+   HA G+VI    L+   P+Y D      VTQF+   +E+AGL
Sbjct: 529  QEIWDMAVQLEGITRNVGKHAGGVVIAPSKLTDFSPLYCDDSGGGLVTQFDKNDVEEAGL 588

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQ-----RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
            +KFDFLGL+TLT++  ++  + +         +++  IP DD  +Y LL    T  +FQL
Sbjct: 589  VKFDFLGLRTLTIIDWAVKMINRPKDDGSSPNLEIERIPLDDRASYQLLKRAETTAVFQL 648

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSI-----HP 676
            ES GM+  ++ +QPD +ED+IALV+L+RPGP+D+ +V  + NRK+G+ ++        H 
Sbjct: 649  ESRGMKDLIKRLQPDNLEDMIALVALFRPGPLDSGMVDDFVNRKHGRAEVAYPDAKYQHE 708

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
             + P+L+ T GVI+YQEQVMQIAQ L+GYSL  ADVLRRAMGKK  EEM +Q+  F  GA
Sbjct: 709  WLKPILEPTYGVIVYQEQVMQIAQELAGYSLGGADVLRRAMGKKNAEEMARQRTSFEDGA 768

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
               G+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQTAW+KTHYP EF+AA+M+ E+
Sbjct: 769  KAKGVDPELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKTHYPAEFMAATMSSEL 828

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIME 855
             N +KI  F ++ R   +    P VN     F V  +  I Y L AIKG+G     ++++
Sbjct: 829  QNTDKIVIFIEECRAMKLDYRLPDVNEGEYMFTVNKEGAIVYGLGAIKGLGEGPIENMIK 888

Query: 856  ASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
               +  PF SL DFC R D +K+N+R +++L+ +G+ D  G  R  LL ++    K A+ 
Sbjct: 889  TRDESGPFTSLFDFCERTDPRKVNKRAIDALIRSGSFDTLGVERAILLAAMPEAVKAAEQ 948

Query: 915  VEKNRTNKHENIF-----AHEKG-TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
               NR     ++F     A E G  +SD   +   S +    +   E+  LG Y +GHP+
Sbjct: 949  SAGNRDAGMMDLFGDVVSADEHGDVYSDYQNVRPLSPKE---KLGGEKDTLGLYVTGHPI 1005

Query: 969  DVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            D Y+  LR+         +  ++   NN  +A +VV  +  K ++G  + +VT  + +  
Sbjct: 1006 DEYEKELRQF----VRNRIVDLKADFNNQTMAGLVVGLRTMKNKRGDTMAFVTLDDRSAR 1061

Query: 1027 YEANFF 1032
             E +FF
Sbjct: 1062 IEISFF 1067


>gi|319794191|ref|YP_004155831.1| DNA polymerase iii, alpha subunit [Variovorax paradoxus EPS]
 gi|315596654|gb|ADU37720.1| DNA polymerase III, alpha subunit [Variovorax paradoxus EPS]
          Length = 1172

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/989 (42%), Positives = 594/989 (60%), Gaps = 42/989 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL++H+ +S+++G   ++ ++   AAD+QPA+AITD NNLF A++F ++    G++P+
Sbjct: 2   FVHLRLHTEFSVVDGTNRIDEVIKAAAADKQPALAITDLNNLFGAVKFYKQGRGKGVKPV 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK-QSV 129
           IG ++ I+          GK P   +  +VLLV   EGY  L EL++R +  + G+ QS 
Sbjct: 62  IGAEIFIE--------GLGKEP-GVLTRLVLLVQNMEGYLSLSELLARAWTQNVGRGQSQ 112

Query: 130 RIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             C L WL+E+ + GLI L+G  +GP+         + A +  L    +F  R Y+ LQR
Sbjct: 113 AACKLEWLEEL-SGGLIALSGAQAGPLGVPLLQGQGERAAELALKLAGMFPHRFYIELQR 171

Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D       V+LA   +LP+VAT+   F   +DYEAH+  + ++   ++    R R
Sbjct: 172 AGRPEDEPHVIAAVKLAARLKLPVVATHPVQFAERQDYEAHEARVCISEGEILGNPRRVR 231

Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK-ECDDIQK 305
             T + Y K+ +EM ++F+D+P AL NTVEIA+RC+  L +  P LP F      + ++ 
Sbjct: 232 KFTEEQYFKSTAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFVSEGVRM 291

Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             ++  R ++  GLEVRLA     A  +      Y +RL+FE+N I  M F GYFLIV D
Sbjct: 292 PIDDFFRQESFEGLEVRLAHLYPDAAKRDAERPRYVERLEFEINTILNMGFPGYFLIVGD 351

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           FI+WAK+N  PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 352 FIKWAKENGCPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDF 411

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           CQ  RD VI YV++KYG   V+QI TFG++ A+AA+RDVGR L M Y   D + KLIPN 
Sbjct: 412 CQGNRDRVIDYVKDKYGRNAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNK 471

Query: 483 PAHPVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
           P   V+LQ              AI  + +  +    +  V  L+E++QKLEG+ R+   H
Sbjct: 472 PGMSVTLQYPPEKKIEGDKNNYAIEMEPQLAQRIEKEEEVRMLVELAQKLEGMTRNIGMH 531

Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
           A G++I    L+   P+Y+   SD  V+Q++   +E  GL+KFDFLGL TLT+L+ + DF
Sbjct: 532 AGGVLIAPGKLTDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAKDF 591

Query: 589 LAQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
           +  R    +      IP  D  TY L +   T  +FQ ES GM+  L+  +P  +ED+IA
Sbjct: 592 IVARHKGQENFAFENIPLKDAATYRLFSEGKTEAVFQFESRGMQGMLKDARPTRLEDLIA 651

Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
           L +LYRPGP+D I  +  RK+G+E++   HP +  ML ET G+++YQEQVMQ AQ+L GY
Sbjct: 652 LNALYRPGPMDLIPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGY 711

Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKS 764
           SL  AD+LRRAMGKK  EEM + +E+F +GA + +GI +  A  IF+L+ KFA YGFNKS
Sbjct: 712 SLGGADLLRRAMGKKKLEEMAEHREKFRAGALATHGIPQDKADEIFDLMEKFAGYGFNKS 771

Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNT 823
           HAAAY++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA + F I   PP VN 
Sbjct: 772 HAAAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKLLFEDAQKNFGITFEPPDVNR 831

Query: 824 PCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRV 881
               F+ V D  I Y L A+KG G      ++ A  +  PF SL DFC R+D +++N+R 
Sbjct: 832 GNYRFEPVTDKVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINKRT 891

Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITL 940
           +E+L+ AGA D    +R  L+ S+D   ++A            +IF   E G+ + +  L
Sbjct: 892 VEALIKAGAFDAIQQNRAALIASVDRAFEFAS--ATAANAAQVDIFGDAEHGSATAEPDL 949

Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLD 969
              +      R   E+  +GFY SGH  D
Sbjct: 950 VDATPWGVKERLTLEKTAIGFYLSGHLFD 978


>gi|303253323|ref|ZP_07339472.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 2 str. 4226]
 gi|307248125|ref|ZP_07530153.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 2 str. S1536]
 gi|302648005|gb|EFL78212.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 2 str. 4226]
 gi|306855302|gb|EFM87477.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 2 str. S1536]
          Length = 1158

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1059 (39%), Positives = 621/1059 (58%), Gaps = 72/1059 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS +S++     +  ++    A+   A+A+TD +N    ++F  +A  +G++PI
Sbjct: 6    FVHLKVHSDFSMINSLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKPI 65

Query: 71   IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IG  + +    D +D  ++T              LL     GY  +  L+S+ Y   QG 
Sbjct: 66   IGADIFVRPEPDSEDFFELT--------------LLAKNNTGYHNITLLLSKAY--QQGY 109

Query: 127  QSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                +   +WL E+  EG+I+L+G  +G + +A    +   A++ +  +++ F +  Y+ 
Sbjct: 110  VEFPLVEKAWLAEL-NEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPNHYYLA 168

Query: 186  LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  +    
Sbjct: 169  LCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPK 228

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP+  +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++    LP F   +    
Sbjct: 229  RPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTGDLS-- 286

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLIV
Sbjct: 287  ---TEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIV 343

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 344  MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 403

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KLIP
Sbjct: 404  DFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIP 463

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 464  PDPGMTLA-KAFDAEPKLPELYEADEEVKELIDMARKLEGVTRNAGKHAGGVVIAPTAIT 522

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR  +     
Sbjct: 523  DFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEP 582

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+
Sbjct: 583  VRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPL 642

Query: 656  DNIVVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ++ +V N  +RK+G E++          S+ P++DP    T GVI+YQEQVMQIAQ+L+G
Sbjct: 643  ESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDP----TYGVIVYQEQVMQIAQVLAG 698

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            Y+L  AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNKS
Sbjct: 699  YTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKS 758

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+ 
Sbjct: 759  HSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSG 818

Query: 825  CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVL 882
               F V +   I Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR  
Sbjct: 819  KHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTF 878

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E L+ +GA D  G  R  L+++L++  K         +++H  + A  +      +T   
Sbjct: 879  EGLIMSGAFDKLGPHRAALMKNLEDALK--------ASDQHSKMEALGQSDMFGVLTETP 930

Query: 943  FSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
              V+N+             E E+  LG Y SGHP+  +   L         E   T RG 
Sbjct: 931  EEVQNAYANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQ 990

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +A +++  +   T++GSR+G  T  + + + +   F
Sbjct: 991  VVTVAGIIMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|239816093|ref|YP_002945003.1| DNA polymerase III, subunit alpha [Variovorax paradoxus S110]
 gi|239802670|gb|ACS19737.1| DNA polymerase III, alpha subunit [Variovorax paradoxus S110]
          Length = 1172

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/989 (42%), Positives = 594/989 (60%), Gaps = 42/989 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL++H+ +S+++G   ++ ++   AAD+QPA+AITD NNLF A++F ++  + G++P+
Sbjct: 2   FVHLRLHTEFSVVDGTNRIDEVVKAAAADKQPALAITDLNNLFGAVKFYKQGRSKGVKPV 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK-QSV 129
           IG ++ I+          GK P   +  IVLLV   EGY  L EL++R +  + G+ QS 
Sbjct: 62  IGAEIFIE--------GLGKEP-GVLTRIVLLVQNMEGYLHLSELLARAWTQNVGRGQSQ 112

Query: 130 RIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             C L WLQE+   GLI L+G  +GP+         + A +  L    +F  R Y+ LQR
Sbjct: 113 AACKLEWLQEL-QGGLIALSGAQAGPLGAPLLQGQEERAAELALQLAGMFPHRFYIELQR 171

Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D       V+LA    LP+VAT+   F   +DYEAH+  + ++   ++    R R
Sbjct: 172 AGRPEDEPHVIAAVKLAARLRLPVVATHPVQFAERQDYEAHEARVCISEGEILGNPRRVR 231

Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             T + Y K+ +EM ++F+D+P AL NTVEIA+RC+  L +  P LP F      +  + 
Sbjct: 232 KFTEEQYFKSSAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFISEGVRM 291

Query: 307 EENEL-RNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             +E  R ++  GLE RLA        +      Y +RL+FE+N I  M F GYFLIV D
Sbjct: 292 PIDEFFRQESFLGLEERLAHLYPDPARREAERPRYVERLEFEINTILNMGFPGYFLIVGD 351

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           FI+WAK N  PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 352 FIKWAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDF 411

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           CQ  RD VI YV++KYG + V+QI TFG++ A+AA+RDVGR L M Y   D + KLIPN 
Sbjct: 412 CQGNRDRVIDYVKDKYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNK 471

Query: 483 PAHPVSLQ------AIADDSRFR---EARLA-----DPSVDRLLEISQKLEGLYRHASTH 528
           P  PV++Q         D + +    E +LA     +  V  L+E++QKLEG+ R+   H
Sbjct: 472 PGQPVTIQYPPNPKVEGDKNNYAIEMEPQLAARIEKEEEVRMLVELAQKLEGMTRNIGMH 531

Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
           A G++I    L+   P+Y+   SD  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F
Sbjct: 532 AGGVLIAPGKLTDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAKEF 591

Query: 589 LAQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
           + +R    +      I  DD ETY L +   T  +FQ ES GM+  L+  +P  +ED+IA
Sbjct: 592 IVKRHKGQENFAYENIKLDDRETYKLFSEGKTEAVFQFESRGMQGMLKDARPTRLEDLIA 651

Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
           L +LYRPGP+D I  +  RK+G+E++   HP +  ML ET G+++YQEQVMQ AQ+L GY
Sbjct: 652 LNALYRPGPMDLIPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGY 711

Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKS 764
           SL  AD+LRRAMGKK  EEM + +E+F +GA S +GI +  A  IF+L+ KFA YGFNKS
Sbjct: 712 SLGGADLLRRAMGKKKLEEMAEHREKFRAGALSTHGIPQDKADEIFDLMEKFAGYGFNKS 771

Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNT 823
           HAAAY++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA + F I   PP VN 
Sbjct: 772 HAAAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAQKNFGITFEPPDVNR 831

Query: 824 PCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRV 881
               F+ V D  I Y L A+KG G      ++ A  +  PF SL DFC R+D +++N+R 
Sbjct: 832 GNYRFEPVTDKVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINKRT 891

Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITL 940
           +E+L+ AGA D    +R  L+ S+D  + +             +IF   E G+ + +  L
Sbjct: 892 VEALIKAGAFDSIQQNRASLIASVD--RAFEFAAATEANAAQVDIFGDSEHGSATQEPEL 949

Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLD 969
              +      R   E+  +GFY SGH  D
Sbjct: 950 VDATPWGVKERLTFEKTAVGFYLSGHLFD 978


>gi|307546379|ref|YP_003898858.1| DNA polymerase III subunit alpha [Halomonas elongata DSM 2581]
 gi|307218403|emb|CBV43673.1| DNA polymerase III, alpha subunit [Halomonas elongata DSM 2581]
          Length = 1169

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1056 (40%), Positives = 619/1056 (58%), Gaps = 55/1056 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS +SL++G + L  ++        PA+A+TD  NLF+ +++   A  AG++P+
Sbjct: 5    FVHLRVHSEFSLVDGLIRLKPLIKAAVEQGTPALALTDEANLFALVKYYTGAQGAGLKPL 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG         +L + N      P    + LL   A GY+ L EL+SR ++  Q +    
Sbjct: 65   IGS--------DLWLANPHDEEHPY--RLTLLAMDATGYRNLTELISRGWVEGQRQGRAL 114

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            +  SW+    +EGLI L+GG  G I R    +    A   L  +   F  R Y+ L R  
Sbjct: 115  LERSWVM-AQSEGLIALSGGREGDIGRHLLSDHHAEARALLDEWNAAFPGRYYLELTRTG 173

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +       V LA   + P+VATN+  FL  ED+ AH+  +A+     +    R R  
Sbjct: 174  RALEEECVHLSVDLAVETQTPVVATNDVRFLEREDFWAHETRVAIGEGKALDDPRRERHY 233

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + YLK   EM  +FSD+PEALEN+V IA RC+  +++    LP +   E       +E
Sbjct: 234  TEEQYLKTPEEMAELFSDIPEALENSVMIAARCNVDVRLGEIFLPEYGIPEG----MTQE 289

Query: 309  NELRNKAVAGLEVRL----------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
               R  +  GL  RL            GA      A+ YR+RLDFEL++I +M F GYFL
Sbjct: 290  EFFRKISHDGLTERLDFLYPAERYPRDGAEYAEIDAR-YRKRLDFELDIILQMGFPGYFL 348

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFIQWAK N++PVGPGRGSGAGS+ AYA  ITD+DPL + LLFERFLNP+R+SMPDF
Sbjct: 349  IVMDFIQWAKDNDVPVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMPDF 408

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC ++RD VI YV  +YG   V+QI+TFG++ AKA +RDV RA   PYS  D+L KL
Sbjct: 409  DVDFCMEKRDRVIEYVAERYGRNAVSQIVTFGTMAAKAVVRDVARAQGKPYSLGDKLSKL 468

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP +    +  +AI D+ + +E   AD     + E++ KLEG+ R    HA G+VI    
Sbjct: 469  IPFEVGMTLG-KAIEDEPQLKEFLEADEEAQEIWEMALKLEGITRGTGKHAGGVVIAPTK 527

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGV 594
            L+   P+  D        Q++   IE AGL+KFDFLGL+TLT++  +++ +    A RG 
Sbjct: 528  LTDFSPLLCDEDGSGLRVQYDKNDIEDAGLVKFDFLGLRTLTIIDWAVEMVDKVRAARGE 587

Query: 595  K-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            + +++  IP DD  T+ +L    T  +FQLES GM++ ++ + PD +ED+IALV+L+RPG
Sbjct: 588  EPLNIDAIPLDDVPTFDMLKKAETTAVFQLESRGMKELIKRLLPDSLEDMIALVALFRPG 647

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V  + NRK+G+ +I   HP     L+ P+L+ T G+I+YQEQVMQIAQ+++GYS
Sbjct: 648  PLQSGMVDDFINRKHGRAEISYPHPDYQHELLKPVLEPTYGIILYQEQVMQIAQVMAGYS 707

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L +AD+LRRAMGKK  EEM KQ+  F+ G ++NGI K +A NIF+L+ KFA YGFNKSH+
Sbjct: 708  LGQADMLRRAMGKKKPEEMAKQRAGFMEGCAENGIDKDLAGNIFDLVEKFAGYGFNKSHS 767

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQTAW+K HYP  F+AA ++ EMDN++K+    ++ R   + + PP+VN    
Sbjct: 768  AAYALVSYQTAWLKAHYPGPFMAAVLSTEMDNLDKVVPLIEECRSLGLTVTPPNVNVGGY 827

Query: 827  DFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884
             F V  + R+ Y L AI+GVG      I+EA  A+  F  L DFC RVD +++N+R LE+
Sbjct: 828  KFTVDAEGRVIYGLGAIRGVGEGPIGAIVEAREAEGDFRDLFDFCRRVDPQRMNKRTLEA 887

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT----NKHENIFAHEKGTFSDKITL 940
            L+ AGALD  G SR  L  SLD+  K A   + N+     +     FA+E    +     
Sbjct: 888  LIRAGALDNLGPSRAVLAASLDDALKAAAQSQTNQNLGMMDMFGEAFANEPDDDAADAYA 947

Query: 941  EKFSVENSS--VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IR 996
            +   V + S   R   E+  LG Y +GHP+D Y+  L +         +  ++ +    R
Sbjct: 948  DYRRVRDWSDKERLAGEKDTLGLYLTGHPIDEYEHELSRF----VSTRIVDLKPSREPQR 1003

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +A +VV  +  K+++G  + +VT  +     EA+ F
Sbjct: 1004 VAGLVVGVRTMKSKRGDTMAFVTLDDRTGRIEASLF 1039


>gi|166712747|ref|ZP_02243954.1| DNA polymerase III subunit alpha [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 1196

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/1009 (41%), Positives = 604/1009 (59%), Gaps = 64/1009 (6%)

Query: 11  FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56
           FVHL VH+ +SL +  + +               N+L +      PA+A+TD NNLF+ +
Sbjct: 6   FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVEIDMPALAVTDLNNLFALV 65

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           +F + A   GI+PI G  + I             TP  T   + LL    EGY  L  L+
Sbjct: 66  KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113

Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           +R ++     +  V I   WLQ  G   L  L G +S    R F    + +AE++L  ++
Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRNS-LAGRLFSEGRADLAEQQLADWQ 171

Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           ++FGD L++ L R    G +R+ +   +  A    LP+VA+N++ FL   D+ AH+  + 
Sbjct: 172 RVFGDGLHLELTRTGREGEERFNQF-ALNAAGVRGLPVVASNDARFLYASDFNAHEARVC 230

Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
           ++   V+    RPR   D  YLK+  EM ++F+D+P+A++NT  +A+RC+  +++    L
Sbjct: 231 ISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFL 290

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           P +   E + +    ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I  M 
Sbjct: 291 PAYPVPEDETL----DSWIRSQSRDGLAARLEKSPIAPGKTRQDYVDRLEFELDTIINMG 346

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R
Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 406

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
           +SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y  V
Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLV 466

Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADP----------SVDRLLEISQKLEGLY 522
           D + KLIPN     ++L+    + +  ++ +A P           V  L++++++LE L 
Sbjct: 467 DSVAKLIPN--ILGITLKDAMGEGK--DSEMASPELIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
           R+A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+T
Sbjct: 523 RNAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582

Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632
           LT++  ++  +  R  +     VD++ IP DD  TY  +   G  G +FQ ESSGMR+ L
Sbjct: 583 LTIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642

Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQ
Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEIILKDTYGIMVYQ 702

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870
            + + PP VN     F+    + I Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 823 GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882

Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
           RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883 RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 931 KGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
             + S  ++ L +           +E+  LGFY SGHP D ++  +R++
Sbjct: 943 DPSASAMRLDLPESKEWPLGQLLTSERETLGFYLSGHPFDPHREEVREL 991


>gi|90020753|ref|YP_526580.1| DNA polymerase III subunit alpha [Saccharophagus degradans 2-40]
 gi|89950353|gb|ABD80368.1| DNA polymerase III, alpha subunit [Saccharophagus degradans 2-40]
          Length = 1173

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1064 (39%), Positives = 620/1064 (58%), Gaps = 66/1064 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL+V + +SL++  + +  ++ + A  Q PAIA+TD +N F  ++F + A  AG+
Sbjct: 2    SSQFVHLRVRTEFSLVDSIIRVKPLVARAAQAQMPAIAVTDFHNFFGLVKFYKAAQGAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI GC        + +M    +   P +    LL    EGY+ + EL+S  Y   Q   
Sbjct: 62   KPICGC--------DFRMEPLDEESNPAI--FTLLAMNPEGYRNITELISLSYQKGQKHG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL++  + G+I L+GG  G + +A   N    AE  L  +  ++ +R Y+ LQ
Sbjct: 112  EPYIKFEWLEKF-SAGVIALSGGRVGEVGQALVGNRQVDAEAALQRWIDVYPNRFYIELQ 170

Query: 188  R--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +RY   + + LA  ++LP+VATN+  FL ++ ++ H+  + +     +    R
Sbjct: 171  RTGRENEERYLH-KAMALAEKYQLPVVATNDVRFLDQDLFDVHEARVCIGEGRALDDPRR 229

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R  T   YLK   EM  +FSD+PEA+ENTVEIA+RCS  +Q+    LP +   E     
Sbjct: 230  ERKYTDQQYLKTAEEMQELFSDIPEAIENTVEIAKRCSIEIQLGTYFLPEYPIPEG---- 285

Query: 305  KEEENELRNK-AVAGLEVRLAQGAIAK------GYHAQDYRQRLDFELNVIARMKFSGYF 357
               EN    K +  GLE RL    I K          Q Y  RL FEL++I +M F GYF
Sbjct: 286  -MTENSFFEKISYEGLERRLK--TILKEDDPDYATKKQPYLNRLKFELDIIIQMGFPGYF 342

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK +NIPVGPGRGSGAGS+ AY L ITD+DPL++ LLFERFLNP+R+SMPD
Sbjct: 343  LIVMDFIQWAKDHNIPVGPGRGSGAGSLVAYVLDITDLDPLQYDLLFERFLNPERVSMPD 402

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC ++RD+VI YV + YG + V+QIITFG++ AKA +RDV R     Y   D+L K
Sbjct: 403  FDVDFCMEKRDQVISYVADNYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSK 462

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP DP   ++ +A   +   RE    D     + +++ KLEG+ R+   HA G+VI   
Sbjct: 463  MIPPDPGMTLT-KAFEQEEPLREFLAMDGDGQEIWDMALKLEGITRNVGKHAGGVVIAPT 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             L    P+Y D      VTQF+   +E+AGL+KFDFLGL+TLT++  ++  +  +  K  
Sbjct: 522  RLVDFAPLYCDESGSGLVTQFDKNDVEEAGLVKFDFLGLRTLTIIDWAVKMIDAQRTKLG 581

Query: 596  ---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D+S IP DD +T+ LL    T  +FQLES GM+  +  ++PD +E++IALV+L+RP
Sbjct: 582  DPPLDISAIPLDDAKTFALLKRAETTAVFQLESRGMKDLITRLKPDTLEEMIALVALFRP 641

Query: 653  GPIDNIVV--YNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V  + NRK+G+ ++        H  + P+L+ T GVI+YQEQVMQIAQ L+GY
Sbjct: 642  GPLQSGMVDDFINRKHGRAQVAYPDAKYQHECLQPILEPTYGVIVYQEQVMQIAQELAGY 701

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL  AD+LRRAMGKK  EEM KQ+  F  GA+  GI   +A+ IF+L+ KFA YGFNKSH
Sbjct: 702  SLGGADLLRRAMGKKKPEEMAKQRSTFQDGAASKGIDPELAIKIFDLVEKFAGYGFNKSH 761

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA++SYQTAW+K H+P  F+AA+M+ +MD  +K+  F ++ R   + ++PP VN   
Sbjct: 762  SAAYALVSYQTAWLKAHFPAHFMAATMSSDMDKTDKVVTFIEECRNMKLNLLPPDVNRGE 821

Query: 826  VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLE 883
              F V  DN + Y L AIKG+G      I+ A  D   F  L DFC+RVDSKK+N+R LE
Sbjct: 822  FQFTVDDDNNVIYGLGAIKGLGEGPVEAIIAARKDGGDFKDLFDFCARVDSKKINKRALE 881

Query: 884  SLVFAGALDCFG------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEK 931
            +LV +GALD  G      Y R  +  ++    K A+    N      ++F      A E+
Sbjct: 882  ALVRSGALDNLGPGIDVDYDRAVMAAAVPEAVKAAEQSAANANAGMSDLFGEVVPVASER 941

Query: 932  G-TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
            G  +S+   + ++S++    R   E+  LG Y +GHP+D Y   L+ +        +  +
Sbjct: 942  GDAYSEFTHVRRWSLKE---RLNGERDTLGLYLTGHPIDEYDEELKHL----VSNRIVNL 994

Query: 991  RGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +    ++A +VV+ +  KT++G ++ +VT  +     E   F
Sbjct: 995  KPDRAKQKVAGLVVAFRVMKTKRGDKMAFVTLDDRTGRLETAVF 1038


>gi|188992333|ref|YP_001904343.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv.
            campestris str. B100]
 gi|167734093|emb|CAP52299.1| DNA polymerase III alpha subunit [Xanthomonas campestris pv.
            campestris]
          Length = 1219

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/1009 (40%), Positives = 605/1009 (59%), Gaps = 64/1009 (6%)

Query: 11   FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56
            FVHL VH+ +SL +  + +               N+L +      PA+A+TD NNLF+ +
Sbjct: 28   FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNNLFALV 87

Query: 57   EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            +F + A   GI+PI G  + I             TP  T   + LL    EGY  L  L+
Sbjct: 88   KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 135

Query: 117  SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +R ++     +  V I   WLQ  G   L  L G  S    R F    + +AE++L  ++
Sbjct: 136  TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFAEGRADLAEQQLADWQ 193

Query: 176  KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++FGD L++ L R    G +R+ +   +  A    LP+VA+N+  FL   D+ AH+  + 
Sbjct: 194  RVFGDGLHLELTRTGREGEERFNQF-ALHAAGVRGLPVVASNDVRFLYASDFAAHEARVC 252

Query: 234  VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            ++   V+    RPR   D  YLK+  EM ++F+D+P+A++NT+ +A+RC+  +++    L
Sbjct: 253  ISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADVPDAIDNTLALAQRCNIEMRLGTYFL 312

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P +   E + +    ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I +M 
Sbjct: 313  PAYPVPEDETL----DSWIRSQSRDGLAARLEKNPIAPGKTRQDYVDRLEFELDTIIKMG 368

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R
Sbjct: 369  FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 428

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y  V
Sbjct: 429  VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLV 488

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADP----------SVDRLLEISQKLEGLY 522
            D + KLIPN     ++L+    + +  ++ +A P           V  L++++++LE L 
Sbjct: 489  DSVAKLIPN--ILGITLKDAMGEGK--DSEMASPELIQRYQVEDDVRDLMDLARQLEDLT 544

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRD----VRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PLS+  P++ +     R   PVTQF+   +E+ GL+KFDFLGL+T
Sbjct: 545  RNAGKHAGGVVIAPEPLSEFCPLFAEHDEGGRGKNPVTQFDKNDVEEVGLVKFDFLGLRT 604

Query: 579  LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632
            LT++  ++  +  R  +     VD++ IP DD  TY  +   G  G +FQ ESSGMR+ L
Sbjct: 605  LTIIDWAVKAINVRHARAGIDPVDITAIPLDDAPTYKGVFASGNTGAVFQFESSGMRRLL 664

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +N RK+G++ I+   P  + +LK+T G+++YQ
Sbjct: 665  KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQDIIYPDPRTEAILKDTYGIMVYQ 724

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 725  EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAQKADEIFDL 784

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 785  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 844

Query: 813  NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             + ++PP VN     F+    + I Y L AIKGVG      I+E    + P+ +L DFC+
Sbjct: 845  GLTVLPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERLRNGPYTTLLDFCT 904

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929
            RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 905  RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 964

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
            +    + ++ L +            E+  LGFY SGHP D ++  +R++
Sbjct: 965  DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVREL 1013


>gi|304312463|ref|YP_003812061.1| DNA polymerase III alpha subunit [gamma proteobacterium HdN1]
 gi|301798196|emb|CBL46418.1| DNA polymerase III alpha subunit [gamma proteobacterium HdN1]
          Length = 1173

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1043 (40%), Positives = 620/1043 (59%), Gaps = 36/1043 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P+FVHL++H+ YSL++G + +  +++K A    PA+A+TD + L+  ++F +    AG+
Sbjct: 19   APTFVHLRLHTEYSLVDGLVRVKKLVEKAAELGMPAVAVTDYSGLYGLVKFQKYGLPAGV 78

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G         ++ + N      P++  I LL    +GY+ + +LVS  +L  Q   
Sbjct: 79   KPIYGA--------DIWLANLDVEGSPSL--ITLLAMDVQGYRNITKLVSEAFLTGQRNG 128

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +    L +   +G+I L+GG  G + +A        AE+       L+ DR Y+ +Q
Sbjct: 129  KAIVSRELLHQF-ADGIICLSGGRQGELGQALLQERPDRAEQIAREMAALYPDRFYLEVQ 187

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDR 245
            R  R  D       V LA    LP+VATN+  FL   DYEAH+V + + A  T+   +  
Sbjct: 188  RTERAGDETYLHLAVALADRFALPVVATNDVRFLKRSDYEAHEVRVCINAGWTLDDPRRE 247

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               +   YLK+  EMV++F+DLPEALENTVEIA+RC+  + +    LP +   E   I  
Sbjct: 248  MNYSDQQYLKSPQEMVALFADLPEALENTVEIAKRCNVEIPLGTYFLPDYPVPEGMTI-- 305

Query: 306  EEENELRNKAVAGLEVRLA-QGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVA 361
              ++ L ++A  GL  RLA    I +   A+    Y +RL  EL+ I +M F GYFLIVA
Sbjct: 306  --DSYLVHQAEEGLNARLAFLYDITRPDFAEIRARYDERLRIELDCIIKMGFPGYFLIVA 363

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQWAK N +PVGPGRGSGAGS+ AYA+ ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 364  DFIQWAKNNGVPVGPGRGSGAGSLVAYAIKITDLDPLEYDLLFERFLNPERISMPDFDVD 423

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RD VI YV  KYG + V+QIITFGS+ AKA +RDVGR     Y  VDR+ KLIP 
Sbjct: 424  FCMEGRDRVIDYVAEKYGRDAVSQIITFGSMAAKAVVRDVGRVQGKSYGFVDRIAKLIPF 483

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +  +A+  + + +E   AD  V  LL+++ KLEG+ R    HA G+VI    L+ 
Sbjct: 484  ELGMTLE-KAMEQEPQLKELYNADEEVHDLLDMALKLEGICRGVGKHAGGVVIAPSALTN 542

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
             VP+Y D      VTQ++   +E+AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 543  YVPLYCDETGHNLVTQYDKDDVEQAGLVKFDFLGLRTLTIIDWALGIINPRLQRKGEAAV 602

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ I  DD  T+ LL +  T  +FQLES GM+  ++ ++P   EDIIALV+L+RPGP+ 
Sbjct: 603  DIARIRLDDPATFRLLQSAETTAVFQLESRGMKDLIKRLKPSVFEDIIALVALFRPGPLG 662

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +V  +  RK+GK+ +   HP + P+L  T G I+YQEQVM I Q+L+GYSL  AD+LR
Sbjct: 663  SGMVDDFIARKHGKQAVTYPHPDLKPVLDTTYGTILYQEQVMLIPQVLAGYSLGGADILR 722

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  +EM KQ+  F  G +KN I + +A  IF+ + +FA YGFNKSH+AAYA++SY
Sbjct: 723  RAMGKKKADEMAKQRSIFTDGCAKNQIDEKLAGEIFDTMEEFAKYGFNKSHSAAYALVSY 782

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-N 833
            QTAW+K HYP  F++A ++ +M N +KI  F  + R+  +QI+ P VNT    F V D N
Sbjct: 783  QTAWLKAHYPAGFMSAVLSADMHNTDKIVIFIDECRRMGLQIVSPHVNTSAYKFDVNDAN 842

Query: 834  RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L AIKG+G      I+EA  A  PF  L +FC RVD KKLNRRVLE+L+ +GA+D
Sbjct: 843  HIVYGLGAIKGLGAGPIEAIIEARDAGAPFTDLFEFCRRVDMKKLNRRVLEALIRSGAMD 902

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT--FSDKITLEKFSVENSSV 950
              G  R  +L SLD   K A    ++      ++F    G   F+   ++ K +  +  +
Sbjct: 903  GMGPDRAIMLASLDEAAKAAGQAAESADAGMMDLFGELGGAEEFTPAWSVAKPASPDELL 962

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRK-MGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
              + E+  LG Y +GHP+D ++  L   +  K  +   +  R     +A +V++ +  K 
Sbjct: 963  --QGEKDTLGLYLTGHPIDQFEEELSHFISSKICDVKPSQSRDQKSIIAGLVIAVRTMKN 1020

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
            ++G R+G++T  + +   E + F
Sbjct: 1021 KRGDRMGFLTLDDKSGRMEVSLF 1043


>gi|296136875|ref|YP_003644117.1| DNA polymerase III, alpha subunit [Thiomonas intermedia K12]
 gi|295796997|gb|ADG31787.1| DNA polymerase III, alpha subunit [Thiomonas intermedia K12]
          Length = 1146

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/983 (42%), Positives = 587/983 (59%), Gaps = 31/983 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +VHL+ H+ YS+++GAL +++++     D Q A+AITD NNLF+ + F + A  AG++PI
Sbjct: 3   YVHLRTHTEYSIVDGALRVDDMVPAAVRDGQGALAITDFNNLFATVRFYKAALDAGVKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IGC +         +    + P      ++LLV    GY  L +L+SR +L +Q +    
Sbjct: 63  IGCDV---------LLGSARHP-GQFTRLLLLVQNRTGYLNLCDLLSRAWLDNQQRGRAV 112

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-- 188
           +   WL+    EGLI L+G   G I +A     +  A         +F  R Y  LQR  
Sbjct: 113 VQWEWLEGGLAEGLIALSGAHEGAIGQALLQGDTATARDLTRQHAAVFEGRFYFELQRGG 172

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
           H   + + ++  V LA    LP+VAT+   FL  +D++AH+  + +A    +    R R 
Sbjct: 173 HAACEPHVQA-AVPLAAELGLPVVATHPVQFLKADDFDAHEARVCIAEGETLGNPRRQRK 231

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            T   Y K+++EM ++F+D+P AL NTV IA+RC+ +L +  P LP F   E     K  
Sbjct: 232 FTAQQYFKSQAEMEALFADVPSALANTVAIAQRCNLVLDLGKPQLPLFPTPEGLTPAKF- 290

Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               R +A  GLE RLA     A  +      Y+QRL++EL +IA+M F GYFLIVADFI
Sbjct: 291 ---FRQQAQEGLEQRLAVLYPQADEREAARPRYQQRLEYELGIIAKMGFEGYFLIVADFI 347

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            WAK N  PVGPGRGSGAGS+ AY+L ITD+DPL ++LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 348 NWAKNNGCPVGPGRGSGAGSLVAYSLRITDLDPLEYALLFERFLNPERVSMPDFDIDFCQ 407

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           + RD VI YV+ KYG E V+QI TFG++ A+AA+RDVGR L + Y+  D + KLIP  P 
Sbjct: 408 ENRDRVIDYVKEKYGVEAVSQIATFGTMAARAAVRDVGRVLDLSYTFCDGIAKLIPAKPG 467

Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             +++  A+  +    +    +  V +LL+++Q+LEGL R+   HA G++I    L+   
Sbjct: 468 QHITIADALKQEPLLAQRYEEEEEVRQLLDLAQQLEGLPRNIGMHAGGVLIAPGKLTDFC 527

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSL-- 600
           P+Y    S   V+QF+   +E AGL+KFDFLGL TLT+L+     + +    + D  L  
Sbjct: 528 PLYAQPGSTDAVSQFDKDDVEAAGLVKFDFLGLATLTILELGAQLIRRNHPDRADFKLED 587

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
           IP DD ++Y L+    T+ +FQLES GM+  L   +PD  EDIIALV+LYRPGP+D I  
Sbjct: 588 IPLDDPKSYKLMAKGDTVAVFQLESRGMQGMLRDAKPDRFEDIIALVALYRPGPMDLIPT 647

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
           Y  RK GKE +V   P +  +L+ET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMGKK
Sbjct: 648 YCARKAGKEDVVYPDPRMASVLEETYGIMVYQEQVMQVAQVIGGYSLGGADLLRRAMGKK 707

Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             EEM + +  F  GA+KNGI    A  IF+L+ KFA YGFNKSHAAAYA+++ QTAWMK
Sbjct: 708 KPEEMAQHRGIFAEGAAKNGIKPEKANEIFDLMEKFAGYGFNKSHAAAYALLAVQTAWMK 767

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSL 839
            HYP EFLAA+M++ +D+ +K+K   +DA+   I ++PP VN     F   D++ I Y+L
Sbjct: 768 AHYPAEFLAANMSIALDDTDKLKILVEDAQARGINVLPPDVNASQWRFDPVDSKTIRYAL 827

Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AIKG G      ++ A  ++PF SL DF  RVD  +LN+RVLE+L  AGA D     R 
Sbjct: 828 GAIKGNGQAAVEAMIAARQERPFTSLFDFAERVDRTRLNKRVLEALAKAGAFDSLHPERA 887

Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEKG----TFSDKITLEKFSVENSSVRFEN 954
            ++ +++    YA   E  R      ++FA +        + +  L +    +   +   
Sbjct: 888 AVMAAVETAMDYATQREAARQQAGLFDLFAADAADGGHNPAHEPRLPEVEPWDLRTKLSF 947

Query: 955 EQRVLGFYFSGHPLDVYKPILRK 977
           E+  +G+Y SGH  D     +R+
Sbjct: 948 EKTAIGYYLSGHLFDASAEEVRR 970


>gi|118594636|ref|ZP_01551983.1| DNA polymerase III, alpha subunit [Methylophilales bacterium
            HTCC2181]
 gi|118440414|gb|EAV47041.1| DNA polymerase III, alpha subunit [Methylophilales bacterium
            HTCC2181]
          Length = 1154

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1033 (40%), Positives = 620/1033 (60%), Gaps = 46/1033 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PSF+HL+ HS YS+ +G + +   + K      PA+ +TD +NLF A++F + A  +GI+
Sbjct: 7    PSFIHLRCHSEYSITDGIVRIPEYIKKAVDTGMPALGLTDLSNLFGAVKFYKAATQSGIK 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PI+GC + I+ + N           P  P  + L     +GY  L EL+S+ +L +Q + 
Sbjct: 67   PILGCDVWIENETN-----------PDQPYRMALFCQNQQGYIHLSELLSKAFLTNQSRG 115

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +  SW+     +GLI L+G   G I      N    A++ L  ++ +FGDR Y+ +Q
Sbjct: 116  KAILKKSWVLN-AHDGLIALSGALKGNIGYLLDQNKIDEAQEELSAWRAIFGDRFYLEIQ 174

Query: 188  RHRGYDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            R+ G D  ++ Q       + LA  +++PLVAT+   F+  +D+ AH+    +A   V++
Sbjct: 175  RY-GSDARKKKQEEYIQKAIFLAVNNQVPLVATHPIQFMHTDDFRAHESKTCIADGYVLA 233

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             + RP+  TP+ Y K   EM+ +F D+P A  NTV IA+RC+F  Q+    LP F     
Sbjct: 234  DQRRPKDFTPEQYFKTPEEMLELFHDIPSATHNTVTIAKRCNFQFQLGEIFLPDFPIPNG 293

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAI---AKGYHAQDYRQRLDFELNVIARMKFSGYF 357
              I    E+ L  +A  GL+ RL    I    +      Y  RL+FE+ VI  M ++GYF
Sbjct: 294  TKI----EDYLLIEAKKGLDQRLEDLYIDLKEREDQIPKYLDRLNFEVKVINEMGYAGYF 349

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI W+K N+IPVGPGRGSGAGSV AY+L ITD+DPL ++LLFERFLNPDR+SMPD
Sbjct: 350  LIVADFINWSKSNHIPVGPGRGSGAGSVVAYSLGITDLDPLAYNLLFERFLNPDRVSMPD 409

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ+ RD VI YV+ KYG + V+QI TFG++ AKA LRDVGR L +PY+ VD + K
Sbjct: 410  FDIDFCQEGRDRVIDYVKQKYGSDSVSQIATFGTMAAKAVLRDVGRVLDLPYNFVDTIAK 469

Query: 478  LIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            L+P +    ++L+ AI  + + ++    +  V  L +++ +LEGL R+ S HA G++I  
Sbjct: 470  LVPLELG--ITLKDAIEKEPQIKDRIKKEEEVKELFDLALRLEGLVRNVSMHAGGVLIAP 527

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD----FLAQR 592
              +S   P+Y    ++  V+QF+   +E  GL+KFDFLGL+TLT++  +L+      +Q+
Sbjct: 528  TKISAFSPIYCQPGAEGIVSQFDKDDVEAVGLVKFDFLGLRTLTIVAMALENANHIRSQK 587

Query: 593  GVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            G   + L  IP DD  T+ LL    T  +FQLES GM+  L+  +PDC EDIIALV+LYR
Sbjct: 588  GEDPLQLESIPIDDKPTFDLLKASNTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYR 647

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+D I  +  RK+G++++   HP  + +LKET G+ +YQEQVMQIAQ+++GY+L  AD
Sbjct: 648  PGPMDLIPDFCKRKHGQQQVKYPHPATESILKETYGIAVYQEQVMQIAQVVAGYTLGGAD 707

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEMD Q+  F+ GA K+ +++  A ++F+LL KFA YGFNKSHAAAYA+
Sbjct: 708  LLRRAMGKKKIEEMDAQRATFVEGALKHELNQRQATDLFDLLEKFAGYGFNKSHAAAYAM 767

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KV 830
            I+YQT ++K HYP  F+AASM+ +M+N + +     D    NI ++PP++N     F  V
Sbjct: 768  IAYQTGYLKAHYPSAFIAASMSADMNNTDNVHMLFDDCVLNNITLLPPNINKSEYKFVPV 827

Query: 831  GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                I Y L A+KG G +    I+ E +A+ PF SL DF +R+D +K+NR+  ESL+ +G
Sbjct: 828  DHESILYGLGAVKGTGLSAIDIIIDERNANGPFTSLFDFAARLDLRKVNRKAFESLIRSG 887

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A D    +R  LL S++     A+     + N H+   A  +   + ++ L +  +    
Sbjct: 888  AFDEIEPNRATLLASVNLAITKAE-----QANAHQGQNALFEEFETTEVPLVEVGLWEER 942

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             +   E+  LGFYFSGHP   Y+ ++R+       E   T R     +A ++ +   + T
Sbjct: 943  KQLAEEKIALGFYFSGHPFKFYEKMIRQFVPNKLSE--LTPRDATYLIAGIISTIHMRMT 1000

Query: 1010 RKGSRIGWVTFSE 1022
             +G +I  VT  +
Sbjct: 1001 SRG-KIAIVTLDD 1012


>gi|124514840|gb|EAY56352.1| DNA polymerase III, alpha subunit [Leptospirillum rubarum]
          Length = 1201

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1053 (40%), Positives = 618/1053 (58%), Gaps = 37/1053 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL VH+ YSLL+GA  ++ ++ K  A+  PAIA+TD  NLF A+EF Q A  
Sbjct: 1    MSSTDQFVHLHVHTQYSLLDGANKIDPLIRKARAENMPAIAMTDHGNLFGAIEFFQTAKK 60

Query: 65   AGIQPIIGCQLDI------DMQD---NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
             G++PIIGC++ I      D QD        +Q K        ++LL     GY+ L+++
Sbjct: 61   HGVKPIIGCEVYITPRSRFDRQDLYFGGDGPHQAKKINNASFHLILLAENDTGYRNLLKI 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L +      RI L  L     EGLI L+G   G I        +  A      F+
Sbjct: 121  VSLSHL-EGFYYRPRIDLELLSR-HHEGLIALSGCLKGQISYMLTRGDTDRAYATAGLFR 178

Query: 176  KLFGDRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++FG   Y    +  G +  R    +++ L+    +PLVATN+  +L  ED   HD+L+ 
Sbjct: 179  EIFGPENYFFEVQANGLEDQRIANREIIGLSKKLSIPLVATNDCHYLEREDSVPHDILLC 238

Query: 234  VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +     +    R R   D  YLK   EMV  F +LPEA+ENT+ IA R    + +    +
Sbjct: 239  LQTGKTLEDPARLRFGSDEFYLKTPREMVRSFEELPEAIENTLRIADRIDVSIDLQTTHM 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--------YRQRLDFE 344
            P +         + +EN+ +   V  L VR ++  +   +            Y +RL+ E
Sbjct: 299  PSY---------RLDENQGQTTTVPELFVRTSREGLDARFQENTFSDTEKALYLERLERE 349

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            + VI +M + GYFLIV DFI+ A++  IPVGPGRGS AGSV A++L IT+IDP+RF LLF
Sbjct: 350  IQVIQKMGYEGYFLIVWDFIRKAREMGIPVGPGRGSAAGSVVAWSLRITNIDPIRFGLLF 409

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+S+PD D+DFC +RR EVI+YV ++YG +RVA I TFG++ AK ++RDVGR 
Sbjct: 410  ERFLNPERVSLPDIDVDFCMNRRGEVIQYVVDRYGMDRVAMIATFGTMGAKGSIRDVGRV 469

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L M Y++VDR+ K+IPN     +  +A+ ++   R     DP ++ L  +S+KLEG+ RH
Sbjct: 470  LGMTYAEVDRVAKMIPNSLDMTLE-KALEENPDLRALLEKDPRMEELFSLSRKLEGITRH 528

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            +S HAAG+VI   PL + VP+ R    ++ VTQF    +EK GL+KFDFLGL TLTL+Q 
Sbjct: 529  SSIHAAGVVISREPLLEHVPLMRGANGEI-VTQFTKDDVEKVGLVKFDFLGLTTLTLIQG 587

Query: 585  SLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            + + +           IP DD  TY LL+   TLGIFQLES GM   +  MQP+  ED+I
Sbjct: 588  AENRIQAHTPDFSADRIPLDDARTYRLLSEGKTLGIFQLESRGMTDLIMKMQPETFEDLI 647

Query: 645  ALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            AL++LYRPGPI++ +V  +  RK    +I    P ++P+L+ET GVI+YQEQVMQIA +L
Sbjct: 648  ALLALYRPGPINSGMVDDFIKRKKNPREIRYELPELEPVLRETYGVIVYQEQVMQIANVL 707

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +G+SL EAD+LRRAMGKK  EEM K +++F+ GA + G  K  A ++FEL+A FA YGFN
Sbjct: 708  AGFSLGEADLLRRAMGKKKPEEMAKMQDKFVDGAIRKGFPKEKATHVFELMAYFAGYGFN 767

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            KSH+AAYA+ISYQTA++K HYP+E  AA +T  +D+ EKI  F   A+   I+++ P +N
Sbjct: 768  KSHSAAYALISYQTAYLKAHYPLELWAALLTNALDDTEKIGVFLAGAKDMGIEVLAPDIN 827

Query: 823  TPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRR 880
                DF +   +RI + L A+K VG      I+EA A D PF    DF  R+  KK+NRR
Sbjct: 828  QSEFDFAILPGSRILFGLGAVKNVGKQAVDCILEARANDGPFVDFPDFLKRIVGKKVNRR 887

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
            V+E+L+ AGA    G  R   ++SLD++  +A+  +  + +  +++F+ ++G  S    L
Sbjct: 888  VIEALIRAGAFRSLGIRRSVAMESLDDLLAWAEKQKSGKGSLQKSLFSEDQGGRSSGPPL 947

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
             +    +  +    E+  LGFY + HP+  Y  +L K+  +      +   G  +R+ A+
Sbjct: 948  REVPEWDERMLLREEKNALGFYLTSHPMARYADLLLKLDTRSTRSLESVSEGETVRVFAV 1007

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V + ++ KT+KG ++  +T  +     EA  FP
Sbjct: 1008 VSALREVKTKKGDKMAQLTLLDMEGTIEAVLFP 1040


>gi|317485419|ref|ZP_07944298.1| DNA polymerase III [Bilophila wadsworthia 3_1_6]
 gi|316923378|gb|EFV44585.1| DNA polymerase III [Bilophila wadsworthia 3_1_6]
          Length = 1175

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1047 (40%), Positives = 625/1047 (59%), Gaps = 40/1047 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YSLL+GA+ LN++  +      PA AITD  NL+ A  F     + GI+P+
Sbjct: 4    FVHLHCHTEYSLLDGAIRLNDLCARAKDFGMPAAAITDHGNLYGAAYFYTTCKSYGIKPV 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTV-PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IGC++ +      K      + F  V   ++LL    EGY  L+ LVS+ +L D      
Sbjct: 64   IGCEVYV-----TKDHRDKDSEFSRVRHHLILLAKNNEGYHNLVRLVSKGFL-DGFHYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV--------AEKRLLTFKKLFGDR 181
            R+  + L++  +EGLI L+   +G I R     +  +        A ++   +  ++  R
Sbjct: 118  RVDKALLRQ-HSEGLIALSACLAGEIPRTLMGANKLITNGGTFDDAIRQTQEYMDIYDGR 176

Query: 182  LYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ +Q +   D+    +++++LA   ++PLVATN+  +L+ +D EAHDVL+ +     V
Sbjct: 177  FYLEVQANTLPDQATLNNKLLELAEHTKVPLVATNDCHYLNADDVEAHDVLLCIQTQAKV 236

Query: 241  SQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +   R R    D Y K+  EM   F  +PEAL NTV IA  C   +       P +   E
Sbjct: 237  NDAKRMRFEARDLYYKSAEEMEQAFKHIPEALSNTVRIAEECHVEMDFTHHYFPVYELPE 296

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               +      E +  A  GL+ RL           + Y  RL+ EL VI  M F GYFLI
Sbjct: 297  GMTLS----TEFQRLAREGLKQRLELHPDRDTIDPKIYWDRLEMELKVICEMGFPGYFLI 352

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI WAK N+IPVGPGRGS AGS+ A+AL IT++DPL ++L+FERFLN +R+S+PD D
Sbjct: 353  VQDFINWAKGNDIPVGPGRGSAAGSIVAWALRITNLDPLPYNLIFERFLNIERVSLPDID 412

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC+D+R  VI+YV  KYG + V+QI TFG ++AKA +RDVGRAL M + + DR+ KLI
Sbjct: 413  VDFCEDKRTRVIQYVSQKYGIDSVSQITTFGKMKAKAVVRDVGRALDMSFKETDRIAKLI 472

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P+D    +  +A+  +         D  + +L++IS +LEGL RHASTHAAG+V+ D+P+
Sbjct: 473  PDDLKMTIK-KALDAEPELATLYKEDQIIRKLIDISMRLEGLSRHASTHAAGVVVSDKPM 531

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DL 598
             + +P+YR  + +L VTQF+MK +EK GL+KFDFLGL+T+TL+  +L  + ++G K  +L
Sbjct: 532  DEYLPIYRGKKGEL-VTQFDMKMVEKVGLVKFDFLGLRTMTLIDNTLKAIEEQGKKAPNL 590

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             ++P  D +TY + +   T G+FQ+ESSGMRQ L  ++P+C EDIIA+++LYRPGP+ + 
Sbjct: 591  DILPLTDPDTYDVFSRGDTDGVFQVESSGMRQYLRMLRPNCFEDIIAMLALYRPGPLGSG 650

Query: 659  VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V  +  RK+G+  +    P ++  LK+T GVI+YQEQVMQIAQ+++GY+L  AD+LRRA
Sbjct: 651  MVDEFIKRKHGEVDVTYPLPSLEGCLKDTYGVIVYQEQVMQIAQIVAGYTLGGADLLRRA 710

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  E M K++  F+ GA KNG SK  A  IF+L+ KFA+YGFNKSH+AAYA+ISY T
Sbjct: 711  MGKKNAEAMAKERTLFVDGAVKNGTSKEKATEIFDLMEKFAEYGFNKSHSAAYALISYHT 770

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++KTH+ VEF+AA +T E+ N +KI K+    +  +I++  P V     +F V D  + 
Sbjct: 771  AYLKTHHKVEFMAALLTSEIGNQDKILKYIAACKDNDIEVRQPDVQVSRREFIVRDEAVV 830

Query: 837  YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y L  IK VG    R I+ A   D PF S  D C RV  +K+ +RVLESL+  GALDCFG
Sbjct: 831  YGLGGIKNVGDEAIREIVAAREKDGPFLSFLDLCIRVSLRKVTKRVLESLIKGGALDCFG 890

Query: 896  YSRMQLLQSLDNIQKYAQ-WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV---- 950
             SR  ++ ++D +   AQ  +++ ++N+   +    K    ++ +   FS E  S+    
Sbjct: 891  CSRAAMVAAIDPVVARAQKKIKEKQSNQISLLTLSPKKIEENQASGIGFSCEEESISEWD 950

Query: 951  -----RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                 RFE E   LGF+ + HPL  Y+  L ++ ++  E+         I+ A +V S +
Sbjct: 951  EDQKLRFEKE--ALGFFLTSHPLQPYRHELNRLDLRPLEDCREMADKATIKCAVLVTSIR 1008

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   ++G+R+ +V   +     E  FF
Sbjct: 1009 EILNKRGNRMAFVAVEDLTASGEVTFF 1035


>gi|221133300|ref|ZP_03559605.1| DNA polymerase III subunit alpha [Glaciecola sp. HTCC2999]
          Length = 1138

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/1030 (40%), Positives = 602/1030 (58%), Gaps = 38/1030 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G   +  +LD+      PA+A+TD  N+   ++F  +A   GI+PIIG    +    
Sbjct: 1    MMDGLNKVKPLLDECVNLSMPALALTDQMNMCGLVKFYSEAHNRGIKPIIGTDFWV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q  T  P +  + LL +   GY  +  L+S+ Y          I  +WL E   
Sbjct: 57   ------QDLTQSPNIFRLTLLATNNIGYNNITVLISKAYQRGHVNNRPVIDKAWLAE-HK 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-- 199
             G+I+L+G + G +  A   N+ + A + +  ++  F DR YV L R     R  E++  
Sbjct: 110  AGIIILSGATRGDLGEALLKNNQKAAHQIVEFYQTHFPDRYYVELIRT---GRVNENEYI 166

Query: 200  --VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKN 256
               V  A  + LP+VATN   F++ E++ AH++ +++     +    RP+  +P  Y+++
Sbjct: 167  RAAVAFAEQYALPVVATNEVCFIASENFAAHEIRVSIHDGYTLEDSRRPKHYSPQQYMRS 226

Query: 257  RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
              EMV +F D+PEA+ NTVEIA+RC+  +Q+    LP F   +        E+ L   + 
Sbjct: 227  AEEMVELFDDIPEAITNTVEIAKRCNVTVQLGTYFLPNFPTGDL-----STEDFLVKVSK 281

Query: 317  AGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
             GLE RL +       +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N IP
Sbjct: 282  EGLERRLLKLFPDETDRVEKRGEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGIP 341

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFDIDFC DRRDEVI +
Sbjct: 342  VGPGRGSGAGSLVAYALDITDLDPLEFDLLFERFLNPERVSMPDFDIDFCMDRRDEVIDH 401

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP+DP   ++ +A  
Sbjct: 402  VAQMYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPSDPGMTLA-KAFD 460

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
             + R  E   AD  V  LL +++ LEG+ R+A  HA G+VI    ++   P+Y D     
Sbjct: 461  VEPRLGELENADDDVKELLTMARILEGVTRNAGKHAGGVVIAPTQITDFSPLYCDDEGRN 520

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLL 612
            PVTQF+   +E AGL+KFDFLGL+TLT++Q ++D + +  G +VD++ IP +D  ++ LL
Sbjct: 521  PVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKEMTGEEVDITQIPLEDPASFKLL 580

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEK 670
                +  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+ + +V N  +RK+G+E 
Sbjct: 581  QRAESTAVFQLESRGMKDLINRLRPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA 640

Query: 671  IVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            I        H  +  +L+ T G+I+YQEQVMQIAQ ++GYSL  AD+LRRAMGKK  EEM
Sbjct: 641  ISYPDANYQHECLQVILEPTYGIILYQEQVMQIAQEMAGYSLGGADLLRRAMGKKKPEEM 700

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +KQ+  F  G+  N I   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP 
Sbjct: 701  EKQRSVFAEGSKNNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA 760

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKG 844
             F+AA M+ +MDN +KI     + ++  I I PP +N+    F V +N+ I Y + AIKG
Sbjct: 761  YFMAAVMSADMDNTDKIVTLADECQRMGITICPPDLNSGKYKFTVNENQEIVYGIGAIKG 820

Query: 845  VGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG      I++A  +   F  L DFC+++D KK+N+RVLE LV AGA+D  G  R  ++ 
Sbjct: 821  VGEGPIEAIIQARNEHGVFSDLFDFCAKIDIKKVNKRVLEKLVLAGAMDNLGPHRAAIMA 880

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            SL +  + A    K  +    ++F         +       V +  V  + E+  LG Y 
Sbjct: 881  SLQDALEAASQHAKAESFGQGDMFGLLTDADDAEQAFANVPVWSEKVWLDGEKETLGLYL 940

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            +GHP++ Y   L         +   T + N + +A +V+  +    +KG R   VT  + 
Sbjct: 941  TGHPINRYLSELTHYTDSRINDLKPTGKENQVAIAGLVLGVRVMTNKKGRRWAIVTLDDK 1000

Query: 1024 AKEYEANFFP 1033
            +   +   FP
Sbjct: 1001 SGRIDVRLFP 1010


>gi|21230815|ref|NP_636732.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769186|ref|YP_243948.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21112417|gb|AAM40656.1| DNA polymerase III alpha chain [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574518|gb|AAY49928.1| DNA polymerase III alpha chain [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 1196

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/1009 (40%), Positives = 604/1009 (59%), Gaps = 64/1009 (6%)

Query: 11  FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56
           FVHL VH+ +SL +  + +               N+L +      PA+A+TD NNLF+ +
Sbjct: 6   FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNNLFALV 65

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           +F + A   GI+PI G  + I             TP  T   + LL    EGY  L  L+
Sbjct: 66  KFYKAAEGVGIKPIAGADVMI------------ATPDVTPWRMTLLCRDREGYLSLSRLL 113

Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           +R ++     +  V I   WLQ  G   L  L G  S    R F    + +AE++L  ++
Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFAEGRADLAEQQLADWQ 171

Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           ++FGD L++ L R    G +R+ +   +  A    LP+VA+N+  FL   D+ AH+  + 
Sbjct: 172 RVFGDGLHLELTRTGREGEERFNQF-ALHAAGVRGLPVVASNDVRFLYASDFAAHEARVC 230

Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
           ++   V+    RPR   D  YLK+  EM ++F+D+P+A++NT+ +A+RC+  +++    L
Sbjct: 231 ISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADVPDAIDNTLALAQRCNIEMRLGTYFL 290

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           P +   E + +    ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I +M 
Sbjct: 291 PAYPVPEDETL----DSWIRSQSRDGLAARLEKNPIAPGKTRQDYVDRLEFELDTIIKMG 346

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R
Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 406

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
           +SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y  V
Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLV 466

Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLY 522
           D + KLIPN     ++L+    + +  +  +A P           V  L++++++LE L 
Sbjct: 467 DSVAKLIPN--ILGITLKDAMGEGK--DTEMASPELIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRD----VRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
           R+A  HA G+VI   PLS+  P++ +     R   PVTQF+   +E+ GL+KFDFLGL+T
Sbjct: 523 RNAGKHAGGVVIAPEPLSEFCPLFAEHDEGGRGKNPVTQFDKNDVEEVGLVKFDFLGLRT 582

Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632
           LT++  ++  +  R  +     VD++ IP DD  TY  +   G  G +FQ ESSGMR+ L
Sbjct: 583 LTIIDWAVKAINVRHARAGIDPVDITAIPLDDAPTYKGVFASGNTGAVFQFESSGMRRLL 642

Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           +  +PD  ED+IALVSLYRPGP+D I  +N RK+G++ I+   P  + +LK+T G+++YQ
Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQDIIYPDPRTEAILKDTYGIMVYQ 702

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAQKADEIFDL 762

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
            + ++PP VN     F+    + I Y L AIKGVG      I+E    + P+ +L DFC+
Sbjct: 823 GLTVLPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERLRNGPYTTLLDFCT 882

Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929
           RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883 RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
           +    + ++ L +            E+  LGFY SGHP D ++  +R++
Sbjct: 943 DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVREL 991


>gi|145630481|ref|ZP_01786261.1| DNA polymerase III subunit alpha [Haemophilus influenzae R3021]
 gi|144983871|gb|EDJ91313.1| DNA polymerase III subunit alpha [Haemophilus influenzae R3021]
          Length = 1159

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1057 (39%), Positives = 617/1057 (58%), Gaps = 56/1057 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +      K    G   F     + LL    EGY+ +  L+S+ Y   +
Sbjct: 61   SGMKPIIGADVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QR 108

Query: 125  GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            G   +  I   WL E   +G+I+L+GG+ G + +     ++   E  +  +++ F D  Y
Sbjct: 109  GYNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENAAEIESAVAFYQEFFADHFY 167

Query: 184  VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L R    +  R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +  
Sbjct: 168  LALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDD 227

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +  
Sbjct: 228  PKRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFL
Sbjct: 287  ----STEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 403  DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   ++ +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    
Sbjct: 463  IPPDPGMTLA-KAFETEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTL 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594
            ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R V    
Sbjct: 522  ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGK 581

Query: 595  -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPG
Sbjct: 582  PRVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641

Query: 654  PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+
Sbjct: 642  PLQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYT 701

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +++ IF+L+ KFA YGFNKSH+
Sbjct: 702  LGGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHS 761

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N    
Sbjct: 762  AAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884
             F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ES
Sbjct: 822  HFSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFES 881

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ +GA D  G  R  L ++L++  + +    K+      ++F     T  D        
Sbjct: 882  LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHED-------- 933

Query: 945  VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
            VEN+             + E+  LG Y S HP+  Y   L        ++     RG   
Sbjct: 934  VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +A +VV+ +   T+KG+R+G  T  + +   +   F
Sbjct: 994  TVAGLVVASRIAMTKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|254282070|ref|ZP_04957038.1| DNA polymerase III, alpha subunit subfamily, putative [gamma
            proteobacterium NOR51-B]
 gi|219678273|gb|EED34622.1| DNA polymerase III, alpha subunit subfamily, putative [gamma
            proteobacterium NOR51-B]
          Length = 1142

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/1016 (40%), Positives = 607/1016 (59%), Gaps = 42/1016 (4%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75
            +H+ YSL++G + +  ++  +AA + PA+AITD  N +  ++  + A +AGI+ I+G   
Sbjct: 1    MHTEYSLVDGLVKIKPLMSALAAAKMPAVAITDLTNFYGLIKAYKAAASAGIKLIVGADF 60

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
             +   D+    +          S+ LL     GYQ L  L++R +   Q      +  +W
Sbjct: 61   WVVDPDDPDRHH----------SLCLLAQDETGYQNLTTLITRAWRDGQHHGRASVQRAW 110

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--HRGYD 193
            L +   EGLI L+GG  G + +       + A + L+ +++ F DR Y+ LQR    G +
Sbjct: 111  LGD-HAEGLIALSGGRLGHVGQLLLLQHPEEARQALIDYQRDFPDRFYIELQRTGRPGEE 169

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDH 252
             Y  + V  LA   + P+VATN+  FL+  ++EAH+  + +     +    RPR  +   
Sbjct: 170  DYIHAAVA-LAAELDCPVVATNDVRFLTPSEFEAHEARVCIGEGRTLDDPRRPRDYSEKQ 228

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +L++  EM ++FSD+PEA+ENTVEIARRCS  +++  P LP F   E    +   E+ L 
Sbjct: 229  FLRSAEEMAALFSDIPEAIENTVEIARRCSVSIRLGEPFLPNFPVPE----EHSTESFLA 284

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            + A  GL VRL   A+     A  Y++RLDFEL +I  M F GYFL+V DFI+WAK+  I
Sbjct: 285  HLANEGLAVRLR--ALGNPDPAP-YQERLDFELKIINEMGFPGYFLVVMDFIRWAKQQGI 341

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
            PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP R+SMPDFD+DFC DRRDEVI 
Sbjct: 342  PVGPGRGSGAGSLVAYALEITDLDPLTYDLLFERFLNPQRVSMPDFDVDFCMDRRDEVID 401

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YV + YG E V+QIITFG++ AKA +RDV R    P+   D++ KLIP +    +  +A+
Sbjct: 402  YVADMYGREAVSQIITFGTMAAKAVVRDVARVQDKPFGLADKMSKLIPFEVGMTLE-KAL 460

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
              +   ++    D +   + +++ +LEG  R+   HA G+VI    L+   P+Y D    
Sbjct: 461  RQEDAIKDLLREDSAAQEIWDMAVQLEGATRNVGKHAGGVVIAPSRLTDFSPLYCDEEGG 520

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHE 607
              VTQ++   +E+AGL+KFDFLGL+TLT++  ++  + +R       K+D+S +P DD  
Sbjct: 521  GVVTQYDKNDVEEAGLVKFDFLGLRTLTIIDWAVRMIDERRAREGEAKLDISTLPLDDPA 580

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665
             + +L    T  +FQLES GM++ ++ ++PDC EDIIALV+L+RPGP+ + +V N  +RK
Sbjct: 581  VFKVLQQAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRK 640

Query: 666  NGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +G+E++        HP++ P+L+ T G+I+YQEQVMQIAQ L+GY+L  AD+LRRAMGKK
Sbjct: 641  HGREQVSYPDAQYQHPVLQPILEPTYGIILYQEQVMQIAQELAGYTLGGADLLRRAMGKK 700

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM KQ+  F  GAS+ GI   +A  IF+L+ KFA YGFNKSH+AAYA++SYQTAW+K
Sbjct: 701  KLEEMAKQRSVFAEGASRKGIDPDLATRIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLK 760

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSL 839
             HYP EF+AA M+ E+DN +K+     + +Q  I + PP  N     F V D   I Y L
Sbjct: 761  AHYPAEFMAAVMSSELDNTDKLITLRDECKQLGITVRPPDANEGEYAFSVNDRGEIIYGL 820

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             AIKG+G      I+ A    PF  L +FC R D +K+NRR +E+L+ +GALD  G  R 
Sbjct: 821  GAIKGLGEGPVESILAARNAGPFVDLFEFCDRTDPRKVNRRAIEALINSGALDGLGVERW 880

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFEN-EQ 956
             ++ ++++  + A+    N      ++F      G   D     + +   SS R  N E+
Sbjct: 881  IMMSAVEDALRAAEQAANNTAAGMGDLFGDVLAAGHRHDPYEHHRNARPWSSKRLLNGEK 940

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +G + SGHP++ Y+  +RK   +   +  A    N+  +A ++VS +  +T++G
Sbjct: 941  ESIGSFLSGHPMEEYEAEVRKFASRRIRDLQAD---NSATVAGLIVSVRTIRTQRG 993


>gi|188585188|ref|YP_001916733.1| DNA polymerase III catalytic subunit, DnaE type [Natranaerobius
            thermophilus JW/NM-WN-LF]
 gi|179349875|gb|ACB84145.1| DNA polymerase III catalytic subunit, DnaE type [Natranaerobius
            thermophilus JW/NM-WN-LF]
          Length = 1134

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/1037 (40%), Positives = 624/1037 (60%), Gaps = 40/1037 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  HS YSLL+G   +N ++ K    Q PA+A+TD   ++ A+EF ++A  AGI+PI
Sbjct: 5    FVHLHTHSQYSLLDGKCRINELVQKAKEYQMPALALTDHGVMYGAVEFYKQAKEAGIKPI 64

Query: 71   IGCQLDI-----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            +GC++ +      ++D +K  +Q          +VLL     GY+ L++LVS  +   +G
Sbjct: 65   LGCEVYVAPRGRTVKDPVKDKHQ--------YHLVLLAENQTGYKNLMKLVSLAF--KEG 114

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184
                      L E   +G+I L+   +G I         +VA+ R    K +FG +  Y+
Sbjct: 115  FYYKPRVDYELLERYHDGIIALSACLAGEIPTLILQGQYEVAKNRADRLKSIFGQNNFYL 174

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ H   +  +  + ++Q++   ++ LVATN+  +L+ ++   HDVL+ +     +  +
Sbjct: 175  ELQDHGLTEEQQVNTHLLQISRELDIGLVATNDIHYLTNQESSIHDVLLCIQTGKHLDDQ 234

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            DR +  + + Y K+  EM +IF D P A+ENT+ IA RC   L      LP F   E  D
Sbjct: 235  DRMKFPSNEFYFKDGDEMSNIFKDFPGAIENTLAIADRCQVELDFDTLHLPEFRVPEGYD 294

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                E + LR     GL  R  Q            ++RL++EL+VI++M ++ YFLIV D
Sbjct: 295  ----ENSYLRKLCQKGLLERYEQVTTK-------IQERLEYELDVISKMGYASYFLIVWD 343

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            F+++A +NNI VGPGRGS AGS+ AY+L IT++DP+R+ LLFERFLNP+R++MPD DIDF
Sbjct: 344  FVRFAHENNILVGPGRGSAAGSLVAYSLRITNVDPIRYGLLFERFLNPERVNMPDIDIDF 403

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + R+ VI+YV  KYG++ VA IITFG++QA+AA+RDVGR + M Y  VDR+ K+IP+D
Sbjct: 404  CYENRERVIQYVVEKYGNDNVAHIITFGTMQARAAVRDVGRVMGMNYGDVDRVAKMIPHD 463

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A+  +  F++    DP V  L+ IS+ +EGL RHAS HAAGIVI   PL++ 
Sbjct: 464  PGMTID-KALELNKDFKKLYDEDPQVRELINISKSIEGLPRHASIHAAGIVISKAPLTEY 522

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+      D  VTQF M  +E+ GL+K DFLGLKTLT++ ++++ + Q +   VDL+ I
Sbjct: 523  VPL--QCNDDQVVTQFPMGTLEELGLLKMDFLGLKTLTMMNRAVEIVNQTQAETVDLNKI 580

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD +T+ L+    TLG+FQLESSGMR  L  ++P   EDIIA  +LYRPGP++ I  +
Sbjct: 581  PLDDEQTFRLIREGNTLGVFQLESSGMRGVLRDLKPTSFEDIIATSALYRPGPMEQIPTF 640

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K+G+ +I   H  + P+L+ET G+I+YQEQ+MQ+A  ++G+SL EAD+LRRA+GKK 
Sbjct: 641  IESKHGQREISYPHEDLKPILEETYGIIVYQEQIMQVASTMAGFSLGEADLLRRAIGKKK 700

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  + +QKE+F+ G    G  K    ++++L+ KFADYGFNKSH+AAYA I+YQ+A++K 
Sbjct: 701  KNILAEQKEKFVQGCINRGYGKETGEHVYDLIVKFADYGFNKSHSAAYAYIAYQSAYLKA 760

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLA 840
            +YP +F+AA +T  M++ +K+  +  +AR+  I+I+PP VN   VDF  V D RI + LA
Sbjct: 761  NYPTQFMAALLTNSMNDTDKLALYIDNAREMGIEILPPDVNESLVDFTAVSDFRIRFGLA 820

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            A+K VG      I+     +  F SL+DFCSR D +  N++ +ESL+  GA D F ++R 
Sbjct: 821  AVKNVGRGAVEEIITRRRKEGGFTSLDDFCSRTDLRACNKKAIESLIKVGAFDAFEHNRK 880

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVR--FENEQ 956
            Q+LQ LD   K AQ            +F     GT  +KI L+   VE  ++    + E+
Sbjct: 881  QMLQVLDEAVKKAQAFTSGSVKGQVTMFEIVSDGT--NKIDLDYPDVEEFTLNELLQMEK 938

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             +LGF+ SGHPLD YK  L  +      E      G  I++A +    ++  T+KG ++ 
Sbjct: 939  ELLGFFVSGHPLDNYKEKLANIDTSSLAELNQIKEGFRIKVAGICQDVKEIITKKGEQMA 998

Query: 1017 WVTFSEPAKEYEANFFP 1033
            + T  + +   E   FP
Sbjct: 999  FCTLEDQSGTVELVIFP 1015


>gi|114776907|ref|ZP_01451950.1| hypothetical protein SPV1_11846 [Mariprofundus ferrooxydans PV-1]
 gi|114552993|gb|EAU55424.1| hypothetical protein SPV1_11846 [Mariprofundus ferrooxydans PV-1]
          Length = 1169

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1022 (41%), Positives = 618/1022 (60%), Gaps = 37/1022 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VHS +SLL   L + ++L K+A  +QPA+A+TD  NLF A+EF  KA   GI+PI
Sbjct: 6    FAHLHVHSDFSLLGSTLKIGDLLHKVAELRQPAVALTDYGNLFGAIEFYSKAMRMGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ I  +D+ K  ++G    P  P +VLL     G++ L++LVS  YL D      R
Sbjct: 66   MGCEVFI-CEDHTKRISEGPRG-PRFPQLVLLARNNHGWKNLLKLVSISYL-DGFYYKPR 122

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRH 189
            +    L E   +GLI ++ G +G I++       + A K  + ++ +F +   ++ +QR 
Sbjct: 123  VGKPLLSE-HADGLIAISSGWNGEIEQHLQRGDIEGARKVAIAYRDMFHEGCFFIEIQRQ 181

Query: 190  RGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             G  + + +++ ++LA+  ++PLVA+NN+ FL  ED+EA   + A+  +  ++       
Sbjct: 182  NGSGQEQINELLIELAHELDIPLVASNNAHFLEREDFEAFQAMQALQQNRTLNDDVSGHF 241

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            TP++YLK+  EM  +F D+PEALENTV IA RC+  LQ     LP        D Q  E+
Sbjct: 242  TPEYYLKSYEEMQELFEDIPEALENTVHIANRCNVDLQFGNYQLP--------DFQPPED 293

Query: 309  NEL----RNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             EL    R +++ GL+ R    AI  G      + Y  RL FEL+VI  M F GYFLIV+
Sbjct: 294  MELSAYMRQQSMEGLDDRWP--AILAGDPDAVRETYDARLAFELDVIENMGFPGYFLIVS 351

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK   IPVGPGRGSGAGS+ AY L ITD+DP+++ LLFERFLNP+R+SMPDFDID
Sbjct: 352  DFITWAKHQGIPVGPGRGSGAGSLVAYCLKITDLDPIKYGLLFERFLNPERVSMPDFDID 411

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC  RR+E IRYV +KYG ++VAQIITFGS++AKA +RDVGR L M  ++V+ + KL+PN
Sbjct: 412  FCMSRREEAIRYVTHKYGEDKVAQIITFGSMKAKAVIRDVGRVLPMELAKVNMIAKLVPN 471

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            D    +  +A+ D+ +  +    D  V RL  ++++LEG +R+A  HAAG++IG R L  
Sbjct: 472  DLKMTLE-KALVDEPKLAKMVKEDVEVARLFALAKRLEGSHRNAGKHAAGVIIGRRELVD 530

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----RGVKV 596
              P+++    +  V Q++M  +EK GLIKFDFLGLKTLT++  ++  + Q          
Sbjct: 531  TAPLFKVAGEEGKVVQWDMANVEKVGLIKFDFLGLKTLTVIDIAVKLVRQYESGDAAKHF 590

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP  D  T+ L+    T  +FQ+ESSGMR  L  ++PDC EDIIALV+LYRPGP++
Sbjct: 591  DITTIPMHDEATFQLMQRGQTGAVFQVESSGMRDLLTRLKPDCFEDIIALVALYRPGPLE 650

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +V  +   K+G++ I    P +  +L+ET GVI+YQEQVMQIAQLL+G+SL +AD+LR
Sbjct: 651  SGMVDTFIECKHGRQAIEYPLPQLKTILQETNGVILYQEQVMQIAQLLAGFSLGQADMLR 710

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM +Q++ F++GA K  +    A ++F+L+ KFA YGFNKSH+AAYA+ISY
Sbjct: 711  RAMGKKKAEEMAEQRKIFMAGAEKQKVDLDKAEHMFDLMEKFAGYGFNKSHSAAYALISY 770

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K HYP  F+AA+M+ +M N +K+     D R   I ++ P +N    +F+   + 
Sbjct: 771  QTAFLKAHYPRAFMAATMSCDMGNTDKLALLVTDCRNMGIDVLQPHINESDWEFRPEGDC 830

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L  IKGVG    R ++ E   +  F S ED   R  ++ LN+R+LE+++ AGAL  
Sbjct: 831  IRYGLGGIKGVGEAALRAVIDERKTNGEFTSFEDMIMRAPARTLNKRILEAMIRAGALQG 890

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVENSSVR 951
                +   L+ L  + +      K   +    +F   +   +D    TL  +S   S   
Sbjct: 891  LIPHQRAALEGLGEVLENLSRKRKEFASNQSFLFTVAEPESADGGFPTLPAWSPGES--- 947

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
             + E+ VLGFY +GHPL+ +      +G     E      G  I +   + S +Q +  +
Sbjct: 948  LQAEREVLGFYLTGHPLEAWLKRTTGLGDCNLSELKEREEGAEIVVPVGISSIRQYQGGR 1007

Query: 1012 GS 1013
            G+
Sbjct: 1008 GT 1009


>gi|325929585|ref|ZP_08190699.1| DNA polymerase III, alpha subunit [Xanthomonas perforans 91-118]
 gi|325540095|gb|EGD11723.1| DNA polymerase III, alpha subunit [Xanthomonas perforans 91-118]
          Length = 1196

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1009 (40%), Positives = 602/1009 (59%), Gaps = 64/1009 (6%)

Query: 11  FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56
           FVHL VH+ +SL +  + +               N+L +      PA+A+TD NNLF+ +
Sbjct: 6   FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNLFALV 65

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           +F + A   GI+PI G  + I             TP  T   + LL    EGY  L  L+
Sbjct: 66  KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113

Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           +R ++     +  V I   WLQ  G   L  L G  S    R F    + +AE++L  ++
Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFNEGRADLAEQQLADWQ 171

Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           ++FGD L++ L R    G +R+ +   +  A    LP+VA+N+  FL   D+ AH+  + 
Sbjct: 172 RVFGDGLHLELTRTGREGEERFNQF-ALHAAGVRGLPVVASNDVRFLYASDFNAHEARVC 230

Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
           ++   V+    RPR   D  Y+K+  EM ++F+D+P+A++NT  +A+RC+  +++    L
Sbjct: 231 ISSGRVLDDPKRPREYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFL 290

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           P +   E + +    ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I +M 
Sbjct: 291 PAYPVPEDETL----DSWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTIIKMG 346

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R
Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 406

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
           +SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y  V
Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSYGLV 466

Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLY 522
           D + KLIPN     ++L+    + +  ++ +A P           V  L++++++LE L 
Sbjct: 467 DSVAKLIPN--ILGITLKDAMGEGK--DSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
           R+A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+T
Sbjct: 523 RNAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582

Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632
           LT++  ++  +  R  +     VD++ IP DD  TY  +   G  G +FQ ESSGMR+ L
Sbjct: 583 LTIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642

Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQ
Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQ 702

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870
            + + PP VN     F+    + I Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 823 GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882

Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929
           RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883 RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
           +    + ++ L +            E+  LGFY SGHP D ++  +R++
Sbjct: 943 DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVREL 991


>gi|319775318|ref|YP_004137806.1| DNA polymerase III subunit alpha [Haemophilus influenzae F3047]
 gi|329122686|ref|ZP_08251264.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus aegyptius
            ATCC 11116]
 gi|317449909|emb|CBY86121.1| DNA polymerase III alpha subunit [Haemophilus influenzae F3047]
 gi|327472560|gb|EGF17990.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus aegyptius
            ATCC 11116]
          Length = 1159

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1057 (39%), Positives = 618/1057 (58%), Gaps = 56/1057 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYDEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +      K    G   F     + LL    EGY+ +  L+S+ Y   +
Sbjct: 61   SGMKPIIGADVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QR 108

Query: 125  GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            G   +  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y
Sbjct: 109  GYNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFY 167

Query: 184  VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L R    ++ R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +  
Sbjct: 168  LALSRTGRPNQERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDD 227

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +  
Sbjct: 228  PKRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L  K+  GLE RLA        +      Y +RL  EL+VI +M F GYFL
Sbjct: 287  ----STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 403  DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   ++ +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    
Sbjct: 463  IPPDPGMTLA-KAFEAEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTL 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594
            ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R V    
Sbjct: 522  ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGK 581

Query: 595  -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPG
Sbjct: 582  PRVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641

Query: 654  PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+
Sbjct: 642  PLQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYT 701

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +++ IF+L+ KFA YGFNKSH+
Sbjct: 702  LGGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHS 761

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N    
Sbjct: 762  AAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884
             F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ES
Sbjct: 822  HFSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFES 881

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ +GA D  G  R  L ++L++  + +    K+      ++F     T  D        
Sbjct: 882  LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHED-------- 933

Query: 945  VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
            VEN+             + E+  LG Y S HP+  Y   L        ++     RG   
Sbjct: 934  VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +A +VV+ +   T+KG+R+G  T  + +   +   F
Sbjct: 994  TVAGLVVASRIAMTKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|21672514|ref|NP_660581.1| DNA polymerase III alpha chain [Buchnera aphidicola str. Sg
            (Schizaphis graminum)]
 gi|25008381|sp|Q8K9S3|DPO3A_BUCAP RecName: Full=DNA polymerase III subunit alpha
 gi|21623135|gb|AAM67792.1| DNA polymerase III alpha chain [Buchnera aphidicola str. Sg
            (Schizaphis graminum)]
          Length = 1161

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1041 (39%), Positives = 632/1041 (60%), Gaps = 67/1041 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YS+++G     +++ K       A++ITD NNL+ A++F   A   G++PI
Sbjct: 6    FVHLHVHSDYSIVDGLSKPEDLIKKSVNLGMKALSITDFNNLYGAIKFYNAAHKWGLKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG---KQ 127
            IG  +    +    + N+       +  + LL +  +GY+ LI L+SR Y   +G   ++
Sbjct: 66   IGVTVKFFSE---LIKNE-------LTELTLLATNQDGYKNLILLISRAY--KKGYFCEK 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             V I   WL E+   GLI+L+GG  G I +      + +    L  ++K F    Y+ L 
Sbjct: 114  YVTIEKKWLSELNN-GLILLSGGCQGEIGKTLLRGQTSLISDCLHFYEKYFSGFYYLELI 172

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDR 245
            R +R  +    S  V L+Y+  +P+VATN+  FL++ED++ H + +A+     + + K +
Sbjct: 173  RTYRENEEKYLSLAVDLSYSQNIPVVATNDVCFLNKEDFKIHKIRIAINEGVRLKESKIQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               +   +LK   EM  +FSD+PEA+ N+VEI++RC+  ++     LP+F  ++      
Sbjct: 233  NNYSKHQFLKTEKEMCFLFSDIPEAIINSVEISKRCNVFIKSGQYFLPQFNTRKISI--- 289

Query: 306  EEENELRNKAVAGLEVRLAQG--AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              EN L  K+  GL+ RL      + K    + Y+ RLD EL +I +M F  YFLIV +F
Sbjct: 290  --ENYLIQKSNKGLKKRLESNFKKVDKEIFLK-YKNRLDTELGIINKMGFPSYFLIVMEF 346

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK NNIPVGPGRGSGAGS+ AY L IT++DPL F LLFERFLNP+R+S+PDFDIDFC
Sbjct: 347  IQWAKDNNIPVGPGRGSGAGSLVAYVLNITEVDPLFFDLLFERFLNPERISLPDFDIDFC 406

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG E VAQIITFG++ AKA +RDVGR L  PY  ++ L KL+P DP
Sbjct: 407  MEKRDRVIEHVVHTYGRESVAQIITFGTMTAKAVIRDVGRVLGYPYGFINNLSKLVPLDP 466

Query: 484  AHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               ++L+ A + +S       +D  +  L+++S+KLEG+ R+   HA G+VI    ++  
Sbjct: 467  G--ITLKDAFSKNSELYTLYKSDEDIQNLIDVSKKLEGVNRNVGKHAGGVVISPSKITDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KVD 597
             P+Y D + + PVTQF+   IE  GL+KFDFLGL+TLT++  +++ + +  +      ++
Sbjct: 525  CPVYCDEKGNNPVTQFDKNDIEYVGLLKFDFLGLRTLTIINCAVNMINKNLLLSNKKTIN 584

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP ++ + + LL    T GIFQLES GM+  ++ +QPDC EDIIAL++L+RPGP+ +
Sbjct: 585  INSIPLNESKCFLLLKKCETTGIFQLESYGMKDLVKRLQPDCFEDIIALIALFRPGPLQS 644

Query: 658  IVVYN--NRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N  NRK+G E+I        H L+ P+L+ T G+I+YQEQVMQIAQ+L+GY+L +A
Sbjct: 645  GMVDNFINRKHGYEEISYPDHKWQHILLKPVLESTYGIILYQEQVMQIAQILAGYTLGKA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAM KK  ++M +Q+  FI GA KNGI++ +A+ IF+LL KFA YGFNKSH+ AYA
Sbjct: 705  DILRRAMSKKNIKDMAEQRSIFIEGAQKNGINRKLAIKIFDLLEKFAGYGFNKSHSVAYA 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+K HYP EF+A++MT ++DN +KI     ++ Q  I+I+PP++N    +F V
Sbjct: 765  LVSYQTLWLKAHYPSEFMASAMTSDIDNTDKIVMLVNESIQMGIKIIPPNINLSKYEFYV 824

Query: 831  GDNR-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
               + I Y L A+KG+G     +++ E   +  F  L D C R D  K+ R+VLE L+ +
Sbjct: 825  DHTKNIVYGLGAVKGIGRNPILNLVQEREKNGLFSDLFDLCMRTDPNKITRKVLEKLIMS 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK------ 942
            G+ DCF  +R  LL  +++  K ++   K +  + E++F    G+F +++ + K      
Sbjct: 885  GSCDCFNKNRNYLLSLIEDAIKASKEHFKIKKFQQESLF----GSFKEELNILKKNNNLL 940

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--------GNN 994
             S  +   + ENE +VLG Y +GHP+D Y   L+      Y  + +T             
Sbjct: 941  NSFSDEEKKLENEHKVLGLYLTGHPIDRYAEELK------YYLNNSTFSKLKLFNHTKKK 994

Query: 995  IRLAAMVVSKQQKKTRKGSRI 1015
            I +A +VVS + K T+  +RI
Sbjct: 995  IMVAGIVVSIKTKVTKNKNRI 1015


>gi|190573488|ref|YP_001971333.1| DNA polymerase III subunit alpha [Stenotrophomonas maltophilia
           K279a]
 gi|190011410|emb|CAQ45028.1| putative DNA polymerase III, alpha chain [Stenotrophomonas
           maltophilia K279a]
          Length = 1196

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/1011 (41%), Positives = 607/1011 (60%), Gaps = 65/1011 (6%)

Query: 11  FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56
           FVHL VH+ +SL +  + +               N+L +      PA+A+TD NNLF+ +
Sbjct: 6   FVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRSVELGLPALAVTDLNNLFALV 65

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           +F + A   GI+PI G         ++ +  +G+ P+     + LL    EGY  L  L+
Sbjct: 66  KFYKAAEGVGIKPIAGA--------DVLIAEEGQDPW----RMTLLCRDREGYLSLSRLL 113

Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           +R ++     +  V I   WL+  G   L  L G  S    R       ++AE++L  ++
Sbjct: 114 TRAWMEGHRPEGGVAIHPDWLK-AGNANLFALAGRQS-LAGRLALDGKHELAEQQLADWQ 171

Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           ++FGD L++ L R    G + + +  ++  A    LP+VA+N+  FL+  D+ AH+  + 
Sbjct: 172 RVFGDGLHLELTRTGREGEETFNQFALMA-AGQRGLPVVASNDVRFLAPTDFSAHEARVC 230

Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
           ++   V+    RPR   D  YLK+  EM ++F+D+P+A++NT+ +A RC+  +++    L
Sbjct: 231 ISTGRVLDDPKRPREYSDQQYLKSAEEMCALFADIPDAIDNTLALAERCNIEMRLGTYFL 290

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           P +   + + +    +   R+    GLE RL +  +A G   +DY +RL+FELN I +M 
Sbjct: 291 PNYPVPDDETLDTWIQKMSRD----GLEERLEKNPLAPGKTREDYFERLEFELNTIIKMG 346

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R
Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERFLNPER 406

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
           +SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L  PY  V
Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGFPYGLV 466

Query: 473 DRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPS----------VDRLLEISQKLEGL 521
           D + KLIPN     + L+ A+        + +A P           V  L++++ +LE L
Sbjct: 467 DGVSKLIPN--ILGIHLKDALGKGKEGPSSEMASPELIQRYETEDDVRDLIDLALQLEDL 524

Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLK 577
            R+A  HA G+VIG  PLS+  P+Y +   +     PVTQF+   +E+ GL+KFDFLGL+
Sbjct: 525 TRNAGKHAGGVVIGPEPLSEFCPLYAEHDENGLGKNPVTQFDKNDVEEVGLVKFDFLGLR 584

Query: 578 TLTLLQKSLDFLAQR----GVK-VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQA 631
           TLT++  ++  + +R    G+  VD++ IP DD  TY  +   G  G +FQ ESSGMR+ 
Sbjct: 585 TLTIIDWAVKAINKRHERAGIPPVDIAAIPLDDTPTYKDIFANGNTGAVFQFESSGMRRL 644

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
           L+  +PD  ED+IALVSLYRPGP+D I  +N RK+G+E+I+   P  + +LK+T G+++Y
Sbjct: 645 LKDARPDRFEDLIALVSLYRPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGIMVY 704

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QEQVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K+G+ +  A  IF+
Sbjct: 705 QEQVMQMAQIVGGYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKDGVDEAKADAIFD 764

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
           L+ KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ ++DN +K+  F  + R 
Sbjct: 765 LMEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDLDNTDKVVGFLDEVRN 824

Query: 812 FNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFC 869
             + ++PP VN     F+ V  + I Y L AIKGVG      ++E      PF  L DFC
Sbjct: 825 LGLTVLPPKVNQSAFMFEAVTPDTIQYGLGAIKGVGQGACEAVVEERLKGGPFKDLLDFC 884

Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
           +RV S KLNRR LE+++  GALD  G +R  L+  L  + K    + + R +   ++F  
Sbjct: 885 TRVGSAKLNRRTLEAMINCGALDELGRNRASLMLQLPEVIKATDQMARERASGQNSLFGG 944

Query: 930 EKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKM 978
              + +  I L+    E   +  R   E+  LGFY SGHP D ++  +R +
Sbjct: 945 PDPS-ATTIQLDLPEAEEWPLLQRLNGERDTLGFYLSGHPFDPWRDDVRDL 994


>gi|289670237|ref|ZP_06491312.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 1195

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/1009 (40%), Positives = 604/1009 (59%), Gaps = 64/1009 (6%)

Query: 11  FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56
           FVHL VH+ +SL +  + +               N+L +      PA+A+TD NNLF+ +
Sbjct: 6   FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNLFALV 65

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           +F + A   GI+PI G  + I             TP  T   + LL    EGY  L  L+
Sbjct: 66  KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113

Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           +R ++     +  V I   WLQ  G   L  L G  S    R F    + +AE++L  ++
Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFGEGRADLAEQQLADWQ 171

Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           ++FGD L++ L R    G +R+ +   +  A    LP+VA+N+  FL   D+ AH+  + 
Sbjct: 172 RVFGDGLHLELTRTGRDGEERFNQF-ALNAAGVRGLPVVASNDVRFLYASDFNAHEARVC 230

Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
           ++   V+    RPR   D  Y+K+  EM ++F+D+P+A++NT  +A+RC+  +++    L
Sbjct: 231 ISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFL 290

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           P +   E + +    ++ +R+++  GL  RL +  +A G   QDY  RL+FEL+ I +M 
Sbjct: 291 PAYPVPEDETL----DSWIRSQSRDGLAARLEKSPLAPGKTRQDYVDRLEFELDTIIKMG 346

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           F GYFLIVADFIQW K  +IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R
Sbjct: 347 FPGYFLIVADFIQWGKNQSIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 406

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
           +SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y  V
Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLV 466

Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLY 522
           D + KLIPN     ++L+    + +  ++ +A P           V  L++++++LE L 
Sbjct: 467 DSVAKLIPN--ILGITLKDAMGEGK--DSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
           R+A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+T
Sbjct: 523 RNAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582

Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632
           LT++  ++  +  R  +     VD++ IP DD  TY  +   G+ G +FQ ESSGMR+ L
Sbjct: 583 LTIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFASGSTGAVFQFESSGMRRLL 642

Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQ
Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEAILKDTYGIMVYQ 702

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870
            + + PP VN     F+    + I Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 823 GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGLGACEAIVEERQRGGPYTTLLDFCT 882

Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929
           RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883 RVGTAKLNRRTLEAMINAGAMDGLGKNRASLILQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
           +    + ++ L +            E+  LGFY SGHP D ++  +R++
Sbjct: 943 DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVREL 991


>gi|325278077|ref|ZP_08143596.1| DNA polymerase III subunit alpha [Pseudomonas sp. TJI-51]
 gi|324096784|gb|EGB95111.1| DNA polymerase III subunit alpha [Pseudomonas sp. TJI-51]
          Length = 1174

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1066 (39%), Positives = 612/1066 (57%), Gaps = 62/1066 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL+VHS +SL++G + +  +   +A    PA+AITD +N+ S ++F + A  AGI
Sbjct: 2    SVPFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G  L +           G  P   +  I LL    +GY+ L EL+SR +   Q   
Sbjct: 62   KPICGADLWL----------AGADPEAPLSRICLLAMNPKGYRNLTELISRGWTDGQRNG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             V +   W+    +EGLI L+ G  G I  A        A+  L  +  +F +R YV +Q
Sbjct: 112  LVILQREWIAP-ASEGLIALSAGKEGDIGMALLAGRDDEAQALLQDWMGMFPERFYVEVQ 170

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R +R  D       V LA     PLVATN+  F+ + D++AH+  + +     +    RP
Sbjct: 171  RTNRARDEEYVHAAVALADRLGAPLVATNDVRFIKQSDFDAHETRVCIGEGWTLDDPRRP 230

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R   D  YLK+  EM  +FSDLP+A+ NTVEIA+RC+  +Q+    LP F       I  
Sbjct: 231  RCYSDQQYLKSSEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI-- 288

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIV 360
              ++ LR+ +  GLE RLA          Y    Q Y  RL FEL++I +M F GYFLIV
Sbjct: 289  --DDYLRHVSHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIV 346

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+
Sbjct: 347  MDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDV 406

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI YV   YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP
Sbjct: 407  DFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP 466

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +    +  +A   +   R+    D     + +++ KLEG+ R    HA G+VI    L+
Sbjct: 467  FEVGMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLT 525

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ + +   K     
Sbjct: 526  DFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            V++  IP DD +TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+
Sbjct: 586  VNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPL 645

Query: 656  DNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 646  QSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKF 825

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V D+ RI Y L AIKGVG      I+EA A   PF  L DFC R+D K++N+R L++LV
Sbjct: 826  TVNDDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALV 885

Query: 887  FAGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---- 927
             +GALD  G                +R  LL +L    K A+       + H ++F    
Sbjct: 886  RSGALDRLGPHFHDEIKAYHAHIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGGMF 945

Query: 928  -AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
             A +   +++   + + +++    R + E+  LG Y +GHP+D Y+  +R+   +   + 
Sbjct: 946  DAADVDVYANHRKVRELTLKE---RLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIIDL 1002

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +     I  A M+++ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1003 KPSRETQTI--AGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046


>gi|325916626|ref|ZP_08178889.1| DNA polymerase III, alpha subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537180|gb|EGD08913.1| DNA polymerase III, alpha subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 1195

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1009 (40%), Positives = 602/1009 (59%), Gaps = 64/1009 (6%)

Query: 11  FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56
           FVHL VH+ +SL +  + +               N+L +      PA+A+TD NNLF+ +
Sbjct: 6   FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNLFALV 65

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           +F + A   GI+PI G  + I             TP  T   + LL    EGY  L  L+
Sbjct: 66  KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113

Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           +R ++     +  V I   WLQ  G   L  L G  S    R F    + +AE++L  ++
Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFSEGRADLAEQQLADWQ 171

Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           ++FGD L++ L R    G +R+ +   +  A    LP+VA+N+  FL   D+ AH+  + 
Sbjct: 172 RVFGDGLHLELTRTGREGEERFNQF-ALHAAGVRGLPVVASNDVRFLYASDFNAHEARVC 230

Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
           ++   V+    RPR   D  YLK+  EM ++F+D+P+A++NT  +A+RC+  +++    L
Sbjct: 231 ISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTQALAQRCNIEMRLGTYFL 290

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           P +   E + +    ++ +R+++  GL  RL +  IA G   +DY  RL+FEL+ I +M 
Sbjct: 291 PAYPVPEDETL----DSWIRSQSREGLAARLEKSPIAPGKTRKDYVDRLEFELDTIIKMG 346

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R
Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 406

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
           +SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y  V
Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLV 466

Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLY 522
           D + KLIPN     ++L+    + +  ++ +A P           V  L++++++LE L 
Sbjct: 467 DSVAKLIPN--ILGITLKDAMGEGK--DSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
           R+A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+T
Sbjct: 523 RNAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582

Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632
           LT++  ++  +  R  +     VD++ IP DD  TY  +   G  G +FQ ESSGMR+ L
Sbjct: 583 LTIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642

Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQ
Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQ 702

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870
            + + PP VN     F+    + I Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 823 GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882

Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929
           RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883 RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
           +    + ++ L +            E+  LGFY SGHP D ++  +R++
Sbjct: 943 DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVREL 991


>gi|157964927|ref|YP_001499751.1| DNA polymerase III subunit alpha [Rickettsia massiliae MTU5]
 gi|157844703|gb|ABV85204.1| DNA polymerase III alpha chain [Rickettsia massiliae MTU5]
          Length = 1181

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1084 (39%), Positives = 632/1084 (58%), Gaps = 85/1084 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++  +A++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELASANKMPAICLADKGNLFGSLEFALYAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I            K        I+L+     GY+ L++L S  +  D  K  
Sbjct: 63   PIHGVILNI------------KYDIDIFAQILLIAKDETGYKNLLKLSSLTFTKDDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L E   EGLI L   + G + +     + + A       +++ GDR Y  + R
Sbjct: 111  DHIDFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +++ E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYPDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y ++  EM+ +FSDLP A++NTV +  RC F    + P+LP F  K+       E
Sbjct: 230  VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATKDIS-----E 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
             + +R  A  GL  RLA    ++    +       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIRKDAKEGLLARLATKFKSENISLENQEELKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PVSL QA+ +      A   +           +  +L+ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVLDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYAEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAA+Y 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-------- 822
            V+SYQTA++K +YP EFL A + LE++N +KI  F Q+A+   I+I  P++N        
Sbjct: 765  VLSYQTAYLKANYPAEFLVACLNLELNNHDKINFFLQEAKDNGIKITAPNINISEGYFSV 824

Query: 823  --------------TPCVDFKVGD--------------NRIYYSLAAIKGVGTTTARHIM 854
                           P +D  + +                I ++L AIKGV     + + 
Sbjct: 825  KFSDTVIPHSVRPVIPRLDRGIQEISKDTVVKPRYDIAGAIIFALGAIKGVTPNFGKLVT 884

Query: 855  -EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA- 912
             E  A   F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QLL S+  +  YA 
Sbjct: 885  DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYAT 944

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
             + E+  +N+   I   +  + S  I +     + +++ F  E   +G + S HPL  Y+
Sbjct: 945  SYHEEQESNQFSLI---KVSSLSPTILVSSDYADKNTLAF-YEFEAMGLFISNHPLTEYQ 1000

Query: 973  PILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVT--FSEPAKEYE 1028
             I  ++ I    +    +    N + LA ++   Q+K +R  +R  +VT   S+P   +E
Sbjct: 1001 EIFSRLNILNTADLHNNLPDGTNRVSLAGVI---QKKDSRMSARGRFVTLVLSDPENIFE 1057

Query: 1029 ANFF 1032
             + F
Sbjct: 1058 LSIF 1061


>gi|260583164|ref|ZP_05850944.1| DNA polymerase III subunit alpha [Haemophilus influenzae NT127]
 gi|260093782|gb|EEW77690.1| DNA polymerase III subunit alpha [Haemophilus influenzae NT127]
          Length = 1159

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1057 (39%), Positives = 616/1057 (58%), Gaps = 56/1057 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +      K    G   F     + LL    EGY+ +  L+S+ Y   +
Sbjct: 61   SGMKPIIGADVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QR 108

Query: 125  GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            G   +  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y
Sbjct: 109  GYNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFY 167

Query: 184  VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L R    +  R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +  
Sbjct: 168  LALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDD 227

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +  
Sbjct: 228  PKRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFL
Sbjct: 287  ----STEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 403  DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   ++ +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    
Sbjct: 463  IPPDPGMTLA-KAFEAEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTL 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594
            ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R V    
Sbjct: 522  ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGK 581

Query: 595  -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPG
Sbjct: 582  PRVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641

Query: 654  PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+
Sbjct: 642  PLQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQMLAGYT 701

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +++ IF+L+ KFA YGFNKSH+
Sbjct: 702  LGGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHS 761

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N    
Sbjct: 762  AAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884
             F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ES
Sbjct: 822  HFSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFES 881

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ +GA D  G  R  L ++L++  + +    K+      ++F     T  D        
Sbjct: 882  LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHED-------- 933

Query: 945  VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
            VEN+             + E+  LG Y S HP+  Y   L        ++     RG   
Sbjct: 934  VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +A +VV+ +   T+KG+R+G  T  + +   +   F
Sbjct: 994  TVAGLVVASRIAMTKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|114567554|ref|YP_754708.1| DNA polymerase III DnaE [Syntrophomonas wolfei subsp. wolfei str.
            Goettingen]
 gi|114338489|gb|ABI69337.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei str.
            Goettingen]
          Length = 1130

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1035 (39%), Positives = 632/1035 (61%), Gaps = 35/1035 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  HS YSLL+GA  + +++++    + PA+AITD   L+  ++F ++A   GI+P
Sbjct: 4    SFVHLHNHSEYSLLDGACRIKDLVNRAVELEMPAVAITDHGVLYGVIDFYREARKRGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC+L +  +  L    +       +  + LL     GY+ L++LVSR +L  +G    
Sbjct: 64   LIGCELYVAPRSRLDKEARIDD---NLYHLTLLCKNELGYRNLVQLVSRAFL--EGFYYK 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
                  L E   EGLI L+G   G I R       + A ++ L +++LFG    Y+ LQ 
Sbjct: 119  PRVDQELLEKYHEGLIALSGCVVGEIPRLLQNGDYRGAREKALYYQELFGSGNFYLELQD 178

Query: 189  HRGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H G    + S   +++L+    +PL A+N+  +L ++D + HDVL+ +   +VV+ + R 
Sbjct: 179  H-GLQEEKASLPGLLRLSREDSIPLAASNDCHYLRKKDAQVHDVLLCIQTGSVVNDEKRL 237

Query: 247  RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKECDD 302
            R +  + Y+K+R EM ++F D PEALENT++IA  C+      + H P+         + 
Sbjct: 238  RFSGSEFYMKSREEMAALFPDYPEALENTLKIAGECNLDFTFGEYHLPVFELPPGHSAES 297

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               E  +E   +     + ++ +              RL++EL VI  M F+ YFLIV D
Sbjct: 298  FLSEMVHEKFRRKYPDAQEKIIE--------------RLEYELRVINEMGFAAYFLIVQD 343

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             + W+++N IPVGPGRGS AGS+ +Y L IT IDPLR+ LLFERFLNP+R+SMPD DIDF
Sbjct: 344  LVNWSRQNGIPVGPGRGSAAGSLVSYVLDITTIDPLRYDLLFERFLNPERVSMPDIDIDF 403

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C ++RD VI Y+ +KYG +RVAQIITFG++ A+AA+RDVGRAL +PY QVDR+ K++P +
Sbjct: 404  CFEKRDRVIDYIISKYGADRVAQIITFGTMAARAAIRDVGRALDVPYGQVDRIAKMVPAE 463

Query: 483  PAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                VSL+ A+        A  +D +   +L+I+Q +EG+ RHAS HAAG+VIG + LS+
Sbjct: 464  LG--VSLERALEISPDLFTAYQSDYNTRNILDIAQAIEGMPRHASIHAAGVVIGRQSLSE 521

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            ++P+ +     + +TQF  + +E  GL+K D LGL+TLT++ ++L+ + + R   +D+S 
Sbjct: 522  ILPLQKTPEGHV-LTQFTKETVEDIGLLKMDILGLRTLTVIDRALEIIRKTRDEDIDISS 580

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD   Y LL+   T G+FQLES G+R+ L  M+PD  EDIIA+++LYRPGP+ + +V
Sbjct: 581  IPLDDEAVYKLLSAGDTAGVFQLESDGLRRLLCEMKPDRFEDIIAVIALYRPGPLGSGMV 640

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + NRKNG+++I  I PL++ +LKET GVI+YQEQVM++A  L+ +++ EADVLRRAMG
Sbjct: 641  EDFINRKNGRQEIEYIDPLLEDILKETYGVILYQEQVMRVASELADFTMGEADVLRRAMG 700

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EE+  Q+++FI+GA++NGI    A ++F+L+  FA YGFNKSH+AAYA+ISYQTA+
Sbjct: 701  KKKAEELMAQRDKFIAGAARNGIGLATASHLFDLMESFAGYGFNKSHSAAYALISYQTAY 760

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K HYPVE+L A ++  +DN +K+  + ++ R+  I+++PP +N    +F V  + I + 
Sbjct: 761  LKAHYPVEYLCAFLSSVIDNQDKVVSYIKECRRLGIKVLPPDINESYENFSVARDAIRFG 820

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L AIK VG    ++I+EA     + SL DFC RVD  +LN+R+LE+L+ AG  D  G+SR
Sbjct: 821  LGAIKNVGQNAVKNIVEARKQGFYTSLFDFCRRVDLGQLNKRMLENLILAGCFDSLGFSR 880

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
               L  ++     +  +++N  ++  ++F  E     + I   K   E S  R   E+ V
Sbjct: 881  KGALSIMEECVNISLAIKQNECSQQGSLFGDEMEMVEEPIIKLKGEYE-SRERLLKEKEV 939

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LGF+ S  PLD ++ +L  +     E+       + +R+A +VV+  ++ +RKG      
Sbjct: 940  LGFFVSESPLDEFRSLLPLISTHCLEDINLWEEESYVRVAGIVVNLSRRVSRKGESYARF 999

Query: 1019 TFSEPAKEYEANFFP 1033
               +     E   FP
Sbjct: 1000 VLEDLGGRIEVLVFP 1014


>gi|148827930|ref|YP_001292683.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittGG]
 gi|148719172|gb|ABR00300.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittGG]
          Length = 1159

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1057 (39%), Positives = 617/1057 (58%), Gaps = 56/1057 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +      K    G   F     + LL    EGY+ +  L+S+ Y   +
Sbjct: 61   SGMKPIIGADVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QR 108

Query: 125  GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            G   +  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y
Sbjct: 109  GYNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFY 167

Query: 184  VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L R    +  R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +  
Sbjct: 168  LALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDD 227

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +  
Sbjct: 228  PKRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L  K+  GLE RLA        +      Y +RL  EL+VI +M F GYFL
Sbjct: 287  ----STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 403  DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   ++ +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    
Sbjct: 463  IPPDPGMTLA-KAFETEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTL 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594
            ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R V    
Sbjct: 522  ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGK 581

Query: 595  -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPG
Sbjct: 582  PRVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641

Query: 654  PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+
Sbjct: 642  PLQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYT 701

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+
Sbjct: 702  LGGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N    
Sbjct: 762  AAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884
             F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ES
Sbjct: 822  HFSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFES 881

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ +GA D  G  R  L ++L++  + +    K+      ++F     T  D        
Sbjct: 882  LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHED-------- 933

Query: 945  VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
            VEN+             + E+  LG Y S HP+  Y   L        ++     RG   
Sbjct: 934  VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +A +VV+ +   T+KG+R+G  T  + +   +   F
Sbjct: 994  TVAGLVVASRIAMTKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|167585898|ref|ZP_02378286.1| DNA polymerase III, alpha subunit [Burkholderia ubonensis Bu]
          Length = 1104

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/1028 (40%), Positives = 616/1028 (59%), Gaps = 52/1028 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F ++A   GI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARGKGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC + I   D+    ++          ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGCDVWIANPDDRDKPSR----------LLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL     +GL+ L+G   G I  A    + + A +    + K+F    Y+ LQR
Sbjct: 114  AELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q   LA   +LP+VAT+ + F++++D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAATLAAELKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T D Y + + +M ++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFTTDQYFRTQDDMAALFADLPSAVANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RL Q       +      Y +RL+FE   I +M F GYFLIVAD
Sbjct: 291  --DDYLIQLSKEGLEKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +    K D SL
Sbjct: 529  FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSL 588

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDAASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM + +E F +GA+KNG+S+  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAEHREIFAAGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA 
Sbjct: 829  SRTIRYGLGAVKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH------ENIFAHEKGTFSDKITLEKFSV 945
            D    +R QLL S+    + A   E N           E+  AH          L     
Sbjct: 889  DSLNANRAQLLASVPLAMEAADQAEANAMQAGLFDMGAESPHAH---------ALVDEPA 939

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004
             +   R + E+  LGFY SGH  D Y+  +R+       + V  ++ G +  +A ++ S 
Sbjct: 940  WDDKRRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKVGELKEGRDKVVAGVIASL 995

Query: 1005 QQKKTRKG 1012
            + + T++G
Sbjct: 996  RTQMTQRG 1003


>gi|289662892|ref|ZP_06484473.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 1196

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1009 (40%), Positives = 602/1009 (59%), Gaps = 64/1009 (6%)

Query: 11  FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56
           FVHL VH+ +SL +  + +               N+L +      PA+A+TD NNLF+ +
Sbjct: 6   FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNLFALV 65

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           +F + A   GI+PI G  + I             TP  T   + LL    EGY  L  L+
Sbjct: 66  KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113

Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           +R ++     +  V I   WLQ  G   L  L G  S    R F    + +AE++L  ++
Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFSEGRADLAEQQLADWQ 171

Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           ++FGD L++ L R    G +R+ +   +  A    LP+ A+N+  FL   D+ AH+  + 
Sbjct: 172 RVFGDGLHLELTRTGRDGEERFNQF-ALNAAGVRGLPVAASNDVRFLYASDFNAHEARVC 230

Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
           ++   V+    RPR   D  Y+K+  EM ++F+D+P+A++NT  +A+RC+  +++    L
Sbjct: 231 ISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTYALAQRCNIEMRLGTYFL 290

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           P +   E + +    ++ +R+++  GL  RL +  +A G   QDY  RL+FEL+ I +M 
Sbjct: 291 PAYPVPEDETL----DSWIRSQSRDGLAARLEKSPLAPGKTRQDYVDRLEFELDTIIKMG 346

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R
Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 406

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
           +SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y  V
Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLV 466

Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLY 522
           D + KLIPN     ++L+    + +  ++ +A P           V  L++++++LE L 
Sbjct: 467 DSVAKLIPN--ILGITLKDAMGEGK--DSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
           R+A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+T
Sbjct: 523 RNAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582

Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632
           LT++  ++  +  R  +     VD++ IP DD  TY  +   G+ G +FQ ESSGMR+ L
Sbjct: 583 LTIIDWAVKAINVRHARAGIDPVDITTIPLDDMPTYKGVFASGSTGAVFQFESSGMRRLL 642

Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQ
Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEAILKDTYGIMVYQ 702

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870
            + + PP VN     F+    + I Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 823 GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882

Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929
           RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883 RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
           +    + ++ L +            E+  LGFY SGHP D ++  +R++
Sbjct: 943 DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVREL 991


>gi|145632094|ref|ZP_01787829.1| DNA polymerase III subunit alpha [Haemophilus influenzae 3655]
 gi|144987001|gb|EDJ93531.1| DNA polymerase III subunit alpha [Haemophilus influenzae 3655]
          Length = 1159

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1057 (39%), Positives = 616/1057 (58%), Gaps = 56/1057 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +      K T  G   F     + LL    EGY+ +  L+S+ Y   +
Sbjct: 61   SGMKPIIGADVKV------KSTLCGDEYF----YLTLLAKNNEGYKNITLLLSKAY--QR 108

Query: 125  GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            G   +  I   WL E   EG+I+L+GG+ G + +     +    E  +  +++ F D  Y
Sbjct: 109  GYNDLPYIDQDWLIE-HREGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFY 167

Query: 184  VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L R    +  R  Q  ++LA    LPLVATN+ +FL  +D+EAH++ +A+     +  
Sbjct: 168  LALSRTGRPNEERYIQAALKLAERCNLPLVATNDVMFLKSDDFEAHEIRVAIHDGYTLDD 227

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +  
Sbjct: 228  PKRPKYYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L  K+  GLE RLA        +      Y +RL  EL+VI +M F GYFL
Sbjct: 287  ----STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 403  DVDFCMDGRDRVIEHVTETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   +S +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    
Sbjct: 463  IPPDPGMTLS-KAFEAEPQLQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTL 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594
            ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R V    
Sbjct: 522  ITDFSPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGK 581

Query: 595  -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPG
Sbjct: 582  PRVDIAAIPLDDPESFELLKRAETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641

Query: 654  PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+
Sbjct: 642  PLQSGMVDNFIDRKHGREEVSYPDAKYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYT 701

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+
Sbjct: 702  LGGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N    
Sbjct: 762  AAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884
             F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ES
Sbjct: 822  HFSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFES 881

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ +GA D  G  R  L ++L++  + +    K+      ++F     T  D        
Sbjct: 882  LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHED-------- 933

Query: 945  VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
            VEN+             + E+  LG Y S HP+  Y   L        ++     RG   
Sbjct: 934  VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +A ++V+ +   T+KG+ +G  T  + +   +   F
Sbjct: 994  TVAGLLVASRIAITKKGNSLGIATLDDRSGRLDLTLF 1030


>gi|298531048|ref|ZP_07018449.1| DNA polymerase III, alpha subunit [Desulfonatronospira thiodismutans
            ASO3-1]
 gi|298509071|gb|EFI32976.1| DNA polymerase III, alpha subunit [Desulfonatronospira thiodismutans
            ASO3-1]
          Length = 1156

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1038 (40%), Positives = 631/1038 (60%), Gaps = 38/1038 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL  H+ YSLL+GA+ + ++  +      PA AITD  N+F +L F  +A   GI+PI
Sbjct: 4    FTHLHCHTEYSLLDGAIRITDLCARAVDLGMPAAAITDHGNMFGSLNFYLEAKKYGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC+  + +  N ++ +Q +        +VLL    EGY  L+++V+R +L D      R
Sbjct: 64   IGCE--VYLAQNHQVKDQLRY------HLVLLAMDKEGYHNLVKIVTRGWL-DGFYYKPR 114

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    L+    +G+I L+    G +         + A +  L +  +F  R Y+ ++ + 
Sbjct: 115  VDKDILK-AHNQGIICLSACLQGEVQHVLRRQGFKQARETALQYADIFPGRFYLEMEAN- 172

Query: 191  GYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            G     E   Q+++++   +LP+VATN+  +L  +D +AHD+L+ +  ++ V    R R 
Sbjct: 173  GIPEQMEVNDQLLEMSRETQLPVVATNDCHYLGPDDVQAHDILLCIQTNSKVQDSSRMRF 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  Y K+  EM   FS  P+ALEN  EI +RC+  ++      PR+     + +    
Sbjct: 233  DTDQLYYKSVEEMEKEFSHCPQALENVQEIIKRCNLEIETDTFHFPRYTPSRENTL---- 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + E  + +  GL+ R  +  +      + YR+RL+ EL +I  M F GYFLIV DFI WA
Sbjct: 289  DEEFISLSREGLQQRFQE--LPYSVDQKHYRERLEEELEIICSMGFPGYFLIVQDFINWA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K   IPVGPGRGS AGS+ AYAL IT++DP+R++LLFERFLN +R SMPD D+DFC D+R
Sbjct: 347  KSQGIPVGPGRGSAAGSLVAYALRITNLDPIRYNLLFERFLNKERASMPDIDVDFCYDQR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            ++VIRYV  KYG + VAQI TFG+++A+A +RDVGRAL M  S  D++ KLIP +    +
Sbjct: 407  EKVIRYVAEKYGRDSVAQITTFGTMKARAVVRDVGRALGMKLSLTDKIAKLIPEELKMTI 466

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   R+    D  V RL++I ++LEG+ RHASTHAAGIVI DR + + +P+YR
Sbjct: 467  D-KAMQQEPDLRKMVDEDEDVARLMDICRRLEGMVRHASTHAAGIVISDRAMQEHLPLYR 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606
              + D  VTQF+MK +EK GLIKFDFLGLKTLT+L+ +L   ++ G +  DL  +P +D 
Sbjct: 526  G-KKDEVVTQFDMKRVEKVGLIKFDFLGLKTLTVLKDTLAMASRNGQETPDLDSLPLEDP 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
            ET+ LL    T G+FQLESSGMR  L  ++P C EDIIAL++LYRPGP+++ +V +   R
Sbjct: 585  ETFKLLGRGLTDGVFQLESSGMRNVLVDLKPTCFEDIIALLALYRPGPLESGMVTDFIKR 644

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G   +   HP ++P+LKET GVI+YQEQVM+IAQ+L+GYSL + D+LRRAMGKK    
Sbjct: 645  KHGLVPVEYPHPELEPVLKETYGVILYQEQVMKIAQVLAGYSLGDGDILRRAMGKKEASV 704

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M +Q+ +F+ GA ++G+ +  A  IF+L+ KFA YGFNKSH+AAYA+ISYQTA++K H+P
Sbjct: 705  MARQRSKFLQGAKEHGVKQETAEYIFDLVEKFAGYGFNKSHSAAYALISYQTAYLKAHFP 764

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF+AA +T E++N +K+       R   I ++PP +N+   +F V +N++ + L+ IK 
Sbjct: 765  SEFMAALITSEVNNTDKVIAHVNACRDMEITVLPPCINSSLNEFSVENNQVRFGLSGIKN 824

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG +    I+ E   + PF++L DFC RV S+K  +RVLE L+ +GA+D  G SR  LL 
Sbjct: 825  VGRSAIEAIIRERKKNGPFENLLDFCERVGSRKAGKRVLEMLIKSGAMDTLGCSRRALLD 884

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFA-------HEKGTFSD--KITLEKFSVENSSVRFEN 954
             +D +   AQ   KN+     ++ +         KG   D  +  LE+F  E+  ++ E 
Sbjct: 885  GMDMVAARAQRSAKNKVKGQLSMLSLLGEETCQVKGLGLDCPENELEEFQ-EDEKLKLEK 943

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E   LGFY SGHPL  ++  ++++ +   +E +    G  + L  ++V K++  ++KG +
Sbjct: 944  E--ALGFYLSGHPLLPFRRDIQRLKLSTIQECLELRPGTQVELPVIIVGKKEHVSKKGDK 1001

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + +    +     E   F
Sbjct: 1002 MAFCQIEDLTGTAEVTIF 1019


>gi|21242159|ref|NP_641741.1| DNA polymerase III subunit alpha [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21107574|gb|AAM36277.1| DNA polymerase III alpha chain [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 1196

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1009 (40%), Positives = 601/1009 (59%), Gaps = 64/1009 (6%)

Query: 11  FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56
           FVHL VH+ +SL +  + +               N+L +      PA+A+TD NNLF+ +
Sbjct: 6   FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNLFALV 65

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           +F + A   GI+PI G  + I             TP  T   + LL    EGY  L  L+
Sbjct: 66  KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113

Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           +R ++     +  V I   WLQ  G   L  L G  S    R F    + +AE++L  ++
Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFNEGRADLAEQQLADWQ 171

Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           ++FGD L++ L R    G +R+ +   +  A    LP+VA+N+  FL   D+ AH+  + 
Sbjct: 172 RVFGDGLHLELTRTGRDGEERFNQF-ALHAAGVRGLPVVASNDVRFLYASDFNAHEARVC 230

Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
           ++   V+    RPR   D  Y+K+  EM ++F+D+P+A++NT  +A+RC+  +++    L
Sbjct: 231 ISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFL 290

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           P +   E + +    +  +R+++  GL  RL +  IA G   QDY  RL+FEL+ I +M 
Sbjct: 291 PAYPVPEDETL----DTWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTIIKMG 346

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R
Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 406

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
           +SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y  V
Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSYGLV 466

Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLY 522
           D + KLIPN     ++L+    + +  ++ +A P           V  L++++++LE L 
Sbjct: 467 DSVAKLIPN--ILGITLKDAMGEGK--DSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
           R+A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+T
Sbjct: 523 RNAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582

Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632
           LT++  ++  +  R  +     VD++ IP DD  TY  +   G  G +FQ ESSGMR+ L
Sbjct: 583 LTIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642

Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQ
Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQ 702

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870
            + + PP VN     F+    + I Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 823 GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882

Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929
           RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883 RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
           +    + ++ L +            E+  LGFY SGHP D ++  +R++
Sbjct: 943 DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVREL 991


>gi|78047019|ref|YP_363194.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035449|emb|CAJ23094.1| DNA polymerase III alpha chain [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 1196

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/1009 (40%), Positives = 602/1009 (59%), Gaps = 64/1009 (6%)

Query: 11  FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56
           FVHL VH+ +SL +  + +               N+L +      PA+A+TD NNLF+ +
Sbjct: 6   FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNLFALV 65

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           +F + A   GI+PI G  + I             TP  T   + LL    EGY  L  L+
Sbjct: 66  KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113

Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           +R ++     +  V I   WLQ  G   L  L G  S    R F    + +AE++L  ++
Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFNEGRADLAEQQLADWQ 171

Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           ++FGD L++ L R    G +R+ +   +  A    LP+VA+N+  FL   D+ AH+  + 
Sbjct: 172 RVFGDGLHLELTRTGREGEERFNQF-ALHAAGVRGLPVVASNDVRFLYASDFNAHEARVC 230

Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
           ++   V+    RPR   D  Y+K+  EM ++F+D+P+A++NT  +A+RC+  +++    L
Sbjct: 231 ISSGRVLDDPKRPREYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFL 290

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           P +   E + +    ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I +M 
Sbjct: 291 PAYPVPEDETL----DSWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTIIKMG 346

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R
Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 406

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
           +SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y  V
Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSYGLV 466

Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLY 522
           D + KLIPN     ++L+    + +  ++ +A P           V  L++++++LE L 
Sbjct: 467 DSVAKLIPN--ILGITLKDAMGEGK--DSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
           R+A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+T
Sbjct: 523 RNAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582

Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632
           LT++  ++  +  R  +     VD++ IP DD  TY  +   G  G +FQ ESSGMR+ L
Sbjct: 583 LTIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642

Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQ
Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQ 702

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870
            + + PP VN     F+    + I Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 823 GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882

Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929
           RV + +LNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883 RVGTARLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
           +    + ++ L +            E+  LGFY SGHP D ++  +R++
Sbjct: 943 DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVREL 991


>gi|311694160|gb|ADP97033.1| DNA polymerase III, alpha subunit [marine bacterium HP15]
          Length = 1145

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1037 (40%), Positives = 619/1037 (59%), Gaps = 47/1037 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G + +  ++ ++A    PA+ +T+ +N+ S + F + A  AG++PIIG  L ++  D
Sbjct: 1    MVDGLVRVKPLIKRVAELGMPAVGLTEQSNMCSLVRFYKAAMGAGVKPIIGADLWLENPD 60

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  + + PF     I LL    +GY  L E++S  Y   Q      I   WL E   
Sbjct: 61   ------EPENPF----RITLLARDNDGYLNLTEIISLGYTEGQRFGKPIIQRKWL-EARP 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
             GLI L+G   G + +A      ++A +R   +  L+ D  Y+ LQR  R  D       
Sbjct: 110  NGLIALSGSRMGDVGKALMAGKPELARERARYWMDLYPDSYYLELQRTGRPGDEDCLHLS 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH-YLKNRSE 259
            V+LA    LP+VATN+  FL  ED+EAH+  + +  S  +    R R   D  YL++  E
Sbjct: 170  VELAGALGLPVVATNDVHFLEAEDFEAHEARVCIGESRTLDDPRRDRRFSDQQYLRSADE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M+ +FSD+PEA+ENTVEIARRCS  +++    LP +   +   +    ++  R  +  GL
Sbjct: 230  MIELFSDIPEAIENTVEIARRCSVKVRMGEYFLPNYPIPDGMTM----DDYFRKVSEEGL 285

Query: 320  EVRLAQGAIAKG---YHA--QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
            E RLA+  ++K    Y A  + Y +RL+FEL++I +M F GYFLIV DFI+WAK N +PV
Sbjct: 286  EERLAK-TLSKDDPEYDAKREAYYKRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPV 344

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
            GPGRGSGAGS+ AYA  ITD+DPL + LLFERFLNP+R+SMPDFD+DFC + RD VI Y 
Sbjct: 345  GPGRGSGAGSLVAYAQLITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEGRDRVIEYT 404

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
              KYG E V+QIITFG++ AKA +RDV R     Y   D+L K+IP +P   +  +A+  
Sbjct: 405  AQKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPFEPGMTLE-KALEQ 463

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
            + +  E    D     + E++ KLEG+ R+A  HA G+VI    ++   P+Y D      
Sbjct: 464  EPQLVEFLENDEEAQEIWEMALKLEGVCRNAGKHAGGVVIAPTKITDFSPLYCDDEGGSL 523

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETY 609
            VTQF+   +E AGL+KFDFLGL+TLT+++ +L+ +  R  K     +D++ IP DD  ++
Sbjct: 524  VTQFDKGDVEDAGLVKFDFLGLRTLTIIKWALNMINPRREKKGMQPLDINEIPLDDVPSF 583

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNG 667
             +L    T  +FQLES GM+  +  +QPD +ED+IALV+L+RPGP+ + +V  + +RK+G
Sbjct: 584  DMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPGPLQSGMVDDFIDRKHG 643

Query: 668  KEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            ++ +   HP      + P+L+ T GVI+YQEQVMQIAQ+++GY+L  AD+LRRAMGKK  
Sbjct: 644  RQPMSFPHPDYQYEGLKPVLEPTYGVILYQEQVMQIAQVMAGYTLGNADMLRRAMGKKKP 703

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EEM KQK+ F+ G  +NGI+ T+A NIF+L+ KFA YGFNKSH+AAYA++SYQT W+K H
Sbjct: 704  EEMAKQKQFFLDGCEQNGINTTLAENIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 763

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAA 841
            YP EF+AA +T +M N +K+    ++ R   + ++ P V+     F V D  +I Y L A
Sbjct: 764  YPAEFMAAVLTADMQNTDKVVTLVEECRNMKLDLLVPDVSRSEYTFTVNDEGQIVYGLGA 823

Query: 842  IKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IKG+G    + I+E   D +PF  + DFC RVD KK+N+R +E+L+ +GA+D  G SR Q
Sbjct: 824  IKGLGEGPIQSIVEGRGDGEPFQDIFDFCRRVDLKKVNKRAMEALIRSGAMDKLGASRAQ 883

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKIT-LEKFSVENSSVRFENEQR 957
            L+ S+D   + A    +N +    ++F    E G   D    +          R + E+ 
Sbjct: 884  LMASIDKAVQQADQQSRNESVGMMDMFGEMLEAGDGGDPYEDVAGVREWPEKQRLKGEKD 943

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRI 1015
             LG Y +GHP D Y+  +R+        S+A ++ N    R+A +VV+++  KTR GS +
Sbjct: 944  TLGLYLTGHPFDEYEKEVRRF----VRSSIADLKPNKSPQRVAGLVVAQRTMKTRTGSTM 999

Query: 1016 GWVTFSEPAKEYEANFF 1032
             ++T  + +   EA  F
Sbjct: 1000 CFITLDDRSARIEATLF 1016


>gi|319897758|ref|YP_004135955.1| DNA polymerase iii alpha subunit [Haemophilus influenzae F3031]
 gi|317433264|emb|CBY81639.1| DNA polymerase III alpha subunit [Haemophilus influenzae F3031]
          Length = 1159

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/1057 (39%), Positives = 617/1057 (58%), Gaps = 56/1057 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYDEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +      K    G   F     + LL    EGY+ +  L+S+ Y   +
Sbjct: 61   SGMKPIIGADVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QR 108

Query: 125  GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            G   +  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y
Sbjct: 109  GYNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFY 167

Query: 184  VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L R    +  R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +  
Sbjct: 168  LALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDD 227

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +  
Sbjct: 228  PKRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L  K+  GLE RLA        +      Y +RL  EL+VI +M F GYFL
Sbjct: 287  ----STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 403  DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   ++ +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    
Sbjct: 463  IPPDPGMTLA-KAFEAEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTL 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594
            ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R V    
Sbjct: 522  ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGK 581

Query: 595  -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPG
Sbjct: 582  PRVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641

Query: 654  PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+
Sbjct: 642  PLQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYT 701

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+
Sbjct: 702  LGGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N    
Sbjct: 762  AAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884
             F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ES
Sbjct: 822  HFSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFES 881

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ +GA D  G  R  L ++L++  + +    K+      ++F     T  D        
Sbjct: 882  LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHED-------- 933

Query: 945  VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
            VEN+             + E+  LG Y S HP+  Y   L        ++     RG   
Sbjct: 934  VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +A ++V+ +   T+KG+R+G  T  + +   +   F
Sbjct: 994  TVAGLLVASRIAITKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|16272681|ref|NP_438899.1| DNA polymerase III subunit alpha [Haemophilus influenzae Rd KW20]
 gi|260579831|ref|ZP_05847661.1| DNA-directed DNA polymerase subunit III alpha [Haemophilus influenzae
            RdAW]
 gi|1169392|sp|P43743|DPO3A_HAEIN RecName: Full=DNA polymerase III subunit alpha
 gi|1573746|gb|AAC22399.1| DNA polymerase III, alpha subunit (dnaE) [Haemophilus influenzae Rd
            KW20]
 gi|260093115|gb|EEW77048.1| DNA-directed DNA polymerase subunit III alpha [Haemophilus influenzae
            RdAW]
          Length = 1159

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/1057 (39%), Positives = 616/1057 (58%), Gaps = 56/1057 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFIHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +      K    G   F     + LL    EGY+ +  L+S+ Y   +
Sbjct: 61   SGMKPIIGADVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QR 108

Query: 125  GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            G   +  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y
Sbjct: 109  GYNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFY 167

Query: 184  VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L R    +  R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +  
Sbjct: 168  LALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNTEDFEAHEIRVAIHDGYTLDD 227

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +  
Sbjct: 228  PKRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFL
Sbjct: 287  ----STEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 403  DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   ++ +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    
Sbjct: 463  IPPDPGMTLA-KAFETEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTL 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594
            ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R V    
Sbjct: 522  ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGK 581

Query: 595  -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPG
Sbjct: 582  PRVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641

Query: 654  PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+
Sbjct: 642  PLQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYT 701

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +++ IF+L+ KFA YGFNKSH+
Sbjct: 702  LGGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHS 761

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N    
Sbjct: 762  AAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884
             F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ES
Sbjct: 822  HFSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFES 881

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ +GA D  G  R  L ++L++  + +    K+      ++F     T  D        
Sbjct: 882  LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHED-------- 933

Query: 945  VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
            VEN+             + E+  LG Y S HP+  Y   L        ++     RG   
Sbjct: 934  VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +A +VV+ +   T+KG+R+G  T  + +   +   F
Sbjct: 994  TVAGLVVASRIAMTKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|312883823|ref|ZP_07743542.1| DNA polymerase III subunit alpha [Vibrio caribbenthicus ATCC
            BAA-2122]
 gi|309368572|gb|EFP96105.1| DNA polymerase III subunit alpha [Vibrio caribbenthicus ATCC
            BAA-2122]
          Length = 1143

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1033 (40%), Positives = 611/1033 (59%), Gaps = 41/1033 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G   +  ++ K+A    PA+A+TD  NL   ++F   A ++G++PIIG   D  MQ 
Sbjct: 1    MVDGLSKVPALVKKVAEMGMPAVALTDFTNLCGLVKFYGSAHSSGVKPIIGA--DFLMQS 58

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                   G+     +  I +L +   GY+ L  L+S+ YL    +    I   WL E+ +
Sbjct: 59   E----EFGEE----LTRITVLAADNLGYKNLTLLISKAYLRGHIQHHPVIDKKWLAEL-S 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            +GLI+L+GG SG I +A    +  VA + +  +K+ F DR Y+ L R  R  +       
Sbjct: 110  QGLIVLSGGRSGEIGKALLKGNQHVASQCVDFYKEYFPDRFYLELTRTGRADEEAYLHFA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            ++LA   +LP+VATN  + L +  +EAH++ +A+     +    RP+  +   YL++  E
Sbjct: 170  LELAEITQLPVVATNEVVILDDSFFEAHEIRVAIHDGYTLEDPRRPKNYSSQQYLRSEQE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEALEN+VEIA+RC+  +++    LP F     D +  EE   L  K+  GL
Sbjct: 230  MCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPAF---PTDGM--EETEFLIKKSQQGL 284

Query: 320  EVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL          AQ   +Y +RL  EL VI  M F GYFLIV +FIQW+K N IPVGP
Sbjct: 285  EERLEFLFPDPNTRAQRRPEYDERLQVELEVINNMGFPGYFLIVMEFIQWSKDNAIPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L   +  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHGFGFVDRISKLVPPDPGMTLE-KAFQAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
               E    D  +  L+++ + LEG  R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  ALPELYNNDEEIKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L  +  R      + V +  IP  D  +++L
Sbjct: 524  QFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKLPVVIESIPLQDQASFNL 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQNAETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             I        H  +   L  T G+I+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  AISYPDETWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNG++  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP
Sbjct: 704  MAKQRGTFKEGAEKNGVNGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V +   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECIRMKLKVLPPDINSGVYRFNVDETGAIVYGIGAIK 823

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+ A      F  L DFC+R+D KK+N+RV+E L++AGALD  G  R  ++
Sbjct: 824  GVGEGPIEAILTAREKGGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAAMM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
             SL++  K A    +  +    ++F            K T  + +     V  E E+  L
Sbjct: 884  ASLNDAVKAASQHHQAESFGQTDLFGVLTQAPDEIEKKYT--QVAPWPEKVWLEGERDTL 941

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G Y +GHP++ Y   L K      +++  T R  ++ ++ +V++ +   T++GSRIG +T
Sbjct: 942  GLYLTGHPINAYLRELTKYTSCRLKDATPTRRDQSVTVSGLVIAARVMTTKRGSRIGIMT 1001

Query: 1020 FSEPAKEYEANFF 1032
              + +   E   F
Sbjct: 1002 LDDRSGRMEVMLF 1014


>gi|114330405|ref|YP_746627.1| DNA polymerase III, alpha subunit [Nitrosomonas eutropha C91]
 gi|114307419|gb|ABI58662.1| DNA polymerase III, alpha subunit [Nitrosomonas eutropha C91]
          Length = 1166

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/994 (41%), Positives = 596/994 (59%), Gaps = 56/994 (5%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +P FVHL++HS YS+++G + +   + K      PA+A+TD +NLF  ++F Q AC AGI
Sbjct: 4   NPVFVHLRLHSEYSVVDGIVRIEEAVAKARDTGMPALALTDLSNLFGLVKFYQHACKAGI 63

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           +PI GC + I  +      N    PF     ++LL  +  GY  L  L+SR Y  +  + 
Sbjct: 64  KPIAGCDVWISNE------NDADRPF----RLLLLCQSFSGYLLLSRLLSRAYRENMQRG 113

Query: 128 SVRICLSWLQE-IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              +   W +E  GTEGLI L+GG  G ++R         A      +  LF +R Y+ +
Sbjct: 114 RAELKKDWFREGAGTEGLIALSGGEQGEVER-LLLADPDAATTAAQEWAALFPERFYLEI 172

Query: 187 QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           QR  R  +      +++L    +LP+VAT+   F+  ED+ AH+  + +A   V+  + R
Sbjct: 173 QRCGRPDEEVTNHAMLELVSGLKLPVVATHPVQFMQPEDFRAHEARVCIAQGYVLGDRRR 232

Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
           PR  T   Y K  +EM  +F D+PEAL N+VEIARRCS +L++    LP F       + 
Sbjct: 233 PREFTEQQYFKTAAEMSELFGDVPEALANSVEIARRCSLMLELGVNRLPDFPTPAGISV- 291

Query: 305 KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              E  LR++A AGL VR+ Q    A  +      Y+ RLDFE+  I +M F+GYFLIV+
Sbjct: 292 ---EQYLRDRAQAGLVVRMTQLFPEAAQRDEKYPAYQARLDFEVETIIQMGFAGYFLIVS 348

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFI WAK++++PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFDID
Sbjct: 349 DFISWAKQHDVPVGPGRGSGAGSLVAYSLDITDLDPLRYDLLFERFLNPERVSMPDFDID 408

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FCQDRR++VI YV+++YG E VAQI TFG++ AKA +RDVGR L +PY+ VD+L KL+P 
Sbjct: 409 FCQDRREQVIEYVRDRYGAESVAQIATFGTMAAKAVVRDVGRVLDLPYNFVDQLAKLVPF 468

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
           +    +  +A   +    +   A+  V  LLE++++LEGL R+   HA G++I    ++ 
Sbjct: 469 ELGMTLH-KAREIEPLLNQRAEAEEDVRNLLELAERLEGLTRNVGMHAGGVLIAPGKITD 527

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV------- 594
             P+Y     D  V+Q++   +EK GL+KFDFLGL+TLT+L +++  + Q  +       
Sbjct: 528 FCPVYCADSGDAVVSQYDKDDVEKIGLVKFDFLGLRTLTILDRAVADIRQYQLASLGGKD 587

Query: 595 ---------KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
                    +  L  I  +D  T+ L+    T+GIFQ ES GM+  L+  +PD  ED+IA
Sbjct: 588 AGEQSVEENRFSLGDISLEDAATFALMAKGNTVGIFQFESRGMKDLLQKAKPDRFEDLIA 647

Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
           LV+LYRPGP+D I  +  RK+GK ++  + P + P+L  T G++IYQEQVMQIAQ++ GY
Sbjct: 648 LVALYRPGPMDLIPDFIERKHGK-RVEYLDPRLQPILGPTYGIMIYQEQVMQIAQVIGGY 706

Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
           SL  AD+LRRAMGKK  EEM +Q+  F+ GA +NG+ +  AV +F L+ KFA YGFNKSH
Sbjct: 707 SLGGADLLRRAMGKKKVEEMAQQRAVFVEGAIRNGMMEADAVTLFSLMEKFAGYGFNKSH 766

Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
           AAAYA+I+YQTA++K HYP EF+AA M+ +MD+ +K+  F +D +   I I+PP +N   
Sbjct: 767 AAAYALIAYQTAYLKAHYPAEFMAACMSSDMDDTDKVNVFYEDCKLNGIAILPPDINQSA 826

Query: 826 VDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLE 883
             F   D + I Y L AIKG G      I+ A      F  L DFC RVD + +NRR +E
Sbjct: 827 YYFVPVDRKTIRYGLGAIKGTGEAAISAIVRAREQGIAFTGLFDFCQRVDRRIVNRRTIE 886

Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
           +L+ AGA D    +R  L+ S+    +YA+         H ++ A +   F D   L + 
Sbjct: 887 ALIRAGAFDTVEANRAALMASVGMALEYAE---------HCSLTASQVSLFDDNADLLQQ 937

Query: 944 SVENSSVRFENEQRV------LGFYFSGHPLDVY 971
            V     ++  ++++      LGFY SGHP D Y
Sbjct: 938 PVITEIAQWPEKEKLQYEKMSLGFYLSGHPYDSY 971


>gi|115352403|ref|YP_774242.1| DNA polymerase III subunit alpha [Burkholderia ambifaria AMMD]
 gi|115282391|gb|ABI87908.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria AMMD]
          Length = 1177

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1032 (40%), Positives = 620/1032 (60%), Gaps = 60/1032 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F Q+A   GI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNPDDRDKPS--RLLLLVKDKVGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL    ++GL+ L+G   G I  AF  ++ + A +    + K+F    Y+ LQR
Sbjct: 114  AELDASWLDGELSQGLLALSGAQQGDIGLAFAADNEEAARRHAERWAKVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q   LA +  LP+VAT+ + F++++D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T D Y + + EMV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFTTDQYFRTQDEMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RL Q       +      Y +RL+FE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSKEGLEKRLEQLYPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +    K D SL
Sbjct: 529  FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKADWSL 588

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGD----- 832
            +K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+ VG+     
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCIVNNLVVLPPDINQSHYRFEPVGEADGKR 828

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA 
Sbjct: 829  SRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRVVNRRTVEALIRAGAF 888

Query: 892  DCFGYSRMQLLQSL----------DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            D    +R Q+L S+                A   +    + H +    E   + DK    
Sbjct: 889  DSLNANRAQMLASVPLAMEAAEQAAANAMQAGLFDMGAESPHAHALVDEP-AWDDK---- 943

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAM 1000
                     R + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A +
Sbjct: 944  --------RRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKIGDLKEGRDKLVAGI 991

Query: 1001 VVSKQQKKTRKG 1012
            + S + + T++G
Sbjct: 992  IASLRTQMTQRG 1003


>gi|312796952|ref|YP_004029874.1| DNA polymerase III alpha subunit [Burkholderia rhizoxinica HKI 454]
 gi|312168727|emb|CBW75730.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia
            rhizoxinica HKI 454]
          Length = 1198

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1022 (40%), Positives = 616/1022 (60%), Gaps = 39/1022 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++ +++ A D Q A+A+TD  N F  + F + A A G++
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDAVERAAEDGQGALALTDLANAFGLVRFYKAARAHGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G  + +   D+     +          ++LLV    GY  L EL+SR +L +Q +  
Sbjct: 64   PIVGADVWVSNPDDRDKPAR----------LLLLVKDRRGYLNLCELLSRAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   WL+    EGL+ L+G   G I  A    + Q A +    +  +F +  Y+ LQR
Sbjct: 114  AEVDCQWLETGLAEGLLALSGAQHGDIGIALAAGNVQAATRHAQRWAAIFPNAFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R  G + Y + Q V+LA   +LP+VAT+   F++ ED+ AH+  + ++   +++   R 
Sbjct: 174  MRQPGVEAYVQ-QAVELAAQLKLPVVATHPVQFMTPEDFTAHEARVCISEGDILANPRRA 232

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R + D Y   + +M  +F+D+P AL NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFSTDQYFFTQQQMGELFADIPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RL Q    A  +    Q Y++RL FE + I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSKTGLEQRLEQLFPDATQRNARRQTYQERLAFECDTIIKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ A+AL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAFALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQD RD VI+YV++KYG + V+QI TFG++ AKAA+RD+GR L + Y+  D + KLIP  
Sbjct: 409  CQDGRDRVIQYVKSKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYNFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++ + +E    +  V +LLE++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPQLQERFDNEDEVRQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +    K D SL
Sbjct: 529  FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSL 588

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPGP+D I
Sbjct: 589  AQVPLDDPASFTILKNANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREMVEYPDPRVEPILKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+S   A  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHRELFREGAAKNGLSAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGD----- 832
            +K H+P EF+AA+M+L MD+ +K+K   +D    ++ ++PP +N     F+ V D     
Sbjct: 769  LKVHHPAEFMAANMSLAMDDTDKVKILFEDCIANHLAVLPPDINQSAYRFEPVADAPGKR 828

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A   +PF  L DFC RVD + +NRR +E+L+ AGA 
Sbjct: 829  SKTIRYGLGAIKGSGQNAIEEILRARESQPFSDLFDFCERVDRRIVNRRTIEALIRAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+    N       +F    G+   +  L          +
Sbjct: 889  DSLHENRAQLLASVPLAMEAAEQASANALQG--GLFDMPDGSSGHQHELVDEPAWTEKRK 946

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D YK  +R+       + +  ++ G +  +A ++ + + + T+
Sbjct: 947  LQEEKAALGFYISGHLFDAYKDEVRRF----VRQKIGELKEGRDKVIAGVITAMRTQMTQ 1002

Query: 1011 KG 1012
            +G
Sbjct: 1003 RG 1004


>gi|294666388|ref|ZP_06731634.1| DNA polymerase III subunit alpha [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603830|gb|EFF47235.1| DNA polymerase III subunit alpha [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1196

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1009 (40%), Positives = 601/1009 (59%), Gaps = 64/1009 (6%)

Query: 11  FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56
           FVHL VH+ +SL +  + +               N+L +      PA+A+TD NNLF+ +
Sbjct: 6   FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNLFALV 65

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           +F + A   GI+PI G  + I             TP  T   + LL    EGY  L  L+
Sbjct: 66  KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113

Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           +R ++     +  V I   WLQ  G   L  L G  S    R F    + +AE++L  ++
Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFNEGRADLAEQQLADWQ 171

Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           ++FGD L++ L R    G +R+ +   +  A    LP+VA+N+  FL   D+ AH+  + 
Sbjct: 172 RVFGDGLHLELTRTGRDGEERFNQF-ALHAAGVRGLPVVASNDVRFLYASDFNAHEARVC 230

Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
           ++   V+    RPR   D  Y+K+  EM ++F+D+P+A++NT  +A+RC+  +++    L
Sbjct: 231 ISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFL 290

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           P +   E + +    ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I +M 
Sbjct: 291 PAYPVPEDETL----DSWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTIIKMG 346

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R
Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 406

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
           +SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y  V
Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSYGLV 466

Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLY 522
           D + KLIPN     ++L+    + +  ++ +A P           V  L++++++LE L 
Sbjct: 467 DSVAKLIPN--ILGITLKDAMGEGK--DSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
           R+A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+T
Sbjct: 523 RNAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582

Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632
           LT++  ++  +  R  +     VD++ IP DD  TY  +   G  G +FQ ESSGMR+ L
Sbjct: 583 LTIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642

Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQ
Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQ 702

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870
            + + PP VN     F     + I Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 823 GLTVKPPRVNESAYMFAAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882

Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929
           RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883 RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
           +    + ++ L +            E+  LGFY SGHP D ++  +R++
Sbjct: 943 DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVREL 991


>gi|294625959|ref|ZP_06704571.1| DNA polymerase III subunit alpha [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599754|gb|EFF43879.1| DNA polymerase III subunit alpha [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1196

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1009 (40%), Positives = 601/1009 (59%), Gaps = 64/1009 (6%)

Query: 11  FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56
           FVHL VH+ +SL +  + +               N+L +      PA+A+TD NNLF+ +
Sbjct: 6   FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNLFALV 65

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           +F + A   GI+PI G  + I             TP  T   + LL    EGY  L  L+
Sbjct: 66  KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113

Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           +R ++     +  V I   WLQ  G   L  L G  S    R F    + +AE++L  ++
Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFNEGRADLAEQQLADWQ 171

Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           ++FGD L++ L R    G +R+ +   +  A    LP+VA+N+  FL   D+ AH+  + 
Sbjct: 172 RVFGDGLHLELTRTGRDGEERFNQF-ALHAAGVRGLPVVASNDVRFLYASDFNAHEARVC 230

Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
           ++   V+    RPR   D  Y+K+  EM ++F+D+P+A++NT  +A+RC+  +++    L
Sbjct: 231 ISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFL 290

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           P +   E + +    ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I +M 
Sbjct: 291 PAYPVPEDETL----DSWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTIIKMG 346

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R
Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 406

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
           +SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y  V
Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSYGLV 466

Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLY 522
           D + KLIPN     ++L+    + +  ++ +A P           V  L++++++LE L 
Sbjct: 467 DSVAKLIPN--ILGITLKDAMGEGK--DSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
           R+A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+T
Sbjct: 523 RNAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582

Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632
           LT++  ++  +  R  +     VD++ IP DD  TY  +   G  G +FQ ESSGMR+ L
Sbjct: 583 LTIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642

Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQ
Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQ 702

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870
            + + PP VN     F     + I Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 823 GLTVKPPRVNESAYMFAAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882

Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929
           RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883 RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
           +    + ++ L +            E+  LGFY SGHP D ++  +R++
Sbjct: 943 DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVREL 991


>gi|89900825|ref|YP_523296.1| DNA polymerase III subunit alpha [Rhodoferax ferrireducens T118]
 gi|89345562|gb|ABD69765.1| DNA polymerase III, alpha subunit [Rhodoferax ferrireducens T118]
          Length = 1185

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/997 (41%), Positives = 590/997 (59%), Gaps = 52/997 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL++H+ +S+++G   + + +   AAD QPA+AITD +NLF A++F + A   G++P+
Sbjct: 2   FIHLRLHTEFSVVDGTNRIGDSVKAAAADGQPALAITDLSNLFGAIKFYKAARKCGVKPL 61

Query: 71  IGCQLDIDM--QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IG ++ ++   QD   ++            ++LLV   +GY  L EL++R +     K  
Sbjct: 62  IGAEIWLEGLGQDASALS-----------RLLLLVQNKQGYLNLSELLARAWTQQGNKAQ 110

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             + L WL+E+G EGLI+L+G  +GP+ +A        A    L    +F  R Y+ LQR
Sbjct: 111 ASVKLDWLKELG-EGLIVLSGAQAGPVGQALLQGDVARALDAALQLAGVFTHRFYLELQR 169

Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
             R  D       VQLA    LP+VAT+   F   +D+EAH+  + +A   ++S   R  
Sbjct: 170 AGRPDDEAHVVATVQLAARAGLPVVATHPIQFAGPDDFEAHEARVCIADGEILSNPRRVR 229

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
           R T + Y K+ ++M ++F+D+P AL NT+EIARRC+  L +  P LP F   E +  +  
Sbjct: 230 RFTREQYFKSSAQMQALFADVPSALANTLEIARRCNLTLVLDKPQLPDFPTPEVNGQRMT 289

Query: 307 EENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++  R  +  GL+ R+A     A  +G     Y  RL+FELN I +M F GYFLIV DF
Sbjct: 290 PDDYFRYASHEGLKERMAHLYPDAAQRGQEMPRYLARLEFELNTIVKMGFPGYFLIVGDF 349

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           I WAK N  PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDFC
Sbjct: 350 INWAKNNGCPVGPGRGSGAGSLVAYSLKITDLDPLRYNLLFERFLNPERVSMPDFDIDFC 409

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
           Q  R+ VI YV++KYG + V+QI+TFG++ A+AA+RDVGR L M Y+  D + KLIPN P
Sbjct: 410 QTNRNLVIDYVKSKYGKDAVSQIVTFGTMAARAAVRDVGRVLDMSYTFCDGISKLIPNKP 469

Query: 484 AHPVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
              VSLQ              A+  +    E    +  V  LLE+++KLEGL R+   HA
Sbjct: 470 GVSVSLQLPPPDRKKDDKTVYAVEAEPLLAEREAKEEDVKTLLELARKLEGLTRNVGMHA 529

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G++I    L+   P+Y+   SD  V+QF+   +E  GL+KFDFLGL TLT+L+ + DF+
Sbjct: 530 GGVLIAPGKLTDFCPLYQQPGSDSAVSQFDKYDVEAIGLVKFDFLGLATLTILEIARDFI 589

Query: 590 AQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            +R    +      +P DD   Y L     T  +FQ ES GM+  L+  +P  +ED+IAL
Sbjct: 590 IERHRGQENFAFENLPLDDMRVYKLFQEGKTEAVFQFESRGMQGMLKDAKPTRLEDLIAL 649

Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            +LYRPGP+D I  +  RK+G+E +   HPL+  ML ET G+++YQEQVMQ AQ+L GYS
Sbjct: 650 NALYRPGPMDLIPSFVARKHGREVVEYPHPLVAEMLSETYGIMVYQEQVMQTAQILGGYS 709

Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
           L  AD+LRRAMGKK  +EM +Q++ F  GA+KN I++  A  +F+L+ KFA YGFNKSHA
Sbjct: 710 LGGADMLRRAMGKKDADEMARQRQIFRDGAAKNNINQAKADEVFDLMEKFAGYGFNKSHA 769

Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
           AAY++++Y TAW+K HY  EF  A+MT+EMD+ +K+K   +DA +  +   PP VN    
Sbjct: 770 AAYSLLAYHTAWLKVHYTAEFFCANMTVEMDDTDKLKVLYEDALKMGLTFEPPDVNRGGS 829

Query: 827 DFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK----------PFDSLEDFCSRVDSK 875
            F+ + D  I Y L+AIKG G      I+ A   +          PF SL DFC RVD  
Sbjct: 830 RFEPISDKVIRYGLSAIKGSGQQAIEAIVAAREGRGVGPSGDVAGPFKSLFDFCVRVDRS 889

Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE---KG 932
           ++N+R +E+L+ AGA D    +R  LL S D   ++      N       +F  +   +G
Sbjct: 890 RVNKRTVEALIKAGAFDAIQLNRASLLASTDLAFEFGAAALANAN--QGGLFDMDDDAQG 947

Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
           + + +  L +        R   E+  +GFY SGH  D
Sbjct: 948 SSTQEPELVQAVPWGVKERLTFEKTAVGFYLSGHLFD 984


>gi|254360522|ref|ZP_04976671.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            PHL213]
 gi|153091062|gb|EDN73067.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            PHL213]
          Length = 1142

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1036 (40%), Positives = 607/1036 (58%), Gaps = 48/1036 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            ++ G   + +++   AA+   A+ +TD  N    ++F  +A  AGI+PIIG  + +    
Sbjct: 1    MINGLAKVKSLVKTAAANNMVAMGLTDFINFCGLVKFYGEALGAGIKPIIGADVYV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC-LSWLQEIG 140
                T  G   +     + LL    +GY  + +++S+ Y   QG     +    WL E+ 
Sbjct: 57   ---RTESGNEDYF---ELTLLAKNNKGYHNITQILSKAY--QQGYVEFPMVEREWLAEL- 107

Query: 141  TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQ 199
             EG+I+L+GG  G + +A    + Q AE++L  +++ + +  Y+++ R    D  R   Q
Sbjct: 108  NEGIIILSGGRMGDVGKALLKENRQEAEEKLAFYQQYYPNHFYLSVCRTGRADEERYIKQ 167

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRS 258
             V+ +  + +PLVA N+ +FL E+D++AH++ +A+  S  +    RP+  +P  Y +   
Sbjct: 168  AVEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPKQYFRTEE 227

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
            EM  +F+DLP AL NTVEIA+RCS  +++    LP F   E        E+ L  K+  G
Sbjct: 228  EMCKLFADLPSALANTVEIAKRCSVTVRLGEYFLPNFPTGELST-----EDFLVKKSKEG 282

Query: 319  LEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
            LE RL         +      Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVG
Sbjct: 283  LEERLEFLFPDPEERANKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVG 342

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
            PGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D RD VI +V 
Sbjct: 343  PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVA 402

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              YG + V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLIP DP   +  +A A +
Sbjct: 403  ETYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPGMTLE-KAFAAE 461

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
             +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PV
Sbjct: 462  PKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLHPV 521

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYH 610
            T F+   +E AGL+KFDFLGL+TLT+++ +L+ + +R  +     + +  IP DD +++ 
Sbjct: 522  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINERLAREGKEPIRIETIPLDDKKSFA 581

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGK 668
            LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+++ +V N  +RK+GK
Sbjct: 582  LLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGK 641

Query: 669  EKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            E++        H  + P+L+ T GVI+YQEQVMQIAQ L+GY+L  AD+LRRAMGKK  E
Sbjct: 642  EEVSYPDPQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPE 701

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM  Q+E F  GA   GI   +A  IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HY
Sbjct: 702  EMAAQREVFEKGAEAKGIDGKLAGQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 761

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAI 842
            P EF+AA MT EMDN +KI  F  +     + ++PP VN+    F V +   I Y L AI
Sbjct: 762  PAEFMAAVMTSEMDNTDKIVGFYDECMNMGLTVVPPDVNSGKHRFSVNEKGEIVYGLGAI 821

Query: 843  KGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGVG      I+ A   +  F  L D  +RVD KK+NRR  ESL+ +GA D  G  R  L
Sbjct: 822  KGVGEGPIEAILAARQKEGKFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAAL 881

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS-----SVRFENEQ 956
            +++L++  K +    K       ++F    G  ++     + +  N+      V  + E+
Sbjct: 882  MKNLEDALKASDQHAKMEELGQSDMF----GVLTETPEEVQNAYANTPKWSEQVILDGER 937

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LG Y SGHP+  +   L         E   T RG    ++ +V++ +   T++GSRIG
Sbjct: 938  ATLGLYLSGHPIGRFLKELSHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVTKRGSRIG 997

Query: 1017 WVTFSEPAKEYEANFF 1032
              T  + + + +   F
Sbjct: 998  IATIEDRSGKLDITLF 1013


>gi|68249339|ref|YP_248451.1| DNA polymerase III subunit alpha [Haemophilus influenzae 86-028NP]
 gi|68057538|gb|AAX87791.1| DNA polymerase III alpha subunit [Haemophilus influenzae 86-028NP]
          Length = 1159

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/1053 (39%), Positives = 615/1053 (58%), Gaps = 56/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  ++G++
Sbjct: 5    PRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLSSGMK 64

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG  + +      K    G   F     + LL    EGY+ +  L+S+ Y   +G   
Sbjct: 65   PIIGADVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QRGYND 112

Query: 129  V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            +  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+ L 
Sbjct: 113  LPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYLALS 171

Query: 188  RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R    +  R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +    RP
Sbjct: 172  RTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDPKRP 231

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +      
Sbjct: 232  KCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL----- 286

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLIV +
Sbjct: 287  STEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVME 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP D
Sbjct: 407  CMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   ++ +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    ++  
Sbjct: 467  PGMTLA-KAFETEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLITDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KVD 597
             P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R V     +VD
Sbjct: 526  APLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKPRVD 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+ +
Sbjct: 586  IAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQS 645

Query: 658  IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  A
Sbjct: 646  GMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     F V
Sbjct: 766  LVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHHFSV 825

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFA 888
             +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL+ +
Sbjct: 826  NEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESLIMS 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D  G  R  L ++L++  + +    K+      ++F     T  D        VEN+
Sbjct: 886  GAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHED--------VENA 937

Query: 949  SVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
                         + E+  LG Y S HP+  Y   L        ++     RG    +A 
Sbjct: 938  YANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAG 997

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T+KG+R+G  T  + +   +   F
Sbjct: 998  LVVASRIAMTKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|206901842|ref|YP_002251105.1| DNA polymerase III alpha subunit [Dictyoglomus thermophilum H-6-12]
 gi|206740945|gb|ACI20003.1| DNA polymerase III alpha subunit [Dictyoglomus thermophilum H-6-12]
          Length = 1127

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/1026 (39%), Positives = 638/1026 (62%), Gaps = 27/1026 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+GA  ++ ++D+      PA+AITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHVHTEYSLLDGACRIDELIDQALEFNMPAVAITDHGVMYGVIDFYKNAKEKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +      +   + +T    +  ++LL    EGY+ LI++VS +  L+      
Sbjct: 62   IIGCEVYV--APGSRFDKKQRT---DLYHLILLAKDFEGYKNLIKIVS-LSFLEGFYYKP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L+E  ++G+I L+   +G I      N+ + A+  +  +  +FG+  Y+ LQ +
Sbjct: 116  RVDKELLREY-SKGIIALSSCLAGEIPSYILQNNLEKAKNAIKEYLDIFGEDFYLELQNN 174

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ Y  S +++L+    +PLVATN+  +L +ED E HD+L+ +   + ++ KDR R 
Sbjct: 175  GMEEQEYVNSYLIKLSRELNVPLVATNDVHYLRKEDAEIHDILLCIQTGSKLNDKDRLRF 234

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + Y K+  EM ++F D+P+A+ENT++IA +C+  + ++  ILP F   E + +    
Sbjct: 235  KTNEFYFKSPEEMKALFKDVPDAIENTLKIAEKCNVEIPLNNVILPVFEVPEGETL---- 290

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++        G + R  +         ++ R+RL +E++VI +M FSGYFLIV DF+ +A
Sbjct: 291  DSYFERLCWEGAKKRFGEDI------PENIRERLSYEISVIKQMGFSGYFLIVQDFVNYA 344

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K   IPVGPGRGS AGS+ +Y L IT+I+P R+ L+FERFLNP+R++MPD DIDFC +RR
Sbjct: 345  KSRGIPVGPGRGSAAGSLVSYVLGITNIEPTRWGLIFERFLNPERVTMPDIDIDFCFERR 404

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI YV+NKYG E VAQIITFG++ A+A++RDVGR L +PY++VDR+ KLIP  P   +
Sbjct: 405  EEVIEYVRNKYGKEHVAQIITFGTMAARASVRDVGRVLDVPYNEVDRIAKLIP--PNTSI 462

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+      R     +P   R++EI++++EG  RHAS HAAGIVI   PL + VP+  
Sbjct: 463  E-EALNTSEELRNLVENNPQAKRIIEIAKRIEGNARHASIHAAGIVISKDPLMEYVPLQV 521

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606
               +D+ VTQ  M  +E+ GL+K DFLGL+TLT++  ++  + +  G+++D++ I   D 
Sbjct: 522  MNGTDV-VTQLPMTNLEELGLLKMDFLGLRTLTVIYDTIKKIKENYGIEIDINNISLSDE 580

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y LL    T+G+FQLES GMR  L  ++P+  ED+IA+++LYRPGP+  +  Y  RK 
Sbjct: 581  KVYELLQKGETIGVFQLESRGMRNLLRDIKPEKFEDLIAVLALYRPGPLGRLESYIKRKR 640

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+EK+  +HP ++P+L ET GVIIYQEQVM+IA  L+G++L +ADVLRRAMGKK  E M+
Sbjct: 641  GEEKVEYMHPALEPILAETYGVIIYQEQVMEIAHRLAGFTLGQADVLRRAMGKKKPEVME 700

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +Q+  F+ GA + GI + +A+ IFE +AKFA+YGFNKSH+AAYA +S+QTA++K +YP E
Sbjct: 701  EQRGIFVKGAVERGIPENVAIEIFEDMAKFAEYGFNKSHSAAYAFVSFQTAYLKAYYPKE 760

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            ++A+ +T   ++  K+ K+  +A++  I+I+PP VN   VDF V    I + L+AIK VG
Sbjct: 761  YMASLLTSVKNSTTKLSKYIAEAKRIGIKILPPDVNESVVDFTVTPQGIRFGLSAIKNVG 820

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
             + A  I+E  +   F S+ DF  R+ SK +N+R LESL+ +GA D FGYSR  LL+++D
Sbjct: 821  ESVAEAIVEERSRGRFKSIFDFIKRLSSKVINKRALESLIKSGAFDSFGYSRRALLENID 880

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             I + AQ +++    +   I             + +FS++      E E+ +LGFY S  
Sbjct: 881  KILESAQVMKRAHIGQVSLIDLESLPQEEIINNMPEFSIDEI---LEMEKEMLGFYVSYD 937

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P +  + I  K+     ++ V    G+ + +  ++ + ++   RK  ++ + T  +   E
Sbjct: 938  PQEELRKISEKLFDYTIDDLVEVESGSQVIVPGILKNVREVIDRKNQKMLFATLEDFTGE 997

Query: 1027 YEANFF 1032
             E   F
Sbjct: 998  AEITVF 1003


>gi|172061275|ref|YP_001808927.1| DNA polymerase III subunit alpha [Burkholderia ambifaria MC40-6]
 gi|171993792|gb|ACB64711.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MC40-6]
          Length = 1190

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1032 (40%), Positives = 619/1032 (59%), Gaps = 60/1032 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F Q+A   GI+
Sbjct: 17   PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 76

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 77   PIAGC--------DVWITNPDDRDKPS--RLLLLVKDKVGYLNLCELLSKAWLTNQYRGR 126

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL    ++GL+ L+G   G I  AF   + + A +    + K+F    Y+ LQR
Sbjct: 127  AELDASWLDGELSQGLLALSGAQQGDIGLAFAAGNEEAARRHAERWAKVFPGGFYIELQR 186

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q   LA +  LP+VAT+ + F++++D+ AH+  + ++   +++   R 
Sbjct: 187  YGQPGAEAYIQ-QAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANPRRQ 245

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T D Y + + EMV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 246  KRFTTDQYFRTQDEMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 303

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RL Q       +      Y +RL+FE   I +M F GYFLIVAD
Sbjct: 304  --DDYLVQLSKEGLEKRLEQLFPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 361

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 362  FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 421

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 422  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 481

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 482  PGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 541

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +    K D SL
Sbjct: 542  FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKADWSL 601

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 602  AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 661

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 662  PSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 721

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 722  KKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 781

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGD----- 832
            +K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+ VG+     
Sbjct: 782  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLVVLPPDINQSHYRFEPVGEADGKR 841

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA 
Sbjct: 842  SRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRVVNRRTVEALIRAGAF 901

Query: 892  DCFGYSRMQLLQSL----------DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            D    +R Q+L S+                A   +    + H +    E   + DK    
Sbjct: 902  DSLNANRAQMLASVPLAMEAAEQAAANAMQAGLFDMGAESPHAHALVDEP-AWDDK---- 956

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAM 1000
                     R + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A +
Sbjct: 957  --------RRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKIGDLKEGRDKLVAGI 1004

Query: 1001 VVSKQQKKTRKG 1012
            + S + + T++G
Sbjct: 1005 IASLRTQMTQRG 1016


>gi|171318166|ref|ZP_02907332.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MEX-5]
 gi|171096634|gb|EDT41523.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MEX-5]
          Length = 1177

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1032 (40%), Positives = 619/1032 (59%), Gaps = 60/1032 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F Q+A   GI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNPDDRDKPS--RLLLLVKDKVGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL    ++GL+ L+G   G I  AF   + + A +    + K+F    Y+ LQR
Sbjct: 114  AELDASWLDGELSQGLLALSGAQQGDIGLAFAAGNEEAARRHAERWAKVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q   LA +  LP+VAT+ + F++++D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T D Y + + +MV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFTTDQYFRTQDDMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RL Q       +      Y +RL+FE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSKEGLEKRLEQLYPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +    K D SL
Sbjct: 529  FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKADWSL 588

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGD----- 832
            +K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+ VG+     
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLVVLPPDINQSHYRFEPVGEADGKR 828

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA 
Sbjct: 829  SRTIRYGLGAVKGSGQNAIEEILRAREEKPFSDLFDFCERIDRRVVNRRTVEALIRAGAF 888

Query: 892  DCFGYSRMQLLQSL----------DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            D    +R Q+L S+                A   +    + H +    E   + DK    
Sbjct: 889  DSLNANRAQMLASVPLAMEAAEQAAANAMQAGLFDMGAESPHAHALVDEP-AWDDK---- 943

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAM 1000
                     R + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A +
Sbjct: 944  --------RRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKIGDLKEGRDKLVAGI 991

Query: 1001 VVSKQQKKTRKG 1012
            + S + + T++G
Sbjct: 992  IASLRTQMTQRG 1003


>gi|161524140|ref|YP_001579152.1| DNA polymerase III subunit alpha [Burkholderia multivorans ATCC
            17616]
 gi|189351103|ref|YP_001946731.1| DNA polymerase III subunit alpha [Burkholderia multivorans ATCC
            17616]
 gi|160341569|gb|ABX14655.1| DNA polymerase III, alpha subunit [Burkholderia multivorans ATCC
            17616]
 gi|189335125|dbj|BAG44195.1| DNA polymerase III alpha subunit [Burkholderia multivorans ATCC
            17616]
          Length = 1179

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1032 (40%), Positives = 619/1032 (59%), Gaps = 60/1032 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F ++A + G++
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARSKGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNPDDRDKPS--RLLLLVKNKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+   +EGL+ L+G   G I  A    + + A +    + K+F    Y+ LQR
Sbjct: 114  AELDASWLEGELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + Y + + EMV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFTTEQYFRTQDEMVALFADLPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RL Q       +      Y +RL+FE   I +M F GYFLIVAD
Sbjct: 291  --DDYLIQLSKEGLEKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV++KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKDKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 529  FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  SQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+S+  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMVKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TPCVDFKVGD 832
            +K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N       P  +     
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCIMNNLVVLPPDINQSHYRFEPVAEPDGKR 828

Query: 833  NR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +R I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA 
Sbjct: 829  SRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTVEALIRAGAF 888

Query: 892  DCFGYSRMQLLQSLD----------NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            D    +R QLL S+                A   +    + H +    E   + DK    
Sbjct: 889  DSLNANRAQLLASVTLAMEAAEQAEANALQAGLFDMGAESPHAHALVDEP-AWDDK---- 943

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAM 1000
                     R + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A +
Sbjct: 944  --------RRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKIGELKEGRDKLVAGI 991

Query: 1001 VVSKQQKKTRKG 1012
            + S + + T++G
Sbjct: 992  IASLRTQMTQRG 1003


>gi|26988338|ref|NP_743763.1| DNA polymerase III subunit alpha [Pseudomonas putida KT2440]
 gi|24983087|gb|AAN67227.1|AE016349_8 DNA polymerase III, alpha subunit [Pseudomonas putida KT2440]
          Length = 1174

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1066 (39%), Positives = 609/1066 (57%), Gaps = 62/1066 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL+VHS +SL++G + +  +   +     PA+AITD +N+ S ++F + A  AGI
Sbjct: 2    SVPFVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G  L +           G  P   +  I  L    +GY+ L EL+SR +   Q   
Sbjct: 62   KPICGADLWL----------AGADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             V +   W+    +EGLI L+ G  G I  A        AE  L  +  +F +R YV +Q
Sbjct: 112  LVILQREWIAP-ASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQ 170

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R +R  D       V LA     PLVATN+  F+ + D++AH+  + +     +    RP
Sbjct: 171  RTNRARDEEYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRP 230

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R   D  YLK+  EM  +FSDLP+A+ NTVEIA+RC+  +Q+    LP F       I  
Sbjct: 231  RCYSDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI-- 288

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIV 360
              ++ LR+ A  GLE RLA          Y    Q Y  RL FEL++I +M F GYFLIV
Sbjct: 289  --DDYLRHVAHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIV 346

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+
Sbjct: 347  MDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDV 406

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI YV   YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP
Sbjct: 407  DFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP 466

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +    +  +A   +   R+    D     + +++ KLEG+ R    HA G+VI    L+
Sbjct: 467  FEVGMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLT 525

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ + +   K     
Sbjct: 526  DFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +++  IP DD +TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+
Sbjct: 586  LNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPL 645

Query: 656  DNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 646  QSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKF 825

Query: 829  KV-GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V  D RI Y L AIKGVG      I+EA A   PF  L DFC R+D K++N+R L++LV
Sbjct: 826  TVNNDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALV 885

Query: 887  FAGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---- 927
             +GALD  G                +R  LL +L    K A+       + H ++F    
Sbjct: 886  RSGALDRLGPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMF 945

Query: 928  -AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
             A +   +++   + + +++    R + E+  LG Y +GHP+D Y+  +R+   +   + 
Sbjct: 946  DAADVDVYANHRKVRELTLKE---RLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDL 1002

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +     I  A M+++ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1003 KPSRETQTI--AGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046


>gi|221199588|ref|ZP_03572632.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2M]
 gi|221205512|ref|ZP_03578527.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2]
 gi|221174350|gb|EEE06782.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2]
 gi|221180873|gb|EEE13276.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2M]
          Length = 1179

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1032 (40%), Positives = 620/1032 (60%), Gaps = 60/1032 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F ++A + G++
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARSKGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNPDDRDKPS--RLLLLVKNKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+   +EGL+ L+G   G I  A    + + A +    + K+F    Y+ LQR
Sbjct: 114  AELDASWLEGELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + Y + + EMV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFTTEQYFRTQDEMVALFADLPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RL Q       +      Y +RL+FE   I +M F GYFLIVAD
Sbjct: 291  --DDYLIQLSKEGLEKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV++KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKDKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 529  FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  SQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+S+  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMVKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TPCVDFKVGD 832
            +K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N       P  +     
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCIMNNLVVLPPDINQSHYRFEPVAEPDGKR 828

Query: 833  NR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +R I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA 
Sbjct: 829  SRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTVEALIRAGAF 888

Query: 892  DCFGYSRMQLLQSL----------DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            D    +R QLL S+          +     A   +    + H +    E   + DK    
Sbjct: 889  DSLNANRAQLLASVPLAMEAAEQAEANALQAGLFDMGAESPHAHALVDEP-AWDDK---- 943

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAM 1000
                     R + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A +
Sbjct: 944  --------RRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKIGDLKEGRDKLVAGI 991

Query: 1001 VVSKQQKKTRKG 1012
            + S + + T++G
Sbjct: 992  IASLRTQMTQRG 1003


>gi|294635137|ref|ZP_06713647.1| DNA polymerase III, alpha subunit [Edwardsiella tarda ATCC 23685]
 gi|291091473|gb|EFE24034.1| DNA polymerase III, alpha subunit [Edwardsiella tarda ATCC 23685]
          Length = 904

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/918 (43%), Positives = 573/918 (62%), Gaps = 38/918 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P F+HL VHS YS+++G    + ++ K+AA   PA AITD  NL   ++F   A  AGI+
Sbjct: 4   PRFIHLHVHSDYSMIDGLAKTSPLVKKVAALGMPAFAITDHTNLCGLVKFYGSAHGAGIK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           P++G   D+ M+  + M ++       + S+ +L S   GYQ L +L+S  Y    G + 
Sbjct: 64  PLVGA--DVLMRSEM-MGDE-------LASLTILASDNTGYQNLTQLISHAYQRGYGAEG 113

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I   WL +   +GLI+L+G   G + +     +     + +  +++ F D  ++ L R
Sbjct: 114 PTIDRDWLVQY-RQGLILLSGARQGDVGKLLLRGNQASVNECVDFYQRYFPDCYFLELVR 172

Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  +       V+LA   +LPLVA+N+  FL   D++AH++ +A+     +    RPR
Sbjct: 173 TGRPDEENYLHMAVELAQQRDLPLVASNDVRFLEASDFDAHEIRVAIHDGYTLDDPKRPR 232

Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +   Y+++ +EM  +F+DLPEAL+N+VEIA+RC+  +++    LP+F   E       
Sbjct: 233 NYSAQQYMRSEAEMCELFADLPEALQNSVEIAKRCNVTIRLGEYFLPQFPTGEM-----T 287

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363
            E  L  KA  GLE RL      +   A+    Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288 TEAFLVKKAHEGLEERLTFLFPDEAERARCRPPYDERLEIELKVINQMGFPGYFLIVMEF 347

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           IQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLAFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            ++RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408 MEKRDRVIDHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
           P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  +     VD+
Sbjct: 527 PLYCDAEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRARHGLEPVDI 586

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
           + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587 AAIPLDDQKSFDILQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           +V N  +RK+G+E++        H  + P+L+ T GVI+YQEQVMQIAQ+L+GYSL  AD
Sbjct: 647 MVDNFIDRKHGREELSYPDREWQHESLKPVLEPTYGVILYQEQVMQIAQVLAGYSLGGAD 706

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           +LRRAMGKK  EEM KQ+  F  GA  NG+   +A++IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707 LLRRAMGKKKPEEMAKQRSVFEEGARNNGVDGELAMHIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
           +SYQT W+KTHYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 767 VSYQTLWLKTHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYHFHVN 826

Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA---SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           D   I Y + AIKGVG      I+EA        F  L D C+R D+KKLNRRV+E L+ 
Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIEARNRGEQGYFKDLFDLCARTDTKKLNRRVMEKLIM 886

Query: 888 AGALDCFGYSRMQLLQSL 905
           +GA D  G  R  L+ SL
Sbjct: 887 SGAFDRLGPHRAALMSSL 904


>gi|313500226|gb|ADR61592.1| DnaE [Pseudomonas putida BIRD-1]
          Length = 1174

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1066 (39%), Positives = 609/1066 (57%), Gaps = 62/1066 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL+VHS +SL++G + +  +   +     PA+AITD +N+ S ++F + A  AGI
Sbjct: 2    SVPFVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G  L +           G  P   +  I  L    +GY+ L EL+SR +   Q   
Sbjct: 62   KPICGADLWL----------AGADPDAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             V +   W+    +EGLI L+ G  G I  A        AE  L  +  +F +R YV +Q
Sbjct: 112  LVILQREWIAP-ASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQ 170

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R +R  D       V LA     PLVATN+  F+ + D++AH+  + +     +    RP
Sbjct: 171  RTNRARDEEYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRP 230

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R   D  YLK+  EM  +FSDLP+A+ NTVEIA+RC+  +Q+    LP F       I  
Sbjct: 231  RCYSDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI-- 288

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIV 360
              ++ LR+ A  GLE RLA          Y    Q Y  RL FEL++I +M F GYFLIV
Sbjct: 289  --DDYLRHVAHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIV 346

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+
Sbjct: 347  MDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDV 406

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI YV   YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP
Sbjct: 407  DFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP 466

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +    +  +A   +   R+    D     + +++ KLEG+ R    HA G+VI    L+
Sbjct: 467  FEVGMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLT 525

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ + +   K     
Sbjct: 526  DFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +++  IP DD +TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+
Sbjct: 586  LNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPL 645

Query: 656  DNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 646  QSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKF 825

Query: 829  KV-GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V  D RI Y L AIKGVG      I+EA A   PF  L DFC R+D K++N+R L++LV
Sbjct: 826  TVNNDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALV 885

Query: 887  FAGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---- 927
             +GALD  G                +R  LL +L    K A+       + H ++F    
Sbjct: 886  RSGALDRLGPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMF 945

Query: 928  -AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
             A +   +++   + + +++    R + E+  LG Y +GHP+D Y+  +R+   +   + 
Sbjct: 946  DAADIDVYANHRKVRELTLKE---RLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDL 1002

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +     I  A M+++ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1003 KPSRETQTI--AGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046


>gi|90413544|ref|ZP_01221535.1| DNA polymerase III subunit alpha [Photobacterium profundum 3TCK]
 gi|90325476|gb|EAS41959.1| DNA polymerase III subunit alpha [Photobacterium profundum 3TCK]
          Length = 1158

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/1052 (38%), Positives = 624/1052 (59%), Gaps = 54/1052 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL  HS +S+++G   ++ ++ K+A    PA+A+TD  NL   ++F   A  AG++
Sbjct: 4    PRFIHLHTHSDFSMVDGLSKVSPLVKKVAEIGMPAMALTDFTNLCGLVKFYFAAHGAGMK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +  ++   + N+       +  + +L +  +GYQ L  L+S+ YL    +  
Sbjct: 64   PIIGADFKVHSEE---LDNE-------LADLTILAADNDGYQNLTMLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +  ++GLI+L+G   G + +A    +  +  + +  ++  F D  Y+ L R
Sbjct: 114  PVIDKEWLAQY-SKGLILLSG-RCGDVGKALLKGNKSLVNRCVEFYQTHFEDSFYLELVR 171

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D        V+LA   +LP+VATN+  F+S E ++AH++ +++     +   +RP+
Sbjct: 172  TGRPDEDAFIHFAVELAANEDLPVVATNDVRFISAEQFDAHEIRVSIHDGYTIVDPNRPK 231

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + +P  YL+   EM  +FSD+PEAL N+VEIA+RC+  +++    LP F   +       
Sbjct: 232  LYSPQQYLRTEEEMCELFSDIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGDL-----S 286

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 287  TEDFLVVKSREGLERRLAFLFPDEAVRVEKRPEYDERLEIELEVINQMGFPGYFLIVMEF 346

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFDIDFC
Sbjct: 347  IQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLEFDLLFERFLNPERVSMPDFDIDFC 406

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDRL K+IP +P
Sbjct: 407  MDKRDLVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKMIPAEP 466

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + +  +A  AD  V  L+++ + LEG+ R+A  HA G+VI    ++   
Sbjct: 467  GMTLA-KAFEAEPQLGDAYNADEEVKALIDMCRILEGVTRNAGKHAGGVVISPTTITDFS 525

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +     A+    +++
Sbjct: 526  PLYCDAEGANPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRREAEGKEPINI 585

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP  D +++ +L    +  +FQLES GM+  ++ +QPD  ED+IALV+L+RPGP+ + 
Sbjct: 586  ASIPMADKKSFDMLQRSESTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSG 645

Query: 659  VVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N  +RK+G+E++        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 646  MVDNFIDRKHGREEVSYPDATWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGAD 705

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 706  MLRRAMGKKKPEEMAKQRTTFEEGAVNNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 765

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT ++K HYP EF+AA MT +MDN +KI     +  +  I ++PP VN     F V 
Sbjct: 766  VSYQTLYLKAHYPAEFMAAVMTADMDNTDKIIGLVDECLRMKIPLLPPDVNKGLYRFNVD 825

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +   I Y + A+KGVG     +++EA      F  L DFC+R+D+KK+N+RVLE L+ +G
Sbjct: 826  EQGAIVYGIGAVKGVGEGPIENLIEAREKGGHFKDLFDFCARIDTKKVNKRVLEKLIKSG 885

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            A+D  G +R  ++ +L++  K A         +H    A  +      +T     VE + 
Sbjct: 886  AMDRLGPNRATMMATLNDAIKAA--------GQHHQAEAFGQADMFGVLTAAPEEVEQAY 937

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                     +  E E+  LG Y +GHP++ Y   L+       +++  T R     +A +
Sbjct: 938  ANIPEWPDKIWLEGERETLGLYLTGHPINAYISELKHYTTWRLKDANPTGRDKVASVAGL 997

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V++ +   T++G+RIG +T  + +   E   F
Sbjct: 998  VIAARVMTTKRGTRIGLMTLDDRSGRMEVMLF 1029


>gi|194365029|ref|YP_002027639.1| DNA polymerase III subunit alpha [Stenotrophomonas maltophilia
           R551-3]
 gi|194347833|gb|ACF50956.1| DNA polymerase III, alpha subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 1196

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1011 (40%), Positives = 608/1011 (60%), Gaps = 65/1011 (6%)

Query: 11  FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56
           FVHL VH+ +SL +  + +               N+L +      PA+A+TD NNLF+ +
Sbjct: 6   FVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRSVELGLPALAVTDLNNLFALV 65

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           +F + A   GI+PI G         ++ +  +G+ P+     + LL    EGY  L  L+
Sbjct: 66  KFYKAAEGVGIKPIAGA--------DVLIAEEGQDPW----RMTLLCRDREGYLSLSRLL 113

Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           +R ++     +  V I   WL+  G   L  L G  S    R       ++AE++L  ++
Sbjct: 114 TRAWMEGHRPEGGVAIHPDWLK-AGNANLFALAGRQS-LAGRLALDGKHELAEQQLADWQ 171

Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           ++FGD L++ L R    G + + +  ++  A    LP+VA+N+  FLS  D+ AH+  + 
Sbjct: 172 RVFGDGLHLELTRTGREGEETFNQFALMA-AGQRGLPVVASNDVRFLSPTDFSAHEARVC 230

Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
           ++   V+    RPR   D  YLK+  EM ++F+D+P+A++NT+ +A RC+  +++    L
Sbjct: 231 ISTGRVLDDPKRPREYSDQQYLKSAEEMCALFADIPDAIDNTLALAERCNIEMRLGTYFL 290

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           P +   + + +    +   R+    GLE RL +  +A G   ++Y +RL+FELN I +M 
Sbjct: 291 PNYPVPDDETLDTWIQKMSRD----GLEERLEKNPLAPGKTREEYFERLEFELNTIIKMG 346

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R
Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERFLNPER 406

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
           +SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L  PY  V
Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGFPYGLV 466

Query: 473 DRLCKLIPN------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
           D + KLIPN                P S  A A+  +  E+   +  V  L++++ +LE 
Sbjct: 467 DGVSKLIPNILGIHLKDALGKGKEGPSSEMASAELIQRYES---EDDVRDLIDLALQLED 523

Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGL 576
           L R+A  HA G+VIG  PLS+  P+Y +   +     PVTQF+   +E+ GL+KFDFLGL
Sbjct: 524 LTRNAGKHAGGVVIGPEPLSEFCPLYAEHDENGLGKNPVTQFDKNDVEEVGLVKFDFLGL 583

Query: 577 KTLTLLQKSLDFLAQR----GVK-VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQ 630
           +TLT++  ++  + +R    G+  VD++ IP DD  TY  +   G  G +FQ ESSGMR+
Sbjct: 584 RTLTIIDWAVKAINKRHERAGIPPVDIAAIPLDDTPTYKDIFANGNTGAVFQFESSGMRR 643

Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
            L+  +PD  ED+IALVSLYRPGP+D I  +N RK+G+E+I+   P  + +LK+T G+++
Sbjct: 644 LLKDARPDRFEDLIALVSLYRPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGIMV 703

Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
           YQEQVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K+G+ +  A  IF
Sbjct: 704 YQEQVMQMAQIVGGYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKDGVDEAKADAIF 763

Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
           +L+ KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ ++DN EK+  F  + R
Sbjct: 764 DLMEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDLDNTEKVVGFLDEVR 823

Query: 811 QFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDF 868
              + ++PP VN     F+ V  + I Y L AIKGVG      ++ E      +  L DF
Sbjct: 824 NLGLTVLPPKVNHSAFMFEAVTPDTIQYGLGAIKGVGQGACEAVVDERLKGGDYKDLLDF 883

Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
           C+RV S KLNRR LE+++  GALD  G++R  L+  L  + K  + + + R +   ++F 
Sbjct: 884 CTRVGSAKLNRRTLEAMINCGALDELGHNRASLMLQLPEVIKATEQMARERASGQNSLFG 943

Query: 929 H-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
             +  T + ++ L +        R   E+  LGFY SGHP D ++  +R +
Sbjct: 944 GPDPSTVTIQLDLPEAEEWPLLQRLNGERDTLGFYLSGHPFDPWRDDVRDL 994


>gi|330427709|gb|AEC19043.1| DNA polymerase III subunit alpha [Pusillimonas sp. T7-7]
          Length = 1163

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1030 (40%), Positives = 621/1030 (60%), Gaps = 48/1030 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SPSFVHL+VHS +S+++G   + +++ K A   QPA+A+TD +NLF  ++F + A  AG+
Sbjct: 7    SPSFVHLRVHSEFSVVDGIARIPDLVKKAAEYGQPAMALTDLSNLFGFIKFYKAARKAGV 66

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G   D+ +Q+          P+     ++LL S  +GY  L EL+SR +L +Q + 
Sbjct: 67   KPIAGS--DVWLQNE----QDRDKPY----RLLLLASDQQGYLALCELLSRAWLDNQYRG 116

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WLQ  G  GLI+L+GG +G I +     + + A     ++ + F D  ++ LQ
Sbjct: 117  RAEIRREWLQ--GKTGLIILSGGRAGDIGQLLEAGNVEEAAVVAASWARAFPDSYFIELQ 174

Query: 188  R--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R  H G + Y ++  ++LA    LP+VAT+   FL  +D+ AH+  + +A    +    R
Sbjct: 175  RSGHEGDETYVQA-AMRLAGRVGLPVVATHPVQFLHADDFRAHEARVCIADGEQLGNAKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R  T + YL + ++M   F+D+P AL NT+EIA+RC+  L +  P LP F   +   + 
Sbjct: 234  VRKYTTEQYLLDSADMELRFADVPSALANTLEIAKRCNLTLVLDKPRLPNFPTPQGVTL- 292

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ---RLDFELNVIARMKFSGYFLIVA 361
               ++ L   A  GL VR+AQ    +    + Y Q   RL +E   I  M F GYFLIVA
Sbjct: 293  ---DDYLVQLAEEGLAVRMAQLFPEEAERQEKYPQYLERLQWECKTIIGMGFPGYFLIVA 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI W K N +PVGPGRGSGAGS+ AY+L ITD+DP+R+ LLFERFLNP+R+SMPDFDID
Sbjct: 350  DFINWGKSNGVPVGPGRGSGAGSLVAYSLGITDLDPIRYDLLFERFLNPERVSMPDFDID 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQD R+ VI YV+ KYG E V+QI TFG+L AKA +RDVGR L+MPY   D L KLIP 
Sbjct: 410  FCQDNRERVIDYVKQKYGKEAVSQIATFGTLGAKAVVRDVGRVLEMPYMLCDGLSKLIPF 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             PA P +L+ A+ ++  F+E    D  V  L+++++ LEGL R+   HA G++I    L+
Sbjct: 470  SPADPWTLKRALEEEPAFKERYDQDEEVRALIDLARPLEGLTRNIGMHAGGVLIAPGKLT 529

Query: 541  QLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KV 596
               P+Y     D   V+QF+   +E AGL+KFDFLGL+ LT+L  ++ ++ Q        
Sbjct: 530  DFCPLYCQPGVDTSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNEDKRDF 589

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+  +P DD + Y LL+   T  +FQLES GM++ L+ ++P+  ED+IA+++LYRPGP++
Sbjct: 590  DIMALPLDDAQAYKLLSDGNTTAVFQLESRGMKELLKNLRPNTFEDVIAMLALYRPGPLE 649

Query: 657  N--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +  +V + NRK+G+ ++   HP ++P+L+ T GVI+YQEQVM I+Q++ GY+L  AD+LR
Sbjct: 650  SGMVVDFVNRKHGRAEVDYFHPDLEPVLQSTYGVIVYQEQVMLISQIIGGYTLGGADLLR 709

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM K +  F  GA + G    +AV +F+L+ KFA YGFNKSH+AAYA+I+Y
Sbjct: 710  RAMGKKKAEEMAKHRAIFEKGAVEKGYDADLAVKLFDLMEKFAGYGFNKSHSAAYALIAY 769

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDN 833
            QTAW+K ++P EFLAA+++ +MD+ +K++ F +D    ++ ++PP VN     F+ V D 
Sbjct: 770  QTAWLKYYHPAEFLAATLSSDMDDTDKVQIFWKDCLANSVTVLPPDVNASAYRFEPVADE 829

Query: 834  ---------RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLE 883
                      I Y L A+KG G      I+ A  +  P+ SL DFC RVD   +NRR +E
Sbjct: 830  FMAKGQPPRTIRYGLGAVKGTGQAAIEEIIRARTEGGPYASLFDFCRRVDRHTVNRRSIE 889

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            +L+ AGA D    +R  LL ++ N  + A+  E  R+    ++FA       +   + K 
Sbjct: 890  ALIRAGAFDAIAENRAALLATVANAIEAAEQAE--RSANQVSLFADNANDIVED-EVAKV 946

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
               +   R   E+  LGFYFSGH  D ++  +R+   +      A+    +++  A V+S
Sbjct: 947  PAWDLQTRLRQEKAALGFYFSGHLFDAWRDEVRRFAPRPLARLEAS---RSLQWFAGVLS 1003

Query: 1004 K-QQKKTRKG 1012
              + K TR+G
Sbjct: 1004 SLRPKMTRRG 1013


>gi|58426179|gb|AAW75216.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzae
            KACC10331]
          Length = 1321

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1008 (40%), Positives = 601/1008 (59%), Gaps = 62/1008 (6%)

Query: 11   FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56
            FVHL VH+ +SL +  + +               N+L +      PA+A+TD NNLF+ +
Sbjct: 131  FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVEIDMPALAVTDLNNLFALV 190

Query: 57   EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            +F + A   GI+PI G  + I   D         TP+     + LL    EGY  L  L+
Sbjct: 191  KFYKAAEGVGIKPIAGADVMIATPD--------MTPW----RMTLLCRDREGYLSLSRLL 238

Query: 117  SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +R ++     +  V I   WLQ  G   L  L G  S    R F    + +AE++L  ++
Sbjct: 239  TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFSEGRADLAEQQLADWQ 296

Query: 176  KLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            ++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+  + +
Sbjct: 297  RVFGDGLHLELTRTGRECEERFNQFALNAAGVRGLPVVASNDVRFLYASDFNAHEARVCI 356

Query: 235  AHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            +   V+    RPR   D  YLK+  EM ++F+D+P+A++NT  +A+RC+  +++    LP
Sbjct: 357  SSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFLP 416

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             +   + + +    ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I  M F
Sbjct: 417  AYPVPDDETL----DSWIRSQSRDGLAARLEKSPIAPGKTRQDYVDRLEFELDTIINMGF 472

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R+
Sbjct: 473  PGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERV 532

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y  VD
Sbjct: 533  SMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLVD 592

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLYR 523
             + KLIPN     ++L+    + +  ++ +A P           V  L++++++LE L R
Sbjct: 593  SVAKLIPN--ILGITLKDAMGEGK--DSEMASPELIQRYQVEDDVRDLMDLARQLEDLTR 648

Query: 524  HASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+TL
Sbjct: 649  NAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 708

Query: 580  TLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQALE 633
            T++  ++  +  R  +     VD++ IP DD  TY  +   G  G +FQ ESSGMR+ L+
Sbjct: 709  TIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFALGNTGAVFQFESSGMRRLLK 768

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQE
Sbjct: 769  DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 828

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L+
Sbjct: 829  QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 888

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R   
Sbjct: 889  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 948

Query: 814  IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871
            + + PP VN     F+    + I Y L AIKGVG      I+E      P+ +L DFC+R
Sbjct: 949  LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 1008

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930
            V + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   +
Sbjct: 1009 VGTTKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 1068

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                + ++ L +           +E+  LGFY SGHP D ++  +R++
Sbjct: 1069 PSAPAMRLDLPESKEWPLGQLLTSERETLGFYLSGHPFDPHREEVREL 1116


>gi|326794450|ref|YP_004312270.1| DNA polymerase III subunit alpha [Marinomonas mediterranea MMB-1]
 gi|326545214|gb|ADZ90434.1| DNA polymerase III, alpha subunit [Marinomonas mediterranea MMB-1]
          Length = 1156

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1049 (40%), Positives = 631/1049 (60%), Gaps = 48/1049 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF+HL++H+ +SL++G + +  +L +  A + PA+AITD NNL   + F + A   GI+P
Sbjct: 3    SFIHLRLHTEFSLVDGLVKVKGLLGETEAQKMPAVAITDENNLCGFVRFYKGAMDKGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  + ++ Q  +++  +          + LL  + +GY+ +IE++S+ Y L Q +   
Sbjct: 63   ICGADVILEEQGEVEVRTR----------LTLLAMSNKGYKNVIEVISKGYQLGQHEGRP 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             +  +W++E  +E +I L+GG  G I        ++ A+K L  +  +F DR Y+ ++R 
Sbjct: 113  IVQRAWVEE-HSEDVIALSGGVQGDIGFLLSKYKTEEAKKYLDYWMSVFPDRFYLEMERT 171

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
               G + Y  + V+ LA     P+VATN+  FL +ED+EAH+  + +  S  +    R R
Sbjct: 172  ARAGEEDYIHT-VIPLASEASCPVVATNDVRFLKKEDFEAHEARVCIHDSVTLDDPRRKR 230

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CDDI 303
              + + Y K+ +EM ++F D+PEALENTVEIA+RC+  + +    LP +   +    DD 
Sbjct: 231  RYSEEQYFKSAAEMEAVFEDIPEALENTVEIAKRCNVDVLLGKYFLPDYPVPDGMTMDDF 290

Query: 304  QKEEENELRNKAVAG-LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 NEL +K +   LEV + +         Q+Y  RLDFELN+I +M F GYFLIV D
Sbjct: 291  F----NELSHKGLQDRLEVLIKKDGDRIANRRQEYLDRLDFELNIINQMGFPGYFLIVMD 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 347  FIQWAKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDIDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD+VI YV   YG + V+QIITFG++ AKA +RDV R    PYS  D+L KLIP +
Sbjct: 407  CMENRDKVIDYVARTYGRDAVSQIITFGAMAAKAVVRDVARVQGKPYSLGDKLSKLIPFE 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+ ++    E    D     ++E++  LEG+ R+   HA G+VI    L+  
Sbjct: 467  IGMTLK-KALEEEPALVEFIEGDEEAADVMEMAFSLEGVVRNFGKHAGGVVIAPTKLTDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
             P+Y +      VTQ++   +E+AGL+KFDFLGLKTLT++  +L  +     K     +D
Sbjct: 526  APLYCEEDGSGLVTQYDKNDVEEAGLVKFDFLGLKTLTVVDWALGNINALHAKEGKPPLD 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++LI  +D  TY LL    T  +FQLES GM++ ++ + P   EDIIALV+LYRPGP+ +
Sbjct: 586  IALIDLEDKSTYDLLQRAETTAVFQLESRGMKELIKKLLPSRFEDIIALVALYRPGPLGS 645

Query: 658  IVV--YNNRKNGKEKIVSIHP------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
             +V  + NRK+G+ ++   HP      LI P+L+ T G+I+YQEQVMQIAQ+L+ +SL  
Sbjct: 646  GMVDDFINRKHGRAELAFPHPDYQHDDLI-PVLEPTYGIILYQEQVMQIAQVLAKFSLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  E M +Q+  F+ GA+KN I K +  NIF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADLLRRAMGKKKPEVMAEQRLIFMEGAAKNNIDKDLGGNIFDLMEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQTAW+K HYP  F+AA ++ +M N +KI  F ++ R   + +  P+VN     F 
Sbjct: 765  ALVSYQTAWLKNHYPAPFMAAVLSADMQNTDKIVIFIEECRAMKLTLELPNVNESVYKFT 824

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V +   + Y L AIKGVG      I+EA  D PF+ + DFC RV  +K+N+RV+E+LV +
Sbjct: 825  VNEAGAVVYGLGAIKGVGEGPIEAIVEARQDGPFEHIFDFCQRV-GRKVNKRVMEALVRS 883

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFS--DKITLEKFS 944
            GA D  G +R  L  S+D   K A    KN      ++F  A E+ T +  D+I ++   
Sbjct: 884  GAFDTIGPNRATLFASIDEALKRADQNAKNEDAGMMDLFGVAVEESTENAYDEIGIQHEW 943

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                  R + E+  LG Y +GHP+D Y+  LR+  ++     +   R   + LA ++V  
Sbjct: 944  AGRQ--RLDGEKDTLGLYVTGHPIDDYEKELRRF-VRSRIVDIQPKRDTQV-LAGLIVDM 999

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  K+++G  I ++T  + +   E   FP
Sbjct: 1000 RVTKSKRGGNIAFMTLDDRSARIEVTVFP 1028


>gi|170701606|ref|ZP_02892552.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria IOP40-10]
 gi|170133489|gb|EDT01871.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria IOP40-10]
          Length = 1177

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1032 (40%), Positives = 619/1032 (59%), Gaps = 60/1032 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F Q+A   GI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNPDDRDKPS--RLLLLVKDKVGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL    ++GL+ L+G   G I  AF   + + A +    + K+F    Y+ LQR
Sbjct: 114  AELDASWLDGELSQGLLALSGAQQGDIGLAFAAGNEEAARRHAERWAKVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q   LA +  LP+VAT+ + F++++D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T D Y + + +MV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFTTDQYFRTQDDMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RL Q       +      Y +RL+FE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSKEGLEKRLEQLFPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +    K D SL
Sbjct: 529  FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKADWSL 588

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGD----- 832
            +K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+ VG+     
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLVVLPPDINQSHYRFEPVGEADGKR 828

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA 
Sbjct: 829  SRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRVVNRRTVEALIRAGAF 888

Query: 892  DCFGYSRMQLLQSL----------DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            D    +R Q+L S+                A   +    + H +    E   + DK    
Sbjct: 889  DSLNANRAQMLASVPLAMEAAEQAAANAMQAGLFDMGAESPHAHALVDEP-AWDDK---- 943

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAM 1000
                     R + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A +
Sbjct: 944  --------RRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKIGDLKEGRDKLVAGI 991

Query: 1001 VVSKQQKKTRKG 1012
            + S + + T++G
Sbjct: 992  IASLRTQMTQRG 1003


>gi|170723228|ref|YP_001750916.1| DNA polymerase III subunit alpha [Pseudomonas putida W619]
 gi|169761231|gb|ACA74547.1| DNA polymerase III, alpha subunit [Pseudomonas putida W619]
          Length = 1174

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1066 (39%), Positives = 613/1066 (57%), Gaps = 62/1066 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL+VHS +SL++G + +  +   +A    PA+AITD +N+ + ++F + A  AGI
Sbjct: 2    SVPFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCALVKFYKAAMGAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G  L +           G  P   +  I  L    +GY+ L EL+SR +   Q   
Sbjct: 62   KPICGADLWL----------AGADPEAPLSRICFLAMNPKGYRNLTELISRGWTDGQRNG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             V +   W+    +EGLI L+ G  G I  A     +  AE  L  +  +F +R YV +Q
Sbjct: 112  LVILQREWIAP-ASEGLIALSAGKEGDIGMALMAGRTTEAEALLHDWMGMFPERFYVEVQ 170

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R +R  D       V LA     PLVATN+  F+ + D++AH+  + +     +    RP
Sbjct: 171  RTNRVGDEEYVHAAVALADKVGAPLVATNDVRFIKQSDFDAHESRVCIGEGWTLDDPRRP 230

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R+  D  YLK+  EM  +FSDLP+A+ NTVEIA+RC+  +Q+    LP F       I  
Sbjct: 231  RMYSDQQYLKSADEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI-- 288

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIV 360
              ++ LR+ +  GLE RLA          Y    Q Y  RL FEL++I +M F GYFLIV
Sbjct: 289  --DDYLRHVSHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIV 346

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+
Sbjct: 347  MDFIKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDV 406

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI YV + YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP
Sbjct: 407  DFCMDGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP 466

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +    +  +A   +   R+    D     + +++ KLEG+ R    HA G+VI    L+
Sbjct: 467  FEVGMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLT 525

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ + +   K     
Sbjct: 526  DFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETINREQAKNNLPD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            V++  IP DD +TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+
Sbjct: 586  VNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPL 645

Query: 656  DNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 646  QSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLIEEVRSMKLRLDAPDVNASEFKF 825

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V D+ RI Y L AIKGVG      I+EA     PF  L DFC RVD K++N+R L++L+
Sbjct: 826  TVNDDGRIIYGLGAIKGVGEGPVEAIVEARDQGGPFKDLFDFCERVDLKRVNKRTLDALI 885

Query: 887  FAGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--- 928
             +GALD  G                +R  LL +L+   K A+   +   + H ++F    
Sbjct: 886  RSGALDRLGPHFHDEIKAYHASIDINRATLLSALEEAIKAAEQTARTADSGHVDLFGGLF 945

Query: 929  --HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
               +   +++   + + +++    R + E+  LG Y +GHP+D Y+  +R+   +   + 
Sbjct: 946  VEEDSDVYANHRKVRELTLKE---RLKGEKDTLGVYLTGHPIDEYEGEIRRFARQRIIDL 1002

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +     I  A M+++ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1003 KPSRETQTI--AGMIIAMRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046


>gi|301169460|emb|CBW29060.1| DNA polymerase III alpha subunit [Haemophilus influenzae 10810]
          Length = 1159

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1057 (39%), Positives = 617/1057 (58%), Gaps = 56/1057 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +      K    G   F     + LL    EGY+ +  L+S+ Y   +
Sbjct: 61   SGMKPIIGADVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QR 108

Query: 125  GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            G   +  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y
Sbjct: 109  GYNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFY 167

Query: 184  VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L R    +  R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +  
Sbjct: 168  LALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDD 227

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +  
Sbjct: 228  PKRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFL
Sbjct: 287  ----STEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 403  DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   ++ +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    
Sbjct: 463  IPPDPGMTLA-KAFEAEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTL 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594
            ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R V    
Sbjct: 522  ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGK 581

Query: 595  -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPG
Sbjct: 582  PRVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641

Query: 654  PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+
Sbjct: 642  PLQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYT 701

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+
Sbjct: 702  LGGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+KTH+P EF+AA MT E+DN +KI     +  +  +++MPP +N    
Sbjct: 762  AAYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVMPPDINIGKH 821

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884
             F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ES
Sbjct: 822  HFSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFES 881

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ +GA D  G  R  L ++L++  + +    K+      ++F     T  D        
Sbjct: 882  LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHED-------- 933

Query: 945  VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
            VEN+             + E+  LG Y S HP+  Y   L        ++     RG   
Sbjct: 934  VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +A ++V+ +   T+KG+R+G  T  + +   +   F
Sbjct: 994  TVAGLLVASRIAITKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|145637722|ref|ZP_01793374.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittHH]
 gi|145269071|gb|EDK09022.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittHH]
          Length = 1159

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1057 (39%), Positives = 618/1057 (58%), Gaps = 56/1057 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +      K    G   F     + LL    EGY+ +  L+S+ Y   +
Sbjct: 61   SGMKPIIGADVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QR 108

Query: 125  GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            G   +  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y
Sbjct: 109  GYNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFY 167

Query: 184  VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L R    +  R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +  
Sbjct: 168  LALSRTGRPNEERYIQAALKLAEHCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDD 227

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +  
Sbjct: 228  PKRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L  K+  GLE RLA        +      Y +RL  EL+VI +M F GYFL
Sbjct: 287  ----STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 403  DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   ++ +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    
Sbjct: 463  IPPDPGMTLA-KAFEAEPQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTL 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594
            ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R V    
Sbjct: 522  ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGK 581

Query: 595  -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPG
Sbjct: 582  PRVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641

Query: 654  PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+
Sbjct: 642  PLQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYT 701

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+
Sbjct: 702  LGGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+KTH+P EF+AA MT E+DN +KI     +  +  +++ PP +N    
Sbjct: 762  AAYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884
             F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ES
Sbjct: 822  HFSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFES 881

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ +GA D  G  R  L ++L++  + +    K+      ++F     T  D        
Sbjct: 882  LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHED-------- 933

Query: 945  VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
            VEN+             + E+  LG Y S HP+  Y   L        ++     RG   
Sbjct: 934  VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +A ++V+ +   T+KG+R+G  T  + +   +   F
Sbjct: 994  TVAGLLVASRIAITKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|148549377|ref|YP_001269479.1| DNA polymerase III subunit alpha [Pseudomonas putida F1]
 gi|148513435|gb|ABQ80295.1| DNA polymerase III, alpha subunit [Pseudomonas putida F1]
          Length = 1174

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1066 (39%), Positives = 609/1066 (57%), Gaps = 62/1066 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL+VHS +SL++G + +  +   +     PA+AITD +N+ S ++F + A  AGI
Sbjct: 2    SVPFVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G  L +           G  P   +  I  L    +GY+ L EL+SR +   Q   
Sbjct: 62   KPICGADLWL----------AGADPEAPLSRICFLAMNPKGYRNLTELISRGWTDGQRNG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             V +   W+    +EGLI L+ G  G I  A        AE  L  +  +F +R YV +Q
Sbjct: 112  LVILQREWIAP-ASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQ 170

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R +R  D       V LA     PLVATN+  F+ + D++AH+  + +     +    RP
Sbjct: 171  RTNRARDEEYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRP 230

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R   D  YLK+  EM  +FSDLP+A+ NTVEIA+RC+  +Q+    LP F       I  
Sbjct: 231  RCYSDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI-- 288

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIV 360
              ++ LR+ +  GLE RLA          Y    Q Y  RL FEL++I +M F GYFLIV
Sbjct: 289  --DDYLRHVSHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIV 346

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+
Sbjct: 347  MDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDV 406

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI YV   YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP
Sbjct: 407  DFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP 466

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +    +  +A   +   R+    D     + +++ KLEG+ R    HA G+VI    L+
Sbjct: 467  FEVGMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLT 525

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ + +   K     
Sbjct: 526  DFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +++  IP DD +TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+
Sbjct: 586  LNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPL 645

Query: 656  DNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 646  QSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKF 825

Query: 829  KV-GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V  D RI Y L AIKGVG      I+EA A   PF  L DFC R+D K++N+R L++LV
Sbjct: 826  TVNNDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALV 885

Query: 887  FAGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---- 927
             +GALD  G                +R  LL +L    K A+       + H ++F    
Sbjct: 886  RSGALDRLGPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMF 945

Query: 928  -AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
             A +   +++   + + +++    R + E+  LG Y +GHP+D Y+  +R+   +   + 
Sbjct: 946  DAADVDVYANHRKVRELTLKE---RLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDL 1002

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +     I  A M+++ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1003 KPSRETQTI--AGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046


>gi|147678555|ref|YP_001212770.1| DNA polymerase III DnaE [Pelotomaculum thermopropionicum SI]
 gi|146274652|dbj|BAF60401.1| DNA polymerase III, alpha subunit [Pelotomaculum thermopropionicum
            SI]
          Length = 1196

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/1033 (39%), Positives = 617/1033 (59%), Gaps = 30/1033 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +HS YSLL+GA  +N+ + + +  Q PA+AITD   +F  ++F +    AGI+P+
Sbjct: 15   FVHLHLHSEYSLLDGAARINDAVKRASEMQMPALAITDHGVMFGTVDFYKACKKAGIKPV 74

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +  +    M ++       +  +VLL    EGY+ L+ LVS M  +       R
Sbjct: 75   LGCEVYVAPR---SMDDRTPKIDDNLSHLVLLAENEEGYRNLLNLVS-MAFIRGFYYKPR 130

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +    L E  + GLI L+G  +G +        ++ A +    ++ +FG +  ++ LQ H
Sbjct: 131  VDKELLSE-HSRGLIALSGCIAGEVSARILAGENEKARQAAGDYRDIFGPENFFLELQDH 189

Query: 190  RGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             G+   R+   +++++     +PLV TN+  ++   D E  DVL+A+     V    R +
Sbjct: 190  -GFAEQRKVNREMLKIHKEMNIPLVVTNDVHYVRRGDAETQDVLLAIQTGKSVDDPGRMK 248

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               +  YLK+  EM  +F +L  AL NTVEIA RC+  ++     LP +   E  D    
Sbjct: 249  FQSEELYLKSPEEMNLLFGELSGALRNTVEIAGRCNVEIEFGKYYLPHYPVPEGYD---- 304

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L      G   R   G ++ G      ++RL++EL VI +M +S YFLIV DFI +
Sbjct: 305  ADTYLAELCYQG--ARRIYGELSDGV-----KKRLEYELGVIKQMGYSAYFLIVWDFIHY 357

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++N IPVGPGRGS AGS+ AY+L IT IDPL++ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 358  ARQNGIPVGPGRGSAAGSLVAYSLGITSIDPLKYGLLFERFLNPERVSMPDIDVDFCFER 417

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E+I YV  +YG +RVAQIITFG++ A+AA+RDVGRAL MPY +VDR+ KL+P +  H 
Sbjct: 418  RGEIIDYVVRRYGADRVAQIITFGTMAARAAIRDVGRALNMPYGEVDRVAKLVPME-LHM 476

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               +A+ +    RE     P V +L++ +  LEG+ RHASTHAAG+VI   PL+  +P+Y
Sbjct: 477  TIEKALNESPELRELYDQRPEVRKLIDTAAALEGMPRHASTHAAGVVITPEPLTNYLPLY 536

Query: 547  RDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
            +   +D PV TQF M  +E+ GL+K D LGL+TLT++  +L  + +  G ++D+  IP D
Sbjct: 537  K--ATDGPVTTQFAMGTVEELGLLKMDLLGLRTLTVISDALRLIKESTGEELDIERIPVD 594

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
            D +TY +L    T G+FQLESSGMR  L  ++P+  EDI+ALV+LYRPGP+ + +V  + 
Sbjct: 595  DQKTYQMLARGETAGVFQLESSGMRSILRDLRPEVFEDIVALVALYRPGPLGSGMVDDFI 654

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K+G +K   +HP ++P+LK+T GVI+YQEQVM+IA  L+G+SL EAD+LRRAMGKK  
Sbjct: 655  KNKHGFKKTKYLHPRLEPILKDTYGVILYQEQVMRIASDLAGFSLGEADLLRRAMGKKKP 714

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E +   + +FI GA++NG+    A  IF+L+  FA YGFNKSH+AAYA++SYQTA++K +
Sbjct: 715  EIIAGLRSQFIEGAARNGVDGETAGQIFDLMEYFAGYGFNKSHSAAYALVSYQTAYLKAN 774

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP++F+AA +T   DN +K+  + ++ R+  I+++PP VN     F V  N+I + LAA+
Sbjct: 775  YPLQFMAALLTSVKDNTDKVAAYIEECRRLGIEVLPPDVNESRESFTVAGNKIRFGLAAV 834

Query: 843  KGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K VG      I+ A   D PF    DFC R+D++ +N+RVLESL+  GA D  GY R QL
Sbjct: 835  KNVGMGAVDSIIRAREKDGPFSDYADFCRRLDTRVVNKRVLESLIKCGAFDSLGYRRAQL 894

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-TFSDKITLEKFSVENSSVRFENEQRVLG 960
            + ++D+    AQ  ++ R N   ++     G T S  I+  +            E+  LG
Sbjct: 895  MAAVDSGLALAQQSQRERENGQLSLLDFFGGSTDSVSISFPEVGEYPEDELLAMEKETLG 954

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             Y SGHPL  Y+  L ++      E       + + L  ++   ++  TR+G  + ++T 
Sbjct: 955  LYISGHPLSRYREALNRLTTVKTVEITDLPDNSEVVLGGLITDVKKINTRRGEVMAFLTL 1014

Query: 1021 SEPAKEYEANFFP 1033
             +     E   FP
Sbjct: 1015 EDLTGTVEVVVFP 1027


>gi|157826231|ref|YP_001493951.1| DNA polymerase III subunit alpha [Rickettsia akari str. Hartford]
 gi|157800189|gb|ABV75443.1| DNA polymerase III subunit alpha [Rickettsia akari str. Hartford]
          Length = 1185

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1088 (39%), Positives = 631/1088 (57%), Gaps = 89/1088 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL+L  I++  ++++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTLEKIVELASSNKMPAICLADRGNLFGSLEFALYAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I            K        I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNI------------KYDVDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L +   EGLI L   + G + +       + A     T +++ GDR Y  + R
Sbjct: 111  DHITFEDLIKY-QEGLIALCCYTDGIVGKCLLAREQEQAMLFARTLQEILGDRFYFEIMR 169

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +++ E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HDLPEEQFIEDSYIKIASELSIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYPDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y ++  EM  IFSDLP A++NTV +  RC F    + P+LP F  K+       E
Sbjct: 230  VSENCYFRSPHEMREIFSDLPNAIQNTVNLRERCYFAAHANPPMLPNFATKDIS-----E 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
             + +R  A  GL  RLA    ++    +       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIRKDAKEGLLARLATKFKSEHISLENQEELKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKKGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYGH RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGHNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PV+L QA+ +      A   +           +  +L+ S  LEGL+RH STHAA
Sbjct: 465  FSAVNPVTLEQAMREVPELANAAKGNGLYNLEGEAELIKLVLDTSLILEGLHRHVSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIACTDLVDIVPVYKDANSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLKQPDYLHELLKPILEETYGVVIYQEQVQRIAQILAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++ +E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAAAY 
Sbjct: 705  DLLRRAMGKKIKKEMEEHEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAAAYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TP 824
            VISYQTA++K +Y  EFL A + LE++N +KI  F Q+A+   I+I+ P++N      T 
Sbjct: 765  VISYQTAYLKANYSAEFLVACLNLELNNHDKINLFLQEAKDSGIKIIAPNINSSEGYFTT 824

Query: 825  C----------------------VDFKVGDNR------------IYYSLAAIKGVGTTTA 850
            C                      +D +  +N             I ++L AIKGV  +  
Sbjct: 825  CHFGSALCHPRVGVDPEKTSEMKMDSRFCENNIESTGYDKEERAIIFALGAIKGVTPSFG 884

Query: 851  RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + +  E  A   F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QL  S+  + 
Sbjct: 885  KLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLFLSISKLL 944

Query: 910  KYA-QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             Y+  + E+  +N+   I   +  + S  I +     + +++ F  E   +G + S HPL
Sbjct: 945  AYSTSYHEEQESNQFSLI---KVSSLSPTILVSSDYADKNTLAF-YEFESMGLFISNHPL 1000

Query: 969  DVYKPILRKMGI--KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT--FSEPA 1024
              Y+ I  ++ I    Y  +      N + LA ++   Q+K +R  +R  +VT   S+P 
Sbjct: 1001 TEYQEIFSRLNILNTAYLYNNLPEGTNRVNLAGVI---QKKDSRMSARGRFVTLVLSDPE 1057

Query: 1025 KEYEANFF 1032
              +E + F
Sbjct: 1058 NIFELSVF 1065


>gi|122879149|ref|YP_200601.6| DNA polymerase III subunit alpha [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188577178|ref|YP_001914107.1| DNA polymerase III subunit alpha [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521630|gb|ACD59575.1| DNA polymerase III, alpha subunit subfamily, putative [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 1196

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1008 (40%), Positives = 600/1008 (59%), Gaps = 62/1008 (6%)

Query: 11  FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56
           FVHL VH+ +SL +  + +               N+L +      PA+A+TD NNLF+ +
Sbjct: 6   FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVEIDMPALAVTDLNNLFALV 65

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           +F + A   GI+PI G  + I             TP  T   + LL    EGY  L  L+
Sbjct: 66  KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113

Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           +R ++     +  V I   WLQ  G   L  L G  S    R F    + +AE++L  ++
Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFSEGRADLAEQQLADWQ 171

Query: 176 KLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
           ++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+  + +
Sbjct: 172 RVFGDGLHLELTRTGRECEERFNQFALNAAGVRGLPVVASNDVRFLYASDFNAHEARVCI 231

Query: 235 AHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
           +   V+    RPR   D  YLK+  EM ++F+D+P+A++NT  +A+RC+  +++    LP
Sbjct: 232 SSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFLP 291

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            +   + + +    ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I  M F
Sbjct: 292 AYPVPDDETL----DSWIRSQSRDGLAARLEKSPIAPGKTRQDYVDRLEFELDTIINMGF 347

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
            GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R+
Sbjct: 348 PGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERV 407

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
           SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y  VD
Sbjct: 408 SMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLVD 467

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLYR 523
            + KLIPN     ++L+    + +  ++ +A P           V  L++++++LE L R
Sbjct: 468 SVAKLIPN--ILGITLKDAMGEGK--DSEMASPELIQRYQVEDDVRDLMDLARQLEDLTR 523

Query: 524 HASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
           +A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+TL
Sbjct: 524 NAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583

Query: 580 TLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQALE 633
           T++  ++  +  R  +     VD++ IP DD  TY  +   G  G +FQ ESSGMR+ L+
Sbjct: 584 TIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFALGNTGAVFQFESSGMRRLLK 643

Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
             +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQE
Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 703

Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
           QVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L+
Sbjct: 704 QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
            KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R   
Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823

Query: 814 IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871
           + + PP VN     F+    + I Y L AIKGVG      I+E      P+ +L DFC+R
Sbjct: 824 LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883

Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930
           V + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   +
Sbjct: 884 VGTTKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943

Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
               + ++ L +           +E+  LGFY SGHP D ++  +R++
Sbjct: 944 PSAPAMRLDLPESKEWPLGQLLTSERETLGFYLSGHPFDPHREEVREL 991


>gi|84623509|ref|YP_450881.1| DNA polymerase III subunit alpha [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84367449|dbj|BAE68607.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 1196

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1008 (40%), Positives = 600/1008 (59%), Gaps = 62/1008 (6%)

Query: 11  FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56
           FVHL VH+ +SL +  + +               N+L +      PA+A+TD NNLF+ +
Sbjct: 6   FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVEIDMPALAVTDLNNLFALV 65

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           +F + A   GI+PI G  + I             TP  T   + LL    EGY  L  L+
Sbjct: 66  KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113

Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           +R ++     +  V I   WLQ  G   L  L G  S    R F    + +AE++L  ++
Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFSEGRADLAEQQLADWQ 171

Query: 176 KLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
           ++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+  + +
Sbjct: 172 RVFGDGLHLELTRTGRECEERFNQFALNAAGVRGLPVVASNDVRFLYASDFNAHEARVCI 231

Query: 235 AHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
           +   V+    RPR   D  YLK+  EM ++F+D+P+A++NT  +A+RC+  +++    LP
Sbjct: 232 SSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFLP 291

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            +   + + +    ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I  M F
Sbjct: 292 AYPVPDDETL----DSWIRSQSRDGLAARLEKSPIAPGKTRQDYVDRLEFELDTIINMGF 347

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
            GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R+
Sbjct: 348 PGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERV 407

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
           SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y  VD
Sbjct: 408 SMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLVD 467

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLYR 523
            + KLIPN     ++L+    + +  ++ +A P           V  L++++++LE L R
Sbjct: 468 SVAKLIPN--ILGITLKDAMGEGK--DSEMASPELIQRYQVEDDVRDLMDLARQLEDLTR 523

Query: 524 HASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
           +A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+TL
Sbjct: 524 NAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583

Query: 580 TLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQALE 633
           T++  ++  +  R  +     VD++ IP DD  TY  +   G  G +FQ ESSGMR+ L+
Sbjct: 584 TIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFALGNTGAVFQFESSGMRRLLK 643

Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
             +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQE
Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 703

Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
           QVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L+
Sbjct: 704 QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
            KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R   
Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823

Query: 814 IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871
           + + PP VN     F+    + I Y L AIKGVG      I+E      P+ +L DFC+R
Sbjct: 824 LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883

Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930
           V + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   +
Sbjct: 884 VGTTKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943

Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
               + ++ L +           +E+  LGFY SGHP D ++  +R++
Sbjct: 944 PSAPAMRLDLPESKEWPLGQLLTSERETLGFYLSGHPFDPHREEVREL 991


>gi|319790471|ref|YP_004152104.1| DNA polymerase III, alpha subunit [Thermovibrio ammonificans HB-1]
 gi|317114973|gb|ADU97463.1| DNA polymerase III, alpha subunit [Thermovibrio ammonificans HB-1]
          Length = 1150

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/1020 (40%), Positives = 624/1020 (61%), Gaps = 28/1020 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +HS YS+L+GA+ + +++ K      PA+AITD  N+F++ E  +     GI+PI
Sbjct: 7    FVHLHLHSQYSILDGAIKVKDLVKKAKELGMPAVAITDHGNMFASYELYKACKEEGIKPI 66

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  I           G+    +   ++LL    +G + L++L S +   +      R
Sbjct: 67   IGQEFYIAKGSRFDRKKGGEGEKGSY-HLILLAKNDKGLKNLMKL-STIGFTEGFYYKPR 124

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L++  +EGLI L+    G +   +     + A +    +K+LFG+  Y+ LQ H 
Sbjct: 125  IDKEVLEKY-SEGLIALSACIQGEVPLLYLMGKEEEARRAAQWYKELFGEDFYLELQYHG 183

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
              ++ + ++ +++LA   ++ LVATN++ +L++ED+EAHDVL+ +     +S + R R  
Sbjct: 184  IPEQKKANEFLIKLAKELDIELVATNDAHYLNKEDWEAHDVLLCLQTGKKLSDEKRMRFP 243

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILPRFIEKECDDIQK 305
            + + Y+K+  EM+ +F ++P+A+ NT++IA +    L+       +LP++   E      
Sbjct: 244  SREFYVKDAQEMLEVFKEVPQAVFNTLKIAEKVEERLETFENKGYLLPKYEVPEGHTY-- 301

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              ++ LR  A  GLE R  +  I  G   Q Y +RL+ EL +I  M F GYFLIV DFI 
Sbjct: 302  --DSFLRKLAEEGLERRFKEQGITDGEKKQVYYERLNHELKIINDMGFPGYFLIVWDFIN 359

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+N IPVGPGRGS AGS+ AYA+ ITDIDP+RF+LLFERFLNP+R++MPD D+D CQD
Sbjct: 360  WAKRNGIPVGPGRGSAAGSLVAYAIGITDIDPIRFNLLFERFLNPERVTMPDIDVDICQD 419

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI+YV+ KYG ++V QIITFG+++ K  +RDVGR L +P  +VD+L KLIP+D A 
Sbjct: 420  GRDRVIQYVREKYGEDKVCQIITFGTMKTKMVIRDVGRVLGIPPKEVDKLAKLIPDD-AK 478

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             V   A+      RE    D ++ RL++I+++L+GL R    HAAG+VI    L+  +P+
Sbjct: 479  SVE-DAVERAPEIRELAEKDETIARLIKIAKRLQGLARQTGVHAAGVVIAPETLTDYIPL 537

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             +    D+  TQ++M  +E  GL+K DFLGLKTLT++ +++  + +R GV++  + +P D
Sbjct: 538  AKSKDGDI-TTQYDMGQVEALGLLKMDFLGLKTLTIIDRTIKLIKERHGVEIVPTKLPLD 596

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
            D ET+ LL +  T+G+FQLES GMR  ++ ++P   EDIIALV+LYRPGP+++ +   Y 
Sbjct: 597  DPETFKLLQSGNTVGVFQLESRGMRNLMKRLKPSVFEDIIALVALYRPGPLNSGMAESYI 656

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G+E++  I P ++P+LKET G+ IYQEQ+MQIA +L+GYSL EAD+LRRAMGKK K
Sbjct: 657  RRKHGQEEVDYIFPELEPVLKETYGLFIYQEQIMQIANILAGYSLGEADLLRRAMGKKKK 716

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E M++Q+  F+S A + G  +     +F+ +AKFA+YGFNKSH+AAY  ++Y TA++K H
Sbjct: 717  EIMEEQRSIFVSRAVERGYPREKIEKLFDDIAKFAEYGFNKSHSAAYGFLAYVTAYLKAH 776

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP E  A  M+++ D  ++I KF +D ++  I ++PP +N     F++    I + LA I
Sbjct: 777  YPKELFATMMSIDFDKTDEIVKFIKDCKENGINVLPPDINRSGAYFEIEGEAIRFGLAGI 836

Query: 843  KGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGVG   A HI E   +   F  L DFC RVD K +NR+V+E+L+ AGA D  G +R   
Sbjct: 837  KGVGEKAALHIEEVRKEGGEFKDLFDFCRRVDLKVVNRKVIEALIKAGAFDSTGINRASN 896

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN--SSVRFENEQRVL 959
            L +LD     AQ ++K+++    ++F    G     + +E   VE     V+ E E++ +
Sbjct: 897  LAALDRAMNAAQSIQKSQSKGLLSLF----GEAESIVQVEFPEVEEWPERVKLEYERQAI 952

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GFY SGHPL  +K I+  +      E      G  + LA  +   + ++T++G    W T
Sbjct: 953  GFYLSGHPLLEFKEIV-TLAFDSTAEKEEWKDGQELTLAGAITDVKLRRTQRGDL--WAT 1009


>gi|167032174|ref|YP_001667405.1| DNA polymerase III subunit alpha [Pseudomonas putida GB-1]
 gi|166858662|gb|ABY97069.1| DNA polymerase III, alpha subunit [Pseudomonas putida GB-1]
          Length = 1174

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1067 (39%), Positives = 609/1067 (57%), Gaps = 64/1067 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL+VHS +SL++G + +  +   +A    PA+AITD +N+ S ++F + A  AGI
Sbjct: 2    SVPFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G  L +           G  P   +  I  L    +GY+ L EL+SR +   Q   
Sbjct: 62   KPICGADLWL----------AGADPEAPLSRICFLAMNPQGYRNLTELISRGWTDGQRNG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             V +   W+    +EGLI L+ G  G I  A        A+  L  +  +F +R YV +Q
Sbjct: 112  LVILQREWIAP-ASEGLIALSAGKEGDIGMALLNGRDDEAQALLQDWMGMFPERFYVEVQ 170

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R +R  D       V LA     PLVATN+  F+ + D++AH+  + +     +    RP
Sbjct: 171  RTNRARDEEYVHAAVALADKFGAPLVATNDVRFIKQSDFDAHETRVCIGEGWTLDDPRRP 230

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R   D  YLK+  EM  +FSDLP+A+ NTVEIA+RC+  +Q+    LP F       I  
Sbjct: 231  RGYSDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI-- 288

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIV 360
              ++ LR+ +  GLE RLA          Y    Q Y  RL FEL++I +M F GYFLIV
Sbjct: 289  --DDYLRHVSYEGLEERLAVLWPKDTTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIV 346

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+
Sbjct: 347  MDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDV 406

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI YV   YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP
Sbjct: 407  DFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP 466

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +    +  +A   +   R+   +D     + +++ KLEG+ R    HA G+VI    L+
Sbjct: 467  FEVGMTLE-KAYEQEEILRDFLKSDEDGREIWDMALKLEGVTRGTGKHAGGVVIAPTKLT 525

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ + +   K     
Sbjct: 526  DFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKNNLPD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +++  IP DD +TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+
Sbjct: 586  LNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPL 645

Query: 656  DNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 646  QSGMVDDFINRKHGRAELAYPHADYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKF 825

Query: 829  KV-GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V  D RI Y L AIKGVG      I+EA A   PF  L DFC R+D K++N+R L++LV
Sbjct: 826  TVNNDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCDRIDLKRVNKRTLDALV 885

Query: 887  FAGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
             +GALD  G                +R  LL +L    K A+       + H ++F    
Sbjct: 886  RSGALDRLGPHFHDEIKAYQANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLF---- 941

Query: 932  GTFSDKITLEKFSVENS------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            G+  D+  ++ ++            R + E+  LG Y +GHP+D Y+  +R+   +   +
Sbjct: 942  GSMFDEAQVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIID 1001

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +     I  A M+++ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1002 LKPSRETQTI--AGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046


>gi|104783180|ref|YP_609678.1| DNA polymerase III subunit alpha [Pseudomonas entomophila L48]
 gi|95112167|emb|CAK16894.1| DNA polymerase III, alpha chain [Pseudomonas entomophila L48]
          Length = 1174

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1069 (39%), Positives = 614/1069 (57%), Gaps = 68/1069 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL+VHS +SL++G + +  +   +A    PA+AITD +N+ S ++F + A  AGI
Sbjct: 2    SVSFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G  L +   D+       + P   +  I  L    +GY+ L EL+SR +   Q   
Sbjct: 62   KPICGADLWLAGADS-------EAP---LSRICFLAMNPKGYRNLTELISRGWTDGQRNG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             V I   W+    +EGLI L+ G  G I  A        AE  L  +  +F +R YV +Q
Sbjct: 112  LVIIQRDWIAP-ASEGLIALSAGKEGDIGMALMAGRQAEAEVLLGDWMGMFPERFYVEVQ 170

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R +R  D       V LA     PLVATN+  F+ + D++AH+  + +     +    RP
Sbjct: 171  RTNRAGDEEYVHAAVALADQFGAPLVATNDVRFVKQSDFDAHETRVCIGEGWTLDDPRRP 230

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R   D  YLK+  EM  +FSDLP+A+ NTVEIA+RC+  +Q+    LP F       I  
Sbjct: 231  RGYSDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNITVQLGKYFLPDFPTPNGMGI-- 288

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIV 360
              ++ LR+ +  GLE RLA          Y    Q Y  RL FEL++I +M F GYFLIV
Sbjct: 289  --DDYLRHVSHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIV 346

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+
Sbjct: 347  MDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDV 406

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI YV   YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP
Sbjct: 407  DFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP 466

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +    +  +A   +   R+   +D     + +++ KLEG+ R    HA G+VI    L+
Sbjct: 467  FEVGMTLE-KAYEQEEILRDFLKSDEDGREIWDMALKLEGVTRGTGKHAGGVVIAPTKLT 525

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
               P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ + +   K     
Sbjct: 526  DFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQKKNNLPD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            V++  IP DD +TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+
Sbjct: 586  VNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPL 645

Query: 656  DNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 646  QSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKF 825

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V D  RI Y L AIKGVG      I+EA A   PF  L DFC R+D K++N+R L++L+
Sbjct: 826  TVNDEGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALI 885

Query: 887  FAGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
             +GALD  G                +R  LL +L    K A+       + H ++F    
Sbjct: 886  RSGALDRLGPHFHDEIKAYQANIDINRATLLSALGEAVKAAEQAAHTADSGHVDLF---- 941

Query: 932  GTFSDKITLEKFSVENS------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            G+  D+  ++ ++            R + E+  LG Y +GHP+D Y+  +R+       +
Sbjct: 942  GSMFDEADVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFA----RQ 997

Query: 986  SVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +  ++   +   +A M+++ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 998  RIVDLKPARDTQTIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046


>gi|313672076|ref|YP_004050187.1| DNA polymerase iii, alpha subunit [Calditerrivibrio nitroreducens DSM
            19672]
 gi|312938832|gb|ADR18024.1| DNA polymerase III, alpha subunit [Calditerrivibrio nitroreducens DSM
            19672]
          Length = 1154

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1035 (40%), Positives = 629/1035 (60%), Gaps = 39/1035 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            KS  FVHL +HS YSLL+GA+ +N ++DK+      A+A+TD   ++  ++F +KA A  
Sbjct: 2    KSRDFVHLHLHSQYSLLDGAIQINKMMDKLKKFGSSAVAVTDHGTMYGVVDFYKKAIANN 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIGC++ +   D+ K  N  K        ++LL    +G + L  LVS +  L+   
Sbjct: 62   IKPIIGCEVYV-APDDRKNRNYEKGEDKNY-HLILLAKNNKGLKNLQYLVS-LAQLEGFY 118

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVN 185
               RI    L +  +EGLI L+   +G I R       + A K    ++ +      Y+ 
Sbjct: 119  YKPRIDKELLAKY-SEGLIGLSACLAGEIPRYVIRGDLKEAVKSAKEYEDILSKGNFYLE 177

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ +     R    +++ +   H++P+VATN+  +L + D+ AH +LM +   T +S +D
Sbjct: 178  LQENGIPEQRIVNRELISIGKNHDIPIVATNDCHYLEKGDHVAHQILMCIQMQTTISNRD 237

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            +     D  Y+K+  EM   FS++PEA  NT++IA  C+  + +    LP +   +   +
Sbjct: 238  KLEFHSDQLYVKSPEEMWEAFSEIPEACLNTLKIAEECNVTIDLGKLHLPHYKVPKGYTV 297

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                E+   + A  GL  RLA+  I    H + Y  RL+FEL VI    ++GY+LIV DF
Sbjct: 298  ----ESYFEHLARTGLHRRLAR--IPADEHKK-YIDRLNFELKVIIEKNYAGYYLIVWDF 350

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I ++K+N IPVGPGRGSGAGS+ AYAL ITDIDP++F+LLFERFLNP+R SMPDFDIDFC
Sbjct: 351  INYSKENGIPVGPGRGSGAGSLVAYALGITDIDPIKFNLLFERFLNPERKSMPDFDIDFC 410

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            ++RRDEVI+YV +KYG++RVAQI+TFG L A+  +RDVGR L++P   VD++ K+IP  P
Sbjct: 411  KNRRDEVIKYVIDKYGNDRVAQIVTFGQLLARGVIRDVGRVLEIPLKTVDKVAKMIPEAP 470

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A+ DD    +        + LL  ++KLEGL R    HAAGIVI D+PL + V
Sbjct: 471  GMTLE-KALKDDPDLEKNIKQIEKGEELLTNARKLEGLLRQTGMHAAGIVISDKPLIEYV 529

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602
            P+ +  ++D  +TQ+    +E+ GL+KFDFLGLK LT++  ++  + +R     D++ IP
Sbjct: 530  PLCKG-QNDEVLTQYEKNTLEEIGLVKFDFLGLKNLTVIDDTVKLIRRRYNNNFDINSIP 588

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             +D +TY LL+   T G+FQLES+GM+  L+ ++P+  EDIIALV+LYRPGPI + ++  
Sbjct: 589  LNDKKTYELLSNGETTGVFQLESAGMKNLLKKLRPNKFEDIIALVALYRPGPIGSGMLDD 648

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RK+G++K+    P ++P+L++T G+I+YQEQVMQIAQ+++GYSL  AD+LRRAMGKK
Sbjct: 649  FVKRKHGEQKVTYFLPELEPILQDTYGIIVYQEQVMQIAQVIAGYSLGSADLLRRAMGKK 708

Query: 721  IKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
              EEM K KE F        I GA K G    IA  IF L+ KFA+YGFNKSH+AAYA+I
Sbjct: 709  KPEEMQKHKEIFLYGSEELKIEGAKKRGFDLKIAEEIFNLMEKFAEYGFNKSHSAAYALI 768

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQTA++K HYPVE+++  ++ E+D  EK+  F ++ ++  I+++PP++N    DF + +
Sbjct: 769  SYQTAYLKAHYPVEYMSQLLSSELDKGEKVVVFIEECKRMGIKVLPPTINKSSKDFIIDE 828

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            N I + L AIK VG +    I+ A  D  F S+ DFCSRVD + +N+RV+ESL+  G  D
Sbjct: 829  NSIRFGLGAIKNVGFSAIESIVAAREDGEFKSIYDFCSRVDLRTVNKRVVESLIKTGVFD 888

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNR----TNKHENI-FAHEKGTFSDKITLEKFSVEN 947
             FG  R  LL  LD   +  Q  +KNR    T   E +  +  +  + D   L++F  E+
Sbjct: 889  EFGKKRKVLLNVLDAAIEEGQRKQKNREIGITTVEELLGISDTEEYYPD---LDEFQ-EH 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              ++ E E  +LGFY + HPL  Y  IL  + I G  E        ++ +  ++ + +  
Sbjct: 945  DILKMEKE--LLGFYLTNHPLSSYSNILSTLTI-GSNELELMEEEKDVVVGGIIKNIKTH 1001

Query: 1008 KTRKGSRIGWVTFSE 1022
              R G ++ +VT  +
Sbjct: 1002 LARTGEKMAFVTLED 1016


>gi|239906002|ref|YP_002952741.1| DNA polymerase III alpha subunit [Desulfovibrio magneticus RS-1]
 gi|239795866|dbj|BAH74855.1| DNA polymerase III alpha subunit [Desulfovibrio magneticus RS-1]
          Length = 1154

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1040 (40%), Positives = 615/1040 (59%), Gaps = 35/1040 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL  H+ YSLL+GA+ + +++    +   PA AITD  NL  AL F   A  A ++
Sbjct: 2    PDFVHLHCHTEYSLLDGAIRIGDLVKTAKSFNSPAAAITDHGNLHGALIFYDAAKKAELK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC++ +        + + + P      +VLL     GY+ L++L +  +  +     
Sbjct: 62   PIIGCEVYVS-----PTSRRDRDPRTPRYHLVLLAQNMTGYKNLLKLATLGHT-EGMYYK 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L + G EGLI L+    G I++         A      +  LF DR Y+ +Q 
Sbjct: 116  PRVDKELLGQYG-EGLIALSACIKGEINQKLLKEGKDQARAMAKEYASLFPDRFYLEIQA 174

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++   +  ++ L+    LPLVATN+  +L  +D EAHDVL+ +  +  V    R R
Sbjct: 175  NEIPEQAIINDFLIDLSDDMGLPLVATNDCHYLRADDAEAHDVLLCIQTAACVDDVKRMR 234

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILPRFIEKECDDI 303
              T D Y ++  EM + F+ +P+A+ N+ EIA R +  L+    H P+      K  D++
Sbjct: 235  FTTQDLYYRSPDEMAAAFAHVPQAIANSCEIAERINLQLKFGDYHFPVYKSPPGKSLDEV 294

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                   + + A  GL  RL++    +G   + Y  RL+ EL+VI +M F GYFLIV DF
Sbjct: 295  -------MADLARKGLTERLSK---MQGADPKRYWDRLELELDVIKQMGFPGYFLIVQDF 344

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I WAK + IPVGPGRGS AGS+ AYAL IT++DPL + LLFERFLN +R+SMPD D+DFC
Sbjct: 345  INWAKNHGIPVGPGRGSAAGSLVAYALRITNLDPLPYDLLFERFLNIERVSMPDIDVDFC 404

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RR EVIRYV   YG E VAQI TFG+++AKA +RDVGRAL M + + DR+ KLIP D 
Sbjct: 405  ERRRHEVIRYVTEHYGEEAVAQITTFGTMKAKAVVRDVGRALGMSFGETDRIAKLIPEDL 464

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A+A +   +     D  V +L+++S++LEGL RHASTHAAG+V+ D  +++ V
Sbjct: 465  KMTID-KALAQEPELKTLMAQDGRVAKLIDVSRRLEGLARHASTHAAGVVVSDTAMTEYV 523

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIP 602
            P+Y+  +++  VTQ++MK +EKAGL+KFDFLGLKT+T++  +L  + + G +  DL  +P
Sbjct: 524  PLYKG-KNNETVTQWDMKRVEKAGLVKFDFLGLKTMTVIDDTLQIIREMGEEPPDLDTLP 582

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
            F D  TY L     T GIFQ+ES GMR+ L  ++P+C EDIIA+++LYRPGP+ + +V  
Sbjct: 583  FTDEATYELFAKGDTDGIFQVESQGMRKYLRMLKPNCFEDIIAMLALYRPGPLGSGMVEL 642

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RK+G++ +   HPL++  LK T GVI+YQEQVM+IAQ+L+ +SL   D+LRRAMGKK
Sbjct: 643  FIRRKHGEDPVEYPHPLLEETLKPTYGVIVYQEQVMKIAQVLANFSLGAGDLLRRAMGKK 702

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM KQ+  F+ G ++N I +  A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K
Sbjct: 703  NAEEMGKQRGFFVEGCAQNDIPEKKANEIFDLMEKFAEYGFNKSHSAAYALISYHTAYLK 762

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPV F+AA MT +M+N +K+ ++    R  ++ ++PP VN     F V DN+I Y LA
Sbjct: 763  AHYPVAFMAALMTSDMENQDKLLQYIAACRDNDLTLLPPDVNAGYPHFSVKDNKILYGLA 822

Query: 841  AIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            A+K VG      I+ A  +  PF SL DF SRV+ +K+ +RV+E L+  GA D FG +R 
Sbjct: 823  AVKNVGRDAVAEIVAAREEGGPFTSLLDFTSRVNMRKITKRVIEYLIKCGACDSFGCTRA 882

Query: 900  QLLQSLDNIQKYAQ--WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN--- 954
             L   LD      Q    EKN           EK   +  + L     E      E    
Sbjct: 883  GLAAGLDQAAAIGQRRAAEKNDGRLSLMTLMPEKPKPTVGLGLSCAEAELPEWHHEEMMA 942

Query: 955  -EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  LGFY + HPL  Y+  LR M +    +      G  ++LA + VS ++  T+KG 
Sbjct: 943  FEKEALGFYLTSHPLLAYERDLRAMRLTTIAQCDGMEPGVEVKLACICVSTKEIITKKGQ 1002

Query: 1014 RIGWVTFSEP-AKEYEANFF 1032
            ++ +    +    E EA  F
Sbjct: 1003 KMAFCKLEDHLGGEAEAVVF 1022


>gi|221211665|ref|ZP_03584644.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD1]
 gi|221169026|gb|EEE01494.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD1]
          Length = 1179

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1032 (40%), Positives = 619/1032 (59%), Gaps = 60/1032 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F ++A + G++
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARSKGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNPDDRDKPS--RLLLLVKNKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   WL+   +EGL+ L+G   G I  A    + + A +    + K+F    Y+ LQR
Sbjct: 114  AELDARWLEGELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + Y + + EMV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFTTEQYFRTQDEMVALFADLPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RL Q       +      Y +RL+FE   I +M F GYFLIVAD
Sbjct: 291  --DDYLIQLSKEGLEKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV++KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKDKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 529  FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  SQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+S+  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMVKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TPCVDFKVGD 832
            +K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N       P  +     
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCIMNNLVVLPPDINQSHYRFEPVAEPDGKR 828

Query: 833  NR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +R I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA 
Sbjct: 829  SRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTVEALIRAGAF 888

Query: 892  DCFGYSRMQLLQSL----------DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            D    +R QLL S+          +     A   +    + H +    E   + DK    
Sbjct: 889  DSLNANRAQLLASVPLAMEAAEQAEANALQAGLFDMGAESPHAHALVDEP-AWDDK---- 943

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAM 1000
                     R + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A +
Sbjct: 944  --------RRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKIGELKEGRDKLVAGI 991

Query: 1001 VVSKQQKKTRKG 1012
            + S + + T++G
Sbjct: 992  IASLRTQMTQRG 1003


>gi|121594197|ref|YP_986093.1| DNA polymerase III subunit alpha [Acidovorax sp. JS42]
 gi|120606277|gb|ABM42017.1| DNA polymerase III, alpha subunit [Acidovorax sp. JS42]
          Length = 1187

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/996 (41%), Positives = 587/996 (58%), Gaps = 54/996 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL++H+ +S+++G   ++ ++   A D QPA+AITD NNLF A++F ++    G++PI
Sbjct: 10  FVHLRLHTEFSVVDGTTRIDEVVKAAAKDGQPALAITDLNNLFGAIKFYKEGRGKGVKPI 69

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           +G ++ ++ +                PS +VLLV    GY  L EL++R +  +  +   
Sbjct: 70  LGAEIYLEAEA------------AGAPSRMVLLVQNRTGYLNLSELLARAWTRNIVRNQA 117

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
                WLQE+G +GLI L G  +GP+ +A        A +  L    +F  R Y+ +QR 
Sbjct: 118 LCTWEWLQELG-DGLIALAGAQAGPVGQALMKGDDAGAAQLALRLAGIFPHRFYLEVQRA 176

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            R  D    +  VQLA    LP+VAT+   F + +DYEAH+  + +A   +++   R  R
Sbjct: 177 GRPDDEAHVTAAVQLAARLALPVVATHPVQFATPDDYEAHEARVCIAEGEILANPRRVRR 236

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            T + Y K+ +EM ++F+D+P AL NTVE+A+RC+  L +  P LP F       +    
Sbjct: 237 FTREQYFKSSAEMEALFADVPSALANTVEVAKRCNVSLVLGKPQLPNFPIPGGMTM---- 292

Query: 308 ENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
           E   R+ +  GLE RL         +      Y++RL+FEL  I +M F GYFLIV DFI
Sbjct: 293 EQYFRHASHEGLEERLLHLYPDTAERDRQRPRYQERLEFELGTILKMGFPGYFLIVGDFI 352

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           QWAKKN  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 353 QWAKKNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQ 412

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP- 483
             RD VI YV++KYG E V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P 
Sbjct: 413 ANRDRVIDYVKDKYGKEAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPG 472

Query: 484 -----AHPVSLQAIADDSRFR--------EARLADPSVDRLLEISQKLEGLYRHASTHAA 530
                A+P   +   D + +         E    +  V  ++E++QKLEG+ R+   HA 
Sbjct: 473 QTYTLAYPPEPKKEGDKNNYALELEPILYERVRKEEDVRTIIEMAQKLEGMTRNIGMHAG 532

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           G++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F+ 
Sbjct: 533 GVLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIM 592

Query: 591 QRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
           QR    +      IP DD  TY L +   T  +FQ ES GM+  L+  +P  +ED+IAL 
Sbjct: 593 QRHKGQENFAFENIPLDDAATYKLFSDGKTEAVFQFESRGMQGMLKEARPSRLEDLIALN 652

Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
           +LYRPGP+D I  + NRK+GKE +   HPL++P+L ET G+++YQEQVMQ AQ+L GYSL
Sbjct: 653 ALYRPGPMDLIPSFVNRKHGKEVVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSL 712

Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             AD+LRRAMGKK  EEM + +  F  GA++ GIS+  A  +F+L+ KFA YGFNKSHAA
Sbjct: 713 GGADMLRRAMGKKKAEEMAEHRAIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAA 772

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCV 826
           AY++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA + F +   PP +N    
Sbjct: 773 AYSLLAYHTGWLKVHYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGMTFEPPDINRGNY 832

Query: 827 DFK-VGDNRIYYSLAAIKGVGTTTARHIMEA----------SADKPFDSLEDFCSRVDSK 875
            F+ V D  I Y L A+KG G      I+ A          +   PF SL DFC RVD  
Sbjct: 833 RFEPVTDKVIRYGLGAVKGTGQQAIEAIIAAREGQGVGPQGATRGPFKSLFDFCVRVDRT 892

Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY--AQWVEKNRTNKHENIFAHEKGT 933
           ++N+R +E+L+ AGA D    +R  L+ SLD   ++  AQ    N+    + +     G+
Sbjct: 893 RVNKRTVEALIKAGAFDALQLNRAALVASLDRAFEFANAQIANANQGGLFDMMGDDAIGS 952

Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            + +  L          R   E+  +GFY SGH  D
Sbjct: 953 STQEPDLVDVMPWGIKERLMQEKTAVGFYLSGHLFD 988


>gi|258405519|ref|YP_003198261.1| DNA polymerase III, alpha subunit [Desulfohalobium retbaense DSM
            5692]
 gi|257797746|gb|ACV68683.1| DNA polymerase III, alpha subunit [Desulfohalobium retbaense DSM
            5692]
          Length = 1159

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1042 (40%), Positives = 618/1042 (59%), Gaps = 36/1042 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL  H+ YSLL+GA+ + ++  +       ++AI+D  NLF AL+F   A   G++PI
Sbjct: 4    FTHLHCHTEYSLLDGAIRIGDLCQQAVDFGFSSVAISDHGNLFGALDFYLTAKKFGVKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +   D  + T        +   +VLL     GY  L+ LVSR +L +      R
Sbjct: 64   IGCEVYVAPGD--RRTKHTDKDIRSGYHLVLLAQNLTGYYNLVRLVSRGWL-EGFHYKPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    L +   EGLI L+    G +            +     +  LF  R Y+ LQ + 
Sbjct: 121  VDKELLSQW-NEGLIALSACLKGEVPYGLRHEGMSRGKALAEEYSALFPGRFYLELQANG 179

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
              ++     Q+++LA T +LPLVATN+  +LS  D EAHD+L+ +  +     KDR R  
Sbjct: 180  IPEQVTLNEQLLELAETTKLPLVATNDCHYLSYNDVEAHDILLCIQTNAQYYAKDRMRFD 239

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y +   EM   F+  P+ALEN   IAR C+  L +     P +   +   +++E  
Sbjct: 240  TQELYYRPPEEMEQAFAHCPQALENVGAIARNCNVELDLGQNYFPVYDVPQGRTLEEEFI 299

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              +R     GL  RLA+  +      + Y QRLD EL+VI    F  YFLIV DFI WAK
Sbjct: 300  RLVRE----GLRTRLAK--LPYTVDEEVYWQRLDTELDVICAKGFPAYFLIVQDFINWAK 353

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  IPVGPGRGS AGS+ AY L IT++DPLR++LLFERFLN +R SMPD D+DFC +RR+
Sbjct: 354  EQGIPVGPGRGSAAGSLVAYCLGITNLDPLRYNLLFERFLNVERASMPDIDVDFCYNRRE 413

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVIRYV  KYG E VAQI TFG+++AKA +RDVGRAL + +++ D++ KL+P+D      
Sbjct: 414  EVIRYVTAKYGKESVAQITTFGTMKAKAVVRDVGRALGLSFAETDKIAKLVPDD------ 467

Query: 489  LQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGD-RPLSQL 542
            L+   D +  +E  LA     D +V +L+++S++LEGL RHASTHAAGIVI D  PL   
Sbjct: 468  LKMTIDKALEQEPDLAALAENDETVAKLIDVSRRLEGLARHASTHAAGIVISDSHPLEDH 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLI 601
            +P+Y   + ++ VTQF+MK +EK GLIKFDFLGLKTLT++  +L    Q G  V D+  +
Sbjct: 528  LPLYLGKKGEV-VTQFDMKKVEKVGLIKFDFLGLKTLTVIADTLHLAQQAGKSVPDIDTL 586

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P +D  T+ LL    T G+FQLESSGMR  ++ +QP   EDIIAL++LYRPGP+++ +V 
Sbjct: 587  PLEDEATFALLCRTETDGVFQLESSGMRNVIKDLQPTSFEDIIALLALYRPGPLESGMVT 646

Query: 662  N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +   RK+G+  +   HPL++P+L+ T GVI+YQEQVM+IA  ++ YSL + D+LRRAMGK
Sbjct: 647  DFIRRKHGEIPVEYPHPLLEPILEATYGVILYQEQVMRIASDMANYSLGDGDILRRAMGK 706

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    M +Q+ +F++GA +N I +  A  IF+L+ KFA YGFNKSH+AAYA++SYQTA++
Sbjct: 707  KDPSVMAEQRTKFVNGAKENEIDEATATYIFDLMEKFAGYGFNKSHSAAYALVSYQTAYL 766

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYPVEF+AA +T E+ N +K+       R+  I+++PP VN     F V + ++ + L
Sbjct: 767  KAHYPVEFMAALITSEVSNTDKVIAHINACREMGIEVLPPDVNHSERHFTVENEKLRFGL 826

Query: 840  AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            + +K VG      ++ E   + P+ SL DFC RV S+K+ +RVLESL+ +GA+D  G SR
Sbjct: 827  SGVKNVGGGAIEALVAERRRNGPYASLLDFCKRVGSRKVTKRVLESLIKSGAMDSLGCSR 886

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-------R 951
              LL +LD +   AQ   ++++    ++ A      S  ++     +E + V       R
Sbjct: 887  ASLLAALDKVVSTAQRQSRDKSRGQLSLMAMMGEEDSCVLSGIGMDIEEAQVEEWDDEKR 946

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
             + E+  LGF+ SGHPL  ++  L++  +   ++         +R A +V   ++  T+K
Sbjct: 947  LQYEKEALGFFLSGHPLLRFREELKRQRLLSLQDCGELGGDTEVRTAVLVTGVKEHVTKK 1006

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G R+ +    +     E   FP
Sbjct: 1007 GGRMAFCQIEDLTGTGEMTMFP 1028


>gi|206560768|ref|YP_002231533.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia J2315]
 gi|198036810|emb|CAR52710.1| putative DNA polymerase III alpha subunit [Burkholderia cenocepacia
            J2315]
          Length = 1177

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1028 (40%), Positives = 616/1028 (59%), Gaps = 52/1028 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + +++I+   AAD Q A+A+TD  N F  + F Q+A   GI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC + I   D+    ++          ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGCDVWIANPDDRDKPSR----------LLLLVKDKVGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL     +GL+ L+G   G I  A    + + A +    + ++F    Y+ LQR
Sbjct: 114  AELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T D Y + + +M ++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFTTDQYFRTQDDMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RLAQ       +      Y +RL+FE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSKEGLETRLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +    K D SL
Sbjct: 529  FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSL 588

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L A+KG G      I+ A  +K F  L DFC R+D + +NRR +E+L+ AGA 
Sbjct: 829  SRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH------ENIFAHEKGTFSDKITLEKFSV 945
            D    +R QL+ S+    + A   E N           E+  AH          L     
Sbjct: 889  DSLNPNRAQLIASVPLAMEAADQAEANAMQAGLFDMGAESPHAH---------ALVDEPA 939

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004
             +   R + E+  LGFY SGH  D Y+  +R+       + V  ++ G +  +A ++ S 
Sbjct: 940  WDDKRRLQEEKAALGFYLSGHLFDAYRDEVRRF----VRQKVGDLKEGRDKLVAGIIASL 995

Query: 1005 QQKKTRKG 1012
            + + T++G
Sbjct: 996  RTQMTQRG 1003


>gi|222111091|ref|YP_002553355.1| DNA polymerase iii subunit alpha [Acidovorax ebreus TPSY]
 gi|221730535|gb|ACM33355.1| DNA polymerase III, alpha subunit [Acidovorax ebreus TPSY]
          Length = 1179

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/996 (41%), Positives = 587/996 (58%), Gaps = 54/996 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL++H+ +S+++G   ++ ++   A D QPA+AITD NNLF A++F ++    G++PI
Sbjct: 2   FVHLRLHTEFSVVDGTTRIDEVVKAAAKDGQPALAITDLNNLFGAIKFYKEGRGKGVKPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           +G ++ ++ +                PS +VLLV    GY  L EL++R +  +  +   
Sbjct: 62  LGAEIYLEGEA------------AGAPSRMVLLVQNRTGYLNLSELLARAWTRNIVRNQA 109

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
                WLQE+G +GLI L G  +GP+ +A        A +  L    +F  R Y+ +QR 
Sbjct: 110 LCTWEWLQELG-DGLIALAGAQAGPVGQALMKGDDAGAAQLALRLAGIFPHRFYLEVQRA 168

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            R  D    +  VQLA    LP+VAT+   F + +DYEAH+  + +A   +++   R  R
Sbjct: 169 GRPDDEAHVTAAVQLAARLALPVVATHPVQFATPDDYEAHEARVCIAEGEILANPRRVRR 228

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            T + Y K+ +EM ++F+D+P AL NTVE+A+RC+  L +  P LP F       +    
Sbjct: 229 FTREQYFKSSAEMEALFADVPSALANTVEVAKRCNVSLVLGKPQLPNFPIPGGMTM---- 284

Query: 308 ENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
           E   R+ +  GLE RL         +      Y++RL+FEL  I +M F GYFLIV DFI
Sbjct: 285 EQYFRHASHEGLEERLLHLYPDTAERDRQRPRYQERLEFELGTILKMGFPGYFLIVGDFI 344

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           QWAKKN  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 345 QWAKKNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQ 404

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP- 483
             RD VI YV++KYG E V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P 
Sbjct: 405 ANRDRVIDYVKDKYGKEAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPG 464

Query: 484 -----AHPVSLQAIADDSRFR--------EARLADPSVDRLLEISQKLEGLYRHASTHAA 530
                A+P   +   D + +         E    +  V  ++E++QKLEG+ R+   HA 
Sbjct: 465 QTYTLAYPPEPKKEGDKNNYALELEPILYERVRKEEDVRTIIEMAQKLEGMTRNIGMHAG 524

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           G++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F+ 
Sbjct: 525 GVLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIM 584

Query: 591 QRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
           QR    +      IP DD  TY L +   T  +FQ ES GM+  L+  +P  +ED+IAL 
Sbjct: 585 QRHKGQENFAFENIPLDDAATYKLFSDGKTEAVFQFESRGMQGMLKEARPSRLEDLIALN 644

Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
           +LYRPGP+D I  + NRK+GKE +   HPL++P+L ET G+++YQEQVMQ AQ+L GYSL
Sbjct: 645 ALYRPGPMDLIPSFVNRKHGKEVVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSL 704

Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             AD+LRRAMGKK  EEM + +  F  GA++ GIS+  A  +F+L+ KFA YGFNKSHAA
Sbjct: 705 GGADMLRRAMGKKKAEEMAEHRAIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAA 764

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCV 826
           AY++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA + F +   PP +N    
Sbjct: 765 AYSLLAYHTGWLKVHYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGMTFEPPDINRGNY 824

Query: 827 DFK-VGDNRIYYSLAAIKGVGTTTARHIMEA----------SADKPFDSLEDFCSRVDSK 875
            F+ V D  I Y L A+KG G      I+ A          +   PF SL DFC RVD  
Sbjct: 825 RFEPVTDKVIRYGLGAVKGTGQQAIEAIIAAREGQGVGPQGATRGPFKSLFDFCVRVDRT 884

Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY--AQWVEKNRTNKHENIFAHEKGT 933
           ++N+R +E+L+ AGA D    +R  L+ SLD   ++  AQ    N+    + +     G+
Sbjct: 885 RVNKRTVEALIKAGAFDALQLNRAALVASLDRAFEFANAQIANANQGGLFDMMGDDAIGS 944

Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            + +  L          R   E+  +GFY SGH  D
Sbjct: 945 STQEPDLVDVMPWGIKERLMQEKTAVGFYLSGHLFD 980


>gi|145634848|ref|ZP_01790556.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittAA]
 gi|229844610|ref|ZP_04464749.1| DNA polymerase III subunit alpha [Haemophilus influenzae 6P18H1]
 gi|145268014|gb|EDK08010.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittAA]
 gi|229812324|gb|EEP48014.1| DNA polymerase III subunit alpha [Haemophilus influenzae 6P18H1]
          Length = 1159

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1057 (39%), Positives = 618/1057 (58%), Gaps = 56/1057 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +      K    G   F     + LL    EGY+ +  L+S+ Y   +
Sbjct: 61   SGMKPIIGADVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QR 108

Query: 125  GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            G   +  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y
Sbjct: 109  GYNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFY 167

Query: 184  VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L R    +  R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +  
Sbjct: 168  LALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDD 227

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +  
Sbjct: 228  PKRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L  K+  GLE RLA        +      Y +RL  EL+VI +M F GYFL
Sbjct: 287  ----STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 403  DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   ++ +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    
Sbjct: 463  IPPDPGMTLA-KAFEAEPQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTL 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594
            ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R V    
Sbjct: 522  ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGK 581

Query: 595  -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +VD++ IP DD +++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPG
Sbjct: 582  PRVDIAAIPLDDPKSFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641

Query: 654  PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+
Sbjct: 642  PLQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYT 701

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+
Sbjct: 702  LGGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+KTH+P EF+AA MT E+DN +KI     +  +  +++ PP +N    
Sbjct: 762  AAYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884
             F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ES
Sbjct: 822  HFSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFES 881

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ +GA D  G  R  L ++L++  + +    K+      ++F     T  D        
Sbjct: 882  LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHED-------- 933

Query: 945  VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
            VEN+             + E+  LG Y S HP+  Y   L        ++     RG   
Sbjct: 934  VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +A ++V+ +   T+KG+R+G  T  + +   +   F
Sbjct: 994  TVAGLLVASRIAITKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|256827913|ref|YP_003156641.1| DNA polymerase III, alpha subunit [Desulfomicrobium baculatum DSM
            4028]
 gi|256577089|gb|ACU88225.1| DNA polymerase III, alpha subunit [Desulfomicrobium baculatum DSM
            4028]
          Length = 1151

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1046 (40%), Positives = 617/1046 (58%), Gaps = 47/1046 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL  HS YSLL+GA+ L ++  +       + AITD  NLF ++ F  +A   GI+P
Sbjct: 3    GFTHLHCHSEYSLLDGAIRLKDLCARAVDFGFSSAAITDHGNLFGSVPFYLEAKKHGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ I   D  +  N+ +        +VLL     GY  L+++VS  +L +      
Sbjct: 63   IIGSEVYI-ADDMFERENKKRF------HLVLLAQNLIGYHNLVKIVSAGFL-EGFYYKP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+   +L+   +EGLI L+    G +  A    +   A  +   + ++F DR Y+ LQ  
Sbjct: 115  RVDKKYLR-AHSEGLICLSACLQGEVPYALRHGTFDSALLKAREYMEIFPDRFYLELQS- 172

Query: 190  RGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
               +  +E +VV     +LA    LPLVATN+  +L ++DYEAHD+L+ V    + S+K 
Sbjct: 173  ---NGLKEQEVVNDRLMELANETGLPLVATNDCHYLGKDDYEAHDILLCVGTGKIASEKQ 229

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R +  T + Y K   EM + F+  PEA+EN   IA  C   L++     P +   E   +
Sbjct: 230  RLKFDTNEFYYKAPEEMEAAFAHCPEAVENAGRIADMCEVELKLKQHFFPVYDVPEGVTL 289

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                + E R  +  GL+ R+A  A+        YR+RL+ EL VI    F  YFLIV DF
Sbjct: 290  ----DQEFRRLSEEGLKERIA--ALPYEVDESVYRERLELELGVIIEKGFPAYFLIVQDF 343

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I WAK  NIPVGPGRGS AGS+ +YAL ITD+DP+R++L FERFLN +R SMPD D+DFC
Sbjct: 344  INWAKSKNIPVGPGRGSAAGSLVSYALRITDLDPIRYALFFERFLNVERASMPDIDVDFC 403

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RRDEVI+YV  KYG + VAQI+ FG+++AK A+RDV RAL +     DR+ KLIP+D 
Sbjct: 404  YNRRDEVIKYVSEKYGADHVAQIVAFGTMKAKGAIRDVARALDVSLKDADRIAKLIPDDL 463

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A+ ++   R    +DP   +L +++++LEGL RH+S HAAGIVI  +P+ + +
Sbjct: 464  KMTLT-KALDEEPELRNLIDSDPQYKKLYDVARRLEGLARHSSIHAAGIVISQKPMVEYL 522

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-LSLIP 602
            P+++    ++ VTQ +MK +E  GLIKFDFLGLKTLT++  +L  + +    V  L  +P
Sbjct: 523  PLHKGKNGEV-VTQLDMKKVELIGLIKFDFLGLKTLTVIDDALKLIRKNNKPVPILEKLP 581

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD +T+ LL    T G+FQLES GMR+ L G++P C EDIIAL++LYRPGP+++ +V  
Sbjct: 582  LDDPQTFELLCRGETDGVFQLESDGMRRVLRGLKPSCFEDIIALLALYRPGPLESGMVDD 641

Query: 661  YNNRKNGKEKIV----SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +  RK+G  K+      + P++ P+L++T GVI+YQEQVM+IA  L+ YSL E D LRRA
Sbjct: 642  FIGRKHGLRKVEYEFEELAPVVHPILEDTYGVILYQEQVMKIASDLAKYSLGEGDNLRRA 701

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK   EM KQ+ RF+ GA +N IS+  A  IF+L+ KFA YGFNKSH+AAYAVISYQT
Sbjct: 702  MGKKDPAEMAKQRVRFLDGARENNISQEAAEYIFDLMEKFAGYGFNKSHSAAYAVISYQT 761

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K HYP EF+AA +T E+ N +KI       R  +I+++PP VN    +F V    I 
Sbjct: 762  AYVKAHYPAEFMAAIITSEVSNTDKILAHVSACRDMDIEVLPPDVNRSFNEFTVEGESIR 821

Query: 837  YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y L+ IKGVG      I E       F SL DFC RV+ +K+N+RVL+SL+ +GA+D FG
Sbjct: 822  YGLSGIKGVGEGAVESIEEEREKGGDFTSLLDFCQRVNLRKVNKRVLDSLIKSGAMDSFG 881

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---------GTFSDKITLEKFSVE 946
             SR  LL++LD +Q  AQ   K +T+   +     +         G   D+  L +F  +
Sbjct: 882  CSRRALLENLDKVQAMAQKRAKRKTSGQLSFMGMVEENTCNLTGLGIEDDEAALPEFG-D 940

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +   R E E    GF+  GHPL  ++  +R++G     +       + +++  +V S + 
Sbjct: 941  DEKCRMEKE--AFGFFLIGHPLQPFRQEIRRLGYPSLAQCADLTEKSPVQVPVLVTSMKT 998

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+KG R+ +    + +   EA  F
Sbjct: 999  INTKKGDRMAFCGIEDLSGSGEAIVF 1024


>gi|319760423|ref|YP_004124361.1| DNA polymerase III subunit alpha [Candidatus Blochmannia vafer str.
           BVAF]
 gi|318039137|gb|ADV33687.1| DNA polymerase III subunit alpha [Candidatus Blochmannia vafer str.
           BVAF]
          Length = 1169

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/988 (40%), Positives = 603/988 (61%), Gaps = 42/988 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P+F+HL   S YS+++    +N +L+K      PA+A+TD  NLF  ++F   +   GI+
Sbjct: 4   PNFIHLHTRSDYSMIDSIAKVNELLEKAKLFNMPALALTDFTNLFGLIKFHNYSYELGIK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PI G   D  +QD    ++     F     I  LV  ++GYQ LI+L+S+ Y        
Sbjct: 64  PITGS--DFCIQD----SSSDNIDFH---EITCLVINSQGYQNLIQLISKAYKYKSNTSF 114

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I +SWLQE   +GLI+L+GG +G I +    +     ++RL  +   F +R Y+ L R
Sbjct: 115 PVIKMSWLQEY-NKGLILLSGGRNGDIGQYLLKDKKNKIDERLSFYNNYFPNRYYIELIR 173

Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRP 246
             R Y+       ++L+    LP+VATN+  F++E+D+ AH++ +A+    VV + +   
Sbjct: 174 TGREYEELYLQLAIELSKIKGLPVVATNDIRFINEKDFLAHEIRVAIHDGVVVDKIQQLN 233

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
           + +   ++KN  +M  +F D+PE+L NTVEIA+RC+ I+ ++   LP+F           
Sbjct: 234 KYSKQQFMKNAQDMCLLFKDVPESLTNTVEIAQRCNCIINLNGSFLPKFPTGSI-----S 288

Query: 307 EENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            EN L   A  GLE RL         +  + + Y +RL  EL+VI +M F GYFLIV +F
Sbjct: 289 IENFLIKFAQKGLEKRLLHLFPDDKKRYINRKPYDERLSHELHVIIQMGFPGYFLIVMEF 348

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           IQWAK N IPVGPGRGSGA S+ AY LTIT++DP++F LLFERFLNP+R+SMPD DIDFC
Sbjct: 349 IQWAKNNKIPVGPGRGSGASSLVAYVLTITELDPIKFDLLFERFLNPERISMPDLDIDFC 408

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RD VI +V   YG   VAQIITFG++ AKA +RDVGRAL  PY+ ++ + KLIP+  
Sbjct: 409 MEHRDLVIDHVVKTYGSCAVAQIITFGTMAAKAVIRDVGRALGYPYTFINSIAKLIPSKI 468

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              +S Q+ A DS+ +     +  + +L+++S +LEGL R+ S HA G+VI    ++   
Sbjct: 469 GITLS-QSYATDSQLKLMYDNNEEIKKLIDLSLQLEGLIRNVSKHAGGVVIAPSKITDFS 527

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
           P+Y D     P+TQF+   IE+ GLIKFDFLGL+TLT++ +SL  +    +K     +D+
Sbjct: 528 PLYYDSDHTHPMTQFDKNDIERIGLIKFDFLGLRTLTVIDRSLKMINNLRLKSCLSIIDI 587

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
           + I  +D E++ +L T  T GIFQLES G++  ++ ++PDC ED+IAL++L+RPGP+ + 
Sbjct: 588 NQISLNDQESFDVLQTSKTTGIFQLESRGIKALIKRLKPDCFEDLIALIALFRPGPLQSG 647

Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           +V N  NRK+G E I        H  + P+LK T G+I+YQEQVMQIAQ+L+GY+  +AD
Sbjct: 648 MVDNFINRKHGYEAIYYPDSQWEHKSLRPVLKSTYGIILYQEQVMQIAQVLAGYTPGKAD 707

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           +LRRA+GKK  E+M KQ+  FI GA +NGI K ++  IF+L+ KFA YGFNKSH+ AYA+
Sbjct: 708 ILRRAIGKKKPEDMAKQRSIFIDGAVRNGIDKILSKKIFDLMEKFAGYGFNKSHSVAYAL 767

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
           +SYQT W+KTHYP EF+A+++  +MDN+ +      + ++  ++I PP +N     F V 
Sbjct: 768 LSYQTLWLKTHYPAEFMASTLNSDMDNLNRTINLLNECKRIGLKIHPPDINNSQYYFCVN 827

Query: 832 DNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             + I Y + AIKG+G T+   I+++ +    F  L DFC R+++ K+N R++E L+F+G
Sbjct: 828 KKKEIVYGIGAIKGIGKTSIDEIVKSRNCHGEFKGLFDFCVRIENLKINFRMVEKLIFSG 887

Query: 890 ALDCFGYSRMQLLQSL-DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE-- 946
           A D F   R +LL +L D I    Q++ K + +K  ++F     T   +  +   S    
Sbjct: 888 AFDSFKTHRSKLLSTLKDTINNATQYINK-KNSKQTDMFETYINTQVTEYNVLNMSCMTS 946

Query: 947 ---NSSVRFENEQRVLGFYFSGHPLDVY 971
              N+ +  E E+  +G Y + HP+D Y
Sbjct: 947 TKWNNQILLEKEKETVGLYLTNHPVDQY 974


>gi|325923963|ref|ZP_08185552.1| DNA polymerase III, alpha subunit [Xanthomonas gardneri ATCC 19865]
 gi|325545546|gb|EGD16811.1| DNA polymerase III, alpha subunit [Xanthomonas gardneri ATCC 19865]
          Length = 1196

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/1009 (40%), Positives = 601/1009 (59%), Gaps = 64/1009 (6%)

Query: 11  FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56
           FVHL VH+ +SL +  + +               N+L +      PA+A+TD NNLF+ +
Sbjct: 6   FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNLFALV 65

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           +F + A   GI+PI G  + I             TP  T   + LL    EGY  L  L+
Sbjct: 66  KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113

Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           +R ++     +  V I   WLQ  G   L  L G  S    R F    + +AE++L  ++
Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQS-GHVNLFALAGRDS-LAGRLFGEGRADLAEQQLADWQ 171

Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           ++FGD L++ L R    G +R+ +   +  A    LP+VA+N+  FL   D+ AH+  + 
Sbjct: 172 RVFGDGLHLELTRTGREGEERFNQF-ALHAAGVRGLPVVASNDVRFLYASDFNAHEARVC 230

Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
           ++   V+    RPR   D  YLK+  EM ++F+D+P+A++NT  +A+RC+  +++    L
Sbjct: 231 ISSGRVLDDPKRPREYSDQQYLKSADEMAALFADVPDAIDNTHALAQRCNIEMRLGTYFL 290

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           P +   E + +    ++ +R++A  GL  RL +  IA G   QDY  RL+FEL+ I +M 
Sbjct: 291 PAYPVPEDETL----DSWIRSQARDGLAARLEKSPIASGKTRQDYVDRLEFELDTIIKMG 346

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R
Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 406

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
           +SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y  V
Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLV 466

Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLY 522
           D + KLIPN     ++L+    + +  ++ +A P           V  L++++++LE L 
Sbjct: 467 DSVAKLIPN--ILGITLKDAMGEGK--DSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRD----VRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
           R+A  HA G+VI   PLS+  P++ +     R    VTQF+   +E  GL+KFDFLGL+T
Sbjct: 523 RNAGKHAGGVVIAPEPLSEFCPLFAEHDEGGRGKNQVTQFDKDDVEAVGLVKFDFLGLRT 582

Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632
           LT++  ++  +  R  +     VD++ +P DD  TY  +   G  G +FQ ESSGMR+ L
Sbjct: 583 LTIIDWAVKAINVRHARAGIDPVDITTLPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642

Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++I+   P  + +LK+T G+++YQ
Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIIYPDPRTEAILKDTYGIMVYQ 702

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAHKADEIFDL 762

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870
            + + PP VN     F+    + I Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 823 GLTVKPPRVNESAYMFEAATPDTIQYGLGAIKGVGQGACEAIIEERQRGGPYTTLLDFCT 882

Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929
           RV + KLNRR LE++V AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883 RVGTAKLNRRTLEAMVNAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
           +    + ++ L +            E+  LGFY SGHP D ++  +R++
Sbjct: 943 DPSAPALRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVREL 991


>gi|192360327|ref|YP_001981623.1| DNA polymerase III subunit alpha [Cellvibrio japonicus Ueda107]
 gi|190686492|gb|ACE84170.1| DNA polymerase III, alpha subunit [Cellvibrio japonicus Ueda107]
          Length = 1177

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/1060 (38%), Positives = 615/1060 (58%), Gaps = 53/1060 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + +FVHL++H+ +SL +  + +  ++ ++A    PA AITD  N +  ++F + A   GI
Sbjct: 3    AANFVHLRLHTEFSLSDSLVRIKPLIKRVAELNMPACAITDQTNFYGLIKFYKAAQGTGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G         +  M +      PT+  + LL    +GY+ +IEL+SR +   Q + 
Sbjct: 63   KPIAGS--------DFLMASHETDGKPTL--LTLLAMNNQGYKNIIELISRAWRSGQQQG 112

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   W+ E  +EG+I L+GG  G +  A        A++ L  + + F +R Y+ LQ
Sbjct: 113  IAYIQREWISEY-SEGVIALSGGKFGDVGMALLGGRQAQAQELLQGWMRDFPNRFYLELQ 171

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R  D       V LA   + P+VATN+  FL   ++E H+  + +     +    R 
Sbjct: 172  RTGRENDENYLHAAVDLAAQMQCPVVATNDVRFLKTSEFEVHEARVCIGEGRTLDDPRRE 231

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R   D  YL++  EMV +FSD+PEA+ N+VEIA+RC+  +Q+    LP +   E      
Sbjct: 232  RRYSDQQYLRSAEEMVELFSDIPEAIANSVEIAKRCTITIQMGKYFLPEYPVPEG----L 287

Query: 306  EEENELRNKAVAGLEVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             E    R  ++ GL+ RL +             + Y +RL+FEL++I +M F GYFLIV 
Sbjct: 288  TEAEFFRKISLEGLDWRLEKILDKSLPDYAERRKVYEERLNFELDIIIQMGFPGYFLIVM 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQWAK ++IPVGPGRGSGAGS+ AYAL ITD+DPL++ LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFIQWAKDHDIPVGPGRGSGAGSLVAYALKITDLDPLQYDLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D RD+VI YV   YG + V+QIITFG++ AKA +RDV R     Y   D+L K+IP 
Sbjct: 408  FCMDNRDKVIAYVAENYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPP 467

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   ++ QA+ ++ + +E    D     + E++ +LEGL R+   HA G+VI    L+ 
Sbjct: 468  TPGMTLA-QALEEEPQLKEFLAQDGDAQEIWEMAVQLEGLTRNVGKHAGGVVIAPTKLTD 526

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
              P++ D      VTQF+   +E+AGL+KFDFLGL+TLT++  +   + ++  K     +
Sbjct: 527  FAPLFCDETGSGLVTQFDKGDVEEAGLVKFDFLGLRTLTIIDWARIMIDKQRRKRGESPL 586

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +T+ LL    T  +FQLES GM+  ++ +QPD IED+IALV+L+RPGP++
Sbjct: 587  DINAIPLDDAKTFGLLKRAETTAVFQLESRGMKDLIKRLQPDNIEDLIALVALFRPGPLE 646

Query: 657  NIVV--YNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + NRK+G+ ++        H  + P+L+ T GVI+YQEQVMQIAQ+L+GY+L  
Sbjct: 647  SGMVDDFINRKHGRAEVAYPDAKFQHASLKPVLEPTYGVIVYQEQVMQIAQVLAGYTLGG 706

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA K G+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 707  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKQGVDPDLAIKIFDLVEKFAGYGFNKSHSAAY 766

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQTAW+K HYP  F+AA+M+ +MD  +K+  F ++ R   ++++PP VN+    F 
Sbjct: 767  AIVSYQTAWLKAHYPAHFMAATMSSDMDKTDKVVTFIEECRTMKLKLLPPDVNSGEFHFT 826

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D  RI Y L AIKG+G      I+ A  D  PF  L DFC+RVD++K+N+R LE+++ 
Sbjct: 827  VDDAGRIIYGLGAIKGLGEGPVESIIAARNDGGPFKDLFDFCARVDARKVNKRALEAIIR 886

Query: 888  AGALDCFG-----------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKG 932
            +GA D  G           + R  +  ++    K A+    N      ++F    A E+ 
Sbjct: 887  SGAADSLGPTYDTPEYNIDHDRAVMFSAMAEAVKTAEQATANSNAGMMDLFGAVMASEES 946

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
            T        +        R   E+  LG Y +GHP+D Y+  L    +     ++   +G
Sbjct: 947  TNDVYADFRRVRTWTIKERLHAEKETLGLYLTGHPIDEYESELSHF-VSSRIANLKPEKG 1005

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            N   +A +++S++  KT++G  +  +T  +     +   F
Sbjct: 1006 NQT-IAGLIISQRIVKTKRGDNMAILTLDDRTGRMDITLF 1044


>gi|251771258|gb|EES51839.1| DNA polymerase III, alpha subunit [Leptospirillum ferrodiazotrophum]
          Length = 1193

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1044 (40%), Positives = 622/1044 (59%), Gaps = 32/1044 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSLL+GA  +  +++K A    PA+A+TD  NLF ALEF ++A   G++PI
Sbjct: 9    FVHLHLHTQYSLLDGANKIAPLMEKCARLGMPAVAMTDHGNLFGALEFYREAQKHGVKPI 68

Query: 71   IGCQLDIDMQ-----DNLKMTNQGKTPFPTVPS----IVLLVSTAEGYQRLIELVSRMYL 121
            +GC+L +  +     + L M + G      + +    + LL     GYQ L+E+VSR +L
Sbjct: 69   LGCELYVTPRSRFDREELLMPSGGPHGGKKINNASFHLTLLAENLTGYQNLLEIVSRAHL 128

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180
             +      R     L     EGLI L+G   G +         + A      F+ +FG  
Sbjct: 129  -EGFYYRPRADFELLYR-HREGLIALSGCLKGQVSYLLTRGERERACATADLFRNIFGPG 186

Query: 181  RLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            R +  LQ + G +  R    +++ L+   ++P+VATN+  +L  ED   HD+L+ +    
Sbjct: 187  RYFFELQAN-GLEEQRVANRELLSLSREMKIPVVATNDCHYLDREDALPHDILLCLQTGK 245

Query: 239  VVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             +   +R R   +  YLK+  E++  F ++PEA+ENT+ IA R    L +    +P ++ 
Sbjct: 246  TLDDPNRLRFGAEEFYLKSPDEVIEAFREIPEAVENTLAIAERIDLTLDLKKTYMPEYV- 304

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFS 354
             +  +  +       +++  GLEVR  +    K + A+    YR RL+ E+ VI  M F+
Sbjct: 305  PDVGETGRTINELFCDRSREGLEVRFGE----KEFDAERKELYRARLEREIAVILEMGFA 360

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV DFI+ A++  I VGPGRGS AGS+ A++L IT+IDP+ F LLFERFLNP+R+S
Sbjct: 361  GYFLIVWDFIRKAREQGIAVGPGRGSAAGSLVAWSLRITNIDPIAFGLLFERFLNPERVS 420

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            +PD D+DFC +RR EVI YV  KYG +RV+ I TFG++ AKA++RDVGR L M YS+VDR
Sbjct: 421  LPDIDVDFCMNRRGEVIDYVMKKYGADRVSMIATFGTMGAKASIRDVGRVLGMTYSEVDR 480

Query: 475  LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            + K+IP   A  ++L+ A+  +  FRE R  DP++DRL+ +S KLEG+ RHAS HAAGIV
Sbjct: 481  VAKMIPT--ALEMTLEKALEQNKEFRELREKDPAIDRLVSLSMKLEGITRHASIHAAGIV 538

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            I   PLS  VP+ R    +  VTQF    +EK GL+KFDFLGL TLTL++ ++  +    
Sbjct: 539  ISQDPLSGHVPLMRGAGGET-VTQFTKDDVEKVGLVKFDFLGLTTLTLIEDAVRRIRVHT 597

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             + D+  IP DD  TY  L    TLGIFQLES GM   L  + P+  ED+IAL++LYRPG
Sbjct: 598  PEFDIDRIPLDDPGTYAFLQGGKTLGIFQLESRGMTDLLVKLAPEVFEDLIALLALYRPG 657

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PI++ +V  +  RK    +IV  HP ++P+L+ET GVI+YQEQVMQIA +L+G+SL +AD
Sbjct: 658  PINSGMVDDFIRRKKNPREIVYEHPDLEPILRETYGVIVYQEQVMQIANVLAGFSLGDAD 717

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM+K K  FI+GA +    +T A +IFEL+A FA YGFNKSH+AAYA+
Sbjct: 718  LLRRAMGKKKPEEMEKMKGLFITGAVERKTDRTKADHIFELMAHFAGYGFNKSHSAAYAL 777

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISYQTA++K HYPVEF AA +T  +D+ EKI  F   AR+ +I+++ P +N   +DF V 
Sbjct: 778  ISYQTAYLKAHYPVEFWAALLTNALDDTEKIGTFLAGARELDIRVLSPDINESLLDFTVL 837

Query: 832  DNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              R I + L A+K VG      I+E  +A  PF S  DF  R+D  K+NRRV+E+L  AG
Sbjct: 838  PGRTIRFGLGAVKNVGRQAVEAILEIRAAGGPFLSFPDFMKRIDGHKVNRRVVEALAKAG 897

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A D  G +R   + ++D + ++   ++K + +K   +F   +     +         +  
Sbjct: 898  AFDSLGTTRAAAMANIDPLLEWVAGIKKPKKSKMGKLFREFEQDSEPEAPWTAVPEWDEK 957

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
               + E+  LGFY S HP+  Y  I  ++      +      G+ + +  +V + ++ KT
Sbjct: 958  TLLKAEREGLGFYLSRHPMTPYMKIAEELECPTLGQLEGQAEGSTVSVFGIVSAIRELKT 1017

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            +KG ++  VT  +  +  E   FP
Sbjct: 1018 KKGDKMAQVTLMDFEQSLEMVLFP 1041


>gi|303248384|ref|ZP_07334644.1| DNA polymerase III, alpha subunit [Desulfovibrio fructosovorans JJ]
 gi|302490182|gb|EFL50100.1| DNA polymerase III, alpha subunit [Desulfovibrio fructosovorans JJ]
          Length = 1160

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/1027 (40%), Positives = 607/1027 (59%), Gaps = 31/1027 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YSLL+GA+ + +++        PA AITD  NL  AL F   A  A ++PI
Sbjct: 4    FVHLHCHTEYSLLDGAIRIGDLVKTAKGFGCPAAAITDHGNLHGALMFYDYAKKADLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +D  K     ++P      +VLL     GY  L++LVS+ +L +      R
Sbjct: 64   IGCEVYVAKEDRRK--KDARSPRDAGYHLVLLAKDMTGYHNLLKLVSKGHL-EGFHYKPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    L + G EGLI L+    G I++     S   A      +  LF DR Y+ +Q + 
Sbjct: 121  VDKELLGQYG-EGLIALSACLKGEINQKLLRESRDAAVATAREYAALFPDRFYLEIQDNG 179

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              ++   +  +++L+   +LPLVATN+  +L  +D EAHD+L+ +  +  V    R R T
Sbjct: 180  IPEQTTVNNFLIELSDDLKLPLVATNDCHYLHADDAEAHDILLCIQTAACVDDVKRMRFT 239

Query: 250  P-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILPRFIEKECDDIQK 305
              D Y ++  EM   F D+P+AL NT EIA R    L     H P+      K  DD+  
Sbjct: 240  SNDLYYRSPEEMAEAFKDVPQALANTCEIADRIDVKLDFDGYHFPVYKAPPGKSLDDVMS 299

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +   E       GL+ RLA+   A     + Y +RL+ EL VI +M F GYFLIV DFI 
Sbjct: 300  DMARE-------GLKKRLAKMPEAD---PKQYWERLELELGVITKMGFPGYFLIVQDFIN 349

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK ++IPVGPGRGS AGS+ AY+L IT++DP+ + L FERFLN +R+SMPD D+DFC+ 
Sbjct: 350  WAKDHDIPVGPGRGSAAGSLVAYSLRITNLDPMPYDLFFERFLNIERVSMPDIDVDFCER 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVIRYV   YG + VAQI TFG+++AK  +RDVGRAL M + + DR+ KLIP D   
Sbjct: 410  RRHEVIRYVTEHYGADAVAQITTFGTMKAKGVVRDVGRALGMTFGETDRIAKLIPEDLKM 469

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+  +   +     DP +  L++IS++LEGL RHASTHAAG+V+ D+ +++ VP+
Sbjct: 470  TID-KALELEPELKTLVRTDPRIAHLIDISRRLEGLARHASTHAAGVVVSDKAMTEYVPL 528

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFD 604
            Y+  +++  VTQ++MK +EK+GL+KFDFLGLKT+T++  +L  + + G +  D   +P  
Sbjct: 529  YKG-KNNETVTQWDMKRVEKSGLVKFDFLGLKTITVIDDALKIIREMGEEPPDFETLPMT 587

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
            D  TY L     T GIFQ+ES GMR+ L  ++P+C ED+IA+++LYRPGP+ + +V  + 
Sbjct: 588  DPATYELFARGDTDGIFQVESQGMRKYLRMLKPNCFEDLIAMLALYRPGPLGSGMVELFI 647

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G + +   HPL++  L+ T GVI+YQEQVM+IAQ+L+ YSL   D+LRRAMGKK  
Sbjct: 648  RRKHGLDPVEYPHPLLEETLRSTYGVIVYQEQVMKIAQVLANYSLGGGDLLRRAMGKKNA 707

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EEM +Q+  F+ G ++N I    A  IF+L+ KFA+YGFNKSH+AAYA ISYQTA++K H
Sbjct: 708  EEMSRQRGIFVEGCAQNKIDAKKANEIFDLMEKFAEYGFNKSHSAAYAQISYQTAYLKAH 767

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YPV F+AA MT +M+N +K+ ++    R  +I++ PP VN     F V DN+I Y LAA+
Sbjct: 768  YPVAFMAALMTSDMENQDKLLQYIAACRAGDIELCPPDVNAGLPHFSVKDNKILYGLAAV 827

Query: 843  KGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K +G      I  E   D PF SL D  SRV+ +K+ +RV+E L+  GA D FG +R  L
Sbjct: 828  KNIGRDAVLEIAAEREKDGPFSSLLDLTSRVNMRKVTKRVIEYLIKCGACDGFGCTRAGL 887

Query: 902  LQSLDNI----QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN--SSVRFENE 955
               LD      Q+ A    + R +  E +    K T    ++  +  +           E
Sbjct: 888  FAGLDQAAAVGQRRAAEKSEGRLSLMELVPDKPKPTVGLGLSCPEAELPEWLHEEMMAYE 947

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LGFY + HPL  Y+  LR M +    +      G  +++  + V+ ++  T+KG ++
Sbjct: 948  KEALGFYLTSHPLLAYERDLRSMRVTTLSQCAGLEPGVEVKVPCICVTTKEIITKKGQKM 1007

Query: 1016 GWVTFSE 1022
             +    +
Sbjct: 1008 AFCKLED 1014


>gi|157829043|ref|YP_001495285.1| DNA polymerase III subunit alpha [Rickettsia rickettsii str. 'Sheila
            Smith']
 gi|165933767|ref|YP_001650556.1| DNA polymerase III subunit alpha [Rickettsia rickettsii str. Iowa]
 gi|157801524|gb|ABV76777.1| DNA polymerase III subunit alpha [Rickettsia rickettsii str. 'Sheila
            Smith']
 gi|165908854|gb|ABY73150.1| DNA polymerase III alpha subunit [Rickettsia rickettsii str. Iowa]
          Length = 1181

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1084 (38%), Positives = 633/1084 (58%), Gaps = 85/1084 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++  ++++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I            K        I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNI------------KYDIDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L E   EGLI L   + G + +     + + A       +++ GDR Y  + R
Sbjct: 111  DHINFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +++ E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y ++  EM+ +FSDLP A++NTV +  RC F    + P+LP F  K+       E
Sbjct: 230  VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATKDIS-----E 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARMKFSGYFLIV 360
             + ++  A  GL  RLA    ++    ++       Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIKKDATEGLLARLAAKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PVSL QA+ +      A   +           +  +++ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDSNSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAA+Y 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT------- 823
            VISYQTA++K +YP EFL A + LE++N +KI  F Q+A+   I+I+ P++N        
Sbjct: 765  VISYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824

Query: 824  ---------------PCVDFKVGD--------------NRIYYSLAAIKGVGTTTARHIM 854
                           P +D  + +                I ++L AIKGV     + + 
Sbjct: 825  QFSDTVIPHSVKPVIPRLDRGIQEISKDTVVKPRYNIAGAIIFALGAIKGVTPNFGKLVT 884

Query: 855  -EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
             E  A   F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QLL S+  +  Y+ 
Sbjct: 885  DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944

Query: 914  -WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
             + E+  +N+   I   +  + S  I +     + +++ F  E   +G + S HPL  Y+
Sbjct: 945  AYHEEQESNQFSLI---KVSSLSPTILVSSDYADKNTLAFY-EFEAMGLFISNHPLTEYQ 1000

Query: 973  PILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVT--FSEPAKEYE 1028
             I  ++ I    +    +    N + LA ++   Q+K +R  +R  +VT   S+P   +E
Sbjct: 1001 EIFSRLNILNTADLHNNLPDGTNRVNLAGVI---QKKDSRMSARGRFVTLVLSDPENIFE 1057

Query: 1029 ANFF 1032
             + F
Sbjct: 1058 LSIF 1061


>gi|309973764|gb|ADO96965.1| DNA polymerase III alpha subunit [Haemophilus influenzae R2846]
          Length = 1159

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/1057 (39%), Positives = 618/1057 (58%), Gaps = 56/1057 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +      K    G   F     + LL    EGY+ +  L+S+ Y   +
Sbjct: 61   SGMKPIIGTDVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QR 108

Query: 125  GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            G   +  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y
Sbjct: 109  GYNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFY 167

Query: 184  VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L R    +  R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +  
Sbjct: 168  LALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDD 227

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +  
Sbjct: 228  PKRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L  K+  GLE RLA        +      Y +RL  EL+VI +M F GYFL
Sbjct: 287  ----STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 403  DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   ++ +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    
Sbjct: 463  IPPDPGMTLA-KAFEAEPQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTL 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594
            ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R V    
Sbjct: 522  ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGK 581

Query: 595  -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPG
Sbjct: 582  PRVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641

Query: 654  PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+
Sbjct: 642  PLQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYT 701

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+
Sbjct: 702  LGGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+KTH+P EF+AA MT E+DN +KI     +  +  +++ PP +N    
Sbjct: 762  AAYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884
             F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  E+
Sbjct: 822  HFSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFEN 881

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ +GA D  G  R  L ++L++  + +    K+      ++F          +T     
Sbjct: 882  LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFG--------VLTETHEE 933

Query: 945  VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
            VEN+             + E+  LG Y S HP+  Y   L        ++     RG   
Sbjct: 934  VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +A ++V+ +   T+KG+R+G  T  + +   +   F
Sbjct: 994  TVAGLLVASRIAITKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|300312866|ref|YP_003776958.1| DNA polymerase III subunit alpha [Herbaspirillum seropedicae SmR1]
 gi|300075651|gb|ADJ65050.1| DNA polymerase III (alpha chain) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 1152

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/992 (41%), Positives = 595/992 (59%), Gaps = 41/992 (4%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +P FVHL++HS YS+++G + +++I+   A D Q A+A+TD  NLF  + F ++A   G+
Sbjct: 3   TPQFVHLRMHSEYSIVDGLVRIDDIVKAAAKDGQAALAVTDLANLFCMVRFYKEARGKGV 62

Query: 68  QPIIGCQLDIDMQDNLKMTNQG--KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           +PI GC        +L +TN    + PF     +++L+    GY +L E++S+ +L +Q 
Sbjct: 63  KPIAGC--------DLWITNDADREKPF----RLLVLIKNRHGYLQLCEVLSQAWLNNQY 110

Query: 126 KQSVRICLSWLQEI----GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
           K    + + WL  +    G  GLI L+G + G I +A    +   AE     + ++F   
Sbjct: 111 KGRAEVRMEWLDALRHQEGGNGLIALSGAAMGDIGQAIDNGNLAQAEACARRWAEIFPGA 170

Query: 182 LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            Y+ LQR  +     +  Q V L     LP VAT+   F S E++ AH+    +A   ++
Sbjct: 171 FYLELQRAGQANMEVQVRQSVALGAKLGLPCVATHPIQFQSPEEFIAHEARTCIAEGEIM 230

Query: 241 SQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
           +   R  R     Y K+++EMV +F+DLP A+ NTVEIA+RC+ +LQ+  P LP F   +
Sbjct: 231 ANARRVRRFNEQQYFKSQAEMVELFADLPGAVANTVEIAKRCNLVLQLGKPQLPDFPTPD 290

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              I    ++ L  +  AGLEVRL +       +      Y  RL+FE N I +MKF GY
Sbjct: 291 GMTI----DDFLVAQTKAGLEVRLKELFPNEAEREKQRPRYEARLEFENNTIIKMKFPGY 346

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
           FLIVADFIQWAK N +PVGPGRGSGAGS+ AY L ITD+DPLR++LLFERFLNP+R+SMP
Sbjct: 347 FLIVADFIQWAKNNGVPVGPGRGSGAGSLVAYCLLITDLDPLRYNLLFERFLNPERVSMP 406

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           DFDIDFCQ+ RD VI+YV+++YG E V+QI TFG++ AK A+RDVGR L + Y+  D + 
Sbjct: 407 DFDIDFCQEGRDRVIQYVKDRYGKEAVSQIATFGTMAAKGAVRDVGRVLDLGYNFCDGIS 466

Query: 477 KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
           KLIP  P   V+L  AI ++   +E    +  V +L+ ++Q++EG+ R+   HA G++I 
Sbjct: 467 KLIPFKPGKLVTLADAIEEEPLLKERLENEEEVKQLMGLAQQVEGIARNIGMHAGGVLIA 526

Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF---LAQR 592
              L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L +++ +   L   
Sbjct: 527 PGKLTDFCPLYTQGGDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIRMLDPA 586

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               DL+ +P DD  +Y LLT   T+ +FQLES GM+  L+  +PD  EDIIALV+LYRP
Sbjct: 587 MADFDLAKLPLDDRPSYELLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRP 646

Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           GP+D I  +  RK+G E      P  + +L ET G+++YQEQVMQ+AQ++ GYSL  AD+
Sbjct: 647 GPMDLIPDFCKRKHG-EAFDYPDPRTEGILSETYGIMVYQEQVMQMAQVIGGYSLGGADL 705

Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           LRRAMGKK  EEM K +E F  GA+KNG+ +  A  IF+L+ KFA YGFNKSHAAAYA++
Sbjct: 706 LRRAMGKKKAEEMAKHRELFREGAAKNGLDQAKADEIFDLMEKFAGYGFNKSHAAAYALL 765

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVDF-KV 830
           SY TA++K H+P  F+AA+++L M++ +K+K   +DA     + I+PP +N     F  V
Sbjct: 766 SYYTAYLKAHHPAAFMAANLSLAMEDTDKVKILIEDAIDICKLAILPPDINKSDYRFMPV 825

Query: 831 GD-----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           G+      +I Y L A+KG G      I+EA    PF  L DF  RVD K++NRR ++SL
Sbjct: 826 GEPGKKATQIRYGLGAVKGAGQNAIEAILEARKSGPFKDLFDFAKRVDKKQINRRTIDSL 885

Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
           + AGA DCF   R  L  S++   + A+  EK  +    ++F  +       +   +   
Sbjct: 886 IRAGAFDCFKVDRAVLQASVNLAWESAEQAEK--SANQVSLFGGDDSDLEAPLEYVQVPP 943

Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
            +   R   E+  LGFY SGH    Y+  +R+
Sbjct: 944 WSDKQRLTEEKGALGFYLSGHLFSAYEKEVRR 975


>gi|170733672|ref|YP_001765619.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia MC0-3]
 gi|169816914|gb|ACA91497.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia MC0-3]
          Length = 1175

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1022 (40%), Positives = 621/1022 (60%), Gaps = 42/1022 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + +++I+   AAD Q A+A+TD  N F  + F Q+A   GI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC + I   D+    ++          ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGCDVWIANPDDRDKPSR----------LLLLVKDKVGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL     +GL+ L+G   G I  A    + + A +    + ++F    Y+ LQR
Sbjct: 114  AELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAAALAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T D Y + + EM ++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFTTDQYFRTQDEMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RLAQ       +      Y +RL+FE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSKEGLEARLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +    K D SL
Sbjct: 529  FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDSSKADWSL 588

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L A+KG G      I+ A  +K F  L DFC R+D + +NRR +E+L+ AGA 
Sbjct: 829  SRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QL+ S+    + A   E N       +F  + G  S    +++ + ++   R
Sbjct: 889  DSLNPNRAQLIASVPLAMEAADQAEANAM--QAGLF--DMGAESPHALVDEPAWDDKR-R 943

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + V  ++ G +  +A ++ S + + T+
Sbjct: 944  LQEEKAALGFYLSGHLFDAYRDEVRRF----VRQKVGDLKEGRDKLVAGIIASLRTQMTQ 999

Query: 1011 KG 1012
            +G
Sbjct: 1000 RG 1001


>gi|217970003|ref|YP_002355237.1| DNA polymerase III subunit alpha [Thauera sp. MZ1T]
 gi|217507330|gb|ACK54341.1| DNA polymerase III, alpha subunit [Thauera sp. MZ1T]
          Length = 1174

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/1046 (39%), Positives = 610/1046 (58%), Gaps = 42/1046 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL++HS YS+ +G + L+  +   AAD  PA+ ++D  NLF  ++F + A   GI
Sbjct: 17   APRFVHLRLHSEYSITDGIVQLDQAIAAAAADGMPALGVSDLANLFGMVKFYKGARGKGI 76

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+G         +  + N+ +   P    ++L+     GY +L EL++R YL ++ + 
Sbjct: 77   KPIVGV--------DAWIRNEAERDKPQ--RVLLICKNRAGYGQLCELLTRAYLENKHRG 126

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   W +      L+ L+G  SG I  A    +  +AE+    + +LF D  Y+ +Q
Sbjct: 127  RAEMRREWFENGAASALLCLSGAMSGDIGAAIAAGNLALAEQLAADWARLFPDAFYIEIQ 186

Query: 188  R--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R  H G + Y     V+LA    LP+VAT+   FL  ED++AH+  + +A   V++ K R
Sbjct: 187  RAGHPGTESYIR-HAVELAGRLGLPVVATHPVQFLKREDFKAHEARVCIAQGYVLADKRR 245

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  T + YLK+++EM  +F+DLPEALEN VEIARRCS  +Q+    LP F   E   + 
Sbjct: 246  PRDFTEEQYLKSQAEMCELFADLPEALENAVEIARRCSLTVQLGKNFLPLFPTPEGMTL- 304

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L  +A  GLE RLAQ       +      Y QRL FE + I +M F GYFLIVA
Sbjct: 305  ---DDFLVAEAKKGLEERLAQLYPHPEERERQRPRYEQRLKFETDTIIQMGFPGYFLIVA 361

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQW K N +PVGPGRGSGAGS+ AY+L ITDIDPL ++LLFERFLNP+R+SMPDFDID
Sbjct: 362  DFIQWGKNNGVPVGPGRGSGAGSLVAYSLKITDIDPLEYALLFERFLNPERVSMPDFDID 421

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQD R  VI YV+ +YG + V+QI TFG++ +KA +RDVGR L +PY   DRL KLIP 
Sbjct: 422  FCQDNRYRVIEYVRERYGKDAVSQIATFGTMASKAVVRDVGRVLDLPYGLCDRLSKLIPI 481

Query: 482  DPAHPVSLQAIADDSRFREARLAD----PSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            + A PVSL    +        +AD     SV  L  ++Q LEGL R+   HA G++I   
Sbjct: 482  EGAKPVSLNKAYEMEPQIGEMMADGNDGESVRDLWSLAQPLEGLSRNVGMHAGGVLIAPG 541

Query: 538  PLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595
             L+   P+Y  D     PV+QF+   +E  GL+KFDFLGL+ LT+++ +L+++A+  G +
Sbjct: 542  KLTDFCPLYIADGDDATPVSQFDKDDVEAVGLVKFDFLGLRNLTIIELALEYVARLEGSR 601

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             DL  + F+D   Y +L    T  IFQ+ES GM++ L+ + PD  EDIIA+++LYRPGP+
Sbjct: 602  PDLMSLGFEDPAAYQILKDANTTAIFQVESDGMKKLLKKLAPDRFEDIIAVLALYRPGPL 661

Query: 656  DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             + +V  +  RK G+++I   HP +   L+ T GVI+YQEQVMQI+Q++ GY+L  AD+L
Sbjct: 662  GSGMVDDFILRKKGQQEIDYFHPDLKACLEPTYGVIVYQEQVMQISQIIGGYTLGGADML 721

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  +EM K +     GA + G    +A  +F+L+ KFA+YGFNKSH AAYAV++
Sbjct: 722  RRAMGKKKADEMAKHRATIAEGAKQKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAVVT 781

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y TAW+K H+   F+AA+M+ ++DN + +K F +D     I+++PP VN     F   D 
Sbjct: 782  YHTAWLKAHHCAAFMAATMSSDLDNTDTVKIFYEDTLANGIKVLPPDVNASDYRFVPVDR 841

Query: 834  RIY-YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +I  Y L A+KGVG    R I+ A      F  L DFC RVD + +NRRV+E+L+ AGA+
Sbjct: 842  KIIRYGLGAVKGVGEPAVRAILAAHEKGGDFRDLFDFCERVDRRMVNRRVIEALIRAGAM 901

Query: 892  DCF----GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            D      G  R QL+ ++    + A+  +         +F              K     
Sbjct: 902  DTLPGHKGLDRAQLMATVALAMEAAE--QAAANAMQGGLFDLMPEAAGAAPEFAKVRAWT 959

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQ 1006
               R + E+  +GF+ SGHP + +KP +R+        ++A +    +I + A VV +Q+
Sbjct: 960  ERERLKEEKLAIGFFLSGHPFNAFKPEVRRF----VRRTLAQLEPSRDITMLAGVVMEQR 1015

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
             K     ++ +V   +  +  E   +
Sbjct: 1016 TKVGNRGKMAFVLLDDGTEPREVTVY 1041


>gi|261492352|ref|ZP_05988914.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            serotype A2 str. BOVINE]
 gi|261312035|gb|EEY13176.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            serotype A2 str. BOVINE]
          Length = 1142

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1036 (39%), Positives = 606/1036 (58%), Gaps = 48/1036 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            ++ G   + +++    A+   A+ +TD  N    ++F  +A  AGI+PIIG  + +    
Sbjct: 1    MINGLAKVKSLVKTAVANNMVAMGLTDFTNFCGLVKFYGEALGAGIKPIIGADVYV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK-QSVRICLSWLQEIG 140
                T  G   +     + LL    +GY  + +++S+ Y   QG  +   +   WL E+ 
Sbjct: 57   ---RTEAGSEDYF---ELTLLAKNNKGYHNITQILSKAY--QQGYIEFPMVEREWLAEL- 107

Query: 141  TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQ 199
             EG+I+L+GG  G + +A    + Q AE+++  +++ + +  Y+++ R    D  R   Q
Sbjct: 108  NEGIIILSGGRMGDVGKALLKENRQEAEEKVAFYQQYYPNHFYLSVCRTGRADEERYIKQ 167

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRS 258
             V+ +  + +PLVA N+ +FL E+D++AH++ +A+  S  +    RP+  +P  Y +   
Sbjct: 168  AVEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPKQYFRTEE 227

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
            EM  +F+DLP AL NTVEIA+RCS  +++    LP F   E        E+ L  K+  G
Sbjct: 228  EMCKLFADLPSALANTVEIAKRCSVTVRLGEYFLPNFPTGELST-----EDFLVKKSKEG 282

Query: 319  LEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
            LE RL         +      Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVG
Sbjct: 283  LEERLEFLFPDPEERANKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVG 342

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
            PGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D RD VI +V 
Sbjct: 343  PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVA 402

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              YG + V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLIP DP   +  +A A +
Sbjct: 403  ETYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPGMTLE-KAFAAE 461

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
             +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PV
Sbjct: 462  PKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLHPV 521

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYH 610
            T F+   +E AGL+KFDFLGL+TLT+++ +L+ + +R  +     + +  I  DD +++ 
Sbjct: 522  THFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINERLAREGKEPIRIETISLDDKKSFA 581

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGK 668
            LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+++ +V N  +RK+GK
Sbjct: 582  LLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGK 641

Query: 669  EKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            E++        H  + P+L+ T GVI+YQEQVMQIAQ L+GY+L  AD+LRRAMGKK  E
Sbjct: 642  EEVSYPDPQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPE 701

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM  Q+E F  GA   GI   +A  IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HY
Sbjct: 702  EMAAQREVFEKGAEAKGIDGKLAGQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 761

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAI 842
            P EF+AA MT EMDN +KI  F  +     + ++PP VN+    F V +   I Y L AI
Sbjct: 762  PAEFMAAVMTSEMDNTDKIVGFYDECMNMGLTVVPPDVNSGKHRFSVNEKGEIVYGLGAI 821

Query: 843  KGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGVG      I+ A   +  F  L D  +RVD KK+NRR  ESL+ +GA D  G  R  L
Sbjct: 822  KGVGEGPIEAILAARQKEGKFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAAL 881

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS-----SVRFENEQ 956
            +++L++  K +    K       ++F    G  ++     + +  N+      V  + E+
Sbjct: 882  MKNLEDALKASDQHAKMEELGQSDMF----GVLTETPEEVQNAYANTPKWSEQVILDGER 937

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LG Y SGHP+  +   L         E   T RG    ++ +V++ +   T++GSRIG
Sbjct: 938  ATLGLYLSGHPIGRFLKELSHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVTKRGSRIG 997

Query: 1017 WVTFSEPAKEYEANFF 1032
              T  + + + +   F
Sbjct: 998  IATIEDRSGKLDITLF 1013


>gi|212710382|ref|ZP_03318510.1| hypothetical protein PROVALCAL_01442 [Providencia alcalifaciens DSM
            30120]
 gi|212686964|gb|EEB46492.1| hypothetical protein PROVALCAL_01442 [Providencia alcalifaciens DSM
            30120]
          Length = 1144

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1040 (40%), Positives = 613/1040 (58%), Gaps = 54/1040 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K+AA   PA AITD  NL   ++F   A  AGI+PIIG    ++ + 
Sbjct: 1    MIDGLAKTGPLVKKVAAMGMPAFAITDFTNLCGLVKFYGAAHGAGIKPIIGADFYMESE- 59

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
              ++ ++       V  + +L    EGYQ L  L+S  Y    G     I   WL +   
Sbjct: 60   --QLGDE-------VAHLTVLARNNEGYQNLTLLISEAYQKGYGAIGPTIHRDWLVK-HK 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGLI+L+GG  G + +     +  + ++ L  ++  F D  Y+ L R  R  +       
Sbjct: 110  EGLILLSGGRKGDVGQFLLRGNQALVDESLEFYQTYFPDAYYLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     ++   RP+  +P  YL+   E
Sbjct: 170  VELATQRGLPVVATNDVCFIESSDFDAHEIRVAIHDGYTLADPKRPKNYSPQQYLRTEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEALEN+VEIA+RC+  +++    LP+F   +      E E+ L  +A  GL
Sbjct: 230  MCELFSDIPEALENSVEIAKRCNVTIRLGEYFLPKFPTGDM-----ETEDFLVMRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y +RL+ ELNVI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLKFLFPDEKVRAEKRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL   LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLELDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFEVEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     +D++ IP DD +++ +
Sbjct: 524  QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKNLDPIDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVNWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  G+ KNG+   +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGSIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V D   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  + D C+RVD KK+NRRV+E L+ AGA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARQQGGIFKEIFDLCARVDIKKINRRVMEKLIMAGAFDHLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953
             SL++  K A        ++H    A  +G     +      VE+S          V  +
Sbjct: 884  SSLEDALKAA--------DQHAKAEAIGQGDMFGVLAEAPEQVESSYASVPKWPEQVVLD 935

Query: 954  NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             E+  LG Y +GHP+  Y   I R       ++   T RG    +  +V+S +   T++G
Sbjct: 936  GERETLGLYLTGHPITRYLSEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRG 995

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +RIG  T  + +   +   F
Sbjct: 996  NRIGICTLDDRSGRLDIMLF 1015


>gi|241763389|ref|ZP_04761444.1| DNA polymerase III, alpha subunit [Acidovorax delafieldii 2AN]
 gi|241367431|gb|EER61742.1| DNA polymerase III, alpha subunit [Acidovorax delafieldii 2AN]
          Length = 1198

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/997 (40%), Positives = 582/997 (58%), Gaps = 48/997 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL++H+ +S+++G   ++++    A D QPA+AITD NNLF A++F ++A   G++
Sbjct: 16   PMFVHLRLHTEFSVVDGTNRIDDLAKAAAKDGQPALAITDLNNLFGAIKFYKEARGKGVK 75

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G ++ ++ +        G  P      +++LV   +GY  L EL++R +  +  K  
Sbjct: 76   PILGAEIFLEGE-------AGAAP----SRMLVLVQGRQGYLNLSELLARAWTRNVVKAQ 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                  WLQE+G EGLI + G  +GP+ +A        A    L    +F  R Y+ +QR
Sbjct: 125  AICTWDWLQELG-EGLIAIAGAQAGPVGQALMKGDDAGAAALALRLAGIFPHRFYIEVQR 183

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D       VQLA    LP+VAT+   F + +DYEAH+  + +A   ++  + R R
Sbjct: 184  AGRADDEAHVVAAVQLAARLHLPVVATHPVQFATADDYEAHEARVCIAEGEILGNQRRVR 243

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + Y K+ ++M ++F+DLP AL N+VEIARRC+  L +  P LP F     +     
Sbjct: 244  KFTREQYFKSSAQMQALFADLPTALANSVEIARRCNITLVLGKPQLPNFPIPPVNGQVLS 303

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             ++  R+ +  GLE RL         +      Y +RL+FEL  I +M F GYFLIV DF
Sbjct: 304  VDDYFRHVSFEGLEERLRLLFPDEARRNVERPRYVERLEFELGTILKMGFPGYFLIVGDF 363

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK +  PVGPGRGSGAGS+ AYAL ITD+DPL ++LLFERFLNP+R+SMPDFDIDFC
Sbjct: 364  IQWAKTHGCPVGPGRGSGAGSLVAYALKITDLDPLEYNLLFERFLNPERVSMPDFDIDFC 423

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P
Sbjct: 424  QSNRDRVIDYVKEKYGKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKP 483

Query: 484  AHPVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
                +LQ              A+  +    E    +  V  ++E++QKLEG+ R+   HA
Sbjct: 484  GMSYTLQYPPEVKKDGDKNNYALELEPLLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHA 543

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F+
Sbjct: 544  GGVLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFI 603

Query: 590  AQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             +R    +      IP DD  TY L +   T  +FQ ES GM+  L   +P  +ED+IAL
Sbjct: 604  MKRHKGQENFAYENIPLDDGPTYRLFSEGKTEAVFQFESRGMQGMLREARPSRLEDLIAL 663

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
             +LYRPGP+D I  + NRK+GKE +   HPL++P+L ET G+++YQEQVMQ AQ+L GYS
Sbjct: 664  NALYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLSETYGIMVYQEQVMQTAQVLGGYS 723

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM + +  F  GA++ GIS+  A  +F+L+ KFA YGFNKSHA
Sbjct: 724  LGGADMLRRAMGKKKAEEMAEHRAIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHA 783

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPC 825
            AAY++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA++ F +   PP VN   
Sbjct: 784  AAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAKKNFGLTFEPPDVNRGM 843

Query: 826  VDFK-VGDNRIYYSLAAIKGVGTTTARHIMEA----------SADKPFDSLEDFCSRVDS 874
              F+ V D  I Y L A+KG G      I+ A          S   PF SL DFC RVD 
Sbjct: 844  YRFEPVTDKVIRYGLGAVKGTGQQAIEAIVAAREGRGEGPQGSTKGPFKSLFDFCVRVDR 903

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY--AQWVEKNRTNKHENIFAHEKG 932
             +LN+R +E+L+ AGA D    +R  ++ S+D    +  A     N+    + +     G
Sbjct: 904  ARLNKRTVEALIKAGAFDALNLNRAAMVASIDRAFDFAAATLANVNQGGLFDMMGEDAHG 963

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            + + +  L          R   E+  +GFY SGH  D
Sbjct: 964  SSTQEPDLVDAVPWGIKERLTQEKTAVGFYLSGHLFD 1000


>gi|170729407|ref|YP_001774840.1| DNA polymerase III subunit alpha [Xylella fastidiosa M12]
 gi|167964200|gb|ACA11210.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
          Length = 1193

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1054 (39%), Positives = 632/1054 (59%), Gaps = 74/1054 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLF 53
            + SFVHL +H+ +SL +  + +               N+L +      PA+A+TD NNLF
Sbjct: 3    TSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNLF 62

Query: 54   SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
            + ++F + A   GI+PI G  L I   ++        TP+     + LL     GY  L 
Sbjct: 63   ALIKFYKAAETVGIKPISGADLLIAEPEH--------TPW----GMTLLCRDHAGYLNLS 110

Query: 114  ELVSRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
            +L+SR +L     +  V +   W+++   + L  L G  S  + + F    + +AE++L 
Sbjct: 111  QLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIGRHS-LVGQLFAKGRADLAEQQLA 168

Query: 173  TFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             ++++FGD L++ L R  R  +       +Q+A    +P++A+N+  FL   D+ AH+  
Sbjct: 169  DWQRVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEAR 228

Query: 232  MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +A   ++    RPR  +   YL++  EM ++F+D+P+AL+NT  +A+RC+  +++   
Sbjct: 229  VCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGTY 288

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             LP +     + +    ++ +R ++  GLE RL +  +A G   +DY  RL+FEL+ I +
Sbjct: 289  FLPNYPVPNDETL----DSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTIIK 344

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M FSGYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP
Sbjct: 345  MGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLNP 404

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFDIDFC +RRDEVI YV  KYG ERV+QIIT+G++ AKA +RDVGR L  PY 
Sbjct: 405  ERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYG 464

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFRE---ARL-----ADPSVDRLLEISQKLEGLY 522
             VD + KLIP+     ++L+    +    +   A L     A+  V  LL ++++LE L 
Sbjct: 465  LVDSVAKLIPSTLG--ITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLT 522

Query: 523  RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PL++  P++     + R   PVTQF+   +E+ GL+KFDFLGL+T
Sbjct: 523  RNAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRT 582

Query: 579  LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  + +R  +     VD++ +P DD  TY  +  +  T  +FQ ESSGMR+ L
Sbjct: 583  LTIIDWAVKAINKRHARACIDPVDITALPLDDLPTYKDIFASGNTSAVFQFESSGMRRLL 642

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +  RK+G ++ +   P    +LK+T G+++YQ
Sbjct: 643  KDARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQ 702

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+    A  IF+L
Sbjct: 703  EQVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDL 762

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  +AR  
Sbjct: 763  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNL 822

Query: 813  NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
            N++++ P++N     F+    + I Y L AIKGVG +    I++      P+ SL DFC+
Sbjct: 823  NLKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCT 882

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929
            RV S KLNRR LE+++ AGALD  G +R  ++  L  + K  + + + R +   ++F + 
Sbjct: 883  RVTSAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNA 942

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVA 988
            + GT + ++ L +      +     E+  LG YFSGHP D Y+  ++++ G      ++ 
Sbjct: 943  DPGTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALE 1002

Query: 989  TI-----RGN----------NIRLAAMVVSKQQK 1007
             I     RGN          N  LA +VVS ++K
Sbjct: 1003 RILSSQQRGNGEKRTWQPEVNTILAGLVVSMRRK 1036


>gi|238650797|ref|YP_002916652.1| DNA polymerase III subunit alpha [Rickettsia peacockii str. Rustic]
 gi|238624895|gb|ACR47601.1| DNA polymerase III subunit alpha [Rickettsia peacockii str. Rustic]
          Length = 1181

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1084 (38%), Positives = 633/1084 (58%), Gaps = 85/1084 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++  ++++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I            K        I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNI------------KYDIDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L E   EGLI L   + G + +     + + A       +++ GDR Y  + R
Sbjct: 111  DHIDFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +++ E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y ++  EM+ +FSDLP A++NTV +  RC F    + P+LP F  K+       E
Sbjct: 230  VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATKDIS-----E 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
             + ++  A  GL  RLA    ++    +       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIKKDAKEGLLARLATKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PVSL QA+ +      A   +           +  +++ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVSLKQALHEVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDSNSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAA+Y 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-------- 822
            VISYQTA++K +YP EFL A + LE++N +KI  F Q+A+   I+I+ P++N        
Sbjct: 765  VISYQTAYLKANYPAEFLVACLNLELNNHDKINFFLQEAKDNGIKIIAPNINISEGYFSV 824

Query: 823  --------------TPCVDFKVGD--------------NRIYYSLAAIKGVGTTTARHIM 854
                           P +D  + +                I ++L AIKGV     + + 
Sbjct: 825  KFSDTVIPHSVKPVIPRLDRGIQEISKDTVVKPRYDIAGAIIFALGAIKGVTPNFGKLVT 884

Query: 855  -EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
             E  A   F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QLL S+  +  Y+ 
Sbjct: 885  DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944

Query: 914  -WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
             + E+  +N+   I   +  + S  I +     + +++ F  E   +G + S HPL  Y+
Sbjct: 945  AYHEEQESNQFSLI---KVSSLSPTILVSSDYADKNTLAFY-EFEAMGLFISNHPLTEYQ 1000

Query: 973  PILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVT--FSEPAKEYE 1028
             I  ++ I    +    +    N + LA ++   Q+K +R  +R  +VT   S+P   +E
Sbjct: 1001 EIFSRLNILNTADLHNNLPDGTNRVNLAGVI---QKKDSRMSARGRFVTLVLSDPENIFE 1057

Query: 1029 ANFF 1032
             + F
Sbjct: 1058 LSIF 1061


>gi|187478729|ref|YP_786753.1| DNA polymerase III subunit alpha [Bordetella avium 197N]
 gi|115423315|emb|CAJ49849.1| DNA polymerase III alpha subunit [Bordetella avium 197N]
          Length = 1163

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/1007 (40%), Positives = 604/1007 (59%), Gaps = 54/1007 (5%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           +++ +   P FVHL+VHS +S+++G + +  ++ ++A   QPA+A+TD +NLF  ++F +
Sbjct: 1   MSEAVTTPPPFVHLRVHSEFSVVDGIVRIPGLIKRVAKLGQPAVALTDLSNLFGLIKFYK 60

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            A  AGI+PI G  + +   ++         PF      ++LV   +GY  L EL+S+ +
Sbjct: 61  SARGAGIKPIAGADVWLSNDEDRD------KPF----RALILVRNNQGYLNLCELLSQAF 110

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
           L++Q K    +   WLQ  G EGLI+L+GG +G I  A    ++  A      +  +F  
Sbjct: 111 LVNQYKGRAEVRREWLQ--GQEGLILLSGGRAGDIGHALDAGNTAGALALARQWAAMFPG 168

Query: 181 RLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             Y+ LQR    G + Y ++  ++LA    LP+VAT+   FL +++++AH+  + +A   
Sbjct: 169 AFYIELQRAGMDGDETYTQA-AMRLAAEAGLPVVATHPVQFLDQDEFQAHEARVCIAEGE 227

Query: 239 VVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
           +++   R  R +P  YL++  EM   F+D+P AL NTVEIA+RC+  L +  P LP F  
Sbjct: 228 ILADPRRVRRFSPQQYLQSSEEMHQRFADVPSALANTVEIAKRCNLSLVLGKPRLPDFPT 287

Query: 298 KE---CDD--IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIA 349
            E    DD  +Q  EE         GLE RLA        +      Y QRL +E + I 
Sbjct: 288 PEGVSLDDYLVQLSEE---------GLEKRLAFLYPDEAERARQRDSYYQRLRWECSTII 338

Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
           +M F GYFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLN
Sbjct: 339 QMGFPGYFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLN 398

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
           P+R+SMPDFDIDFCQD R+ VI YV+ KYG   V+QI TFG+L AKA +RD GR L MPY
Sbjct: 399 PERVSMPDFDIDFCQDNRERVIEYVKLKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPY 458

Query: 470 SQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
              D L KLIP +PA P SL+  + ++  FR+    +  V  L++++Q LEGL R+   H
Sbjct: 459 MFCDGLSKLIPFNPADPWSLERTLKEEPAFRDRYEQEEEVRALVDLAQPLEGLTRNIGMH 518

Query: 529 AAGIVIGDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           A G++I    L+   P+Y +  + +  V+QF+   +E AGL+KFDFLGL+ LT+L  ++ 
Sbjct: 519 AGGVLIAPGKLTDFCPLYCQPGQENYAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVR 578

Query: 588 FLAQRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
           ++ Q        D+  +  DD   Y +L    T  +FQLES GM++ L+ ++P+  EDII
Sbjct: 579 YVRQFNPDQRDFDIMALSLDDPAAYKVLCDANTTAVFQLESRGMKELLKKLRPNTFEDII 638

Query: 645 ALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
           A+++LYRPGP+++ +V  + NRK+G+  +   HP ++  LK T GVI+YQEQVM I+Q++
Sbjct: 639 AMLALYRPGPLESGMVDDFVNRKHGRAAVDYFHPDLEGTLKSTYGVIVYQEQVMLISQII 698

Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            GYSL  AD+LRRAMGKK  EEM K +E F  GA   G    +AV +F+L+ KFA YGFN
Sbjct: 699 GGYSLGGADLLRRAMGKKKPEEMAKHRELFQKGAVDKGHDPDLAVKLFDLMEKFAGYGFN 758

Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           KSH+AAYA+I+YQTAW+K ++P EFLAA+++ +MD+ +K++ FC+DA+   ++++PP VN
Sbjct: 759 KSHSAAYALIAYQTAWLKAYHPAEFLAATLSSDMDDTDKVQIFCRDAQDNGVEVLPPDVN 818

Query: 823 TPCVDFKVGDNR----------IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871
                F   ++           + Y L A+KG G      I+ A  AD PF +L DFC R
Sbjct: 819 ASGYRFAPVEDEHTARGKPPRTMRYGLGAVKGTGQGAVEEILRAREADGPFVNLFDFCRR 878

Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
           V    +NRR +E+L+ AGA D    +R  +L S+    + A+  +  R+    ++F  + 
Sbjct: 879 VGKHAVNRRTIEALIRAGAFDTIESNRAAMLASVGTAMEAAE--QAARSANQASLFGDDS 936

Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                   L K +  N   +   E+  LG+YFSGH  D ++  +R++
Sbjct: 937 SEVVAG-ELTKVAPWNLHTQLTEEKAALGYYFSGHLFDAWRDEVRRI 982


>gi|254524078|ref|ZP_05136133.1| DNA polymerase III, alpha subunit subfamily, putative
           [Stenotrophomonas sp. SKA14]
 gi|219721669|gb|EED40194.1| DNA polymerase III, alpha subunit subfamily, putative
           [Stenotrophomonas sp. SKA14]
          Length = 1196

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1011 (40%), Positives = 607/1011 (60%), Gaps = 65/1011 (6%)

Query: 11  FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56
           FVHL VH+ +SL +  + +               N+L +      PA+A+TD NNLF+ +
Sbjct: 6   FVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRSVELGLPALAVTDLNNLFALV 65

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           +F + A   GI+PI G         ++ +  +G+ P+     + LL    EGY  L  L+
Sbjct: 66  KFYKAAEGVGIKPIAGA--------DVLIAEEGQDPW----RMTLLCRDREGYLSLSRLL 113

Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           +R ++     +  V +   WL+  G   L  L G  S    R       ++AE++L  ++
Sbjct: 114 TRAWMEGHRPEGGVAVHPDWLK-AGNANLFALAGRQS-LAGRLALDGKHELAEQQLADWQ 171

Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           ++FGD L++ L R    G + + +  ++  A    LP+VA+N+  FLS  ++ AH+  + 
Sbjct: 172 RVFGDGLHLELTRTGREGEETFNQFALMA-AGQRGLPVVASNDVRFLSPSNFSAHEARVC 230

Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
           ++   V+    RPR   D  YLK+  EM ++F+D+P+A++NT+ +A RC+  +++    L
Sbjct: 231 ISTGRVLDDPKRPREYSDQQYLKSAEEMCALFADIPDAIDNTLALAERCNIEMRLGTYFL 290

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           P +   + + +    +   R+    GLE RL +  +A G   ++Y +RL+FELN I +M 
Sbjct: 291 PNYPVPDDETLDTWIQKMSRD----GLEERLEKNPLAPGKTREEYFERLEFELNTIIKMG 346

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R
Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERFLNPER 406

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
           +SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L  PY  V
Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGFPYGLV 466

Query: 473 DRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPS----------VDRLLEISQKLEGL 521
           D + KLIPN     + L+ A+        + +A P           V  L++++ +LE L
Sbjct: 467 DGVSKLIPN--ILGIHLKDALGKGKEGPGSEMASPELIQRYETEDDVRDLIDLALQLEDL 524

Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLK 577
            R+A  HA G+VIG  PLS+  P+Y +   +     PVTQF+   +E+ GL+KFDFLGL+
Sbjct: 525 TRNAGKHAGGVVIGPEPLSEFCPLYAEHDENGLGKNPVTQFDKNDVEEVGLVKFDFLGLR 584

Query: 578 TLTLLQKSLDFLAQR----GVK-VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQA 631
           TLT++  ++  + +R    G+  VD++ IP DD  TY  +   G  G +FQ ESSGMR+ 
Sbjct: 585 TLTIIDWAVKAINKRHERAGIPPVDIAAIPLDDTPTYKDIFANGNTGAVFQFESSGMRRL 644

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
           L+  +PD  ED+IALVSLYRPGP+D I  +N RK+G+E+I+   P  + +LK+T G+++Y
Sbjct: 645 LKDARPDRFEDLIALVSLYRPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGIMVY 704

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QEQVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K+G+ +  A  IF+
Sbjct: 705 QEQVMQMAQIVGGYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKDGVDEAKADAIFD 764

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
           L+ KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ ++DN +K+  F  + R 
Sbjct: 765 LMEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDLDNTDKVVGFLDEVRN 824

Query: 812 FNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFC 869
             + ++PP VN     F+ V  + I Y L AIKGVG      ++ E      +  L DFC
Sbjct: 825 LGLTVLPPKVNQSAFMFEAVTPDTIQYGLGAIKGVGQGACEAVVDERLKGGEYKDLLDFC 884

Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
           +RV S KLNRR LE+++  GALD  G++R  L+  L  + K    + + R +   ++F  
Sbjct: 885 TRVGSAKLNRRTLEAMINCGALDELGHNRASLMLQLPEVIKATDQMARERASGQNSLFGG 944

Query: 930 EKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKM 978
              + +  I L+    E   +  R   E+  LGFY SGHP D ++  +R +
Sbjct: 945 PDPS-ATTIQLDLPEAEEWPLLQRLNGERDTLGFYLSGHPFDPWRDDVRDL 994


>gi|71276388|ref|ZP_00652665.1| DNA polymerase III alpha subunit [Xylella fastidiosa Dixon]
 gi|71162850|gb|EAO12575.1| DNA polymerase III alpha subunit [Xylella fastidiosa Dixon]
          Length = 1193

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1054 (39%), Positives = 632/1054 (59%), Gaps = 74/1054 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLF 53
            + SFVHL +H+ +SL +  + +               N+L +      PA+A+TD NNLF
Sbjct: 3    TSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNLF 62

Query: 54   SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
            + ++F + A   GI+PI G  L I   ++        TP+     + LL     GY  L 
Sbjct: 63   ALIKFYKAAETVGIKPISGADLLIAEPEH--------TPW----GMTLLCRDHTGYLNLS 110

Query: 114  ELVSRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
            +L+SR +L     +  V +   W+++   + L  L G  S  + + F    + +AE++L 
Sbjct: 111  QLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIGRHS-LVGQLFAKGRADLAEQQLA 168

Query: 173  TFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             ++++FGD L++ L R  R  +       +Q+A    +P++A+N+  FL   D+ AH+  
Sbjct: 169  DWQRVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEAR 228

Query: 232  MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +A   ++    RPR  +   YL++  EM ++F+D+P+AL+NT  +A+RC+  +++   
Sbjct: 229  VCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGTY 288

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             LP +     + +    ++ +R ++  GLE RL +  +A G   +DY  RL+FEL+ I +
Sbjct: 289  FLPNYPVPNDETL----DSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTIIK 344

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M FSGYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP
Sbjct: 345  MGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLNP 404

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFDIDFC +RRDEVI YV  KYG ERV+QIIT+G++ AKA +RDVGR L  PY 
Sbjct: 405  ERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYG 464

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFRE---ARL-----ADPSVDRLLEISQKLEGLY 522
             VD + KLIP+     ++L+    +    +   A L     A+  V  LL ++++LE L 
Sbjct: 465  LVDSVAKLIPSTLG--ITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLT 522

Query: 523  RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PL++  P++     + R   PVTQF+   +E+ GL+KFDFLGL+T
Sbjct: 523  RNAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRT 582

Query: 579  LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  + +R  +     VD++ +P DD  TY  +  +  T  +FQ ESSGMR+ L
Sbjct: 583  LTIIDWAVKAINKRHARACIDPVDITALPLDDLPTYKDIFASGNTSAVFQFESSGMRRLL 642

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +  RK+G ++ +   P    +LK+T G+++YQ
Sbjct: 643  KDARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQ 702

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+    A  IF+L
Sbjct: 703  EQVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDL 762

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  +AR  
Sbjct: 763  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNL 822

Query: 813  NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
            N++++ P++N     F+    + I Y L AIKGVG +    I++      P+ SL DFC+
Sbjct: 823  NLKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCT 882

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929
            RV S KLNRR LE+++ AGALD  G +R  ++  L  + K  + + + R +   ++F + 
Sbjct: 883  RVTSAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNA 942

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVA 988
            + GT + ++ L +      +     E+  LG YFSGHP D Y+  ++++ G      ++ 
Sbjct: 943  DPGTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALE 1002

Query: 989  TI-----RGN----------NIRLAAMVVSKQQK 1007
             I     RGN          N  LA +VVS ++K
Sbjct: 1003 RILSSQQRGNGEKRTWQPEVNTILAGLVVSVRRK 1036


>gi|260913108|ref|ZP_05919590.1| DNA-directed DNA polymerase III alpha subunit [Pasteurella dagmatis
            ATCC 43325]
 gi|260632695|gb|EEX50864.1| DNA-directed DNA polymerase III alpha subunit [Pasteurella dagmatis
            ATCC 43325]
          Length = 1143

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1045 (40%), Positives = 607/1045 (58%), Gaps = 66/1045 (6%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            ++ G   +  ++     +   A+ +TD  N    + F  +A ++GI+PIIG  + +    
Sbjct: 1    MINGIAKVKPLVKACVENNMVAMGLTDFTNFCGLVRFYGEALSSGIKPIIGADVLV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV-RICLSWLQEIG 140
              K    G   F     + LL     GYQ +  L+S+ Y  ++G Q +  I   WL E  
Sbjct: 57   --KSALCGDERF----ELTLLAKNNTGYQNITLLLSKAY--ERGYQDLPYIDQEWLIE-H 107

Query: 141  TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV 200
             EGLI+L+GG +G + +     +    E  +  +++ F +  Y++L R     R+ E + 
Sbjct: 108  REGLIILSGGHNGDVGKKLLKGNQAEIESAVHFYQEYFPEHFYLSLSRT---GRHEEERY 164

Query: 201  VQLAYTHE----LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLK 255
            V LA  +     LP+VATN+ LFL EED+EAH++ +A+  S  +    RP++ T   Y +
Sbjct: 165  VSLAIKYAEQKGLPVVATNDVLFLEEEDFEAHEIRVAIHDSYTLDDPKRPKIYTSQQYFR 224

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
            +  EM  +FSD+P ALENT+ IA+RC+  +++    LP+F   +        E  L  K+
Sbjct: 225  SEQEMCELFSDVPSALENTLLIAQRCNVTIRLGEYFLPKFPTGDLS-----TEAFLVKKS 279

Query: 316  VAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
              GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+I
Sbjct: 280  KEGLEERLQVLFPDEKVRQERRSEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDI 339

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
            PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D RD VI 
Sbjct: 340  PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 399

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A 
Sbjct: 400  HVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAF 458

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
            A + + +    +D  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D    
Sbjct: 459  AAEPQLQVVYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPGLITDFSPLYCDSEGK 518

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHE 607
             PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R  K     VD+S IP DD E
Sbjct: 519  HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINTRLAKEGKPLVDISTIPLDDPE 578

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665
            ++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+++ +V N  +RK
Sbjct: 579  SFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLESGMVQNFIDRK 638

Query: 666  NGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +G E +        H  + P+L+ T GVI+YQEQVMQIAQ L+GY+L  AD+LRRAMGKK
Sbjct: 639  HGNEPVAYPDPEYQHESLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKK 698

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM  Q+E F  GA + G+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K
Sbjct: 699  KPEEMAAQREIFEKGAIQKGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 758

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSL 839
            THYP EF+AA MT EMDN +KI     +  +  +++ PP +NT    F V +N  I Y +
Sbjct: 759  THYPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVAPPDINTGKHHFSVNENSEIVYGI 818

Query: 840  AAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKGVG      ++ A      F  L D C+RVD KK+NRR  ESL+ +GA D  G  R
Sbjct: 819  GAIKGVGEGPIEALISAREQGGIFKDLFDLCARVDLKKINRRTFESLILSGAFDKLGPHR 878

Query: 899  MQLLQSLDNIQKYAQWVEKNR-----------TNKHENIFAHEKGTFSDKITLEKFSVEN 947
              L ++L++  K +    K+            T +HE++   EK   S     EK     
Sbjct: 879  AALSKNLEDALKASDQHAKDEALGQTDMFGVLTERHEDV---EKAYASTPRWSEK----- 930

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              V  + E+  LG Y S HP+  Y   L        ++     RG    ++ +VV+ +  
Sbjct: 931  --VILDGERETLGLYLSSHPISPYIKELEHYSSTRLKDLAPNYRGQLSTVSGLVVASRVA 988

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T+KG+R+G  T  + +   +   F
Sbjct: 989  ITKKGNRLGIATLDDRSGRLDITLF 1013


>gi|34581196|ref|ZP_00142676.1| DNA polymerase III alpha chain [Rickettsia sibirica 246]
 gi|28262581|gb|EAA26085.1| DNA polymerase III alpha chain [Rickettsia sibirica 246]
          Length = 1181

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1084 (38%), Positives = 632/1084 (58%), Gaps = 85/1084 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++  ++++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I            K        I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNI------------KYDIDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L E   EGLI L   + G + +     + + A       +++ GDR Y  + R
Sbjct: 111  DHIGFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +++ E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y ++  EM+ +FSDLP A++NTV +  RC F    + P+LP F  K+       E
Sbjct: 230  VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATKDIS-----E 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
             + ++  A  GL  RLA    ++    +       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIKKDAKEGLLARLATKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PVSL QA+ +      A   +           +  +++ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHELLQPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAA+Y 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-------- 822
            VISYQTA++K +YP  FL A + LE++N +KI  F Q+A+   I+I+ P++N        
Sbjct: 765  VISYQTAYLKANYPAAFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824

Query: 823  --------------TPCVDFKVGD--------------NRIYYSLAAIKGVGTTTARHIM 854
                           P +D  + +                I ++L AIKGV     + + 
Sbjct: 825  KFSDTVIPHSVKPVIPRLDRGIQEISKDTVVKPRCDIAGAIIFALGAIKGVTPNFGKLVT 884

Query: 855  -EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
             E  A   F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QLL S+  +  Y+ 
Sbjct: 885  DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944

Query: 914  -WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
             + E+  +N+   I   +  + S  I +     + +++ F  E   +G + S HPL  Y+
Sbjct: 945  AYHEEQESNQFSLI---KVSSLSPTILVSSDYADKNTLAF-YEFEAMGLFISNHPLTEYQ 1000

Query: 973  PILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVT--FSEPAKEYE 1028
             I  ++ I    +    +    N + LA ++   Q+K +R  +R  +VT   S+P   +E
Sbjct: 1001 EIFSRLNILNIADLHNNLPDGTNRVNLAGVI---QKKDSRMSARGRFVTLVLSDPENIFE 1057

Query: 1029 ANFF 1032
             + F
Sbjct: 1058 LSIF 1061


>gi|327399548|ref|YP_004340417.1| DNA polymerase III subunit alpha [Hippea maritima DSM 10411]
 gi|327182177|gb|AEA34358.1| DNA polymerase III, alpha subunit [Hippea maritima DSM 10411]
          Length = 1133

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/1035 (39%), Positives = 625/1035 (60%), Gaps = 36/1035 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  HS YSLL+GA  + ++++K      PA+A+TD  N+F ALEF + A + GI+P
Sbjct: 2    AFVHLHNHSEYSLLDGASRIKHMVEKAKNSGMPAVALTDHGNMFGALEFYKTAKSNGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +  I          +G         I LL    +GY+ ++ L S M  L       
Sbjct: 62   ILGFEGYISPTTLDDKQTKGNY------HITLLAKNKKGYENIMYLCS-MAFLKGFYYKP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            RI  + L+E  +EG+I  +    G +      N  + A+K +  +K++FG +  ++ + R
Sbjct: 115  RIDKNLLRE-HSEGIIAGSACLHGEVQLRLLDNDFEGAKKVVQEYKEIFGKENFFLEIMR 173

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+ R + ++++L    + P+VATN+  +L++ED  A D L+ V  +  +  +DR +
Sbjct: 174  HGLEDQQRIDKEIIRLGLETDTPIVATNDCHYLNKEDAIAQDALLCVQTNKHLDDQDRMK 233

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + + + Y K   EM+ +F D PE + N+  IA  C+  L++     P +   +  D    
Sbjct: 234  MGSQEFYFKTEEEMLEVFKDNPEFVHNSKVIADMCNVELELGKLAPPHYRTPDGSD---- 289

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E+  LR  A  GLE + A     K    + Y++RL+ EL +I +M FSGYFLIV DF+ +
Sbjct: 290  EKEYLRRLAYKGLEEKTAGFDNGK---KELYKKRLEHELAIIEQMGFSGYFLIVWDFVNY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+N IPVGPGRGS AGS+ +Y++ ITDIDP++++LLFERFLNP+R++MPD D+DFC +R
Sbjct: 347  AKRNGIPVGPGRGSAAGSLVSYSIGITDIDPIKYNLLFERFLNPERVTMPDIDVDFCAER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV+ KYG   VAQ+ITFG++ AKA +RDV R +  PY + DR+ K+IPN     
Sbjct: 407  RDEVIHYVREKYGEYNVAQVITFGTMGAKAVVRDVARVMGFPYKEADRIAKMIPNGEDLD 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                AI  +++ ++    D +V +L EIS+ LEG+ RHAS HAAG+VI   P+ +  P+Y
Sbjct: 467  ---GAIKSNTQLKQEIEKDDNVKKLFEISKTLEGVKRHASIHAAGVVISTEPIYKSCPLY 523

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            +    D    QF+  ++E  GLIKFDFLGLK LT++  ++  +   G   D+S IP DD 
Sbjct: 524  KAPGEDTIAVQFSKDFLEDIGLIKFDFLGLKNLTVIDTTVKLI---GNGFDISKIPLDDK 580

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
            ETY LL    TLG+FQLESSGM++ +  ++P   ED+IALV+LYRPGP+ + +V  + +R
Sbjct: 581  ETYKLLQKGDTLGVFQLESSGMQRLIMDLKPTVFEDLIALVALYRPGPLGSGMVQDFIDR 640

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK+ I    P ++ +LK+T G+I+YQEQVMQIA  L+GYSL EAD+LRRAMGKK KE 
Sbjct: 641  KHGKKPIEYPLPELEGILKDTYGIILYQEQVMQIASKLAGYSLGEADILRRAMGKKKKEV 700

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MD+Q+  F+  A + G+SK  A  IF+L+AKFA+YGFNKSH+AAYA I+YQTA++K HYP
Sbjct: 701  MDQQRGIFVKRAVERGVSKEKAEEIFDLMAKFAEYGFNKSHSAAYAYIAYQTAYLKAHYP 760

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLA 840
              F++A +T E +N + I K+ ++  +  I ++PP +N    DF V    G   I +  +
Sbjct: 761  AYFMSALLTSEKNNTDNIAKYIEECNRMKITVLPPDINDSFHDFAVAEKDGKKVIRFGFS 820

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIK VG     +I+E   +  F+S+ DF  R D++K+N++VLESL+ +G  D    +R  
Sbjct: 821  AIKNVGDAAIENIIEIRKESKFESIFDFLKRTDTRKVNKKVLESLIKSGCFDSLHQNRAT 880

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR--FENEQRV 958
            LL S+D +     WV  N    ++ + A    T  ++   E   VE  +     E E+ +
Sbjct: 881  LLASVDVL---LDWVSTNAKKANKKMVALFGSTKQEEAYPELIDVEELTQEKILEYEREL 937

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LGF+ S +PL  Y+ ++  + I    E+ +T+    + +A + V+ ++ KT++   +  V
Sbjct: 938  LGFFVSSNPLSKYENMVNAV-ITADSETASTVFDKEVVMAGIPVAIRKMKTKRKESMAIV 996

Query: 1019 TFSEPAKEYEANFFP 1033
             F +    +EA  FP
Sbjct: 997  KFMDLKGTFEATVFP 1011


>gi|329893785|ref|ZP_08269873.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC3088]
 gi|328923508|gb|EGG30822.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC3088]
          Length = 1160

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1049 (39%), Positives = 611/1049 (58%), Gaps = 47/1049 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ YSL++G + +  ++ K+A    PA+A+TD  N F  ++  + A  AG++PI
Sbjct: 4    FVHLRLHTEYSLIDGIVRIKPLMSKVAELGMPAVAVTDFCNFFGLVKAYKAALGAGVKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G    I     L  T++       +P + LLV++ EGY  L  L+S+ Y   Q      
Sbjct: 64   FGADFLIS---GLAETDR------ALP-LTLLVTSLEGYANLTRLISKAYQEGQRLGVPY 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            I   WL E    GLI L+GG  G + +    N   +A +    +  LF  R Y+ +QR  
Sbjct: 114  IEYEWLTEF-QGGLIALSGGREGQLGQLLLANKQDLALEHASQWMALFPGRFYIEIQRTG 172

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     + V+LA   + P+VATN+  FL  +++EAH+  + +     +    RPR  
Sbjct: 173  RDNEEPYIHEAVKLASALQCPIVATNDVRFLQADEFEAHEARVCIGEGRTLDDPRRPRNY 232

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CDDIQK 305
            T   YL++  EM  +F DLPEAL NTVEIA+RC+ IL +  P LP +   E    D   +
Sbjct: 233  TDQQYLRSPQEMAELFQDLPEALANTVEIAKRCNLILNLGTPYLPEYPVPEGMTMDQYFR 292

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +  +E   + + G   R+        +  QDY  RL+ EL++I +M F GYFLIV DFI+
Sbjct: 293  QLSHEGLAQRIGGQGERIPD----PRFSHQDYIDRLNIELDIIIQMGFPGYFLIVMDFIR 348

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+++IPVGPGRGSGAGS+ AY L ITD+DPL++ LLFERFLNP+R+SMPDFD+DFC D
Sbjct: 349  WAKEHDIPVGPGRGSGAGSLVAYVLLITDLDPLQYDLLFERFLNPERVSMPDFDVDFCMD 408

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI YV   YG + V+QIITFG++ AKA +RDV R     Y   D+L KLIP +   
Sbjct: 409  RRDEVIDYVATHYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKLIPFEVGM 468

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++ +A+  +   R+    D     + +++ +LEG+ R+   HA G+VI    L    P+
Sbjct: 469  TLA-KAVEQEEALRDFLRDDSQAQEIWDMACQLEGITRNVGKHAGGVVIAPSKLVDFSPL 527

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KVDLSL 600
            Y D      VTQ++   +E AGL+KFDFLGL+TLT++  ++  +  R V      +D++ 
Sbjct: 528  YCDETGGGLVTQYDKNDVEDAGLVKFDFLGLRTLTIIAWAIKMINPRRVAHGEQALDINQ 587

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD+  + LL    T  +FQLES GM+  ++ ++PD  EDIIALV+L+RPGP+ + +V
Sbjct: 588  IPLDDNAVFQLLQQADTTAVFQLESRGMKDLIKRLRPDNFEDIIALVALFRPGPLQSGMV 647

Query: 661  YN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             N  NRK+G+E I        H  + P+L  T G+I+YQEQVMQIAQ+L+GY+L  AD+L
Sbjct: 648  DNFINRKHGREAIAYPDAHYQHESLKPILDPTYGIILYQEQVMQIAQVLAGYTLGGADML 707

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM KQ+E F SGA++ GI   +A+ IF+L+ KFA YGFNKSH+AAYA++S
Sbjct: 708  RRAMGKKKPEEMAKQREVFQSGAAERGIDPELAIRIFDLVEKFAGYGFNKSHSAAYALVS 767

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD- 832
            YQTAW+K HYP EF+AA M+ E+ N +KI  F ++ R   + +  P VN     F V D 
Sbjct: 768  YQTAWLKVHYPAEFMAAVMSSELQNTDKIVIFIEECRAMGLPLKLPDVNEGRYAFTVNDL 827

Query: 833  NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I Y L AIKG+G      I+ E  A+ PF  L DFC+R D + LN+R +E+LV AGA 
Sbjct: 828  GEIVYGLGAIKGLGEGPVEAILRERDANGPFRDLFDFCARTDRRLLNKRAIEALVRAGAF 887

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVE--- 946
            D     R  L+ ++D+  K A+    N  +  +++F         +D      F      
Sbjct: 888  DSLSEPRWVLMAAVDDAVKAAEQKASNTASGIDDLFGEVMPSAPSADGNVYAAFRSARPW 947

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN---NIRLAAMVVS 1003
            +   R   E+  LG Y +GHP+D Y+  +R+         +A +R +   + R+  ++V+
Sbjct: 948  SGRERLSGEKDTLGLYVTGHPIDDYEREIRQF----VPTKIADLRADGKSSQRIVGLIVA 1003

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +  KT++G  +  VT  + +   EA  +
Sbjct: 1004 VRTMKTKRGDTMAIVTLDDRSARIEATVY 1032


>gi|229587140|ref|YP_002845641.1| DNA polymerase III subunit alpha [Rickettsia africae ESF-5]
 gi|228022190|gb|ACP53898.1| DNA polymerase III alpha chain [Rickettsia africae ESF-5]
          Length = 1181

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/1084 (38%), Positives = 631/1084 (58%), Gaps = 85/1084 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++  ++++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I            K        I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNI------------KYDIDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L E   EGLI L   + G + +     +   A       +++ GDR Y  + R
Sbjct: 111  DHIDFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEAKAMLFARKLQEILGDRFYFEIMR 169

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +++ E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y ++  EM+ +FSDLP A++NTV +  RC F    + P+LP F  K+       E
Sbjct: 230  VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATKDI-----SE 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
             + ++  A  GL  RLA    ++    +       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIKKDAKEGLLARLATKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PVSL QA+ +      A   +           +  +++ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ V  ++MK+ E AGL+KFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYSEIAGLVKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHELLQPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAA+Y 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-------- 822
            VISYQTA++K +YP  FL A + LE++N +KI  F Q+A+   I+I+ P++N        
Sbjct: 765  VISYQTAYLKANYPAAFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824

Query: 823  --------------TPCVDFKVGD--------------NRIYYSLAAIKGVGTTTARHIM 854
                           P +D  + +                I ++L AIKGV     + + 
Sbjct: 825  KFSDTVIPHSVKPVIPRLDRGIQEISKDTVVKPRCDIAGAIIFALGAIKGVTPNFGKLVT 884

Query: 855  -EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
             E  A   F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QLL S+  +  Y+ 
Sbjct: 885  DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944

Query: 914  -WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
             + E+  +N+   I   +  + S  I +     + +++ F  E   +G + S HPL  Y+
Sbjct: 945  AYHEEQESNQFSLI---KVSSLSPTILVSSDYADKNTLAFY-EFEAMGLFISNHPLTEYQ 1000

Query: 973  PILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVT--FSEPAKEYE 1028
             I  ++ I    +    +    N + LA ++   Q+K +R  +R  +VT   S+P   +E
Sbjct: 1001 AIFSRLNILNTADLHNNLPDGTNRVNLAGVI---QKKDSRMSARGRFVTLVLSDPENIFE 1057

Query: 1029 ANFF 1032
             + F
Sbjct: 1058 LSIF 1061


>gi|134296501|ref|YP_001120236.1| DNA polymerase III subunit alpha [Burkholderia vietnamiensis G4]
 gi|134139658|gb|ABO55401.1| DNA polymerase III, alpha subunit [Burkholderia vietnamiensis G4]
          Length = 1177

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1032 (40%), Positives = 614/1032 (59%), Gaps = 60/1032 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F Q+A   GI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNPDDRDKPS--RLLLLVKDKTGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL    ++GL+ L+G   G I  A    + + A +    + ++F    Y+ LQR
Sbjct: 114  AELDASWLDGELSQGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAEVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q   LA + +LP+VAT+   F++E+D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAATLAASLQLPVVATHPMQFMTEDDFTAHEARVCISEGDMLANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T   Y + + +MV++F+D+P A+ NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFTTAQYFRTQDDMVALFADIPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RL Q       +      Y +RL+FE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSKEGLEKRLEQLYPDVAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +    K D SL
Sbjct: 529  FCPLYTQGDDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPTKADWSL 588

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  ++ LL    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPASFQLLKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-------VG 831
            +K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+         
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVTNNLVVLPPDINQSHYRFEPVAQADGTR 828

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L A+KG G      I+ A  +KPF  L DFC RVD + +NRR +E+L+ AGA 
Sbjct: 829  SRTIRYGLGAVKGSGQNAIEEILRAREEKPFADLFDFCERVDRRIVNRRTVEALIRAGAF 888

Query: 892  DCFGYSRMQLLQSL----------DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            D    +R Q+L S+                A   +    + H +    E   + DK    
Sbjct: 889  DSLNPNRAQMLASVPLAMEAAEQAAANAMQAGLFDMGAESPHAHALVDEP-AWDDK---- 943

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAM 1000
                     R + E+  LGFY SGH  D Y+  +R+       + V  ++ G +  +A +
Sbjct: 944  --------RRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKVGDLKEGRDKLVAGI 991

Query: 1001 VVSKQQKKTRKG 1012
            + S + + T++G
Sbjct: 992  IASLRTQMTQRG 1003


>gi|261855201|ref|YP_003262484.1| DNA polymerase III subunit alpha [Halothiobacillus neapolitanus c2]
 gi|261835670|gb|ACX95437.1| DNA polymerase III, alpha subunit [Halothiobacillus neapolitanus
           c2]
          Length = 1168

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/993 (40%), Positives = 584/993 (58%), Gaps = 42/993 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFVHL +H+ +SL++G L +  +L        PA+A+TD  NLF+ ++F + A  +GI+P
Sbjct: 2   SFVHLHLHTEFSLIDGTLRIKPMLAAAKERGLPALALTDQANLFAMVKFYEAARKSGIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I+G        D L +   G TP+     +VLL     G++ L EL+SR Y   Q +   
Sbjct: 62  ILGA-------DCLVVDEPGSTPY----RVVLLAQNNLGFRHLTELLSRGYCEGQIQDRP 110

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            +   WL +    GLI L+GG  G I +      ++  +  +  + + F DR Y+ L R 
Sbjct: 111 MLRREWLTQEQCAGLIALSGGHLGEIGQLLLHGKARERKAAIKFWTERFPDRFYLELTRC 170

Query: 190 RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
              D  +     V+LA   +LP+VATN+  FL +E++EAH+V + +    V+    RP  
Sbjct: 171 GRPDEEKYLHAAVELAEQAQLPVVATNDVRFLDQENFEAHEVRVCIQQGRVLDDPRRPHD 230

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            T   YL+   EM ++F+D+PEA+EN++ +A RC+  LQ+    LP F     +     E
Sbjct: 231 YTALQYLRPADEMQALFADIPEAIENSLAVAERCNVTLQLGKNFLPNFPTPNGE----TE 286

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + LR  +  GL  R  +         + YR+RL+ EL+VI +M FSGYFLIVADFIQWA
Sbjct: 287 ADYLRTLSEQGLAHRFER---VPAEQHEAYRERLNIELDVIIQMGFSGYFLIVADFIQWA 343

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           K+  IPVGPGRGSGAGS+ A+AL ITDIDP+ + LLFERFLNP+R+SMPDFDIDFC + R
Sbjct: 344 KRQGIPVGPGRGSGAGSLVAWALLITDIDPIPYDLLFERFLNPERVSMPDFDIDFCMEGR 403

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           D VI YV  +YG   V+QI T G++ AKA +RDVGR +  PY  VDR+ KLIP  P   V
Sbjct: 404 DRVIDYVAERYGRAAVSQIATHGTMAAKAVVRDVGRVMSYPYGFVDRIAKLIPMKPGLDV 463

Query: 488 SLQ-AIADDSR-----------FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
           +L+ A+    R           FR+    D  V  ++++   LEGL R+   HA G+VI 
Sbjct: 464 TLEDALGRTERSQKEQERFSQEFRDLYERDEEVRAIVDMGMALEGLSRNVGKHAGGVVIA 523

Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
              L+   PMY +       +Q +   +E  GL+KFDFLGL+ LT++  +L  +     K
Sbjct: 524 PSKLTDFTPMYCESNGASAASQLDKDDVEAVGLVKFDFLGLRNLTIIDWALGSINATRQK 583

Query: 596 -----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                VD+++IP DD  +++LL    T  +FQLES GM+  +  +QPD  EDIIALV+L+
Sbjct: 584 VGKEPVDITVIPLDDKPSFNLLKRCETTAVFQLESRGMKDLIRRLQPDTFEDIIALVALF 643

Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
           RPGP+ + +V  +  RK G++KI  +HP +  +LK T GVI+YQEQVMQIAQ+L+GY+L 
Sbjct: 644 RPGPLQSGMVDDFILRKKGEQKIEYLHPWLTDVLKPTYGVIVYQEQVMQIAQILAGYTLG 703

Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD+LRRAMGKK  EEM KQ+E F+ GA    +  T A  IF+L+ KFA YGFNKSH+AA
Sbjct: 704 GADLLRRAMGKKKPEEMAKQREIFLEGAKSKQVDPTQAGYIFDLMEKFAGYGFNKSHSAA 763

Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
           YA+++YQTAW+K HYP  F+AA ++ +MDN +KI     + ++  + ++PP VN     F
Sbjct: 764 YALVAYQTAWLKAHYPAHFMAAVLSADMDNTDKIVGLIGECQRMGLNVIPPDVNHCAYKF 823

Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           +  D + + Y L AIKGVG    + I+E   A  PF  + DFC RV S+ LN+RVLE++V
Sbjct: 824 QALDEHTVVYGLGAIKGVGEGVIQKIVEERQAGAPFVDMNDFCHRVGSQALNKRVLEAMV 883

Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSV 945
            AGALD  G +R  L   + +  K A  ++        ++F   +    + ++ +     
Sbjct: 884 LAGALDTLGPNRASLFAHIPDAMKAASQIQAAEAAGMGDLFGGFDAPETAIRVPIPALEP 943

Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
              + +   E+  LG Y +GHP+  ++  L+ +
Sbjct: 944 WPDAEQLRKEKDTLGLYLTGHPIHAFRDELKSL 976


>gi|186476833|ref|YP_001858303.1| DNA polymerase III subunit alpha [Burkholderia phymatum STM815]
 gi|184193292|gb|ACC71257.1| DNA polymerase III, alpha subunit [Burkholderia phymatum STM815]
          Length = 1187

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1033 (39%), Positives = 616/1033 (59%), Gaps = 62/1033 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + +++++D  A D Q A+A+TD  N F  + F ++A   G++
Sbjct: 7    PRFVHLRVHSEFSIADGIVRIDDVVDAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 67   PIAGC--------DVWITNPDDRDKPS--RLLLLVRNKTGYLNLCELLSKAWLTNQYRGR 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  +WL+    EGL+ L+G   G +  A    + + A++    + ++F +  Y+ LQR
Sbjct: 117  AEVETAWLESGLAEGLLALSGAQHGDVGLALAAGNQEAAQRNAQRWAQIFPNGFYIELQR 176

Query: 189  --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
                G + Y + Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++   R 
Sbjct: 177  GGQAGAEAYVQ-QAVALAASLKLPVVATHPLQFMTPDDFTAHEARVCISEGDILANPRRQ 235

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T D Y + + EM+++++D+P A+ NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 236  KRFTTDQYFRTQDEMIALYADIPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 293

Query: 306  EEENELRNKAVAGLEVRLAQ--------GAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
              ++ L   +  GLE RL Q         A  +GY+A     RLDFE   I +M F GYF
Sbjct: 294  --DDYLVQLSKEGLEKRLEQLFPEQAERDAQREGYYA-----RLDFECGTIIKMGFPGYF 346

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPD
Sbjct: 347  LIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPD 406

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + K
Sbjct: 407  FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAK 466

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   V++  A+ ++   +E    +  V +LLE++Q++EGL R+   HA G++I  
Sbjct: 467  LIPFKPGKHVTIADAMKEEPLLKERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAP 526

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRG 593
              L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L    
Sbjct: 527  GKLTDFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 586

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ +P DD   + +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPG
Sbjct: 587  ENWSLAQVPLDDPAAFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPG 646

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+L
Sbjct: 647  PMDLIPSFCARKHGRETVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 706

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM K +E F  GA++NG+++  A   F+L+ KFA YGFNKSHAAAYA+++
Sbjct: 707  RRAMGKKKPEEMAKHREIFAEGAARNGLTREKADETFDLMEKFAGYGFNKSHAAAYALLA 766

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--- 830
            Y TAW+K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP +N     F+    
Sbjct: 767  YHTAWLKAHHPAEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDINLSAYRFEPVAE 826

Query: 831  GDNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             D +    I Y L AIKG G      I+ A  + PF  + DFC+R+D + +NRR +E+L+
Sbjct: 827  ADGKRSRTIRYGLGAIKGSGQNAIEEILRAREEGPFVDIFDFCNRIDRRVVNRRTIEALI 886

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF------SDKITL 940
             AGA D    +R QL+ S+    + A     N         A + G F      S    L
Sbjct: 887  RAGAFDSLHENRAQLIASVSLAMEAADQASAN---------AMQAGLFDIGDAPSQGHEL 937

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAA 999
                      R + E+  LGFY SGH  D YK  +R+       + +  ++ G +  +A 
Sbjct: 938  VDEPAWPDKRRLQEEKTALGFYLSGHLFDAYKDEVRRF----VRQKIGELKEGRDKLVAG 993

Query: 1000 MVVSKQQKKTRKG 1012
            ++VS + + T++G
Sbjct: 994  VIVSLRTQMTQRG 1006


>gi|71898629|ref|ZP_00680799.1| DNA polymerase III alpha subunit [Xylella fastidiosa Ann-1]
 gi|71731576|gb|EAO33637.1| DNA polymerase III alpha subunit [Xylella fastidiosa Ann-1]
          Length = 1193

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1054 (39%), Positives = 632/1054 (59%), Gaps = 74/1054 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLF 53
            + SFVHL +H+ +SL +  + +               N+L +      PA+A+TD NNLF
Sbjct: 3    TSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNLF 62

Query: 54   SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
            + ++F + A   GI+PI G  L I   ++        TP+     + LL     GY  L 
Sbjct: 63   ALIKFYKAAETVGIKPISGADLLIAEPEH--------TPW----GMTLLCRDHTGYLNLS 110

Query: 114  ELVSRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
            +L+SR +L     +  V +   W+++   + L  L G  S  + + F    + +AE++L 
Sbjct: 111  QLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIGRHS-LVGQLFAKGRADLAEQQLA 168

Query: 173  TFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             ++++FGD L++ L R  R  +       +Q+A    +P++A+N+  FL   D+ AH+  
Sbjct: 169  DWQRVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEAR 228

Query: 232  MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +A   ++    RPR  +   YL++  EM ++F+D+P+AL+NT  +A+RC+  +++   
Sbjct: 229  VCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGTY 288

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             LP +     + +    ++ +R ++  GLE RL +  +A G   +DY  RL+FEL+ I +
Sbjct: 289  FLPNYPVPNDETL----DSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTIIK 344

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M FSGYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP
Sbjct: 345  MGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLNP 404

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFDIDFC +RRDEVI YV  KYG ERV+QIIT+G++ AKA +RDVGR L  PY 
Sbjct: 405  ERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYG 464

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFRE---ARL-----ADPSVDRLLEISQKLEGLY 522
             VD + KLIP+     ++L+    +    +   A L     A+  V  LL ++++LE L 
Sbjct: 465  LVDSVAKLIPSTLG--ITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLT 522

Query: 523  RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PL++  P++     + R   PVTQF+   +E+ GL+KFDFLGL+T
Sbjct: 523  RNAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRT 582

Query: 579  LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  + +R  +     VD++ +P DD  TY  +  +  T  +FQ ESSGMR+ L
Sbjct: 583  LTIIDWAVKAINKRHARACIDPVDITALPLDDIPTYKDVFASGNTSAVFQFESSGMRRLL 642

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +  RK+G ++ +   P    +LK+T G+++YQ
Sbjct: 643  KDARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQ 702

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+    A  IF+L
Sbjct: 703  EQVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDL 762

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  +AR  
Sbjct: 763  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNL 822

Query: 813  NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
            N++++ P++N     F+    + I Y L AIKGVG +    I++      P+ SL DFC+
Sbjct: 823  NLKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCT 882

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929
            RV S KLNRR LE+++ AGALD  G +R  ++  L  + K  + + + R +   ++F + 
Sbjct: 883  RVTSAKLNRRALEAMIQAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNA 942

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVA 988
            + GT + ++ L +      +     E+  LG YFSGHP D Y+  ++++ G      ++ 
Sbjct: 943  DPGTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALE 1002

Query: 989  TI-----RGN----------NIRLAAMVVSKQQK 1007
             I     RGN          N  LA +VVS ++K
Sbjct: 1003 RILGSQQRGNGEKRTWQSEVNTILAGLVVSVRRK 1036


>gi|311105199|ref|YP_003978052.1| DNA polymerase III subunit alpha 1 [Achromobacter xylosoxidans A8]
 gi|310759888|gb|ADP15337.1| DNA polymerase III, alpha subunit 1 [Achromobacter xylosoxidans A8]
          Length = 1164

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/1000 (40%), Positives = 602/1000 (60%), Gaps = 56/1000 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P FVHL+VHS +S+++G + + +++ ++A   QPA+A+TD +NLF  ++F + A  AGI+
Sbjct: 10  PPFVHLRVHSEFSVVDGLVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYKGARGAGIK 69

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           PI GC + +   D+           P  P  ++LLV   +GY  L EL+S+ +L +QGK 
Sbjct: 70  PIAGCDVWLSNDDD-----------PAKPFRLLLLVRNHQGYLNLCELLSKAFLTNQGKG 118

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              I   WLQ  G EGLI L+GG  G + +A    ++  A      +  LF    Y+ LQ
Sbjct: 119 RAEIRREWLQ--GQEGLIALSGGRGGDVGQALDAGNAVSALALARQWAHLFPGSYYIELQ 176

Query: 188 RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           R    G + Y ++  ++LA    LP+VAT+   FL E +++AH+  + +A   +++   R
Sbjct: 177 RAGMDGDEAYTQA-ALRLASEAGLPVVATHPVQFLDEFEFQAHEARVCIAEGEILANPRR 235

Query: 246 -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
             R + + YL +  EM   F+D+P AL NTVEIA+RC+  L +  P LP F   E    D
Sbjct: 236 VRRFSKEQYLLSSEEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFPTPEGVGLD 295

Query: 302 D--IQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
           D  +Q  EE         GLE R   L   A  +    + Y +RL +E   I +M F GY
Sbjct: 296 DYLVQLSEE---------GLEKRMEFLFPDAAERESKREQYYERLRWECKTIIQMGFPGY 346

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
           FLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SMP
Sbjct: 347 FLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMP 406

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           DFDIDFCQD R+ VI YV+ KYG   V+QI TFG+L AKA +RD GR L MPY   D L 
Sbjct: 407 DFDIDFCQDNRERVIDYVKEKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGLS 466

Query: 477 KLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
           KLIP +P  P +L+  + D+  F++    +  V  L+++++ LEGL R+   HA G++I 
Sbjct: 467 KLIPFNPMDPWTLERTLKDEPAFKDRYEQEEEVRALVDLAKPLEGLTRNIGMHAGGVLIA 526

Query: 536 DRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
              L+   P+Y +  + +  V+QF+   +E AGL+KFDFLGL+ LT+L  ++ ++ Q   
Sbjct: 527 PGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNE 586

Query: 595 ---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                D+  +  DD   Y +L    T  +FQLES GM++ L+ ++P+  EDIIA+++LYR
Sbjct: 587 DKRDFDVMALALDDPAAYKILCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALYR 646

Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
           PGP+++ +V  + NRK+G+  +   H  ++  LK T GVI+YQEQVM I+Q++ GYSL  
Sbjct: 647 PGPLESGMVDDFVNRKHGRAAVDYFHNDLESTLKSTYGVIVYQEQVMLISQIIGGYSLGG 706

Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
           AD+LRRAMGKK  EEM K +E F  GA + G    +AV +F+L+ KFA YGFNKSH+AAY
Sbjct: 707 ADLLRRAMGKKKPEEMAKHRELFEQGAKEKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAY 766

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------T 823
           A+ISYQTAW+K ++P EFLAA+M+ +MD+ +K++ FC+DA+   ++++PP VN       
Sbjct: 767 ALISYQTAWLKAYHPTEFLAATMSSDMDDTDKVQIFCRDAQDNGVEVLPPDVNFSGYRFE 826

Query: 824 PCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLN 878
           P VD    + +    + Y L A+KG G      I+ A  +  PF +L DFC RV  + +N
Sbjct: 827 PVVDKHTKNGKPPRTMRYGLGAVKGTGQGAVEDILRARKEGGPFLNLFDFCRRVSKQAVN 886

Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
           RR +E+L+ AGA D    +R  +L S+    + A+  +  R+    ++F  + G      
Sbjct: 887 RRTIEALIKAGAFDTIEPNRAAMLASVPTAMEAAE--QAARSANQASLFGDDSGDVVAG- 943

Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
            L K +  +   +   E+  LG+Y+SGH  D ++  +R++
Sbjct: 944 ELAKVAPWDLHKKLTEEKSALGYYYSGHLFDAWRDEVRRI 983


>gi|325972730|ref|YP_004248921.1| DNA polymerase III subunit alpha [Spirochaeta sp. Buddy]
 gi|324027968|gb|ADY14727.1| DNA polymerase III, alpha subunit [Spirochaeta sp. Buddy]
          Length = 1155

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1039 (40%), Positives = 621/1039 (59%), Gaps = 24/1039 (2%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            T+   +   FVHL  H+ +SLL+GA  +   + K  +    ++AITD  N+F AL F   
Sbjct: 6    TEITTQQSRFVHLHNHTDFSLLDGAAPIGRYMAKAKSLGMTSLAITDHGNMFGALRFYNA 65

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A  AGI+PIIGC+   +   + +    G    P    ++LL    +GY  L+EL S  Y 
Sbjct: 66   ARDAGIKPIIGCEFYCNPAGHTERPAPGGRK-PNQYHLILLAINEKGYHNLMELNSLSYT 124

Query: 122  LDQGKQ-SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
              QG     RI    L +   EG+I L+    G I +    +  + A++R L F  +F D
Sbjct: 125  --QGFYFKPRIDDELLVKY-NEGVICLSACLGGEILQHLLNDQYEKAKERALWFSSVFDD 181

Query: 181  -RLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             R Y+ +Q H   D+ R + ++ QL+    +PLV TN+  ++ ++D  A D+L+ V  ++
Sbjct: 182  GRYYLEMQDHNLPDQKRTNPLLKQLSEETGIPLVCTNDIHYIEKDDANAQDLLLCVGTNS 241

Query: 239  VVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
              +  DR R    + Y+K+  +M SIFS  PEALENT +IA RC+  + +  P+LP F  
Sbjct: 242  KKNDPDRMRFPNQEFYMKSEEQMASIFSWCPEALENTGKIADRCNLEIHLPGPLLPDF-- 299

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E     +   + LR+ +  GL+ R +          ++  +RLD+EL+VI +MKF GYF
Sbjct: 300  -EVPQGFEGPAHYLRHLSHEGLKKRYS-------VVTEELTKRLDYELDVIIKMKFEGYF 351

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV D+IQWAKK++IPVGPGRGSGAGS+ AY++ ITD+DP++++LLFERFLNP+R+SMPD
Sbjct: 352  LIVMDYIQWAKKHDIPVGPGRGSGAGSLVAYSIDITDVDPIKYNLLFERFLNPERVSMPD 411

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC +RR EVI YV   YG ERVAQI TFG+L+AKA ++DV R L +P+ + + +CK
Sbjct: 412  FDIDFCFERRQEVINYVTEHYGTERVAQIATFGTLKAKAVVKDVARVLDIPFDESNNICK 471

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            LIP+DP   ++ +A   +    E          L + +++LEGL RH STHAAG+VIG  
Sbjct: 472  LIPDDPKMTLA-KAFEQNKELVELEQKGGIYAELFDAARRLEGLNRHTSTHAAGVVIGKE 530

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             L   VP+YRD ++    TQ+ M  IE+ GL+K DFLGLKTLTL++ + D + ++  K  
Sbjct: 531  ELVNYVPLYRDAKTGAISTQYTMDLIEECGLVKMDFLGLKTLTLIKHTEDLIHKKDPKFT 590

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
             + I   D +T+ +L    +  +FQ ES GM+  L+  +P  IED++AL +LYRPGP+  
Sbjct: 591  STAIDEKDPKTFEMLCRGDSTAVFQFESQGMQNILKEAKPSNIEDLVALNALYRPGPMAY 650

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  + N K G++ I   +P ++  LK T GVI+YQEQVM++AQ+++GYSL  AD+LRR M
Sbjct: 651  IPQFVNCKLGRQPITYANPELEEELKTTYGVIVYQEQVMKVAQIIAGYSLGGADILRRIM 710

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK    ++K+K +FI+GA   G S+  A  IFE+L  FA YGFNKSHA AY+V++YQTA
Sbjct: 711  GKKKVAALEKEKVKFIAGAKALGRSEQHAAEIFEMLEPFAGYGFNKSHAVAYSVVAYQTA 770

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YP EF AA++T EM + +K  ++ Q A+   ++I+PPSVN     F V + +I Y
Sbjct: 771  FLKANYPAEFWAANLTNEMGSPDKFSEYLQVAKDQGLEILPPSVNYSDKHFSVVNGKIVY 830

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LA IK VG      ++ E  A  P+  L DF +R+D+K +N ++LESL+ AGA D  G 
Sbjct: 831  GLAGIKNVGEGVVELLVSEREAHGPYKDLLDFLTRLDAKAMNTKLLESLIKAGAFDTLGT 890

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LL++L +   Y Q  ++       ++F  E     +  T++         + E E+
Sbjct: 891  NRPTLLENLGDAITYVQKRKEATAFGQISLFDDETEASMETFTMKPAEDWKLPEKLEMEK 950

Query: 957  RVLGFYFSGHPLDVYKPIL--RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
             +LGFY SGHPLD +   +  R      + E+VA  R  NI   AMV S +   T+KG  
Sbjct: 951  GLLGFYISGHPLDAFSQAINQRVTANTAHLENVAFNRPTNI--IAMVSSIRPFTTQKGGI 1008

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + ++  ++    ++A  FP
Sbjct: 1009 MAFLQLTDRNATFDATLFP 1027


>gi|308274799|emb|CBX31398.1| DNA polymerase III subunit alpha [uncultured Desulfobacterium sp.]
          Length = 1179

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1045 (39%), Positives = 624/1045 (59%), Gaps = 46/1045 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA+   ++ +++      ++AITD  ++F ALEF   A    I+PI
Sbjct: 9    FVHLHVHTQYSLLDGAIRFKHLFNRVRDFGMDSVAITDHGSMFGALEFYLNATDNNIKPI 68

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC+  +  +   K+T++       +  ++LL    EGY+ L +L S +  L+      R
Sbjct: 69   IGCECYLAPR---KLTDKTSQDGKRLSHLILLAENNEGYRNLCKLAS-IAQLEGFYYKPR 124

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRH 189
            I    LQ+  + GLI L+    G I       + + A+     ++ LFG+   Y+ LQ +
Sbjct: 125  IDKEVLQKY-SRGLIALSACLHGEIPMLIGEGNIKEADNAARFYQGLFGENNFYLELQNN 183

Query: 190  RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                + + ++ +V +     +PLVATN+  +L++ED  AH++L+ +     V      + 
Sbjct: 184  GMEIQNKINEALVDMGNRLSIPLVATNDCHYLNKEDARAHEILLCIQTGKTVQDPSHFKF 243

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  Y K+  EM + F+  P+A++NT +IA+RC+  +  +    P +   E +     E
Sbjct: 244  ETDQLYFKSGEEMNNFFASTPDAIKNTADIAKRCNIDMDFNNYHFPLYTAIEGN----TE 299

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFI 364
            +  L  K + G E   A+  I     A D   YRQRL  E++VI  M F GYFLIVADFI
Sbjct: 300  QELLEQKVLHGFERVFAK--IKSKNPAIDENLYRQRLKHEMSVIISMGFPGYFLIVADFI 357

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++AK NNIPVGPGRGS AGS+ AY+L IT++DP+   L+FERFLNP R SMPD D+DFC 
Sbjct: 358  KYAKDNNIPVGPGRGSAAGSLVAYSLGITNLDPIEHGLIFERFLNPARKSMPDIDVDFCI 417

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + RD+V++YV  KYG  RV+QI TFGS++ +A +RDVGRAL +P  ++D + K+IP+   
Sbjct: 418  NGRDKVLKYVVEKYGENRVSQITTFGSMKTRAVIRDVGRALDIPLREIDEIAKMIPD--- 474

Query: 485  HPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                L    DD+  +E RL++ +  R     L+ I + LEGL RHASTHAAG+VI D+PL
Sbjct: 475  ---VLNISLDDALTQEPRLSELARQRSDIAELITICRTLEGLTRHASTHAAGVVISDKPL 531

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
             + +P+YR    +L VTQF+MK +EK GL+KFDFLGL+ LT++  +L  ++++G    D+
Sbjct: 532  DEYLPLYRGKNGEL-VTQFDMKRVEKIGLVKFDFLGLRNLTVIANTLSLISKQGNSPPDI 590

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +   D  TY LL    T G+FQLES GM++ L+ ++P+  EDI ALV+LYRPGPI++ 
Sbjct: 591  DSLDLTDQATYRLLAEGNTTGVFQLESKGMKELLKRVRPENFEDITALVALYRPGPIESG 650

Query: 659  VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            ++  Y  RK+G++ +  + P ++P+LKET GVI+YQEQVM+IA +++GYS++EAD LR+A
Sbjct: 651  MIDDYVERKHGRKSVEYLVPELEPILKETYGVIVYQEQVMKIAGVIAGYSMAEADDLRKA 710

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKKI E M  Q+ERF+SGA+ NG+ K  A  +F L+ KF  YGFNKSH+AAYA+I+YQT
Sbjct: 711  MGKKIVEIMAAQRERFVSGATANGVPKEKADTLFSLIDKFGGYGFNKSHSAAYALIAYQT 770

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++KTHY VEF+A+ +T EM + + + K+  +     + ++PP +N    DF V D  I 
Sbjct: 771  AYLKTHYQVEFMASLLTSEMGSTDSVVKYISECSSNGVSVLPPDINESDRDFSVSDRNIR 830

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            + L A+K VG      ++E      F SL +FC RVD KK+N+RV+ESL+  GA D  G 
Sbjct: 831  FGLVAVKNVGENAIEAVIETRNKDKFTSLFNFCERVDLKKVNKRVIESLIKCGAFDSTGT 890

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFEN 954
             R +++  LD+  +Y Q V++ + +    +F    E  +F D   + +    N       
Sbjct: 891  FRSRMMAILDDAVEYGQRVQREKNSPQIGLFGEMTENESFQDIPRIPEIDEWNEKELLAF 950

Query: 955  EQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
            E+  LGFY +GHPL+ YK ++ K      + IK   +      G   R   ++ + +  K
Sbjct: 951  EKEYLGFYITGHPLNKYKELIAKYTNTDSLAIKDMND------GEIARFGGIITNIKIIK 1004

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            TRKG  + +V   +     E   FP
Sbjct: 1005 TRKGDDMAYVVTEDMIGSIETTVFP 1029


>gi|121605816|ref|YP_983145.1| DNA polymerase III subunit alpha [Polaromonas naphthalenivorans
           CJ2]
 gi|120594785|gb|ABM38224.1| DNA polymerase III, alpha subunit [Polaromonas naphthalenivorans
           CJ2]
          Length = 1173

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/1002 (41%), Positives = 596/1002 (59%), Gaps = 39/1002 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL++H+ +S+++G   ++ I+   AADQQPA+AITD +NLF  ++F ++    G++P+
Sbjct: 5   FVHLRIHTEFSVVDGTNRIDEIVAAAAADQQPALAITDLSNLFGTVKFYKEGRKTGVKPL 64

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG         ++ +   GK        ++LLV  ++GY  L EL++R +  +  +    
Sbjct: 65  IGA--------DIWLEAPGKEAGAPASRLLLLVQDSQGYLNLCELITRAWTKNVVRDQAV 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           + L WLQE+  EGLI L+G   G + +A     S  A +  L    +F  R Y+ LQR  
Sbjct: 117 VKLQWLQEL-NEGLIALSGAQRGAVGQALVQGDSARAMECALHLSGMFPRRFYLELQRS- 174

Query: 191 GY--DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
           G+  D    +  VQLA   +LP+VAT+   FL+ +DYEAH+  + ++   ++    R R 
Sbjct: 175 GHPEDERHVTAAVQLAARLKLPVVATHPVQFLTYDDYEAHEARVCISEGEILGNARRVRK 234

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            T + Y K+  +M ++F+D+P AL NTVEIA+RCS  L++  P+LP F   E +  +   
Sbjct: 235 FTREQYFKSADQMKALFADVPSALANTVEIAKRCSLTLELGKPMLPEFPTPEVNGSRMPP 294

Query: 308 ENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
           E+  R+ +  GLE RL         +     +Y  RL+FE+N I +M F GYFLIV DFI
Sbjct: 295 EDYFRHTSFEGLEERLLHLYPNPAQRDAKRPEYVARLEFEINTILKMGFPGYFLIVGDFI 354

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           QWAK N  PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 355 QWAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQ 414

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RD VI YV++KYGH  V+QI+TFG++ A+AA+RDVGR L  PY   D + KLIPN P 
Sbjct: 415 SNRDRVIDYVKDKYGHAAVSQIVTFGTMAARAAIRDVGRVLDFPYGFCDGISKLIPNKPG 474

Query: 485 HPVSLQAIADDSRFR---------EARLAD-----PSVDRLLEISQKLEGLYRHASTHAA 530
             V+LQ +  D +           E  LAD       V  LL++++KLEGL R+   HA 
Sbjct: 475 QAVTLQLVPADRKKNDKMVYALEAEPVLADRESKEEDVHTLLDLARKLEGLTRNVGMHAG 534

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL- 589
           G++I    L+   P+Y    S   V+QF+   +E  GL+KFDFLGL TLT+L+ + +F+ 
Sbjct: 535 GVLIAPGKLTDFCPLYLQPGSTSAVSQFDKNDVEAIGLVKFDFLGLATLTILEIAREFII 594

Query: 590 ----AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
               AQ+  K +   +P DD   Y L     T  +FQ ES GM++ L+  +PD +ED+IA
Sbjct: 595 ARYPAQKDFKFED--LPLDDARVYRLFADGNTEAVFQFESIGMQRMLKDARPDRLEDLIA 652

Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
           + +LYRPGP+D I  Y  RK GKE      P + PML+ET G+++YQEQVMQ AQ+L GY
Sbjct: 653 MNALYRPGPMDLIPTYIARKQGKEVPEYPDPRVKPMLEETYGIMVYQEQVMQTAQILGGY 712

Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
           SL  AD+LRRAMGKK ++EM + +E F  GA  NG+++  A  +F+L+ KFA YGFNKSH
Sbjct: 713 SLGGADMLRRAMGKKDEKEMAQHREIFRKGAGINGLAQEKADEVFDLMEKFAGYGFNKSH 772

Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
           +AAYA+++Y TAW+K H+P EF AA+MT+EMD+ +K+K    DA++  +    P +N   
Sbjct: 773 SAAYALLAYHTAWLKVHFPAEFFAANMTVEMDDTDKLKILFGDAQKMGLSFEVPDINQGD 832

Query: 826 VDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLE 883
             F+ +    + Y L AIKG G      I+ A  +  PF SL DFC RVD  K+N+R +E
Sbjct: 833 YRFEPITAKSVRYGLGAIKGTGQQAIAAIVAARKEGGPFTSLFDFCVRVDRSKMNKRTVE 892

Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
           +L+  GA D    +R +LL S +    +A   + N         +      + +  L + 
Sbjct: 893 ALIKGGAFDSLHLNRAELLASSERAFDFAAATQANANQGGLFDMSDSHAASTQEPELVEM 952

Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            +     R   E+  +GFY SGH  D  +  +R+   +  E+
Sbjct: 953 PMFGVKARLVLEKTAIGFYLSGHLFDEVEQEVRQFAKRSIED 994


>gi|42523550|ref|NP_968930.1| hypothetical protein Bd2078 [Bdellovibrio bacteriovorus HD100]
 gi|39575756|emb|CAE79923.1| dnaE [Bdellovibrio bacteriovorus HD100]
          Length = 1179

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/981 (42%), Positives = 594/981 (60%), Gaps = 37/981 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFVHL VHS YSLLE A  +  I  K AA Q PA+A+TD  N+F A+EF        ++P
Sbjct: 2   SFVHLHVHSEYSLLEAACRVKAIAKKAAAMQMPAVALTDNGNMFGAVEFFFACKDNNVKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQG-KQ 127
           I+G    I     L+   Q +    T P  +V L    +GY+ L +L S  Y   +G   
Sbjct: 62  ILGLDAYIAPGSRLE-KKQDRDQVNTGPRRLVFLAQNNDGYRNLCKLSSIGY--QEGFYW 118

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             RI    +Q+   E LI LTGG  G +  +F       A  ++   K++F DRLY+ + 
Sbjct: 119 KPRIDYEVIQQY-NENLICLTGGLRGEVAESFLREGPDAALAKIRQLKEIFNDRLYLEMC 177

Query: 188 RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           R     +DR     +++ +    +P+VA+N+  +++++D  A +VL+ +  +  +S + R
Sbjct: 178 RTGVAEWDRLNPF-LLEASKITGVPVVASNDVHYMTQDDQMAQEVLICIGSNKTLSDESR 236

Query: 246 PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---------HAPILPRF 295
            R+  D  YLK   +M  +F+D+PEA+ NT++IA RC    ++         H P  P  
Sbjct: 237 FRLGTDEFYLKKPEQMTELFADVPEAIANTLQIAERCDVKFKLKDDQGKPIYHLPTFP-- 294

Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARM 351
                DD    +E+  R KA AGL VR     A+G +       +Y +RL++EL +I RM
Sbjct: 295 ----TDDGLSLKEDIAR-KAKAGLLVRFEEAAARGEMIPEDKIPEYDKRLEYELGIIDRM 349

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            F+GYFLIV DFI WAK N+IPVGPGRGSGAGS+ AY L ITD+DPL   LLFERFLNP+
Sbjct: 350 GFNGYFLIVQDFINWAKVNDIPVGPGRGSGAGSLVAYVLRITDLDPLPNFLLFERFLNPE 409

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R+SMPDFDIDFCQDRR EVI+YV  KYG E V+QIIT+G LQA+AA++DVGR L M + +
Sbjct: 410 RISMPDFDIDFCQDRRQEVIQYVTRKYGQESVSQIITYGKLQARAAIKDVGRVLGMTFPE 469

Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
           VD + KLIP      +  +A+  + R  E    +P+V+ L++++Q++EG+ RHA  HAAG
Sbjct: 470 VDAVTKLIPEKLGINLK-EAMEMEPRIGEMMEMNPTVNTLMDLAQRVEGMVRHAGIHAAG 528

Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LA 590
           ++I D  L +  P+Y+    +  V Q++MK  EK GLIKFDFLGLKTLT +  +L   L 
Sbjct: 529 VIIADGQLVRHAPLYKGADGE-QVVQYDMKHAEKIGLIKFDFLGLKTLTHINHALKLILK 587

Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            RG K+   +IP  D  T+ +++   T G+FQ E  G+  A   ++P    D+ A+ SLY
Sbjct: 588 NRGKKIQSQMIPMTDAATFEMMSRGDTAGVFQFEGEGITDATRKIRPSSFADVTAITSLY 647

Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           RPGP+ NI  + +RK+GK  +  +      +L ET G+++YQEQVM IA  ++GYSL EA
Sbjct: 648 RPGPMANIPDFTDRKHGKAPVEYLLEDTREVLSETYGIMVYQEQVMGIASRIAGYSLGEA 707

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
           D+LRRAMGKKIKEEMD+ +ERF+ GA + G  K  + ++F+L+ KFADYGFNKSHAAAY+
Sbjct: 708 DMLRRAMGKKIKEEMDQHRERFMKGAIERGHDKQRSSDLFDLMYKFADYGFNKSHAAAYS 767

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
           V++ QTAW+K HYP EF AA ++ E+ + EKI K+ +DA +  + +  PSVN     F V
Sbjct: 768 VVTIQTAWLKCHYPAEFFAALLSTELSDTEKIVKYSKDATKRGLTVRSPSVNFSDYLFDV 827

Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSKKLNRRVLESLVF 887
             + IY+ L AIKGVG      I+EA  + P   F+SL++F + +D++++N++V+E L+ 
Sbjct: 828 HGDEIYFGLGAIKGVGQNAVEAIIEARNNLPEKKFNSLDEFFNSIDTRRVNKKVIECLIK 887

Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
           AGA D FG  R QL+         A  ++K+R     ++F     T   K+TLE+     
Sbjct: 888 AGAFDGFGAHRAQLVAGYQKYLDRAIGLQKDREMGQSSLFDLGPST-ETKVTLEEVKPWA 946

Query: 948 SSVRFENEQRVLGFYFSGHPL 968
            +     E+ VLGFY S HPL
Sbjct: 947 RTASLTYEKEVLGFYLSDHPL 967


>gi|107023251|ref|YP_621578.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia AU 1054]
 gi|116690334|ref|YP_835957.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia HI2424]
 gi|105893440|gb|ABF76605.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia AU 1054]
 gi|116648423|gb|ABK09064.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
          Length = 1177

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/1028 (40%), Positives = 615/1028 (59%), Gaps = 52/1028 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + +++I+   AAD Q A+A+TD  N F  + F Q+A   GI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC + I   D+    ++          ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGCDVWIANPDDRDKPSR----------LLLLVKDKVGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL     +GL+ L+G   G I  A    + + A +    + ++F    Y+ LQR
Sbjct: 114  AELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAAALAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T D Y + + EM ++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFTTDQYFRTQDEMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RLAQ       +      Y +RL+FE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSKEGLEARLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L     +  L
Sbjct: 529  FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAEWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L A+KG G      I+ A  +K F  L DFC R+D + +NRR +E+L+ AGA 
Sbjct: 829  SRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH------ENIFAHEKGTFSDKITLEKFSV 945
            D    +R QL+ S+    + A   E N           E+  AH          L     
Sbjct: 889  DSLNPNRAQLIASVPLAMEAADQAEANAMQAGLFDMGAESPHAH---------ALVDEPA 939

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004
             +   R + E+  LGFY SGH  D Y+  +R+       + V  ++ G +  +A ++ S 
Sbjct: 940  WDDKRRLQEEKAALGFYLSGHLFDAYRDEVRRF----VRQKVGDLKEGRDKLVAGIIASL 995

Query: 1005 QQKKTRKG 1012
            + + T++G
Sbjct: 996  RTQMTQRG 1003


>gi|254247600|ref|ZP_04940921.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
 gi|124872376|gb|EAY64092.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
          Length = 1177

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1028 (40%), Positives = 616/1028 (59%), Gaps = 52/1028 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + +++I+   AAD Q A+A+TD  N F  + F Q+A   GI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC + I   D+    ++          ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGCDVWIANPDDRDKPSR----------LLLLVKDKVGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL     +GL+ L+G   G I  A    + + A +    + ++F    Y+ LQR
Sbjct: 114  AELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAAALAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T D Y + + EM ++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFTTDQYFRTQDEMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RLAQ       +      Y +RL+FE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSKEGLEARLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +    K D SL
Sbjct: 529  FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSL 588

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L A+KG G      I+ A  +K F  L DFC R+D + +NRR +E+L+ AGA 
Sbjct: 829  SRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH------ENIFAHEKGTFSDKITLEKFSV 945
            D    +R QL+ S+    + A   E N           E+  AH          L     
Sbjct: 889  DSLNPNRAQLIASVPLAMEAADQAEANAMQAGLFDMGAESPHAH---------ALVDEPA 939

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004
             +   R + E+  LGFY SGH  D Y+  +R+       + V  ++ G +  +A ++ S 
Sbjct: 940  WDDKRRLQEEKAALGFYLSGHLFDAYRDEVRRF----VRQKVGDLKEGRDKLVAGIIASL 995

Query: 1005 QQKKTRKG 1012
            + + T++G
Sbjct: 996  RTQMTQRG 1003


>gi|170691817|ref|ZP_02882981.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M]
 gi|170143101|gb|EDT11265.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M]
          Length = 1196

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/1028 (40%), Positives = 617/1028 (60%), Gaps = 52/1028 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++++   A D Q A+A+TD  N F  + F ++A   G++
Sbjct: 7    PRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+  L +Q +  
Sbjct: 67   PIAGC--------DVWITNPDDRDKPS--RLLLLVKDRRGYLNLCELLSKASLTNQYRGR 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL+    EGL+ L+G   G I  A    + + A++  L + K+F    Y+ LQR
Sbjct: 117  AEIEAGWLESGLGEGLLALSGAQQGDIGLALAAGNQEAAKRNALHWAKVFPGGFYIELQR 176

Query: 189  --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
                G ++Y + Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++   R 
Sbjct: 177  CGQPGGEQYVQ-QAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRQ 235

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R TP+ Y + + EM ++F+D+P AL NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 236  KRFTPEQYFRTQDEMTALFADIPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 293

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L + +  GLE RL Q       +      Y QRL+FE   I +M F GYFLIVAD
Sbjct: 294  --DDYLVHLSKEGLEKRLEQLYPDEAERAAQRDTYYQRLEFECGTIIKMGFPGYFLIVAD 351

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 352  FINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDF 411

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 412  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 471

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LLE++Q++EGL R+   HA G++I    L+ 
Sbjct: 472  PGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTD 531

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +    K D SL
Sbjct: 532  FCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKKDWSL 591

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPGP+D I
Sbjct: 592  AQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLI 651

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 652  PSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 711

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM + +E F  GA+KNG++   A  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 712  KKKAEEMAQHRELFRQGAAKNGLTGEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 771

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGD----- 832
            +K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP +N     F+ V +     
Sbjct: 772  LKAHHPAEFMAANMSLAMDDTDKVKILFEDCITNKMTVLPPDINLSAYRFEPVAEPDGKR 831

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  D PF  + DFC+R+D + +NRR +E+L+ AGA 
Sbjct: 832  SKTIRYGLGAIKGSGQNAIEEILRAREDGPFIDIFDFCNRIDRRVVNRRTVEALIRAGAF 891

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--SDKITLEKFSVEN-- 947
            D    +R QL+ S+    + A+    N         A + G F   D  +     V+   
Sbjct: 892  DTLHQNRAQLIASVSLAMEAAEQASAN---------ALQAGLFDMGDAPSQGHELVDEPE 942

Query: 948  --SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004
                 + + E+  LGFY SGH  D YK  +R+       + +  ++ G +  +A ++ S 
Sbjct: 943  WPEKKKLQEEKAALGFYLSGHLFDAYKDEVRRF----VRQKIGELKEGRDKLVAGIIASL 998

Query: 1005 QQKKTRKG 1012
            + + T++G
Sbjct: 999  RTQMTQRG 1006


>gi|94676467|ref|YP_588968.1| DNA polymerase III, alpha subunit [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
 gi|94219617|gb|ABF13776.1| DNA polymerase III, alpha subunit [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
          Length = 1163

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/988 (40%), Positives = 603/988 (61%), Gaps = 46/988 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           PSF+HL++HS YS+++G + +++++ K  +   PA+A+TD  NL+  ++F + A + GI+
Sbjct: 4   PSFIHLRIHSDYSIIDGLIKVSSLVKKAVSLNMPALALTDVTNLYGIIKFYKAANSVGIK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PIIG      +  N  +  +       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64  PIIGADF---LMYNPILGGE-------LTELTILATNYIGYQCLTMLISQAYRRGYGAAG 113

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I   WL +   +GLI+L+G   G + +    +  Q  +K L  + + F DR Y+ L R
Sbjct: 114 PVIDRDWLIQ-HNQGLIILSGARKGDVGKLLLNDKMQQVKKCLAFYHRYFPDRYYLELIR 172

Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRP 246
             R  +    +  V LA  + LP+VATN+  F+S +D++AH++ +A+ +  ++   K   
Sbjct: 173 TGRLNEEKYLNLAVLLAKKNGLPVVATNDVRFISSDDFQAHNIRVAIHNGCLLDNVKQSY 232

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +   Y+++  EM  +F D+PEAL N+VEIA RC+  +++    LP+F           
Sbjct: 233 DYSSQQYIRSEQEMCELFKDIPEALANSVEIAIRCNVTIRLGEYFLPQFYTGNI-----S 287

Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             + L   A  GLE RLA      I    +   Y QRLD EL VI  M F GYFLIV +F
Sbjct: 288 TNSYLIKCARQGLEERLAFLFPDLIQLKDNRLPYDQRLDQELQVINGMGFPGYFLIVMEF 347

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           IQW+K N+IPVGPGRGSGAGS+ AYAL ITDI+PL F LLFERFLNP+R+SMPDFDIDFC
Sbjct: 348 IQWSKDNSIPVGPGRGSGAGSLVAYALKITDINPLPFDLLFERFLNPERISMPDFDIDFC 407

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PYS V+++ KL+P+DP
Sbjct: 408 MEKRDLVINHVAETYGRDAVSQIITFGTMAAKAVIRDVGRVLGYPYSFVNKISKLVPHDP 467

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              +  +A+A   + R+    D +V  L+++++KLEG+ R+   HA G+VI    ++   
Sbjct: 468 GITLD-KALAIAPQLRQIYNVDENVTLLIDLARKLEGVTRNVGKHAGGVVIAPTKITDFA 526

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----RGVKVDLS 599
           P+Y D     P+TQF+   IE AGL+KFDFLGL+TLT++ ++L+ + +    +   ++++
Sbjct: 527 PLYYDSEGKCPLTQFDKNDIEYAGLVKFDFLGLRTLTIINRALEMINKHIHSKLNPIEIT 586

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP DD +++ +L    T  IFQLES G+++ +  +QPDC EDIIAL++L+RPGP+ + +
Sbjct: 587 TIPLDDKKSFDMLLCADTTAIFQLESRGIKELIRRLQPDCFEDIIALIALFRPGPLQSGM 646

Query: 660 VYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           V N  NRK+G+E I        HP + P+L+ T G+I+YQEQVMQIA++L+GY+L EAD+
Sbjct: 647 VDNFINRKHGRETICYPDIQWQHPSLQPILEPTYGIILYQEQVMQIARILAGYTLGEADL 706

Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           LRRAMGKK  +EM KQ+  F  GA K GI   +A+ IF+L+ KFA YGFNKSH+ AYA++
Sbjct: 707 LRRAMGKKEPKEMVKQRAIFKIGAEKMGIESKLAMKIFDLVEKFAGYGFNKSHSTAYALV 766

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
           SYQT W+K HYP +F+A++MT ++DN++K+     +  +  I ++PP++N     F V  
Sbjct: 767 SYQTLWLKAHYPSQFMASAMTADIDNIDKLAILVYECLRMGITVLPPNINISHYYFHVNK 826

Query: 833 N-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
           N +I Y L AIKG+G      I+EA +    F +L D C R  +KKLNRR+LE L+ +GA
Sbjct: 827 NSQIIYGLGAIKGLGEGPITTILEARNTGGKFSNLLDLCIRTCTKKLNRRILEKLIISGA 886

Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            D  G  R  L+  L+   K A    K       ++F+    T +DK  +  +S ++ ++
Sbjct: 887 CDQLGSHRAALMNELETALKTADQYTKLNMIGQIDMFS----TQADKQCILDYSHKSKNI 942

Query: 951 R-------FENEQRVLGFYFSGHPLDVY 971
           +        + EQ  LG Y + HP+  Y
Sbjct: 943 QPWSKQVILKGEQETLGLYLTSHPIIEY 970


>gi|15893134|ref|NP_360848.1| DNA polymerase III subunit alpha [Rickettsia conorii str. Malish 7]
 gi|81595527|sp|Q92GB2|DPO3A_RICCN RecName: Full=DNA polymerase III subunit alpha
 gi|15620342|gb|AAL03749.1| DNA polymerase III alpha chain [Rickettsia conorii str. Malish 7]
          Length = 1181

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/1084 (38%), Positives = 628/1084 (57%), Gaps = 85/1084 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++  ++++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I            K        I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNI------------KYDIDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L E   EGLI L   + G + +     + + A       +++ GDR Y  + R
Sbjct: 111  DHIDFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +++ E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y K+  EM+ +FSDLP A++NTV +  RC F    + P+LP F  +        E
Sbjct: 230  VSENCYFKSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATENIS-----E 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
             + ++  A  GL  RLA    ++    +       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIKKDAKEGLLARLATKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PVSL QA+ +      A   +           +  +++ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ +  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDANSDMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHELLQPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAA+Y 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VISYQTA++K +YP  FL A + LE++N +KI  F Q+A+   I+I+ P++N     F V
Sbjct: 765  VISYQTAYLKANYPAAFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824

Query: 831  G------------------------------------DNRIYYSLAAIKGVGTTTARHIM 854
                                                    I ++L AIKGV     + + 
Sbjct: 825  KFSDTVIPHSVKPVIPRLDRGIQKISKDTVVKPRCDIAGAIIFALGAIKGVTPNFGKLVT 884

Query: 855  -EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
             E  A   F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QLL S+  +  Y+ 
Sbjct: 885  DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944

Query: 914  -WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
             + E+  +N+   I   +  + S  I +     + +++ F  E   +G + S HPL  Y+
Sbjct: 945  AYHEEQESNQFSLI---KVSSLSPTILVSSDYADKNTLAFY-EFEAMGLFISNHPLTEYQ 1000

Query: 973  PILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVT--FSEPAKEYE 1028
             I  ++ I    +    +    N + LA ++   Q+K +R  +R  +VT   S+P   +E
Sbjct: 1001 EIFSRLNILNTADLHNNLPDGTNRVNLAGVI---QKKDSRMSARGRFVTLVLSDPENIFE 1057

Query: 1029 ANFF 1032
             + F
Sbjct: 1058 LSIF 1061


>gi|146329848|ref|YP_001209597.1| DNA polymerase III, alpha subunit [Dichelobacter nodosus VCS1703A]
 gi|146233318|gb|ABQ14296.1| DNA polymerase III, alpha subunit [Dichelobacter nodosus VCS1703A]
          Length = 1175

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/1049 (39%), Positives = 611/1049 (58%), Gaps = 47/1049 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V L VHS YSL +  L +++I+         +IA+TD NNL++A++F Q A  A I+PI
Sbjct: 4    YVPLHVHSEYSLNDSLLRIHDIVAFAQTHDLTSIALTDRNNLYAAIKFYQCARRAKIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC  D+ ++D +   +Q          ++LL   A G++ L ELVS  Y  DQ    + 
Sbjct: 64   LGC--DLSIRDEVGQIHQ----------LILLAQNALGFRHLCELVSFAYTHDQTPNEIA 111

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +  + L     +GLI L+GG  G + +A      + A +    ++K+F +R Y+ + R  
Sbjct: 112  VDKTRLTAEQCQGLIALSGGEEGDVGKAIARGDRKHALQCATHWQKIFSNRFYLQIARFG 171

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              +    SQ + ++     +  VATN + F +  D++ H+  + +A    +    R R  
Sbjct: 172  QTEPPLFSQNLAEIGQKLRIAAVATNLACFKTAADFDYHEARVCIASGDTIDNPKRVRRF 231

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            TP H+L+   ++  IF+D P+ L NT  IA+RC+ +L +    LP F   EC DI    E
Sbjct: 232  TPQHHLRAPQDLAQIFADAPQLLVNTELIAQRCNVVLSLGKHYLPDFPLPECIDI----E 287

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              L  +A  GLE RL Q        A+    Y++RL  EL VI RM+F GYFLIVADFIQ
Sbjct: 288  RYLVQEAERGLEERLVQLFPDPQIRAEKTALYQERLQTELAVINRMQFPGYFLIVADFIQ 347

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK +++PVGPGRGSGAGS+ A+ L IT++DP+ + LLFERFLNP+R+SMPDFD+DFC +
Sbjct: 348  WAKNHDVPVGPGRGSGAGSLVAFCLKITELDPMAYDLLFERFLNPERVSMPDFDVDFCMN 407

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--- 482
            +RD+VIRYV +KYGH++V+QI T G++ AKA +RDVGR L +PY  VD++ K++PN    
Sbjct: 408  KRDDVIRYVADKYGHDKVSQIATHGTMAAKAVIRDVGRVLSLPYPVVDKISKMVPNTLGV 467

Query: 483  --PAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
              P      +       F  A L      D  V  L++I+  LEGL R+   HA G+VI 
Sbjct: 468  TLPDALGKTEKSRTHPEFFSAELTKRYEEDEEVKYLIDIALPLEGLARNVGKHAGGVVIA 527

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ---KSLDFLAQR 592
               L+    +Y +      VTQF+ + IE AGL+KFDFLGL+TLT++    ++++  A  
Sbjct: 528  PTTLTDFSALYCEHAGSALVTQFDKEDIEAAGLVKFDFLGLRTLTVIDWAVQNVNQYAPA 587

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
              K+D+  I  DD  T+ LL +  T  +FQLESSGM+  +  +QPD  ED+IALV+L+RP
Sbjct: 588  NEKLDIRQIRDDDEATFQLLKSGKTTAVFQLESSGMKNLIAKLQPDNFEDLIALVALFRP 647

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+ + +V  + NRK+G+ K+V  HP +  +LK T GV++YQEQVMQ+AQ+L+ YSL EA
Sbjct: 648  GPLQSGMVDDFINRKHGRAKVVYPHPALAEILKNTYGVMVYQEQVMQVAQILAKYSLGEA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQK  F++ AS  G+ + +A++IF+L+AKFA+YGFNKSH+AAYA
Sbjct: 708  DLLRRAMGKKKPEEMAKQKGTFVARASAGGVDEQVAIDIFDLMAKFAEYGFNKSHSAAYA 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+K HYP  F+AA +T EMD  EKI     +  +  ++I+PPS+N    DF +
Sbjct: 768  LLSYQTAWLKAHYPAAFMAAVLTSEMDKTEKIVLLIDECHEMGLRILPPSINHSAYDFTI 827

Query: 831  G-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                 I + L AIKGVG      I+ E      F SL D C R+D K L R+ LE+L++A
Sbjct: 828  NQQGEILFGLGAIKGVGQAVIEQILAERRRGGAFQSLTDLCQRLDLKTLKRKTLETLIYA 887

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            GA D    +R  L   L    K A+   +++ N+  N+F+       +  + L   +   
Sbjct: 888  GAFDLIEKNRGALFAVLPQALKLAEQYHQDKKNRQTNMFSLLDAAHCEAHLALNPENSWQ 947

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--------IRLAA 999
               +   E+ VLG + SGHP  V   ++R +  K   E    +              L  
Sbjct: 948  PQQQLMWEKSVLGLFLSGHPAQVAAEMIRPICPKNIAEIQHELNQKTPHQGEYHFFYLGG 1007

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            ++V K+   ++KG    ++T  + + + E
Sbjct: 1008 LLVDKRNITSKKGKNFCFITIDDCSGKIE 1036


>gi|78067124|ref|YP_369893.1| DNA polymerase III subunit alpha [Burkholderia sp. 383]
 gi|77967869|gb|ABB09249.1| DNA polymerase III, alpha subunit [Burkholderia sp. 383]
          Length = 1176

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1028 (40%), Positives = 615/1028 (59%), Gaps = 52/1028 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + +++I+   AAD Q A+A+TD  N F  + F Q+A   GI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC + I   D+    ++          ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGCDVWIANPDDRDKPSR----------LLLLVKDKVGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL    ++GL+ L+G   G I  A    + + A +    + K+F    Y+ LQR
Sbjct: 114  AELDASWLDGELSQGLLALSGAQQGDIGLALAAGNEEAARRHAERWAKVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q   LA   +LP+VAT+ + F++++D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAATLAAALKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T D Y + + +M ++F+DLP A+ NTVE+A+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFTTDQYFRTQDDMAALFADLPSAIANTVEVAKRCNLKLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RLAQ       +      Y +RL+FE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSKEGLETRLAQLYPAEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +    K D +L
Sbjct: 529  FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWAL 588

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+ NG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHREIFAEGAATNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L A+KG G      I+ A  +K F  L DFC R+D + +NRR +E+L+ AGA 
Sbjct: 829  SRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH------ENIFAHEKGTFSDKITLEKFSV 945
            D    +R QL+ S+    + A   E N           E+  AH          L     
Sbjct: 889  DSLNTNRAQLIASVPLAMEAADQAEANAMQAGLFDMGAESPHAH---------ALVDEPA 939

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004
             +   R + E+  LGFY SGH  D Y+  +R+       + V  ++ G +  +A ++ S 
Sbjct: 940  WDDKRRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKVGDLKEGRDKLVAGIIASL 995

Query: 1005 QQKKTRKG 1012
            + + T++G
Sbjct: 996  RTQMTQRG 1003


>gi|113866925|ref|YP_725414.1| DNA polymerase III subunit alpha [Ralstonia eutropha H16]
 gi|113525701|emb|CAJ92046.1| DNA polymerase III alpha subunit [Ralstonia eutropha H16]
          Length = 1173

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/994 (42%), Positives = 601/994 (60%), Gaps = 43/994 (4%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +P FVHL++HS YS+++G + L + +   AAD   A+A+TD  N F  + + ++A   G+
Sbjct: 6   APRFVHLRLHSEYSIVDGIVRLEDAVKAAAADGMGALALTDLANAFGLIRYYKEARGKGV 65

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           +P++G         ++ +TN      P+   ++LLV    GY  L  L+SR +L +Q + 
Sbjct: 66  KPVVGA--------DVWLTNAEDRDKPS--RLLLLVQDRRGYLNLCMLLSRAWLGNQHRG 115

Query: 128 SVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
              I  +W  E G +      GLI L+G   G I  A    ++  A +    +  +F  R
Sbjct: 116 RAEIDPAWFLEPGEDDLPLATGLIALSGAMGGDIGMALANGNADGARRAAQHWSTVFAQR 175

Query: 182 LYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            Y+ LQR  + G D Y + Q VQLA   +LP+VAT+   F++ +DY AH+  + +A   +
Sbjct: 176 FYIELQRAGNAGTDAYVQ-QAVQLAAELQLPVVATHPVQFMTPDDYTAHEARVCIAEGEL 234

Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           ++   R R  T D Y K + EM ++F+D+P ALEN VEIARRC+  L++  P LP F   
Sbjct: 235 LANPRRTRRFTTDQYFKTQDEMCALFADIPSALENAVEIARRCNLTLELGKPRLPLFPTP 294

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
           +   +    ++ L   A  GLE RLA        +     +Y  RL+FE   I +M F G
Sbjct: 295 DGMSL----DDYLVYMAKDGLEKRLAVLFPDEAVRESKRPEYYARLEFETGTIIKMGFPG 350

Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
           YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 351 YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVSM 410

Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
           PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y  VD +
Sbjct: 411 PDFDIDFCQHGRDRVITYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDGI 470

Query: 476 CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            KLIP  P   V+++ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 471 AKLIPFKPGKLVTIEEAKKEEPLLTERESNEEEVRQLLELAQRVEGMTRNVGMHAGGVLI 530

Query: 535 GDRPLSQLVPMY-----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSL 586
               L+   P+Y      D  S + V+Q++   +E AGL+KFDFLGL TLT+L   ++ +
Sbjct: 531 APGRLTDFCPLYTQGAQNDGMSGV-VSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYI 589

Query: 587 DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             L       + S IP DD   + +L T  T+ +FQLES GM+  L+  +PD  EDIIAL
Sbjct: 590 RRLDPSKADWNCSHIPLDDGPAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIAL 649

Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
           V+LYRPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYS
Sbjct: 650 VALYRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYS 709

Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
           L  AD+LRRAMGKK  EEM + +  F  GA KNG+S   A +IF+L+ KFA YGFNKSHA
Sbjct: 710 LGGADLLRRAMGKKKPEEMAQHRVMFREGADKNGLSAQQADDIFDLMEKFAGYGFNKSHA 769

Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
           AAYA+++Y TAW+K H+P EF+AA+M+L MD+ +K+K   +D +   + ++PP VN    
Sbjct: 770 AAYALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYEDCKLNKLAVLPPDVNASEY 829

Query: 827 DFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F   D + I Y L  IKG G      I+ A  ++PF  L DFC RVD +++NRR +E+L
Sbjct: 830 RFAPTDPKTIRYGLGGIKGSGQGAIEDILRAREERPFTDLFDFCERVDRRQVNRRTIEAL 889

Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
           + AGA D    +R QLL S+    + A+  +K  +    ++F    G   D    E    
Sbjct: 890 IRAGAFDSLNDNRAQLLASVPIAMEAAE--QKAESANQVSLF-DLMGDAGDAHRPELLDE 946

Query: 946 ENSSVR--FENEQRVLGFYFSGHPLDVYKPILRK 977
              S +   + E++ LG+YFSGH  D Y+  +R+
Sbjct: 947 PRWSPKRTLQEEKQALGYYFSGHLFDAYRDEVRR 980


>gi|285018805|ref|YP_003376516.1| DNA polymerase III, alpha chain protein [Xanthomonas albilineans
           GPE PC73]
 gi|283474023|emb|CBA16524.1| probable dna polymerase III, alpha chain protein [Xanthomonas
           albilineans]
          Length = 1198

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/1010 (40%), Positives = 608/1010 (60%), Gaps = 66/1010 (6%)

Query: 11  FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56
           F HL +H+ +SL +  + +               N+L +      PA+A+TD NNLF+ +
Sbjct: 6   FAHLHIHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNNLFALV 65

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           +F + A   GI+PI G         +L + +  + P+     + +L    +GY  L  L+
Sbjct: 66  KFYKAAEGVGIKPIAGA--------DLLIADGSQAPW----RLTVLCRNRDGYLSLSRLL 113

Query: 117 SRMYLLDQGKQS---VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
           +R +L  +G +S   V +   WLQ  G++ L  L G +S    R        +AE++L  
Sbjct: 114 TRAWL--EGHRSEGGVALRPEWLQS-GSDNLFALAGRNS-LAGRLASEGRHDLAEQQLAD 169

Query: 174 FKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
           ++++FGD L++ L R  R  +       +  A    LP+VA+N+  FL   D+ AH+  +
Sbjct: 170 WQRIFGDGLHLELTRTGRDGEEAFNQFALHAAGMRGLPVVASNDVRFLYASDFAAHEARV 229

Query: 233 AVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
            ++   V+    RPR   D  YLK+  EM ++F+D+P+AL+NT+ +A+RC+  +Q+    
Sbjct: 230 CISSGRVLDDPKRPREYSDQQYLKSAEEMAALFADIPDALDNTLALAQRCNLQMQLGTYF 289

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
           LP +   + + +    ++ +R+++  GL  RL +  +A G   QDY +RL+FEL+ I +M
Sbjct: 290 LPAYPVPDDETL----DSWIRSQSRDGLAARLEKHPLAPGKTRQDYVERLEFELDTIIKM 345

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            F GYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+
Sbjct: 346 GFPGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPE 405

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R+SMPDFDIDFC DRRDEVI YV  KYG +RV+QIIT+G++ AKA +RD GR L  PY  
Sbjct: 406 RVSMPDFDIDFCMDRRDEVIDYVARKYGRDRVSQIITYGTMAAKAVVRDCGRVLGFPYGL 465

Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP----------SVDRLLEISQKLEGL 521
           VD + KLIPN     ++L+    + +  ++ +A P           V  L++++++LE L
Sbjct: 466 VDGVAKLIPN--ILGITLKDAMGEGK--DSEMAAPELIQRYQSEEDVRDLIDLARQLEDL 521

Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLK 577
            R+A  HA G+VI   PLS   P++ +   D     PVTQF+   +E+ GL+KFDFLGL+
Sbjct: 522 TRNAGKHAGGVVIAPTPLSDFCPLFAEHDVDHLGKNPVTQFDKDDVEQVGLVKFDFLGLR 581

Query: 578 TLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQA 631
           TLT++  ++  +  R  +     V+++ IP DD  TY  +   G+ G +FQ ESSGMR+ 
Sbjct: 582 TLTIIDWAVKAINVRHARAGIPAVEITAIPLDDVPTYKDIFASGSTGAVFQFESSGMRRL 641

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
           L+  +PD  ED+IALVSLYRPGP+D I  +N RK+G++ I+   P  + +LK+T G+++Y
Sbjct: 642 LKDAKPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQAILYPDPRTEAILKDTYGIMVY 701

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QEQVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+ +  A  IF+
Sbjct: 702 QEQVMQMAQIVGGYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVGEAKADEIFD 761

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
           L+ KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R 
Sbjct: 762 LMEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRN 821

Query: 812 FNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFC 869
             + + PP +N     F+    + I Y L AIKGVG      I+ E      + SL DFC
Sbjct: 822 LGLTVRPPRINASAYMFEAATPDTIQYGLGAIKGVGRGACEAIVAERERGGAYISLMDFC 881

Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
           +RV+S KLN+R LE+L+ AGA+D    +R  L+  L  + K  + + + R +   ++F +
Sbjct: 882 TRVESAKLNKRTLEALIHAGAMDGLDSNRATLMLQLPEVMKATEQMARERASGQNSLFGN 941

Query: 930 -EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
            +    +  + L +            E+  LGFY SGHP D Y+  +R++
Sbjct: 942 ADTSAPALHLNLPESKEWPLGQLLAGERETLGFYLSGHPFDPYREEVREL 991


>gi|149907538|ref|ZP_01896285.1| DNA polymerase III subunit alpha [Moritella sp. PE36]
 gi|149809208|gb|EDM69137.1| DNA polymerase III subunit alpha [Moritella sp. PE36]
          Length = 1159

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1056 (39%), Positives = 614/1056 (58%), Gaps = 61/1056 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL +HS +S+++  + +  +  ++     PAIA+TD  N+ + ++F      AG++
Sbjct: 4    PRFIHLHLHSEFSMVDSLVRMKRLAPRLQELNMPAIALTDQTNMCALVKFYGAMQRAGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   D  +Q       Q K        + +L    +GY  +  L+S+ Y        
Sbjct: 64   PIIGA--DFWVQSEEYPEEQFK--------LTVLAKDNKGYNNITVLISKAYSRGHVDGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E   EG+I+L+G  +G I +A    +  +A + L  ++  F D  Y+ L R
Sbjct: 114  AIIDKAWLAE-HAEGVILLSGARNGDIGKALLKGNDALARQCLTFYQAHFPDSYYLELIR 172

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V  A  H+LP+VATN+ +FL  ++++AH++ +++     +  K RPR
Sbjct: 173  TGRQDEEAYLHMAVDFASQHQLPVVATNDVVFLHADEFDAHEIRVSIHDGYTLEDKRRPR 232

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CDDI 303
            + + + YL++  EM  +F+D+PEAL N+VEIA+RC+  +++    LP F   E    D +
Sbjct: 233  LYSKEQYLRSEDEMCELFADIPEALANSVEIAKRCNATVRLGEYFLPNFPTGELSTADFL 292

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             K  E+ L    V  L+      A  +      Y  RL+ EL VI  M F GYFLIV +F
Sbjct: 293  VKVSEDGL----VERLDFLFPDPA-ERERQRPAYEDRLEIELKVINDMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KLIP DP
Sbjct: 408  MDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPGDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   + R  E    D  V  L+++++ LEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLA-KAWDVEPRLDEMYQGDEEVRALVDMARILEGVIRNAGKHAGGVVISPTVITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF----LAQRGVK-VDL 598
            P+Y D   + PVTQF+   +E+AGL+KFDFLGL+TLT++Q +LD     L ++G K + +
Sbjct: 527  PLYCDDSGNNPVTQFDKNDVEEAGLVKFDFLGLRTLTIIQWALDMANPHLVKQGKKEIRI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I   D   + LL    T  +FQLES GM+  +  ++PD  ED+IALV+L+RPGP+ + 
Sbjct: 587  ESIDITDRRCFDLLQRSETTAVFQLESRGMKDLIRRLKPDSFEDMIALVALFRPGPLQSG 646

Query: 659  VVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +V N  +RK+G+E++          S+  ++DP    T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 647  MVDNFIDRKHGREEVSYPDAQYQHESLKEILDP----TYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM+KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMEKQRGTFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT WMKTHYP  F+AA M+ +MDN EK+     +  +  + ++PP VN     
Sbjct: 763  AYALVSYQTLWMKTHYPSYFMAAVMSADMDNTEKVVTLVDEVERMGLTLLPPDVNKGLFK 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D+ I Y + AIKGVG      I+ A  +   F  L DFC+RV+ KK+++R++E L
Sbjct: 823  FNVQEDHTIIYGIGAIKGVGEGPIDAIIAARESGGEFTDLFDFCNRVNLKKISKRIMEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            ++AGALD  G  R  L  +L    K A            ++F          +T E   +
Sbjct: 883  IYAGALDKLGPHRAALHATLPEAMKAAAQHAMAEAYGQSDLFG--------ILTTEPEEI 934

Query: 946  EN---------SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            E+           V  E E+  LG Y +GHP++ Y   +++      ++   T RG  + 
Sbjct: 935  ESKFADVPEWPDKVWLEGERETLGLYLTGHPINQYIKEVKRYSTNRLKDVKPTERGKVVT 994

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +V+S Q K T+KG+R+G +   + +      FF
Sbjct: 995  AVGLVISAQVKVTKKGTRMGILEIDDKSGRLSVMFF 1030


>gi|71900814|ref|ZP_00682933.1| DNA polymerase III alpha subunit [Xylella fastidiosa Ann-1]
 gi|71729435|gb|EAO31547.1| DNA polymerase III alpha subunit [Xylella fastidiosa Ann-1]
          Length = 1193

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/1054 (39%), Positives = 630/1054 (59%), Gaps = 74/1054 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLF 53
            + SFVHL +H+ +SL +  + +               N+L +      PA+A+TD NNLF
Sbjct: 3    TSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNLF 62

Query: 54   SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
            + ++F + A   GI+PI G  L I   ++         P+     + LL     GY  L 
Sbjct: 63   ALIKFYKAAETVGIKPISGADLLIAEPEH--------PPW----GMTLLCRDHAGYLNLS 110

Query: 114  ELVSRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
            +L+SR +L     +  V +   W+++   + L  L G  S    + F    + +AE++L 
Sbjct: 111  QLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIGRHS-LAGQLFAKGRADLAEQQLA 168

Query: 173  TFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             ++++FGD L++ L R  R  +       +Q+A    +P++A+N+  FL   D+ AH+  
Sbjct: 169  DWQRVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEAR 228

Query: 232  MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +A   ++    RPR  +   YL++  EM ++F+D+P+AL+NT  +A+RC+  +++   
Sbjct: 229  VCIASGRMLDDPKRPRTYSEQQYLRSSEEMATLFADIPDALDNTRTLAQRCNIEMRLGTY 288

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             LP +     + +    ++ +R ++  GLE RL +  +A G   +DY  RL+FEL+ I +
Sbjct: 289  FLPNYPVPNDETL----DSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTIIK 344

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M FSGYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP
Sbjct: 345  MGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLNP 404

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFDIDFC +RRDEVI YV  KYG ERV+QIIT+G++ AKA +RDVGR L  PY 
Sbjct: 405  ERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYG 464

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFRE---ARL-----ADPSVDRLLEISQKLEGLY 522
             VD + KLIP+     ++L+    +    +   A L     A+  V  LL ++++LE L 
Sbjct: 465  LVDSVAKLIPSTLG--ITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLT 522

Query: 523  RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PL++  P++     + R   PVTQF+   +E+ GL+KFDFLGL+T
Sbjct: 523  RNAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRT 582

Query: 579  LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  + +R  +     VD++ +P DD  TY  +  +  T  +FQ ESSGMR+ L
Sbjct: 583  LTIIDWAVKAINKRHARACIDPVDITALPLDDLPTYKDIFASGNTSAVFQFESSGMRRLL 642

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +  RK+G ++ +   P    +LK+T G+++YQ
Sbjct: 643  KDARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQ 702

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+    A  IF+L
Sbjct: 703  EQVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDL 762

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  +AR  
Sbjct: 763  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNL 822

Query: 813  NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
            N++++ P++N     F+    + I Y L AIKGVG +    I++      P+ SL DFC+
Sbjct: 823  NLKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCT 882

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929
            RV S KLNRR LE+++ AGALD  G +R  ++  L  + K  + + + R +   ++F + 
Sbjct: 883  RVTSAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNA 942

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVA 988
            + GT + ++ L +      +     E+  LG YFSGHP D Y+  ++++ G      ++ 
Sbjct: 943  DPGTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALE 1002

Query: 989  TI-----RGN----------NIRLAAMVVSKQQK 1007
             I     RGN          N  LA +VVS ++K
Sbjct: 1003 RILSSQQRGNGEKRTWQPEVNTILAGLVVSVRRK 1036


>gi|332108545|gb|EGJ09769.1| DNA polymerase III, alpha subunit [Rubrivivax benzoatilyticus JA2]
          Length = 1169

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1009 (41%), Positives = 582/1009 (57%), Gaps = 68/1009 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL+ H+ YS+++G L +++      AD QPA+AITD +NLF A++F +    AG++PI
Sbjct: 3   FVHLRTHTEYSVVDGTLRIDDAAGAAKADGQPALAITDLSNLFGAIKFYKACRGAGVKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPS-----IVLLVSTAEGYQRLIELVSRMYLLDQG 125
           +G  + +D             P P         + LLV    GY  L EL++R +  +  
Sbjct: 63  VGVDVWMD-------------PLPDAAERQPTRLALLVQDRGGYLNLCELLARAWTKNVQ 109

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
           +    +   WL E+ + GLI L+G   G + +A      Q A         +F  R Y+ 
Sbjct: 110 RNQAWVKWEWLHEL-SGGLIALSGADMGAVGQALLAGDEQRAAAAARELASIFPGRFYLE 168

Query: 186 LQR-----HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
           LQR     H  + R      V LA    LP+VAT+   FL  +D+EAH+  + +A    +
Sbjct: 169 LQRAGLPTHEAHVR----AAVPLAARLGLPVVATHPIQFLEPDDFEAHEARVCIAEGETL 224

Query: 241 SQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
           +   R  R T + + K  ++M S+F+D+P A+ NTVEIARRCS  L +  P LP F   +
Sbjct: 225 ANPKRIKRFTREQHFKTAAQMESLFADVPSAIANTVEIARRCSLTLVLGKPRLPDFPTPD 284

Query: 300 CDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              I    +   R  +  GLE RL         +     +Y +RL+FEL+ I +M F GY
Sbjct: 285 GSPI----DVYFRKASHEGLEKRLVALFPKEEEREKRRPEYVERLEFELDTILKMGFPGY 340

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
           FLIV+DFI WAK N  PVGPGRGSGAGS+ AYAL ITD+DPL++ LLFERFLNP+R+SMP
Sbjct: 341 FLIVSDFIVWAKANGCPVGPGRGSGAGSLVAYALFITDLDPLQYKLLFERFLNPERVSMP 400

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           DFDIDFCQ  RD VIRYV+ KYG + V QI TFG++ AKAALRDVGR L M Y  VD + 
Sbjct: 401 DFDIDFCQGNRDRVIRYVKEKYGRDAVGQIATFGTMAAKAALRDVGRVLGMGYGHVDSIA 460

Query: 477 KLIPNDPAHPVSLQAIAD--DSRFREARLADPSVDR----------LLEISQKLEGLYRH 524
           KLIP  P   V+L  + +  D     AR  +P +DR          LL ++ ++EG+ R+
Sbjct: 461 KLIPAPPGKTVTLAKVPEKPDPGIIYARQEEPEIDRREAAEEEVAELLSLATRVEGMVRN 520

Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
              HA G++I    ++   P+Y+   SD  V+Q++   +E  GL+KFDFLGL TLT+L+ 
Sbjct: 521 IGMHAGGVLIAPGKITDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILEL 580

Query: 585 SLDFL-AQRGVKVDLS--LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
           +  F+ A+R    D S   +P DD   Y L +   T  +FQ ES GM+  L   +P  +E
Sbjct: 581 ARQFIVARRPNMKDFSYETLPLDDQRVYKLFSDGLTEAVFQFESRGMQGMLREAKPSRLE 640

Query: 642 DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
           D+IAL +LYRPGP+D I  +  RK+GKE +   HPL++ +L ET GV++YQEQVMQ AQ+
Sbjct: 641 DLIALNALYRPGPMDLIPTFVARKHGKETVEYPHPLLETVLGETYGVMVYQEQVMQTAQV 700

Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
           L GYSL  AD+LRRAMGKK  EEM + +  F  GA+K  I +  A  +F+L+ KFA YGF
Sbjct: 701 LGGYSLGGADLLRRAMGKKKPEEMAQHRVIFREGAAKKDIPEAKADEVFDLMEKFAGYGF 760

Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
           NKSHAAAY++++Y TAW+K H   EF AA+MT+E DN +K+K    DA+ F I+  PP V
Sbjct: 761 NKSHAAAYSLLAYHTAWIKVHCTAEFFAANMTIEADNTDKLKVLLADAKLFGIRFDPPDV 820

Query: 822 NTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK------PFDSLEDFCSRVDS 874
           NT  + F+ + D RI Y L A+KG G      I+ A   +      PF SL DFC+RVD 
Sbjct: 821 NTGTLRFEPIEDKRIRYGLGAVKGTGAGAIEAIVAAREGRAGDGGGPFRSLFDFCARVDR 880

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI---FAHEK 931
           +++N+RV+E+L+ AGA D     R   L S   +    +W +    NK +     F    
Sbjct: 881 QRVNKRVVEALIKAGAFDSLHADRAATLAS---VGLAFEWADTQAANKDQGGLFDFGDAH 937

Query: 932 GTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKM 978
           G+ + +  L   +VE  SV  R   E+  +GFY SGH  D  +  +RK 
Sbjct: 938 GSSTQEPAL--VAVEPWSVRERLMQEKIAIGFYLSGHLFDACRDEVRKF 984


>gi|307729084|ref|YP_003906308.1| DNA polymerase III subunit alpha [Burkholderia sp. CCGE1003]
 gi|307583619|gb|ADN57017.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1003]
          Length = 1199

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/1028 (39%), Positives = 620/1028 (60%), Gaps = 52/1028 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL++HS +S+ +G + L++++   A D Q A+A+TD  N F  + F ++A   G++
Sbjct: 7    PRFVHLRLHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+  L +Q +  
Sbjct: 67   PIAGC--------DVWITNPDDRDKPS--RLLLLVKDRRGYLNLCELLSKASLTNQYRGR 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   WL+    EGL+ L+G   G +  A    + + A++  L + K+F    Y+ LQR
Sbjct: 117  AEVEAGWLESGLGEGLLALSGAQQGDVGLALAAGNQEAAKRNALHWAKVFPGGFYIELQR 176

Query: 189  --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
                G ++Y + Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++   R 
Sbjct: 177  CGQPGGEQYVQ-QAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRQ 235

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R TP+ Y + + EMV++F+D+P AL N+VEIA+RC+  L++  P LP F   +   +  
Sbjct: 236  KRFTPEQYFRTQDEMVALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 293

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L + +  GLE RLAQ       +    + Y QRL+FE   + +M F GYFLIVAD
Sbjct: 294  --DDYLVHLSKQGLETRLAQLYPDEAERAAQRETYYQRLEFECGTVIKMGFPGYFLIVAD 351

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 352  FINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDF 411

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 412  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 471

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LLE++Q++EG+ R+   HA G++I    L+ 
Sbjct: 472  PGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGITRNVGMHAGGVLIAPGKLTD 531

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +    K D SL
Sbjct: 532  FCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKKDWSL 591

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPGP+D I
Sbjct: 592  AQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLI 651

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 652  PSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 711

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM + +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 712  KKKPEEMAQHRELFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 771

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+M+L MD+ EK+K   +D     + ++PP +N     F+     D + 
Sbjct: 772  LKAHHPAEFMAANMSLAMDDTEKVKILFEDCIANKMTVLPPDINLSAYRFEPVAEADGKR 831

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  D  F  + DFC+R+D + +NRR +E+L+ AGA 
Sbjct: 832  SRTIRYGLGAIKGSGQNAIEEILRAREDGAFIDIFDFCNRIDRRVVNRRTVEALIRAGAF 891

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--SDKITLEKFSVEN-- 947
            D    +R QL+ S+    + A+    N         A + G F   D  +     V+   
Sbjct: 892  DSLHANRAQLIASVSLAMEAAEQASAN---------ALQAGLFDMGDAPSQGHELVDEPE 942

Query: 948  --SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004
                 + + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A +V S 
Sbjct: 943  WPEKKKLQEEKAALGFYLSGHLFDAYRDEVRRF----VRQKIGELKEGRDKLVAGIVASL 998

Query: 1005 QQKKTRKG 1012
            + + T++G
Sbjct: 999  RTQMTQRG 1006


>gi|160898940|ref|YP_001564522.1| DNA polymerase III subunit alpha [Delftia acidovorans SPH-1]
 gi|160364524|gb|ABX36137.1| DNA polymerase III, alpha subunit [Delftia acidovorans SPH-1]
          Length = 1194

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1002 (41%), Positives = 580/1002 (57%), Gaps = 51/1002 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   +N I+   A D Q A+A+TD NNLF  ++F ++  A G++P+
Sbjct: 19   FVHLRLHTEFSVVDGTNRINAIVKAAAEDGQVALAVTDFNNLFGGVKFYREGRAKGVKPV 78

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ I+ ++              V  I++LV +  GY  L EL++R +  +  K    
Sbjct: 79   LGAEIQIEGENG-----------AAVSRIIVLVQSPLGYHNLSELLARGWTRNVVKGQAV 127

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
               +WLQE+G EGLI+L G  +GP+ +A        A         +F  R ++ LQR  
Sbjct: 128  HTWAWLQELG-EGLIVLAGAQAGPVGQALMRGDEAGAAAVAQRLASMFPHRFFIELQRAG 186

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D       VQLA    LP+VAT+   F   +DYEAH+  + +A   +++   R  R 
Sbjct: 187  RPDDEAHVLAAVQLADRLNLPVVATHPIQFFGPDDYEAHEARVCIAEGEILANPKRVRRF 246

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T D + K  ++M ++F+D+P A+ NTVEIARRCS  L +  P LP F     D +  +E 
Sbjct: 247  TRDQHFKTAAQMQALFADIPSAIANTVEIARRCSLTLVLGKPQLPNF--PVPDGMTMDEF 304

Query: 309  NELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R+++  GLE RL         +      Y +RL+FE+  I +M F GYFLIV DFI+
Sbjct: 305  --FRSESFNGLEDRLTHLYPDPAKREAQRPRYVERLEFEIGTILKMGFPGYFLIVGDFIK 362

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AY L ITD+DPL ++LLFERFLNP+R+SMPDFD+DFCQ 
Sbjct: 363  WAKLNGCPVGPGRGSGAGSLVAYVLKITDLDPLEYNLLFERFLNPERVSMPDFDVDFCQA 422

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV+  YG + V+QI TFG++ A+AA+RDVGR L M Y+  D + KLIPN P  
Sbjct: 423  NRDRVIDYVKQLYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGL 482

Query: 486  PVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             V+L+              AI  +    E    +  V  L+E++QKLEG+ R+   HA G
Sbjct: 483  HVTLKYPPNPKKEGDKYTYAIEAEPMLAERIEKEEDVKTLIEMAQKLEGMTRNIGMHAGG 542

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI    L+   P+Y+   SD  V  ++   +E  GL+KFDFLGL TLT+L+ + +F+ +
Sbjct: 543  VVIAPGKLADFCPLYQQPGSDSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIIK 602

Query: 592  RGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R    +      IP DD  TY L +   T  +FQ ES GM+  L   +P  +ED+IAL +
Sbjct: 603  RHKGQENFAFENIPLDDARTYQLFSEGKTEAVFQFESRGMQGMLRDAKPSRLEDLIALNA 662

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK+GKE +   HPL++ +L ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 663  LYRPGPMDLIPSFVARKHGKEVVEYPHPLVEQVLAETYGIMVYQEQVMQTAQVLGGYSLG 722

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM   +  F  GA+K GIS+  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 723  GADLLRRAMGKKKVEEMVMHRGIFREGAAKQGISEEKADEVFDLMEKFAGYGFNKSHAAA 782

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y++++Y TAW+K HY  EF   +MT+EMDN +K+K   +DA +  I   PP VN     F
Sbjct: 783  YSLLAYHTAWLKVHYTAEFYCGNMTVEMDNTDKLKVLYEDALKMGISFEPPDVNRGMYRF 842

Query: 829  K-VGDNRIYYSLAAIKGVGTTTARHIMEA---------SADK-PFDSLEDFCSRVDSKKL 877
            + V D  I Y L AIKG G      I+ A          ADK PF SL DFC RVD  +L
Sbjct: 843  EPVTDKVIRYGLGAIKGTGQQAIEAIVAAREGRGVGPRGADKGPFKSLADFCVRVDRTRL 902

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ--WVEKNRTNKHENIFAHEKGTFS 935
            N+R LE+L+  GA D    +R  L+ S+D+  ++        N+    + +     G+ +
Sbjct: 903  NKRTLEALIKGGAFDAIELNRASLVASIDHAFEFGNKTLANANQGGLFDMMGDDAVGSST 962

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
             +  L +        R   E+  +GFY SGH  D  +  +R+
Sbjct: 963  QEPPLVEALPWGVKERLTQEKTAVGFYLSGHLFDEVEKEVRR 1004


>gi|124267439|ref|YP_001021443.1| DNA polymerase III subunit alpha [Methylibium petroleiphilum PM1]
 gi|124260214|gb|ABM95208.1| DNA polymerase III, alpha subunit [Methylibium petroleiphilum PM1]
          Length = 1174

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/996 (42%), Positives = 588/996 (59%), Gaps = 46/996 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +  SPSFVHL+ H+ YS+++G L +++++   AAD+QPA+AITD +NLF A++F   A  
Sbjct: 1   MTSSPSFVHLRTHTEYSVVDGMLRVDDMVAAAAADEQPALAITDLSNLFGAIKFYGAARG 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QP+IG  L ++ + + K  ++          ++LLV    GY  L EL+S  +   +
Sbjct: 61  KGVQPLIGADLWLEAESDEKQPSR----------LLLLVQNRTGYLNLCELISHAWT--E 108

Query: 125 GKQSVRICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             Q  + C++W Q     +GLI L+G   G +  A     +  AE + L    LF  R Y
Sbjct: 109 NLQRHQACVAWPQLAKHGDGLIALSGADLGAVGLALLAGDAVRAEAQALRLAALFPGRFY 168

Query: 184 VNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           + LQR  +  +  +   VV LA    LP+VAT+   FLS +D+EAH+  + +A    ++ 
Sbjct: 169 LELQRAGQAGNEAQVRAVVPLAAKLGLPVVATHPVQFLSADDFEAHEARVCIAEGETLTN 228

Query: 243 KDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             R  R T + + K  ++MV +F+D+P A+ NT+ IARRC   L +  P LP F     D
Sbjct: 229 PRRVKRFTREQHFKTAAQMVELFADIPSAIANTLAIARRCHLTLTLGKPQLPDFPTPIVD 288

Query: 302 DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
             +   ++  R+ + AGL  RLAQ       +  H   Y +RLDFE+  I +M F GYFL
Sbjct: 289 GQRMAPDDYFRHASHAGLNERLAQLYPNEDERERHRARYVERLDFEIETILKMGFPGYFL 348

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           IVADFI WAK N  PVGPGRGSGAGS+ AYAL ITD+DPL ++LLFERFLNPDR+SMPDF
Sbjct: 349 IVADFINWAKGNGCPVGPGRGSGAGSLVAYALKITDLDPLAYNLLFERFLNPDRVSMPDF 408

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           DIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAALRDVGR L M Y  VD + KL
Sbjct: 409 DIDFCQGNRDRVIDYVKQKYGRDAVSQIATFGTMAAKAALRDVGRVLGMGYGHVDSIAKL 468

Query: 479 IPNDPAHPVSLQAIAD--DSRFREARLADPSVDR----------LLEISQKLEGLYRHAS 526
           +P  P   V+L+   D  D     AR   P +++          LL +++++EG  R+  
Sbjct: 469 VPAPPGKTVTLKRPGDRPDPGLIYARKEAPEIEQREQKEEEVAELLALAERVEGTVRNIG 528

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            HA G++I    ++   P+Y+   SD  V+Q++   +E  GL+KFDFLGL TLT+L+ + 
Sbjct: 529 MHAGGVLIAPGKITDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILELAK 588

Query: 587 DFLAQRGV-KVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
           DF+  R   + D +   I  DD +TY LL+   T+ +FQLES GM+  L   +P   EDI
Sbjct: 589 DFIRTRHADRADFAFENIALDDRKTYQLLSEGKTVAVFQLESRGMQGMLREARPSVFEDI 648

Query: 644 IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
           IALV+LYRPGP+D I  +  RK+GKE++   HPL+  +L+ET G+++YQEQVMQ+AQ L 
Sbjct: 649 IALVALYRPGPMDLIPSFCARKHGKEEVDYPHPLMREVLEETYGIMVYQEQVMQVAQRLG 708

Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
           GYSL  AD+LRRAMGKK  EEM K +  F  GA+KNGI   +A  IF+L+ KFA YGFNK
Sbjct: 709 GYSLGGADLLRRAMGKKKAEEMAKHRVIFAEGAAKNGIGAGLANEIFDLMEKFAGYGFNK 768

Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
           SHAAAYA+++Y TAW K HY  EF AA+M++ +D+ +K+K F  DA    +    P VN 
Sbjct: 769 SHAAAYALLAYHTAWAKVHYLAEFTAANMSVALDDTDKLKIFHDDAVSLGVVFEAPDVNA 828

Query: 824 ------PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876
                 P         R+ Y L AIKG G      I++A  +  P+ SL DF +RVD  +
Sbjct: 829 GGYRFEPVAPQGKERGRVRYGLGAIKGTGQGAIEAIVDARREGGPYKSLFDFAARVDRSR 888

Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS- 935
           +N+RV+E+L+  GA D     R  L+ S+    +YA     N        F       + 
Sbjct: 889 VNKRVVEALIKGGAFDALEADRAVLMASVPLAFEYADTQAANADQGGLFDFGDSHAASTN 948

Query: 936 --DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             D +  E +S++    R  +E+  LGFY SGH  D
Sbjct: 949 EPDLVATEAWSIKE---RLTHEKAALGFYLSGHLFD 981


>gi|242280805|ref|YP_002992934.1| DNA polymerase III, alpha subunit [Desulfovibrio salexigens DSM 2638]
 gi|242123699|gb|ACS81395.1| DNA polymerase III, alpha subunit [Desulfovibrio salexigens DSM 2638]
          Length = 1175

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/1055 (38%), Positives = 620/1055 (58%), Gaps = 49/1055 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA+ + ++  +      PA+AITD  ++F A+ F   A   GI+PI
Sbjct: 4    FVHLHVHTEYSLLDGAIRIKDLCQQAKDFGMPAVAITDHGSMFGAVTFYMTAMDMGIKPI 63

Query: 71   IGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IGC++ +   D+ D L  T + K        +VLL    +GY+ +I+L S  +L  +G  
Sbjct: 64   IGCEVYVAPGDIDDELAHTRKDKK---GRYHLVLLAKNQQGYKNIIKLCSLGFL--EGFH 118

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                   +L    +EG+I L+   +G + RA          +   T++ +F    Y+ +Q
Sbjct: 119  YKPRVSKYLLNKYSEGVIALSACLAGEVPRALMNEGLDAGIEMAKTYESIFPGNFYLEVQ 178

Query: 188  RHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   ++   ++++ + A    LPLVATN+  +L++EDYEAHD+L+ +   T V  + R 
Sbjct: 179  ANGLKEQEDLNELIYKCAEQTGLPLVATNDCHYLTKEDYEAHDLLLCIQTQTTVDAEKRF 238

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R+  D  Y K + E    F+ +PEA+ NT +IA  C+  +++     P +   E   I  
Sbjct: 239  RMGTDQLYFKPQEEFEEYFAHVPEAIANTQKIAEMCNLEIELGNYYFPEYELPEGMTI-- 296

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E E       GL+ R+             Y +RLD+EL VI  M F  YFLIV DFI 
Sbjct: 297  --ETEFVKLCKEGLQKRIENAPYE--IDEAKYWERLDYELGVINEMGFPAYFLIVQDFIN 352

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N IPVGPGRGS AGS+ A+AL IT++DP+ + LLFERFLN +R+SMPD D+DFC+ 
Sbjct: 353  WAKDNRIPVGPGRGSAAGSIVAWALRITNLDPIPYDLLFERFLNVERVSMPDIDVDFCER 412

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA- 484
            RR EV++Y   KYG + VAQI T+G+++ KA ++DVGRA+ M +S+ D + KL+P+DPA 
Sbjct: 413  RRLEVVKYCSEKYGWDHVAQITTYGTMKTKAVIKDVGRAMGMHFSETDPIAKLVPDDPAV 472

Query: 485  -------------HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                          P +++AI + S        DP + +L++I+ +LEG+ RHASTHAAG
Sbjct: 473  IAQGLGVKKAKITVPNAVEAIPELSNMVA---TDPKIAKLMDIATRLEGMSRHASTHAAG 529

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI D+P++  +P+Y+  + ++ VTQ++MK +EK GLIKFDFLGL+T+T+++  LD +  
Sbjct: 530  VVISDKPMTDYLPLYKGKKGEI-VTQYDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIRL 588

Query: 592  RGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            +G +  DL  +  DD +T+ +     T G+FQ+ESSGMR+ L  ++P C EDIIA+++LY
Sbjct: 589  QGKEAPDLDTLTLDDQDTFDIFCKGDTDGVFQVESSGMRKYLRMLRPSCFEDIIAMLALY 648

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+ + +V  +  RK+G+ ++  + P ++P LK T GVI+YQEQVM  A  ++ YSL 
Sbjct: 649  RPGPLGSGMVDEFIKRKHGEIEVTYLWPTLEPSLKPTYGVIVYQEQVMGAAMTIANYSLG 708

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E D+LRRAMGKKI EEM K + RF+ GA +N I +  A +IF+L+ +FA YGFNKSH+AA
Sbjct: 709  EGDLLRRAMGKKIPEEMAKHRVRFVDGAKENNIPEQTANDIFDLMEQFAAYGFNKSHSAA 768

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+ISY TA++K H+PVEF+AA M+ EM+N EKI  +    R  ++ +  P +N     F
Sbjct: 769  YALISYYTAYLKAHFPVEFMAALMSTEMNNTEKIIMYINACRDMDVTVRQPDINLGVARF 828

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V +  I Y +A IK VG      I+E    + PF    DF +RV+ +++ +RV+E L+ 
Sbjct: 829  SVYEGDIIYGMAGIKNVGEEAIDEIVEERQKNGPFKDFIDFITRVNLRRVTKRVIEYLIR 888

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK----ITLEKF 943
            AGA D  G +R  L+ SLD    Y Q   K + +   N+     G    +    ++ E+F
Sbjct: 889  AGAFDSMGLTRSGLIASLDKAVSYGQKKNKEKESGMINMLDMLGGGGEAEEPAVVSFEEF 948

Query: 944  SV----ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
            ++    +    R E E   LGFY + HPL  Y+  + ++G++  E          I+L A
Sbjct: 949  NMPEMDDKEMQRLEKE--ALGFYLTCHPLLSYRNEMSRLGLQTIENCPNLAHEATIKLGA 1006

Query: 1000 MVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
            ++   ++  T+K G ++ + T  +     E   FP
Sbjct: 1007 IITGYKEIITKKSGKKMAFATIEDMTGSGELIIFP 1041


>gi|262197244|ref|YP_003268453.1| DNA polymerase III subunit alpha [Haliangium ochraceum DSM 14365]
 gi|262080591|gb|ACY16560.1| DNA polymerase III, alpha subunit [Haliangium ochraceum DSM 14365]
          Length = 1174

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1060 (39%), Positives = 623/1060 (58%), Gaps = 52/1060 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL +H+ YSLL+GA+ + ++  K+      ++A+TD  N+F A++    A   G++ 
Sbjct: 3    AFTHLHLHTQYSLLDGAIRVKDLFPKVLELGMDSVAVTDHGNMFGAVDLYTAAREHGVKM 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I GC+  I   D    TN+          +VLL     GY+ L   ++ M  L+    + 
Sbjct: 63   IFGCETYIAASDRFDRTNRRSY------HMVLLAKDQVGYKNL-SFLNSMGYLEGFYYNP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            RI    L+E  +EGLI ++    G + +      +  AE   L ++ +FG    Y+ +  
Sbjct: 116  RIDKKILRE-HSEGLIGMSACLGGEVAQTLLKQGTAEAEAVALEYQDIFGKGNFYLEMMG 174

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            ++  ++ +  + + +++    +PLVATN+  ++S++D  AH++L+++      S   R R
Sbjct: 175  NQLEEQQQLNADLKRMSRKLGIPLVATNDCHYVSQQDAHAHEILLSIQTGKTTSDDKRLR 234

Query: 248  VTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             T D Y LKN +EM   FSD+PEA+ENTV+IARRC+  L +    LP +   E   +   
Sbjct: 235  HTVDSYFLKNAAEMEVDFSDVPEAMENTVDIARRCNVELDLGNTFLPNYKVPEGMSV--- 291

Query: 307  EENELRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E+ L      GLE R  +   I + +    YR+RL  EL VI +M F GYFLIV DFI 
Sbjct: 292  -ESYLEKVVFDGLERRFRELSEIGRSFDPDQYRERLRHELGVINKMGFPGYFLIVWDFIN 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK++NIPVGPGRGSGAGS  A+A+ ITDIDPL F LLFERFLNP+R+SMPDFD+DFC +
Sbjct: 351  WAKEHNIPVGPGRGSGAGSCVAWAMRITDIDPLEFKLLFERFLNPERVSMPDFDVDFCMN 410

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA- 484
            RRDEVI YV+ KYG + V QI TF  L+A+  +RD+ R +++PY++ D+L KL+P DP  
Sbjct: 411  RRDEVIDYVKRKYGEKNVGQIATFHQLKARGVIRDIARVMELPYAEADKLAKLVP-DPVG 469

Query: 485  --HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               P    AI  +   +     DP +  LL+++  LEGL RH   HAAG+VI + PL + 
Sbjct: 470  GKSPPVRDAIEQEPELKRLYNEDPKMRDLLDVAASLEGLNRHVGMHAAGVVIAEDPLWEY 529

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP +R    ++ VTQF MK  EKAGL+KFDFLGLKTLT++  ++  + ++       L  
Sbjct: 530  VPCFRGQNGEI-VTQFAMKEAEKAGLVKFDFLGLKTLTVIHTAVRLINEQREAAGEPLFD 588

Query: 603  FD-----DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
             D     D   Y +++   T G+FQLESSG R+ L  ++PD +EDI+A V+LYRPGP++ 
Sbjct: 589  IDKIDKGDPAVYKMISRGDTTGVFQLESSGFREILTKLKPDQLEDIVAAVALYRPGPLEG 648

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  +  RK+G++++   HP ++P+L++T GVI+YQEQVMQIAQ+L+GYSL  AD+LRR
Sbjct: 649  GMVDDFIERKHGRKRVEYPHPDLEPVLRDTYGVIVYQEQVMQIAQVLAGYSLGRADLLRR 708

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK K+ M K+K+ F++GA++ G+   +A  +F+L+A FA YGFN+SH+AAY  ISYQ
Sbjct: 709  AMGKKNKDVMAKEKDGFVTGATERGVDSKLAEQVFDLMAFFAGYGFNRSHSAAYGWISYQ 768

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK--VGDN 833
            TA++K HYP EF+A  M+ + DN + I KF  +AR   + +  P VN    DF   VG++
Sbjct: 769  TAYLKHHYPHEFMAGLMSCDQDNTDNIVKFIAEARAMGLVVARPDVNESAADFTVVVGED 828

Query: 834  ---RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
               RI + L A+KGVG      I+E  + D+ F S+ +FC RVDS+K NRRV+E+LV +G
Sbjct: 829  DTKRIRFGLGAVKGVGQGAVEAIIECRNQDEKFISIYEFCRRVDSQKCNRRVIEALVKSG 888

Query: 890  ALDCF----GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA------HEKGTFSDKIT 939
            A D      G  R ++  +++   +     +++R +   ++F        + G  +D + 
Sbjct: 889  AFDGLSEDAGLHRARVFATIEAAMESGAQAQRDRRSGQTSLFGLIAAPEGDSGATADGMP 948

Query: 940  LEKFSVENSSVR----FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
                 VE    +    FE E   LGFY SGHPLD Y+  L +       + +   R    
Sbjct: 949  ETYPEVEEWPAKELLAFEKES--LGFYISGHPLDRYRADLTRYANATTTDFLEGKRPAGP 1006

Query: 996  RLAAMVVSK-QQKKTRKG-SRIGWVTFSEPAKEYEANFFP 1033
                 VVS  +++ TRKG  +I +    +   + E   FP
Sbjct: 1007 AAVGGVVSAYRERPTRKGDGKIAFFQLEDATGQLEVIVFP 1046


>gi|323525323|ref|YP_004227476.1| DNA polymerase III subunit alpha [Burkholderia sp. CCGE1001]
 gi|323382325|gb|ADX54416.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1001]
          Length = 1196

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1028 (39%), Positives = 618/1028 (60%), Gaps = 52/1028 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL++HS +S+ +G + L++++   A D Q A+A+TD  N F  + F ++A   G++
Sbjct: 7    PRFVHLRLHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+  L +Q +  
Sbjct: 67   PIAGC--------DVWITNPDDRDKPS--RLLLLVKDRRGYLNLCELLSKASLTNQYRGR 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   WL+    EGL+ L+G   G I  A    + + A +  L + K+F    Y+ LQR
Sbjct: 117  AEVEAGWLESGLGEGLLALSGAQQGDIGLALAAGNQEAARRNALHWAKVFPGGFYIELQR 176

Query: 189  --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
                G ++Y + Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++   R 
Sbjct: 177  CGQPGGEQYVQ-QAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRQ 235

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R TP+ Y + + EM ++F+D+P AL N+VEIA+RC+  L++  P LP F   +   +  
Sbjct: 236  KRFTPEQYFRTQDEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 293

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L + +  GLE RL Q       +    + Y QRL+FE   I +M F GYFLIVAD
Sbjct: 294  --DDYLVHLSKEGLEKRLEQLYPDEAERAAQRETYYQRLEFECGTIIKMGFPGYFLIVAD 351

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 352  FINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDF 411

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 412  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 471

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LLE++Q++EGL R+   HA G++I    L+ 
Sbjct: 472  PGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTD 531

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +    K D SL
Sbjct: 532  FCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKKDWSL 591

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPGP+D I
Sbjct: 592  GQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLI 651

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 652  PSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 711

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM + +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 712  KKKPEEMAQHRELFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 771

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP +N     F+     D + 
Sbjct: 772  LKAHHPAEFMAANMSLAMDDTDKVKILFEDCIVNKMAVLPPDINLSAYRFEPVAEADGKR 831

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  D PF  + DFC+R+D + +NRR +E+L+ AGA 
Sbjct: 832  SRTIRYGLGAIKGSGQNAIEEILRAREDGPFIDIFDFCNRIDRRVVNRRTIEALIRAGAF 891

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--SDKITLEKFSVEN-- 947
            D    +R QL+ S+    + A+    N         A + G F   D  +     V+   
Sbjct: 892  DSLHQNRAQLIASVSLAMEAAEQASAN---------ALQAGLFDMGDAPSQGHELVDEPE 942

Query: 948  --SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004
                 + + E+  LGFY SGH  D YK  +R+       + +  ++ G +  +A ++ S 
Sbjct: 943  WPEKKKLQEEKAALGFYLSGHLFDAYKDEVRRF----VRQKIGELKEGRDKLVAGIIASL 998

Query: 1005 QQKKTRKG 1012
            + + T++G
Sbjct: 999  RTQMTQRG 1006


>gi|302337842|ref|YP_003803048.1| DNA polymerase III subunit alpha [Spirochaeta smaragdinae DSM 11293]
 gi|301635027|gb|ADK80454.1| DNA polymerase III, alpha subunit [Spirochaeta smaragdinae DSM 11293]
          Length = 1141

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1038 (39%), Positives = 614/1038 (59%), Gaps = 38/1038 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL  H+ YSLL+GA  ++ +++K  +     +AITD  N+F  L F +   A  I 
Sbjct: 2    PDFVHLHNHTDYSLLDGAAPIDKMVEKAVSFGMKHLAITDHGNMFGVLRFYKACKAHEIN 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P+IGC++ +      +    G         +VLL   +EGY+ LI+L SR Y  +     
Sbjct: 62   PLIGCEVYV--APGSRHVKNGSEKGNRYQHLVLLARNSEGYKNLIQLCSRGYT-EGFYYK 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             RI    L++    GL  L+   +G I        ++ AE++   +++LFG +  ++ +Q
Sbjct: 119  PRIDDELLEQYNG-GLTALSACLAGAIPSMIMNGKAEEAEQKANYYRELFGKEHFFLEMQ 177

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H     +    ++V+++    +PLVATN+  +L   D  A D+L+ +  +    ++DR 
Sbjct: 178  DHGIPEQKTVNKELVRISKKTGIPLVATNDIHYLDRADASAQDILLCIGTNRKRREQDRM 237

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R   D  Y+K++ EM   F ++PEAL NT+ +A +C+  + +  PILP +      +I  
Sbjct: 238  RFHSDQFYMKSQEEMAETFREIPEALSNTLRVAEQCNLEIDLPGPILPEY------EIPP 291

Query: 306  EEEN---ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            E EN    LR+    GL+ R             +  QR + EL +I  M F GYFLIV D
Sbjct: 292  EFENLGDYLRHLTFEGLKKRYPS-------LTDEIVQRAEKELGIINSMHFPGYFLIVWD 344

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI +AK+++IPVGPGRGSGAGS+ AYALTITDIDPL++ LLFERFLNP+R+SMPDFD+DF
Sbjct: 345  FIHYAKQHDIPVGPGRGSGAGSIVAYALTITDIDPLKYQLLFERFLNPERVSMPDFDVDF 404

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  KYG ++V QIITFG+L+AKA ++DV R L +P+++ D++ KLIPND
Sbjct: 405  CFERRQEVIDYVNRKYGKDKVGQIITFGTLKAKAVVKDVARVLDIPFAEADKISKLIPND 464

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+  + + +E          L++ +++LEGL RHASTHAAG+VIG + L++ 
Sbjct: 465  LKITID-KALEQEPQLKELMDQGGVYGELIDAARRLEGLSRHASTHAAGVVIGRKALTEY 523

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD ++    TQF M  +E+ GL+K DFLGLKTLTL++ + D + +R    D+  +P
Sbjct: 524  VPLYRDSKTGSISTQFTMDQLEECGLVKMDFLGLKTLTLIKHTEDLIHRRDKDFDIERVP 583

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  T+ LL    +  +FQ ESSGM+  L+   P  IED+IAL +LYRPGP+  I  Y 
Sbjct: 584  EDDPATFTLLGEGKSTCVFQFESSGMQNILKQAHPTSIEDLIALNALYRPGPMQYIPQYI 643

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K+G+++I    P ++ +LK T GVI+YQEQVMQ+AQ++ G+SL +AD+LRRAMGKK  
Sbjct: 644  ASKSGEQEIRYPDPSLEEVLKPTYGVIVYQEQVMQVAQIIGGFSLGKADILRRAMGKKKV 703

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            +EM K K  FI GA K G +K  A  IFE+L  FA YGFNKSHAAAY+V++Y+TA++K +
Sbjct: 704  KEMAKMKLEFIEGAVKKGHTKEHADEIFEMLVPFAGYGFNKSHAAAYSVVAYKTAYLKAN 763

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP EF+AA++T E++N +K+  +  +A+   I ++PP VN    +F V D +I Y L  I
Sbjct: 764  YPAEFMAANLTNEINNPDKLAFYIGEAKTMGIDLLPPEVNISEKNFSVSDGKIVYGLIGI 823

Query: 843  KGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K VGT     I+ A  +  PF+ + D   RVD K +NR+VLE+L+  GALD FG +R  L
Sbjct: 824  KNVGTNAVEEIVRAREEGGPFEDIFDLLDRVDMKTVNRKVLETLIECGALDSFGINRSTL 883

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIF---AHEKGTFSDKIT----LEKFSVENSSVRFEN 954
            L++L+ + +     ++       ++F     E+  +   +T    L K  V         
Sbjct: 884  LENLERVMEVVSKKKEGEQFGQSSLFDDGNEEEMPWKTDLTPAEPLPKMEV------LRR 937

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+ +LGFYFSGHP+D +K   +             I      L AMV S +   T+KG  
Sbjct: 938  ERELLGFYFSGHPMDDFKDRWKSAVNIDLSRPDRFIPERTYTLIAMVTSLRTIITKKGRP 997

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + ++   +   + E+  F
Sbjct: 998  MAFLQLEDYNGKIESVVF 1015


>gi|226310964|ref|YP_002770858.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
 gi|226093912|dbj|BAH42354.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
          Length = 1142

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/1037 (37%), Positives = 620/1037 (59%), Gaps = 40/1037 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+GA  ++ ++ + +     A+A+TD  NL+ A+ F +    AGI+P
Sbjct: 3    SFVHLHVHTEYSLLDGAARIDTLVKRASELGMHALAMTDHANLYGAIPFYKACLEAGIRP 62

Query: 70   IIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-----YL 121
            IIG +L +   ++QD ++       P P+   +++L     GY+ L+ L +       Y+
Sbjct: 63   IIGMELYVIEGNLQDRVR-----NAPPPS--HLIVLAENETGYRNLLRLATIANTDGNYI 115

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
            L +  + V           T+GLI L+G   G + +      +  A++  L ++++FG++
Sbjct: 116  LPRLNKEVLAK-------HTDGLIALSGCQQGEVAKLLLAGEADTAKEAALRYQRMFGEQ 168

Query: 182  -LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ L  H    +R   +++V+L+    +PL+ATNN  ++  ED++ HD+L+A+     
Sbjct: 169  HFYLELADHGLEVERRLNTRLVKLSQETGIPLIATNNVHYIHREDHQQHDILLAIKEGKT 228

Query: 240  VSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            + +++R R   D +YLK+  EM ++F+  P+AL NTV +A RC   L   A ILP F   
Sbjct: 229  IGEENRFRYETDQYYLKSAEEMAALFAFAPQALANTVAVADRCKLDLTFGAHILPEFPLA 288

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E  D        LR     G   R        G    + + RLD EL +I    F+ YFL
Sbjct: 289  EGQD----STQYLRELCEKGCLERY-------GEITPEAQARLDHELAIITGTGFTDYFL 337

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DF+++A +N IP GPGRGS AGS+ AY L IT++DPLRF LLFERFLNP+R++MPD 
Sbjct: 338  IVWDFMRYAHENGIPTGPGRGSAAGSLVAYVLKITNVDPLRFQLLFERFLNPERVTMPDI 397

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDF  +RRDEVI YV +KYGH+RVAQIITFG++ A+AA+RDVGRAL +    VDR+ K+
Sbjct: 398  DIDFSVERRDEVIHYVASKYGHDRVAQIITFGTMAARAAVRDVGRALGLSLGIVDRVAKM 457

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP  P   +  +A+  +    +    +    +L+E ++ +EGL RHASTHAAG+VI   P
Sbjct: 458  IPQSPGMTIE-RAMQINPDIGKLCAENKQAAQLIETARGVEGLPRHASTHAAGVVISREP 516

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            L+  VP+ +     L +TQ+ M+ +E+ GL+K DFLGL+ LT++Q++L  L ++G+ +DL
Sbjct: 517  LTNYVPL-QTGNEGLALTQYPMEILEEVGLLKMDFLGLRNLTIIQETLRHLQEQGISLDL 575

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD +T+ +L+   T GIFQLESSGMR  L  ++P  ++DIIA+++LYRPGP++ I
Sbjct: 576  DKLPTDDEKTFRMLSRGETTGIFQLESSGMRNVLRDLKPSSLDDIIAVLALYRPGPMEII 635

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y   K+G  K+   HP+++P+L+ET G +IYQEQ+MQI+  L+G+SL EAD+LRRA+G
Sbjct: 636  PQYIAAKHGTSKVQYAHPVLEPILRETHGFMIYQEQIMQISSTLAGFSLGEADILRRAVG 695

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK +E + +Q+E+F++G  + G    +   +++L+ +FADYGFNK+H+ AYA+I+YQ A+
Sbjct: 696  KKKRELLAEQREKFVAGCVRQGYGDELGNQVYDLIVRFADYGFNKAHSVAYAIIAYQMAY 755

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K  YP+ F+AA ++L + +  +I ++ ++AR+  + ++ P VN     F V  + I + 
Sbjct: 756  LKATYPLAFMAALLSLSIGSQTRIAEYTEEARRLQLTVLGPDVNKSLAFFTVEQDAIRFG 815

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            LAA+K VG      I++    +P+  + DFC+RVD++ +NRRV+ESL   GALD     R
Sbjct: 816  LAAVKNVGYGAIESIVKERKGRPYRDVFDFCARVDARLVNRRVVESLTLCGALDSLPGHR 875

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE--NSSVRFENEQ 956
             QLL  LD     A      R     N+FA E+     +   E   V   + + + + E+
Sbjct: 876  NQLLLLLDEAVGKANNKRIERDANQLNLFAGEEDAAPLREPAEYPEVPPLSHTQQLKEER 935

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             ++G Y SGHPLD +  +  +  +          R   +++  M+   ++ +T+KG  + 
Sbjct: 936  DLIGVYISGHPLDQFAHVASRPEVTVISSLGDVPRDKTVKVFGMITEARRIQTKKGDPMA 995

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++T  +     E   FP
Sbjct: 996  FITLEDKTAPVELVVFP 1012


>gi|71906199|ref|YP_283786.1| DNA polymerase III, alpha subunit [Dechloromonas aromatica RCB]
 gi|71845820|gb|AAZ45316.1| DNA polymerase III, alpha subunit [Dechloromonas aromatica RCB]
          Length = 1156

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1043 (39%), Positives = 615/1043 (58%), Gaps = 71/1043 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SP +VHL++HS YS+ +G + + + + + A D  PA+A+TD  NLF  ++F   A   G+
Sbjct: 3    SPRYVHLRLHSEYSVTDGIVRVGDAVKRAAGDSMPAMAMTDLGNLFGLVKFYTGARGKGV 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS----IVLLVSTAEGYQRLIELVSRMYLLD 123
            +PI G         ++ +TN      P  P     ++LLV    GYQ+L EL+++ YL++
Sbjct: 63   KPIAGA--------DVWITN------PDAPEDAYRLLLLVRNRVGYQQLCELLTKAYLVE 108

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
              +    I   W  E+G++GLI L+G   G I  A    +  +A +R   ++ +F    Y
Sbjct: 109  GRRDRAEIRREWFAELGSDGLIALSGAHLGDIGEALLNGNFDLAGERAKAWEAIFPGAFY 168

Query: 184  VNLQRHRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            + +QR   Y + ++  +VQ    LA    LPLVAT+   F++ +D+ AH+  + +A   V
Sbjct: 169  LEVQR---YGQPQQEAIVQQTADLAGELGLPLVATHPIQFMNRDDFRAHEARVCIAEGYV 225

Query: 240  VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IE 297
            +    RP++ T + Y K ++EMV +F+DLPEALENT+EIA+RC+  + +    LP F I 
Sbjct: 226  LGDTRRPKLYTEEQYFKTQAEMVELFADLPEALENTLEIAKRCNLTMTLGKNFLPDFPIP 285

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                D +      L  +A  GLEVRLA+       +     +Y +RL FE   I +M F 
Sbjct: 286  PGMTDGEY-----LVQEAKKGLEVRLAELYPDPEVRQQRRPEYDERLVFECKTILQMGFP 340

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIVADFI W KKN +PVGPGRGSGAGS+ AY+L ITDIDPL ++LLFERFLNP+R+S
Sbjct: 341  GYFLIVADFINWGKKNGVPVGPGRGSGAGSLVAYSLRITDIDPLEYALLFERFLNPERVS 400

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFDIDFCQD R  VI YV+  YG + V+QI TFG++ +KA +RDVGR   +PYS  DR
Sbjct: 401  MPDFDIDFCQDNRWRVIEYVREHYGADAVSQIATFGTMSSKAVIRDVGRVFGLPYSMCDR 460

Query: 475  LCKLIPNDPAHPVSL-QAIADDSRFREARLAD---PSVDRLLEISQKLEGLYRHASTHAA 530
            + KLIP     PVSL +A+  + + ++    D    ++  L +++ +LE L R+   HA 
Sbjct: 461  ISKLIPIVQNKPVSLAEALEQEPQLKQMMEGDGDGETIRELFDLAGRLEDLTRNVGMHAG 520

Query: 531  GIVIGDRPLSQLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G++I    ++   P+Y+   +D  PV+QF+   +EKAGL+KFDFLGL+ LT+++ +++++
Sbjct: 521  GVLIAPGKITDFCPIYQATGADASPVSQFDKDDVEKAGLVKFDFLGLRNLTIIELAVEYI 580

Query: 590  AQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             +  G K+DL  + F D   Y +L    T  IFQ+ES GM++ L+ + PD  EDIIA+++
Sbjct: 581  RRMTGEKLDLMSLGFKDPAAYQILKDANTTAIFQVESEGMKKLLKKLAPDRFEDIIAVLA 640

Query: 649  LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            LYRPGP+ + +V  +  RK G++KI   HP +   L  T GVI+YQEQVMQI+Q++ GY+
Sbjct: 641  LYRPGPLGSGMVDDFILRKKGQQKIDYFHPDLTACLSPTYGVIVYQEQVMQISQIIGGYT 700

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM K +E    GA + G    +A  +F+L+ KFA+YGFNKSH 
Sbjct: 701  LGGADMLRRAMGKKKPEEMAKHRETIAQGAKEKGYDPALAEQLFDLMTKFAEYGFNKSHT 760

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYAV++Y TAW+K H+   F+AA+M+ ++DN + +K F +D     I+++ P VN    
Sbjct: 761  AAYAVVTYHTAWLKAHHCAAFMAATMSSDLDNTDSVKIFYEDTIANKIKVLGPDVNVSNY 820

Query: 827  DFK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLES 884
             F+ V    I Y L A+KG G      I++A A+  PF  L DFC R D + +NRR  E+
Sbjct: 821  RFEPVDRGTIRYGLGAVKGTGEQAVNVILKARAEGGPFKDLFDFCMRCDKRMVNRRTTEA 880

Query: 885  LVFAGALDCF--------GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            L+ AGA D          G  R +LL ++     +A+  E+N      ++F  +    +D
Sbjct: 881  LIKAGAFDTIAPEIAPGKGADRCKLLATVGVAMDFAEQAERNAM--QTSLF--DMADVAD 936

Query: 937  KITLEKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKP-----ILRKMGIKGYEESVAT 989
            +   E  +V   +   +   E+  LGF+FSGHP +  K      I R +      + + T
Sbjct: 937  EHAPEYVNVRPWDEKTKLMEEKTALGFFFSGHPYNTCKKELSRFIRRPLNRLEPAKEMTT 996

Query: 990  IRGNNIRLAAMVVSKQQKKTRKG 1012
            I       A +VV  + + TR+G
Sbjct: 997  I-------AGLVVGVRTQMTRRG 1012


>gi|295698553|ref|YP_003603208.1| DNA polymerase III alpha subunit [Candidatus Riesia pediculicola
            USDA]
 gi|291157151|gb|ADD79596.1| DNA polymerase III alpha subunit [Candidatus Riesia pediculicola
            USDA]
          Length = 1177

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1062 (39%), Positives = 630/1062 (59%), Gaps = 50/1062 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F+HL V S YS+ +G   ++ ++D+    + P+IAITD  NL   ++F + + +
Sbjct: 1    MNKEPKFIHLHVRSDYSMSDGLSRIDILIDRALELKMPSIAITDFVNLHGMIKFYELSRS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG   D+ +QD        K  F T   + +L+   +GYQ L++L+S  Y    
Sbjct: 61   VGIKPIIGS--DVIVQD------LSKNGFETYYELTILIKDHKGYQNLVQLISLAYRDGN 112

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL  +  EGLI+L+GG SG I +    N+    +K L  +   F +  Y+
Sbjct: 113  STMGPIIKKDWLI-LYREGLILLSGGISGDIGKNILENNLSDLKKNLNFYGTYFHNHYYM 171

Query: 185  NLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ- 242
             + R    +  +   +V+QL+   ++P+VATNN  F+ + D+ AH + +A+ +  V+S+ 
Sbjct: 172  EITRTGKIEEEKYIHKVIQLSKKKKIPIVATNNVRFVFKNDFFAHKIRVAIQNGFVLSKS 231

Query: 243  -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             KD  R +   YL++  EM  +F D+PE+L+NTVEIA+RC+        +LP F  K   
Sbjct: 232  RKDDLRYSDQQYLRSSKEMNDLFRDIPESLKNTVEIAKRCNLQFSFSNFLLPVFPIKNV- 290

Query: 302  DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+     A +GLE RL +       +      Y QRL  E+N+I +M FSGYFL
Sbjct: 291  ----RIEDFFVFSARSGLEERLKKIYPDPSIRKRKRDKYDQRLSEEINIIHQMGFSGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +F+ W+K+ NIPVGPGRGSGAGS+ AY+L IT++DP++F+L+FERFLN +R+SMPDF
Sbjct: 347  IVMEFVNWSKRKNIPVGPGRGSGAGSLVAYSLKITELDPIKFNLVFERFLNKERISMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC ++RD VI +V  KYG + V+QII FG++ A++ ++DVGRA+  PYS  +R+ KL
Sbjct: 407  DIDFCVEKRDLVIEHVIKKYGKDFVSQIIAFGTMTARSVVKDVGRAMCYPYSFTNRISKL 466

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   +   A++ + + ++    +  V  LL+ ++KLEG+ R+ S HA GIVI  + 
Sbjct: 467  IPFDPGMTIE-HALSSEKKLKKLYENEEEVKILLDTAKKLEGIVRNVSKHAGGIVISPKK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------AQR 592
            + +  P+Y D      +T  +   IEK GL+KFDFLGLKTLT+++ +++ +       ++
Sbjct: 526  IIKYFPLYYDSIGKNSLTHLDKDDIEKIGLVKFDFLGLKTLTIIRDTIEIINFHSSDLKK 585

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                DL+ I  +D  ++ LL +  T+ IFQLES GM+  +  +QPDC EDII+L++L+RP
Sbjct: 586  ITLSDLNSISLNDPMSFDLLRSAETVAIFQLESRGMKDLIRRLQPDCFEDIISLIALFRP 645

Query: 653  GPIDNIVVYN--NRKNGKEKIV-----SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + ++ N  NRKNG EKI        H L+ P+LK T G+I+YQEQVMQIAQ+L+GY
Sbjct: 646  GPLKSGMISNFINRKNGLEKISYPEEECQHDLLKPILKNTYGIILYQEQVMQIAQILAGY 705

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL EAD+LRRAM KK K+EM  Q++ F     K GI + +A  +F+L+ KF+ YGFNKSH
Sbjct: 706  SLGEADILRRAMSKKNKKEMKDQRKNFERRCLKRGIDREMASRMFDLMEKFSGYGFNKSH 765

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA+ISYQT W+K+HYP EF+AASMT EM+N++KI +   + R+  I+I+PP+VN   
Sbjct: 766  SAAYALISYQTLWLKSHYPSEFIAASMTSEMNNLDKIFELVNECRRLKIKILPPNVNQGM 825

Query: 826  VDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADK--PFDSLEDFCSRVDSKKLNRRVL 882
              F+V  N  I Y + AIKG+G +     M +S +K   F  + DFC R++ K +NR+ L
Sbjct: 826  YFFQVNRNGEIIYGMGAIKGIGKSVIEK-MISSRNKYGKFLDIFDFCRRINVKTVNRKTL 884

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E L+ +G+ DCFG  R ++L  L +  K     +K +++   ++F  +         ++ 
Sbjct: 885  EKLILSGSFDCFGQKRFEMLHILKDALKLTAQEKKVQSSGQIDMFETDIRKNRSIREIDD 944

Query: 943  FSVEN-SSVRFENEQRVLGFYFSGHPLDVYKPIL----RKMGIKGY------EESVATIR 991
             S +    + F  E+  LGFY + HP   Y+  +    R   I+        +ES  T+ 
Sbjct: 945  LSRKRLKRMVFYGERDTLGFYLTNHPTSFYRSEISYYTRGKNIRDILSHSFSQESSLTVV 1004

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            G +I    +V  K     R    IG  T S+ +   E   FP
Sbjct: 1005 G-SISSCRLVKCKTSNFFRNSKTIGICTLSDFSGNLEIVLFP 1045


>gi|88812392|ref|ZP_01127642.1| DNA polymerase III, alpha subunit [Nitrococcus mobilis Nb-231]
 gi|88790399|gb|EAR21516.1| DNA polymerase III, alpha subunit [Nitrococcus mobilis Nb-231]
          Length = 1174

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1067 (38%), Positives = 613/1067 (57%), Gaps = 62/1067 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  F HL +HS +SL +G + +  ++  +A    PA+A+TD  NLF A++F + A  AG+
Sbjct: 2    SAFFAHLHLHSEFSLQDGLIRVKPLMQAVAQAGMPAVALTDQGNLFGAVKFYRAAVNAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG ++ +   D  +   +          +VLL +  +GY+ L  L++R YL  Q + 
Sbjct: 62   KPIIGAEIRVADADASERPAR----------LVLLCADTQGYRTLTRLLTRGYLEGQQQG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+GG  G + RA       +A ++L  +++ FGDR Y+ LQ
Sbjct: 112  VPVVDREWLRGR-CAGLIGLSGGRVGDVGRALLSGEPALAARKLEFWREQFGDRYYLELQ 170

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R  D       V+LA  H + +VATN+  FL  EDY AH+V + +     ++ K RP
Sbjct: 171  RTGRPGDEEHVQAAVELATAHGVAVVATNDVCFLRPEDYAAHEVRVCIQDGRTLADKHRP 230

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  +   YL++  EM  +F+D+PEALENT EIARRC+  L +    LP F   E   I  
Sbjct: 231  RHYSEQQYLRSPKEMAELFADVPEALENTAEIARRCNLHLTLSHSALPVFPIPEGASI-- 288

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHA----QDYRQRLDFELNVIARMKFSGYFLIVA 361
              ++ LR +A  GL+ RL    +          + Y +RL+ EL VI +M F  YFLIVA
Sbjct: 289  --DDVLRQEAERGLQERLQCSLVTDHPDGVELRRSYSERLERELEVINQMGFPSYFLIVA 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK+  IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID
Sbjct: 347  DFIRWAKRQGIPVGPGRGSGAGSLVAYALQITDLDPLSYDLLFERFLNPERVSMPDFDID 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RD VI YV  +YG ++V+QI+T G++ A+A +RDVGR L  PY  VDR+ K+IP 
Sbjct: 407  FCMENRDRVIDYVGGRYGRDKVSQIVTHGTMAARAVVRDVGRVLGHPYGYVDRIAKMIPF 466

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +    ++L+ A+A +         D  V  LL +++KLEGL R+   HA G+VI    L+
Sbjct: 467  EIG--ITLEKALAQEEELHRLYREDEEVRTLLGMARKLEGLARNVGRHAGGVVIAPSELT 524

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGV----K 595
               P+Y +       TQ++   IE  GL+KFDFLGL+TLT++  ++  +  QR       
Sbjct: 525  DFAPLYCEPGGQGLATQYDKDDIEAVGLVKFDFLGLRTLTIIDWTVKAVNTQRSACDEPA 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D++ +  DD +T+ LL    T  +FQLES GM+  +  +QPD  EDIIALV+L+RPGP+
Sbjct: 585  LDIAALALDDAKTFELLKRCATTAVFQLESRGMKDLMRRLQPDTFEDIIALVALFRPGPL 644

Query: 656  DNIVV--YNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V  +  RK+G+  +        H  ++P+LK T G+I+YQEQVMQIAQ L+GYSL 
Sbjct: 645  QSGMVDDFIARKHGRAAVAYPTRALHHEALEPILKSTYGIILYQEQVMQIAQTLAGYSLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  +EM +Q+  F+ GA + G+++  A  +F+L+ KFA YGFNKSH+AA
Sbjct: 705  AADLLRRAMGKKKPQEMAQQRHIFLQGAIECGLARQQAEGLFDLMEKFAGYGFNKSHSAA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+++YQTAW+K HYP  F+AA ++ +MDN +K+     + R   I + PP VN     F
Sbjct: 765  YALLAYQTAWLKAHYPAPFMAAVLSSDMDNTDKVVALIDECRCLQIILDPPDVNRSGYAF 824

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            +  +   I Y L A+KG+G +    ++EA  A  P+  L D C RVD +++N+RV+E+L+
Sbjct: 825  QAREMTHIVYGLGAVKGLGLSAIEALVEAREAGGPYADLFDLCRRVDLRRVNKRVIETLI 884

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             +G+LD    +R    Q L +  + A+   +NR     ++F    G  +  +     +V 
Sbjct: 885  RSGSLDGLAVNRATAWQQLPDALRSAEQQCRNRDTGQVDLF----GLGATPLEQAPLTVS 940

Query: 947  NSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
            +  V       R   E+  LG Y +GHP++ Y+  L  +      +  A   G   R   
Sbjct: 941  DPGVPEWDEQERLAAEKATLGLYLTGHPIEHYEAELDGIVSARLNQVSAGACGEPARGVG 1000

Query: 1000 MVVSKQQKK-------------TRKGSRIGWVTFSEPAKEYEANFFP 1033
                 ++K              T+ G R+G++T  +     +   FP
Sbjct: 1001 RKREGERKVVVAGLVVALRARPTQNGGRMGFITLDDRTGRMDVIVFP 1047


>gi|260222868|emb|CBA32866.1| DNA polymerase III subunit alpha [Curvibacter putative symbiont of
            Hydra magnipapillata]
          Length = 1244

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/1012 (39%), Positives = 589/1012 (58%), Gaps = 51/1012 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   +++++   A D QPA+AITD NNLF A++F +     G++P+
Sbjct: 57   FVHLRLHTEFSVVDGTTRIDDVIKMAAKDGQPALAITDLNNLFGAIKFYKGGRGKGVKPV 116

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ ++                 V  I+LLV   +GY  + EL++R +  +  K    
Sbjct: 117  IGAEIVLEGLGGDATA---------VTRIILLVQNKQGYLNISELIARAFTQNVVKNQAV 167

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            I ++WL+E+  EGLI L+G  +GP+ +A     +  A    L    +F  R Y+ LQR  
Sbjct: 168  IKMAWLKEL-NEGLIALSGAQAGPVGQALVQGDTARAHDVALQLAGVFPHRFYIELQRAG 226

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D       V+LA   +LP+VAT+   F  ++D+EAH+  + +A   ++S   R  R 
Sbjct: 227  RADDEAHVVAAVKLAARMKLPVVATHPIQFAEQDDFEAHEARICIADGEILSNPKRVRRF 286

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K+ ++M ++F+D+P A+ NT+EIA+RCS  L +  P LP F     +  +   E
Sbjct: 287  TREQYFKSAAQMEALFADIPSAIANTMEIAKRCSLTLVLGKPQLPAFPTPLVNGQRMTPE 346

Query: 309  NELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R  +  GL+ R+         +      Y +RL+FEL  I +M F GYFLIV DFI 
Sbjct: 347  EYFRYASFEGLKERMVHLYPNEQEREAEMPRYVERLEFELGTILKMGFPGYFLIVGDFIN 406

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 407  WAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQT 466

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             R+ VI YV++KYG + V+QI TFG++ A+  +RDVGR L M Y+  D + KLIPN P  
Sbjct: 467  NRNLVIDYVKDKYGKDAVSQIATFGTMAARGVVRDVGRVLDMSYTFCDGISKLIPNKPGT 526

Query: 486  PVSLQAIADDSRF----------------REARLADPSVDRLLEISQKLEGLYRHASTHA 529
             V+LQ    D +                 REA+  D  V  LLE+++KLEG+ R+   HA
Sbjct: 527  NVTLQLPPTDGKKSDKYVYATEAEPILAEREAKEED--VKTLLEMARKLEGMTRNIGMHA 584

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F+
Sbjct: 585  GGVLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAAEFI 644

Query: 590  AQRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             +R     K     +P DD + Y L +   T  +FQ ES GM+  L   +P  +ED+IAL
Sbjct: 645  RKRHPGQEKFAYENLPLDDPKVYKLFSEGKTEAVFQFESRGMQGMLRDAKPSRLEDLIAL 704

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
             +LYRPGP+D I  +  RK+G+E++   HP +  ML ET G+++YQEQVMQ AQ+L GYS
Sbjct: 705  NALYRPGPMDLIPSFVARKHGREQVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGYS 764

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSH 765
            L  AD+LRRAMGKK KEEMD+ +  F +GA K +GI +  A  +F+L+ KFA YGFNKSH
Sbjct: 765  LGGADLLRRAMGKKKKEEMDEHRGIFRAGAFKTHGIPEEKADEVFDLMEKFAGYGFNKSH 824

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AAAY++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA +  +   PP++N   
Sbjct: 825  AAAYSLLAYHTGWIKVHYTAEFFCANMTVEMDDTDKLKVLFEDAEKMGLSFEPPNINRGN 884

Query: 826  VDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK-------PFDSLEDFCSRVDSKKL 877
              F+ + +  I Y L AIKG G      I+ A   +       PF SL DF  RVD  +L
Sbjct: 885  YRFEPISNKEIRYGLGAIKGTGEQAILAIVAAREGRGPTEEAGPFKSLFDFARRVDRTRL 944

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGT 933
            N+R +E+L+ AGA D    +R +L+ S+D  + +              +F      + G+
Sbjct: 945  NKRCVEALIKAGAFDTLHLNRAELVASMD--RAFEFAAASAANANQVGLFDMGGDDDHGS 1002

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
             + +  L +        R   E+  +GFY SGH  D     +RK   +  EE
Sbjct: 1003 STQEPDLVEVMPWGVKERLTQEKTAVGFYLSGHLFDEVATEVRKFAKRPIEE 1054


>gi|146281926|ref|YP_001172079.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri A1501]
 gi|145570131|gb|ABP79237.1| DNA polymerase III, alpha chain [Pseudomonas stutzeri A1501]
          Length = 1131

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1024 (40%), Positives = 602/1024 (58%), Gaps = 63/1024 (6%)

Query: 50   NNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
            +N+ S ++F + A  AGI+PI  C  DI +         G      +  + LL    +GY
Sbjct: 2    SNMCSLVKFYKTAQGAGIKPI--CGADIWLA--------GCDEDGPLSRLTLLAMNPKGY 51

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            + L EL+SR +   Q    V I   W++E   EGLI L+G   G I  A       +A  
Sbjct: 52   RNLTELISRGWTEGQRNDLVIIEREWVKE-AAEGLIALSGAKEGEIGHALLNGDEALAAS 110

Query: 170  RLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
            RL  ++++F DR Y+ +QR +R  D       V LA     PLVATN+  FL +ED+EAH
Sbjct: 111  RLAEWREVFADRFYLEVQRTNRVNDEEHLHAAVALAERSGAPLVATNDVRFLKQEDFEAH 170

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            +  + +     +    RPR   D  YLK   EM  +F+DLPEALENTVEIA+RC+  +Q+
Sbjct: 171  ETRVCIGEGRTLDDPRRPRTYSDQQYLKTPEEMAELFADLPEALENTVEIAKRCNIEVQL 230

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG---YHA--QDYRQRLD 342
                LP F   E   I    ++ LR  +  GLE RL +  + K    Y A  Q Y  RL+
Sbjct: 231  GTYFLPNFPVPEGMTI----DDYLRQVSFEGLEERL-EVLLPKDTPDYEAKKQVYIDRLE 285

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            FEL  I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + L
Sbjct: 286  FELGTIIQMGFPGYFLIVMDFIKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDL 345

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPDFD+DFC D RD VI YV   YG   V+QIITFG++ AKA +RDV 
Sbjct: 346  LFERFLNPERISMPDFDVDFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVA 405

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            R     Y   DRL K+IP +    +  +A   +   R+    D     + E++ KLEG+ 
Sbjct: 406  RVQGKSYGLADRLSKMIPFEVGMTLE-KAYEMEEPLRDFLAVDEDAREIWEMALKLEGIT 464

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HA G+VI    L+   P+  D      VTQF+   +E+AGL+KFDFLGL+TLT++
Sbjct: 465  RGTGKHAGGVVIAPTKLTDFAPIACDEEGGGLVTQFDKDDVEQAGLVKFDFLGLRTLTII 524

Query: 583  QKSLDFL----AQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            + +L+ +    A++G++ V++  IP DD  TY LL    T  +FQLES GM++ ++ ++P
Sbjct: 525  KWALETINREQAKKGLEPVNIDFIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKP 584

Query: 638  DCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVII 690
            DC+ED+IALV+L+RPGP+ + +V  + NRK+G+ ++   HP      ++P+LK T G+I+
Sbjct: 585  DCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQYAGLEPVLKPTYGIIL 644

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVMQIAQ+++GY+L  AD+LRRAMGKK  EEM KQ+  FI G + NGI   +A NIF
Sbjct: 645  YQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAKQRGGFIEGCANNGIDADLAGNIF 704

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            +L+ KFA YGFNKSH+AAY ++SYQTAW+K H+P  F+AA ++ +M N +K+    ++ R
Sbjct: 705  DLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHHPSPFMAAVLSADMHNTDKVVILIEECR 764

Query: 811  QFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDF 868
               ++I PP VN     F V D+ RI Y L A+KGVG      I E  A+  PF  L DF
Sbjct: 765  SMKLRIDPPDVNVSEFKFTVNDDGRIVYGLGAVKGVGEGPVDAIAECRAEGGPFKDLFDF 824

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFG---------------YSRMQLLQSLDNIQKYAQ 913
            C+R+D K++N+R LE+L+ +GALD  G                +R  LL +++   + A+
Sbjct: 825  CARIDLKRINKRTLEALIRSGALDRLGPYFFEEAKAYQANIDRNRAVLLAAMEEAVQAAE 884

Query: 914  WVEKNRTNKHENIFAH-----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
               ++  + H ++F       E   + +     + S++    R + E+  LG Y +GHP+
Sbjct: 885  QTARSAESGHMDLFGGLFAEPEADVYGNHRNARELSLKE---RLKGEKDTLGLYLTGHPI 941

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            D Y+  +R+   +   + +   RG    +A ++V+ +  K +KG ++G++T  + +   E
Sbjct: 942  DEYEGEIRRFARQRIID-LRPARGEQT-IAGLIVNLRVMKNKKGDKMGFITLDDRSGRIE 999

Query: 1029 ANFF 1032
            A+ F
Sbjct: 1000 ASLF 1003


>gi|303328214|ref|ZP_07358652.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. 3_1_syn3]
 gi|302861544|gb|EFL84480.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. 3_1_syn3]
          Length = 1159

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1040 (39%), Positives = 610/1040 (58%), Gaps = 32/1040 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YSLL+GA+ + ++  +      PA AITD  N+F A  F       GI+PI
Sbjct: 4    FVHLHCHTEYSLLDGAIRIKDLCARAKDYGMPACAITDHGNMFGAAYFYAACKDFGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             GC++ +      K +   +        ++LL     GY  L++LVS  +L D      R
Sbjct: 64   FGCEVYVCHDHTDKTSELARRRH----HLILLAQNELGYHNLVKLVSHGFL-DGFYYKPR 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    L+    EGL  L+   +G I RA        A      +  ++  R Y+ LQ + 
Sbjct: 119  VDKELLRRYA-EGLTCLSACIAGEIPRAILAKDMDKALSLTREYADIYPGRFYLELQSNG 177

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
                    + ++++A T +LPLVATN+  +L+ +D +AH+VL+ +   T +    R R  
Sbjct: 178  LAEQEVVNNALLEIAETADLPLVATNDCHYLNADDADAHEVLLCIQTQTTMDDPKRMRFE 237

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K+  EM   F+ +PEAL NT+ IA  C+  L       P +   E   +    E
Sbjct: 238  THELYYKSIEEMEKPFAHVPEALANTMRIAETCNVELDFGHHYFPVYQLPEGASM----E 293

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            +E R  A  GLE RL +    +      YR+RL +EL VI  M F GYFLIV +FI WAK
Sbjct: 294  SEFRRLAEEGLERRLEKHPDRENIDPARYRERLQYELGVILEMGFPGYFLIVQEFINWAK 353

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             + IPVGPGRGS AGS+ A++L IT++DPL ++LLFERFLN +R+S+PD D+DFC+ RR 
Sbjct: 354  NHGIPVGPGRGSAAGSLVAWSLRITNLDPLPYNLLFERFLNNERVSLPDIDVDFCERRRG 413

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +VIR++ + YG   VAQI TFG+++AK  +RDVGRAL M +++ DR+ KL+P+D    + 
Sbjct: 414  DVIRHMVDTYGEGSVAQITTFGTMKAKGVVRDVGRALGMTFAETDRIAKLVPDDLKMTIK 473

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+  +   R+    D  V  LL+ +++LEGL RHASTHAAG+V+ D+P+ + +P+Y  
Sbjct: 474  -KALDLEPDLRKLYEEDQQVRHLLDTARRLEGLARHASTHAAGLVVSDKPMEEYLPLYLG 532

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
             R +L VTQF+    EKAGL+KFDFLGLKT+TL+Q +LD ++ +G    DL  +P  D E
Sbjct: 533  KRGEL-VTQFDGPMTEKAGLVKFDFLGLKTMTLIQDTLDNISLQGQTPPDLDNLPLTDAE 591

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRK 665
            TY L     T G+FQ+ESSGMRQ L  ++P C ED+IA+++LYRPGP+ + +V  +  RK
Sbjct: 592  TYELYARGDTDGVFQVESSGMRQYLRMLRPTCFEDVIAMLALYRPGPLGSGMVDEFIKRK 651

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+  +V  H  +   L++T GVI+YQEQVMQIAQ+++ Y+L  AD+LRRAMGKK  E M
Sbjct: 652  HGQVPVVYPHDSLTECLRDTYGVIVYQEQVMQIAQIIASYTLGGADLLRRAMGKKKAEAM 711

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             K++  F++GA KNGI+K  A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K HY V
Sbjct: 712  AKERVTFVAGAEKNGIAKEKANEIFDLMEKFAEYGFNKSHSAAYALISYFTAYLKVHYKV 771

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+AA +T EM N +K+ K+    +   I ++ PSVN    +F     ++ + L  IK V
Sbjct: 772  EFMAALLTSEMGNQDKLLKYVSCCKDMGIDVVQPSVNQSQREFTAHGGQVVFGLGGIKNV 831

Query: 846  GTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            G    R I+E   +   + SL D C RV+ +K+ +RVLESL+  GA DCF  SR  +L +
Sbjct: 832  GDEAIREIVEGRKEGGDYISLLDLCCRVNLRKVTKRVLESLIKGGACDCFNVSRAGMLAA 891

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEK----------GTFSDKITLEKFSVENSSVRFEN 954
            L+ +   AQ   K++++   ++ A             G    + TL +       ++   
Sbjct: 892  LEIVVARAQKKAKDKSSNQVSLLAMAPVVEAAPQPGVGLDCPEATLPEM---EDDLKLRA 948

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGS 1013
            E+  LGF+ + HPL  Y   +R++ +   E++     G  I  A +V S ++  T+ KG 
Sbjct: 949  EKEALGFFLTSHPLQPYSREIRRLRLTTLEDARELFPGAEINCAVLVTSIKEVLTKSKGE 1008

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
            R+ +V   +     E  FFP
Sbjct: 1009 RMAFVGVEDLTGHAEVTFFP 1028


>gi|317407652|gb|EFV87591.1| DNA polymerase III [Achromobacter xylosoxidans C54]
          Length = 1163

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/1004 (40%), Positives = 605/1004 (60%), Gaps = 61/1004 (6%)

Query: 8   SPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           +PS FVHL+VHS +S+++G + + +++ ++A   QPA+A+TD +NLF  ++F + A  AG
Sbjct: 7   TPSPFVHLRVHSEFSVVDGIVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYKGARGAG 66

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           I+PI GC + +   D+           P  P  ++LLV   +GY  L EL+SR +L +QG
Sbjct: 67  IKPIAGCDVWLSNDDD-----------PAKPFRVLLLVRNHQGYLNLCELLSRAFLTNQG 115

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
           K    I   WLQ  G +GLI+L+GG  G + +A    ++  A      +  +F    Y+ 
Sbjct: 116 KGRAEIRREWLQ--GQDGLIVLSGGRGGDVGQALDAGNAVSALALARQWAHMFPGSYYIE 173

Query: 186 LQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
           LQR    G + Y ++  ++LA    LP+VAT+   FL E +++AH+  + +A   +++  
Sbjct: 174 LQRAGMDGDEAYTQA-AMRLAAEAGLPVVATHPVQFLDEYEFQAHEARVCIAEGEILANP 232

Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE--- 299
            R  R + + YL +  EM   F+D+P AL NTVEIA+RC+  L +  P LP F   +   
Sbjct: 233 RRVRRFSKEQYLLSSEEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFPTPDGVS 292

Query: 300 CDD--IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            DD  +Q  EE         GLE R+A        +    + Y +RL +E   I +M F 
Sbjct: 293 LDDYLVQLSEE---------GLEKRMAFLFPDEAERASKREQYYERLRWECKTIIQMGFP 343

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
           GYFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+S
Sbjct: 344 GYFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVS 403

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           MPDFDIDFCQD R+ VI YV+ KYG   V+QI TFG+L AKA +RD GR L MPY   D 
Sbjct: 404 MPDFDIDFCQDNRERVIDYVKEKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDG 463

Query: 475 LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
           L KLIP +P  P +L+  + D+  F++    +  V  L+++++ LEGL R+   HA G++
Sbjct: 464 LSKLIPFNPMDPWTLERTLKDEPAFKDRYEQEEEVRALVDLAKPLEGLTRNIGMHAGGVL 523

Query: 534 IGDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
           I    L+   P+Y +  + +  V+QF+   +E AGL+KFDFLGL+ LT+L  ++ ++ Q 
Sbjct: 524 IAPGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQF 583

Query: 593 GV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                  D+  +  DD   Y +L    T  +FQLES GM++ L+ ++P+  EDIIA+++L
Sbjct: 584 NEDKRDFDVMALSLDDPAAYKILCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLAL 643

Query: 650 YRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
           YRPGP+++ +V  + NRK+G+  +   H  ++  LK T GVI+YQEQVM I+Q++ GYSL
Sbjct: 644 YRPGPLESGMVDDFVNRKHGRAAVDYFHNDLESTLKSTYGVIVYQEQVMLISQIIGGYSL 703

Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             AD+LRRAMGKK  EEM K +E F  GA + G    +AV +F+L+ KFA YGFNKSH+A
Sbjct: 704 GGADLLRRAMGKKKPEEMAKHRELFEKGAKEKGHDPDLAVKLFDLMEKFAGYGFNKSHSA 763

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
           AYA+ISYQTAW+K ++P EFLAA+M+ +MD+ +K++ FC+DA+   ++++PP VN     
Sbjct: 764 AYALISYQTAWLKAYHPTEFLAATMSSDMDDTDKVQIFCRDAQDNGVEVLPPDVNFSGYR 823

Query: 828 FK-VGDNR---------IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876
           F+ V D           + Y L A+KG G      I+ A  +  PF +L DFC RV    
Sbjct: 824 FEPVADKHTEKGKPPRTMRYGLGAVKGTGQGAVEDILRARKEGGPFQNLFDFCRRVSKHA 883

Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
           +NRR +E+L+ AGA D    +R  +L S+    + A+  +  R+    ++F  +    SD
Sbjct: 884 VNRRTIEALIKAGAFDTIEPNRAAMLASVPTAMEAAE--QAARSANQSSLFGDDS---SD 938

Query: 937 KIT--LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
            +   L K +  +   +   E+  LG+Y+SGH  D ++  +R++
Sbjct: 939 VVAGELAKVAPWDLHKKLTEEKSALGYYYSGHLFDAWRDEVRQI 982


>gi|94309699|ref|YP_582909.1| DNA polymerase III subunit alpha [Cupriavidus metallidurans CH34]
 gi|93353551|gb|ABF07640.1| DNA polymerase III alpha subunit [Cupriavidus metallidurans CH34]
          Length = 1176

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1038 (40%), Positives = 621/1038 (59%), Gaps = 48/1038 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL++HS YS+++G + L++ +   A D   A+A+TD  N F  + F ++A   G+
Sbjct: 12   APRFVHLRLHSEYSIVDGIVRLDDAVKAAARDGMGALALTDLANAFGLIRFYKEARGGGV 71

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +P++G         ++ +TN      P    ++LLV    GY  L  L+SR +L +Q + 
Sbjct: 72   KPVVGA--------DVWLTNAEDRDKPA--RMLLLVQDRIGYLNLCTLLSRAWLGNQHRG 121

Query: 128  SVRICLSWLQEIGTEGL------IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                   WL E G EGL      I L+G   G + +A    + + A +    + ++F  R
Sbjct: 122  RAEFEPGWLGEPGEEGLPLATGLIALSGAMGGDVGQALANGNVEAARRAAEHWARVFPQR 181

Query: 182  LYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y+ LQR    G D Y   Q VQLA + +LP+VAT+   F++ +D+ AH+  + +A   +
Sbjct: 182  YYIELQRAGQPGTDAY-VPQAVQLAASMQLPVVATHPVQFMTPDDFTAHEARVCIAEGEL 240

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R R  T D Y K + EM ++F+D+P AL+N+VEIA+RC+  L++  P LP F   
Sbjct: 241  LANPRRTRKFTTDQYFKTQDEMTALFADIPSALQNSVEIAKRCNLTLELGKPRLPLFPTP 300

Query: 299  ECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L   A  GLE R   L      +     +Y  RL+FE   I +M F G
Sbjct: 301  DGMSL----DDYLVFMAKEGLEKRMLVLFPDEAERESKRAEYYARLEFETGTIIKMGFPG 356

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 357  YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVSM 416

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y  VD +
Sbjct: 417  PDFDIDFCQHGRDRVITYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDGV 476

Query: 476  CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP  P   V+L+ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 477  AKLIPFKPGKLVTLEEAKKEEPALAERERTEEEVRQLLELAQRVEGMTRNVGMHAGGVLI 536

Query: 535  GDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFL 589
                L+   P+Y      +   V+Q++   +E AGL+KFDFLGL TLT+L   ++ +  L
Sbjct: 537  APGRLTDFCPLYTQGTDGMSGVVSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYIRRL 596

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                   + S IP DD   + +L +  T+ +FQLES GM+  L+  +PD  EDIIALV+L
Sbjct: 597  DPSKADWNCSQIPLDDSPAFDILKSANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVAL 656

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  
Sbjct: 657  YRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGG 716

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM K ++ F  GA KNG++   A +IF+L+ KFA YGFNKSHAAAY
Sbjct: 717  ADLLRRAMGKKKPEEMAKHRDMFREGADKNGLTAQQADDIFDLMEKFAGYGFNKSHAAAY 776

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+++Y TAW+K H+P EF+AA+M+L MD+ +K+K   +D R   I+++PP VN     F 
Sbjct: 777  ALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYEDCRLNKIEVLPPDVNASEYRFA 836

Query: 830  VGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              D + I Y L  IKG G      I+ A  ++PFD L DFC RVD +++NRR +E+L+ A
Sbjct: 837  PTDAKTIRYGLGGIKGSGQGAIEDILRAREERPFDDLFDFCERVDRRQVNRRTIEALIRA 896

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSVEN 947
            GA D    +R QLL S+    + A   +K  +    ++F   +    S +  L       
Sbjct: 897  GAFDSLNDNRAQLLASVSIAMEAAD--QKAESANQVSLFDLMDDAGASHRPELVDEPRWT 954

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-IRGN------NIR---L 997
                 + E++ LG+YFSGH  D  +  +R+  +KG   ++   ++GN      ++R   +
Sbjct: 955  PKRTLQEEKQALGYYFSGHLFDASRDEVRRF-VKGTLAALEKEVQGNGGGYGRDVRGKVI 1013

Query: 998  AAMVVSKQQKKTRKGSRI 1015
            A ++   + + T++G  I
Sbjct: 1014 AGVITGIRTQMTQRGKLI 1031


>gi|67459636|ref|YP_247260.1| DNA polymerase III subunit alpha [Rickettsia felis URRWXCal2]
 gi|75535968|sp|Q4UK40|DPO3A_RICFE RecName: Full=DNA polymerase III subunit alpha
 gi|67005169|gb|AAY62095.1| DNA polymerase III alpha chain [Rickettsia felis URRWXCal2]
          Length = 1207

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1110 (38%), Positives = 632/1110 (56%), Gaps = 111/1110 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++  ++++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALYAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I            K        I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNI------------KYDIDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKLC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L E   EGLI L   + G + +     S + A       + + GDR Y  + R
Sbjct: 111  DHIDFEDLIEY-QEGLIALCCYTDGIVGKCLLARSEEQAMLFARKLQDILGDRFYFEIMR 169

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +++ E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HDLPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKTMHDAHDVLLCISAGVTKEYPDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y ++  EM+ +FSDLP A++NTV +  RC F    + P+LP F  K+       E
Sbjct: 230  VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATKDIS-----E 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
             + +R  A  GL  RLA    ++    Q       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIRKDAKEGLLARLATKFKSENIPLQNQEELKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PVSL QA+ +      A   +           +  +L+ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVSLEQAMREVPELANAAKGNGLYNLEGEAELIKLVLDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQILAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAAAY 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAAAYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ----------------FNI 814
            VISYQTA++K +YP EFL A + LE++N +KI  F Q+A+                 F++
Sbjct: 765  VISYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDSGIKIIAPNINISEGYFSV 824

Query: 815  QIMPPSVNT-----PCVDFKVG-----------------DNR------------------ 834
            + + P   T     P    +VG                 D+R                  
Sbjct: 825  KSVIPQAATCHPQGPLCHPRVGGYPEKVKTVLNHESMKMDSRFCGNDIKGSRNDIEDTGY 884

Query: 835  ------IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                  I ++L AIKGV     + +  E  A   F S+ DF  R+  K +N ++LE+L+ 
Sbjct: 885  DKEKSTIIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFIERLPLKSINSKLLENLIK 944

Query: 888  AGALDCFGYSRMQLLQSLDNIQKY-AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
            +G  D    +R+QL  S+  +  Y A +  +  +N+   I   +  + S  I +     +
Sbjct: 945  SGCFDELHDNRLQLFSSISKLLAYSASYHAEQESNQFSLI---KVSSLSPNILIASDYAD 1001

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIRLAAMVVSK 1004
            N+++ F  E   +G + S HPL  Y+ I  ++ I    +    +    N + LA ++   
Sbjct: 1002 NNTLAFY-EFESMGLFISNHPLTQYQEIFSRLNILNTADLHNNLPDGTNRVNLAGVI--- 1057

Query: 1005 QQKKTRKGSRIGWVT--FSEPAKEYEANFF 1032
            Q+K +R  +R  +VT   S+P   +E + F
Sbjct: 1058 QKKDSRMSARGRFVTLVLSDPENIFELSIF 1087


>gi|330950665|gb|EGH50925.1| DNA polymerase III subunit alpha [Pseudomonas syringae Cit 7]
          Length = 939

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/954 (42%), Positives = 569/954 (59%), Gaps = 55/954 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4   SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64  ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
            I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+ +QR 
Sbjct: 114 VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
           +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173 NRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHN 232

Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             D  YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233 YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
           +   R  +  GLE RLA        + Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289 DEYFRKVSFDGLEERLAVLLPKDTTEDYEARRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469 VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
            P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588 IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658 IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            +V  + NRK+G+ ++   +P +D       P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 648 GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
           Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F
Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825

Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+ RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ L+ 
Sbjct: 826 TVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIR 885

Query: 888 AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
           +GALD  G                +R  LL +L+   + A+   ++R + H ++
Sbjct: 886 SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDL 939


>gi|116619157|ref|YP_821313.1| DNA polymerase III subunit alpha [Candidatus Solibacter usitatus
            Ellin6076]
 gi|116222319|gb|ABJ81028.1| DNA polymerase III, alpha subunit [Candidatus Solibacter usitatus
            Ellin6076]
          Length = 1151

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1039 (40%), Positives = 615/1039 (59%), Gaps = 32/1039 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YSLL+GA  ++ ++  +   + PA+A+TD  NLF A++F   A A+GI P
Sbjct: 2    SFVHLHCHTDYSLLDGACDIDQLMKIMVEQKMPAVAMTDHGNLFGAVKFYNAAKASGIHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ +  + + + TN  +        +VLL    +GY+ LI+LVS  YL +      
Sbjct: 62   VIGCEVYVSQKGHKERTNTDR-----YNHLVLLCENQQGYKNLIKLVSTSYL-EGFYYKP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
            RI L  L +  +EGLI ++    G I      +    A +    +  +FG +  ++ +Q 
Sbjct: 116  RIDLDLLSQ-HSEGLIGMSACLRGHIPETILNDKYDDARRMAHQYGDIFGAKNFFLEIQD 174

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D+    ++V+L+     PLVATN+S +L ++D  AH++LM +      +  +R R
Sbjct: 175  HHLEQDKRLTPELVRLSSETGFPLVATNDSHYLRKDDARAHEILMCIQTGKSFNDPNRMR 234

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              TPD YLK R EM+ +F +L  +L+ T EIA+RC   L+      PRF      DI  E
Sbjct: 235  WSTPDFYLKTREEMMQLFGELEHSLDRTWEIAQRCHVKLEKVLDPFPRF------DIPTE 288

Query: 307  EENELRNKAVA--GLEVRLA--QGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359
               +   + VA  G E R    +   AKG   +  ++Y +RLD E+ +I  MKFSGYFL+
Sbjct: 289  HTTDTYFEYVARMGFEKRRGRLEAMKAKGTLKHDLEEYAERLDREIKMIQNMKFSGYFLV 348

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI++AK   IPVGPGRGS AGS+ +YA+ ITDIDPL++ LLFERFLNP+R+S PD D
Sbjct: 349  VWDFIRYAKDQGIPVGPGRGSAAGSLVSYAMEITDIDPLQYGLLFERFLNPERVSFPDVD 408

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC +RR EVI+YV  KYG E+VAQIITF +L A+AA++DVGR L+MP  +V+RL KL+
Sbjct: 409  VDFCMNRRGEVIQYVTQKYGREQVAQIITFNTLGARAAIKDVGRVLEMPLPEVERLTKLV 468

Query: 480  PNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P      +SLQ AI  +  F+EA   DP  D +L+++ +LEGL R+ S HAAG+VI   P
Sbjct: 469  P--ATLNISLQEAIDQEPGFKEAARKDPRCDDVLKVALRLEGLSRNCSVHAAGVVISPLP 526

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVD 597
            L  LVP+Y+  R ++ VTQF+M  +EK  L+K DFLGL TLTL+Q +L  + +R GV + 
Sbjct: 527  LQDLVPLYKTNRDEI-VTQFDMGGLEKLQLLKMDFLGLTTLTLIQDALRLIKKRHGVTIV 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +P DD  TY +     T G+FQ ESSGMR  L   QP  +ED+ AL +LYRPGPI  
Sbjct: 586  PEDLPLDDKGTYEVFCKGITSGVFQFESSGMRDILRRYQPSRLEDLTALNALYRPGPIQG 645

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  +  RK G++ +    P +  +L+ET GVI+YQEQVMQI+  ++GYSL +AD+LRR
Sbjct: 646  GMVDDFIERKWGRKAVQYDLPELQVLLEETYGVIVYQEQVMQISNRIAGYSLGDADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ+ERF+ GA + G ++     IF+L+ +FA YGFNKSH+AAYA +++ 
Sbjct: 706  AMGKKKLEEMVKQRERFVKGALERGFNQKKVEKIFDLMEQFAGYGFNKSHSAAYAYLAFV 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYPV+F+AA +T E  N  K+ K+  + R+  I+I+PP VN     F    + I
Sbjct: 766  TAYLKAHYPVDFMAALLTSETGNTAKVVKYINECREMGIKILPPDVNHSEWSFTPDGDAI 825

Query: 836  YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + + AIK VG +    I +  A+   F SL +FC +VD   +NRR++ESL+ AGA+D  
Sbjct: 826  RFGMGAIKNVGQSAVEAIGKTRAEVGKFPSLHEFCEKVDLGAVNRRMIESLIRAGAMDSL 885

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFE 953
              +R Q   +++   +     +++R +    +F             L      +   +  
Sbjct: 886  EGTRSQKFAAVEGAMEAGARAQRDRESGQVGLFGEVIAADEPHSAPLPNIPDWSEKEKLA 945

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ +LGF+ +GHP+D Y   + ++            + + + +  ++    +K+ R+G 
Sbjct: 946  GEKELLGFWVTGHPMDRYMEKVAELANADTSSLEGLAKNHEVAICGVLTGIARKRNREGK 1005

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
                +T  + A   EA  F
Sbjct: 1006 PWCAMTLEDRAGSVEALLF 1024


>gi|260772237|ref|ZP_05881153.1| DNA polymerase III alpha subunit [Vibrio metschnikovii CIP 69.14]
 gi|260611376|gb|EEX36579.1| DNA polymerase III alpha subunit [Vibrio metschnikovii CIP 69.14]
          Length = 1109

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/1006 (40%), Positives = 594/1006 (59%), Gaps = 55/1006 (5%)

Query: 56   LEFSQKACAAGIQPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            ++F   A + GI+PIIG    +   +  D L               I +L     GY+ L
Sbjct: 1    MKFYGTAHSCGIKPIIGADFTLRSDEFADELT-------------KITILAKNNIGYKNL 47

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
              L+S  YL    +    I   WL +   EGLI+L+GG +G I RA    +  +AEK + 
Sbjct: 48   TLLISEAYLRGHVQHQPVIDKQWLVK-HAEGLIILSGGKNGEIGRALLKGNQALAEKCVE 106

Query: 173  TFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++  F D  Y+ L R    D   ES +   + LA   +LP+VATN  +FL+ E ++AH+
Sbjct: 107  FYQTYFADHFYLELVRTGRADE--ESYLHFALDLAEQTQLPVVATNEVVFLNAEQFDAHE 164

Query: 230  VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            + +A+     +    RP+  +P  YL+   EM  +F+D+P+ALEN+VEIA+RC+  +++ 
Sbjct: 165  IRVAIHDGYTLEDPRRPKNYSPQQYLRTEQEMCELFADIPQALENSVEIAKRCNVTVRLG 224

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFEL 345
               LP F       +  EE   +++K   GLE RL         +     +Y +RLD EL
Sbjct: 225  EYFLPNF---PTGGLAIEEFLVVKSKQ--GLEERLEFLFPDPQVRAERRPEYDERLDIEL 279

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFE
Sbjct: 280  QVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFE 339

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L
Sbjct: 340  RFLNPERVSMPDFDVDFCMDKRDQVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVL 399

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
              P+  VDR+ KLIP DP   +  +A   +   +E   AD  V  L++  + LEG  R+A
Sbjct: 400  GHPFGFVDRISKLIPPDPGMTLE-KAFKAEPALQELYDADEEVKELIDKCRILEGCTRNA 458

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
              HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +
Sbjct: 459  GKHAGGVVISPTTITDFAPLYCDAEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWA 518

Query: 586  LDFLAQRGVKVD-----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            L  +  R   +      +  IP  D  ++ LL    T  +FQLES GM++ ++ ++PDC 
Sbjct: 519  LGLINPRRTALGEEPLRIEAIPLQDEASFRLLQKSETTAVFQLESRGMKELIKRLKPDCF 578

Query: 641  EDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQE 693
            EDIIALV+L+RPGP+ + +V N  +RK+G+E I        H  +  +L+ T G+I+YQE
Sbjct: 579  EDIIALVALFRPGPLQSGMVDNFIDRKHGREVISYPDEKWQHESLKEILEPTYGIILYQE 638

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+
Sbjct: 639  QVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRAIFKEGAENNGVDGELAMKIFDLV 698

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSH+AAYA++SYQT W+KTHYP EF+AA MT +MDN EK+     + ++  
Sbjct: 699  EKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECQRMG 758

Query: 814  IQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871
            + ++PP +N+    F V +N  I Y + AIKGVG      I+++ S +  F  L DFC+R
Sbjct: 759  LTVLPPDINSGLYSFNVDENGAIVYGIGAIKGVGEGPIEAILDSRSKNGYFKDLFDFCAR 818

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            +D KK+N+RV+E L+ AGALD  G  R  ++ SLD+  K A    +       ++F    
Sbjct: 819  IDLKKVNKRVIEKLILAGALDRLGPHRAAMMASLDDAVKAASQHHQAEAFGQADMF---- 874

Query: 932  GTFSD--KITLEKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            G  +D  +   +K++        V  E E+  LG Y +GHP++ Y   L K       E+
Sbjct: 875  GVLTDAPEEVEQKYTQVPPWPEKVWLEGERETLGLYLTGHPINQYLKELPKYTSCRLNEA 934

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T R  ++ LA +V++ +   T++GSRIG +T  + +   E   +
Sbjct: 935  TPTRRDQSLTLAGLVIAARVMTTKRGSRIGLMTLDDRSGRIEVMLY 980


>gi|15604610|ref|NP_221128.1| DNA polymerase III subunit alpha [Rickettsia prowazekii str. Madrid
            E]
 gi|6226600|sp|O05974|DPO3A_RICPR RecName: Full=DNA polymerase III subunit alpha
 gi|3861305|emb|CAA15204.1| DNA POLYMERASE III, ALPHA CHAIN (dnaE) [Rickettsia prowazekii]
 gi|292572428|gb|ADE30343.1| DNA polymerase III alpha chain [Rickettsia prowazekii Rp22]
          Length = 1182

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1092 (38%), Positives = 622/1092 (56%), Gaps = 100/1092 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++     + PA+ ++D  NLF +LEFS  A    +Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELALLHKMPALCLSDRGNLFGSLEFSLYAVKKKLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I    N                I+L+     GY+ L++L S  +     K  
Sbjct: 63   PIHGVILNIQYDIN------------AFAQILLIAKDETGYKNLLKLSSLTF----TKND 106

Query: 129  VRICLSWLQEIG-------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             +IC    + IG        EG+I L   + G + +       + A       + + GDR
Sbjct: 107  RKIC----EHIGFEDLIKYQEGVIALCCYTDGIVGKCLLARKQEQAILFARRLQAILGDR 162

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y  + RH    +++ E+  +Q+A    +P+VATN  LF  +  + AHDVL+ ++     
Sbjct: 163  FYFEIMRHDLPEEQFIENSYIQIASELSIPIVATNKVLFSEKSMHYAHDVLLCISEGVTK 222

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               DR  V+ + Y K+ +EM  +FSDLP A++NT+ +  RC F    + P+LP F     
Sbjct: 223  EYPDRKTVSENCYFKSPAEMRKLFSDLPNAIQNTINLRERCYFAAHPNPPMLPNF---ST 279

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKF 353
             DI   E   +R  A  GL  RL     A+    +       +Y  RL++EL++I  M F
Sbjct: 280  QDIS--ETYLIRKYATEGLLARLVTKFKAENISLEHQEKLKTEYFTRLNYELDIICNMNF 337

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
            +GYFLIV+DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+
Sbjct: 338  AGYFLIVSDFIKWSKKQGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERI 397

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPDFDIDFCQ+RR+EVI YV++KYG  RV QIITFG +QAKA ++DV R L +PY   D
Sbjct: 398  SMPDFDIDFCQERREEVINYVRSKYGPNRVGQIITFGKMQAKAVIKDVARVLSLPYKLAD 457

Query: 474  RLCKLIPNDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYR 523
             L +L+P    +PVSL QAI +      A   +           +  +L+ S  LEGL+R
Sbjct: 458  YLTELVPFSAINPVSLEQAIREVPELANAAKGNGLYNLEGDAELIKLVLDTSLILEGLHR 517

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
            H+STHAAGIVI    L  +VP+Y+D  +D+ +  ++MK+ E AGLIKFDFLGL+TLT++ 
Sbjct: 518  HSSTHAAGIVIAGTDLVDIVPVYKDANADMLIVGYSMKYSEIAGLIKFDFLGLQTLTVIT 577

Query: 584  KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
                 L ++G+K+D   + FDD +TY +L     +G+FQ ES GM+ AL  ++PD I D+
Sbjct: 578  NCKKLLKEQGIKIDFDDMTFDDKKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDL 637

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            IAL +LYRPGP++NI  Y   K+  ++   +H L++P+L+ET GV+IYQEQV +IAQ+L+
Sbjct: 638  IALGALYRPGPMENIPTYIACKHKLQQPDYLHKLLEPILEETYGVVIYQEQVQRIAQVLA 697

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GY+L  AD+LRRAMGKKIK+EM++Q+E F+ GA  N IS + A +IF  +AKFA YGFNK
Sbjct: 698  GYTLGAADLLRRAMGKKIKKEMEEQEEIFVKGAIANNISPSQAKSIFSTVAKFAGYGFNK 757

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            +HAAAY VISYQTA++K +YP EFL A + LE++N +KI  F Q+A+   I+I+ P++N 
Sbjct: 758  AHAAAYGVISYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINI 817

Query: 824  PCVDFKV-------------------------------------GDNRIYYSLAAIKGVG 846
                F V                                      ++ I ++L AIKGV 
Sbjct: 818  SEGYFSVKSSNTVITHSTKSVISRLNCDIKKIAKDTAVKPLYCKDESTIIFALGAIKGVT 877

Query: 847  TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                + +  E  A   F S+ DF  R+  K +N ++LE+L+ AG  D    +R+QL  S+
Sbjct: 878  ANFGKLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKAGCFDELHDNRLQLFLSI 937

Query: 906  DNIQKYA-QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
              +  Y+  + ++  +N+   I   +  + S  I +     + +++ F  E   +G + S
Sbjct: 938  PKLIAYSTSYHQEQESNQFSLI---KVSSLSPTILVSSDYADKNTLAFY-EFEAMGLFLS 993

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVT--F 1020
             HPL  Y+ I  ++ I    +    +    N + LA ++   Q+K +R  +R  +VT   
Sbjct: 994  NHPLTEYQGIFSRLNILNTRDLYNKLPNGTNRVTLAGVI---QKKDSRMSARGRFVTLVL 1050

Query: 1021 SEPAKEYEANFF 1032
            S+P   +E   F
Sbjct: 1051 SDPENIFELTIF 1062


>gi|224369575|ref|YP_002603739.1| DnaE [Desulfobacterium autotrophicum HRM2]
 gi|223692292|gb|ACN15575.1| DnaE [Desulfobacterium autotrophicum HRM2]
          Length = 1184

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1050 (39%), Positives = 627/1050 (59%), Gaps = 39/1050 (3%)

Query: 8    SPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            +PS F HL VH+ +SLL+GA+ L+ +L +        +AITD   +F    F++KA   G
Sbjct: 4    TPSPFCHLHVHTEFSLLDGAIRLDALLKRCKEFNMDTVAITDHGTMFGTAPFNEKARKVG 63

Query: 67   IQPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            IQPI+GC++ +    +++     N+G      +  +VLL    EGY  L +LVS +   +
Sbjct: 64   IQPILGCEVYVAPRSIRNKTAEDNKG------LNHLVLLAKDREGYGNLCKLVS-IAQFE 116

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182
                  RI    L +  ++GLI L+    G I +    N   +A      +   FG D  
Sbjct: 117  GFYYKPRIDRELLTKY-SKGLIALSACLKGDIPQKIIHNQMDLAFDSARYYLDTFGEDNF 175

Query: 183  YVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ +Q++    + + +Q + +++    +P+VATN+  +LS +   AH+ L+ +     ++
Sbjct: 176  FLEIQKNGMEIQEKVNQGLWEVSKKLSIPMVATNDCHYLSRDHVRAHEALLCIQTGNTLN 235

Query: 242  QKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---- 296
              +R +   D  Y K+  EM++ F   P A+ENT+ IA+RC+          PR+     
Sbjct: 236  DANRFKFDSDELYFKSADEMIADFKTYPGAIENTLLIAKRCNVEFGEKVYHFPRYTSAQG 295

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKF 353
            EK  +D  +      + +A  G E RL    + +     D   YR+RL +E+ VI  M F
Sbjct: 296  EKSGEDCVQTAGEIFKRQAQEGFERRLKM--LKRKNPNLDEALYRERLAYEIGVILDMGF 353

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFLIVADFI++++++NIPVGPGRGS AGS+ AYA+ IT +DP+   L+FERFLNP R+
Sbjct: 354  PGYFLIVADFIRYSREHNIPVGPGRGSAAGSMVAYAMEITALDPIAHGLIFERFLNPSRI 413

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            SMPD D+DFC + RDEV +YV ++YG  + V+QIITFG L+AKA +RDVGRAL +P  +V
Sbjct: 414  SMPDIDVDFCIEGRDEVYKYVIDRYGGADYVSQIITFGKLKAKAVVRDVGRALSVPLPEV 473

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            D L KLIP++  +    QA+ D  R  E    DP    L++I+  LEGL R ASTHA G+
Sbjct: 474  DVLAKLIPDNAKN--LGQALKDVPRIMELVNQDPVKKELIDIALLLEGLPRQASTHACGV 531

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI D+PL + +P Y+    ++ VTQF+M ++EK GL+KFDFLGL+ LT+++ +LD L ++
Sbjct: 532  VISDKPLVEYLPTYKGKEGEV-VTQFDMNFVEKLGLVKFDFLGLRNLTVIKNTLDLLKKQ 590

Query: 593  GVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
              +V DL  I  DD  TY LL    T G+FQLESSGM++ +  +QP C  DI+ALV+LYR
Sbjct: 591  SKEVPDLLEIDMDDPPTYELLARADTTGVFQLESSGMKELITRLQPACFSDIVALVALYR 650

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+D+ +   Y  RK+G+E +V + P ++P+LKET GVI+YQEQVM+IA +L+ YS+++
Sbjct: 651  PGPLDSGMADSYVERKHGREDVVYLFPQLEPILKETYGVILYQEQVMKIAGVLANYSMAD 710

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD LR+AMGKKI   M++ +  F+ GA +N +    A  +F+L+ KF  YGFNKSH+AAY
Sbjct: 711  ADGLRKAMGKKIPAMMEEHRGLFLKGAKENNLDGAKAAELFDLMEKFGGYGFNKSHSAAY 770

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+I +QTA++K HYP+E++AA MT +M N++ + KF  + R   I ++PP VN     F 
Sbjct: 771  ALICFQTAYLKAHYPLEYMAALMTSDMSNIDSVVKFIDECRNHEINVLPPDVNESESVFT 830

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V    I + LAA+KG+G+     I+E  S + PF S+ DFC RV+  K+N+RVLE+L+  
Sbjct: 831  VAPAAIRFGLAAVKGIGSAAIDSIVEIRSQEGPFTSIYDFCERVNLTKVNKRVLEALIKC 890

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D  G  R Q++  L++   +   +++ + +   ++FA  +G   + + L   S+ + 
Sbjct: 891  GAFDSTGSKRSQMMAVLEDALDHGNRIQREKADAQMDLFADTEG--GEALPLSVPSMPDI 948

Query: 949  SVRFEN-----EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                +N     E+  LGFY +GHPLD Y+ +++K      E  V T  G ++R+   +  
Sbjct: 949  PELDDNDLLAMEKETLGFYITGHPLDRYEEMIKKFANVNSETLVETPEGQSVRMGGALRP 1008

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +  KT+KG  + +    +     E   FP
Sbjct: 1009 LKILKTKKGDMMAFAALEDKKGSVEVVIFP 1038


>gi|119946582|ref|YP_944262.1| DNA polymerase III, alpha subunit [Psychromonas ingrahamii 37]
 gi|119865186|gb|ABM04663.1| DNA polymerase III, alpha subunit [Psychromonas ingrahamii 37]
          Length = 1173

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1055 (41%), Positives = 616/1055 (58%), Gaps = 54/1055 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K P F+HL+VHS YS+++G   +  ++ K AA   PA+AIT+  N    ++F   A  AG
Sbjct: 12   KQPKFIHLRVHSDYSMVDGVTKIKPLVAKAAALNMPALAITEQTNFCGLVKFYGAAHDAG 71

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G  +D  ++  L    Q +        I  L     GY+ L EL+S+ YL     
Sbjct: 72   IKPIVG--VDFWVKSELLADEQFR--------ITALAMNNAGYKNLTELISKAYLRGHVG 121

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E   +G+I+L+GG  G + +     + ++A + +  +++ F  R Y+ L
Sbjct: 122  GRAVIDQDWLAE-HNQGIILLSGGKDGDLGKVLLKGNHELAVEIIQFYQQYFAQRYYIEL 180

Query: 187  QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R +R  +       +  A  ++LP+VATN  +F  +  Y+AH++ + +     +    R
Sbjct: 181  IRTNRLNEETYLHYALDWAEKYQLPVVATNEVVFADKALYDAHEIRVCINQGYTLGDNRR 240

Query: 246  PRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE----- 299
            P+   D  YL+++ EM  +F+D+PEAL+N+VEIA+RC+  L++    LP F   +     
Sbjct: 241  PKQYSDEQYLRSQEEMCELFADIPEALKNSVEIAKRCNVTLRLGEYFLPDFPTGDMSITD 300

Query: 300  --CDDIQKEEENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKF 353
              CD  +K            GLE RLA    + A         Y QRL  EL+VI  M F
Sbjct: 301  YFCDVSRK------------GLEDRLAILFDKNAPEFADIRAPYDQRLQIELDVINTMGF 348

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFLIV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL   LLFERFLNP+R+
Sbjct: 349  PGYFLIVMEFIQWSKDNKIPVGPGRGSGAGSLVAYALKITDLDPLELELLFERFLNPERV 408

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPDFDIDFC DRRDEVI +V   YG + V+QIITFG++ +KA +RDVGR L  PY  VD
Sbjct: 409  SMPDFDIDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMASKAVIRDVGRVLGHPYGFVD 468

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
             + KLIP  P   +S +A A++ R +E       V  L+++ + LEG  R+A  HA G+V
Sbjct: 469  GISKLIPPTPGMTLS-KAFAEEPRLQERYDGSEEVRALIDMCRTLEGTIRNAGKHAGGVV 527

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQR 592
            I    ++   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++Q +LD   A +
Sbjct: 528  ISPTTITDFSPLYCDELGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIVQWALDMANAHK 587

Query: 593  GVKVDLSL----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
              + + +L    I   +   + LL    T  +FQLES GM+  +  +QPD  ED+IALV+
Sbjct: 588  HARGEETLFIEKICLTEPACFELLKRYETTAVFQLESRGMKDLIRRLQPDSFEDMIALVA 647

Query: 649  LYRPGPIDNIVVYN--NRKNGKEKIV-----SIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            L+RPGP+ + +V N   RK+G+E +        HP ++ +L  T G+I+YQEQVMQIAQ+
Sbjct: 648  LFRPGPLQSGMVDNFIERKHGREAVSFPDEKWQHPSLEEILAPTYGIILYQEQVMQIAQV 707

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            LSGY+L  AD+LRRAMGKK  EEM KQ+E F  GA  NGI   +A+ IF+L+ KFA YGF
Sbjct: 708  LSGYTLGGADMLRRAMGKKKPEEMAKQRETFEQGAIDNGIDGELAMKIFDLVEKFAGYGF 767

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NKSH+AAYA++SYQT WMKT YP  F+AA M+ +MDN EKI     + +   + + PP V
Sbjct: 768  NKSHSAAYALVSYQTLWMKTFYPSYFMAAVMSADMDNTEKIVTLVAECQSMGLDLGPPDV 827

Query: 822  NTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNR 879
            N     F V  D RI Y + A+KGVG      I+EA +A   F  L DFC+R+D K  N+
Sbjct: 828  NEGLFKFNVDPDLRIIYGIGAVKGVGEGPVDAIIEARTAGGKFIDLFDFCNRIDLKHCNK 887

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R+LE L+ AGALD  G  R  L+++L N  K A   +K  +    ++F     T S++I 
Sbjct: 888  RILEKLILAGALDKLGPHRAALMETLPNALKSALQHKKAESFGQSDLFGVLT-TDSEEIA 946

Query: 940  LEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
             +  SV+    +     E+  LG Y +GHP++ Y+  +R        + VA  RG N R+
Sbjct: 947  DKFSSVDKWPEKQWLAGEKETLGLYLTGHPINQYETDIRAFHCLKLSDLVANRRGQNSRV 1006

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A +++S +   T+ G R+G +T  + +   E   F
Sbjct: 1007 AGLILSMRIMVTKAGKRMGIITLDDKSARMEITVF 1041


>gi|33596339|ref|NP_883982.1| DNA polymerase III subunit alpha [Bordetella parapertussis 12822]
 gi|33602375|ref|NP_889935.1| DNA polymerase III subunit alpha [Bordetella bronchiseptica RB50]
 gi|33566108|emb|CAE37008.1| DNA polymerase III alpha subunit [Bordetella parapertussis]
 gi|33576814|emb|CAE33893.1| DNA polymerase III alpha subunit [Bordetella bronchiseptica RB50]
          Length = 1163

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/1007 (40%), Positives = 601/1007 (59%), Gaps = 54/1007 (5%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           +++ +   P FVHL+VHS +S+ +G + +++++ ++A   QPA+A+TD +N+F  ++F +
Sbjct: 1   MSEAVTNPPPFVHLRVHSEFSVSDGIVRISDLIKRVAKLGQPAVALTDLSNIFGLIKFYK 60

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            A  AG++P+ G  + +   D+ +       PF     ++LLV   +GY  L EL++R +
Sbjct: 61  GARGAGVKPVAGSDVWLTNDDDRE------KPF----RLLLLVRNHQGYLNLCELLTRSF 110

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
           L +Q K    +   WLQ  G EGLI+L+G   G + +A    ++  A      + +LF  
Sbjct: 111 LENQYKGRAEVRREWLQ--GQEGLIVLSGARGGDVGQALEAGNAVTALSLARQWGQLFPG 168

Query: 181 RLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             Y+ LQR    G + Y ++  ++LA    LP+VAT+   FL  ++++AH+  + +A   
Sbjct: 169 SYYIELQRAGFDGDETYTQA-AMRLAAEAGLPVVATHPVQFLDRDEFQAHEARVCIAEGE 227

Query: 239 VVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
           +++   R  R T D YL +  EM   F+D+P AL NTVEIARRC+  L +  P LP F  
Sbjct: 228 ILANPRRVRRYTQDQYLLSSEEMARRFADVPSALANTVEIARRCNLTLVLGKPRLPNFPT 287

Query: 298 KE---CDD--IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIA 349
            +    DD  +Q  EE         GLE RL         +      Y +RL +E   I 
Sbjct: 288 PDGVTLDDYLVQLSEE---------GLEKRLQFLFPDEAERNAKRDQYYERLRWECKTII 338

Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
           +M F GYFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLN
Sbjct: 339 QMGFPGYFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLN 398

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
           P+R+SMPDFDIDFCQD R+ VI YV+ KYG E V+QI TFG+L AKA +RD GR L MPY
Sbjct: 399 PERVSMPDFDIDFCQDNRERVIDYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMPY 458

Query: 470 SQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
              D L KLIP +PA P +L+  + D+  F++    +  V  L+++++ LEGL R    H
Sbjct: 459 LFCDALSKLIPFNPADPWTLERTLKDEPAFKDRYEQEEEVRALVDLARPLEGLTRSIGMH 518

Query: 529 AAGIVIGDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           A G++I    L+   P+Y +  + +  V+QF+   +E AGL+KFDFLGL+ LT+L  ++ 
Sbjct: 519 AGGVLIAPGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVR 578

Query: 588 FLAQRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
           F+ Q        D+  +  DD   Y +L    T  +FQLES GM++ L+ ++P   EDII
Sbjct: 579 FVRQFNADKRDFDVMALSLDDQAAYKVLCDANTTAVFQLESRGMKELLKKLRPSTFEDII 638

Query: 645 ALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
           A+++LYRPGP+++ +V  + NRK+G+  +   HP ++  L+ T GVI+YQEQVM I+Q++
Sbjct: 639 AMLALYRPGPLESGMVDDFVNRKHGRAAVDYFHPDLEGTLRSTYGVIVYQEQVMLISQII 698

Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            GYSL  AD+LRRAMGKK  EEM K +E F  GA + G    +AV +F+L+ KFA YGFN
Sbjct: 699 GGYSLGGADLLRRAMGKKKPEEMAKHRELFEQGAREKGHDPDLAVKLFDLMEKFAGYGFN 758

Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           KSH+AAYA+I+YQTAW+K ++P EFLAA+++ +MD+ +K++ F +DA+   ++++PP VN
Sbjct: 759 KSHSAAYALIAYQTAWLKAYHPTEFLAATLSSDMDDTDKVQIFVRDAQDNGVEVLPPDVN 818

Query: 823 TPCVDFK-VGDNR---------IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
                F+ V D           + Y L A+KG G      I+ A  +  PF +L DFC R
Sbjct: 819 ASGYRFEPVADKHTEQGKPPRTMRYGLGAVKGTGQGAVEEILRARQEGGPFANLFDFCRR 878

Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
           V    +NRR +E+L+ AGA D    +R  +L S+    + A+  +  R+    ++F  + 
Sbjct: 879 VSKHAVNRRTIEALIKAGAFDTIEPNRAAMLASVGTAMEAAE--QAARSANQSSLFGDDS 936

Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
           G       L K +  N       E+  LG+YFSGH  D ++  +R++
Sbjct: 937 GDVVAG-ELTKVAPWNLHTTLTEEKTALGYYFSGHLFDAWRDEVRRI 982


>gi|56477932|ref|YP_159521.1| DNA polymerase III alpha chain [Aromatoleum aromaticum EbN1]
 gi|56313975|emb|CAI08620.1| DNA polymerase III alpha chain [Aromatoleum aromaticum EbN1]
          Length = 1164

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1046 (40%), Positives = 625/1046 (59%), Gaps = 44/1046 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL++HS YS+ +G + ++  + + AAD  PA+ I+D  NLF  ++F + A   G++
Sbjct: 7    PCFIHLRLHSEYSISDGIVQIDQAIARAAADAMPALGISDLANLFGMVKFYKGARGKGMK 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P++G         +  +TN      P     +L+    +GY +L EL++R YL ++ +  
Sbjct: 67   PVVGV--------DTWITNDADRDKPF--RALLICRNRKGYGQLCELLTRAYLDNKYRSR 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   W  +     L+ L+G   G I +A    +  VAE+    + +LF D  Y+ LQR
Sbjct: 117  AEMHRQWFADGAASDLLCLSGAMGGDIGQALVNGNPDVAERLAAEWAQLFPDAFYIELQR 176

Query: 189  --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
              H G + Y   Q VQLA    LP+VAT+   FL  ED++AH+  + +A   V++ K RP
Sbjct: 177  AGHPGTEAYIR-QAVQLAGKLGLPVVATHPVQFLEPEDFKAHEARVCIAQGYVLADKRRP 235

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  T + Y K++ EM ++F+D+PEALEN+VEIARRCS  +Q+    LP+F   E   +  
Sbjct: 236  RDFTEEQYFKSQDEMCALFADIPEALENSVEIARRCSLTVQLGKNFLPQFPTPEGMTL-- 293

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVAD 362
              +  L  +A +GLEVRLA+   A+    +    Y  RL FE + I +M F GYFLIVAD
Sbjct: 294  --DEFLVAEAKSGLEVRLAELYPAEAERERQRRTYEDRLKFETDTIVQMGFPGYFLIVAD 351

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK+N +PVGPGRGSGAGS+ AY+L ITD+DPL ++LLFERFLNP+R+SMPDFDIDF
Sbjct: 352  FINWAKENGVPVGPGRGSGAGSLVAYSLRITDLDPLAYALLFERFLNPERVSMPDFDIDF 411

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQD R  VI YV+++YG E V+QI TFG++ +KA +RDVGR L +PY   DRL KLIP +
Sbjct: 412  CQDNRYRVIEYVRSRYGKEAVSQIATFGTMASKAVVRDVGRVLDLPYGLCDRLSKLIPIE 471

Query: 483  PAHPVSL-QAIADDSRFREARLAD----PSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
             A PVSL +A   +S+  E  + D     SV  L  +++ LEGL R+   HA G++I   
Sbjct: 472  GAKPVSLAKAYEMESQIGEM-MKDGNDGESVQELWSLAEPLEGLSRNVGMHAGGVLIAPG 530

Query: 538  PLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595
             L+   P+Y  D     PV+QF+   +E  GL+KFDFLGL+ LT+++ +++++ +  G K
Sbjct: 531  KLTDFCPLYIADGDEATPVSQFDKDDVEAVGLVKFDFLGLRNLTIIELAVEYVERLTGEK 590

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             DL+ +PF D   Y +L    T  IFQ+ES GM++ L+ + PD  EDIIA+++LYRPGP+
Sbjct: 591  PDLAALPFTDPAAYQILKDANTTAIFQVESEGMKKLLKKLAPDRFEDIIAVLALYRPGPL 650

Query: 656  DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             + +V  +  RK G+++I   HP + P L  T GVI+YQEQVMQI+Q++ GY+L  AD+L
Sbjct: 651  GSGMVDDFILRKKGQQEIDYFHPDLKPCLDPTYGVIVYQEQVMQISQIIGGYTLGGADML 710

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM K +E   +GA + G    +A  +F+L+ KFA+YGFNKSH AAYAV++
Sbjct: 711  RRAMGKKKAEEMAKHRETIAAGAKQKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAVVT 770

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y TAW+K H+   F+AA+M+ ++DN + I+ F +DA    + I+PP VN     F   D 
Sbjct: 771  YHTAWLKAHHCAAFMAATMSADLDNTDTIRIFFEDAVANGVTILPPDVNASDFRFVPTDR 830

Query: 834  R-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + I Y L A+KG G    R I+ A  A   F  L DFC+RVD + +NRRV+E+L+ AGA 
Sbjct: 831  KTIRYGLGAVKGAGEPAVRAILAAREAGGAFRDLFDFCARVDRRAVNRRVIEALIRAGAF 890

Query: 892  DCFGYS----RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
            D    S    R +LL ++   ++   Q           ++     G   + +    +S  
Sbjct: 891  DLIEPSGTADRARLLATVGLAMEAAEQAAANAMQGGLFDLIPEAAGAAPEYVRARPWSER 950

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                R + E+  +GF+ SGHP + ++  +R+   +   E   +   + + LA +V+  + 
Sbjct: 951  E---RLKEEKLAIGFFLSGHPFNSFRKEVRRFVRRPLAELEPS--RDLLMLAGVVMDVRT 1005

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            K T +G ++ +V   + +   E + F
Sbjct: 1006 KMTGRG-KMAFVVLDDGSHVREVSVF 1030


>gi|296159171|ref|ZP_06841998.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1]
 gi|295890732|gb|EFG70523.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1]
          Length = 1193

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/1028 (40%), Positives = 617/1028 (60%), Gaps = 52/1028 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++++   A D Q A+A+TD  N F  + F ++A   G++
Sbjct: 7    PRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC + I   D+ +  ++          ++LLV    GY  L EL+S+  L +Q +  
Sbjct: 67   PIAGCDVWITNPDDREKPSR----------LLLLVKDRRGYLNLCELLSKASLTNQYRGR 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL+    EGL+ L+G   G +  A    + + A++  L + K+F    Y+ +QR
Sbjct: 117  AEIEAGWLESGLGEGLLALSGAQQGDVGLALAAGNEEAAKRNALHWAKVFPGGFYIEVQR 176

Query: 189  --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                G + Y + Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++   R 
Sbjct: 177  CGQPGGEHYVQ-QAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRS 235

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R TP+ Y + + EM ++F+D+P AL N+VEIA+RC+  L++  P LP F   +   +  
Sbjct: 236  KRFTPEQYFRTQEEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 293

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L + +  GLE RL Q    A  +    + Y QRL+FE   I +M F GYFLIVAD
Sbjct: 294  --DDYLVHLSKEGLEKRLEQLYPDAAEREAQRETYYQRLEFECGTIIKMGFPGYFLIVAD 351

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 352  FINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDF 411

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 412  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 471

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LLE++Q++EGL R+   HA G++I    L+ 
Sbjct: 472  PGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTD 531

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +    K D SL
Sbjct: 532  FCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSL 591

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPGP+D I
Sbjct: 592  AQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLI 651

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+E +    P ++ +LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 652  PSFCARKHGREVVEYPDPRVESVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 711

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM + +E F  GA+KNG++   A  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 712  KKKAEEMAEHRELFRQGAAKNGLAGEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 771

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP VN     F+     D + 
Sbjct: 772  LKAHHPAEFMAANMSLAMDDTDKVKILFEDCLVNKMAVLPPDVNLSAYRFEPVAEADGKR 831

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  + PF  + DFC+RVD + +NRR +E+L+ AGA 
Sbjct: 832  SRTIRYGLGAIKGSGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALIRAGAF 891

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--SDKITLEKFSVEN-- 947
            D    +R QL+ S+    + A+    N         A + G F   D  +     V+   
Sbjct: 892  DTLHANRAQLIASVSLAMEAAEQASAN---------ALQAGLFDMGDSPSQGHELVDEPE 942

Query: 948  --SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004
                 + + E+  LGFY SGH  D YK  +R+       + +  ++ G +  +A ++ S 
Sbjct: 943  WPEKKKLQEEKAALGFYLSGHLFDAYKDEVRRF----VRQKIGELKEGRDKLVAGVIASL 998

Query: 1005 QQKKTRKG 1012
            + + T++G
Sbjct: 999  RTQMTQRG 1006


>gi|194288945|ref|YP_002004852.1| DNA polymerase III subunit alpha [Cupriavidus taiwanensis LMG 19424]
 gi|193222780|emb|CAQ68783.1| DNA polymerase III, alpha subunit [Cupriavidus taiwanensis LMG 19424]
          Length = 1170

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1040 (41%), Positives = 621/1040 (59%), Gaps = 56/1040 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL++HS YS+++G + L++ +   AAD   A+A+TD  N F  + + ++A   G+
Sbjct: 3    APRFVHLRLHSEYSIVDGIVRLDDAVKAAAADGMGALALTDLANAFGLIRYYKEARGKGV 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +P++G         ++ +TN      P    ++LLV    GY  L  L+SR +L +Q + 
Sbjct: 63   KPVVGA--------DVWLTNAEDRDKPA--RLLLLVQDRRGYLNLCMLLSRAWLGNQHRG 112

Query: 128  SVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
               I  +W QE G +      GLI L+G   G I  A    ++  A +    +  +F  R
Sbjct: 113  RAEIDPAWFQEPGEDDLPLATGLIALSGAMGGDIGMALANGNADGARRAAQHWAAVFPQR 172

Query: 182  LYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y+ LQR  H G D Y + Q VQLA + +LP+VAT+   F++ +DY AH+  + +A   +
Sbjct: 173  FYIELQRAGHAGTDAYVQ-QAVQLAASLQLPVVATHPVQFMTPDDYTAHEARVCIAEGEL 231

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R R  T D Y K + EM ++F+D+P ALEN VEIARRC+  L++  P LP F   
Sbjct: 232  LANPRRTRRFTTDQYFKTQDEMCALFADIPSALENAVEIARRCNLTLELGKPRLPLFPTP 291

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L   A  GLE RLA        +     +Y  RL+FE   I +M F G
Sbjct: 292  DGMSL----DDYLVFMAKEGLEKRLAVLFPDEAVREAKRPEYYARLEFETGTIIKMGFPG 347

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 348  YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVSM 407

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y  VD +
Sbjct: 408  PDFDIDFCQHGRDRVITYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDGI 467

Query: 476  CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP  P   V+++ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 468  AKLIPFKPGKLVTIEEAKKEEPLLTERERNEEEVRQLLELAQRVEGMTRNVGMHAGGVLI 527

Query: 535  GDRPLSQLVPMY-----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSL 586
                L+   P+Y      D  S + V+Q++   +E AGL+KFDFLGL TLT+L   ++ +
Sbjct: 528  APGKLTDFCPLYTQGGQNDGMSGV-VSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYI 586

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
              L       + S IP DD   + +L T  T+ +FQLES GM+  L+  +PD  EDIIAL
Sbjct: 587  RRLDPSKADWNCSHIPLDDGPAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIAL 646

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            V+LYRPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYS
Sbjct: 647  VALYRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYS 706

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM + +  F  GA KNG+S   A +IF+L+ KFA YGFNKSHA
Sbjct: 707  LGGADLLRRAMGKKKPEEMAQHRVMFREGADKNGLSAQQADDIFDLMEKFAGYGFNKSHA 766

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA+++Y TAW+K H+P EF+AA+M+L MD+ +K+K   +D +   I ++PP VN    
Sbjct: 767  AAYALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYEDCKLNKIAVLPPDVNASEY 826

Query: 827  DFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             F   D + I Y L  IKG G      I+ A  ++PF  L DFC RVD +++NRR +E+L
Sbjct: 827  RFAPTDPKTIRYGLGGIKGSGQGAIEDILRAREERPFTDLFDFCERVDRRQVNRRTIEAL 886

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + AGA D    +R QLL S+    + A+  +K  +    ++F    G   D    E    
Sbjct: 887  IRAGAFDSLNDNRAQLLASVPIAMEAAE--QKAESANQVSLF-DLMGDAGDAHRPELLDE 943

Query: 946  ENSSVR--FENEQRVLGFYFSGHPLDVYKPILRKMG---IKGYEESVAT--------IRG 992
               S +   + E++ LG+YFSGH  D Y+  +R+     + G E+ V          +RG
Sbjct: 944  PRWSPKRTLQEEKQALGYYFSGHLFDAYRDEVRRFNKGTLAGLEKEVQGNGGGFGRDVRG 1003

Query: 993  NNIRLAAMVVSKQQKKTRKG 1012
              I  A ++   + + T++G
Sbjct: 1004 KTI--AGVISGMRTQMTQRG 1021


>gi|158319634|ref|YP_001512141.1| DNA polymerase III DnaE [Alkaliphilus oremlandii OhILAs]
 gi|158139833|gb|ABW18145.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs]
          Length = 1164

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/1061 (38%), Positives = 629/1061 (59%), Gaps = 61/1061 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VH+ YSLL+G   +N  ++++      AIAITD  ++F  ++F + A   GI
Sbjct: 2    SNQFVHLHVHTEYSLLDGFTVINKAMERVKEMGMNAIAITDHGSMFGVVDFYKAAKKNGI 61

Query: 68   QPIIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
            +PIIGC++      +  +D  K  NQG         +VLL    EGYQ +I++VS  +L 
Sbjct: 62   KPIIGCEVYTAPRSMADKDPQKDKNQG--------HLVLLAKNEEGYQNIIKMVSNGFL- 112

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR- 181
            +      RI    L E  ++G+I L+   +G I +    +  + A+   L    +F +  
Sbjct: 113  EGFYYKPRIDYDEL-ERHSKGIICLSACLAGDIQQLLLQDQYESAKALALRLNAMFEENS 171

Query: 182  LYVNLQRHRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ LQ H   ++ + +  +++L+    +PLVATN++ ++++ED +AHD+L+ +    +V
Sbjct: 172  FYLELQDHNMAEQKKVNLGLIKLSRETGIPLVATNDAHYINKEDAKAHDILLCIQTGKIV 231

Query: 241  SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
              ++R R   D  YLK+  EM+ IF   PEA+ NTV+IA +C+F    +   LP +   +
Sbjct: 232  EDQERMRFPNDEFYLKSPEEMMKIFDFAPEAISNTVKIAEQCNFDFDFNTIHLPEYHVPQ 291

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              D+ KE+   LR     GL  R            ++   RL+ EL+VI +M +  YFLI
Sbjct: 292  --DVNKEDY--LRKLCFEGLNKRYTS-------VTEELESRLEGELSVIEKMGYVEYFLI 340

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI++AK N IPVGPGRGS AGS+ AY L ITD+DP++++L+FERFLNP+R+SMPD D
Sbjct: 341  VWDFIKYAKDNGIPVGPGRGSAAGSIVAYTLGITDVDPIKYNLIFERFLNPERISMPDID 400

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC +RR+EVI YV+ KYG ++VAQIITFG++ A+AA+RDVGR + MPY++VD++ K I
Sbjct: 401  IDFCYERREEVIDYVKQKYGEDKVAQIITFGTMAARAAIRDVGRVINMPYNEVDKIAKQI 460

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P      +  +A+  +   +     +     L++++++LEG+ RHASTHAAG+VI  +PL
Sbjct: 461  PFAIGMTIE-KALKMNPELKSIYEENEQGRYLIDMARRLEGMPRHASTHAAGVVIAKKPL 519

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
             + VP+Y  V  D   TQF M  +E+ GL+K DFLGL+TLT+++ ++D + +  G+K+DL
Sbjct: 520  KEHVPLY--VHDDNSTTQFTMGTLEELGLLKMDFLGLRTLTVIKDAIDLIEKNHGIKLDL 577

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S   +DD + Y L++   TLG+FQLES+GM Q L+ ++P+C EDIIA +SLYRPGP+D+I
Sbjct: 578  SDSKYDDEKVYDLISKGDTLGLFQLESAGMIQFLKELKPNCFEDIIAGISLYRPGPMDSI 637

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y   KN  EKI  IH  ++P+L  T G ++YQEQ+MQI + L+GYS   +D++RRAMG
Sbjct: 638  PRYIENKNNPEKIKYIHESLEPILNVTYGCMVYQEQIMQIVRDLAGYSYGRSDLVRRAMG 697

Query: 719  KKIKEEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            KK  + M+++++ FI            +G  +NG+ + +A  I++ +  FA+YGFNKSHA
Sbjct: 698  KKKMDVMEQERKNFIYGIVNEKGEVEVAGCIRNGVPEDVANKIYDEMIDFANYGFNKSHA 757

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYAV++Y+TA++KT+Y VEF+AA MT  M N  K+ ++ QD ++ NI+I+PPS+N    
Sbjct: 758  AAYAVLAYETAYLKTYYKVEFMAALMTSVMGNTSKVVQYIQDCKKQNIKILPPSINRSFS 817

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARH---IMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
             F V    I ++L A+K VG     +   I E + D  F +  DFC RV+SK +N+R +E
Sbjct: 818  KFTVEGESIRFALGAVKNVGIGMINNLVQIRETTGD--FSTFLDFCQRVESKDINKRAVE 875

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLE 941
            SL+  GA D  G +R QL+ S + I    Q  ++ +     ++F    E     + +   
Sbjct: 876  SLIKCGAFDNMGGNRAQLMASFEGIMDNIQQEKRRKLEGQIDLFQMNEEMDASMNTVNFP 935

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR---------G 992
                 +  +R   E+ V+GFY SGHPL  Y+  L ++      + +  +          G
Sbjct: 936  DIKDFSEKIRLSMEKEVVGFYISGHPLSEYEKELEQIVSANSAQLIEAMENLAESQLKDG 995

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              I +  M+     K TR    + ++   +     E   FP
Sbjct: 996  QPIIVGGMIAEINSKITRNNQMMAFIVLEDLFGSLECIVFP 1036


>gi|319763344|ref|YP_004127281.1| DNA polymerase iii, alpha subunit [Alicycliphilus denitrificans BC]
 gi|317117905|gb|ADV00394.1| DNA polymerase III, alpha subunit [Alicycliphilus denitrificans BC]
          Length = 1182

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/1004 (40%), Positives = 585/1004 (58%), Gaps = 52/1004 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL++H+ +S+++G   ++  +   A D QPA+A+TD NNLF A++F ++    G++PI
Sbjct: 2   FVHLRLHTEFSVVDGTTRIDEAVKAAAKDGQPALAVTDLNNLFGAVKFYKEGRGKGVKPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G ++ ++        + G  P      +VLLV   +GY  L EL++R +  +  K    
Sbjct: 62  VGAEVCLE-------GDAGAPP----SRMVLLVQNRQGYLNLSELLTRAWTRNVVKNLPL 110

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
               WL E+  EGLI+L G  +GP+ +A        A    L    +F  R Y+ +QR  
Sbjct: 111 CTWDWLAEL-NEGLIVLAGAQAGPVGQALMKGDDDGAAAVALRLAGIFPHRFYIEIQRAG 169

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
           R  D    +  VQLA   +LP+VAT+   F + + YEAH+  + +A   +++ + R  R 
Sbjct: 170 RADDEAHVTTAVQLAARLQLPVVATHPVQFATADGYEAHEARVCIAEGEILANQRRVRRF 229

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
           T + Y K+ +EM ++F+D+P A+ NT+EIA+RC+  L +  P LP F       I    E
Sbjct: 230 TREQYFKSGAEMQALFADVPSAIANTLEIAKRCNLTLVLGKPQLPDFPTPGGMAI----E 285

Query: 309 NELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              R  +  GL+ RL         +      Y +RL+FEL  I +M F GYFLIV DFIQ
Sbjct: 286 EYFRVASYDGLKERLLHLFPDEAERERQRLRYEERLEFELGTILKMGFPGYFLIVGDFIQ 345

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           WAK N  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 346 WAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQA 405

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP-- 483
            RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P  
Sbjct: 406 NRDRVIDYVKEKYGKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGQ 465

Query: 484 ----AHPVSLQAIADDSRFR--------EARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
               A+P   +   D + +         E    +  V  ++E++Q+LEG+ R+   HA G
Sbjct: 466 TYTLAYPPEPKKEGDKNNYALELEPMLYERVRKEEDVRTIIEMAQQLEGMTRNIGMHAGG 525

Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
           ++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + DF+  
Sbjct: 526 VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIARDFIRA 585

Query: 592 RGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
           R    +      +P DD  TY L     T  +FQ ES GM+  L+  +P  +ED+IAL +
Sbjct: 586 RHKGQENFAFENVPLDDAPTYRLFADGMTEAVFQFESRGMQGMLKEARPSRLEDLIALNA 645

Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
           LYRPGP+D I  + NRK+GKE +   HPL++P+L ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 646 LYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLG 705

Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD+LRRAMGKK  EEM + +  F  GA++ GIS+  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 706 GADMLRRAMGKKKPEEMAEHRLIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAAA 765

Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVD 827
           Y++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA + F I   PP +N     
Sbjct: 766 YSLLAYHTGWLKVHYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGITFEPPDINRGNYR 825

Query: 828 FK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK----------PFDSLEDFCSRVDSKK 876
           F+ V D  I Y L A+KG G      I+ A   +          PF SL DFC RVD  +
Sbjct: 826 FEPVTDKVIRYGLGAVKGTGQQAIEAIVAAREGQGVGPQGGTRGPFKSLFDFCVRVDRSR 885

Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY--AQWVEKNRTNKHENIFAHEKGTF 934
           +N+R +E+L+ AGA D    +R  L+ S+D    +  AQ    N+    + +     G+ 
Sbjct: 886 INKRTVEALIKAGAFDALHLNRAALVASIDRAFDFANAQLANANQGGLFDMMGDDAIGSS 945

Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
           + +  L + +      R   E+  +GFY SGH  D  +  +R+ 
Sbjct: 946 TQEPDLVEATPWGIKERLMQEKTAVGFYLSGHLFDEVQQEVRRF 989


>gi|28198096|ref|NP_778410.1| DNA polymerase III subunit alpha [Xylella fastidiosa Temecula1]
 gi|182680724|ref|YP_001828884.1| DNA polymerase III subunit alpha [Xylella fastidiosa M23]
 gi|32129492|sp|Q87EY0|DPO3A_XYLFT RecName: Full=DNA polymerase III subunit alpha
 gi|28056156|gb|AAO28059.1| DNA polymerase III alpha chain [Xylella fastidiosa Temecula1]
 gi|182630834|gb|ACB91610.1| DNA polymerase III, alpha subunit [Xylella fastidiosa M23]
 gi|307579189|gb|ADN63158.1| DNA polymerase III subunit alpha [Xylella fastidiosa subsp.
            fastidiosa GB514]
          Length = 1193

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1054 (39%), Positives = 628/1054 (59%), Gaps = 74/1054 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLF 53
            + SFVHL +H+ +SL +  + +               N+L +      PA+A+TD NNLF
Sbjct: 3    TSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNLF 62

Query: 54   SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
            + ++F + A   GI+PI G  L I   ++         P+     + LL     GY  L 
Sbjct: 63   ALIKFYKAAETVGIKPISGADLLIAEPEH--------PPW----GMTLLCRDHAGYLNLS 110

Query: 114  ELVSRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
            +L+SR +L     +  V +   W+++   + L  L G  S    +      + +AE++L 
Sbjct: 111  QLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIGRHS-LAGQLLAKGRADLAEQQLA 168

Query: 173  TFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             ++ +FGD L++ L R  R  +       +Q+A    +P++A+N+  FL + D+ AH+  
Sbjct: 169  DWQHVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVQSDFLAHEAR 228

Query: 232  MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +A   ++    RPR  +   YL++  EM ++F+D+P+AL+NT  +A+RC+  +++   
Sbjct: 229  VCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFADIPDALDNTRTLAQRCNIEMRLGTY 288

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             LP +     + +    ++ +R ++  GLE RL +  +A G   +DY  RL+FEL+ I +
Sbjct: 289  FLPNYPVPNDETL----DSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTIIK 344

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M FSGYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP
Sbjct: 345  MGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLNP 404

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFDIDFC +RRDEVI YV  KYG ERV+QIIT+G++ AKA +RDVGR L  PY 
Sbjct: 405  ERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYG 464

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFRE---ARL-----ADPSVDRLLEISQKLEGLY 522
             VD + KLIP+     ++L+    +    +   A L     A+  V  LL ++++LE L 
Sbjct: 465  LVDSVAKLIPSTLG--ITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLT 522

Query: 523  RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PL++  P++     + R   PVTQF+   +E+ GL+KFDFLGL+T
Sbjct: 523  RNAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRT 582

Query: 579  LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  + +R  +     VD++ +P DD  TY  +  +  T  +FQ ESSGMR+ L
Sbjct: 583  LTIIDWAVKAINKRHARACIDPVDITALPLDDIPTYKDVFASGNTSAVFQFESSGMRRLL 642

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +  RK+G ++ +   P    +LK+T G+++YQ
Sbjct: 643  KDARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQ 702

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+    A  IF+L
Sbjct: 703  EQVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDL 762

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  +AR  
Sbjct: 763  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNL 822

Query: 813  NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
            N++++ P++N     F+    + I Y L AIKGVG +    I++      P+ SL DFC+
Sbjct: 823  NLKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCT 882

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929
            RV S KLNRR LE+++ AGALD  G +R  ++  L  + K  + + + R +   ++F + 
Sbjct: 883  RVTSAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNA 942

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVA 988
            + GT   ++ L +      +     E+  LG YFSGHP D Y+  ++++ G      ++ 
Sbjct: 943  DPGTPVIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALE 1002

Query: 989  TI-----RGN----------NIRLAAMVVSKQQK 1007
             I     RGN          N  LA +VVS ++K
Sbjct: 1003 RILGSQQRGNGEKRTWQPEVNTILAGLVVSVRRK 1036


>gi|260892340|ref|YP_003238437.1| DNA polymerase III, alpha subunit [Ammonifex degensii KC4]
 gi|260864481|gb|ACX51587.1| DNA polymerase III, alpha subunit [Ammonifex degensii KC4]
          Length = 1139

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1038 (40%), Positives = 606/1038 (58%), Gaps = 36/1038 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSLL+GA  + +++ +     Q A+AITD   ++  ++F +     GI+PI
Sbjct: 3    FVHLHLHTEYSLLDGAARIKDVVKRAKELGQNALAITDHGVMYGVVDFYKACQEVGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +  +    MT++          +VLL    EGY+ LIELVSR +L  +G     
Sbjct: 63   LGCEVYVAPRG---MTDRTPKVDDNPYHLVLLAENEEGYRNLIELVSRAFL--EGFYYKP 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                +L     +GLI L+   +G +         + AE+    ++ +FG D  ++ LQ H
Sbjct: 118  RVDKYLLAQKAKGLIALSACLAGEVAAHLLAGDFKKAEEAAGEYRDIFGKDNFFLELQDH 177

Query: 190  RGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             G    +     +++LA   ++PLVATN+  ++   D E  D+L+ +     V   DR R
Sbjct: 178  -GLPEQKPVNEGLIKLASRLDIPLVATNDVHYVERADAEVQDLLLCIQTGKSVGDPDRLR 236

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  YLK+  EM  +F D P+AL  TVEIA RC   L      LP F   E       
Sbjct: 237  FGSDQFYLKSALEMARLFPDHPDALRATVEIASRCEVKLSFGEYHLPEFPVPE----GHT 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR    AG + R             +  +RL +EL VI RM +  YFLIV D I +
Sbjct: 293  PASYLRELCYAGAKKRYGDPL------PPEVEERLAYELQVIERMGYPPYFLIVWDVIHF 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++N I VGPGRGS AGS+ AY L IT+IDPL++ LLFERFLNP+R+S+PD D DFC + 
Sbjct: 347  ARRNGIMVGPGRGSAAGSLVAYCLGITNIDPLKYGLLFERFLNPERVSLPDIDTDFCFEM 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD+V+ YV  +YG +RVAQI TF  L A+AA+RD GRAL M Y++VDR+ +L+P +P   
Sbjct: 407  RDKVLEYVVRRYGADRVAQIATFAQLSARAAIRDAGRALGMSYAEVDRVARLVPGEPGMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            V+ +A+ +    +E    + SV +LL+++ KLEG+ RHASTHAAG+VI   PL +LVP++
Sbjct: 467  VA-RALEESPELKELYEKEASVKKLLDVAAKLEGIPRHASTHAAGVVITPEPLIRLVPLH 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            R +      TQF  + +E+ GL+K D LGL+TLT+++ +L  + +RGVK+DL  IP DD 
Sbjct: 526  R-MPDGTVATQFTKEGVEELGLLKMDLLGLRTLTVIRDTLRHVNRRGVKLDLEKIPLDDP 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
             T+ LL    T+G+FQLESSGMR  L  +QP C ED+IALV+LYRPGP+ + +V  +  R
Sbjct: 585  ATFELLCRGDTIGVFQLESSGMRALLRSLQPSCFEDLIALVALYRPGPLGSGMVDDFIKR 644

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G   I   HP ++P+L+ET GVI+YQEQVMQIA  L+G+SL EAD+LRRAMGKK  EE
Sbjct: 645  KHGLLPIEYPHPWLEPILRETYGVIVYQEQVMQIASRLAGFSLGEADLLRRAMGKKKPEE 704

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +   + RF+ G+ + G+ + +A  IF+ +  FA YGFNKSH+AAYA+++YQTA++K +YP
Sbjct: 705  LAALRSRFVKGSVERGVDERLAEEIFDRMEYFAGYGFNKSHSAAYALVAYQTAYLKANYP 764

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIK 843
            VE++AA +T   D  EK+  + ++ R+  I+I PP +N    DF    D  I + LAA+K
Sbjct: 765  VEYMAALLTSVRDRTEKVALYVEECRRLGIKIFPPDINESERDFSPTPDGGIRFGLAAVK 824

Query: 844  GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      I++A  +  PF    DFC+RV  + LNR+VLESL  AGA    G++R ++L
Sbjct: 825  NVGEGAVEAILQARREGGPFRDFADFCARVGGRALNRKVLESLAKAGAFASLGHTRKEIL 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS-------VRFENE 955
            +S+D   K A   +  +    +         F     L KF+  N         +R E E
Sbjct: 885  ESIDEGLKIANRAKAKKQQGIQICLFQNMEDFGGGYRL-KFNRPNGEEFPRRELLRMEKE 943

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
              +LG Y SGHPL  Y+ +LR +      +         +++  M+V  ++ +TR+G  +
Sbjct: 944  --LLGLYISGHPLAEYRDLLRLLTDVQVADLAEMEEDAEVKVGGMIVGMKRLRTRRGEPM 1001

Query: 1016 GWVTFSEPAKEYEANFFP 1033
              V   +     EA  FP
Sbjct: 1002 AAVYLEDLTGVVEAVLFP 1019


>gi|91782537|ref|YP_557743.1| DNA polymerase III subunit alpha [Burkholderia xenovorans LB400]
 gi|91686491|gb|ABE29691.1| DNA polymerase III, alpha subunit [Burkholderia xenovorans LB400]
          Length = 1193

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/1028 (40%), Positives = 616/1028 (59%), Gaps = 52/1028 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++++   A D Q A+A+TD  N F  + F ++A   G++
Sbjct: 7    PRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC + I   D+ +  ++          ++LLV    GY  L EL+S+  L +Q +  
Sbjct: 67   PIAGCDVWITNPDDREKPSR----------LLLLVKDRRGYLNLCELLSKASLTNQYRGR 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL+    EGL+ L+G   G I  A    + + A++  L + K+F    Y+ +QR
Sbjct: 117  AEIEAGWLESGLGEGLLALSGAQQGDIGLALAAGNEEAAKRNALHWAKVFPGGFYIEVQR 176

Query: 189  --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                G + Y + Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++   R 
Sbjct: 177  CGQPGGEHYVQ-QAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRS 235

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R TP+ Y + + EM ++F+D+P AL N+VEIA+RC+  L++  P LP F   +   +  
Sbjct: 236  KRFTPEQYFRTQEEMAALFADIPSALTNSVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 293

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L + +  GLE RL Q       +      Y +RL+FE   I +M F GYFLIVAD
Sbjct: 294  --DDYLVHLSKEGLEKRLEQLYPDEAERAAQRATYYERLEFECGTIIKMGFPGYFLIVAD 351

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 352  FINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDF 411

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 412  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 471

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LLE++Q++EGL R+   HA G++I    L+ 
Sbjct: 472  PGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTD 531

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +    K D SL
Sbjct: 532  FCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSL 591

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPGP+D I
Sbjct: 592  AQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLI 651

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 652  PSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 711

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM + +E F  GA+KNG++   A  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 712  KKKAEEMAQHRELFRQGAAKNGLTGEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 771

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGD----- 832
            +K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP VN     F+ V +     
Sbjct: 772  LKAHHPAEFMAANMSLAMDDTDKVKILFEDCLVNKMAVLPPDVNLSAYRFEPVAEPDGKR 831

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  + PF  + DFC+RVD + +NRR +E+L+ AGA 
Sbjct: 832  SRTIRYGLGAIKGSGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALIRAGAF 891

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--SDKITLEKFSVEN-- 947
            D    +R QL+ S+    + A+    N         A + G F   D  +     V+   
Sbjct: 892  DSLHANRAQLIASVSLAMEAAEQASAN---------ALQAGLFDMGDAPSQGHELVDEPE 942

Query: 948  --SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004
                 + + E+  LGFY SGH  D YK  +R+       + +  ++ G +  +A ++ S 
Sbjct: 943  WPEKKKLQEEKAALGFYLSGHLFDAYKDEVRRF----VRQKIGELKEGRDKLVAGVIASL 998

Query: 1005 QQKKTRKG 1012
            + + T++G
Sbjct: 999  RTQMTQRG 1006


>gi|33593326|ref|NP_880970.1| DNA polymerase III subunit alpha [Bordetella pertussis Tohama I]
 gi|33572682|emb|CAE42605.1| DNA polymerase III alpha subunit [Bordetella pertussis Tohama I]
          Length = 1163

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/1007 (40%), Positives = 601/1007 (59%), Gaps = 54/1007 (5%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           +++ +   P FVHL+VHS +S+ +G + +++++ ++A   QPA+A+TD +N+F  ++F +
Sbjct: 1   MSEAVTNPPPFVHLRVHSEFSVSDGIVRISDLIKRVAKLGQPAVALTDLSNIFGLIKFYK 60

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            A  AG++P+ G  + +   D+ +       PF     ++LLV   +GY  L EL++R +
Sbjct: 61  GARGAGVKPVAGSDVWLTNDDDRE------KPF----RLLLLVRNHQGYLNLCELLTRSF 110

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
           L +Q K    +   WLQ  G EGLI+L+G   G + +A    ++  A      + +LF  
Sbjct: 111 LENQYKGRAEVRREWLQ--GQEGLIVLSGARGGDVGQALEAGNAVTALSLARQWGQLFPG 168

Query: 181 RLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             Y+ LQR    G + Y ++  ++LA    LP+VAT+   FL  ++++AH+  + +A   
Sbjct: 169 SYYIELQRAGFDGDETYTQA-AMRLAAEAGLPVVATHPVQFLDRDEFQAHEARVCIAEGE 227

Query: 239 VVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
           +++   R  R T D YL +  EM   F+D+P AL NTVEIARRC+  L +  P LP F  
Sbjct: 228 ILANPRRVRRYTQDQYLLSSEEMARRFADVPSALANTVEIARRCNLTLVLGKPRLPNFPT 287

Query: 298 KE---CDD--IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIA 349
            +    DD  +Q  EE         GLE RL         +      Y +RL +E   I 
Sbjct: 288 PDGVTLDDYLVQLSEE---------GLEKRLQFLFPDEAERNAKRDQYYERLRWECKTII 338

Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
           +M F GYFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLN
Sbjct: 339 QMGFPGYFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLN 398

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
           P+R+SMPDFDIDFCQD R+ VI YV+ KYG E V+QI TFG+L AKA +RD GR L MPY
Sbjct: 399 PERVSMPDFDIDFCQDNRERVIDYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMPY 458

Query: 470 SQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
              D L KLIP +PA P +L+  + D+  F++    +  V  L+++++ LEGL R    H
Sbjct: 459 LFCDALSKLIPFNPADPWTLERTLKDEPAFKDRYEQEEEVRALVDLARPLEGLTRSIGMH 518

Query: 529 AAGIVIGDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           A G++I    L+   P+Y +  + +  V+QF+   +E AGL+KFDFLGL+ LT+L  ++ 
Sbjct: 519 AGGVLIAPGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVR 578

Query: 588 FLAQRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
           F+ Q        D+  +  DD   Y +L    T  +FQLES GM++ L+ ++P   EDII
Sbjct: 579 FVRQFNADKRDFDVMALSLDDQAAYKVLCDANTTAVFQLESRGMKELLKKLRPSTFEDII 638

Query: 645 ALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
           A+++LYRPGP+++ +V  + NRK+G+  +   HP ++  L+ T GVI+YQEQVM I+Q++
Sbjct: 639 AMLALYRPGPLESGMVDDFVNRKHGRAAVDYFHPDLEGTLRSTYGVIVYQEQVMLISQII 698

Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            GYSL  AD+LRRAMGKK  EEM K +E F  GA + G    +AV +F+L+ KFA YGFN
Sbjct: 699 GGYSLGGADLLRRAMGKKKPEEMAKHRELFEQGAREKGHDPDLAVKLFDLMEKFAGYGFN 758

Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           KSH+AAYA+I+YQTAW+K ++P EFLAA+++ +MD+ +K++ F +DA+   ++++PP VN
Sbjct: 759 KSHSAAYALIAYQTAWLKAYHPTEFLAATLSSDMDDTDKVQIFVRDAQDNGVEVLPPDVN 818

Query: 823 TPCVDFK-VGDNR---------IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
                F+ V D           + Y L A+KG G      I+ A  +  PF +L DFC R
Sbjct: 819 ASGYRFEPVADKHTEQGKPPRTMRYGLGAVKGTGQGAVEEILRARQEGGPFANLFDFCRR 878

Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
           V    +NRR +E+L+ AGA D    +R  +L S+    + A+  +  R+    ++F  + 
Sbjct: 879 VSKHAVNRRTIEALIKAGAFDTIEPNRAAMLVSVGTAMEAAE--QAARSANQSSLFGDDS 936

Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
           G       L K +  N       E+  LG+YFSGH  D ++  +R++
Sbjct: 937 GDVVAG-ELTKVAPWNLHTTLTEEKTALGYYFSGHLFDAWRDEVRRI 982


>gi|225875019|ref|YP_002756478.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC
            51196]
 gi|225792178|gb|ACO32268.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC
            51196]
          Length = 1173

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1061 (40%), Positives = 623/1061 (58%), Gaps = 54/1061 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  +  ++  +A+  Q ++AITD  N++ A+ F + A   GI+PI
Sbjct: 4    FTHLHLHTDYSLLDGACDVEKLVGHVASIGQTSVAITDHGNIYGAVHFFEAAKKKGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+L I  +++ +   QG         +++L  + EGY+ L+ + S   L    ++  R
Sbjct: 64   LGCELYICQKEDHRADPQGDD----YNHLLVLAESEEGYRNLVRITSEASLHGFYRKP-R 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            I   +L E    GLI  +G  +G   +    ++ Q A      ++ +FG    ++ +Q  
Sbjct: 119  ISKKYLAEHAA-GLIGFSGCLAGEFCQNLMADNYQAARATAAQYQDIFGRGNFFLEIQ-D 176

Query: 190  RGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +G +  ++  + + +L    ++PLVATN+S +L E+D+ AHDVL+ V  +  +    R +
Sbjct: 177  QGLELEKKIHADMFRLEKDLDIPLVATNDSHYLCEDDHHAHDVLLCVQTAGSIHDPKRFK 236

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-------IEKE 299
               D  Y+K+ +EM  +F   PE +  T++ A RC+  L       P F       I+  
Sbjct: 237  FDSDQFYVKSAAEMERLFPHAPEVVSRTMQFAERCNLKLNKVDNPFPEFAVPPGHTIDSY 296

Query: 300  CDDIQKEEENELRNKAVAGLEVR-LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
             + + +E   +  + A+  L+ R + +  I+      DY  RL+ E+ +I +MKFSGYFL
Sbjct: 297  FEHVCREGFKKRLDTAIRHLQDRGILRSPIS------DYEARLEREIGIIKQMKFSGYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI++AK ++IPVGPGRGS AGS+  Y + ITDIDPL+  LLFERFLNP+R+SMPD 
Sbjct: 351  IVWDFIRYAKDHDIPVGPGRGSAAGSLVGYVMEITDIDPLQNVLLFERFLNPERVSMPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC +RR EVI YV  KYG E+VAQIITF ++ AKAA++DVGRAL MPY  VDR+ K+
Sbjct: 411  DIDFCMNRRGEVIEYVTRKYGREQVAQIITFNTMAAKAAIKDVGRALDMPYGDVDRIAKM 470

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP      +  QA+ D  + +EA   +  +  L++ +++LEGL R A  HAAG+VI  RP
Sbjct: 471  IPATIGVTID-QALTDSPQLQEAYEGNTQIRELIDTAKRLEGLVRGAGVHAAGVVIAPRP 529

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L+ LVP+ R  ++D  VT ++MK +EK GL+K DFLGL TLT++   L  + + RG  VD
Sbjct: 530  LTDLVPLSRS-KNDEIVTAYDMKAVEKMGLLKMDFLGLTTLTVIDDCLKMIRKNRGETVD 588

Query: 598  LSLIPFDDHETYHLLTTKG-TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            ++ +P DD ETY  +  +  T G+FQ ES GMR  L   +P C+ED+ AL +LYRPGPI 
Sbjct: 589  MAKVPLDDQETYERVFHRALTSGVFQFESGGMRDVLRRYKPTCVEDLTALNALYRPGPIQ 648

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
              ++  +  RK G+ K+    P ++ +LKET GVI+YQEQVMQIA +L+GYSL EAD+LR
Sbjct: 649  GGMIDDFIERKWGRRKVEYELPPLETILKETLGVIVYQEQVMQIANVLAGYSLGEADLLR 708

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++RF+SGA +    K   V IF+L+ +FA YGFNKSH+AAYA+++Y
Sbjct: 709  RAMGKKNPEEMAKQRDRFVSGALEREFPKDKIVKIFDLMEQFAGYGFNKSHSAAYALLAY 768

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TAW+KTHYPVEF+AA +T E+   E + K+ Q+ R+  I + PP V     DF      
Sbjct: 769  HTAWLKTHYPVEFMAALLTSEISKPENVVKYIQECREIEIPVEPPDVLFSDADFTPHGKS 828

Query: 835  IYYSLAAIKGVGTTTARHIME-----ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            I + L AIK VG      I++     A+  K F +  +FC +VD + +N+RV+ESL+ AG
Sbjct: 829  IRFGLTAIKNVGRNAIDSILDARGKLAAEGKSFQNFWEFCEKVDLRLMNKRVIESLIKAG 888

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDKITLEKFSV 945
            ALD FG  R QL+ S+D   + AQ  +++       +F         + S    L     
Sbjct: 889  ALDSFG-RRAQLMASVDKAIERAQKAQRDEAAGQSGLFGLFDADAPASASPADDLPNVPD 947

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GI----KGYEESVATIRG-------N 993
               ++R ++E+ VLGF+ SGHPLD Y   LR + GI       E   A   G       N
Sbjct: 948  WEEALRLQSEKEVLGFFVSGHPLDRYAEKLRNLPGIIDTATALEMKPAPPTGRRGQSNEN 1007

Query: 994  NIRLAAMVVS-KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             I +A M+V  K  K  R G      +  +   + +   FP
Sbjct: 1008 EIAIAGMIVGLKVAKSKRSGDLYAQASLEDATGKIDLICFP 1048


>gi|330825578|ref|YP_004388881.1| DNA polymerase III subunit alpha [Alicycliphilus denitrificans
           K601]
 gi|329310950|gb|AEB85365.1| DNA polymerase III, alpha subunit [Alicycliphilus denitrificans
           K601]
          Length = 1182

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/1004 (40%), Positives = 584/1004 (58%), Gaps = 52/1004 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL++H+ +S+++G   ++  +   A D QPA+A+TD NNLF A++F ++    G++PI
Sbjct: 2   FVHLRLHTEFSVVDGTTRIDEAVKAAAKDGQPALAVTDLNNLFGAVKFYKEGRGKGVKPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G ++ ++        + G  P      +VLLV   +GY  L EL++R +  +  K    
Sbjct: 62  VGAEVCLE-------GDAGAPP----SRMVLLVQNRQGYLNLSELLTRAWTRNVVKNLPL 110

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
               WL E+  EGLI+L G  +GP+ +A        A    L    +F  R Y+ +QR  
Sbjct: 111 CTWDWLAEL-NEGLIVLAGAQAGPVGQALMKGDDDGAAAVALRLAGIFPHRFYIEIQRAG 169

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
           R  D    +  VQLA   +LP+VAT+   F + + YEAH+  + +A   +++   R  R 
Sbjct: 170 RADDEAHVTTAVQLAARLQLPVVATHPVQFATADGYEAHEARVCIAEGEILANPRRVRRF 229

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
           T + Y K+ +EM ++F+D+P A+ NT+EIA+RC+  L +  P LP F       I    E
Sbjct: 230 TREQYFKSGAEMQALFADVPSAIANTLEIAKRCNLTLVLGKPQLPDFPTPGGMAI----E 285

Query: 309 NELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              R  +  GL+ RL         +      Y +RL+FEL  I +M F GYFLIV DFIQ
Sbjct: 286 EYFRVASYDGLKERLLHLFPDEAERERQRLRYEERLEFELGTILKMGFPGYFLIVGDFIQ 345

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           WAK N  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 346 WAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQA 405

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP-- 483
            RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P  
Sbjct: 406 NRDRVIDYVKEKYGKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGQ 465

Query: 484 ----AHPVSLQAIADDSRFR--------EARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
               A+P   +   D + +         E    +  V  ++E++Q+LEG+ R+   HA G
Sbjct: 466 TYTLAYPPEPKKEGDKNNYALELEPMLYERVRKEEDVRTIIEMAQQLEGMTRNIGMHAGG 525

Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
           ++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + DF+  
Sbjct: 526 VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIARDFIRA 585

Query: 592 RGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
           R    +      +P DD  TY L     T  +FQ ES GM+  L+  +P  +ED+IAL +
Sbjct: 586 RHKGQENFAFENVPLDDAPTYRLFADGMTEAVFQFESRGMQGMLKEARPSRLEDLIALNA 645

Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
           LYRPGP+D I  + NRK+GKE +   HPL++P+L ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 646 LYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLG 705

Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD+LRRAMGKK  EEM + +  F  GA++ GIS+  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 706 GADMLRRAMGKKKPEEMAEHRLIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAAA 765

Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVD 827
           Y++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA + F I   PP +N     
Sbjct: 766 YSLLAYHTGWLKVHYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGITFEPPDINRGNYR 825

Query: 828 FK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK----------PFDSLEDFCSRVDSKK 876
           F+ V D  I Y L A+KG G      I+ A   +          PF SL DFC RVD  +
Sbjct: 826 FEPVTDKVIRYGLGAVKGTGQQAIEAIVAAREGQGVGPQGGTRGPFKSLFDFCVRVDRSR 885

Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY--AQWVEKNRTNKHENIFAHEKGTF 934
           +N+R +E+L+ AGA D    +R  L+ S+D    +  AQ    N+    + +     G+ 
Sbjct: 886 INKRTVEALIKAGAFDALHLNRAALVASIDRAFDFANAQLANANQGGLFDMMGDDAIGSS 945

Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
           + +  L + +      R   E+  +GFY SGH  D  +  +R+ 
Sbjct: 946 TQEPDLVEATPWGIKERLMQEKTAVGFYLSGHLFDEVQQEVRRF 989


>gi|293604441|ref|ZP_06686848.1| DNA-directed DNA polymerase III alpha subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292817318|gb|EFF76392.1| DNA-directed DNA polymerase III alpha subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 1163

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/1008 (39%), Positives = 605/1008 (60%), Gaps = 56/1008 (5%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           +++ +     FVHL+VHS +S+++G + + +++ ++A   QPA+A+TD +NLF  ++F +
Sbjct: 1   MSEAVTNPTPFVHLRVHSEFSVVDGIVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYK 60

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRM 119
            A  AG++PI GC + +   D+           P+ P  ++LLV   +GY  L EL+S+ 
Sbjct: 61  GARGAGVKPIAGCDVWLSNDDD-----------PSKPFRLLLLVRNHQGYLNLCELLSKA 109

Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
           +L +QGK    I   WLQ  G +GLI L+GG  G + +A    ++  A      +  LF 
Sbjct: 110 FLTNQGKGRAEIRREWLQ--GQQGLIALSGGRMGDVGQALDAGNAVSALALARQWAHLFP 167

Query: 180 DRLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
              Y+ LQR    G + Y ++  ++LA    LP+VAT+   FL E +++AH+  + +A  
Sbjct: 168 GSYYIELQRAGMDGDEAYTQA-AMRLAGEAGLPVVATHPVQFLDEYEFQAHEARVCIAEG 226

Query: 238 TVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
            +++   R  R T + YL +  EM   F+D+P AL NTVEIA+RC+  L +  P LP F 
Sbjct: 227 EILANPRRVRRFTKEQYLLSSEEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFP 286

Query: 297 EKE---CDD--IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVI 348
             +    DD  +Q  EE         GLE R+A        +    + Y +RL +E   I
Sbjct: 287 TPDGVTLDDYLVQLSEE---------GLEKRMAFLFPNEAEREAKREQYYERLRWECKTI 337

Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
            +M F GYFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFL
Sbjct: 338 IQMGFPGYFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFL 397

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
           NP+R+SMPDFDIDFCQD R+ VI YV+ KYG   V+QI TFG+L AKA +RD GR L MP
Sbjct: 398 NPERVSMPDFDIDFCQDNRERVIDYVKEKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMP 457

Query: 469 YSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
           Y   D L KLIP +P  P SL+  + D+  F++    +  V  L+++++ LEGL R+   
Sbjct: 458 YMFCDGLSKLIPFNPMDPWSLERTLKDEPAFKDRYEQEEEVRALVDLAKPLEGLTRNIGM 517

Query: 528 HAAGIVIGDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
           HA G++I    L+   P+Y +  + +  V+QF+   +E AGL+KFDFLGL+ LT+L  ++
Sbjct: 518 HAGGVLIAPGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAV 577

Query: 587 DFLAQRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++ Q        D+  +  DD   Y +L    T  +FQLES GM++ L+ ++P+  EDI
Sbjct: 578 RYVRQFNEDKRDFDVMALELDDPAAYKILCDANTTAVFQLESRGMKELLKKLRPNTFEDI 637

Query: 644 IALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
           IA+++LYRPGP+++ +V  + NRK+G+  +   H  ++  LK T GVI+YQEQVM I+Q+
Sbjct: 638 IAMLALYRPGPLESGMVDDFVNRKHGRAAVDYFHNDLEGTLKSTYGVIVYQEQVMLISQI 697

Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
           + GYSL  AD+LRRAMGKK  EEM K +E F  GA + G    +AV +F+L+ KFA YGF
Sbjct: 698 IGGYSLGGADLLRRAMGKKKPEEMAKHRELFEQGAKEKGHDPDLAVKLFDLMEKFAGYGF 757

Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
           NKSH+AAYA+ISYQTAW+K ++P EFLAA+M+ +MD+ +K++ FC+DA+   ++++PP V
Sbjct: 758 NKSHSAAYALISYQTAWLKAYHPTEFLAATMSSDMDDTDKVQIFCRDAQDNGVEVLPPDV 817

Query: 822 NTPCVDFKVGDNR----------IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
           N     F+   ++          + Y L A+KG G      I+ A  +  PF +L DFC 
Sbjct: 818 NFSGYRFEPVKDKYTEKGKPPRTMRYGLGAVKGTGQGAVEDILRARKEGGPFLNLFDFCR 877

Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
           RV  + +NRR +E+L+ AGA D    +R  +L S+    + A+  +  R+    ++F  +
Sbjct: 878 RVGKQAVNRRTIEALIKAGAFDTIEPNRAAMLASVPTAMEAAE--QAARSANQASLFGDD 935

Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
            G       L K +  +   +   E+  LG+Y+SGH  D ++  +R++
Sbjct: 936 SGDVVAG-ELAKVAPWDLHKKLTEEKSALGYYYSGHLFDAWRDEVRRI 982


>gi|302392623|ref|YP_003828443.1| DNA polymerase III catalytic subunit, DnaE type [Acetohalobium
            arabaticum DSM 5501]
 gi|302204700|gb|ADL13378.1| DNA polymerase III catalytic subunit, DnaE type [Acetohalobium
            arabaticum DSM 5501]
          Length = 1129

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/1041 (39%), Positives = 633/1041 (60%), Gaps = 46/1041 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YSLL+GA  +  ++ + A    PA+AITD  N++ A+EF + A  AGI+P
Sbjct: 3    GFVHLHCHTEYSLLDGAARIGELVTQAADYGMPALAITDHGNMYGAVEFYKAAKDAGIKP 62

Query: 70   IIGCQLDIDMQDNLKMT-NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG ++ +  +       N+  +P+     +VLL    +GY+ L++LVS+ YL +     
Sbjct: 63   IIGSEVYVAPESRFNQKHNRADSPY----HLVLLAKNNQGYRNLLKLVSKGYL-EGFYYK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQ 187
             +I L  L++   EGLI L+G  +G I R       Q  ++ + T++ +FG+   Y+ LQ
Sbjct: 118  PQIDLELLRKY-NEGLICLSGCLAGRIARGLLNEQQQQVKEMISTYQDIFGENDFYLELQ 176

Query: 188  RHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              +G  + +     +++L    ++PLVATN+  +L++ED +AHDVL+ +    +++ +DR
Sbjct: 177  -DQGLRKEKIINHSLIELGEEMDVPLVATNDVHYLNQEDAQAHDVLLCIQTGKLLTTEDR 235

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             +   D  YLK+  EM  IFS++P+A+ENTVEIA+RC+  L      LP +   E    +
Sbjct: 236  MKFPNDEFYLKSGQEMADIFSEVPQAIENTVEIAKRCNVELDFDQTYLPYYDVPE----E 291

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K   + LR   + G   R        G    + ++RLD+EL +I  M +  YFLIV DFI
Sbjct: 292  KNLSSYLRELCLKGARKRY-------GEVTDEVQERLDYELEIINEMGYPAYFLIVWDFI 344

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++AK+  I VGPGRGS AGS+ +Y L ITDIDPL   L+FERFLNP R+SMPD DIDFC 
Sbjct: 345  EYAKEKGIMVGPGRGSAAGSLVSYVLGITDIDPLEHGLIFERFLNPQRVSMPDIDIDFCY 404

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RRDEVI YV  KYG +RVAQIITFG++ A+A +RDVGR L + Y+QVD++ KLIP D  
Sbjct: 405  QRRDEVIDYVTEKYGQDRVAQIITFGTMAARAVVRDVGRVLDLSYAQVDKIAKLIPFDAD 464

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 +A+      ++       +  L++ +QKLEGL RHASTHAAG+VI    L++  P
Sbjct: 465  LD---EALESSQELKDLCQKKDEIKELIDYAQKLEGLPRHASTHAAGVVISKEELTEYTP 521

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            + ++ + ++  TQ+ M  +E  GL+K DFLGL+TLT++  +L+ + + +G+K+DL  IP 
Sbjct: 522  LQQN-KGEV-TTQYPMGDLEAIGLLKMDFLGLRTLTVINNTLEIIERTQGIKLDLDEIPL 579

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD +TY LL T  T G+FQ+ES+  ++ +  ++P   ED+IAL++L RPGP+ + +V  +
Sbjct: 580  DDEQTYQLLQTGNTEGLFQIESNLFQRLIADLKPTRFEDLIALLALGRPGPLGSGMVDDF 639

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R++G+ ++   H  ++ +L+ET GVI+YQEQVM+IA  ++GYSL EAD+LRR MGKK 
Sbjct: 640  IKRRHGEAEVEYPHADLEEILEETYGVILYQEQVMRIANEIAGYSLGEADILRRGMGKKK 699

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E + K +++FI GA   G S+ +A  +F+L+  F  YGFNKSH+AAYA +SY+TA++KT
Sbjct: 700  PELLKKHRQKFIDGALDKGYSEELANELFDLMEYFGGYGFNKSHSAAYAFVSYRTAYLKT 759

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YPVE++AA ++  M N +K+ ++ ++  +  I+++PP VN   V F V  +RI + L A
Sbjct: 760  YYPVEYMAALLSSIMGNSDKVARYIEECNRMGIEVLPPDVNESEVRFTVVGDRIRFGLEA 819

Query: 842  IKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +K VG      I+ A  ++  F+SL DFC +V   K+N+RV+ESL+ AGA D  G  R Q
Sbjct: 820  VKNVGQKAIEEIIRARQEEGAFESLTDFCQKVFLGKVNQRVIESLIKAGAFDSLGAYRSQ 879

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHEN----IFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +L  ++++ + A  ++K + N  ++    + A E G    ++ L + S  +       E+
Sbjct: 880  MLTVIEDLYEQAHKIQKEKGNGQQSFGDFLNADEFGNV--EVKLPEMSEYSHDQLLAMER 937

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NNIRLAAMVVSKQQKKTRKG 1012
              LG Y SGHP+D Y+ +L +       ES+  I+       +R   ++ S  Q  T+ G
Sbjct: 938  EYLGLYISGHPIDKYQDLLAENRF----ESIVAIKDLADKEEVRFGGIINSINQIITKNG 993

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + ++   +   + E   FP
Sbjct: 994  KDMAFLELEDRTGQLEVVVFP 1014


>gi|167618438|ref|ZP_02387069.1| DNA polymerase III subunit alpha [Burkholderia thailandensis Bt4]
          Length = 1113

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1025 (40%), Positives = 616/1025 (60%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN+     P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNRDDRDKPS--RLLLLVKNKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    +GL+ L+G   G I  A    +   A +    + ++F    Y+ LQR
Sbjct: 114  AELDASWLEGELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RLAQ       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSQEGLEKRLAQLYPDGAEREAQRDKYNQRLDFECGTIKKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 529  FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLPPDINQSHYRFEPVAQADGKP 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGAL
Sbjct: 829  SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGAL 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 889  DSLHANRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 946  LQEEKAALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1002 RGKMV 1006


>gi|187929482|ref|YP_001899969.1| DNA polymerase III subunit alpha [Ralstonia pickettii 12J]
 gi|309781742|ref|ZP_07676475.1| DNA polymerase III subunit alpha [Ralstonia sp. 5_7_47FAA]
 gi|187726372|gb|ACD27537.1| DNA polymerase III, alpha subunit [Ralstonia pickettii 12J]
 gi|308919383|gb|EFP65047.1| DNA polymerase III subunit alpha [Ralstonia sp. 5_7_47FAA]
          Length = 1172

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/1039 (39%), Positives = 615/1039 (59%), Gaps = 52/1039 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SP FVHL++HS YS+++G + L++ +   A D   A+A+TD  N F  + F ++A   G+
Sbjct: 3    SPRFVHLRLHSEYSVVDGNVRLDDAVKAAAKDGMGALALTDLANAFGLVRFYKEARGKGV 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+G         ++ +TN  +   PT   ++LLV   +GY  L +L++R +L +Q + 
Sbjct: 63   KPIVGA--------DVWITNHDERDKPT--RLLLLVRDKQGYLNLCQLLARAWLSNQHRG 112

Query: 128  SVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
               I   W  E G E      GL+ L+G  +G I       +  +A K    + ++F   
Sbjct: 113  RAEIAPEWFDEPGVENAPLATGLLALSGAMAGDIGMTLANGNDALARKLATNWSRVFPGA 172

Query: 182  LYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y+ LQR  H G + Y + Q V+LA   +LP+VAT+   F++ +D+ AH+    +A   +
Sbjct: 173  FYIELQRAGHAGTEAYIQ-QAVKLASAMQLPVVATHPVQFMTPDDFTAHEARTCIAEGEL 231

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R R  T + Y K + EM ++F+D+P AL N+V+IA+RC+  L++  P LP F   
Sbjct: 232  LANPRRARRFTTEQYFKTQDEMCALFADIPSALANSVQIAQRCNLKLELGKPKLPLFPTP 291

Query: 299  ECDDIQKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            +   +    ++ L   A  GLE R+       A+ +   A+ Y  RL+FE   I +M F 
Sbjct: 292  DGMSL----DDYLVQLAKEGLEKRMEVLFPDEAVRESKRAE-YYARLEFETGTIIKMGFP 346

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+S
Sbjct: 347  GYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVS 406

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFDIDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD 
Sbjct: 407  MPDFDIDFCQHGRDRVIQYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDG 466

Query: 475  LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            + KLIP  P   V+L+ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++
Sbjct: 467  VAKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVL 526

Query: 534  IGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFL 589
            I    L+   P+Y     D  V +Q++   +E  GL+KFDFLGL TLT+L   ++ +  L
Sbjct: 527  IAPGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRML 586

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                   + S IP  D + + +L T  T+ +FQLES GM+  L+  +PD  EDIIALV+L
Sbjct: 587  DPSKADWNCSHIPLTDKKAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVAL 646

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  
Sbjct: 647  YRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGG 706

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM + +  F +GA+K+G+S   A  IF+L+ KFA YGFNKSHAAAY
Sbjct: 707  ADLLRRAMGKKKAEEMAEHRALFRAGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAY 766

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPSVNTPCVDF 828
            A+++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DAR  N + ++PP +N     F
Sbjct: 767  ALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNGLTVLPPDINASQYRF 826

Query: 829  KVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               D + I Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV 
Sbjct: 827  APTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVR 886

Query: 888  AGALDCFGYSRMQLLQS--LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            AGA D    +R QLL S  L       +    N+ +  + +   +      ++  E    
Sbjct: 887  AGAFDSLNANRAQLLASIGLAMEAAEQKAAAANQVSLFDLMSGDDAEQHRPELVDE--PA 944

Query: 946  ENSSVRFENEQRVLGFYFSGHPLD------------VYKPILRKMGIKGYEESVATIRGN 993
              +  + + E++ LGFY SGH  D                + R++  KG           
Sbjct: 945  WTTKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVTDKGNGGGYGNRDAR 1004

Query: 994  NIRLAAMVVSKQQKKTRKG 1012
            N  +A ++V ++ + T++G
Sbjct: 1005 NKTVAGVIVGQRTQMTQRG 1023


>gi|9105008|gb|AAF83017.1|AE003874_1 DNA polymerase III, alpha chain [Xylella fastidiosa 9a5c]
          Length = 1212

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1054 (39%), Positives = 627/1054 (59%), Gaps = 74/1054 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLF 53
            + SFVHL +H+ +SL +  + +               N+L +      PA+A+TD NNLF
Sbjct: 22   TSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNLF 81

Query: 54   SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
            + ++F + A   GI+PI G  L I   ++        TP+     + LL     GY  L 
Sbjct: 82   ALIKFYKAAETVGIKPISGADLLIAEPEH--------TPW----GMTLLCRDHAGYLNLS 129

Query: 114  ELVSRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
            +L+SR +L     +  V +   W+++   + L  L G  S    + F    + +AE++L 
Sbjct: 130  QLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIGRHS-LAGQLFAKGRADLAEQQLA 187

Query: 173  TFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             ++ +FG+ L++ L R  R  +       +Q+A    +P++A+N+  FL   D+ AH+  
Sbjct: 188  DWQHVFGNGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEAR 247

Query: 232  MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +A   ++    RPR  +   YL++  EM ++F+D+P+AL+NT  +A+RC+  +++   
Sbjct: 248  VCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGTY 307

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             LP +     + +    ++ +R ++  GLE RL +  +A G   +DY  RL+FEL+ I +
Sbjct: 308  FLPNYPVPNDETL----DSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTIIK 363

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M FSGYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+ L ITD+DPL ++LLFERFLNP
Sbjct: 364  MGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWTLLITDLDPLPYNLLFERFLNP 423

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFDIDFC +RRDEVI YV  KYG ERV+QIIT+G++ AKA +RDVGR L  PY 
Sbjct: 424  ERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYG 483

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFRE---ARL-----ADPSVDRLLEISQKLEGLY 522
             VD + KLIPN     ++L+    +    +   A L     A+  V  LL ++++LE L 
Sbjct: 484  LVDSIAKLIPNTLG--ITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLT 541

Query: 523  RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PL++  P++     + R   PVTQF+   +E+ GL+KFDFLGL+T
Sbjct: 542  RNAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRT 601

Query: 579  LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  + +R  +     VD++ +P DD  TY  +  +  T  +FQ ESSGMR+ L
Sbjct: 602  LTIIDWAVKAINKRHARACIDPVDITALPLDDIPTYKDIFASGNTSAVFQFESSGMRRLL 661

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +  RK+G ++ +   P    +LK+T G+++YQ
Sbjct: 662  KDARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQ 721

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+    A  IF+L
Sbjct: 722  EQVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDL 781

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  +AR  
Sbjct: 782  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNL 841

Query: 813  NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
            N++++ P++N     F+    + I Y L AIKGVG +    I++      P+ SL +FC+
Sbjct: 842  NLKVLRPNINHSVYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLNFCT 901

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929
            RV S KLNRR LE+++ AGALD  G +R  ++  L  + K  + + + R +    +F + 
Sbjct: 902  RVASAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNPLFGNA 961

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVA 988
            +  T + ++ L +      +     E+  LG YFSGHP D Y+  ++++ G      ++ 
Sbjct: 962  DPSTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALE 1021

Query: 989  TI-----RGN----------NIRLAAMVVSKQQK 1007
             I     RGN          N  LA +VVS ++K
Sbjct: 1022 RILGSQQRGNGEKRTWHPEVNTILAGLVVSVRRK 1055


>gi|77747494|ref|NP_297497.2| DNA polymerase III subunit alpha [Xylella fastidiosa 9a5c]
 gi|14194684|sp|Q9PGU4|DPO3A_XYLFA RecName: Full=DNA polymerase III subunit alpha
          Length = 1193

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1054 (39%), Positives = 627/1054 (59%), Gaps = 74/1054 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLF 53
            + SFVHL +H+ +SL +  + +               N+L +      PA+A+TD NNLF
Sbjct: 3    TSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNLF 62

Query: 54   SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
            + ++F + A   GI+PI G  L I   ++        TP+     + LL     GY  L 
Sbjct: 63   ALIKFYKAAETVGIKPISGADLLIAEPEH--------TPW----GMTLLCRDHAGYLNLS 110

Query: 114  ELVSRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
            +L+SR +L     +  V +   W+++   + L  L G  S    + F    + +AE++L 
Sbjct: 111  QLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIGRHS-LAGQLFAKGRADLAEQQLA 168

Query: 173  TFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             ++ +FG+ L++ L R  R  +       +Q+A    +P++A+N+  FL   D+ AH+  
Sbjct: 169  DWQHVFGNGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEAR 228

Query: 232  MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +A   ++    RPR  +   YL++  EM ++F+D+P+AL+NT  +A+RC+  +++   
Sbjct: 229  VCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGTY 288

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             LP +     + +    ++ +R ++  GLE RL +  +A G   +DY  RL+FEL+ I +
Sbjct: 289  FLPNYPVPNDETL----DSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTIIK 344

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M FSGYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+ L ITD+DPL ++LLFERFLNP
Sbjct: 345  MGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWTLLITDLDPLPYNLLFERFLNP 404

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFDIDFC +RRDEVI YV  KYG ERV+QIIT+G++ AKA +RDVGR L  PY 
Sbjct: 405  ERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYG 464

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFRE---ARL-----ADPSVDRLLEISQKLEGLY 522
             VD + KLIPN     ++L+    +    +   A L     A+  V  LL ++++LE L 
Sbjct: 465  LVDSIAKLIPNTLG--ITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLT 522

Query: 523  RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PL++  P++     + R   PVTQF+   +E+ GL+KFDFLGL+T
Sbjct: 523  RNAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRT 582

Query: 579  LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  + +R  +     VD++ +P DD  TY  +  +  T  +FQ ESSGMR+ L
Sbjct: 583  LTIIDWAVKAINKRHARACIDPVDITALPLDDIPTYKDIFASGNTSAVFQFESSGMRRLL 642

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +  RK+G ++ +   P    +LK+T G+++YQ
Sbjct: 643  KDARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQ 702

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+    A  IF+L
Sbjct: 703  EQVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDL 762

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  +AR  
Sbjct: 763  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNL 822

Query: 813  NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
            N++++ P++N     F+    + I Y L AIKGVG +    I++      P+ SL +FC+
Sbjct: 823  NLKVLRPNINHSVYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLNFCT 882

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929
            RV S KLNRR LE+++ AGALD  G +R  ++  L  + K  + + + R +    +F + 
Sbjct: 883  RVASAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNPLFGNA 942

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVA 988
            +  T + ++ L +      +     E+  LG YFSGHP D Y+  ++++ G      ++ 
Sbjct: 943  DPSTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALE 1002

Query: 989  TI-----RGN----------NIRLAAMVVSKQQK 1007
             I     RGN          N  LA +VVS ++K
Sbjct: 1003 RILGSQQRGNGEKRTWHPEVNTILAGLVVSVRRK 1036


>gi|332178643|gb|AEE14332.1| DNA polymerase III, alpha subunit [Thermodesulfobium narugense DSM
            14796]
          Length = 1138

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1027 (40%), Positives = 626/1027 (60%), Gaps = 51/1027 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL+GA  L++I+ K   D   A+A+TD  N++ AL+F   A    I+P
Sbjct: 2    SFVHLHVHSEYSLLDGASRLDDIILKAKNDNMQALALTDHGNMYGALKFYSLAKEHEIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128
            +IGC++ I   D  K T         +  ++L+    EGY+ L+ LVS  +L  +G    
Sbjct: 62   LIGCEMYI-TDDMTKQTRANGDLDTYLSHLILIAKDFEGYKNLVRLVSFGFL--KGFYYK 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI L  L E   +GLI+ +    G I +    N    A +   TFK+ FGD  Y+ +Q 
Sbjct: 119  PRIDLKTLFEY-KKGLIVSSACMYGRIPQLILSNKKDQAVELAKTFKEQFGDDFYLEIQD 177

Query: 189  HRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H G    ++    ++ ++    +PL+ATN+S + ++ED E HDVL+ +     V  ++R 
Sbjct: 178  H-GLPEEKKLIPVIINMSQDLNIPLIATNDSHYTNKEDAEFHDVLLCIQTKKTVQDENRM 236

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +   D  Y K   EM  +FS   +A+ENT+ +A +CS  L +    +P+F    C + + 
Sbjct: 237  KFNTDSLYFKTSEEMKELFSYCKDAVENTLIVADKCSLELPIGKVTVPKF---PCPEGKS 293

Query: 306  EEE--NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E E  N L  K   GL  R       KG   ++  +RL +EL++I +  + GYFLIV+D+
Sbjct: 294  EREYLNLLIEK---GLNRRY------KGNITKEIEERLKYELDIIQKTGYEGYFLIVSDY 344

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I +AK+N I VGPGRGS AGS+ AY L ITDIDPL+++LLFERFLNP+R++ PD D+DFC
Sbjct: 345  INYAKENGIQVGPGRGSAAGSLVAYVLGITDIDPLKYNLLFERFLNPERVNPPDIDVDFC 404

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++R +V+ Y+  +YG E VAQI TFG++ A+A +RDVGR L  P S VD+L KLIPN P
Sbjct: 405  IEKRAQVLNYLVKRYGQENVAQIGTFGTMNARAVVRDVGRTLGKPLSIVDKLAKLIPNKP 464

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                +L+   +    ++   ++PS+  L E S KLEGL RH+S HAAG+VI   P+  L+
Sbjct: 465  GSQATLKEAEELQEVKQFLNSNPSLKELWEKSIKLEGLTRHSSVHAAGVVISPFPIYDLI 524

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+ R    D+PVTQ+ M+ +EK+G +K D LGL+ LT++ K+L+ + + RG+KVD+  IP
Sbjct: 525  PLQRPSEGDVPVTQWPMEDVEKSGFLKMDLLGLRNLTVIGKTLELIEKTRGIKVDIEDIP 584

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD + Y LL    TLG+FQLESSGM+Q L+ ++PD  ED+IA+++LYRPGP+++ +V  
Sbjct: 585  LDDPKVYELLERGETLGVFQLESSGMQQLLKEVKPDKFEDLIAILALYRPGPMNSGMVEQ 644

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RK+ KE +V IH  ++P+L ET GV+IYQEQ+MQ+A +L+G+SL EAD+LRRAMGKK
Sbjct: 645  FIRRKHKKEPVVFIHKDVEPILSETYGVMIYQEQIMQLASILAGFSLGEADLLRRAMGKK 704

Query: 721  IKEEMDKQKERFISGASKNG-ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
              E M  QK +F+ GA   G IS+  A  IF+ +AKFA+YGFNKSH+A+YA+I+Y+TAW+
Sbjct: 705  KAEVMAAQKPKFVEGAINKGLISREQAEKIFDDMAKFAEYGFNKSHSASYALITYRTAWL 764

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K +Y  E++AA ++    + +K+ ++ ++A++F ++++ P VN    +F V  N+I + L
Sbjct: 765  KVYYTPEYMAALLSSVSSDTDKVAEYIKEAKKFGVEVLSPDVNESGENFTVIGNKIRFGL 824

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            +AIKGVG      I+    +D  F +L DF  R  SK +N+++ E+L+ AGALD     R
Sbjct: 825  SAIKGVGKAAIDTILANRLSDGNFKNLRDFIYRTSSKSVNKKIYENLIKAGALDNLYKDR 884

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------- 948
            + LL  LD +    +     ++ K +N    E   F++    E+  ++N           
Sbjct: 885  LNLLDQLDEVLALVK-----KSTKTDN----EHSLFNEAFDEEELYIDNDIEIIPKKDFD 935

Query: 949  -SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE-ESVATIRGNNIRLAAMVVSKQQ 1006
             S++   E+ VLG Y SGHPL  YK ++    I  +   S+  +    +++  +V +K+Q
Sbjct: 936  PSLKLAFEKEVLGLYVSGHPLKPYKFLIN--SISNFNISSLNELDTEKVKICGIVFNKKQ 993

Query: 1007 KKTRKGS 1013
               + GS
Sbjct: 994  VFKKDGS 1000


>gi|319944370|ref|ZP_08018644.1| DNA-directed DNA polymerase III alpha subunit [Lautropia mirabilis
            ATCC 51599]
 gi|319742331|gb|EFV94744.1| DNA-directed DNA polymerase III alpha subunit [Lautropia mirabilis
            ATCC 51599]
          Length = 1203

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1054 (39%), Positives = 618/1054 (58%), Gaps = 47/1054 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            + P FVHL++ S YS+++  + L+  +    AD Q A+A++D +NLF  ++F ++A   G
Sbjct: 41   EGPGFVHLRMRSEYSVVDSIVRLDEAVAAAVADGQMALALSDASNLFGWVKFYKQASGKG 100

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +QPI  C  D+       +TN      P    ++L+ +   GY+RL EL+SR +L ++ K
Sbjct: 101  LQPI--CAADV------WITNAENRDRPY--RLLLIAANNAGYRRLCELLSRAWLENEYK 150

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +   WL    T GLI L+G   G + +     +   A +    +   F D  Y+ +
Sbjct: 151  GHAELLPEWLTAETTGGLIALSGAGGGEVGQFLLAGNHARAVEAAQHWAAAFPDAFYLEV 210

Query: 187  QRHRGYDRYRESQ-----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            QR    D   E++       +LA   +LPLVAT+   FL EED+ AH+  + +A   V++
Sbjct: 211  QR----DGTPEAESCTRATARLAVELDLPLVATHPIQFLREEDFRAHEARVCIAEGEVLA 266

Query: 242  QKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R  R  P  Y + R+EM+++F+DLP AL N+VEIARRC+  L++  P LP +   E 
Sbjct: 267  DPKRVRRFQPTQYFRTRAEMMALFADLPAALANSVEIARRCAVTLRLGNPQLPIYPTPEG 326

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
              I    E  L ++A  GL  RL +       +   A +Y  RL  E   I +M F GYF
Sbjct: 327  VSI----EEYLVHQAEDGLAKRLEKLYPDPEVRAQKAPEYEARLKRECETIIKMGFPGYF 382

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK+N +PVGPGRGSGAGS+ A++L ITD+DPL ++LLFERFLNP+R+SMPD
Sbjct: 383  LIVADFIVWAKQNGVPVGPGRGSGAGSLVAFSLGITDLDPLPYALLFERFLNPERVSMPD 442

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQD R +VI YV+ KYG++ V+QI TFG++ +KA +RD GR L MPY+  D+L K
Sbjct: 443  FDIDFCQDNRGKVIEYVRRKYGYDAVSQIATFGTMASKAVIRDAGRVLDMPYNFCDQLSK 502

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP + A P+SL +A+  + +  E    +  V  L  +++ LE + R+   HA G++I  
Sbjct: 503  LIPIEQAKPLSLDKALKAEPQLAERLANEEEVAELFALARPLEDMTRNIGMHAGGVLIAP 562

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
              L+   P+YR   +D  V+Q++   +E  GL+KFDFLGL+ LT++  ++ ++ +R  + 
Sbjct: 563  GKLTDFCPLYRAPGTDSVVSQYDKDDVEAVGLVKFDFLGLRNLTIIDLAVRYVNERRARE 622

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                VDL  + FDD   Y +L    T+ IFQ+ES GM++ L  +QPD  EDIIA+++LYR
Sbjct: 623  GQEPVDLDNLGFDDQAAYQILRDGNTVAIFQVESDGMKKLLRKLQPDRFEDIIAVLALYR 682

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+ + +V  +  RK G++ I   HP +   L+ T GVI+YQEQVMQI+Q+++GY+L  
Sbjct: 683  PGPLGSGMVDDFILRKRGEQAIDYFHPDLKDCLEPTYGVIVYQEQVMQISQIIAGYTLGG 742

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ++ F+ GA+  G    +A  +F+L+ KFA+YGFNKSH AAY
Sbjct: 743  ADLLRRAMGKKKAEEMAKQRKTFMEGAAAKGQDPDLASQLFDLMEKFAEYGFNKSHTAAY 802

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            AV++YQTAW+K HYP EF+AA+++ +MD+ +K++ F +DA+   +++ PP +N     F+
Sbjct: 803  AVVTYQTAWLKAHYPAEFMAATLSSDMDDTDKVQIFVRDAQANQVEVQPPDINASAYRFE 862

Query: 830  VGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                R I Y L  +KGVG +   +++ A  A  PF  L DFC R+D K +NRR +E+LV 
Sbjct: 863  PAAPRAIRYGLGGVKGVGQSAIENVVAAREAGGPFIDLFDFCERIDRKLINRRTIEALVR 922

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSV 945
            AGA D     R +LL ++    + A+   + +      +F  A   GT  +    E    
Sbjct: 923  AGAFDRLDPDRARLLANVPQAMEAAEQKAREQAAGQGGLFDDAFFGGT-DEAPAREWLPA 981

Query: 946  E--NSSVRFENEQRVLGFYFSGHPLDVYKPILR---KMGIKGYEESVATIRGNN-IRLAA 999
            E  +   R   E+  LG++ +GH  D  +  +R   K  I   E+ V    G+  + +A 
Sbjct: 982  ERWDDRQRLLEEKSALGYFLTGHLFDACRDEVRRFVKTRIGDLEKIVGKHFGSTPVTVAG 1041

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +V       TR+G  +  V   + +   E   FP
Sbjct: 1042 IVSGLSTAMTRRGKMV-RVMLDDGSGTEEIAVFP 1074


>gi|299533528|ref|ZP_07046905.1| DNA polymerase III, alpha subunit [Comamonas testosteroni S44]
 gi|298718486|gb|EFI59466.1| DNA polymerase III, alpha subunit [Comamonas testosteroni S44]
          Length = 1177

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1003 (40%), Positives = 583/1003 (58%), Gaps = 53/1003 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL++H+ +S+++G   +N ++   A D Q A+AITD NNLF  ++F ++    G++P+
Sbjct: 2   FVHLRLHTEFSVVDGTTRVNAMIKAAAEDGQVAMAITDFNNLFGGIKFYREGRGKGVKPL 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           +G ++   M + L     G  P    PS I++LV + +GY  + EL++R +  +  +   
Sbjct: 62  LGAEI---MLEGL-----GDAP----PSRIIVLVQSKQGYHNIAELLARGWTRNVVRDQA 109

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
           +    WLQE+G EGLI+L+G  +GP+  A      + A +       +F  R Y+ LQR 
Sbjct: 110 QHKWEWLQELG-EGLIVLSGAQAGPVGIALTRGDEKGAAEIAQRLATMFPHRFYIELQRA 168

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
            R  D       V+LA    LP+VAT+   +   +DYEAH+  + +A   ++    R R 
Sbjct: 169 GRADDESHVLAAVKLASRLNLPVVATHPIQYAKPDDYEAHEARVCIAEGEILGNAKRVRK 228

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            T D Y K  +EM  +F+D+P A+ENTVEIARRCS  L++  P LP F       +    
Sbjct: 229 FTRDQYFKTTAEMEQLFADIPSAIENTVEIARRCSLTLELGNPQLPNFPVPSGMSM---- 284

Query: 308 ENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
           +   R+++  GLE RL      A  +      Y +RL+FEL  I +M F GYFLIV+DFI
Sbjct: 285 DEFFRHESYQGLEERLVHLYPDAAKRDAQRSRYVERLEFELGTIMKMGFPGYFLIVSDFI 344

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           +WAK N  PVGPGRGSGAGS+ AY L +TD+DPL ++LLFERFLNP+R+SMPDFD+DFCQ
Sbjct: 345 KWAKANGCPVGPGRGSGAGSLVAYVLKVTDLDPLEYNLLFERFLNPERVSMPDFDVDFCQ 404

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RD VI YV+++YG + V+QI TFG++ A+AA+RDVGR L M Y+  D + KLIPN P 
Sbjct: 405 QNRDRVIDYVKDRYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPG 464

Query: 485 HPVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
             V+L+              AI ++    E    +  V  L+E++Q LEG+ R+   HA 
Sbjct: 465 LHVTLKYPPNPPKEGDKYTYAIKEEPILAERIEREEDVKTLIEMAQSLEGMTRNIGMHAG 524

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           G+VI    L+   P+Y+   S   V  ++   +E  GL+KFDFLGL TLT+L+ + +F+ 
Sbjct: 525 GVVIAPGRLADFCPLYQQPGSTSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIM 584

Query: 591 QRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
           +R           IP DD+ TY L +   T  +FQ ES GM+Q L+  +P  +ED+IAL 
Sbjct: 585 KRHKGQENFQFENIPLDDYPTYKLFSDGKTEAVFQFESRGMQQMLKEAKPSRLEDLIALN 644

Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
           +LYRPGP+D I  +  RK+G+E +   HPL++ +L ET G+++YQEQVMQ AQ+L GYSL
Sbjct: 645 ALYRPGPMDLIPTFIARKHGQEVVEYPHPLVESVLAETYGIMVYQEQVMQTAQVLGGYSL 704

Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             AD+LRRAMGKK  EEM K +  F  GA+KNG+S+  A  +F+L+ KFA YGFNKSHAA
Sbjct: 705 GGADLLRRAMGKKKVEEMVKHRGIFREGAAKNGLSEEKADEVFDLMEKFAGYGFNKSHAA 764

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
           AY++++Y T W+K HY  EF   +MT+EMDN +K+K   +DA +  I    P VN     
Sbjct: 765 AYSLLAYHTGWLKVHYTAEFYCGNMTVEMDNTDKLKVLYEDALKMGITFEMPDVNRGVYR 824

Query: 828 FK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK----------PFDSLEDFCSRVDSKK 876
           F+ V D  I Y L AIKG G      I+ A   +          PF SL DFC RVD  +
Sbjct: 825 FEPVTDKVIRYGLGAIKGTGQAAIEAIVAARNGEGTGPNGHEKGPFKSLFDFCLRVDRSR 884

Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA--QWVEKNRTNKHENIFAHEKGTF 934
           +N+R +E+L+  GA D    +R  L+ +LD    +A       ++    + +     G+ 
Sbjct: 885 INKRTVEALIKGGAFDTIDMNRASLMATLDTAFGFAATSIANADQGGLFDMMGDDALGSS 944

Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
           + +  +          +   E+  +GFY +GH  D  +  +R+
Sbjct: 945 TAEPPMADVLPWGVKEKLTLEKTAIGFYLTGHLFDEVEAEVRR 987


>gi|264678275|ref|YP_003278182.1| DNA polymerase III subunit alpha [Comamonas testosteroni CNB-2]
 gi|262208788|gb|ACY32886.1| DNA polymerase III, alpha subunit [Comamonas testosteroni CNB-2]
          Length = 1177

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1003 (40%), Positives = 583/1003 (58%), Gaps = 53/1003 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL++H+ +S+++G   +N ++   A D Q A+AITD NNLF  ++F ++    G++P+
Sbjct: 2   FVHLRLHTEFSVVDGTTRVNAMIKAAAEDGQVAMAITDFNNLFGGIKFYREGRGKGVKPL 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           +G ++   M + L     G  P    PS I++LV + +GY  + EL++R +  +  +   
Sbjct: 62  LGAEI---MLEGL-----GDAP----PSRIIVLVQSKQGYHNIAELLARGWTRNVVRDQA 109

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
           +    WLQE+G EGLI+L+G  +GP+  A      + A +       +F  R Y+ LQR 
Sbjct: 110 QHKWEWLQELG-EGLIVLSGAQAGPVGIALTRGDEKGAAEIAQRLATMFPHRFYIELQRA 168

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
            R  D       V+LA    LP+VAT+   +   +DYEAH+  + +A   ++    R R 
Sbjct: 169 GRADDESHVLAAVKLASRLNLPVVATHPIQYAKPDDYEAHEARVCIAEGEILGNAKRVRK 228

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            T D Y K  +EM  +F+D+P A+ENTVEIARRCS  L++  P LP F       +    
Sbjct: 229 FTRDQYFKTAAEMEQLFADIPSAIENTVEIARRCSLTLELGNPQLPNFPVPSGMSM---- 284

Query: 308 ENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
           +   R+++  GLE RL      A  +      Y +RL+FEL  I +M F GYFLIV+DFI
Sbjct: 285 DEFFRHESYQGLEERLVHLYPDAAKRDAQRSRYVERLEFELGTIMKMGFPGYFLIVSDFI 344

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           +WAK N  PVGPGRGSGAGS+ AY L +TD+DPL ++LLFERFLNP+R+SMPDFD+DFCQ
Sbjct: 345 KWAKANGCPVGPGRGSGAGSLVAYVLKVTDLDPLEYNLLFERFLNPERVSMPDFDVDFCQ 404

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RD VI YV+++YG + V+QI TFG++ A+AA+RDVGR L M Y+  D + KLIPN P 
Sbjct: 405 QNRDRVIDYVKDRYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPG 464

Query: 485 HPVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
             V+L+              AI ++    E    +  V  L+E++Q LEG+ R+   HA 
Sbjct: 465 LHVTLKYPPNPPKEGDKYTYAIKEEPILAERIEREEDVKTLIEMAQSLEGMTRNIGMHAG 524

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           G+VI    L+   P+Y+   S   V  ++   +E  GL+KFDFLGL TLT+L+ + +F+ 
Sbjct: 525 GVVIAPGRLADFCPLYQQPGSTSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIM 584

Query: 591 QRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
           +R           IP DD+ TY L +   T  +FQ ES GM+Q L+  +P  +ED+IAL 
Sbjct: 585 KRHKGQENFQFENIPLDDYPTYKLFSDGKTEAVFQFESRGMQQMLKEAKPSRLEDLIALN 644

Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
           +LYRPGP+D I  +  RK+G+E +   HPL++ +L ET G+++YQEQVMQ AQ+L GYSL
Sbjct: 645 ALYRPGPMDLIPTFIARKHGQEVVEYPHPLVESVLAETYGIMVYQEQVMQTAQVLGGYSL 704

Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             AD+LRRAMGKK  EEM K +  F  GA+KNG+S+  A  +F+L+ KFA YGFNKSHAA
Sbjct: 705 GGADLLRRAMGKKKVEEMVKHRGIFREGAAKNGLSEEKADEVFDLMEKFAGYGFNKSHAA 764

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
           AY++++Y T W+K HY  EF   +MT+EMDN +K+K   +DA +  I    P VN     
Sbjct: 765 AYSLLAYHTGWLKVHYTAEFYCGNMTVEMDNTDKLKVLYEDALKMGITFEMPDVNRGVYR 824

Query: 828 FK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK----------PFDSLEDFCSRVDSKK 876
           F+ V D  I Y L AIKG G      I+ A   +          PF SL DFC RVD  +
Sbjct: 825 FEPVTDKVIRYGLGAIKGTGQAAIEAIVAARNGEGTGPNGHEKGPFKSLFDFCLRVDRSR 884

Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA--QWVEKNRTNKHENIFAHEKGTF 934
           +N+R +E+L+  GA D    +R  L+ +LD    +A       ++    + +     G+ 
Sbjct: 885 INKRTVEALIKGGAFDTIDMNRASLMATLDTAFGFAATSIANADQGGLFDMMGDDALGSS 944

Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
           + +  +          +   E+  +GFY +GH  D  +  +R+
Sbjct: 945 TAEPPMADVLPWGVKEKLTLEKTAIGFYLTGHLFDEVEAEVRR 987


>gi|167814912|ref|ZP_02446592.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 91]
          Length = 1107

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ LQR
Sbjct: 114  AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   +  
Sbjct: 233  KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GL+ RL Q       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 529  FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA 
Sbjct: 829  SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 889  DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 946  LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1002 RGKMV 1006


>gi|167918166|ref|ZP_02505257.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei BCC215]
          Length = 1111

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ LQR
Sbjct: 114  AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   +  
Sbjct: 233  KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GL+ RL Q       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 529  FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA 
Sbjct: 829  SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 889  DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 946  LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1002 RGKMV 1006


>gi|157804147|ref|YP_001492696.1| DNA polymerase III subunit alpha [Rickettsia canadensis str. McKiel]
 gi|157785410|gb|ABV73911.1| DNA polymerase III subunit alpha [Rickettsia canadensis str. McKiel]
          Length = 1200

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1107 (37%), Positives = 630/1107 (56%), Gaps = 111/1107 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  I++  + ++  AI + D+ NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKIVELASLNKMSAICLADSGNLFGSLEFALYAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I    N+               I+L+     GY+ L++L S    L   K  
Sbjct: 63   PIHGVILNIQYDINI------------FAQILLIAKDEVGYKNLLKLSS----LTVTKND 106

Query: 129  VRIC--LSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             +IC  +++   +   EGLI L   + G + +     + + A       +++  DR Y  
Sbjct: 107  RKICDHINFEDLVKYQEGLIALCCYTDGIVGKCLLARNEEQAILFARKLQEILADRFYFE 166

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            + RH    +++ E   +++A    +PLVATN  LF  +  + AHDVL+ ++        D
Sbjct: 167  IMRHDLPEEQFIEDHYIKIAAELAIPLVATNKVLFSEKSMHYAHDVLLCISAGVTKEYPD 226

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R  V+ + Y K+  EM+ +FSDLP A+ENTV +  RC F    + P+LP F  K+     
Sbjct: 227  RKTVSENCYFKSPREMIELFSDLPAAIENTVNLRERCYFAAHANPPMLPNFATKDIS--- 283

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYF 357
              E + +R +A  GL  RLA    ++    +       +Y  RL++EL++I  M F+GYF
Sbjct: 284  --ETDLIRKEATEGLLARLAIKFKSENISLENQEELKTEYLSRLNYELDIICNMNFAGYF 341

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV+DFI+W+K+  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPD
Sbjct: 342  LIVSDFIKWSKQEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPD 401

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D + +
Sbjct: 402  FDIDFCQERREEVINYVRSKYGYNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYITE 461

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHAST 527
            L+P    +PV+L QA+ +      A   +           +  +L+ S  LEGL+RH+ST
Sbjct: 462  LVPFSAVNPVTLEQAMHEVPELANAAKGNGLYNLEGEAELIKLVLDTSLILEGLHRHSST 521

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HAAGIVI    L  +VP+Y+D  SD+ +  ++MK+ E AGLIKFDFLGL+TLT++     
Sbjct: 522  HAAGIVIAGTDLVDIVPVYKDANSDMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKK 581

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
             L +RG+ VDL+ + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL 
Sbjct: 582  LLKERGIDVDLNNMTFDDNKTYQMLCQGKGVGVFQFESVGMKDALRRLKPDSIHDLIALG 641

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +LYRPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L
Sbjct: 642  ALYRPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTL 701

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKKIK+EM++Q+E F+ GA  N IS + A +IF  +AKFA YGFNK+HAA
Sbjct: 702  GAADLLRRAMGKKIKKEMEEQEEIFVKGAVANNISASQAKSIFATVAKFAGYGFNKAHAA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ------------ 815
            AY VISYQTA++K +YP EFL A + LE++N +KI  F Q+A+   I+            
Sbjct: 762  AYGVISYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDSGIKIIAPNINISEGY 821

Query: 816  -----IMPPSVNT---------------------PCVDFKVGDNR--------------- 834
                 ++P +V                          D+  G+++               
Sbjct: 822  FIVKSVIPQAVTCHSHEVLCHTRVGVDPEKISEMKMDDYFRGNDKEGTENDIKSCEYDKE 881

Query: 835  ---IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I ++L AIKGV     + +  E  A  PF S+ DF  R+  K +N ++LE+L+ +G 
Sbjct: 882  VSAIIFALGAIKGVTPNFGKLVTDERKARGPFKSITDFIERLPPKSINSKLLENLIKSGC 941

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R+QL  S+  +  YA    K + +   ++   +  + S  I ++    + +++
Sbjct: 942  FDELHDNRLQLFLSIPKLLSYATSYHKEQASNQFSLI--KVSSLSPTILIDSNYADKNTL 999

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-----SVATIRGNNIRLAAMVVSKQ 1005
             F  E   +G + S HPL  Y+ I  ++ I    +        T R N   LA ++  K 
Sbjct: 1000 AF-YEFEAMGLFISNHPLTQYQEIFSRLNILNTADLHNKLPYGTTRVN---LAGVIQKKD 1055

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + + +G R   +  S+P   +E + F
Sbjct: 1056 SRMSVRG-RFVTLVLSDPENIFELSIF 1081


>gi|167844904|ref|ZP_02470412.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei B7210]
          Length = 1109

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ LQR
Sbjct: 114  AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   +  
Sbjct: 233  KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GL+ RL Q       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 529  FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA 
Sbjct: 829  SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 889  DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 946  LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1002 RGKMV 1006


>gi|51473946|ref|YP_067703.1| DNA polymerase III subunit alpha [Rickettsia typhi str. Wilmington]
 gi|81826280|sp|Q68VX1|DPO3A_RICTY RecName: Full=DNA polymerase III subunit alpha
 gi|51460258|gb|AAU04221.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
            Wilmington]
          Length = 1180

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1081 (38%), Positives = 623/1081 (57%), Gaps = 84/1081 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+  SSYS LE AL++  +++     + PA+ ++D  NLF +LEF+  A    +QPI
Sbjct: 5    FIHLRTQSSYSFLESALTIEKVVELALLHKMPALCLSDRGNLFGSLEFALYAVKKKLQPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L+I    N+               I+L+     GY+ L++L S  +  +  K    
Sbjct: 65   HGVILNIQYDINV------------FAQILLIAKDETGYKNLLKLSSLTFTKNDRKICDH 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L +   EGLI L   + G + +       + A       + + GDR Y  + RH 
Sbjct: 113  INFEDLIKY-QEGLIALCCYTDGIVGKCLLARKQEHAIMFARRLQAILGDRFYFEIMRHD 171

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +++ E+  +Q+A    +P+VATN  LF  +  + AHDVL+ ++        DR  V+
Sbjct: 172  LPEEQFIENSYIQIASELSIPIVATNKVLFSEKSMHYAHDVLLCISEGVTKEYPDRKTVS 231

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + Y K+ +EM  +FSDLP A++NTV +  RC F    + P+LP F      DI   E  
Sbjct: 232  ENCYFKSPAEMKKLFSDLPNAIQNTVNLRERCYFAAHPNPPMLPNF---STQDIS--ETY 286

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIVAD 362
             +R  A  GL  RL     A+    +       +Y  RL++EL++I  M F+GYFLIV+D
Sbjct: 287  LIRKYAKEGLLARLVTKFKAENISREHQEKLKTEYFTRLNYELDIICNMNFAGYFLIVSD 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+KK+ I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDIDF
Sbjct: 347  FIKWSKKHGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDIDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ+RR+EVI YV +KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P  
Sbjct: 407  CQERREEVINYVCSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKCADYLTELVPFS 466

Query: 483  PAHPVSL-QAIADDSRFREARLA--------DPSVDRL-LEISQKLEGLYRHASTHAAGI 532
              +PVSL QAI +      A           D  + +L L+ S  LEGL+RH+STHAAGI
Sbjct: 467  AVNPVSLEQAIREVPELANAAKGKGLYNLEGDAELIKLVLDTSLILEGLHRHSSTHAAGI 526

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI    L  +VP+Y+D  SD+ +  ++MK+ E AGLIKFDFLGL+TLT++      L ++
Sbjct: 527  VIAGTDLVDIVPVYKDANSDMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITNCKKLLKEQ 586

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G+++D   + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LYRP
Sbjct: 587  GIEIDFDDMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALYRP 646

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  AD+
Sbjct: 647  GPMENIPTYIACKHKLQQPDYLHKLLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADL 706

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAAAY VI
Sbjct: 707  LRRAMGKKIKKEMEEQEEIFVKGAIANNISQSQAKSIFATVAKFAGYGFNKAHAAAYGVI 766

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-- 830
            SYQTA++K +YP EFL A + LE++N +KI  F Q+A+   I+I+ P++N     F V  
Sbjct: 767  SYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSVKS 826

Query: 831  ---------------------------------GDNRIYYSLAAIKGVGTTTARHIM-EA 856
                                              ++ I ++L AIKGV     + +  E 
Sbjct: 827  SDTVITHNTKPLIPRLNNEIDIKDTAVKSLYYKDESTIIFALGAIKGVTPNFGKLVTDER 886

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA-QWV 915
             A   F S+ DF  R+  K +N ++LE+L+ AG  D    +R+QL  S+  +  Y+  + 
Sbjct: 887  KARGAFKSITDFIERLPPKSINSKLLENLIKAGCFDELHDNRLQLFLSVPKLIAYSTSYH 946

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            ++  +N+   I   +  + S  I +     + +++ F  E   +G + S HPL  Y+ I 
Sbjct: 947  QEQESNQFSLI---KVSSLSPTILVSSNYADKNTLAFY-EFESMGLFISNHPLTEYQEIF 1002

Query: 976  RKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVT--FSEPAKEYEANF 1031
             ++ I    +    +    N + LA ++   Q+K +R  +R  +VT   S+P   +E   
Sbjct: 1003 SRLNILNTRDLYNKLPNGTNQVTLAGVI---QKKDSRMSARGRFVTLVLSDPENIFELTI 1059

Query: 1032 F 1032
            F
Sbjct: 1060 F 1060


>gi|169831212|ref|YP_001717194.1| DNA polymerase III, alpha subunit [Candidatus Desulforudis
            audaxviator MP104C]
 gi|169638056|gb|ACA59562.1| DNA polymerase III, alpha subunit [Candidatus Desulforudis
            audaxviator MP104C]
          Length = 1075

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1053 (39%), Positives = 610/1053 (57%), Gaps = 65/1053 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YSLL+GA  + +++ + A    PA+AITD   +F  +EF +    AG++P+
Sbjct: 4    FVHLHTHTEYSLLDGAARIKDLVRRAAEFGMPALAITDHGTMFGVVEFYKACRNAGVKPV 63

Query: 71   IGCQLDI------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            IGC++ +      D Q  +            +  +VLL     GY+ L+ LVS +   + 
Sbjct: 64   IGCEVYVAPRTRHDRQSGID---------DKLAHLVLLAENERGYRNLLRLVS-LSFTEG 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L     EGLI L+   +G I           A +    ++ LFG   Y+
Sbjct: 114  FYYKPRIDREILA-THREGLIALSACLAGEIPELILAGKPDRALETAAEYRDLFGKNFYL 172

Query: 185  NLQRH---------RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             LQ H         RG        +V +     + LVATN+  ++  E  E  D+L+ + 
Sbjct: 173  ELQDHGLPGQSVVNRG--------LVDIGKRLGIELVATNDVHYVEREQAENQDILLCIQ 224

Query: 236  HSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                V    R R   D  Y K+  EM  +F++LP AL NT  IA RC+  L      LP 
Sbjct: 225  TGKTVHDAGRLRFEGDQFYFKSGGEMARLFAELPAALANTRLIAERCNLTLDFETLHLPE 284

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMK 352
            +         +   N   +  +A     L    +A+ Y   + D R+RLD+EL VIA MK
Sbjct: 285  Y---------RVPPNYDADTYLA----ELCHQGLARRYSPVSDDIRRRLDYELRVIAEMK 331

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            +S YFLIV DFI++A++  I VGPGRGS AGS+ AY+L IT+IDPL + LLFERFLNP+R
Sbjct: 332  YSSYFLIVWDFIRFAREKGILVGPGRGSAAGSLVAYSLGITNIDPLAYGLLFERFLNPER 391

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +S+PD D DFC +RR EVI YV  KYG + VAQIITFG++ A+AA+RDVGRAL +PY++V
Sbjct: 392  ISLPDIDSDFCFERRGEVIDYVFEKYGRDCVAQIITFGTMAARAAVRDVGRALGLPYAEV 451

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            DR+ KLIP +P   +  +A+       E    D +V ++LE ++ LEG+ RHAS HAAG+
Sbjct: 452  DRIAKLIPGEPGMSIE-KALERSPELAELYERDENVRKVLEAARALEGMPRHASIHAAGV 510

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
            VI    L+  VP+YR     +  TQF+M+ IE+ GL+K D LGL+TLT++  +++ + + 
Sbjct: 511  VIAKEKLTNYVPLYR-TSDGVVATQFSMEAIEELGLLKMDLLGLRTLTVIGDTVELIRRH 569

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            RG K+++  IP DD  TY LL    T G+FQLESSGMR  L  ++P+  ED+IALV+LYR
Sbjct: 570  RGQKLEMETIPLDDPATYDLLGRGDTAGVFQLESSGMRSILRELRPEVFEDVIALVALYR 629

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+ + +V  +  RK+GK ++  +HP + P+LK+T GVI+YQEQVM+IA  L+G+SL E
Sbjct: 630  PGPLGSRMVEDFIKRKHGKTEVQYLHPKLRPILKDTYGVILYQEQVMRIASDLAGFSLGE 689

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  E +   +++F+ GA+ +G+   +A  IF+L+A FA YGFNKSH+AAY
Sbjct: 690  ADLLRRAMGKKKPEIIAGLRDQFLEGATAHGVDPAVAGQIFDLMAYFAGYGFNKSHSAAY 749

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+I+YQTA++K +YP+E++AA +T   D+ EK+  + ++ R+  I+++PP VN    DF 
Sbjct: 750  ALIAYQTAYLKANYPIEYMAALLTSVRDSPEKVSSYVEECRRLGIEVLPPDVNESRKDFT 809

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V  ++I + LA ++ VG      ++E    + PF SL DFCSR+D K +N+R++ESL+ A
Sbjct: 810  VVGDKIRFGLAGVRNVGEAAVNAVIETRERNGPFRSLPDFCSRLDGKVVNKRMVESLIRA 869

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS--VE 946
            GA    G+ R QLL  +D    ++Q ++K + +   ++F  + G F  + T       V 
Sbjct: 870  GAFSSLGFRRTQLLAVMDEALSFSQRLQKEKESGQLSLFG-DWGDFGGEGTAAAAPEIVV 928

Query: 947  NSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                 FE       E+ +LG Y SGHPL  +K  LR++      E      G  + L  +
Sbjct: 929  PHLAEFERHEILAMEKEMLGLYLSGHPLQEFKDTLRRLTTVNAVEIPELNPGQQVILGGL 988

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            VV  +   TRKG  + ++   +     E   FP
Sbjct: 989  VVGLKTITTRKGEPMCFLNLEDLTSRAEIVIFP 1021


>gi|83720422|ref|YP_441538.1| DNA polymerase III subunit alpha [Burkholderia thailandensis E264]
 gi|83654247|gb|ABC38310.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia thailandensis
            E264]
          Length = 1278

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1025 (40%), Positives = 616/1025 (60%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 108  PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 167

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN+     P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 168  PIAGC--------DVWITNRDDRDKPS--RLLLLVKNKRGYLNLCELLSKAWLTNQYRGR 217

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    +GL+ L+G   G I  A    +   A +    + ++F    Y+ LQR
Sbjct: 218  AELDASWLEGELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGFYLELQR 277

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R 
Sbjct: 278  YGQPGAEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 336

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 337  KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 394

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RLAQ       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 395  --DDYLVQLSQEGLEKRLAQLYPDEAEREAQRDKYNQRLDFECGTIKKMGFPGYFLIVAD 452

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 453  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 512

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 513  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 572

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 573  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 632

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 633  FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 692

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 693  AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 752

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 753  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 812

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 813  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 872

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+     D + 
Sbjct: 873  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLPPDINQSHYRFEPVAQADGKP 932

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGAL
Sbjct: 933  SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGAL 992

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 993  DSLHANRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 1049

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 1050 LQEEKAALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1105

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1106 RGKMV 1110


>gi|167580315|ref|ZP_02373189.1| DNA polymerase III subunit alpha [Burkholderia thailandensis TXDOH]
          Length = 1094

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/1025 (40%), Positives = 616/1025 (60%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN+     P+   ++LLV    GY  L +L+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNRDDRDKPS--RLLLLVKNKRGYLNLCKLLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    +GL+ L+G   G I  A    +   A +    + ++F    Y+ LQR
Sbjct: 114  AELDASWLEGELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RLAQ       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSQEGLEKRLAQLYPDEAEREAQRDKYNQRLDFECGTIKKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 529  FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLPPDINQSHYRFEPVAQADGKP 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGAL
Sbjct: 829  SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGAL 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 889  DSLHANRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 946  LQEEKAALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1002 RGKMV 1006


>gi|167718737|ref|ZP_02401973.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei DM98]
          Length = 1103

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ LQR
Sbjct: 114  AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   +  
Sbjct: 233  KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GL+ RL Q       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 529  FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA 
Sbjct: 829  SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 889  DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 946  LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1002 RGKMV 1006


>gi|167893446|ref|ZP_02480848.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 7894]
          Length = 1105

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ LQR
Sbjct: 114  AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGGEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   +  
Sbjct: 233  KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GL+ RL Q       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 529  FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA 
Sbjct: 829  SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 889  DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 946  LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1002 RGKMV 1006


>gi|167823354|ref|ZP_02454825.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 9]
          Length = 1102

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ LQR
Sbjct: 114  AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGGEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   +  
Sbjct: 233  KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GL+ RL Q       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 529  FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA 
Sbjct: 829  SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 889  DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 946  LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1002 RGKMV 1006


>gi|257139773|ref|ZP_05588035.1| DNA polymerase III subunit alpha [Burkholderia thailandensis E264]
          Length = 1174

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1025 (40%), Positives = 616/1025 (60%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN+     P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNRDDRDKPS--RLLLLVKNKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    +GL+ L+G   G I  A    +   A +    + ++F    Y+ LQR
Sbjct: 114  AELDASWLEGELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGFYLELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RLAQ       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSQEGLEKRLAQLYPDEAEREAQRDKYNQRLDFECGTIKKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 529  FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLPPDINQSHYRFEPVAQADGKP 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGAL
Sbjct: 829  SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGAL 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 889  DSLHANRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 946  LQEEKAALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1002 RGKMV 1006


>gi|171057667|ref|YP_001790016.1| DNA polymerase III subunit alpha [Leptothrix cholodnii SP-6]
 gi|170775112|gb|ACB33251.1| DNA polymerase III, alpha subunit [Leptothrix cholodnii SP-6]
          Length = 1188

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/1000 (41%), Positives = 595/1000 (59%), Gaps = 50/1000 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFVHL+ H+ YS+++G L ++ I+   A D QPA+AITD  NLF A++F ++A   G++P
Sbjct: 2   SFVHLRTHTEYSVVDGTLRIDEIVKTAAKDGQPALAITDLANLFGAIKFYKEANKRGVKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIG  + ++ +    +   G+    T   ++LLV    GY  L E++SR ++ +  +   
Sbjct: 62  IIGADIWLEPEG---IGAAGEVRPAT--RLLLLVQNEPGYLNLCEILSRAWVQNVQRNQA 116

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            +   WL E+   GLI L+GG  G + ++     +  A +       +F  R Y+ +QR 
Sbjct: 117 WVKWEWLDEL-NGGLIALSGGLMGCVGQSLAQGDTVRAAELARKLAAIFPRRFYLEVQRA 175

Query: 190 R--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              G+D    +  V LA   +LP+VAT+   +L+ +D++AH+  + VA    ++   RPR
Sbjct: 176 GLPGHDALVLA-TVPLAAQLQLPVVATHPIQYLAPDDFDAHEARVCVAEGETIANPKRPR 234

Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE-CDDIQK 305
               D + K ++EM ++F+D+P AL NT+EIARRCS  L +  P LP F      D    
Sbjct: 235 RFGRDQHFKTQAEMEALFADVPTALANTLEIARRCSLRLVLGKPQLPNFPTPTLADGSSM 294

Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             E+  R  +  GLE RLA        +      Y +RL+FEL  I +M F GYFLIV+D
Sbjct: 295 PMEDYFRQLSYEGLEERLALLYPKPEKRDAERARYLERLEFELTTILKMGFPGYFLIVSD 354

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           FI+WAK N  PVGPGRGSGAGS+ AY L+ITD+DPL ++LLFERFLNP+R+SMPDFDIDF
Sbjct: 355 FIRWAKANGCPVGPGRGSGAGSLVAYVLSITDLDPLHYNLLFERFLNPERVSMPDFDIDF 414

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           CQ  RD VI YV+++YG   V+QI TFG++ AKAALRD+GR L M Y  VD + KLIP  
Sbjct: 415 CQGNRDRVIDYVKDRYGRPAVSQIATFGTMAAKAALRDIGRVLGMGYGHVDSIAKLIPAP 474

Query: 483 PAHPVSLQAIADDSRFRE-----ARLADPS----------VDRLLEISQKLEGLYRHAST 527
           P   V+L  + + +  R+     ARL  P           V  LL ++ ++EG+ R+   
Sbjct: 475 PGKSVTLARVPEKAEDRDGGVIYARLEAPELEEREKNEEEVAELLSLAMRVEGMVRNIGM 534

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           HA G++I    ++   P+Y+   SD  V+Q++   +E  GL+KFDFLGL TLT+L+ + +
Sbjct: 535 HAGGVLIAPGKITDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILELAKE 594

Query: 588 FLAQRGV-KVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
           F+  R   + D +   IP DD   Y L +   T  +FQ ES GM++ L+  +P  +ED+I
Sbjct: 595 FIVARHENRKDFAFETIPLDDAAVYKLFSDGLTEAVFQFESGGMQRMLKDAKPSRLEDLI 654

Query: 645 ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
           AL +LYRPGP+D I  +  RK+GKE +   HP+++ +L ET G+++YQEQVMQ AQ+L G
Sbjct: 655 ALNALYRPGPMDLIPSFVARKHGKEPVEYPHPMVEWVLSETYGIMVYQEQVMQTAQVLGG 714

Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
           YSL  AD+LRRAMGKK  EEM + +  F  GA+ N IS+  A  IF+L+ KFA YGFNKS
Sbjct: 715 YSLGGADMLRRAMGKKKAEEMAEHRAIFRKGAAGNNISQDKADEIFDLMEKFAGYGFNKS 774

Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
           HAAAY++++Y TAW+K H+  EF AA+MT+E+D+ +K++   QDA +F +Q   P VN  
Sbjct: 775 HAAAYSLLAYHTAWIKVHHTAEFFAANMTIELDDTDKLRVLRQDALKFGVQFESPDVNVG 834

Query: 825 CVDF-----KVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLN 878
              F     K G+  I Y L AIKG G      I+ A  +  PF S+ DFC+RVD K +N
Sbjct: 835 VYRFEPAPGKAGNKLIRYGLGAIKGTGQGAIEAIIAARNEGGPFRSIFDFCARVDRKSIN 894

Query: 879 RRVLESLVFAGALDCFGY----SRMQLLQSLDNIQKYA--QWVEKNRTNKHENIFAHEKG 932
           +RV+E+LV AGA D         R +LL S+    +YA  Q    +++   +     + G
Sbjct: 895 KRVIEALVKAGAFDKLHPKGLDGRAELLASVGLALEYAGTQAAHADQSGLFDFGGGDDHG 954

Query: 933 TFS---DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
           + +   D +  E + V+    R  +E+  +G++ SGH  D
Sbjct: 955 SSTREPDYVAAETWDVKQ---RLSHEKIAIGYFLSGHLFD 991


>gi|167901900|ref|ZP_02489105.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei NCTC
            13177]
 gi|167910136|ref|ZP_02497227.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 112]
          Length = 1104

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ LQR
Sbjct: 114  AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   +  
Sbjct: 233  KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GL+ RL Q       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 529  FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA 
Sbjct: 829  SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 889  DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 946  LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1002 RGKMV 1006


>gi|225180853|ref|ZP_03734301.1| DNA polymerase III, alpha subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225168334|gb|EEG77137.1| DNA polymerase III, alpha subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 1144

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1046 (39%), Positives = 614/1046 (58%), Gaps = 44/1046 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S +FVHL VH+ YSLL+GA  + N + + A    PA+AITD   ++  ++F + A  AGI
Sbjct: 3    SSNFVHLHVHTEYSLLDGASKIKNTVARAAELDMPALAITDHGVMYGVIDFYKAAKDAGI 62

Query: 68   QPIIGCQLDIDMQ-----DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
            +P+IGC++ +  +     D+ + + Q          +VLL     GY  L+ELVSR +  
Sbjct: 63   KPVIGCEVYVAPRTRHDRDSRRDSKQHH--------LVLLAQDQTGYANLMELVSRGF-- 112

Query: 123  DQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180
             +G     R+    LQ    +GL +L+   +G I  A      + A K +  +K+ FG +
Sbjct: 113  SEGFYYKPRVDHELLQRY-NKGLTVLSACLAGEIPVALLEGRQEDARKLVSFYKETFGSE 171

Query: 181  RLYVNLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
              ++ LQ H G    +E    ++ LA   + P+V +N+  +   ED  AHD L+ +    
Sbjct: 172  NFFLELQDH-GLQEQKELSPLLIDLAKDTQTPMVVSNDLHYTHREDAHAHDALLCIQTGK 230

Query: 239  VVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             +  ++R R  T + YLK   EM S++ DLPE L+NTV IA  C+         LP +  
Sbjct: 231  TLDDENRMRFSTEEFYLKTAEEMGSLYPDLPELLDNTVHIAENCNVDFDFSTTYLPGYEV 290

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                D    E + LR   V G + R  +       H Q   +RLD+EL+VIA+M +  YF
Sbjct: 291  PPAHD----ERSYLRELCVQGTKERYGEELPP---HVQ---ERLDYELSVIAQMGYDSYF 340

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LI  DF+ +A +N I VGPGRGS AGS+ AYAL IT+IDPL++ LLFERFLNP+R++MPD
Sbjct: 341  LITWDFVNYAHENGILVGPGRGSAAGSLVAYALGITNIDPLKYGLLFERFLNPERVTMPD 400

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             DIDFC + R++VI YV  KYG E VAQIITFG++ A+AA+RDVGR L +PY+ VDR+ K
Sbjct: 401  IDIDFCYENREKVIDYVVEKYGEECVAQIITFGTMAARAAVRDVGRVLNVPYADVDRIAK 460

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            LIP +    ++   +      +E    D  + +LL++S  +EGL RHASTHAAG+VI   
Sbjct: 461  LIPAELNISIA-DGLEKSPDLKELYDKDEKIRQLLDLSMAVEGLPRHASTHAAGVVISKD 519

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKV 596
            PL   VP+ +    D  VTQF M  +E+ GL+K DFLGL+TLT++ +++  + +  GV+V
Sbjct: 520  PLVNYVPLQK-AGEDGMVTQFPMGTLEELGLLKMDFLGLRTLTIMGEAVRLIKKSTGVEV 578

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL+ +P DD  T+H+L+   T GIFQLES GMR  L  M+PD  EDIIA+V+LYRPGP++
Sbjct: 579  DLNELPLDDKNTFHMLSQGDTSGIFQLESGGMRGILREMKPDVFEDIIAVVALYRPGPME 638

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I  +   K+G   I  +H  ++P+LKET G+++YQEQ+MQ+A  ++G+SL E+D+LRRA
Sbjct: 639  QIPTFIQSKHGHIPIKYLHSDLEPILKETYGIMVYQEQIMQVASAMAGFSLGESDLLRRA 698

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            +GKK  E +++Q+E F++G    G  K +A  +++L+ KFA YGFNKSHAAAYA+++YQT
Sbjct: 699  IGKKKLEVLNQQRELFVNGCVAKGHKKEMANELYDLIVKFASYGFNKSHAAAYALVAYQT 758

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-I 835
            A++K +YP +F+AA +T  M   EK+  +  + +Q  I ++PP VN    +F V D + I
Sbjct: 759  AYLKANYPTQFMAAQLTGVMGTTEKVAGYIANCKQMGISVLPPDVNLSEKNFTVTDAKVI 818

Query: 836  YYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y +AA+K VG      I+ A  ++  F SL DFC+RVD +  N++V+ESL+ AGA DC 
Sbjct: 819  RYGMAAVKNVGLGAIESIIAARKEQGDFTSLRDFCARVDLRSCNKKVMESLIKAGAFDCL 878

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD------KITLEKFSVENS 948
            G +R QLL  LD     AQ + K R N    +F   +    D      +  L        
Sbjct: 879  GANRNQLLAILDETVSAAQTMHKERQNGQMCMFEVVEEDEEDCQWVNLQDDLPDIPAPLP 938

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQK 1007
              R   E+  LG Y +GHPL+ Y+ +L         +++     N ++ +A M+   +  
Sbjct: 939  RERLNMEKDTLGLYITGHPLEEYENVLNIYPDLARTDTLQKAPDNKSVVIAGMINGLKPI 998

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+KG  + + T  + A   E   FP
Sbjct: 999  ITKKGKPMAFFTLEDLAGGLEVVVFP 1024


>gi|240949503|ref|ZP_04753843.1| DNA polymerase III subunit alpha [Actinobacillus minor NM305]
 gi|240296076|gb|EER46737.1| DNA polymerase III subunit alpha [Actinobacillus minor NM305]
          Length = 1142

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1043 (39%), Positives = 607/1043 (58%), Gaps = 62/1043 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            ++ G   + +++    AD   A+A+TD  N    ++F  ++ ++G++PIIG  + +    
Sbjct: 1    MINGLAKVKSLVKTAVADNMVAMALTDFTNFCGLVKFYGESLSSGLKPIIGADILV---- 56

Query: 82   NLKMTNQGKTPFPT---VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC-LSWLQ 137
                      P P    V  + LL    +GY  +  L+S  Y   QG   + +   +WL 
Sbjct: 57   ---------RPEPESEEVYELTLLAKNNQGYHNITLLLSMAY--QQGYVDLPLVEKAWLA 105

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE 197
            E   EG+I+L+GG SG + +A    + + AE     +++ F +  Y ++ R    D  R 
Sbjct: 106  EY-NEGIIVLSGGRSGDVGKALLKENVKEAENLTAFYQQYFPNHFYFSICRTGRADEERY 164

Query: 198  -SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRVTPDHYLK 255
             S VV  A    +P+VA N+ +FL E+D+EAH++ +A+  S  +    R  + +P  Y +
Sbjct: 165  ISAVVPFANQKGIPIVAVNDVVFLKEDDFEAHEIRVAIHDSYTLDDPKRLKKYSPQQYFR 224

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF----IEKECDDIQKEEENEL 311
            +  EM  +F+DLP ALENT+EIA+RCS  +++    LP F    +  E   I+K EE   
Sbjct: 225  SEEEMCRLFADLPSALENTIEIAKRCSVTVRLGEYFLPNFPTGDLTTEAFLIKKSEE--- 281

Query: 312  RNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
                  GLE RLA        +    + Y +RL  EL+VI +M F GYFLIV +FIQW+K
Sbjct: 282  ------GLEERLAFLFPDPEERASKREVYDKRLKVELDVINQMGFPGYFLIVMEFIQWSK 335

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D RD
Sbjct: 336  DNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRD 395

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI +V   YG + V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLIP DP   + 
Sbjct: 396  RVIDHVAETYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPGMTLE 455

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A A + +  E   +D  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D
Sbjct: 456  -KAFAAEPKLTELYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCD 514

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDLSLIPF 603
                 PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ +     A+    V +  IP 
Sbjct: 515  SEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINARLTAEGKEPVRIESIPL 574

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            +D +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+++ +V N 
Sbjct: 575  NDKKSFDLLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNF 634

Query: 663  -NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +RK+GKE++        H  + P+L+ T GVI+YQEQVMQIAQ L+GY+L  AD+LRRA
Sbjct: 635  IDRKHGKEEVSYPDAQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRA 694

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  EEM  Q+E F  GA    I   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT
Sbjct: 695  MGKKKPEEMAAQREIFEKGAIDKNIDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 754

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRI 835
             W+K HYP EF+AA M+ EMDN +KI     +     + ++PP +N+    F V +   I
Sbjct: 755  LWLKAHYPAEFMAAVMSSEMDNTDKIVGLYDECINMGLTVVPPDINSGKHHFSVNEKGEI 814

Query: 836  YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y L AIKGVG      I+EA   +  F  L D  +RVD KK+NRR  ++L+ +G+LD  
Sbjct: 815  VYGLGAIKGVGEGPIDAILEARQKEGIFKDLFDLTARVDLKKINRRTFDALIMSGSLDKL 874

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS-----S 949
            G  R  L+++L++  K +    K       ++F    G  ++     + +  N+      
Sbjct: 875  GPHRAALMKNLEDALKASDQHTKMEALGQSDMF----GVLTETPEEVQNAYANTPKWSEQ 930

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
            V  + E+  LG Y SGHP+  +   L         E   T RG  + +A +V+S +   T
Sbjct: 931  VVLDGERATLGLYLSGHPIGRFLKELAHYAPVRLNELQPTYRGQMVTVAGIVMSYRVAVT 990

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
            ++GSRIG  T  + + + +   F
Sbjct: 991  KRGSRIGIATIEDRSGKLDITLF 1013


>gi|302877644|ref|YP_003846208.1| DNA polymerase III, alpha subunit [Gallionella capsiferriformans
            ES-2]
 gi|302580433|gb|ADL54444.1| DNA polymerase III, alpha subunit [Gallionella capsiferriformans
            ES-2]
          Length = 1204

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1104 (38%), Positives = 625/1104 (56%), Gaps = 106/1104 (9%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SP FVHL++HS YS+ +G   ++  +D   AD  PA+A+TD +N    ++F +K    G+
Sbjct: 3    SPVFVHLRLHSEYSITDGMARIDEAVDAAIADGMPALALTDLSNFSGLVKFYKKTRGKGL 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +P+ G  + I        TN+     P    ++LL  ++EGY RL  L+SR YL +Q ++
Sbjct: 63   KPVAGVDVFI--------TNEADRDRPY--RLLLLCQSSEGYLRLCRLLSRAYLSNQYRE 112

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT--FKKLFGDRLYVN 185
               +   W ++ GTEGLI L+G   G +  A    S  VAE R     +  LF DR Y+ 
Sbjct: 113  RAELRREWFKDEGTEGLIALSGAHLGDVGCALM--SGNVAEARRYAQGWAALFEDRYYIE 170

Query: 186  LQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +QR    D   Y ++    LA   +LP+VAT+   FL+  D++AH+  + +A   V++ K
Sbjct: 171  VQRAGFADEAAYVDAATA-LAAGLDLPVVATHPVQFLTSADFKAHEARVCIAEGYVLNDK 229

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R +  T   Y K ++EM  +F+DLPEAL+N+VEIARRC+  L +  P LP F     + 
Sbjct: 230  RREKAFTAQQYFKTQAEMSELFADLPEALQNSVEIARRCNLTLVLGKPRLPDFPTPSGES 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ + +++  GL  R+A     +   A+    Y +RL FE+N I +M F GYFLI
Sbjct: 290  L----DDFMLSESERGLADRMAFLYPDEAERAEKFPQYHERLLFEINTIIKMGFPGYFLI 345

Query: 360  VADFIQWAKK-------NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            VADFI+WAK        N +PVGPGRGSGAGS+ AY L ITD+DPLR+ LLFERFLNP+R
Sbjct: 346  VADFIRWAKAYRSDAFPNGVPVGPGRGSGAGSLVAYCLLITDLDPLRYELLFERFLNPER 405

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFD+DFCQD R+ VI YV+ KYG   V+QI TFG++ +KA +RDVGR ++ PY   
Sbjct: 406  VSMPDFDVDFCQDGRELVIDYVKQKYGAACVSQIATFGTMASKAVIRDVGRVMEFPYGLC 465

Query: 473  DRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            DRL K IP +   PVSLQ   + +        ++  V  LLE++ +LE L R+   HA G
Sbjct: 466  DRLSKAIPLEGVKPVSLQKAREMEPEINAIAESEEGVPELLELAMRLEDLTRNVGMHAGG 525

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-- 589
            +VI    L+   P+Y        V+QF+   +E  GL+KFDFLGL+TLT++  ++  +  
Sbjct: 526  VVIAPGKLTDFCPLYCADGGASVVSQFDKDDVEAIGLVKFDFLGLRTLTIIDWAVRHIHR 585

Query: 590  --------------------AQRGVKVD------------------LSLIPFDDHETYHL 611
                                 + G +++                  +  IP DD  +Y L
Sbjct: 586  LQARDRKGLPRTTNETTTELLREGSRIEDQTQVSTQSSVHNPQLFSIEAIPLDDKPSYDL 645

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPD  EDI+ALV+L+RPGP+++ +V  + +RK+G+ 
Sbjct: 646  LKKCNTTAVFQLESRGMKDLIKRLQPDTFEDIVALVALFRPGPLESGMVDDFVDRKHGRA 705

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
                 HP ++  LK T GVI+YQEQVMQI+Q++ GY+L  AD+LRRAMGKK   EM +Q+
Sbjct: 706  TADYFHPELEASLKPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKDPAEMARQR 765

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+SGA    I K +A  +F+L+  FA YGFNKSH+AAYA+++YQTA++K H+P  F+A
Sbjct: 766  DIFVSGALNREIDKDLATRLFDLMEMFAGYGFNKSHSAAYALVAYQTAYLKAHHPAAFMA 825

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTT 848
            A+++ ++DN EK++ F  D  Q  I I+ P VN+    F   D + I Y L AIKG G  
Sbjct: 826  ATLSGDLDNTEKVRTFYADTLQQGITILLPDVNSSGYAFSPTDEKTISYGLGAIKGTGEA 885

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
                I++A A  PF  L DFC RVD + +NRR +E+L+ AGA D     R  L+ S+D  
Sbjct: 886  AIASIVKARATGPFKDLFDFCRRVDKRAVNRRTIETLIRAGAFDSINDHRAALMASVDAA 945

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE-KFSVENSSVR--FENEQRVLGFYFSG 965
               A   ++ R+   +++F  +    +D + +E K  V   S+R     E+  LG Y  G
Sbjct: 946  LASAD--QQARSINQDSLFGEDD---ADAVLIEQKSDVPRWSLREQLAFEKVSLGIYLGG 1000

Query: 966  HPLDVYKPIL-----------------RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
            HP   Y+  L                 +  G  GY     + RG  +RLA +V   + ++
Sbjct: 1001 HPYQEYEKELTNFIKVRLGDLTPAFLGKNSGSGGY----VSRRGVQVRLAGIVSGLRLQQ 1056

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            TR+G R+  +T  + + + E   F
Sbjct: 1057 TRRG-RMAVITLDDGSAQIELTVF 1079


>gi|94501921|ref|ZP_01308431.1| DNA polymerase III, alpha subunit [Oceanobacter sp. RED65]
 gi|94425974|gb|EAT10972.1| DNA polymerase III, alpha subunit [Oceanobacter sp. RED65]
          Length = 1164

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1053 (39%), Positives = 613/1053 (58%), Gaps = 55/1053 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL+VH+ YSL++G + +  ++    ADQQ A+ I+D +N+F+ ++F     A GI+P
Sbjct: 6    SFVHLRVHTEYSLVDGIVRVKELIKAADADQQIALTISDQSNMFALVKFYTACQATGIKP 65

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            II   + I+  D++        P+    +I L+     GY+ L ELVS  +  +Q     
Sbjct: 66   IISADVFIENPDDMA------NPY----AITLIAQNDVGYRNLTELVSAGFTKNQHHDRA 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
            ++   W +E   +GLI L+G   G I+ A   +  ++A  RL  + +LF  R Y+ LQR 
Sbjct: 116  QLKQEWFEE-KADGLIALSGFQRGDIEEALKKDKFELAASRLDRWLELFPQRFYLELQRT 174

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247
             R  D     + ++LA   ++P+VATN+  F+ ++D++AH+  + +    T++  +   R
Sbjct: 175  QRPNDEALLQKSIKLAADKQVPVVATNDVRFMKQDDFDAHEARVCIGEGMTLIDPRRERR 234

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   Y K + +M  +F D+P A+ N+VEIA RC+  + +    LP +   +        
Sbjct: 235  YSDQQYFKTQQQMCELFEDIPSAITNSVEIATRCNVQVLLGKYFLPEYPIPDG-----LT 289

Query: 308  ENELRNK-AVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVAD 362
            ENE   K +  GLE RL           ++ R+    RLDFEL++I +M F GYFLIV D
Sbjct: 290  ENEFFKKISYEGLEERLEFLIDKNDPQYEEVRKAYFDRLDFELDIIIQMGFPGYFLIVMD 349

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK ++IPVGPGRGSGAGS+ AYA  ITDIDPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 350  FIQWAKDHDIPVGPGRGSGAGSLVAYAQKITDIDPLEYDLLFERFLNPERVSMPDFDIDF 409

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C ++RD VI YV + YG E V+QI+T+G++ AKA +RDV R     Y   D+L KLIP D
Sbjct: 410  CMEKRDRVISYVADNYGREAVSQIVTYGTMAAKAVVRDVARVQGKSYGLADKLSKLIPGD 469

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   ++ +A+ ++    E   +D     + E++QKLEG+ R    HA G+VI    L+  
Sbjct: 470  PGMTLA-KALDEEPALGEFIDSDEEAQEIWEMAQKLEGITRQTGKHAGGVVIAPTKLTDF 528

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
             P   +      VTQF+   +E AGL+KFDFLGL+TLT++  +L+ +     K     + 
Sbjct: 529  SPTLCEEDGTGLVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALNTINDIRAKNNEEPLR 588

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP DD  +Y LL    T  +FQLES GM+  +  ++PD IE++IALV+L+RPGP+++
Sbjct: 589  IEEIPLDDAPSYKLLKEAKTTAVFQLESRGMKDLIRRLEPDNIEEMIALVALFRPGPLES 648

Query: 658  IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   HP      +  +L+ T GVI+YQEQVMQIAQ+L+GY+L  A
Sbjct: 649  GMVDDFINRKHGRAEVAYPHPDYQHESLKEILEPTYGVIVYQEQVMQIAQVLAGYTLGGA 708

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+E F  GA+  G    +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 709  DMLRRAMGKKKPEEMAKQRETFREGAASIGNDPDLAMKIFDLVEKFAGYGFNKSHSAAYA 768

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            V+SYQT W+KTHYP  F+AA +T +M N +K+  F ++ R+  + ++ P VN     F V
Sbjct: 769  VVSYQTLWLKTHYPAPFMAAVLTSDMQNTDKVVIFIEECREMGLDLVLPDVNESEYGFTV 828

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D+  I Y L A+KGVG      I+ A  +K PF  L  FC  VD  K+N+RVLE+LV  
Sbjct: 829  NDSGAIVYGLGAVKGVGEGPIEAIITARKEKGPFTDLFHFCKSVDKSKINKRVLEALVRC 888

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D  G +R  L  S+++  K A    KN      ++F    G   ++  +  +    +
Sbjct: 889  GAFDKIGPNRSVLFASIEDALKAADQSAKNAAAGMMDMF----GVVEEEANINPYDEYKN 944

Query: 949  SVR-------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAA 999
             VR        + E+  LG Y +GHP D Y+  L+ +        +A I+ +    ++A 
Sbjct: 945  KVRDWTPKQKLKGEKDTLGLYVTGHPFDEYETELKNIA----RTRLANIQADKKPQKIAG 1000

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV ++  KT++G  +  VT  +     +   F
Sbjct: 1001 IVVDQRVMKTKRGGNMAIVTIDDRTARMDVRLF 1033


>gi|217420148|ref|ZP_03451654.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 576]
 gi|217397452|gb|EEC37468.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 576]
          Length = 1234

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 64   PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 123

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 124  PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 173

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ LQR
Sbjct: 174  AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 233

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R 
Sbjct: 234  YGQPGAEAYIQ-QAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 292

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   +  
Sbjct: 293  KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 350

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GL+ RL Q       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 351  --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 408

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 409  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 468

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 469  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 528

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 529  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 588

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 589  FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 648

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 649  AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 708

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 709  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 768

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 769  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 828

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+     D + 
Sbjct: 829  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 888

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA 
Sbjct: 889  SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 948

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 949  DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 1005

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 1006 LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1061

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1062 RGKMV 1066


>gi|167737755|ref|ZP_02410529.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 14]
          Length = 1103

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ LQR
Sbjct: 114  AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   +  
Sbjct: 233  KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GL+ RL Q       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 529  FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      ++ A  +KPF  L DFC R+D + +NRR +E+++ AGA 
Sbjct: 829  SRTIRYGLGAIKGSGQNAIEEVLRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 889  DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 946  LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1002 RGKMV 1006


>gi|90415809|ref|ZP_01223742.1| DNA polymerase III, alpha subunit [marine gamma proteobacterium
            HTCC2207]
 gi|90332183|gb|EAS47380.1| DNA polymerase III, alpha subunit [marine gamma proteobacterium
            HTCC2207]
          Length = 1132

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/1022 (40%), Positives = 603/1022 (59%), Gaps = 51/1022 (4%)

Query: 42   PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
            PA+A+TD NN F+A++F +    +GI+PI+G  L +     L  + +G    PT   +VL
Sbjct: 2    PAVALTDFNNFFAAVKFYKATQGSGIKPILGTDLLV-----LDESGEGS---PT--QLVL 51

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
            LV    GY  L +L+S+ Y   Q +    I  SWL E  ++GLI L+GG SG I  A   
Sbjct: 52   LVKDQTGYANLTKLISKAYQDGQRQGVPHIKKSWLGEF-SDGLIALSGGRSGEIGVALVS 110

Query: 162  NSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
            N    A   L  F  LFGDR Y+ LQR  R  +       V LA  +  P+VATN+  F+
Sbjct: 111  NRLDDAATALEEFTALFGDRFYLELQRTGRPEEEDYLHAAVDLAARYNCPVVATNDVRFI 170

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            S++++EAH+  + +     +    R R  +   YL++  EMV +FSD+PEALEN+VEIAR
Sbjct: 171  SKDEFEAHEARVCIHEGRALDDPRRERRFSEQQYLRSPEEMVELFSDIPEALENSVEIAR 230

Query: 280  RCSFILQVHAPILPRFIEKECDDIQK----EEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
            RCS  +++    LP +   E   I +    E +  L+N+    LEV     A       +
Sbjct: 231  RCSIDIRLGEYFLPDYPIPEGMTINEFFTLESKKGLQNR----LEVLYDTSAPDFPEIQK 286

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
             Y +RL+FEL +I +M+F GYFLIV DFI WAK N IPVGPGRGSGAGS+ AY+L ITD+
Sbjct: 287  RYMERLEFELKIIIQMEFPGYFLIVMDFIGWAKTNLIPVGPGRGSGAGSLVAYSLLITDL 346

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DPL + LLFERFLNP+R+SMPDFDIDFC + RD VI YV  +YG + V+QI+TFG++ AK
Sbjct: 347  DPLEYDLLFERFLNPERVSMPDFDIDFCMEGRDRVIAYVAEQYGRDAVSQIVTFGTMAAK 406

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
            A +RDV R     Y   D+L KLIP +    +  +A+  +   ++    D     +  ++
Sbjct: 407  AVVRDVARVQGKSYGLADKLSKLIPFEVGMTLE-KAVEQEETLKQFLDEDDEAGEIWGMA 465

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
             +LEG+ R+   HA G+VI    ++   P+Y D      VTQF+   +E AGL+KFDFLG
Sbjct: 466  LQLEGVARNCGKHAGGVVIAPTLITDFSPIYCDETGAGVVTQFDKNDVEDAGLVKFDFLG 525

Query: 576  LKTLTLLQKSLDFL-AQRG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            L+TLT++  ++  + A R       +++  IP DD  TY L+    T  +FQLES GM++
Sbjct: 526  LRTLTIIDWAVRMINADRSNIGEEPLEIDKIPLDDQPTYGLMQRAETTAVFQLESRGMKE 585

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLK 683
             ++ + PD  EDIIALV+L+RPGP+ + +V  + NRK G+ ++   H       + P L+
Sbjct: 586  LIKKLGPDRFEDIIALVALFRPGPLQSGMVDDFINRKKGRAEVSYPHSQYQHECLKPALE 645

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T G+I+YQEQVMQIAQ + GY+L  AD+LRRAMGKK  +EM KQ+E F+ GA   G +K
Sbjct: 646  PTYGIILYQEQVMQIAQEMGGYTLGGADLLRRAMGKKNADEMAKQRELFMDGAIGKGFTK 705

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +A NIF+L+ KFA YGFNKSH+AAYA+++YQTAW+K HYP +F+AA+++ +MD  +K+ 
Sbjct: 706  ELASNIFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKQHYPAQFMAATISSDMDKTDKVV 765

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KP 861
             F  + R  N++++PP VN     F V   NR+ Y L AIKG+G     +I+ A  +  P
Sbjct: 766  TFIDECRAMNLELLPPDVNGGQFHFSVDQQNRVIYGLGAIKGLGEGPVSNILAARNEGGP 825

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALD------CFGYSRMQLLQSLDNIQKYAQWV 915
            F  L DFC+RVD +K+N+R +E+L+ +GA D        GY R  +L ++D   K A+  
Sbjct: 826  FKDLFDFCARVDGRKVNKRAIEALIRSGAFDEVGPEGEIGYRRAVMLAAMDQAVKLAEQH 885

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPLDVYK 972
             +N ++   ++F +     +  I    +    S     R   E+  LG Y +GHP+D Y+
Sbjct: 886  ARNTSSGMGDLFGNSIVESASDINYTSYGAARSLSGRERLNGERDTLGLYLTGHPIDEYE 945

Query: 973  PILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
              L+KM    +   ++ +R   +   ++ M+++ +  K ++G    ++T  + +   E +
Sbjct: 946  EELQKM----HPNRISKLRPAKVLATVSGMIIAMRVMKNKRGENFAFITLDDKSGRLELS 1001

Query: 1031 FF 1032
             F
Sbjct: 1002 IF 1003


>gi|126453191|ref|YP_001065485.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 1106a]
 gi|242315814|ref|ZP_04814830.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106b]
 gi|254298453|ref|ZP_04965905.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 406e]
 gi|126226833|gb|ABN90373.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106a]
 gi|157808232|gb|EDO85402.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 406e]
 gi|242139053|gb|EES25455.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106b]
          Length = 1174

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ LQR
Sbjct: 114  AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGGEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   +  
Sbjct: 233  KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GL+ RL Q       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 529  FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA 
Sbjct: 829  SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 889  DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 946  LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1002 RGKMV 1006


>gi|121600233|ref|YP_992382.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia mallei SAVP1]
 gi|121229043|gb|ABM51561.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia mallei SAVP1]
          Length = 1686

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 516  PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 575

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 576  PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 625

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ LQR
Sbjct: 626  AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 685

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R 
Sbjct: 686  YGQPGAEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 744

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   +  
Sbjct: 745  KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 802

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GL+ RL Q       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 803  --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 860

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 861  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 920

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 921  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 980

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 981  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 1040

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 1041 FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 1100

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 1101 AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 1160

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 1161 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 1220

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 1221 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 1280

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TPCVDFKVGD 832
            +K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N       P  +     
Sbjct: 1281 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNDRFEPVAEADGKR 1340

Query: 833  NR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +R I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA 
Sbjct: 1341 SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 1400

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 1401 DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 1457

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 1458 LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1513

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1514 RGKMV 1518


>gi|53718752|ref|YP_107738.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei K96243]
 gi|237811495|ref|YP_002895946.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei MSHR346]
 gi|254181269|ref|ZP_04887866.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1655]
 gi|254195140|ref|ZP_04901569.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei S13]
 gi|254261192|ref|ZP_04952246.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1710a]
 gi|52209166|emb|CAH35110.1| putative DNA polymerase III alpha subunit [Burkholderia pseudomallei
            K96243]
 gi|169651888|gb|EDS84581.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei S13]
 gi|184211807|gb|EDU08850.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1655]
 gi|237506197|gb|ACQ98515.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei MSHR346]
 gi|254219881|gb|EET09265.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1710a]
          Length = 1174

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ LQR
Sbjct: 114  AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CDD 302
             R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +    DD
Sbjct: 233  KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSLDD 292

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               +   E  +K +  L    A+    +G     Y QRLDFE   I +M F GYFLIVAD
Sbjct: 293  YLVQLSQEGLDKRLVQLYPDEAEREAQRG----KYNQRLDFECGTIKKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 529  FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA 
Sbjct: 829  SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 889  DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 946  LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1002 RGKMV 1006


>gi|134281214|ref|ZP_01767923.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 305]
 gi|226195389|ref|ZP_03790978.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pakistan
            9]
 gi|134247520|gb|EBA47605.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 305]
 gi|225932591|gb|EEH28589.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pakistan
            9]
          Length = 1234

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 64   PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 123

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 124  PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 173

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ LQR
Sbjct: 174  AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 233

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R 
Sbjct: 234  YGQPGGEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 292

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   +  
Sbjct: 293  KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 350

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GL+ RL Q       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 351  --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 408

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 409  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 468

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 469  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 528

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 529  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 588

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 589  FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 648

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 649  AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 708

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 709  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 768

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 769  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 828

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+     D + 
Sbjct: 829  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 888

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA 
Sbjct: 889  SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 948

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 949  DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 1005

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 1006 LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1061

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1062 RGKMV 1066


>gi|119505681|ref|ZP_01627751.1| DNA polymerase III subunit alpha [marine gamma proteobacterium
            HTCC2080]
 gi|119458493|gb|EAW39598.1| DNA polymerase III subunit alpha [marine gamma proteobacterium
            HTCC2080]
          Length = 1153

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1024 (40%), Positives = 602/1024 (58%), Gaps = 45/1024 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +SL++G + +  ++ ++AA   PA+A+TD  N +  ++  + A  AG++ I
Sbjct: 4    FVHLRLHTEFSLVDGLVRIPKLMGEVAAQGMPAVAVTDATNFYGLIKAYKAAQRAGLKLI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  L ++  D+         P P    I LL    +GYQ L  L+S+ +   Q   S R
Sbjct: 64   VGVDLWVEDADDRD------RPKP----ISLLAMNEQGYQNLTLLISKAWREGQYHGSPR 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR--LLTFKKLFGDRLYVNLQR 188
            I   WL +   EG++ L+ G  G   +    N+  V E R  L  +   F +R Y+ + R
Sbjct: 114  IERDWL-DAHAEGVLALSAGCQGEFGQ--LLNNGHVEEARASLKRWMATFPERFYIEVHR 170

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                G + +  +  V+LA   E P+VATN+  FL+  ++EAH+  + + +   +    RP
Sbjct: 171  TGRIGEEDFLHA-AVELAAEMECPIVATNDVRFLNTSEFEAHEARVCIGYGRTLDDPRRP 229

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  +   YL+   EM  +FSDLPE+L NTVEIARRCS  + +  P LP F   +   I  
Sbjct: 230  REYSEQQYLRTPEEMAELFSDLPESLANTVEIARRCSVTIPLGEPSLPDFPVPDGTTI-- 287

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E+ L   +  GL  RL Q  +       +Y+QRLDFEL VI  M F GYFL+V DFI+
Sbjct: 288  --EDFLSQLSHDGLSRRLEQLQLTDPDTLSEYKQRLDFELGVINEMGFPGYFLVVMDFIR 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            W K+  IPVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP R+SMPDFD+DFC D
Sbjct: 346  WGKQQGIPVGPGRGSGAGSLVAYVLEITDLDPLAYDLLFERFLNPQRVSMPDFDVDFCMD 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI YV + YG E V+QIITFG++ AKA +RDV R    PY   D++ KLIP +   
Sbjct: 406  RRDEVIEYVADTYGREAVSQIITFGTMAAKAVVRDVARVQDKPYGLADKMSKLIPFEVG- 464

Query: 486  PVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             ++L+ A+  +    +    D S   + +++ +LEG+ R+   HA G+VI    L+   P
Sbjct: 465  -ITLEKAVEQEEALAQLLKEDGSAQEIWDMAIQLEGVTRNVGKHAGGVVIAPSRLTDFSP 523

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG----VKVDLS 599
            +Y D      VTQ++   +E+AGL+KFDFLGL+TLT++  ++  + + RG     K+D+S
Sbjct: 524  LYCDEAGGGLVTQYDKNDVEEAGLVKFDFLGLRTLTIIDWAVAMINKARGHEQPEKLDIS 583

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   + LL +  T  +FQLES GM+  ++ +QPD  EDIIALV+L+RPGP+ + +
Sbjct: 584  EIPLDDSRVFTLLKSAETTAVFQLESRGMKDLIKRLQPDSFEDIIALVALFRPGPLQSGM 643

Query: 660  VYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            V N  NRK+G+E +        H  + P+L+ T G+I+YQEQVMQIAQ L+GY+L  AD+
Sbjct: 644  VDNFINRKHGREALAYPDASYQHSSLQPILEPTYGIILYQEQVMQIAQELAGYTLGGADL 703

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  EEM KQ+  F  GASK GI   +A+ IF+L+ KFA YGFNKSH+AAYA++
Sbjct: 704  LRRAMGKKKPEEMAKQRSVFEEGASKKGIDPNLAMKIFDLVEKFAGYGFNKSHSAAYALV 763

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-G 831
            SYQTAW+KTH+P EF+AA M+ E+DN +K+     + +   + +  P VN     F V  
Sbjct: 764  SYQTAWLKTHFPAEFMAAVMSSELDNTDKLLTLRDECKSMGVPLRLPGVNEGAYLFTVNA 823

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             N I Y L AIKG+G     +++ A  AD  F  L D CSR D +K+NRR LE+L+ +GA
Sbjct: 824  ANEIVYGLGAIKGLGEGPVENLLAARVADGAFKDLFDLCSRTDPRKVNRRALEALIKSGA 883

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            LD FG  R   L +LD+  + A+    N      ++F     T       E   V   ++
Sbjct: 884  LDGFGVERWIQLAALDDALRAAEQTVANDEAGMTDLFGDVAPTADGDPYAEHRGVRPWTL 943

Query: 951  R--FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
            +     E+  +G + SGHP+  Y+  +RK   +   +       +N  +A ++V  +  K
Sbjct: 944  KEILNGEKESVGSFLSGHPIQEYEAEVRKFAPRRLRDLQPD---SNTTVAGLIVDIRTIK 1000

Query: 1009 TRKG 1012
            T++G
Sbjct: 1001 TQRG 1004


>gi|254785234|ref|YP_003072662.1| DNA polymerase III subunit alpha [Teredinibacter turnerae T7901]
 gi|237687442|gb|ACR14706.1| DNA polymerase III, alpha subunit [Teredinibacter turnerae T7901]
          Length = 1171

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1058 (39%), Positives = 603/1058 (56%), Gaps = 58/1058 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL+V + +SL++  + +  +L ++ A+  PA  ITD +N F  L+F + A  +GI+P
Sbjct: 2    NFVHLKVRTEFSLVDSIIRVKPLLQRVQAEAMPACGITDLHNFFGLLKFYRAAQGSGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G    I      K  +    P    P I L      GY+ +  L+SR +   Q     
Sbjct: 62   ICGADFRIH-----KAGDDDLHP----PLITLYAMNLAGYKNITALISRSFQEGQSMGEP 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I  SWL E  +EG+I L+G   G I +    N    AE++L     ++ DR Y+ LQR 
Sbjct: 113  YIDESWL-EPHSEGVIALSGAKFGEIGQLLVTNKLDEAEEKLQQMMGIYRDRFYLELQRT 171

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             R  D     + V LA   + P+VATN+  FL  + +E H+  + +     +    R R 
Sbjct: 172  GRENDELHLHRAVGLAAKLDCPVVATNDVRFLDSDQFEVHEARVCIGEGRTLDDPRRERR 231

Query: 249  TPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  Y ++ +EM  +F+D+PEA+ENTVEIARRC+  + +    LP +   E        
Sbjct: 232  YSDEQYFRSTAEMCELFADIPEAIENTVEIARRCNLDILLGKYFLPEYPIPE-----GLT 286

Query: 308  ENELRNKAV-AGLEVRLAQ--GAIAKGY--HAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            ENE   K    GL++RL +     A  Y    + Y +RL FEL++I +M F GYFLIV D
Sbjct: 287  ENEFFEKICREGLDLRLERILDTSAPDYLERRKVYDERLKFELDIIIQMGFPGYFLIVMD 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK + IPVGPGRGSGAGS+ AY L ITD+DPL++ LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FIQWAKDHKIPVGPGRGSGAGSLVAYVLKITDLDPLQYDLLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD+VI YV + YG + V+QIITFG++ AKA +RDV R     Y   D+L K+IP D
Sbjct: 407  CMEDRDKVIGYVADNYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPPD 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                ++ +A   +   RE    D     + +++ +LEG+ R+   HA G+VI    L   
Sbjct: 467  VGMTLT-KAYEQEEILREFLQNDGDGQEIWDMALQLEGVTRNVGKHAGGVVIAPTKLIDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
             P+Y D      VTQF+   +E AGL+KFDFLGL+TLT++  ++  + Q+  +     +D
Sbjct: 526  APLYCDDTGGGLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWAVTMIDQQRTRLGEPPLD 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +S IP DD  T+ +L    T  +FQLES GM+  ++ +QPD +ED+IALV+L+RPGP+ +
Sbjct: 586  ISAIPLDDPTTFDMLKKAETTAVFQLESRGMKDLIKRLQPDNLEDMIALVALFRPGPLQS 645

Query: 658  IVV--YNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++        H  + P+L+ T GVI+YQEQVMQIAQ+L+GY+L  A
Sbjct: 646  GMVDDFINRKHGRAQVAYPDAKYQHTSLQPILEPTYGVIVYQEQVMQIAQVLAGYTLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DLLRRAMGKKKPEEMAKQRSIFADGAKGLGIDPDLAMKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+K HYP  F+AA+M+ +MD  +K+  F ++ R   + ++PP VN     F V
Sbjct: 766  LVSYQTAWLKAHYPAHFMAATMSSDMDKTDKVVTFIEECRTMKLNLLPPDVNRGEFQFTV 825

Query: 831  G-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              D  I Y L AIKG+G      I+EA    PF  L DFC+RVD ++LN+R LE+LV +G
Sbjct: 826  DEDANIIYGLGAIKGLGEGPVESILEARKTGPFKDLFDFCARVDGRRLNKRALEALVRSG 885

Query: 890  ALDCFG------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-------EKGTFSD 936
            ALD  G      Y R  +  ++    K A+    N      ++F          +  + D
Sbjct: 886  ALDNLGPGKDIDYDRAVMHIAIAEAVKAAEQKSANANAGISDLFGEVVPVSEDRQSVYQD 945

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NN 994
               + ++S++    R   E+  LG Y +GHP+D Y   L           +  ++   N 
Sbjct: 946  FHRVRRWSMKE---RLNGEKETLGLYLTGHPIDEYDKELSNF----VSSRIFHLKAEKNK 998

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +A +VV+ +  KT++G  + +VT  +     E   F
Sbjct: 999  QTVAGLVVAFRVMKTKRGDNMAFVTLDDRTGRIEVAVF 1036


>gi|126440764|ref|YP_001058246.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 668]
 gi|126220257|gb|ABN83763.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 668]
          Length = 1274

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 104  PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 163

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 164  PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 213

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ LQR
Sbjct: 214  AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 273

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R 
Sbjct: 274  YGQPGAEAYIQ-QAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 332

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   +  
Sbjct: 333  KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 390

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GL+ RL Q       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 391  --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 448

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 449  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 508

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 509  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 568

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 569  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 628

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 629  FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 688

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 689  AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 748

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 749  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 808

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 809  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 868

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+     D + 
Sbjct: 869  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 928

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA 
Sbjct: 929  SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 988

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 989  DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 1045

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 1046 LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1101

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1102 RGKMV 1106


>gi|53725488|ref|YP_103508.1| DNA polymerase III subunit alpha [Burkholderia mallei ATCC 23344]
 gi|67640628|ref|ZP_00439428.1| DNA polymerase III, alpha subunit [Burkholderia mallei GB8 horse 4]
 gi|124383354|ref|YP_001026814.1| DNA polymerase III subunit alpha [Burkholderia mallei NCTC 10229]
 gi|126449054|ref|YP_001079902.1| DNA polymerase III subunit alpha [Burkholderia mallei NCTC 10247]
 gi|167000890|ref|ZP_02266691.1| DNA polymerase III, alpha subunit [Burkholderia mallei PRL-20]
 gi|254175785|ref|ZP_04882445.1| DNA polymerase III, alpha subunit [Burkholderia mallei ATCC 10399]
 gi|254202193|ref|ZP_04908556.1| DNA polymerase III, alpha subunit [Burkholderia mallei FMH]
 gi|254207520|ref|ZP_04913870.1| DNA polymerase III, alpha subunit [Burkholderia mallei JHU]
 gi|254359936|ref|ZP_04976206.1| DNA polymerase III, alpha subunit [Burkholderia mallei 2002721280]
 gi|52428911|gb|AAU49504.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia mallei ATCC
            23344]
 gi|124291374|gb|ABN00643.1| DNA polymerase III, alpha subunit [Burkholderia mallei NCTC 10229]
 gi|126241924|gb|ABO05017.1| DNA polymerase III, alpha subunit [Burkholderia mallei NCTC 10247]
 gi|147746440|gb|EDK53517.1| DNA polymerase III, alpha subunit [Burkholderia mallei FMH]
 gi|147751414|gb|EDK58481.1| DNA polymerase III, alpha subunit [Burkholderia mallei JHU]
 gi|148029176|gb|EDK87081.1| DNA polymerase III, alpha subunit [Burkholderia mallei 2002721280]
 gi|160696829|gb|EDP86799.1| DNA polymerase III, alpha subunit [Burkholderia mallei ATCC 10399]
 gi|238521386|gb|EEP84838.1| DNA polymerase III, alpha subunit [Burkholderia mallei GB8 horse 4]
 gi|243063197|gb|EES45383.1| DNA polymerase III, alpha subunit [Burkholderia mallei PRL-20]
          Length = 1174

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ LQR
Sbjct: 114  AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   +  
Sbjct: 233  KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GL+ RL Q       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 529  FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TPCVDFKVGD 832
            +K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N       P  +     
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNDRFEPVAEADGKR 828

Query: 833  NR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +R I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA 
Sbjct: 829  SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 889  DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 946  LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1002 RGKMV 1006


>gi|187923250|ref|YP_001894892.1| DNA polymerase III subunit alpha [Burkholderia phytofirmans PsJN]
 gi|187714444|gb|ACD15668.1| DNA polymerase III, alpha subunit [Burkholderia phytofirmans PsJN]
          Length = 1192

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1028 (39%), Positives = 615/1028 (59%), Gaps = 52/1028 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A   G++
Sbjct: 7    PRFVHLRVHSEFSIADGIVRLDDIVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+  L +Q +  
Sbjct: 67   PIAGC--------DVWITNPDDRDKPS--RLLLLVKDRRGYLNLCELLSKASLTNQYRGR 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   WL+    EGL+ L+G   G +  A    + + A++  L + K+F    Y+ LQR
Sbjct: 117  AEVEAGWLESGLGEGLLALSGAQQGDVGLALAAGNEEAAKRNALHWAKVFPGGFYIELQR 176

Query: 189  --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                G ++Y + Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++   R 
Sbjct: 177  SGQPGGEQYVQ-QAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRS 235

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + Y + + EM ++F+D+P AL N+VEIA+RC+  L++  P LP F   +   +  
Sbjct: 236  KRFTSEQYFRTQEEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 293

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RL Q    A  +    + Y  RL+FE   I +M F GYFLIVAD
Sbjct: 294  --DDYLVQLSKEGLEKRLEQLYPDAAEREAQRETYYARLEFECGTIIKMGFPGYFLIVAD 351

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 352  FINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDF 411

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 412  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 471

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LLE++Q++EGL R+   HA G++I    L+ 
Sbjct: 472  PGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTD 531

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +    K D SL
Sbjct: 532  FCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSL 591

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPGP+D I
Sbjct: 592  GQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLI 651

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+E +    P ++ +L+ET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 652  PSFCARKHGREVVEYPDPRVESVLRETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 711

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM + +E F  GA+KNG++   A  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 712  KKKAEEMAEHRELFRQGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 771

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGD----- 832
            +K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP VN     F+ V +     
Sbjct: 772  LKAHHPAEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDVNLSAYRFEPVAEPDGKR 831

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  + PF  + DFC+RVD + +NRR +E+L+ AGA 
Sbjct: 832  SKTIRYGLGAIKGSGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALIRAGAF 891

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--SDKITLEKFSVEN-- 947
            D    +R QL+ S+    + A+    N         A + G F   D  +     V+   
Sbjct: 892  DTLHANRAQLIASVSLAMEAAEQASAN---------ALQAGLFDMGDAPSQGHELVDEPE 942

Query: 948  --SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004
                 + + E+  LGFY SGH  D YK  +R+       + +  ++ G +  +A ++ S 
Sbjct: 943  WPEKKKLQEEKAALGFYLSGHLFDAYKNEVRRF----VRQKIGELKEGRDKLVAGVIASL 998

Query: 1005 QQKKTRKG 1012
            + + T++G
Sbjct: 999  RTQMTQRG 1006


>gi|121611396|ref|YP_999203.1| DNA polymerase III subunit alpha [Verminephrobacter eiseniae
           EF01-2]
 gi|121556036|gb|ABM60185.1| DNA polymerase III, alpha subunit [Verminephrobacter eiseniae
           EF01-2]
          Length = 1186

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1004 (40%), Positives = 582/1004 (57%), Gaps = 53/1004 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL++H+ +S+++G   ++ +    AAD QPA+AITD NNLF A++F +   + G++PI
Sbjct: 2   FVHLRMHTEFSVVDGTNRIDEVARAAAADGQPALAITDLNNLFGAVKFYKATRSQGVKPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           +G ++ +              P    P+ +++LV + +GY  L EL++R +     K   
Sbjct: 62  VGAEIFL------------PGPAGAAPARLIVLVQSHQGYLNLSELLTRAWTRGVVKNQA 109

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
               +WL+E+  EGLI+L G  +GP+ +A        A +  L    +F  R ++ LQR 
Sbjct: 110 LCHWAWLEEL-AEGLIVLAGAQAGPVGQALLKGDDAGAAETALRLAGMFPHRFFIELQRA 168

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
            R  D    +    LA    LP+VAT+   F   +DYEAH+  + +A   +++   R R 
Sbjct: 169 GRADDESHVAAAAALAARLRLPVVATHPVQFARADDYEAHEARICIAEGDILANPRRQRK 228

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            T D Y K+ +EM  +F+DLP AL NTVEIARRC+  L +  P LP F       I    
Sbjct: 229 FTRDQYFKSAAEMQRLFADLPSALANTVEIARRCNLTLVLGKPQLPDFPTPGGMPI---- 284

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFI 364
           E   R  +V GLE RL           Q    Y  RL+FE+  I  M F+GYFLIV DFI
Sbjct: 285 EAYFRVASVNGLEQRLLCLYPEPAQREQQRPRYLARLEFEIGTIVEMGFAGYFLIVGDFI 344

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           QWA+ N  PVGPGRGSGAGS+ AYA+ ITD+DPL + LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 345 QWARNNGCPVGPGRGSGAGSLVAYAMGITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQ 404

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RD VI YV++KYG + V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P 
Sbjct: 405 ANRDRVIDYVKDKYGKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGIAKLVPAKPG 464

Query: 485 ------HPVSLQAIADDSRF---REARLAD-----PSVDRLLEISQKLEGLYRHASTHAA 530
                 +P + +   D + +    E +LA+       V  ++E++QKLEGL R+   HA 
Sbjct: 465 ISYTLQYPPNPKKEGDKNHYVLELEPQLAERMRKEEDVRTVIEMAQKLEGLTRNIGMHAG 524

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           G++I    L+   P+Y+   S   V+Q++   +E  GL+KFDFLGL TLT+LQ + +F+ 
Sbjct: 525 GVLIAPGKLTDFCPLYQPPGSASAVSQYDKDDVEAIGLVKFDFLGLATLTILQLAREFIV 584

Query: 591 QR-GVKVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            R   + D S   I  DD  TY L +   T  +FQ ES GM+  L+  +P  + D+IAL 
Sbjct: 585 GRHKGQQDFSYDAIALDDGPTYRLFSEGQTEAVFQFESRGMQGMLKEARPSRLGDLIALN 644

Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
           +LYRPGP+D I  + NRKNGKE ++  HPL++ +L ET G+++YQEQVMQ AQLL GYSL
Sbjct: 645 ALYRPGPMDLIPSFINRKNGKEPVLYPHPLVESVLAETYGIMVYQEQVMQTAQLLGGYSL 704

Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             AD+LRRAMGKK  EEM + +  F  GA++ G+S+  A  +F+L+ KFA YGFNKSHAA
Sbjct: 705 GGADMLRRAMGKKKAEEMAEHRAIFRKGAAEKGLSQEKADEVFDLMEKFAGYGFNKSHAA 764

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
           AY++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DAR+  +   PP VN     
Sbjct: 765 AYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDARKMGLAFEPPDVNRGGHR 824

Query: 828 FKVGDNRIY-YSLAAIKGVGTTTARHIMEA----------SADKPFDSLEDFCSRVDSKK 876
           F+   N+I  Y L AIKG G      I+ A          +   PF SL DFC RVD  +
Sbjct: 825 FEPVSNKIIRYGLGAIKGTGQQAIEAIVAAREGRGEGPRGACSGPFKSLFDFCVRVDRAR 884

Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY--AQWVEKNRTNKHENIFAHEKGTF 934
           LN+R +E+L+ AGA D     R  L+ S+D    +  A     N+ +  + + A   G+ 
Sbjct: 885 LNKRTVEALIKAGAFDSIERHRAALVASIDRAFDFAAATLANVNQGSLFDMMGADAHGSS 944

Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
             +  L   +      +   E+  +GFY SGH  D     +R+ 
Sbjct: 945 QQEPELVGAAPWGIREQLMQEKTAVGFYLSGHLFDEVAAEVRRF 988


>gi|167835967|ref|ZP_02462850.1| DNA polymerase III subunit alpha [Burkholderia thailandensis MSMB43]
          Length = 1095

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  +WL+     GL+ L+G   G I  A    +   A +    + ++F    Y+ LQR
Sbjct: 114  AELDANWLEGDLAAGLLALSGAQQGDIGLALAAGNEAAARRHAQRWSQVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            H   G + Y + Q V +A    LP+VAT+   +++ +D+ AH+  + ++   +++   R 
Sbjct: 174  HGQPGAEAYIQ-QAVTIAAELMLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + + + + +MV++F+DLP AL NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFTTEQFFRTQDDMVALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RL Q       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSQEGLEKRLVQLYPDEAEREAQRDKYSQRLDFECGTIKKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +    K D SL
Sbjct: 529  FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSL 588

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+      ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVEYPDMRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM + +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAQHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D     I ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCDVNGIAVLPPDINQSHYRFEPVAQADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGAL
Sbjct: 829  SCTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRIVNRRTIEALIRAGAL 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 889  DSLHANRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 946  LQEEKSALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1002 RGKMV 1006


>gi|121998235|ref|YP_001003022.1| DNA polymerase III subunit alpha [Halorhodospira halophila SL1]
 gi|121589640|gb|ABM62220.1| DNA polymerase III, alpha subunit [Halorhodospira halophila SL1]
          Length = 1183

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1070 (39%), Positives = 609/1070 (56%), Gaps = 58/1070 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E  P FVHL++HS +SL++G + +N  +        PA+AITD +NLF  ++F + A AA
Sbjct: 3    EDPPPFVHLRLHSEFSLVDGIVRINEAVSAAREAGMPAVAITDQSNLFGMVKFYRAALAA 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G++PIIG   D+ + D+       +        + LL     GY+ L  L+SR Y     
Sbjct: 63   GVKPIIGG--DVWLADDTVEFGYAR--------LTLLCRDRGGYRALSRLLSRAYREGAC 112

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184
                 I   WLQ     GL+ L+GG+ G I +A        A +     ++ FG D  Y+
Sbjct: 113  GDIPVIRREWLQ-ADAGGLLALSGGAQGDIGQALLRGDEATARRYAEEHRRTFGEDGFYL 171

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R  R  D       V LA   +LP+VATN+  F+  EDY+AH+V + +     +   
Sbjct: 172  ELHRLGRPGDERHLHAAVALAADEDLPVVATNDVRFMRPEDYDAHEVRVCIHQGRTLDDP 231

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +RPR  T   Y  + ++M   FSDLPEALE +V IA RCS  L++    LP F   E   
Sbjct: 232  NRPRHYTEQQYFADAADMAERFSDLPEALETSVRIAERCSVDLELDTNYLPDFPVPEGHT 291

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFL 358
            +     + LR ++  GL  RL Q  +A+   A +    Y +RLD EL VI +M F GYFL
Sbjct: 292  VA----SFLRAESERGLTQRLEQRGLAEDEDADEVEATYHRRLDHELAVIEQMGFPGYFL 347

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFI+WA+ N+IPVGPGRGSGAGS+ AYAL IT++DPLR+ LLFERFLNP+R+SMPDF
Sbjct: 348  IVADFIRWARDNHIPVGPGRGSGAGSLVAYALGITNLDPLRYDLLFERFLNPERVSMPDF 407

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC +RRDEVI YV ++YG E+V+QI T G++ A+A +RDVGR     +  +DR+ KL
Sbjct: 408  DVDFCMERRDEVIEYVSDRYGAEKVSQIATHGTMAARAVVRDVGRVYGHAFGYMDRIAKL 467

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP +    +  +A+  +   R     D ++  L++ ++ LEG+ R+   HA G+VI    
Sbjct: 468  IPFEIGMTLD-KALEQEEDLRAEYDNDENIRELIDTARSLEGMARNVGKHAGGVVIAPTD 526

Query: 539  LSQLVPMYRDV--RSDLP----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD----F 588
            L+   P+YRD   R D       T F+   +E  GL+KFDFLGL+TLT++  ++      
Sbjct: 527  LTDFSPLYRDPEEREDAEAWKVATHFDKDDVEAVGLVKFDFLGLRTLTIIDWTVQAVNRI 586

Query: 589  LAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            L QRG + +D+  IP DD  T+ LL    T  +FQLES GM++ ++ +QPD  EDI+ALV
Sbjct: 587  LEQRGERALDIDGIPLDDSATFDLLKRCATTAVFQLESRGMKELIKRLQPDSFEDIVALV 646

Query: 648  SLYRPGPIDNIVV--YNNRKNGKEKIVSI------HPLIDPMLKETQGVIIYQEQVMQIA 699
            +L+RPGP+ + +V  +  RK+G+  +         HP + P+L+ T GVI+YQEQV +IA
Sbjct: 647  ALFRPGPLQSGMVDDFVERKHGRSAVAGYPTRELHHPDLMPVLQPTYGVILYQEQVQRIA 706

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q+L+GYSL EAD+LRRAMGKK  EEM KQ+ +F+ GA   G+S+  A  IF+L+ KFA Y
Sbjct: 707  QVLAGYSLGEADLLRRAMGKKKPEEMAKQRAKFLEGAQARGLSEGHATGIFDLMEKFAGY 766

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA++SYQTAW+K H+P  F+A+ ++ +MDN +K+  F  +AR   ++++PP
Sbjct: 767  GFNKSHSAAYALLSYQTAWLKCHFPAPFMASVLSSDMDNTDKVVIFLDEARAMGLEVLPP 826

Query: 820  SVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKL 877
             VN     F+  D R I Y L AIKGVG +    ++ E  A  PF  + D C RVD+ + 
Sbjct: 827  DVNRSDKPFRAVDERTIVYGLGAIKGVGESALDAVLGERDAHGPFGDVFDLCRRVDTGRA 886

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--- 934
            NRRVLE+L  +G+LD    +R   +  +      A+ V +++     ++F          
Sbjct: 887  NRRVLEALCRSGSLDSLVPNRATGMAQIPAALAAAEQVTRDQAAGQTDLFGGPAEAVIAP 946

Query: 935  -SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-------- 985
                  + +        R   E+  LG + +GHP+D Y+  L  +     +         
Sbjct: 947  GGAGEEVAEEPEWPEEERLAAEKATLGLFLTGHPIDRYEHELPYLATDRLQRLASGAGGS 1006

Query: 986  --SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   RG ++  A +VV+ + + T  G R+  +T  +     E   FP
Sbjct: 1007 GGDGNGGRGRSVTAAGLVVALRVRSTSTGGRLATLTLDDRTGRIEVVLFP 1056


>gi|291280374|ref|YP_003497209.1| DNA polymerase III subunit alpha [Deferribacter desulfuricans SSM1]
 gi|290755076|dbj|BAI81453.1| DNA polymerase III, alpha subunit [Deferribacter desulfuricans SSM1]
          Length = 1160

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1052 (40%), Positives = 635/1052 (60%), Gaps = 48/1052 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL +H+ YSLL+GA+ ++ ++ K+  +   A+AITD   ++  ++F  +A A  I
Sbjct: 2    SKDFVHLHLHTQYSLLDGAIHISELMQKLKENGSKAVAITDHGTMYGIVDFYTQALANDI 61

Query: 68   QPIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            +PIIGC++ +  D + N     +    +     +VLL  T  G + L  LVS+ ++ +  
Sbjct: 62   KPIIGCEVYVAPDSRFNKNYDKKEDKNY----HLVLLAQTNTGLKNLQYLVSKAHI-EGF 116

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184
                RI    L +  ++GLI L+   +G   R       + A+K  L + ++ G D  ++
Sbjct: 117  YYKPRIDKELLAK-HSKGLIALSACLAGEPARKLLNEGYEAAKKAALEYYEIMGKDNYFL 175

Query: 185  NLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
             +Q + G +       ++++++    +PLVATN+  FL+ EDY +H VLM + +   ++ 
Sbjct: 176  EIQDN-GINEQNLVNKKLIEISKETGIPLVATNDCHFLNREDYYSHQVLMCIQYQQTLND 234

Query: 243  KDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             +R    + + Y+K+  EM   F+++ EAL NTV+IA RC+  +      LP +   E  
Sbjct: 235  PNRRDSHSSELYVKSPKEMWKSFNEVEEALINTVKIAERCNVSMTFGELHLPVYDVPEGY 294

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             ++      L + +  GL  RLA+  +    H++ Y +RL++EL +I    + GY+LIV 
Sbjct: 295  TLK----TYLEHISKEGLHKRLAKVPLE--LHSK-YYERLEYELKIIHEKGYDGYYLIVW 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI +A+KN IPVGPGRGSGAGS+ AYA+ ITDIDP+++ LLFERFLNP+R SMPDFDID
Sbjct: 348  DFINYARKNKIPVGPGRGSGAGSLVAYAVGITDIDPIKYKLLFERFLNPERKSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR+EVI YV+NKYGH+RVAQIITFG L A+  +RDVGR L++P   VD++ K+IP 
Sbjct: 408  FCMNRREEVIDYVRNKYGHDRVAQIITFGKLLARGVIRDVGRVLEIPLKTVDKIAKMIPE 467

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   +  +A+  DS  +    +      LL+ + KLEGL R+A  HAAG+VI D+PL +
Sbjct: 468  KPGLTLK-KALEMDSELKPNIESIEKGKELLDHALKLEGLLRNAGMHAAGVVIADKPLVE 526

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
             VP+ +  ++D  VTQF    +EK GL+KFDFLGLK LT++  +   + + +    D+S 
Sbjct: 527  YVPLCKG-QNDEVVTQFEKDTLEKVGLVKFDFLGLKNLTVIDYASKLIRETKDSDFDISS 585

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD +T+ LL++  T G+FQLESSGM+  L+ ++P   EDIIALV+LYRPGPI + ++
Sbjct: 586  IPLDDKKTFELLSSGETTGVFQLESSGMKNLLKKLKPTTFEDIIALVALYRPGPIGSGML 645

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G +++    P ++ +LKET G+I+YQEQVMQIAQ+++GYSL  AD+LRRAMG
Sbjct: 646  DDFVKRKHGLQEVTYPLPELEEILKETYGIIVYQEQVMQIAQIVAGYSLGSADLLRRAMG 705

Query: 719  KKIKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            KK  EEM K +E F        I GA K G  + IA  IF+L+AKFA+YGFNKSH+AAYA
Sbjct: 706  KKKPEEMAKHREIFLYGDEKLGIEGAVKRGFDEKIASEIFDLMAKFAEYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTA++K HYPVE++AA ++ E++  +K+  F  + ++  I+++ P +N    DF +
Sbjct: 766  MVSYQTAYLKAHYPVEYMAALLSNELEKGDKVVGFIDECKKMGIKVLKPDINESFRDFII 825

Query: 831  GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              + I + L AIK VG      I+ E   +  + S+ D C RVD + +NR+VLESL+ AG
Sbjct: 826  TGDSIRFGLGAIKNVGFGAIDEIIKERKTNGKYKSIYDLCKRVDLRTVNRKVLESLIKAG 885

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE---KGTFSDKITLEKFS-- 944
            ALD FG +R Q LQ LD+  +  Q   K +  K+E I   E   K    D+I  E +   
Sbjct: 886  ALDSFGKNRRQHLQVLDDAIESGQ---KEQQLKNEGIITIEDILKENGIDEIEEEHYPDV 942

Query: 945  ---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                EN  ++FE E  VLGFY + HPL  Y  IL  +  K   +   T   N I +  +V
Sbjct: 943  EEMPENELLKFEKE--VLGFYLTNHPLVNYSNIL-DIFTKRSSDIETTDENNLIMVGGIV 999

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +   T+   R+ +VT  +     +   FP
Sbjct: 1000 KGVKNYITKTNERMAFVTLEDLEGTMDVVVFP 1031


>gi|299066194|emb|CBJ37378.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum CMR15]
          Length = 1173

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/991 (41%), Positives = 599/991 (60%), Gaps = 38/991 (3%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SP FVHL++HS YS+++G + L+  +   AAD   A+A+TD  N F  + F ++A   G+
Sbjct: 3   SPRFVHLRLHSEYSVVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKGV 62

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           +P++G         ++ +TN  +   P+   ++LLV   +GY  L  L++R +L +Q + 
Sbjct: 63  KPVVGA--------DVWITNHDERDKPS--RLLLLVRNKQGYLNLCMLLARAWLSNQHRG 112

Query: 128 SVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
              I   W  E G E      GL+ L+G   G I  A    +  +A K    + ++F   
Sbjct: 113 RAEIAPEWFGEPGVEAAPMATGLLALSGAMGGDIGMALANGNEALARKLATQWSQVFPAS 172

Query: 182 LYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            Y+ LQR  + G + Y + Q V+LA + +LP+VAT+   F++ +++ AH+  + +A   +
Sbjct: 173 FYIELQRAGNAGTEAYVQ-QAVKLAASMQLPVVATHPVQFMTPDEFTAHEARVCIAEGDL 231

Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           ++   R R  T D Y K + EM ++F+D+P AL NTV+IA+RC+  L++  P LP F   
Sbjct: 232 LANPRRTRRFTTDQYFKTQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTP 291

Query: 299 ECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
           +   +    ++ L   A  GLE R   L      +     +Y  RL+FE   I +M F G
Sbjct: 292 DGMSL----DDYLVQLAKEGLEKRMEVLFPDEAVREAKRPEYYARLEFETGTIIKMGFPG 347

Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
           YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 348 YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407

Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
           PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD +
Sbjct: 408 PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467

Query: 476 CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            KLIP  P   V+L+ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 468 AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527

Query: 535 GDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLA 590
               L+   P+Y     D  V +Q++   +E  GL+KFDFLGL TLT+L   ++ +  L 
Sbjct: 528 APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587

Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 + S IP  D   + +L T  T+ +FQLES GM+  L+  +PD  EDIIALV+LY
Sbjct: 588 PSKADWNCSHIPLTDKAAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647

Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           RPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  A
Sbjct: 648 RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
           D+LRRAMGKK  EEM + +E F  GA+K+G+S   A  IF+L+ KFA YGFNKSHAAAYA
Sbjct: 708 DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPSVNTPCVDFK 829
           +++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DAR  N + ++PP +N     F 
Sbjct: 768 LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNALAVLPPDINASQYRFT 827

Query: 830 VGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D + I Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV A
Sbjct: 828 PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887

Query: 889 GALDCFGYSRMQLLQS--LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
           GA D    +R QLL S  L       +    N+ +  + + + +      ++  E  +  
Sbjct: 888 GAFDSLNANRAQLLVSIGLAMEAAEQKAAAANQVSLFDLMGSDDAEQHRPELLDE--APW 945

Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
           ++  + + E++ LGFY SGH  D  +  +R+
Sbjct: 946 STKRKLQEEKQALGFYLSGHLFDECRDEVRR 976


>gi|330984024|gb|EGH82127.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 1201

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/998 (41%), Positives = 585/998 (58%), Gaps = 67/998 (6%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFVHL VHS YSL +  + +  ++ K     QPAIAI+DT+N+F+ ++    A A G++P
Sbjct: 2   SFVHLSVHSEYSLHDSLIRVKPLMSKAKEFNQPAIAISDTSNMFATIKAYNGAMAMGVKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY---LLDQGK 126
           II  ++ I            KTP     +I L     +GYQ L EL+SR Y     D   
Sbjct: 62  IIAAEVQI------------KTPRLPASTITLYCMNNDGYQALCELISRGYNEAPRDDQN 109

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             V I L WL +  T+ LI L+GG  G I R    N   +  + L  +K LFGDRL++ L
Sbjct: 110 HPV-IPLEWL-DGQTDNLIALSGGREGEIGRLMMSNRKALVAEALSDYKLLFGDRLFIEL 167

Query: 187 QR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--- 241
           QR  H   DRY + + V LA  H+LP+VATN S FL   D++ H+V +A+A    V    
Sbjct: 168 QRIGHPADDRYVK-EAVSLAIEHKLPVVATNPSRFLDPADFQTHEVRIAIAQGRSVRALR 226

Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
           +   P  T   Y K+  EM  +FSD+P+A++NTV IA  CS  L +    LP F   +  
Sbjct: 227 EDLNPPCTQHQYFKSSEEMTELFSDIPQAIQNTVRIAALCSVDLTLGKSFLPSFPAPD-- 284

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVIARMKFSGY 356
             +  E + L   +  GLE RLA   + K     D     Y +RL FEL VI +M F GY
Sbjct: 285 --KMSEADYLEKTSYEGLEERLAY--LFKDKDEIDAKRPTYVERLKFELGVINQMGFPGY 340

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
           FLIVADFI+WAK N+IPVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMP
Sbjct: 341 FLIVADFIKWAKANDIPVGPGRGSGAGSLVAYSLGITDLDPLPYDLLFERFLNPERVSMP 400

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           DFD+DFC D+RD+VIRYV + YGH+ V+QIIT+G++ AK  +RDV RAL  PY   +++ 
Sbjct: 401 DFDVDFCMDKRDQVIRYVADAYGHDAVSQIITYGTMAAKMVVRDVARALGYPYRLGNQIS 460

Query: 477 KLIPNDPAHPVSLQAIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
           +LIP +P   ++L+   D     +  L  D  V  ++  + KLEG+ R    HA G++I 
Sbjct: 461 QLIPKEP--DITLEKALDRVPTLKVMLDTDHDVKNIMLHALKLEGITRQVGKHAGGVLIS 518

Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-- 593
              L+Q  P Y D      V+Q++   +EKAGL+KFDFLGL+ LT++  +L  +  R   
Sbjct: 519 PGALTQFTPTYCDPDGGSLVSQYDKDDVEKAGLVKFDFLGLRNLTIIDHALKSINGRREK 578

Query: 594 ---VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
               K+D++ I   D  TY ++    T  +FQLESSGM+  ++ +QPDC ED+IALV+L+
Sbjct: 579 EGLAKIDINGIDLTDKLTYEMIQRCETTAVFQLESSGMKNLIKRIQPDCFEDLIALVALF 638

Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLS 703
           RPGP+ + +V  + +RK+G+ ++   HP      + P+L+ T G+I+YQEQVMQIAQ+++
Sbjct: 639 RPGPLQSGMVDDFIDRKHGRAELSYPHPNYQYAGLKPVLEPTYGIILYQEQVMQIAQVMA 698

Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
           GY+L  AD+LRRAMGKK  EEM KQ+  F+ G  KNGI   +A NIF+L+ KFA YGFNK
Sbjct: 699 GYTLGGADMLRRAMGKKKPEEMAKQRGGFVEGCGKNGIDAHLAGNIFDLVEKFAGYGFNK 758

Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
           SH+AAYA++++QTAW+K HYP +F+AA ++ +MDN +K+ +F  + R   ++I  P  N 
Sbjct: 759 SHSAAYALVAFQTAWLKAHYPADFMAAVLSSDMDNTDKVVRFIHECRNMGVEIQTPHANH 818

Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVL 882
               F   +  I Y L AIKG G + ++ ++ +  A   +  + DF  R     LN+  +
Sbjct: 819 SQWHFTSHNGVILYGLGAIKGFGESASKAMLADRKAGGSYQDIIDFLRR---NSLNKSSI 875

Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK----I 938
           E+ + AG  D  G  R +LL          + + KN            +G   D     +
Sbjct: 876 EACIHAGMFDFSGLQRSELLAIYPTAASAGKQLRKNVN----------QGMLFDMDLPVV 925

Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
              + +V +  VR   E++ LG Y +GHP   Y+  L+
Sbjct: 926 KRTETTVMDDDVRLAGERKHLGLYLTGHPYAKYQTRLK 963


>gi|17546924|ref|NP_520326.1| DNA polymerase III subunit alpha [Ralstonia solanacearum GMI1000]
 gi|17429224|emb|CAD15912.1| probable dna polymerase III (alpha chain) protein [Ralstonia
           solanacearum GMI1000]
          Length = 1173

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/991 (41%), Positives = 600/991 (60%), Gaps = 38/991 (3%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SP FVHL++HS YS+++G + L+  +   AAD   A+A+TD  N F  + F ++A   G+
Sbjct: 3   SPRFVHLRLHSEYSVVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKGV 62

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           +PI+G         ++ +TN  +   P+   ++LLV   +GY  L  L++R +L +Q + 
Sbjct: 63  KPIVGA--------DVWITNHDERDKPS--RLLLLVRNKQGYLNLCMLLARAWLSNQHRG 112

Query: 128 SVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
              +   W  E G E      GL+ L+G   G I  A    +  +A K    + ++F   
Sbjct: 113 RAEVAPEWFGEPGVEEAPMATGLLALSGAMGGDIGMALANGNEALARKLATQWSQVFPAS 172

Query: 182 LYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            Y+ LQR  + G + Y + Q V+LA + +LP+VAT+   F++ +D+ AH+  + +A   +
Sbjct: 173 FYIELQRAGNAGTEAYVQ-QAVKLAASMQLPVVATHPVQFMTPDDFTAHEARVCIAEGDL 231

Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           ++   R R  T D Y K + EM ++F+D+P AL NT +IA+RC+  L++  P LP F   
Sbjct: 232 LANPRRTRRFTTDQYFKTQDEMCALFADIPSALANTAQIAQRCNLTLELGKPKLPLFPTP 291

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
           +   +    ++ L + A  GLE R+A        +     +Y  RL+FE   I +M F G
Sbjct: 292 DGMSL----DDYLVHLAKDGLEKRMAVLFPDEAVREAKRPEYYARLEFETGTIIKMGFPG 347

Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
           YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 348 YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407

Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
           PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD +
Sbjct: 408 PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467

Query: 476 CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            KLIP  P   V+++ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 468 AKLIPFKPGKLVTIEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527

Query: 535 GDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLA 590
               L+   P+Y     D  V +Q++   +E  GL+KFDFLGL TLT+L   ++ +  L 
Sbjct: 528 APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRTLD 587

Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 + S IP  D   + +L T  T+ +FQLES GM+  L+  +PD  EDIIALV+LY
Sbjct: 588 PSRADWNCSHIPLTDKAAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647

Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           RPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  A
Sbjct: 648 RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
           D+LRRAMGKK  EEM + +E F  GA+K+G+S   A  IF+L+ KFA YGFNKSHAAAYA
Sbjct: 708 DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPSVNTPCVDFK 829
           +++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DAR  N + ++PP +N     F 
Sbjct: 768 LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNGLAVLPPDINASQYRFT 827

Query: 830 VGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D + I Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV A
Sbjct: 828 PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887

Query: 889 GALDCFGYSRMQLLQS--LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
           GA D    +R QLL S  L       +    N+ +  + + + +      ++  E  +  
Sbjct: 888 GAFDSLNANRAQLLVSIGLAMEAAEQKAAAANQVSLFDLMGSDDAEQHRPELLDE--APW 945

Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
           ++  + + E++ LGFY SGH  D  +  +R+
Sbjct: 946 STKRKLQEEKQALGFYLSGHLFDECRDEVRR 976


>gi|167569335|ref|ZP_02362209.1| DNA polymerase III subunit alpha [Burkholderia oklahomensis C6786]
          Length = 1174

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1025 (40%), Positives = 611/1025 (59%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    EGL+ L+G   G I  A    +   A +    + K F    Y+ LQR
Sbjct: 114  AELDASWLEGEFAEGLLALSGAQQGDIGLALAAGNEAAARRHAERWAKTFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   F++ +D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAVTIAAELKLPVVATHPLQFMTADDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T D + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFTTDQFFRTQDDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RL Q       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSKEGLEKRLVQLYPDEAEREAQRDTYCQRLDFECGTIKKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 529  FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPASFQMLKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+      ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVEYPDMRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG++   A  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHRELFREGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D     + ++ P +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLSPDINQSHYRFEPVAEADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGAL
Sbjct: 829  SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGAL 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 889  DSLHANRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGEPAHQHALVDEPAWDDKRR 945

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 946  LQEEKSALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1002 RGKMV 1006


>gi|121534258|ref|ZP_01666082.1| DNA polymerase III, alpha subunit [Thermosinus carboxydivorans Nor1]
 gi|121307028|gb|EAX47946.1| DNA polymerase III, alpha subunit [Thermosinus carboxydivorans Nor1]
          Length = 1129

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/1036 (39%), Positives = 623/1036 (60%), Gaps = 37/1036 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+GA  + +++ +      PA+AITD  N++  ++F ++A AAGI+P
Sbjct: 2    SFVHLHVHTEYSLLDGASRIKHLVCRAKELGMPALAITDHGNMYGVIDFYKQARAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQ 127
            IIGC++ +  +   + T  +G+  +     +VLL  T +GY+ LIELVSR     +G   
Sbjct: 62   IIGCEVYVAPRSRWEKTAVEGEAYY----HLVLLAETDQGYRNLIELVSRAN--SEGFYY 115

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNL 186
              R+    L+   T GLI L+G  +G I         + AE     ++ +FG R  ++ L
Sbjct: 116  KPRVDKELLRTYST-GLICLSGCIAGEIPALLLKGDFEGAEALAHEYRDIFGPRNFFLEL 174

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++ +  +Q+  LA    L LVATN+  ++ + D E HDVL+ +     V    R
Sbjct: 175  QDHNLPEQKQVNAQLALLADKLGLGLVATNDIHYVDKGDAECHDVLLCIQTGKTVDDSGR 234

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ---VHAPILPRFIEKECD 301
             R    + YLK+ +EM ++F   P+A+ NT+ IA RC   ++   +H P  P       D
Sbjct: 235  MRFPNNEFYLKSPAEMAALFGWRPDAITNTLVIAERCQVSIEFGKLHLPEFPVPAGLTAD 294

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +        LR      L  R   G       AQ   +RL++EL VI +M +S YFLIV 
Sbjct: 295  EY-------LRRLCFERLPRRYPTGT------AQA-TERLEYELAVIQKMGYSSYFLIVW 340

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF+ +A+  +IPVGPGRGS AGS+ +Y L IT+IDPL++ LLFERFLNP+R++MPD DID
Sbjct: 341  DFVNFARSRDIPVGPGRGSAAGSIVSYLLGITNIDPLKYGLLFERFLNPERVTMPDIDID 400

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR ++I YV  +YG + VAQIITFG++ A+AA+RDVGRAL +PY +VDR+ KLIP 
Sbjct: 401  FCYERRGQIIDYVAKRYGADHVAQIITFGTMAARAAVRDVGRALNLPYGEVDRIAKLIPT 460

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +  +A+   +  RE    D  V +LL+++  +EGL RHASTHAAG+VI    L+Q
Sbjct: 461  ELGTTLQ-RALEVSTELRELYETDDKVRKLLDLAMAVEGLPRHASTHAAGLVIAKEKLTQ 519

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
             VP+ ++       TQ++   +E+ GL+K D LGL+TLT++  +L+ + + RG+++D+  
Sbjct: 520  YVPL-QNSTEGFVTTQYDKDRVEEIGLLKMDLLGLRTLTVIGDTLELVRKSRGIRLDIDA 578

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD +T  LL    TLG+FQ+ES+GM   ++ ++P+  +D+I LV+LYRPGP+ + +V
Sbjct: 579  IPLDDAKTCQLLANGETLGVFQMESAGMTNLVKELKPERFDDLIPLVALYRPGPLGSGMV 638

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   ++GK+++   HPL++P+LKET GVI+YQEQVMQIA +++G++L +AD+LRRAMG
Sbjct: 639  ADFIAGRHGKKEVQYPHPLLEPILKETFGVILYQEQVMQIASVMAGFTLGQADLLRRAMG 698

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  E ++ Q++ F+ GA++ GI    A NIFEL+A FADYGFNKSH+AAYA+++YQTA+
Sbjct: 699  KKKHEVLEAQRDNFMRGAAERGIDSATAANIFELMAHFADYGFNKSHSAAYALVAYQTAY 758

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K HYP EF+AA +T  M   EK+  + ++ R+  I ++PP +N    +F V    I + 
Sbjct: 759  LKAHYPQEFMAALLTSVMGANEKVGLYIEECRRLGIPVLPPDINASRENFTVDGQAIRFG 818

Query: 839  LAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            LA +K VG     +I+ A  +   F SL DFC+RVD + +N+RV+ESL+  GA D  G+ 
Sbjct: 819  LAGVKNVGDAAIANIIAARDSGGKFTSLVDFCTRVDMRTVNKRVIESLIKCGAFDSLGWR 878

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R QLL  LD   + A   +++  +    +F+ E    +D I                E+ 
Sbjct: 879  RSQLLAILDQAVEAAASRQRDLASGQMGLFSDETVNSADDIVPPPLEELPKEQLLAMEKE 938

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            + GFY +GHPLD Y+  L        +E +    G  + +A ++   ++  T+ G  + +
Sbjct: 939  MTGFYVTGHPLDKYRDQLNNY--TKIDELMQYADGQTVCIAGLIAGAKRITTKGGEMMCF 996

Query: 1018 VTFSEPAKEYEANFFP 1033
             T  +   + E   FP
Sbjct: 997  ATLEDFTNQVEVVIFP 1012


>gi|254480316|ref|ZP_05093564.1| DNA polymerase III, alpha subunit subfamily, putative [marine gamma
            proteobacterium HTCC2148]
 gi|214039878|gb|EEB80537.1| DNA polymerase III, alpha subunit subfamily, putative [marine gamma
            proteobacterium HTCC2148]
          Length = 1135

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1025 (39%), Positives = 595/1025 (58%), Gaps = 43/1025 (4%)

Query: 33   LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
            + ++A    PA+A+TD +N +  ++  + A +AG+QPI G  L +   D+         P
Sbjct: 1    MSRVAELGMPAVAVTDVSNFYGLVKVHKSAFSAGVQPIFGTDLRVLDADD---------P 51

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
              + P + LL     GY  L  L+SR Y   Q      +  +WL+E   EG+I L+ G+ 
Sbjct: 52   EKSYP-LCLLAMNQTGYHNLTLLISRSYTEGQYLGVPYVQKAWLEEC-AEGVIALSAGAR 109

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPL 211
            G + +A     S++A  R   +  L+  R Y+ L R  R  D       V LA   + P+
Sbjct: 110  GDVGQAIIGEKSELAVARAKYWMALYPQRFYLELHRTGREGDETHLHGAVNLAAQLQCPV 169

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEA 270
            VATN+  FL   ++EAH+  + +     +    R R  T   YL++  EM  +F+D+PEA
Sbjct: 170  VATNDVRFLDASEFEAHEARVCIGEGRTLDDPRRARSYTEQQYLRSPEEMTELFADIPEA 229

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ--GAI 328
            L NTV+IARRC+ +L++  P LP +   E   +    +   R  +  GL+ RL     + 
Sbjct: 230  LANTVQIARRCNVVLELGKPYLPDYPVPEGMTM----DEFFRQLSHDGLDARLEALFDSS 285

Query: 329  AKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
            A  + A+   YR+RL+FEL  I +M F GYFLIV DFI+WAK+++IPVGPGRGSGAGS+ 
Sbjct: 286  ADDFPAKQKQYRERLEFELETIIQMGFPGYFLIVMDFIRWAKQHDIPVGPGRGSGAGSLV 345

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AYA+ ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI YV + YG E V+QI
Sbjct: 346  AYAMEITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDYVADTYGREAVSQI 405

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
            ITFG++ AKA +RDV R     Y   D+L KLIP +    +  +A+  +   +E    D 
Sbjct: 406  ITFGTMAAKAVVRDVARVQGKSYGLADKLSKLIPFEVGMTLE-KALEQEEALKEFLAEDE 464

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
                + +++++LEG+ R    HA G+VI    L+   P++ D      VTQ++   +E A
Sbjct: 465  QAQEIWDMAEQLEGVTRGVGKHAGGVVIAPSKLTDFSPLFCDESGSGLVTQYDKGDVEDA 524

Query: 567  GLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            GL+KFDFLGL+TLT++  ++  +           +D+  IP DD  ++ LL +  T  +F
Sbjct: 525  GLVKFDFLGLRTLTIIDWAVKMINTVRDTDGQAPLDIMQIPLDDQPSFTLLKSAKTTAVF 584

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIV-----SI 674
            QLESSGM+  +E +QPDC EDI+ALV+L+RPGP+ + +V N  NRK+G+E++        
Sbjct: 585  QLESSGMKDLIERLQPDCFEDIVALVALFRPGPLQSGMVDNFINRKHGREELSFPDAKWQ 644

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            H  + P+L+ T G+I+YQEQVMQIAQ L+GY+L  AD+LRRAMGKK  EEM KQ+  F  
Sbjct: 645  HEWLKPILQPTYGIILYQEQVMQIAQELAGYTLGGADMLRRAMGKKKPEEMAKQRTIFEE 704

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP  F+AA M+ 
Sbjct: 705  GAKSKGVDSELAMRIFDLVEKFAGYGFNKSHSAAYALVSYQTCWLKTHYPAPFMAAVMSS 764

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHI 853
            E+DN +KI  F  + ++  + +  P VN     F V     I Y L AIKG+G      I
Sbjct: 765  ELDNTDKIVVFVDECKRMKLSLKLPDVNEGQYMFTVNAQGDIIYGLGAIKGLGEGPVEII 824

Query: 854  MEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            +     D PF  L DFC+R D +K+NR+ +E+L+ +GALD  G +R  L+ S+++  K A
Sbjct: 825  LATRETDGPFTDLFDFCARTDPRKVNRKAIEALIRSGALDSLGETRWVLMASMEDALKAA 884

Query: 913  QWVEKNRTNKHENIF-----AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +    NR    +++F     + E GT        K        R   E+  LG Y +GHP
Sbjct: 885  EQSASNRDAGIDDLFGEVVPSQENGTEDVYAGFRKVRPWTDKERLGGERDTLGLYITGHP 944

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            +D Y+  +RK   K   +     +GN + L  ++++ +   T++G+ +  +T  + + + 
Sbjct: 945  IDEYQVEIRKFAPKRIVDVRPDKQGNQL-LVGLIMATRTMNTQRGT-MAVLTLDDSSAQM 1002

Query: 1028 EANFF 1032
            E   F
Sbjct: 1003 EVTLF 1007


>gi|152980633|ref|YP_001352224.1| DNA polymerase III alpha subunit [Janthinobacterium sp. Marseille]
 gi|151280710|gb|ABR89120.1| DNA polymerase III alpha subunit [Janthinobacterium sp. Marseille]
          Length = 1152

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/1038 (39%), Positives = 611/1038 (58%), Gaps = 47/1038 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SP F+HL++HS YS+++G + +++++   AAD QPA+AI+D  NLF  ++F ++A + GI
Sbjct: 3    SPQFIHLRLHSEYSIVDGLIRIDDVIQAAAADMQPALAISDLANLFGMVKFYKEARSNGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+GC        ++ ++N      P+   ++LLV   +GY +L EL+S+ +L +  + 
Sbjct: 63   KPIVGC--------DVWISNDNDRDKPS--RLLLLVKNKDGYLQLCELLSKAWLTNLHRG 112

Query: 128  SVRICLSWLQEI---GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
               I   WL+++   G  GLI+L+G   G +  A    +   AE+    + +LF    Y+
Sbjct: 113  RAEIRPEWLEQVAADGKNGLIVLSGAHFGDVGIAIDNGNLGAAERCAQRWAELFPGHFYI 172

Query: 185  NLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             +QR       G+ R    Q   LA    LPLVAT+   FL  E++ AH+    ++   +
Sbjct: 173  EVQRAGQPNMDGHVR----QASVLAAKLGLPLVATHPVQFLGLEEFTAHEARTCISEGEI 228

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R       K ++EM  +F+D+P AL+N+VEIA+RC+ +L++  P LP F   
Sbjct: 229  LANPRRIKRFNEQQRFKTQAEMAELFADMPNALQNSVEIAKRCNLVLELGKPKLPNFPTP 288

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   I    +  L  +A  GL+ R+        A+  H + Y+ RL FE + I +M F G
Sbjct: 289  DGSSI----DEFLVKEAQRGLDQRMEHLYPDPAAREKHRERYQARLKFETDTIIKMGFPG 344

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 345  YFLIVADFIKWAKNNGVPVGPGRGSGAGSLVAYSLLITDLDPLQYNLLFERFLNPERVSM 404

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ+ RD VI+YV+++YG + V+QI TFG++ AK A+RDVGR L   Y+  D +
Sbjct: 405  PDFDIDFCQEGRDRVIQYVKDQYGKDAVSQIATFGTMAAKGAVRDVGRVLDFGYNFCDGI 464

Query: 476  CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP  P   V++  AI ++    E    +  V +LL+++Q++EG+ R+   HA G++I
Sbjct: 465  SKLIPFKPGKLVTISDAIKEEPLLAERLENEEEVKQLLDLAQQVEGIARNIGMHAGGVLI 524

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
                L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L +++ ++     
Sbjct: 525  APGKLTDFCPLYTQGGDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIKDLDP 584

Query: 594  VKVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
               D +L  +P +D  +Y LLT   T+ +FQLES GM+  L+  +PD  EDIIALV+LYR
Sbjct: 585  AMADFALEKLPLNDRPSYELLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYR 644

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+D I  +  RK+G E+     P  + +L ET G+++YQEQVMQ+AQ++ GYSL  AD
Sbjct: 645  PGPMDLIPDFCRRKHG-ERFEYPDPRTESILSETYGIMVYQEQVMQMAQVIGGYSLGGAD 703

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM + +E F +GASKN +S   A  IF+L+ KFA YGFNKSHAAAYA+
Sbjct: 704  LLRRAMGKKKAEEMAEHRELFRAGASKNDLSAEKADEIFDLMEKFAGYGFNKSHAAAYAL 763

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVN------TP 824
            +SY TA++K H+P  F+AA+++L MD+ +KIK   +DA     + ++PP +N      TP
Sbjct: 764  LSYHTAYLKAHHPAAFMAANLSLAMDDTDKIKILVEDAIDICGLSLLPPDINQSDYRFTP 823

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
                     +I Y L A+KG G      ++EA  ++PF  L DF  RVD +++NRR ++S
Sbjct: 824  VGVPGKKATQIRYGLGAVKGSGKGAIDAVIEARKERPFTDLFDFAKRVDKRQINRRTIDS 883

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ AGA DCF   R  LL S+          +        ++F  +           K S
Sbjct: 884  LIRAGAFDCFDVDRAILLASV--AFAMECAEQAEAAANQVSLFGGDDSDLETPPEYVKVS 941

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   +   E+  LGFY SGH  + Y    R+   +    S+   R    R  A V+S 
Sbjct: 942  PWSDKQKLTEEKAALGFYLSGHLFNAYADEARRFA-RAKLSSLEPSR--EPRTIAGVISG 998

Query: 1005 QQKKTRKGSRIGWVTFSE 1022
             + +  +  RI  VT  +
Sbjct: 999  LRTQMTQRGRITIVTLDD 1016


>gi|167562082|ref|ZP_02354998.1| DNA polymerase III subunit alpha [Burkholderia oklahomensis EO147]
          Length = 1105

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1025 (40%), Positives = 611/1025 (59%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    EGL+ L+G   G I  A    +   A +    + K F    Y+ LQR
Sbjct: 114  AELDASWLEGEFAEGLLALSGAQQGDIGLALAAGNEAAARRHAERWAKTFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   F++ +D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQ-QAVTIAAELKLPVVATHPLQFMTADDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T D + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFTTDQFFRTQDDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RL Q       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSKEGLEKRLVQLYPDEAEREAQRDTYCQRLDFECGTIKKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 529  FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPASFQMLKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+      ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVEYPDMRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG++   A  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHRELFREGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D     + ++ P +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLSPDINQSHYRFEPVAEADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGAL
Sbjct: 829  SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGAL 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 889  DSLHANRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGEPAHQHALVDEPAWDDKRR 945

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 946  LQEEKSALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1002 RGKMV 1006


>gi|282599926|ref|ZP_05972365.2| DNA polymerase III, alpha subunit [Providencia rustigianii DSM 4541]
 gi|282567163|gb|EFB72698.1| DNA polymerase III, alpha subunit [Providencia rustigianii DSM 4541]
          Length = 1144

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1040 (40%), Positives = 609/1040 (58%), Gaps = 54/1040 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K+A    PA+AITD  NL   ++F   A +AG++PIIG    ++ + 
Sbjct: 1    MIDGLAKTGPLVKKVAEMGMPALAITDFTNLCGLVKFYGAAHSAGVKPIIGADFYMESE- 59

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
              ++ +        V  + +L    EGYQ L  L+S  Y    G     I   WL +   
Sbjct: 60   --QLGDD-------VAHLTVLARNNEGYQNLTLLISEAYQKGYGAIGPTIHRDWLVK-HK 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EGLI+L+GG  G + +     +  + ++ +  ++  F    Y+ L R  R  +       
Sbjct: 110  EGLILLSGGRKGDVGQFLLRGNQALVDECIEFYETHFPGSYYLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            ++LA    LP+VATN   F+   D++AH++ +A+     +    RP+  +P  YL++  E
Sbjct: 170  IELATLRGLPVVATNEVCFIESRDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQYLRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEALEN+VEIA+RC+  +++    LP+F   +      E E+ L   +  GL
Sbjct: 230  MCELFADIPEALENSVEIAKRCNVTIRLGEYFLPKFPTGDM-----ETEDYLVMCSKKGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y +RLD ELNVI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLEFLFPDEKERAVKRIEYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL   LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLELDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLE-KAFEVEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     +D++ IP +D +++ +
Sbjct: 524  QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKNLEPIDIAAIPLEDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
            L    T  +FQLES GM+  ++ +QPD  ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVKWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFKDGAIKNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V D   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  + D C+RVD KK+NRRV+E L+ AGA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARQQGGIFKEIFDLCARVDIKKINRRVMEKLIMAGAFDHLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953
             SL++  K A        ++H    A  +G     +      VE+S          V  E
Sbjct: 884  SSLEDALKAA--------DQHAKAEAIGQGDMFGVLAEAPEQVESSYASVPKWPEQVVLE 935

Query: 954  NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             E+  LG Y +GHP+  Y   I R       ++   T RG    +  +V+S +   T++G
Sbjct: 936  GERETLGLYLTGHPITRYLSEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRG 995

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +RIG  T  + +   +   F
Sbjct: 996  NRIGICTLDDRSGRLDIMLF 1015


>gi|254190629|ref|ZP_04897136.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pasteur
            52237]
 gi|157938304|gb|EDO93974.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pasteur
            52237]
          Length = 1174

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/1025 (40%), Positives = 613/1025 (59%), Gaps = 40/1025 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ LQR
Sbjct: 114  AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGGEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + + + + +M ++F+DLP A  NTVEIA+RC+  L++  P LPRF   +   +  
Sbjct: 233  KRFTTEQFFRTQGDMAALFADLPSARANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GL+ RL Q       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 529  FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA 
Sbjct: 829  SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+    + A+  +         +F    G  + +  L      +   R
Sbjct: 889  DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D Y+  +R+       + +  ++ G +  +A ++ S + + T+
Sbjct: 946  LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1002 RGKMV 1006


>gi|91788754|ref|YP_549706.1| DNA polymerase III subunit alpha [Polaromonas sp. JS666]
 gi|91697979|gb|ABE44808.1| DNA polymerase III, alpha subunit [Polaromonas sp. JS666]
          Length = 1190

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1001 (41%), Positives = 593/1001 (59%), Gaps = 33/1001 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   ++ I+   AADQQPA+AITD +NLF  ++F ++   AG++P+
Sbjct: 19   FVHLRIHTEFSVVDGTNRIDEIVQAAAADQQPALAITDLSNLFGTVKFYKEGRGAGVKPL 78

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + + +         GK        ++LLV    GY  L EL++R +  +  +    
Sbjct: 79   IGADVWVQVP--------GKDAAAPAARLLLLVQNHRGYLNLSELLTRAWTRNVVRDQAV 130

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            I L WL+E+  EGLI L+G   G + +A        A +  L    LF  R Y+ LQR  
Sbjct: 131  IKLEWLEEL-NEGLIALSGAQGGAVGQALLQGDDARALECALHLAGLFPHRFYLELQRAQ 189

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  D    +  VQLA   +LP+VAT+   FL+ +DYEAH+  + +A   ++    R R  
Sbjct: 190  RPDDERHVAAAVQLAARLKLPVVATHPVQFLTYDDYEAHEARVCIAEGEILGNTRRVRKF 249

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K+ ++M  +F+D+P AL NT+EIARRC+  L++  P+LP +   E + ++   +
Sbjct: 250  TREQYFKSAAQMTQLFADVPSALANTLEIARRCNLKLELGKPMLPDYPTPEVEGVRMPID 309

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R+ +  GLE RLA     +    Q    Y +RL+FE+N I +M F GYFLIV DFI 
Sbjct: 310  AYFRHASFEGLEERLAHLYPNEALRDQKRPVYVERLEFEINTILKMGFPGYFLIVGDFIN 369

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 370  WAKNNGCPVGPGRGSGAGSLVAYALRITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQS 429

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV++KYGH+ V+QI+TFG++ A+AA+RDVGR L  PY   D + KLIPN P  
Sbjct: 430  NRDRVIDYVKDKYGHDAVSQIVTFGTMAARAAIRDVGRVLDFPYGFCDGISKLIPNKPGQ 489

Query: 486  PVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             V+LQ              A+  +    E    +  V  LL++++KLEGL R+   HA G
Sbjct: 490  AVTLQLLPAERKKNDKMVYALEAEPVLAERERKEEDVHTLLDLARKLEGLTRNVGMHAGG 549

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I    L+   P+Y    S   V+QF+   +E  GL+KFDFLGL TLT+L+ + +F+ Q
Sbjct: 550  VLIAPGKLTDFCPLYLQPGSGSAVSQFDKNDVEAIGLVKFDFLGLATLTILEIAREFIIQ 609

Query: 592  RG-VKVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R   + D     +  +D   Y L     T  +FQ ES GM++ L+  +P+ +ED+IA+ +
Sbjct: 610  RHPSQKDFKFENLSLNDARVYALFAEGNTEAVFQFESIGMQRMLKDAKPNRLEDLIAMNA 669

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  Y  RK GKE      P + P+L+ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 670  LYRPGPMDLIPTYIARKQGKEVPEYPDPRVKPILEETYGIMVYQEQVMQTAQILGGYSLG 729

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK ++EM  Q++ F  GA  NG+++  A  +F+L+ KFA YGFNKSH+AA
Sbjct: 730  GADMLRRAMGKKDEKEMASQRDIFRKGAGVNGLTQEKADEVFDLMEKFAGYGFNKSHSAA 789

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+++Y TAW+K HY  EF AA+MT+EMD+ +K+K    DA++  IQ   P +N     F
Sbjct: 790  YALLAYHTAWLKVHYTAEFFAANMTVEMDDTDKLKILFGDAQKMGIQFESPDINRGDYRF 849

Query: 829  K-VGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886
            + +    + Y L A+KG G      I+ A  +  PF SL DFC RVD  KLN+R +E+L+
Sbjct: 850  EPISATAVRYGLGAVKGTGQQAIAAIVAARQEGGPFTSLYDFCVRVDRSKLNKRTVEALI 909

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
              GA D    +R +LL S+D   ++A   E N         +      + +  L +    
Sbjct: 910  KGGAFDNLHLNRAELLASVDRAFEFAAATEANANQGGLFDMSDSHAASTQEPPLVEAVPF 969

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                R   E+  +GFY SGH  D  +  +R+   +  E+ +
Sbjct: 970  GVKARLVLEKTAIGFYLSGHLFDEVEAEVRQFAKRKIEDLI 1010


>gi|221067306|ref|ZP_03543411.1| DNA polymerase III, alpha subunit [Comamonas testosteroni KF-1]
 gi|220712329|gb|EED67697.1| DNA polymerase III, alpha subunit [Comamonas testosteroni KF-1]
          Length = 1177

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/1003 (39%), Positives = 581/1003 (57%), Gaps = 53/1003 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL++H+ +S+++G   +N ++   A D Q A+AITD NNLF  ++F ++    G++P+
Sbjct: 2   FVHLRLHTEFSVVDGTTRVNAMIKAAAEDGQVAMAITDFNNLFGGIKFYREGRGKGVKPL 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           +G ++ ++          G  P    PS +++LV + +GY  + EL++R +  +  +   
Sbjct: 62  LGAEIVLE--------GLGDAP----PSRVIVLVQSRQGYHNIAELLARGWTRNVVRDQA 109

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
           +    WLQE+G EGLI+L+G  +GP+  A      + A +       +F  R Y+ LQR 
Sbjct: 110 QHKWEWLQELG-EGLIVLSGAQAGPVGIALTRGDEKGAAEIAQRLATMFPHRFYIELQRA 168

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
            R  D       V+LA    LP+VAT+   +   +DYEAH+  + +A   ++    R R 
Sbjct: 169 GRPDDESHVLAAVKLASRLNLPVVATHPIQYAKPDDYEAHEARVCIAEGEILGNAKRVRK 228

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            T D Y K  +EM  +F D+P A+ENTVEIARRCS  L++  P LP F       +    
Sbjct: 229 FTRDQYFKTAAEMEQLFCDIPSAIENTVEIARRCSLTLELGNPQLPNFPVPAGMSM---- 284

Query: 308 ENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
           +   R+++  GLE RL      A  +      Y +RL+FEL  I +M F GYFLIV+DFI
Sbjct: 285 DEFFRHESYQGLEERLVHLYPDAAKRDAQRARYVERLEFELGTIMKMGFPGYFLIVSDFI 344

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           +WAK N  PVGPGRGSGAGS+ AY L +TD+DPL ++LLFERFLNP+R+SMPDFD+DFCQ
Sbjct: 345 KWAKANGCPVGPGRGSGAGSLVAYVLKVTDLDPLEYNLLFERFLNPERVSMPDFDVDFCQ 404

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RD VI YV+++YG + V+QI TFG++ A+AA+RDVGR L M Y+  D + KLIPN P 
Sbjct: 405 QNRDRVIDYVKDRYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPG 464

Query: 485 HPVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
             V+L+              AI ++    E    +  V  L+E++Q LEG+ R+   HA 
Sbjct: 465 LHVTLKYPPNPPKEGDKYTYAIKEEPILAERIEREEDVKTLIEMAQSLEGMTRNIGMHAG 524

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           G+VI    L+   P+Y+   S   V  ++   +E  GL+KFDFLGL TLT+L+ + +F+ 
Sbjct: 525 GVVIAPGRLADFCPLYQQPGSTSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIM 584

Query: 591 QRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
           +R           IP DD+ TY L +   T  +FQ ES GM+Q L+  +P  +ED+IAL 
Sbjct: 585 KRHKGQENFQFENIPLDDYPTYKLFSDGKTEAVFQFESRGMQQMLKEAKPSRLEDLIALN 644

Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
           +LYRPGP+D I  +  RK+G+E +   HPL++ +L ET G+++YQEQVMQ AQ+L GYSL
Sbjct: 645 ALYRPGPMDLIPTFIARKHGQEVVEYPHPLVESVLAETYGIMVYQEQVMQTAQVLGGYSL 704

Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             AD+LRRAMGKK  EEM K +  F  GA+KNG+S+  A  +F+L+ KFA YGFNKSHAA
Sbjct: 705 GGADLLRRAMGKKKVEEMVKHRGIFREGAAKNGLSEEKADEVFDLMEKFAGYGFNKSHAA 764

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
           AY++++Y T W+K HY  EF   +MT+EMDN +K+K   +DA +  I    P VN     
Sbjct: 765 AYSLLAYHTGWLKVHYTAEFYCGNMTVEMDNTDKLKVLYEDALKMGITFEMPDVNRGVHR 824

Query: 828 FK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK----------PFDSLEDFCSRVDSKK 876
           F+ V D  I Y L AIKG G      I+ A   +          PF SL DFC RVD  +
Sbjct: 825 FEPVTDKVIRYGLGAIKGTGQAAIEAIVAARNGEGTGPNGHETGPFKSLFDFCLRVDRSR 884

Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA--QWVEKNRTNKHENIFAHEKGTF 934
           +N+R +E+L+  GA D    +R  L+ +LD    +A       ++    + +     G+ 
Sbjct: 885 INKRTVEALIKGGAFDSIDMNRASLMATLDTAFGFAATSIANADQGGLFDMMGDDALGSS 944

Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
           + +  +          +   E+  +GFY +GH  D  +  +R+
Sbjct: 945 TAEPPMADVLPWGVKEKLTLEKTAIGFYLTGHLFDEVEAEVRR 987


>gi|296133826|ref|YP_003641073.1| DNA polymerase III, alpha subunit [Thermincola sp. JR]
 gi|296032404|gb|ADG83172.1| DNA polymerase III, alpha subunit [Thermincola potens JR]
          Length = 1146

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/1039 (38%), Positives = 617/1039 (59%), Gaps = 36/1039 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  F+HL VH+ YSLL+GA  + +++   A     A+A+TD  ++F  ++F +    AGI
Sbjct: 2    AADFIHLHVHTEYSLLDGAARIRDLVSAAAEKGMKALAVTDHGSMFGVIDFYKACKKAGI 61

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +PI+GC++ +    M D     +           +VLL     GY+ L+ +VS  Y   +
Sbjct: 62   KPILGCEVYVAPRSMDDREPGRDDANY------HLVLLAENETGYKNLLHIVSEAY--TR 113

Query: 125  G-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182
            G     R   + L++  +EGLI L+    G I  A     S  A      ++ +FG    
Sbjct: 114  GFYYKPRTDKAALRK-HSEGLIALSACLGGEIATAIVNGQSDKARAAAREYEDIFGKGNF 172

Query: 183  YVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            ++ LQ H G +  R    ++V++     +PLV TN+  ++ + D E  DVL+ +     +
Sbjct: 173  FLELQDH-GLENQRMVNMELVKIGRELNIPLVVTNDVHYVRKSDAEVQDVLLCIGTGRTM 231

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
               DR    T + YLK+  EM  +  + PEAL NTV IA RC+         LP ++  E
Sbjct: 232  EDADRMEFGTSEFYLKDAREMALLAGEYPEALANTVNIAARCNVEFDFSQNYLPDYMIPE 291

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               +    E+ LR   + GL+ R            ++ R+RL++EL VI  M F GYFLI
Sbjct: 292  GHTV----ESYLRQLCLDGLKKRYPNAG-------EEVRRRLEYELQVINDMGFPGYFLI 340

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DF+++A++  I VGPGRGS AGS+ AY L IT+IDPL++ LLFERFLNP+R++MPD D
Sbjct: 341  VWDFVRFAREKGILVGPGRGSAAGSLVAYTLGITNIDPLKYDLLFERFLNPERVTMPDID 400

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC ++R+EVIRYV  +YG +RVAQIITFG++ A+AA+RDVGRAL MPY++VDR+ K+I
Sbjct: 401  IDFCYEKREEVIRYVIERYGADRVAQIITFGTMAARAAIRDVGRALNMPYAEVDRVAKMI 460

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +    +  +A+      RE    +P V +L+++++ +EG+ RHASTHAAG+VIG  PL
Sbjct: 461  PGELGMTLD-KALEASPELRELYETEPKVHKLVDMARAIEGMPRHASTHAAGVVIGREPL 519

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
            ++ +P+YR     +  TQF  + +E+ GL+K D LGL+TLT++  +++ +    G ++D+
Sbjct: 520  TRYLPLYRS-SDGVVTTQFAKETVEEIGLLKMDLLGLRTLTVIGDAVNIIKHTTGDEIDI 578

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY +L     +G+FQLESSGMR  L+ ++P+ ++DIIALV+LYRPGP+ + 
Sbjct: 579  DNIPLDDRATYEMLGRGDAIGVFQLESSGMRAILKELKPEVLDDIIALVALYRPGPLGSG 638

Query: 659  VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V  +  RK+G+ +I  +HP ++P+LK+T GVI+YQEQVM+IA  L+G++L EAD+LRRA
Sbjct: 639  MVEDFIRRKHGQSEIKYLHPALEPILKDTYGVILYQEQVMRIASDLAGFTLGEADLLRRA 698

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  E +   + +FI GA KN I +TIA  IF+L+  FA YGFNKSH+AAYA++SYQT
Sbjct: 699  MGKKKPEVIAGLRNQFIEGARKNNIEETIAGQIFDLMEYFAGYGFNKSHSAAYALVSYQT 758

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K +YPV ++AA +T    + +K+  + ++ ++  I I+PP +N   V+F V  ++I 
Sbjct: 759  AYLKANYPVAYMAALLTSVAGSSDKVAVYIEECKRMGIDILPPDINESLVNFTVVGDKIR 818

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            + LAA+K VG     HI+   + K F SL DFC R + + + +RV+ESL+  GA D    
Sbjct: 819  FGLAAVKNVGRQAIEHIIAVRSKKKFASLLDFCERAEHRVVTKRVIESLIKGGAFDSLTG 878

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG--TFSDKITLEKFSVENSSVRFEN 954
            +R QLL+ LD   ++A   +K+ +    ++F   +G  +F  ++ L              
Sbjct: 879  NRRQLLEGLDRCLEWAAKRQKDLSTGQISLFDVYEGDSSFGGEVPLPPVPDFPQHELLAM 938

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+ +LG Y SGHPL+ Y+  L +       + V       + +  ++   ++  TR+G  
Sbjct: 939  EKEMLGLYISGHPLEQYRRELAEKTTATTAQLVEMQDQEEVVIGGIIAGMRKITTRRGET 998

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            +  +   +     E   FP
Sbjct: 999  MLLMNLEDLVGSVEVIVFP 1017


>gi|83746496|ref|ZP_00943547.1| DNA polymerase III alpha subunit [Ralstonia solanacearum UW551]
 gi|207743808|ref|YP_002260200.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
           IPO1609]
 gi|83726827|gb|EAP73954.1| DNA polymerase III alpha subunit [Ralstonia solanacearum UW551]
 gi|206595208|emb|CAQ62135.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
           IPO1609]
          Length = 1176

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/991 (40%), Positives = 600/991 (60%), Gaps = 38/991 (3%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SP FVHL++HS YS+++G + L+  +   AAD   A+A+TD  N F  + F ++A   G+
Sbjct: 3   SPRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKGV 62

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           +P++G         ++ +TN  +   P+   ++LLV   +GY  L  L++R +L +Q + 
Sbjct: 63  KPVVGA--------DVWITNHDERDKPS--RLLLLVRNKQGYLNLCTLLARAWLSNQHRG 112

Query: 128 SVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
              I   W  E G E      GL+ L+G   G +  A    +  +A K    + ++F   
Sbjct: 113 RAEIAPEWFDEPGVEDAPLSTGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQA 172

Query: 182 LYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            Y+ LQR    G + Y + Q V+LA + +LP+VAT+   F++++D+ AH+  + +A   +
Sbjct: 173 FYIELQRAGQAGTEAYIQ-QAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDL 231

Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           ++   R R  + + Y K + EM ++F+D+P AL NTV+IA+RC+  L++  P LP F   
Sbjct: 232 LANPRRTRRFSTEQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTP 291

Query: 299 ECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
           +   +    ++ L + A  GLE R   L   A  +     +Y  RL+FE   I +M F G
Sbjct: 292 DGMSL----DDYLVHLAKDGLEKRMEVLFPDAAVREAKRPEYYARLEFETGTIIKMGFPG 347

Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
           YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 348 YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407

Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
           PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD +
Sbjct: 408 PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467

Query: 476 CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            KLIP  P   V+L+ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 468 AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527

Query: 535 GDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLA 590
               L+   P+Y     D  V +Q++   +E  GL+KFDFLGL TLT+L   ++ +  L 
Sbjct: 528 APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587

Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 + S IP +D   + +L    T+ +FQLES GM+  L+  +PD  EDIIALV+LY
Sbjct: 588 PSKADWNCSHIPLNDKPAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647

Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           RPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  A
Sbjct: 648 RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
           D+LRRAMGKK  EEM + +E F  GA+K+G+S   A  IF+L+ KFA YGFNKSHAAAYA
Sbjct: 708 DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPSVNTPCVDFK 829
           +++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DA   N ++++PP +N     F 
Sbjct: 768 LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFT 827

Query: 830 VGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D + I Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV A
Sbjct: 828 PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887

Query: 889 GALDCFGYSRMQLLQS--LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
           GA D    +R QLL S  L       +    N+ +  + +   +      ++  E  +  
Sbjct: 888 GAFDSLNDNRAQLLVSIGLAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDE--APW 945

Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
           ++  + + E++ LGFY SGH  D  +  +R+
Sbjct: 946 STKRKLQEEKQALGFYLSGHLFDECRDEVRR 976


>gi|207723766|ref|YP_002254164.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
           MolK2]
 gi|206588970|emb|CAQ35932.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
           MolK2]
          Length = 1174

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/991 (40%), Positives = 600/991 (60%), Gaps = 38/991 (3%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SP FVHL++HS YS+++G + L+  +   AAD   A+A+TD  N F  + F ++A   G+
Sbjct: 3   SPRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKGV 62

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           +P++G         ++ +TN  +   P+   ++LLV   +GY  L  L++R +L +Q + 
Sbjct: 63  KPVVGA--------DVWITNHDERDKPS--RLLLLVRNKQGYLNLCTLLARAWLSNQHRG 112

Query: 128 SVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
              I   W  E G E      GL+ L+G   G +  A    +  +A K    + ++F   
Sbjct: 113 RAEIAPEWFDEPGVEDAPLATGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQA 172

Query: 182 LYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            Y+ LQR    G + Y + Q V+LA + +LP+VAT+   F++++D+ AH+  + +A   +
Sbjct: 173 FYIELQRAGQAGTEAYIQ-QAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDL 231

Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           ++   R R  + + Y K + EM ++F+D+P AL NTV+IA+RC+  L++  P LP F   
Sbjct: 232 LANPRRTRRFSTEQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTP 291

Query: 299 ECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
           +   +    ++ L + A  GLE R   L   A  +     +Y  RL+FE   I +M F G
Sbjct: 292 DGMSL----DDYLVHLAKDGLEKRMEVLFPDAAVREAKRPEYYARLEFETGTIIKMGFPG 347

Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
           YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 348 YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407

Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
           PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD +
Sbjct: 408 PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467

Query: 476 CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            KLIP  P   V+L+ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 468 AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527

Query: 535 GDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLA 590
               L+   P+Y     D  V +Q++   +E  GL+KFDFLGL TLT+L   ++ +  L 
Sbjct: 528 APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587

Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 + S IP +D   + +L    T+ +FQLES GM+  L+  +PD  EDIIALV+LY
Sbjct: 588 PSKADWNCSHIPLNDKPAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647

Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           RPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  A
Sbjct: 648 RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
           D+LRRAMGKK  EEM + +E F  GA+K+G+S   A  IF+L+ KFA YGFNKSHAAAYA
Sbjct: 708 DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPSVNTPCVDFK 829
           +++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DA   N ++++PP +N     F 
Sbjct: 768 LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFT 827

Query: 830 VGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D + I Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV A
Sbjct: 828 PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887

Query: 889 GALDCFGYSRMQLLQS--LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
           GA D    +R QLL S  L       +    N+ +  + +   +      ++  E  +  
Sbjct: 888 GAFDSLNDNRAQLLVSIGLAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDE--APW 945

Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
           ++  + + E++ LGFY SGH  D  +  +R+
Sbjct: 946 STKRKLQEEKQALGFYLSGHLFDECRDEVRR 976


>gi|153006392|ref|YP_001380717.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. Fw109-5]
 gi|152029965|gb|ABS27733.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 1217

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1087 (38%), Positives = 640/1087 (58%), Gaps = 91/1087 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL +H+ YSLL+GA+ + ++L  + A     +A+TD  NLF A++F +KA  AG++
Sbjct: 2    PDFVHLHLHTLYSLLDGAIRIKDLLKTVQAKGMKTVAVTDHGNLFGAVDFYKKAKDAGVK 61

Query: 69   PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            PI+G +  +  D   + +    G+        ++LL   AEG+  L  L S+ +  +   
Sbjct: 62   PIMGMEAYVAGDKGRHDRSERVGR-------HLILLAKNAEGWANLRFLSSKAFT-EGFY 113

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               RI    L++  ++GL+ LT   +G + R         A +    ++ +F     ++ 
Sbjct: 114  YDPRIDKQLLRD-HSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLE 172

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q +   ++    +++ QL     +PLVAT ++ ++S +D +AH+VLM +A +       
Sbjct: 173  VQSNGMREQLDVNAKLAQLGRDEGIPLVATADAHYVSRQDAKAHEVLMCIASNKTFQDPK 232

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R   D  ++++  +MV+   +  EA++NT+ IA  C+  LQ+    LPRF  +  D +
Sbjct: 233  RLRHETDGLFIQSPDDMVAALPEYREAIDNTIRIAEMCNVELQLGKSFLPRF--QLPDGV 290

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVAD 362
             +EE  E    A  GL+ R  +    K  H +D YRQRL+ EL VI +M FSGYFLIV D
Sbjct: 291  SEEEWIE--KLAKDGLDARFRE-IDGKYPHDRDAYRQRLEMELGVIKKMGFSGYFLIVQD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI W K++ IPVGPGRGSGAGS+ A++L ITD+DPLR++LLFERFLNP+R+SMPDFD+DF
Sbjct: 348  FINWGKQHQIPVGPGRGSGAGSIVAWSLRITDLDPLRWNLLFERFLNPERVSMPDFDVDF 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ+RRDEVI YV+ KYG + V QIITFGSL+A++ +RDV R + +P+++ D++ KL+P D
Sbjct: 408  CQNRRDEVIDYVREKYGKDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDKIAKLVP-D 466

Query: 483  PAH----PVSLQAIADDSRFREARLAD----PSV----------------DRLLEISQKL 518
            P      P+       D    E RL +    P+V                  LL+I+  L
Sbjct: 467  PVQGKTPPLKELVFGSDKMPAEPRLEELYKKPTVISQWVDEKGVQHTVTTKDLLDIAMSL 526

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R A  HAAG+VI D+PL   VP Y+D +S++ V+QF  + +E AGL+KFDFLGLKT
Sbjct: 527  EGLNRQAGLHAAGVVIADKPLWDYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKT 586

Query: 579  LTLLQKSLDFLAQRGVKV-DLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            LT++  +L  + Q   ++ D +   IP DD + Y L++   T G+FQ+ESSG  + +  M
Sbjct: 587  LTVIDDALRMVKQNHPEMKDFTAADIPIDDPKVYELISRGDTAGVFQMESSGFTEMVIKM 646

Query: 636  QPDCIEDIIALVSLYRPGPIDN--------IVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            +P   ED+IA  +LYRPGP+D         + VY +RK+G+EK+V  HP ++P+L+ T G
Sbjct: 647  KPSRFEDVIAAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVVYDHPKLEPVLEPTYG 706

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            VI+YQEQVMQI+Q+L+GYSL +AD+LRRAMGKK  E M K++  F++GA K+G+ + +A 
Sbjct: 707  VIVYQEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVKSGVDEKVAG 766

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             IF+L+ KFA YGFNKSH+AAY +++ QTAW+K HYPVEF+AA ++ E  N +K+     
Sbjct: 767  GIFDLMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHIS 826

Query: 808  DARQFNIQIMPPSVNTPCVDF-----------------KVGDNRIYYSLAAIKGVGTTTA 850
            +AR   I+++PP VN    DF                      RI + L A++GVG +  
Sbjct: 827  EARADGIEVLPPDVNESDKDFGAFGPAESARPSTGPGRAANKGRIRFGLGAVRGVGDSAV 886

Query: 851  RHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+EA A+  PF +L D  SRVDSKK+N++V+E+LV +GALD  G  R QL   +D+  
Sbjct: 887  QAILEARAEGGPFKTLYDLASRVDSKKINKKVVEALVKSGALDFEGVPRWQLFAGIDSAF 946

Query: 910  KYAQWVEKNRTNKHENIFAH-------------EKGTFSDKITLEKFSVENSSVRFENEQ 956
                  + +R +   ++F                 G    ++T+E++      VR   E+
Sbjct: 947  AAGASAQADRASGQASLFGALPAAQVEQKPRYPRPGDVVGELTVEEWP---ERVRLAFEK 1003

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRI 1015
              LGFY +GHPL  Y+  +R+              G+ + +  +V + +++  + KG+R 
Sbjct: 1004 EALGFYLTGHPLQGYEKEVRRYASTTCAAVANKRHGDKVSVVGVVAAVRERMNKEKGTRF 1063

Query: 1016 GWVTFSE 1022
            G++T  +
Sbjct: 1064 GFLTLED 1070


>gi|73542219|ref|YP_296739.1| DNA polymerase III subunit alpha [Ralstonia eutropha JMP134]
 gi|72119632|gb|AAZ61895.1| DNA polymerase III, alpha subunit [Ralstonia eutropha JMP134]
          Length = 1175

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1049 (40%), Positives = 616/1049 (58%), Gaps = 68/1049 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS YS+++G + L++ +   A+D   A+A+TD  N F  + F ++A   G+
Sbjct: 6    APRFVHLRVHSEYSVVDGIVRLDDAVKAAASDGMGALALTDLANAFGLIRFYKEARGGGV 65

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +P++G         ++ + N+     P    ++LLV    GY  L  L+SR +L +Q + 
Sbjct: 66   KPVVGA--------DVWLANEDDRDKPA--RLLLLVQDRVGYLNLCTLLSRAWLTNQHRG 115

Query: 128  SVRICLSWLQEIG------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
               I   W +E G        GLI L+G   G +  A    +   A +    +  +F  R
Sbjct: 116  RAEIEPGWFEEPGEGGQPLATGLIALSGAMGGDVGMALANGNVDAARRAAAHWAAVFPQR 175

Query: 182  LYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y+ LQR  H G D Y + Q V LA   +LP+VAT+   F++ +D+ AH+  + +A   +
Sbjct: 176  FYIELQRAGHPGTDAYVQ-QAVHLAAEMQLPVVATHPVQFMTPDDFTAHEARVCIAEGEL 234

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R R  T D Y K + EM ++F+D+P AL+N VEIARRC+  L++  P LP F   
Sbjct: 235  LANPRRTRRFTTDQYFKTQDEMCALFADIPSALQNAVEIARRCNLTLELGKPRLPLFPTP 294

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L   A  GLE RL+        +     +Y  RL+FE   I +M F G
Sbjct: 295  DGMSL----DDYLVFMAKDGLEKRLSVLFPNEAEREAKRPEYYARLEFETGTIIKMGFPG 350

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 351  YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVSM 410

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y  VD +
Sbjct: 411  PDFDIDFCQHGRDRVITYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDGI 470

Query: 476  CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP  P   V+++ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 471  AKLIPFKPGKLVTIEEAKKEEPLLTERENNEEEVRQLLELAQRVEGMTRNVGMHAGGVLI 530

Query: 535  GDRPLSQLVPMY-----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSL 586
                L+   P+Y      D  S + V+Q++   +E AGL+KFDFLGL TLT+L   ++ +
Sbjct: 531  APGRLTDFCPLYTQGGQNDGMSGV-VSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYI 589

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
              L       + S IP DD   + +L T  T+ +FQLES GM+  L+  +PD  EDIIAL
Sbjct: 590  RRLDPSKADWNCSHIPLDDGPAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIAL 649

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            V+LYRPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYS
Sbjct: 650  VALYRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYS 709

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM + +  F  GA KNG++   A +IF+L+ KFA YGFNKSHA
Sbjct: 710  LGGADLLRRAMGKKKPEEMAQHRVMFREGADKNGLNAEQADDIFDLMEKFAGYGFNKSHA 769

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA+++Y TAW+K H+P EF+AA+M+L MD+ +K+K   +D +   I ++PP VN    
Sbjct: 770  AAYALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYEDCKLNKIAVLPPDVNASEY 829

Query: 827  DFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             F   D + I Y L  IKG G      I+ A  ++PF  L DFC RVD +++NRR +E+L
Sbjct: 830  RFAPTDAKTIRYGLGGIKGSGQGAIEDILRAREERPFKDLFDFCERVDRRQVNRRTIEAL 889

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--------AHEKGTFSDK 937
            + AGA D    +R QLL S+    + A   +K  +    ++F        AH      + 
Sbjct: 890  IRAGAFDSLNNNRAQLLASVSIAMEAAD--QKAESANQVSLFDLMDDAGEAHRPELIDEP 947

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR---KMGIKGYEESVAT----- 989
                K ++       + E++ LG+YFSGH  D  +  +R   K  + G E+ V       
Sbjct: 948  AWTPKRTL-------QEEKQALGYYFSGHLFDACRDEVRRFVKSTLAGLEKEVQGNGGGF 1000

Query: 990  ---IRGNNIRLAAMVVSKQQKKTRKGSRI 1015
               +RG  I  A ++   + + T++G  I
Sbjct: 1001 GRDVRGKTI--AGVIAGVRTQMTQRGKMI 1027


>gi|134300158|ref|YP_001113654.1| DNA polymerase III DnaE [Desulfotomaculum reducens MI-1]
 gi|134052858|gb|ABO50829.1| DNA polymerase III catalytic subunit, DnaE type [Desulfotomaculum
            reducens MI-1]
          Length = 1225

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/1051 (38%), Positives = 627/1051 (59%), Gaps = 50/1051 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA  +N +  +       ++AITD   +F  ++F +     G++PI
Sbjct: 12   FVHLHVHTEYSLLDGASRINQMAKQAKESGMNSLAITDHGCMFGVVDFYKVCHKEGVKPI 71

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +GC++ +  +  +  T +        P+ +VLL    EGY+ L++LVS  Y  +      
Sbjct: 72   LGCEVYVAPRRRIDRTPK----LDDQPNHLVLLAENQEGYKNLLKLVSLGYT-EGFYYKP 126

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    LQ    +GLI L+   +G +      +  + A +    +  +FG D  ++ LQ 
Sbjct: 127  RVDKELLQRY-HKGLIALSACLAGEVADKILGSQPEKARQAAREYVDIFGKDNFFLELQD 185

Query: 189  HRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H GY   R    +++++A   ++PLVATN+  +L  E  E  DVL+ +     ++   R 
Sbjct: 186  H-GYQEQRTVNRELLKIAKELQIPLVATNDVHYLKREHAEIQDVLLCIQTGKSINTPGRM 244

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  + + YLK+  EM  +F+++P+AL NT+ IA RC   L+     LP F   E    + 
Sbjct: 245  KFESQEMYLKSPHEMNLLFAEIPDALSNTLRIAERCQVDLEFGKYHLPYFTVPE----ES 300

Query: 306  EEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                 LR K +        +GAI + G+ +   ++RL++ELNVI +M +  YFLIV DFI
Sbjct: 301  SPAQYLREKCL--------EGAIKRYGHCSGPVQERLEYELNVIGKMGYDEYFLIVWDFI 352

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A++  I VGPGRGS AGS+ +YAL IT+IDPL++ LLFERFLNP+R+SMPD DIDF  
Sbjct: 353  HYARQKGIAVGPGRGSAAGSIVSYALGITNIDPLKYGLLFERFLNPERISMPDIDIDFDY 412

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI Y+  KYG +RVAQIITFG++ A+AA+RDVGRAL MPY  VDR+ KL+P +  
Sbjct: 413  ERRGEVIEYIVQKYGTDRVAQIITFGTMAARAAIRDVGRALDMPYGDVDRVAKLVPTELN 472

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              ++ +A+      + A   DP V RL++ +  LEG+ RHASTHAAG+VI   PL + +P
Sbjct: 473  ITIA-KALTSSPDLKAAYDQDPEVKRLVDTAAALEGMPRHASTHAAGVVISREPLVEYLP 531

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            + +     L  TQF M  +E+ GL+K D LGL+ LT++ ++++ + Q +  K+D++ IP 
Sbjct: 532  LSK-TSDGLVTTQFPMTTVEELGLLKMDLLGLRNLTVISETVNLIEQIKETKLDINTIPL 590

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD  T+ +LT    +G+FQLESSGMR  L  ++P+  EDI+ALV+LYRPGP+ + +V  +
Sbjct: 591  DDQATFDMLTRGEGVGVFQLESSGMRNILRELKPNAFEDIVALVALYRPGPLGSGMVEDF 650

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK+G+ K+   HP ++P+LKET GVI+YQEQVM IA++++GYSL +AD LR+AMGKKI
Sbjct: 651  IQRKHGQNKVDYFHPDLEPILKETYGVILYQEQVMMIARIMAGYSLGQADALRKAMGKKI 710

Query: 722  KEEMDKQKERFISGAS--------KN--------GISKTIAVNIFELLAKFADYGFNKSH 765
             + M   ++ FI+G++        KN        G S+ +A  +F+L+  FA YGFNKSH
Sbjct: 711  AKIMGMHRDWFINGSTLDDKGKPLKNPIPGAVARGYSRQLAEKMFDLMEYFAGYGFNKSH 770

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA++SYQTA++K +YPVE++AA +T   DN +K+  +  + R+  IQ++PP +N   
Sbjct: 771  SAAYALVSYQTAYLKANYPVEYMAALLTSVRDNTDKVVLYIDECRRMGIQVLPPDINLSR 830

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLES 884
             +F   +  I + +AA+K VG    + I++    K PF    D C R+D++  NRRVLES
Sbjct: 831  ENFTAANGAIRFGMAAVKNVGWGAVQEIIQIREKKGPFTGFYDLCGRLDTRIANRRVLES 890

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEK 942
            L+ AGALD FGY R QLL  LD   ++A   +++R     ++F    E      ++ L  
Sbjct: 891  LIKAGALDAFGY-RSQLLAGLDTGLEHAARSQRDREQGQVSLFDLMSESPAQVMELKLPH 949

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                 S  + E E+  LG Y SGHPL  +  +L ++ ++          GNN+ +A ++ 
Sbjct: 950  VPRLTSRQQLEMEKEALGLYISGHPLSEFGWLLDQLEVQRVVHLAELPDGNNLLVAGIIS 1009

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + ++  +RKG  + ++T  +     E   FP
Sbjct: 1010 TIKRITSRKGDPMAFLTLEDLTGSCEVVVFP 1040


>gi|74316876|ref|YP_314616.1| DNA polymerase III subunit alpha [Thiobacillus denitrificans ATCC
            25259]
 gi|74056371|gb|AAZ96811.1| DNA polymerase III, alpha subunit [Thiobacillus denitrificans ATCC
            25259]
          Length = 1141

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/1026 (39%), Positives = 601/1026 (58%), Gaps = 55/1026 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL++H+ YS+++G + ++  + +      PA+ ++D +N F  ++F + A  AG++
Sbjct: 4    PRFIHLRLHTEYSIVDGLVRVDEAVKRAREIAMPALGVSDLSNTFGWVKFYRAARGAGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ ++N      P+   ++LLV   EGY+RL EL++R Y  +  +  
Sbjct: 64   PIFGC--------DVWVSNATDRNRPS--RLLLLVQHREGYRRLCELLTRAYQENLHRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  SWL E    GL+ L+GG  G + +A   +   VA      +  LF  R Y+ LQR
Sbjct: 114  AEIDPSWLAE-NNGGLLALSGGDGGNVAQAIIDDKPAVARAAAEAWAALFPGRYYLELQR 172

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              + +       ++ +     LP VAT+   FL+ +D++AH+  + +A   ++    RPR
Sbjct: 173  FGQAHTERLIDGLLDIGAELGLPAVATHPIQFLAADDFKAHEARVCIAEGMMLGDPRRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + Y K   EM ++F+DLPEAL N+VEIA+RC+  L++    LP F   +   +   
Sbjct: 233  PFTAEQYFKTPDEMAALFADLPEALANSVEIAKRCNLTLELGKSKLPDFPTPDGMGL--- 289

Query: 307  EENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             ++ +R +A  GL  R+A        +     +Y +RL+FEL  I +M F GYFLIVADF
Sbjct: 290  -DDYMRQRAYEGLAERMAHLYPDEAERAAKRPEYTERLEFELGTIIQMGFPGYFLIVADF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFDIDFC
Sbjct: 349  INWAKNNGVPVGPGRGSGAGSLVAYCLRITDLDPLAYDLLFERFLNPERVSMPDFDIDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QD RD VI+YV++KYGH  V+QI TFG++ AKA LRDVGR L +PY  VD+  KL+PN+ 
Sbjct: 409  QDGRDRVIQYVKDKYGHAAVSQIATFGTMAAKAVLRDVGRVLDLPYLFVDKFVKLVPNEL 468

Query: 484  AHPVSLQAIADDSRFREARLADPSVDR----------LLEISQKLEGLYRHASTHAAGIV 533
               +SL          EAR  +P +D           LL +++KLEG+ R+   HA G++
Sbjct: 469  G--ISLA---------EAREKEPQIDERARNEEELAELLPLAEKLEGITRNVGMHAGGVL 517

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            I    L+   P+Y+   SD  V+QF+   +E  GL+KFDFLGL+TLT+L +++ F+ +  
Sbjct: 518  IAPGKLTDFCPLYQAEGSDAAVSQFDKDDVEAIGLVKFDFLGLRTLTILAEAVRFVQRHE 577

Query: 594  VKVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             + D  L  +P DD   Y L     T  +FQ ES   +   + ++ DC EDIIAL++L R
Sbjct: 578  DRKDFRLEDLPLDDPAVYRLFADGNTTAVFQSESRSAKDLEKRLKGDCFEDIIALMALNR 637

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+ + +V  +  RK GK+K    HP ++P+LK T G+I+YQEQVM +AQ+L+GYSL  
Sbjct: 638  PGPLGSGMVDDFIARKQGKQKPEYFHPDLEPVLKSTYGIIVYQEQVMLVAQILAGYSLGG 697

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F+ GA K G+   IA  +F+L+ KFA+YGFNKSH+AAY
Sbjct: 698  ADMLRRAMGKKKPEEMAKQRAIFLEGADKRGVDVKIAERLFDLMEKFAEYGFNKSHSAAY 757

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+++Y TAW+K +YP EF+AA+M+ EM + +K++ F +D R   + ++PP +N     F 
Sbjct: 758  ALVAYHTAWLKAYYPAEFMAATMSSEMSDTDKVRIFYEDCRANGLTMLPPDINLSGYRFD 817

Query: 830  -VGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V    I Y L AIKG G      I+ E  A+ P+  L D   RVD + LNRRVLE+LV 
Sbjct: 818  PVSRTEIRYGLGAIKGSGEAAIGAIVAERGANGPYKGLFDLARRVDKRYLNRRVLEALVK 877

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVE 946
            AGA D     R  L+ S+    + A      R+     +F    +G   D + +  +  +
Sbjct: 878  AGAFDSLSDHRASLMASIGVALETAD--RAARSGGQVGLFGEVLEGGGEDLVDVPYWPEQ 935

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                +   E+  LG++FSGHP   Y   +     K   +S+   R   + LA + VS + 
Sbjct: 936  E---KLLQEKSALGYFFSGHPFTAYLAEVSGFA-KRRLDSLEPAR-EPVMLAGVAVSLRT 990

Query: 1007 KKTRKG 1012
            + TR+G
Sbjct: 991  QMTRRG 996


>gi|322435813|ref|YP_004218025.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX9]
 gi|321163540|gb|ADW69245.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX9]
          Length = 1176

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/997 (40%), Positives = 594/997 (59%), Gaps = 42/997 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  ++ ++  +    Q ++A+TD  N+F A+ F   A   GI+PI
Sbjct: 5   FTHLHLHTDYSLLDGACDVDKLVAHVDKIGQKSVAMTDHGNIFGAVHFFNSAKKKGIKPI 64

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +GC+L I   ++ +    G         +++L    EGY+ L+ L S   L    ++  R
Sbjct: 65  LGCELYICQAEDHRAKGDGDK----YNHLLVLAENQEGYRNLVRLTSEAALHGFYRKP-R 119

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
           +  ++L +  TEGLI  +G  +G + +         A+     F+++FG    ++ +Q H
Sbjct: 120 VSKNFLAK-HTEGLIGFSGCLAGEVSQHLMAGDYDKAKTTAGGFEEMFGRGNFFLEVQDH 178

Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
           +   D+     + ++    ++PL+ATN+S ++ ++D  AH+VL+ V   T  S  D  R 
Sbjct: 179 KLAPDKAVIEAMFRMEKDLDIPLIATNDSHYIEDQDARAHEVLLCV--QTAGSMNDPKRF 236

Query: 249 ---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              T + Y+K   EM   F D PE L  T++   RC+  L       P F     + ++ 
Sbjct: 237 KFDTEEFYIKTAEEMARFFPDHPEVLSRTMQFPERCNLELNKVDNPFPDFPVPAGETLES 296

Query: 306 EEENELRNKAVAGLEVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             E   R       E  +A     G + K  +  DY  RL+ E++ I  MKF GYF+IV 
Sbjct: 297 YFEQVCREGLKKRFETNVAHLERTGKLRK--NKTDYEARLNREIDCIKAMKFPGYFMIVW 354

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFI++A++  IPVGPGRGS AGS+ AY + ITD+DPL+  LLFERFLNP+R+SMPD DID
Sbjct: 355 DFIRYAREQGIPVGPGRGSAAGSLVAYCMEITDVDPLQNELLFERFLNPERISMPDIDID 414

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC +RR EVI YVQ KYG ++VAQIITF ++ AKAA++DVGRAL MPY +VDR+ K+I  
Sbjct: 415 FCMNRRGEVIEYVQRKYGKDQVAQIITFNTMAAKAAIKDVGRALDMPYGEVDRIAKMIQG 474

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                +S + + D+    +A  ++P +  L++ + +LEGL R A  HAAG+VI   PL++
Sbjct: 475 RIGVTIS-EVLKDNGPLTKAYESEPQIRELIDTALRLEGLVRGAGVHAAGVVIAPSPLTE 533

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSL 600
           LVP+ R  +S+  VT ++M  IEK GL+K DFLGL TLT++  +L  +   RG  VDL+ 
Sbjct: 534 LVPVTR-AKSEEIVTSYDMGAIEKMGLLKMDFLGLTTLTVIDDALKLIKLTRGEDVDLAT 592

Query: 601 IPFDDHETYHLLTTKG-TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
           I  DD +TY  +  +  T G+FQ ES GMR  L   +P+ +ED+ AL +LYRPGPI   +
Sbjct: 593 ISLDDAKTYEQVFHRALTSGVFQFESGGMRDVLRRYKPNTVEDLTALNALYRPGPIQGGM 652

Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           V  +  RK G+  +    P ++P+L+ET GV++YQEQVMQI+  L+G+SLS+AD+LRRAM
Sbjct: 653 VDEFIERKWGRRAVEYELPELEPILRETLGVMLYQEQVMQISNKLAGFSLSQADMLRRAM 712

Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
           GKK   EM KQK +F+ GA++N   K +A NIF+L+AKFA+YGFNKSH+AAYA+++Y TA
Sbjct: 713 GKKDVAEMTKQKVKFMEGAAENKHPKAVAGNIFDLMAKFAEYGFNKSHSAAYALLAYHTA 772

Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
           ++KTHY VEF+AA +T E    E + K+  + ++ NI ++PP V      F   D  I +
Sbjct: 773 YLKTHYTVEFMAALLTSETSKPENVVKYISECKEINIAVVPPDVQISQPSFTPQDGAIRF 832

Query: 838 SLAAIKGVGTTT------ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            LAAIK VG         AR  ++A     F SL +FC +VD + LN+RVLESL+ AGA+
Sbjct: 833 GLAAIKNVGHNAIQSIIDARGALQAEGKDGFASLWEFCEKVDLRLLNKRVLESLIKAGAM 892

Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE----- 946
           DCFG  R  ++ +LDN    AQ  +K++      +F    G F   +     +VE     
Sbjct: 893 DCFG-KRAAVMAALDNAMDRAQKAQKDKAAGQHGLFF--GGIFDSDVPAAGAAVEALPNA 949

Query: 947 ---NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
              +   R +NE+ VLGF+ SGHP+D Y+  LR M +
Sbjct: 950 PEWDEHTRLQNEKDVLGFFVSGHPMDKYREKLRNMKV 986


>gi|258546181|ref|ZP_05706415.1| DNA polymerase III, alpha subunit [Cardiobacterium hominis ATCC
            15826]
 gi|258518606|gb|EEV87465.1| DNA polymerase III, alpha subunit [Cardiobacterium hominis ATCC
            15826]
          Length = 1177

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1044 (39%), Positives = 608/1044 (58%), Gaps = 76/1044 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +  HL +HS +SL +  L +  I+D   +    AIA+TD NNL+ AL+F +KA AAGI+P
Sbjct: 3    ALTHLHIHSEFSLSDSILRVGEIVDFAKSQGAEAIALTDRNNLYGALKFYKKARAAGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC  D+ ++D+    NQ          ++LL    +G+  L ELVS  Y  DQ  Q V
Sbjct: 63   ILGC--DLTVRDSDGTDNQ----------LILLAQNLKGFIHLCELVSFAYQYDQDHQGV 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + +        EGLI L+GG  G + R      +Q AEKR   ++ +F DR Y+ L RH
Sbjct: 111  AVHIERFTPTQCEGLIALSGGIDGDLARFLRRRDAQGAEKRAAFWQGIFPDRYYLQLARH 170

Query: 190  ------RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                    +D  R++          +  VATN + F + +DY+ H+V + +++  + +  
Sbjct: 171  GQPGEAEYFDWCRDA-----GRKLGIAAVATNLACFPTADDYDVHEVRVCISNGWLRADD 225

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  T  ++  + + M   F+D P+ L NT  +A RC+  L +    LP F   +  +
Sbjct: 226  KRPRYFTQKYHFTSDAVMAERFADAPQILANTHAVAARCNLELTLGKNYLPDFPLPDGVN 285

Query: 303  IQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            I    E  L + A +GLE+RLAQ       +      Y +RL  EL VI +M F GYFLI
Sbjct: 286  I----ETFLIDSAKSGLELRLAQLFPDEAERAAKRAPYDERLAIELGVINQMGFPGYFLI 341

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFIQWAK ++IPVGPGRGSGAGS+ AYAL ITD+DPL + L FERFLNP+R+SMPDFD
Sbjct: 342  VADFIQWAKDHDIPVGPGRGSGAGSLVAYALKITDLDPLAYDLFFERFLNPERVSMPDFD 401

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC +RRDEVI YV +KYG +RV+QI T G++ AKA LRDVGR L +PY  VD+L   +
Sbjct: 402  VDFCMERRDEVIEYVSHKYGAQRVSQIATHGTMAAKAVLRDVGRVLGVPYPVVDKLVATV 461

Query: 480  PNDPAHPVSL-QAIADDSR-----------FREARLADPSVDRLLEISQKLEGLYRHAST 527
            P  P   ++L  A+   ++            +E    D  +  +++I  +LEGL R+   
Sbjct: 462  P--PVLGITLPDALGRSTKSQDKPELRSEAMQELYEKDEEMRDIIDIGLQLEGLARNVGK 519

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HA G+VI    L+    +Y +       TQF+   IE  GL+KFDFLGL+TLT++  +L 
Sbjct: 520  HAGGVVIAPTKLTDFSALYSESAGAGIATQFDKDDIEAMGLVKFDFLGLRTLTVIDWALG 579

Query: 588  FLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             +  R  +     +D++ +P DD +TY LL +  T  +FQLESSGM++ +  ++PD  ED
Sbjct: 580  HINARRTREGQPPLDIATLPLDDPQTYALLQSTRTTAVFQLESSGMKELIRKLRPDTFED 639

Query: 643  IIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            IIALV+L+RPGP+ + +V  + NRK+G  ++   HP ++ +L+ T GV++YQEQVMQ+AQ
Sbjct: 640  IIALVALFRPGPLGSGMVDDFINRKHGLAEVEYPHPDLEGILQTTYGVMVYQEQVMQVAQ 699

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             L+ YSL EAD LRRAMGKK  EEM + K+ F+S A + G+ +  A +IF+L+AKFA+YG
Sbjct: 700  KLANYSLGEADNLRRAMGKKKAEEMARNKDIFVSRAVERGVPEKQATDIFDLMAKFAEYG 759

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSH+AAYA++SYQTAW+K HYP E +AA +T E++ ++KI +F  +AR   + ++PP 
Sbjct: 760  FNKSHSAAYALLSYQTAWLKAHYPAELMAAVLTSEIEKIDKIVRFINEARDMGLTVIPPC 819

Query: 821  VNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
            +N     F V +   I Y L A+KGVG      ++E  A +  + SLED C R+D KKLN
Sbjct: 820  INRSQYTFTVSERGEIIYGLGAVKGVGEAAINILLEERAKNGDYTSLEDLCRRLDLKKLN 879

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            R+ LE+L+ AG+ D    +R  L  +++   K A+   +NR     ++F    G F D  
Sbjct: 880  RKTLETLIRAGSFDNIEPNRGALFAAVEQAIKLAEQHHRNRHQGQGDMF----GLFGDSS 935

Query: 939  TLEKFSV-----ENSSVR--FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
              +  S+     E   +R     E++ LG + S HP+D  +  L ++            R
Sbjct: 936  RDQPPSLIMNPEEAWDLRQTLAEEKQTLGLFLSAHPIDEARDTLLQIS-----------R 984

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRI 1015
            G N+      +   Q+ TR+G  I
Sbjct: 985  GRNLAQLQENMENWQRPTRRGDSI 1008


>gi|241663600|ref|YP_002981960.1| DNA polymerase III subunit alpha [Ralstonia pickettii 12D]
 gi|240865627|gb|ACS63288.1| DNA polymerase III, alpha subunit [Ralstonia pickettii 12D]
          Length = 1172

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/1039 (40%), Positives = 618/1039 (59%), Gaps = 52/1039 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SP FVHL++HS YS+++G + L++ +   A D   A+A+TD  N F  + F ++A   G+
Sbjct: 3    SPRFVHLRLHSEYSVVDGNVRLDDAVKAAAKDGMGALALTDLANAFGLVRFYKEARGKGV 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+G         ++ +TN  +   PT   ++LLV   +GY  L +L++R +L +Q + 
Sbjct: 63   KPIVGA--------DVWITNHDERDKPT--RLLLLVRDKQGYLNLCQLLARAWLSNQHRG 112

Query: 128  SVRICLSWLQEIGTEG------LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
               I   W  E G E       L+ L+G  +G I  A    +  +A K    + ++F   
Sbjct: 113  RAEIAPEWFDEPGVENAPLAAGLLALSGAMAGDIGVALANGNEALARKLATHWSRVFPGA 172

Query: 182  LYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y+ LQR  H G + Y + Q V+LA   +LP+VAT+   F++ +D+ AH+    +A   +
Sbjct: 173  FYIELQRAGHAGTEAYIQ-QAVKLASAMQLPVVATHPVQFMTPDDFTAHEARTCIAEGEL 231

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R R  T + Y K + EM ++F+D+P AL N V+IA+RC+  L++  P LPRF   
Sbjct: 232  LANPRRARRFTTEQYFKTQDEMCALFADIPSALANAVQIAQRCNLKLELGKPKLPRFPTP 291

Query: 299  ECDDIQKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            +   +    ++ L   A  GLE R+       A+ +   A+ Y  RL+FE   I +M F 
Sbjct: 292  DGMSL----DDYLVQLAKEGLEKRMEVLFPDEAVRESKRAE-YYARLEFETGTIIKMGFP 346

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+S
Sbjct: 347  GYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVS 406

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFDIDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD 
Sbjct: 407  MPDFDIDFCQHGRDRVIQYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDG 466

Query: 475  LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            + KLIP  P   V+L+ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++
Sbjct: 467  VAKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVL 526

Query: 534  IGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFL 589
            I    L+   P+Y     D  V +Q++   +E  GL+KFDFLGL TLT+L   ++ +  L
Sbjct: 527  IAPGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRML 586

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                   + S IP  D + + +L T  T+ +FQLES GM+  L+  +PD  EDIIALV+L
Sbjct: 587  DPSKADWNCSHIPLTDKKAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVAL 646

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  
Sbjct: 647  YRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGG 706

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM + +  F +GA+K+G+S   A  IF+L+ KFA YGFNKSHAAAY
Sbjct: 707  ADLLRRAMGKKKAEEMAEHRALFRAGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAY 766

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPSVNTPCVDF 828
            A+++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DAR  N + I+PP +N     F
Sbjct: 767  ALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNGLTILPPDINASQYRF 826

Query: 829  KVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               D + I Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV 
Sbjct: 827  APTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVR 886

Query: 888  AGALDCFGYSRMQLLQS--LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            AGA D    +R QLL S  L       +    N+ +  + +   +      ++  E    
Sbjct: 887  AGAFDSLNDNRAQLLASIGLAMEAAEQKAAAANQVSLFDLMSGDDAEQHRPELVDE--PA 944

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYK------------PILRKMGIKGYEESVATIRGN 993
             ++  + + E++ LGFY SGH  D Y+             + R++  KG           
Sbjct: 945  WSTKRKLQEEKQALGFYLSGHLFDEYRDEVRRFARTTLADLAREVTDKGNGGGYGNRDAR 1004

Query: 994  NIRLAAMVVSKQQKKTRKG 1012
            N  +A ++V ++ + T++G
Sbjct: 1005 NKTVAGVIVGQRTQMTQRG 1023


>gi|330817862|ref|YP_004361567.1| DNA polymerase III, alpha subunit [Burkholderia gladioli BSR3]
 gi|327370255|gb|AEA61611.1| DNA polymerase III, alpha subunit [Burkholderia gladioli BSR3]
          Length = 1179

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1031 (40%), Positives = 612/1031 (59%), Gaps = 51/1031 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++++   AAD Q A+A+TD  N F  + F Q+A   G++
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDLVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNHDDRDKPS--RLLLLVRDKAGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   WL+    +GL+ L+G   G I  A    +++ A +    + ++F    Y+ LQR
Sbjct: 114  AEVDAQWLESELGQGLLALSGAQQGDIGIALAAGNAEAARRHAQRWARVFPGGFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + +  +LA   +LP+VAT+   F+ +ED+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGGEAYVQ-EAAKLAAELQLPVVATHPLQFMGDEDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T +   + ++EM  +F+D+P A++NTVEIA+RC+  L++  P LP F   +   +  
Sbjct: 233  KRFTIEQRFRTQAEMAELFADIPSAVQNTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RL Q       +      Y QRL+FE N I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSQEGLEKRLVQLFPDEAERDAQRATYYQRLEFECNTIKKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  F+ +    K D SL
Sbjct: 529  FCPLYAQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERFIRRLDPAKADWSL 588

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+MTL MD+ +K+K    D     ++++PP +N     F+     D + 
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCELNGLKVLPPDINQSEYRFEPVAEADGKR 828

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I Y L A+KG G      I+ A  +   F  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 829  SKTIRYGLGAVKGSGQNAIEEILRARKEGGAFKDLFDFCERIDRRLVNRRTVEALIRAGA 888

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH------ENIFAHEKGTFSDKITLEKFS 944
             D    +R QL+ S+    + A   E N           E+  AH          L    
Sbjct: 889  FDVLTPNRAQLIASVPLAMEAADQAEANAMQAGLFDMGAESPHAH---------ALVDEP 939

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   R + E+  LGFY SGH  D Y+  +R+       E      G +  +A ++ S 
Sbjct: 940  AWDEKRRLQEEKGALGFYLSGHLFDAYREEVRRFARMKLGE---LKEGRDKLVAGVIASL 996

Query: 1005 QQKKTRKGSRI 1015
            + + T++G  I
Sbjct: 997  RTQMTQRGKMI 1007


>gi|152995316|ref|YP_001340151.1| DNA polymerase III subunit alpha [Marinomonas sp. MWYL1]
 gi|150836240|gb|ABR70216.1| DNA polymerase III, alpha subunit [Marinomonas sp. MWYL1]
          Length = 1158

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1066 (40%), Positives = 612/1066 (57%), Gaps = 77/1066 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SF+HL+VH+ +SL++G + +  +L        PA+AITD NNL   + F + A   GI
Sbjct: 2    STSFIHLRVHTEFSLVDGLVKIKGLLGTTEFMSMPAVAITDENNLCGFVRFYKGAMEKGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G  + +   D++    +            LL ++ +GY+ +I ++S+ Y L Q + 
Sbjct: 62   KPICGADVVVAEDDDVDSRYR----------FTLLATSNKGYKNIIAIISKGYQLGQVEG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   W+ E  +E +I L+G   G I         + A+ RL  +  +F +R YV LQ
Sbjct: 112  RPIIQREWI-ETHSEDVIALSGAGFGDIGYLLQKGRHEQAKNRLAHWMSIFPNRFYVELQ 170

Query: 188  R--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R    G + Y  + VV LA   + P+VATN+  FL  E++EAH+  + +     +    R
Sbjct: 171  RTSRPGEESYIHA-VVPLAGELDCPVVATNDVRFLKRENFEAHEARVCIHDGVTLDDPRR 229

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------- 293
             R  + + Y K   EM  +F D+PEALENTVEIA+RCS  + +    LP           
Sbjct: 230  KRRYSEEQYFKTPEEMAELFQDIPEALENTVEIAKRCSVDVLLGEYFLPDYPVPEGMTME 289

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             F  K   D   E  N L  K    +E R            Q+Y  RLDFEL +I +M F
Sbjct: 290  EFFSKLSYDGLIERFNFLTKKYGERIEKR-----------RQEYWDRLDFELTIINQMGF 338

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFLIV DFIQWAK N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+
Sbjct: 339  PGYFLIVMDFIQWAKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERV 398

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPDFDIDFC D RD VI YV   YG + V+QIITFG++ AKA +RDV R    PYS  D
Sbjct: 399  SMPDFDIDFCMDNRDRVIDYVSRTYGRDAVSQIITFGAMAAKAVVRDVARVQGKPYSLGD 458

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            +L KLIP +    +  +A+ ++    E    D     ++E++  LEG+ R+   HA G+V
Sbjct: 459  KLSKLIPFEIGMTLK-KALEEEPALPEFLAGDEDAAEVMEMAISLEGVVRNFGKHAGGVV 517

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ---KSLDFLA 590
            I    L    P+Y +      VTQ++   +E+AGL+KFDFLGLKTLT++    K++D + 
Sbjct: 518  IAPTKLIDFAPLYCEEDGSGLVTQYDKNDVEEAGLVKFDFLGLKTLTVVDWAVKNIDAIN 577

Query: 591  QRGVK--VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            +   K  +D+SLI  +D  TY LL    T  +FQLES GM++ ++ + P   EDIIALV+
Sbjct: 578  ELEGKPPLDISLIDLEDRSTYDLLKRAETTAVFQLESRGMKELIKKLLPSRFEDIIALVA 637

Query: 649  LYRPGPIDNIVV--YNNRKNGKEKIVSIHP------LIDPMLKETQGVIIYQEQVMQIAQ 700
            LYRPGP+ + +V  + NRK+G+ ++   HP      LI P+L+ T G+I+YQEQVMQIAQ
Sbjct: 638  LYRPGPLGSGMVDDFINRKHGRAELAFPHPDYQHQDLI-PVLEPTYGIILYQEQVMQIAQ 696

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +L+ +SL  AD+LRRAMGKK  E M +Q+  F+ GA KN I K ++ NIF+L+ KFA YG
Sbjct: 697  VLAKFSLGGADLLRRAMGKKKPEVMAEQRLIFMEGALKNNIDKDLSGNIFDLMEKFAGYG 756

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSH+AAYA++SYQTAW+K HYP  F+AA ++ +M N +KI  F ++ R   + +  P+
Sbjct: 757  FNKSHSAAYALVSYQTAWLKNHYPAPFMAAVLSADMQNTDKIVIFIEECRSMKLALELPN 816

Query: 821  VNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            VN     F V     I Y L AIKGVG      I+EA  D PF+ + DFC RV  +K+N+
Sbjct: 817  VNESVFKFTVNPKGAIVYGLGAIKGVGEGPIDAIVEARKDGPFEHIFDFCQRV-GRKVNK 875

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            RV+E+LV +GA D  G +R  L   +D   K A    KN+     ++F          IT
Sbjct: 876  RVMEALVRSGAFDTIGPNRATLFACIDEALKRAVQDAKNQDAGMMDLFG---------IT 926

Query: 940  LEKFSVENS------------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
            +E+ + E++              R + E+  LG Y +GHP+D Y+  +R+  ++     +
Sbjct: 927  VEE-NTEDAYREIGIQHEWPPRQRLDGEKDTLGLYVTGHPIDEYEKEIRRF-VRSKIVDL 984

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               RG+   +A ++V  +  K++KG  I +VT  + +   E   FP
Sbjct: 985  QPKRGDTQVMAGLIVDLRITKSKKGGNIAFVTLDDRSARIEVTVFP 1030


>gi|300703510|ref|YP_003745112.1| DNA polymerase III subunit alpha [Ralstonia solanacearum CFBP2957]
 gi|299071173|emb|CBJ42487.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum CFBP2957]
          Length = 1176

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/990 (40%), Positives = 597/990 (60%), Gaps = 38/990 (3%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P FVHL++HS YS+++G + L+  +   AAD   A+A+TD  N F  + F ++A   G++
Sbjct: 4   PRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKGVK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           P++G         ++ +TN  +   P+   ++LLV   +GY  L  L++R +L +Q +  
Sbjct: 64  PVVGA--------DVWITNHDERDKPS--RLLLLVRNKQGYLNLCTLLARAWLSNQHRGR 113

Query: 129 VRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             I   W  E G E      GL+ L+G   G +  A    +  +A K    + ++F    
Sbjct: 114 AEIAPEWFDEPGVEDAPLATGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQAF 173

Query: 183 YVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
           Y+ LQR    G + Y + Q V+LA + +LP+VAT+   F++++D+ AH+  + +A   ++
Sbjct: 174 YIELQRAGQAGTEAYIQ-QAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDLL 232

Query: 241 SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
           +   R R  + + Y K + EM ++F+D+P AL NTV+IA+RC+  L++  P LP F   +
Sbjct: 233 ANPRRTRRFSTEQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTPD 292

Query: 300 CDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              +    ++ L + A  GLE R   L   A  +     +Y  RL+FE   I +M F GY
Sbjct: 293 GMSL----DDYLVHLAKDGLEKRMEVLFPDAAVREAKRPEYYARLEFETGTIIKMGFPGY 348

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
           FLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMP
Sbjct: 349 FLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMP 408

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           DFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD + 
Sbjct: 409 DFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVA 468

Query: 477 KLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
           KLIP  P   V+L+ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++I 
Sbjct: 469 KLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIA 528

Query: 536 DRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQ 591
              L+   P+Y     D  V +Q++   +E  GL+KFDFLGL TLT+L   ++ +  L  
Sbjct: 529 PGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLDP 588

Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                + S IP  D   + +L    T+ +FQLES GM+  L+  +PD  EDIIALV+LYR
Sbjct: 589 SKADWNCSHIPLTDKPAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYR 648

Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           PGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD
Sbjct: 649 PGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGAD 708

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           +LRRAMGKK  EEM + +E F  GA+K+G+S   A  IF+L+ KFA YGFNKSHAAAYA+
Sbjct: 709 LLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYAL 768

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPSVNTPCVDFKV 830
           ++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DA   N ++++PP +N     F  
Sbjct: 769 LAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFTP 828

Query: 831 GDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D + I Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV AG
Sbjct: 829 TDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRAG 888

Query: 890 ALDCFGYSRMQLLQS--LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
           A D    +R QLL S  L       +    N+ +  + +   +      ++  E  +   
Sbjct: 889 AFDSLNDNRAQLLVSIGLAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDE--APWT 946

Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
           +  + + E++ LGFY SGH  D  +  +R+
Sbjct: 947 TKRKLQEEKQALGFYLSGHLFDECRDEVRR 976


>gi|319956110|ref|YP_004167373.1| DNA polymerase iii, alpha subunit [Nitratifractor salsuginis DSM
            16511]
 gi|319418514|gb|ADV45624.1| DNA polymerase III, alpha subunit [Nitratifractor salsuginis DSM
            16511]
          Length = 1183

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1048 (38%), Positives = 617/1048 (58%), Gaps = 51/1048 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F HL +H+ YSLL+GA  +  +  K+ A    ++A+TD  N+F  ++F      
Sbjct: 1    MSEHPRFTHLHLHTEYSLLDGANKIKALAKKVKALGMDSVAMTDHGNMFGTIDFYNTMRK 60

Query: 65   AGIQPIIGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
             G++PIIG +  +   D+L  K T Q          + L      GY+ L+ L S+ YL 
Sbjct: 61   EGVKPIIGMEAYLHNSDDLGDKSTRQRY-------HLCLYAKNEIGYKNLMYLSSQAYL- 112

Query: 123  DQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPID---------RAFFFNSSQVAEKRLL 172
             +G     RI    L+E  +EGLI  +    G ++         + F     + A+K  L
Sbjct: 113  -KGFYYYPRINKKLLRE-HSEGLICSSACLQGEVNWHLNLSDRNKKFGAGGYEEAKKIAL 170

Query: 173  TFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             +K++FGD  Y+ L RH   D+ R + Q+++L+    + ++ATN++ + + ED EAH+  
Sbjct: 171  EYKEIFGDDFYLELMRHGIGDQQRIDEQIIRLSLETGIKIIATNDTHYTNPEDAEAHEAF 230

Query: 232  MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            M +A +      +R R +  + Y+K+  EM  +F+D+PEALENT EIA +C+  +++  P
Sbjct: 231  MCIAMNKQYDDPNRLRHSVHEFYVKSPEEMARLFADIPEALENTQEIAEKCNLEIKLGNP 290

Query: 291  ILPRF-IEKECDDIQKEEENE-------------LRNKAVAGLEVRLAQGAIAKGYHAQD 336
              P F   +E   +   E  E               ++A  GLE RL    + +  HA+ 
Sbjct: 291  TPPNFKFTRERAKLAGLELPEPEEEYSLANDIVLFEHEARKGLEKRLEH--VPEEKHAE- 347

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
            YR+RL+ E+ +I  MKF GY LIV DF++ AK+  IPVGPGRGS AGS+ AY+L+ITDID
Sbjct: 348  YRERLETEIGIINSMKFPGYMLIVWDFVRAAKEMGIPVGPGRGSAAGSLVAYSLSITDID 407

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            P+ + LLFERFLNP+R+SMPD D+DFCQ RR E+I YV  KYG   VAQIITFG L AK 
Sbjct: 408  PIPYGLLFERFLNPERVSMPDIDMDFCQSRRQEIIDYVVEKYGRVNVAQIITFGKLLAKG 467

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEIS 515
             +RDV R + +PY+Q D   KLIP++    ++L+ A A + + +E    DP   ++   +
Sbjct: 468  VIRDVARVMGLPYAQADAFAKLIPDELG--ITLKDAYAKEPKIKELIERDPKAAQVWRFA 525

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
              LEGL R+A THAAG+VI + PL +  P+++    +   TQ++ K++E   LIKFDFLG
Sbjct: 526  LALEGLNRNAGTHAAGVVISNEPLWEKTPLFKPTGQETLATQYSGKYVEDVDLIKFDFLG 585

Query: 576  LKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            LKTLT ++++L  + +R G ++D   +  +D + Y  + T  TLG+FQ+ES+GM+   + 
Sbjct: 586  LKTLTTIEEALQLIEKRHGKRIDFKQVDINDPKVYDYIATGNTLGLFQIESAGMQDLAKK 645

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            ++P   EDIIA+++LYRPGP+++ ++  +  RK+G+ +I  + P ++P+LK T GVI+YQ
Sbjct: 646  LKPSSFEDIIAMLALYRPGPMESGMLDDFVERKHGRAEITYMFPELEPILKPTYGVIVYQ 705

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQI Q + G+SL  AD++RRAMGKKIKEEMDK K +F  GA K G  +  A  +F+L
Sbjct: 706  EQVMQIVQTIGGFSLGGADLVRRAMGKKIKEEMDKLKGQFADGAEKKGFDRAKAEELFDL 765

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE DN  K+ ++    +  
Sbjct: 766  IVKFAGYGFNKSHSAAYAMVTFYTSYLKCYYPTEFMAAQLTLEKDNTTKVVRYVDAVKHM 825

Query: 813  NIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
             I ++PP VN   + F      G   I + L  +KG G    R I+E+  + PF  L DF
Sbjct: 826  GIDLLPPDVNRSDLAFIADEIEGRPTILFGLGGVKGAGDVAIRSILESREEGPFRDLSDF 885

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             SR+D+ K+N++V+E+ + AGALD  GY+R  +L  ++ I + A    + +     ++F 
Sbjct: 886  ISRIDTAKVNKKVIEAFIKAGALDGLGYTRKAMLTQIEAIMEAASKATQAKKMAENSLFG 945

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
              +     ++ L+     +     E E+  LGFY SGHPLD Y+  L K+      E   
Sbjct: 946  AGEEMTHVELELDPMEEFDPLQMLEFEKETLGFYVSGHPLDKYREELAKIDYTLSSEIDE 1005

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
               G+       + S  +K ++KG++ G
Sbjct: 1006 LADGSQALFIGKIESITEKISKKGNKFG 1033


>gi|258514118|ref|YP_003190340.1| DNA polymerase III DnaE [Desulfotomaculum acetoxidans DSM 771]
 gi|257777823|gb|ACV61717.1| DNA polymerase III, alpha subunit [Desulfotomaculum acetoxidans DSM
            771]
          Length = 1145

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/1037 (38%), Positives = 626/1037 (60%), Gaps = 32/1037 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PSFVHL VH+ YSLL+GA  +  ++ K  +    A+AITD   +F  ++F +     GI+
Sbjct: 2    PSFVHLHVHTEYSLLDGAARIKEVVKKAKSLGMSALAITDHGVMFGVVDFFKACKKEGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPF--PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            PI+GC++ +  +     +   +TP     +  +VLL     GY+ L+ LVS  +   +G 
Sbjct: 62   PILGCEVYVAPR-----SRHDRTPRVDDNLYHLVLLAKNETGYRNLLNLVSISF--TEGF 114

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
                     +  + +EGLI L+G  +G +      +  + A      + K+FG D  Y+ 
Sbjct: 115  YYKPRVDKEVLAMYSEGLIALSGCIAGEVAEYILKDLPEQARAAAAEYLKIFGEDNYYLE 174

Query: 186  LQRHRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H   ++ + + ++V+++    +PLVATN+  ++++E+ E  DVL+ +     V    
Sbjct: 175  IQDHSFPEQKKANRELVKISEELNIPLVATNDVHYVAKENAEMQDVLLCIQTGKTVDDPK 234

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R +  + + YLK+  EM  +F +LP+AL+NTV IA +C   ++     LP +   E   +
Sbjct: 235  RMKFQSQEFYLKSPEEMAELFPELPQALQNTVSIADKCEISMEFGQLHLPFYQVPEGHTV 294

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                E+ LR     GL  R   GA  +    +  RQR++FEL+VI +M +S YFLIV DF
Sbjct: 295  ----ESYLRELCEKGLLDRY--GAAPE----ESVRQRMEFELSVIEQMGYSAYFLIVWDF 344

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I +A++N +PVGPGRGS AGS+ +Y L IT++DPL++ LLFERFLNP+R+SMPD DID C
Sbjct: 345  IDYARQNGVPVGPGRGSAAGSLVSYVLGITNLDPLKYDLLFERFLNPERVSMPDIDIDIC 404

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR++VI YV  KYG ERVAQI TFG++ AK A+RDVGRAL M Y +VDR+ KL+P + 
Sbjct: 405  YERRNKVIEYVVRKYGAERVAQIATFGTMAAKGAIRDVGRALAMSYGEVDRVAKLVPAE- 463

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             H    +A++++    EA   +P V RL++ ++ LEG+ RHASTHAAG+VI  +PL+  +
Sbjct: 464  LHMTIEKALSENQDLLEAYNNEPEVRRLIDTAKGLEGMPRHASTHAAGVVITKQPLTHYL 523

Query: 544  PMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
            P+Y+   +D PV TQF  + +E+ GL+K D LGL+TLT++  ++  + +R G  +D+  I
Sbjct: 524  PLYKS--TDGPVTTQFAKEPVEELGLLKMDLLGLRTLTVIADAVAEVNKRAGSPLDIDKI 581

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
              +D  T+ LL+    +G+FQLESSGMR  L  ++P+  EDI+ALV+LYRPGP+ + +V 
Sbjct: 582  TLEDKNTFDLLSRGEGIGVFQLESSGMRAILRDLKPEVFEDIVALVALYRPGPLGSGMVD 641

Query: 661  -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +   K+G +K+  +HP+++P+LK+T GVI+YQEQVM+I+  L+G+SL EAD+LRRAMGK
Sbjct: 642  DFIKNKHGLQKVSYLHPILEPILKDTYGVILYQEQVMRISSDLAGFSLGEADLLRRAMGK 701

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  E +   + +F+ GA+K  +   +A  +F+L+  FA YGFNKSH+AAYA++SYQTA++
Sbjct: 702  KKPEVIAGLRSQFMEGAAKKDVDPEVAGKVFDLMEFFAGYGFNKSHSAAYALVSYQTAYL 761

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K +YP EF+AA +T   DN +K+  + ++ R+  I ++PP VN     F V  ++I + L
Sbjct: 762  KANYPAEFMAALLTSVRDNSDKVAVYIEECRRMGIVVLPPDVNESRDGFTVVGDKIRFGL 821

Query: 840  AAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            AA+K VG      I+       PF +  DFC+R+D++ +NRRVLESL+  GA D  G+ R
Sbjct: 822  AAMKNVGLAAVYSIISMREQGGPFKNYADFCNRLDTRVVNRRVLESLIKGGAFDSLGHRR 881

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHEN--IFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             QL+  +D     AQ  +++R +   +   F  E+  ++    L   +    S     E+
Sbjct: 882  AQLMAVVDTGLSIAQQAQRDRNSGQMSLFEFLEEEEEYNLSFVLPDIAEYLYSEMLALEK 941

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LG Y SGHPL  Y+ +LR+       E      G  + L  ++++ +Q  T+KG  + 
Sbjct: 942  ESLGLYISGHPLAEYREVLRQNDTVNAGELPDFTEGETVALGGLIINYKQITTKKGDAMA 1001

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +V   +     E   FP
Sbjct: 1002 FVNLEDLTGVVEVVIFP 1018


>gi|206582064|pdb|3E0D|A Chain A, Insights Into The Replisome From The Crystral Structure Of
            The Ternary Complex Of The Eubacterial Dna Polymerase Iii
            Alpha-Subunit
 gi|206582065|pdb|3E0D|B Chain B, Insights Into The Replisome From The Crystral Structure Of
            The Ternary Complex Of The Eubacterial Dna Polymerase Iii
            Alpha-Subunit
          Length = 1220

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1091 (39%), Positives = 624/1091 (57%), Gaps = 84/1091 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            F HL  H+ +SLL GA  L ++L   K    + PA+A+TD  NLF A+EF +KA A G++
Sbjct: 7    FAHLHQHTQFSLLNGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATAMGVK 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG +  +  +       +GK        + LL     GYQ L+ L SR YL +   + 
Sbjct: 67   PIIGYEAYVAAESRFD-RKRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYL-EGFYEK 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L+E   +GLI L+G     I +    +   +AE RL     +FGDR ++ +Q 
Sbjct: 125  PRIDREILRE-HAQGLIALSGCLGAEIPQFILQDRLDLAEARLNEDLSIFGDRFFIEIQN 183

Query: 189  HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ + +QV+ + A  + L +VATNN  ++ +ED  AH+VL+A+   T +   +R R
Sbjct: 184  HGLPEQKKVNQVLKEFARKYGLGMVATNNGHYVRKEDARAHEVLLAIQSKTTLDDPERWR 243

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEA------LENTVEIARRCSFILQVHAPI---LPRF-- 295
               D  Y+K   EM ++   LPEA       +NTVEIAR C   L +   +   +PRF  
Sbjct: 244  FPCDEFYVKTPEEMRAM---LPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPRFPL 300

Query: 296  ------------------IEKECDDIQK-----------------------EEENELRNK 314
                              + +  D I +                       E    +  K
Sbjct: 301  PEGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERALAEALARVEEK 360

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
            A   L  RL      + + A+    R  +EL+VI RM F GYFLIV D+I WA+ + + V
Sbjct: 361  AWEELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARGHGVSV 420

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
            GPGRGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF    RD VI+YV
Sbjct: 421  GPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYV 480

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIA 493
            + +YG ++VAQI TFGSL +KAAL+DV R   +P+ + + L KLIP     P  LQ A  
Sbjct: 481  RERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLQEAFE 540

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
             +   R     D  + +++E++ +LEGL RHAS HAAG+VI   PL+ LVP+ RD +   
Sbjct: 541  AEPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRD-QEGR 599

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLL 612
            PVTQ++M  +E  GL+K DFLGL+TLT L ++   + + +GV++D   +P DD +T+ LL
Sbjct: 600  PVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVELDYDRLPLDDPKTFELL 659

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T G+FQLES GM   + G++P  +EDIIALVSLYRPGP+++I  Y  R +G+E + 
Sbjct: 660  SRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHHGQEPVS 719

Query: 673  -----SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
                      + P+L ET G+ +YQEQ+MQIA  ++GYSL EAD+LRRAMGKK  EEM K
Sbjct: 720  YAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKRVEEMQK 779

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +ERF+ GA + G+ +  A  +F++L  FA+YGFNKSHAAAY+++SYQTA++K HYPVEF
Sbjct: 780  HRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKAHYPVEF 839

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +AA +++E  + +K+ ++ +DAR   I ++PP VN    DFKV    I + L+A+K VG 
Sbjct: 840  MAALLSVERHDSDKVAEYIRDARALGIPVLPPDVNRSGFDFKVVGEEILFGLSAVKNVGE 899

Query: 848  TTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
              AR I+E      PF SL DF  R+  + +N+R LESLV AGALD FG  R +LL SL+
Sbjct: 900  MAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDAFG-DRARLLASLE 958

Query: 907  NIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             + ++A    +   +    +FA  E+    +   L++ ++    +R+E E   LG Y SG
Sbjct: 959  PLLRWAAETRERGRSGLVGLFAEVEEPPLVEASPLDEITM----LRYEKE--ALGIYVSG 1012

Query: 966  HPLDVYKPILRKMG---IKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            HP+  Y P LR++    I+   E V  + G   + L+ MV    +K TR G  +   T S
Sbjct: 1013 HPVLRY-PGLREVASCTIEELSEFVRELPGKPKVLLSGMVEEVVRKPTRSGGMMARFTLS 1071

Query: 1022 EPAKEYEANFF 1032
            +     E   F
Sbjct: 1072 DETGALEVVVF 1082


>gi|94969774|ref|YP_591822.1| DNA polymerase III, alpha subunit [Candidatus Koribacter versatilis
            Ellin345]
 gi|94551824|gb|ABF41748.1| DNA polymerase III, alpha subunit [Candidatus Koribacter versatilis
            Ellin345]
          Length = 1159

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/1031 (38%), Positives = 617/1031 (59%), Gaps = 27/1031 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL +H+ YS+L+GA  +  ++ ++    QPA+A+TD  N++ A+ F   A   G++
Sbjct: 3    PEFVHLHLHTDYSMLDGASDVEKLVARVKELGQPAVAMTDHGNIYGAVHFQNAAKEKGVK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQ 127
             I+GC+L I  ++N +   +G         +++L    EGY+ L+++VS   L   G   
Sbjct: 63   AILGCELYICQKENHREAPEGDK----YNHLIVLAENEEGYRNLVKIVSEASL--HGFYY 116

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              R+  ++L E  ++GLI L+    G +         + A+K   TF  +FG +  Y+ +
Sbjct: 117  KPRVSKNFLAE-HSKGLIGLSACLKGEVAERLTEGKYEAAKKAATTFGDIFGANNFYLEI 175

Query: 187  QRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q     +  R  Q +  L      P+VATN+S +L E+D  A DV++ +     +   +R
Sbjct: 176  QDQGLEEEKRIHQGLFDLEKDLGYPMVATNDSHYLCEDDSHAQDVMVCIQTGKSIHDTNR 235

Query: 246  PRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             + + + + +K+  EM  +F+     L  T+EIA RC+  L+      PRF   E   I 
Sbjct: 236  MKFSTNQFFVKSAHEMSQVFTGADRVLARTMEIAERCNVKLEKVKNPFPRFDVPEGMSID 295

Query: 305  KEEENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E+  R      + + R  Q A    +   +Y +RL+FE++ I +M+F GYFLIV DF
Sbjct: 296  SYFEDVARRGMAKRMNLMRDLQSAGRLRHTFAEYEERLNFEIDTIKKMQFPGYFLIVWDF 355

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++A++NNIPVGPGRGS AGS+ AYA+TITD+DPL+ +LLF+RFLNP+R+SMPD D+DFC
Sbjct: 356  IRYARENNIPVGPGRGSAAGSLVAYAMTITDVDPLQNNLLFQRFLNPERISMPDIDVDFC 415

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR EVI+YV  KYG ++VAQIITFG++ AKAA++D GRA+ +PY++VDR+ K++P   
Sbjct: 416  MNRRGEVIKYVTEKYGRDQVAQIITFGTMAAKAAIKDCGRAMDIPYAEVDRVAKMVPTTI 475

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +   A+ D      A  ++P V  L++ +++LEGL R++  HA+ +VI  +PL+ LV
Sbjct: 476  NITID-GALKDSPMLATAYESEPQVKELIDTAKRLEGLVRNSGVHASAVVIAPQPLTDLV 534

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+++  ++D  VT ++MK +EK GL+K DFLGL TLT+L  +L  + Q +GVK++L  +P
Sbjct: 535  PLHK-TKNDEIVTAYDMKAVEKMGLLKMDFLGLTTLTILDDALKLIDQTQGVKIELEKLP 593

Query: 603  FDDHETYHLLTTKG-TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
            FDD +TY  +   G T G+FQ ESSGMR  L   +PD +ED+ AL +LYRPGPI   ++ 
Sbjct: 594  FDDKQTYERIFHSGYTSGVFQFESSGMRDVLRKYKPDTVEDLTALNALYRPGPIQGGMID 653

Query: 661  -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             + NRK G+ K+   H  +  +L ET GVI+YQEQVMQIA  L+GYSL +AD+LRRAMGK
Sbjct: 654  DFINRKWGRAKVDYFHDDLKTILVETLGVIVYQEQVMQIANKLAGYSLGDADLLRRAMGK 713

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  +EM+KQ++RF  GA   G  K + V+IF+L+ +FA YGFNKSH+AAYA+++Y TA++
Sbjct: 714  KDAKEMEKQRDRFTKGAIDRGYDKQLTVHIFDLMEQFAGYGFNKSHSAAYALLAYHTAYL 773

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            KTH+P+EF+AA +T    + + + K+  + R   I++ PP VN     F      I + L
Sbjct: 774  KTHFPIEFMAALLTSVSGSTDDVVKYINECRDMGIEVRPPDVNVSLASFTPDQGAIRFGL 833

Query: 840  AAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            +AIK +G      I+ A  A   F S  +FC +VD + LN+RV+ESL+ +GA+D  G  R
Sbjct: 834  SAIKNLGHNAIESIVTARQAIGKFSSFFEFCEKVDLRLLNKRVVESLIKSGAMDPLG-RR 892

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKI-TLEKFSVENSSVRFENE 955
             QL   +D   + AQ  +++  +    +F    E+     K+ +L      +   R  NE
Sbjct: 893  SQLFAVIDKAMEAAQKTQRDAESGQHGLFGVFDEEPVAGKKVDSLPNVPDWDEHQRLANE 952

Query: 956  QRVLGFYFSGHPLDVYKPIL---RKMGIKGYEE-SVATIRGNNIRLAAMVVSKQQKKTRK 1011
            + +LGF+ +GHP++ YK  L   R M  +  +    +T +G    +  ++   +  K++K
Sbjct: 953  KEILGFFITGHPMEKYKDKLADFRAMSTEDLKNMRTSTAKGEEYYVGGVMSGVKVAKSKK 1012

Query: 1012 GSRIGWVTFSE 1022
            G      T  +
Sbjct: 1013 GDMYALGTLED 1023


>gi|237747737|ref|ZP_04578217.1| DNA polymerase III alpha subunit [Oxalobacter formigenes OXCC13]
 gi|229379099|gb|EEO29190.1| DNA polymerase III alpha subunit [Oxalobacter formigenes OXCC13]
          Length = 1153

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/995 (41%), Positives = 601/995 (60%), Gaps = 48/995 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL++HS YS+++G + + +++   A D QPA+A+TD  NLF  ++F + A   G++PI
Sbjct: 6   FVHLRLHSEYSIVDGLVRIEDVIAAAAKDGQPAMALTDLANLFGLIKFYKAARKKGVKPI 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            GC        ++ +TN      P+   ++LLV    GY  L EL+SR +L +Q +    
Sbjct: 66  GGC--------DVWITNDADREKPS--RLLLLVKDRTGYLNLCELLSRSWLENQWRGRAE 115

Query: 131 ICLSWLQEI----GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
           I + WL+E+    G  GLI L+G   G I  AF  +    AEK    +  +F D  Y+ +
Sbjct: 116 IRIEWLEELSKKTGDMGLIALSGAKQGDIGMAFEASGFDNAEKCARRWASIFPDNFYIEI 175

Query: 187 QR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           QR  H G ++Y     V+LA   +LP+VAT+   FLS+E++ AH+    ++   ++S K 
Sbjct: 176 QRTGHSGMEQYLR-HAVELADKLQLPVVATHPVQFLSQEEFAAHEARTCISEGEILSNKR 234

Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
           R        Y   + EM  +F+DLP A++N+VEIARRC+ +L++    LP F     D +
Sbjct: 235 RAHNFNERQYFYTQEEMAELFADLPGAIQNSVEIARRCNLVLELGHHKLPEF--PTPDGM 292

Query: 304 QKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +E   L ++A  GLE RL +       +      Y +RLD+E+  I  M FSGYFLIV
Sbjct: 293 TLDEF--LTSEAKHGLEKRLEELFPDEEERKTQRPRYDERLDYEIGTIINMGFSGYFLIV 350

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
           ADFI+WAK N +PVGPGRGSGAGS+ AY+L IT++DPL ++L+FERFLNP+R+SMPDFD+
Sbjct: 351 ADFIRWAKNNGVPVGPGRGSGAGSLVAYSLLITNLDPLAYNLIFERFLNPERVSMPDFDV 410

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DFCQ  RD+VI+YV+++YG + V+QI TFG++ AKAA+RDVGR L + Y+  D + KLIP
Sbjct: 411 DFCQHGRDKVIQYVKDRYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFCDGISKLIP 470

Query: 481 NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             P   V++ +A  ++    E   ++  V +LL +++++EG+ R+   HA G++I    L
Sbjct: 471 FKPGKQVTIAEAKKEEPLLAEREESEEEVKQLLALAEQVEGITRNVGMHAGGVLIAPGKL 530

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKV 596
           +   P+Y        V+ F+   +E  GL+KFDFLGL TLT+L  ++ ++ Q        
Sbjct: 531 TDFCPLYTQGGEAGVVSHFDKSDVEAVGLVKFDFLGLTTLTILDLAVKYIRQLDPEMANF 590

Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
           +L  IP DD  TY LL    T+ +FQLES GM+  L+  +PD  EDIIALV+LYRPGP+D
Sbjct: 591 NLDTIPLDDKATYDLLIKAKTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMD 650

Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            I  +  RK+G EK          +L ET G+++YQEQVMQ+AQ++ GY+L  AD+LRRA
Sbjct: 651 LIPDFCRRKHG-EKFEYPDERTKGILSETYGIMVYQEQVMQMAQVIGGYTLGGADLLRRA 709

Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
           MGKK   EM + ++ F  GA+KN +++  A  IF+L+ KFA YGFNKSHAAAYA++SYQT
Sbjct: 710 MGKKDANEMARHRQIFRDGAAKNDLTEAKADEIFDLMEKFAGYGFNKSHAAAYALLSYQT 769

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVDFK-VGD-- 832
           A++K H+   F+AA+M+L MD+ +K+K   +DA +   + I+PP +N     F  VG+  
Sbjct: 770 AFLKQHHAAAFMAANMSLAMDDTDKVKVLVEDAVEVCGLTILPPDINHSEYYFTPVGEAP 829

Query: 833 -------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                  + I Y L A+KG G +    I++A  ++PF  L DFC RVD  ++NRR +ESL
Sbjct: 830 SVSKKPVSAIRYGLGAVKGSGESAIEAIVKARKERPFTDLFDFCMRVDKHQINRRTIESL 889

Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
           + AGA DCF   R  LL S+D +   A    +   N+  ++F  E+   +   T+E   V
Sbjct: 890 IRAGAFDCFNVDRAVLLASVD-LAIEAAEQAEASANQ-VSLFGEEEAVIN---TVEYVQV 944

Query: 946 ENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKM 978
            + +   +   E+ VLGF  SGH  + Y    R+ 
Sbjct: 945 PHWTEKHKLTEEKGVLGFCLSGHLFNAYAAEARQF 979


>gi|295675964|ref|YP_003604488.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1002]
 gi|295435807|gb|ADG14977.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1002]
          Length = 1196

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/1022 (39%), Positives = 612/1022 (59%), Gaps = 40/1022 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A   G++
Sbjct: 7    PRFVHLRVHSEFSIADGIVRLDDIVAAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+  L +Q +  
Sbjct: 67   PIAGC--------DVWITNPDDRDKPS--RLLLLVKDRRGYLNLCELLSKASLTNQYRGR 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL+    EGL+ L+G   G I  A    + + A++    + K+F    Y+ LQR
Sbjct: 117  AEIEAGWLETGLGEGLLALSGAQQGDIGLALAAGNEEAAKRNARHWAKVFPGGFYIELQR 176

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G ++Y + Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++   R 
Sbjct: 177  YGQPGGEQYVQ-QAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRQ 235

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + Y + + EM ++F+D+P AL NTV+IA+RC+  L++  P LP F   +   +  
Sbjct: 236  KRFTSEQYFRTQQEMATLFADIPSALANTVQIAKRCNLTLELGKPKLPLFPTPDGMSL-- 293

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RL Q       +      Y QRL+FE   I +M F GYFLIVAD
Sbjct: 294  --DDYLVQLSKEGLEKRLEQLYPDEAERDAQRPTYYQRLEFECGTIIKMGFPGYFLIVAD 351

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 352  FINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDF 411

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG   V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 412  CQHGRDRVIQYVKEKYGANAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 471

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LLE++Q++EGL R+   HA G++I    L+ 
Sbjct: 472  PGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTD 531

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +    K D SL
Sbjct: 532  FCPLYTQGDDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSL 591

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPGP+D I
Sbjct: 592  GQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLI 651

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 652  PSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 711

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM + +E F  GA++NG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 712  KKKPEEMAQHREIFAEGAARNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 771

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834
            +K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP VN     F+     D + 
Sbjct: 772  LKAHHPAEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDVNLSAYRFEPVAEADGKR 831

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  D  F  + DFC+RVD + +NRR +E+L+ AGA 
Sbjct: 832  SRTIRYGLGAIKGSGQNAIEEILRAREDGRFIDIFDFCNRVDRRIVNRRTIEALIRAGAF 891

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QL+ S+    + A+    N                 + +   ++  +    +
Sbjct: 892  DTLHANRAQLIASVSLAMEAAEQAAANALQAGLFDMGDAPSQGHELVDEPEWPEKR---K 948

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D YK  +R+       + +  ++ G +  +A ++VS + + T+
Sbjct: 949  LQEEKAALGFYLSGHLFDAYKDEVRRF----VRQKIGELKEGRDKLVAGVIVSLRTQMTQ 1004

Query: 1011 KG 1012
            +G
Sbjct: 1005 RG 1006


>gi|225025259|ref|ZP_03714451.1| hypothetical protein EIKCOROL_02156 [Eikenella corrodens ATCC 23834]
 gi|224942017|gb|EEG23226.1| hypothetical protein EIKCOROL_02156 [Eikenella corrodens ATCC 23834]
          Length = 1143

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1047 (39%), Positives = 613/1047 (58%), Gaps = 64/1047 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P ++ L+ H+ +S+ +G L +  ++ K +A   PA+ I+D  N F  ++F +    AGI
Sbjct: 3    APVYIPLRQHTEFSITDGTLRIKELVKKASAFGLPALGISDLMNTFGLVKFYKACRGAGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGK 126
            +P++G  + +   +N +       PF      +LLV    GY+RL EL++R Y+  D+  
Sbjct: 63   KPVVGADVWVANPENPEQ------PF----RAMLLVRNEAGYRRLCELLTRAYVGTDRNV 112

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +   WL E G EGLI L+G   G + R         A      + + F D  Y+ L
Sbjct: 113  AHAELEPQWLAEGGNEGLICLSGAHLGEVGRQLMNGHDSAACAAAQKYAQWFPDAFYLEL 172

Query: 187  QRHRGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            QR      +  S    ++LA    LP+VAT+ + FL+ +D++AHD  + +A   V++ K 
Sbjct: 173  QRLPEKPEWETSVSGSLKLAAELGLPVVATHPAQFLNPDDFKAHDARVCIAGGWVLADKR 232

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RPR      Y  +  E+ + F+DLPEAL+NTVEIA+RC+  L +    LP+F   +   +
Sbjct: 233  RPRDFVAGQYFASPEEVAARFADLPEALQNTVEIAKRCNLTLTLGKNFLPQFPTPDGMSL 292

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIV 360
                ++ L + +  GL  RLA     +    Q   +Y+ RLDFEL  I +M F GYFLIV
Sbjct: 293  ----DDYLAHLSNQGLRERLAALYPDEAEREQKLPEYQARLDFELGTIVQMGFPGYFLIV 348

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFI WAK N  PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDI
Sbjct: 349  ADFINWAKNNGCPVGPGRGSGAGSLVAYSLKITDLDPLRYALLFERFLNPERVSMPDFDI 408

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+ R  VI YV+ KYG E V+QI+TFG+L +KA +RDVGR L++P+   DRL KLIP
Sbjct: 409  DFCQNNRGRVIEYVRQKYGFEAVSQIVTFGTLSSKAVIRDVGRVLELPFGVCDRLSKLIP 468

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRL---------LEISQKLEGLYRHASTHAAG 531
             +   P+SL+         +A  A+P + ++         +E+++KLE L R    HA G
Sbjct: 469  LEANKPLSLE---------KAMEAEPEIAKVLEEEEAEELMELAKKLEDLTRGLGMHAGG 519

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I    +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + +F+AQ
Sbjct: 520  VLIAPGKISDFCPVYQADESASPVSMYDKGDVEDIGLVKFDFLGLRNLTIIEMAQEFIAQ 579

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              G ++D++ I   D + Y +     T  +FQ ES+GM++ L       +E+IIA VSLY
Sbjct: 580  TTGERIDVNHIDLTDQQAYEVFRKANTTAVFQFESTGMKKMLAQANTTKLEEIIAFVSLY 639

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  +  R  G  +   +H L++P+L+ T G+++YQEQVMQ AQ++ GYSL  A
Sbjct: 640  RPGPMDLIPDFIARMKGA-RFEYMHLLLEPVLQPTYGIMVYQEQVMQAAQVIGGYSLGGA 698

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM K +E F  GA+K GI++  A  IF+ + KFA YGFNKSHAAAYA
Sbjct: 699  DLLRRAMGKKKPEEMAKHREIFAEGAAKQGIAREKADEIFDYMEKFAGYGFNKSHAAAYA 758

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +++YQTAW+K HYP EF+AA+M+ E+DN +++K F  DAR   I+ +PP VN     F+ 
Sbjct: 759  LVAYQTAWLKAHYPAEFMAATMSSELDNTDQLKLFYDDARDNGIRFLPPDVNHSGYHFQP 818

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
               +RI Y+L AIKG G      I+ A  +   F SL DFC RV  + +NRR +E+LV  
Sbjct: 819  DAQHRIRYALGAIKGTGEAAVEAIVAAREEGGAFKSLFDFCERVSRQHINRRTIEALVRG 878

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF---SDKIT-LEKFS 944
            GA D    +R +LL ++D     A+  E+N         A++ G F    D I  LE   
Sbjct: 879  GAFDSIEPNRARLLANIDLAMSNAEQQEEN---------ANQGGLFDMVEDAIAPLEMID 929

Query: 945  VE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMV 1001
            V     +     E++ +GFYFSGHP    +  +R+         ++ ++ N N+R+A   
Sbjct: 930  VPAWGEAELLAEEKQAIGFYFSGHPFGPAEKEVRQFA----PTRLSQLKPNDNVRVAGFA 985

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             + +    ++G +I ++T  +   + E
Sbjct: 986  TAIRSMVGKRG-KIAFITLEDTGGKAE 1011


>gi|167771346|ref|ZP_02443399.1| hypothetical protein ANACOL_02712 [Anaerotruncus colihominis DSM
            17241]
 gi|167665986|gb|EDS10116.1| hypothetical protein ANACOL_02712 [Anaerotruncus colihominis DSM
            17241]
          Length = 1175

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1037 (38%), Positives = 604/1037 (58%), Gaps = 34/1037 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+GA  +  +++++ A  Q A+AITD   +F A++F + A   G++PI
Sbjct: 14   FAHLHVHTEYSLLDGACRIERLIERVKALGQSAVAITDHGVMFGAVDFYKCAKKHGVKPI 73

Query: 71   IGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS- 128
            IGC++ +  +      ++  T P+     ++LL     GYQ LI++VS  ++  +G  S 
Sbjct: 74   IGCEVYVAPRSRFDKQHKIDTSPY----HLILLCKNETGYQNLIKMVSAGFV--EGFYSK 127

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             RI  + L++   EGLI L+   +G I R         A++  + ++ LFG D  Y+ +Q
Sbjct: 128  PRIDRALLEQY-HEGLICLSACLAGEIPRMLAQGDYACAKETAVWYRDLFGADNYYIEIQ 186

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKD 244
             H G    ++    +V+LA    + LVATN++ ++ + D     VL+ +  ++TV +  D
Sbjct: 187  NH-GIRLQQQILPDLVRLAGEIGVGLVATNDAHYIEKADARMQSVLICIQTNTTVDAPGD 245

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                T + Y+K+R EM  +F + P AL+NT++IA +C+   +     LP F+    +D Q
Sbjct: 246  LEFETEEFYIKSRDEMDELFGNYPGALDNTLKIAEQCNVEFEFGNTKLPLFVAPNGEDNQ 305

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                   R     GL  R  +         +   +RL++ELN+I +M +  Y+LIV+DFI
Sbjct: 306  AY----FRRLCAEGLRRRYGEQP------DRSVTERLEYELNIITKMGYVDYYLIVSDFI 355

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AK   IPVGPGRGSGAGS+ AY + IT IDPLR+SLLFERFLNP+R+SMPDFDIDFC 
Sbjct: 356  NYAKSVGIPVGPGRGSGAGSLAAYCIGITGIDPLRYSLLFERFLNPERISMPDFDIDFCY 415

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YV  KYG + VAQIITFG++ A+ A+RDVGR L M Y QVD + KL+PN+  
Sbjct: 416  ERRQEVIDYVVRKYGADHVAQIITFGTMAARGAIRDVGRVLGMSYQQVDSIAKLVPNELK 475

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+A  +  +     D  V  LL++++K+EG+ RHASTHAAG+VI   P+   VP
Sbjct: 476  MTLD-KALAVSADLKTMCAEDKRVAELLDMARKIEGMPRHASTHAAGVVITRDPVDSYVP 534

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +Y+     +PVTQF M  +E+ GL+K DFLGL+TLT++  +    A+         +P D
Sbjct: 535  LYK-AEETMPVTQFTMTTLEELGLLKMDFLGLRTLTVISYAEKEAAKTHPGFSADAVPLD 593

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D ET+ +LT    +G+FQ ES+GMR  +  + P  IED+IA++SLYRPGP+++I  Y   
Sbjct: 594  DPETFAMLTKGQCVGVFQFESAGMRAVIAQLGPTSIEDLIAVISLYRPGPMESIPTYIRN 653

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++  E +   HPL+ P+L  T G I+YQEQVMQI + L GYS   AD++RRAM KK  + 
Sbjct: 654  RHNPELVTYKHPLLKPILDVTYGCIVYQEQVMQICRALGGYSYGRADLVRRAMSKKKHDV 713

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M+K++E F++GA +NG+++  A  IF+ ++ FA Y FNKSHAAAYA +SYQTA++K HYP
Sbjct: 714  MEKEREAFVAGAQQNGVARETANQIFDEMSSFASYAFNKSHAAAYAFVSYQTAYLKCHYP 773

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF+AA +T  +DN +K+ ++  +  +  I+++PP VN     F V    I + L A+K 
Sbjct: 774  REFMAALLTSVLDNTDKVIEYIGECNRMGIKVLPPDVNVSVEGFTVSGEEIRFGLLAVKN 833

Query: 845  VGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +G    R  I E  +   F +  DFC R+  K +N+R +ESL+ +GALDC   +R Q+L 
Sbjct: 834  IGRGFIRELIAERESGGVFQNFSDFCERMYGKDMNKRAVESLIKSGALDCVCKNRNQMLS 893

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
              + I       +K       N+F    G       L        S     E+   G Y 
Sbjct: 894  GYEAILDDIDSAQKRNIAGQINLFDTAAGASKPIHILPNVEELEPSKLLAMEKETTGLYI 953

Query: 964  SGHPLDVYKPILRK------MGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIG 1016
            SGHP+  ++ ++ K        I   EE  + +  G  +R+AA+V S++ K TR G  + 
Sbjct: 954  SGHPMARFQEMVSKNNCTLIADITSAEERGSGVADGTQVRVAAIVNSRRLKSTRGGEMMA 1013

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +V   + +   E   FP
Sbjct: 1014 FVRLEDTSGSMEMLVFP 1030


>gi|220918685|ref|YP_002493989.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-1]
 gi|219956539|gb|ACL66923.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-1]
          Length = 1210

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1080 (38%), Positives = 626/1080 (57%), Gaps = 84/1080 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL +H+ YSLL+GA+ + ++L  + A    ++A+TD  NLF A++F +KA  AG++
Sbjct: 2    PDFVHLHLHTLYSLLDGAIRIKDLLKTVKAKGMSSVAVTDHGNLFGAVDFYKKAKEAGVK 61

Query: 69   PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            PI+G +  +  D     +    G+        ++LL   AEG+  L  L S+ +  +   
Sbjct: 62   PILGMEAYVAGDKGRTDRSERIGR-------HLILLAKNAEGWANLRYLSSKAFT-EGFY 113

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               RI    L++  ++GL+ LT   +G + R         A +    ++ +F     ++ 
Sbjct: 114  YDPRIDKQLLRD-HSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLE 172

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q +   ++    +++ QL     +PLV T ++ ++S ++ +AH+VLM +A +       
Sbjct: 173  VQSNGMREQLDVNAKLAQLGRDEGIPLVGTADAHYVSRQEAKAHEVLMCIASNKTFQDPK 232

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R   D  ++    EM +   D  EAL+NT+ IA  C+  L +    LP F   E    
Sbjct: 233  RLRHDTDGLFVAGPDEMAAALPDFREALDNTLRIAEMCNVELPLGKTFLPSFTLPEG--- 289

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVAD 362
               E++ +   A  GL+ R  +    K  H +D YRQRL+ EL VI +M F GYFLIV D
Sbjct: 290  -MSEDDYIDKLAREGLDRRFRE-IDGKYPHDRDVYRQRLEMELGVIKKMGFPGYFLIVQD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK+++IPVGPGRGSGAGS+ A++L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 348  FINWAKEHHIPVGPGRGSGAGSIVAWSLRITDLDPLRWHLLFERFLNPERVSMPDFDVDF 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ+RRDEVI+YV+ KYG + V QIITFGSL+A++ +RDV R + +P+++ DR+ KL+P D
Sbjct: 408  CQNRRDEVIQYVRGKYGQDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDRIAKLVP-D 466

Query: 483  PAH----PVSLQAIADDSRFREARLAD----PSV----------------DRLLEISQKL 518
            P      P+       D    E RL +    P+V                  LL+I+  L
Sbjct: 467  PVQGKTPPLKELVFGSDKMPAEPRLKELHDKPAVISQWVDDKGVQNKVTTKDLLDIAMSL 526

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R A  HAAG+VI D+PL + VP Y+D +S++ V+QF  + +E AGL+KFDFLGLKT
Sbjct: 527  EGLNRQAGLHAAGVVIADKPLWEYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKT 586

Query: 579  LTLLQKSLDFLAQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            LT++  +L  + +   ++     S IP DD   Y L++   T G+FQ+ESSG  + +  M
Sbjct: 587  LTVIDDALRMVKRNHPEMKDFAASDIPIDDPAVYELISRGDTGGVFQMESSGFTEMVVKM 646

Query: 636  QPDCIEDIIALVSLYRPGPIDN--------IVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            +P   ED+IA  +LYRPGP+D         + VY +RK+G+EK+   HP ++ +L+ T G
Sbjct: 647  KPSRFEDVIAAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVQYPHPSLEKVLEPTYG 706

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            VI+YQEQVMQI+Q+L+GYSL +AD+LRRAMGKK  E M K++  F++GA  NG+ + +A 
Sbjct: 707  VIVYQEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVANGVDEKVAG 766

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             IF+L+ KFA YGFNKSH+AAY +++ QTAW+K HYPVEF+AA ++ E  N +K+     
Sbjct: 767  GIFDLMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHIS 826

Query: 808  DARQFNIQIMPPSVNTPCVDF----------KVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
            +AR   ++++PP VN     F          K    RI + L A++GVG +  + I+EA 
Sbjct: 827  EARASQLEVLPPDVNESDAAFGAFPPGPESPKGSRGRIRFGLGAVRGVGESAVQAIVEAR 886

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
            A  PF SL D   RVDSKK+N++VLE+LV +GALD  G  R QL   +D         + 
Sbjct: 887  ASGPFKSLFDLAGRVDSKKINKKVLEALVKSGALDFEGVPRWQLYFGIDAAISAGASAQA 946

Query: 918  NRTNKHENIFAH--------------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            +R +   ++F                  G    ++T+E++      VR   E+  LGFY 
Sbjct: 947  DRASGQASLFGALAASAATEAKPRYPRPGDAVGEVTVEEWP---ERVRLAFEKEALGFYL 1003

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSE 1022
            +GHPL  Y+  +R+              G+ + +  +V S +++  + KG+R G++T  +
Sbjct: 1004 TGHPLMGYEREVRRYASSTCAAVAQKRHGDKVTVVGVVASLRERMNKEKGTRFGFLTLED 1063


>gi|269469110|gb|EEZ80658.1| DNA polymerase III, alpha subunit [uncultured SUP05 cluster
            bacterium]
          Length = 1150

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1050 (39%), Positives = 621/1050 (59%), Gaps = 54/1050 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  HS YS+    + +  ++DK       AIA+TD  NLF+A++F QK+ + GI+PI
Sbjct: 6    FVHLHCHSEYSVKNSLIRIPKLIDKTKDLGMKAIALTDVGNLFAAVKFYQKSISNGIKPI 65

Query: 71   IGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
             G +L + D   N               S++LL    +GY  L EL+S  YL  Q  + V
Sbjct: 66   FGAELTVKDKAQNF--------------SVLLLCQDRQGYANLSELISLSYLHGQSVEGV 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I    L     +GLIM+   +   +      N +  A +++  +  +F DR Y+++QR 
Sbjct: 112  SITTEQLVN-HHQGLIMIAPHTRSDVAHHLMANQALEAREKVQFWASVFTDRFYLSVQRT 170

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             R  D       ++L     +PLVATN+  FL   DY+AH+  + ++   ++    R + 
Sbjct: 171  GRANDEKYLHLCLELGLESGIPLVATNDVEFLVASDYQAHEARICISQGKLLDDARREKF 230

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP-ILPRFIEKECDDIQKE 306
             + + YLK+  EM ++FSDLP+ L N+VEIA+RC+   ++H    LP F   E   I + 
Sbjct: 231  YSAEQYLKSADEMAALFSDLPQLLANSVEIAKRCNLHFELHKKNYLPNFPVPEGLSIAQF 290

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E E +    AGL  RL +    +    + Y +RL FEL VI +M F GYFLIVADFI W
Sbjct: 291  FEQESK----AGLGKRLEKIKANR----KIYDERLTFELGVIVQMDFPGYFLIVADFIAW 342

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            ++ N+IPVGPGRGSGAGS+ AYAL IT++DP++  LLFERFLNP+R+SMPDFDIDFC DR
Sbjct: 343  SRNNDIPVGPGRGSGAGSLVAYALGITNVDPIKHELLFERFLNPERVSMPDFDIDFCTDR 402

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV  KYG E+V+QIIT+G + AK  +RDVGR L  PY   DR+ K IPND    
Sbjct: 403  RDEVITYVAKKYGQEKVSQIITYGKMAAKGVVRDVGRVLGHPYGFSDRISKSIPNDLKIN 462

Query: 487  VSLQAIA---------DDSRFREARL-----ADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            +S +A+          D  ++    L     ++ SV  L+++S +LEGL R+  THA G+
Sbjct: 463  LS-RALGIFDQKDSKEDKDKWYSEELKQRYDSEESVTALIDLSLELEGLVRNVGTHAGGV 521

Query: 533  VIGDRPLSQLVPMYRDV-RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +I    +S   P+Y+    SD  V+QF+MK +E  GL+KFDFLGL  LT++ K++  +  
Sbjct: 522  LIAPSKISDFCPIYKGPGESDGVVSQFDMKDVEALGLVKFDFLGLSNLTVIDKTVKMIHA 581

Query: 592  RGVK---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            +G+    +D+  +  DD   Y LL    T GIFQLES GMR  L+ ++ D  EDI+A+++
Sbjct: 582  KGLSDELIDIDALSLDDKAVYKLLQRSDTTGIFQLESDGMRGYLKKLKADSFEDIVAMLA 641

Query: 649  LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            LYRPGP+   +V  Y N K+G++     HP+++ +LK T GV +YQEQVM+ AQ+++GYS
Sbjct: 642  LYRPGPLGAGMVDDYINVKHGEDAKYP-HPMLEEILKPTNGVFLYQEQVMKSAQVMAGYS 700

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKKI  EM+KQ++ F+ GA+K  I K  A  IF+L+ KF+ YGFNKSH+
Sbjct: 701  LGGADLLRRAMGKKIASEMEKQRDVFVKGAAKKKIKKEKANEIFDLIDKFSGYGFNKSHS 760

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
             AYA ISYQTAW+K HYP  F+A+ ++ +MD+ +KI     + +   + +  P+V     
Sbjct: 761  VAYAYISYQTAWLKAHYPAAFMASVLSDKMDDTDKIAFTIGEVQNMGLIVNGPNVCESDY 820

Query: 827  DFKVGDNR-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +F + D++ I Y L AIKGVG    + ++ E  A   +  L +FC+R++ K LN+R +E+
Sbjct: 821  EFSIKDDKTIVYGLGAIKGVGEALVQTLVAEREAGGEYKDLFEFCARIEKKSLNKRAIEA 880

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+++GA D FG  R  LL++     K A+  + ++TN    +F   +     +++ +   
Sbjct: 881  LIYSGAFDVFGVDRASLLKTYPKAVKQAEQRQNDQTNGQNTLFNSIQEHAEYELSYDPCP 940

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVS 1003
              +   R + E+ V+G+YF  HP D YK  L+++G+   +++V  +R N  +R+ A++  
Sbjct: 941  RFSFKERLKLEKSVMGYYFYDHPTDEYKDDLKRIGVTLPKDTV--LRNNKEVRVLALISE 998

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +   TR G ++  +   + + +  A  FP
Sbjct: 999  LRYITTRSGDQMASIIIEDGSTKLSAVIFP 1028


>gi|237745551|ref|ZP_04576031.1| DNA polymerase III [Oxalobacter formigenes HOxBLS]
 gi|229376902|gb|EEO26993.1| DNA polymerase III [Oxalobacter formigenes HOxBLS]
          Length = 1153

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/1048 (39%), Positives = 618/1048 (58%), Gaps = 41/1048 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K+ SFVHL++HS YS+++G + +++++   A D QPA+A+TD +NLF  ++F + A   G
Sbjct: 2    KNTSFVHLRLHSEYSIVDGLVRIDDVVGAAAKDGQPALALTDLSNLFGLIKFYKAARKKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI GC        ++ +TN      P+   ++LLV    GY  L EL+SR +L +Q +
Sbjct: 62   VKPIAGC--------DVWITNDVDREKPS--RLLLLVKDRRGYLNLCELLSRAWLENQYR 111

Query: 127  QSVRICLSWLQEIGTE----GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                I + WL+E+       GLI L+G   G I  A      + A+K  L +  +F    
Sbjct: 112  GRAEIRIEWLEELARRDSETGLIALSGAKQGDIGMALDSTGFENAKKCALRWAGIFPGNF 171

Query: 183  YVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            Y+ +QR    G ++Y   Q  +LA   +LP+VAT+   FLS + + AH+    ++   V+
Sbjct: 172  YIEIQRTGQLGMEQYVR-QAAELAEKLQLPVVATHPVQFLSPDQFRAHEARTCISEGEVL 230

Query: 241  SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            S K R R+  +H    +++EM  +F+DLP AL+N VEIARRC+ +L++    LP F   +
Sbjct: 231  SNKKRARLFNEHQCFLSQTEMAQLFADLPGALQNAVEIARRCNLVLELGHHKLPLFPTPD 290

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               + +  E+E R+     LEV        K      Y +RL++E+  I  M FSGYFLI
Sbjct: 291  GMTLDEFLESEARHGLEKRLEVLFPDEEERKARRPV-YDERLNYEIQTIINMGFSGYFLI 349

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI+WAK N +PVGPGRGSGAGS+ AY+L IT++DP+ ++L+FERFLNP+R+SMPDFD
Sbjct: 350  VADFIRWAKNNGVPVGPGRGSGAGSLVAYSLLITNLDPIAYNLIFERFLNPERVSMPDFD 409

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ +YG + V+QI TFG++ AKAA+RDVGR L + Y+  D + KLI
Sbjct: 410  IDFCQHGRDRVIQYVKERYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFCDGISKLI 469

Query: 480  PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++  A  ++    E   ++  V +LL +++++EG+ R+   HA G++I    
Sbjct: 470  PFKPGKQVTIADAKKEEPLLAEREQSEEEVKQLLGLAEQVEGITRNVGMHAGGVLIAPGK 529

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-- 596
            L+   P+Y        V+QF+ K +E+ GL+KFDFLGL TLT+L  ++ ++ Q    +  
Sbjct: 530  LTDFCPLYTQDGESGVVSQFDKKDVEEIGLVKFDFLGLTTLTILDLAVKYIHQLDPAMSG 589

Query: 597  -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             +L  IP +D ET+ LLT   T+ +FQLES GM+  L+  +PD  EDIIALV+LYRPGP+
Sbjct: 590  FELDTIPLNDKETFDLLTRAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPM 649

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G E           +L ET G++IYQEQVMQ+AQ++ GY+L  AD+LRR
Sbjct: 650  DLIPDFCRRKHG-EAFEYPDERAKDILSETYGIMIYQEQVMQMAQVIGGYTLGGADLLRR 708

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM + ++ F  GA+KN + +  A  IF+L+ KFA YGFNKSHA AYA++SYQ
Sbjct: 709  AMGKKDAAEMARHRQIFRDGAAKNNLPEAKADEIFDLMEKFAGYGFNKSHATAYALLSYQ 768

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVDFK-VGD- 832
            TA++K H+   F+AA+M+L MD+ +K++   +DA     ++I+PP +N+    FK VG+ 
Sbjct: 769  TAYLKKHHAAAFMAANMSLAMDDTDKVRVLVEDAVDVCGLEILPPDINSSDFYFKPVGEP 828

Query: 833  --------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
                     +I Y L A+KG G +    I++A  ++PF  L DFC RVD +++NRR +ES
Sbjct: 829  PSVSKKPVTQIRYGLGAVKGSGESAIEAIVQARKERPFRDLFDFCVRVDKRQINRRTIES 888

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ AGA DCF   R  LL S+  +   A    +   N+  ++F  E  T  + +   +  
Sbjct: 889  LIRAGAFDCFKEDRAVLLASV-GLAIEAAEQAEASANQ-VSLFGEED-TVLNAVEYVRVP 945

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                  R   E+ VLGF  SGH    Y    R+       E  A+      R  A +V+ 
Sbjct: 946  HWTEKSRLTEEKGVLGFCLSGHLFHAYAGEARQFAKSRISELEAS---REPRWVAGIVAG 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +  +  ++  V+  + +   E   F
Sbjct: 1003 TRAQMSQRGKMMVVSLDDGSATIEVTVF 1030


>gi|209517596|ref|ZP_03266435.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160]
 gi|209502009|gb|EEA02026.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160]
          Length = 1189

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/1022 (40%), Positives = 610/1022 (59%), Gaps = 40/1022 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F Q+A   G++
Sbjct: 7    PRFVHLRVHSEFSIADGIVRLDDIVAAAAKDGQGALALTDLGNAFGLVRFYQEARGKGVK 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P+   ++LLV    GY  L EL+S+  L +Q +  
Sbjct: 67   PIAGC--------DVWITNPDDRDKPS--RLLLLVKDRRGYLNLCELLSKASLTNQYRGR 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   WL+    EGL+ L+G   G I  A    + + A +    + K+F    Y+ LQR
Sbjct: 117  AEVEAGWLESGLGEGLLALSGAQQGDIGLALAAGNEEAARRNARHWAKVFPGGFYIELQR 176

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
                G ++Y + Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++   R 
Sbjct: 177  CGLPGGEQYVQ-QAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRQ 235

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + Y +++ EM  +F+D+P AL NTV+IA+RC+  L++  P LP F   +   +  
Sbjct: 236  KRFTAEQYFRSQQEMAELFADIPSALANTVQIAKRCNLKLELGKPKLPLFPTPDGMSL-- 293

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RLAQ       +      Y QRL+FE   I +M F GYFLIVAD
Sbjct: 294  --DDYLVQLSKEGLEKRLAQLYPDEAERDAQRATYYQRLEFECGTIIKMGFPGYFLIVAD 351

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 352  FINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDF 411

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG   V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 412  CQHGRDRVIQYVKEKYGANAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 471

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LLE++Q++EGL R+   HA G++I    L+ 
Sbjct: 472  PGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTD 531

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +    K D SL
Sbjct: 532  FCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSL 591

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPGP+D I
Sbjct: 592  GQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLI 651

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 652  PSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 711

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+ NG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 712  KKKPEEMAKHREIFAEGAAVNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 771

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDN---- 833
            +K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP VN     F+ V +     
Sbjct: 772  LKAHHPAEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDVNLSAYRFEPVAETDGKR 831

Query: 834  --RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I Y L AIKG G      I+ A  +  F  + DFC+RVD + +NRR +E+L+ AGA 
Sbjct: 832  SRTIRYGLGAIKGSGQNAIEEILRAREEGRFIDIFDFCNRVDRRIVNRRTIEALIRAGAF 891

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QL+ S+    + A+    N                 + I   ++  +    +
Sbjct: 892  DTLHPNRAQLIASVSLAMEAAEQAAANALQAGLFDMGDAPSQGHELIDEPEWPEKR---K 948

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010
             + E+  LGFY SGH  D YK  +R+       + +  ++ G +  +A ++VS + + T+
Sbjct: 949  LQEEKAALGFYLSGHLFDAYKDEVRRF----VRQKIGELKEGRDKLVAGVIVSLRTQMTQ 1004

Query: 1011 KG 1012
            +G
Sbjct: 1005 RG 1006


>gi|14194701|sp|Q9XDH5|DPO3A_THEAQ RecName: Full=DNA polymerase III subunit alpha
 gi|116667773|pdb|2HPI|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are
            Not Homologous: X-Ray Structure Of Dna Polymerase Iii
 gi|116667774|pdb|2HPM|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are
            Not Homologous: X-Ray Structure Of Dna Polymerase Iii
 gi|5531686|gb|AAD44403.1| DNA polymerase III [Thermus aquaticus]
          Length = 1220

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1091 (39%), Positives = 625/1091 (57%), Gaps = 84/1091 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            F HL  H+ +SLL+GA  L ++L   K    + PA+A+TD  NLF A+EF +KA A G++
Sbjct: 7    FAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATAMGVK 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG +  +  +       +GK        + LL     GYQ L+ L SR YL +   + 
Sbjct: 67   PIIGYEAYVAAESRFD-RKRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYL-EGFYEK 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L+E   +GLI L+G     I +    +   +AE RL     +FGDR ++ +Q 
Sbjct: 125  PRIDREILRE-HAQGLIALSGCLGAEIPQFILQDRLDLAEARLNEDLSIFGDRFFIEIQN 183

Query: 189  HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ + +QV+ + A  + L +VATN+  ++ +ED  AH+VL+A+   T +   +R R
Sbjct: 184  HGLPEQKKVNQVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTTLDDPERWR 243

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEA------LENTVEIARRCSFILQVHAPI---LPRF-- 295
               D  Y+K   EM ++   LPEA       +NTVEIAR C   L +   +   +PRF  
Sbjct: 244  FPCDEFYVKTPEEMRAM---LPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPRFPL 300

Query: 296  ------------------IEKECDDIQK-----------------------EEENELRNK 314
                              + +  D I +                       E    +  K
Sbjct: 301  PEGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERALAEALARVEEK 360

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
            A   L  RL      + + A+    R  +EL+VI RM F GYFLIV D+I WA+ + + V
Sbjct: 361  AWEELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARGHGVSV 420

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
            GPGRGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF    RD VI+YV
Sbjct: 421  GPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYV 480

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIA 493
            + +YG ++VAQI TFGSL +KAAL+DV R   +P+ + + L KLIP     P  LQ AI 
Sbjct: 481  RERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLQEAIQ 540

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                 R     D  + +++E++ +LEGL RHAS HAAG+VI   PL+ LVP+ RD +   
Sbjct: 541  VVPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRD-QEGR 599

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLL 612
            PVTQ++M  +E  GL+K DFLGL+TLT L ++   + + +GV++D   +P DD +T+ LL
Sbjct: 600  PVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVELDYDRLPLDDPKTFELL 659

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T G+FQLES GM   + G++P  +EDIIALVSLYRPGP+++I  Y  R +G+E + 
Sbjct: 660  SRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHHGQEPVS 719

Query: 673  -----SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
                      + P+L ET G+ +YQEQ+MQIA  ++GYSL EAD+LRRAMGKK  EEM K
Sbjct: 720  YAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKRVEEMQK 779

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +ERF+ GA + G+ +  A  +F++L  FA+YGFNKSHAAAY+++SYQTA++K HYPVEF
Sbjct: 780  HRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKAHYPVEF 839

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +AA +++E  + +K+ ++ +DAR   I ++PP VN    DFKV    I + L+A+K VG 
Sbjct: 840  MAALLSVERHDSDKVAEYIRDARALGIPVLPPDVNRSGFDFKVVGEEILFGLSAVKNVGE 899

Query: 848  TTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
              AR I+E      PF SL DF  R+  + +N+R LESLV AGALD FG  R +LL SL+
Sbjct: 900  MAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDAFG-DRARLLASLE 958

Query: 907  NIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             + ++A    +   +    +FA  E+    +   L++ ++    +R+E E   LG Y SG
Sbjct: 959  PLLRWAAETRERGRSGLVGLFAEVEEPPLVEASPLDEITM----LRYEKE--ALGIYVSG 1012

Query: 966  HPLDVYKPILRKMG---IKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            HP+  Y P LR++    I+   E V  + G   + L+ MV    +K TR G  +   T S
Sbjct: 1013 HPVLRY-PGLREVASCTIEELSEFVRELPGKPKVLLSGMVEEVVRKPTRSGGMMARFTLS 1071

Query: 1022 EPAKEYEANFF 1032
            +     E   F
Sbjct: 1072 DETGALEVVVF 1082


>gi|86159864|ref|YP_466649.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-C]
 gi|85776375|gb|ABC83212.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-C]
          Length = 1210

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1080 (38%), Positives = 627/1080 (58%), Gaps = 84/1080 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL +H+ YSLL+GA+ + ++L  + A    ++A+TD  NLF A++F +KA  AG++
Sbjct: 2    PDFVHLHLHTLYSLLDGAIRIKDLLKTVKAKGMSSVAVTDHGNLFGAVDFYKKAKEAGVK 61

Query: 69   PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            PI+G +  +  D     +    G+        ++LL   AEG+  L  L S+ +  +   
Sbjct: 62   PILGMEAYVAGDKGRTDRSERIGR-------HLILLAKNAEGWANLRYLSSKAFT-EGFY 113

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               RI    L++  ++GL+ LT   +G + R         A +    ++ +F     ++ 
Sbjct: 114  YDPRIDKQLLRD-HSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLE 172

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q +   ++    +++ QL     +PLV T ++ ++S ++ +AH+VLM +A +       
Sbjct: 173  VQSNGMREQLDVNAKLAQLGRDEGIPLVGTADAHYVSRQEAKAHEVLMCIASNKTFQDPK 232

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R   D  ++    EM +   D  EAL+NT+ IA  C+  L +    LP F   E    
Sbjct: 233  RLRHDTDGLFVAGPDEMAAALPDFREALDNTLRIAEMCNVELPLGKTFLPSFTLPEG--- 289

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVAD 362
               E++ +   A  GL+ R  +    K  H +D YRQRL+ EL VI +M F GYFLIV D
Sbjct: 290  -MSEDDYIVKLAREGLDRRFRE-IDGKYPHDRDLYRQRLEMELGVIKKMGFPGYFLIVQD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK+++IPVGPGRGSGAGS+ A++L ITD+DPLR++LLFERFLNP+R+SMPDFD+DF
Sbjct: 348  FINWAKEHHIPVGPGRGSGAGSIVAWSLRITDLDPLRWNLLFERFLNPERVSMPDFDVDF 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ+RRDEVI+YV+ KYG + V QIITFGSL+A++ +RDV R + +P+++ DR+ KL+P D
Sbjct: 408  CQNRRDEVIQYVRGKYGQDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDRIAKLVP-D 466

Query: 483  PAH----PVSLQAIADDSRFREARLAD----PSV------DR----------LLEISQKL 518
            P      P+       D    E RL +    P+V      D+          LL+I+  L
Sbjct: 467  PVQGKTPPLKELVFGSDKMPAEPRLKELYDKPTVISQWVDDKGVQNKVTTKDLLDIAMSL 526

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R A  HAAG+VI D+PL + VP Y+D +S++ V+QF  + +E AGL+KFDFLGLKT
Sbjct: 527  EGLNRQAGLHAAGVVIADKPLWEYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKT 586

Query: 579  LTLLQKSLDFLAQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            LT++  +L  + +   ++     S IP DD   Y L++   T G+FQ+ESSG  + +  M
Sbjct: 587  LTVIDDALRMVKRNHPEMKDFAASDIPIDDPAVYELISRGDTGGVFQMESSGFTEMVVKM 646

Query: 636  QPDCIEDIIALVSLYRPGPIDN--------IVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            +P   ED+IA  +LYRPGP+D         + VY +RK+G+EK+   HP ++ +L+ T G
Sbjct: 647  KPSRFEDVIAAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVQYPHPSLEKVLEPTYG 706

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            VI+YQEQVMQI+Q+L+GYSL +AD+LRRAMGKK  E M K++  F++GA  NG+   +A 
Sbjct: 707  VIVYQEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVANGVDDKVAG 766

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             IF+L+ KFA YGFNKSH+AAY +++ QTAW+K HYPVEF+AA ++ E  N +K+     
Sbjct: 767  GIFDLMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHIS 826

Query: 808  DARQFNIQIMPPSVNTPCVDF----------KVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
            +AR   ++++PP VN     F          K    RI + L A++GVG +  + I+EA 
Sbjct: 827  EARASQLEVLPPDVNESDAAFGAFPPGAESPKGSRGRIRFGLGAVRGVGDSAVQAIVEAR 886

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
            A  PF SL D   RVDSKK+N++VLE+LV +GALD  G  R QL   +D         + 
Sbjct: 887  ASGPFKSLFDLAGRVDSKKINKKVLEALVKSGALDFEGVPRWQLYFGIDAAIAAGASAQA 946

Query: 918  NRTNKHENIFAH--------------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            +R +   ++F                  G    ++ +E++      VR   E+  LGFY 
Sbjct: 947  DRASGQASLFGALTPSAATEAKPRYPRPGDAVGEVNVEEWP---ERVRLAFEKEALGFYL 1003

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSE 1022
            +GHPL  Y+  +R+              G+ + +  +V S +++  + KG+R G++T  +
Sbjct: 1004 TGHPLMGYEREVRRYASSTCAAVAHKRHGDKVTVVGVVASLRERMNKEKGTRFGFLTLED 1063


>gi|116667785|pdb|2HQA|A Chain A, Crystal Structure Of The Catalytic Alpha Subunit Of E.
           Coli Replicative Dna Polymerase Iii
          Length = 917

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/923 (43%), Positives = 561/923 (60%), Gaps = 36/923 (3%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P FVHL+VHS YS ++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4   PRFVHLRVHSDYSXIDGLAKTAPLVKKAAALGXPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64  PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRXGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +P  Y ++  E   +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233 NYSPQQYXRSEEEXCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-----XS 287

Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +  F GYFLIV +F
Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQXGFPGYFLIVXEF 347

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+S PDFD+DFC
Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSXPDFDVDFC 407

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            ++RD+VI +V + YG + V+QIITFG+  AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408 XEKRDQVIEHVADXYGRDAVSQIITFGTXAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              ++ +A   + +  E   AD  V  L++ ++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468 GXTLA-KAFEAEPQLPEIYEADEEVKALIDXARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
           P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEXINKRRAKNGEPPLDI 586

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
           + IP DD +++  L    T  +FQLES G +  ++ +QPDC ED IALV+L+RPGP+ + 
Sbjct: 587 AAIPLDDKKSFDXLQRSETTAVFQLESRGXKDLIKRLQPDCFEDXIALVALFRPGPLQSG 646

Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQV QIAQ+LSGY+L  AD
Sbjct: 647 XVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVXQIAQVLSGYTLGGAD 706

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRA GKK  EE  KQ+  F  GA KNGI+  +A  IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707 XLRRAXGKKKPEEXAKQRSVFAEGAEKNGINAELAXKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
           +SYQT W+K HYP EF AA  T + DN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767 VSYQTLWLKAHYPAEFXAAVXTADXDNTEKVVGLVDECWRXGLKILPPDINSGLYHFHVN 826

Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           D+  I Y + AIKGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIXSG 886

Query: 890 ALDCFGYSRMQLLQSLDNIQKYA 912
           A D  G  R  L  SL +  K A
Sbjct: 887 AFDRLGPHRAALXNSLGDALKAA 909


>gi|257092573|ref|YP_003166214.1| DNA polymerase III subunit alpha [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
 gi|257045097|gb|ACV34285.1| DNA polymerase III, alpha subunit [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
          Length = 1156

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1045 (39%), Positives = 617/1045 (59%), Gaps = 51/1045 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL++HS YS+ +G + L++ + + A    PA+A++D  N+F  ++F   A + GI+PI
Sbjct: 6    FIHLRLHSEYSITDGIVRLDDAVARAAGYGMPALALSDLANVFGLVKFYSSARSKGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + I         N G    P    ++LL  +  GY +L EL+SR YL  + +    
Sbjct: 66   LGSDVCI--------ANDGDPDRPY--RLLLLCRSRPGYLQLCELLSRAYLAPRVRGRAE 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L+E+G +GLI L+G ++G +  A    + ++A  R   ++K F    Y+ +QR  
Sbjct: 116  ITRRMLEEVGVDGLIALSGAAAGDVGEALLQGNQELAANRAARWEKTFPGAFYLEVQR-- 173

Query: 191  GYDRYRESQVV----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             Y + ++  +V     LA    LPLVAT+   FL  +D++AH+  + +A   ++    RP
Sbjct: 174  -YGQAQQEALVAATADLAGELGLPLVATHPIQFLERDDFKAHEARVCIAEGYMLGDARRP 232

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R+ T + Y K+  EM+++F DLPEAL N+VEIA+RC+  + +    LP F       +  
Sbjct: 233  RLHTEEQYFKSADEMLALFGDLPEALANSVEIAKRCNLQITLGKSYLPDFPTPAGVTL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ LR +AVAGLE+RL Q       +      Y  RL  E + I +M F GYFLIVAD
Sbjct: 291  --DDFLRQQAVAGLEIRLQQLFPDPDVRTAERAPYDARLQLETDTIVQMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N+ PVGPGRGSGAGSV AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKHNSCPVGPGRGSGAGSVVAYALGITDLDPLRYALLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQD R  VI YV+ KYG   V+QI+TFG++ +KA +RDVGR L +PY+  D+L KLIP +
Sbjct: 409  CQDNRWRVIEYVRQKYGAAAVSQIVTFGTMSSKAVIRDVGRVLDLPYNFCDQLSKLIPVE 468

Query: 483  PAHPVSL-QAIADDSRFREARLAD-PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
               P+SL +AIA + +  +AR+ D   V  L  ++ +LE L R+   HA G++I    L+
Sbjct: 469  TNKPLSLAKAIAAEPQL-QARIDDEEEVRDLFALAARLEDLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
               P+Y      + V+QF+   +EK GL+KFDFLGL+ LT+++ +L ++ Q  GV+ DL+
Sbjct: 528  DFCPVYSADGGSV-VSQFDKDDVEKVGLVKFDFLGLRNLTIIELALKYVEQLSGVRPDLA 586

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             + FDD + Y +L    T  IFQ+ES GM++ +  + PD  EDIIA+++LYRPGP+ + +
Sbjct: 587  TMAFDDPQAYQILKDGNTTAIFQVESEGMKKLVRKLAPDRFEDIIAVLALYRPGPLGSGM 646

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            V  +  RK G++KI      +   L+ T GVI+YQEQVMQIAQ++ GY+L  AD+LRRAM
Sbjct: 647  VDDFILRKKGQQKIEYYIDDLKACLEPTYGVIVYQEQVMQIAQIIGGYTLGAADLLRRAM 706

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM   ++    GA K G  + +A+ +F+L+ KFA+YGFNKSH AAYAV++Y TA
Sbjct: 707  GKKKAEEMALHRDLMREGARKKGYDEKLAMQLFDLMEKFAEYGFNKSHTAAYAVVTYHTA 766

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIY 836
            W+K H+   F+AA+++ +MD  + +K F  DA    ++I+ P VN     F  V  + + 
Sbjct: 767  WLKAHHCAAFMAATLSSDMDVTDTVKIFHDDAINNGLRILGPDVNASEYRFMPVDRSTVR 826

Query: 837  YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y L A+KG G      I++  SA   F  L DFC RVD + +NRR +E+L+ AGA D   
Sbjct: 827  YGLGAVKGTGEQAVNAILKTRSAAGAFRDLFDFCRRVDKRLVNRRTIEALIRAGAFDSLD 886

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEKGTFSDK------ITLEKFSVENS 948
              R +LL S+    + A+  E+N       +IF  E G   D+      + + ++S    
Sbjct: 887  SHRARLLASVGIAMEAAEQAERNAMQVSLFDIF--EAGGEEDREHGPQYVEVARWSERQ- 943

Query: 949  SVRFENEQRVLGFYFSGHPL-DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +   E+  LGFYFSGHP   V   + R +  +    +    R     LA +VV  + K
Sbjct: 944  --KLNEEKLALGFYFSGHPFHSVQAEVSRFVRTR---LAALEARKEVQWLAGLVVGVRSK 998

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T +G  + +V   + +   E + F
Sbjct: 999  LTARGKMV-FVQLDDGSTSLEVSVF 1022


>gi|87118611|ref|ZP_01074510.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121]
 gi|86166245|gb|EAQ67511.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121]
          Length = 1136

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/1034 (40%), Positives = 618/1034 (59%), Gaps = 55/1034 (5%)

Query: 29   LNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQ 88
            +  +L   A    PA+A+TD NNL   + F + A  +GI+PI G  + I+    L+  ++
Sbjct: 1    MKGLLGATAGLNMPAVAMTDENNLCGFVRFYKGAMGSGIKPICGADVVIEADGELEENHR 60

Query: 89   GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLT 148
                      + LL  T +GY+ +IE++S+ Y L Q +    +  +W+ E   E +I+++
Sbjct: 61   ----------LTLLAMTNKGYKNIIEVISKGYQLGQFEGRPIVQRAWV-EAHQEDVILIS 109

Query: 149  GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR--GYDRYRESQVVQLAYT 206
            G   G + +        +A+++L  + ++F +R YV LQR    G + Y  + VV LA  
Sbjct: 110  GAQYGDVGQYLALQKPTLAKQKLERWMQIFPNRFYVELQRTSRIGEEDYIHA-VVPLATE 168

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
               P+VATN+  FL  ED+E+H+  + +    T+   + + R + + YLK+  EM ++F 
Sbjct: 169  LACPVVATNDVRFLKREDFESHEARVCIHDGVTLDDPRRKKRYSEEQYLKSADEMQALFD 228

Query: 266  DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
            D+PEALENTVEIA+RC+  + +    LP F   E   +    +      +  GLE R   
Sbjct: 229  DIPEALENTVEIAKRCNVDVLLGKYFLPDFPVPEGMTM----DVFFSELSFKGLEERF-- 282

Query: 326  GAIAKGY------HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
              + K Y        Q+Y  RLDFELN+I +M F GYFLIV DFIQWAK N+IPVGPGRG
Sbjct: 283  DFLVKKYGDRIADKKQEYWDRLDFELNIINQMGFPGYFLIVMDFIQWAKDNDIPVGPGRG 342

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            SGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDFC D RD+VI YV   YG
Sbjct: 343  SGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDNRDKVIDYVAQTYG 402

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V+QIITFG++ AKA +RDV R    PYS  D+L KLIP +    ++ +A+ ++   +
Sbjct: 403  RDAVSQIITFGAMAAKAVVRDVARVQGKPYSLGDKLSKLIPFEIGMTLN-KALEEEPMLK 461

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
            E    D     ++E++  LEG+ R+   HA G+VI    L+   P+Y +      VTQ++
Sbjct: 462  EFIENDEEAGDVMEMALSLEGVVRNFGKHAGGVVIAPTKLTDFSPLYCEEDGSGLVTQYD 521

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSL----DFLAQRG-VKVDLSLIPFDDHETYHLLTT 614
               +E+AGL+KFDFLGLKTLT++  ++    D  A+ G   +D++LI  +D  TY +L  
Sbjct: 522  KNDVEEAGLVKFDFLGLKTLTVVDWAMKNINDIQAREGKPALDITLIDLEDKPTYDMLQR 581

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIV 672
              T  +FQLES GM++ ++ + P   EDI+ALV+LYRPGP+ + +V  + NRK+G+ ++ 
Sbjct: 582  AETTAVFQLESRGMKELIKKLLPSRFEDIVALVALYRPGPLGSGMVDDFINRKHGRSELA 641

Query: 673  SIHP------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              HP      LI P+L+ T G+I+YQEQVMQIAQ+L+ +SL  AD+LRRAMGKK  E M 
Sbjct: 642  FPHPDYQHDDLI-PVLEPTYGIILYQEQVMQIAQVLARFSLGGADLLRRAMGKKKPEVMA 700

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +Q+  F+ GA K  IS+ ++ NIF+L+ KFA YGFNKSH+AAYA++SYQTAW+K HYP  
Sbjct: 701  EQRLLFMEGAGKYDISEELSGNIFDLMEKFAGYGFNKSHSAAYALVSYQTAWLKHHYPAP 760

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR---IYYSLAAIK 843
            F+AA ++ +M N +KI  F ++ R   +Q+  P+VN     F V  NR   I Y L AIK
Sbjct: 761  FMAAVLSADMQNTDKIVIFIEECRAMKLQLELPNVNESVYKFTV--NRAGAIVYGLGAIK 818

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG      I +A  + PF+ + DFC R+  KK+N+RV+E+L+ +GALD  G +R  L  
Sbjct: 819  GVGEGPIEAITQAREEGPFEHIFDFCKRI-GKKVNKRVMEALIRSGALDQIGPNRATLFA 877

Query: 904  SLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFS--DKITLEKFSVENSSVRFENEQRVL 959
            S+D   K A  + K+      ++F  A E+ T    D+I ++      S  R + E+  L
Sbjct: 878  SIDEALKRADRIAKDEDAGMMDLFGVAVEESTEGAYDEIGIQ--HEWPSRQRLDGEKDTL 935

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G Y +GHP+D Y+  +R+   +     +   RG++  +A ++V  +  K++KG  I +VT
Sbjct: 936  GLYVTGHPIDDYEKEIRRFA-RSRIVDLQPKRGDSQIMAGLIVEMRITKSKKGGNIAFVT 994

Query: 1020 FSEPAKEYEANFFP 1033
              + +   E   FP
Sbjct: 995  LDDRSARIEVTVFP 1008


>gi|222529253|ref|YP_002573135.1| DNA polymerase III DnaE [Caldicellulosiruptor bescii DSM 6725]
 gi|222456100|gb|ACM60362.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor bescii DSM
            6725]
          Length = 1139

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/1040 (38%), Positives = 613/1040 (58%), Gaps = 44/1040 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA  ++ + +++      A+ ITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHLHTEYSLLDGACRIDRLFERVKDLNMNAVGITDHGAMYGVIDFYKTAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSI-------VLLVSTAEGYQRLIELVSRMYLL 122
            IIGC++ +            +T F   P+I       VLL    +GY+ L ++VS +  +
Sbjct: 62   IIGCEVYL----------APRTRFDKEPNIDNDIHHLVLLAMDNDGYRNLSKIVS-IGFV 110

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +      R+    L +  ++GLI LT   +G I +       +     +  +K++FG+  
Sbjct: 111  EGFYYKPRVDREVLSKY-SKGLIALTSCLAGEIPKLILREQKEKLYDAINFYKEVFGENF 169

Query: 183  YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y  LQ H     R+  +++++L+  +++PLVATN+  +L  ED   HD+L+ +     +S
Sbjct: 170  YFELQYHYIDEQRFVNNELMRLSKKYQIPLVATNDVHYLRREDRNLHDILLCIQTGKTIS 229

Query: 242  QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              +R    T + YLK+  EM  +F  +PEAL+NT+EIA +C+   +     LP+F   + 
Sbjct: 230  DSNRMEFPTDEFYLKSPEEMQQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKF---QL 286

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             + + +    L+  A+ G + R      A    A D   RL  EL VI  M F  YFLIV
Sbjct: 287  PEGKSDAFEYLKELALEGFKKRYKNDDKA----AYD---RLMMELQVIKDMGFVEYFLIV 339

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI +AK+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DI
Sbjct: 340  QDFINYAKQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDI 399

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC  RR EVI YV  KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP
Sbjct: 400  DFCYQRRQEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGVPYSQVDEIAKMIP 459

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              P   +  +A+  +   ++    + +V R+++ ++ LEG+ RHAS HAAG+VI   P++
Sbjct: 460  FSPGMTID-KALEINHDLKKIYEQNDTVRRIIDTARNLEGMPRHASVHAAGVVISSCPIT 518

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+ R    D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL 
Sbjct: 519  DLVPLAR--TDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLD 576

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I ++D   Y  ++   T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I 
Sbjct: 577  RIDYNDKNVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIP 636

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            VY   KN +EKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM K
Sbjct: 637  VYIQNKNNREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAK 696

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  + + ++K+RFI GA  NGI K  A  IF ++  FA Y FNKSHAAAYA+++YQTA++
Sbjct: 697  KKADILMEEKDRFIEGAMANGIDKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYL 756

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K +Y +EF+A+ +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + L
Sbjct: 757  KKYYTIEFMASLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGL 816

Query: 840  AAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIK +G     HI++    K  F  L DF  RVD+  +N+R++E+L+ +GA D  G +R
Sbjct: 817  RAIKSLGENVIAHILKEREKKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGLNR 876

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              LL S+++I    Q  +K   N ++  F    G  ++    +      +    + E+  
Sbjct: 877  NSLLASVEDILAIKQTKKK---NANQFSFFEISGNENESFVYKNMPQPTAQELMKMEKDT 933

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK-----QQKKTRKGS 1013
            +G Y S HPL+ Y   + K  I    E  A    +  +   ++V       + K T+   
Sbjct: 934  IGVYISSHPLEKYTEEISKYNITPLSEISAMSEEDEYKFEQILVCGILKEVKVKLTKNNL 993

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             + +    +     E  FFP
Sbjct: 994  TMAFAKLEDLTDSVEVLFFP 1013


>gi|312793441|ref|YP_004026364.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kristjanssonii
            177R1B]
 gi|312180581|gb|ADQ40751.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
            kristjanssonii 177R1B]
          Length = 1140

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/1041 (38%), Positives = 617/1041 (59%), Gaps = 46/1041 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA  ++ + +++      A+AITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGVMYGVIDFYKAAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSI-------VLLVSTAEGYQRLIELVSRMYLL 122
            IIGC++ +            +T F   P+I       VLL    EGY+ L ++VS +  +
Sbjct: 62   IIGCEVYL----------APRTRFDKEPNIDNDIHHLVLLAMDNEGYKNLSKIVS-IGFV 110

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +      R+    L +  ++GL+ LT   +G I +       +     +  +K++FG+  
Sbjct: 111  EGFYYKPRVDREVLSKY-SKGLVALTSCLAGEIPKLILREQKEKLYDAISFYKEVFGENF 169

Query: 183  YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y  LQ H     R+  +++++L+  +++PLVATN+  +L  ED   HD+L+ +     +S
Sbjct: 170  YFELQYHYIDEQRFVNNELMRLSKKYQIPLVATNDVHYLRREDRNLHDILLCIQTGKTIS 229

Query: 242  QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              +R    T + YLK+  EM  IF  +PEAL+NT+EIA +C+   +     LP+F   + 
Sbjct: 230  DSNRMEFPTDEFYLKSPEEMQQIFGYIPEALKNTLEIAEKCNVEFEFGKINLPKF---QL 286

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             + + +    L+  A+ G + R ++   A    A D   RL  EL VI  M F  YFLIV
Sbjct: 287  PEGKSDAFEYLKELALEGFKKRYSKDDKA----AYD---RLMMELQVIKDMGFVEYFLIV 339

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI +AK+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DI
Sbjct: 340  RDFINYAKQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDI 399

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC  RR EVI YV  KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP
Sbjct: 400  DFCYQRRQEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGIPYSQVDEIAKMIP 459

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              P   +  +A+  +   ++    + +V ++++ ++ LEG+ RHAS HAAG+VI   P++
Sbjct: 460  FSPGMTID-KALEINHELKKIYEQNDTVRKIIDTARNLEGMPRHASVHAAGVVISSCPIT 518

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+ R    D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL 
Sbjct: 519  DLVPLAR--TDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLD 576

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I ++D   Y  ++   T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I 
Sbjct: 577  RIDYNDKNVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIP 636

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            VY   KN +EKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM K
Sbjct: 637  VYIQNKNNREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAK 696

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  + + ++K+RFI GA  NG+ K  A  IF ++  FA Y FNKSHAAAYA+++YQTA++
Sbjct: 697  KKADILMEEKDRFIEGAMANGVEKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYL 756

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K +Y +EF+ + +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + L
Sbjct: 757  KKYYTIEFMTSLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGL 816

Query: 840  AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIK +G     HI+ E      F  L DF  RVD+  +N+R++E+L+ +GA D  G +R
Sbjct: 817  RAIKSLGENVIAHILKEREVKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGINR 876

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              LL S+++I    Q  +K   N ++  F    G  ++    +      +    + E+  
Sbjct: 877  NSLLASVEDILVLKQAKKK---NANQFSFFEISGNENESFEYKNMPQPTAQELMKMEKDT 933

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATI------RGNNIRLAAMVVSKQQKKTRKG 1012
            +G Y S HPL+ Y   + K  +    E ++T+      +   I +  ++   + K T+  
Sbjct: 934  IGIYISSHPLERYTEEISKYNVTPLSE-ISTMSEEDEYKFEQILVCGILKEVKVKLTKNN 992

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + +    +     E  FFP
Sbjct: 993  QTMAFAKLEDLTDSVEVLFFP 1013


>gi|312127676|ref|YP_003992550.1| DNA polymerase III subunit alpha [Caldicellulosiruptor hydrothermalis
            108]
 gi|311777695|gb|ADQ07181.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
            hydrothermalis 108]
          Length = 1140

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/1042 (38%), Positives = 611/1042 (58%), Gaps = 48/1042 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA  ++ + +++      A+AITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGAMYGVIDFYKAAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSI-------VLLVSTAEGYQRLIELVSRMYLL 122
            IIGC++ +            +T F   P+I       VLL    +GY+ L ++VS +  +
Sbjct: 62   IIGCEVYL----------APRTRFDKEPNIDNDIHHLVLLAMDNDGYRNLSKIVS-IGFV 110

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +      R+    L +  ++GL+ LT   +G I +       +     +  +K++FG+  
Sbjct: 111  EGFYYKPRVDREVLSKY-SKGLVALTSCLAGEIPKLILREQKEKLYDAISFYKEVFGENF 169

Query: 183  YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y  LQ H     R+  +++++L+  +++PLVATN+  +L  ED   HD+L+ +     +S
Sbjct: 170  YFELQYHYIDEQRFVNNELMRLSKKYQIPLVATNDVHYLRREDRNLHDILLCIQTGKTIS 229

Query: 242  QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              +R    T + YLK+  EM  +F  +PEAL+NT+EIA +C+   +     LP+F     
Sbjct: 230  DSNRMEFPTDEFYLKSPEEMQQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKF----- 284

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFL 358
                  +  E +N A   L+  LA     K Y   D     RL  EL VI  M F  YFL
Sbjct: 285  ------QLPEGKNDAFEYLK-ELALEGFKKRYKNDDKAAYDRLMMELQVIKDMGFVEYFL 337

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI +AK+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD 
Sbjct: 338  IVQDFINYAKQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDI 397

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC  RR EVI YV  KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+
Sbjct: 398  DIDFCYQRRQEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGVPYSQVDEIAKM 457

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +P  P   +  +A+  +   ++    + +V R+++ ++ LEG+ RHAS HAAG+VI   P
Sbjct: 458  VPFSPGMTID-KALEINHDLKKIYEQNDTVRRIIDTARNLEGMPRHASVHAAGVVISSCP 516

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            ++ LVP+ R    D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++D
Sbjct: 517  ITDLVPLAR--TDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEID 574

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  I ++D   Y  ++   T G+FQLESSGM+Q +  ++P+ +EDIIA +SL+RPGP+D 
Sbjct: 575  LDRIDYNDKNVYEFISEGNTNGVFQLESSGMKQFMRELKPENLEDIIAGISLFRPGPMDQ 634

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I VY   KN +EKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM
Sbjct: 635  IPVYIQNKNNREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAM 694

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             KK  + + ++K+RFI GA  NGI K  A  IF ++  FA Y FNKSHAAAYA+++YQTA
Sbjct: 695  AKKKADILMEEKDRFIEGAMANGIDKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTA 754

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +Y +EF+ + +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I +
Sbjct: 755  YLKKYYTIEFMTSLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRF 814

Query: 838  SLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIK +G     HI++   +K  F  L DF  RVD+  +N+R++E+L+ +GA D  G 
Sbjct: 815  GLRAIKSLGENVIAHILKEREEKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGI 874

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LL S+++I    Q  +K   N ++  F    G  ++    +      +    + E+
Sbjct: 875  NRNSLLASVEDILVIKQAKKK---NANQFSFFEISGNENESFEYKNMPQPTAQELMKMEK 931

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK-----QQKKTRK 1011
              +G Y S HPL+ Y   + K  +    E  A    +  +   ++V       + K T+ 
Sbjct: 932  DTIGIYISSHPLERYTEEISKYNVTPLSEISAMSEEDEYKFEQILVCGILKEVKVKLTKN 991

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
               + +    +     E  FFP
Sbjct: 992  NQTMAFAKLEDLTDSVEVLFFP 1013


>gi|146296832|ref|YP_001180603.1| DNA polymerase III DnaE [Caldicellulosiruptor saccharolyticus DSM
            8903]
 gi|145410408|gb|ABP67412.1| DNA polymerase III catalytic subunit, DnaE type [Caldicellulosiruptor
            saccharolyticus DSM 8903]
          Length = 1141

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/1042 (38%), Positives = 620/1042 (59%), Gaps = 48/1042 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+GA+ + ++ +++      +IAITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHVHTEYSLLDGAVRIESLFERVRQLNMHSIAITDHGAMYGVVDFYKAAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSI-------VLLVSTAEGYQRLIELVSRMYLL 122
            IIGC++ +            ++ F   P+I       VLL    EGY+ L ++VS +  +
Sbjct: 62   IIGCEVYL----------APRSRFDKEPNIDNDIHHLVLLAIDNEGYKNLSKIVS-IGFV 110

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +      R+    L +  ++GLI LT   +G I +    +  +     +  +K +FG   
Sbjct: 111  EGFYYKPRVDREILSKY-SKGLIALTSCLAGEIPKFILRDQKEKLMDAIGFYKDVFGCNF 169

Query: 183  YVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            Y  LQ H G D  R+  S++++L+  +++P+VATN+  +L  ED E HD+L+ +     +
Sbjct: 170  YFELQYH-GIDEQRFVNSELIRLSKKYQIPVVATNDVHYLKREDREIHDILLCIQTGKTI 228

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
               +R    T + YLK+  EM  +F  +PE+L+NT+EIA +C+   +     LP+F   +
Sbjct: 229  HDSNRMEFPTSEFYLKSAQEMEEVFGYIPESLKNTLEIAEKCNVEFEFGKINLPKF---Q 285

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              + + +    L+  A AG E R ++   A    A D   RL  ELNVI  M F+ YFLI
Sbjct: 286  LPEGKSDAFEYLKELAFAGFEKRYSKENKA----AYD---RLLMELNVIKDMGFTEYFLI 338

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI +AK+NNI VGPGRGS AGS+ AY L IT++DP++++LLFERFLNP+R+SMPD D
Sbjct: 339  VHDFINYAKQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYNLLFERFLNPERVSMPDID 398

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC  RR EVI YV NKYG ++V+QIITFG++ A+A++RDVGR L +PY+QVD + K++
Sbjct: 399  IDFCYQRRQEVIDYVTNKYGKDKVSQIITFGTMAARASIRDVGRVLGVPYAQVDEIAKMV 458

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P  P   +  +A+  +   ++    + +V R+++ ++ +EG+ RH S HAAG+VI   P+
Sbjct: 459  PFSPGMTID-KALEVNHDLKKIYEQNETVKRIIDTARSIEGMPRHTSVHAAGVVISSCPI 517

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
            + LVP+ R    D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + R +++DL
Sbjct: 518  TDLVPLAR--TEDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELIKKHRKIEIDL 575

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I ++D   Y  ++   T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I
Sbjct: 576  DKIDYNDRSVYQFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQI 635

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             VY   KN KEKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM 
Sbjct: 636  PVYIQNKNNKEKIEYLHPKLEPILNVTYGCIVYQEQVMQIFRELAGYSLGRADLVRRAMA 695

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  + + ++++RFI GA  NG+ +  A  IFE++  FA Y FNKSHAAAYA+++YQTA+
Sbjct: 696  KKKADILMEERDRFIEGAVANGVDRQTAEKIFEIIEDFASYAFNKSHAAAYAILAYQTAY 755

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K ++ +EF+ + +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + 
Sbjct: 756  LKKYFTIEFMTSLITSVMNSNEKVGMYIEECRRFGISILPPDINKSSYDFTIEGNSIRFG 815

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIK +G     HI+ E   +  F  L DF  RVD+  +N+R++E+L+ +GA D    +
Sbjct: 816  LRAIKSLGENVISHILKEREQNGEFKDLYDFVMRVDTNTVNKRIIENLIKSGAFDFTKIN 875

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTN-KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R  LL S+++I    Q  +KN        I   +   FS K   E  + E      + E+
Sbjct: 876  RNSLLASVEDILTIKQSQKKNANQITFFEISDDQTKIFSYKDLPEPTTEE----LLQMEK 931

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK-----QQKKTRK 1011
              +G Y SGHPL+ Y  ++ K  +    E       +  +   ++V       + K T+ 
Sbjct: 932  DTIGIYISGHPLEKYGDLISKYNVVSLAELSNMTEDDEYKYQQILVCGILKEVKIKLTKN 991

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
               + +    +     E  FFP
Sbjct: 992  NQTMAFAKIEDLTDTLEVLFFP 1013


>gi|299136806|ref|ZP_07029989.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX8]
 gi|298601321|gb|EFI57476.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX8]
          Length = 1177

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1057 (39%), Positives = 613/1057 (57%), Gaps = 73/1057 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  F HL +H+ YSLL+GA  ++ +   +    Q + A+TD  N++ A+ F        +
Sbjct: 2    AAEFTHLHLHTDYSLLDGACDVDKLAKHLVKIGQTSAAMTDHGNIYGAVHFFDAMKKKNL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+GC+L +  +D+ +   +   P      +++L     GY+ L+ L S   L    K+
Sbjct: 62   KPILGCELYVCKEDDHR--REFANPDSKYNHMLVLAENEAGYRNLVRLTSEAALHGFYKK 119

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              R+  ++L +   EGLI  +G  +G + +       + A+K    ++ +FG    ++ +
Sbjct: 120  P-RVSKNFLAK-HVEGLIGFSGCLAGEVSQHLMEGDYEKAKKAAGDYETMFGRGNFFLEI 177

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    D+     + +L    ++PL+ATN+S ++ ++D  AH+VL+ V   T  S  D 
Sbjct: 178  QDHGLEPDKAVTEAMFRLEKDLDIPLIATNDSHYIEDQDSRAHEVLLCV--QTAGSMNDP 235

Query: 246  PRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R    T + Y+K+  EM  +FS  PE    T++   RC   L+      P+F   E +D
Sbjct: 236  KRFKFDTQEFYIKSADEMHRLFSHAPEVCTRTMQFPERCQLELKAVKNPFPKFDVPEGED 295

Query: 303  IQKEEEN-------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +    E          R  AV  LE R   G + K     DY  RL+ E++ I +MKF G
Sbjct: 296  LDSYFEQVCRAGWRHRRETAVKHLEDR---GILRKSI--ADYEARLNREIDCIKQMKFPG 350

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YF+IV DFI++AK+ +IPVGPGRGS AGS+ AY + ITD+DPL+  LLFERFLNP+R+SM
Sbjct: 351  YFMIVWDFIRYAKQQSIPVGPGRGSAAGSLVAYVMEITDVDPLQNDLLFERFLNPERVSM 410

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD DIDFC +RR EVI+YV+ KYG ++VAQIITF ++ AKAA++DVGRAL MPY +VDR+
Sbjct: 411  PDVDIDFCMNRRGEVIKYVREKYGEDQVAQIITFNTMAAKAAIKDVGRALDMPYGEVDRI 470

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KLIP      +  QA+ D     +A   DP +  L++ + +LEGL R A  HAAG+VI 
Sbjct: 471  AKLIPATIGITIE-QALKDSPPLAQA-YEDPKIRELIDTALRLEGLVRGAGVHAAGVVIA 528

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGV 594
             +PL++LVP+ R  + D  VT ++MK +EK GL+K DFLGL TLT++   L  + + RGV
Sbjct: 529  PQPLTELVPVTR-TKDDAIVTSYDMKAVEKMGLLKMDFLGLTTLTVIDDCLKLIKSNRGV 587

Query: 595  KVDLSLIPFDDHETYHLLTTKG-TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             VD++ IP DD ETY  +  +  T G+FQ ES GMR  L   +P  +ED+ AL +LYRPG
Sbjct: 588  DVDMATIPLDDAETYEKVYHRALTSGVFQFESGGMRDVLRRYKPTTVEDLTALNALYRPG 647

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PI   ++  +  RK G+  +  + P ++P+LKET GVI+YQEQVMQI+  ++GYSL  AD
Sbjct: 648  PIQGGMIDDFIERKWGRRAVEYLFPELEPILKETLGVIVYQEQVMQISSAIAGYSLGGAD 707

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F++GA++    K  A  +F+L+ +FA YGFNKSH+AAYA+
Sbjct: 708  LLRRAMGKKNAEEMAKQRVLFMAGAAERKFHKDRAGQLFDLMEQFAGYGFNKSHSAAYAL 767

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++Y TAW+KTHYPVEF+AA +T E    E + K+  + R+ NI ++PP V     +F   
Sbjct: 768  LAYHTAWLKTHYPVEFMAALLTSETSKPENVVKYIGECREINIPVVPPDVQISAANFTPA 827

Query: 832  DNRIYYSLAAIKGVGTTT------ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             + I + LAAIK VG         AR  ++A+  + F SL +FC +VD + +N+RVLESL
Sbjct: 828  GDSIRFGLAAIKNVGHNAIDSIIKAREELQAAGKQGFVSLWEFCDKVDLRLMNKRVLESL 887

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--------- 936
              AGALD FG  R ++  +LD   + AQ  +++       +F    G F D         
Sbjct: 888  CKAGALDAFG-PRARVFAALDKAMERAQKSQRDAAAGQSGLF----GMFDDPGPSSASTG 942

Query: 937  -KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI--------------- 980
             + TL      +   R +NE+ VLGF+ SGHP+D Y+  LR M +               
Sbjct: 943  GEETLPPAPDWDEHTRLQNEKDVLGFFVSGHPMDKYREKLRNMKVVDTATACEMKPEPQV 1002

Query: 981  --KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
              +G  E     +GN I++A ++   +  K+++   +
Sbjct: 1003 FRRGQAE-----QGNEIQIAGVITGLKVAKSKRSGEM 1034


>gi|330837734|ref|YP_004412375.1| DNA polymerase III, alpha subunit [Spirochaeta coccoides DSM 17374]
 gi|329749637|gb|AEC02993.1| DNA polymerase III, alpha subunit [Spirochaeta coccoides DSM 17374]
          Length = 1170

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/1030 (38%), Positives = 612/1030 (59%), Gaps = 27/1030 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YSLL+GA S+   + K       A+AITD  N+F A +F +   AA I+P
Sbjct: 3    GFVHLHNHTDYSLLDGAGSIPKYIAKAKELGMNALAITDHGNMFGAHKFYKACKAADIKP 62

Query: 70   IIGCQLDIDMQDN-LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIGC+  +  + + L+   +GK   P    ++LL    +GY  L+EL S  Y+  +G   
Sbjct: 63   IIGCEFYVAPESHTLREGVEGK---PRAYHLILLAMNEKGYHNLMELNSISYV--EGFYY 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
                   L E   EG++ L+    G I      N  + A+K  L    +F G R Y+ +Q
Sbjct: 118  KPRIDHELIEQHNEGVLCLSACLGGEIASLLKDNRYEDAKKAALWHASVFDGGRYYLEIQ 177

Query: 188  RHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++   +Q + +L+    +PLVATN+  ++++ D  AHD+L+ +      ++ DR 
Sbjct: 178  DHGLPEQKTVNQALARLSTETGIPLVATNDIHYINKSDANAHDILLCIGMGKKKNEADRM 237

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQ 304
            R  + ++Y+K+  EM   F   P+A+ENTV+IA  C+  +    P LPRF + K   D  
Sbjct: 238  RFHSAEYYMKSAEEMEKQFLWCPQAVENTVKIADLCNLEIHFPGPRLPRFRVPKGFTD-- 295

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               ++ LR+ +  GL  R A+          D  +RLD+EL+VI +M F GYFLIV D+I
Sbjct: 296  ---DSYLRHLSHEGLARRYAEVT-------PDLEKRLDYELDVIIQMGFQGYFLIVRDYI 345

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAK+ +IPVGPGRGSGAGS+ AY   ITD+DP++++LLFERFLNP+R +MPDFDIDFC 
Sbjct: 346  YWAKQRDIPVGPGRGSGAGSLVAYCTEITDVDPIKYNLLFERFLNPERKTMPDFDIDFCF 405

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + R EVI YV   YG + VAQI TFG+L+AKA ++DV R L +P+ + +R+ K+IP+DP 
Sbjct: 406  EHRQEVIEYVTEHYGEDHVAQIATFGTLKAKAVVKDVARVLDIPFEESNRIAKMIPDDPK 465

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+      ++   A      L + + +LEGL RH STHAAG+VIG++ L   VP
Sbjct: 466  MTLK-KALEQSPELKQVADAGGIYGELFDAAFRLEGLNRHTSTHAAGVVIGEKKLLTYVP 524

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +YRD ++    TQF M  +E+ GL+K D LGLKTLTL++ ++D + +      +  I  +
Sbjct: 525  LYRDAKTGAISTQFTMDQLEENGLVKMDLLGLKTLTLIKHTVDLVHKTNPGFSIEDINEE 584

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ +L    +  +FQ ES+GM++ L    P+ IED++AL +LYRPGP+D I  +   
Sbjct: 585  DEKTFDMLRRGDSACVFQFESTGMQKILRDALPNSIEDLVALNALYRPGPMDYIPQFVES 644

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            KNG+  I   HP ++  LK T GVI+YQEQVM++AQ++ GY+L  AD+LRR M KK  EE
Sbjct: 645  KNGRMPITYAHPDLEETLKTTYGVIVYQEQVMKVAQIIGGYTLGAADILRRIMSKKKAEE 704

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +  Q+ +F+ GA   G  + +A  IF++L  FA YGFNKSHA AY+VI+YQTA++K +YP
Sbjct: 705  LAAQEVKFVEGALAKGYQEKLARYIFKMLEPFAGYGFNKSHAVAYSVIAYQTAFLKANYP 764

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF+AA++T E++N +K  ++ ++A+   I+++PPS+N     F   + +I Y LA IK 
Sbjct: 765  AEFMAANLTNEINNPDKFSEYLREAKHMGIEVLPPSINYSERQFNAVEGKIVYGLAGIKN 824

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG   A  I+ E +   P++S  DF  RVDS+ +N ++LESL+ AG  D    +R  L++
Sbjct: 825  VGEGVADLIIRERNEHGPYESFIDFLVRVDSRAMNSKLLESLIKAGTFDSMEENRPTLIE 884

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            +++    YAQ  ++++ +   ++F   +G   D  T+ +        + E E+ +LGFY 
Sbjct: 885  NMEAAVIYAQKQKESKESGQSSLF---EGDDIDSFTMTRHPDWEMREKLEIEKALLGFYI 941

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            SGHPLD+Y+   ++  +  +       R   I L AM+   +   T+K + +G++   + 
Sbjct: 942  SGHPLDLYRDAWKRSVLVDFSRPERFPRNRQISLVAMITDIRTLMTKKQTMMGFLELVDF 1001

Query: 1024 AKEYEANFFP 1033
            +   EA  FP
Sbjct: 1002 SGTLEATCFP 1011


>gi|203284485|ref|YP_002222225.1| DNA polymerase III, subunit alpha [Borrelia duttonii Ly]
 gi|201083928|gb|ACH93519.1| DNA polymerase III, subunit alpha [Borrelia duttonii Ly]
          Length = 1144

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/973 (41%), Positives = 591/973 (60%), Gaps = 35/973 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL VHS +SLL+GA  + +I+ K        IA+TD  NLF A++F ++A  AGI+PI
Sbjct: 7   FVHLHVHSDFSLLDGAAKIVDIVSKAKEYNMSHIALTDHGNLFGAIKFYREAKKAGIKPI 66

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G  ++  M + LK   +          ++LL    +GY+ L++L S  YL +      R
Sbjct: 67  VG--IEAYMSNTLKHIKKNDEFGKPYYHLILLAKNEQGYKNLLKLTSVSYL-EGFYYRPR 123

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           +    L +  +EGLI ++    G I +    N    A+  +L FK  FGD  Y+ LQRH 
Sbjct: 124 MDRDDLAKY-SEGLICMSACIGGIIPQLILSNRFDDAKNEILWFKNTFGDDFYLELQRHG 182

Query: 191 GYDRYRESQVVQ---LAYTHELP--LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                ++  +V    +AY+ EL   L  +N+S ++++ED  A D+++ +      S   R
Sbjct: 183 ----IKQQDIVNEKLIAYSKELDVQLSVSNDSHYVNKEDATAQDIIVCIGTGAKRSDSGR 238

Query: 246 PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRFIEKECDDI 303
            ++  D  YLK+  EM  +F DLPEAL NT++IA +C+ F ++   PI P +   E  D 
Sbjct: 239 FKMETDEFYLKSPEEMCELFKDLPEALANTLKIAEKCNDFEIKFPGPIFPEYHIPEEFDT 298

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
           Q +    L +  + GL+ R A           + ++R  +EL+ I  M F  YFLIV DF
Sbjct: 299 QGQY---LEHLTLEGLKFRYAN-------ITDNIKERAFYELSTIINMGFEAYFLIVWDF 348

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           I++A  N+IPVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFC
Sbjct: 349 IKFAHDNDIPVGPGRGSGAGSIVAYALRITDVDPLKYNLLFERFLNPERVSMPDFDIDFC 408

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RDEVI+YV  KYG ++VAQIITFG+L+ KA  +DVGR L +P+ Q + + KLIP+ P
Sbjct: 409 FEGRDEVIKYVTKKYGEDKVAQIITFGTLKPKAVFKDVGRVLDIPFVQSNEITKLIPDGP 468

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              VSL+ +  D   +E     P  + L+E +  LEG+ RHASTHAAGIVI    L+  V
Sbjct: 469 K--VSLREVLKDKALKEYLNKGPVYNELMEAALVLEGMNRHASTHAAGIVIARTSLTDYV 526

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
           P+Y+D + D   TQ+ M  +E  GL+K DFLGLKTLTL++ +   +        ++ I  
Sbjct: 527 PLYKDYKQDTVSTQYTMDLLEDCGLVKMDFLGLKTLTLIKNAEKLIKITDPDFSIATISD 586

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            D +T+ +L+   +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  +  
Sbjct: 587 SDAKTFKMLSEGRSTSVFQFESEGMQQILKDSKPDNIEDLIALNALYRPGPMQFIPQFVA 646

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            K G ++I   HP +  +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK ++
Sbjct: 647 AKTGAKRIKYPHPDLTEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKKED 706

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           EM++ K  FI GA + G  +T+A +IFELL  FA YGFNKSHAAAY++I+YQTA++K +Y
Sbjct: 707 EMNRMKVDFIKGALEKGYDETLASDIFELLKPFAGYGFNKSHAAAYSLIAYQTAYLKANY 766

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
           P  F+AA++T E++N EK+  + ++ +   I ++ P +N    DF+V  + I Y L  IK
Sbjct: 767 PASFMAANLTNEINNTEKLSYYIEETKSMGINVLRPDINQSFKDFRVVGSDISYGLNGIK 826

Query: 844 GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            +G      I+ E   +  + S EDF  RVD K +N++ LE+ + +G  D  G +R  L+
Sbjct: 827 NIGELMVDLILNERQENGEYKSFEDFIKRVDEKVINKKFLEASIKSGLFDSLGQNRRTLI 886

Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHE---KGTFSDKITLEKFSVENSSVRFENEQRVL 959
           ++LD +  +    +  +     ++FA +   + TF+  +  E   +E   + FE E  +L
Sbjct: 887 ENLDKLIAFVLENKNAKKQGQNSLFASQNILEETFNYNLFEEYSYLE--LLGFEKE--LL 942

Query: 960 GFYFSGHPLDVYK 972
           GFY SGHPLD YK
Sbjct: 943 GFYVSGHPLDPYK 955


>gi|134093726|ref|YP_001098801.1| DNA polymerase III subunit alpha [Herminiimonas arsenicoxydans]
 gi|133737629|emb|CAL60672.1| DNA polymerase III, alpha subunit [Herminiimonas arsenicoxydans]
          Length = 1153

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/992 (40%), Positives = 593/992 (59%), Gaps = 41/992 (4%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SP F+HL++HS YS+++G + +++++   AAD QP++AITD  NLF  ++F ++A + GI
Sbjct: 3   SPQFIHLRLHSEYSIVDGLVRIDDVIAAAAADAQPSLAITDLANLFGMVKFYKEARSKGI 62

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           +PI+GC        ++ ++N      P+   ++LLV    GY +L EL+S+ +L +  + 
Sbjct: 63  KPIVGC--------DVWISNDNDRDKPS--RLLLLVKNKTGYLQLCELLSKAWLTNLHRG 112

Query: 128 SVRICLSWLQEIGTEG----LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
              I   WL+++  EG    LI+L+G   G I  A    +   AE+    +  +F    Y
Sbjct: 113 RAEIRPEWLEQLAAEGKPNGLIVLSGAHFGDIGMAIDNGNLAAAERHAKRWADMFPGHFY 172

Query: 184 VNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
           + +QR    +     R++ V  LA    LPLVAT+   FL + ++ AH+    ++   ++
Sbjct: 173 IEVQRAEQPNMDAHVRQASV--LAAKLNLPLVATHPVQFLDQNEFTAHEARTCISEGEIL 230

Query: 241 SQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
           +   R  R         ++EM  +F+D+P AL+N+VEIA+RC+ +L++  P LP F   +
Sbjct: 231 ANPRRIKRFNERQRFTTQAEMAELFADMPNALQNSVEIAKRCNLMLELGKPKLPNFPTPD 290

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              I    +  L  +A  GLE RL         +  + + Y+ RL FE + I  M F GY
Sbjct: 291 GSSI----DEFLVKEAQRGLEGRLQHLYPDPEQREKNRERYQARLKFETDTIIHMGFPGY 346

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
           FLIVADFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMP
Sbjct: 347 FLIVADFIKWAKNNGVPVGPGRGSGAGSLVAYSLLITDLDPLQYNLLFERFLNPERVSMP 406

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           DFDIDFCQ+ RD VI+YV+++YG + V+QI TFG++ AK A+RDVGR L   Y+  D + 
Sbjct: 407 DFDIDFCQEGRDRVIQYVKDQYGKDAVSQIATFGTMAAKGAVRDVGRVLDFGYNFCDGIS 466

Query: 477 KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
           KLIP  P   V++  AI ++    E    +  V +LLE++QK+EG+ R+   HA G++I 
Sbjct: 467 KLIPFKPGKLVTIADAIKEEPLLAERLENEEEVKQLLELAQKVEGIARNIGMHAGGVLIA 526

Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
              L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L +++ ++      
Sbjct: 527 PGKLTDFCPLYTQGGDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIKDLDPA 586

Query: 595 KVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             D SL  +P +D  +Y LLT   T+ +FQLES GM+  L+  +PD  EDIIALV+LYRP
Sbjct: 587 MADFSLEKLPLNDRPSYDLLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRP 646

Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           GP+D I  +  RK+G E+     P  + +L ET G+++YQEQVMQ+AQ++ GYSL  AD+
Sbjct: 647 GPMDLIPDFCRRKHG-ERFEYPDPRTEAILSETYGIMVYQEQVMQMAQVIGGYSLGGADL 705

Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           LRRAMGKK  EEM + +E F +GA+KN +S   A  IF+L+ KFA YGFNKSHAAAYA++
Sbjct: 706 LRRAMGKKKAEEMAQHRELFRAGAAKNDLSAEKADEIFDLMEKFAGYGFNKSHAAAYALL 765

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVN------TPC 825
           SY TA++K H+P  F+AA+++L MD+ +KIK   +D      + ++PP +N      TP 
Sbjct: 766 SYHTAYLKAHHPAAFMAANLSLAMDDTDKIKILVEDTLDVCGLTLLPPDINQSDYRFTPV 825

Query: 826 VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                   +I Y L A+KG G      I+ A   KPF  L DFC RVD +++NRR ++SL
Sbjct: 826 GVPGKKATQIRYGLGAVKGSGKGAIDAIVNARQGKPFVDLFDFCKRVDKRQINRRTIDSL 885

Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
           + AGA DCF   R  LL S+    + A+  E   +    ++F  +           K S 
Sbjct: 886 IRAGAFDCFNIDRAVLLASVGFAMECAEQAEA--SANQVSLFGGDDSDMETPPEYVKASP 943

Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
            +   +   E+  LGFY SGH  D Y   +R+
Sbjct: 944 WSDKQKLTEEKAALGFYLSGHLFDAYAEEVRR 975


>gi|171913486|ref|ZP_02928956.1| DNA polymerase III, alpha subunit [Verrucomicrobium spinosum DSM
            4136]
          Length = 1155

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/1037 (39%), Positives = 620/1037 (59%), Gaps = 43/1037 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL +H+ YS+L+GA+ + +++ K  +   PA+A+TD  NLF A+EF Q+A  AGI
Sbjct: 2    SASFVHLHLHTEYSMLDGAVRIPDLMKKAKSLGMPAVAMTDHGNLFGAIEFYQEANKAGI 61

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +PIIGC++ +    M +   +T + ++       + LL +  EGY  L++LV+  +L D 
Sbjct: 62   KPIIGCEIYLAPGSMWEKKDVTGRKRSS-----HLTLLAANNEGYANLVKLVTLAHL-DG 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 R+    L++  +EGLI L+G  SG I+     +    A K +  F  +FG D  Y
Sbjct: 116  MYHKPRVDKEALKK-HSEGLICLSGCISGEINEFILTDREDEARKTVQEFIDIFGKDNFY 174

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHE--LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + L  H G  + +   +    ++ E  L +VA N+  FL++ED+EAHDV++ +  +  V 
Sbjct: 175  LELHNH-GMAQQQRCMLKLREFSREFGLKMVAANDVHFLNKEDHEAHDVMICIGTAANVH 233

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             + R   +P+ Y K   +M  +F D  EA + T+EIA +C+  L++ A  + ++ +    
Sbjct: 234  DEKRLHYSPEVYFKTAEQMRELFEDFEEACDTTLEIAEKCNIKLKLDASSIEKYPQFPPP 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            + Q  E    R     G+  R  +    +  +    R+RLD+EL +I +M F+ YFLIV 
Sbjct: 294  EGQTRE-GYFRQLCEDGMIFRYGK---ERAMNDAMLRERLDYELGIINKMNFTSYFLIVW 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WA+ + IPVGPGRGS AGS+ AY+L ITD+ P+RF L+FERFLNP+R+S PD DID
Sbjct: 350  DFIKWARDHGIPVGPGRGSAAGSLVAYSLGITDLCPIRFGLIFERFLNPERVSPPDVDID 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ RR EVI YV+  YG   V+ IITFG++ AK+ +RDVGR L   Y   DRL K+IP 
Sbjct: 410  FCQTRRPEVIEYVRQHYGERSVSHIITFGTMGAKSVVRDVGRVLGWSYGDADRLSKMIPT 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +    + L+ A+  +   + A   + S  +L + +  LEG+ R+A  HAAGIVIGD+PL 
Sbjct: 470  ELN--IDLESAVEKNPELKAALENESSTQQLWQYATFLEGMTRNAGIHAAGIVIGDQPLD 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              +P+ R    ++ V QF M  +   G++K DFLGLKTLT+++ ++DF+  R    +L  
Sbjct: 528  NFIPLTRGSEGEV-VAQFAMGPLTDVGMLKMDFLGLKTLTVIKDAVDFVRLRFPDFNLDA 586

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L    T+ +FQ+ES GM      ++PD IE+IIAL++LYRPGP+D I  
Sbjct: 587  VPLDDKTTYEMLRKGETIAVFQMESGGMALTCRQLEPDKIEEIIALLALYRPGPMDLIPD 646

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RK G++++  +HPL++ + KET G++IYQEQV + A LL+GYSL  AD+LRRAMGKK
Sbjct: 647  FIKRKKGEQRVEYLHPLLEDVSKETYGILIYQEQVQKAANLLAGYSLGAADLLRRAMGKK 706

Query: 721  IKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
              EEM+KQ+  F+ G  + N I    A +IF+LL KFA YGFNKSH+AAY +++Y+TA++
Sbjct: 707  KPEEMEKQRTIFVKGCGETNQIPAKKANDIFDLLEKFAGYGFNKSHSAAYGIVTYRTAYL 766

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP-------CVDFKVGD 832
            K +YPVEF+AA ++ E+++ +K+  F  + ++  I I+PP VN         C++     
Sbjct: 767  KANYPVEFMAAVLSYEVNSTDKLAGFVSECQRMGITILPPDVNKSSLKFAPECIEGSDVP 826

Query: 833  NRIYYSLAAIKGVG-TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            N I Y LAA+K VG    A  I E + + PF SLEDFC+RVDS+ +N+R++E L+  G  
Sbjct: 827  NAIRYGLAAVKNVGEAAMAAAIAERTKNGPFTSLEDFCARVDSRMINKRLMEPLIKVGGF 886

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-----VE 946
            D  G  R  +   LD +   A   +K R     ++F  +    + K TL K +      +
Sbjct: 887  DWTGQDRAGMCFVLDEVLSNASSRQKERKAGMVSLFDDDT-MGATKNTLAKSAGPPPWKK 945

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN--NIRLAAMVVSK 1004
               + FE E  +LGF+ SGHPLD Y+ I     I    + V  ++    ++R+A ++   
Sbjct: 946  EELMAFEKE--LLGFFVSGHPLDNYRHIYESKYITRIAD-VQEVKEERVSLRVAGLIQRL 1002

Query: 1005 QQKKTRKGSRIGWVTFS 1021
            + K T+K +R  + TF+
Sbjct: 1003 EVKYTKKDNR-AFATFA 1018


>gi|197123916|ref|YP_002135867.1| DNA polymerase III subunit alpha [Anaeromyxobacter sp. K]
 gi|196173765|gb|ACG74738.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. K]
          Length = 1210

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1080 (38%), Positives = 628/1080 (58%), Gaps = 84/1080 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL +H+ YSLL+GA+ + ++L  + A    ++A+TD  NLF A++F +KA  AG++
Sbjct: 2    PDFVHLHLHTLYSLLDGAIRIKDLLKTVKAKGMSSVAVTDHGNLFGAVDFYKKAKEAGVK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            PI+G +  +         ++G+T         ++LL   AEG+  L  L S+ +  +   
Sbjct: 62   PILGMEAYV-------AGDKGRTDRSERIGRHLILLAKNAEGWANLRYLSSKAFT-EGFY 113

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               RI    L++  ++GL+ LT   +G + R         A +    ++ +F     ++ 
Sbjct: 114  YDPRIDKQLLRD-HSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLE 172

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q +   ++    +++ QL     +PLV T ++ ++S ++ +AH+VLM +A +       
Sbjct: 173  VQSNGMREQLDVNAKLAQLGRDEGIPLVGTADAHYVSRQEAKAHEVLMCIASNKTFQDPK 232

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R   D  ++    EM +   D  EAL+NT+ IA  C+  L +    LP F   E    
Sbjct: 233  RLRHDTDGLFVAGPDEMAAALPDFREALDNTLRIAEMCNVELPLGKTFLPSFTLPEG--- 289

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVAD 362
               E++ +   A  GL+ R  +    K  H +D YRQRL+ EL VI +M F GYFLIV D
Sbjct: 290  -MSEDDYIDKLAREGLDRRFRE-IDGKYPHDRDVYRQRLEMELGVIKKMGFPGYFLIVQD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK+++IPVGPGRGSGAGS+ A++L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 348  FINWAKEHHIPVGPGRGSGAGSIVAWSLRITDLDPLRWHLLFERFLNPERVSMPDFDVDF 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ+RRDEVI+YV+ KYG + V QIITFGSL+A++ +RDV R + +P+++ DR+ KL+P D
Sbjct: 408  CQNRRDEVIQYVRGKYGQDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDRIAKLVP-D 466

Query: 483  PAH----PVSLQAIADDSRFREARLAD----PSV------DR----------LLEISQKL 518
            P      P+       D    E RL +    P+V      D+          LL+I+  L
Sbjct: 467  PVQGKTPPLKELVFGSDKMPAEPRLKELHDKPAVISQWVDDKGVQNKVTTKDLLDIAMSL 526

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R A  HAAG+VI D+PL + VP Y+D +S++ V+QF  + +E AGL+KFDFLGLKT
Sbjct: 527  EGLNRQAGLHAAGVVIADKPLWEYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKT 586

Query: 579  LTLLQKSLDFLAQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            LT++  +L  + +   ++     S IP DD   Y L++   T G+FQ+ESSG  + +  M
Sbjct: 587  LTVIDDALRMVKRNHPEMKDFAASDIPIDDPAVYELISRGDTGGVFQMESSGFTEMVVKM 646

Query: 636  QPDCIEDIIALVSLYRPGPIDN--------IVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            +P   ED+IA  +LYRPGP+D         + VY +RK+G+EK+   H  ++ +L+ T G
Sbjct: 647  KPSRFEDVIAAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVQYPHQSLEKVLEPTYG 706

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            VI+YQEQVMQI+Q+L+GYSL +AD+LRRAMGKK  E M K++  F++GA  NG+ + +A 
Sbjct: 707  VIVYQEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVANGVDEKVAG 766

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             IF+L+ KFA YGFNKSH+AAY +++ QTAW+K HYPVEF+AA ++ E  N +K+     
Sbjct: 767  GIFDLMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHIS 826

Query: 808  DARQFNIQIMPPSVNTPCVDF----------KVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
            +AR   ++++PP VN     F          K    RI + L A++GVG +  + I+EA 
Sbjct: 827  EARASQLEVLPPDVNESDAAFGAFPPGPESPKGSRGRIRFGLGAVRGVGESAVQAIVEAR 886

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
            A  PF SL D   RVDSKK+N++VLE+LV +GALD  G  R QL   +D         + 
Sbjct: 887  ASGPFKSLFDLAGRVDSKKINKKVLEALVKSGALDFEGVPRWQLYFGIDAAISAGASAQA 946

Query: 918  NRTNKHENIFAH--------------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            +R +   ++F                  G    ++T+E++      VR   E+  LGFY 
Sbjct: 947  DRASGQASLFGALAASAATEAKPRYPRPGDAVGEVTVEEWP---ERVRLAFEKEALGFYL 1003

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSE 1022
            +GHPL  Y+  +R+              G+ + +  +V S +++  + KG+R G++T  +
Sbjct: 1004 TGHPLMGYEREVRRYASSTCAAVAQKRHGDKVTVVGVVASLRERMNKEKGTRFGFLTLED 1063


>gi|187918442|ref|YP_001884005.1| DNA polymerase III subunit alpha [Borrelia hermsii DAH]
 gi|119861290|gb|AAX17085.1| DNA polymerase III alpha subunit [Borrelia hermsii DAH]
          Length = 1147

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/1031 (39%), Positives = 613/1031 (59%), Gaps = 66/1031 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+GA  + +I+ K        IA+TD  NLF A+ F ++A   GI+PI
Sbjct: 7    FVHLHVHSDYSLLDGAAKITDIVAKAKKCNMSHIALTDHGNLFGAVRFYREAKRVGIKPI 66

Query: 71   IGCQLDID-MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-------- 121
            IG +  +  +  ++K  ++   P+     ++LL     GY+ L++L S  YL        
Sbjct: 67   IGIEAYMSSISKHIKKNDEFGKPYY---HLILLAKNELGYKNLLKLTSISYLEGFYYRPR 123

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
            +D+G            E  +EGLI  +    G I +    N    A+  +L FK +FGD 
Sbjct: 124  MDKGDI----------EKYSEGLICTSACIGGIIPQLILANRFDDAKNEILWFKSIFGDD 173

Query: 182  LYVNLQRHRGYDRYRESQVVQ---LAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAH 236
             Y+ LQRH      ++  +V    ++Y+ EL  PL  +N+S +++  D  A D+++ +  
Sbjct: 174  FYLELQRHG----IKQQDIVNEKLISYSRELNVPLTVSNDSHYVNRGDATAQDIIVCIGT 229

Query: 237  STVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPR 294
                S  +R ++  D  Y+K++ EM  +F DLPEAL NT++IA +C+ F ++   PI P 
Sbjct: 230  GAKRSDPNRLKMETDEFYIKSQEEMCELFRDLPEALANTLKIAEKCNDFEIKFPGPIFPE 289

Query: 295  F-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            + +  E D + +     L    + GL+ R A             ++R  +EL+ I +M F
Sbjct: 290  YQVPSEFDTLGQY----LEYLTLEGLKFRYAS-------ITDSIKERAFYELSTIIKMGF 338

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFLIV DFI++A  N IPVGPGRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+
Sbjct: 339  EAYFLIVWDFIKFAHDNGIPVGPGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERV 398

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPDFDIDFC + RDEVI+YV  KYG ++VAQIITFG+L+ KA  +DVGR L +P+++ +
Sbjct: 399  SMPDFDIDFCFEGRDEVIKYVTRKYGEDKVAQIITFGTLKPKAVFKDVGRVLDIPFAESN 458

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
             L KLIP+ P   VSL+ + +D   +E        + L+E +  LEG+ RH STHAAGIV
Sbjct: 459  ELTKLIPDGPK--VSLREVFEDGSLKEYLNKGAVYNELMEAALVLEGMNRHVSTHAAGIV 516

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            I   PL+  VP+Y+D + D   TQ+ M  +E  GL+K DFLGLKTLTL++ + + +    
Sbjct: 517  IARTPLTDYVPLYKDYKQDTVSTQYTMDLLEDCGLVKMDFLGLKTLTLIKNAENLIKITN 576

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                ++ I   D +T+ +L+   +  +FQ ES GM+Q L   +PD IED+IAL +LYRPG
Sbjct: 577  PDFSIANISDSDAKTFKMLSEGRSASVFQFESEGMQQVLREAKPDSIEDLIALNALYRPG 636

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+  I  +   K G ++I   HP +  +L+ T GVI+YQEQVM++A++++G+SL +AD+L
Sbjct: 637  PMQFIPQFIAAKTGTKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIAGFSLGKADIL 696

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK ++EM+K K  FI GA   G  +T+A +IFELL  FA YGFNKSHAAAY++I+
Sbjct: 697  RRAMGKKKEDEMNKMKVDFIKGALSKGYDETLANDIFELLKPFAGYGFNKSHAAAYSLIA 756

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K +YP  F+AA++T E++N EK+  +  +A+   I ++ P +N    +F++  +
Sbjct: 757  YQTAYLKANYPENFMAANLTNEINNTEKLSYYIDEAKSMGIDVLKPDINQSFKEFRIVGH 816

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L  IK +G      I+ E   +  + S EDF  RVD K +N++ LE+ + +G  D
Sbjct: 817  NISYGLNGIKNIGGLIVDLIIAERQENGEYKSFEDFIRRVDDKVINKKFLEAAIKSGLFD 876

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNK---HENIFAHEKGTFSDKITLEKFS---VE 946
              G +R  L ++LD   K   +V K++ +K     ++F+  +   S  + +E FS    E
Sbjct: 877  SLGQNRKTLFENLD---KLIAFVAKDKNDKKLGQNSLFSSLE---SQDVIVESFSYHVFE 930

Query: 947  NSS----VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
              S    ++FE +  +LGFY SGHPLD YK  L++       E +A  +   ++ A  + 
Sbjct: 931  EYSYPELLKFEKD--LLGFYVSGHPLDPYKSELKRFTNFNILEDLAVRKNTIVKFAGSLS 988

Query: 1003 SKQQKKTRKGS 1013
            + +   T+K +
Sbjct: 989  TVKVIHTKKNN 999


>gi|328950095|ref|YP_004367430.1| DNA polymerase III, alpha subunit [Marinithermus hydrothermalis DSM
            14884]
 gi|328450419|gb|AEB11320.1| DNA polymerase III, alpha subunit [Marinithermus hydrothermalis DSM
            14884]
          Length = 1224

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1094 (39%), Positives = 624/1094 (57%), Gaps = 87/1094 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            F HL  H+ YSLL+GA  L ++++  K     +PA+A+TD  NL  A++F +KA AAG++
Sbjct: 3    FAHLHQHTQYSLLDGAAKLQDLIEWVKQVTPDEPALAMTDHGNLHGAVDFYKKATAAGVK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG +  +  +        GK        + +L     GYQ L  L SR YL +     
Sbjct: 63   PIIGYEAYVAAESRFD-RKMGKGLDGGYFHLTILAENFTGYQNLCRLASRAYL-EGFYMK 120

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L+E   EGLI+L+G     I +    +   +AE RL  + ++FGDR ++ +Q 
Sbjct: 121  PRIDRELLRE-HNEGLIVLSGCLGAEIPQFILQDRLDLAEDRLKEYLEIFGDRYFIEIQD 179

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D+   + + + A  + + +VATN+  ++ +ED EAH VL+A+   +     +R R
Sbjct: 180  HGLPEDKKVNAVLKEFARKYGIGMVATNDGHYVKKEDAEAHAVLLAIQSKSTWDDPNRWR 239

Query: 248  VTPDHYLKNRSEMVSIFSDLP------EALENTVEIARRCSFILQVHAPI---LPRF--- 295
               D +     E  ++ + LP      E  +NT+EIARRC+  L V   +   +PR+   
Sbjct: 240  FPCDEFYVKSPE--AMRAALPAEEWGDEIFDNTMEIARRCNVELPVGDKMVYRIPRYPLP 297

Query: 296  -----------------IEKECDDIQKEE--------------------------ENELR 312
                             +E+  D + +                              ELR
Sbjct: 298  EGRDENQYLRELTFRGLLERYPDRVTEALYREFLKKLGRTPHGDAQALAAEIALLPKELR 357

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             KA A L  +L +G    G+       R ++EL+VI +M F GYFLIV D+I WAK   I
Sbjct: 358  EKAQAFLP-KLEEGLEWDGWAIL---ARAEYELSVIEQMGFPGYFLIVQDYINWAKNQGI 413

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS+ AYA+ IT+IDPL F+LLFERFLNP R++MPD D DF   RRDEVI+
Sbjct: 414  SVGPGRGSAAGSLVAYAIRITNIDPLEFNLLFERFLNPARVTMPDIDTDFSDVRRDEVIQ 473

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YV+ +YG ++VAQI TFG++ +KAAL+DV R   MP+ + + L KLIP     P+ L   
Sbjct: 474  YVRERYGEDKVAQIATFGTMASKAALKDVARVFGMPHKRAEELAKLIPVQFGKPMPLAKA 533

Query: 493  ADD-SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
            A+     R+A   D  V R+ E++++LEGL RHAS HAAG+VI   PL+ LVP+ RD   
Sbjct: 534  AETIPEIRQAMEQDEQVRRVFEVARRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRDTSG 593

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYH 610
               VTQ++M  +E  GL+K DFLGL+TL+ L+++   + + +GV++D   IP DD +T+ 
Sbjct: 594  TGVVTQYDMGSVEALGLLKMDFLGLRTLSFLEEAKRIIRESKGVELDYDRIPLDDAKTFE 653

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL    T GIFQLESSGM   + G++P  I+DIIALVSLYRPGP+++I  Y  R +G+E 
Sbjct: 654  LLGRGETKGIFQLESSGMSSTVRGLKPRRIQDIIALVSLYRPGPMEHIPTYIRRHHGREP 713

Query: 671  IVSIH-----PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +           ++P+L+ET G+ +YQEQ+MQIA  ++GYSL EAD+LRRAMGKK  EEM
Sbjct: 714  VTYAEFPHAAKYLEPILRETYGIPVYQEQIMQIASAVAGYSLGEADLLRRAMGKKKVEEM 773

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             K + RF+ GA++ GI +  A  +F++L  FA+YGFNKSHAAAY+++SYQTA++K +YPV
Sbjct: 774  QKHRVRFVKGAAERGIPEDEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKANYPV 833

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+AA +T+E  N +K+ ++ +DAR   I ++PP +N    DF+V    I + L+A+K V
Sbjct: 834  EFMAALLTVERRNSDKVAEYIRDARAMGIAVLPPDINRSGFDFRVVGQEILFGLSAVKNV 893

Query: 846  GTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            G    RHI+E      PF SL DF  RVD  ++NRR  ESL+ AGA D FG  R ++L +
Sbjct: 894  GEGAVRHILEERDRGGPFKSLADFLKRVDLHQVNRRAAESLIKAGAFDAFG-ERGRMLAA 952

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L+++ K+AQ  ++++      +FA    +    +       E + +R+E E   L  Y +
Sbjct: 953  LESLMKWAQAEKESQAAGMMGLFA--GASTEPPLPEVPPLDEVTKLRYEKE--ALSIYVT 1008

Query: 965  GHPLDVYKPILRKMGIKGYEE--SVATIRGNNIR----LAAMVVSKQQKKTRKGSRIGWV 1018
            GHPL  Y+  LR+      EE       +GN  R    LA MV S  +K T+ G  +   
Sbjct: 1009 GHPLLNYEG-LREAATCTIEELPRWYAEQGNGRRARALLAGMVESVVRKPTKSGGMMARF 1067

Query: 1019 TFSEPAKEYEANFF 1032
              ++     E   F
Sbjct: 1068 NLADETGAVEVVVF 1081


>gi|150391763|ref|YP_001321812.1| DNA polymerase III DnaE [Alkaliphilus metalliredigens QYMF]
 gi|149951625|gb|ABR50153.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens QYMF]
          Length = 1155

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/1057 (38%), Positives = 612/1057 (57%), Gaps = 56/1057 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+G  ++N  LD++      A+AITD  ++F  ++F + A   GI+P
Sbjct: 2    SFVHLHVHTQYSLLDGFATINQTLDRVKELGMDALAITDHGSMFGVVDFYKAAKKKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128
            IIGC++    +    MT++      +   +VLL     GYQ LI+LVS  YL   G    
Sbjct: 62   IIGCEVYTAARG---MTDKDPVKDKSQGHLVLLAKNNVGYQNLIKLVSESYL--HGFYYK 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187
             R+  + + +  TEGLI L+   +G + R    N  + A+++ L  +++FG    Y+ LQ
Sbjct: 117  PRVDYNEIAK-HTEGLIALSACLAGEVQRLILQNQYEKAKEKALMLEEMFGKGNFYLELQ 175

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H+  ++ +   +++++     +PLVATN+  +  +ED EAHD+L+ +    +++ + R 
Sbjct: 176  DHKLPEQQQVNEELIKMNQETGIPLVATNDVHYTDQEDAEAHDILLCIQTGKILNDEKRL 235

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ- 304
            +   D  YLK + EM  +F   PEAL NTV+IA  C          LP +      D+  
Sbjct: 236  KFPNDQFYLKTQKEMAKLFDYAPEALANTVKIAEMCQVDFDFDTIHLPNY------DVAP 289

Query: 305  -KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             K ++  LR     GL+ R  +         Q+ ++RL++EL +I +M +  YFLIV DF
Sbjct: 290  GKTKQGYLRELCYEGLQYRYKE-------ITQELKERLEYELGIIEQMGYMEYFLIVWDF 342

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++AK   I VGPGRGS AGS+ AY L ITDIDP+R++L+FERFLNP+R+SMPD DIDFC
Sbjct: 343  IKYAKDQGIAVGPGRGSAAGSIVAYTLGITDIDPIRYNLIFERFLNPERVSMPDIDIDFC 402

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EVI YV+ KYG ++VAQIITFG++ A+ A+RDVGR + MPY++VD++ K IP   
Sbjct: 403  YERREEVINYVKAKYGQDKVAQIITFGTMAARGAIRDVGRVVNMPYNEVDQIAKEIPFTL 462

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A+  +   R+    +   + L+ +++KLEG+ RHASTHAAG+VI  +PL Q +
Sbjct: 463  GITIE-KALEVNPVLRKMYQENDDANYLIRMAKKLEGMPRHASTHAAGVVIAKKPLDQHI 521

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
            P+Y  +  +   TQF M  +E+ GL+K DFLGL+TLT+++ +L+ + A  G++V      
Sbjct: 522  PLY--MHDNSMTTQFTMGTLEELGLLKMDFLGLRTLTVIRDALELIKANHGLEVSFEDSE 579

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            + D + Y L+    TLG+FQLES GM Q +  ++PD  EDI+A +SL+RPGP+++I  Y 
Sbjct: 580  YTDPKVYELIGRGETLGVFQLESQGMIQFMRELKPDNFEDIVAGISLFRPGPMESIPKYI 639

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              KN  EKI  +H  ++P+L  T G ++YQEQVMQ+ + L+GYS   +D++RRAMGKK +
Sbjct: 640  EYKNNHEKIEYLHESLEPILNMTYGCMVYQEQVMQVVRDLAGYSYGRSDLVRRAMGKKKR 699

Query: 723  EEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + M+++++ F            I G  + GI + IA  I++ +  FA+Y FNKSHAA+YA
Sbjct: 700  DVMEEERKYFIYGKESEAGELEIEGCIRRGIPENIANEIYDQMIDFANYAFNKSHAASYA 759

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            V+SYQTA++K HYPVEF+AA MT  M N  K+  + QD ++  ++I+ PS+N     F V
Sbjct: 760  VLSYQTAYLKCHYPVEFMAALMTSVMGNTLKVVHYIQDVKRQGMEILSPSINKSYSKFAV 819

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             DN+I + LAA+K VG      I+E    K  F S  DFC +V SK LN+R +ESL+  G
Sbjct: 820  EDNQIRFGLAAVKNVGGNMIDAIVETRNHKGSFTSFTDFCQKVPSKDLNKRSIESLIKCG 879

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVEN 947
            A DC    R QLL   + +        K        +F    G  S  ++  L      N
Sbjct: 880  AFDCLEVYRAQLLAIYEKVLDSVYHDRKRNIQGQLGLFEGPSGMPSNLNEGLLPNIKEFN 939

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-----------RGNNIR 996
              +R   E+ VLG Y SGHPL  Y+  L K  +  Y   +               G+ + 
Sbjct: 940  DKLRLNMEKEVLGLYISGHPLAAYEKELSK-KVSAYSNQLVLSLEEDDNEQEWKEGDRVI 998

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  +V+ K  K T+    + +VT  +     E   FP
Sbjct: 999  IGGIVIEKTIKTTKHQQIMAFVTVEDLFGVVECVVFP 1035


>gi|300690877|ref|YP_003751872.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum PSI07]
 gi|299077937|emb|CBJ50577.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum PSI07]
          Length = 1174

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/991 (40%), Positives = 597/991 (60%), Gaps = 38/991 (3%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SP FVHL++HS YS+++G + L+  +   AAD   A+A+TD  N F  + F ++A   G+
Sbjct: 3   SPRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKGV 62

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           +P++G         ++ +TN  +   P    ++LLV   +GY  L  L++R +L +Q + 
Sbjct: 63  KPVVGA--------DVWITNHDERDKPG--RLLLLVRNKQGYLNLCMLLARAWLSNQHRG 112

Query: 128 SVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
              I   W  E G E      GL+ L+G   G I  A    +  +A K    +  +F + 
Sbjct: 113 RAEIAPEWFGEPGVEDAPLATGLLALSGAMGGDIGMALANGNEALARKLAAQWSSVFPEA 172

Query: 182 LYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            Y+ LQR    G + Y + + V+LA +  LP+VAT+   F++ +D+ AH+  + +A   +
Sbjct: 173 FYIELQRAGQAGTEAYVQ-RAVKLAASMHLPVVATHPVQFMTPDDFTAHEARVCIAEGDL 231

Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           ++   R R  T D Y K + EM ++F+D+P AL N V+IA+RC+  L++  P LP F   
Sbjct: 232 LANPRRARRFTTDQYFKTQDEMCALFADIPSALANAVQIAQRCNLTLELGKPKLPLFPTP 291

Query: 299 ECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
           +   +    ++ L + A  GLE R   L      +     +Y  RL+FE   I +M F G
Sbjct: 292 DGMSL----DDYLAHLAKQGLEQRMEVLFPDPAVREAKRPEYYARLEFETGTIIKMGFPG 347

Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
           YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 348 YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407

Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
           PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD +
Sbjct: 408 PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467

Query: 476 CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            KLIP  P   V+L+ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 468 AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527

Query: 535 GDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLA 590
               L+   P+Y     D  V +Q++   +E  GL+KFDFLGL TLT+L   ++ +  L 
Sbjct: 528 APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587

Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 + S IP  D   + +L T  T+ +FQLES GM+  L+  +PD  EDIIALV+LY
Sbjct: 588 PSRADWNCSHIPLTDKAAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647

Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           RPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  A
Sbjct: 648 RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
           D+LRRAMGKK  EEM + +  F +GA+K+G++   A  IF+L+ KFA YGFNKSHAAAYA
Sbjct: 708 DLLRRAMGKKKAEEMAEHRALFRAGAAKDGLTTEKADEIFDLMEKFAGYGFNKSHAAAYA 767

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPSVNTPCVDFK 829
           +++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DA   N ++++PP +N     F 
Sbjct: 768 LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDAEGKNGLKVLPPDINASQYRFT 827

Query: 830 VGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D + + Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV A
Sbjct: 828 PTDAKTLRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887

Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF--SVE 946
           GA D    +R QLL S+  +   A   +    N+  ++F    G  +++   E    +  
Sbjct: 888 GAFDSLNDNRAQLLVSI-GLAMEAAEQKAAAANQ-VSLFDLMSGDDAEEHRPELLDEAPW 945

Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
            +  + + E++ LGFY SGH  D  +  +R+
Sbjct: 946 TTKRKLQEEKQALGFYLSGHLFDECRDEVRR 976


>gi|313680738|ref|YP_004058477.1| DNA polymerase III subunit alpha [Oceanithermus profundus DSM 14977]
 gi|313153453|gb|ADR37304.1| DNA polymerase III, alpha subunit [Oceanithermus profundus DSM 14977]
          Length = 1222

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1094 (38%), Positives = 614/1094 (56%), Gaps = 89/1094 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            F HL  H+ +SLL+GA  L+ ++   K      PA+A TD  NLF A++F +KA AAG++
Sbjct: 3    FAHLHQHTQFSLLDGAAKLDELIQWVKQTTPDDPALATTDHGNLFGAVQFYKKATAAGVK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG +  +  +     T + K        + LL    +GYQ L+ L SR YL +     
Sbjct: 63   PIIGYEAYVAAESRFDRTMR-KGLDGGYFHLTLLAKDFKGYQNLVRLASRAYL-EGFYMK 120

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L+E   EG+I L+G     I +    +   +AE+RL  + ++FGDR ++ +Q 
Sbjct: 121  PRIDREILRE-HNEGIIALSGCLGAEIPQFILADREDLAEERLNEYLEIFGDRYFIEIQD 179

Query: 189  HRGYDRYRESQVV--QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H G +  ++   V  + A  + L +VATN+  ++ +ED  AH+VL+A+     ++ +DR 
Sbjct: 180  H-GLEEQKKVNAVLREFAQKYGLGMVATNDGHYVKQEDARAHEVLLAIQSKATLADEDRW 238

Query: 247  RVTPDH-YLKNRSEMVSIFSDLP-EALENTVEIARRCSFILQVHAPI---LPRFIEKECD 301
            +   D  Y+K   EM     D P E   N+ EIA  C+  L V   +   +PR+   E  
Sbjct: 239  KFPCDEFYVKTPEEMKKALPDWPDEIFSNSAEIAAMCNVELPVGDKMTYRIPRYPLPEGR 298

Query: 302  DIQKEEENELRNKAVAGLEVRL---AQGAIAKGY-------HAQD--------------Y 337
            D    E   LR     GL  R       A+ + Y        A+D               
Sbjct: 299  D----ENQYLRELTFKGLLERYPDRVNPALYRAYLTRLEIEPAEDEEDLILQLARLDRKA 354

Query: 338  RQRLDF---------------------ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            R+R+DF                     EL  I +M F GY LIV D+I WAK + I VGP
Sbjct: 355  RERVDFFPDVRNVQEWDGWATLARAEYELGTIEQMGFPGYLLIVQDYINWAKNHGISVGP 414

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGS AGS+ AYA+ IT+IDPL F LLFERFLNP R+SMPD D DF   RRDEVI YV+ 
Sbjct: 415  GRGSAAGSLVAYAIRITNIDPLEFGLLFERFLNPARVSMPDIDTDFSDVRRDEVIDYVRE 474

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADD 495
            +YG ++VAQI TFG+L +KAAL+DV R   + Y + ++L KLIP     P+ L +A+   
Sbjct: 475  RYGEDKVAQIATFGTLASKAALKDVARVYGLEYKRAEQLAKLIPVQFGKPLPLARAMEQI 534

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
               + A   D +V  +LEI+Q+LEGL RHAS HAAG+VI D PL+ LVP+ RD R D  V
Sbjct: 535  PELKAAMRQDETVREVLEIAQRLEGLNRHASVHAAGVVIADEPLTNLVPLMRDTRGDGVV 594

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTT 614
            TQ++M  +E  GL+K DFLGL+TL+ L ++   + +  GV++D   +P DD +T+ +L  
Sbjct: 595  TQYDMGSVEALGLLKMDFLGLRTLSFLDEAKRIVKESAGVELDYDNLPLDDPKTFEMLGR 654

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
              T G+FQLE +GM   ++  +P+ + DIIA+VSLYRPGP+DNI  Y  R++G+E +   
Sbjct: 655  GDTKGVFQLEGTGMTNTVKAFKPERLHDIIAIVSLYRPGPMDNIPTYLRRRHGQEPVSYA 714

Query: 675  H-----PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
                   +++P+L ET G+ +YQEQ+MQIA  ++GY+L EAD+LRRAMGKK  EE+   +
Sbjct: 715  EFPHAAEMLEPILAETYGIPVYQEQIMQIASAVAGYTLGEADLLRRAMGKKKVEELKAHR 774

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            +RFI+GA K G+    A  IF+LL  FA+YGFNKSHAAAY++ISYQTA++K H+PVEF+A
Sbjct: 775  DRFITGAEKRGVPPDEASRIFDLLEAFANYGFNKSHAAAYSLISYQTAYVKAHFPVEFMA 834

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +T+E  N +K+ ++ +DA    I ++PP +N    DF+V    I + L+A+K VG   
Sbjct: 835  ALLTVERRNSDKVAEYIRDAEAGGIHVLPPDINRSGADFRVVGREILFGLSAVKNVGEGA 894

Query: 850  ARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
               I+ E     PF SL DF  RVD   +N+R LESL+ AGA D FG  R Q+L +++ +
Sbjct: 895  VESILNEREKGGPFRSLPDFLRRVDLHHVNKRALESLIKAGAFDAFG-ERGQMLDAMEGL 953

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKIT---LEKFSVENSSVRFENEQRVLGFYFSG 965
             K+A         + +       G F D +T   L + +     +R   E+  LG Y +G
Sbjct: 954  LKWA-------AAEQQKAAGGLTGLFDDGLTEPPLPETAPLEEVIRLRFEKEALGIYVTG 1006

Query: 966  HPLDVYKPILRKMGI-------KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            HPL+ Y P L +          + YE++  +     + LA MV    ++ TR G  +   
Sbjct: 1007 HPLEHY-PGLAEAATCQVTELARWYEQNSGSKSRVRVLLAGMVEQITRRSTRSGGMMARF 1065

Query: 1019 TFSEPAKEYEANFF 1032
              ++ +   E   F
Sbjct: 1066 NLADASGALEVVVF 1079


>gi|115380319|ref|ZP_01467326.1| DNA polymerase III alpha subunit [Stigmatella aurantiaca DW4/3-1]
 gi|115362676|gb|EAU61904.1| DNA polymerase III alpha subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 1058

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/1016 (40%), Positives = 597/1016 (58%), Gaps = 57/1016 (5%)

Query: 52   LFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
            +F+ ++F +KA  AGI+PIIG +  +      +  ++          ++L+   AEGY  
Sbjct: 1    MFATIDFYKKAKDAGIKPIIGMEAYVAGTKGREDRSE-----KVAHHLILVAQNAEGYAN 55

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L  L S  Y+ D      RI    L +  ++GL  LT    G +  A F      A +  
Sbjct: 56   LRYLSSTAYM-DGFYYHPRIDKKVLAQ-HSKGLFALTACLGGEVTSACFRGDMDHARRAA 113

Query: 172  LTFKKLF-GDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              +K +F     ++ +Q +   ++ + ++ + QL+   ++PL AT ++ ++  ED  AH+
Sbjct: 114  TEYKDIFEPGHFFLEVQSNGIPEQDKANENLKQLSRDLDIPLCATADAHYIKREDARAHE 173

Query: 230  VLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            +LM +A    +S   R R + D  Y+ +  EM+  F D PEA+ NT  IA +C+  L++ 
Sbjct: 174  LLMCIASGKTLSDGKRLRHSTDKLYVTSPQEMLEFFRDTPEAVHNTQVIADQCNLELKLG 233

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ--GAIAKGYHAQDYRQRLDFELN 346
             P+LP F   +        ++ +   A  GL  R  +   A AK +  + YR RL+ ELN
Sbjct: 234  KPMLPTFKVPDS----HTPDSFMAELAFEGLHERFKELHHAGAK-FDPEMYRARLNLELN 288

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI +M FSGYFLIV DFI WAKK NIPVGPGRGSGAGS+ AYAL ITD+DPL ++LLFER
Sbjct: 289  VIQKMGFSGYFLIVQDFINWAKKANIPVGPGRGSGAGSLVAYALRITDLDPLPYNLLFER 348

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPDFDIDFCQDRRDEVI+YV  KYG   V QIITFGSL+AK+ LRDV R   
Sbjct: 349  FLNPERVSMPDFDIDFCQDRRDEVIKYVSQKYGEMNVGQIITFGSLKAKSVLRDVCRVFG 408

Query: 467  MPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPS-----------VDRLLEI 514
            +P+S+ DR+ KL+P      ++L +AI  ++R +E  +  PS              +LEI
Sbjct: 409  LPFSEGDRIAKLVPE--VLGITLKEAIEQEARLKEM-MEKPSNVGEVEGKPVTTKDVLEI 465

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            +  LEGL+R    HAAG+VI D+PL + VP+Y+       +TQF    +E AGL+KFDFL
Sbjct: 466  ALALEGLHRQPGMHAAGVVIADKPLWEFVPVYQPPGEKTLITQFAKDEVEAAGLVKFDFL 525

Query: 575  GLKTLTLLQKSLDFLAQR---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            GLKTLT++Q +LD + +    G K++   IP  D   + L+    T G+FQ+ESSG  + 
Sbjct: 526  GLKTLTVIQNALDLINRNPPNGKKLERQDIPLHDELMWKLMADGDTAGVFQMESSGFTEM 585

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
            +  ++P C ED+IA  +LYRPGP+D+  + V+ NRK+G+E +   HP ++P+LK+T GVI
Sbjct: 586  VMKLKPSCFEDVIAAGALYRPGPLDSGMVDVFINRKHGREPVTYPHPALEPVLKDTYGVI 645

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI+Q+L GY+L  AD+LRRAMGKK  E M  ++  F+ G  KN +   +A  I
Sbjct: 646  VYQEQVMQISQVLGGYTLGRADLLRRAMGKKKAEVMQAERAGFLEGCKKNNVDLKVAGEI 705

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            F+L+ KFA+YGFNKSH+AAY +I+  TAW+K H+PVEF+AA +T E DN +K+ +   +A
Sbjct: 706  FDLMEKFAEYGFNKSHSAAYGLITIHTAWLKAHFPVEFMAALLTSEKDNTDKVVRHIGEA 765

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
            R+   Q++PP VN   + F   D +I + L AI GVG      I+EA  D  F  L DFC
Sbjct: 766  REAGHQVLPPDVNQSDMAFGAVDGKIRFGLGAINGVGEGAIESIVEARKDGFFKGLFDFC 825

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA- 928
             RVDS+++N++VLE+LV AGA D     R QL ++++         +K++     ++F  
Sbjct: 826  ERVDSRRVNKKVLEALVKAGAFDFEKRPRRQLFETIERAMNRGSASQKDKAAGQSSLFGM 885

Query: 929  -------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                      G   D   +E++  E   + FE +   +GFY SGHPL  Y   L++    
Sbjct: 886  LAGPAAGGGGGMKDDYAQVEEWP-EKERLAFEKD--AIGFYVSGHPLHQYDKELKR---- 938

Query: 982  GYEESVATI----RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             Y   V ++    R   I +  +V + +++ T+ G R+ WVT  + +   E   FP
Sbjct: 939  -YARPVTSVQRARRDEKITVGGIVAALRERPTKTGKRMAWVTLEDLSGSIELVCFP 993


>gi|78044608|ref|YP_359983.1| DNA polymerase III DnaE [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996723|gb|ABB15622.1| DNA polymerase III, alpha subunit [Carboxydothermus hydrogenoformans
            Z-2901]
          Length = 1116

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1041 (39%), Positives = 615/1041 (59%), Gaps = 58/1041 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  HS YSLL+GA  + +++ +    + PA+A+TD  NLF  +EF ++A A GI+P
Sbjct: 2    SFVHLHTHSCYSLLDGAGKIKDLVGRAVELKMPALALTDHGNLFGVIEFYKEAKAQGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF--PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            I+G ++ +  +     T   KTP     +  +VLL     GYQ L+ LVSR Y  +    
Sbjct: 62   ILGVEVYVAPR-----TRFDKTPKIDDQLTHLVLLAKDRTGYQNLLRLVSRSYT-EGYYY 115

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              R+    L E  ++GLI L+   +G I         + A +    ++ +FG +  Y+ L
Sbjct: 116  KPRVDKQLLAE-NSQGLIALSSCLAGEIPELILSGQREKAREVAGIYRDIFGKENFYLEL 174

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H     +    +++ L+    +PLVATN+  ++ +E  + HDVL+A+     ++   R
Sbjct: 175  QYHGISEQKVVNRELIALSKQLNIPLVATNDVHYILKEHAKTHDVLLAIQTGKSINDPGR 234

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             +  T + YLK   EM  IF +LP+AL+NT+ IA +C+   +    +LP F   E     
Sbjct: 235  MKFPTEEFYLKTPYEMELIFGELPDALKNTLNIAEQCNLEFEFGRYLLPDFPVPEG---- 290

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K     L+     GL  R            ++ + RL  EL +I +M FSGYFLIV DFI
Sbjct: 291  KTPAQYLKELCFQGLYKRYPN-------PGEEVKTRLLHELKIIEQMGFSGYFLIVWDFI 343

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A++  I VGPGRGS AGS+ AY L ITDIDPL++ LLFERFLNP+R+SMPD D+DFC 
Sbjct: 344  RYAREKGIMVGPGRGSAAGSLVAYTLEITDIDPLKYGLLFERFLNPERVSMPDIDVDFCF 403

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI Y+  KYG +RVAQIITFG++ AKAA+RDVGRAL  PYS+VD++ KLIPN   
Sbjct: 404  ERRQEVIDYLYQKYGEDRVAQIITFGTMAAKAAVRDVGRALDWPYSEVDKIAKLIPN--V 461

Query: 485  HPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              ++L+ AI      +     +P V  LL++++++EG+ RHAS HAAG+VI    + + +
Sbjct: 462  LGITLEEAIETTPELKTLYQNNPKVRELLDLARQIEGMPRHASVHAAGLVIAPEEIDKHI 521

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602
            P+++     +  TQF    +E+ GL+K D LGL+TLT+++K+LDF+  Q G +++L  IP
Sbjct: 522  PLFK-TSEGVVTTQFEKDTVEELGLLKIDLLGLRTLTVIEKALDFIKKQTGKEINLKDIP 580

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD +TY LL    T+G+FQLES GMRQ L+ ++P  IED+IALV+LYRPGP+ + +V  
Sbjct: 581  LDDEKTYKLLGEGDTVGVFQLESQGMRQILKELKPTSIEDLIALVALYRPGPLGSGMVED 640

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + NR++G+  +   HP ++P+L+ET GVI+YQEQVM IA +L+G+SL EAD+LRRAMGKK
Sbjct: 641  FINRRHGRVPVEYPHPDLEPILRETYGVIVYQEQVMLIASVLAGFSLGEADLLRRAMGKK 700

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              E +   K  FI  +   G  +  A  IF L+  FA YGFNKSH+AAYA ++Y TAW+K
Sbjct: 701  KPEIIAALKNDFIERSVARGYPREKAEEIFNLIEYFAGYGFNKSHSAAYAFVAYYTAWLK 760

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             ++PV FLAA +    DN++K+  + +D ++  I+++PP +N   VDF +    I + LA
Sbjct: 761  ANFPVAFLAALLISVKDNLDKVTVYAEDCQRRGIKVLPPDINLSEVDFTISGQEIRFGLA 820

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            A+K VG   A  I+E     PF    DF  R+D K +N+RV+ESL+ AGA   FG++R  
Sbjct: 821  AVKNVGEAAAAKIIEERQKGPFRDFNDFLHRIDKKTVNKRVIESLIKAGAFASFGFNRKT 880

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF---SDKITL---EKFSVENSSVRFEN 954
            LL +LD+  ++         +K  N      G F   +D+  L   E+FS +   +R E 
Sbjct: 881  LLNNLDDALEF--------YSKKSNGVQLTLGDFLPEADRYNLRLEEEFS-KLELLRMEK 931

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN--NIRLAAMVVSKQQKKTRKG 1012
            E   LG Y +GHPL          G++ + +    ++ N   I   A++   ++  TR+G
Sbjct: 932  ES--LGLYLTGHPL---------AGLRSFIQKHCNLKENKEKIYYPAILAEIKRTVTRRG 980

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + +       +  EA  FP
Sbjct: 981  EPMAFALLEGLNQTVEAVIFP 1001


>gi|238028202|ref|YP_002912433.1| DNA polymerase III subunit alpha [Burkholderia glumae BGR1]
 gi|237877396|gb|ACR29729.1| DNA polymerase III, alpha subunit [Burkholderia glumae BGR1]
          Length = 1182

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/1035 (40%), Positives = 610/1035 (58%), Gaps = 59/1035 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F ++A + GI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARSKGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC        ++ +TN      P    ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGC--------DVWITNHDDRDKPA--RLLLLVRDKSGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL+     GL+ L+G   G I  A    +++ A +    + ++F    Y+ LQR
Sbjct: 114  AEIDPQWLESELGGGLLALSGAQQGDIGIALAAGNNESARRHAQRWARVFPGSFYIELQR 173

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y +   V+LA   +LP+VAT+   F+ +ED+ AH+  + ++   +++   R 
Sbjct: 174  YGQPGAEAYIQD-AVKLAAELKLPVVATHPLQFMEDEDFTAHEARVCISEGDILANPRRQ 232

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T +   + ++EM  +F+DLP A+ NTVEIA+RC+  +++  P LP F   +   +  
Sbjct: 233  KRFTTEQRFRTQAEMAELFADLPSAVLNTVEIAKRCNLTIELGKPKLPLFPTPDGMSL-- 290

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GLE RL Q       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 291  --DDYLVQLSKEGLEKRLVQLYPDEAERDAQRDTYYQRLDFECGTITKMGFPGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 409  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 469  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  F+ +    K D SL
Sbjct: 529  FCPLYAQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERFIRRLDPTKADWSL 588

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 589  AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 649  PSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 709  KKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGD----- 832
            +K H+P EF+AA+MTL MD+ +K+K    D     I+++PP +N     F+ VG+     
Sbjct: 769  LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVLNGIKVLPPDINQSEYRFEPVGEADGKR 828

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I Y L A+KG G      I+ A  +  PF  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 829  SKTIRYGLGAVKGSGQNAIEEILRARREGGPFKDLFDFCERIDRRMVNRRTVEALIRAGA 888

Query: 891  LDCFGYSRMQLLQSL----------DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             D    +R QLL S+                A   +    + H +    E   + DK   
Sbjct: 889  FDSLTPNRAQLLASVPLAMEAAEQAAANAMQAGLFDMGAESPHAHALVDEP-AWDDK--- 944

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                      R + E+  LGFY SGH  D Y+  +R+       E      G +  +A +
Sbjct: 945  ---------RRLQEEKGALGFYLSGHLFDAYRAEVRRFARMKLGE---LKEGRDKLVAGV 992

Query: 1001 VVSKQQKKTRKGSRI 1015
            + S + + T++G  I
Sbjct: 993  IASLRTQMTQRGKMI 1007


>gi|319942633|ref|ZP_08016941.1| DNA polymerase III alpha subunit [Sutterella wadsworthensis 3_1_45B]
 gi|319803812|gb|EFW00744.1| DNA polymerase III alpha subunit [Sutterella wadsworthensis 3_1_45B]
          Length = 1153

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/1028 (39%), Positives = 592/1028 (57%), Gaps = 51/1028 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            L  SP FVHL+ HS YS+ +G + ++ ++  +      A+ I+D  N+F  L F   A A
Sbjct: 18   LMPSPRFVHLRFHSEYSITDGIVRIDPMIHAVLEGGGAAVGISDLMNVFGGLRFYTHALA 77

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PI+GC L +    N K  N+   PF     + +L    EGY  L  L+++ +L + 
Sbjct: 78   AGLKPILGCDLKVI---NPKDLNK---PF----RLGVLCMNHEGYHSLSVLLTKAFLTNN 127

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  +   W  + G+EGLI L+G + G +          +A +    FK  F  R YV
Sbjct: 128  DAARGLVDPKWFDDGGSEGLIALSGAAQGELGSLLLGKKWALAHEAAERFKAQFPGRFYV 187

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR  R  D    +++   A   +LP+VAT+   FL  ED+EAH+V  ++A    +   
Sbjct: 188  ELQRAGRPTDELATARLANFAVEEKLPVVATHPIQFLKPEDFEAHEVRCSIAEGYTLQDP 247

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF------- 295
             R  R TP+ YLK+ +EM  +F+D+P A+ENTVEIA+RC+    +  P LP F       
Sbjct: 248  RRVKRYTPEQYLKSEAEMCELFADIPAAIENTVEIAKRCNLDGVLSKPQLPLFPTPDGMS 307

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMK 352
            ++   D + KE           GL+ RL                Y +RL++EL +I  MK
Sbjct: 308  LDDYIDQLSKE-----------GLQKRLEFLYPDPKVLEERRPPYDKRLEYELGIIKGMK 356

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFLIV DFI W+K + +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R
Sbjct: 357  FPGYFLIVQDFINWSKTHGVPVGPGRGSGAGSLVAYSLGITDLDPLHFDLLFERFLNPER 416

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFD+DFCQ  RD  I YV+  YG + V+QI TFG+L AKA +RDVGRAL +PY + 
Sbjct: 417  VSMPDFDVDFCQYNRDRTIDYVKRTYGVDAVSQIATFGTLGAKAVVRDVGRALDVPYMKT 476

Query: 473  DRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            D L KLIP  P   +SL  AIA+   F+EA   D     ++ +++ LEGL R+   HA G
Sbjct: 477  DALAKLIPMQPGRNISLDDAIAEVPEFKEAIERDDEYKEIIRLAKPLEGLTRNLGMHAGG 536

Query: 532  IVIGDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            ++I    L+   P+Y  D R +  ++QF+ K +E  GL+KFDFLGL TL++L K+++ + 
Sbjct: 537  VLIAPGKLTDFCPLYNSDGRPENTISQFDKKDVENVGLVKFDFLGLTTLSILAKAVEIID 596

Query: 591  QRGVK--VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            +   +   +L  IP DD  TY L     T  +FQ ES GMR  L+  +PD +ED++AL +
Sbjct: 597  KLYPEQHFELERIPVDDAATYELFQQANTAAVFQFESDGMRGLLKQARPDRLEDLVALNA 656

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  Y +RK G+EK+  +   ++P+LKET G+++YQEQVM++AQ++ GYSL 
Sbjct: 657  LYRPGPMDLIPSYIDRKFGREKVEYLDDRMEPVLKETYGIMVYQEQVMRVAQVVGGYSLG 716

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM +Q+  FI GA + G+ +++A  IF+L+ KFA YGFNKSHAAA
Sbjct: 717  GADLLRRAMGKKNVEEMKRQRAVFIKGAGERGVKESVATEIFDLMEKFAGYGFNKSHAAA 776

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ ++YQTA++K H+   F AA++ + MD+ +K+K    DAR   +    P VN     F
Sbjct: 777  YSYVAYQTAYLKVHHTAAFFAANLCMVMDDGDKMKALIDDARANGVDFRLPDVNVSEWFF 836

Query: 829  KV-GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V  +N I   L AIKG+       I+ E  A+ PF+ + DF +RV+   +N R+ ES+V
Sbjct: 837  SVPTENVIQLGLGAIKGINRALVEAIVSEREANGPFEDIFDFAARVEG--VNFRIFESMV 894

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGA D     R +L  ++ N  +    V +  +   +++F  E+     K  +     E
Sbjct: 895  RAGAFDSTDADRGKLFSNISNALQGGAAVRQ--SAGQDSLFGGEE----TKKIVNWVEGE 948

Query: 947  NSSVR--FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              S R   E E    GF  SGH  D YK  LR +G    +E    +   N+ +  ++ S 
Sbjct: 949  QWSFRRNLEEEMTAFGFSLSGHFFDEYKDDLRAIGCMPLDE--LQVSKENVCVGGVISSI 1006

Query: 1005 QQKKTRKG 1012
            +Q   ++G
Sbjct: 1007 RQINGKRG 1014


>gi|152992163|ref|YP_001357884.1| DNA polymerase III subunit alpha [Sulfurovum sp. NBC37-1]
 gi|151424024|dbj|BAF71527.1| DNA polymerase III, alpha subunit [Sulfurovum sp. NBC37-1]
          Length = 1188

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/1043 (38%), Positives = 616/1043 (59%), Gaps = 49/1043 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL +H+ YSLL+GA  +  +  K+      ++A+TD  N+F  ++F       GI+
Sbjct: 9    PQFTHLHLHTEYSLLDGANKIKALAKKVKELGMTSVAMTDHGNMFGTIDFYNTMRKEGIK 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG +  +  Q  L     G         + L      GY+ L+ L S+ Y+ +     
Sbjct: 69   PIIGMEAYVHNQPEL-----GDKSVRQRFHLCLYAKNEAGYKNLMFLSSKAYI-EGFYYY 122

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPI-------DRAFFFNSSQVAE-KRL-LTFKKLFG 179
             RI  + L+E   EGL+  +    G +       +R   F +    E KR+ L +K++FG
Sbjct: 123  PRINWNLLKE-HAEGLVCSSACLQGEVNWHLNLSERNLKFGAKGYEEAKRIALKYKEVFG 181

Query: 180  DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            D  Y+ L RH   D++R + Q++QL+    + +VATN++ + + +D +AH+  M +A + 
Sbjct: 182  DDFYLELMRHGIGDQHRIDKQILQLSQETGIKIVATNDTHYTNPQDADAHEAFMCIAMNK 241

Query: 239  VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP--RF 295
            +    +R R    + Y+K+  +M  +F+D+PEALE T EI  +C+  +++  P  P  +F
Sbjct: 242  LYDDPNRLRHSVHEFYVKSPEQMAELFADIPEALEATQEIVDKCNLEIKLGNPTPPNFKF 301

Query: 296  IEKECDDI-----QKEEENELRNKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDF 343
              ++  +I     + E E  L N  +        GL  RL    I      Q+Y  RL  
Sbjct: 302  AREKAKEIGLKLPEPEVEYSLENDKILFIEESKRGLVERLK---IVPEEKHQEYWDRLQV 358

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            E+++I  MKF GY LIV +F+  AK+  IPVGPGRGS AGS+ AYAL ITDIDP+ + LL
Sbjct: 359  EIDIINNMKFPGYMLIVWEFVDAAKRMGIPVGPGRGSAAGSLVAYALRITDIDPMPYGLL 418

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R+SMPD D+DFCQ RR E++ YV  KYG   VAQIITFG L AK  +RDV R
Sbjct: 419  FERFLNPERISMPDIDMDFCQARRQEILDYVVEKYGRVNVAQIITFGKLLAKGVIRDVAR 478

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLY 522
             L MPYS+ D + KLIP++    + L+A  + + + +E   +DP   R  E +  LEGL 
Sbjct: 479  VLDMPYSKADAMAKLIPDELG--IDLKASYEKEPKIKELLESDPQAKRTWEYALALEGLN 536

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R+A THAAG+VI +  L Q  P+++    D   TQ++ K++E   LIKFDFLGLKTLT++
Sbjct: 537  RNAGTHAAGVVISNEALWQKTPLFKPSGLDTLATQYSGKYVEDVDLIKFDFLGLKTLTVI 596

Query: 583  QKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            +++L  + +R G +++      +D + Y  ++T  TLG+FQ+ES+GM+   + ++P   E
Sbjct: 597  EEALQLVEKRHGKRINFVEENIEDPKVYDYISTGETLGLFQIESAGMQDLAKKLKPSSFE 656

Query: 642  DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ ++  +  RK+G+ +I    P ++P+LK T GVI+YQEQVMQI 
Sbjct: 657  DIIAMLALYRPGPMESGMLDDFVERKHGRAEITYAFPELEPILKPTYGVIVYQEQVMQIV 716

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q + G+SL  AD++RRAMGKKIKEEMDK K+ F  GA++ G  +  A ++F+L+ KFA Y
Sbjct: 717  QTIGGFSLGGADLVRRAMGKKIKEEMDKLKDEFAEGAAEKGFDRAKAADLFDLIVKFAGY 776

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA++++ T+++K +YP EF+AA +TLE +N +K+ K+  + +Q  I+++PP
Sbjct: 777  GFNKSHSAAYAMVTFYTSYLKYYYPTEFMAAILTLEKNNTDKVVKYVDELKQMGIKLLPP 836

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
             +N   + F+     GD  + + + AIKG G      ++EA  +  F    DF SR+DS 
Sbjct: 837  DINRSGLVFEATNIDGDEVVMFGMGAIKGAGDIAITSMLEAREEGAFRDFSDFVSRIDSS 896

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+N++V+ESL+ AGALD FGYSR  +L  +++I   A+   + R     ++F   +G   
Sbjct: 897  KVNKKVIESLIKAGALDSFGYSRKAMLSQIEDIIDTAKKAGEARKMAVGSLFG--EGEEM 954

Query: 936  DKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
              +TLE   +E        E E+  LGFY SGHPLD Y+  L  +      E      G+
Sbjct: 955  TSVTLELSHMEEFEPMEILEMEKESLGFYVSGHPLDKYRETLESINYTLSSEIDDLADGS 1014

Query: 994  NIRLAAMVVSKQQKKTRKGSRIG 1016
                   + S  +K ++KG++ G
Sbjct: 1015 QALFIGKIESITEKISKKGNKFG 1037


>gi|203288019|ref|YP_002223034.1| DNA polymerase III, subunit alpha [Borrelia recurrentis A1]
 gi|201085239|gb|ACH94813.1| DNA polymerase III, subunit alpha [Borrelia recurrentis A1]
          Length = 1144

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/973 (41%), Positives = 591/973 (60%), Gaps = 35/973 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL VHS +SLL+GA  + +I+ K        IA+TD  NLF A++F ++A  AGI+PI
Sbjct: 7   FVHLHVHSDFSLLDGAAKIVDIVSKAKEYNMSHIALTDHGNLFGAIKFYREAKKAGIKPI 66

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG  ++  M + LK   +          ++LL    +GY+ L++L S  YL +      R
Sbjct: 67  IG--IEAYMSNTLKYIKKNDEFGKPYYHLILLAKNEQGYKNLLKLTSVSYL-EGFYYRPR 123

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           +    L +  +EGLI ++    G I +    N    A+  +L FK  FGD  Y+ LQRH 
Sbjct: 124 MDRDDLAKY-SEGLICMSACIGGIIPQLILSNRFDDAKNEILWFKNTFGDDFYLELQRHG 182

Query: 191 GYDRYRESQVVQ---LAYTHELP--LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                ++  +V    +AY+ EL   L  +N+S ++++ED  A D+++ +      S   R
Sbjct: 183 ----IKQQDIVNEKLIAYSKELDVQLSVSNDSHYVNKEDATAQDIIVCIGTGAKRSDSGR 238

Query: 246 PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRFIEKECDDI 303
            ++  D  YLK+  EM  +F DLPEAL NT++IA +C+ F ++   PI P +   E  D 
Sbjct: 239 FKMETDEFYLKSPEEMCELFKDLPEALANTLKIAEKCNDFEIKFPGPIFPEYHIPEEFDT 298

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
           Q +    L +  + GL+ R A           + ++R  +EL+ I  M F  YFLIV DF
Sbjct: 299 QGQY---LEHLTLEGLKFRYAN-------ITDNIKERAFYELSTIINMGFEAYFLIVWDF 348

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           I++A  N+IPVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFC
Sbjct: 349 IKFAHDNDIPVGPGRGSGAGSIVAYALRITDVDPLKYNLLFERFLNPERVSMPDFDIDFC 408

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RDEVI+YV  KYG ++VAQIITFG+L+ KA  +DVGR L +P+ Q + + KLIP+ P
Sbjct: 409 FEGRDEVIKYVTKKYGEDKVAQIITFGTLKPKAVFKDVGRVLDIPFVQSNEITKLIPDGP 468

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              VSL+ +  D   ++     P  + L+E +  LEG+ RHASTHAAGIVI    L+  V
Sbjct: 469 K--VSLREVLKDKVLKKYLNKGPVYNELMEAALVLEGMNRHASTHAAGIVIARTSLTDYV 526

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
           P+Y+D + D   TQ+ M  +E  GL+K DFLGLKTLTL++ +   +        ++ I  
Sbjct: 527 PLYKDYKQDTVSTQYTMDLLEDCGLVKMDFLGLKTLTLIKNAEKLIKITDPDFSIATISD 586

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            D +T+ +L+   +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  +  
Sbjct: 587 SDAKTFKMLSEGRSTSVFQFESEGMQQILKDSKPDNIEDLIALNALYRPGPMQFIPQFVA 646

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            K G ++I   HP +  +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK ++
Sbjct: 647 AKTGAKRIKYPHPDLTEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKKED 706

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           EM++ K  FI GA + G  +T+A +IFELL  FA YGFNKSHAAAY++I+YQTA++K +Y
Sbjct: 707 EMNRMKVDFIKGALEKGYDETLASDIFELLKPFAGYGFNKSHAAAYSLIAYQTAYLKANY 766

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
           P  F+AA++T E++N EK+  + ++ +   I ++ P +N    DF+V  + I Y L  IK
Sbjct: 767 PASFMAANLTNEINNTEKLSYYIEETKSMGINVLRPDINQSFKDFRVVGSDISYGLNGIK 826

Query: 844 GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            +G      I+ E   +  + S EDF  RVD K +N++ LE+ + +G  D  G +R  L+
Sbjct: 827 NIGELMVDLILNERQENGEYKSFEDFIKRVDKKVINKKFLEASIKSGLFDSLGQNRRTLI 886

Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHE---KGTFSDKITLEKFSVENSSVRFENEQRVL 959
           ++LD +  +    +  +     ++FA +   + TF+  +  E   +E   + FE E  +L
Sbjct: 887 ENLDKLIAFVLENKNAKKQGQNSLFASQNILEETFNYNLFEEYSYLE--LLGFEKE--LL 942

Query: 960 GFYFSGHPLDVYK 972
           GFY SGHPLD YK
Sbjct: 943 GFYVSGHPLDPYK 955


>gi|302871937|ref|YP_003840573.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
            OB47]
 gi|302574796|gb|ADL42587.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
            OB47]
          Length = 1140

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/1043 (37%), Positives = 622/1043 (59%), Gaps = 50/1043 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA  ++ + +++      A+AITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGAMYGVIDFYKAAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSI-------VLLVSTAEGYQRLIELVSRMYLL 122
            IIGC++ +            +T F   P+I       VLL    +GY+ L ++VS +  +
Sbjct: 62   IIGCEVYL----------APRTRFDKEPNIDNDIHHLVLLAIDNDGYRNLSKIVS-IGFV 110

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +      R+    L +  ++GL+ LT   +G I +       +     +  +K++FG+  
Sbjct: 111  EGFYYKPRVDREVLSKY-SKGLVALTSCLAGEIPKLILREQKEKLYDAISFYKEVFGENF 169

Query: 183  YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y  LQ H     R+  +++++L+  +++PLVATN+  +L +ED   HD+L+ +     ++
Sbjct: 170  YFELQYHYIDEQRFVNNELMRLSKKYQIPLVATNDVHYLKKEDRNLHDILLCIQTGKTIN 229

Query: 242  QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              DR    T + YLK+  EM  +F  +PEAL+NT+EIA +C+   +     LP+F   E 
Sbjct: 230  DSDRMEFPTDEFYLKSSEEMHQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +   E   EL   A+ G + R ++       + +    RL  EL VI  M F  YFLIV
Sbjct: 290  KNDSFEYLKEL---ALEGFKKRYSK-------NNKTAYDRLMMELQVIKDMGFVEYFLIV 339

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI +AK+NNI VGPGRGS AGSV AY L IT++DP+++ LLFERFLNP+R+SMPD DI
Sbjct: 340  QDFINYAKQNNIMVGPGRGSAAGSVVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDI 399

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC  RR EVI YV  KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP
Sbjct: 400  DFCYQRRQEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGIPYSQVDEIAKMIP 459

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              P   +  +A+  +   +     + +V ++++ ++ LEG+ RHAS HAAG+VI + P++
Sbjct: 460  FSPGMTID-KALEINHELKRIYERNDTVRKIIDTARNLEGMPRHASVHAAGVVISNSPIT 518

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+ R    D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL 
Sbjct: 519  DLVPLAR--TDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLD 576

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I ++D   Y  ++   T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I 
Sbjct: 577  RIDYNDKNVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIP 636

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            VY   KN +EKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM K
Sbjct: 637  VYIQNKNNREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAK 696

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  + + ++K+RFI GA  NG+ K  A  IF ++  FA Y FNKSHAAAYA+++YQTA++
Sbjct: 697  KKADILMEEKDRFIEGAVANGVKKETAERIFAIIEDFASYAFNKSHAAAYAILAYQTAYL 756

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K +Y +EF+ + +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + L
Sbjct: 757  KKYYTIEFMTSLITSVMNSNEKVGMYIEECRKFGITILPPDINKSSYDFTIEGNSIRFGL 816

Query: 840  AAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIK +G     HI++   +K  F  L DF  RVD+  +N+R++E+L+ +GA D    +R
Sbjct: 817  RAIKSLGENVIAHILKEREEKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTRINR 876

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR--FENEQ 956
              LL S+++I      V K    K+ N F+  + + ++  + E  S+   + +   + E+
Sbjct: 877  NSLLASVEDI-----LVLKQAKKKNANQFSFFEISGNENESFEYKSLPQPTAQELMKMEK 931

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------RGNNIRLAAMVVSKQQKKTR 1010
              +G Y S HPL+ Y   + +  +    E ++T+      +   I +  ++   + K T+
Sbjct: 932  DTIGIYISSHPLERYTEEISRYNVTPLSE-ISTMSEEDEYKFEQILVCGILKEVKVKLTK 990

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
                + +    +     E  FFP
Sbjct: 991  SNQTMAFAKLEDLTDSVEILFFP 1013


>gi|261408717|ref|YP_003244958.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10]
 gi|261285180|gb|ACX67151.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10]
          Length = 1241

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/1052 (38%), Positives = 623/1052 (59%), Gaps = 46/1052 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL+GA  + +++ + AA    ++A+TD   ++ A+ F +   A GI+P
Sbjct: 3    SFVHLHVHSEYSLLDGAARIGDLVREAAALGMKSLALTDHGVMYGAVPFYKACLAQGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  I      +  ++   P   +  ++LL     GY+ L++L S  +L +      
Sbjct: 63   IIGCEAYITAGSRKERGSRKDQP---IYHLILLAKNETGYRNLMKLCSIGHL-EGYHYRP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI +  L     EG+I L+    G + +         A+   L ++ +FG+  Y+ LQ H
Sbjct: 119  RIDMEALA-AHHEGIICLSACLGGEVPQHLLHGREAEAKAAALRYQAIFGEDYYLELQDH 177

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ R   Q++QL+    +PLVATN+  +L+E D E  DVL+ +     V  +DR ++
Sbjct: 178  GMPEQKRVNPQLIQLSRETGIPLVATNDVHYLTENDAEVQDVLICIGTGKTVEDEDRLQI 237

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              +  YLK+ S+M  ++  +PEA+ NT +IA +C   L+    ILP +         K  
Sbjct: 238  QTNQLYLKSGSDMERLYPHVPEAILNTAKIADQCHLELEFGKSILPEY---SSLPEGKNA 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKG-YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               LR+  ++GL  R  +    +      +  QRLD+EL VI  M FS YFLIV DFI +
Sbjct: 295  AEYLRDLCLSGLRERYEETERWQDEVQRSELEQRLDYELGVIESMGFSDYFLIVWDFIAY 354

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF  +R
Sbjct: 355  AHRKGIAVGPGRGSSAGSLVAYTLQITNVDPMKYKLLFERFLNPERITMPDIDIDFSDER 414

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG E VAQIITFG++ A+AA+RDVGRAL +P+  VD+  KLIPN     
Sbjct: 415  RDEVIDYVVDKYGKEHVAQIITFGTMAARAAVRDVGRALNVPFGDVDKAAKLIPNHLGIS 474

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+    + +E     P V  L++++ K+EG+ RHASTHAAGIVI   PL+  VP+ 
Sbjct: 475  IE-RAMEQSPQLKEQYETKPKVRELIDMAMKVEGMPRHASTHAAGIVISREPLTDAVPL- 532

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            ++      +TQ++M+ +E  GL+K DFLGL+TL++++++L ++ +  G ++D   +P DD
Sbjct: 533  QEGSEKTALTQYSMENLESVGLLKMDFLGLRTLSIIERTLKWIQELTGSELDFEQVPDDD 592

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              TY +L    T G+FQLES+G+R+ L+ ++P   EDI+++ +LYRPGP++ I  +   K
Sbjct: 593  QATYEMLGRGETAGVFQLESAGIRRVLKDLKPSVFEDIVSVNALYRPGPMEFIPKFIQAK 652

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+ +    HP + P+L +T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E +
Sbjct: 653  HGRIEPEYPHPDLIPILGDTYGIIVYQEQIMQIASTMAGFSLGEADLLRRAVSKKKREVL 712

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F+SG+ K G ++  A  +++++ +FA+YGF ++HAAAY V+++QTA++K HYPV
Sbjct: 713  DRERSHFVSGSLKLGYTEDEANRVYDMIVRFANYGFPRAHAAAYGVLAFQTAYLKAHYPV 772

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TPCVDFKVGDNR----- 834
             F+A+ +T  M +  K+ ++  +AR+ +I++MPP VN      TP +     +       
Sbjct: 773  PFMASMLTAVMGSHRKVAEYVLEARRIDIEVMPPDVNESGTYFTPVMSRTAAEGSDKQAD 832

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I + LAAIK VGT    +I+E   +KPF+SL DFC RVD +  N+RV+ESL+ A
Sbjct: 833  SPAGGGIRFGLAAIKNVGTQAVENIVEIRREKPFESLLDFCRRVDLRVCNKRVIESLIQA 892

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D     R QL+  LD   + A    K R +    +F   +    D I         +
Sbjct: 893  GAFDSLQGHRSQLVAMLDETVEAAVKWRKERDDLQIQLFDFVETANWD-IEYPDIPPYTA 951

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-------KGYEESVATIRGNNIRLAAMV 1001
            S + E E+ +LG Y SGHPLD ++  L + G        +  +ES+AT+ G       MV
Sbjct: 952  SQQLEFERELLGMYLSGHPLDGFEETLTESGADRLMDLHEAEDESMATVAG-------MV 1004

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            VS +   T++G  + ++   +  +  E   FP
Sbjct: 1005 VSLKTITTKQGKSMAFMECEDQIERCEVVLFP 1036


>gi|312622501|ref|YP_004024114.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kronotskyensis
            2002]
 gi|312202968|gb|ADQ46295.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
            kronotskyensis 2002]
          Length = 1139

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/1040 (38%), Positives = 611/1040 (58%), Gaps = 44/1040 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA  ++ + +++      A+ ITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHLHTEYSLLDGACRIDRLFERVKDLNMNAVGITDHGAMYGVIDFYKTAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSI-------VLLVSTAEGYQRLIELVSRMYLL 122
            IIGC++ +            +T F   P+I       VLL    +GY+ L ++VS +  +
Sbjct: 62   IIGCEVYL----------APRTRFDKEPNIDNDIHHLVLLAMDNDGYRNLSKIVS-IGFV 110

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +      R+    L +  ++GLI LT   +G I +       +     +  +K++FG+  
Sbjct: 111  EGFYYKPRVDREVLSKY-SKGLIALTSCLAGEIPKLILREQKEKLYDAINFYKEVFGENF 169

Query: 183  YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y  LQ H     R+  +++++L+  +++PLVATN+  +L  ED   HD+L+ +     +S
Sbjct: 170  YFELQYHYIDEQRFVNNELMRLSKKYQIPLVATNDVHYLRREDRNLHDILLCIQTGKTIS 229

Query: 242  QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              +R    T + YLK+  EM  +F  +PEAL+NT+EIA +C+   +     LP+F   + 
Sbjct: 230  DSNRMEFPTDEFYLKSPEEMQQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKF---QL 286

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             + + +    L+  A+ G + R      A    A D   RL  EL VI  M F  YFLIV
Sbjct: 287  PEGKSDAFEYLKELALEGFKKRYKNDDKA----AYD---RLMMELQVIKDMGFVEYFLIV 339

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI +AK+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DI
Sbjct: 340  QDFINYAKQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDI 399

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC  RR EVI YV  KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP
Sbjct: 400  DFCYQRRQEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGVPYSQVDEIAKMIP 459

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              P   +  +A+  +   ++    +  V ++++ ++ LEG+ RHAS HAAG+VI   P++
Sbjct: 460  FSPGMTID-KALEINHELKKIYEQNDMVRKIIDTARNLEGMPRHASVHAAGVVISSCPIT 518

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+ R    D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL 
Sbjct: 519  DLVPLAR--TDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLD 576

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I ++D   Y  ++   T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I 
Sbjct: 577  RIDYNDKNVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIP 636

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            VY   KN +EKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM K
Sbjct: 637  VYIQNKNNREKIGYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAK 696

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  + + ++K+RFI GA  NGI K  A  IF ++  FA Y FNKSHAAAYA+++YQTA++
Sbjct: 697  KKADILMEEKDRFIEGAMANGIDKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYL 756

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K +Y +EF+A+ +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + L
Sbjct: 757  KKYYTIEFMASLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGL 816

Query: 840  AAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIK +G     HI++    K  F  L DF  RVD+  +N+R++E+L+ +GA D  G +R
Sbjct: 817  RAIKSLGENVIAHILKEREKKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGLNR 876

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              LL S+++I    Q  +K   N ++  F    G  ++    +      +    + E+  
Sbjct: 877  NSLLASVEDILAIKQAKKK---NANQFSFFEISGNENESFVYKNMPQPTAQELMKMEKDT 933

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK-----QQKKTRKGS 1013
            +G Y S HPL+ Y   + K  I    E       +  +   ++V       + K T+   
Sbjct: 934  IGVYISSHPLEKYTEEISKYNITPLSEISGMSEEDEYKFEQILVCGILKEVKVKLTKNNQ 993

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             + +    +     E  FFP
Sbjct: 994  TMAFAKLEDLTDSVEVLFFP 1013


>gi|329929691|ref|ZP_08283383.1| putative DNA polymerase III subunit alpha [Paenibacillus sp. HGF5]
 gi|328935954|gb|EGG32411.1| putative DNA polymerase III subunit alpha [Paenibacillus sp. HGF5]
          Length = 1242

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/1053 (38%), Positives = 625/1053 (59%), Gaps = 48/1053 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL+GA  + +++ + AA    ++A+TD   ++ A+ F +   A GI+P
Sbjct: 3    SFVHLHVHSEYSLLDGAARIGDLVREAAALGMKSLALTDHGVMYGAVPFYKACLAQGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  I      +  ++   P   +  ++LL     GY+ L++L S  +L +      
Sbjct: 63   IIGCEAYITAGSRKERGSRKDQP---IYHLILLAKNETGYRNLMKLCSIGHL-EGYHYRP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI +  L     EG+I L+    G + +         A+   L ++ +FG+  Y+ LQ H
Sbjct: 119  RIDMEALA-AHHEGIICLSACLGGEVPQHLLHGREAEAKAAALRYQAIFGEDYYLELQDH 177

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ R   Q++QL+    +PLVATN+  +L+E D E  DVL+ +     V  +DR ++
Sbjct: 178  GIPEQKRVNPQLIQLSRETGIPLVATNDVHYLTENDAEVQDVLICIGTGKTVEDEDRLQI 237

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              +  YLK+ S+M  ++  +PEA+ NT +IA +C   L+    ILP +         K+ 
Sbjct: 238  QTNQLYLKSGSDMERLYPHVPEAILNTAKIADQCRLELEFGKSILPEY---SSLPEGKDA 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ--DYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               LR+  ++GL  R  +G        Q  +  QRLD+EL VI  M FS YFLIV DFI 
Sbjct: 295  AEYLRDLCLSGLRERY-EGTERWQDEGQRSELEQRLDYELGVIESMGFSDYFLIVWDFIA 353

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A +  I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF  +
Sbjct: 354  YAHRKGIAVGPGRGSSAGSLVAYTLQITNVDPMKYKLLFERFLNPERITMPDIDIDFSDE 413

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI YV +KYG E VAQIITFG++ A+AA+RDVGRAL +P+  VD+  KLIPN    
Sbjct: 414  RRDEVIDYVVDKYGKEHVAQIITFGTMAARAAVRDVGRALNVPFGDVDKAAKLIPNHLGI 473

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+    + +E     P V  L++++ K+EG+ RHASTHAAGIVI   PL+  VP+
Sbjct: 474  SIE-RAMEQSPQLKEQYETKPKVRELIDMAMKVEGMPRHASTHAAGIVISREPLTDAVPL 532

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
             ++      +TQ++M+ +E  GL+K DFLGL+TL++++++L ++ +  G ++D   +P D
Sbjct: 533  -QEGSEKTALTQYSMENLESVGLLKMDFLGLRTLSIIERTLRWIQELTGRELDFDQVPDD 591

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY +L    T G+FQLES+G+R+ L+ ++P   EDI+++ +LYRPGP++ I  +   
Sbjct: 592  DQATYEMLGRGETAGVFQLESAGIRRVLKDLKPSVFEDIVSVNALYRPGPMEFIPKFIQA 651

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+ +    HP + P+L +T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E 
Sbjct: 652  KHGRIEPEYPHPDLIPILGDTYGIIVYQEQIMQIASTMAGFSLGEADLLRRAVSKKKREV 711

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D+++  F+SG+ K G ++  A  +++++ +FA+YGF ++HAAAY V+++QTA++K HYP
Sbjct: 712  LDRERSHFVSGSLKLGYTEDEANRVYDMIVRFANYGFPRAHAAAYGVLAFQTAYLKAHYP 771

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TPCVDFKVGDNR---- 834
            V F+A+ +T  M +  K+ ++  +AR+ +I++MPP VN      TP +     +      
Sbjct: 772  VPFMASMLTAVMGSHRKVAEYVLEARRIDIEVMPPDVNESGTYFTPVMSRSAAEGSELQA 831

Query: 835  -------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   I + LAAIK VGT    +I+E   +KPF+SL DFC RVD +  N+RV+ESL+ 
Sbjct: 832  DSPAGGGIRFGLAAIKNVGTQAVENIVEIRREKPFESLLDFCRRVDLRVCNKRVIESLIQ 891

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGA D     R QL+  LD   + A    K R +    +F   +    D I         
Sbjct: 892  AGAFDSLQGHRSQLVAMLDETVEAAVKWRKERDDLQIQLFDFVETANWD-IEYPDIPSYT 950

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-------KGYEESVATIRGNNIRLAAM 1000
            +S + E E+ +LG Y SGHPLD ++  L + G        +  +ES+AT+ G       M
Sbjct: 951  ASQQLEFERELLGMYLSGHPLDGFEETLTESGADRLMDLHEAEDESMATVAG-------M 1003

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            VVS +   T++G  + ++   +  +  E   FP
Sbjct: 1004 VVSLKTITTKQGKAMAFMECEDQIERCEVVLFP 1036


>gi|312876042|ref|ZP_07736031.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus
            6A]
 gi|311797240|gb|EFR13580.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus
            6A]
          Length = 1140

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/1041 (37%), Positives = 616/1041 (59%), Gaps = 46/1041 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA  ++ + +++      A+AITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGVMYGVIDFYKAAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSI-------VLLVSTAEGYQRLIELVSRMYLL 122
            IIGC++ +            +T F   P+I       +LL    EGY+ L ++VS +  +
Sbjct: 62   IIGCEVYL----------APRTRFDKEPNIDNDIHHLILLAMDNEGYKNLSKIVS-IGFV 110

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +      R+    L +  ++GL+ LT   +G I +       +     +  +K++FG+  
Sbjct: 111  EGFYYKPRVDREVLSKY-SKGLVALTSCLAGEIPKLILREQKEKLYDAISFYKEVFGENF 169

Query: 183  YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y  LQ H     R+  +++++L+  +++P+VATN+  +L  ED   HD+L+ +     +S
Sbjct: 170  YFELQYHYIDEQRFVNNELMRLSKKYKIPIVATNDVHYLRREDRNLHDILLCIQTGKTIS 229

Query: 242  QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              +R    T + YLK+  EM  IF  +PEAL+NT+EIA +C+   +     LP+F   + 
Sbjct: 230  DSNRMEFPTDEFYLKSPEEMQQIFGYIPEALKNTLEIAEKCNVEFEFGKINLPKF---QL 286

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             + + +    L+  A+ G + R ++   A    A D   RL  EL VI  M F  YFLIV
Sbjct: 287  PEGKSDAFEYLKELALEGFKKRYSKDDKA----AYD---RLMMELQVIKDMGFVEYFLIV 339

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI +AK+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DI
Sbjct: 340  QDFINYAKQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDI 399

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC  RR EVI YV  KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP
Sbjct: 400  DFCYQRRQEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGIPYSQVDEIAKMIP 459

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              P   +  +A+  +   ++    + +V ++++ ++ LEG+ RHAS HAAG+VI   P++
Sbjct: 460  FSPGMTID-KALEINHELKKIYEQNDTVRKIIDTARNLEGMPRHASVHAAGVVISSCPIT 518

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+ R    D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL 
Sbjct: 519  DLVPLAR--TEDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLD 576

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I ++D   Y  ++   T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I 
Sbjct: 577  RIDYNDKNVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIP 636

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            VY   KN +EKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM K
Sbjct: 637  VYIQNKNNREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAK 696

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  + + ++K+RFI GA  NG+ K  A  IF ++  FA Y FNKSHAAAYA+++YQTA++
Sbjct: 697  KKADILMEEKDRFIEGAMANGVEKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYL 756

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K +Y +EF+ + +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + L
Sbjct: 757  KKYYTIEFMTSLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGL 816

Query: 840  AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIK +G      I+ E      F  L DF  RVD+  +N+R++E+L+ +GA D  G +R
Sbjct: 817  RAIKSLGENVIAQILKEREVKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGINR 876

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              LL S+++I    Q  +K   N ++  F    G  ++    +      +    + E+  
Sbjct: 877  NSLLASVEDILVLKQAKKK---NANQFSFFEISGNENESFEYKNMPQPTAQELMKMEKDT 933

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATI------RGNNIRLAAMVVSKQQKKTRKG 1012
            +G Y S HPL+ Y   + K  +    E ++T+      +   I +  ++   + K T+  
Sbjct: 934  IGIYISSHPLERYTEEISKYNVTPLSE-ISTMSEEDEYKFEQILVCGILKEVKVKLTKNN 992

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + +    +     E  FFP
Sbjct: 993  QTMAFAKLEDLTDSVEVLFFP 1013


>gi|312109934|ref|YP_003988250.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|311215035|gb|ADP73639.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1]
          Length = 1104

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1039 (40%), Positives = 623/1039 (59%), Gaps = 67/1039 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL V S YSLL     +N+++ K    Q PA+A+TD N L+ A+ F  +    GIQP
Sbjct: 2    SFVHLHVRSCYSLLTSPAKINDLVKKAKDLQFPALALTDENVLYGAIPFYIECKRNGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG   DI ++        G+  +P    +VLL     GYQ L+++ S +    Q K   
Sbjct: 62   IIGMITDIVLE--------GEEAYP----LVLLAKNETGYQHLMKISSTI----QTKTRE 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL    + GLI LT G SG I+          A++ L  +K++FG+  Y+++QR 
Sbjct: 106  GIPEKWLWHYRS-GLIALTPGKSGQIETLLAHGEIIKAKQVLERYKQIFGENFYLSVQR- 163

Query: 190  RGYDRYRE---SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             G ++ +E    Q++ L      PLVATN+  ++ +ED   H  L+AV   TV+  +   
Sbjct: 164  -GENKRKEPYEQQLIALGEETNTPLVATNDVQYIEKEDAFVHRCLLAVKQGTVIETETA- 221

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---IEKECDDI 303
                + YL    EM   FSDLP A+EN+ +IA +C   ++  +  LP++    ++  DD 
Sbjct: 222  -AAGERYLTPPEEMTERFSDLPAAVENSGKIAEQCHLDIEFGSLKLPKYPVPTKESADDY 280

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                   LR   + GL  R+   +         YR+RL++EL+VI +M FS YFLIV DF
Sbjct: 281  -------LRRLCMEGLHERVPSPS-------DRYRERLEYELSVIRQMGFSDYFLIVWDF 326

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +A+K  I  GPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDF 
Sbjct: 327  MNFARKQGIVTGPGRGSAAGSLVAYTLYITNVDPIQYGLLFERFLNPERVSMPDIDIDFP 386

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR+EVI+YV NKYG + VAQIITFG+  AKAALRD+G+ LQ+   ++  + K +PN  
Sbjct: 387  DDRREEVIQYVANKYGQQYVAQIITFGTFGAKAALRDIGKVLQIDAKEMASILKHVPNK- 445

Query: 484  AHPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
             H +++Q   D S  FR+A  +   + R +  + K+EGL RH STHAAG++I   PLSQ+
Sbjct: 446  -HGITIQEAYDQSAAFRQAVQSSALIKRWVATAMKVEGLPRHTSTHAAGVIISSEPLSQI 504

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
            VP+ +    +L +TQ+ M  +E+ GL+K DFLGL+TLTLL+     + Q+ G  +D+  I
Sbjct: 505  VPLQQG-HGELYLTQYPMDVLERLGLLKMDFLGLRTLTLLEHICRLIRQQTGETIDVREI 563

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P  D +TY L++   T GIFQLES GM++ L+ ++P   EDI+A+ +LYRPGPID I  Y
Sbjct: 564  PLHDRKTYELVSEGDTNGIFQLESDGMKRVLKQLKPSQFEDIVAVNALYRPGPIDYIPSY 623

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK+G+EK   +HP + P+L  T GV+IYQEQ+MQIA  ++G+SL +AD+LRRA+ KK 
Sbjct: 624  IRRKHGEEKAAYLHPDLAPILAPTYGVLIYQEQIMQIAAKIAGFSLGKADLLRRAVAKKK 683

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            KE +D+Q+  FI G  + G  ++ A ++++++ +FADYGFN+SHA AY+++SYQ A++K 
Sbjct: 684  KEILDQQRNAFIKGCMEKGYDESFANDLYDMIVRFADYGFNRSHAVAYSMLSYQLAYLKA 743

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP+ F AA +T  + + EK+  +  +ARQ  I+++PPSVN     F V   +I YSLAA
Sbjct: 744  HYPLYFYAALLTSVIGDEEKVALYVYEARQKRIELLPPSVNQSRYSFSVEQGKIRYSLAA 803

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +K VG    + I++     PF    DFC R+  K +NR+ +ESLV +G  D FG  R  L
Sbjct: 804  VKHVGAAAVKAIVQERKKGPFSDFFDFCVRLFGKGINRKTIESLVLSGCFDEFGVERAAL 863

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE----NEQR 957
            L S+D   ++AQ V              E+G FSD I+L+   VE  +   E    +E+ 
Sbjct: 864  LASIDVALEHAQLVGPYV----------EEGMFSD-ISLKPKYVEAPAFSLEEKLMHEKE 912

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL--AAMVVSKQQK-KTRKGSR 1014
            +LG Y S HP   ++ + R   + G    ++ IR    RL  A + +++++K +T+KG  
Sbjct: 913  LLGVYVSPHPTSAHRKMFR---LAGARPVMSIIREKADRLVKAGVYIAQERKTRTKKGEE 969

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + ++T S+ + E +A  FP
Sbjct: 970  MSFLTISDESGEMDAVAFP 988


>gi|91202895|emb|CAJ72534.1| similar to DNA polymerase III, alpha subunit [Candidatus Kuenenia
            stuttgartiensis]
          Length = 1155

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/1049 (39%), Positives = 622/1049 (59%), Gaps = 53/1049 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL VHS YSLL+GA  + +++ K    + PA+A+TD  N++ A+EF + A +AGI+P
Sbjct: 5    NFVHLHVHSEYSLLDGACKIKDLVSKALHFKMPALALTDHGNMYGAIEFYEAAQSAGIKP 64

Query: 70   IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG +  +     L K +  GK    T+  I LL    EGY+ L++L +  YL +     
Sbjct: 65   IIGYEAYVAQGGRLDKESKNGK---ETLSHITLLAENYEGYRNLLKLSTSAYL-EGFYYK 120

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187
             RI    L+   + G+I L+G  +  I+R   F+    A    + + +LFG+   Y+ +Q
Sbjct: 121  PRIDKELLKS-HSAGIICLSGCMASEINRHLSFDRHDDAMNLAIEYLELFGENHFYLEIQ 179

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             ++        S   ++  T  +PLVATN+  +++ +D  AHD L+ +     VS + R 
Sbjct: 180  NNKIPLQEKLVSAAFKIGKTLNIPLVATNDVHYMNIDDAVAHDALLCINTGKRVSDRQRL 239

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  T + Y KN  EM ++F ++P ALENT+ IA RC   +      LP+F   E      
Sbjct: 240  RFDTNEFYFKNYQEMHALFKEIPHALENTLHIAERCDVKMDFGKLHLPKFTPPEG----- 294

Query: 306  EEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                 + NKA   L     +G I K G       +RLD EL VI +  F  YFLIV DFI
Sbjct: 295  -----ISNKAY--LRKLCEEGVIRKYGAILPHISERLDHELKVIEKTGFVEYFLIVWDFI 347

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A   NIP   GRGSGAGS+ AY L IT+IDP+   LLFERFLN +R+SMPD DIDFC 
Sbjct: 348  HYANTLNIP-ATGRGSGAGSIVAYVLNITNIDPIENDLLFERFLNAERISMPDLDIDFCA 406

Query: 425  DRRDEVIRYVQNKYGHE-RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + R+E+IRYV+ KYG +  VAQIITFG+++AKA +RDVGR L +P S+VD++ KLIPN  
Sbjct: 407  EGREEIIRYVREKYGGDSNVAQIITFGTMKAKAVIRDVGRVLDIPLSEVDKIAKLIPNTL 466

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A+  +   +    A+     L +IS+KLEGL RHAS HAAGIVI D PL++ V
Sbjct: 467  NITLE-EALEQEPALKAICQAEKQFKELFDISKKLEGLCRHASVHAAGIVISDEPLTEYV 525

Query: 544  PMYRDVRSDLPVTQF-NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLI 601
            P+ +  + D   TQ+ +   ++K GL+K DFLG++ LT+++++L  + +   ++ DL+ I
Sbjct: 526  PLAK--KGDAVTTQYYDEILVDKIGLLKADFLGVRKLTVIKRALQLIHETTREIIDLAKI 583

Query: 602  PFDDHETYHLLTTKGTLGIFQLESS-GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            P DD  TY +L++    G+FQ+E+S G ++ L+ ++PD   DI+ LV+LYRPGP+ + +V
Sbjct: 584  PVDDKATYQMLSSGNVKGVFQVETSKGFKELLKKLKPDTFADILPLVALYRPGPLQSGMV 643

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + NRK+GKE +  IHP ++ +LKET GVI+YQEQVM+IA  L+G++L+EAD LR+AMG
Sbjct: 644  DSFINRKHGKEAVEYIHPTLELILKETYGVILYQEQVMRIANRLAGFTLNEADNLRKAMG 703

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  E M K K++F++GA  N I K  A+ IFEL+  FA YGFNKSH+AAYAVI+YQTA+
Sbjct: 704  KKKPEIMAKFKDQFVNGAISNDIPKKTAIKIFELMEFFAGYGFNKSHSAAYAVITYQTAY 763

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYY 837
            +KT+YP++++ A ++ E  N EKI  + +D R+ NI+I+ P VN    DF + + N+I +
Sbjct: 764  LKTNYPLQYMTAQLSCEKQNTEKIIDYIEDCRRMNIEILKPDVNESLSDFIISEGNKIRF 823

Query: 838  SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L ++K  G      I+ A      F S+ DFC RVD + +N++V+ESLV +G+ D    
Sbjct: 824  GLGSVKNAGDKAIESIVSAREKGGKFSSILDFCKRVDLRTVNKQVIESLVKSGSFDSLSD 883

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R +LL SLD+  +    V K +      +F  + G+  D I     ++ N++   ENE 
Sbjct: 884  DRARLLASLDSAMELGSAVNKGKRKGQRALF--DIGSAMDVIETGNTAISNTTPWNENEI 941

Query: 957  R-----VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
            R      LGFYFS  PL  Y+  ++ +      E      G ++ +  ++   ++  T+K
Sbjct: 942  RQAEKESLGFYFSSSPLSEYEEKIKLLATNSSSEISELPEGTDVIIGGIITDIKKSTTKK 1001

Query: 1012 GSRIGWVT------------FSEPAKEYE 1028
            G  + ++T            FS+  KEYE
Sbjct: 1002 GDPMMYITLDDMEGAIKCIAFSKELKEYE 1030


>gi|149926718|ref|ZP_01914978.1| DNA polymerase III subunit alpha [Limnobacter sp. MED105]
 gi|149824647|gb|EDM83863.1| DNA polymerase III subunit alpha [Limnobacter sp. MED105]
          Length = 1176

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1061 (38%), Positives = 609/1061 (57%), Gaps = 60/1061 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL++H+ +S+L+G + +   +   A    PA+AI+D +NLF  ++F  KA  AG++P
Sbjct: 11   TFVHLRMHTEFSVLDGMVRVGEAVKAAAGCGMPALAISDLSNLFGLIKFYGKARGAGVKP 70

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I  C + I+   + +   +          ++LLV   +GY +L EL+SR +L +Q +   
Sbjct: 71   IAACDVWIESDRDEEQPAR----------MLLLVQNHKGYLQLCELLSRAFLRNQKRGKA 120

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +   W  E+G +GLI ++G +S  I +     +   AE     F K F  R Y+ LQR 
Sbjct: 121  TLKFEWFDEVGCDGLIAISGFASSDIGQFLLGGNMARAEDSARKFLKHFEGRYYIELQRD 180

Query: 190  RGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
                      +  QLA   +LP+VAT+   FL  ED+ AH+  + +A   ++S   RPR 
Sbjct: 181  GSTQAENLVNLSCQLAAKLQLPVVATHPIQFLKPEDFRAHEARVCIAQGEILSNPRRPRR 240

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   Y K   EM  +F+D+P A+ N++ IA+RC+  L++  P LP F   +   +    
Sbjct: 241  FTEQQYFKTAQEMAELFADIPSAIRNSIRIAQRCNLTLELGKPKLPAFPTPDGMTL---- 296

Query: 308  ENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            ++ L + +  GLE RLA        +     +Y  RL  E + I  M F GYFLIV DFI
Sbjct: 297  DDYLVHLSKEGLEKRLAHLFPSIEEREKMRPEYEARLKIECDTIIGMGFPGYFLIVQDFI 356

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             W KKN +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 357  NWGKKNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYDLLFERFLNPERVSMPDFDIDFCQ 416

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D RD VI YV+  YG + V+QI TFG+L AKA +RD GR L MPY   D L KLIP  PA
Sbjct: 417  DNRDRVIDYVKQNYGRDAVSQIATFGTLGAKAVIRDAGRVLDMPYMYCDGLSKLIPQTPA 476

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             P  L +A+AD+  FRE    +     ++ +++ LEGL R+   HA G++I    L+   
Sbjct: 477  DPWDLDRAMADEPTFRERVENEDEAKEIIAVARPLEGLTRNVGMHAGGVLIAPGKLTDFC 536

Query: 544  PMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-----DFLAQRGVKVD 597
            P+Y  D  +D  V+Q++   +E  GL+KFDFLGL+ LT+L  ++     ++  QR  +  
Sbjct: 537  PLYCADGSTDSVVSQYDKDDVEAVGLVKFDFLGLRNLTILDWAVRWVRENYEDQRDFR-- 594

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  +P DD   Y L +   T  +FQ ES   +   + ++PD  EDIIAL++L RPGP+ +
Sbjct: 595  LEDLPLDDPAVYQLFSDGNTTAVFQSESRSAKDLEKKLKPDNFEDIIALMALNRPGPLGS 654

Query: 658  IVVYN-------NRKNGKEKI-VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
             +V +         K GK +     HP ++ +LK T GVI+YQEQVM +AQ+L+GYSL  
Sbjct: 655  GMVDDFIARKKETSKTGKGRAEWYFHPKLEGILKSTYGVIVYQEQVMLVAQILAGYSLGG 714

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+E F +GA++ G+   +A  +F+L+ KFA+YGFNKSH+AAY
Sbjct: 715  ADLLRRAMGKKKPEEMAKQREIFTTGATERGVDPAVAKQLFDLMEKFAEYGFNKSHSAAY 774

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF----------NIQIMPP 819
            A+I+Y TAW+K HYP EF+AASM+ +MD+ +K+K F +DA              + ++ P
Sbjct: 775  ALIAYHTAWLKAHYPAEFMAASMSSDMDDTDKVKIFVEDAMAMCQVPGKKAGTTVTMLGP 834

Query: 820  SVNTPCVDFKV----GDNR---IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSR 871
             VN     F      G+ R   I Y L A+KG G      I+ E +A+ PF SL DF  R
Sbjct: 835  DVNESNFRFTAVRIDGEKRASAIRYGLGAVKGTGQAACEAIVAERNANGPFTSLFDFVKR 894

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            VDSK++NRRV+E+L+ AGA D     R +LL S     ++A   ++  T    ++F  + 
Sbjct: 895  VDSKQINRRVIEALIRAGAFDALNPDRAKLLASSGQAMEWAA--QQAATASQVSLFGEDL 952

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
            G  +    +E     +   + + E+  LG+YFSGH     +  +R+  +K   + ++  R
Sbjct: 953  GGDAPPELVE-VPTWSEREKLQQEKAALGYYFSGHLFKADEANVRQF-VKLRLKDLSPGR 1010

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + + +A ++ S +   T++G ++  V   +   + E + F
Sbjct: 1011 -DMVWMAGVIASLRTMMTKRG-KMAIVLLDDSTAQVELSIF 1049


>gi|308448573|ref|XP_003087689.1| hypothetical protein CRE_05365 [Caenorhabditis remanei]
 gi|308253615|gb|EFO97567.1| hypothetical protein CRE_05365 [Caenorhabditis remanei]
          Length = 1015

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1013 (39%), Positives = 594/1013 (58%), Gaps = 48/1013 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++   A+D+ PA+AITD +NL +A++F  K+   GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRIPDLIKAAASDEMPALAITDLSNLHAAVKFYNKSLGKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  + ++   N K T              LL  T +G++ L E+VSR ++  +G+Q   
Sbjct: 63   FGSVIRLN-DANHKAT--------------LLAMTNKGWRGLTEIVSRGFI--EGQQLSI 105

Query: 131  ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             C+   W+ E   + +++L  G    +         + AE  L  + + FG+R+Y+ L R
Sbjct: 106  PCVQKDWVLEQSQDIIVLL--GLHSDVGEMLCAAYPEKAEPLLEQWIEKFGNRVYLALTR 163

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +     + V+LA  + + +VA N+  F+  EDYEAH+  + +A   V+    RP+
Sbjct: 164  TGRPLEESFNEEAVKLAAKYNIGVVAHNDVHFVRPEDYEAHEARVCIADGYVLGDSKRPK 223

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P+ Y K  +EM+ +F+D+P A+ENT++IA+RC+  L++    LP +   E   I   
Sbjct: 224  HYSPEQYFKTSAEMIKLFADIPSAIENTLQIAKRCTVSLRLGFHDLPDYPIPEGHTIHSY 283

Query: 307  EEN------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             E+      E R   +  +E R    A  +    + Y +RL +EL +I +M F GYFLIV
Sbjct: 284  FEHLSEIGLEERLDFLYPVETRDEDWAEIR----KPYDERLAYELGIINKMDFPGYFLIV 339

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFDI
Sbjct: 340  MDFIQWSKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDI 399

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC   RD+VI YV   YG + V+QI TFG++ AK A+RDV R L   Y   DR+ K+IP
Sbjct: 400  DFCIAGRDKVIDYVARHYGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMIP 459

Query: 481  NDPAHPVSLQAIADDSRFRE--ARLADPSVD---RLLEISQKLEGLYRHASTHAAGIVIG 535
              P      ++I  + + ++     ++P  D    + E++ KLEG+ R+   HA G+VI 
Sbjct: 460  TKPLGLTLEESIEAEPQLKDIVTNPSNPDYDDAAEIWEMALKLEGITRNTGKHAGGVVIA 519

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--- 592
               ++    +  +      V QF+   +E AGL+KFDFLGL+ LT+++ ++  + +R   
Sbjct: 520  PTKITDYSAILCEADGTGRVAQFDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKRIQS 579

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +++S IP DD ++Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRP
Sbjct: 580  DKPLNISNIPLDDPKSYAVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRP 639

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP+D I  + +R +G E    +HPL++ +L+ T G+++YQEQVMQ AQ  +GY+L  AD+
Sbjct: 640  GPMDLIPDFIHRMHGGE-FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADL 698

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  EEM KQ+  FI GA+K  I +  A +IF+ + KFA YGFNKSHAAAYA++
Sbjct: 699  LRRAMGKKKVEEMVKQRATFIEGAAKKDIDEGTANHIFDYMEKFAGYGFNKSHAAAYALV 758

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTAW+K HYP EF+AA M+ EM N + I     D R  N+ ++PPSVN     F   D
Sbjct: 759  AYQTAWLKAHYPSEFMAAVMSSEMQNTDNIVFLIDDCRINNLVVLPPSVNMSFYQFYASD 818

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             N I Y L AIKGVG    + ++++   D PF  L DFC RVD KK+N+R LE+L+ AGA
Sbjct: 819  VNTIIYGLGAIKGVGEQAMQSVIDSREQDGPFKDLFDFCHRVDLKKINKRTLEALIRAGA 878

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSS 949
            LDC G  R  L+  L    + A+    NR     ++F   E+        ++ +S E   
Sbjct: 879  LDCLGIERSSLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEVQRKPAKPVKPWSDE--- 935

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            VR + E+  LG Y +GHP+DVY+  L+        E   T RG     A +VV
Sbjct: 936  VRLKGEKDTLGLYLTGHPIDVYRADLKSFIPNKINELTLTRRGVTTVFAGLVV 988


>gi|315648837|ref|ZP_07901932.1| DNA polymerase III, alpha subunit [Paenibacillus vortex V453]
 gi|315275805|gb|EFU39157.1| DNA polymerase III, alpha subunit [Paenibacillus vortex V453]
          Length = 1143

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/1055 (38%), Positives = 624/1055 (59%), Gaps = 52/1055 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL+GA  + +++ + AA    ++A+TD   ++ A+ F +   A GI+P
Sbjct: 3    SFVHLHVHSEYSLLDGAARIGDLVREAAALGMKSLALTDHGVMYGAIPFYKACLAQGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  I      +  ++   P   +  ++LL     GY+ L++L S +  L+      
Sbjct: 63   IIGCEAYITAGSRKERGSRKDQP---IYHLILLAKNEVGYRNLMKL-SSIGHLEGYHYRP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI +  L     EG+I L+    G + +         A+   L ++ +FGD  Y+ LQ H
Sbjct: 119  RIDMEALA-AHHEGIICLSACLGGEVPQHLLHGREAEAKAAALRYQAIFGDDYYLELQDH 177

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ R   Q++ L+    +PLVATN+  +L+EED E  DVL+ +     V  +DR ++
Sbjct: 178  GIPEQKRVNPQLIALSRETGIPLVATNDVHYLTEEDAEVQDVLICIGTGKTVEDEDRLQI 237

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              +  YLK+ SEM  ++  +PEA++NT +IA +C+  L+    ILP +         K  
Sbjct: 238  QTNQLYLKSGSEMERLYPHVPEAIQNTAKIADQCNLELEFGKSILPEY---SSLPEGKNA 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYR----QRLDFELNVIARMKFSGYFLIVADF 363
               LR   + GL+ R     I + +  +  R    QRL++EL VI  M FS YFLIV DF
Sbjct: 295  AEYLRELCLNGLQERYG---ITERWQDEALRSELEQRLNYELGVIENMGFSDYFLIVWDF 351

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I +A +  I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF 
Sbjct: 352  IAYAHRQGIAVGPGRGSSAGSLVAYTLQITNVDPMKYKLLFERFLNPERITMPDIDIDFS 411

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RRDEVI YV +KYG E VAQIITFG++ A+AA+RDVGRAL +P+  VD+  KLIPN  
Sbjct: 412  DERRDEVIDYVVDKYGKEHVAQIITFGTMAARAAVRDVGRALNVPFGDVDKAAKLIPNHL 471

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A+    + +E     P V  L++++ K+EG+ RHASTHAAGIVI   PL+  V
Sbjct: 472  GISIA-KAMEQSPQLKEQYETRPKVRELIDMAMKVEGMPRHASTHAAGIVISRDPLTDAV 530

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+ ++      +TQ++M+ +E  GL+K DFLGL+TL++++++L ++ +  G  +D   IP
Sbjct: 531  PL-QEGSEKTALTQYSMENLESVGLLKMDFLGLRTLSIIERTLKWIQELTGGALDFEQIP 589

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D  TY +L    T G+FQLES+G+R+ L+ ++P   EDI+++V+LYRPGP++ I  + 
Sbjct: 590  DNDGNTYEMLGRGETTGVFQLESAGVRRVLKDLKPSAFEDIVSVVALYRPGPMEFIPRFI 649

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K+G+      H  + P+L +T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +
Sbjct: 650  QVKHGQIDPEYPHEDLIPILGDTYGIIVYQEQIMQIASTMAGFSLGEADLLRRAVSKKKR 709

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E +D+++  F+SG+ K G S+  A  +++++ +FA+YGF ++HAAAY V+++QTA++K H
Sbjct: 710  EVLDRERSHFVSGSLKLGYSEDEANRVYDMIVRFANYGFPRAHAAAYGVLAFQTAYLKAH 769

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TPCV---------- 826
            YPV F+A+ +T  M +  K+ ++  +AR+ +I++MPP VN      TP V          
Sbjct: 770  YPVPFMASMLTAVMGSHRKVAEYVLEARRIDIEVMPPDVNESGTYFTPVVSQSESGSLDE 829

Query: 827  -DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                  +  I + LAAIK VGT    +I+E   +KPF+SL DFC RVD +  N+RV+ESL
Sbjct: 830  GSHHFTEGGIRFGLAAIKNVGTQAVENIVEIRREKPFESLLDFCRRVDLRVCNKRVIESL 889

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + AGA D     R QL+  LD   + A    K R +    +F   + T  D I       
Sbjct: 890  IQAGAFDSLPGHRSQLVAMLDETVEAAVKWRKERDDLQIQLFDFVEATNWD-IEYPDIPP 948

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-------KGYEESVATIRGNNIRLA 998
              +  + E E+ +LG Y SGHPLD Y+  L + G        +  +ES+A +       A
Sbjct: 949  YTAGQQLEFERELLGMYLSGHPLDGYEDTLTESGADRLMDLHEAADESMAAV-------A 1001

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             MVV+ +   T++G  + ++   +  +  E   FP
Sbjct: 1002 GMVVTLKTITTKQGKAMAFMECEDQIERCEVVLFP 1036


>gi|312135078|ref|YP_004002416.1| DNA polymerase III subunit alpha [Caldicellulosiruptor owensensis OL]
 gi|311775129|gb|ADQ04616.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor owensensis
            OL]
          Length = 1140

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/1042 (37%), Positives = 622/1042 (59%), Gaps = 48/1042 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA  ++ + +++      A+AITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGAMYGVIDFYKAAKENGIKP 61

Query: 70   IIGCQLDI------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            IIGC++ +      D + N+            +  +VLL    +GY+ L  +VS +  ++
Sbjct: 62   IIGCEVYLAPRTRFDKEANID---------SDIHHLVLLAMDNDGYRNLSRIVS-IGFVE 111

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  R+    L +  ++GL+ LT   +G I +       +     +  +K++FG+  Y
Sbjct: 112  GFYYKPRVDREVLSKY-SKGLVALTSCLAGEIPKFILREQKEKLYDAISFYKEVFGENFY 170

Query: 184  VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
              LQ H     R+  +++++L+  +++PLVATN+  +L  ED   HD+L+ +     +S 
Sbjct: 171  FELQNHYIDEQRFVNNELIRLSKKYQVPLVATNDVHYLKREDRNLHDILLCIQTGKTISD 230

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             +R    T + YLK+  EM  +F  +PEAL+NT+EIA +C+   +     LP+F   E  
Sbjct: 231  SNRMEFPTDEFYLKSPEEMHQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEGK 290

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +   E   EL   A  G + R ++   A    A D   RL  EL VI  M F  YFLIV 
Sbjct: 291  NDPFEYLKEL---AFEGFKKRYSKDDKA----AYD---RLMMELQVIKDMGFVEYFLIVQ 340

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI +AK+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DID
Sbjct: 341  DFINYAKQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDID 400

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC  RR EVI YV  KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP 
Sbjct: 401  FCYQRRQEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGIPYSQVDEIAKMIPF 460

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   +  +A+  +   ++    + +V ++++ ++ LEG+ RHAS HAAG+VI + P++ 
Sbjct: 461  SPGMTID-KALEINHELKKIYEQNDTVRKIIDTARNLEGMPRHASVHAAGVVISNCPITD 519

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            LVP+ R    D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL  
Sbjct: 520  LVPLAR--TDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDR 577

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            I ++D   Y  ++   T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I V
Sbjct: 578  IDYNDKNVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPV 637

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y   KN +EKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM KK
Sbjct: 638  YIQNKNNREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKK 697

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              + + ++++RFI GA  NG+++  A  IF ++  FA Y FNKSHAAAYA+++YQTA++K
Sbjct: 698  KADILMEERDRFIEGAVANGVNRETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYLK 757

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +Y +EF+ + +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + L 
Sbjct: 758  KYYTIEFMTSLITSVMNSNEKVGMYIEECRRFGISILPPDINKSSYDFTIEGNSIRFGLR 817

Query: 841  AIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AIK +G     HI+    +K  F  L DF  RVD+  +N+R++E+L+ +GA D  G +R 
Sbjct: 818  AIKSLGENVIAHILSEREEKGTFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGINRN 877

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR--FENEQR 957
             LL S+++I      V K    K+ N F+  + + ++  + E  S+   + +   + E+ 
Sbjct: 878  SLLASVEDI-----LVLKQAKKKNANQFSFFEISGNENESFEYKSLPQPTAQELMKMEKD 932

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------RGNNIRLAAMVVSKQQKKTRK 1011
             +G Y S HPL+ Y   + +  +    E ++T+      +   I +  ++   + K T+ 
Sbjct: 933  SIGIYISSHPLERYTEEISRYNVTPLSE-ISTMSEEDEYKFEQILVCGILKEVKVKLTKN 991

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
               + +    +     E  FFP
Sbjct: 992  NQTMAFGKLEDLTDSVEVLFFP 1013


>gi|15677663|ref|NP_274824.1| DNA polymerase III, alpha subunit [Neisseria meningitidis MC58]
 gi|14194679|sp|Q9JXZ2|DPO3A_NEIMB RecName: Full=DNA polymerase III subunit alpha
 gi|7227081|gb|AAF42162.1| DNA polymerase III, alpha subunit [Neisseria meningitidis MC58]
 gi|316984432|gb|EFV63405.1| DNA polymerase III subunit alpha [Neisseria meningitidis H44/76]
 gi|325139647|gb|EGC62186.1| DNA polymerase III, alpha subunit [Neisseria meningitidis CU385]
 gi|325200888|gb|ADY96343.1| DNA polymerase III, alpha subunit [Neisseria meningitidis H44/76]
          Length = 1144

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/1045 (38%), Positives = 594/1045 (56%), Gaps = 62/1045 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   D          PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVRIGNPD------APDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARTAALKYAAWFPDAFYMELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q       +     +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DYLIKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KL
Sbjct: 407  DVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466

Query: 479  IPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   P+SL+ A+  + + +E   A+   D L+ +++KLE L R    HA G++I   
Sbjct: 467  IPLEANKPLSLEKAMETEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K  
Sbjct: 526  KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYR
Sbjct: 581  TGDIIDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+DNI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD
Sbjct: 641  PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+
Sbjct: 700  LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-V 830
            ISYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F   
Sbjct: 760  ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D +I Y+L AIKG G      I  A  +   F  L DFC RV  + +NRR LE+L+  G
Sbjct: 820  PDMKIRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943
            A D    +R  LL ++D           N   K  N  A++ G F       + + L   
Sbjct: 880  AFDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDA 930

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
             + + S +   E+ V+GFY SGHP   Y   +R++     +        +++RLA  V +
Sbjct: 931  PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIAPTKLDRLKPQ---DSVRLAGFVTA 987

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYE 1028
             +    ++G +I +V+  + + + E
Sbjct: 988  VRTMMGKRG-KIAFVSLEDLSGQVE 1011


>gi|261393166|emb|CAX50778.1| DNA polymerase III alpha subunit [Neisseria meningitidis 8013]
          Length = 1144

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/1040 (38%), Positives = 593/1040 (57%), Gaps = 52/1040 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   D          PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVRIGNPD------APDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAVALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  TP  +      M   FSDLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPSQFFIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q       +     +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DYLVKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++  D+L KL
Sbjct: 407  DVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKL 466

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   P+ L  A+  + + +E   A+   D L+ +++KLE L R    HA G++I   
Sbjct: 467  IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K  
Sbjct: 526  KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYR
Sbjct: 581  TGDIVDVGTIPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+DNI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD
Sbjct: 641  PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+
Sbjct: 700  LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-V 830
            ISYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F   
Sbjct: 760  ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D +I Y+L AIKG G      I  A  +   F  L DFC RV  + +NRR LE+L+  G
Sbjct: 820  PDMKIRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A D    +R  LL ++D     A   +K        +F   +    + + L    + + S
Sbjct: 880  AFDSIEPNRAMLLANIDLAMNNAD--QKAANTNQGGLFDMMEDAI-EPVRLIDAPMWSES 936

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQKK 1008
             +   E+ V+GFY SGHP   Y   +R++        +  ++  +++RLA  V + +   
Sbjct: 937  EKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVTAVRTMM 992

Query: 1009 TRKGSRIGWVTFSEPAKEYE 1028
             ++G +I +V+  + + + E
Sbjct: 993  GKRG-KIAFVSLEDLSGQVE 1011


>gi|30249925|ref|NP_841995.1| dnaE1; DNA polymerase III (alpha chain) protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30139032|emb|CAD85889.1| dnaE1; DNA polymerase III (alpha chain) protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 1169

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/1000 (41%), Positives = 590/1000 (59%), Gaps = 67/1000 (6%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P F+HL++HS YS+++G + +   + K      PA+A+TD +NLF  ++F Q A  AGI+
Sbjct: 5   PVFIHLRLHSEYSVVDGIVRVEEAVAKARDVGMPALALTDLSNLFGLVKFYQCAFKAGIK 64

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PI GC + +  +      N    PF     ++LL  +  GY  L  L+SR Y  +  +  
Sbjct: 65  PIAGCDVWVTNE------NDADRPF----RLLLLCQSFSGYLLLSRLLSRAYRENMCRGR 114

Query: 129 VRICLSWLQE--IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             +  SW +E   GTEGLI L+GG  G +++         A      +  LF  R Y+ +
Sbjct: 115 AELKKSWFREEDAGTEGLIALSGGGQGEVEQ-LLLADPPAAVTAAQQWADLFPGRFYLEI 173

Query: 187 QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           QR  R  +      ++ LA + +LP+VAT+   F+  ED+ AH+  + +A   V+  + R
Sbjct: 174 QRCGRPNEETSGYALLDLASSLKLPVVATHPVQFMRPEDFRAHEARVCIAQGYVLGDRRR 233

Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
           P+  T   Y K  +EM  +F D+PEAL N+VEIARRCS +L++    LP F       + 
Sbjct: 234 PKEFTGQQYFKTPAEMGELFRDVPEALANSVEIARRCSLMLELGVNRLPDFPTPAGISV- 292

Query: 305 KEEENELRNKAVAGLEVRLAQG---AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              E  LR  A  GLE RL Q     + +      Y+ RLDFE+  I +M F+GYFLIVA
Sbjct: 293 ---EQHLRELAQTGLEARLLQSFPQVLQRDERRPIYQMRLDFEVETIIQMGFAGYFLIVA 349

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFI WAK++++PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFDID
Sbjct: 350 DFIGWAKQHDVPVGPGRGSGAGSLVAYSLGITDLDPLLYDLLFERFLNPERVSMPDFDID 409

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FCQDRR++VI YV+++YG E VAQI TFG++ AKA +RDVGR L +PY+ VD+L KL+P 
Sbjct: 410 FCQDRREQVIEYVRDRYGAESVAQIATFGTMAAKAVVRDVGRVLDLPYNFVDQLAKLVPF 469

Query: 482 DPAHPVSLQAIADDSRFREARLADP----------SVDRLLEISQKLEGLYRHASTHAAG 531
           +    +           R+AR  +P           V  LLE++++LEGL R+   HA G
Sbjct: 470 ELGMTL-----------RKAREIEPLLNQRAEEEEDVRNLLELAERLEGLTRNVGMHAGG 518

Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL----- 586
           ++I    ++   P+Y     D  V+Q++   +EK GL+KFDFLGL+TLT+L +++     
Sbjct: 519 VLIAPGKITDFCPVYCADSGDAVVSQYDKDDVEKVGLVKFDFLGLRTLTILDRAVADIRQ 578

Query: 587 -------------DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
                        D  +       L  I  +D  T+ L+    T+GIFQ ES GM+  L+
Sbjct: 579 YRAASPGSAVAEPDVQSAEESHFSLESISLEDAATFSLMAKGNTVGIFQFESRGMKDLLQ 638

Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
             +PD  ED+IALV+LYRPGP+D I  +  RK+GK ++  + P + P+L  T G++IYQE
Sbjct: 639 RARPDRFEDLIALVALYRPGPMDLIPDFIERKHGK-RVDYLDPRLQPILGPTYGIMIYQE 697

Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
           QVMQIAQ++ GYSL  AD+LRRAMGKK  EEM +Q+  F+ GA +N +++  AV +F L+
Sbjct: 698 QVMQIAQVIGGYSLGGADLLRRAMGKKKVEEMAQQRAVFVEGAIRNEMAEADAVTLFGLM 757

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
            KFA YGFNKSHAAAYA+I+YQTA++KTHYP EF+AA M+ +MD+ +K+  F +D +   
Sbjct: 758 EKFAGYGFNKSHAAAYALIAYQTAYLKTHYPAEFMAACMSSDMDDTDKVNVFYEDCKLNG 817

Query: 814 IQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871
           I I+PP +N     F   D++ I Y L A+KG G      I++       F  L DFC R
Sbjct: 818 IVILPPDINESGYYFVPVDHKTIRYGLGAVKGSGEAAISAIVQVREQGSTFTGLFDFCRR 877

Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
           VD + +NRR +E+L+ AGA D    +R  LL+S+ N  +YA+  + +      ++F  E 
Sbjct: 878 VDRRIVNRRTIEALIRAGAFDSVETNRAALLESVGNAMEYAE--QCSLAASQVSLF-DEN 934

Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
                   +   +      + +NE+  LGFY SGHP D Y
Sbjct: 935 TDLIQPPAITGVAQWPEREKLQNEKMALGFYLSGHPYDSY 974


>gi|148244870|ref|YP_001219564.1| DNA polymerase III alpha subunit [Candidatus Vesicomyosocius okutanii
            HA]
 gi|146326697|dbj|BAF61840.1| DNA polymerase III alpha subunit [Candidatus Vesicomyosocius okutanii
            HA]
          Length = 1141

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/1046 (37%), Positives = 629/1046 (60%), Gaps = 53/1046 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL   S +S+    + ++  ++K+      +IA+TD +NLF+A++F QKA AA I
Sbjct: 3    NPGFVHLHCQSEFSVENSVVRISKFIEKVQEIGMDSIALTDESNLFAAVKFYQKATAANI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G +++I  ++              + S +LL    +GY  L EL+S  Y   QG+ 
Sbjct: 63   KPIFGARINIKDKEG------------ELYSGLLLCQDHQGYLNLSELISLSY--TQGRS 108

Query: 128  SVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              R+ ++  + I   +GLIM+       + +    N    A+++   ++ +F DR Y+ +
Sbjct: 109  CERVSITQQELIDYNQGLIMIATPIYSDVAKYLISNKIVKAKQKSEFWQAIFVDRYYLGV 168

Query: 187  QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR  R +D       ++LA    + +VATN+  FL+E D++AH+  + ++  +++    R
Sbjct: 169  QRTSRKFDEKHLHLCIKLALELGIAVVATNDVQFLNESDFDAHEARICISQGSLLDDTQR 228

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP-ILPRFIEKECDDI 303
             R  +   +LK+  +M  +FSDLPE LENT+E+A+RC+   ++     LP F   E   I
Sbjct: 229  KRHFSNQQFLKSPKQMYKLFSDLPEILENTLELAKRCNVHFELFKKNYLPDFPIPEHLTI 288

Query: 304  QK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            ++   EE+E       GL  RL    +        Y+QRL FEL++I +M FSGYFLIVA
Sbjct: 289  EQFFSEESE------GGLVQRLKNLKV----DVNIYQQRLKFELDIIIQMGFSGYFLIVA 338

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+W+K+N+IPVGPGRGSGAGS+ AY L IT++DP++  LLFERFLNP+R+SMPD DID
Sbjct: 339  DFIKWSKENDIPVGPGRGSGAGSLVAYVLGITNVDPIKHELLFERFLNPERVSMPDLDID 398

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI YV  +YGHE+V+QIIT+G++ AK  +RDVGR L  PY   D++ K+IPN
Sbjct: 399  FCTDRRDEVIGYVAKRYGHEKVSQIITYGTMAAKGVVRDVGRVLGHPYGFSDQISKMIPN 458

Query: 482  DPAHPVSLQAIADDSR-----FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            D    +  +A+++  +      R    ++ SV  L+++S++LEGL R+  THA G+VI  
Sbjct: 459  DLRATLE-KALSEPEKGGSKELRARYDSEESVTALIDLSKQLEGLVRNVGTHAGGVVIAP 517

Query: 537  RPLSQLVPMYRDV-RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
              +S   P+Y+    ++  V+QF+   +E  GL+KFDFLGL  LT++ K++  ++ +G+ 
Sbjct: 518  SKISDFCPVYKGYGENNSVVSQFDKDDVEAVGLVKFDFLGLSNLTVIHKAIKLISVKGLS 577

Query: 596  ---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               ++L  +P DD   Y LL +  T G+FQLES GMR  L+ +Q D  EDI+A+++LYRP
Sbjct: 578  DEPINLDALPLDDKRVYKLLQSCDTTGVFQLESKGMRSYLKKLQADNFEDIVAMLALYRP 637

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+D  +V  Y N K+G + +   HP+++ +LK T GV +YQEQVM+ AQ+++GYSL  A
Sbjct: 638  GPLDAGMVDDYINVKHGAQ-VKYPHPMLEQILKPTNGVFLYQEQVMKSAQVMAGYSLGGA 696

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK   EM++Q+  F+ GA++ GI++  A  IF+L+ KF+ YGFNKSH+ AYA
Sbjct: 697  DLLRRAMGKKKASEMNRQRSVFVKGAAERGINEKKANEIFDLIDKFSGYGFNKSHSVAYA 756

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             +SY TAW+K+HYP  F+AA ++  MD+ +++     + RQ  + +  P+V     +F +
Sbjct: 757  YVSYHTAWLKSHYPAPFMAAVLSGVMDDTDRVSFTISEIRQMGLIVNGPNVCESNYEFSI 816

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D N + Y L AIKGVG      ++ E S +  +  L +FCSR++ + LN+R +E+L+++
Sbjct: 817  LDKNTVLYGLGAIKGVGVALVDAVVFERSTNGTYKDLFEFCSRIEKRYLNKRAIEALIYS 876

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE-KFSVEN 947
            GA D  G +R  L+++     + A+  + +  +    +F+H +  +  +  L   FS + 
Sbjct: 877  GAFDILGVNRESLIKTYPIAIRQAEQKQSDYFSGQNGLFSHNE--YETRYLLAPSFSFKK 934

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPI-LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               R + E+ VLG+YF  HP + Y    L+ + +     ++   +  ++R+ A++   + 
Sbjct: 935  ---RLQLEKSVLGYYFDNHPTNEYTVADLKNINVV-LPSNIVFRKNRDVRVLALISDLRY 990

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  + G RI  +T  + +    A  F
Sbjct: 991  RSIKNGERIALITIEDGSASLNAVVF 1016


>gi|295399508|ref|ZP_06809490.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
            C56-YS93]
 gi|294978974|gb|EFG54570.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
            C56-YS93]
          Length = 1104

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1039 (40%), Positives = 623/1039 (59%), Gaps = 67/1039 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL V S YSLL     +++++ K    Q PA+A+TD N L+ A+ F  +    GIQP
Sbjct: 2    SFVHLHVRSCYSLLTSPAKISDLVKKAKDLQFPALALTDENVLYGAIPFYIECKRNGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG   DI ++        G+  +P    +VLL     GYQ L+++ S +    Q K   
Sbjct: 62   IIGMITDIVLE--------GEEAYP----LVLLAKNETGYQHLMKISSTI----QTKTRE 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL    + GLI LT G SG I+          A++ L  +K++FG+  Y+++QR 
Sbjct: 106  GIPEKWLWHYRS-GLIALTPGKSGQIETLLAHGEIIKAKQVLERYKQIFGENFYLSVQR- 163

Query: 190  RGYDRYRE---SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             G ++ +E    Q++ L      PLVATN+  ++ +ED   H  L+AV   TV+  +   
Sbjct: 164  -GENKRKEPYEQQLIALGEETNTPLVATNDVQYIEKEDAFVHRCLLAVKQGTVIETETA- 221

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---IEKECDDI 303
                + YL    EM   FSDLP A+EN+ +IA +C   ++  +  LP++    ++  DD 
Sbjct: 222  -AAGERYLTPPEEMTERFSDLPAAVENSGKIAEQCHLDIEFGSLKLPKYPVPTKESADDY 280

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                   LR   + GL  R+   +         YR+RL++EL+VI +M FS YFLIV DF
Sbjct: 281  -------LRRLCMEGLHERVPSPS-------DRYRERLEYELSVIRQMGFSDYFLIVWDF 326

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +A+K  I  GPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDF 
Sbjct: 327  MNFARKQGIVTGPGRGSAAGSLVAYTLYITNVDPIQYGLLFERFLNPERVSMPDIDIDFP 386

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR+EVI+YV NKYG + VAQIITFG+  AKAALRD+G+ LQ+   ++  + K +PN  
Sbjct: 387  DDRREEVIQYVANKYGQQYVAQIITFGTFGAKAALRDIGKVLQIDAKEMASILKHVPNK- 445

Query: 484  AHPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
             H +++Q   D S  FR+A  +   + R +  + K+EGL RH STHAAG++I   PLSQ+
Sbjct: 446  -HGITIQEAYDQSAAFRQAVQSSALIKRWVATAMKVEGLPRHTSTHAAGVIISSEPLSQI 504

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
            VP+ +    +L +TQ+ M  +E+ GL+K DFLGL+TLTLL+     + Q+ G  +D+  I
Sbjct: 505  VPLQQG-HGELYLTQYPMDVLERLGLLKMDFLGLRTLTLLEHICRLIRQQTGEMIDVREI 563

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P  D +TY L++   T GIFQLES GM++ L+ ++P   EDI+A+ +LYRPGPID I  Y
Sbjct: 564  PLHDRKTYELVSEGDTNGIFQLESDGMKRVLKQLKPSQFEDIVAVNALYRPGPIDYIPSY 623

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK+G+EK   +HP + P+L  T GV+IYQEQ+MQIA  ++G+SL +AD+LRRA+ KK 
Sbjct: 624  IRRKHGEEKAAYLHPDLAPILAPTYGVLIYQEQIMQIAAKIAGFSLGKADLLRRAVAKKK 683

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            KE +D+Q+  FI G  + G  ++ A ++++++ +FADYGFN+SHA AY+++SYQ A++K 
Sbjct: 684  KEILDQQRNAFIKGCMEKGYDESFANDLYDMIVRFADYGFNRSHAVAYSMLSYQLAYLKA 743

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP+ F AA +T  + + EK+  +  +ARQ  I+++PPSVN     F V   +I YSLAA
Sbjct: 744  HYPLYFYAALLTSVIGDEEKVALYVYEARQKRIELLPPSVNQSRYSFSVEQGKIRYSLAA 803

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +K VG    + I++     PF    DFC R+  K +NR+ +ESLV +G  D FG  R  L
Sbjct: 804  VKHVGAAAVKAIVQERKKGPFSDFFDFCVRLFGKGINRKTIESLVLSGCFDEFGVERAAL 863

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE----NEQR 957
            L S+D   ++AQ V              E+G FSD I+L+   VE  +   E    +E+ 
Sbjct: 864  LASIDVALEHAQLVGPYV----------EEGMFSD-ISLKPKYVEAPAFSLEEKLMHEKE 912

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL--AAMVVSKQQK-KTRKGSR 1014
            +LG Y S HP   ++ + R   + G    ++ IR    RL  A + +++++K +T+KG  
Sbjct: 913  LLGVYVSPHPTSAHRKMFR---LAGARPVMSIIREKADRLVKAGVYIAQERKTRTKKGEE 969

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + ++T S+ + E +A  FP
Sbjct: 970  MSFLTISDESGEMDAVAFP 988


>gi|119953364|ref|YP_945573.1| DNA polymerase III subunit alpha [Borrelia turicatae 91E135]
 gi|119862135|gb|AAX17903.1| DNA polymerase III alpha subunit [Borrelia turicatae 91E135]
          Length = 1150

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1026 (40%), Positives = 608/1026 (59%), Gaps = 47/1026 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+GA  + +I+ K        IA+TD  NLF A++F ++A  AGI+PI
Sbjct: 7    FVHLHVHSDYSLLDGAAKITDIVAKAKKCNMSHIALTDHGNLFGAMKFYREAKGAGIKPI 66

Query: 71   IGCQLDID-MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IG +  +     ++K  ++   P+     ++ L     GY+ L++L S  YL +      
Sbjct: 67   IGMEAYMSSTSKHIKKNDELGRPYY---HLIFLAKNELGYKNLLKLTSVSYL-EGFYYRP 122

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    +++  +EGLI  +    G I +    N    A+  +L FK +FGD  Y+ LQRH
Sbjct: 123  RIDKEDIEKY-SEGLICTSACIGGIIPQLILANKFDDAKNEILWFKSVFGDDFYLELQRH 181

Query: 190  --RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              +  D   E  V   AY+ EL   L  +N+S ++++ED  A D+++ +      S  +R
Sbjct: 182  GIKQQDIVNEKLV---AYSRELNVSLSVSNDSHYVNKEDATAQDIIVCIGTGAKRSDPNR 238

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECDD 302
             ++  D  YLK + EM  +F DLPEAL NT++IA +C+ F ++   PI P + +  E D 
Sbjct: 239  LKMETDEFYLKTQEEMCKLFRDLPEALANTLKIAEKCNEFEIKFPGPIFPEYQVPSEFDT 298

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            + +     L    + GL+ R A             + R  +EL+ I +M F  YFLIV D
Sbjct: 299  LSQY----LEYLTLEGLKFRYANVT-------DSIKDRAFYELSTIIKMGFEAYFLIVWD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI++A  N IPVGPGRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDIDF
Sbjct: 348  FIKFAHDNGIPVGPGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERVSMPDFDIDF 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RDEVI+YV  KYG ++VAQIITFG+L+ KA  +DVGR L +P+++ + L KLIP+ 
Sbjct: 408  CFEGRDEVIKYVTRKYGEDKVAQIITFGTLKPKAVFKDVGRVLDIPFTESNELTKLIPDG 467

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   VSL+ +  D   +         + L+E +  LEG+ R+ STHAAGIVI   PL+  
Sbjct: 468  PK--VSLREVFKDKALKAYLNKGVVYNELMEAALVLEGMNRYVSTHAAGIVIARTPLTDY 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+Y+D + +   TQ+ M  +E  GL+K DFLGLKTLTL++ + + +        ++ I 
Sbjct: 526  VPLYKDYKQNTVSTQYTMDLLEDCGLVKMDFLGLKTLTLIKNAENLIRITNPNFSIANIS 585

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
              D +T+ +L+   +  +FQ ES GM+Q L   +PD IED+IAL +LYRPGP+  I  + 
Sbjct: 586  DSDVKTFKMLSEGRSASVFQFESEGMQQVLREAKPDSIEDLIALNALYRPGPMQFIPQFI 645

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K G ++I   HP +  +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK +
Sbjct: 646  AAKTGTKRIRYPHPDLKEVLKPTYGVIVYQEQVMEVARIIGGFSLGKADILRRAMGKKKE 705

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            +EM+K K  FI GA   G  +T+A +IFELL  FA YGFNKSHAAAY++I+YQTA++K +
Sbjct: 706  DEMNKMKVDFIKGALSKGYDETLANDIFELLKPFAGYGFNKSHAAAYSLIAYQTAYLKAN 765

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP  F+AA++T E++N EK+  + ++A+   I ++ P +N    +F V    I Y L  I
Sbjct: 766  YPENFMAANLTNEINNTEKLSYYIEEAKSMGINVLKPDINQSFKEFSVVGLNISYGLNGI 825

Query: 843  KGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K +G      I+ E   +  + S EDF  RVD K +N++ LE+ + +G  D  G +R  L
Sbjct: 826  KNIGGLIVDLIITERQENGEYKSFEDFIRRVDDKVINKKFLEAAIKSGLFDSLGQNRKTL 885

Query: 902  LQSLDNIQKYAQWVEKNRTNKH--ENIFAHEKGTFSDKI-------TLEKFSVENSSVRF 952
             ++LD   K   +V K+R +K   +N      G+  D I         E++S     +RF
Sbjct: 886  FENLD---KLIDFVIKDRNDKKLGQNSLFGSIGS-QDAIQQSFNYHVFEEYSYP-ELLRF 940

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA-AMVVSKQQKKTRK 1011
            E E  +LGFY SGHPLD YKP L +       E +A  +   ++ A ++ V +  +  R 
Sbjct: 941  ERE--LLGFYVSGHPLDHYKPELERFTNFNVLEDLAVKKDTTVKFAGSLNVVRVIRTKRN 998

Query: 1012 GSRIGW 1017
             +R+ +
Sbjct: 999  NARMAF 1004


>gi|325475361|gb|EGC78546.1| DNA polymerase III [Treponema denticola F0402]
          Length = 1149

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/1038 (39%), Positives = 594/1038 (57%), Gaps = 32/1038 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS +SLL+GA S+  +  K     Q A+A+TD  N+F A+ F        I+PI
Sbjct: 5    FVHLHVHSDFSLLDGAASVKALAAKAEKLGQTALALTDHGNMFGAINFYNACKEKNIKPI 64

Query: 71   IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IGC+  +  +     K T  GK  +     ++LL     GY+ L+ L S+ Y  +     
Sbjct: 65   IGCEFYVAPESRFEKKETPGGKKYY----HLILLAKNETGYRNLMVLCSKGYT-EGMYYK 119

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             RI    L +   EGLI L+   +G +         + AE  +  ++++FG +  ++ LQ
Sbjct: 120  PRIDDELLTQY-AEGLICLSACLAGELPVLLLNGEKEKAEAHVRKYREIFGAENYFIELQ 178

Query: 188  RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   +  + S++ +++A    +PLV TN+  ++ ++DY A D+LM +    + +  +R 
Sbjct: 179  DHGLKEEKKASKLLIEMARKVGVPLVLTNDIHYVEQKDYVAQDILMCIGMKKLRTDTNRM 238

Query: 247  RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +    + Y K+  EM  +F + PE + NTV IA  C+  +    PILP  I K  +D   
Sbjct: 239  QFEGSEFYFKSGEEMAQLFPEYPETILNTVRIAEMCNLEIPQPGPILP--IYKIPEDFSS 296

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +E+  +R+ A  GL+ R             + + RL++EL+++ +M F GYFLIV DFI 
Sbjct: 297  KEDY-IRHLAEEGLKKRYP-------VITDEIKNRLNYELDIVIKMDFVGYFLIVWDFIN 348

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N +PVGPGRGSGAGS+ AY+L ITDIDPL+++LLFERFLNP+R+SMPDFD+DFC +
Sbjct: 349  WAKNNGVPVGPGRGSGAGSILAYSLRITDIDPLKYNLLFERFLNPERVSMPDFDVDFCFE 408

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP-- 483
            RR EVI YV+ KYG E V QIITFG+L+ KA ++DVGR L +P + V+ + KLIP  P  
Sbjct: 409  RRQEVIEYVRQKYGDENVGQIITFGTLKPKAVVKDVGRVLNIPLADVNAITKLIPPKPLT 468

Query: 484  --AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 V+L+   D     +    DP    L EIS  LEG  R++S HAAGIVIG   L+ 
Sbjct: 469  DGIKEVTLKYAVDVVPELKEMAEDPQYKELFEISIALEGRNRNSSLHAAGIVIGKTALTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVDL 598
             VP+Y+D ++    TQF M  IE  GL+K DFLGLKTLTL++ + D + +RG    K  +
Sbjct: 529  YVPLYKDSKTGKVATQFTMDLIENCGLVKMDFLGLKTLTLIKHTEDLIHKRGGEWRKFSI 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I + D ET+ +L+      +FQ ES GM+  L+  +P  +ED+IAL +LYRPGP+D I
Sbjct: 589  GDIDYSDAETFKMLSEGLAAAVFQFESQGMQNILKRAKPSKMEDLIALNALYRPGPMDYI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   K    KI    P ++ +L ET GVI+YQEQVMQ+AQ ++GYSL +AD+LRRAMG
Sbjct: 649  NQFIESKFDNSKIKYPDPCLEDILSETYGVIVYQEQVMQVAQRIAGYSLGQADILRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  E M  +KE+FI GA + G S+  A  IFE+L  FA YGFNKSHAAAY+V+++QTA+
Sbjct: 709  KKKIEVMKTEKEKFIKGAQEKGFSREDADRIFEILIPFAGYGFNKSHAAAYSVLAFQTAY 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYY 837
            +K H+P EF+AA++T E+ + +K+ ++  +A +  ++I+PP VN     F V  D  I +
Sbjct: 769  LKAHFPAEFMAANLTNEITSTDKLPEYIAEAEKMGLKILPPHVNLSDPYFSVSSDGNIIF 828

Query: 838  SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L  IKGVG   A  ++E    +  + S  DF  R D    N+R LE ++  G  D  G 
Sbjct: 829  GLLGIKGVGMQAAHELVEEREKNGRYKSFIDFLERNDLHTQNKRNLEVMIKTGCFDGLGQ 888

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-GTFSDKITLEKFSVENSSVRFENE 955
             R  L+ +LD    YA   ++N +    ++F       FSD    EK        +   E
Sbjct: 889  ERSTLMVNLDGAVAYASQKKENESTGQGSLFEGSGIKEFSD-FVFEKIEEFPKKEKLRLE 947

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            + ++GFY SGHPLD Y+ ++                     L  M+   +Q +T+KG+ +
Sbjct: 948  KELMGFYISGHPLDEYRKVIDNSATLDISHLARATSKKRYVLVGMLTGVRQHQTKKGAMM 1007

Query: 1016 GWVTFSEPAKEYEANFFP 1033
            G+ TF +     +  FFP
Sbjct: 1008 GFGTFEDLNGTLDLVFFP 1025


>gi|239828024|ref|YP_002950648.1| DNA polymerase III subunit alpha [Geobacillus sp. WCH70]
 gi|239808317|gb|ACS25382.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70]
          Length = 1104

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/1034 (40%), Positives = 617/1034 (59%), Gaps = 57/1034 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL V S YSLL     +++++ K    Q  A+A+TD N L+ A+ F  +    GI+P
Sbjct: 3    SFVHLHVRSCYSLLTSPAKISDLVKKAKDLQFSALALTDENVLYGAIPFYMECKRYGIRP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG   DI ++        G++ +P    +VLL     GYQ LI++ S +    Q K   
Sbjct: 63   IIGMITDIVLE--------GESTYP----LVLLAKNETGYQHLIKISSTI----QTKTQE 106

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   WL      GLI LT G SG I+     N    A++ L  +K++FGD  Y+++QR 
Sbjct: 107  GIPEKWLWHY-RGGLIALTPGKSGQIETLLAHNEITKAKQLLERYKQIFGDDFYLSVQRG 165

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             ++  + Y E Q++ L+     PLVATN+  ++ +ED      L+A+    V+  K    
Sbjct: 166  ENKQQEPY-EQQLIHLSNETNTPLVATNDVQYIEKEDAFVQHCLLAIKQGAVI--KTGMA 222

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQK 305
               + YL +  EM   FSDLPEA+EN+ +IA +C   + +    LP++   EKE  D   
Sbjct: 223  TDGERYLTSPEEMKKRFSDLPEAVENSRKIADQCHLHISLDTLKLPKYPVPEKENAD--- 279

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR   + GL  R++  + A       Y +RL++EL+VI +M FS YFLIV DF+ 
Sbjct: 280  ---HYLRRLCLKGLYERVSSPSDA-------YIKRLEYELDVIQQMDFSDYFLIVWDFMN 329

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+K  I  GPGRGS AGS+ AY L ITDIDP+++ LLFERFLNP+R+SMPD DIDF  D
Sbjct: 330  FARKKGIVTGPGRGSAAGSLVAYTLYITDIDPIQYGLLFERFLNPERVSMPDIDIDFPDD 389

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV NKYG + VAQIITFG+  AKAALRD+G+ LQ+   +++ + K +PN   H
Sbjct: 390  RREEVIQYVANKYGQQYVAQIITFGTFGAKAALRDIGKVLQIDSKEMENIIKYVPNK--H 447

Query: 486  PVSLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             +++Q +   S  FR+A  A   + + + I+ K+EGL RH STHAAG++I   PLSQ+VP
Sbjct: 448  GITIQEVYHQSFAFRQAVQASSLLKQWIAIAMKVEGLPRHTSTHAAGVIISSEPLSQIVP 507

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603
            + +    +L +TQ+ M  +E+ GL+K DFLGL+TLTLL+     + Q+ G  +D+  IP 
Sbjct: 508  LQQG-HGELYLTQYPMDVLERLGLLKMDFLGLRTLTLLEHICRLIQQQTGKTIDVRSIPL 566

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +TY L++   T GIFQLES GM+  L+ ++P   EDI+A+ +LYRPGPID I  Y  
Sbjct: 567  DDRKTYELVSKGDTNGIFQLESDGMKHVLKQLKPSQFEDIVAVNALYRPGPIDYIPSYIK 626

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+E +  +HP + P+L  T GV+IYQEQ+MQIA  ++G+SL +AD+LRRA+ KK KE
Sbjct: 627  RKHGEENVSYLHPDLAPILAPTYGVLIYQEQIMQIAANIAGFSLGKADLLRRAVAKKKKE 686

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +D+Q+  F+ G    G  +  A ++++++ +FA+YGFN+SHA AY+++SYQ A++K HY
Sbjct: 687  ILDQQRNEFVQGCIDQGYDEGFANDVYDMIVRFANYGFNRSHAVAYSMLSYQLAYLKAHY 746

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P+ F  A +T  + + EK+  +  +AR+  I+I+PPS+N     F V   +I YSLAAIK
Sbjct: 747  PLYFYTALLTSVIGDEEKVSLYIYEARRKQIEILPPSINQSRYSFSVEHEKIRYSLAAIK 806

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
             VG    + I++     PF    DFC R+  K +NR+ +ESL+ +G  D FG  R  LL 
Sbjct: 807  HVGIAAVKAIVQERKKGPFADFFDFCVRLFGKGINRKTIESLILSGCFDEFGIERASLLA 866

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN----EQRVL 959
            S+D   ++AQ V              E+G FSD I+L+   VE  S+  E     E+ +L
Sbjct: 867  SIDVALEHAQLVGPYV----------EEGLFSD-ISLKPKYVEAPSLSLEEKLMYEKELL 915

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G Y S HP   Y+ + R  G++     +       +++   +V +++ +T+ G  + + T
Sbjct: 916  GVYVSPHPTSAYRKVFRLDGVRSVMSVIREKTDFPVKVGVYIVEERKTRTKTGKEMAFFT 975

Query: 1020 FSEPAKEYEANFFP 1033
             S+ + E +   FP
Sbjct: 976  VSDESGEMDVVAFP 989


>gi|83590706|ref|YP_430715.1| DNA polymerase III DnaE [Moorella thermoacetica ATCC 39073]
 gi|83573620|gb|ABC20172.1| DNA polymerase III catalytic subunit, DnaE type [Moorella
            thermoacetica ATCC 39073]
          Length = 1156

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/1037 (39%), Positives = 616/1037 (59%), Gaps = 39/1037 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL+GA  + +++        PA+A+TD   ++ A+EF + A   GI+P
Sbjct: 3    SFVHLHVHSEYSLLDGAGRIKDLVRAAGEMGMPALALTDHGVMYGAVEFYKAAREQGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF--PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IIGC++ +  +     +   + P        +VLL + A GY+ L  LVS  +L +    
Sbjct: 63   IIGCEVYVAPR-----SRHDREPHRDDYQYHLVLLATDATGYRNLTALVSAAFL-EGFYY 116

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              R+    L    ++GLI L+   +G +      N    A +     +++FG +  Y+ L
Sbjct: 117  KPRVDRELLSR-HSQGLIALSACLAGEVPAHLLKNREDAAYEAATWLREVFGPENFYLEL 175

Query: 187  QRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            Q  +G    R+   ++V LA   ++PLVATN+  ++ ++   AHDVL+ +     +   +
Sbjct: 176  Q-DQGLPEQRQLNRRLVDLAARLKIPLVATNDVHYIRQDQARAHDVLLCIQTGKTLDDPN 234

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R  T   YLK+ +EM ++F ++P AL NT+ IA RC F        LP +     +D 
Sbjct: 235  RLRFPTAQFYLKSPAEMDNLFREVPSALANTLAIAERCHFDFTFGRLHLPAYQVPAGEDA 294

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVA 361
                 + LR  +  GL+ R         Y   D   RQRL++EL +I +M + GYFLIV 
Sbjct: 295  A----SYLRRLSYEGLKRR---------YPHDDGTARQRLEYELGIIEQMGYPGYFLIVW 341

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A++  IPVGPGRGS AGS+ AY L IT IDPLR++LLFERFLNP+R+SMPD D+D
Sbjct: 342  DMVNFARRRGIPVGPGRGSAAGSLVAYCLGITSIDPLRYNLLFERFLNPERVSMPDIDMD 401

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RRDEVI+YV  KYG + VAQIITFG++ A+AA+RDVGR L +P  +VDR+ K++P 
Sbjct: 402  FCFERRDEVIQYVLEKYGRDHVAQIITFGTMAARAAVRDVGRVLGLPLGEVDRIAKMVPM 461

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +    ++L+ A+A     +E+   +  V  LL+ ++ +EG+ RHAS HAAGIVI   PL 
Sbjct: 462  ELG--ITLERALATSPDLKESYEGNREVRELLDTARAIEGMPRHASIHAAGIVITREPLI 519

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
              +P+ +    D   TQ+ M+ +E+ GL+K D LGL+TLT++  + + + +  G ++DL 
Sbjct: 520  HYLPLQKT--GDAVTTQYPMQAVEELGLLKMDLLGLRTLTVIGHAREAIRRNHGRELDLE 577

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P DD  TY LL +  T GIFQLESSGMR  L+ ++P+  EDIIALV+LYRPGP+ + +
Sbjct: 578  SLPLDDRPTYQLLASGETSGIFQLESSGMRAILKELKPERFEDIIALVALYRPGPLGSGM 637

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            V  +  RK+G   I  +HP ++P+LK+T GVI+YQEQVM+IA  L+G++L +AD+LRRAM
Sbjct: 638  VEDFIKRKHGVTPISYLHPALEPILKDTYGVILYQEQVMRIASELAGFTLGQADLLRRAM 697

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  E +  Q++RF++GA    I + +A  IFEL+  FA YGFN SH+AAYA+++YQTA
Sbjct: 698  GKKKPEVLAAQRDRFLAGAEAKAIPRDVAQKIFELMEYFAGYGFNASHSAAYALVAYQTA 757

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYP E + A ++   ++++K++ +  + ++  I ++PP VN   VDF V   +I +
Sbjct: 758  YLKAHYPAELMGALLSSVAEHLDKMEPYLAECQRLGIAVLPPDVNESGVDFTVTGRQIRF 817

Query: 838  SLAAIKG-VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAA+K          I    A  PF SL DFC RVDS++ N+RV+ESL+  GA +    
Sbjct: 818  GLAAVKNAGRAAALAIIAAREAGGPFTSLLDFCRRVDSRQANKRVVESLIRCGAFNSINP 877

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R QLL  LD   + A   +++R +   ++        +D    +      + +    E+
Sbjct: 878  NRRQLLAGLDECLEVAARRQEDRRSGQVSLMDLVPEEVNDPPLPQVTDFSRADI-LAMEK 936

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             +LGFY SGHPL+ Y P+L+K+      +      G+ + +  +V   ++  TRKG  + 
Sbjct: 937  ELLGFYLSGHPLEPYAPVLKKLTSHSLADLAEIADGSQVTIGGLVSGLRRLVTRKGDPMA 996

Query: 1017 WVTFSEPAKEYEANFFP 1033
             +T  + + + EA  FP
Sbjct: 997  VLTLEDFSGQVEAVLFP 1013


>gi|89100367|ref|ZP_01173231.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
 gi|89084886|gb|EAR64023.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
          Length = 1119

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1033 (37%), Positives = 619/1033 (59%), Gaps = 48/1033 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF+HL V+S+YSLL   +S+  ++ +       AIA+TD N ++  ++F ++     I+P
Sbjct: 2    SFIHLHVYSAYSLLTSTVSVEQLVARAKQKGFSAIALTDRNVMYGTVQFYKECLKHSIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG   DI+     K    G +P      +VLL    +G+Q L+++ S +    Q K   
Sbjct: 62   IIGLCADIESAGGEK----GPSP------LVLLAQNQDGFQNLLKISSTL----QTKADG 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
             I + WL+   + GLI LT G  G I++       + A + +  + ++FG DR Y+  Q 
Sbjct: 108  GIPVKWLKHYSS-GLIALTPGLEGEIEQYIAGGEEEKALEAIRLYTEIFGKDRFYLAYQD 166

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +  +   ++ +L+  H     A N   +  +ED  A + L+A+ +   +  ++R R
Sbjct: 167  HGLPEEKKINRKLKELSVNHGFQTAAANQVFYAEKEDAFAQECLLAIKNGDKLQDENRFR 226

Query: 248  VTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +  D +YLK   EM  +F++  EALENT++I  +C+ +L++    LP++   E D     
Sbjct: 227  LQSDEYYLKTAEEMSEVFTESTEALENTIKIMEQCNVMLELDKKHLPKYPVPEGD----- 281

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L      G   R  + +       + +RQRL +EL +I +MKFS YFLIV DFI++
Sbjct: 282  ADTLLEELCWKGFAERYPEAS-------EVHRQRLLYELGIIKKMKFSDYFLIVWDFIKF 334

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++N I  GPGRGS AGS+ +Y L ITD DP+   LLFERFLNP+R+SMPD DIDF   R
Sbjct: 335  SRENGILTGPGRGSAAGSMVSYVLYITDADPIEHELLFERFLNPERISMPDIDIDFPDHR 394

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVIRYV  KYG   VAQIITFG+L AKAA+RD GR   +   +++++ +LIP+ P   
Sbjct: 395  RDEVIRYVAKKYGELHVAQIITFGTLAAKAAMRDTGRVFGLNAKELEQVSRLIPSRPG-- 452

Query: 487  VSLQAIADDSRFREARLADPSVD-RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +L+    +S    A  A+ S++ RL E + K+EGL RH STHAAG+VI + PL  +VP+
Sbjct: 453  TNLKTAYKESEQLRAFTAESSLNKRLFETALKIEGLPRHTSTHAAGVVISEFPLVNVVPI 512

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             +     + +TQ++M+ +E AGL+K DFLGL+ L+L++  L  + ++ G K D+  IP D
Sbjct: 513  QQG-HEGVYLTQYSMEHLEAAGLLKMDFLGLRNLSLIETILSSIQRKTGKKPDIKKIPLD 571

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY LL++  T G+FQLES GMR  L+ ++P   EDI+A+ +LYRPGP++NI  + NR
Sbjct: 572  DEKTYRLLSSGETTGVFQLESDGMRNVLKKLKPTRFEDIVAVNALYRPGPMENIPSFINR 631

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GKE I   HP + P L++T GVI+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK K+ 
Sbjct: 632  KHGKEPISYPHPDLKPYLEKTYGVIVYQEQIMQIASKMAGFSLGEADLLRRAVSKKQKDV 691

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D+++  F SGA  +G  +  A  +++L+ +FA+YGFN+SHA AY+ I+YQ A++K +YP
Sbjct: 692  LDRERAHFASGAVSSGYDEKTAQEVYDLIVRFANYGFNRSHAVAYSFIAYQLAYLKANYP 751

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            + F+AA ++    N +K+ ++ ++ +   + ++PPS+N+    F+     I YSLAA+KG
Sbjct: 752  LNFMAALLSQASGNEDKLAQYIRELKHLGLTLLPPSINSSGYSFQAESGGIRYSLAAVKG 811

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G +  + +  A   K F+ L DFC RV +K   R++LE+ V +G+ D FG  R  LL +
Sbjct: 812  IGASVLKDVFHARRQKRFEDLFDFCIRVPAKSATRKILEAFVHSGSFDEFGEDRAVLLAT 871

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN----EQRVLG 960
            LD   ++A+ V+ + + + E+ F+       D+ +++    EN  +R E+    E+  LG
Sbjct: 872  LDIAIEHAELVKPDESGQ-EDFFSE------DEFSIKPKYAENDPIRIEDKLQYEKEYLG 924

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             Y S HP+ VY      +G+    +     R  NIR AA +   ++ +T+KG  + +++ 
Sbjct: 925  LYLSDHPVSVYAASFASLGVTQLADMEPGSR--NIRTAAYLSEVKKIRTKKGEAMAFLSL 982

Query: 1021 SEPAKEYEANFFP 1033
            ++ + E EA  FP
Sbjct: 983  NDQSGEMEAVVFP 995


>gi|298369652|ref|ZP_06980969.1| DNA polymerase III, alpha subunit [Neisseria sp. oral taxon 014 str.
            F0314]
 gi|298282209|gb|EFI23697.1| DNA polymerase III, alpha subunit [Neisseria sp. oral taxon 014 str.
            F0314]
          Length = 1144

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/1046 (38%), Positives = 598/1046 (57%), Gaps = 64/1046 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            P+    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PVGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARSAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q       +     +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DYLVKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P++  D+L KL
Sbjct: 407  DVDFCQSNRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKL 466

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   P+ L  A+  + + +E   A+   D L+ +++KLE L R    HA G++I   
Sbjct: 467  IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K  
Sbjct: 526  KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYR
Sbjct: 581  TGDIVDVGKIPLDDQAAYKIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+DNI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD
Sbjct: 641  PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+
Sbjct: 700  LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F   
Sbjct: 760  ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             N +I Y+L AIKG G      I+ A  +   F  L DFC RV  + +NRR LE+L+  G
Sbjct: 820  PNMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943
            A D    +R  LL ++D           N   K  N  A++ G F       + + L   
Sbjct: 880  AFDSIEPNRAMLLANID-------LAMNNADQKAAN--ANQGGLFDMMEDAIEPVQLIDA 930

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVV 1002
             + + S +   E+ V+GFY SGHP   Y   +R++        +  ++  +++RLA  V 
Sbjct: 931  PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVT 986

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            + +    ++G +I +V+  + + + E
Sbjct: 987  AVRTMMGKRG-KIAFVSLEDLSGQIE 1011


>gi|157738461|ref|YP_001491145.1| DNA polymerase III subunit alpha [Arcobacter butzleri RM4018]
 gi|157700315|gb|ABV68475.1| DNA polymerase III, alpha subunit [Arcobacter butzleri RM4018]
          Length = 1187

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/1052 (38%), Positives = 611/1052 (58%), Gaps = 56/1052 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL +H+ YSLL+GA  +  +  K+      ++A+TD  N+F A+ F       GI+
Sbjct: 5    PQFTHLHLHTEYSLLDGANKIKPLAKKLKKLGMTSVAMTDHGNMFGAIAFYNAMRDEGIK 64

Query: 69   PIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIG +  I + +D    TN+ +        + L      GY+ L+ L S+ Y+ +    
Sbjct: 65   PIIGMEAYIHNSEDISDKTNRQRY------HLCLYAKNEIGYKNLMYLSSQAYI-NGFYY 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKL 177
              RI    L+E  +EGL+       G I        +R   F +   + A+K  L +K++
Sbjct: 118  YPRINKKILKE-NSEGLVCSAACLQGEINWHLNTQSERNVKFGAKGYEEAKKIALEYKEI 176

Query: 178  FGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            FGD  Y+ + RH   D+ + + Q+++L+    + +VATN++ +L ++D +AH+  M +A 
Sbjct: 177  FGDDFYLEIMRHGISDQLFVDDQILKLSKETGIKVVATNDTHYLEQKDADAHEAFMCIAM 236

Query: 237  STVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
            + +    +R R +  + YLK+  ++  ++SD+PEA+E T EIA +C+  +++  P  P F
Sbjct: 237  NKLYDDPNRLRHSVHEFYLKSPEQIAKLYSDIPEAIETTQEIADKCNLTIKLGNPTPPNF 296

Query: 296  I-----EKECDDIQKEEENE--LRNKAV-------AGLEVRLAQGAIAKGYHAQDYRQRL 341
                   +E      E +NE  L N  +        GLE RL    I    H Q+YR RL
Sbjct: 297  KFTRQKSQEAGLTLPEPDNEYSLENDKILFIHECRIGLEDRLK---IVPAEHHQEYRDRL 353

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + E+ +I  MKF GY LIV DF+  AK+  IPVGPGRGS AGS+ A++L ITDIDP+ + 
Sbjct: 354  EVEIEIINNMKFPGYMLIVWDFVIVAKRMGIPVGPGRGSAAGSLVAFSLKITDIDPIPYG 413

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPD D+DFCQ RR E+I YV  +YG   VAQIITFG L AK  +RDV
Sbjct: 414  LLFERFLNPERVSMPDIDMDFCQSRRGEIIDYVVQQYGRANVAQIITFGKLLAKGVIRDV 473

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             R L MPYS+ D + KLIP++    +   +   + + +E   ADP   R+ E +  LEGL
Sbjct: 474  ARVLDMPYSKADAMAKLIPDELGIDLK-NSWEKEPKIKELCEADPQAARVWEYALALEGL 532

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R+A THAAG+VI + PL +  P+++    D   TQ+N K+IE   LIKFDFLGLKTLT+
Sbjct: 533  NRNAGTHAAGVVISNEPLWKKTPLFKPSGLDTLATQYNGKYIEDVDLIKFDFLGLKTLTV 592

Query: 582  LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++++   + QR G +V+      +D   Y L+ T  T+G+FQ+ES GM+   + ++P   
Sbjct: 593  IEEANKLIEQRHGKRVNFITTDVNDKGVYDLIQTGNTIGLFQIESDGMQDLCKRLKPSNF 652

Query: 641  EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLID----PMLKETQGVIIYQEQ 694
            EDIIA+++LYRPGP+++ ++  +  RK+G+ KI   H  ++    P+L+ T GVI+YQEQ
Sbjct: 653  EDIIAVLALYRPGPMESGMLDDFIERKHGRAKIDYFHDELESALKPILENTYGVIVYQEQ 712

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VMQI Q + G+SL  AD++RRAMGKKIKEEMD+ K  F  GA   G ++  A  +F+L+ 
Sbjct: 713  VMQIVQSVGGFSLGGADLVRRAMGKKIKEEMDRLKGEFADGAQNKGYTRAYAEELFDLIV 772

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
            KFA YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE DN +K+ K+  + ++  +
Sbjct: 773  KFAGYGFNKSHSAAYALVTFYTSYLKCYYPAEFMAALLTLEKDNTDKVVKYVDETKRLGL 832

Query: 815  QIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
            ++ PP +N   + F      G   + + + AIKG G      I+ A  + PF  L DF S
Sbjct: 833  ELFPPDINKSDLVFSAKKIDGKEVVMFGMGAIKGAGDVAINAILNARGNAPFKDLPDFIS 892

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH---ENIF 927
            R+D  K+N+RV+ESL  AGA D FGY+R  L   L+ I+K    V K  T K     ++F
Sbjct: 893  RIDGSKVNKRVIESLTKAGAFDSFGYTRKSL---LNQIEKIVDTVGKAATAKKMMTGSLF 949

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +      I LE  +  +     E E+  LGFY SGHPLD YK  L K+      +  
Sbjct: 950  GDSEELTKIDIELEHLNEFDPKELLEFEKATLGFYVSGHPLDEYKKDLEKINFTLSSQID 1009

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
                G+       + S  +K ++KG++ G V+
Sbjct: 1010 ELEDGSQALFVGKIESITEKTSKKGNKFGIVS 1041


>gi|119899497|ref|YP_934710.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
 gi|119671910|emb|CAL95824.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
          Length = 1172

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/993 (39%), Positives = 590/993 (59%), Gaps = 42/993 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P F+HL++H+ YS+ +G + ++  + + AAD  PA+ I+D  NLF  ++F + A   G++
Sbjct: 11  PRFIHLRLHTEYSITDGIVQIDQAIAQAAADGMPAMGISDLANLFGMVKFYKGARGKGVK 70

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PIIG         +  + N+ +   P    ++L+  + +GY +L EL+++ YL ++ +  
Sbjct: 71  PIIGV--------DAWIQNEAERDKPY--RVLLICKSRKGYGQLCELLTQAYLENKYRGR 120

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +   W +    + L+ L+G   G + +A    +  +AE+    + +LF    Y+ +QR
Sbjct: 121 AEMRREWFENGAADELLCLSGAFFGDVGQAIVNGNIDLAERLAADWSRLFPGAFYIEIQR 180

Query: 189 --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H G + Y     +Q+A   +LP+VAT+   FL+ +D++AH+  + +A   V++ K RP
Sbjct: 181 AGHPGTETYIR-HALQIANKLDLPVVATHPVQFLTPDDFQAHEARVCIAQGYVLADKRRP 239

Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           R  T   YLK++ EM ++F+D+P+ALEN VEIA+RCS  +Q+    LP F   +   +  
Sbjct: 240 RDFTEQQYLKSQDEMCALFADIPDALENAVEIAKRCSVTVQLGKNFLPLFPTPDGMTL-- 297

Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             ++ L  +A  GLE RL Q       +      Y +RL FE + I +M F GYFLIVAD
Sbjct: 298 --DDFLVQEAKKGLEERLVQLYPHPEEREKQRPRYEERLKFETDTIIQMGFPGYFLIVAD 355

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           FIQW K N +PVGPGRGSGAGS+ AY+L ITD+DPL ++LLFERFLNP+R+SMPDFDIDF
Sbjct: 356 FIQWGKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLEYALLFERFLNPERVSMPDFDIDF 415

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           CQD R  VI YV+ +YG + V+QI TFG+L +KA +RDVGR L MPY   DRL KL+P +
Sbjct: 416 CQDNRYRVIEYVRERYGKDAVSQIATFGTLASKAVVRDVGRVLDMPYGLCDRLSKLVPIE 475

Query: 483 PAHPVSL-QAIADDSRFREARLAD----PSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            A PVSL +A   + +  E  + D     +V  L +++Q LEGL R    HA G++I   
Sbjct: 476 GAKPVSLARAYEMEPQIGEM-MKDGNDGEAVQTLWDLAQPLEGLTRGVGMHAGGVLIAPG 534

Query: 538 PLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595
            L+   P+Y  D     PV+QF+   +E  GL+KFDFLGL+ LT+++ +LD++ +  G +
Sbjct: 535 KLTDFCPLYIADGDDATPVSQFDKDDVEAVGLVKFDFLGLRNLTIIELALDYVERLTGER 594

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
           VDL  + F D   Y +L    T  IFQ+ES GM++ L+ + PD  EDIIA+++LYRPGP+
Sbjct: 595 VDLMSLGFQDPAAYQILKDANTTAIFQVESDGMKKLLKKLAPDRFEDIIAVLALYRPGPL 654

Query: 656 DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            + +V  +  RK G+++I   HP +   L+ T GVI+YQEQVMQI+Q++ GY+L  AD+L
Sbjct: 655 GSGMVDDFILRKKGQQEIDYFHPDLKACLEPTYGVIVYQEQVMQISQIIGGYTLGGADML 714

Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
           RRAMGKK  EEM K +     GA + G    +A  +F+L+ KFA+YGFNKSH AAYAV++
Sbjct: 715 RRAMGKKKPEEMAKHRATIADGAKQKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAVVT 774

Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
           Y TAW+K H+   F+AA+M+ ++DN + +K F +D     I I+PP VN     F   D 
Sbjct: 775 YHTAWLKAHHCAAFMAATMSSDLDNTDTVKIFFEDTLANKIAILPPDVNESDYRFVPVDR 834

Query: 834 R-IYYSLAAIKGVG----TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
           + I Y L A+KGVG               A KP+  L DFC RVD + +NRRV+E+L+ A
Sbjct: 835 KTIRYGLGAVKGVGEPAVRAIIAARASGGAVKPYRDLFDFCERVDRRLVNRRVVEALIRA 894

Query: 889 GALDCF----GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
           GA+D      G  R Q+L ++    + A+  +         +F          +      
Sbjct: 895 GAMDTLEGHRGRDRAQVLATVPLAMEAAE--QAAANALQGGLFDLVPEAAGAALEFADVR 952

Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                 R + E+  +GF+ SGHP + +KP +R+
Sbjct: 953 PWTERERLKEEKTAIGFFLSGHPFNAFKPEVRR 985


>gi|260655562|ref|ZP_05861050.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1]
 gi|260630010|gb|EEX48204.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1]
          Length = 1140

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/1041 (38%), Positives = 627/1041 (60%), Gaps = 51/1041 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA+   ++  + A   QPA+A+TD   ++ A+EF Q   +AG++PI
Sbjct: 5    FVHLHVHTEYSLLDGAIRCGDLAARTAQWHQPAVAMTDHGVMYGAVEFFQACKSAGVKPI 64

Query: 71   IGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IGC++ +    +Q   K ++           ++LL    EGY  L++LVS +   D    
Sbjct: 65   IGCEMYVAPEGIQSREKRSHH----------LILLAKDDEGYHNLVKLVS-IANTDGFYY 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              RI    L    ++GLI  +   +G +           A +    ++ + G +  Y+ +
Sbjct: 114  KPRIDHDLLARY-SKGLIASSACLAGEVSSLLLAGEDGRAFETAQLYRDIMGPENYYLEI 172

Query: 187  QRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              +   ++   +++ V++A  +  PL+ATN+S +L+ ED++ H++L+ V  +  ++   R
Sbjct: 173  MSNTLPEQVAANKLLVEMARRNGFPLIATNDSHYLNPEDFDWHELLLCVGTNKTINDPGR 232

Query: 246  PRV-TPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAP--ILPRFIEKECD 301
                  D YL++  EM + F +++P+AL NTVEIA RCSF  ++      LP+F   E +
Sbjct: 233  MSFEVNDFYLRSPEEMWNFFGAEVPDALTNTVEIAERCSFEFKLKTGHYSLPKFDVPEGE 292

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             +    ++ L   A AGLE RL       G    +Y QRL +EL +I++M FSGYFLI+A
Sbjct: 293  TL----DSFLAKGARAGLEKRLG------GVIPPEYEQRLQYELGIISQMGFSGYFLIIA 342

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D IQ  K  +IP+GPGRGS AGS+ AYA+ IT++DPLRF L+FERFLNP+R+SMPD D D
Sbjct: 343  DVIQACKNRHIPIGPGRGSAAGSLVAYAMRITELDPLRFGLIFERFLNPERISMPDIDTD 402

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
                 R+ +IRYV +KYG E V+QIITFG +++KAA++DVGRA+ +PY+ VD++ KL+P 
Sbjct: 403  VSDKGREALIRYVIDKYGVENVSQIITFGRMKSKAAIKDVGRAMGLPYADVDKVAKLVP- 461

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            D    ++ +AI      +     DP V  LL+ + K+EGL RH S HAAG+VI   PL+ 
Sbjct: 462  DGVKSIA-EAIEQTPDLKSLNDEDPQVAELLDSASKMEGLARHCSQHAAGVVITPMPLTD 520

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSL 600
            +VP+ R +  +  VTQF+M+ +E  GL+K DFLGL+TL++L+ +L+ + + G   V+L  
Sbjct: 521  VVPV-RKIGENQVVTQFSMEPVENLGLVKMDFLGLQTLSILEDALENIRENGKGNVNLEE 579

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD E + LL    TLGIFQLES GMR+ +  M PD   D++A+++LYRPGP+++ +V
Sbjct: 580  IPLDDPEVFKLLQNADTLGIFQLESPGMRRLIRRMVPDSFNDLVAILALYRPGPLESGMV 639

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y + K+G E++  +HP ++P+LKET GV++YQEQVM+ A +L+GY+L  AD+LRRAMG
Sbjct: 640  DQYVDCKHG-ERVHYLHPKLEPVLKETYGVVLYQEQVMKCASVLAGYTLGGADLLRRAMG 698

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  E M++Q+  F+ GA KNGI K  A NIF+++ KFA YGFNKSH+AAYA+ISYQTAW
Sbjct: 699  KKKIEVMNQQRAIFVEGALKNGIDKNSAENIFDIIQKFAGYGFNKSHSAAYALISYQTAW 758

Query: 779  MKTHYPVEFLAASMTLEMDNVEKI-KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            +KTHYP EF+AA +T ++   + +   + ++ R   I ++ P +N     F      I +
Sbjct: 759  LKTHYPKEFMAAYLTSKIGAKKDVMASYVKEVRSSGIDVLAPDINESRSSFTAAGEVIRF 818

Query: 838  SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L A+  +G      I+E+  A  PF  + DF +RVD + +N+  LESL+ AGA DCF  
Sbjct: 819  GLGAVSRMGENAVSAILESRKAGGPFKDMWDFVTRVDLRHVNKAALESLIKAGAFDCFST 878

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENSSVRFEN 954
            +R QLL++   +   A  +  +  +   ++F    G  S  D++ L     ++   R   
Sbjct: 879  NRRQLLEAASPMVDAASRLHVD--DGQASLF----GDLSSLDRVELPDVPDDDLETRLAM 932

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR--LAAMVVSKQQKKTRKG 1012
            E+ V+G Y SGHP+D ++ +++   +      +A     ++    A ++   +++ T++G
Sbjct: 933  EKEVIGMYISGHPIDQFREVIQGQ-VNATASDLAHWHSQSVAPVFAGLLTEWKERITKRG 991

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              +G +   +  +E E   FP
Sbjct: 992  DAMGVLRLDDGEREVEVVCFP 1012


>gi|42528286|ref|NP_973384.1| DNA polymerase III subunit alpha [Treponema denticola ATCC 35405]
 gi|41819556|gb|AAS13303.1| DNA polymerase III, alpha subunit [Treponema denticola ATCC 35405]
          Length = 1149

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/1038 (39%), Positives = 594/1038 (57%), Gaps = 32/1038 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS +SLL+GA S+  +  K     Q A+A+TD  N+F A+ F        I+PI
Sbjct: 5    FVHLHVHSDFSLLDGAASVKALAAKAEKLGQTALALTDHGNMFGAINFYNACKEKNIKPI 64

Query: 71   IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IGC+  +  +     K T  GK  +     ++LL     GY+ L+ L S+ Y  +     
Sbjct: 65   IGCEFYVAPESRFEKKETPGGKKYY----HLILLAKNETGYRNLMVLCSKGYT-EGMYYK 119

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             RI    L +   EGLI L+   +G +         + AE  +  ++++FG +  ++ LQ
Sbjct: 120  PRIDDELLAQY-AEGLICLSACLAGELPVLLLNGEKEKAEAHVRKYREIFGAENYFIELQ 178

Query: 188  RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   +  + S++ +++A    +PLV TN+  ++ ++DY A D+LM +    + +  +R 
Sbjct: 179  DHGLKEEKKASKLLIEMARKVGVPLVLTNDIHYVEQKDYVAQDILMCIGMKKLRTDTNRM 238

Query: 247  RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +    + Y K+  EM  +F + PEA+ NTV IA  C+  +    PILP  I K  +D   
Sbjct: 239  QFEGSEFYFKSGEEMAQLFPEYPEAILNTVRIAEMCNLEIPQPGPILP--IYKIPEDFSS 296

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +E+  +R+ A  GL+ R             + + RL++EL+++ +M F GYFLIV DFI 
Sbjct: 297  KEDY-IRHLAEEGLKKRYP-------VITDEIKNRLNYELDIVIKMDFVGYFLIVWDFIN 348

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N +PVGPGRGSGAGS+ AY+L ITDIDPL+++LLFERFLNP+R+SMPDFD+DFC +
Sbjct: 349  WAKNNGVPVGPGRGSGAGSILAYSLRITDIDPLKYNLLFERFLNPERVSMPDFDVDFCFE 408

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP-- 483
            RR EVI YV+ KYG E V QIITFG+L+ KA ++DVGR L +P + V+ + KLIP  P  
Sbjct: 409  RRQEVIEYVRQKYGDENVGQIITFGTLKPKAVVKDVGRVLNIPLADVNAITKLIPPKPLT 468

Query: 484  --AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 V+L+   D     +    D     L EIS  LEG  R++S HAAGIVIG   L+ 
Sbjct: 469  DGIKEVTLKYAVDVVPELKEMAEDSQYKELFEISIALEGRNRNSSLHAAGIVIGKTALTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVDL 598
             VP+Y+D ++    TQF M  IE  GL+K DFLGLKTLTL++ + D + +RG    K  +
Sbjct: 529  YVPLYKDSKTGKVATQFTMDLIENCGLVKMDFLGLKTLTLIKHTEDLIHKRGGEWRKFSI 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I + D ET+ +L+      +FQ ES GM+  L+  +P  +ED+IAL +LYRPGP+D I
Sbjct: 589  GDIDYSDAETFKMLSEGKAAAVFQFESQGMQNILKRAKPSKMEDLIALNALYRPGPMDYI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   K    KI    P ++ +L ET GVI+YQEQVMQ+AQ ++GYSL +AD+LRRAMG
Sbjct: 649  NQFIESKFDNSKIKYPDPCLEDILSETYGVIVYQEQVMQVAQRIAGYSLGQADILRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  E M  +KE+FI GA + G S+  A  IFE+L  FA YGFNKSHAAAY+V+++QTA+
Sbjct: 709  KKKIEVMKTEKEKFIKGAQEKGFSREDADRIFEILIPFAGYGFNKSHAAAYSVLAFQTAY 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYY 837
            +K H+P EF+AA++T E+ + +K+ ++  +A +  ++I+PP VN     F V  D  I +
Sbjct: 769  LKAHFPAEFMAANLTNEITSTDKLPEYIAEAEKMGLKILPPHVNLSDPYFSVSSDGNIIF 828

Query: 838  SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L  IKGVG   A  ++E    +  + S  DF  R D    N+R LE ++  G  D  G 
Sbjct: 829  GLLGIKGVGMQAAHELVEEREKNGRYKSFIDFLERNDLHTQNKRNLEVMIKTGCFDGLGQ 888

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-GTFSDKITLEKFSVENSSVRFENE 955
             R  L+ ++D    YA   ++N +    ++F       FSD    EK        +   E
Sbjct: 889  ERSTLMVNMDGAVAYASQKKENESTGQGSLFEGSGIKEFSD-FVFEKIEEFPKKEKLRLE 947

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            + ++GFY SGHPLD Y+ ++                     L  M+   +Q +T+KG+ +
Sbjct: 948  KELMGFYISGHPLDEYRKVIDNSATLDISHLARATSKKRYVLVGMLTGVRQHQTKKGAMM 1007

Query: 1016 GWVTFSEPAKEYEANFFP 1033
            G+ TF +     +  FFP
Sbjct: 1008 GFGTFEDLNGTLDLVFFP 1025


>gi|238020460|ref|ZP_04600886.1| hypothetical protein GCWU000324_00342 [Kingella oralis ATCC 51147]
 gi|237867440|gb|EEP68446.1| hypothetical protein GCWU000324_00342 [Kingella oralis ATCC 51147]
          Length = 1156

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/1027 (39%), Positives = 588/1027 (57%), Gaps = 32/1027 (3%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L+ HS +S+ +  + +++ +    A+  PA+A+TD  N F  L+F +    AGI+PI 
Sbjct: 4    IPLRAHSEFSITDSIIRISDYVAAARAENYPALALTDLMNTFGLLKFYKACRKAGIKPIC 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQSVR 130
            G  + I+  +  +  ++           VLL+   +GY RL EL++  +  D + K + +
Sbjct: 64   GADVRIENPEQPEKPHRA----------VLLIRNEQGYIRLNELLTAAFEADDRNKHTPQ 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I  +WL +    GL+ L+G   G +       +   A      +   F +  Y+ LQR  
Sbjct: 114  INQAWLAQGDNSGLLCLSGAQMGEVGSHLMLGNEDKAHAAAQKYAAWFPNAFYLELQRLP 173

Query: 191  GYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
                +    S  +++A   +LP+VAT+ + FL  EDY+AHD  + +A    +    RP  
Sbjct: 174  EKPDWEISVSGSLKIAQALQLPVVATHPTQFLQREDYKAHDARVCIAGGWTLIDPKRPHD 233

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             TP  +     E  + F+D+PEAL N+ EIA+RC+  L +    LP F   +  D+    
Sbjct: 234  FTPGQHFLTPDEFAARFADIPEALANSQEIAKRCNLTLTLGKNFLPLFPTPDGMDLN--- 290

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFI 364
             + LR+ A  GL+ RLA     +   AQ   +Y+ RLDFEL++I +M+F GYFLIV DFI
Sbjct: 291  -DYLRHLANEGLQERLAVLYPNEAERAQRQPEYQARLDFELDIIIKMQFPGYFLIVQDFI 349

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAK N  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 350  NWAKNNGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDIDFCQ 409

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
              R  VI YV+ KYG + V+QI+TFG++ +KA +RDVGR LQ+P++  DRL KLIP +  
Sbjct: 410  ANRGRVIEYVREKYGKQAVSQIVTFGAMSSKAVIRDVGRVLQLPFALCDRLSKLIPLEAN 469

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             P+ L+         E  + +   D LL ++ KLE L R+   HA G++I    +S    
Sbjct: 470  KPLHLKDALAAEPEIEQIIREEEADELLNLAMKLEDLTRNLGMHAGGVLIAPSKISDFCG 529

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +Y+   +  PV+ F+   +E+ GL+KFDFLGL+ LT+++ + +F+ Q  G  VD+S IP 
Sbjct: 530  VYQADENASPVSMFDKGDVEEIGLVKFDFLGLRNLTIIEMAQNFIRQTTGEHVDVSHIPL 589

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD   Y +     T  +FQ ESSGM++ L       +E+IIA VSLYRPGP+D I  +  
Sbjct: 590  DDQVAYKIFRDANTTAVFQFESSGMKKMLAQANTTNLEEIIAFVSLYRPGPMDLIPDFIE 649

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R  G  K   +HPL++P+L+ T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGKK  E
Sbjct: 650  RMKGA-KFEYMHPLLEPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAMGKKKPE 708

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM K +E F  GA+K GIS+  A  IF+ + KFA YGFNKSHAAAYA +SYQTAW+K HY
Sbjct: 709  EMVKHREIFAEGAAKQGISREKADEIFDYMEKFAGYGFNKSHAAAYAYVSYQTAWLKAHY 768

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDAR-QFN-IQIMPPSVNTPCVDF-KVGDNRIYYSLA 840
            P EF+AA+M+ E+DN +++K F  DA+ + N I+ +PP VN     F      +I Y+L 
Sbjct: 769  PAEFMAATMSSELDNTDQLKVFFDDAQSKLNGIRFLPPDVNESFYRFIPNAQKQIRYALG 828

Query: 841  AIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AIKG G      I+ A  +   F  L DFC RV  +  NRRVLE+L+  GA D    +R 
Sbjct: 829  AIKGTGEAAVNAIVAARESGGKFTDLFDFCERVGKQHANRRVLEALIRGGAFDSIEPNRA 888

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
             LL ++D     AQ  +K        +F   +   +D + L+     N + +   E++ +
Sbjct: 889  MLLGNID--LAIAQAEQKADNANQGGLFDMVEDALAD-VPLQYIEPWNEATKLAEEKQAI 945

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GFY SGHP   Y   +R           A  +    RLA    S +   T+ G  I  + 
Sbjct: 946  GFYLSGHPFAPYASEVRAFAPTPLGSLKA--KDGTQRLAGFATSIRSIMTKNGKMIAVLL 1003

Query: 1020 FSEPAKE 1026
              + AK+
Sbjct: 1004 EDDTAKQ 1010


>gi|289675281|ref|ZP_06496171.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. syringae
            FF5]
          Length = 1081

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/968 (40%), Positives = 569/968 (58%), Gaps = 59/968 (6%)

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
            Y+ L EL+SR ++  Q    + I   W+ +  +EG+I L+    G I  A    +   A+
Sbjct: 1    YRNLTELISRGFIEGQRNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEAD 59

Query: 169  KRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            + L  + ++F DR Y+ +QR +R  D       V LA  H  PLVATN+  F+ + D+EA
Sbjct: 60   ELLREWLEVFPDRFYIEVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEA 119

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            H+  + +     +    R     D  YLK+  EM  +FSDLPEALENTVEIA+RC+  ++
Sbjct: 120  HETRVCIGEGRALDDPRRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVK 179

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRL 341
            +    LP F   +   I    +   R  +  GLE RLA        + Y A  Q Y  RL
Sbjct: 180  LGTHFLPNFPIPDGMTI----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRL 235

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            +FEL++I +M F GYFLIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + 
Sbjct: 236  NFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYD 295

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPDFD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV
Sbjct: 296  LLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDV 355

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             R     Y   DRL K+IP +    +  +A   +   R+    D     + E++ KLEG+
Sbjct: 356  ARVQGKSYGLADRLSKMIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGI 414

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R+   HA G+VI    L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT+
Sbjct: 415  VRNVGKHAGGVVIAPTKLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTI 474

Query: 582  LQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            +  +L  + +   KV     D++ IP DD  TY LL    T  +FQLES GM++ ++ ++
Sbjct: 475  IDWALKTINRDRAKVNEEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLK 534

Query: 637  PDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLID-------PMLKETQG 687
            PDC+ED+IALV+L+RPGP+ + +V  + NRK+G+ ++   +P +D       P+L  T G
Sbjct: 535  PDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYG 592

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQVMQIAQ+++GY+L  AD+LRRAMGKK  EEM KQ+  FI G   N I   +A 
Sbjct: 593  IILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAG 652

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
            NIF+L+ KFA YGFNKSH+AAY ++SYQTAW+KTHYP  F+AA ++ +M N +K+    +
Sbjct: 653  NIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIE 712

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            + R   +++  P VNT    F V D+ RI Y L AIKGVG      I +A  D PF  L 
Sbjct: 713  EVRTMKLRLDAPDVNTSEFKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQDGPFKDLF 772

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFG---------------YSRMQLLQSLDNIQKY 911
            DFC+RVD K++N+R L+ L+ +GALD  G                +R  LL +L+   + 
Sbjct: 773  DFCARVDLKRVNKRTLDGLIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQA 832

Query: 912  AQWVEKNRTNKHENIFAH-----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
            A+   ++  + H ++F       +   +++     + S+++   R   E+  LG Y +GH
Sbjct: 833  AEQTARSHDSGHADLFGGLFVEADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGH 889

Query: 967  PLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            P+D Y+  +R+       + +  ++   +   +A ++++ +  K +KG ++G++T  + +
Sbjct: 890  PIDEYEGEIRRFA----RQRIIDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRS 945

Query: 1025 KEYEANFF 1032
               EA+ F
Sbjct: 946  ARIEASLF 953


>gi|218767589|ref|YP_002342101.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis
            Z2491]
 gi|14194676|sp|Q9JVX8|DPO3A_NEIMA RecName: Full=DNA polymerase III subunit alpha
 gi|121051597|emb|CAM07897.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis
            Z2491]
          Length = 1144

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/1046 (38%), Positives = 597/1046 (57%), Gaps = 64/1046 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   D          PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVRIGNPD------APDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  TP  +      M   FSDLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPSQFFIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q       +     +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DYLVKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++  D+L KL
Sbjct: 407  DVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKL 466

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   P+ L  A+  + + +E   A+   D L+ +++KLE L R    HA G++I   
Sbjct: 467  IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K  
Sbjct: 526  KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYR
Sbjct: 581  TGDIVDVGTIPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+DNI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD
Sbjct: 641  PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+
Sbjct: 700  LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-V 830
            ISYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F   
Sbjct: 760  ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D +I Y+L AIKG G      I  A  +   F  L DFC RV  + +NRR LE+L+  G
Sbjct: 820  PDMKIRYALGAIKGTGEAAVESITSARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943
            A D    +R  LL ++D           N   K  N  A++ G F       + + L   
Sbjct: 880  AFDSIEPNRAMLLANID-------LAMNNADQKAAN--ANQGGLFDMMEDAIEPVRLIDA 930

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVV 1002
             + + S +   E+ V+GFY SGHP   Y   +R++      + ++ ++  +++RLA  V 
Sbjct: 931  PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKLSKLKPQDSVRLAGFVT 986

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            + +    ++G +I +V+  + + + E
Sbjct: 987  AVRTMMGKRG-KIAFVSLEDLSGQVE 1011


>gi|325127575|gb|EGC50498.1| DNA polymerase III, alpha subunit [Neisseria meningitidis N1568]
          Length = 1144

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/1040 (38%), Positives = 597/1040 (57%), Gaps = 52/1040 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F++ +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TPD +      M+  F+DLPEALENTVEIA+RC+  + +    LP F     D + 
Sbjct: 234  PRDFTPDQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLF--PTPDGLS 291

Query: 305  KEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +++   +L NK +    V+L      +     +Y++RLDFELN+I +MKF GYFLIV DF
Sbjct: 292  RDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDF 351

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+DFC
Sbjct: 352  INWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFC 411

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP + 
Sbjct: 412  QANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEA 471

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              P+SL  A+  + + +E   A+   D L+ +++KLE L R    HA G++I    +S  
Sbjct: 472  NKPLSLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDY 530

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------V 596
             P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K      +
Sbjct: 531  SPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNTTGDII 585

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+D
Sbjct: 586  DVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMD 645

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            NI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRA
Sbjct: 646  NIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRA 704

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQT
Sbjct: 705  MGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQT 764

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRI 835
            AW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +I
Sbjct: 765  AWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKI 824

Query: 836  YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y+L AIKG G      I+ A  +   F  L DFC RV  + +NRR LE+L+  GA D  
Sbjct: 825  RYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSI 884

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFSVENS 948
              +R  LL ++D           N   K  N  A++ G F       + + L    + + 
Sbjct: 885  EPNRAMLLANID-------LAMNNADQKAAN--ANQGGLFDMMEDAIEPVRLVDAPMWSE 935

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
            S +   E+ V+GFY SGHP   Y   +R++     +        +++RLA  V + +   
Sbjct: 936  SEKLAEEKTVIGFYLSGHPFGPYAQEVRQIAPTKLDRLKPQ---DSVRLAGFVTAVRTMM 992

Query: 1009 TRKGSRIGWVTFSEPAKEYE 1028
             ++G +I +V+  + + + E
Sbjct: 993  GKRG-KIAFVSLEDLSGQVE 1011


>gi|320107146|ref|YP_004182736.1| DNA polymerase III subunit alpha [Terriglobus saanensis SP1PR4]
 gi|319925667|gb|ADV82742.1| DNA polymerase III, alpha subunit [Terriglobus saanensis SP1PR4]
          Length = 1173

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/997 (39%), Positives = 592/997 (59%), Gaps = 41/997 (4%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +  F HL +H+ YSLL+GA  ++ +   +    Q A A+TD  N++ A+ F       G+
Sbjct: 2   AAEFTHLHLHTDYSLLDGACDVDKLAAHLKKTGQTAAAMTDHGNIYGAVHFFDAMEKKGV 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           +PI+GC+L +    + +    G   F      ++L    EGY+ L+ L S   L +   +
Sbjct: 62  KPILGCELYLSKTADHREMADGYNHF------LVLAENEEGYKNLVRLTSEASL-NGFYR 114

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
             R+   +L +  TEGLI  +G  +G +++    +  + A+K    F ++FG +  ++ +
Sbjct: 115 KPRVSKEFLSK-HTEGLIGFSGCLAGEVNQHLMGDRYEEAKKSAGMFSEMFGKNNFFLEI 173

Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           Q H    D+     + ++     +PL+ATN+S ++  +D  AH++L+ V  +  ++  +R
Sbjct: 174 QDHGLEPDKKVCDALFKMEKELGIPLIATNDSHYVEADDSRAHEILLCVQTAGSMNDPNR 233

Query: 246 PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R  T + Y+K   EM   F+  PE    T++   RC+  +Q      P F   E   ++
Sbjct: 234 FRFDTQEFYIKTAEEMHRTFAHAPEVCTRTMQFIDRCNLKMQKVKDPFPAFPVPEGMTLE 293

Query: 305 KEEENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              E   R      LE  +A    +G + K     +Y +RL+ EL  I +MKF GYF+IV
Sbjct: 294 SYFEEICRKGLKKRLETSVAHLRERGLLRKTI--SEYEERLNTELACIKQMKFPGYFMIV 351

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            DFI++A++ NIPVGPGRGS AGS+ AY + ITDIDPL+  LLFERFLNP+R+SMPD DI
Sbjct: 352 WDFIRYAREQNIPVGPGRGSAAGSLVAYVMEITDIDPLQHELLFERFLNPERVSMPDIDI 411

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DFC +RR+EVI YV+ KYG+++VAQIITF ++ AKAA++DVGRAL MPY +VDR+ K+IP
Sbjct: 412 DFCMNRREEVIEYVKRKYGNDQVAQIITFNTMAAKAAIKDVGRALDMPYGEVDRIAKMIP 471

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 +  QA+ D +   +A  +DP +  L++ +Q+LEGL R A  HAAG+VI  +PL+
Sbjct: 472 ATIGISIE-QAMKDSTALGQAYDSDPRIKELIDAAQRLEGLVRGAGVHAAGVVIAPQPLT 530

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLS 599
           +LVP+ R  + +  VT ++MK I+K GL+K DFLGL TLT++   L  +   RGV+VD++
Sbjct: 531 ELVPVTR-AKGEGIVTAYDMKAIDKMGLLKMDFLGLTTLTVIDDCLKLIKLNRGVEVDMA 589

Query: 600 LIPFDDHETYHLLTTKG-TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            IP DD  T+  +  +  T G+FQ ES GMR  L   +P  IED+ AL +LYRPGPI   
Sbjct: 590 TIPLDDAVTFEKVFHRALTSGVFQFESGGMRDVLRRYKPTSIEDLTALNALYRPGPIQGG 649

Query: 659 VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
           ++  +  RK G+  +  I P ++ +L+ET GVI+YQEQVMQI+ +++GYSL  AD+LRRA
Sbjct: 650 MIDDFIERKWGRRAVEYILPDLEGLLRETLGVIVYQEQVMQISSVIAGYSLGGADLLRRA 709

Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
           MGKK  EEM KQ++ F+SGA+     K  A  +F+L+ +FA YGFNKSH+AAYA+++Y T
Sbjct: 710 MGKKNAEEMAKQRDLFMSGAAAKKHPKDKAGQLFDLMEQFAGYGFNKSHSAAYALLAYHT 769

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
           A++KTHYPVEF+AA +T E    E + K+  + R+  I + PP V     +F    + I 
Sbjct: 770 AYLKTHYPVEFMAALLTSETSKPENVVKYISECRELGITVQPPDVQISDANFTPAGDVIR 829

Query: 837 YSLAAIKGVGTTT------ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
           + L AIK VG         AR  ++A     F SL DFC +V+ K LN+RV ESL+ AGA
Sbjct: 830 FGLTAIKNVGGNAIECIIKARRELQAEGKTGFTSLWDFCEKVELKLLNKRVFESLIKAGA 889

Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-------LEKF 943
           +D FG  R ++  ++D   + AQ  +++       +F    G F    T       L + 
Sbjct: 890 MDSFG-PRARVFVAVDGAMERAQKSQRDAAAGQHGLF----GIFDSGPTDVSPQDDLPQV 944

Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
           +  +   R +NE+ VLGF+ SGHP+D Y+  LR M +
Sbjct: 945 AEWDEHTRLQNEKEVLGFFVSGHPMDKYREKLRNMKV 981


>gi|288574785|ref|ZP_06393142.1| DNA polymerase III, alpha subunit [Dethiosulfovibrio peptidovorans
            DSM 11002]
 gi|288570526|gb|EFC92083.1| DNA polymerase III, alpha subunit [Dethiosulfovibrio peptidovorans
            DSM 11002]
          Length = 1145

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/1049 (38%), Positives = 631/1049 (60%), Gaps = 51/1049 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  +FVHL VH+ YSLL+GA+    +  +      PA+AI+D   ++  +EF Q    
Sbjct: 1    MTKEKNFVHLHVHTEYSLLDGAIRCKELARRAKEWGMPAVAISDHGVMYGVIEFYQACKD 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIGC++ +  +       + +   P +  ++LL     GY  L++LVS +   D 
Sbjct: 61   EGIKPIIGCEIYVAPEG----IEEKRKENP-INHLLLLAENDVGYHNLVKLVS-IANTDG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 R+    L    +EG+I  +   +G I +       + A  R   ++ +FG D  +
Sbjct: 115  FYYKPRVDHDLLSRY-SEGIIACSACLAGEIPQLLIAGEDEKALDRANLYRDIFGEDNFF 173

Query: 184  VNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVS 241
            + +Q  H  +       +++++  H  PLVAT +S ++++EDY+ H++L+ V  +ST+  
Sbjct: 174  LEIQYNHIPHQAVVNKGLIEMSRKHGFPLVATTDSHYMNKEDYDWHEILLCVGTNSTLDD 233

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRC--SFILQVHAPILPRFIEK 298
             K     T D YL++  EM  IF D +PEALENT++IA RC  SF L      LP+F   
Sbjct: 234  PKRMSFETNDFYLRSAEEMWQIFGDDVPEALENTLKIAERCDVSFDLGTREYKLPQF--- 290

Query: 299  ECDDIQKEE--ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
               DI + E  E+ L   A  GL+ RL    +       +YR+RL++EL+VI +M F GY
Sbjct: 291  ---DIPEGETLESFLEKSAFDGLKERLKGAPLT-----DEYRRRLEYELSVINQMGFPGY 342

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLI+AD IQ  K+  IP+GPGRGS AGS+ AYA+ IT++DP+++ L+FERFLNP+R++MP
Sbjct: 343  FLIIADVIQACKERGIPIGPGRGSAAGSLVAYAMKITELDPIKYGLIFERFLNPERVTMP 402

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D D     R+++++YV  KYG E V+QIITFG ++ KAA++DVGRA+ +PY++VDR+ 
Sbjct: 403  DIDTDVSDKGREDLLKYVVEKYGVENVSQIITFGRMKTKAAIKDVGRAMGIPYAEVDRVA 462

Query: 477  KLIPNDPAHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            KL+P+       +++IAD        +E R  DP +  LLE + K+EGL RH S HAAG+
Sbjct: 463  KLVPD------GVKSIADAISLTPDLKEIRDKDPKMRTLLESAAKIEGLARHCSQHAAGV 516

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI   PL+ LVP+ R +  +  VTQF+M+ +E+ GL+K DFLGL+TL++L+++L+ +   
Sbjct: 517  VITPMPLTDLVPV-RKIGENQVVTQFSMEPVERLGLVKMDFLGLQTLSILEEALENIKTN 575

Query: 593  GVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            G +  +L+ +P DD  T+ +L    TLG+FQLES+GMR+ L+ M PD  ED+IA+++LYR
Sbjct: 576  GKEPPNLNELPMDDQSTFKMLQAGDTLGVFQLESAGMRRLLKKMLPDSFEDVIAVLALYR 635

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+++ ++  Y   K+G+ K   +HP+++ +LKET GVI+YQEQVM+ A  L+GY+L  
Sbjct: 636  PGPLESGMLDQYVECKHGRAKAHYLHPMLEDVLKETHGVILYQEQVMKCASTLAGYTLGG 695

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  E M++Q+  F+SGA K G+ K  A  IF+++ KFA YGFNKSH+AAY
Sbjct: 696  ADLLRRAMGKKKVEVMNEQRAIFLSGAEKQGVDKAKADEIFDIIQKFAGYGFNKSHSAAY 755

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI-KKFCQDARQFNIQIMPPSVNTPCVDF 828
            A+ISYQTA++K HY  EF+AA +T ++ + + +   + ++ R+  I ++PP VN     F
Sbjct: 756  ALISYQTAYLKAHYDREFMAAYLTSQIGSKKDVMAAYVREVRKSGIPVLPPDVNQSRSAF 815

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               +N I + L A+  VG+     I++A  +  PF  L DF  RVD + LN+ V+E+L+ 
Sbjct: 816  TAAENVIRFGLEAVGKVGSGAVEAIIKAREEGGPFKDLWDFLDRVDVRCLNKGVMENLIK 875

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGA D    +R QL++S   +  YA  +++       ++F   E     D + +E + ++
Sbjct: 876  AGAFDSISPNRRQLMESFPAMMDYA--LKRGCDGDQCSLFGEQEAAVHPDMVEVEDYDIQ 933

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR--LAAMVVSK 1004
                + E E+  +G Y SGHP + Y+    +  +      +   R   +    A M+V  
Sbjct: 934  E---KLEMEKSAIGMYISGHPFERYEEKASRY-VNCTISDLELWRSEKVSPCFAGMLVES 989

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +K T++G  +G + F + + E EA  FP
Sbjct: 990  VEKYTKRGEPMGILRFEDCSGEIEAVCFP 1018


>gi|118602780|ref|YP_903995.1| DNA polymerase III, alpha subunit [Candidatus Ruthia magnifica str.
            Cm (Calyptogena magnifica)]
 gi|118567719|gb|ABL02524.1| DNA polymerase III, alpha subunit [Candidatus Ruthia magnifica str.
            Cm (Calyptogena magnifica)]
          Length = 1144

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/1051 (38%), Positives = 622/1051 (59%), Gaps = 60/1051 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + +FVHL   S +S+    + +  +++K+      +IA+TD +NLF+A++F QKA  A I
Sbjct: 3    NSNFVHLHCQSEFSVENSLIRIPKLIEKVQEIGMNSIALTDESNLFTAVKFYQKATIANI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G +++I  ++                S++LL    +GY  L EL+S  Y   QG+ 
Sbjct: 63   KPIFGARINIKDKEG------------EFYSVLLLCQDYQGYLNLSELISLSYT--QGRS 108

Query: 128  SVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               + ++  Q I   +GLIM+       + +    N    A+++   ++ +  +R Y+++
Sbjct: 109  FECVSVTQQQLIDHNQGLIMIATPIYSDVAKYLISNQMIEAKQKAEFWQTILVERYYLSV 168

Query: 187  QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR  R +D       V+LA   ++ +VATN+  FL+E D++AH+  + ++   ++    R
Sbjct: 169  QRTSREFDEEHLHLCVKLALELDIAVVATNDVQFLNESDFDAHEARICISQGGLLDDVRR 228

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP-ILPRFIEKECDDI 303
             +  +   +LK+  +M  +FSDLPE LENT+EIA+RC+   ++     LP F   +   I
Sbjct: 229  EKHFSNQQFLKSSEQMHELFSDLPEILENTLEIAKRCNVHFKLFKKNYLPDFPVPKDLTI 288

Query: 304  QK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            ++   EE+E       GL  RL    +        Y QRL FELNVI +M F GYFLIVA
Sbjct: 289  ERFFCEESE------HGLVQRLQNLKV----DTLVYYQRLKFELNVIIQMGFPGYFLIVA 338

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+W+K+N+IPVGPGRGSGAGS+ AY L IT++DP+R  LLFERFLNP+R+SMPDFDID
Sbjct: 339  DFIRWSKENDIPVGPGRGSGAGSLVAYVLGITNVDPIRHELLFERFLNPERVSMPDFDID 398

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI YV  KYG+++V+QIIT+G++ AK  +RDVGR L  PY   D++ K+IPN
Sbjct: 399  FCTDRRDEVIDYVAKKYGYKKVSQIITYGTMAAKGVVRDVGRILGHPYGFSDKISKMIPN 458

Query: 482  DPA----HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            D        +S          R    ++ SV  L+++S++LEGL R+  THA G+VI   
Sbjct: 459  DLKMTLEKALSKPEEGGSEELRARYDSEESVTALIDLSKQLEGLVRNVGTHAGGVVIAPS 518

Query: 538  PLSQLVPMYRDV-RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
             +S   P+Y+    +D  V+QF+   IE  GL+KFDFLGL  LT++ K++  ++ +G+  
Sbjct: 519  KISDFCPVYKGYGENDGVVSQFDKDDIEAIGLVKFDFLGLSNLTVIHKTVKLISAKGLSN 578

Query: 596  --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              +DL  +P DD + Y LL    T GIFQLES GMR  L+ +Q D  EDI+A+++LYRPG
Sbjct: 579  EPIDLDALPLDDKKVYELLQRCDTTGIFQLESEGMRSYLKKLQADNFEDIVAMLALYRPG 638

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D  +V  Y N K+G + +   HP+++ +LK T GV +YQEQVM+ AQ+++GYSL  AD
Sbjct: 639  PLDAGMVDDYINVKHGAQ-VKYPHPMLEQILKPTNGVFLYQEQVMKSAQVMAGYSLGGAD 697

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM +Q+  F+ GA++ GI +  A  IF+L+ KF+ YGFNKSH+ AYA 
Sbjct: 698  LLRRAMGKKKDSEMSRQRSVFVKGAAEKGIDEKKANEIFDLIDKFSGYGFNKSHSVAYAY 757

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SY TAW+K+H+P  F+AA ++  MDN ++I     + R+  + +  P+V     +F + 
Sbjct: 758  VSYHTAWLKSHHPAPFMAAVLSGMMDNTDRISFTISEVRKMGLVVNGPNVCESNYEFSIN 817

Query: 832  DNR-IYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D + + Y L AIKGVG       + E + +  + SL +FCSR++ + LN+R +E+L+++G
Sbjct: 818  DEKTVAYGLGAIKGVGGALVDALVFERNTNGVYKSLFEFCSRIEKRYLNKRAIEALIYSG 877

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A D  G  R  L+++     + A+        K  + F+ +KG FS+     ++ +   S
Sbjct: 878  AFDVLGVDRASLIKTYPIAIRQAE-------QKQNDYFSGQKGLFSNIEQHNEYEMNYLS 930

Query: 950  V-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMV 1001
                    R + E+ VLG+YF+ HP D YK  L+ +G      S    R N ++R+ A++
Sbjct: 931  ASSFSFKERLQLEKSVLGYYFNDHPTDEYKTDLKHIG--AILPSKIVFRNNKDMRILALI 988

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               + + T+ G +I  +T  + AK   A  F
Sbjct: 989  SELRYRATKSGGQIALITVEDGAKLLNAVIF 1019


>gi|330998876|ref|ZP_08322603.1| DNA polymerase III subunit alpha [Parasutterella excrementihominis
            YIT 11859]
 gi|329576090|gb|EGG57609.1| DNA polymerase III subunit alpha [Parasutterella excrementihominis
            YIT 11859]
          Length = 1148

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1029 (37%), Positives = 606/1029 (58%), Gaps = 62/1029 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+ +G L+   ++ K  A    A+AITD   +F  + F + A AAGI+PI
Sbjct: 5    FVHLRMHTEFSIKDGMLNPKKVVHKAIASGMKALAITDATAMFGDVIFYKAASAAGIKPI 64

Query: 71   IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +G    I    +  D L++              + L    +GY  L +L+SR +L +Q K
Sbjct: 65   LGADCSITNHYNRDDYLRL--------------LFLARNHQGYLTLCDLLSRAWLTNQYK 110

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                + L W+     +GLI+L+G ++G I +A    SS  AE+      + F    ++ L
Sbjct: 111  DRGEVDLDWITPEMADGLIVLSGFNTGAIGKAILNGSSSAAEQEARRLSQKF-PHFFMEL 169

Query: 187  QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR  R  D    ++ V+LA    LP+VAT    F + ED+E H+  +A+A    ++ K R
Sbjct: 170  QRVGRPNDEMLIAESVKLAKKLGLPVVATQPIQFENPEDFEFHEARVAIADGFTLANKAR 229

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR+ TP  Y + + EM  +F D+P A+EN+VEIA+RC+  +++  P LP F   +   ++
Sbjct: 230  PRIYTPQQYFRTKEEMCELFKDIPSAIENSVEIAKRCNVTIKLGKPQLPIFPTPDGMSLK 289

Query: 305  KEEENELRNKAVAGLEVRLA---------QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                + +   A  GL+ RL          + A  +      Y++RL+ E+ +I  M F G
Sbjct: 290  ----DYMAQLAREGLDRRLKVLYPDEKKREAAFPR------YKERLEREIKIIQDMDFPG 339

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SM
Sbjct: 340  YFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLGITDLDPLAYDLLFERFLNPERVSM 399

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFD+DFCQ+ R  VI YV++KYG E V+QI TFG++ AK  ++DVGR L M YS+ DRL
Sbjct: 400  PDFDVDFCQNNRGRVIEYVKSKYGEESVSQIATFGTMGAKGVIKDVGRVLDMSYSEADRL 459

Query: 476  CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             ++IP  P H  +L+ A++++ +FR     +P   +L+E + KLEG  R    HA G++I
Sbjct: 460  SRMIPTRPGHNTTLEEALSEEPQFRAEVRNNPQARKLIEYALKLEGTTRSLGIHAGGVLI 519

Query: 535  GDRPLSQLVPMYRDVRSDLP---VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
                L    P+Y      LP   ++ ++ K +E  GL+KFDFLGL TLT+++++LD++ +
Sbjct: 520  APGKLIDFCPLY--AAGMLPENVISMYDKKDVEAVGLVKFDFLGLTTLTIIERALDYIEK 577

Query: 592  R-GVKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
              GV+ D+  +  DD +TY  +  T  T+ +FQ ES GM + L   +P  + D+IAL +L
Sbjct: 578  NIGVRPDIEHMECDDEDTYKKIFQTGDTVAVFQFESPGMHKLLIDAKPTQLSDLIALNAL 637

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP+D I  + + + G++K     P + P+L++T G+++YQEQVM +AQ + GYSL  
Sbjct: 638  YRPGPMDLIPDFLDIRAGRKKAEYADPRLIPILEDTAGIMVYQEQVMLVAQKIGGYSLGG 697

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK   EM++Q + FI GA+KNG+S+ +A ++FEL+ KFA YGFNKSHAAAY
Sbjct: 698  ADILRRAMGKKDVAEMERQSKVFIEGAAKNGVSEEVAAHLFELMRKFAGYGFNKSHAAAY 757

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            + ++Y+T W+K +YP EFLA+S++  M + EK  K   DA++ +++++ P +N    ++ 
Sbjct: 758  SYVAYKTGWLKNYYPAEFLASSLSEVMTDPEKSLKILMDAKRHSVKLLGPDINESEFNYT 817

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                  I   L A+KGVG+  A  I  E   + PF    D   RV S+ + +++++    
Sbjct: 818  SPKTMEIRMGLGALKGVGSAPAEAIKAEREQNGPFKDPFDLVKRVGSQLITKKIIQVFAM 877

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AG  D    +R +  ++ D + + AQ  E  +     ++F  E    S+++ +++ +  +
Sbjct: 878  AGVFDSIEPNRRKWFENADVVVQSAQ--ENEKAADQFSLFGEEP---SNEVPIKEVAPWS 932

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN---IRLAAMVVSK 1004
               R E EQ VLGFYFSGHPL+ Y+  L+    + +   VA     N     +A M +  
Sbjct: 933  DRTRMEKEQYVLGFYFSGHPLEAYQSELK----RNFGALVAGTESENPGEYLVAGMYLGC 988

Query: 1005 QQKKTRKGS 1013
            +Q++ + GS
Sbjct: 989  EQRRGKDGS 997


>gi|315636761|ref|ZP_07891990.1| DNA-directed DNA polymerase III alpha subunit [Arcobacter butzleri
            JV22]
 gi|315478978|gb|EFU69682.1| DNA-directed DNA polymerase III alpha subunit [Arcobacter butzleri
            JV22]
          Length = 1187

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/1052 (38%), Positives = 611/1052 (58%), Gaps = 56/1052 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL +H+ YSLL+GA  +  +  K+      ++A+TD  N+F A+ F       GI+
Sbjct: 5    PQFTHLHLHTEYSLLDGANKIKPLAKKLKKLGMTSVAMTDHGNMFGAIAFYNAMRDEGIK 64

Query: 69   PIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIG +  I + +D    TN+ +        + L      GY+ L+ L S+ Y+ +    
Sbjct: 65   PIIGMEAYIHNSEDISDKTNRQRY------HLCLYAKNEIGYKNLMYLSSQAYI-NGFYY 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKL 177
              RI    L+E  +EGL+       G I        +R   F +   + A+K  L +K++
Sbjct: 118  YPRINKKILKE-NSEGLVCSAACLQGEINWHLNTQSERNVKFGAKGYEEAKKIALEYKEI 176

Query: 178  FGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            FGD  Y+ + RH   D+ + + Q+++L+    + +VATN++ +L ++D +AH+  M +A 
Sbjct: 177  FGDDFYLEIMRHGISDQLFVDDQILKLSKETGIKVVATNDTHYLEQKDADAHEAFMCIAM 236

Query: 237  STVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
            + +    +R R +  + YLK+  ++  ++SD+PEA+E T EIA +C+  +++  P  P F
Sbjct: 237  NKLYDDPNRLRHSVHEFYLKSPEQIAKLYSDIPEAIEATQEIADKCNLTIKLGNPTPPNF 296

Query: 296  I-----EKECDDIQKEEENE--LRNKAV-------AGLEVRLAQGAIAKGYHAQDYRQRL 341
                   +E   I  E E E  L N  +        GLE RL    I    H Q+YR RL
Sbjct: 297  KFTRQKSQEAGLILPEPELEYSLENDKILFIHECRIGLEDRLK---IVPTEHHQEYRDRL 353

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + E+ +I  MKF GY LIV DF+  AK+  IPVGPGRGS AGS+ A++L ITDIDP+ + 
Sbjct: 354  EVEIEIINNMKFPGYMLIVWDFVIVAKRMGIPVGPGRGSAAGSLVAFSLKITDIDPIPYG 413

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPD D+DFCQ RR E+I YV  +YG   VAQIITFG L AK  +RDV
Sbjct: 414  LLFERFLNPERVSMPDIDMDFCQSRRGEIIDYVVQQYGRANVAQIITFGKLLAKGVIRDV 473

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             R L MPYS+ D + KLIP++    +   +   + + +E   ADP   R+ E +  LEGL
Sbjct: 474  ARVLDMPYSKADAMAKLIPDELGIDLK-NSWEKEPKIKELCEADPQAARVWEYALALEGL 532

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R+A THAAG+VI + PL +  P+++    D   TQ+N K+IE   LIKFDFLGLKTLT+
Sbjct: 533  NRNAGTHAAGVVISNEPLWKKTPLFKPSGLDTLATQYNGKYIEDVDLIKFDFLGLKTLTV 592

Query: 582  LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++++   + QR G +V+      +D   Y L+ T  T+G+FQ+ES GM+   + ++P   
Sbjct: 593  IEEANKLIEQRHGKRVNFITTDVNDKGVYDLIQTGNTIGLFQIESDGMQDLCKRLKPSNF 652

Query: 641  EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLID----PMLKETQGVIIYQEQ 694
            EDIIA+++LYRPGP+++ ++  +  RK+G+ KI   H  ++    P+L+ T GVI+YQEQ
Sbjct: 653  EDIIAVLALYRPGPMESGMLDDFIERKHGRAKIDYFHDELESALKPILENTYGVIVYQEQ 712

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VMQI Q + G+SL  AD++RRAMGKKIKEEMD+ K  F  GA   G ++  A  +F+L+ 
Sbjct: 713  VMQIVQSVGGFSLGGADLVRRAMGKKIKEEMDRLKGEFADGAQNKGYTRAYAEELFDLIV 772

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
            KFA YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE DN +K+ K+  + ++  +
Sbjct: 773  KFAGYGFNKSHSAAYALVTFYTSYLKCYYPAEFMAALLTLEKDNTDKVVKYVDETKRLGL 832

Query: 815  QIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
            ++ PP +N   + F      G   + + + AIKG G      I+ A  + PF  L DF S
Sbjct: 833  ELFPPDINKSDLVFSAKKIDGKEVVMFGMGAIKGAGDVAINAILNARGNAPFKDLPDFIS 892

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH---ENIF 927
            R+D  K+N+RV+ESL  AGA D FGY+R  L   L+ I+K    V K  T K     ++F
Sbjct: 893  RIDGSKVNKRVIESLTKAGAFDSFGYTRKSL---LNQIEKIVDTVGKAATAKKMMTGSLF 949

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +      I LE  +  +     E E+  LGFY SGHPLD YK  L K+      +  
Sbjct: 950  GDSEELTKIDIELEHLNEFDPKELLEFEKATLGFYVSGHPLDEYKKDLEKINFTLSSQID 1009

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
                G+       + S  +K ++KG++ G V+
Sbjct: 1010 ELEDGSQALFVGKIESITEKTSKKGNKFGIVS 1041


>gi|261381235|ref|ZP_05985808.1| DNA polymerase III, alpha subunit [Neisseria subflava NJ9703]
 gi|284795857|gb|EFC51204.1| DNA polymerase III, alpha subunit [Neisseria subflava NJ9703]
          Length = 1144

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1044 (39%), Positives = 597/1044 (57%), Gaps = 72/1044 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+++G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSIIDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q    +   A+   +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DYLVKLSNE-------GLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KL
Sbjct: 407  DVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466

Query: 479  IPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   P+SL+ A+  + + +E   A+   D L+ +++KLE L R    HA G++I   
Sbjct: 467  IPLEANKPLSLEKAMEAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K  
Sbjct: 526  KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYR
Sbjct: 581  TGDIVDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+DNI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD
Sbjct: 641  PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+
Sbjct: 700  LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F   
Sbjct: 760  ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             N +I Y+L AIKG G      I+ A  +   F  L DFC RV  + +NRR LE+L+  G
Sbjct: 820  PNMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943
            A D    +R  LL ++D           N   K  N  A++ G F       + + L   
Sbjct: 880  AFDSIEPNRAMLLANID-------LAMNNADQKAAN--ANQGGLFDMMEDAIEPVQLIDA 930

Query: 944  SVENSSVRFENEQRVLGFYFSGHPL-----DVYKPILRKMGIKGYEESVATIRGNNIRLA 998
            S+ + S +   E+ V+GFY SGHP      +V++    K+G    ++SV        RLA
Sbjct: 931  SMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVHQIAPTKLGRLKPQDSV--------RLA 982

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSE 1022
              V + +    ++G +I +V+  +
Sbjct: 983  GFVTAVRTMMGKRG-KIAFVSLED 1005


>gi|318041279|ref|ZP_07973235.1| DNA polymerase III subunit alpha [Synechococcus sp. CB0101]
          Length = 1178

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/1066 (38%), Positives = 606/1066 (56%), Gaps = 61/1066 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +      ++P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPAMVKRAEELGMPALALTDHGVMYGAIELLKLCKGTAVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPS------IVLLVSTAEGYQRLIELVSRMYLLD 123
            IIG ++ +           G    P  P       +V+L   A GY+ L++L S  +L  
Sbjct: 62   IIGNEMYV---------INGSIDDPNPPKKERRYHLVVLAKNAVGYRNLVKLTSISHLRG 112

Query: 124  QGKQSV--RICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
               + +  R C+     E  +EGLI+ T    G + +A       VA      ++ +FGD
Sbjct: 113  MRGRGIFSRACIDKPTLEQYSEGLIVATACLGGELSQAILRGRPDVARDVARWYQGVFGD 172

Query: 181  RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ +Q H    DR    ++V+++    +PL+ATN++ +L+  D EAHD L+ +    +
Sbjct: 173  DFYLEIQDHGSPEDRIVNVELVRISQELGIPLIATNDAHYLTSNDAEAHDALLCILTGKL 232

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILP 293
            V+ + R R T   Y+K   EM+++F+D      + EA+ NT  +A +      +    +P
Sbjct: 233  VTDEKRLRYTGTEYIKGEQEMLALFADHLEPEVVAEAVANTARVAEKVEDYDILGRYQMP 292

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            RF   E         + LR  +  GL  RL            +Y +RL FEL V+ +M F
Sbjct: 293  RFPIPEG----HTPVSYLREVSEQGLRARLQ--LPENEVFTPEYGERLTFELQVMEQMGF 346

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL+V D+I++A++N IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R 
Sbjct: 347  PTYFLVVWDYIRFARENGIPVGPGRGSAAGSLVAYALGITNIDPVTNGLLFERFLNPERK 406

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD D DFC +RR EVI YV  +YG E+VAQIITF  + +KA L+DV R L +PY   D
Sbjct: 407  SMPDIDTDFCIERRGEVIDYVTRRYGEEKVAQIITFNRMTSKAVLKDVARVLDIPYGDAD 466

Query: 474  RLCKLIPNDPAHPVSL-QAIADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            RL KLIP     P  L + I D+S    FRE    DP V R ++++ ++EG  +    HA
Sbjct: 467  RLAKLIPVVRGKPAKLKEMIGDESPAPEFREKYQNDPQVKRWVDMAMRIEGTNKTFGVHA 526

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            AG+VI   PL ++VP+ R+    + +TQ+ M+ +E  GL+K DFLGLK LT++ K++D +
Sbjct: 527  AGVVIAADPLDEVVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTIDLV 585

Query: 590  AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q  G KVD   +P DD  TY LL      GIFQLESSGMRQ +  ++P  +EDI ++++
Sbjct: 586  EQSTGQKVDPDALPLDDPGTYGLLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILA 645

Query: 649  LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            LYRPGP+D  ++  + NRK+G+E I   H  ++P+L+ET G+++YQEQ+M+IAQ L+GYS
Sbjct: 646  LYRPGPLDAGLIPKFINRKHGREAIDFAHAKLEPILQETYGIMVYQEQIMRIAQDLAGYS 705

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L EAD+LRRAMGKK K EM+K +  F+ GA++ G+   IA  +FE +  FA+Y FNKSH+
Sbjct: 706  LGEADLLRRAMGKKKKSEMEKHQSIFVKGATERGVDSKIAEALFEQMVLFAEYCFNKSHS 765

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
             AY  ++YQTA++K HYPV ++AA +T+     +K++++  +     I++MPP VN   +
Sbjct: 766  TAYGAVTYQTAYLKAHYPVAYMAALLTVNAGTTDKVQRYISNCNAMGIEVMPPDVNASGI 825

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            DF    +RI + L+A++ +G    R ++EA SAD PF SL D C R+    LNRR LESL
Sbjct: 826  DFTPVGDRILFGLSAVRNLGDGAIRALLEARSADGPFRSLADLCDRIPGTTLNRRSLESL 885

Query: 886  VFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            +  GALD      +R QL+  LD I  +A    ++R +   N+F    G  +D +     
Sbjct: 886  IHCGALDALEPQANRAQLMADLDLIVDWASSRARDRASGQGNLFDLMGGGSADAVADAAG 945

Query: 944  SVENSSV-------------RFENEQRVLGFYFSGHPL-DVYKPI--LRKMGIKGYEESV 987
            S + S+              +   E+ ++GFY S HPL  + +P+  L  +G+   EE  
Sbjct: 946  SGDLSTAPKAAPVPDYPPTEKLRLEKDLVGFYLSDHPLKQLTRPVQLLSPVGLGSLEEQA 1005

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               R   + +  MV   +   TRKG R+  +   + +   EA  FP
Sbjct: 1006 DKTR---VSVVGMVAGLRPVTTRKGDRMAVLQLEDLSGSCEAVVFP 1048


>gi|323705009|ref|ZP_08116585.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
            xylanolyticum LX-11]
 gi|323535435|gb|EGB25210.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
            xylanolyticum LX-11]
          Length = 1144

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/1058 (38%), Positives = 617/1058 (58%), Gaps = 63/1058 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G+  +  ++ +       +IAITD   ++ A++F ++A + G++PI
Sbjct: 2    FVHLHVHSEYSLLDGSCRIKELIKRTKELGMNSIAITDHGVMYGAIDFYKEAVSYGVKPI 61

Query: 71   IGCQLDIDMQ---------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            IGC++ +  +         DNL               ++LL     GY+ L+++VS+  +
Sbjct: 62   IGCEIYVSPRSLYDKEYGIDNLNY------------HLILLCKNMTGYENLMKIVSKASI 109

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD- 180
             D      RI   +L+E  +EGLI L+    G I      +  + A++  + +  +FG  
Sbjct: 110  -DGFYYKPRIDHQYLKE-HSEGLIALSSCLGGEIPSYLISDDYEKAKETAIFYNSIFGTG 167

Query: 181  RLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQ H    + +  S++++L+    +PLVATN+  +L +ED+ AH+VL+ +     
Sbjct: 168  NFYLELQYHGLSQQEKVNSELIKLSQELNIPLVATNDVHYLKKEDHLAHEVLLCIQTGKN 227

Query: 240  VSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +   DR     D  YLK+  EM  +FS   EALENTV+IA  C+   + +   LP+F   
Sbjct: 228  MDDSDRMSFPTDQFYLKSPDEMYEMFSYCKEALENTVKIADMCNLEFEFNKTKLPKF--- 284

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E  D  K +E  LR   + GL  R             +  +RL++EL+VI +M +  YFL
Sbjct: 285  EVPDGMKSDEY-LRKLCIDGLYKRYPNPT-------DEVMERLNYELSVIEKMGYVDYFL 336

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI++A+ N I  GPGRGS AGS+ AY L IT IDP++++LLFERFLNP+R+SMPD 
Sbjct: 337  IVWDFIKFARDNGIMTGPGRGSAAGSLVAYCLGITKIDPIKYNLLFERFLNPERVSMPDI 396

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC +RR EVI YV  KYG +RVAQIITFG++ A+AA+RDVGRAL  PY++VD + K+
Sbjct: 397  DSDFCYERRQEVIDYVVKKYGEDRVAQIITFGTMAARAAIRDVGRALNFPYAEVDVIAKM 456

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP +    +  +AI  +   ++    D  + RL++IS+ LEGL RHASTHAAG+VI   P
Sbjct: 457  IPFELGMTID-KAIELNPELKDKYEKDEKIRRLIDISRSLEGLPRHASTHAAGVVISSEP 515

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L + VP+ ++  S   VTQF M  +E+ GL+K DFLGL+TLT+++ +LD + + RG+ VD
Sbjct: 516  LVKYVPLQKNEGS--IVTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLDIVKETRGIDVD 573

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  I F+D E Y L++   T G+FQLESSGM+Q +  ++P+ +ED+IA +SLYRPGP+D 
Sbjct: 574  IDSIDFEDKEVYALISRGDTEGVFQLESSGMKQFMTELRPEKLEDVIAGISLYRPGPMDQ 633

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y   KN  E I   HPL+ P+L  T G ++YQEQVMQI + L+GYSL  +D++RRAM
Sbjct: 634  IPRYIENKNNPENIKYEHPLLKPILDVTYGCMVYQEQVMQIVRDLAGYSLGRSDLVRRAM 693

Query: 718  GKKIKEEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
             KK  + M+++++ FI             GA   G+ +  A  +F+ +  FA+Y FNKSH
Sbjct: 694  AKKKMKVMEEERKNFIYGIKDENGNYVVPGAVNRGVDEATANRLFDEMIDFANYAFNKSH 753

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AAAYAV+++QTA++K +YPVEF+AA +   +DN +K+  + Q  ++  IQI+PP +N   
Sbjct: 754  AAAYAVVAFQTAYLKRYYPVEFMAALLNSFVDNTDKVAFYVQVLKKIGIQILPPDINESY 813

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V + +I + LAA+K VG      I+E    +  + S+ DF  R+D  +LN++ +ES
Sbjct: 814  SYFTVVNGKIRFGLAAVKNVGLNATLEIVEDRKKNGRYTSIIDFFERIDEMQLNKKAVES 873

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ AGA D FG  R QLL   + I +      +       ++F  +  +     +L    
Sbjct: 874  LIKAGAFDSFGVYRSQLLAVYEGIMESIHRSREKNIKGQMSLFESDSESHKIDYSLPDIK 933

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG------IKGYEESV---ATIRGNNI 995
              +  V    E+  +G Y SGHPLD Y+  +R++       +K  ++S    +     ++
Sbjct: 934  EFSKGVILSMEKETMGLYISGHPLDEYQDDIRRIANCTTRDLKNSDDSFVKKSAFDDQDV 993

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             L  +V SK+ K T+  + + +V  ++     E   FP
Sbjct: 994  VLVGIVESKKIKFTKNNNMMAFVNLADLYGTIEVIVFP 1031


>gi|255319195|ref|ZP_05360412.1| DNA polymerase III subunit alpha [Acinetobacter radioresistens SK82]
 gi|262379698|ref|ZP_06072854.1| DNA polymerase subunit III [Acinetobacter radioresistens SH164]
 gi|255303588|gb|EET82788.1| DNA polymerase III subunit alpha [Acinetobacter radioresistens SK82]
 gi|262299155|gb|EEY87068.1| DNA polymerase subunit III [Acinetobacter radioresistens SH164]
          Length = 1188

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/1014 (39%), Positives = 597/1014 (58%), Gaps = 50/1014 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++     D+ PA+A+TD +NL +A++F  K    GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRVPDLVKAAQKDEMPALALTDLSNLHAAVKFYGKCLGKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++  ++ +MT              LL  T  G++ L ELVS  Y+  +G+Q   
Sbjct: 63   LGSEIRLNDAEH-RMT--------------LLAMTNTGWRNLTELVSEGYI--RGQQLDI 105

Query: 131  ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             C+   W+ +   + LI L G +S  + +    ++ Q AE  L  +   FG+R+Y+ L R
Sbjct: 106  PCVQKEWILD-QNQDLIALLGMNSD-VGKMLITSNPQKAEPLLEEWIAKFGNRVYLALTR 163

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                G D +   + V+LA  + + +VA N+  F++ +D+EAH+  + +A   V+    RP
Sbjct: 164  TNRPGEDDFI-IEAVKLAQKYNIGVVAHNDVHFMTRDDFEAHEARVCIADGYVLGDNRRP 222

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  +P+ Y K+  EM  +FSD+P A+ENT  IA+RC+  LQ+    LP +   E   I  
Sbjct: 223  KTYSPEQYFKSSEEMTELFSDIPSAIENTYHIAKRCNVTLQLGKYFLPDYPIPEGYTI-- 280

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
              +    + +  GLE RL           Y  +    Y +R+++E+N+I  M F GYFLI
Sbjct: 281  --DTFFAHLSKEGLEERLNFLYPPEERDEYWPEIRKPYDERIEYEINIINSMGFPGYFLI 338

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD
Sbjct: 339  VMDFIQWSKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYELLFERFLNPERVSMPDFD 398

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC   RD VI YV   YG + V+QI TFG++ AK A+RDV R L   Y   DR+ KLI
Sbjct: 399  VDFCIAGRDRVIDYVARTYGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKLI 458

Query: 480  PNDPAHPVSLQAIADDSRFRE--ARLADPSVD---RLLEISQKLEGLYRHASTHAAGIVI 534
            P  P      +++  + + ++     ++P  D    + E++ KLEG+ R+   HA G+VI
Sbjct: 459  PTKPLGLSLEESLQAEPQLKDIVTNPSNPDYDDASEIWEMALKLEGITRNTGKHAGGVVI 518

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-- 592
                ++    +  D      V QF+   +E AGL+KFDFLGL+ LT+++ ++  + +R  
Sbjct: 519  SPTKITDFSAVMCDADGTARVAQFDKDDVEAAGLVKFDFLGLRNLTVIEDAVKNINKRIK 578

Query: 593  -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +D++ IP +D + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYR
Sbjct: 579  SDKPLDIAAIPLEDKDAYLVFANANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYR 638

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+D I  + +R +G E    +HPL++ +L+ T G+++YQEQVMQ AQ  +GY+L  AD
Sbjct: 639  PGPMDLIPDFIHRMHGGE-FEYLHPLLEGVLEPTYGIMVYQEQVMQAAQYCAGYTLGGAD 697

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ++ FI GA+K  I +  A +IF+ + KFA YGFNKSHAAAYA+
Sbjct: 698  LLRRAMGKKKPEEMVKQRKIFIEGAAKKDIDEATANHIFDYMEKFAGYGFNKSHAAAYAL 757

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTAW+K HYP EFLAA M+ EM N + +     D R+ N++++PPSVN     F   
Sbjct: 758  VAYQTAWLKAHYPAEFLAAVMSSEMQNTDNVVFLIDDCRKNNLEVLPPSVNMSIYQFHAI 817

Query: 832  DNR-IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D + I Y L AIKGVG    + ++++   + P+  L DFC R+D KK+N+R LE+L+ AG
Sbjct: 818  DEKTIVYGLGAIKGVGEAAMQSVIDSRNQQGPYKDLFDFCHRIDLKKINKRTLEALIRAG 877

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENS 948
            ALDC G  R  L+  L    + A    +NR     ++F   E+        ++ +S E  
Sbjct: 878  ALDCLGIERADLMAQLPEAVQAADQARQNRETGIMDLFGEVEEIQRKPAKPVKPWSDE-- 935

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             VR + E+  LG Y +GHP++VY+P L+        E   T RG     A +V+
Sbjct: 936  -VRLKGEKDTLGLYLTGHPINVYRPELKSFVPSRLNELTPTRRGVTTVFAGLVI 988


>gi|325135612|gb|EGC58229.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M0579]
          Length = 1144

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/1041 (38%), Positives = 597/1041 (57%), Gaps = 54/1041 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q       +     +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DYLIKLSNE-------GLQERMVQLYPDEAERAAKMPEYQKRLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KL
Sbjct: 407  DVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466

Query: 479  IPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   P+SL+ A+  + + +E   A+   D L+ +++KLE L R    HA G++I   
Sbjct: 467  IPLEANKPLSLEKAMETEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596
             +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + D +    G  +
Sbjct: 526  KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKNTTGDII 585

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+D
Sbjct: 586  DVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMD 645

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            NI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRA
Sbjct: 646  NIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRA 704

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQT
Sbjct: 705  MGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQT 764

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRI 835
            AW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +I
Sbjct: 765  AWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKI 824

Query: 836  YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y+L AIKG G      I+ A  +   F  L DFC RV  + +NRR LE+L+  GA D  
Sbjct: 825  RYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSI 884

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFSVENS 948
              +R  LL ++D           N   K  N  A++ G F       + + L    + + 
Sbjct: 885  EPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDAPMWSE 935

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQK 1007
            S +   E+ V+GFY SGHP   Y   +R++      + ++ ++  +++RLA  V + +  
Sbjct: 936  SEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKLSKLKPQDSVRLAGFVTAVRTM 991

Query: 1008 KTRKGSRIGWVTFSEPAKEYE 1028
              ++G +I +V+  + + + E
Sbjct: 992  MGKRG-KIAFVSLEDLSGQVE 1011


>gi|118497099|ref|YP_898149.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            novicida U112]
 gi|194323396|ref|ZP_03057173.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            novicida FTE]
 gi|208778892|ref|ZP_03246238.1| DNA polymerase III alpha subunit [Francisella novicida FTG]
 gi|118423005|gb|ABK89395.1| DNA polymerase III, alpha subunit [Francisella novicida U112]
 gi|194322251|gb|EDX19732.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            novicida FTE]
 gi|208744692|gb|EDZ90990.1| DNA polymerase III alpha subunit [Francisella novicida FTG]
          Length = 1159

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1022 (39%), Positives = 606/1022 (59%), Gaps = 41/1022 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRI 131
             +L +D            T F  +  +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVD------------TEF-GICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              SWL E+  E +I L GG  G + +A        A++ +    ++FG   Y+       
Sbjct: 111  PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIINQNIEIFGTNNYIIEIHKLE 170

Query: 192  YDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247
            Y+    Y E + ++ A  + L  VATN ++F+  +DY+ H++   +   +T++ +  + +
Sbjct: 171  YENEGLYNE-KALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP  ++      +KE 
Sbjct: 230  FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPT-VDIPAGLTEKEY 288

Query: 308  ENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             ++L      GL+ RL +      A    +  + Y+ RL  E+++I  M F GYFLIV D
Sbjct: 289  FSKL---CYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 346  FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  
Sbjct: 406  CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P      + + +     E   AD  V  ++E +QKLEGL R    HAAGIVI    +S  
Sbjct: 466  PGTTFK-KILHEGEPLYEEMQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK---VDL 598
             P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  + A+R      +D+
Sbjct: 525  APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI
Sbjct: 585  ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMG
Sbjct: 645  PTFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KK  EEM+KQ++ F  GA+K + I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTA
Sbjct: 705  KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIY 836
            W+K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I 
Sbjct: 765  WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTIL 824

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L AIKG+G    + I+ E      F S+ D C RVD +K+N++ LE+L +AGA+    
Sbjct: 825  LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR--F 952
             +R     S++   K A +V +      +++F   +        LE+   VE  +++   
Sbjct: 885  KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQKKTR 1010
             NE++ LG YFSGH +D        +     E+     + GN++R +A+M+    ++KT+
Sbjct: 945  INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004

Query: 1011 KG 1012
             G
Sbjct: 1005 TG 1006


>gi|261378286|ref|ZP_05982859.1| DNA polymerase III, alpha subunit [Neisseria cinerea ATCC 14685]
 gi|269145377|gb|EEZ71795.1| DNA polymerase III, alpha subunit [Neisseria cinerea ATCC 14685]
          Length = 1144

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/1046 (39%), Positives = 597/1046 (57%), Gaps = 64/1046 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  TP  +      M   FSDLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPSQFFIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q    +   A+   +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DYLVKLSNE-------GLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++  D+L KL
Sbjct: 407  DVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKL 466

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   P+ L  A+  + + +E   A+   D L+ +++KLE L R    HA G++I   
Sbjct: 467  IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K  
Sbjct: 526  KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYR
Sbjct: 581  TGDIVDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+DNI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD
Sbjct: 641  PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+
Sbjct: 700  LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F   
Sbjct: 760  ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYCFTPY 819

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             N +I Y+L AIKG G      I+ A  +   F  L DFC RV  + +NRR LE+L+  G
Sbjct: 820  PNMKIRYALGAIKGTGEAAVESIITARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943
            A D    +R  LL ++D           N   K  N  A++ G F       + + L   
Sbjct: 880  AFDSIEPNRAMLLANID-------LAMNNADQKAAN--ANQGGLFDMMEDAIEPVRLVDA 930

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVV 1002
             + + S +   E+ V+GFY SGHP   Y   +R++        +  ++  +++RLA  V 
Sbjct: 931  PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVT 986

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            + +    ++G +I +V+  + + + E
Sbjct: 987  AVRTMMGKRG-KIAFVSLEDLSGQIE 1011


>gi|308389929|gb|ADO32249.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis
            alpha710]
          Length = 1144

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/1041 (38%), Positives = 599/1041 (57%), Gaps = 54/1041 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC---D 301
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSRD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q    +   A+   +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DYLIKLSNE-------GLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L KL
Sbjct: 407  DVDFCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   P+SL  A+  + + +E   A+   D L+ +++KLE L R    HA G++I   
Sbjct: 467  IPLEANKPLSLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596
             +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + D +    G  +
Sbjct: 526  KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKNTTGDII 585

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+D
Sbjct: 586  DVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMD 645

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            NI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRA
Sbjct: 646  NIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRA 704

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQT
Sbjct: 705  MGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQT 764

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRI 835
            AW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +I
Sbjct: 765  AWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKI 824

Query: 836  YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y+L AIKG G      I+ A  +   F  L DFC RV  + +NRR LE+L+  GA D  
Sbjct: 825  RYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSI 884

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFSVENS 948
              +R  LL ++D           N   K  N  A++ G F       + + L    + + 
Sbjct: 885  EPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDAPMWSE 935

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQK 1007
            S +   E+ V+GFY SGHP   Y   +R++      + ++ ++  +++RLA  V + +  
Sbjct: 936  SEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKLSKLKPQDSVRLAGFVTAVRTM 991

Query: 1008 KTRKGSRIGWVTFSEPAKEYE 1028
              ++G +I +V+  + + + E
Sbjct: 992  MGKRG-KIAFVSLEDLSGQVE 1011


>gi|254372464|ref|ZP_04987953.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            novicida GA99-3549]
 gi|151570191|gb|EDN35845.1| DNA polymerase III alpha subunit [Francisella novicida GA99-3549]
          Length = 1159

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1022 (39%), Positives = 607/1022 (59%), Gaps = 41/1022 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRI 131
             +L +D            T F  +  +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVD------------TEF-GICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              SWL E+  E +I L GG  G + +A        A++ +    ++FG   Y+       
Sbjct: 111  PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIINQNIEIFGTNNYIIEIHKLE 170

Query: 192  YDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247
            Y+    Y E + ++ A  + L  VATN ++F+  +DY+ H++   +   +T++ +  + +
Sbjct: 171  YENEGLYNE-KALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP  ++      +KE 
Sbjct: 230  FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPT-VDIPAGLTEKEY 288

Query: 308  ENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             ++L      GL+ RL +      A    +  + Y+ RL  E+++I  M F GYFLIV D
Sbjct: 289  FSKL---CYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 346  FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  
Sbjct: 406  CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P      + + +     E   AD  V  ++E +QKLEGL R    HAAGIVI    +S  
Sbjct: 466  PGTTFK-KILHEGEPLYEEMQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGV---KVDL 598
             P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  + A+R     ++D+
Sbjct: 525  APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKRLDI 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI
Sbjct: 585  ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMG
Sbjct: 645  PTFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KK  EEM+KQ++ F  GA+K + I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTA
Sbjct: 705  KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIY 836
            W+K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I 
Sbjct: 765  WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTIL 824

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L AIKG+G    + I+ E      F S+ D C RVD +K+N++ LE+L +AGA+    
Sbjct: 825  LGLGAIKGLGGEAIKSILTERDIAGEFCSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR--F 952
             +R     S++   K A +V +      +++F   +        LE+   VE  +++   
Sbjct: 885  KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQKKTR 1010
             NE++ LG YFSGH +D        +     E+     + GN++R +A+M+    ++KT+
Sbjct: 945  INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004

Query: 1011 KG 1012
             G
Sbjct: 1005 TG 1006


>gi|329118563|ref|ZP_08247267.1| DNA-directed DNA polymerase III alpha subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465298|gb|EGF11579.1| DNA-directed DNA polymerase III alpha subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 1142

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1027 (39%), Positives = 582/1027 (56%), Gaps = 66/1027 (6%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +P ++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F+ ++F +    AGI
Sbjct: 3   APVYIPLRLHTEFSITDGMVRIKEVVKKAQEYGFPALGISDLMNEFALVKFYKACRGAGI 62

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           +P+    + I           G    P  P   +L++    GY RL EL++  Y+  +G+
Sbjct: 63  KPVGAADVWI-----------GNPAAPDKPFRAMLIIRNEAGYLRLSELLTAAYV-GEGR 110

Query: 127 --QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 +   WL      GLI L+G   G +       +   A    L +   F +  Y+
Sbjct: 111 NLHHAELNPEWLDSGDNSGLICLSGAHLGEMGVNLLNGNEDAARAAALKYAAWFPNAFYL 170

Query: 185 NLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            LQR      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ 
Sbjct: 171 ELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTD 230

Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE-- 299
           K RPR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   +  
Sbjct: 231 KKRPRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDGL 290

Query: 300 -CDDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
             DD   +  NE       GL+ R+ Q       +     +Y++RLDFELN+I +MKF G
Sbjct: 291 SLDDYLVKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPG 343

Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
           YFLIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 344 YFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSM 403

Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
           PDFD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++  D+L
Sbjct: 404 PDFDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKL 463

Query: 476 CKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            KLIP +   P+ L  A+  + + +E   A+   D L+ +++KLE L R    HA G++I
Sbjct: 464 SKLIPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLI 522

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRG 593
               +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + D + A  G
Sbjct: 523 APGKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKATTG 582

Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPG
Sbjct: 583 DIVDVGTIPLDDQAAYKIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPG 642

Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
           P+DNI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+L
Sbjct: 643 PMDNIPDFVARMKGQE-FQYIHPLLEDILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLL 701

Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
           RRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+IS
Sbjct: 702 RRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALIS 761

Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGD 832
           YQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I  +PP +N     F   G+
Sbjct: 762 YQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGITFLPPDINESSYRFVPDGN 821

Query: 833 NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +I Y+L AIKG G      I+ A  A   F  L DFC RV    +NRR LE+L+  GA 
Sbjct: 822 KQIRYALGAIKGTGEAAVESIIAAREAGGKFTGLLDFCERVGKDHMNRRTLEALIRGGAF 881

Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFSV 945
           D    +R  L+ ++D          +N   K  N  A++ G F       + + L     
Sbjct: 882 DSIEPNRAMLMANID-------LAMENADQKAAN--ANQGGLFDMMDDAIEPVKLSAAPA 932

Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG--------------IKGYEESVATIR 991
            + S +   E+ V+GFY SGHP   Y+  +R+                + G+   V T+ 
Sbjct: 933 WSESEKLAEEKTVIGFYLSGHPFAPYEQEIRRFAPVSLGRLKTQDSVRVAGFATGVRTMN 992

Query: 992 GNNIRLA 998
           G + R A
Sbjct: 993 GKSGRFA 999


>gi|254373926|ref|ZP_04989408.1| DNA-directed DNA polymerase [Francisella novicida GA99-3548]
 gi|151571646|gb|EDN37300.1| DNA-directed DNA polymerase [Francisella novicida GA99-3548]
          Length = 1159

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1022 (39%), Positives = 605/1022 (59%), Gaps = 41/1022 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRI 131
             +L +D            T F  +  +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVD------------TEF-GICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              SWL E+  E +I L GG  G + +A        A++ +    ++FG   Y+       
Sbjct: 111  PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIINQNIEIFGTNNYIIEIHKLE 170

Query: 192  YDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247
            Y+    Y E + ++ A  + L  VATN ++F+  +DY+ H++   +   +T++ +  + +
Sbjct: 171  YENEGLYNE-KALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP  +       +KE 
Sbjct: 230  FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPT-VNIPAGLTEKEY 288

Query: 308  ENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             ++L      GL+ RL +      A    +  + Y+ RL  E+++I  M F GYFLIV D
Sbjct: 289  FSKL---CYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 346  FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  
Sbjct: 406  CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P      + + +     E   AD  V  ++E +QKLEGL R    HAAGIVI    +S  
Sbjct: 466  PGTTFK-KILHEGEPLYEEMQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK---VDL 598
             P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  + A+R      +D+
Sbjct: 525  APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI
Sbjct: 585  ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMG
Sbjct: 645  PTFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KK  EEM+KQ++ F  GA+K + I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTA
Sbjct: 705  KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIY 836
            W+K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I 
Sbjct: 765  WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTIL 824

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L AIKG+G    + I+ E      F S+ D C RVD +K+N++ LE+L +AGA+    
Sbjct: 825  LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR--F 952
             +R     S++   K A +V +      +++F   +        LE+   VE  +++   
Sbjct: 885  KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQKKTR 1010
             NE++ LG YFSGH +D        +     E+     + GN++R +A+M+    ++KT+
Sbjct: 945  INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004

Query: 1011 KG 1012
             G
Sbjct: 1005 TG 1006


>gi|310641197|ref|YP_003945955.1| DNA polymerase iii, alpha subunit [Paenibacillus polymyxa SC2]
 gi|309246147|gb|ADO55714.1| DNA polymerase III, alpha subunit [Paenibacillus polymyxa SC2]
          Length = 1221

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/1039 (39%), Positives = 614/1039 (59%), Gaps = 36/1039 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL+GA     ++ + +A    A+A+TD   ++ A+ F +     GI+P
Sbjct: 3    SFVHLHVHSEYSLLDGAARTAELVKQASAYGMKALALTDHGVMYGAIPFYRACVENGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  +      +  ++   P   +  ++LL     GYQ L++L S  +L +      
Sbjct: 63   IIGCEAYMTAGSRKERGSRKDQP---IYHLILLAKNKTGYQNLMKLCSIGHL-EGFHYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI +  L     EG+I L+    G + +         A +    ++ +FGD  Y+ LQ H
Sbjct: 119  RIDMDALAA-HHEGIICLSACLGGEVPQHLLHGREAEARRAAERYRSIFGDDFYLELQDH 177

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ R   Q++ LA   ++PLVATN+  +L+E D +  DVL+ +     V  ++R R+
Sbjct: 178  GLSEQKRVNPQLIALAKELDIPLVATNDVHYLTEPDADVQDVLICIGTGKTVDDEERLRI 237

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   YLK++ EM  +F  + EA+ NTV IA +C   L+    ILP +     D      
Sbjct: 238  PTRQLYLKSQEEMARLFPHVAEAIANTVRIAEKCELELEFGQSILPEYRPLPED---MTS 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + LR+  V GLE R     + +    ++   QRL++ELN I  M FS YFLIV DFI +
Sbjct: 295  SSYLRSLCVQGLERRYGGDPVWEQPEERERLDQRLNYELNTIDSMGFSDYFLIVWDFIAF 354

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K+ I  GPGRGS AGS+ AY L IT++DP++++LLFERFLNP+R+SMPD DIDF  +R
Sbjct: 355  AHKHKITTGPGRGSSAGSLVAYVLNITNVDPMKYNLLFERFLNPERISMPDIDIDFSDER 414

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV  KYG+E VAQIITFG+L A+AA+RDVGR L +PY +VD+  KLIP      
Sbjct: 415  RDEVIDYVVQKYGNEHVAQIITFGTLAARAAVRDVGRVLNVPYGEVDKAAKLIPAQLGIN 474

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A+      +      P    LL+++ K+EG+ RHASTHAAG+VI   PL+  VP+ 
Sbjct: 475  IR-HALEITPELKALYETKPKTRELLDMAIKVEGMPRHASTHAAGVVISRTPLTDAVPL- 532

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
            ++    +P+TQ++M+ +E+ GL+K DFLGL+TL+++++ + ++A Q G   D S +P DD
Sbjct: 533  QEGSEGVPLTQYSMENLERIGLLKMDFLGLRTLSIIERCMRWIAEQHGETPDFSRVPDDD 592

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              TY LL    T G+FQLES+G+R+ L+ ++P   EDII++V+LYRPGP+  I  +   K
Sbjct: 593  PHTYDLLGKGDTGGVFQLESAGVRRVLKDLKPSVFEDIISVVALYRPGPMGFIPNFIQAK 652

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+ +I   HP ++P+LK+T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E +
Sbjct: 653  HGQIEISYPHPDLEPILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREVL 712

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D ++  F+ G+ K G ++  A  +++++ +FADYGF ++HAAAY V+++QTA++K HYPV
Sbjct: 713  DLERGHFVEGSIKQGYTEEEAGRVYDMIVRFADYGFPRAHAAAYGVLAFQTAYLKAHYPV 772

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF---KVGDNRIYYSLAAI 842
            +F+A+ +T  M +  K+ ++  + R+ +I ++PP VN   V F   + GD  I + LAAI
Sbjct: 773  QFMASMLTAVMGSHRKVAEYVVECRRMDIAVLPPDVNESGVLFTPLQHGD--IRFGLAAI 830

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            K VGT     I+    ++PFDSL DFC RVD +  N+RV+ESL+ AGA D     R QLL
Sbjct: 831  KNVGTQAMESILAVRKERPFDSLLDFCRRVDLRVCNKRVIESLIQAGAFDSLTGHRAQLL 890

Query: 903  QSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-RFENEQR--- 957
              LD  +   A+W  K R +   ++F          + +  + +E  +V  F   Q+   
Sbjct: 891  AMLDETVDAAAKW-RKERDDLQIDMFGF--------VEMPNWDIEYPNVPPFSTSQQLEL 941

Query: 958  ---VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
               +LG Y SGHPLD ++ +L         E         I  A MVVS +   T++G  
Sbjct: 942  ERELLGLYLSGHPLDDFESLLESSQADRLMELSDVPDETVIVTAGMVVSLKTITTKQGKA 1001

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + ++   +  +  E   FP
Sbjct: 1002 MAFIELEDQIERCEVVLFP 1020


>gi|313669043|ref|YP_004049327.1| DNA polymerase III, alpha subunit [Neisseria lactamica ST-640]
 gi|313006505|emb|CBN87969.1| putative DNA polymerase III, alpha subunit [Neisseria lactamica
            020-06]
          Length = 1144

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/1045 (38%), Positives = 595/1045 (56%), Gaps = 62/1045 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            P+    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PVGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  TP  +      MV  F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPGQFFIPPETMVERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q       +     +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DYLIKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++  D+L KL
Sbjct: 407  DVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKL 466

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   P+SL  A+  + + +E   A+   D L+ +++KLE L R    HA G++I   
Sbjct: 467  IPLEANKPLSLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K  
Sbjct: 526  KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYR
Sbjct: 581  TGDIVDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+DNI  +  R  G +K   IHPL++ +L  T G+++YQEQVMQ+AQ++ GYSL  AD
Sbjct: 641  PGPMDNIPDFVARMKG-QKFQYIHPLLEGILDPTYGIMVYQEQVMQVAQIIGGYSLGGAD 699

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+
Sbjct: 700  LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-V 830
            ISYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F   
Sbjct: 760  ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D +I Y+L AIKG G      I  A  +   F  L DFC RV  + +NRR LE+L+  G
Sbjct: 820  PDMKIRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943
            A D    +R  LL ++D           N   K  N  A++ G F       + + L   
Sbjct: 880  AFDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLVDA 930

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
             + + S +   E+ V+GFY SGHP   Y   + ++     +        +++RLA  V +
Sbjct: 931  PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVCQIAPTKLDRLKPQ---DSVRLAGFVTA 987

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYE 1028
             +    ++G +I +V+  + + + E
Sbjct: 988  VRTMMGKRG-KIAFVSLEDLSGQVE 1011


>gi|134302515|ref|YP_001122485.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis WY96-3418]
 gi|134050292|gb|ABO47363.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis WY96-3418]
          Length = 1159

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1022 (39%), Positives = 605/1022 (59%), Gaps = 41/1022 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRI 131
             +L +D            T F  +  +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVD------------TEF-GICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              SWL E+  E +I L GG  G + +A        A++ +    ++FG   Y+       
Sbjct: 111  PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170

Query: 192  YDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247
            Y+    Y E + ++ A  + L  VATN ++F+  +DY+ H++   +   +T++ +  + +
Sbjct: 171  YENEGLYNE-KALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP  +       +KE 
Sbjct: 230  FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPT-VNIPAGLTEKEY 288

Query: 308  ENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             ++L      GL+ RL +      A    +  + Y+ RL  E+++I  M F GYFLIV D
Sbjct: 289  FSKL---CYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 346  FIRWSKENDIPVGPGRGSGAGSMVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  
Sbjct: 406  CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P      + + +     E   AD  V  ++E +QKLEGL R    HAAGIVI    +S  
Sbjct: 466  PGTTFK-KILHEGEPLYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK---VDL 598
             P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  + A+R      +D+
Sbjct: 525  APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI
Sbjct: 585  ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMG
Sbjct: 645  PTFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KK  EEM+KQ++ F  GA+K + I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTA
Sbjct: 705  KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIY 836
            W+K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I 
Sbjct: 765  WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTIL 824

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L AIKG+G    + I+ E      F S+ D C RVD +K+N++ LE+L +AGA+    
Sbjct: 825  LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR--F 952
             +R     S++   K A +V +      +++F   +        LE+   VE  +++   
Sbjct: 885  KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQKKTR 1010
             NE++ LG YFSGH +D        +     E+     + GN++R +A+M+    ++KT+
Sbjct: 945  INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004

Query: 1011 KG 1012
             G
Sbjct: 1005 TG 1006


>gi|253581934|ref|ZP_04859158.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
           ATCC 27725]
 gi|251836283|gb|EES64820.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
           ATCC 27725]
          Length = 1138

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/980 (40%), Positives = 602/980 (61%), Gaps = 41/980 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +FVHL +H+ YSLL+G   +++ LD+  A    AIAITD  NLF  LEF +KA   GI+P
Sbjct: 4   NFVHLHLHTEYSLLDGVGKIDDYLDRTKALNMQAIAITDHGNLFGVLEFYKKAIKKGIKP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128
           IIG  L+  + +   +  +G+     +  +VLL    +GYQ L+++ S  Y+  +G    
Sbjct: 64  IIG--LEAYVSEFSMLEKEGR-----IFHLVLLAENNKGYQNLLKISSESYI--KGFYYK 114

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-FKKLFG-DRLYVNL 186
            RI   +L+ + +EG+I L+    G I R    N S+     ++  +  +FG D  Y+ +
Sbjct: 115 PRIDKEFLK-MHSEGIIALSACMQGEIPRRILDNESEEKVDEIVNEYVDIFGKDNFYIEV 173

Query: 187 QRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           Q +  +G     E ++  LA  H+L +VATN++ +++E ++   D+L+ V     V+ + 
Sbjct: 174 QANGVKGQTALNE-KLYNLAQKHQLKMVATNDTHYVNEGEHTLQDILICVQTGAKVADEK 232

Query: 245 RPRVTPDH-YLKNRSEMV-SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           R R+  D  +LK+R +++  + +   EA+ NT+EIA RC+  ++      P +   E   
Sbjct: 233 RMRIETDELFLKSREQIIDGLGAKYLEAVNNTIEIAERCNVNIEFGKFKFPEY---EIPS 289

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             K  E  LR     GL  R   G            +R+++EL+VI +M ++ YF++V D
Sbjct: 290 CVKTIEEFLRKLVYFGLSKRYPHGLTI------SVLERVEYELSVIEKMGYAAYFVVVWD 343

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           FI +AK+N IP+GPGRGS AGS+ AYAL IT++DPL ++L+FERFLNP+R+SMPD DID 
Sbjct: 344 FIDYAKRNRIPIGPGRGSAAGSLVAYALRITELDPLDYNLIFERFLNPERISMPDIDIDI 403

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           CQ+RR EVI YV  KYG ++VAQIITFG+++A+AA+RDVGR +  P S+VD + KL+P +
Sbjct: 404 CQERRQEVIEYVIRKYGEDKVAQIITFGTMKARAAIRDVGRVMDTPLSKVDSIAKLVPFN 463

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +L  + +   F+   L DP + ++++IS +LE   RHAS HAAGIVI   PL+  
Sbjct: 464 ATIQQTLNNVEE---FKNMYLNDPEIQKVIDISARLENKVRHASIHAAGIVITKDPLTDT 520

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
           VP+Y D ++ +  TQ+ MK +E  GL+K DFLGL+ LT LQ+++D++ +  G  ++LS I
Sbjct: 521 VPLYSDNKNKVVSTQYQMKELEDLGLLKMDFLGLRNLTNLQRTIDYIKEDLGEDIELSEI 580

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
           P +  + Y +L+   T G+FQ+ES G+R+ L  ++PD  EDIIAL++LYRPGP+ + +V 
Sbjct: 581 PLNSKKVYEMLSRGDTSGVFQMESQGIRKILLKLKPDRFEDIIALLALYRPGPLGSGMVD 640

Query: 661 -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            + N KNG  +I   HP ++  LKET GVI+YQEQVM+IA +++ YSL EAD+LRRAMGK
Sbjct: 641 DFINGKNGTSEIKYPHPSLELTLKETYGVILYQEQVMKIANIMANYSLGEADLLRRAMGK 700

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K  + M++ +E+F+  +  NG +K  A+ +FEL+ KFA YGFNKSH+AAYA+I+Y TA+ 
Sbjct: 701 KNIQIMEENREKFVERSMANGYTKEKAIEMFELIDKFAGYGFNKSHSAAYALIAYWTAYF 760

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
           K +Y   + A+ MT EM +VE I  + +DA+  N+++  P VN     F V    I +SL
Sbjct: 761 KAYYMKHYYASLMTSEMSHVEDIAFYMEDAKVHNLKLHLPDVNRASPKFIVDKEGIIFSL 820

Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
           AAIK VG   +  I+ E + +  + + EDF  R     LN++ LESL+ AGALD    +R
Sbjct: 821 AAIKNVGEGVSGKILEECNENGKYKNFEDFVVRTRKHGLNKKALESLILAGALDGLPGNR 880

Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFENE 955
            Q  +S+D I  YA    K    +  N+F   K   G F+    + ++S+E    R   E
Sbjct: 881 RQKFESVDKILDYATRKIKEDEIQQMNLFGEAKSSLGVFTLP-QIPEYSLEELLAR---E 936

Query: 956 QRVLGFYFSGHPLDVYKPIL 975
           +  LGFYFS HPLD Y+ ++
Sbjct: 937 KEYLGFYFSAHPLDNYRRLI 956


>gi|319409850|emb|CBY90162.1| DNA polymerase III alpha subunit [Neisseria meningitidis WUE 2594]
          Length = 1144

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/1046 (38%), Positives = 598/1046 (57%), Gaps = 64/1046 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKTCRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q    +   A+   +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DYLIKLSNE-------GLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KL
Sbjct: 407  DVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   P+ L  A+  + + +E   A+   D L+ +++KLE L R    HA G++I   
Sbjct: 467  IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K  
Sbjct: 526  KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYR
Sbjct: 581  TGDIVDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+DNI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD
Sbjct: 641  PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+
Sbjct: 700  LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F   
Sbjct: 760  ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             N +I Y+L AIKG G      I+ A  +   F  L DFC RV  + +NRR LE+L+  G
Sbjct: 820  PNMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943
            A D    +R  LL ++D           N   K  N  A++ G F       + + L   
Sbjct: 880  AFDSIEPNRAMLLANID-------LAMNNADQKAAN--ANQGGLFDMMEDAIEPVRLIDA 930

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVV 1002
             + + S +   E+ V+GFY SGHP   Y   +R++      + ++ ++  +++RLA  V 
Sbjct: 931  PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKLSKLKPQDSVRLAGFVT 986

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            + +    ++G +I +V+  + + + E
Sbjct: 987  AVRTMMGKRG-KIAFVSLEDLSGQVE 1011


>gi|304388354|ref|ZP_07370467.1| DNA-directed DNA polymerase III alpha subunit [Neisseria meningitidis
            ATCC 13091]
 gi|304337671|gb|EFM03827.1| DNA-directed DNA polymerase III alpha subunit [Neisseria meningitidis
            ATCC 13091]
          Length = 1144

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/1035 (38%), Positives = 596/1035 (57%), Gaps = 42/1035 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   D          PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGNPD------APDKPF----RAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYMELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TPD +      M+  F+DLPEALENTVEIA+RC+  + +    LP F     D + 
Sbjct: 234  PRDFTPDQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLF--PTPDGLS 291

Query: 305  KEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +++   +L N+ +    V+L      +     +Y++RLDFELN+I +MKF GYFLIV DF
Sbjct: 292  RDDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDF 351

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+DFC
Sbjct: 352  INWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFC 411

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP + 
Sbjct: 412  QANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEA 471

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              P+SL  A+  + + +E   A+   D L+ +++KLE L R    HA G++I    +S  
Sbjct: 472  NKPLSLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDY 530

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------V 596
             P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K      +
Sbjct: 531  SPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNTTGDII 585

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+D
Sbjct: 586  DVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMD 645

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            NI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRA
Sbjct: 646  NIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRA 704

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQT
Sbjct: 705  MGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQT 764

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRI 835
            AW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +I
Sbjct: 765  AWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKI 824

Query: 836  YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y+L AIKG G      I  A  +   F  L DFC RV  + +NRR LE+L+  GA D  
Sbjct: 825  RYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSI 884

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R  LL ++D     A   +K        +F   +    + + L    + + S +   
Sbjct: 885  EPNRAMLLANIDLAMNNAD--QKAANTNQGGLFDMMEDAI-EPVRLIDAPMWSESEKLAE 941

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGS 1013
            E+ V+GFY SGHP   Y   +R++        +  ++  +++RLA  V + +    ++G 
Sbjct: 942  EKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVTAVRTMMGKRG- 996

Query: 1014 RIGWVTFSEPAKEYE 1028
            +I +V+  + + + E
Sbjct: 997  KIAFVSLEDLSGQVE 1011


>gi|325129568|gb|EGC52392.1| DNA polymerase III, alpha subunit [Neisseria meningitidis OX99.30304]
          Length = 1144

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/1041 (38%), Positives = 596/1041 (57%), Gaps = 54/1041 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            P   TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PHDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q       +     +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DYLIKLSNE-------GLQERMVQLYPDEAERAAKMPEYQKRLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KL
Sbjct: 407  DVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466

Query: 479  IPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   P+SL+ A+  + + +E   A+   D L+ +++KLE L R    HA G++I   
Sbjct: 467  IPLEANKPLSLEKAMETEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596
             +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + D +    G  +
Sbjct: 526  KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKNTTGDII 585

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+D
Sbjct: 586  DVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMD 645

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            NI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRA
Sbjct: 646  NIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRA 704

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQT
Sbjct: 705  MGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQT 764

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRI 835
            AW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +I
Sbjct: 765  AWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKI 824

Query: 836  YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y+L AIKG G      I+ A  +   F  L DFC RV  + +NRR LE+L+  GA D  
Sbjct: 825  RYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSI 884

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFSVENS 948
              +R  LL ++D           N   K  N  A++ G F       + + L    + + 
Sbjct: 885  EPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDAPMWSE 935

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQK 1007
            S +   E+ V+GFY SGHP   Y   +R++      + ++ ++  +++RLA  V + +  
Sbjct: 936  SEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKLSKLKPQDSVRLAGFVTAVRTM 991

Query: 1008 KTRKGSRIGWVTFSEPAKEYE 1028
              ++G +I +V+  + + + E
Sbjct: 992  MGKRG-KIAFVSLEDLSGQVE 1011


>gi|325201527|gb|ADY96981.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M01-240149]
 gi|325207506|gb|ADZ02958.1| DNA polymerase III, alpha subunit [Neisseria meningitidis NZ-05/33]
          Length = 1144

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1041 (38%), Positives = 599/1041 (57%), Gaps = 54/1041 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F     D + 
Sbjct: 234  PRDFTPGQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLF--PTPDGLS 291

Query: 305  KEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +++   +L NK +    V+L      +     +Y++RLDFELN+I +MKF GYFLIV DF
Sbjct: 292  RDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDF 351

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+DFC
Sbjct: 352  INWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFC 411

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP + 
Sbjct: 412  QANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEA 471

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              P+ L  A+  + + +E   A+   D L+ +++KLE L R    HA G++I    +S  
Sbjct: 472  NKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDY 530

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------V 596
             P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K      +
Sbjct: 531  SPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNTTGDII 585

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+D
Sbjct: 586  DVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMD 645

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            NI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRA
Sbjct: 646  NIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRA 704

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQT
Sbjct: 705  MGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQT 764

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRI 835
            AW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +I
Sbjct: 765  AWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKI 824

Query: 836  YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y+L AIKG G      I+ A  +   F  L DFC RV  + +NRR LE+L+  GA D  
Sbjct: 825  RYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSI 884

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFSVENS 948
              +R  LL ++D           N   K  N  A++ G F       + + L    + + 
Sbjct: 885  EPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDAPMWSE 935

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQK 1007
            S +   E+ V+GFY SGHP   Y   +R++      + ++ ++  +++RLA  V + +  
Sbjct: 936  SEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKLSKLKPQDSVRLAGFVTAVRTM 991

Query: 1008 KTRKGSRIGWVTFSEPAKEYE 1028
              ++G +I +V+  + + + E
Sbjct: 992  MGKRG-KIAFVSLEDLSGQVE 1011


>gi|309378417|emb|CBX22970.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 1144

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/1045 (38%), Positives = 594/1045 (56%), Gaps = 62/1045 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            P+    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PVGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTEAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q       +     +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DYLIKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++  D+L KL
Sbjct: 407  DVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKL 466

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   P+SL  A+  + + +E   A+   D L+ +++KLE L R    HA G++I   
Sbjct: 467  IPLEANKPLSLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K  
Sbjct: 526  KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYR
Sbjct: 581  TGDIVDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+DNI  +  R  G +K   IHPL++ +L  T G+++YQEQVMQ+AQ++ GYSL  AD
Sbjct: 641  PGPMDNIPDFVARMKG-QKFQYIHPLLEGILDPTYGIMVYQEQVMQVAQIIGGYSLGGAD 699

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+
Sbjct: 700  LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-V 830
            ISYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F   
Sbjct: 760  ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D +I Y+L AIKG G      I  A  +   F  L DFC RV  + +NRR LE+L+  G
Sbjct: 820  PDMKIRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943
            A D    +R  LL ++D           N   K  N  A++ G F       + + L   
Sbjct: 880  AFDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLVDA 930

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
             + + S +   E+ V+GFY SGHP   Y   + ++     +        +++RLA  V +
Sbjct: 931  PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVCQIAPTKLDRLKPQ---DSVRLAGFVTA 987

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYE 1028
             +    ++G +I +V+  + + + E
Sbjct: 988  VRTMMGKRG-KIAFVSLEDLSGQVE 1011


>gi|315924608|ref|ZP_07920827.1| DNA-directed DNA polymerase III alpha subunit [Pseudoramibacter
            alactolyticus ATCC 23263]
 gi|315622138|gb|EFV02100.1| DNA-directed DNA polymerase III alpha subunit [Pseudoramibacter
            alactolyticus ATCC 23263]
          Length = 1178

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1067 (39%), Positives = 603/1067 (56%), Gaps = 72/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VHS YSLL+G   +++ +         A+A+TD   LF  +EF +   A GI P
Sbjct: 4    SFTHLHVHSEYSLLDGFGRISDYVQTAKEMGMNALALTDHGVLFGGIEFYKACVARGINP 63

Query: 70   IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIGC++ +  +  L K   +   P+     ++LL    EGY+ L ++VS+ ++ D     
Sbjct: 64   IIGCEVYVAPRTLLDKEAGKDSRPY----HLILLAENNEGYRNLSKIVSKGFI-DGFYYK 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             RI    L+    EG+I L+   +G I RA        AE    T+  +FG D  ++ +Q
Sbjct: 119  PRIDHDTLRRY-REGIICLSACIAGEIPRAVLEEQPARAEALCETYIDIFGKDHFFLEIQ 177

Query: 188  RHRGYDRYRESQV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             HR     +E++V      LA  + + L ATN+  ++ ++DYEAHDVL+ +   + V + 
Sbjct: 178  DHR---LSKEAKVREFLFHLADKYGIGLAATNDCHYVRQDDYEAHDVLLCIGTGSTVDET 234

Query: 244  DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            DR R   D  YLK+  EM ++F D PEAL NT +IA RC     + +  LP+F   E  +
Sbjct: 235  DRMRYANDQFYLKSPEEMAAMFPDHPEALANTQKIADRCHVTFDLESAHLPKF---ELPE 291

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIV 360
               E  + +R+   AGL         AK Y     + R+R+D+EL  I  M F  YFL+V
Sbjct: 292  GYTEAGDYVRHLCEAGL---------AKRYDTITPEIRERMDYELKTIHTMGFDDYFLVV 342

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI +AK +NIPVGPGRGS AGS+ AYAL IT +DPL+++LLFERFLNP+R++MPD D 
Sbjct: 343  WDFIHYAKTHNIPVGPGRGSAAGSLAAYALDITTLDPLQYNLLFERFLNPERVTMPDIDC 402

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC +RR EVI YV  KYG +RVAQIITFG++ A+ A+RDVGR L +PY+QVD++ K IP
Sbjct: 403  DFCYERRQEVIDYVIRKYGKDRVAQIITFGTMAARGAVRDVGRVLGIPYAQVDKVAKEIP 462

Query: 481  NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              P   VS+ +AI ++   ++   +D  V RLL +S+K+EGL RHASTHAAG+VI D PL
Sbjct: 463  MRPGQSVSIHEAIEENPDLKQMADSDAEVRRLLAMSEKMEGLARHASTHAAGVVISDAPL 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDL 598
            ++ VP+YR+   D   TQ+ M  +E  GLIK DFLGL+TLT++  ++ +    RG+ VD+
Sbjct: 523  TEYVPLYRN--GDAITTQYTMNLLEDLGLIKMDFLGLRTLTVIADAVANIQESRGIAVDI 580

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I   D   Y ++ +   LG+FQLES GM   +  +QP   EDIIA +SLYRPGP+D I
Sbjct: 581  DHIDMHDAGVYEMIASGDCLGVFQLESRGMIAFMRELQPQTFEDIIAGISLYRPGPMDQI 640

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y   K   E I   H  + P+L  T G ++YQEQVMQI + L+G+S+  +D++RRAM 
Sbjct: 641  PRYIANKKDPEHIAYTHEALRPILNVTYGCMVYQEQVMQIFRDLAGFSMGRSDLVRRAMS 700

Query: 719  KKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            KK  E MD + E FI             GA   GI +  A  I+E +  FA Y FNKSHA
Sbjct: 701  KKKSEVMDAEGEVFIHGERDTDGQVVVPGAVAKGIPEAAARRIYEEMKDFAKYAFNKSHA 760

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYAVI+YQTAW+K HYP EF+AA M+  MDN +KI ++  + ++  I+++ P VN    
Sbjct: 761  AAYAVIAYQTAWLKRHYPAEFMAALMSSVMDNEKKISQYIDNCKRRGIRVLLPDVNISRR 820

Query: 827  DFKV-----GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRR 880
             F V     G   +   L AIKG+G      I+ A   +  F    DFC +VDS  +N++
Sbjct: 821  KFSVEINADGRENVRMGLGAIKGLGDKPIAAIVNARQTEGAFTGFRDFCEKVDSHAVNKK 880

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTF 934
               +L+ AGA D  G  R +++   D I +     +++R +   ++       A++  TF
Sbjct: 881  AAANLILAGAFDFLGIDRARMVLGSDLIVQQVAEEKQDRLSGQMSLLDMGELNAYKGDTF 940

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG------IKGYEESVA 988
             +     K      + +   E+ VLG Y SGHPL+ Y  IL          +  YE+ +A
Sbjct: 941  PEAPPFSK------AEKLAREKEVLGLYVSGHPLEHYVGILSSETNLNSGMMDSYEDLLA 994

Query: 989  T--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +    G  + +  +V   + + T+  +++ ++T  +     E   FP
Sbjct: 995  SGIPDGGRVTVGGLVDQLKVQLTKTNAQMAFLTLEDLYGRMEVVVFP 1041


>gi|303256875|ref|ZP_07342889.1| DNA polymerase III, alpha subunit [Burkholderiales bacterium 1_1_47]
 gi|302860366|gb|EFL83443.1| DNA polymerase III, alpha subunit [Burkholderiales bacterium 1_1_47]
          Length = 1148

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/1023 (38%), Positives = 603/1023 (58%), Gaps = 50/1023 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+ +G L+   ++ K  A    A+AITD   +F  + F + A AAGI+PI
Sbjct: 5    FVHLRMHTEFSIKDGMLNPKKVVHKAIASGMKALAITDATAMFGDVIFYKAASAAGIKPI 64

Query: 71   IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +G    I    +  D L++              + L    +GY  L +L+SR +L +Q K
Sbjct: 65   LGGDCSITNHYNRDDYLRL--------------LFLARNHQGYLTLCDLLSRAWLTNQYK 110

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                + L W+     +GLI+L+G ++G I +A    S   AE+      + F    ++ L
Sbjct: 111  DRGEVDLDWITPEMADGLIVLSGFNTGAIGKAILNGSLSAAEQEARRLSQKF-PHFFMEL 169

Query: 187  QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR  R  D    ++ V+LA    LP+VAT    F + ED+E H+  +A+A    ++ K R
Sbjct: 170  QRVGRPNDEMLVAESVKLAKKLGLPVVATQPIQFENSEDFEFHEARVAIADGFTLANKAR 229

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR+ TP  Y + + EM  +F D+P A+EN+VEIA+RC+  +++  P LP F   +   ++
Sbjct: 230  PRIYTPQQYFRTKEEMCELFKDIPSAIENSVEIAKRCNVTIKLGKPQLPIFPTPDGMSLK 289

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                + +   A  GL+ RL         +      Y++RL+ E+ +I  M F GYFLIV 
Sbjct: 290  ----DYMAQLAREGLDRRLKVLYPDEKKREAEFPRYKERLEREIKIIQDMDFPGYFLIVQ 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  DFINWAKTHGCPVGPGRGSGAGSLVAYSLGITDLDPLAYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ+ R  VI YV++KYG E V+QI TFG++ AK  ++DVGR L M YS+ DRL ++IP 
Sbjct: 406  FCQNNRGRVIEYVKSKYGEESVSQIATFGTMGAKGVIKDVGRVLDMSYSEADRLSRMIPT 465

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P H  +L+ A++++ +FR     +P   +L+E + KLEG  R    HA G++I    L 
Sbjct: 466  RPGHNTTLEEALSEEPQFRAEVRNNPQARKLIEYALKLEGTTRSLGIHAGGVLIAPGKLI 525

Query: 541  QLVPMYRDVRSDLP---VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKV 596
               P+Y      LP   ++ ++ K +E  GL+KFDFLGL TLT+++++LD++ +  GV+ 
Sbjct: 526  DFCPLY--AAGMLPENVISMYDKKDVEAVGLVKFDFLGLTTLTIIERALDYIEKNTGVRP 583

Query: 597  DLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            D+  +  DD +TY  +  T  T+ +FQ ES GM + L   +P  + D+IAL +LYRPGP+
Sbjct: 584  DIEHMECDDEDTYKKIFQTGDTVAVFQFESPGMHKLLIDAKPTQLSDLIALNALYRPGPM 643

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  + + + G++K     P + P+L++T G+++YQEQVM +AQ + GYSL  AD+LRR
Sbjct: 644  DLIPDFLDIRAGRKKAEYADPRLIPILEDTAGIMVYQEQVMLVAQKIGGYSLGGADILRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM++Q + FI GA+KNG+S+ +A ++FEL+ KFA YGFNKSHAAAY+ ++Y+
Sbjct: 704  AMGKKDVAEMERQSKVFIEGAAKNGVSEEVAAHLFELMRKFAGYGFNKSHAAAYSYVAYK 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834
            T W+K +YP EFLA+S++  M + EK  K   DA++ +++++ P +N    ++       
Sbjct: 764  TGWLKNYYPAEFLASSLSEVMTDPEKSLKILMDAKRHSVKLLGPDINESEFNYTSPKTME 823

Query: 835  IYYSLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I   L A+KGVG+  A  I  E   + PF    D   RV S+ + +++++    AG  D 
Sbjct: 824  IRMGLGALKGVGSAPAEAIKAEREQNGPFKDPFDLVKRVGSQLITKKIIQVFAMAGVFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R +  ++ D + + AQ  E  +     ++F  E    S+++ +++ +  +   R E
Sbjct: 884  IEPNRRKWFENADVVVQSAQ--ENEKAADQFSLFGEEP---SNEVPIKEVAPWSDRTRME 938

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN---IRLAAMVVSKQQKKTR 1010
             EQ VLGFYFSGHPL+ Y+  L+    + +   VA     N     +A M +  +Q++ +
Sbjct: 939  KEQYVLGFYFSGHPLEAYQSELK----RNFGALVAGTESENPGEYLVAGMYLGCEQRRGK 994

Query: 1011 KGS 1013
             GS
Sbjct: 995  DGS 997


>gi|328675636|gb|AEB28311.1| DNA polymerase III alpha subunit [Francisella cf. novicida 3523]
          Length = 1159

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/1020 (39%), Positives = 614/1020 (60%), Gaps = 37/1020 (3%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ +S+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGFSVVDSTVRLTDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRI 131
             +L +D            T F  V  +VLL    +GYQ ++ LVS+ Y   D+      I
Sbjct: 64   VELKVD------------TEF-GVCDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
              +WL++I    +I L GG  G + +A      + A++ +    ++FG   Y+ ++ H+ 
Sbjct: 111  PKNWLKDINLANVICLNGGQQGELGKAILAKDYRKADEIINQNVEIFGANNYI-IEIHKL 169

Query: 191  GYDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRP 246
             Y+    Y E + ++ A  + L  VATN ++F+  +DY+ H++   +   +T++ +  + 
Sbjct: 170  EYENEGLYNE-KALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKS 228

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + T + YLK+  EM   FS LP  ++NT+ IA+RC+ + ++  P LP  ++      +KE
Sbjct: 229  KFTKEQYLKSAEEMYETFSALPVLVDNTLAIAKRCNVMFELGKPCLPT-VDIPAGLTEKE 287

Query: 307  EENELRNKAVAG-LEVRLAQGAIAKGYHA-QDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              ++L  + +   LE  LA  +  K  H  + Y+ RL  E+++I  M FSGYFLIV DFI
Sbjct: 288  YFSKLCYQGLDKRLEKILANRSADKHEHIIKVYKDRLQREIDIICDMGFSGYFLIVEDFI 347

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC 
Sbjct: 348  RWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLTYGLLFERFLNPERVSMPDFDIDFCI 407

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
              RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  P 
Sbjct: 408  QGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETPG 467

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               + + + +     +   AD  V  ++E +QKLEGL R    HAAGIVI    +S   P
Sbjct: 468  TTFN-KILKEGEPLYDEMQADEEVAEVIERAQKLEGLPRSLGKHAAGIVISPTKISDFAP 526

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK---VDLSL 600
            +Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  + A+R      +D++ 
Sbjct: 527  IYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTIKSINAKRPADQKPLDIAD 586

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI  
Sbjct: 587  IPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIPT 646

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMGKK
Sbjct: 647  FIDRKHGRKQIAYLHPLLEEVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGKK 706

Query: 721  IKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
              EEM++Q++ F  GA+K + I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTAW+
Sbjct: 707  KPEEMEQQRKIFKEGAAKYHNIDAKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAWL 766

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYS 838
            K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   +    I   
Sbjct: 767  KAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAISKGTILLG 826

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG+G    + I+ E  A+  F S+ D   RVD +K+N++ LE+L FAGA+     +
Sbjct: 827  LGAIKGLGGEAVKSILTERDAEGEFSSIFDLTRRVDLRKVNKKALEALCFAGAIKDISRN 886

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR--FEN 954
            R     S++   K A +V +      +++F   +        LEK   VE  +++    N
Sbjct: 887  RATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDTELEKECIVEEWNLKELLIN 946

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQKKTRKG 1012
            E++ LG YFSGH +D        +      +     + GN++R +A+M+    ++KT+ G
Sbjct: 947  EKKALGMYFSGHIIDEESHWRNHVSFSDLNKIQQPNMDGNSVRIIASMITPAIRRKTKTG 1006


>gi|319639431|ref|ZP_07994181.1| DNA polymerase III subunit alpha [Neisseria mucosa C102]
 gi|317399326|gb|EFV79997.1| DNA polymerase III subunit alpha [Neisseria mucosa C102]
          Length = 1144

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/1046 (38%), Positives = 598/1046 (57%), Gaps = 64/1046 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALCISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +      ++   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNSNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F++ +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q       +     +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DYLVKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV+ KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L KL
Sbjct: 407  DVDFCQANRGRVIEYVREKYGADAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466

Query: 479  IPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   P+SL+ A+  + + +E   A+   D L+ +++KLE L R    HA G++I   
Sbjct: 467  IPLEANKPLSLEKAMEAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K  
Sbjct: 526  KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKTT 580

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYR
Sbjct: 581  TGDIVDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+DNI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD
Sbjct: 641  PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+
Sbjct: 700  LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F   
Sbjct: 760  ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             N +I Y+L AIKG G      I+ A  +   F  L DFC RV  + +NRR LE+L+  G
Sbjct: 820  PNMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943
            A D    +R  LL ++D           N   K  N  A++ G F       + + L   
Sbjct: 880  AFDSIEPNRAMLLANID-------LAMNNADQKAAN--ANQGGLFDMMEDAIEPVQLIDA 930

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVV 1002
             + + S +   E+ V+GFY SGHP   Y   +R++        +  ++  +++RLA  V 
Sbjct: 931  PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVT 986

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            + +    ++G +I +V+  + + + E
Sbjct: 987  AVRTMMGKRG-KIAFVSLEDLSGQIE 1011


>gi|325141631|gb|EGC64093.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 961-5945]
 gi|325141663|gb|EGC64124.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 961-5945]
 gi|325141697|gb|EGC64157.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 961-5945]
          Length = 1144

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/1046 (38%), Positives = 598/1046 (57%), Gaps = 64/1046 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKTCRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q    +   A+   +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DYLIKLSNE-------GLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KL
Sbjct: 407  DVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   P+ L  A+  + + +E   A+   D L+ +++KLE L R    HA G++I   
Sbjct: 467  IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K  
Sbjct: 526  KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYR
Sbjct: 581  TGDIVDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+DNI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD
Sbjct: 641  PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+
Sbjct: 700  LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F   
Sbjct: 760  ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             N +I Y+L AIKG G      I+ A  +   F  L DFC RV  + +NRR LE+L+  G
Sbjct: 820  PNMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943
            A D    +R  LL ++D           N   K  N  A++ G F       + + L   
Sbjct: 880  AFDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDA 930

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVV 1002
             + + S +   E+ V+GFY SGHP   Y   +R++      + ++ ++  +++RLA  V 
Sbjct: 931  PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKLSKLKPQDSVRLAGFVT 986

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            + +    ++G +I +V+  + + + E
Sbjct: 987  AVRTMMGKRG-KIAFVSLEDLSGQVE 1011


>gi|310828648|ref|YP_003961005.1| DNA polymerase III DnaE [Eubacterium limosum KIST612]
 gi|308740382|gb|ADO38042.1| DNA polymerase III DnaE [Eubacterium limosum KIST612]
          Length = 1146

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/1024 (38%), Positives = 608/1024 (59%), Gaps = 51/1024 (4%)

Query: 40   QQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-S 98
            +  ++A+TD   LF A++F +     GI+P+IGC++ +    + +  +Q +    T P  
Sbjct: 8    EMKSLALTDHGVLFGAVDFYKACLEEGIKPLIGCEVYV----SPRRLDQKEGNIDTNPYH 63

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +VLL    +GY+ L+++VS  ++ D      R+   +L++   EG+I L+    G I R 
Sbjct: 64   LVLLAENNDGYKNLMKVVSEGFI-DGFYYKPRVDHEYLRK-HHEGIICLSACIGGEIPRL 121

Query: 159  FFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRHRGYDRYRESQV----VQLAYTHELPLVA 213
                  Q A +    ++ +FG    ++ +Q HR     +E+QV    +  +  +++PLVA
Sbjct: 122  IIEGQLQKANEICQMYQDIFGKGNFFLEIQDHR---MQKEAQVNEVLIDFSKKYDIPLVA 178

Query: 214  TNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALE 272
            TN+  ++ + D EAHD+L+ +  +  V  ++R R    + YLK+  EM  +F D+PEA+E
Sbjct: 179  TNDVHYVRKADAEAHDILLCIQTAASVDDEERMRFPNNEFYLKSPDEMSRLFIDVPEAIE 238

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
            NT +IA RC+    + +  LP F   E  + +      LR    AGL+ R  +       
Sbjct: 239  NTNKIAERCNVSFDLESAHLPEF---ELPEGEPSAGGYLRKLCEAGLKARYQE------- 288

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
               + ++R+D+EL+VI  M F  YFL+V DFI++AK ++I VGPGRGS AGS+ AY L I
Sbjct: 289  ITPEIKERMDYELDVIHSMGFDNYFLVVWDFIKYAKDHDIMVGPGRGSAAGSLVAYGLDI 348

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T +DPL+++LLFERFLNP+R++MPD D DFC +RR EVI YV  KYG + VAQIITFG++
Sbjct: 349  TTLDPLKYNLLFERFLNPERITMPDIDCDFCYERRQEVIDYVIRKYGADHVAQIITFGTM 408

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRL 511
             A+ A+RDVGRAL MPY+ VD++ K IP  P   ++++ A+ ++S  R+ +  DP V +L
Sbjct: 409  AARGAVRDVGRALNMPYNAVDKVAKEIPMHPGQNITIERALEENSELRKMKENDPEVSKL 468

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            L++++ +EGL RHASTHAAG+VI D+PL + VP+YR+   D+  TQF M  +E  GLIK 
Sbjct: 469  LDMAESMEGLARHASTHAAGVVISDKPLMEYVPLYRN--GDMITTQFPMGLLEDLGLIKM 526

Query: 572  DFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            DFLGL+TLT+++ +L+ +   +G+ ++L  I  +D + Y +L+   TLG+FQLES GM  
Sbjct: 527  DFLGLRTLTVIRDALENIKHSQGMNINLDNIDLEDPKVYKMLSKGDTLGVFQLESKGMIA 586

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
             +  +QP+  EDIIA +SLYRPGP+D I  Y   K   E I  +HP+++P+L  T G ++
Sbjct: 587  FMRDLQPEHFEDIIAGISLYRPGPMDQIPRYIENKKSPEAITYLHPILEPILDVTYGCMV 646

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKK------------IKEEMDKQKERFISGASK 738
            YQEQVMQI + ++G+++  +D++RRAM KK            I  E+D+  E  I GA +
Sbjct: 647  YQEQVMQIFRDVAGFTMGRSDLVRRAMSKKKIDVMNQEGEVFIHGEVDENGETVIDGAVR 706

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             G+ + +A  I+  +  FA Y FNKSHAAAYAVI+YQTAW+K +YP EF+AA M+  MD+
Sbjct: 707  RGVPENVAEQIYAEMKDFAKYAFNKSHAAAYAVIAYQTAWLKCYYPTEFMAALMSSVMDD 766

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-S 857
             +K+ K+ +D R+ +I+++PP VN     F V +N+I + L AIKG+G      I+ A  
Sbjct: 767  EKKVSKYIEDCRKNDIKVLPPDVNVSYDKFSVKNNKICFGLGAIKGLGKNAIVSIVNARE 826

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
             D  F    DFC +VD K LN+R++E L+ +GA D  G +R QLL   + +    Q  ++
Sbjct: 827  TDGAFKGFRDFCEKVDLKALNKRMVEGLIKSGAFDYTGSTRAQLLLGAERMVDQVQREKR 886

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
            +R     ++      +   +  L   +      R   E+ VLG Y +GHPL+ Y+  L++
Sbjct: 887  DRLAGQISLLDFGGNSSLKEDFLPDVAPFTKEQRLALEKEVLGLYVTGHPLEKYENTLKE 946

Query: 978  MG------IKGYEE-SVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                    +  YE+   + IR G  + +  ++   + + TR G  + ++T  +     E 
Sbjct: 947  KTNLNSSMLDSYEDLRDSGIRDGGAVIIGGLIDDVKNQITRNGKLMAFMTLEDLYGRLEV 1006

Query: 1030 NFFP 1033
              FP
Sbjct: 1007 VVFP 1010


>gi|325204784|gb|ADZ00238.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M01-240355]
          Length = 1144

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/1035 (38%), Positives = 595/1035 (57%), Gaps = 42/1035 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F     D + 
Sbjct: 234  PRDFTPGQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLF--PTPDGLS 291

Query: 305  KEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +++   +L NK +    V+L      +     +Y++RLDFELN+I +MKF GYFLIV DF
Sbjct: 292  RDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDF 351

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+DFC
Sbjct: 352  INWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFC 411

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP + 
Sbjct: 412  QANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEA 471

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              P+SL  A+  + + +E   A+   D L+ +++KLE L R    HA G++I    +S  
Sbjct: 472  NKPLSLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDY 530

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------V 596
             P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K      +
Sbjct: 531  SPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNTTGDII 585

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+D
Sbjct: 586  DVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMD 645

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            NI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRA
Sbjct: 646  NIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRA 704

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQT
Sbjct: 705  MGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQT 764

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRI 835
            AW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +I
Sbjct: 765  AWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKI 824

Query: 836  YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y+L AIKG G      I  A  +   F  L DFC RV  + +NRR LE+L+  GA D  
Sbjct: 825  RYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSI 884

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R  LL ++D     A   +K        +F   +    + + L    + + S +   
Sbjct: 885  EPNRAMLLANIDLAMNNAD--QKAANTNQGGLFDMMEDAI-EPVRLIDAPMWSESEKLAE 941

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGS 1013
            E+ V+GFY SGHP   Y   +R++        +  ++  +++RLA  V + +    ++G 
Sbjct: 942  EKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVTAVRTMMGKRG- 996

Query: 1014 RIGWVTFSEPAKEYE 1028
            +I +V+  + + + E
Sbjct: 997  KIAFVSLEDLSGQVE 1011


>gi|254671593|emb|CBA09263.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha153]
          Length = 1144

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/1035 (38%), Positives = 595/1035 (57%), Gaps = 42/1035 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F     D + 
Sbjct: 234  PRDFTPGQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLF--PTPDGLS 291

Query: 305  KEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +++   +L NK +    V+L      +     +Y++RLDFELN+I +MKF GYFLIV DF
Sbjct: 292  RDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDF 351

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+DFC
Sbjct: 352  INWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFC 411

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP + 
Sbjct: 412  QANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEA 471

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              P+SL  A+  + + +E   A+   D L+ +++KLE L R    HA G++I    +S  
Sbjct: 472  NKPLSLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDY 530

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------V 596
             P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K      +
Sbjct: 531  SPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNTTGDII 585

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+D
Sbjct: 586  DVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMD 645

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            NI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRA
Sbjct: 646  NIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRA 704

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQT
Sbjct: 705  MGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQT 764

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRI 835
            AW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +I
Sbjct: 765  AWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKI 824

Query: 836  YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y+L AIKG G      I  A  +   F  L DFC RV  + +NRR LE+L+  GA D  
Sbjct: 825  RYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSI 884

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R  LL ++D     A   +K        +F   +    + + L    + + S +   
Sbjct: 885  EPNRAMLLANIDLAMNNAD--QKAANTNQGGLFDMMEDAI-EPVRLIDAPMWSESEKLAE 941

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGS 1013
            E+ V+GFY SGHP   Y   +R++        +  ++  +++RLA  V + +    ++G 
Sbjct: 942  EKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVTAVRTMMGKRG- 996

Query: 1014 RIGWVTFSEPAKEYE 1028
            +I +V+  + + + E
Sbjct: 997  KIAFVSLEDLSGQVE 1011


>gi|268679272|ref|YP_003303703.1| DNA polymerase III subunit alpha [Sulfurospirillum deleyianum DSM
            6946]
 gi|268617303|gb|ACZ11668.1| DNA polymerase III, alpha subunit [Sulfurospirillum deleyianum DSM
            6946]
          Length = 1182

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/1054 (37%), Positives = 620/1054 (58%), Gaps = 58/1054 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            + HL +H+ YSLL+GA  +  +  K+ A    ++AITD  N+F AL+F +     GI+PI
Sbjct: 6    YTHLHLHTEYSLLDGANKIGKLAKKLKAQGVGSVAITDHGNMFGALDFYKTMRKEGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129
            IG +  I  QD++     G         + L      GY+ L+ L S  Y+  +G     
Sbjct: 66   IGIEAYIHNQDDI-----GDKTTKQRFHLCLFAKNEIGYKNLMYLSSMSYI--KGFYYYP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS----------QVAEKRLLTFKKLFG 179
            RI    L+E  +EGLI  +    G ++     N+           + A++  L +K +FG
Sbjct: 119  RINKQLLKE-HSEGLICSSACLQGEVNWHLNLNNKRNVQFGAKGYERAKEVALEYKAIFG 177

Query: 180  DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            D  Y+ + RH   D+ + +  ++++A    + ++ATN++ +L  +D EAH+  M +A + 
Sbjct: 178  DDFYLEIMRHGINDQMFIDDNILRIAKETGIKVIATNDTHYLEPDDAEAHEAFMCIAMNK 237

Query: 239  VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-I 296
                 +R R +  + ++K+  ++  +F D+PE LENT EI  +C+  +++  P  P+F  
Sbjct: 238  EFDDPNRLRHSVHEFFVKSPEQIADLFVDIPEVLENTQEIVDKCNLEIKLGDPTPPKFKF 297

Query: 297  EKEC---DDIQKEEENEL-RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
             KE    + +  E +++   +K   GL+ RL     +K    ++Y+ RL+ E++VI  MK
Sbjct: 298  TKEYAAREGLSFESDDDFFAHKCREGLKERLKYVDASK---HEEYKARLEREISVICTMK 354

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GY LIV DFI+ AK   +PVGPGRGS AGS+ AY+L ITD+DP+ ++LLFERFLNP+R
Sbjct: 355  FPGYMLIVWDFIREAKSRGVPVGPGRGSAAGSLVAYSLFITDLDPMPYNLLFERFLNPER 414

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD D+DFCQ RR E+I YV  KYG   VAQ+ITFG L AK  +RDV R L +PY++ 
Sbjct: 415  ISMPDIDVDFCQSRRGEIIDYVVEKYGRYNVAQVITFGKLLAKGVIRDVARVLAIPYAEA 474

Query: 473  DRLCKLIPNDPAHPVSLQAIA-------------DDSRFREARLADPSVDRLLEISQKLE 519
            D + KLIP++    ++L  I               + + RE    DP + R+ + +  LE
Sbjct: 475  DAMAKLIPDELG--ITLNGIGVEGEEGFKAGAYQKEPKLRELIERDPRMQRVWKFALALE 532

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R++  HAAG+VI D  L    P+Y+    D  VTQ+++ ++E   LIKFDFLGLKTL
Sbjct: 533  GLNRNSGMHAAGVVISDEELWHKTPLYQPSGEDHLVTQYSLNFLEDVDLIKFDFLGLKTL 592

Query: 580  TLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +L  +  R  K +D + +  +D + Y L+ +  T+G+FQ+ESSGM+   E ++P+
Sbjct: 593  TVIDNALKLIKARYNKTIDFNALDLNDPKVYELIQSGDTIGLFQIESSGMQSLNERLKPN 652

Query: 639  CIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIY 691
              ED+IA+++LYRPGP+++ ++  + +RK+G++++         PL  P+L+ T GVI+Y
Sbjct: 653  TFEDLIAVLALYRPGPMESGMLDDFIDRKHGRKEVTYFFDEFTKPL-QPILEPTYGVIVY 711

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQI Q + G+SL E+D++RRAMGKK  + M ++ E F  GA K G+ +  A+ +F 
Sbjct: 712  QEQVMQIVQSIGGFSLGESDLIRRAMGKKKIDYMKQKAEEFADGAVKQGLDRAHAIELFG 771

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            L+ KFA YGFNKSH+AAYA+I++QTA++K +YP EF+AA +T E DN +KI K+  + ++
Sbjct: 772  LIEKFAGYGFNKSHSAAYALITFQTAYLKCYYPQEFMAALLTSEQDNTDKIVKYIDEVKR 831

Query: 812  FNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
              I+++PPS+    ++F       G   I + + AIKGVG      I+EA AD PF  + 
Sbjct: 832  LGIKLLPPSIQHSLIEFSAITDSDGCEAILFGMGAIKGVGNAAISKILEARADAPFSDMS 891

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF SR+D  K+N++VLESL+ +G+ D FGYSR  LL+S+D I + +    + +     ++
Sbjct: 892  DFISRIDGSKVNKKVLESLIKSGSFDGFGYSRRALLESIDTIIEASGECSRAKKMAEYSL 951

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            F   +   S  + +E  S  +S    E E+  +GFY SGHPLD ++  + +M      E 
Sbjct: 952  FGDSEEMTSVAVKIEPISEFDSKRMLELEKETIGFYISGHPLDAFRAQIDEMNYMLSSEK 1011

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                 G+       V S  +K ++KG++ G V+ 
Sbjct: 1012 DQIEDGSKALFIGKVESITEKMSKKGNKFGVVSL 1045


>gi|257468959|ref|ZP_05633053.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|317063207|ref|ZP_07927692.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|313688883|gb|EFS25718.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
          Length = 1141

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/980 (40%), Positives = 599/980 (61%), Gaps = 41/980 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +FVHL +H+ YSLL+G   +++ LD+       AIAITD  NLF  LE  +KA   GI+P
Sbjct: 4   NFVHLHLHTEYSLLDGVGKIDDYLDRAKVLGMQAIAITDHGNLFGVLELYKKAMKKGIKP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128
           +IG +  +       M  +    F     +VLL    +GYQ L+++ S  Y+  +G    
Sbjct: 64  VIGLEAYVS---EFSMLEKDGRIF----HLVLLAENNKGYQNLLKISSESYI--KGFYYK 114

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-FKKLFG-DRLYVNL 186
            RI   +L+   +EG+I L+    G I R    N S+     ++  +  +FG D  Y+ +
Sbjct: 115 PRIDKEFLKN-HSEGIIALSACMQGEIPRRILDNESEEKVDEIVNEYVDIFGKDNFYIEV 173

Query: 187 QRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           Q +  +G     E ++  LA  H+L ++ATN++ +++E ++   D+L+ V     VS + 
Sbjct: 174 QANGVKGQTALNE-KLYDLAQKHQLKMIATNDTHYVNEGEHTLQDILICVQTGAKVSDEK 232

Query: 245 RPRVTPDH-YLKNRSEMV-SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           R R+  D  +LK+R +++  + +   EA+ NTVEIA RC+  ++      P +    C  
Sbjct: 233 RMRIETDELFLKSREQIIDGLGAKYLEAVNNTVEIAERCNVDIEFGKFKFPDYKIPSC-- 290

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             K  E  LR     GL  R  QG            +R+++EL+VI +M ++ YF++V D
Sbjct: 291 -AKSIEEFLRKLVYFGLSKRYPQGLTVT------VLERVEYELSVIEKMGYAAYFVVVWD 343

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           FI +AK+N IP+GPGRGS AGS+ AYAL IT++DPL ++L+FERFLNP+R+SMPD DID 
Sbjct: 344 FIDYAKRNRIPIGPGRGSAAGSLVAYALRITELDPLSYNLIFERFLNPERISMPDIDIDI 403

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           CQ+RR EVI YV  KYG ++VAQIITFG+++A+AA+RDVGR +    S++D + KL+P +
Sbjct: 404 CQERRQEVIEYVIRKYGEDKVAQIITFGTMKARAAIRDVGRVMDTSLSKIDSVAKLVPFN 463

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +L  + +   F+   L DP + ++++IS +LE   RHAS HAAGIVI   PL+  
Sbjct: 464 ATIQQTLNNVEE---FKNMYLNDPEIQKVIDISARLENKVRHASVHAAGIVITKDPLTDT 520

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
           VP+Y D ++ +  TQ+ MK +E  GL+K DFLGL+ LT LQ+++D++ +  G  ++LS I
Sbjct: 521 VPLYSDNKNKIVSTQYQMKELEDLGLLKMDFLGLRNLTNLQRAIDYIKEDLGEDIELSEI 580

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
           P +  + Y +L+   T G+FQLES G+R+ L  ++PD  EDIIAL++LYRPGP+ + +V 
Sbjct: 581 PLNSKKVYEMLSRGDTSGVFQLESQGIRKILLKLKPDRFEDIIALLALYRPGPLGSGMVD 640

Query: 661 -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            + N KNG  +I+  HP ++  LKET GVI+YQEQVM+IA +++ YSL EAD+LRRAMGK
Sbjct: 641 DFINGKNGISEIIYPHPSLELTLKETYGVILYQEQVMKIANIMANYSLGEADLLRRAMGK 700

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K  + M++ +E+F+  + +NG +K  A+ +FEL+ KFA YGFNKSH+AAYA+I+Y TA+ 
Sbjct: 701 KNVQIMEENREKFVERSMENGYTKEKAIEMFELIDKFAGYGFNKSHSAAYALIAYWTAYF 760

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
           K +Y   + A+ MT EM +VE I  + +DA+  N+++  P VN     F+V    I +SL
Sbjct: 761 KAYYMKHYYASLMTSEMSHVEDIAFYMEDAKAHNMKLHLPDVNRASSKFRVDKEGIIFSL 820

Query: 840 AAIKGVGT-TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
           AAIK VG   +A+ + E + +  + + EDF  R     LN++ LESL+ AGALD    +R
Sbjct: 821 AAIKNVGEGVSAKILEECNENGDYKNFEDFVVRTRKHGLNKKALESLILAGALDSLPGNR 880

Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFENE 955
            Q  +S+D I  YA    K    +  N+F   K   G F+    + ++S+E    R   E
Sbjct: 881 KQKFESVDKILDYATRKIKEDEIQQMNLFGEAKSSLGVFTLP-QVPEYSLEELLAR---E 936

Query: 956 QRVLGFYFSGHPLDVYKPIL 975
           +  LGFYFS HPLD Y+ ++
Sbjct: 937 KEYLGFYFSAHPLDNYRRLI 956


>gi|56707551|ref|YP_169447.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis SCHU S4]
 gi|110670022|ref|YP_666579.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis FSC198]
 gi|254370074|ref|ZP_04986080.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis FSC033]
 gi|56604043|emb|CAG45035.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis SCHU S4]
 gi|110320355|emb|CAL08418.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis FSC198]
 gi|151568318|gb|EDN33972.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis FSC033]
 gi|282158705|gb|ADA78096.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis NE061598]
          Length = 1159

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/1022 (39%), Positives = 606/1022 (59%), Gaps = 41/1022 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRI 131
             +L +D            T F  +  +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVD------------TEF-GICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              SWL E+  E +I L GG  G + +A        A++ +    ++FG   Y+       
Sbjct: 111  PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170

Query: 192  YDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247
            Y+    Y E + ++ A  + L  VATN ++F+  +DY+ H++   +   +T++ +  + +
Sbjct: 171  YENEGLYNE-KALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP  +       +KE 
Sbjct: 230  FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPT-VNIPAGLTEKEY 288

Query: 308  ENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             ++L      GL+ RL +      A    +  + Y+ RL  E+++I  M F GYFLIV D
Sbjct: 289  FSKL---CYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 346  FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  
Sbjct: 406  CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P           ++ + E + AD  V  ++E +QKLEGL R    HAAGIVI    +S  
Sbjct: 466  PGTTFKKILHEGETLYEEVQ-ADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK---VDL 598
             P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  + A+R      +D+
Sbjct: 525  APVYCENKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI
Sbjct: 585  ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + +RK+ +++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMG
Sbjct: 645  PTFIDRKHSRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KK  EEM+KQ++ F  GA+K + I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTA
Sbjct: 705  KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIY 836
            W+K HYP E++AA M+ +M N +++ KF  D +  +I ++ P+VN    D   V    I 
Sbjct: 765  WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMSITVLAPNVNKSVYDCIAVSKGTIL 824

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L AIKG+G    + I+ E      F S+ D C RVD +K+N++ LE+L +AGA+    
Sbjct: 825  LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR--F 952
             +R     S++   K A +V +      +++F   +        LE+   VE  +++   
Sbjct: 885  KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQKKTR 1010
             NE++ LG YFSGH +D        +     E+     + GN++R +A+M+    ++KT+
Sbjct: 945  INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004

Query: 1011 KG 1012
             G
Sbjct: 1005 TG 1006


>gi|296313886|ref|ZP_06863827.1| DNA polymerase III, alpha subunit [Neisseria polysaccharea ATCC
            43768]
 gi|296839514|gb|EFH23452.1| DNA polymerase III, alpha subunit [Neisseria polysaccharea ATCC
            43768]
          Length = 1144

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/1046 (38%), Positives = 596/1046 (56%), Gaps = 64/1046 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPECPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q       +     +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DYLIKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KL
Sbjct: 407  DVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   P+ L  A+  + + +E   A+   D L+ +++KLE L R    HA G++I   
Sbjct: 467  IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K  
Sbjct: 526  KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKST 580

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYR
Sbjct: 581  TGDIVDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+DNI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD
Sbjct: 641  PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+
Sbjct: 700  LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F   
Sbjct: 760  ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             N +I Y+L AIKG G      I+ A  +   F  L DFC RV  + +NRR LE+L+  G
Sbjct: 820  PNMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943
            A D    +R  LL ++D           N   K  N  A++ G F       + + L   
Sbjct: 880  AFDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLVDA 930

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVV 1002
             + + S +   E+ V+GFY SGHP   Y   +R++      + ++ ++  +++RLA  V 
Sbjct: 931  PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKLSKLKPQDSVRLAGFVT 986

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            + +    ++G +I +V+  + + + E
Sbjct: 987  AVRTMMGKRG-KIAFVSLEDLSGQIE 1011


>gi|254804357|ref|YP_003082578.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha14]
 gi|254667899|emb|CBA04031.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha14]
          Length = 1144

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/1046 (38%), Positives = 597/1046 (57%), Gaps = 64/1046 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTEAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q    +   A+   +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DYLIKLSNE-------GLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KL
Sbjct: 407  DVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   P+ L  A+  + + +E   A+   D L+ +++KLE L R    HA G++I   
Sbjct: 467  IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K  
Sbjct: 526  KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYR
Sbjct: 581  TGDIIDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+DNI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD
Sbjct: 641  PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+
Sbjct: 700  LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F   
Sbjct: 760  ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             N +I Y+L AIKG G      I  A  +   F  L DFC RV  + +NRR LE+L+  G
Sbjct: 820  PNMKIRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943
            A D    +R  LL ++D           N   K  N  A++ G F       + + L   
Sbjct: 880  AFDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDA 930

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVV 1002
             + + S +   E+ V+GFY SGHP   Y   +R++      + ++ ++  +++RLA  V 
Sbjct: 931  PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKLSKLKPQDSVRLAGFVT 986

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            + +    ++G +I +V+  + + + E
Sbjct: 987  AVRTMMGKRG-KIAFVSLEDLSGQVE 1011


>gi|255322503|ref|ZP_05363648.1| DNA polymerase III subunit alpha [Campylobacter showae RM3277]
 gi|255300411|gb|EET79683.1| DNA polymerase III subunit alpha [Campylobacter showae RM3277]
          Length = 1326

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1003 (38%), Positives = 598/1003 (59%), Gaps = 48/1003 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  +  +   +      A AITD  N+F A++F +     GI+P+
Sbjct: 7   FTHLHLHTEYSLLDGANRIKELAKTLKKQGVKAAAITDHGNMFGAIDFYKTMKNEGIKPL 66

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  I   + L     G         + L+     GY+ L+ L S  Y+ +      R
Sbjct: 67  IGIEAYIHNGEEL-----GDKSTKQRFHLCLIAKNEIGYKNLMYLSSMSYI-EGFYYYPR 120

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI-------DRAFFFNSS--QVAEKRLLTFKKLFGDR 181
           I    L+E  +EG+I  +    G +       +R   F +   + A++  L +K++FGD 
Sbjct: 121 INKKILKE-HSEGIICSSACLQGEVNWNLNQSERNLRFGAGGYEAAKEAALWYKEVFGDD 179

Query: 182 LYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            Y+ + RH   D+ R + ++++LA    + ++ATN++ +  ++  +AH+V M +A + ++
Sbjct: 180 FYLEIMRHGIGDQRRIDDEILRLAKELNIKVIATNDTHYTFKQRADAHEVFMCIAMNKLL 239

Query: 241 SQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---- 295
              +R R +  + Y+K  ++M  +F+D+PEA+ NT EI  +C   +++     P F    
Sbjct: 240 DDPNRLRHSVHEFYVKTPAQMSELFADIPEAVTNTQEIVDKCDLSIKLGDATPPNFKFTL 299

Query: 296 ---IEKECDDIQKEEENELRNKAV-------AGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
               E+     + ++   + N +V        GLE RL           ++YR RL  E+
Sbjct: 300 EYAAERNLSLPEPDKRYSIPNDSVLFEHECRQGLEERLK---FVTAERHEEYRTRLQREI 356

Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
           ++I +M F GY +IV DFI  AKK  +PVGPGRGS AGS+ AY+L ITD+DPL ++LLFE
Sbjct: 357 DIINKMNFPGYMMIVWDFINEAKKRGVPVGPGRGSAAGSLVAYSLKITDLDPLPYNLLFE 416

Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
           RFLNP+R+SMPD D+DFCQ+RR E+I YV  KYG   VAQ+ITFG L AK  +RDV R  
Sbjct: 417 RFLNPERVSMPDIDVDFCQNRRGEIIDYVIEKYGKFNVAQVITFGKLLAKGVIRDVARVC 476

Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            MPY++ D + KLIP++    +  QA   + +  E   ++ + +R+ + +  LEGL R+A
Sbjct: 477 DMPYAEADAMAKLIPDELGITLE-QAFEKEPKIGELIASNSNANRIWKFALDLEGLNRNA 535

Query: 526 STHAAGIVIGDRPLSQLVPMYR--DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
             HAAG+VI +  L    P++R  +   D  VTQ+++K++E   LIKFDFLGLKTLT++ 
Sbjct: 536 GMHAAGVVISNEELWNKTPLFRQPNAEEDHFVTQYSLKYLEDVDLIKFDFLGLKTLTVID 595

Query: 584 KSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            ++  + +R G ++    +  +D +TY  +++  TLG+FQ+ES GM++    M+PDC ED
Sbjct: 596 NAVKLVKKRFGKEIIWEQVNKNDPKTYETISSGQTLGLFQIESEGMQKVGADMRPDCFED 655

Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
           IIA++SLYRPGP+D I  +  RK+G E I  I P + P+L+ T GVI+YQEQVMQI Q +
Sbjct: 656 IIAMISLYRPGPMDLIPDFIKRKHGLEPITYIFPELQPILEPTYGVIVYQEQVMQIVQTI 715

Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            G+SL  AD++RRAMGKKIKEEMD+ K +FI GA   G+    A  +FEL+  FA YGFN
Sbjct: 716 GGFSLGGADLVRRAMGKKIKEEMDRLKGKFIEGAEAQGLDGKKADELFELILHFASYGFN 775

Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           KSHAAAY  +++QTA++KT+YP EF+AA +T E  N +KI ++  + ++ +I I+PPSVN
Sbjct: 776 KSHAAAYTYVTFQTAYLKTYYPAEFMAALITSEETNADKISRYIDECKRLDIAILPPSVN 835

Query: 823 TPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
               +F V    G + I Y L AIKGVG     +I+E  A   F  ++DF SRVD+ K+N
Sbjct: 836 KSAKEFSVVSEGGKDAIIYGLGAIKGVGGAAIENILEEQAKGEFKDIDDFVSRVDNFKVN 895

Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
           ++V ESL+ +G+ D FG +R  +L +LDNI +  +     + N  E++F  ++   + K 
Sbjct: 896 KKVFESLIKSGSFDSFGLTRKMMLNNLDNIVEACKNAATIKKNAAESLFGDDESMATVKT 955

Query: 939 TLEKFSVE---NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
           +L +   E    + ++FE E   +G Y SGHPLD Y+  + K+
Sbjct: 956 SLVRDDSELELKTKLKFELES--VGIYLSGHPLDEYREQISKI 996


>gi|325133602|gb|EGC56263.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M13399]
 gi|325143829|gb|EGC66145.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M01-240013]
 gi|325206743|gb|ADZ02196.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M04-240196]
          Length = 1144

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/1039 (38%), Positives = 590/1039 (56%), Gaps = 50/1039 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F     D + 
Sbjct: 234  PRDFTPGQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLF--PTPDGLS 291

Query: 305  KEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +++   +L NK +    V+L      +     +Y++RLDFELN+I +MKF GYFLIV DF
Sbjct: 292  RDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDF 351

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+DFC
Sbjct: 352  INWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFC 411

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP + 
Sbjct: 412  QANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEA 471

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              P+SL+   +     +  +     D L+ +++KLE L R    HA G++I    +S   
Sbjct: 472  NKPLSLEKAMEAEPQIQELIEVEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYS 531

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VD 597
            P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K      +D
Sbjct: 532  PVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNTTGDIID 586

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DN
Sbjct: 587  VGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDN 646

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAM
Sbjct: 647  IPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAM 705

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTA
Sbjct: 706  GKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTA 765

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIY 836
            W+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +I 
Sbjct: 766  WLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKIR 825

Query: 837  YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y+L AIKG G      I  A  +   F  L DFC RV  + +NRR LE+L+  GA D   
Sbjct: 826  YALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIE 885

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFSVENSS 949
             +R  LL ++D           N   K  N  A++ G F       + + L      + S
Sbjct: 886  PNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDLPRWSES 936

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             +   E+ V+GFY SGHP   Y   +R++     +        +++RLA  V + +    
Sbjct: 937  EKLAEEKTVIGFYLSGHPFGPYAQEVRQIAPTKLDRLKPQ---DSVRLAGFVTAVRTMMG 993

Query: 1010 RKGSRIGWVTFSEPAKEYE 1028
            ++G +I +V+  + + + E
Sbjct: 994  KRG-KIAFVSLEDLSGQVE 1011


>gi|328676562|gb|AEB27432.1| DNA polymerase III alpha subunit [Francisella cf. novicida Fx1]
          Length = 1159

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/1022 (39%), Positives = 604/1022 (59%), Gaps = 41/1022 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRI 131
             +L +D            T F  +  +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVD------------TEF-GICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              SWL E+  E +I L GG  G + +A        A++ +    ++FG   Y+       
Sbjct: 111  PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIINQNIEIFGTNNYIIEIHKLE 170

Query: 192  YDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247
            Y+    Y E + ++ A  + L  VATN ++F+  +DY+ H++   +   +T++ +  + +
Sbjct: 171  YENEGLYNE-KALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP  ++      +KE 
Sbjct: 230  FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPT-VDIPAGLTEKEY 288

Query: 308  ENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             ++L      GL+ RL +      A    +  + Y+ R+  E+++I  M F GYFLIV D
Sbjct: 289  FSKL---CYQGLDKRLEKILENRSADKHEHIIKVYKDRVQREIDIICDMGFPGYFLIVED 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 346  FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  
Sbjct: 406  CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P      + + +     E   AD  V  ++E +QKLEGL R    HAAGIVI    +S  
Sbjct: 466  PGTTFK-KILHEGEPLYEEMQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR----GVKVDL 598
             P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +       +D+
Sbjct: 525  APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINTKRPADQKPLDI 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI
Sbjct: 585  ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMG
Sbjct: 645  PTFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KK  EEM+KQ++ F  GA+K + I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTA
Sbjct: 705  KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIY 836
            W+K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I 
Sbjct: 765  WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTIL 824

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L AIKG+G    + I+ E      F S+ D C RVD +K+N++ LE+L +AGA+    
Sbjct: 825  LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR--F 952
             +R     S++   K A +V +      +++F   +        LE+   VE  +++   
Sbjct: 885  KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQKKTR 1010
             NE++ LG YFSGH +D        +     E+     + GN++R +A+M+    ++KT+
Sbjct: 945  INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004

Query: 1011 KG 1012
             G
Sbjct: 1005 TG 1006


>gi|261401655|ref|ZP_05987780.1| DNA polymerase III, alpha subunit [Neisseria lactamica ATCC 23970]
 gi|269208234|gb|EEZ74689.1| DNA polymerase III, alpha subunit [Neisseria lactamica ATCC 23970]
          Length = 1144

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/1045 (38%), Positives = 593/1045 (56%), Gaps = 62/1045 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            P+    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PVGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTEAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q       +     +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DYLIKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++  D+L KL
Sbjct: 407  DVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKL 466

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   P+SL  A+  + + +E   A+   D L+ +++KLE L R    HA G++I   
Sbjct: 467  IPLEANKPLSLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K  
Sbjct: 526  KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKST 580

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYR
Sbjct: 581  TGDIVDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+DNI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD
Sbjct: 641  PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+
Sbjct: 700  LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-V 830
            ISYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F   
Sbjct: 760  ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D +I Y+L AIKG G      I  A  +   F  L DFC RV  + +NRR LE+L+  G
Sbjct: 820  PDMKIRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943
            A D    +R  LL ++D           N   K  N  A++ G F       + + L   
Sbjct: 880  AFDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLVDA 930

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
             + + S +   E+ V+GFY SGHP   Y   + ++     +        +++RLA  V +
Sbjct: 931  PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVCQIAPTKLDRLKPQ---DSVRLAGFVTA 987

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYE 1028
             +    ++G +I +V+  + + + E
Sbjct: 988  VRTMMGKRG-KIAFVSLEDLSGQVE 1011


>gi|241759501|ref|ZP_04757605.1| DNA polymerase III, alpha subunit [Neisseria flavescens SK114]
 gi|241320283|gb|EER56616.1| DNA polymerase III, alpha subunit [Neisseria flavescens SK114]
          Length = 1144

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/1046 (38%), Positives = 596/1046 (56%), Gaps = 64/1046 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAVDVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F +  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPNAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q    +   A+   +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DYLVKLSNE-------GLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KL
Sbjct: 407  DVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   P+ L  A+  + + +E   A+   D L+ +++KLE L R    HA G++I   
Sbjct: 467  IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K  
Sbjct: 526  KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYR
Sbjct: 581  TGDIVDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+DNI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD
Sbjct: 641  PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+
Sbjct: 700  LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F   
Sbjct: 760  ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             N +I Y+L AIKG G      I+ A  +   F  L DFC RV  + +NRR LE+L+  G
Sbjct: 820  PNMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943
            A D    +R  LL ++D           N   K  N  A++ G F       + + L   
Sbjct: 880  AFDSIEPNRAMLLANID-------LAMNNADQKAAN--ANQGGLFDMMEDAIEPVQLIDA 930

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVV 1002
             + + S +   E+ V+GFY SGHP   Y   +R++        +  ++  +++RLA  V 
Sbjct: 931  PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVT 986

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            + +    ++G +I +V+  + + + E
Sbjct: 987  AVRTMMGKRG-KIAFVSLEDLSGQIE 1011


>gi|317969748|ref|ZP_07971138.1| DNA polymerase III subunit alpha [Synechococcus sp. CB0205]
          Length = 1179

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/1069 (38%), Positives = 611/1069 (57%), Gaps = 66/1069 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++ +      PAIA+TD   ++ A+E  +    + ++P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPAMVKRAEELGMPAIALTDHGVMYGAIELLKLCRGSSVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPS------IVLLVSTAEGYQRLIELVSRMYLLD 123
            IIG ++ +           G    P  P       +V+L   A GY+ L++L S  +L  
Sbjct: 62   IIGNEMYV---------INGSIDDPNPPKKERRYHLVVLAKNAVGYRNLVKLTSISHLRG 112

Query: 124  QGKQSV--RICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
               + +  R C+     E  +EGLI+ T    G I +A       VA      ++ +FGD
Sbjct: 113  MRGRGIFSRACIDKPTLERHSEGLIIATACLGGEIPQAILRGRPDVARDVARWYQGVFGD 172

Query: 181  RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ +Q H    DR    ++ +++    +PLVATN++ +L+  D EAHD L+ V    +
Sbjct: 173  DFYLEIQDHGSPEDRIVNVEMAKISKELGIPLVATNDAHYLTSNDAEAHDALLCVLTGKL 232

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILP 293
            V+ + R R T   ++K+  EM+ +F+D      + EA+ NT  +A +      +    +P
Sbjct: 233  VTDEKRLRYTGTEFIKSEQEMLGLFADHLEPEVVAEAVANTALVAEKVEDYDILGRYQMP 292

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            RF   E         + LR     GL  RL       G+ A  Y +RL FEL V+ +M F
Sbjct: 293  RFPIPE----GHTPVSYLREVTEQGLRARLGLPE-GSGFEAT-YGERLAFELQVMEQMGF 346

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL+V D+I++A+ N IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R 
Sbjct: 347  PTYFLVVWDYIRFARDNGIPVGPGRGSAAGSLVAYALGITNIDPVTNGLLFERFLNPERK 406

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   D
Sbjct: 407  SMPDIDTDFCIERRGEVIDYVTERYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDAD 466

Query: 474  RLCKLIPNDPAHPVSL-QAIADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            RL KLIP     P  L + I ++S    FRE  L DP+V R ++++ ++EG  +    HA
Sbjct: 467  RLAKLIPVVRGKPAKLKEMIGEESPAPEFREKYLGDPAVKRWVDMAMRIEGTNKTFGVHA 526

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            AG+VI   PL ++VP+ R+    + +TQ+ M+ +E  GL+K DFLGLK LT++ K++D +
Sbjct: 527  AGVVIAADPLDEVVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTVDLV 585

Query: 590  AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q  GV +D   +P DD  T+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++
Sbjct: 586  KQSSGVSIDPDALPLDDEGTFGLLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILA 645

Query: 649  LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            LYRPGP+D  ++  + NRK+G+E I   H  ++P+L+ET G+++YQEQ+M+IAQ L+GYS
Sbjct: 646  LYRPGPLDAGLIPKFINRKHGREAIDFAHAKLEPILQETYGIMVYQEQIMKIAQDLAGYS 705

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L EAD+LRRAMGKK   EM K ++ F+ GAS+ G+   IA  +F+ +  FA+Y FNKSH+
Sbjct: 706  LGEADLLRRAMGKKKVSEMQKHRDIFVKGASERGVDAKIADELFDQMVLFAEYCFNKSHS 765

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
             AY  ++YQTA++K HYPV ++AA +T+   + +K++++  +     I++MPP VN   +
Sbjct: 766  TAYGAVTYQTAYLKAHYPVAYMAALLTVNAGSTDKVQRYISNCNAMGIEVMPPDVNASGI 825

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            DF    +RI + L+A++ +G    R ++EA S+D PF SL D C R+    LNRR LE+L
Sbjct: 826  DFTPVGDRILFGLSAVRNLGEGAIRALLEARSSDGPFQSLADLCDRIPGTTLNRRSLEAL 885

Query: 886  VFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----------AHE-KG 932
            +  GA+D      +R QL+  LD I  +A    ++R +   N+F          A E +G
Sbjct: 886  IHCGAMDALEPEANRAQLMADLDLIVDWASSRARDRASGQGNLFDLFAAPASGDAEETQG 945

Query: 933  TFSDKITLEKFS-----VENSSVRFENEQRVLGFYFSGHPL-DVYKPI--LRKMGIKGYE 984
              SD  T  K +          +R E E  ++GFY S HPL  + +P+  L  +G+ G E
Sbjct: 946  GGSDLSTAPKAAPVKDYPPTEKLRLEKE--LVGFYLSDHPLKQLTRPVQLLSPVGLGGLE 1003

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            E     R   + +  MV   +   TRKG R+  +   + +   EA  FP
Sbjct: 1004 EQADKAR---VSVVGMVSGLRPVTTRKGDRMAVLQLEDLSGSCEAVVFP 1049


>gi|257453752|ref|ZP_05619033.1| DNA polymerase III subunit alpha [Enhydrobacter aerosaccus SK60]
 gi|257448844|gb|EEV23806.1| DNA polymerase III subunit alpha [Enhydrobacter aerosaccus SK60]
          Length = 1189

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/1038 (38%), Positives = 610/1038 (58%), Gaps = 78/1038 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVH  +H+ +S+ +  + +  ++    AD Q A+AI+D +NL++ ++F +    AGI+P
Sbjct: 2    AFVHFGIHTEFSITDSIVRIKALVKAAKADNQLALAISDLSNLYATVKFYKACLDAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++         + N   T       + LL S   GY+ L  +VS+ ++  Q     
Sbjct: 62   IIGSEV--------WLENDSTT-------VTLLASNQVGYKNLTNIVSKGFVDGQVMGKP 106

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   W+ E  +EG+I+L    S  + +A      + A+  L  ++  F DR+Y  ++R 
Sbjct: 107  IIQRDWIFE-RSEGVIVLFTEKSD-VGQAMLSAHPEKADSLLQQWQTTFADRVYFAIKRT 164

Query: 190  R--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +    DR+ E Q ++++   ++P++A N+  FL+E+D+EAH+  + +A+S V++  +RPR
Sbjct: 165  QRANEDRFIE-QAIRMSNAFDVPIIAHNDVRFLTEDDFEAHEARVCIANSQVLADPNRPR 223

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P+ YLK + +M ++FSD+P  ++NT+++A+RC+ I+ +    LP F   E D I   
Sbjct: 224  DYSPEQYLKTQDKMTALFSDMPAVIDNTLDLAKRCNVIIHMGHHDLPEFPIPEGDTI--- 280

Query: 307  EENELRNKAVAGLEVRLAQ-GAIAK-----GYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             E   R  A  GLE RL +   I K         + Y +RL+FEL  I  M F GYFLIV
Sbjct: 281  -ETFFRRTAQEGLEKRLEKLYPIEKRDDSWAEKRKPYDERLEFELTTILNMGFPGYFLIV 339

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI+W+K N++PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD+
Sbjct: 340  MDFIRWSKANDVPVGPGRGSGAGSLVAYSLNITDLDPLEYDLLFERFLNPERVSMPDFDV 399

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RD VI YV  KYG E V+QIITFG++ AKA +RDV R     Y   D++ KLIP
Sbjct: 400  DFCIEGRDRVIDYVAQKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKISKLIP 459

Query: 481  NDPAHPVSL-QAIADDSRFREARLADP------SVDRLLEISQKLEGLYRHASTHAAGIV 533
              P   +SL  A+  + + ++  L +P        + + E++ +LEG+ R    HA G++
Sbjct: 460  KTPG--ISLADAVEAEPQLKDL-LNNPDNMDYEDANEIWEMAVRLEGITRGVGKHAGGVL 516

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            I    ++    +Y D     PV+QF+   +E  GL+KFDFLGL+ LT++  ++  +  R 
Sbjct: 517  IAPTKITDYSAIYCDEEGH-PVSQFDKDDVEAVGLVKFDFLGLRNLTVINAAVKNINARR 575

Query: 594  VK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             K     +DL  +P DD  TY LL    T  +FQLES+GM++ L  ++P  IED+IA+ +
Sbjct: 576  AKEQQPPLDLETLPLDDKPTYSLLQDAHTTAVFQLESTGMKKYLAKLKPTNIEDVIAMCA 635

Query: 649  LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            LYRPGP+D  +V  Y +RK+G+E+++  H  ++P+L+ T GVI+YQEQVMQI+Q ++GYS
Sbjct: 636  LYRPGPLDAGMVDMYIDRKHGREEVIYDHDRLEPILENTYGVIVYQEQVMQISQAMAGYS 695

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F+ GA   GI   +A  +F+L+ KFA YGFNKSH+
Sbjct: 696  LGGADMLRRAMGKKKPEEMAKQRSIFVEGAIGQGIDDKLAGGVFDLMEKFAGYGFNKSHS 755

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPC 825
            AAY V++YQTA++K +YP EF+AA +T +M+N + +  F  D R+ F +++  PSVN   
Sbjct: 756  AAYGVLAYQTAYLKHYYPAEFMAAVITSDMNNTDGVVFFINDCRENFGLKVENPSVNHSN 815

Query: 826  VDF-KVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLE 883
              F  +    I Y L  IKGVG      I+EA +A   F  L DFC RVD++K+N+R LE
Sbjct: 816  WAFVPINPTTIVYGLGGIKGVGEGAVESIVEARNAGGEFTDLYDFCRRVDTRKVNKRTLE 875

Query: 884  SLVFAGALDCFG-------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +LV AG  D F              + R  LL  L    K  Q  E+ R+N    +    
Sbjct: 876  ALVKAGCFDSFAPKLRPDLPADEAYHIRGALLAEL---PKAVQAAEQQRSNDSLGMI--- 929

Query: 931  KGTFSD--KIT----LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
               FSD  ++T    L +  V   + R + E+  LG Y +GHP+D Y+  L++   K   
Sbjct: 930  -DLFSDIQEVTAPPPLPREPVWTDAERLKGEKDTLGLYLTGHPIDSYRDELKRYTPKTLG 988

Query: 985  ESVATIRGNNIRLAAMVV 1002
            +   T  G  +  A +++
Sbjct: 989  DLSETSYGETVFFAGLIL 1006


>gi|269792442|ref|YP_003317346.1| DNA polymerase III, alpha subunit [Thermanaerovibrio acidaminovorans
            DSM 6589]
 gi|269100077|gb|ACZ19064.1| DNA polymerase III, alpha subunit [Thermanaerovibrio acidaminovorans
            DSM 6589]
          Length = 1132

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/1043 (38%), Positives = 622/1043 (59%), Gaps = 48/1043 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VHS YSLL+GA+    ++D +A+    A+AITD   ++   EF +K  A GI
Sbjct: 2    SVEFVHLHVHSEYSLLDGAIRCGELVDTVASMGMGAVAITDHGVMYGCEEFYEKCVAKGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC++ +D         +G+        +VL      GY+ LI+LVS +   D    
Sbjct: 62   KPIIGCEVYVDPNGMDSRDGKGRNN-----HLVLWAEDQVGYKNLIKLVS-IANTDGFYY 115

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNL 186
              R+    L +  ++G+I  +   +G I +         A  R   ++ +FG+   ++ +
Sbjct: 116  KPRVDHRVLSQ-HSKGIIASSACLAGEIPQLLMDGDFDGAVSRANLYRDIFGEGNFFIEI 174

Query: 187  QRHRGYDRYRE-----SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
                 Y++  E     +++++LA    LPL+ATN++ +L  ED   HDVL+ V  ++ V 
Sbjct: 175  M----YNQLPEQAMANAELIRLAKRCSLPLIATNDAHYLRREDASWHDVLLCVQTNSTVD 230

Query: 242  QKDRPRV-TPDHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
              DR R  + D YL+   EM S+   ++PEAL NT+ +A RC+  LQ+   +LP F   E
Sbjct: 231  TPDRYRFGSDDFYLRTPEEMWSLLGGEVPEALRNTLLVAERCNVELQLGHYMLPEFPLPE 290

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             + +    ++ L   A  GL  R+ +         Q+YR RL++EL VI +M F GYF I
Sbjct: 291  GETL----DSHLEKMAREGLRARVGEPI------PQEYRDRLEYELGVIKQMGFPGYFCI 340

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VAD I  AK   IP+GPGRGS AGS+ A+ L IT++DP+++ LLFERFLNP+R+SMPD D
Sbjct: 341  VADIITAAKSRGIPIGPGRGSAAGSLVAWCLGITELDPIKYKLLFERFLNPERISMPDID 400

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
             D    RRDEV+ Y+  KYG +RV+QIITF  +++KAA+RDVGRAL MPY +VDR+ KL+
Sbjct: 401  TDVSDKRRDEVLAYIVEKYGIDRVSQIITFDRMKSKAAIRDVGRALAMPYPEVDRVAKLV 460

Query: 480  PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P+      SL +A+      +E   +DP V RL++ +  +EG+ RH S HAAG+VI   P
Sbjct: 461  PDGVK---SLKEALEKSPDLKEVHSSDPKVRRLVDTASHIEGIARHCSQHAAGVVITPVP 517

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVD 597
            L ++VP+ R +  +  VTQ++M+ +E  GL+K DFLGL+TL++++ +L +  A RG+K+D
Sbjct: 518  LVEMVPV-RKIGENQVVTQYSMEPLEHLGLVKMDFLGLRTLSVIEGALRNVEANRGLKID 576

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  IP DD +T+ +L    TLG+FQLESSGM+  L  ++PDC ED+IA+++LYRPGP+ +
Sbjct: 577  LRAIPLDDPKTFDMLQRADTLGVFQLESSGMQDLLRRLRPDCFEDLIAVLALYRPGPLGS 636

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  Y  RK+G+  +   HP ++  LKET GVI+YQEQVMQ A  L+GY+L EAD+LRR
Sbjct: 637  GMVDDYIERKHGRSPVTYPHPCLEEALKETYGVILYQEQVMQCAAELAGYTLGEADLLRR 696

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  + M+KQ+ +F+ GA   G+   +A +IF  + KFA+YGFNKSH+AAYA+ISYQ
Sbjct: 697  AMGKKKADVMEKQRSKFVEGAKARGVEPKMAEDIFNSIEKFAEYGFNKSHSAAYALISYQ 756

Query: 776  TAWMKTHYPVEFLAASM-TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            TA++K HY  EFLA+ + ++    ++ + ++ ++ R     ++PP +N    DF      
Sbjct: 757  TAYLKAHYGPEFLASYLSSIVGSRMDILGRYIKEVRNLGYSVLPPDINESQSDFVAVGEV 816

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I   L+A+  VG +    I+ A ++ PF S  DF  RVD + +NR V+E+L+ AGA D  
Sbjct: 817  IRLGLSAVAKVGDSAVDAILRARSEGPFRSFWDFLCRVDLRTVNRGVIENLIKAGAFDVL 876

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RF 952
              +R  LL +L+ + + AQ   +   +K  ++F    G   ++   +   V++  +  R 
Sbjct: 877  CPNRRMLLDNLEGLLEMAQ--RRCDPSKQVSLF---DGDEEEEEEPKMDVVDDVDIHQRL 931

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR--LAAMVVSKQQKKTR 1010
            E E+ VLG Y SGHP +  +  L    +    + + + R +N+    A ++   +++ T+
Sbjct: 932  EWEREVLGLYISGHPFEQVEGELAPFLVCKISD-LRSWRSSNVAPVTAGLLAGIRERYTK 990

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
            +G  +G +   +   + EA  FP
Sbjct: 991  RGDPMGILEMEDGDDKVEAVCFP 1013


>gi|187931355|ref|YP_001891339.1| DNA polymerase III subunit alpha [Francisella tularensis subsp.
            mediasiatica FSC147]
 gi|187712264|gb|ACD30561.1| DNA polymerase III subunit alpha [Francisella tularensis subsp.
            mediasiatica FSC147]
          Length = 1159

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/1022 (39%), Positives = 603/1022 (59%), Gaps = 41/1022 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRI 131
             +L +D            T F  +  +VLL    +GYQ ++ LVS+ Y   D+      I
Sbjct: 64   VELKVD------------TEF-GICDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              SWL E+  E +I L GG  G + +A        A++ +    ++FG   Y+       
Sbjct: 111  PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170

Query: 192  YDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247
            Y+    Y E + ++ A  + L  VATN ++F+  +DY+ H++   +   +T++ +  + +
Sbjct: 171  YENEGLYNE-KALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP  +       +KE 
Sbjct: 230  FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPT-VNIPAGLTEKEY 288

Query: 308  ENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             ++L      GL+ RL +      A    +  + Y+ RL  E+++I  M F GYFLIV D
Sbjct: 289  FSKL---CYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+K+N+I VGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 346  FIRWSKENDISVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  
Sbjct: 406  CIQSRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P      + + +     E   AD  V  ++E +QKLEGL R    HAAGIVI    +S  
Sbjct: 466  PGTTFK-KILHEGEPLYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK---VDL 598
             P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  + A+R      +D+
Sbjct: 525  APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI
Sbjct: 585  ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMG
Sbjct: 645  PTFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KK  EEM+KQ++ F  GA+K + I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTA
Sbjct: 705  KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIY 836
            W+K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I 
Sbjct: 765  WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTIL 824

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L AIKG+G    + I+ E      F S+ D C RVD +K+N++ LE+L +AGA+    
Sbjct: 825  LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR--F 952
             +R     S++   K A +V +      +++F   +        LE+   VE  +++   
Sbjct: 885  KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQKKTR 1010
             NE++ LG YFSGH +D        +     E+     + GN++R +A+M+    ++KT+
Sbjct: 945  INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004

Query: 1011 KG 1012
             G
Sbjct: 1005 TG 1006


>gi|329908024|ref|ZP_08274797.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
            IMCC9480]
 gi|327546808|gb|EGF31739.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
            IMCC9480]
          Length = 1177

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1025 (40%), Positives = 615/1025 (60%), Gaps = 36/1025 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SP F HL++HS YS+++G + +++++D  AAD QP++AITD  NLF  ++F + A   GI
Sbjct: 30   SPQFTHLRLHSEYSIVDGLIRIDDVVDAAAADSQPSLAITDLANLFGMVKFYKAARKKGI 89

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC        ++ +TN      P+   ++LL   A GY +L EL+S+ +L +  + 
Sbjct: 90   KPIIGC--------DVWITNDDDRDKPS--RLLLLAKNAAGYLQLCELISQAWLSNLHRG 139

Query: 128  SVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               I   WL+++    GLI L G   G +  A    +   AE+    + ++F    Y+ +
Sbjct: 140  RAEIRTEWLEKLSPANGLIALAGAHFGDVGIAIENGNLPAAERNAQRWSRIFPGHFYIEI 199

Query: 187  QRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR    ++  +  Q+V LA   +LP+VAT+   FL++E++ AH+    ++   +++   R
Sbjct: 200  QRAGQPNQEAQVRQLVALAARLQLPVVATHPIQFLTKEEFIAHEARTCISEGEMLANSRR 259

Query: 246  PRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R   D      ++EM  +F+DLP AL+N+ EIA+RC+  LQ+  P LP F   E   I 
Sbjct: 260  VRRFNDRQCFTTQAEMAGLFADLPAALQNSNEIAKRCNLTLQLGKPRLPDFPTPEGMTIG 319

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                + L  +A +GLE RL Q       +    Q Y  RLDFE N I +M F GYFLIVA
Sbjct: 320  ----DFLVAEARSGLERRLLQLYPDETKREAERQRYADRLDFETNTIIKMGFPGYFLIVA 375

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQWAK N +PVGPGRGSGAGS+ AY+L+ITD+DPL ++LLFERFLNP+R+SMPDFDID
Sbjct: 376  DFIQWAKNNGVPVGPGRGSGAGSLVAYSLSITDLDPLEYNLLFERFLNPERVSMPDFDID 435

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ+ RD VI+YV+++YG E V+QI TFG++ AK A+RDVGR L M Y+  D + KLIP 
Sbjct: 436  FCQEGRDRVIQYVKDRYGKEAVSQIATFGTMAAKGAIRDVGRVLDMGYNFCDGISKLIPF 495

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  AI ++    E +  +  V +LL+++Q++EG+ R+   HA G+VI    L+
Sbjct: 496  KPGKQVTIADAILEEPLLAERQENEDEVRQLLDLAQQVEGIARNIGMHAGGVVIAPGKLT 555

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  ++ ++ +      D S
Sbjct: 556  DFCPLYTQGGDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAVRYIKRLDPAMADFS 615

Query: 600  L--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  +P +D  +Y LLT   T+ +FQLES GM+  L+  +PD  EDIIALV+LYRPGP+D 
Sbjct: 616  LEKLPLNDKASYDLLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDL 675

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G E+     P  + +L ET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 676  IPDFCRRKHG-ERFDYPDPRTEGILSETYGIMVYQEQVMQMAQVVGGYSLGGADLLRRAM 734

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM + ++ F  GA+K+G+S+  A  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 735  GKKKAEEMAEHRQIFRDGAAKDGLSEAKADEIFDLMEKFAGYGFNKSHAAAYALLAYHTA 794

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVN------TPCVDFKV 830
            ++K H+P  F+AA+++L MD+ EKI+   +D      + ++PP +N      TP  +   
Sbjct: 795  YLKAHHPAAFMAANLSLAMDDTEKIRILVEDVIDVCAMTLLPPDINQSDYRFTPVGEPGK 854

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               +I Y L A+KG G      I+ A A  PF  L DF  RVD +++NRR ++SL+ AGA
Sbjct: 855  RAKQIRYGLGAVKGSGQGAIEAIVAARASGPFTDLFDFAKRVDKRQVNRRTVDSLIRAGA 914

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             DCF   R  LL S+    + A+  E   +    ++F  +      +    K +      
Sbjct: 915  FDCFEVDRAVLLASVALALEAAEQHEA--SINQVSLFGGDDSDLDTQPEYLKVAPWTDKQ 972

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R   E+  LGFY SGH  + Y   +R+   +    S+   R   + +A ++VS + + T+
Sbjct: 973  RLTEEKTALGFYLSGHLFNSYAEEVRRFA-RTKLSSLEPSRDPRM-IAGIIVSLRVQMTQ 1030

Query: 1011 KGSRI 1015
            +G  +
Sbjct: 1031 RGKMV 1035


>gi|121634255|ref|YP_974500.1| DNA polymerase III, alpha subunit [Neisseria meningitidis FAM18]
 gi|120865961|emb|CAM09698.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis
            FAM18]
 gi|325197670|gb|ADY93126.1| DNA polymerase III, alpha subunit [Neisseria meningitidis G2136]
          Length = 1144

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/1046 (38%), Positives = 598/1046 (57%), Gaps = 64/1046 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            P+    + I   D          PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PVGAADVWIGNPD------APDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q    +   A+   +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DYLIKLSNE-------GLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KL
Sbjct: 407  DVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   P+ L  A+  + + +E   A+   D L+ +++KLE L R    HA G++I   
Sbjct: 467  IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K  
Sbjct: 526  KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYR
Sbjct: 581  TGDIIDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+DNI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD
Sbjct: 641  PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+
Sbjct: 700  LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F   
Sbjct: 760  ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             N +I Y+L AIKG G      I  A  +   F  L DFC RV  + +NRR LE+L+  G
Sbjct: 820  PNMKIRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943
            A D    +R  LL ++D           N   K  N  A++ G F       + + L   
Sbjct: 880  AFDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDA 930

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVV 1002
             + + S +   E+ V+GFY SGHP   Y   +R++      + ++ ++  +++RLA  V 
Sbjct: 931  PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKLSKLKPQDSVRLAGFVT 986

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            + +    ++G +I +V+  + + + E
Sbjct: 987  AVRTMMGKRG-KIAFVSLEDLSGQVE 1011


>gi|50085210|ref|YP_046720.1| DNA polymerase III alpha [Acinetobacter sp. ADP1]
 gi|49531186|emb|CAG68898.1| DNA polymerase III, alpha chain [Acinetobacter sp. ADP1]
          Length = 1187

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/1014 (38%), Positives = 594/1014 (58%), Gaps = 50/1014 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++     D  PA+A+TD +NL +A++F       GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRIPDLIKAAVQDDMPALALTDLSNLHAAVKFYTSCLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + ++  ++                I LL  T +G++ L E+VSR ++  +G+Q   
Sbjct: 63   LGSVVRLNDPEH---------------RITLLAMTNDGWKGLTEIVSRGHI--EGQQLSI 105

Query: 131  ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             C+   W+ E   + +++L  G    + +    ++ Q AE  L  +++ FG+R+Y+ L R
Sbjct: 106  PCVQKEWILEQHQDIIVLL--GQHSDVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIALTR 163

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +     + V+LA  + + +VA N+  F+  +D++AH+  + +A   V++   RPR
Sbjct: 164  TQRAGEEDYMVEAVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHRRPR 223

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-------IEKE 299
            + + + Y K  SEM  +FSD+P A+ENT  IA+RC+  LQ+    LP +       I+  
Sbjct: 224  IYSSEQYFKTASEMEELFSDIPSAIENTYYIAQRCNVSLQLGTYFLPDYPIPDGFTIDTY 283

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             + + KE   E  N  +  +E R       +    + Y +R+++E+ +I +M F GYFLI
Sbjct: 284  FEHLSKEGLEERLNH-LYPIETRDQDWPEIR----KPYDERIEYEVGIILKMGFPGYFLI 338

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD
Sbjct: 339  VMDFIQWAKSNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFD 398

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++
Sbjct: 399  VDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMV 458

Query: 480  PNDPAHPVSLQAIADDSRFRE--ARLADPSVD---RLLEISQKLEGLYRHASTHAAGIVI 534
            P  P      QAI  + + ++     ++P  D    + E++ KLEG+ R+   HA G+VI
Sbjct: 459  PTKPLGVDLKQAIEMEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVI 518

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-- 592
                ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +R  
Sbjct: 519  APGKITDYSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIQ 578

Query: 593  -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
              + +D++ +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYR
Sbjct: 579  SEIPLDIANVPLDDKDAYLVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYR 638

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+D I  + +R +G E    +HPL++ +L+ T G+++YQEQVMQ AQ  +GY+L  AD
Sbjct: 639  PGPMDLIPDFIHRMHGGE-FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGAD 697

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ++ FI GA++  I +  A +IF+ + KFA YGFNKSHAAAYA+
Sbjct: 698  LLRRAMGKKKPEEMVKQRQIFIKGAAEKEIDEATANHIFDYMEKFAGYGFNKSHAAAYAL 757

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++Y TAW+K HYP EF+AA ++ EM N + I     D R   ++++PPSVN     F   
Sbjct: 758  VAYHTAWLKAHYPAEFMAAVLSSEMQNTDSIVFLIDDCRNNALEVLPPSVNMSLYHFHAS 817

Query: 832  DNR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D R I Y L AIKGVG    + ++++   + P+  L DFC R+D KK+N+R LE+L+ AG
Sbjct: 818  DERTIVYGLGAIKGVGEQAMQSVIDSRIKNGPYTDLFDFCHRIDLKKINKRTLEALIRAG 877

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENS 948
            ALDC    R  L+  L    + A+   +NR     ++F   E+        ++ +S E  
Sbjct: 878  ALDCLQIERSSLMAQLPEAVQAAEQARQNRETGIMDLFGEVEEVQRKPAKPVKPWSDE-- 935

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             VR + E+  LG Y +GHP+DVY+P L+        E   T RG     A +V+
Sbjct: 936  -VRLKGEKDTLGLYLTGHPIDVYRPELKSFIPAKLNEVTPTRRGVTTVFAGLVL 988


>gi|255065760|ref|ZP_05317615.1| DNA polymerase III, alpha subunit [Neisseria sicca ATCC 29256]
 gi|255050078|gb|EET45542.1| DNA polymerase III, alpha subunit [Neisseria sicca ATCC 29256]
          Length = 1144

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/1049 (38%), Positives = 597/1049 (56%), Gaps = 70/1049 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            P+    + I         N    PF      +L++    GY RL EL++  Y+  ++   
Sbjct: 64   PVGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKERNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q       +     +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DYLVKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P++  D+L KL
Sbjct: 407  DVDFCQSNRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKL 466

Query: 479  IPNDPAHPVSLQAIADDSRFREARLAD----PSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP +   P+ L    DD+   E ++ +       D L+ +++KLE L R    HA G++I
Sbjct: 467  IPLEANKPLGL----DDAMKAEPQIQELIEVEEADELITLAKKLEDLTRGLGMHAGGVLI 522

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
                +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +
Sbjct: 523  APGKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNI 577

Query: 595  K------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            K      VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VS
Sbjct: 578  KNTTGDIVDVGKIPLDDQAAYKIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVS 637

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+DNI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL 
Sbjct: 638  LYRPGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLG 696

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAA
Sbjct: 697  GADLLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAA 756

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+ISYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F
Sbjct: 757  YALISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRF 816

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                N +I Y+L AIKG G      I+ A  +   F  L DFC RV  + +NRR LE+L+
Sbjct: 817  TPYPNMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALI 876

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITL 940
              GA D    +R  LL ++D           N   K  N  A++ G F       + + L
Sbjct: 877  RGGAFDSIEPNRAMLLANID-------LAMNNADQKAAN--ANQGGLFDMMEDAIEPVQL 927

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAA 999
                + + S +   E+ V+GFY SGHP   Y   +R++        +  ++  +++RLA 
Sbjct: 928  IDAPMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAG 983

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             V + +    ++G +I +V+  + + + E
Sbjct: 984  FVTAVRTMMGKRG-KIAFVSLEDLSGQIE 1011


>gi|225076963|ref|ZP_03720162.1| hypothetical protein NEIFLAOT_02015 [Neisseria flavescens
            NRL30031/H210]
 gi|224951716|gb|EEG32925.1| hypothetical protein NEIFLAOT_02015 [Neisseria flavescens
            NRL30031/H210]
          Length = 1144

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/1041 (38%), Positives = 591/1041 (56%), Gaps = 54/1041 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKTCRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            P   TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PCDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q       +     +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DYLIKLSNE-------GLQERMVQLYPDEAERAVKMPEYQKRLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KL
Sbjct: 407  DVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   P+ L  A+  + + +E   A+   D L+ +++KLE L R    HA G++I   
Sbjct: 467  IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596
             +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + D +    G  +
Sbjct: 526  KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKNTTGDII 585

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+D
Sbjct: 586  DVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMD 645

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            NI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRA
Sbjct: 646  NIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRA 704

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQT
Sbjct: 705  MGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQT 764

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RI 835
            AW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +I
Sbjct: 765  AWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYCFTPYPNMKI 824

Query: 836  YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y+L AIKG G      I  A  +   F  L DFC RV  + +NRR LE+L+  GA D  
Sbjct: 825  RYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSI 884

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFSVENS 948
              +R  LL ++D           N   K  N  A++ G F       + + L    + + 
Sbjct: 885  EPNRAMLLANID-------LAMNNADQKAAN--ANQGGLFDMMEDAIEPVRLVDTPMWSE 935

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQK 1007
            S +   E+ V+GFY SGHP   Y   +R++        +  ++  +++RLA  V + +  
Sbjct: 936  SEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVTAVRTM 991

Query: 1008 KTRKGSRIGWVTFSEPAKEYE 1028
              ++G +I +V+  + + + E
Sbjct: 992  MGKRG-KIAFVSLEDLSGQIE 1011


>gi|317132302|ref|YP_004091616.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense YUAN-3]
 gi|315470281|gb|ADU26885.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense YUAN-3]
          Length = 1174

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/1051 (38%), Positives = 604/1051 (57%), Gaps = 49/1051 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +HS YSLL+GA  + +I  +     Q A AITD   ++  ++F + A  AG++P
Sbjct: 3    GFVHLHLHSEYSLLDGACRIGDIPARAKELGQAAAAITDHGVMYGVMDFYKAARKAGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IIGC++    +     T   K   P      +VLL    +GY+ LI LVS+ ++ D    
Sbjct: 63   IIGCEVYTAAR-----TRHDKQYHPDASHGHLVLLCENMQGYRNLIRLVSQAFI-DGFYG 116

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              R+    L +   EGLI L+   SG + +     +   A  ++  +  LFG D  Y+ L
Sbjct: 117  KPRVDWDLLTQY-HEGLIALSACLSGEVPKLLLAGNEAGARAKVEAYAALFGEDHFYLEL 175

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++ R  + ++++A    LPLVATN++ +L +ED     +L+ +  +  V +   
Sbjct: 176  QDHGMPEQQRVNAGLLEIARVSGLPLVATNDAHYLRKEDAYLQKMLLCIQTNRTVDEPGV 235

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               T + Y+K+  EM ++F  +PEA +NTV IA+RC+        ILP F   E    Q 
Sbjct: 236  GFPTDEFYMKSEEEMRALFPQVPEACDNTVAIAKRCNVEFTFGKTILPHF---EVPGGQ- 291

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADFI 364
            E    LR  A  GL  R        G    D  ++RLD+EL+VI RM +  Y+LIV DFI
Sbjct: 292  EHGAYLRGMAERGLADRY-------GPQPDDTVKERLDYELDVITRMGYVDYYLIVHDFI 344

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            + AK+  IPVGPGRGSGAGS+ AY + IT IDP+R+ LLFERFLNP+R+SMPDFDIDFC 
Sbjct: 345  RHAKEAGIPVGPGRGSGAGSLVAYCVGITGIDPMRYHLLFERFLNPERISMPDFDIDFCY 404

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YV  KYG + VAQIITFG++ A+AA+RDVGRA+ +PY++VDR  K++P +  
Sbjct: 405  ERRQEVIDYVVRKYGSDHVAQIITFGTMAARAAIRDVGRAMGVPYAEVDRTAKMVPAELG 464

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              ++ +A+      R    AD +V RLL+ ++ LEG+ RHASTHAAG+VI   P+   VP
Sbjct: 465  MTIA-KALEHSEDLRTRYDADETVRRLLDTAKGLEGMPRHASTHAAGVVITRDPVDSYVP 523

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IP 602
            + ++  S   VTQF M  +E+ GL+K DFLGL+TLT+++ + + + ++ V  D S+  I 
Sbjct: 524  LQKNDES--IVTQFTMTTLEELGLLKMDFLGLRTLTVIRYAENRIREQYVP-DFSIEQIA 580

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +DH  Y +L +  T G+FQ ES GMR  +  + P+ +ED+IA++SL+RPGP+++I  Y 
Sbjct: 581  LNDHAVYDMLGSGNTEGVFQFESPGMRHTIMELGPEHMEDLIAVISLFRPGPMESIPRYI 640

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              ++  EK+   HPL+  +L  T G I+YQEQVM+I + L GYS   AD++RRAM KK  
Sbjct: 641  ENRHHPEKVAYRHPLLKDILDVTYGCIVYQEQVMEIVRKLGGYSYGRADLVRRAMAKKKA 700

Query: 723  EEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
              M ++++ FI             GA +NG+ ++ A  IF+ ++ FA Y FNKSHAAAYA
Sbjct: 701  AVMQQERDHFIHGLRREDGTFECVGAVRNGVDESTANAIFDEMSSFASYAFNKSHAAAYA 760

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTA++K HYP E+ AA +T  ++N  K+ ++  +  + +I I+PP VN     F V
Sbjct: 761  LVSYQTAYLKCHYPKEYFAALLTSVLENSAKVSEYINECVRLHIGILPPDVNESMNGFTV 820

Query: 831  GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              N I + L A+K +G    R ++ E + + PF S  DF  R     LNRR+LESL+  G
Sbjct: 821  SGNNIRFGLDAVKNLGRGFIRSLVRERAENGPFASFRDFVRRALPYDLNRRMLESLIKCG 880

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A D   Y R QL+   + +    +   KN  +   ++F         +  L+        
Sbjct: 881  AFDSLHYKRRQLMLGYEALLAQEETTRKNNLSGQVSLFGTPAAPTDKQENLKDAEEFAPR 940

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG------YEESVAT-IRGNNIRLAAMVV 1002
             R   E+ VLGFY +GHP++ Y+  +R++ +        +EE ++    G ++ LA +V 
Sbjct: 941  ERLAYEKEVLGFYLTGHPVERYRAAIRRLKLPSVGTILEHEEHISNDADGTSVSLAGIVQ 1000

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            SKQ K T+    + + T  + +   E   FP
Sbjct: 1001 SKQTKITKNNETMAFCTLDDGSGTIELIVFP 1031


>gi|82523671|emb|CAI78453.1| DNA polymerase III, alpha subunit [uncultured candidate division WS3
            bacterium]
          Length = 1160

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1034 (38%), Positives = 606/1034 (58%), Gaps = 49/1034 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  HS YSLL+GA  ++ ++ +    + PA+AITD  ++F A+EF  +A   GI+PI
Sbjct: 6    FVHLHNHSQYSLLDGACRIDRMVQRALEFRMPALAITDHGSMFGAIEFYSEAREHGIKPI 65

Query: 71   IGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IG +  +    +  K   +G   +     ++LL+  AEGY+ L++L S  Y+ D      
Sbjct: 66   IGMEAYVTPGSHAEKPAGKGMESYS---HLLLLIRNAEGYRNLMKLSSASYV-DGFYYKP 121

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L++ G +GL+  T    G   +     +   A + ++   ++FGD  +Y+ +  
Sbjct: 122  RVDKELLRKYG-DGLLACTACLKGEPAQHVLAGNEDAARESIIELVEIFGDGHVYLEVHN 180

Query: 189  HRGYDRYRESQVVQLAYTH-----ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            H       E  V++ AY        +PLVA N+  ++  E   AHDVL+ +     + + 
Sbjct: 181  HG----MPEEAVIRQAYVRLGRELGVPLVAANDCHYVRREQAAAHDVLLCIQTGREIDEP 236

Query: 244  DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKE 299
            +R R+  D  Y+K+  EM  +F D P A ENT+E+A +C+  L    VH P  P  I + 
Sbjct: 237  NRMRMPNDEFYMKSPEEMRELFLDCPGAYENTIEVAEKCNLQLDFDHVHMPEFP--IPQG 294

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              D     E   R     GLE R             +   R   EL++I +M F+GYFLI
Sbjct: 295  YTDAAAHLEALTRE----GLEERYET-------VTPEVEARAALELSMIGQMGFAGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI  A++  IPVGPGRGS A S+ +YAL IT++DPL F L+FERFLNP R SMPDFD
Sbjct: 344  VHDFIHEARRRGIPVGPGRGSAAASIVSYALGITELDPLEFGLVFERFLNPARKSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC +RR+E+I YV  KYG E VAQIITFG++QA+AA+RDVGR L+ PYS+VDR+ K++
Sbjct: 404  IDFCYERRNEIIEYVTEKYGRESVAQIITFGTMQARAAIRDVGRVLKFPYSEVDRVAKMV 463

Query: 480  PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P +    ++L +A+A     +  R +D    +LL+ +  LEGL RHAS HAAG++I    
Sbjct: 464  PRELN--ITLEEALAKTPELKALRDSDERYAKLLDYAGDLEGLARHASVHAAGVIIAPGR 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            +    P+YR  + ++  TQ+ M  + + GL+KFDFLGL+TLT++  +L  + + RG+ + 
Sbjct: 522  IDDWAPLYRSNKGEI-TTQYPMNSLARIGLLKFDFLGLRTLTVIHDALAMIRENRGIDLA 580

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               IP DD ETY LL T  T+GIFQ+ESSGMR  L  ++P+ +ED+ A+ +L+RPGP+ +
Sbjct: 581  PDRIPLDDPETYELLGTGHTVGIFQVESSGMRDLLRKVRPERLEDMTAVNALFRPGPLGS 640

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  Y  RK+G++K+  IHP + P+L+ET GV+ YQEQVMQI+  L+G+S+S+ADVL  
Sbjct: 641  GMVDDYVKRKHGRQKVSYIHPKLAPVLEETYGVMAYQEQVMQISSALAGFSMSQADVLLN 700

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AM KK+ E+M  Q+E F++G  +NGIS+ IAV +F+ +  F+ YGFNK H+A YAV++ +
Sbjct: 701  AMRKKVVEQMATQREDFLAGCRENGISERIAVKVFDQMEFFSGYGFNKPHSACYAVLAVR 760

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GD 832
            TA++KTH+  EF+AA++T EMDN +++     + R+  I+++PP VN   V+F+    GD
Sbjct: 761  TAYLKTHFAPEFMAATLTSEMDNSDRVVALTGECRRLGIRVLPPDVNEGHVEFRATSRGD 820

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I + L+A+K VG    R ++ A  +   F+ + D  SRVD + +NRRVLESLV AGAL
Sbjct: 821  --IQFGLSAVKNVGRAAVRSMVAARREHGSFEDVFDLTSRVDLRLVNRRVLESLVAAGAL 878

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE---NIFAHEKGTFSDKITLEKFSVENS 948
            D     R Q  +++       Q  +++R +      +I   + G+      L + +    
Sbjct: 879  DGLHGHRAQQYEAIGAALDLGQRAQRDRDSGQTSLMDILDTDAGSELRPRRLPEATPWPD 938

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             V    E+ VLG Y SGHPL  Y+  L         +    +    +RL  ++   +   
Sbjct: 939  GVALAKEKEVLGMYVSGHPLARYEKELSTFATATTMDLAEMVDDEPVRLGGIITHVKTTA 998

Query: 1009 TRKGSRIGWVTFSE 1022
             RKG ++ +VT  +
Sbjct: 999  DRKGEQMAFVTLED 1012


>gi|262372309|ref|ZP_06065588.1| DNA polymerase subunit III [Acinetobacter junii SH205]
 gi|262312334|gb|EEY93419.1| DNA polymerase subunit III [Acinetobacter junii SH205]
          Length = 1187

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/1017 (38%), Positives = 592/1017 (58%), Gaps = 56/1017 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++    A++ PA+AITD +NL +A++F       GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRIPDLVKAAVAEEMPALAITDLSNLHAAVKFYGACLGKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + ++  ++                  LL  +  G++ L E+VSR ++  +G+Q   
Sbjct: 63   MGSVIRLNDAEH---------------RATLLAMSNTGWRNLTEIVSRGFI--EGQQLSV 105

Query: 131  ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             C+   W+ E   E LI+L G  S  + +    ++ Q AE  L  +   FG+R+Y++L R
Sbjct: 106  PCVQKEWVLE-QAEDLIILLGQHSD-VGKMLCSSNPQKAEPLLEDWISKFGNRVYLSLTR 163

Query: 189  HRGYDRYRES----QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                DR  E     + V+LA  +++ +VA N+  F+ ++D+ AH+  + +A   V+    
Sbjct: 164  T---DRVGEEDFIVEAVKLAAKYQIGVVAHNDIHFIEQDDFYAHEARVCIADGYVLGDDK 220

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP+  +P+ Y K   +M  +FSD+P A+ENT +IA+RC+  LQ+    LP F   +   I
Sbjct: 221  RPKPYSPEQYFKTAEQMSELFSDIPSAIENTYQIAKRCNVALQLGTYFLPDFPIPDGYTI 280

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARMKFSGY 356
                E+  R     GLE RL           +D       Y +R+ +E+++I +M F GY
Sbjct: 281  DTYFEHLSRE----GLEERLNH-LYPIDERDEDWPDIRKPYDERIKYEVDIILKMGFPGY 335

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 336  FLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMP 395

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ 
Sbjct: 396  DFDVDFCIAGRDRVIEYVAQNYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRIS 455

Query: 477  KLIPNDPAHPVSLQAIADDSRFRE--ARLADPSVD---RLLEISQKLEGLYRHASTHAAG 531
            K++P  P      QAI  + + ++     A+P  D    + E++ KLEG+ R+   HA G
Sbjct: 456  KMVPTKPLGVDLKQAIELEPQLKDIVTNPANPDHDDAAEIWEMALKLEGITRNTGKHAGG 515

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI    ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +
Sbjct: 516  VVIAPGKITDYSAVICDPDGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINK 575

Query: 592  R---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R    V ++++ +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VS
Sbjct: 576  RIQSDVPLNIANVPLDDKDAYLVFAEANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVS 635

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  + +R +G E    +HPL++ +L+ T G+++YQEQVMQ AQ  +GY+L 
Sbjct: 636  LYRPGPMDLIPDFIHRMHGGE-FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLG 694

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ++ FI GA++  I +  A +IF+ + KFA YGFNKSHAAA
Sbjct: 695  GADLLRRAMGKKKPEEMVKQRQIFIKGAAEKDIDEATANHIFDYMEKFAGYGFNKSHAAA 754

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+++Y TAW+K HYP EF+AA M+ EM N + +     D R   ++++PPSVN     F
Sbjct: 755  YALVAYHTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNKLEVLPPSVNMSLYHF 814

Query: 829  KVGDNR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
               D R I Y L AIKGVG    + ++++   D P+  L DFC R+D KK+N+R LE+L+
Sbjct: 815  HAIDERTIVYGLGAIKGVGEQAMQSVIDSRIKDGPYKDLFDFCHRIDLKKINKRTLEALI 874

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSV 945
             AGALDC G  R  L+  L    + A+    NR     ++F   E+        ++ +S 
Sbjct: 875  RAGALDCLGIERSSLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEVQRKPAKPVKPWSD 934

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            E   VR + E+  LG Y +GHP+DVY+  L+        E   T RG     A +V+
Sbjct: 935  E---VRLKGEKDTLGLYLTGHPIDVYRSELKAFIPAKLNEVTPTRRGVTTVFAGLVL 988


>gi|86608659|ref|YP_477421.1| DNA polymerase III subunit alpha [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557201|gb|ABD02158.1| DNA polymerase III, alpha subunit [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 1165

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/1059 (37%), Positives = 626/1059 (59%), Gaps = 58/1059 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  L  +++++ A   P +A+TD   ++ ALE  +   + GI P
Sbjct: 2    SFVPLHLHSEYSLLDGASQLPRLVEQVVAMGLPGLALTDHGVMYGALELVKLCKSKGITP 61

Query: 70   IIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QG 125
            IIG ++ +   D++D  +        +P    +VL  +T +GY+ L++L +  +L   QG
Sbjct: 62   IIGNEMYVINGDIRDKSRK-------YPKYHQVVLAKNT-QGYKNLVKLTTISHLHGIQG 113

Query: 126  KQSV-RICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K    R C++  +L +   EGLI+ +G  +G + +A      ++A +    +++ FGD  
Sbjct: 114  KGIFSRPCINKEYLVQY-KEGLIVTSGCLAGEVPQAILQRRPEIAREVAAWYQEQFGDDY 172

Query: 183  YVNLQRHRGY--DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            Y+ +Q H GY  DR+   Q+V++A    +P++ TN+S F+S  D EAHD L+ +     +
Sbjct: 173  YIEIQDH-GYQEDRFVNVQLVRIARELGIPIILTNDSHFISCWDVEAHDALLCIQTGKSL 231

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCS---FILQVHAPI 291
            ++K+R R T   YLK+  EM  +  D      + EA+ NT+++  +        ++  P 
Sbjct: 232  TEKNRLRYTGTEYLKSPEEMRRLCRDHLEQEVIDEAIANTLKVLEKIEGYDLFGEMRMPD 291

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             P       D       + L   A  GL  R   G        Q+Y++RL FELN+I + 
Sbjct: 292  YPVPPGHSAD-------SYLTELAWQGLAKRC--GVAQPDQIPQNYQERLRFELNIIQQK 342

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             FS YFL+V D++++A++  IPVGPGRGS AGS+ AYAL IT+IDP+++ LLFERFLNP+
Sbjct: 343  GFSSYFLVVWDYVRYAREQGIPVGPGRGSAAGSLVAYALQITNIDPVKYGLLFERFLNPE 402

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R SMPD D DFC +RR E+I YV  KYG ERVAQIITF  + +KA L+DVGR L +PYS+
Sbjct: 403  RQSMPDIDTDFCIERRGELIDYVTRKYGQERVAQIITFNRMTSKAILKDVGRVLDIPYSE 462

Query: 472  VDRLCKLIPNDPAHPVSL-QAIADDS---RFREARLADPSVDRLLEISQKLEGLYRHAST 527
             D++ KLIP     P  L + I +D+    F+E    DP+  R +E+++ LEG  +    
Sbjct: 463  ADKMAKLIPVSRGKPAKLEEMIGEDTPAPEFKEKYEKDPTTHRWIELARLLEGTNKTFGV 522

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HAAG+VI   PL ++VP+  +    + +TQ++M+ IE  GL+K DFLGL+ LT++Q++++
Sbjct: 523  HAAGVVIAKDPLDEIVPLQYNNEGQI-ITQYSMEDIESLGLLKMDFLGLRNLTMIQRAVE 581

Query: 588  FLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             + +  GV +DL  +P DD +TY LL      GIFQLESSGM+Q +  ++P  +EDI ++
Sbjct: 582  LIREHNGVNIDLDNLPLDDKKTYQLLEKGELEGIFQLESSGMKQVVRELKPSNLEDISSV 641

Query: 647  VSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ++LYRPGP+D  ++  + +RK+G++ +   H L+ P+L++T G I+YQEQ+M+IAQ ++G
Sbjct: 642  LALYRPGPLDTGMIPDFIDRKHGRKPVTYAHELLKPILQDTYGAILYQEQIMRIAQDMAG 701

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            Y+L +AD+LRRAMGKK   EM+K +E+F+ GA+K G+S+ +A  +F+ +  FA+Y FNKS
Sbjct: 702  YTLGQADLLRRAMGKKKVSEMEKHREQFVQGAAKRGVSQEVATELFDQMVAFAEYCFNKS 761

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+ AY +I++QTA++K +YP E++AA ++    + +K++++        IQI PP +N  
Sbjct: 762  HSTAYGLITFQTAYLKANYPTEYMAALLSSVGGDQDKVQRYITYCLSIGIQIQPPDINRS 821

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLE 883
             +DF    + I + L A+K VG    ++I+ A  AD PF SL DFC RVD + +NRR LE
Sbjct: 822  GMDFTPQGSSILFGLGAVKNVGEGAIQNILAARQADGPFTSLADFCQRVDLRIVNRRALE 881

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKI--- 938
            +L+ AGA DC   +R QL+  LD I  +A    K++     ++F      G+  +     
Sbjct: 882  ALICAGAFDCISGNRKQLIADLDPILSWAAQRAKSKAIGQASLFDLLGSSGSAGNGFVEA 941

Query: 939  ----TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
                  E F  +   +R E E  +LGFY S HPL   +   R +      +        +
Sbjct: 942  PRGPVTEDFPPQE-KLRLERE--LLGFYVSDHPLRRIQEQARLLAPVNLADLGGCAADAS 998

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + + A+V + +   T+KG R+  +   +     EA  FP
Sbjct: 999  VGVLALVTAIKNVTTKKGDRMAILQLEDLTGSCEAVIFP 1037


>gi|325131475|gb|EGC54182.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M6190]
 gi|325137580|gb|EGC60161.1| DNA polymerase III, alpha subunit [Neisseria meningitidis ES14902]
          Length = 1144

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/1046 (38%), Positives = 597/1046 (57%), Gaps = 64/1046 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            P+    + I   D          PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PVGAADVWIGNPD------APDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+L     LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLVEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q    +   A+   +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DYLIKLSNE-------GLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KL
Sbjct: 407  DVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   P+ L  A+  + + +E   A+   D L+ +++KLE L R    HA G++I   
Sbjct: 467  IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K  
Sbjct: 526  KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580

Query: 596  ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYR
Sbjct: 581  TGDIIDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+DNI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD
Sbjct: 641  PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+
Sbjct: 700  LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F   
Sbjct: 760  ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             N +I Y+L AIKG G      I  A  +   F  L DFC RV  + +NRR LE+L+  G
Sbjct: 820  PNMKIRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943
            A D    +R  LL ++D           N   K  N  A++ G F       + + L   
Sbjct: 880  AFDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDA 930

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVV 1002
             + + S +   E+ V+GFY SGHP   Y   +R++      + ++ ++  +++RLA  V 
Sbjct: 931  PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKLSKLKPQDSVRLAGFVT 986

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            + +    ++G +I +V+  + + + E
Sbjct: 987  AVRTMMGKRG-KIAFVSLEDLSGQVE 1011


>gi|89255882|ref|YP_513244.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            holarctica LVS]
 gi|115314369|ref|YP_763092.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            holarctica OSU18]
 gi|156501865|ref|YP_001427930.1| DNA polymerase III subunit alpha [Francisella tularensis subsp.
            holarctica FTNF002-00]
 gi|167009646|ref|ZP_02274577.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            holarctica FSC200]
 gi|290953372|ref|ZP_06557993.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            holarctica URFT1]
 gi|295313376|ref|ZP_06803984.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            holarctica URFT1]
 gi|89143713|emb|CAJ78912.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            holarctica LVS]
 gi|115129268|gb|ABI82455.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica
            OSU18]
 gi|156252468|gb|ABU60974.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            holarctica FTNF002-00]
          Length = 1159

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/1022 (39%), Positives = 603/1022 (59%), Gaps = 41/1022 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRI 131
             +L +D            T F  +  +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVD------------TEF-GICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               WL E+  E +I L GG  G + +A        A++ +    ++FG   Y+       
Sbjct: 111  PKFWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170

Query: 192  YDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247
            Y+    Y E + ++ A  + L  VATN ++F+  +DY+ H++   +   +T++ +  + +
Sbjct: 171  YENEGLYNE-KALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP  +       +KE 
Sbjct: 230  FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPT-VNIPAGLTEKEY 288

Query: 308  ENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             ++L      GL+ RL +      A    +  + Y+ RL  E+++I  M F GYFLIV D
Sbjct: 289  FSKL---CYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 346  FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  
Sbjct: 406  CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P      + + +     E   AD  V  ++E +QKLEGL R    HAAGIVI    +S  
Sbjct: 466  PGTTFK-KILHEGEPLYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK---VDL 598
             P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  + A+R      +D+
Sbjct: 525  APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI
Sbjct: 585  ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMG
Sbjct: 645  PTFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KK  EEM+KQ++ F  GA+K + I   +   IF+ +  FA YGFNKSHAAAYA+I+YQTA
Sbjct: 705  KKKPEEMEKQRKIFKEGAAKHHNIDTKLVDEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIY 836
            W+K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I 
Sbjct: 765  WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTIL 824

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L AIKG+G    + I+ E      F S+ D C RVD +K+N++ LE+L +AGA+    
Sbjct: 825  LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR--F 952
             +R     S++   K A +V +      +++F   +        LE+   VE  +++   
Sbjct: 885  KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQKKTR 1010
             NE++ LG YFSGH +D        +     E+     + GN++R +A+M+    ++KT+
Sbjct: 945  INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004

Query: 1011 KG 1012
             G
Sbjct: 1005 TG 1006


>gi|27904720|ref|NP_777846.1| DNA polymerase III alpha subunit [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46395824|sp|Q89AN8|DPO3A_BUCBP RecName: Full=DNA polymerase III subunit alpha
 gi|27904117|gb|AAO26951.1| DNA polymerase III alpha subunit [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 1077

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/981 (39%), Positives = 576/981 (58%), Gaps = 36/981 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL+VHS +S+++G +  N +         PAIAITD++NL   ++F +   + GI+PI
Sbjct: 6   FVHLRVHSDFSMIDGLVKPNILAQHAKKLNMPAIAITDSSNLHGMIKFYRATFSQGIKPI 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQSV 129
           IG    +   D    +N           I LL     GY+ L+ L+SR Y +    K  V
Sbjct: 66  IGVDFKVFPDDKYVSSNM-------FTKITLLAVNNSGYRNLLLLLSRAYKIGYNNKVGV 118

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
            I   WL E   +G+I+L+GG  G I      N+  +    L  + + F +  Y+ + R 
Sbjct: 119 FITKEWLVE-HRKGIILLSGGCYGDIGVNLLNNNKSLVLNCLSFYNRFFENFYYLEIMRI 177

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPR 247
            R  +    S++  ++    +P+VATN   FL+++D+E H + + +    T+ S      
Sbjct: 178 GRSNEEQYISRIKDISAREGIPVVATNEVCFLNKQDFEVHKIRVFINLGCTIKSNSAHYN 237

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            TP  +++  +EM  +F D P+A+ NT+EI++RC+ IL+ +   LP+F     +      
Sbjct: 238 YTPQQFMRTSNEMEELFLDFPDAISNTIEISKRCNVILKFNKYFLPKFQTGNMN-----T 292

Query: 308 ENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + L  KA  G++ RL Q    K     +   Y  RL  ELNVI +M F GYFLIV +FI
Sbjct: 293 TDFLVMKAKKGMQKRLIQLFPNKQDRINNVNRYYTRLLSELNVINKMGFPGYFLIVMEFI 352

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            WAKKN+IPVGPGRGSGAGS+ +Y L IT++DPL F LLFERFLNP+R+ MPD D+DFC 
Sbjct: 353 NWAKKNDIPVGPGRGSGAGSLVSYVLNITELDPLSFDLLFERFLNPERVFMPDLDVDFCM 412

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           D+RD+VI +V   YG E V+QII+FG+L AK+ +RDVGR    PY  ++RL KLIP D  
Sbjct: 413 DKRDKVIEHVSKIYGEESVSQIISFGTLTAKSVIRDVGRVFGFPYGFLNRLSKLIPLDLG 472

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             +  +AI+      E    D  V  L+ I+++LEG+ R+ S HA G+VI  + ++  VP
Sbjct: 473 MTLE-KAISQKVELLELYKFDKDVRELINIAKRLEGITRNVSKHAGGVVISPKKITDFVP 531

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLS 599
           +Y D   + PVTQF+   I   GL+KFDFLGLKTLT++  ++  +  +        ++++
Sbjct: 532 LYYDENGNNPVTQFDKNDIGYTGLVKFDFLGLKTLTVIHGTVKMINTKFSNNQKKLININ 591

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            I   D   +  L T  T+ +FQLES+GM+  +  ++PD  ED++ALV+L+RPGP+ + +
Sbjct: 592 TISLKDKNCFKFLQTAQTIAVFQLESNGMKDLIRRLKPDSFEDLVALVALFRPGPLQSGM 651

Query: 660 VYN--NRKNGKEKIV-----SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           V N  NRK+GKEKI+       H L+ P+LK T G+I+YQEQVM+I Q+ + Y+L  AD+
Sbjct: 652 VDNFINRKHGKEKILYPNKECQHALLKPILKSTYGIILYQEQVMKIVQVFANYTLGHADL 711

Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           LRR M KK + EM+K +E F +GA +N I+  ++  IF LL +FA Y FNKSH+ +YA++
Sbjct: 712 LRRTMEKKDQVEMNKHREMFKNGAKENNINTKLSTKIFNLLEQFAGYAFNKSHSVSYALV 771

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
           SYQT W+K +YP EF+A++M  ++DN++KI     + +   ++I+PP+VN     FKV D
Sbjct: 772 SYQTLWLKLYYPEEFMASAMNADIDNIKKIVVLINECKVMKLKIIPPNVNQSDYYFKVDD 831

Query: 833 NR-IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
           ++ I Y L AIKG+G +    I+ A  + K F  L D C  V+SK++  +V+E L+ +G 
Sbjct: 832 DKNIIYGLGAIKGIGKSVILDIVNARKNRKRFSELFDLCVSVNSKRITHKVIEKLIMSGG 891

Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            DCFG +R  L+ S + I K A    K+   K  ++F      F+          +  S+
Sbjct: 892 CDCFGLNRSILMHSCEYIIKSANQYLKSIILKKRDLFGLLLDDFNVIKKKYYSIKKLYSM 951

Query: 951 R--FENEQRVLGFYFSGHPLD 969
           +   + E+  LG Y +GHP+D
Sbjct: 952 KQILDWEKDSLGLYLTGHPVD 972


>gi|219684390|ref|ZP_03539334.1| DNA polymerase III subunit alpha [Borrelia garinii PBr]
 gi|219672379|gb|EED29432.1| DNA polymerase III subunit alpha [Borrelia garinii PBr]
          Length = 1161

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1015 (40%), Positives = 620/1015 (61%), Gaps = 34/1015 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  AGI+PI
Sbjct: 21   FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80

Query: 71   IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IG +  +        K  + GK  +     ++LL     GY+ L++L S  YL +     
Sbjct: 81   IGIEAYMAKTSKFFKKHDDLGKMSY----HLILLAKNEIGYKNLLKLTSISYL-EGFYYR 135

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+ LQR
Sbjct: 136  PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194

Query: 189  HRGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H   D+   ++ + + Y+ EL  PL ATN+S +++ ED  A D+++ +      S ++R 
Sbjct: 195  HGIKDQNIVNERL-VEYSRELGVPLAATNDSHYVNREDAVAQDIIVCIGTGAKKSDENRL 253

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECDDI 303
            ++ T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E + +
Sbjct: 254  KMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIEFNTL 313

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +     L    + GL+ R               + R  +EL+VI RM F GYFLIV DF
Sbjct: 314  GEY----LEYLTLEGLKFRYRT-------LTSKIKDRAFYELSVIIRMGFEGYFLIVWDF 362

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDIDFC
Sbjct: 363  IKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDIDFC 422

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L KLIP+ P
Sbjct: 423  FEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKLIPDGP 482

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               VSL+ + DD+  +E   + P    L++ +  LEG+ RHASTHAAGIVI   PL+  V
Sbjct: 483  K--VSLKEVLDDNSLKEYFTSKPVYKELMDAALVLEGMNRHASTHAAGIVISKTPLTDYV 540

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--I 601
            P+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +  R V  D  +  I
Sbjct: 541  PLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIKNI 598

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P +D +T+ +L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  +
Sbjct: 599  PDNDVKTFKMLGEGKSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQF 658

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K G + I   HP +  +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK 
Sbjct: 659  IAAKKGVKSIKYPHPDLKEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKK 718

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            ++EMD+ K  F+ GA + G  K +A  IFELL  F+ YGFNKSHAAAY++I+YQTA++K 
Sbjct: 719  EDEMDEMKVDFLRGAIEKGYDKEVASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLKA 778

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L A
Sbjct: 779  NYPQYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFKEFRVTDSGISYGLNA 838

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R  
Sbjct: 839  IKNLGEIVVDLIIDEREKNGKYISFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRKT 898

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT--FSDKITLEKFSVENSSVRFENEQRV 958
            L ++LD + +     + N+     ++F   KG          + F   + S   E E+ +
Sbjct: 899  LFENLDRLIEVVSEDKNNKKLGQNSLFDVLKGQNPIQQNFNYQAFKEYSYSELLEFEKEL 958

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            LGFY SGHPLD YK  +         + +AT + + ++ + ++ S +  +T++ +
Sbjct: 959  LGFYVSGHPLDPYKKAINSFSSLNVLKDLATKKDSIVQFSGILNSVKVIQTKRNN 1013


>gi|319779485|ref|YP_004130398.1| DNA polymerase III alpha subunit [Taylorella equigenitalis MCE9]
 gi|317109509|gb|ADU92255.1| DNA polymerase III alpha subunit [Taylorella equigenitalis MCE9]
          Length = 1178

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/1003 (38%), Positives = 590/1003 (58%), Gaps = 53/1003 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL+ H+ +S+ +G + +  ++ K+ +   PAIAI+D  NLF  ++F + A   GI+PI
Sbjct: 9   FVHLRCHTEFSVFDGTIRIEELISKVQSVGMPAIAISDLANLFGFVKFYKGARKLGIKPI 68

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             C   +D Q      ++          I ++ +  +GY RL E++S+++L ++G    R
Sbjct: 69  AACDFVLDTQGVSGEAHR----------IEIIATNNKGYLRLCEIISKVWLENEGLDVAR 118

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-- 188
           +   WL +  T GLI L+GG  G I +A F N    A K L  + + F D  Y+ LQR  
Sbjct: 119 LKKEWLTD--TSGLIALSGGIYGDIGQALF-NKPIEAPKLLEDWVERFPDGFYIELQREL 175

Query: 189 ---HRGYDRYRE------SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              H  Y ++ +         VQLA    +P+VAT+   FL  + +++HDV + +A    
Sbjct: 176 PDQHGRYSKFGQLSNEYSEMAVQLAAKFGVPVVATHPIQFLESDGFDSHDVRVCIAEGEF 235

Query: 240 VSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           +S  K + R + + Y  +  +M  +F D+P A+ NT EIA+RC+  L++  P LP F   
Sbjct: 236 LSDPKRKQRFSREQYFYSPEQMCKLFEDIPSAITNTFEIAKRCNITLKLGKPQLPIFPTP 295

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
           E   + +      +      LE      AI K   A  Y+ RL+ E+ VI  M F+GYFL
Sbjct: 296 EGVSVDEYFAYLAKEGLAKRLEFLFPDEAIRK-EKAPIYQARLNKEIEVIESMGFTGYFL 354

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           IV DFI W K N +PVGPGRGSGAGS+ AY+L IT +DPL++ LLFERFLNP+R+SMPDF
Sbjct: 355 IVQDFINWGKNNGVPVGPGRGSGAGSLVAYSLGITGLDPLQYDLLFERFLNPERVSMPDF 414

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DFCQD R++VI YV +KYG + V+QI+TFG+L A+A ++DVGR +Q+PY+  D L KL
Sbjct: 415 DVDFCQDNREKVIDYVIDKYGEDSVSQIVTFGTLGARAVVKDVGRVMQVPYAVCDELSKL 474

Query: 479 IPNDPAHPVSLQ----AIADDSRFREARLADPS-VDRLLEISQKLEGLYRHASTHAAGIV 533
           IPN P  P +LQ     I D          D S +  +++ S K+EGL R+  THA G++
Sbjct: 475 IPNSPVDPYTLQRALNEIKDIQDLYNNSEGDSSDIKTVVDYSLKIEGLTRNTGTHAGGVL 534

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL---- 589
           I    L+   P++R   S   V+Q++   IE  GL+KFDFLGL+ LT+L  ++ ++    
Sbjct: 535 IAPGKLTDFTPLHRLPGSTTAVSQYDKNDIEDVGLVKFDFLGLRNLTILDWTVRYVKEFN 594

Query: 590 -AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            AQ+    DL  +P DD  TY LL+   T  +FQLES GM+  L  ++P   EDI+A+++
Sbjct: 595 EAQK--DFDLDRLPLDDKATYKLLSDGNTTAVFQLESDGMKNLLMKLKPSTFEDIVAVLA 652

Query: 649 LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
           LYRPGP+++ +V  + +RK+G+ K+   H  ++ +LK T GVI+YQEQVM I+Q++ GYS
Sbjct: 653 LYRPGPLNSGMVDDFVDRKHGRAKVDYFHKDLESVLKPTYGVIVYQEQVMLISQIIGGYS 712

Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
           L  AD+LRRAMGKK  EEM +Q+E F  GA + G    +A N+F+L+  FA YGFNKSH+
Sbjct: 713 LGGADILRRAMGKKKLEEMARQREIFQKGAMERGYDPNLATNLFDLMEMFASYGFNKSHS 772

Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AYA+I+YQTAW+K ++P EF+AA+MT +M++ +K++ F +D     ++++ P++NT   
Sbjct: 773 VAYALIAYQTAWLKAYHPAEFMAATMTSDMNDTDKVQIFWEDCIHNGLKLLAPNINTSYY 832

Query: 827 DFK-VGDNR---------IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK 875
            F+ V D +         I Y L AIKGVG      I++A  +   F SL+D   RVD  
Sbjct: 833 RFEPVKDEQSNLGLPPKTIGYGLGAIKGVGQNVVEEIVKARNEGGDFISLQDLIKRVDRT 892

Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            + +R +E+L+ +GA+D    +R  L+  +D+    A   E+++     ++FA ++G   
Sbjct: 893 IVTKRSIEALIKSGAMDVLDKNRALLMAMVDDCYIAANQAEESK--DQWDLFADDEGGAI 950

Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
           +    E           + E+  +GFYFS     V++  +RK 
Sbjct: 951 EVSVPEGIEAWTLKEVLDAERESIGFYFSNDLFGVWRSEVRKF 993


>gi|241667125|ref|ZP_04754703.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
            philomiragia ATCC 25015]
 gi|254875679|ref|ZP_05248389.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC
            25015]
 gi|254841700|gb|EET20114.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC
            25015]
          Length = 1159

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1025 (39%), Positives = 603/1025 (58%), Gaps = 43/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL++H+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A + G++PI
Sbjct: 2    FSHLRIHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALSNGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSV 129
             G +L ID            T F  V  +VLL    +GYQ ++ LVS+ Y   D+     
Sbjct: 62   FGVELKID------------TEF-GVCDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIP 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL++I    +I L GG +G + +A         E+ +     +FG   Y+     
Sbjct: 109  LIPKDWLKDINLANVICLNGGQNGELGKAILAKDDIRVEEIISENIAIFGRDNYIIEIHK 168

Query: 190  RGYDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDR 245
              Y+    Y E + ++ A  H L  VATN ++F+  +DY+ H++   +   +T++ +  +
Sbjct: 169  LEYENEGLYNE-KALEFASKHNLIAVATNLTVFMESDDYDIHEIRACINEKTTILDESRK 227

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + T + YLK+  EM   FS+LP  LENT+ IA+RC+    +  P LP       D    
Sbjct: 228  SKFTREQYLKSADEMYQTFSELPVLLENTLVIAKRCNVTFDLGKPCLPT-----VDIPDG 282

Query: 306  EEENELRNK-AVAGLEVRLAQ----GAIAKGYHA-QDYRQRLDFELNVIARMKFSGYFLI 359
              E E  +K    GL+ RLA+      + K  H  + Y+ RL  E+++I  M F GYFLI
Sbjct: 283  LTEREYFSKLCYQGLDKRLAKILENRPVDKHEHIIKVYKDRLQREIDIICDMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFD
Sbjct: 343  VEDFIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC   RD VI+YV+ KYG + V QIIT+G++ AK  +RDV R +   +   DR+ KLI
Sbjct: 403  IDFCIQGRDRVIKYVEQKYGKQSVGQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLI 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P  P      + + +     +   AD  V  ++E +QKLEGL R    HAAGIVI    +
Sbjct: 463  PETPGTTFK-KILHEGEPLYDEMQADEEVAEIVEKAQKLEGLPRSLGKHAAGIVISPTVI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRG---VK 595
            S   P+Y + +    VTQF+   +E  GL+KFDFLGLK LT+++ ++  + A+R    V 
Sbjct: 522  SDFAPVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIIKNAIASINAKRSANEVP 581

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D+S IP DD +T+ LL    T+GIFQLES GM+Q ++ +     E+IIALV+LYRPGP+
Sbjct: 582  LDISDIPLDDEKTFKLLQAGKTIGIFQLESQGMQQIVKDLGTSNFEEIIALVALYRPGPM 641

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            +NI  + +RK+G+++ + +HPL++ +L+ET G+ +YQEQVMQ+AQ L+GY+L  AD+LRR
Sbjct: 642  ENIPTFVDRKHGRKQTIYLHPLLEEVLRETYGIPVYQEQVMQMAQKLAGYTLGGADLLRR 701

Query: 716  AMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AMGKK  EEM++Q++ F  GA+K + I   +A  IF+ +  FA YGFNKSHAAAYA+I+Y
Sbjct: 702  AMGKKKPEEMEQQRKIFKEGAAKYHNIEAGLADEIFDQMEAFAGYGFNKSHAAAYALIAY 761

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDN 833
            QTAW+K HYP E++AA M+ +M N +++ KF  DA+   I ++ P+VN    D       
Sbjct: 762  QTAWLKAHYPDEYMAALMSGDMGNTDQLVKFILDAKNMGITVLAPNVNKSVYDCIAASKG 821

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I   L AIKG+G+   + I+ E      F S+ D   RVD +K+N++ LE+L FAGA+ 
Sbjct: 822  TILLGLGAIKGLGSEAIKSILNEREVGGEFSSIFDLTRRVDLRKVNKKALEALCFAGAIK 881

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR 951
                +R     S++   K A +V +       ++F   +        LE+   VE  ++R
Sbjct: 882  DISKNRATAFNSIEKAIKNAGYVNEMAAAGQNDLFGFTEQESDTDTELERECIVEEWNLR 941

Query: 952  --FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQK 1007
                NE++ LG YFSGH +D        +     E+     + GN++R +A+M+    ++
Sbjct: 942  ELLINEKKALGMYFSGHIIDGESHWRNHVSFSDLEKIQKPNMDGNSVRIIASMITPPARR 1001

Query: 1008 KTRKG 1012
            KT+ G
Sbjct: 1002 KTKTG 1006


>gi|226940314|ref|YP_002795388.1| DNA-directed DNA polymerase III, alpha subunit [Laribacter
            hongkongensis HLHK9]
 gi|226715241|gb|ACO74379.1| DNA-directed DNA polymerase III, alpha subunit [Laribacter
            hongkongensis HLHK9]
          Length = 1147

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/1042 (38%), Positives = 600/1042 (57%), Gaps = 40/1042 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P F+HL++HS +S+ +G   + + + + A ++ PA+ ++D  NLF  ++F +     G+
Sbjct: 3    TPRFIHLRLHSEFSVTDGITRIGDAVKRAALERMPALGLSDLMNLFGMVKFYKACLGKGV 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS-TAEGYQRLIELVSRMYLLDQGK 126
            +PI+     ++   N    +Q        PS  LL++    GY RL EL++  Y L+Q +
Sbjct: 63   KPIVAVDAWLE---NPADRDQ--------PSRCLLIAMNTAGYHRLSELLTDAYRLNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +   WL     E LI ++G   G   +A    + ++A+     + + F  R Y+ +
Sbjct: 112  GRAELQREWLTREACENLIFVSGAQHGDTGQALLAGNLELAQALARDWAQRFPGRCYLEI 171

Query: 187  QR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            QR      D   E +++ LA    LP+VAT+   FL  +D+ AH+  + +A   ++    
Sbjct: 172  QRTGKPEADTCTE-RMLWLAGETGLPVVATHPVQFLDRDDFMAHEARVCIAEGEMLGNPK 230

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC--- 300
            R R  T + Y K+  EM ++F+D+PEALEN+VEIARRC+  + +    LP F   +    
Sbjct: 231  RVRHYTEEQYFKSTDEMAALFADVPEALENSVEIARRCNIEILLGKNFLPDFPTPDGLSL 290

Query: 301  -DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             D + K  E  L  +  A     L   A  +      YR+RL FEL+ I +M F GYFLI
Sbjct: 291  DDYLIKRSEEGLVERMQA-----LYPDAGQREAEMPRYRERLKFELDTIIQMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N  PVGPGRGSGAGS+ A+++ ITDI+PL ++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKANGCPVGPGRGSGAGSLVAFSIGITDINPLDYALLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQD R  VI YV+ +YG + V+QI TFG++ AKA +RDVGR L +PYS  D L KLI
Sbjct: 406  IDFCQDNRWRVIEYVRERYGADAVSQIATFGTMAAKAVVRDVGRVLDLPYSFCDGLSKLI 465

Query: 480  PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P    SL  A+  +   +E    +  V +L  +++KLEGL R+   HA G++I    
Sbjct: 466  PAAPGKQYSLDDAVEMEPILKERLEKEEEVSQLWALAKKLEGLTRNIGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            ++   PMY+    D  PV+  +   +E  GL+KFDFLGL+ LT++  +++++       D
Sbjct: 526  ITDFCPMYQASGDDASPVSMLDKGDVEDVGLVKFDFLGLRNLTIIDLAVNYIKALDPAFD 585

Query: 598  LSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            L L  +PF D   Y +L    T  +FQLES GM++ LE ++PD  EDIIA+++LYRPGP+
Sbjct: 586  LDLNHMPFTDPAAYRVLQQANTTAVFQLESEGMKKLLEKLKPDRFEDIIAVLALYRPGPL 645

Query: 656  DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             + +V  +  RK GK+++   HP +   L  T GVI+YQEQVMQI+Q++ GY+L  AD+L
Sbjct: 646  GSGMVDDFILRKAGKQEVDYFHPDLTACLDPTYGVIVYQEQVMQISQIIGGYTLGGADML 705

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM K +  F  GA K G  K +A ++F+L+AKFA+YGFNKSH AAYAV+S
Sbjct: 706  RRAMGKKKPEEMAKHRGIFCEGAEKKGYPKALAEHLFDLMAKFAEYGFNKSHTAAYAVVS 765

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGD 832
            YQTAW+K HYP  F+AA+M+ E+DN ++++ F  D+    ++ +PP +N     F  V  
Sbjct: 766  YQTAWLKAHYPSAFMAATMSSELDNTDQLRVFYDDSLANQLEFLPPDINESVYRFVPVDA 825

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             RI Y+L AIKG G     HI     +   F  L DFC R D + +NRR +E+L+ AGA 
Sbjct: 826  RRIRYALGAIKGTGQAAVEHIEAVRKEGGRFTDLFDFCRRTDKRIVNRRTIEALIRAGAF 885

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEKGTFSDKITLEKFSVENSSV 950
            D    +R +L+    N++      E+   N ++  +F     + +  + + +    + + 
Sbjct: 886  DTLEPNRARLIA---NVELAMTMAEQEAQNANQGGLFDLLDTSAAPAVEMMQVRPWDEAT 942

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R   E+  +GF+ SGHP   +   +R++ +K     +A  +     LA  ++  + K   
Sbjct: 943  RLTEEKTAIGFFLSGHPFHAHADTVRRL-VKTPLNRIAPKKEPQW-LAGTIMGVRTKVGN 1000

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G ++ +V   +   + E +FF
Sbjct: 1001 RG-KMAFVQLDDGTAKLEVSFF 1021


>gi|167626567|ref|YP_001677067.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
            philomiragia ATCC 25017]
 gi|167596568|gb|ABZ86566.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
            philomiragia ATCC 25017]
          Length = 1159

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/1025 (39%), Positives = 601/1025 (58%), Gaps = 43/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL++H+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A + G++PI
Sbjct: 2    FSHLRIHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALSNGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSV 129
             G +L ID            T F  V  +VLL    +GYQ ++ LVS+ Y   D+     
Sbjct: 62   FGVELKID------------TEF-GVCDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIP 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL+ I    +I L GG +G + +A         E+ +     +FG   Y+     
Sbjct: 109  LIPKDWLKNINLANVICLNGGQNGELGKAILAKDDIRVEEIISESIAIFGRDNYIIEIHK 168

Query: 190  RGYDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDR 245
              Y+    Y E + ++LA  H L  VATN ++F+  +DY+ H++   +   +T++ +  +
Sbjct: 169  LEYENEGLYNE-KALELASKHNLIAVATNLTVFMESDDYDIHEIRACINEKTTILDESRK 227

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + T + YLK+  EM   FS+LP  LENT+ IA+RC+    +  P LP       D    
Sbjct: 228  SKFTREQYLKSADEMYQTFSELPVLLENTLAIAKRCNVTFDLGKPCLPT-----VDIPDG 282

Query: 306  EEENELRNK-AVAGLEVRLAQ----GAIAKGYHA-QDYRQRLDFELNVIARMKFSGYFLI 359
              E E  +K    GL+ RLA+      + K  H  + Y+ RL  E+++I  M F GYFLI
Sbjct: 283  LTEREYFSKLCYQGLDKRLAKILENRPVDKHEHIIKVYKDRLQREIDIICDMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFD
Sbjct: 343  VEDFIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC   RD VI+YV+ KYG + V QIIT+G++ AK  +RDV R +   +   DR+ KLI
Sbjct: 403  IDFCIQGRDRVIKYVEQKYGKQSVGQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLI 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P  P      + + +     +   AD  V  ++E +QKLEGL R    HAAGIVI    +
Sbjct: 463  PETPGTTFK-KILHEGEPLYDEMQADEEVAEIVEKAQKLEGLPRSLGKHAAGIVISPTVI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK--- 595
            S   P+Y + +    VTQF+   +E  GL+KFDFLGLK LT+++ ++  + A+R      
Sbjct: 522  SDFAPVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIIKNAIASINAKRSANETP 581

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D+S IP DD +T+ LL    T+GIFQLES GM+Q ++ +     E+IIALV+LYRPGP+
Sbjct: 582  LDISDIPLDDEKTFKLLQAGKTIGIFQLESQGMQQIVKDLGTSNFEEIIALVALYRPGPM 641

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            +NI  + +RK+G+++   +HPL++ +L+ET G+ +YQEQVMQ+AQ L+GY+L  AD+LRR
Sbjct: 642  ENIPTFVDRKHGRKQTTYLHPLLEEVLRETYGIPVYQEQVMQMAQKLAGYTLGGADLLRR 701

Query: 716  AMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AMGKK  EEM++Q++ F  GA+K + I   +A  IF+ +  FA YGFNKSHAAAYA+I+Y
Sbjct: 702  AMGKKKPEEMEQQRKIFKEGAAKYHNIEAGLADEIFDQMEAFAGYGFNKSHAAAYALIAY 761

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDN 833
            QTAW+K HYP E++AA M+ +M N +++ KF  DA+   I ++ P+VN    D       
Sbjct: 762  QTAWLKAHYPDEYMAALMSGDMGNTDQLVKFILDAKNMGITVLAPNVNKSVYDCIAASKG 821

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I   L AIKG+G    + I+ E  A   F S+ D   RVD +K+N++ LE+L FAGA+ 
Sbjct: 822  TILLGLGAIKGLGGEAIKSILNEREASGEFSSIFDLTRRVDLRKVNKKALEALCFAGAIK 881

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR 951
                +R     S++   K A +V +       ++F   +        LE+   VE  ++R
Sbjct: 882  DISKNRATAFNSIEKAIKNAGYVNEMAAAGQNDLFGFTEQESDTDTELERECIVEEWNLR 941

Query: 952  --FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQK 1007
                NE++ LG YFSGH +D        +     E+     + GN++R +A+M+    ++
Sbjct: 942  ELLINEKKALGMYFSGHIIDDESHWRNHVSFSDLEKIQKPNMDGNSVRIIASMITPPARR 1001

Query: 1008 KTRKG 1012
            KT+ G
Sbjct: 1002 KTKTG 1006


>gi|254368720|ref|ZP_04984733.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica
            FSC022]
 gi|157121641|gb|EDO65811.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica
            FSC022]
          Length = 1159

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/1022 (39%), Positives = 602/1022 (58%), Gaps = 41/1022 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRI 131
             +L +D            T F  +  +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVD------------TEF-GICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               WL E+  E +I L GG  G + +A        A++ +    ++FG   Y+       
Sbjct: 111  PKFWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170

Query: 192  YDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247
            Y+    Y E + ++ A  + L  VATN ++F+  +DY+ H++   +   +T++ +  + +
Sbjct: 171  YENEGLYNE-KALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP  +       +KE 
Sbjct: 230  FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPT-VNIPAGLTEKEY 288

Query: 308  ENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             ++L      GL+ RL +      A    +  + Y+ RL  E+++I  M F GYFLIV D
Sbjct: 289  FSKL---CYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 346  FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  
Sbjct: 406  CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P      + + +     E   AD  V  ++E +QKLEGL R    HAAGIVI    +S  
Sbjct: 466  PGTTFK-KILHEGEPLYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK---VDL 598
             P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  + A+R      +D+
Sbjct: 525  APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI
Sbjct: 585  ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + +RK+G+++I  +HPL+  +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMG
Sbjct: 645  PTFIDRKHGRKQITYLHPLLKGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KK  EEM+KQ++ F  GA+K + I   +   IF+ +  FA YGFNKSHAAAYA+I+YQTA
Sbjct: 705  KKKPEEMEKQRKIFKEGAAKHHNIDTKLVDEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIY 836
            W+K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I 
Sbjct: 765  WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGMIL 824

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L AIKG+G    + I+ E      F S+ D C RVD +K+N++ LE+L +AGA+    
Sbjct: 825  LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR--F 952
             +R     S++   K A +V +      +++F   +        LE+   VE  +++   
Sbjct: 885  KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQKKTR 1010
             NE++ LG YFSGH +D        +     E+     + GN++R +A+M+    ++KT+
Sbjct: 945  INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004

Query: 1011 KG 1012
             G
Sbjct: 1005 TG 1006


>gi|294101731|ref|YP_003553589.1| DNA polymerase III, alpha subunit [Aminobacterium colombiense DSM
            12261]
 gi|293616711|gb|ADE56865.1| DNA polymerase III, alpha subunit [Aminobacterium colombiense DSM
            12261]
          Length = 1144

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/1042 (38%), Positives = 632/1042 (60%), Gaps = 44/1042 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+GA+    + +++A+   PA+A+TD   ++ A+EF  +  AAGI+PI
Sbjct: 6    FVHLHVHSEYSLLDGAIRCGELAERVASWGMPAVALTDHGAMYGAIEFYDRCLAAGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +D + +     +G+        ++LL    +GY  LI+LVS +   D      R
Sbjct: 66   VGCEVYVDPEGHTSREKKGRNFH-----LLLLAENQQGYNNLIKLVS-IANTDGFYYRPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            I    L +  ++G+I  +   +G I           A  +   ++ + G D  ++ +   
Sbjct: 120  IDYDLLTQY-SQGIIASSACLAGEIPSLILQGKENDALAKAHMYRDIMGEDNFFLEIM-- 176

Query: 190  RGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
              Y+   E  VV     Q+A  +   LVATN++ +L++EDY+ H++L+ V     ++  D
Sbjct: 177  --YNAIPEQAVVNRSLVQMARKNNFNLVATNDAHYLNKEDYDWHEILLCVQTGATINDPD 234

Query: 245  RPRV-TPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCS--FILQVHAPILPRFIEKEC 300
            R    T D YL++  EM S+F ++LP+AL+NT+ IA RCS  F L      LP F   E 
Sbjct: 235  RMSFSTNDFYLRSPEEMDSLFGAELPDALDNTLAIAERCSLKFDLGTRDYKLPSFDLPEG 294

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +    E+ L  +A+AGL+ RL +  +      ++Y++RLD+EL VI +M F+GYFLIV
Sbjct: 295  ETL----ESNLEKEAMAGLKQRLHKDNVP-----EEYKKRLDYELKVIKKMGFAGYFLIV 345

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            A  I+ AK  +IP+GPGRGS AGS+ AY+L IT++DPL+++LLFERFLNP+R+SMPD D 
Sbjct: 346  ASIIRAAKDRDIPIGPGRGSAAGSLVAYSLRITELDPLKYNLLFERFLNPERVSMPDIDT 405

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D     R+E+++Y+  KYG +RVAQIITF  +++KAA+RDVGRAL MPYS VD + KLIP
Sbjct: 406  DVSDKGREELLQYIAEKYGVDRVAQIITFDRMKSKAAIRDVGRALGMPYSDVDVVAKLIP 465

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             D A  +  +A+      R     D +V RLL+ + K+EGL RH S HAAG+VI   P++
Sbjct: 466  -DGARSIP-EALDQSEDLRNLTHKDLAVSRLLDSASKIEGLARHCSQHAAGVVITPMPIT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
             LVP+ R +  +  VTQF M+ +EK GL+K DFLGLKTL++L+++++ +   G    DL+
Sbjct: 524  DLVPVRR-IGENQIVTQFPMEPLEKLGLVKMDFLGLKTLSVLEEAINNIKLNGKTPPDLN 582

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP +D+ TY +L    TLG+FQLES+GMRQ L  ++PDC ED+IA+++LYRPGP+ + +
Sbjct: 583  KIPLNDNLTYEMLQRGNTLGVFQLESTGMRQLLRKIKPDCFEDLIAVLALYRPGPLGSGM 642

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            V  Y  RK+G+  +  +HP +  +LKET GVI+YQEQVMQ A  L+GYSL EAD+LRRAM
Sbjct: 643  VDQYIERKHGRAVVEYLHPELSEVLKETYGVILYQEQVMQSAACLAGYSLGEADLLRRAM 702

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  E M +Q++ F  G +++ +    A  IF+++ +FA YGFNKSH+AAYA+ISYQTA
Sbjct: 703  GKKKVEVMQQQRKMFADGCAQHNVPARKAEEIFDIIQEFAGYGFNKSHSAAYALISYQTA 762

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKI-KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            ++K ++  EF+AA +T ++ + + +  ++ ++ R   I+++PP VN+    F   D  + 
Sbjct: 763  YLKANFQPEFMAAYLTSQIGSKKDVMARYIREVRNSGIEVLPPDVNSSMESFAAVDEVVR 822

Query: 837  YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            + L A+   G      I+ A      F SL +F  RVD + +N+ V+E+L+ AGA D   
Sbjct: 823  FGLGAVAKAGHGAVEAIIAARECGGEFSSLWNFLCRVDLRVVNKSVIENLIKAGAFDGLN 882

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFE 953
             +R QL+ +L +    AQ  +    N+   +   ++ + S  +  E   +E+ ++  R +
Sbjct: 883  SNRRQLISALPDFVALAQR-KGEEKNQCSLLSLLDEDSESGDLEPELPDIEDYAIYERLD 941

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRK 1011
             E+ V+G Y SGHP   ++ ++ +        ++   R  N+  ++  M++S  +K T++
Sbjct: 942  MEKEVVGLYISGHPFTQHETLVSRYSTCSI-SNLKYWRSRNLFPQIGGMILSVHEKYTKR 1000

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  +G +   +   + E   FP
Sbjct: 1001 GDPMGILEVEDAESKLEVICFP 1022


>gi|262376213|ref|ZP_06069443.1| DNA polymerase subunit III [Acinetobacter lwoffii SH145]
 gi|262308814|gb|EEY89947.1| DNA polymerase subunit III [Acinetobacter lwoffii SH145]
          Length = 1190

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/1013 (38%), Positives = 597/1013 (58%), Gaps = 48/1013 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++     +Q PA+A+TD +NL +A++F  K  + GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRIPDLVKAAEEEQMPALALTDLSNLHAAVKFYGKCLSKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++  ++ +MT              LL  T  G++ L ELVS  ++   G+Q   
Sbjct: 63   LGSEIRLNDAEH-RMT--------------LLAMTNTGWRNLTELVSEGFI--SGQQLDI 105

Query: 131  ICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             C+   W+     E +I L G  S  + +    ++ Q AE  L  + + FG+R+Y+ L R
Sbjct: 106  PCVQKQWILN-QPEDMIALLGMHSD-VGKMLMSSNPQKAEPLLEEWVEKFGNRVYLALTR 163

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             +R  +     + V+LA  + + +VA N+  F++ +DYEAH+  + +A   V+    RP+
Sbjct: 164  TNRPDEDNFILEAVKLAKKYNIGVVAHNDVHFMTRDDYEAHEARVCIADGYVLGDNRRPK 223

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P+ Y K+  EM ++FSD+P A+ENT  IA+RC+  LQ+    LP +   E   I   
Sbjct: 224  TYSPEQYFKSAEEMTALFSDIPSAIENTYHIAKRCNVTLQLGKYFLPDYPIPEGHTI--- 280

Query: 307  EENELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +    + +  GLE RL       Q         + Y +R+++E+N+I  M F GYFLIV
Sbjct: 281  -DTFFAHLSKEGLEERLNFLYPPEQRDEDWPEIRKPYDERIEYEINIINSMGFPGYFLIV 339

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+
Sbjct: 340  MDFIQWSKSNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYELLFERFLNPERVSMPDFDV 399

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC   RD VI YV   YG + V+QI TFG++ AK A+RDV R L   Y   DR+ K+IP
Sbjct: 400  DFCIAGRDRVIDYVARTYGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMIP 459

Query: 481  NDPAHPVSLQAIADDSRFRE--ARLADPSVD---RLLEISQKLEGLYRHASTHAAGIVIG 535
              P     L+++  + + ++     ++P  D    + E++ KLEG+ R+   HA G+VI 
Sbjct: 460  TKPLGLSLLESLEAEPQLKDIVTNPSNPDHDDAAEIWEMALKLEGITRNTGKHAGGVVIS 519

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--- 592
               ++    +  D      V QF+   +E AGL+KFDFLGL+ LT+++ ++  + +R   
Sbjct: 520  PTKITDFSAVMCDADGTGRVAQFDKDDVESAGLVKFDFLGLRNLTVIEDAVKNINKRIKA 579

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D++ I  +D + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRP
Sbjct: 580  DKPLDIAYIQLEDKDAYLVFANANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRP 639

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP+D I  + +R +G +    +HPL++ +L+ T G+++YQEQVMQ AQ  +GY+L  AD+
Sbjct: 640  GPMDLIPDFIHRMHGGD-FEYLHPLLEGVLEPTYGIMVYQEQVMQAAQYCAGYTLGGADL 698

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  EEM KQ++ FI GASK  I +  A +IF+ + KFA YGFNKSHAAAYA++
Sbjct: 699  LRRAMGKKKPEEMVKQRQIFIEGASKKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALV 758

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTAW+K HYP EFL+A +T EM N + +     D R+ N++++PPSVN     F   D
Sbjct: 759  AYQTAWLKAHYPAEFLSAVLTSEMQNTDNVVFLIDDCRKNNLEVLPPSVNMSLYQFHAID 818

Query: 833  NR-IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             + I Y L AIKGVG    + ++++ A + PF  L DFC R+D KK+N+R LE+L+ +GA
Sbjct: 819  EQTIVYGLGAIKGVGEAAMQSVIDSRAQEGPFRDLFDFCHRIDLKKINKRTLEALIRSGA 878

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSS 949
            LDC G  R  L+  L    + A+    NR     ++F   E+        ++ ++ E   
Sbjct: 879  LDCLGIDRADLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEVQRKPSKPVKPWADE--- 935

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            VR + E+  LG Y +GHP+DVY+  L+        E   T RG     A +VV
Sbjct: 936  VRLKGEKDTLGLYLTGHPIDVYRNELKAFVPCQINELTPTRRGVTTVFAGLVV 988


>gi|189218920|ref|YP_001939561.1| DNA polymerase III, alpha subunit [Methylacidiphilum infernorum V4]
 gi|189185778|gb|ACD82963.1| DNA polymerase III, alpha subunit [Methylacidiphilum infernorum V4]
          Length = 1159

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/1019 (39%), Positives = 597/1019 (58%), Gaps = 39/1019 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +HS YSLL+ +  + +++ K      PA+A+TD  NL+  ++F +   +  I+P
Sbjct: 4    NFVHLHLHSEYSLLDASARIKDVVSKAKQLGMPAVALTDHGNLYGTIDFYKACVSQNIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  I            K     +  + LL    +GY+ L++L+S+ +L +      
Sbjct: 64   IIGCEAYITSGSRFDR----KGSRSHIYHMTLLAKNNQGYKNLLKLISKAHL-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            RI L  L+E    GLI  +G  +G I +       + A+K      +LF  +  Y+ +Q 
Sbjct: 119  RIDLELLKE-HKAGLIGTSGCMNGEIPQKILEGDLKGAKKLAEELSRLFDPNCFYLEIQN 177

Query: 189  HRGYDRYRESQVV--QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H G    +E + V    A +  LPLVATN+  ++ +ED + HDVL+ +  ++ +    R 
Sbjct: 178  H-GLKEEKEIREVLADFAQSLGLPLVATNDVHYVEQEDAQFHDVLLCIGTASQIHDPKRK 236

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +   P+ Y K   +M  +F++ P+A+ENT  IAR C   +++     P +         K
Sbjct: 237  KYPCPEFYFKTPQQMAELFNEFPQAVENTANIARLCDVTIELGKNHFPSYT---LPSPYK 293

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 LR     GL+ R           ++  ++RL++EL+VI +  FS YFLIV DFI 
Sbjct: 294  THGEYLRTLCYEGLQKRYDN-------ISEQIKERLEYELSVIEQTGFSSYFLIVWDFIH 346

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AKK  IPVGPGRGS AGS+TAY L ITDIDP+++ L+FERFLNP R+S PD DIDFC +
Sbjct: 347  YAKKEGIPVGPGRGSAAGSLTAYVLGITDIDPIKYGLVFERFLNPQRVSPPDIDIDFCYN 406

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR +VI YV+ KYG   VAQIITFG+L AK A+RDV R L M Y + DR+ K+IP DP  
Sbjct: 407  RRSQVIDYVRKKYGERSVAQIITFGTLGAKMAVRDVARVLGMSYQEADRIAKMIPPDPQL 466

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A   + +  +    DP    +L I+ KLEGL R A  HAAG+VI +  L   +P+
Sbjct: 467  TLE-RARELNPQLDQLWENDPQSREVLTIATKLEGLTRQAGVHAAGVVISEGDLLDFIPL 525

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             R   +++ VTQ++M+ I + GL+K DFLGLKTLT++ + L  + ++  + +D    P D
Sbjct: 526  SRGEHNEI-VTQWSMEPIAEIGLLKMDFLGLKTLTVISECLALIKEKENILLDPKQFPLD 584

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY LL    T+G+FQLESSGM + ++ ++P  IEDIIALV+LYRPGP++NI  Y +R
Sbjct: 585  DKNTYELLGRGQTIGVFQLESSGMVELVKKLKPGNIEDIIALVALYRPGPMENIPAYADR 644

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K GK  I   HPL++P+LK+T GV+IYQEQVMQ A +L+GYSL E+D+LRRAMGKK  EE
Sbjct: 645  KLGKVPITYDHPLLEPILKDTYGVMIYQEQVMQAANVLAGYSLGESDLLRRAMGKKKPEE 704

Query: 725  MDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            M KQ+++FI G   KN I +  A+ IFE L KFA YGFNK+H+A Y  ++Y TA++K +Y
Sbjct: 705  MRKQRDQFIKGCKEKNNIPEEKAIQIFETLEKFAGYGFNKAHSACYGYLAYVTAYLKANY 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PV +L   ++ E  + EKI+    + R+  I ++PP ++   V F V    I + L+AIK
Sbjct: 765  PVFYLCTLLSYESGDTEKIELLVSECRRMGIGVLPPDISKSEVRFSVEGGSIRWGLSAIK 824

Query: 844  GVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG   A  I+E+   +  + SL D C R+  + LN+++LESL+ +GA D  G SR +LL
Sbjct: 825  NVGEAAAEAIVESRKKRGSYHSLFDLCLRISGRTLNKKILESLIKSGACDSLGRSRKELL 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF---SDKITLEKFSVENSSVRFENEQRVL 959
            +SL           K R +  +N+F  E+  F   +D+ +  K      ++R   E+ +L
Sbjct: 885  ESLPAALSAGSITSKERLSGQQNLF--EEHNFIDPTDRQSSAKGEDYPLNIRLHWEKELL 942

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRL--AAMVVSKQQKKTRKGSR 1014
            G Y S HPLD +   +R        E +++++   +N RL    M+   ++K ++K  +
Sbjct: 943  GTYLSSHPLDEWMSWIRLF----QNEPISSLKELADNSRLYVPGMITHIEKKTSQKSKK 997


>gi|169633232|ref|YP_001706968.1| DNA polymerase III, alpha chain [Acinetobacter baumannii SDF]
 gi|169152024|emb|CAP00899.1| DNA polymerase III, alpha chain [Acinetobacter baumannii]
          Length = 1187

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/1018 (38%), Positives = 594/1018 (58%), Gaps = 58/1018 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + +++     D+ PA+A+TD +NL +A++F       GI+PI
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + ++   +                  LL  +  G++ L E+VSR ++  +G+Q   
Sbjct: 63   LGSTIRLNDAQH---------------RATLLAMSDIGWKGLTEIVSRGFI--EGQQLSI 105

Query: 131  ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             C+   W+ E   + +++L  G    + +    ++ Q AE  L  + + FG+R+Y+ L R
Sbjct: 106  PCVQKEWVLEQHQDIIVLL--GQHSDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTR 163

Query: 189  HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                DR  E   +Q    LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   
Sbjct: 164  T---DRPGEEDFIQEAAKLAAKYNIGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDR 220

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-------I 296
            RPR+ +P+ Y K   EM+ +FSD+P A+ENT +IA+RC+  L++    LP +       I
Sbjct: 221  RPRLYSPEQYFKTSDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTI 280

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            +   + + KE   E R   +  +E R       +    + Y +R+D+E+ +I +M F GY
Sbjct: 281  DTYFEHLSKEGLKE-RLNYLYPVEKRGEDWPEIR----KPYDERIDYEVGIILKMGFPGY 335

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 336  FLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMP 395

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ 
Sbjct: 396  DFDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRIS 455

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPS------VDRLLEISQKLEGLYRHASTHAA 530
            K++P  P       AI  + + ++  + +PS         + E++ KLEG+ R+   HA 
Sbjct: 456  KMVPTKPLGVDLATAIEMEPQLKDI-VTNPSNPDNDDASEIWEMALKLEGITRNTGKHAG 514

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VI    ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + 
Sbjct: 515  GVVIAPGKITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNIN 574

Query: 591  QRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            +     D   +S +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA V
Sbjct: 575  KNSDSNDPLNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFV 634

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            SLYRPGP+D I  + +R +G E    +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L
Sbjct: 635  SLYRPGPMDLIPDFIHRMHGGE-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTL 693

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAA
Sbjct: 694  GGADLLRRAMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAA 753

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA+++Y TAW+K HYP EF+AA M+ EM N + +     D R   ++++PPSVN     
Sbjct: 754  AYALVAYHTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYH 813

Query: 828  FKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESL 885
            F   D++ I Y L AIKGVG    + ++++   + P+  L DFC R+D KK+N+R LE+L
Sbjct: 814  FHASDDKTIVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEAL 873

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFS 944
            + AGALDC G  R  L+  L    + A+    NR +   ++F   E+        ++ +S
Sbjct: 874  IRAGALDCLGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKPAKPVKPWS 933

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             E   VR + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+
Sbjct: 934  DE---VRLKGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVL 988


>gi|303231851|ref|ZP_07318562.1| putative DNA polymerase III subunit alpha [Veillonella atypica
            ACS-049-V-Sch6]
 gi|302513458|gb|EFL55489.1| putative DNA polymerase III subunit alpha [Veillonella atypica
            ACS-049-V-Sch6]
          Length = 1135

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/1032 (38%), Positives = 620/1032 (60%), Gaps = 29/1032 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +SLL+G   L +++ +    +QPA+AITD  N+++A+ F ++  A GI+PI
Sbjct: 4    FVHLHSHTEFSLLDGISRLPDMVRRAKELEQPALAITDHGNMYAAIYFYKECVAQGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +     L    +G++    +  ++LL  T EGY+ L+++VS+    +      R
Sbjct: 64   IGCEVYVTEGSRLDKP-EGRSR-ERLKHLILLAETMEGYRNLVKIVSKAST-EGFNYKPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L++  ++G+I L+    G + +    ++   A + +  + + FG D  ++ +Q H
Sbjct: 121  ADHDLLRQY-SKGIIALSACIQGEVPQYILQDNMDGARRAVEWYIETFGKDNFFLEIQNH 179

Query: 190  RGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +  R  QV+ QLA  + L +VA+N+  ++ ++D +A D+ + +      ++ DR + 
Sbjct: 180  GLPEELRAQQVLCQLADEYGLGIVASNDFHYVMKDDADAQDIRVCIQTGRRRAEVDRLKF 239

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +F  +P ALENTV+IA RC+         LP F      D+ + E
Sbjct: 240  PNDEFYLKSGDEMAELFGHIPGALENTVKIADRCNVEFNFDEHHLPHF------DVPEGE 293

Query: 308  ENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++   + V   E+ RL       G  +++ ++RLD+EL+VI  M F  YFLIV D++++
Sbjct: 294  TSKTYLRKVCEREIPRLY------GDTSEELKKRLDYELDVIGTMGFEDYFLIVWDYVRY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++
Sbjct: 348  AREHDILVGPGRGSAAGSVVAYLLGITGLDPLQYDLLFERFLNPERVSMPDIDIDFCYEK 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E I YV  KYG  RV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+    
Sbjct: 408  RGEAIDYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELG-- 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            ++L+        +     DP+V  L +  QKLEG+ R++STHAAG+VI   PL   VP+ 
Sbjct: 466  ITLEKALKGKDLKALYDTDPNVKELFDFGQKLEGIARNSSTHAAGVVISADPLDDHVPV- 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
            ++   +  VTQ++   IE+ GL+K DFLGL+TLT++  +L  + A RG+ +DL  IP DD
Sbjct: 525  QNSNEEGFVTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
                 LLT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +V  + +
Sbjct: 585  KAACELLTKGDTSGVFQLESDGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFID 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK + 
Sbjct: 645  RRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKES 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  Q+E FI G+  NGI ++IA  +F+LL  FA YGFNKSH+AAYA I+YQTA++K HY
Sbjct: 705  VLKAQRESFIQGSINNGIEESIANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHY 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              EF+AA+MT  M N++K+  +    ++ N+Q++ P VN     F V D+ I + L  IK
Sbjct: 765  FPEFMAATMTSFMQNMDKLTYYINACKKHNVQVLGPDVNHSLRSFAVQDDAIRFGLGGIK 824

Query: 844  GVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG     R I E  A+  + S+ DFC RVDSK +N+R+LESL+  GA+D F  +R QLL
Sbjct: 825  NVGDNAIDRLIAEREANGLYTSITDFCRRVDSKVVNKRLLESLIRCGAMDGFEENRNQLL 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
               ++ Q      +K+      ++F  E     D I +      +   + ++E+   GFY
Sbjct: 885  HMYESAQAVGAKQQKDAAMGTMSLFG-ESTDDVDMIPVPNLPDLSEDDKLKDEKDYTGFY 943

Query: 963  FSGHPLDVYKPILRKMGIKG-YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             +GHPL  Y   L+ +   G   E+     G  I    ++  +  + T++G  +  +   
Sbjct: 944  ITGHPLQGYNKELKGLFELGQLLENPERFDGQTITFGGLIAERGDRPTKRGDVMSILRIE 1003

Query: 1022 EPAKEYEANFFP 1033
            + +   +   FP
Sbjct: 1004 DYSGSAQVVAFP 1015


>gi|223039577|ref|ZP_03609864.1| DNA polymerase III subunit alpha [Campylobacter rectus RM3267]
 gi|222879148|gb|EEF14242.1| DNA polymerase III subunit alpha [Campylobacter rectus RM3267]
          Length = 1328

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/1003 (38%), Positives = 596/1003 (59%), Gaps = 48/1003 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  +  +   + +    A AITD  N+F A++F +     GI+P+
Sbjct: 7   FTHLHLHTEYSLLDGANRIKELAKTLKSQGVKAAAITDHGNMFGAIDFYKTMKNEGIKPL 66

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  I   + L     G         + L+     GY+ L+ L S  Y+ +      R
Sbjct: 67  IGIEAYIHNGEEL-----GDKSTKQRFHLCLIAKNEIGYKNLMYLSSMSYI-EGFYYYPR 120

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI-------DRAFFFNSS--QVAEKRLLTFKKLFGDR 181
           I    L+E  +EG+I  +    G +       +R   F +   + A++  L +K +FGD 
Sbjct: 121 INKKILKE-HSEGIICSSACLQGEVNWNLNQSERNLRFGAGGYEAAKEAALWYKDVFGDD 179

Query: 182 LYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            Y+ + RH   D+ R + ++++LA    + ++ATN++ +  ++   AH+V M +A + ++
Sbjct: 180 FYLEIMRHGIGDQRRIDDEILRLAKELNIKVIATNDTHYTFKQRAGAHEVFMCIAMNKLL 239

Query: 241 SQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---- 295
              +R R +  + Y+K  ++M  +F+D+PEA+ NT EI  +C   +++     P F    
Sbjct: 240 DDPNRLRHSVHEFYVKTPAQMSELFADIPEAVTNTQEIVDKCDLTIKLGDATPPNFKFTL 299

Query: 296 ---IEKECDDIQKEEENELRNKAV-------AGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
               E+     + ++   + N +V        GLE RL           ++YR RL  E+
Sbjct: 300 EYAAERNLSLPEPDKRYSIPNDSVLFEHECRQGLEDRLK---FVPAERHEEYRTRLQREI 356

Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
           ++I +M F GY +IV DFI  AKK  +PVGPGRGS AGS+ AY+L ITD+DPL ++LLFE
Sbjct: 357 DIINKMNFPGYMMIVWDFINEAKKRGVPVGPGRGSAAGSLVAYSLKITDLDPLPYNLLFE 416

Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
           RFLNP+R+SMPD D+DFCQ+RR E+I YV  KYG   VAQ+ITFG L AK  +RDV R  
Sbjct: 417 RFLNPERVSMPDIDVDFCQNRRGEIIDYVIEKYGKFNVAQVITFGKLLAKGVIRDVARVC 476

Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            MPY++ D + KLI ++    +  QA   + +  E    + + +R+ + +  LEGL R+A
Sbjct: 477 DMPYAEADAMAKLILDEIGITLE-QAFEKEPKIGELIATNSNANRIWKFALDLEGLNRNA 535

Query: 526 STHAAGIVIGDRPLSQLVPMYR--DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
             HAAG+VI +  L    P++R  +   D  VTQ+++K++E   LIKFDFLGLKTLT++ 
Sbjct: 536 GMHAAGVVISNEELWNKTPLFRQPNAEEDHFVTQYSLKYLEDVDLIKFDFLGLKTLTVID 595

Query: 584 KSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            ++  + +R G ++    +  +D +TY  +++  TLG+FQ+ES GM++    M+PDC ED
Sbjct: 596 NAVKLVKKRFGKEIIWEQVNKNDPKTYETISSGQTLGLFQIESEGMQKVGADMRPDCFED 655

Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
           IIA++SLYRPGP+D I  +  RK+G E I  I P ++P+L+ T GVI+YQEQVMQI Q +
Sbjct: 656 IIAMISLYRPGPMDLIPDFIKRKHGLEPITYIFPELEPILEPTYGVIVYQEQVMQIVQTI 715

Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            G+SL  AD++RRAMGKKIKEEMD+ K +FI GA   G+    +  +FEL+  FA YGFN
Sbjct: 716 GGFSLGGADLVRRAMGKKIKEEMDRLKGKFIEGAQAQGLDGKKSGELFELILHFASYGFN 775

Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           KSHAAAY  +++QTA++KT+YP EF+AA +T E  N +KI ++  + ++ +I I+PPSVN
Sbjct: 776 KSHAAAYTYVTFQTAYLKTYYPAEFMAALITSEETNADKISRYIDECKRLDIAILPPSVN 835

Query: 823 TPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
               +F V    G + I Y L AIKGVG     +I+E  A   F  ++DF SRVD+ K+N
Sbjct: 836 KSAKEFSVVSEGGKDAIIYGLGAIKGVGGAAIENILEEQAKGEFKDIDDFVSRVDNFKVN 895

Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
           ++V ESL+ +G+ D FG +R  +L +LDNI +  +     + N  E++F  ++   + K 
Sbjct: 896 KKVFESLIKSGSFDSFGLTRKMMLNNLDNIVEACKNAATIKKNAAESLFGDDESMATVKT 955

Query: 939 TLEKFSVE---NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
           +L +   E    + ++FE E   +G Y SGHPLD Y+  + K+
Sbjct: 956 SLVRDDSELELKTKLKFELES--VGIYLSGHPLDEYREQISKI 996


>gi|219685116|ref|ZP_03539936.1| DNA polymerase III subunit alpha [Borrelia garinii Far04]
 gi|219673212|gb|EED30231.1| DNA polymerase III subunit alpha [Borrelia garinii Far04]
          Length = 1161

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/1014 (40%), Positives = 617/1014 (60%), Gaps = 32/1014 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A   GI+PI
Sbjct: 21   FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKVGIKPI 80

Query: 71   IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IG +  +        K  + GK  +     ++LL     GY+ L++L S  YL +     
Sbjct: 81   IGIEAYMAKTSKFFKKHDDLGKMSY----HLILLAKNEIGYKNLLKLTSISYL-EGFYYR 135

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+ LQR
Sbjct: 136  PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+     ++V+ +    +PL ATN+S +++ ED  A D+++ +      S ++R +
Sbjct: 195  HGIKDQDIVNERLVEYSRKLGVPLAATNDSHYVNREDAVAQDIIVCIGTGAKKSDENRLK 254

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECDDIQ 304
            + T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E + + 
Sbjct: 255  METNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIEFNTLG 314

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +     L    + GL+ R               + R  +EL+VI RM F GYFLIV DFI
Sbjct: 315  EY----LEYLTLEGLKFRYKT-------LTSKIKDRAFYELSVIIRMGFEGYFLIVWDFI 363

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDIDFC 
Sbjct: 364  KFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDIDFCF 423

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L KLIP+ P 
Sbjct: 424  EGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKLIPDGPK 483

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              VSL+ + DD+  +E   + P    L++ +  LEG+ RHASTHAAGIVI   PL+  VP
Sbjct: 484  --VSLKEVLDDNSLKEYFTSKPVYKELMDAALVLEGMNRHASTHAAGIVISKTPLTDYVP 541

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IP 602
            +Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +  R V  D  +  IP
Sbjct: 542  LYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIKNIP 599

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D +T+ +L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  + 
Sbjct: 600  DNDVKTFKMLGEGKSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQFI 659

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K G + I   HP +  +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK +
Sbjct: 660  AAKKGVKSIKYPHPDLKEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKKE 719

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            +EM++ K  F+ GA + G  K +A  IFELL  F+ YGFNKSHAAAY++I+YQTA++K +
Sbjct: 720  DEMNEMKVDFLRGAIEKGYDKEVASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLKAN 779

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L AI
Sbjct: 780  YPQYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFKEFRVTDSGISYGLNAI 839

Query: 843  KGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R  L
Sbjct: 840  KNLGEIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRKTL 899

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT--FSDKITLEKFSVENSSVRFENEQRVL 959
             ++LD + +     + N+     ++F   KG          + F   + S   E E+ +L
Sbjct: 900  FENLDRLIEVVSEDKNNKKLGQNSLFDVLKGQNPIQQNFNYQAFKEYSYSELLEFEKELL 959

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            GFY SGHPLD YK  +         + +AT + + ++ + ++ S +  +T++ +
Sbjct: 960  GFYVSGHPLDPYKKAINSFSSLNVLKDLATKKDSVVQFSGILNSVKVIQTKRNN 1013


>gi|295100819|emb|CBK98364.1| DNA polymerase III catalytic subunit, DnaE type [Faecalibacterium
            prausnitzii L2-6]
          Length = 1170

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/1055 (36%), Positives = 591/1055 (56%), Gaps = 62/1055 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSLL+GA  ++ ++D++    Q AIAITD   ++  ++F + A  AGI+P+
Sbjct: 14   FVHLHIHTEYSLLDGACRIDQLMDRVKECGQSAIAITDHGVMYGCVQFYKAAKKAGIKPV 73

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +      N+          ++LL     GY+ LI++VS  ++  +G  S  
Sbjct: 74   IGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLIKMVSAAFV--EGFYSKP 127

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
                 L E   EGLI L+   +G I +A      + A+   L ++ LFG    Y+ LQ H
Sbjct: 128  RVDKQLLEQYHEGLICLSACLAGEIPQAILAGDYERAKSTALWYQDLFGKGNYYIELQDH 187

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                D     Q+++LA    +P+ ATN+S +L ++D +   +L+ +     +   DR   
Sbjct: 188  GLEEDTIVLPQLIKLARETGIPMAATNDSHYLRKDDAKMQSILLCIQTGKTIQDADRMEF 247

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP-----------RFI 296
              D  Y+K   EM  +F+ +PEA  NT +IA +C+F        +P            F 
Sbjct: 248  RTDEFYVKTTDEMYELFAMVPEACANTQKIADQCNFDFDFGHTKIPYYKAPNGMDNQEFF 307

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            EK C D               GLE R            Q  + RL +E+ V+  M ++ Y
Sbjct: 308  EKLCWD---------------GLERRYGSDV------PQSNKDRLTYEIGVVKSMGYTNY 346

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            +LIV D+I +AK   IPVGPGRGSGAGS+ AY + ITDIDP+R++L+FERFLNP+R+SMP
Sbjct: 347  YLIVWDYINYAKSQGIPVGPGRGSGAGSIAAYCVGITDIDPIRYNLIFERFLNPERVSMP 406

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC +RR EVI YV  KYG + VAQI+TFG++ A+ A+RDVGR + MPY  VD + 
Sbjct: 407  DFDVDFCYERRQEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGMPYQSVDVVA 466

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            K +P +    +  +A+      +    +DP V  L++ + K+EG+ RHASTHAAG+VI  
Sbjct: 467  KQVPMELKMTLK-RALEVSPELKRMYDSDPQVTELIDTALKVEGMPRHASTHAAGVVITP 525

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
             P    +P+  +    LPVTQFNM  IE+ GL+K DFLGL+TLT+++ +   + ++    
Sbjct: 526  EPTDYYLPLATN--DGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIRDAEAAVQKKDPSF 583

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  + +DD  TY +L    T G+FQLESSGM+Q L G+QP  +ED+IAL+SLYRPGP+D
Sbjct: 584  SIQKLDYDDAATYKMLGQGETEGVFQLESSGMKQVLVGLQPQNLEDVIALISLYRPGPMD 643

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +I  Y   ++  +KI    P +  +L  T G I+YQEQVMQI + L+G+S  +AD +RRA
Sbjct: 644  SIPTYLRNRHEPDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRA 703

Query: 717  MGKKIKEEMDKQKERFISGASK----------NGISKTIAVNIFELLAKFADYGFNKSHA 766
            M KK    M+ ++E F+ G ++          NGIS+ +A  I++ ++ FA Y FNKSHA
Sbjct: 704  MSKKKHAVMEAEREHFVHGCTEPGHECPGCVANGISEEVANEIYDEMSSFASYAFNKSHA 763

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A YA +++QTA++K HYP EF+AA +T  +DN +K+ ++  +  +  ++++PP VN    
Sbjct: 764  ACYAYVAFQTAYLKCHYPSEFMAALLTSVLDNTDKVIEYSGECARLGLKVLPPDVNISNG 823

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             F   + +I + L A+K VG      ++E   +KP+ SL DFC R+   +LNRR +E L+
Sbjct: 824  GFTADNGKIRFGLNAVKNVGRNLIERVVEERKEKPYSSLYDFCKRMHGTELNRRAVECLI 883

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF----SDKITLEK 942
             AGA D  G +R  L++++D I K  +   +       ++F+   G      +D   ++ 
Sbjct: 884  KAGAFDSMGVNRHSLVEAVDGIIKSVESDSRRNLEGQLDLFSVMSGESQTADTDSYEIKP 943

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE----ESVATIRGNNIRLA 998
            F   + +   + E+ V G Y SGHPLD Y+    +      +    E    + GN++R+ 
Sbjct: 944  FPEYSHTELLQQEKEVSGLYLSGHPLDAYREQSARFASNSIKELTGEDAHKLDGNHVRIV 1003

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              VV  +   T+  + + + +  +     E   FP
Sbjct: 1004 CTVVKNRMMTTKSNTMMAFTSVEDLTGTMEVIVFP 1038


>gi|304406873|ref|ZP_07388528.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9]
 gi|304344406|gb|EFM10245.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9]
          Length = 1087

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/1040 (39%), Positives = 604/1040 (58%), Gaps = 42/1040 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+GA  + ++  + A     A+A+TD   ++ A+ F +     GI+PI
Sbjct: 11   FVHLHVHSEYSLLDGAARVRDLAARAAELGMDALALTDHGVMYGAIPFYKACKENGIRPI 70

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +          + + P   +  ++LL     GY+ L++LV+ +  L+      R
Sbjct: 71   IGCEVYMTAGSRFDKGTRKENP---IYHLILLAKNETGYRNLMKLVT-IGQLEGLHYRPR 126

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I +  L     EG+I L+    G + +       + A+   L +K +FGD  Y+ LQ H 
Sbjct: 127  IDMESLAA-HAEGIICLSSCLGGEVPQHLLHGRPEEAKAAALRYKAIFGDDYYIELQDHG 185

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              ++ +   +++ LA    + L ATN++ +L  ED    DVL+ +     V  +DR ++ 
Sbjct: 186  IIEQKKVMPELIALAREIGVKLAATNDAHYLQPEDATMQDVLICIGTGKTVEDEDRFKIA 245

Query: 250  PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D  YLK+  EM ++F  +PEA+ NT EIA +C   L +    LP F          +  
Sbjct: 246  SDQLYLKSGEEMAALFRHVPEAIANTAEIADKCRLELSLGRAALPTFRPVPEGMSSADFL 305

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL      GL  R A      G      ++RLD+EL VI RM +S YFLIV DFI++A 
Sbjct: 306  AELCRD---GLASRYA------GAPEPAAQERLDYELAVIERMGYSDYFLIVWDFIRFAH 356

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ AY L ITD+DPL+  LLFERFLNP+R+SMPD DIDF  +RRD
Sbjct: 357  ERGIRTGPGRGSSAGSLVAYTLNITDVDPLKHKLLFERFLNPERVSMPDIDIDFNDERRD 416

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV  KYG E VAQIITFG++ A+AA+RDVGRA+ +P+ +VDR  KLIPN     + 
Sbjct: 417  EVIAYVSAKYGEEHVAQIITFGTMAARAAVRDVGRAMNVPFGEVDRAAKLIPNQLGITLE 476

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+      REA    P  + LL+++ K+EG+ RHASTHAAG+VI   PL+  VP+   
Sbjct: 477  -EALRISPELREASAKQPRTEALLKMAMKVEGMPRHASTHAAGVVISQEPLTHYVPLQAG 535

Query: 549  V-RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
              R+ L  TQ++M+ +E  GL+K DFLGL+TL++++++L ++ +  G  +D   I  DD 
Sbjct: 536  TDRTAL--TQYSMENLEAVGLLKMDFLGLRTLSIVERTLRWVKELYGRDIDFRTIADDDP 593

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             TY +L    T GIFQLES+G+R+ L+ M+P   EDI+++++LYRPGP++ I  Y   K+
Sbjct: 594  LTYEMLGRGETTGIFQLESTGVRRVLKEMKPSVFEDIVSVLALYRPGPMEFIPKYIQGKH 653

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+ ++   HP ++P+L +T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E +D
Sbjct: 654  GQVEVEYPHPSLEPILSDTYGIIVYQEQIMQIASAMAGFSLGEADLLRRAVSKKKREVLD 713

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +++  F+ G+ K G ++  A  +++++ +FADYGF ++HAAAY V+++QTA++K HYPV 
Sbjct: 714  EERAHFVGGSLKQGYAEADANLVYDMIVRFADYGFPRAHAAAYGVLAFQTAYLKAHYPVP 773

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF----KVGDNR--IYYSLA 840
            F+A+ +     N  K  ++    R+  + ++PP VN   V F    + G+ R  I + LA
Sbjct: 774  FMASMLASVTGNQRKTAEYVDACRRMGMDVLPPDVNESGVTFTPVHRAGEARGAIRFGLA 833

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            A+K VGT     IM+  A++P+DSL D C RVD + +N+RV+ESLV +GA D     R Q
Sbjct: 834  AVKNVGTQAIESIMKERAERPYDSLTDMCRRVDLRVVNKRVMESLVQSGATDSLPGHRSQ 893

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR-FENEQR-- 957
            LL +LD I   A    K+R     N+F      F + I  E   VE   VR F   Q+  
Sbjct: 894  LLGALDEIVDAAAKWRKDREELQINLFG-----FDEVINWE---VELPDVRPFSTGQKLE 945

Query: 958  ----VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
                +LG Y SGHP+D  +  L   GI    +      G       MVVS +   TRKG 
Sbjct: 946  LERELLGLYLSGHPIDAVEEALSPHGIDRLVDLAEAEDGTLAVFPIMVVSVKPMMTRKGQ 1005

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             + ++   +     EA  FP
Sbjct: 1006 AMAFLEVEDRIMRVEAVAFP 1025


>gi|45656127|ref|YP_000213.1| DNA polymerase III subunit alpha [Leptospira interrogans serovar
            Copenhageni str. Fiocruz L1-130]
 gi|45599360|gb|AAS68850.1| DNA polymerase III alpha subunit [Leptospira interrogans serovar
            Copenhageni str. Fiocruz L1-130]
          Length = 1173

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/1041 (38%), Positives = 610/1041 (58%), Gaps = 42/1041 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H++YS+L+GA+ +  ++  +      ++A+TD  N+F A+EF  +A   GI+PI
Sbjct: 8    FAHLHLHTNYSMLDGAIRIKELMQHVKECGMSSVAMTDHGNMFGAVEFYNEAIKQGIKPI 67

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   +  + T   K        ++LL    EGY+ LI L S+ Y     K++ R
Sbjct: 68   IGSEFYVS-PNRKQETEMVKIADGNAYHLILLAKNEEGYKNLIRLSSKSYTEGFYKKA-R 125

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN----SSQVAEKRLLTFKKLFGDRLYVNL 186
            I    L    +EGL+ LT   +G ++R         S Q+A K    F+K   +  Y+ +
Sbjct: 126  IDYDLLDR-HSEGLVCLTACLAGEVNRKILEGKIDESFQLAGKLNEIFRK---EDFYMEI 181

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++     QV +      +PLV TN+S FL + D EA D+L+ +     ++    
Sbjct: 182  QNHGIPEQMTVAKQVYEFGKKTGIPLVVTNDSHFLKKNDQEAQDILLRIGMQKRITDPME 241

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + Y+KN  EM  IF ++PEA  NT+EI+ + +  LQ    +LP F   E  D   
Sbjct: 242  FGFNGEFYVKNGDEMAKIFPEIPEAFYNTLEISNKVNLKLQFGNYLLPEFEVPEGYD--- 298

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                     A + LE  + +G I + Y   + + ++R+ FELN I  MKF+GYFLIV D+
Sbjct: 299  ---------ADSYLEKLIWEG-IERKYLNLSPEIKERVIFELNTIKNMKFAGYFLIVQDY 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I +AK+N IPVGPGRGS AGS+ AYAL IT+++PL+ +LLFERFLNPDR  MPD D DFC
Sbjct: 349  INYAKRNGIPVGPGRGSAAGSIVAYALGITNVEPLQHNLLFERFLNPDRKDMPDIDTDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EVI Y++ +YG E+V QIITF SL AKAAL+DV R L +P+ + + + K  PN  
Sbjct: 409  VERREEVINYIRRRYGEEKVGQIITFNSLAAKAALKDVARVLNLPFGEANEMTKAFPNKL 468

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +S +A++  S  +     D    ++  I+Q+LEG YR    HAAG+VI   PL ++V
Sbjct: 469  GMSIS-EALSTSSELKNFSEKDDINHKIFAIAQRLEGNYRQPGRHAAGVVISPYPLEEVV 527

Query: 544  PMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            P+      + P     VTQ++   +E  GLIK D LGLK LT L  ++  + Q RG++++
Sbjct: 528  PLSTVAEKEKPGVRAIVTQYDKNNLESIGLIKMDILGLKNLTTLDYAIKLIEQRRGIRIN 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  I +DD  TY LL    TLGIFQLES+G+   +   Q    ++I+AL++LYRPGP+  
Sbjct: 588  LDEISYDDANTYSLLRKANTLGIFQLESTGITDLVAKSQVSNFDEIVALIALYRPGPMGE 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             ++  Y +RK+GK+++   HP  +P+LKET GV +YQEQVM I++++ G+S+ ++DVLR+
Sbjct: 648  GMLDEYLDRKSGKKQVTYPHPSCEPILKETFGVPVYQEQVMSISRVVGGFSVGDSDVLRK 707

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AM KK  + MDK K +F+ GA K GI + +A ++FE L +F  YGFNKSH+ AYA+I+YQ
Sbjct: 708  AMAKKKADLMDKLKVQFVEGAVKQGIQEKVAKDLFEQLERFGGYGFNKSHSVAYAIITYQ 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834
            TA++K +Y +E+L A +  +      I K+  +AR+  IQI+ P V+     F V DN  
Sbjct: 768  TAYLKANYTIEYLTALLASDHGKTTDIVKYINNAREMGIQILNPDVSESQASFSVIDNTT 827

Query: 835  IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L+A+KGVG T A  I++A      F +L+DF   +D++ +N++V E+L+ AGALD 
Sbjct: 828  IRFGLSAMKGVGETAANSIIQARTKVGSFRTLQDFALNIDTRLINKKVFEALIQAGALDS 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEKGTFSDKITLEKFSVE-NSSVR 951
            FGY+R  L +S+D+I  +AQ  E+ R N+ + ++F +E+ +FS  + L K ++E     +
Sbjct: 888  FGYTRKCLFESVDSILTFAQK-EQERANEGQFSLFGNEESSFS--LNLPKDALEWEIDEK 944

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
             + E+ + G Y SGHPLD Y+  L+ +     E+      G  + +A ++ SK  K +++
Sbjct: 945  LKREKAIAGLYLSGHPLDKYEKQLKSLKTIPIEKFDDLKSGTKVEVAGVISSKNIKLSKR 1004

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
                      +   E E   F
Sbjct: 1005 NEEFANFKLEDRTGEIECVAF 1025


>gi|251798458|ref|YP_003013189.1| DNA polymerase III subunit alpha [Paenibacillus sp. JDR-2]
 gi|247546084|gb|ACT03103.1| DNA polymerase III, alpha subunit [Paenibacillus sp. JDR-2]
          Length = 1220

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/1027 (38%), Positives = 603/1027 (58%), Gaps = 12/1027 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL+GA  + +++ + A     A+A+TD   ++ A+ F +   A GI+P
Sbjct: 7    SFVHLHVHSEYSLLDGAARIRDLVARAAEQGMKALALTDHGVMYGAIPFYRACLARGIKP 66

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++        +   +   P   +  ++LL     GY+ L++LVS  +L +      
Sbjct: 67   IIGCEMYFTAGSRFEKGTRKDNP---IYHLILLAKNETGYRNLMKLVSIGHL-EGFHYKP 122

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L E  +EGL+ L+    G I +    +  + A    + +K++FGD  Y+ LQ H
Sbjct: 123  RIDPEVL-EAHSEGLVCLSSCLHGEISQHLLHDRREEALTAAMRYKRIFGDDFYLELQDH 181

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D+ +  + +++LA    + L ATN+  +L+ ED    DVL+ +     V   DR ++
Sbjct: 182  GMLDQKKVAAAMIELARETGIKLTATNDVHYLTPEDAAVQDVLICIGTGKSVDDTDRMKM 241

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  Y+K+  EM  +F  +PEA+ +T EIA +CS  L      LP F            
Sbjct: 242  GTDQLYMKSGEEMELLFRHVPEAIRHTAEIADKCSLELTFGRAALPVFRPVPGGMTSTAY 301

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL    +A     L Q +    Y  Q    RL +EL+VI  M FS YFLIV DF+++A
Sbjct: 302  LAELCRSGLASRYAGLPQWSEDPAYREQ-AEARLAYELSVIENMGFSDYFLIVWDFVRFA 360

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I  GPGRGS AGS+ AY L ITD+DPL++ LLFERFLNP+R++MPD DIDF  +RR
Sbjct: 361  HEQGIRTGPGRGSSAGSLVAYVLRITDVDPLKYKLLFERFLNPERITMPDIDIDFNDERR 420

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV  KYG E VAQIITFG++ AKAA+RDVGRA+ +P+++VDR  K+IPN   H  
Sbjct: 421  DEVIAYVSAKYGDEHVAQIITFGTMAAKAAVRDVGRAMNVPFAEVDRAAKMIPNQ-LHIT 479

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+      REA    P  D +++++ K+EG+ RHASTHAAG+VI   PL+  VP+ +
Sbjct: 480  LEEALRISEGLREACQRQPRTDAMIKMALKVEGMPRHASTHAAGVVISGGPLTDYVPL-Q 538

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDH 606
                   +TQ++M+ +E  GL+K DFLGL+TL+++++SL ++    G ++D   +P +D 
Sbjct: 539  AGSERTALTQYSMEHLEAVGLLKMDFLGLRTLSIVERSLAWVKGLYGKEIDFRKVPDNDP 598

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L    T+GIFQLESSG+R+ L+ M+P   EDI+++++LYRPGP++ I  Y   K+
Sbjct: 599  DTYAMLGRGETMGIFQLESSGVRRVLKEMKPSEFEDIVSVLALYRPGPMEFIPNYIQGKH 658

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G   +   HP ++P+L +T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E +D
Sbjct: 659  GLAPVKYPHPSLEPILSDTYGIIVYQEQIMQIASAMAGFSLGEADLLRRAVSKKKREVLD 718

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +Q+  F+ G+   G +   A  +++++ +FADYGF ++HAAAY V+++QTAW+K HYP+ 
Sbjct: 719  EQRAHFVKGSVSEGYTSEDANLVYDMIVRFADYGFPRAHAAAYGVLAFQTAWLKAHYPIP 778

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+A+ +     N  K  ++  + R+  I+++PP VN   V F   +  + + LAAIK VG
Sbjct: 779  FMASMLASVTGNQRKTAEYVDECRRMGIEVLPPDVNESGVTFTPVEGAVRFGLAAIKNVG 838

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            T     I +   ++PFDSL D C RVD + +N+RVLESL+ AGAL+     R Q L +L+
Sbjct: 839  TQAIEAIEKERRERPFDSLLDLCRRVDLRVVNKRVLESLIQAGALESLPGHRAQQLAALE 898

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
               + A    K R      +F  ++    D + L      ++  + E E+ +LG Y SGH
Sbjct: 899  ETVEAALKWRKEREELQIELFGFDEVQNWD-VELPDIRPYSTGEQLELERELLGLYLSGH 957

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            PLD  +  L  +G+  + E      G    + A VVS +    +KG+ +G++   +    
Sbjct: 958  PLDAVEEQLEPLGLDRFIELGEAAEGAAAFIGARVVSLKPFTNKKGNAMGFIEIEDRVMR 1017

Query: 1027 YEANFFP 1033
             E   FP
Sbjct: 1018 AEGVVFP 1024


>gi|90407915|ref|ZP_01216090.1| DNA polymerase III subunit alpha [Psychromonas sp. CNPT3]
 gi|90311006|gb|EAS39116.1| DNA polymerase III subunit alpha [Psychromonas sp. CNPT3]
          Length = 1170

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/1053 (38%), Positives = 602/1053 (57%), Gaps = 54/1053 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +  ++   AA   PAIA+TD  N    ++F   A +AG++
Sbjct: 10   PKFIHLRVHSDFSMVDGLTKVKALIANTAAMNMPAIALTDQTNFCGLVKFYTAAHSAGVK 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P++G  +D  +Q  +    Q +        I  L    EGY+ + EL+S+ Y   +G   
Sbjct: 70   PLVG--VDFWVQSEILEKEQFR--------ITALAMDNEGYKNITELISKAYF--RGHVG 117

Query: 129  VRICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R  L   WL+E    G+I+L+G   G + +       ++A +    ++  F  R Y+ L
Sbjct: 118  GRAILDQDWLKEY-NHGIILLSGAKEGDLGKMLLKGHFELASEITQFYQTYFPQRYYLEL 176

Query: 187  QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R  R  +       ++ A  H+LP+VATN  +F ++  ++AH + + +     +  + R
Sbjct: 177  IRTGRVKEETYIHHALEWAEKHQLPVVATNQVVFSNKTLFDAHVIRVCINQGYTLGDERR 236

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE--KECDD 302
            P   + + YL++  EM  +FSD+PEAL+N+VEIA+RC+  L++    LP F    K  +D
Sbjct: 237  PHDYSEEQYLRSPEEMCELFSDIPEALQNSVEIAKRCNVTLRLGECFLPDFPTQGKPIND 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               E   +  N   A LE    + +         Y +RL  EL VI  M F GYFLIV +
Sbjct: 297  YFIEVSRQGLN---ARLEFLFDKNSADFAQIRAPYDERLRIELEVINSMGFPGYFLIVME 353

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL+  LLFERFLNP+R+SMPDFDIDF
Sbjct: 354  FIQWSKDNGIPVGPGRGSGAGSLVAYALNITDLDPLKLDLLFERFLNPERVSMPDFDIDF 413

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VD + KL+P  
Sbjct: 414  CMERRDEVIDHVAQLYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDSISKLVPPT 473

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +S +A  ++ R +E       V  L+++ + LEG  R+A  HA G+VI    ++  
Sbjct: 474  PGMTLS-KAFEEEPRLQERYDGSEEVRDLIDMCRTLEGTIRNAGKHAGGVVISPTTITDF 532

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VD 597
             P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++Q +LD      + RG + ++
Sbjct: 533  APLYCDDEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWALDMANAHKSDRGEEAIE 592

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  I   + + + LL    T  +FQLES GM+  +  +QPD  ED+IALV+L+RPGP+ +
Sbjct: 593  IERISLTEPKCFELLKRYETTSVFQLESRGMKDLIRRLQPDSFEDMIALVALFRPGPLGS 652

Query: 658  IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N   RK+G+E +        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  A
Sbjct: 653  GMVDNFIERKHGREAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQILSGYTLGGA 712

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  F  GA  NGI   +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 713  DMLRRAMGKKKPEEMAKQRSTFEQGAINNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYA 772

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT WMKT YP  F+AA ++ +MDN +K+     + ++  + + PP VN     F V
Sbjct: 773  LVSYQTLWMKTFYPAYFMAAVLSADMDNTDKVVILVSECQRMGLNLCPPDVNEGQFKFNV 832

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              N RI Y + A+KGVG      I+EA +    F  L DFC+RVD K   +R++E L+ A
Sbjct: 833  DKNLRIIYGIGAVKGVGEGPINAIIEARTIGGDFRDLFDFCNRVDLKHCGKRIIEKLILA 892

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GALD  G  R  L+++L      A   ++  +    ++F          +T +   +EN 
Sbjct: 893  GALDNLGPHRAALMENLPLALASATQHKRAESFGQCDLFG--------VLTTDSADIENR 944

Query: 949  SVRFE---------NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
              + E          E+  LG Y +GHP++ Y+  +R    K   +  +  RG N R+A 
Sbjct: 945  FSKVEKWPEKQWLAGEKETLGLYLTGHPINQYEAHIRAFHCKPIVDLSSDRRGQNSRIAG 1004

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +++  +   T+ G R+G +T  +     +   F
Sbjct: 1005 LIIGLRVMVTKAGKRMGILTVDDRTARIDITIF 1037


>gi|163782295|ref|ZP_02177293.1| DNA polymerase III alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882328|gb|EDP75834.1| DNA polymerase III alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 1167

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1071 (39%), Positives = 615/1071 (57%), Gaps = 74/1071 (6%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E    FVHL +H+ YSLL+GA+ + +++ K       A+ ++D  NLF + +F +     
Sbjct: 3    EGVKDFVHLHLHTQYSLLDGAIKIEDLVKKAKEFGYRAVGMSDHGNLFGSFQFYKALKKE 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP---SIVLLVSTAEGYQRLIELVSRMYLL 122
            GI+PIIG +             +G     T      ++L+     G + L +L +  Y  
Sbjct: 63   GIKPIIGMEAYFTTGSRFDRKTKGSEDNITDKYNHHLILIAKNDTGLKNLFKLSTLAY-- 120

Query: 123  DQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             +G     RI    L++ G EGLI LT    G        N +Q AE+ +  FK +FG+ 
Sbjct: 121  KEGFYYKPRIDYELLEKYG-EGLIALTACLKGVPTYYASINETQKAEEWVKKFKDIFGED 179

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            L++ LQ +   ++   ++ ++++A  + + L+ATN+S +L+ ED EAH  LMA+     V
Sbjct: 180  LFLELQSNDIDEQAVANRNLIEIAKKYGVELIATNDSHYLNPEDREAHTTLMAIQMKRTV 239

Query: 241  SQ--KDRPRVTPDHYLKNRSEMV-----SIFSDLPEALENTVEIARRC--SF-ILQVHAP 290
                K   R   D       E V       F     AL NT+E+  R   SF + +    
Sbjct: 240  HDMTKGGFRCANDGLHFASPEEVWRKFEGKFDGWERALLNTLEVMDRTADSFDLFETSGY 299

Query: 291  ILPRFIEKECDDIQKEE--ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
            +LP +       + K+   E+ LR+ AV GL+ R+A+G   +    ++Y +RL+FEL+VI
Sbjct: 300  LLPEY------QVPKDTTLEDHLRDLAVRGLKQRIAKG---QAKDTREYWERLEFELDVI 350

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             RM F+GYFLIV DFI WAK N++PVGPGRGS AGS+ AY++ ITD+DP+R  LLFERFL
Sbjct: 351  NRMGFAGYFLIVQDFINWAKNNSVPVGPGRGSAAGSLVAYSIGITDVDPIRHGLLFERFL 410

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DFCQD RD VI YV++KYG E VAQIIT+  ++AK  LRDV RAL +P
Sbjct: 411  NPERVSMPDIDVDFCQDNRDRVIEYVKDKYGRENVAQIITYNVMKAKQTLRDVARALGLP 470

Query: 469  YSQVDRLCKLIPNDPAHPVSLQA---------------------IADD-SRFREARLADP 506
            YS  D+L KLIP        L                       I D+ ++FR+    + 
Sbjct: 471  YSTADQLAKLIPQGDVQGTWLSLEEMYSTPMEVLKERYGAHRGDIEDNVNKFRKLCKENA 530

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
             +D+L++I+ +LEGL RH S HAAG+VI  +PLS L+P++ D R     TQF+M  +E  
Sbjct: 531  EIDKLVQIALRLEGLTRHTSLHAAGVVIAPKPLSDLIPLFYD-RDGAVATQFDMTKLEDM 589

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K DFLGLKTLT L+   D + + RG +VD   +P DD + + LL    T G+FQLES
Sbjct: 590  GLLKMDFLGLKTLTELKGMRDLVKERRGEEVDFLSLPMDDPKVFELLQDGNTTGVFQLES 649

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK 683
             GM++ L+ ++PD  +DI+A+++LYRPGP+ + +V  Y NRK+GKE +    P ++ +LK
Sbjct: 650  RGMKELLKRLKPDSFDDIVAVLALYRPGPLKSGLVDRYINRKHGKEPVDYPFPELEEVLK 709

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET GVI+YQEQVM+++++L+G++  EAD LR+A+GKK K+ M++ +E+FI G+ + G  +
Sbjct: 710  ETYGVIVYQEQVMRMSRVLAGFTPGEADTLRKAIGKKKKDLMEQMREKFIKGSVERGFPE 769

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                 ++E + KFA Y FNKSH+ AY  ISY TA+MK HYP EF A  +T E  N  K  
Sbjct: 770  DKITKLWEDIEKFASYSFNKSHSVAYGYISYWTAYMKAHYPAEFFAVKLTTE-KNDNKFI 828

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
               +DA+    +I+PP VN   V F + G+  + + +  IKGVG   A+ I EA  D+ F
Sbjct: 829  NLIKDAKIMGFEILPPDVNRSDVGFIIEGEREVRFGIGRIKGVGEEAAKAITEARKDREF 888

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
              ++DF SRVD +K+N++VLE L+ AGA D  G  R +LL  L +  K    + +N    
Sbjct: 889  RGIQDFVSRVDGRKVNKKVLECLIKAGAFDFTGTKRDELLDRLSSSGKNMSSLAQN---- 944

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
              ++F    GT   K    K  + N  +R E E  V+GFY SGHPLD Y+ +L       
Sbjct: 945  --SLFG---GTQKKK----KLDI-NDILRMEKE--VIGFYISGHPLDKYEKLLAGK-YTP 991

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             EE     +G+ + LA  V + Q KKTR GS +  +   + +   E   FP
Sbjct: 992  IEELEGIGKGSTLTLAGAVSNLQVKKTRNGSYMAILNLIDKSGMVEVVAFP 1042


>gi|254430744|ref|ZP_05044447.1| DNA polymerase III, alpha subunit subfamily, putative [Cyanobium sp.
            PCC 7001]
 gi|197625197|gb|EDY37756.1| DNA polymerase III, alpha subunit subfamily, putative [Cyanobium sp.
            PCC 7001]
          Length = 1180

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/1068 (38%), Positives = 606/1068 (56%), Gaps = 63/1068 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++      PA+A+TD   ++ A+E  +    AGI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPAMVERAVELGMPALALTDHGVMYGAIELLKLCSKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPS------IVLLVSTAEGYQRLIELVSRMYLLD 123
            IIG         N      G    P  P       +V+L   A GY+ L++L S  +L  
Sbjct: 62   IIG---------NEMYVINGALDDPNPPKKERRYHLVVLAKNAVGYRNLVKLTSISHLRG 112

Query: 124  QGKQSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
               + +  R C+   L    +EGLI+ T    G I +A       VA +    ++++FGD
Sbjct: 113  MRGRGIFARACIDKQLLRQHSEGLIVATACLGGEIPQAILRGRPDVARQVAAWYQEVFGD 172

Query: 181  RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ +Q H G  DR   +++ ++     + L+ATN++ +LS  D EAHD L+ V    +
Sbjct: 173  DFYLEIQDHGGLEDRIVNTEIARIGQELGIELIATNDAHYLSVGDVEAHDALLCVLTGKL 232

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILP 293
            +S + R R T   Y+K+ +EM+++F+D  E      A+ NT ++A +      +    +P
Sbjct: 233  ISDEKRLRYTGTEYIKSEAEMLALFADHLEPDVIRRAVANTAQVAEKVEDYDILGRYQMP 292

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            RF   E         + L   A  GL  RL   A A    A  Y +RL FEL V+ +M F
Sbjct: 293  RFPIPEG----HTAVSYLSAVAEQGLRDRLELAAEAPFEPA--YGERLRFELEVMEQMGF 346

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL+V D+I++A++N IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R 
Sbjct: 347  PTYFLVVWDYIRFARENRIPVGPGRGSAAGSLVAYALGITNIDPVVHGLLFERFLNPERK 406

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   D
Sbjct: 407  SMPDIDTDFCIERRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDAD 466

Query: 474  RLCKLIPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            RL KLIP     P  L+ +    +  + FRE    DP V R ++++ ++EG  +    HA
Sbjct: 467  RLAKLIPVVRGKPAKLKEMIGPESPAAEFREKYEKDPDVRRWVDMAMRIEGTNKTFGVHA 526

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            AG+VI   PL +LVP+ R+    + +TQ+ M+ +E  GL+K DFLGLK LT++ K+LD +
Sbjct: 527  AGVVIAADPLDELVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLDLV 585

Query: 590  AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q  G  VD   +P DD  TY LL      GIFQLESSGMRQ +  ++P C+EDI ++++
Sbjct: 586  QQSTGETVDPDKLPLDDAATYGLLARGDLEGIFQLESSGMRQIVRDLKPSCLEDISSILA 645

Query: 649  LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            LYRPGP+D  ++  + NRK+G+E I   H  + P+L ET G+++YQEQ+M+IAQ L+GYS
Sbjct: 646  LYRPGPLDAGLIPKFINRKHGREAIDFAHDKLQPILNETYGIMVYQEQIMKIAQDLAGYS 705

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L EAD+LRRAMGKK K EM+K +  F+ GA++ G+   +A  +FE +  FA+Y FNKSH+
Sbjct: 706  LGEADLLRRAMGKKKKSEMEKHQTIFVEGATRRGVDTKVAEALFEQMVLFAEYCFNKSHS 765

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
             AY  +++QTA++K HYPV ++AA +T+     +K++++  +     I++MPP VN   +
Sbjct: 766  TAYGAVTFQTAYLKAHYPVAYMAALLTVNAGASDKVQRYIANCNAMGIEVMPPDVNASGI 825

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            DF    +RI + L+A++ +G    R ++E    D PF SL D C R+  ++LNRR LE+L
Sbjct: 826  DFTPVGDRILFGLSAVRNLGDGAIRQLIEVRQEDGPFRSLADLCDRIPGQQLNRRALEAL 885

Query: 886  VFAGALDCFGYS--RMQLLQSLDNIQKYAQWVEKNRTNKHENIF------------AHEK 931
            + +GALD    S  R QL+  LD I  +A    ++R +   N+F            +   
Sbjct: 886  IHSGALDALEPSGNRAQLMADLDLILDWASSRARDRASGQGNLFDLMASSSAAEPASAGG 945

Query: 932  GTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL-DVYKPI--LRKMGIKGYEE 985
                D  T  K +  N    + +   E+ ++GFY S HPL  + +P+  L  + +   EE
Sbjct: 946  AGGGDLSTAPKAAPVNDYPPTEKLRLEKELVGFYLSDHPLKQLGRPVRLLSPVALATLEE 1005

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 +   +   AMV   +Q  TRKG R+  +   +     EA  FP
Sbjct: 1006 QPDKAK---VSAVAMVPELRQVTTRKGDRMAVLQLEDLTGSCEAVVFP 1050


>gi|253577284|ref|ZP_04854602.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843288|gb|EES71318.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 1110

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/1060 (38%), Positives = 607/1060 (57%), Gaps = 47/1060 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL+GA  L +++ K AA    A+A+TD   ++ A+ F +     GI+P
Sbjct: 38   SFVHLHVHSEYSLLDGAARLEDLVAKAAASGMKALALTDHGVMYGAVPFYKLCKKHGIKP 97

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++        +  ++   P   +  ++LL     GY+ L++L S  + L+      
Sbjct: 98   IIGCEVYFTAGSRKERGSRKDQP---IHHLILLAKNETGYRNLMKLCSIGH-LEGFHYKP 153

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    LQ    EGL+ L+    G +         + A+K  L ++  FG+  Y+ LQ H
Sbjct: 154  RIDWDALQR-HREGLVCLSACLGGEVPFHLLRGHYEEAKKAALRYQAAFGEDFYLELQDH 212

Query: 190  RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ + +  +VQLA      LV TN++ +LS+ED E  DVL+ V     V  +DR ++
Sbjct: 213  GIPEQKKVNPLLVQLAGEIGAELVVTNDAHYLSKEDAEVQDVLICVGTGKTVDDEDRLKM 272

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   YLK   EM  +F  LPEA  NT +IA  C   L+    ILP +            
Sbjct: 273  HTNQLYLKTAEEMAQLFPHLPEAYANTAKIADSCELELEFDRHILPAYRPIPEGHTAGSY 332

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              EL  +   GL  R  +  + +    ++   QRL +EL +IA M FS YFLIV DFI +
Sbjct: 333  LAELCQQ---GLVDRYGELDVWRDLTEREKLEQRLRYELEIIASMGFSDYFLIVWDFIAF 389

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N I  GPGRGS AGS+ AY L ITD+DP++++LLFERFLNP+R++MPD DIDF  +R
Sbjct: 390  AHRNGIATGPGRGSSAGSLVAYVLRITDVDPIKYNLLFERFLNPERVTMPDIDIDFSDER 449

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG E VAQIITFG++ A+AA+RDVGRAL +P+ +VD++ KLIP      
Sbjct: 450  RDEVIAYVVDKYGAEHVAQIITFGTMAARAAVRDVGRALNVPFGEVDKVAKLIPGHLGMT 509

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ +    +        V RLL+++ K+EG+ RHASTHAAG+VI   PL+  VP+ 
Sbjct: 510  IE-RALKESPDLKAMYDGSERVKRLLDMAMKVEGMPRHASTHAAGVVISRDPLTDAVPL- 567

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
            ++      +TQ++M+ +E  GL+K DFLGL+TL+++++ ++++  Q G   D  L+P +D
Sbjct: 568  QEGSEHTALTQYSMENLEAIGLLKMDFLGLRTLSIIERCMNWIKEQSGDAPDFRLVPDND 627

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              TY +L    T G+FQLES+GMR+ L+ M+P   EDII+L++LYRPGP++ I  Y   K
Sbjct: 628  PATYEMLGRGETTGVFQLESTGMRRVLKEMKPSVFEDIISLLALYRPGPMEFIPKYIAGK 687

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+  +   HP ++P+LK+T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E +
Sbjct: 688  HGQITVEYPHPDLEPILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREVL 747

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+Q+  F+SG+ + G ++  A  +++++ +FADYGF ++HAAAY V+++QTA++K HYPV
Sbjct: 748  DEQRGHFVSGSVQQGYTEDEANVVYDMIVRFADYGFARAHAAAYGVLAFQTAYLKAHYPV 807

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF--KVGDNR--------- 834
            +F+A+ +T    +  K+ ++  + R+  I ++PP VN   V F  +VG            
Sbjct: 808  QFMASMLTAVTGSHRKVAEYIVECRRMGIVVLPPDVNESSVLFTPQVGAGSADAALSGEA 867

Query: 835  ---------------------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                                 I + LAAIK VGT     I+    ++PFDSL DFC RVD
Sbjct: 868  KGRDAKDGHAGSGQEPPALGVIRFGLAAIKNVGTQAIESILRERKERPFDSLLDFCRRVD 927

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             +  N+RV+ESL+  GA D     R QLL  LD   + A    K R      +F   +  
Sbjct: 928  LRTCNKRVIESLIQGGAFDSLPGHRAQLLAMLDETVEAALKWRKERDELQIQLFDFVESP 987

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
              D I         ++ + + E+ +LG Y SGHPLD +  +L   G+    +        
Sbjct: 988  NWD-IEYPDVPKFTAAQQLDLERELLGLYLSGHPLDDFDALLEGEGVDRLMDLAEAPDDT 1046

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +A MVVS +   T++G  + ++   +  +  E   FP
Sbjct: 1047 RTVVAGMVVSVKTITTKQGKAMAFMELEDQIERCEVVLFP 1086


>gi|260555310|ref|ZP_05827531.1| DNA polymerase subunit III alpha [Acinetobacter baumannii ATCC 19606]
 gi|193077117|gb|ABO11893.2| DNA polymerase III alpha chain [Acinetobacter baumannii ATCC 17978]
 gi|260411852|gb|EEX05149.1| DNA polymerase subunit III alpha [Acinetobacter baumannii ATCC 19606]
          Length = 1187

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/1018 (38%), Positives = 595/1018 (58%), Gaps = 58/1018 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + +++     D+ PA+A+TD +NL +A++F       GI+PI
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + ++   +                  LL  +  G++ L E+VSR ++  +G+Q   
Sbjct: 63   LGSTIRLNDAQH---------------RATLLAMSDIGWKGLTEIVSRGFI--EGQQLSI 105

Query: 131  ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             C+   W+ E   + +++L  G    + +    ++ Q AE  L  + + FG+R+Y+ L R
Sbjct: 106  PCVQKEWVLEQHQDIIVLL--GQHSDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTR 163

Query: 189  HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                DR  E   +Q    LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   
Sbjct: 164  T---DRPGEEDFIQEAAKLAAKYNIGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDR 220

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-------I 296
            RPR+ +P+ Y K   EM+ +FSD+P A+ENT +IA+RC+  L++    LP +       I
Sbjct: 221  RPRLYSPEQYFKTSDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTI 280

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            +   + + KE   E R   +  +E R       +    + Y +R+D+E+ +I +M F GY
Sbjct: 281  DTYFEHLSKEGLEE-RLNYLYPVEKRGEDWPEIR----KPYDERIDYEVGIILKMGFPGY 335

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 336  FLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMP 395

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ 
Sbjct: 396  DFDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRIS 455

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPS------VDRLLEISQKLEGLYRHASTHAA 530
            K++P  P       AI  + + ++  + +PS         + E++ KLEG+ R+   HA 
Sbjct: 456  KMVPTKPLGVDLATAIEMEPQLKDI-VTNPSNPDNDDASEIWEMALKLEGITRNTGKHAG 514

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VI    ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + 
Sbjct: 515  GVVIAPGKITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNIN 574

Query: 591  QR---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            +       +++S +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA V
Sbjct: 575  KNRDSNDPLNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFV 634

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            SLYRPGP+D I  + +R +G E    +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L
Sbjct: 635  SLYRPGPMDLIPDFIHRMHGGE-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTL 693

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAA
Sbjct: 694  GGADLLRRAMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAA 753

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA+++Y TAW+K HYP EF+AA M+ EM N + +     D R   ++++PPSVN     
Sbjct: 754  AYALVAYHTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYH 813

Query: 828  FKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESL 885
            F   D++ I Y L AIKGVG    + ++++   + P+  L DFC R+D KK+N+R LE+L
Sbjct: 814  FHASDDKTIVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEAL 873

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFS 944
            + AGALDC G  R  L+  L    + A+    NR +   ++F   E+        ++ +S
Sbjct: 874  IRAGALDCLGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKPAKPVKPWS 933

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             E   VR + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+
Sbjct: 934  DE---VRLKGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVL 988


>gi|262369729|ref|ZP_06063057.1| DNA polymerase subunit III [Acinetobacter johnsonii SH046]
 gi|262315797|gb|EEY96836.1| DNA polymerase subunit III [Acinetobacter johnsonii SH046]
          Length = 1189

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1012 (38%), Positives = 586/1012 (57%), Gaps = 46/1012 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++    A+  PA+AITD +NL +A++F  K    GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRIPDLVKAAKAEGMPALAITDLSNLHAAVKFYGKCLDNGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++  ++                + LL  +  G++ L ELVS  ++  Q      
Sbjct: 63   MGSEVRLNDAEH---------------RVTLLAMSNVGWRNLTELVSEGFIRGQQLDIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-- 188
            +   W+ E   + LI L G  S  + +    ++ Q AE  L  +   FG+R+Y+ L R  
Sbjct: 108  VAKDWILEQNHD-LIALLGMRSD-VGKMLCTSNPQKAEPLLEEWIAKFGNRVYLALCRTE 165

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
              G D +   + ++LA  + + +VA N+  F+ E D+EAH+  + +A   V+    RP+ 
Sbjct: 166  RSGEDDFN-YEALKLAKKYNIGVVAHNDVHFMKEIDFEAHEARVCIADGYVLGDNRRPKD 224

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +P+ Y K+  +M  +F+D+P A+ENT +IA+RC+  LQ+    LP +   E   I    
Sbjct: 225  YSPEQYFKSGQQMAELFADIPSAIENTYQIAKRCNVTLQLGKYFLPDYPIPEGHTI---- 280

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVA 361
            +    + +  GLE RL           Y  +   +Y  RL++E+  I +M F GYFLIV 
Sbjct: 281  DTYFAHLSKEGLEERLDFLYPPETRDEYWPEKRKEYDDRLEYEIGTILKMGFPGYFLIVM 340

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 341  DFIQWSKGNGVPVGPGRGSGAGSLVAYSLKITDLDPLPYGLLFERFLNPERVSMPDFDVD 400

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC   RD VI YV   YG + V+QI TFG++ AK A+RDV R L   Y   DR+ K+IP 
Sbjct: 401  FCIAGRDRVIDYVARTYGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMIPT 460

Query: 482  DPAHPVSLQAIADDSRFRE--ARLADPSVD---RLLEISQKLEGLYRHASTHAAGIVIGD 536
             P      ++I  + + ++     ++P  D    + E++ KLEG+ R+   HA G+VI  
Sbjct: 461  KPLGLSLEESIEAEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVISP 520

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---G 593
              ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +R    
Sbjct: 521  TKITDFSAVLCDADGTGRVAQYDKDDVESAGLVKFDFLGLRNLTVIEDAVKNINKRIQLD 580

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            V +D++ IP DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPG
Sbjct: 581  VPLDIAFIPLDDKDAYLIFANANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPG 640

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  + +R +G E    +HPL++ +L+ T G+++YQEQVMQ AQ  +GYSL  AD+L
Sbjct: 641  PMDLIPDFIHRMHGGE-FEYLHPLLEGVLEPTYGIMVYQEQVMQAAQYCAGYSLGGADLL 699

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM KQ++ F  GA+K  I +  A +IF+ + KFA YGFNKSHAAAYA+++
Sbjct: 700  RRAMGKKKPEEMVKQRQIFTEGAAKKDIDQATANHIFDYMEKFAGYGFNKSHAAAYALVA 759

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTAW+K HYP EFLAA M+ EM N + +     D R  +I+++PPSVN     F   D+
Sbjct: 760  YQTAWLKAHYPAEFLAAVMSSEMQNTDNVVFLIDDCRHNDIEVLPPSVNMSIYQFHASDD 819

Query: 834  R-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + I Y L AIKGVG    + ++++   D P+  L DFC R+D KK+N+R LE+L+ +GAL
Sbjct: 820  KTIVYGLGAIKGVGEAAMQSVIDSRIQDGPYRDLFDFCHRIDLKKINKRTLEALIRSGAL 879

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSV 950
            DC G  R  L+  L    + A     NR     ++F   E+        ++ +S E   V
Sbjct: 880  DCLGIERSSLMAQLPEAVQAADQARSNRETGIMDLFGEVEEVQRKPAKPVKPWSDE---V 936

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            R + E+  LG Y +GHP+DVY+  L+        E   T RG     A +VV
Sbjct: 937  RLKGEKDTLGLYLTGHPIDVYRTELKAFIPNKINELTPTRRGVTTVFAGLVV 988


>gi|169796248|ref|YP_001714041.1| DNA polymerase III, alpha chain [Acinetobacter baumannii AYE]
 gi|184157823|ref|YP_001846162.1| DNA polymerase III subunit alpha [Acinetobacter baumannii ACICU]
 gi|213157018|ref|YP_002319063.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB0057]
 gi|215483703|ref|YP_002325924.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB307-0294]
 gi|294838019|ref|ZP_06782702.1| DNA polymerase III DnaE [Acinetobacter sp. 6013113]
 gi|294843569|ref|ZP_06788252.1| DNA polymerase III DnaE [Acinetobacter sp. 6014059]
 gi|294859019|ref|ZP_06796788.1| DNA polymerase III DnaE [Acinetobacter sp. 6013150]
 gi|301347827|ref|ZP_07228568.1| DNA polymerase III DnaE [Acinetobacter baumannii AB056]
 gi|301511111|ref|ZP_07236348.1| DNA polymerase III DnaE [Acinetobacter baumannii AB058]
 gi|301595112|ref|ZP_07240120.1| DNA polymerase III DnaE [Acinetobacter baumannii AB059]
 gi|169149175|emb|CAM87054.1| DNA polymerase III, alpha chain [Acinetobacter baumannii AYE]
 gi|183209417|gb|ACC56815.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii ACICU]
 gi|213056178|gb|ACJ41080.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB0057]
 gi|213988216|gb|ACJ58515.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB307-0294]
 gi|322508138|gb|ADX03592.1| DNA polymerase III, alpha chain [Acinetobacter baumannii 1656-2]
 gi|323517712|gb|ADX92093.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii
            TCDC-AB0715]
          Length = 1187

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/1018 (38%), Positives = 595/1018 (58%), Gaps = 58/1018 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + +++     D+ PA+A+TD +NL +A++F       GI+PI
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + ++   +                  LL  +  G++ L E+VSR ++  +G+Q   
Sbjct: 63   LGSTIRLNDAQH---------------RATLLAMSDIGWKGLTEIVSRGFI--EGQQLSI 105

Query: 131  ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             C+   W+ E   + +++L  G    + +    ++ Q AE  L  + + FG+R+Y+ L R
Sbjct: 106  PCVQKEWVLEQHQDIIVLL--GQHSDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTR 163

Query: 189  HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                DR  E   +Q    LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   
Sbjct: 164  T---DRPGEEDFIQEAAKLAAKYNVGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDR 220

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-------I 296
            RPR+ +P+ Y K   EM+ +FSD+P A+ENT +IA+RC+  L++    LP +       I
Sbjct: 221  RPRLYSPEQYFKTSDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTI 280

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            +   + + KE   E R   +  +E R       +    + Y +R+D+E+ +I +M F GY
Sbjct: 281  DTYFEHLSKEGLEE-RLNYLYPVEKRGEDWPEIR----KPYDERIDYEVGIILKMGFPGY 335

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 336  FLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMP 395

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ 
Sbjct: 396  DFDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRIS 455

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPS------VDRLLEISQKLEGLYRHASTHAA 530
            K++P  P       AI  + + ++  + +PS         + E++ KLEG+ R+   HA 
Sbjct: 456  KMVPTKPLGVDLATAIEMEPQLKDI-VTNPSNPDNDDASEIWEMALKLEGITRNTGKHAG 514

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VI    ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + 
Sbjct: 515  GVVIAPGKITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNIN 574

Query: 591  QR---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            +       +++S +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA V
Sbjct: 575  KNRDSNDPLNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFV 634

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            SLYRPGP+D I  + +R +G E    +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L
Sbjct: 635  SLYRPGPMDLIPDFIHRMHGGE-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTL 693

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAA
Sbjct: 694  GGADLLRRAMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAA 753

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA+++Y TAW+K HYP EF+AA M+ EM N + +     D R   ++++PPSVN     
Sbjct: 754  AYALVAYHTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYH 813

Query: 828  FKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESL 885
            F   D++ I Y L AIKGVG    + ++++   + P+  L DFC R+D KK+N+R LE+L
Sbjct: 814  FHASDDKTIVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEAL 873

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFS 944
            + AGALDC G  R  L+  L    + A+    NR +   ++F   E+        ++ +S
Sbjct: 874  IRAGALDCLGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKPAKPVKPWS 933

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             E   VR + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+
Sbjct: 934  DE---VRLKGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVL 988


>gi|51598831|ref|YP_073019.1| DNA polymerase III subunit alpha [Borrelia garinii PBi]
 gi|51573402|gb|AAU07427.1| DNA polymerase III, subunit alpha [Borrelia garinii PBi]
          Length = 1147

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/1014 (40%), Positives = 617/1014 (60%), Gaps = 32/1014 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  AGI+PI
Sbjct: 7    FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 66

Query: 71   IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IG +  +        K  + GK  +     ++LL     GY+ L++L S  YL +     
Sbjct: 67   IGIEAYMAKTSKFFKKHDDLGKMSY----HLILLAKNEIGYKNLLKLTSISYL-EGFYYR 121

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+ LQR
Sbjct: 122  PRIDKEDLEKY-SEGLICTSACIGGLIPRLILGNRFEDAKNEILWFKKVFGNDFYLELQR 180

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S ++R +
Sbjct: 181  HGIKDQDIVNERLVEYSRELGVPLTAANDSHYVNREDAIAQDIIVCIGTGAKKSDENRLK 240

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECDDIQ 304
            + T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E + + 
Sbjct: 241  METNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIEFNTLG 300

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +     L    + GL+ R               + R  +EL+VI RM F GYFLIV DFI
Sbjct: 301  EY----LEYLTLEGLKFRYKT-------LTSKIKDRAFYELSVIIRMGFEGYFLIVWDFI 349

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDIDFC 
Sbjct: 350  KFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDIDFCF 409

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L KLIP+ P 
Sbjct: 410  EGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKLIPDGPK 469

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              VSL+ + DD+  +E   + P    L++ +  LEG+ RHASTHAAGIVI   PL+  VP
Sbjct: 470  --VSLKEVLDDNSLKEYFTSKPVYKELMDAALVLEGMNRHASTHAAGIVISKTPLTDYVP 527

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IP 602
            +Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +  R V  D  +  IP
Sbjct: 528  LYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIKNIP 585

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D +T+ +L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  + 
Sbjct: 586  DNDVKTFKMLGEGKSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQFI 645

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K G + I   HP +  +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK +
Sbjct: 646  AAKKGVKSIKYPHPDLKEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKKE 705

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            +EMD+ K  F+ GA + G  K +A  IFELL  F+ YGFNKSHAAAY++I+YQTA++K +
Sbjct: 706  DEMDEMKVDFLRGAIEKGYDKEVASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLKAN 765

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L AI
Sbjct: 766  YPQYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFKEFRVTDSGISYGLNAI 825

Query: 843  KGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K +G      I+ E   +  + S E+F  RVD K +N++ LES + +G  D    +R  L
Sbjct: 826  KNLGEIVVDLIIDEREKNGKYSSFENFIRRVDDKVINKKFLESAIKSGLFDSLDQNRKTL 885

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT--FSDKITLEKFSVENSSVRFENEQRVL 959
             ++LD + +     + N+     ++F   KG          + F   + S   E E+ +L
Sbjct: 886  FENLDRLIEVVSEDKNNKKLGQNSLFDVLKGQNPIHQNFNYQAFKEYSYSELLEFEKELL 945

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            GFY SGHPLD YK  +         + +AT + + ++ + ++ S +  +T++ +
Sbjct: 946  GFYVSGHPLDPYKKAINSFSSLNVLKDLATKKDSIVQFSGILNSVKVIQTKRNN 999


>gi|239504052|ref|ZP_04663362.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB900]
          Length = 1187

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/1018 (38%), Positives = 594/1018 (58%), Gaps = 58/1018 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + +++     D+ PA+A+TD +NL +A++F       GI+PI
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + ++   +                  LL  +  G++ L E+VSR ++  +G+Q   
Sbjct: 63   LGSTIRLNDAQH---------------RATLLAMSDIGWKGLTEIVSRGFI--EGQQLSI 105

Query: 131  ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             C+   W+ E   + +++L  G    + +    ++ Q AE  L  + + FG+R+Y+ L R
Sbjct: 106  PCVQKEWVLEQHQDIIVLL--GQHSDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTR 163

Query: 189  HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                DR  E   +Q    LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   
Sbjct: 164  T---DRPGEEDFIQEAAKLAAKYNIGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDR 220

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-------I 296
            RPR+ +P+ Y K   EM+ +FSD+P A+ENT +IA+RC+  L++    LP +       I
Sbjct: 221  RPRLYSPEQYFKTSDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTI 280

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            +   + + KE   E R   +  +E R       +    + Y +R+D+E+ +I +M F GY
Sbjct: 281  DTYFEHLSKEGLEE-RLNYLYPVEKRGEDWPEIR----KPYDERIDYEVGIILKMGFPGY 335

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 336  FLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMP 395

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ 
Sbjct: 396  DFDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRIS 455

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPS------VDRLLEISQKLEGLYRHASTHAA 530
            K++P  P       AI  + + ++  + +PS         + E++ KLEG+ R+   HA 
Sbjct: 456  KMVPTKPLGVDLATAIEMEPQLKDI-VTNPSNPDNDDASEIWEMALKLEGITRNTGKHAG 514

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VI    ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + 
Sbjct: 515  GVVIAPGKITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNIN 574

Query: 591  QR---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            +       +++S +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA V
Sbjct: 575  KNRDSNDPLNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFV 634

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            SLYRPGP+D I  + +R +G E    +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L
Sbjct: 635  SLYRPGPMDLIPDFIHRMHGGE-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTL 693

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAA
Sbjct: 694  GGADLLRRAMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAA 753

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA+++Y TAW+K HYP EF+AA M+ EM N + +     D R   + ++PPSVN     
Sbjct: 754  AYALVAYHTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLDVLPPSVNMSTYH 813

Query: 828  FKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESL 885
            F   D++ I Y L AIKGVG    + ++++   + P+  L DFC R+D KK+N+R LE+L
Sbjct: 814  FHASDDKTIVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEAL 873

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFS 944
            + AGALDC G  R  L+  L    + A+    NR +   ++F   E+        ++ +S
Sbjct: 874  IRAGALDCLGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKPAKPVKPWS 933

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             E   VR + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+
Sbjct: 934  DE---VRLKGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVL 988


>gi|118475097|ref|YP_892396.1| DNA polymerase III subunit alpha [Campylobacter fetus subsp. fetus
            82-40]
 gi|118414323|gb|ABK82743.1| DNA polymerase III alpha subunit [Campylobacter fetus subsp. fetus
            82-40]
          Length = 1331

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/1024 (39%), Positives = 604/1024 (58%), Gaps = 78/1024 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  +  +  ++      + AITD  N++ AL+F +   A GI+PI
Sbjct: 4    FTHLHLHTEYSLLDGANKIKVLAKRLKELNIKSCAITDHGNMYGALDFYKTMKAEGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  I   +++    + +  F     + L      GYQ L+ L S  Y+        R
Sbjct: 64   IGLEAYIHNHEDIS-NKESRQRF----HLCLFAKNEVGYQNLMYLSSMSYIKGYYYHP-R 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-----------QVAEKRLLTFKKLFG 179
            I    L+E  +EGL+  +   +G ++  F  N S           + A++  L +K +FG
Sbjct: 118  INKKLLRE-HSEGLVCSSACLAGEVN--FHLNLSDRNLKRGAGGYESAKRVALEYKDIFG 174

Query: 180  DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            D  Y+ + RH   D+ R +  +++L+    + L+ATN++ + +++   A  + + ++ + 
Sbjct: 175  DDFYLEIMRHGIGDQQRIDDDIIRLSMETGIKLIATNDAHYTTKDSAVAQKIFVYISANK 234

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
                K R +V  + Y K+  EM +IF+D+PE +ENT EI  +C+  +++     P F   
Sbjct: 235  NFDDKVREQVLSEFYAKSADEMSAIFADMPEVIENTNEIVEKCNLEIKLGDATPPNFKFT 294

Query: 296  --IEKECDDIQKEEENE--LRNKAV-------AGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                KE   I    +NE  L N +         GLE RL    I    H Q Y+ RLD E
Sbjct: 295  QEYAKERGIILPHPQNEYDLENDSFLFEYECKQGLEKRLE--FIDPSKH-QIYKDRLDLE 351

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N I  MKF GY LIVADFI  AK+  IPVGPGRGS AGS+ AYAL ITDIDPL ++LLF
Sbjct: 352  INTINNMKFPGYMLIVADFINEAKRRGIPVGPGRGSAAGSLVAYALRITDIDPLPYNLLF 411

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQ+RR EVI YV  KYG   VAQ+ TFG L AK  +RDV R 
Sbjct: 412  ERFLNPERISMPDIDVDFCQNRRGEVIDYVIEKYGEYNVAQVATFGKLLAKGVIRDVARV 471

Query: 465  LQMPYSQVDRLCKLIPND-----PAHPVSLQAIADDSRFREARLAD-----PSVDRLLEI 514
            + MPYS+ D + KLIP++      AH      + D +  +E ++ +         ++ E 
Sbjct: 472  MGMPYSEADAMAKLIPDELGITLKAHKNKKGDMEDGAFEKEPKIGELIAKNDLAKQVWEY 531

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFD 572
            S +LEGL R+   HAAGIVI +  L +  P+++   ++    VTQ+   ++E   LIKFD
Sbjct: 532  SCELEGLNRNPGMHAAGIVISNEELWKKAPLWKQSNAEAGHYVTQYTKDYLEDVDLIKFD 591

Query: 573  FLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +   + +R GV +    I F+D +TY  + +  TLGIFQ+ESSGM+  
Sbjct: 592  FLGLKTLTVIDNAKKLIKERFGVDILWEKIDFNDQKTYETIQSGNTLGIFQIESSGMQSL 651

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
               ++PDC EDIIA+++LYRPGP+++ +V  + + K+GK+KI      + P+L+ T GVI
Sbjct: 652  AAKLRPDCFEDIIAMIALYRPGPLNSGMVDDFIDIKHGKKKIEYAFAALKPILEPTYGVI 711

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQ+ Q + G+SL  AD++RRAM KK ++EM   K +++ GA +NG  +  A  +
Sbjct: 712  VYQEQVMQVVQTVGGFSLGGADLVRRAMSKKKEDEMLHLKTQYLEGAKRNGFDEGKADAL 771

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            FEL+ KFA+YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +N++KI K+  + 
Sbjct: 772  FELIMKFAEYGFNKSHSAAYALITFQTAYLKTYYPAEFMAALLTSEENNIDKIIKYIDEI 831

Query: 810  RQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
            ++ NI+++PP+VN    +F V    G + I Y +AAIKGVG      I++A  D PF+S+
Sbjct: 832  KRLNIKLLPPNVNYSVREFSVIQKDGSDSIIYGMAAIKGVGVGAVEDIIKAREDGPFESV 891

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI---QKYAQWVEKNRTNK 922
            + F S+ D   +NRRV ESL+ +GA D FG++R  L+ +L+ I    K    ++KN TN 
Sbjct: 892  DSFISKTDCTTVNRRVFESLIKSGAFDDFGFTRKMLIHNLETIIENSKRISDIKKNATN- 950

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFE--------NEQRVLGFYFSGHPLDVYKPI 974
                       FSD  ++ + SV+  +++ E         EQ +LG Y SGHPLD Y+  
Sbjct: 951  ---------SLFSDDDSMSEISVDLVNIKDEFDKKEILKFEQEILGVYVSGHPLDEYRDK 1001

Query: 975  LRKM 978
            + K+
Sbjct: 1002 IDKI 1005


>gi|255657970|ref|ZP_05403379.1| DNA polymerase III, alpha subunit [Mitsuokella multacida DSM 20544]
 gi|260850171|gb|EEX70178.1| DNA polymerase III, alpha subunit [Mitsuokella multacida DSM 20544]
          Length = 1128

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/1030 (37%), Positives = 607/1030 (58%), Gaps = 26/1030 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ +SLL+GA  +  +++   A    +IAITD   ++  ++F ++A   G++PI
Sbjct: 3    FTHLHVHTEFSLLDGASRIKELIETTKALGMDSIAITDHGAMYGVIDFYKEAKKQGVKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +      +        +     ++LL     GY+ L++LVS +  ++      R
Sbjct: 63   IGCEVYVAPGARQEHREVNGVRYY---HLILLAENQTGYRNLVKLVS-LANVEGMYYKPR 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +    L++   EG+I L+   +G I RA   ++ + A+  +  + ++FG +  ++ +Q H
Sbjct: 119  VDKDLLRQY-HEGIICLSACIAGEIPRAILQDNMERADALVREYLEIFGRENFFLEIQNH 177

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
                +R   + +V+LA  +++ LVATN+  ++  ED E HD+L+ +  +      DR R 
Sbjct: 178  GLPEERKANAGLVELAKKYDVGLVATNDLHYVHREDSEFHDILLCIQMNKTFDDPDRMRF 237

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + D+YLK+  EM ++F DLPEA+ NT +IA RC    +     LP +          ++
Sbjct: 238  ASDDYYLKSPEEMAALFPDLPEAIANTEKIAARCKVDFEFGHLQLPYY---PIPAPYADD 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E  LR+     L  R A          +  R+RL++EL +I RM +  YFLIV DFI ++
Sbjct: 295  EAYLRHLCEENLPRRYATVT-------EKIRERLEYELGIIHRMGYDSYFLIVWDFINYS 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +++ I VGPGRGS AGS+ AY L IT++DPL++ LLFERFLNP+R++MPD D+DF   +R
Sbjct: 348  REHGIGVGPGRGSAAGSIVAYLLGITNLDPLKYDLLFERFLNPERVTMPDIDVDFDYIQR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +VI YV+ +YG++ VAQI+TFG++ AK A+RDVGR L +PY++V  + KL+PN+    +
Sbjct: 408  GKVIDYVKERYGYDHVAQIVTFGTMAAKGAIRDVGRVLNLPYAEVAEIAKLVPNELKITL 467

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+ + + FR+A  +   V RL+++++K+EGL RH+STHAAG+VI   PL+  VP+  
Sbjct: 468  D-KAMQESADFRKAYESSEDVHRLIDLARKIEGLPRHSSTHAAGVVIARHPLTDYVPV-- 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDH 606
             +     VT+++   +E+ GL+K DFLGL+TLT++  ++ +    R  KVD+  IP  D 
Sbjct: 525  SISEGTLVTEYDKDHVEELGLLKMDFLGLRTLTVISDTIANIEKSRHEKVDIDKIPLTDG 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
             T  +L    T  +FQ+ES+GM Q +  + P+   D+I LV+LYRPGP+ + +V  +   
Sbjct: 585  LTSKMLCEGKTGAVFQMESAGMTQLVRDLAPENFADLIPLVALYRPGPLGSGMVEDFIKG 644

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++G++++  +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK  E 
Sbjct: 645  RHGEKEVTYMHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKKKHEI 704

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +  QKE F+ G  KN I   +A  IF+LL  FADYGFNKSH+AAYA++++QTA++K HYP
Sbjct: 705  LMAQKENFLDGCEKNHIDAGLANTIFDLLTHFADYGFNKSHSAAYALVAWQTAYLKAHYP 764

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF+AA +T  MD   K+  + +  R+  I+I+PP +N     F V  + I + LAA++ 
Sbjct: 765  AEFMAAMLTSIMDT-PKVSTYIELCRRMGIKILPPDINASSAYFSVDGDAIRFGLAAVRN 823

Query: 845  VGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG T   ++        PF SL DFC RVD + +NRRV+ESL+  GA D FG  R QLL 
Sbjct: 824  VGETAIENVARIRETGGPFSSLSDFCRRVDMRVVNRRVIESLIKCGAFDSFGAKRSQLLA 883

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L      A   +K+  +    +F+ E    +  + L        + R   E+   GFY 
Sbjct: 884  VLPQTVMEAAQQQKDAVSGQMGLFSDETIEETGMLQLPDIDEVPKAERLRWEKEATGFYI 943

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            +GHPLD Y   L  +   G  +         +R+  M+   ++  T+KG  + + T  + 
Sbjct: 944  TGHPLDQYAAKLENLPRIGSLQPDTVRDKQVVRIGGMLTEAKRITTKKGDTMCFATVEDF 1003

Query: 1024 AKEYEANFFP 1033
                E   FP
Sbjct: 1004 TDSIEVTVFP 1013


>gi|164686689|ref|ZP_02210717.1| hypothetical protein CLOBAR_00284 [Clostridium bartlettii DSM 16795]
 gi|164604079|gb|EDQ97544.1| hypothetical protein CLOBAR_00284 [Clostridium bartlettii DSM 16795]
          Length = 1178

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1064 (36%), Positives = 611/1064 (57%), Gaps = 60/1064 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  F HL VH+ YSLL+G   +  ++ +       ++AITD  N+F  ++F ++A   GI
Sbjct: 2    SSEFAHLHVHTEYSLLDGFSRVKKLIKRTKELGMKSVAITDHGNMFGVIDFYKEAKKQGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +P+IGC+L    +    +T++          ++LL     GYQ LI+LVS  Y+ D    
Sbjct: 62   KPVIGCELYTAQR---SLTDKDPNFDKRYGHLILLAENMTGYQNLIKLVSISYV-DGFYY 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNL 186
              R+ +  L+E  +EG+I L+   +G +  A    + + A++  LT+ ++FG    Y+ L
Sbjct: 118  KPRVDIEALRE-HSEGIICLSACLAGDVSNALMNRNYEKAKEIALTYNEIFGQGNFYLEL 176

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++    + +V+L+    +PLVATN+  ++ + D +AHDVL+ +     ++   R
Sbjct: 177  QDHNLPEQKEVNASLVKLSKELNIPLVATNDIHYVDKADSKAHDVLLCIQMGKTLNDPAR 236

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R  T + YLK+R EM  +F    EAL+NT +IA RC+     +   LP +   E     
Sbjct: 237  MRFGTEEFYLKSREEMEELFPYALEALDNTAKIAERCNVEFDFNTIHLPNYEVPE----- 291

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                        +G    L    + + Y   +Q+   RL +EL VI +M +  YFLI  D
Sbjct: 292  --------GYTTSGYLEELCYKGLYERYENPSQEILDRLKYELGVINKMGYVEYFLITWD 343

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI +AK+N I VGPGRGS AGS+ AY L ITDIDP++++LLFERFLNP+R+SMPD DIDF
Sbjct: 344  FINFAKENGIMVGPGRGSAAGSIVAYTLKITDIDPIKYNLLFERFLNPERVSMPDIDIDF 403

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR+EVI YV+ KYG + VAQIITFG++ AK A+RDVGR L +PY++VD++ K IPN 
Sbjct: 404  CYERREEVIDYVKRKYGEDHVAQIITFGTMGAKLAIRDVGRVLDIPYNKVDKIAKEIPNA 463

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+  +   +     D     ++ IS++LEG+ RHASTHAAG+VI   P+ + 
Sbjct: 464  LGMTID-KALETNPNLKSLYEQDQETKTIINISKELEGMLRHASTHAAGVVISKNPIDEY 522

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+Y+    D   TQF M  +E+ GL+K DFLGL+TLT+++ +LD + +  G K+D S +
Sbjct: 523  VPLYK--HQDAISTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIEKNHGRKIDFSKM 580

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +DD + + LL++  TLG+FQ+ES+GMR  ++ ++P   EDI+A +SLYRPGP+D+I  Y
Sbjct: 581  DYDDPKVFELLSSGNTLGVFQMESAGMRSFMKQLKPSNFEDIVAGISLYRPGPMDSIPTY 640

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K+  EKI  IH  + P+++ T G +IYQEQVM++ + L GYS   +D++RRAMGKK 
Sbjct: 641  LEYKHNPEKITYIHEKLKPIMEVTYGCLIYQEQVMEVVRELGGYSYGRSDLVRRAMGKKK 700

Query: 722  KEEMDKQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             + M+++++ FI G +            +NG+ +  A  IF+ +  FA Y FNKSHAAAY
Sbjct: 701  MDVMEEERQYFIHGKTDENGNIEIAGCVRNGVDEQTANKIFDDMIDFAKYAFNKSHAAAY 760

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
             VI+Y+TA++K HYPVEF+AA +T  M N +K+ ++ ++    NI+++ P +N     F 
Sbjct: 761  GVIAYETAYLKAHYPVEFMAALITSVMGNTDKVVEYIRECNALNIKVLKPDINKSFAKFS 820

Query: 830  VGDNRIYYSLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V DN I + LAA+K VG     +I +E   +  F    +   R+DSK +N+RV+ESL+  
Sbjct: 821  VEDNNIRFGLAAVKNVGVNIINNIVIEREQNGEFTDFINLIKRLDSKDINKRVIESLIKC 880

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            G  D  GY+R  L+   + + +      K       ++F    G   ++  +++F    +
Sbjct: 881  GGFDEMGYNRASLMMGYEKVLESVSLERKKNIKGQISLFDGLDGLGQNE-EIDRFENSTT 939

Query: 949  SV----RFEN------EQRVLGFYFSGHPLDVYKPIL--------RKMG-IKGYEESVAT 989
            S+     FE       E+ VLG Y SGHPL  Y+  L        +K+  +K   +    
Sbjct: 940  SIASIQEFEEREKLALEKEVLGMYVSGHPLSEYEKELETRTSLNTKKLNEVKENLDKYLA 999

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +   N+ +  M+ +K+ + T++   + ++   +     E   FP
Sbjct: 1000 MDQENVIIGGMISNKRIQTTKRNEIMAFLEVEDLYGSIEVIVFP 1043


>gi|303228475|ref|ZP_07315306.1| putative DNA polymerase III subunit alpha [Veillonella atypica
            ACS-134-V-Col7a]
 gi|302516833|gb|EFL58744.1| putative DNA polymerase III subunit alpha [Veillonella atypica
            ACS-134-V-Col7a]
          Length = 1135

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/1032 (38%), Positives = 619/1032 (59%), Gaps = 29/1032 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +SLL+G   L +++ +    +QPA+AITD  N+++A+ F ++  A GI+PI
Sbjct: 4    FVHLHSHTEFSLLDGISRLPDMVRRAKELEQPALAITDHGNMYAAIYFYKECVAQGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +     L    +G++    +  ++LL  T EGY+ L+++VS+    +      R
Sbjct: 64   IGCEVYVTEGSRLDKP-EGRSR-ERLKHLILLAETMEGYRNLVKIVSKAST-EGFNYKPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L++  ++G+I L+    G + +    ++   A + +  + + FG D  ++ +Q H
Sbjct: 121  ADHDLLRQY-SKGIIALSACIQGEVPQYILQDNMDGARRAVEWYIETFGKDNFFLEIQNH 179

Query: 190  RGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +  R  QV+ QLA  + L +VA+N+  ++ ++D +A D+ + +      ++ DR + 
Sbjct: 180  GLPEELRAQQVLCQLADEYGLGIVASNDFHYVMKDDADAQDIRVCIQTGRRRAEVDRLKF 239

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +F  +P ALENTV+IA RC+         LP F      D+ + E
Sbjct: 240  PNDEFYLKSGDEMAELFGHIPGALENTVKIADRCNVEFNFDEHHLPHF------DVPEGE 293

Query: 308  ENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++   + V   E+ RL       G  +++ ++RLD+EL+VI  M F  YFLIV D++++
Sbjct: 294  TSKTYLRKVCEREIPRLY------GDTSEELKKRLDYELDVIGTMGFEDYFLIVWDYVRY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++
Sbjct: 348  AREHDILVGPGRGSAAGSVVAYLLGITGLDPLQYDLLFERFLNPERVSMPDIDIDFCYEK 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E I YV  KYG  RV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+    
Sbjct: 408  RGEAIDYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELG-- 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            ++L+        +     DP+V  L +  QKLEG+ R++STHAAG+VI   PL   VP+ 
Sbjct: 466  ITLEKALKGKDLKALYDTDPNVKELFDFGQKLEGIARNSSTHAAGVVISADPLDDHVPV- 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
            ++   +  VTQ++   IE+ GL+K DFLGL+TLT++  +L  + A RG+ +DL  IP DD
Sbjct: 525  QNSNEEGFVTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
                 LLT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +V  + +
Sbjct: 585  KAACELLTKGDTSGVFQLESDGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFID 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK + 
Sbjct: 645  RRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKES 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  Q+E FI G+  NGI ++IA  +F+LL  FA YGFNKSH+AAYA I+YQTA++K HY
Sbjct: 705  VLKAQRESFIQGSINNGIEESIANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKVHY 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              EF+AA+MT  M N++K+  +    ++ N+Q++ P VN     F V  + I + L  IK
Sbjct: 765  FPEFMAATMTSFMQNMDKLTYYINACKKHNVQVLGPDVNHSLRSFAVQGDAIRFGLGGIK 824

Query: 844  GVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG     R I E  A+  + S+ DFC RVDSK +N+R+LESL+  GA+D F  +R QLL
Sbjct: 825  NVGDNAIDRLIAEREANGLYTSITDFCRRVDSKVVNKRLLESLIRCGAMDGFEENRNQLL 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
               ++ Q      +K+      ++F  E     D I +      +   + ++E+   GFY
Sbjct: 885  HMYESAQAVGAKQQKDAAMGTMSLFG-ESTDDVDMIPVPNLPDLSEDDKLKDEKDYTGFY 943

Query: 963  FSGHPLDVYKPILRKMGIKG-YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             +GHPL  Y   L+ +   G   E+     G  I    ++  +  + T++G  +  +   
Sbjct: 944  ITGHPLQGYNKELKGLFELGQLLENPERFDGQTITFGGLIAERGDRPTKRGDVMSILRIE 1003

Query: 1022 EPAKEYEANFFP 1033
            + +   +   FP
Sbjct: 1004 DYSGSAQVVAFP 1015


>gi|308174617|ref|YP_003921322.1| DNA polymerase III subunit alpha [Bacillus amyloliquefaciens DSM 7]
 gi|307607481|emb|CBI43852.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens DSM 7]
          Length = 1115

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/1035 (38%), Positives = 617/1035 (59%), Gaps = 56/1035 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQV S YSLL  A S+  I+ +       ++A+TD N ++ A+EF +   + GI+P
Sbjct: 5    SFVHLQVRSGYSLLNSAASVKEIVTQAKELGYSSLALTDENVMYGAIEFYKACKSHGIKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    I   +         T     P +VLL  T  GYQ L+++ S +  + +G    
Sbjct: 65   IIGLTASIYTDE---------TELEARP-LVLLAETNTGYQNLLKISSALQSIAKGGMKR 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAF----FFNSSQVAEKRLLTFKKLFGD-RLYV 184
            +    W++    EGLI +T G +G I+       F  + +VAE     F++LFG+ R Y+
Sbjct: 115  K----WMKSY-HEGLIAITPGENGYIESLLQAGEFEEAVRVAE----GFRELFGEGRFYL 165

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
              Q  +G++   E ++++L+   E+ + A  +  ++ +ED +A+  L A+        +D
Sbjct: 166  GYQPFKGHETLSE-EILRLSAETEIAVCAAGDVRYIKKEDQDAYRCLCAIKAGE--KWED 222

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF---ILQVHAPILPRFIEKECD 301
            +    PD YL+   EM +I+   PEA++    +A++C     + Q   P  P    K  D
Sbjct: 223  QSGDLPDLYLRPPEEMENIYMKNPEAVKAAARVAQQCQVDVSLGQTQLPSFPAPDGKSAD 282

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D   E  +E       GL +R        G   +   +RL++EL+VI RMKFS YFLIV 
Sbjct: 283  DYLAEVCHE-------GLRLRF-------GTPDERAVRRLEYELDVIRRMKFSDYFLIVW 328

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF+++A +  I  GPGRGS AGS+ AY+L ITD+DPL+ SLLFERFLNP+R+SMPD DID
Sbjct: 329  DFMKYAHEKGIVTGPGRGSAAGSLVAYSLFITDVDPLKHSLLFERFLNPERISMPDIDID 388

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F   RRDEVI+YVQNKYG   VAQIITFG+L AKAALRD GR   +   + D+L +LIP+
Sbjct: 389  FPDTRRDEVIQYVQNKYGSMHVAQIITFGTLAAKAALRDTGRVFGISPKEADQLARLIPS 448

Query: 482  DPAHPVSLQAIADDSRFREARLADPSV-DRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   ++L+     S     RL++ +V  ++ +I++K+EGL RH STHAAG+V+   PLS
Sbjct: 449  KPG--MTLEEARRQSAQLNRRLSESAVLHKVFQIARKIEGLPRHTSTHAAGVVLSKEPLS 506

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599
            ++VP+ ++    + +TQ+ M  +E  GL+K DFLGL+ LTL++     + +    K+D S
Sbjct: 507  EVVPL-QEGHDGVYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESIKTMIEKETNTKIDFS 565

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I + D +T+ LL+   T GIFQLESSGMR  L+ ++P  +EDI+A+ +LYRPGP++NI 
Sbjct: 566  EISYQDEKTFSLLSNGDTTGIFQLESSGMRNVLKRLKPSRLEDIVAVNALYRPGPMENIP 625

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            ++ +RK+G+ ++   H  +  +L +T GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ K
Sbjct: 626  LFIDRKHGRARVEVPHEDVRNILSDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSK 685

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D+++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I YQ A++
Sbjct: 686  KQKDILDRERSHFVEGCLKKEYSVVTANEVYDLIVKFANYGFNRSHAVAYSMIGYQLAYL 745

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYP+ F+   +T  + N +KI ++  +A+   +Q++PPSVN     F   +  + YSL
Sbjct: 746  KAHYPLYFMCGLLTSVIGNEDKISQYLHEAKGSGLQVLPPSVNKSGFPFAPENGAVRYSL 805

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             AIK VG +  + I +A   KPF+ L DFC RV +K +NR+ +E+L+F+GA+D F  +R 
Sbjct: 806  RAIKNVGVSAVKDIYKARTHKPFEDLFDFCFRVPAKSVNRKTIEALIFSGAMDEFNQNRA 865

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-ITLEKFSVENSSVRFENEQRV 958
             LL S+D   ++A+    +  +    +F  E  +   K +  E+F + +  +RFE E   
Sbjct: 866  ALLASVDVALEHAELFRAD--DDQMGLFLEESFSIKPKYVEAEEFPLVD-KLRFEKE--A 920

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG YFS HPL  ++ +L+K G +    ++   +G  + + A++   +  +T+ G  + ++
Sbjct: 921  LGVYFSSHPLSAFRNLLKKRGAQAIATALQMPKG-QLSIGALLAGIKTIRTKTGQHMAFL 979

Query: 1019 TFSEPAKEYEANFFP 1033
            T S+   E EA  FP
Sbjct: 980  TLSDETGEMEAVVFP 994


>gi|123968448|ref|YP_001009306.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str.
            AS9601]
 gi|123198558|gb|ABM70199.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str.
            AS9601]
          Length = 1165

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/1057 (37%), Positives = 630/1057 (59%), Gaps = 54/1057 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  ++ I+++       +IA+TD   ++  L+  +K    GI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQISKIVERACDLGMDSIALTDHGVMYGVLDLVKKCKEKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IIG ++ +       +      P P       +V+L     GY+ L++L +  +L     
Sbjct: 62   IIGNEMYV-------INGSIDDPQPKKEKRYHLVVLAKNYTGYKNLVKLTTISHLNGMRG 114

Query: 127  QSV--RICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            + +  R C+  S L +  ++GLI+ T    G I +A       VAE   L +KKLF D  
Sbjct: 115  RGIFSRPCIDKSLLSKY-SDGLIVSTACLGGEIPQAILKGRLDVAEDIALWYKKLFADDF 173

Query: 183  YVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +Q H    DR    +++++   H++ ++ATN++ +LS  D EAHD L+ V    ++S
Sbjct: 174  YLEIQDHGSIEDRIVNVELIKIGKKHQIKVIATNDAHYLSSMDVEAHDALLCVLTGKLIS 233

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRF 295
             + R R T   Y+K+ +EM+ +F D      + +A+ NTVEI+++           +P+F
Sbjct: 234  DEKRLRYTGTEYIKSENEMLELFKDHIDDKSIIDAVNNTVEISQKVEVFDLFGNYRMPKF 293

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
               E     K+  + L+  +  GL  RL +  + +    + Y++RL  EL +I  M F  
Sbjct: 294  PLNE----DKDSFSFLKQLSNKGLLKRLKKNDLDE--VDEKYKERLTSELKIIKDMGFPD 347

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+V D+I++A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP R SM
Sbjct: 348  YFLVVWDYIKFARDNSIPVGPGRGSAAGSLVAYALQITNIDPVEHGLLFERFLNPARKSM 407

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D DFC DRR+EVI YV N+YG ++VAQIITF  + +KA L+DV R L +PY + D+L
Sbjct: 408  PDIDTDFCIDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADKL 467

Query: 476  CKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             KLIP     P  L  + D +     FR+  + D  + + ++++ ++EG  +    HAAG
Sbjct: 468  AKLIPVVRGKPYKLNEMIDKNSPSQEFRDKYINDNRIKKWVDLALRIEGTNKTYGVHAAG 527

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI   PL +LVP+ R+    + +TQ++M  IE  GL+K DFLGLK LT+++K++  + Q
Sbjct: 528  VVIASDPLDELVPLQRNNEGQI-ITQYSMDDIESLGLLKMDFLGLKNLTMIEKTVSLVNQ 586

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              G K+++  +P +D +T+ L+      GIFQLESSGM+Q ++  +P+ +EDI ++++LY
Sbjct: 587  SSGKKINIDELPRNDSKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALY 646

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+D  ++  + NRKNG EKI   HP I  +L ET G+++YQEQ+M+IAQ L+GYSL 
Sbjct: 647  RPGPLDAGLIPKFINRKNGNEKIDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSLG 706

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            +AD+LRRAMGKK   EM K +  F+ G+ K G+++ +A ++F+ +  FA+Y FNKSH+ A
Sbjct: 707  DADLLRRAMGKKKVSEMVKHRNIFVEGSMKKGVNEKLANDLFDQMVLFAEYCFNKSHSTA 766

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y  ++YQTA++K H+PV ++AA +++   + +K++++  +     I+++ PS+N   VDF
Sbjct: 767  YGAVTYQTAFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMGIEVISPSINFSGVDF 826

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             + +N+I + L+AIK +G +  R+I+E  ++   F SL D C R+ S  LN+R LESL+ 
Sbjct: 827  TIKNNQILFGLSAIKNLGDSAIRNIIENRNSLGIFKSLADLCDRLPSNVLNKRSLESLIH 886

Query: 888  AGALDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG----TFSDKITLE 941
             GALD F    +R QLL  L+N+ ++A    ++R +   N+F  ++      FSD    +
Sbjct: 887  CGALDEFSIDNNRAQLLSDLENVIEWASSRNRDRLSGQGNLFDSKEEFSNVAFSDS---Q 943

Query: 942  KFSVENSSV--RFENEQRVLGFYFSGHPLD-VYKP--ILRKMGIKGYEESVATIRGNNIR 996
               VE+ S+  + + E+++LGFY S HPL  + KP  ++  + I   EE+    +   + 
Sbjct: 944  LAKVEDYSLIEKLKLEKQLLGFYLSDHPLKHLTKPAKLISPISISHLEETKDRTK---VS 1000

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            L  M+   +Q  TRKG R+  V   + +   EA  FP
Sbjct: 1001 LVGMIPDLKQITTRKGDRMAIVQLEDLSGSCEAIVFP 1037


>gi|328554543|gb|AEB25035.1| DNA polymerase III DnaE [Bacillus amyloliquefaciens TA208]
 gi|328912947|gb|AEB64543.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens LL3]
          Length = 1112

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/1035 (38%), Positives = 617/1035 (59%), Gaps = 56/1035 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQV S YSLL  A S+  I+ +       ++A+TD N ++ A+EF +   + GI+P
Sbjct: 2    SFVHLQVRSGYSLLNSAASVKEIVTQAKELGYSSLALTDENVMYGAIEFYKACKSHGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    I   +         T     P +VLL  T  GYQ L+++ S +  + +G    
Sbjct: 62   IIGLTASIYTDE---------TELEARP-LVLLAETNTGYQNLLKISSALQSIAKGGMKR 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAF----FFNSSQVAEKRLLTFKKLFGD-RLYV 184
            +    W++    EGLI +T G +G I+       F  + +VAE     F++LFG+ R Y+
Sbjct: 112  K----WMKSY-HEGLIAITPGENGYIESLLQAGEFEEAVRVAE----GFRELFGEGRFYL 162

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
              Q  +G++   E ++++L+   E+ + A  +  ++ +ED +A+  L A+        +D
Sbjct: 163  GYQPFKGHETLSE-EILRLSAETEIAVCAAGDVRYIKKEDQDAYRCLCAIKAGE--KWED 219

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF---ILQVHAPILPRFIEKECD 301
            +    PD YL+   EM +I+   PEA++    +A++C     + Q   P  P    K  D
Sbjct: 220  QSGDLPDLYLRPPEEMENIYMKNPEAVKAAARVAQQCQVDVSLGQTQLPSFPAPDGKSAD 279

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D   E  +E       GL +R        G   +   +RL++EL+VI RMKFS YFLIV 
Sbjct: 280  DYLAEVCHE-------GLRLRF-------GTPDERAVRRLEYELDVIRRMKFSDYFLIVW 325

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF+++A +  I  GPGRGS AGS+ AY+L ITD+DPL+ SLLFERFLNP+R+SMPD DID
Sbjct: 326  DFMKYAHEKGIVTGPGRGSAAGSLVAYSLFITDVDPLKHSLLFERFLNPERISMPDIDID 385

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F   RRDEVI+YVQNKYG   VAQIITFG+L AKAALRD GR   +   + D+L +LIP+
Sbjct: 386  FPDTRRDEVIQYVQNKYGSMHVAQIITFGTLAAKAALRDTGRVFGISPKEADQLARLIPS 445

Query: 482  DPAHPVSLQAIADDSRFREARLADPSV-DRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   ++L+     S     RL++ +V  ++ +I++K+EGL RH STHAAG+V+   PLS
Sbjct: 446  KPG--MTLEEARRQSAQLNRRLSESAVLHKVFQIARKIEGLPRHTSTHAAGVVLSKEPLS 503

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599
            ++VP+ ++    + +TQ+ M  +E  GL+K DFLGL+ LTL++     + +    K+D S
Sbjct: 504  EVVPL-QEGHDGVYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESIKTMIEKETNTKIDFS 562

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I + D +T+ LL+   T GIFQLESSGMR  L+ ++P  +EDI+A+ +LYRPGP++NI 
Sbjct: 563  EISYQDEKTFSLLSNGDTTGIFQLESSGMRNVLKRLKPSRLEDIVAVNALYRPGPMENIP 622

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            ++ +RK+G+ ++   H  +  +L +T GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ K
Sbjct: 623  LFIDRKHGRARVEVPHEDVRNILSDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSK 682

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D+++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I YQ A++
Sbjct: 683  KQKDILDRERSHFVEGCLKKEYSVVTANEVYDLIVKFANYGFNRSHAVAYSMIGYQLAYL 742

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYP+ F+   +T  + N +KI ++  +A+   +Q++PPSVN     F   +  + YSL
Sbjct: 743  KAHYPLYFMCGLLTSVIGNEDKISQYLHEAKGSGLQVLPPSVNKSGFPFAPENGAVRYSL 802

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             AIK VG +  + I +A   KPF+ L DFC RV +K +NR+ +E+L+F+GA+D F  +R 
Sbjct: 803  RAIKNVGVSAVKDIYKARTHKPFEDLFDFCFRVPAKSVNRKTIEALIFSGAMDEFNQNRA 862

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-ITLEKFSVENSSVRFENEQRV 958
             LL S+D   ++A+    +  +    +F  E  +   K +  E+F + +  +RFE E   
Sbjct: 863  ALLASVDVALEHAELFRAD--DDQMGLFLEESFSIKPKYVEAEEFPLVD-KLRFEKE--A 917

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG YFS HPL  ++ +L+K G +    ++   +G  + + A++   +  +T+ G  + ++
Sbjct: 918  LGVYFSSHPLSAFRNLLKKRGAQAIATALQMPKG-QLSIGALLAGIKTIRTKTGQHMAFL 976

Query: 1019 TFSEPAKEYEANFFP 1033
            T S+   E EA  FP
Sbjct: 977  TLSDETGEMEAVVFP 991


>gi|14195653|sp|O51526|DPO3A_BORBU RecName: Full=DNA polymerase III subunit alpha
          Length = 1147

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/976 (41%), Positives = 596/976 (61%), Gaps = 38/976 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  AGI+PI
Sbjct: 7   FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 66

Query: 71  IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IG +  +        K  + GK  +     ++LL     GY+ L++L S  YL +     
Sbjct: 67  IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 121

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+ LQR
Sbjct: 122 PRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 180

Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           H  +  D   E  V    Y+ EL  PL A N+S +++ ED  A D+++ +      S ++
Sbjct: 181 HGIKDQDIVNERLV---KYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 237

Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301
           R ++ T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E +
Sbjct: 238 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 297

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            + +     L +  + GL+ R               + R  +EL+VI  M F GYFLIV 
Sbjct: 298 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 346

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 347 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 406

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+
Sbjct: 407 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 466

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+ 
Sbjct: 467 GPK--VSLKEVLDDNSLKECFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 524

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600
            VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +  R V  D  + 
Sbjct: 525 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIK 582

Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I 
Sbjct: 583 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 642

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK
Sbjct: 643 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 702

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++
Sbjct: 703 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 762

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
           K +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L
Sbjct: 763 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 822

Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R
Sbjct: 823 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 882

Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956
             L ++LD++ +     + N+     ++F     +         + F   + S     E+
Sbjct: 883 KTLFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEK 942

Query: 957 RVLGFYFSGHPLDVYK 972
            +LGFY SGHPLD YK
Sbjct: 943 ELLGFYVSGHPLDPYK 958


>gi|313682047|ref|YP_004059785.1| DNA polymerase iii, alpha subunit [Sulfuricurvum kujiense DSM 16994]
 gi|313154907|gb|ADR33585.1| DNA polymerase III, alpha subunit [Sulfuricurvum kujiense DSM 16994]
          Length = 1179

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/1047 (37%), Positives = 619/1047 (59%), Gaps = 47/1047 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL +H+ YSLL+GA  ++ +  ++      ++A++D  N+F A++F Q+   AG++
Sbjct: 5    PPFTHLHLHTEYSLLDGANKISALAARVKELGMTSVAMSDHGNMFGAIDFYQQMRGAGLK 64

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG +  I   ++L     G         + L      GY+ L+ L S+ Y+ +     
Sbjct: 65   PIIGMEAYIHNGEDL-----GDKTIKQRFHVCLFAKNEAGYKNLMYLSSQAYI-NGFYYF 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ----------VAEKRLLTFKKLF 178
             RI    L+E  +EG+I  +    G ++     NS +           A++  L ++++F
Sbjct: 119  PRINKQLLRE-NSEGIICTSACLQGEVNWHLNTNSERNVKNGALGYDEAKRIALEYREIF 177

Query: 179  GDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            GD  Y+ + RH   D+ + + QV++++    + L+ATN++ +   +D + H+  M +  +
Sbjct: 178  GDDFYMEIMRHGIADQLFIDEQVIRISQETNIKLIATNDTHYTYADDAQYHEAFMCIGMN 237

Query: 238  TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
             +     R R +  + Y+K+  +M  +F+D+PEAL NT EI  +C   L++  P  P F 
Sbjct: 238  KLYDDPKRMRHSVHEFYIKSPEQMARLFADIPEALYNTQEIVDKCQLELKLGNPTPPNF- 296

Query: 297  EKECDDIQKEEENELR-------NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
             K   +  +EE  E+        ++   GLE RL    + +  H + YR+RL+FE+ VI 
Sbjct: 297  -KFTTEYAREEGLEIAEDSEYFIHRCRIGLEERLIH--VPQTRHTE-YRERLEFEMEVIN 352

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +MKF GY LIV DF++ AK+  I VGPGRGS AGS+ AYAL ITDIDP+++ LLFERFLN
Sbjct: 353  QMKFPGYMLIVWDFVREAKRMGIAVGPGRGSAAGSLVAYALEITDIDPMKYDLLFERFLN 412

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPD D+DF Q RR E+I YV  KYG E+VAQIITFGSL AK  +RDV R L+MP 
Sbjct: 413  PERVSMPDIDMDFMQARRGEIIDYVVQKYGREQVAQIITFGSLLAKGVIRDVARVLEMPL 472

Query: 470  SQVDRLCKLIPNDPAHPVSLQ---------AIADDSRFREARLADPSVDRLLEISQKLEG 520
            SQ D + KLIP++    ++ +         A   + + +E    D    R+ E S+KLEG
Sbjct: 473  SQADMMAKLIPDELGITLNGKTKGGEFKPGAFQKEPKIQELIENDAQAMRVWEFSKKLEG 532

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R+A  HAAG+VI + PL +  P+Y+    +  VTQ+++ ++E   LIKFDFLGLKTL 
Sbjct: 533  LKRNAGMHAAGVVISNEPLWKKTPIYKPSGEETFVTQYSLNYLEDIDLIKFDFLGLKTLD 592

Query: 581  LLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  ++  + +R  K V+   I  +D + Y ++ +  T+G+FQ+ESSGM+   + ++P  
Sbjct: 593  VIDNAIKLIKKRYNKEVNWHTIDENDPKVYEIIQSGDTIGMFQIESSGMQDLNKRLKPSS 652

Query: 640  IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             ED+IA+++LYRPGP+++ ++  +  RK+G++ I    P ++P+LK T GVI+YQEQVMQ
Sbjct: 653  FEDLIAVLALYRPGPMESGMLDDFIERKHGRQAISYTFPSMEPILKPTYGVIVYQEQVMQ 712

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            I Q + G+SL  AD++RRAMGKK  EEM K  + F  GA+  G+    A  +F+L+ KFA
Sbjct: 713  IVQTVGGFSLGGADIVRRAMGKKKIEEMQKYNKEFSEGAANQGLDYKKASELFDLIEKFA 772

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             YGFNKSH+AAYA++++QTAW+KT+YP EF+AA +T E DN +K+ K+  +A++  I + 
Sbjct: 773  GYGFNKSHSAAYAMVTFQTAWLKTYYPQEFMAALLTSEKDNTDKVVKYIDEAKRMKIFLG 832

Query: 818  PPSVNTPCVDF----KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
             P +N   ++F    K   ++I + L AIKGVG      I+EA ++  F  ++DF +R++
Sbjct: 833  APDINHSQLEFSAITKDDQDQILFGLGAIKGVGEAAVESILEARSEGEFKDIQDFINRIE 892

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             +K+N++V+E ++ AG LD FGYSR  LL+ ++ + + A+     + +   ++F  ++  
Sbjct: 893  PQKVNKKVIECIIKAGGLDHFGYSRRALLEQVETLVETAKKGSSLKKDAQFSLFGDDEEV 952

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
             + ++ L+     +     + E+  LGFY SGHPLD Y+  +  +      E      G+
Sbjct: 953  TAVELNLKNMDEFDLKTLLDFEKDTLGFYVSGHPLDNYRDQIDAINYTLSSEIENIADGS 1012

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            +      V    +K ++KGS  G V+ 
Sbjct: 1013 SAIFIGKVEEITKKMSKKGSMFGLVSL 1039


>gi|167628221|ref|YP_001678720.1| DNA polymerase iii alpha subunit, putative [Heliobacterium
            modesticaldum Ice1]
 gi|167590961|gb|ABZ82709.1| DNA polymerase iii alpha subunit, putative [Heliobacterium
            modesticaldum Ice1]
          Length = 1208

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1083 (39%), Positives = 627/1083 (57%), Gaps = 82/1083 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+GA  ++ ++D+ A    PA+AITD   ++  +EF +KA A G++PI
Sbjct: 15   FVHLHVHSEYSLLDGAARIDKLVDRAAELDMPALAITDHGVMYGVIEFYKKAKARGVKPI 74

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +  L    Q  +       +VLL    EGY+ L  LVS+ +  +      R
Sbjct: 75   IGCEVYVASRTMLDRDPQKDS---DQHHLVLLAKDIEGYRNLTALVSQAHT-EGFYYKPR 130

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +    L    ++GLI L+   +G I R    +  + A +R   ++ +FG D  Y+ LQ H
Sbjct: 131  VDHDRLAR-HSKGLIALSACLAGEIPRLLLNSQERQARERAAFYRDIFGCDNYYIELQDH 189

Query: 190  RGYDRYRESQV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
               D   + QV    ++LA    L LVATN+  ++  +D    DVL+ +     +   +R
Sbjct: 190  ---DIPAQKQVNRSLIRLAGELGLGLVATNDVHYVERKDAYIQDVLLCIQMGKTLQDTER 246

Query: 246  PRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDI 303
             +    + YLK+  EM  +F ++PEAL N++ IA  C          LP + I  E   I
Sbjct: 247  MKFDGAEFYLKSAREMAMLFGEVPEALFNSLAIAEACDLQFDFSKQHLPAYPIPDEPAFI 306

Query: 304  QKEEENELR-------NKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSG 355
            Q   E+E           A   L    +QG   +G   +D YR+RL FEL  I RM F+G
Sbjct: 307  QWRREHERAPWPGLPWGDAEQYLTYLCSQGMTWRGCAKRDDYRRRLAFELQTICRMGFAG 366

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DF  +A++  I VGPGRGS AGS+ AY L ITDIDP+ ++LLFERFLNP+R+SM
Sbjct: 367  YFLIVQDFCAFARREGILVGPGRGSAAGSLVAYVLGITDIDPIEYNLLFERFLNPERISM 426

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD DIDF   RR EVI YV +KYG +RVAQIITFG++ A+AA+RDVGR L +P + VD++
Sbjct: 427  PDIDIDFDFVRRSEVIDYVVHKYGSDRVAQIITFGTMAARAAVRDVGRVLNLPLADVDKV 486

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             K IP +    +  +AI      R A   D  +  L+E ++ +EG+ RHASTHAAG+VI 
Sbjct: 487  AKAIPAELGMTIE-KAIEISPELR-ALCQDQRISHLVETARAIEGMPRHASTHAAGVVIA 544

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
              PL   +P+ R     +  TQF    +E+ GL+K D LGLKTLTL+   +D + + RG+
Sbjct: 545  PSPLIDYLPVQRGADGGV-TTQFPKDTVEEIGLLKMDLLGLKTLTLIGDVIDKIRRSRGL 603

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            ++ L  +P DD +T+ LL+   +LG+FQLESSG+R  L  ++P+  +DIIALV+LYRPGP
Sbjct: 604  QLKLKDLPLDDPKTFQLLSRADSLGVFQLESSGLRAILRELKPNSFDDIIALVALYRPGP 663

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            + + +V  +  RK+G+  +  +HP ++P+LK+T GVI+YQEQVM+IA  L+G++L EAD+
Sbjct: 664  LQSGMVDDFIRRKHGQTTVQYLHPALEPILKDTYGVILYQEQVMRIASELAGFTLGEADM 723

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  + +   +++F+ G + + IS+  A +IF+L+  FA YGFNKSH+AAYA+I
Sbjct: 724  LRRAMGKKKPDVIAGLRQQFVEGCAAHHISEKTAGDIFDLMEFFAGYGFNKSHSAAYALI 783

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-- 830
            +YQTA++K +YPVEF+A  +T   D+ EK+ ++  + ++  I+++PP VN   +DF V  
Sbjct: 784  AYQTAYLKANYPVEFMAGLLTSVADSSEKVAQYVDECQRLGIRVLPPDVNASEIDFSVVA 843

Query: 831  ----GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                G  +I + LAA+K VG      I+ A     PF SL+DFC+R+D+++ NRRVLESL
Sbjct: 844  DPLTGGLQIRFGLAAVKNVGRGAIDAILLARETGGPFTSLDDFCTRIDNRQANRRVLESL 903

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-------------AHEKG 932
            + AGAL   G  R  LLQ LD   + A   +++      N+F               E G
Sbjct: 904  IKAGALSSLG-KRRPLLQILDKCMEVAARRQRDLATGQMNLFDFGGFGGEGGRGEPFEAG 962

Query: 933  TFSDKITLEKFSVENSSVRFEN------------------EQRVLGFYFSGHPLDVYKPI 974
              SD      FS  +S +  E                   E+ +LG YFSGHPL+  +P 
Sbjct: 963  ALSD------FSGFSSGLSAETAVPLPEIADFPHREILAMEKELLGIYFSGHPLEELRPW 1016

Query: 975  LRKMGIKGYEESVATIRGNN----IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            L +        ++A I+ +N    ++L  ++ + ++  T+KG  + + T  + +   +  
Sbjct: 1017 LEQQ----ISMTIARIQPDNDQQKVKLGGVIHALRRTTTKKGQLMAYFTLEDWSGGVDVL 1072

Query: 1031 FFP 1033
             FP
Sbjct: 1073 VFP 1075


>gi|313114111|ref|ZP_07799663.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
            KLE1255]
 gi|310623520|gb|EFQ06923.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
            KLE1255]
          Length = 1169

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/1062 (36%), Positives = 602/1062 (56%), Gaps = 54/1062 (5%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +++ L  +  FVHL +H+ YSLL+GA  ++ ++D++    Q AIA TD   ++  ++F +
Sbjct: 1    MSEALPNTRPFVHLHIHTEYSLLDGACRIDQLMDRVKECGQTAIACTDHGVMYGCVQFYK 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AGI+PIIGC++ +  +      N+          ++LL     GY+ LI++VS  +
Sbjct: 61   AAKKAGIKPIIGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLIKMVSAAF 116

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            +  +G  S       L E   EGLI L+   +G + +A      + A+   L ++ LFG+
Sbjct: 117  V--EGFYSKPRIDKELLEKYHEGLICLSACLAGEVPQAILAGDYERAKAAALWYRDLFGE 174

Query: 181  R-LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               Y+ LQ H    D     Q+++LA    +P+ ATN+S +L +ED +   +L+ +    
Sbjct: 175  ENYYIELQDHGLEEDNTVLPQLIKLARETGIPMAATNDSHYLRKEDAKMQGILLCIQTGK 234

Query: 239  VVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             +   D+     D  Y+K   EM  +FS +PEA ENT +IA +C+F        +P +  
Sbjct: 235  TIQDADKMEFQTDEFYVKTTDEMYELFSMVPEACENTAKIAEQCNFDFDFGHTKIPYY-- 292

Query: 298  KECDDIQKEEENELRNKAV------AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
                    +  N + N+A        GLE R            Q  + RL++E+ V+ +M
Sbjct: 293  --------KAPNGMDNQAFFEKLCWEGLERRYGPDV------PQANKDRLEYEIGVVKKM 338

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             ++ Y+LIV D++ +AK   IPVGPGRGSGAGS+ AY++ ITDIDP+R++L+FERFLNP+
Sbjct: 339  GYTNYYLIVWDYVNYAKSQGIPVGPGRGSGAGSIAAYSVGITDIDPIRYNLIFERFLNPE 398

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPDFD+DFC +RR EVI YV  KYG + VAQI+TFG++ A+ A+RDVGR + +PY Q
Sbjct: 399  RVSMPDFDVDFCYERRQEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGIPYQQ 458

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            VD + K +P +    +  +A+      +     DP V  L++ + K+EG+ RHASTHAAG
Sbjct: 459  VDVVAKQVPMELKMTLK-RALEVSPELKRMYDTDPQVTELIDTALKVEGMPRHASTHAAG 517

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI   P    +P+  +    LPVTQFNM  IE+ GL+K DFLGL+TLT++  +   + +
Sbjct: 518  VVITPEPTDYYLPLATN--DGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIHDAETAVQK 575

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
               +  +  + +DD +TY +L    T G+FQLESSGM+Q L G+QP  +EDIIAL+SLYR
Sbjct: 576  HHPEFSIQKLDYDDPDTYRMLGQGDTEGVFQLESSGMKQVLVGLQPQNLEDIIALISLYR 635

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+D+I  Y   ++  +KI    P +  +L  T G I+YQEQVMQI + L+G+S  +AD
Sbjct: 636  PGPMDSIPTYLRNRHEPDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQAD 695

Query: 712  VLRRAMGKKIKEEMDKQKERFISGAS----------KNGISKTIAVNIFELLAKFADYGF 761
             +RRAM KK    M+ ++E F+ G +           NGIS+ +A  I++ ++ FA Y F
Sbjct: 696  NVRRAMSKKKHAVMEAEREHFVYGCTDPGNECPGCVANGISEKVANEIYDEMSSFASYAF 755

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NKSHAA YA +++QTA++K HYP EF+AA +T  +DN +K+ ++  +  +  I+++PP V
Sbjct: 756  NKSHAACYAYVAFQTAYLKCHYPSEFMAALLTSVLDNTDKVIEYSGECARLGIKVLPPDV 815

Query: 822  NTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
            N     F   G  +I + L A+K VG     ++++   +KP+ SL DFC R+   +LNRR
Sbjct: 816  NVSNGGFTADGSGQIRFGLNAVKNVGRNLIENVVKGRQNKPYTSLYDFCKRMHGNELNRR 875

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEKGTFS 935
             +E L+ AGA D  G +R   +++++ I K  +   +   +   ++F+      + G   
Sbjct: 876  AVECLIKAGAFDHLGNNRHSHVEAVEGILKSIETDSRRNLDGQLDLFSVMSGEAQGGASE 935

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG---IKGYEESVATIR- 991
            D   +++    +     + E+ V G Y SGHPLD Y+    ++    IK      A +R 
Sbjct: 936  DNYEIKQLPEYSHKELLQQEKEVSGLYLSGHPLDAYREQSARIASHTIKDLTGEDAHVRD 995

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            G  +R+   VV  +   T+  S + + +  +     E   FP
Sbjct: 996  GEKVRIVCAVVKSRMMTTKSNSMMAFTSVEDLTGTMEVIVFP 1037


>gi|223888850|ref|ZP_03623441.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 64b]
 gi|223885666|gb|EEF56765.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 64b]
          Length = 1161

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/976 (41%), Positives = 596/976 (61%), Gaps = 38/976 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  AGI+PI
Sbjct: 21  FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80

Query: 71  IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IG +  +        K  + GK  +     ++LL     GY+ L++L S  YL +     
Sbjct: 81  IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+ LQR
Sbjct: 136 PRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194

Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           H  +  D   E  V    Y+ EL  PL A N+S +++ ED  A D+++ +      S ++
Sbjct: 195 HGIKDQDIVNERLV---KYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 251

Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301
           R ++ T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E +
Sbjct: 252 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 311

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            + +     L +  + GL+ R               + R  +EL+VI  M F GYFLIV 
Sbjct: 312 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 360

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+
Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+ 
Sbjct: 481 GPK--VSLKEVLDDNSLKECFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600
            VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +  R V  D  + 
Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIK 596

Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I 
Sbjct: 597 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 656

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK
Sbjct: 657 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 716

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++
Sbjct: 717 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 776

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
           K +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L
Sbjct: 777 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 836

Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R
Sbjct: 837 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 896

Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956
             L ++LD++ +     + N+     ++F     +         + F   + S     E+
Sbjct: 897 KTLFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEK 956

Query: 957 RVLGFYFSGHPLDVYK 972
            +LGFY SGHPLD YK
Sbjct: 957 ELLGFYVSGHPLDPYK 972


>gi|59800539|ref|YP_207251.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae FA
            1090]
 gi|240013392|ref|ZP_04720305.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            DGI18]
 gi|240120463|ref|ZP_04733425.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            PID24-1]
 gi|59717434|gb|AAW88839.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae FA
            1090]
          Length = 1144

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1045 (38%), Positives = 590/1045 (56%), Gaps = 62/1045 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            P+    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PVGAADVWIGN------PNAPDKPF----RAMLVIRNDAGYLRLSELLTEAYVGQDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDTFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F++ +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q       +     +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DCLIKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV+ KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L KL
Sbjct: 407  DVDFCQANRGRVIEYVREKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP +   P+SL          +  L     D L+ +++KLE L R    HA G++I    
Sbjct: 467  IPLEANKPLSLDDAMKAQPQIQELLEAEEADELITLAKKLEDLTRGLGMHAGGVLIAPGK 526

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595
            +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K   
Sbjct: 527  ISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNTA 581

Query: 596  ---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRP
Sbjct: 582  GDIVDVGKIPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRP 641

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP+DNI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+
Sbjct: 642  GPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADL 700

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+I
Sbjct: 701  LRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALI 760

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VG 831
            SYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    
Sbjct: 761  SYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYP 820

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            D +I Y+L AIKG G      I+ A  +   F  L DFC RV  + +NRR LE+L+  GA
Sbjct: 821  DMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGA 880

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFS 944
             D    +R  LL ++D           N   K  N  A++ G F       + + L    
Sbjct: 881  FDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDAP 931

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVS 1003
            + + S +   E+ V+GFY SGHP   Y   +R++        +  ++  +++RLA  V +
Sbjct: 932  MWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVTA 987

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYE 1028
             +    ++G +I +V+  + + + E
Sbjct: 988  VRTMMGKRG-KIAFVSLEDSSGQAE 1011


>gi|15594924|ref|NP_212713.1| DNA polymerase III subunit alpha [Borrelia burgdorferi B31]
 gi|2688500|gb|AAC66944.1| DNA polymerase III, subunit alpha (dnaE) [Borrelia burgdorferi B31]
          Length = 1161

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/976 (41%), Positives = 596/976 (61%), Gaps = 38/976 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  AGI+PI
Sbjct: 21  FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80

Query: 71  IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IG +  +        K  + GK  +     ++LL     GY+ L++L S  YL +     
Sbjct: 81  IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+ LQR
Sbjct: 136 PRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194

Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           H  +  D   E  V    Y+ EL  PL A N+S +++ ED  A D+++ +      S ++
Sbjct: 195 HGIKDQDIVNERLV---KYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 251

Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301
           R ++ T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E +
Sbjct: 252 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 311

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            + +     L +  + GL+ R               + R  +EL+VI  M F GYFLIV 
Sbjct: 312 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 360

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+
Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+ 
Sbjct: 481 GPK--VSLKEVLDDNSLKECFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600
            VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +  R V  D  + 
Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIK 596

Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I 
Sbjct: 597 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 656

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK
Sbjct: 657 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 716

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++
Sbjct: 717 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 776

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
           K +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L
Sbjct: 777 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 836

Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R
Sbjct: 837 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 896

Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956
             L ++LD++ +     + N+     ++F     +         + F   + S     E+
Sbjct: 897 KTLFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEK 956

Query: 957 RVLGFYFSGHPLDVYK 972
            +LGFY SGHPLD YK
Sbjct: 957 ELLGFYVSGHPLDPYK 972


>gi|221218188|ref|ZP_03589654.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 72a]
 gi|225549589|ref|ZP_03770555.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 118a]
 gi|221192136|gb|EEE18357.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 72a]
 gi|225369866|gb|EEG99313.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 118a]
          Length = 1161

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/976 (41%), Positives = 596/976 (61%), Gaps = 38/976 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  AGI+PI
Sbjct: 21  FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80

Query: 71  IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IG +  +        K  + GK  +     ++LL     GY+ L++L S  YL +     
Sbjct: 81  IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+ LQR
Sbjct: 136 PRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194

Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           H  +  D   E  V    Y+ EL  PL A N+S +++ ED  A D+++ +      S ++
Sbjct: 195 HGIKDQDIVNERLV---KYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 251

Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301
           R ++ T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E +
Sbjct: 252 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 311

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            + +     L +  + GL+ R               + R  +EL+VI  M F GYFLIV 
Sbjct: 312 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 360

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+
Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+ 
Sbjct: 481 GPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600
            VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +  R V  D  + 
Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RNVNPDFKIK 596

Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I 
Sbjct: 597 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 656

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK
Sbjct: 657 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 716

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++
Sbjct: 717 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 776

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
           K +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L
Sbjct: 777 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 836

Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R
Sbjct: 837 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 896

Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956
             L ++LD++ +     + N+     ++F     +         + F   + S     E+
Sbjct: 897 KTLFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEK 956

Query: 957 RVLGFYFSGHPLDVYK 972
            +LGFY SGHPLD YK
Sbjct: 957 ELLGFYVSGHPLDPYK 972


>gi|312147881|gb|ADQ30540.1| DNA polymerase III subunit alpha [Borrelia burgdorferi JD1]
          Length = 1161

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/976 (41%), Positives = 595/976 (60%), Gaps = 38/976 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  AGI+PI
Sbjct: 21  FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80

Query: 71  IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IG +  +        K  + GK  +     ++LL     GY+ L++L S  YL +     
Sbjct: 81  IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+ LQR
Sbjct: 136 PRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194

Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           H  +  D   E  V    Y+ EL  PL A N+S +++ ED  A D+++ +      S ++
Sbjct: 195 HGIKDQDIVNERLV---KYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 251

Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301
           R ++ T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E +
Sbjct: 252 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 311

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            + +     L +  + GL+ R               + R  +EL+VI  M F GYFLIV 
Sbjct: 312 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 360

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+
Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+ 
Sbjct: 481 GPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600
            VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +  R V  D  + 
Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RNVNPDFKIK 596

Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I 
Sbjct: 597 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 656

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK
Sbjct: 657 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 716

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++
Sbjct: 717 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 776

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
           K +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L
Sbjct: 777 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 836

Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R
Sbjct: 837 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 896

Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956
             L ++LD + +     + N+     ++F     +         + F   + S     E+
Sbjct: 897 KTLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEK 956

Query: 957 RVLGFYFSGHPLDVYK 972
            +LGFY SGHPLD YK
Sbjct: 957 ELLGFYVSGHPLDPYK 972


>gi|299770508|ref|YP_003732534.1| DNA polymerase III DnaE [Acinetobacter sp. DR1]
 gi|298700596|gb|ADI91161.1| DNA polymerase III DnaE [Acinetobacter sp. DR1]
          Length = 1187

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/1017 (37%), Positives = 594/1017 (58%), Gaps = 56/1017 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + ++++    DQ PA+A+TD +NL +A++F       GI+P+
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNACLKKGIKPL 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + +D   +                  LL  +  G++ L E+VSR ++  +G+Q   
Sbjct: 63   LGSTIRLDDAQH---------------RATLLAMSDVGWKSLTEIVSRGFI--EGQQLSI 105

Query: 131  ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             C+   W+ E   + +++L  G    + +    ++ Q A   L  + + FG+R+Y+ L R
Sbjct: 106  PCVKKEWVLEQHQDIIVLL--GQHSDVGQMLCSSNPQKAAPLLEAWLEKFGNRVYLALTR 163

Query: 189  HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                DR  E   +Q    LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   
Sbjct: 164  T---DRPGEEDFIQEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADNR 220

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RPR+ +P+ + K   EM+ +FSD+P A+ENT  IA+RC+  LQ+    LP +   +   I
Sbjct: 221  RPRIYSPEQHFKTSDEMIELFSDIPSAIENTYHIAKRCNVKLQLGTYFLPDYPIPDGFTI 280

Query: 304  QKEEENELRNKAVAGLEVRLAQ--GAIAKGYHAQD----YRQRLDFELNVIARMKFSGYF 357
                +    + +  GLE RL        +G    +    Y +R+D+E+ +I +M F GYF
Sbjct: 281  ----DTYFEHLSKVGLEERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYF 336

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPD
Sbjct: 337  LIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPD 396

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K
Sbjct: 397  FDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISK 456

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPS------VDRLLEISQKLEGLYRHASTHAAG 531
            ++P  P       AI  + + ++  + +PS         + E++ KLEG+ R+   HA G
Sbjct: 457  MVPTKPLGVDLATAIDMEPQLKDI-VTNPSNPDNDDASEIWEMALKLEGVTRNTGKHAGG 515

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI    ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +
Sbjct: 516  VVIAPGKITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINK 575

Query: 592  R---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
                  ++++  +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VS
Sbjct: 576  NRDSNDQLNILHVPLDDAKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVS 635

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  + +R +G +    +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L 
Sbjct: 636  LYRPGPMDLIPDFIHRMHGGD-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLG 694

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ++ F+ GA++ GI ++ A +IF+ + KFA YGFNKSHAAA
Sbjct: 695  GADLLRRAMGKKKPEEMVKQRQIFLEGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAAA 754

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+++Y TAW+K HYP EF+AA MT EM N + +     D R  N++++PPSVN     F
Sbjct: 755  YALVAYHTAWLKAHYPAEFMAAVMTSEMQNTDSVVFLIDDCRNNNLEVLPPSVNMSTYHF 814

Query: 829  KVGDNR-IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886
               +++ I Y L AIKGVG    + ++++     P+  L DFC R+D KK+N+R LE+L+
Sbjct: 815  HASNDKTIVYGLGAIKGVGEQAMQSVIDSRRQFGPYTDLFDFCHRIDLKKINKRTLEALI 874

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSV 945
             AGALDC G  R  L+  L    + A+    NR +   ++F   E+        ++ +S 
Sbjct: 875  RAGALDCLGIERASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKPAKPVKPWSD 934

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            E   VR + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+
Sbjct: 935  E---VRLKGEKDTLGLYLTGHPIDVYRQELKAFIPVKLNEITATRRGVTTVYAGLVI 988


>gi|226321045|ref|ZP_03796588.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 29805]
 gi|226233569|gb|EEH32307.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 29805]
          Length = 1161

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/976 (41%), Positives = 595/976 (60%), Gaps = 38/976 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  AGI+PI
Sbjct: 21  FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80

Query: 71  IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IG +  +        K  + GK  +     ++LL     GY+ L++L S  YL +     
Sbjct: 81  IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+ LQR
Sbjct: 136 PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194

Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           H  +  D   E  V    Y+ EL  PL A N+S +++ ED  A D+++ +      S ++
Sbjct: 195 HGIKDQDIVNERLV---NYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 251

Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301
           R ++ T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E +
Sbjct: 252 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 311

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            + +     L +  + GL+ R               + R  +EL+VI  M F GYFLIV 
Sbjct: 312 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 360

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+
Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+ 
Sbjct: 481 GPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600
            VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +  R V  D  + 
Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RNVNPDFKIK 596

Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I 
Sbjct: 597 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 656

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK
Sbjct: 657 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 716

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++
Sbjct: 717 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 776

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
           K +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L
Sbjct: 777 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 836

Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R
Sbjct: 837 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 896

Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956
             L ++LD + +     + N+     ++F     +         + F   + S     E+
Sbjct: 897 KTLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEK 956

Query: 957 RVLGFYFSGHPLDVYK 972
            +LGFY SGHPLD YK
Sbjct: 957 ELLGFYVSGHPLDPYK 972


>gi|160945128|ref|ZP_02092354.1| hypothetical protein FAEPRAM212_02647 [Faecalibacterium prausnitzii
            M21/2]
 gi|158442859|gb|EDP19864.1| hypothetical protein FAEPRAM212_02647 [Faecalibacterium prausnitzii
            M21/2]
          Length = 1169

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/1046 (36%), Positives = 599/1046 (57%), Gaps = 42/1046 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  ++ +++++    Q AIA TD   ++  ++F + A  AGI+PI
Sbjct: 11   FAHLHIHTEYSLLDGACRIDQLMERVKECGQTAIACTDHGVMYGCVQFYKAAKKAGIKPI 70

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +      N+          ++LL     GY+ LI++VS  ++  +G  S  
Sbjct: 71   IGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLIKMVSAGFV--EGFYSKP 124

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L E   EGLI L+   +G I +A      + A+   L ++ LFG +  Y+ LQ H
Sbjct: 125  RVDKQLLEQYHEGLICLSACLAGEIPQAILAGDYERAKATALWYRDLFGAENYYIELQDH 184

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                D     Q+++L+    +P+ ATN++ +L +ED +   +L+ +     +   DR   
Sbjct: 185  GLKEDSTVLPQLIKLSRETGIPMAATNDAHYLRKEDAKMQSILLCIQTGKTIQDADRMEF 244

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  Y+K   EM  +FS +PEA  NT +IA +C+F  +     +P +   +  D Q   
Sbjct: 245  QTDEFYVKTTDEMYELFSMVPEACANTAKIAEQCNFDFEFGHTKIPYYKAPDGMDNQAYF 304

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E    +    GLE R            Q    RL +E++V+  M ++ Y+LIV D+I +A
Sbjct: 305  EKLCWD----GLERRYGPDV------PQANIDRLKYEISVVKTMGYTNYYLIVWDYINFA 354

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K   IPVGPGRGSGAGS+ AY + ITDIDP+R++L+FERFLNP+R+SMPDFD+DFC +RR
Sbjct: 355  KSQGIPVGPGRGSGAGSIAAYCVGITDIDPIRYNLIFERFLNPERVSMPDFDVDFCYERR 414

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + VAQI+TFG++ A+ A+RDVGR + +PY QVD + KL+P +    +
Sbjct: 415  QEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGIPYQQVDVVAKLVPMELKMTL 474

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+   S  ++    DP V  L++ + K+EG+ RHASTHAAG+VI   P    +P+  
Sbjct: 475  K-RALEVSSELKKLYDTDPQVTELIDTALKVEGMPRHASTHAAGVVITPEPTDYYLPLAT 533

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            +    LPVTQFNM  IE+ GL+K DFLGL+TLT+++ +   + ++  +  + ++ +DD +
Sbjct: 534  N--DGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIRDAEVAVQKQHPEFSIRMLDYDDPD 591

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L    T G+FQLESSGM+Q L G+QP  +ED+IAL+SLYRPGP+D+I  Y   ++ 
Sbjct: 592  TYKMLGQGDTEGVFQLESSGMKQVLVGLQPQNLEDVIALISLYRPGPMDSIPTYLRNRHE 651

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             +KI    P +  +L  T G I+YQEQVMQI + L+G+S  +AD +RRAM KK    M+ 
Sbjct: 652  PDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRAMSKKKHAVMEA 711

Query: 728  QKERFISGASK----------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            ++E F+ G ++          NGI + +A  I++ ++ FA Y FNKSHAA YA +++QTA
Sbjct: 712  EREHFVHGCTEPGHECPGCVANGIPEQVANQIYDEMSSFASYAFNKSHAACYAYVAFQTA 771

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIY 836
            ++K HYP +F+AA +T  +DN +K+ ++  +  +  I+++PP VN     F   DN +I 
Sbjct: 772  YLKCHYPSQFMAALLTSVLDNTDKVIEYSGECARLGIKVLPPDVNISNGGFTADDNGQIR 831

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            + L A+K VG     + +    +KP+ SL DFC R+   +LNRR +ESL+ AGA DCFG 
Sbjct: 832  FGLNAVKNVGRNLIENAVTERKEKPYTSLYDFCKRMHGSELNRRAVESLIKAGAFDCFGS 891

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-----SDKITLEKFSVENSSVR 951
            +R  ++++++ I K  +   +       ++F+   G        D   +   +    +  
Sbjct: 892  NRHSMVEAVEGILKSIETDSRRNLEGQLDLFSVMSGEVQQSPQEDVYEIRPLAEYTPAEL 951

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMG---IKGYEESVATIR-GNNIRLAAMVVSKQQK 1007
             + E+ V G Y SGHPLD Y+    ++G   IK      A ++ G  +R+   VV  +  
Sbjct: 952  LQQEKEVSGLYLSGHPLDAYREKSARIGSHTIKDLTGEDAHVQDGEKVRIVCAVVKNRMM 1011

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+  S + + +  +     E   FP
Sbjct: 1012 TTKSNSMMAFTSVEDLTGTMEVIVFP 1037


>gi|312149376|gb|ADQ29447.1| DNA polymerase III subunit alpha [Borrelia burgdorferi N40]
          Length = 1161

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/976 (41%), Positives = 595/976 (60%), Gaps = 38/976 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  AGI+PI
Sbjct: 21  FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80

Query: 71  IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IG +  +        K  + GK  +     ++LL     GY+ L++L S  YL +     
Sbjct: 81  IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+ LQR
Sbjct: 136 PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194

Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           H  +  D   E  V    Y+ EL  PL A N+S +++ ED  A D+++ +      S ++
Sbjct: 195 HGIKDQDIVNERLV---NYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 251

Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301
           R ++ T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E +
Sbjct: 252 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 311

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            + +     L +  + GL+ R               + R  +EL+VI  M F GYFLIV 
Sbjct: 312 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 360

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+
Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+ 
Sbjct: 481 GPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600
            VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +  R V  D  + 
Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RNVNPDFKIK 596

Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I 
Sbjct: 597 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 656

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK
Sbjct: 657 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 716

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++
Sbjct: 717 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 776

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
           K +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L
Sbjct: 777 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 836

Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R
Sbjct: 837 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 896

Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956
             L ++LD + +     + N+     ++F     +         + F   + S     E+
Sbjct: 897 KTLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEK 956

Query: 957 RVLGFYFSGHPLDVYK 972
            +LGFY SGHPLD YK
Sbjct: 957 ELLGFYVSGHPLDPYK 972


>gi|162452023|ref|YP_001614390.1| DNA polymerase III, alpha subunit [Sorangium cellulosum 'So ce 56']
 gi|161162605|emb|CAN93910.1| DNA polymerase III, alpha subunit [Sorangium cellulosum 'So ce 56']
          Length = 1212

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1070 (38%), Positives = 605/1070 (56%), Gaps = 68/1070 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  F+HL VHS YSLL+G+L + ++  +  +    A+A+TD  N+F A++  +     GI
Sbjct: 2    TAEFIHLHVHSQYSLLDGSLRVKDLAARAKSLGMRAVALTDHGNMFGAIQHYKACKDQGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
              IIGC++++            ++     P   +VLL ++ EGY+ L+ +VS+ ++    
Sbjct: 62   GAIIGCEVNVARSWGTAAGQVSRSGVDETPVDHLVLLAASEEGYKNLVRIVSQGHVDPAS 121

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYV 184
              +  + L  + +    GLI LTG   G + +           + L   +  F    LYV
Sbjct: 122  GLAPSVRLDTVAQ-HNAGLIGLTGCMGGVVAQRILEQGEGEGREALSRLRDCFQPGSLYV 180

Query: 185  NLQRHRGYDRYRESQVVQLAYTH-ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ H   ++   + ++  A     LPLVATN++ F + ED E    L  +A +   ++ 
Sbjct: 181  ELQDHGLVEQSVLNGILARAAGDLGLPLVATNDAHFGAREDGEGQLYLSCIAANRTFAEA 240

Query: 244  DRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI-LQVHAPILPRFIEKECD 301
                    + +LK   EM+ +F D P+A+ +T+EIA RCS + L++  P+LP F      
Sbjct: 241  SAAHHGSFEMFLKPADEMMHLFRDHPQAVRSTLEIAERCSTLKLKLGKPMLPTF---PLP 297

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGA-IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  +  R+ A  GL  RLAQ A   +      YR RLD ELNVI +M F GYFLIV
Sbjct: 298  SGFADSASYFRHVAHDGLTKRLAQIAQTGRKVDEATYRARLDVELNVIVQMDFPGYFLIV 357

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++AK + IPVGPGRGSGAGS+ AYA+ ITD+DPL ++LLFERFLNP+R+SMPDFD+
Sbjct: 358  WDFIKYAKDHGIPVGPGRGSGAGSLVAYAMEITDLDPLPYNLLFERFLNPERVSMPDFDV 417

Query: 421  DFCQDRRDEVIRYVQNKYGHE----RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFC DRRDEVI YV  KY  E     V QI TF  L+A++ ++DV RA+  P ++  ++ 
Sbjct: 418  DFCMDRRDEVISYVTKKYSKEADKPSVGQIATFHELKARSVIKDVARAMAFPANEAQKIA 477

Query: 477  KLIP-NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             LIP   P    ++ +A+  + + +  + +DP+V  LL+ +QKLEGL RHA  HAAG+VI
Sbjct: 478  SLIPQKSPGIMYTIPEALEIEPKLKALKESDPTVAELLKQAQKLEGLTRHAGMHAAGVVI 537

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-------D 587
             + PL   VP +++   +  VTQ+     E AGL+KFDFLGLKTLT++  ++       D
Sbjct: 538  SEGPLWDHVPCFKN--GEQLVTQYYKDDAELAGLVKFDFLGLKTLTVIDIAVRLVNARPD 595

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
              A+ G + D++ +P DD  TY LL +  T G+FQLESSGM+Q  + ++PD  EDI+A V
Sbjct: 596  LAAKEGKRFDVNTVPLDDTATYALLQSGETTGVFQLESSGMQQLFKDLKPDAFEDIVAAV 655

Query: 648  SLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +LYRPGP+   +V  + + K+G++ I  +HPL+D +L+ T GVI+YQEQVMQIAQ L+GY
Sbjct: 656  ALYRPGPLGTGMVKDFVDCKHGRKPIEKMHPLVDELLQPTYGVIVYQEQVMQIAQKLAGY 715

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQK  F+ G+ KNG+    A  IF LL  FA YGFNKSH
Sbjct: 716  TLGGADLLRRAMGKKKPEEMAKQKATFVDGSLKNGVKAEDAERIFGLLEYFAGYGFNKSH 775

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA+++YQTA++K HYPVEFL A MT + D +EK+ +   + R + ++I+PP +N   
Sbjct: 776  SAAYALLTYQTAYLKAHYPVEFLCALMTADRDKIEKVVRIIAEGRAWGVEILPPEINESK 835

Query: 826  VDFKVG--------------------------DNRIYYSLAAIKGVGTTTARHIMEA-SA 858
             DF V                           D +I + + AI+GVG +    I+EA  A
Sbjct: 836  TDFTVVYSAKPATNGKRVAGTRRGGSRVRDPYDPKIRFGMGAIRGVGESALEAILEARDA 895

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF----GYSRMQLLQSLDNIQKYAQW 914
               F  L DF  RVD +++N+ V E+LV  GA D      G SR +    +D   + ++ 
Sbjct: 896  GGVFADLFDFAERVDPRRVNKGVFEALVQCGAFDASLHARGISRARAFAGIDRALERSRS 955

Query: 915  VEKNRTNKHENIFA----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
              K R +    +FA      +    D  T E + +  +  R   E++ LGFY SGHPLD 
Sbjct: 956  ASKERNSAQIGLFAAVASKSEVRLDDYPTAEDWDLRETLSR---EKQSLGFYVSGHPLDR 1012

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y   L +  +              +R+  MV   +++  + G   G + F
Sbjct: 1013 YGVDLNRFDVTAVSALAGMDAWARVRVGGMVEGYRERIFKGGG--GKIAF 1060


>gi|293608355|ref|ZP_06690658.1| DNA polymerase III [Acinetobacter sp. SH024]
 gi|292828928|gb|EFF87290.1| DNA polymerase III [Acinetobacter sp. SH024]
          Length = 1187

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/1017 (38%), Positives = 594/1017 (58%), Gaps = 56/1017 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + ++++    DQ PA+A+TD +NL +A++F       GI+P+
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNSCLKKGIKPL 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + +D   +                  LL  +  G++ L E+VSR ++  +G+Q   
Sbjct: 63   LGSTIRLDDAQH---------------RATLLAMSNVGWKSLTEIVSRGFI--EGQQLSI 105

Query: 131  ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             C+   W+ E   + +++L  G    + +    ++ Q A   L  + + FG+R+Y+ L R
Sbjct: 106  PCVQKEWVLEQHQDIIVLL--GQHSDVGQMLCSSNPQKAAPLLEAWIEKFGNRVYLALTR 163

Query: 189  HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                DR  E   +Q    LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   
Sbjct: 164  T---DRPGEEDFIQEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADDR 220

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RPR+ +P+ + K  +EM+ +FSD+P A+ENT  IA+RC+  LQ+    LP +   +   I
Sbjct: 221  RPRLYSPEQHFKTSNEMIELFSDIPSAIENTYNIAKRCNVSLQLGTYFLPDYPIPDGFTI 280

Query: 304  QKEEENELRNKAVAGLEVRL--AQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYF 357
                +    + +  GLE RL        +G    +    Y +R+D+E+ +I +M F GYF
Sbjct: 281  ----DTYFEHLSKVGLEERLDYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYF 336

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPD
Sbjct: 337  LIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPD 396

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K
Sbjct: 397  FDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISK 456

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPS------VDRLLEISQKLEGLYRHASTHAAG 531
            ++P  P       AI  + + ++  + +PS         + E++ KLEG+ R+   HA G
Sbjct: 457  MVPTKPLGVDLATAIEMEPQLKDI-VTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGG 515

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI    ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +
Sbjct: 516  VVIAPGKITDFSAVLCDEDGTSRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINK 575

Query: 592  RGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
                 D   +S +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VS
Sbjct: 576  NRDSNDPLIISHVPLDDAKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVS 635

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  + +R +G +    +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L 
Sbjct: 636  LYRPGPMDLIPDFIHRMHGGD-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLG 694

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ++ F++GA++ GI ++ A +IF+ + KFA YGFNKSHAAA
Sbjct: 695  GADLLRRAMGKKKPEEMVKQRQIFLAGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAAA 754

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+++Y TAW+K HYP EF+AA M+ EM N + +     D R   ++++PPSVN     F
Sbjct: 755  YALVAYHTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYHF 814

Query: 829  KVGDNR-IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886
               D++ I Y L AIKGVG    + ++++     P+  L DFC R+D KK+N+R LE+L+
Sbjct: 815  HASDDKTIVYGLGAIKGVGEQAMQSVIDSRRQFGPYTDLFDFCHRIDLKKINKRTLEALI 874

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSV 945
             AGALDC G  R  L+  L    + A+    NR +   ++F   E+        ++ +S 
Sbjct: 875  RAGALDCLGIERASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKPAKPVKPWSD 934

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            E   VR + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+
Sbjct: 935  E---VRLKGEKDTLGLYLTGHPIDVYRQELKAFIPVKLNEITATRRGVTTVYAGLVI 988


>gi|194097697|ref|YP_002000738.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            NCCP11945]
 gi|239998209|ref|ZP_04718133.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            35/02]
 gi|240015834|ref|ZP_04722374.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            FA6140]
 gi|240112181|ref|ZP_04726671.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            MS11]
 gi|240114926|ref|ZP_04728988.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            PID18]
 gi|240117214|ref|ZP_04731276.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            PID1]
 gi|240122764|ref|ZP_04735720.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            PID332]
 gi|240124957|ref|ZP_04737843.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            SK-92-679]
 gi|240127469|ref|ZP_04740130.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            SK-93-1035]
 gi|254492986|ref|ZP_05106157.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae 1291]
 gi|260441259|ref|ZP_05795075.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            DGI2]
 gi|268594063|ref|ZP_06128230.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268598240|ref|ZP_06132407.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae MS11]
 gi|268600585|ref|ZP_06134752.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID18]
 gi|268602902|ref|ZP_06137069.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID1]
 gi|268681369|ref|ZP_06148231.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID332]
 gi|268683537|ref|ZP_06150399.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-92-679]
 gi|268685843|ref|ZP_06152705.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-93-1035]
 gi|291044605|ref|ZP_06570314.1| DNA polymerase III [Neisseria gonorrhoeae DGI2]
 gi|293397724|ref|ZP_06641930.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae F62]
 gi|193932987|gb|ACF28811.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            NCCP11945]
 gi|226512026|gb|EEH61371.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae 1291]
 gi|268547452|gb|EEZ42870.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268582371|gb|EEZ47047.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae MS11]
 gi|268584716|gb|EEZ49392.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID18]
 gi|268587033|gb|EEZ51709.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID1]
 gi|268621653|gb|EEZ54053.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID332]
 gi|268623821|gb|EEZ56221.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-92-679]
 gi|268626127|gb|EEZ58527.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-93-1035]
 gi|291011499|gb|EFE03495.1| DNA polymerase III [Neisseria gonorrhoeae DGI2]
 gi|291611670|gb|EFF40739.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae F62]
 gi|317163496|gb|ADV07037.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            TCDC-NG08107]
          Length = 1144

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1045 (38%), Positives = 590/1045 (56%), Gaps = 62/1045 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            P+    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PVGAADVWIGN------PNAPDKPF----RAMLVIRNDAGYLRLSELLTEAYVGQDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDTFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F++ +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q       +     +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DCLIKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV+ KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L KL
Sbjct: 407  DVDFCQANRGRVIEYVREKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP +   P+SL          +  L     D L+ +++KLE L R    HA G++I    
Sbjct: 467  IPLEANKPLSLDDAMKAQPQIQELLEAEEADELITLAKKLEDLTRGLGMHAGGVLIAPGK 526

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595
            +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K   
Sbjct: 527  ISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNTA 581

Query: 596  ---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRP
Sbjct: 582  GDIVDVGKIPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRP 641

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP+DNI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+
Sbjct: 642  GPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADL 700

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+I
Sbjct: 701  LRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALI 760

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    
Sbjct: 761  SYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYP 820

Query: 833  N-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            N +I Y+L AIKG G      I+ A  +   F  L DFC RV  + +NRR LE+L+  GA
Sbjct: 821  NMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGA 880

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFS 944
             D    +R  LL ++D           N   K  N  A++ G F       + + L    
Sbjct: 881  FDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDAP 931

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVS 1003
            + + S +   E+ V+GFY SGHP   Y   +R++        +  ++  +++RLA  V +
Sbjct: 932  MWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVTA 987

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYE 1028
             +    ++G +I +V+  + + + E
Sbjct: 988  VRTMMGKRG-KIAFVSLEDSSGQAE 1011


>gi|240079974|ref|ZP_04724517.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            FA19]
 gi|268596113|ref|ZP_06130280.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
 gi|268549901|gb|EEZ44920.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
          Length = 1144

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1045 (38%), Positives = 590/1045 (56%), Gaps = 62/1045 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            P+    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PVGAADVWIGN------PNAPDKPF----RAMLVIRNDAGYLRLSELLTEAYVGQDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDTFYLELQ 173

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R      +    S  V+LA    LP+VAT+ + F++ +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
            PR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234  PRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            D   +  NE       GL+ R+ Q       +     +Y++RLDFELN+I +MKF GYFL
Sbjct: 294  DCLIKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347  IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQ  R  VI YV+ KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L KL
Sbjct: 407  DVDFCQANRGRVIEYVREKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP +   P+SL          +  L     D L+ +++KLE L R    HA G++I    
Sbjct: 467  IPLEANKPLSLDDAMKAQPQIQELLEAEEADELITLAKKLEDLTRGLGMHAGGVLIAPGK 526

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595
            +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K   
Sbjct: 527  ISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNTA 581

Query: 596  ---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRP
Sbjct: 582  GDIVDVGKIPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRP 641

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP+DNI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+
Sbjct: 642  GPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADL 700

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+I
Sbjct: 701  LRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALI 760

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    
Sbjct: 761  SYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYP 820

Query: 833  N-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            N +I Y+L AIKG G      I+ A  +   F  L DFC RV  + +NRR LE+L+  GA
Sbjct: 821  NMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGA 880

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFS 944
             D    +R  LL ++D           N   K  N  A++ G F       + + L    
Sbjct: 881  FDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDAP 931

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVS 1003
            + + S +   E+ V+GFY SGHP   Y   +R++        +  ++  +++RLA  V +
Sbjct: 932  MWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVTA 987

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYE 1028
             +    ++G +I +V+  + + + E
Sbjct: 988  VRTMMGKRG-KIAFVSLEDSSGQAE 1011


>gi|218249957|ref|YP_002375087.1| DNA polymerase III subunit alpha [Borrelia burgdorferi ZS7]
 gi|226321885|ref|ZP_03797411.1| DNA polymerase III subunit alpha [Borrelia burgdorferi Bol26]
 gi|218165145|gb|ACK75206.1| DNA polymerase III subunit alpha [Borrelia burgdorferi ZS7]
 gi|226233074|gb|EEH31827.1| DNA polymerase III subunit alpha [Borrelia burgdorferi Bol26]
          Length = 1161

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/976 (41%), Positives = 595/976 (60%), Gaps = 38/976 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  AGI+PI
Sbjct: 21  FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80

Query: 71  IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IG +  +        K  + GK  +     ++LL     GY+ L++L S  YL +     
Sbjct: 81  IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+ LQR
Sbjct: 136 PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194

Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           H  +  D   E  V    Y+ EL  PL A N+S +++ ED  A D+++ +      S ++
Sbjct: 195 HGIKDQDIVNERLV---NYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 251

Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301
           R ++ T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E +
Sbjct: 252 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 311

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            + +     L +  + GL+ R               + R  +EL+VI  M F GYFLIV 
Sbjct: 312 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 360

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+
Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+ 
Sbjct: 481 GPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600
            VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +  R V  D  + 
Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RNVNPDFKIK 596

Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I 
Sbjct: 597 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 656

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK
Sbjct: 657 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 716

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++
Sbjct: 717 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 776

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
           K +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L
Sbjct: 777 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 836

Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R
Sbjct: 837 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 896

Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956
             L ++LD + +     + N+     ++F     +         + F   + S     E+
Sbjct: 897 KTLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEK 956

Query: 957 RVLGFYFSGHPLDVYK 972
            +LGFY SGHPLD YK
Sbjct: 957 ELLGFYVSGHPLDPYK 972


>gi|224533626|ref|ZP_03674215.1| DNA polymerase III subunit alpha [Borrelia burgdorferi CA-11.2a]
 gi|224513299|gb|EEF83661.1| DNA polymerase III subunit alpha [Borrelia burgdorferi CA-11.2a]
          Length = 1161

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/976 (41%), Positives = 595/976 (60%), Gaps = 38/976 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  AGI+PI
Sbjct: 21  FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80

Query: 71  IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IG +  +        K  + GK  +     ++LL     GY+ L++L S  YL +     
Sbjct: 81  IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+ LQR
Sbjct: 136 PRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194

Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           H  +  D   E  V    Y+ EL  PL A N+S +++ ED  A D+++ +      S ++
Sbjct: 195 HGIKDQDIVNERLV---NYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 251

Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301
           R ++ T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E +
Sbjct: 252 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 311

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            + +     L +  + GL+ R               + R  +EL+VI  M F GYFLIV 
Sbjct: 312 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 360

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+
Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+ 
Sbjct: 481 GPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600
            VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +  R V  D  + 
Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RNVNPDFKIK 596

Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I 
Sbjct: 597 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 656

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK
Sbjct: 657 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 716

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++
Sbjct: 717 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 776

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
           K +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L
Sbjct: 777 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 836

Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R
Sbjct: 837 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 896

Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956
             L ++LD + +     + N+     ++F     +         + F   + S     E+
Sbjct: 897 KTLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQAFKEYSYSELLGFEK 956

Query: 957 RVLGFYFSGHPLDVYK 972
            +LGFY SGHPLD YK
Sbjct: 957 ELLGFYVSGHPLDPYK 972


>gi|289422260|ref|ZP_06424114.1| DNA polymerase III subunit alpha [Peptostreptococcus anaerobius
            653-L]
 gi|289157311|gb|EFD05922.1| DNA polymerase III subunit alpha [Peptostreptococcus anaerobius
            653-L]
          Length = 1193

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/1066 (37%), Positives = 618/1066 (57%), Gaps = 57/1066 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +E++  F HL VH+ YSLL+G   L+ ++ ++      + AITD   +F A++F +K   
Sbjct: 1    MEENKDFCHLHVHTEYSLLDGFSRLDRLIPRLKELGMTSCAITDHGTMFGAIDFYKKCKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLD 123
             GI+PIIGC++ +      +  +Q  +      S ++LL    EGY+ LI++VS  Y+ D
Sbjct: 61   EGIKPIIGCEVYV----APRTLDQKDSVLDKYSSHLILLAENNEGYENLIKIVSDSYV-D 115

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182
                  R     L++  ++G+I L+   +G + +A    + + A    + ++ +FG D  
Sbjct: 116  GFYYKPRTDKDQLRKY-SKGIICLSACLNGEVAKALLARNYENALNYAVEYRDIFGKDNF 174

Query: 183  YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +Q H+   D+   + +++++    +PLVATN++ ++  ED +  DVLM +A    + 
Sbjct: 175  YLEMQDHKLAEDKEVNAGLIKISKELGIPLVATNDAHYVYREDSKIQDVLMCIAMQKTLD 234

Query: 242  QKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R +   D  Y+K+R EM  +F  +PEA++NT+EIA+RC+     +   +P F   E 
Sbjct: 235  DPSRMKFPNDEFYIKSREEMEGLFKFVPEAIDNTLEIAKRCNVEFDFNNYHIPTFKVPE- 293

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                  EE+ LR     GLE R             + R RL+FE+N IA M +  YFLIV
Sbjct: 294  ---GYTEESYLRYLCQKGLEERYED-------ITDEIRDRLEFEINTIANMGYIEYFLIV 343

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI +AK+NNI VGPGRGS AGS+ AY L ITDIDP++++LLFERFLNP+R++MPD DI
Sbjct: 344  WDFINFAKENNIMVGPGRGSAAGSIVAYTLKITDIDPIKYNLLFERFLNPERVTMPDIDI 403

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC  RR+EVI YV+ KYG + VAQIITFG++ AK A+RDVGR L + Y++VD + K IP
Sbjct: 404  DFCYKRREEVIEYVKRKYGSDHVAQIITFGTMGAKLAIRDVGRVLDIAYNKVDAVAKEIP 463

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +    +  +A   +    E   +D  V  ++++S+KLEG+ RHASTHAAG+VI  RP+ 
Sbjct: 464  FELNMTID-KAFDKNPTLTEMYESDQDVKEVIDVSRKLEGMVRHASTHAAGVVISKRPVH 522

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGV-- 594
              VP+YR+   D   TQF M  +E+ GL+K DFLGL+TLT+++ +LD +      RG   
Sbjct: 523  DYVPLYRN--QDSITTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIEINREDRGYTE 580

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            K+D S + +DD + Y LL++  TLG+FQLESSGMR  ++ ++PD  EDI+A +SL+RPGP
Sbjct: 581  KIDFSKMDYDDPKVYELLSSGNTLGVFQLESSGMRNFMKQLKPDSFEDIVAGISLFRPGP 640

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D+I  Y + KN  E+   +H  + P+L+ T G ++YQEQVMQ+ + L+GYS   +D++R
Sbjct: 641  MDSIPRYISFKNNPEEATYLHEKLRPILEVTYGCLVYQEQVMQVVRELAGYSFGRSDLVR 700

Query: 715  RAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFN 762
            RAM KK  + M+++++ FI             G  +NG+ + IA  IF+ +  FA Y FN
Sbjct: 701  RAMSKKKMDVMEEERQYFIHGKFDDKGNIEIPGCIRNGVPEDIANQIFDDMIDFAKYAFN 760

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            KSHAAAY V++Y+TA++KT+YPVEF+AA MT  + N +K+ ++ ++  +  I+++PP +N
Sbjct: 761  KSHAAAYGVLAYETAYLKTYYPVEFMAALMTSVIGNTDKVVEYMRECSKLGIEVLPPDIN 820

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRV 881
                 F V    I + L A+K VG      I+ E      F    +   R+DS+  N+R 
Sbjct: 821  RSYSMFSVDKGHIRFGLVAVKNVGANVIDGIVKEREEGGEFTDFVNMIKRLDSRFTNKRA 880

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGT---FSD 936
            +ESL+  GALD  G +R  LL S ++I       +K       ++F    ++G      D
Sbjct: 881  IESLIKCGALDSLGETRASLLLSFEDILDSVSRDKKRNVEGQISLFDMVSDQGQDLGIID 940

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATI 990
              +++ +      +  + E+ V+G Y SGHPL  Y+ IL +        IK  +E    +
Sbjct: 941  NTSIKHYDEFKQKIILDMEKEVMGMYISGHPLSEYEDILARRTSINNFKIKELKEDPKLL 1000

Query: 991  RGNNIR---LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  N +   +  +VVS +   T++   + +V   +     E   FP
Sbjct: 1001 QELNDQEHIVGGIVVSSRLMTTKRNEMMAFVEIEDIFGSLEVVVFP 1046


>gi|325121909|gb|ADY81432.1| DNA polymerase III, alpha chain [Acinetobacter calcoaceticus PHEA-2]
          Length = 1187

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/1018 (38%), Positives = 594/1018 (58%), Gaps = 58/1018 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + ++++    DQ PA+A+TD +NL +A++F       GI+P+
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNSCLKKGIKPL 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + +D   +                  LL  +  G++ L E+VSR ++  +G+Q   
Sbjct: 63   LGSTIRLDDAQH---------------RATLLAMSNVGWKSLTEIVSRGFI--EGQQLSI 105

Query: 131  ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             C+   W+ E   + +++L  G    + +    ++ Q A   L  + + FG+R+Y+ L R
Sbjct: 106  PCVKKEWVLEQHQDIIVLL--GQHSDVGQMLCSSNPQKAAPLLEAWIEKFGNRVYLALTR 163

Query: 189  HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                DR  E   +Q    LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   
Sbjct: 164  T---DRPGEEDFIQEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADDR 220

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RPR+ +P+ + K   EM+ +FSD+P A+ENT  IA+RC+  LQ+    LP +   +   I
Sbjct: 221  RPRLYSPEQHFKTSDEMIELFSDIPSAIENTYNIAKRCNVSLQLGTYFLPDYPIPDGFTI 280

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARMKFSGY 356
                +    + +  GLE RL      +   ++D       Y +R+D+E+ +I +M F GY
Sbjct: 281  ----DTYFEHLSKVGLEERLDYLYPVEK-RSEDWPEIRKPYDERIDYEVGIILKMGFPGY 335

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 336  FLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMP 395

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ 
Sbjct: 396  DFDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRIS 455

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPS------VDRLLEISQKLEGLYRHASTHAA 530
            K++P  P       AI  + + ++  + +PS         + E++ KLEG+ R+   HA 
Sbjct: 456  KMVPTKPLGVDLATAIEMEPQLKDI-VTNPSNPDNDDASEIWEMALKLEGITRNTGKHAG 514

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VI    ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + 
Sbjct: 515  GVVIAPGKITDFSAVLCDEDGTSRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNIN 574

Query: 591  QRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            +     D   +S +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA V
Sbjct: 575  KNRDSNDPLIISHVPLDDAKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFV 634

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            SLYRPGP+D I  + +R +G +    +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L
Sbjct: 635  SLYRPGPMDLIPDFIHRMHGGD-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTL 693

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ++ F++GA++ GI ++ A +IF+ + KFA YGFNKSHAA
Sbjct: 694  GGADLLRRAMGKKKPEEMVKQRQIFLAGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAA 753

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA+++Y TAW+K HYP EF+AA M+ EM N + +     D R   ++++PPSVN     
Sbjct: 754  AYALVAYHTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYH 813

Query: 828  FKVGDNR-IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
            F   D++ I Y L AIKGVG    + ++++     P+  L DFC R+D KK+N+R LE+L
Sbjct: 814  FHASDDKTIVYGLGAIKGVGEQAMQSVIDSRRQFGPYTDLFDFCHRIDLKKINKRTLEAL 873

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFS 944
            + AGALDC G  R  L+  L    + A+    NR +   ++F   E+        ++ +S
Sbjct: 874  IRAGALDCLGIERASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKPAKPVKPWS 933

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             E   VR + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+
Sbjct: 934  DE---VRLKGEKDTLGLYLTGHPIDVYRQELKAFIPVKLNEITATRRGVTTVYAGLVI 988


>gi|195941713|ref|ZP_03087095.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 80a]
          Length = 1161

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/973 (41%), Positives = 595/973 (61%), Gaps = 32/973 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  AGI+PI
Sbjct: 21  FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80

Query: 71  IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IG +  +        K  + GK  +     ++LL     GY+ L++L S  YL +     
Sbjct: 81  IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+ LQR
Sbjct: 136 PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194

Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S ++R +
Sbjct: 195 HGIKDQDIVNERLVEYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDENRLK 254

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECDDIQ 304
           + T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E + + 
Sbjct: 255 METNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFNTLG 314

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
           +     L +  + GL+ R               + R  +EL+VI  M F GYFLIV DFI
Sbjct: 315 EY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVWDFI 363

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           ++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDIDFC 
Sbjct: 364 KFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDIDFCF 423

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+ P 
Sbjct: 424 EGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPDGPK 483

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+  VP
Sbjct: 484 --VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTDYVP 541

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IP 602
           +Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +  R V  D  +  IP
Sbjct: 542 IYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIKNIP 599

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  + 
Sbjct: 600 DNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQFI 659

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK +
Sbjct: 660 AAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKKE 719

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
           +EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K +
Sbjct: 720 DEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLKAN 779

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
           YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L  I
Sbjct: 780 YPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLNGI 839

Query: 843 KGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           K +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R  L
Sbjct: 840 KNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRKTL 899

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            ++LD + +     + N+     ++F     +         + F   + S     E+ +L
Sbjct: 900 FENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKELL 959

Query: 960 GFYFSGHPLDVYK 972
           GFY SGHPLD YK
Sbjct: 960 GFYVSGHPLDPYK 972


>gi|290968934|ref|ZP_06560469.1| DNA polymerase III, alpha subunit [Megasphaera genomosp. type_1 str.
            28L]
 gi|290780890|gb|EFD93483.1| DNA polymerase III, alpha subunit [Megasphaera genomosp. type_1 str.
            28L]
          Length = 1163

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/1045 (36%), Positives = 598/1045 (57%), Gaps = 52/1045 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSL +G   +  ++    A   PAIA+TD  N++ A+   ++A A GI+PI
Sbjct: 4    FVHLHVHTQYSLFDGLCRIPEMVQMAKAMNMPAIAVTDHGNMYGAVHLYKEAKAQGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQSV 129
            +GC++ +      +   + +     +  ++LL    +GY  L+++VS+ Y+         
Sbjct: 64   LGCEIYMTRGSRFEKKTRER-----LCHLILLAKNTQGYHNLVKIVSKGYVDGVNNYHKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L++   EG+I L+    G I +    +    A K L     +FG D  Y+ +Q 
Sbjct: 119  RVDYELLEQY-HEGIIALSACIEGHIQQDILNHDEAAAIKTLQRLTGIFGKDDFYLEVQN 177

Query: 189  HRGYDRYRESQVVQLAYTH-----ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            H       E ++V+  +        + LVATN+  +L + D  A +V + ++  + ++  
Sbjct: 178  HG----IPEEKIVRRVFKEWSQQFGIRLVATNDYHYLKKNDAPAQEVKLCISTGSTLNNP 233

Query: 244  DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI----EK 298
            D  +   D  Y+K+  EM  +F D+PEAL  T+EIA +C+  L+     +P F     E 
Sbjct: 234  DHFKFFNDSFYMKSYEEMAELFPDMPEALATTLEIAEKCNVELKFDERHVPSFPVPSGET 293

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +   ++K  E  L  K     E                 R+R+D+EL++IA+M F  YFL
Sbjct: 294  DASYLRKLCEQSLPEKYPTVTET---------------VRKRVDYELDIIAQMGFPSYFL 338

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV D++++A+ ++IPVGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R++MPD 
Sbjct: 339  IVWDYVKFARDHHIPVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVTMPDI 398

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC + R ++I YV  KYG + V+QIITFG+L AKA LRDVGR L++P S+V+R+ K+
Sbjct: 399  DMDFCYENRSKIIDYVTRKYGKDHVSQIITFGTLAAKAVLRDVGRVLEIPLSEVNRIVKM 458

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +PN+    +  +A+      RE    DP + R + + + LEGL RHASTHAAGIVI   P
Sbjct: 459  VPNELGMTLD-KALEQSRELRETVAKDPQIQRWMALGKALEGLVRHASTHAAGIVISAAP 517

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            +   +P+       L  TQ++ + +E+ GL+K DFLGL+TLT++  ++  + +  G  +D
Sbjct: 518  IDDYIPLQYSKEGYL-TTQYDKELVEELGLLKMDFLGLRTLTVIGDTIKLIKENHGTDID 576

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               IP DD  T  +LT   T G+FQ+ES G+   ++ + P   ED+I LV+LYRPGP+ +
Sbjct: 577  PDHIPLDDEATCRMLTMGDTAGVFQMESDGITALVKELAPKHFEDMIPLVALYRPGPLGS 636

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  +  R +G+  +  +HPL++P+L++T GVI+YQEQVMQIA  + G++L +AD+LRR
Sbjct: 637  GMVEDFIKRSHGETAVTYLHPLLEPILRDTYGVILYQEQVMQIASSMGGFTLGQADLLRR 696

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK +  +  Q++ F++G   NGI   +A  +F+L+  FA YGFNKSH+AAYA +++Q
Sbjct: 697  AMGKKKESILKAQRDLFLAGTRANGIEDEVAHKVFDLMVYFAGYGFNKSHSAAYAYVAWQ 756

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HY  E +AA+MT  +++V KI  +  + R+  I ++ P VNT    F V + RI
Sbjct: 757  TAYLKAHYRAELMAATMTSMINDVAKISYYISECRRHGIAVLSPDVNTSVSTFSVENGRI 816

Query: 836  YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+ +K VG      I+ E     PF SL DFCSRV+   +NRRV+ESL+  GA+D F
Sbjct: 817  RFGLSGVKNVGENVIAVILQERQEGGPFTSLSDFCSRVNYHVVNRRVIESLIRCGAMDSF 876

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---EKGTFS-DKITLEKFSVENSSV 950
            G  R QL+Q LD         +K+R      +F     E+  F      +E+FS+E    
Sbjct: 877  GKYRSQLIQVLDRAMALGASKQKDRDTGQMGLFDEDDTEEALFDLSYPEIEEFSIEE--- 933

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKG--YEESVATIRGNNIRLAAMVVSKQQKK 1008
            R   E+   GFYFSGHPL+ YK  +  +      Y E      G  I    ++ ++++  
Sbjct: 934  RLAMEKEYDGFYFSGHPLNKYKEQMAALTPLSALYGEHARQYDGKEIYCGGLISTQRRVT 993

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T++   +  +T  +  +   A  FP
Sbjct: 994  TKRKDLMAILTLEDYTQTVTAVVFP 1018


>gi|260550635|ref|ZP_05824844.1| DNA polymerase subunit III alpha [Acinetobacter sp. RUH2624]
 gi|260406346|gb|EEW99829.1| DNA polymerase subunit III alpha [Acinetobacter sp. RUH2624]
          Length = 1186

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/1017 (38%), Positives = 596/1017 (58%), Gaps = 57/1017 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + +++     D+ PA+A+TD +NL +A++F       GI+PI
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVKAAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + ++   +                  LL  +  G++ L E+VSR ++  +G+Q   
Sbjct: 63   LGSTIRLNDAQH---------------RATLLAMSDIGWKGLTEIVSRGFI--EGQQLSI 105

Query: 131  ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             C+   W+ E   + +++L  G    + +    ++ Q AE  L  + + FG+R+Y+ L R
Sbjct: 106  PCVQKEWVLEQHQDIIVLL--GQHSDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTR 163

Query: 189  HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                DR  E   +Q    LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   
Sbjct: 164  ---TDRAGEEDFIQEAAKLAAKYNIGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADDR 220

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-------I 296
            RPR+ +P+ + K   EM+ +FSD+P A+ENT  IA+RC+  L++    LP +       I
Sbjct: 221  RPRLYSPEQHFKTSDEMIELFSDIPSAIENTYHIAKRCNVSLKLGTYFLPEYPIPDGFTI 280

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            +   + + KE   E R   +  +E R       +    + Y +R+D+E+ +I +M F GY
Sbjct: 281  DTYFEHLSKEGLEE-RLNYLYPVEKRGEDWPEIR----KPYDERIDYEVGIILKMGFPGY 335

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 336  FLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMP 395

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ 
Sbjct: 396  DFDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRIS 455

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPS------VDRLLEISQKLEGLYRHASTHAA 530
            K++P  P       AI  + + ++  + +PS         + E++ KLEG+ R+   HA 
Sbjct: 456  KMVPTKPLGVDLATAIEMEPQLKDI-VTNPSNPDNDDASEIWEMALKLEGITRNTGKHAG 514

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VI    ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + 
Sbjct: 515  GVVIAPGKITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNIN 574

Query: 591  Q-RGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            + RG   +++S +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VS
Sbjct: 575  KNRGNDPLNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVS 634

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  + +R +G +    +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L 
Sbjct: 635  LYRPGPMDLIPDFIHRMHGGD-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLG 693

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAAA
Sbjct: 694  GADLLRRAMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAA 753

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+++Y TAW+K HYP EF+AA M+ EM N + +     D R   ++++PPSVN     F
Sbjct: 754  YALVAYHTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYHF 813

Query: 829  KVGDNR-IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLV 886
               D++ I Y L AIKGVG    + ++++   + P+  L DFC R+D KK+N+R LE+L+
Sbjct: 814  HASDDKTIVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALI 873

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSV 945
             AGALDC G  R  L+  L    + A+    NR +   ++F   E+        ++ +S 
Sbjct: 874  RAGALDCLGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKPAKPVKPWSD 933

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            E   VR + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+
Sbjct: 934  E---VRLKGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVL 987


>gi|126696251|ref|YP_001091137.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT
            9301]
 gi|126543294|gb|ABO17536.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT
            9301]
          Length = 1165

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/1055 (37%), Positives = 625/1055 (59%), Gaps = 50/1055 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  ++ I+D+       +IA+TD   ++  L+  +K    GI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQISKIVDRACDLGMESIALTDHGVMYGVLDLVKKCKEKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IIG ++ +       +      P P       +V+L     GY+ L++L +  +L     
Sbjct: 62   IIGNEMYV-------INGSIDDPQPKKEKRYHLVVLAKNYTGYKNLVKLTTISHLNGMRG 114

Query: 127  QSV--RICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            + +  R C+  S L +  ++GLI+ T    G I +A       VAE   L +KKLF D  
Sbjct: 115  RGIFSRPCIDKSLLSKY-SDGLIISTACLGGEIPQAILKGRLDVAEDIALWYKKLFADDF 173

Query: 183  YVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +Q H    DR    +++++   H++ ++ATN++ +LS  D EAHD L+ V    ++S
Sbjct: 174  YLEIQDHGSIEDRIVNVELIKIGKKHQIKVIATNDAHYLSNMDVEAHDALLCVLTGKLIS 233

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRF 295
             + R R T   Y+K+ +EM+ +F D      + EA+ NTVEI+++           +P+F
Sbjct: 234  DEKRLRYTGTEYIKSENEMLELFKDHIDDESIIEAVNNTVEISQKVEVFDLFGNYRMPKF 293

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
               E  D       +L NK   GL  RL +  + +    ++Y++RL  EL +I  M F  
Sbjct: 294  PLNEDTD-SFSFLTQLSNK---GLLKRLKKNDLTE--VDENYKKRLSSELKIIKDMGFPD 347

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+V D+I++A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP R SM
Sbjct: 348  YFLVVWDYIKFARDNSIPVGPGRGSAAGSLVAYALQITNIDPVEHGLLFERFLNPARKSM 407

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D DFC DRR+EVI YV N+YG ++VAQIITF  + +KA L+DV R L +PY + D+L
Sbjct: 408  PDIDTDFCIDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADKL 467

Query: 476  CKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             KLIP     P  L  + D +     FR+  + D  V + ++++ ++EG  +    HAAG
Sbjct: 468  AKLIPVVRGKPHKLNEMIDKNSPSQEFRDKYINDNRVKKWVDLALRIEGTNKTYGVHAAG 527

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI   PL +LVP+ R+    + +TQ++M  IE  GL+K DFLGLK LT+++K++  + Q
Sbjct: 528  VVIASDPLDELVPLQRNNEGQI-ITQYSMDDIESLGLLKMDFLGLKNLTMIEKTVSLINQ 586

Query: 592  R-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              G K+++  +P +D +T+ L+      GIFQLESSGM+Q ++  +P+ +EDI ++++LY
Sbjct: 587  STGRKINIDELPQNDGKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALY 646

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+D  ++  + NRKNG EKI   HP I  +L ET G+++YQEQ+M+IAQ L+GYSL 
Sbjct: 647  RPGPLDAGLIPKFINRKNGNEKIDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSLG 706

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            +AD+LRRAMGKK   EM K +  F+ G+ K G+++ +A ++F+ +  FA+Y FNKSH+ A
Sbjct: 707  DADLLRRAMGKKKVSEMVKHRNIFVDGSRKKGVNEKLANDLFDQMVLFAEYCFNKSHSTA 766

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y  ++YQTA++K H+PV ++AA +++   + +K++++  +     I+++ PS+N   VDF
Sbjct: 767  YGAVTYQTAFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMGIEVISPSINFSGVDF 826

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             + +N+I + L+AIK +G +  R+I+E  ++   F SL D C R+ S  LN+R LESL+ 
Sbjct: 827  TIKNNQILFGLSAIKNLGDSAIRNIIENRNSFGTFKSLSDLCDRLPSNILNKRSLESLIH 886

Query: 888  AGALDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG----TFSDKITLE 941
             GALD F    +R QLL  L+++ ++A    ++R +   N+F  +       FSD   L 
Sbjct: 887  CGALDEFSKDNNRAQLLSDLEHVVEWASSRNRDRLSGQGNLFDSKDEFSNVAFSDS-QLA 945

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLD-VYKP--ILRKMGIKGYEESVATIRGNNIRLA 998
            K    +   + + E+++LGFY S HPL  + KP  ++  + I   EE     +   + L 
Sbjct: 946  KVDDYSLIEKLKLEKQLLGFYLSDHPLKHLTKPAKLVSPISISQLEEIKDRTK---VSLV 1002

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             M+   +Q  TRKG R+  V   + +   EA  FP
Sbjct: 1003 GMIPDLKQITTRKGDRMAIVQLEDLSGSCEAIVFP 1037


>gi|312897946|ref|ZP_07757359.1| DNA polymerase III, alpha subunit [Megasphaera micronuciformis F0359]
 gi|310620980|gb|EFQ04527.1| DNA polymerase III, alpha subunit [Megasphaera micronuciformis F0359]
          Length = 1158

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/1036 (37%), Positives = 591/1036 (57%), Gaps = 35/1036 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YSL +G   +  ++ +      PA+A+TD  N++  +   + A   GI+PI
Sbjct: 4    FVHLHNHTQYSLFDGLTRIPEMVKRAKDLGMPAVAVTDHGNMYGLIHLYKAAKKEGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129
            +GC++ +      +  ++ +     +  ++LL     GYQ L+++VS+ ++   G+ S  
Sbjct: 64   LGCEIYMTRGSRFEQKSKER-----LCHLILLAKDFHGYQNLVKIVSKAFV--DGENSYH 116

Query: 130  --RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              R     L++   EGLI L+    G + +     +   A + L  F  LFG D  Y+ +
Sbjct: 117  RPRADFDLLEQY-HEGLIALSACIEGQVQQDILNGNEMQARQTLERFISLFGKDDFYLEI 175

Query: 187  QRHRGYDRYRESQVVQLAYTHE--LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            Q H G    RE + V   +  E  L LVATN+  +L ++D  A +V + ++  + +   +
Sbjct: 176  QNH-GLAEEREVRRVFKDWAEEYGLKLVATNDFHYLDKDDAPAQEVKLCISTGSTLDDPN 234

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              R + +  Y+K+R EM  +F DLPEAL+ T+EIA +C+  +      LP+F   + +  
Sbjct: 235  HFRFSNNEFYMKSREEMEKLFPDLPEALDTTLEIADKCNVEISFDERHLPQFPVPDGE-- 292

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               +E+ LR      L  R +    A        R+RLD+EL VI  M F  YFLIV D+
Sbjct: 293  --TDESYLRKLCEEALPTRYSVITDA-------VRERLDYELGVINAMGFPSYFLIVWDY 343

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+ + IPVGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R++MPD D+DFC
Sbjct: 344  VKYARDHKIPVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERITMPDIDMDFC 403

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + R  +I YV  KYG + VAQIITFG+L A+A LRDVGR L MP S+V+R+ K +PN+ 
Sbjct: 404  YENRSRIIDYVTRKYGKDHVAQIITFGTLAARAVLRDVGRVLDMPLSEVNRIMKTVPNEL 463

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A+     FR+       V RL++  ++LEGL RH+STHAAG+VI   P+   V
Sbjct: 464  GITLD-KALQTSKEFRKDYETKAEVRRLVDFGKRLEGLVRHSSTHAAGVVISAAPVDDYV 522

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602
            PM       L  TQ++   +E+ GL+K DFLGL+TLT++  ++  + +  G+ +D+  I 
Sbjct: 523  PMQYSKEGYL-TTQYDKDLVEELGLLKMDFLGLRTLTVIGDAVAMINRNYGIDLDIDKIS 581

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  T  LLT   T G+FQ+ES G+   ++ + P   E +I LV+LYRPGP+ + +V +
Sbjct: 582  LDDEATCRLLTEGDTAGVFQMESQGITNLVKELAPKHFEHMIPLVALYRPGPLGSGMVED 641

Query: 663  NRK--NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
              K  +G++K+  +HPL++P+LK+T GVI+YQEQVMQIA  + G+SL EAD+LRRAMGKK
Sbjct: 642  FIKGSHGEKKVTYLHPLLEPILKDTYGVILYQEQVMQIASAMGGFSLGEADLLRRAMGKK 701

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             +  +  Q+  F+ G  KN I   IA  +F+L+  FA YGFNKSH+AAYA +++QTA++K
Sbjct: 702  KEGVLKAQRAHFLEGTRKNHIDDDIANKVFDLMVYFAGYGFNKSHSAAYAYVAWQTAYLK 761

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HY  EF+AA+MT  + +V KI  +  + ++ ++ ++ P VN     F V    I + LA
Sbjct: 762  AHYCAEFMAATMTSMISDVAKISYYAAECKRHHVPVLSPDVNESESVFSVQGGNIRFGLA 821

Query: 841  AIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK VG    R I+EA   D PF S EDFCSRVDS+ +NRR LESL+  GA+D FG  R 
Sbjct: 822  GIKSVGENAIRTILEARKKDGPFTSFEDFCSRVDSRIVNRRGLESLIQCGAMDSFGKKRS 881

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            QL+  LD          K+  +    +F       S  +          S+R   E+   
Sbjct: 882  QLMAVLDQAMSMGALRRKDNESGQMGLFDDVVSDVSTDLVYPDMEEYPLSMRLAMEKEYD 941

Query: 960  GFYFSGHPLDVYKPILRKMGIKG--YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            GFYFSGHPLD Y  ++ K+      Y+E      G  I +  ++ + ++  T++   +  
Sbjct: 942  GFYFSGHPLDAYTEVMNKLTPLAVLYDEEARGYDGKMITVGGLITAVRRVTTKRNDAMAI 1001

Query: 1018 VTFSEPAKEYEANFFP 1033
            +T  +         FP
Sbjct: 1002 ITVEDFTHTVTVVVFP 1017


>gi|210621647|ref|ZP_03292734.1| hypothetical protein CLOHIR_00679 [Clostridium hiranonis DSM 13275]
 gi|210154667|gb|EEA85673.1| hypothetical protein CLOHIR_00679 [Clostridium hiranonis DSM 13275]
          Length = 1192

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/1068 (37%), Positives = 612/1068 (57%), Gaps = 69/1068 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G   +  ++ +       A+AITD   +F A++F + A A GI+P
Sbjct: 7    NFTHLHVHTEYSLLDGFSRVKTLVKRAKEKGMTAVAITDHGCMFGAIDFYKAAKAEGIKP 66

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++    +   K+T++          +VLL     GY+ LI++VS+ Y+ D      
Sbjct: 67   IIGCEVYTAPR---KLTDKDPNYDKHQGHLVLLAKDMVGYKNLIKIVSKSYV-DGFYYKP 122

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R  +  L++  ++GLI L+   +G + RA    +   A K  + ++ +FG+   Y+ +Q 
Sbjct: 123  RTDMDELKK-HSQGLIALSACLAGDVPRAIMNGNYDKARKLAMEYRDIFGNGNYYLEIQD 181

Query: 189  HRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H G    ++  ++VV+L+    +PLVATN+  ++ ++D +  D+LM +     +  ++R 
Sbjct: 182  H-GLPEQKQVNTEVVRLSRELNIPLVATNDVHYVDKDDAKIQDILMCLQMQKTIDDENRM 240

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +   D  YLK+R EM  +F +L EAL+NT EIA RC+   + H   LPR+   E      
Sbjct: 241  KFPSDEFYLKSREEMEQLFPELEEALDNTNEIAERCNVEFEFHKYHLPRYDVPE------ 294

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYFLIVAD 362
                        G    L Q  + + Y     ++Y++RL++ELN I  M +  YFLIV D
Sbjct: 295  -------GYTTNGYFRELCQKGLVERYGEDCPEEYKERLEYELNTIENMGYVEYFLIVWD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI +AK+NNI VGPGRGS AGS+ AY L ITDIDP+++SLLFERFLNP+R+SMPD DIDF
Sbjct: 348  FINFAKQNNIMVGPGRGSAAGSIVAYTLKITDIDPMKYSLLFERFLNPERVSMPDIDIDF 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR+EVI YV+ KYG + VAQIITFG++ AK A+RDV R L + Y++ D++ K IP +
Sbjct: 408  CYERREEVIDYVKRKYGEDHVAQIITFGTMGAKIAIRDVARVLNVSYNKADQIAKEIPFE 467

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+  +    E   +D     +++IS++LEG  RHASTHAAG+VI   P+ + 
Sbjct: 468  LGMTID-KAMDSNPTLVELYESDAEAREVIDISKRLEGTLRHASTHAAGVVIARNPVDEY 526

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVK-----V 596
            VP+Y+    D   TQF M  +E+ GL+K DFLGL+TLT+++ +LD +   R +K     +
Sbjct: 527  VPLYK--HQDSITTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIELNRDIKGYTEHI 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D S + +DD E +  L+   TLG+FQLESSGMR  ++ ++P+  EDI+A +SL+RPGP+D
Sbjct: 585  DFSKMEYDDDEVFETLSQGNTLGVFQLESSGMRNFMKQLKPNSFEDIVAGISLFRPGPMD 644

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +I  Y   KN  EK+  I+  + P+L+ T G ++YQEQVMQ+ + L+GYS   +D++RRA
Sbjct: 645  SIPTYIENKNNPEKVTYINDKLRPILEVTYGCLVYQEQVMQVVRDLAGYSYGRSDLVRRA 704

Query: 717  MGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKS 764
            M KK  + M+++++ FI             G  +NGIS+  A  IF+ +  FA Y FNKS
Sbjct: 705  MSKKKMDVMEEERQYFIHGKFDDEGNIEIPGCIRNGISEEDANKIFDDMIDFARYAFNKS 764

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAAAY V++Y+TA++K HYPVEF+AA MT  M N +K+ ++ ++     I + PP +N  
Sbjct: 765  HAAAYGVLAYETAYLKVHYPVEFMAALMTSIMGNSDKVVEYIRECNAIGIPVNPPDINKS 824

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLE 883
               F V  + I + LAA+K VG     +I+ E   +  F    DF  R+D+K  N+RV+E
Sbjct: 825  FSKFSVEGDSIRFGLAAVKNVGVNIIENIVKEREENGEFKDFVDFAKRLDTKDTNKRVVE 884

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---------AHEKGTF 934
            SL+  GA D    +R  L+   +++ +      K       ++F         A E    
Sbjct: 885  SLIKCGAFDQISENRATLMAGYESVLESISMDRKKNVQGQISLFDAFSTQVEEAPEMQLS 944

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL-RKMGI--------KGYEE 985
            ++   + +FS      R   E+ VLG Y SGHPL  YK  L RK  I        K  E+
Sbjct: 945  TNLPVVREFS---EKERLNMEKEVLGMYLSGHPLSEYKSELDRKTSINMKKINELKEDEK 1001

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +   +    + +  MV++K+   T++   + ++T  +     E   FP
Sbjct: 1002 TYMKLHDREVIMGGMVIAKRIMTTKRNEIMAFITLEDLYGTIEVVVFP 1049


>gi|225551916|ref|ZP_03772856.1| DNA polymerase III subunit alpha [Borrelia sp. SV1]
 gi|225370914|gb|EEH00344.1| DNA polymerase III subunit alpha [Borrelia sp. SV1]
          Length = 1161

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/976 (41%), Positives = 595/976 (60%), Gaps = 38/976 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  AGI+PI
Sbjct: 21  FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80

Query: 71  IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IG +  +        K  + GK  +     ++LL     GY+ L++L S  YL +     
Sbjct: 81  IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+ LQR
Sbjct: 136 PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194

Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           H  +  D   E  V    Y+ EL  PL A N+S +++ ED  A D+++ +      S ++
Sbjct: 195 HGIKDQDIVNERLV---KYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 251

Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301
           R ++ T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E +
Sbjct: 252 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 311

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            + +     L +  + GL+ R               + R  +EL+VI  M F GYFLIV 
Sbjct: 312 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 360

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+
Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+ 
Sbjct: 481 GPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600
            VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +  R V  D  + 
Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIK 596

Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I 
Sbjct: 597 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 656

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK
Sbjct: 657 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 716

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++
Sbjct: 717 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 776

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
           K +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L
Sbjct: 777 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 836

Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R
Sbjct: 837 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 896

Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956
             L ++LD + +     + N+     ++F     +         + F   + S     E+
Sbjct: 897 KTLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIRQSFNYQAFKEYSYSELLGFEK 956

Query: 957 RVLGFYFSGHPLDVYK 972
            +LGFY SGHPLD YK
Sbjct: 957 ELLGFYVSGHPLDPYK 972


>gi|295105629|emb|CBL03173.1| DNA polymerase III catalytic subunit, DnaE type [Faecalibacterium
            prausnitzii SL3/3]
          Length = 1169

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/1046 (36%), Positives = 597/1046 (57%), Gaps = 42/1046 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  ++ +++++    Q AIA TD   ++  ++F + A  AGI+PI
Sbjct: 11   FAHLHIHTEYSLLDGACRIDQLMERVKECGQTAIACTDHGVMYGCVQFYKAAKKAGIKPI 70

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +      N+          ++LL     GY+ LI++VS  ++  +G  S  
Sbjct: 71   IGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLIKMVSAGFV--EGFYSKP 124

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L E   EGLI L+   +G I +A      + A+   L ++ LFG +  Y+ LQ H
Sbjct: 125  RVDKQLLEQYHEGLICLSACLAGEIPQAILAGDYERAKATALWYRDLFGAENYYIELQDH 184

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                D     Q+++L+    +P+ ATN++ +L +ED +   +L+ +     +   DR   
Sbjct: 185  GLKEDTTVLPQLIKLSRETGIPMAATNDAHYLRKEDAKMQSILLCIQTGKTIQDADRMEF 244

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  Y+K   EM  +FS +PEA  NT +IA +C+F  +     +P +   +  D Q   
Sbjct: 245  QTDEFYVKTTDEMYELFSMVPEACANTAKIAEQCNFDFEFGHTKIPYYKAPDGMDNQAYF 304

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E    +    GLE R            Q    RL +E+ V+  M ++ Y+LIV D+I +A
Sbjct: 305  EKLCWD----GLERRYGPDV------PQANIDRLKYEIGVVKTMGYTNYYLIVWDYINFA 354

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K   IPVGPGRGSGAGS+ AY + ITDIDP+R++L+FERFLNP+R+SMPDFD+DFC +RR
Sbjct: 355  KSQGIPVGPGRGSGAGSIAAYCVGITDIDPIRYNLIFERFLNPERVSMPDFDVDFCYERR 414

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + VAQI+TFG++ A+ A+RDVGR + +PY QVD + KL+P +    +
Sbjct: 415  QEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGIPYQQVDVVAKLVPMELKMTL 474

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+   S  ++    DP V  L++ + K+EG+ RHASTHAAG+VI   P    +P+  
Sbjct: 475  K-RALEVSSELKKLYDTDPQVTELIDTALKVEGMPRHASTHAAGVVITPEPTDYYLPLAT 533

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            +    LPVTQFNM  IE+ GL+K DFLGL+TLT+++ +   + ++  +  +  + +DD +
Sbjct: 534  N--DGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIRDAETAVQKQHPEFSIRKLDYDDPD 591

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L    T G+FQLESSGM+Q L G+QP  +ED+IAL+SLYRPGP+D+I  Y   ++ 
Sbjct: 592  TYKMLGQGDTEGVFQLESSGMKQVLVGLQPQNLEDVIALISLYRPGPMDSIPTYLRNRHE 651

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             +KI    P +  +L  T G I+YQEQVMQI + L+G+S  +AD +RRAM KK    M+ 
Sbjct: 652  PDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRAMSKKKHAVMEA 711

Query: 728  QKERFISGASK----------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            ++E F+ G ++          NGI + +A  I++ ++ FA Y FNKSHAA YA +++QTA
Sbjct: 712  EREHFVHGCTEPGHECPGCVANGIPEQVANQIYDEMSSFASYAFNKSHAACYAYVAFQTA 771

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIY 836
            ++K HYP +F+AA +T  +DN +K+ ++  +  +  I+++PP VN     F   DN +I 
Sbjct: 772  YLKCHYPSQFMAALLTSVLDNTDKVIEYSGECARLGIKVLPPDVNISNGGFTADDNGQIR 831

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            + L A+K VG     + +    +KP+ SL DFC R+   +LNRR +ESL+ AGA DCFG 
Sbjct: 832  FGLNAVKNVGRNLIENAVTERKEKPYTSLYDFCKRMHGSELNRRAVESLIKAGAFDCFGS 891

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-----SDKITLEKFSVENSSVR 951
            +R  ++++++ I K  +   +       ++F+   G        D   +   +    +  
Sbjct: 892  NRHSMVEAVEGILKSIETDSRRNLEGQLDLFSVMSGEVQQSPQEDVYEIRPLAEYTPAEL 951

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMG---IKGYEESVATIR-GNNIRLAAMVVSKQQK 1007
             + E+ V G Y SGHPLD Y+    ++G   IK      A ++ G  +R+   VV  +  
Sbjct: 952  LQQEKEVSGLYLSGHPLDAYREKSARIGSHTIKDLTGEDAHVQDGEKVRIVCAVVKNRMM 1011

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+  S + + +  +     E   FP
Sbjct: 1012 TTKSNSMMAFTSVEDLTGTMEVIVFP 1037


>gi|216264846|ref|ZP_03436838.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 156a]
 gi|215981319|gb|EEC22126.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 156a]
          Length = 1161

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/976 (41%), Positives = 595/976 (60%), Gaps = 38/976 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  +GI+PI
Sbjct: 21  FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKSGIKPI 80

Query: 71  IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IG +  +        K  + GK  +     ++LL     GY+ L++L S  YL +     
Sbjct: 81  IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+ LQR
Sbjct: 136 PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194

Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           H  +  D   E  V    Y+ EL  PL A N+S +++ ED  A D+++ +      S ++
Sbjct: 195 HGIKDQDIVNERLV---NYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 251

Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301
           R ++ T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E +
Sbjct: 252 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 311

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            + +     L +  + GL+ R               + R  +EL+VI  M F GYFLIV 
Sbjct: 312 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 360

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+
Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+ 
Sbjct: 481 GPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600
            VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +  R V  D  + 
Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIK 596

Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I 
Sbjct: 597 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 656

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK
Sbjct: 657 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 716

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++
Sbjct: 717 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 776

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
           K +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L
Sbjct: 777 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 836

Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R
Sbjct: 837 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 896

Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956
             L ++LD + +     + N+     ++F     +         + F   + S     E+
Sbjct: 897 KTLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEK 956

Query: 957 RVLGFYFSGHPLDVYK 972
            +LGFY SGHPLD YK
Sbjct: 957 ELLGFYVSGHPLDPYK 972


>gi|257439793|ref|ZP_05615548.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
            A2-165]
 gi|257197702|gb|EEU95986.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
            A2-165]
          Length = 1171

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/1045 (37%), Positives = 593/1045 (56%), Gaps = 41/1045 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSLL+GA  ++ ++D++    Q AIA TD   ++  ++F + A  AGI+PI
Sbjct: 14   FVHLHIHTEYSLLDGACRIDQLMDRVKECGQTAIACTDHGVMYGCVQFYKAAKKAGIKPI 73

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +      N+          ++LL     GY+ L +LVS  ++  +G  S  
Sbjct: 74   IGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLAKLVSAAFI--EGFYSKP 127

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
                 L E   EGLI L+   +G I +A      + A+   L ++ LFG+   Y+ LQ H
Sbjct: 128  RVDKQLLEQYHEGLICLSACLAGEIPQAILSGDYERAKASALWYRDLFGEGNYYIELQDH 187

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                D     Q+++LA    +P+ ATN+S +L +ED +   +L+ +     +   DR   
Sbjct: 188  GLEEDNIVLPQLIKLARETGIPMAATNDSHYLRKEDAKMQAILLCIQTGKTMQDADRMEF 247

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  Y+K   EM  +F+ +P+A  NT  IA +C+F  +     +P +      D Q   
Sbjct: 248  QTDEFYVKTTDEMYDLFAMVPDACANTRIIADQCNFDFEFGNTKIPYYKAPGGMDNQAFF 307

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E         GLE R            Q  + RL++E++VI  M ++ Y+LIV D++ +A
Sbjct: 308  EK----LCWEGLERRYGSNV------PQANKDRLNYEISVIKTMGYTNYYLIVWDYVNYA 357

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K   IPVGPGRGSGAGS+ AY++ ITDIDP+R++L+FERFLNP+R+SMPDFD+DFC +RR
Sbjct: 358  KSQGIPVGPGRGSGAGSIAAYSVGITDIDPIRYNLIFERFLNPERVSMPDFDVDFCYERR 417

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + VAQI+TFG++ A+ A+RDVGR + MPY +VD + K +P +    +
Sbjct: 418  QEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGMPYQEVDVVAKQVPAELKMTI 477

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A+      R     DP V  LL+ + K+EG+ RHASTHAAG+VI   P    +P+  
Sbjct: 478  K-HALEVSPELRRMYETDPKVTELLDTAMKVEGMPRHASTHAAGVVITPEPTDYYLPLAT 536

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            +    LPVTQFNM  IE+ GL+K DFLGL+TLT+++ +   + ++     ++ + +DD E
Sbjct: 537  N--DGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIRDAELAIQKKEPDFSIAKLDYDDPE 594

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L+   T G+FQLESSGM+Q L G+QP  +ED+IAL+SLYRPGP+D+I  Y   ++ 
Sbjct: 595  TYKMLSRGETEGVFQLESSGMKQVLVGLQPQNLEDVIALISLYRPGPMDSIPTYLRNRHE 654

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             +KI    P +  +L  T G I+YQEQVMQI + L+G+S  +AD +RRAM KK    M+ 
Sbjct: 655  PDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRAMSKKKHAVMEA 714

Query: 728  QKERFISGAS----------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            ++E F+ G +           NGIS+ IA  I++ ++ FA Y FNKSHAA YA +++QTA
Sbjct: 715  EREHFVHGCTDPGNECPGCVANGISEKIANEIYDEMSSFASYAFNKSHAACYAYVAFQTA 774

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIY 836
            ++K HYP EF+AA +T  +DN  K+ ++  +  +  I+++PP +N     F   D+ RI 
Sbjct: 775  YLKCHYPSEFMAALLTSVLDNTGKVIEYSGECARLGIKVLPPDINISGSGFTAEDSGRIR 834

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            + L A+K VGT      +E   +KP+ SL DFC R+   +LNRR +ESL+ AGA D  G 
Sbjct: 835  FGLNAVKNVGTRLIERSVEERQEKPYTSLYDFCKRMHGTELNRRTVESLIKAGAFDNLGS 894

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT----FSDKITLEKFSVENSSVRF 952
            +R  L+++ + + K  +   +   +   ++F+   GT     +D   ++       +   
Sbjct: 895  NRRSLVEATEGVLKSIESDSRKNLDGQIDLFSMMSGTDNTSAADSYEIKPCPEYTHAELL 954

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMG---IKGYEESVATIRGN-NIRLAAMVVSKQQKK 1008
            + E+ V G Y SGHPLD Y+    +     IK      A +  N ++R+   +V  +   
Sbjct: 955  QQEKEVSGLYLSGHPLDAYREQSAQFATHTIKALTGEDANVPDNSHVRIVCTIVKSKMVT 1014

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T+  S + + +  +     E   FP
Sbjct: 1015 TKTNSMMAYTSVEDLTGTMEVIVFP 1039


>gi|262278808|ref|ZP_06056593.1| DNA polymerase subunit III [Acinetobacter calcoaceticus RUH2202]
 gi|262259159|gb|EEY77892.1| DNA polymerase subunit III [Acinetobacter calcoaceticus RUH2202]
          Length = 1187

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/1018 (38%), Positives = 593/1018 (58%), Gaps = 58/1018 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + ++++    DQ PA+A+TD +NL +A++F       GI+P+
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNSCLKKGIKPL 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + +D   +                + LL  +  G++ L E+VSR ++  +G+Q   
Sbjct: 63   LGSIIRLDDAQH---------------RVTLLAMSDIGWKSLTEIVSRGFI--EGQQLSI 105

Query: 131  ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             C+   W+ E   + +++L  G    + +    ++ Q A   L  + + FG+R+Y+ L R
Sbjct: 106  PCVQKEWVLEQHQDIIVLL--GQHSDVGQMLCSSNPQKAAPLLEAWLEKFGNRVYLALTR 163

Query: 189  HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                DR  E   +Q    LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   
Sbjct: 164  T---DRPGEEDFIQEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADNR 220

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RPR  +P+ + K   EM+ +FSD+P A+ENT  IA+RC+  LQ+    LP +   +   I
Sbjct: 221  RPRTYSPEQHFKTSDEMIELFSDIPSAIENTYHIAKRCNVKLQLGTYFLPDYPIPDGFTI 280

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARMKFSGY 356
                +    + +  GLE RL      +    +D       Y +R+D+E+ +I +M F GY
Sbjct: 281  ----DTYFEHLSKVGLEERLNYLYPVEK-RGEDWLEIRKPYDERIDYEVGIILKMGFPGY 335

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 336  FLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMP 395

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ 
Sbjct: 396  DFDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRIS 455

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPS------VDRLLEISQKLEGLYRHASTHAA 530
            K++P  P       AI  + + ++  + +PS         + E++ KLEG+ R+   HA 
Sbjct: 456  KMVPTKPLGVDLATAIDMEPQLKDI-VTNPSNPDNDDASEIWEMALKLEGVTRNTGKHAG 514

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VI    ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + 
Sbjct: 515  GVVIAPGKITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNIN 574

Query: 591  QR---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            +      ++++  +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA V
Sbjct: 575  KNRDSNDQLNILNVPLDDAKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFV 634

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            SLYRPGP+D I  + +R +G +    +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L
Sbjct: 635  SLYRPGPMDLIPDFIHRMHGGD-FEYLHPLLEGVLEPTYGIMVYQEQVMQAAQICAGYTL 693

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ++ F+ GA++ GI ++ A +IF+ + KFA YGFNKSHAA
Sbjct: 694  GGADLLRRAMGKKKPEEMVKQRQIFLEGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAA 753

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA+++Y TAW+K HYP EF+AA MT EM N + +     D R  NI ++PPSVN     
Sbjct: 754  AYALVAYHTAWLKAHYPAEFMAAVMTSEMQNTDSVVFLIDDCRNNNIDVLPPSVNMSTYH 813

Query: 828  FKVGDNR-IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
            F   +++ I Y L AIKGVG    + ++++     P+  L DFC R+D KK+N+R LE+L
Sbjct: 814  FHASNDKTIVYGLGAIKGVGEQAMQSVIDSRRQYGPYTDLFDFCHRIDLKKINKRTLEAL 873

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFS 944
            + AGALDC G  R  L+  L    + A+    NR +   ++F   E+        ++ +S
Sbjct: 874  IRAGALDCLGIERASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKPAKPVKPWS 933

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             E   VR + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+
Sbjct: 934  DE---VRLKGEKDTLGLYLTGHPIDVYRQELKAFIPVKLNEITATRRGVTTVYAGLVI 988


>gi|224532747|ref|ZP_03673364.1| DNA polymerase III subunit alpha [Borrelia burgdorferi WI91-23]
 gi|224512365|gb|EEF82749.1| DNA polymerase III subunit alpha [Borrelia burgdorferi WI91-23]
          Length = 1161

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/976 (41%), Positives = 595/976 (60%), Gaps = 38/976 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  +GI+PI
Sbjct: 21  FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKSGIKPI 80

Query: 71  IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IG +  +        K  + GK  +     ++LL     GY+ L++L S  YL +     
Sbjct: 81  IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+ LQR
Sbjct: 136 PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194

Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           H  +  D   E  V    Y+ EL  PL A N+S +++ ED  A D+++ +      S ++
Sbjct: 195 HGIKDQDIVNERLV---NYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 251

Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301
           R ++ T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E +
Sbjct: 252 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 311

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            + +     L +  + GL+ R               + R  +EL+VI  M F GYFLIV 
Sbjct: 312 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 360

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+
Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+ 
Sbjct: 481 GPK--VSLKEVLDDNFLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600
            VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +  R V  D  + 
Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RNVNPDFKIK 596

Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I 
Sbjct: 597 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 656

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK
Sbjct: 657 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 716

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++
Sbjct: 717 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 776

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
           K +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L
Sbjct: 777 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 836

Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R
Sbjct: 837 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 896

Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956
             L ++LD + +     + N+     ++F     +         + F   + S     E+
Sbjct: 897 KTLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEK 956

Query: 957 RVLGFYFSGHPLDVYK 972
            +LGFY SGHPLD YK
Sbjct: 957 ELLGFYVSGHPLDPYK 972


>gi|34496366|ref|NP_900581.1| DNA-directed DNA polymerase III subunit alpha [Chromobacterium
            violaceum ATCC 12472]
 gi|34102219|gb|AAQ58585.1| DNA-directed DNA polymerase III, alpha subunit [Chromobacterium
            violaceum ATCC 12472]
          Length = 1144

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/1042 (37%), Positives = 593/1042 (56%), Gaps = 43/1042 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL++HS +S+ +G + L++ + + A +Q PA+ ++D  NLF  ++F +     GI
Sbjct: 3    APRFVHLRLHSEFSITDGIVRLDDAVKRAAKEQMPALGVSDLMNLFGMVKFYKSCRNKGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+   + ++ +++         P+     ++L     EGY+RL EL++  +  +Q + 
Sbjct: 63   KPIVSADIWLENEEDRD------KPY----RLMLTAKNREGYRRLCELLTEAFSHNQYRG 112

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I  +WL       L+ L+G   G +  A        A +R   ++ LF    Y+ +Q
Sbjct: 113  RAEIKRAWLASGDNSNLLCLSGAHLGDVGIALSMGQRDEARRRAEYWESLFPGAFYLEIQ 172

Query: 188  RHRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            R    D  +   VVQ    LA    LP+VAT+   F+ +ED++AH+  + +A    +  K
Sbjct: 173  R---VDSAQVENVVQATLWLAGETGLPVVATHPIQFMEKEDFKAHEARVCIAEGYTLGDK 229

Query: 244  DRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR   +  Y  +  +MV  F+D+PEAL NTVEIA+RC+  + +    LP F   +   
Sbjct: 230  RRPRSFSECQYFLSAEQMVERFADIPEALANTVEIAKRCNISVVLGKNYLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L ++A  GLE RL Q       +     DY  RL FE + I +M F GYFLI
Sbjct: 290  L----DDFLVHEAKRGLEERLKQLYPDEAERQEKRPDYDARLKFECDTIIQMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFIQW K N  PVGPGRGSGAGS+ AY+L+ITD+DPL+++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFIQWGKANGCPVGPGRGSGAGSLVAYSLSITDLDPLKYALLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFCQ+ R  VI Y + KYG E V+QI TFG++ +K+ +RDVGR L +P+   DRL KLI
Sbjct: 406  VDFCQENRWRVIEYTRRKYGEEAVSQIATFGTMSSKSVIRDVGRVLDLPFGLCDRLSKLI 465

Query: 480  PNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P +   P+SL+ A+  + +  E  +       L+E++  LE L R    HA G++I    
Sbjct: 466  PLEANKPLSLEKAMQVEPQIGEI-IESEGAQELIELAMTLEDLTRGIGMHAGGVLIAPGR 524

Query: 539  LSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596
            L+   P+Y        PV+QF+   +E+ GL+KFDFLGL+ LT+++ +  ++    G  V
Sbjct: 525  LTDFCPLYIASGDGASPVSQFDKDDVEQIGLVKFDFLGLRNLTIIELAQKYIKDLTGEDV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ +P DD   Y +  T  T  +FQ ES+GM++ L   +P   E+IIA V+LYRPGP+D
Sbjct: 585  DVAHLPLDDKPAYKVFATANTTAVFQFESTGMKKMLVEAKPSKFEEIIAFVALYRPGPMD 644

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I  +  R +G  K   +HPL++P+L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRA
Sbjct: 645  LIPDFIQRMHGA-KFEYLHPLLEPVLAPTYGIMVYQEQVMQSAQVIGGYSLGGADLLRRA 703

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  EEM  Q+  F+ GA+K  I +  A  IF+ + KFA YGFNKSHAAAYA+++Y T
Sbjct: 704  MGKKKVEEMVAQRAMFVQGAAKQDIPEAKANEIFDYMEKFAGYGFNKSHAAAYALVAYHT 763

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKF---CQDARQFNIQIMPPSVNTPCVDF-KVGD 832
            AW+K H+   ++AA+M+ E+DN +++K F   CQD +   +  +PP VN     F  V  
Sbjct: 764  AWLKAHHCAAYMAATMSTELDNTDQLKVFYDDCQDPKN-GVTFLPPDVNHGFYRFVPVSR 822

Query: 833  NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I Y+L AIKG G +   HI+E   A  PF  L DFC R D K +N+RV+E+L+ AGA 
Sbjct: 823  KEIRYALGAIKGTGESAVNHIVEVREAGGPFTDLFDFCKRTDKKLVNKRVIEALIRAGAF 882

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEKGTFSDKITLEKFSVENSSV 950
            D    +R  L     N+    +  E+   N ++  +F       +  + +      + +V
Sbjct: 883  DAIEPNRALLFA---NVGLAMEAAEQAHANANQGGLFDMFGDDVAPAVEMAATRPWSDAV 939

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            +   E+  +GFY S HP   Y+  +R  G      S  T R     LA  V   + K   
Sbjct: 940  KLAEEKLAIGFYLSDHPFSAYEKEVR--GFIKTTLSRLTPRKEPQLLAGFVTGIRVKVGN 997

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G ++ +V   +   + E + F
Sbjct: 998  RG-KMAFVQLDDGTAKLEVSLF 1018


>gi|187250629|ref|YP_001875111.1| DNA polymerase III subunit alpha [Elusimicrobium minutum Pei191]
 gi|186970789|gb|ACC97774.1| DNA polymerase III, alpha subunit [Elusimicrobium minutum Pei191]
          Length = 1167

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/1055 (37%), Positives = 622/1055 (58%), Gaps = 76/1055 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLN-----NILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            FVHL  HS YSLL+G L L+       L ++AAD   A+AITD  N++ A++F + A AA
Sbjct: 3    FVHLHNHSEYSLLDGMLRLSEKGPSKFLKQVAADGFKAMAITDHGNMYGAMDFYKNAAAA 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIGC+  I    N    N+ K    T   + LL    EGYQ L+ L+S+ +L D  
Sbjct: 63   GIKPIIGCEAYIT---NGSHKNKEKGLDKTF-HLTLLAKDYEGYQNLMALISKAWL-DGF 117

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYV 184
                RI    L +   +G++ L+G   G + +     +   A +   T++ + G    Y+
Sbjct: 118  YYHPRIDKDILAQ-HAKGIMALSGCLKGEVSQELLNGTFAQACEYAKTYESILGKGNYYI 176

Query: 185  NLQRHRGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             L  H       E Q++     +++ +  +P+VATN+  +  +ED++AHD+ M ++    
Sbjct: 177  ELMDHG----IEEEQIILPKLIEVSKSTGIPVVATNDCHYEKQEDWQAHDIHMCISMGKT 232

Query: 240  VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +   +R +  T + Y K+  EM  +FS +PEA+ NT+E+A +C+ ++     +LP F   
Sbjct: 233  LDDPNRLKSSTHELYFKSAQEMAELFSYIPEAVSNTLEVAEKCNVVMPKSGFVLPVF--- 289

Query: 299  ECDDIQ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
               DI     + ++ ++N    GL  +++      G    +Y++RLD+EL VI +M FS 
Sbjct: 290  ---DIPPSFSDTDSYIKNLCQEGLAKKMS------GIIPPNYQERLDYELGVIGKMGFSS 340

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI +A++N+IPVGPGRGSGAGS+ AY+L IT +DP++  LLFERFLNPDR+SM
Sbjct: 341  YFLIVADFIDYARQNHIPVGPGRGSGAGSIVAYSLNITKVDPIKNGLLFERFLNPDRLSM 400

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD DIDF  + R++VI YV+NKYG   VAQIITFG+++AK A++DV R L +P S+ +R+
Sbjct: 401  PDLDIDFSDEGREQVINYVRNKYGETNVAQIITFGTMKAKMAVKDVARVLNIPVSESNRI 460

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KLIPND    +   AI      ++   ++P   +L + ++KLEGL RHA  HAAGIV+ 
Sbjct: 461  TKLIPNDLGTTID-SAIETVKELKQEIASNPQTAKLFDFAKKLEGLKRHAGIHAAGIVVT 519

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWI-EKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
               +S+  P+ R  +  +  TQ+    + +  GL+K DFLGL+TLT++  ++D +   RG
Sbjct: 520  REEVSKYAPLARGSKEAI-TTQYEGGILADDLGLLKIDFLGLRTLTIIDNAVDIIKNMRG 578

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            + +D+  IP D+ +TY LL++  TLGIFQLES GMR  ++ ++P    DI ALV+LYRPG
Sbjct: 579  IDIDIDNIPLDNKKTYELLSSAKTLGIFQLESGGMRDLVKRLKPSEFSDISALVALYRPG 638

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+++ ++  +  RK G+EKI    PL++P+LKET G ++YQEQ+M++++LL G++  +AD
Sbjct: 639  PMESGMLESFVRRKAGQEKITYDTPLMEPVLKETYGTMVYQEQIMELSKLLGGFTPGQAD 698

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             LR+AMGKK  +EM+K +  F++G +   I+   A  IFE ++KFA YGFNKSH+ AYA+
Sbjct: 699  SLRKAMGKKKVDEMEKARVNFVNGCAGKKINPKTADKIFEQMSKFAGYGFNKSHSVAYAL 758

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEM--------DNVEKIKKFCQDARQFNIQIMPPSVNT 823
            +SYQTA++K +YP+EF+ + +T E+        D   KI  + ++A++   + + P VN 
Sbjct: 759  VSYQTAYLKANYPIEFMCSLLTNEIGHNAIGSDDKENKIVTYIEEAKKMGFETLGPDVNH 818

Query: 824  PCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +F +    G   I + L A+K VGT  A  I+ A  D+P+   +D   R+D K  N+
Sbjct: 819  SKENFSIEEVNGKEIIRFGLEAVKNVGTEAAASIVSARGDRPYCGFQDLLERIDLKASNK 878

Query: 880  RVLESLVFAGALDCF------GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            + +ESL+ AGALD          +R  +L  ++++ +    +++ + +   ++F  +   
Sbjct: 879  KTIESLIKAGALDSLIPGKTPNSARAVMLAEMEDMLEITAKIKEEKESSICSLFGEDSSA 938

Query: 934  FSDKITLEKFSVENSSVRFENEQ------RVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
            F   ++++K   + +    + EQ       VLGFY SGHPL  YK  + K+     EE  
Sbjct: 939  F---VSVKKKETKTAPRPLKQEQLLEMEKEVLGFYNSGHPLAKYKKHMDKIKSVTIEE-- 993

Query: 988  ATIRGNNIRLAAMVVS--KQQKKTRKGSRIGWVTF 1020
              I  NNI+ A  ++    + KK +   +  W  F
Sbjct: 994  --INENNIKGAVNILGIITRVKKRQNKRKEDWAQF 1026


>gi|78779238|ref|YP_397350.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT
            9312]
 gi|78712737|gb|ABB49914.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT
            9312]
          Length = 1165

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1056 (37%), Positives = 622/1056 (58%), Gaps = 54/1056 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+ L  HS YSLL+GA  ++ I+D+       +IA+TD   ++  L+  +K    GI+PI
Sbjct: 3    FIPLHNHSDYSLLDGASQISKIVDRACELGMDSIALTDHGVMYGVLDLVKKCKEKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IG ++ +       +      P P       +V+L     GY+ L++L +  +L     +
Sbjct: 63   IGNEMYV-------INGSIDDPQPKKEKRYHLVVLAKNRTGYKNLVKLTTISHLNGMRGR 115

Query: 128  SV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +  R C+  +L    +EGLI+ T    G I +A       VAE   L +K LF D  Y+
Sbjct: 116  GIFSRPCIDKFLLSKYSEGLIISTACLGGEIPQAILKGRLDVAEDIALWYKNLFADDFYL 175

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +Q H    DR    +++++   H++ ++ATN++ +LS  D EAHD L+ V    ++S +
Sbjct: 176  EIQDHGSIEDRIVNIELLRIGKKHQIKVIATNDAHYLSNMDVEAHDALLCVLTGKLISDE 235

Query: 244  DRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIE 297
             R R T   Y+K+ +EM+ +F D      + EA+ NTVEI+++           +P+F  
Sbjct: 236  KRLRYTGTEYIKSENEMLELFKDHIDDESIKEAVNNTVEISQKIEVFDLFGKYRMPKFPL 295

Query: 298  KECDD---IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
             E  D   +  +  NE       GL  RL +  + +    ++Y++RL  EL +I  M F 
Sbjct: 296  NEDTDSFSLLTQLSNE-------GLLKRLKKNTLTE--VDENYKKRLSSELKIIKDMGFP 346

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFL+V D+I++A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP R S
Sbjct: 347  DYFLVVWDYIKFARDNSIPVGPGRGSAAGSLVAYALQITNIDPVEHGLLFERFLNPARKS 406

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD D DFC DRR+EVI YV N+YG ++VAQIITF  + +KA L+DV R L +PY + D+
Sbjct: 407  MPDIDTDFCIDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADK 466

Query: 475  LCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            L KLIP     P  L  + D +     FR+  + D  V + ++++ ++EG  +    HAA
Sbjct: 467  LAKLIPVVRGKPHKLNEMIDKNSPSQEFRDKYINDNRVKKWIDLALRIEGTNKTYGVHAA 526

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VI   PL +LVP+ R+    + +TQ++M  IE  GL+K DFLGLK LT+++K++  + 
Sbjct: 527  GVVIASDPLDELVPLQRNNEGQI-ITQYSMDDIESLGLLKMDFLGLKNLTMIEKTVSLIN 585

Query: 591  QR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            Q  G  +++  +P +D +T+ L+      GIFQLESSGM+Q ++  +P+ +EDI ++++L
Sbjct: 586  QSTGKTINIDNLPQNDDKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILAL 645

Query: 650  YRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            YRPGP+D  ++  + NRKNG EK+   HP I  +L ET G+++YQEQ+M+IAQ L+GYSL
Sbjct: 646  YRPGPLDAGLIPKFINRKNGNEKVDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSL 705

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             +AD+LRRAMGKK   EM K +  F+ G+ K G+++ +A ++F+ +  FA+Y FNKSH+ 
Sbjct: 706  GDADLLRRAMGKKKVSEMVKHRNIFVDGSMKKGVNEKLANDLFDQMVLFAEYCFNKSHST 765

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AY  ++YQTA++K H+PV ++AA +++   + +K++++  +     I+++ PS+N   +D
Sbjct: 766  AYGAVTYQTAFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMGIEVISPSINFSGID 825

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLV 886
            F + +N+I + L+AIK +G +  R+I+E   +   F SL D C R+ S  LN+R +ESL+
Sbjct: 826  FTIKNNQILFGLSAIKNLGDSAIRNIIENRNNSGSFKSLSDLCDRLPSNVLNKRSIESLI 885

Query: 887  FAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG----TFSDKITL 940
              GALD F    +R QLL  L+++ ++A    ++R +   N+F  ++      FSD   L
Sbjct: 886  LCGALDEFSNNNNRAQLLSDLEHVIEWASSRNRDRLSGQGNLFDSKEEFSNVAFSDS-QL 944

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLD-VYKP--ILRKMGIKGYEESVATIRGNNIRL 997
             K    +   + + E+++LGFY S HPL  + KP  ++  + +   EE+    +   + L
Sbjct: 945  AKVDDYSLIDKLKLEKQLLGFYLSDHPLKHLTKPAKLVSPISVSQLEETKDRTK---VSL 1001

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              M+   +Q  TRKG R+  V   + +   EA  FP
Sbjct: 1002 VGMIPELKQITTRKGDRMAIVQLEDLSGSCEAIVFP 1037


>gi|239946850|ref|ZP_04698603.1| DNA polymerase III, alpha subunit family [Rickettsia endosymbiont
           of Ixodes scapularis]
 gi|239921126|gb|EER21150.1| DNA polymerase III, alpha subunit family [Rickettsia endosymbiont
           of Ixodes scapularis]
          Length = 1245

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/862 (42%), Positives = 530/862 (61%), Gaps = 54/862 (6%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P F+HL+  SSYS LE AL++  +++  ++++  AI + D  NLF +LEF+  A   G+Q
Sbjct: 3   PEFIHLRTQSSYSFLESALTIEKVVELASSNKMSAICLADKGNLFGSLEFALYAVKKGLQ 62

Query: 69  PIIGCQLDIDM----------QDNLKMTNQGKTPF--------------------PTVPS 98
           PI G  L+I            QD  K     +T                           
Sbjct: 63  PIHGVILNIKYNIQHHSASFRQDEFKSKPAERTKVREQRLDSKNSLVSSLLNDAGDIFAQ 122

Query: 99  IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
           I+L+     GY+ L++L S  +  +  K    I    L E   EGLI L   + G + + 
Sbjct: 123 ILLIAKDETGYKNLLKLSSLTFTKNDRKICDHIDFEDLIEY-QEGLIALCCYTDGIVGKC 181

Query: 159 FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNS 217
               + + A       +++ GDR Y  + RH    +++ E   +++A    +PLVATN  
Sbjct: 182 LLARNEEQAMLFARKLQEILGDRFYFEIMRHDLPEEQFIEDSYIRIAAELAIPLVATNKV 241

Query: 218 LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           LF  +  ++AHDVL+ ++        DR  V+ + Y ++  EM+ +FSDLP A++NTV +
Sbjct: 242 LFSEKSMHDAHDVLLCISAGVTKEYPDRKTVSENCYFRSPHEMIELFSDLPSAIQNTVNL 301

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ-- 335
             RC F    + P+LP F  K+       E + +R  A  GL  RLA    ++    +  
Sbjct: 302 RERCYFAAHANPPMLPNFATKDIS-----ETDLIRKDAKEGLLARLATKFKSENISLENQ 356

Query: 336 -----DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                +Y  RL++EL++I  M F+GYFLIV+DFI+W+KK  I VGPGRGSGAGSV A++L
Sbjct: 357 EELKTEYFARLNYELDIICNMNFAGYFLIVSDFIKWSKKEGILVGPGRGSGAGSVVAWSL 416

Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
            ITD+DP++F LLFERFLNP+R+SMPDFDIDFCQ+RR+EVI YV++KYG  RV QIITFG
Sbjct: 417 LITDLDPIKFGLLFERFLNPERISMPDFDIDFCQERREEVINYVRSKYGDNRVGQIITFG 476

Query: 451 SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLAD---- 505
            +QAKA ++DV R L +PY   D L +L+P    +PVSL QAI +      A   +    
Sbjct: 477 KMQAKAVIKDVARVLSLPYKFADYLTELVPFSAVNPVSLEQAIREVPELANAAKGNGLYN 536

Query: 506 -----PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
                  +  +L+ S  LEGL+RH+STHAAGIVI    L  +VP+Y+D  SD+ V  ++M
Sbjct: 537 LEGEAELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVPVYKDANSDMLVVGYSM 596

Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
           K+ E AGLIKFDFLGL+TLT++      L ++G++VD + + FDD++TY +L     +G+
Sbjct: 597 KYSEIAGLIKFDFLGLQTLTVITDCKKLLKEQGIEVDFNNMTFDDNKTYQMLCKGKGVGV 656

Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
           FQ ES GM+ AL  ++PD I D+IAL +LYRPGP++NI  Y   K+  ++   +H L+ P
Sbjct: 657 FQFESIGMKDALRRLKPDSIHDLIALGALYRPGPMENIPTYIACKHKLQQPDYLHELLKP 716

Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
           +L+ET GV+IYQEQV +IAQ+L+GY+L  AD+LRRAMGKKIK+EM++Q+E F+ GA  N 
Sbjct: 717 ILEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRAMGKKIKKEMEEQEEIFVKGAIANN 776

Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
           IS++ A +IF  +AKFA YGFNK+HAAAY VISYQTA++K +YP EFL A + LE++N +
Sbjct: 777 ISESQAKSIFATVAKFAGYGFNKAHAAAYGVISYQTAYLKANYPAEFLVACLNLELNNHD 836

Query: 801 KIKKFCQDARQFNIQIMPPSVN 822
           KI  F Q+A+   I+I+ P++N
Sbjct: 837 KINLFLQEAKDNGIKIIAPNIN 858



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 13/207 (6%)

Query: 832  DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            +N I ++L AIKGV     + +  E  A   F S+ DF  R+  K +N ++LE+L+ +G 
Sbjct: 926  ENAIIFALGAIKGVTPNFGKLVTDERKARGMFKSITDFIERLPPKSINSKLLENLIKSGC 985

Query: 891  LDCFGYSRMQLLQSLDNIQKYA-QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
             D    +R+QL  S+  +  Y+  + E+  +N+   I   +  T S  I +     + ++
Sbjct: 986  FDELHDNRLQLFSSISKLLSYSTSYHEEQGSNQFSLI---KVSTLSPTILVSSDYADKNT 1042

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQK 1007
            + F  E   +G + S HPL  Y+ I  ++ I    +    +    N + LA ++   Q+K
Sbjct: 1043 LAF-YEFEAMGLFISNHPLMQYQEIFSRLNILNTADLQNNLPEGTNRVNLAGVI---QKK 1098

Query: 1008 KTRKGSRIGWVT--FSEPAKEYEANFF 1032
             +R  +R  +VT   S+P   +E + F
Sbjct: 1099 DSRMSARGRFVTLVLSDPENIFELSIF 1125


>gi|225548617|ref|ZP_03769664.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 94a]
 gi|225370647|gb|EEH00083.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 94a]
          Length = 1161

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/971 (40%), Positives = 593/971 (61%), Gaps = 28/971 (2%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  AGI+PI
Sbjct: 21  FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG  ++  M    K   +          ++LL     GY+ L++L S  YL +      R
Sbjct: 81  IG--IEAYMAKTSKFLKKQDDLEKMSYHLILLAKNELGYKNLLKLTSISYL-EGFYYRPR 137

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+ LQRH 
Sbjct: 138 IDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQRHG 196

Query: 191 GYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
             D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S ++R ++ 
Sbjct: 197 IKDQDIVNERLVEYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDENRLKME 256

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECDDIQKE 306
           T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E + + + 
Sbjct: 257 TNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFNTLGEY 316

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               L +  + GL+ R               + R  +EL+VI  M F GYFLIV DFI++
Sbjct: 317 ----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVWDFIKF 365

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDIDFC + 
Sbjct: 366 AHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDIDFCFEG 425

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+ P   
Sbjct: 426 RDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPDGPK-- 483

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+  VP+Y
Sbjct: 484 VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTDYVPLY 543

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IPFD 604
           +D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +  R V  D  +  IP +
Sbjct: 544 KDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIKNIPDN 601

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  +   
Sbjct: 602 DVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQFIAA 661

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK ++E
Sbjct: 662 KKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKKEDE 721

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K +YP
Sbjct: 722 MNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLKANYP 781

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L  IK 
Sbjct: 782 EYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLNGIKN 841

Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
           +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R  L +
Sbjct: 842 LGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRKTLFE 901

Query: 904 SLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
           +LD + +     + N+     ++F     +         + F   + S     E+ +LGF
Sbjct: 902 NLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQAFKEYSYSELLGFEKELLGF 961

Query: 962 YFSGHPLDVYK 972
           Y SGHPLD YK
Sbjct: 962 YVSGHPLDPYK 972


>gi|289523190|ref|ZP_06440044.1| DNA polymerase III, alpha subunit [Anaerobaculum hydrogeniformans
            ATCC BAA-1850]
 gi|289503733|gb|EFD24897.1| DNA polymerase III, alpha subunit [Anaerobaculum hydrogeniformans
            ATCC BAA-1850]
          Length = 1144

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/1044 (38%), Positives = 627/1044 (60%), Gaps = 52/1044 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA+ + +++ +       A+A+TD   +F A+EF  +    G++PI
Sbjct: 10   FVHLHVHTEYSLLDGAIKIKDLVSRAKEWDMGAVAVTDHGVMFGAIEFYYECMKQGVKPI 69

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +D + + +   QG         ++LL    EGY+ L++LVS +  ++      R
Sbjct: 70   MGCEVYVDPKGHTRREGQGGNY-----HLLLLAENEEGYRNLVKLVS-IANVEGFYYKPR 123

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
            +    L +  ++GLI  +   +G +           A+++ L ++ +FG+   Y+ +  +
Sbjct: 124  VDYDLLSKY-SKGLIASSACLAGEVPSLILSGRYDEAKEKALLYRDIFGEGNFYLEIMSN 182

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++      V++LA    +PL+ATN++ +L   D + H++L+ V  ++ V+ K+R + 
Sbjct: 183  GLSEQAVANKHVIELARKANIPLLATNDAHYLESYDADWHEILLCVQTNSTVNSKNRFQF 242

Query: 249  -TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + + YL++  EM  IF D L +AL NTV+I+ RC+  L+    +LP +   E + +   
Sbjct: 243  GSKEFYLRSPVEMWKIFGDELSDALHNTVDISERCNVKLEFGQYMLPEYKVPEGETL--- 299

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+ L  KA  GL  R     I      Q+Y +R+++EL VI +M F+GYFLIV DFI  
Sbjct: 300  -ESYLALKAQEGLARRFGGREIP-----QEYIKRMEYELGVIKQMGFAGYFLIVQDFINA 353

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+  IPVGPGRGS AGS+ AYAL IT+IDP+ ++LLFERFLNP+R+SMPD D D    R
Sbjct: 354  AKERGIPVGPGRGSAAGSLVAYALRITEIDPITYNLLFERFLNPERISMPDIDTDISDKR 413

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH- 485
            RDEVI YV  KYG ++VAQIITF  ++++AA+RDVGRAL MPY  VD++ KLIP + +  
Sbjct: 414  RDEVIDYVVEKYGRDKVAQIITFDRMKSRAAVRDVGRALDMPYPDVDKVAKLIPFNVSSI 473

Query: 486  ------PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                     L+A+ D +R          V +LL+ +  +EG+ RH S HAAG+VI   PL
Sbjct: 474  EEALELSHELKALYDGNR---------EVKQLLDYASHIEGIARHCSQHAAGVVISPEPL 524

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DL 598
              +VP+ + +     VTQ+ M+ +EK GL+K DFLGL+TL++++++L  +A+ G KV DL
Sbjct: 525  VNIVPL-KAINGTQIVTQYPMEPLEKLGLVKMDFLGLRTLSMIEETLKNIAKNGKKVPDL 583

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  T+ +L    T+G+FQLESSGMRQ L+ + PD  +DIIA+++LYRPGP+ + 
Sbjct: 584  TQLPMDDRATFEMLQRGDTMGVFQLESSGMRQLLKKLCPDSFQDIIAVLALYRPGPLGSG 643

Query: 659  VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V  Y  RK+G+  I   HP ++  LKET G+I+YQEQVMQIA  L+GY+L +AD+LRRA
Sbjct: 644  MVDQYIERKHGRSPISYPHPALEEALKETYGIILYQEQVMQIAARLAGYTLGQADILRRA 703

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  EEM++Q++ F+ G  +N +S   A  IF+L+  FA YGFNKSH+AAYA+ISYQT
Sbjct: 704  MGKKKVEEMEEQRQVFVKGCLENAVSAEQANEIFDLIQYFAGYGFNKSHSAAYAMISYQT 763

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKI-KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            A++K HYPVEFLAA ++  +   ++I  ++ ++ R   I+++PP VN     F    + +
Sbjct: 764  AYLKAHYPVEFLAAFLSSHIGAKKEILARYVREVRSDGIEVLPPDVNESEAGFTAVGDVV 823

Query: 836  YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L A+   G+     I++A  +  P+ SL DF SR+D + +N+ V+ESL+  GA D  
Sbjct: 824  RFGLTAVAKAGSGAVEAILKARKEGGPYKSLWDFVSRIDLRAVNKSVIESLIGVGAFDGL 883

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF-- 952
              +R Q+L+SL  + +    +++++    + +F+ +    +D + +E   V+     F  
Sbjct: 884  HSNRRQILESLPVLLEARARLDEDKF--QQRLFSLDG---NDSLDVEPALVDIEDFEFHE 938

Query: 953  --ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK-QQKKT 1009
              E E+  +G Y SGHP + Y+  +RK       E +         L   +V+   +K T
Sbjct: 939  KLELEKDAVGLYISGHPFEAYEERVRKYAYCTPSELIHWCSPQAKPLVGGIVTDVAEKYT 998

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            +KG  +G V   +   + E   FP
Sbjct: 999  KKGDLMGIVGVEDLDAKLEVVCFP 1022


>gi|294787965|ref|ZP_06753209.1| DNA polymerase III, alpha subunit [Simonsiella muelleri ATCC 29453]
 gi|294484258|gb|EFG31941.1| DNA polymerase III, alpha subunit [Simonsiella muelleri ATCC 29453]
          Length = 1151

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1028 (38%), Positives = 590/1028 (57%), Gaps = 61/1028 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            ++ L++HS +S+++G + L  +    A    PA+ +TD  N F  L+F +    AGI+PI
Sbjct: 6    YIPLRIHSEFSIIDGTIRLKELAQTAAKFGLPALGLTDLMNTFGLLKFYKICRNAGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G   D+ + +  K  N    P+      +LL+   +GY RL EL+++ +      Q   
Sbjct: 66   MGA--DVRIHNPHKPDN----PY----RALLLIRNEKGYTRLSELLTQAHTHQHNHQPPE 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   WL E    GLI L+G   G +           A+     +   F +  Y+ LQR  
Sbjct: 116  LLEDWLAEGDNSGLICLSGAHMGEVGSQLMLGHDDAAQIAAQKYATWFPNAFYLELQRLP 175

Query: 191  GYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
                +    S  +++A   +LP+VAT+ + FL   D+ AHD  + +A+   ++   RPR 
Sbjct: 176  EKPEWETYVSGSLKIAAKLDLPVVATHAAQFLQPNDFLAHDTRVCIANGWTLTDPKRPRE 235

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 Y     EM+S F+D+PEAL+N+VEIA+RC+  L +    LP+F   +  ++    
Sbjct: 236  FVASQYFIQPDEMLSRFADIPEALQNSVEIAKRCNLTLTLGKNFLPQFPTPDGMNL---- 291

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFI 364
            ++ + + +  GL+ RL      +   AQ   +Y+ RLDFELN I +M F GYFLIV DFI
Sbjct: 292  DDYIIHLSNLGLQERLDTLYPNETERAQRLPEYQARLDFELNTIIQMGFPGYFLIVQDFI 351

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAK+N  PVGPGRGSGAGS+ AY+L ITD+DPL++SLLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 352  NWAKQNGCPVGPGRGSGAGSLVAYSLKITDLDPLKYSLLFERFLNPERVSMPDFDIDFCQ 411

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
              R  VI YV+ KYG + V+QI+TFG+L +K+ +RDVGR LQ+P+   D+L KL+P    
Sbjct: 412  ANRGRVIEYVREKYGKDAVSQIVTFGTLSSKSVIRDVGRVLQLPFGLCDKLSKLVPIVQN 471

Query: 485  HPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             P+ L+ AIA +    +  + +   + L++++ KLE L R+   HA G++I    +S   
Sbjct: 472  KPLHLEKAIATEPEMMQI-VKEEEAEELMDLAMKLEDLTRNLGMHAGGVLIAPGKISDFC 530

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----VDLS 599
             +Y+      PV+ ++   +E+ GL+KFDFLGL+ LT+++ + +F+ Q   K     D++
Sbjct: 531  GVYQADEHASPVSMYDKGDVEEIGLVKFDFLGLRNLTIIEMAQNFIKQTTGKDIDVNDVN 590

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            + P DD   Y +     T  +FQ ESSGM++ L   +   +E+IIA VSLYRPGP+D I 
Sbjct: 591  IAPLDDQAAYQIFRDANTTAVFQFESSGMKKMLSQARTTNLEEIIAFVSLYRPGPMDLIP 650

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G  K   +HPL+ P+L+ T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 651  DFIARMKGA-KFEYMHPLLAPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAMGK 709

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K ++ F  GA+K GI++  A  IF+ + KFA YGFNKSHAAAYA +S+QTAW+
Sbjct: 710  KKVEEMVKHRDIFAQGAAKQGINREKADEIFDYMEKFAGYGFNKSHAAAYAYVSFQTAWL 769

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFN-IQIMPPSVNTPCVDFKVGDNR-IY 836
            K HYP EF+AA+M+ E+DN +++K F  DAR + N I  +PP VN     F   + + I 
Sbjct: 770  KAHYPAEFMAATMSSELDNTDQLKIFYDDARSKLNGITFLPPDVNESYYRFVPNNQKQIR 829

Query: 837  YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y+L AIKG G      I+ A  +   F +L DFC RV  + +NRR +E+L+  GA D   
Sbjct: 830  YALGAIKGTGEAAVNAIVAARESGGKFKNLFDFCERVGKQHINRRTIEALIRGGAFDGLE 889

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFSVENSS 949
             +R  LL    N++   Q  ++   N      A++ G F       +++ +      + S
Sbjct: 890  TNRALLLA---NVELALQNADQKANN------ANQGGLFDMLDDAIEELEMLPEKAWSES 940

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMG---------------IKGYEESVATIRGNN 994
             +   E++ +GFY SGHP + ++  +R+                 I G+   + TI G N
Sbjct: 941  QKLAEEKQAIGFYLSGHPFEPHRAEVRQFSKTPLAQLRPAQHTQLIAGFATQIRTIMGKN 1000

Query: 995  IRLAAMVV 1002
             +  A+ +
Sbjct: 1001 GKFIAITL 1008


>gi|111115407|ref|YP_710025.1| DNA polymerase III subunit alpha [Borrelia afzelii PKo]
 gi|110890681|gb|ABH01849.1| DNA polymerase III, subunit alpha [Borrelia afzelii PKo]
          Length = 1161

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/1019 (39%), Positives = 614/1019 (60%), Gaps = 33/1019 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  AGI+PI
Sbjct: 21   FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80

Query: 71   IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IG +  +        K  + GK  +     ++LL     GY+ L++L S  YL +     
Sbjct: 81   IGIEAYMAKTSKFLKKHDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+ LQR
Sbjct: 136  PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+     ++V+ +    +PL   N+S +++ ED  A D+++ +      S ++R +
Sbjct: 195  HGIKDQDIVNERLVEYSKELGVPLTVANDSHYVNREDASAQDIIVCIGTGAKKSDENRLK 254

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECDDIQ 304
            + T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E + + 
Sbjct: 255  METNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIEFNTLG 314

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +     L    + GL+ R               + R  +EL+VI RM F GYFLIV DFI
Sbjct: 315  EY----LEYLTLEGLKFRYKT-------LTSKIKDRAFYELSVIIRMGFEGYFLIVWDFI 363

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A  ++IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDIDFC 
Sbjct: 364  KFAHDHDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDIDFCF 423

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + RDE+I+YV NKYG ++VAQIITFG+L+AKA ++DV R L +P+++ + L K IP+ P 
Sbjct: 424  EGRDEIIKYVTNKYGEDKVAQIITFGTLKAKAVVKDVARVLDIPFAESNELTKFIPDGPK 483

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+  VP
Sbjct: 484  --VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTDYVP 541

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IP 602
            +Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +  R V  D  +  IP
Sbjct: 542  LYKDYKQGSISTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIKNIP 599

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D +T+ +L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  + 
Sbjct: 600  DNDVKTFKMLGEGRSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQFI 659

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK +
Sbjct: 660  AAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKKE 719

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            +EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K +
Sbjct: 720  DEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLKAN 779

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L  I
Sbjct: 780  YPEYFMAANLTNEINNNDKLSYYIEESKAMGINVLKPDINRSFREFRVTDSGISYGLNGI 839

Query: 843  KGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R  L
Sbjct: 840  KNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLNQNRKTL 899

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
             ++LD + +     + N+     ++F     + +       +     + S     E+ +L
Sbjct: 900  FENLDRLIEVVSEDKNNKRLGQNSLFDVLESQESIQQSFNYQVLKEYSYSELLGFEKELL 959

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT-RKGSRIGW 1017
            GFY SGHPLD YK  +         + +A  + + ++ + ++ S +  +T R  SR+ +
Sbjct: 960  GFYVSGHPLDPYKKAINNFSSLNVLKDLAAKKDSIVQFSGILNSVKIIQTKRNNSRMAF 1018


>gi|154687056|ref|YP_001422217.1| DNA polymerase III DnaE [Bacillus amyloliquefaciens FZB42]
 gi|154352907|gb|ABS74986.1| DnaE [Bacillus amyloliquefaciens FZB42]
          Length = 1115

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/1031 (38%), Positives = 614/1031 (59%), Gaps = 48/1031 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQVHS YSLL  A S+  ++ +       ++A+TD N ++ A+EF +   + GI+P
Sbjct: 5    SFVHLQVHSGYSLLNSAASVKELVTQAKELGYSSLALTDENVMYGAIEFYKACKSNGIKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    I   D         T     P ++LL  T  GYQ L+++ S +  + +G    
Sbjct: 65   IIGLTASIYTDD---------TELEAHP-LILLAETNTGYQNLVKISSALQSMAKGGMKR 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            +    W++    EGLI +T G +G I+        + A +    F++LFGD R Y+  Q 
Sbjct: 115  K----WMKSY-HEGLIAITPGENGYIESLLQTGKFEEAVRAAEGFRELFGDGRFYLGYQP 169

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +G++   E ++++L+   E+ + A  +  ++ +ED +A+  L A+        +D+   
Sbjct: 170  FKGHETLSE-EILRLSAETEIAVCAAGDVRYIKKEDQDAYRCLCAIKAGE--KWEDQSGN 226

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF---ILQVHAPILPRFIEKECDDIQK 305
             PD YL+   EM  +++  PEA+E    IAR+C     + Q   P  P    K  DD   
Sbjct: 227  LPDLYLRAPEEMAELYTRHPEAIEAAARIARQCRVDVSLGQTQLPSFPAPDGKSADDYLA 286

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            E  +E       GL +R        G   +   +RL++EL+VI RMKFS YFLIV DF++
Sbjct: 287  EICHE-------GLRLRF-------GTPDERAVRRLEYELDVIRRMKFSDYFLIVWDFMK 332

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A +  I  GPGRGS AGS+ AY+L ITD+DPL+ SLLFERFLNP+R+SMPD DIDF   
Sbjct: 333  YAHEKGIVTGPGRGSAAGSLVAYSLFITDVDPLKHSLLFERFLNPERISMPDIDIDFPDT 392

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI+YVQNKYG   VAQIITFG+L AKAALRD GR   +   + D+L +LIP+ P  
Sbjct: 393  RRDEVIQYVQNKYGAMHVAQIITFGTLAAKAALRDTGRVFGISPKEADQLARLIPSKPG- 451

Query: 486  PVSLQAIADDSRFREARLADPSV-DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             ++L+     S     RL++ +V  ++ +I++K+EGL RH STHAAG+V+   PLS++VP
Sbjct: 452  -MTLEEARRQSAQLNRRLSESAVLHKVFQIARKIEGLPRHTSTHAAGVVLSKEPLSEVVP 510

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603
            + ++    + +TQ+ M  +E  GL+K DFLGL+ LTL++     + +    K+D S I +
Sbjct: 511  L-QEGHDGVYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESIKTMIEKETNTKIDFSEISY 569

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D +T+ LL+   T GIFQLESSGMR  L+ ++P  +EDI+A+ +LYRPGP++NI ++ +
Sbjct: 570  QDEKTFSLLSNGDTTGIFQLESSGMRNVLKRLKPSRLEDIVAVNALYRPGPMENIPLFID 629

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+ ++   H  +  +L +T GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ KK K+
Sbjct: 630  RKHGRARVEVPHEDVRNILSDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKQKD 689

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +D+++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I YQ A++K HY
Sbjct: 690  ILDRERSHFVEGCLKKEYSVVTANEVYDLIVKFANYGFNRSHAVAYSMIGYQLAYLKAHY 749

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P+ F+   +T  + N +KI ++  +A+   IQ++PPS+N     F   +  + YSL A+K
Sbjct: 750  PLYFMCGLLTSVIGNEDKISQYLHEAKGSGIQVLPPSINKSGFPFAPENGAVRYSLRAVK 809

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
             VG +  + I +A   KPF+ L DFC RV +K +NR+ +E+L+F+GA+D F  +R  LL 
Sbjct: 810  NVGVSAVKDIYKARTHKPFEDLFDFCFRVPAKSVNRKTIEALIFSGAMDEFNQNRAALLA 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-ITLEKFSVENSSVRFENEQRVLGFY 962
            S+D   ++A+    +  +    +F  E  +   K +  E+F + +  +RFE E   LG Y
Sbjct: 870  SVDVALEHAELFRAD--DDQMGLFLEESFSIKPKYVEAEEFPLVD-KLRFEKE--ALGVY 924

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            FS HPL  ++ +L+K G +    +    +G  + + A++   +  +T+ G  + ++T S+
Sbjct: 925  FSSHPLSAFRDLLKKRGAQAITAARQMPKG-QLSIGALLAGIKTIRTKTGQHMAFLTLSD 983

Query: 1023 PAKEYEANFFP 1033
               E EA  FP
Sbjct: 984  ETGEMEAVVFP 994


>gi|148239403|ref|YP_001224790.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 7803]
 gi|147847942|emb|CAK23493.1| DNA polymerase III alpha subunit [Synechococcus sp. WH 7803]
          Length = 1173

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/1060 (38%), Positives = 607/1060 (57%), Gaps = 53/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++  A   PA+A+TD   ++ A+E  +    AGI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPQMVERAKALGMPALALTDHGVMYGAVELLKLCKGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVP---SIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IIG ++ +       +      P P       +V+L   A GY+ L++L S  +L     
Sbjct: 62   IIGNEMYV-------INGSIDDPQPKKERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRG 114

Query: 127  QSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            + +  R C+   L +  +EGLI+ T    G I +A       VA      ++++FGD  Y
Sbjct: 115  RGIFSRACIDKHLLQQHSEGLIVATACLGGEIPQAIMRERPDVARDVARWYQEVFGDDFY 174

Query: 184  VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H    DR    ++V++A    + LVATN++ +L+  D EAHD L+ V    ++S 
Sbjct: 175  LEIQDHGSPEDRIVNVEIVKIAQELGIQLVATNDAHYLTSNDVEAHDALLCVLTGKLISD 234

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296
            + R R T   YLK+  EM  +F+D      + +A+ NTV +A +      +    +PRF 
Sbjct: 235  EKRLRYTGTEYLKSEEEMGRLFADHLDPAVVQQAIANTVSVAEKVEDYDILGRYQMPRFP 294

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E           LR     GL  RL  G  A G     Y  RL  EL ++ +M F  Y
Sbjct: 295  IPE----GHTPVTYLREVTEQGLRDRL--GLSADGTIEATYADRLSHELQIMEQMGFPTY 348

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL+V D+I++A++  IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMP
Sbjct: 349  FLVVWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMP 408

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D DFC +RR EVI YV  +YG E+VAQIITF  + +KA L+DV R L +PY   DRL 
Sbjct: 409  DIDTDFCIERRGEVIDYVTRRYGEEKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLA 468

Query: 477  KLIPNDPAHPVSLQA-IADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            KLIP     P  L+A I D+S    F+E    DP V R ++++ ++EG  +    HAAG+
Sbjct: 469  KLIPVVRGKPAKLKAMIGDESPNPDFKEKYDKDPVVQRWVDMAMRIEGTNKTFGVHAAGV 528

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI   PL +LVP+ R+    + +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +AQ 
Sbjct: 529  VIAADPLDELVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVAQS 587

Query: 593  -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             G ++D   +P  D  T+ LL      GIFQLES+GMRQ +  ++P  +EDI ++++LYR
Sbjct: 588  SGERIDPDQLPPQDQGTFDLLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYR 647

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+D  ++  + NRK+G+E I   H  ++P+L ET G+++YQEQ+M+IAQ L+GYSL E
Sbjct: 648  PGPLDAGLIPKFINRKHGREAIDFAHSTLEPILSETYGIMVYQEQIMRIAQDLAGYSLGE 707

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK   EM K +  F+ GAS+ G+ + +A  +F+ +  FA+Y FNKSH+ AY
Sbjct: 708  ADLLRRAMGKKKVSEMQKHRGIFVKGASERGVDEKVADELFDQMVLFAEYCFNKSHSTAY 767

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
              ++YQTA++K HYPV ++AA +T+     +K++++  +     I++MPP VN    DF 
Sbjct: 768  GAVTYQTAYLKAHYPVAYMAALLTVNAGASDKVQRYISNCNAMGIEVMPPDVNASGTDFT 827

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              D RI + L+A++ +G    R ++ +  AD PF+SL D C RV S  +NRR LESL+  
Sbjct: 828  PRDQRILFGLSAVRNLGDGAIRALIRSREADGPFESLADLCDRVPSSVINRRSLESLIHC 887

Query: 889  GALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITL 940
            GA+D      +R QL+  LD +  +A    ++R +   N+F      A  +      ++L
Sbjct: 888  GAMDALEPEANRAQLIADLDLLLDWATSRARDRASGQGNLFDLMAGAAGGEADAPTDLSL 947

Query: 941  EKFSVE----NSSVRFENEQRVLGFYFSGHPLDVYKP---ILRKMGIKGYEESVATIRGN 993
               +      + S + + E+ ++GFY S HPL    P   +L  +G+ G EE     + +
Sbjct: 948  APKAAPVKDYHPSEKLKLEKDLVGFYLSDHPLKQLTPPARLLAPIGLGGLEEQADKAKVS 1007

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             I   AMV   +Q  TRKG R+  +   +     EA  FP
Sbjct: 1008 AI---AMVSEMRQVTTRKGDRMAVLQLEDLTGSCEAVVFP 1044


>gi|302389432|ref|YP_003825253.1| DNA polymerase III catalytic subunit, DnaE type [Thermosediminibacter
            oceani DSM 16646]
 gi|302200060|gb|ADL07630.1| DNA polymerase III catalytic subunit, DnaE type [Thermosediminibacter
            oceani DSM 16646]
          Length = 1145

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/1029 (38%), Positives = 617/1029 (59%), Gaps = 41/1029 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH++YSLL+GA  ++ +  +       A+AITD   ++  ++F +   A G++PI
Sbjct: 4    FVHLHVHTNYSLLDGACEISKLAKRAKELGMNAMAITDHGVMYGIIDFYKTMKAEGVKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +    M ++          +VLL     GY+ L++LVS +  L+      R
Sbjct: 64   IGCEVYVAKR---SMADRQPGIDDDQYHLVLLAENETGYKNLVKLVS-LGFLEGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
            +    L++  ++GLI L+   +G I         + A++      ++FG    ++ LQ H
Sbjct: 120  VDKEVLKK-HSQGLIALSACLAGEIPYFLENGEYEKAKEAACELNEIFGKGNFFLELQDH 178

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ R  + + +L+    +PLVATN+  ++ + D   HD ++ +     V  +DR + 
Sbjct: 179  GIPEQKRVNANLCRLSKETGIPLVATNDVHYILKSDEPVHDAMLCIQTGKTVKDEDRLKF 238

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK-- 305
             + + YLK++ EM  +FS +PEALENTV IA+RC+  L      LP F      ++ +  
Sbjct: 239  NSAELYLKSQEEMWRLFSHIPEALENTVMIAQRCNVELDFGRIHLPHF------EVPQGF 292

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             +++ L      GL  R        G    + + RLD+EL+VI RM +S YFLIV DF+ 
Sbjct: 293  TQDSYLEKLCYEGLVERY-------GRITPEIKARLDYELDVIKRMGYSSYFLIVWDFVN 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+KN I VGPGRGS AGS+ AY L IT++DPLR++LLFERFLNP+R++MPD D+DFC +
Sbjct: 346  FARKNGIMVGPGRGSAAGSLVAYCLHITNVDPLRYNLLFERFLNPERVTMPDIDVDFCYE 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV  KYG +RVAQI TFG++ A+AA+RDVGR L  PY +VD + K++P +P  
Sbjct: 406  RRQEVIDYVVRKYGEDRVAQIGTFGTMAARAAIRDVGRVLGYPYGEVDTVAKMVPMEPGM 465

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+  +   ++    +  + RL++ ++ LEG  RHASTHAAG+VI   PL +LVP+
Sbjct: 466  TIE-KALVLNPELKKLYDENERIKRLIDTAKGLEGFPRHASTHAAGVVISSEPLVELVPL 524

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
            ++   S++  TQF M  +E+ GL+K DFLGL+TLT+++ +L  + Q RG+ V L  +P D
Sbjct: 525  HKVGDSNVS-TQFTMTALEELGLLKMDFLGLRTLTVIRDALGLIEQTRGISVVLDELPLD 583

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
            D + Y LL+   T G+FQLESSGMR  L  ++P+  EDIIA++ LYRPGP+ +     + 
Sbjct: 584  DEKVYDLLSRGETTGVFQLESSGMRNLLRELRPERFEDIIAVIGLYRPGPLGSGAADEFI 643

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              KN +  I  +HP + P+L+ET G+I+YQEQVM+IAQ L+G++L++AD+LR+AMGKK +
Sbjct: 644  KNKNNQGSIKYLHPRLKPILEETYGIILYQEQVMKIAQDLAGFTLAQADILRKAMGKKQQ 703

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              M+ Q+  FI G  +NGI +  A NIFE ++ FA YGFNKSHAAAYA+I+YQTA++K H
Sbjct: 704  SVMEAQRAAFIRGCVENGIDEETAANIFEEISYFAGYGFNKSHAAAYAMIAYQTAYLKAH 763

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            +PVEF+AA +T    N +K+ ++  + R   I+++PP +N     F     +I + L A+
Sbjct: 764  FPVEFMAALLTSVRHNTDKVAQYIAECRHMGIEVLPPDINESFEVFTAVSGKIRFGLTAV 823

Query: 843  KGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K VG   A+ I++   +K  F S  DFC ++D  ++N++ +ESL+ +GA D  G  R QL
Sbjct: 824  KNVGEGMAKAIIKCRDEKGRFVSFSDFCEKLDQTEINKKAVESLIKSGAFDSLGARRSQL 883

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV----ENSSVRFENEQR 957
            L+  +++    Q  +K +     ++F  E     D +  E   +    EN  +  E E  
Sbjct: 884  LKVYEDVLNRVQKKQKQQGKNQLSLF--EMIRVDDVVEDELPDIPEYPENELLAMEKE-- 939

Query: 958  VLGFYFSGHPLDVYKPILRK---MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            VLG Y SGHPL  +K +L K   +  K   +     + N+  +   ++S+ + K+ K ++
Sbjct: 940  VLGLYLSGHPLREFKDLLEKTTTLCSKDLADEEKEFKDNSAVVVGGIISEIKLKSTKDNK 999

Query: 1015 I-GWVTFSE 1022
            +  ++T  +
Sbjct: 1000 LMAFITLED 1008


>gi|161869391|ref|YP_001598558.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 053442]
 gi|161594944|gb|ABX72604.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 053442]
          Length = 1109

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/1002 (39%), Positives = 578/1002 (57%), Gaps = 42/1002 (4%)

Query: 42   PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
            PA+ I+D  N F  ++F +   +AGI+PI    + I         N    PF      +L
Sbjct: 2    PALGISDLMNEFGLVKFYKACRSAGIKPIGAADVWIGN------PNAPDKPF----RAML 51

Query: 102  LVSTAEGYQRLIELVSRMYL-LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            ++    GY RL EL++  Y+  D+      +   WL+     GLI L+G   G +     
Sbjct: 52   IIRNDAGYLRLSELLTEAYVGKDRNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLL 111

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSL 218
              +   A    L +   F D  Y+ LQR      +    S  V+LA    LP+VAT+ + 
Sbjct: 112  NGNEDAARAAALKYAAWFPDAFYMELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQ 171

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            F+S +D+ AH+  + +A   V++ K RPR  TPD +      M+  F+DLPEALENTVEI
Sbjct: 172  FMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPDQFFIPPETMLERFADLPEALENTVEI 231

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            A+RC+  + +    LP F     D + +++   +L NK +    V+L      +     +
Sbjct: 232  AKRCNLHITLGKNFLPLF--PTPDGLSRDDYLIKLSNKGLQERMVQLYPDEAERAAKMPE 289

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
            Y++RLDFELN+I +MKF GYFLIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+D
Sbjct: 290  YQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLD 349

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            PL+++LLFERFLNP+R+SMPDFD+DFCQ  R  VI YV+ KYG + V+QI+TFG++ +KA
Sbjct: 350  PLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYVREKYGAKAVSQIVTFGTMSSKA 409

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEIS 515
             +RDVGR L++P+   D+L KLIP +   P+ L  A+  + + +E   A+   D L+ ++
Sbjct: 410  VIRDVGRVLELPFMLCDKLSKLIPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLA 468

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            +KLE L R    HA G++I    +S   P+Y+   S  PV+ ++   +E  GL+KFDFLG
Sbjct: 469  KKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLG 528

Query: 576  LKTLTLLQKSLDFLAQRGVK------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
            L+ LT+++     +AQ  +K      +D+  IP DD   Y +     T  +FQ ES+GM+
Sbjct: 529  LRNLTIIE-----MAQNNIKNTTGDIIDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMK 583

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
            + L+       E++IA VSLYRPGP+DNI  +  R  G+E    IHPL++ +L  T G++
Sbjct: 584  KMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIM 642

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQ AQ++ GYSL  AD+LRRAMGKK  EEM K +E F  GA+K GIS+  +  I
Sbjct: 643  VYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEI 702

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            F  + KFA YGFNKSHAAAYA+ISYQTAW+K HYP EF+AA+M+ E+DN +++K F  D 
Sbjct: 703  FNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDC 762

Query: 810  RQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLED 867
            R   I+ +PP +N     F    D +I Y+L AIKG G      I  A  +   F  L D
Sbjct: 763  RANGIEFLPPDINESDYRFTPYPDMKIRYALGAIKGTGEAAVESITSARQSGGKFTGLLD 822

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            FC RV  + +NRR LE+L+  GA D    +R  LL ++D     A   +K        +F
Sbjct: 823  FCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLANIDLAMNNAD--QKAANTNQGGLF 880

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +    + + L    + + S +   E+ V+GFY SGHP   Y   +R++      + +
Sbjct: 881  DMMEDAI-EPVRLVDAPMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKL 935

Query: 988  ATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            + ++  +++RLA  V + +    ++G +I +V+  + + + E
Sbjct: 936  SKLKPQDSVRLAGFVTAVRTMMGKRG-KIAFVSLEDLSGQVE 976


>gi|296327603|ref|ZP_06870148.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
            nucleatum subsp. nucleatum ATCC 23726]
 gi|296155277|gb|EFG96049.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
            nucleatum subsp. nucleatum ATCC 23726]
          Length = 1133

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1026 (38%), Positives = 609/1026 (59%), Gaps = 67/1026 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSL EG  S+++ L K       ++A+TD  N+F A+EF QKA   GI+P
Sbjct: 4    NFVHLNLHTEYSLSEGVNSIDSFLVKAKELGMTSLAVTDYANMFCAIEFYQKAKKMGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L I  +D              + S+ LL     GY+ L++L S +Y  ++ ++ +
Sbjct: 64   IIGLELPITNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRE-L 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFG-DRLYVNLQ 187
            ++    L+E  ++ LI L+   +G I +A   NSS     +++  + ++F  +  Y+ +Q
Sbjct: 112  KLNKEILKE-HSQDLIALSSSMNGEIGKAILTNSSDEKVNKIIDEYIEIFSKENFYLEIQ 170

Query: 188  RHRGYDRYRESQVVQ-----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                 +   E++++      LA  H+L LVATNN  ++  + YE HD+++ +     V +
Sbjct: 171  A----NELSETKIINDKFYDLAKFHDLELVATNNVYYVDRDGYELHDIIICIQSGLKVKE 226

Query: 243  KDRPR-VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            K+R R ++ + YLK++ EM     +   +A+EN   IA  C+  +       P +     
Sbjct: 227  KNRKRAISKELYLKSKDEMKRFLGEKFEKAIENANYIASLCNIEITFGNLQFPYY----- 281

Query: 301  DDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYH---AQDYRQRLDFELNVIARMKFS 354
             ++  E          +G++  L       I K Y     +D   RL++EL+VI +M +S
Sbjct: 282  -EVPSE---------YSGMDEYLKTICHTNIKKLYKEDLTKDILDRLEYELSVIIKMGYS 331

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYF++V DFI +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+S
Sbjct: 332  GYFIVVWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERIS 391

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD DID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+
Sbjct: 392  MPDIDIDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDK 451

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            L KLI   P   +  + + ++    +    D  + ++++++ ++E   RH STHAAGI+I
Sbjct: 452  LAKLIS--PFQTLE-KTLKENVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILI 508

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
                L + VP+Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + 
Sbjct: 509  TKEDLDRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKN 568

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            + VDL  IP DD + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPG
Sbjct: 569  IDVDLYKIPLDDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPG 628

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+ + +V  + NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD
Sbjct: 629  PLQSGMVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEAD 688

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK    M + +E+FI  A  NG ++  +  IFEL+ KFA YGFNKSH+ AYA+
Sbjct: 689  LLRRAMGKKNFAIMRENREKFIERAVHNGYTEEKSEEIFELIDKFAGYGFNKSHSVAYAM 748

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISY TA+ K HYP  + AA MT E+     I  +  DA++  +++  P++N+P   F+V 
Sbjct: 749  ISYWTAYFKVHYPAYYYAAVMTSEISETGDIAYYFNDAKEHEVRVYSPNINSPSAYFEVK 808

Query: 832  DNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            ++ I YSLAAIK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GA
Sbjct: 809  NDGITYSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGA 868

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFSVEN 947
            LD    +R +   S+D +  Y+    K    +  N+F     T  DK  L   E F+++ 
Sbjct: 869  LDEIKGNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKTI-DKFNLAISEDFTLDE 927

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE------SVATIRGNNIRLAAMV 1001
               +   E+  LGFY S HPLD YK IL    IK   E       V    G  I L  ++
Sbjct: 928  ---KLNKEKEFLGFYLSSHPLDKYKDILTTFSIKKLSEFDLEGNQVIKTFGTIINLKKII 984

Query: 1002 VSKQQK 1007
              K+++
Sbjct: 985  TKKEEQ 990


>gi|224534774|ref|ZP_03675346.1| DNA polymerase III subunit alpha [Borrelia spielmanii A14S]
 gi|224514022|gb|EEF84344.1| DNA polymerase III subunit alpha [Borrelia spielmanii A14S]
          Length = 1161

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/1014 (39%), Positives = 612/1014 (60%), Gaps = 32/1014 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  AGI+PI
Sbjct: 21   FIHLHVHSDYSLLDGAAKISDIVSKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80

Query: 71   IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IG +  +        K  + GK  +     ++LL     GY+ L++L S  YL +     
Sbjct: 81   IGIEAYMAKTSKFLKKHDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+ LQR
Sbjct: 136  PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S ++R +
Sbjct: 195  HGIKDQDIVNERLVEYSRELGVPLTAANDSHYVNREDAVAQDIIVCIGTGAKKSDENRLK 254

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECDDIQ 304
            + T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E D + 
Sbjct: 255  METNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDEFKITFPGPILPDYQIPIEFDTLG 314

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +     L    + GL+ R               + R  +EL VI RM F GYFLIV DFI
Sbjct: 315  EY----LEYLTLEGLKFRYKT-------LTSKIKDRAFYELGVIIRMGFEGYFLIVWDFI 363

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A  ++IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDIDFC 
Sbjct: 364  KFAHDHDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDIDFCF 423

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + RDE+I+YV N+YG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP  P 
Sbjct: 424  EGRDEIIKYVTNRYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPEGPK 483

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              VSL+ + +D+  +E   + P    L++ +  LEG+ RHASTHAAGIVI   PL+  VP
Sbjct: 484  --VSLKEVLNDNSLKEYFTSKPIYKELMDAALVLEGMNRHASTHAAGIVISKTPLTDYVP 541

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IP 602
            +Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +  R V  D  +  IP
Sbjct: 542  LYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFRIKNIP 599

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D +T+ +L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  + 
Sbjct: 600  DNDVKTFKMLGEGKSASVFQFESEGMQQILKDTKPDNIEDLIALNALYRPGPMQFIPQFI 659

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK +
Sbjct: 660  AAKKGVKRIKYPHPDLKEVLRSTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKKE 719

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            +EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K +
Sbjct: 720  DEMNEMKVDFLRGAVEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLKAN 779

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L  I
Sbjct: 780  YPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLNGI 839

Query: 843  KGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R  L
Sbjct: 840  KNLGGIVVDLIIDEREKNGKYSSFEDFVRRVDDKVINKKFLESAIKSGLFDSLDKNRKTL 899

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
             ++LD + +     + N+     ++F     + +       + F   + S     E+ +L
Sbjct: 900  FENLDRLIEVVSEDKNNKKLGQNSLFDVLGSQESIQQSFNYQVFEEYSYSELLGFEKELL 959

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            GFY SGHPLD YK  +         + +A  + + ++ + ++ S +  +T++ +
Sbjct: 960  GFYVSGHPLDPYKKAINNFSSLNVLKDLAAKKDSTVQFSGILNSVKIIQTKRNN 1013


>gi|152990427|ref|YP_001356149.1| DNA polymerase III subunit alpha [Nitratiruptor sp. SB155-2]
 gi|151422288|dbj|BAF69792.1| DNA polymerase III, alpha subunit [Nitratiruptor sp. SB155-2]
          Length = 1174

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/1048 (37%), Positives = 608/1048 (58%), Gaps = 49/1048 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+F HL +H+ YSLL+GA  +  +  K       A+A+TD  N+F A++F +   A G++
Sbjct: 3    PNFTHLHLHTEYSLLDGANKIKALAKKAKELGMSAVAMTDHGNMFGAIDFYKTMKAEGLK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG +  +   D+L     G         + L      GY+ L+  +S M  +      
Sbjct: 63   PIIGMEAYLHNSDDL-----GDKSTRQRFHLCLFAKNEIGYKNLM-FLSSMSYIKGFYYY 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV---------AEKRLLTFKKLFG 179
             RI    L E  +EGLI  +    G ++     N             A+K  L +K++FG
Sbjct: 117  PRINKKLLAE-HSEGLICTSACLQGEVNWHLNTNERNTKFGAKGYEEAKKVALWYKEVFG 175

Query: 180  DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            D  Y+ L RH  +D+   + Q+++L+    + +VATN++ +L ++D E H+  M +A + 
Sbjct: 176  DDFYLELMRHGIHDQLAIDEQIIKLSLETGIKIVATNDTHYLEKKDAEPHEAFMCIAMNK 235

Query: 239  VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-- 295
            +    +R R +  + YLK+  E+  +++D+PEALENT EI  +C+  L +  P  P F  
Sbjct: 236  LYDDPNRLRHSVHEFYLKSPEEIAKLYADIPEALENTQEIVDKCNLELNLGNPTPPNFKF 295

Query: 296  ---IEKECD-DIQKEEENELRNKAV-------AGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                 KE   ++   E     N  V        GL+ RL    + K  H Q Y  RL  E
Sbjct: 296  TVEYAKEYGLEVPTSERYSFENDEVLFEYICKEGLQKRLEY--VPKEQH-QKYWDRLQHE 352

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +++I +MKF GY +IV DF++ AKK  IPVGPGRGS AGS+ AYA+ ITDIDPL+++LLF
Sbjct: 353  IDIIKKMKFPGYMIIVWDFVREAKKRGIPVGPGRGSAAGSLVAYAMGITDIDPLKYNLLF 412

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD DIDFCQ+RR E+I YV  KYG   VAQ+ITFG+L AK  +RDV R 
Sbjct: 413  ERFLNPERVSMPDIDIDFCQERRGEIIDYVVQKYGRYNVAQVITFGTLLAKGVIRDVARV 472

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L + Y+  DR+ KLIP+     +  +A   +S+ +E   +DP  +R+   +  LEGL R+
Sbjct: 473  LGLSYNDGDRMAKLIPDKLGITLK-EAYEQESKIKELIESDPKFERVWRFALALEGLKRN 531

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            A  HAAG+VI +  L    P+Y+    +  VTQ+++ ++E   LIKFDFLGLKTLT++  
Sbjct: 532  AGMHAAGVVISNEELWHKTPLYKPSGEETIVTQYSLNFLEDVDLIKFDFLGLKTLTVIDN 591

Query: 585  SLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++  + +R   K+D + I  +D + Y L+ +  TLG+FQ+ES GM++    ++P   EDI
Sbjct: 592  AVKLVEKRYNTKIDWNRIDLNDKKVYDLIQSGHTLGLFQIESDGMQRLNARLKPTTFEDI 651

Query: 644  IALVSLYRPGPIDNIVV--YNNRKNGKEKI------VSIHPLIDPMLKETQGVIIYQEQV 695
            IA+++LYRPGP+++ ++  +  RK+G++++      VS   L +  L+ T G+I+YQEQV
Sbjct: 652  IAVLALYRPGPMESGMLDDFIERKHGRKQVYYPFEEVSFDELKET-LEPTYGMIVYQEQV 710

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQI Q + G+SL EAD++RRAMGKK ++ M++ K  F+  AS+ G     +  +FEL+ K
Sbjct: 711  MQIVQTIGGFSLGEADIIRRAMGKKKRDLMEEYKREFVKRASERGFDAKKSEILFELIEK 770

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA YGFNKSH+AAYA+I++QTA++K +YP EF+AA +T E DN +KI K+  + ++  I+
Sbjct: 771  FAGYGFNKSHSAAYAMITFQTAYLKAYYPQEFMAALLTSEQDNTDKIVKYVDEVKRLGIK 830

Query: 816  IMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            ++PP VN   ++F      G++ I + L AIKGVG +    I+EA  +  F  L DF  R
Sbjct: 831  LLPPDVNLSSLEFNATTIDGEDVILFGLGAIKGVGKSAVLSILEARNEGVFKDLNDFLQR 890

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            +D  K+N++VLE+L+ +GA+D FGYSR  +L  ++ I   +  + + +     ++F   +
Sbjct: 891  IDPNKVNKKVLEALIKSGAMDSFGYSRRTMLLGIEKIVTASHEIARAKKMAENSLFGDAQ 950

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                 K+ LE     +     E E+  LGFY SGHPLD ++  L K+      +      
Sbjct: 951  ELIDIKVELEDLGEYDMKQILEFEKETLGFYVSGHPLDPFRSELEKIHYTLSSDLENIAD 1010

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             +       V   + K + KG++ G V+
Sbjct: 1011 SSEALFVGKVEEIKTKISNKGNKFGIVS 1038


>gi|224531850|ref|ZP_03672482.1| DNA polymerase III subunit alpha [Borrelia valaisiana VS116]
 gi|224511315|gb|EEF81721.1| DNA polymerase III subunit alpha [Borrelia valaisiana VS116]
          Length = 1161

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/977 (40%), Positives = 598/977 (61%), Gaps = 40/977 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  AGI+PI
Sbjct: 21  FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80

Query: 71  IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IG +  +        K  + GK  +     ++LL     GY+ L++L S  YL +     
Sbjct: 81  IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+ LQR
Sbjct: 136 PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194

Query: 189 HRGYDRYRESQVVQ---LAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
           H      +E  +V    + Y+ EL  PL A N+S ++++ED  A D+++ +      S +
Sbjct: 195 HG----IKEQNIVNERLVEYSRELGVPLTAANDSHYVNKEDAVAQDIIVCIGTGAKKSDE 250

Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKEC 300
           +R ++ T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E 
Sbjct: 251 NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEF 310

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
           + + +     L +  + GL+ R               + R  +EL+VI  M F GYFLIV
Sbjct: 311 NTLGEY----LEHLTLDGLKFRYKT-------LTNKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            DFI++A  ++IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360 WDFIKFAHDHDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420 DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
           + P   VSL+ + DD+  +E   + P    L++ +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480 DSPK--VSLKEVLDDNSLKEYFTSKPVYKELMDAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
             VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +  R V  D  +
Sbjct: 538 DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKI 595

Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             IP +D +T+ +L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I
Sbjct: 596 KNIPDNDVKTFKMLGEGRSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFI 655

Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMG
Sbjct: 656 PQFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMG 715

Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           KK ++EM++ K  F+ GA + G  K +A  IFELL  F+ YGFNKSHAAAY++I+YQTA+
Sbjct: 716 KKKEDEMNEMKVDFLRGAIEKGYDKEVASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAY 775

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
           +K +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y 
Sbjct: 776 LKANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYG 835

Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L  IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +
Sbjct: 836 LNGIKNLGGIVVDLIIDEREKNGKYISFEDFVRRVDDKVINKKFLESAIKSGLFDSLDQN 895

Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENE 955
           R  L ++LD + +     + N+     ++F     + +       + F   + S     E
Sbjct: 896 RKTLFENLDQLIEVVSEDKNNKKLGQNSLFDALENQDSIQQSFNYQVFKEYSYSELLGFE 955

Query: 956 QRVLGFYFSGHPLDVYK 972
           + +LGFY SGHPLD YK
Sbjct: 956 KELLGFYVSGHPLDPYK 972


>gi|52081424|ref|YP_080215.1| DNA polymerase III DnaE [Bacillus licheniformis ATCC 14580]
 gi|52786800|ref|YP_092629.1| DNA polymerase III DnaE [Bacillus licheniformis ATCC 14580]
 gi|52004635|gb|AAU24577.1| DNA polymerase III (alpha subunit) [Bacillus licheniformis ATCC
            14580]
 gi|52349302|gb|AAU41936.1| DnaE [Bacillus licheniformis ATCC 14580]
          Length = 1114

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/1037 (38%), Positives = 603/1037 (58%), Gaps = 60/1037 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQVHS YSLL  A S+ ++  K       A+A+TD   ++ A+EF +     GI+PI
Sbjct: 3    FVHLQVHSGYSLLNSAASVEDLTAKAKELGYSAMALTDDEVMYGAVEFYKSCKKRGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    +   +  +++      +P    +VLL  T +GYQ L+++ S +    Q K    
Sbjct: 63   IGLTASVLTDEKEQLS------YP----LVLLAKTNKGYQNLLKISSVL----QSKSKTG 108

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
            I   WL+    EGLI LT G +  ++        + A+   L    +FG+   Y++ Q +
Sbjct: 109  IKEKWLKSY-HEGLIALTTGGTSHVEALLKEGLIEEAKDAALRCLSIFGEGSFYLSYQPY 167

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            +G D     ++++L+    +P+ AT +  ++ +ED  A+  L A+     +++  +    
Sbjct: 168  KG-DPLLSERILELSEHTGIPIAATGDVRYIEKEDAAAYTCLKAIKAGEKLNEDMKAEGD 226

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                LK  +EM+ I+ D P+ALENTV+IA RC   L +    LP++         K  ++
Sbjct: 227  LHLELKPPAEMLDIYRDRPDALENTVKIADRCQVDLSLGQTRLPKYPAPSG----KNADD 282

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L      GL+ R            ++Y +RL +EL VI  M FS YFLIV DF+++A  
Sbjct: 283  YLAELCFLGLKKRFEAAP-------KEYVERLKYELKVIRDMAFSDYFLIVWDFMKFAHD 335

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I  GPGRGS AGS+ AY L ITD+DPL+  LLFERFLNP+R+SMPD DIDF   RRDE
Sbjct: 336  NGIITGPGRGSAAGSLVAYTLFITDVDPLKHKLLFERFLNPERISMPDIDIDFPDTRRDE 395

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YV+NKYG   VAQI TFG+L AKAALRDVGR + +   + D+L KLIP+ P   V+L
Sbjct: 396  VIQYVKNKYGALHVAQITTFGTLAAKAALRDVGRVMGISPKEADQLAKLIPSKPG--VTL 453

Query: 490  QAIADDSRFREARLADPSVDR----------LLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                     +EAR   P +D+          + + +QK+EGL RH S HAAG+V+ + PL
Sbjct: 454  ---------KEARALSPELDKRLNGSKKLQDIFKTAQKIEGLPRHTSIHAAGVVLSEEPL 504

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ--KSLDFLAQRGVKVD 597
            + ++P+ ++    + +TQ++M ++E  GL+K DFLGL+ LTL++  K+L   ++R V +D
Sbjct: 505  TNIIPV-QEGHGGVYLTQYSMGYLEDLGLLKMDFLGLRNLTLIESIKTLIEKSER-VTID 562

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
             S IP+DD +T+ LL    T GIFQLES+GMR  L+ ++P  +EDI+A+ +LYRPGP++N
Sbjct: 563  FSAIPYDDEQTFKLLAEGDTTGIFQLESAGMRNVLKRLKPSSLEDIVAVNALYRPGPMEN 622

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I +Y  RK+G+  +   H  +  +LK+T GVI+YQEQ+M IA  ++G+ L EAD+LRRA+
Sbjct: 623  IPLYIERKHGRVPVSYPHEDLADILKDTYGVIVYQEQIMMIASRMAGFRLGEADLLRRAV 682

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK KE +D ++  FISG  K G S   A  +++L+ KFA+YGFN+SHA AY++I YQ A
Sbjct: 683  GKKNKEILDTERNHFISGCLKKGYSVQAANEVYDLIVKFANYGFNRSHAVAYSMIGYQLA 742

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYP+ F+   +T  + N EK+ ++  +A+   + ++ PS+N     F V +  + Y
Sbjct: 743  YLKAHYPLYFMCGLLTSAIGNEEKLAQYIYEAKGKGLNVLGPSINKSGYPFVVENGALRY 802

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            SL A+KGVG    + I  A  +KPF  L DFC R   K +NR+ +E+L+FAGA+D FG +
Sbjct: 803  SLRAVKGVGIAAVKEIYRARKEKPFADLFDFCVRTSVKSVNRKTIEALIFAGAMDEFGEN 862

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSSVRFENEQ 956
            R  LL S+D   ++A+    +  N     F  E  T   K    E+  + +      +E+
Sbjct: 863  RATLLASVDVALEHAELFAGD--NDQLGFFLDEGLTIKPKYAETEEMPLVD---LLAHEK 917

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LG YFS HPL V++  L + G     + +A+ R     L  ++   +  +T+ G  + 
Sbjct: 918  ETLGIYFSDHPLSVHRKKLDRAGALPIIQLLASGR-KKAALGGLLTRMKTIRTKTGQTMA 976

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++  S+ + E EA  FP
Sbjct: 977  FLELSDESGEMEAVVFP 993


>gi|319647332|ref|ZP_08001554.1| DnaE protein [Bacillus sp. BT1B_CT2]
 gi|317390679|gb|EFV71484.1| DnaE protein [Bacillus sp. BT1B_CT2]
          Length = 1127

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/1037 (38%), Positives = 603/1037 (58%), Gaps = 60/1037 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQVHS YSLL  A S+ ++  K       A+A+TD   ++ A+EF +     GI+PI
Sbjct: 16   FVHLQVHSGYSLLNSAASVEDLTAKAKELGYSAMALTDDEVMYGAVEFYKSCKKRGIKPI 75

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    +   +  +++      +P    +VLL  T +GYQ L+++ S +    Q K    
Sbjct: 76   IGLTASVLTDEKEQLS------YP----LVLLAKTNKGYQNLLKISSVL----QSKSKTG 121

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
            I   WL+    EGLI LT G +  ++        + A+   L    +FG+   Y++ Q +
Sbjct: 122  IKEKWLKSY-HEGLIALTTGGTSHVEALLKEGLIEEAKDAALRCLSIFGEGSFYLSYQPY 180

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            +G D     ++++L+    +P+ AT +  ++ +ED  A+  L A+     +++  +    
Sbjct: 181  KG-DPLLSERILELSEHTGIPIAATGDVRYIEKEDAAAYTCLKAIKAGEKLNEDMKAEGD 239

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                LK  +EM+ I+ D P+ALENTV+IA RC   L +    LP++         K  ++
Sbjct: 240  LHLELKPPAEMLDIYRDRPDALENTVKIADRCQVDLSLGQTRLPKYPAPSG----KNADD 295

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L      GL+ R            ++Y +RL +EL VI  M FS YFLIV DF+++A  
Sbjct: 296  YLAELCFLGLKKRFEAAP-------KEYVERLKYELKVIRDMAFSDYFLIVWDFMKFAHD 348

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I  GPGRGS AGS+ AY L ITD+DPL+  LLFERFLNP+R+SMPD DIDF   RRDE
Sbjct: 349  NGIITGPGRGSAAGSLVAYTLFITDVDPLKHKLLFERFLNPERISMPDIDIDFPDTRRDE 408

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YV+NKYG   VAQI TFG+L AKAALRDVGR + +   + D+L KLIP+ P   V+L
Sbjct: 409  VIQYVKNKYGALHVAQITTFGTLAAKAALRDVGRVMGISPKEADQLAKLIPSKPG--VTL 466

Query: 490  QAIADDSRFREARLADPSVDR----------LLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                     +EAR   P +D+          + + +QK+EGL RH S HAAG+V+ + PL
Sbjct: 467  ---------KEARALSPELDKRLNGSKKLQDIFKTAQKIEGLPRHTSIHAAGVVLSEEPL 517

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ--KSLDFLAQRGVKVD 597
            + ++P+ ++    + +TQ++M ++E  GL+K DFLGL+ LTL++  K+L   ++R V +D
Sbjct: 518  TNIIPV-QEGHGGVYLTQYSMGYLEDLGLLKMDFLGLRNLTLIESIKTLIEKSER-VTID 575

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
             S IP+DD +T+ LL    T GIFQLES+GMR  L+ ++P  +EDI+A+ +LYRPGP++N
Sbjct: 576  FSAIPYDDEQTFKLLAEGDTTGIFQLESAGMRNVLKRLKPSSLEDIVAVNALYRPGPMEN 635

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I +Y  RK+G+  +   H  +  +LK+T GVI+YQEQ+M IA  ++G+ L EAD+LRRA+
Sbjct: 636  IPLYIERKHGRVPVSYPHEDLADILKDTYGVIVYQEQIMMIASRMAGFRLGEADLLRRAV 695

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK KE +D ++  FISG  K G S   A  +++L+ KFA+YGFN+SHA AY++I YQ A
Sbjct: 696  GKKNKEILDTERNHFISGCLKKGYSVQAANEVYDLIVKFANYGFNRSHAVAYSMIGYQLA 755

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYP+ F+   +T  + N EK+ ++  +A+   + ++ PS+N     F V +  + Y
Sbjct: 756  YLKAHYPLYFMCGLLTSAIGNEEKLAQYIYEAKGKGLNVLGPSINKSGYPFVVENGALRY 815

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            SL A+KGVG    + I  A  +KPF  L DFC R   K +NR+ +E+L+FAGA+D FG +
Sbjct: 816  SLRAVKGVGIAAVKEIYRARKEKPFADLFDFCVRTSVKSVNRKTIEALIFAGAMDEFGEN 875

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSSVRFENEQ 956
            R  LL S+D   ++A+    +  N     F  E  T   K    E+  + +      +E+
Sbjct: 876  RATLLASVDVALEHAELFAGD--NDQLGFFLDEGLTIKPKYAETEEMPLVD---LLAHEK 930

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LG YFS HPL V++  L + G     + +A+ R     L  ++   +  +T+ G  + 
Sbjct: 931  ETLGIYFSDHPLSVHRKKLDRAGALPIIQLLASGR-KKAALGGLLTRMKTIRTKTGQTMA 989

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++  S+ + E EA  FP
Sbjct: 990  FLELSDESGEMEAVVFP 1006


>gi|237736354|ref|ZP_04566835.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC
           9817]
 gi|229421396|gb|EEO36443.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC
           9817]
          Length = 1138

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/980 (39%), Positives = 600/980 (61%), Gaps = 39/980 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +FVHL +H+ YSLL+G   +++ L +       AIAITD  NLF ALEF +KA   GI+P
Sbjct: 4   NFVHLHLHTEYSLLDGVGKIDDYLGRAKELGMQAIAITDHGNLFGALEFYKKARKKGIKP 63

Query: 70  IIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG- 125
           IIG +  +    M+D      +G+        ++LL    EGY+ L+++ S  ++  +G 
Sbjct: 64  IIGMEAYVCERGMEDK-----EGRNF-----HLILLARDNEGYRNLLKISSESFI--RGF 111

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSSQVAEKRLLTFKKLFG-DRLY 183
               R+  ++L+E  +EGLI L+    G I R      S       +  +  +FG +  +
Sbjct: 112 YYKPRVDKNFLKE-HSEGLIALSACMQGEISRRILDMESEDKISSAIDEYVDIFGKENFF 170

Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           + +Q +   +++    ++ ++A  + L LVATN++ +++E ++   D+L+ V     +S 
Sbjct: 171 IEVQANGIKEQFELNEKLYEIAKQNNLKLVATNDTHYVNEGEHTLQDILICVQTGAKLSD 230

Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
           + R R+ T + +LK+R +++    +   EA++NT+ IA RC+  ++      P +    C
Sbjct: 231 EKRMRIETEELFLKSREQVLGQLGEKYLEAVDNTIIIAERCNVDIEFGHFKFPDYKIPTC 290

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
               K  E  LR     GL  R   G        +   +R+++EL +I +M ++GYF++V
Sbjct: 291 ---VKTIEAFLRKLVYLGLSKRYPHGL------TKSIVERVEYELGIIEKMGYAGYFVVV 341

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            DFI +A++ NIP+GPGRGS AGS+ AYAL IT +DPL+++L+FERFLNP+R+SMPD DI
Sbjct: 342 WDFIDFARRKNIPIGPGRGSAAGSLIAYALGITQLDPLKYNLIFERFLNPERISMPDIDI 401

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           D CQ+RR EVI YV  KYG ++VAQIITFG+++A+AA+RDVGR L  P S++D + KL+P
Sbjct: 402 DICQERRQEVIDYVIEKYGADKVAQIITFGTMKARAAIRDVGRVLNTPLSKIDAVAKLVP 461

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +     +L+ + +   FR+  L D  + ++++IS K+E   RHAS HAAGIVI   PL+
Sbjct: 462 FNATIKQTLEGVEE---FRKQYLEDREIQKVIDISAKIENKVRHASVHAAGIVITKDPLT 518

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599
             VP+Y D ++ +  TQ+ MK +E  GL+K DFLGL+ LT LQ+++D++ +  G ++ L 
Sbjct: 519 DTVPLYCDTKNKVVSTQYQMKELEDLGLLKMDFLGLRNLTNLQRTIDYIKEDLGEEIRLE 578

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP +  + Y LL+   T G+FQ+ES G+R+ L  ++PD  EDIIAL++LYRPGP+ + +
Sbjct: 579 DIPLNSKKVYELLSRGDTSGVFQMESVGIRKILVKLKPDKFEDIIALLALYRPGPLGSGM 638

Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           V  + N KNG  +I   HP ++  LKET GVI+YQEQVM+IA +++GYSL EAD+LRRAM
Sbjct: 639 VDDFINGKNGITEIKYPHPSLEQTLKETYGVILYQEQVMKIANIMAGYSLGEADLLRRAM 698

Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
           GKK  + M++ +E+FI+ + +NG S+  A+ +FEL+ KFA YGFNKSH+AAYA+I+Y TA
Sbjct: 699 GKKNVQIMEENREKFITRSIENGYSEEKALEMFELIDKFAGYGFNKSHSAAYALIAYWTA 758

Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
           + K HY   + AA MT EM ++E I  +  DA+  N+++  P VN     F V  + I +
Sbjct: 759 YFKAHYMKHYYAALMTSEMAHIEDIAYYVDDAKVHNLKLHLPDVNRATSKFIVDKDGIVF 818

Query: 838 SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
           SLAAIK VG   +  I+E  + +  + +LEDF  R     LN++ LESL+ AGALD    
Sbjct: 819 SLAAIKNVGEGVSEKILEEYNENGEYKNLEDFVVRTKKYGLNKKALESLILAGALDGLPG 878

Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
           +R Q  +S+D I  YA    K    +  N+F   K +     TL + +  +       E+
Sbjct: 879 NRRQKFESVDKIIDYANRKLKEDDIQQMNLFGEAKSSLG-VFTLPQVTEYSLDELLSKEK 937

Query: 957 RVLGFYFSGHPLDVYKPILR 976
             LGFYFS HPLD Y+ +++
Sbjct: 938 EYLGFYFSAHPLDSYRRLIK 957


>gi|205374532|ref|ZP_03227328.1| DNA polymerase III DnaE [Bacillus coahuilensis m4-4]
          Length = 1115

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/1034 (38%), Positives = 615/1034 (59%), Gaps = 55/1034 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQV S+YSLLE  +S+  ++ K  +D    +A+TD N ++  + F Q+   AGIQP
Sbjct: 2    SFVHLQVWSAYSLLESTISIEKLVQKAKSDGYTHLALTDKNVMYGVIPFYQECRKAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG   DI   D+            T+  +VLL  T  GY+ L+++ S +    Q K   
Sbjct: 62   IIGVTADILHDDD------------TIHPLVLLAETERGYRNLMKISSVI----QTKPEG 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
             I   WL+    EGLI +T G  G I+      + + A+K + ++  +F     Y+++Q 
Sbjct: 106  AIPFKWLKGY-KEGLIAITPGEDGKIEDELTNGAVEAAKKTIYSYLSIFSSHNFYLSIQW 164

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                  + +S++ QL      P++ ++   +L++E+  A + L+A+     +S+ DR  +
Sbjct: 165  QT---THIQSELKQLGKETSTPILCSHPVRYLTKEEAFAQECLLAIRDGKKLSEDDRTIL 221

Query: 249  TPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              + Y  K+ SEMV +FS     L+NTV +A+RC   + +   +LP++  KE        
Sbjct: 222  PSNEYDFKSPSEMVELFSTEWGCLQNTVSVAKRCHIEIPLQQSLLPKYPLKEG----TSP 277

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + L +    GL+ R+        YH   Y +RL +EL++I  M+F  YFLIV DF+++A
Sbjct: 278  IDALSSLCKKGLKERVP-------YHHHTYVERLQYELSIIENMQFEDYFLIVWDFMKYA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++++I  GPGRGS AGS+ AY L ITD+DP+   LLFERFLNP+R+SMPD DIDF   RR
Sbjct: 331  REHDIVTGPGRGSAAGSLVAYVLHITDVDPIEHHLLFERFLNPERVSMPDIDIDFPDHRR 390

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI+YV++KYG   VAQI+TFG+   KAALRDV R+      +++RL +++P  P   +
Sbjct: 391  DEVIQYVKDKYGELHVAQIVTFGTYGVKAALRDVARSFGFNTKEMERLSRMVPTTPGTTL 450

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             ++A  +  + +E         +L + +  LEGL RH STHAAG+VI +RPL  +VP+ +
Sbjct: 451  -VKAYRESKQLQEFIKESDLHQKLYKTAVLLEGLPRHTSTHAAGVVISERPLVDIVPI-Q 508

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ---KSLDFLAQRGVKVDLSLIPFD 604
               + + +TQ++M  +E+ GL+K DFLGL+ LT+L+   K+++  ++   K+D   I  +
Sbjct: 509  TGSNGIYLTQYSMTVLEEIGLLKMDFLGLRNLTILEQLVKTINRYSKEEFKLDQ--IDQN 566

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL+   T GIFQLES GMR+ L  ++P   EDI+A+ +LYRPGP++NI  Y  R
Sbjct: 567  DSKTFELLSKGDTSGIFQLESEGMRKVLLSLKPSGFEDIVAVNALYRPGPMENIPDYVER 626

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G++ I SIHP ID +L  T+GVI+YQEQ+MQIA +++G+SL EAD+LRRA+ KK  + 
Sbjct: 627  KHGRKPIPSIHPDIDSILNVTKGVIVYQEQIMQIASVMAGFSLGEADLLRRAVSKKKADV 686

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + K++E F+ GA+  G    +A  +++L+ KFA+YGFN+SHA AY++ISYQ A++K H+P
Sbjct: 687  LQKEREHFVQGATAKGYPVKLANEVYDLIVKFANYGFNRSHAVAYSMISYQLAYIKAHFP 746

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
              FLAA +T  + N +K+  +  +AR+ NI +  PS+N     F    N I YSL AI+G
Sbjct: 747  SYFLAALLTSVIGNEDKVAAYIHEARKKNIDLFSPSINRSYYSFFATKNGITYSLGAIRG 806

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG    + I+ A  +KPF+ L DFC RVDSK +NR+ +ESL++AGALD F   R  LL S
Sbjct: 807  VGVKAYQEILRARNEKPFEDLMDFCLRVDSKVVNRKTIESLIYAGALDEFKKDRAVLLAS 866

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE----NSSVRFENEQRVLG 960
            LD    ++  ++   ++    +F  E     D + L    VE     + ++ + E+ VLG
Sbjct: 867  LDAALDHSDLLKPKGSDF--ALFDEE-----DMLLLRPKYVEIEPMPTDIKLQYEREVLG 919

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y S HPL  ++ + R++G     ++ +     ++I   + V   +  +T+KG  + +V 
Sbjct: 920  IYLSDHPLRQFEGLQRRIGALPLSDTPIGKKEHDHIVYLSEV---KPIRTKKGDVMAFVK 976

Query: 1020 FSEPAKEYEANFFP 1033
             ++   E +   FP
Sbjct: 977  LTDQTGEVDGVVFP 990


>gi|226953025|ref|ZP_03823489.1| DNA polymerase III, alpha chain [Acinetobacter sp. ATCC 27244]
 gi|226836232|gb|EEH68615.1| DNA polymerase III, alpha chain [Acinetobacter sp. ATCC 27244]
          Length = 1187

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/1013 (38%), Positives = 590/1013 (58%), Gaps = 48/1013 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++     D+ PA+A+TD +NL +A++F +     GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRIPDLVKAAINDEMPALALTDLSNLHAAVKFYEACLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + ++  ++                  LL  +  G++ L E+VSR ++  +G+Q   
Sbjct: 63   LGSVIRLNDAEH---------------RATLLAMSNTGWRNLTEIVSRGFI--EGQQLSI 105

Query: 131  ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             C+   W+ E  +E LI+L G  S  + +    ++ Q AE  L  + + FG+R+Y+ L R
Sbjct: 106  PCVQKEWVLE-QSEDLIILLGQHSD-VGKMLCSSNPQKAEPLLEAWIEKFGNRVYLALTR 163

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +     + V+LA  +++ +VA N+  F+ ++D+ AH+  + +A   V+    RP+
Sbjct: 164  TERAGEEDFIQEAVKLAAKYQIGVVAHNDIHFIEKDDFYAHEARVCIADGYVLGDDKRPK 223

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P+ Y K   +M  +FSD+P A+ENT  +A+RC+  LQ+    LP F   +   I   
Sbjct: 224  NYSPEQYFKTGQQMSELFSDIPSAIENTYYVAQRCNVALQLGTYFLPDFPIPDGYTIDTY 283

Query: 307  EENELRNKAVAGLEVRLAQ--GAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIV 360
             E+  R     GLE RL        +    +D    Y +R+ +E+++I +M F GYFLIV
Sbjct: 284  FEHLSRQ----GLEERLNHLYPISERDEDWEDIRKPYDERIKYEVDIILKMGFPGYFLIV 339

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+
Sbjct: 340  MDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDV 399

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC   RD VI YV   YG + V+QI TFG++ AK A+RDV R L   Y   DR+ K++P
Sbjct: 400  DFCIAGRDRVIEYVAQNYGRQAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVP 459

Query: 481  NDPAHPVSLQAIADDSRFRE--ARLADPSVD---RLLEISQKLEGLYRHASTHAAGIVIG 535
              P       AI  + + ++     ++P  D    + E++ KLEG+ R+   HA G+VI 
Sbjct: 460  TKPLGVDLATAIDMEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIA 519

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--- 592
               ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +R   
Sbjct: 520  PGKITDYSAVLCDPDGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIKS 579

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               ++++ +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRP
Sbjct: 580  ETPLEIANVPLDDKDAYLVFAEANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRP 639

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP+D I  + +R +G E    +HPL++ +L+ T G+++YQEQVMQ AQ  +GY+L  AD+
Sbjct: 640  GPMDLIPDFIHRMHGGE-FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADL 698

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  EEM KQ++ FI GA++  I +  A +IF+ + KFA YGFNKSHAAAYA++
Sbjct: 699  LRRAMGKKKPEEMVKQRQIFIKGAAEKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALV 758

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +Y TAW+K HYP EF+AA ++ EM N + I     D R   ++++PPSVN     F   D
Sbjct: 759  AYHTAWLKAHYPSEFMAAVLSSEMQNTDSIVFLIDDCRNNKLEVLPPSVNMSLYHFHASD 818

Query: 833  NR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             R I Y L AIKGVG    + ++++   + P+  L DFC R+D KK+N+R LE+L+ AGA
Sbjct: 819  ERTIVYGLGAIKGVGEQAMQSVIDSRIKEGPYKDLFDFCHRIDLKKINKRTLEALIRAGA 878

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSS 949
            LDC G  R  L+  L    + A+    NR     ++F   E+        ++ +S E   
Sbjct: 879  LDCLGIERSSLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEVQRKPAKPVKPWSDE--- 935

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            VR + E+  LG Y +GHP+DVY+  L+        E   T RG     A +VV
Sbjct: 936  VRLKGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNELTPTRRGVTTVFAGLVV 988


>gi|294650615|ref|ZP_06727970.1| DNA-directed DNA polymerase III alpha subunit [Acinetobacter
            haemolyticus ATCC 19194]
 gi|292823498|gb|EFF82346.1| DNA-directed DNA polymerase III alpha subunit [Acinetobacter
            haemolyticus ATCC 19194]
          Length = 1187

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/1013 (38%), Positives = 590/1013 (58%), Gaps = 48/1013 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++     D+ PA+A+TD +NL +A++F +     GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRIPDLVKAAINDEMPALALTDLSNLHAAVKFYEACLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + ++  ++                  LL  +  G++ L E+VSR ++  +G+Q   
Sbjct: 63   LGSVIRLNDAEH---------------RATLLAMSNTGWRNLTEIVSRGFI--EGQQLSI 105

Query: 131  ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             C+   W+ E  +E LI+L G  S  + +    ++ Q AE  L  + + FG+R+Y+ L R
Sbjct: 106  PCVQKEWVLE-QSEDLIILLGQHSD-VGKMLCSSNPQKAEPLLEAWIEKFGNRVYLALTR 163

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +     + V+LA  +++ +VA N+  F+ ++D+ AH+  + +A   V+    RP+
Sbjct: 164  TERAGEEDFIQEAVKLAAKYQIGVVAHNDIHFIEKDDFYAHEARVCIADGYVLGDDKRPK 223

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P+ Y K   +M  +FSD+P A+ENT  +A+RC+  LQ+    LP F   +   I   
Sbjct: 224  NYSPEQYFKTGQQMSELFSDIPSAIENTYYVAQRCNVALQLGTYFLPDFPIPDGYTIDTY 283

Query: 307  EENELRNKAVAGLEVRLAQ--GAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIV 360
             E+  R     GLE RL        +    +D    Y +R+ +E+++I +M F GYFLIV
Sbjct: 284  FEHLSRQ----GLEERLNHLYPISERDEDWEDIRKPYDERIKYEVDIILKMGFPGYFLIV 339

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+
Sbjct: 340  MDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDV 399

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC   RD VI YV   YG + V+QI TFG++ AK A+RDV R L   Y   DR+ K++P
Sbjct: 400  DFCIAGRDRVIEYVAQNYGRQAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVP 459

Query: 481  NDPAHPVSLQAIADDSRFRE--ARLADPSVD---RLLEISQKLEGLYRHASTHAAGIVIG 535
              P       AI  + + ++     ++P  D    + E++ KLEG+ R+   HA G+VI 
Sbjct: 460  TKPLGVDLATAIDMEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIA 519

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--- 592
               ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +R   
Sbjct: 520  PGKITDYSAVLCDPDGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIKS 579

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               ++++ +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRP
Sbjct: 580  ETPLEIANVPLDDKDAYLVFAEANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRP 639

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP+D I  + +R +G E    +HPL++ +L+ T G+++YQEQVMQ AQ  +GY+L  AD+
Sbjct: 640  GPMDLIPDFIHRMHGGE-FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADL 698

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  EEM KQ++ FI GA++  I +  A +IF+ + KFA YGFNKSHAAAYA++
Sbjct: 699  LRRAMGKKKPEEMVKQRQIFIKGAAEKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALV 758

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +Y TAW+K HYP EF+AA ++ EM N + I     D R   ++++PPSVN     F   D
Sbjct: 759  AYHTAWLKAHYPSEFMAAVLSSEMQNTDSIVFLIDDCRNNKLEVLPPSVNMSLYHFHASD 818

Query: 833  NR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             R I Y L AIKGVG    + ++++   + P+  L DFC R+D KK+N+R LE+L+ AGA
Sbjct: 819  ERTIVYGLGAIKGVGEQAMQSVIDSRIKEGPYKDLFDFCHRIDLKKINKRTLEALIRAGA 878

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSS 949
            LDC G  R  L+  L    + A+    NR     ++F   E+        ++ +S E   
Sbjct: 879  LDCLGIERSSLMTQLPEAVQAAEQARSNRETGIMDLFGEVEEVQRKPAKPVKPWSDE--- 935

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            VR + E+  LG Y +GHP+DVY+  L+        E   T RG     A +VV
Sbjct: 936  VRLKGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNELTPTRRGVTTVFAGLVV 988


>gi|216263511|ref|ZP_03435506.1| DNA polymerase III subunit alpha [Borrelia afzelii ACA-1]
 gi|215980355|gb|EEC21176.1| DNA polymerase III subunit alpha [Borrelia afzelii ACA-1]
          Length = 1161

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/1019 (39%), Positives = 613/1019 (60%), Gaps = 33/1019 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  AGI+PI
Sbjct: 21   FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80

Query: 71   IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IG +  +        K  + GK  +     ++LL     GY+ L++L S  YL +     
Sbjct: 81   IGIEAYMAKTSKFLKKHDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+ LQR
Sbjct: 136  PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+     ++V+ +    +PL   N+S +++ ED  A D+++ +      S ++R +
Sbjct: 195  HGIKDQDIVNERLVEYSKELGVPLTVANDSHYVNREDASAQDIIVCIGTGAKKSDENRLK 254

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECDDIQ 304
            + T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E + + 
Sbjct: 255  METNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIEFNTLG 314

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +     L    + GL+ R               + R  +EL+VI RM F GYFLIV DFI
Sbjct: 315  EY----LEYLTLEGLKFRYKT-------LTSKIKDRAFYELSVIIRMGFEGYFLIVWDFI 363

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A  ++IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDIDFC 
Sbjct: 364  KFAHDHDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDIDFCF 423

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + RDE+I+YV NKYG ++VAQIITFG+L+AKA ++DV R L +P+++ + L K IP+ P 
Sbjct: 424  EGRDEIIKYVTNKYGEDKVAQIITFGTLKAKAVVKDVARVLDIPFAESNELTKFIPDGPK 483

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+  VP
Sbjct: 484  --VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTDYVP 541

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IP 602
            +Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +  R V  D  +  IP
Sbjct: 542  LYKDYKQGSISTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIKNIP 599

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D +T+ +L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  + 
Sbjct: 600  DNDVKTFKMLGEGRSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQFI 659

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK +
Sbjct: 660  AAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKKE 719

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            +EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHA AY++I+YQTA++K +
Sbjct: 720  DEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAVAYSLIAYQTAYLKAN 779

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L  I
Sbjct: 780  YPEYFMAANLTNEINNNDKLSYYIEESKAMGINVLKPDINRSFREFRVTDSGISYGLNGI 839

Query: 843  KGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R  L
Sbjct: 840  KNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLNQNRKTL 899

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
             ++LD + +     + N+     ++F     + +       +     + S     E+ +L
Sbjct: 900  FENLDRLIEVVSEDKNNKRLGQNSLFDVLESQESIQQSFNYQVLKEYSYSELLGFEKELL 959

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT-RKGSRIGW 1017
            GFY SGHPLD YK  +         + +A  + + ++ + ++ S +  +T R  SR+ +
Sbjct: 960  GFYVSGHPLDPYKKAINNFSSLNVLKDLAAKKDSIVQFSGILNSVKIIQTKRNNSRMAF 1018


>gi|300853524|ref|YP_003778508.1| DNA polymerase III subunit alpha [Clostridium ljungdahlii DSM
           13528]
 gi|300433639|gb|ADK13406.1| DNA polymerase III, alpha subunit [Clostridium ljungdahlii DSM
           13528]
          Length = 1158

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/995 (38%), Positives = 586/995 (58%), Gaps = 72/995 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +V L  H+ YSLL+ +  +  ++ +       ++AITD   ++  +EF ++A A GI+PI
Sbjct: 8   WVSLHQHTEYSLLDSSAKIPELIARAKELGMDSMAITDHGVMYGCVEFYKEARAQGIKPI 67

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129
           IGC++ +   D     N GK        +VLLV   EGYQ L+++VS   +  +G     
Sbjct: 68  IGCEIYVSQGDMTIKQNNGKN---ENYHLVLLVKNEEGYQNLMKIVSTASI--KGFYYKP 122

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           R+  ++L+   +EGLI L+   SG +       +   AE+  L +K  F D  Y+ +Q H
Sbjct: 123 RVDHNYLKN-HSEGLIALSACMSGEVQSNILKGNIDKAEETALFYKSAFKDGFYLEIQYH 181

Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               + +   Q++ ++    +PLVATN+  ++ +EDY AHD+L+ +     V +++R R 
Sbjct: 182 GIEAQLKINEQLISMSKKLNIPLVATNDVHYIKKEDYRAHDILLCIQTGKTVDEENRMRY 241

Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             D  YLK+  EM  +FS++PE+LENT++IA +C+F  + H   LP+F   E  D  +  
Sbjct: 242 PSDEFYLKSPDEMYDMFSNVPESLENTIKIADQCNFDYEFHKSKLPKFPLPEDTDPYEYM 301

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
           ++             L    + K Y+    + + RL++EL +I +M +  YFLIV DFI+
Sbjct: 302 KD-------------LCYKGLYKRYNDVTDELKSRLEYELGIIKKMGYVDYFLIVWDFIR 348

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+KN I  GPGRGSGAGS+ AY L IT IDP+++ L+FERFLNP+R+SMPD D DFC +
Sbjct: 349 FARKNGIMTGPGRGSGAGSIVAYTLEITKIDPIKYKLIFERFLNPERVSMPDIDSDFCYE 408

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR EVI YV  KYG + V+QIITFG++ AK  +RDVGRA+   Y +VDR+ K+IP+ P  
Sbjct: 409 RRGEVIDYVVEKYGKDSVSQIITFGTMAAKMCIRDVGRAMNYSYGEVDRIAKMIPSIPNI 468

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            +  +A+  +  F+EA  ++     L++I++ LEGL RH STHAAG+VI   PL   VP+
Sbjct: 469 TID-KALDMNPEFKEAYDSESRTKELIDIARALEGLPRHTSTHAAGVVIASEPLVNYVPL 527

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
            ++   D  VTQF M  +E+ GL+K DFLGL+TLT+L+ +++ + + +G+++DL  I +D
Sbjct: 528 QKN--EDNIVTQFTMNTLEELGLLKMDFLGLRTLTVLRDAVEMIKEDKGIEIDLDTIDYD 585

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D   Y+++    T+G+FQLES G    ++ ++PD +EDIIA +SLYRPGP+  I  Y   
Sbjct: 586 DKAVYNMIGEGKTVGVFQLESPGFSSFMKELKPDSLEDIIAGISLYRPGPMSEIPKYIKN 645

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           KN  E I  + P ++ +L  T G ++YQEQVMQI + L+GYS+  +D++RRAM KK    
Sbjct: 646 KNNPEGIEYVTPQLEHILSVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHHV 705

Query: 725 MDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           M++++  F            + G  +NGIS+ IA +IF+ +  FA Y FNKSHAAAYAV+
Sbjct: 706 MEEERHNFVYGIVDEKGEIQVPGCVRNGISEKIANDIFDSMMDFASYAFNKSHAAAYAVV 765

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
           +++TA++  +YP EF AA +     + EK+  + + A+   I+IMPPS+N  C  F V D
Sbjct: 766 AFRTAYLMYYYPTEFTAAMLNSVKGDSEKVAYYIRFAKSIGIEIMPPSINESCTKFTVED 825

Query: 833 NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             I + L+AIK VG      I+ + S    F  + DFC+ +D   +N+RV+ESL+ AGA 
Sbjct: 826 GNIRFGLSAIKNVGENVIDSIVRSRSKHGKFKDIVDFCNSIDLDSINKRVVESLIKAGAF 885

Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSV 950
           DCFG  R QL+   + +               +++    K     +++L  FS +E+SSV
Sbjct: 886 DCFGVLRSQLIAVHEKVI--------------DSVINSRKKNIEGQVSL--FSQIEDSSV 929

Query: 951 RFEN--------------EQRVLGFYFSGHPLDVY 971
           R +               E+ + G Y SGHPLD Y
Sbjct: 930 RIKYPSIEEFKKLDMLAMEKEMTGLYLSGHPLDEY 964


>gi|323702832|ref|ZP_08114491.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
            574]
 gi|323532220|gb|EGB22100.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
            574]
          Length = 1189

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/1021 (39%), Positives = 605/1021 (59%), Gaps = 54/1021 (5%)

Query: 43   AIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDI---DMQDNL-KMTNQGKTPFPTVPS 98
            A+A+TD   +F A+EF +     GI+PI+GC++ +    M D + K+ +Q       +  
Sbjct: 21   ALALTDHGCMFGAVEFYKTCHQEGIKPILGCEVYVAPRSMTDRIPKLDDQ-------LYH 73

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +VLL    EGY+ L++LVS  Y  +      R+    L     +GLI L+G  +G + + 
Sbjct: 74   LVLLAENQEGYKNLLKLVSLGYT-EGFYYKPRVDKQTLARY-HKGLIALSGCVAGEVAQR 131

Query: 159  FFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATN 215
                 SQ A +    +  +FG +  ++ LQ H G+   +    +++++A   +LPLVATN
Sbjct: 132  ILSGQSQQARQAARDYVDIFGPNNYFLELQDH-GFQEQKTVNRELLRIAGDMQLPLVATN 190

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENT 274
            +  +L  E     DVL+ +     V+   R +  + + YLKN  EM  +F ++PEAL NT
Sbjct: 191  DVHYLKREHAYIQDVLLCIQTGKSVNTPGRMKFASQEMYLKNPHEMNLVFGEIPEALTNT 250

Query: 275  VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
            V IA RC   L+     LP F   E         + LR    AG   R        G+ +
Sbjct: 251  VRIAERCHVELEFGKLHLPYFTVPEG----YTPASYLRELCEAGAVKRY-------GHCS 299

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
               ++RLD+EL VI +M +  YFLIV DFI++A++  I VGPGRGS AGS+ +Y L IT 
Sbjct: 300  GPVKERLDYELKVIGQMGYDEYFLIVWDFIKFARERGIGVGPGRGSAAGSIVSYVLGITS 359

Query: 395  IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
            +DPLR+ LLFERFLNP+R+SMPD D+DF  +RR EVI Y+  KYG +RVAQIITFG++ A
Sbjct: 360  LDPLRYGLLFERFLNPERISMPDIDVDFDFERRGEVIEYIVQKYGTDRVAQIITFGTMAA 419

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            +AA+RDVGRAL M Y +VDR+ KL+P +    ++ +A+A     + A   DP V RL++ 
Sbjct: 420  RAAIRDVGRALDMSYGEVDRVAKLVPGELNMTIA-KALASSPELKAAYDHDPEVKRLVDT 478

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            + +LEG+ RHASTHAAG+VI   PL + +P+++     L  TQF M  +E+ GL+K D L
Sbjct: 479  AAELEGMPRHASTHAAGVVISRDPLVEYLPLHK-AADGLVTTQFPMGTVEELGLLKMDLL 537

Query: 575  GLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT++ ++++ + Q RG  +D++ I  DD  TY++L     +G+FQLESSGMR  L+
Sbjct: 538  GLRNLTVINEAVNLIKQTRGRALDMNAIALDDQTTYNMLARGEGVGVFQLESSGMRNILK 597

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
             ++P   EDI+ALV+LYRPGP+ + +V  +  RK+G  K    HP ++P+LKET GVI+Y
Sbjct: 598  ELKPSAFEDIVALVALYRPGPLGSGMVEDFIQRKHGLTKPDYFHPDLEPILKETYGVILY 657

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF----------------ISG 735
            QEQVM IA++++GY+L +AD LR+AMGKKI E M   ++ F                I G
Sbjct: 658  QEQVMMIARVMAGYTLGQADALRKAMGKKIPEIMAMHRQWFIHGTTVDEKGKPLKSPIPG 717

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A   G    +A  +F+L+  FA YGFNKSH+AAYA++SYQTA++K +Y VE++AA +T  
Sbjct: 718  AVARGYDVALAEKMFDLMEYFAGYGFNKSHSAAYALVSYQTAYLKANYGVEYMAALLTSV 777

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
             DN +K+  + ++ R+  IQ++PP +N    +F V +  I + LAA+K VG    + I+ 
Sbjct: 778  RDNTDKVVIYIEECRRMGIQVLPPDINQSRENFTVVNGAIRFGLAAVKNVGLGAVQEIIR 837

Query: 856  A-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
            A   D  F S  DFCSR+D++ +NRRVLESL+ AGALD FG+ R QLL+ LD+  + A  
Sbjct: 838  AREKDGDFTSFTDFCSRLDTRVVNRRVLESLIKAGALDQFGH-RAQLLKGLDDGLELAAR 896

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYK 972
            V+++R     ++F        + + +    V+  ++R   + E+  LG Y SGHPL  + 
Sbjct: 897  VQRDRNQGQVSLFDLMTDKAEEAMEIPLPDVQPLTIREQLQLEKETLGLYISGHPLAEFN 956

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++  +  +   E +  + G  + + + +V+ ++  +RKG  + + T  +     E   F
Sbjct: 957  WLMEALEARRIVELLEAMDGQPVLVVSNIVTIKRITSRKGDLMAFATVEDLTGNCEVVIF 1016

Query: 1033 P 1033
            P
Sbjct: 1017 P 1017


>gi|19704718|ref|NP_604280.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
            nucleatum ATCC 25586]
 gi|19715034|gb|AAL95579.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
            nucleatum ATCC 25586]
          Length = 1133

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/1027 (38%), Positives = 610/1027 (59%), Gaps = 69/1027 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSL EG  S+++ L K       ++A+TD  N+F A+EF QKA   GI+P
Sbjct: 4    NFVHLNLHTEYSLSEGVNSIDSFLVKAKELGMTSLAVTDYANMFCAIEFYQKAKKMGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L I  +D              + S+ LL     GY+ L++L S +Y  ++ ++ +
Sbjct: 64   IIGLELPITNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRE-L 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFG-DRLYVNLQ 187
            ++    L+E  ++ LI L+   +G I +A   NSS     +++  + ++F  +  Y+ +Q
Sbjct: 112  KLNKEILKE-HSQDLIALSSSMNGEIGKAILTNSSDEKVNKIIDEYIEIFSKENFYLEIQ 170

Query: 188  RHRGYDRYRESQVVQ-----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                 +   E++++      LA  H+L LVATNN  ++  + YE  D+++ +     V +
Sbjct: 171  A----NELSETKIINDKFYDLAKFHDLELVATNNVYYVDRDGYELQDIIICIQSGLKVKE 226

Query: 243  KDRPR-VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            K+R R ++ + YLK++ EM     +   +A+EN   IA  C+  +       P +     
Sbjct: 227  KNRKRAISKELYLKSKDEMKRFLGEKFEKAIENANYIASLCNIEITFGNLQFPYY----- 281

Query: 301  DDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYH---AQDYRQRLDFELNVIARMKFS 354
             ++  E          +G++  L       I K Y     +D   RL++EL+VI +M +S
Sbjct: 282  -EVPSE---------YSGMDEYLKTICHTNIKKLYKEDLTKDILDRLEYELSVIIKMGYS 331

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYF++V DFI +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+S
Sbjct: 332  GYFIVVWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERIS 391

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD DID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+
Sbjct: 392  MPDIDIDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDK 451

Query: 475  LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            L KL+    +H  +L+  + ++    +    D  + ++++++ ++E   RH STHAAGI+
Sbjct: 452  LAKLV----SHSQTLEKTLKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGIL 507

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
            I    L + VP+Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + +
Sbjct: 508  ITKEDLDRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNVQRTIDYIKKYK 567

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             + +DL  IP DD + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRP
Sbjct: 568  NIDIDLYKIPLDDKKVFQMLSLGDSTGVFQLESTGIRKIMKRLKPDKFEDIVALLALYRP 627

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+ + +V  + NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EA
Sbjct: 628  GPLQSGMVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEA 687

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK    M + +E+FI  A KNG +   +  IFEL+ KFA YGFNKSH+ AYA
Sbjct: 688  DLLRRAMGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYA 747

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +ISY TA+ K HYP  + AA MT E+     I  +  DA++  I+I  P++N+P   F+V
Sbjct: 748  MISYWTAYFKVHYPAYYYAAVMTSEISETGDIAYYFNDAKEHGIRIYSPNINSPSAYFEV 807

Query: 831  GDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             ++ I YSLAAIK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +G
Sbjct: 808  KNDGITYSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSG 867

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFSVE 946
            ALD    +R +   S+D +  Y+    K    +  N+F     T  DK  L   E F+++
Sbjct: 868  ALDEIKGNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKTI-DKFNLAISEDFTLD 926

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE------SVATIRGNNIRLAAM 1000
                +   E+  LGFY S HPLD YK IL    IK   E       V    G  I L  +
Sbjct: 927  E---KLNKEKEFLGFYLSSHPLDKYKDILTTFFIKKLSEFDLEGNQVIKTFGTIINLKKI 983

Query: 1001 VVSKQQK 1007
            +  K+++
Sbjct: 984  ITKKEEQ 990


>gi|33861502|ref|NP_893063.1| DNA polymerase III subunit alpha [Prochlorococcus marinus subsp.
            pastoris str. CCMP1986]
 gi|33634079|emb|CAE19404.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus subsp.
            pastoris str. CCMP1986]
          Length = 1165

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1052 (37%), Positives = 619/1052 (58%), Gaps = 46/1052 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L  HS YSLL+GA  ++ I+D+       +IA+TD   ++  L+  +K  + GI+PI
Sbjct: 3    FVPLHNHSDYSLLDGASQVSKIVDRACELGMDSIALTDHGVMYGVLDLVKKCKSKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IG ++ I       +      P P       +V+L     GY+ L++L +  +L     +
Sbjct: 63   IGNEMYI-------INGSIDDPQPKKEKRYHLVVLAKNHTGYKNLVKLTTISHLNGMRGR 115

Query: 128  SV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +  R C+   L E   +GLI+ T    G I +A       VAE   + +K++FGD  Y+
Sbjct: 116  GIFSRPCIDKSLLEKYNDGLIISTACLGGEIPQAILKGRIDVAENTAVWYKRIFGDDFYL 175

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +Q H    DR    +++++   H++ ++ATN++ ++S  D EAHD L+ V    ++S +
Sbjct: 176  EIQDHGSIEDRIVNVELIRIGKEHQIKVIATNDAHYISNMDVEAHDALLCVLTGKLISDE 235

Query: 244  DRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIE 297
             R R T   Y+K+  EM+ +F+D      + EA+ NTVE++++           +P+F  
Sbjct: 236  KRLRYTGTEYIKSEDEMLRLFNDHIDKESIKEAINNTVEVSQKIEEFELFGTYRMPKFPL 295

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            KE    + +  + L      GL  RL +  + +    + Y++RL  EL +I  M F  YF
Sbjct: 296  KE----ETDSLSFLTKITKQGLLSRLNKNNLDE--IDEIYKKRLTSELKIIDDMGFPDYF 349

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+V D+I++A+ ++IPVGPGRGS AGS+ AYAL IT+IDP++  LLFERFLNP R SMPD
Sbjct: 350  LVVWDYIKFARDSSIPVGPGRGSAAGSLVAYALQITNIDPVKHGLLFERFLNPARKSMPD 409

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D DFC DRR+EVI YV N+YG ++VAQIITF  + +KA L+DV R L +PY + D+L K
Sbjct: 410  IDTDFCIDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGESDKLAK 469

Query: 478  LIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            LIP     P  L  + D       FR+  L D  V + ++++ ++EG  +    HAAG+V
Sbjct: 470  LIPVVRGKPYKLNEMIDKKSPSPEFRDKYLKDIKVKKWIDLALRIEGTNKTYGVHAAGVV 529

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQR 592
            I   PL  LVP+ R+    + +TQ++M  IE  GL+K DFLGLK LT++ K++  + +  
Sbjct: 530  IASDPLDMLVPLQRNNEGQI-ITQYSMDDIESLGLLKMDFLGLKNLTMIDKTISLIESST 588

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G K+++  +P  D++T+ L+      G+FQLESSGM+Q ++  +P+ +EDI ++++LYRP
Sbjct: 589  GQKINIDKLPPKDNKTFDLIGRGDLEGVFQLESSGMKQVVKDFKPNSLEDISSILALYRP 648

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+D  ++  + NRKNG EKI   HP I+ +L ET G+++YQEQ+M+IAQ L+GYSL +A
Sbjct: 649  GPLDAGLIPKFINRKNGSEKIDFPHPFIESILTETYGIMVYQEQIMKIAQDLAGYSLGDA 708

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK   EM K +  FI G+ K G+ K IA ++F+ +  FA+Y FNKSH+ AY 
Sbjct: 709  DLLRRAMGKKKVSEMVKHRNIFIEGSCKKGVDKKIANDLFDQMVLFAEYCFNKSHSTAYG 768

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++YQTA++K HYPV ++A+ +++   + +K++++  +     I+++ PS+N   +DF +
Sbjct: 769  AVTYQTAFLKAHYPVAYMASLLSVNAGSSDKMQRYISNCYSMGIEVISPSINLSGIDFTI 828

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              ++I + L+AIK +G +  R+I++       F S  D C R+ S  LN+R LESL+  G
Sbjct: 829  KKDQILFGLSAIKNLGDSAIRNIIDNRNKLGVFKSFSDLCDRLPSNILNKRNLESLIHCG 888

Query: 890  ALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VE 946
            ALD F    +R QL   L+ + ++A    ++R +   N+F       + + +L + S VE
Sbjct: 889  ALDEFSENNNRAQLFSDLEYVMEWASSRNRDRISGQGNLFDSISKNDTKEFSLSQGSKVE 948

Query: 947  NSSV--RFENEQRVLGFYFSGHPLD-VYKP--ILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            + S+  + + E+++LGFY S HPL  + KP  ++  + I   E S    +   + L  M+
Sbjct: 949  DYSLIEKLKLEKQLLGFYLSDHPLKHLAKPAKLVSPISISQLENSHDRTK---VSLVGMI 1005

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +Q  TRKG R+  V   + +   EA  FP
Sbjct: 1006 PELKQITTRKGDRMAIVQLEDLSGSCEAIVFP 1037


>gi|113955565|ref|YP_730835.1| DNA polymerase III subunit alpha [Synechococcus sp. CC9311]
 gi|113882916|gb|ABI47874.1| DNA polymerase III, alpha subunit [Synechococcus sp. CC9311]
          Length = 1174

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/1068 (38%), Positives = 611/1068 (57%), Gaps = 68/1068 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +    AGI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPQMVGRAKELGMPALALTDHGVMYGAVELLKLCKGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVP---SIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IIG ++ +       +      P P       +V+L   A GY+ L++L S  +L     
Sbjct: 62   IIGNEMYV-------INGSIDDPQPKKERRYHLVVLAKNATGYRNLVKLTSISHLRGMRG 114

Query: 127  QSV--RICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            + +  R C+    L++ G EGLI+ T    G I +A   +   VA    L +++ FGD  
Sbjct: 115  RGIFSRACVDKQLLKQYG-EGLIVATACLGGEIPQAIMRDRPDVARDVALWYQQTFGDDF 173

Query: 183  YVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +Q H    DR    ++V++A    +PL+ATN++ +L+  D EAHD L+ V    ++S
Sbjct: 174  YLEIQDHGSPEDRIVNVEIVRIAKELGIPLIATNDAHYLTRNDVEAHDALLCVLTGKLIS 233

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRF 295
               R R T   YLK+  EM  +F D      + EA+ NTV++A +      +    +PRF
Sbjct: 234  DVKRLRYTGTEYLKSEEEMSRLFVDHLEPDVVAEAISNTVQVADKVEDYDILGRYQMPRF 293

Query: 296  IEKE----CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
               E       +++  E  LRN+    LE+  ++ AI       +Y  RL  EL ++ +M
Sbjct: 294  PIPEPHTPVSYLREVTEQGLRNR----LEID-SETAIDP-----NYGDRLSHELKIMEQM 343

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFL+V D+I++A++  IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+
Sbjct: 344  GFPTYFLVVWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPE 403

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R SMPD D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY  
Sbjct: 404  RKSMPDIDTDFCIERRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGD 463

Query: 472  VDRLCKLIPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
             DRL KLIP     P  L A+    + +  FRE    DP V R ++++ ++EG  +    
Sbjct: 464  ADRLAKLIPVVRGKPAKLAAMIGEESPNPEFREKYKKDPVVKRWVDMAMRIEGTNKTYGV 523

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HAAG+VI   PL +LVP+ R+    + +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+
Sbjct: 524  HAAGVVIAADPLDELVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLE 582

Query: 588  FLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             +A   G KVD   +P +D ETY LL      GIFQLES+GMRQ +  ++P  +EDI ++
Sbjct: 583  LVAATIGEKVDPDKLPLEDPETYALLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSI 642

Query: 647  VSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ++LYRPGP+D  ++  + NRK+G+E I   H  I+P+L+ET G+++YQEQ+M+IAQ ++G
Sbjct: 643  LALYRPGPLDAGLIPKFINRKHGRETIDFAHHSIEPILQETYGIMVYQEQIMKIAQDMAG 702

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YSL EAD+LRRAMGKK   EM K +  F+ GAS  G+ K +A  +F+ +  FA+Y FNKS
Sbjct: 703  YSLGEADLLRRAMGKKKVSEMQKHRGIFVQGASDRGVDKKVADELFDQMVLFAEYCFNKS 762

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+ AY  ++YQTA++K HYPV ++AA +T+     +K++++  +     I++MPP +N  
Sbjct: 763  HSTAYGAVTYQTAYLKAHYPVAYMAALLTVNAGASDKVQRYISNCNAMGIEVMPPDINAS 822

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLE 883
             +DF    +RI + L+A++ +G    R ++ +  ++  F SL D C R+ S  LNRR +E
Sbjct: 823  GIDFTPKGDRILFGLSAVRNLGDGAIRAVIGSRESEGAFQSLADLCDRLPSAVLNRRSME 882

Query: 884  SLVFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----------AHEK 931
            SL+  GA+D      +R QL+  LD +  +A    K+R +   N+F          A + 
Sbjct: 883  SLIHCGAMDALEPEANRAQLMADLDLLLDWATSRAKDRASGQGNLFDLMAAASSDGAEDA 942

Query: 932  GT---FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP---ILRKMGIKGYEE 985
            GT    + K    K       +R E +  ++GFY S HPL    P   +L  +G+   EE
Sbjct: 943  GTDLSLAPKAPPVKDYHPTEKLRLEKD--LVGFYLSDHPLKQLTPPAKLLAPIGLGSLEE 1000

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 + + I   AMV   +Q  TRKG R+  +T  +     EA  FP
Sbjct: 1001 QADKAKVSAI---AMVSEMRQVTTRKGDRMAVLTLEDLTGSCEAVVFP 1045


>gi|71065735|ref|YP_264462.1| DNA polymerase III, alpha subunit [Psychrobacter arcticus 273-4]
 gi|71038720|gb|AAZ19028.1| DNA polymerase III, alpha subunit [Psychrobacter arcticus 273-4]
          Length = 1247

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/1013 (38%), Positives = 600/1013 (59%), Gaps = 72/1013 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +FVHL +HS YS+ +  + +  ++   AAD Q A+A+TD +NL++ ++F +    AGI+P
Sbjct: 2   AFVHLGIHSEYSITDSIVRIKPLVKAAAADNQRALALTDLSNLYATVKFYRACLGAGIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS------RMYLLD 123
           IIG ++ ++ +D                 + LL    EGYQ +  +VS      R   ++
Sbjct: 62  IIGSEVIMENEDT---------------RLTLLAMDNEGYQNITRIVSLGFTEGRADPVN 106

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            G   ++   S + E G   +++ T  S   + +A   +  + A++ +  ++  F DRLY
Sbjct: 107 HGTPVIK--RSHILEHGAGVIVLFTEKSD--VGQALVGSMPEKADELITEWQASFDDRLY 162

Query: 184 VNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
             ++R    G D + ++ +   A  H +P++A N+  FL ++D++AH+  + +A S V++
Sbjct: 163 FAIKRTNRTGEDAFIKAAIHSGA-KHHIPIIAHNDVRFLEQDDFDAHEARVCIAGSYVLA 221

Query: 242 QKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            ++RP+   D  YLK +++M  +F+D+P+ ++NT+ +A RC+  L +   +LP F   E 
Sbjct: 222 DQNRPQTYSDAQYLKTQAQMQQLFADIPQVIDNTLRLATRCNVTLTLGINVLPEFPVPEG 281

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQ--GAIAKGYHAQDYRQR----LDFELNVIARMKFS 354
           +      E+  R ++  GLE RL +     A+  H  D RQR    L++EL VI  M F 
Sbjct: 282 E----TTESFFRLESQRGLENRLDKLFPVDARSDHWSDIRQRYDERLEYELKVILSMGFP 337

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
           GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLNP+R+S
Sbjct: 338 GYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYALNITDLDPIHYDLLFERFLNPERVS 397

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           MPDFDIDFC + RD VI YV   YG E V+QIITFG++ AKA +RDV RA    Y    +
Sbjct: 398 MPDFDIDFCIEGRDRVIDYVAQTYGREAVSQIITFGTMAAKAVVRDVARAQSKSYFLASK 457

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD-----RLLEISQKLEGLYRHASTHA 529
           + KLIP  P   +S QA+  + + ++      ++D      + E++ KLEG+ R+   HA
Sbjct: 458 MSKLIPKTPGITLS-QALEQEPQLKDLISNPDNMDYEDAIEVWEMAIKLEGICRNVGKHA 516

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G++I    ++    +Y D      V+QF+   +E  GL+KFDFLGL+ LT++  +++ +
Sbjct: 517 GGVLIAPHKITDFSAIYCDDEGHR-VSQFDKDDVEAVGLVKFDFLGLRNLTVISAAVENI 575

Query: 590 AQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            +R  K     + L  +P DD + Y LL    T  +FQLES GM++ L  +QP  IED+I
Sbjct: 576 NKRRAKEGKEALVLEDLPLDDAKAYKLLQDAKTTAVFQLESMGMKKYLAKLQPTNIEDVI 635

Query: 645 ALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
           A+ +LYRPGP+D  +V  Y +RK+G+E+++  HP ++P+L+ T GVI+YQEQVMQI+Q++
Sbjct: 636 AMCALYRPGPLDAGMVEMYIDRKHGREEVIYDHPNLEPILENTNGVIVYQEQVMQISQVM 695

Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
           +GYSL  AD+LRRAMGKK  EEM KQ++ F++GA+  GI +  +  +F+L+ KFA YGFN
Sbjct: 696 AGYSLGGADMLRRAMGKKKPEEMAKQRDIFVTGATAQGIDEATSGGVFDLMEKFAGYGFN 755

Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821
           +SH+AAY V++YQTA++K +YP EF+AA +T +M+N + +  F  D R+ F + ++ PSV
Sbjct: 756 RSHSAAYGVLAYQTAYLKQYYPAEFMAAVLTSDMNNTDNVVFFINDCRENFALTVVNPSV 815

Query: 822 NTPCVDFKVGD--NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLN 878
           N     F V D    I Y L AIKGVG      I+EA   + PF  L DFC RVD KK+N
Sbjct: 816 NRSEWHF-VADTPTNIIYGLGAIKGVGEGAVESIVEARRREGPFKDLYDFCRRVDIKKVN 874

Query: 879 RRVLESLVFAGALDCFGYS-------------RMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
           +R LE L+ AG  D F  +             R  L+  L +  + A+   +NR     +
Sbjct: 875 KRTLEGLINAGCFDDFAATLRPDLPSDEAYEIRGALMSQLPSAVQAAEQDRQNREIGMMD 934

Query: 926 IFAHEKGTF-SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
           +F    G   +  + +    +     R + E+  LG Y +GHP+D Y+  L++
Sbjct: 935 LFGEMDGVVAAPPLVMTPELIWGDKHRLKAEKNTLGLYLTGHPIDEYRDELKR 987


>gi|304316261|ref|YP_003851406.1| DNA polymerase III subunit alpha [Thermoanaerobacterium
            thermosaccharolyticum DSM 571]
 gi|302777763|gb|ADL68322.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
            thermosaccharolyticum DSM 571]
          Length = 1144

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/1060 (37%), Positives = 615/1060 (58%), Gaps = 67/1060 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G+  +  ++ +       +IAITD   ++ A+EF ++A + GI+PI
Sbjct: 2    FVHLHVHSEYSLLDGSCRIKELVKRAKELDMDSIAITDHGVMYGAIEFYKEAKSQGIKPI 61

Query: 71   IGCQLDIDMQ---------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            IGC++ +  +         DNL               ++LL     GY+ L+++VS+  +
Sbjct: 62   IGCEIYVAPRSLYDKEYGIDNLNY------------HLILLCKNMTGYENLMKIVSKASI 109

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD- 180
             D      R+   +L+   +EGLI L+    G I      +  + A+   + +  +FG  
Sbjct: 110  -DGFYYKPRVDHEYLKN-HSEGLIALSSCLGGEIPSYLLSDDYEKAKDTAILYNSIFGKG 167

Query: 181  RLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQ H   ++ +  S++++L+   ++P+VATN+  +L  +D+ AH+VL+ +     
Sbjct: 168  NFYLELQYHGLSEQEKVNSELIKLSKELDIPIVATNDVHYLDRDDHMAHEVLLCIQTGKN 227

Query: 240  VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +   DR    T + YLK+  EM  +FS   EALENT +IA  C+   + +   LP++   
Sbjct: 228  MDDADRMSFPTDEFYLKSSDEMYEMFSYCREALENTEKIAEMCNLEFEFNKTKLPKY--- 284

Query: 299  ECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
               D+         LR   + G+  R A  +       ++  +RL++EL+VI +M +  Y
Sbjct: 285  ---DVPNGMTSAEYLRKLCIEGVNKRYANPS-------KEVIERLNYELSVIEKMGYVDY 334

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV DFI++A+ N I  GPGRGS AGS+ AY L IT IDP++++LLFERFLNP+R+SMP
Sbjct: 335  FLIVWDFIKFARDNGIMTGPGRGSAAGSLVAYCLGITKIDPIKYNLLFERFLNPERVSMP 394

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D DFC +RR EVI YV  KYG ++VAQIITFG++ A+AA+RDVGRAL  PY++VD + 
Sbjct: 395  DIDSDFCYERRQEVIDYVVKKYGEDKVAQIITFGTMAARAAIRDVGRALNFPYAEVDAIA 454

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            K+IP +P   +  +AI  +   +E    D  + +L+EIS+ LEGL RHASTHAAG+VI  
Sbjct: 455  KMIPFEPGMTID-KAIGLNPELKEKYENDEKIRQLIEISRSLEGLPRHASTHAAGVVISS 513

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595
             PL + VP+ ++  S   VTQF M  +E+ GL+K DFLGL+TLT+++ +L+ + + R + 
Sbjct: 514  EPLVKYVPLQKNEGS--IVTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLNIIKETRSID 571

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD+  I F+D E Y L++   T G+FQLESSGM+Q +  ++P+ +EDIIA +SLYRPGP+
Sbjct: 572  VDIDNIDFEDKEVYALISKGDTEGVFQLESSGMKQFMTELKPEKLEDIIAGISLYRPGPM 631

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  Y   KN  E I   HPL+ P+L  T G ++YQEQVMQI + L+GYSL  +D++RR
Sbjct: 632  DQIPRYIENKNHPENIKYEHPLLKPILDVTYGCMVYQEQVMQIVRDLAGYSLGRSDLVRR 691

Query: 716  AMGKKIKEEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNK 763
            AM KK  + M+++++ FI             GA   G+ +  A  +F+ +  FA+Y FNK
Sbjct: 692  AMAKKKMKVMEEERKNFIYGIKDESGNYVVPGAINKGVDEATANRLFDEMIDFANYAFNK 751

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAAAYAV+++QTA++K +YPVEF+AA +   +DN +K+  + Q  ++  IQ++PP +N 
Sbjct: 752  SHAAAYAVVAFQTAYLKRYYPVEFMAALLNSFVDNTDKVAFYVQVLKKMGIQVLPPDINE 811

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVL 882
                F V + +I + LAA+K VG      I+E    +  + S+ DF  R+D  +LN++ +
Sbjct: 812  SYSHFSVVNGKIRFGLAAVKNVGLNATLEIVEDRKKNGRYISIVDFFERIDDMQLNKKAV 871

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            ESL+ AGA D FG  R QLL   ++I        +       ++F  E        +L  
Sbjct: 872  ESLIKAGAFDSFGVYRSQLLAVYEDIMDSIHKNRERNIKGQMSLFGSEIERNEVNYSLPD 931

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG------IKGYEESV---ATIRGN 993
                +  +    E+  +G Y SGHPLD ++  ++++       +K  +++    +     
Sbjct: 932  IKEFSQDMILSMEKETMGLYISGHPLDEFQEDIQRVANCTTRDLKNGDDTFVKKSIFDNQ 991

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++ LA ++ SK+ K T+  + + +V   +     +   FP
Sbjct: 992  DVVLAGIIESKKIKFTKNNNMMAFVNLEDLYGTIDVIVFP 1031


>gi|325267457|ref|ZP_08134113.1| DNA-directed DNA polymerase III alpha subunit [Kingella denitrificans
            ATCC 33394]
 gi|324981098|gb|EGC16754.1| DNA-directed DNA polymerase III alpha subunit [Kingella denitrificans
            ATCC 33394]
          Length = 1153

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/1037 (39%), Positives = 586/1037 (56%), Gaps = 51/1037 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            ++ L+ HS +S+ +G + +  +    A    PA+A+TD  N F  L+F +    AG++PI
Sbjct: 15   YIPLRAHSEFSITDGIIRVGELAKTAAEYGYPAVALTDLMNTFGLLKFYKACRKAGVKPI 74

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ I          Q   PF      +LL+    GY RL EL++  +  D+ +  + 
Sbjct: 75   LGAEVRI------ANPKQPAQPF----RALLLIRNHSGYVRLGELLTLAHT-DEYRDLIA 123

Query: 131  ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              L   WL E    GLI L+G   G I +A      + A +    +   F    Y+ +QR
Sbjct: 124  PQLQEEWLAEGDNSGLICLSGAQWGEIGQALLAGHEEQALQAAQKYAAWFEQAFYLEVQR 183

Query: 189  HRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  +    +  V+LA   +LP+VAT+ + FL  ED+ AHD  + +A   V++   RP
Sbjct: 184  LPDKPEWETVVAGSVRLAEQLDLPVVATHATQFLQREDFTAHDARVCIAGGWVLADDKRP 243

Query: 247  RVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                D  Y  +  EM   F+DLP AL N++EIA+RC+  L++    LP F   E   +  
Sbjct: 244  HDFSDSQYFAHPEEMAERFADLPAALANSLEIAKRCNVELELGKNFLPDFPTPEGMPLN- 302

Query: 306  EEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               + L   A  GL  R   L      +     +Y+ RLDFEL  I +M F GYFLIV D
Sbjct: 303  ---DYLCVLANQGLRERMEVLYPDEAERNAKMPEYQARLDFELQTIIQMGFPGYFLIVQD 359

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK+N  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDF
Sbjct: 360  FINWAKQNGCPVGPGRGSGAGSLVAYALKITDLDPLKYALLFERFLNPERVSMPDFDIDF 419

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  R  VI YV+ KYG E V+QI+TFG+L +KA +RDVGR LQ+P+   DRL KL+P +
Sbjct: 420  CQANRGRVIEYVREKYGKEAVSQIVTFGTLSSKAVIRDVGRVLQLPFGLCDRLSKLVPVE 479

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               P+ LQA  +        +     + LL ++ KLE L R+   HA G++I    ++  
Sbjct: 480  ANKPLGLQAALEAEPEIRTLIEAEEAEELLTLALKLEDLTRNLGMHAGGVLIAPGRIADF 539

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
              +Y+      PV+ ++   +E+ GL+KFDFLGL+ LT+++ +  F+ Q RG  +D++ I
Sbjct: 540  CGVYQADEHSSPVSMYDKGDVEEIGLVKFDFLGLRNLTIIEMAQQFIRQTRGEDIDVNRI 599

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
              DD   Y +     T  +FQ ESSGM+Q L+       E++IA VSLYRPGP++NI  +
Sbjct: 600  ALDDQAAYQIFRDANTTAVFQFESSGMKQMLKTAHTTKFEELIAFVSLYRPGPMENIPDF 659

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R  G  K   +HPL++P+L+ T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGKK 
Sbjct: 660  VARMKGA-KFEYMHPLLEPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAMGKKK 718

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             EEM K +E F  GA+K  I +  A  IF+ + KFA YGFNKSHAAAYA +SYQTAW+K 
Sbjct: 719  PEEMVKHREIFAEGAAKQNIDRAKADEIFDYMEKFAGYGFNKSHAAAYAYVSYQTAWLKA 778

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFN-IQIMPPSVNTPCVDF-KVGDNRIYYS 838
            HYP EF+AA+M+ E+DN +++K F  DA R  N I+ +PP +N     F    +N I Y+
Sbjct: 779  HYPAEFMAATMSSELDNTDQLKVFFDDAQRPVNGIRFLPPDINQSFYRFIPNANNEIRYA 838

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I+ E  A+  F  L DFC R+  K +NRR +E+L+  GA D    +
Sbjct: 839  LGAIKGTGEAVVNQIVAEREANGAFTGLLDFCERM-GKHINRRSVEALIRGGAFDALEPN 897

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFSVENSSVR 951
            R  LL ++D          +N   KH++  A++ G F       D I ++     + +V+
Sbjct: 898  RAMLLANVD-------LALQNAEQKHQS--ANQGGLFDMFDDVIDDIQMQPAPAWSEAVQ 948

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKT 1009
               E+  +GFY SGHP   Y+  +R++       S+A +  +    R+A    S +   T
Sbjct: 949  LAEEKTAIGFYLSGHPFSPYREEVRRVA----PVSLAKLSEQDGTQRVAGFATSIRSIMT 1004

Query: 1010 RKGSRIGWVTFSEPAKE 1026
            ++G  +  +   + AK+
Sbjct: 1005 KRGKMLAIMLEDDEAKQ 1021


>gi|288575454|ref|ZP_06393727.1| DNA polymerase III, alpha subunit [Neisseria mucosa ATCC 25996]
 gi|288567673|gb|EFC89233.1| DNA polymerase III, alpha subunit [Neisseria mucosa ATCC 25996]
          Length = 1124

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/1013 (39%), Positives = 580/1013 (57%), Gaps = 64/1013 (6%)

Query: 42   PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
            PA+ I+D  N F  ++F +   +AGI+P+    + I         N    PF      +L
Sbjct: 17   PALGISDLMNEFGLVKFYKACRSAGIKPVGAADVWIGN------PNAPDKPF----RAML 66

Query: 102  LVSTAEGYQRLIELVSRMYL-LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            ++    GY RL EL++  Y+  D+      +   WL+     GLI L+G   G +     
Sbjct: 67   VIRNDAGYLRLSELLTTAYVGKDRNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLL 126

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSL 218
              +   A    L +   F D  Y+ LQR      +    S  V+LA    LP+VAT+ + 
Sbjct: 127  NGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQ 186

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            F+S +D+ AH+  + +A   V++ K RPR  TP  +      M+  F+DLPEALENTVEI
Sbjct: 187  FMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQFFIPPETMLERFADLPEALENTVEI 246

Query: 278  ARRCSFILQVHAPILPRFIEKE---CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
            A+RC+  + +    LP F   +    DD   +  NE       GL+ R+ Q    +   A
Sbjct: 247  AKRCNIHITLGKNFLPLFPTPDGLSLDDYLVKLSNE-------GLQERMVQLYPDEAERA 299

Query: 335  Q---DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
            +   +Y++RLDFELN+I +MKF GYFLIV DFI WAK +  PVGPGRGSGAGS+ AY+L 
Sbjct: 300  EKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLK 359

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            ITD+DPL+++LLFERFLNP+R+SMPDFD+DFCQ  R  VI YV+ KYG E V+QI+TFG+
Sbjct: 360  ITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGT 419

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDR 510
            + +KA +RDVGR L++P++  D+L KLIP +   P+ L  A+  + + +E   A+   D 
Sbjct: 420  MSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLGLDDAMKAEPQIQELIEAE-EADE 478

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            L+ +++KLE L R    HA G++I    +S   P+Y+   S  PV+ ++   +E  GL+K
Sbjct: 479  LITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESASPVSMYDKGDVEDVGLVK 538

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVK------VDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            FDFLGL+ LT+++     +AQ  +K      VD+  IP DD   Y +     T  +FQ E
Sbjct: 539  FDFLGLRNLTIIE-----MAQNNIKNTTGDIVDVGTIPLDDQLAYKIFRDANTTAVFQFE 593

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S+GM++ L+       E++IA VSLYRPGP+DNI  +  R  G+E    IHPL++ +L  
Sbjct: 594  STGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQE-FQYIHPLLEGILAP 652

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGKK  EEM K +E F  GA+K GIS+ 
Sbjct: 653  TYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIFAEGAAKQGISRE 712

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
             +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+K HYP EF+AA+M+ E+DN +++K 
Sbjct: 713  KSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAATMSSELDNTDQLKH 772

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPF 862
            F  D R   I+ +PP +N     F    N +I Y+L AIKG G      I+ A  +   F
Sbjct: 773  FYDDCRANGIEFLPPDINESDYRFTPYPNMKIRYALGAIKGTGEAAVESIIAARQSGGKF 832

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
              L DFC RV  + +NRR LE+L+  GA D    +R  LL ++D           N   K
Sbjct: 833  TGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLANID-------LAMNNADQK 885

Query: 923  HENIFAHEKGTFS------DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
              N  A++ G F       + + L    + + S +   E+ V+GFY SGHP   Y   +R
Sbjct: 886  AAN--ANQGGLFDMMEDAIEPVQLVDAPMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVR 943

Query: 977  KMGIKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            ++        +  ++  +++RLA  V + +    ++G +I +V+  + + + E
Sbjct: 944  QIA----PTKLGRLKPQDSVRLAGFVTAVRTMMGKRG-KIAFVSLEDLSGQIE 991


>gi|157165237|ref|YP_001467325.1| DNA polymerase III subunit alpha [Campylobacter concisus 13826]
 gi|112801857|gb|EAT99201.1| DNA polymerase III subunit alpha [Campylobacter concisus 13826]
          Length = 1203

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/1059 (37%), Positives = 620/1059 (58%), Gaps = 63/1059 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++  F HL +H+ YSLL+GA  +  +   +      A AITD  N+F A++F +K   
Sbjct: 1    MSENSGFTHLHLHTEYSLLDGANKIEELAHTLHDRGDTAAAITDHGNMFGAIDFYKKMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+P+IG +  +   + L      K  F     ++L+     GY+ L+ L S  Y+ + 
Sbjct: 61   NGIKPLIGIEAYVHNGEQLD-DKSTKQRF----HLILIAKNETGYKNLMYLSSMSYI-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPI-------DRAFFFNSS--QVAEKRLLTFK 175
                 RI    L+E  +EGL+  +    G +       +R   F +   + A++  L +K
Sbjct: 115  FYYYPRINKKILKE-HSEGLVCSSACLQGEVSWHLNLSERNVKFGAKGYERAKEVALEYK 173

Query: 176  KLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            ++FGD  Y+ + RH   D+ R +  ++++A    + ++ATN++ +  +E   AH+V M +
Sbjct: 174  EIFGDDFYLEIMRHGIGDQRRIDDDILRIAKETGIKVIATNDTHYTFKERAAAHEVFMCI 233

Query: 235  AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            A +  +   +R R +  + ++K++ +M  +F D+PE +ENT EI  +C+  +++  P  P
Sbjct: 234  AMNKTLDDPNRLRHSVHEFFVKSKEQMNELFLDIPEVIENTQEIVDKCNLEIKLGNPTPP 293

Query: 294  RF-----IEKECDDIQKEEEN--ELRNKAV-------AGLEVRLAQGAIAKGYHAQDYRQ 339
             F       KE +    E EN    +N AV        GLE RL    + +  H ++YR+
Sbjct: 294  NFKFTLECAKERNLTLPEPENRYSFKNDAVFFEHECRKGLEERLK--FVPENLH-EEYRK 350

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL+ E+++I +M F GY +IV DFI  AK+  +PVGPGRGS AGS+ AY+L ITD+DP+ 
Sbjct: 351  RLEIEISIINKMNFPGYMMIVWDFINEAKRRGVPVGPGRGSAAGSLVAYSLKITDLDPIP 410

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            ++LLFERFLNP+R+SMPD D+DFCQ RR E+I YV  KYG   VA +ITFG L AK  +R
Sbjct: 411  YNLLFERFLNPERVSMPDIDVDFCQSRRGEIIDYVTQKYGKFNVAGVITFGKLLAKGVIR 470

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD-----PSVDRLLEI 514
            DV R   MPY++ D + KLIP++      L     D+  +E ++A+     P   ++ + 
Sbjct: 471  DVARVCDMPYAEADAMAKLIPDE------LNITLKDAYDKEPKIAELISQNPKAAKIWKF 524

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS--DLPVTQFNMKWIEKAGLIKFD 572
            +  LEGL R+A  HAAG+VI +  L    P++R   S  D  VTQ+++K++E   LIKFD
Sbjct: 525  ALDLEGLNRNAGQHAAGVVISNEELWNKTPLFRQPNSPEDRFVTQYSLKYLEDVDLIKFD 584

Query: 573  FLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  ++  + QR G ++    +  +D   Y ++ +   +GIFQ+E  GMR+ 
Sbjct: 585  FLGLKTLTVIDNAIKLVKQRTGREIVWEQVDKNDSGVYKMIQSGQAIGIFQIEGEGMRKL 644

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
               ++PDC EDI+A+++LYRPGP+++ ++  +  RK+G+ +I      ++P+L  T GVI
Sbjct: 645  GTSLRPDCFEDIVAMLALYRPGPMESGMLDDFVKRKHGEAEITYAFKELEPILAPTYGVI 704

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL  AD++RRAMGKKIKEEMD+ K  F+ GA   G++   A ++
Sbjct: 705  VYQEQVMQIVQAIGGFSLGGADLVRRAMGKKIKEEMDRLKGEFVKGAEAKGLNGQKADDL 764

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            FEL+ KFA YGFNKSH+AAYA +++QTA++K +YP EF+AA +T E  NV+KI ++  + 
Sbjct: 765  FELIVKFAGYGFNKSHSAAYAYVTFQTAYLKAYYPAEFMAALLTSEESNVDKIVRYIDEI 824

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDN----RIYYSLAAIKGVGTTTARHIM-EASADKPFDS 864
            ++ NI  +PPS+N    +F V  N     I + L AIKGVG     +I+ E  A   F S
Sbjct: 825  KRINIDTLPPSINKSTKEFSVVKNGEHDGIIFGLGAIKGVGGAAIENIIAERDAKGEFKS 884

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            ++DF SR+D  K+N++V ESL+ AG  D FG+SR  LLQ+++NI +  +   + R N  E
Sbjct: 885  MDDFVSRIDPFKVNKKVFESLIKAGCFDEFGFSRKMLLQNVENIVEACKNAAQIRKNAAE 944

Query: 925  NIFAHEKGTFSDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
            ++F  +      KI      ++F ++   ++FE E   +G Y SGHPLD YK  + K+  
Sbjct: 945  SLFGEDDSMNDVKINFVTINDEFDIK-QILKFEQES--VGIYLSGHPLDDYKDEINKIKY 1001

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
                E  +  +   I +   +     + T+ G ++G + 
Sbjct: 1002 TLSSEFESLPQSAEILVVGKIEDFSTRITKSGKKMGTIN 1040


>gi|294786036|ref|ZP_06751323.1| DNA polymerase III, alpha subunit [Fusobacterium sp. 3_1_27]
 gi|294486373|gb|EFG33736.1| DNA polymerase III, alpha subunit [Fusobacterium sp. 3_1_27]
          Length = 1133

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/1029 (38%), Positives = 607/1029 (58%), Gaps = 73/1029 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSL EG  S++N L K       ++A+TD  N+F A+EF QKA   GI+P
Sbjct: 4    NFVHLNLHTEYSLSEGVNSIDNFLIKAKELGMTSLAVTDYANMFCAVEFYQKAKKMGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L I  +D              + S+ LL     GY+ L++L S +Y  ++ ++ +
Sbjct: 64   IIGLELPISNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRE-L 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-----QVAEKRLLTFKKLFGDRLYV 184
            ++    L+E  ++ LI L+   +G I +A   NSS     ++ ++ +  F K   +  Y+
Sbjct: 112  KLNKEILKE-HSQDLIALSSSMNGEIGKAILTNSSDEKISKIIDEYIEIFSK---ENFYL 167

Query: 185  NLQRHRGYDRYRESQVVQ-----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             +Q     +   E++++      LA  H L LVATNN  ++  + YE  D+++ +     
Sbjct: 168  EIQA----NELPETKIINDRFYDLAKLHNLELVATNNVYYVDRDGYELQDIIICIQSGLK 223

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIE 297
            V +K+R R ++ + YLK++ EM     +   +A+ENT  IA  C+  +       P +  
Sbjct: 224  VKEKNRKRAISKELYLKSKDEMKRFLGEKFEKAIENTNHIADLCNVEISFGNLQFPYY-- 281

Query: 298  KECDDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYH---AQDYRQRLDFELNVIARM 351
                ++  E          +G++  L       I K Y     +D   RL++EL+VI +M
Sbjct: 282  ----EVPSE---------YSGMDEYLKTICHTNIKKLYKEDLTKDILDRLEYELSVIIKM 328

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             +SGYF++V DFI +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+
Sbjct: 329  GYSGYFIVVWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPE 388

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   +
Sbjct: 389  RISMPDIDIDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKK 448

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            +D+L KLI   P   +  + + ++    +    D  + ++++++ ++E   RH STHAAG
Sbjct: 449  IDKLAKLIS--PFQTLE-KTLKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAG 505

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            I+I    L + VP+Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ +
Sbjct: 506  ILITKEDLDRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKK 565

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
             + + VDL  IP DD + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LY
Sbjct: 566  YKNIDVDLYKIPLDDKKVFQMLSLGDSTGVFQLESTGIRKIMKRLKPDKFEDIVALLALY 625

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+ + +V  + NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL 
Sbjct: 626  RPGPLQSGMVDDFINRKNGKEKIEYPHKDLEIILKETYGVILYQEQVMKIASYMADYSLG 685

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            EAD+LRRAMGKK    M + +E+FI  A KNG +   +  IFEL+ KFA YGFNKSH+ A
Sbjct: 686  EADLLRRAMGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVA 745

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+ISY TA+ K HYP  + AA MT E+     I  +  DA++  I++  P++N+P   F
Sbjct: 746  YAMISYWTAYFKVHYPAFYYAAVMTSEISETGDIAYYFNDAKEHGIRVYSPNINSPSAYF 805

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            +V +  I YSLAAIK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ 
Sbjct: 806  EVKNEGITYSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALIL 865

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFS 944
            +GALD    +R +   S+D +  Y+    K    +  N+F     T  D+  L   E F+
Sbjct: 866  SGALDEIKGNRKEKFLSIDKVLDYSSKSSKTDEIQQMNLFGEAAKTI-DRFNLAISEDFT 924

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIRGNNIRLA 998
            ++    +   E+  LGFY S HPLD YK IL    IK        E+ V    G    L 
Sbjct: 925  LDE---KLNKEKEFLGFYLSSHPLDRYKDILITFSIKKLSEIDLEEKQVVKTFGTITNLK 981

Query: 999  AMVVSKQQK 1007
             ++  K+++
Sbjct: 982  KIITKKEEQ 990


>gi|307243299|ref|ZP_07525466.1| DNA polymerase III, alpha subunit [Peptostreptococcus stomatis DSM
            17678]
 gi|306493317|gb|EFM65303.1| DNA polymerase III, alpha subunit [Peptostreptococcus stomatis DSM
            17678]
          Length = 1200

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/1065 (36%), Positives = 618/1065 (58%), Gaps = 64/1065 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G   L+ ++ ++      + AITD  ++F  ++F +K  +AGI+PI
Sbjct: 9    FCHLHVHTEYSLLDGFSRLDKLISRVKDLGMSSCAITDHGSMFGVVDFYKKCKSAGIKPI 68

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +D   M ++  T       ++LL    +GY+ LI++VS  Y+ D      R
Sbjct: 69   IGCEVYLAPRD---MESKDSTLDKYSSHLILLAENNQGYKNLIKIVSDAYV-DGFYYKPR 124

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAF----FFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                 L++  +EG+I L+   +G I +A     F  +  +A++ +  F K   D  ++ +
Sbjct: 125  TDKDHLRKY-SEGIICLSACLNGEIPKAILARNFDKARSLAQENIDIFGK---DNFFLEV 180

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H+   D+   + +++L+   ++PLVATN++ ++  ED    DVLM +     +    R
Sbjct: 181  QDHKLAEDKEVNAGLLKLSKEMDIPLVATNDAHYVYREDARIQDVLMCIQMQKTLDDPSR 240

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             +   D  Y+K+R EM  +F+  PEA+ENT++IA RCS      +  +P F   E     
Sbjct: 241  MKFPNDEFYIKSREEMEDLFAFSPEAVENTLKIAERCSVEFDFDSYHIPTFDVPE----G 296

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  L++    GL  R       +G   QD R RL++E++VIA M +  YFLIV DFI
Sbjct: 297  YTSLTYLQHICNQGLLERYGD---EEGNVEQDLRDRLNYEIDVIANMGYIEYFLIVWDFI 353

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             ++K+NNI VGPGRGS AGS+ AY L ITDIDP++++LLFERFLNP+R++MPD DIDFC 
Sbjct: 354  NYSKQNNIMVGPGRGSAAGSIVAYTLKITDIDPIKYNLLFERFLNPERVTMPDIDIDFCY 413

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI YV+ KYG + VAQIITFG++ AK A+RDVGR L + Y++VD + K IP    
Sbjct: 414  ERREEVIDYVKRKYGIDHVAQIITFGTMGAKLAIRDVGRVLDVAYNKVDSVAKEIPFALG 473

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A   +   R+    D  V  +++IS+++EG+ RHASTHAAG+VI  RP+ + VP
Sbjct: 474  MTID-KAFDMNPSLRKLYDGDHEVKEIIDISKEMEGMVRHASTHAAGVVISKRPVYEYVP 532

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGV--KVDL 598
            +Y++   D   TQF M  +E+ GL+K DFLGL+TLT+++ +LD +     ++G   K+D 
Sbjct: 533  LYKN--QDSITTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIEINREKKGYKGKIDF 590

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S + ++D + + L++   TLG+FQLES GMR  ++ ++P+C EDI+A +SL+RPGP+D+I
Sbjct: 591  SKMEYNDPKVFDLISQANTLGVFQLESGGMRNFMKQLKPNCFEDIVAGISLFRPGPMDSI 650

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y N KN  +++  +H  + P+L  T G ++YQEQVMQ+ + L GYSL  +D +RRAM 
Sbjct: 651  PTYINCKNNPDQVTYLHEKLRPILDVTYGCLVYQEQVMQVVRDLGGYSLGRSDSVRRAMS 710

Query: 719  KKIKEEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            KK  + M+K+++ F            I+G  +NG+ + +A  IF+ +  FA Y FNKSHA
Sbjct: 711  KKKMDVMEKERQYFIHGKLDENDNIEIAGCVRNGVPEDVANQIFDDMIDFAKYAFNKSHA 770

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAY V+SY+TA++K +YPVEF+AA MT  M N +K+ ++ ++     I ++PP +N    
Sbjct: 771  AAYGVLSYETAYLKCYYPVEFMAALMTSIMGNNDKVVEYMRECSSMGIGVLPPDINKSFS 830

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             F V  + I + LAA+K VG     +I+ E  A+ P+ +L D   R+DSK  N++ +ESL
Sbjct: 831  KFSVDGDHIRFGLAAVKNVGANAIDNIVAEREANGPYKNLTDLVKRIDSKFANKKTIESL 890

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEK 942
            +  GA D  G +R  L+ + +++       +K       ++F      F+D   +  LE 
Sbjct: 891  IKCGAFDSTGDNRASLMFAFEDVLDSISRDKKRNVEGQMSMF----DMFADMGKQGELEL 946

Query: 943  FSVEN-----SSVRFENEQRVLGFYFSGHPLDVYKPIL---------RKMGIKGYEESVA 988
              +E        +R + E+ VLG Y SGHPL  Y   L         R   +K   E + 
Sbjct: 947  GKIEGVEEFRDRIRLDMEKEVLGLYVSGHPLSEYSEKLEQRISITNARINKLKEEPEKLL 1006

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             I   +  +  M++SK+   T+    + ++   +     E   FP
Sbjct: 1007 EINEQDHIIGGMIISKKLFSTKNNEMMAFINIEDLYGSMEVVVFP 1051


>gi|237740911|ref|ZP_04571392.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
 gi|229431208|gb|EEO41420.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
          Length = 1132

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/991 (39%), Positives = 596/991 (60%), Gaps = 67/991 (6%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +FVHL +H+ YSL EG  S++N L K       ++A+TD  N+F A+EF QKA   GI+P
Sbjct: 3   NFVHLNLHTEYSLSEGVNSIDNFLIKAKELGMTSLAVTDYANMFCAVEFYQKAKKMGIKP 62

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIG +L I  +D              + S+ LL     GY+ L++L S +Y  ++ ++ +
Sbjct: 63  IIGLELPISNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRE-L 110

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-----QVAEKRLLTFKKLFGDRLYV 184
           +I    L++  ++ LI+L+   +G I +A   NSS     ++ ++ +  F K   +  Y+
Sbjct: 111 KINKEVLKKY-SQDLIVLSSSINGEIGKAILTNSSDEKISKIIDEYIEIFSK---ENFYL 166

Query: 185 NLQRHRGYDRYRESQVVQ-----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            +Q     +   E++++      LA  H L LVATNN  ++  + YE  D+++ +     
Sbjct: 167 EIQA----NELPETKIINDRFYDLAKLHNLELVATNNVYYVDRDGYELQDIIICIQSGLK 222

Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIE 297
           V +K+R R ++ + YLK++ EM     +   +A+ENT  IA  C+  +       P +  
Sbjct: 223 VKEKNRKRAISKELYLKSKDEMKRFLGEKFEKAIENTNHIADLCNIEISFGNLQFPYY-- 280

Query: 298 KECDDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYH---AQDYRQRLDFELNVIARM 351
               ++  E          +G++  L       I K Y     +D  +RL++EL+VI +M
Sbjct: 281 ----EVPSE---------YSGMDEYLKTICHTNIKKLYKEDLTKDILERLEYELSVIIKM 327

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            +SGYF++V DFI +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+
Sbjct: 328 GYSGYFIVVWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPE 387

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R+SMPD DID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   +
Sbjct: 388 RISMPDIDIDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKK 447

Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
           +D+L KLI   P   +  + + ++    +    D  + ++++++ ++E   RH STHAAG
Sbjct: 448 IDKLAKLIS--PFQTLE-KTLKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAG 504

Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
           I+I    L + VP+Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ +
Sbjct: 505 ILITKEDLDRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKK 564

Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            + + VDL  IP DD + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LY
Sbjct: 565 YKNIDVDLYKIPLDDKKVFQMLSLGDSTGVFQLESTGIRKIMKRLKPDKFEDIVALLALY 624

Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
           RPGP+ + +V  + NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL 
Sbjct: 625 RPGPLQSGMVDDFINRKNGKEKIEYPHKDLEIILKETYGVILYQEQVMKIASYMADYSLG 684

Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
           EAD+LRRAMGKK    M + +E+FI  A KNG +   +  IFEL+ KFA YGFNKSH+ A
Sbjct: 685 EADLLRRAMGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVA 744

Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
           YA+ISY TA+ K HYP  + AA MT E+     I  +  DA++  I++  P++N+P   F
Sbjct: 745 YAMISYWTAYFKVHYPAFYYAAVMTSEISETGDIAYYFNDAKEHGIRVYSPNINSPSSYF 804

Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           +V +  I YSLAAIK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ 
Sbjct: 805 EVKNEGITYSLAAIKNFGLTMAKKIIEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALIL 864

Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFS 944
           +GALD    +R +   S+D +  Y+    K    +  N+F     T  DK  L   E F+
Sbjct: 865 SGALDEIKGNRKEKFLSIDKVLDYSSKASKTDEIQQMNLFGEAAKTI-DKFNLAISEDFT 923

Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
           ++    +   E+  LGFY S HPLD YK I+
Sbjct: 924 LDE---KLNKEKEFLGFYLSSHPLDRYKDII 951


>gi|308068343|ref|YP_003869948.1| DNA polymerase III alpha subunit [Paenibacillus polymyxa E681]
 gi|305857622|gb|ADM69410.1| DNA polymerase III alpha subunit [Paenibacillus polymyxa E681]
          Length = 1225

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/1036 (38%), Positives = 608/1036 (58%), Gaps = 30/1036 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL+GA     ++ + +A    A+A+TD   ++ A+ F +     GI+P
Sbjct: 3    SFVHLHVHSEYSLLDGAARTAELVKQASAYGMKALALTDHGVMYGAIPFYRACVENGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  +      +  ++   P   +  ++LL     GYQ L++L S  +L +      
Sbjct: 63   IIGCEAYMTAGSRKERGSRKDQP---IYHLILLAKNKTGYQNLMKLCSIGHL-EGFHYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI +  L     EG+I L+    G + +         A +    ++ +FGD  Y+ LQ H
Sbjct: 119  RIDMEALAA-HHEGIICLSACLGGEVPQHLLHGREAEARRAAERYRNIFGDDFYLELQDH 177

Query: 190  RGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ R + + + LA   ++PLVATN+  +L+E D +  DVL+ +     V  ++R R+
Sbjct: 178  GLSEQKRVNPLLIALAKELDIPLVATNDVHYLTEPDADVQDVLICIGTGKTVDDEERLRI 237

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   +LK++ +M  +F  + EA+ NTV IA +C   L+    ILP +  +   +     
Sbjct: 238  PTRQLFLKSQEDMARLFPHVAEAIANTVRIAEKCELELEFGQSILPEY--RPLPE-GMTS 294

Query: 308  ENELRNKAVAGLEVRLAQGA-IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + LRN  V GLE R    +   +    +   QRL +ELN I  M FS YFLIV DFI +
Sbjct: 295  SSYLRNLCVQGLERRYGSDSRWEQPEERERLNQRLSYELNTIDSMGFSDYFLIVWDFIAF 354

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K+ I  GPGRGS AGS+ AY L IT++DP++++LLFERFLNP+R+SMPD DIDF  +R
Sbjct: 355  AHKHKIATGPGRGSSAGSLVAYVLNITNVDPMKYNLLFERFLNPERISMPDIDIDFSDER 414

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV  KYG+E VAQIITFG+L A+AA+RDVGR L +PY +VD+  KLIP      
Sbjct: 415  RDEVIDYVVQKYGNEHVAQIITFGTLAARAAVRDVGRVLNVPYGEVDKAAKLIPAQLGIN 474

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A+      +      P    LL+++ K+EG+ RHASTHAAG+VI   PL+  VP+ 
Sbjct: 475  IR-HALEITPELKTLYETKPKTRELLDMAIKVEGMPRHASTHAAGVVISRTPLTDAVPL- 532

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            ++    +P+TQ++M+ +E+ GL+K DFLGL+TL+++++ + ++A+  G   D S IP +D
Sbjct: 533  QEGSEGVPLTQYSMENLERIGLLKMDFLGLRTLSIIERCIHWIAEDHGETPDFSRIPDND 592

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              TY LL    T G+FQLES+G+R+ L+ ++P   EDII++++LYRPGP+  I  +   K
Sbjct: 593  PHTYDLLGKGDTGGVFQLESAGVRRVLKDLKPSVFEDIISVLALYRPGPMGFIPNFIQAK 652

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+ +I   HP ++P+LK+T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E +
Sbjct: 653  HGQIEISYPHPDLEPILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREVL 712

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D ++  F+ G+ K G ++  A  +++++ +FADYGF ++HAAAY V+++QTA++K HYPV
Sbjct: 713  DLERGHFVEGSIKQGYTEEEAGRVYDMIVRFADYGFPRAHAAAYGVLAFQTAYLKAHYPV 772

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKG 844
            +F+A+ +T  M +  K+ ++  + R+ +I ++PP VN   V F  +    I + LAAIK 
Sbjct: 773  QFMASMLTAVMGSHRKVAEYVVECRRMDITVLPPDVNESGVLFTPLQQGGIRFGLAAIKN 832

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VGT     I+    ++ FDSL DFC RVD +  N+RV+ESL+ AGA D     R QLL  
Sbjct: 833  VGTQAMESILAVRKERLFDSLLDFCRRVDLRVCNKRVIESLIQAGAFDSLTGHRAQLLAM 892

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-RFENEQR------ 957
            LD     A    K R +   ++F          + +  + +E  +V +F   Q+      
Sbjct: 893  LDETVDAAVKWRKERDDLQIDMFGF--------VEMPNWDIEYPNVPQFSASQQLELERE 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            +LG Y SGHPLD ++ +L         E         +  A MVVS +   T++G  + +
Sbjct: 945  LLGLYLSGHPLDDFESLLESSEADRLMELGDVPDETVVVTAGMVVSLKTITTKQGKAMAF 1004

Query: 1018 VTFSEPAKEYEANFFP 1033
            +   +  +  E   FP
Sbjct: 1005 IELEDQIERCEVVLFP 1020


>gi|256752386|ref|ZP_05493246.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
            CCSD1]
 gi|256748721|gb|EEU61765.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
            CCSD1]
          Length = 1101

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/1059 (38%), Positives = 622/1059 (58%), Gaps = 65/1059 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G+  + +++ K       AIAITD   ++  ++F ++A A GI+PI
Sbjct: 2    FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAQGIKPI 61

Query: 71   IGCQLDI---DMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IGC++ +    MQD    + N+          +VLL     GY+ L+++V+ +  ++   
Sbjct: 62   IGCEIYVAPRSMQDREYGIDNENY-------HLVLLAKDMTGYKNLMKIVT-VASIEGFY 113

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
               R+   +L+E  +EGLI L+   +G +         + A++  L +  +FG    Y+ 
Sbjct: 114  YKPRVDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLE 172

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H   ++ +   ++++L+    +PLVATN+  +L ++D +AH+VL+ +     +  +D
Sbjct: 173  LQDHGILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDED 232

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R     D  YLK+  EM ++FS   EA+ENT +IA  C+   + +   LP++   E  D 
Sbjct: 233  RMSFPTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDS 292

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +     LRN    GL  R    +       ++  +RLD+EL+VI +M +  YFLIV DF
Sbjct: 293  CEY----LRNLCYEGLYKRYKNPS-------KEVIERLDYELSVIEQMGYVDYFLIVWDF 341

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++AK N I  GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC
Sbjct: 342  IKFAKDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFC 401

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL  PY++VD + K+IP + 
Sbjct: 402  YERRQEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDVIAKMIPFEL 461

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A++ +   +     +  V +L++IS+ LEGL RHASTHAAG+VI   PL   V
Sbjct: 462  GMTID-KALSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYV 520

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+ ++   D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + + RGV +D   + 
Sbjct: 521  PLQKN--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVEKNRGVTIDFDSME 578

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +DD + Y L++   T G+FQLESSGM+Q +  ++P  +EDIIA +SLYRPGP+D I  Y 
Sbjct: 579  YDDPKVYELISKGETEGVFQLESSGMKQFMAELKPKNLEDIIAGISLYRPGPMDQIPRYL 638

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              KN  E IV  HPL+ P+L  T G ++YQEQVMQI + ++GYSL  +D++RRAM KK  
Sbjct: 639  ANKNHPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKM 698

Query: 723  EEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + M+++++ FI             GA +NG+ +  A  +F+ +  FA+Y FNKSHAAAYA
Sbjct: 699  DVMEQERKNFIYGIVDEEGNVIVPGALRNGLDEATANKLFDEMLDFANYAFNKSHAAAYA 758

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VI+YQTA++K +YPVEF+AA +   +DN++K+  + Q  R+  I+++PP +N     F V
Sbjct: 759  VIAYQTAYLKRYYPVEFMAALLNSFVDNLDKVAFYVQVCRKMGIKVLPPDINESDSYFTV 818

Query: 831  GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +++I + L+A+K VG      I+ E   +  F S+ DF  R+   +LN++ +ESL+ AG
Sbjct: 819  VEDKIRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAG 878

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT------FSDKITLEKF 943
            A   FG  R QLL + D + +  +    N  N   ++F   + T      F D   LE+F
Sbjct: 879  AFSSFGVRRSQLLSAYDKLMENIKKNRNNNLNGQISLFGEVEQTHGVGFEFPD---LEEF 935

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIR---GNN 994
                 S     E+  LG Y SGHPL+ Y   + K      +  K  EE +   +      
Sbjct: 936  P---KSRLLSMEKETLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQE 992

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +A ++ +K+ K T+  + + +VT  +     E   FP
Sbjct: 993  VVIAGVIATKKIKFTKNNNIMAFVTIEDLYGTVEVIVFP 1031


>gi|157413280|ref|YP_001484146.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT
            9215]
 gi|157387855|gb|ABV50560.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT
            9215]
          Length = 1165

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/1057 (37%), Positives = 626/1057 (59%), Gaps = 56/1057 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L  HS YSLL+GA  ++ I+D+ +     +IA+TD   ++  L+  +K     I+PI
Sbjct: 3    FVPLHNHSDYSLLDGASQISKIVDRASDLGMESIALTDHGVMYGVLDLVKKCKEKNIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IG ++ +       +      P P       +V+L     GY+ L++L +  +L     +
Sbjct: 63   IGNEMYV-------INGSIDDPQPKKEKRYHLVVLAKNYTGYKNLVKLTTISHLNGMRGR 115

Query: 128  SV--RICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             +  R C+  S L +  ++GLI+ T    G I +A       VAE   + +KK+F D  Y
Sbjct: 116  GIFSRPCIDKSLLSKY-SDGLIVSTACLGGEIPQAILKGRLDVAEDIAIWYKKIFSDDFY 174

Query: 184  VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H    DR    +++++   H++ ++ATN++ +LS  D EAHD L+ V    ++S 
Sbjct: 175  LEIQDHGSIEDRIVNVELIKIGKKHQIKVIATNDAHYLSNMDVEAHDALLCVLTGKLISD 234

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296
            + R R T   Y+K+ +EM+ +F D      + EA+ NTVEI+++           +P+F 
Sbjct: 235  EKRLRYTGTEYIKSENEMLELFKDHIDDVSINEAVNNTVEISQKVEVFDLFGNYRMPKFP 294

Query: 297  EKECDD---IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
              E  D   +  +  NE       GL  RL +    +    + Y++RL  EL +I  M F
Sbjct: 295  LNEDTDSFSLLTQLSNE-------GLLKRLKKNNFTE--VDESYKKRLSTELKIIKDMGF 345

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL+V D+I++A+ N+IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP R 
Sbjct: 346  PDYFLVVWDYIKFARDNSIPVGPGRGSAAGSLVAYSLQITNIDPVEHGLLFERFLNPARK 405

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD D DFC DRR+EVI YV N+YG ++VAQIITF  + +KA L+DV R L +PY + D
Sbjct: 406  SMPDIDTDFCIDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEAD 465

Query: 474  RLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            +L KLIP     P  L  + D +     FR+  + D  V + ++++ ++EG  +    HA
Sbjct: 466  KLAKLIPVVRGKPYKLNEMIDKNSPSQEFRDKYINDNRVKKWVDLALRIEGTNKTYGVHA 525

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            AG+VI   PL +LVP+ R+    + +TQ++M  IE  GL+K DFLGLK LT++ K++  +
Sbjct: 526  AGVVIASDPLDELVPLQRNNEGQI-ITQYSMDDIESLGLLKMDFLGLKNLTMIDKTVSLI 584

Query: 590  AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q  G  +++  +P +D +T+ L+      GIFQLESSGM+Q ++  +P+ +EDI ++++
Sbjct: 585  NQSTGKIINVDDLPQNDSKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILA 644

Query: 649  LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            LYRPGP+D  ++  + NRKNG EK+   HP I  +L ET G+++YQEQ+M+IAQ L+GYS
Sbjct: 645  LYRPGPLDAGLIPKFINRKNGNEKVDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYS 704

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L +AD+LRRAMGKK   EM K +  F+ G+ K G+++ +A ++F+ +  FA+Y FNKSH+
Sbjct: 705  LGDADLLRRAMGKKKVSEMVKHRNIFVKGSMKKGVNEKLANDLFDQMVLFAEYCFNKSHS 764

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
             AY  ++YQTA++K H+PV ++AA +++   + +K++++  +    NI+++ PS+N   V
Sbjct: 765  TAYGAVTYQTAFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMNIEVISPSINFSGV 824

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            DF + +N+I + L+AIK +G +  R+I+E  ++   F+SL D C R+ S  LN+R LESL
Sbjct: 825  DFTIKNNQILFGLSAIKNLGESAIRNIIENRNSFGIFESLSDLCDRLPSNVLNKRSLESL 884

Query: 886  VFAGALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK- 942
            +  GALD F    +R QLL  L+++  +A    ++R +   N+F   K  FS+   L+  
Sbjct: 885  IHCGALDEFSNDNNRAQLLSDLEHVIDWASSRNRDRLSGQGNLF-DSKEEFSNVAFLDTQ 943

Query: 943  -FSVENSSV--RFENEQRVLGFYFSGHPLD-VYKP--ILRKMGIKGYEESVATIRGNNIR 996
               V++ S+  + + E+++LGFY S HPL  + KP  ++  + I   EE+    +   + 
Sbjct: 944  LKKVDDYSLIEKLKLEKQLLGFYLSDHPLKHLAKPAKLISPINISQLEETKDRTK---VS 1000

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            L  M+   +Q  TRKG R+  V   + +   EA  FP
Sbjct: 1001 LVVMIPDLKQITTRKGDRMAIVQLEDLSGSCEAIVFP 1037


>gi|282856832|ref|ZP_06266091.1| DNA polymerase III, alpha subunit [Pyramidobacter piscolens W5455]
 gi|282585342|gb|EFB90651.1| DNA polymerase III, alpha subunit [Pyramidobacter piscolens W5455]
          Length = 1155

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/1047 (37%), Positives = 613/1047 (58%), Gaps = 60/1047 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL VH+ YSLL+GA+   ++  + A    PA+A+TD   ++ A+EF Q+  +AG++P
Sbjct: 6    NFVHLHVHTEYSLLDGAIRCADLAKRCAEWGMPAVAMTDHGVMYGAVEFYQQCKSAGVKP 65

Query: 70   IIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS----RMYLLD 123
            IIGC++ +  D  DN +              ++LL    EGY  LI+LVS    R +   
Sbjct: 66   IIGCEMYVSPDGIDNKEKKYN---------HLLLLAENDEGYHNLIKLVSIANTRGFYYK 116

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182
                  R+    L +  ++GLI  +   +G I R       + A +R   ++ +FG +  
Sbjct: 117  P-----RVDHQLLAQY-SKGLICSSACLAGEIPRFLLEGDEKGALERAQMYRDIFGAESF 170

Query: 183  YVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ +  ++  ++   ++ ++++A  +  PL+ATN++ +L+  DY+ H++L+ V    V++
Sbjct: 171  FLEIMPNQLPEQVAVNKMIIEMARKNNFPLLATNDAHYLNSSDYDWHELLLCVGTKKVIT 230

Query: 242  QKDRP--RVTPDHYLKNRSEMVSIF-SDLPEALENTVEIARRC--SFILQVHAPILPRFI 296
               R   RV  D Y ++  EM   F S+ P++LENT+ IA RC   F L     +LP+F 
Sbjct: 231  DPGRMSFRVN-DFYFRSAQEMWGYFGSEAPDSLENTLRIAERCHFDFALNTGDYLLPKFE 289

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E   +    +  L   A +GL+ RL    I       +Y  RL +EL +I +MKF GY
Sbjct: 290  IPEGMTL----DTYLEKMARSGLKERLGVEVIP-----DEYENRLSYELGIIKQMKFPGY 340

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLI+AD I   K + IP+GPGRGS AGS+ AY++ IT++DP+RF L+FERFLNP+R+SMP
Sbjct: 341  FLIIADVIGACKSHGIPIGPGRGSAAGSLVAYSMKITELDPIRFGLIFERFLNPERVSMP 400

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D D     RD +I+YV +KYG E V+QIITFG +++K A++DVGRA+ MPY+ V+++ 
Sbjct: 401  DIDTDVSDKGRDRLIKYVVDKYGVENVSQIITFGRMKSKQAIKDVGRAMGMPYADVNKVA 460

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
             L+P D A  +  +A+      ++   +D  + +LL  +  +EGL RH S HAAG+VI  
Sbjct: 461  NLVP-DGAKSIK-EAVEQTPDLQDLEKSDSQISKLLTSASSMEGLARHCSQHAAGVVITP 518

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            +PL+ LVP+ R +      TQF+M  +   GL+K DFLGL+TL++L++++  + + G  +
Sbjct: 519  KPLTDLVPV-RQIEEGQVATQFSMDPVASLGLVKMDFLGLQTLSILEEAVANVKRNGTTL 577

Query: 597  -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             DL+ +P DD E Y LL    TLGIFQLESSGMR+ ++ MQPD   D++A+++LYRPGP+
Sbjct: 578  GDLNRLPLDDPEVYRLLQNADTLGIFQLESSGMRRLIKKMQPDRFADLVAILALYRPGPL 637

Query: 656  DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            ++ +V  Y N K+G E++  +HPL++P+L ET GV++YQEQVM+ A  L+GY+L  AD+L
Sbjct: 638  ESGMVDQYVNCKHG-EEVHYLHPLLEPVLNETYGVVLYQEQVMKCASTLAGYTLGGADLL 696

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK K  MD+ +  FI+GA+KNGI       IF+++ KFA YGFNKSH+AAYA+++
Sbjct: 697  RRAMGKKKKSVMDEHRSIFINGAAKNGIDAEKGAEIFDIIEKFAGYGFNKSHSAAYALVT 756

Query: 774  YQTAWMKTHYPVEFLAASMTLEMD-NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            YQTAW+K HYP EF+AA ++ ++    E + ++ ++ R   I ++ P +N    DF    
Sbjct: 757  YQTAWLKVHYPKEFMAAYLSSKIGAKKEVMAEYVREVRASGIDVLAPDINQSYADFTATK 816

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            N I + L  +  VG      I +A  +  PF    DF  RVD   + + V+ESL+ AGA 
Sbjct: 817  NEIRFGLGGVTKVGEAALNSIFKAREEGGPFKGFWDFIVRVDKHSVGKAVIESLIKAGAF 876

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL SLDN+ + A    ++      ++F     T  D+  L +    N + +
Sbjct: 877  DSLNSNRKQLLTSLDNLFEVAS--RRDSQGDQGSLFGDM--TSEDQPELAEVDDLNITEK 932

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-----RGNNIRLAAMVVSKQQ 1006
             E E+  LG Y SGHP D +    R++  +     +A +            A ++   Q+
Sbjct: 933  LEMEKEALGMYISGHPFDGF----RRLAAQKANARIADLPYWKSDTTTPTFAGLLSGWQE 988

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T++G  +G  +  +   E +   FP
Sbjct: 989  KMTKRGDAMGIFSIDDGEDEIKVICFP 1015


>gi|317121217|ref|YP_004101220.1| DNA polymerase III catalytic subunit, DnaE type [Thermaerobacter
           marianensis DSM 12885]
 gi|315591197|gb|ADU50493.1| DNA polymerase III catalytic subunit, DnaE type [Thermaerobacter
           marianensis DSM 12885]
          Length = 1245

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/944 (40%), Positives = 567/944 (60%), Gaps = 56/944 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL VHS YSLL+GA  +  +  + A    PA+A+TD   ++ A++F +     GI+PI
Sbjct: 4   FVHLHVHSEYSLLDGAARVGELAARAAELGMPALALTDHGVMYGAIDFYKACKKHGIKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IGC+L +      + T   + P     S  ++ L     GY+ LI++VSR Y  +     
Sbjct: 64  IGCELYL-----ARRTRHDREPKVDDQSYHLLALAQNETGYRNLIKIVSRAYA-EGFYYK 117

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            R     L E  +EGLI+ +G     I R       + A K +  + ++FGDR Y  +Q 
Sbjct: 118 PRADKELLAE-HSEGLIVTSGCIGSEIPRLLLEGREEEALKAVRWYLEVFGDRFYFEIQD 176

Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H    +R   +++++LA   ++P+VATN+  +L ++D  AH+VL+ +     +    R R
Sbjct: 177 HGIPEERRAYARILELARRFDVPVVATNDVHYLHKDDAAAHEVLLCIQTGKTLDDPHRMR 236

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + YLK+  EM ++F D+PEAL NTV++A RC    +    +LP +   E  D    
Sbjct: 237 FDGAEFYLKSPEEMAALFRDVPEALANTVQLAERCQLEFEFGRFLLPHYEVPEGHDAA-- 294

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + LR       E +L +     G    D   RL+ EL VI RM +  YFLIV DF+ +
Sbjct: 295 --SYLRYLC----ETKLPERYPDAGSEVWD---RLNHELAVITRMGYPAYFLIVWDFVDY 345

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A++N I VGPGRGS AGS+ AY L ITDIDPLR++LLFERFLNP+R++MPD DIDF   R
Sbjct: 346 ARRNGIAVGPGRGSAAGSLVAYVLGITDIDPLRYNLLFERFLNPERVTMPDIDIDFDDHR 405

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           RDEVI YV  KYG +RVAQIITFG + A+A +RDVGR + +PY +VD++ K++P      
Sbjct: 406 RDEVIDYVVRKYGRDRVAQIITFGRMLARAVIRDVGRVMGLPYGEVDKIAKMVPAQLG-- 463

Query: 487 VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
           ++L QA+      ++A    P V +L+++++KLEG+ RHAS HAAG+VIG  PL + VP+
Sbjct: 464 ITLDQALEASPELKQAYEQQPVVRQLVDMARKLEGMPRHASVHAAGVVIGRDPLMEHVPL 523

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL----- 600
            R ++    VTQF M  +E+ GL+K DFLGL+TL ++Q++   +   G +  L+      
Sbjct: 524 QR-MQDGSTVTQFPMTTLEELGLLKMDFLGLRTLHVIQETEAIINTTGARDVLAGESGGG 582

Query: 601 ---------------IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
                          IP DD  T+  ++   T  +FQ+ESSG  Q L  ++P  IED+IA
Sbjct: 583 GAEEPGAAPRFRVRDIPLDDPATFEAMSRGDTAAMFQVESSGFTQMLRSLRPSSIEDLIA 642

Query: 646 LVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            V+L+RPGP+ + +V  +  RK+G+  +   HP ++P+LKET G I+YQEQVMQIA +++
Sbjct: 643 AVALFRPGPLGSGMVDDFIKRKHGQVPVEYPHPWLEPILKETYGTIVYQEQVMQIASVMA 702

Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
           G++L EAD+LRRAMGKK  EEM KQ+E+F++GA   G+ + +A +IF+L+  FA YGFNK
Sbjct: 703 GFTLGEADLLRRAMGKKKPEEMQKQREKFLAGAEAKGVDRKLAEHIFDLMEYFAGYGFNK 762

Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
           SH+AAY  ++Y TA++KTHYP  ++AA+++  M N +++ ++  + R+  I ++PP +N 
Sbjct: 763 SHSAAYGYLAYVTAYLKTHYPAPYMAATLSSVMSNSDRVAEYIGECRRLGIPVLPPDINE 822

Query: 824 PCVDFKV-------GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSK 875
               F V       G   I + LAA+K VG      I+ A     PF SL+DFC RVD +
Sbjct: 823 SQALFTVVPDPRAPGGQAIRFGLAAVKNVGFGAIESIVSAREQGGPFRSLDDFCRRVDLR 882

Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
           ++NRR LESL+ AGA D  G+ R +LL  L+ + + AQ  +K R
Sbjct: 883 QVNRRALESLIKAGAFDSLGHPRARLLAGLEEVMERAQRWQKER 926


>gi|310779267|ref|YP_003967600.1| DNA polymerase III catalytic subunit, DnaE type [Ilyobacter
           polytropus DSM 2926]
 gi|309748590|gb|ADO83252.1| DNA polymerase III catalytic subunit, DnaE type [Ilyobacter
           polytropus DSM 2926]
          Length = 1138

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/979 (39%), Positives = 596/979 (60%), Gaps = 38/979 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +FVHL +H+ YSLL+G   ++  LD+       ++AITD  N+F A+EF +KA + GI+P
Sbjct: 4   NFVHLHLHTEYSLLDGVGKIDEYLDRAKKLGMRSMAITDHGNMFGAVEFYKKALSKGIKP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128
           I+G +  +       M  +    F     +VLL     GY+ L++L S  YL  +G    
Sbjct: 64  IVGMEAYLS---EFSMEEKSGRNF----HLVLLAKNETGYKNLMKLSSEAYL--KGFYYR 114

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLFG-DRLYVNL 186
            RI    L +  ++G+I L+    G + +      S+   +K +  + ++FG +  YV L
Sbjct: 115 PRIDKEILAQ-HSKGIIALSACMQGELSKRILDEESEEDLDKAVNEYVEIFGKEDFYVEL 173

Query: 187 QRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           Q + G  +  +    +  LA  H+L +VATN++ ++   D+   D+L+ V   + +S + 
Sbjct: 174 QSN-GIKKQEKLNDALYTLAKKHDLKVVATNDTHYVYYGDHTLQDILICVQTGSKISDEK 232

Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
           R ++  D  +LK+R +M+        A++NTVEIA +C+  L+      P +    C D 
Sbjct: 233 RMKIETDQLFLKSREQMLEELGKYDRAVDNTVEIADKCNLELEFGVFKFPEYKIPTCVDS 292

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +E    LR     GL+ R       K    +D  +R+++EL+VI +M ++GYF++V DF
Sbjct: 293 IREF---LRKLVYQGLKRRY------KNDLEKDVIERVEYELDVINKMDYAGYFVVVWDF 343

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           I +AKKN IPVGPGRGS AGS+ AY+L IT++DP++++L+FERFLNP+R+SMPD DID C
Sbjct: 344 IDYAKKNRIPVGPGRGSAAGSMVAYSLGITELDPMKYNLIFERFLNPERISMPDIDIDIC 403

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
           Q+RR EVI YV  KYG +RVAQIITFG+++A+AA+RDVGR + +P  +VD++ KLIP  P
Sbjct: 404 QERRQEVIDYVGEKYGKDRVAQIITFGTMKARAAIRDVGRVMNVPLFKVDKIAKLIP--P 461

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              +  +A+ +    RE    D     L+E S++LE   RHAS HAAG+VI   PL+  V
Sbjct: 462 FFSLD-RALKEVEELREVYETDSESQELIEYSKRLENTVRHASIHAAGVVITKDPLTDDV 520

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
           P+Y D ++ +  TQ+ MK +E+ GL+K DFLGL+ LT+LQ+++D++ +    ++DL+ IP
Sbjct: 521 PLYSDTKTKVVSTQYQMKELEELGLLKMDFLGLRNLTILQRTVDYIREDTNEEIDLNKIP 580

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
            D  E Y LL    TLG+FQLES G+R+ L  ++PD  EDIIA+++LYRPGP+ + +V  
Sbjct: 581 LDSLEVYRLLQKGDTLGVFQLESHGIRKLLMKLKPDRFEDIIAVLALYRPGPLGSGMVDD 640

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
           +   KNG+  I   H  ++ +LKET GVI+YQEQVM+IA +++ Y+L EAD+LRRAMGKK
Sbjct: 641 FIEVKNGRAAIKYPHQSLEDVLKETYGVILYQEQVMKIANIMADYTLGEADLLRRAMGKK 700

Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               M++ + +F+  A K G S+  A  IF L+ KFA YGFNKSH+AAYA+++Y TA+ K
Sbjct: 701 NMAIMEENRNKFVKRAVKKGYSEEKATEIFNLIDKFAGYGFNKSHSAAYALVAYWTAYFK 760

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             YP  + AA MT E +N+EK+  + +DA++  I +  P++N     F V  + + + ++
Sbjct: 761 GCYPKHYYAALMTSERNNIEKLAVYVEDAKEHGIGVALPNINKISTRFIVDGDLVRFGMS 820

Query: 841 AIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
           AIK VG T    I  E + +  + + E+F +R   + +N++ LE+L+ +GALD    +R 
Sbjct: 821 AIKNVGETLIERIKAEHARNGDYTTFENFVTRGKKEGVNKKALEALILSGALDSIPGNRR 880

Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENSSVRFENEQR 957
           Q  +S++    YA  V K    +  N+F   + T       ++E++ +EN       E+ 
Sbjct: 881 QKYESMEKALNYATKVMKEDDIQQMNLFGEARATIEKFQMPSVEEYKMENL---LTGEKE 937

Query: 958 VLGFYFSGHPLDVYKPILR 976
            LGFYF+GHPLD Y+ +L+
Sbjct: 938 FLGFYFTGHPLDKYRQMLK 956


>gi|86604788|ref|YP_473551.1| DNA polymerase III subunit alpha [Synechococcus sp. JA-3-3Ab]
 gi|86553330|gb|ABC98288.1| DNA polymerase III, alpha subunit [Synechococcus sp. JA-3-3Ab]
          Length = 1161

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/1057 (36%), Positives = 624/1057 (59%), Gaps = 58/1057 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L +HS YSLL+GA  L  +++++ A   P +A+TD   ++ A+E  +   + GI+P
Sbjct: 2    AFVPLHLHSEYSLLDGASQLPLLIEQVVAMGLPGLALTDHGVMYGAIELVKLCKSKGIKP 61

Query: 70   IIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IIG ++ +   D++D  +        +P    +VL  +T +GY+ L++L +  +L  QG 
Sbjct: 62   IIGNEMYVINGDIRDKSRK-------YPKYHQVVLAKNT-QGYKNLVKLTTISHL--QGV 111

Query: 127  QS----VRICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            Q      R C++  +L +   EGLI+ +G  +G + +A      ++A +    +++ FGD
Sbjct: 112  QGKGIFARPCINKEYLAQY-KEGLIVTSGCLAGEVPQAILQGRPEIARQVAAWYQEQFGD 170

Query: 181  RLYVNLQRHRGY--DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
              Y+ +Q H GY  DR+   Q+V++A    +P++ TN+S F+S  D EAHD L+ +    
Sbjct: 171  DYYIEIQDH-GYREDRFVNVQLVRIARELGIPIILTNDSHFISCWDVEAHDALLCIQTGK 229

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCS---FILQVHA 289
             +++K+R R +   YLK+  EM  +  D      + EA+ NT+++  +        +   
Sbjct: 230  SLTEKNRLRYSGTEYLKSPEEMRRLCRDHLEQEVIDEAIANTLKVLEKIEGYDLFGETRM 289

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
            P  P       D       + L   A  GL  R   G        ++Y++RL FELN+I 
Sbjct: 290  PDYPVPPGHSAD-------SYLTELAWQGLAKRC--GVAYPDQIPENYQERLRFELNIIQ 340

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +  FS YFL+V D++++A+++ IPVGPGRGS AGS+ AYAL IT+IDP+++ LLFERFLN
Sbjct: 341  QKGFSSYFLVVWDYVRYAREHGIPVGPGRGSAAGSLVAYALQITNIDPVKYGLLFERFLN 400

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R SMPD D DFC +RR E+I YV  KYG ERVAQIITF  + +KA L+DVGR L +PY
Sbjct: 401  PERQSMPDIDTDFCIERRGELIDYVTRKYGQERVAQIITFNRMTSKAILKDVGRVLDIPY 460

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHA 525
            ++ D++ KLIP     P  L+ +  ++     F+E    DP+  R +E+++ LEG  +  
Sbjct: 461  AEADKMAKLIPVSRGKPAKLEEMIGENTPAPEFKEKYEKDPTTHRWIELARLLEGTNKTF 520

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
              HAAG+VI   PL ++VP+  +    + +TQ++M+ IE  GL+K DFLGL+ LT++Q++
Sbjct: 521  GVHAAGVVISKDPLDEIVPLQYNNEGQI-ITQYSMEDIESLGLLKMDFLGLRNLTMIQRA 579

Query: 586  LDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            ++ + + RGV +DL  +P DD +TY LL      GIFQLESSGM+Q +  ++P  +EDI 
Sbjct: 580  VELIREHRGVTIDLDNLPLDDEKTYQLLEKGELEGIFQLESSGMKQVVRELKPSNLEDIS 639

Query: 645  ALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++++LYRPGP+D  ++  + +RK+G++ +   H L+ P+L++T G I+YQEQ+M+IAQ +
Sbjct: 640  SVLALYRPGPLDTGMIPDFIDRKHGRKPVTYAHDLLKPILQDTYGAILYQEQIMRIAQDM 699

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +GY+L +AD+LRRAMGKK   EM+K +E+F+ GA + G++K +A  +F+ +  FA+Y FN
Sbjct: 700  AGYTLGQADLLRRAMGKKKVSEMEKHREQFVRGAVERGVAKEVATELFDQMVAFAEYCFN 759

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            KSH+ AY +I++QTA++K +YP E++AA ++    + +K++++        IQI PP +N
Sbjct: 760  KSHSTAYGLITFQTAYLKANYPTEYMAALLSSVGGDQDKVQRYITYCLSIGIQIEPPDIN 819

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRV 881
               +DF    + I + L A+K VG    ++I+ A  A  PF SL DFC RVD   +NRR 
Sbjct: 820  RSGLDFTPQGSSILFGLGAVKNVGEGAIQNILAARQAGGPFTSLADFCQRVDLHVVNRRA 879

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---AHEKGTFSDK- 937
            +ESL+ AGA D    +R QL+  LD I  +A    K++     ++F    +++G      
Sbjct: 880  IESLICAGAFDGISGNRKQLMADLDPILNWAAEQAKSKAIGQASLFDLLGNDQGFIEAPR 939

Query: 938  -ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
                E F  +   +R E E  +LGFY S HPL   +   R +      +        ++ 
Sbjct: 940  GPATEDFPPQE-KLRLERE--LLGFYVSDHPLRRIQEQARLLAPVNLSDLSGYAADTSVG 996

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + A++ + +   T++G R+  +   +     EA  FP
Sbjct: 997  ILALLTAIKTVTTKRGDRMAILQLEDLTGSCEAVIFP 1033


>gi|123966261|ref|YP_001011342.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT
            9515]
 gi|123200627|gb|ABM72235.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT
            9515]
          Length = 1165

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/1052 (37%), Positives = 617/1052 (58%), Gaps = 46/1052 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L  HS YSLL+GA  ++ I+D+ +     +IA+TD   ++  L+  +K    GI+PI
Sbjct: 3    FVPLHNHSDYSLLDGASQVSKIVDRASELGMESIALTDHGVMYGVLDLVKKCKDKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IG ++ I       +      P P       +V+L    EGY+ L++L +  +L     +
Sbjct: 63   IGNEMYI-------INGSIDDPQPKKEKRYHLVVLAKNHEGYKNLVKLTTISHLNGMRGR 115

Query: 128  SV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +  R C+   L E   +GLI+ T    G I +A       VAE     +K L G+  Y+
Sbjct: 116  GIFSRPCIDKSLLEKYKDGLIISTACLGGEIPQAILKGRIDVAENIACWYKNLLGEDFYL 175

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +Q H    DR    +++++   +++ ++ATN++ ++S  D EAHD L+ V    ++S +
Sbjct: 176  EIQDHGSMEDRIVNVEMIRIGKKYQIKVIATNDAHYISNMDVEAHDALLCVLTGKLISDE 235

Query: 244  DRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIE 297
             R R T   Y+K+  EM+ +F+D      + EA+ NTVE++++           +P+F  
Sbjct: 236  KRLRYTGTEYIKSEIEMLRLFNDHIDNESIKEAINNTVEVSQKIEVFDLFGTYRMPKFPL 295

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            KE    +K+  + L   +  GL  RL +  + +    + Y +RL  EL +I  M F  YF
Sbjct: 296  KE----EKDSLSFLTKISKEGLLKRLNKANLDE--VDEIYTKRLSSELKIINDMGFPDYF 349

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+V D+I++A+ N+IPVGPGRGS AGS+ A++L IT+IDP++  LLFERFLNP R SMPD
Sbjct: 350  LVVWDYIKFARDNSIPVGPGRGSAAGSLVAFSLQITNIDPVKHGLLFERFLNPARKSMPD 409

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D DFC DRR EVI YV N+YG ++VAQIITF  + +KA L+DV R L +PY + D+L K
Sbjct: 410  IDTDFCIDRRSEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGESDKLAK 469

Query: 478  LIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            LIP     P  L  + D       FR+  L D  V R ++++ ++EG  +    HAAG+V
Sbjct: 470  LIPVVRGKPYKLNEMIDKKSPSPEFRDKYLKDSKVKRWVDLALRIEGTNKTYGVHAAGVV 529

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQR 592
            I    L  LVP+ R+    + +TQ++M  IE  GL+K DFLGLK LT++ K++  + +  
Sbjct: 530  IASESLDMLVPLQRNNEGQI-ITQYSMDDIESLGLLKMDFLGLKNLTMIDKTISLIESST 588

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G K+++  +P +D++T+ L+      GIFQLESSGM+Q ++  +P+ +EDI ++++LYRP
Sbjct: 589  GQKINVDELPPNDNKTFDLIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALYRP 648

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+D  ++  + NRKNG EKI   HPLI  +L ET G+++YQEQ+M+IAQ L+GYSL +A
Sbjct: 649  GPLDAGLIPKFINRKNGSEKIDFPHPLIKSILTETYGIMVYQEQIMKIAQDLAGYSLGDA 708

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK   EM K +  FI GA K G+ K IA ++F+ +  FA+Y FNKSH+ AY 
Sbjct: 709  DLLRRAMGKKKVSEMVKHRNIFIEGACKKGVDKKIANDLFDQMVLFAEYCFNKSHSTAYG 768

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++YQTA++K HYPV ++A+ +++   + +K++++  +     I+++ PS+N+  +DF V
Sbjct: 769  AVTYQTAFLKAHYPVAYMASLLSVNAGSSDKMQRYISNCYSMGIEVISPSINSSGIDFTV 828

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              ++I + L+AIK +G +  ++I+E       F S  D C R+ S  LN+R LESL+  G
Sbjct: 829  KKDQILFGLSAIKNLGDSAIKNIIENRNKLGNFKSFSDLCDRLPSNILNKRNLESLIHCG 888

Query: 890  ALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VE 946
            ALD F    +R QL   LD + ++A    ++R +   N+F         + +L K S V+
Sbjct: 889  ALDEFSENKNRAQLFSDLDYVMEWASSRNRDRISGQGNLFDSISNIEHKEFSLPKGSKVD 948

Query: 947  NSSV--RFENEQRVLGFYFSGHPLD-VYKP--ILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            + S+  + + E+++LGFY S HPL  + KP  ++  + I   E S    +   + L  M+
Sbjct: 949  DYSLIEKLKLEKQLLGFYLSDHPLKHLAKPAKLVSPISISQLENSHDRTK---VSLVGMI 1005

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +Q  TRKG R+  V   + +   EA  FP
Sbjct: 1006 PELKQITTRKGDRMAIVQLEDLSGTCEAIVFP 1037


>gi|291567264|dbj|BAI89536.1| DNA polymerase III alpha subunit [Arthrospira platensis NIES-39]
          Length = 1219

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/1087 (36%), Positives = 629/1087 (57%), Gaps = 80/1087 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  L  ++ +      PAIA+TD   ++ A+E  +   + GI+P
Sbjct: 2    SFVGLHIHSDYSLLDGASQLPQLVSRAVELGMPAIALTDHGVMYGAIELIKICRSKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQS 128
            IIG ++ I +  ++ +  +G   +  V    +L    +GY+ L++L +  +L   QGK  
Sbjct: 62   IIGNEMYI-LNADVTVQQRGIKKYHQV----VLAKNTQGYKNLVKLTTISHLKGFQGKGI 116

Query: 129  -VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              R C++  L E   EGLI+ +    G + +A       +A + +  +K++FGD  Y+ +
Sbjct: 117  FARPCINKELLEEYHEGLIVTSACLGGEVPQAILQRRMDIARQTVEWYKRVFGDDYYLEI 176

Query: 187  QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    DR     +VQLA   E+ +VATN+S F+S  D EAHD L+ +    ++++ +R
Sbjct: 177  QDHGSPEDRIVNVALVQLAREFEVKIVATNDSHFISCNDVEAHDALLCINTQKLITEDNR 236

Query: 246  PRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCS-FILQVHAPILPRFIEK 298
             R +   YLK+  EM+ +F D LP     EA+ NT+E+A +   +   +  P +P +   
Sbjct: 237  LRYSGTEYLKSAEEMMQLFRDHLPDEVIKEAIANTLEVAEKVEPYTGILGEPRIPDYPIP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRL-AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                     +  L   A  GL+ RL AQG   +      YR+RL++EL ++ +M F+ YF
Sbjct: 297  P----NHTADTYLEEIAWEGLKKRLNAQG---RSEIKPVYRERLEYELKMMQKMGFATYF 349

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+V D+I+ A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD
Sbjct: 350  LVVWDYIKHARDNHIPVGPGRGSAAGSLVAYALQITNIDPVHHGLLFERFLNPERKSMPD 409

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D DFC DRRDE+I+YV +KYG E+VAQIITF  + +KA L+DV R L +PYS+ D++ K
Sbjct: 410  IDTDFCIDRRDEMIKYVTSKYGEEKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAK 469

Query: 478  LIPNDPAHPVSLQAIADDS----RFREA--------------RLADPSVDRLLEISQKLE 519
            +IP     P  L+ +  D      F++A               +   +V + ++++ ++E
Sbjct: 470  MIPVSRGKPTKLKVMISDQSPSPEFKQAYDNDFVPIKNDAGEEVGTIAVRQWVDMAIRIE 529

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G  +    HAAG+VI  +PL ++VP+ R+    + +TQ+ M+ IE  GL+K DFLGLK L
Sbjct: 530  GTNKTFGVHAAGVVISKQPLDEIVPLQRNNDGSV-ITQYFMEDIESLGLLKMDFLGLKNL 588

Query: 580  TLLQKSLDFLAQRG--------------------VKVDLSLIPFDDHETYHLLTTKGTLG 619
            T++Q++L++++Q                       K  +  +P D  +TY +L      G
Sbjct: 589  TIIQRTLNYISQNHHLDIDPYNLAAEERKAMDILAKGSVKKMPEDVAKTYKILERGDLEG 648

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPL 677
            +FQLESSGMRQ ++ ++P  IEDI ++++LYRPGP+D  ++  + NRK+ +E I   H L
Sbjct: 649  LFQLESSGMRQIVKDLKPSSIEDISSILALYRPGPLDAGLIPQFINRKHKREPIRYEHKL 708

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++P+L ET G+++YQEQ+M++AQ L+GYSL +AD+LRRAMGKK   EM K +E FI GA+
Sbjct: 709  LEPILNETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKASEMQKHRETFIDGAT 768

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            +NG+ + IA ++F+ + KFA+Y FNKSH+ AY  I+YQTA++K +YP E++AA +T    
Sbjct: 769  RNGVPQNIAEHLFDQMVKFAEYCFNKSHSTAYGYITYQTAYLKANYPTEYMAALLTENSG 828

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
            N +K+K + +  +   I ++PP +N   VDF   +NRI + L+AIK VG     H++   
Sbjct: 829  NTDKVKAYIESCKHLGIDVVPPDINRSNVDFTPIENRIVFGLSAIKNVGDGAIEHLLSVR 888

Query: 858  AD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
             +  PF SL D C R++ + +N R LESL+ +GA D    +R Q ++ L+ +  +AQ   
Sbjct: 889  EEGGPFRSLADLCDRINLQMVNSRALESLIKSGAFDSLHANRKQSIEYLNIVIPWAQDRA 948

Query: 917  KNRTNKHENIF------AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            KNR     N+F        E  + S + T  K        + + E+ +LGFY S HPL  
Sbjct: 949  KNREIGQTNLFDLVNYANTESNSPSGEPTFPKSDDYAPKDKLQFEKELLGFYVSDHPLKS 1008

Query: 971  YKPILRKMGIKGYEESVATIRGNN----IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
                L   G+     +V  +        +++AA +++ +   T+KG R+ ++   +   +
Sbjct: 1009 ----LLDSGVLPDNVTVDKLSEQKSKAAVKVAATLINIKPHLTKKGDRMAFLLLEDLTGQ 1064

Query: 1027 YEANFFP 1033
             +A  FP
Sbjct: 1065 IDAVVFP 1071


>gi|187734882|ref|YP_001876994.1| DNA polymerase III, alpha subunit [Akkermansia muciniphila ATCC
            BAA-835]
 gi|187424934|gb|ACD04213.1| DNA polymerase III, alpha subunit [Akkermansia muciniphila ATCC
            BAA-835]
          Length = 1174

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1057 (39%), Positives = 607/1057 (57%), Gaps = 66/1057 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS------QKAC 63
            SFVHL  H+ YSLL+GA+ + +++ + +    PA+A+TD  NLF A+E         K+ 
Sbjct: 4    SFVHLHNHTEYSLLDGAVHIKDLIAECSRMGMPAVAVTDHGNLFGAIELVMETNSLNKSV 63

Query: 64   AAG------------IQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            AA             ++PI GC++ +     ++K    G+  +     ++LL     G+Q
Sbjct: 64   AAWNKEHPEGPQKQEVKPIFGCEVYLSPTPISVKKQLPGRRKYT---HLLLLAENETGWQ 120

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L++LVSR +L +      R+ +  L+E   EGLI  T   +GP++     +  + AE+ 
Sbjct: 121  NLVKLVSRSHL-EGFYYKPRVDMETLREF-HEGLICCTACIAGPLNEWLLNDQPEKAEEA 178

Query: 171  LLTFKKLFGD-RLYVNLQRHRGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            LL  K +FGD  ++V LQ H G +  ++   ++V++A     P+VATN+  FL +ED++ 
Sbjct: 179  LLALKDIFGDDNIFVELQDH-GMEEQKKCLPELVRIARKTNTPIVATNDVHFLRKEDHDM 237

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            HDVL+ +  +  ++   R R + + YLK+  EM  +F D PEA+ENT++IA RC+  +++
Sbjct: 238  HDVLICIGTNEKLASPKRMRYSTEVYLKSPEEMREVFKDYPEAVENTLKIAERCNVAIKL 297

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
             +    ++ E    D    EE  LR     GLE R  +  +A     ++ R RLD+EL +
Sbjct: 298  DSTSTEKYPEFGTPDGSSREEY-LRKVCYKGLEERYGKERVAAD---KELRDRLDYELGI 353

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I ++KF  YFLI ADFI WAK ++IPVGPGRGS AGS+ AYA+ IT+IDPLRF L+FERF
Sbjct: 354  INQLKFPSYFLITADFINWAKDHDIPVGPGRGSAAGSLVAYAMKITNIDPLRFGLIFERF 413

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+S PD DIDFCQ RR EVI YV+ KYG   V+ IIT+G++ AK+ LRDV R + M
Sbjct: 414  LNPERVSPPDIDIDFCQTRRPEVIDYVRQKYGERAVSHIITYGTMGAKSVLRDVARVMDM 473

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
             Y+  DR+ KLI   P   V+LQ +   +   RE   +D     L   + +LEGL R+  
Sbjct: 474  SYADGDRISKLIETGPK--VTLQSSYKSNEELRELIASDEGYAELWGYATRLEGLIRNVG 531

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
             HAAG+VIGDRPL + V + RD  SD     V Q +M  I + GL+K DFLGLKTLT++ 
Sbjct: 532  VHAAGVVIGDRPLDEHVALTRDDLSDPHAAVVAQCDMSAIYEVGLLKMDFLGLKTLTVMH 591

Query: 584  KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
             +  +   R  +  L  +P DD ET  LL    T+G+FQLES GM           IEDI
Sbjct: 592  DAEQYARWRVPEFKLDSVPLDDRETLDLLNRGDTMGVFQLESGGMVDTCRRYGIQKIEDI 651

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            I L++LYRPG +  +      K G  ++   HPL++ +  ET GV+IYQEQV   A+LL+
Sbjct: 652  IDLLALYRPGAMQFMDEMIEVKKGLRQVEYEHPLLEQVSGETYGVMIYQEQVQAAAKLLA 711

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFN 762
            GY+L  AD+LRRAMGKK   +M K+K  F+ G  K N I +  A  IF+ + KFA YGFN
Sbjct: 712  GYTLGGADLLRRAMGKKDPAKMAKEKAHFVEGCWKTNQIDEKTATAIFDKIEKFAGYGFN 771

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            KSH+A Y  ISY TA++K H+PVEFL   M+ E +N +KI  F Q+A +  I+I+PP VN
Sbjct: 772  KSHSACYGHISYWTAYLKAHFPVEFLCGLMSNEANN-DKIGVFIQEANRMGIEILPPDVN 830

Query: 823  TPCVDFK-----VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKK 876
               + F       G   + Y LAAIK VG    + ++E    +  F S+ED C+R+DSK 
Sbjct: 831  KSMLKFTPEKMPSGKLAVRYGLAAIKNVGEGAMQILLEEREKNGEFSSMEDICNRLDSKS 890

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTF 934
            +N+++LESL+ AGALD     R  L + +D     A  V K++     ++F    E    
Sbjct: 891  VNKKILESLIRAGALDWTLEPRCVLFERVDLALSGASQVHKDKALGQGSLFDMTFEAPRV 950

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL-----RKMGIKGYEESVAT 989
             D+  + ++S E    R  +E+ +LG YF GHPLD  + ++      ++G+      + T
Sbjct: 951  KDEPAVPEWSKEQ---RMGDEKDLLGAYFCGHPLDSMRGVIDAEKYTRIGL------IDT 1001

Query: 990  IRGNNIR----LAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            +  + ++    +A MV S   K ++ G +   +T  +
Sbjct: 1002 LEPHELKQKHQIAGMVRSVTPKISKAGRKFAILTLED 1038


>gi|126701019|ref|YP_001089916.1| DNA polymerase III DnaE [Clostridium difficile 630]
 gi|254977018|ref|ZP_05273490.1| DNA polymerase III DnaE [Clostridium difficile QCD-66c26]
 gi|255094345|ref|ZP_05323823.1| DNA polymerase III DnaE [Clostridium difficile CIP 107932]
 gi|255102599|ref|ZP_05331576.1| DNA polymerase III DnaE [Clostridium difficile QCD-63q42]
 gi|255308424|ref|ZP_05352595.1| DNA polymerase III DnaE [Clostridium difficile ATCC 43255]
 gi|255316098|ref|ZP_05357681.1| DNA polymerase III DnaE [Clostridium difficile QCD-76w55]
 gi|255518759|ref|ZP_05386435.1| DNA polymerase III DnaE [Clostridium difficile QCD-97b34]
 gi|255651937|ref|ZP_05398839.1| DNA polymerase III DnaE [Clostridium difficile QCD-37x79]
 gi|260684901|ref|YP_003216186.1| DNA polymerase III DnaE [Clostridium difficile CD196]
 gi|260688559|ref|YP_003219693.1| DNA polymerase III DnaE [Clostridium difficile R20291]
 gi|306521687|ref|ZP_07408034.1| DNA polymerase III DnaE [Clostridium difficile QCD-32g58]
 gi|115252456|emb|CAJ70299.1| DNA polymerase III DnaE subunit alpha [Clostridium difficile]
 gi|260211064|emb|CBA66425.1| DNA polymerase III alpha subunit [Clostridium difficile CD196]
 gi|260214576|emb|CBE07133.1| DNA polymerase III alpha subunit [Clostridium difficile R20291]
          Length = 1189

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/1059 (36%), Positives = 613/1059 (57%), Gaps = 55/1059 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G   +  ++ +       +IAITD   +F  ++F + A   GI+PI
Sbjct: 5    FAHLHVHTEYSLLDGFSRVKKLIKRAKELNMSSIAITDHGCMFGVIDFYKTAIKEGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++    +  L+  +     +     +VLL    EGY+ LI++VS  Y+ +      R
Sbjct: 65   IGCEVYTAAR-GLRDKDPNYDKYQG--HLVLLAKNMEGYKNLIKIVSTSYV-EGFYYKPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRH 189
            + +  L++   +G+I L+   +G + RA    + + A++  L ++ +FG+   ++ +Q H
Sbjct: 121  VDMEELKK-HNKGIIALSACLAGDVARALMNRNYEKAKQFALDYRDIFGEENFFLEIQDH 179

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++    S +V+L+    +PLVATN+  ++++ED + HDVLM +     ++  +R R 
Sbjct: 180  NLPEQKEVNSGLVKLSKETGIPLVATNDVHYVNKEDSKIHDVLMCIQMGKTLNDPNRMRF 239

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+R EM  +F    EA++NTV+IA  C+     +   LP++   E        
Sbjct: 240  GSDEFYLKSREEMEELFPYALEAIDNTVKIADMCNVEFDFNTIHLPKYDVPEG----YTP 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E  LR     GL+ R           + +  +RL++EL+VI +M +  YFLIV DFI ++
Sbjct: 296  ETYLRELCFNGLKERYDN-------PSNEILERLNYELDVIEKMGYVEYFLIVWDFINFS 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+NNI VGPGRGS AGS+ AY L ITDIDP+++SLLFERFLNP+R+SMPD DIDFC +RR
Sbjct: 349  KENNIIVGPGRGSAAGSIVAYTLKITDIDPIKYSLLFERFLNPERISMPDIDIDFCYERR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI YV+ KYG + VAQIITFG++ AKAA+RDVGR L + Y++VD++ K IP      +
Sbjct: 409  EEVIDYVKRKYGDDHVAQIITFGTMGAKAAIRDVGRVLDIGYNKVDKVAKEIPFALGMTI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   +E    DP    ++ IS+++EG+ RHASTHAAG+VI   P+ + VP+Y+
Sbjct: 469  D-KALDTNPNLKELYDQDPETKEIINISKQIEGMLRHASTHAAGVVISKNPVDEYVPLYK 527

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV------KVDLSLI 601
                D   TQF M  +E+ GL+K DFLGL+TLT+++ +LD + +  V      K+D S +
Sbjct: 528  --HQDAITTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLDLIEKNRVIKNYTEKIDFSKM 585

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +DD + Y +L++  TLG+FQLES+GMR  ++ ++PD  EDI+A +SL+RPGP+D+I  Y
Sbjct: 586  DYDDPKVYEMLSSGNTLGVFQLESAGMRSFMKQLKPDNFEDIVAGISLFRPGPMDSIPAY 645

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K+  + +  +H  + P+++ T G ++YQEQVMQ+ + L GYS   +D++RRAM KK 
Sbjct: 646  IKNKSNPKDVTYLHEKLKPIMEVTYGCLVYQEQVMQVVRDLGGYSYGRSDLVRRAMSKKK 705

Query: 722  KEEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             + M+++++ F            I+G  +NG+ + IA  IF+ +  FA Y FNKSHAAAY
Sbjct: 706  MDVMEEERQYFIHGKFDEDGNIEIAGCIRNGVEEEIANKIFDDMIDFARYAFNKSHAAAY 765

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
             V++Y+TA++KT+YPVEF+AA +T  M N +K+ ++ ++ +   I ++PP +N     F 
Sbjct: 766  GVLAYETAYLKTYYPVEFMAALITSVMGNTDKVVEYIRECKALEIDVLPPDINKSFSKFS 825

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V  + I + LAA+K VG     +I+ E  ++  F  L D   R+D K  N+RV+ESL+  
Sbjct: 826  VEGDNIRFGLAAVKNVGVNIINNIIAERESNGLFVDLVDLVKRLDQKDTNKRVIESLIKC 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHEKGTFSDKITLEKF 943
            GA D    +R  L+   +++ +      K       ++F     + E   F    +L K 
Sbjct: 886  GAFDNISENRASLMAGYESLLESVSMDRKKNVQGQISLFDAFGDSEEDSDFQQIYSLPKR 945

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM---------GIKGYEESVATIRGNN 994
                   R   E+ VLG Y SGHPL  ++  L++           +K  EES   +   +
Sbjct: 946  QEYEERERLNLEKEVLGMYVSGHPLSQFEKELQEKTSMDNGKLNSLKEEEESYLQMNETD 1005

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +  M+V+K  K T++   + ++   +     E   FP
Sbjct: 1006 VIMGGMIVTKTIKTTKRNEIMAFIELEDLYGAIEIIVFP 1044


>gi|78777108|ref|YP_393423.1| DNA polymerase III subunit alpha [Sulfurimonas denitrificans DSM
            1251]
 gi|78497648|gb|ABB44188.1| DNA polymerase III, alpha subunit [Sulfurimonas denitrificans DSM
            1251]
          Length = 1186

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/1053 (37%), Positives = 619/1053 (58%), Gaps = 58/1053 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L N++ ++      ++A+TD  N+F A++F Q+  AAGI+PI
Sbjct: 6    FTHLHLHTEYSLLDGANKLTNLVKQVKELGMTSVAMTDHGNMFGAIDFYQQMRAAGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129
            IG +  I    ++      K  F     I L     +GY+ L+ L S+ ++  +G     
Sbjct: 66   IGMEGYIHNGGSMD-DKSSKQRF----HICLFAKNQKGYENLMYLSSKAFI--EGFYYFP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAF-FFNSSQVAEKRL---------LTFKKLFG 179
            RI  + L+   +EGLI  +    G ++      N   V    L         L +K++FG
Sbjct: 119  RINKNELRA-HSEGLICTSACLQGEVNWHLNLSNERNVKNGALGYDGAKAVALEYKEIFG 177

Query: 180  DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            D  Y+ L RH   D+ + + QV++L+   ++ +VATN++ +   ED + H+  M +  + 
Sbjct: 178  DDFYLELMRHGIGDQLFIDEQVLKLSKELDIKVVATNDTHYTFAEDAQYHEAFMCIGMNK 237

Query: 239  VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-- 295
            +    +R R +  + YLK+ ++M  +F+D+PEA+E+T EI  +C+  L++  P+ P F  
Sbjct: 238  LYDDPNRMRHSVHEFYLKSPAQMAMLFADIPEAIEHTQEIVEKCNLELKLGDPVPPNFKF 297

Query: 296  ----IEKECDDIQKEEENELRN-----KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                   +  +I   ++NE+       +   GLE RLA   +A+  H Q+YR RLDFE+N
Sbjct: 298  SAEYARNDGLEINGSDKNEIDAEYFVYRCKIGLEHRLAH--VAEEKH-QEYRDRLDFEMN 354

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI  MKF GY LIV DF++ AK+  I VGPGRGS AGS+ AY+L ITDIDP+++ LLFER
Sbjct: 355  VINSMKFPGYMLIVWDFVKVAKEKGIAVGPGRGSAAGSLVAYSLEITDIDPMKYDLLFER 414

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPD D+DF Q RR EVI YV  KYG  +VAQIITFGSL AK  +RDV R L 
Sbjct: 415  FLNPERVSMPDIDMDFMQARRGEVIDYVVEKYGRNQVAQIITFGSLLAKGVIRDVARVLD 474

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF------REARL-----ADPSVDRLLEIS 515
            MP S+ D++ KL+P++    ++L     +  F      +E +L     +D +  R+ E +
Sbjct: 475  MPLSEADKMAKLVPDELG--ITLNGRTKNGEFIAGAFQKEPKLKELIDSDANAARVWEFA 532

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            +KLEGL R++  HAAG+VI +  L +  P+Y+    D+ VTQ+++ ++E   LIKFDFLG
Sbjct: 533  KKLEGLKRNSGIHAAGVVISNEELWKKTPIYKPSGEDVFVTQYSLNYLEDVDLIKFDFLG 592

Query: 576  LKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            LKTL ++  ++  +  R  K V    I  +D + Y ++    T+G+FQ+ESSGM+   + 
Sbjct: 593  LKTLDVIDNAIKLIKFRYNKDVIWHEIDENDPKVYDVIRGGNTVGMFQIESSGMQDLNKQ 652

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            ++PD  ED+IA+++LYRPGP+++ ++  +  RK+G+EKI      ++P+LK T GVI+YQ
Sbjct: 653  LKPDSFEDLIAVLALYRPGPMESGMLKSFIERKHGREKIEYTFDSMEPILKNTYGVIVYQ 712

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQI Q + G+SL  +D++RR+MGK  K++M    + F  GA   G+    A  +F++
Sbjct: 713  EQVMQIVQTVGGFSLGYSDIIRRSMGK--KKDMSVYNDEFAKGAQSQGLDYAEASKLFDI 770

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSH+AAYA+I++QTAW+KT+YP EF+AA +T + DN +K+ ++  + ++ 
Sbjct: 771  IEKFAGYGFNKSHSAAYAMITFQTAWLKTYYPNEFMAALLTSDKDNTDKVVRYIDETKRM 830

Query: 813  NIQIMPPSVNTPCVDFK--VGDNR--IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLED 867
             I++ PP +    ++F     DNR  + + L AIKGVG      I+E  AD   F SLED
Sbjct: 831  GIELSPPDICDSQLEFSAITKDNREIVLFGLGAIKGVGEAAVLSILETRADGGEFKSLED 890

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F +R++  K+N+RV+ES++ AG  D FG+SR  LL  ++ I   A+     + N   ++F
Sbjct: 891  FVNRIEPSKVNKRVVESIIKAGGFDRFGFSRKALLDQIEKIVDTAKDASMAKKNAVGSLF 950

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              +    S ++ L            E E+  +GFY SGHPLD ++  L ++      E  
Sbjct: 951  GDDSEITSVELKLSNSPEYELKEILEFEKETIGFYISGHPLDEFRDKLDELDYTLSSELE 1010

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            +   G        +    +K ++KGS+ G V  
Sbjct: 1011 SVKDGTYAIFIGKIEEIVKKTSKKGSQFGIVNL 1043


>gi|269798464|ref|YP_003312364.1| DNA polymerase III subunit alpha [Veillonella parvula DSM 2008]
 gi|269095093|gb|ACZ25084.1| DNA polymerase III, alpha subunit [Veillonella parvula DSM 2008]
          Length = 1135

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/1015 (37%), Positives = 619/1015 (60%), Gaps = 39/1015 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +SLL+G   L +++ +     QPA+AITD  N+++A+ F ++  A G++PI
Sbjct: 4    FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY---LLDQGKQ 127
            IGC++ +  ++N     +G++    +  ++LL  T EGY+ L+++VS+     +L + + 
Sbjct: 64   IGCEVYV-TENNRFDRPEGRSR-ERLKHLILLAETMEGYRNLVKIVSKASTEGMLYRPRA 121

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
               +   +     ++G+I L+    G I +    ++ + A++ +  + + +G D  ++ +
Sbjct: 122  DRDLLRQY-----SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEI 176

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   +  + + ++++L+  + L +VA+N+  ++ +ED +A D+ + ++     ++ DR
Sbjct: 177  QNHGLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDR 236

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             +   D  YLK+  EM  +F  +P A+ENT++IA RC+         LP F      D+ 
Sbjct: 237  LKFPNDEFYLKSGDEMAELFGHIPGAIENTLKIAERCNVEFNFDEHHLPHF------DVP 290

Query: 305  KEEENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            + E ++   + V   E+ RL       G  +++ ++RLD+EL+VI  M F  YFLIV D+
Sbjct: 291  EGETSKTYLRKVCEREIPRLY------GETSEELQKRLDYELDVIGTMGFEDYFLIVWDY 344

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC
Sbjct: 345  VRYAREHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFC 404

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++R + I YV  KYG  RV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+ 
Sbjct: 405  YEKRGQAIEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNEL 464

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++L         +    ADP+V  L +  +KLEG+ R++STHAAG+VI   PL   V
Sbjct: 465  G--ITLDKALQGKELKALYEADPNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHV 522

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
            P+ ++   +  VTQ++   IE+ GL+K DFLGL+TLT++  +L  + A RG+ +DL  IP
Sbjct: 523  PV-QNANDEGFVTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIP 581

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD     LLT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +V  
Sbjct: 582  LDDKAACDLLTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVAD 641

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + +R++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK
Sbjct: 642  FIDRRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKK 701

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             +  +  Q+E FI G+ KNGI +++A  +F+LL  FA YGFNKSH+AAYA I+YQTA++K
Sbjct: 702  KESVLKAQRESFIQGSVKNGIDESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLK 761

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HY  EF+AA+MT  M N++K+  +    ++ N++++ P +N     F V D+ I + L 
Sbjct: 762  AHYFPEFMAATMTSFMQNMQKLTYYINSCKKHNVKVLGPDINYSERSFAVQDDAIRFGLG 821

Query: 841  AIKGVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK VG     R I E +    +  + DFC RVD+K +N+R+LESL+  G++D F  +R 
Sbjct: 822  GIKNVGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGSMDGFKENRN 881

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
            QLL   ++ Q      +K+      N+F    E   F     +E  S ++   + ++E+ 
Sbjct: 882  QLLHMYESAQAVGAKEQKDAAMGTMNLFGDMEEAVDFIPVPNVEDLSEDD---KLKDEKE 938

Query: 958  VLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
              GFY +GHPL  Y   L  +  +    E+     G  I    ++ +K  + T++
Sbjct: 939  YTGFYITGHPLQGYAKELEGLFELGALAENPEQYDGQTITFGGLIENKSDRMTKR 993


>gi|254525897|ref|ZP_05137949.1| putative DNA polymerase IIIalpha subunit subfamily [Prochlorococcus
            marinus str. MIT 9202]
 gi|221537321|gb|EEE39774.1| putative DNA polymerase IIIalpha subunit subfamily [Prochlorococcus
            marinus str. MIT 9202]
          Length = 1165

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1054 (37%), Positives = 622/1054 (59%), Gaps = 50/1054 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L  HS YSLL+GA  ++ I+D+ +     +IA+TD   ++  L+  +K     I+PI
Sbjct: 3    FVPLHNHSDYSLLDGASQISKIVDRASDLGMESIALTDHGVMYGVLDLVKKCKEKNIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IG ++ +       +      P P       +V+L     GY+ L++L +  +L     +
Sbjct: 63   IGNEMYV-------INGSIDDPQPKKEKRYHLVVLAKNYTGYKNLVKLTTISHLNGMRGR 115

Query: 128  SV--RICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             +  R C+  S L +  ++GLI+ T    G I +A       VAE   + +KK+F D  Y
Sbjct: 116  GIFSRPCIDKSLLSKY-SDGLIVSTACLGGEIPQAILKGRLDVAEDIAIWYKKIFADDFY 174

Query: 184  VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H    DR    +++++   H++ ++ATN++ +LS  D EAHD L+ V    ++S 
Sbjct: 175  LEIQDHGSIEDRIVNVELIKIGKKHQIKVIATNDAHYLSNMDVEAHDALLCVLTGKLISD 234

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296
            + R R T   Y+K+ +EM+ +F D      + EA+ NTVEI+++           +P+F 
Sbjct: 235  EKRLRYTGTEYIKSENEMLELFKDHIDDVSINEAVNNTVEISQKVEVFDLFGNYRMPKFP 294

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E  D      + L   +  GL  RL +    +    + Y++RL  EL +I  M F  Y
Sbjct: 295  LNEDTD----SFSLLTKLSNEGLLKRLKKNNFTE--VDESYKKRLSTELKIIKDMGFPDY 348

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL+V D+I++A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP R SMP
Sbjct: 349  FLVVWDYIKFARDNSIPVGPGRGSAAGSLVAYALQITNIDPVEHGLLFERFLNPARKSMP 408

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D DFC DRR+EVI YV N+YG ++VAQIITF  + +KA L+DV R L +PY + D+L 
Sbjct: 409  DIDTDFCIDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADKLA 468

Query: 477  KLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            KLIP     P  L  + D +     FR+  + D  V + ++++ ++EG  +    HAAG+
Sbjct: 469  KLIPVVRGKPYKLNEMIDKNSPSQEFRDKYINDNRVKKWVDLAMRIEGTNKTYGVHAAGV 528

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI   PL +LVP+ R+    + +TQ++M  IE  GL+K DFLGLK LT++ K++  + Q 
Sbjct: 529  VIASDPLDELVPLQRNNEGQI-ITQYSMDDIESLGLLKMDFLGLKNLTMIDKTISLINQS 587

Query: 593  -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             G  +++  +P +D +T+ L+      GIFQLESSGM+Q ++  +P+ +EDI ++++LYR
Sbjct: 588  TGKIINIDDLPQNDSKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALYR 647

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+D  ++  + NRKNG EK+   HP I  +L ET G+++YQEQ+M+IAQ L+GYSL +
Sbjct: 648  PGPLDAGLIPKFINRKNGNEKVDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSLGD 707

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK   EM K +  F++G+ K G+++ +A ++F+ +  FA+Y FNKSH+ AY
Sbjct: 708  ADLLRRAMGKKKVSEMVKHRNIFVNGSMKKGVNEKLANDLFDQMVLFAEYCFNKSHSTAY 767

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
              ++YQTA++K H+PV ++AA +++   + +K++++  +     I+++ PS+N   VDF 
Sbjct: 768  GAVTYQTAFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMGIEVISPSINFSGVDFT 827

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            + +N+I + L+AIK +G +  R+I+E  ++   F+SL D C R+ S  LN+R LESL+  
Sbjct: 828  IKNNQILFGLSAIKNLGDSAIRNIIENRNSFGIFESLSDLCDRLPSNVLNKRSLESLIHC 887

Query: 889  GALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK--FS 944
            GALD F    +R QLL  L+++  +A    ++R +   N+F   K  FS+   L+     
Sbjct: 888  GALDEFSNDNNRAQLLSDLEHVIDWASSRNRDRLSGQGNLF-DSKEEFSNVAFLDTQLKK 946

Query: 945  VENSSV--RFENEQRVLGFYFSGHPLDVY---KPILRKMGIKGYEESVATIRGNNIRLAA 999
            V++ S+  + + E+++LGFY S HPL        ++  + I   EE+    +   + L  
Sbjct: 947  VDDYSLIEKLKLEKQLLGFYLSDHPLKHLAKQAKLISPINISQLEETKDRTK---VSLVV 1003

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            M+   +Q  TRKG R+  V   + +   EA  FP
Sbjct: 1004 MIPDLKQITTRKGDRMAIVQLEDLSGSCEAIVFP 1037


>gi|284051053|ref|ZP_06381263.1| DNA polymerase III subunit alpha [Arthrospira platensis str. Paraca]
          Length = 1219

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/1087 (36%), Positives = 629/1087 (57%), Gaps = 80/1087 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  L  ++ +      PAIA+TD   ++ A+E  +   + GI+P
Sbjct: 2    SFVGLHIHSDYSLLDGASQLPQLVSRAVELGMPAIALTDHGVMYGAIELIKICRSKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQS 128
            IIG ++ I +  ++ +  +G   +  V    +L    +GY+ L++L +  +L   QGK  
Sbjct: 62   IIGNEMYI-LNADVTVQQRGIKKYHQV----VLAKNTQGYKNLVKLTTISHLKGFQGKGI 116

Query: 129  -VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              R C++  L E   EGLI+ +    G + +A       +A + +  +K++FGD  Y+ +
Sbjct: 117  FARPCINKELLEEYHEGLIVTSACLGGEVPQAILQRRMDIARQTVEWYKRVFGDDYYLEI 176

Query: 187  QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    DR     +VQLA   E+ +VATN+S F+S  D EAHD L+ +    ++++ +R
Sbjct: 177  QDHGSPEDRIVNVALVQLAREFEVKIVATNDSHFISCNDVEAHDALLCINTQKLITEDNR 236

Query: 246  PRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCS-FILQVHAPILPRFIEK 298
             R +   YLK+  EM+ +F D LP     EA+ NT+E+A +   +   +  P +P +   
Sbjct: 237  LRYSGTEYLKSAEEMMQLFRDHLPDEVIKEAIANTLEVAEKVEPYTGILGEPRIPDYPIP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRL-AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                     +  L   A  GL+ RL AQG   +      YR+RL++EL ++ +M F+ YF
Sbjct: 297  P----NHTADTYLEEIAWEGLKKRLNAQG---RSEIKPVYRERLEYELKMMQKMGFATYF 349

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+V D+I+ A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD
Sbjct: 350  LVVWDYIKHARDNHIPVGPGRGSAAGSLVAYALQITNIDPVHHGLLFERFLNPERKSMPD 409

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D DFC DRRDE+I+YV +KYG E+VAQIITF  + +KA L+DV R L +PYS+ D++ K
Sbjct: 410  IDTDFCIDRRDEMIKYVTSKYGEEKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAK 469

Query: 478  LIPNDPAHPVSLQAIADDS----RFREA--------------RLADPSVDRLLEISQKLE 519
            +IP     P  L+ +  D      F++A               +   +V + ++++ ++E
Sbjct: 470  MIPVSRGKPTKLKVMISDQSPSPEFKQAYDNDFVPIKNDAGEEVGTIAVRQWVDMAIRIE 529

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G  +    HAAG+VI  +PL ++VP+ R+    + +TQ+ M+ IE  GL+K DFLGLK L
Sbjct: 530  GTNKTFGVHAAGVVISKQPLDEIVPLQRNNDGSV-ITQYFMEDIESLGLLKMDFLGLKNL 588

Query: 580  TLLQKSLDFLAQRG--------------------VKVDLSLIPFDDHETYHLLTTKGTLG 619
            T++Q++L++++Q                       K  +  +P D  +TY +L      G
Sbjct: 589  TIIQRTLNYISQNHHLDIDPYDLAANERKAMDILAKGSVKKMPEDVAKTYKILERGDLEG 648

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPL 677
            +FQLESSGMRQ ++ ++P  IEDI ++++LYRPGP+D  ++  + NRK+ +E I   H L
Sbjct: 649  LFQLESSGMRQIVKDLKPSSIEDISSILALYRPGPLDAGLIPQFINRKHKREPIRYEHKL 708

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++P+L ET G+++YQEQ+M++AQ L+GYSL +AD+LRRAMGKK   EM K +E FI GA+
Sbjct: 709  LEPILNETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKASEMQKHRETFIDGAT 768

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            +NG+ + IA ++F+ + KFA+Y FNKSH+ AY  I+YQTA++K +YP E++AA +T    
Sbjct: 769  RNGVPQNIAEHLFDQMVKFAEYCFNKSHSTAYGYITYQTAYLKANYPTEYMAALLTENSG 828

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
            N +K+K + +  +   I ++PP +N   VDF   +NRI + L+AIK VG     H++   
Sbjct: 829  NTDKVKAYIESCKHLGIDVVPPDINRSNVDFTPIENRIVFGLSAIKNVGDGAIEHLLSVR 888

Query: 858  AD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
             +  PF SL D C R++ + +N R LESL+ +GA D    +R Q ++ L+ +  +AQ   
Sbjct: 889  EEGGPFRSLADLCDRINLQMVNSRALESLIKSGAFDSLHANRKQSIEYLNIVIPWAQDRA 948

Query: 917  KNRTNKHENIF------AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            KNR     N+F        E  + S + T  K        + + E+ +LGFY S HPL  
Sbjct: 949  KNREIGQTNLFDLVNYANTESNSPSGEPTFPKSDDYAPKDKLQFEKELLGFYVSDHPLKS 1008

Query: 971  YKPILRKMGIKGYEESVATIRGNN----IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
                L   G+     +V  +        +++AA +++ +   T+KG R+ ++   +   +
Sbjct: 1009 ----LLDSGVLPDNVTVDKLSEQKSKAAVKVAATLINIKPHLTKKGDRMAFLLLEDLTGQ 1064

Query: 1027 YEANFFP 1033
             +A  FP
Sbjct: 1065 IDAVVFP 1071


>gi|37523503|ref|NP_926880.1| DNA polymerase III subunit alpha [Gloeobacter violaceus PCC 7421]
 gi|35214507|dbj|BAC91875.1| DNA polymerase III alpha subunit [Gloeobacter violaceus PCC 7421]
          Length = 1159

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1057 (36%), Positives = 609/1057 (57%), Gaps = 57/1057 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V+L  HS YSLL+GA  + +++++    + PAIAITD   ++ A+E  +K  AAG++PI
Sbjct: 3    YVNLHTHSDYSLLDGASQVPDLIERAKGLEMPAIAITDHGVMYGAIELIKKCRAAGLKPI 62

Query: 71   IGCQ---LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGK 126
            +G +   ++ D++D  +   +           +LL     GY+ L++LV+  +L   QGK
Sbjct: 63   VGTEGYVINGDIRDKSRRYRRYHQ--------ILLAKNLTGYKNLVKLVTISHLDGVQGK 114

Query: 127  QSV-RICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                R C++    +   EG+I  +    G I +       + A +    +K LFGD  Y+
Sbjct: 115  GIFSRPCMNKEMLVQYHEGIICTSACLGGEIPQLILAGQFEQARRTTQWYKDLFGDDFYL 174

Query: 185  NLQRHRGYDRYRESQVVQLAYTH-----ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             +Q H      RE +VV +A  H      + ++ATN+S F S ED +AHD L+ +    +
Sbjct: 175  EIQDH----GQREDRVVNVAVVHLGRELGIKVIATNDSHFTSCEDVDAHDALLCIQTGKL 230

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQ--VHAPI 291
            V +++R R T   +LK+  +M  +F D      + +AL  T+EIA +     +  +    
Sbjct: 231  VVEENRMRYTGTEFLKSAEQMAGMFRDHLSDEVIAQALTTTLEIAEKVEKYDRELLGDSR 290

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            LPRF            E+ L      G+  R           A DYR+RL +EL +I +M
Sbjct: 291  LPRFPIPHG----HTAESYLEQVTWEGMRERFGSEI------APDYRERLKYELGIIEQM 340

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F+ YFL+V D+I++A+ + I VGPGRGS AGS+ AYAL IT+IDP+R++LLFERFLNP+
Sbjct: 341  GFATYFLVVWDYIKYARDHGIAVGPGRGSAAGSLVAYALRITNIDPVRYNLLFERFLNPE 400

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R SMPD D DFC +RRDE+IRYV  KYG + VAQIITF  L +KA L+DV R L + YS+
Sbjct: 401  RKSMPDIDTDFCIERRDELIRYVTEKYGEQYVAQIITFNRLTSKAVLKDVARVLDISYSE 460

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHAST 527
             D+L KLIP     PV L+ +  +      F+++   D  V + +E++ ++EG  +    
Sbjct: 461  ADKLAKLIPVVRGKPVPLKKMISEETPAPEFKQSYEGDERVRKWVELAMRIEGTNKTFGV 520

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HAAG+VI   PL +LVP+ R+    + +TQ+ M+ I   GL+K DFLGL+ LT++ ++ +
Sbjct: 521  HAAGVVISSVPLDELVPLQRNNDGQV-ITQYYMEDIADLGLLKMDFLGLRNLTMIHRAQE 579

Query: 588  FLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             + + RGV++DL  +P +D  TY LL      GIFQLESSGM+  +  ++P  IEDI ++
Sbjct: 580  LIERYRGVRIDLDNLPLEDSGTYALLGKADLEGIFQLESSGMKAVVRDLRPSNIEDISSI 639

Query: 647  VSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ++LYRPGP+D  ++  + NRK+G++KI  +HPL++P+LKET GV+ YQEQ+M++AQ L G
Sbjct: 640  LALYRPGPLDAGLIPEFINRKHGRKKIEYLHPLLEPILKETYGVLCYQEQIMKVAQELGG 699

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            Y+L +AD+LRRAMGKK +EEM+K +  F+ G++KNG+   +A  +FE +  FA+Y FNKS
Sbjct: 700  YTLGQADLLRRAMGKKKREEMEKHRSIFVDGSAKNGVPSRVADELFEQMVVFAEYCFNKS 759

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAY  +++QTA++K HYPVE++AA ++    + +K++K+        I+I PP +N  
Sbjct: 760  HSAAYGYVTFQTAYLKAHYPVEYMAALLSSVKGDQDKVQKYIASCMGMGIEIEPPDINRS 819

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLE 883
              DF   +  I + L A+K VG    + +++A  +  PF +L + C RVD + +N+R LE
Sbjct: 820  GFDFTPQEKSILFGLGAVKNVGEGAIQALLDARDSQGPFKNLANLCDRVDMRVINKRALE 879

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            SL+ AGA D F  +R QL+  ++ +  +AQ   ++R     N+F    G      T  + 
Sbjct: 880  SLIKAGAFDAFSSNRGQLIADMEKVVDWAQDRARDRALGQFNLFDALSGGGDRNPTGYQS 939

Query: 944  SVENSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            +             + + E+ +LGFY S HPL   +   R +      +       + + 
Sbjct: 940  APSAPPTPDLPPADKLKFERELLGFYISDHPLKAVRESARLLAPVNLADLADCRAESTVS 999

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              A+V   +   T+KG R+  V   +     EA  FP
Sbjct: 1000 AIALVREVKNVVTKKGDRMAIVQIEDLTGSTEAVVFP 1036


>gi|116327113|ref|YP_796833.1| DNA-directed DNA polymerase, alpha subunit [Leptospira borgpetersenii
            serovar Hardjo-bovis L550]
 gi|116119857|gb|ABJ77900.1| DNA-directed DNA polymerase, alpha subunit [Leptospira borgpetersenii
            serovar Hardjo-bovis L550]
          Length = 1176

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/1042 (37%), Positives = 611/1042 (58%), Gaps = 44/1042 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H++YS+L+GA+ +  ++  +  +   ++A+TD  N+F A+EF  +A   GI+PI
Sbjct: 8    FAHLHLHTNYSMLDGAIRIKELMQHVKENGMSSVAMTDHGNMFGAVEFYNEATKQGIKPI 67

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   +  + T   K    +   ++LL    EGY+ LI L S+ Y     K++ R
Sbjct: 68   IGSEFYVS-PNRKQETEMVKIADGSAYHLILLAKNEEGYKNLIRLSSKSYTEGFYKKA-R 125

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN----SSQVAEKRLLTFKKLFGDRLYVNL 186
            I    L +    GL+ LT   +G ++R         S Q+A K    F+K   +  Y+ +
Sbjct: 126  IDYDLLAQ-HNGGLVCLTACLAGEVNRKILEGKIDESFQLAGKLNEIFRK---EDFYMEI 181

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++     Q+        +PLV TN+S FL ++D EA D+L+ +     ++    
Sbjct: 182  QNHGIPEQMTVAKQIYDFGKRTGIPLVVTNDSHFLKKDDQEAQDILLRIGMQKRITDPME 241

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + Y+K+  EM  +F ++PEA  NT+EI+ +    LQ    +LP F   E  D   
Sbjct: 242  FGFNGEFYVKSPDEMARVFPEIPEAFYNTLEISNKVDLKLQFGNYLLPEFEVPEGYD--- 298

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                     A + LE  + +G I + Y   + + + R+ FELN I  MKF+GYFLIV D+
Sbjct: 299  ---------ADSYLEKLIWEG-IGRKYPNLSPEIKDRVVFELNTIKNMKFAGYFLIVQDY 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I +AK+N IPVGPGRGS AGS+ AYAL IT+++PL+ +LLFERFLNPDR  MPD D DFC
Sbjct: 349  INYAKRNGIPVGPGRGSAAGSIVAYALGITNVEPLQHNLLFERFLNPDRKDMPDIDTDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EVI Y++ +YG E+V QIITF SL AKAAL+DV R L +P+ + + + K  PN  
Sbjct: 409  VERREEVINYIRRRYGEEKVGQIITFNSLAAKAALKDVARVLNLPFGEANEMTKAFPNKL 468

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A+   S  +     D    ++  I+Q+LEG YR    HAAG+VI   PL ++V
Sbjct: 469  GMSIA-EALTTSSELKNFSEKDDINHKIFAIAQRLEGNYRQPGRHAAGVVISPYPLEEVV 527

Query: 544  PMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597
            P+      + P     VTQ++   +E  GLIK D LGLK LT L  ++  +  +RGV++D
Sbjct: 528  PLSTVAEKERPGSRSIVTQYDKNNLESIGLIKMDILGLKNLTTLDYAIKLIERRRGVRID 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  IP++D  TY LL    TLGIFQLES+G+   +   Q +  ++I+AL++LYRPGP+  
Sbjct: 588  LDEIPYNDANTYALLRKANTLGIFQLESTGITDLVAKSQVNNFDEIVALIALYRPGPMGE 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             ++  Y +RK+G++++   HP  +P+LKET GV +YQEQVM I++++ G+S+ ++DVLR+
Sbjct: 648  GMLDEYLDRKSGRKQVTYPHPSCEPILKETFGVPVYQEQVMSISRVVGGFSVGDSDVLRK 707

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AM KK  + M+K K +F+ GA K GI + +A ++FE L +F  YGFNKSH+ AYA+I+YQ
Sbjct: 708  AMAKKKADLMEKLKYQFVEGAVKQGIQEKVAKDLFEQLERFGGYGFNKSHSVAYAIITYQ 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834
            TA++K +Y +E+L A +  +      I K+  +AR+  I+I+ P V+     F V D+  
Sbjct: 768  TAYLKANYTIEYLTALLASDHGKTTDIVKYINNAREMGIRILNPDVSESQASFNVIDDAT 827

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKP--FDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            I + L+A+KGVG T A  I+EA  DK   F +L+DF   +D++ +N++V E+L+ AGALD
Sbjct: 828  IRFGLSAMKGVGETAANSIIEAR-DKAGNFKTLQDFALNIDTRLINKKVFEALIQAGALD 886

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEKGTFSDKITLEKFSVE-NSSV 950
             FGY+R  L +S+D+I  +AQ  E+ RTN+ + ++F   + +F+  + L K ++E     
Sbjct: 887  SFGYTRKCLFESVDSILTFAQR-EQERTNEGQFSLFGVGESSFT--LNLPKDALEWEIDE 943

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            +   E+ + G Y SGHPLD Y+  L+ +     E+      G+ + +A ++ SK  K ++
Sbjct: 944  KLRREKAIAGLYLSGHPLDKYEKQLKSLRTIPIEKFDNLKSGSKVEVAGIISSKNIKLSK 1003

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +          +   E E   F
Sbjct: 1004 RNEEFANFKLEDRTGEIECVAF 1025


>gi|159903240|ref|YP_001550584.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT
            9211]
 gi|159888416|gb|ABX08630.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT
            9211]
          Length = 1171

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1057 (38%), Positives = 618/1057 (58%), Gaps = 51/1057 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L  HS YSLL+GA  L  ++ +  A   PAIA+TD   ++ A+E  +   + GI+PI
Sbjct: 3    FVPLHNHSDYSLLDGASQLPAMVSRAKALGFPAIALTDHGVMYGAIELLKLCKSEGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVP---SIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IG ++ +       +    + P P       +V+L     GY+ L++L +  +L     +
Sbjct: 63   IGNEMYV-------VNGSIEDPQPKKERRYHLVVLAKNDVGYRNLVKLTTISHLNGMRGR 115

Query: 128  SV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +  R C+   L E   EGLI+ T    G I +A   +   VA+     +KK+FGD  Y+
Sbjct: 116  GIFSRACIDKQLLETYKEGLIISTACLGGEIPQAILRDRIDVAKDVASWYKKVFGDDFYL 175

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +Q H    DR   + + ++A    + L+ATN++ +L+++D EAHD L+ V    ++S++
Sbjct: 176  EIQDHGSVEDRIVNTGICRIAKELNIELIATNDAHYLTKDDVEAHDALLCVLTGKLISEE 235

Query: 244  DRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIE 297
             R R T   YLK+  EM  +FSD      + EA+ NTV ++ +      +    +P+F  
Sbjct: 236  KRLRYTGTEYLKSEEEMGKLFSDHIESNIIQEAINNTVTVSEKVEEYNILGTYKMPQFPV 295

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             +      +  + LR  +  GL  RL   ++        Y  RL+ E+ +I +M F  YF
Sbjct: 296  PD----GGQSTDYLRKVSQDGLMTRLKLESLE--MIENKYINRLNSEIKIIEQMGFPDYF 349

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+V D+I++A++N+IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP+R SMPD
Sbjct: 350  LVVWDYIRFARENHIPVGPGRGSAAGSLVAYSLGITNIDPVTNGLLFERFLNPERKSMPD 409

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PYS  DRL K
Sbjct: 410  IDTDFCIERRGEVIDYVTKRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYSDADRLAK 469

Query: 478  LIPNDPAHPVSL-QAIADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            LIP     P  L Q I D++    FRE    DP V + L+++ ++EG  +    HAAG+V
Sbjct: 470  LIPVVRGKPAKLSQMIGDNTPSKDFREKYQNDPLVKKWLDMAIRIEGTNKTFGVHAAGVV 529

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR- 592
            I   PL  LVP+ R+    + +TQ+ M+ IE  GL+K DFLGLK LT+++K++  +    
Sbjct: 530  IASDPLDNLVPLQRNNDGQI-ITQYFMEDIESLGLLKMDFLGLKNLTMIEKAVTLVEDSL 588

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G K+DL  +  DD +TY LL+     GIFQLES+GMRQ ++ ++P  +EDI ++++LYRP
Sbjct: 589  GEKLDLDQLNMDDTKTYELLSKGDLEGIFQLESTGMRQIVKDLRPSSLEDISSILALYRP 648

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+D  ++  + NRK+GKE+I   H  + P+L ET G+++YQEQ+M+IAQ L+GYSL +A
Sbjct: 649  GPLDAGLIPKFINRKHGKEQIDFPHASLAPILGETYGIMLYQEQIMKIAQELAGYSLGQA 708

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK   EM+K +  F+ GASKNGI+  IA  +FE +  FA+Y FNKSH+ AY 
Sbjct: 709  DLLRRAMGKKKVAEMEKHRNFFLEGASKNGINSNIANELFEQMLLFAEYCFNKSHSTAYG 768

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             +++QTA++K HYPV ++AA +T+   + +K++++  +     I++MPP VN+  +DF  
Sbjct: 769  AVTFQTAYLKAHYPVAYMAALLTVNAGSSDKVQRYISNCNSMGIEVMPPDVNSSGIDFTP 828

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +N I + ++A+K +G    R ++++   D  F SL D C R+    LNRR LESL+ +G
Sbjct: 829  NENHILFGMSAVKNLGDGAIRELIKSREEDGSFISLADLCDRIPPNTLNRRGLESLIHSG 888

Query: 890  ALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHEKGTFSDKITLEK 942
            ALD F    +R QLL  LD I ++A    ++R +   N+F     + E  T +   T  K
Sbjct: 889  ALDSFDKKANRAQLLADLDLIIEWATSRARDRISGQGNLFDLASSSSENQTSNSLHTAPK 948

Query: 943  ---FSVENSSVRFENEQRVLGFYFSGHPL-DVYKP--ILRKMGIKGYEESVATIRGNNIR 996
                S  + + +   E+ ++GFY S HPL  + +P  ++  + +   E+       + + 
Sbjct: 949  AAPVSDYSPTEKLRLEKELIGFYLSDHPLKQLSEPAKLIAPISLGTLEDQRDK---SKVS 1005

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + AM+   +   TRKG ++  +   +     EA  FP
Sbjct: 1006 VIAMINDMRVVTTRKGDKMAILQIEDLTGSCEAVVFP 1042


>gi|145640823|ref|ZP_01796405.1| DNA polymerase III subunit alpha [Haemophilus influenzae R3021]
 gi|145274337|gb|EDK14201.1| DNA polymerase III subunit alpha [Haemophilus influenzae 22.4-21]
          Length = 868

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/880 (42%), Positives = 541/880 (61%), Gaps = 38/880 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1   MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +G++PIIG  + +      K    G   F     + LL    EGY+ +  L+S+ Y   +
Sbjct: 61  SGMKPIIGADVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QR 108

Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
           G   +  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y
Sbjct: 109 GYNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFY 167

Query: 184 VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           + L R    +  R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +  
Sbjct: 168 LALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDD 227

Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +  
Sbjct: 228 PKRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286

Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                 E+ L  K+  GLE RLA        +      Y +RL  EL+VI +M F GYFL
Sbjct: 287 ----STEDFLVQKSKEGLEERLAFLFSDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 343 IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 403 DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
           IP DP   ++ +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    
Sbjct: 463 IPPDPGMTLA-KAFEAEPQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTL 521

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594
           ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R V    
Sbjct: 522 ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGK 581

Query: 595 -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPG
Sbjct: 582 PRVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641

Query: 654 PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
           P+ + +V N  +RK+GKE++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+
Sbjct: 642 PLQSGMVDNFIDRKHGKEEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYT 701

Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
           L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+
Sbjct: 702 LGGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761

Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
           AAYA++SYQT W+KTH+P EF+AA MT E+DN +KI     +  +  +++ PP +N    
Sbjct: 762 AAYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821

Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
            F V +   I Y + AIKGVG      ++ A  +  F  +
Sbjct: 822 HFSVSEQGEIVYGIGAIKGVGEGPIEALVTARNEGGFSKI 861


>gi|57167730|ref|ZP_00366870.1| DNA polymerase III, alpha subunit [Campylobacter coli RM2228]
 gi|57020852|gb|EAL57516.1| DNA polymerase III, alpha subunit [Campylobacter coli RM2228]
          Length = 1200

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/1003 (39%), Positives = 598/1003 (59%), Gaps = 58/1003 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   + G++PI
Sbjct: 4   FTHLHLHTEYSLLDGANKLKELAKTLKEQGATSVAMTDHGNMFGAIDFYQTMRSEGLKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129
           IG +  +   +++      +  F     + L      GYQ L+ L S+ Y+  +G     
Sbjct: 64  IGLEAYLHNHEDIS-DKSSRQRF----HLCLYAKNEVGYQNLMYLSSQSYI--KGLYYYP 116

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS----------QVAEKRLLTFKKLFG 179
           RI    L+E  +EGLI  +    G ++     +S           + A++  L +KK+FG
Sbjct: 117 RINKKLLEE-HSEGLICSSACLQGEVNWHLNIHSERNVRFGAKGYEAAKEAALWYKKVFG 175

Query: 180 DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
           D  Y  + RH  G  R  +  +++L+    + ++ATN++ +  +E   AH+V M +A   
Sbjct: 176 DDFYFEIMRHGIGDQRAIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGK 235

Query: 239 VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-- 295
            ++  DR R +  + Y+K+ ++M  +F+D+PEA+ENT EIA +C+  L +  P  P F  
Sbjct: 236 KLNDPDRLRHSVHEFYVKSPAQMSELFADIPEAIENTQEIANKCNLELNLGNPTPPNFKF 295

Query: 296 ---IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDF 343
                KE +    EE  E    N  V        GLE RL    I+K    ++Y+ RL+ 
Sbjct: 296 TREYAKEYNISLPEEGKEFSFDNDDVVFDELCKKGLEERLKFVDISK---HEEYKTRLEV 352

Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
           E+N+I +MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ AY+L ITD+DP+ +SLL
Sbjct: 353 EINIIKKMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVAYSLKITDLDPIPYSLL 412

Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           FERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L A+  +RDV R
Sbjct: 413 FERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLARGVIRDVAR 472

Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLY 522
              M     D L KLIP +    ++L A  + + + +E     P    + E ++ LEGL 
Sbjct: 473 VCDMSIPDADELAKLIPEEL--KITLDAAYEKEPKIKEFIERHPKGPEVWEYAKALEGLN 530

Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLT 580
           R+A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT
Sbjct: 531 RNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLT 590

Query: 581 LLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
           L+  ++  + +R  K +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+ 
Sbjct: 591 LINNAIKLIKKRYNKDIIWEAIDVNDAKVYKTIQSGNTLGIFQIESGGMQNLNARLKPER 650

Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
            EDIIA+++LYRPGP+++ ++  + +RK+G +KI      ++ +L+ T G+I+YQEQVMQ
Sbjct: 651 FEDIIAVLALYRPGPMESGMLDDFIDRKHGLKKIEYPFDTLESVLEPTYGIIVYQEQVMQ 710

Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
           I Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A  ++EL+ KFA
Sbjct: 711 IVQIIGGFSLGGADVVRRAMGKKDPEKMKKLKSEFADGAEKQGYDRVKAEELWELIVKFA 770

Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++
Sbjct: 771 GYGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLL 830

Query: 818 PPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
           PPSVN    +F       G + I Y L AIK VG     +++EA     F +++DF SR+
Sbjct: 831 PPSVNKAIREFSAVEQEDGKDAIVYGLGAIKSVGIPAVENLLEARERGEFKNIDDFLSRI 890

Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
           +  K+N+R LESL+ AGA D FGY+R  L  ++DN+ + ++ +   R N   ++F  ++ 
Sbjct: 891 EPTKINKRTLESLIKAGAFDEFGYTRKCLFDNMDNLTEGSKKMADARKNAASSLFGEDEL 950

Query: 933 TFSDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
           T   ++ +    E+F V     + E E+ +LG Y SGHPLD +
Sbjct: 951 TVGLQVNIVAKNEEFEVME---KLEFEKEILGIYVSGHPLDRF 990


>gi|46446023|ref|YP_007388.1| DNA polymerase III subunit alpha [Candidatus Protochlamydia
            amoebophila UWE25]
 gi|46399664|emb|CAF23113.1| putative DNA polymerase III, alpha chain [Candidatus Protochlamydia
            amoebophila UWE25]
          Length = 1252

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/1032 (38%), Positives = 600/1032 (58%), Gaps = 68/1032 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL+ HS YS+L+ + S++++  +   +   +IA+TD  NLF  ++F +      +
Sbjct: 3    SSPFVHLRTHSQYSILDASASISDLSQRAFQEGMSSIALTDHGNLFGIVDFYKACKEVKV 62

Query: 68   QPIIGCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            + IIGC+L +     L+ T   G+        + LL     GYQ L +L S  Y+  +G 
Sbjct: 63   KSIIGCELYVAPGSRLEKTKVYGQR---AAYHLTLLAQNNRGYQNLAKLSSSGYI--EGF 117

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                     L    +EGLI L+G     +       + +  +  LL ++++F DR Y++L
Sbjct: 118  YYYPRVDHDLLRKHSEGLICLSGSLGTLLAHEILQGNVKSIQDHLLWYQEVFKDRFYLDL 177

Query: 187  QRHRGYDR-------YRESQVVQ------------------LAYTHELPLVATNNSLFLS 221
            QRH            Y+ES +VQ                  L+  H +PLVATN+  ++ 
Sbjct: 178  QRHEMAAEDIQQDGLYQESWLVQQYQDYFNRQQKVNEALIALSREHHIPLVATNDVHYID 237

Query: 222  EEDYEAHDVLMAV--AHSTVVSQKD------------RPRVTPDH--YLKNRSEMVSIFS 265
             ED+ AH++L+ +       + +KD            + +  P H  Y K+  +M  +F 
Sbjct: 238  REDWRAHEILLNIQSGEPCEIWEKDAYGTPKFRIPNPKRQTYPSHEYYFKSSQQMEQLFK 297

Query: 266  DLPEALENTVEIARRCSFILQV---HAPI-LPRFIEK---ECDDIQKEEENELRNKAVAG 318
            D+PEA+ NT +IA +C   +     H P+ LP  +E    E D+ +KE EN L      G
Sbjct: 298  DVPEAIINTQKIAEQCLVEIDFKTKHYPVYLPPSLENRPFEKDEQKKEVENYLWKLCEEG 357

Query: 319  LEVRLAQGAIAKG---YHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            +  R     +AK    Y  ++     R+RL++E+++I     S Y LIV DFI WAK+N 
Sbjct: 358  ISNRYTIERLAKVQEIYPDRNPLDVVRERLNYEMSIIVPKGMSDYLLIVWDFINWAKRNG 417

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            IP+GPGRGSGAGS+  Y + ITDI+PLRF L FERF+NP+R+S PD D+D C DRR EVI
Sbjct: 418  IPMGPGRGSGAGSIVLYLIGITDIEPLRFHLFFERFINPERISYPDIDVDICMDRRGEVI 477

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             Y   KYG + VAQIITFG+++AK AL+DVGR L +P S+V+ + KL+P D    +  +A
Sbjct: 478  AYTLQKYGKDNVAQIITFGTMKAKMALKDVGRVLSVPLSKVNEIAKLVPEDLNITLD-KA 536

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
            +  D   R+    D  V RL+++++KLEG  R+   HAAGI+I   PL+ L+P+     S
Sbjct: 537  LEKDQDLRQLYENDEEVGRLIDLAKKLEGSIRNTGIHAAGIIISGVPLTNLIPICNSKDS 596

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYH 610
            D+PVTQF+MK +E  G++K DFLGLKTLT +Q  ++ + A  G ++D   +P DD  T+ 
Sbjct: 597  DIPVTQFSMKPVEAVGMLKVDFLGLKTLTAIQICVNAVKASTGKEIDWINLPLDDKPTFD 656

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL    TLGIFQLES GM+     +  D  E+IIA+ +LYRPGP+D I  + NRK+G+E 
Sbjct: 657  LLNQGKTLGIFQLESGGMQDLARQLHLDRFEEIIAVGALYRPGPMDMIPSFINRKHGREA 716

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I + HP +  +L ET G+++YQEQVMQIA  L+ +SL E DVLRRAMGKK  ++M KQ+E
Sbjct: 717  IENDHPWMKDILAETYGIMVYQEQVMQIASKLANFSLGEGDVLRRAMGKKDMDQMAKQRE 776

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            +F  GA +N I    ++ IF+ + KFA YGFNKSHAAAY  +SY TA++K +YP E++A+
Sbjct: 777  KFRLGALENQIDNQTSMLIFDKMEKFAAYGFNKSHAAAYGYLSYVTAYLKANYPGEWMAS 836

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             MT + D++ K+ KF ++ +  NI ++PP +N     F+     I +++  IKGVG    
Sbjct: 837  LMTCDRDDLSKVAKFIRECQSMNIPMLPPDINEAGEIFQATKQGIRFAMTGIKGVGAGVV 896

Query: 851  RHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              I++    + PF +  +F  R+D+KK+ ++V+ESLV AG+ D  G++R  L+ S+D + 
Sbjct: 897  EAIVQERQKRGPFKNFYEFFKRIDTKKVGKKVVESLVEAGSFDFTGWARDALVMSIDPMY 956

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR---FENEQRVLGFYFSGH 966
            + +   +K +     ++FA      +++   +   V+N + R      E+ +LGF+ +GH
Sbjct: 957  ESSSKEQKEQAMGFMSLFAKMDDEMTNQFR-KPPEVKNKTSRQDLLRKEKALLGFFLTGH 1015

Query: 967  PLDVYKPILRKM 978
            P+D YK IL+++
Sbjct: 1016 PMDEYKDILQRL 1027


>gi|255657348|ref|ZP_05402757.1| DNA polymerase III DnaE [Clostridium difficile QCD-23m63]
 gi|296451837|ref|ZP_06893556.1| DNA-directed DNA polymerase III alpha subunit [Clostridium difficile
            NAP08]
 gi|296879767|ref|ZP_06903741.1| DNA-directed DNA polymerase III alpha subunit [Clostridium difficile
            NAP07]
 gi|296259316|gb|EFH06192.1| DNA-directed DNA polymerase III alpha subunit [Clostridium difficile
            NAP08]
 gi|296429238|gb|EFH15111.1| DNA-directed DNA polymerase III alpha subunit [Clostridium difficile
            NAP07]
          Length = 1189

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/1059 (36%), Positives = 612/1059 (57%), Gaps = 55/1059 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G   +  ++ +       +IAITD   +F  ++F + A   GI+PI
Sbjct: 5    FAHLHVHTEYSLLDGFSRVKKLIKRAKELNMSSIAITDHGCMFGVIDFYKTAIKEGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++    +  L+  +     +     +VLL    EGY+ LI++VS  Y+ +      R
Sbjct: 65   IGCEVYTAAR-GLRDKDPNYDKYQG--HLVLLAKNMEGYKNLIKIVSTSYV-EGFYYKPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRH 189
            + +  L++   +G+I L+   +G + RA    + + A++    ++ +FG+   ++ +Q H
Sbjct: 121  VDMEELKK-HNKGIIALSACLAGDVARALMNRNYEKAKQFAFDYRDIFGEENFFLEIQDH 179

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++    S +V+L+    +PLVATN+  ++++ED + HDVLM +     ++  +R R 
Sbjct: 180  NLPEQKEVNSGLVKLSKETGIPLVATNDVHYVNKEDSKIHDVLMCIQMGKTLNDPNRMRF 239

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+R EM  +F    EA++NTV+IA  C+     +   LP++   E        
Sbjct: 240  GSDEFYLKSREEMEELFPYALEAIDNTVKIADMCNVEFDFNTIHLPKYDVPEG----YTP 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E  LR     GL+ R           + +  +RL++EL+VI +M +  YFLIV DFI ++
Sbjct: 296  ETYLRELCFNGLKERYDN-------PSDEILERLNYELDVIEKMGYVEYFLIVWDFINFS 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+NNI VGPGRGS AGS+ AY L ITDIDP+++SLLFERFLNP+R+SMPD DIDFC +RR
Sbjct: 349  KENNIIVGPGRGSAAGSIVAYTLKITDIDPIKYSLLFERFLNPERISMPDIDIDFCYERR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI YV+ KYG + VAQIITFG++ AKAA+RDVGR L + Y++VD++ K IP      +
Sbjct: 409  EEVIDYVKRKYGDDHVAQIITFGTMGAKAAIRDVGRVLDIGYNKVDKIAKEIPFALGMTI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   +E    DP    ++ IS+++EG+ RHASTHAAG+VI   P+ + VP+Y+
Sbjct: 469  D-KALDTNPNLKELYDQDPETKEIINISKQIEGMLRHASTHAAGVVISKNPVDEYVPLYK 527

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV------KVDLSLI 601
                D   TQF M  +E+ GL+K DFLGL+TLT+++ +LD + +  V      K+D S +
Sbjct: 528  --HQDAITTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLDLIEKNRVIKNYTEKIDFSKM 585

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +DD + Y +L++  TLG+FQLES+GMR  ++ ++PD  EDI+A +SL+RPGP+D+I  Y
Sbjct: 586  DYDDPKVYEMLSSGNTLGVFQLESAGMRSFMKQLKPDNFEDIVAGISLFRPGPMDSIPAY 645

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K+  + +  +H  + P+++ T G ++YQEQVMQ+ + L GYS   +D++RRAM KK 
Sbjct: 646  IKNKSNPKDVTYLHEKLKPIMEVTYGCLVYQEQVMQVVRDLGGYSYGRSDLVRRAMSKKK 705

Query: 722  KEEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             + M+++++ F            I+G  +NG+ + IA  IF+ +  FA Y FNKSHAAAY
Sbjct: 706  MDVMEEERQYFIHGKFDEDGNIEIAGCIRNGVEEEIANKIFDDMIDFARYAFNKSHAAAY 765

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
             V++Y+TA++KT+YPVEF+AA +T  M N +K+ ++ ++ +   I ++PP +N     F 
Sbjct: 766  GVLAYETAYLKTYYPVEFMAALITSVMGNTDKVVEYIRECKALEIDVLPPDINKSFSKFS 825

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V  + I + LAA+K VG     +I+ E  ++  F  L D   R+D K  N+RV+ESL+  
Sbjct: 826  VEGDNIRFGLAAVKNVGVNIINNIIAERESNGLFVDLVDLVKRLDQKDTNKRVIESLIKC 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHEKGTFSDKITLEKF 943
            GA D    +R  L+   +++ +      K       ++F     + E   F    +L K 
Sbjct: 886  GAFDNISENRASLMAGYESLLESVSMDRKKNVQGQISLFDAFGDSEEDSDFQQIYSLPKR 945

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM---------GIKGYEESVATIRGNN 994
                   R   E+ VLG Y SGHPL  ++  L++           +K  EES   +   +
Sbjct: 946  QEYEERERLNLEKEVLGMYVSGHPLSQFEKELQEKTSMDNGKLNSLKEEEESYLQMNETD 1005

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +  M+V+K  K T++   + ++   +     E   FP
Sbjct: 1006 VIMGGMIVTKTIKTTKRNEIMAFLELEDLYGAIEIVVFP 1044


>gi|158521896|ref|YP_001529766.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3]
 gi|158510722|gb|ABW67689.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3]
          Length = 1182

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/1044 (37%), Positives = 599/1044 (57%), Gaps = 39/1044 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
             P FVHL VH++YSLL+G + +  ++ +       A+AITD   +F  + F ++A  AGI
Sbjct: 7    GPDFVHLHVHTAYSLLDGIIRIEALMKRAVEYGMGAVAITDHGTMFGVVSFYKEAVKAGI 66

Query: 68   QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +P+IGC+  +    + D   M + G      +  +VLL  T EGY+ L  L S +  L  
Sbjct: 67   KPVIGCECYVAPRSITDRTPMDHDG------LSHLVLLAETMEGYRNLCHLAS-IASLKG 119

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LY 183
                 RI    L++ G  GLI L+    G + +     +++ A++    +++  G+   +
Sbjct: 120  FYHKPRIDKELLKQYGN-GLIGLSACLKGEVAQRLLEGNTEAADRAARFYQEALGENSFF 178

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q +   ++ R  + + +++    +PLV TN+  +L  ED+  HD+ + +     +  
Sbjct: 179  LEVQNNGIPEQTRLNAALREMSDRLSIPLVGTNDCHYLDREDHNIHDLSLCLQTGKTIHD 238

Query: 243  KDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQ---VHAPILPRFIEK 298
             DR R   D    K + EM +     P A  NTV IA RC+  L    +H P+      K
Sbjct: 239  ADRFRFETDQLNFKPKHEMCTFLEPFPNAATNTVAIADRCNVELDFKTLHFPVFATPPGK 298

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAK---GYHAQDYRQRLDFELNVIARMKFSG 355
              D + +E   E       G   RL   A+A+    +  + Y +RL+FEL+VI  M F  
Sbjct: 299  TVDQLFEETVRE-------GFARRLK--AVARKNPDFDREAYDRRLEFELSVITDMGFPS 349

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI  AK+N IP+GPGRGS AGS+ +YA+ ITD+DP+   LLFERFLNP+R SM
Sbjct: 350  YFLIVADFIAHAKENGIPIGPGRGSAAGSIVSYAMGITDLDPIEHGLLFERFLNPERKSM 409

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            PD D+D C   R+ V  Y+  KYG  + VAQIITFGS++++A +RDVGR + +P S VDR
Sbjct: 410  PDIDVDICIIGRERVYHYLVEKYGGSDYVAQIITFGSMKSRAVIRDVGRVMGIPLSDVDR 469

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            + KLIP + +   +L    D  +  ++R   P    L+   + LEG+ RHASTHAAG+VI
Sbjct: 470  IAKLIPMNKSLDEALAEEPDLKKLVDSR---PDFAELVAAGRALEGMPRHASTHAAGVVI 526

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
            GD+PL++ +P+Y  V+ +  +TQ++MK +E  GL+K D LGL+ LT++  +L  L Q+G 
Sbjct: 527  GDKPLTEYLPLYA-VKENEALTQYDMKCVEAIGLVKLDLLGLRNLTVIADTLKILQQQGR 585

Query: 595  KV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            +V D+S +   D +TY LL    T G+FQLES+GM++ L  ++P    DI ALV+LYRPG
Sbjct: 586  QVPDMSHLDLADEKTYQLLCAGKTTGVFQLESTGMKELLLKLKPTTFADITALVALYRPG 645

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+ +  +V +   ++G++++  + P ++P+LKET GVI+YQEQVMQIAQ ++GY++  AD
Sbjct: 646  PMGSGMLVDFVECRHGRKRVEYLIPELEPILKETYGVIVYQEQVMQIAQAVAGYTMGTAD 705

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             LR+AMGKKI  +M + +  FI GA   GI K  A  ++E +  F +YGFNKSH+AAYA+
Sbjct: 706  DLRKAMGKKIAAKMAEHQATFIEGALARGIDKAKAETLYEQIKFFGEYGFNKSHSAAYAL 765

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +++QTA++K H+PVE +AA +T   +    + KF  + R  +I+++PP +N   V F V 
Sbjct: 766  VAFQTAYLKAHFPVELMAALLTSSTNKTIDVVKFIAECRALDIEVLPPDINESEVAFSVV 825

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             +R+ + L A+K VG      I+E   A+  F S+ D C RV   K+N++VLESLV  GA
Sbjct: 826  GDRLRFGLLAVKNVGEGAIEAIVEERRANGRFVSIFDLCERVPLTKVNKKVLESLVKCGA 885

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSS 949
            LD  G  R Q+   L++   + Q V++ + +   ++F       + +  TL      +  
Sbjct: 886  LDSTGAGRAQMTAVLEDALAHGQTVQREKNDSQMSLFDMPGADAALNAPTLPDMPEWSDR 945

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             R   E+ VLGFY SGHPL  Y+ +LRK               +N+ +   +    +K T
Sbjct: 946  QRLAFEKEVLGFYVSGHPLAAYRDVLRKYANTDALTLKEIADQSNVIIGGGITVVNRKTT 1005

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            ++G ++  VT  +     E   FP
Sbjct: 1006 KRGDQMAIVTIEDMYGTVEVVVFP 1029


>gi|260434289|ref|ZP_05788259.1| DNA polymerase III, alpha subunit [Synechococcus sp. WH 8109]
 gi|260412163|gb|EEX05459.1| DNA polymerase III, alpha subunit [Synechococcus sp. WH 8109]
          Length = 1172

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/1067 (37%), Positives = 600/1067 (56%), Gaps = 69/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++      PAIA+TD   ++ A+E  +      ++P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPAMVERARQLGMPAIALTDHGVMYGAIELLKLCQGTDLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IIG ++ +       +      P P       +V+L   A GY+ L++L S  +L     
Sbjct: 62   IIGNEMYV-------INGSIDDPQPKKEKRYHLVVLAKNATGYRNLVKLTSISHLRGMRG 114

Query: 127  QSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            + +  R C+   L +  +EGLI+ T    G I +A       VA K    ++++F D  Y
Sbjct: 115  RGIFSRACIDKELLKQHSEGLIIATACLGGEIAQAILRGRPDVARKVAAWYQEVFADDYY 174

Query: 184  VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H    DR    +VV++A    + +VATN++ +LS++D EAHD L+ V    +++ 
Sbjct: 175  LEIQDHGSPEDRIVNVEVVKIAKELGIQIVATNDAHYLSKQDVEAHDALLCVLTGKLITD 234

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296
            + R R T   Y+K   EM  +F D      + EA+ NTV++A +      +    +PRF 
Sbjct: 235  EKRLRYTGTEYIKTEEEMDLLFGDHLEPEVVQEAIANTVKVAEKVEPYDILGRYQMPRFP 294

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E         + LR     GL  RL     A      DY +R+  EL ++ +M F  Y
Sbjct: 295  IPEA----HTPVSYLREVTEQGLRDRLELSPEAP--LPDDYAERMAHELKIMEQMGFPTY 348

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL+V D+I++A++ NIPVGPGRGS AGS+ AY L IT+IDP+   LLFERFLNP+R SMP
Sbjct: 349  FLVVWDYIRFARERNIPVGPGRGSAAGSLVAYCLGITNIDPITNCLLFERFLNPERKSMP 408

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL 
Sbjct: 409  DIDTDFCIERRSEVIDYVTERYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLA 468

Query: 477  KLIPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            KLIP     P  L+A+    + +  FRE   ADP+V R ++++ ++EG  +    HAAG+
Sbjct: 469  KLIPVVRGKPAKLKAMIGEESPNPEFREKYEADPTVKRWVDMAMRIEGTNKTFGVHAAGV 528

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQ 591
            VI   PL +LVP+ R+    + +TQ+ M+ +E  GL+K DFLGLK LT+++K+L+ +   
Sbjct: 529  VIAADPLDELVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIEKTLELVEVS 587

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             G +VD   +P  D ET+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYR
Sbjct: 588  SGTRVDPDKLPPQDEETFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYR 647

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+D  ++  + NRK+G+E I   H +++P+L ET G+++YQEQ+M+IAQ L+GYSL +
Sbjct: 648  PGPLDAGLIPKFINRKHGREAIDFAHAILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQ 707

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK   EM K +  F+ GA + G+ + +A  +F+ +  FA+Y FNKSH+ AY
Sbjct: 708  ADLLRRAMGKKKVSEMQKHRGIFVKGAGERGVDEKVADELFDQMVLFAEYCFNKSHSTAY 767

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
              ++YQTA++K HYPV ++AA +T+     +K++++  +     I++MPP VN    DF 
Sbjct: 768  GAVTYQTAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDVNASLTDFT 827

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
               +RI + L+A++ +G    R ++ A  +D PF SL D C R+ S  LNRR LESL+  
Sbjct: 828  PNGDRILFGLSAVRNLGDGAIRQLIAARDSDGPFRSLADLCDRIPSSVLNRRGLESLIHC 887

Query: 889  GALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----------------AH 929
            GALD      +R QL+  LD +  +A    K+R +   N+F                 A 
Sbjct: 888  GALDAMDPQANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAPAADADGPADLSHAP 947

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP---ILRKMGIKGYEES 986
            +     D    EK  +E           ++GFY S HPL    P   +L  +G+   EE 
Sbjct: 948  KAAPVPDYPPTEKLRLEKD---------LVGFYLSDHPLKQLTPSSKLLAPIGLGSLEEQ 998

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                + + I   AMV   +Q  TRKG R+  +   +     EA  FP
Sbjct: 999  PDKAKVSAI---AMVAEMRQVTTRKGDRMAILQLEDLTGSCEAVVFP 1042


>gi|305433235|ref|ZP_07402391.1| DNA-directed DNA polymerase III alpha subunit [Campylobacter coli
           JV20]
 gi|304443936|gb|EFM36593.1| DNA-directed DNA polymerase III alpha subunit [Campylobacter coli
           JV20]
          Length = 1200

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/1003 (39%), Positives = 598/1003 (59%), Gaps = 58/1003 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   + G++PI
Sbjct: 4   FTHLHLHTEYSLLDGANKLKELAKTLKEQGATSVAMTDHGNMFGAIDFYQTMRSEGLKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129
           IG +  +   +++      +  F     + L      GYQ L+ L S+ Y+  +G     
Sbjct: 64  IGLEAYLHNHEDIS-DKSSRQRF----HLCLYAKNEVGYQNLMYLSSQSYI--KGLYYYP 116

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS----------QVAEKRLLTFKKLFG 179
           RI    L+E  +EGLI  +    G ++     +S           + A++  L +KK+FG
Sbjct: 117 RINKKLLEE-HSEGLICSSACLQGEVNWHLNIHSERNVRFGAKGYEAAKEAALWYKKVFG 175

Query: 180 DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
           D  Y  + RH  G  R  +  +++L+    + ++ATN++ +  +E   AH+V M +A   
Sbjct: 176 DDFYFEIMRHGIGDQRAIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGK 235

Query: 239 VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-- 295
            ++  DR R +  + Y+K+ ++M  +F+D+PEA+ENT EIA +C+  L +  P  P F  
Sbjct: 236 KLNDPDRLRHSVHEFYVKSPAQMSELFADIPEAIENTQEIANKCNLELNLGNPTPPNFKF 295

Query: 296 ---IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDF 343
                KE +    EE  E    N  V        GLE RL    I+K    ++Y+ RL+ 
Sbjct: 296 TREYAKEYNISLPEEGKEFSFDNDDVVFDELCKKGLEERLKFVDISK---HEEYKTRLEV 352

Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
           E+N+I +MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ AY+L ITD+DP+ +SLL
Sbjct: 353 EINIIKKMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVAYSLKITDLDPIPYSLL 412

Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           FERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L A+  +RDV R
Sbjct: 413 FERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLARGVIRDVAR 472

Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLY 522
              M     D L KLIP +    ++L A  + + + +E     P    + E ++ LEGL 
Sbjct: 473 VCDMSIPDADELAKLIPEEL--KITLDAAYEKEPKIKEFIERHPKGPEVWEYAKALEGLN 530

Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLT 580
           R+A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT
Sbjct: 531 RNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLT 590

Query: 581 LLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
           L+  ++  + +R  K +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+ 
Sbjct: 591 LINNAIKLIKKRYNKDIIWEAIDVNDAKVYKTIQSGNTLGIFQIESGGMQNLNARLKPER 650

Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
            EDIIA+++LYRPGP+++ ++  + +RK+G +KI      ++ +L+ T G+I+YQEQVMQ
Sbjct: 651 FEDIIAVLALYRPGPMESGMLDDFIDRKHGLKKIEYPFDTLESVLEPTYGIIVYQEQVMQ 710

Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
           I Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A  ++EL+ KFA
Sbjct: 711 IVQIIGGFSLGGADVVRRAMGKKDPEKMKKLKSEFADGAEKQGYDRVKAEELWELIVKFA 770

Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++
Sbjct: 771 GYGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLL 830

Query: 818 PPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
           PPSVN    +F       G + I Y L AIK VG     +++EA     F +++DF SR+
Sbjct: 831 PPSVNKAIREFSAVEQEDGKDAIVYGLGAIKSVGIPAVENLLEARERGEFKNIDDFLSRI 890

Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
           +  K+N+R LESL+ AGA D FGY+R  L  ++DN+ + ++ +   R N   ++F  ++ 
Sbjct: 891 EPTKINKRTLESLIKAGAFDEFGYTRKCLFDNMDNLTEGSKKMADARKNAASSLFGEDEL 950

Query: 933 TFSDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
           T   ++ +    E+F V     + E E+ +LG Y SGHPLD +
Sbjct: 951 TVGLQVNIVAKNEEFEVME---KLEFEKEILGIYVSGHPLDRF 990


>gi|257460063|ref|ZP_05625167.1| DNA polymerase III, alpha subunit [Campylobacter gracilis RM3268]
 gi|257442504|gb|EEV17643.1| DNA polymerase III, alpha subunit [Campylobacter gracilis RM3268]
          Length = 1381

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/1007 (38%), Positives = 598/1007 (59%), Gaps = 60/1007 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           + HL +H+ YSLL+GA  ++ + + + +    A AITD  N+F A++F Q     GI+PI
Sbjct: 4   YTHLHLHTEYSLLDGANKVSELAELLQSRGTKACAITDHGNMFGAIDFYQTMKKHGIKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  +   D++     G         ++LL     GY+ L+ L SR +L D      R
Sbjct: 64  IGIETYLHNHDDI-----GDKSDRQRYHLILLAKNETGYKNLMYLSSRAFL-DGFYYYPR 117

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ-----------VAEKRLLTFKKLFG 179
           I    L+E  +EGLI  +   +G ++  F  N S+            A+K  L +K++FG
Sbjct: 118 INKKILKE-HSEGLICSSACLAGEVE--FHLNRSERNLKRGAGGYEAAKKAALEYKEIFG 174

Query: 180 DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
           +  Y+ + RH  G     +  +++L+    + ++ATN++ +  ++  +AHDV   ++   
Sbjct: 175 EDFYLEIMRHGIGEQLNVDKDLIRLSREIGVKIIATNDAHYSRKDRAKAHDVYQCISMGK 234

Query: 239 VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC----SFILQVHAPILP 293
            ++  DR + V  + Y+K+  EM  +F+D+PE +ENT EI ++C    +F  + +AP  P
Sbjct: 235 TINDGDRLKHVVSEFYVKSDEEMRRLFADIPEVIENTAEIVQKCNLKFAFDEKDYAPTPP 294

Query: 294 RF---IEKEC----DDIQKEEENELRNK-------AVAGLEVRLAQGAIAKGYHAQDYRQ 339
            F   IE          Q +E     N           GL+ RL     AK    + YR+
Sbjct: 295 NFKFTIEYAARLGLSLPQPDERYSFANDDFLFDHLCREGLKERLKFIDPAK---HEIYRE 351

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
           RL+ EL +I  M FSGY +IV DFI WAK ++IPVGPGRGS AGS+ AYAL ITD+DP+ 
Sbjct: 352 RLEKELAIIKNMHFSGYMVIVQDFINWAKDHDIPVGPGRGSAAGSICAYALRITDLDPIP 411

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
           ++LLFERFLNP R+SMPD D+DFCQ RR EVI YV ++YG   VAQ+ TFG L A+  +R
Sbjct: 412 YNLLFERFLNPSRISMPDIDVDFCQARRGEVIDYVIDQYGKFNVAQVATFGKLLARGVIR 471

Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
           DV R   MP SQ D++ KLIP+     ++ QA   + + +E   ADP   ++ E +  LE
Sbjct: 472 DVARVCDMPLSQADKMAKLIPDKLGITLT-QAYDAEPKLKEFIDADPIAQQVWEFALGLE 530

Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLK 577
           GL R+A  HAAG+VI + PL    P+++  + +    VTQ+   ++E   LIKFDFLGLK
Sbjct: 531 GLNRNAGMHAAGVVISNEPLWNKAPLFKQDKGEDARLVTQYTKNYLEDVDLIKFDFLGLK 590

Query: 578 TLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            L ++  +   + +R G  +    I F+D +TY  + +  TLGIFQ+E +GM+     ++
Sbjct: 591 NLDVIDNAAKLVKRRYGRDIVWEEIDFNDRKTYETIQSGNTLGIFQIEGAGMQDLAMNLR 650

Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
           PD  EDIIA++SLYRPGP+D I  +   K+G+ K   I P +  +L+ T G+I+YQEQVM
Sbjct: 651 PDRFEDIIAMISLYRPGPMDLIPDFIRIKHGELKASYIFPELKEILEPTYGIIVYQEQVM 710

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           QI Q + G+SL +AD++RRAMGKK ++++   +E+++SGA + G     A  +F+L+ KF
Sbjct: 711 QIVQKVGGFSLGDADLVRRAMGKKDEKKLAHMREQYLSGAKELGFDVAKADELFDLIMKF 770

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
           A YGFNKSHAAAY++I++QTA++KT+YP EF+AA +T E  N +KI K+  +A +  I +
Sbjct: 771 ASYGFNKSHAAAYSMITFQTAYLKTYYPAEFMAALLTSEEGNTDKISKYIDEASRLGIGL 830

Query: 817 MPPSVNTPCVDFKVGDNR-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
           +PPS+N     F V D+        I Y L AIKGVG     +I+E  ++  F S++DF 
Sbjct: 831 LPPSINQSLRGFSVVDDENSKSGTSIIYGLGAIKGVGAAAIENILELQSEAKFQSIDDFA 890

Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
           SRVD+ ++N++V+ESL++AGA+DC G SR+ ++Q+++NI +  + + + + +   ++F  
Sbjct: 891 SRVDNFRVNKKVIESLIYAGAMDCLGKSRLAMIQNMENILEVMKKITEIKKDAASSLFGE 950

Query: 930 EK----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
           ++    G     +  +K   +   ++F  EQ+ +G Y SGHPLD YK
Sbjct: 951 DEDMTSGMSVSFVDTDKEFPQGEILKF--EQQTVGVYLSGHPLDDYK 995


>gi|238018709|ref|ZP_04599135.1| hypothetical protein VEIDISOL_00553 [Veillonella dispar ATCC 17748]
 gi|237865180|gb|EEP66470.1| hypothetical protein VEIDISOL_00553 [Veillonella dispar ATCC 17748]
          Length = 1135

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/1012 (37%), Positives = 614/1012 (60%), Gaps = 33/1012 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +SLL+G   L +++ +     QPA+AITD  N+++A+ F ++  + GI+PI
Sbjct: 4    FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECVSQGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +   +  ++  Q       +  ++LL  T EGY+ L+++VS+    +      R
Sbjct: 64   IGCEVYV--TEGSRLDKQEGRSRERLKHLILLAETMEGYRNLVKIVSKAST-EGFNYKPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L++  ++G+I L+    G I +    ++ + A++ +  + + +G D  ++ +Q H
Sbjct: 121  ADRDLLRQY-SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQNH 179

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +  + + ++++L+  + L +VA+N+  ++ +ED +A D+ + ++     ++ DR + 
Sbjct: 180  GLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLKF 239

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +F  +P A+ENT++IA RC+         LP F      D+ + E
Sbjct: 240  PNDEFYLKSGDEMAELFGHIPGAMENTLKIADRCNVEFNFDEHHLPHF------DVPEGE 293

Query: 308  ENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++   + V   E+ RL       G  +++ ++RLD+EL+VI  M F  YFLIV D++++
Sbjct: 294  TSKTYLRKVCEREIPRLY------GETSEELQKRLDYELDVIGTMGFEDYFLIVWDYVRY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++
Sbjct: 348  AREHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEK 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R + I YV  KYG ERV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+    
Sbjct: 408  RGQAIEYVTRKYGQERVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELG-- 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            ++L         +    ADP+V  L +  +KLEG+ R++STHAAG+VI   PL   VP+ 
Sbjct: 466  ITLDKALQGKELKALYEADPNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPV- 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
            ++   D  VTQ++   IE+ GL+K DFLGL+TLT++  +L  + A RG+ +DL  IP DD
Sbjct: 525  QNANDDGFVTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
                 +LT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +V  + +
Sbjct: 585  KAACDILTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFID 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK + 
Sbjct: 645  RRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKES 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  Q+E FI G+  NGI ++IA  +F+LL  FA YGFNKSH+AAYA I+YQTA++K HY
Sbjct: 705  VLKAQRESFIQGSINNGIEESIANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHY 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              EF+AA+MT  M N++K+  +    ++ N++++ P +N     F V  + I + L  IK
Sbjct: 765  FPEFMAATMTSFMQNMQKLTYYINACKKHNVKVLGPDINYSERSFAVQGDAIRFGLGGIK 824

Query: 844  GVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG     R I E +    +  + DFC RVD+K +N+R+LESL+  GA+D F  +R QLL
Sbjct: 825  NVGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGAMDGFKENRNQLL 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
               ++ Q      +K+      ++F    E   F     +E  S ++   + ++E+   G
Sbjct: 885  HMYESAQAVGAKEQKDAAMGTMSLFGDIEESVDFIPVPNVEDLSEDD---KLKDEKEYTG 941

Query: 961  FYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
            FY +GHPL  Y   L  +  +    E+     G  I    ++ +K  + TR+
Sbjct: 942  FYITGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKTDRMTRR 993


>gi|78212689|ref|YP_381468.1| DNA polymerase III subunit alpha [Synechococcus sp. CC9605]
 gi|78197148|gb|ABB34913.1| DNA polymerase III, alpha subunit [Synechococcus sp. CC9605]
          Length = 1172

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/1067 (37%), Positives = 601/1067 (56%), Gaps = 69/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++      PAIA+TD   ++ A+E  +      ++P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPAMVEEAKQLGMPAIALTDHGVMYGAIELLKLCQGTDLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IIG ++ +       +      P P       +V+L   A GY+ L++L S  +L     
Sbjct: 62   IIGNEMYV-------INGSIDDPQPKKEKRYHLVVLAKNATGYRNLVKLTSISHLRGMRG 114

Query: 127  QSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            + +  R C+   L +  +EGLI+ T    G I +A       VA K    ++++FGD  Y
Sbjct: 115  RGIFSRACIDKELLKQHSEGLIIATACLGGEIAQAILRGRPDVARKVAAWYQEVFGDDYY 174

Query: 184  VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H    DR    ++V++A    + +VATN++ +LS++D EAHD L+ V    +++ 
Sbjct: 175  LEIQDHGSPEDRIVNVEIVKIAKELGIQIVATNDAHYLSKQDVEAHDALLCVLTGKLITD 234

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296
            + R R T   Y+K   EM  +F D      + EA+ NTV++A +      +    +PRF 
Sbjct: 235  EKRLRYTGTEYIKTEEEMGLLFGDHLEPEVVQEAIANTVKVAEKVEPYDILGRYQMPRFP 294

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E         + LR     GL  RL     A      DY +R+  EL ++ +M F  Y
Sbjct: 295  IPE----GHTPVSYLREVTEQGLRDRLELSPEAS--LPDDYAERMAHELKIMEQMGFPTY 348

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL+V D+I++A++ NIPVGPGRGS AGS+ AY L IT+IDP+   LLFERFLNP+R SMP
Sbjct: 349  FLVVWDYIRFAREQNIPVGPGRGSAAGSLVAYCLGITNIDPITNCLLFERFLNPERKSMP 408

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL 
Sbjct: 409  DIDTDFCIERRGEVIDYVTERYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLA 468

Query: 477  KLIPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            KLIP     P  L+A+    + +  FRE   ADP+V R ++++ ++EG  +    HAAG+
Sbjct: 469  KLIPVVRGKPAKLKAMIGEESPNPEFREKYEADPTVKRWVDMAMRIEGTNKTFGVHAAGV 528

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQ 591
            VI   PL +LVP+ R+    + +TQ+ M+ +E  GL+K DFLGLK LT+++K+L+ +   
Sbjct: 529  VIAADPLDELVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIEKTLELVEVS 587

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             G +VD   +P  D  T+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYR
Sbjct: 588  SGTRVDPDKLPPQDEATFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYR 647

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+D  ++  + NRK+G+E I   H +++P+L ET G+++YQEQ+M+IAQ L+GYSL +
Sbjct: 648  PGPLDAGLIPKFINRKHGREAIDFAHAILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQ 707

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK   EM K +  F+ GA + G+ + +A  +F+ +  FA+Y FNKSH+ AY
Sbjct: 708  ADLLRRAMGKKKVSEMQKHRGIFVQGAGERGVDEKVADELFDQMVLFAEYCFNKSHSTAY 767

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
              ++YQTA++K HYPV ++AA +T+     +K++++  +     I++MPP VN    DF 
Sbjct: 768  GAVTYQTAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDVNASLTDFT 827

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
               +RI + L+A++ +G    R ++ A  +D PF SL D C R+ S  LNRR LESLV  
Sbjct: 828  PNGDRILFGLSAVRNLGDGAIRQLIAARDSDGPFRSLADLCDRIPSSVLNRRGLESLVHC 887

Query: 889  GALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----------------AH 929
            GALD      +R QL+  LD +  +A    K+R +   N+F                 A 
Sbjct: 888  GALDAMDPQANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAPAADADGPADLSHAP 947

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP---ILRKMGIKGYEES 986
            +    +D    EK  +E           ++GFY S HPL    P   +L  +G+   EE 
Sbjct: 948  KAAPVTDYPPTEKLRLEKD---------LVGFYLSDHPLKQLTPSSKLLAPIGLGSLEEQ 998

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                + + I   AMV   +Q  TRKG R+  +   +     EA  FP
Sbjct: 999  PDKAKVSAI---AMVAEMRQVTTRKGDRMAILQLEDLTGSCEAVVFP 1042


>gi|295706863|ref|YP_003599938.1| DNA polymerase III subunit alpha [Bacillus megaterium DSM 319]
 gi|294804522|gb|ADF41588.1| DNA polymerase III, alpha subunit [Bacillus megaterium DSM 319]
          Length = 1116

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/1030 (37%), Positives = 610/1030 (59%), Gaps = 47/1030 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ+ SSYSLL  ++ ++ +++        AIA+TD N ++  + F +    AGI+PI
Sbjct: 3    FVHLQLQSSYSLLSSSVRIHELVETAKKMNYEAIALTDENVMYGVIPFYKACVKAGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L I   +      + +  +P    +VLL    +GY+ L++L S    L Q K+   
Sbjct: 63   IGLTLSILEHE------ESERAYP----LVLLAENDKGYENLLKLSS----LVQTKEKHG 108

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   WL    + GLI +T G +G ++     N  Q A++ L  FKK++   LY+++QRH 
Sbjct: 109  VNKKWLHHY-SGGLIAITPGVTGEVETLLAENKFQDAKRVLQFFKKVYSQSLYISIQRHG 167

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQKDRPRVT 249
              + +   Q+ +LA    +PLVATN   +L +ED +A++ L+A+     + S ++    +
Sbjct: 168  QDETFINQQLTELAAEENIPLVATNQVKYLKKEDRDAYECLVAIRDGEKLHSDEEVKSKS 227

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             ++Y K+  EM  +F D    +E +++IARRC   + +    +P++              
Sbjct: 228  SEYYFKSPDEMEDLFHDQHFLIEESIKIARRCELEISLGVMSIPKYPVPPS----VTSST 283

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR     GL+ R+           + Y +RLD+ELN+I  M+FS YFLIV DF+ +A +
Sbjct: 284  YLRTLCEKGLQERVQ-------VITEQYEERLDYELNIIENMRFSDYFLIVWDFMNYAHE 336

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            + I  GPGRGS AGS+ +YAL IT++DP++  LLFERFLNP+R+SMPD DIDF  ++RD+
Sbjct: 337  HGILTGPGRGSAAGSLVSYALRITNVDPIQHQLLFERFLNPERISMPDIDIDFPDNKRDQ 396

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YV  KYG   VAQIITFG+L AKAA+RDVGR +      ++++ K IP  P    +L
Sbjct: 397  VIQYVAQKYGGLHVAQIITFGTLAAKAAVRDVGRVMGFDQEALNKMSKAIPTKPG--TTL 454

Query: 490  QAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            ++   DSR  +  L++    +    I+ K+EGL RH STHAAG+VI ++PL+Q V + ++
Sbjct: 455  KSALRDSRVLQDYLSENEARKQWYNIAMKIEGLPRHTSTHAAGVVISEKPLTQSVAV-QE 513

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D+ +TQ+ M+ ++  GL+K DFLGL+ LT+L   L  + +    K+ LS IPF+D +
Sbjct: 514  GHDDVYLTQYPMEALQDVGLLKMDFLGLRNLTILDHILKKIERDMNRKLSLSHIPFNDQK 573

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL+   T GIFQLES GMR+ L+ ++P  +EDI+A+ +LYRPGP++NI  Y  RK+G
Sbjct: 574  TFELLSKGDTTGIFQLESDGMRRVLQQLKPTELEDIVAVNALYRPGPMENIPTYIKRKHG 633

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             EK++  HP +  +L+ T GVI+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +  +D+
Sbjct: 634  VEKVIYDHPTLKDILQSTHGVIVYQEQIMQIASKMAGFSLGEADLLRRAVSKKERAVLDR 693

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  FI G+ K G   ++A  +++L+ +FADYGFN+SHA AY++++YQ A++K HYP++F
Sbjct: 694  ERAHFIQGSKKKGYDLSVANRVYDLIVRFADYGFNRSHAVAYSMVAYQLAYLKAHYPLQF 753

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             +A +T  + N  KI ++  + ++  IQ++PPS+N     F V    I YSLAAIK +G 
Sbjct: 754  FSALLTSVIGNEGKIAQYINELKRNKIQVLPPSINKSMYSFNVEGESIRYSLAAIKHIGA 813

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               + I E    K F+ L DFC+RV  K +N++ LE+L+ +G  D FG +R  LL ++D 
Sbjct: 814  AAMQEITEERKKKRFEDLFDFCARVSQKAVNKKGLEALILSGGFDEFGENRATLLATIDV 873

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN----EQRVLGFYF 963
              ++A  V              +   F D+ +L+   +E   ++ E+    E+ +LGFY 
Sbjct: 874  AFEHASLV-----------LPDDDFGFGDEFSLKPKYMEKEELKIEDRLQYEKDMLGFYL 922

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S HP   Y+ +     +    +      G  + L   V+  +  +T+KG ++ ++  ++ 
Sbjct: 923  SSHPASQYEALNSFYSVVSLHDMKEYASGKAVSLLVFVLEIRVIRTKKGEQMAFLRITDE 982

Query: 1024 AKEYEANFFP 1033
            + E E   FP
Sbjct: 983  SGEGEVVAFP 992


>gi|148653037|ref|YP_001280130.1| DNA polymerase III subunit alpha [Psychrobacter sp. PRwf-1]
 gi|148572121|gb|ABQ94180.1| DNA polymerase III, alpha subunit [Psychrobacter sp. PRwf-1]
          Length = 1203

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/1012 (38%), Positives = 593/1012 (58%), Gaps = 80/1012 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +FVHL +HS +S+ +  + +  ++   AAD Q A+A+TD +NL++ ++F +    A I+P
Sbjct: 2   AFVHLGIHSEFSITDSIIRIKPMVKAAAADGQMALALTDLSNLYATVKFYRACLDAAIKP 61

Query: 70  IIGCQLDIDMQDN----LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           IIG ++ +D +      L M N+G      + S+           R   +V++ +LLD  
Sbjct: 62  IIGAEIILDDEHTRLTLLAMNNEGYQSITRIVSLGFTDGRMNPDNRGTPIVNKAHLLDN- 120

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                          + G+I+L    S  + +A    + +   + +  ++ +FGDRLY  
Sbjct: 121 ---------------SAGVIVLFTEKSD-VGQALLGANPERGHQLISEYQAVFGDRLYFA 164

Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           ++R  R  +     Q +     H +  VA N+  FL EED++AH+  + +A S V++  +
Sbjct: 165 IKRTKRALEDTFIEQAILAGQRHGIATVAHNDVRFLEEEDFDAHEARVCIASSHVLADPN 224

Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
           RP   + + YLK +++M  +FSD+P+ ++NTV +A+RC+  L +   +LP F   E + I
Sbjct: 225 RPHDYSSEQYLKTQAQMTELFSDIPQVVQNTVILAQRCNVTLTLGINVLPEFPVPEGETI 284

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-----------YRQRLDFELNVIARMK 352
               E+  R ++  GLE RL      K Y   +           Y +RL+ ELN+I  M 
Sbjct: 285 ----ESFFRAESQRGLEARLD-----KLYPVSERDETWPEIRRPYDERLEHELNIILEMG 335

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R
Sbjct: 336 FPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYALNITDLDPLHYDLLFERFLNPER 395

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
           +SMPDFDIDFC + RD VI YV ++YG E V+QIITFG++ AKA +RDV R     Y   
Sbjct: 396 VSMPDFDIDFCIEGRDRVIEYVASQYGREAVSQIITFGTMAAKAVVRDVARVQSKSYGLA 455

Query: 473 DRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADP------SVDRLLEISQKLEGLYRHA 525
           D++ KLIP  P   +SL+ A+ ++ + ++  L++P        + + E++ KLEG+ R+ 
Sbjct: 456 DKISKLIPKTPG--ISLKDALLEEPQLKDL-LSNPDNMDYEDANEIWEMAIKLEGITRNV 512

Query: 526 STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
             HA G++I    ++    +Y D      V+QF+   +E  GL+KFDFLGL+ LT++  +
Sbjct: 513 GKHAGGVLIAPNKITDFSAIYCDEEGHR-VSQFDKDDVESVGLVKFDFLGLRNLTVINAA 571

Query: 586 LDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           +  + +R  +     ++L  +P DD   Y LL    T  +FQLESSGM++ L  +QP  I
Sbjct: 572 VKNINERRARENKPALELEDLPLDDTNAYKLLQDAKTTAVFQLESSGMKKYLAKLQPTNI 631

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
           ED+IA+ +LYRPGP+D  +V  Y +RK+G+E++V  HP ++P+L+ T GVI+YQEQVMQI
Sbjct: 632 EDVIAMCALYRPGPLDAGMVEMYIDRKHGREEVVYDHPNLEPILENTNGVIVYQEQVMQI 691

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
           +Q+++GYSL  AD+LRRAMGKK  EEM KQ++ F++GA+  GI   I+  +F+L+ KFA 
Sbjct: 692 SQVMAGYSLGGADMLRRAMGKKKPEEMAKQRDIFVTGATAQGIDPVISGGVFDLMEKFAG 751

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
           YGFNKSH+AAY V++YQTA++K +YP EF+AA +T +M+N + +  F  D R+ F++ + 
Sbjct: 752 YGFNKSHSAAYGVLAYQTAYLKYYYPAEFMAAVLTSDMNNTDNVVFFINDCRENFDLSVD 811

Query: 818 PPSVNTPCVDFKVGD--NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDS 874
            PSVN     F V D    I Y L AIKGVG      I++A      F  L DFC RVD 
Sbjct: 812 NPSVNRSEWHF-VADTPTNIIYGLGAIKGVGEGAVDSIVQARRQGGKFTDLYDFCRRVDI 870

Query: 875 KKLNRRVLESLVFAGALDCFGYS-------------RMQLLQSLDNIQKYAQWVEKNRTN 921
           KK+N+R LE+L+ +G  D F  +             R  L+  L +  + A+   +N   
Sbjct: 871 KKVNKRTLEALIKSGCFDDFAITQRPDLAADERHQIRGALMAQLPSAVQAAEQERQNNEM 930

Query: 922 KHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              ++F+  +  T +  +  +   +     R + E+  LG Y +GHPLD Y+
Sbjct: 931 GMMDLFSEVDNATTAPPLPTDSGLIWGDKHRLKAEKDTLGLYLTGHPLDQYR 982


>gi|307265890|ref|ZP_07547439.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
            Rt8.B1]
 gi|306919059|gb|EFN49284.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
            Rt8.B1]
          Length = 1145

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/1056 (37%), Positives = 621/1056 (58%), Gaps = 59/1056 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G+  + +++ K       AIAITD   ++ A++F ++A A GI+PI
Sbjct: 2    FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGAIDFYKEAVAQGIKPI 61

Query: 71   IGCQLDI---DMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IGC++ +    MQD    + N+          +VLL     GY+ L+++V+ +  ++   
Sbjct: 62   IGCEIYVAPRSMQDREYGIDNENY-------HLVLLAKDMTGYKNLMKIVT-VASIEGFY 113

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
               R+   +L+E  +EGLI L+   +G +         + A++  L +  +FG    Y+ 
Sbjct: 114  YKPRVDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLE 172

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H   ++ +   ++++L+    +PLVATN+  +L ++D +AH+VL+ +     +  +D
Sbjct: 173  LQDHGILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDED 232

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R     D  YLK+  EM ++FS   EA+ENT +IA  C+   + +   LP++   E  D 
Sbjct: 233  RMSFPTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDS 292

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +     LRN    GL  R           +++  +RLD+EL+VI +M +  YFLIV DF
Sbjct: 293  YEY----LRNLCYEGLYKRYKN-------PSKEVIERLDYELSVIKQMGYVDYFLIVWDF 341

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++AK N I  GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC
Sbjct: 342  IKFAKDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFC 401

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL  PY++VD + K+IP + 
Sbjct: 402  YERRQEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDTIAKMIPFEL 461

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A++ +   +     +  V +L++IS+ LEGL RHASTHAAG+VI   PL   V
Sbjct: 462  GMTID-KALSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYV 520

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+ ++   D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + + +GV +D   + 
Sbjct: 521  PLQKN--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVIIDFDSME 578

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +DD + Y L++   T G+FQLES GM+Q +  ++P  +EDIIA +SLYRPGP+D I  Y 
Sbjct: 579  YDDPKVYELISKGETEGVFQLESPGMKQFMTELKPKNLEDIIAGISLYRPGPMDQIPRYL 638

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              +N  E IV  HPL+ P+L  T G ++YQEQVMQI + ++GYSL  +D++RRAM KK  
Sbjct: 639  ANRNHPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKM 698

Query: 723  EEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + M+++++ FI             GA +NG+ +  A  +F+ +  FA+Y FNKSHAAAYA
Sbjct: 699  DVMEQERKNFIYGIVDEEGNVIVPGALRNGLDEATANKLFDEMLDFANYAFNKSHAAAYA 758

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VI+YQTA++K +YPVEF+AA +   +DN++KI  + Q  ++  I+++PP +N     F V
Sbjct: 759  VIAYQTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVQVCKKMGIKVLPPDINESDSYFTV 818

Query: 831  GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +++I + L+A+K VG      I+ E   +  F S+ DF  R+   +LN++ +ESL+ AG
Sbjct: 819  VEDKIRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAG 878

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVE 946
            A   FG  R QLL   D + +  +    N  N   ++F       G   +   LE+F  +
Sbjct: 879  AFSSFGVRRSQLLSVYDKLMENIKKNRNNNLNGQISLFGEVEQSHGVEFEFPDLEEFP-K 937

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIR---GNNIRL 997
            N  +  E E   LG Y SGHPL+ Y   + K      +  K  EE +   +      + +
Sbjct: 938  NRLLSMEKE--TLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQEVVI 995

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            A ++ +K+ K T+  + + +VT  +     E   FP
Sbjct: 996  AGVIATKKIKFTKNNNMMAFVTIEDLYGTVEVIVFP 1031


>gi|88808431|ref|ZP_01123941.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 7805]
 gi|88787419|gb|EAR18576.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 7805]
          Length = 1173

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/1060 (38%), Positives = 603/1060 (56%), Gaps = 53/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++      PA+A+TD   ++ A+E  +    AGI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPQMVERAKELGMPALALTDHGVMYGAVELLKLCKGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVP---SIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IIG ++ +       +      P P       +V+L   A GY+ L++L S  +L     
Sbjct: 62   IIGNEMYV-------INGSIDDPQPKKERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRG 114

Query: 127  QSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            + +  R C+   L +  +EGLI+ T    G I +A       VA      ++++FG+  Y
Sbjct: 115  RGIFSRACIDKHLLKQYSEGLIVATACLGGEIPQAIMRERPDVARDVARWYQEVFGEDFY 174

Query: 184  VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H    DR    ++V++A    + +VATN++ +L+  D EAHD L+ V    ++S 
Sbjct: 175  LEIQDHGSPEDRIVNVEIVKIAQELGIQVVATNDAHYLTRHDVEAHDALLCVLTGKLISD 234

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296
            + R R T   YLK+  EM  +F+D      + EA+ NTV +A +      +    +PRF 
Sbjct: 235  EKRLRYTGTEYLKSEEEMGRLFADHLDPAVVQEAIANTVSVAEKVEDYDILGRYQMPRFP 294

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E           L      GL  RL  G  +     + Y  RL  EL ++ +M F  Y
Sbjct: 295  IPE----GHTPVTYLHEVTEQGLRDRL--GLSSNDTIEETYADRLAHELQIMEQMGFPTY 348

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL+V D+I++A++  IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMP
Sbjct: 349  FLVVWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMP 408

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D DFC +RR EVI YV  +YG E+VAQIITF  + +KA L+DV R L +PY   DRL 
Sbjct: 409  DIDTDFCIERRGEVIDYVTRRYGEEKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLA 468

Query: 477  KLIPNDPAHPVSLQA-IADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            KLIP     P  L+A I D+S    F+E    DP V R ++++ ++EG  +    HAAG+
Sbjct: 469  KLIPVVRGKPAKLKAMIGDESPNPEFKEKYDKDPVVQRWVDMAMRIEGTNKTFGVHAAGV 528

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI   PL +LVP+ R+    + +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +AQ 
Sbjct: 529  VIAADPLDELVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVAQS 587

Query: 593  -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             G ++D   +P  D  T+ LL      GIFQLES+GMRQ +  ++P  +EDI ++++LYR
Sbjct: 588  SGERIDPDKLPPQDQGTFDLLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYR 647

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+D  ++  + NRK+G+E I   H  ++P+L ET G+++YQEQ+M+IAQ L+GYSL E
Sbjct: 648  PGPLDAGLIPKFINRKHGREAIDFAHSTLEPILSETYGIMVYQEQIMRIAQDLAGYSLGE 707

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK   EM K +  F+ GAS+ G+   +A  +F+ +  FA+Y FNKSH+ AY
Sbjct: 708  ADLLRRAMGKKKVSEMQKHRGIFVKGASERGVDDKVADELFDQMVLFAEYCFNKSHSTAY 767

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
              ++YQTA++K HYPV ++AA +++     +K++++  +     I++MPP VN    DF 
Sbjct: 768  GAVTYQTAYLKAHYPVAYMAALLSVNAGASDKVQRYISNCNAMGIEVMPPDVNASGTDFT 827

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              D RI + L+A++ +G    R ++ +  AD PF+SL D C RV S  +NRR LESL+  
Sbjct: 828  PRDQRILFGLSAVRNLGDGAIRALIRSREADGPFESLADLCDRVPSSVINRRSLESLIHC 887

Query: 889  GALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-SDKITLEKFSV 945
            GA+D      +R QL+  LD +  +A    ++R +   N+F    G+   D       S+
Sbjct: 888  GAMDALEPEANRAQLIADLDLLLDWANSRARDRASGQGNLFDLMAGSADGDSDAPSDLSL 947

Query: 946  E---------NSSVRFENEQRVLGFYFSGHPLDVYKP---ILRKMGIKGYEESVATIRGN 993
                      + S + + E+ ++GFY S HPL    P   +L  +G+ G EE     + +
Sbjct: 948  APKAAPVKDYHPSEKLKLEKDLVGFYLSDHPLKQLTPPARLLAPIGLAGLEEQADKAKVS 1007

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             I   AMV   +Q  TRKG R+  +   +     EA  FP
Sbjct: 1008 AI---AMVSEMRQVTTRKGDRMAVLQLEDLTGSCEAVVFP 1044


>gi|296332089|ref|ZP_06874553.1| DNA polymerase III DnaE [Bacillus subtilis subsp. spizizenii ATCC
            6633]
 gi|305675516|ref|YP_003867188.1| DNA polymerase III subunit alpha [Bacillus subtilis subsp. spizizenii
            str. W23]
 gi|296150860|gb|EFG91745.1| DNA polymerase III DnaE [Bacillus subtilis subsp. spizizenii ATCC
            6633]
 gi|305413760|gb|ADM38879.1| DNA polymerase III, alpha subunit [Bacillus subtilis subsp.
            spizizenii str. W23]
          Length = 1115

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/1046 (38%), Positives = 601/1046 (57%), Gaps = 77/1046 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQVHS YSLL  A ++  ++ +       ++A+TD + ++ A++F +   A GI P
Sbjct: 2    SFVHLQVHSGYSLLNSAAAVEELVSEAERLGYASLALTDDHVMYGAIQFYKACKARGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    +   DN      G   +P    +VLL  +  GYQ L+++ S +    Q K   
Sbjct: 62   IIGLTASVFTDDN------GLEAYP----LVLLAKSNTGYQNLLKISSVL----QSKSKG 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPID----RAFFFNSSQVAEKRLLTFKKLFGD-RLYV 184
             +   WL     EG+I +T G  G I+       F  ++Q A    L F+ +FG    Y 
Sbjct: 108  GLKPKWLHSY-REGIIAITPGEKGYIEMLLEEGLFEQAAQAA----LEFQSIFGKGAFYF 162

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            + Q  +G     E Q+++L+    +P+ AT +  ++ +ED  A+  L A+     ++  D
Sbjct: 163  SYQPFKGNQALSE-QILRLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLT--D 219

Query: 245  RP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             P    PD  LK   EM +I+ + PEAL+ +VEIA++C   + +    LP F        
Sbjct: 220  APAEDLPDLDLKPLEEMQNIYREHPEALQESVEIAKQCRVDVSLGQTRLPSFPTPNG--- 276

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                ++ L +  +AGL  R        G   + Y +RL +EL VI RMKFS YFLIV DF
Sbjct: 277  -TSADDYLTDICMAGLRSRF-------GTPDERYLRRLQYELGVIKRMKFSDYFLIVWDF 328

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A    I  GPGRGS AGS+ AY L ITD+DP+   LLFERFLNP+R+SMPD DIDF 
Sbjct: 329  MKYAHDKGIVTGPGRGSAAGSLVAYVLYITDVDPINHHLLFERFLNPERISMPDIDIDFP 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RRDEVI+YVQ KYG   VAQIITFG+L AKAALRDVGR   +   + D+L KLIP  P
Sbjct: 389  DTRRDEVIQYVQQKYGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPARP 448

Query: 484  AHPVS---LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
               +     Q+   D R RE+ L    + ++  +++K+EGL RH STHAAG+V+ + PL+
Sbjct: 449  GMTLDEARKQSPQLDKRLRESSL----LQQVYMVARKIEGLPRHTSTHAAGVVLSEEPLT 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599
             +VP+ ++    + +TQ+ M  +E  GL+K DFLGL+ LTL++     +  +  +K+DLS
Sbjct: 505  DVVPL-QEGHEGIYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEKEENIKIDLS 563

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I + D +T+ LL+   T GIFQLES+GMR  L+ ++P  +EDI+A+ +LYRPGP++NI 
Sbjct: 564  SISYRDDKTFSLLSKGDTTGIFQLESAGMRSVLKRLKPSGLEDIVAVNALYRPGPMENIP 623

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            ++ +RK+G+  +   H  +  +L++T GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ K
Sbjct: 624  LFIDRKHGRAPVHYPHEDLRSILEDTYGVIVYQEQIMVIASRMAGFSLGEADLLRRAVSK 683

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D+++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I  Q A++
Sbjct: 684  KKKDILDQERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYL 743

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYP+ F+   +T  + N +KI ++  +A+   I+I+PPSVN     F V D  + YSL
Sbjct: 744  KAHYPLYFMCGLLTSVIGNEDKIAQYLYEAKGSGIRILPPSVNKSSYPFTVEDGAVRYSL 803

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             AIK VG +  + I +A  +KPF+ L DFC RV SK +NR+ LE+L+F+GA+D FG +R 
Sbjct: 804  RAIKSVGISAVKDIYKARKEKPFEDLFDFCFRVPSKSVNRKTLEALIFSGAMDEFGQNRA 863

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVENSSVRFEN-- 954
             LL S+D               +H  +FA    + G F D    E FS++   V  E   
Sbjct: 864  TLLASIDV------------ALEHTELFAADDDQMGLFLD----ESFSIKPKYVETEELP 907

Query: 955  -------EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                   E+  LG YFS HPL  Y+  L   G     ++    +   + L  ++   +  
Sbjct: 908  LVDLLAFEKETLGIYFSNHPLSAYRKQLAAHGAVSILQAQQAFK-RQLSLGVLLSKIKTI 966

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +T+ G  + ++T S+   E EA  FP
Sbjct: 967  RTKTGQNMAFLTLSDETGEMEAVVFP 992


>gi|254874369|ref|ZP_05247079.1| dnaE, DNA polymerase III alpha subunit [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254840368|gb|EET18804.1| dnaE, DNA polymerase III alpha subunit [Francisella tularensis
           subsp. tularensis MA00-2987]
          Length = 941

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/933 (40%), Positives = 564/933 (60%), Gaps = 36/933 (3%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4   HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRI 131
            +L +D            T F  +  +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64  VELKVD------------TEF-GICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             SWL E+  E +I L GG  G + +A        A++ +    ++FG   Y+       
Sbjct: 111 PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170

Query: 192 YDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247
           Y+    Y E + ++ A  + L  VATN ++F+  +DY+ H++   +   +T++ +  + +
Sbjct: 171 YENEGLYNE-KALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP  +       +KE 
Sbjct: 230 FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPT-VNIPAGLTEKEY 288

Query: 308 ENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            ++L      GL+ RL +      A    +  + Y+ RL  E+++I  M F GYFLIV D
Sbjct: 289 FSKL---CYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 346 FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C   RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  
Sbjct: 406 CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
           P           ++ + E + AD  V  ++E +QKLEGL R    HAAGIVI    +S  
Sbjct: 466 PGTTFKKILHEGETLYEEVQ-ADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK---VDL 598
            P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  + A+R      +D+
Sbjct: 525 APVYCENKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
           + IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI
Sbjct: 585 ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644

Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             + +RK+ +++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMG
Sbjct: 645 PTFIDRKHSRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704

Query: 719 KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
           KK  EEM+KQ++ F  GA+K + I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTA
Sbjct: 705 KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764

Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIY 836
           W+K HYP E++AA M+ +M N +++ KF  D +  +I ++ P+VN    D   V    I 
Sbjct: 765 WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMSITVLAPNVNKSVYDCIAVSKGTIL 824

Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             L AIKG+G    + I+ E      F S+ D C RVD +K+N++ LE+L +AGA+    
Sbjct: 825 LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884

Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
            +R     S++   K A +V +      +++F 
Sbjct: 885 KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFG 917


>gi|312880004|ref|ZP_07739804.1| DNA polymerase III, alpha subunit [Aminomonas paucivorans DSM 12260]
 gi|310783295|gb|EFQ23693.1| DNA polymerase III, alpha subunit [Aminomonas paucivorans DSM 12260]
          Length = 1136

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/1044 (39%), Positives = 598/1044 (57%), Gaps = 48/1044 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  F+HL VHS YSLL+GA+    +++  ++    A+A+TD   ++   EF +K+  AGI
Sbjct: 2    SEPFIHLHVHSEYSLLDGAIRCTELVETASSMGMNAVALTDHGVMYGCEEFFEKSEKAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI GC++ +D         +GK        +VL      GY+ L++LVS +   +    
Sbjct: 62   KPIFGCEVYVDPSGIDNREGKGKNH-----HLVLWAENETGYRNLVKLVS-LANTEGFYY 115

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNL 186
              RI    L     EGLI  +   +G I         + A  R   ++ + G+ R Y+ +
Sbjct: 116  KPRIDHHLLAR-HAEGLIGSSACLAGEIPSLILSGDYEAARDRAFLYRDILGEGRFYLEV 174

Query: 187  QRHRGYDRYRES-----QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
                 ++  RE      ++V+LA + + PLVATN++ +L   D   HDVL+ V   + V 
Sbjct: 175  M----HNALREQALANRELVRLARSEDFPLVATNDAHYLRRSDASWHDVLLCVQTQSTVQ 230

Query: 242  QKDRPRV-TPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
              DR R    D Y ++  EM S+F ++LP+AL NT EIA RC+  L +   +LP F   E
Sbjct: 231  TTDRYRFGADDFYFRSPEEMWSLFGAELPDALRNTQEIADRCNVKLTLGKYLLPEFPIPE 290

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               +    E  L  +A  GL  RL    I + Y      +RL +EL VI +M F GYF I
Sbjct: 291  GQTL----ETFLEKRAWEGLARRLGTQEIPEAYG-----ERLRYELGVIRQMGFPGYFCI 341

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VAD I  AK   IPVGPGRGS AGS+ A+AL IT++DPLR+ LLFERFLNP+R+SMPD D
Sbjct: 342  VADIITAAKGQGIPVGPGRGSAAGSLVAWALGITELDPLRYHLLFERFLNPERISMPDID 401

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
             D    RRDEV+ Y+  KYG +RV+QIITF  +++KAA+RDVGRAL MPYS VDR+ KL+
Sbjct: 402  TDISDKRRDEVLAYIVQKYGADRVSQIITFDRMKSKAAIRDVGRALAMPYSDVDRVAKLV 461

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P         +A+      ++    D  V +L+E +  +EG+ RH S HAAG+VI   PL
Sbjct: 462  PE--GVKTLGEALEKAPDLKQLSDQDLQVRQLIETASHIEGIARHCSQHAAGVVITPVPL 519

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDL 598
             ++VP+ R +  +  VTQ++M+ IE  GL+K DFLGL+TL++L+ +L + +A     +DL
Sbjct: 520  VEMVPVRR-IGENQVVTQYSMEPIEHLGLVKMDFLGLRTLSVLEDTLSNIVANHKPPLDL 578

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S IP DD ET+ +L    TLG+FQLESSGM+  L  ++PDC ED+IA+++LYRPGP+ + 
Sbjct: 579  SAIPMDDPETFDMLQRADTLGVFQLESSGMQDLLRRLRPDCFEDLIAVLALYRPGPLGSG 638

Query: 659  VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V  Y  RK+G+      HP ++  LKET GVI+YQEQVMQ A  L+GYSL EAD+LRRA
Sbjct: 639  MVEDYIERKHGRAVTQYPHPCLEKALKETYGVILYQEQVMQCAAELAGYSLGEADLLRRA 698

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  + M+KQ+ +F+ GA + G+    A  IF+ + KFA+YGFNKSH+AAYA+ISYQT
Sbjct: 699  MGKKKADVMEKQRSKFVDGARERGVDPVKAEEIFDSIEKFAEYGFNKSHSAAYALISYQT 758

Query: 777  AWMKTHYPVEFLAASM-TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            A++K HY  EFLAA + ++    ++ + ++ +  R     ++PP VN     F      I
Sbjct: 759  AYLKAHYGAEFLAAYLSSMVGARMDILGRYIRGVRDLGFPVLPPDVNESKAAFAAVGKVI 818

Query: 836  YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+ +  VG      I++A S   PF S  DF  RVD + +NR V+E+L+ AGA D  
Sbjct: 819  RFGLSGVGKVGEAAVDSILKARSEGGPFASFWDFLIRVDLRAVNRGVVENLIKAGAFDAL 878

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI----TLEKFSVENSSV 950
              +R QLL++L  + +  Q  ++       ++F  E+   +D +      E F V     
Sbjct: 879  WPNRRQLLENLPTLLEMGQ--KRAERGNQTSLFLEEQE--ADDVPPMEPCEDFEVRQ--- 931

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIRLAAMVVSKQQKKT 1009
            + + E+  LG Y SGHP +  +  +R        E      R     +  ++V  +++ T
Sbjct: 932  KLDFEKEALGLYISGHPFEQIEGRVRPYTTCSLAEVEHWQSRDTPPVVGGLLVGVKERYT 991

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            ++G  +G + F +   + E   FP
Sbjct: 992  KRGDPMGILEFEDTETKLETVCFP 1015


>gi|260495663|ref|ZP_05815787.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium sp.
           3_1_33]
 gi|260196846|gb|EEW94369.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium sp.
           3_1_33]
          Length = 1133

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/984 (38%), Positives = 593/984 (60%), Gaps = 53/984 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +FVHL +H+ YSL EG  S++N L K       ++A+TD  N+F A+EF QKA   GI+P
Sbjct: 4   NFVHLNLHTEYSLSEGVNSIDNFLIKAKELGMTSLAVTDYANMFCAVEFYQKAKKMGIKP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIG +L +  +D              + S+ LL     GY+ L++L S +Y  ++ ++ +
Sbjct: 64  IIGLELPVFNKDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRE-L 111

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-FKKLFG-DRLYVNLQ 187
           ++    L+E  ++ LI L+   +G I +A   NSS      ++  + ++F  +  Y+ +Q
Sbjct: 112 KLNKEILKEY-SQDLIALSSSINGEIGKAILTNSSDEKINSIINEYIEIFSKENFYLEIQ 170

Query: 188 RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            +   + +    ++  LA  + L LVATNN  ++  + YE  D+++ +     V +K+R 
Sbjct: 171 ANELTETKIINDKLYDLAEFYNLELVATNNVYYVDRDGYELQDIIICIQSGLKVKEKNRK 230

Query: 247 R-VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
           R ++ + YLK++ EM     +   +A+ENT  IA  C+  +       P +      ++ 
Sbjct: 231 RAISKELYLKSKDEMKRFLGEKFEKAIENTNHIASLCNVEITFGNLQFPYY------EVP 284

Query: 305 KEEENELRNKAVAGLEVRL---AQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFL 358
            E          +G++  L       I K Y     +D   RL++EL+VI +M +SGYF+
Sbjct: 285 SE---------YSGMDEYLKTICHTNIKKLYKEDLTKDILDRLEYELSVIIKMGYSGYFI 335

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           +V DFI +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD 
Sbjct: 336 VVWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDI 395

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           DID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+L KL
Sbjct: 396 DIDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKL 455

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
           I   P   +  + + ++    +    D  + ++++++ ++E   RH STHAAGI+I    
Sbjct: 456 IS--PFQTLE-KTLKENVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILITKED 512

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
           L + VP+Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VD
Sbjct: 513 LDRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVD 572

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           L  IP DD + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPGP+ +
Sbjct: 573 LYKIPLDDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQS 632

Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            +V  + NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRR
Sbjct: 633 GMVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRR 692

Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
           AMGKK    M + +E+FI  A KNG +   +  IFEL+ KFA YGFNKSH+ AYA+ISY 
Sbjct: 693 AMGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYW 752

Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
           TA+ K HYP  + AA MT E+     I  +  DA++  +++  P++N+P   F+V ++ I
Sbjct: 753 TAYFKVHYPAFYYAAVMTSEISETGDIAYYFNDAKEHGVRVYSPNINSPSAYFEVKNDGI 812

Query: 836 YYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            YSLAAIK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GALD  
Sbjct: 813 TYSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEI 872

Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFSVENSSVR 951
             +R +   S+D +  Y+    K    +  N+F     T  DK  L   E F+++    +
Sbjct: 873 KGNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKTI-DKFNLAISEDFTLDE---K 928

Query: 952 FENEQRVLGFYFSGHPLDVYKPIL 975
              E+  LGFY S HPLD YK I+
Sbjct: 929 LNKEKEFLGFYLSSHPLDRYKDII 952


>gi|326390936|ref|ZP_08212486.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW
            200]
 gi|325992978|gb|EGD51420.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW
            200]
          Length = 1145

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/1056 (37%), Positives = 620/1056 (58%), Gaps = 59/1056 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G+  + +++ K       AIAITD   ++  ++F ++A A GI+PI
Sbjct: 2    FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAQGIKPI 61

Query: 71   IGCQLDI---DMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IGC++ +    MQD    + N+          +VLL     GY+ L+++V+ +  ++   
Sbjct: 62   IGCEIYVAPRSMQDREYGIDNENY-------HLVLLAKDMTGYKNLMKIVT-VASIEGFY 113

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
               R+   +L+E  +EGLI L+   +G +         + A++  L +  +FG    Y+ 
Sbjct: 114  YKPRVDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLE 172

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H   ++ +   ++++L+    +PLVATN+  +L ++D +AH+VL+ +     +  +D
Sbjct: 173  LQDHGILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDED 232

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R     D  YLK+  EM ++FS   EA+ENT +IA  C+   + +   LP++   E  D 
Sbjct: 233  RMSFPTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDS 292

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +     LRN    GL  R            ++  +RLD+EL+VI +M +  YFLIV DF
Sbjct: 293  YEY----LRNLCYEGLYKRYKN-------PGKEVIERLDYELSVIKQMGYVDYFLIVWDF 341

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++AK N I  GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC
Sbjct: 342  IKFAKDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFC 401

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL  PY++VD + K+IP + 
Sbjct: 402  YERRQEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDTIAKMIPFEL 461

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A++ +   +     +  V +L++IS+ LEGL RHASTHAAG+VI   PL   V
Sbjct: 462  GMTID-KALSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYV 520

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+ ++   D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + + +GV +D   + 
Sbjct: 521  PLQKN--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVIIDFDSME 578

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +DD + Y L++   T G+FQLESSGM+Q +  ++P  +EDIIA +SLYRPGP+D I  Y 
Sbjct: 579  YDDLKVYELISKGETEGVFQLESSGMKQFMAELKPKNLEDIIAGISLYRPGPMDQIPRYL 638

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              +N  E IV  HPL+ P+L  T G ++YQEQVMQI + ++GYSL  +D++RRAM KK  
Sbjct: 639  ANRNHPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKM 698

Query: 723  EEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + M+++++ FI             GA +NG+ +  A  +F+ +  FA+Y FNKSHAAAYA
Sbjct: 699  DVMEQERKNFIYGIVDEEGNVIVPGALRNGLDEATANKLFDEMLDFANYAFNKSHAAAYA 758

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VI+YQTA++K +YPVEF+AA +   +DN++KI  + Q  ++  I+++PP +N     F V
Sbjct: 759  VIAYQTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVQVCKKMGIKVLPPDINESDSYFTV 818

Query: 831  GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +++I + L+A+K VG      I+ E   +  F S+ DF  R+   +LN++ +ESL+ AG
Sbjct: 819  VEDKIRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAG 878

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVE 946
            A   FG  R QLL   D + +  +    N  N   ++F       G   +   LE+F  +
Sbjct: 879  AFSSFGVRRSQLLSVYDKLMENIKKNRNNNLNGQISLFGEVEQSHGVEFEFPDLEEFP-K 937

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIR---GNNIRL 997
            N  +  E E   LG Y SGHPL+ Y   + K      +  K  EE +   +      + +
Sbjct: 938  NRLLSMEKE--TLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQEVVI 995

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            A ++ +K+ K T+  + + +VT  +     E   FP
Sbjct: 996  AGVIATKKIKFTKNNNMMAFVTIEDLYGTVEVIVFP 1031


>gi|167039837|ref|YP_001662822.1| DNA polymerase III DnaE [Thermoanaerobacter sp. X514]
 gi|300915388|ref|ZP_07132702.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307724839|ref|YP_003904590.1| DNA polymerase III subunit alpha [Thermoanaerobacter sp. X513]
 gi|166854077|gb|ABY92486.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X514]
 gi|300888664|gb|EFK83812.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307581900|gb|ADN55299.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X513]
          Length = 1145

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/1059 (37%), Positives = 621/1059 (58%), Gaps = 65/1059 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G+  + +++ K       AIAITD   ++  ++F ++A A GI+PI
Sbjct: 2    FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAQGIKPI 61

Query: 71   IGCQLDI---DMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IGC++ +    MQD    + N+          +VLL     GY+ L+++V+ +  ++   
Sbjct: 62   IGCEIYVAPRSMQDREYGIDNENY-------HLVLLAKDMTGYKNLMKIVT-VASIEGFY 113

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
               R+   +L+E  +EGLI L+   +G +         + A++  L +  +FG    Y+ 
Sbjct: 114  YKPRVDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLE 172

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H   ++ +   ++++L+    +PLVATN+  +L ++D +AH+VL+ +     +  +D
Sbjct: 173  LQDHGILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDED 232

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R     D  YLK+  EM ++FS   EA+ENT +IA  C+   + +   LP++   E  D 
Sbjct: 233  RMSFPTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDS 292

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +     LRN    GL  R    +       ++  +RLD+EL+VI +M +  YFLIV DF
Sbjct: 293  CEY----LRNLCYEGLYKRYKNPS-------KEVIERLDYELSVIEQMGYVDYFLIVWDF 341

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++AK N I  GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC
Sbjct: 342  IKFAKDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFC 401

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL   Y++VD + K+IP + 
Sbjct: 402  YERRQEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYLYAEVDVIAKMIPFEL 461

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A++ +   +     +  V +L++IS+ LEGL RHASTHAAG+VI   PL   V
Sbjct: 462  GMTID-KALSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYV 520

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+ ++   D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + + RGV +D   + 
Sbjct: 521  PLQKN--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVEKNRGVTIDFDSME 578

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +DD + Y L++   T G+FQLESSGM+Q +  ++P  +EDIIA +SLYRPGP+D I  Y 
Sbjct: 579  YDDPKVYELISKGETEGVFQLESSGMKQFMAELKPKNLEDIIAGISLYRPGPMDQIPRYL 638

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              +N  E IV  HPL+ P+L  T G ++YQEQVMQI + ++GYSL  +D++RRAM KK  
Sbjct: 639  ANRNHPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKM 698

Query: 723  EEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + M+++++ FI             GA +NG+ +  A  +F+ +  FA+Y FNKSHAAAYA
Sbjct: 699  DVMEQERKNFIYGIVDEEGNVIVPGALRNGLDEATANKLFDEMLDFANYAFNKSHAAAYA 758

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VI+YQTA++K +YPVEF+AA +   +DN++K+  + Q  R+  I+++PP +N     F V
Sbjct: 759  VIAYQTAYLKRYYPVEFMAALLNSFVDNLDKVAFYVQVCRKMGIKVLPPDINESDSYFTV 818

Query: 831  GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +++I + L+A+K VG      I+ E   +  F S+ DF  R+   +LN++ +ESL+ AG
Sbjct: 819  VEDKIRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAG 878

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT------FSDKITLEKF 943
            A   FG  R QLL + D + +  +    N  N   ++F   + T      F D   LE+F
Sbjct: 879  AFSSFGVRRSQLLSAYDKLMENIKKNRNNNLNGQISLFGEVEQTHGVGFEFPD---LEEF 935

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIR---GNN 994
                 S     E+  LG Y SGHPL+ Y   + K      +  K  EE +   +      
Sbjct: 936  P---KSRLLSMEKETLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQE 992

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +A ++ +K+ K T+  + + +VT  +     E   FP
Sbjct: 993  VVIAGVIATKKIKFTKNNNIMAFVTIEDLYGTVEVIVFP 1031


>gi|254672044|emb|CBA04625.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha275]
          Length = 991

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/974 (39%), Positives = 559/974 (57%), Gaps = 51/974 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4   PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
           PI    + I         N    PF      +L++    GY RL EL++  Y+  D+   
Sbjct: 64  PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           R      +    S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301
           PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +    D
Sbjct: 234 PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293

Query: 302 DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
           D   +  NE       GL+ R+ Q       +     +Y++RLDFELN+I +MKF GYFL
Sbjct: 294 DYLIKLSNE-------GLQERMVQLYPDEAERAAKMPEYQKRLDFELNIIIQMKFPGYFL 346

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           IV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KL
Sbjct: 407 DVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466

Query: 479 IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
           IP +   P+ L  A+  + + +E   A+   D L+ +++KLE L R    HA G++I   
Sbjct: 467 IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525

Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
            +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++     +AQ  +K  
Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580

Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
               VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYR
Sbjct: 581 TGDIVDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640

Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           PGP+DNI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD
Sbjct: 641 PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           +LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+
Sbjct: 700 LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
           ISYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F   
Sbjct: 760 ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819

Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            N +I Y+L AIKG G      I+ A  +   F  L +FC RV  + +NRR LE+L+  G
Sbjct: 820 PNMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLNFCERVGKEHMNRRTLEALIRGG 879

Query: 890 ALDCFGYSRMQLLQ----SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
           A D    +R  LL     ++DN  + A    +    +H+    H  G    +  +E+   
Sbjct: 880 AFDSIEPNRAMLLANIDLAMDNADQKAANANQGGLFRHDG-RRHRTGAAHRRADVERIG- 937

Query: 946 ENSSVRFENEQRVL 959
              + R +N  R+L
Sbjct: 938 --KTRRRKNRHRLL 949


>gi|291485359|dbj|BAI86434.1| DNA polymerase III DnaE [Bacillus subtilis subsp. natto BEST195]
          Length = 1115

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/1039 (38%), Positives = 603/1039 (58%), Gaps = 63/1039 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQVHS YSLL  A ++  ++ +       ++A+TD + ++ A++F +   A GI P
Sbjct: 2    SFVHLQVHSGYSLLNSAAAVEELVSEADRLGYASLALTDDHVMYGAIQFYKACKARGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    +   D         +     P +VLL  +  GYQ L+++ S +    Q K   
Sbjct: 62   IIGLTASVFTDD---------SELEAYP-LVLLAKSNTGYQNLLKISSVL----QSKSKG 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
             +   WL     EG+I +T G  G I+        + A +  L F+ +FG    Y + Q 
Sbjct: 108  GLKPKWLHSY-REGIIAITPGEKGYIETLLEGGLFEQAAQASLEFQSIFGKGAFYFSYQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
             +G ++    Q+++L+    +P+ AT +  ++ +ED  A+  L A+     ++  D P  
Sbjct: 167  FKG-NQVLSEQILKLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLT--DAPAE 223

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              PD  LK   EM +I+ + PEAL+ +VEIA +C   + +    LP F   +        
Sbjct: 224  DLPDLDLKPLEEMQNIYREHPEALQASVEIAEQCRVDVSLGQTRLPSFPTPDG----TSA 279

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++ L +  + GL  R        G   + Y +RL +EL+VI RMKFS YFLIV DF++ A
Sbjct: 280  DDYLTDICMEGLRSRF-------GKPDERYLRRLQYELDVIKRMKFSDYFLIVWDFMKHA 332

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I  GPGRGS AGS+ AY L ITD+DP++  LLFERFLNP+R+SMPD DIDF   RR
Sbjct: 333  HEKGIVTGPGRGSAAGSLVAYVLYITDVDPIKHHLLFERFLNPERVSMPDIDIDFPDTRR 392

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI+YVQ KYG   VAQIITFG+L AKAALRDVGR   +   + D+L KLIP+ P   +
Sbjct: 393  DEVIQYVQQKYGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPSRPGMTL 452

Query: 488  S---LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 Q+   D R RE+ L    + ++  I++K+EGL RHASTHAAG+V+ + PL+ +VP
Sbjct: 453  DEARQQSPQLDKRLRESSL----LQQVYSIARKIEGLPRHASTHAAGVVLSEEPLTDVVP 508

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPF 603
            + ++    + +TQ+ M  +E  GL+K DFLGL+ LTL++     +  +  +K+DLS I +
Sbjct: 509  L-QEGHEGIYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEKEENIKIDLSSISY 567

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D +T+ LL+   T GIFQLES+GMR  L+ ++P  +EDI+A+ +LYRPGP++NI ++ +
Sbjct: 568  SDDKTFSLLSKGDTTGIFQLESAGMRSVLKRLKPSGLEDIVAVNALYRPGPMENIPLFID 627

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+  +   H  +  +L++T GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ KK KE
Sbjct: 628  RKHGRAPVHYPHEDLRSILEDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKKKE 687

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +D+++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I  Q A++K HY
Sbjct: 688  ILDRERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHY 747

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P+ F+   +T  + N +KI ++  +A+   I+I+PPSVN     F V +  + YSL AIK
Sbjct: 748  PLYFMCGLLTSVIGNEDKISQYLYEAKGSGIRILPPSVNKSSFPFTVENGSVRYSLRAIK 807

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
             VG +  + I +A  +KPF+ L DFC RV SK +NR++LE+L+F+GA+D FG +R  LL 
Sbjct: 808  SVGVSAVKDIYKARKEKPFEDLFDFCFRVPSKSVNRKMLEALIFSGAMDEFGQNRATLLA 867

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN--------- 954
            S+D   ++A+    +           + G F D    E FS++   V  E          
Sbjct: 868  SIDVALEHAELFAADDD---------QMGLFLD----ESFSIKPKYVETEELPLVDLLAF 914

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LG YFS HPL  ++  L   G     ++   ++   + L  ++   +  +T+ G  
Sbjct: 915  EKETLGIYFSNHPLSAFRKQLTAQGAVSILQAQRAVK-RQLSLGVLLSKIKTIRTKTGQN 973

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + ++T S+   E EA  FP
Sbjct: 974  MAFLTLSDETGEMEAVVFP 992


>gi|154148261|ref|YP_001407070.1| DNA polymerase III subunit alpha [Campylobacter hominis ATCC BAA-381]
 gi|153804270|gb|ABS51277.1| DNA polymerase III subunit alpha [Campylobacter hominis ATCC BAA-381]
          Length = 1213

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/1062 (37%), Positives = 607/1062 (57%), Gaps = 66/1062 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+G   ++N+   +      A+AITD  N+F A+EF +     GI+PI
Sbjct: 4    FTHLHLHTEYSLLDGVNKIDNLAKILKERGTKAVAITDHGNMFGAIEFYKTMKKNGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  I   D L      K  F     ++LL     GY+ LI L S+ +L D      R
Sbjct: 64   IGMEAYIHNHDKLD-DKSDKQRF----HLILLAKNEIGYKNLIYLSSKAFL-DGFYYYPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-----------AEKRLLTFKKLFG 179
            I  + L+    EG+I      +G I   F  N S+            A+K  L +K++FG
Sbjct: 118  INKNLLRA-HHEGIICNAACIAGEI--GFHLNLSERNIKRGAKGYEGAKKAALEYKEIFG 174

Query: 180  DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            D  Y+ + RH    + R +  +++L+    + L+A+N++ + ++  ++  D+ + ++  +
Sbjct: 175  DDFYLEIMRHGYTSQLRIDDDLIRLSRETGIKLIASNDAHYTNQAGHDLQDIFVCLSTGS 234

Query: 239  VVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----HAPILP 293
            V+S   R   T    Y+K   EM  IF+D+PE +ENT EIA +C+         + P  P
Sbjct: 235  VLSDPKRMHHTVRQLYVKTDEEMKEIFADIPEVIENTQEIANKCNLSFAFDDPNYHPTAP 294

Query: 294  --RFIEKECDDI-----QKEEENELRNKAVA-------GLEVRLAQGAIAKGYHAQDYRQ 339
              +F  ++ + I     +  EE   +N  +        GL  RL    IA   H + Y+ 
Sbjct: 295  NFKFTREKANLINLTLPEANEEYSKKNDDLLFETLCRDGLTKRLE--FIAPEKH-EIYKA 351

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL+ E+ +I +M F GY LIV DFI WAK ++IPVGPGRGS AGS+ AY+L ITD+DP+ 
Sbjct: 352  RLEKEIQIIEKMGFGGYMLIVQDFINWAKDHDIPVGPGRGSAAGSLCAYSLRITDLDPIP 411

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            ++LLFERFLNPDR+SMPD D+DF Q RR+EV  YV NKYG E VAQ+ TFG L A+  +R
Sbjct: 412  YNLLFERFLNPDRISMPDIDVDFAQARREEVFEYVSNKYGKENVAQVATFGKLLARGVIR 471

Query: 460  DVGRALQMPYSQVDRLCKLIP-------NDPAHPVSLQ----AIADDSRFREARLADPSV 508
            DV R  +MP  + D + KL+P       N    P S +    A   + + ++    DP  
Sbjct: 472  DVARVCEMPLYKADAMAKLVPEQLGITLNGEGEPGSEKYKPGAFQLEPKIKDLVEQDPLA 531

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKA 566
             ++ + S  LEGL R+   HAAG+VI + PL   VP++R  +SD    +TQ+   ++E  
Sbjct: 532  KKVWDYSLGLEGLNRNTGMHAAGVVISNDPLWNKVPLFRQTKSDDGHYITQYTKLYLEDV 591

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
             LIKFDFLGLK L ++  ++  + +R  K +    I F+D +TY  + +  T GIFQ+ES
Sbjct: 592  DLIKFDFLGLKNLDVIANAIKLIKRRYNKDIVWENIDFNDKKTYETIQSGNTFGIFQIES 651

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
             GM++   G++PDC EDIIA++S++RPGP++ I  +  RK+G+ K+  I P I  +L+ T
Sbjct: 652  PGMQKLATGLKPDCFEDIIAMISIFRPGPMELIPDFIARKHGEAKVEYIMPEIKEILEPT 711

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+I+YQEQVMQI Q + G+SL EAD++RRAM KK ++++   +E+++ GA K G     
Sbjct: 712  YGIIVYQEQVMQIVQKIGGFSLGEADLVRRAMSKKDEKKLAHMREQYLDGAKKLGFDTNK 771

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A  +F+L+ KFA YGFNKSHAAAY++I++QTA++KT+YP EF+AA +T E  N +K+  +
Sbjct: 772  ANELFDLIMKFASYGFNKSHAAAYSMITFQTAYLKTYYPAEFMAALLTSEESNADKVLTY 831

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNR-------IYYSLAAIKGVGTTTARHIMEASA 858
              +A++  I I+PPS+N    +F V D+        I Y L AIKGVG     +I+E   
Sbjct: 832  IDEAKRLGITILPPSINKSIREFSVTDDENAPSKTAIIYGLGAIKGVGLAGIENIIELRD 891

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
            +KPF++++DF SRVD+ K+N++V+E+L  AGA+DC G +R  LLQ+ +NI    +     
Sbjct: 892  EKPFETIDDFASRVDNFKVNKKVIEALTCAGAMDCLGKTRKALLQNSENIVDAMKKAAIL 951

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
            R     ++   ++  F  K+  E    E       + EQ+ +G Y SGHPLD +K  +  
Sbjct: 952  RDEATSSLNFGDESFFDIKVNFEDTKEEFKRKELLKLEQQSIGIYLSGHPLDDFKDEISS 1011

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            +      +   T  G  I     + S  +K T+ G ++G ++
Sbjct: 1012 INYTSTTDFENTDDG-EILCVGKIESITKKITKSGKQMGIIS 1052


>gi|313893027|ref|ZP_07826604.1| putative DNA polymerase III subunit alpha [Veillonella sp. oral taxon
            158 str. F0412]
 gi|313442380|gb|EFR60795.1| putative DNA polymerase III subunit alpha [Veillonella sp. oral taxon
            158 str. F0412]
          Length = 1135

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/1015 (37%), Positives = 616/1015 (60%), Gaps = 39/1015 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +SLL+G   L +++ +     QPA+AITD  N+++A+ F ++  A G++PI
Sbjct: 4    FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY---LLDQGKQ 127
            IGC++ +          +G++    +  ++LL  T EGY+ L+++VS+     +L + + 
Sbjct: 64   IGCEVYVTEHSRFDRP-EGRSR-ERLKHLILLAETMEGYRNLVKIVSKASTEGMLYRPRA 121

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
               +   +     ++G+I L+    G I +    ++ + A++ +  + + +G D  ++ +
Sbjct: 122  DRDLLRQY-----SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEI 176

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   +  + + ++++L+  + L +VA+N+  ++ +ED +A D+ + ++     ++ DR
Sbjct: 177  QNHGLTEEAKAQEELIKLSKEYGLGVVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDR 236

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             +   D  YLK+  EM  +FS +P A+ENT++IA RC+         LP F      D+ 
Sbjct: 237  LKFPNDEFYLKSGDEMAQLFSHIPGAIENTLKIADRCNVEFNFDEHHLPHF------DVP 290

Query: 305  KEEENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            + E ++   + V   E+ RL       G  +++ ++RLD+EL+VI  M F  YFLIV D+
Sbjct: 291  EGETSKTYLRKVCEREIPRLY------GETSEELQKRLDYELDVIGTMGFEDYFLIVWDY 344

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC
Sbjct: 345  VRYAREHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFC 404

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++R + I YV  KYG ERV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+ 
Sbjct: 405  YEKRGKAIEYVTRKYGQERVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNEL 464

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++L         +    ADP+V  L +  +KLEG+ R++STHAAG+VI   PL   V
Sbjct: 465  G--ITLDKALQGKELKALYEADPNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHV 522

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
            P+ ++   +  VTQ++   IE+ GL+K DFLGL+TLT++  +L  + A RG+ +DL  IP
Sbjct: 523  PV-QNANDEGFVTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIP 581

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD     +LT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +V  
Sbjct: 582  LDDKAACDILTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVAD 641

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + +R++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK
Sbjct: 642  FIDRRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKK 701

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             +  +  Q+E FI G+  NGI ++IA  +F+LL  FA YGFNKSH+AAYA I+YQTA++K
Sbjct: 702  KESVLKAQRESFIQGSINNGIEESIANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLK 761

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HY  EF+AA+MT  M N++K+  +    ++ N++++ P +N     F V  + I + L 
Sbjct: 762  AHYFPEFMAATMTSFMQNMQKLTYYINACKKHNVKVLGPDINYSERSFAVQGDAIRFGLG 821

Query: 841  AIKGVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK VG     R I E +    +  + DFC RVD+K +N+R+LESL+  GA+D F  +R 
Sbjct: 822  GIKNVGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGAMDGFKENRN 881

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
            QLL   ++ Q      +K+      ++F    E   F     +E  S ++   + ++E+ 
Sbjct: 882  QLLHMYESAQAVGAKEQKDAAMGTMSLFGDIEESVDFIAVPNVEDLSEDD---KLKDEKE 938

Query: 958  VLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
              GFY +GHPL  Y   L  +  +    E+     G  I    ++ +K  + TR+
Sbjct: 939  YTGFYITGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKTDRMTRR 993


>gi|16079975|ref|NP_390801.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310864|ref|ZP_03592711.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315190|ref|ZP_03596995.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str. NCIB
            3610]
 gi|221320107|ref|ZP_03601401.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str.
            JH642]
 gi|221324389|ref|ZP_03605683.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str. SMY]
 gi|6166145|sp|O34623|DPO3A_BACSU RecName: Full=DNA polymerase III subunit alpha
 gi|2293260|gb|AAC00338.1| DNA-polymerase III alpha-chain [Bacillus subtilis]
 gi|2635388|emb|CAB14883.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp. subtilis
            str. 168]
          Length = 1115

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/1039 (38%), Positives = 603/1039 (58%), Gaps = 63/1039 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQVHS YSLL  A ++  ++ +       ++A+TD + ++ A++F +   A GI P
Sbjct: 2    SFVHLQVHSGYSLLNSAAAVEELVSEADRLGYASLALTDDHVMYGAIQFYKACKARGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    +   D         +     P +VLL  +  GYQ L+++ S +    Q K   
Sbjct: 62   IIGLTASVFTDD---------SELEAYP-LVLLAKSNTGYQNLLKISSVL----QSKSKG 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
             +   WL     EG+I +T G  G I+        + A +  L F+ +FG    Y + Q 
Sbjct: 108  GLKPKWLHSY-REGIIAITPGEKGYIETLLEGGLFEQAAQASLEFQSIFGKGAFYFSYQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
             +G ++    Q+++L+    +P+ AT +  ++ +ED  A+  L A+     ++  D P  
Sbjct: 167  FKG-NQVLSEQILKLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLT--DAPAE 223

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              PD  LK   EM +I+ + PEAL+ +VEIA +C   + +    LP F   +        
Sbjct: 224  DLPDLDLKPLEEMQNIYREHPEALQASVEIAEQCRVDVSLGQTRLPSFPTPDG----TSA 279

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++ L +  + GL  R        G   + Y +RL +EL+VI RMKFS YFLIV DF++ A
Sbjct: 280  DDYLTDICMEGLRSRF-------GKPDERYLRRLQYELDVIKRMKFSDYFLIVWDFMKHA 332

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I  GPGRGS AGS+ AY L ITD+DP++  LLFERFLNP+R+SMPD DIDF   RR
Sbjct: 333  HEKGIVTGPGRGSAAGSLVAYVLYITDVDPIKHHLLFERFLNPERVSMPDIDIDFPDTRR 392

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI+YVQ KYG   VAQIITFG+L AKAALRDVGR   +   + D+L KLIP+ P   +
Sbjct: 393  DEVIQYVQQKYGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPSRPGMTL 452

Query: 488  S---LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 Q+   D R RE+ L    + ++  I++K+EGL RHASTHAAG+V+ + PL+ +VP
Sbjct: 453  DEARQQSPQLDKRLRESSL----LQQVYSIARKIEGLPRHASTHAAGVVLSEEPLTDVVP 508

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPF 603
            + ++    + +TQ+ M  +E  GL+K DFLGL+ LTL++     +  +  +K+DLS I +
Sbjct: 509  L-QEGHEGIYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEKEENIKIDLSSISY 567

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D +T+ LL+   T GIFQLES+GMR  L+ ++P  +EDI+A+ +LYRPGP++NI ++ +
Sbjct: 568  SDDKTFSLLSKGDTTGIFQLESAGMRSVLKRLKPSGLEDIVAVNALYRPGPMENIPLFID 627

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+  +   H  +  +L++T GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ KK KE
Sbjct: 628  RKHGRAPVHYPHEDLRSILEDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKKKE 687

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +D+++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I  Q A++K HY
Sbjct: 688  ILDRERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHY 747

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P+ F+   +T  + N +KI ++  +A+   I+I+PPSVN     F V +  + YSL AIK
Sbjct: 748  PLYFMCGLLTSVIGNEDKISQYLYEAKGSGIRILPPSVNKSSFPFTVENGSVRYSLRAIK 807

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
             VG +  + I +A  +KPF+ L DFC RV SK +NR++LE+L+F+GA+D FG +R  LL 
Sbjct: 808  SVGVSAVKDIYKARKEKPFEDLFDFCFRVPSKSVNRKMLEALIFSGAMDEFGQNRATLLA 867

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN--------- 954
            S+D   ++A+    +           + G F D    E FS++   V  E          
Sbjct: 868  SIDVALEHAELFAADDD---------QMGLFLD----ESFSIKPKYVETEELPLVDLLAF 914

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LG YFS HPL  ++  L   G     ++   ++   + L  ++   +  +T+ G  
Sbjct: 915  EKETLGIYFSNHPLSAFRKQLTAQGAVSILQAQRAVK-RQLSLGVLLSKIKTIRTKTGQN 973

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + ++T S+   E EA  FP
Sbjct: 974  MAFLTLSDETGEMEAVVFP 992


>gi|46203696|ref|ZP_00051135.2| COG0587: DNA polymerase III, alpha subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 538

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/534 (60%), Positives = 420/534 (78%), Gaps = 5/534 (0%)

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
           ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLNP+R+SMPDFDIDFC + R+ 
Sbjct: 2   HDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLNPERVSMPDFDIDFCVEGRER 61

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
           VIRYVQ +YG  +V QIITFG+L A+  LRDVGR L+MPY QVD+L KL+P +PA+PV+L
Sbjct: 62  VIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVLEMPYGQVDKLTKLVPQNPANPVTL 121

Query: 490 -QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            QAI  + + ++A   +P V RL+EIS+KLEGL+RHASTHAAG+VIGDRPL +LVP+YRD
Sbjct: 122 AQAIEGEPKLQQAIQEEPIVARLIEISKKLEGLHRHASTHAAGVVIGDRPLEELVPLYRD 181

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
            ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+   D L QRG++VDL+ IP DD +T
Sbjct: 182 PKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRCCTDLLKQRGIEVDLAQIPLDDPKT 241

Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
           Y  +    T+ +FQ+ES+GMR+AL  MQ D +EDIIALV+LYRPGP+ NI VY  RK G+
Sbjct: 242 YEPMGRGETVAVFQVESAGMRKALCEMQADRLEDIIALVALYRPGPMANIPVYCERKLGR 301

Query: 669 ----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
               E     HP+++P+L+ET G+I+YQEQVM++A++L+GY+L EAD+LRRAMGKKIK E
Sbjct: 302 DAGNEASWYPHPMLEPILRETFGIIVYQEQVMEVAKVLAGYTLGEADMLRRAMGKKIKAE 361

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           MD Q++RF+ G  ++GI +  A  IF+LLAKFADYGFNKSHAAAYA+++YQTA++K +YP
Sbjct: 362 MDAQRDRFVKGCLESGIPQAKANEIFDLLAKFADYGFNKSHAAAYALVTYQTAYLKANYP 421

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
           VEFLAA+MTL++DN +K+ +F QDA++  I + PPSVNT  V F V + RI Y+LAAIKG
Sbjct: 422 VEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPSVNTSGVVFDVKEGRILYALAAIKG 481

Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
           VG      I+ A  DKPF  L  F  R++ + +N+R LE+L+ AGALDC    R
Sbjct: 482 VGRAAVESIVAARGDKPFKDLACFARRLNPRHVNKRTLENLIAAGALDCIEPDR 535


>gi|296274562|ref|YP_003657193.1| DNA polymerase III subunit alpha [Arcobacter nitrofigilis DSM 7299]
 gi|296098736|gb|ADG94686.1| DNA polymerase III, alpha subunit [Arcobacter nitrofigilis DSM
           7299]
          Length = 1180

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/1003 (38%), Positives = 589/1003 (58%), Gaps = 51/1003 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P F HL +H+ YSLL+GA  + ++  KI A    ++A+TD  N+F A++F +   A GI+
Sbjct: 5   PEFTHLHLHTEYSLLDGANKIKDLAKKIKALGMKSVAMTDHGNMFGAIDFYKAMKAEGIK 64

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PIIG +  I   + L   +  K        + L      GY+ L+ L S+ Y+   G   
Sbjct: 65  PIIGMEAYIHNSEELDDKSHRKRF-----HLCLYAKNQVGYKNLMFLTSQAYM--HGFYY 117

Query: 129 V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS----------QVAEKRLLTFKKL 177
             RI    L+E  +EGL+       G ++      S           + A++  L +K++
Sbjct: 118 YPRINKKILRE-NSEGLVCSAACLQGEVNWHLNTQSERNVKNGAKGYEEAKRIALEYKEI 176

Query: 178 FGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
           FGD  Y+ + RH   D+ + + Q+++++    + +VATN++ +L ++D +AH+  M +A 
Sbjct: 177 FGDDFYLEIMRHGISDQHFIDDQILRISKETGIKVVATNDTHYLKQKDAQAHEAFMCIAM 236

Query: 237 STVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
           + +    +R R +  + YLK+  ++  +++D+PE +  T EI  +C+  +++  P  P F
Sbjct: 237 NKLYDDPNRLRHSVHEFYLKSSEQISKLYADIPETIAATQEIVEKCNLEIKLGDPTPPNF 296

Query: 296 I---EKECDD----IQKEEENELRNKAV-------AGLEVRLAQGAIAKGYHAQDYRQRL 341
               EK  ++     + E E  L N  +        GLE RL    I      Q+Y+ RL
Sbjct: 297 KFTREKSQEEGLTLPEPELEYSLENDKILFVHECWKGLEKRLE---IVPQERHQEYKDRL 353

Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
             E+++I  MKF GY LIV DF+  AK+  IPVGPGRGS AGS+ A++L ITDIDPL + 
Sbjct: 354 QVEIDIINSMKFPGYMLIVWDFVIAAKQMKIPVGPGRGSAAGSLVAFSLAITDIDPLPYG 413

Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
           LLFERFLNP+R+SMPD D+DFCQ RR E++ YV  KYG   VAQIITFG L AK  +RDV
Sbjct: 414 LLFERFLNPERVSMPDIDMDFCQARRQEILDYVIEKYGRANVAQIITFGKLLAKGVIRDV 473

Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            R L MPYSQ D + KLIP++    ++  +   + + +E   ++P   R+ + +  LEGL
Sbjct: 474 ARVLDMPYSQADAMAKLIPDELGINLT-SSYEKEPKIKELCDSNPQAKRVWDFAIALEGL 532

Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
            R+A THAAG+VI + PL    P+++    +   TQ+N K++E   LIKFDFLGLKTLT+
Sbjct: 533 NRNAGTHAAGVVISNEPLWNKTPLFKPSGMETLATQYNGKYVEDVDLIKFDFLGLKTLTV 592

Query: 582 LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           ++++   + QR G +V+   +  +D   Y L+ T  T+G+FQ+ES GM+   + ++P   
Sbjct: 593 IEEANKLIEQRHGKRVNFLTVDVNDKGVYDLIQTGNTIGLFQIESDGMQDLCKRLKPSNF 652

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLID----PMLKETQGVIIYQEQ 694
           EDIIA+++LYRPGP+++ ++  + +RK+G+E+I   +   D    P+L+ T GVI+YQEQ
Sbjct: 653 EDIIAVLALYRPGPMESGMLDDFIDRKHGREEINYFYDEFDAPLRPILETTYGVIVYQEQ 712

Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
           VMQI Q + G+SL  AD++RRAMGKKIKEEMD+ K  F  G  K G  K     +F+L+ 
Sbjct: 713 VMQIVQTIGGFSLGGADLVRRAMGKKIKEEMDRLKGEFAIGGVKKGFVKEHCEELFDLIV 772

Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
           KFA YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE DN +K+ K+  + ++  +
Sbjct: 773 KFAGYGFNKSHSAAYALVTFYTSYLKKYYPSEFMAALLTLEKDNTDKVVKYVDEVKRLKL 832

Query: 815 QIMPPSVNTPCVDF---KV-GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFC 869
            + PP +N   + F   K+ G   + + + AIKG G    + I+ E + +  F+   DF 
Sbjct: 833 DLFPPDINKSDLVFAPKKIDGQEVVMFGMGAIKGAGDVAIKSILKERNENGNFEDFADFI 892

Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
           SRVD  K+N+RV ESL  AG  D FGYSR  +L+ ++ I +        +     ++F  
Sbjct: 893 SRVDGSKVNKRVFESLAKAGGFDTFGYSRRSILEQIETINETVGKAMAAKKMATGSLFGD 952

Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
            K     ++ LEKF         E E++ LGFY SGHPLD Y+
Sbjct: 953 SKELTKVEVQLEKFEEYELKELLELEKQSLGFYVSGHPLDEYR 995


>gi|34558271|ref|NP_908086.1| DNA polymerase III subunit alpha [Wolinella succinogenes DSM 1740]
 gi|34483990|emb|CAE10986.1| DNA POLYMERASE III ALPHA SUBUNIT [Wolinella succinogenes]
          Length = 1178

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/1047 (36%), Positives = 608/1047 (58%), Gaps = 50/1047 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  + HL +H+ YSLL+GA  + ++  K+      A+++TD  N+F A++F       G+
Sbjct: 2    SYPYTHLHLHTEYSLLDGANKIKSLAKKVKQLGMSAVSMTDHGNMFGAIDFYTAMKKEGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG +  +   D L     G         + L      GYQ L+ L S M  ++    
Sbjct: 62   KPIIGIEAYLHNSDEL-----GDKSTKQRFHLCLYAKNEVGYQNLMYL-SSMSFIEGFYY 115

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS----------QVAEKRLLTFKKL 177
              RI    L+E  +EGL+  +    G +      NS           + A++  L ++++
Sbjct: 116  YPRINKKLLRE-HSEGLVCSSACLQGEVQWHLNTNSERNVKFGAKGYERAKEVALEYREI 174

Query: 178  FGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            FG+  Y+ + RH  G   + +  +++L+    + ++ATN++ +  +ED EAH+  M +A 
Sbjct: 175  FGEDFYLEIMRHGIGDQLFIDEPLLRLSLETGIKIIATNDTHYQLQEDAEAHEAFMCIAM 234

Query: 237  STVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
            +   +  +R R +  + YLK+  +M  +F+D+PEAL NT EI  +C+  L +  P  P F
Sbjct: 235  NKNFNDPNRLRHSVQEFYLKSPEQMEELFADIPEALLNTQEIVEKCNLELHLGNPTPPTF 294

Query: 296  IEKECDDIQKEE-------ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              K  +D  K E       ++    K   GL+ RL      +    ++  +R    +N  
Sbjct: 295  --KFTEDYAKAEGLDFHTDDDYFAYKCREGLKKRLKLVPETRHEEYRERLEREIEIIN-- 350

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +MKF GY LIV DF++ AK   IPVGPGRGS AGS+ A+ L ITDIDPL+++LLFERFL
Sbjct: 351  -KMKFPGYMLIVWDFVRAAKDRGIPVGPGRGSAAGSLVAFCLEITDIDPLKYALLFERFL 409

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DFCQ RR E++ YV NKYG   VAQ+ITFG+LQAK  +RDV R + MP
Sbjct: 410  NPERVSMPDIDMDFCQSRRGEILDYVVNKYGRYNVAQVITFGTLQAKGVIRDVARVMGMP 469

Query: 469  YSQVDRLCKLIPNDPAHPVSLQ-----------AIADDSRFREARLADPSVDRLLEISQK 517
            Y + D + KLIP++    ++ +           A   + + +E   ++    ++ E +  
Sbjct: 470  YGEADAMAKLIPDELGITLNGKGKEGTPDYKAGAFQKEPKIKELIDSNKEARKVWEFALL 529

Query: 518  LEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            LEGL R+A THAA +VI   + L    P+Y+    +   TQ++MK++E   LIKFDFLGL
Sbjct: 530  LEGLKRNAGTHAAAVVIDSQKELWHKAPLYKPSGDETIATQYSMKYLEDVDLIKFDFLGL 589

Query: 577  KTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            KTLT+++ ++D +  R  K +D + +  +D   Y  + +  T+G+FQ+ES GM+   + +
Sbjct: 590  KTLTVIRGAMDMIKVRYSKEIDFNALDVNDPAVYETIQSGNTIGLFQVESKGMQDLNKRL 649

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
            +P   EDIIA+++LYRPGP+++ ++  + +RK+GK  I+   P ++P+LK T GVI+YQE
Sbjct: 650  KPTTFEDIIAVLALYRPGPMESGMLDDFIDRKHGKAPILYAFPELEPILKPTYGVIVYQE 709

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQI Q + G+SL  AD++RRAMGKKIKEEMD+ K  F +GA K G  +  +  +F+L+
Sbjct: 710  QVMQIVQTIGGFSLGGADLVRRAMGKKIKEEMDRLKGEFANGAEKRGFDRQKSEELFDLI 769

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSH+AAYA++++QT ++KT+YP EF+A+ +T E DN +K+ K+  +A++  
Sbjct: 770  VKFAGYGFNKSHSAAYAMVTFQTTYLKTYYPHEFMASLLTSEQDNTDKVVKYVDEAKRLG 829

Query: 814  IQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
            I+++PP ++   ++F V    G+  I + L AIKG G      I+E  A  PF++LEDF 
Sbjct: 830  IKVLPPDISRSLLEFSVAEIEGEKVILFGLGAIKGAGEIALSKILEERAKAPFENLEDFL 889

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             R+D++K+N++ LESL+ +G++  FGYSR  LL+ ++ I + ++  E+ +     ++F  
Sbjct: 890  GRIDAQKVNKKALESLIKSGSMVGFGYSRRALLEQIEAINEASKESERAKRMAENSLFGD 949

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
             +     ++ +E F         E E+  LGFY SGHPLD ++P L ++      +    
Sbjct: 950  SEEMIVARVEIENFEEYPLKRLLELEKETLGFYVSGHPLDDFRPELAEVNYTLSSQMEQI 1009

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              G+       V     K ++KG+R G
Sbjct: 1010 EDGSAALFIGKVEEVTTKFSKKGNRFG 1036


>gi|93006042|ref|YP_580479.1| DNA polymerase III, alpha subunit [Psychrobacter cryohalolentis K5]
 gi|92393720|gb|ABE74995.1| DNA polymerase III, alpha subunit [Psychrobacter cryohalolentis K5]
          Length = 1247

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/1013 (38%), Positives = 597/1013 (58%), Gaps = 72/1013 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +FVHL +HS YS+ +  + +  ++   AAD Q A+A+TD +NL++ ++F +    AGI+P
Sbjct: 2   AFVHLGIHSEYSITDSIVRIKPLVKAAAADNQSALALTDLSNLYATVKFYRACLGAGIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS------RMYLLD 123
           IIG ++ ++ +D                 + LL    EGYQ +  +VS      R   ++
Sbjct: 62  IIGSEVIMENEDT---------------RLTLLAMNNEGYQNITRIVSLGFTEGRADPVN 106

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            G   ++         G   +++ T  S   + +A   +  + A++ L  ++  F DRLY
Sbjct: 107 HGTPVIKRSHILAHAAGV--IVLFTEKSD--VGQALIGSMPEKADELLTEWQAQFADRLY 162

Query: 184 VNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
             ++R    G D + ++ +   A  H +P++A N+  FL ++D++AH+  + +A S V++
Sbjct: 163 FAIKRTNRTGEDAFIKAAIHSGA-KHHIPIIAHNDVRFLEQDDFDAHEARVCIAGSYVLA 221

Query: 242 QKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            ++RP+   D  YLK +++M  +F+D+P+ ++NT+ +A RC+  L +   +LP F   E 
Sbjct: 222 DQNRPQTYSDAQYLKTQAQMEQLFADIPQVIDNTLRLATRCNVSLTLGINVLPEFPVPEG 281

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQ--GAIAKGYHAQDYRQR----LDFELNVIARMKFS 354
           +      E+  R ++  GL+ RL +     A+  +  D RQR    L++EL VI  M F 
Sbjct: 282 E----TTESFFRLESQRGLDNRLDKLFPVDARSDNWSDIRQRYDDRLEYELKVILSMGFP 337

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
           GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLNP+R+S
Sbjct: 338 GYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYALNITDLDPIHYDLLFERFLNPERVS 397

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           MPDFDIDFC + RD VI YV   YG E V+QIITFG++ AKA +RDV RA    Y    +
Sbjct: 398 MPDFDIDFCIEGRDRVIDYVAQTYGREAVSQIITFGTMAAKAVVRDVARAQSKSYFLASK 457

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD-----RLLEISQKLEGLYRHASTHA 529
           + KLIP  P   +S QA+  + + ++      ++D      + E++ KLEG+ R+   HA
Sbjct: 458 MSKLIPKTPGITLS-QALEQEPQLKDLISNPDNMDYEDAIEVWEMAIKLEGICRNVGKHA 516

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G++I    ++    +Y D      V+QF+   +E  GL+KFDFLGL+ LT++  ++  +
Sbjct: 517 GGVLIAPHRITDFSAIYCDDEGHR-VSQFDKDDVEAVGLVKFDFLGLRNLTVIDAAVRNI 575

Query: 590 AQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
             R  K     + L  +P DD + Y LL    T  +FQLES GM++ L  +QP  IED+I
Sbjct: 576 NLRRAKEGKDALVLEDLPLDDAKAYKLLQDAKTTAVFQLESMGMKKYLAKLQPTNIEDVI 635

Query: 645 ALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
           A+ +LYRPGP+D  +V  Y +RK+G+E+++  HP ++P+L+ T GVI+YQEQVMQI+Q++
Sbjct: 636 AMCALYRPGPLDAGMVEMYIDRKHGREEVIYDHPNLEPILENTNGVIVYQEQVMQISQVM 695

Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
           +GYSL  AD+LRRAMGKK  EEM KQ++ F++GA+  GI +  +  +F+L+ KFA YGFN
Sbjct: 696 AGYSLGGADMLRRAMGKKKPEEMAKQRDIFVTGATAQGIDEATSGGVFDLMEKFAGYGFN 755

Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821
           +SH+AAY V++YQTA++K +YP EF+AA +T +M+N + +  F  D R+ F++ ++ PSV
Sbjct: 756 RSHSAAYGVLAYQTAYLKQYYPAEFMAAVLTSDMNNTDNVVFFINDCRENFDLTVVNPSV 815

Query: 822 NTPCVDFKVGD--NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLN 878
           N     F V D    I Y L AIKGVG      I++A   + PF  L DFC RVD KK+N
Sbjct: 816 NRSEWHF-VADTPTNIIYGLGAIKGVGEGAVESIVDARRREGPFKDLYDFCRRVDIKKVN 874

Query: 879 RRVLESLVFAGALDCFGYS-------------RMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
           +R LE+LV AG  D F  +             R  L+  L +  + A+   +NR     +
Sbjct: 875 KRTLEALVSAGCFDDFAATLRPDLPADEAYEIRGALMSQLPSAVQAAEQDRQNREIGMMD 934

Query: 926 IFAHEKGTF-SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
           +F    G   +  + +    +     R + E+  LG Y +GHP+D Y+  L++
Sbjct: 935 LFGEMDGVVAAPPLVMTPELIWGDKHRLKAEKNTLGLYLTGHPIDEYRDELKR 987


>gi|321312457|ref|YP_004204744.1| DNA polymerase III DnaE [Bacillus subtilis BSn5]
 gi|320018731|gb|ADV93717.1| DNA polymerase III DnaE [Bacillus subtilis BSn5]
          Length = 1115

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/1039 (38%), Positives = 602/1039 (57%), Gaps = 63/1039 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQVHS YSLL  A ++  ++ +       ++A+TD + ++ A++F +   A GI P
Sbjct: 2    SFVHLQVHSGYSLLNSAAAVEELVSEADRLGYASLALTDDHVMYGAIQFYKACKARGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    +   D         +     P +VLL  +  GYQ L+++ S +    Q K   
Sbjct: 62   IIGLTASVFTDD---------SELEAYP-LVLLAKSNTGYQNLLKISSVL----QSKSKG 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
             +   WL     EG+I +T G  G I+        + A +  L F+ +FG    Y + Q 
Sbjct: 108  GLKPKWLHSY-REGIIAITPGEKGYIETLLEGGLFEQAAQASLEFQSIFGKGAFYFSYQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
             +G ++    Q+++L+    +P+ AT +  ++ +ED  A+  L A+     ++  D P  
Sbjct: 167  FKG-NQVLSEQILKLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLT--DAPAE 223

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              PD  LK   EM +I+ + PEAL+ +VEIA +C   + +    LP F   +        
Sbjct: 224  DLPDLDLKPLEEMQNIYREHPEALQASVEIAEQCRVDVSLGQTRLPSFPTPDG----TSA 279

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++ L +  + GL  R        G   + Y +RL +EL+VI RMKFS YFLIV DF++ A
Sbjct: 280  DDYLTDICMEGLRSRF-------GKPDERYLRRLQYELDVIKRMKFSDYFLIVWDFMKHA 332

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I  GPGRGS AGS+ AY L ITD+DP++  LLFERFLNP+R+SMPD DIDF   RR
Sbjct: 333  HEKGIVTGPGRGSAAGSLVAYVLYITDVDPIKHHLLFERFLNPERVSMPDIDIDFPDTRR 392

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI+YVQ KYG   VAQIITFG+L AKAALRDVGR   +   + D+L KLIP+ P   +
Sbjct: 393  DEVIQYVQQKYGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPSRPGMTL 452

Query: 488  S---LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 Q+   D R RE+ L    + ++  I++K+EGL RHASTHAAG+V+ + PL+ +VP
Sbjct: 453  DEARQQSPQLDKRLRESSL----LQQVYSIARKIEGLPRHASTHAAGVVLSEEPLTDVVP 508

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPF 603
            + ++    + +TQ+ M  +E  GL+K DFLGL+ LTL++     +  +  +K+DLS I +
Sbjct: 509  L-QEGHEGIYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEKEENIKIDLSSISY 567

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D +T+ LL+   T GIFQLES+GMR  L+ + P  +EDI+A+ +LYRPGP++NI ++ +
Sbjct: 568  SDDKTFSLLSKGDTTGIFQLESAGMRSVLKRLTPSGLEDIVAVNALYRPGPMENIPLFID 627

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+  +   H  +  +L++T GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ KK KE
Sbjct: 628  RKHGRAPVHYPHEDLRSILEDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKKKE 687

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +D+++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I  Q A++K HY
Sbjct: 688  ILDRERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHY 747

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P+ F+   +T  + N +KI ++  +A+   I+I+PPSVN     F V +  + YSL AIK
Sbjct: 748  PLYFMCGLLTSVIGNEDKISQYLYEAKGSGIRILPPSVNKSSFPFTVENGSVRYSLRAIK 807

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
             VG +  + I +A  +KPF+ L DFC RV SK +NR++LE+L+F+GA+D FG +R  LL 
Sbjct: 808  SVGVSAVKDIYKARKEKPFEDLFDFCFRVPSKSVNRKMLEALIFSGAMDEFGQNRATLLA 867

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN--------- 954
            S+D   ++A+    +           + G F D    E FS++   V  E          
Sbjct: 868  SIDVALEHAELFAADDD---------QMGLFLD----ESFSIKPKYVETEELPLVDLLAF 914

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LG YFS HPL  ++  L   G     ++   ++   + L  ++   +  +T+ G  
Sbjct: 915  EKETLGIYFSNHPLSAFRKQLTAQGAVSILQAQRAVK-RQLSLGVLLSKIKTIRTKTGQN 973

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + ++T S+   E EA  FP
Sbjct: 974  MAFLTLSDETGEMEAVVFP 992


>gi|294782977|ref|ZP_06748303.1| DNA polymerase III, alpha subunit [Fusobacterium sp. 1_1_41FAA]
 gi|294481618|gb|EFG29393.1| DNA polymerase III, alpha subunit [Fusobacterium sp. 1_1_41FAA]
          Length = 1133

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/995 (38%), Positives = 597/995 (60%), Gaps = 55/995 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +FVHL +H+ YSLLEG  S+++ L +       ++A+TD  N+F A+EF +KA   GI+P
Sbjct: 4   NFVHLNLHTEYSLLEGVNSIDSFLTRAKELGMNSLAVTDYANMFCAIEFYEKAKKMGIKP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIG +L +  ++              + ++ LL    EGY+ L++L S +Y   +  + +
Sbjct: 64  IIGLELPLYEKEE-----------QNIFTLTLLAKDYEGYKNLVKLASELYK-KKDNREL 111

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLFG-DRLYVNLQ 187
           RI    L+E  ++GLI L+    G I +A   N  S+  +K +  + ++F  +  Y+ +Q
Sbjct: 112 RISKEILKE-HSKGLIALSSSMKGEIGKAILMNFPSEKLDKIVDEYIEIFSKENFYLEIQ 170

Query: 188 RHRGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                +   E++V+     ++A    + LVATNN  ++  + YE  D+++ +     +  
Sbjct: 171 A----NELLETKVINDKFYEIAKLKNIELVATNNVHYVDRDGYELQDIVICIQSGWKLKD 226

Query: 243 KDRPR-VTPDHYLKNRSEMV-SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
           K+R R V+ + YLK++ EM  S+     +A+ENT  IA  C+  ++      P +     
Sbjct: 227 KNRKRAVSKELYLKSKEEMQRSLDERFHKAIENTNYIASLCNLEIKFGNLQFPYY----- 281

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQ------GAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                    E+ N+  +G++  L          I K    +D  +RL++EL+VI +M +S
Sbjct: 282 ---------EVPNQ-YSGMDEYLKSICYENIKKIYKENLTKDILERLEYELSVIIKMGYS 331

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
           GYF++V DFI +AK+N IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+S
Sbjct: 332 GYFIVVWDFIAYAKRNGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERIS 391

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           MPD DID C++RRDE+I YV +KYG ERVA IITFG ++A+AA+RD+GR L +   ++DR
Sbjct: 392 MPDIDIDICRERRDELIDYVVHKYGRERVAHIITFGRMKARAAIRDIGRVLDIDLKKIDR 451

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           L KL+ +      +L+   + ++       D  + +++++S ++E   RH STHAAGI+I
Sbjct: 452 LSKLVSSFQTLEKTLKENVEVAKL---YTTDIELQKVIDLSIRIENKIRHVSTHAAGILI 508

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
               L + VP+Y D +  +  TQ+ MK +E  GL+K DFLGLK L+ +Q+++D++ + + 
Sbjct: 509 TKEDLDRTVPIYLDEKEGVIATQYQMKELEDLGLLKIDFLGLKNLSNIQRTIDYIKKYKN 568

Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
           + ++L  IP DD + + +L+   + G+FQLES+G+R+ ++ ++P+ +EDI+AL++LYRPG
Sbjct: 569 IDIELYKIPLDDKKVFEMLSQGDSTGVFQLESTGIRKIMKRLKPNKLEDIVALLALYRPG 628

Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           P+ + +V  + NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD
Sbjct: 629 PLQSGMVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMANYSLGEAD 688

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           +LRRAMGKK    M + +E+FI  A +N  ++  A  IFEL+ KFA YGFNKSH+ AYA+
Sbjct: 689 LLRRAMGKKNFAIMRENREKFIQRAVENNYTEEKADEIFELIDKFAGYGFNKSHSVAYAM 748

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
           ISY TA++K +YP  + AA MT E+     I  +  DA++  I+I PP+VNTP   F++ 
Sbjct: 749 ISYWTAYLKAYYPAFYFAAIMTSEISETGDIAYYFNDAKEHKIRIYPPNVNTPSAYFEIK 808

Query: 832 DNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
           ++ I YSLAAIK +G   A+ I+E    +  +  L++F  R     +N+R LE+L+ +GA
Sbjct: 809 NDGISYSLAAIKNLGLNLAKKIVEDYEKNGVYSKLDEFLIRNKKNGINKRALEALILSGA 868

Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
           LD    +R +   S+D +  Y     K    +  N+F     T  +K TL      N   
Sbjct: 869 LDELEGNRKEKFLSIDKVLDYVSKASKTDEIQQMNLFGEASKTI-NKFTLTSCEDFNLDE 927

Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
           +   E+  LGFY S HPLD YK I+    I    E
Sbjct: 928 KLTKEKEFLGFYLSSHPLDKYKDIITTFSINKLSE 962


>gi|310658953|ref|YP_003936674.1| DNA polymerase III dnae [Clostridium sticklandii DSM 519]
 gi|308825731|emb|CBH21769.1| DNA polymerase III DnaE [Clostridium sticklandii]
          Length = 1150

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/995 (38%), Positives = 590/995 (59%), Gaps = 58/995 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL +H+ YSLL+G   ++ ++ +       A+AITD   +F  ++F +KA A GI+PI
Sbjct: 5   FVHLHLHTQYSLLDGFAKIDKLIQRAKDYSMDAVAITDHGVMFGVIDFYKKAKANGIKPI 64

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IGC++          T + K         ++LL    +GY+ L++LVS M  ++      
Sbjct: 65  IGCEVY-----TASRTYKDKEGIDKKSGHLILLAENEKGYRNLVKLVS-MGFVEGFYYKP 118

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
           RI    L+E  +EGLI L+   +G I +       + A++  L  + +FG+   ++ LQ 
Sbjct: 119 RIDYKILKE-HSEGLIGLSACLAGEIQQKLMNGQYKEAKEIALMLRDIFGENNFFLELQD 177

Query: 189 HRGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
           H      RE + V     +L+    +PLVATN+  ++ ++D + HD+L+ +     ++ +
Sbjct: 178 HG----IREQKKVNIFLRKLSQDTGIPLVATNDVHYVDKDDAKTHDILLCIQTGKTLADE 233

Query: 244 DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +     D  Y K++SEM  +F D  +AL NT EIA RC+     +   LP +   E   
Sbjct: 234 HKMEFETDEFYFKSQSEMYELFPDDAQALRNTWEIANRCNVDFDFNTIHLPEYSVPE--- 290

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFLIV 360
                     NKA +    +L Q  +   Y   D +  +RLDFELNVI  M +  YFLIV
Sbjct: 291 ----------NKAPSEYLRQLCQDGLVDRYKTIDSKLQERLDFELNVIENMGYVEYFLIV 340

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            DFI ++K++NI VGPGRGS AGS+ AY L ITDIDP+++ LLFERFLNP+R+SMPD DI
Sbjct: 341 WDFIDFSKRSNIMVGPGRGSAAGSIVAYTLGITDIDPIKYGLLFERFLNPERVSMPDIDI 400

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DFC ++R++VI YV+ KYG + V+QIITFG+L A++++RDVGR + + YS VD++ K IP
Sbjct: 401 DFCYEKREKVIDYVREKYGSDHVSQIITFGTLGARSSIRDVGRVMGISYSDVDKVAKEIP 460

Query: 481 NDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              A  ++++   D +   R+    D     L+++++ +EGL RHASTHAAG+VI   P+
Sbjct: 461 --FALNMTIEKALDLNPNLRKIYNEDEKARELIDVAKNVEGLPRHASTHAAGVVISKEPV 518

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDL 598
              VP+Y   + +   TQF M  +E+ GL+K DFLGL+TLT++QK++D  L  R + +D 
Sbjct: 519 DHYVPLY--TQDNAVTTQFPMTTLEELGLLKMDFLGLRTLTVIQKAIDIILRTRNITIDF 576

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
           S   +DD   Y LL++  TLG+FQLESSGMRQ ++ ++P+  EDI+A +SLYRPGP+D+I
Sbjct: 577 SNSDYDDKAVYELLSSGDTLGVFQLESSGMRQFMKELKPETFEDIVAGISLYRPGPMDSI 636

Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
            +Y   KN  + +V  H  I P+L+ T+G+++YQEQVMQ+ + L+GYS   +D++RRAM 
Sbjct: 637 PLYIKNKNNPDSVVYDHESIRPILEVTRGILVYQEQVMQVVRDLAGYSYGRSDLVRRAMS 696

Query: 719 KKIKEEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
           KK  + M++++  F            I+G  +NGI + IA  IF+ +  FA+Y FNKSHA
Sbjct: 697 KKKMDVMEEERRNFVYGKEDENGNIEINGCVRNGIPEKIANKIFDDMIDFANYAFNKSHA 756

Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
           AAYAV++Y+TA++K +YPVEF+AA MT  M N +K+ ++ ++  +  I+++ P VN    
Sbjct: 757 AAYAVLAYETAYLKAYYPVEFMAAIMTSVMGNTDKVVEYIRECERLKIEVLKPDVNKSFT 816

Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
           +F V +N I YSL A+K VG     +++    +K  +   +DF  R+D K +N+R +ESL
Sbjct: 817 EFAVENNHIRYSLCAVKNVGVHFVENLVAEREEKGIYIDFDDFAKRLDKKDINKRTIESL 876

Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKF 943
           +  GA D    +R  ++   + I        KN      ++F    +    +  I L +F
Sbjct: 877 IKCGAFDELIPNRASIMAGYEKILSSISNSRKNNIEGQVSLFDTQLQNEVKAKIIELSEF 936

Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
              N   + + E+ VLG Y SGHPL+ YK +L ++
Sbjct: 937 ---NDKEKLQMEKEVLGLYLSGHPLNEYKDMLSRI 968


>gi|78184874|ref|YP_377309.1| DNA polymerase III subunit alpha [Synechococcus sp. CC9902]
 gi|78169168|gb|ABB26265.1| DNA polymerase III, alpha subunit [Synechococcus sp. CC9902]
          Length = 1172

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/1058 (37%), Positives = 606/1058 (57%), Gaps = 51/1058 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L +++++      PAIA+TD   ++ A+E  +      ++P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPSMVERAKELGMPAIALTDHGVMYGAIELLKLCKGTDLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IIG ++ +       +      P P       +V+L   A GY+ L++L S  +L     
Sbjct: 62   IIGNEMYV-------INGSIDDPQPKKEKRYHLVVLAKNAIGYRNLVKLTSISHLRGMRG 114

Query: 127  QSV--RICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            + +  R C+   L +  +EGLI+ T    G I +A      +VA      ++ +FG+  Y
Sbjct: 115  RGIFSRACVDKDLLQRHSEGLIIATACLGGEIPQAILRGRPEVARDVARWYQDVFGEDFY 174

Query: 184  VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H    DR   S++V++A   ++ LVATN++ +L+++D EAHD L+ V    ++S 
Sbjct: 175  LEIQDHGSPEDRIVNSEIVKIAEELDIQLVATNDAHYLTKQDVEAHDALLCVLTGKLISD 234

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296
            + R R T   Y+K   EM  +F+D      + +A+ NT ++A +      +    +PRF 
Sbjct: 235  EKRLRYTGTEYIKTEEEMGRLFTDHLDPDVVQKAITNTAKVAEKVEDYDILGKYQMPRFP 294

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              +           LR   + GL  RL   +      A++Y  R+  EL ++ +M F  Y
Sbjct: 295  IPD----GHTAVTYLREVTLQGLRDRLELKS--DDPIAENYADRMSHELEIMEQMGFPTY 348

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL+V D+I++A++ NIPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMP
Sbjct: 349  FLVVWDYIRFAREQNIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMP 408

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL 
Sbjct: 409  DIDTDFCIERRCEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLA 468

Query: 477  KLIPNDPAHPVSLQA-IADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            KLIP     P  L+A I D+S    FRE    DP V R ++++ ++EG  +    HAAG+
Sbjct: 469  KLIPVVRGKPAKLKAMIGDESPNPEFREKYQGDPVVKRWVDMAMRIEGTNKTFGVHAAGV 528

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQ 591
            VI   PL QLVP+ R+    + +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +   
Sbjct: 529  VIAADPLDQLVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVS 587

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             G ++D   +P  D +T+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYR
Sbjct: 588  SGTRIDPDKLPPQDADTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYR 647

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+D  ++  + NRK+G+E I   H +++P+L ET G+++YQEQ+M+IAQ L+GYSL +
Sbjct: 648  PGPLDAGLIPKFINRKHGREAIDFAHEILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQ 707

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK   EM K +  F+ GA K G+   ++  +F+ +  FA+Y FNKSH+ AY
Sbjct: 708  ADLLRRAMGKKKVSEMQKHRGIFVEGAKKRGVDVKVSDELFDQMVLFAEYCFNKSHSTAY 767

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
              ++YQTA++K HYPV ++AA +T+     +K++++  +     I++MPP +N   +DF 
Sbjct: 768  GAVTYQTAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDLNASLIDFT 827

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
               +RI + L+A++ +G    R ++E+   D PF SL D C R+ S  LNRR LESL+  
Sbjct: 828  PNGDRILFGLSAVRNLGDGAIRRLIESRENDGPFRSLADLCDRLPSSVLNRRGLESLIHC 887

Query: 889  GALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITL 940
            GA+D      +R QL+  LD +  +A    K+R +   N+F      A + G     +  
Sbjct: 888  GAMDAMDPNANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAAPAEDDGPTDLSMAP 947

Query: 941  EKFSVEN--SSVRFENEQRVLGFYFSGHPLDVYKP---ILRKMGIKGYEESVATIRGNNI 995
            +   V +   S +   E+ ++GFY S HPL    P   +L  +G+   EE     + + I
Sbjct: 948  KAAPVPDYPPSEKLRLEKDLVGFYLSDHPLKQLTPSSRLLAPIGLGSLEEQPDKAKVSAI 1007

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                M+   +Q  TRKG R+  +   +     EA  FP
Sbjct: 1008 ---TMITELRQVTTRKGDRMAILQLEDLTGSCEAVVFP 1042


>gi|304436411|ref|ZP_07396386.1| DNA-directed DNA polymerase III alpha subunit [Selenomonas sp. oral
            taxon 149 str. 67H29BP]
 gi|304370575|gb|EFM24225.1| DNA-directed DNA polymerase III alpha subunit [Selenomonas sp. oral
            taxon 149 str. 67H29BP]
          Length = 1142

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/1043 (37%), Positives = 612/1043 (58%), Gaps = 44/1043 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S +F HL VH+ YSLL+GA  + +++ +       A+A+TD   ++ A+ F ++A A GI
Sbjct: 12   SMAFAHLHVHTEYSLLDGASRIKDLVRRTKELGMDAVAMTDHGVMYGAVAFYKEAKAQGI 71

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             PIIGC++ +  +   +      T +     ++LL     GY+ L++L+S +  ++    
Sbjct: 72   HPIIGCEVYLAPRQRQERAEVNGTRYY---HLILLAENECGYRNLVQLIS-LANIEGYYY 127

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              RI    L     +GLI L+   +G I +A      ++A++ +  ++ +FG D  ++ +
Sbjct: 128  KPRIDKELLHRF-HDGLIALSACVAGEIPQAILRGDMELADQLVREYRDIFGKDNFFLEV 186

Query: 187  QRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   +    ++ ++ LA  +++ L ATN+  ++  ED E HD+L+ V     ++  DR
Sbjct: 187  QNHGLPEEMTVNRALRDLAKKYDIGLTATNDVHYVHAEDSEFHDILLCVQTGRTLNDPDR 246

Query: 246  PRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R + PD+YLK+  EM  +F+D P A+ENT +IA RC          LP +      D  
Sbjct: 247  MRFSGPDYYLKSEEEMSDLFTDYPGAIENTAKIAARCQVDFTFGELQLPYY---PLPDGY 303

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              ++  LR   +  L  R             + RQRLD+EL VI +M ++ YFLIV DFI
Sbjct: 304  TTDDAYLRALCIERLPARYPTAR-------DEVRQRLDYELGVIHKMGYASYFLIVWDFI 356

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+ + + VGPGRGS AGS+ AY L IT+IDPL+++LLFERFLNP+R+SMPD DIDF  
Sbjct: 357  NYARGHGVAVGPGRGSAAGSIVAYLLGITNIDPLQYALLFERFLNPERVSMPDIDIDFDD 416

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
              R  VI YV+ +YG + VAQI TFG++ AK A+RDV R L+MP+ +V  + KL+P +  
Sbjct: 417  INRGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVARVLEMPFGEVSTITKLVPAELN 476

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+ + + FR+    D    R++++++K+EGL R+ S HAAG+VI   PL++ VP
Sbjct: 477  ITLD-RALEESADFRKRYEEDEKTHRVIDLARKIEGLPRNTSIHAAGVVIAKSPLTRQVP 535

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            ++  V     VT+++   +E  GL+K DFLGL+TLT++  ++  + Q  G+++D+  IP 
Sbjct: 536  VW--VSDGTLVTEYDKDDVEALGLLKMDFLGLRTLTIIDDAVKNIRQSHGIELDVDKIPL 593

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
             D +T  +L    T  +FQ+ES+GM   ++ +QP    D+I  V+LYRPGP+ + +V  +
Sbjct: 594  VDEKTSRMLCAGDTGAVFQMESTGMTNLVKDLQPKGFVDLIPTVALYRPGPLGSGMVTDF 653

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             +  +GK+++V +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK 
Sbjct: 654  IDGLHGKKEVVYLHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKKK 713

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E +  QKE F+ G  KNGI   +A +IF+LL  FADYGFNKSH+AAY ++++QTA++K 
Sbjct: 714  HELLMAQKEIFLQGCEKNGIEAALANHIFDLLTHFADYGFNKSHSAAYGLLAWQTAYLKA 773

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEF+A  +T  MD  +KI  + Q   Q NI+I+PP +N     F +    I + LAA
Sbjct: 774  HYPVEFMAGVLTSIMDKTDKIPVYIQLCHQMNIKILPPDINASTAGFSIESGAIRFGLAA 833

Query: 842  IKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            ++ VG T    + +  SA+  F SL DFC+R+D + LN+R +ESL+  GA D  G  R Q
Sbjct: 834  VRNVGETAIESMEQVRSANGSFRSLIDFCARIDVRILNKRAIESLIKCGAFDSLGTERNQ 893

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV---------R 951
            LL SLD+  + A   +++R +    +F  +        T+E      ++V         R
Sbjct: 894  LLSSLDSAMQDAARTQRDRISGQMGLFGQD--------TMESIHQVQNAVEVPPSTPRER 945

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRK-MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
               E+   GFY +GHPLD Y+  L   + I      +   R   +R+  ++ + ++  T+
Sbjct: 946  LMWEKEATGFYITGHPLDDYRDTLSCLLPISDILTGLCKDR-QLVRIGGILTNTKRYTTK 1004

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
            KG  + +    + +   E   FP
Sbjct: 1005 KGDTMLFAEMEDYSGHIELTVFP 1027


>gi|294501515|ref|YP_003565215.1| DNA polymerase III subunit alpha [Bacillus megaterium QM B1551]
 gi|294351452|gb|ADE71781.1| DNA polymerase III, alpha subunit [Bacillus megaterium QM B1551]
          Length = 1118

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/1032 (37%), Positives = 606/1032 (58%), Gaps = 49/1032 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ+ SSYSLL  ++ ++ +++        AIA+TD N ++  + F +    AGI+PI
Sbjct: 3    FVHLQLQSSYSLLSSSVRIHELVETAKKMNYEAIALTDENVMYGVIPFYKACVKAGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L I   +      + +  +P    +VLL    +GY+ L++L S    L Q K+   
Sbjct: 63   IGLTLSILEHE------ESERAYP----LVLLAENDKGYENLLKLSS----LVQTKEKHG 108

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   WL    + GLI +T G +G I+     N  Q A++ L  FKK++   LY+++QRH 
Sbjct: 109  VNKKWLHHY-SGGLIAITPGVTGEIETLLAENKLQDAKQVLQFFKKVYSQSLYISIQRHG 167

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-- 248
              + +   Q+ +LA    +PLVATN   +L +ED +A++ L A+     +   +   V  
Sbjct: 168  QDEAFINQQLTELAAEENIPLVATNQVKYLKKEDRDAYECLAAIRDGEKLHSDEDEEVKS 227

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + ++Y K+  EM  +F D    +E +++IARRC   + +    +P++            
Sbjct: 228  KSSEYYFKSPDEMEDLFHDQHFLIEESIKIARRCELEISLGVMSIPKYPVPPS----VTS 283

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     GL+ R            + Y +RLD+ELN+I  M+FS YFLIV DF+ +A
Sbjct: 284  SAYLRTLCEKGLQERFQ-------VITEQYEERLDYELNIIENMRFSDYFLIVWDFMNYA 336

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             ++ I  GPGRGS AGS+ +YAL IT++DP++  LLFERFLNP+R+SMPD DIDF  ++R
Sbjct: 337  HEHGILTGPGRGSAAGSLVSYALRITNVDPIQHQLLFERFLNPERISMPDIDIDFPDNKR 396

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D+VI+YV  KYG   VAQIITFG+L AKAA+RDVGR +      ++++ K IP  P    
Sbjct: 397  DQVIQYVTQKYGALHVAQIITFGTLAAKAAVRDVGRVMGFDQEALNKMSKAIPTKPG--T 454

Query: 488  SLQAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L++   DSR  +  L++    +    I+ K+EGL RH STHAAG+VI ++PL+Q V + 
Sbjct: 455  TLKSALRDSRVLQDYLSENEARKQWYNIAMKIEGLPRHTSTHAAGVVISEKPLTQSVAV- 513

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            ++   D+ +TQ+ M+ ++  GL+K DFLGL+ LT+L   L  + +    K+ LS IPF+D
Sbjct: 514  QEGHDDVYLTQYPMEALQDVGLLKMDFLGLRNLTILDHILKKIERDMNRKLSLSHIPFND 573

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T+ LL+   T GIFQLES GMR+ L+ ++P  +EDI+A+ +LYRPGP++NI  Y  RK
Sbjct: 574  QKTFELLSKGDTTGIFQLESDGMRRVLQQLKPTELEDIVAVNALYRPGPMENIPTYIKRK 633

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G EK++  HP +  +L+ T GVI+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +  +
Sbjct: 634  HGVEKVIYDHPTLKDILQSTHGVIVYQEQIMQIASKMAGFSLGEADLLRRAVSKKERAVL 693

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  FI G+ K G   ++A  +++L+ +FADYGFN+SHA AY++++YQ A++K HYP+
Sbjct: 694  DRERAHFIQGSKKKGYDLSVANRVYDLIVRFADYGFNRSHAVAYSMVAYQLAYLKAHYPL 753

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            +F +A +T  + N  KI ++  + ++  IQ++PPS+N     F V    I YSLAAIK +
Sbjct: 754  QFFSALLTSVIGNEGKIAQYINELKRKKIQVLPPSINKSMYSFNVEGESIRYSLAAIKHI 813

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G    + I E    K F+ L DFC+RV  K +N++ LE+L+ +G  D FG +R  LL ++
Sbjct: 814  GAAAMQEITEERKKKRFEDLFDFCARVSQKAVNKKALEALILSGGFDEFGENRATLLATI 873

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN----EQRVLGF 961
            D   ++A  V              +   F  + +L+   +E   ++ E+    E+ +LGF
Sbjct: 874  DVAFEHASLV-----------LPDDDFGFGAEFSLKPKYMEKEELKIEDRLQYEKDMLGF 922

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S HP   Y+ +     +    +      G  + L   V+  +  +T+KG ++ ++  +
Sbjct: 923  YLSSHPASQYEALNSFYSVVSLHDMKEYASGKAVSLLVFVLEIRVIRTKKGEQMAFLRIT 982

Query: 1022 EPAKEYEANFFP 1033
            + + E E   FP
Sbjct: 983  DESGEGEVVAFP 994


>gi|209522938|ref|ZP_03271495.1| DNA polymerase III, alpha subunit [Arthrospira maxima CS-328]
 gi|209496525|gb|EDZ96823.1| DNA polymerase III, alpha subunit [Arthrospira maxima CS-328]
          Length = 1219

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/1087 (36%), Positives = 628/1087 (57%), Gaps = 80/1087 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  L  ++ +      PAIA+TD   ++ A+E  +   + GI+P
Sbjct: 2    SFVGLHIHSDYSLLDGASQLPQLVSRAVELGMPAIALTDHGVMYGAIELIKICRSKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQS 128
            IIG ++ + +  ++ +  +G   +  V    +L    +GY+ L++L +  +L   QGK  
Sbjct: 62   IIGNEMYV-LNADVTVQQRGIKKYHQV----VLAKNTQGYKNLVKLTTISHLKGFQGKGI 116

Query: 129  -VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              R C++  L E   EGLI+ +    G + +A       +A + +  +K++FGD  Y+ +
Sbjct: 117  FARPCINKELLEEYHEGLIVTSACLGGEVPQAILQRRMDIARQTVEWYKRVFGDDYYLEI 176

Query: 187  QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    DR     +VQLA   E+ +VATN+S F+S  D EAHD L+ +    ++++ +R
Sbjct: 177  QDHGSPEDRIVNVALVQLAREFEVKIVATNDSHFISCNDVEAHDALLCINTQKLITEDNR 236

Query: 246  PRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCS-FILQVHAPILPRFIEK 298
             R +   YLK+  EM+ +F D LP     EA+ NT+E+A +   +   +  P +P +   
Sbjct: 237  LRYSGTEYLKSAEEMMQLFRDHLPDEVIKEAIANTLEVAEKVEPYTGILGEPRIPDYPIP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRL-AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                     +  L   A  GL+ RL AQG   +      YR+RL++EL ++ +M F+ YF
Sbjct: 297  P----NHTADTYLEEIAWEGLKKRLNAQG---RSEIKPVYRERLEYELKMMQKMGFATYF 349

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+V D+I+ A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD
Sbjct: 350  LVVWDYIKHARDNHIPVGPGRGSAAGSLVAYALQITNIDPVHHGLLFERFLNPERKSMPD 409

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D DFC DRRDE+I+YV +KYG E+VAQIITF  + +KA L+DV R L +PYS+ D++ K
Sbjct: 410  IDTDFCIDRRDEMIKYVTSKYGEEKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAK 469

Query: 478  LIPNDPAHPVSLQAIADDS----RFREA--------------RLADPSVDRLLEISQKLE 519
            +IP     P  L+ +  D      F++A               +   +V + ++++ ++E
Sbjct: 470  MIPVSRGKPTKLKVMISDQSPSPEFKQAYDNDFVPIKNDAGEEVGTIAVRQWVDMAIRIE 529

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G  +    HAAG+VI  +PL ++VP+ R+    + +TQ+ M+ IE  GL+K DFLGLK L
Sbjct: 530  GTNKTFGVHAAGVVISKQPLDEIVPLQRNNDGSV-ITQYFMEDIEALGLLKMDFLGLKNL 588

Query: 580  TLLQKSLDFLAQRG--------------------VKVDLSLIPFDDHETYHLLTTKGTLG 619
            T++Q++L++++Q                       K  +  +P D  +TY +L      G
Sbjct: 589  TIIQRTLNYISQNHHLDIDPYNLAADERKAMDILAKGAVKKMPEDVAKTYKILERGDLEG 648

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPL 677
            +FQLESSGMRQ ++ ++P  IEDI ++++LYRPGP+D  ++  + NRK+ +E I   H L
Sbjct: 649  LFQLESSGMRQIVKDLKPSSIEDISSILALYRPGPLDAGLIPQFINRKHKREPIRYEHKL 708

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++P+L ET G+++YQEQ+M++AQ L+GYSL +AD+LRRAMGKK   EM K +E FI GA+
Sbjct: 709  LEPILNETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKASEMQKHRETFIDGAT 768

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            +NG+ + IA ++F+ + KFA+Y FNKSH+ AY  I+YQTA++K +YP E++AA +T    
Sbjct: 769  RNGVPQNIAEHLFDQMVKFAEYCFNKSHSTAYGYITYQTAYLKANYPTEYMAALLTENSG 828

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
            N +K++ + +  +   I ++PP +N   VDF   +NRI + L+AIK VG     H++   
Sbjct: 829  NTDKVRAYIESCKHLGIDVVPPDINRSNVDFTPIENRIVFGLSAIKNVGDGAIEHLLSVR 888

Query: 858  AD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
             +  PF SL D C R++ + +N R LESL+ +GA D    +R Q ++ L+ +  +AQ   
Sbjct: 889  EEGGPFRSLADLCDRINLQMVNSRALESLIKSGAFDSLHANRKQSIEYLNIVIPWAQDRA 948

Query: 917  KNRTNKHENIF------AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            KNR     N+F        E  + S +    K        + + E+ +LGFY S HPL  
Sbjct: 949  KNREIGQTNLFDLVNYATTESNSPSGEPAFPKGDDYAPKDKLQFEKELLGFYVSDHPLKS 1008

Query: 971  YKPILRKMGIKGYEESVATIRGNN----IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
                L   GI     ++  +        +++A ++++ +   T+KG R+ ++   +   +
Sbjct: 1009 ----LLDSGILPDNVTLDKLPEQKSKAAVKVAVILINIKPHLTKKGDRMAFLLLEDLTGQ 1064

Query: 1027 YEANFFP 1033
             +A  FP
Sbjct: 1065 IDAVVFP 1071


>gi|18309342|ref|NP_561276.1| DNA polymerase III DnaE [Clostridium perfringens str. 13]
 gi|18144018|dbj|BAB80066.1| DNA polymerase III, subunit alpha [Clostridium perfringens str. 13]
          Length = 1192

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1010 (37%), Positives = 593/1010 (58%), Gaps = 64/1010 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6   FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71  IGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           +GC++ +  +   +K  ++    +     +VLLV   +GY+ L+++VS +  ++      
Sbjct: 66  LGCEVYVVPKSRKIKSNDEDNKTY----HLVLLVKNEKGYENLMKIVS-VASIEGFYYKP 120

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           RI   +L+E  +EG+I L+    G + +A    +   A +  + ++  F D  Y+ LQ H
Sbjct: 121 RIDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAAIFYRDTFKDGFYLELQNH 179

Query: 190 RGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R 
Sbjct: 180 GIEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRY 239

Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-----------I 296
             D  YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F           +
Sbjct: 240 PSDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEGVEPFEYL 299

Query: 297 EKECDD--IQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            K C D  I + EE   L+ K +  ++     G        ++  +RL++EL VI +M +
Sbjct: 300 RKTCFDGLIDRLEELKPLKEKGIYDIDKVYEIGE--NNDKVKEDIERLEYELGVIKQMGY 357

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFERFLNP+R+
Sbjct: 358 VDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERFLNPERV 417

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
           SMPD D DFC + R  VI YV  KYGH+ V+QIITFG++ A+A +RDVGRA+   Y++VD
Sbjct: 418 SMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMNYTYAEVD 477

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
           R+ K IP      +  +A+  +   +     +  V  L+++S++LEGL RH+STHAAG+V
Sbjct: 478 RIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVRELIDVSRRLEGLPRHSSTHAAGVV 536

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QR 592
           I  +PL + VP+ ++  S   VTQF+M  +E+ GL+K DFLGL+TLT+++ ++D +   R
Sbjct: 537 IASQPLVEYVPLQKNDES--IVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAVDMIKYNR 594

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
           GV +DL  + FDD E Y ++    T+G+FQLES+GM   ++ ++PDC+EDIIA +SLYRP
Sbjct: 595 GVDIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIAGISLYRP 654

Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           GP+  I  Y + K   + +  I P ++ +L  T GV++YQEQVM+I + L+GYS+  +D+
Sbjct: 655 GPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGYSMGRSDL 714

Query: 713 LRRAMGKKIKEEMDKQKERFISGAS------------KNGISKTIAVNIFELLAKFADYG 760
           +RRAM KK  + M+++++ FI G              +NGIS   A  IF+ +  FA Y 
Sbjct: 715 VRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSMMDFASYA 774

Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
           FNKSHAAAYAVI +QTA++  +YPVEFLAA +   M N +K+ ++ + A +  IQ++PP 
Sbjct: 775 FNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLGIQVLPPD 834

Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNR 879
           +N     F V  + I + + AIK VG     +I ++  +K  F SL DFC+++D   +N+
Sbjct: 835 INESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGKFTSLMDFCNKIDLSIVNK 894

Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
           R +ESL+ AG  D     R QLL   + I        K   +   ++F            
Sbjct: 895 RSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFG----------A 944

Query: 940 LEKFSVENSSVRFEN------------EQRVLGFYFSGHPLDVYKPILRK 977
           L++ S  N  +R+ N            E+ + G Y SGHPLD Y+  L++
Sbjct: 945 LQEESESNLEIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKE 994


>gi|126641511|ref|YP_001084495.1| DNA polymerase III alpha chain [Acinetobacter baumannii ATCC 17978]
          Length = 1155

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/987 (38%), Positives = 577/987 (58%), Gaps = 58/987 (5%)

Query: 42   PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
            PA+A+TD +NL +A++F       GI+PI+G  + ++   +                  L
Sbjct: 2    PALALTDLSNLHAAVKFYNSCLKKGIKPILGSTIRLNDAQH---------------RATL 46

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICL--SWLQEIGTEGLIMLTGGSSGPIDRAF 159
            L  +  G++ L E+VSR ++  +G+Q    C+   W+ E   + +++L  G    + +  
Sbjct: 47   LAMSDIGWKGLTEIVSRGFI--EGQQLSIPCVQKEWVLEQHQDIIVLL--GQHSDVGQML 102

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQ----LAYTHELPLVATN 215
              ++ Q AE  L  + + FG+R+Y+ L R    DR  E   +Q    LA  + + +VA N
Sbjct: 103  CSSNPQKAEPLLEEWIEKFGNRVYLALTRT---DRPGEEDFIQEAAKLAAKYNIGVVAHN 159

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENT 274
            +  F+ +ED+EAH+  + +A   V++   RPR+ +P+ Y K   EM+ +FSD+P A+ENT
Sbjct: 160  DVHFIEKEDFEAHEARVCIADGYVLADDRRPRLYSPEQYFKTSDEMIELFSDIPSAIENT 219

Query: 275  VEIARRCSFILQVHAPILPRF-------IEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
             +IA+RC+  L++    LP +       I+   + + KE   E R   +  +E R     
Sbjct: 220  YQIAKRCNVTLKLGTYFLPEYPIPDGFTIDTYFEHLSKEGLEE-RLNYLYPVEKRGEDWP 278

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
              +    + Y +R+D+E+ +I +M F GYFLIV DFIQWAK N +PVGPGRGSGAGS+ A
Sbjct: 279  EIR----KPYDERIDYEVGIILKMGFPGYFLIVMDFIQWAKNNGVPVGPGRGSGAGSLVA 334

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            Y+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DFC   RD VI YV   YG E V+QI 
Sbjct: 335  YSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYVSRTYGREAVSQIA 394

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            TFG++ AK A+RDV R L   Y   DR+ K++P  P       AI  + + ++  + +PS
Sbjct: 395  TFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLGVDLATAIEMEPQLKDI-VTNPS 453

Query: 508  ------VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
                     + E++ KLEG+ R+   HA G+VI    ++    +  D      V Q++  
Sbjct: 454  NPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPGKITDFSAVLCDADGTNRVAQYDKD 513

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDLSLIPFDDHETYHLLTTKGTL 618
             +E AGL+KFDFLGL+ LT+++ ++  + +       +++S +P DD + Y +     T 
Sbjct: 514  DVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSNDPLNISHVPLDDPKAYSVFADANTT 573

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
             +FQ ES GM++ L+  +P   E+IIA VSLYRPGP+D I  + +R +G E    +HPL+
Sbjct: 574  AVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHRMHGGE-FEYLHPLL 632

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            + +L+ T G+++YQEQVMQ AQ+ +GY+L  AD+LRRAMGKK  EEM KQ++ F+ GA +
Sbjct: 633  EGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLRRAMGKKKPEEMVKQRQIFLEGAGQ 692

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y TAW+K HYP EF+AA M+ EM N
Sbjct: 693  KGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPAEFMAAVMSSEMQN 752

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEAS 857
             + +     D R   ++++PPSVN     F   D++ I Y L AIKGVG    + ++++ 
Sbjct: 753  TDSVVFLIDDCRNNGLEVLPPSVNMSTYHFHASDDKTIVYGLGAIKGVGEQAMQSVIDSR 812

Query: 858  ADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
              + P+  L DFC R+D KK+N+R LE+L+ AGALDC G  R  L+  L    + A+   
Sbjct: 813  RQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIERSSLMAQLPEAVQAAEQAR 872

Query: 917  KNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
             NR +   ++F   E+        ++ +S E   VR + E+  LG Y +GHP+DVY+  L
Sbjct: 873  SNRESGIMDLFGEVEEVQRKPAKPVKPWSDE---VRLKGEKDTLGLYLTGHPIDVYRQEL 929

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVV 1002
            +        E  AT RG     A +V+
Sbjct: 930  KAFIPAKLNEITATRRGVTTVYAGLVL 956


>gi|256028238|ref|ZP_05442072.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289766170|ref|ZP_06525548.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289717725|gb|EFD81737.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
          Length = 1133

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/1023 (38%), Positives = 603/1023 (58%), Gaps = 61/1023 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSL EG  S++N L K       ++A+TD  N+F A+EF QKA   GI+P
Sbjct: 4    NFVHLNLHTEYSLSEGVNSIDNFLIKAKELGMTSLAVTDYANMFCAVEFYQKAKKMGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +  +D              + S+ LL     GY+ L++L S +Y  ++ ++ +
Sbjct: 64   IIGLELPVFNKDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRE-L 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-FKKLFG-DRLYVNLQ 187
            ++    L+E  ++ LI  +   +G I +A   NSS      ++  + ++F  +  Y+ +Q
Sbjct: 112  KLNKEILKEY-SQDLIAFSSSMNGEIGKAILTNSSDEKIDSIINEYIEIFSKENFYLEIQ 170

Query: 188  RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   + +    +   LA  + L LVATNN  ++  + YE  D+++ +     V +K+R 
Sbjct: 171  ANELLETKIINDKFYDLAKFYNLELVATNNVYYVDRDGYELQDIIICIQSGLKVKEKNRK 230

Query: 247  R-VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R ++ + YLK++ EM     +   +A+EN   IA  C+  +       P +      ++ 
Sbjct: 231  RTISKELYLKSKDEMKRFLGEKFEKAIENANYIADLCNIEITFGNLQFPYY------EVP 284

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFL 358
             E          +G++  L       I K Y     +D   RL++EL+VI +M +SGYF+
Sbjct: 285  SE---------YSGMDEYLKTICHTNIKKLYKEDLTKDILDRLEYELSVIIKMGYSGYFI 335

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V DFI +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD 
Sbjct: 336  VVWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDI 395

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+L KL
Sbjct: 396  DIDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKL 455

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            I   P   +  + + ++    +    D  + ++++++ ++E   RH STHAAGI+I    
Sbjct: 456  IS--PFQTLE-KTLKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGILITKED 512

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L + VP+Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VD
Sbjct: 513  LDRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVD 572

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  IP DD + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPGP+ +
Sbjct: 573  LYKIPLDDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQS 632

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  + NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRR
Sbjct: 633  GMVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRR 692

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK    M + +E+FI  A KNG +   +  IFEL+ KFA YGFNKSH+ AYA+ISY 
Sbjct: 693  AMGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYW 752

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA+ K HYP  + AA MT E+     I  +  DA++  +++  P++N+P   F+V +  I
Sbjct: 753  TAYFKVHYPAYYYAAVMTSEISETGDIAYYFNDAKEHGVRVYSPNINSPSAYFEVKNEGI 812

Query: 836  YYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             YSLAAIK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GALD  
Sbjct: 813  TYSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEI 872

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFSVENSSVR 951
              +R +   S+D +  Y+    K    +  N+F     T  DK  L   E F+++    +
Sbjct: 873  KGNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKTI-DKFNLAISEDFTLDE---K 928

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-------SVATIRGNNIRLAAMVVSK 1004
               E+  LGFY S HPLD YK +L    IK   E       SV T  G    L  ++  K
Sbjct: 929  LNKEKEFLGFYLSSHPLDRYKDVLTTFSIKKLSEFDLEGNQSVKTF-GTITNLKKIITKK 987

Query: 1005 QQK 1007
            +++
Sbjct: 988  EEQ 990


>gi|34763539|ref|ZP_00144477.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27886788|gb|EAA23923.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 1093

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/989 (38%), Positives = 594/989 (60%), Gaps = 63/989 (6%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +FVHL +H+ YSL EG  S+++ L K       ++A+TD  N+F A+EF QKA   GI+P
Sbjct: 3   NFVHLNLHTEYSLSEGVNSIDSFLVKAKELGMSSLAVTDYANMFCAVEFYQKAKKMGIKP 62

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIG +L I  +D              + S+ LL     GY+ L++L S +Y  ++ ++ +
Sbjct: 63  IIGLELPISNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRE-L 110

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-FKKLFG-DRLYVNLQ 187
           +I    L+E  ++ LI L+   +G I +A   NSS      ++  + ++F  +  Y+ +Q
Sbjct: 111 KINKEVLKEY-SQDLIALSSSINGEIGKAILTNSSDEKIDSIINEYIEIFSKENFYLEIQ 169

Query: 188 RHRGYDRYRESQVVQ-----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                    E++++      LA  H+L LVATNN  ++  + YE  D+++ +     V +
Sbjct: 170 A----SELSETKIINDRFYDLAKFHDLELVATNNVYYVDRDGYELQDIIICIQSGLKVKE 225

Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
           K+R R ++ + YLK++ EM     +   +A+EN   IA  C+  +       P +     
Sbjct: 226 KNRKRAISKELYLKSKDEMKRFLGEKFEKAIENANHIADLCNVEISFGNLQFPYY----- 280

Query: 301 DDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYH---AQDYRQRLDFELNVIARMKFS 354
            ++  E          +G++  L       I K Y     +D   RL++EL+VI +M +S
Sbjct: 281 -EVPSE---------YSGMDEYLKTICHTNIKKLYKEDLTKDILDRLEYELSVIIKMGYS 330

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
           GYF++V DFI +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+S
Sbjct: 331 GYFIVVWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERIS 390

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           MPD DID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+
Sbjct: 391 MPDIDIDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDK 450

Query: 475 LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
           L KL+    +H  +L+  + ++    +    D  + ++++++ ++E   RH STHAAGI+
Sbjct: 451 LAKLV----SHSQTLEKTLKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGIL 506

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
           I    L + VP+Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + +
Sbjct: 507 ITKEDLDRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYK 566

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            + VDL  IP DD + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRP
Sbjct: 567 NIDVDLYKIPLDDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRP 626

Query: 653 GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           GP+ + +V  + NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EA
Sbjct: 627 GPLQSGMVDDFINRKNGKEKIEYPHKDLEIILKETYGVILYQEQVMKIASYMADYSLGEA 686

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
           D+LRRAMGKK    M + +E+FI  A KNG +   +  IFEL+ KFA YGFNKSH+ AYA
Sbjct: 687 DLLRRAMGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYA 746

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
           +ISY TA+ K HYP  + AA MT E+     I  +  DA++  I++  P++N+P   F+V
Sbjct: 747 MISYWTAYFKVHYPAFYYAAVMTSEISETGDIAYYFNDAKEHGIRVYSPNINSPSSYFEV 806

Query: 831 GDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +  I YSLAAIK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +G
Sbjct: 807 KNEGITYSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSG 866

Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFSVE 946
           ALD    +R +   S+D +  Y+    K    +  N+F     T  D+  L   E FS++
Sbjct: 867 ALDEIKGNRKEKFLSIDKVLDYSSKASKTDEIQQMNLFGEATKTI-DRFNLAISEDFSLD 925

Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
               +   E+  LGFY S HPLD +K I+
Sbjct: 926 E---KLNKEKEFLGFYLSSHPLDRHKDII 951


>gi|167037102|ref|YP_001664680.1| DNA polymerase III DnaE [Thermoanaerobacter pseudethanolicus ATCC
            33223]
 gi|320115517|ref|YP_004185676.1| DNA polymerase III subunit alpha [Thermoanaerobacter brockii subsp.
            finnii Ako-1]
 gi|166855936|gb|ABY94344.1| DNA polymerase III, alpha subunit [Thermoanaerobacter
            pseudethanolicus ATCC 33223]
 gi|319928608|gb|ADV79293.1| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii subsp.
            finnii Ako-1]
          Length = 1145

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/1056 (37%), Positives = 619/1056 (58%), Gaps = 59/1056 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G+  + +++ K       AIAITD   ++  ++F ++A A GI+PI
Sbjct: 2    FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAQGIKPI 61

Query: 71   IGCQLDI---DMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IGC++ +    MQD    + N+          +VLL     GY+ L+++V+ +  ++   
Sbjct: 62   IGCEIYVAPRSMQDREYGIDNENY-------HLVLLAKDMTGYKNLMKIVT-VASIEGFY 113

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
               R+   +L+E  +EGLI L+   +G +         + A++  L +  +FG    Y+ 
Sbjct: 114  YKPRVDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLE 172

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H   ++ +   ++++L+    +PLVATN+  +L ++D +AH+VL+ +     +  +D
Sbjct: 173  LQDHGILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDED 232

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R     D  YLK+  EM ++FS   EA+ENT +IA  C+   + +   LP++   E  D 
Sbjct: 233  RMSFPTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDS 292

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +     LRN    GL  R            ++  +RLD+EL+VI +M +  YFLIV DF
Sbjct: 293  CEY----LRNLCYEGLYKRYKN-------PGKEVIERLDYELSVIKQMGYVDYFLIVWDF 341

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++AK N I  GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC
Sbjct: 342  IKFAKDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFC 401

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL  PY++VD + K+IP + 
Sbjct: 402  YERRQEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDTIAKMIPFEL 461

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A++ +   +     +  V +L++IS+ LEGL RHASTHAAG+VI   PL   V
Sbjct: 462  GMTID-KALSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYV 520

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+ ++   D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + + +GV +D   + 
Sbjct: 521  PLQKN--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVIIDFDSMG 578

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +DD + Y L++   T G+FQLES GM+Q +  ++P  +EDIIA +SLYRPGP+D I  Y 
Sbjct: 579  YDDLKVYELISKGETEGVFQLESPGMKQFMTELKPKNLEDIIAGISLYRPGPMDQIPRYL 638

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              +N  E IV  HPL+ P+L  T G ++YQEQVMQI + ++GYSL  +D++RRAM KK  
Sbjct: 639  ANRNHPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKM 698

Query: 723  EEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + M+++++ FI             GA +NG+ +  A  +F+ +  FA+Y FNKSHAAAYA
Sbjct: 699  DVMEQERKNFIYGIVDEEGNVIVPGALRNGLDEVTANKLFDEMLDFANYAFNKSHAAAYA 758

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VI+YQTA++K +YPVEF+AA +   +DN++KI  + Q  ++  I+++PP +N     F V
Sbjct: 759  VIAYQTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVQVCKKMGIKVLPPDINESDSYFTV 818

Query: 831  GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +++I + L+A+K VG      I+ E   +  F S+ DF  R+   +LN++ +ESL+ AG
Sbjct: 819  VEDKIRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAG 878

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVE 946
            A   FG  R QLL   D + +  +    N  N   ++F       G   +   LE+F  +
Sbjct: 879  AFSSFGVRRSQLLSVYDKLMENIKKNRNNNLNGQISLFGEVEQSHGVEFEFPDLEEFP-K 937

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIR---GNNIRL 997
            N  +  E E   LG Y SGHPL+ Y   + K      +  K  EE +   +      + +
Sbjct: 938  NRLLSMEKE--TLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQEVVI 995

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            A ++ +K+ K T+  + + +VT  +     E   FP
Sbjct: 996  AGVIATKKIKFTKNNNMMAFVTIEDLYGTVEVIVFP 1031


>gi|168204460|ref|ZP_02630465.1| DNA polymerase III, alpha subunit [Clostridium perfringens E str.
           JGS1987]
 gi|170664100|gb|EDT16783.1| DNA polymerase III, alpha subunit [Clostridium perfringens E str.
           JGS1987]
          Length = 1192

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1010 (37%), Positives = 592/1010 (58%), Gaps = 64/1010 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6   FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71  IGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           +GC++ +  +   +K  ++    +     +VLLV   +GY+ L+++VS +  ++      
Sbjct: 66  LGCEVYVVPKSRKIKSNDEDNKTY----HLVLLVKNEKGYENLMKIVS-VASIEGFYYKP 120

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           RI   +L+E  +EG+I L+    G + +A    +   A +    ++  F D  Y+ LQ H
Sbjct: 121 RIDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAATFYRDTFKDGFYLELQNH 179

Query: 190 RGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R 
Sbjct: 180 GIEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRY 239

Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-----------I 296
             D  YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F           +
Sbjct: 240 PSDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEGVEPFEYL 299

Query: 297 EKECDD--IQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            K C D  I + EE   L+ K +  ++     G        ++  +RL++EL VI +M +
Sbjct: 300 RKTCFDGLIDRLEELKPLKEKGIYDIDKVYEIGE--NNEKVKEDIERLEYELGVIKQMGY 357

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFERFLNP+R+
Sbjct: 358 VDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERFLNPERV 417

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
           SMPD D DFC + R  VI YV  KYGH+ V+QIITFG++ A+A +RDVGRA+   Y++VD
Sbjct: 418 SMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMNYTYAEVD 477

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
           R+ K IP      +  +A+  +   +     +  V  L+++S++LEGL RH+STHAAG+V
Sbjct: 478 RIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVKELIDVSRRLEGLPRHSSTHAAGVV 536

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QR 592
           I  +PL + VP+ ++  S   VTQF+M  +E+ GL+K DFLGL+TLT+++ ++D +   R
Sbjct: 537 IASQPLVEYVPLQKNDES--IVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAVDMIKYNR 594

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
           GV +DL  + FDD E Y ++    T+G+FQLES+GM   ++ ++PDC+EDIIA +SLYRP
Sbjct: 595 GVDIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIAGISLYRP 654

Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           GP+  I  Y + K   + +  I P ++ +L  T GV++YQEQVM+I + L+GYS+  +D+
Sbjct: 655 GPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGYSMGRSDL 714

Query: 713 LRRAMGKKIKEEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYG 760
           +RRAM KK  + M+++++ FI             G  +NGIS   A  IF+ +  FA Y 
Sbjct: 715 VRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSMMDFASYA 774

Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
           FNKSHAAAYAVI +QTA++  +YPVEFLAA +   M N +K+ ++ + A +  IQ++PP 
Sbjct: 775 FNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLGIQVLPPD 834

Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNR 879
           +N     F V  + I + + AIK VG     +I ++  +K  F SL DFC+++D   +N+
Sbjct: 835 INESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGRFTSLMDFCNKIDLSIVNK 894

Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
           R +ESL+ AG  D     R QLL   + I        K   +   ++F            
Sbjct: 895 RSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFG----------A 944

Query: 940 LEKFSVENSSVRFEN------------EQRVLGFYFSGHPLDVYKPILRK 977
           L++ S  N  +R+ N            E+ + G Y SGHPLD Y+  L++
Sbjct: 945 LQEESESNLEIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKE 994


>gi|87124235|ref|ZP_01080084.1| DNA polymerase III, alpha subunit [Synechococcus sp. RS9917]
 gi|86167807|gb|EAQ69065.1| DNA polymerase III, alpha subunit [Synechococcus sp. RS9917]
          Length = 1173

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/1057 (37%), Positives = 606/1057 (57%), Gaps = 47/1057 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++      PA+A+TD   ++ A+E  +   AAGI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPQMVERCKELGMPALALTDHGVMYGAIELLKLCKAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ + +  +++   Q K        +V+L   A GY+ L++L S  +L     + +
Sbjct: 62   IIGNEMYV-INGSIEDPQQKKE---RRYHLVVLAKNATGYRNLVKLTSLSHLRGMRGKGI 117

Query: 130  --RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              R C+   L +  +EGLI+ T    G I +A       VA      ++++FGD  Y+ +
Sbjct: 118  FSRACIDKHLLKQYSEGLIIATACLGGEIPQAILRGRPDVARDVARWYQEVFGDDFYLEI 177

Query: 187  QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    DR    ++V++A    + L+ATN++ +L+  D EAHD L+ V    ++S + R
Sbjct: 178  QDHGSPEDRIVNVEIVRIAKELGIGLIATNDAHYLTRHDVEAHDALLCVLTGKLISDEKR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             R T   Y+++  EM  +F+D      + EA+  T  +A +      +    +PRF   E
Sbjct: 238  LRYTGTEYIRSEEEMGRLFADHLAPEVVQEAITTTALVADKVEDYDILGRYQMPRFPIPE 297

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                     + LR  +  GL  RL  GA         Y +RL +EL ++ +M F  YFL+
Sbjct: 298  ----GHTPVSYLREVSECGLRERLELGA--DEVIDPTYGERLTYELGIMEQMGFPTYFLV 351

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D+I++A+   IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D
Sbjct: 352  VWDYIRFARDQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDID 411

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
             DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KLI
Sbjct: 412  TDFCIERRGEVIDYVTRRYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLI 471

Query: 480  PNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            P     P  L+A+    + +  FR+    DP V R ++++ ++EG  +    HAAG+VI 
Sbjct: 472  PVVRGKPAKLKAMIGEESPNPEFRDKYDKDPVVKRWVDMAMRIEGTNKTFGVHAAGVVIA 531

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGV 594
              PL +LVP+ R+    + +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +    G 
Sbjct: 532  ADPLDELVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVETSLGE 590

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            ++D   +P  D +T+ LL      GIFQLES+GMRQ +  ++P  +EDI ++++LYRPGP
Sbjct: 591  RIDPDKLPAKDPDTFALLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYRPGP 650

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +D  ++  + NRK+G+E I   H  + P+L+ET G+++YQEQ+M+IAQ L+GYSL EAD+
Sbjct: 651  LDAGLIPKFINRKHGREAIDFAHQSLQPILQETYGIMVYQEQIMKIAQDLAGYSLGEADL 710

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK   EM K +  F+ GAS+ G+   +A  +F+ +  FA+Y FNKSH+ AY  +
Sbjct: 711  LRRAMGKKKVAEMQKHRSIFVKGASERGVDDKVADELFDQMVLFAEYCFNKSHSTAYGAV 770

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTA++K HYPV ++AA +T+     +K++++  +     I++MPP VN    DF    
Sbjct: 771  TYQTAYLKAHYPVAYMAALLTVNAGASDKVQRYIANCNAMGIEVMPPDVNASGTDFTPTG 830

Query: 833  NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +RI + L+A++ +G    R ++ +  AD PF SL D C R+ S  LNRR LESL+  GA+
Sbjct: 831  DRILFGLSAVRNLGDGAIRQLIASREADGPFQSLADLCDRLPSSVLNRRSLESLIHCGAM 890

Query: 892  DCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITLEKF 943
            D      +R QL+  LD +  +A    K+R +   N+F      A   G+    ++L   
Sbjct: 891  DALAPEANRAQLIADLDLLLDWASSRAKDRDSGQGNLFDLMASAADSAGSGPADLSLAPK 950

Query: 944  SVE----NSSVRFENEQRVLGFYFSGHPLDVYKP---ILRKMGIKGYEESVATIRGNNIR 996
            +      + S +   E+ ++GFY S HPL   KP   +L  +G+   +E     + + I 
Sbjct: 951  AAPVPDYHPSEKLRLEKELVGFYLSDHPLKQLKPPARLLAPIGLASLQEQADKAKVSAI- 1009

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              AMV   +Q  TRKG R+  +   +     EA  FP
Sbjct: 1010 --AMVSELRQVTTRKGDRMAVLQLEDLTGSCEAVVFP 1044


>gi|237745381|ref|ZP_04575862.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
 gi|229432610|gb|EEO42822.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
          Length = 1133

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/988 (38%), Positives = 593/988 (60%), Gaps = 61/988 (6%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +FVHL +H+ YSL EG  S++N L +       ++A+TD  N+F A+EF QKA   GI+P
Sbjct: 4   NFVHLNLHTEYSLSEGVNSIDNFLVRAKELGMNSLAVTDYANMFCAVEFYQKAKKMGIKP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIG +L I  +D              + S+ LL     GY+ L++L S +Y  ++ ++ +
Sbjct: 64  IIGLELPIFNKDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRE-L 111

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-FKKLFG-DRLYVNLQ 187
           ++    L+E  ++ LI L+   +G I +A   NSS      ++  + ++F  +  Y+ +Q
Sbjct: 112 KLNKEILKEY-SQDLIALSSSINGEIGKAILTNSSDEKINSIINEYIEIFSKENFYLEIQ 170

Query: 188 RHRGYDRYRESQVVQ-----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                +   E++++      LA  + L LVATNN  ++  + YE  DV++ +     V +
Sbjct: 171 A----NELSETKIINDKFYDLAKLNGLELVATNNVYYVDRDGYELQDVIICIQSGLKVKE 226

Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
           K+R R ++ + YLK++ EM     +   +A+EN   IA  C+  +       P +     
Sbjct: 227 KNRKRAISKELYLKSKDEMKRFLGEKFEKAIENANHIADLCNIEITFGNLQFPYY----- 281

Query: 301 DDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYH---AQDYRQRLDFELNVIARMKFS 354
            ++  E          +G++  L       I K Y     +D   RL++EL+VI +M +S
Sbjct: 282 -EVPSE---------YSGMDEYLKTICHTNIKKLYKENLTKDILDRLEYELSVIIKMGYS 331

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
           GYF++V DFI +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+S
Sbjct: 332 GYFIVVWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERIS 391

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           MPD DID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+
Sbjct: 392 MPDIDIDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDK 451

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           L KLI   P   +  + + ++    +    D  + ++++++ ++E   RH STHAAGI+I
Sbjct: 452 LAKLIS--PFQTLE-KTLKENVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILI 508

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
               L + VP+Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + 
Sbjct: 509 TKEDLDRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKN 568

Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
           + VDL  IP DD + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPG
Sbjct: 569 IDVDLYKIPLDDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPG 628

Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           P+ + +V  + NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD
Sbjct: 629 PLQSGMVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEAD 688

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           +LRRAMGKK    M + +E+FI  A KNG +   +  IFEL+ KFA YGFNKSH+ AYA+
Sbjct: 689 LLRRAMGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAM 748

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
           ISY TA+ K HYP  + AA MT E+     I  +  DA++  I++  P++N+P   F+V 
Sbjct: 749 ISYWTAYFKVHYPAFYYAAVMTSEISETGDIAYYFNDAKEHGIRVYSPNINSPSAYFEVK 808

Query: 832 DNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
           ++ I YSLAAIK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GA
Sbjct: 809 NDGITYSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGA 868

Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFSVEN 947
           LD    +R +   S+D +  Y+    K    +  N+F     T  DK  L   E F+++ 
Sbjct: 869 LDEIKGNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKTI-DKFNLAISEDFTLDE 927

Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPIL 975
              +   E+  LGFY S HPLD YK I+
Sbjct: 928 ---KLNKEKEFLGFYLSSHPLDRYKDII 952


>gi|116070442|ref|ZP_01467711.1| DNA polymerase III subunit alpha [Synechococcus sp. BL107]
 gi|116065847|gb|EAU71604.1| DNA polymerase III subunit alpha [Synechococcus sp. BL107]
          Length = 1172

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/1058 (37%), Positives = 606/1058 (57%), Gaps = 51/1058 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L +++++      PAIA+TD   ++ A+E  +      ++P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPSMVERAKELGMPAIALTDHGVMYGAIELLKLCKGTDLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IIG ++ +       +      P P       +V+L   A GY+ L++L S  +L     
Sbjct: 62   IIGNEMYV-------INGSIDDPQPKKEKRYHLVVLAKNAIGYRNLVKLTSISHLRGMRG 114

Query: 127  QSV--RICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            + +  R C+   L +  +EGLI+ T    G I +A      +VA      ++ +FGD  Y
Sbjct: 115  RGIFSRACVDKDLLQRYSEGLIIATACLGGEIPQAILRGRPEVARDVARWYQNVFGDDFY 174

Query: 184  VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H    DR   S++V++A    + LVATN++ +L+++D EAHD L+ V    ++S 
Sbjct: 175  LEIQDHGSPEDRIVNSEIVKIAEELNIQLVATNDAHYLTKQDVEAHDALLCVLTGKLISD 234

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296
            + R R T   Y+K   EM  +F+D      + +A+ NT ++A +      +    +PRF 
Sbjct: 235  EKRLRYTGTEYIKTEEEMGRLFTDHLDPDVVQKAITNTAKVAEKVEDYDILGKYQMPRFP 294

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              +           LR   + GL  RL   A      A++Y  R+  EL ++ +M F  Y
Sbjct: 295  IPD----GHTAVTYLREVTLQGLRDRLELKA--DDPIAENYADRMSHELEIMEQMGFPTY 348

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL+V D+I++A++ +IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMP
Sbjct: 349  FLVVWDYIRFAREQSIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMP 408

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL 
Sbjct: 409  DIDTDFCIERRCEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLA 468

Query: 477  KLIPNDPAHPVSLQA-IADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            KLIP     P  L+A I D+S    FRE  L DP+V   ++++ ++EG  +    HAAG+
Sbjct: 469  KLIPVVRGKPAKLKAMIGDESPNPEFREKYLGDPAVKHWVDMAMRIEGTNKTFGVHAAGV 528

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQ 591
            VI   PL QLVP+ R+    + +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +   
Sbjct: 529  VIAADPLDQLVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVS 587

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             G ++D   +P  D +T+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYR
Sbjct: 588  SGTRIDPDKLPPQDADTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYR 647

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+D  ++  + NRK+G+E I   H +++P+L ET G+++YQEQ+M+IAQ L+GYSL +
Sbjct: 648  PGPLDAGLIPKFINRKHGREAIDFAHEILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQ 707

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK   EM K +  F+ GA + G+   ++  +F+ +  FA+Y FNKSH+ AY
Sbjct: 708  ADLLRRAMGKKKVSEMQKHRGIFVEGAKERGVDVKVSDELFDQMVLFAEYCFNKSHSTAY 767

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
              ++YQTA++K HYPV ++AA +T+     +K++++  +     I++MPP +N   +DF 
Sbjct: 768  GAVTYQTAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDLNASLIDFT 827

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
               +RI + L+A++ +G    R ++E+   D PF SL D C R+ S  LNRR LESL+  
Sbjct: 828  PNGDRILFGLSAVRNLGDGAIRRLIESRENDGPFRSLADLCDRLPSSVLNRRGLESLIHC 887

Query: 889  GALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITL 940
            GA+D      +R QL+  LD +  +A    K+R +   N+F      A + G     +  
Sbjct: 888  GAMDAMDPNANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAAPAEDDGPTDLSMAP 947

Query: 941  EKFSVEN--SSVRFENEQRVLGFYFSGHPLDVYKP---ILRKMGIKGYEESVATIRGNNI 995
            +   V +   S +   E+ ++GFY S HPL    P   +L  +G+   EE     + + I
Sbjct: 948  KAAPVPDYPPSEKLRLEKDLVGFYLSDHPLKQLTPSSRLLAPIGLGSLEEQPDKAKVSAI 1007

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                M+   +Q  TRKG R+  +   +     EA  FP
Sbjct: 1008 ---TMITELRQVTTRKGDRMAILQLEDLTGSCEAVVFP 1042


>gi|116074620|ref|ZP_01471881.1| DNA polymerase III subunit alpha [Synechococcus sp. RS9916]
 gi|116067842|gb|EAU73595.1| DNA polymerase III subunit alpha [Synechococcus sp. RS9916]
          Length = 1177

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/1062 (37%), Positives = 607/1062 (57%), Gaps = 57/1062 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++      PA+A+TD   ++ A+E  +     GI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPQMVERAKELGMPALALTDHGVMYGAVELLKLCQGTGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ + +  ++    Q K        +V+L   A GY+ L++L S  +L     + +
Sbjct: 62   IIGNEMYV-VNGSIDDPQQKKE---RRYHLVVLAKNATGYRNLVKLTSISHLRGMRGRGI 117

Query: 130  --RICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
              R C+    LQ+  +EGLI+ T    G I +A      +VA      ++++FGD  Y+ 
Sbjct: 118  FSRACIDKHLLQQY-SEGLIVATACLGGEIPQAIMRGRPEVARDVARWYQEVFGDDFYLE 176

Query: 186  LQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V++A    + L+ATN++ +L+  D EAHD L+ V    ++S + 
Sbjct: 177  IQDHGSVEDRIVNVEIVKIAKELGIGLIATNDAHYLTRNDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI-- 296
            R R T   ++++  EM  +F D      + EA+  T E+A +      +    +PRF   
Sbjct: 237  RLRYTGTEFIRSEEEMGRLFVDHLDPAVVQEAIATTAEVAEKVEDYDILGRYQMPRFPIP 296

Query: 297  --EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                    +++  E  LR++      + LA+GA     +A+    RL +EL V+ +M F 
Sbjct: 297  DGHTPVSYLKEVTEQGLRDR------LSLAEGASIDAVYAE----RLVYELGVMEQMGFP 346

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFL+V D+I++A++  IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R S
Sbjct: 347  TYFLVVWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKS 406

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DR
Sbjct: 407  MPDIDTDFCIERRSEVIDYVTRRYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADR 466

Query: 475  LCKLIPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            L KLIP     P  L A+    + +  FRE    DP V R ++++ ++EG  +    HAA
Sbjct: 467  LAKLIPVARGKPAKLAAMIGEESPNPDFREKYQNDPVVKRWVDMAMRIEGTNKTFGVHAA 526

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL- 589
            G+VI   PL +LVP+ R+    + +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ + 
Sbjct: 527  GVVIAADPLDELVPLQRNNDGQV-ITQYYMEDVESMGLLKMDFLGLKNLTMIDKTLELVE 585

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            A  G  +D   +P  D +T+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++L
Sbjct: 586  ANFGESIDPDKLPPQDPDTFALLARGDLEGIFQLESSGMRQIVRDLRPSSLEDISSILAL 645

Query: 650  YRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            YRPGP+D  ++  + NRK+G+E I   H  ++P+L+ET G+++YQEQ+M+IAQ L+GYSL
Sbjct: 646  YRPGPLDAGLIPKFINRKHGREAIDFAHQALEPILQETYGIMVYQEQIMKIAQDLAGYSL 705

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             EAD+LRRAMGKK   EM K +  F+ GAS+ G+ + IA  +F+ +  FA+Y FNKSH+ 
Sbjct: 706  GEADLLRRAMGKKKVSEMQKHRGIFVKGASERGVDEKIADELFDQMVLFAEYCFNKSHST 765

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AY  ++YQTA++K HYPV ++AA +T+     +K++++  +     I++MPP VN   +D
Sbjct: 766  AYGAVTYQTAYLKAHYPVAYMAALLTVNAGASDKVQRYISNCNAMGIEVMPPDVNASGID 825

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F    +RI + L+A++ +G    RH++ +   D PF+SL D C R+ S  LNRR LESL+
Sbjct: 826  FTPTGDRILFGLSAVRNLGDGAIRHLIASRQEDGPFESLADVCDRLPSSVLNRRSLESLI 885

Query: 887  FAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----------AHEKGTF 934
              GALD      +R QL+  LD +  +A    K+R +   N+F                 
Sbjct: 886  HCGALDALEPKANRAQLMADLDLLLDWASSRAKDRESGQGNLFDLMAAATAAEGEGANDL 945

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP---ILRKMGIKGYEESVATIR 991
            S           + + +   E+ ++GFY S HPL    P   +L  +G+   EE     +
Sbjct: 946  SMAPKAPPVPDYHPTEKLRLEKDLVGFYLSDHPLKQLTPPAKLLAPIGLGSLEEQADKAK 1005

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + I   AMV   +Q  TRKG R+  +T  +     EA  FP
Sbjct: 1006 VSAI---AMVSEYRQVTTRKGDRMAVLTLEDLTGSCEAVVFP 1044


>gi|83814834|ref|YP_445111.1| DNA polymerase III, alpha subunit [Salinibacter ruber DSM 13855]
 gi|294506988|ref|YP_003571046.1| DNA polymerase III, alpha subunit [Salinibacter ruber M8]
 gi|83756228|gb|ABC44341.1| DNA polymerase III, alpha subunit [Salinibacter ruber DSM 13855]
 gi|294343316|emb|CBH24094.1| DNA polymerase III, alpha subunit [Salinibacter ruber M8]
          Length = 1166

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/984 (38%), Positives = 588/984 (59%), Gaps = 39/984 (3%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P+F HL  H+ YSLL+GA  ++++++       PA+AITD  NL+   EF   A  + +Q
Sbjct: 2   PNFSHLHCHTQYSLLDGAAGIDHLIESAERRDIPAVAITDHGNLYGVPEFYTTAQKSDVQ 61

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PIIGC+        L  +       PT    VLL     GY+ L++L S  +L +     
Sbjct: 62  PIIGCEF------YLTPSGIQDQSDPTRYHQVLLAKNQTGYENLMQLSSTSFL-EGFYYK 114

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            RI L  L++   EGL+  T    G + +       + A+++   +  +FGD  Y+ +Q 
Sbjct: 115 PRIDLDLLRK-HHEGLVATTCCLQGQVPQMILNQGEEAAQEKFEEYLDIFGDDYYIEIQD 173

Query: 189 HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H   D++  ++V+ Q A  +++ ++ATN+  ++ ++D+EA D+L+ +      +  DR R
Sbjct: 174 HDIDDQHTVNEVLLQWARAYDVEVLATNDVHYVDQQDHEAQDILLCLQTGDDYNDPDRMR 233

Query: 248 VTPDH-YLKNRSEMVSIFSDLPE-----ALENTVEIARRCSFILQVHAPILPRF-IEKEC 300
            + D  YLK+ + M+   + +PE     AL NT ++A +CSF L +   ++P + I +  
Sbjct: 234 FSNDQFYLKDSAGMMEALTGIPEEFQREALVNTNKVADKCSFDLPMGDLLMPHYPIPEGF 293

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
           +D+    +  LR+      + R            Q    RL+ EL +IA   +SGYFLIV
Sbjct: 294 EDM----DGYLRHLTFERAKERYGDPL------PQTVVDRLNHELGIIADEGYSGYFLIV 343

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            DF   A++ ++ VGPGRGS AGS  +Y L IT++DPL + LLFERFLNP+R+SMPD DI
Sbjct: 344 QDFTDAARELDVRVGPGRGSAAGSCVSYCLGITNVDPLEYDLLFERFLNPERVSMPDIDI 403

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DF    R++VI YV  KYG E V QI+TFG++ AK A+RDV R L +P  + D + K+IP
Sbjct: 404 DFDDRGREKVIDYVVEKYGQENVCQIVTFGTMGAKTAVRDVSRVLDIPLDRADEIAKMIP 463

Query: 481 NDPAHPVSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
           + P   +  QA  ++  FR  + A +P V ++++ ++ LEG  RH   HAAG++I    +
Sbjct: 464 DGPGVDLE-QAFDENPDFRALKDANNPEVSKMMQYAEVLEGSVRHTGVHAAGVIIAPGEI 522

Query: 540 SQLVP--MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596
           S  VP  + +    ++  TQ++  W+E+ GL+K DFLGLKTLTL++ +++ +   R V +
Sbjct: 523 SDYVPVSVAKSKGEEVVTTQYDGDWVEEFGLLKMDFLGLKTLTLIEDAVELVEDTRDVDL 582

Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
           ++  IP DD  T+ L     T+ IFQ ES+GMR+ L  ++P  I D+IA+ +LYRPGP++
Sbjct: 583 NIDDIPLDDEATFELFQRGDTVSIFQFESTGMREHLRKLKPTEIGDLIAMNALYRPGPME 642

Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
           NI  Y  RK+G+E++   HPL++ +L+ T G+ ++QEQVMQ+A+ L+G+SL EAD+LRRA
Sbjct: 643 NIPTYVARKHGQEEVEYPHPLLEDILEPTYGIAVFQEQVMQMARELAGFSLGEADILRRA 702

Query: 717 MGKKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
           MGKK ++ M KQ+E+FI G  ++N I +  A  +F+++ +FA YGFNKSH+AAY++++Y+
Sbjct: 703 MGKKKEKLMRKQREKFIKGCQAENDIPEDEADELFDIINEFAGYGFNKSHSAAYSLVAYR 762

Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----- 830
           TA++K HYP EF+AA+MT EMDN +K+ K  ++AR   ++++PPS+N     F V     
Sbjct: 763 TAYLKAHYPPEFMAAAMTNEMDNTDKLSKVLEEARSMGLEVLPPSINRSQSRFTVEQGPD 822

Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           G  R+ + LAAIK  G      +++A  +  PFDS+ D    VD   +N+R LE+L  AG
Sbjct: 823 GAYRVRFGLAAIKNAGEKAINALIDAREEHGPFDSIFDLTKNVDLGTVNKRTLEALAQAG 882

Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENS 948
           ALD     R QL++ +D   +Y Q V+ +R     ++F + + GT + +  L        
Sbjct: 883 ALDDLEGHRAQLMEIMDKAVRYGQKVQHDRMAGQNSLFGNGDAGTEAMQPGLPDVETWAK 942

Query: 949 SVRFENEQRVLGFYFSGHPLDVYK 972
           S R + E  VLGFY SGHPLD Y+
Sbjct: 943 SQRLKEEHEVLGFYVSGHPLDEYR 966


>gi|229072106|ref|ZP_04205315.1| DNA polymerase III subunit alpha [Bacillus cereus F65185]
 gi|228711040|gb|EEL63006.1| DNA polymerase III subunit alpha [Bacillus cereus F65185]
          Length = 1108

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/1033 (37%), Positives = 612/1033 (59%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306
             D +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     E  DI   
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     GL  R  +    K  H +    RLD ELNVI+RM FS YFLIV DF+++
Sbjct: 284  ----LRRVCEEGLRKRYGE---PKEVHIK----RLDHELNVISRMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            +    +YA               A + G   D +   K+ V+   + F      E+ VLG
Sbjct: 870  IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|229112070|ref|ZP_04241613.1| DNA polymerase III subunit alpha [Bacillus cereus Rock1-15]
 gi|228671393|gb|EEL26694.1| DNA polymerase III subunit alpha [Bacillus cereus Rock1-15]
          Length = 1108

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/1033 (36%), Positives = 612/1033 (59%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306
             D +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     E  DI   
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     GL  R  +    K  H +    RLD ELNVI+RM FS YFLIV DF+++
Sbjct: 284  ----LRRVCEEGLRKRYGE---PKEVHIK----RLDHELNVISRMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E   +K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEEREEKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            +    +YA               A + G   D +   K+ V+   + F      E+  LG
Sbjct: 870  IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|125973779|ref|YP_001037689.1| DNA polymerase III DnaE [Clostridium thermocellum ATCC 27405]
 gi|281417936|ref|ZP_06248956.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
 gi|125714004|gb|ABN52496.1| DNA polymerase III catalytic subunit, DnaE type [Clostridium
            thermocellum ATCC 27405]
 gi|281409338|gb|EFB39596.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
          Length = 1181

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/1076 (36%), Positives = 623/1076 (57%), Gaps = 78/1076 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA  + +++ +       +IAITD   ++  ++F ++A   GI+PI
Sbjct: 5    FVHLHVHTEYSLLDGANRIKDLIRRTKELGMDSIAITDHGVMYGVVDFYKEAVNNGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +GC+  I      +   QG   + + P  +VLL     GY+ L+++VS +   +      
Sbjct: 65   LGCE--IYTAKGSRFDKQGG--WDSDPGHMVLLAKNNTGYKNLMKIVS-IGFTEGFYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+ +  L++  +EGLI ++   SG I +A   N+ + A++  L    +FG D  Y+ LQ 
Sbjct: 120  RVDMEVLEKY-SEGLIAMSACLSGDIPKAILNNNYEKAKELALKLNSIFGQDNFYLELQM 178

Query: 189  HRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            + G +       Q+++L+    +PLVATN++ +L  ED  AH++L+ +     ++ +DR 
Sbjct: 179  N-GIEEQNIVNQQLIKLSRETGIPLVATNDAHYLRREDARAHEILLCIQTGKSINDEDRM 237

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R + D  Y+K+  EM+S+F ++PEA+ NTV IA  C+  L+ +   LP+F   +  D  K
Sbjct: 238  RFSSDDFYIKSPEEMISLFRNIPEAISNTVRIADMCNVELEFNKLHLPKF---DVPD-GK 293

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +    LR     G E R+      K    ++   RL++EL+VI +M +  YFLIV+DFI+
Sbjct: 294  DPFEYLRALCYEGFE-RI----YGKDNRDEEKINRLEYELSVIKQMGYVDYFLIVSDFIR 348

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK+  I VGPGRGS AGS  AY L IT+IDPL+++LLFERFLNP+R+SMPD DIDFC +
Sbjct: 349  YAKEKGIMVGPGRGSAAGSFVAYCLGITNIDPLKYNLLFERFLNPERISMPDIDIDFCFE 408

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV  KYG +RVAQIITFG++ A+A +RDVGRAL +PY +VD + K+IP     
Sbjct: 409  RRQEVIDYVVEKYGKDRVAQIITFGTMAARAVIRDVGRALDIPYGEVDAIAKMIPFQIGM 468

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+  +   R+    D  V  L++ ++ LEG+ RHASTHAAG+VI   PL++ VP+
Sbjct: 469  SIE-KAMELNPELRQRYNDDERVKELIDTAKLLEGMPRHASTHAAGVVISREPLTEYVPL 527

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
             R    D   TQF M  +E+ GL+K DFLGL+TLT+++ ++  + +   + V +  +  D
Sbjct: 528  QRS--EDSITTQFPMGILEELGLLKMDFLGLRTLTVIRDAVALIKKNHNIDVKIDELQMD 585

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D   + L+    T G+FQLES+GM Q ++ +QP  +EDIIA +SLYRPGP+D I  Y   
Sbjct: 586  DPNVFKLIGEGRTAGVFQLESAGMTQFMKELQPASLEDIIAGISLYRPGPMDQIPRYLRN 645

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            KN  E +   HPL++ +L  T G ++YQEQVMQI + L+GYS+  +D++RRAM KK    
Sbjct: 646  KNNPELVKYDHPLLENILNVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMAKKKVSV 705

Query: 725  MDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            M+++++ FI             GA +NG+ +  A  IF+ +  FA Y FNKSHAAAYAVI
Sbjct: 706  MEQERKNFIYGIDDDNGNIIVKGAVRNGVDEETANKIFDEMMDFASYAFNKSHAAAYAVI 765

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTAW+K +YPVEF+AA +   M + +KI ++  + R+  I+++PP +N   V F V +
Sbjct: 766  AYQTAWLKCYYPVEFIAALLNSFMGSSDKISQYVHECRKLGIEVLPPDINESDVRFTVVN 825

Query: 833  NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             +I + LAA+K VG    R I+ E + +  + S  +F  RVD K +N+R +ESL+ +GA 
Sbjct: 826  GKIRFGLAAVKNVGENAVRSIIDERNINGNYKSFRNFLERVDGKDVNKRCIESLIKSGAF 885

Query: 892  DCFGYSRMQLLQSLDNIQK------------------YAQWVEKNRTNKHENIFAHEKGT 933
            D  G  R +L+ + + + +                   A   E  + ++   ++  ++  
Sbjct: 886  DSMGVYRSRLMNAYEKMMEGISSQRKKSMEGQLSIFDMALNTEDGKKDEKHQLYPEDEDI 945

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK-------PILRKMGIKGYEES 986
            + D   + ++S     +    E+ +LG Y SGHPL  ++        +  K  +   +E+
Sbjct: 946  YPD---IPEYS---QKILLSMEKEMLGLYISGHPLSEFEKEFSEVVTLYSKDMVSDADEN 999

Query: 987  --VATIRGN-------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              V T+ GN        + +  ++ S++ K T+  + + +VT  +     E   FP
Sbjct: 1000 GEVITVEGNKGLKDGMTVTVGGIITSRKTKTTKNNNLMAFVTLEDLYGTMEIIVFP 1055


>gi|182624555|ref|ZP_02952338.1| DNA polymerase III, alpha subunit [Clostridium perfringens D str.
           JGS1721]
 gi|177910363|gb|EDT72744.1| DNA polymerase III, alpha subunit [Clostridium perfringens D str.
           JGS1721]
          Length = 1192

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1010 (37%), Positives = 593/1010 (58%), Gaps = 64/1010 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6   FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71  IGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           +GC++ +  +   +K  ++    +     +VLLV   +GY+ L+++VS +  ++      
Sbjct: 66  LGCEVYVVPKSRKIKSNDEDNKTY----HLVLLVKNEKGYENLMKIVS-VASIEGFYYKP 120

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           RI   +L+E  +EG+I L+    G + +A    +   A +    ++  F D  Y+ LQ H
Sbjct: 121 RIDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAATFYRDTFKDGFYLELQNH 179

Query: 190 RGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R 
Sbjct: 180 GIEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRY 239

Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-----------I 296
             D  YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F           +
Sbjct: 240 PSDQFYLKSPEEMWDMFDYVPEALENTLKIAEECNFDYEFHVSKLPKFPLPEGVEPFEYL 299

Query: 297 EKECDD--IQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            K C D  I + EE   L+ K +  ++     G        ++  +RL++EL VI +M +
Sbjct: 300 RKTCFDGLIDRLEELRPLKEKGIYDIDKVYEIGE--NNDKVKEDIERLEYELGVIKQMGY 357

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFERFLNP+R+
Sbjct: 358 VDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERFLNPERV 417

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
           SMPD D DFC + R  VI YV  KYGH+ V+QIITFG++ A+A +RDVGRA+   Y++VD
Sbjct: 418 SMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMNYTYAEVD 477

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
           R+ K IP      +  +A+  +   +     +  V  L+++S++LEGL RH+STHAAG+V
Sbjct: 478 RIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVKELIDVSRRLEGLPRHSSTHAAGVV 536

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QR 592
           I  +PL + VP+ ++  S   VTQF+M  +E+ GL+K DFLGL+TLT+++ ++D +   R
Sbjct: 537 IASQPLVEYVPLQKNDES--IVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAVDMIKYNR 594

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
           GV++DL  + FDD E Y ++    T+G+FQLES+GM   ++ ++PDC+EDIIA +SLYRP
Sbjct: 595 GVEIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIAGISLYRP 654

Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           GP+  I  Y + K   + +  I P ++ +L  T GV++YQEQVM+I + L+GYS+  +D+
Sbjct: 655 GPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGYSMGRSDL 714

Query: 713 LRRAMGKKIKEEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYG 760
           +RRAM KK  + M+++++ FI             G  +NGIS   A  IF+ +  FA Y 
Sbjct: 715 VRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSMMDFASYA 774

Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
           FNKSHAAAYAVI +QTA++  +YPVEFLAA +   M N +K+ ++ + A +  IQ++PP 
Sbjct: 775 FNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLGIQVLPPD 834

Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNR 879
           +N     F V  + I + + AIK VG     +I ++  +K  F SL DFC+++D   +N+
Sbjct: 835 INESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGRFTSLMDFCNKIDLSIVNK 894

Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
           R +ESL+ AG  D     R QLL   + I        K   +   ++F            
Sbjct: 895 RSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFG----------A 944

Query: 940 LEKFSVENSSVRFEN------------EQRVLGFYFSGHPLDVYKPILRK 977
           L++ S  N  +R+ N            E+ + G Y SGHPLD Y+  L++
Sbjct: 945 LQEESESNLEIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKE 994


>gi|187776689|ref|ZP_02993162.1| hypothetical protein CLOSPO_00204 [Clostridium sporogenes ATCC 15579]
 gi|187775348|gb|EDU39150.1| hypothetical protein CLOSPO_00204 [Clostridium sporogenes ATCC 15579]
          Length = 1185

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/1070 (36%), Positives = 625/1070 (58%), Gaps = 53/1070 (4%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            EK P +V L  H+ YSLL+ +  +++++ +       +IAITD   ++  ++F ++A   
Sbjct: 8    EKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKEAIKQ 67

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIGC++ +  + ++ +  Q K        +VLLV    GY+ L+E+VS+  + +  
Sbjct: 68   GIKPIIGCEIYVAAK-SMYIKQQDKEN--ETHHLVLLVKNEIGYKNLMEIVSKASV-EGF 123

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R+   +L+E  +EGLI L+    G +       + + ++K  L +K +F +  Y+ 
Sbjct: 124  YYKPRVDHEFLKE-HSEGLIALSACLGGEVQSNILKGNLEKSKKAALIYKDIFKEGFYLE 182

Query: 186  LQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H   ++ + ++ +VQ++   ++PLVATN+  ++ +EDY++HD+L+ +     V +++
Sbjct: 183  LQYHGMEEQLKVNETLVQMSKELDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTVEEEN 242

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDD 302
            R R   D  YLK+  EM   FS +PEALENTV+I+ +C+F    H   LP+F +E+  D 
Sbjct: 243  RMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEQCNFDYNFHESKLPKFPLEEGIDP 302

Query: 303  IQKEEE-------------NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
             +   E              +  NK  +  E+ LA GA  K   A D  +RL++EL++I 
Sbjct: 303  YEYLREICFKGLFSRYEILKDFMNKPFSMDEI-LAYGAENK--EAFDLIERLNYELSIIK 359

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+FERFLN
Sbjct: 360  QMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLN 419

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            PDR+SMPD D DFC +RR EVI YV  KYG   V+QIITFG++ A+A +RDVGRA+  PY
Sbjct: 420  PDRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDVGRAMNYPY 479

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            ++VDR+ K+IP      ++ +A+  +   +EA   +  V  L+++++ LEGL RH STHA
Sbjct: 480  AEVDRIAKMIPTVLNITIN-KALELNPELKEAYDNEERVKELIDVARALEGLPRHTSTHA 538

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            AG+VI  +PL   VP+ ++  S   VTQF M  +E+ GL+K DFLGL+TLT+++ ++  +
Sbjct: 539  AGVVIASQPLVNYVPLQKNEES--IVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVRII 596

Query: 590  AQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             + +G+ +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +EDIIA +S
Sbjct: 597  KENKGIDIDLDTIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGIS 656

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+  I  Y   KN    I      ++P+L  T   I+YQEQVMQI + L+GYS+ 
Sbjct: 657  LYRPGPMAEIPRYIANKNNPLNIEYATEKLEPILSVTYNCIVYQEQVMQIVRDLAGYSMG 716

Query: 709  EADVLRRAMGKKIKEEMDKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYG 760
             +D++RRAM KK  + M+ +++ FI         G   NGI + +A N+F+ +  FA Y 
Sbjct: 717  RSDLVRRAMSKKKHDVMELERKNFIYGNKEEGVKGCINNGIDEKVANNLFDSMMDFASYA 776

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSHAAAYAV+ +QTA++  +YP EF+AA +     + +K+  +   A    I+I+ P+
Sbjct: 777  FNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDSDKVSFYVNFAETLGIEIVAPN 836

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNR 879
            +N    +F V DNRI + L A+K VG     +I+ +   K  F  L DF ++VD+  +N+
Sbjct: 837  INESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKGKFIDLSDFFNKVDTSIINK 896

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R++ESL+ AGA DC    R ++L   + I    Q  ++N      N+F          + 
Sbjct: 897  RLVESLIKAGAFDCLNVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNKESSMD 956

Query: 940  LEKFSVENSSVRF--ENEQRVLGFYFSGHPLDVYKPILR------------KMGIKG-YE 984
            ++  +++    ++  + E+ + G YFSGHPL+ Y+  L+            K  ++G   
Sbjct: 957  IKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKVQISHHISDIISKESLEGNMV 1016

Query: 985  ESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +++ +I+ G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1017 DAINSIKDGDKVIVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|284047929|ref|YP_003398268.1| DNA polymerase III, alpha subunit [Acidaminococcus fermentans DSM
            20731]
 gi|283952150|gb|ADB46953.1| DNA polymerase III, alpha subunit [Acidaminococcus fermentans DSM
            20731]
          Length = 1138

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/1040 (37%), Positives = 598/1040 (57%), Gaps = 39/1040 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YSLL+G+  +  ++        PA+AITD   ++  +EF Q+   AGI+PI
Sbjct: 4    FVHLHTHTQYSLLDGSCRIPELVQYAKELGMPALAITDHGVMYGVIEFYQECEKAGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ I    +L  + + ++    +  ++LL     GYQ L++LVS +  ++      R
Sbjct: 64   IGCEVYITSGSHLDKSLETRS---KLYHLILLAENRTGYQNLMKLVS-IGEVEGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            I    L+   +EGLI L+   +G + R       + AEK +L +  +FG D  Y+ +Q H
Sbjct: 120  IDKDVLRRY-SEGLICLSACIAGEVPRHILRGELETAEKTMLEYLDIFGRDHYYLEIQNH 178

Query: 190  RGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +     Q ++ LA  H + LVATN+  ++ +ED    D+L+ +  +T      R R 
Sbjct: 179  GLPEEATVRQELRRLAQKHGIKLVATNDLHYIRKEDASGQDILLCIQTNTRYLDPQRMRF 238

Query: 249  TPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D +YLK+R EM  +F +  EAL+NT+EIA RC+             ++ E   +   E
Sbjct: 239  NNDSYYLKSREEMEELFPEDQEALDNTLEIAERCN-------------VQLEFGHLLLPE 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                  + + G   +L +      Y   D   R+R+++EL +I +M +SGYFLIV DFI 
Sbjct: 286  FPLPPGETMDGYLRKLCEEGFPSRYPEDDGTARKRMEYELGIIRQMGYSGYFLIVWDFIN 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            ++++++IPVGPGRGS AGS+ AY   IT IDPL+++L+FERFLNP+R+SMPD D D C  
Sbjct: 346  YSRRHDIPVGPGRGSAAGSIVAYLTGITSIDPLKYNLIFERFLNPERVSMPDIDTDICYV 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            +R  V+ Y+  KYG   VAQIITFG+L AKAA++DVGRA+ +P + V+++ KLIPN P  
Sbjct: 406  KRHLVVDYLARKYGESHVAQIITFGTLAAKAAVKDVGRAMDIPLNVVNQVNKLIPNTPG- 464

Query: 486  PVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +L+   + SR  RE R  DPS+ +LL+ +QK+EG+ RH STHAAG+VI    L+  VP
Sbjct: 465  -TTLKGALEGSRELRELRDGDPSIAQLLDFAQKVEGMPRHTSTHAAGVVITPGELTDYVP 523

Query: 545  MYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
            +     SD       TQ++    E  GL+K D LGL+TLT++  +L  + + +G +VD+ 
Sbjct: 524  LQITSSSDDEHEYICTQYDKDRSESLGLLKMDLLGLRTLTVIDDALKMIKKNQGTEVDIR 583

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I   D +T  +L    T  +FQ+ES GM + ++ + P+  ED+I LV+LYRPGP+ + +
Sbjct: 584  TIDLHDPKTCRMLCKGDTAAVFQMESDGMTRLMKQLAPEGFEDLIPLVALYRPGPLGSGM 643

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
               +   ++G+     +HPL++P++ +T GVI+YQEQVMQI   L G++L EAD+LRRAM
Sbjct: 644  AEDFIAGRHGRRTAQVLHPLMEPIVADTYGVILYQEQVMQIVSALGGFTLGEADILRRAM 703

Query: 718  GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            GKK  + +D  KE+F+ GA K +GIS+ +   IF LL  FA YGFNKSH+AAYA+++Y T
Sbjct: 704  GKKKAKLLDSMKEKFLDGAQKLHGISRELGSEIFALLQHFAGYGFNKSHSAAYALVAYHT 763

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            AW+K +YPVE++AA +   +   +K+  +    R   IQ++PP +NT    F V  + I 
Sbjct: 764  AWLKANYPVEYMAAFLNSIITVADKVSWYIGVCRDMGIQVLPPDINTSEAGFSVDGHTIR 823

Query: 837  YSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            + L AIK VG      I+E    + PF    DF  RVD  K+N+RV+E+L+  G+++ FG
Sbjct: 824  FGLGAIKSVGDAAVTVILEERKKRGPFRDFFDFTRRVDLSKVNKRVVEALIKCGSMNGFG 883

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R QLL  +D   + A   +++R      +F  E    ++ I +        +     E
Sbjct: 884  LRRSQLLAIMDPALEAAASEQRDRITGQLGLFGEEDIASANTIPIPNLPEIPKAEILRLE 943

Query: 956  QRVLGFYFSGHPLDVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            + ++GFY +GHPLD Y+  LR++   I+  EE+     G  I +  ++   + + T+ G 
Sbjct: 944  RELIGFYVTGHPLDAYRNALRRLTPLIRCTEENYKD--GERIAVGGIITDLRLRSTKNGD 1001

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
            R+      +         FP
Sbjct: 1002 RMASFVLEDLTGSLTVIAFP 1021


>gi|282849948|ref|ZP_06259331.1| putative DNA polymerase III subunit alpha [Veillonella parvula ATCC
            17745]
 gi|282580385|gb|EFB85785.1| putative DNA polymerase III subunit alpha [Veillonella parvula ATCC
            17745]
          Length = 1135

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/1015 (36%), Positives = 614/1015 (60%), Gaps = 39/1015 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +SLL+G   L +++ +     QPA+AITD  N+++A+ F ++  A G++PI
Sbjct: 4    FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY---LLDQGKQ 127
            IGC++ +   +N +           +  ++LL  T EGY+ L+++VS+     +L + + 
Sbjct: 64   IGCEVYV--TENSRFDRPEGRSRERLKHLILLAETMEGYRNLVKIVSKASTEGMLYRPRA 121

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
               +   +     ++G+I L+    G I +    ++ + A++ +  + + +G D  ++ +
Sbjct: 122  DRDLLRQY-----SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEI 176

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   +  + + ++++L+  + L +VA+N+  ++ +ED +A D+ + ++     ++ DR
Sbjct: 177  QNHGLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDR 236

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             +   D  YLK+  EM  +F  +P A+ENT++IA RC+         LP F      D+ 
Sbjct: 237  LKFPNDEFYLKSGDEMAELFGHIPGAIENTLKIADRCNVEFNFDEHHLPHF------DVP 290

Query: 305  KEEENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            + E ++   + V   E+ RL       G  +++ ++RLD+EL+VI  M F  YFLIV D+
Sbjct: 291  EGETSKTYLRKVCEREIPRLY------GETSEELQKRLDYELDVIGTMGFEDYFLIVWDY 344

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC
Sbjct: 345  VRYAREHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFC 404

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++R + I YV  KYG  RV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+ 
Sbjct: 405  YEKRGQAIEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNEL 464

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++L         ++   +D +V  L +  +KLEG+ R++STHAAG+VI   PL   V
Sbjct: 465  G--ITLDKALQGKDLKDLYESDSNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHV 522

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
            P+ ++   +  VTQ++   IE+ GL+K DFLGL+TLT++  +L  + A RG+ +DL  IP
Sbjct: 523  PV-QNANDEGFVTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIP 581

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD     +LT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +V  
Sbjct: 582  LDDKAACDILTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVAD 641

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + +R++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK
Sbjct: 642  FIDRRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKK 701

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             +  +  Q+E FI G+  NGI +++A  +F+LL  FA YGFNKSH+AAYA I+YQTA++K
Sbjct: 702  KESVLKAQRESFIQGSINNGIEESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLK 761

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HY  EF+AA+MT  M N++K+  +    ++ N++++ P +N     F V D+ I + L 
Sbjct: 762  AHYFPEFMAATMTSFMQNMQKLTYYINACKKHNVKVLGPDINYSERSFAVQDDAIRFGLG 821

Query: 841  AIKGVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK VG     R I E +    +  + DFC RVD+K +N+R+LESL+  GA+D F  +R 
Sbjct: 822  GIKNVGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGAMDGFKENRN 881

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
            QLL   ++ Q      +K+      N+F    E   F     +E  S ++   + ++E+ 
Sbjct: 882  QLLHMYESAQAVGAKEQKDAAMGTMNLFGDMEEAVDFIPVPNVEDLSEDD---KLKDEKE 938

Query: 958  VLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
              GFY +GHPL  Y   L  +  +    E+     G  I    ++ +K  + T++
Sbjct: 939  YTGFYITGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKSDRMTKR 993


>gi|148926683|ref|ZP_01810364.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145845202|gb|EDK22297.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 1200

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1001 (39%), Positives = 590/1001 (58%), Gaps = 55/1001 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4   FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  +   D L      +  F     + L      GYQ L+ L S+ Y+  +G     
Sbjct: 64  IGMEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180
                L E  +EGLI  +    G +        +R   F +   + A++  L +KK+F D
Sbjct: 117 RINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y  + RH  G  R  +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
           ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237 LNDPDRIRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 296 --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
               K+ + I  EE  E                GLE RL    I +  H ++Y+QRL+ E
Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLEERLK--FIDESKH-EEYKQRLEVE 353

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523
             M     D L KL+P +    ++L A  + + + +E     P    + E ++ LEGL R
Sbjct: 474 CDMSIQDADELAKLVPEELK--ITLDAAYEKEPKIKEFIDRHPKGPEVWEYARALEGLNR 531

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581
           +A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT+
Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591

Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           +  ++  + +R  K +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  
Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
           EDIIA+++LYRPGP+++ ++  + +RK+G + I      ++ +L+ T GVI+YQEQVMQI
Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKNIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA 
Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRVKAEDLWELIVKFAG 771

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++P
Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831

Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
           PS+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D 
Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T 
Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTS 951

Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             ++      E+F V     + E E+ +LG Y SGHPLD +
Sbjct: 952 GVQVNFTPKNEEFEVME---KLEYEKEILGIYVSGHPLDRF 989


>gi|323142354|ref|ZP_08077186.1| DNA polymerase III, alpha subunit [Phascolarctobacterium sp. YIT
            12067]
 gi|322413238|gb|EFY04125.1| DNA polymerase III, alpha subunit [Phascolarctobacterium sp. YIT
            12067]
          Length = 1135

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/1036 (36%), Positives = 616/1036 (59%), Gaps = 38/1036 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+GA  ++ ++         ++AITD   ++ A+EF Q+   AGI+PI
Sbjct: 5    FTHLHVHTEYSLLDGASKIHELVAYAKELGMDSLAITDHGAMYGAVEFYQECTKAGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +    +L+  N+G      +  ++LL     GY  L+++VS +  L+      R
Sbjct: 65   IGCEVYLSKGSHLEKNNRG------MYHLILLAENDTGYHNLMKIVS-IGQLEGFYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +    L+    EG+I L+   +G + +    ++ + A + +  +  +FG +  ++ +Q H
Sbjct: 118  VDKDVLRTY-HEGVICLSACVAGEVPQMILQDNLEGARRCIQEYIDIFGKENYFLEIQDH 176

Query: 190  RGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               + ++ S ++ QLA    L LVATN+  ++ ++D  A D+L+ +  ++ V + DR R 
Sbjct: 177  DLDEEHKVSAELKQLAQEFGLGLVATNDLHYVQQKDAAAQDILLCIQTTSTVDEPDRMRF 236

Query: 249  TPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D +YLK+  EM ++F D PEAL NT +IA RC+  ++    +LP F   E  D     
Sbjct: 237  NNDSYYLKSYDEMEALFGDCPEALSNTNKIADRCNVKMEFGHLLLPEFPVPEGFD----- 291

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                   AV+ L   L + A+ K Y   D   R+RLDFEL++I  M ++ YFLIV DFI 
Sbjct: 292  -------AVSYLR-HLCEEALPKRYEVVDEKVRKRLDFELDIINTMGYACYFLIVWDFIN 343

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            + + ++IPVGPGRGS AGS+ AY L IT+I+PLR+ LLFERFLNP+R+SMPD D DFC  
Sbjct: 344  YCRSHDIPVGPGRGSAAGSIVAYLLRITNIEPLRYHLLFERFLNPERVSMPDIDTDFCYV 403

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            +R++V+ YV  +YG ERVAQIITFG+LQA+AA+RDVG+AL M Y +VD + KLIP +   
Sbjct: 404  KRNQVLDYVVRRYGQERVAQIITFGTLQARAAVRDVGKALGMSYGEVDEIAKLIPRELG- 462

Query: 486  PVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             ++L+   + S+ FR+A  + P V +L++++Q +EGL R+A THAAG++I    +   VP
Sbjct: 463  -ITLEKALNGSKDFRQAYDSRPEVKKLIDLAQSVEGLPRNAGTHAAGVIIAPHNMKNYVP 521

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            + +     + +TQ++   +E+ GL+K DFLGL+TLT++   + F+ +  G +VD+  IP 
Sbjct: 522  LQQGSEGGV-ITQYDKNKVEELGLLKMDFLGLRTLTVIGDCIRFIRETTGEEVDIDNIPL 580

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
             D  T  +L    T  +FQLES+G+ + +  + P+  ED+I LV+LYRPGP+   +   +
Sbjct: 581  ADEATCAMLRRGETACVFQLESAGITKLVMDLAPESFEDLIPLVALYRPGPLGTGMAEDF 640

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               ++G+     +HPL++P+LK+T GVI+YQEQVMQI   L+G++L +AD+LRRAMGKK 
Sbjct: 641  IAGRHGQRTAKVLHPLMEPILKDTYGVILYQEQVMQITSALAGFTLGQADILRRAMGKKK 700

Query: 722  KEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             +E+D  ++ FI GA K + I + ++  IF LL  FA YGFNKSH+ AYA+++Y+TA++K
Sbjct: 701  AKELDSMRQSFIDGAKKLHDIPEELSDQIFSLLQHFAGYGFNKSHSVAYALVAYETAYLK 760

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSL 839
             H+  +F AA +   + + +K+  +    R  N++I+PP VN    +F V  N  I + L
Sbjct: 761  AHWRPQFYAAFLNSIIGDADKVSWYINVCRNDNVKILPPDVNESGHNFTVHKNSSIRFGL 820

Query: 840  AAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            A IK  G      I+ A  +  PF SL DFC RV+ + +N+RV+E+++  GA+D FG  R
Sbjct: 821  AGIKNTGDAAVDAIISARNEGGPFKSLTDFCCRVNMRVVNKRVIENMIKCGAMDSFGARR 880

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             Q+L  ++         ++++ N    +F  +    ++ I L         +  +NE+ +
Sbjct: 881  SQMLSIIEQAVDLGAACQRDKANGQLGLFGDDSFGVTE-IKLPPLPEIPKQLILQNEKEI 939

Query: 959  LGFYFSGHPLDVYKPILRK-MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            +GFY + HPL  YK +L++ M +  +        G  +R+A ++     K T++G  +  
Sbjct: 940  IGFYVTDHPLSDYKQMLQRFMPLHQFGGETQVQDGQFVRVAGIITDCTIKNTKRGDTMAV 999

Query: 1018 VTFSEPAKEYEANFFP 1033
            +T  + +  +    FP
Sbjct: 1000 LTLEDFSGRFPVIVFP 1015


>gi|15606309|ref|NP_213688.1| DNA polymerase III alpha subunit [Aquifex aeolicus VF5]
 gi|6014991|sp|O67125|DPO3A_AQUAE RecName: Full=DNA polymerase III subunit alpha
 gi|2983510|gb|AAC07087.1| DNA polymerase III alpha subunit [Aquifex aeolicus VF5]
          Length = 1161

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1076 (38%), Positives = 610/1076 (56%), Gaps = 90/1076 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL +H+ +SLL+GA+ ++ ++ K       A+ ++D  NLF + +F +   A GI
Sbjct: 2    SKDFVHLHLHTQFSLLDGAIKIDELVKKAKEYGYKAVGMSDHGNLFGSYKFYKALKAEGI 61

Query: 68   QPIIGCQLDIDMQ---DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +PIIG +         D    T++          ++L+    +G + L++L +  Y   +
Sbjct: 62   KPIIGMEAYFTTGSRFDRKTKTSEDNITDKYNHHLILIAKDDKGLKNLMKLSTLAY--KE 119

Query: 125  G-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            G     RI    L++ G EGLI LT    G        N  + AE+ +  FK +FGD LY
Sbjct: 120  GFYYKPRIDYELLEKYG-EGLIALTACLKGVPTYYASINEVKKAEEWVKKFKDIFGDDLY 178

Query: 184  VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ +   ++      ++++A  +++ L+AT ++ +L+ ED  AH VLMA+     + +
Sbjct: 179  LELQANNIPEQEVANRNLIEIAKKYDVKLIATQDAHYLNPEDRYAHTVLMALQMKKTIHE 238

Query: 243  ---------KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC--SF-ILQVHAP 290
                      +     P  Y+  + E    F    +AL NT+E+  +   SF I +    
Sbjct: 239  LSSGNFKCSNEDLHFAPPEYMWKKFE--GKFEGWEKALLNTLEVMEKTADSFEIFENSTY 296

Query: 291  ILPRFIEKECDDI--QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
            +LP++      D+   K  E  LR  A  GL  R+ +G   +    ++Y +RL++EL VI
Sbjct: 297  LLPKY------DVPPDKTLEEYLRELAYKGLRQRIERG---QAKDTKEYWERLEYELEVI 347

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F+GYFLIV DFI WAKKN+IPVGPGRGS  GS+ AYA+ ITD+DP++   LFERFL
Sbjct: 348  NKMGFAGYFLIVQDFINWAKKNDIPVGPGRGSAGGSLVAYAIGITDVDPIKHGFLFERFL 407

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DFCQD R++VI YV+NKYGH+ VAQIIT+  ++AK  LRDV RA+ +P
Sbjct: 408  NPERVSMPDIDVDFCQDNREKVIEYVRNKYGHDNVAQIITYNVMKAKQTLRDVARAMGLP 467

Query: 469  YSQVDRLCKLIPNDPAH------------PVS--LQA-------IADD-SRFREARLADP 506
            YS  D+L KLIP                 PV   LQ        I D+  +FR+     P
Sbjct: 468  YSTADKLAKLIPQGDVQGTWLSLEEMYKTPVEELLQKYGEHRTDIEDNVKKFRQICEESP 527

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
             + +L+E + KLEGL RH S HAAG+VI  +PLS+LVP+Y D   ++  TQ++M  +E+ 
Sbjct: 528  EIKQLVETALKLEGLTRHTSLHAAGVVIAPKPLSELVPLYYDKEGEV-ATQYDMVQLEEL 586

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K DFLGLKTLT L+   + + +R GV ++   +P DD + Y LL    T G+FQLES
Sbjct: 587  GLLKMDFLGLKTLTELKLMKELIKERHGVDINFLELPLDDPKVYKLLQEGKTTGVFQLES 646

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK 683
             GM++ L+ ++PD  +DI+A+++LYRPGP+ + +V  Y  RK+GKE +    P ++P+LK
Sbjct: 647  RGMKELLKKLKPDSFDDIVAVLALYRPGPLKSGLVDTYIKRKHGKEPVEYPFPELEPVLK 706

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET GVI+YQEQVM+++Q+LSG++  EAD LR+A+GKK  + M + K++FI GA + G  +
Sbjct: 707  ETYGVIVYQEQVMKMSQILSGFTPGEADTLRKAIGKKKADLMAQMKDKFIQGAVERGYPE 766

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                 ++E + KFA Y FNKSH+ AY  ISY TA++K HYP EF A  +T E  N  K  
Sbjct: 767  EKIRKLWEDIEKFASYSFNKSHSVAYGYISYWTAYVKAHYPAEFFAVKLTTE-KNDNKFL 825

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASAD-KP 861
               +DA+ F  +I+PP +N   V F + G+NRI + LA IKGVG  TA+ I+EA    K 
Sbjct: 826  NLIKDAKLFGFEILPPDINKSDVGFTIEGENRIRFGLARIKGVGEETAKIIVEARKKYKQ 885

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F  L DF ++  ++K+N++V+E+LV AGA D     R +LL  + N        EK    
Sbjct: 886  FKGLADFINKTKNRKINKKVVEALVKAGAFDFTKKKRKELLAKVAN-------SEKALMA 938

Query: 922  KHENIFAHEKGTFS--DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL--RK 977
               ++F   K      D + LEK               VLGFY SGHPLD Y+ +L  R 
Sbjct: 939  TQNSLFGAPKEEVEELDPLKLEK--------------EVLGFYISGHPLDNYEKLLKNRY 984

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              I+  EE     + +   L  ++   + KKT+ G  +      +     E   FP
Sbjct: 985  TPIEDLEE---WDKESEAVLTGVITELKVKKTKNGDYMAVFNLVDKTGLIECVVFP 1037


>gi|218235458|ref|YP_002369400.1| DNA polymerase III DnaE [Bacillus cereus B4264]
 gi|228960872|ref|ZP_04122505.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            pakistani str. T13001]
 gi|229147164|ref|ZP_04275522.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST24]
 gi|296505075|ref|YP_003666775.1| DNA polymerase III DnaE [Bacillus thuringiensis BMB171]
 gi|218163415|gb|ACK63407.1| DNA polymerase III, alpha subunit [Bacillus cereus B4264]
 gi|228636274|gb|EEK92746.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST24]
 gi|228798768|gb|EEM45748.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            pakistani str. T13001]
 gi|296326127|gb|ADH09055.1| DNA polymerase III DnaE [Bacillus thuringiensis BMB171]
          Length = 1108

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/1033 (36%), Positives = 611/1033 (59%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306
             D +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     E  DI   
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     GL  R  +    K  H +    RLD ELNVI+RM FS YFLIV DF+++
Sbjct: 284  ----LRRVCEEGLRKRYGE---PKEVHIK----RLDHELNVISRMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            +    +YA               A + G   D +   K+ V+   + F      E+  LG
Sbjct: 870  IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|229048311|ref|ZP_04193879.1| DNA polymerase III subunit alpha [Bacillus cereus AH676]
 gi|228723036|gb|EEL74413.1| DNA polymerase III subunit alpha [Bacillus cereus AH676]
          Length = 1108

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/1033 (36%), Positives = 611/1033 (59%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306
             D +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     E  DI   
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     GL  R  +    K  H +    RLD ELNVI+RM FS YFLIV DF+++
Sbjct: 284  ----LRRVCEEGLRKRYGE---PKEVHIK----RLDHELNVISRMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTTLLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            +    +YA               A + G   D +   K+ V+   + F      E+  LG
Sbjct: 870  IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|149919879|ref|ZP_01908355.1| DNA polymerase III, alpha subunit [Plesiocystis pacifica SIR-1]
 gi|149819326|gb|EDM78759.1| DNA polymerase III, alpha subunit [Plesiocystis pacifica SIR-1]
          Length = 1255

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/1116 (36%), Positives = 613/1116 (54%), Gaps = 111/1116 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA+ +N++  K+      ++A+TD  N+F A++F Q+A A G++PI
Sbjct: 15   FAHLHLHTQYSLLDGAIRMNDLCGKVKERGMKSVAMTDHGNMFGAVQFYQQAKAHGVKPI 74

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             GC+  I   D    T++          IVLL     GYQ L  LVS  +L +    + R
Sbjct: 75   FGCEAYIADGDAPAKTDRKNY------HIVLLAKNEVGYQNLQRLVSYGHL-EGFYYNPR 127

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L+E  +EGL+ L+    G I R         A +R+  +  +F    Y    +  
Sbjct: 128  IDRKTLRE-HSEGLVGLSACLGGHISRMITGGDMDGARERIREYADIFEPGSYFLELQPN 186

Query: 191  GYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            G +   +  + + QL    ++P+VATN+  ++++ +  AH+VLM +     ++ + R + 
Sbjct: 187  GMELQEKVNADLAQLGRDLDVPIVATNDCHYVNQSEAYAHEVLMCMGMGRTINDEKRLKH 246

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + ++K   +M   F   PEA+ N   IAR C+  L +  P LP F   E  D    E
Sbjct: 247  DCEEFFIKTPQQMWGYFERYPEAMHNAARIARMCNVELSLGKPELPDFKLPEGTD----E 302

Query: 308  ENELRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               LR  A  GL+ R+ +  A+ K      Y +RL+ EL +I  MKF GYFLIV DFI+ 
Sbjct: 303  VEYLRKVAREGLDQRIRELRALGKAPDTDVYFERLERELGIIINMKFPGYFLIVWDFIKE 362

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AKK  +PVGPGRGSGAGS+ AY++ ITDIDP+++ LLFERFLNP+R+SMPDFDIDFC DR
Sbjct: 363  AKKMGVPVGPGRGSGAGSLVAYSMRITDIDPMQYDLLFERFLNPERVSMPDFDIDFCMDR 422

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+YV + YG +RV QI TF SL+A+  LRDV R ++   ++ + L K++P  P   
Sbjct: 423  REEVIQYVTDHYGKKRVGQIATFHSLKARGLLRDVCRVMEKLPAEANELAKMVPEGPKVS 482

Query: 487  VSLQAIADDSRFR-------------EARL--------------ADPSVDRLLEISQKLE 519
            +SL  +AD    R             E +L              ADP V ++++I   LE
Sbjct: 483  LSL-CMADPKAIRAKMKKEPEKAGKLEGKLQIAEAATKLRLRCEADPGVKQIVDIGCSLE 541

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL RHA  HAAGIVIG+R L++ VP ++    D  VTQ+ M  +E+AGL+KFDFLGLKTL
Sbjct: 542  GLNRHAGMHAAGIVIGNRELTEHVPCFK--ADDKIVTQYTMNDVEQAGLVKFDFLGLKTL 599

Query: 580  TLLQKSLDFL-----------AQRGVK---VDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            T+++ ++D +            Q+G      D+  IP DD E Y +++   T G+FQLES
Sbjct: 600  TVIKHAVDQINGLEGPWRLDPTQQGTADKPFDIDTIPMDDAEVYAMISRGETTGVFQLES 659

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK 683
            +G ++ L+ ++PD  EDIIA V+LYRPGP++  +V  +   K+G+ KI   H L+  +L+
Sbjct: 660  TGFKKLLQKLKPDVFEDIIAAVALYRPGPLEGGMVDQFIECKHGRRKIEYPHELLADVLR 719

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA-SKNGIS 742
            ET GV +YQEQVM  AQ+L+G+SL  AD++RRAMGKK  +EM++Q+  F+ G  S N I 
Sbjct: 720  ETYGVFVYQEQVMLAAQILAGFSLGGADLMRRAMGKKKVKEMERQRALFVEGCESVNNID 779

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
               A  IF+L+ KFA YGFNKSH+AAY +I+YQTA++K HYP  F+   MT + D  E +
Sbjct: 780  AKKANEIFDLIDKFAGYGFNKSHSAAYGLITYQTAYLKHHYPEAFMCGLMTCDKDKSENV 839

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKV-------------------------------- 830
             KF  +AR  +I ++PP VN    DF V                                
Sbjct: 840  VKFIAEARSMDITVLPPDVNESASDFNVVVRDRPELSEEELKKKKQLARKSKKVRRRQAR 899

Query: 831  GDNR-------IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVL 882
             D+R       I + + A++ VG      I+ A  ++ PF ++ + C RVD K++N+R L
Sbjct: 900  EDSRPEGKLLAIRFGMGAVRNVGGNAVDSILAAREEEGPFKNIFELCRRVDLKRVNKRTL 959

Query: 883  ESLVFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
            E LV +GA D    G  R  ++ ++++  +  Q  +++R +    +F       SD++ +
Sbjct: 960  EGLVHSGAFDSVSEGQHRAGVVAAIESAVEQGQSSQRDRESGQGGLF---DAFSSDQVYV 1016

Query: 941  EKFSVENSSV---RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
            E++          R  NE+  LGFY +GHPLD Y+  + +       E    + G  + L
Sbjct: 1017 EEYPKVREWAPKQRLLNERDALGFYLTGHPLDRYQQDIDRHASVRIGELRKELAGQEVVL 1076

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              ++   +Q  T+ G  +G+    +     E   FP
Sbjct: 1077 GGVITEMRQVTTKAGKTMGFFQLEDQFGRVEVIVFP 1112


>gi|294792867|ref|ZP_06758014.1| DNA polymerase III, alpha subunit [Veillonella sp. 6_1_27]
 gi|294456766|gb|EFG25129.1| DNA polymerase III, alpha subunit [Veillonella sp. 6_1_27]
          Length = 1135

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/1015 (36%), Positives = 618/1015 (60%), Gaps = 39/1015 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +SLL+G   L +++ +     QPA+AITD  N+++A+ F ++  A G++PI
Sbjct: 4    FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY---LLDQGKQ 127
            IGC++ +  ++N     +G++    +  ++LL  T EGY+ L+++VS+     +L + + 
Sbjct: 64   IGCEVYV-TENNRFDRPEGRSR-ERLKHLILLAETMEGYRNLVKIVSKASTEGMLYRPRA 121

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
               +   +     ++G+I L+    G I +    ++ + A++ +  + + +G D  ++ +
Sbjct: 122  DRDLLRQY-----SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEI 176

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   +  + + ++++L+  + L +VA+N+  ++ +ED +A D+ + ++     ++ DR
Sbjct: 177  QNHGLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDR 236

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             +   D  YLK+  EM  +F  +P A+ENT++IA RC+         LP F      D+ 
Sbjct: 237  LKFPNDEFYLKSGDEMAELFGHIPGAIENTLKIAERCNVEFNFDEHHLPHF------DVP 290

Query: 305  KEEENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            + E ++   + V   E+ RL       G  +++ ++RLD+EL+VI  M F  YFLIV D+
Sbjct: 291  EGETSKTYLRKVCEREIPRLY------GETSEELQKRLDYELDVIGTMGFEDYFLIVWDY 344

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC
Sbjct: 345  VRYAREHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFC 404

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++R + I YV  KYG  RV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+ 
Sbjct: 405  YEKRGQAIEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNEL 464

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++L         +    +D +V  L +  +KLEG+ R++STHAAG+VI   PL   V
Sbjct: 465  G--ITLDKALQGKDLKALYESDSNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHV 522

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
            P+ ++   +  VTQ++   IE+ GL+K DFLGL+TLT++  +L  + A RG+ +DL  IP
Sbjct: 523  PV-QNANDEGFVTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIP 581

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD     +LT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +V  
Sbjct: 582  LDDAAACDILTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVAD 641

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + +R++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK
Sbjct: 642  FIDRRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKK 701

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             +  +  Q+E FI G+  NGI +++A  +F+LL  FA YGFNKSH+AAYA I+YQTA++K
Sbjct: 702  KESVLKAQRESFIQGSINNGIEESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLK 761

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HY  EF+AA+MT  M N++K+  +    ++ N++++ P +N     F V D+ I + L 
Sbjct: 762  AHYFPEFMAATMTSFMQNMQKLTYYINACKKHNVKVLGPDINYSERSFAVQDDSIRFGLG 821

Query: 841  AIKGVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK VG     R I E +    +  + DFC RVD++ +N+R+LESL+  GA+D F  +R 
Sbjct: 822  GIKNVGDNAIDRLIRERNEHGLYTDIVDFCKRVDNRVVNKRLLESLIRCGAMDGFQENRN 881

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
            QLL   ++ Q      +K+      N+F    E   F    T+E  S ++   + ++E+ 
Sbjct: 882  QLLHMYESAQAVGAKEQKDAAMGTMNLFGDMEEAVDFIPVPTVEDLSEDD---KLKDEKE 938

Query: 958  VLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
              GFY +GHPL  Y   L  +  +    E+     G  I    ++ +K  + T++
Sbjct: 939  YTGFYITGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKSDRMTKR 993


>gi|124023285|ref|YP_001017592.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT
            9303]
 gi|123963571|gb|ABM78327.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT
            9303]
          Length = 1171

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/1060 (37%), Positives = 603/1060 (56%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +    A I+P
Sbjct: 2    AFVPLHNHSDYSLLDGATQLPQMVKRAKELGMPALALTDHGVMYGAIELLKLCKNAEIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVP---SIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IIG ++ +       +    + P P       +V+L   A GY+ L++L S  +L     
Sbjct: 62   IIGNEMYV-------INGSIEDPQPKKERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRG 114

Query: 127  QSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            + +  R C+   L +  +EGLI+ T    G I +A       VA      ++++FG   Y
Sbjct: 115  RGIFARPCIDKELLKAYSEGLIVATACLGGEIPQAILRGRIDVARDVARWYQEVFGKDFY 174

Query: 184  VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H    DR    ++V +A    + L+ATN++ +LS+ D EAHD L+ V    ++S 
Sbjct: 175  LEVQDHGSPEDRIVNVEIVSIAKELGIELIATNDAHYLSKNDVEAHDALLCVLTGKLISD 234

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296
            + R R T   Y+K+  EM  +F+D      L EA+ NT  +A +      + +  +PRF 
Sbjct: 235  EKRLRYTGTEYIKSEQEMGRLFADHLEPDVLQEAIANTAAVAEKVEEYSILGSYQMPRFP 294

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSG 355
              E         + L   +  GL  RL    +A      D Y +RL +EL V+ +M F  
Sbjct: 295  IPE----GHSAVSYLHEVSEQGLRQRLK---LATADPIDDHYGERLTYELGVMEQMGFPT 347

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+V D+I++A++  IPVGPGRGS AGS+ AYAL IT+IDP++  LLFERFLNP+R SM
Sbjct: 348  YFLVVWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVQNGLLFERFLNPERKSM 407

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D DFC DRR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL
Sbjct: 408  PDIDTDFCIDRRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRL 467

Query: 476  CKLIPNDPAHPVSLQA-IADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             KLIP     P  L A I  DS    FRE    DP V + ++++ ++EG  +    HAAG
Sbjct: 468  AKLIPVVRGKPAKLAAMIGSDSPNAEFREKYQNDPVVTKWVDMAMRIEGTNKTFGVHAAG 527

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA- 590
            +VI   PL  LVP+ R+    + +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +  
Sbjct: 528  VVIAAEPLDNLVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEI 586

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              G ++D   +P +D ET+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LY
Sbjct: 587  SNGERIDPDQLPPEDPETFALLARGDLEGIFQLESSGMRQIVRDLRPSSLEDISSILALY 646

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+D  ++  + NRK+G+E I   H  ++P+LKET G+++YQEQ+M+IAQ L+GYSL 
Sbjct: 647  RPGPLDAGLIPKFINRKHGREAIDFAHAALEPILKETYGIMVYQEQIMKIAQDLAGYSLG 706

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            EAD+LRRAMGKK   EM K +  F+ GAS++G+ K IA  +F+ +  FA+Y FNKSH+ A
Sbjct: 707  EADLLRRAMGKKKVSEMQKHRSIFVEGASRSGVDKKIADELFDQMVLFAEYCFNKSHSTA 766

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y  ++YQTA++K HYPV ++A+ +T+     +K++++  +     I++MPP VN   +DF
Sbjct: 767  YGAVTYQTAYLKAHYPVAYMASLLTVNAGASDKVQRYISNCNAMGIEVMPPDVNASGIDF 826

Query: 829  KVGDNRIYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                +RI + L+A++ +G    R  I     D PF SL D C R+ S  LNRR LESL+ 
Sbjct: 827  TPAGDRILFGLSAVRNLGDGAIRQLIANRDGDGPFVSLADLCDRLPSNVLNRRGLESLIH 886

Query: 888  AGALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
             GALD      +R QL+  L+ +  +A    ++R +   N+F    G  +D+ T ++ S 
Sbjct: 887  CGALDAIDPESNRAQLIADLELLINWAASRARDRLSGQGNLFDLVAGA-ADEQTSDELST 945

Query: 946  ENSSV---------RFENEQRVLGFYFSGHPL-DVYKP--ILRKMGIKGYEESVATIRGN 993
               +          +   E+ ++GFY S HPL  +  P  +L  +G+   E+     +  
Sbjct: 946  APKAAPVPDYPPTEKLRLEKELVGFYLSDHPLKQLTAPAQLLAPIGLASLEDQPDKAK-- 1003

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + +  M+   +Q  TRKG R+  +   +     EA  FP
Sbjct: 1004 -VSVITMLTEMRQVTTRKGDRMAVLKIEDLTGGCEAVVFP 1042


>gi|313888087|ref|ZP_07821761.1| DNA polymerase III, alpha subunit [Peptoniphilus harei
            ACS-146-V-Sch2b]
 gi|312845777|gb|EFR33164.1| DNA polymerase III, alpha subunit [Peptoniphilus harei
            ACS-146-V-Sch2b]
          Length = 1141

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1046 (36%), Positives = 612/1046 (58%), Gaps = 49/1046 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +HS YSLL+G+  ++ +  ++      A+A+TD  N++ A+ F +    AG++P
Sbjct: 3    NFVHLHLHSEYSLLDGSTRISLLPQRVKDLGMDAVALTDHGNMYGAIAFYKACKDAGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ I  +D   MT + +T       ++LL    EG++ ++++VS  Y+ D      
Sbjct: 63   ILGCEVYISEKD---MTVKDRTN--KRYHLILLAENNEGFKNIMKIVSTGYV-DGYYYKP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L++  ++G+I  +    G + +A      + A+K  L ++ +FG+   ++ LQ 
Sbjct: 117  RVDKEVLKKY-SKGVIATSACLGGEVQKALLNRDKEAAKKAALEYRDIFGEGNFFLELQD 175

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ R   ++V L+   +LPL A+N+  +L +ED ++HDVL+ +     V+  DR +
Sbjct: 176  HGMPEQARVNRELVLLSEELDLPLTASNDVHYLMKEDSKSHDVLLCIQTGKTVNDTDRMK 235

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  YLK+  EM ++F + PEALENTV+IA RC+  ++ H   LP FI     D    
Sbjct: 236  FPSDEFYLKSPDEMAALFPENPEALENTVKIAERCNVEIKFHDLHLPEFI---VPDGYSH 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            EE  L+  A+ G+  R             + ++R +FE N I  M +  YFLIV DFI++
Sbjct: 293  EEY-LKKLALEGMIKRYENVT-------DEIKERFEFEFNTIKNMGYVDYFLIVWDFIRY 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+K+ I VGPGRGS AGS+ +Y L ITD+DPL F LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 345  ARKHEIQVGPGRGSAAGSMVSYCLGITDVDPLEFDLLFERFLNPERVSMPDIDIDFCYER 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI YV  KYG   VAQI+TFG++ A+ A+RDVGRAL M Y++VD + K +P      
Sbjct: 405  REEVIDYVNRKYGDSHVAQIVTFGTMAARNAIRDVGRALDMSYAKVDYIAKQVPQALNMT 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+     F+     +     L++++ KLEGL RH STHAAG+VI    L++ VP+ 
Sbjct: 465  IE-KALEVSETFKGIYDGEEDSRLLIDMALKLEGLPRHTSTHAAGVVISKDELTEYVPLT 523

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            R+ +  +  TQFNM  +E+ GL+K DFLGL+TLT+++ +++ + + +G  ++     ++D
Sbjct: 524  RNDK--IIATQFNMIELEELGLLKMDFLGLRTLTVIRDAINLIKENQGKTINFDNFNYND 581

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             E   +     TLG+FQ ESSGMR  L+ ++PD   D++A  +L+RPGP+  I  +   K
Sbjct: 582  PEVLKMFAKSETLGVFQFESSGMRAFLKELKPDEFSDLVAANALFRPGPMKQIPKFVGSK 641

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            + K  I  IHP ++P+LK T G I+YQEQVMQI Q + GYSL  AD++RRA+ KK  + M
Sbjct: 642  HDKSTISYIHPKLEPILKSTYGCIVYQEQVMQIVQQIGGYSLGRADIVRRAISKKKMKVM 701

Query: 726  DKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +++++ FI         GA  NG+ +  A  I++L+  FADY FNKSH+ AY+V++Y+TA
Sbjct: 702  EEERKNFIYGNKEEGVCGAIANGVDEKSANEIYDLIIDFADYAFNKSHSVAYSVVAYRTA 761

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K +YP EF+AA ++   ++++++  + ++ ++  I+I+PP++N    +F V DN+I +
Sbjct: 762  WLKYYYPREFMAAQISTYTNDIKQVSLYIEEIKRLGIEILPPNINYSYKNFTVEDNKIRF 821

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGALDCF 894
             L A+K VG      I+      P+ SL+DF  R+   D   LN+R +ESL+  GA+D F
Sbjct: 822  GLKAVKNVGDNLIDVIVRTRDKGPYKSLKDFVDRINALDKSALNKRAVESLIRCGAMDDF 881

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R Q L   + I   +    KN      ++F  E     D   L  F  ++   + + 
Sbjct: 882  RGNRAQYLAIYEGILSSSSNTAKNNVMGQFSLF-EEADLQEDLPRLRDFPQKD---KLDM 937

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMG-------IKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            E+ V+G Y SGHPLD Y+ ++ K          + Y E++  +R + +++  ++ SK+  
Sbjct: 938  EKEVIGMYISGHPLDPYRELIEKNSSINTNQIFEKYRENL--LRRSKVKVGGILKSKKTM 995

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+    + +    +     E   FP
Sbjct: 996  ITKTNKMMAFAALEDLFGTIELVIFP 1021


>gi|20808235|ref|NP_623406.1| DNA polymerase III DnaE [Thermoanaerobacter tengcongensis MB4]
 gi|20516832|gb|AAM25010.1| DNA polymerase III alpha subunit [Thermoanaerobacter tengcongensis
            MB4]
          Length = 1148

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/1067 (37%), Positives = 619/1067 (58%), Gaps = 80/1067 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+G+  + +++ K       AIAITD   ++  ++F ++A A GI+PI
Sbjct: 5    FVHLHVHTEYSLLDGSCRIKDLIAKTKELGMKAIAITDHGAMYGVIDFYKEAVAQGIKPI 64

Query: 71   IGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IGC++ +    MQD     +           +VLL     GY+ L+++V+   L +    
Sbjct: 65   IGCEIYVAPRRMQDREYGIDDENY------HLVLLAKDMTGYKNLMKIVTAASL-EGFYY 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              R+   +L+   +EGLI L+   +G +         + A++  L +  +FG    Y+ L
Sbjct: 118  KPRVDKEFLKN-HSEGLIALSACLAGEVPSLILRGDYEKAKEVALFYDSIFGRGNFYLEL 176

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++ +   ++V+++    +PLVATN+  +L ++D  AH+VL+ +     +  +DR
Sbjct: 177  QDHGILEQKKVNRELVRMSKETGIPLVATNDVHYLEKKDARAHEVLLCIQTGKTIEDEDR 236

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                 D  YLK+  EM  +F+   EA+ENT +IA  C+   + +   LP++   E  D  
Sbjct: 237  MLFPTDEFYLKSPEEMEELFACCKEAIENTEKIAEMCNIEFEFNKTKLPKYDLPEGVD-- 294

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  LRN    GL  R           +Q+   RL++EL+VI +M +  YFLIV DFI
Sbjct: 295  --SYEYLRNLCYEGLYKRYKS-------PSQEVIDRLEYELSVIKQMGYVDYFLIVWDFI 345

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++AK N I  GPGRGS AGS+ AY L IT++DP++++LLFERFLNP+R+SMPD D DFC 
Sbjct: 346  KFAKDNGIMTGPGRGSAAGSLVAYTLGITNVDPIKYNLLFERFLNPERVSMPDIDSDFCY 405

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL  PY++VD + K+IP +  
Sbjct: 406  ERRQEVIDYVVRKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDEIAKMIPFELG 465

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  +   +E    D  V +L++IS+ LEGL RHASTHAAG+VI   PL   VP
Sbjct: 466  MTID-RALELNPELKERYEKDERVKQLIDISKALEGLPRHASTHAAGVVISKEPLVNYVP 524

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            + ++   D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + + +G+ +DL  + +
Sbjct: 525  LQKN--DDSVVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGIIIDLDSLNY 582

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD + Y L++   T G+FQLES GMRQ +  ++P  +EDIIA +SLYRPGP+D I  Y  
Sbjct: 583  DDPKVYELISKGETEGVFQLESPGMRQFMTELKPKNLEDIIAGISLYRPGPMDQIPKYLA 642

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             +N  EKI   HP++ P+L+ T G ++YQEQVMQI + ++GYSL  AD++RRAM KK  +
Sbjct: 643  NRNNPEKIEYEHPILKPILEVTYGSLVYQEQVMQIVRDVAGYSLGRADLVRRAMAKKKMD 702

Query: 724  EMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             M+++++ FI             GA +NG+ +  A  +F+ + +FA+Y FNKSHAAAYAV
Sbjct: 703  VMEQERKNFIYGIVDEEGNVVVPGALRNGLDEETANRLFDQMLEFANYAFNKSHAAAYAV 762

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            I+YQTA++K ++PVEF+AA +   +DN++KI  + Q  ++  I+++PP +N     F V 
Sbjct: 763  IAYQTAYLKRYFPVEFMAALLNSFVDNLDKIAFYVQVCKKMGIKVLPPDINESDSYFTVV 822

Query: 832  DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             ++I + L+A+K VG      I+ E  A   F S+ DF  R+   +LN++ +ESL+ AGA
Sbjct: 823  GDKIRFGLSAVKNVGINVTEEIVREREARGKFKSVIDFFERMQDSQLNKKAIESLIKAGA 882

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
                G  R QLLQS D   K  + V+K +++  E            +I+L + S E+  +
Sbjct: 883  FASLGVKRSQLLQSYD---KLIESVKKAKSSAIEG-----------QISLFEVSEEHKEI 928

Query: 951  RF--------------ENEQRVLGFYFSGHPLDVYKPILRKMG--------IKGYEESVA 988
             F                E+  LG Y SGHPL+ Y   + K+         I   +E   
Sbjct: 929  DFRFPDVEEYPKNRILSMEKETLGLYISGHPLEEYLEDIPKITNVTTLDFKINPEDEMFT 988

Query: 989  TIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +   +N  + +A ++V+K+ K TR  + + +VT  +     E   FP
Sbjct: 989  SKLEDNQEVTIAGVIVAKKVKFTRNSNIMAFVTLEDMYGTVEVIVFP 1035


>gi|256846853|ref|ZP_05552308.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium sp.
            3_1_36A2]
 gi|256717819|gb|EEU31377.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium sp.
            3_1_36A2]
          Length = 1132

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/1026 (37%), Positives = 607/1026 (59%), Gaps = 67/1026 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSL EG  S+++ L K       ++A+TD  N+F A+EF QKA   GI+P
Sbjct: 3    NFVHLNLHTEYSLSEGVNSIDSFLVKAKELGMSSLAVTDYANMFCAVEFYQKAKKMGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L I  +D              + ++ LL     GY+ L++L S +Y  ++ ++ +
Sbjct: 63   IIGLELPISNRDE-----------QNIFTLTLLAKNYNGYKNLVKLASELYKKNENRE-L 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFG-DRLYVNLQ 187
            +I    L++  ++ LI+L+   +G I +A   +SS     +++  + ++F  +  Y+ +Q
Sbjct: 111  KINKEVLKKY-SQDLIVLSSSINGEIGKAILTDSSDEKINKIIDEYIEMFSKENFYLEIQ 169

Query: 188  RHRGYDRYRESQVVQ-----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                 +   E++++      LA  + L LVATNN  ++ ++ YE  D+++ +     V +
Sbjct: 170  A----NELPETKIINDKFYNLAKLNGLELVATNNVYYVDKDGYELQDIIICIQSGLKVKE 225

Query: 243  KDRPR-VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            ++R + ++ + YLK++ EM     +   +A+EN   IA  C+  +       P +     
Sbjct: 226  RNRKKAISKELYLKSKEEMQRFLGEKFEKAIENANHIADLCNVEISFGNLQFPYY----- 280

Query: 301  DDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYH---AQDYRQRLDFELNVIARMKFS 354
             ++  E          +G++  L       I K Y     +D   RL++EL+VI +M +S
Sbjct: 281  -EVPSE---------YSGMDEYLKTICHTNIKKLYKENLTKDILDRLEYELSVIIKMGYS 330

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYF++V DFI +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+S
Sbjct: 331  GYFIVVWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERIS 390

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD DID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+
Sbjct: 391  MPDIDIDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDK 450

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            L KLI   P   +  + + ++    +    D  + ++++++ ++E   RH STHAAGI+I
Sbjct: 451  LAKLIS--PFQALE-RTLKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGILI 507

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
                L + VP+Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + 
Sbjct: 508  TKEDLDRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKN 567

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            + VDL  IP DD + +H+L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPG
Sbjct: 568  IDVDLYKIPLDDKKVFHMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPG 627

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+ + +V  + NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD
Sbjct: 628  PLQSGMVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEAD 687

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK    M + +E+FI  A  NG ++  +  IFEL+ KFA YGFNKSH+ AYA+
Sbjct: 688  LLRRAMGKKNFAIMRENREKFIERAINNGYTEEKSEEIFELIDKFAGYGFNKSHSVAYAM 747

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISY T + K HYP  + AA MT E+     I  +  D ++  I++  P+VN+P   F+V 
Sbjct: 748  ISYWTGYFKVHYPAYYYAAVMTSEISETGDIAYYFNDTKEHGIRVYSPNVNSPSAYFEVK 807

Query: 832  DNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            +  I YSLAAIK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GA
Sbjct: 808  NEGITYSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGA 867

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFSVEN 947
            LD    +R +   S+D +  Y+    K    +  N+F     T  DK  L   E F+++ 
Sbjct: 868  LDEIKGNRKEKFLSIDKVLDYSSKASKTDEIQQMNLFGEAAKTI-DKFNLAISEDFTLDE 926

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIRGNNIRLAAMV 1001
               +   E+  LGFY S HPLD YK IL    IK        E+ V    G    L  ++
Sbjct: 927  ---KLNKEKEFLGFYLSSHPLDRYKDILITFSIKKLSEIDLEEKQVVKTFGTITNLKKII 983

Query: 1002 VSKQQK 1007
              K+++
Sbjct: 984  TKKEEQ 989


>gi|291285989|ref|YP_003502805.1| DNA polymerase III, alpha subunit [Denitrovibrio acetiphilus DSM
            12809]
 gi|290883149|gb|ADD66849.1| DNA polymerase III, alpha subunit [Denitrovibrio acetiphilus DSM
            12809]
          Length = 1179

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1050 (38%), Positives = 616/1050 (58%), Gaps = 37/1050 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAAD-QQPAIAITDTNNLFSALEFSQKAC 63
            +  S  FVHL +H+ YSLL+GA+ + +++ KI      P + I+D   +   ++F ++A 
Sbjct: 1    MNNSKDFVHLHLHTQYSLLDGAILVGDLMQKIKEKGMTPMVGISDHGTMHGIVDFYRQAR 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMT-NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
            A  I+PI+GC++ +        T  +G+        +VL     +G   L +LVS +   
Sbjct: 61   ANDIKPILGCEVYVAPDSRFNTTYERGQE---RNHHLVLQAVNNKGLSNLQKLVS-LAQF 116

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181
            +      R+    + +  +EGLI ++   +G I R    +    A      ++ +FG D 
Sbjct: 117  EGFHYKPRVDKEIMAQY-SEGLIAMSACLAGEIPRKIIRDQYDEAVAAAHEYRDIFGKDN 175

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ +Q +   ++   ++ +++++    +PLVATN+  +L++ D+ +H+VL+ +   + +
Sbjct: 176  FFLEIQENGIEEQLMVNRNIIKMSRDSGIPLVATNDCHYLNKGDHLSHEVLICIQTQSTI 235

Query: 241  SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +  +R  +  D  ++K   EM + F ++P+AL NTVEIA RC+  +      LP +   E
Sbjct: 236  NSPNRFEIHSDQLWVKTPEEMWAAFGEVPDALTNTVEIANRCNTSITFGELHLPEYEVPE 295

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               I     + L + A  GL  +LA+  I    H Q Y  R+  E +VI    F+GYFLI
Sbjct: 296  GYTIS----SYLEHLARKGLHEKLAK--IPSEKH-QIYYDRMQKEFDVIIGKNFAGYFLI 348

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DF+ +++   IPVGPGRGSGAGS+ AY+L ITD+DP+ F+LLFERFLNP+R SMPDFD
Sbjct: 349  VWDFMNYSRSVGIPVGPGRGSGAGSLVAYSLGITDLDPIYFNLLFERFLNPERSSMPDFD 408

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC   R++VI+YV+ KYG +RV+QIITFG L  ++ +RDVGR L++P   VD+L K I
Sbjct: 409  IDFCVKGREQVIKYVREKYGDDRVSQIITFGKLLGRSTVRDVGRVLEVPLPIVDKLAKAI 468

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P+DP   +  +A+  D   R+   A    + +L  + KLEGL R+   HAAGIVI D+PL
Sbjct: 469  PSDPGMTLR-KALKKDEDLRKVFQAAEQGELILNHAVKLEGLVRNTGMHAAGIVISDKPL 527

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
            ++ VP+ R   +++ + QF    +E  GL+KFDFLGL  LT++ +++  + + RG  +D+
Sbjct: 528  NEYVPLCRGQNNEV-IAQFEKDTLESVGLVKFDFLGLNNLTIIDEAIKQIKKNRGEDLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP D+ + Y LL+   T  +FQLESSGM+  L+ ++P+  EDIIALV+LYRPGP+++ 
Sbjct: 587  ASIPLDNKKVYELLSRGDTTAVFQLESSGMKNLLKKLRPEQFEDIIALVALYRPGPMESG 646

Query: 659  VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            ++  +  RK G+E+I  I P ++ +LKET+GV+IYQEQVMQIAQ++ GYSL  AD LRRA
Sbjct: 647  MLDSFVKRKYGEEEIDYIFPDLEEILKETRGVVIYQEQVMQIAQIIGGYSLGSADNLRRA 706

Query: 717  MGKKIKEEMDKQKERF-------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            MGKK   EM+KQK+ F       I GA   G    +A ++F+ LAKFA YGFNKSH+AAY
Sbjct: 707  MGKKKAAEMEKQKQFFLYGDGDTIPGAKARGYDMKMAEDLFDKLAKFAGYGFNKSHSAAY 766

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+ISYQTA++K  YPVE++AA ++ E+D  +KI  F ++ +   I ++PP++N   V+F+
Sbjct: 767  ALISYQTAYLKALYPVEYMAAILSCEIDKGDKIVTFTEECKNMGIDVLPPNINKSGVNFE 826

Query: 830  VGDNRIYYSLAAIKGVG-TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            +    I++ L AIK VG       + E   +  F ++ DFC RVD +  N+RVLESLV A
Sbjct: 827  IEGTAIHFGLGAIKNVGFNAIEAALQERDKNGEFKNIYDFCERVDLRACNKRVLESLVKA 886

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA DC G +R Q LQ ++   +  Q   K       +I A      SD+   E+F   + 
Sbjct: 887  GAFDCSGKNRRQNLQVIERALEEGQRKHKMAEQGIMSIEAFLVDEESDE--EEQFFFPDV 944

Query: 949  SVRFEN-----EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                EN     E+ VL FY S HPL +Y  IL+   I   E +     G+ +    +   
Sbjct: 945  EEMPENELLKMEKEVLDFYISNHPLAIYNNILKTFTIPIGEVANPDSEGDIVIGGLVKHV 1004

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K+    +KG ++ +    +   E E   FP
Sbjct: 1005 KRIVTKKKGEKMAFANVEDMDSEVEVVVFP 1034


>gi|291296502|ref|YP_003507900.1| DNA polymerase III subunit alpha [Meiothermus ruber DSM 1279]
 gi|290471461|gb|ADD28880.1| DNA polymerase III, alpha subunit [Meiothermus ruber DSM 1279]
          Length = 1257

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1093 (37%), Positives = 607/1093 (55%), Gaps = 81/1093 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            F HL  H+ +SLL+GA  L ++L   K  + ++P +A+TD  N+F A++F + A   G++
Sbjct: 22   FAHLHQHTQFSLLDGAARLKDLLKWVKQVSPEEPMLAMTDHGNMFGAVQFYKYATELGVK 81

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ 127
            PIIG +  +  +       QGK        + LL    EGYQ L  L SR YL    GK 
Sbjct: 82   PIIGYEAYVAAESRFD-RKQGKGLDGGYFHLTLLAQNMEGYQNLSRLASRAYLEGFYGKP 140

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              RI    L+E    G+I L+G     I +       + AEKRL  +  +FG +R ++ +
Sbjct: 141  --RIDREILRE-HNAGIIALSGCLGAEIPQFILQERFEDAEKRLQEYLAIFGPERYFIEI 197

Query: 187  QRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++++ ++V+ + A  + L LVATN+  ++ ++D EAH VL+AV         +R
Sbjct: 198  QNHGLAEQHKVNRVLKEFADKYGLGLVATNDGHYVKKDDAEAHAVLLAVQSKATWDDPNR 257

Query: 246  PRVTPDH-YLKNRSEMVSIFSD--------LPEALENTVEIARRCSFIL-----QVHAP- 290
             +   D  Y+K+  EM   F D        + E  +N+V I R C   L     Q   P 
Sbjct: 258  WKFPCDEFYVKSPQEMRQTFEDERNLWGSRMDELFDNSVNIGRMCEVELVPKKVQYRIPK 317

Query: 291  --------------------ILPRFIEKECDDIQKEEENELR------NKAVAGLEVRLA 324
                                +L R+ ++   ++ +E   +L       +  V  LE+   
Sbjct: 318  YPLPEGRTEVVYFRELTFNGLLKRYPDRVTPELYREFLRKLGRPVPHGDGEVLALELARI 377

Query: 325  QGAIAKGYHAQDYRQ-----------RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            +   A   H  + R+           R  +EL V+ RM F GY LIV+DFI WAK N I 
Sbjct: 378  EDLEATRAHLPELREGIQWDGWAILSRAIYELTVVERMGFPGYLLIVSDFINWAKNNGIS 437

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+  YA  IT+IDPL ++LLFERFLNP R+SMPD D DF   RR EVI Y
Sbjct: 438  VGPGRGSAAGSLVTYATRITNIDPLEYNLLFERFLNPARVSMPDIDTDFSDVRRGEVIEY 497

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAI 492
            V+ +YG E VAQI TFG+L +KAA++D  R   +P  + D L KLIP     P+ L +AI
Sbjct: 498  VRQRYGDEMVAQIGTFGTLASKAAIKDAARVFGLPVKKADELAKLIPVTFGKPMPLDKAI 557

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                  R     DP V R+LE++QKLEGL R +S HAAG+VI D PL   +P+ R   + 
Sbjct: 558  ETIPDLRAEMEKDPLVKRVLEVAQKLEGLSRQSSVHAAGVVISDVPLRDYIPLMRAGDTG 617

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHL 611
              VTQ++M  +E  G +K DFLGL+TL+ L +    + + +GV++D   +P DD +T+ L
Sbjct: 618  AKVTQYDMGSVEALGFLKMDFLGLRTLSFLDECKRIIKESKGVELDYDNLPIDDAKTFEL 677

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            L    T G+FQL+S+GM  A+ G++P  I+DIIAL +LYRPGP++NI  Y  R +G+E++
Sbjct: 678  LGRGETKGVFQLDSAGMTSAVRGLKPRRIQDIIALGALYRPGPMENIPTYIRRHHGREEV 737

Query: 672  V-----SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                  +    I P+L+ET G+ +YQEQ+MQIA  ++GYSL EAD+LRRAMGKK  EEM 
Sbjct: 738  SYPQFPNAEKFIRPILEETYGIPVYQEQIMQIATAVAGYSLGEADLLRRAMGKKKMEEMV 797

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            KQ+ +F  GA+KNGI    A  +F+LL  FA+YGFNKSHAAAYA+++YQTA++K H+PVE
Sbjct: 798  KQRAQFKEGAAKNGIPAEEADRLFDLLEAFANYGFNKSHAAAYAILTYQTAYVKAHFPVE 857

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F AA +T+E  + +K+ ++ + AR   ++++PP +N     F+  +  + + L+A+K VG
Sbjct: 858  FFAAVLTVERHDSDKVAEYIRAARTAGVEVLPPDINQSGFSFRALEKSVLFGLSAVKNVG 917

Query: 847  TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
             T    I+ E     P+ SL DF  R+D    N+RV+ESL+ AGA D FG  R  +L +L
Sbjct: 918  ETPTELILRERERGGPYKSLPDFLRRLDGTVANKRVVESLIKAGAFDAFG-PRGPMLAAL 976

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D++ K+AQ   +   +    +F       S +  +      ++  +   E+  LG Y +G
Sbjct: 977  DDLLKWAQAEREQAQSGMMGLFGE-----SLEPVIPAVPQLDAITQLRMEKEALGIYVTG 1031

Query: 966  HPLDVYKPILRKMG--IKGYEESVATIRGNNIR----LAAMVVSKQQKKTRKGSRIGWVT 1019
            HPL  Y+ +       I+   ++ A ++GN  R    LA MV    +K T+ G  +   T
Sbjct: 1032 HPLSRYQGLREAASCTIEELPQAFAELKGNRNRARLLLAGMVEGIVRKPTKSGGMLVRFT 1091

Query: 1020 FSEPAKEYEANFF 1032
             ++     E   F
Sbjct: 1092 LADETGAVEVVAF 1104


>gi|228923349|ref|ZP_04086637.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            huazhongensis BGSC 4BD1]
 gi|228836303|gb|EEM81656.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            huazhongensis BGSC 4BD1]
          Length = 1108

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1033 (36%), Positives = 611/1033 (59%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306
             D +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     E  DI   
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIKNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     GL  R        G   + + +RLD ELNVI+RM FS YFLIV DF+++
Sbjct: 284  ----LRRVCEEGLRKRY-------GAPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            +    +YA               A + G   D +   K+ V+   + F      E+  LG
Sbjct: 870  IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRNKKKVQ-RAIVYITSVRVIRTKKFQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|228967702|ref|ZP_04128721.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            sotto str. T04001]
 gi|228791994|gb|EEM39577.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            sotto str. T04001]
          Length = 1108

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1033 (36%), Positives = 612/1033 (59%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306
             D +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     E  DI   
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     GL  R        G   + + +RLD ELNVI+RM FS YFLIV DF+++
Sbjct: 284  ----LRRVCEEGLRKRY-------GAPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ ++LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYNLLFERFLNPERVTLPDIDIDFPDVR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEERKKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            +    +YA               A + G   D +   K+ V+   + F      E+  LG
Sbjct: 870  IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|294827603|ref|NP_710439.2| DNA polymerase III subunit alpha [Leptospira interrogans serovar Lai
            str. 56601]
 gi|293385447|gb|AAN47457.2| DNA polymerase III alpha subunit [Leptospira interrogans serovar Lai
            str. 56601]
          Length = 1136

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/1009 (38%), Positives = 591/1009 (58%), Gaps = 42/1009 (4%)

Query: 43   AIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            ++A+TD  N+F A+EF  +A   GI+PIIG +  +   +  + T   K        ++LL
Sbjct: 3    SVAMTDHGNMFGAVEFYNEAIKQGIKPIIGSEFYVS-PNRKQETEMVKIADGNAYHLILL 61

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
                EGY+ LI L S+ Y     K++ RI    L    +EGL+ LT   +G ++R     
Sbjct: 62   AKNEEGYKNLIRLSSKSYTEGFYKKA-RIDYDLLDRY-SEGLVCLTACLAGEVNRKILEG 119

Query: 163  ----SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNS 217
                S Q+A K    F+K   +  Y+ +Q H   ++     QV +      +PLV TN+S
Sbjct: 120  KIDESFQLAGKLNEIFRK---EDFYMEIQNHGIPEQMTVAKQVYEFGKKTGIPLVVTNDS 176

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
             FL + D EA D+L+ +     ++         + Y+KN  EM  IF ++PEA  NT+EI
Sbjct: 177  HFLKKNDQEAQDILLRIGMQKRITDPMEFGFNGEFYVKNGDEMAKIFPEIPEAFYNTLEI 236

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH--AQ 335
            + + +  LQ    +LP F   E  D            A + LE  + +G I + Y   + 
Sbjct: 237  SNKVNLKLQFGNYLLPEFEVPEGYD------------ADSYLEKLIWEG-IERKYPNLSP 283

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            + ++R+ FELN I  MKF+GYFLIV D+I +AK+N IPVGPGRGS AGS+ AYAL IT++
Sbjct: 284  EIKERVIFELNTIKNMKFAGYFLIVQDYINYAKRNGIPVGPGRGSAAGSIVAYALGITNV 343

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            +PL+ +LLFERFLNPDR  MPD D DFC +RR+EVI Y++ +YG E+V QIITF SL AK
Sbjct: 344  EPLQHNLLFERFLNPDRKDMPDIDTDFCVERREEVINYIRRRYGEEKVGQIITFNSLAAK 403

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
            AAL+DV R L +P+ + + + K  PN     +S +A++  S  +     D    ++  I+
Sbjct: 404  AALKDVARVLNLPFGEANEMTKAFPNKLGMSIS-EALSTSSELKNFSEKDDINHKIFAIA 462

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIK 570
            Q+LEG YR    HAAG+VI   PL ++VP+      + P     VTQ++   +E  GLIK
Sbjct: 463  QRLEGNYRQPGRHAAGVVISPYPLEEVVPLSTVAEKEKPGVRAIVTQYDKNNLESIGLIK 522

Query: 571  FDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             D LGLK LT L  ++  + Q RG++++L  I +DD  TY LL    TLGIFQLES+G+ 
Sbjct: 523  MDILGLKNLTTLDYAIKLIEQRRGIRINLDEISYDDANTYSLLRKANTLGIFQLESTGIT 582

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQG 687
              +   Q    ++I+AL++LYRPGP+   ++  Y +RK+GK+++   HP  +P+LKET G
Sbjct: 583  DLVAKSQVSNFDEIVALIALYRPGPMGEGMLDEYLDRKSGKKQVTYPHPSCEPILKETFG 642

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            V +YQEQVM I++++ G+S+ ++DVLR+AM KK  + MDK K +F+ GA K GI + +A 
Sbjct: 643  VPVYQEQVMSISRVVGGFSVGDSDVLRKAMAKKKADLMDKLKVQFVEGAVKQGIQEKVAK 702

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
            ++FE L +F  YGFNKSH+ AYA+I+YQTA++K +Y +E+L A +  +      I K+  
Sbjct: 703  DLFEQLERFGGYGFNKSHSVAYAIITYQTAYLKANYTIEYLTALLASDHGKTTDIVKYIN 762

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSL 865
            +AR+  IQI+ P V+     F V DN  I + L+A+KGVG T A  I++A      F +L
Sbjct: 763  NAREMGIQILNPDVSESQASFSVIDNTTIRFGLSAMKGVGETAANSIIQARTKVGSFRTL 822

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE- 924
            +DF   +D++ +N++V E+L+ AGALD FGY+R  L +S+D+I  +AQ  E+ R N+ + 
Sbjct: 823  QDFALNIDTRLINKKVFEALIQAGALDSFGYTRKCLFESVDSILTFAQK-EQERANEGQF 881

Query: 925  NIFAHEKGTFSDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            ++F +E+ +FS  + L K ++E     + + E+ + G Y SGHPLD Y+  L+ +     
Sbjct: 882  SLFGNEESSFS--LNLPKDALEWEIDEKLKREKAIAGLYLSGHPLDKYEKQLKSLKTIPI 939

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            E+      G  + +A ++ SK  K +++          +   E E   F
Sbjct: 940  EKFDDLKSGTKVEVAGVISSKNIKLSKRNEEFANFKLEDRTGEIECVAF 988


>gi|297545038|ref|YP_003677340.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
            subsp. mathranii str. A3]
 gi|296842813|gb|ADH61329.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
            subsp. mathranii str. A3]
          Length = 1145

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/1056 (37%), Positives = 619/1056 (58%), Gaps = 59/1056 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VHS YSLL+G+  + +++ K       AIAITD   ++  ++F ++A A GI+PI
Sbjct: 2    FAHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAHGIKPI 61

Query: 71   IGCQLDI---DMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IGC++ +    M+D    + N+          +VLL     GY+ L+++V+ M  ++   
Sbjct: 62   IGCEIYVAPRSMRDREYGIDNENY-------HLVLLAKDMVGYKNLMKIVT-MASIEGFY 113

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
               R+   +L+E  ++GLI L+   +G +         + A++  L +  +FG    Y+ 
Sbjct: 114  YKPRVDKEFLKE-HSKGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLE 172

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H   ++ +   ++++L+    +PLVATN+  +L ++D +AH+VL+ +     +  +D
Sbjct: 173  LQDHGILEQQKVNKELIRLSKETGIPLVATNDVHYLDKKDAKAHEVLLCIQTGKTIDDED 232

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R     D  YLK+  EM ++FS   EA+ENT +IA  C+   + +   LP++   E  D 
Sbjct: 233  RMSFPTDEFYLKSPEEMENLFSYCKEAIENTEKIASMCNVEFEFNKTKLPKYDLPEGVD- 291

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                   LRN    GL  R            ++  +RLD+EL+VI +M +  YFLIV DF
Sbjct: 292  ---SYEYLRNLCYEGLYKRYKNPN-------KEVIERLDYELSVIKQMGYVDYFLIVWDF 341

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++AK N I  GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC
Sbjct: 342  IKFAKDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFC 401

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL  PY++VD + K+IP + 
Sbjct: 402  YERRQEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDVIAKMIPFEL 461

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A++ +   +     D  V +L++IS+ LEGL RHASTHAAG+VI   PL   V
Sbjct: 462  GMTID-KALSLNPELKVRYENDERVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYV 520

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+ ++   D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + + +GV +D   + 
Sbjct: 521  PLQKN--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVTIDFDSME 578

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +DD + Y L++   T G+FQLESSGM+Q +  ++P  +EDIIA +SLYRPGP+D I  Y 
Sbjct: 579  YDDPKVYELISKGETEGVFQLESSGMKQFMTELKPKNLEDIIAGISLYRPGPMDQIPRYL 638

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              KN  E IV  HPL+ P+L  T G ++YQEQVMQI + ++GYSL  AD++RRAM KK  
Sbjct: 639  ANKNHPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRADLVRRAMAKKKM 698

Query: 723  EEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + M+++++ FI             GA +NG+ ++ A  +F+ +  FA+Y FNKSHAAAYA
Sbjct: 699  DVMEQERKNFIYGMVDDEGNVIVPGALRNGLDESTANKLFDEMLDFANYAFNKSHAAAYA 758

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VI+YQTA++K +YPVEF+AA +   +DN++KI  +    ++  I+++PP +N     F V
Sbjct: 759  VIAYQTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVHVCKKMGIKVLPPDINESDSYFTV 818

Query: 831  GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +++I + L+A+K VG      I+ E   +  F S+ DF  R+   +LN++ +ESL+ AG
Sbjct: 819  VEDKIRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAG 878

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVE 946
            A   FG  R QLL   D + +  +    N  N   ++F     + G   +   LE+F   
Sbjct: 879  AFSSFGVRRSQLLSVYDKLMENIKKNRNNNINGQISLFGEIEQKHGVEFEFPDLEEFP-- 936

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESV--ATIRGN-NIRL 997
              S     E+  LG Y SGHPL+ Y   + K      +  K  EE +    +R N  + +
Sbjct: 937  -KSRLLSMEKETLGLYISGHPLEEYVEDIPKITNATTLDFKVSEEEMFQPKLRDNQEVVI 995

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            A ++ +K+ K T+  + + +VT  +     E   FP
Sbjct: 996  AGVISTKKIKFTKSNNMMAFVTIEDLYGTVEVIVFP 1031


>gi|330839090|ref|YP_004413670.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
 gi|329746854|gb|AEC00211.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
          Length = 1131

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1033 (37%), Positives = 602/1033 (58%), Gaps = 32/1033 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+GA  +  ++ +       ++AITD   ++  ++F ++A   GI+PI
Sbjct: 6    FAHLHVHTCYSLLDGASRIPELIARTKELGMDSVAITDHGAMYGVIDFYKEAKKQGIRPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC+  +  +     T    T +     ++LL    EGY+ L++LVS +   +      R
Sbjct: 66   IGCEAYLAPESRFDRTEVRGTRYY---HLILLAENDEGYRSLVKLVS-LANTEGMYYKPR 121

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +    L++   +GLI L+   +G I +A      + AEK +  +  +FG +  ++ +Q H
Sbjct: 122  VDKDILRKY-HKGLICLSACVAGEIPQAILRGERERAEKLVEEYIDIFGRENFFLEIQDH 180

Query: 190  RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D     + V++LA    + LVATN+  ++ +ED EAHDVL+A+     V    R R 
Sbjct: 181  GIPDEKTAFAGVIELAEKFGVGLVATNDIHYVHKEDTEAHDVLLAIQTGKGVHDPTRMRY 240

Query: 249  TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ---VHAPILPRFIEKECDDIQ 304
               + Y+++  EM  +F D PEAL NT +IA RC    +   +H P  P   E   DD  
Sbjct: 241  AEGEFYMRSPEEMQELFHDHPEALANTQKIAERCKVDFEFGHLHLPNFP-LPEGMTDDAY 299

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  LR      L +R  +   A        R+RLD+EL++I RM +  YFLIV DFI
Sbjct: 300  ------LRQLCEENLSLRYEKITPA-------VRERLDYELSIIHRMGYDSYFLIVWDFI 346

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+   I VGPGRGS AGS+ AY L IT++DPL++ LLFERFLNP+R++MPD DIDFC 
Sbjct: 347  KYARGEGIAVGPGRGSAAGSIVAYLLGITNLDPLKYELLFERFLNPERVTMPDIDIDFCY 406

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EVI YV+ +YG + VAQIITFG++ AK A+RDVGRAL+M Y+ VDR+ K +P++  
Sbjct: 407  IRREEVIDYVKRRYGADHVAQIITFGTMAAKGAIRDVGRALEMTYASVDRVAKAVPSELG 466

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+AD   FR          RL++ ++ LEGL RH+STHAAG+VI   PL+  VP
Sbjct: 467  ITLD-RALADSQDFRSIYEESDETKRLIDFARDLEGLPRHSSTHAAGVVIARNPLTDYVP 525

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +   V     VT+++   +E+ GL+K DFLGL+TLT++  +L  + + RGV +D+  +P 
Sbjct: 526  V--QVSDGTLVTEYDKDHVEELGLLKMDFLGLRTLTVIADALKNIKKSRGVTIDIDTMPL 583

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            +D +T  +L    T  +FQ+ES+GM   ++ +QP   +D+I  V+LYRPGP+ + +V + 
Sbjct: 584  EDEKTAEMLCRGDTGAVFQMESAGMTNLVKDLQPKNFQDLIPTVALYRPGPLGSGMVTDF 643

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               ++GK+K+  +HPL++P+LKET GV++YQEQVMQ+ Q+L+ ++L +AD+LRRAMGKK 
Sbjct: 644  IAGRHGKKKVTYLHPLLEPILKETFGVVLYQEQVMQVVQVLANFTLGQADILRRAMGKKK 703

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E +  Q+E ++ G  +NGI   +A  IF+LL  FADYGFNKSH+AAYA++++QTA++K 
Sbjct: 704  HEVLMSQRETYMKGTRENGIDDALAEKIFDLLTHFADYGFNKSHSAAYALVAWQTAYLKA 763

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP EF+AA +T  MD  +K+  + +  R+  I+I+PP VN    +F V    I + LAA
Sbjct: 764  HYPQEFMAAMLTSIMDTNDKVGVYIELCRRMGIKILPPDVNASEANFSVDGAAIRFGLAA 823

Query: 842  IKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            ++ VG    + +     +   F SL DFC+RVD +  N+RVLESL+  GA D  G  R Q
Sbjct: 824  VRNVGEAAIKSLAAVREEGGAFTSLLDFCTRVDMRTANKRVLESLIKCGAFDSLGAHRSQ 883

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL  L+ +   A     +  +    +F       ++ + L      +S  R   E+   G
Sbjct: 884  LLAVLERVIDVAARKHADAASGQIGLFGEAAMQEAEDVALPDIDEADSVQRLAWEKENTG 943

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            F+ +GHPLD ++  ++ +   G            +R+  ++ S ++  T+KG  + ++  
Sbjct: 944  FFITGHPLDRHEKKIKNLVPIGDILDGKKKERQLVRIGGLISSAKRIATKKGDTMCFLEL 1003

Query: 1021 SEPAKEYEANFFP 1033
             +     E   FP
Sbjct: 1004 EDYTHSVEVVVFP 1016


>gi|260887140|ref|ZP_05898403.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
 gi|260863202|gb|EEX77702.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
          Length = 1137

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1033 (37%), Positives = 602/1033 (58%), Gaps = 32/1033 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+GA  +  ++ +       ++AITD   ++  ++F ++A   GI+PI
Sbjct: 12   FAHLHVHTCYSLLDGASRIPELIARTKELGMDSVAITDHGAMYGVIDFYKEAKKQGIRPI 71

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC+  +  +     T    T +     ++LL    EGY+ L++LVS +   +      R
Sbjct: 72   IGCEAYLAPESRFDRTEVRGTRYY---HLILLAENDEGYRSLVKLVS-LANTEGMYYKPR 127

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +    L++   +GLI L+   +G I +A      + AEK +  +  +FG +  ++ +Q H
Sbjct: 128  VDKDILRKY-HKGLICLSACVAGEIPQAILRGERERAEKLVEEYIDIFGRENFFLEIQDH 186

Query: 190  RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D     + V++LA    + LVATN+  ++ +ED EAHDVL+A+     V    R R 
Sbjct: 187  GIPDEKTAFAGVIELAEKFGVGLVATNDIHYVHKEDTEAHDVLLAIQTGKGVHDPTRMRY 246

Query: 249  TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ---VHAPILPRFIEKECDDIQ 304
               + Y+++  EM  +F D PEAL NT +IA RC    +   +H P  P   E   DD  
Sbjct: 247  AEGEFYMRSPEEMQELFHDHPEALANTQKIAERCKVDFEFGHLHLPNFP-LPEGMTDDAY 305

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  LR      L +R  +   A        R+RLD+EL++I RM +  YFLIV DFI
Sbjct: 306  ------LRQLCEENLSLRYEKITPA-------VRERLDYELSIIHRMGYDSYFLIVWDFI 352

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+   I VGPGRGS AGS+ AY L IT++DPL++ LLFERFLNP+R++MPD DIDFC 
Sbjct: 353  KYARGEGIAVGPGRGSAAGSIVAYLLGITNLDPLKYELLFERFLNPERVTMPDIDIDFCY 412

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EVI YV+ +YG + VAQIITFG++ AK A+RDVGRAL+M Y+ VDR+ K +P++  
Sbjct: 413  IRREEVIDYVKRRYGADHVAQIITFGTMAAKGAIRDVGRALEMTYASVDRVAKAVPSELG 472

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+AD   FR          RL++ ++ LEGL RH+STHAAG+VI   PL+  VP
Sbjct: 473  ITLD-RALADSQDFRSIYEESDETKRLIDFARDLEGLPRHSSTHAAGVVIARNPLTDYVP 531

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +   V     VT+++   +E+ GL+K DFLGL+TLT++  +L  + + RGV +D+  +P 
Sbjct: 532  V--QVSDGTLVTEYDKDHVEELGLLKMDFLGLRTLTVIADALKNIKKSRGVTIDIDTMPL 589

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            +D +T  +L    T  +FQ+ES+GM   ++ +QP   +D+I  V+LYRPGP+ + +V + 
Sbjct: 590  EDEKTAEMLCRGDTGAVFQMESAGMTNLVKDLQPKNFQDLIPTVALYRPGPLGSGMVTDF 649

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               ++GK+K+  +HPL++P+LKET GV++YQEQVMQ+ Q+L+ ++L +AD+LRRAMGKK 
Sbjct: 650  IAGRHGKKKVTYLHPLLEPILKETFGVVLYQEQVMQVVQVLANFTLGQADILRRAMGKKK 709

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E +  Q+E ++ G  +NGI   +A  IF+LL  FADYGFNKSH+AAYA++++QTA++K 
Sbjct: 710  HEVLMSQRETYMKGTRENGIDDALAEKIFDLLTHFADYGFNKSHSAAYALVAWQTAYLKA 769

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP EF+AA +T  MD  +K+  + +  R+  I+I+PP VN    +F V    I + LAA
Sbjct: 770  HYPQEFMAAMLTSIMDTNDKVGVYIELCRRMGIKILPPDVNASEANFSVDGAAIRFGLAA 829

Query: 842  IKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            ++ VG    + +     +   F SL DFC+RVD +  N+RVLESL+  GA D  G  R Q
Sbjct: 830  VRNVGEAAIKSLAAVREEGGAFTSLLDFCTRVDMRTANKRVLESLIKCGAFDSLGAHRSQ 889

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL  L+ +   A     +  +    +F       ++ + L      +S  R   E+   G
Sbjct: 890  LLAVLERVIDVAARKHADAASGQIGLFGEAAMQEAEDVALPDIDEADSVQRLAWEKENTG 949

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            F+ +GHPLD ++  ++ +   G            +R+  ++ S ++  T+KG  + ++  
Sbjct: 950  FFITGHPLDRHEKKIKNLVPIGDILDGKKKERQLVRIGGLISSAKRIATKKGDTMCFLEL 1009

Query: 1021 SEPAKEYEANFFP 1033
             +     E   FP
Sbjct: 1010 EDYTHSVEVVVFP 1022


>gi|289578818|ref|YP_003477445.1| DNA polymerase III subunit alpha [Thermoanaerobacter italicus Ab9]
 gi|289528531|gb|ADD02883.1| DNA polymerase III, alpha subunit [Thermoanaerobacter italicus Ab9]
          Length = 1145

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/1056 (37%), Positives = 619/1056 (58%), Gaps = 59/1056 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VHS YSLL+G+  + +++ K       AIAITD   ++  ++F ++A A GI+PI
Sbjct: 2    FAHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAHGIKPI 61

Query: 71   IGCQLDI---DMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IGC++ +    M+D    + N+          +VLL     GY+ L+++V+ M  ++   
Sbjct: 62   IGCEIYVAPRSMRDREYGIDNENY-------HLVLLAKDMVGYKNLMKIVT-MASIEGFY 113

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
               R+   +L+E  ++GLI L+   +G +         + A++  L +  +FG    Y+ 
Sbjct: 114  YKPRVDKEFLKE-HSKGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLE 172

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H   ++ +   ++++L+    +PLVATN+  +L ++D +AH+VL+ +     +  +D
Sbjct: 173  LQDHGILEQQKVNKELIRLSKETGIPLVATNDVHYLDKKDAKAHEVLLCIQTGKTIDDED 232

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R     D  YLK+  EM ++FS   EA+ENT +IA  C+   + +   LP++   E  D 
Sbjct: 233  RMSFPTDEFYLKSPEEMENLFSYCKEAIENTEKIASMCNVEFEFNKTKLPKYDLPEGVD- 291

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                   LRN    GL  R            ++  +RLD+EL+VI +M +  YFLIV DF
Sbjct: 292  ---SYEYLRNLCYEGLYKRYKNPN-------KEVIERLDYELSVIKQMGYVDYFLIVWDF 341

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++AK N I  GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC
Sbjct: 342  IKFAKDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFC 401

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL  PY++VD + K+IP + 
Sbjct: 402  YERRQEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDVIAKMIPFEL 461

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A++ +   +     D  V +L++IS+ LEGL RHASTHAAG+VI   PL   V
Sbjct: 462  GMTID-KALSLNPELKVRYENDERVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYV 520

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+ ++   D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + + +GV +D   + 
Sbjct: 521  PLQKN--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVTIDFDSME 578

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +DD + Y L++   T G+FQLESSGM+Q +  ++P  +EDIIA +SLYRPGP+D I  Y 
Sbjct: 579  YDDPKVYELISKGETEGVFQLESSGMKQFMTELKPKNLEDIIAGISLYRPGPMDQIPRYL 638

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              KN  E IV  HPL+ P+L  T G ++YQEQVMQI + ++GYSL  AD++RRAM KK  
Sbjct: 639  ANKNHPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRADLVRRAMAKKKM 698

Query: 723  EEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + M+++++ FI             GA +NG+ ++ A  +F+ +  FA+Y FNKSHAAAYA
Sbjct: 699  DVMEQERKNFIYGMVDDEGNVIVPGALRNGLDESTANKLFDEMLDFANYAFNKSHAAAYA 758

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VI+YQTA++K +YPVEF+AA +   +DN++KI  +    ++  I+++PP +N     F V
Sbjct: 759  VIAYQTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVHVCKKMGIKVLPPDINESDSYFTV 818

Query: 831  GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +++I + L+A+K VG      I+ E   +  F S+ DF  R+   +LN++ +ESL+ AG
Sbjct: 819  VEDKIRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAG 878

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVE 946
            A   FG  R QLL   D + +  +    N  N   ++F     + G   +   LE+F   
Sbjct: 879  AFSSFGVRRSQLLSVYDKLMENIKKNRNNNINGQISLFGEIEQKHGVEFEFPDLEEFP-- 936

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESV--ATIRGN-NIRL 997
              S     E+  LG Y SGHPL+ Y   + K      +  K  EE +    +R N  + +
Sbjct: 937  -KSRLLSMEKETLGLYISGHPLEEYVEDIPKITNATTLDFKVSEEEMFQPKLRDNQEVVI 995

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            A ++ +K+ K T+  + + +VT  +     E   FP
Sbjct: 996  AGVISTKKIKFTKSNNMMAFVTIEDLYGTVEVIVFP 1031


>gi|51891797|ref|YP_074488.1| DNA polymerase III DnaE [Symbiobacterium thermophilum IAM 14863]
 gi|51855486|dbj|BAD39644.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
            14863]
          Length = 1252

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/1053 (37%), Positives = 590/1053 (56%), Gaps = 69/1053 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL +H+ YSLL+GA  +  +  + A     A+A+TD   LF  L F +     G++
Sbjct: 29   PEFVHLHLHTEYSLLDGANRIEPLARRAAELGMRAMAMTDHGVLFGVLPFYKAMRNHGVK 88

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC+L +    +  + + G+ P+     + +L     GY+ L++LVS  Y  +     
Sbjct: 89   PIIGCELYV-APGSRHVKSGGEKPY----HLTVLAENYTGYKNLVKLVSAGYT-EGFYYK 142

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             R+ L  L     EGLI+L+G  +G + + F     + A + +  ++++FG D  ++ LQ
Sbjct: 143  PRVDLELLNTY-REGLIVLSGCLAGEVAQKFLAGQPEEARRAIGRYREIFGPDHYFLELQ 201

Query: 188  -----RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                   +G +R+   Q         LP+VATN++ +L  +D    DVL+ +  +  +  
Sbjct: 202  DLGLPEQQGLNRFLLEQ--------GLPVVATNDAHYLRPQDARTQDVLICIGTNKTIDD 253

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPIL------ 292
             +R R+ T + Y+K+  EM   F  +P ALEN++ IA RC+  L   Q+H P        
Sbjct: 254  PNRMRMGTSELYVKSAEEMYWRFGHVPGALENSLAIAERCNVELPLGQIHLPHYALPPGY 313

Query: 293  --PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
              P ++ K C         E       G   R  +GA+          +RL+ ELNVI  
Sbjct: 314  DAPGYLRKLC--------YERIGPRYGG---RPPEGAM----------ERLEHELNVIIS 352

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F+GYFLIV DF+++A+   IPVGPGRGSGA S+ AY L ITD+DPLR+ LLFERFLNP
Sbjct: 353  MGFAGYFLIVWDFVEFARSRGIPVGPGRGSGASSLVAYVLGITDVDPLRYGLLFERFLNP 412

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+ MPDFDIDFC +RR EVI YV NKYG E VAQ+ITF ++ A+AA+RDVGRAL M Y 
Sbjct: 413  ERVDMPDFDIDFCYERRGEVIEYVHNKYGAECVAQVITFNTMAARAAVRDVGRALGMSYG 472

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            +VDR+ KL+P   +   +L+   +     E R     +  L++ ++ +EG+ R+ S HAA
Sbjct: 473  EVDRVAKLLPWGQSLDAALEKTEELRTLYEER---EEIRTLIDTARAVEGMPRNPSVHAA 529

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VI   PL + VP+Y+ +  D  VTQF+M  +++ GL+K DFLGL+TLT++  ++ F+ 
Sbjct: 530  GVVITADPLVEHVPLYK-MGDDSIVTQFDMDQLKEIGLLKMDFLGLRTLTVIDHAVKFVR 588

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            Q     D+  IP DD ETY ++    TLG+FQ+E+  +   L  M+P   EDIIA +SL 
Sbjct: 589  QYQPDFDIERIPMDDPETYAMIARGETLGLFQIEAGWVADVLRQMKPTRFEDIIATISLC 648

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+++I  Y   K     +  +HP ++P+L ET GV++YQEQ++QIA LL+G SL +A
Sbjct: 649  RPGPMEHIPDYIAGKQNPAGVKYLHPDLEPILSETYGVMVYQEQIIQIAHLLAGLSLGQA 708

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRA+ KK +E+M+K    F+    + G S  +A  +++ + +FA+YGFNK HA  YA
Sbjct: 709  DLLRRAIAKKKREDMEKYGRLFMEALEQRGYSHEVATALYDQMIRFANYGFNKCHATPYA 768

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++YQTA++K H+PV F+AA M   M    K+  + ++ R+  IQ++PP VNT    F  
Sbjct: 769  KVAYQTAYLKRHHPVAFMAALMNSVMGQEAKLALYIEECRRLGIQVLPPDVNTSFARFVP 828

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                I + L A+K +G      I+ A  +  PF SL D C RVD + LNRR LESL+ AG
Sbjct: 829  DGRTIRFGLGAVKNIGWNAVDAIVAAREEGGPFTSLRDLCERVDLRPLNRRALESLIMAG 888

Query: 890  ALDCFG------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---AHEKGTFSDKITL 940
            A D           R Q+L++LD I   AQ ++++R     ++F       GT  ++  L
Sbjct: 889  AFDRVAPPGGRPARRSQMLEALDKILDDAQKLQRHRQAGQISLFDLGVAGPGTAGEE-PL 947

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                          E+ VLGFY SGHPL  Y+  L   G            G  + +  M
Sbjct: 948  PDIPEFPPQRLLAMEKEVLGFYVSGHPLRQYQAALAAHGCLPVAALPEQRDGARVAVGGM 1007

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V   +Q  TR G+ + ++T  +   + E   FP
Sbjct: 1008 VAGLKQVTTRSGANMAFLTLEDQTGQVEVVVFP 1040


>gi|260439212|ref|ZP_05793028.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
 gi|292808227|gb|EFF67432.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
          Length = 1155

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/1060 (37%), Positives = 602/1060 (56%), Gaps = 66/1060 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +  I  +       ++AITD   ++  ++F + A   GI+P
Sbjct: 2    SFTHLHVHTEYSLLDGSGKIEEITARAKELGMDSLAITDHGVMYGVIDFYRAARNVGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSI--------VLLVSTAEGYQRLIELVSRMYL 121
            I+GC++ +             + F   P I        +LL     GY  L+++VS+ ++
Sbjct: 62   ILGCEVYV----------APGSRFEKEPGISDDRYYHLILLAENNTGYANLMKIVSKGFV 111

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD- 180
             D      R+    L+E  +EG+I L+   +G + +    N  + A K  L ++ +FG  
Sbjct: 112  -DGFYYKPRVDYEVLEEY-SEGIICLSACLAGEVQKLLARNLYEEACKAALKYEAIFGKG 169

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              ++ LQ H     +     +V+++    + LVATN+  +  E+D EAHD+L+ +     
Sbjct: 170  NYFLELQDHGIPTQKLVNRLLVRMSRELNIELVATNDVHYTYEDDAEAHDILLCIQTGKK 229

Query: 240  VSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            V+ +DR R     +YLK+  EM  +FS  P+AL+NT +IA+RC+  ++     LP++   
Sbjct: 230  VNDEDRMRYEGGQYYLKSEEEMRELFSYAPQALDNTHKIAKRCNVEIEFGVTKLPKY--- 286

Query: 299  ECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
               D+ +    E+ L +  + GL  R        G  A +  +RLD+EL+VI +M +  Y
Sbjct: 287  ---DVPEGFTSESYLEHLCMEGLVKRY-------GERAAELEERLDYELSVIKKMGYVDY 336

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV DFI +AK N I VGPGRGS AGS+ AY L ITDIDP++++L+FERFLNP+R+SMP
Sbjct: 337  FLIVWDFINYAKSNGIAVGPGRGSAAGSIVAYCLEITDIDPIKYNLIFERFLNPERVSMP 396

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D DIDFC +RR EVI YV  KYG +RV QI+TFG+L AK  ++DVGR L MPYS  D L 
Sbjct: 397  DIDIDFCYERRPEVIDYVMKKYGKDRVVQIVTFGTLAAKGVIKDVGRVLDMPYSVTDSLS 456

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            K+IPN+    +  +A+  ++ FR     +P V  L++I ++LEGL RH S HAAG+VIG 
Sbjct: 457  KMIPNEIGMTLD-KALNANNEFRTRYETEPEVKYLIDICKRLEGLPRHTSMHAAGVVIGS 515

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
            RPL + VP+ R        TQF M  IE+ GL+K DFLGL+TLT++Q +   + +RG V 
Sbjct: 516  RPLDEFVPLSR-ASDGTITTQFTMTTIEELGLLKMDFLGLRTLTVIQDAERLINKRGDVS 574

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             D+S I ++D     ++    T G+FQLES+GM+  ++ ++PD IED+IA +SLYRPGP+
Sbjct: 575  FDISKIDYNDRNVLEMIGQGKTEGVFQLESTGMKNFMKELKPDGIEDLIAGISLYRPGPM 634

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  Y   KN K  I      ++P+LKET G I+YQEQVMQI + L+GY+L  +D++RR
Sbjct: 635  DFIPQYIAGKNDKTSITYACKELEPILKETYGCIVYQEQVMQIVRDLAGYTLGRSDLVRR 694

Query: 716  AMGKKIKEEMDKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            AM KK +  M+K++  FI        +G    GI +++A +I++ +  FA Y FNKSHAA
Sbjct: 695  AMSKKKQAVMEKERHNFIYGNEEENVAGCIAKGIDESVASHIYDTMMDFAKYAFNKSHAA 754

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
             YA ++++TA++K +YPVEF+AA MT  +DN  K+ ++    R   I+I+PP +N     
Sbjct: 755  CYAFVAFRTAYLKYYYPVEFMAALMTSVLDNTTKVAQYIVTCRNMGIEILPPDINEGEGT 814

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F    D+ I Y L+AIK +G      I+E  A+   F  ++DF SR+  K++N+R +ES 
Sbjct: 815  FTAASDSSIRYGLSAIKSLGRPVIEAIVEERANGGRFKDIKDFISRLSGKEVNKRTVESF 874

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLE 941
            + +GA D FG +R Q++    +I        K   +   ++F      EK    D+IT+ 
Sbjct: 875  IKSGAFDSFGLTRKQMMLVYGDIMDKVSSERKTEISGQMSLFDMFAPDEK---PDEITIP 931

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG-------IKGYEESVATIRGNN 994
                   S     E+ VLG Y SGHPLD Y+ +L K         I   E  +  +  + 
Sbjct: 932  DVGEYTKSELLAMEKEVLGIYASGHPLDEYEGLLNKNVTCTTADFIPDDETGMPKVNDDE 991

Query: 995  -IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + +  M+     K TR+G  + ++   +     E   FP
Sbjct: 992  RVIVGGMIAECSVKNTRQGQNMAFLKLEDRVGTVEVIVFP 1031


>gi|86153288|ref|ZP_01071492.1| DNA polymerase III, alpha subunit subfamily, putative
           [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|121613428|ref|YP_001000414.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85843014|gb|EAQ60225.1| DNA polymerase III, alpha subunit subfamily, putative
           [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|87249433|gb|EAQ72393.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 1200

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1001 (39%), Positives = 591/1001 (59%), Gaps = 55/1001 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4   FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  +   D L      +  F     + L      GYQ L+ L S+ Y+  +G     
Sbjct: 64  IGMEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180
                L E  +EGLI  +    G +        +R   F +   + A++  L +KK+F D
Sbjct: 117 RINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y  + RH  G  R  +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
           ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLDLNLGNPTPPNFKFT 296

Query: 296 --IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDFE 344
               K+ + I  EE  E    N  +        GLE RL    I +  H ++Y+QRL+ E
Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLK--FIDESKH-EEYKQRLEVE 353

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523
             M     D L KL+P +    ++L A  + + + +E     P    + E ++ LEGL R
Sbjct: 474 CDMSIQDADELAKLVPEEL--KITLDAAYEKEPKIKEFIDRHPKGPEVWEYARALEGLNR 531

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581
           +A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT+
Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591

Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           +  ++  + +R  K +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  
Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
           EDIIA+++LYRPGP+++ ++  + +RK+G + I      ++ +L+ T GVI+YQEQVMQI
Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA 
Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAG 771

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++P
Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831

Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
           PS+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D 
Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T 
Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTS 951

Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             ++      E+F V     +   E+ +LG Y SGHPLD +
Sbjct: 952 GVQVNFTPKNEEFEVME---KLGYEKEILGIYVSGHPLDRF 989


>gi|224373354|ref|YP_002607726.1| DNA polymerase III subunit alpha [Nautilia profundicola AmH]
 gi|223588342|gb|ACM92078.1| DNA polymerase III alpha subunit [Nautilia profundicola AmH]
          Length = 1132

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/1042 (37%), Positives = 601/1042 (57%), Gaps = 66/1042 (6%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
              +HS YSLL   + + ++  K       A+AIT+ +N+FSA+EF +   A  I+PIIG 
Sbjct: 4    FHIHSDYSLLHSTIRIKDLTKKAKEYGFNALAITELDNMFSAIEFYESCRANEIKPIIGS 63

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N             +  ++L+     GY  L+ L S  YL +       +  
Sbjct: 64   DVSVIRDGN-------------IHRLILIAKNKTGYDNLMYLSSISYLYNMRGDKPYLPF 110

Query: 134  SWLQEIGTEGLIMLTGGSSGPI---DRAF---FFNSSQVAE--------KRLLTFKKLFG 179
              + +   EGL  +      PI   +  F    FN + + +        K +L   +   
Sbjct: 111  EEIVK-NKEGLCFIL-----PILESETGFHLNIFNENNILKGAAGYEKAKEILEIYRQNL 164

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            + +Y+ + R    +R  E  +++L+     PL+A++N  FL++ DY   D L  + ++  
Sbjct: 165  NEVYLEITRDSKEERLIEDDLIKLSNETGTPLLASSNIFFLNKLDYIYKDALECIENNKQ 224

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                 R     ++Y +++ E   IF DLPEA+ENT ++A   +  + +  P  P F  K 
Sbjct: 225  FDDLHRRPKVKENYFRSKEEFEEIFKDLPEAVENTDKLAESINLEIPLGNPTPPTF--KF 282

Query: 300  CDDIQKEEENELRN-------KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
              D   EE  ++ N       K   GLE RL    I +  H ++YR+RLD+E+++I RMK
Sbjct: 283  TKDYAAEEGLDIDNDVEYFEYKCKEGLEERLKH--IPENLH-EEYRKRLDYEIDIIKRMK 339

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GY LIV DF++ AKK  IPVGPGRGS AG++ AY+L IT+IDPLR+ LLFERFLNP+R
Sbjct: 340  FPGYMLIVWDFVREAKKRKIPVGPGRGSAAGALVAYSLQITNIDPLRYGLLFERFLNPER 399

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD D+DFCQ+RR E+I YV+ KYG   VAQ+ITFGSL AK  LRDV R   + YS+ 
Sbjct: 400  VSMPDIDMDFCQERRGEIIEYVREKYGKVNVAQVITFGSLLAKGVLRDVARIFGIDYSEA 459

Query: 473  DRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            DR  KLIP+     ++L+   + + +  E    DP  +RL    + LEGL R+   HAAG
Sbjct: 460  DRFVKLIPDQLG--ITLEKAKELEPKIVEITEEDPLYNRLYSFGEHLEGLKRNTGMHAAG 517

Query: 532  IVIGDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            +VI D  L +  P+YR D   D  VTQ+++ ++E   LIKFDFLGLKTLT++ +++  + 
Sbjct: 518  VVISDEELWKKSPLYRQDEHDDTIVTQYSLNYLEPVDLIKFDFLGLKTLTVIDRAVKNVK 577

Query: 591  -QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
              +   +++ L+  DD + + L+ +  TLG+FQ+ES GM+   + ++P   EDIIA+++L
Sbjct: 578  FNKNEDINIDLLTLDDPKVFELIQSGHTLGLFQIESDGMQDLAKRLKPTNFEDIIAMLAL 637

Query: 650  YRPGPIDNIVV--YNNRKNGKEKIV----SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            YRPGP+D+ ++  Y +RK+G++ +         ++ P+L+ T GVI+YQEQVMQI Q + 
Sbjct: 638  YRPGPMDSGMLDDYIDRKHGRKPVSYFFDEFEEVLKPILEPTYGVIVYQEQVMQIVQAIG 697

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G+SL E+D++RRAMGKK  + M K  E F   A + G S   A ++FEL+ KFA YGFNK
Sbjct: 698  GFSLGESDIIRRAMGKKKFDLMKKYAEEFAQRAQQRGFSYDNAKSLFELIEKFAGYGFNK 757

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA+I+YQTA++KT+YP EFL+A +T E +N +KI K+ ++A+   I+++PP+VN 
Sbjct: 758  SHSAAYAMITYQTAYLKTYYPTEFLSALLTYEAENTDKIAKYIEEAKVLGIEVLPPNVNK 817

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
               +F   +++I + L+AIKGVG+     I+   A++P++SLEDF  +VD+ K+N++VLE
Sbjct: 818  SNAEFTPIEDKILFGLSAIKGVGSKAIESIV---ANRPYESLEDFILKVDTSKVNKKVLE 874

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE--KNRTNKHENIFA--HEKGTFSDKIT 939
             L+ AGA+D FG SR  +L  ++ I ++ + VE  KN  N   ++FA   E     + + 
Sbjct: 875  QLIKAGAMDDFGLSRKAMLSRVEEILEFKKRVEEKKNAINHEHSLFADMEENEEIDEHLD 934

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK-GYEESVATIRGNNIRLA 998
            +      +     E E + LGFY S HPLD YK   R  GI       V  I        
Sbjct: 935  IPNTVEFDIKTLLEYEYQTLGFYVSAHPLDPYKD--RMKGINYNLSSEVEEIISQEALFV 992

Query: 999  AMVVSKQQKKTRKGSRIGWVTF 1020
              + + + + ++KG++    T 
Sbjct: 993  GKIDAMKVRISKKGNKFAIATL 1014


>gi|168181975|ref|ZP_02616639.1| DNA polymerase III, alpha subunit [Clostridium botulinum Bf]
 gi|237796833|ref|YP_002864385.1| DNA polymerase III DnaE [Clostridium botulinum Ba4 str. 657]
 gi|182674724|gb|EDT86685.1| DNA polymerase III, alpha subunit [Clostridium botulinum Bf]
 gi|229263138|gb|ACQ54171.1| DNA polymerase III, alpha subunit [Clostridium botulinum Ba4 str.
            657]
          Length = 1185

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/1079 (36%), Positives = 631/1079 (58%), Gaps = 63/1079 (5%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q+ EK P +V L  H+ YSLL+ +  +++++ +       +IAITD   ++  ++F ++
Sbjct: 4    NQFDEKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKE 63

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   GI+PIIGC++ +    ++ +  Q K        +VLLV    GY+ L+E+VS+  +
Sbjct: 64   AIKQGIKPIIGCEIYV-ASKSMYIKQQDKEN--ETHHLVLLVKNEIGYKNLMEIVSKASV 120

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             +      R+   +L++  +EGLI L+    G +       + + AE+  L +K +F + 
Sbjct: 121  -EGFYYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFKEG 178

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ LQ H   ++ + ++ +V+++   ++PLVATN+  ++ +EDY++HD+L+ +     V
Sbjct: 179  FYLELQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTV 238

Query: 241  SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEK 298
             +++R R   D  YLK+  EM   FS +PEALENTV+I+  C+F    H   LP+F +E+
Sbjct: 239  EEENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEE 298

Query: 299  ECDDIQKEEENELRNKAVAGLEVR--LAQGAIAKGY-------------HAQDYRQRLDF 343
              D  +      LR     GL +R  + +  I K +              A D  +RL++
Sbjct: 299  GVDPYEY-----LREICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNY 353

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL++I +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+
Sbjct: 354  ELSIIKQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLI 413

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNPDR+SMPD D DFC +RR EVI YV  KYG   V+QIITFG++ A+A +RDVGR
Sbjct: 414  FERFLNPDRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDVGR 473

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            A+  PY++VDR+ K+IP      ++ +A+  +   +EA   +  V  L+++++ LEGL R
Sbjct: 474  AMNYPYAEVDRIAKMIPTVLNITIN-KALGLNPELKEAYDNEERVKELIDVARALEGLPR 532

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
            H STHAAG+VI  +PL   VP+ ++  S   VTQF M  +E+ GL+K DFLGL+TLT+++
Sbjct: 533  HTSTHAAGVVIASQPLVNYVPLQKNEES--IVTQFTMGTLEELGLLKMDFLGLRTLTVMR 590

Query: 584  KSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             ++  + + +G+ +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +ED
Sbjct: 591  DAVRIIRENKGIDIDLDTIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLED 650

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            IIA  SLYRPGP+  I  Y   KN   KI      ++P+L  T   I+YQEQVMQI + L
Sbjct: 651  IIAGNSLYRPGPMAEIPTYIANKNNPSKIKYSTQKLEPILSVTYNCIVYQEQVMQIVRDL 710

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK--------NGISKTIAVNIFELLA 754
            +GYS+  +D++RRAM KK  + M+++++ FI G  K        NGI + +A N+F+ + 
Sbjct: 711  AGYSMGRSDLVRRAMSKKKHDVMEQERKSFIYGNEKEGVKGCINNGIDEKVANNLFDSMM 770

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNKSHAAAYAV+S+QTA++  +YP EF+AA +     + +++  +   A    I
Sbjct: 771  DFASYAFNKSHAAAYAVVSFQTAYLMRYYPTEFIAAMLNSVKGDSDRVSFYVNFAETLGI 830

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873
            QI+ P++N    +F V DNRI + L A+K VG     +I+ +   K  F  L DF ++VD
Sbjct: 831  QIIAPNINESYSNFTVKDNRIIFGLTAVKNVGERGIDNIVLSREQKGKFIDLSDFFNKVD 890

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAH 929
            +  +N+R++ESL+  GA DC    R ++L    + +D IQK  +   + + N   +I  +
Sbjct: 891  TSIINKRLVESLIKTGAFDCLNVYRSKMLAVFEKIMDGIQKQKRSNIEGQVNLFMDIMDN 950

Query: 930  EKGTFSDKI-TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR------------ 976
            ++ +   K   +++F   +     + E+ + G YFSGHPL+ Y+  L+            
Sbjct: 951  KESSMDIKYPNIKEF---DKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIT 1007

Query: 977  KMGIKG-YEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K  ++G   +++ +I+ G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1008 KESLEGNLVDTMNSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|220909694|ref|YP_002485005.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 7425]
 gi|219866305|gb|ACL46644.1| DNA polymerase III, alpha subunit [Cyanothece sp. PCC 7425]
          Length = 1162

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/1056 (37%), Positives = 611/1056 (57%), Gaps = 52/1056 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  L  ++ +      PAIA+TD   ++ A+E  +      ++P
Sbjct: 2    SFVGLHIHSDYSLLDGASQLPELIGRAQELGMPAIALTDHGVMYGAVELLKTCRGKSVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQS 128
            IIG ++ +   D   +T Q + P       V+L     GY+ L++L S   L   QGK  
Sbjct: 62   IIGNEMYVINGD---ITKQERRPRY---HQVVLAKNNTGYKNLVKLTSISNLKGVQGKGI 115

Query: 129  V-RICLSWLQEIGT---EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              R C++  +E+ T   EGLI+ +    G I +A      ++A +    +K LF D  Y+
Sbjct: 116  FSRPCIN--KELLTQYHEGLIVTSACLGGEIPQAIMQGKPEIARRVAQWYKDLFKDDFYL 173

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +Q H    DR    ++V+++    + ++ATN+S F+S  D EAHD L+ +    ++++ 
Sbjct: 174  EIQDHGSQEDRVVNVELVRISQELGIKIIATNDSHFISCYDVEAHDALLCIQTGKLITED 233

Query: 244  DRPRVTPDHYLKNRSEMVSIFSD-LPE-----ALENTVEIARRCSFILQVHAPILPRFIE 297
             R R +   YLK+  EM  +F D LPE     A+ NT+E+A +         P  P F  
Sbjct: 234  KRLRYSGTEYLKSAEEMALLFRDHLPEEVIKQAITNTLEVAEKIEPYDIFREPQSPHFPV 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                      E  L + A  GL  R  + +  +     DYR+RL++EL ++ +M FS YF
Sbjct: 294  PAG----HTAETYLEDVAWQGLLKRCNKNS--RSEIEPDYRERLEYELKMLQKMGFSTYF 347

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+V D+I++A+ + IPVGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R SMPD
Sbjct: 348  LVVWDYIKYARDHGIPVGPGRGSAAGSLVAYAMGITNIDPVHHGLLFERFLNPERKSMPD 407

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D DFC DRRDEVI+YV  KYG +RVAQIITF  + +KA L+DV R L +PY + DR+ K
Sbjct: 408  IDTDFCIDRRDEVIKYVTEKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADRMAK 467

Query: 478  LIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            +IP     P  L+ +  D+     F+E    DP+V   ++++ ++EG  +    HAAG+V
Sbjct: 468  MIPVSRGKPAKLKVMISDATPAPEFKEKYDKDPNVRHWIDMAIRIEGTNKTYGVHAAGVV 527

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
            I   PL ++VP+ R+    + +TQ+ M+ +E  GL+K DFLGLK LT+++K+LD + Q +
Sbjct: 528  IASEPLDEIVPLQRNNDGAV-ITQYFMEDLESLGLLKMDFLGLKNLTMIEKTLDLIKQHK 586

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +DL  +P DD E+Y LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRP
Sbjct: 587  KTDLDLDRLPLDDAESYKLLARGELEGIFQLESSGMRQVVRDLKPSNLEDISSILALYRP 646

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+D  ++  + NRK+G+E I   H ++ P+L ET G+++YQEQ+M+IAQ ++GYSL +A
Sbjct: 647  GPLDAGLIPKFINRKHGRENIDYPHEILKPILNETYGIMVYQEQIMKIAQDMAGYSLGQA 706

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK   EM K +E F+ GA+KNG+    A  +F+ +  FA+Y FNKSH+ AY 
Sbjct: 707  DLLRRAMGKKKVSEMQKHQEIFVEGAAKNGVKSKTAQELFDQMVLFAEYCFNKSHSTAYG 766

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++YQTA++K +YPVE++AA +T    + +K++K+        I + PP +N   VDF  
Sbjct: 767  YVTYQTAYLKANYPVEYMAALLTANSGDQDKVQKYIGSCLSMGISVEPPDINRSGVDFTP 826

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +  I + L+A++ VG      I+ A  +  PF SL D C R+D + +NRR LE+L+  G
Sbjct: 827  LEKSILFGLSAVRHVGEGAIADILAARESAGPFQSLADLCDRIDPRTVNRRALEALINCG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-------AHEKGTFSDKITLEK 942
            A+DC   +R QL+  L+ + +++Q   K+R     N+F            +F        
Sbjct: 887  AMDCLELNRNQLIHDLELVLEWSQSRAKDRAIGQGNLFDMLGGSSTQSTSSFEAAPKAPP 946

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPL-DVYKP--ILRKMGIKGYEESVATIRGNNIRLAA 999
                  + +   E+ +LGFY S HPL +V K   IL  + +   E+     + +N+ L+A
Sbjct: 947  VPDLEQTEKLRLEKELLGFYISNHPLKEVQKTARILAPISLANLED-----QPDNVTLSA 1001

Query: 1000 MVVSKQQKK--TRKGSRIGWVTFSEPAKEYEANFFP 1033
            +V+  + KK  T+KG  +      +   + EA  FP
Sbjct: 1002 IVMLTELKKVVTKKGDNMAIAQLEDLTGKAEAVVFP 1037


>gi|72382105|ref|YP_291460.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str.
            NATL2A]
 gi|72001955|gb|AAZ57757.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str.
            NATL2A]
          Length = 1172

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/1062 (37%), Positives = 614/1062 (57%), Gaps = 58/1062 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV +  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +   AA I+P
Sbjct: 2    AFVPIHNHSDYSLLDGASQLPLMVQRAKELGMPALALTDHGVMYGAIELLKLCKAANIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE---GYQRLIELVSRMYLLDQGK 126
            IIG ++ +       +      P P       LV  A+   GY+ L++L +  +L     
Sbjct: 62   IIGNEMYV-------INGSIDDPQPKKEKRYHLVVVAKNQIGYENLVKLTTLSHLNGVRG 114

Query: 127  QSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            + +  R C+  +L +  +EGLI  T    G I +A     + VA +    +K++ GD  Y
Sbjct: 115  RGIFSRPCIDKYLFKKYSEGLICSTACLGGEIPQAILKGRNDVAREVAAWYKEVLGDDFY 174

Query: 184  VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H    DR   S++V+++   ++ ++ATN++ +LS+ D EAHD L+ V    ++S 
Sbjct: 175  LEIQDHGSIEDRIVNSEIVKISEELDIKIIATNDAHYLSKNDIEAHDALICVLTGKLISD 234

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296
              R R T   Y+K+  EM S+F+D      +  A+ENTV+++ +      +    +P F 
Sbjct: 235  HKRLRYTGTEYIKSEDEMRSLFTDHLDKNVINSAIENTVKLSNKVEEYKILGTYKMPNF- 293

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ-DYRQRLDFELNVIARMKFSG 355
                D  Q  E   L+   + GL   L    I+K  +    Y++RLD+EL VI +M F  
Sbjct: 294  -PIPDGYQPIE--YLKEITIKGL---LEILDISKFENLPITYKERLDYELKVIEQMGFPT 347

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+V D+I++A++ NIPVGPGRGS AGS+ A++L IT+IDP+   LLFERFLNP+R SM
Sbjct: 348  YFLVVWDYIRFAREQNIPVGPGRGSAAGSLVAFSLHITNIDPVENGLLFERFLNPERKSM 407

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D DFC +RR EVI YV  KYG ++VAQIITF  + +KA L+DV R L +PY   DRL
Sbjct: 408  PDIDTDFCIERRGEVIDYVTKKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRL 467

Query: 476  CKLIPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             KLIP     P  L A+    + +  F E    D  V + ++++ ++EG  +    HAAG
Sbjct: 468  AKLIPVVRGKPAKLAAMISKESPNKDFYEKYNNDSKVKKWVDMAMRIEGTNKTFGVHAAG 527

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI    L  LVP+ R+    + +TQ+ M+ IE  GL+K DFLGL+ LT+++K++D + +
Sbjct: 528  VVIAANSLDNLVPLQRNNDGQI-ITQYFMEDIESLGLLKMDFLGLRNLTMIEKTIDLVEK 586

Query: 592  R-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              G ++D   +PF D +T+ LL+     GIFQLESSGMRQ ++ ++P  +EDI ++++LY
Sbjct: 587  SIGKRLDPDSLPFTDEKTFELLSRGDLEGIFQLESSGMRQIVKDLKPSSLEDISSILALY 646

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+D  ++  + NRK+GKE I   H  ++P+L ET G+++YQEQ+M+IAQ L+GYSL 
Sbjct: 647  RPGPLDAGLIPKFINRKHGKESIDFQHQSLEPILSETYGIMVYQEQIMKIAQDLAGYSLG 706

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            +AD+LRRAMGKK   EM + +  F+ GA KNG++  IA  +F+ +  FA+Y FNKSH+ A
Sbjct: 707  QADLLRRAMGKKKVSEMQRHRAIFVDGAVKNGVTNVIAEQLFDQMVLFAEYCFNKSHSTA 766

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y  ++YQTA++K HYPV ++AA +T+   + +KI+++  +     I +MPP++NT  VDF
Sbjct: 767  YGAVTYQTAYLKAHYPVAYMAALLTVNAGSADKIQRYISNCNSMGINVMPPNINTSGVDF 826

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               DN I +  +A+K +G    R I+ +   D  F SL  FC R+    +NRR LE+L+ 
Sbjct: 827  TPKDNSILFGFSAVKNLGDGAIRKIITSRDEDGQFTSLAQFCDRISLGSVNRRGLEALIH 886

Query: 888  AGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS- 944
            +GALDC     +R QL+  LD   ++A    K+RT+   N+F     T ++    + +S 
Sbjct: 887  SGALDCLEKNANRAQLIADLDLTIEWASSRAKDRTSGQGNLFDLSNSTNNESSPTDDYSS 946

Query: 945  ----------VENSSVRFENEQRVLGFYFSGHPL-DVYKP--ILRKMGIKGYEESVATIR 991
                      + +  ++ E E   +GFY S HPL  + +P  ++  + +   E+      
Sbjct: 947  APKAKEVQEYLPSDKLKLEKEH--VGFYLSDHPLKQLSEPAKLIAPISLSSLEDQKDK-- 1002

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + + + AM+   ++  TRKG R+  +   +     EA  FP
Sbjct: 1003 -SKVSVIAMIPEMREVTTRKGDRMAIIQLEDLTGSCEAVVFP 1043


>gi|167005356|ref|ZP_02271114.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 1169

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1001 (39%), Positives = 591/1001 (59%), Gaps = 55/1001 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4   FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  +   D L      +  F     + L      GYQ L+ L S+ Y+  +G     
Sbjct: 64  IGMEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180
                L E  +EGLI  +    G +        +R   F +   + A++  L +KK+F D
Sbjct: 117 RINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y  + RH  G  R  +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
           ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLDLNLGNPTPPNFKFT 296

Query: 296 --IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDFE 344
               K+ + I  EE  E    N  +        GLE RL    I +  H ++Y+QRL+ E
Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLK--FIDESKH-EEYKQRLEVE 353

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523
             M     D L KL+P +    ++L A  + + + +E     P    + E ++ LEGL R
Sbjct: 474 CDMSIQDADELAKLVPEELK--ITLDAAYEKEPKIKEFIDRHPKGPEVWEYARALEGLNR 531

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581
           +A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT+
Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591

Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           +  ++  + +R  K +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  
Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
           EDIIA+++LYRPGP+++ ++  + +RK+G + I      ++ +L+ T GVI+YQEQVMQI
Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA 
Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAG 771

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++P
Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831

Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
           PS+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D 
Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T 
Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTS 951

Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             ++      E+F V     +   E+ +LG Y SGHPLD +
Sbjct: 952 GVQVNFTPKNEEFEVME---KLGYEKEILGIYVSGHPLDRF 989


>gi|150019661|ref|YP_001311915.1| DNA polymerase III DnaE [Clostridium beijerinckii NCIMB 8052]
 gi|149906126|gb|ABR36959.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
            8052]
          Length = 1191

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/1080 (36%), Positives = 615/1080 (56%), Gaps = 73/1080 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+G+  +  ++ K       +IAITD   L+  ++F + A    I+PI
Sbjct: 6    FCHLHLHTEYSLLDGSGKIGKLMKKAKELGMKSIAITDHGVLYGLVDFYKAAKENDIKPI 65

Query: 71   IGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +GC++ +  +  ++K  ++  + +     +VLLV    GY+ L+++VS +  ++      
Sbjct: 66   LGCEVYVVPKSRHIKQPDKENSTY----HLVLLVKNQIGYENLMKIVS-VASIEGFYYKP 120

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI   +L++  +EGLI L+    G +       + + A++  LT+K++F    Y+ LQ H
Sbjct: 121  RIDYEYLRK-HSEGLIALSACLGGEVQSYHLKGNYEKAKETALTYKEIFNGDFYIELQNH 179

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ R   + ++L+    +PLVATN+  ++S+ED  +HDVLM +  +  +    R R 
Sbjct: 180  GMEEQKRVNEENIKLSNETGIPLVATNDVHYISKEDSRSHDVLMCIQTAKTIDDPHRRRY 239

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FS +PEALENT++IA  CS+  + H   LP+F  +E  D     
Sbjct: 240  PSDQFYLKSADEMWDMFSYVPEALENTIKIANECSYEYKFHESKLPKFPLEEGQD----P 295

Query: 308  ENELRNKAVAGLEVRLA---------------QGAIAKGYHAQDYRQRLDFELNVIARMK 352
             + LR+    GL  R +               +  +A    A++Y  RL++EL VI +M 
Sbjct: 296  YDYLRDTCYKGLIDRYSVFENLRNQNLDYSKIEEVVANYEEAKEYVDRLEYELQVIKQMG 355

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            +  YFLIV DF++++ ++ IP GPGRGS AGS+ AY L IT IDP+++SL+FERFLNP+R
Sbjct: 356  YIDYFLIVWDFVRFSYESGIPTGPGRGSAAGSIVAYTLGITKIDPIKYSLIFERFLNPER 415

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD D DFC +RR EVI YV  KYG   V+QIITFG++ A+  +RDVGRA+   Y++V
Sbjct: 416  VSMPDIDSDFCYERRQEVIDYVVEKYGASNVSQIITFGTMAARLCIRDVGRAMNYSYAEV 475

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            DR+ K+IP      +  +A+  +   + A   D  V  L+++S+ LEGL RH+STHAAG+
Sbjct: 476  DRIAKMIPTMLGITIE-KALDLNPELKLAYDTDERVKALIDVSKDLEGLPRHSSTHAAGV 534

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
            VI  +PL + VP+ ++   ++ VTQF M  +E+ GL+K DFLGL+TLT++  ++  + + 
Sbjct: 535  VIASKPLVEYVPLQKN--DEMIVTQFGMNTLEELGLLKMDFLGLRTLTVMNDAVKMIKEN 592

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            RGV VDL  I F+D E Y+++    T G+FQLES GM   ++ ++PD  EDIIA +SLYR
Sbjct: 593  RGVDVDLDKIDFEDEEVYNMIGEGNTAGVFQLESPGMTSFMKELKPDSFEDIIAGISLYR 652

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+  I  Y   K   EK+  +   ++P+L  T G ++YQEQVMQ  + L+GYS+  +D
Sbjct: 653  PGPMAEIPRYIEGKKNSEKVTYLTKELEPILGVTYGCLVYQEQVMQAVRDLAGYSMGRSD 712

Query: 712  VLRRAMGKKIKEEMDKQKERFIS-----------GASKNGISKTIAVNIFELLAKFADYG 760
            ++RRAM KK  + M+++++ FI            G  +NGIS+ IA  IF+ +  FA Y 
Sbjct: 713  MVRRAMSKKKHKVMEEERKNFIHGIVENDEVIVPGCVRNGISEEIANKIFDSMMDFASYA 772

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSHAAAYAV+ YQTA++  +YPVE +AA +   M   EK+  +   A +  IQ++PP+
Sbjct: 773  FNKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSIMGISEKVAYYIGIAEELGIQVLPPN 832

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNR 879
            +N     F V +N+I + LAAIK VGT     I++A  +K  F+SL DF +++D   +N+
Sbjct: 833  INESFSKFTVKENKIRFGLAAIKNVGTNVVASIVKAREEKGKFESLVDFINKMDPSSINK 892

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KGTFSDK 937
            R +E L+ AGALD F   R ++L   + +       ++   +   ++FA E  K    + 
Sbjct: 893  RAVECLIKAGALDDFDVFRSKMLAVHEKLIDNISSDKRRNIDGQISLFASEELKNPEVNY 952

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR--------------------- 976
              +++F+  N       E+ + G Y +GHPLD Y   L+                     
Sbjct: 953  PNIKEFTKRN---LLAMEKEMTGLYITGHPLDDYAQSLKMQTTNEISKIFLVQETLDDSL 1009

Query: 977  --KMG-IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               MG I  +    A    + + L  ++ S  QK TR  S + ++   +     E   FP
Sbjct: 1010 ESDMGEINMFNRQDALQDNDRVILGGILASVNQKVTRNNSIMAFLKLEDLTGTIEVIVFP 1069


>gi|228903122|ref|ZP_04067258.1| DNA polymerase III subunit alpha [Bacillus thuringiensis IBL 4222]
 gi|228856531|gb|EEN01055.1| DNA polymerase III subunit alpha [Bacillus thuringiensis IBL 4222]
          Length = 1108

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/1033 (36%), Positives = 611/1033 (59%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306
             D +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     E  DI   
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     GL  R        G   + + +RL+ ELNVI+RM FS YFLIV DF+++
Sbjct: 284  ----LRRVCEEGLRKRY-------GAPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAERVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEERKKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            +    +YA               A + G   D +   K+ V+   + F      E+  LG
Sbjct: 870  IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|30022680|ref|NP_834311.1| DNA polymerase III DnaE [Bacillus cereus ATCC 14579]
 gi|29898239|gb|AAP11512.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
          Length = 1108

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/1033 (36%), Positives = 610/1033 (59%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  ILKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVDRTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYRESQVVQLAYTH-ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + +    +   +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLLEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306
             D +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     E  DI   
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     GL  R  +    K  H +    RLD ELNVI+RM FS YFLIV DF+++
Sbjct: 284  ----LRRVCEEGLRKRYGE---PKEVHIK----RLDHELNVISRMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKIGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            +    +YA               A + G   D +   K+ V+   + F      E+  LG
Sbjct: 870  IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|238926991|ref|ZP_04658751.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
 gi|238885225|gb|EEQ48863.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
          Length = 1130

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/1041 (36%), Positives = 606/1041 (58%), Gaps = 44/1041 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+GA  +  ++ +       A+A+TD   ++ A+ F ++A A GI P
Sbjct: 2    AFAHLHVHTEYSLLDGASRIKELVCRTKELGMDAVAMTDHGVMYGAVAFYKEAKAQGIHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +   +      T +     ++LL     GY+ L++L+S +  ++      
Sbjct: 62   IIGCEVYLAPRQRQERAEVNGTRYY---HLILLAENECGYRNLVQLIS-LANIEGYYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            RI    L+    +GLI L+   +G I +A      ++A+  +  +  +FG D  ++ +Q 
Sbjct: 118  RIDKELLRRF-HKGLIALSACVAGEIPQAVLRGDMELADALVREYSGIFGRDNFFLEIQD 176

Query: 189  HRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +  + ++ ++ LA  H + LVATN+  +++ ED E HD+L+ V     ++  DR R
Sbjct: 177  HGLPEEKKVNRTLRRLAEKHNIGLVATNDVHYVNTEDSEFHDILLCVQTGRTLNDPDRMR 236

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKECDDI 303
             + PD+YLK+  EM ++F+D P A+ENT +IA RC       ++  P  P       DD 
Sbjct: 237  FSGPDYYLKSEEEMTALFADYPGAIENTAKIAERCQVDFTFGELQLPFYPLPGGYTTDD- 295

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                 + LR      +  R             +  QRLD+EL VI +M ++ YFLIV DF
Sbjct: 296  -----DYLRALCTERIPARYPAAG-------NEVHQRLDYELGVIHKMGYASYFLIVWDF 343

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I +A+ + + VGPGRGS AGS+ A+ L IT+IDPLR++LLFERFLNP+R+SMPD DIDF 
Sbjct: 344  INYARGHGVAVGPGRGSAAGSIVAFLLGITNIDPLRYALLFERFLNPERVSMPDIDIDFD 403

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
               R  VI YV+ +YG + VAQI TFG++ AK A+RDV R L+MP+ +V  + KL+P + 
Sbjct: 404  DINRGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVARVLEMPFGEVSTITKLVPAEL 463

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A+ + + FR     D    R++++++K+EGL R+ S HAAG+VI   PL+  V
Sbjct: 464  NITLD-RALKESADFRRRYEEDEEAHRVIDLARKIEGLPRNTSIHAAGVVIAKSPLTSQV 522

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P++  V     VT+++   +E  GL+K DFLGL+TL+++  +++ + Q  GV +++  IP
Sbjct: 523  PVW--VSEGTLVTEYDKDDVEALGLLKMDFLGLRTLSIIADAVENIRQSHGVDINMDRIP 580

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
              D +T  +L    T  +FQ+ES+GM   ++ +QP    D+I  V+LYRPGP+ + +V  
Sbjct: 581  LIDEKTSQMLCNGDTGAVFQMESAGMTNLVKELQPKGFVDLIPTVALYRPGPLGSGMVTD 640

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + +  +GK+ +V +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK
Sbjct: 641  FIDGLHGKKDVVYMHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKK 700

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              E +  QKE F+ G  KNGI+  +A +IF+LL  FADYGFNKSH+AAY ++++QTA++K
Sbjct: 701  KHELLMAQKEIFLQGCEKNGIAAELANHIFDLLTHFADYGFNKSHSAAYGLLAWQTAYLK 760

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEF+A  +T  MD  +KI  + Q   Q  I I+PP +N     F + D  I + LA
Sbjct: 761  AHYPVEFMAGVLTSIMDKTDKIPVYIQLCHQMKINILPPDINASTASFSIEDGAIRFGLA 820

Query: 841  AIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            A++ VG      +++  A+   F SL +FC+RVD + +N+R +ESL+  GA DC G  R 
Sbjct: 821  AVRNVGEAAIGSMVQVRAEGGKFHSLVNFCARVDMRTMNKRAIESLIKCGAFDCLGRERN 880

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSSVRFENEQRV 958
            QLL SLD   + A   +++R +    +F+ +      +I          +  R   E+  
Sbjct: 881  QLLYSLDFAMQDAARSQRDRMSGQIGLFSSDTMESVQQIQDFPDVPPTTAEERLMWEKEA 940

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG------NNIRLAAMVVSKQQKKTRKG 1012
             GFY +GHPLD Y+  L  +        +  IRG        +R+  ++ + ++  T+KG
Sbjct: 941  TGFYITGHPLDDYRDTLSSL------LPINDIRGELRKDRQLVRIGGILTNTKRYTTKKG 994

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + +    + +   E   FP
Sbjct: 995  DTMLFAEMEDFSGRIEVTVFP 1015


>gi|304438918|ref|ZP_07398841.1| DNA polymerase III alpha subunit [Peptoniphilus duerdenii ATCC
            BAA-1640]
 gi|304372584|gb|EFM26167.1| DNA polymerase III alpha subunit [Peptoniphilus duerdenii ATCC
            BAA-1640]
          Length = 1140

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/1048 (36%), Positives = 602/1048 (57%), Gaps = 55/1048 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G+  +  +  K+      +IAITD  N+F A++F +     G++PI
Sbjct: 2    FTHLHVHTEYSLLDGSTRIKELPKKVKELGMDSIAITDHGNMFGAIQFYKACKDEGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +    NL + ++    +     ++LL    +GY+ L+++VS+ ++ D      R
Sbjct: 62   MGCEVYVS-STNLNVKDRTSKRY----HLILLAENNKGYENLMKIVSKGWV-DGFYYKPR 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +    L+E  +EG+I L+    G + R       + A K  L ++ +FG D  ++ +Q H
Sbjct: 116  VDKKVLREY-SEGIIALSACLQGEVQRKILDRDFEAARKAALEYQDIFGKDNFFLEVQNH 174

Query: 190  RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             G     E+ +     + EL  PL ATN+  +L + D +AHDVL+ +   T++S   R +
Sbjct: 175  -GIREQLEANIHLRNLSGELGIPLAATNDVHYLEKSDAKAHDVLLCIQTGTILSDGKRMK 233

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  YLK+  EM     D  +A+ENT EIA+RC+  ++ H   LP+F      D+   
Sbjct: 234  FPSDEFYLKSEDEMKEALPDFVDAIENTYEIAKRCNVTIEFHNYHLPKF------DVPDG 287

Query: 307  EENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFLIVAD 362
              N+  L+  A+ GL  +         Y   D +  +R +FELN I  M ++ YFLIV D
Sbjct: 288  YTNDEYLKELALKGLREK---------YENLDEKIMERFNFELNTIISMGYTDYFLIVWD 338

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI +AK+N I VGPGRGS AGS+ +Y L I D+DPLRF LLFERFLNP+R+SMPD DIDF
Sbjct: 339  FINYAKENGIMVGPGRGSAAGSIISYGLGIIDVDPLRFDLLFERFLNPERVSMPDIDIDF 398

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR+EVI YV  KYG + VAQI TFG++ A+ A+RDVGR + + YS+VD++ K+IP +
Sbjct: 399  CYERREEVIEYVNRKYGKDHVAQIATFGTMAARGAIRDVGRVMDISYSKVDQVAKMIPQE 458

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                ++ +AI      R A   DP V  +++ + K+EGL RH STHAAG+VI +R ++  
Sbjct: 459  LNITIN-KAIEMSEDLRNAMRDDPQVKGIIDTALKVEGLPRHMSTHAAGVVISNRDVTDY 517

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
            VP+ R    +  +TQFNM  +E+ GL+K DFLGL+TLT+++ +++ + +  G+++D    
Sbjct: 518  VPLAR--TDEQLLTQFNMTELEELGLLKMDFLGLRTLTVIRDAVNMVKENYGIEIDFKDQ 575

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             FDD E   L     TLGIFQ ESSGMR  L+ ++ D  ED++A  +L+RPGP+  I  +
Sbjct: 576  GFDDKEVIDLFKHANTLGIFQFESSGMRAFLKELKADAFEDLVAANALFRPGPMSQIPRF 635

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K+   KI  IHP ++P+L  T G I+YQEQVMQI Q + GYSL  AD++RRAM KK 
Sbjct: 636  IESKHDPSKISYIHPSLEPILNVTYGCIVYQEQVMQIVQQIGGYSLGRADLVRRAMSKKK 695

Query: 722  KEEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
               M++++  F            I GA  NG+ +  A  I++L+  FA+Y FNKSH+ AY
Sbjct: 696  MSVMEEERNNFIYGLKDEEGNVLIKGALANGVDEKSANEIYDLMIDFANYAFNKSHSVAY 755

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            +V++Y+TA++K +YP EF+A+ ++  M + +++  + ++ ++ NI+++PPSVN     F 
Sbjct: 756  SVVAYRTAFLKRYYPKEFMASQISSFMSSPKQVALYAEELKRLNIKLLPPSVNESRNKFT 815

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR---VDSKKLNRRVLESLV 886
            V ++ + + L A+K VG      I+EA  +K F S+ DF  R   V+S  +N+R LESL+
Sbjct: 816  VEEDAVRFGLKAVKNVGDNFIDAIVEARKEKKFTSMTDFIRRVVEVNSSAINKRALESLI 875

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGA D    +R + L   + I +  Q   KN      ++F +EK    D   L+ F   
Sbjct: 876  KAGAFDFLPGNRAKYLAVYERILESVQSGIKNNVKGQFSMF-NEKTDEDDLPNLKDF--- 931

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-IRGNNIRLAAMVVSKQ 1005
            +   +   E  +LG Y SGHPL+ Y+  +         +     + G N++++ ++  K+
Sbjct: 932  DEKTKLNMEYEMLGIYASGHPLNPYRNAIENNSSTNTSKIFENPVNGQNVKISGIIKQKR 991

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               T+    + + T  +     E   FP
Sbjct: 992  NLITKNNKMMCFATLEDFFGTIELIVFP 1019


>gi|15639656|ref|NP_219106.1| DNA polymerase III subunit alpha [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025894|ref|YP_001933666.1| DNA polymerase III subunit alpha [Treponema pallidum subsp.
           pallidum SS14]
 gi|6014994|sp|O83675|DPO3A_TREPA RecName: Full=DNA polymerase III subunit alpha
 gi|3322971|gb|AAC26567.1| DNA polymerase III, subunit alpha (dnaE) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018469|gb|ACD71087.1| DNA polymerase III, subunit alpha [Treponema pallidum subsp.
           pallidum SS14]
 gi|291060035|gb|ADD72770.1| DNA polymerase III subunit alpha [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 1170

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/978 (39%), Positives = 574/978 (58%), Gaps = 34/978 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-GIQ 68
           SFVHL VHS+YSLL+GA SL  ++    +  Q A+A+TD  N+F AL F QK C+A GI+
Sbjct: 5   SFVHLHVHSNYSLLDGASSLQRLVRTAKSLGQEALALTDHGNMFGALHF-QKVCSAEGIK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQ--GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IIGC+L +  +     +    G+  +     +++L     GY+ L+ L S+ Y+  +G 
Sbjct: 64  AIIGCELYVAPESRFDRSEHTIGRRYY----HLIVLAKNETGYRNLMVLSSKAYI--EGM 117

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
                    L     EGLI L+   +G +         + AE+    ++ LFG D  ++ 
Sbjct: 118 YYKPRVDDELLAQHAEGLICLSSCLAGQLPYLLLQGRKREAEEHARKYRALFGVDNYFIE 177

Query: 186 LQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
           +Q H G D  ++    +++LA    +PLV TN+  +  +ED  A D+L+ +      S  
Sbjct: 178 VQDH-GLDEEKKVAPLLIELACRLGIPLVVTNDVHYAEQEDSVAQDILLCIGTKKNRSDP 236

Query: 244 DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECD 301
           +R +   D  YLK+  +M  +F   PE + NTV IA+RC+  +    P+LP + I  E  
Sbjct: 237 NRLKFKTDEFYLKSSEKMAQLFPHYPEMVLNTVRIAQRCNVRIPQPGPLLPLYQIPHEFS 296

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                +E+ +R+    GL  R A         +++ + R D+EL+VI RM F GYFLIV 
Sbjct: 297 S----KEHYIRHLVHRGLYDRYA-------VVSEEIKARADYELDVIVRMDFVGYFLIVW 345

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFI WAK+++IPVGPGRGSGA S+ AYAL ITDIDPLR+ LLFERF+NP+R+SMPDFDID
Sbjct: 346 DFITWAKEHDIPVGPGRGSGASSIVAYALKITDIDPLRYKLLFERFMNPERISMPDFDID 405

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC +RR EVI YV+ +YG++ V QIITFG+L+ KAA+RDVGR L +P S+V  + KL+P+
Sbjct: 406 FCFERRQEVIEYVRARYGNDNVGQIITFGTLKPKAAIRDVGRVLDIPLSEVLMITKLMPD 465

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
           DP   ++ +   +  +  + +  +P    L +I++KLE   R+ S HAAGIVIG   L+ 
Sbjct: 466 DPK--LTFKKAYESEQLAQMK-QEPRYAELFQIAEKLEDTNRNTSLHAAGIVIGKTALTD 522

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDL 598
            VP+Y+D ++    TQF M  IE  GL+K DFLGLKTLTL+Q++ + + ++G K     +
Sbjct: 523 YVPLYKDSKTGKISTQFGMDLIEDCGLVKMDFLGLKTLTLIQRTQNLVRRKGGKYTTFSI 582

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
           S I   D  T+ +L    +  +FQ ES GM+  L+  +P  +ED+IAL +LYRPGP+  I
Sbjct: 583 SDISDQDPTTFSMLAEGKSAAVFQFESRGMQGILKRAKPSKMEDLIALNALYRPGPMAFI 642

Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             Y   K    KI    P ++ +L ET GVI+YQEQVMQ+AQ ++G+SL EAD+LRRAMG
Sbjct: 643 DQYIESKRDPGKIKYPDPCLEDILSETYGVIVYQEQVMQVAQRIAGFSLGEADILRRAMG 702

Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           KK    M ++K+ F   A K G  K  A NIFE+L  FA YGFNKSHA AY+V++YQTA+
Sbjct: 703 KKKLAVMQEKKKEFAERAEKQGFDKKHAENIFEILIPFAGYGFNKSHATAYSVVAYQTAF 762

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
           +K ++P EF+AA+++ E+++ EK+  +  +A +  + I  P VN     F V +  I Y 
Sbjct: 763 LKANFPAEFMAANLSNEINSAEKLPLYMAEAEKMGLSIQKPDVNASEPYFSVCEGCIVYG 822

Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L  IKG+G   A  +  E   + P+ S  +   RV +  LN++  E ++ AG  D FG +
Sbjct: 823 LLGIKGLGEQVAFDVFDERIRNGPYTSFVEVLDRVPATSLNKKNAEIMIKAGCFDRFGVT 882

Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
           R  L   LD+  KY    +   +++  ++F         + T       +   R   E+ 
Sbjct: 883 RASLTAHLDDAMKYVARKKAVTSSRQASLFDETDLGECSEYTFPVMEEWSQRERLRIEKE 942

Query: 958 VLGFYFSGHPLDVYKPIL 975
           ++G+Y SGHPLD Y+ ++
Sbjct: 943 LMGYYISGHPLDEYRSVI 960


>gi|324328496|gb|ADY23756.1| DNA polymerase III DnaE [Bacillus thuringiensis serovar finitimus
            YBT-020]
          Length = 1108

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1033 (36%), Positives = 610/1033 (59%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + + P+P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEEKPYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG+  Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFGN-FYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F       +   E 
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPANET 279

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            N+  LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++
Sbjct: 280  NDTYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+ G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIMQKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            L    +YA               A + G   D +   K+ V+   + F      E+ VLG
Sbjct: 870  LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|254520595|ref|ZP_05132651.1| DNA polymerase III DnaE [Clostridium sp. 7_2_43FAA]
 gi|226914344|gb|EEH99545.1| DNA polymerase III DnaE [Clostridium sp. 7_2_43FAA]
          Length = 1187

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/1012 (37%), Positives = 588/1012 (58%), Gaps = 67/1012 (6%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S  F HL +H+ YSLL+G+  +  I+ +       +IAITD   ++  + F ++A   GI
Sbjct: 5   SKKFTHLHLHTEYSLLDGSGKIKKIISRAKELGMDSIAITDHGVMYGCVSFYKEAIEQGI 64

Query: 68  QPIIGCQ-------LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
           +PI+GC+       +DI + D    T+           +VLLV   EGY+ L+E+VS+  
Sbjct: 65  KPILGCEIYVAAKSMDIKINDKENSTHH----------LVLLVKNEEGYKNLMEIVSQAS 114

Query: 121 LLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
           +  +G     R+   +L+   ++GLI L+    G +      ++ + A++  L +K +F 
Sbjct: 115 I--RGFYYKPRVDHDFLRS-HSDGLIALSACLGGEVQSWHLKDNYEKAKEVALLYKDIFK 171

Query: 180 DRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
           D  Y+ +Q H G D  R+     ++L+    +PL+ATN+  ++++ D E+HDVLM +   
Sbjct: 172 DGFYLEIQNH-GMDEQRKVIEGNIKLSKETGIPLIATNDVHYINQRDSESHDVLMCIQTG 230

Query: 238 TVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
             +   +R R   D  YLK+  +M  +FS +PEALENT++IA  C+F  + H   LP+F 
Sbjct: 231 KTIDDPNRRRYPSDQFYLKSPEQMWDMFSHIPEALENTIKIAEECNFDYEFHVSKLPKFP 290

Query: 297 EKECDDIQKEEENELRNKAVAGLEVR-----------LAQGAIAKGYHAQD----YRQRL 341
             E      E    L+N   +GL  R           L    +   Y   +    Y +RL
Sbjct: 291 VPE----GIEPYEYLKNVCYSGLIERYEVFKEFLNRPLNVEELVDYYKTNEEACGYIERL 346

Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
           ++EL+VI +M +  YFLI  DFI+++ +N IP GPGRGS AGS+ AY L IT IDP+++S
Sbjct: 347 EYELSVIKQMGYVDYFLITWDFIRFSNENGIPTGPGRGSAAGSIVAYTLGITKIDPIKYS 406

Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
           LLFERFLNP+R+SMPD D DFC +RR EVI YV  KYG   V+QIITFG++  +A +RDV
Sbjct: 407 LLFERFLNPERVSMPDIDSDFCYERRQEVIDYVVEKYGINNVSQIITFGTMAPRACIRDV 466

Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
           GRA+   Y++VDR+ K+IP      +  +A+  +   + A   +  V  L+++S+ LEGL
Sbjct: 467 GRAMNYSYAEVDRIAKMIPTMLGITID-KALEINPELKAAYNNEERVKALIDVSKDLEGL 525

Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
            RH+STHAAG+VI  +PL + VP+ R+   D  V QF+M  +E+ GL+K DFLGL+TLT+
Sbjct: 526 PRHSSTHAAGVVIASKPLVEYVPLQRN--EDSIVAQFDMTTLEELGLLKMDFLGLRTLTV 583

Query: 582 LQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           +  ++  + + +G+ ++L  I F+D + Y+++    T G+FQLES GM   ++ ++PDC+
Sbjct: 584 MNDAVKMIKENQGIDINLDKINFEDKDVYNMIGEGKTAGVFQLESPGMTSFMKELKPDCL 643

Query: 641 EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
           EDIIA +SLYRPGP+  I  Y   K   +K+    P ++ +L  T GV++YQEQVM+I +
Sbjct: 644 EDIIAGISLYRPGPMGEIPRYVECKQNPDKVEYEVPELEDILNVTYGVMVYQEQVMEIVR 703

Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI------------SGASKNGISKTIAVN 748
            L+GYS+  +D++RRAM KK  + M+++++ FI             G  +NGIS+  A  
Sbjct: 704 KLAGYSMGRSDLVRRAMSKKKHKVMEEERKNFIYGVVDDNGNIEVPGCKRNGISEEAANK 763

Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
           IF+ +  FA Y FNKSHAAAYAVI YQTA++  +YPVE +AA +   M   EK+  +   
Sbjct: 764 IFDQMMDFASYAFNKSHAAAYAVIGYQTAYLMKYYPVETIAAMLNSVMGTSEKVAHYINF 823

Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLED 867
           A    IQ++PP +N     F V  ++I + LAAIK VG      I+E+  +K  F+SL D
Sbjct: 824 AESLGIQVLPPDINESYSKFTVKGDKIIFGLAAIKNVGYNVVETIVESRNNKGEFESLMD 883

Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
           F +++D   +N+R +ESL+ AGALDCF   R +LL   + +        K   +   ++F
Sbjct: 884 FINKIDLSSVNKRAIESLIKAGALDCFDVFRSKLLAVYEKLMDSVSSERKRNIDGQISLF 943

Query: 928 AHEKGTFSDKI---TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
             E+     +I    +++F+ +N       E+ + G Y SGHPLD Y   L+
Sbjct: 944 GMEEEIELPEINYPNIKEFAKKNI---LAMEKEMTGLYLSGHPLDEYADSLK 992


>gi|228954873|ref|ZP_04116893.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            kurstaki str. T03a001]
 gi|228804862|gb|EEM51461.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            kurstaki str. T03a001]
          Length = 1105

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1032 (36%), Positives = 611/1032 (59%), Gaps = 61/1032 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+I
Sbjct: 1    MHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVI 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   I
Sbjct: 61   GLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H  
Sbjct: 106  PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAI 163

Query: 192  YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  
Sbjct: 164  QDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223

Query: 251  D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKEE 307
            D +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     E  DI    
Sbjct: 224  DQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY--- 280

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     GL  R  +    K  H +    RLD ELNVI+RM FS YFLIV DF+++A
Sbjct: 281  ---LRRVCEEGLRKRYGE---PKEVHIK----RLDHELNVISRMGFSDYFLIVWDFMKYA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RR
Sbjct: 331  HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRR 390

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +
Sbjct: 391  DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448

Query: 488  SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V + 
Sbjct: 449  TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D
Sbjct: 508  QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQD 567

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K
Sbjct: 568  EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +
Sbjct: 628  HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +
Sbjct: 688  DQERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +
Sbjct: 748  EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+
Sbjct: 808  GMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSI 867

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961
                +YA               A + G   D +   K+ V+   + F      E+ VLGF
Sbjct: 868  KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLGF 910

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF 
Sbjct: 911  YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITFC 969

Query: 1022 EPAKEYEANFFP 1033
            +   E EA  FP
Sbjct: 970  DQNDEMEAVLFP 981


>gi|256004510|ref|ZP_05429489.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360]
 gi|255991515|gb|EEU01618.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360]
 gi|316940028|gb|ADU74062.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 1313]
          Length = 1181

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/1076 (36%), Positives = 622/1076 (57%), Gaps = 78/1076 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA  + +++ +       +IAITD   ++  ++F ++A   GI+PI
Sbjct: 5    FVHLHVHTEYSLLDGANRIKDLIRRTKELGMDSIAITDHGVMYGVVDFYKEAVNNGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +GC+  I      +   QG   + + P  +VLL     GY+ L+++VS +   +      
Sbjct: 65   LGCE--IYTAKGSRFDKQGG--WDSDPGHMVLLAKNNTGYKNLMKIVS-IGFTEGFYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+ +  L++  +EGLI ++   SG I +A   N+ + A++  L    +FG D  Y+ LQ 
Sbjct: 120  RVDMEVLEKY-SEGLIAMSACLSGDIPKAILNNNYEKAKELALKLNSIFGQDNFYLELQM 178

Query: 189  HRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            + G +       Q+++L+    +PLVATN++ +L  ED  AH++L+ +     ++ +DR 
Sbjct: 179  N-GIEEQNIVNQQLIKLSRETGIPLVATNDAHYLRREDARAHEILLCIQTGKSINDEDRM 237

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R + D  Y+K+  EM+S+F ++PEA+ NTV IA  C+  L+ +   LP+F   +  D  K
Sbjct: 238  RFSSDDFYIKSPEEMISLFRNIPEAISNTVRIADMCNVELEFNKLHLPKF---DVPD-GK 293

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +    LR     G E R+      K    ++   RL++EL+VI +M +  YFLIV+DFI+
Sbjct: 294  DPFEYLRALCYEGFE-RI----YGKDNRDEEKINRLEYELSVIKQMGYVDYFLIVSDFIR 348

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK+  I VGPGRGS AGS  AY L IT+IDPL+++LLFERFLNP+R+SMPD DIDFC +
Sbjct: 349  YAKEKGIMVGPGRGSAAGSFVAYCLGITNIDPLKYNLLFERFLNPERISMPDIDIDFCFE 408

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV  KYG +RVAQIITFG++ A+A +RDVGRAL + Y +VD + K+IP     
Sbjct: 409  RRQEVIDYVVEKYGKDRVAQIITFGTMAARAVIRDVGRALDISYGEVDAIAKMIPFQIGM 468

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+  +   R+    D  V  L++ ++ LEG+ RHASTHAAG+VI   PL++ VP+
Sbjct: 469  SIE-KAMELNPELRQRYNDDERVKELIDTAKLLEGMPRHASTHAAGVVISREPLTEYVPL 527

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
             R    D   TQF M  +E+ GL+K DFLGL+TLT+++ ++  + +   + V +  +  D
Sbjct: 528  QRS--EDSITTQFPMGILEELGLLKMDFLGLRTLTVIRDAVALIKKNHNIDVKIDELQMD 585

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D   + L+    T G+FQLES+GM Q ++ +QP  +EDIIA +SLYRPGP+D I  Y   
Sbjct: 586  DPNVFKLIGEGRTAGVFQLESAGMTQFMKELQPASLEDIIAGISLYRPGPMDQIPRYLRN 645

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            KN  E +   HPL++ +L  T G ++YQEQVMQI + L+GYS+  +D++RRAM KK    
Sbjct: 646  KNNPELVKYDHPLLENILNVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMAKKKVSI 705

Query: 725  MDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            M+++++ FI             GA +NG+ +  A  IF+ +  FA Y FNKSHAAAYAVI
Sbjct: 706  MEQERKNFIYGIDDDNGNIIVKGAVRNGVDEETANKIFDEMMDFASYAFNKSHAAAYAVI 765

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTAW+K +YPVEF+AA +   M + +KI ++  + R+  I+++PP +N   V F V +
Sbjct: 766  AYQTAWLKCYYPVEFIAALLNSFMGSSDKISQYVHECRKLGIEVLPPDINESDVRFTVVN 825

Query: 833  NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             +I + LAA+K VG    R I+ E + +  + S  +F  RVD K +N+R +ESL+ +GA 
Sbjct: 826  GKIRFGLAAVKNVGENAVRSIIDERNINGNYKSFRNFLERVDGKDVNKRCIESLIKSGAF 885

Query: 892  DCFGYSRMQLLQSLDNIQK------------------YAQWVEKNRTNKHENIFAHEKGT 933
            D  G  R +L+ + + + +                   A   E  + ++   ++  ++  
Sbjct: 886  DSMGVYRSRLMNAYEKMMEGISSQRKKSMEGQLSIFDMALNTEDGKKDEKHQLYPEDEDI 945

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK-------PILRKMGIKGYEES 986
            + D   + ++S     +    E+ +LG Y SGHPL  ++        +  K  +   +E+
Sbjct: 946  YPD---IPEYS---QKILLSMEKEMLGLYISGHPLSEFEKEFSEVVTLYSKDMVSDADEN 999

Query: 987  --VATIRGN-------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              V T+ GN        + +  ++ S++ K T+  + + +VT  +     E   FP
Sbjct: 1000 GEVITVEGNKGLKDGMTVTVGGIITSRKTKTTKNNNLMAFVTLEDLYGTMEIIVFP 1055


>gi|218899758|ref|YP_002448169.1| DNA polymerase III, alpha subunit [Bacillus cereus G9842]
 gi|218545476|gb|ACK97870.1| DNA polymerase III, alpha subunit [Bacillus cereus G9842]
          Length = 1108

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/1033 (36%), Positives = 611/1033 (59%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306
             D +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     E  DI   
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     GL  R        G   + + +RL+ ELNVI+RM FS YFLIV DF+++
Sbjct: 284  ----LRRVCEEGLRKRY-------GAPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEERKKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            +    +YA               A + G   D +   K+ V+   + F      E+  LG
Sbjct: 870  IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|205355560|ref|ZP_03222331.1| DNA polymerase III alpha chain [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205346794|gb|EDZ33426.1| DNA polymerase III alpha chain [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 1200

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1001 (39%), Positives = 591/1001 (59%), Gaps = 55/1001 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4   FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  +   D L      +  F     + L      GYQ L+ L S+ Y+  +G     
Sbjct: 64  IGMEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180
                L E  +EGLI  +    G +        +R   F +   + A++  L +KK+F D
Sbjct: 117 RINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y  + RH  G  R  +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
           ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 296 --IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDFE 344
               K+ + I  EE  E    N  +        GLE RL    I +  H ++Y+QRL+ E
Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLK--FIDESKH-EEYKQRLEVE 353

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523
             M     D L KL+P +    ++L A  + + + +E     P    + E ++ LEGL R
Sbjct: 474 CDMSIQDADELAKLVPEEL--KITLDAAYEKEPKIKEFIDRHPKGLEVWEYARALEGLNR 531

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581
           +A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT+
Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591

Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           +  ++  + +R  K +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  
Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
           EDIIA+++LYRPGP+++ ++  + +RK+G + I      ++ +L+ T GVI+YQEQVMQI
Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKNIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA 
Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRVKAEDLWELIVKFAG 771

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++P
Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831

Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
           PS+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D 
Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T 
Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTS 951

Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             ++      E+F V     +   E+ +LG Y SGHPLD +
Sbjct: 952 GVQVNFTPKNEEFEVME---KLGYEKEILGIYVSGHPLDRF 989


>gi|160931723|ref|ZP_02079117.1| hypothetical protein CLOLEP_00555 [Clostridium leptum DSM 753]
 gi|156869368|gb|EDO62740.1| hypothetical protein CLOLEP_00555 [Clostridium leptum DSM 753]
          Length = 1203

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/1049 (37%), Positives = 586/1049 (55%), Gaps = 45/1049 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL+GA  +N ++D   +    ++AITD  +++  ++F + A A GI P
Sbjct: 51   GFVHLHLHTEYSLLDGACRINELIDTAVSQGAASVAITDHGSMYGVVDFYKAAKAKGIHP 110

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +   K T++          +VLL     GYQ L  +VS  ++   G  + 
Sbjct: 111  IIGCEVYVSPR---KHTDKIHEFDSENRHLVLLCKNNTGYQNLAAMVSEAWI--NGFYNK 165

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
                  + E  +EGLI L+   +G I RA        A+++ L + ++FG    Y+ LQ 
Sbjct: 166  PRVDDEMLETRSEGLIALSACLAGDIPRALVRGDYDAAKEKALKYNRIFGQGNFYLELQD 225

Query: 189  HRGYDRYRESQVVQLAYTHE--LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H G    ++   + +A + E  +PLV TN+  ++ +ED + H VL+ +  +  +   +  
Sbjct: 226  H-GIREQKQIAPMLIALSQETGIPLVVTNDCHYIHKEDSKMHQVLLCIQTNHTLEDDNNL 284

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                D  Y K   EM S+F  +PEA +NTV+IA  C+   +     LP F   E  D Q 
Sbjct: 285  EFGSDEFYFKTEEEMRSLFPQVPEACDNTVKIAEMCNVEFEFGNTKLPHF---EVPDGQD 341

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E   RN+   G E      A          R+RL++ELN I  M +  Y+LIV DFI+
Sbjct: 342  HFEY-FRNQCYEGFEKYYGTNA------DPSVRERLEYELNTIKTMGYVDYYLIVHDFIR 394

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK   IPVGPGRGSGAGS+ AY + IT IDP++++LLFERFLNP+R+SMPDFDIDFC +
Sbjct: 395  YAKSVGIPVGPGRGSGAGSIAAYCIGITGIDPIKYNLLFERFLNPERVSMPDFDIDFCYE 454

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV  KYG + VAQIITFG++ A+ A+RDVGRA+ MPY+ VD + KL+P +   
Sbjct: 455  RRQEVIDYVVRKYGADHVAQIITFGTMAARGAIRDVGRAMAMPYAAVDVIAKLVPMELG- 513

Query: 486  PVSLQAIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             ++L+     S   +AR  ADP    L+++++K+EG+ R ASTHAAG+VI ++P+S  VP
Sbjct: 514  -ITLERALKVSPELKARYDADPQTRELIDMARKVEGMPRQASTHAAGVVITEQPVSFYVP 572

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            + ++  +D  VTQ+ M  +E+ GL+K DFLGL+TLT+L  +   + ++     ++ +P D
Sbjct: 573  LAKN--NDAVVTQYTMTTLEELGLLKMDFLGLRTLTVLSDAEKMVRRKEPDFSIAHVPDD 630

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D   Y +L    T G+FQ ES GM+  L  + P  +ED+IA++SLYRPGP+D+I  Y   
Sbjct: 631  DPAVYRMLAEGSTNGVFQYESGGMKNVLVQLGPQSLEDLIAVISLYRPGPMDSIPKYIEN 690

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++  E++  +HPL+  +L  T G I+YQEQVMQI + L+GYSL  AD++RRAM KK    
Sbjct: 691  RHHPERVTYLHPLLAGILDVTYGCIVYQEQVMQIFRTLAGYSLGRADIVRRAMSKKKHSV 750

Query: 725  MDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            M+K+++ FI             G  + G+S+ IA  IF  +  FA Y FNKSHA AYA +
Sbjct: 751  MEKERKIFIEGLVGGDGTVEVEGCIRRGVSREIAEKIFAEMESFASYAFNKSHATAYAWV 810

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQTA+MK HYP EF+AA +T  +DN  K+  + ++     IQ++PP+VN     F V  
Sbjct: 811  SYQTAYMKYHYPKEFMAALLTSVLDNANKVAGYIEECSNMGIQVLPPNVNESGNGFTVTH 870

Query: 833  NRIYYSLAAIKGVGTT-TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I + L AI+ +G    AR + E      + S   FC R+  +++NRR LESL+ +GAL
Sbjct: 871  GSIRFGLLAIRNLGRGFIARLLEEREQGGKYTSFYQFCKRLHGREMNRRTLESLIKSGAL 930

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D  G +R Q+L   + +       +K   +     F        D+I         +S  
Sbjct: 931  DGLGANRRQMLAVAETVLDNLDAEKKQNLDGQIGFFEAMGQAPRDEIAFPDVEEFPASEL 990

Query: 952  FENEQRVLGFYFSGHPL-----DVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVSK 1004
               E+ + G Y SGHP+        K    K+G   + + E      G N+ L  ++ S 
Sbjct: 991  LSMEKEITGMYLSGHPMAAYAQAAAKLNAAKIGEIAEAHGEYDRYHDGTNVTLLCIINSV 1050

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + K T+  S + +V   +     E   FP
Sbjct: 1051 RLKTTKNNSTMAFVQIEDLYGGIEMLVFP 1079


>gi|228941783|ref|ZP_04104330.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            berliner ATCC 10792]
 gi|228974708|ref|ZP_04135274.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            thuringiensis str. T01001]
 gi|228981302|ref|ZP_04141602.1| DNA polymerase III subunit alpha [Bacillus thuringiensis Bt407]
 gi|228778502|gb|EEM26769.1| DNA polymerase III subunit alpha [Bacillus thuringiensis Bt407]
 gi|228785111|gb|EEM33124.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            thuringiensis str. T01001]
 gi|228817995|gb|EEM64073.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            berliner ATCC 10792]
 gi|326942388|gb|AEA18284.1| DNA polymerase III DnaE [Bacillus thuringiensis serovar chinensis
            CT-43]
          Length = 1108

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/1033 (36%), Positives = 611/1033 (59%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--IEKECDDIQKE 306
             D +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     E  DI   
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTMKIAERCQVEIPFHVNQLPKFPVSSNETSDIY-- 283

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     GL  R        G   + + +RL+ ELNVI+RM FS YFLIV DF+++
Sbjct: 284  ----LRRVCEEGLRKRY-------GAPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEEREKKMFEDLFEFCLRLPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            +    +YA               A + G   D +   K+ V+   + F      E+  LG
Sbjct: 870  IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAM-RYKKKVQRAIVYITSVRVIRTKKFQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|262066954|ref|ZP_06026566.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
           33693]
 gi|291379302|gb|EFE86820.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
           33693]
          Length = 1133

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/990 (38%), Positives = 593/990 (59%), Gaps = 45/990 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +FVHL +H+ YSLLEG  S++N L K       ++A+TD  N+F A+EF +KA   GI+P
Sbjct: 4   NFVHLNLHTEYSLLEGVNSIDNFLVKAKELGMNSLAVTDYANMFCAIEFYEKAKKMGIKP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIG +L +  ++              + ++ LL    EGY+ L++L S +Y   +  + +
Sbjct: 64  IIGLELPLYEKEE-----------QNIFTLTLLAKDYEGYKNLVKLASELYK-KKDNREL 111

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLFG-DRLYVNLQ 187
           RI    L+E   +GLI L+    G I +A   N  S+  +  +  + ++F  +  Y+ +Q
Sbjct: 112 RISKEILKE-HNKGLIALSSSMKGEIGKAILMNFPSEKLDSIVDEYIEIFSKENFYLEIQ 170

Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            +    ++    +   L    +L LVATNN  ++  + YE  D+++ +     +  K+R 
Sbjct: 171 ANELPENKVINDKFYDLVKEKKLELVATNNVHYVDRDGYELQDIVICIQSGWKLKDKNRK 230

Query: 247 R-VTPDHYLKNRSEMV-SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
           R V+ + YLK++ EM  S+     +A+ENT  IA  C+  ++      P +   E  +  
Sbjct: 231 RAVSKELYLKSKEEMQRSLDEKFHKAIENTNYIASLCNLEIEFGNLQFPYY---EVPNQY 287

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              +  L  KA+    ++     I K    +D  +RL++EL+VI +M +SGYF++V DFI
Sbjct: 288 SGMDEYL--KAICYENIK----KIYKENLTKDILERLEYELSVIIKMGYSGYFIVVWDFI 341

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +AK+N IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD DID C+
Sbjct: 342 AYAKRNGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICR 401

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           +RRDE+I YV +KYG ERVA IITFG ++A+AA+RD+GR L +   ++DRL KL+ +   
Sbjct: 402 ERRDELIDYVVHKYGRERVAHIITFGRMKARAAIRDIGRVLDIDLKKIDRLSKLVSSFQT 461

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +L+   + ++       D  + +++++S ++E   RH STHAAGI+I    L + VP
Sbjct: 462 LEKTLKENVEVAKL---YTTDIELQKVIDLSIRIENKVRHVSTHAAGILITKEDLDRTVP 518

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
           +Y D +  +  TQ+ MK +E  GL+K DFLGLK L+ +Q+++D++ + + + ++L  IP 
Sbjct: 519 IYLDEKEGVIATQYQMKELEDLGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDIELYKIPL 578

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
           DD + + +L+   + G+FQLES G+R+ ++ ++P+ +EDI+AL++LYRPGP+ + +V  +
Sbjct: 579 DDKKVFEMLSQGDSTGVFQLESPGIRKIMKRLKPNKLEDIVALLALYRPGPLQSGMVDDF 638

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRAMGKK 
Sbjct: 639 INRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMANYSLGEADLLRRAMGKKN 698

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              M + +E+FI  A +N  ++  A  IFEL+ KFA YGFNKSH+ AYA+ISY TA++K 
Sbjct: 699 FAIMRENREKFIQRAVENNYTEEKADEIFELIDKFAGYGFNKSHSVAYAMISYWTAYLKA 758

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           HYP  + AA MT E+     +  +  DA++  I I PP+VNTP   F++ ++ I YSLAA
Sbjct: 759 HYPAFYFAAIMTSEISETGDVAYYFNDAKEHRISIYPPNVNTPSAYFEIKNDGISYSLAA 818

Query: 842 IKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
           IK +G   A+ I+E       +  L++F  R     +N+R LE+L+ +GALD    +R +
Sbjct: 819 IKNIGLNLAKKIVEDYEKHGTYTKLDEFMIRNKKNGMNKRALEALILSGALDELEGNRKE 878

Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS-----SVRFENE 955
              S+D +  +     K    +  N+F    G  S   T+ KF++ NS       +   E
Sbjct: 879 KFLSIDKVLDFVSKAPKTDEIQQMNLF----GAASK--TINKFALTNSDDFNLDEKMTKE 932

Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
           +  LGFY S HPLD Y+ I+    I    E
Sbjct: 933 KEFLGFYLSSHPLDKYRDIVTAFSINKLSE 962


>gi|149181134|ref|ZP_01859634.1| DNA polymerase III subunit alpha [Bacillus sp. SG-1]
 gi|148851221|gb|EDL65371.1| DNA polymerase III subunit alpha [Bacillus sp. SG-1]
          Length = 1081

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1002 (39%), Positives = 597/1002 (59%), Gaps = 55/1002 (5%)

Query: 44   IAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
            +AITD N ++  + F Q+     I+PIIG   D+       M+ + +  FP    +VLL 
Sbjct: 1    MAITDRNVMYGVIPFYQECRKNNIKPIIGMTADV-------MSEREERSFP----LVLLA 49

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
                GYQ L+++ S +      K    I   WL+  G EGLI +T G  G I++      
Sbjct: 50   KNNAGYQNLLKISSVI----GTKSPEGIPYKWLKGYG-EGLIGITPGGKGEIEQHLLAGD 104

Query: 164  SQVAEKRLLTFKKLFGDR-LYVNLQRHRGY--DRYRESQVVQLAYTHELPLVATNNSLFL 220
               AE  +   +++FG+   +++LQ H G   DR  E  + +L     +  V TN+  F+
Sbjct: 105  INQAEDVVHRMQQVFGEESFFLSLQNH-GLEDDRKIEDGIEKLKQKLSIRQVVTNDVQFV 163

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIAR 279
             +ED  AH+ L+A+     ++  DR  +  D +Y K+R EM+ +F    +ALENT+++A 
Sbjct: 164  EKEDAFAHECLLAIRDGVKLADDDREILPNDQYYFKSRDEMLDLFGSHVDALENTMKVAN 223

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
            +C+  +  +  +LP++     +    E +  L    + GL+ R  +       +  DY  
Sbjct: 224  QCNVEIAFNQNLLPKYPLPAGE----EADQYLHGVCMQGLKERGLE-------NIPDYLD 272

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL++EL VI +M FS YFLIV DF+++AK  +I  GPGRGS AGS+ AYAL ITD+DP++
Sbjct: 273  RLEYELTVIQKMNFSDYFLIVWDFMKYAKDQHILTGPGRGSAAGSLVAYALRITDVDPIK 332

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              LLFERFLNP+R+SMPD DIDF   RR+EVI YV  KYG   VAQIITFG+L AKAALR
Sbjct: 333  HGLLFERFLNPERISMPDIDIDFPDYRREEVIEYVHKKYGDLHVAQIITFGTLAAKAALR 392

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR-FREARLADPSVDRLLEISQKL 518
            D  R       ++++L K IP+ P    SL+++ D+S  FR          RL + + KL
Sbjct: 393  DTARVFGFNSKELEQLSKFIPSRPG---SLKSVYDESADFRNFINESQHKQRLFQTALKL 449

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL RHASTHAAG++I +RPL  L+P+ +  + ++ +TQ+ M+ +E+ GL+K DFLGL+ 
Sbjct: 450  EGLPRHASTHAAGVIISERPLVDLIPI-QAGQGNVHLTQYPMEILEEIGLLKMDFLGLRN 508

Query: 579  LTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT+L + +  + +  G ++ L  +P +D +T+ LL+   T G+FQLES GM+  L  ++P
Sbjct: 509  LTILDRIVASIRKGTGKRLSLDDLPQNDEKTFDLLSQGRTDGVFQLESDGMKNVLVKLRP 568

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
            +  EDI+A+ +L+RPGP++NI ++ +RK+G+E I   HP +  +L  T GVI+YQEQ+MQ
Sbjct: 569  NSFEDIVAVNALFRPGPMENIPLFISRKHGEETIEYPHPDLKEILGVTYGVIVYQEQIMQ 628

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IA  ++G+SL EAD+LRRA+ KK +E +D +++ FI GA   G S   A  I++L+ +FA
Sbjct: 629  IASKMAGFSLGEADLLRRAVSKKKREVLDSERKHFIDGALNKGYSFETAQEIYDLIVRFA 688

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            +YGFN+SHA AY++I+YQ A++K +YP  FLAA +T  + N  K+ ++ ++A+Q +I I+
Sbjct: 689  NYGFNRSHAVAYSMIAYQLAYLKANYPSYFLAALLTSVIGNDTKVSQYIREAKQNDINIL 748

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            PPS+N     FKV    I YSL A++GVG    + I +   +KPF  L DFC RV  K +
Sbjct: 749  PPSINLSQFPFKVEKGGIRYSLGAVRGVGAAALKEIYQERQEKPFVDLFDFCLRVSLKAV 808

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN-----KHENIFAHEKG 932
            NR+ LE+LVF+GALD FG  R  LL SLD   ++++ V     +     + E  F   K 
Sbjct: 809  NRKTLEALVFSGALDDFGVDRSTLLASLDVALEHSELVRPQDQDYDLFQEEEAFFLKPKY 868

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
            T  + + LEK        + E E++VLG Y S HP+  ++ + + +      +  A   G
Sbjct: 869  TEVEDMPLEK--------KLEYEKQVLGLYLSDHPVSPFESLFKNVSAIDLFDLEA---G 917

Query: 993  N-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            N NIR+   + + +  +T+KG  + ++T S+ + E E   FP
Sbjct: 918  NKNIRVGVYLTAVKTIRTKKGEVMAFITMSDSSGEMEGVIFP 959


>gi|86149829|ref|ZP_01068058.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88596922|ref|ZP_01100158.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218562357|ref|YP_002344136.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|14194692|sp|Q9PPI9|DPO3A_CAMJE RecName: Full=DNA polymerase III subunit alpha
 gi|85839647|gb|EAQ56907.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190611|gb|EAQ94584.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360063|emb|CAL34855.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|284925974|gb|ADC28326.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315930589|gb|EFV09621.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 1200

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/1001 (38%), Positives = 589/1001 (58%), Gaps = 55/1001 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4   FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  +   D L      +  F     + L      GYQ L+ L S+ Y+  +G     
Sbjct: 64  IGIEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180
                L E  +EGLI  +    G +        +R   F +   + A++  L +KK+F D
Sbjct: 117 RINKKLLEDYSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y  + RH  G  R  +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
           ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 296 --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
               K+ + I  EE  E                GLE RL    I +  H ++Y+QRL+ E
Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLEERLK--FIDESKH-EEYKQRLEVE 353

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523
             M     D L KL+P +    ++L A  + + + +E     P    + E ++ LEGL R
Sbjct: 474 CDMSIQDADELAKLVPEEL--KITLDAAYEKEPKIKEFIDRHPKGLEVWEYARALEGLNR 531

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581
           +A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT+
Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591

Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           +  ++  + +R  K +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  
Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
           EDIIA+++LYRPGP+++ ++  + +RK+G + I      ++ +L+ T GVI+YQEQVMQI
Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA 
Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAG 771

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++P
Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831

Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
           PS+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D 
Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T 
Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTS 951

Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             ++      E+F V     +   E+ +LG Y SGHPLD +
Sbjct: 952 GVQVNFTPKNEEFEVME---KLGYEKEILGIYVSGHPLDRF 989


>gi|206895524|ref|YP_002247456.1| DNA polymerase III subunit alpha [Coprothermobacter proteolyticus DSM
            5265]
 gi|206738141|gb|ACI17219.1| DNA polymerase III subunit alpha [Coprothermobacter proteolyticus DSM
            5265]
          Length = 1128

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/1040 (39%), Positives = 601/1040 (57%), Gaps = 68/1040 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS+YSLL+G      ++ +      PAIAITD    +  +EF  +A   GI+PI
Sbjct: 5    FVHLHVHSAYSLLDGVTLPKKLVQRAKDLGMPAIAITDHGVTYGLVEFVSEAQRLGIKPI 64

Query: 71   IGCQLDIDMQDNLKMT-NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +G +     +D  K   N+ K PF     +VLLV  A G++ L  L+++ YL  +G    
Sbjct: 65   VGVEGYQAQRDRKKREGNKDKEPF----HLVLLVKNALGFRNLNILLTKAYL--EGFY-Y 117

Query: 130  RICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187
            R    W L E   EGLI  +   +G I RA      + A +    ++ +FG    Y+ + 
Sbjct: 118  RPRFDWELLEQYHEGLIASSACLAGAIPRALLEGDEKKALELAGRYQDIFGKGNFYLEIM 177

Query: 188  RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   D+ R ++ +V+L+    +PL+ TN+  +   E+Y   DVLMA+A    ++  +R 
Sbjct: 178  DHNLADQQRVNKAIVELSKRTGIPLLVTNDVHYGRPEEYSIQDVLMAIATGATLNDPNRF 237

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +   D  YLK+  EM   FS+ PEAL N++ IA    F+L +    LP+F   E      
Sbjct: 238  KYETDQMYLKSADEMWERFSETPEALLNSLAIAEMVDFMLPLGEQHLPKFSVPEG----Y 293

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             E + LR         +L Q  + K Y    +++   R+++EL+VI +M F+GYFLIV D
Sbjct: 294  TENSYLR---------KLTQDGLLKRYGDNPSKEVLDRMEYELSVIEKMGFAGYFLIVQD 344

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I WAK   IPVGPGRGS AGS+ AY   ITD+DPL++ LLFERFLNP+R+SMPD D+DF
Sbjct: 345  YINWAKSQGIPVGPGRGSAAGSLVAYLTGITDVDPLQYGLLFERFLNPERISMPDIDVDF 404

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C  RRDEV+RYV+NKYG E VAQI TFG+L A+AA+RDVGR L +P + VDRL K IP +
Sbjct: 405  CARRRDEVLRYVRNKYGEENVAQIATFGTLAARAAIRDVGRVLGVPLALVDRLSKSIPQN 464

Query: 483  P--AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
               AH   L    DD +   ++  +P + R+LEI++++EGL RHASTHAAG+VI D+PL 
Sbjct: 465  MELAHAEKL----DDVKNLISQ--NPDLARVLEIAKQVEGLPRHASTHAAGVVIADKPLY 518

Query: 541  QLVPMY--RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVD 597
            + V +    D       TQ     +EK GL+K DFLGL+ +T++  +L ++ +R G+ VD
Sbjct: 519  EYVALQASSDEAGINVTTQLAKDDVEKLGLLKMDFLGLRNMTVISDALRWIKERYGIDVD 578

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +  DD + Y +L+   T+ +FQLESSG R  L+ ++P   E+IIA  +LYRPG + +
Sbjct: 579  LNKLSKDDSKVYEMLSAGETVAVFQLESSGFRSFLKDLKPTRFEEIIAAEALYRPGTLGS 638

Query: 658  --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              +  Y +RK+G+E +   H  + P+L+ET G+I+YQEQ+MQIA +++GYSL EADVLRR
Sbjct: 639  GGVKSYVDRKHGREPVDYFHDDLKPILEETYGIIVYQEQIMQIASVIAGYSLGEADVLRR 698

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            A+ KK +EE+ K +E F+S   + G ++     I+E +  FA+YGFNKSH+AAYA ++Y 
Sbjct: 699  AISKKKEEEILKLREDFVSRGVQRGYARETVEKIYETIVHFAEYGFNKSHSAAYAHVTYY 758

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNR 834
            TAW+K++YP E+ AA +   +DN EK+K +  +AR+  I+I+PP VN     F   G+N 
Sbjct: 759  TAWLKSYYPTEYFAALLASFVDNTEKLKVYISEARRLGIKILPPDVNKSEHYFIPEGENE 818

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L  IK VG      I++  A   PF S +DF  RV+ + +N++V ESL+ AGA D 
Sbjct: 819  IRFGLLGIKNVGLAAVEEILKTRATGGPFSSFQDFLLRVNDRVVNKKVTESLIRAGAFDS 878

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
             G  R  LL+ L              T          + T +D ++L+           E
Sbjct: 879  LG-DRKSLLRQLS-------------TGITTQTLFQIEDTSNDDLSLDP---------ME 915

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            +E+  LG Y + HPL+ Y  IL    +    +SV  I G  +++   V S + +K+R  +
Sbjct: 916  DEREYLGLYITTHPLERYMAILSNQNLTAL-DSVGEIDG-LVQVGGFVSSTRVRKSRNNN 973

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
            +    T  +   + E    P
Sbjct: 974  QYMTFTLEDLTSQVEVTVLP 993


>gi|86151776|ref|ZP_01069990.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85841405|gb|EAQ58653.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp.
           jejuni 260.94]
          Length = 1200

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/1001 (38%), Positives = 590/1001 (58%), Gaps = 55/1001 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F  ++F Q   A G++PI
Sbjct: 4   FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGVIDFYQTMKAQGLKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  +   D L      +  F     + L      GYQ L+ L S+ Y+  +G     
Sbjct: 64  IGMEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180
                L E  +EGLI  +    G +        +R   F +   + A++  L +KK+F D
Sbjct: 117 RINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y  + RH  G  R  +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
           ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLDLNLGNPTPPNFKFT 296

Query: 296 --IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDFE 344
               K+ + I  EE  E    N  +        GLE RL    I +  H ++Y+QRL+ E
Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLK--FIDESKH-EEYKQRLEVE 353

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523
             M     D L KL+P +    ++L A  + + + +E     P    + E ++ LEGL R
Sbjct: 474 CDMSIQDADELAKLVPEEL--KITLDAAYEKEPKIKEFIDRHPKGPEVWEYARALEGLNR 531

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581
           +A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT+
Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591

Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           +  ++  + +R  K +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  
Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
           EDIIA+++LYRPGP+++ ++  + +RK+G + I      ++ +L+ T GVI+YQEQVMQI
Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA 
Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAG 771

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++P
Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831

Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
           PS+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D 
Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T 
Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTS 951

Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             ++      E+F V     +   E+ +LG Y SGHPLD +
Sbjct: 952 GVQVNFTPKNEEFEVME---KLGYEKEILGIYVSGHPLDRF 989


>gi|292670795|ref|ZP_06604221.1| DNA-directed DNA polymerase III alpha subunit [Selenomonas noxia ATCC
            43541]
 gi|292647416|gb|EFF65388.1| DNA-directed DNA polymerase III alpha subunit [Selenomonas noxia ATCC
            43541]
          Length = 1130

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1040 (37%), Positives = 610/1040 (58%), Gaps = 42/1040 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+GA  +  ++ +       ++A+TD   ++ A+ F ++A A GI P
Sbjct: 2    AFAHLHVHTEYSLLDGASRIKELVRRTKELGMDSVAMTDHGVMYGAVRFYKEAKAQGIHP 61

Query: 70   IIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +IGC++ +     Q+  ++  Q          ++LL     GY+ L++LVS +  ++   
Sbjct: 62   VIGCEVYLAPRMRQERAEVDGQ------RYYHLILLAENELGYRNLVQLVS-LANIEGYY 114

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVN 185
               RI    L+    EG+I L+   +G I +A    + + A++ +  +  +FG    ++ 
Sbjct: 115  YKPRIDKELLRRY-HEGIIALSACVAGEIPQAILRGNIEQADEIVREYIDIFGHANFFLE 173

Query: 186  LQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H   +    +  ++ LA  H + LVATN+  ++  +D E HD+L+ V     ++  D
Sbjct: 174  IQDHGLPEEKTVNHALRDLAEKHGVRLVATNDVHYVHADDSEFHDILLCVQTGRTINDPD 233

Query: 245  RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKEC 300
            R R + PD+YLK+  EM  +F+D P ALENTV+IA RC       ++  P  P     E 
Sbjct: 234  RMRFSGPDYYLKSEQEMAELFADYPGALENTVKIAERCQVDFTFGELQLPYYPMPKGYES 293

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            DD+       LR      L +R             + RQRLD+EL VI  M ++ YFLIV
Sbjct: 294  DDVY------LRALCEERLPLRYPDAD-------DEIRQRLDYELGVIHNMGYASYFLIV 340

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI +A+++ + VGPGRGS AGS+ AY L IT+IDPL+++LLFERFLNP+R+SMPD DI
Sbjct: 341  WDFINYAREHGVAVGPGRGSAAGSIVAYLLGITNIDPLQYALLFERFLNPERVSMPDIDI 400

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF    R  VI YV+ +YG + VAQI TFG++ AK A+RDV R L+MP+S+V  + KLIP
Sbjct: 401  DFDDINRGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVARVLEMPFSEVSTITKLIP 460

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +    +  +A+ + + FR+    D +  R++++++K+EGL R+ S HAAG+VI   PL+
Sbjct: 461  AELNITLD-RALQESTDFRKRYEEDEAARRVIDLARKIEGLPRNTSIHAAGVVIAKSPLA 519

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
              VP++  V     VT+F+   +E  GL+K DFLGL+TLT++  +++ + +  GV++D+ 
Sbjct: 520  DQVPVW--VSEGTLVTEFDKDDVEALGLLKMDFLGLRTLTIIADTVNHVRRSHGVELDID 577

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP +D +T  +L    T  +FQ+ES+GM   ++ +QP    D+I  V+LYRPGP+ + +
Sbjct: 578  QIPLEDAQTAKMLCNGDTGAVFQMESAGMTNLVKDLQPKGFVDLIPTVALYRPGPLGSGM 637

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            V  + +  +GK+++V +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAM
Sbjct: 638  VTDFIDGLHGKKEVVYMHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADILRRAM 697

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  E +  QKE F+ G  KNGI  ++A  IF+LL  FADYGFNKSH+AAY ++++QTA
Sbjct: 698  GKKKHELLMAQKEIFLQGCEKNGIEASLANRIFDLLTHFADYGFNKSHSAAYGLLAWQTA 757

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYPVEF+A  +T  MD  +KI  + Q  RQ  I+I+PP +N+    F +    I +
Sbjct: 758  YLKAHYPVEFMAGVLTSIMDKTDKIPVYIQLCRQMKIKILPPDINSSVATFGIEGGAIRF 817

Query: 838  SLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAA++ VG      +    A+   F SL DFC+RVD + LN+R +ESL+  GA D  G 
Sbjct: 818  GLAAVRNVGENAIASMERVRAEGGKFRSLVDFCARVDMRTLNKRAIESLIKCGAFDSIGM 877

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENE 955
             R QLL +LD   + A   +++  +    +F  +      +I +        +  R   E
Sbjct: 878  ERNQLLAALDAAMQDAARRQRDLISGQIGLFGQDTMEEVQQIQISSDVPPSTTRERLTWE 937

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGS 1013
            +   GFY +GHPLD Y   L  +   G  +   TIR +   +R+  ++ + ++  T+KG 
Sbjct: 938  KEATGFYITGHPLDDYSDTLACLLPIG--DIPGTIRKDRQLVRIGGILTNTKRFTTKKGD 995

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             + +    +     E   FP
Sbjct: 996  TMLFAELEDFTGRIEVTIFP 1015


>gi|153956157|ref|YP_001396922.1| DNA polymerase III DnaE [Clostridium kluyveri DSM 555]
 gi|219856482|ref|YP_002473604.1| hypothetical protein CKR_3139 [Clostridium kluyveri NBRC 12016]
 gi|146349015|gb|EDK35551.1| DnaE [Clostridium kluyveri DSM 555]
 gi|219570206|dbj|BAH08190.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1158

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/996 (38%), Positives = 590/996 (59%), Gaps = 54/996 (5%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           +K   +V L  H+ YSLL+ +  ++ ++ +    +  +IAITD  +++  +EF ++A A 
Sbjct: 3   DKKYKWVSLHQHTEYSLLDSSAKISELIARAKELEMDSIAITDHGSMYGCVEFYKEAKAQ 62

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           GI+PIIGC++ +  +      N G+        +VLLV   EGY+ L+++VS   + +  
Sbjct: 63  GIKPIIGCEIYVSQKSMYVKQNNGEN---GNYHLVLLVKNKEGYKNLMKIVSTASI-EGF 118

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
               R+   +L+E  +EGLI L+   SG +      ++ + A++  L ++K+F +  Y+ 
Sbjct: 119 YYKPRVDHDYLRE-HSEGLIALSACMSGEVQANILKDNIKTAKEIALFYQKIFKEGFYLE 177

Query: 186 LQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           LQ H   ++ + +Q ++ ++    +PLVATN+  ++ +EDY +HDVL+ +     V ++ 
Sbjct: 178 LQYHGIEEQLKINQELISMSKELNIPLVATNDVHYIRKEDYRSHDVLLCIQTGKTVDEEQ 237

Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
           R R   D  YLK+  +M  +FS +PEALENTV+IA +CSF  + H   LP+F  KE  D 
Sbjct: 238 RMRYPSDEFYLKSPEQMYEMFSHVPEALENTVKIADQCSFDYEFHNSKLPKFPLKEGID- 296

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E   EL  K +      +    I           RL++EL++I +M +  YFLIV DF
Sbjct: 297 PYEYMKELCYKGLKKRYKNIDDNLI----------NRLEYELDIIKKMGYVDYFLIVWDF 346

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           I +A +N I  GPGRGSGAGS+ AY L IT +DP++++L+FERFLNP+R+SMPD D DFC
Sbjct: 347 ISFAVQNGIMTGPGRGSGAGSIVAYTLGITKVDPIKYNLIFERFLNPERISMPDIDSDFC 406

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            +RR EVI YV  KYG   V+QI+TFG++ A+A +RDVGRA+  PY +VDR+ K+IP   
Sbjct: 407 YERRGEVIDYVVGKYGKNNVSQIVTFGTMAARACIRDVGRAMNYPYGEVDRIAKMIPTIL 466

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              +  +A+  +   + A   +     L+++++ LEGL RH STHAAG+VI  +PL   V
Sbjct: 467 NITID-KALEINPELKGAYEEELRTKELIDVARALEGLPRHTSTHAAGVVIASKPLVNYV 525

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
           P+ ++  +   VTQF M  +E+ GL+K DFLGL+TLT+L+ +L  + + +G  +DL  I 
Sbjct: 526 PLQKNEGN--IVTQFTMNTLEELGLLKMDFLGLRTLTVLRDALTMIKENKGKSIDLDNID 583

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
           +DD   Y ++    T+G+FQLES GM   ++ ++PD +EDIIA +SLYRPGPI  I  Y 
Sbjct: 584 YDDKAVYDMIGQGKTVGVFQLESPGMTSFMKELKPDSLEDIIAGISLYRPGPIAEIPKYI 643

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             KN   +I  + P ++ +L  T G ++YQEQVMQI + L+GYS+  +D++RRAM KK  
Sbjct: 644 KNKNSVHEINYVTPQLEHILSVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKH 703

Query: 723 EEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             M++++  FI             G  +NGIS+  A +IF+ +  FA Y FNKSHAAAYA
Sbjct: 704 HVMEEERRNFIYGIVDENGKVEVPGCIRNGISEKAANDIFDSMIDFASYAFNKSHAAAYA 763

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
           V+++QTA++  +YP EF AA +     + EK+  + + A+   I+++PPS+N     F V
Sbjct: 764 VVAFQTAYLMHYYPTEFTAAMLNSVKGDSEKVAYYIRFAKGIGIEVLPPSINESYAKFTV 823

Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D RI + L+A+K VG      I+++      F  L DFCS ++ + +N+RV+ESL+ AG
Sbjct: 824 EDGRIRFGLSAVKNVGENIIDSIVKSRLKHGKFKDLVDFCSNIEIQSINKRVVESLIKAG 883

Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE--N 947
           A DCFG  R QL  SL     Y + ++    ++ +NI    KG  S    +E  S+E   
Sbjct: 884 AFDCFGKYRSQL--SL----VYEKIIDSVINSRKKNI----KGQISLFSQIEDSSIEIQY 933

Query: 948 SSVR-------FENEQRVLGFYFSGHPLDVYKPILR 976
            S++          E+ + G Y SGHPLD Y+  L+
Sbjct: 934 PSIKEFMKRDMLSMEKEMTGLYLSGHPLDEYEKTLK 969


>gi|315926833|gb|EFV06207.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 1088

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/1001 (38%), Positives = 589/1001 (58%), Gaps = 55/1001 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4   FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  +   D L      +  F     + L      GYQ L+ L S+ Y+  +G     
Sbjct: 64  IGIEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180
                L E  +EGLI  +    G +        +R   F +   + A++  L +KK+F D
Sbjct: 117 RINKKLLEDYSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y  + RH  G  R  +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
           ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 296 --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
               K+ + I  EE  E                GLE RL    I +  H ++Y+QRL+ E
Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLEERLK--FIDESKH-EEYKQRLEVE 353

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523
             M     D L KL+P +    ++L A  + + + +E     P    + E ++ LEGL R
Sbjct: 474 CDMSIQDADELAKLVPEEL--KITLDAAYEKEPKIKEFIDRHPKGLEVWEYARALEGLNR 531

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581
           +A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT+
Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591

Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           +  ++  + +R  K +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  
Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
           EDIIA+++LYRPGP+++ ++  + +RK+G + I      ++ +L+ T GVI+YQEQVMQI
Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA 
Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAG 771

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++P
Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831

Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
           PS+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D 
Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T 
Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTS 951

Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             ++      E+F V     +   E+ +LG Y SGHPLD +
Sbjct: 952 GVQVNFTPKNEEFEVME---KLGYEKEILGIYVSGHPLDRF 989


>gi|124025641|ref|YP_001014757.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str.
            NATL1A]
 gi|123960709|gb|ABM75492.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str.
            NATL1A]
          Length = 1172

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/1062 (37%), Positives = 613/1062 (57%), Gaps = 58/1062 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV +  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +   AA I+P
Sbjct: 2    AFVPIHNHSDYSLLDGASQLPLMVQRAKELGMPALALTDHGVMYGAIELLKLCKAANIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE---GYQRLIELVSRMYLLDQGK 126
            IIG ++ +       +      P P       LV  A+   GY+ L++L +  +L     
Sbjct: 62   IIGNEMYV-------INGSIDDPQPKKEKRYHLVVVAKNQIGYENLVKLTTLSHLNGVRG 114

Query: 127  QSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            + +  R C+  +L +  +EGLI  T    G I +A       VA +    +K++ GD  Y
Sbjct: 115  RGIFSRPCIDKYLFKKYSEGLICSTACLGGEIPQAILKGRIDVAREVAAWYKEVLGDDFY 174

Query: 184  VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H    DR   S++V+++   ++ ++ATN++ +LS+ D EAHD L+ V    ++S 
Sbjct: 175  LEIQDHGSIEDRIVNSEIVKISEELDIKIIATNDAHYLSKNDIEAHDALICVLTGKLISD 234

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296
              R R T   Y+K+  EM S+F+D      +  A+ENTV+++ +      +    +P F 
Sbjct: 235  HKRLRYTGTEYIKSEDEMRSLFTDHLDKNVINSAIENTVKLSNKVEEYKILGTYKMPNF- 293

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ-DYRQRLDFELNVIARMKFSG 355
                D  Q  E   L+   + GL   L    I+K  +    Y++RLD+EL VI +M F  
Sbjct: 294  -PIPDGYQPIE--YLKEITIKGL---LEILDISKFENLPITYKERLDYELKVIEQMGFPT 347

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+V D+I++A++ NIPVGPGRGS AGS+ A++L IT+IDP+   LLFERFLNP+R SM
Sbjct: 348  YFLVVWDYIRFAREQNIPVGPGRGSAAGSLVAFSLHITNIDPVENGLLFERFLNPERKSM 407

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D DFC +RR EVI YV  KYG ++VAQIITF  + +KA L+DV R L +PY   DRL
Sbjct: 408  PDIDTDFCIERRGEVIDYVTKKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRL 467

Query: 476  CKLIPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             KLIP     P  L A+    + +  F E    D  V + ++++ ++EG  +    HAAG
Sbjct: 468  AKLIPVVRGKPAKLAAMISKESPNKDFYEKYNNDSKVKKWVDMAMRIEGTNKTFGVHAAG 527

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI    L  LVP+ R+    + +TQ+ M+ IE  GL+K DFLGL+ LT+++K++D + +
Sbjct: 528  VVIAANSLDNLVPLQRNNDGQI-ITQYFMEDIESLGLLKMDFLGLRNLTMIEKTIDLVEK 586

Query: 592  R-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              G ++D   +PF D +T+ LL+     GIFQLESSGMRQ ++ ++P  +EDI ++++LY
Sbjct: 587  SIGKRLDPDSLPFTDEKTFELLSRGDLEGIFQLESSGMRQIVKDLKPSSLEDISSILALY 646

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+D  ++  + NRK+GKE I   H  ++P+L ET G+++YQEQ+M+IAQ L+GY+L 
Sbjct: 647  RPGPLDAGLIPKFINRKHGKESIDFQHQSLEPILSETYGIMVYQEQIMKIAQDLAGYTLG 706

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            +AD+LRRAMGKK   EM + +  F+ GA KNG++  IA  +F+ +  FA+Y FNKSH+ A
Sbjct: 707  QADLLRRAMGKKKVSEMQRHRTLFVDGAVKNGVTDVIAEQLFDQMVLFAEYCFNKSHSTA 766

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y  ++YQTA++K HYPV ++AA +T+   + +KI+++  +     I +MPP++NT  VDF
Sbjct: 767  YGAVTYQTAYLKAHYPVAYMAALLTVNAGSADKIQRYISNCNSMGINVMPPNINTSGVDF 826

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               DN I +  +A+K +G    R I+ +   D  F SL  FC R+    +NRR LE+L+ 
Sbjct: 827  TPKDNSILFGFSAVKNLGDGAIRKIITSRDEDGQFTSLAQFCDRISLGSVNRRGLEALIH 886

Query: 888  AGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS- 944
            +GALDC     +R QL+  LD   ++A    K+RT+   N+F     T ++    + +S 
Sbjct: 887  SGALDCLEKNANRAQLIADLDLTIEWASSRAKDRTSGQGNLFDLSNSTNNESSPNDDYSS 946

Query: 945  ----------VENSSVRFENEQRVLGFYFSGHPL-DVYKP--ILRKMGIKGYEESVATIR 991
                      + +  ++ E E   +GFY S HPL  + +P  ++  + +   EE      
Sbjct: 947  APKAKEVQEYLPSDKLKLEKEH--VGFYLSDHPLKQLSEPAKLIAPISLSSLEEQKDK-- 1002

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + + + AM+   ++  TRKG R+  +   +     EA  FP
Sbjct: 1003 -SKVSVIAMIPEMREVTTRKGDRMAIIQLEDLTGSCEAVVFP 1043


>gi|229129888|ref|ZP_04258854.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-Cer4]
 gi|228653579|gb|EEL09451.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-Cer4]
          Length = 1105

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/1032 (36%), Positives = 610/1032 (59%), Gaps = 61/1032 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+I
Sbjct: 1    MHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVI 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   I
Sbjct: 61   GLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H  
Sbjct: 106  PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAI 163

Query: 192  YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  
Sbjct: 164  QDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223

Query: 251  D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKEE 307
            D +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     E  DI    
Sbjct: 224  DQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY--- 280

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     GL  R  +    K  H +    RLD ELNVI+RM FS YFLIV DF+++A
Sbjct: 281  ---LRRVCEEGLRKRYGE---PKEVHIK----RLDHELNVISRMGFSDYFLIVWDFMKYA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RR
Sbjct: 331  HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRR 390

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +
Sbjct: 391  DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448

Query: 488  SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V + 
Sbjct: 449  TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D
Sbjct: 508  QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKIGKEIDIRNLPLQD 567

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K
Sbjct: 568  EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +
Sbjct: 628  HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +
Sbjct: 688  DQERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +
Sbjct: 748  EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+
Sbjct: 808  GMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSI 867

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961
                +YA               A + G   D +   K+ V+   + F      E+  LGF
Sbjct: 868  KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALGF 910

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF 
Sbjct: 911  YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITFC 969

Query: 1022 EPAKEYEANFFP 1033
            +   E EA  FP
Sbjct: 970  DQNDEMEAVLFP 981


>gi|167465076|ref|ZP_02330165.1| DNA polymerase III DnaE [Paenibacillus larvae subsp. larvae
            BRL-230010]
          Length = 1218

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/1059 (35%), Positives = 607/1059 (57%), Gaps = 48/1059 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL+GA  ++++ ++ A     A+A+TD   ++  + F +     GI+P
Sbjct: 3    SFVHLHVHSEYSLLDGAARIHDLTERAAELGMSALALTDHGVMYGTIAFYKACKQRGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++        +  N+ + P   +  ++LL     GY+ L++L S  +L +      
Sbjct: 63   IIGCEVYFTTGSIRQKGNRQEQP---IYHLILLAKNNTGYRNLMKLCSIGHL-EGFHYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L    +EGLI L+      + +    +  + A K    ++ +FG+  Y+ +Q H
Sbjct: 119  RIDAEHLA-AHSEGLICLSACLGSEVSQHLLHDRKEDARKAAERYRSIFGEDFYLEIQDH 177

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +    +++L+    +PL+ATN+  ++ E D+E  DVL+ +     V  +DR ++
Sbjct: 178  GMMEQKKVMHSMIELSRETGIPLIATNDVHYVREPDHEVQDVLICIGTGKTVEDEDRLKM 237

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   YLK R  M ++F+ +PEA+ NT ++A +C   +++   ILP F          E 
Sbjct: 238  GTSQLYLKTREAMAALFAHVPEAVLNTEKVAAQCQVEIELGHSILPSFEPIPESLTAAEY 297

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              +L  + ++G      +         +   Q+L +EL+VI  M FS YFLIV DFI++A
Sbjct: 298  LKQLCLEGISGRYGTRQEWNDPSSDFRKQVEQKLYYELDVIESMGFSDYFLIVWDFIRYA 357

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I  GPGRGS AGS+ AYAL ITD+DP+ ++LLFERFLNP+R++MPD DIDF  +RR
Sbjct: 358  HEQGIMTGPGRGSSAGSLVAYALNITDVDPIEYNLLFERFLNPERITMPDIDIDFNDERR 417

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV  KYG ERVAQIITFG++ AKAA+RDVGR L +PY++VD+  KLIPN     +
Sbjct: 418  DEVIDYVVRKYGKERVAQIITFGTMAAKAAVRDVGRVLNLPYNEVDKAAKLIPNHLGMTI 477

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A+  +S  RE     P    LL +++++EG+ RHASTHAAG+VI   PL+  VP+ +
Sbjct: 478  D-HALEVNSDLRELAEKQPKTAELLNMAKRVEGMPRHASTHAAGVVISRDPLTDYVPL-Q 535

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
            +     P+TQ++M+ +E  GL+K DFLGL+TL++++++L ++  Q G  VD +     D 
Sbjct: 536  EGTEQTPLTQYSMEHLESIGLLKIDFLGLRTLSIIERTLAWIKEQEGKLVDWTQTDKSDP 595

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY LL+   T G+FQLES GMR+ L+ ++P   EDII++++LYRPGP++ I  Y   K+
Sbjct: 596  KTYELLSRGETTGVFQLESPGMRRVLKELKPSRFEDIISVLALYRPGPMEFIPQYIACKH 655

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             + + V  HP ++ +LK+T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E +D
Sbjct: 656  KQTEPVYPHPSLETILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREVLD 715

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +Q+  F+ G+   G +   A ++++++ +FADYG+ ++HA AY V+++QTA++K HYP  
Sbjct: 716  EQRSHFVEGSLGQGFTAEEANHVYDMIVRFADYGYPRAHATAYGVLAFQTAYLKAHYPRH 775

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TPCVDFKVG--------- 831
            F+A+ +T    N  K+ ++  + R+  + ++PP +N      TP      G         
Sbjct: 776  FMASMLTAVTGNQRKMAEYVDECRRMKLDVLPPDINESGVLFTPVASPGFGTEPARYAGE 835

Query: 832  ------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                        +  I + LAAIK VG +    +++    + F SL DFC RVD +  N+
Sbjct: 836  PAEEGMADKIPVNGAIRFGLAAIKNVGASAIEAVLKERRKETFTSLLDFCRRVDLRICNK 895

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEKGTF 934
            RV+ESL+ AGA D     R QL+  LD+  + A    K + +   ++F      H +   
Sbjct: 896  RVIESLIQAGAFDTLPGHRAQLVAMLDDTAEAALKWRKEKDDLQLHLFGFVEEPHWEVEV 955

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             D   L K        + + E+ ++G Y SGHPLD ++ +L ++      +       + 
Sbjct: 956  PDVPMLTKLQ------QLDYERELIGMYLSGHPLDAHEDLLGRLEADPLYQLQEYPDHSE 1009

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +A MV S +   T++G  + ++   +   + E   FP
Sbjct: 1010 VVVAGMVASSKTIVTKRGEPMAFMELEDRIAKVEIVLFP 1048


>gi|300866715|ref|ZP_07111399.1| DNA polymerase III subunit alpha (modular protein) [Oscillatoria sp.
            PCC 6506]
 gi|300335315|emb|CBN56559.1| DNA polymerase III subunit alpha (modular protein) [Oscillatoria sp.
            PCC 6506]
          Length = 1257

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/1102 (36%), Positives = 632/1102 (57%), Gaps = 103/1102 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  L  ++D+      PAIA+TD   ++ A+E  +      I P
Sbjct: 2    SFVGLHIHSDYSLLDGASQLPPLIDRAVELGMPAIALTDHGVMYGAIELIKVCRNKNITP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ + +  ++ +  +G+  +  V    +L    +GY+ L++L +  +L    ++ +
Sbjct: 62   IIGNEMYV-VNGDISVKVKGRKKYHQV----VLAKNTQGYKNLVKLTTISHLQGMPERGL 116

Query: 130  --RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              R C++  L E   EGLI+ +G  +G + R     + + A K    +K LFGD  Y+ +
Sbjct: 117  FARPCINKELLEQYHEGLIVTSGCRAGEVPRLIDLGNLEEARKVAKWYKDLFGDDYYLEI 176

Query: 187  QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H  + DR    ++V++     + +VATN+S F +  D EAHD L+ +    +V  + R
Sbjct: 177  QDHGFWEDRIVNIELVKIGKELGIKIVATNDSHFTACSDVEAHDALLCIQTGKLVEDEKR 236

Query: 246  PRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCSFILQVHAPILPRFIEKE 299
             R +   YLK+  EM  +F D LP     EA+ NT+E+A +         P +P +    
Sbjct: 237  MRYSGTEYLKSAEEMAQLFRDHLPDDVIKEAIANTLEVAGKIKKYEIFDEPRIPTY---- 292

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARMK 352
                    E    + A   +E    QG + + + A++       Y++RL++EL +I  M 
Sbjct: 293  --------EIPPDHTADTYVEYVAWQGLLER-FKAKERKEIKPVYKERLEYELKMIQDMG 343

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            FS YFL+V D+I +A++NNIPVGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R
Sbjct: 344  FSTYFLVVWDYIDYARRNNIPVGPGRGSAAGSLVAYAMKITNIDPVHHGLLFERFLNPER 403

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
             SMPD D DFC +RRD++I+YV  KYG ERVAQIITF  L +K+ L+DV R L +PY + 
Sbjct: 404  KSMPDIDTDFCIERRDDMIKYVTEKYGAERVAQIITFNRLTSKSVLKDVARVLGVPYKRA 463

Query: 473  DRLCKLIPNDPAHPVSLQAIADDS----RFREARLADP--------------SVDRLLEI 514
            D + KLIP     P  L  +  +      FR+A   +               +V + L++
Sbjct: 464  DEMAKLIPVSRGKPEKLAVMISEQTPAPEFRQAYEEETLQAKNNDGTEEKTIAVRQWLDM 523

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            + ++EG  +    HAAG+VI  +PL ++VP+ R+    + +TQ+ M+ +E  GL+K DFL
Sbjct: 524  AIRIEGTNKTYGVHAAGVVISAQPLDEIVPLQRNNEGAV-ITQYYMEDLESLGLLKMDFL 582

Query: 575  GLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH------------------ETYHLLTTK 615
            GLK LT+LQK+++++ Q R   +D  ++P D                    +TY LL   
Sbjct: 583  GLKNLTMLQKTVEYIKQTRDCDIDPEMLPSDIERKAQEAFVTCKKLPEDVSKTYKLLAKG 642

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS 673
               GIFQLESSGM   ++ ++P C+EDI ++++LYRPGP+D  ++  + +RK+G+E +  
Sbjct: 643  DLEGIFQLESSGMLDVVKKLKPSCLEDISSILALYRPGPLDAGLIPQFIDRKHGRELVEY 702

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
             HPL++P+LKET G + +QEQ+M++AQ L+GYSL +AD+LRRAMGKK  +EM KQ+E FI
Sbjct: 703  DHPLLEPILKETYGTLCFQEQIMRVAQDLAGYSLGQADLLRRAMGKKKADEMQKQRETFI 762

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
             GA+KNG+S+ IA  +FE + +FA+Y FNKSH+ AYA ++YQTA++K +YPVE++AA +T
Sbjct: 763  DGATKNGVSQRIAEKLFEQMLQFAEYCFNKSHSMAYAYVTYQTAYLKANYPVEYMAALLT 822

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-----KVGD---NRIYYSLAAIKGV 845
                + +K++K+  +  +  I+I PP +N   V F     +V D   ++I + ++A+K +
Sbjct: 823  ANSGDQDKVQKYIANCIKMGIEIEPPDINRSKVTFTPLPKQVTDAEIDKILFGMSAVKNL 882

Query: 846  GTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            G +   +I++A  +   F SL DFC RVD K +N R LE+L+  GALD    +R QL+  
Sbjct: 883  GDSAIENILKAREEGGNFKSLADFCERVDLKAVNSRALEALIQCGALDRLNSNRNQLMHD 942

Query: 905  LDNIQKYAQWVEKNRTNKHENIFA------HEKGTFSDKITLEKFSVE-NSSVRFENEQR 957
            LD + K+AQ  +K+R +   N+F        E     D I   K   + +   +   E+ 
Sbjct: 943  LDGVVKWAQDRKKDRESGQGNLFDLLGMSFGETANSYDSIPKHKPVPDFDKQKKLSLEKE 1002

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESV-----ATIRGNN-IRLAAMVVSKQQKKTRK 1011
            +LGFY S HPL   K +L        EE+V     A  +G + ++L  MV + +   T+K
Sbjct: 1003 LLGFYVSDHPL---KSVLLAT---QNEETVTVAQLADKKGKDVVKLIVMVTAIKLVTTKK 1056

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
              R+  +   +   + EA  FP
Sbjct: 1057 NDRMAILQVEDLTGQLEAVVFP 1078


>gi|170756612|ref|YP_001783011.1| DNA polymerase III DnaE [Clostridium botulinum B1 str. Okra]
 gi|169121824|gb|ACA45660.1| DNA polymerase III, alpha subunit [Clostridium botulinum B1 str.
            Okra]
          Length = 1185

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/1076 (35%), Positives = 625/1076 (58%), Gaps = 57/1076 (5%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q+ EK P +V L  H+ YSLL+ +  +++++ +       +IAITD   ++  ++F ++
Sbjct: 4    NQFDEKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKE 63

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   GI+PIIGC++ +    ++ +  Q K        +VLLV    GY+ L+E+VS+  +
Sbjct: 64   AIKQGIKPIIGCEIYV-ASKSMYIKQQDKEN--ETHHLVLLVKNEIGYKNLMEIVSKASV 120

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             +      R+   +L++  +EGLI L+    G +       + + AE+  L +K +F +R
Sbjct: 121  -EGFYYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFKER 178

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ LQ H   ++ + ++ +V+++    +PLVATN+  ++ +EDY++HD+L+ +     V
Sbjct: 179  FYLELQYHGMEEQLKVNETLVKMSKDLYIPLVATNDVHYIRKEDYKSHDILLCIQTGKTV 238

Query: 241  SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEK 298
             +++R R   D  YLK+  EM   FS +PEALENTV+I+  C+F    H   LP+F +E+
Sbjct: 239  EEENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEE 298

Query: 299  ECDDIQKEEENELRNKAVAGLEVR--LAQGAIAKGY-------------HAQDYRQRLDF 343
              D  +      LR     GL +R  + +  I K +              A D  +RL++
Sbjct: 299  GVDPYEY-----LREICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNY 353

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL++I +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+
Sbjct: 354  ELSIIKQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLI 413

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNPDR+SMPD D DFC +RR EVI YV  KYG E V+QIITFG++ A+A +RDVGR
Sbjct: 414  FERFLNPDRISMPDIDSDFCYERRGEVIDYVVEKYGKENVSQIITFGTMAARACIRDVGR 473

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            A+  PY++VDR+ K+IP      ++ +A+  +   +E    +  V  L+++++ LEGL R
Sbjct: 474  AMNYPYAEVDRIAKMIPTVLNITIN-KALELNPELKEVYDNEERVRELIDVARALEGLPR 532

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
            H STHAAG+VI  +PL   VP+ ++  S   VTQF M  +E+ GL+K DFLGL+TLT+++
Sbjct: 533  HTSTHAAGVVIASQPLVNYVPLQKNEES--IVTQFTMGTLEELGLLKMDFLGLRTLTVMR 590

Query: 584  KSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             ++  + + + + +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +ED
Sbjct: 591  DAVRIIKENKEINIDLDNIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLED 650

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            IIA +SLYRPGP+  I  Y   KN    I      ++P+L  T   I+YQEQVMQI + L
Sbjct: 651  IIAGISLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDL 710

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFI--------SGASKNGISKTIAVNIFELLA 754
            +GYS+  +D++RRAM KK  + M++++  FI         G   NGI + +A ++F+ + 
Sbjct: 711  AGYSMGRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMM 770

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNKSHAAAYAV+ +QTA++  +YP EF+AA +     + +K+  +   A+   I
Sbjct: 771  DFASYAFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGI 830

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873
            +I+ P++N    +F V DNRI + L A+K VG     +I+ +   K  F  L DF ++VD
Sbjct: 831  EIIAPNINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVD 890

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +  +N+R++ESL+ AGA DC    R ++L   + I    Q  ++N      N+F      
Sbjct: 891  TSIINKRLVESLIKAGAFDCLKIYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDN 950

Query: 934  FSDKITLEKFSVENSSVRF--ENEQRVLGFYFSGHPLDVYKPILR------------KMG 979
                I ++  +++    ++  + E+ + G YFSGHPL+ Y+  L+            K  
Sbjct: 951  KESSIDIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKES 1010

Query: 980  IKG-YEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++G   +++++I+ G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1011 LEGNLVDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|307720929|ref|YP_003892069.1| DNA polymerase III subunit alpha [Sulfurimonas autotrophica DSM
            16294]
 gi|306979022|gb|ADN09057.1| DNA polymerase III, alpha subunit [Sulfurimonas autotrophica DSM
            16294]
          Length = 1204

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/1083 (36%), Positives = 625/1083 (57%), Gaps = 84/1083 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K PSF HL +H+ YSLL+GA  L+N++ ++      ++A+TD  N+F A++F ++   
Sbjct: 1    MSKQPSFTHLHLHTEYSLLDGANKLSNLVSRVKELGMTSVAMTDHGNMFGAIDFYKQMKG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG +  I   + L     G         I L     +GY+ L+ L S+ ++  +
Sbjct: 61   AGLKPIIGMEGYIHNGETL-----GDKSTKQRFHICLYAKNKKGYENLMYLSSKAFI--E 113

Query: 125  GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL----------T 173
            G     RI    L+E  +EGLI  +    G ++      + +  +   L           
Sbjct: 114  GFYYFPRINKKELRE-HSEGLICTSACLQGEVNWHLNLQNERNVKNGALGYEGALNVARE 172

Query: 174  FKKLFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            ++ +FG+  Y+ L RH  G   Y + Q+++++    + +VATN++ +   +D + H+  M
Sbjct: 173  YQDIFGNDFYLELMRHGIGDQLYIDEQILKISRETGIKIVATNDTHYTYPDDAQYHEAFM 232

Query: 233  AVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAP 290
             +  + +    +R R +  + Y+K+  EM  +F+D+PEALE+T EI  +   F+  V  P
Sbjct: 233  CIGMNKLYDDPNRMRHSVHEFYIKSPDEMARLFADIPEALEHTQEITNKIEDFVPIVKTP 292

Query: 291  ILPRF-----IEKE-------------CDDIQKEEENELRN------------KAVAGLE 320
              P F       KE              DD  +EE+ +  +            K   GLE
Sbjct: 293  TPPNFKFTQEYAKEEGLDIDYQDDPPLADDASEEEKKKWLSAADKNDAEYFIIKCREGLE 352

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
             RL    + K  H Q+YR RL+FE+++I  MKF GY +IV DF++ AK+  + VGPGRGS
Sbjct: 353  KRLK--IVPKERH-QEYRDRLEFEMDIINSMKFPGYMMIVWDFVKEAKRIGVAVGPGRGS 409

Query: 381  GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
             AGS+ AY+L ITDIDP+++ LLFERFLNP+R+SMPD D+DF Q RR EVI YV  KYG 
Sbjct: 410  AAGSLVAYSLEITDIDPMKYDLLFERFLNPERVSMPDIDMDFMQARRGEVIDYVTKKYGR 469

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ---------A 491
             +VAQIITFGSL AK  +RDV R L MP S+ D++ KL+P++    ++ +         A
Sbjct: 470  NQVAQIITFGSLLAKGVIRDVARVLDMPLSKADQMAKLVPDELGITLNGKTKNGEFKDGA 529

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + + RE   +DP V R+ E ++KLEGL R+A  HAAG+VI +  L +  P+Y+    
Sbjct: 530  FQKEPKLRELVESDPQVGRVWEFAKKLEGLKRNAGMHAAGVVISNEELWKKTPIYKPSGE 589

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYH 610
            D  VTQ+++ ++E   LIKFDFLGLKTL ++  ++  + +R  K +D   I  +D   Y 
Sbjct: 590  DTFVTQYSLNYMEDVDLIKFDFLGLKTLDVIDNAIKLIKRRYDKDIDWHTIDENDKNVYD 649

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGK 668
            ++ T  T+G+FQ+ESSGM+   + ++P   ED+IA+++LYRPGP+++ ++  +  RK+G+
Sbjct: 650  VIQTGETVGMFQIESSGMQDLNKRLKPSNFEDLIAVLALYRPGPMESGMLDDFIERKHGR 709

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            ++I  +   ++ +LK T GVI+YQEQVMQI Q + G+SL  AD++RRAMGKK  +EM K 
Sbjct: 710  QEITYVFEALEEILKPTYGVIVYQEQVMQIVQTIGGFSLGGADIVRRAMGKKKVDEMLKY 769

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
             + F  GA+K G+    A  +F+L+ KFA YGFNKSH+AAYA++++QTAW+KT+YP EF+
Sbjct: 770  NKEFSEGAAKQGLDYKTASELFDLIEKFAGYGFNKSHSAAYAMVTFQTAWLKTYYPNEFM 829

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK--VGDNR--IYYSLAAIKG 844
            AA +T + DN EK+ ++  + ++  I++ PP +    ++F     +NR  I + L  IKG
Sbjct: 830  AALLTSDKDNTEKVVRYIDEVKRMGIELSPPDICDSYLEFSAITKENREIILFGLGGIKG 889

Query: 845  VGTTTARHIM--EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            VG   A H M  E   +  + SL+DF +R++  K+N+RV+E+++ +G  D +GYSR  LL
Sbjct: 890  VG-EAAIHAMIEEREENGDYASLQDFVNRIEPSKVNKRVVEAIIKSGGFDRYGYSRKALL 948

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR-----FENEQR 957
              ++ I   A+   + + N   ++F  +     ++IT  +  ++NS         E E+ 
Sbjct: 949  DQIELIVDTAKKASEAKKNVVGSLFGDD-----EEITTVRLELKNSDEYELKEILEFEKD 1003

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             LGFY SGHP+D ++  L ++      E  +   G+       V   Q+K ++KG++ G 
Sbjct: 1004 TLGFYVSGHPMDDFREELDELNYTLSSELESIKDGSFAIFIGKVEEIQKKISKKGNQFGI 1063

Query: 1018 VTF 1020
            V  
Sbjct: 1064 VNL 1066


>gi|229152799|ref|ZP_04280982.1| DNA polymerase III subunit alpha [Bacillus cereus m1550]
 gi|228630619|gb|EEK87265.1| DNA polymerase III subunit alpha [Bacillus cereus m1550]
          Length = 1105

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1032 (36%), Positives = 610/1032 (59%), Gaps = 61/1032 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+I
Sbjct: 1    MHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVI 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   I
Sbjct: 61   GLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H  
Sbjct: 106  PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAI 163

Query: 192  YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  
Sbjct: 164  QDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223

Query: 251  D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKEE 307
            D +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     E  DI    
Sbjct: 224  DQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY--- 280

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     GL  R  +    K  H +    RLD ELNVI+RM FS YFLIV DF+++A
Sbjct: 281  ---LRRVCEEGLRKRYGE---PKEVHIK----RLDHELNVISRMGFSDYFLIVWDFMKYA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RR
Sbjct: 331  HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRR 390

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +
Sbjct: 391  DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448

Query: 488  SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V + 
Sbjct: 449  TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D
Sbjct: 508  QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQD 567

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K
Sbjct: 568  EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +
Sbjct: 628  HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D++++ FI G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +
Sbjct: 688  DQERKHFIQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +
Sbjct: 748  EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+
Sbjct: 808  GMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSI 867

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961
                +YA               A + G   D +   K+ V+   + F      E+  LGF
Sbjct: 868  KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALGF 910

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF 
Sbjct: 911  YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITFC 969

Query: 1022 EPAKEYEANFFP 1033
            +   E EA  FP
Sbjct: 970  DQNDEMEAVLFP 981


>gi|295697007|ref|YP_003590245.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
 gi|295412609|gb|ADG07101.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
          Length = 991

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/963 (38%), Positives = 581/963 (60%), Gaps = 54/963 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +HL VHS+YSLL G      ++ +  AD  P +AITD  NL++A+ F + A  AGI+PI+
Sbjct: 1   MHLHVHSAYSLLRGVCRPEALIQRAVADGMPGVAITDWANLYAAIRFVRLAKEAGIRPIL 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G Q+ + ++++++  ++G  P     ++VLL  + +G++ LI LVS   L   G +   +
Sbjct: 61  GAQIPL-VEESVQRPSRGDPP-----AVVLLAESEKGFRGLIRLVS---LAHDGPE---L 108

Query: 132 CLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +SW        GL +L+GG+ GP+D A     ++ A   L  F ++FG +R ++ +Q  
Sbjct: 109 GVSWEAVTAHAPGLFLLSGGAEGPVDAALARGDTERARDWLRRFVEVFGPNRAWLEVQDD 168

Query: 190 RGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            G +R R S  ++V L   + L  VAT +  ++  ED     V+ A+      +    P 
Sbjct: 169 -GSERGRLSHYRLVSLGEEYGLLPVATADVHYIDPEDAPLARVVQALRQGDDGAPPPSP- 226

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +P  +  + +EM + F+ LP+A+   +EIA RC   L +   +LP F   E +      
Sbjct: 227 -SP-RWFASSAEMRARFAHLPQAVNAALEIAERCRVELPLGRVLLPSFDVPEGES----P 280

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
           +  LR     GL  R+             Y+ RL+ EL+VIARM F+ YFLIV DFI+++
Sbjct: 281 DGYLRRLCQEGLRQRVGDPV------PPSYKDRLEHELSVIARMGFASYFLIVWDFIRYS 334

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           ++N I  GPGRGS AGS+ AYAL IT +DP+R  LLFERFLNP+R+SMPD DIDF  +RR
Sbjct: 335 RENGIATGPGRGSAAGSLVAYALGITGVDPVRHHLLFERFLNPERVSMPDIDIDFEDERR 394

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            EVI YV  KYGH+RVAQIITFG++ A+AA+RD GR   +P + VDR+ KL+P      +
Sbjct: 395 FEVIEYVAQKYGHDRVAQIITFGTMAARAAIRDAGRVTGLPPALVDRVAKLVPASLG--I 452

Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           +L QA+ ++ R R     +  V  LL +++ LEGL RH STHAAG+VI    L+ +VP+ 
Sbjct: 453 TLDQALVEEPRLRALMDENEQVRTLLTVAKGLEGLPRHTSTHAAGVVIAPSALTDVVPVQ 512

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDLSLIPF 603
           R     L +TQ++M  +E  GL+K DFLGL+TL++++ +     +R    V++D     +
Sbjct: 513 RTPEGGL-ITQYDMASLEAVGLLKMDFLGLRTLSIIEHTRQLAGERLGHAVEIDEE---Y 568

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            D +TY LL    T G FQLESSG++  L  +QP+C EDI+A++SLYRPGP++NI  Y +
Sbjct: 569 TDPKTYELLGRGDTDGCFQLESSGVKHVLRDLQPNCFEDIVAVISLYRPGPMENISRYID 628

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            K+G+  +   HP ++P+L++T G+++YQEQ+MQIA  ++G++L +ADVLRRA+GKK +E
Sbjct: 629 AKHGRVPVHYPHPDLEPILRDTYGIVVYQEQIMQIASRMAGFTLGQADVLRRAVGKKKRE 688

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +++Q+  F++G  + G  + +A  +++L+ +FADYGFN+SHA AYAV+S++TA++K HY
Sbjct: 689 VLEQQRAAFVAGCLRQGHPRDLAEELYDLIVRFADYGFNRSHAVAYAVLSWRTAYLKAHY 748

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAI 842
           P EF A+ ++  M + +K+ ++ ++A Q  I+++PPSV T    F V  D +I ++L AI
Sbjct: 749 PAEFFASLLSAAMASADKVAQYVEEAFQRGIEVLPPSVQTSGAGFTVSEDGKIRFALGAI 808

Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
           K VG    + ++ A     F SL DF SRVD +  +RR +E+L+ AGA D  G +R +LL
Sbjct: 809 KHVGQAAVQAVLGARRAGTFRSLGDFLSRVDHRACHRRTVEALIRAGAFDELGENRDELL 868

Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             L+                H      +   F ++    + S EN   +  +E+ ++G  
Sbjct: 869 GRLER-------------ESHWGGGGAQLTFFGEESPGRRASSENEQEKIRHEKELMGLT 915

Query: 963 FSG 965
           F+G
Sbjct: 916 FTG 918


>gi|148381315|ref|YP_001255856.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str. ATCC
            3502]
 gi|153930894|ref|YP_001385691.1| DNA polymerase III DnaE [Clostridium botulinum A str. ATCC 19397]
 gi|153935249|ref|YP_001389097.1| DNA polymerase III DnaE [Clostridium botulinum A str. Hall]
 gi|148290799|emb|CAL84933.1| DNA polymerase III alpha subunit [Clostridium botulinum A str. ATCC
            3502]
 gi|152926938|gb|ABS32438.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str. ATCC
            19397]
 gi|152931163|gb|ABS36662.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str. Hall]
          Length = 1185

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/1076 (35%), Positives = 625/1076 (58%), Gaps = 57/1076 (5%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q+ EK P +V L  H+ YSLL+ +  +++++ +       +IAITD   ++  ++F ++
Sbjct: 4    NQFDEKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKE 63

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   GI+PIIGC++ +    ++ +  Q K        +VLLV    GY+ L+E+VS+  +
Sbjct: 64   AIKQGIKPIIGCEIYV-ASKSMYIKQQDKEN--ETHHLVLLVKNEIGYKNLMEIVSKASV 120

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             +      R+   +L++  +EGLI L+    G +       + + AE+  L +K +F + 
Sbjct: 121  -EGFYYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLEKAEEVALIYKDIFKEG 178

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ LQ H   ++ + ++ +V+++   ++PLVATN+  ++ +EDY++HD+L+ +     V
Sbjct: 179  FYLELQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTV 238

Query: 241  SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEK 298
             +++R R   D  YLK+  EM   FS +PEALENTV+I+  C+F    H   LP+F +E+
Sbjct: 239  EEENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEE 298

Query: 299  ECDDIQKEEENELRNKAVAGLEVR--LAQGAIAKGY-------------HAQDYRQRLDF 343
              D  +      LR     GL +R  + +  I K +              A D  +RL++
Sbjct: 299  GVDPYEY-----LREICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNY 353

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL++I +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+
Sbjct: 354  ELSIIQQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLI 413

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNPDR+SMPD D DFC +RR EVI YV  KYG E V+QIITFG++ A+A +RDVGR
Sbjct: 414  FERFLNPDRISMPDIDSDFCYERRGEVIDYVVEKYGKENVSQIITFGTMAARACIRDVGR 473

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            A+  PY++VDR+ K+IP      ++ +A+  +   +E    +  V  L+++++ LEGL R
Sbjct: 474  AMNYPYAEVDRIAKMIPTVLNITIN-KALELNPELKEVYDNEERVRELIDVARALEGLPR 532

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
            H STHAAG+VI  +PL   VP+ R+  S   VTQF M  +E+ GL+K DFLGL+TLT+++
Sbjct: 533  HTSTHAAGVVIASQPLVNYVPLQRNEES--IVTQFTMGTLEELGLLKMDFLGLRTLTVMR 590

Query: 584  KSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             ++  + + + + +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +ED
Sbjct: 591  DAVRIIKENKEINIDLDNIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLED 650

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            IIA +SLYRPGP+  I  Y   KN    I      ++P+L  T   I+YQEQVMQI + L
Sbjct: 651  IIAGISLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDL 710

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFI--------SGASKNGISKTIAVNIFELLA 754
            +GYS+  +D++RRAM KK  + M++++  FI         G   NGI + +A ++F+ + 
Sbjct: 711  AGYSMGRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMM 770

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNKSHAAAYAV+ +QTA++  +YP EF+AA +     + +K+  +   A+   I
Sbjct: 771  DFASYAFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGI 830

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873
            +I+ P++N    +F V DNRI + L A+K VG     +I+ +   K  F  L DF ++VD
Sbjct: 831  EIIAPNINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVD 890

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +  +N+R++ESL+ AGA DC    R ++L   + I    Q  ++N      N+F      
Sbjct: 891  TSIINKRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDN 950

Query: 934  FSDKITLEKFSVENSSVRF--ENEQRVLGFYFSGHPLDVYKPILR------------KMG 979
                I ++  +++    ++  + E+ + G YFSGHPL+ Y+  L+            K  
Sbjct: 951  KESSIDIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKES 1010

Query: 980  IKG-YEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++G   +++++I+ G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1011 LEGNLVDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|229081856|ref|ZP_04214348.1| DNA polymerase III subunit alpha [Bacillus cereus Rock4-2]
 gi|228701444|gb|EEL53938.1| DNA polymerase III subunit alpha [Bacillus cereus Rock4-2]
          Length = 1105

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/1032 (36%), Positives = 611/1032 (59%), Gaps = 61/1032 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+I
Sbjct: 1    MHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVI 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   I
Sbjct: 61   GLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H  
Sbjct: 106  PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAI 163

Query: 192  YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  
Sbjct: 164  QDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223

Query: 251  D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKEE 307
            D +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     E  DI    
Sbjct: 224  DQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY--- 280

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     GL  R  +    K  H +    RLD ELNVI+RM FS YFLIV DF+++A
Sbjct: 281  ---LRRVCEEGLRKRYGE---PKEVHIK----RLDHELNVISRMGFSDYFLIVWDFMKYA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +N+I  GPGRGS AGS+ +Y L ITDI+P+ + LLFERFLNP+R+++PD DIDF   RR
Sbjct: 331  HENHILTGPGRGSAAGSLVSYVLEITDINPIEYDLLFERFLNPERVTLPDIDIDFPDVRR 390

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +
Sbjct: 391  DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448

Query: 488  SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V + 
Sbjct: 449  TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D
Sbjct: 508  QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQD 567

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K
Sbjct: 568  EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +
Sbjct: 628  HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +
Sbjct: 688  DQERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +
Sbjct: 748  EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+
Sbjct: 808  GMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSI 867

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961
                +YA               A + G   D +   K+ V+   + F      E+ VLGF
Sbjct: 868  KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLGF 910

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF 
Sbjct: 911  YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITFC 969

Query: 1022 EPAKEYEANFFP 1033
            +   E EA  FP
Sbjct: 970  DQNDEMEAVLFP 981


>gi|157415005|ref|YP_001482261.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157385969|gb|ABV52284.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747643|gb|ADN90913.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp.
           jejuni M1]
          Length = 1200

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/1001 (38%), Positives = 590/1001 (58%), Gaps = 55/1001 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4   FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  +   D L      +  F     + L      GYQ L+ L S+ Y+  +G     
Sbjct: 64  IGMEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180
                L E  +EGLI  +    G +        +R   F +   + A++  L +KK+F D
Sbjct: 117 RINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y  + RH  G  R  +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
           ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 296 --IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDFE 344
               K+ +    EE  E    N  +        GLE RL    I +  H ++Y+QRL+ E
Sbjct: 297 REYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEERLK--FIDESKH-EEYKQRLEVE 353

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523
             M     D L KL+P +    ++L A  + + + +E     P    + E ++ LEGL R
Sbjct: 474 CDMSIQDADELAKLVPEEL--KITLDAAYEKEPKIKEFIDRHPKGPEVWEYARALEGLNR 531

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581
           +A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT+
Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591

Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           +  ++  + +R  K +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  
Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
           EDIIA+++LYRPGP+++ ++  + +RK+G + I      ++ +L+ T GVI+YQEQVMQI
Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA 
Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAG 771

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++P
Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831

Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
           PS+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D 
Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T 
Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTS 951

Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             ++      E+F V     +   E+ +LG Y SGHPLD +
Sbjct: 952 GVQVNFTPKNEEFEVME---KLGYEKEILGIYVSGHPLDRF 989


>gi|283956127|ref|ZP_06373614.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792447|gb|EFC31229.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 1200

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/1001 (38%), Positives = 591/1001 (59%), Gaps = 55/1001 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4   FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  +   D L      +  F     + L      GYQ L+ L S+ Y+  +G     
Sbjct: 64  IGMEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180
                L E  +EGLI  +    G +        +R   F +   + A++  L +KK+F D
Sbjct: 117 RINKKLLEKYSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181 RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y  + RH   D R  +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177 DFYFEIMRHGISDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
           ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237 LNDPDRIRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 296 --IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDFE 344
               K+ +    EE  E    N  +        GLE RL    I +  H ++Y+QRL+ E
Sbjct: 297 REYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEERLK--FIDESKH-KEYKQRLEVE 353

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523
             M     D L KL+P +    ++L A  + + + +E     P    + E ++ LEGL R
Sbjct: 474 CDMSIQDADELAKLVPEEL--KITLDAAYEKEPKIKEFIDRHPKGPEVWEYARALEGLNR 531

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581
           +A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT+
Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591

Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           +  ++  + +R  K +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  
Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESDGMQSLNARLKPERF 651

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
           EDIIA+++LYRPGP+++ ++  + +RK+G + I      ++ +L+ T GVI+YQEQVMQI
Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA 
Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAG 771

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++P
Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831

Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
           PS+N    +F      G++ I Y L AIK VG     +++EA  D  F  + DF  ++D 
Sbjct: 832 PSINKAIREFSALEQDGNDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T 
Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTS 951

Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             ++      E+F V     +   E+ +LG Y SGHPLD +
Sbjct: 952 GVQVNFTPKNEEFEVME---KLGYEKEILGIYVSGHPLDRF 989


>gi|294794627|ref|ZP_06759763.1| DNA polymerase III, alpha subunit [Veillonella sp. 3_1_44]
 gi|294454957|gb|EFG23330.1| DNA polymerase III, alpha subunit [Veillonella sp. 3_1_44]
          Length = 1135

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/1015 (36%), Positives = 614/1015 (60%), Gaps = 39/1015 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +SLL+G   L +++ +     QPA+AITD  N+++A+ F ++  A G++PI
Sbjct: 4    FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY---LLDQGKQ 127
            IGC++ +          +G++    +  ++LL  T EGY+ L+++VS+     +L + + 
Sbjct: 64   IGCEVYVTEHSRFDRP-EGRSR-ERLKHLILLAETMEGYRNLVKIVSKASTEGMLYRPRA 121

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
               +   +     ++G+I L+    G I +    ++ + A++ +  + + +G D  ++ +
Sbjct: 122  DRDLLRQY-----SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEI 176

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   +  + + ++++L+  + L +VA+N+  ++ +ED +A D+ + ++     ++ DR
Sbjct: 177  QNHGLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDR 236

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             +   D  YLK+  EM  +F  +P A+ENT++IA RC+         LP F      D+ 
Sbjct: 237  LKFPNDEFYLKSGDEMADLFGHIPGAIENTLKIADRCNVEFNFDEHHLPHF------DVP 290

Query: 305  KEEENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            + E ++   + V   E+ RL       G  +++ ++RLD+EL+VI  M F  YFLIV D+
Sbjct: 291  EGETSKTYLRKVCEREIPRLY------GETSEELQKRLDYELDVIGTMGFEDYFLIVWDY 344

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC
Sbjct: 345  VRYAREHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFC 404

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++R + I YV  KYG  RV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+ 
Sbjct: 405  YEKRGQAIEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNEL 464

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++L         +    +D +V  L +  +KLEG+ R++STHAAG+VI   PL   V
Sbjct: 465  G--ITLDKALQGKDLKALYESDSNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHV 522

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
            P+ ++   +  VTQ++   IE+ GL+K DFLGL+TLT++  +L  + A RG+ +DL  IP
Sbjct: 523  PV-QNANDEGFVTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIP 581

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD     LLT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +V  
Sbjct: 582  LDDKAACDLLTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVAD 641

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + +R++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK
Sbjct: 642  FIDRRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKK 701

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             +  +  Q+E FI G+  NGI +++A  +F+LL  FA YGFNKSH+AAYA I+YQTA++K
Sbjct: 702  KESVLKAQRESFIQGSINNGIEESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLK 761

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HY  EF+AA+MT  M N++K+  +    ++ N++++ P +N     F V D+ I + L 
Sbjct: 762  AHYFPEFMAATMTSFMQNMQKLTYYINSCKKHNVKVLGPDINYSERSFAVQDDAIRFGLG 821

Query: 841  AIKGVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK VG     R I E +    +  + DFC RVD++ +N+R+LESL+  GA+D F  +R 
Sbjct: 822  GIKNVGDNAIDRLIRERNEHGLYTDIVDFCKRVDNRVVNKRLLESLIRCGAMDGFQENRN 881

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
            QLL   ++ Q      +K+      ++F    E   F     +E  S ++   + ++E+ 
Sbjct: 882  QLLHMYESAQAVGAKEQKDAAMGTMSLFGDMEEAVEFIPVPNVEDLSEDD---KLKDEKE 938

Query: 958  VLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
              GFY +GHPL  Y   L  +  +    E+     G  I    ++ +K  + T++
Sbjct: 939  YTGFYITGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKSDRMTKR 993


>gi|307692527|ref|ZP_07634764.1| DNA polymerase III DnaE [Ruminococcaceae bacterium D16]
          Length = 1155

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/1058 (36%), Positives = 596/1058 (56%), Gaps = 59/1058 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ +SLL+GA  +  ++ ++    Q A+AITD   ++  ++F +    AGI+P
Sbjct: 2    SFVHLHLHTEFSLLDGACRIQKLVQRVKDLGQEAVAITDHGVMYGVIDFYRACKGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTV-------PSIVLLVSTAEGYQRLIELVSRMYLL 122
            IIGC++ +          +G+T F  V         +VLL    EGY+ L  +VS+ +L 
Sbjct: 62   IIGCEVYV--------APRGRTRFQKVHEYDAAFSHLVLLCRNEEGYRNLSYMVSQGFL- 112

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181
            +      RI L  L+E    GLI L+    G I +         A++  L  ++LFG D 
Sbjct: 113  EGFYIKPRIDLDLLRE-HCGGLIALSACLGGEIPKLLMAGDYDKAKEVALEMRELFGEDG 171

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ LQ H    + + ++ +++L     +PLV TN++ +L  ED E  D+LM +     V
Sbjct: 172  YYLELQDHNIPAQKKVNEGILRLHEETGIPLVCTNDAHYLRREDAEMQDILMCIQMGKTV 231

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                R +  T + Y+K+  EM ++F    EAL+NT +IA+ C+         LP F   +
Sbjct: 232  DDPGRMKFETQEFYVKSEEEMAALFPR--EALDNTAKIAQLCNVDFTFGKYHLPHF---Q 286

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              +   +         + G   R             +YR++LD+E+ +I +M F  YFLI
Sbjct: 287  LPEGWSDGYAYFEKLCLDGFRWRYPD-------EPAEYRKQLDYEMAMIQKMGFVDYFLI 339

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V+DFI +AK + IPVGPGRGS AGS+ +Y L ITD+DP++++L FERFLNP+R++MPD D
Sbjct: 340  VSDFIAYAKGHGIPVGPGRGSAAGSMVSYCLNITDLDPMKYNLYFERFLNPERVTMPDID 399

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC  RR EVI YV  KYG + VAQI+TFG++ A+AA+RDVGR L MPY+ VD + K I
Sbjct: 400  IDFCIRRRQEVIDYVARKYGADHVAQIVTFGTMAARAAVRDVGRVLNMPYADVDVIAKQI 459

Query: 480  PNDPA--HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            P+ P   H    +A+      +E+  +D  V +L++ +  +EG+ R+ STHAAG+VI  R
Sbjct: 460  PSGPGALHITLEEALKLSKPLKESYDSDYKVKKLIDTAMAIEGMPRNTSTHAAGVVITSR 519

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            P+S  VP+ ++   DL VTQ+ M  +E+ GL+K DFLGL+ LT+L  ++  + ++    D
Sbjct: 520  PVSDYVPLAKN--DDLVVTQYIMTTLEELGLLKMDFLGLRNLTVLDDAVKLVRRKEPDFD 577

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP DD  T+ +++   T G+FQ+ESSGM     G++P  IED+ A+V+LYRPGP+++
Sbjct: 578  IHNIPEDDEATFRMISEGRTSGVFQMESSGMTGVCVGLKPHSIEDLTAIVALYRPGPMES 637

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  + + KN  EK+   HP + P+L  T G I+YQEQV+QI Q L GYSL +AD++RRAM
Sbjct: 638  IPRFISCKNNPEKVTYKHPSLVPILSNTYGCIVYQEQVIQIFQQLGGYSLGQADMVRRAM 697

Query: 718  GKKIKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             KK  ++++K++E F        I+G + NGI + +A +I++ +  FA+Y FNK+HA  Y
Sbjct: 698  SKKKVKDIEKERETFLHGDPERNIAGCAANGIPENVAQSIYDEIYDFANYAFNKAHAVCY 757

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+++YQTAW K H+P E++AA +T  +D+ EK+ ++  + ++++IQ++PP VN    +F 
Sbjct: 758  ALVAYQTAWFKCHHPKEYMAALLTSVLDSSEKVAEYIAECKEWDIQLLPPDVNESETNFT 817

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V    I + LAA+KGVG +    ++E      PF    DFC R+    LNRRVLESL+ A
Sbjct: 818  VSPQGIRFGLAALKGVGRSVMNAMLEERVKHGPFTDFMDFCDRMFDHDLNRRVLESLIKA 877

Query: 889  GALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            GA D  G  R QL+    Q LD I    +   + + +         +      + L    
Sbjct: 878  GAFDRMGCRRSQLMQVFGQVLDGIAASRKRNVEGQMDLFGFGGGEGESAPLPTLHLPDIP 937

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG----------IKGYEESVATIRGNN 994
                      E+ V G Y +GHP+D Y+ I RK G            G E       G  
Sbjct: 938  EYTPQELMTMEKEVTGLYLTGHPMDAYREIARKRGAVTIGSILNDFDGEEGPQRFRDGER 997

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +A ++ + + + TR  + + +V   +     E   F
Sbjct: 998  VTVAGVIATYKTRTTRNNTLMAYVNLEDDTASMELLCF 1035


>gi|237739930|ref|ZP_04570411.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
 gi|229421947|gb|EEO36994.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
          Length = 1133

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/989 (38%), Positives = 595/989 (60%), Gaps = 63/989 (6%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +FVHL +H+ YSLLEG  S+++ L +       ++A+TD  N+F A+EF +KA   GI+P
Sbjct: 4   NFVHLNLHTEYSLLEGVNSIDSFLTRAKELGMNSLAVTDYANMFCAIEFYEKAKKMGIKP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQS 128
           IIG +L +  ++              + ++ LL    EGY+ L++L S +Y   D G+  
Sbjct: 64  IIGLELPLYEKEE-----------QNIFTLTLLAKDYEGYKNLVKLASELYKKKDNGE-- 110

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLFG-DRLYVNL 186
           +RI    L+E  ++GLI L+    G I +A   N  S+  +  +  + ++F  +  Y+ +
Sbjct: 111 LRISKGILKEY-SKGLIALSSSMKGEIGKAILMNFPSEKLDSIVDEYIEIFSKENFYLEI 169

Query: 187 QRHRGYDRYRESQVVQ-----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           Q     +   E++V+      LA    + LVATNN  ++  + YE  D+++ +     + 
Sbjct: 170 QA----NELPETKVINDKFYDLAKLKNIELVATNNVHYVDRDGYELQDIVICIQSGWKLK 225

Query: 242 QKDRPR-VTPDHYLKNRSEMV-SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            K+R R V+ + YLK++ EM  S+     +A+ENT  IA  C+  ++      P +    
Sbjct: 226 DKNRKRAVSKELYLKSKEEMQRSLDERFHKAIENTNYIASLCNLEIEFGNLQFPYY---- 281

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQ------GAIAKGYHAQDYRQRLDFELNVIARMKF 353
                     E+ N+  +G++  L          I K    +D  +RL++EL+VI +M +
Sbjct: 282 ----------EVPNQ-YSGMDEYLKSICYENIKKIYKENLTKDILERLEYELSVIIKMGY 330

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
           SGYF++V DFI +AK+N IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+
Sbjct: 331 SGYFIVVWDFIAYAKRNGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERI 390

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
           SMPD DID C++RRDE+I YV +KYG ERVA IITFG ++A+AA+RD+GR L +   ++D
Sbjct: 391 SMPDIDIDICRERRDELIDYVVHKYGRERVAHIITFGRMKARAAIRDIGRVLDIDLKKID 450

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
           RL KL+ +      +L+   + ++       D  + +++++S ++E   RH STHAAGI+
Sbjct: 451 RLSKLVSSFQTLEKTLKENVEVAKL---YTTDIELQKVIDLSIRIENKIRHVSTHAAGIL 507

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
           I    L + VP+Y D +  +  TQ+ MK +E  GL+K DFLGLK L+ +Q+++D++ + +
Sbjct: 508 ITKEDLDRTVPIYLDEKEGVIATQYQMKELEDLGLLKIDFLGLKNLSNIQRTIDYIKKYK 567

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            + ++L  IP DD + + +L+   + G+FQLES+G+R+ ++ ++P+ +EDI+AL++LYRP
Sbjct: 568 NIDIELYKIPLDDKKVFEMLSQGDSTGVFQLESTGIRKIMKRLKPNKLEDIVALLALYRP 627

Query: 653 GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           GP+ + +V  + NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EA
Sbjct: 628 GPLQSGMVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMANYSLGEA 687

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
           D+LRRAMGKK    M + +E+FI  A +N  ++  A  IFEL+ KFA YGFNKSH+ AYA
Sbjct: 688 DLLRRAMGKKNFTIMRENREKFIQRAVENNYTEEKADEIFELIDKFAGYGFNKSHSVAYA 747

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
           +ISY TA++K HYP  + AA MT E+     +  +  DA++  I I PP+VNTP   F++
Sbjct: 748 MISYWTAYLKAHYPAFYFAAIMTSEISETGDVAYYFNDAKEHRISIYPPNVNTPSAYFEI 807

Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            ++ I YSLAAIK +G   A+ I+E       +  L++F  R     +N+R LE+L+ +G
Sbjct: 808 KNDGISYSLAAIKNLGLNLAKKIVEDYEKYGAYTKLDEFVLRNKKNGMNKRALEALILSG 867

Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFSVE 946
           ALD    +R +   S+D +  +     K    +  N+F     T  DK  L   E FS++
Sbjct: 868 ALDELEGNRKEKFLSIDKVLDFVSKAPKTDEIQQMNLFGAASKTI-DKFVLTNSEDFSLD 926

Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
               +   E+  LGFY S HPLD Y+ I+
Sbjct: 927 E---KLTKEKEFLGFYLSSHPLDKYRDIV 952


>gi|229093701|ref|ZP_04224800.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-42]
 gi|228689586|gb|EEL43394.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-42]
          Length = 1108

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/1033 (36%), Positives = 610/1033 (59%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG+  Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGN-FYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPAFINRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F       +   E 
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAGRCRVEIPFHVNQLPKF------PVPSNET 279

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            N+  LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++
Sbjct: 280  NDMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+ G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+LV++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEALVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            L    +YA               A + G   D +   K+ V+   + F      E+ VLG
Sbjct: 870  LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|33862920|ref|NP_894480.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT
            9313]
 gi|33634837|emb|CAE20822.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT
            9313]
          Length = 1171

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/1060 (37%), Positives = 603/1060 (56%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +    A I+P
Sbjct: 2    AFVPLHNHSDYSLLDGATQLPQMVKRAKELGMPALALTDHGVMYGAIELLKLCKNAEIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVP---SIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IIG ++ +       +    + P P       +V+L   A GY+ L++L S  +L     
Sbjct: 62   IIGNEMYV-------INGSIEDPQPKKERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRG 114

Query: 127  QSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            + +  R C+   L +  +EGLI+ T    G I +A       VA      ++++FG   Y
Sbjct: 115  RGIFARPCIDKELLKAYSEGLIVATACLGGEIPQAILRGRIDVARDVARWYQEVFGKDFY 174

Query: 184  VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H    DR    ++V +A    + L+ATN++ +LS+ D EAHD L+ V    ++S 
Sbjct: 175  LEVQDHGSPEDRIVNVEIVNIAKELGIELIATNDAHYLSKNDVEAHDALLCVLTGKLISD 234

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296
            + R R T   Y+K+  EM  +F+D      L +A+ NT  +A +      + +  +PRF 
Sbjct: 235  EKRLRYTGTEYIKSEQEMGRLFADHLEPDVLQKAIANTAAVAEKVEEYSILGSYQMPRFP 294

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSG 355
              E         + L   +  GL  RL    +A      D Y +RL +EL V+ +M F  
Sbjct: 295  IPE----GHSAVSYLHEVSEQGLRQRLK---LATTDPIDDHYGERLTYELGVMEQMGFPT 347

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+V D+I++A++  IPVGPGRGS AGS+ AYAL IT+IDP++  LLFERFLNP+R SM
Sbjct: 348  YFLVVWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVQNGLLFERFLNPERKSM 407

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL
Sbjct: 408  PDIDTDFCIERRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRL 467

Query: 476  CKLIPNDPAHPVSLQA-IADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             KLIP     P  L A I  DS    FRE    DP V + ++++ ++EG  +    HAAG
Sbjct: 468  AKLIPVVRGKPAKLAAMIGSDSPNAEFREKYQNDPVVTKWVDMAMRIEGTNKTFGVHAAG 527

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-A 590
            +VI   PL  LVP+ R+    + +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +  
Sbjct: 528  VVIAAEPLDDLVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEV 586

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              G ++D   +P +D ET+ LL      GIFQLES+GMRQ +  ++P  +EDI ++++LY
Sbjct: 587  SNGERIDPDQLPTEDPETFALLARGDLEGIFQLESTGMRQIVRDLRPSSLEDISSILALY 646

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+D  ++  + NRK+G+E I   H  ++P+LKET G+++YQEQ+M+IAQ L+GYSL 
Sbjct: 647  RPGPLDAGLIPKFINRKHGREAIDFAHAALEPILKETYGIMVYQEQIMKIAQDLAGYSLG 706

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            EAD+LRRAMGKK   EM K +  F+ GAS++G+ + IA  +F+ +  FA+Y FNKSH+ A
Sbjct: 707  EADLLRRAMGKKKVSEMQKHRSIFVEGASRSGVDQKIADELFDQMVLFAEYCFNKSHSTA 766

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y  ++YQTA++K HYPV ++A+ +T+     +K++++  +     I++MPP VN   +DF
Sbjct: 767  YGAVTYQTAYLKAHYPVAYMASLLTVNAGASDKVQRYISNCNAMGIEVMPPDVNASGIDF 826

Query: 829  KVGDNRIYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                +RI + L+A++ +G    R  I     D PF SL D C R+ S  LNRR LESL+ 
Sbjct: 827  TPAGDRILFGLSAVRNLGDGAIRQLIANRDGDGPFVSLADLCDRLPSNVLNRRGLESLIH 886

Query: 888  AGALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
             GALD      +R QL+  L+ +  +A    ++R +   N+F    G  +D+ T ++ S 
Sbjct: 887  CGALDAIDPESNRAQLIADLELLIHWAASRARDRLSGQGNLFDLVAGA-ADEQTSDELST 945

Query: 946  ENSSV---------RFENEQRVLGFYFSGHPL-DVYKP--ILRKMGIKGYEESVATIRGN 993
               +          +   E+ ++GFY S HPL  +  P  +L  +G+   E+     +  
Sbjct: 946  APKAAPVTDYPPTEKLRLEKELVGFYLSDHPLKQLTAPAQLLAPIGLASLEDQPDKAK-- 1003

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + +  M+   +Q  TRKG R+  +   +     EA  FP
Sbjct: 1004 -VSVITMLTEMRQVTTRKGDRMAVLNIEDLTGSCEAVVFP 1042


>gi|222098066|ref|YP_002532123.1| DNA polymerase iii dnae [Bacillus cereus Q1]
 gi|221242124|gb|ACM14834.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
          Length = 1108

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1033 (36%), Positives = 610/1033 (59%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG+  Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFGN-FYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F       +   E 
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPANET 279

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            N+  LR     GL+ R        G   + + +RL+ ELNVI+ M FS YFLIV DF+++
Sbjct: 280  NDMYLRRVCEEGLQKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+ G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  IHP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYIHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            L    +YA               A + G   D +   K+ V+   + F      E+ VLG
Sbjct: 870  LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPTLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|315931919|gb|EFV10874.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 1088

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/1001 (38%), Positives = 590/1001 (58%), Gaps = 55/1001 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4   FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  +   D L      +  F     + L      GYQ L+ L S+ Y+  +G     
Sbjct: 64  IGMEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180
                L E  +EGLI  +    G +        +R   F +   + A++  L +KK+F D
Sbjct: 117 RINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y  + RH  G  R  +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
           ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 296 --IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDFE 344
               K+ +    EE  E    N  +        GLE RL    I +  H ++Y+QRL+ E
Sbjct: 297 REYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEERLK--FIDESKH-EEYKQRLEVE 353

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523
             M     D L KL+P +    ++L A  + + + +E     P    + E ++ LEGL R
Sbjct: 474 CDMSIQDADELAKLVPEELK--ITLDAAYEKEPKIKEFIDRHPKGPEVWEYARALEGLNR 531

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581
           +A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT+
Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591

Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           +  ++  + +R  K +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  
Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
           EDIIA+++LYRPGP+++ ++  + +RK+G + I      ++ +L+ T GVI+YQEQVMQI
Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA 
Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAG 771

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++P
Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831

Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
           PS+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D 
Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T 
Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTS 951

Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             ++      E+F V     +   E+ +LG Y SGHPLD +
Sbjct: 952 GVQVNFTPKNEEFEVME---KLGYEKEILGIYVSGHPLDRF 989


>gi|57237020|ref|YP_178822.1| DNA polymerase III subunit alpha [Campylobacter jejuni RM1221]
 gi|57165824|gb|AAW34603.1| DNA polymerase III, alpha subunit [Campylobacter jejuni RM1221]
 gi|315058181|gb|ADT72510.1| DNA polymerase III alpha subunit [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 1200

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/1001 (38%), Positives = 589/1001 (58%), Gaps = 55/1001 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4   FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  +   D L      +  F     + L      GYQ L+ L S+ Y+  +G     
Sbjct: 64  IGMEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180
                L E  +EGLI  +    G +        +R   F +   + A++  L +KK+F D
Sbjct: 117 RINKKLLEDYSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y  + RH  G  R  +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
           ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 296 --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
               K+ + I  EE  E                GL+ RL    I +  H ++Y+QRL+ E
Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLKERLK--FIDESKH-EEYKQRLEVE 353

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523
             M     D L KL+P +    ++L A  + + + +E     P    + E ++ LEGL R
Sbjct: 474 CDMSIQDADELAKLVPEELK--ITLDAAYEKEPKIKEFIDRHPKGPEVWEYARALEGLNR 531

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581
           +A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT+
Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591

Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           +  ++  + +R  K +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  
Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
           EDIIA+++LYRPGP+++ ++  + +RK+G + I      ++ +L+ T GVI+YQEQVMQI
Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKNIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA 
Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRVKAEDLWELIVKFAG 771

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++P
Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831

Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
           PS+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D 
Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T 
Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTS 951

Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             ++      E+F V     +   E+ +LG Y SGHPLD +
Sbjct: 952 GVQVNFTPKNEEFEVME---KLGYEKEILGIYVSGHPLDRF 989


>gi|47565015|ref|ZP_00236058.1| DNA polymerase III, alpha subunit [Bacillus cereus G9241]
 gi|47557801|gb|EAL16126.1| DNA polymerase III, alpha subunit [Bacillus cereus G9241]
          Length = 1108

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/1033 (36%), Positives = 610/1033 (59%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG + Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFG-KFYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F       +   E 
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPANET 279

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            N+  LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++
Sbjct: 280  NDTYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++ + PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSEEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+ G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            L    +YA               A + G   D +   K+ V+   + F      E+ VLG
Sbjct: 870  LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|301056108|ref|YP_003794319.1| DNA polymerase III subunit alpha [Bacillus anthracis CI]
 gi|300378277|gb|ADK07181.1| DNA polymerase III subunit alpha [Bacillus cereus biovar anthracis
            str. CI]
          Length = 1108

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1033 (36%), Positives = 609/1033 (58%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG+  Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGN-FYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F       +   E 
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNET 279

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            N+  LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++
Sbjct: 280  NDMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+ G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            L    +YA               A + G   D +   K+ V+   + F      E+ VLG
Sbjct: 870  LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|217962084|ref|YP_002340654.1| DNA polymerase III DnaE [Bacillus cereus AH187]
 gi|229141330|ref|ZP_04269868.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST26]
 gi|217066627|gb|ACJ80877.1| DNA polymerase III, alpha subunit [Bacillus cereus AH187]
 gi|228642111|gb|EEK98404.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST26]
          Length = 1108

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/1033 (36%), Positives = 608/1033 (58%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    N    AE+    ++ +FG+  Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLENKESQAEEVARAYQNMFGN-FYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F       +   E 
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNET 279

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            N+  LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++
Sbjct: 280  NDMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+ G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  IHP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYIHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            L    +YA               A + G   D +   K+ V+   + F      E+ VLG
Sbjct: 870  LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPTLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|229124170|ref|ZP_04253362.1| DNA polymerase III subunit alpha [Bacillus cereus 95/8201]
 gi|228659472|gb|EEL15120.1| DNA polymerase III subunit alpha [Bacillus cereus 95/8201]
          Length = 1108

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1033 (36%), Positives = 609/1033 (58%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG+  Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGN-FYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F       +   E 
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNET 279

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            N+  LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++
Sbjct: 280  NDMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+ G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            L    +YA               A + G   D +   K+ V+   + F      E+ VLG
Sbjct: 870  LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|312144146|ref|YP_003995592.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904797|gb|ADQ15238.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
          Length = 1119

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/1025 (36%), Positives = 613/1025 (59%), Gaps = 39/1025 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  H++YSLL+GA+ + +++ K      PA++ITD   L+  +EF Q+A    I+P
Sbjct: 3    NFVHLHNHTAYSLLDGAIRIKDLIRKSKEYSLPAVSITDHGVLYGMIEFYQQAKKENIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L   + +N K++N+ +  +     +VLL    EGY  LI+LV++ +L  +G    
Sbjct: 63   IIGCELY--LAEN-KLSNRNRKNY----HLVLLAENNEGYHNLIQLVTKSWL--EGFYYK 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
                  L    ++GLI L+    G + +     +  +A+K +  ++ +FG D  ++ LQ 
Sbjct: 114  PRVDKELLAKHSDGLICLSACLQGEVPQLILNGNYDLAKKAVSDYQAIFGHDSFFLELQD 173

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    +Q +++L+    +PLV +N+S +L  ED E  D+L+A+   T +  ++R  
Sbjct: 174  HNLKEEKEAAQGLIKLSNEENIPLVVSNDSHYLEREDSELQDILLALQTGTTIDDENRMS 233

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +  ++Y K+ SEM  +F DL  A ENTV+IA R +  L  +   LP +   +  D +  
Sbjct: 234  FSGQEYYYKSPSEMKKLFPDLDSAYENTVKIADRVNLELDFNHFYLPDY--PDLKDNKNP 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFLIVADFI 364
            EE          L  +L + A+ +   A+D +  +RL +EL +I  M ++ YFLIV DF+
Sbjct: 292  EE----------LLEKLCKKALKERGMAEDEKAVERLQYELKIIFEMGYAAYFLIVYDFV 341

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+ N+I VGPGRGS AGS+ AY L IT ++PL++ L+FERFLNP+R++MPD DIDF +
Sbjct: 342  KYAENNDIMVGPGRGSAAGSLVAYLLKITKVNPLKYGLIFERFLNPERVTMPDIDIDFDE 401

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +R D++I YV+++YG +RVAQI TFG++ A+AA+RDVGRAL +PY +VD+  KLI +   
Sbjct: 402  NR-DQIIEYVRDRYGRDRVAQIGTFGTMAARAAVRDVGRALGIPYGKVDKAAKLISSRSG 460

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               SL    ++ + R     D  + ++++ ++ +EG  RH STHAAG++IG  PL+++VP
Sbjct: 461  IEESLN---NNKKLRNLYKEDGQIKKMIDYAKGVEGFPRHISTHAAGVIIGAEPLAEIVP 517

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603
            + +  + +  +TQ  M  +E  GL+K DFLGL+ LT+++ +L+ +  R   K+D++ IPF
Sbjct: 518  LQK--QDENIITQLPMDDLEALGLLKMDFLGLRNLTVIKNTLELIESRKNEKIDINSIPF 575

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD   Y  L+T  T G+FQ+ES   +   + ++P+   D+IA+++L RPGP+ + +V  +
Sbjct: 576  DDKNVYDFLSTGKTAGVFQMESYLFKSLNQRLKPERFNDLIAMLALGRPGPLGSNIVDDF 635

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               ++G+++   +HP +  +L+ET G+I+YQEQVM+IA  L GYS+ EAD+LRR MGKK 
Sbjct: 636  IAIRHGEKEADYLHPKLKAILEETFGMILYQEQVMEIASSLGGYSMGEADLLRRGMGKKK 695

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E +  ++E+F+ GA  NGI+   A  IF+ +  FA YGFNKSH+ AYA ++YQTA++K 
Sbjct: 696  LEIVAAEREKFVQGAVNNGIAAETAEKIFDQMEYFAGYGFNKSHSTAYAFLAYQTAYLKY 755

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLA 840
            +YP EF+AA  +  M N +KI  + + AR+ +++I+ P +N    DFK  GDN+I Y L 
Sbjct: 756  YYPAEFMAALFSSVMGNQDKIADYIKAAREIDLEILAPDINKSYHDFKAEGDNKIRYGLK 815

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIK VG+ T   +  A  +K F S+ DF  R+D   LN +  E+ + AGA D    SR  
Sbjct: 816  AIKNVGSNTIYALENARKEKEFKSVVDFLKRIDMSALNIQSFEAFIKAGAFDDIVESRAA 875

Query: 901  LLQSLDNI-QKYAQWVEKNRTNKHE--NIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            LL + + + QKY     +    +     +F  E     + +  E      +    + E+ 
Sbjct: 876  LLINYEELYQKYNNLSRQRAQGQRSFAELFGEENKFIEEDLKYEDIKELETETILKQEKE 935

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             LG Y S HPLD Y+  + K+ I    +++    G  +  A  ++S ++  T++ +++ +
Sbjct: 936  YLGIYLSAHPLDNYQHKITKLNIANISQAIKASDGEKVFTAGNIISYKEHITKRNNKMAF 995

Query: 1018 VTFSE 1022
            +T S+
Sbjct: 996  LTISD 1000


>gi|206977128|ref|ZP_03238027.1| DNA polymerase III, alpha subunit [Bacillus cereus H3081.97]
 gi|206744613|gb|EDZ56021.1| DNA polymerase III, alpha subunit [Bacillus cereus H3081.97]
          Length = 1108

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/1033 (36%), Positives = 610/1033 (59%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG+  Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFGN-FYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F       +   E 
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPANET 279

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            N+  LR     GL+ R        G   + + +RL+ ELNVI+ M FS YFLIV DF+++
Sbjct: 280  NDMYLRRVCEEGLQKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+ G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            L    +YA               A + G   D +   K+ V+   + F      E+ VLG
Sbjct: 870  LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|196032965|ref|ZP_03100378.1| DNA polymerase III, alpha subunit [Bacillus cereus W]
 gi|196040926|ref|ZP_03108224.1| DNA polymerase III, alpha subunit [Bacillus cereus NVH0597-99]
 gi|218905831|ref|YP_002453665.1| DNA polymerase III, alpha subunit [Bacillus cereus AH820]
 gi|228948329|ref|ZP_04110612.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            monterrey BGSC 4AJ1]
 gi|195994394|gb|EDX58349.1| DNA polymerase III, alpha subunit [Bacillus cereus W]
 gi|196028380|gb|EDX66989.1| DNA polymerase III, alpha subunit [Bacillus cereus NVH0597-99]
 gi|218538695|gb|ACK91093.1| DNA polymerase III, alpha subunit [Bacillus cereus AH820]
 gi|228811316|gb|EEM57654.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            monterrey BGSC 4AJ1]
          Length = 1108

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1033 (36%), Positives = 609/1033 (58%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG+  Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGN-FYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F       +   E 
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNET 279

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            N+  LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++
Sbjct: 280  NDMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+ G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            L    +YA               A + G   D +   K+ V+   + F      E+ VLG
Sbjct: 870  LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|32266769|ref|NP_860801.1| DNA polymerase III subunit alpha [Helicobacter hepaticus ATCC 51449]
 gi|32262821|gb|AAP77867.1| DNA-dependent DNA polymerase III [Helicobacter hepaticus ATCC 51449]
          Length = 1218

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/1086 (37%), Positives = 616/1086 (56%), Gaps = 75/1086 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL +H+ YSLL+GA  +  +  +I      ++AITD  N+F AL+F       G+ P
Sbjct: 2    SFTHLHLHTEYSLLDGANKIKFLAKRIRELGMESVAITDHGNMFGALDFYVSMKEEGLNP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +   D L     G         + L      GY+ L+ L S+ ++ +      
Sbjct: 62   IIGMEAYLHNGDTL-----GDKTIKQRFHLCLFAKNEIGYKNLMYLSSQSFI-EGFYYYP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPID--------RAFFFNSS--QVAEKRLLTFKKLFG 179
            RI  + L+E  +EGL+  +    G I+        R   F +   +VA++  L +K +FG
Sbjct: 116  RINKALLRE-RSEGLVCSSACLQGEINWQLNTSNQRNVRFGAKGYEVAKEVALEYKDIFG 174

Query: 180  DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +  Y+ L RH   D+ + + Q+++L    ++ ++ATN++ +  +ED  A +V M VA   
Sbjct: 175  EDFYLELMRHGINDQLFIDEQILKLGRELDIKVIATNDTHYSLQEDASAQEVAMCVAMGK 234

Query: 239  VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF-------------- 283
              + KDR + +  + Y+K+  EM  +F D+PE LENT EIA++C                
Sbjct: 235  TFNDKDRLKHSVKEFYVKSPQEMQKLFCDVPEVLENTQEIAQKCQLHLDLKNIEIKNKHT 294

Query: 284  --ILQVHAPILPRFIEKECDDIQKEEENELRN--------------KAVAGLEVRLAQGA 327
              IL  + P  P   +   +   KE   ++ N              K   GLE RL    
Sbjct: 295  GEILLKNTPATPPTFKHTTNYALKENLPQILNCSLESIDDAVYFAFKCRQGLEERLKH-- 352

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
            I    H   Y++RL+ E+ VI+ MKF GY LIV DF+ +AK+NNIPVGPGRGS AGS+ A
Sbjct: 353  IPTESHPI-YKKRLEHEIEVISSMKFPGYMLIVWDFVNFAKQNNIPVGPGRGSAAGSLVA 411

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            Y+L IT+IDPL++ LLFERFLNP+R+SMPD D+DFCQ RR E+I YV N YG   VAQ+I
Sbjct: 412  YSLKITNIDPLKYDLLFERFLNPERVSMPDIDMDFCQRRRGEMIEYVANTYGKFNVAQVI 471

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ----------AIADDSR 497
            TFGSL AK  +RDV R L MPY+  D   KLIP +    ++            A   +SR
Sbjct: 472  TFGSLLAKGVIRDVARVLNMPYNDADAFAKLIPAELGITLTKHIGKDGKEKDGAWEKESR 531

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP-LSQLVPMYRDVRSDLPVT 556
             +E     P   ++ + +  LEGL R+A THAA IVI  +  L   VP+Y + + +   T
Sbjct: 532  IKELVEKSPLAKQVWDYALLLEGLKRNAGTHAAAIVIDSQEELWHKVPLYTNDKMNGVAT 591

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTK 615
            Q++M W+E   LIKFDFLGLKTLT++  +++ + +R  K +D S +  DD++ Y  + + 
Sbjct: 592  QYSMNWLEPVDLIKFDFLGLKTLTVIDDAINLIKKRYEKEIDFSTMEMDDYKVYETIQSG 651

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
             TLG+FQ+ES GM+   + ++P   ED++A++SLYRPGP+D I  +  RK+G  KI  + 
Sbjct: 652  NTLGLFQIESEGMQAIAKRLKPSNFEDVVAMISLYRPGPMDLIDDFVARKHGLVKIEYLI 711

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
              ++P+LK T GVI+YQEQVMQI Q + G+SL  AD++RRAMGKK  +EM + K+ F  G
Sbjct: 712  DALEPILKPTYGVIVYQEQVMQIVQTIGGFSLGGADLVRRAMGKKKLDEMLRLKKEFADG 771

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A K G ++  A +++E++ KFA YGFNKSHAAAY +I+YQTA++KT+Y  EF+AA +T E
Sbjct: 772  AQKQGYNRAKAEDLWEIIVKFAGYGFNKSHAAAYGMITYQTAYLKTYYEHEFMAAMLTSE 831

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----NRIYYSLAAIKGVGTTTAR 851
             + +E I K+  + +   I+I+PP VN    +F VG+     +I + L+AIKG+G     
Sbjct: 832  TNKIESIAKYIDEVKSLGIEIVPPHVNISENNFGVGEFDGVKKIIFGLSAIKGLGDAPIE 891

Query: 852  HIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
            +I+E    +  + SLEDF +RVD  KL +R LE L+ +G LD  GYSR  +L+ +D +  
Sbjct: 892  NIIEEREKNGAYKSLEDFVARVDFSKLTKRSLEPLIKSGGLDNLGYSRKSMLEYIDILCD 951

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
              +   K +   H ++F  ++   +  + +      +     + E   +G Y SGHPLD 
Sbjct: 952  KGREKSKAQEMIHNSLFGEDEVEINIYLPITHKGEYDIRTLLDYEYECMGIYISGHPLDD 1011

Query: 971  YKPILRKMGIKGYEES--VATIRGNNI-RLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKE 1026
            +K  L+   IKG  +S  +  +  N++  L   V+S +++ ++K ++  G + F +   +
Sbjct: 1012 FKDKLK--NIKGIIKSLELENLEFNSVCMLVGKVLSIKRRISKKSNKPFGSIDFLDYGGK 1069

Query: 1027 YEANFF 1032
             E   F
Sbjct: 1070 IEIMVF 1075


>gi|311031337|ref|ZP_07709427.1| DNA polymerase III DnaE [Bacillus sp. m3-13]
          Length = 1108

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/1025 (36%), Positives = 616/1025 (60%), Gaps = 47/1025 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S VHL + SSYSLL  ++  + ++++       ++A+TD + ++ A++F +   +A I+P
Sbjct: 2    SVVHLYIKSSYSLLNSSVRFSKLVERANELGLNSLALTDEDVMYGAVDFYKACKSANIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L +     L     G++ +P    ++LL    +G+  L++L S +    Q K   
Sbjct: 62   IIGLTLSV-----LSDGEDGESTYP----VILLAKNNQGFTNLMKLSSVV----QTKSPQ 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +   WL+   T+GLI +  GS   + +    N  Q AE  L  F++   D LY+ + R+
Sbjct: 109  GVPKRWLKHY-TKGLIAILSGSESELAQ----NEEQTAEAYLEMFEQ---DCLYLGIDRN 160

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                R  +S+  +  ++ ELP+VA +   +L +ED   ++ L ++   T +  +  P+  
Sbjct: 161  SAESR-EQSETTRKRHS-ELPIVAMSKVHYLHKEDVFVYECLRSIKQGTKL--ESLPKEA 216

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            PD YL+  +EM  +F D+P+ALENT +I+ +C   L+     LP +   E    ++  + 
Sbjct: 217  PD-YLRATNEMTQLFEDIPDALENTWKISNQCHVELEFGQAALPSYPVPE----EENADE 271

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L      GL  R+       G  AQ+Y++RL +EL VI  MKFS YFLIV DF+ +A+ 
Sbjct: 272  YLEKICWEGLHKRV-------GEPAQEYKERLQYELQVIKGMKFSDYFLIVWDFMYYARN 324

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS AGS+ AY+L ITD+DP+   LLFERFLNP+R++MPD DIDF  ++RDE
Sbjct: 325  AGILTGPGRGSAAGSLVAYSLFITDVDPIEHDLLFERFLNPERITMPDIDIDFQDNKRDE 384

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VIRYV  KYG   VAQIITFG+L AKAA RDV +AL +   +++ + K+IP+ P   ++L
Sbjct: 385  VIRYVAEKYGQLHVAQIITFGTLAAKAAWRDVAKALNLSGKELEMISKMIPSRPG--ITL 442

Query: 490  QAI-ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             A   ++ + + A        R  + +QK+EGL RH+STHAAG+VI  +PL++L+P+ + 
Sbjct: 443  DAAYQENEKLQSAINETKERKRAFQTAQKIEGLPRHSSTHAAGVVITHKPLTELIPI-QA 501

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
             + D+ +TQ+ M+ +E+ GL+K DFLGL+ LT++Q S+    +R  K  +  IP DD  T
Sbjct: 502  GQQDIYLTQYTMETLEELGLLKMDFLGLRNLTMIQ-SIRHQVKRETKQHIEEIPLDDAAT 560

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL+   T GIFQLES GM++ L  ++P  +EDI+A+ +LYRPGP++ I ++  RK+G 
Sbjct: 561  FRLLSEGDTSGIFQLESPGMKKVLTKLKPSNLEDIVAVNALYRPGPMEQIPLFIERKHGL 620

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            +K+   HP + P+L++T GVI+YQEQ+MQIA +++G+SL EAD+LRRA+GKK K+ + K+
Sbjct: 621  KKVEYPHPDLIPILEKTFGVIVYQEQIMQIAAVMAGFSLGEADLLRRAVGKKKKDVLAKE 680

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F+ G  K G  + +A ++++L+ +FADYGFN+SHA AY++ISY+ A++K +YP  F+
Sbjct: 681  REHFVEGCLKKGYDEKVANSVYDLIVRFADYGFNRSHAVAYSMISYELAYLKANYPKIFM 740

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A  ++  M + +K+ ++  + ++  IQ++PPS+N   + F+V +  I +SL  IKGVG  
Sbjct: 741  ATLLSSVMGSEQKLSQYITETKRKGIQVLPPSINKSGIAFQVEEAGIRFSLLTIKGVGVQ 800

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
              + ++E    K F  L DFC+R  S K+NR+ +E L+F G++D F   R  LL +LD  
Sbjct: 801  AIKALIEERRKKEFSDLFDFCNRASS-KVNRKTIEMLIFGGSMDEFEEDRATLLATLDVA 859

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             ++A+ V  +  N+ +     E       + +E   +   + + + E+  LGFY S HP 
Sbjct: 860  MQHAELVMPSDDNQIDFFMEEEFNIKPKYVKVEPLQL---TEQLQLEKEALGFYLSKHPT 916

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            + +    + +G       + +      R+ + + +++  +T+KG  + ++T S+ + + E
Sbjct: 917  EPFAAYFQ-LGGGCLILDLPSTGARKARVGSFISNERVIRTKKGDLMAFLTLSDQSGDLE 975

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 976  AVAFP 980


>gi|228935912|ref|ZP_04098722.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
 gi|228823680|gb|EEM69502.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
          Length = 1108

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1033 (36%), Positives = 609/1033 (58%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG+  Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGN-FYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F       +   E 
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNET 279

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            N+  LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++
Sbjct: 280  NDMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+ G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            L    +YA               A + G   D +   K+ V+   + F      E+ VLG
Sbjct: 870  LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|188588146|ref|YP_001922465.1| DNA polymerase III DnaE [Clostridium botulinum E3 str. Alaska E43]
 gi|188498427|gb|ACD51563.1| DNA polymerase III subunit alpha [Clostridium botulinum E3 str.
            Alaska E43]
          Length = 1202

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/1008 (38%), Positives = 584/1008 (57%), Gaps = 59/1008 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL +H+ YSLL+G+  +  I+ K       +IAITD   L+  ++F + A   G
Sbjct: 15   KEKDFVHLHLHTGYSLLDGSGKIKEIMAKTKELGMNSIAITDHGVLYGLVDFYKAAIEYG 74

Query: 67   IQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            I+PI+GC++ +  +   +K  ++  + +     +VLLV    GY+ L+++VS   + +  
Sbjct: 75   IKPILGCEVYVAGKSMKIKQPDKDNSTY----HLVLLVKNEIGYRNLMKIVSTASI-EGF 129

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R+   +L+   ++G+I L+    G +       + + A++  L +K++F +  Y+ 
Sbjct: 130  YYKPRVDHEYLKA-HSDGIIALSACLGGEVQSHELKGNYEKAKETALLYKEIFKENFYLE 188

Query: 186  LQRHRGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +Q H G D  R+     +  + EL  PLVATN+  ++ ++ Y++HD+LM +     V   
Sbjct: 189  IQNH-GMDEQRKVNEENIKLSKELGIPLVATNDVHYIKKDGYKSHDILMCIQTGKTVDDV 247

Query: 244  DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +R R   D  YLK+  EM  +FS +PEALENTV+I+ +C++  + H   LP+F   E + 
Sbjct: 248  NRRRYPSDQFYLKSPEEMWEMFSYIPEALENTVKISEQCNYEYKFHESKLPKFPLPEGE- 306

Query: 303  IQKEEENELRNKAVAGLEVRLAQ---------------GAIAKGYHAQDYRQRLDFELNV 347
               E  N L+N    GL  R  +                  +K   A++   RL++EL +
Sbjct: 307  ---EPYNYLKNTCYMGLIERYEEFKEFRGKDLNYDKLDDLKSKNDSAKELIDRLEYELQI 363

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I +M +  YFLIV DFI++A  N IP GPGRGS AGS+ AY L IT IDP+++SL+FERF
Sbjct: 364  IKQMGYIDYFLIVWDFIKFANDNGIPTGPGRGSAAGSIIAYTLGITKIDPIKYSLIFERF 423

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPD D DFC +RR EVI YV  KYG + V+QIITFG++ A+A +RDVGRA+  
Sbjct: 424  LNPERVSMPDIDSDFCYERRQEVIDYVVEKYGEDNVSQIITFGTMAARACIRDVGRAMNY 483

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
             YS+VD++CK+IP      +  +A+  +   +E    D  V  L+++S+ LEGL RH+ST
Sbjct: 484  SYSEVDKICKMIPTMLGITIE-KALDFNPELKEIYDKDERVKSLIDMSKDLEGLPRHSST 542

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HAAG+VI   PL Q VP+ ++   ++ VTQF M  +E+ GL+K DFLGL+TLT++ ++L 
Sbjct: 543  HAAGVVIASTPLVQYVPLQKN--DEMIVTQFGMTTLEELGLLKMDFLGLRTLTVMNEALK 600

Query: 588  FLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             + + R + +DL  I FDD E Y ++    T G+FQLES GM   ++ ++PD +EDIIA 
Sbjct: 601  IIKENRNIDIDLDKIDFDDKEVYKMIGEGKTAGVFQLESPGMVSFMKELKPDSLEDIIAG 660

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            +SLYRPGP+  I  Y   K   EK+    P ++ +L  T GV++YQEQVM+I + L+GYS
Sbjct: 661  ISLYRPGPMAEIPRYIECKRNPEKVKYEAPELEEILDVTYGVMVYQEQVMEIVRKLAGYS 720

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFIS-----------GASKNGISKTIAVNIFELLAK 755
            +  +D++RRAM KK  + M+++++ FI            G  +NGIS+  A  IF+ +  
Sbjct: 721  MGRSDMVRRAMSKKKHKVMEEERKNFIHGIIENDEVIVPGCIRNGISEEAANKIFDNMMD 780

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSHAAAYAV+ YQTA++  +YPVE +AA +   M + EK+  +   A +  IQ
Sbjct: 781  FASYAFNKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSFMGSSEKVVYYISKAEELGIQ 840

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDS 874
            ++PP +N     F V    I + LAAIK VG      +++   +K  FDSL DF S++D 
Sbjct: 841  VLPPDINESFAKFTVKGETIRFGLAAIKNVGMNLINSVVKTRENKGKFDSLFDFISKIDL 900

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
              +N+R +ESL+ +G  D F   R +LL        Y + V+    ++  NI        
Sbjct: 901  SAINKRTIESLIKSGTFDSFKIYRSKLLAV------YEKMVDSISNDRKRNIDGQISLFA 954

Query: 935  SDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILR 976
            SD I + +    N +  F+       E+ + G Y SGHPLD Y   L+
Sbjct: 955  SDDIYVPEIEYPNIN-EFDKRSLLTMEKEMTGLYISGHPLDDYAQSLK 1001


>gi|297621741|ref|YP_003709878.1| DNA polymerase III, alpha subunit [Waddlia chondrophila WSU 86-1044]
 gi|297377042|gb|ADI38872.1| DNA polymerase III, alpha subunit [Waddlia chondrophila WSU 86-1044]
          Length = 1236

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/1029 (38%), Positives = 598/1029 (58%), Gaps = 68/1029 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L VHS YS+L+ + S+  I  K      PA+A+TD  NLF A++F +     G++PI
Sbjct: 2    FVPLHVHSQYSILDASASVKAIAAKAKEFGMPAVALTDHGNLFGAVDFYKSCKGNGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ I    N ++  + +          LL    EGY  L  L SR +L +      R
Sbjct: 62   IGCEVYI--APNSRLEKKKERGERAAFHQTLLAKNDEGYHNLCALSSRGFL-EGFYYFPR 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            I +  L+E  + GLI L+G  S  + +A    +    ++    + ++FG+  Y+ LQRH 
Sbjct: 119  IDMELLKE-RSRGLICLSGCMSSKLSQAILDGAGDECDRLADWYLEVFGEDFYIELQRHP 177

Query: 190  ------------------RGYDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDY 225
                              + Y  Y E Q      ++++A    +  VATN+S ++   D+
Sbjct: 178  MSEASLHEGGMYQESWLIQQYQGYIEKQNRLNDALLEIAERKGILYVATNDSHYIERSDW 237

Query: 226  EAHDVLMAVAHSTVV----------------SQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            +AH+VL+ V     V                + K R   + + Y K+  EM  +F DLPE
Sbjct: 238  QAHEVLLNVQSGEPVEIWEKDSLGNPKFRVPNPKRRTYSSHEFYFKSPDEMGELFKDLPE 297

Query: 270  ALENTVEIARRCSFILQV---HAPI-LPRFIEK-ECDDIQKEEENE--LRNKAVAGLEVR 322
            AL NT+ IA +C+  L     H P+ +P  IE  E  D ++ E  E  LR     G+  R
Sbjct: 298  ALSNTLAIADKCTMELDFETKHYPVYVPPSIENTEYTDAERVESVEKFLRQLCAEGIPKR 357

Query: 323  LAQGAIAKG---YHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
                 + K    Y  +D      +RL+ E++VIA      Y LIV DFI WAK + IPVG
Sbjct: 358  YTPERLEKVKEVYPDRDPLEVVHERLEEEMSVIAPKGMCDYLLIVWDFINWAKNHGIPVG 417

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
            PGRGSGAGS+  Y + ITDI+PLRF+L FERF+NP+R+S PD D+D C DRR +VI+Y  
Sbjct: 418  PGRGSGAGSIVLYLIGITDIEPLRFNLFFERFINPERLSYPDIDVDICMDRRGDVIQYTL 477

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIAD 494
            +KYG + VAQIITFG+++AK  LRDVGR L +P ++V+ + KL+P+D    ++L+ A+  
Sbjct: 478  DKYGKDNVAQIITFGTMKAKMVLRDVGRVLSVPLAKVNEIAKLVPDDLN--ITLETALEK 535

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
            D   R+    D    RL+++ +KLEG  R+   HAAGI+I   PL   +P+     +++P
Sbjct: 536  DHDLRQLYEQDEETRRLVDLGKKLEGSIRNTGIHAAGIIICGDPLVNHIPVCVAKDAEMP 595

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLT 613
             TQ++MK  E+ G++K DFLGLKTLT +Q  ++ + +R G ++D   +P D+ + ++LL 
Sbjct: 596  ATQYSMKPAEQVGMLKVDFLGLKTLTAIQTCVNAIKERVGEQIDWVNLPLDNEKAFNLLN 655

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
               TLG+FQLES GM+     +  D  E+IIA+ +LYRPGP+D I  + NRK+G+E+I  
Sbjct: 656  QGKTLGVFQLESGGMQDLARQLHLDKFEEIIAVSALYRPGPMDMIPSFINRKHGREEIDY 715

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
             HP +  +L ET G+++YQEQVMQIAQ L+ YSL E DVLRRAMGKK  E+M  Q+E+F 
Sbjct: 716  DHPWMKEILAETYGIMVYQEQVMQIAQKLANYSLGEGDVLRRAMGKKDAEQMAAQREKFR 775

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
             GA +NGIS+ +++NIF+ + KFA YGFNKSHAAAY+ I+Y TA++K +YP E++AA MT
Sbjct: 776  LGALENGISENVSMNIFDKMEKFAAYGFNKSHAAAYSYIAYVTAFLKANYPEEWMAALMT 835

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
             +  ++ K+ KF ++ +   I+++PP VN     F      I ++++ IKGVGT+    I
Sbjct: 836  CDRHDLTKLSKFIRECQAMQIKMLPPDVNEAGTTFMASKEGIRFAMSGIKGVGTSVVEAI 895

Query: 854  M-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            + E      F+SL  F  R+DS K+ ++V+E+LV AG  D  G+SR QL  S++ + + A
Sbjct: 896  VAEREKGGRFESLYQFIKRIDSSKVGKKVIENLVEAGCFDFTGWSRDQLRMSVEPMFESA 955

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLE--KFSVENSSVR-FENEQRVLGFYFSGHPLD 969
               +K       ++F    G  ++ +  E  K ++   S + +  E+ +LGF+ +GHP++
Sbjct: 956  MKEKKEEKAGVRSLF-ELMGENNENLFAEPPKVNMPTPSRQIYLKEKELLGFFLTGHPMN 1014

Query: 970  VYKPILRKM 978
             +K IL ++
Sbjct: 1015 SFKDILERL 1023


>gi|52140905|ref|YP_085924.1| DNA polymerase III DnaE [Bacillus cereus E33L]
 gi|51974374|gb|AAU15924.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
          Length = 1108

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1033 (36%), Positives = 609/1033 (58%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG+  Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGN-FYMSLQHHA 165

Query: 191  GYDRYRESQVVQLAYTH-ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + + +  +   +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPVFMSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +YLK+  EM ++FS   EA+ NTVEIA RC   +  H   LP+F       +   E 
Sbjct: 226  TDQYYLKSSDEMEALFSHAEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNET 279

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            N+  LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++
Sbjct: 280  NDMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+ G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            L    +YA               A + G   D +   K+ V+   + F      E+ VLG
Sbjct: 870  LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|283953915|ref|ZP_06371444.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
           414]
 gi|283794520|gb|EFC33260.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
           414]
          Length = 1200

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/1007 (39%), Positives = 598/1007 (59%), Gaps = 67/1007 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4   FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129
           IG +  +   D L      +  F     + L      GYQ L+ L S+ Y+  +G     
Sbjct: 64  IGIEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFG 179
           RI    L+E  +EGLI  +    G +        +R   F +   + A++  L +KK+F 
Sbjct: 117 RINKKLLEEY-SEGLICSSACLQGEVNWHLNTYNERNVRFGAKGYEAAKEAALWYKKVFK 175

Query: 180 DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
           D  Y  + RH  G  R  +  +++L+    + ++ATN++ +  ++   AH+V M +A   
Sbjct: 176 DDFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKDRAAAHEVFMCIAMGK 235

Query: 239 VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-- 295
            ++   R R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F  
Sbjct: 236 KLNDPGRIRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKF 295

Query: 296 ---IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDF 343
                KE + I  EE  E    N  +        GLE RL    I +  H ++Y+QRL+ 
Sbjct: 296 TREYAKEYNIILPEETKEFSFDNDDIVFEELCKKGLEERLK--FINESKH-EEYKQRLEV 352

Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
           E+N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLL
Sbjct: 353 EINIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLL 412

Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           FERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R
Sbjct: 413 FERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVAR 472

Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR------LLEISQK 517
              M     D L KL+P +      L+   D +  +E ++ +  ++R      + E ++ 
Sbjct: 473 VCDMSIQDADELAKLVPEE------LKITLDAAYEKEPKIKE-FIERHHKGFEVWEYAKA 525

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLG 575
           LEGL R+A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLG
Sbjct: 526 LEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLG 585

Query: 576 LKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
           LKTLT++  ++  + +R  K +    I  +D + Y  + +  TLGIFQ+ES GM+     
Sbjct: 586 LKTLTVINNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESDGMQSLNAR 645

Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           ++P+  EDIIA+++LYRPGP+++ ++  + +RK+G + I      ++ +L+ T GVI+YQ
Sbjct: 646 LKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIKYPFDSLEKVLEPTYGVIVYQ 705

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQVMQI Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G ++T A +++EL
Sbjct: 706 EQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKKLKIDFADGAEKQGYNRTEAEDLWEL 765

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           + KFA YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ 
Sbjct: 766 IVKFAGYGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKM 825

Query: 813 NIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
           NI+++PPS+N    +F      G + I Y L AIK VG     +++EA  +  F  + DF
Sbjct: 826 NIKLLPPSINKAIREFSALEQDGRDAIIYGLGAIKSVGIPAVENLLEARQNGEFKDINDF 885

Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             ++D  K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F 
Sbjct: 886 LGKIDPTKVNRRTLESLIKAGAFDEFGFTRKALFDNMENLSEVSRKMAEVRKNAASSLFG 945

Query: 929 HEKGTFSDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            E+ T   ++      E+F V     + E E+ +LG Y SGHPLD +
Sbjct: 946 EEELTSGVQVNFIPKNEEFEVME---KLEYEKEILGIYVSGHPLDRF 989


>gi|206969546|ref|ZP_03230500.1| DNA polymerase III, alpha subunit [Bacillus cereus AH1134]
 gi|206735234|gb|EDZ52402.1| DNA polymerase III, alpha subunit [Bacillus cereus AH1134]
          Length = 1108

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/1033 (36%), Positives = 610/1033 (59%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306
             D +YLK+  EM ++FS  PE ++NT++IA RC   +  H   LP+F     E  DI   
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEVIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     GL  R  +    K  H +    RL+ ELNVI+RM FS YFLIV DF+++
Sbjct: 284  ----LRRVCEEGLRKRYGE---PKEVHIK----RLNHELNVISRMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP +  +L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKSILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            +    +YA               A + G   D +   K+ V+   + F      E+ VLG
Sbjct: 870  IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|75760293|ref|ZP_00740343.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
            israelensis ATCC 35646]
 gi|74492203|gb|EAO55369.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
            israelensis ATCC 35646]
          Length = 1108

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/1033 (36%), Positives = 610/1033 (59%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306
             D +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     E  DI   
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     GL  R        G   + + +RL+ ELNVI+RM FS YFLIV DF+++
Sbjct: 284  ----LRRVCEEGLRKRY-------GAPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAERVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D F  SR  L +S
Sbjct: 810  IGMATVTALLEERKKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFXVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            +    +YA               A + G   D +   K+ V+   + F      E+  LG
Sbjct: 870  IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|30264675|ref|NP_847052.1| DNA polymerase III DnaE [Bacillus anthracis str. Ames]
 gi|47530144|ref|YP_021493.1| DNA polymerase III DnaE [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187493|ref|YP_030746.1| DNA polymerase III DnaE [Bacillus anthracis str. Sterne]
 gi|65321971|ref|ZP_00394930.1| COG0587: DNA polymerase III, alpha subunit [Bacillus anthracis str.
            A2012]
 gi|165869605|ref|ZP_02214263.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0488]
 gi|167634005|ref|ZP_02392328.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0442]
 gi|167638118|ref|ZP_02396396.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0193]
 gi|170685920|ref|ZP_02877143.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0465]
 gi|170705551|ref|ZP_02896015.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0389]
 gi|177651072|ref|ZP_02933903.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0174]
 gi|190569023|ref|ZP_03021923.1| DNA polymerase III, alpha subunit [Bacillus anthracis Tsiankovskii-I]
 gi|227817389|ref|YP_002817398.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. CDC 684]
 gi|229600791|ref|YP_002868883.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0248]
 gi|254687412|ref|ZP_05151268.1| DNA polymerase III DnaE [Bacillus anthracis str. CNEVA-9066]
 gi|254724975|ref|ZP_05186758.1| DNA polymerase III DnaE [Bacillus anthracis str. A1055]
 gi|254736712|ref|ZP_05194418.1| DNA polymerase III DnaE [Bacillus anthracis str. Western North
            America USA6153]
 gi|254741749|ref|ZP_05199436.1| DNA polymerase III DnaE [Bacillus anthracis str. Kruger B]
 gi|254754653|ref|ZP_05206688.1| DNA polymerase III DnaE [Bacillus anthracis str. Vollum]
 gi|254757485|ref|ZP_05209512.1| DNA polymerase III DnaE [Bacillus anthracis str. Australia 94]
 gi|30259350|gb|AAP28538.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. Ames]
 gi|47505292|gb|AAT33968.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. 'Ames
            Ancestor']
 gi|49181420|gb|AAT56796.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. Sterne]
 gi|164714434|gb|EDR19953.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0488]
 gi|167513935|gb|EDR89303.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0193]
 gi|167530806|gb|EDR93508.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0442]
 gi|170129676|gb|EDS98539.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0389]
 gi|170670384|gb|EDT21124.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0465]
 gi|172082898|gb|EDT67960.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0174]
 gi|190559805|gb|EDV13790.1| DNA polymerase III, alpha subunit [Bacillus anthracis Tsiankovskii-I]
 gi|227004404|gb|ACP14147.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. CDC 684]
 gi|229265199|gb|ACQ46836.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0248]
          Length = 1108

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1033 (36%), Positives = 609/1033 (58%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG+  Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGN-FYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F       +   E 
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNET 279

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            N+  LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++
Sbjct: 280  NDMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+ G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DAKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            L    +YA               A + G   D +   K+ V+   + F      E+ VLG
Sbjct: 870  LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|170758690|ref|YP_001788703.1| DNA polymerase III DnaE [Clostridium botulinum A3 str. Loch Maree]
 gi|169405679|gb|ACA54090.1| DNA polymerase III, alpha subunit [Clostridium botulinum A3 str. Loch
            Maree]
          Length = 1185

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/1078 (35%), Positives = 621/1078 (57%), Gaps = 61/1078 (5%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q+ EK P ++ L  H+ YSLL+ +  + +++ K       +IAITD   ++  ++F ++
Sbjct: 4    NQFDEKKPEWISLHQHTEYSLLDSSAKIADLIKKAKEFGMKSIAITDHGVMYGCVDFYKE 63

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   GI+PIIGC++ +    ++ +  Q K        +VLLV    GY+ L+E+VS+  +
Sbjct: 64   AIKQGIKPIIGCEIYV-ASKSMYIKQQDKEN--ETHHLVLLVKNEIGYKNLMEIVSKASV 120

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             +      R+   +L++  +EGLI L+    G +       + + AE+  L +K +F + 
Sbjct: 121  -EGFYYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFEEG 178

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ LQ H   ++ + ++ +V+++   ++PLVATN+  ++ +EDY++HD+L+ +     V
Sbjct: 179  FYLELQYHGMEEQLKVNEALVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTV 238

Query: 241  SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEK 298
             +++R R   D  YLK+  EM   FS +PEALENTV+I+  C+F    H   LP+F +E+
Sbjct: 239  EEENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEE 298

Query: 299  ECDDIQKEEENELRNKAVAGLEVR-----------------LAQGAIAKGYHAQDYRQRL 341
              D  +      LR     GL +R                 L  G   K   A D  +RL
Sbjct: 299  GVDPYEY-----LREICFKGLFLRYEVLKDFIDNPFSIDEVLVYGDENK--EAFDLIERL 351

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            ++EL++I +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++
Sbjct: 352  NYELSIIKQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYN 411

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            L+FERFLNPDR+SMPD D DFC +RR EVI YV  KYG   V+QIITFG++ A+A +RDV
Sbjct: 412  LIFERFLNPDRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDV 471

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            GRA+  PY++VDR+ K+IP+     +  +A+  +   +E    +  V  L+++++ LEGL
Sbjct: 472  GRAMNYPYAEVDRIAKMIPSVLNITID-KALELNPELKETYDDEERVKELIDVARALEGL 530

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             RH STHAAG+VI  +PL   VP+ ++  S   VTQF M  +E+ GL+K DFLGL+TLT+
Sbjct: 531  PRHTSTHAAGVVIASQPLVNYVPLQKNEES--IVTQFTMGTLEELGLLKMDFLGLRTLTV 588

Query: 582  LQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++ ++  + + +G+ +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +
Sbjct: 589  MRDAVRIIRENKGIDIDLDNIDFEDKEVYKMIGQGQTVGVFQLESAGMTSFMKELKPDSL 648

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            EDIIA +SLYRPGP+  I  Y   KN    I      ++P+L  T   I+YQEQVMQI +
Sbjct: 649  EDIIAGISLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVR 708

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI--------SGASKNGISKTIAVNIFEL 752
             L+GYS+  +D++RRAM KK  + M++++  FI         G   NGI + +A N+F+ 
Sbjct: 709  DLAGYSMGRSDLVRRAMSKKKHDVMEQERRNFIYGNGDEGVKGCINNGIDENVANNLFDS 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA Y FNKSHAAAYAV+ +QTA++  +YP EF+AA +     + +K+  +   A+  
Sbjct: 769  MMDFASYAFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTL 828

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSR 871
             I+I+ P++N    +F V DNRI + L A+K VG     +I+ +   K  F  L DF ++
Sbjct: 829  GIEIVAPNINESYSNFTVKDNRIIFGLTAVKNVGERGIDNIVLSREQKGNFTDLSDFFNK 888

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            VD+  +N+R++ESL+ AGA DC    R ++L   + I    Q  ++N      N+F    
Sbjct: 889  VDTSIINKRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIM 948

Query: 932  GTFSDKITLEKFSVENSSVRF--ENEQRVLGFYFSGHPLDVYKPILR------------K 977
                  + ++  ++     ++  + E+ + G YFSGHPL+ Y+  L+            K
Sbjct: 949  DNKESSMDIKYPNINEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTNHHISDIISK 1008

Query: 978  MGIKG-YEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              ++G   ++V++I+ G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1009 ESLEGNLVDTVSSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|168178944|ref|ZP_02613608.1| DNA polymerase III, alpha subunit [Clostridium botulinum NCTC 2916]
 gi|226950824|ref|YP_002805915.1| DNA polymerase III DnaE [Clostridium botulinum A2 str. Kyoto]
 gi|182670052|gb|EDT82028.1| DNA polymerase III, alpha subunit [Clostridium botulinum NCTC 2916]
 gi|226842287|gb|ACO84953.1| DNA polymerase III, alpha subunit [Clostridium botulinum A2 str.
            Kyoto]
          Length = 1185

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/1076 (35%), Positives = 625/1076 (58%), Gaps = 57/1076 (5%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q+ EK P +V L  H+ YSLL+ +  +++++ +       +IAITD   ++  ++F ++
Sbjct: 4    NQFDEKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKE 63

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   GI+PIIGC++ +    ++ +  Q K        +VLLV    GY+ L+E+VS+  +
Sbjct: 64   AIKQGIKPIIGCEIYV-ASKSMYIKQQDKEN--ETHHLVLLVKNEIGYKNLMEIVSKASV 120

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             +      R+   +L++  +EGLI L+    G +       + + AE+  L +K +F + 
Sbjct: 121  -EGFYYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFKEG 178

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ LQ H   ++ + ++ +V+++   ++PLVATN+  ++ +EDY++HD+L+ +     V
Sbjct: 179  FYLELQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTV 238

Query: 241  SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEK 298
             +++R R   D  YLK+  EM   FS +PEALENTV+I+  C+F    H   LP+F +E+
Sbjct: 239  EEENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEE 298

Query: 299  ECDDIQKEEENELRNKAVAGLEVR--LAQGAIAKGY-------------HAQDYRQRLDF 343
              D  +      LR     GL +R  + +  I K +              A D  +RL++
Sbjct: 299  GVDPYEY-----LRKICFKGLFLRYEVLKDFIDKPFSIDEVLVYGNENKEAFDLIERLNY 353

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL++I +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+
Sbjct: 354  ELSIIKQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLI 413

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNPDR+SMPD D DFC +RR EVI YV  KYG E V+QIITFG++ A+A +RDVGR
Sbjct: 414  FERFLNPDRISMPDIDSDFCYERRGEVIDYVVEKYGKENVSQIITFGTMAARACIRDVGR 473

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            A+  PY++VDR+ K+IP      ++ +A+  +   +E    +  V  L+++++ LEGL R
Sbjct: 474  AMNYPYAEVDRIAKMIPTVLNITIN-KALELNPELKEVYDNEERVRELIDVARALEGLPR 532

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
            H STHAAG+VI  +PL   VP+ ++  S   VTQF M  +E+ GL+K DFLGL+TLT+++
Sbjct: 533  HTSTHAAGVVIASQPLVNYVPLQKNEES--IVTQFTMGTLEELGLLKMDFLGLRTLTVMR 590

Query: 584  KSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             ++  + + + + +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +ED
Sbjct: 591  DAVRIIKENKEINIDLDNIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLED 650

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            IIA +SLYRPGP+  I  Y   KN    I      ++P+L  T   I+YQEQVMQI + L
Sbjct: 651  IIAGISLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDL 710

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFI--------SGASKNGISKTIAVNIFELLA 754
            +GYS+  +D++RRAM KK  + M++++  FI         G   NGI + +A ++F+ + 
Sbjct: 711  AGYSMGRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMM 770

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNKSHAAAYAV+ +QTA++  +YP EF+AA +     + +K+  +   A+   I
Sbjct: 771  DFASYAFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGI 830

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873
            +I+ P++N    +F V DNRI + L A+K VG     +I+ +   K  F  L DF ++VD
Sbjct: 831  EIIAPNINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVD 890

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +  +N+R++ESL+ AGA DC    R ++L   + I    Q  ++N      N+F      
Sbjct: 891  TSIINKRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDN 950

Query: 934  FSDKITLEKFSVENSSVRF--ENEQRVLGFYFSGHPLDVYKPILR------------KMG 979
                + ++  +++    ++  + E+ + G YFSGHPL+ Y+  L+            K  
Sbjct: 951  KESSMDIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKES 1010

Query: 980  IKG-YEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++G   +++++I+ G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1011 LEGNLVDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|196047476|ref|ZP_03114687.1| DNA polymerase III, alpha subunit [Bacillus cereus 03BB108]
 gi|225866581|ref|YP_002751959.1| DNA polymerase III, alpha subunit [Bacillus cereus 03BB102]
 gi|196021691|gb|EDX60387.1| DNA polymerase III, alpha subunit [Bacillus cereus 03BB108]
 gi|225787407|gb|ACO27624.1| DNA polymerase III, alpha subunit [Bacillus cereus 03BB102]
          Length = 1107

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1033 (36%), Positives = 609/1033 (58%), Gaps = 62/1033 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I         ++ +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI--------FSEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 106

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG+  Y++LQ H 
Sbjct: 107  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGN-FYMSLQHHA 164

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 165  IQDELLLQEKLPAFINRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 224

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F       +   E 
Sbjct: 225  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNET 278

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            N+  LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++
Sbjct: 279  NDMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 332  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 392  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 449

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 450  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 509

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+ G ++D+  +P  
Sbjct: 510  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 568

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 569  DEKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 628

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 629  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 688

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 689  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 748

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 749  LEFMTALLSSAIGNEDKIMQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 808

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 809  IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 868

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            L    +YA               A + G   D +   K+ V+   + F      E+ VLG
Sbjct: 869  LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 911

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 912  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 970

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 971  CDQNDEMEAVLFP 983


>gi|322807697|emb|CBZ05272.1| DNA polymerase III alpha subunit [Clostridium botulinum H04402 065]
          Length = 1185

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/1076 (35%), Positives = 625/1076 (58%), Gaps = 57/1076 (5%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q+ EK P +V L  H+ YSLL+ +  +++++ +       +IAITD   ++  ++F ++
Sbjct: 4    NQFDEKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKE 63

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   GI+PIIGC++ +    ++ +  Q K        +VLLV    GY+ L+E+VS+  +
Sbjct: 64   AIKQGIKPIIGCEIYV-ASKSMYIKQQDKEN--ETHHLVLLVKNEIGYKNLMEIVSKASV 120

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             +      R+   +L++  +EGLI L+    G +       + + AE+  L +K +F + 
Sbjct: 121  -EGFYYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFKEG 178

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ LQ H   ++ + ++ +V+++   ++PLVATN+  ++ +EDY++HD+L+ +     V
Sbjct: 179  FYLELQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTV 238

Query: 241  SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEK 298
             +++R R   D  YLK+  EM   FS +PEALENTV+I+  C+F    H   LP+F +E+
Sbjct: 239  EEENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEE 298

Query: 299  ECDDIQKEEENELRNKAVAGLEVR--LAQGAIAKGY-------------HAQDYRQRLDF 343
              D  +      LR     GL +R  + +  I K +              A D  +RL++
Sbjct: 299  GVDPYEY-----LRKICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNY 353

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL++I +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+
Sbjct: 354  ELSIIKQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLI 413

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNPDR+SMPD D DFC +RR EVI YV  KYG E V+QIITFG++ A+A +RDVGR
Sbjct: 414  FERFLNPDRISMPDIDSDFCYERRGEVIDYVVEKYGKENVSQIITFGTMAARACIRDVGR 473

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            A+  PY++VDR+ K+IP      ++ +A+  +   +E    +  V  L+++++ LEGL R
Sbjct: 474  AMNYPYAEVDRIAKMIPTVLNITIN-KALELNPELKEVYDNEERVRELIDVARALEGLPR 532

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
            H STHAAG+VI  +PL   VP+ ++  S   VTQF M  +E+ GL+K DFLGL+TLT+++
Sbjct: 533  HTSTHAAGVVIASQPLVNYVPLQKNEES--IVTQFTMGTLEELGLLKMDFLGLRTLTVMR 590

Query: 584  KSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             ++  + + + + +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +ED
Sbjct: 591  DAVRIIKENKEINIDLDNIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLED 650

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            IIA +SLYRPGP+  I  Y   KN    I      ++P+L  T   I+YQEQVMQI + L
Sbjct: 651  IIAGISLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDL 710

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFI--------SGASKNGISKTIAVNIFELLA 754
            +GYS+  +D++RRAM KK  + M++++  FI         G   NGI + +A ++F+ + 
Sbjct: 711  AGYSMGRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMM 770

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNKSHAAAYAV+ +QTA++  +YP EF+AA +     + +K+  +   A+   I
Sbjct: 771  DFASYAFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGI 830

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873
            +I+ P++N    +F V DNRI + L A+K VG     +I+ +   K  F  L DF ++VD
Sbjct: 831  EIIAPNINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVD 890

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +  +N+R++ESL+ AGA DC    R ++L   + I    Q  ++N      N+F      
Sbjct: 891  TSIINKRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDN 950

Query: 934  FSDKITLEKFSVENSSVRF--ENEQRVLGFYFSGHPLDVYKPILR------------KMG 979
                + ++  +++    ++  + E+ + G YFSGHPL+ Y+  L+            K  
Sbjct: 951  KESSMDIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKES 1010

Query: 980  IKG-YEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++G   +++++I+ G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1011 LEGNLVDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|229180923|ref|ZP_04308258.1| DNA polymerase III subunit alpha [Bacillus cereus 172560W]
 gi|228602480|gb|EEK59966.1| DNA polymerase III subunit alpha [Bacillus cereus 172560W]
          Length = 1105

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/1032 (36%), Positives = 611/1032 (59%), Gaps = 61/1032 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+I
Sbjct: 1    MHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVI 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   I
Sbjct: 61   GLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
               WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H  
Sbjct: 106  PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAI 163

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              +   + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  
Sbjct: 164  QAELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223

Query: 251  D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKEE 307
            D +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     E  DI    
Sbjct: 224  DQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY--- 280

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     GL  R  +    K  H +    RL+ ELNVI+RM FS YFLIV DF+++A
Sbjct: 281  ---LRRVCEEGLRKRYGE---PKEVHIK----RLNHELNVISRMGFSDYFLIVWDFMKYA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RR
Sbjct: 331  HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRR 390

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +
Sbjct: 391  DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448

Query: 488  SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V + 
Sbjct: 449  TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D
Sbjct: 508  QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQD 567

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K
Sbjct: 568  EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +
Sbjct: 628  HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +
Sbjct: 688  DQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +
Sbjct: 748  EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+
Sbjct: 808  GMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSI 867

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961
                +YA               A + G   D +   K+ V+   + F      E+ VLGF
Sbjct: 868  KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLGF 910

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF 
Sbjct: 911  YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITFC 969

Query: 1022 EPAKEYEANFFP 1033
            +   E EA  FP
Sbjct: 970  DQNDEMEAVLFP 981


>gi|313895480|ref|ZP_07829036.1| DNA polymerase III subunit alpha [Selenomonas sp. oral taxon 137 str.
            F0430]
 gi|312975606|gb|EFR41065.1| DNA polymerase III subunit alpha [Selenomonas sp. oral taxon 137 str.
            F0430]
          Length = 1130

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/1037 (37%), Positives = 602/1037 (58%), Gaps = 36/1037 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+GA  +  ++ +       +IAITD   ++ A+ F ++A A GI P
Sbjct: 2    SFVHLHVHTEYSLLDGASRIKELVQRTKELGMDSIAITDHGVMYGAIAFYKEAMAQGIHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  Q   +        +     ++LL     GY+ L+ LVS +  ++      
Sbjct: 62   IIGCEVYVAPQSRHERAEVDGVRYY---HLILLAENEIGYRNLVRLVS-LANIEGYYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L++   EG+I L+   +G I R+      +  ++ L  +  +FG D  ++ LQ 
Sbjct: 118  RVDKDLLRQY-HEGIIALSACVAGEIPRSILRGDPERTDEILAEYVDIFGRDNFFLELQD 176

Query: 189  HRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    +  ++ L+  H++ LVATN+  ++  ED E HD+L+ V     ++  +R R
Sbjct: 177  HGLPEEKTVNHALRDLSKKHDIGLVATNDIHYVRAEDSEFHDILLCVQTGRTINDPNRMR 236

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKECDDI 303
             + PD+YLK+ +EM ++F D P A+ENT +IA RC       ++  P  P   EK  DD 
Sbjct: 237  FSGPDYYLKSEAEMTALFHDYPGAVENTAKIAARCRVDFTFGELQLPFYP-IPEKFADD- 294

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                +  LR      L  R ++          + R RLD+EL VI  M ++ YFLIV DF
Sbjct: 295  ----DAYLRTLCEERLPERYSE-------ITNEIRSRLDYELGVIHGMGYASYFLIVWDF 343

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I +A+ + + VGPGRGS AGS+ AY L IT+IDPLR++LLFERFLNP+R+SMPD DIDF 
Sbjct: 344  INYARGHGVAVGPGRGSAAGSIVAYLLGITNIDPLRYALLFERFLNPERVSMPDIDIDFD 403

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
               R  VI YV+ +YG + VAQI TFG++ AK A+RDVGR L+M +S+V  + KL+P++ 
Sbjct: 404  DINRGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVGRVLEMSFSEVSNITKLVPSEL 463

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A+ + + FR     D SV R++++++K+EGL R+ S HAAG+VI   PL+  V
Sbjct: 464  NITID-RALKESADFRRLYDEDESVRRVIDLARKIEGLPRNTSIHAAGVVIAKEPLTNHV 522

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIP 602
            P++  +     VT+F+   +E  GL+K DFLGL+TL++++ +L +     G+ +D+  IP
Sbjct: 523  PVW--ISEGTLVTEFDKDDVEALGLLKMDFLGLRTLSIIEDALKNIRTSHGIDIDIDNIP 580

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             +D  T  +L    T  +FQ+ES+GM   ++ +QP    D+I  V+LYRPGP+ + +V  
Sbjct: 581  LEDDLTAQMLCDGDTGAVFQMESAGMTNLVKDLQPKGFVDLIPTVALYRPGPLGSGMVTD 640

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + +  +GK+++V +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK
Sbjct: 641  FIDGLHGKKEVVYMHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKK 700

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                +  QKE F++G + NGI   +A +IF+LL  FADYGFNKSH+A+Y ++++QTA++K
Sbjct: 701  KHALLMAQKESFLAGCANNGIDAPLANHIFDLLTHFADYGFNKSHSASYGLLAWQTAYLK 760

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEF+A  +T  MD  +KI  + +   Q  I+I+PP +N+    F +    I + LA
Sbjct: 761  AHYPVEFMAGVLTSIMDKTDKIPVYIRLCHQMKIRILPPDINSSAATFSIESGAIRFGLA 820

Query: 841  AIKGVG---TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            A++ VG        H+ E     PF SL DFC+RVD + LN+R +ESL+  GA D  G  
Sbjct: 821  AVRNVGENAIAVLEHVREEGG--PFRSLVDFCTRVDLRTLNKRAIESLIKCGAFDSLGID 878

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQ 956
            R  LL SL+     A   +++  +    +F  +      +I   +   +     R   E+
Sbjct: 879  RNHLLASLNAAVTDAARRQRDLLSGQIGLFGDDAMAEVQQIGDFDDVPLCTPRERLTWEK 938

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
               GFY +GHPL+ Y+  L  +   G   +        +R+  ++ S ++  T+KG  + 
Sbjct: 939  EATGFYITGHPLEDYQETLSHLQPIGQIAAAVQRDRQLMRVGGILTSTKRFTTKKGDTML 998

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +    +     E   FP
Sbjct: 999  FADLEDFTGTLEVTVFP 1015


>gi|49478699|ref|YP_038648.1| DNA polymerase III DnaE [Bacillus thuringiensis serovar konkukian
            str. 97-27]
 gi|49330255|gb|AAT60901.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
            konkukian str. 97-27]
          Length = 1108

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1033 (36%), Positives = 607/1033 (58%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +F D  Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMF-DNFYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +YLK+  EM ++FS   EA+ NTVEIA RC   +  H   LP+F       +   E 
Sbjct: 226  TDQYYLKSSDEMEALFSHAEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNET 279

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            N+  LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++
Sbjct: 280  NDMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+ G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            L    +YA               A + G   D +   K+ V+   + F      E+ VLG
Sbjct: 870  LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|224827306|ref|ZP_03700398.1| DNA polymerase III, alpha subunit [Lutiella nitroferrum 2002]
 gi|224600481|gb|EEG06672.1| DNA polymerase III, alpha subunit [Lutiella nitroferrum 2002]
          Length = 1147

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/1041 (37%), Positives = 586/1041 (56%), Gaps = 40/1041 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL++HS +S+ +G + L++ + +      PAI ++D  NLF  ++F +     GI+
Sbjct: 4    PRFVHLRLHSEFSVYDGIVRLDDAVKRAKQHGMPAIGMSDLMNLFGMVKFYKACRGNGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+     I   D+    ++          ++L      GY RL +L+++  L +Q +  
Sbjct: 64   PIVSVDALISNDDDRDKPSR----------LLLTAKNRAGYLRLCDLLTQAVLHNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   WL+      LI L+G   G +  A       VAE+R   +  LF D  Y+ +QR
Sbjct: 114  AELKREWLENGDNSQLICLSGAHLGDVGMALANGQRDVAERRARYWAGLFPDNFYLEVQR 173

Query: 189  HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                D  +   VVQ    LA    LP+VAT+   F+  +D++AH+  + +A    +  K 
Sbjct: 174  ---LDNPQIEGVVQQTLWLAGETGLPVVATHPIQFMDPDDFKAHEARVCIAEGYTLGDKR 230

Query: 245  RPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP+   +  Y  +  EM+  F D+PEALEN+VEIARRC+  +Q+    LP F   E   +
Sbjct: 231  RPKNFAECQYFLSTEEMIERFHDIPEALENSVEIARRCNITVQLGKNYLPDFPTPEGMTL 290

Query: 304  QKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                ++ L + +  GLE RL +       +      Y  RL  E + I +M F GYFLIV
Sbjct: 291  ----DDYLVHLSKEGLETRLEKLYPDPEVRAAERPRYDARLKIECDTIVQMGFPGYFLIV 346

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFI WAK N  PVGPGRGSGAGS+ A++L ITDIDPL ++LLFERFLNP+R+SMPDFD+
Sbjct: 347  ADFIVWAKNNGCPVGPGRGSGAGSLVAFSLGITDIDPLAYALLFERFLNPERVSMPDFDV 406

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQD R  VI YV+ KYG E V+QI TFG++ AKA +RDVGR L +PY   D + KLIP
Sbjct: 407  DFCQDNRYRVIEYVRQKYGAEAVSQIATFGTMAAKAVVRDVGRVLDLPYMFCDGVSKLIP 466

Query: 481  NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              P    SL  A+  +   +E    +  +  L E+++KLEGL R    HA G++I    +
Sbjct: 467  AAPGKQYSLDDAVEMEPILKERLENEEELRELWELAKKLEGLTRGIGMHAGGVLIAPGKI 526

Query: 540  SQLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--QRGVKV 596
            +   P+Y+    D +PV+  +   +E+ GL+KFDFLGL+ LT++  ++ ++         
Sbjct: 527  TDFCPVYQAAGDDAVPVSMLDKDDVEQIGLVKFDFLGLRNLTIIDLAVKYIKALDPAFDT 586

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL+L+ F D   Y +L    T  +FQLES GM++ LE ++PD  EDIIA+++LYRPGP+ 
Sbjct: 587  DLNLLEFTDPAAYQILQKANTTAVFQLESDGMKRLLEKLKPDRFEDIIAVLALYRPGPLG 646

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +V  +  RK GK+++   HP +   L+ T GVI+YQEQVMQI+Q++ GY+L  AD+LR
Sbjct: 647  SGMVDDFILRKAGKQEVDYFHPDLTACLEPTYGVIVYQEQVMQISQIIGGYTLGGADMLR 706

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM + + +   GA+  G    +A  +F+L+AKFA+YGFNKSH AAYAV+SY
Sbjct: 707  RAMGKKKPEEMAEHRGKIAQGAAAKGYDPKLAEQLFDLMAKFAEYGFNKSHTAAYAVVSY 766

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDN 833
            QTAW+K H+   F+AA+M+ E+DN +++K F  D+    ++ +PP VN     F  V   
Sbjct: 767  QTAWLKAHHCAAFMAATMSSELDNTDQLKVFYDDSIANKLKFLPPDVNESFYRFVPVDRQ 826

Query: 834  RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y+L A+KG G     HI+    +  PF  L DFC R D + +N+R +ESL+ AGA D
Sbjct: 827  HIRYALGAVKGTGEAAVEHIVAVRQEGGPFTDLFDFCRRTDKRTVNKRTIESLIRAGAFD 886

Query: 893  CFGYSRMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
                +R +L  ++   ++   Q           ++F  +     + + ++ +     +V+
Sbjct: 887  AIEPNRAKLFANVGLAMEAAEQEAANANQGGLFDMFDADSAPTVEMVEVKPWP---PAVQ 943

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               E+  +G+Y SGHP   Y+  +R  G      S  T R     +A  V   + K   +
Sbjct: 944  LAEEKLAIGYYLSGHPFSAYEKEVR--GFIKTPLSRITPRKEPQLIAGFVTGLRTKVGNR 1001

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G ++ ++   + + + E + F
Sbjct: 1002 G-KMAFIQLDDGSAKREVSVF 1021


>gi|187935605|ref|YP_001887524.1| DNA polymerase III DnaE [Clostridium botulinum B str. Eklund 17B]
 gi|187723758|gb|ACD24979.1| DNA polymerase III subunit alpha [Clostridium botulinum B str. Eklund
            17B]
          Length = 1203

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/1004 (38%), Positives = 585/1004 (58%), Gaps = 59/1004 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSLL+G+  +  I+ K       +IAITD   L+  ++F + A   GI+PI
Sbjct: 20   FVHLHLHTGYSLLDGSGKIKEIMAKTKELGMNSIAITDHGVLYGLVDFYKAALEYGIKPI 79

Query: 71   IGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +GC++ +  +   +K  ++  + +     +VLLV    GY+ L+++VS   + +      
Sbjct: 80   LGCEVYVAGKSMKIKQPDKDNSTY----HLVLLVKNEIGYRNLMKIVSTASI-EGFYYKP 134

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+   +L+   +EGLI L+    G +       + + A++  + +K++F +  Y+ +Q H
Sbjct: 135  RVDHEYLKA-HSEGLIALSACLGGEVQSYELKGNYEKAKETAILYKEIFKEDFYLEIQNH 193

Query: 190  RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             G D  R+     +  + EL  PLVATN+  ++ ++ Y++HD+LM +     V   +R R
Sbjct: 194  -GMDEQRKVNEENIKLSKELGIPLVATNDVHYIKKDGYKSHDILMCIQTGKTVDDVNRRR 252

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  YLK+  EM  +FS +PEALENTV+I+++C++  + H   LP+F   + +    E
Sbjct: 253  YPSDQFYLKSPEEMWEMFSYIPEALENTVKISKQCNYEYKFHESKLPKFPLPQGE----E 308

Query: 307  EENELRNKAVAGLEVRLAQ---------------GAIAKGYHAQDYRQRLDFELNVIARM 351
              N L+N    GL  R  +                  +K   A++   RL++EL +I +M
Sbjct: 309  PYNYLKNTCYMGLIERYEEFKELRDKDLDYDELDDLKSKNDSAKNLIDRLEYELQIIRQM 368

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             +  YFLIV DFI++A  N IP GPGRGS AGS+ AY L IT IDP+++SL+FERFLNP+
Sbjct: 369  GYIDYFLIVWDFIKFANDNGIPTGPGRGSAAGSIIAYTLGITKIDPIKYSLIFERFLNPE 428

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD D DFC +RR EVI YV  KYG + V+QIITFG++ A+A +RDVGRA+   YS+
Sbjct: 429  RVSMPDIDSDFCYERRQEVIDYVVEKYGEDNVSQIITFGTMAARACIRDVGRAMNYSYSE 488

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            VD++CK+IP      +  +A+  +   +E    D  V  L+++S+ LEGL RH+STHAAG
Sbjct: 489  VDKICKMIPTMLGITIE-KALDFNPELKEIYDKDERVKSLIDMSKDLEGLPRHSSTHAAG 547

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI   PL Q VP+ ++   ++ VTQF M  +E+ GL+K DFLGL+TLT++ ++L  + +
Sbjct: 548  VVIASTPLVQYVPLQKN--DEMIVTQFGMTTLEELGLLKMDFLGLRTLTVMNEALKIIKE 605

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
             R + +DL  I F+D E Y ++    T G+FQLES GM   ++ ++PD +EDIIA +SLY
Sbjct: 606  NRNIDIDLDKIDFEDKEVYKMIGEGKTAGVFQLESPGMVSFMKELKPDSLEDIIAGISLY 665

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+  I  Y   K   EK+    P ++ +L  T GV++YQEQVM+I + L+GYS+  +
Sbjct: 666  RPGPMAEIPRYIECKRNPEKVKYDAPELEEILDVTYGVMVYQEQVMEIVRKLAGYSMGRS 725

Query: 711  DVLRRAMGKKIKEEMDKQKERFIS-----------GASKNGISKTIAVNIFELLAKFADY 759
            D++RRAM KK  + M+++++ FI            G  +NGIS+  A  IF+ +  FA Y
Sbjct: 726  DMVRRAMSKKKHKVMEEERKNFIHGIIENDEVVVPGCIRNGISEEAANKIFDNMMDFASY 785

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSHAAAYAV+ YQTA++  +YPVE +AA +   M + EK+  +   A +  IQ++PP
Sbjct: 786  AFNKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSFMGSSEKVVYYISKAEELGIQVLPP 845

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878
             +N     F V    I + LAAIK VG      +++   +K  FDSL DF S++D   +N
Sbjct: 846  DINESFAKFAVKGETIRFGLAAIKNVGMNLINSVVKTRENKGKFDSLFDFISKIDLSAIN 905

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            +R +ESL+ +G  D F   R +LL        Y + V+   +++  NI        SD I
Sbjct: 906  KRTIESLIKSGTFDSFKIYRSKLLAV------YEKMVDSISSDRKRNIDGQISLFASDDI 959

Query: 939  TLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILR 976
             + +    N +  F+       E+ + G Y SGHPLD Y   L+
Sbjct: 960  YVPEIEYPNIN-EFDKRSLLTMEKEMTGLYISGHPLDDYAQSLK 1002


>gi|254304372|ref|ZP_04971730.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
            nucleatum subsp. polymorphum ATCC 10953]
 gi|148324564|gb|EDK89814.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
            nucleatum subsp. polymorphum ATCC 10953]
          Length = 1133

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/1035 (37%), Positives = 611/1035 (59%), Gaps = 64/1035 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSL EG  S+++ L K       ++A+TD  N+F A+EF QKA   GI+P
Sbjct: 4    NFVHLNLHTEYSLSEGVNSIDSFLVKAKELGMTSLAVTDYANMFCAIEFYQKAKKMGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L I  +D              + S+ LL     GY+ L++L S +Y  ++ ++ +
Sbjct: 64   IIGLELPISNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKNNENRE-L 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFG-DRLYVNLQ 187
            ++    L+E  ++ LI L+   +G I +A   NSS     +++  + ++F  +  Y+ +Q
Sbjct: 112  KLNKEILKE-HSQDLIALSSSMNGEIGKAILTNSSDEKVNKIIDEYIEIFSKENFYLEIQ 170

Query: 188  RHRGYDRYRESQVVQ-----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                 +   E++++      LA  H+L LVATNN  ++  + YE  D+++ +     V +
Sbjct: 171  A----NELSETKIINDRFYDLAKFHDLELVATNNVYYVDRDGYELQDIIICIQSGLKVKE 226

Query: 243  KDRPR-VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            K+R R ++ + YLK++ EM     +   +A+EN   IA  C+  +       P +     
Sbjct: 227  KNRKRAISKELYLKSKDEMKRFLGEKFEKAIENANYIADLCNVEIGFGNLQFPYY----- 281

Query: 301  DDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYH---AQDYRQRLDFELNVIARMKFS 354
             ++  E          +G++  L       I K Y     +D   RL++EL+VI +M +S
Sbjct: 282  -EVPSE---------YSGMDEYLKTICHTNIKKLYKEDLTKDILDRLEYELSVIIKMGYS 331

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYF++V DFI +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+S
Sbjct: 332  GYFIVVWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERIS 391

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD DID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+
Sbjct: 392  MPDIDIDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDK 451

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            L KL+   P   +  + + ++    +    D  + ++++++ ++E   RH STHAAGI+I
Sbjct: 452  LSKLVS--PFQALE-KTLKENVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILI 508

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
                L + VP+Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + 
Sbjct: 509  TKEDLDKTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKN 568

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            V +DL  IP DD + +H+L+   + G+FQLES G+R+ ++ ++PD  EDI+AL++LYRPG
Sbjct: 569  VDIDLYKIPLDDKKVFHMLSLGDSTGVFQLESPGIRKIMKRLKPDKFEDIVALLALYRPG 628

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+ + +V  + NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD
Sbjct: 629  PLQSGMVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEAD 688

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK    M + +E+FI  A  NG +   +  IFEL+ KFA YGFNKSH+ AYA+
Sbjct: 689  LLRRAMGKKNFAIMRENREKFIERAIHNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAM 748

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISY TA+ K +YP  + AA MT E+     I  +  DA++  +++  P+VN+P   F+V 
Sbjct: 749  ISYWTAYFKAYYPAFYYAAVMTSEISETGDIAYYFNDAKEHGVRVYSPNVNSPSAYFEVK 808

Query: 832  DNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            +  I YSLAAIK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GA
Sbjct: 809  NEGITYSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGA 868

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFSVEN 947
            LD    +R +   S+D +  Y+    K    +  N+F     T  DK  L   E F+++ 
Sbjct: 869  LDEIKGNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGAAAKTI-DKFNLAISEDFTLDE 927

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQ 1006
               +   EQ  LGFY S HPLD YK IL    IK   E    + GN  I+    + + ++
Sbjct: 928  ---KLNKEQEFLGFYLSSHPLDRYKDILTTFSIKKLSE--FDLEGNQVIKTFGTITNLKK 982

Query: 1007 KKTRKGSRIGWVTFS 1021
              T+K  ++     S
Sbjct: 983  TITKKEEQMAMFNLS 997


>gi|229543549|ref|ZP_04432609.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
 gi|229327969|gb|EEN93644.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
          Length = 1114

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/1037 (37%), Positives = 606/1037 (58%), Gaps = 60/1037 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV ++YSLLE  +S+        A     +AITD N ++ A  F +     GI+PI
Sbjct: 3    FVHLQVQTAYSLLESTISIPEWAAYAKALHYDTLAITDRNVMYGAFPFYKACRENGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG   DI        + +  T +P    +VLL     GY+ L+++ S +    Q +    
Sbjct: 63   IGMTADI------MSSFEPDTAYP----VVLLAKNETGYRHLMKISSAI----QTRPEPG 108

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I + WL+   ++GLI  T G  G I++A        AE+  + ++ +FG   Y+ L+ + 
Sbjct: 109  IFIKWLRAY-SDGLIAFTPGLEGEIEQALLRGDEARAEEVAVLYRDIFGPSFYLALENN- 166

Query: 191  GYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            G  + ++      A + +L  P VA  N  +L +ED  AH+VL A+     ++ ++RPR 
Sbjct: 167  GTVQAKKVLPDMHALSEKLGIPEVAAANVKYLKKEDAFAHEVLRAIKAGVKLTDENRPRP 226

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +  H  K + EM  +F+D PEAL NT +IA  CS  ++    +LP F            
Sbjct: 227  ESGTHDFKPQEEMEQLFADFPEALANTEKIADACSVEIKTGQRLLPAFPVPGG------- 279

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                   A A LE    +G  A+  + ++ Y  RL++EL +I  M+FS YFLIV DF+++
Sbjct: 280  -----QTADAFLEEVCRKGLAARVPNLEERYTDRLEYELKIIQEMQFSDYFLIVWDFMKY 334

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+++ I  GPGRGS AGS+ AYAL ITD+DP+++ LLFERFLNP+R+SMPD D DF   +
Sbjct: 335  AREHGILTGPGRGSAAGSLVAYALYITDVDPVQYGLLFERFLNPERISMPDIDSDFPDHK 394

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV  KYG + VAQIITFG+  AKAA RDV R   +   ++++L + IP+ P   
Sbjct: 395  RDEMIRYVAEKYGRQHVAQIITFGTFAAKAAARDVARIFGLSAKELEQLSRFIPSQPGMT 454

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A    S FRE         +L E +  LEGL RH STHAAG++I   PL+ ++P+ 
Sbjct: 455  LK-KAYEASSAFREWIGQSDQHRKLFETALLLEGLPRHVSTHAAGVIISGEPLTGIIPV- 512

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            ++    + +TQ+ M  +E+ GL+K DFLGL+ LT+L+  L  + +  G K+ L  +P DD
Sbjct: 513  QEGHDGIFLTQYPMNHLEEIGLLKMDFLGLRNLTILEHILTGIEKGTGRKIRLQDVPLDD 572

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T+ L ++  T GIFQ ES GMR+ LE ++P   EDI+A+ +LYRPGP++NI  Y  RK
Sbjct: 573  PQTFRLFSSGNTTGIFQFESDGMRKVLERLKPTEFEDIVAVNALYRPGPMENIPAYIERK 632

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G + +   HP + P+L++T GVI+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E +
Sbjct: 633  HGLKPVEYPHPDLQPILEKTYGVIVYQEQIMQIASKMAGFSLGEADLLRRAVSKKKREIL 692

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+Q+  FI+GA K G  +  A  I++ + +FA+YGFN+SHA AY++++ + A++K HYP+
Sbjct: 693  DEQRLHFINGAQKKGYERKTANTIYDFIVRFANYGFNRSHAVAYSMLACRLAYLKAHYPL 752

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F+A+ +T  + N +KI ++ ++A+Q  I+++PPSV      F V +  I YSLAAIKG+
Sbjct: 753  YFMASLLTSVIGNEDKIAQYIREAQQMGIRVLPPSVQHSHYPFTVENGAIRYSLAAIKGI 812

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G  + + +++    +PF SL D   RV  K LNR++LE+  F+GA+D FG  R  LL S+
Sbjct: 813  GYASIKELLKERKRRPFKSLFDLVLRV--KGLNRKILEAFAFSGAMDEFGKDRAVLLASI 870

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN---------EQ 956
            D   ++A+ ++ +  +   ++F      F D    E FS+E + V  E          E+
Sbjct: 871  DVALEHAEIMKPD--DGQADLF------FED----EAFSIEPNYVETEPISLMDKLAFEK 918

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            + LG Y SGHP   Y+P   + G+    +    +R   IR  A +   +  +T++GS + 
Sbjct: 919  QYLGLYLSGHPAGQYRPGWDEAGVLAVSKLQPGMR--KIRFGACITDTRTIRTKQGSLMA 976

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++  S+   E E   FP
Sbjct: 977  FLRMSDETDEIECVVFP 993


>gi|228910428|ref|ZP_04074243.1| DNA polymerase III subunit alpha [Bacillus thuringiensis IBL 200]
 gi|228849194|gb|EEM94033.1| DNA polymerase III subunit alpha [Bacillus thuringiensis IBL 200]
          Length = 1105

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/1032 (36%), Positives = 609/1032 (59%), Gaps = 61/1032 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+I
Sbjct: 1    MHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVI 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   I
Sbjct: 61   GLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H  
Sbjct: 106  PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAI 163

Query: 192  YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  
Sbjct: 164  QDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223

Query: 251  D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKEE 307
            D +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     E  DI    
Sbjct: 224  DQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY--- 280

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     GL  R        G   + + +RLD ELNVI+RM FS YFLIV DF+++A
Sbjct: 281  ---LRRVCEEGLRKRY-------GAPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RR
Sbjct: 331  HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRR 390

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +
Sbjct: 391  DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448

Query: 488  SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V + 
Sbjct: 449  TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D
Sbjct: 508  QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQD 567

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K
Sbjct: 568  EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +
Sbjct: 628  HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D++++ F+ G  +NG  +  A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +
Sbjct: 688  DQERKHFVQGCLQNGYDEMSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +
Sbjct: 748  EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+
Sbjct: 808  GMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSI 867

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961
                +YA               A + G   D +   K+ V+   + F      E+  LGF
Sbjct: 868  KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALGF 910

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF 
Sbjct: 911  YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITFC 969

Query: 1022 EPAKEYEANFFP 1033
            +   E EA  FP
Sbjct: 970  DQNDEMEAVLFP 981


>gi|148381587|ref|YP_001256127.1| DNA polymerase III DnaE [Clostridium botulinum A str. ATCC 3502]
 gi|148291071|emb|CAL81534.1| DNA polymerase III, subunit alpha [Clostridium botulinum A str.
           ATCC 3502]
          Length = 1194

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/1003 (37%), Positives = 586/1003 (58%), Gaps = 52/1003 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  +NNI+         +IAITD   ++  ++F + A  AG++ I
Sbjct: 6   FTHLHLHTGYSLLDGAGKINNIIASAKELGMDSIAITDHGAMYGCVDFYKAAKNAGLKAI 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IGC++ I  +    M+ +   P   +  +VLLV    GY+ LI++VS+  + D      R
Sbjct: 66  IGCEVYIVPK---SMSIKNSDPNNKIYHLVLLVKNEIGYKNLIKIVSKASI-DGFYYKPR 121

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               +L++  +EGLI L+    G I       + + A++  L +K +F D  Y+ LQ H 
Sbjct: 122 TDHQFLKD-HSEGLIALSACLGGEIQSNLLNENKEKAKEIALFYKSIFKDGFYLELQYH- 179

Query: 191 GYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
           G D  R+     ++LA   ++PLVATN+  ++ ++D + HD+L+ +     V++++R R 
Sbjct: 180 GNDAERKVNDMNIRLARELKIPLVATNDVHYIEQKDSKFHDILLCIQTGKTVNKENRLRY 239

Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             D  YLK+  EM  +FS +PEAL+NT +IA +C+F    H   LP+F+  E  D     
Sbjct: 240 PSDQFYLKSADEMWEMFSHVPEALKNTEKIAEQCNFHYDFHTSKLPKFLLPEGTD----P 295

Query: 308 ENELRNKAVAGLEVR--LAQGAIAKGYH-------------AQDYRQRLDFELNVIARMK 352
              ++     GL  R  L +  + K ++             A+ Y  RL +EL+VI  M 
Sbjct: 296 FEYMKKFCFKGLIKRCDLFRDLLTKSFNINEIIALGKENEEAKIYIDRLQYELSVIDHMG 355

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           +  YFLIV+DFI++A +  IP GPGRGSGAGS+ AY L IT IDP+++ L+FERFLNP+R
Sbjct: 356 YVDYFLIVSDFIKFANEKKIPTGPGRGSGAGSLVAYTLGITKIDPIKYGLIFERFLNPER 415

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
           +SMPD D DFC +RR E+I YV  KYG E V+QIITFG++ A+  +RDVGRA+   Y +V
Sbjct: 416 ISMPDIDSDFCYERRGEIIDYVVEKYGKENVSQIITFGTMAARVCIRDVGRAMNYSYVEV 475

Query: 473 DRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
           D++ K+IP  P   +++ +A+A +   +     +  V  L+++S  LEGL RH+STHAAG
Sbjct: 476 DKIAKMIPIVPGIIITIDKALALNPELKNEYENNLRVKELIDVSMNLEGLPRHSSTHAAG 535

Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
           I+I   P+   VP+ ++  +   V+QF+M  +++ G +K DFLGLKTLT+L+ ++D + Q
Sbjct: 536 IIISSSPIGDYVPLQKNEHN--IVSQFDMTTLDELGFLKMDFLGLKTLTVLKDAVDMIMQ 593

Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              V +DL  I  +D E Y ++    T+GIFQLES+GM   ++ ++PD +EDIIA +SLY
Sbjct: 594 NHNVDIDLDKIDINDKEVYKMIGEGKTIGIFQLESTGMTSFMKELKPDSLEDIIAGISLY 653

Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           RPGPID I  Y   K   +KI  + P ++P+LK T G ++YQEQVM+I + L+GYS+  +
Sbjct: 654 RPGPIDEIPKYIENKKNPDKITYLTPQLEPILKITYGCLVYQEQVMEIVRKLAGYSMGRS 713

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASK------------NGISKTIAVNIFELLAKFAD 758
           D++RRAM KK  + M+++++ FI G  K            N +S+ I   +F+ +  FA 
Sbjct: 714 DLVRRAMSKKKHKVMEEERKNFIYGIVKEDGEIEVPGCIRNEVSEKIGNELFDSMMDFAS 773

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           Y FNKSHA AYA+++YQTA++  +YP E++AA +   M +  K+  +   A    IQ++P
Sbjct: 774 YAFNKSHAVAYALVAYQTAYLMKYYPAEYIAAKLNSVMGDNGKVAYYINYAESLGIQVLP 833

Query: 819 PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKL 877
           P +N     F V DN I + L AIK VG   A+ I+++   +  F SL DF S++D   +
Sbjct: 834 PDINESFSKFIVEDNTIRFGLDAIKNVGIGAAKIIVKSRKKNGNFKSLIDFASKIDLTTI 893

Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
           N+R +ESL+ AGA DCF   R +LL   + +        K   +   ++F  +    +  
Sbjct: 894 NKRAIESLIKAGAFDCFKVFRSRLLAVYEKVLDSISNQRKRNIDGQVSLFNADNTIVNIP 953

Query: 938 IT----LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
           I     +++F   +       E+ +LG Y +GHPLD Y   L+
Sbjct: 954 IIKYPEIKEF---DKKYLLAMEKEMLGIYITGHPLDEYAQSLK 993


>gi|42783781|ref|NP_981028.1| DNA polymerase III DnaE [Bacillus cereus ATCC 10987]
 gi|42739711|gb|AAS43636.1| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987]
          Length = 1108

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/1033 (36%), Positives = 609/1033 (58%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG+  Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYQNMFGN-FYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPAFISKINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F       +   E 
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNET 279

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            N+  LR     GL+ R        G   + + +RL+ ELNVI+ M FS YFLIV DF+++
Sbjct: 280  NDMYLRRVCEEGLQKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+ G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            L    +YA               A + G   D +   K+ V+   + F      E+ VLG
Sbjct: 870  LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPTLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|154499865|ref|ZP_02037903.1| hypothetical protein BACCAP_03522 [Bacteroides capillosus ATCC 29799]
 gi|150271463|gb|EDM98720.1| hypothetical protein BACCAP_03522 [Bacteroides capillosus ATCC 29799]
          Length = 1161

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/1055 (36%), Positives = 598/1055 (56%), Gaps = 56/1055 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ +SLL+GA  +  +  ++    Q A+AITD   ++ A++F +   A G++P
Sbjct: 2    SFVHLHVHTEFSLLDGACRIPALAARVRELGQSAVAITDHGVMYGAVDFYRACKAEGVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG---K 126
            IIGC++ +  +    MT++          +VLL     GY+ L  LVSR +L   G   K
Sbjct: 62   IIGCEVYVAPRG---MTDRVHELDAEARHLVLLCKNETGYRNLCYLVSRAFL--DGFYIK 116

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              +   L W     TEGLI ++   +G + R     + + A++  L  K+ FG+  Y+ +
Sbjct: 117  PRIDKELLWQH---TEGLIAMSACLAGEVPRLILGGNYEGAKRAALEMKEHFGEDYYLEI 173

Query: 187  QRHRGYDRYRESQVVQ-LAYTHE---LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            Q H       +++VV+ +   HE   +PLVATN++ +   ED    D LM +     V  
Sbjct: 174  QDH---SLPEDAEVVRGIIRIHEETGIPLVATNDAHYTRREDAAMQDTLMCIQMGRTVDD 230

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              R +  T + Y+K+  EM  +F D PEA+ENTV +A +C+   +     LP F   +  
Sbjct: 231  PGRMKFETEEFYIKSEEEMAQLFPDWPEAIENTVRVAEKCNLEFEFGKYHLPEF---KLP 287

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +   + +    +    G   R  +G+       Q  +++L++E+ VI +M F  YFLIV+
Sbjct: 288  EGWTDPDAYFEHLCWEGFARRYPEGS-------QKNKEQLEYEMGVIRQMGFVDYFLIVS 340

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI +AK +NIPVGPGRGS AGS+ +Y + ITD+DP+++ L FERFLNP+R++MPD DID
Sbjct: 341  DFIGYAKSHNIPVGPGRGSAAGSMVSYCMNITDVDPVKYDLFFERFLNPERVTMPDIDID 400

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC  RR EVI YVQ KYG + VAQI+TFG++ A+ A+RDVGRAL +PY+ VD + K +P+
Sbjct: 401  FCIRRRQEVIEYVQQKYGEDHVAQIVTFGTMAARGAIRDVGRALNIPYADVDAVAKQVPS 460

Query: 482  DPA--HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             P   H    +++    + R++   D  +  L++ ++ +EG+ RHASTHAAG+VI  RP+
Sbjct: 461  GPGALHITLDESLKLSKQLRDSYEGDERIHNLIDTAKAIEGMPRHASTHAAGVVITKRPV 520

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             + VP+ ++  S   VTQ+ M  +E+ GL+K DFLGL+ LT+L  ++  + +R    D+ 
Sbjct: 521  YEYVPLAKNDES--VVTQYVMTTLEELGLLKMDFLGLRNLTVLDDAVQLVRRRIPDFDIH 578

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP  D   + +L+   T G+FQ+ES+GM     G++P  IEDI A+++LYRPGP+++I 
Sbjct: 579  SIPDHDPAVFKMLSDGKTSGVFQMESAGMTGVCVGLKPQNIEDITAIIALYRPGPMESIP 638

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +   K   +K+   HP+++P+LK T G I+YQEQV++I Q L GYSL +AD++RRA+ K
Sbjct: 639  RFIACKQNPDKVKYKHPMLEPILKVTYGCIVYQEQVIRIFQELGGYSLGQADMVRRAISK 698

Query: 720  KIKEEMDKQKERFISGASKNGISKTIA--------VNIFELLAKFADYGFNKSHAAAYAV 771
            K K +++K+++ FI G S+ GI   IA         +I++ +  FA+Y FNK+HA +YA+
Sbjct: 699  KKKAQIEKERQTFIYGDSERGIEGCIARGVPEQTGKDIYDEIYDFANYAFNKAHAVSYAI 758

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA+ K HY  E++AA +T  +D+ EK+ ++  + ++  I ++PP +N     F V 
Sbjct: 759  VAYQTAYFKCHYTREYMAALLTSVLDSSEKVAEYIAECKECGISLLPPDINESGASFTVT 818

Query: 832  DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I + LAA+KGVG    + ++ E      F SL DFCSR+    LN+RVLE+L+  GA
Sbjct: 819  GENIRFGLAAVKGVGWGFIQSVLDERERGGAFQSLSDFCSRMMDADLNKRVLENLIKCGA 878

Query: 891  LDCFGYSRMQLLQSLDN-IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
             D  G  R QLL+     +   AQ   KN   +  ++F            +E   +   S
Sbjct: 879  FDSTGARRSQLLKVFPQVVDSIAQTRRKNLEGQF-DLFGGGGDQPQAAPEMELPDIPEFS 937

Query: 950  VR--FENEQRVLGFYFSGHPLDVYKPILRK---MGIKGYEESVATIRGNN-------IRL 997
             R     E+   G Y +GHP+D Y+   R+     I       A   GN        + +
Sbjct: 938  RRELMTMEKETTGLYLTGHPMDEYRETARRYHAAPIGAILSDFAKEEGNTDFQDGQKVNI 997

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A ++ S + K TR  S + +VT  +     E   F
Sbjct: 998  AGVISSAKTKTTRNNSLMAYVTLEDDTGSMELLVF 1032


>gi|118479750|ref|YP_896901.1| DNA polymerase III DnaE [Bacillus thuringiensis str. Al Hakam]
 gi|118418975|gb|ABK87394.1| DNA polymerase III catalytic subunit, DnaE type [Bacillus
            thuringiensis str. Al Hakam]
          Length = 1108

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/1033 (36%), Positives = 605/1033 (58%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + Q +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEQEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE     ++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDEESQAEAVARAYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPAFMSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306
             D +YLK+  EM ++FS  PEA++NT+ IA RC   +  H   LP+F     E  DI   
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIRIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     GL+ R        G   + +  RL+ EL+VI+ M FS YFLIV DF+++
Sbjct: 284  ----LRRVCEEGLQKRY-------GTPKEVHINRLNHELSVISSMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+ G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIRFIVQKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            L    +YA               A + G   D +   K+ V+   + F      E+ VLG
Sbjct: 870  LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|257465914|ref|ZP_05630225.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
            25563]
 gi|315917070|ref|ZP_07913310.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
            25563]
 gi|313690945|gb|EFS27780.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
            25563]
          Length = 1144

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/1038 (37%), Positives = 613/1038 (59%), Gaps = 43/1038 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSLL+G   + + + +  + +  AIAITD  N+F ALEF QKA   G++PI
Sbjct: 4    FVHLHLHTEYSLLDGVGKIEDYMKRAKSLRMKAIAITDHGNMFGALEFYQKAQKYGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  ++I + +      +G+        ++LL    EGYQ L++L S  YL +      R
Sbjct: 64   IG--VEIYLSEYPLAEKKGRNF-----HLILLAENYEGYQNLMKLSSLAYL-EGFYYKPR 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA-EKRLLTFKKLFG-DRLYVNLQR 188
            +    L++  ++G+I L+   +G I       + +   E  +L ++ +FG +  Y+ +Q 
Sbjct: 116  LDKELLKKY-SKGIIALSACMNGEIASYILEGAEESKIEATILEYQDIFGKENFYLEVQA 174

Query: 189  HRGYDRYRESQVVQLAYTH----ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            H   +   + QV +  Y      ++PLVATN++ ++++ ++   DV++ +   + +S + 
Sbjct: 175  H---EEIEQQQVNEALYAFGKKMKIPLVATNDTHYVNKGEHILQDVIICIQTGSHLSDEK 231

Query: 245  RPRV-TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R+   D YLK+  EM ++  +   EAL+N+VEIA+RC   + +H    P +   E   
Sbjct: 232  RMRIEMQDLYLKSYEEMYAVLGEQYQEALQNSVEIAKRCQLWIPMHEFQFPDYNLPEG-- 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFLIV 360
            I   EE  L+     GL  R  QG         D R  +R+++EL++I +M ++GYF++V
Sbjct: 290  ISSLEEY-LKKLTYEGLGKRYPQGL--------DERIVERVEYELSIINKMGYAGYFVVV 340

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI +A+   IP+GPGRGS AGS+ AYAL IT +DPL + L+FERFLNP+R+SMPD DI
Sbjct: 341  WDFISFARSRKIPIGPGRGSAAGSLVAYALEITQLDPLEYRLIFERFLNPERISMPDIDI 400

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D CQ+RR E+I YV  KYG ++VAQI TFG+L+A+AA+RDVGR + +  S++D+  K IP
Sbjct: 401  DICQERRQEIIDYVVQKYGQDKVAQIATFGTLKARAAIRDVGRVMDVELSKIDKAAKCIP 460

Query: 481  NDPAHPVSLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                   SL+ + +++   +     D  +  ++  + ++E   RH STHAAG++I  + L
Sbjct: 461  ----MFASLREVLEENIELKTMYQQDVELKNVINTAMRIENKVRHISTHAAGVLITKKSL 516

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
            ++ VP+Y D ++ +  TQ+ MK +E+ GL+K DFLGL+TLT+LQ++ D++ +  G K++L
Sbjct: 517  TESVPLYADSKNGIVSTQYQMKELEELGLLKIDFLGLRTLTILQRTQDYIEENTGKKIEL 576

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S IP  D   Y +L+   + G+FQ+ES G+R  L+ +QP+   DI+AL+SLYRPGP+ + 
Sbjct: 577  SEIPLQDKTVYEMLSKGDSFGVFQMESRGLRSILKRLQPNSFGDIVALLSLYRPGPLGSG 636

Query: 659  VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V  + +RK+GK+ I   HP ++ +LKET GVI+YQEQVM+IA +++ YSL EAD+LRRA
Sbjct: 637  MVDDFIDRKHGKKAIEYPHPSLEEVLKETYGVILYQEQVMKIANIMADYSLGEADLLRRA 696

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  E M + + +FI  + K G S+  A  IF+L+ KFA YGFNKSH+AAYA+I+Y T
Sbjct: 697  MGKKNVEIMHENRSKFIERSIKKGYSREKAEEIFDLIDKFAGYGFNKSHSAAYALIAYWT 756

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A+ K HYP  F AA ++ E+ +++KI  +  DA+   ++I  P V  P   F V  ++I 
Sbjct: 757  AYCKVHYPKYFYAALLSSEISDIDKISFYFADAKAHGVEIETPDVQFPSSRFVVKGDKIL 816

Query: 837  YSLAAIKGVGT-TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            ++L+AIK VGT  + +   E      F S EDF  R+  + LN++ LE+ ++AGALD   
Sbjct: 817  FALSAIKNVGTGISEKIKEEREKKGEFRSYEDFVERMKKEGLNKKGLEAFIYAGALDSLS 876

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R + ++SLD +  Y Q   K    +  N+F   K     + +L +       V  E E
Sbjct: 877  GNRHEKIESLDKVLDYVQRKAKADDIQQMNLFGDSKKNLV-QFSLSRIEEYPMEVLLEKE 935

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LGFY S +PLD Y+ + +      +           + L  ++ + ++ +T+KG  +
Sbjct: 936  KEFLGFYVSANPLDRYESLYQSFDFDEFNIIKEENMEREVWLYGIIQNLKKTRTKKGDAM 995

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +        +     FP
Sbjct: 996  AFADLENYQGQIPMVIFP 1013


>gi|229175312|ref|ZP_04302827.1| DNA polymerase III subunit alpha [Bacillus cereus MM3]
 gi|228608144|gb|EEK65451.1| DNA polymerase III subunit alpha [Bacillus cereus MM3]
          Length = 1108

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/1033 (36%), Positives = 608/1033 (58%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEEKSYP----LVLLAENEMGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +F D  Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYQSMF-DNFYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPAFMSRINVPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F       +   E 
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHINQLPKF------PVPANET 279

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            N+  LR     GL+ R        G   + + +RL+ ELNVI+ M FS YFLIV DF+++
Sbjct: 280  NDMYLRRVCEEGLQKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ ++ G ++DL  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGTQIDLRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEEREKKVFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            L    +YA               A + G   D +   K+ V+   + F      E+  LG
Sbjct: 870  LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVLFP 984


>gi|257452286|ref|ZP_05617585.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
 gi|317058829|ref|ZP_07923314.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
 gi|313684505|gb|EFS21340.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
          Length = 1144

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1045 (37%), Positives = 622/1045 (59%), Gaps = 57/1045 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSLL+G   + + + +  + +  AIAITD  N+F ALEF QKA   G++PI
Sbjct: 4    FVHLHLHTEYSLLDGVGKIEDYMKRAKSLRMKAIAITDHGNMFGALEFYQKAQKYGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  ++I + +      +G+        ++LL    EGYQ L++L S  YL +      R
Sbjct: 64   IG--MEIYLSEYPLAEKKGRNF-----HLILLAENYEGYQNLMKLSSLAYL-EGFYYKPR 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA-EKRLLTFKKLFG-DRLYVNLQR 188
            +    L++  ++G+I L+   +G I       + +   E  +L ++ +FG +  Y+ +Q 
Sbjct: 116  LDKELLKKY-SKGIIALSACMNGEIASYILEGAEESKIEATILEYQDIFGKENFYLEVQA 174

Query: 189  HRGYDRYRESQVVQLAYTH----ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            H   +   + +V +  YT      +PLVATN++ ++++ ++   DV++ +   + +S + 
Sbjct: 175  H---EEIEQQKVNEALYTFGRKMNIPLVATNDTHYVNKGEHVLQDVIVCIQTGSHLSDEK 231

Query: 245  RPRV-TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R ++   D YLK+  EM ++  +   EAL+N+VEIA+RC   + +H    P +   E   
Sbjct: 232  RMKIEMQDLYLKSYEEMYAVLGEQYQEALQNSVEIAKRCQLWIPMHEFQFPDYNLPEG-- 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFLIV 360
            I   EE  L+     GL  R  QG         D R  +R+++EL++I +M ++GYF++V
Sbjct: 290  ISSLEEY-LKKLTYEGLGKRYPQGL--------DERIIERVEYELSIINKMGYAGYFVVV 340

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI +A+   IP+GPGRGS AGS+ AYAL IT +DPL + L+FERFLNP+R+SMPD DI
Sbjct: 341  WDFISFARSRKIPIGPGRGSAAGSLVAYALEITQLDPLEYHLIFERFLNPERISMPDIDI 400

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D CQ+RR E+I YV  KYG ++VAQI TFG+L+A+AA+RDVGR + +  +++D+  K IP
Sbjct: 401  DICQERRQEIIDYVVQKYGQDKVAQIATFGTLKARAAIRDVGRVMDVELAKIDKAAKCIP 460

Query: 481  NDPAHPVSLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                   SL+ + +++   +     D  +  ++  + ++E   RH STHAAG++I  + L
Sbjct: 461  ----MFASLKEVLEENIELKTMYQQDVELKNVINTAMRIENKVRHISTHAAGVLITKKSL 516

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
            ++ VP+Y D ++ +  TQ+ MK +E+ GL+K DFLGL+TLT+LQ++ D++ +  G K++L
Sbjct: 517  TESVPLYADSKNGIVSTQYQMKELEELGLLKIDFLGLRTLTILQRTQDYIEENTGKKIEL 576

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S IP  D   Y +L+   + G+FQ+ES G+R  L+ +QP+   DI+AL+SLYRPGP+ + 
Sbjct: 577  SEIPLQDKTVYEMLSKGDSFGVFQMESKGLRSILKRLQPNSFGDIVALLSLYRPGPLGSG 636

Query: 659  VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V  + +RK+GK+ I   HP ++ +LKET GVI+YQEQVM+IA +++ YSL EAD+LRRA
Sbjct: 637  MVDDFIDRKHGKKAIEYPHPSLEEVLKETYGVILYQEQVMKIANIMADYSLGEADLLRRA 696

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  E M + + +FI  + K G S+  A  IF+L+ KFA YGFNKSH+AAYA+I+Y T
Sbjct: 697  MGKKNVEIMHENRSKFIERSIKKGYSQEKAEEIFDLIDKFAGYGFNKSHSAAYALIAYWT 756

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A+ K HYP  F AA ++ E+ +++KI  +  DA+   ++I  P V  P   F V  ++I 
Sbjct: 757  AYCKVHYPKYFYAALLSSEISDIDKISFYFADAKAHGVEIETPDVQFPSSRFVVKGDKIL 816

Query: 837  YSLAAIKGVGT-TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            ++L+AIK VGT  + +   E      F S EDF  R+  + LN++ LE+ ++AGALD   
Sbjct: 817  FALSAIKNVGTGISEKIKEEREKKGEFRSYEDFVERMKKEGLNKKGLEAFIYAGALDSLS 876

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT---FSDKITLEKFSVENSSVRF 952
             +R + ++SLD +  Y Q   K    +  N+F   K     FS   T E++S+E   V  
Sbjct: 877  GNRHEKIESLDKVLDYVQRKAKADDIQQMNLFGDSKKNLVQFSLSRT-EEYSME---VLL 932

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR----LAAMVVSKQQKK 1008
            E E+  LGFY S +PLD Y+ + +        + +  I+  N+     L  ++ + ++ +
Sbjct: 933  EKEKEFLGFYVSANPLDQYESLYQSFDF----DELNLIKEENMEREVWLYGIIQNLKKTR 988

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T+KG  + +        +     FP
Sbjct: 989  TKKGDAMAFADLENYQGQIPMVIFP 1013


>gi|222823894|ref|YP_002575468.1| DNA polymerase III, alpha chain [Campylobacter lari RM2100]
 gi|222539116|gb|ACM64217.1| DNA polymerase III, alpha chain [Campylobacter lari RM2100]
          Length = 1197

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/1004 (38%), Positives = 590/1004 (58%), Gaps = 60/1004 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  L  +   + A    ++A+TD  N+F A++F +   A GI+PI
Sbjct: 4   FTHLHLHTEYSLLDGANKLKELAKTLKAQGATSVAMTDHGNMFGAIDFYKTMRAEGIKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  +   D++      +  F     + L      GY+ L+ L S+ Y+   G     
Sbjct: 64  IGLEAYLHNHDDIS-DKSSRQRF----HLCLFAKNEIGYKNLMYLSSQSYI--HGLYYYP 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180
                L E  ++GLI  +    G I        +R   F +   + A++  L +KK+FGD
Sbjct: 117 RINKKLLEAHSDGLICSSACLQGEINWHLNTKNERNIKFGAKGYEGAKEAALWYKKVFGD 176

Query: 181 RLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             Y+ + RH G D  ++ +  +++LA   ++ ++ATN++ +  +E   AH+V M +A   
Sbjct: 177 DFYLEIMRH-GIDDQKFIDDSIIKLAKELDIKIIATNDTHYTFKERAAAHEVFMCIAMGV 235

Query: 239 VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI- 296
            +    R R    + Y+K   +M  +F+D+PEA+ENT EIA +C+  L++  P  P F  
Sbjct: 236 KLDDPGRLRHEVHEFYVKTPEQMSELFADIPEAIENTQEIANKCNLELKLGDPTPPNFKF 295

Query: 297 ------EKECDDIQKEEENELRNKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDF 343
                 +   +  Q+++E    N  +        GLE RL    I +  H Q+Y+ RLD 
Sbjct: 296 TREYAKKYSLNLAQEDQEFSFDNDDIVFEYLCKKGLEERLQ--FIDESKH-QEYKDRLDL 352

Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
           E+++I  MKFSGY LIV DFI  AK+ +IPVGPGRGS AGS+ +Y L ITD+DP+ ++LL
Sbjct: 353 EISIIKNMKFSGYMLIVHDFIAAAKEKDIPVGPGRGSAAGSLVSYCLKITDLDPIPYNLL 412

Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           FERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG E+VAQ+ITFG L AK  +RDV R
Sbjct: 413 FERFLNPERVSMPDIDVDFCQDRRGEVIDYVIDKYGAEKVAQVITFGKLLAKGVIRDVAR 472

Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              M     D L KL+P +    +  +A   + +  E   + P   ++ + ++ LEGL R
Sbjct: 473 VCDMSIPDADALAKLVPEELKITLE-KAYEQEPKIAEFVNSHPKGRQVWDFAKALEGLNR 531

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581
           +A  HAAG+VI +  L    P++R  ++D    VTQ++ +++E   LIKFDFLGLKTLT+
Sbjct: 532 NAGLHAAGVVISNEALWNKAPLFRQSKNDERHLVTQYSKEYLEDVDLIKFDFLGLKTLTV 591

Query: 582 LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           +  ++  + +R G  V    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  
Sbjct: 592 IDNAIKLVKKRYGKDVIWEKIDMNDPKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
           ED+IA+++LYRPGP+D+ +V  + + K+G++        + P+L+ T GVI+YQEQVMQI
Sbjct: 652 EDLIAVLALYRPGPLDSGMVDDFIDIKHGRKAATYAFDDLKPILENTYGVIVYQEQVMQI 711

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            Q + G+SL  AD +RRAMGKK +E +D  K  ++ GA K G  +  A ++FEL+ KFA+
Sbjct: 712 VQKIGGFSLGGADNVRRAMGKKKREILDNLKAEYLEGAKKQGYDEKKADDLFELILKFAE 771

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E  NV+K+ K+ ++ ++ NI+++P
Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEESNVDKVAKYIEEMKRMNIKLLP 831

Query: 819 PSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
           PSVN    +F       G   I Y L AIK VG     +IM    ++ F   +DF S +D
Sbjct: 832 PSVNKAQREFSATKLEDGSEAIIYGLGAIKSVGIPAIENIMTIRKEEGFSDFDDFISSID 891

Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             K+N++ +E+L  +GA D FGY+R  L+ +L+ I + ++ + + + N   ++F  E+  
Sbjct: 892 PTKINKKTIENLAKSGAFDEFGYTRKCLVDNLELISETSRKIAEVKRNSTASLFGEEEIA 951

Query: 934 FSDKITLEKFSVENSSVRFE------NEQRVLGFYFSGHPLDVY 971
              K+ L      +S V FE       E+ +LG Y SGHPLD +
Sbjct: 952 ADIKVGL-----HDSKVEFELMEKLGYEKEILGIYVSGHPLDKF 990


>gi|291276386|ref|YP_003516158.1| DNA polymerase III subunit alpha [Helicobacter mustelae 12198]
 gi|290963580|emb|CBG39412.1| DNA polymerase III, alpha chain [Helicobacter mustelae 12198]
          Length = 1184

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/1067 (37%), Positives = 628/1067 (58%), Gaps = 61/1067 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+ HL +H+ YS+L+GA  + N++ ++      ++++TD  N+F A+EF +   A GI+P
Sbjct: 2    SYTHLHLHTEYSMLDGANKIKNLIQRLKELGMSSVSMTDHGNMFGAIEFYKSMKAEGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +   + L  + +GK  F     + L      GY+ L+  +S M  ++      
Sbjct: 62   IIGMEAYVHNYEELN-SKEGKQRF----HLCLYAKNEVGYKNLM-FLSSMAFIEGFYYYP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR-----------LLTFKKLF 178
            RI    L+E  +EGL+  +    G ++  F  N+S+  +KR            L ++ +F
Sbjct: 116  RISKKLLRE-HSEGLVASSACLGGEVN--FHLNTSERNKKRGAKGIEMAKEVALEYRDIF 172

Query: 179  GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            G+  Y+ + RH   +    +  +++++    + L+ATN++ ++S++D++  +V+  +   
Sbjct: 173  GEDFYLEIMRHGINHQENIDDLIIRISQETGIKLIATNDAHYISQKDHKMQEVVQTLGQG 232

Query: 238  TVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV-----HAPI 291
              ++  +R + T  + Y+K+  EM  IF+D+PEAL NT EI  +C+  +++     + P 
Sbjct: 233  KTLNDPNRLKHTVFEFYVKSSEEMERIFADIPEALRNTQEIVEKCNLEIELKDEKTNPPT 292

Query: 292  LPRFI-EKECDDIQKEE-ENE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
             P FI  KE   ++ +E +N+      K+  GLE  L    I +  H Q YR RL+ E+ 
Sbjct: 293  PPTFIFTKEYAKLEGQEIDNDADFFAYKSRQGLEEYLK--IIPQEKH-QIYRDRLEEEIR 349

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            +I +MKF GY LIV DFI +AK  NIPVGPGRGS AGS+ A+ L ITDIDP++++LLFER
Sbjct: 350  IITQMKFPGYMLIVWDFIHFAKSQNIPVGPGRGSAAGSLVAFCLKITDIDPMKYNLLFER 409

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPD D DFCQ RR EVI Y+  KYG   VAQ+ITFG L AK A+RDV R L 
Sbjct: 410  FLNPERVSMPDIDTDFCQRRRGEVIEYMIQKYGKYNVAQVITFGKLLAKNAIRDVARVLD 469

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
            MP    D   KLIPN     +   A A + +  E    +P    + E + +LEGL R+A 
Sbjct: 470  MPLKDADAFAKLIPNQLGIKLE-DAHALEPKIEEFMNQNPKARDVWEYALQLEGLNRNAG 528

Query: 527  THAAGIVI-GDRPLSQLVPMYRDVRSDLP-VTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             HAA IV+  ++ L    P+    +SD   VTQ++MK++E   LIKFDFLGLKTLT++  
Sbjct: 529  KHAAAIVLDSEKELWHKTPLCTVGKSDDSLVTQYSMKYLEPVDLIKFDFLGLKTLTVVHD 588

Query: 585  SLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +L+ + +R G ++D   +  DD + Y  + +  TLGIFQ+ESS  +   + ++P   EDI
Sbjct: 589  ALELIKKRYGKEIDFLSVDVDDKKVYETIQSGDTLGIFQIESSMFQGLNKRIKPSNFEDI 648

Query: 644  IALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            IA+++L RPGP+++ +V  + NRK+G E+I  +   ++P+LK T G I+YQEQVMQI Q 
Sbjct: 649  IAIIALGRPGPMESGMVDDFINRKHGLEEITYMFDALEPILKPTYGTIVYQEQVMQIVQT 708

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            + G+SL  AD++RRAMGKKIKEEM++ K  F +GA KNG  +  A +++EL+ KFA YGF
Sbjct: 709  IGGFSLGGADLVRRAMGKKIKEEMERLKSDFATGAEKNGFDRAKAEDLWELIVKFAGYGF 768

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NKSH+AAYA+I++QTA++KT+Y  EF+AA ++ E   +E + K+  + ++ ++  M P V
Sbjct: 769  NKSHSAAYAMITFQTAYLKTYYKEEFMAALLSSESGKIESVAKYINEVKKMDMDFMSPHV 828

Query: 822  NTPCVDFKV--------GDNRIYYSLAAIKGVGTTTARHIM---EASADKPFDSLEDFCS 870
            N    +F V        G  +I + L+AIKGVG    ++I+   E   D  F SLEDF S
Sbjct: 829  NISEKNFGVANFEHEGMGIKKIIFGLSAIKGVGDEPIQNIISVREKGGD--FKSLEDFIS 886

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RVD  K+ +RVLE L+ +G LD  GYSR  +L++LD I +  +  +K + +  + +F   
Sbjct: 887  RVDFSKITKRVLEPLIKSGGLDGLGYSRACMLKNLDAICEAGRRKDKAKESMAQGLFGGL 946

Query: 931  KGTFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
            +      +  +  + E   +R   + E   LG Y SGHPL+ Y+  +   G++G+  SV+
Sbjct: 947  EDEVEQNVRFDFSNFEEFPLRDLLDLEFECLGIYVSGHPLEEYRESIE--GLQGFVPSVS 1004

Query: 989  --TIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFF 1032
               +  ++  L A  VS+  +K  K ++  G+V   +   + E  FF
Sbjct: 1005 LGEVEEDSYCLIAGKVSEITRKMSKSNKPYGYVNLLDLYGKIEIMFF 1051


>gi|296184692|ref|ZP_06853103.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|296050474|gb|EFG89897.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
          Length = 1183

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1005 (37%), Positives = 596/1005 (59%), Gaps = 50/1005 (4%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           EK+  +V L  H+ YSLL+ +  +  ++ K       +IAITD   ++  ++F ++A   
Sbjct: 3   EKTYDWVSLHQHTGYSLLDSSAKIPELISKAKELGMKSIAITDHGVMYGCVDFYKEAKEQ 62

Query: 66  GIQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           GI+PIIGC++ +  +  ++K  ++    +     +VLLV    GY+ L+++VS+  + + 
Sbjct: 63  GIKPIIGCEVYVAGKSMHIKQNDKENENY----HLVLLVKNETGYKNLMKIVSKASV-EG 117

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                R    +L++  +EGLI L+    G I       +   A++  L +K +F D  Y+
Sbjct: 118 FYYKPRTDHDYLKK-HSEGLISLSACLGGEIQSYILKGNLSKAKEIALLYKDIFKDGFYL 176

Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            LQ H   ++ +   ++++++   ++PLVATN+  ++ +EDY+AHDVL+ +    VV+++
Sbjct: 177 ELQYHGMEEQEKVNEELIKMSKELDIPLVATNDVHYIKKEDYKAHDVLLCIQTGKVVNEE 236

Query: 244 DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           +R R   D  YLK+  EM  IFS +PEALENTV+IA +C+F  + H   LP+F   E   
Sbjct: 237 NRMRYPSDEFYLKSPEEMYKIFSRVPEALENTVKIAEQCNFDYEFHKSKLPKFPLPE--- 293

Query: 303 IQKEEENELRNKAVAGL-----------EVRLAQGAIAK----GYHAQDYRQRLDFELNV 347
              E    LR+    GL           EV  +  ++ +       A+   +RL++EL++
Sbjct: 294 -HVEPYEYLRDLCYKGLIQRYKEFEQLKEVSFSIESVNELADSNDEAKKLVERLEYELSI 352

Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
           I +M +  YFLIV DFI ++ +N I  GPGRGS AGS+ AY L IT IDP+++SLLFERF
Sbjct: 353 IKQMGYVDYFLIVWDFINFSVENGIMTGPGRGSAAGSIIAYTLGITKIDPIKYSLLFERF 412

Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
           LNP+R+SMPD D DFC +RR EVI YV  KYG   V+QIITFG++ A+A +RDVGRA+  
Sbjct: 413 LNPERVSMPDIDSDFCYERRGEVIDYVVRKYGENSVSQIITFGTMAARACIRDVGRAMNY 472

Query: 468 PYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
           PY++VDR+ K+IP  P   +++ +A+  +S   EA   +     L++I++ LEGL RH S
Sbjct: 473 PYAEVDRIAKMIPAAPGKAITIDKALELNSELEEAYENEERTKALIDIARALEGLPRHTS 532

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
           THAAG+VI  +PL   VPM ++   D  VTQF M  +E+ GL+K DFLGL+TLT+L+ ++
Sbjct: 533 THAAGVVIASQPLVNYVPMQKN--EDNIVTQFTMGTLEELGLLKMDFLGLRTLTVLRDAV 590

Query: 587 DFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             +   +G+ +DL  I +DD   Y ++    T+GIFQLES+GM   ++ ++PD +EDIIA
Sbjct: 591 SMVKDNKGINIDLDKIDYDDKNVYKMIGEGKTVGIFQLESAGMTSFMKELRPDSLEDIIA 650

Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +SLYRPGP+  I  Y + KN  E I  + P ++ +L  T G ++YQEQVM+I + L+GY
Sbjct: 651 GISLYRPGPMAEIPKYISNKNNPEGIEYLTPELESILGVTYGCMVYQEQVMEIVRKLAGY 710

Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFI------------SGASKNGISKTIAVNIFELL 753
           S+  +D++RRAM KK    M++++  FI             G  KNGIS+  A  IF+ +
Sbjct: 711 SMGRSDLVRRAMSKKKHHVMEEERHNFIYGIVDEEGVEKVPGCIKNGISEDAADKIFDSM 770

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             FA Y FNKSHAA+YAV+++QTA+M  +YP E++AA +     + EK+  + + A +  
Sbjct: 771 MDFASYAFNKSHAASYAVVAFQTAYMIHYYPTEYIAAMLNSVKGDNEKVAYYTRFADEIG 830

Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRV 872
           IQ++ P++N     F V +++I + L+AIK VG      I+++   K  F +L DFC+++
Sbjct: 831 IQVLTPNINESYAKFTVKEDKIRFGLSAIKNVGENVIDSIVKSRERKGVFSNLVDFCNKI 890

Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
           D   +N+RV+ESL+ AGA DCF   R +LL   + +        K   +   ++F   K 
Sbjct: 891 DVSCINKRVVESLIKAGAFDCFKVYRSKLLAVYEKVLDGVSNSRKKNIDGQLSLFTDFKK 950

Query: 933 TFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPIL 975
               ++ +E   ++    R     E+ + G Y SGHPL+ Y+  L
Sbjct: 951 I---EVKIEYPEIKEFEKRHILAMEKEMTGLYLSGHPLEEYEKSL 992


>gi|227824700|ref|ZP_03989532.1| DNA polymerase III [Acidaminococcus sp. D21]
 gi|226905199|gb|EEH91117.1| DNA polymerase III [Acidaminococcus sp. D21]
          Length = 1156

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/1024 (37%), Positives = 607/1024 (59%), Gaps = 42/1024 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +SLL+GA  + +++        PA+AITD   ++ A+EF Q+    GI+PI
Sbjct: 22   FVHLHTHTQFSLLDGACRIPDLVSYAKELGMPALAITDHGVMYGAIEFYQECVKQGIKPI 81

Query: 71   IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IGC++ I    +    M  +GK     +  ++LL     GYQ L++LVS +  ++     
Sbjct: 82   IGCEVYITSGSHTVKNMEARGK-----LYHLILLAENRTGYQNLMKLVS-IGQVEGFYYK 135

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             RI    L++   EGLI L+   +G + R       + AEK +L +  +FG D  Y+ +Q
Sbjct: 136  PRIDKQDLRKY-HEGLICLSACVAGEVARHIVRGEKETAEKVMLEYLDIFGRDHYYLEIQ 194

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H    ++    ++  LA  + + LVATN+  ++ ++D +  D+L+ +  +       R 
Sbjct: 195  NHGLPEEKAVADELHHLARKYNVKLVATNDLHYVHQDDAKGQDILLCIQTNARYLDPQRM 254

Query: 247  RVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R   D +YLK+RSEM ++F D  EAL+NT+EIA RC   L+    +LP F   E    + 
Sbjct: 255  RFNNDSYYLKSRSEMEALFPDDAEALDNTLEIADRCDLTLEFGHLLLPEFPLPEG---ET 311

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L+   V G + R  +   +        ++R+D+EL +I +M +SGYFLIV DFI 
Sbjct: 312  SMDAYLKKLCVKGFQERYPKDDGSA-------QKRMDYELGIIRQMGYSGYFLIVWDFIN 364

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            + + ++IPVGPGRGS AGS+ AY   ITDIDPL+++L+FERFLNP+R+SMPD D D C  
Sbjct: 365  YCRTHDIPVGPGRGSAAGSIVAYLTGITDIDPLKYNLIFERFLNPERVSMPDIDTDICYV 424

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            +R  V+ Y+ +KYG   VAQI+TFG+L AKAA++DVGR++++P + V ++ KLIPN P  
Sbjct: 425  KRHLVVDYLASKYGESHVAQIVTFGTLAAKAAIKDVGRSMEVPLNVVGQVNKLIPNTPG- 483

Query: 486  PVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +L++  + SR  ++    DPS+ +L++ + ++EG+ RH STHAAG+VI    L+  VP
Sbjct: 484  -TTLKSALEGSRDLQQLVQNDPSIAQLMDFAGRVEGMPRHTSTHAAGVVITPGELTNYVP 542

Query: 545  MYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
            +     SD       TQ++    E  GL+K D LGL+TLT++  ++  + + +G+K+D+ 
Sbjct: 543  LQITSTSDDDHEYICTQYDKDCSEALGLLKMDLLGLRTLTVIDDTVKMIEKNQGIKLDIH 602

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I  +D +T  +L    T  +FQ+ES GM + ++ + P+ + D+I LV+LYRPGP+ + +
Sbjct: 603  HIDLEDPKTCQMLCAGDTAAVFQMESDGMTRLMKELGPESMADLIPLVALYRPGPLGSGM 662

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
               +   ++GK     +HPL++P++ +T GVI+YQEQVMQI  +L G+SL EAD+LRRAM
Sbjct: 663  AEDFIAGRHGKRTARVLHPLMEPIVADTYGVILYQEQVMQIVSVLGGFSLGEADILRRAM 722

Query: 718  GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            GKK  + +D  KE+F++GA++ + IS+ +   IF LL  FA YGFNKSH+AAYA+++YQT
Sbjct: 723  GKKKAKLLDSMKEKFLAGAAREHQISRQLGEEIFALLQHFAGYGFNKSHSAAYALVAYQT 782

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K +YPVE++AA +   +   EK+  +    R   I+++PP +N+    F V  + + 
Sbjct: 783  AYLKANYPVEYMAAFLNSVITVAEKVSWYISVCRDMGIKVLPPDINSSEAAFSVDGDNVR 842

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            + L AIK VG T    I+ E      F    DF SRVD  K+N+RV+E+L+ +G++D FG
Sbjct: 843  FGLGAIKSVGETAVAVILKERERHGLFKDFFDFASRVDLTKVNKRVVENLIKSGSMDTFG 902

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS--VENSSVRFE 953
            Y R QLL  +D     A   + +R     ++F  +    +  I +       ++  +R E
Sbjct: 903  YRRRQLLAIMDRALDAAAQDQHDRMTGQLSLFGGDTRQSAAAIPIPDLPEIPKDEVLRLE 962

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKM-GI-KGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
             E  ++GFY +GHPLD ++ +L  M GI +  EE      G  + +  ++   + + T+K
Sbjct: 963  KE--LIGFYVTGHPLDAFRKVLSSMTGIARCTEEHYHD--GERVTVGGLITGVRIRSTKK 1018

Query: 1012 GSRI 1015
            G R+
Sbjct: 1019 GERM 1022


>gi|228917242|ref|ZP_04080799.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            pulsiensis BGSC 4CC1]
 gi|228842443|gb|EEM87534.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            pulsiensis BGSC 4CC1]
          Length = 1105

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/1032 (36%), Positives = 608/1032 (58%), Gaps = 61/1032 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PII
Sbjct: 1    MHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPII 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   I
Sbjct: 61   GLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               WL     +GLI ++ G  G I++    +    AE+    ++ +FG+  Y++LQ H  
Sbjct: 106  PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGN-FYMSLQHHAI 163

Query: 192  YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             D    + ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  
Sbjct: 164  QDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223

Query: 251  D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F       +   E N
Sbjct: 224  DQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNETN 277

Query: 310  E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++A
Sbjct: 278  DMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RR
Sbjct: 331  HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRR 390

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +
Sbjct: 391  DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448

Query: 488  SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V + 
Sbjct: 449  TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+ G ++D+  +P  D
Sbjct: 508  QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQD 567

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K
Sbjct: 568  EKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +
Sbjct: 628  HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +
Sbjct: 688  DQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +
Sbjct: 748  EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL
Sbjct: 808  GMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSL 867

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961
                +YA               A + G   D +   K+ V+   + F      E+ VLGF
Sbjct: 868  KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLGF 910

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF 
Sbjct: 911  YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITFC 969

Query: 1022 EPAKEYEANFFP 1033
            +   E EA  FP
Sbjct: 970  DQNDEMEAVLFP 981


>gi|320529018|ref|ZP_08030110.1| DNA polymerase III, alpha subunit [Selenomonas artemidis F0399]
 gi|320138648|gb|EFW30538.1| DNA polymerase III, alpha subunit [Selenomonas artemidis F0399]
          Length = 1130

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/1039 (37%), Positives = 605/1039 (58%), Gaps = 40/1039 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+GA  +  ++ +       ++AITD   ++ A+ F ++A A GI P
Sbjct: 2    SFVHLHVHTEYSLLDGASRIKELVQRTKELGMDSVAITDHGVMYGAIAFYKEAMAQGIHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  Q   +        +     ++LL     GY+ L+ LVS +  ++      
Sbjct: 62   IIGCEVYVAPQSRHERAEVDGVRYY---HLILLAENEIGYRNLVRLVS-LANIEGYYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L++   EG+I L+   +G I R+      +  ++ L  +  +FG D  ++ LQ 
Sbjct: 118  RVDKDLLRQY-HEGIIALSACVAGEIPRSILRGDPERTDEILAEYVDIFGRDNFFLELQD 176

Query: 189  HRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    +  ++ L+  H++ LVATN+  ++  ED E HD+L+ V     ++  +R R
Sbjct: 177  HGLPEEKTVNHALRDLSKKHDIGLVATNDIHYVRAEDSEFHDILLCVQTGRTINDPNRMR 236

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKECDDI 303
             + PD+YLK+ +EM ++F D P A+ENT +IA RC       ++  P  P   EK  DD 
Sbjct: 237  FSGPDYYLKSEAEMTALFHDYPGAVENTAKIAARCRVDFTFGELQLPFYP-IPEKFADD- 294

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                +  LR      L  R ++          + R RLD+EL VI  M ++ YFLIV DF
Sbjct: 295  ----DAYLRTLCEERLPERYSE-------ITNEIRSRLDYELGVIHGMGYASYFLIVWDF 343

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I +A+ + + VGPGRGS AGS+ AY L IT+IDPLR++LLFERFLNP+R+SMPD DIDF 
Sbjct: 344  INYARGHGVAVGPGRGSAAGSIVAYLLGITNIDPLRYALLFERFLNPERVSMPDIDIDFD 403

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
               R  VI YV+ +YG + VAQI TFG++ AK A+RDVGR L+M +S+V  + KL+P++ 
Sbjct: 404  DINRGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVGRVLEMSFSEVSNITKLVPSEL 463

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A+ + + FR     D SV R++++++K+EGL R+ S HAAG+VI   PL+  V
Sbjct: 464  NITID-RALKESADFRRLYDEDESVRRVIDLARKIEGLPRNTSIHAAGVVIAKEPLTNHV 522

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIP 602
            P++  +     VT+F+   +E  GL+K DFLGL+TL++++ +L +     G+ +D+  IP
Sbjct: 523  PVW--ISEGTLVTEFDKDDVEALGLLKMDFLGLRTLSIIEDALKNIRTSHGIDIDIDNIP 580

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             +D  T  +L    T  +FQ+ES+GM   ++ +QP    D+I  V+LYRPGP+ + +V  
Sbjct: 581  LEDDLTAQMLCDGDTGAVFQMESAGMTNLVKDLQPKGFVDLIPTVALYRPGPLGSGMVTD 640

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + +  +GK+++V +HPL+ P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK
Sbjct: 641  FIDGLHGKKEVVYMHPLLAPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKK 700

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              E +  QKE F++G + NGI   +A +IF+LL  FADYGFNKSH+A+Y ++++QTA++K
Sbjct: 701  KHELLMAQKESFLAGCANNGIDAPLANHIFDLLTHFADYGFNKSHSASYGLLAWQTAYLK 760

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEF+A  +T  MD  +KI  + +   Q  I+I+PP +N+    F +    I + LA
Sbjct: 761  AHYPVEFMAGVLTSIMDKTDKIPVYIRLCHQMKIRILPPDINSSAATFSIESGAIRFGLA 820

Query: 841  AIKGVG---TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            A++ VG        H+ E     PF SL DFC+RVD + LN+R +ESL+  GA D  G  
Sbjct: 821  AVRNVGENAIAVLEHVREEGG--PFRSLVDFCTRVDLRILNKRAIESLIKCGAFDSLGID 878

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQ 956
            R  LL SL+     A   +++  +    +F  E      +I   +   +     R   E+
Sbjct: 879  RNHLLASLNAAVTDAARRQRDLLSGQIGLFGDEAMAEIQQIGDFDDVPLCTPRERLTWEK 938

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSR 1014
               GFY +GHPL+  +  L  +   G  +  A +R +   +R+  ++ S ++  T+KG  
Sbjct: 939  EATGFYITGHPLEDNQETLSHLQPIG--QIAAAVRRDRQLMRVGGILTSTKRFTTKKGDT 996

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + +    +     E   FP
Sbjct: 997  MLFADLEDFTGTLEVTVFP 1015


>gi|87302218|ref|ZP_01085043.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 5701]
 gi|87283143|gb|EAQ75099.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 5701]
          Length = 1179

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/1081 (37%), Positives = 601/1081 (55%), Gaps = 90/1081 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++  A   PA+A+TD   ++ A+E  +   AAGI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPQMVERAVALGMPALALTDHGVMYGAIELLKLCQAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPS-----IVLLVSTAEGYQRLIELVSRMYLLDQ 124
            IIG         N      G    P V       +V+L     GY+ L++L S  +L   
Sbjct: 62   IIG---------NEMYVINGSIDDPWVKGERRYHLVVLAKNDTGYRNLVKLTSLSHLRGM 112

Query: 125  GKQSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
              + +  R C+   L E   EGLI+ T    G I +A       VA      + + FG  
Sbjct: 113  RGRGIFSRACIDKQLLEQHREGLILATACLGGEIPQAILKGRQDVARDVARWYHQRFGAD 172

Query: 182  LYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ +Q H    DR    ++V++A    + L+ATN++ +LS  D EAHD L+ V    +V
Sbjct: 173  FYLEIQDHGSPEDRIVNVELVRIARELGIELIATNDAHYLSSADVEAHDALLCVLTGKLV 232

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPR 294
            + + R R T   Y+K+ +EM  +F+D      + EA+ NT  +A +      +    +PR
Sbjct: 233  TDEKRLRYTGTEYIKSEAEMGRLFADHLEPEVVAEAIANTAAVAEKVEAYDILGRQQMPR 292

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVIA 349
            F   +         + L   + AGL  RL  G+        D     Y +RL FEL V+ 
Sbjct: 293  FPIPD----GHTAVSYLAEVSEAGLRQRLHLGS-------SDPIDPLYGERLAFELQVME 341

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F  YFL+V D+I++A++  IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLN
Sbjct: 342  QMGFPTYFLVVWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLN 401

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R SMPD D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY
Sbjct: 402  PERKSMPDIDTDFCIERRGEVIEYVTQRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPY 461

Query: 470  SQVDRLCKLIPNDPAHPVSL-QAIADDS---RFREARLADPSVDRLLEISQKLEGLYRHA 525
               DRL KLIP     P  L + I  +S    FRE    D  V R +++++++EG  +  
Sbjct: 462  GDADRLAKLIPVVRGKPAKLKEMIGPESPAPEFREKYENDAQVRRWVDMARRIEGTNKTF 521

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
              HAAG+VI   PL  LVP+ R+    + +TQ+ M+ +E  GL+K DFLGLK LT++ K+
Sbjct: 522  GVHAAGVVIAAEPLDSLVPLQRNNDGQV-ITQYFMEDVEAMGLLKMDFLGLKNLTMIDKT 580

Query: 586  LDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            LD + Q  G ++D   +P  D +T+ LL      GIFQLESSGMRQ +  ++P  +EDI 
Sbjct: 581  LDLVEQCSGERIDPDDLPPCDDDTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDIS 640

Query: 645  ALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++++LYRPGP+D  ++  + NRK+G+E I    P ++P+LKET G+++YQEQ+M+IAQ L
Sbjct: 641  SILALYRPGPLDAGLIPKFINRKHGREAIDFACPALEPILKETYGIMVYQEQIMRIAQDL 700

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +GYSL EAD+LRRAMGKK   EM K + +F+ GA+  G+S  +A  +FE +  FA+Y FN
Sbjct: 701  AGYSLGEADLLRRAMGKKKVSEMQKHRSQFVEGATARGVSAAVAEALFEQMVLFAEYCFN 760

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            KSH+ AY  ++YQTA++K HYPV ++AA +T+   + +K++++  + +   I++MPP +N
Sbjct: 761  KSHSTAYGAVTYQTAYLKAHYPVAYMAALLTVNASSTDKVQRYIANCQAMGIEVMPPDLN 820

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRV 881
               +DF     +I + L+A++ +G    R ++EA   D PF SL D C R+ +  +NRR 
Sbjct: 821  ASGIDFTPKGEKILFGLSAVRNLGDGAIRQLLEARVQDGPFASLADLCDRIPTTLMNRRA 880

Query: 882  LESLVFAGALDCFGYS--RMQLLQSLDNIQKYAQWVEKNRTNKHENIF------------ 927
            LESL+  GALD    S  R QL+  LD +  +A    ++R +   N+F            
Sbjct: 881  LESLIHCGALDGLEPSANRAQLMADLDLVLDWASSRARDRASGQGNLFDLFATPGEAAGS 940

Query: 928  ------------AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL-DVYKPI 974
                        A +    +D    EK  +         E+ ++GFY S HPL  + +PI
Sbjct: 941  AAAEPGPANQSTAPKAAPVADYPPKEKLRL---------EKELVGFYLSDHPLRQLARPI 991

Query: 975  --LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              L  + +   EE     R   + + AM+   +Q  TRKG R+  +   + +   E   F
Sbjct: 992  RMLSPISLGRLEEQADKAR---VSVVAMLPEVRQVTTRKGDRMAVLQLEDLSGSAECVVF 1048

Query: 1033 P 1033
            P
Sbjct: 1049 P 1049


>gi|229192805|ref|ZP_04319763.1| DNA polymerase III subunit alpha [Bacillus cereus ATCC 10876]
 gi|228590644|gb|EEK48505.1| DNA polymerase III subunit alpha [Bacillus cereus ATCC 10876]
          Length = 1105

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/1032 (36%), Positives = 608/1032 (58%), Gaps = 61/1032 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+I
Sbjct: 1    MHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVI 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   I
Sbjct: 61   GLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H  
Sbjct: 106  PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAI 163

Query: 192  YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             D    + ++ +      + +VATN+  ++++ D   H+ L++V   T ++  DRPR+  
Sbjct: 164  QDELLLQEKLPEFISRVNISVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223

Query: 251  D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKEE 307
            D +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     E  DI    
Sbjct: 224  DQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY--- 280

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     GL  R  +    K  H +    RLD ELNVI+RM FS YFLIV DF+++A
Sbjct: 281  ---LRRVCEEGLRKRYGE---PKEVHIK----RLDHELNVISRMGFSDYFLIVWDFMKYA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +N I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RR
Sbjct: 331  HENYILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRR 390

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +
Sbjct: 391  DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448

Query: 488  SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V + 
Sbjct: 449  TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D
Sbjct: 508  QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQD 567

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K
Sbjct: 568  EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +
Sbjct: 628  HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D++++ F+ G   NG ++T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +
Sbjct: 688  DQERKHFVQGCLGNGYNETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +
Sbjct: 748  EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+
Sbjct: 808  GMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSI 867

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961
                +YA               A + G   D +   K+ V+   + F      E+  LGF
Sbjct: 868  KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALGF 910

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF 
Sbjct: 911  YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITFC 969

Query: 1022 EPAKEYEANFFP 1033
            +   E EA  FP
Sbjct: 970  DQNDEMEAVLFP 981


>gi|251778887|ref|ZP_04821807.1| DNA polymerase III subunit alpha [Clostridium botulinum E1 str. 'BoNT
            E Beluga']
 gi|243083202|gb|EES49092.1| DNA polymerase III subunit alpha [Clostridium botulinum E1 str. 'BoNT
            E Beluga']
          Length = 1202

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/1004 (38%), Positives = 582/1004 (57%), Gaps = 59/1004 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSLL+G+  +  I+ K       +IAITD   L+  ++F + A   GI+PI
Sbjct: 19   FVHLHLHTGYSLLDGSGKIKEIMAKTKELGMNSIAITDHGVLYGLVDFYKAAIEYGIKPI 78

Query: 71   IGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +GC++ +  +   +K  ++  + +     +VLLV    GY+ L+++VS   + +      
Sbjct: 79   LGCEVYVAGKSMKIKQPDKDNSTY----HLVLLVKNEIGYRNLMKIVSTASI-EGFYYKP 133

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+   +L+   ++G+I L+    G +       + + A++  L +K++F +  Y+ +Q H
Sbjct: 134  RVDHEYLKA-HSDGIIALSACLGGEVQSHELKGNYEKAKETALLYKEIFKENFYLEIQNH 192

Query: 190  RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             G D  R+     +  + EL  PLVATN+  +L ++ Y++HD+LM +     V   +R R
Sbjct: 193  -GMDEQRKVNEENIKLSKELGIPLVATNDVHYLKKDGYKSHDILMCIQTGKTVDDVNRRR 251

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  YLK+  EM  +FS +PEALENTV+I+ +C++  + H   LP+F   E +    E
Sbjct: 252  YPSDQFYLKSPEEMWEMFSYIPEALENTVKISEQCNYEYKFHESKLPKFPLPEGE----E 307

Query: 307  EENELRNKAVAGLEVRLAQ---------------GAIAKGYHAQDYRQRLDFELNVIARM 351
              N L+N    GL  R  +                  +K    ++   RL++EL +I +M
Sbjct: 308  PYNYLKNTCYMGLIERYEEFKEFRGKDLNYDKLDDLKSKNDSVKELIDRLEYELQIIKQM 367

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             +  YFLIV DFI++A  N IP GPGRGS AGS+ AY L IT IDP+++SL+FERFLNP+
Sbjct: 368  GYIDYFLIVWDFIKFANDNGIPTGPGRGSAAGSIIAYTLGITKIDPIKYSLIFERFLNPE 427

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD D DFC +RR EVI YV  KYG + V+QIITFG++ A+A +RDVGRA+   YS+
Sbjct: 428  RVSMPDIDSDFCYERRQEVIDYVVEKYGEDNVSQIITFGTMAARACIRDVGRAMNYSYSE 487

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            VD++CK+IP      +  +A+  +   +E    D  V  L+++S+ LEGL RH+STHAAG
Sbjct: 488  VDKICKMIPTMLGITIE-KALDFNPELKEIYDKDDRVKSLIDMSKDLEGLPRHSSTHAAG 546

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI   PL Q VP+ ++   ++ VTQF M  +E+ GL+K DFLGL+TLT++ ++L  + +
Sbjct: 547  VVIASTPLVQYVPLQKN--DEMIVTQFGMTTLEELGLLKMDFLGLRTLTVMNEALKIIKE 604

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
             R + +DL  I F+D E Y ++    T G+FQLES GM   ++ ++PD +EDIIA +SLY
Sbjct: 605  NRNIDIDLDKIDFEDKEVYKMIGEGKTAGVFQLESPGMVSFMKELKPDSLEDIIAGISLY 664

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+  I  Y   K   EK+    P ++ +L  T GV++YQEQVM+I + L+GYS+  +
Sbjct: 665  RPGPMAEIPRYIECKRNPEKVKYEAPELEEILDVTYGVMVYQEQVMEIVRKLAGYSMGRS 724

Query: 711  DVLRRAMGKKIKEEMDKQKERFIS-----------GASKNGISKTIAVNIFELLAKFADY 759
            D++RRAM KK  + M+++++ FI            G  +NGIS+  A  IF+ +  FA Y
Sbjct: 725  DMVRRAMSKKKHKVMEEERKNFIHGIIENDEVVVPGCIRNGISEEAANKIFDNMMDFASY 784

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSHAAAYAV+ YQTA++  +YPVE +AA +   M + EK+  +   A +  IQ++PP
Sbjct: 785  AFNKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSFMGSSEKVVYYISKAEELGIQVLPP 844

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878
             +N     F V    I + LAAIK VG      +++   +K  FDSL DF S++D   +N
Sbjct: 845  DINESFAKFTVKGETIRFGLAAIKNVGMNLINSVVKTRENKGKFDSLFDFISKIDLSAIN 904

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            +R +ESL+ +G  D F   R +LL        Y + V+    ++  NI        SD I
Sbjct: 905  KRTIESLIKSGTFDSFKIYRSKLLAV------YEKMVDSISNDRKRNIDGQISLFASDDI 958

Query: 939  TLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILR 976
             + +    N +  F+       E+ + G Y SGHPLD Y   L+
Sbjct: 959  YVPEIEYPNIN-EFDKRSLLTMEKEMTGLYISGHPLDDYAQSLK 1001


>gi|228929651|ref|ZP_04092669.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
 gi|228830038|gb|EEM75657.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
          Length = 1105

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/1032 (36%), Positives = 608/1032 (58%), Gaps = 61/1032 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PII
Sbjct: 1    MHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPII 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   I
Sbjct: 61   GLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               WL     +GLI ++ G  G I++    +    AE+    ++ +FG+  Y++LQ H  
Sbjct: 106  PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGN-FYMSLQHHAI 163

Query: 192  YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             D    + ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  
Sbjct: 164  QDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223

Query: 251  D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F       +   E N
Sbjct: 224  DQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNETN 277

Query: 310  E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++A
Sbjct: 278  DMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RR
Sbjct: 331  HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRR 390

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +
Sbjct: 391  DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448

Query: 488  SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V + 
Sbjct: 449  TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+ G ++D+  +P  D
Sbjct: 508  QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQD 567

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K
Sbjct: 568  EKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +
Sbjct: 628  HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +
Sbjct: 688  DQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+ A ++  + N +K+ ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +
Sbjct: 748  EFMTALLSSAIGNEDKVVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL
Sbjct: 808  GMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSL 867

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961
                +YA               A + G   D +   K+ V+   + F      E+ VLGF
Sbjct: 868  KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLGF 910

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF 
Sbjct: 911  YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITFC 969

Query: 1022 EPAKEYEANFFP 1033
            +   E EA  FP
Sbjct: 970  DQNDEMEAVLFP 981


>gi|228987852|ref|ZP_04147961.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            tochigiensis BGSC 4Y1]
 gi|228771900|gb|EEM20357.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            tochigiensis BGSC 4Y1]
          Length = 1105

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/1032 (36%), Positives = 608/1032 (58%), Gaps = 61/1032 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PII
Sbjct: 1    MHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPII 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   I
Sbjct: 61   GLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               WL     +GLI ++ G  G I++    +    AE+    ++ +FG+  Y++LQ H  
Sbjct: 106  PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFGN-FYMSLQHHAI 163

Query: 192  YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  
Sbjct: 164  QDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223

Query: 251  D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F       +   E N
Sbjct: 224  DQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPANETN 277

Query: 310  E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++A
Sbjct: 278  DTYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RR
Sbjct: 331  HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRR 390

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +
Sbjct: 391  DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448

Query: 488  SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V + 
Sbjct: 449  TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+ G ++D+  +P  D
Sbjct: 508  QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQD 567

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K
Sbjct: 568  EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +
Sbjct: 628  HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +
Sbjct: 688  DQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +
Sbjct: 748  EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL
Sbjct: 808  GMATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSL 867

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961
                +YA               A + G   D +   K+ V+   + F      E+ VLGF
Sbjct: 868  KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLGF 910

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF 
Sbjct: 911  YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITFC 969

Query: 1022 EPAKEYEANFFP 1033
            +   E EA  FP
Sbjct: 970  DQNDEMEAVLFP 981


>gi|229087161|ref|ZP_04219310.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-44]
 gi|228696133|gb|EEL48969.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-44]
          Length = 1109

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/1030 (36%), Positives = 611/1030 (59%), Gaps = 54/1030 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HLQ  + +SLL+ A  ++ I+ +       ++AITD N ++  + F +     GIQPI
Sbjct: 3    FAHLQCQTVFSLLKSACKIDEIVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSGEEEGTYP----LVLLAENEIGYQNLLKISSA--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GL+ ++ G  G I++       ++AE+    ++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLVAISPGKDGEIEQLLLQGRDELAEEVARAYQNMFGS-FYMSLQHHA 165

Query: 191  GYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D  + + ++ Q A    +P+VATN+  ++++ D    + L++V   T ++  DRPR+ 
Sbjct: 166  IQDELFLQEKLPQFASEIGIPMVATNDVRYVNQSDALVQECLLSVQGGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +YLK+ +EM ++FS   EAL+NTV IA RC   +      LP+F       +   E 
Sbjct: 226  TDQYYLKSSAEMGALFSHEEEALQNTVRIAERCHVEIPFQVNQLPKF------PVPSNET 279

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            ++  LR     GL+ R A   + +  H    R+RL+ EL VI+RM FS YFLIV DF+++
Sbjct: 280  SDAYLRRICDEGLQKRYA---VIETVH----RERLNHELAVISRMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +++I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHEHDILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P  ++D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGPLRVAQIVTFGTLAAKAAIRDIARVMGLPPREIDIFSKLIPSKIG-- 450

Query: 487  VSLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S   RE    +   +R+ EI++++EG+ RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKEAYEESVPLREFVQGNLLHERVFEIAKRVEGMPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+  + +E+ GL+K DFLGL+ LTLL+  LDF+  + G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPAEVLEELGLLKMDFLGLRNLTLLENILDFIVTKTGKQIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L  ++P+  EDI+A+ +LYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRSLKPNEFEDIVAVNALYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK +I  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK +E 
Sbjct: 630  KHGKCQIQYLHPDLKPILENTYGVIVYQEQIMQIASRLAGFSLGEADLLRRAVSKKNREI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP
Sbjct: 690  LDQERKHFVQGCLRNGYDETAAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYP 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++   +++PPS++    +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFRVLPPSLHRSSYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E     PF  L +FC R+ +K +  R LE+ ++AG  D F  SR  L  S
Sbjct: 810  IGMATVTAVIEERERNPFQDLFEFCLRMPAKFVTERNLEAFIWAGCFDDFQVSRTTLFNS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-RFENEQRVLGFYF 963
            +    +YA               A E G  S   ++     E S + +  NE+  LGFY 
Sbjct: 870  MKGALEYAS-------------LARELGEESVPKSVYVQGEELSFIEQLNNEKEALGFYL 916

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S +P   Y  +++++ I    +++   R    R    +   +  +T+K  ++ ++TF + 
Sbjct: 917  SSYPTAQYAKLVKELEIPSIAQAMRQKRKVQ-RAIVYITGVKVIRTKKMQKMAFITFCDQ 975

Query: 1024 AKEYEANFFP 1033
              E EA  FP
Sbjct: 976  NDEMEAVVFP 985


>gi|229099065|ref|ZP_04229999.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-29]
 gi|228684293|gb|EEL38237.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-29]
          Length = 1108

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/1033 (36%), Positives = 608/1033 (58%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEEKSYP----LVLLAEDEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+   T++ +F D  Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKEDQAEEVACTYQNMF-DNFYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISKVNVPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +YLK+  EM ++FS   EA+ NTV+IA RC   +  H   LP+F       +   E 
Sbjct: 226  TDQYYLKSSDEMEALFSHTEEAIYNTVKIAERCKVEIPFHVNQLPKF------PVPSNET 279

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            N+  LR     GL  R        G   + + +RL+ ELNVI+ M FS YFLIV DF+++
Sbjct: 280  NDTYLRRACEEGLHKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ ++ G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERQHFVQGCLRNGYDETSADKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ +K +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEERESKMFEDLFEFCLRMPAKFVTERNLEAFVWSGCFDDFGISRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            L    +YA               A + G   D +   K+ V+   + F      E+  LG
Sbjct: 870  LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRNKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVVFP 984


>gi|229076107|ref|ZP_04209075.1| DNA polymerase III subunit alpha [Bacillus cereus Rock4-18]
 gi|228706970|gb|EEL59175.1| DNA polymerase III subunit alpha [Bacillus cereus Rock4-18]
          Length = 1108

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/1033 (36%), Positives = 609/1033 (58%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKYGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEEKSYP----LVLLAEDEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +YLK+  EM ++FS   EA+ NTV+IA RC   +  H   LP+F       +   E 
Sbjct: 226  TDQYYLKSSDEMEALFSHTEEAIYNTVKIAERCKVEIPFHVNQLPKF------PVPSNET 279

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            N+  LR     GL  R        G   + + +RL+ ELNVI+ M FS YFLIV DF+++
Sbjct: 280  NDTYLRRVCEEGLHKRY-------GAPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ ++ G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERQHFVQGCLRNGYDETSADKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ +K +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEERESKMFEDLFEFCLRMPAKFVTERNLEAFVWSGCFDDFGISRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            L    +YA               A + G   D +   K+ V+   + F      E+  LG
Sbjct: 870  LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRNKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVVFP 984


>gi|153941212|ref|YP_001392730.1| DNA polymerase III DnaE [Clostridium botulinum F str. Langeland]
 gi|152937108|gb|ABS42606.1| DNA polymerase III, alpha subunit [Clostridium botulinum F str.
            Langeland]
 gi|295320711|gb|ADG01089.1| DNA polymerase III, alpha subunit [Clostridium botulinum F str.
            230613]
          Length = 1185

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/1076 (35%), Positives = 623/1076 (57%), Gaps = 57/1076 (5%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q+ EK P +V L  H+ YSLL+ +  +++++ +       +IAITD   ++  ++F ++
Sbjct: 4    NQFDEKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKE 63

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   GI+PIIGC++ +    ++ +  Q K        +VLLV    GY+ L+E+VS   +
Sbjct: 64   AIKQGIKPIIGCEIYV-ASKSMYIKQQDKEN--ETHHLVLLVKNEIGYKNLMEIVSNASV 120

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             +      R+   +L++  +EGLI L+    G +       + + A +  L +K +F + 
Sbjct: 121  -EGFYYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAGEVALIYKDIFKEG 178

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ LQ H   ++ + ++ +V+++   ++PLVATN+  ++ +EDY++HD+L+ +     V
Sbjct: 179  FYLELQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTV 238

Query: 241  SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEK 298
             +++R R   D  YLK+  EM   FS +PEALENTV+I+  C+F    H   LP+F +E+
Sbjct: 239  EEENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEE 298

Query: 299  ECDDIQKEEENELRNKAVAGLEVR--LAQGAIAKGY-------------HAQDYRQRLDF 343
              D  +      LR     GL +R  + +  I K +              A D  +RL++
Sbjct: 299  GVDPYEY-----LRKICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNY 353

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL++I +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+
Sbjct: 354  ELSIIKQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLI 413

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNPDR+SMPD D DFC +RR EVI YV  KYG   V+QIITFG++ A+A +RDVGR
Sbjct: 414  FERFLNPDRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDVGR 473

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            A+  PY++VDR+ K+IP      ++ +A+  +   +EA   +  V  L+++++ LEGL R
Sbjct: 474  AMNYPYAEVDRIAKMIPTVLNITIN-KALELNPELKEAYDNEERVKALIDVARALEGLPR 532

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
            H STHAAG+VI  + L   VP+ ++  S   VTQF M  +E+ GL+K DFLGL+TLT+++
Sbjct: 533  HTSTHAAGVVIASQSLVNYVPLQKNEES--IVTQFTMGTLEELGLLKMDFLGLRTLTVMR 590

Query: 584  KSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             ++  + + +G+ +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +ED
Sbjct: 591  DAVRIIKENKGIDIDLDTIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLED 650

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            IIA +SLYRPGP+  I  Y   KN    I      ++P+L  T   I+YQEQVMQI + L
Sbjct: 651  IIAGISLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDL 710

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFI--------SGASKNGISKTIAVNIFELLA 754
            +GYS+  +D++RRAM KK  + M++++  FI         G   NGI + +A ++F+ + 
Sbjct: 711  AGYSMGRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMM 770

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNKSHAAAYAV+ +QTA++  +YP EF+AA +     + +K+  +   A+   I
Sbjct: 771  DFASYAFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGI 830

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873
            +I+ P++N    +F V DNRI + L A+K VG     +I+ +   K  F  L DF ++VD
Sbjct: 831  EIIAPNINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVD 890

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +  +N+R++ESL+ AGA DC    R ++L   + I    Q  ++N      N+F      
Sbjct: 891  TSIINKRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDN 950

Query: 934  FSDKITLEKFSVENSSVRF--ENEQRVLGFYFSGHPLDVYKPILR------------KMG 979
                I ++  +++    ++  + E+ + G YFSGHPL+ Y+  L+            K  
Sbjct: 951  KESSIDIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKES 1010

Query: 980  IKG-YEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++G   +++++I+ G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1011 LEGNLVDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|229158207|ref|ZP_04286274.1| DNA polymerase III subunit alpha [Bacillus cereus ATCC 4342]
 gi|228625165|gb|EEK81925.1| DNA polymerase III subunit alpha [Bacillus cereus ATCC 4342]
          Length = 1105

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/1032 (36%), Positives = 608/1032 (58%), Gaps = 61/1032 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PII
Sbjct: 1    MHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPII 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   I
Sbjct: 61   GLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               WL     +GLI ++ G  G I++    +    AE+    ++ +FG+  Y++LQ H  
Sbjct: 106  PKKWLVHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFGN-FYMSLQHHAI 163

Query: 192  YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  
Sbjct: 164  QDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223

Query: 251  D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F       +   E N
Sbjct: 224  DQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPANETN 277

Query: 310  E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++A
Sbjct: 278  DTYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RR
Sbjct: 331  HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRR 390

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +
Sbjct: 391  DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448

Query: 488  SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V + 
Sbjct: 449  TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+ G ++D+  +P  D
Sbjct: 508  QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQD 567

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K
Sbjct: 568  EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +
Sbjct: 628  HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +
Sbjct: 688  DQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +
Sbjct: 748  EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL
Sbjct: 808  GMATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSL 867

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961
                +YA               A + G   D +   K+ V+   + F      E+ VLGF
Sbjct: 868  KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLGF 910

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF 
Sbjct: 911  YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITFC 969

Query: 1022 EPAKEYEANFFP 1033
            +   E EA  FP
Sbjct: 970  DQNDEMEAVLFP 981


>gi|145588791|ref|YP_001155388.1| DNA polymerase III, alpha subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047197|gb|ABP33824.1| DNA polymerase III, alpha subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 1204

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/1019 (38%), Positives = 585/1019 (57%), Gaps = 77/1019 (7%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SP FVHL++HS +S+ +G + +++ +     D+  A+A+TD +NLF  + F   A + GI
Sbjct: 3   SPRFVHLRIHSEFSITDGVVRIDDAVATAVKDEMGALALTDLSNLFGLVRFYTAARSGGI 62

Query: 68  QPIIGCQLDI-DMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQG 125
           +PI G  + + + QD            P  P  ++LLV    GY  L +L+S+  L +Q 
Sbjct: 63  KPIAGADVWVSNPQD------------PDQPHRLLLLVQNHSGYLNLCQLLSKASLDNQS 110

Query: 126 KQSVRICLSWLQEIGTE------------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
           +    + L+W  E   +            GLI L+   +G +  A   +   +A+   L 
Sbjct: 111 RGRAEVDLAWFSEPAAKAEDKAAKRTMAYGLIALSAARNGEVGAALLADQEDMAKAAALR 170

Query: 174 FKKLFGDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +KLF    Y+ +QR       +  Q+   LA   +LP+VAT+   F+   D+ AH+  +
Sbjct: 171 LEKLFPKSFYIEIQRGGHPQDEKHLQLACHLASELKLPVVATHPVQFMQRSDFIAHEARV 230

Query: 233 AVAHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
            +A   ++    R  +   + Y   + EM   F+DLP A+ N+VEIA+RC+  L +  P 
Sbjct: 231 CIAEGELLGNPRRQKKFNDEQYFLTQEEMEKRFADLPAAIANSVEIAKRCNLSLVLGQPR 290

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVI 348
           LP F       +    ++ L  ++  GLE  + +        A++   Y  RL FE+  I
Sbjct: 291 LPDFPTPPGITL----DDYLLQQSEVGLERHMEKNFPDPEERAKEMSRYHDRLVFEVKTI 346

Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
           ++M F GYFLIVADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFL
Sbjct: 347 SQMGFPGYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFL 406

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
           NP+R+SMPDFDIDFCQ  RD VI+YV++KYG + V+QI TFG++ A+AA+RDVGR L+  
Sbjct: 407 NPERVSMPDFDIDFCQHGRDRVIQYVKDKYGKDAVSQIATFGTMAARAAIRDVGRVLEQG 466

Query: 469 YSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
           Y+ VD + KL+PN P   ++++ A  ++ +  E    +  V +LL ++Q+LEG+ R+   
Sbjct: 467 YNFVDGIAKLVPNKPGQYMTIEMAKKEEKQLAEREKNEDEVRQLLSLAQQLEGMTRNVGM 526

Query: 528 HAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
           HA G++I    L+   P+Y    +D  S   ++QF+   +E  GL+KFDFLGL TLT+L 
Sbjct: 527 HAGGVLIAPGRLTDFCPLYTQESKDQDSSSVISQFDKDDVEAIGLVKFDFLGLTTLTILA 586

Query: 584 KSLDFLAQRGVKV--------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
                 A+R +K         D+  IP DD + + +L    T+ +FQLES GM+  L   
Sbjct: 587 A-----AERWIKALHADRKDWDIGEIPLDDEKAFDVLKKANTVAVFQLESRGMQGMLREA 641

Query: 636 QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
           +PD  EDIIALV+LYRPGP+D I  +  RK+G++K+    P I+P+L+ET G+++YQEQV
Sbjct: 642 KPDRFEDIIALVALYRPGPMDLIPDFIERKHGRQKVEYPDPRIEPVLRETYGIMVYQEQV 701

Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           MQ+AQ++ GYSL  AD+LRRAMGKK  EEM + ++ F  GA   GIS+  A  I++L+ +
Sbjct: 702 MQMAQMIGGYSLGGADMLRRAMGKKKPEEMAQHRKIFSDGAKAGGISEAKANEIYDLMER 761

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
           FA YGFNKSHAAAYA+++YQTAW+K +YP EF+AA+++L MD+ +K+K    D     I+
Sbjct: 762 FAGYGFNKSHAAAYALLAYQTAWLKAYYPAEFMAANLSLAMDDTDKVKILYDDCLVNQIR 821

Query: 816 IMPPSVNTPCVDF---KVGD-------NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDS 864
           +  P +NT   +F   +  D       + I Y L A++G G      I++A  AD PF  
Sbjct: 822 VFSPDINTGVYEFTPLRAPDATPDSPISHIRYGLGAVRGTGEAAIESIVKAREADGPFKD 881

Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS-----------RMQLLQSLDNIQKYAQ 913
           L DFC+RVD +++NRR +E+L+ AGA D                R  LL SL    + A+
Sbjct: 882 LFDFCARVDRRQVNRRAIEALMRAGAFDSLYRDSVPAGGNLYDIRSTLLASLARAIEAAE 941

Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
             E +         A E+     ++  E    E    R + E+  LG   +GH  D Y+
Sbjct: 942 QAEASIHQVSLFEVAGEEHRHLPELVREPIWSEKK--RLQEEKASLGLCLTGHMFDAYR 998


>gi|311069419|ref|YP_003974342.1| DNA polymerase III DnaE [Bacillus atrophaeus 1942]
 gi|310869936|gb|ADP33411.1| DNA polymerase III DnaE [Bacillus atrophaeus 1942]
          Length = 1113

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1035 (37%), Positives = 607/1035 (58%), Gaps = 55/1035 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQVHS YSLL  A ++  ++ +       ++A+TD + ++ A++F +   A GI+P
Sbjct: 2    SFVHLQVHSGYSLLNSAAAVEELVKEADTLGYTSLALTDDHVMYGAIQFYKACKARGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    +   +N              P +VLL  +  GYQ L+++ S +    Q K   
Sbjct: 62   IIGLTASVFTDEN---------EVEACP-LVLLAKSNMGYQNLLKISSVL----QSKSKE 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
             +   WL+    EG+I +T G  G I+          AE+  L  + +FG D  Y+  Q 
Sbjct: 108  GLKQKWLKSY-REGIIAITPGEKGYIETLLEAGLYDKAEQSALELQSVFGTDAFYLGYQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +G ++     +++L+    +P+ AT +  ++ +ED  A+  L A+     ++  +R   
Sbjct: 167  FKG-NQALSDHILRLSAKTGIPVAATGDVHYIRKEDKTAYRCLKAIKAGEKLADLNREE- 224

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            TPD  LK+  EM   + + PEAL  +V+IA +C   + +    LP F   +     K  +
Sbjct: 225  TPDLDLKSIEEMRMFYQEHPEALSASVQIAEQCHVDVNLGQTRLPSFPAPDG----KPAD 280

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFLIVADFIQW 366
              L     +G++ R         + + D R  +RL +EL+VI RMKFS YFLIV DF+++
Sbjct: 281  EYLAELCFSGMKER---------FKSPDERVIRRLQYELDVIKRMKFSDYFLIVWDFMKY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N I  GPGRGS AGS+ AY L IT++DP++ +LLFERFLNP+R+SMPD DIDF   R
Sbjct: 332  AHENGIVTGPGRGSAAGSLVAYVLYITNVDPIKHNLLFERFLNPERVSMPDIDIDFPDTR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+I+YV+NKYG    AQIITFG+L AKAALRDVGR   +   + D+L KLIP+ P   
Sbjct: 392  RDEMIQYVKNKYGAMHAAQIITFGTLAAKAALRDVGRVFGVNPKEADQLAKLIPSKPG-- 449

Query: 487  VSLQAIADDSRFREARLADPSV-DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+L+     S     RL + S+  ++  I++K+EGL RH STHAAG+V+ + PL+ +VP+
Sbjct: 450  VTLEDARKMSPQLNQRLNESSLLSQVFSIAKKIEGLPRHTSTHAAGVVLSEEPLTGIVPL 509

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604
             ++    + +TQ+ M  +E  GL+K DFLGL+ LTL++     +  +  +K+D S I +D
Sbjct: 510  -QEGHEGVYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESIKTMIEKEEKIKIDFSSISYD 568

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL+   T G+FQLESSGMR  L  ++P  +EDI+A+ +LYRPGP++NI ++ +R
Sbjct: 569  DEKTFSLLSKGDTTGVFQLESSGMRSVLRRLKPTGLEDIVAVNALYRPGPMENIPLFIDR 628

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+  +   H  +  +LK+T GVI+YQEQ+M IA  ++G++L EAD+LRRA+ KK K+ 
Sbjct: 629  KHGRVPVHFPHNDLKDILKDTYGVIVYQEQIMVIASKMAGFTLGEADLLRRAVSKKKKDI 688

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D+++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I  Q A++K HYP
Sbjct: 689  LDRERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHYP 748

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            + F+   +T  + N +KI ++  +A+   I+I+PPSVN     F V +  + YSL A+K 
Sbjct: 749  LYFMCGLLTSVIGNEDKIAQYLYEAKGNGIRILPPSVNKSSFPFTVENGAVRYSLRAVKN 808

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG +  + I +A  DK F+ L DFC RV SK +NR+ +E+L+ +GA+D FG +R  LL S
Sbjct: 809  VGVSAVKDIYKARKDKKFEDLFDFCFRVPSKSVNRKTIEALILSGAMDEFGQNRATLLAS 868

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-ITLEKFSVENSSVRFENEQRVLGFYF 963
            +D   ++A+    +  +    +F  E  +   K +  E+F + +  ++FE E   LG YF
Sbjct: 869  IDVAAEHAELFSAD--DDQMGLFLEESFSIKPKYVETEEFPLVD-LLQFEKE--TLGIYF 923

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRG-----NNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            S HPL  ++  L   G      +V  ++        I L A+V   +  +T+ G  + ++
Sbjct: 924  SSHPLSAHRDRLSARG------AVPILKAQQSEKKQILLGALVTKTKTIRTKTGQNMSFL 977

Query: 1019 TFSEPAKEYEANFFP 1033
            T S+   E EA  FP
Sbjct: 978  TLSDETGEIEAVVFP 992


>gi|220931162|ref|YP_002508070.1| DNA polymerase III catalytic subunit, DnaE type [Halothermothrix
            orenii H 168]
 gi|219992472|gb|ACL69075.1| DNA polymerase III catalytic subunit, DnaE type [Halothermothrix
            orenii H 168]
          Length = 1122

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/1038 (36%), Positives = 612/1038 (58%), Gaps = 38/1038 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + +FVHL VH+ YSLL+GA+ L +++ K      P +AITD   L+ A++F + A   GI
Sbjct: 2    TANFVHLHVHTEYSLLDGAIRLKDLVKKTKEYDMPGVAITDHGVLYGAIDFYKLARQYGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC++ +      K   + +        ++L+    EGY  L ++VSR +L +    
Sbjct: 62   KPIIGCEVYLTPSSFRKKDTRERY------HLLLIAQNREGYHNLTKIVSRSWL-EGFYY 114

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              R+    L +   +GLI L+    G I +    +  Q AE+ +  ++ +FG +  Y+ L
Sbjct: 115  KPRVDKDLLYQ-HRKGLICLSSCLQGEIPQLILKDRLQEAEQAIKEYEAIFGRESFYLEL 173

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H  G ++   S++++L+     PLV TN+S +L+ ED   HDVL+A+     ++ ++R
Sbjct: 174  QDHNLGDEKLVNSRLIELSNKLGTPLVVTNDSHYLNREDASLHDVLLAMQTGKTINDENR 233

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               T +  Y K+  EM S+F D+ +   NTV+IA         +   +P F + + D   
Sbjct: 234  LSFTGEEFYFKSPDEMKSLFPDIEDTYLNTVKIAEMTDIDFDFNTFYIPDFPDAKGDKTP 293

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYH-AQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E    LR+K   GL+         KG    ++ R+RL +EL +I  M +  YFLIV DF
Sbjct: 294  VEI---LRDKCQQGLK--------EKGLEDNKEARERLQYELEIIEEMGYVSYFLIVWDF 342

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +A++  I VGPGRGS AGS+ +Y L IT I+PL++ L+FERFLNP+R++MPD DIDF 
Sbjct: 343  VNFARQKGIRVGPGRGSAAGSLVSYLLGITKINPLKYGLIFERFLNPERVTMPDIDIDF- 401

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RRDE+I YV+ +YG E+VAQI TFG++ A+AA+RDVGR L +P  +VDR+ K++P   
Sbjct: 402  DERRDEIIEYVKQRYGREKVAQIGTFGTMAARAAIRDVGRVLDIPLRKVDRIAKMVP--- 458

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                  +A+  +    +    D  V RLL+ + ++EG+ RH STHAAG++IG   LS ++
Sbjct: 459  GRVTIKEALKMNDNLNKLYQQDSEVKRLLDYACRVEGMPRHISTHAAGVIIGPGDLSNII 518

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602
            P+    + +  +TQF+M+ +E+ GL+K DFLGL+ LT++ K+L+ +++R G ++D+  IP
Sbjct: 519  PL--QTQDENIITQFHMENLEELGLLKMDFLGLRNLTIINKTLNLISKRYGREIDVDNIP 576

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             +D   Y +L    T G+FQ+ES   +     ++P+   D+IAL++L RPGP+ + +V  
Sbjct: 577  LNDDRVYKMLQEGKTPGVFQMESRLFQDLNRRLKPEKFSDLIALLALGRPGPLGSNLVEQ 636

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y   ++G+ +   +HP ++P+L+ET G+I+YQEQVM+IA  L+GY++ EAD+LRR MGKK
Sbjct: 637  YIKSRHGEIEPSYLHPELEPILEETFGLILYQEQVMEIASKLAGYTMGEADLLRRGMGKK 696

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             KE + K++ERF+ GA KNGI K +A  IF+ +  FA YGFNKSH+ AYA+++YQTA++K
Sbjct: 697  KKELISKERERFVEGAVKNGIEKEVAHKIFDQMEYFAGYGFNKSHSTAYAMLAYQTAYLK 756

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSL 839
             +YP EF+AA ++  M+N++K+ ++ ++ ++  ++++PP VN    +F+   D  I + L
Sbjct: 757  ANYPSEFMAALLSTVMNNLDKVGQYIRECQEMGLRVLPPDVNRSGFEFETTPDGDISFGL 816

Query: 840  AAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIK VG      I+E  + +  + SLEDF  RVD+ ++N +V+ESL+ AG  D F   R
Sbjct: 817  KAIKNVGIKAIEAIIEERNRNGNYSSLEDFIERVDTGRVNLQVIESLIKAGVFDSFNTYR 876

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHE---NIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             Q+L   + I +      +NR        ++F+ ++  ++  I   +        R   E
Sbjct: 877  SQMLIKYEEIYEKLGSRSRNRAQGQTSFFDLFSEDEKFYNQSIEYPEIEELPLEERLNQE 936

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LG Y S HPLD +K  +    I    + +    G+ + +  +VV  ++  TR   ++
Sbjct: 937  KEYLGIYLSAHPLDPFKDKIDHF-ISTTSQDIKDYEGDKVTIGGVVVDFKEHITRTNKKM 995

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++T  +     +   FP
Sbjct: 996  AFLTLEDWLGNIKVVVFP 1013


>gi|229118095|ref|ZP_04247454.1| DNA polymerase III subunit alpha [Bacillus cereus Rock1-3]
 gi|228665318|gb|EEL20801.1| DNA polymerase III subunit alpha [Bacillus cereus Rock1-3]
          Length = 1108

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/1033 (36%), Positives = 607/1033 (58%), Gaps = 61/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEEKSYP----LVLLAEDEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+   T++ +F D  Y+ LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKEDQAEEVACTYQNMF-DNFYMCLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISKVNVPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +YLK+  EM ++FS   EA+ NTV+IA RC   +  H   LP+F       +   E 
Sbjct: 226  TDQYYLKSSDEMEALFSHTEEAIYNTVKIAERCKVEIPFHVNQLPKF------PVPSNET 279

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            N+  LR     GL  R        G   + + +RL+ ELNVI+ M FS YFLIV DF+++
Sbjct: 280  NDTYLRRACEEGLHKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ ++ G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKEIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERQHFVQGCLRNGYDETSADKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E    K F+ L +FC R+ +K +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEERESKMFEDLFEFCLRMPAKFVTERNLEAFVWSGCFDDFGISRTNLWKS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            L    +YA               A + G   D +   K+ V+   + F      E+  LG
Sbjct: 870  LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 913  FYLSSYPTAQYVKLAKELEIPSLAQAMRNKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 972  CDQNDEMEAVVFP 984


>gi|255994597|ref|ZP_05427732.1| DNA polymerase III, subunit alpha [Eubacterium saphenum ATCC 49989]
 gi|255993310|gb|EEU03399.1| DNA polymerase III, subunit alpha [Eubacterium saphenum ATCC 49989]
          Length = 1182

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/1081 (37%), Positives = 608/1081 (56%), Gaps = 85/1081 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VHS YSLL+GA  + +++ + A     ++A+TD   +F  +EF ++    GI+P
Sbjct: 2    SFTHLHVHSEYSLLDGAARIRDLVAEAARFGMKSLALTDHGTMFGVVEFYKECKKQGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  + ++++  Q K+P      ++LLV   EGY+ LI+LVS      +G    
Sbjct: 62   IIGCEVYV-ARGSIEV--QEKSP----NHLILLVKNEEGYKNLIKLVS--IANKEGFYYK 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
                  L E  ++GLI L+   +G I       + + A+K  + ++ ++G+   Y+ +Q 
Sbjct: 113  PRIDENLMERFSKGLIALSACPAGRIPELILEGNYEEAKKTAIKYRDIYGEGNFYLEIQN 172

Query: 189  HRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H G D+ +    ++ +++    + LVATN+S ++ +ED + HDVL+ +     +S + R 
Sbjct: 173  H-GLDKEQIINRELTKMSEETGIKLVATNDSHYVKKEDAKMHDVLLCIKTGARLSDEVRM 231

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  + D YLK+  EM  +F    +A+ENT+E+A +C+F    ++  LP F   E +    
Sbjct: 232  KFPSDDFYLKSEDEMRMLFPGQTKAIENTLEVAEKCNFDFDFNSQHLPDFEVPEGET--- 288

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             +E  LR     GLE R             + R+RL+FEL+ I  M +  YFLIV DFI 
Sbjct: 289  -KEGYLRKLCCEGLEKRHKN-------VTNELRERLEFELDTIHNMGYDEYFLIVHDFIH 340

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK   IPVGPGRGS AGS+ +Y L IT +DP++++LLFERFLNP+R+SMPD DIDFC+D
Sbjct: 341  YAKTRGIPVGPGRGSAAGSLVSYCLDITCVDPIKYNLLFERFLNPERVSMPDIDIDFCKD 400

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV +KYG +RVAQI+TFG+L+AKAA+RDVGR +   Y +VDRL K +P  P  
Sbjct: 401  RRQEVIDYVIDKYGDDRVAQIVTFGTLKAKAAIRDVGRIMNAGYGEVDRLAKAVP--PGL 458

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             V+L     DS F+E          +++++ +LEG+ R+A THAAG+VI    +   VP+
Sbjct: 459  GVTLSDALKDSNFKELYEEGEDSKEVVDMALQLEGMVRNAGTHAAGVVISKESIDSYVPI 518

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
            Y+  +     TQ  M  IE+ GL+K DFLGLK LT+++   + + +  G+K++     +D
Sbjct: 519  YKSDKG--FCTQMTMTTIEELGLLKMDFLGLKNLTVIENCKNMVYRNHGIKINFDDSNYD 576

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D + Y L+++  T GIFQLES GM + ++ ++PD IEDIIA +SLYRPGP+D+   Y   
Sbjct: 577  DSKVYELISSGNTEGIFQLESEGMTEFMKDLKPDSIEDIIAGISLYRPGPMDSKDNYIFN 636

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K   ++I   HP + P+L  T G ++YQEQVMQI + L+GYS   AD++RRAM KK  +E
Sbjct: 637  KRHPDRIKYKHPALKPILSLTYGCLVYQEQVMQIVRELAGYSYGRADLVRRAMSKKKADE 696

Query: 725  MDKQKERF------------------------------ISGASKNGISKTIAVNIFELLA 754
            M K++E F                              + G  K GI K +   IF+ + 
Sbjct: 697  MAKEREIFLFGTENEYWAEENEKSCKISDAPVTDDEEVVEGCVKRGIPKEVGNEIFDEME 756

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNKSHAAAYAVISYQTA++K HYPVEF+A+ +     N  K+ ++ ++AR  NI
Sbjct: 757  SFASYAFNKSHAAAYAVISYQTAYLKAHYPVEFMASLLASASGNDGKMARYIKNARDMNI 816

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA--SADKPFDSLEDFCSRV 872
            +I+PP VN   V F+   N I + LA +K VG   A HI++   S  K +D++  F   +
Sbjct: 817  EILPPDVNKSGVTFEARGNEILFGLADVKNVGDNAADHIVKVRESKGKAYDNMYTFVQDM 876

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929
            D  K+N+ VLE+L+ AGA   F  +    L   ++  +  +   K  T    ++F     
Sbjct: 877  DISKVNKSVLENLIRAGAFRDFEGTMAANLSIYNDALEQKKKSNKGITADQMSLFEEGEI 936

Query: 930  EKGTFSDKI-TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL--RKMGIKGY--- 983
            E   FS KI  + +F  +   ++FE E   LG Y + HP+  Y+  L  R   + G    
Sbjct: 937  EGEQFSQKIPNIPEFK-DAQKMKFEKE--ALGMYLTTHPMKEYEQYLEGRITDVLGNINP 993

Query: 984  ------EESVATI-----RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                  EE VA+       G  ++LA ++ + +   T+KG  + +    +     E   F
Sbjct: 994  EADSDDEEDVASKSSAYREGQRVKLAGLITTVKTIVTKKGEMMAFANLEDMTGRMEMVIF 1053

Query: 1033 P 1033
            P
Sbjct: 1054 P 1054


>gi|153815935|ref|ZP_01968603.1| hypothetical protein RUMTOR_02180 [Ruminococcus torques ATCC 27756]
 gi|317500700|ref|ZP_07958918.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|145846754|gb|EDK23672.1| hypothetical protein RUMTOR_02180 [Ruminococcus torques ATCC 27756]
 gi|316897894|gb|EFV19947.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 1157

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/1051 (37%), Positives = 614/1051 (58%), Gaps = 48/1051 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F ++A + GI P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMYGVIDFYREAKSQGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +    N +   +          +VLL    EGY  L+++VS+ ++ +      
Sbjct: 62   ILGCEVYV--APNSRFDREVTGGEDRYYHLVLLAENNEGYANLMKIVSKGFV-EGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L++  + G+I L+   +G + R         A+K  L ++ +FG D  Y+ LQ 
Sbjct: 119  RVDKELLRKYHS-GIIALSACLAGEVSRYLMKGLYDEAKKAALEYRDIFGKDHFYLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+     Q+++++    + LVATN+  +   +D +AHD+L+ +     ++ ++R R
Sbjct: 178  HGLPDQGLVNQQLLKMSRETGIELVATNDVHYTYAKDEKAHDILLCIQTGKRLADENRMR 237

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM S+F    +ALENT +IA RC   ++     LP++   +  D    
Sbjct: 238  YEGGQYYIKSEEEMKSLFPYALQALENTQKIADRCLVEIEFGVTKLPKY---DVPDGYTS 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E  LR     GLE R A+        A + R+RLD+EL  I  M +  YFLIV DFI++
Sbjct: 295  WEY-LRKLCYEGLEKRYAE-------RADELRERLDYELGTIKNMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + I VGPGRGS AGS+ +Y L IT IDP+R+ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  AKDHGIAVGPGRGSAAGSIVSYCLGITTIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG+L A+  +RDVGR + MPY+ VD + K+IP +P   
Sbjct: 407  RQEVIDYVVGKYGKDRVVQIVTFGTLAARGVIRDVGRVMDMPYAFVDSIAKMIPQEPKMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   R+    D  V  L+E++++LEGL RH+S HAAG+VI  + + + VP+ 
Sbjct: 467  IE-KALKVNPELRKMCEDDEEVKYLIEMAKRLEGLPRHSSMHAAGVVISQKSVDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            R     +  TQF M  +E+ GL+K DFLGL+TLT++Q ++    ++   V++  + +DD 
Sbjct: 526  RAADGSV-TTQFTMTTLEQLGLLKMDFLGLRTLTVIQNAVLMARKKDPSVNMDTLDYDDK 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +    + T  T GIFQLES+GM+  ++ ++P+ +ED+IA +SLYRPGP+D I  Y   KN
Sbjct: 585  KVLEYIGTGKTDGIFQLESAGMKSFMKELKPNSLEDMIAGISLYRPGPMDFIPQYIKGKN 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                I    P ++P+L  T G I+YQEQVMQI + L+GYSL  +D+LRRAM KK  EEM 
Sbjct: 645  DASSISYDCPQLEPILNSTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMSKKKGEEMK 704

Query: 727  KQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            ++++ F        I G  KNGI + +A  I++ +  FA+Y FNKSHAAAYAV++YQTAW
Sbjct: 705  RERQIFLYGDEASGIPGCVKNGIDEQVANKIYDEMLDFANYAFNKSHAAAYAVVAYQTAW 764

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPVE++AA MT  +DN  K+ ++   +RQ  IQI+PP +N    DF V +  I Y 
Sbjct: 765  LKYYYPVEYMAALMTSVIDNPSKVAEYIYASRQMGIQILPPDINNGEADFSVDEGNIRYG 824

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK-LNRRVLESLVFAGALDCFGY 896
            L+AIK VG    R ++E      P+ +LEDF +RV SK+ LN+R +E+L+ AGALD  G 
Sbjct: 825  LSAIKSVGRPVVRAMLEERRTFGPYKNLEDFITRVSSKEGLNKRTIENLIKAGALDTLGG 884

Query: 897  SRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVR 951
            +R Q +    Q +D++ +  ++    + +  + +   EK  F  ++  + ++S EN  + 
Sbjct: 885  TRKQFMSIYIQIMDHVNQEKKYSMSGQMSLFDLVGEEEKADFQIRMPDVGEYSKEN-KLA 943

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKG------YEESVATIR---GNNIRLAAMVV 1002
            FE E  VLG Y SGHPL+ ++   R+M I        ++E +   +   G    +  M+V
Sbjct: 944  FEKE--VLGVYISGHPLEEHEERWRRM-ISATTADFQFDEELNRTKVHDGEKSVVGGMIV 1000

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K  K T+    + ++T  +     E   FP
Sbjct: 1001 DKTVKYTKTNQVMAFLTLEDLLGTVEVVIFP 1031


>gi|330001663|ref|ZP_08304089.1| putative DNA polymerase III subunit alpha [Klebsiella sp. MS 92-3]
 gi|328537605|gb|EGF63825.1| putative DNA polymerase III subunit alpha [Klebsiella sp. MS 92-3]
          Length = 788

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/800 (44%), Positives = 504/800 (63%), Gaps = 34/800 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4   PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHGAGIK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PI+G   D  +Q +L               + +L +   GYQ L  L+SR Y    G   
Sbjct: 64  PIVGA--DFHVQCDLLGDE--------FTELTVLAANNTGYQNLTLLISRAYQRGYGALG 113

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I   WL E   EGLI+L+GG  G +  +    +  + E+ +  +++ F DR ++ L R
Sbjct: 114 PWIDRDWLVE-HQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFLELIR 172

Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  +       V LA    LP+VATN+  FL   D++AH++ +A+     +    RPR
Sbjct: 173 TGRQDEEAYLHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E+ L  K+  GLE RL         +     +Y QRLD EL VI +M F GYFLIV +F
Sbjct: 288 TEDFLVMKSKEGLEERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLIVMEF 347

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
           P+Y D +   PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D+
Sbjct: 527 PLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEGPLDI 586

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
           + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707 MLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772 ISYQTAWMKTHYPVEFLAAS 791
           +SYQT W+K HYP EF+AA 
Sbjct: 767 VSYQTLWLKAHYPAEFMAAG 786


>gi|331089825|ref|ZP_08338718.1| hypothetical protein HMPREF1025_02301 [Lachnospiraceae bacterium
            3_1_46FAA]
 gi|330403522|gb|EGG83080.1| hypothetical protein HMPREF1025_02301 [Lachnospiraceae bacterium
            3_1_46FAA]
          Length = 1157

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/1051 (37%), Positives = 614/1051 (58%), Gaps = 48/1051 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F ++A + GI P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMYGVIDFYREAKSQGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +    N +   +          +VLL    EGY  L+++VS+ ++ +      
Sbjct: 62   ILGCEVYV--APNSRFDREVTGGEDRYYHLVLLAENNEGYANLMKIVSKGFV-EGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L++  + G+I L+   +G + R         A+K  L ++ +FG D  Y+ LQ 
Sbjct: 119  RVDKELLRKYHS-GIIALSACLAGEVSRYLMKGLYDEAKKAALEYRDIFGKDHFYLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+     Q+++++    + LVATN+  +   +D +AHD+L+ +     ++ ++R R
Sbjct: 178  HGLPDQGLVNQQLLKMSRETGIELVATNDVHYTYAKDEKAHDILLCIQTGKRLADENRMR 237

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM S+F    +ALENT +IA RC   ++     LP++   +  D    
Sbjct: 238  YEGGQYYIKSEEEMKSLFPYALQALENTQKIADRCLVEIEFGVTKLPKY---DVPDGYTS 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E  LR     GLE R A+        A + R+RLD+EL  I  M +  YFLIV DFI++
Sbjct: 295  WEY-LRKLCYEGLEKRYAE-------RADELRERLDYELGTIKNMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + I VGPGRGS AGS+ +Y L IT IDP+R+ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  AKDHGIAVGPGRGSAAGSIVSYCLGITTIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG+L A+  +RDVGR + MPY+ VD + K+IP +P   
Sbjct: 407  RQEVIDYVVRKYGKDRVVQIVTFGTLAARGVIRDVGRVMDMPYAFVDSIAKMIPQEPKMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   R+    D  V  L+E++++LEGL RH+S HAAG+VI  + + + VP+ 
Sbjct: 467  IE-KALKVNPELRKMCEDDEEVKYLIEMAKRLEGLPRHSSMHAAGVVISQKSVDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            R     +  TQF M  +E+ GL+K DFLGL+TLT++Q ++    ++   V++  + +DD 
Sbjct: 526  RAADGSV-TTQFTMTTLEQLGLLKMDFLGLRTLTVIQNAVLMARKKDPSVNMDTLDYDDK 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +    + T  T GIFQLES+GM+  ++ ++P+ +ED+IA +SLYRPGP+D I  Y   KN
Sbjct: 585  KVLEYIGTGKTDGIFQLESAGMKSFMKELKPNSLEDMIAGISLYRPGPMDFIPQYIKGKN 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                I    P ++P+L  T G I+YQEQVMQI + L+GYSL  +D+LRRAM KK  EEM 
Sbjct: 645  DASSISYDCPQLEPILNSTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMSKKKGEEMK 704

Query: 727  KQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            ++++ F        I G  KNGI + +A  I++ +  FA+Y FNKSHAAAYAV++YQTAW
Sbjct: 705  RERQIFLYGDEASGIPGCVKNGIDEQVANKIYDEMLDFANYAFNKSHAAAYAVVAYQTAW 764

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPVE++AA MT  +DN  K+ ++   +RQ  IQI+PP +N    DF V +  I Y 
Sbjct: 765  LKYYYPVEYMAALMTSVIDNPSKVAEYIYASRQMGIQILPPDINNGEADFSVDEGNIRYG 824

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK-LNRRVLESLVFAGALDCFGY 896
            L+AIK VG    R ++E      P+ +LEDF +RV SK+ LN+R +E+L+ AGALD  G 
Sbjct: 825  LSAIKSVGRPVVRAMLEERRTFGPYKNLEDFITRVSSKEGLNKRTIENLIKAGALDTLGG 884

Query: 897  SRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVR 951
            +R Q +    Q +D++ +  ++    + +  + +   EK  F  ++  + ++S EN  + 
Sbjct: 885  TRKQFMSIYIQIMDHVNQEKKYSMSGQMSLFDLVGEEEKADFQIRMPDVGEYSKEN-KLA 943

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKG------YEESVATIR---GNNIRLAAMVV 1002
            FE E  VLG Y SGHPL+ ++   R+M I        ++E +   +   G    +  M+V
Sbjct: 944  FEKE--VLGVYISGHPLEEHEERWRRM-ISATTADFQFDEELNRTKVHDGEKSVVGGMIV 1000

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K  K T+    + ++T  +     E   FP
Sbjct: 1001 DKTVKYTKTNQVMAFLTLEDLLGTVEVVIFP 1031


>gi|325289860|ref|YP_004266041.1| DNA polymerase III catalytic subunit, DnaE type [Syntrophobotulus
            glycolicus DSM 8271]
 gi|324965261|gb|ADY56040.1| DNA polymerase III catalytic subunit, DnaE type [Syntrophobotulus
            glycolicus DSM 8271]
          Length = 1157

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/1040 (37%), Positives = 596/1040 (57%), Gaps = 39/1040 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+GA  +N ++ K      PA+AITD   ++  ++F +     GI+PI
Sbjct: 2    FTHLHVHTEYSLLDGAARINKLVKKAGELGMPALAITDHGVMYGVIDFYKACKKQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +     L   N G+        +VLL    EGY+ L+++VS  ++ +      R
Sbjct: 62   IGCEVYV-APGKLTEKNAGRDD--KNYHLVLLAENMEGYRNLVKIVSNAHI-EGFYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
                +L+E  ++GLI L+   +G I      ++ + A +  L +  +FG    ++ +Q H
Sbjct: 118  TDKKFLRE-NSKGLIALSACLAGEISELILEDNLEKARETALEYLDIFGKGNFFLEIQDH 176

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D+ +  +++++++    +P+VATN+  ++ + D    DVL+ +     ++ + R   
Sbjct: 177  GLRDQQKVNTEMLKISRMTGIPIVATNDVHYVEKADSFLQDVLLCIQTGKTLNDQTRMSF 236

Query: 249  T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YLK  SEM  +F + PE LE T EIA RC+         LP +   E   +    
Sbjct: 237  EGQEFYLKAHSEMNLLFGEHPEVLEITEEIAARCNVDFAFGTNFLPDYQVPEGFTL---- 292

Query: 308  ENELRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +  LR +       R  Q G   KG        RL++ELNVI +  +SGYFLIVADF ++
Sbjct: 293  DQYLREQCAQIFPQRYPQAGEREKG--------RLEYELNVITKTGYSGYFLIVADFCRY 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++N + VGPGRGS A S+ AY L ITDI+PLR  LLFERFLNP+R++MPD DIDF  + 
Sbjct: 345  ARENGVTVGPGRGSAAASMVAYLLGITDIEPLRHDLLFERFLNPERITMPDIDIDFDPEG 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD+VI+YV  KYG ++V QIITFG++ AK A+RDVGR L +P S+VD++ K +PN+    
Sbjct: 405  RDKVIKYVTQKYGADKVCQIITFGTMGAKGAIRDVGRVLNIPLSKVDKVAKAVPNELGMT 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +           R     +  + RLLEISQ LEG+ RHASTHAAG+VI   PL+  +P+ 
Sbjct: 465  LERALTVSPDLIRMVS-EEEEIKRLLEISQGLEGMPRHASTHAAGVVIAREPLTNYLPLQ 523

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            R      P+TQF MK +E  GL+K DFLGL+ LT++ ++L  + + +G  +DL+ +P DD
Sbjct: 524  RTAEG-FPMTQFPMKTVEDIGLLKMDFLGLRNLTIISQTLTRIQETQGKTIDLNKLPLDD 582

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +TY +L+   + G+FQLES GM+  L+ ++P C EDIIA+++LYRPGP++ I  +  RK
Sbjct: 583  LKTYQMLSEGKSSGVFQLESGGMKAILKELKPSCFEDIIAVLALYRPGPMEQIPEFIKRK 642

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
                K+  +HP ++ +L+ T G+I+YQEQVMQIA+ L GYSL  AD+LRRAMGKK ++ M
Sbjct: 643  QSG-KLSYLHPKLEKILQATYGIIVYQEQVMQIARDLGGYSLGRADLLRRAMGKKNRDIM 701

Query: 726  DKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            D++++ F+             GA + G+ K  A  IF+L+AKFA+YGFNK HA AYA+IS
Sbjct: 702  DEERQNFVHGLQDDHGEVIVPGAIRLGLKKNEAEEIFDLMAKFAEYGFNKGHATAYALIS 761

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K ++P+EF A+ ++  +   +K+  +  +A+   I I+PP V     DF +   
Sbjct: 762  YQTAYLKANFPLEFAASLLSSVIGVSDKVSFYIHEAQNNGITILPPDVQFSYNDFAIEGR 821

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I + L A++ VG      I+E   + PF SL DF SR+DS+ +N+RV+ESL+ AGA   
Sbjct: 822  AIRFGLGAVRNVGAQVVEKIIEERKNGPFRSLYDFISRMDSRMVNKRVMESLIKAGAFQS 881

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               SR Q L  L+ +   AQ  +++R +   ++F  ++    D    +   V    +  +
Sbjct: 882  L-CSRAQALTVLERMLDLAQNRQRDRESGQMSLFDLDEKLEEDFAMPQLDEVSQGDIS-K 939

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  LG Y + HPL   +   + +        +  +    + L  ++ S +Q  T++G 
Sbjct: 940  LEKEYLGLYLTNHPLSSIETQYKDLISSDIATCLEGLEEKKVILCGIITSYRQTITKRGE 999

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             +      + +   E   FP
Sbjct: 1000 MMATFLLEDLSGTIEVLVFP 1019


>gi|224418173|ref|ZP_03656179.1| DNA polymerase III subunit alpha [Helicobacter canadensis MIT
            98-5491]
 gi|253827500|ref|ZP_04870385.1| DNA polymerase III, alpha subunit [Helicobacter canadensis MIT
            98-5491]
 gi|313141708|ref|ZP_07803901.1| DNA polymerase III subunit alpha [Helicobacter canadensis MIT
            98-5491]
 gi|253510906|gb|EES89565.1| DNA polymerase III, alpha subunit [Helicobacter canadensis MIT
            98-5491]
 gi|313130739|gb|EFR48356.1| DNA polymerase III subunit alpha [Helicobacter canadensis MIT
            98-5491]
          Length = 1171

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/1039 (37%), Positives = 605/1039 (58%), Gaps = 52/1039 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL +H+ YSLL+G   +  +  +I      ++AITD  N+F A+EF +     GI+P
Sbjct: 14   SFTHLHLHTEYSLLDGLNKIKVLAKRIKELGMDSVAITDHGNMFGAIEFYKAMKEQGIKP 73

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G  ++  + +  +++++    F     + L     EGY+ L+ L S+  L     +  
Sbjct: 74   ILG--MEAYLHNAEEISDKSNQRF----HLCLYAKNLEGYKNLMYLSSQACLYGYYMKP- 126

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPID------------RAFFFNSSQVAEKRLLTFKKL 177
            RI    L+E  + GLI  +   +G +             R  +  + +VA    L ++ +
Sbjct: 127  RISKKMLRE-HSAGLICSSACLNGEVQWHLNVKKDDNKGRKGYERAKEVA----LEYQDI 181

Query: 178  FGDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG+  Y+ L RH G +  +  ++Q++Q++    + ++ATN++ +  + D  A +V   + 
Sbjct: 182  FGEDFYLELMRH-GIEEQQLIDNQILQISLETGIKIIATNDTHYTKQSDSTAQEVAFCIG 240

Query: 236  HSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                 +  +R R T  + Y+K+  EM  +++D PEAL NT EIA +C+  L +  P  P 
Sbjct: 241  FGKDFNDPNRMRHTVQEFYIKSPEEMAQLYADFPEALANTQEIANKCNLELHLGDPTPPS 300

Query: 295  F------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
            F       + E  D  ++ E     K   GL+ RL    I +  H Q+Y +RL+ E+ +I
Sbjct: 301  FKFTAEYAKAENLDFTQDSEY-FAYKCREGLKKRLLN--IPQEKH-QEYTERLEREIEII 356

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +MKF GY LIV DF++ AK+  IPVGPGRGS AGS+ A+ L IT+IDP+++ LLFERFL
Sbjct: 357  NKMKFPGYMLIVWDFVRAAKERGIPVGPGRGSAAGSLVAFCLEITNIDPMKYDLLFERFL 416

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DFCQ RR+E++ YV  KYG   VAQ+ITFG ++AKA +RDV R + MP
Sbjct: 417  NPERVSMPDIDMDFCQSRREEILEYVTEKYGRHNVAQVITFGMMKAKAVIRDVARVMGMP 476

Query: 469  YSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
            Y + D   KLIP D    ++L+ A   + + +E    +P   ++ + +  LE   R+  T
Sbjct: 477  YGEADSFAKLIPKDL--DITLEKAYEKEPKIKELIEKNPLAKKIWDFAVILENTKRNPGT 534

Query: 528  HAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            HAA +VI  +  L    P+YR  R  +  TQ++MK++E   LIKFDFLGLKTLTL+  +L
Sbjct: 535  HAAAVVIDSENELWHKAPLYRSSRDGIIATQYSMKYLEDVDLIKFDFLGLKTLTLIDDAL 594

Query: 587  DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
              +  R  +++D   +  DD + Y  L +  TLGIFQ+ESS  +   + ++P   EDIIA
Sbjct: 595  KLIKNRHHLEIDFLKLDVDDKKVYETLQSGNTLGIFQIESSMFQGINKRLKPSTFEDIIA 654

Query: 646  LVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            +++L RPGP+++ +V  + +RK+GK  IV + P ++P+LK T G I+YQEQVMQI Q + 
Sbjct: 655  IIALGRPGPMESGMVSDFIDRKHGKAPIVYMFPELEPILKPTYGTIVYQEQVMQIVQRIG 714

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G+SL EAD++RRAMGKK  + M   K +F  GA   G  K  A  ++EL+ KFA YGFNK
Sbjct: 715  GFSLGEADLIRRAMGKKDAQIMADNKNKFAQGAQSQGFDKAKAEELWELIVKFAGYGFNK 774

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA+++++TA++KT+YP EF+AA +T E +  EKI ++ ++A + +I+++PP++  
Sbjct: 775  SHSAAYAMLTFETAYLKTYYPKEFMAALLTSEKNATEKIVEYIEEANKMDIKVLPPNLQK 834

Query: 824  PCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878
              ++F V    G++ I + L AIKG G      I+E   +   F  LEDF +R+D +K+N
Sbjct: 835  SELEFSVAKIEGEDCILFGLGAIKGAGEVAINVILEERKNNGEFKDLEDFLARIDPQKVN 894

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            ++ LES + +GA+DCF Y+R  LL+ ++ + + A+  +  R     ++F   +   S  +
Sbjct: 895  KKSLESFIKSGAMDCFNYTRKTLLEQVEILTESARVAQTARKEAENSLFGDSEEFTSVAL 954

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRL 997
             LE     +     E E+  LGFY SGHPL+ YK I++ +    Y   +  I  N +I L
Sbjct: 955  ELENKGEFDKKQILEFEKESLGFYASGHPLENYKEIIKSIDCV-YTNQIQDIAENSHILL 1013

Query: 998  AAMVVSKQQKKTRKGSRIG 1016
               +     K ++ G R G
Sbjct: 1014 IGSIEDVITKFSKTGKRYG 1032


>gi|229032249|ref|ZP_04188222.1| DNA polymerase III subunit alpha [Bacillus cereus AH1271]
 gi|228729029|gb|EEL80032.1| DNA polymerase III subunit alpha [Bacillus cereus AH1271]
          Length = 1105

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/1032 (36%), Positives = 608/1032 (58%), Gaps = 61/1032 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPII
Sbjct: 1    MHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPII 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   I
Sbjct: 61   GLTASI-------FSEEDEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               WL     +GLI ++ G  G I++    +    AE+    ++ +FG+  Y++LQ H  
Sbjct: 106  PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESEAEELARMYQSMFGN-FYMSLQHHAI 163

Query: 192  YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             D    + ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  
Sbjct: 164  QDELLLQEKLPAFMSRINVPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223

Query: 251  D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F       +   E N
Sbjct: 224  DQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHINQLPKF------PVPANETN 277

Query: 310  E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR     GL+ R        G   + + +RL+ ELNVI+ M FS YFLIV DF+++A
Sbjct: 278  DMYLRRVCEEGLQKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RR
Sbjct: 331  HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRR 390

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +
Sbjct: 391  DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448

Query: 488  SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V + 
Sbjct: 449  TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ ++ G ++D+  +P  D
Sbjct: 508  QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVEKTGTQIDIRNLPLQD 567

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K
Sbjct: 568  EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +
Sbjct: 628  HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +
Sbjct: 688  DQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +
Sbjct: 748  EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL
Sbjct: 808  GMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGISRTNLWKSL 867

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961
                +YA               A + G   D +   K+ V+   + F      E+  LGF
Sbjct: 868  KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALGF 910

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF 
Sbjct: 911  YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITFC 969

Query: 1022 EPAKEYEANFFP 1033
            +   E EA  FP
Sbjct: 970  DQNDEMEAVLFP 981


>gi|329120922|ref|ZP_08249554.1| DNA-directed DNA polymerase III alpha subunit [Dialister
            micraerophilus DSM 19965]
 gi|327471381|gb|EGF16832.1| DNA-directed DNA polymerase III alpha subunit [Dialister
            micraerophilus DSM 19965]
          Length = 1138

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/1038 (37%), Positives = 591/1038 (56%), Gaps = 40/1038 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YSL +G   +  ++  +    Q AIAITD   ++ A+   ++    GI+P
Sbjct: 3    SFVHLHSHTEYSLFDGISRIKELVSYVKELGQQAIAITDHGAMYGAVYLYKECMKQGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +      K  N  K     +  ++LL    EGYQ LI++ S+ ++ +      
Sbjct: 63   IIGCELYVTADSRFKKGNAFK---EKLGHLILLAENNEGYQNLIKICSKAWV-EGYYVKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L++  ++G+I LT    G I +A      + A K    +   FG +  ++ LQ 
Sbjct: 119  RVDHDLLRKY-SKGIIALTSCIGGEIPQAILNGDKEKARKLTEFYIDTFGRNNFFLELQN 177

Query: 189  HRGYDRYRESQVVQL-AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +     Q + L A  + L LVATN+  ++ +ED ++H++ + ++    +   D P 
Sbjct: 178  HGMPEEAIVRQELSLIAKEYNLGLVATNDFHYVRKEDAKSHEIKLCISTGNTL---DNPN 234

Query: 248  ----VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                   + Y K+  EM S+  + P A+ENT  IA RC+  L      LP + +  C   
Sbjct: 235  HFAFANNEFYCKSGEEMKSLLGEFPGAIENTKIIAERCNVKLTFGKHKLPSY-DVPC--- 290

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQ-RLDFELNVIARMKFSGYFLIVA 361
                      +  A    +L   A+ K Y H  D  + RL++ELN+I +M FS YFLIV 
Sbjct: 291  ---------GETAATYLRKLCFDALPKRYPHFNDKEESRLNYELNIINQMGFSDYFLIVM 341

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++AK   IP+GPGRGS AGS+ AY L IT+IDPLRF LLFERFLNP+R+SMPD D D
Sbjct: 342  DFIRYAKNKGIPIGPGRGSAAGSIVAYLLDITEIDPLRFDLLFERFLNPERVSMPDIDTD 401

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
             C  RR E+I Y+++KYG E+VAQIITFG+L A+A +RDVGR + +P  +VDR+ K+IP 
Sbjct: 402  LCYRRRGEIIEYLKSKYGEEQVAQIITFGTLAARAVIRDVGRVMSIPLKEVDRIAKMIPG 461

Query: 482  DPAHPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V+L++  + SR F      + +V  L++   KLEGL R + THAAG+VI  +P+ 
Sbjct: 462  GPG--VTLKSTLESSRDFLNEYENNNTVRTLVDHCIKLEGLSRQSGTHAAGVVICSKPVY 519

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
            + VP+ +  + D   TQ+     E+ GL+K D LGL+ LT++  +L  + + RG+ V +S
Sbjct: 520  EYVPI-QLTQDDFIQTQYEKDLDEELGLLKMDLLGLRNLTVIHDTLQMIKENRGITVKMS 578

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I   D +T ++L    T+G+FQ ES G    L  + P+  ED+I +V+LYRPGP+ + +
Sbjct: 579  EIDDSDAKTCNMLCMGDTVGVFQSESDGFTNLLMQLHPERFEDLIPMVALYRPGPLGSGM 638

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
               + NRK+GK K+   HP ++ +LKET GVI+YQEQVMQIA  + G++L ++D+LRRAM
Sbjct: 639  AEDFINRKHGKTKVDYPHPSLEKILKETYGVILYQEQVMQIASEMGGFTLGQSDLLRRAM 698

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            G K  E +  Q+E F+ GA   GI K+I+ ++F+L+  FA YGFNKSH+  Y  I+++TA
Sbjct: 699  GHKEPEILQAQRELFVKGAEGKGIDKSISNHVFDLMVHFAGYGFNKSHSVCYGRIAWETA 758

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K ++  EF+A+ MT  + ++ K+ ++ ++ R+  I+++ P +N     F V    I +
Sbjct: 759  YLKANFRPEFMASMMTCYIGDINKVNRYIENTRKAGIKVLAPDINKSQAYFSVKGENIIF 818

Query: 838  SLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+ I+ VG     HI+E+   K  F  L D   R+DSK LN R  ESL+  GALDCFGY
Sbjct: 819  GLSGIQNVGENAVNHIIESRNKKGDFKDLIDLLERIDSKILNSRACESLIKCGALDCFGY 878

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R QLL  LD+    A     +R    +N+FA  +     +I        +   +   E+
Sbjct: 879  DRSQLLAVLDDAINIAASGRFDRDAGQQNLFAESE--IIREIDYPDIEPMSKKEKLHWEK 936

Query: 957  RVLGFYFSGHPLDVYKPILRK-MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            ++LGFY SGHPLD Y  ++   +  K ++ +     G  + +  +V   ++  T+KG  +
Sbjct: 937  KLLGFYVSGHPLDEYSDMIESFVKSKVFDNNDIDYDGRIVTMCGIVTRVKKTITKKGLSM 996

Query: 1016 GWVTFSEPAKEYEANFFP 1033
            G+ T  +   E+E   FP
Sbjct: 997  GYATLEDYDGEFECVIFP 1014


>gi|306821145|ref|ZP_07454761.1| DNA-directed DNA polymerase III alpha subunit [Eubacterium yurii
            subsp. margaretiae ATCC 43715]
 gi|304550838|gb|EFM38813.1| DNA-directed DNA polymerase III alpha subunit [Eubacterium yurii
            subsp. margaretiae ATCC 43715]
          Length = 1147

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/1062 (35%), Positives = 614/1062 (57%), Gaps = 57/1062 (5%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            + + +     F HL +H+ YSLL+G   ++ ++ K +     +IAITD   +F  ++F +
Sbjct: 1    MVESITSEKKFTHLHLHTQYSLLDGFTVIDKVMKKASDLGMDSIAITDHGVMFGVVDFYK 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A    I+PIIGC+L    + +    N  K        I+LL    EGY+ LI+LVS + 
Sbjct: 61   AAKKYNIKPIIGCELYTAARTHKDKENIDKKS----GHIILLAKDDEGYRNLIKLVS-IG 115

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
             +D      R+    L++  ++GL+ L+   +G + +       + A K  L+ ++++G 
Sbjct: 116  FVDGFYYKPRVDYELLKKY-SKGLVCLSACLAGDVQQQILAGDYEKACKTALSLEEIYGK 174

Query: 181  -RLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHS 237
               Y+ +Q H   ++ + +  + +++    +PLV TN+  ++ ++D ++H+VL+ +    
Sbjct: 175  GNFYLEMQNHNIPEQKKVNIYLRKMSKDTGIPLVVTNDVHYVDKQDNKSHEVLLCIQTGK 234

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            T+  ++    +T + Y K++ EM  +F    EAL NT +IA  C+      +  LP +  
Sbjct: 235  TLADEQKMEFLTNEFYFKSQDEMYELFEGDEEALYNTQKIAEMCNLEFDFDSYHLPNYEV 294

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGY 356
             E             N        +L    + K     D  RQRLDFEL VI +M +  Y
Sbjct: 295  PE-------------NYTAYEYLKKLCNDGLKKYDKVTDEIRQRLDFELEVINQMGYVAY 341

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV DFI +AKKNNI VGPGRGS AGS+ +Y L ITDIDPL+F+LLFERFLNP R+SMP
Sbjct: 342  FLIVHDFIDFAKKNNIAVGPGRGSAAGSIVSYLLNITDIDPLKFNLLFERFLNPQRVSMP 401

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D DIDF  D+RD VI YV+ KYG + V+QIITFG+ +A+ A+RD  R + + Y   D++ 
Sbjct: 402  DIDIDFASDKRDMVIEYVKEKYGKDHVSQIITFGTFKARLAIRDCARVMGISYFIADKVA 461

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            K+IP      +   A+  +   ++    D +V +L+++++ +EG+ RHASTHAAG+VI  
Sbjct: 462  KMIPLMLGVTIE-SALNINHELKKLYDEDDTVKKLIDMAKTIEGMPRHASTHAAGVVISK 520

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595
              +   VP+Y  V+ D  V QF M  +E+ GL+K DFLGL TLT++Q+++D + + R + 
Sbjct: 521  NSVDSYVPLY--VQDDNIVAQFTMTTLEELGLLKMDFLGLGTLTIIQRTIDNIKKNRNIS 578

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            + L  I +DD + Y  + T  TLG+FQ+ESSGMR+ ++ ++P+ +ED+ A +SLYRPGP+
Sbjct: 579  LKLDEIDYDDKKVYEHIATGKTLGMFQIESSGMRKFMKELKPENLEDLTAGISLYRPGPM 638

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D+I  Y   K  ++ I  IH  + P+L  T+G++IYQEQVMQI + L+GYS   AD++RR
Sbjct: 639  DSIGDYIKNKEDEKNIKYIHEKLIPILSVTKGIMIYQEQVMQIVRDLAGYSYGSADLVRR 698

Query: 716  AMGKKIKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            AM KK  + M++++++F        I+G  KNGI +  A  IF+ +  FA+YGFNKSHAA
Sbjct: 699  AMSKKKMDVMEQERQKFVYGMESENIAGCVKNGIDEKTANKIFDYMIDFANYGFNKSHAA 758

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AY+VISYQTA++KT+YPVEF+A+ M++ + N +K+ ++  D ++  I+++ P VN    D
Sbjct: 759  AYSVISYQTAYLKTYYPVEFMASLMSMAIGNTDKVMEYKMDCQEMGIEVLAPDVNHSFSD 818

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F + D++I + L+A+KGVG   A +I E    +  + S ED   R+DS+ +N++V E+L+
Sbjct: 819  FSIEDDKIRFPLSALKGVGFAVASNIAEERGRNGRYISFEDLVERLDSRDINKKVAEALI 878

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITL 940
             +G+LD    +R   + + + I +     +KN      + F       ++ G   D   +
Sbjct: 879  KSGSLDSIIVNRASAMSNYERIIEGIHSTKKNMVQGQISFFNASISQGYKVGIAPD---I 935

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEE---SVATIR 991
            ++FS E   +    E+ +LGFY SG+PL+ Y+ ++++        IK   E   S   I 
Sbjct: 936  KEFSHE---ILLNMEKEILGFYISGNPLEKYQDLIKQRTNMTTTAIKEINEENTSQKVIE 992

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +++  M+   +   T+K + + ++T  +     E   FP
Sbjct: 993  TTKVKIIGMISKMKISTTKKNAMMAFITIEDLYSSVEVIVFP 1034


>gi|315639407|ref|ZP_07894567.1| DNA-directed DNA polymerase III alpha subunit [Campylobacter
           upsaliensis JV21]
 gi|315480512|gb|EFU71156.1| DNA-directed DNA polymerase III alpha subunit [Campylobacter
           upsaliensis JV21]
          Length = 1197

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/1002 (37%), Positives = 587/1002 (58%), Gaps = 55/1002 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YS+L+GA  L  +   +      ++A+TD  N+F A++F Q   + G++PI
Sbjct: 4   FTHLHLHTEYSMLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMRSHGLKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  +   D+L      +  F     + L      GY+ L+ L S+ Y+   G     
Sbjct: 64  IGLEAYLHNMDDLS-DKSSRQRF----HLCLYAKNEIGYKNLMYLSSQSYI--HGLYYYP 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180
                L E  +EGLI  +    G +        +R   F +   + A++  L +K++FGD
Sbjct: 117 RINKKLLEKHSEGLICSSACLQGEVNWHLNIYNERNVRFGAKGYEAAKEAALWYKRVFGD 176

Query: 181 RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y  + RH   D R  +  +++L+   ++ ++ATN++ +  +E  EAH+V M +     
Sbjct: 177 DFYFEIMRHGINDQRAIDDDIIRLSKELDIKIIATNDTHYTFKERAEAHEVFMCIGMGKR 236

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
           ++  DR R +  + Y+K   +M  +F+D+PEA+ NT ++A +C+  L++  P  P F   
Sbjct: 237 LNDPDRMRHSVKEFYVKTSEQMSELFADIPEAISNTQDLANKCNLELKLGDPTPPNFKFT 296

Query: 296 --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
               KE D    +E+ E           +    GLE RL    + +G H  +Y+ RL+ E
Sbjct: 297 REYAKEFDITLPQEKVEFSFENDDLVFEHLCRKGLEERLK--FVDEGKH-DEYKARLETE 353

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           + +I  MKFSGY LIV DFI+ AK  NIPVGPGRGS AGS+ AYAL ITDIDPL ++LLF
Sbjct: 354 IKIIKEMKFSGYMLIVHDFIKVAKDKNIPVGPGRGSAAGSLVAYALKITDIDPLPYNLLF 413

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           ERFLNP+R+SMPD D+DFC+DRRDEVI YV +KYG ++VAQ+ TF  L AK  +RDV R 
Sbjct: 414 ERFLNPERVSMPDIDVDFCRDRRDEVIDYVIDKYGSDKVAQVSTFNKLLAKGVIRDVARV 473

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
           L +    VD   KL+P +    +  +A   + + +E     P    L E ++ LEGL R+
Sbjct: 474 LDISLQDVDEFIKLVPEELKITLD-EAYEKEPKIKEFIEKHPKGKELWEYAKALEGLNRN 532

Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
           A  HAAG+VI +  L    P++R  ++D    +TQ++   +E   LIKFDFLGLKTLTL+
Sbjct: 533 AGMHAAGLVISNESLWNKTPLFRQSKNDERHLITQYSKDHLEDVDLIKFDFLGLKTLTLI 592

Query: 583 QKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
             ++  + +R  K +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593 HNAIKLIKERYNKDIVWESIDVNDSKVYKTIQSGNTLGIFQIESDGMQSLNARLKPENFE 652

Query: 642 DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
           D+IA+++LYRPGP+++ ++  + +RK+G +KI+    ++  +L+ T GVI+YQEQVMQI 
Sbjct: 653 DLIAVLALYRPGPMESGMLDDFIDRKHGLKKIIYPFDVLKEVLEPTYGVIVYQEQVMQIV 712

Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
           Q++ G+SL  ADV+RRAMGKK  E+M K K+ F +GA K G ++  A +++EL+ KFA Y
Sbjct: 713 QIIGGFSLGGADVVRRAMGKKDPEKMAKLKDEFANGAEKQGYNRAKAEDLWELIVKFAGY 772

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           GFNKSH+AAY +I++QTA++KT+YP EF+AA +T E + +E +  + ++ ++ NI+++PP
Sbjct: 773 GFNKSHSAAYGLITFQTAYLKTYYPSEFMAALLTSEQNKIENVAMYIEEMKKMNIKLLPP 832

Query: 820 SVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVD 873
            +N    +F       G   I Y L AIK VG     +++E  S +  F  L DF S++D
Sbjct: 833 RINKAISEFSAIKQEDGTEAIVYGLGAIKSVGGPAIENVLELRSKNGDFKDLHDFLSKID 892

Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
           + K+NRR LE  + AG+ D FG++R  L  +LD + + A+ + + R N   ++F  E+  
Sbjct: 893 TAKINRRTLEGFIKAGSFDDFGFTRKCLFNNLDTLAESARKMAEVRKNSASSLFGAEELN 952

Query: 934 FSDKITLEKFSVENSSV----RFENEQRVLGFYFSGHPLDVY 971
              KI +    V+NS      +   E+ +LG Y SGHPLD +
Sbjct: 953 ADTKINI---VVDNSEFEAMEKLGYEKEILGIYISGHPLDKF 991


>gi|326570853|gb|EGE20877.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis BC7]
          Length = 1240

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/1028 (38%), Positives = 579/1028 (56%), Gaps = 83/1028 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    AGI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY----LLDQG 125
            IIG ++ +    +       K       S++L   +  GYQ L+ L+S  Y    + + G
Sbjct: 62   IIGAEVVVGEHSD-------KDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 126  K---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT  S   I +    N+   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILTHRSE--IAQPLLGNNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYD-RYRESQVVQLA-------------YTHELPLVATNNSLFLSEEDYEAH 228
            Y+ ++R +  D ++ ES ++Q A             + H  P   TN+       D++AH
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASP-TETNDKNNTVSTDFDAH 231

Query: 229  DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            +  + +A+   ++   RPR  T   Y K++ +M  +F+DLP+A+ENT  +A RC+  + +
Sbjct: 232  EARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNITITL 291

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRL 341
               +LP F   + + I    E   +  +  GL  RL       Q         + Y +RL
Sbjct: 292  GINVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERL 347

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            D+EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + 
Sbjct: 348  DYELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYD 407

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV
Sbjct: 408  LLFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDV 467

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEIS 515
             R    P+   DR+ K+IP  P   + L+   D     +  L +P          + E++
Sbjct: 468  TRVQGKPFGLGDRISKMIPKTPG--IKLEDAFDQEPQLKELLTNPDAPDHELALEIWEMA 525

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            +KLEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLG
Sbjct: 526  KKLEGLTRNVGKHAGGVLIAPNRISDFSAIYCDGEGH-PVSQYDKDDVEAVGLVKFDFLG 584

Query: 576  LKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMR 629
            L+ LT+LQ ++D +     AQ    +DL  +P DD + Y  +L    T  +FQLESSGM+
Sbjct: 585  LRNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMK 644

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPML 682
            + L  ++P  IED+IA+ +LYRPGP+++ +V  + +RK+G +++   HP     L+ P L
Sbjct: 645  KYLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPL 704

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            + T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I 
Sbjct: 705  ESTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNID 764

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++
Sbjct: 765  GGLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQV 824

Query: 803  KKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK 860
                 D R  F + I+PPSVN     F V D + I Y L A+KGVG      I+ A  D 
Sbjct: 825  VFLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDG 884

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGAL----------------DCFGYSRMQLLQS 904
             F  L DFC+RVD KK+ +R LE+L+ AG                  DC    R  L + 
Sbjct: 885  AFKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQ 944

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L      A    +N+     ++F     +      LE    +    R   EQ  LG Y +
Sbjct: 945  LPEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDVYWQPQD-RLRYEQATLGLYLT 1003

Query: 965  GHPLDVYK 972
            GHPLD Y+
Sbjct: 1004 GHPLDEYR 1011


>gi|189485028|ref|YP_001955969.1| DNA polymerase III subunit alpha [uncultured Termite group 1
            bacterium phylotype Rs-D17]
 gi|170286987|dbj|BAG13508.1| DNA polymerase III subunit alpha [uncultured Termite group 1
            bacterium phylotype Rs-D17]
          Length = 1174

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/1050 (37%), Positives = 606/1050 (57%), Gaps = 73/1050 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSL-------NNILDKIAAD-QQPAIAITDTNNLFSALEFS 59
            +  FVHL  H+ YSLL+GA  L         + + IA + + PA+AITD  N++ A+EF 
Sbjct: 2    AAEFVHLHNHTEYSLLDGACRLIDDKGKPGELFNLIAKEYKMPALAITDHGNMYGAMEFY 61

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQRLIELVS 117
              A  +GI+PIIGC++ +  +      N  +     V    + LL    EGYQ L+ +VS
Sbjct: 62   LAAKQSGIKPIIGCEIYVAPKSRFDKKNINRITEDNVNYHHLTLLAKDFEGYQNLMRIVS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              +  +      R+    L++    GLI L+G  +G +  A    + + A+   + ++ +
Sbjct: 122  AGFT-EGFYYKPRVDKEVLKKYRC-GLIALSGCLAGEVASALVKGNKKKAQNAAIEYRDI 179

Query: 178  FG-DRLYVNLQRHRGYDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            F  D  Y+ +      D   E+Q      +++L+ +  +PLVATN+  FL +ED E HD+
Sbjct: 180  FDKDNFYIEIM-----DNGLETQKKIIPSLIELSKSAAIPLVATNDCHFLKKEDAEVHDI 234

Query: 231  LMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
            L+ +    ++++  R     D  Y ++  +M+  FS +PEA++NT+EIA + +  +    
Sbjct: 235  LLCIGTGKMLNETKRLHFDSDLFYYRSAEDMIKTFSSVPEAIKNTLEIAEKTNLEINTDK 294

Query: 290  PILPRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             +LP+F I KE     K +   L      GL  R             ++ +RL  EL+VI
Sbjct: 295  LLLPQFPIPKE----YKSDSEYLETLCRRGLAARYDT-------IKPEHEERLKHELSVI 343

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F+ YFLIV+DFI++AK + IPVGPGRGSG+G++ AY L ITDI PL++ LLFERFL
Sbjct: 344  NKMGFASYFLIVSDFIKYAKDHRIPVGPGRGSGSGAMVAYTLGITDICPLKYGLLFERFL 403

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NPDR SMPD DIDF    RDEVI+YV+ KYG E+ AQIITFGS+Q++  ++DV R +   
Sbjct: 404  NPDRRSMPDLDIDFADYGRDEVIQYVRRKYGEEKCAQIITFGSMQSRLVIKDVARVMGFT 463

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
             ++ + + KLIP + +   +LQA  D S+  +   AD  + +L+  SQKLEGL RH   H
Sbjct: 464  PAESNNIAKLIPQNASIAEALQASTDLSKLVK---ADEKIAKLIAASQKLEGLKRHTGVH 520

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+VI ++ ++   P+ +  + D+  TQ++   + + GL+K DFLGLKTLT++   + F
Sbjct: 521  AAGMVIANKEITSYSPLAKGSK-DIVTTQYDGGVLPQLGLLKIDFLGLKTLTIIDDCVKF 579

Query: 589  LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            + ++    +L  IP DD +TY LL    T+GIFQLES GMR  ++ ++P  I+DIIAL++
Sbjct: 580  IREKNPSFNLDNIPLDDKKTYELLGEAKTMGIFQLESIGMRDLIKKLKPSNIDDIIALIA 639

Query: 649  LYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            LYRPGP+ + ++ N  NRK+G+ KIV  HPL + +LK+T GVI+YQEQVM+++  L+G++
Sbjct: 640  LYRPGPMGSGMLDNFVNRKHGRTKIVYDHPLQESILKDTYGVILYQEQVMKMSVALAGFT 699

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
              EAD LR+AM KKI E ++KQ+E+F+ G  + G++K I+  IF  +  F  YGFNKSH+
Sbjct: 700  PGEADSLRKAMSKKIPEVIEKQREKFVRGTKEKGVNKKISEKIFNNIVAFGGYGFNKSHS 759

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEM------DNVE-KIKKFCQDARQFNIQIMPP 819
            AAY +ISY+TA++K +YP+E++ A    E+      +N E K+  +  DA  F+I+++PP
Sbjct: 760  AAYGIISYKTAYLKANYPLEYITALCNNEIGRPATKNNEESKLVAYLGDALAFDIKVLPP 819

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI----MEASADKPFDSLEDFCSRVDSK 875
             V      FK  D  I + + A+K VG      I    +E    K F    DF  R+D K
Sbjct: 820  DVQYSDGKFKTEDKNIRFGMLAVKNVGKGVTDSIEQSRIENGQLKSFKDWVDFLQRIDLK 879

Query: 876  KLNRRVLESLVFAGALDCFGYS----RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
             +N++ LESL+ AG  D FG      R +L+Q++D+    A  V++ R +    +F + K
Sbjct: 880  SINKKALESLIKAGVFDSFGKDKFTIRGRLIQNIDSYADKAAKVKQYRESLQGFLFDNVK 939

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE----ESV 987
                D ++L++            E+ VLGFY SGHPL       RK  I  Y     + +
Sbjct: 940  TITDDILSLQEVKPLEPLEALNFEKEVLGFYISGHPL-----THRKKDIIAYSNYRLDKL 994

Query: 988  ATIRGN----NIRLAAMVVS--KQQKKTRK 1011
              ++ N     +R+A M+VS  K    TRK
Sbjct: 995  PQLKENADRKTVRIAGMIVSVKKLTSTTRK 1024


>gi|295091058|emb|CBK77165.1| DNA polymerase III catalytic subunit, DnaE type [Clostridium cf.
            saccharolyticum K10]
          Length = 1159

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1052 (37%), Positives = 597/1052 (56%), Gaps = 51/1052 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+ +  +  ++ +       ++AITD   ++  ++F + A  AGI+P
Sbjct: 2    AFTHLHVHTEYSLLDASSKIKELVARAKELGMDSLAITDHGVMYGVIDFYRAAREAGIKP 61

Query: 70   IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++GC++ +       +    G+  +     ++LL    EGYQ L+++VS  ++ +     
Sbjct: 62   VLGCEIYVAPGSRFDREIGAGEDKYY---HLILLAENNEGYQNLMKIVSTGFV-EGFYYK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187
             R+    L+   + GLI L+   +G + R       +  +K  L ++ +FG+   ++ LQ
Sbjct: 118  PRVDFETLERY-SRGLICLSACLAGEVQRNLARGMYEEGKKAALRYQSIFGEGNFFLELQ 176

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H     +     +++++    +PLVATN+  ++  ED ++HD+L+ +     V+ ++R 
Sbjct: 177  DHGIPLQKTVNQGLLRMSQDTGIPLVATNDCHYIYREDEKSHDILLCIQTGKKVADENRM 236

Query: 247  RVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R     +YLK+  EM SIF    EALENT +IA RC+  ++     +P+F +        
Sbjct: 237  RYEGGQYYLKSEEEMKSIFPYALEALENTHKIAERCNVEIEFGVTKIPQF-DVPGGKTSW 295

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADF 363
            E  NEL  +   G   R         Y   D   R+RLD+EL+VI  M +  YFLIV DF
Sbjct: 296  EYLNELCEE---GFRTR---------YPDDDGTLRKRLDYELSVIQSMGYVDYFLIVWDF 343

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I +A+ ++I VGPGRGS AGS+ +Y L ITDIDP+R++LLFERFLNP+R+SMPD DIDFC
Sbjct: 344  IHFARSHDIMVGPGRGSAAGSIVSYCLRITDIDPIRYNLLFERFLNPERVSMPDIDIDFC 403

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR EVI YV  KYG +RV QI+TFG+L AK  +RDVGR L MPY++ D + K+IP D 
Sbjct: 404  FERRQEVIDYVVQKYGRDRVVQIVTFGTLAAKGVVRDVGRVLDMPYAKCDAVAKMIPGDL 463

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++L         REA  +DP +  L+++S++LEGL RH S HAAG+VI    + + V
Sbjct: 464  G--MTLDKALKTPELREAYDSDPEIKYLIDMSRRLEGLPRHTSMHAAGVVISRNKVDEYV 521

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+ R     +  TQF M  +E+ GL+K DFLGL+TLT++Q ++    +   +K+DL+ I 
Sbjct: 522  PLSRAADGSI-TTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVRQAEKTHHIKIDLNKID 580

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            ++D      L T    G+FQLESSGM+  ++ ++P+ +EDIIA +SLYRPGP+D I  Y 
Sbjct: 581  YNDKAVLESLGTGKNDGVFQLESSGMKSFMKELKPENLEDIIAGISLYRPGPMDFIPKYL 640

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              KN +  I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D++RRAM KK  
Sbjct: 641  KGKNDRASITYDCPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKA 700

Query: 723  EEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              M+K+++ F        + G   NGI +  A  I++ +  FA Y FNKSHAAAYAV+SY
Sbjct: 701  AVMEKERQNFVYGNPEEGVKGCIANGIDEKTANTIYDEMIDFAKYAFNKSHAAAYAVVSY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEF+AA MT   DNV K+ ++    RQ  ++IMPP +N     F V +  
Sbjct: 761  QTAYLKYYYPVEFMAALMTSVKDNVSKVSEYILTCRQMGMKIMPPDINEGEGGFSVSNGA 820

Query: 835  IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L+A+K +G T    I++   ++ PF SL DF  R+ +K++N+R +ES + +GALD 
Sbjct: 821  IRYGLSALKSIGQTVVDEIVKERTERGPFVSLADFIDRMSNKEVNKRTIESFIKSGALDS 880

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSVENSS 949
               +R Q       + +     +KN      ++F      EK  F  +IT          
Sbjct: 881  LPGTRKQKFLVSAALLEQKNKEKKNSMEGQMSLFDFVEEEEKEQF--QITFPDVGEYTKE 938

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMG-------IKGYEESVATIR-GNNIRLAAMV 1001
                 E+ +LG Y SGHPL+ Y  + +K         I   EE  A +R G+ + +  M+
Sbjct: 939  ELLAFEKEMLGVYVSGHPLEEYMDLWKKNVTAVSSDFIVDEEEGHAKVRDGSYVTIGGMI 998

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              K  K TR+   + ++T  + A   E   FP
Sbjct: 999  TEKTVKTTRQNKMMAFITVEDLAGTVEVLIFP 1030


>gi|313892071|ref|ZP_07825669.1| putative DNA polymerase III subunit alpha [Dialister microaerophilus
            UPII 345-E]
 gi|313119523|gb|EFR42717.1| putative DNA polymerase III subunit alpha [Dialister microaerophilus
            UPII 345-E]
          Length = 1138

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/1038 (37%), Positives = 590/1038 (56%), Gaps = 40/1038 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YSL +G   +  ++  +    Q AIAITD   ++ A+   ++    GI+P
Sbjct: 3    SFVHLHSHTEYSLFDGISRIKELVSYVKELGQQAIAITDHGAMYGAVYLYKECMKQGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +      K  N  K     +  ++LL    EGYQ LI++ S+ ++ +      
Sbjct: 63   IIGCELYVTADSRFKKGNAFK---EKLGHLILLAENNEGYQNLIKICSKAWV-EGYYVKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L++  ++G+I LT    G I +A      + A K    +   FG +  ++ LQ 
Sbjct: 119  RVDHDLLRKY-SKGIIALTSCIGGEIPQAILNGDKEKARKLTEFYIDTFGRNNFFLELQN 177

Query: 189  HRGYDRYRESQVVQL-AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +     Q + L A  + L LVATN+  ++ +ED ++H++ + ++    +   D P 
Sbjct: 178  HGMPEEAIVRQELSLIAKEYNLGLVATNDFHYVRKEDAKSHEIKLCISTGNTL---DNPN 234

Query: 248  ----VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                   + Y K+  EM S+  + P A+ENT  IA RC+  L      LP + +  C   
Sbjct: 235  HFAFANNEFYCKSGEEMKSLLGEFPGAIENTKIIAERCNVKLTFGKHKLPSY-DVPC--- 290

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQ-RLDFELNVIARMKFSGYFLIVA 361
                      +  A    +L   A+ K Y H  D  + RL++ELN+I +M FS YFLIV 
Sbjct: 291  ---------GETAATYLRKLCFDALPKRYPHFNDKEESRLNYELNIINQMGFSDYFLIVM 341

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++AK   IP+GPGRGS AGS+ AY L IT+IDPLRF LLFERFLNP+R+SMPD D D
Sbjct: 342  DFIRYAKNKGIPIGPGRGSAAGSIVAYLLDITEIDPLRFDLLFERFLNPERVSMPDIDTD 401

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
             C  RR E+I Y+++KYG E+VAQIITFG+L A+A +RDVGR + +P  +VDR+ K+IP 
Sbjct: 402  LCYRRRGEIIEYLKSKYGEEQVAQIITFGTLAARAVIRDVGRVMSIPLKEVDRIAKMIPG 461

Query: 482  DPAHPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V+L++  + SR F      + +V  L+E   KLEGL R + THAAG+VI  +P+ 
Sbjct: 462  GPG--VTLKSTLESSRDFLNEYENNNTVRTLVEHCIKLEGLSRQSGTHAAGVVICSKPVY 519

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
            + VP+ +  + D   TQ+     E+ GL+K D LGL+ LT++  +L  + + RG+ V + 
Sbjct: 520  EYVPI-QLTQDDFIQTQYEKDLDEELGLLKMDLLGLRNLTVIHDTLQMIKENRGITVKMY 578

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I   D +T ++L    T+G+FQ ES G    L  + P+  ED+I +V+LYRPGP+ + +
Sbjct: 579  EIDDSDAKTCNMLCMGDTVGVFQSESDGFTNLLMQLHPERFEDLIPMVALYRPGPLGSGM 638

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
               + NRK+GK K+   HP ++ +LKET GVI+YQEQVMQIA  + G++L ++D+LRRAM
Sbjct: 639  AEDFINRKHGKTKVDYPHPSLEKILKETYGVILYQEQVMQIASEMGGFTLGQSDLLRRAM 698

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            G K  E +  Q+E F+ GA   GI K+I+ ++F+L+  FA YGFNKSH+  Y  I+++TA
Sbjct: 699  GHKEPEILQAQRELFVKGAEGKGIDKSISNHVFDLMVHFAGYGFNKSHSVCYGRIAWETA 758

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K ++  EF+A+ MT  + ++ K+ ++ ++ R+  I+++ P +N     F V    I +
Sbjct: 759  YLKANFRPEFMASMMTCYIGDINKVNRYIENTRKAGIKVLAPDINKSQAYFSVKGENIIF 818

Query: 838  SLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+ I+ VG     HI+E+   K  F  L D   R+DSK LN R  ESL+  GALDCFGY
Sbjct: 819  GLSGIQNVGENAVNHIIESRNKKGDFKDLIDLLERIDSKILNSRACESLIKCGALDCFGY 878

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R QLL  LD+    A     +R    +N+FA  +     +I        +   +   E+
Sbjct: 879  DRSQLLAVLDDAINIAASGRFDRDAGQQNLFAESE--IIREIDYPDIEPMSKKEKLHWEK 936

Query: 957  RVLGFYFSGHPLDVYKPILRK-MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            ++LGFY SGHPLD Y  ++   +  K ++ +     G  + +  +V   ++  T+KG  +
Sbjct: 937  KLLGFYVSGHPLDEYSDMIESFVKSKVFDNNDIDYDGRIVTMCGIVTRVKKTITKKGLSM 996

Query: 1016 GWVTFSEPAKEYEANFFP 1033
            G+ T  +   E+E   FP
Sbjct: 997  GYATLEDYDGEFECVIFP 1014


>gi|153951559|ref|YP_001398338.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939005|gb|ABS43746.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 1200

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/1001 (38%), Positives = 587/1001 (58%), Gaps = 55/1001 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4   FTHLHLHTEYSLLDGANKLKELALTLKKQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  +   D L      +  F     + L      GYQ L+ L S+ Y+  +G     
Sbjct: 64  IGMEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180
                L E   EGLI  +    G +        +R   F +   + A++  L +KK+F D
Sbjct: 117 RINKKLLEDYNEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y  + RH  G  R  +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
           ++  DR R +  + Y+K+  +M  +F D+PEA+ENT E+A++C+  L +  P  P F   
Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFVDIPEAIENTQEVAQKCNLELNLGNPTPPNFKFT 296

Query: 296 --IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDFE 344
               K+ +    EE  E    N  +        GLE RL    I +  H ++Y+QRL+ E
Sbjct: 297 REYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEERLK--FIDESKH-EEYKQRLEVE 353

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523
             M     D L KL+P +    ++L A  + + + +E     P    + E ++ LEGL R
Sbjct: 474 CDMSIQDADELAKLVPEELK--ITLDAAYEKEPKIKEFIDRHPKGPEVWEYARALEGLNR 531

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581
           +A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT+
Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591

Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           +  ++  + +R  K +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  
Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
           EDIIA+++LYRPGP+++ ++  + +RK+G + I      ++ +L+ T GVI+YQEQVMQI
Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A ++++L+ KFA 
Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWDLIVKFAG 771

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E + V+KI  +  + ++ NI+++P
Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENKVDKIAVYIDEMKKMNIKLLP 831

Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
           PS+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D 
Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIAPVENLLEARQDGEFKDINDFLGKIDP 891

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            K+NRR LE+L+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T 
Sbjct: 892 AKINRRTLENLIKAGAFDEFGFTRKALFDNIENLTEASRKIAEVRKNAASSLFGEEELTS 951

Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             ++      E+F V     +   E+ +LG Y SGHPLD +
Sbjct: 952 GVQVNFIPKNEEFEVME---KLGYEKEILGIYVSGHPLDRF 989


>gi|229163596|ref|ZP_04291545.1| DNA polymerase III subunit alpha [Bacillus cereus R309803]
 gi|228619846|gb|EEK76723.1| DNA polymerase III subunit alpha [Bacillus cereus R309803]
          Length = 1105

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/1030 (36%), Positives = 607/1030 (58%), Gaps = 57/1030 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPII
Sbjct: 1    MHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPII 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   I
Sbjct: 61   GLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               WL     +GLI ++ G  G I++    +    AE+   T++ +FGD  Y++LQ H  
Sbjct: 106  PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARTYQNMFGD-FYISLQHHAI 163

Query: 192  YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  
Sbjct: 164  QDELLLQEKLPEFINKVNIPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRLKT 223

Query: 251  D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D +YLK+  EM ++FS   EA+ NT +IA RC   +  H   LP++       +   E N
Sbjct: 224  DQYYLKSSDEMGALFSQAEEAIYNTAKIAERCHVEIPFHVNQLPKY------PVPSSETN 277

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            +   + V    +R   GA  K  H Q    RL+ ELNVI+ M FS YFLIV DF+++A +
Sbjct: 278  DTYLRRVCEEGMRKRYGA-PKEVHIQ----RLNHELNVISSMGFSDYFLIVWDFMKYAHE 332

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE
Sbjct: 333  NHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDE 392

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            +IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     ++L
Sbjct: 393  MIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--ITL 450

Query: 490  QAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            +   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  + + ++
Sbjct: 451  KDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSIAI-QE 509

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ ++ G ++D+  +P  D +
Sbjct: 510  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKQIDIRKLPLQDEK 569

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 570  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 629

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 630  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 689

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  KNG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 690  ERKHFVQGCLKNGYEETSANKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 749

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 750  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 809

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 810  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGISRTNLWKSLKG 869

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGFYF 963
              +YA               A + G   D +   K+ V+   + F      E+  LGFY 
Sbjct: 870  ALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALGFYL 912

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF + 
Sbjct: 913  SSYPTAQYVKLGKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITFCDQ 971

Query: 1024 AKEYEANFFP 1033
              E EA  FP
Sbjct: 972  NDEMEAVLFP 981


>gi|326559241|gb|EGE09672.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis 46P47B1]
          Length = 1240

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/1030 (38%), Positives = 581/1030 (56%), Gaps = 87/1030 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    AGI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY----LLDQG 125
            IIG ++ +    +       K       S++L   +  GYQ L+ L+S  Y    + + G
Sbjct: 62   IIGAEVVVGEHSD-------KDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 126  K---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT  S   I +    ++   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILTHRSE--IAQPLLSHNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYD-RYRESQVVQLA-------------YTHELPLVATNNSLFLSEEDYEAH 228
            Y+ ++R +  D ++ ES ++Q A             + H  P   TN+       D++AH
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASP-TETNDKNNTVSTDFDAH 231

Query: 229  DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            +  + +A+S  ++   RPR  T   Y K++ +M  +F+DLP+A+ENT  +A RC+  + +
Sbjct: 232  EARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNVTITL 291

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVA--GLEVRLA------QGAIAKGYHAQDYRQ 339
               +LP F       I K E  E   K V+  GL  RL       Q         + Y +
Sbjct: 292  GINVLPDF------PIPKGETIETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDE 345

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RLD+EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL 
Sbjct: 346  RLDYELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLS 405

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            + LLFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +R
Sbjct: 406  YDLLFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVR 465

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLE 513
            DV R    P+   DR+ K+IP  P   + L+   D     +  L +P          + E
Sbjct: 466  DVTRVQGKPFGLGDRISKMIPKTPG--IKLEDAFDQEPQLKELLTNPDAPDHELALEIWE 523

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
            +++KLEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDF
Sbjct: 524  MAKKLEGLTRNVGKHAGGVLIAPNHISDFSAIYCDGEGH-PVSQYDKDDVEAVGLVKFDF 582

Query: 574  LGLKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSG 627
            LGL+ LT+LQ ++D +     AQ    +DL  +P DD + Y  +L    T  +FQLESSG
Sbjct: 583  LGLRNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSG 642

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDP 680
            M++ L  ++P  IED+IA+ +LYRPGP+++ +V  + +RK+G +++   HP     L+ P
Sbjct: 643  MKKYLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQP 702

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
             L+ T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  
Sbjct: 703  PLESTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQN 762

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            I   +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +
Sbjct: 763  IDGGLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTD 822

Query: 801  KIKKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASA 858
            ++     D R  F + I+PPSVN     F V D + I Y L A+KGVG      I+ A  
Sbjct: 823  QVVFLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARK 882

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL----------------DCFGYSRMQLL 902
            D  F  L DFC+RVD KK+ +R LE+L+ AG                  DC    R  L 
Sbjct: 883  DGAFKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLW 942

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            + L      A    +N+     ++F     +      LE    +    R   EQ  LG Y
Sbjct: 943  RQLPEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDVYWQPQD-RLRYEQATLGLY 1001

Query: 963  FSGHPLDVYK 972
             +GHPLD Y+
Sbjct: 1002 LTGHPLDEYR 1011


>gi|195953981|ref|YP_002122271.1| DNA polymerase III, alpha subunit [Hydrogenobaculum sp. Y04AAS1]
 gi|195933593|gb|ACG58293.1| DNA polymerase III, alpha subunit [Hydrogenobaculum sp. Y04AAS1]
          Length = 1201

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1088 (38%), Positives = 607/1088 (55%), Gaps = 84/1088 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSLL+GA+ + ++  K       A+AITD  NLF  + F ++  A GI+PI
Sbjct: 4    FVHLHLHTQYSLLDGAIKIKDLAKKAKEYGYKAVAITDHGNLFGTMSFYKEMKANGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS-----IVLLVSTAEGYQRLIELVSRMYLLDQG 125
            IG  ++       +  ++GK     +       I+LL     G + L++L S +  ++  
Sbjct: 64   IG--MEAYFTTGKRTEHKGKGSEDNITDRINHHIILLAKNDTGLKNLMKL-SSIAFIEGF 120

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                RI    L++   EGLI LT    G         + ++A   +  FK +FGD LY+ 
Sbjct: 121  YYKPRIDYEVLEQ-HAEGLIALTACLKGVPTFYAAQGNEEMAYNWVKKFKDIFGDDLYLE 179

Query: 186  LQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-- 242
            LQ  H          ++ +A  + +   ATN+  +L EED  AH+VLMA+     + +  
Sbjct: 180  LQSNHIPAQETANKTLIDIAKRYNVKFAATNDCHYLLEEDLRAHNVLMAIQMKKTLQELG 239

Query: 243  KDRPRVTPDHYLKNRSEMVSIF----SDLPEALENTVEIARRCS---FILQVHAPILPRF 295
            +D        +  +  EMV  F    S+  +AL NTVEI+ + +    I +  +   P F
Sbjct: 240  EDAFGHYDGMHFASYEEMVKKFEGKWSEWEKALLNTVEISEKVADSLSIFEDKSYKFPEF 299

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
             +   DDI     + LRN AV GL+ R+ +  I+K    ++Y  RL++EL VI  M F  
Sbjct: 300  FK--GDDINVNISSYLRNLAVEGLKSRIQKSQISKNIPEKEYWDRLNYELEVIQNMGFDS 357

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV+DFI W+K NNIPVGPGRGS AGS+ A+AL ITD+DPL+  L+FERFLNP+R+SM
Sbjct: 358  YFLIVSDFINWSKSNNIPVGPGRGSAAGSLVAFALNITDVDPLKHGLIFERFLNPERISM 417

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DFC D RD+VI YV+ KYG + VAQIIT+ +++AK  LRDV RA+ M Y   D L
Sbjct: 418  PDIDVDFCMDNRDKVIEYVKEKYGKDSVAQIITYNTMKAKQTLRDVARAMGMAYKDADVL 477

Query: 476  CKLIP--NDPAHPVSLQA------------------IADD-SRFREARLADPSVDRLLEI 514
             KLIP  N     +SL+                   I D+  +FR+    DP +  L+EI
Sbjct: 478  AKLIPQGNVQGTWLSLEEMYITPIEELMERYGHRGDIEDNVKKFRDLAKKDPQIKELVEI 537

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD--VRSDLP--VTQFNMKWIEKAGLIK 570
            S KLEGL RH S HAAGIVI  +PL +L P+Y D  V+ D     TQ++M  +E+ GL+K
Sbjct: 538  SIKLEGLTRHTSLHAAGIVIAPKPLIELAPLYLDKSVKDDTGNIATQYDMAHLEELGLVK 597

Query: 571  FDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             DFLGLKTLT L K  + + Q +GV +D   + F++ E Y  L T  T+G+FQLES GMR
Sbjct: 598  MDFLGLKTLTELWKMKELVKQNKGVDIDFLSLDFNNKEIYEFLATGETIGVFQLESKGMR 657

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQG 687
            + ++ ++PD  EDI+A ++LYRPGPI + +V  + NRK GKEK+V     ++ +LKET G
Sbjct: 658  ELIKRLKPDRFEDIVAALALYRPGPIKSGMVDKFINRKLGKEKVVYEFEELEEVLKETYG 717

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQ+M I+ +L+G+++ EAD LR+A+GKK  + M K K+ FI  + + G  K    
Sbjct: 718  LIVYQEQIMFISNILAGFTMGEADNLRKAIGKKKADLMAKIKDDFIRRSCERGYPKDKIE 777

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++  + +FA Y FNKSH+ AY  IS+ TA++K +YP EF A   + E  + +K     +
Sbjct: 778  KLWSEIEEFASYSFNKSHSVAYGYISFWTAYVKLYYPDEFYAVKFSTENSD-KKFINLLK 836

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHI--MEASADKPFDS 864
            DA+ F I+++PP VN   VDFK+   R I + L  IKGVG  TARHI  M+    + F S
Sbjct: 837  DAKSFGIKVLPPDVNKSDVDFKIEVPRHIRFGLGRIKGVGEDTARHIKSMQEKIGRDFLS 896

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCF----GY-SRMQLLQSLDNIQKYAQWVEKNR 919
             +DF    D++K+N++VLE+L  AGA D      GY +R   L  L N Q  +   ++  
Sbjct: 897  FQDFTKNTDNRKVNKKVLEALSKAGAFDSLIEKSGYKNREDFLSRLLNSQDISSIAQR-- 954

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL-RKM 978
                 ++F    G  + K T E+    +S    + E+ VLGFY SGHPLD Y  IL    
Sbjct: 955  -----SLF----GIKASKST-EQMEQSSSIDILKLEKEVLGFYISGHPLDKYSWILSHNK 1004

Query: 979  GIKGYEE---------SVATIRGNNIR----LAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             I   E+         ++ +  G N      +  ++   Q KKT+ GS +      +   
Sbjct: 1005 DITNIEDIDFDNMPNQAIDSEAGQNASAEYTIVGVISDLQIKKTKNGSYMAIFNLVDKTD 1064

Query: 1026 EYEANFFP 1033
              E   FP
Sbjct: 1065 IVEVVVFP 1072


>gi|242310657|ref|ZP_04809812.1| DNA polymerase III alpha subunit [Helicobacter pullorum MIT 98-5489]
 gi|239523055|gb|EEQ62921.1| DNA polymerase III alpha subunit [Helicobacter pullorum MIT 98-5489]
          Length = 1172

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/1038 (36%), Positives = 609/1038 (58%), Gaps = 52/1038 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+G   +  +  +I      ++AITD  N+F A+EF +     GI+PI
Sbjct: 16   FTHLHLHTEYSLLDGLNKIKILAKRIKELGMDSVAITDHGNMFGAIEFYKAMKEQGIKPI 75

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  ++  + +  +++++    F     + L     +GY+ L+ L S+  L     +  R
Sbjct: 76   LG--MEAYLHNAEEISDKSNQRF----HLCLYAKNLQGYKNLMYLSSQACLYGYYMKP-R 128

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPID------------RAFFFNSSQVAEKRLLTFKKLF 178
            I    L+E  +EGLI  +   +G +             R  +  + +VA    L +K++F
Sbjct: 129  ISKKMLRE-HSEGLICSSACLNGEVQWHLNLKKEDNKGRKGYERAKEVA----LEYKEIF 183

Query: 179  GDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            GD  Y+ L RH G +  +  + Q++Q++    + ++ATN++ + ++ D  A +V   +  
Sbjct: 184  GDDFYLELMRH-GIEEQQLIDKQIIQISLETGIKIIATNDTHYTNQGDSTAQEVAFCIGF 242

Query: 237  STVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                +  +R R T  + Y+K+  +M  ++ DLPEA+ NT EIA +C+  L +  P  P F
Sbjct: 243  GKDFNDPNRMRHTVQEFYIKSPEQMAKLYMDLPEAIANTKEIADKCNLELHLGDPTPPSF 302

Query: 296  ------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                   + E  D  ++ E     K   GL+ RL    +    H Q+Y++RL+ E+ +I 
Sbjct: 303  KFTAEYAKAENLDFTQDSEY-FAYKCREGLKKRLEN--VESSRH-QEYKERLEKEIEIIN 358

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +MKF GY LIV DF++ AK+  IPVGPGRGS AGS+ A+ L IT+IDP+++ LLFERFLN
Sbjct: 359  KMKFPGYMLIVWDFVRAAKERGIPVGPGRGSAAGSLVAFCLEITNIDPMKYDLLFERFLN 418

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPD D+DFCQ RR+E++ YV +KYG   VAQ+ITFG ++AKA +RDV R + MPY
Sbjct: 419  PERVSMPDIDMDFCQSRREEILEYVTDKYGRHNVAQVITFGMMKAKAVIRDVARVMGMPY 478

Query: 470  SQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
             + D   KLIP +    ++L+ A   + + +E    DP   ++ + +  LE   R+  TH
Sbjct: 479  GEADAFAKLIPKEL--DITLEKAFEKEPKIKELIDKDPLAKKIWDFAVVLENTKRNPGTH 536

Query: 529  AAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            AA +VI  +  L    P+YR  R  +  TQ++MK++E   LIKFDFLGLKTLTL+  +L 
Sbjct: 537  AAAVVIDSEHELWHKAPLYRSTRDGIIATQYSMKYLEDVDLIKFDFLGLKTLTLVDDALK 596

Query: 588  FLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             +  R  +++D   +  +D + Y  L +  TLGIFQ+ESS  +   + ++P   EDIIA+
Sbjct: 597  LIKNRHNLEIDFLKLDVNDKKVYETLQSGNTLGIFQIESSMFQGINKRLRPSTFEDIIAI 656

Query: 647  VSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ++L RPGP+++ +V  + +RK+GK  IV + P ++ +L+ T G I+YQEQVMQI Q + G
Sbjct: 657  IALGRPGPMESGMVSDFIDRKHGKAPIVYMFPELESILRPTYGTIVYQEQVMQIVQKIGG 716

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            +SL EAD++RRAMGKK  + M   K +F  GA K G ++  A  ++EL+ KFA YGFNKS
Sbjct: 717  FSLGEADLIRRAMGKKDAQIMADNKNKFAQGAEKQGFNRAKAEELWELIVKFAGYGFNKS 776

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA+I+++TA++KT+YP EF+AA +T E ++ +KI ++ ++A + +I+++PP++   
Sbjct: 777  HSAAYAMITFETAYLKTYYPKEFMAALLTSEKNSTDKIVEYIEEANKMDIKVLPPNIQKS 836

Query: 825  CVDFKVG----DNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNR 879
             ++F V     ++ I + L AIKG G      I+E   +   F  LEDF SR+D +K+N+
Sbjct: 837  ELEFSVARIDDEDCILFGLGAIKGAGEVAINIILEERKNNGDFKDLEDFLSRIDPQKVNK 896

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            + LE+ + +GA+DCFGY+R  LL+ ++ + + A+  +  +     ++F   +   +  + 
Sbjct: 897  KSLEAFIKSGAMDCFGYTRRTLLEQVELLTENAKTAQIAKKEAENSLFGDSEEFTAIALE 956

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLA 998
            LE     +     E E+  LGFY SGHPL+ YK I++ +    Y   +  I  N +I L 
Sbjct: 957  LENKEEYSKKEILEFEKESLGFYASGHPLEDYKEIIKSINC-AYTNQIQDIAENSSILLV 1015

Query: 999  AMVVSKQQKKTRKGSRIG 1016
              +     K ++ G R G
Sbjct: 1016 GSIEDVITKFSKSGKRYG 1033


>gi|326570115|gb|EGE20160.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis BC8]
          Length = 1240

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1028 (38%), Positives = 579/1028 (56%), Gaps = 83/1028 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    AGI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY----LLDQG 125
            IIG ++ +    +       K       S++L   +  GYQ L+ L+S  Y    + + G
Sbjct: 62   IIGAEVVVGEHSD-------KDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 126  K---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT  S   I +    N+   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILTHRSE--IAQPLLGNNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYD-RYRESQVVQLA-------------YTHELPLVATNNSLFLSEEDYEAH 228
            Y+ ++R +  D ++ ES ++Q A             + H  P   TN+       D++AH
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASP-TETNDKNNTVSTDFDAH 231

Query: 229  DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            +  + +A+   ++   RPR  T   Y K++ +M  +F+DLP+A++NT  +A RC+  + +
Sbjct: 232  EARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNITITL 291

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRL 341
               +LP F   + + I    E   +  +  GL  RL       Q         + Y +RL
Sbjct: 292  GINVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERL 347

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            D+EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + 
Sbjct: 348  DYELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYD 407

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV
Sbjct: 408  LLFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDV 467

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEIS 515
             R    P+   DR+ K+IP  P   + L+   D     +  L +P          + E++
Sbjct: 468  TRVQGKPFGLGDRISKMIPKTPG--IKLEDAFDQEPQLKELLTNPDAPDHELALEIWEMA 525

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            +KLEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLG
Sbjct: 526  KKLEGLTRNVGKHAGGVLIAPNSISDFSAIYCDGEGH-PVSQYDKDDVEAVGLVKFDFLG 584

Query: 576  LKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMR 629
            L+ LT+LQ ++D +     AQ    +DL  +P DD + Y  +L    T  +FQLESSGM+
Sbjct: 585  LRNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMK 644

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPML 682
            + L  ++P  IED+IA+ +LYRPGP+++ +V  + +RK+G +++   HP     L+ P L
Sbjct: 645  KYLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPL 704

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            + T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I 
Sbjct: 705  ESTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNID 764

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++
Sbjct: 765  GGLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQV 824

Query: 803  KKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK 860
                 D R  F + I+PPSVN     F V D + I Y L A+KGVG      I+ A  D 
Sbjct: 825  VFLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDG 884

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGAL----------------DCFGYSRMQLLQS 904
             F  L DFC+RVD KK+ +R LE+L+ AG                  DC    R  L + 
Sbjct: 885  AFKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQ 944

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L      A    +N+     ++F     +      LE    +    R   EQ  LG Y +
Sbjct: 945  LPEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDVYWQPQD-RLRYEQATLGLYLT 1003

Query: 965  GHPLDVYK 972
            GHPLD Y+
Sbjct: 1004 GHPLDEYR 1011


>gi|229198755|ref|ZP_04325451.1| DNA polymerase III subunit alpha [Bacillus cereus m1293]
 gi|228584688|gb|EEK42810.1| DNA polymerase III subunit alpha [Bacillus cereus m1293]
          Length = 1105

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/1032 (36%), Positives = 607/1032 (58%), Gaps = 61/1032 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PII
Sbjct: 1    MHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPII 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   I
Sbjct: 61   GLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               WL     +GLI ++ G  G I++    +    AE+    ++ +FG   Y++LQ H  
Sbjct: 106  PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYQNMFGS-FYMSLQHHAI 163

Query: 192  YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             D    + ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  
Sbjct: 164  QDELLLQEKLPAFMNRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223

Query: 251  D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F       +   E N
Sbjct: 224  DQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNETN 277

Query: 310  E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR     GL+ R        G   + + +RL+ ELNVI+ M FS YFLIV DF+++A
Sbjct: 278  DMYLRRVCEEGLQKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RR
Sbjct: 331  HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRR 390

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +
Sbjct: 391  DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448

Query: 488  SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V + 
Sbjct: 449  TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+ G ++D+  +P  D
Sbjct: 508  QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQD 567

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K
Sbjct: 568  EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GK +I  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +
Sbjct: 628  HGKRQIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +
Sbjct: 688  DQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +
Sbjct: 748  EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL
Sbjct: 808  GMATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSL 867

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961
                +YA               A + G   D +   K+ V+   + F      E+ VLGF
Sbjct: 868  KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLGF 910

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF 
Sbjct: 911  YLSSYPTAQYVKLAKELEIPTLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITFC 969

Query: 1022 EPAKEYEANFFP 1033
            +   E EA  FP
Sbjct: 970  DQNDEMEAVLFP 981


>gi|296113397|ref|YP_003627335.1| DNA polymerase III alpha subunit [Moraxella catarrhalis RH4]
 gi|295921091|gb|ADG61442.1| DNA polymerase III alpha subunit [Moraxella catarrhalis RH4]
          Length = 1240

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/1028 (38%), Positives = 579/1028 (56%), Gaps = 83/1028 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    AGI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY----LLDQG 125
            IIG ++ +    +       K       S++L   +  GYQ L+ L+S  Y    + + G
Sbjct: 62   IIGAEVVVGEHSD-------KDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 126  K---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT  S   I +    N+   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILTHRSE--IAQPLLGNNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYD-RYRESQVVQLA-------------YTHELPLVATNNSLFLSEEDYEAH 228
            Y+ ++R +  D ++ ES ++Q A             + H  P   TN+       D++AH
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASP-TETNDKNNTVSTDFDAH 231

Query: 229  DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            +  + +A+   ++   RPR  T   Y K++ +M  +F+DLP+A++NT  +A RC+  + +
Sbjct: 232  EARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNITITL 291

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRL 341
               +LP F   + + I    E   +  +  GL  RL       Q         + Y +RL
Sbjct: 292  GINVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERL 347

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            D+EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + 
Sbjct: 348  DYELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYD 407

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV
Sbjct: 408  LLFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDV 467

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEIS 515
             R    P+   DR+ K+IP  P   + L+   D     +  L +P          + E++
Sbjct: 468  TRVQGKPFGLGDRISKMIPKTPG--IKLEDAFDQEPQLKELLTNPDAPDHELALEIWEMA 525

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            +KLEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLG
Sbjct: 526  KKLEGLTRNVGKHAGGVLIAPNRISDFSAIYCDGEGH-PVSQYDKDDVEAVGLVKFDFLG 584

Query: 576  LKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMR 629
            L+ LT+LQ ++D +     AQ    +DL  +P DD + Y  +L    T  +FQLESSGM+
Sbjct: 585  LRNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDTDVYTSVLQEAKTSAVFQLESSGMK 644

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPML 682
            + L  ++P  IEDIIA+ +LYRPGP+++ +V  + +RK+G +++   HP     L+ P L
Sbjct: 645  KYLAQLKPSNIEDIIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPL 704

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            + T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I 
Sbjct: 705  ESTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNID 764

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++
Sbjct: 765  GGLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQV 824

Query: 803  KKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK 860
                 D R  F + I+PPSVN     F V D + I Y L A+KGVG      I+ A  D 
Sbjct: 825  VFLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDG 884

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGAL----------------DCFGYSRMQLLQS 904
             F  L DFC+RVD KK+ +R LE+L+ AG                  DC    R  L + 
Sbjct: 885  AFKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQ 944

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L      A    +N+     ++F     +      LE    +    R   EQ  LG Y +
Sbjct: 945  LPEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDVYWQPQD-RLRYEQATLGLYLT 1003

Query: 965  GHPLDVYK 972
            GHPLD Y+
Sbjct: 1004 GHPLDEYR 1011


>gi|171463884|ref|YP_001797997.1| DNA polymerase III, alpha subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193422|gb|ACB44383.1| DNA polymerase III, alpha subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 1205

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/1018 (38%), Positives = 580/1018 (56%), Gaps = 77/1018 (7%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P FVHL+VHS +S+ +G + +++ +     D   A+AITD +NLF  + F   A ++GI+
Sbjct: 4   PRFVHLRVHSEFSITDGVVRIDDAVAAAVKDGMGALAITDLSNLFGLVRFYTAARSSGIK 63

Query: 69  PIIGCQLDI-DMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           PI G  + I + QD            P  P  ++LLV    GY  L EL+SR  L +Q +
Sbjct: 64  PITGADVWISNPQD------------PDQPHRLLLLVQNHSGYLNLCELLSRASLDNQSR 111

Query: 127 QSVRICLSWLQEIGTE------------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
               +  +W  E   +            GLI L+G   G +  A     +  A+     +
Sbjct: 112 GRAEVDSAWFSEPAAKTEDKAAKRTLPYGLIALSGARMGEVGAALLAGQADQAKIVARRY 171

Query: 175 KKLFGDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           +KLF    Y+ +QR       R  Q+   LA   +LP+VAT+   F+   D+ AH+  + 
Sbjct: 172 EKLFPKSFYIEVQRGGNPQDERHLQLACHLASELDLPVVATHPVQFMQRSDFTAHEARVC 231

Query: 234 VAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
           +A   ++    R +    + Y   + EM   F+DLP AL N+VEIA+RC+  L +  P L
Sbjct: 232 IAEGELLGNPRRTKKFNEEQYFLTQEEMEKRFADLPVALANSVEIAKRCNLSLVLGQPRL 291

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIA 349
           P F       +    +  L  ++  GLE  + +        A++   Y +RL FE+  I+
Sbjct: 292 PDFPTPPGITL----DEYLLAQSEVGLERHMERNFPDPEERAKEMARYHERLVFEVKTIS 347

Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
           +M F GYFLIVADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLN
Sbjct: 348 QMGFPGYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLN 407

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
           P+R+SMPDFDIDFCQ  RD VI+YV++KYG + V+QI TFG++ A+AA+RDVGR L+  Y
Sbjct: 408 PERVSMPDFDIDFCQHGRDRVIQYVKDKYGKDAVSQIATFGTMAARAAIRDVGRVLEQGY 467

Query: 470 SQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
           + VD + KL+PN P   ++++ A   + +  E    +  V +LL ++Q+LEG+ R+   H
Sbjct: 468 NFVDGIAKLVPNKPGQYMTIEMAKKKEKQLAEREKNEDEVRQLLSLAQQLEGMTRNVGMH 527

Query: 529 AAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
           A G++I    L+   P+Y    +D  S   ++QF+   +E  GL+KFDFLGL TLT+L  
Sbjct: 528 AGGVLIAPGRLTDFCPLYTQESKDQDSSSVISQFDKDDVEAVGLVKFDFLGLTTLTILAA 587

Query: 585 SLDFLAQRGVKV--------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
                A+R +K         ++  IP DD + + +L    T+ +FQLES GM+  L   +
Sbjct: 588 -----AERWIKALHADRRDWNIGEIPLDDEKAFDVLKRANTVAVFQLESRGMQGMLREAK 642

Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
           PD  EDIIALV+LYRPGP+D I  +  RK+G++K+    P I+P+L+ET G+++YQEQVM
Sbjct: 643 PDRFEDIIALVALYRPGPMDLIPDFIERKHGRQKVEYPDPRIEPVLRETYGIMVYQEQVM 702

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           Q+AQ++ GYSL  AD+LRRAMGKK  EEM + ++ F  GA   GIS+  A  I++L+ +F
Sbjct: 703 QMAQMIGGYSLGGADMLRRAMGKKKPEEMAQHRKIFSDGAKAGGISEGKANEIYDLMERF 762

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
           A YGFNKSHAAAYA+++YQTAW+K +YP EF+AA+++L MD+ +K+K    D    NI++
Sbjct: 763 AGYGFNKSHAAAYALLAYQTAWLKAYYPAEFMAANLSLAMDDTDKVKILYDDCLVNNIRV 822

Query: 817 MPPSVNTPCVDF---KVGD-------NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSL 865
             P +NT   +F   +  D       + + Y L A++G G      I++A     PF  L
Sbjct: 823 FSPDINTGVYEFTPLRAPDAAPDSPISHVRYGLGAVRGTGEAAIESIVKARETGGPFKDL 882

Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYS-----------RMQLLQSLDNIQKYAQW 914
            DFC+RVD +++NRR +E+L+ AGA D                R  LL SL    + A+ 
Sbjct: 883 FDFCARVDRRQVNRRAIEALMRAGAFDDLYRDSVPAGGNLYDIRSTLLASLARAIEAAEQ 942

Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
            E +         A E+     ++  E    E    R + E+  LG   +GH  D Y+
Sbjct: 943 AEASIYQVSLFEVAGEENRHLPELVREPVWSEKK--RLQEEKTALGLCLTGHMFDAYR 998


>gi|299143802|ref|ZP_07036882.1| DNA polymerase III, alpha subunit [Peptoniphilus sp. oral taxon 386
            str. F0131]
 gi|298518287|gb|EFI42026.1| DNA polymerase III, alpha subunit [Peptoniphilus sp. oral taxon 386
            str. F0131]
          Length = 1149

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/1057 (36%), Positives = 610/1057 (57%), Gaps = 67/1057 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G+  ++ + +K       AIA+TD  N++  + F +    AGI+PI
Sbjct: 4    FVHLHVHSEYSLLDGSARISELANKAKELNMKAIALTDHGNMYGTIAFYKACKNAGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ I    N ++ ++  + F     ++LL     G++ L+++VS  ++ +      R
Sbjct: 64   IGCEVYI-ADGNYRVFDKNMSRF----HLILLAENYTGFKNLMKIVSEGFV-NGYYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
            I L  L++   EG+I  +   +G + R   +     AE+  L ++K+FG    ++ LQ H
Sbjct: 118  IDLDVLRKY-HEGIIATSACLAGEVQRKLNYGDFTGAEEAALKYEKIFGKGNFFLELQDH 176

Query: 190  -----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                 +  ++Y E+   +L    ++PL+ATN+  +L+ ED +AHDVL+ V   T V++++
Sbjct: 177  DIKEQKKVNKYLETLSAKL----DIPLIATNDVHYLNREDAKAHDVLLCVQTGTTVNEEN 232

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R +  T + YLK+  EM   FS   +AL NTV+IA RC+  ++ H   LP F      ++
Sbjct: 233  RMKFQTEEFYLKSIDEMYERFSGNEDALLNTVKIADRCNVNIEFHNLHLPHF------EV 286

Query: 304  QKEEENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 NE  LR     GL+ R            ++   R+++E + I  M +  YFLIV 
Sbjct: 287  PAGFTNESYLRFLVDRGLKERYE-------IINEEISNRVEYEFHTIIDMGYVDYFLIVW 339

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++A+ N I VGPGRGS AGS+ +YAL I DIDPL+F+LLFERFLNP+R+SMPD DID
Sbjct: 340  DFIRYARDNGIVVGPGRGSAAGSIISYALRIIDIDPLKFNLLFERFLNPERVSMPDIDID 399

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR+EVI YV  KYG E VAQI+TFG++ A+ A+RDVGRAL M Y +VD + K +P 
Sbjct: 400  FCYERREEVIEYVIEKYGIENVAQIVTFGTMGARGAIRDVGRALDMSYGRVDYIAKQVPE 459

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +    +   S  +E    D    RL++++ K+EGL RH STHAAG+VI    ++ 
Sbjct: 460  ELNMTIKDALVVSPSLNKEYN-EDEDAKRLIDMALKVEGLPRHTSTHAAGVVISKDAITN 518

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSL 600
             VP+ R+ +  +  TQFNM  +E+ GL+K DFLGL+TLT+++ +L+ + +  G+++D S 
Sbjct: 519  YVPLTRNDK--IIATQFNMNELEELGLLKMDFLGLRTLTVIRDALNLIKKNYGIEIDFSS 576

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +  +D    ++     TLGIFQ ESSGMR  L+ ++PD  ED++A  +L+RPGP++ I  
Sbjct: 577  MELNDSNVLNMFAKAETLGIFQFESSGMRAFLKDLKPDAFEDLVAANALFRPGPMNQIPK 636

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K+   KI  +H  ++ +LK T G I+YQEQVMQI Q + GYSL  AD++RRAM KK
Sbjct: 637  FIESKHNLNKISYVHEKLEDILKSTYGCIVYQEQVMQIVQKIGGYSLGRADLVRRAMSKK 696

Query: 721  IKEEMDKQKERFI-----------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
                M+++++ FI            GA +NG+ +  A  I++L+  FA Y FNKSH+ AY
Sbjct: 697  KMAVMEEERQNFIYGKIENGKKICCGAIENGVDEASANKIYDLMIDFAKYAFNKSHSVAY 756

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            +V++Y+TA++K +YP EF+AA ++  M  V ++  + ++ ++  I+++PP VN     F 
Sbjct: 757  SVVAYRTAYLKYYYPTEFMAAQISSYMGKVTQVTLYIEECKRLGIEVLPPDVNESFKHFT 816

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLV 886
            V  N I + L AIK +       I  A     F S  DF  RV   +S+ +N+R +E L+
Sbjct: 817  VEGNNIRFGLKAIKNMNENFISTIEIARKAGKFSSFNDFVKRVCEINSQAINKRAMEYLI 876

Query: 887  FAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
             +GALD  G +R Q L    +++DN+        KN      ++F  +  ++ DK  L K
Sbjct: 877  KSGALDSLGGNRAQYLAIYEKTIDNVIGNL----KNNVKGQFSLF--DTNSYEDKEVLPK 930

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG----YEESVATIRGNN--IR 996
                +++ + + E+ +LG Y SGHPLD Y   ++ M +      +E S   +R  +  ++
Sbjct: 931  LRDFSTNEKLDFEKEILGIYVSGHPLDAYIETIKNMNVTNTSIIFENSKNAMRKTDSYVK 990

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  ++ +K+   T+    + + +  +   + E   FP
Sbjct: 991  IVGLLKNKKTMITKNKKIMAFASLEDLYGQIELVIFP 1027


>gi|300088655|ref|YP_003759177.1| DNA polymerase III subunit alpha [Dehalogenimonas
            lykanthroporepellens BL-DC-9]
 gi|299528388|gb|ADJ26856.1| DNA polymerase III, alpha subunit [Dehalogenimonas
            lykanthroporepellens BL-DC-9]
          Length = 1211

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/1045 (38%), Positives = 603/1045 (57%), Gaps = 46/1045 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ +SLL+G   +  ++ +       A+AITD   ++ AL+F ++  A  I+PI
Sbjct: 2    FTHLHVHTEFSLLDGMCRIPALVHRAKELGMTALAITDHGTMYGALKFYRECLAQDIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +     L  T  GK        +VLL     GY+ L++LVS +   +      R
Sbjct: 62   IGCEVYVAPGSRLDKTPAGKNHR----HLVLLARNNTGYRNLLQLVS-LANTEGFYYKPR 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    L +   EGLI L+   SG + R    N    A +    ++  F    Y  +QRH 
Sbjct: 117  VDREILAKY-REGLIALSACPSGEVPRLILENRLSEARETAEWYRDNFDGDFYFEIQRHP 175

Query: 191  --GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +DR   + ++ L+   ++PLVAT ++ ++  ED + HD+L+ +    +V    R ++
Sbjct: 176  MPEFDRINNA-LIDLSRELDIPLVATGDTHYVRREDAQTHDLLLCIGTGAMVKDTSRMKM 234

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+ +EM  ++ D+PEALENT  IA +C   L+     LP+ I++       E 
Sbjct: 235  QADSFYLKSEAEMAELYRDIPEALENTNRIADKCDLKLEFGRVHLPQ-IDRPAGLTSDEY 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             ++L ++A+     RL   A      ++  R+RL +EL VI + +F+ YFL+V D I++ 
Sbjct: 294  LSQLCHEALP----RLYPDA------SEAVRERLTYELEVIEKTQFADYFLVVWDIIRFV 343

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+  I  G  RGS A S+    L IT++DPL ++L+FERFLN +R  MPD D+DF  DRR
Sbjct: 344  KERGIYFGV-RGSAAASIVLRCLDITEVDPLEYNLVFERFLNIERKEMPDIDMDFQDDRR 402

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV  KYG + VAQIITFG+L A+AA+RD GRAL +    VDR+ +LIP  P   +
Sbjct: 403  DEVIEYVSEKYGLDHVAQIITFGTLGARAAIRDTGRALGIDLPVVDRVARLIPFGPNMTL 462

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+ +++  REA   D +V ++++ ++++ GL RHASTHAAG+VI   PL+   P+ R
Sbjct: 463  D-KALEENTELREAVAKDGTVQKIIDAARQVSGLSRHASTHAAGVVISKEPLALHAPLQR 521

Query: 548  -------DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599
                   D RSDL +TQ+ M+ I   GL+K DFLGL  L++L ++ + + QR G  +D+ 
Sbjct: 522  LNRESASDARSDLVMTQYPMEDIGLIGLLKMDFLGLANLSILSRAQEIIGQRHGRPLDVH 581

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +T+ LL+   T+G+FQLE +GMR+ ++ ++P    DI A+V+LYRPGP++ I 
Sbjct: 582  RIPLDDPKTFALLSAGETMGVFQLEGAGMRRYIKELKPTHFTDIAAMVALYRPGPMEQIP 641

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +   K+G+E I   HP ++ +L+ET GVI+YQEQV+ IA+  SG+SL +AD+LR+AMGK
Sbjct: 642  RFIRSKHGEEAITYPHPALEEILQETYGVIVYQEQVLFIARTFSGFSLGQADILRKAMGK 701

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  E M KQK+ FI+GA KNG S+ +AV +F L+  FA Y FNK+HA +YA+I+YQTA++
Sbjct: 702  KNPEVMQKQKQNFIAGALKNGYSEDLAVEVFGLIEPFAGYAFNKAHAVSYALIAYQTAYL 761

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----- 834
            K +YPVE++AA +  + D  EK+     + R+  I ++PP +N   V+F V D+      
Sbjct: 762  KANYPVEYMAAFLATQRDVAEKVAAAAVECRRLGISLLPPDINNSDVNFSVEDSSPAGPA 821

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + LAA+K VG      ++ E  +  PF S+EDFC RVD   LNRRVLESL+ AGALDC
Sbjct: 822  IRFGLAAVKNVGEAAVTGLVAERRSGGPFTSVEDFCRRVDGACLNRRVLESLIKAGALDC 881

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-SDKITLEKFSVENSSVRF 952
             G  R  LLQ+   +  +A+   + R +    +F    G   +  + L+   +E+ S  F
Sbjct: 882  LG-DRATLLQNAGRLLDFAERERRIRDSGQGTLFDLFGGVAEAPPVALD---LESGSATF 937

Query: 953  EN----EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             +    E+ +LG Y S HP   +   +         E    + G    LA MVV+ +  +
Sbjct: 938  NDILAWEKDLLGLYVSAHPFSRFVGKVDHDTTALCGEITEEMEGQTTTLAGMVVAVRLAQ 997

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            TR G+    V   +     E   +P
Sbjct: 998  TRDGNTFANVELEDLNGRVEVIAWP 1022


>gi|331002659|ref|ZP_08326174.1| hypothetical protein HMPREF0491_01036 [Lachnospiraceae oral taxon 107
            str. F0167]
 gi|330407072|gb|EGG86576.1| hypothetical protein HMPREF0491_01036 [Lachnospiraceae oral taxon 107
            str. F0167]
          Length = 1152

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/1055 (37%), Positives = 602/1055 (57%), Gaps = 55/1055 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +  I+ +       ++AITD   ++  ++F ++A A GI+P
Sbjct: 2    SFTHLHVHTGYSLLDGSCKIKEIIRRAKELNMTSLAITDHGVMYGVIDFYKEAKANGIKP 61

Query: 70   IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I+GC++ +       K   QG   +     ++LL    +GY+ L ++VS+ +  +     
Sbjct: 62   ILGCEVYVSPASRFEKQAKQGDRYY----HLILLAKNNKGYENLTKIVSKGFT-EGFYYK 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             RI    L++   EG+I L+   +G I +         A K    +K LFG D  Y+ LQ
Sbjct: 117  PRIDFELLEKY-HEGIIALSACLAGEIPKLISRGRDDEARKVAKKYKDLFGEDSFYLELQ 175

Query: 188  RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++   +QV V++    ++PLVATN+  +++ ED  AHD+L+ +  S  VS  DR 
Sbjct: 176  NHGIPEQKFVNQVLVKIGKEFDIPLVATNDIHYINAEDAMAHDILLCIQTSKTVSDSDRM 235

Query: 247  RVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R     + LK+  EM ++F   PEA+ENT +IA  C   ++     LP +     D++  
Sbjct: 236  RYEGGQFFLKSEDEMKALFPYAPEAIENTAKIADMCEVEIKFGETKLPEY--PVPDNMSA 293

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHA-----QDYRQRLDFELNVIARMKFSGYFLIV 360
            +E  E            L Q    + Y A     +D + R+ +EL VI +M +  YFLIV
Sbjct: 294  KEYLE-----------SLCQSGFERNYSADYPNREDIKSRMYYELGVIEKMGYIDYFLIV 342

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D+I +A+   I VGPGRGS AGSV +Y L ITDIDP++++L+FERFLNP+R+SMPD D+
Sbjct: 343  WDYINYARGKGISVGPGRGSAAGSVVSYCLGITDIDPIKYNLIFERFLNPERVSMPDIDV 402

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR EVI YV NKYG ERV QIITFG+LQA+  +RDVGRA+++PY++ D + K+IP
Sbjct: 403  DFADERRSEVIDYVVNKYGSERVCQIITFGTLQARGVIRDVGRAMEIPYARCDSIAKMIP 462

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             D    + L A+  +   +E   +D  V  L++ S KLEGL RHAS HAAG+VI  + + 
Sbjct: 463  RDKDITLEL-ALERNKELKELYDSDEVVHELIDYSLKLEGLPRHASIHAAGVVISKKAVD 521

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599
            + VP+   V  D   TQF M  +E+ GL+K DFLGL+TLT+LQ +L  + +   + +DL+
Sbjct: 522  EYVPLALGV-DDAITTQFTMTTLEELGLLKMDFLGLRTLTVLQNTLAMVKKNYNIDLDLN 580

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I +DD + Y  ++T  T  +FQLES+GM+  ++ ++P+ +EDIIA +SLYRPGP+D I 
Sbjct: 581  NIDYDDKKVYEFISTGKTDAVFQLESAGMQSFMKRLKPENLEDIIAGISLYRPGPMDFIP 640

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y   KN K+K+    P +  +L+ T G I+YQEQVMQI + L+GY++  +D +RRAM K
Sbjct: 641  KYIAGKNSKDKVSYDSPQLVSILEPTYGCIVYQEQVMQIVRDLAGYTMGGSDEVRRAMSK 700

Query: 720  KIKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            K    M+ +++ F        I G   NGI + +A  IF+ +  FA Y FNKSHAA YAV
Sbjct: 701  KKAHIMEMERKNFIYGNEEKGIKGCINNGIEEQVANRIFDEMIDFASYAFNKSHAACYAV 760

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISYQTA++K +YP EF+AAS+T   DN  K+ ++        I+I+PP VN     F V 
Sbjct: 761  ISYQTAYLKYYYPKEFMAASLTSVSDNPAKLAEYIGSLMDMGIKILPPDVNLGEGAFSVD 820

Query: 832  DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             + I + L+ IKGVG   A  ++ E + +  + +LE+F +R+  K LN+R +ES + AGA
Sbjct: 821  KDGIRFGLSTIKGVGKAVADSLVRERTMNGKYLTLENFINRLPQKDLNKRSIESFIKAGA 880

Query: 891  LDCFGYSRMQLLQS----LDNIQKYAQWVEKNRTNKHENIFAHEKGTF-SDKITLEKFSV 945
            LD    +R + + +    +D   K ++     + +  + +   E+ +F SD I +E++  
Sbjct: 881  LDGMEGNRHEKILNAELFIDKKSKESKASIPGQISFFDVVSEEERDSFVSDMIHIEEYPK 940

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM----GIKGYEESVATI---RGNNIRLA 998
            E      + E  VLG Y SGHPL+ Y  +L K      I  Y +    I    G  + + 
Sbjct: 941  EE---LLKYEMEVLGMYVSGHPLEEYISLLEKHCDARSIDFYPDESGNILLESGRKLAVG 997

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++V   ++ T+KG  +   T  +     E   FP
Sbjct: 998  GLLVEVNKRFTKKGDMMAICTLEDLYGRIELVIFP 1032


>gi|163942337|ref|YP_001647221.1| DNA polymerase III DnaE [Bacillus weihenstephanensis KBAB4]
 gi|163864534|gb|ABY45593.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis KBAB4]
          Length = 1110

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/1033 (36%), Positives = 606/1033 (58%), Gaps = 59/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVIRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63   IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+   T++ +F +  Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVAHTYQNMFSN-FYISLQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFINKVNVPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRMK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +YLK+  EM ++FS   EA++NT+ IA RC   +  H   LP+F       +   E 
Sbjct: 226  TDQYYLKSSDEMGALFSHAEEAVQNTITIAERCQVEIPFHVNQLPKF------PVPSNET 279

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            N+  LR     GL+ R        G   + +  RLD ELNVI+RM FS YFLIV DF+++
Sbjct: 280  NDTYLRRVCEEGLQKRY-------GTPKEAHIGRLDHELNVISRMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYELLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +    +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLLPRDIDIFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451  ITLRDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ ++ G ++D+  +P  
Sbjct: 511  -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVEKTGKQIDIRNLPLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK +I  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGKRQIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++++ F+ G  +NG  +T +  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y 
Sbjct: 690  LDQERKHFVQGCLENGYDETSSEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ 
Sbjct: 750  LEFMTALLSSAIGNEDKIVQYVRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E   +K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S
Sbjct: 810  IGMATVTALLEEREEKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDGFGVSRTTLWRS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960
            L    +YA                       D +   K+ V+   + F      E+  LG
Sbjct: 870  LKGALEYANLARDF--------------DLGDAVPKSKY-VQGEELSFIEQLNKEKEALG 914

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF
Sbjct: 915  FYLSSYPTAQYAELGKELEIPSLAQAMRHKKKVQ-RAIVYITSVKVIRTKKLQKMAFITF 973

Query: 1021 SEPAKEYEANFFP 1033
             +   E EA  FP
Sbjct: 974  CDQNDEMEAVIFP 986


>gi|320537716|ref|ZP_08037642.1| putative DNA polymerase III DnaE [Treponema phagedenis F0421]
 gi|320145453|gb|EFW37143.1| putative DNA polymerase III DnaE [Treponema phagedenis F0421]
          Length = 1139

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/1055 (36%), Positives = 586/1055 (55%), Gaps = 63/1055 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+GA S+  ++       QPA+A+TD  N+F  L F ++     I+P+
Sbjct: 3    FVHLHVHSDYSLLDGASSIQKLVSTAKKLGQPALALTDHGNMFGVLRFQEECKKQEIKPL 62

Query: 71   IGCQLDIDMQDNLKMTNQ--GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IGC+L +  +       Q  G+  +     ++L+     GY+ L+ L S+ Y   +G   
Sbjct: 63   IGCELYVAAKSRFDRNKQINGRNYY----HLILIAKNEIGYRNLMVLSSKAYT--EGMYY 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                   L +  +EGLI L+   +G +         + AE  +  +  +FGD  ++ +Q 
Sbjct: 117  KPRIDDELLQAHSEGLICLSACLAGQLPYLLLNGRKEEAEAHVRKYLDIFGDNYFIEVQN 176

Query: 189  HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ + + + +++A    +P+V TN+  +  ++D  A D+L+ +    V +  +R +
Sbjct: 177  HGLAEQKKVTPLLIEMARKLGIPMVLTNDVHYAEQKDSVAQDILLCIGMKKVRTDTNRMK 236

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQK 305
               D  YLK+  EM  +F + PE + NT+ IA  C+  +    P+LP + I +E      
Sbjct: 237  FETDQFYLKSAEEMAKLFPEYPEMMSNTLRIADMCNVEIPQPGPLLPVYKIPEEF----A 292

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             ++  +R+    GL+ R             + ++R ++EL++I +M F GYFLIV DFI 
Sbjct: 293  SKDLYIRHLVAEGLKTRYE-------VITDEIKKRAEYELDIIIKMDFVGYFLIVWDFIN 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK ++IPVGPGRGSGAGS+ AYA+ ITDIDPLR+ LLFERFLNP+R+SMPDFD+DFC +
Sbjct: 346  WAKNHDIPVGPGRGSGAGSIVAYAMRITDIDPLRYKLLFERFLNPERISMPDFDVDFCFE 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV+ KYG E V QIITFG+L+ KAA++DVGR L +P + V+ + KL+P DP  
Sbjct: 406  RRQEVIEYVRQKYGDESVGQIITFGTLKPKAAIKDVGRVLNIPLADVNMITKLMPEDPKL 465

Query: 486  PVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                   I +  + +E     P    L +I++ LE   R+ S HAAGIVIG   L+  VP
Sbjct: 466  TFEKALTIPELVQIKET----PEYTELFQIAEALEDSNRNTSLHAAGIVIGKTKLTDYVP 521

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---VKVDLSLI 601
            +Y+D ++    TQF M  IE+ GL+K DFLGLKTLTL++ + D + +RG       +  I
Sbjct: 522  LYKDSKTGKIATQFTMDLIEQCGLVKMDFLGLKTLTLIKHTEDLIRRRGGALANFSIQNI 581

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
              DD  TY +L    +  +FQ ES GM+  L+  +PD IED+IAL +LYRPGP+  I  +
Sbjct: 582  CDDDERTYKMLGEGMSAAVFQFESKGMQGILKRAKPDKIEDLIALNALYRPGPMAFIDQF 641

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K    KI    P +  +L+ET GVI+YQEQVMQ+AQ + G SL EAD+LRRAMGKK 
Sbjct: 642  IESKFDNSKIKYPDPCLQDILEETYGVIVYQEQVMQVAQKIGGLSLGEADILRRAMGKKK 701

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            KE M + K +F   A   G  K  A  IF++L  FA YGFNKSHAAAY+V++YQTA++K 
Sbjct: 702  KEVMAEWKVKFAERAVTQGFDKKHAEEIFDILVPFAGYGFNKSHAAAYSVLAYQTAYLKA 761

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            ++P EF+AA++T E+ +V+K+  + ++A +  + I+PPS+N     F V    I +    
Sbjct: 762  NFPAEFMAANLTNEITSVDKLPVYIEEAEKMGLTIVPPSINKSEPYFSVDKGEIIFGFLG 821

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IKGVG   A  I  E   +  + S  DF  RVD   + +  +E L+  G  D F  +R  
Sbjct: 822  IKGVGEQAAIDIYNERKTNGMYKSFIDFLDRVDLHTVKKSTVEVLIKTGCFDEFDINRAT 881

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-GTFSDKITLEKFSVENSSVRFENEQRVL 959
            L+   +    YA   ++ + +   ++F +     FSD     +        +   E+ ++
Sbjct: 882  LIGQYEAAMGYATQKKEGQESGQVSLFENTGIKEFSD-FVFARVEDLPQKEKLRMEKDLV 940

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR---------LAAMVVSKQQKKTR 1010
            GFY SGHPLD Y+ I+         E+ AT+   ++          +  M+ + +   T+
Sbjct: 941  GFYISGHPLDEYRKII---------ETTATLDLGHLERATPEKKYLIVGMLNAIKPYTTK 991

Query: 1011 KGSRIGW------------VTFSEPAKEYEANFFP 1033
            KG  + +            V FS+  +E  A F P
Sbjct: 992  KGQSMAFGSFEDLHGVIDLVFFSKIWEEQRARFLP 1026


>gi|326576416|gb|EGE26325.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis O35E]
          Length = 1240

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/1030 (38%), Positives = 581/1030 (56%), Gaps = 87/1030 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    AGI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY----LLDQG 125
            IIG ++ +    +       K       S++L   +  GYQ L+ L+S  Y    + + G
Sbjct: 62   IIGAEVVVGEHSD-------KDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 126  K---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT  S   I +    ++   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILTHRSE--IAQPLLSHNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYD-RYRESQVVQLA-------------YTHELPLVATNNSLFLSEEDYEAH 228
            Y+ ++R +  D ++ ES ++Q A             + H  P   TN+       D++AH
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASP-TETNDKNNTVSTDFDAH 231

Query: 229  DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            +  + +A+S  ++   RPR  T   Y K++ +M  +F+DLP+A++NT  +A RC+  + +
Sbjct: 232  EARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNVTITL 291

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVA--GLEVRLA------QGAIAKGYHAQDYRQ 339
               +LP F       I K E  E   K V+  GL  RL       Q         + Y +
Sbjct: 292  GINVLPDF------PIPKGETIETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDE 345

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RLD+EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL 
Sbjct: 346  RLDYELDIILKMGFPGYFLIVTDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLS 405

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            + LLFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +R
Sbjct: 406  YDLLFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVR 465

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLE 513
            DV R    P+   DR+ K+IP  P   + L+   D     +  L +P          + E
Sbjct: 466  DVTRVQGKPFGLGDRISKMIPKTPG--IKLEDAFDQEPQLKELLTNPDAPDHELALEIWE 523

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
            +++KLEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDF
Sbjct: 524  MAKKLEGLTRNVGKHAGGVLIAPNRISDFSAIYCDGEGH-PVSQYDKDDVEAVGLVKFDF 582

Query: 574  LGLKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSG 627
            LGL+ LT+LQ ++D +     AQ    +DL  +P DD + Y  +L    T  +FQLESSG
Sbjct: 583  LGLRNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSG 642

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDP 680
            M++ L  ++P  IED+IA+ +LYRPGP+++ +V  + +RK+G +++   HP     L+ P
Sbjct: 643  MKKYLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQP 702

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
             L+ T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  
Sbjct: 703  PLESTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVEGAIEQN 762

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            I   +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +
Sbjct: 763  IDGGLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTD 822

Query: 801  KIKKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASA 858
            ++     D R  F + I+PPSVN     F V D + I Y L A+KGVG      I+ A  
Sbjct: 823  QVVFLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARK 882

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL----------------DCFGYSRMQLL 902
            D  F  L DFC+RVD KK+ +R LE+L+ AG                  DC    R  L 
Sbjct: 883  DGAFKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLW 942

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            + L      A    +N+     ++F     +      LE    +    R   EQ  LG Y
Sbjct: 943  RQLPEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDVYWQPQD-RLRYEQATLGLY 1001

Query: 963  FSGHPLDVYK 972
             +GHPLD Y+
Sbjct: 1002 LTGHPLDEYR 1011


>gi|282891879|ref|ZP_06300358.1| hypothetical protein pah_c200o024 [Parachlamydia acanthamoebae str.
            Hall's coccus]
 gi|281498139|gb|EFB40479.1| hypothetical protein pah_c200o024 [Parachlamydia acanthamoebae str.
            Hall's coccus]
          Length = 1241

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/1083 (36%), Positives = 610/1083 (56%), Gaps = 90/1083 (8%)

Query: 23   LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
            ++ + S+N I +K A  + PA+A+TD  N++ A+EF +    A ++PI+GC++ +  +  
Sbjct: 1    MDASASINLIAEKAAEFKMPAVALTDHGNMYGAVEFFKACQGAQVKPILGCEVYVAPESR 60

Query: 83   LKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            L     G ++ F     + LL  + EGY+ L +L S +  L+      RI    L++   
Sbjct: 61   LDRKKIGNRSDF----HLTLLAKSMEGYKNLCKL-SSIGFLEGFYYHPRIDHEVLEKY-K 114

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH------------ 189
            EGLI L+G  S  +       + +   K L  +K LFG+  Y+ +QRH            
Sbjct: 115  EGLICLSGCLSSRLSSEILQGTPESIRKHLAWYKDLFGEDYYLEVQRHTMSEENIQRDGL 174

Query: 190  -------RGYDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-- 234
                   + Y  Y E Q      +V+L+    +PLVATN+S ++  ED+  H++L+ V  
Sbjct: 175  YQETWLLQNYQEYIEKQTKVTQALVELSQEFGIPLVATNDSHYIEREDWREHEILLNVQS 234

Query: 235  AHSTVVSQKD------------RPRVTPDH--YLKNRSEMVSIFSDLPEALENTVEIARR 280
                 + +KD            + RV   H  Y K+ ++M  +F DLP+AL +T+EIA +
Sbjct: 235  GEPCEILEKDAMGNPKFRQLNPKRRVYSSHECYFKSPTQMQEVFKDLPQALASTLEIAEK 294

Query: 281  CSFILQV---HAPI-LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA-- 334
            C   L     H P+ +P F+E +     KEE    R +AV      L +  I K Y A  
Sbjct: 295  CHVQLDFKTKHYPVYVPPFLEGQS--YTKEE----RAQAVEKYLWDLCEEGIKKRYDADK 348

Query: 335  --------------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                          Q  R+RL++E+ +I   + S Y LIV DFI WAK+N IPVGPGRGS
Sbjct: 349  LAKIQELFPDKDPTQIVRERLEYEMGIIVPKEMSDYLLIVWDFINWAKRNQIPVGPGRGS 408

Query: 381  GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
            GAGS+  Y + +TDI+PLRF L FERF+NP+R+S PD D+D C DRR +VI+Y   KYG 
Sbjct: 409  GAGSIVLYLIGVTDIEPLRFHLFFERFINPERLSYPDIDVDICMDRRGDVIQYTLEKYGK 468

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFR 499
            + VAQIITFG+++A+ A++DVGR L +P S+V+ + KL+P D    ++L+ A+  D   R
Sbjct: 469  DNVAQIITFGTMKARMAIKDVGRVLSVPLSKVNEIAKLVPEDLN--ITLEKALEKDPDLR 526

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
                 D    R+++I +KLEG  R    HAAGI+I   PLS ++P+     SD+P TQ++
Sbjct: 527  AMYETDEDAKRIIDIGKKLEGSIRSTGIHAAGIIISGAPLSSIIPICNAKDSDMPATQYS 586

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
            MK +E  G++K DFLGLKTLT +Q+ +  +    G  +D   +P DD  T+ LL    TL
Sbjct: 587  MKPVEMVGMLKVDFLGLKTLTAIQQCVASVNVSTGKLIDWVNLPLDDVRTFDLLNQGKTL 646

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G+FQLES+GM+     +  D  E+IIA+ +LYRPGP+D I  + NRK+G+E I + HP +
Sbjct: 647  GVFQLESAGMQDLARQLHLDKFEEIIAVGALYRPGPMDMIPSFINRKHGREPIENDHPWM 706

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
              +L ET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK   +M +Q+E+F  GA +
Sbjct: 707  KDILAETYGIMVYQEQVMQIASKLARYSLGEGDVLRRAMGKKDMAQMAQQREKFRLGALE 766

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            N I +T ++ +F+ + KFA YGFNKSHAAAY  +SY TA++K ++P E++A+ MT + D+
Sbjct: 767  NEIEETTSMLVFDKMEKFAAYGFNKSHAAAYGYLSYVTAYLKANHPREWMASLMTCDSDD 826

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EAS 857
            + K+ KF ++A+   I I+PP +N     F      I +++  IKGVG      I+ E +
Sbjct: 827  LSKVAKFIREAQTMGIAILPPDINEAGSTFIATPQGIRFAMKGIKGVGEGVVEAIVQERN 886

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
               PF     F  R+D KK+ ++ +E+LV AG+ D  G+SR  L QS+D + + A   ++
Sbjct: 887  RSGPFTHFYQFFKRIDLKKVGKKSIENLVDAGSFDFTGWSRDALRQSIDPMYETALKEKR 946

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPIL 975
               +     F     T   K +     +  +S +     E+ +LGF+ +GHPLD ++  +
Sbjct: 947  EEQSGVLTFFDLMGATSEAKFSFAPNVLNPTSKQNILLKEKELLGFFLTGHPLDSFQEYM 1006

Query: 976  RKMGIKGYEESVATIRGNN--IRLAAMVVSKQQK---KTRKGSRIGWVTFSEPAKEYEAN 1030
            +++    +  S   + GN+   R A ++ S Q +   KT+K  +   +  S+  + YE  
Sbjct: 1007 QRLSCVNF--SAIDMLGNDAVFRSAVIIESVQLRLSAKTQK--KFAILRISDGIESYELP 1062

Query: 1031 FFP 1033
             +P
Sbjct: 1063 IWP 1065


>gi|33865566|ref|NP_897125.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 8102]
 gi|33632735|emb|CAE07547.1| DNA polymerase III, alpha subunit [Synechococcus sp. WH 8102]
          Length = 1172

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1058 (36%), Positives = 604/1058 (57%), Gaps = 51/1058 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++      PAIA+TD   ++ A+E  +    + ++P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPAMVERAKELGMPAIALTDHGVMYGAIELLKLCKGSDLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IIG ++ +       +      P P       +V+L   A GY+ L++L S  +L     
Sbjct: 62   IIGNEMYV-------INGSIDDPQPKKEKRYHLVVLAKNAVGYRNLVKLTSISHLRGMRG 114

Query: 127  QSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            + +  R C+   L +  +EGLI+ T    G + +A       VA      ++++FG+  Y
Sbjct: 115  RGIFSRACIDKHLLKTYSEGLIISTACLGGELPQAILRGRPDVARNVARWYQEVFGEDFY 174

Query: 184  VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H    DR    ++V++A    + LVATN++ +LS++D EAHD L+ V    ++S 
Sbjct: 175  LEIQDHGSPEDRIVNVELVRIAQELGIQLVATNDAHYLSKQDVEAHDALLCVLTGKLISD 234

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296
            + R R T   Y+K   EM  +F D      + +A+ NTV +A +      +    +PRF 
Sbjct: 235  EKRLRYTGTEYIKTEEEMNRLFVDHLEPDVVRQAIANTVAVAEKVEDYDILGHYQMPRFP 294

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E           LR     GL  RL   + A     ++Y +R+  EL ++ +M F  Y
Sbjct: 295  IPE----GHTAVTYLREVTEQGLRERLELSSDAS--IPENYAERMAHELKIMEQMGFPTY 348

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL+V D+I++A++  IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMP
Sbjct: 349  FLVVWDYIRFAREQKIPVGPGRGSAAGSLVAYALGITNIDPVTNGLLFERFLNPERKSMP 408

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL 
Sbjct: 409  DIDTDFCIERRSEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLA 468

Query: 477  KLIPNDPAHPVSLQA-IADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            KLIP     P  L+A I ++S    FRE   +DP V R ++++ ++EG  +    HAAG+
Sbjct: 469  KLIPVVRGKPAKLKAMIGEESPTPEFREKYESDPVVKRWVDMAMRIEGTNKTFGVHAAGV 528

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQ 591
            VI   PL +LVP+ R+    + +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +   
Sbjct: 529  VIAADPLDELVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVS 587

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             G ++D   +P +D +T+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYR
Sbjct: 588  SGTRLDPDKLPPEDADTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYR 647

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+D  ++  + NRK+G+E I   H +++P+L ET G+++YQEQ+M+IAQ L+GYSL +
Sbjct: 648  PGPLDAGLIPKFINRKHGREAIDFAHTILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQ 707

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK   EM K +  F+ GA++ G+ + ++  +F+ +  FA+Y FNKSH+ AY
Sbjct: 708  ADLLRRAMGKKKVAEMQKHRGIFVKGAAERGVDEAVSDELFDQMVLFAEYCFNKSHSTAY 767

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
              ++YQTA++K HYPV ++AA +T+     +K++++  +     I++MPP VN    DF 
Sbjct: 768  GAVTYQTAYLKAHYPVAYMAALLTVNAGAADKVQRYIANCNAMGIEVMPPDVNASRTDFT 827

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
               +RI + L+A++ +G    R ++ +  +D PF SL D C R+ S  LNRR LESL+  
Sbjct: 828  PNGDRILFGLSAVRNLGDGAIRQLIRSRDSDGPFRSLPDLCDRIPSSVLNRRGLESLIHC 887

Query: 889  GALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITL 940
            GALD      +R QL+  LD +  +A    K+R +   N+F        E G     +  
Sbjct: 888  GALDSMDPAANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAAPNDEDGASDLSLAP 947

Query: 941  EKFSVEN--SSVRFENEQRVLGFYFSGHPLDVYKP---ILRKMGIKGYEESVATIRGNNI 995
            +   V +   + + + E+ +LGFY S HPL    P   +L  +G+   EE     +   +
Sbjct: 948  KAAPVADYGPAEKLKLEKELLGFYLSDHPLKQLTPSARLLAPIGLGALEEQPDKAK---V 1004

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                M+   +Q  TRKG  +  +   + +   EA  FP
Sbjct: 1005 SAVTMITELRQVTTRKGDGMAILQLEDLSGSCEAVVFP 1042


>gi|291166424|gb|EFE28470.1| DNA polymerase III, alpha subunit [Filifactor alocis ATCC 35896]
          Length = 1151

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/1054 (35%), Positives = 613/1054 (58%), Gaps = 56/1054 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+G  ++ + + K   D   A+AITD   +F  +EF + A   GI+PI
Sbjct: 5    FTHLHLHTPYSLLDGFATIEDTIKKAKEDGMDAVAITDHGVMFGVVEFYKVALNYGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +      N  K  +     ++LL     GYQ LI+LVS +  ++      R
Sbjct: 65   IGCEVYVSYRTRFDKENIDKRSY----HLILLAENNTGYQNLIKLVS-LGFVEGYYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            + +  L+   +EG+I L+   +G + ++   N+ + A+K    ++++FG D  ++ LQ H
Sbjct: 120  VDIDLLKSY-SEGIIALSACLAGEVQQSLLNNNYEEAKKVACRYREIFGEDNFFLELQNH 178

Query: 190  RGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ + + +++ L+    +PLVATN+  +++  D + HD+L+ +     +  KDR   
Sbjct: 179  GIEEQLKVNHLLRRLSLDTGIPLVATNDVHYVNRSDSKNHDILLCIQTGKTLDDKDRMEF 238

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  Y K R EM  +FS   +AL NT +I++RC+     +   LP F +      +++ 
Sbjct: 239  KTDQFYFKTREEMYQLFSKDEDALLNTWKISQRCNVSFDFNVIHLPEF-QVPHHYTKEQI 297

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             +EL  +   GL+ R               R+R ++E  VI +M +  YFLIV DFI+++
Sbjct: 298  FDELCER---GLQERYFDIT-------PPIRERFEYEKKVIKKMGYVEYFLIVQDFIRFS 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            KKNNI VGPGRGS AGS+ +Y L ITD+DP+++ LLFERFLNP+R+SMPD DIDFC ++R
Sbjct: 348  KKNNIMVGPGRGSAAGSIISYCLQITDVDPIKYHLLFERFLNPERISMPDIDIDFCYEKR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            ++VI YV+ KYG + VAQIITFG+  AKAA+RDVGR L + Y++VD++ K IP++    +
Sbjct: 408  EQVIDYVKEKYGEDHVAQIITFGTFGAKAAIRDVGRVLGISYAEVDKIAKQIPDNLGMTI 467

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +S  ++  ++D +V  +++ ++++EGL RHASTHAAG+VI    +   VP+Y 
Sbjct: 468  E-KALEMNSELKKMYVSDNNVRNIIDFAKRIEGLPRHASTHAAGVVISKNTMDYYVPLY- 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
             +  DL  TQF M  +E+ GL+K DFLGL+TLT++QK+L+ + +    K+D S +  ++ 
Sbjct: 526  -MHKDLIATQFPMTTLEELGLLKMDFLGLRTLTVIQKTLEAIEKIYNKKIDFSKMDTNNT 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              + LL+   TLG+FQLES GMR  L+ ++PD  EDI+A +SLYRPGP+++I +Y   KN
Sbjct: 585  RVFQLLSNGNTLGVFQLESPGMRSFLKELRPDTFEDIVAGISLYRPGPMESIPIYIENKN 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                I  +H  + P+L+ T+G+++YQEQVMQI + L+GYS + AD++R+AM KK  + M+
Sbjct: 645  NSNHISYLHESLKPILEVTKGIMVYQEQVMQIVRSLAGYSYARADLVRKAMSKKKMDVME 704

Query: 727  KQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +++E F            ISG  +NGI + IA  I++ +  FA Y FNKSHA  YA+++Y
Sbjct: 705  EEREYFVYGKISGSGDIEISGCVRNGIPEKIANQIYDEMIDFAKYAFNKSHAVCYAMLAY 764

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +TA++K  YP  F+A+ MT   D  +K+ ++ ++    NI I+ P +N     F V  + 
Sbjct: 765  ETAYLKAFYPSCFMASLMTSVSDRSDKVIEYIRECADLNICILKPDINRSNSYFSVEGDH 824

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+LA+IK +G      I+ E + +  F S EDF  R+  K +++R +ESL+ AG  D 
Sbjct: 825  IRYALASIKNIGIKAIDDIVQERNKNGEFQSFEDFIKRIPQKNISKRFVESLIKAGCFDS 884

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT----LEKFSVENSS 949
               +R  L+   + +       +K+       +F++++   +  +     +  FS++   
Sbjct: 885  IHPNRASLVAGYEKVMDIVHSQKKHSIQGQVTLFSNQEALPNQNLNFFPHISDFSIKE-- 942

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRK----------MGIKGYEESVATIRGNNIRLAA 999
             +   E+  +G Y SGHPLD Y+ +++             I  +++S   I    I +  
Sbjct: 943  -KLYMEKETIGLYLSGHPLDEYQDVIKDDTNIVSIDSIKNIPSHQKS--EIEKKKIVIVG 999

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++SK  K T++   + ++T  + +   E   FP
Sbjct: 1000 TILSKMIKYTKQNKIMCFLTIEDFSGSLEVLIFP 1033


>gi|291086960|ref|ZP_06345005.2| DNA polymerase III alpha subunit [Clostridium sp. M62/1]
 gi|291076483|gb|EFE13847.1| DNA polymerase III alpha subunit [Clostridium sp. M62/1]
          Length = 1197

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1052 (37%), Positives = 597/1052 (56%), Gaps = 51/1052 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+ +  +  ++ +       ++AITD   ++  ++F + A  AGI+P
Sbjct: 40   AFTHLHVHTEYSLLDASSKIKELVARAKELGMDSLAITDHGVMYGVIDFYRAAREAGIKP 99

Query: 70   IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++GC++ +       +    G+  +     ++LL    EGYQ L+++VS  ++ +     
Sbjct: 100  VLGCEIYVAPGSRFDREIGAGEDKYY---HLILLAENNEGYQNLMKIVSTGFV-EGFYYK 155

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187
             R+    L+   + GLI L+   +G + R       +  +K  L ++ +FG+   ++ LQ
Sbjct: 156  PRVDFETLERY-SRGLICLSACLAGEVQRNLARGMYEEGKKAALRYQSIFGEGNFFLELQ 214

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H     +     +++++    +PLVATN+  ++  ED ++HD+L+ +     V+ ++R 
Sbjct: 215  DHGIPLQKTVNQGLLRMSQDTGIPLVATNDCHYIYREDEKSHDILLCIQTGKKVADENRM 274

Query: 247  RVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R     +YLK+  EM SIF    EALENT +IA RC+  ++     +P+F +        
Sbjct: 275  RYEGGQYYLKSEEEMKSIFPYALEALENTHKIAERCNVEIEFGVTKIPQF-DVPGGKTSW 333

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADF 363
            E  NEL  +   G   R         Y   D   R+RLD+EL+VI  M +  YFLIV DF
Sbjct: 334  EYLNELCEE---GFRTR---------YPDDDGTLRKRLDYELSVIQSMGYVDYFLIVWDF 381

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I +A+ ++I VGPGRGS AGS+ +Y L ITDIDP+R++LLFERFLNP+R+SMPD DIDFC
Sbjct: 382  IHFARSHDIMVGPGRGSAAGSIVSYCLRITDIDPIRYNLLFERFLNPERVSMPDIDIDFC 441

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR EVI YV  KYG +RV QI+TFG+L AK  +RDVGR L MPY++ D + K+IP D 
Sbjct: 442  FERRQEVIDYVVQKYGRDRVVQIVTFGTLAAKGVVRDVGRVLDMPYAKCDAVAKMIPGDL 501

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++L         REA  +DP +  L+++S++LEGL RH S HAAG+VI    + + V
Sbjct: 502  G--MTLDKALKTPELREAYDSDPEIKYLIDMSRRLEGLPRHTSMHAAGVVISRNKVDEYV 559

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+ R     +  TQF M  +E+ GL+K DFLGL+TLT++Q ++    +   +K+DL+ I 
Sbjct: 560  PLSRAADGSI-TTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVRQAEKTHHIKIDLNKID 618

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            ++D      L T    G+FQLESSGM+  ++ ++P+ +EDIIA +SLYRPGP+D I  Y 
Sbjct: 619  YNDKAVLESLGTGKNDGVFQLESSGMKSFMKELKPENLEDIIAGISLYRPGPMDFIPKYL 678

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              KN +  I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D++RRAM KK  
Sbjct: 679  KGKNDRASITYDCPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKA 738

Query: 723  EEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              M+K+++ F        + G   NGI +  A  I++ +  FA Y FNKSHAAAYAV+SY
Sbjct: 739  AVMEKERQNFVYGNPEEGVKGCIANGIDEKTANIIYDEMIDFAKYAFNKSHAAAYAVVSY 798

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEF+AA MT   DNV K+ ++    RQ  ++IMPP +N     F V +  
Sbjct: 799  QTAYLKYYYPVEFMAALMTSVKDNVSKVSEYILTCRQMGMKIMPPDINEGEGGFSVSNGA 858

Query: 835  IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L+A+K +G T    I++   ++ PF SL DF  R+ +K++N+R +ES + +GALD 
Sbjct: 859  IRYGLSALKSIGQTVVDEIVKERTERGPFVSLADFIDRMSNKEVNKRTIESFIKSGALDS 918

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSVENSS 949
               +R Q       + +     +KN      ++F      EK  F  +IT          
Sbjct: 919  LPGTRKQKFLVSAALLEQKNKEKKNSMEGQMSLFDFVEEEEKEQF--QITFPDVGEYTKE 976

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMG-------IKGYEESVATIR-GNNIRLAAMV 1001
                 E+ +LG Y SGHPL+ Y  + +K         I   EE  A +R G+ + +  M+
Sbjct: 977  ELLAFEKEMLGVYVSGHPLEEYMDLWKKNVTAVSSDFIVDEEEGHAKVRDGSYVTIGGMI 1036

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              K  K TR+   + ++T  + A   E   FP
Sbjct: 1037 TEKTVKTTRQNKMMAFITVEDLAGTVEVLIFP 1068


>gi|326559880|gb|EGE10280.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis 7169]
          Length = 1240

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1028 (38%), Positives = 580/1028 (56%), Gaps = 83/1028 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    AGI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY----LLDQG 125
            IIG ++ +    +       K       S++L   +  GYQ L+ L+S  Y    + + G
Sbjct: 62   IIGAEVVVGEHSD-------KDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 126  K---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT  S   I +    ++   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILTHRSE--IAQPLLSHNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYD-RYRESQVVQLA-------------YTHELPLVATNNSLFLSEEDYEAH 228
            Y+ ++R +  D ++ ES ++Q A             + H  P   TN+       D++AH
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASP-TETNDKNNTVSTDFDAH 231

Query: 229  DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            +  + +A+S  ++   RPR  T   Y K++ +M  +F+DLP+A++NT  +A RC+  + +
Sbjct: 232  EARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNVTITL 291

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRL 341
               +LP F   + + I    E   +  +  GL  RL       Q         + Y +RL
Sbjct: 292  GINVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERL 347

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            D+EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + 
Sbjct: 348  DYELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYD 407

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV
Sbjct: 408  LLFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDV 467

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEIS 515
             R    P+   DR+ K+IP  P   + L+   D     +  L +P          + E++
Sbjct: 468  TRVQGKPFGLGDRISKMIPKTPG--IKLEDAFDQEPQLKELLTNPDAPDHELALEIWEMA 525

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            +KLEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLG
Sbjct: 526  KKLEGLTRNVGKHAGGVLIAPNRISDFSAIYCDGEGH-PVSQYDKDDVEAVGLVKFDFLG 584

Query: 576  LKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMR 629
            L+ LT+LQ ++D +     AQ    +DL  +P DD + Y  +L    T  +FQLESSGM+
Sbjct: 585  LRNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMK 644

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPML 682
            + L  ++P  IED+IA+ +LYRPGP+++ +V  + +RK+G +++   HP     L+ P L
Sbjct: 645  KYLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPL 704

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            + T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I 
Sbjct: 705  ESTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNID 764

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++
Sbjct: 765  GGLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQV 824

Query: 803  KKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK 860
                 D R  F + I+PPSVN     F V D + I Y L A+KGVG      I+ A  D 
Sbjct: 825  VFLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDG 884

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGAL----------------DCFGYSRMQLLQS 904
             F  L DFC+RVD KK+ +R LE+L+ AG                  DC    R  L + 
Sbjct: 885  AFKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQ 944

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L      A    +N+     ++F     +      LE    +    R   EQ  LG Y +
Sbjct: 945  LPEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDVYWQPQD-RLRYEQATLGLYLT 1003

Query: 965  GHPLDVYK 972
            GHPLD Y+
Sbjct: 1004 GHPLDEYR 1011


>gi|326569634|gb|EGE19686.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis BC1]
          Length = 1240

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/1030 (38%), Positives = 581/1030 (56%), Gaps = 87/1030 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    AGI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY----LLDQG 125
            IIG ++ +    +       K       S++L   +  GYQ L+ L+S  Y    + + G
Sbjct: 62   IIGAEVVVGEHSD-------KDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 126  K---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT  S   I +    ++   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILTHRSE--IAQPLLSHNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYD-RYRESQVVQLA-------------YTHELPLVATNNSLFLSEEDYEAH 228
            Y+ ++R +  D ++ ES ++Q A             + H  P   TN+       D++AH
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASP-TETNDKNNTVSTDFDAH 231

Query: 229  DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            +  + +A+S  ++   RPR  T   Y K++ +M  +F+DLP+A++NT  +A RC+  + +
Sbjct: 232  EARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNVTITL 291

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVA--GLEVRLA------QGAIAKGYHAQDYRQ 339
               +LP F       I K E  E   K V+  GL  RL       Q         + Y +
Sbjct: 292  GINVLPDF------PIPKGETIETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDE 345

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RLD+EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL 
Sbjct: 346  RLDYELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLS 405

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            + LLFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +R
Sbjct: 406  YDLLFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVR 465

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLE 513
            DV R    P+   DR+ K+IP  P   + L+   D     +  L +P          + E
Sbjct: 466  DVTRVQGKPFGLGDRISKMIPKTPG--IKLEDAFDQEPQLKELLTNPDAPDHELALEIWE 523

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
            +++KLEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDF
Sbjct: 524  MAKKLEGLTRNVGKHAGGVLIAPNRISDFSAIYCDGEGH-PVSQYDKDDVEAVGLVKFDF 582

Query: 574  LGLKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSG 627
            LGL+ LT+LQ ++D +     AQ    +DL  +P DD + Y  +L    T  +FQLESSG
Sbjct: 583  LGLRNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSG 642

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDP 680
            M++ L  ++P  IED+IA+ +LYRPGP+++ +V  + +RK+G +++   HP     L+ P
Sbjct: 643  MKKYLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQP 702

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
             L+ T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  
Sbjct: 703  PLESTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVEGAIEQN 762

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            I   +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +
Sbjct: 763  IDGGLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTD 822

Query: 801  KIKKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASA 858
            ++     D R  F + I+PPSVN     F V D + I Y L A+KGVG      I+ A  
Sbjct: 823  QVVFLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARK 882

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL----------------DCFGYSRMQLL 902
            D  F  L DFC+RVD KK+ +R LE+L+ AG                  DC    R  L 
Sbjct: 883  DGAFKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLW 942

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            + L      A    +N+     ++F     +      LE    +    R   EQ  LG Y
Sbjct: 943  RQLPEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDVYWQPQD-RLRYEQATLGLY 1001

Query: 963  FSGHPLDVYK 972
             +GHPLD Y+
Sbjct: 1002 LTGHPLDEYR 1011


>gi|229186859|ref|ZP_04314014.1| DNA polymerase III subunit alpha [Bacillus cereus BGSC 6E1]
 gi|228596596|gb|EEK54261.1| DNA polymerase III subunit alpha [Bacillus cereus BGSC 6E1]
          Length = 1104

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/1032 (36%), Positives = 607/1032 (58%), Gaps = 62/1032 (6%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PII
Sbjct: 1    MHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPII 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G    I         ++ +  +P    +VLL     GYQ L+++ S   ++ + K+   I
Sbjct: 61   GLTASI--------FSEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 104

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               WL     +GLI ++ G  G I++    +    AE+    ++ +FG+  Y++LQ H  
Sbjct: 105  PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGN-FYMSLQHHAI 162

Query: 192  YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             D    + ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  
Sbjct: 163  QDELLLQEKLPAFINRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 222

Query: 251  D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F       +   E N
Sbjct: 223  DQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNETN 276

Query: 310  E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR     GL+ R        G   + +  RL+ EL+VI+ M FS YFLIV DF+++A
Sbjct: 277  DMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELSVISSMGFSDYFLIVWDFMKYA 329

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RR
Sbjct: 330  HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRR 389

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +
Sbjct: 390  DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 447

Query: 488  SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V + 
Sbjct: 448  TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 506

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+ G ++D+  +P  D
Sbjct: 507  QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIRFIVQKTGKEIDIRNLPLQD 566

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K
Sbjct: 567  EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 626

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GK KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +
Sbjct: 627  HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 686

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +
Sbjct: 687  DQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 746

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +
Sbjct: 747  EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 806

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G  T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL
Sbjct: 807  GMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSL 866

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961
                +YA               A + G   D +   K+ V+   + F      E+ VLGF
Sbjct: 867  KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLGF 909

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF 
Sbjct: 910  YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITFC 968

Query: 1022 EPAKEYEANFFP 1033
            +   E EA  FP
Sbjct: 969  DQNDEMEAVLFP 980


>gi|326560771|gb|EGE11138.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis 103P14B1]
          Length = 1240

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1028 (38%), Positives = 579/1028 (56%), Gaps = 83/1028 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +     GI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGDGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY----LLDQG 125
            IIG ++ +    +       K       S++L   +  GYQ L+ L+S  Y    + + G
Sbjct: 62   IIGAEVVVGEHSD-------KDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 126  K---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT  S   I +    ++   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILTHRSE--IAQPLLSHNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYD-RYRESQVVQLA-------------YTHELPLVATNNSLFLSEEDYEAH 228
            Y+ ++R +  D ++ ES ++Q A             + H  P   TN+       D++AH
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASP-TETNDKNNTVSTDFDAH 231

Query: 229  DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            +  + +A+S  ++   RPR  T   Y K++ +M  +F+DLP+A+ENT  +A RC+  + +
Sbjct: 232  EARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNVTITL 291

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRL 341
               +LP F   + + I    E   +  +  GL  RL       Q         + Y +RL
Sbjct: 292  GINVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERL 347

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            D+EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + 
Sbjct: 348  DYELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYD 407

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV
Sbjct: 408  LLFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDV 467

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEIS 515
             R    P+   DR+ K+IP  P   + L+   D     +  L +P          + E++
Sbjct: 468  TRVQGKPFGLGDRISKMIPKTPG--IKLEDAFDQEPQLKELLTNPDAPDHELALEIWEMA 525

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            +KLEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLG
Sbjct: 526  KKLEGLTRNVGKHAGGVLIAPNRISDFSAIYCDGEGH-PVSQYDKDDVEAVGLVKFDFLG 584

Query: 576  LKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMR 629
            L+ LT+LQ ++D +     AQ    +DL  +P DD + Y  +L    T  +FQLESSGM+
Sbjct: 585  LRNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMK 644

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPML 682
            + L  ++P  IED+IA+ +LYRPGP+++ +V  + +RK+G +++   HP     L+ P L
Sbjct: 645  KYLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPL 704

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            + T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I 
Sbjct: 705  ESTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNID 764

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++
Sbjct: 765  GGLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQV 824

Query: 803  KKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK 860
                 D R  F + I+PPSVN     F V D + I Y L A+KGVG      I+ A  D 
Sbjct: 825  VFLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDG 884

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGAL----------------DCFGYSRMQLLQS 904
             F  L DFC+RVD KK+ +R LE+L+ AG                  DC    R  L + 
Sbjct: 885  AFKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQ 944

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L      A    +N+     ++F     +      LE    +    R   EQ  LG Y +
Sbjct: 945  LPEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDVYWQPQD-RLRYEQATLGLYLT 1003

Query: 965  GHPLDVYK 972
            GHPLD Y+
Sbjct: 1004 GHPLDEYR 1011


>gi|297565291|ref|YP_003684263.1| DNA polymerase III subunit alpha [Meiothermus silvanus DSM 9946]
 gi|296849740|gb|ADH62755.1| DNA polymerase III, alpha subunit [Meiothermus silvanus DSM 9946]
          Length = 1262

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/1030 (38%), Positives = 577/1030 (56%), Gaps = 74/1030 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            S  F HL  H+ +SLL+GA  L +++   K  + ++P +A+TD  NLF A++F + A  A
Sbjct: 27   SCQFAHLHQHTQFSLLDGAARLKDLIKWVKQVSPEEPMLAMTDHGNLFGAVQFYKYATEA 86

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-Q 124
             ++PIIG +  +  +       QGK        + LL    EGYQ L  L SR YL    
Sbjct: 87   EVKPIIGYEAYVAAESRFD-RKQGKGLDGGYFHLTLLAKDFEGYQNLCRLASRAYLEGFY 145

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183
            GK   RI    L+E    G+I L+G     I +       + AE+RLL +  +FGD R +
Sbjct: 146  GKP--RIDREILRE-HNAGIIALSGCLGAEIPQFILQERHEDAERRLLEYLSIFGDKRYF 202

Query: 184  VNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H   ++ + ++V+ + A  + L +VATN+  ++ +ED EAH V++AV        
Sbjct: 203  IEVQDHGLPEQKKVNRVLKEFADKYGLGIVATNDGHYVRKEDAEAHAVVLAVQSKATWDD 262

Query: 243  KDRPRVTPDH-YLKNRSEMVSIFSD--------LPEALENTVEIARRCSFIL-----QVH 288
             +R +   D  Y+K   EM S              E  +N++EI R C+  L     Q  
Sbjct: 263  PNRWKFPCDEFYVKTPQEMRSTLEGERELWGKRFDELFDNSLEIGRMCNVELVPKKVQYR 322

Query: 289  AP---------------------ILPRFIEKECDDIQKE-----------EENELRNKAV 316
             P                     +L R+ ++  DD+ +E            + E+  KA+
Sbjct: 323  IPKYPLPEGRTEVTYLRELTFSGLLKRYPDRVTDDLYREFLRRLGRPVPHGDGEVLAKAL 382

Query: 317  AGLE----VRLAQGAIAKG--YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            A LE     R     + +G  +   +   R  +EL V+ RM F GY LIV DFI WAK  
Sbjct: 383  AELEDLEATRAYLPELKEGTPWGPWEILSRAVYELAVVERMGFPGYLLIVQDFINWAKSQ 442

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I VGPGRGS AGS+ AYA  IT+IDPL + LLFERFLNP R+SMPD D DF   RR EV
Sbjct: 443  GISVGPGRGSAAGSLVAYATRITNIDPLAYDLLFERFLNPARVSMPDIDTDFSDARRGEV 502

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I YV+++YG E VAQI TFG+L +KAA++D  R   +P  + D L KLIP     P  L+
Sbjct: 503  IEYVRSRYGDEMVAQIGTFGTLASKAAIKDAARVFGLPVKKADELAKLIPVVFGKPTPLE 562

Query: 491  -AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             AI      R     DP V R++E+++KLEGL R +S HAAG+VI D PL   +P+ R  
Sbjct: 563  KAIETIPDLRAEMEKDPLVARVMEVAKKLEGLNRQSSVHAAGVVISDVPLQDYIPLMRAG 622

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
              +  VTQ++M  +E  G +K DFLGL+TL+ L +    + + +GV +D   IP DD +T
Sbjct: 623  DGEGKVTQYDMGSVEALGFLKMDFLGLRTLSFLDECKRIVKESKGVDIDYDAIPIDDEKT 682

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL    T GIFQL+S+GM   + G++P  I+DIIAL +LYRPGP++NI  Y  R +G+
Sbjct: 683  FELLGRGETKGIFQLDSAGMTSTVRGLKPRRIQDIIALGALYRPGPMENIPTYIRRHHGR 742

Query: 669  EKIV-----SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            E +      +    ++P+L+ET G+ +YQEQ+MQIA   +GYSL EAD+LRRAMGKK  E
Sbjct: 743  EAVAYPQFPNAAKYLEPILRETYGIPVYQEQIMQIASAAAGYSLGEADLLRRAMGKKKME 802

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM K + +F  GA++ GI +  A  +F+LL  FA+YGFNKSH+AAYA+++YQTA++K HY
Sbjct: 803  EMVKHRAQFKKGAAQRGIPEDEADRLFDLLEAFANYGFNKSHSAAYAILTYQTAYVKAHY 862

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF AA +T+E  + +K+ ++ + AR   ++++PP +N     F      + + L+A+K
Sbjct: 863  PVEFHAALLTVERHDSDKVAEYIRAARAMGVEVLPPDINRSSFSFSAVGQNVLFGLSAVK 922

Query: 844  GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      I+ E      F SL DF  RVDS   N+RV ESL+ AGA D  G  R Q+L
Sbjct: 923  NVGEAPTEAIIRERERGGRFKSLPDFLKRVDSAVANKRVAESLIKAGAFDELG-ERGQML 981

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             +LD++ K+AQ   ++  +    +FA  +     + TL K    +   R   E+  LG Y
Sbjct: 982  AALDDLLKWAQAERESANSGMMGLFADAQ----SEPTLPKVPPLDEITRLRYEKEALGIY 1037

Query: 963  FSGHPLDVYK 972
             +GHPL  Y+
Sbjct: 1038 VTGHPLQRYE 1047


>gi|296121520|ref|YP_003629298.1| DNA polymerase III, subunit alpha [Planctomyces limnophilus DSM 3776]
 gi|296013860|gb|ADG67099.1| DNA polymerase III, alpha subunit [Planctomyces limnophilus DSM 3776]
          Length = 1176

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/1026 (37%), Positives = 583/1026 (56%), Gaps = 30/1026 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  F HL  HS +SLL+GA  L+ ++ K+ A    ++AITD  NL+ AL+F   A  
Sbjct: 1    MTSSRPFAHLHCHSQFSLLDGATRLDGLIKKVKASGMNSVAITDHGNLYGALDFYLMAKG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+ PI+G +  I     L+ +   +    +   + LL     G+Q L++L S+ ++  +
Sbjct: 61   AGVNPILGMEAYIAPGSRLEKSGASRMKEASY-HLTLLAMNRVGFQNLVKLSSKAFI--E 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G          + E  +EGLI L+G ++G + +       + AEK    + + FGDR ++
Sbjct: 118  GFYYKPRIDKEILEAHSEGLICLSGCAAGELSQHLLGERFEEAEKLCHWYSQTFGDRFFM 177

Query: 185  NLQRHRGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
             +Q + GY   R+   + V LA    LPLVATN++ +L+ ED    DVL+ V   +  S 
Sbjct: 178  EIQ-NAGYQIQRDCLERTVDLAKKMGLPLVATNDAHYLNTEDAAVQDVLLCVNTKSERSD 236

Query: 243  KDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              R ++  +  +++   EM + F    +A+  + EIA R    L +     P F   E  
Sbjct: 237  PKRMKMEGNQLFVRTPEEMYAAFEGFEDAVARSQEIADRVDIDLDLKTRHFPVFTTPE-- 294

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               K + + LR     GL+ R  +  I      Q++R RL FEL+VI +M +  YFLIV 
Sbjct: 295  --NKRDIDYLRELCEEGLKWRYGEENIR-----QEHRDRLAFELSVIEKMGYPSYFLIVW 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF+++A +  IP    RGS  G++ AY L ++ + P+++ LLFERFL+P R   PD DID
Sbjct: 348  DFVRFAIEKGIPAS-ARGSACGALVAYVLGLSHVCPIKYDLLFERFLDPSRTEPPDIDID 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC+DRR +VI Y + KYG   V+QI TFG+L+AKAA+RDVGR L +P  +VD + KL+P 
Sbjct: 407  FCRDRRQDVIDYTKAKYGEANVSQIGTFGTLKAKAAIRDVGRVLAVPLKRVDEIAKLVPE 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +  +A+   S  + A   DP +  L + + +LEGL R A THAAG+V+ DRP+S 
Sbjct: 467  ELGIELK-EALEKSSDLKAAYDTDPQIRELFDYAIQLEGLARSAGTHAAGVVVSDRPISD 525

Query: 542  LVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLS 599
             VP+     ++DL VTQ+    +EKAGL+K DFLGL+ LT+L K++  +A  RGV +D  
Sbjct: 526  YVPLQTISGKTDL-VTQWEGPTVEKAGLLKMDFLGLRNLTILDKAVKNVALHRGVTIDPV 584

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN-- 657
             +P DD ETY LL    T GIFQLES GMR  L  M+PD   DIIA  +LYRPGP++   
Sbjct: 585  KLPLDDKETYALLQRGETKGIFQLESGGMRDLLTKMKPDSFNDIIATSALYRPGPLEGGM 644

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            ++ Y   K+ +  +  +HP++D +L ET GV++YQEQVM+I   L G  L ++    +A+
Sbjct: 645  VMTYVEVKHKRAPLPRVHPIMDTILDETYGVMVYQEQVMRILNRLGGIELPQSYQCIKAI 704

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             KK  E + K K +F+ G+ KNG+ +  A  +FE++ KFA YGFNKSH+ AYA ++YQTA
Sbjct: 705  SKKKLETIAKYKAQFVEGSQKNGLPEAKATELFEMIEKFAGYGFNKSHSTAYAAVAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIY 836
            ++K HYP EF+AA ++ EM++ ++I +   D R+ NI+I+PP +N   V+F V G  ++ 
Sbjct: 765  FLKAHYPAEFMAALLSCEMEDTDRINEHIDDCRRMNIEIVPPDINHCDVEFTVRGPRQVA 824

Query: 837  YSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            + L AIKGVG  T + I+EA   K PF S+ D C RVD+K L++  LE LV AGALD   
Sbjct: 825  FGLGAIKGVGEATTQAIVEARQLKGPFTSIFDLCERVDAKSLSKGSLEILVKAGALDSIS 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-----GTFSDKITLEKFSVENSSV 950
              R      ++   + AQ ++K++    +N+F  ++     G  +   TL      +   
Sbjct: 885  PKRASQFACIERAVQAAQSLQKDKARGQKNLFGGDEADSQPGESTSSATLPDVPEWSHRE 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            +   E+ VLGFY + HPL      + +       +      G  + L  MV S ++  T+
Sbjct: 945  KLAYEREVLGFYLTSHPLTEQAETIGRYTSYQAMQLAELEDGVEVMLGGMVSSIKKATTK 1004

Query: 1011 KGSRIG 1016
            K SR G
Sbjct: 1005 KPSRNG 1010


>gi|219668439|ref|YP_002458874.1| DNA polymerase III subunit alpha [Desulfitobacterium hafniense DCB-2]
 gi|219538699|gb|ACL20438.1| DNA polymerase III, alpha subunit [Desulfitobacterium hafniense
            DCB-2]
          Length = 1190

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/1047 (38%), Positives = 607/1047 (57%), Gaps = 50/1047 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YSLL+GA  +  ++ K      P++AITD   ++  ++F +    AGI+P
Sbjct: 2    GFVHLHVHTEYSLLDGAARIEKLVKKAVELGMPSVAITDHGVMYGIIDFYKACKKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +      + T +          +VLL    EGY+ LI+LVS M  ++      
Sbjct: 62   IIGCEVYVAPH---RRTEKVPGRDDNNRHLVLLAENEEGYKNLIKLVS-MAHIEGFYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L+   + GLI L+   +G +      N  + A +  L ++++FG    ++ +Q 
Sbjct: 118  RVDKDILRR-HSRGLIALSACLAGEVSEYLLNNQLETAVESALEYEEIFGKGNFFLEVQD 176

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ R  + + ++     +P+VATN+  ++++ED    DVL+ +     ++   R  
Sbjct: 177  HGLEEQQRVNTGMFEVQRRTGIPMVATNDVHYVNKEDAFIQDVLICIQTGKNLTDASRMS 236

Query: 248  VTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + + + LK+ +EM  +F + PE LENT  IA RC    +     LP F   E   +   
Sbjct: 237  FSSEEFFLKSEAEMNLLFGEHPEILENTARIAERCQVDFKFGDNYLPVFEVPEGYTL--- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  LR K      +              + ++RLD+EL VIA+  FSGYFLIVADF Q+
Sbjct: 294  -DTYLRKKCYEAFPLFYPN-------QRTEEKERLDYELGVIAQTGFSGYFLIVADFCQY 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++N I VGPGRGS A S+ AY + IT ++P++  LLFERFLNP+R+SMPD DIDF  D 
Sbjct: 346  ARQNGIAVGPGRGSAAASMVAYLMGITTVEPMQHDLLFERFLNPERISMPDIDIDFDPDG 405

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+ VI YV  KYG ++V QIITFG++ AKAA+RDVGR L +P ++VD++ K IP+D    
Sbjct: 406  RERVINYVMEKYGADKVCQIITFGTMGAKAAIRDVGRVLGIPLARVDKVAKAIPSDLGMT 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+A      +    D  + +L EI++ LEG+ RHASTHAAG+VI    L   +P+ 
Sbjct: 466  LE-KALAVSPDLVKLLEEDGEIKKLYEIARSLEGMPRHASTHAAGVVIAKDALDTYIPLQ 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
            R       +TQF MK +E+ GL+K DFLGL+ LT++Q++L  +   RG  +DL  +P DD
Sbjct: 525  RTSDGGFTMTQFPMKTVEEVGLLKMDFLGLRNLTIIQETLKQIEGNRGEVLDLQSLPLDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T+ +L+   + G+FQLES GMR  L+ ++P C EDIIA+V+L+RPGP++ I  +  RK
Sbjct: 585  KATFDMLSLGNSTGVFQLESGGMRNVLKELKPSCFEDIIAVVALFRPGPMEQIPEFIRRK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G   +  +HPL++P+L+ T GVI+YQEQVMQIA+ L+GYSL  AD+LRRAMGKK KE M
Sbjct: 645  HGG-NVSYLHPLLEPILRSTYGVIVYQEQVMQIARDLAGYSLGRADLLRRAMGKKKKEIM 703

Query: 726  DKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            +++++ F            I GA K G+++  A  IF+L+AKFA+YGFNK HA AYAVIS
Sbjct: 704  EEERQSFIYGLQSPSGEEIIPGALKLGLTEKEAAEIFDLMAKFAEYGFNKGHATAYAVIS 763

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K +YP+EF AA ++  M + +K+  +  +ARQ  I+I+PP V    V F +   
Sbjct: 764  YQTAYLKANYPLEFNAALISTVMSSADKVSFYIHEARQSGIEILPPDVQYSQVGFSIEGR 823

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I + L AI+ VG      I+EA  +  FDSL DFC RVD+K LN+RVLESL+ AGA   
Sbjct: 824  GIRFGLGAIRNVGVNVVEKIIEARQEGLFDSLYDFCIRVDAKVLNKRVLESLLKAGAFSL 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVR 951
                R Q L +LD+I + AQ  ++++ +   ++F      F D +   +E   VE  S R
Sbjct: 884  L-CKRAQGLLALDSILEIAQQRQRDKESGQISLF-----DFGDDLDEGIELPDVEEYSPR 937

Query: 952  --FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN---NIRLAAMVVSKQQ 1006
                 E+  LG Y SGHPL+   P L+       E+ +  + G+    + L  +V   + 
Sbjct: 938  ELLTMEKEYLGLYLSGHPLESVLPKLKN---AVSEDILTCLEGDEEKKVILGGIVTGYRT 994

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              T++G  +      +     +   FP
Sbjct: 995  TVTKRGEMMASFVLEDLTGTIDVLVFP 1021


>gi|294671267|ref|ZP_06736119.1| hypothetical protein NEIELOOT_02976 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306994|gb|EFE48237.1| hypothetical protein NEIELOOT_02976 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 997

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/853 (42%), Positives = 507/853 (59%), Gaps = 48/853 (5%)

Query: 177 LFGDRLYVNLQRHRGYDRYRESQV--VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
           LF +  Y+ LQR      +  S      LA    LP+VAT+ + FL  ED+ AH+  + +
Sbjct: 18  LFPNAFYLELQRLPEKPEWERSVAGSTALARKLNLPVVATHPTQFLEPEDFLAHEARVCI 77

Query: 235 AHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
           A    ++ + RPR  +P  Y      M   F+DLPEALENTVEIA+RC+  + +    LP
Sbjct: 78  AEGWTLADRKRPREFSPSQYFVGAETMAERFADLPEALENTVEIAKRCNIHITLGKNFLP 137

Query: 294 RFIEKE---CDDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNV 347
            F   +    DD   +  NE       GL+ R+ Q       +     +Y++RLDFELN+
Sbjct: 138 LFPTPDGLSLDDYLVKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNI 190

Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
           I +MKF GYFLIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERF
Sbjct: 191 IIQMKFPGYFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERF 250

Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
           LNP+R+SMPDFD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++
Sbjct: 251 LNPERVSMPDFDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLEL 310

Query: 468 PYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
           P++  D+L KLIP +   P+ L  A+  + + +E   A+   D L+ +++KLE L R   
Sbjct: 311 PFTLCDKLSKLIPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLG 369

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            HA G++I    +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++   
Sbjct: 370 MHAGGVLIAPGKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE--- 426

Query: 587 DFLAQRGVK------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
             +AQ  +K      VD+  IP DD   Y +     T  +FQ ES+GM++ L+       
Sbjct: 427 --MAQNNIKNTTGDIVDVGTIPLDDQAAYKIFRDANTTAVFQFESTGMKKMLKTAHTTKF 484

Query: 641 EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
           E++IA VSLYRPGP+DNI  +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ
Sbjct: 485 EELIAFVSLYRPGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQ 543

Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
           ++ GYSL  AD+LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YG
Sbjct: 544 IIGGYSLGGADLLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYG 603

Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
           FNKSHAAAYA+ISYQTAW+K HYP EF+AA+M+ E+ + +++K F +DA    I  +PP 
Sbjct: 604 FNKSHAAAYALISYQTAWLKAHYPAEFMAATMSSELTDTDQLKLFYEDALANGITFLPPD 663

Query: 821 VNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
           +N     F   G+  I Y+L A+KGVG    + I+EA  D  F  L DFC RV  + +N+
Sbjct: 664 INESDYLFTPDGERHIRYALGAVKGVGEGAVQSIVEARQDGRFRDLFDFCERVGKEHMNK 723

Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
           R LESL+ AGA D    +R  LL ++D     A+    N        FA +       I 
Sbjct: 724 RTLESLIKAGAFDGTNPNRAMLLANIDLAIGNAEQQAANANQGGLFDFAEDA---IGAIE 780

Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG--------------IKGYEE 985
           + + +    +V+   E+ V+GFYFSGHP   Y   +R+                + G+  
Sbjct: 781 MVETAPWGDAVKLAEEKSVIGFYFSGHPFGPYAEEIRRFAPQKLSKLKPQDSVRVAGFAT 840

Query: 986 SVATIRGNNIRLA 998
           ++ TI G N +LA
Sbjct: 841 AIRTIMGKNGKLA 853


>gi|57505669|ref|ZP_00371595.1| DNA polymerase III, alpha subunit [Campylobacter upsaliensis
           RM3195]
 gi|57015942|gb|EAL52730.1| DNA polymerase III, alpha subunit [Campylobacter upsaliensis
           RM3195]
          Length = 1197

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/999 (37%), Positives = 586/999 (58%), Gaps = 49/999 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YS+L+GA  L  +   +      ++A+TD  N+F A++F Q   + G++PI
Sbjct: 4   FTHLHLHTEYSMLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMRSHGLKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  +   D+L      +  F     + L      GY+ L+ L S+ Y+   G     
Sbjct: 64  IGLEAYLHNMDDLS-DKSSRQRF----HLCLYAKNEMGYKNLMYLSSQSYI--HGLYYYP 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180
                L E  +EGLI  +    G +        +R   F +   + A +  L +K++FGD
Sbjct: 117 RINKKLLEKHSEGLICSSACLQGEVNWHLNIHNERNVRFGAKGYEAAREAALWYKRVFGD 176

Query: 181 RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y  + RH   D R  +  +++L+   ++ ++ATN++ +  +E  EAH+V M +     
Sbjct: 177 DFYFEIMRHGINDQRAIDDDIIRLSKELDIKIIATNDTHYTFKERAEAHEVFMCIGMGKR 236

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
           ++  DR R +  + Y+K   +M  +F+D+PEA+ NT ++A +C+  L++  P  P F   
Sbjct: 237 LNDPDRMRHSVKEFYVKTSEQMSELFADIPEAISNTQDLANKCNLELKLGDPTPPNFKFT 296

Query: 296 --------IEKECDDIQKEEENE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                   +    ++++   EN+     +    GLE RL    I +  H  +Y+ RL+ E
Sbjct: 297 REYAKEFNVALAQENVEFSFENDDLVFEHLCRKGLEERLK--FIDESKH-DEYKARLETE 353

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           + +I  MKFSGY LIV DFI+ AK  NIPVGPGRGS AGS+ AYAL ITDIDPL ++LLF
Sbjct: 354 IKIIKEMKFSGYMLIVHDFIKVAKDKNIPVGPGRGSAAGSLVAYALKITDIDPLPYNLLF 413

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           ERFLNP+R+SMPD D+DFC+DRRDEVI YV +KYG ++VAQ+ TF  L AK  +RDV R 
Sbjct: 414 ERFLNPERVSMPDIDVDFCRDRRDEVINYVIDKYGSDKVAQVSTFNKLLAKGVIRDVARV 473

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
           L +    VD   KL+P +    +  +A   + + +E     P    L E ++ LEGL R+
Sbjct: 474 LDISLQDVDEFIKLVPEELKITLD-EAYEKEPKIKEFIEKHPKGKELWEYAKSLEGLNRN 532

Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
           A  HAAG+VI +  L    P++R  ++D    +TQ++   +E   LIKFDFLGLKTLTL+
Sbjct: 533 AGVHAAGLVISNESLWNKTPLFRQSKNDERHLITQYSKDHLEDVDLIKFDFLGLKTLTLI 592

Query: 583 QKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
             ++  + +R  K +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593 HNAIKLIKERYNKDIVWESIDVNDSKVYKTIQSGNTLGIFQIESDGMQSLNARLKPENFE 652

Query: 642 DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
           D+IA+++LYRPGP+++ ++  + +RK+G +KI+    ++  +L+ T GVI+YQEQVMQI 
Sbjct: 653 DLIAVLALYRPGPMESGMLDDFIDRKHGLKKIIYPFDVLKEVLEPTYGVIVYQEQVMQIV 712

Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
           Q++ G+SL  ADV+RRAMGKK  E+M K K+ F +GA K G ++  A +++EL+ KFA Y
Sbjct: 713 QIIGGFSLGGADVVRRAMGKKDPEKMAKLKDEFANGAEKQGYNRAKAEDLWELIVKFAGY 772

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           GFNKSH+AAY +I++QTA++KT+YP EF+AA +T E + +E +  + ++ ++ NI+++PP
Sbjct: 773 GFNKSHSAAYGLITFQTAYLKTYYPSEFMAALLTSEQNKIENVAMYIEEMKKMNIKLLPP 832

Query: 820 SVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVD 873
            +N    +F       G   I Y L AIK VG     +++E  S +  F  L DF S++D
Sbjct: 833 RINKAISEFSAIKQEDGTEAIVYGLGAIKSVGGPAIENVLELRSKNGDFKDLHDFLSKID 892

Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
           + K+NRR LE  + AG+ D FG++R  L  +LD + + A+ + + R N   ++F  E+  
Sbjct: 893 TAKINRRTLEGFIKAGSFDDFGFTRKCLFNNLDTLAESARKMAEVRKNSASSLFGAEELN 952

Query: 934 FSDKITLEKFSVENSSV-RFENEQRVLGFYFSGHPLDVY 971
              KI +   + E  ++ +   E+ +LG Y SGHPLD +
Sbjct: 953 ADTKINIVMDNSEFEAMEKLGYEKEILGIYISGHPLDKF 991


>gi|261367002|ref|ZP_05979885.1| DNA polymerase III alpha subunit [Subdoligranulum variabile DSM
            15176]
 gi|282571120|gb|EFB76655.1| DNA polymerase III alpha subunit [Subdoligranulum variabile DSM
            15176]
          Length = 1150

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/1028 (37%), Positives = 580/1028 (56%), Gaps = 50/1028 (4%)

Query: 32   ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91
            + + + A  Q A AITD   ++  + F   A AAGI+PIIGC++ +  +      N+   
Sbjct: 1    MFEHLKAMGQTACAITDHGVMYGCVAFFDAAKAAGIKPIIGCEVYVATRTRFDKVNR--- 57

Query: 92   PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151
                   ++LL     GY+ LI++VS  +L  +G  S       L E   EGLI L+   
Sbjct: 58   -IDGNSHLILLCKNEVGYRNLIKMVSAGFL--EGFYSKPRIDKDLLEQHHEGLICLSACL 114

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHEL 209
            +G I +A      + A++  L ++ LFG +  Y+ LQ H    D+    Q+++LA    +
Sbjct: 115  AGEIPKAILAGDYERAKQTALYYRDLFGAENYYIELQDHGLEEDQVVLPQLIRLARETGI 174

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLP 268
            P+VATN++ ++++ED +   +L+ +     ++  DR     D  YLK+  EM  +FS +P
Sbjct: 175  PMVATNDAHYITKEDSKMQSILLCIQTGKTIADADRMEFQTDEFYLKSADEMYELFSMVP 234

Query: 269  EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
            EA ENT +IA +C+F        LP F  +  D +  E +         GLE R      
Sbjct: 235  EACENTNKIAEQCNFEFTFGETKLPYF--RAPDGM--ENQAYFEKLCWEGLERRYP---- 286

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
              G      R+RL +E+ V+  M ++ Y+LIV DFI +AK  +IPVGPGRGSGAGS+ AY
Sbjct: 287  --GKVTDALRERLAYEIKVVKNMGYTNYYLIVYDFINYAKSRDIPVGPGRGSGAGSLAAY 344

Query: 389  ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
             + ITDIDP+R++L+FERFLNP+R+SMPDFD+DFC +RR EVI YV  KYG + VAQI+T
Sbjct: 345  CVGITDIDPIRYNLIFERFLNPERVSMPDFDVDFCYERRQEVIDYVNEKYGRDHVAQIVT 404

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS-RFREARLADPS 507
            FG++ A+AA+RDVGR + M Y  VD++ KLIP +    ++LQ   D S   +    AD  
Sbjct: 405  FGTMAARAAVRDVGRVMGMAYQDVDKVAKLIPME--LKMTLQKALDVSPDLKAMYEADAQ 462

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            V  L++ S K+EG+ RHASTHAAG+VI   P ++ VP+       LPVTQFNM  IE+ G
Sbjct: 463  VRELIDTSLKVEGMPRHASTHAAGVVITREPATEYVPL--STNDGLPVTQFNMVEIERLG 520

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            L+K DFLGL+TLT++  +   + ++  +  ++ I +DD +TY +L    T GIFQLES+G
Sbjct: 521  LLKMDFLGLRTLTVIHDTETAVRRKDPEFRMATISYDDPDTYAMLAKGETEGIFQLESTG 580

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            M Q L  M+P  +EDIIAL+SLYRPGP+D+I  Y   +    KI    P +  +L  T G
Sbjct: 581  MTQVLVSMRPRNLEDIIALISLYRPGPMDSIPTYLRNRREPGKISYKTPQLAHILDVTNG 640

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS---------- 737
             I+YQEQVMQI + L+G+S  +AD +RRAM KK  + M+ ++E F+ G +          
Sbjct: 641  CIVYQEQVMQIFRELAGFSFGQADNIRRAMSKKKHKVMEAEREHFVHGCTEPGKECAGCV 700

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNGI + +A  I++ +  FA Y FNKSHAA YA +++QTA++K HYP EF+AA +T  +D
Sbjct: 701  KNGIPEDVANEIYDEMISFASYAFNKSHAACYAYVAFQTAYLKCHYPHEFMAALLTSVLD 760

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
            N  K+ ++  + ++  I+++ P +N     F    + I + L A+K VG      +++  
Sbjct: 761  NTSKVIEYTTECQRLGIKVLQPDINVSRGGFTADGDCIRFGLNAVKSVGRNLIDAVVKER 820

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
             ++P+  L DFC R+   +LNRR LE+L+ +GA D    SR  +L+ ++ I K  +   +
Sbjct: 821  QNRPYRGLYDFCRRMYGNELNRRALENLIKSGAFDALEPSRRAMLECVEGILKSVETDMR 880

Query: 918  NRTNKHENIFAHEKG----TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
                   ++F    G    T  +   + K S   +S   + E+ V G Y SGHPLD Y+ 
Sbjct: 881  QNLEGQMDLFGMMSGESQETAINDYKVPKLSEYPTSDLLKMEKEVSGLYLSGHPLDAYRE 940

Query: 974  ILRKMGIKGYEESVATIRG--------NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             + ++       ++A ++G          + +   VV  +   T+  + + + T  +   
Sbjct: 941  QIAQISTC----TIAQLQGEEAKQFDNQTVTILCTVVKNKIMTTKSNTLMAFTTIEDLTG 996

Query: 1026 EYEANFFP 1033
              E   FP
Sbjct: 997  TMELLVFP 1004


>gi|322382903|ref|ZP_08056738.1| DNA polymerase III DnaE-like protein [Paenibacillus larvae subsp.
            larvae B-3650]
 gi|321153172|gb|EFX45627.1| DNA polymerase III DnaE-like protein [Paenibacillus larvae subsp.
            larvae B-3650]
          Length = 1210

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/1053 (35%), Positives = 602/1053 (57%), Gaps = 48/1053 (4%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75
            +HS YSLL+GA  ++++ ++ A     A+A+TD   ++  + F +     GI+PIIGC++
Sbjct: 1    MHSEYSLLDGAARIHDLTERAAELGMSALALTDHGVMYGTIAFYKACKQRGIKPIIGCEV 60

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
                    +  N+ + P   +  ++LL     GY+ L++L S  +L +      RI    
Sbjct: 61   YFTTGSIRQKGNRQEQP---IYHLILLAKNNTGYRNLMKLCSIGHL-EGFHYKPRIDAEH 116

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY 195
            L    +EGLI L+      + +    +  + A K    ++ +FG+  Y+ +Q H   ++ 
Sbjct: 117  LA-AHSEGLICLSACLGSEVSQHLLHDRKEDARKAAERYRSIFGEDFYLEIQDHGMMEQK 175

Query: 196  R-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHY 253
            +    +++L+    +PL+ATN+  ++ E D+E  DVL+ +     V  +DR ++ T   Y
Sbjct: 176  KVMHSMIELSRETGIPLIATNDVHYVREPDHEVQDVLICIGTGKTVEDEDRLKMGTSQLY 235

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            LK R  M ++F+ +PEA+ NT ++A +C   +++   ILP F          E   +L  
Sbjct: 236  LKTREAMAALFAHVPEAVLNTEKVAAQCQVEIELGHSILPSFEPIPESLTAAEYLKQLCL 295

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            + ++G      +         +   Q+L +EL+VI  M FS YFLIV DFI++A +  I 
Sbjct: 296  EGISGRYGTRQEWNDPSSDFRKQVEQKLYYELDVIESMGFSDYFLIVWDFIRYAHEQGIM 355

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
             GPGRGS AGS+ AYAL ITD+DP+ ++LLFERFLNP+R++MPD DIDF  +RRDEVI Y
Sbjct: 356  TGPGRGSSAGSLVAYALNITDVDPIEYNLLFERFLNPERITMPDIDIDFNDERRDEVIDY 415

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            V  KYG ERVAQIITFG++ AKAA+RDVGR L +PY++VD+  KLIPN     +   A+ 
Sbjct: 416  VVRKYGKERVAQIITFGTMAAKAAVRDVGRVLNLPYNEVDKAAKLIPNHLGMTID-HALE 474

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
             +S  RE     P    LL +++++EG+ RHASTHAAG+VI   PL+  VP+ ++     
Sbjct: 475  VNSDLRELAEKQPKTAELLNMAKRVEGMPRHASTHAAGVVISRDPLTDYVPL-QEGTEQT 533

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLL 612
            P+TQ++M+ +E  GL+K DFLGL+TL++++++L ++  Q G  VD +     D +TY LL
Sbjct: 534  PLTQYSMEHLESIGLLKIDFLGLRTLSIIERTLAWIKEQEGKLVDWTQTDKSDPKTYELL 593

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T G+FQLES GMR+ L+ ++P   EDII++++LYRPGP++ I  Y   K+ + + V
Sbjct: 594  SRGETTGVFQLESPGMRRVLKELKPSRFEDIISVLALYRPGPMEFIPQYIACKHKQTEPV 653

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
              HP ++ +LK+T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E +D+Q+  F
Sbjct: 654  YPHPSLETILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREVLDEQRSHF 713

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            + G+   G +   A ++++++ +FADYG+ ++HA AY V+++QTA++K HYP  F+A+ +
Sbjct: 714  VEGSLGQGFTAEEANHVYDMIVRFADYGYPRAHATAYGVLAFQTAYLKAHYPRHFMASML 773

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TPCVDFKVG--------------- 831
            T    N  K+ ++  + R+  + ++PP +N      TP      G               
Sbjct: 774  TAVTGNQRKMAEYVDECRRMKLDVLPPDINESGVLFTPVASPGFGTEPARYAGEPAEEGM 833

Query: 832  ------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                  +  I + LAAIK VG +    +++    + F SL DFC RVD +  N+RV+ESL
Sbjct: 834  ADKIPVNGAIRFGLAAIKNVGASAIEAVLKERRKETFTSLLDFCRRVDLRICNKRVIESL 893

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEKGTFSDKITL 940
            + AGA D     R QL+  LD+  + A    K + +   ++F      H +    D   L
Sbjct: 894  IQAGAFDTLPGHRAQLVAMLDDTAEAALKWRKEKDDLQLHLFGFVEEPHWEVEVPDVPML 953

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
             K        + + E+ ++G Y SGHPLD ++ +L ++      +       + + +A M
Sbjct: 954  TKLQ------QLDYERELIGMYLSGHPLDAHEDLLGRLEADPLYQLQEYPDHSEVVVAGM 1007

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V S +   T++G  + ++   +   + E   FP
Sbjct: 1008 VASSKTIVTKRGEPMAFMELEDRIAKVEIVLFP 1040


>gi|303241705|ref|ZP_07328202.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
 gi|302590706|gb|EFL60457.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
          Length = 1169

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/1070 (36%), Positives = 617/1070 (57%), Gaps = 69/1070 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA  + +++ +       +IAITD   ++  ++F ++A   GI+PI
Sbjct: 4    FVHLHVHTEYSLLDGANRIKDLIKRTKELGMDSIAITDHGVMYGVVDFYKEAVNNGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +GC+  +      +   QG     + P  +VLL     GY+ L+++VS +   +      
Sbjct: 64   LGCE--VYTAKRTRHDKQG--VLDSDPGHLVLLAKDNRGYKNLMKIVS-IGFTEGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            RI    L+   +EGLI L+   SG + +A   N  + A+K    +  +FG    Y+ LQ 
Sbjct: 119  RIDFEVLERY-SEGLIALSACLSGDVPKALMNNDFERAKKVSQRYNDIFGKGNFYLELQS 177

Query: 189  HRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            + G +  +   SQ+V+L+    +PLVATN++ +L +ED  AH+VL+ +     ++ +DR 
Sbjct: 178  N-GIEEQKLVNSQLVKLSKETGIPLVATNDAHYLRKEDARAHEVLLCIQTGKNMNDEDRM 236

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  T D Y+K+  EM  +F ++PEA++NTV+I   C+  L+     LP+F   +  D  K
Sbjct: 237  RFSTEDFYVKSPEEMADVFVNVPEAIQNTVKIGEMCNVELEFGKLHLPKFSIPDNKDAFK 296

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 L+     GL  RL    I      +D  +RL++EL+VI +M +  YFLIV DFI+
Sbjct: 297  Y----LKELCYEGLN-RLFGECI------EDKLERLEYELSVIKQMGYVDYFLIVGDFIK 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK N IPVGPGRGS AGS+ AY L IT+IDPL+++LLFERFLNP+R++MPD DIDFC +
Sbjct: 346  YAKDNGIPVGPGRGSAAGSLVAYCLGITNIDPLKYNLLFERFLNPERVTMPDIDIDFCFE 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV  KYG ++V+QIITFG++ A+AA+RDVGRAL + YS+VD + K+IP     
Sbjct: 406  RRQEVIDYVVRKYGEDKVSQIITFGTMAARAAIRDVGRALDIAYSEVDIVAKMIPMQIGM 465

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+  +   +     D  +  +++ ++ LEG+ RHASTHAAG+VI   P+++ VP+
Sbjct: 466  NIG-KALEMNPELKAKYEQDNLIKDMIDTARLLEGMPRHASTHAAGVVISKDPITEYVPL 524

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  S    TQF M  +E+ GL+K DFLGL+TLT+++ ++D + +    K+D+  +  +
Sbjct: 525  QKNDES--VTTQFPMGQLEELGLLKMDFLGLRTLTVIRDAVDLVYENYNTKLDIDRLEMN 582

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D   + ++    T G+FQLES+GM Q ++ +QP  +EDIIA +SLYRPGP+D I  Y   
Sbjct: 583  DPNVFKIIGEGKTSGVFQLESAGMTQFMKELQPTSLEDIIAGISLYRPGPMDQIPRYIKN 642

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            KN    +   HPL++ +L  T G ++YQEQVMQI + L GYS+  +D++RRAM KK    
Sbjct: 643  KNVPAGVKYDHPLLENILNVTYGCMVYQEQVMQIVRDLGGYSMGRSDLVRRAMSKKKISV 702

Query: 725  MDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            M+++++ FI             G  +NG+ + IA  IF+ +  FA Y FNKSHAAAYAV+
Sbjct: 703  MEQERKNFIHGIDDENGNIVVMGCVRNGVDEKIANKIFDEMMDFASYAFNKSHAAAYAVV 762

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTAW+K +YPVEF+AA +   + + +KI ++  + +  NI+++PP +N   + F V +
Sbjct: 763  AYQTAWLKCYYPVEFMAALLNSFLGSSDKISQYVHECKVLNIEVLPPDINESQMKFTVVN 822

Query: 833  NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             +I + LAA+K VG    + ++ E   D  + S  DFC R+D K +N+R +ESL+ +GA 
Sbjct: 823  GKIRFGLAAVKNVGEGAVKSVIDERRTDGNYRSFRDFCDRIDGKDVNKRCIESLIKSGAF 882

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN---- 947
            D  G  R +L+   + +      ++K       ++F    GT  DK+   + S       
Sbjct: 883  DSMGVYRSRLIAVFEKMLDGIAQIKKRNMEGQLSLFELSMGT-DDKVNSSETSFYEDEDI 941

Query: 948  --------SSVRFENEQRVLGFYFSGHPLDVYKPILRKM--------------GIKGY-- 983
                    + V    E+ +LG Y SGHPL  ++  L KM                + Y  
Sbjct: 942  YPDINEYPNKVLLSMEKEMLGLYISGHPLSEFEEELNKMVSLFSSELNVDANQSEEAYSL 1001

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +++     G N+ +  ++ SK+ K TR  + + ++T  +     E   FP
Sbjct: 1002 DDAKNISDGMNVIVGGIITSKKTKTTRNNNLMAFLTLEDLYGMMEVIVFP 1051


>gi|237752431|ref|ZP_04582911.1| DNA polymerase III subunit alpha [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375920|gb|EEO26011.1| DNA polymerase III subunit alpha [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 1164

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/1009 (37%), Positives = 593/1009 (58%), Gaps = 58/1009 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + ++P F HL +H+ YSLL+G   +  +  KI      ++A+TD  N+F A+EF +   A
Sbjct: 2   MSQTPKFTHLHLHTEYSLLDGLNKVKVLAKKIKEYGMDSVAVTDHGNMFGAIEFYKAMKA 61

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            GI+PI+G  ++  + +  +++++    F     + L     EGY+ L+ L S+  L   
Sbjct: 62  EGIKPILG--MEAYLHNAEEISDKSNQRF----HLCLYAKNLEGYKNLMYLSSQACLYGF 115

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID------------RAFFFNSSQVAEKRLL 172
             +  RI    L+E  + GLI  +   +G +             R  +  + +VA    L
Sbjct: 116 HMKP-RISKKMLRE-HSAGLICSSACLNGEVQWHLNTKKDDNKGRKGYERAKEVA----L 169

Query: 173 TFKKLFGDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            +K++FG+  Y+ L RH G +  +  ++Q+++L+    + ++ATN++ + ++ D  A +V
Sbjct: 170 EYKEIFGEDFYLELMRH-GIEEQQLIDNQLLKLSQETGIKIIATNDTHYANQSDSTAQEV 228

Query: 231 LMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
              +         +R R T  + Y+K   +M  +++DLPEALE+T EIA +C+  L +  
Sbjct: 229 AFCIGFGKDFDDPNRMRHTVQEFYIKTPEQMAELYADLPEALEHTQEIANKCNLELHLGD 288

Query: 290 PILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
           P  P F       + E  D  ++ E     K   GL+ RL    + +  H + Y +RL+ 
Sbjct: 289 PTPPSFKFTQEYAKAEGLDFTQDSEY-FAYKCREGLKKRLLN--VPQEKHTE-YAERLER 344

Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
           E+ +I  MKF GY LIV DF++ AK+  IPVGPGRGS AGS+ A+ L IT+IDPL++ LL
Sbjct: 345 EIEIINSMKFPGYMLIVWDFVRAAKERGIPVGPGRGSAAGSLVAFCLEITNIDPLKYDLL 404

Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           FERFLNP+R+SMPD D+DFCQ RR E++ YV  KYG   VAQ+ITFG ++AKA +RDV R
Sbjct: 405 FERFLNPERVSMPDIDMDFCQSRRGEILDYVTEKYGRHNVAQVITFGMMKAKAVIRDVAR 464

Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKL 518
            + MPY+  D   KLIP +      L+   +D+  +E ++A     DP   ++ E +  L
Sbjct: 465 VMGMPYNDADSFAKLIPKE------LEITLEDAFNKEPKIAELISRDPLAKKVWEFALIL 518

Query: 519 EGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
           EG  R+  THAA +VI   + L    P+YR  R  +  TQ++MK++E   LIKFDFLGLK
Sbjct: 519 EGTKRNPGTHAAAVVIDSTQELWHKAPLYRSQRDGIIATQYSMKYLEDVDLIKFDFLGLK 578

Query: 578 TLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
           TLT++  +L  + +R G ++D   I  +D + Y  L +  TLG+FQ+ESS  +   + M+
Sbjct: 579 TLTVVDDALKLIEKRSGKRIDFLNIDVNDKKVYETLQSGNTLGVFQIESSMFQGINKRMR 638

Query: 637 PDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
           P   EDIIA ++L RPGP+++ +V  + NRK+GKE IV +   ++P+L+ T G I+YQEQ
Sbjct: 639 PSTFEDIIATIALGRPGPLESGMVDDFINRKHGKEPIVYMFDELEPILRPTYGTIVYQEQ 698

Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
           VMQI Q + G+SL  AD++RRAMGKK  + M   K +F  GA   G  +  A  ++EL+ 
Sbjct: 699 VMQIVQRIGGFSLGGADLIRRAMGKKDAQIMADNKSKFADGAVAQGFDRAKAEELWELIV 758

Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
           KFA YGFNKSH+AAYA+I+++TA++KT+YP EF+AA +T E ++ +K+ ++ ++A Q  I
Sbjct: 759 KFAGYGFNKSHSAAYAMITFETAYLKTYYPKEFMAALLTSEKNDTDKVVEYTEEANQMGI 818

Query: 815 QIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFC 869
           +++PPS+    ++F V    G+  I + L AIKG G      I+E    +  F  LEDF 
Sbjct: 819 KVLPPSIQKSELEFSVAEVDGEASILFGLGAIKGAGEIAINIILEERKQNGNFKDLEDFL 878

Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            R+D  K+N++ LE+ + +GALD  GY+R  LL+ ++++ + A+  +  +     ++F +
Sbjct: 879 KRIDPSKVNKKSLEAFIKSGALDGMGYTRKSLLEQVESLTEAAKLSQTAQKEAAGSLFGN 938

Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
           ++     ++ L+     +     E E+  LGFY SGHPLD YK   +++
Sbjct: 939 DEELMRVQLDLQDLGEYSQKEILEFEKESLGFYASGHPLDAYKESFKEI 987


>gi|237756627|ref|ZP_04585141.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium yellowstonense
            SS-5]
 gi|237691212|gb|EEP60306.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium yellowstonense
            SS-5]
          Length = 1166

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/1055 (37%), Positives = 601/1055 (56%), Gaps = 49/1055 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +HS YSLL+G +    +  K A     A+ +TD  N+F A+EF ++    G++P+
Sbjct: 5    FVHLHLHSHYSLLDGMIKPKELAKKAAEYGYKAVGLTDHGNIFGAVEFYEEMRKVGVKPL 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IG +      +  +   +G     T  +  ++L      G++ L++L S  Y   +G   
Sbjct: 65   IGME-SYFTNNRFEKKGEGSDDILTDKNYHLILFAKDKTGFKNLMKLSSIAYT--EG-FY 120

Query: 129  VRICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             +  + W L E   EGLI  T    G +         + A+K     K +FGD LY  +Q
Sbjct: 121  YKPRIDWELLEKYHEGLICQTACLKGFVPNLLAQGKYEEAKKYGKRLKDIFGDDLYFEIQ 180

Query: 188  RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV----SQ 242
             +   ++   ++ +++LA    + +V TN+S +L+ ED+ AHDV+ A+     +    S+
Sbjct: 181  INGLEEQNIANEGIIRLAKELGVKVVGTNDSHYLNPEDHTAHDVVKALQMKKTLKELYSE 240

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKE 299
                RV   H+ +   EM   F    E L+NT+EIA +C+  +   +    + P+F   E
Sbjct: 241  GKAFRVKGLHFTRP-EEMYEKFKGYEEYLKNTMEIAEKCNLEIDTAETRGYLFPKFETPE 299

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 +  E   R     GLE RL           ++YR+RLD+E+NVI +M F+ YFLI
Sbjct: 300  GMTPAQYFEKLARE----GLEKRLESIKDLTPEKLKEYRERLDYEINVINQMGFAEYFLI 355

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI +AKKN IPVGPGRGS  GS+ AY L IT++DPLR  LLFERFLNPDR+SMPD D
Sbjct: 356  VQDFINYAKKNGIPVGPGRGSAGGSLVAYCLRITEVDPLRHGLLFERFLNPDRISMPDID 415

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC +RR++VI YV+ KYG + VAQIITF  +++K  +RDV R L  PY + DR+ K+I
Sbjct: 416  VDFCMERREKVIDYVKQKYGEDSVAQIITFNFMKSKMVIRDVARTLGFPYQEADRIAKMI 475

Query: 480  PNDPAHPVSL---QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
               P    +L   + +     F++    D ++  LL++++KLEG  RH   HAAGIVI  
Sbjct: 476  LPGPTQGSTLTIDENLEAHPDFKKLYETDENIRELLDLARKLEGSARHTGIHAAGIVIAP 535

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVK 595
             PL + VP+YRD   +   TQF MK +E+ GL+K DFLGLKTLT L      + +R GV 
Sbjct: 536  GPLDEYVPVYRDKDGN-RATQFEMKTLEQLGLVKMDFLGLKTLTELDYMKKLIKERHGVD 594

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD + +PFDD   + LL +  T G+FQLES GM+  L  ++P  +++IIA+++L+RPGP+
Sbjct: 595  VDYNSLPFDDQNVFKLLQSGRTTGVFQLESKGMQDLLVRLKPSNLDEIIAILALFRPGPL 654

Query: 656  DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             + +V  Y  RK+G++ I      +  +LKET G+I+YQEQ+M ++ +LSG++++EAD L
Sbjct: 655  MSGMVDEYIERKHGRKPIEYPFEEVKDILKETYGLIVYQEQIMFMSNILSGFTMAEADTL 714

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+A+GKK  E M K K+RFI GA + G SK     +++ + KFA Y FNKSH+ AYA ++
Sbjct: 715  RKAIGKKNPEVMAKMKDRFIGGAVERGFSKEKVEKLWDDIEKFASYSFNKSHSTAYAYLT 774

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD- 832
            Y TAW+KT+YP EF A  ++ E +N  K      D   FNI+++PP VN    +F + + 
Sbjct: 775  YWTAWVKTYYPEEFFAVKLSTE-NNDSKFLNLLLDMENFNIKLLPPDVNKSMPEFAIEEK 833

Query: 833  NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            ++I + L+ IKG+G   A+ I+E    + PF  + DFC R D+K  N++VLESL+ AGA 
Sbjct: 834  SKIRFGLSRIKGIGEEVAKSIVEEREKNGPFVDIFDFCERFDTKVANKKVLESLIKAGAF 893

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-------HEKGTFSDKITLEKFS 944
            D  G  R  LL++++      Q    +++    ++FA       + K  + D   L    
Sbjct: 894  DFEGIDRGILLENVEKAITTGQKARDSKSAGQNSLFALTTTPVVNVKHIYEDGTKL---- 949

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIR----GNNIRLA 998
             E   +R E E  VLGFY SGHPL+ YK  L+   +K  E  ES    +    G+ +++A
Sbjct: 950  TEKEKLRLEKE--VLGFYLSGHPLNAYKKELKNKVLKISEIIESAFGDKTFQSGSKVKIA 1007

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++   + KKT+ G+ +     S+   + +   FP
Sbjct: 1008 GVIDEIKYKKTKSGATMVVFQISDETGQMDVRAFP 1042


>gi|116332230|ref|YP_801948.1| DNA-directed DNA polymerase, alpha subunit [Leptospira borgpetersenii
            serovar Hardjo-bovis JB197]
 gi|116125919|gb|ABJ77190.1| DNA-directed DNA polymerase, alpha subunit [Leptospira borgpetersenii
            serovar Hardjo-bovis JB197]
          Length = 1147

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/1010 (38%), Positives = 590/1010 (58%), Gaps = 44/1010 (4%)

Query: 43   AIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            ++A+TD  N+F A+EF  +A   GI+PIIG +  +   +  + T   K    +   ++LL
Sbjct: 11   SVAMTDHGNMFGAVEFYNEATKQGIKPIIGSEFYVS-PNRKQETEMVKIADGSAYHLILL 69

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
                EGY+ LI L S+ Y     K++ RI    L +    GL+ LT   +G ++R     
Sbjct: 70   AKNEEGYKNLIRLSSKSYTEGFYKKA-RIDYDLLAQ-HNGGLVCLTACLAGEVNRKILEG 127

Query: 163  ----SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNS 217
                S Q+A K    F+K   +  Y+ +Q H   ++     Q+        +PLV TN+S
Sbjct: 128  KIDESFQLAGKLNEIFRK---EDFYMEIQNHGIPEQMTVAKQIYDFGKRTGIPLVVTNDS 184

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
             FL ++D EA D+L+ +     ++         + Y+K+  EM  +F ++PEA  NT+EI
Sbjct: 185  HFLKKDDQEAQDILLRIGMQKRITDPMEFGFNGEFYVKSPDEMARVFPEIPEAFYNTLEI 244

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH--AQ 335
            + +    LQ    +LP F   E  D            A + LE  + +G I + Y   + 
Sbjct: 245  SNKVDLKLQFGNYLLPEFEVPEGYD------------ADSYLEKLIWEG-IGRKYPNLSP 291

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            + + R+ FELN I  MKF+GYFLIV D+I +AK+N IPVGPGRGS AGS+ AYAL IT++
Sbjct: 292  EIKDRVVFELNTIKNMKFAGYFLIVQDYINYAKRNGIPVGPGRGSAAGSIVAYALGITNV 351

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            +PL+ +LLFERFLNPDR  MPD D DFC +RR+EVI Y++ +YG E+V QIITF SL AK
Sbjct: 352  EPLQHNLLFERFLNPDRKDMPDIDTDFCVERREEVINYIRRRYGEEKVGQIITFNSLAAK 411

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
            AAL+DV R L +P+ + + + K  PN     ++ +A+   S  +     D    ++  I+
Sbjct: 412  AALKDVARVLNLPFGEANEMTKAFPNKLGMSIA-EALTTSSELKNFSEKDDINHKIFAIA 470

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIK 570
            Q+LEG YR    HAAG+VI   PL ++VP+      + P     VTQ++   +E  GLIK
Sbjct: 471  QRLEGNYRQPGRHAAGVVISPYPLEEVVPLSTVAEKERPGSRSIVTQYDKNNLESIGLIK 530

Query: 571  FDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             D LGLK LT L  ++  +  +RGV++DL  IP++D  TY LL    TLGIFQLES+G+ 
Sbjct: 531  MDILGLKNLTTLDYAIKLIERRRGVRIDLDEIPYNDANTYALLRKANTLGIFQLESTGIT 590

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQG 687
              +   Q +  ++I+AL++LYRPGP+   ++  Y +RK+G++++   HP  +P+LKET G
Sbjct: 591  DLVAKSQVNNFDEIVALIALYRPGPMGEGMLDEYLDRKSGRKQVTYPHPSCEPILKETFG 650

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            V +YQEQVM I++++ G+S+ ++DVLR+AM KK  + M+K K +F+ GA K GI + +A 
Sbjct: 651  VPVYQEQVMSISRVVGGFSVGDSDVLRKAMAKKKADLMEKLKYQFVEGAVKQGIQEKVAK 710

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
            + FE L +F  YGFNKSH+ AYA+I+YQTA++K +Y +E+L A +  +      I K+  
Sbjct: 711  DFFEQLERFGGYGFNKSHSVAYAIITYQTAYLKANYTIEYLTALLASDHGKTTDIVKYIN 770

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP--FDS 864
            +AR+  I+I+ P V+     F V D+  I + L+A+KGVG T A  I+EA  DK   F +
Sbjct: 771  NAREMGIRILNPDVSESQASFNVIDDATIRFGLSAMKGVGETAANSIIEAR-DKAGNFKT 829

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            L+DF   +D++ +N++V E+L+ AGALD FGY+R  L +S+D+I  +AQ  E+ RTN+ +
Sbjct: 830  LQDFALNIDTRLINKKVFEALIQAGALDSFGYTRKCLFESVDSILTFAQR-EQERTNEGQ 888

Query: 925  -NIFAHEKGTFSDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
             ++F   + +F+  + L K ++E     +   E+ + G Y SGHPLD Y+  L+ +    
Sbjct: 889  FSLFGVGESSFT--LNLPKDALEWEIDEKLRREKAIAGLYLSGHPLDKYEKQLKSLRTIP 946

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             E+      G+ + +A ++ SK  K +++          +   E E   F
Sbjct: 947  IEKFDNLKSGSKVEVAGIISSKNIKLSKRNEEFANFKLEDRTGEIECVAF 996


>gi|118443745|ref|YP_877379.1| DNA polymerase III DnaE [Clostridium novyi NT]
 gi|118134201|gb|ABK61245.1| DNA polimerase III, alpha chain [Clostridium novyi NT]
          Length = 1167

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/1068 (36%), Positives = 615/1068 (57%), Gaps = 62/1068 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL  H+ YSLL+G+  +  ++++       ++AITD   +F  ++F +KA  AG
Sbjct: 2    KGQKFVHLHTHTEYSLLDGSGKIGGLIERAKELGMDSLAITDHGTMFGCVDFYKKAKEAG 61

Query: 67   IQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            I+PIIG ++ +  +  N+K  ++          +VLLV    GY+ L+++VS+   +D  
Sbjct: 62   IKPIIGSEIYVASKSMNIKRNDRENKNH----HLVLLVKNEIGYKNLMKIVSKA-AIDGF 116

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R+   +L+E  +EGLI L+   +G +       + + A +  L +K +F D  Y+ 
Sbjct: 117  YYKPRVDHEYLRE-HSEGLIALSACLAGEVSYNLLNGTKEKAREVALFYKDIFKDGFYLE 175

Query: 186  LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            LQ H G D+       +++L+   ++PLVATN+  ++ +ED ++HDVL+ +     +   
Sbjct: 176  LQYH-GIDKQLRVNEMLIELSRELDIPLVATNDVHYIKKEDAKSHDVLLCIQTGKTLDDT 234

Query: 244  DRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            DR R  P + YLK+  EM   FS +PEALENTV+IA  C+F    H   LP F   E  D
Sbjct: 235  DRMRYEPQNFYLKSPEEMYDTFSYVPEALENTVKIAEECNFDYVFHESKLPNFPLPESKD 294

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               E   EL  K   GL+VR  +          + ++RL++EL VI +M +  YFLIV D
Sbjct: 295  -HFEYMKELCYK---GLKVRYPE-------ITPELKERLEYELGVIKQMGYVDYFLIVWD 343

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            F +++ +  I  GPGRGS AGS+ AY L IT IDP++++L+FERFLNP+R+SMPD D DF
Sbjct: 344  FFRFSHEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDF 403

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  KYG + V+QI+TFG++  +A +RDVGRA+   Y++VDR+ K+IP  
Sbjct: 404  CYERRGEVIDYVVEKYGKDNVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTV 463

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+  +   +EA   D  V  L+++++ LEGL RH STHAAG+VI  +PL   
Sbjct: 464  LGITID-KALEMNPELKEAYDIDSRVKELIDVARDLEGLPRHTSTHAAGVVIASQPLVNY 522

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
            VP+ ++   +  VTQF M  +E+ GL+K DFLGL+TLT+++ ++D + ++ G ++DL  I
Sbjct: 523  VPLSKN--EEAIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIDLVKKKTGTEIDLDKI 580

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             F+D   Y +L    T+G+FQLES+GM   ++ ++P+ +EDIIA +SLYRPGP+  I  Y
Sbjct: 581  NFEDENVYAMLGKGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAEIPKY 640

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               KN  + I  + P ++P+L  T GV++YQEQVMQI + L+GYS+  +D++RRAM KK 
Sbjct: 641  IKNKNNPKDIEYLTPKLEPILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKK 700

Query: 722  KEEMDKQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             + M+++++ FI G              +NGIS+ +A  I++ +  FA Y FNKSHAAAY
Sbjct: 701  HKVMEEERKNFIYGIEDEKGNVIVPGCLRNGISEEVANKIYDQMMDFASYAFNKSHAAAY 760

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            AV++Y TA++  +YP EF+AA +     N +K+  + + A+Q  I+++PP +N     F 
Sbjct: 761  AVVAYYTAYLVYYYPTEFMAAILNSVRGNSDKVAAYIRAAKQMEIEVLPPKINKSFGKFT 820

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V + +I + L+AIK VG     +I +   +K  F+S  DFC+++ S  +N+R++ESLV A
Sbjct: 821  VQNGKIRFGLSAIKNVGENVVDNIAKVREEKGEFNSFVDFCNKISSGSINKRMVESLVKA 880

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            GA DCFG  R Q+L   + I        K   +   ++F      F D +I        +
Sbjct: 881  GAFDCFGIYRSQILAVYEKIIDSVVNQRKKNIDGQMSLFGSFDDEFKDTEIKYPAIDEFD 940

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILR----------------------KMGIKGYEE 985
               +   E+ + G Y +GHPL+ Y+ +L+                      ++ +   E+
Sbjct: 941  KKSKLAMEKEMTGLYLTGHPLEDYEEVLKNRTSAKTTDIIVDESLEEELIDEVTLHIEEQ 1000

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +     G+ + +  ++ +  +K TR  S + ++T  +     E   FP
Sbjct: 1001 NSKIKDGDKVIIGGLITNVTRKITRTNSMMAFITLEDLYSSIEVIIFP 1048


>gi|89894058|ref|YP_517545.1| hypothetical protein DSY1312 [Desulfitobacterium hafniense Y51]
 gi|89333506|dbj|BAE83101.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1190

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/1047 (38%), Positives = 608/1047 (58%), Gaps = 50/1047 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YSLL+GA  +  ++ K      P++AITD   ++  ++F +    AGI+P
Sbjct: 2    GFVHLHVHTEYSLLDGAARIEKLVKKAVELGMPSVAITDHGVMYGIIDFYKACKKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +      + T +          +VLL    EGY+ LI+LVS M  ++      
Sbjct: 62   IIGCEVYVAPH---RRTEKVPGRDDNNRHLVLLAENEEGYKNLIKLVS-MAHIEGFYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L++  + GLI L+   +G +      N  + A +  L ++++FG    ++ +Q 
Sbjct: 118  RVDKDILRK-HSRGLIALSACLAGEVSEYLLNNQLETAVESALEYEEIFGKGNFFLEVQD 176

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ R  + + ++     +P+VATN+  ++++ED    DVL+ +     ++   R  
Sbjct: 177  HGLEEQQRVNTGMFEVQRRTGIPMVATNDVHYVNKEDAFIQDVLICIQTGKNLTDASRMS 236

Query: 248  VTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + + + LK+ +EM  +F + PE LENT  IA RC    +     LP F   E   +   
Sbjct: 237  FSSEEFFLKSEAEMNLLFGEHPEILENTARIAERCQVDFKFGDNYLPVFEVPEGYTL--- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  LR K      +              + ++RLD+EL VIA+  FSGYFLIVADF Q+
Sbjct: 294  -DTYLRKKCYEAFPLFYPN-------QRTEEKERLDYELGVIAQTGFSGYFLIVADFCQY 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++N I VGPGRGS A S+ AY + IT ++P++  LLFERFLNP+R+SMPD DIDF  D 
Sbjct: 346  ARQNGIAVGPGRGSAAASMVAYLMGITTVEPMQHDLLFERFLNPERISMPDIDIDFDPDG 405

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+ VI YV  KYG ++V QIITFG++ AKAA+RDVGR L +P ++VD++ K IP+D    
Sbjct: 406  RERVINYVMEKYGADKVCQIITFGTMGAKAAIRDVGRVLGIPLARVDKVAKAIPSDLGMT 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+A      +    D  + +L EI++ LEG+ RHASTHAAG+VI    L   +P+ 
Sbjct: 466  LE-KALAVSPDLVKLLEEDGEIKKLYEIARSLEGMPRHASTHAAGVVIAKDALDTYIPLQ 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
            R       +TQF MK +E+ GL+K DFLGL+ LT++Q++L  +   RG  +DL  +P DD
Sbjct: 525  RTSDGGFTMTQFPMKTVEEVGLLKMDFLGLRNLTIIQETLKQIEGNRGEVLDLQSLPLDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T+ +L+   + G+FQLES GMR  L+ ++P C EDIIA+V+L+RPGP++ I  +  RK
Sbjct: 585  KATFDMLSLGNSTGVFQLESGGMRNVLKELKPSCFEDIIAVVALFRPGPMEQIPEFIRRK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G   +  +HPL++P+L+ T GVI+YQEQVMQIA+ L+GYSL  AD+LRRAMGKK KE M
Sbjct: 645  HGG-NVSYLHPLLEPILRSTYGVIVYQEQVMQIARDLAGYSLGRADLLRRAMGKKKKEIM 703

Query: 726  DKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            +++++ F            I GA K G+++  A  IF+L+AKFA+YGFNK HA AYAVIS
Sbjct: 704  EEERQSFIYGLQSPSGEEIIPGALKLGLTEKEAAEIFDLMAKFAEYGFNKGHATAYAVIS 763

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K +YP+EF AA ++  M + +K+  +  +ARQ  I+I+PP V    V F +   
Sbjct: 764  YQTAYLKANYPLEFNAALISTVMSSADKVSFYIHEARQSGIEILPPDVQYSQVGFSIEGR 823

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I + L AI+ VG      I+EA  +  F+SL DFC RVD+K LN+RVLESL+ AGA   
Sbjct: 824  GIRFGLGAIRNVGVNVVEKIIEARQEGLFESLYDFCIRVDAKVLNKRVLESLLKAGAFSL 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVR 951
                R Q L +LD+I + AQ  ++++ +   ++F      F D +   +E   VE  S R
Sbjct: 884  L-CKRAQGLLALDSILEVAQQRQRDKESGQISLF-----DFGDNLDEGIELPDVEEYSPR 937

Query: 952  --FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN---NIRLAAMVVSKQQ 1006
                 E+  LG Y SGHPL+   P L+       E+ +  + G+    + L  +V   + 
Sbjct: 938  ELLTMEKEYLGLYLSGHPLESVLPKLKN---AVSEDILTCLEGDEEKKVILGGIVTGYRT 994

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              T++G  +      +     +   FP
Sbjct: 995  TVTKRGEMMASFVLEDLTGTIDVLVFP 1021


>gi|326563512|gb|EGE13771.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis 12P80B1]
          Length = 1240

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1033 (37%), Positives = 580/1033 (56%), Gaps = 93/1033 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    A I+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIDASIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY----LLDQG 125
            IIG ++ +    +       K       S++L   +  GYQ L+ L+S  Y    + + G
Sbjct: 62   IIGAEVVVGEHSD-------KDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 126  K---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT  S   I +    ++   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILTHRSE--IAQPLLSHNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYD-RYRESQVVQLA-------------YTHELPLVATNNSLFLSEEDYEAH 228
            Y+ ++R +  D ++ ES ++Q A             + H  P   TN+       D++AH
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASP-TETNDKNNTVSTDFDAH 231

Query: 229  DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            +  + +A+   ++   RPR  T   Y K++ +M  +F+DLP+A+ENT  +A RC+  + +
Sbjct: 232  EARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNVTITL 291

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD----------- 336
               +LP F   + + I    E   +  +  GL  RL      K Y  ++           
Sbjct: 292  GINVLPDFPIPKGETI----ETFFKKVSADGLNRRLE-----KLYPVEERGDDWDQVRKP 342

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
            Y +RLD+EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+D
Sbjct: 343  YDERLDYELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLD 402

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            PL + LLFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A
Sbjct: 403  PLSYDLLFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARA 462

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------R 510
             +RDV R    P+   DR+ K+IP  P   + L+   D     +  L +P          
Sbjct: 463  VVRDVTRVQGKPFGLGDRISKMIPKTPG--IKLEDAFDQEPQLKELLTNPDAPDHELALE 520

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            + E+++KLEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+K
Sbjct: 521  IWEMAKKLEGLTRNVGKHAGGVLIAPNRISDFSAIYCDGEGH-PVSQYDKDDVEAVGLVK 579

Query: 571  FDFLGLKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETY-HLLTTKGTLGIFQLE 624
            FDFLGL+ LT+LQ ++D +     AQ    +DL  +P DD + Y  +L    T  +FQLE
Sbjct: 580  FDFLGLRNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLE 639

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----L 677
            SSGM++ L  ++P  IED+IA+ +LYRPGP+++ +V  + +RK+G +++   HP     L
Sbjct: 640  SSGMKKYLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHEL 699

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            + P L+ T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA 
Sbjct: 700  LQPPLESTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAI 759

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            +  I   +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD
Sbjct: 760  EQNIDGGLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMD 819

Query: 798  NVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIME 855
            + +++     D R  F + I+PPSVN     F V D + I Y L A+KGVG      I+ 
Sbjct: 820  DTDQVVFLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVA 879

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL----------------DCFGYSRM 899
            A  D  F  L DFC+RVD KK+ +R LE+L+ AG                  DC    R 
Sbjct: 880  ARKDGAFKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRR 939

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
             L + L      A    +N+     ++F     +      LE    +    R   EQ  L
Sbjct: 940  GLWRQLPEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDVYWQPQD-RLRYEQATL 998

Query: 960  GFYFSGHPLDVYK 972
            G Y +GHPLD Y+
Sbjct: 999  GLYLTGHPLDEYR 1011


>gi|253682356|ref|ZP_04863153.1| DNA polymerase III subunit alpha [Clostridium botulinum D str.
           1873]
 gi|253562068|gb|EES91520.1| DNA polymerase III subunit alpha [Clostridium botulinum D str.
           1873]
          Length = 1166

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/988 (37%), Positives = 580/988 (58%), Gaps = 45/988 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +FVHL  H+ YSLL+G+  +  ++ +       ++AITD   +F  ++F +KA  AGI+P
Sbjct: 5   NFVHLHTHTEYSLLDGSGKIGGLISRAKELGMKSLAITDHGTMFGCVDFYKKAKDAGIKP 64

Query: 70  IIGCQLDIDMQD----NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           IIGC++ +         L   N+          +VLLV   +GY+ L+++VS+  + +  
Sbjct: 65  IIGCEIYVSSNSMHIKRLDAENRNH-------HLVLLVKNEQGYKNLMKIVSKASI-EGF 116

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
               R+   +L+E  +EGLI L+   +G +       + + A +  L +K +F +  Y+ 
Sbjct: 117 YYKPRVDHEYLKE-HSEGLIALSACLAGEVSYNLLNGTKEKAREIALFYKDIFKEGFYIE 175

Query: 186 LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
           LQ H G D+       +V+LA   ++PLVATN+  ++ +ED ++H+VL+ +     +  +
Sbjct: 176 LQYH-GIDKQLRVNEMLVELARELDIPLVATNDVHYIKKEDAKSHEVLLCIQTGKTLDDE 234

Query: 244 DRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           DR +  P + YLK+  EM   FS + +ALENT +IA  C+F    H   LP F   E  D
Sbjct: 235 DRMKYEPQNFYLKSPEEMYETFSYVSDALENTNKIADECNFDYIFHESKLPNFPLPEGID 294

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E   EL  K   GLE+R  +          + ++RL++EL+VI  M +  YFLIV D
Sbjct: 295 -HFEYMKELCYK---GLEIRYEKVT-------DELKERLEYELDVIKEMGYVDYFLIVWD 343

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           F +++ +  I  GPGRGS AGS+ AY L IT IDP++++L+FERFLNP+R+SMPD D DF
Sbjct: 344 FFRFSHEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDF 403

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C +RR EVI YV  KYG + V+QI+TFG++  +A +RDVGRA+   Y++VDR+ K+IP  
Sbjct: 404 CYERRGEVIDYVVEKYGKDNVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTV 463

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               +  +A+  +   RE    D  +  L+++++ LEGL RH STHAAG+VI  +PL   
Sbjct: 464 LGITID-KALEMNPELREVYDKDTRIKELIDVARDLEGLPRHTSTHAAGVVIASQPLVNY 522

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
           VP+ ++   +  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + +  G+++DL  I
Sbjct: 523 VPLSKN--EEAIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIELIKKNTGIEIDLDKI 580

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            F+D   Y++L    T+G+FQLES+GM   ++ ++P+ +EDIIA +SLYRPGP+  I  Y
Sbjct: 581 NFEDENVYNMLGKGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAEIPKY 640

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              KN  + I  I P ++ +L  T GV++YQEQVMQI + L+GYS+  +D++RRAM KK 
Sbjct: 641 IKNKNNPKNIEYITPELEGILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKK 700

Query: 722 KEEMDKQKERFISGAS-----------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + M+++++ FI G             +NGIS+  A  I++ +  FA Y FNKSHAAAY 
Sbjct: 701 HKVMEEERKNFIYGIEENGKVVVPGCLRNGISEESANKIYDQMMDFASYAFNKSHAAAYG 760

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
           V++Y TA++  +YP EF+AA +     N +K+  + + A+Q +I+ +PP +N     F V
Sbjct: 761 VVAYYTAYLVHYYPTEFMAAMLNSVRGNSDKVAIYIRAAKQMDIETLPPDINKSFGKFTV 820

Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            + +I + L+AIK VG      I+++  +K  F+S  DFC+++    +N+R++ESL+ AG
Sbjct: 821 QNGKIRFGLSAIKNVGENIIDVIVKSREEKGEFNSFVDFCNKISMGSINKRMVESLIKAG 880

Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948
             D FG  R QLL   + I        K       ++F +    F   +I        N 
Sbjct: 881 VFDSFGIYRSQLLAVYEKIIDSVVSQRKKNIEGQVSLFGNFDNEFKGVEIKYPAIDEFNK 940

Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILR 976
             +   E+ + G Y +GHPL+ Y+ IL+
Sbjct: 941 KSKLAMEKEMTGLYLTGHPLEDYEEILK 968


>gi|295112106|emb|CBL28856.1| DNA-directed DNA polymerase III (polc) [Synergistetes bacterium SGP1]
          Length = 1154

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/1053 (36%), Positives = 613/1053 (58%), Gaps = 58/1053 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA+    +  K+A    PA+A+TD   ++ A+EF +   AAG++PI
Sbjct: 5    FVHLHVHTEYSLLDGAIRTKQLAAKVADWSVPAVAMTDHGVMYGAVEFYENCRAAGVKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +D   +     +GK        ++LL    EGY+ L++LVS +   D      R
Sbjct: 65   LGCEIYVDPDGHRSREKKGKNNH-----LILLAENEEGYRNLVKLVS-IANTDGFYYKPR 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV--NLQR 188
            I    L      G+I  +   +G + +         A KR L ++ + G   Y    +  
Sbjct: 119  IDHDLLASC-ARGIIASSACLAGEVPQLVLQGREDEAAKRALLYQDIMGKGNYFLEIMSN 177

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                       ++++A    +PL+AT+++ +L+ EDYE H +L+ +      +       
Sbjct: 178  TLPEQAVVNKALIRIAKDTGIPLIATSDAHYLNAEDYEWHKILLRINTHADDTDDAFGFS 237

Query: 249  TPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAP--ILPRFIEKECDDIQK 305
              D YL++  EM +IF +++PEAL+NTV IA RC   +++     +LP    +E   +  
Sbjct: 238  VNDFYLRSPEEMDAIFGAEVPEALDNTVAIAERCGVEMKLKTGHYMLPSLELQEGMTLDS 297

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E+E R    AGL +RL            +Y +RL++ELNVI RM FS YFLIVA  IQ
Sbjct: 298  HLEDEAR----AGLRMRLNADT-----PPAEYAERLEYELNVITRMGFSAYFLIVAGIIQ 348

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
             AK+  IP+GPGRGS AGS+ A++L IT++DPL+++LLFERFLNP+R+SMPD D D    
Sbjct: 349  AAKERGIPIGPGRGSAAGSLVAWSLRITELDPLKYNLLFERFLNPERISMPDIDTDVSDR 408

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             R+++++++  +YG +RV+QIITFG ++++ A++DVGRA+ M Y+ +DR+ KLIP D A 
Sbjct: 409  GREQLLKHIVERYGSDRVSQIITFGRMKSRQAVKDVGRAVGMEYALMDRVAKLIPAD-AR 467

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+       E    DP +  +L  ++ +EGL RHAS HAAG+VI   P++ LVP+
Sbjct: 468  SIR-EALERTPELTELAEEDPRIKNVLRTAEHIEGLARHASQHAAGVVITPVPITDLVPI 526

Query: 546  YRDVRSDLP------------VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
             R ++S  P            VTQF M+ +EK GL+K DFLGL+TL++L+++++ +   G
Sbjct: 527  RR-IKSTAPSAPDGELDVTQTVTQFTMEPVEKLGLVKMDFLGLQTLSILEEAVENIRLNG 585

Query: 594  VK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                DL  +P DD  TY LL    T+G+FQLES G+R  L  ++ DC +D++A +++YRP
Sbjct: 586  KNPPDLLSLPMDDPATYKLLQEADTMGVFQLESDGIRGMLRKLRIDCFDDLVAALAMYRP 645

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+D+ +V  Y   K+G+ K+   HPL++ +LK+T GVI+YQEQVMQ A +L+GY+L EA
Sbjct: 646  GPLDSGMVDQYIKCKHGQAKLEYPHPLLEDVLKDTYGVILYQEQVMQSASVLAGYTLGEA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  E M +Q+ +F+ GA + GI +  A  IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DLLRRAMGKKKVEVMQEQRAKFLDGARQKGIDEKTASGIFDLIEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKI-KKFCQDARQFNIQIMPPSVNTPCVDFK 829
            ++SYQTA++K +Y  EF+A+ ++ +M + + +   + ++ RQ  I ++PP VN+    F 
Sbjct: 766  LVSYQTAYLKANYKAEFMASYLSSQMKSKKDVLGHYVREVRQSGISVLPPDVNSSMESFT 825

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
               + I + L A+  VG      I++A  + PF SL DF  RVD   +NR ++E+L+ AG
Sbjct: 826  AVGDVIRFGLGAVLRVGHNAVEAIVKAREEGPFKSLWDFLRRVDLHDMNRAMIENLIKAG 885

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---AHEKGT--FSDKITLEKFS 944
            A D    +R +L+ +L +    AQ +         ++F     + G+    D   +E++ 
Sbjct: 886  AFDEITPNRARLVAALPDFILAAQKMAAG--GDQLSLFDAIGDDSGSDPEPDLPDVEEYG 943

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI---RGNNI-RLAAM 1000
            + +   + + E+ V G Y SGHP D  +  +RK        S+A +   RG    ++  +
Sbjct: 944  IYD---KLDYEKEVTGLYISGHPFDSCEAQVRKYA----NCSIADLPLWRGKTAPKVGGL 996

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++S  +K T+KG  +G +   +         FP
Sbjct: 997  ILSVSEKTTKKGDLMGVLLLEDSESSVSMVAFP 1029


>gi|119487742|ref|ZP_01621251.1| DNA polymerase III subunit alpha [Lyngbya sp. PCC 8106]
 gi|119455575|gb|EAW36712.1| DNA polymerase III subunit alpha [Lyngbya sp. PCC 8106]
          Length = 1206

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/1108 (36%), Positives = 624/1108 (56%), Gaps = 119/1108 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  L  ++++    + PAIA+TD   ++ A+E  ++  + GI+P
Sbjct: 2    SFVGLHIHSDYSLLDGASQLPQLIERAVELKMPAIAVTDHGVMYGAIELIKQCRSKGIKP 61

Query: 70   IIGCQLDI------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            IIG ++ +        Q  LK  +Q           V+L    +GY+ L++L +  +L  
Sbjct: 62   IIGNEMYVINADVTQQQGRLKKYHQ-----------VVLAKNTKGYKNLVKLTTISHL-- 108

Query: 124  QGKQS----VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
            QG Q      R C++  L +   EGLI+ +    G + +A     S VA K    ++ +F
Sbjct: 109  QGFQGKGIFARPCINKELLKQYHEGLIVTSACLGGELPQAILQGRSDVARKVAKWYQDVF 168

Query: 179  GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            G+  Y+ +Q H    DR    ++V++A   ++ ++ATN+S F+S  D EAHD L+ +   
Sbjct: 169  GEDYYIEIQDHGSPEDRIVNVELVKIAREFDIKIIATNDSHFISCYDVEAHDALLCINTQ 228

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCSFILQVHA-- 289
             ++++  R R +   YLK+  EM  +F D LP     EA+ NT+E++ +      +    
Sbjct: 229  KLITEDKRMRYSGTEYLKSAEEMAQLFRDHLPDDVIREAIANTIEVSEKIEPYTGILGES 288

Query: 290  -----PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRL 341
                 PI P              +  L      GL  RL Q  I     ++    YR+RL
Sbjct: 289  RIPDYPIPPNHTS----------DTYLEEVTWKGLIERL-QDQIKIQTRSEIPPVYRERL 337

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            ++EL ++ +M FS YFL+V D+I++A+ + IPVGPGRGS AGS+ AY+L IT+IDP+   
Sbjct: 338  EYELKMMQKMGFSTYFLVVWDYIKYARDHQIPVGPGRGSAAGSLVAYSLGITNIDPVHHG 397

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R SMPD D DFC  RRDE+IRYV N+YG ++VAQIITF  + +KA L+DV
Sbjct: 398  LLFERFLNPERKSMPDIDTDFCIARRDEMIRYVTNQYGEDKVAQIITFNRMTSKAVLKDV 457

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQA-IADDS---RFREA--------------RL 503
             R L +PYS+ D++ KLIP     P  L+  I+DD+    F+ A               +
Sbjct: 458  ARVLGIPYSKSDQMAKLIPVSRGKPAKLKVMISDDTPSPEFKSAYETEDVPIKNDLGNEV 517

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563
                V + ++++ ++EG  +    HAAG+VI  +PL ++VP+ R+    + +TQ+ M+ I
Sbjct: 518  GTIPVRQWIDMAIRIEGTNKTFGVHAAGVVISKQPLDEIVPLQRNNDGAV-ITQYFMEDI 576

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--------------------VKVDLSLIPF 603
            E  GL+K DFLGLK LT++Q+ ++ + +                       K  +  +P 
Sbjct: 577  EALGLLKMDFLGLKNLTIIQRVVELIEENHHFKMIPDQLPFDERKACQILAKGKIKKLPE 636

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            D  +TY LL      G+FQLESSGMRQ +  ++P  IEDI ++++LYRPGP+D  ++  +
Sbjct: 637  DIQKTYKLLERGDLEGVFQLESSGMRQIVRDLKPSNIEDISSILALYRPGPLDAGLIPKF 696

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             +RK+ +  I   HPL++ +L+ET G+++YQEQ+M++AQ L+GYSL +AD+LRRAMGKK 
Sbjct: 697  IDRKHKRVPIEYEHPLLESILQETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKK 756

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              EM KQ+E FI G++KNG+SK IA ++F+ +  FA+Y FNKSH+ AY  ++YQTA++K 
Sbjct: 757  LSEMQKQREAFIDGSTKNGVSKQIAEHLFDQMLAFAEYCFNKSHSMAYGFVTYQTAYLKA 816

Query: 782  HYPVEFLAASMTLEMDNVEKIKKF---CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +YPVE++AA +T   DN +K++K+   CQ  R   I+++ P VN   VDF   D  I + 
Sbjct: 817  NYPVEYMAALLTENSDNTDKVQKYIDSCQ--RSLKIKVVSPDVNHSNVDFTPSDGEIIFG 874

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L+AIK VG T   +I+ A  +   F  L DFCSRV    +N R LESL+  GALD    +
Sbjct: 875  LSAIKNVGETAIENILAARKEGGKFSDLPDFCSRVSLHIVNSRALESLIKCGALDSLHQN 934

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHEKGTFSDKITLEKFSVENSSVRF 952
            R Q ++ L+ +  +AQ   K+R     +IF        K T        K    ++  + 
Sbjct: 935  RKQAIEYLNFLIPWAQGKAKDREIGQSSIFDLLGDTTTKSTNEGAPKPPKTDDFSTPEKL 994

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE-------ESVATIRGNNIRLAAMVVSKQ 1005
            + E+ +LGFY S HPL        +  IK Y        + +A  +G  +++  ++V  +
Sbjct: 995  QFEKELLGFYVSEHPL--------QSVIKAYPVEDAITLQDLAEHKGKKVKVFLVIVEVK 1046

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  T+KG  + ++   + + + EA  FP
Sbjct: 1047 RHVTKKGETMAFLKVEDMSGQAEAIVFP 1074


>gi|229062288|ref|ZP_04199609.1| DNA polymerase III subunit alpha [Bacillus cereus AH603]
 gi|228717016|gb|EEL68697.1| DNA polymerase III subunit alpha [Bacillus cereus AH603]
          Length = 1107

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/1032 (36%), Positives = 605/1032 (58%), Gaps = 59/1032 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPII
Sbjct: 1    MHLQCQTVFSLLKSACKIDELVIRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPII 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   I
Sbjct: 61   GLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               WL     +GLI ++ G  G I++    +    AE+   T++ +F +  Y++LQ H  
Sbjct: 106  PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVAHTYQNMFSN-FYISLQHHAI 163

Query: 192  YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  
Sbjct: 164  QDELLLQEKLPEFINKVNVPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRMKT 223

Query: 251  D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D +YLK+  EM ++FS   EA++NT+ IA RC   +  H   LP+F       +   E N
Sbjct: 224  DQYYLKSSDEMGALFSHAEEAVQNTITIAERCQVEIPFHVNQLPKF------PVPSNETN 277

Query: 310  E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR     GL+ R        G   + +  RLD ELNVI+RM FS YFLIV DF+++A
Sbjct: 278  DTYLRRVCEEGLQKRY-------GTPKEAHIGRLDHELNVISRMGFSDYFLIVWDFMKYA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RR
Sbjct: 331  HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYELLFERFLNPERVTLPDIDIDFPDIRR 390

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +    +D   KLIP+     +
Sbjct: 391  DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLLPRDIDIFSKLIPSKLG--I 448

Query: 488  SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V + 
Sbjct: 449  TLRDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ ++ G ++D+  +P  D
Sbjct: 508  QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVEKTGKQIDIRNLPLQD 567

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K
Sbjct: 568  EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GK +I  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +
Sbjct: 628  HGKRRIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D++++ F+ G  +NG  +T +  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +
Sbjct: 688  DQERKHFVQGCLENGYDETSSEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +
Sbjct: 748  EFMTALLSSAIGNEDKIVQYVRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G  T   ++E   +K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL
Sbjct: 808  GMATVTALLEEREEKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDGFGVSRTTLWRSL 867

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961
                +YA                       D +   K+ V+   + F      E+  LGF
Sbjct: 868  KGALEYANLARDF--------------DLGDAVPKSKY-VQGEELSFIEQLNKEKEALGF 912

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF 
Sbjct: 913  YLSSYPTAQYAELGKELEIPSLAQAMRHKKKVQ-RAIVYITSVKVIRTKKLQKMAFITFC 971

Query: 1022 EPAKEYEANFFP 1033
            +   E EA  FP
Sbjct: 972  DQNDEMEAVIFP 983


>gi|324008246|gb|EGB77465.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           57-2]
          Length = 773

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/789 (44%), Positives = 502/789 (63%), Gaps = 34/789 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
           +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59  DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFLAASMT 793
            EF+AA MT
Sbjct: 764 AEFMAAGMT 772


>gi|229013809|ref|ZP_04170937.1| DNA polymerase III subunit alpha [Bacillus mycoides DSM 2048]
 gi|229135439|ref|ZP_04264226.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST196]
 gi|229169331|ref|ZP_04297041.1| DNA polymerase III subunit alpha [Bacillus cereus AH621]
 gi|228614094|gb|EEK71209.1| DNA polymerase III subunit alpha [Bacillus cereus AH621]
 gi|228648000|gb|EEL04048.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST196]
 gi|228747478|gb|EEL97353.1| DNA polymerase III subunit alpha [Bacillus mycoides DSM 2048]
          Length = 1107

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/1032 (36%), Positives = 605/1032 (58%), Gaps = 59/1032 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPII
Sbjct: 1    MHLQCQTVFSLLKSACKIDELVIRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPII 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   I
Sbjct: 61   GLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               WL     +GLI ++ G  G I++    +    AE+   T++ +F +  Y++LQ H  
Sbjct: 106  PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVAHTYQNMFSN-FYISLQHHAI 163

Query: 192  YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  
Sbjct: 164  QDELLLQEKLPEFINKVNVPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRMKT 223

Query: 251  D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D +YLK+  EM ++FS   EA++NT+ IA RC   +  H   LP+F       +   E N
Sbjct: 224  DQYYLKSSDEMGALFSHAEEAVQNTITIAERCQVEIPFHVNQLPKF------PVPSNETN 277

Query: 310  E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR     GL+ R        G   + +  RLD ELNVI+RM FS YFLIV DF+++A
Sbjct: 278  DTYLRRVCEEGLQKRY-------GTPKEAHIGRLDHELNVISRMGFSDYFLIVWDFMKYA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RR
Sbjct: 331  HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYELLFERFLNPERVTLPDIDIDFPDIRR 390

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +    +D   KLIP+     +
Sbjct: 391  DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLLPRDIDIFSKLIPSKLG--I 448

Query: 488  SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V + 
Sbjct: 449  TLRDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ ++ G ++D+  +P  D
Sbjct: 508  QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVEKTGKQIDIRNLPLQD 567

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K
Sbjct: 568  EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GK +I  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +
Sbjct: 628  HGKRQIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D++++ F+ G  +NG  +T +  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +
Sbjct: 688  DQERKHFVQGCLENGYDETSSEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+ A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +
Sbjct: 748  EFMTALLSSAIGNEDKIVQYVRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G  T   ++E   +K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL
Sbjct: 808  GMATVTALLEEREEKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDGFGVSRTTLWRSL 867

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961
                +YA                       D +   K+ V+   + F      E+  LGF
Sbjct: 868  KGALEYANLARDF--------------DLGDAVPKSKY-VQGEELSFIEQLNKEKEALGF 912

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S +P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF 
Sbjct: 913  YLSSYPTAQYAELGKELEIPSLAQAMRHKKKVQ-RAIVYITSVKVIRTKKLQKMAFITFC 971

Query: 1022 EPAKEYEANFFP 1033
            +   E EA  FP
Sbjct: 972  DQNDEMEAVIFP 983


>gi|189502058|ref|YP_001957775.1| hypothetical protein Aasi_0650 [Candidatus Amoebophilus asiaticus
            5a2]
 gi|189497499|gb|ACE06046.1| hypothetical protein Aasi_0650 [Candidatus Amoebophilus asiaticus
            5a2]
          Length = 1148

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/1028 (37%), Positives = 603/1028 (58%), Gaps = 49/1028 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL  H+ YSLL+G   ++ +  K       A+AITD  N+F    F  +A   GI+PI
Sbjct: 4    FTHLHCHTQYSLLDGTAKIDKLFGKAKQLGMQALAITDHGNMFGVPHFVAQAKKQGIKPI 63

Query: 71   IGCQ--LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IGC+  L  DM  NLK     KT +  +    LL     GY+ +++L S +  L+     
Sbjct: 64   IGCEFYLAADMH-NLKE----KTRYHQL----LLAKNEVGYKNIVKLCS-ISFLEGYYYK 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L++  +EGLI  T   +G + +A      + AEK  L++  +FG+  Y+ LQR
Sbjct: 114  PRIDKELLKKY-SEGLIATTCCLAGEVPQAIMRKGEEEAEKVFLSWLNIFGEDYYIELQR 172

Query: 189  HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ + ++V+ + A  +++ ++ATN+  ++ ++D  A D+L+ +      +  +R R
Sbjct: 173  HGLKEQDKCNEVLLKWAQKYQVKVIATNDVHYVEQQDSLAQDILLCLQTGKDYNDPNRMR 232

Query: 248  VTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK- 305
               D + LK+  EM+++F D+P+A+ NT EI      I +++ P L R I      I + 
Sbjct: 233  FDGDQFFLKSPQEMLTLFHDIPQAVSNTQEI------IDKINTPSLERDILLPVFQIPQG 286

Query: 306  --EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               +++ LR+ A+ G + R   GAI+      D   R+++EL VI +M F GYFLIV DF
Sbjct: 287  FTSQDSYLRHLAIEGAKKRF--GAISA-----DLEARINYELGVIQQMGFPGYFLIVQDF 339

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQ AK   + VGPGRGS AGSV AY + ITDIDP+R++L FERFLNP+R+SMPD DIDF 
Sbjct: 340  IQAAKNLQVVVGPGRGSVAGSVVAYCIGITDIDPIRYNLFFERFLNPERVSMPDIDIDFD 399

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + R +VI YV +KYG  +VA IITFGS+ AK+A+RDV R L +P  + + + KL+P   
Sbjct: 400  DEGRQKVIEYVVDKYGKNQVAHIITFGSMAAKSAIRDVARVLGLPLERTNYIAKLVPEKL 459

Query: 484  A--HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                P S + + + +  ++   ++    ++L +++ LEG  RH   HAAGI+I    L  
Sbjct: 460  GITLPESFEEVLELAELKKN--SNTLEGKVLSLAETLEGSARHTGVHAAGIIIAPDDLLN 517

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
             +P+  D  SDL VTQ++   +EK G++K DFLGLKTL++++ ++  + +  G K+DL  
Sbjct: 518  HIPVKTDKNSDLLVTQYDGSIVEKVGMLKMDFLGLKTLSIIKDAIALIEKLHGTKIDLEQ 577

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD +T+ L     T+  FQ ES GMRQ L+ +QP   E++IA+ +LYRPGP+  I  
Sbjct: 578  LPLDDLKTFKLYQQGDTIATFQFESEGMRQWLKKLQPTEFEELIAMNALYRPGPMQFIPN 637

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RK+G+EKI   HPL+  +LK T G+++YQEQVMQ AQ+++GYSL  AD+LR+AMGKK
Sbjct: 638  FIARKHGQEKIDYPHPLLVDILKNTYGIMVYQEQVMQTAQIIAGYSLGGADLLRKAMGKK 697

Query: 721  IKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
              EEM KQ+E F+ GA  KN +  T A+ IFE++ KFA YGFN++H+AAY+VI+YQTA++
Sbjct: 698  QPEEMAKQREIFVQGAQEKNNLPSTKAIEIFEVMEKFAQYGFNRAHSAAYSVIAYQTAYL 757

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYS 838
            K HYP E++A+ +T   +++ KI  F ++  +  IQ++ P VN   V+F V   + I + 
Sbjct: 758  KAHYPAEYMASVLTHNQNDIGKISFFMEECIRQGIQVLGPDVNESQVNFDVTPKQGIRFG 817

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GY 896
            L AIKG G     HI+ E   +  F  +  F  RVD + +N++ LESL  +GA D F G 
Sbjct: 818  LTAIKGAGEGAVSHIIAEREKNGHFTDIFSFVERVDLRMVNKKTLESLAMSGAFDGFTGC 877

Query: 897  SRMQLLQSLDNIQ-------KYAQWVEKNRTNKHENIFAHEKG-TFSDKITLEKFSVENS 948
             R Q L + D          +Y   +++ + +  +++FA +    +  K  +      + 
Sbjct: 878  HRRQYLFAADGEHNLLVKAIQYGNQIKQEKASAQQSLFAMDDNFQYIQKPPIPTCEPYDK 937

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              +   E+ ++GFY SGHPLD ++  L      G+ +++ T +   +RLA ++     K 
Sbjct: 938  IEKLRMEKELVGFYISGHPLDQFRVELANF-CDGHTQNILTFKQKEVRLAGIITECSIKY 996

Query: 1009 TRKGSRIG 1016
             ++G   G
Sbjct: 997  NKQGRPFG 1004


>gi|291279285|ref|YP_003496120.1| DNA polymerase III subunit alpha [Deferribacter desulfuricans SSM1]
 gi|290753987|dbj|BAI80364.1| DNA polymerase III, alpha subunit [Deferribacter desulfuricans
           SSM1]
          Length = 932

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/919 (41%), Positives = 566/919 (61%), Gaps = 35/919 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL +H+ YSLL+GA+ ++ ++ K+      A+AITD   ++  ++F  +A A  I+PI
Sbjct: 5   FIHLHLHTQYSLLDGAIHISELMKKLKEHGSKAVAITDHGTMYGIVDFYTQALANDIKPI 64

Query: 71  IGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IGC++ +  D + N   + +    +     +VLL     G + L  LVS  ++ +     
Sbjct: 65  IGCEVYVAPDSRFNKNYSKKEDKSY----HLVLLAKNNAGLKNLQYLVSLGHI-EGFYYK 119

Query: 129 VRICLSWLQEIGTEGLIMLTGG-SSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
            RI    L +  ++GLI L+   +S P  +A   +    A++  L + ++FG D  Y+ +
Sbjct: 120 PRIDKELLAKY-SKGLIGLSACLASEPAQKALT-DGYAAAKESALEYYEIFGKDNYYLEI 177

Query: 187 QRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           Q +   ++Y  + + ++++    +P+VATNN  FL++EDY +H VLM + +   ++  +R
Sbjct: 178 QDNNIPEQYIVNTIFMEISRETGIPIVATNNCHFLNKEDYSSHQVLMCIQYQQTLNDPNR 237

Query: 246 -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               + + ++K+  EM   F ++ EAL NTV+IA RC+  +      LP +   E   ++
Sbjct: 238 RDSHSSELFVKSPEEMWQAFGEIEEALINTVKIAERCNVSMTFGELHLPVYDVPEGYTLK 297

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                 L + A  GL  RLA+  +    H++ Y QRL++EL +I    + GY+LIV DFI
Sbjct: 298 ----TYLEHIAKEGLHKRLAKVPLE--LHSK-YYQRLEYELKIIHEKGYDGYYLIVWDFI 350

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +A+KN IPVGPGRGSGAGS+ AYA+ ITDIDP+++ LLFERFLNP+R SMPDFDID C 
Sbjct: 351 NFARKNKIPVGPGRGSGAGSLVAYAVGITDIDPIKYKLLFERFLNPERKSMPDFDIDICM 410

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           +RR+EVI YV+NKYGH+RVAQIITFG L A+  +RDVGR L++P   VD++ K+IP  P 
Sbjct: 411 NRREEVIDYVRNKYGHDRVAQIITFGKLLARGVIRDVGRVLEIPLKTVDKIAKMIPAKPD 470

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             +  +A+  D   +    +      LLE + KLEGL R+A  HAAG+VI D+PL + VP
Sbjct: 471 LTLK-KALEMDPELKPNIESIEKGKELLEHALKLEGLLRNAGMHAAGVVISDKPLVEYVP 529

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
           + +  ++D  VTQF    +EK GL+K DFLGLK LT++  +   + + +    D+S IP 
Sbjct: 530 LCKG-QNDEVVTQFEKDTLEKVGLVKLDFLGLKNLTVIDYASKLIRKSKDPNFDISAIPL 588

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
           DD +T+ LL++  T G+FQLESSGM+  L+ ++P   EDII LV+LYRPGPI + ++  +
Sbjct: 589 DDKKTFELLSSGETTGVFQLESSGMKNLLKKLKPTTFEDIIVLVALYRPGPIGSGILDDF 648

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK+G +++    P ++ +LKET G+I+YQEQVMQIAQ+++GYSL  AD+LRRAMGKK 
Sbjct: 649 LKRKHGLQEVTYPLPELEEILKETYGIIVYQEQVMQIAQIVAGYSLGSADLLRRAMGKKK 708

Query: 722 KEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            EEM K ++ F        I GA K G  + IA  IF+L+AKFA+YGFNKSH+AAYA++S
Sbjct: 709 PEEMAKHRKIFLYGDEKLGIEGAVKRGFDEKIASEIFDLMAKFAEYGFNKSHSAAYAMVS 768

Query: 774 YQTAWMKTHYPVEFLAASMT--LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
           YQTA++K HYPVE++A+ +T   E     +I++   +     I ++ P +N    D  V 
Sbjct: 769 YQTAYLKAHYPVEYMASIITQEFEFKYNYRIEELIAECNNMGITVLLPDINKSEKDTVVE 828

Query: 832 DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            N I   L AI        + I E + +  F +L+DFC R+D   +N+  + S +  GA+
Sbjct: 829 RNLIKVGLKAIHDNDEIIDKIIFERNRNGEFKNLKDFCKRIDLTIVNKNAISSFIKYGAM 888

Query: 892 DCFGYSRMQLLQSLDNIQK 910
           D FG SR QLLQ L++  K
Sbjct: 889 DSFGKSRKQLLQVLNDTIK 907


>gi|225018880|ref|ZP_03708072.1| hypothetical protein CLOSTMETH_02830 [Clostridium methylpentosum DSM
            5476]
 gi|224948350|gb|EEG29559.1| hypothetical protein CLOSTMETH_02830 [Clostridium methylpentosum DSM
            5476]
          Length = 1155

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/1054 (37%), Positives = 601/1054 (57%), Gaps = 62/1054 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            EK   FVHL +H+ +SLL+GA  +  +        Q A+AITD  N+F  ++F     A 
Sbjct: 21   EKKMGFVHLHLHTEFSLLDGACRIKELAAYAKKLGQDALAITDHGNMFGTIDFYSACKAE 80

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQ 124
            GI+PIIGC++ +  +      ++      T P+ +VLL     GY+ LI+LVS  Y+  +
Sbjct: 81   GIKPIIGCEVYVAPRTRFDKVHR----IDTSPNHLVLLCKNETGYRNLIKLVSAGYI--E 134

Query: 125  GKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAF----FFNSSQVAEKRLLTFKKLFG 179
            G  S  RI  + LQE  +EGLI L+   +G I RA     +  + Q+AE     ++   G
Sbjct: 135  GFYSRPRIDHNLLQE-HSEGLIALSACLAGEIPRALTAGDYGRAKQIAE----FYRDTMG 189

Query: 180  -DRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
             D  ++ LQ H G    R    Q+V+LA    + LVATN+  ++  ED +   VL+ +  
Sbjct: 190  PDNYFIELQDH-GIKEQRAILPQLVKLAQQVGVGLVATNDVHYIRREDSKTQKVLLCIQT 248

Query: 237  STVVSQK---DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
               + ++   + P  T + YLK+  EM S+F     A+ENT  IA RC+   +     LP
Sbjct: 249  GKTLDEELAIEFP--TQEFYLKSEEEMQSLFGSFEGAIENTARIAERCNLEFEFGVTKLP 306

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD---FELNVIAR 350
             F          E  N   NK      +RL    + K Y  Q   + LD   +E++VI  
Sbjct: 307  HF----------EPPNGEDNKE---FFLRLCHDGLKKYYGEQPDPKILDRFHYEIDVIDS 353

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F  Y+LIV DF+++AK++ IPVGPGRGSGAGS+ AY + IT IDP++++LLFERFLNP
Sbjct: 354  MGFVDYYLIVYDFVRYAKEHGIPVGPGRGSGAGSIIAYCIGITGIDPIKYNLLFERFLNP 413

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFDIDFC +RR EV+ YV  KYG + VAQI+TFG+L A+ A+RDVGR + MPY 
Sbjct: 414  ERVSMPDFDIDFCYERRPEVLDYVIRKYGADHVAQIVTFGTLAARGAIRDVGRVMGMPYD 473

Query: 471  QVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
             VD++ K +P  P   +++  A+      +    +DP V  L++ ++KLEG+ R+ STHA
Sbjct: 474  VVDKIAKQVPIHPGITITIDSALKKSPELKAMADSDPQVRELIDTARKLEGMPRNTSTHA 533

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            AG+VI D+P++  VP+ ++  S   VTQ+ M  I   GL+K DFLGL+ LT++       
Sbjct: 534  AGVVITDKPVTDYVPLSKNDES--IVTQYTMNTIADLGLLKMDFLGLRNLTVISD----- 586

Query: 590  AQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            A+RGV+       ++ IP DD ET+ +L+   + G+FQ ES+GMR+ L  M+PDC+ED+I
Sbjct: 587  AERGVRRFEPEFAINKIPLDDKETFDMLSQGQSDGVFQFESAGMRKMLSRMKPDCLEDLI 646

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            A++SLYRPGP   I  +   +   E+I      +  +L  T GVI+YQEQVMQI + L+G
Sbjct: 647  AVLSLYRPGPAQFIDAFIENRIHPERITYRDERLRHILDVTYGVIVYQEQVMQIFRELAG 706

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YS   ADV+RRA+ KK    M++++ +FI GA  NG+S+  A  IF  ++ FA Y FNKS
Sbjct: 707  YSYGRADVVRRAISKKKAGVMEQERIKFIEGAVANGLSERDAEAIFNDMSSFASYAFNKS 766

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAAAY+++SYQTA++K HYP E++AA +   + + +K+  +  + R+ +IQ++PP +N  
Sbjct: 767  HAAAYSLVSYQTAYLKCHYPREYMAALLNSVIYSTDKVISYIGECRKQHIQVLPPDINRS 826

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLE 883
             + F V D  I + L A+K VG      I+E   A+  F+SL +F  R+ +++LN+  + 
Sbjct: 827  QIGFTVSDGSIRFGLLAVKKVGKGVIERIVEEREANGAFESLYNFVERMHNRELNKAAIL 886

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            + +  GA D F  +R Q+ +S + I +     +++  N   N+F    GT  +K +  + 
Sbjct: 887  AFIQCGAFDSFEENRRQMAESYERIVESVNSSKRSNINGQINLFETVTGT--EKFSYPEL 944

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY----EESVATIRGNNIRLAA 999
                +      E++  G Y S HPLD +   L+   I       +E  +   G +  L A
Sbjct: 945  EEYTTDELMAMERQTTGLYISSHPLDRFDKQLKGRRIDQISEIQQEESSYCDGAHAELGA 1004

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +V S ++ +T+ G+ + +    +     EA  FP
Sbjct: 1005 IVASVKRIQTKGGALMAFAELEDRTGSIEAVVFP 1038


>gi|326576004|gb|EGE25927.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis CO72]
          Length = 1240

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1028 (38%), Positives = 578/1028 (56%), Gaps = 83/1028 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    A I+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIDASIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY----LLDQG 125
            IIG ++ +    +       K       S++L   +  GYQ L+ L+S  Y    + + G
Sbjct: 62   IIGAEVVVGEHSD-------KDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 126  K---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT  S   I +    ++   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILTHRSE--IAQPLLSHNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYD-RYRESQVVQLA-------------YTHELPLVATNNSLFLSEEDYEAH 228
            Y+ ++R +  D ++ ES ++Q A             + H  P   TN+       D++AH
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASP-TETNDKNNTVSTDFDAH 231

Query: 229  DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            +  + +A+   ++   RPR  T   Y K++ +M  +F+DLP+A+ENT  +A RC+  + +
Sbjct: 232  EARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNVTITL 291

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRL 341
               +LP F   + + I    E   +  +  GL  RL       Q         + Y +RL
Sbjct: 292  GINVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERL 347

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            D+EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + 
Sbjct: 348  DYELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYD 407

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV
Sbjct: 408  LLFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDV 467

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEIS 515
             R    P+   DR+ K+IP  P   + L+   D     +  L +P          + E++
Sbjct: 468  TRVQGKPFGLGDRISKMIPKTPG--IKLEDAFDQEPQLKELLTNPDAPDHELALEIWEMA 525

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            +KLEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLG
Sbjct: 526  KKLEGLTRNVGKHAGGVLIAPNRISDFSAIYCDGEGH-PVSQYDKDDVEAVGLVKFDFLG 584

Query: 576  LKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMR 629
            L+ LT+LQ ++D +     AQ    +DL  +P DD + Y  +L    T  +FQLESSGM+
Sbjct: 585  LRNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMK 644

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPML 682
            + L  ++P  IED+IA+ +LYRPGP+++ +V  + +RK+G +++   HP     L+ P L
Sbjct: 645  KYLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPL 704

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            + T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I 
Sbjct: 705  ESTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNID 764

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++
Sbjct: 765  GGLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQV 824

Query: 803  KKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK 860
                 D R  F + I+PPSVN     F V D + I Y L A+KGVG      I+ A  D 
Sbjct: 825  VFLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDG 884

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGAL----------------DCFGYSRMQLLQS 904
             F  L DFC+RVD KK+ +R LE+L+ AG                  DC    R  L + 
Sbjct: 885  AFKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQ 944

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L      A    +N+     ++F     +      LE    +    R   EQ  LG Y +
Sbjct: 945  LPEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDVYWQPQD-RLRYEQATLGLYLT 1003

Query: 965  GHPLDVYK 972
            GHPLD Y+
Sbjct: 1004 GHPLDEYR 1011


>gi|330859615|emb|CBX69955.1| DNA polymerase III subunit alpha [Yersinia enterocolitica W22703]
          Length = 921

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/802 (43%), Positives = 496/802 (61%), Gaps = 33/802 (4%)

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            +++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +        E+ L  
Sbjct: 1    MRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM-----STEDFLVE 55

Query: 314  KAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            K+  GLE RL          AQ    Y +RL+ EL VI +M F GYFLIV +FIQW+K N
Sbjct: 56   KSKQGLEERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDN 115

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD V
Sbjct: 116  GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLV 175

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +
Sbjct: 176  IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-K 234

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D  
Sbjct: 235  AFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAE 294

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDD 605
             + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K     +D++ IP DD
Sbjct: 295  GNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLDD 354

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
             +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + +V N  +
Sbjct: 355  KKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFID 414

Query: 664  RKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
            RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD+LRRAMG
Sbjct: 415  RKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMG 474

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W
Sbjct: 475  KKNPAEMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 534

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYY 837
            +K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V D   I Y
Sbjct: 535  LKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVY 594

Query: 838  SLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE L+ +GA D  G 
Sbjct: 595  GIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSGAFDRLGP 654

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-----SSVR 951
             R  L+ SL    K A    K       ++F    G  +D     + S  N       + 
Sbjct: 655  HRAALMSSLGEALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQSYANVPPWQEQIV 710

Query: 952  FENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
             + E+  LG Y +GHP+  Y K I R  G    ++   T RG     A +V++ +   T+
Sbjct: 711  LDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIAARIMVTK 770

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G+RIG  T  + +   E   F
Sbjct: 771  RGNRIGICTLDDRSGRLEVMLF 792


>gi|297529096|ref|YP_003670371.1| DNA polymerase III subunit alpha [Geobacillus sp. C56-T3]
 gi|297252348|gb|ADI25794.1| DNA polymerase III, alpha subunit [Geobacillus sp. C56-T3]
          Length = 1092

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/1032 (38%), Positives = 592/1032 (57%), Gaps = 65/1032 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL V S YSL + A ++  +  +       A+A+TD N L+ A+ F ++    GI+PI
Sbjct: 2    FVHLHVLSGYSLFQSAAAVEALAARAKQLGYQALALTDRNVLYGAIPFYRECKQNGIRPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG   D+ +         G+  FP    +VLL +  EGY+ L+E +S M  + + K    
Sbjct: 62   IGVTADVALS--------GEEAFP----LVLLAANEEGYRHLLE-ISTMMQMGETKHMEE 108

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              L  L    + G+I +T GS G ++        + A++ L  + +LF  RLYV +QR  
Sbjct: 109  AALVRL----SGGIIAITPGSEGRVESLVAAGEWERAKEALGRYHQLFPGRLYVAVQRGE 164

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--QKDRPRV 248
                  E+ ++QLA    +P+VATN+  ++   D  A   L A+    +++  + D  R 
Sbjct: 165  QTRAPYEAGLLQLAEETGVPIVATNDVRYVERSDAVAWRCLQAIGRGALLADIEDDNGR- 223

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                YL    EM   F+DLPEALEN++ IA +C   ++     LP +   + +      +
Sbjct: 224  ----YLAGPEEMARRFADLPEALENSLAIADQCELQIEFGGWRLPAYPVPDGET----AD 275

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            + LR         RL++  +A+   + D  Y +RL  EL+VI  + FS YFLIVAD + +
Sbjct: 276  SYLR---------RLSEQGLARRVPSADERYWRRLSHELDVIQSLHFSDYFLIVADVLAY 326

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I  GPGRGS AGS+ AYAL+ITD+DP+++ LLFERFLNP+R S+PD D+DF   R
Sbjct: 327  ARRRGILTGPGRGSAAGSLVAYALSITDVDPIKYGLLFERFLNPERASVPDIDLDFPDGR 386

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVIRYV +KYG +RVAQIITFG+  AKAALR+  +AL +P  + +++  L+P+     
Sbjct: 387  REEVIRYVADKYGRDRVAQIITFGTFGAKAALRETAKALGVPGREAEQVAALLPSK--QS 444

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+L Q  A+ + FR A  A P     L ++QKLEGL RH S HAAG++I   PL + VP+
Sbjct: 445  VTLRQWHAESAAFRRAVAAVPQGREWLAVAQKLEGLPRHTSIHAAGVIISPEPLVRFVPL 504

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604
             +    + P+TQ+ M  +E  GL+K DFLGL+TLTL+++ +  +  Q G   D+  +P +
Sbjct: 505  -QPSHGEWPLTQYAMGALEALGLLKIDFLGLRTLTLIEQIVRLIERQTGKPFDIRTLPLN 563

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY LL    T GIFQLESSGM++ L  ++P   ED++A+ +LYRPGP+  I VY  R
Sbjct: 564  DEKTYALLGAGDTNGIFQLESSGMKRILAELRPSEFEDVVAVNALYRPGPMQMIPVYIRR 623

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K G+E +  IHP + P+L  T GV+IYQEQ+MQIA  L+G+SL +ADVLRRA+ KK K  
Sbjct: 624  KRGEEPVEYIHPDLAPILAPTYGVLIYQEQIMQIAARLAGFSLGQADVLRRAVAKKEKAL 683

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + KQ++ F++G + NG  K IA  +++ +A+FADYGFN+SHA +YA++SY  A+MK HYP
Sbjct: 684  LAKQRQAFVAGCAANGYPKEIAEELYQHIARFADYGFNRSHAVSYALLSYAMAYMKAHYP 743

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            + F A  +T    + EK   +  +A +  I ++ PSVN       V  + I   LA +K 
Sbjct: 744  LCFYAVMLTNASGDREKAAVYYWEAARKGINVLLPSVNKSGFRSSVEGSAIRLGLAMVKQ 803

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG+     + E  A+ PF    DF +R+  K L R  LE+L+  GA D FG  R  LL S
Sbjct: 804  VGSAAKLIVEERKANGPFADFFDFAARLLPKGLGRPALEALISVGAFDEFGADRASLLAS 863

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGF 961
            +D   ++AQWV+           A E G  S K    K++  +S   S R   E   LGF
Sbjct: 864  IDIAIEHAQWVQ-----------ALEAGGLSLK---PKYAAAHSWPLSERRRREAEFLGF 909

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
              + HP  V +P+L+  G       VA ++G +  +   VV  ++ +T++G  + + T  
Sbjct: 910  AVTPHPAAVCRPLLQAAGAV----CVADVQGPSTVVGGAVVRIRKTRTKQGEEMAFFTVG 965

Query: 1022 EPAKEYEANFFP 1033
            + + E EA  FP
Sbjct: 966  DESGELEAVAFP 977


>gi|28212073|ref|NP_783017.1| DNA polymerase III DnaE [Clostridium tetani E88]
 gi|28204516|gb|AAO36954.1| DNA polymerase III, alpha chain [Clostridium tetani E88]
          Length = 1166

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/1064 (36%), Positives = 610/1064 (57%), Gaps = 62/1064 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K  +++ L  H+ YSLL+ +  +  ++ K+      +IAITD   ++  +EF ++A   G
Sbjct: 7    KEYNWISLHQHTEYSLLDSSAKITELIKKVKELGMKSIAITDHGVMYGCVEFYKEAIKEG 66

Query: 67   IQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            I+PIIGC++ +  +  ++K  +     +     +VLLV    GY+ L+E+VS+  + D  
Sbjct: 67   IKPIIGCEIYVVPKSMHIKRVDNDNAIY----HLVLLVKNDVGYRNLMEIVSKASI-DGF 121

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R+   +L+E  +EGLI  +    G +       + + AEK  L +K++F +  Y+ 
Sbjct: 122  YYKPRVDHEFLRE-HSEGLIASSACLGGEVQSYILKGNIEKAEKAALNYKEIFKEGFYLE 180

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H   ++ +  ++++ ++    +PLVATN+  ++ +ED  AHD+L+ V     V +++
Sbjct: 181  LQDHGMKEQVKVNNELIAMSKRLSIPLVATNDVHYIEKEDSRAHDILLCVQTGKTVEEEN 240

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDD 302
            R R  T + YLK+  EM ++FS +PEALENT++IA +C+F    H   LP F +  + D+
Sbjct: 241  RMRYPTGEFYLKSPEEMYNLFSHVPEALENTIKIAEQCNFQYNFHESKLPTFPLPDKVDN 300

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIV 360
                  + LR     GL+ +         Y   D   + RL++ELNVI  M +  YFLIV
Sbjct: 301  Y-----DYLRELCYEGLKEK---------YDTVDEKLKNRLEYELNVIKEMGYVDYFLIV 346

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++AK+ +I  GPGRGSGAGS+ AY L IT IDP+++ L+FERFLNP+R+SMPD D 
Sbjct: 347  WDFIRFAKEKDIMTGPGRGSGAGSIVAYTLGITKIDPIKYGLIFERFLNPERISMPDIDS 406

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC +RR EVI YV  KYG   V+QI TFG++ A+A +RDVGRA+   Y +VD++ K+IP
Sbjct: 407  DFCYERRQEVIDYVVEKYGENNVSQIATFGTMAARACIRDVGRAMNYSYVEVDKIAKMIP 466

Query: 481  NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              P   +++ +A+  +   +     D  ++ L+ I+ KLEGL RH STHAAG+VI   PL
Sbjct: 467  TVPGTSITIDKALQLNPELKAIYENDHRINDLINIAIKLEGLPRHTSTHAAGVVIASHPL 526

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
               VP+ ++  +   VTQF M  +E+ GL+K DFLGL+TLT+++ ++  + + RG+ +DL
Sbjct: 527  VNYVPLQKNEGN--IVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVAMIKENRGIDIDL 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              + FDD E Y+++    T+G+FQLES GM   +  ++PD +EDIIA +SLYRPGP+  I
Sbjct: 585  DKLDFDDKEVYNMIGEGKTVGVFQLESDGMTSFMRELKPDSLEDIIAGISLYRPGPMAEI 644

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y + K   EKI  + P ++ +L  T G ++YQEQVM++ + L+GYS+  +D++RRAM 
Sbjct: 645  PKYISNKKNPEKIEYLTPRLEDILSVTYGCMVYQEQVMEVVRKLAGYSMGRSDLVRRAMS 704

Query: 719  KKIKEEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            KK  + M+++++ F            + G  +NGI + I   IF+ +  FA Y FNKSHA
Sbjct: 705  KKKHDVMEEERKNFVYGIIDESGNIEVPGCVRNGIDEKIGNKIFDSMLDFASYAFNKSHA 764

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYAV+++QT ++  +YP E +AA +   M N EK+  + + A++  ++++PP+VN    
Sbjct: 765  AAYAVVAFQTGYLMRYYPTECIAAMLNSVMGNSEKVAYYTRYAKEEGMEVLPPNVNESYG 824

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESL 885
             F V  NRI + LAAIK VG     +I+EA   K  F +LEDFCS+VD   +N+R +ESL
Sbjct: 825  KFTVKGNRIRFGLAAIKNVGLNAIENIVEARGKKGTFANLEDFCSKVDLSCINKRAMESL 884

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKF 943
            + AGA D F   R ++L   + +       ++       N+F   + +        + +F
Sbjct: 885  IKAGAFDNFQIFRSRMLAVHEKVLDSINNDKRKNIQGQVNLFEELEESSLEIQYPNINEF 944

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYK------------PILRKMGIKG--YEESVAT 989
              +N       E+ + G Y SGHPLD YK             I+   G++G   E     
Sbjct: 945  DKKNI---LSMEKEMTGLYLSGHPLDEYKNDFKNKVSINISDIVSDKGLEGDLIEGERKV 1001

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              G  + +  ++ +  +K TR    + ++   +     E   FP
Sbjct: 1002 KDGEKVIIGGIITNVNKKATRSNEMMAFIEVEDLYGTIEVIIFP 1045


>gi|253795644|ref|YP_003038740.1| DNA polymerase III, alpha subunit [Candidatus Hodgkinia cicadicola
           Dsem]
 gi|253739952|gb|ACT34287.1| DNA polymerase III, alpha subunit [Candidatus Hodgkinia cicadicola
           Dsem]
          Length = 995

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/918 (40%), Positives = 545/918 (59%), Gaps = 38/918 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV+L+V S+YS+L+  LS++ I    A   QPA+A+TDT+ L  ALEF  K  AAG++PI
Sbjct: 7   FVNLKVRSTYSVLDSTLSVDRIAQLAAERGQPAVALTDTS-LHGALEFCVKCDAAGVKPI 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +GC+L +D Q  +        P P +  + L V + +GY  L++LV+     + G +  +
Sbjct: 66  VGCKLLVDCQHAV-----ASAP-PLL--VTLAVKSEKGYANLLKLVNNS---EVGARHHK 114

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I L+ L     +GL+ + G + G + + +     + A       +      +   +QR  
Sbjct: 115 ITLAALAA-SAQGLLAIAGEAGGMVWQLYKKLGFEGASTAFALLQDSMEGSVCAEVQRGA 173

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                 E  VV+ A    L LVATN +LF +  D+E + VL A+      S +D    + 
Sbjct: 174 VVWPEYEQAVVEAAGALSLMLVATNETLFETRADFEVYKVLRAI------SSRDEVGASE 227

Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            ++ K+ ++M+S F+D+P+AL  T +++  C F LQ  A  LP F         + E   
Sbjct: 228 HNFFKSYADMLSRFADMPKALAATAKVSALCEFRLQARAVTLPAF-----SGAVRREARA 282

Query: 311 LRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
           L  KAV  LE +  + G   K +    Y +RL +EL VI R  +SGYFLIV+DF  WAK 
Sbjct: 283 LYTKAVRALEHQFYKVGKANKPW----YHRRLLWELGVITRASYSGYFLIVSDFTLWAKA 338

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
           +N+ VGPGRGS AGS+ AY+L +T++DP+   LLFERFLN DR  +PD D+DFC   R++
Sbjct: 339 HNVYVGPGRGSAAGSLVAYSLGVTNVDPIAHGLLFERFLNADRAGLPDIDVDFCHQGREQ 398

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
           V+RY Q KYG   V QI TFG+LQ +AA++DV R L++P+   + LCK +P       S+
Sbjct: 399 VVRYAQFKYGELCVGQISTFGTLQVRAAIKDVSRCLEVPFETANALCKAVPTYGRGLESV 458

Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            A    +    A L    + +L+ +++KL G+YR  STHAAG+VI +  L   VP   D 
Sbjct: 459 YAALARTALVPAEL----LAKLMAVTEKLIGVYRLVSTHAAGLVISNSQLRDSVPTAWDE 514

Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHET 608
            + + V +++M W+E AGL KFD LGLKTL  + + L   +A R   V++ L  F   + 
Sbjct: 515 ANRVSVVRYSMNWVESAGLPKFDLLGLKTLAAVDEVLTQLMASR---VNVGLECFGGEKA 571

Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
           + L+     LG FQLES GM++ ++ + P  + D+ AL++LYRPGP+ +I  Y++ K+G 
Sbjct: 572 FKLICGGRVLGTFQLESRGMKKHIKHVLPSSLNDLAALIALYRPGPMKHIKQYSDTKHGS 631

Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
              VS+H  +D +L ET GV+IYQEQVM IAQ L+GYSLSEADVLR+AM KK   EM  Q
Sbjct: 632 AARVSLHQAVDHLLDETYGVVIYQEQVMLIAQKLAGYSLSEADVLRKAMAKKDMREMLVQ 691

Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
           ++RF+ GA  NG+ + +A ++F+ LA+FADYGFNKSHA AY+ ++Y TA +K  +P+EF 
Sbjct: 692 RQRFVGGAVANGVKRALAASLFDGLARFADYGFNKSHALAYSALAYITAHLKASFPLEFY 751

Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
           AA+M++E+    K+     +A    I+ + PSV  P + FK G+  I++ L+AIKG+G  
Sbjct: 752 AANMSVEIAEQAKMSSLYYEAVSSGIKFVAPSVQAPFLKFKAGNGFIHFPLSAIKGIGEP 811

Query: 849 TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
               I  A   +PF  L DFC RV  +   +RVL+SL+ AGA+DCFG SR  L+ SLD +
Sbjct: 812 VVASIAAARGSQPFADLTDFCVRVSPRAATKRVLKSLIAAGAMDCFGASRRALMASLDAM 871

Query: 909 QKYAQWVEKNRTNKHENI 926
            + A+  +K R +   ++
Sbjct: 872 ARCAK-SKKGRVDASSDV 888


>gi|282882675|ref|ZP_06291285.1| DNA polymerase III subunit alpha [Peptoniphilus lacrimalis 315-B]
 gi|281297488|gb|EFA89974.1| DNA polymerase III subunit alpha [Peptoniphilus lacrimalis 315-B]
          Length = 1145

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/1050 (36%), Positives = 608/1050 (57%), Gaps = 55/1050 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F+HL VHS YSLL+ +  +  I  +       A+A+TD  N++ A++F +     G++P
Sbjct: 3    NFIHLHVHSEYSLLDASTKIEEIPVRAKELGMKAVALTDHGNMYGAIDFYKACKKVGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  Q +L + ++    +     +VLL    +G + L+++VS +  +D      
Sbjct: 63   IIGCEIYVS-QKSLYLKDRTNERY----HLVLLAENNQGLKNLMKIVS-IAFVDGYYYKP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+ L  L++  ++G+I  +   +G + R         A+K  L ++ +FG D  ++ LQ 
Sbjct: 117  RVDLDVLKKY-SKGIIATSACLAGEVQRLIQRRDYDGAKKAALRYRDIFGKDNFFLELQD 175

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ R   ++ +L+    + L  +N+  +L +ED +A DVL+ +   + +  + R +
Sbjct: 176  HGIPEQKRVNRELNRLSKETGISLSCSNDVHYLKKEDAKATDVLLCIQTGSKIKDEKRMK 235

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + YLK+  EM +IFSD  +A+ NT  IA RC+   +     LP F       +   
Sbjct: 236  FPTEEFYLKSAEEMENIFSDNLDAINNTGIIADRCNVDFEFGHYHLPEF------KVPSG 289

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFI 364
              NE      + LE +LA+  + K Y   D   + R + E   I +M F  YFLIV DFI
Sbjct: 290  YTNE------SYLE-KLAKEGLNKRYKVIDKKIKDRFNMEFQTITQMGFVDYFLIVWDFI 342

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AKKNNI VGPGRGS AGS+ +Y L I DIDPL+F LLFERFLN +R+SMPD DIDFC 
Sbjct: 343  NYAKKNNIQVGPGRGSAAGSIISYGLGIIDIDPLKFDLLFERFLNKERVSMPDIDIDFCY 402

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI YV  KYG ERVAQI+TFG++Q++ A+RDVGR L + YS+VD + K +P+  A
Sbjct: 403  ERREEVIDYVCEKYGDERVAQIVTFGTMQSRQAIRDVGRVLDIAYSRVDYIAKQVPH--A 460

Query: 485  HPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              ++L    D S  F+E    D     L++I++++EGL RH STHAAG+VI   PL+  V
Sbjct: 461  LKMTLDKALDISESFKELYEKDKEARNLIDIAKRIEGLPRHTSTHAAGVVISKNPLTDYV 520

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602
            P+ R+    +  TQFNM  +E+ GL+K DFLGL+TLT+L+ ++  +     VK+D S   
Sbjct: 521  PLTRN--DQIIATQFNMIQLEELGLLKMDFLGLRTLTVLRDAISLVYDNYKVKIDFSEFT 578

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +DD +   +     TLG+FQ ESSGMR  L+ ++PD   D++A  +L+RPGP+  I  + 
Sbjct: 579  YDDEKVLKMFAKAETLGVFQFESSGMRLFLKELKPDAFSDLVAANALFRPGPMKQIPKFI 638

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K+ K KI  IHP+++P+LK+T G I+YQEQVMQI Q++ GYSL  AD++RRA+ KK  
Sbjct: 639  ESKHDKSKISYIHPILEPILKDTYGCIVYQEQVMQIVQIVGGYSLGRADIVRRAISKKKM 698

Query: 723  EEMDKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              M+++++ FI         GA KNG+ +  A  I++L+  FADY FNKSH+ AY+VI+Y
Sbjct: 699  AVMEEERKNFIYGNEKENVCGAIKNGVDEKSANEIYDLIIDFADYAFNKSHSVAYSVIAY 758

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            ++AW+K +YP EF+AA ++    +++++  + ++ ++  I ++PP+VN    +F V   +
Sbjct: 759  RSAWIKYYYPREFMAAQISTYTSDIKQVSLYIEELKRLGIGLLPPNVNYSQKNFTVEGKK 818

Query: 835  IYYSLAAIKGVGTTTARHIMEASADK--PFDSLEDFCS---RVDSKKLNRRVLESLVFAG 889
            I + L A+K VG      I++A  DK   F SL DF     +V ++ LN++ LESL+  G
Sbjct: 819  IRFGLKAVKNVGENLIEAIVQAR-DKLGNFTSLWDFVDKVQKVSAQVLNKKALESLIRCG 877

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            ALD F  +R Q L   + + +  Q   +N       +F +   +  D   L+ FS+ +  
Sbjct: 878  ALDDFDGNRAQYLAVYEKVMENNQKSIRNNIRGQVTLFGNLNKS-EDLPNLKDFSLRD-- 934

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE------SVATIRGNNIRLAAMVVS 1003
             +   E+ V+G Y SGHPLD Y+P L         E      S + I+  +IR+A ++ +
Sbjct: 935  -KLNMEKEVIGIYVSGHPLDDYRPALISFSNTNTGEIFESYNSSSLIQNKDIRIAGLLKN 993

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K+   T+    + + +  +     E   FP
Sbjct: 994  KKTMITKTNKVMAFASLEDLFGTIELIIFP 1023


>gi|228993333|ref|ZP_04153249.1| DNA polymerase III subunit alpha [Bacillus pseudomycoides DSM 12442]
 gi|228766401|gb|EEM15044.1| DNA polymerase III subunit alpha [Bacillus pseudomycoides DSM 12442]
          Length = 1096

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/1018 (36%), Positives = 595/1018 (58%), Gaps = 52/1018 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L+ A  ++ ++ +       ++AITD N ++  + F +     G++PIIG    +    
Sbjct: 1    MLKSACKIDELVSRAKELGFSSLAITDENVMYGVIPFYKACKKNGVRPIIGLTASV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                + + +  +P    +VLL     GYQ L+++ S +      K    I   WL     
Sbjct: 57   ---FSEEEEQSYP----LVLLAENEIGYQNLLKISSTI----MTKSKDGIPKKWLSHYA- 104

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQV 200
            +GLI ++ G  G I++       ++AE+    ++ +FG   Y++LQ H   D  + + ++
Sbjct: 105  KGLIAISPGKDGEIEQLLLQGRDEIAEEVARAYQNMFGS-FYMSLQHHAIQDELFLQEKL 163

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSE 259
             Q A    +P+VATN+  ++++ D    + L++V   T ++  DRPR+  D +YLK+ +E
Sbjct: 164  PQFANEINIPVVATNDVRYVNQSDALVQECLLSVQSGTKMTDPDRPRLKTDQYYLKSSAE 223

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M ++FS   EAL+NTV IA RC   +  H   LP+F             NE  +  +   
Sbjct: 224  MEALFSHAEEALQNTVRIAERCHVEIPFHVNQLPKF---------PVPSNETSDAYLR-- 272

Query: 320  EVRLAQGAIAKGYHA-QD-YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
              R+ +  + K Y A QD +R+RL+ EL VI+RM FS YFLIV DF+++  ++ I  GPG
Sbjct: 273  --RICEDGLNKRYGAVQDVHRKRLNHELEVISRMGFSDYFLIVWDFMKYGHEHGILTGPG 330

Query: 378  RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
            RGS AGS+ +Y L ITDIDP+ ++LLFERFLNP+R+++PD DIDF   RRDE+IRYV++K
Sbjct: 331  RGSAAGSLVSYVLEITDIDPIEYNLLFERFLNPERVTLPDIDIDFPDIRRDEMIRYVKDK 390

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            YG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +  +A  +   
Sbjct: 391  YGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSRVGITLK-EAYEESGS 449

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
             RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V + ++  +D+ VTQ
Sbjct: 450  LREFVQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI-QEGHNDVYVTQ 508

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKG 616
            +  + +E+ GL+K DFLGL+ LTLL+  L F+  + G ++D+  +P  D +T+ LL    
Sbjct: 509  YPAEVLEELGLLKMDFLGLRNLTLLENILTFIVNKTGKQIDIRNLPLQDEKTFQLLGRGD 568

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            T G+FQLES GMR  L  ++P+  EDI+A+ +LYRPGP++ I  +   K+GK +I  +H 
Sbjct: 569  TTGVFQLESGGMRNVLRSLKPNEFEDIVAVNALYRPGPMEQIPTFIESKHGKRQIHYLHS 628

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
             + P+LK T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK +E +D++++ F+ G 
Sbjct: 629  DLKPILKSTYGVIVYQEQIMQIASQLAGFSLGEADLLRRAVSKKNREILDQERKHFVQGC 688

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP+EF+ A ++  +
Sbjct: 689  LRNGYDETSAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYPLEFMTALLSSAI 748

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
             N +KI ++ ++ ++    ++PPS++    +F++  N I YSL +I+ +G  T   ++E 
Sbjct: 749  GNEDKIVQYIRETKRKGFHVLPPSLHRSSYNFQIEGNAIRYSLLSIRNIGMATVNAVIEE 808

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
                PF  L +FC R+ +K +  R LE+ V+AG  D F  SR  L  S+    +YA    
Sbjct: 809  RERNPFQDLFEFCLRMPAKFVTERNLEAFVWAGCFDDFQVSRTTLFNSIKGALEYAS--- 865

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-RFENEQRVLGFYFSGHPLDVYKPIL 975
                       A E G  S   ++     E S + +  NE+  LGFY S +P   Y  ++
Sbjct: 866  ----------LARELGEESVPKSVYVQGEELSFIEQLNNEKEALGFYLSSYPTAQYAKLV 915

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +++ I    +++   R N  R    V   +  +T+K  ++ +VTF +   E EA  FP
Sbjct: 916  KELEIPSLAQAMRQKR-NVQRAIVYVTGVKVIRTKKLQKMAFVTFCDQNDEMEAVVFP 972


>gi|258645443|ref|ZP_05732912.1| DNA polymerase III, alpha subunit [Dialister invisus DSM 15470]
 gi|260402794|gb|EEW96341.1| DNA polymerase III, alpha subunit [Dialister invisus DSM 15470]
          Length = 1145

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/1046 (36%), Positives = 584/1046 (55%), Gaps = 56/1046 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YSL +G   +  ++  +    Q AIAITD   ++ A+   ++    GI+P
Sbjct: 3    SFVHLHSHTEYSLFDGTCRIKELVSYVKELGQTAIAITDHGVMYGAVYLYKECLKQGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY---LLDQGK 126
            IIGC++ +            K     +  ++LL     GY+ +I++ S+ +      + +
Sbjct: 63   IIGCEIYVTAGSRFIKDADKKE---KLAHLILLAENNTGYKNIIKICSKSWTEGYYHKPR 119

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
                + L +      EG+I L+    G + +A      + A K +  +   FG D  ++ 
Sbjct: 120  ADHDLLLKY-----HEGVIALSACIGGELPQAVLKGDLEQARKIIRFYMDTFGKDNYFIE 174

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H    +      + +LA  + L LVATN+  +  ++D  + ++ + ++    +    
Sbjct: 175  LQNHGLPEEAAVRPALAELAKEYGLGLVATNDFHYTRKKDAGSQEIKLCISTGNTMDDPG 234

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R    + Y K+  EM ++  + P A+ENT  IA RC+         LP F   E    
Sbjct: 235  RFRFANEEFYCKSGEEMKALLGNFPGAIENTARIAERCNVTFTFGKHKLPSFTVPE---- 290

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGY--HAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                      +  A    RL + A+ + Y  +    ++RLD+EL VI +M F+ YFLIV 
Sbjct: 291  ---------GETAATYLRRLCEEALPERYPNYGNKEKERLDYELGVINQMGFADYFLIVM 341

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQ+AK + IP+GPGRGS AGS+ +Y L IT++DPLRF LLFERFLNP+R+SMPD D D
Sbjct: 342  DFIQYAKTHGIPIGPGRGSAAGSIVSYLLHITEVDPLRFHLLFERFLNPERISMPDIDTD 401

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
             C   R +VI Y+  KYG + VAQIITFG+L A+A +RDVGR L MP  +VDR+ K+IP+
Sbjct: 402  LCYRGRGQVIEYLAKKYGEDHVAQIITFGTLAARAVIRDVGRVLSMPLREVDRIAKMIPS 461

Query: 482  DPAHPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V+L+   + S+ F E   +D ++ RL++    LEGL R++ THAAG+VI   P+ 
Sbjct: 462  GPG--VTLRTTLERSKEFAELYASDSNIHRLIDHCLDLEGLSRNSGTHAAGVVICSEPVE 519

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599
            + VP+ +  + +   TQ+     E+ GL+K D LGL+ LT++  +L+ +   RG+ +D+ 
Sbjct: 520  EYVPI-QLTQDNFIQTQYEKDLDEELGLLKMDLLGLRNLTVIHDALEMIKTNRGIALDIE 578

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P  D  T  +L +  T+G+FQ ESSG    L  ++P+C ED+I +V+LYRPGP+ + +
Sbjct: 579  ALPHVDELTCKMLRSGDTVGVFQSESSGFTSLLMQLEPECFEDLIPMVALYRPGPLGSGM 638

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
               + NRK+GK  +   HP ++ +LKET G+I+YQEQVMQIA ++ G+SL +AD+LRRAM
Sbjct: 639  AEDFINRKHGKTAVDYPHPSLETILKETYGIILYQEQVMQIASVMGGFSLGQADLLRRAM 698

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            G K  E +  Q++ F+ GA+   IS+ IA  +F+L+  FA YGFNKSH+  Y  I++QTA
Sbjct: 699  GHKEPEILQAQRKLFVKGAAVQKISEEIANRVFDLMVHFAGYGFNKSHSVCYGWIAWQTA 758

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HY  EF+AA MT    +  K+ ++  D R+  ++I  P VN     F V  + I +
Sbjct: 759  YLKAHYRPEFMAAMMTCYNGDRNKVSRYISDTRRAGVKIAAPDVNRSEAGFSVNGDTILF 818

Query: 838  SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LA ++ VG      I+ A   D  F S+ D   R+DSK LN R  ESL+  GA+D FGY
Sbjct: 819  GLAGVQNVGEGIVNSIIGARKKDGAFKSISDLLERIDSKGLNSRACESLIRCGAMDSFGY 878

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R QL++ L      A     +R +   ++F  E    +  I        +++ + ++E+
Sbjct: 879  NRRQLIEVLPQALNNASVTRSDRESGQLSLFGGE--IKAKTIVYPDLPDMSAAEKIDSER 936

Query: 957  RVLGFYFSGHPLDVYK-------PI--LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            ++LGFY SGHPLD YK       PI  L   G+K Y+  + ++ G   R+ +M       
Sbjct: 937  KLLGFYVSGHPLDSYKQQMKYCSPIYSLLSDGMK-YDGKMVSVGGIITRVKSMT------ 989

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+KG+ +G+V+  +     EA  FP
Sbjct: 990  -TKKGAPMGYVSLEDYEGAMEAVIFP 1014


>gi|160878493|ref|YP_001557461.1| DNA polymerase III DnaE [Clostridium phytofermentans ISDg]
 gi|160427159|gb|ABX40722.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans ISDg]
          Length = 1186

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/1073 (35%), Positives = 604/1073 (56%), Gaps = 58/1073 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ +SLL+G+  +  +  +       A+AITD   ++  ++F +   A GI+P
Sbjct: 2    SFTHLHVHTEFSLLDGSGKIKEMAAQAKKLGMDALAITDHGVMYGVIDFYRACLAEGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +    N +   +G         +VLL     GY  LI++VSR +  +      
Sbjct: 62   IIGCEVYV--APNSRFDKEGSASEERYHHLVLLAENDIGYHNLIKIVSRGFT-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L+E  +EG+I L+   +G +      N  + A+   L  +++FG    ++ LQ 
Sbjct: 119  RVDHELLKEY-SEGIIALSACLAGEVAVMLRRNFFEEAKASALKLQEIFGAGNFFLELQD 177

Query: 189  HRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H GY   +     +++++    +PLVATN+  +  + D  AHD+L+ +     V+ +DR 
Sbjct: 178  H-GYPEQKSVNQGLLRISEETNIPLVATNDIHYTYDTDETAHDILLCIQTQKKVTDEDRM 236

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---------- 295
            R      Y+K+  EM  +F    +AL+NT EIA+RC+  ++     LP++          
Sbjct: 237  RYAGGQFYMKSPEEMRELFPYALQALQNTEEIAKRCNVTIEFGHYKLPKYDVPAPYTVSP 296

Query: 296  ----IEKECDDIQKEEENELRNKAVAGLEV--RLAQGAIAKGYH--AQDYRQRLDFELNV 347
                 + E D      +N   N  +   E   +L +  + + Y   + +   RL++EL  
Sbjct: 297  GSGSTDDEGD--ISASQNISTNTDILAREYLRKLCEEGLVRRYKDPSTELWDRLNYELET 354

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I  M F  YFLIV DFI++AK N+I VGPGRGS AGSV +Y L IT+IDP+++SLLFERF
Sbjct: 355  IENMGFVDYFLIVWDFIKYAKDNDIIVGPGRGSAAGSVVSYCLEITNIDPIKYSLLFERF 414

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R++MPD DIDFC +RR EVI YV +KYG +RV QI+TFG++ A+A +RDVGRAL M
Sbjct: 415  LNPERLTMPDIDIDFCFERRQEVIDYVVSKYGKDRVVQIVTFGTMAARAVIRDVGRALDM 474

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
            PY+ VD + K+IP +    +  +A+  +   ++   +DP V  L+++S++LEGL RH S 
Sbjct: 475  PYASVDVVAKMIPTELGITIE-KALNINPDLKKLYESDPEVMHLIDMSKRLEGLPRHTSM 533

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HAAG+VI + P  + VP+ R    D   TQF M  +E+ GL+K DFLGL+TLT++Q ++ 
Sbjct: 534  HAAGVVISNAPADEYVPLSRS-SDDSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVL 592

Query: 588  FLAQRGVK--------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
             + Q   +        +++  I ++D +   L+++  T GIFQLESSGM+  ++ ++P  
Sbjct: 593  LVNQAKARLGETEENFLNIDEIDYNDSKVLDLISSAKTEGIFQLESSGMKSFMKELKPQN 652

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            +EDIIA +SLYRPGP+D I  Y   KN ++ I      ++P+L  T G I+YQEQVMQI 
Sbjct: 653  LEDIIAGISLYRPGPMDFIPKYIQGKNNQKSIQYECKELEPILSPTYGCIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF--------ISGASKNGISKTIAVNIFE 751
            + L+GYS   +D++RRAM KK    M+K+++ F        + G    GI + +A +I++
Sbjct: 713  RELAGYSFGRSDLVRRAMSKKKASVMEKERQSFVYGNVEEGVPGCISKGIPEAVANHIYD 772

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  FA Y FNKSHAAAYAV+SYQTA++K +YPVEF+AA MT  +DN  K+ ++    RQ
Sbjct: 773  EMTDFAKYAFNKSHAAAYAVVSYQTAYLKCYYPVEFMAALMTSVIDNPSKVAEYIYTCRQ 832

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCS 870
              I+++PP +N     F V    I Y L+AIKG+G       ++E   + P+ +L+DF S
Sbjct: 833  MGIKLLPPDINDGYATFTVSGENIRYGLSAIKGLGRPVIDALVIEREENGPYLNLKDFAS 892

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--A 928
            R+  K++N+R +ES + +GA D    +R QL+     +       +K       ++F   
Sbjct: 893  RLSGKEVNKRTIESFIKSGAFDSMPGTRKQLMHVYVGVLDGVSQEKKRAMTGQMSLFDLD 952

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG-----Y 983
             +    +++I   +    +       E+ VLG Y SGHPL+ Y+ +L++           
Sbjct: 953  GDAKVMNEEIIFPEVGEYSKEELLAFEKEVLGIYVSGHPLEAYELLLKRNATANTADFIV 1012

Query: 984  EESVATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            EE   T++   G+ + +  M+ S+  K TR  + + ++T  +     E   FP
Sbjct: 1013 EEETNTVKVADGDTVTVGGMITSRTLKTTRTNAVMAFITLEDMFGTMEVIIFP 1065


>gi|315124217|ref|YP_004066221.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315017939|gb|ADT66032.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 961

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/959 (39%), Positives = 570/959 (59%), Gaps = 48/959 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F  ++F Q   A G++PI
Sbjct: 4   FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGVIDFYQTMKAQGLKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  +   D L      +  F     + L      GYQ L+ L S+ Y+  +G     
Sbjct: 64  IGMEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180
                L E  +EGLI  +    G +        +R   F +   + A++  L +KK+F D
Sbjct: 117 RINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y  + RH  G  R  +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
           ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLDLNLGNPTPPNFKFT 296

Query: 296 --IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDFE 344
               K+ + I  EE  E    N  +        GLE RL    I +  H ++Y+QRL+ E
Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLK--FIDESKH-EEYKQRLEVE 353

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523
             M     D L KL+P +    ++L A  + + + +E     P    + E ++ LEGL R
Sbjct: 474 CDMSIQDADELAKLVPEELK--ITLDAAYEKEPKIKEFIDRHPKGPEVWEYARALEGLNR 531

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581
           +A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT+
Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591

Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           +  ++  + +R  K +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  
Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
           EDIIA+++LYRPGP+++ ++  + +RK+G + I      ++ +L+ T GVI+YQEQVMQI
Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA 
Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAG 771

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++P
Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831

Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
           PS+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D 
Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T
Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELT 950


>gi|194017300|ref|ZP_03055912.1| DNA polymerase III subunit alpha [Bacillus pumilus ATCC 7061]
 gi|194011168|gb|EDW20738.1| DNA polymerase III subunit alpha [Bacillus pumilus ATCC 7061]
          Length = 1111

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/1031 (36%), Positives = 589/1031 (57%), Gaps = 49/1031 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+VHLQVHS YSLL  A  +  ++ K       A+A+TD + ++  +EF ++    GI+P
Sbjct: 2    SYVHLQVHSGYSLLSSAAKVKELVLKAKELGCKALALTDDHVMYGTVEFYKECKKHGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG    + + +      Q    +P    +VLL    EGYQ LI++ S +    + K   
Sbjct: 62   VIGLTASVFIDE------QETEAYP----LVLLAKNNEGYQNLIKISSVL----KSKSKA 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
             +   WL+     GLI +T G SG I+     +  + A       K +FG+  +Y+ LQ 
Sbjct: 108  GLKEKWLKSY-HRGLIAMTPGVSGYIETLLQHDQLEEAHDAAKQLKHIFGEGHVYIALQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +  D     ++  ++ + ++PLVAT +  +++ ED  A+  L A+     + + +  R 
Sbjct: 167  FQQ-DESLAGKLRDVSKSADIPLVATGDVHYINLEDKTAYMCLKAIKAGQQLPEVEEDRA 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + + +   EM   ++   E L  TVEIA RC   L +    LP +   +    Q   +
Sbjct: 226  --EKHFRTFEEMKEWYTQDTELLSRTVEIADRCEVDLNLGQTKLPSYPTPD----QSTAD 279

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR   V G++ R      A       Y +RL++EL++I +M FS YFLIV DF+++A 
Sbjct: 280  QFLRKVCVEGMKQRKIASNDA-------YVKRLEYELSIIQKMNFSDYFLIVWDFMKYAH 332

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I  GPGRGS AGS+ AY L ITD+DPLR  LLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 333  DQGIVTGPGRGSAAGSLVAYVLFITDVDPLRHGLLFERFLNPERISMPDIDIDFPDTRRD 392

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+I YV++KYG   VAQI+TFG+L AKAALRDVGR + +     DRL KLIP+ P   + 
Sbjct: 393  EIISYVKDKYGDMHVAQIVTFGTLAAKAALRDVGRVMGIDSKAADRLAKLIPSKPGTTLK 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+A     +        + ++ + + K+EGL RH STHAAG+V+ + PL+++VP+ +D
Sbjct: 453  -EALAASPELKAMLQQSEELRQVFQTALKVEGLPRHTSTHAAGVVLSEEPLTEIVPI-QD 510

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
                + +TQ+ M ++E  GL+K DFLGL+ LTL++   + +  Q  V ++ S I ++D +
Sbjct: 511  GHDGVYLTQYAMNYLEDLGLLKMDFLGLRNLTLIESIKNQIERQENVHINFSDISYEDQK 570

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL+   T GIFQLES GMRQ L  ++P  +EDI+A+ +LYRPGP++NI ++ +RK+G
Sbjct: 571  TFELLSAGDTTGIFQLESQGMRQVLRRLKPSSLEDIVAVNALYRPGPMENIPLFIDRKHG 630

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            + K+   HP +  +LK+T GVI+YQEQ+M IA  ++G+ L EAD+LRRA+ KK K+ +D+
Sbjct: 631  RVKVSYPHPDLYDILKDTYGVIVYQEQIMLIAAKMAGFQLGEADLLRRAVSKKDKKVLDE 690

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ G  K      IA ++++L+ KFA+YGFN+SHA AY++I +Q A++K HYP+ F
Sbjct: 691  ERSHFVEGCLKKEYPVNIANDVYDLIVKFANYGFNRSHAVAYSMIGFQLAYLKAHYPLYF 750

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N +K+ ++  +A++  I ++ PS+N     F V    I YSL AIK VG 
Sbjct: 751  MCGLLTSVIGNEDKVAQYFYEAKEKGISVLKPSINKSEFPFTVEKGEIRYSLRAIKNVGV 810

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +  + I  A  +KPF+ L DFC+RV +K +NR+ +E+L+F+GA+D    +R  LL S+D 
Sbjct: 811  SAVKDIYRARQEKPFEDLFDFCARVSAKSVNRKTIEALIFSGAMDELYPNRASLLASIDI 870

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
               +  ++     N  + +      TFS K    +          + E+  LG Y S HP
Sbjct: 871  ALDHVSFL-----NPDDQLDFLGDTTFSIKPKYAEIEELPLVDLLQFEKEALGLYLSNHP 925

Query: 968  LDVYKPILRKMGIKGYEESVATIR-----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            +  Y+  LR+ G      +V  IR        + +  ++   +  +T+ G  + ++TF +
Sbjct: 926  VQAYRDRLRENG------AVDIIRLSSYIKRKVSMGGLLTKVKSIRTKNGQSMAFITFGD 979

Query: 1023 PAKEYEANFFP 1033
               E E   FP
Sbjct: 980  ETGEMEGVVFP 990


>gi|223939595|ref|ZP_03631470.1| DNA polymerase III, alpha subunit [bacterium Ellin514]
 gi|223891753|gb|EEF58239.1| DNA polymerase III, alpha subunit [bacterium Ellin514]
          Length = 1224

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/1059 (37%), Positives = 599/1059 (56%), Gaps = 63/1059 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSLL+GA  L+ ++DK    + P++AITD   LF A++F + A   GI+PI
Sbjct: 6    FVHLHLHTEYSLLDGACRLDRLMDKAHELKFPSLAITDHGVLFGAIDFYKAARDKGIKPI 65

Query: 71   IGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IGC++ +    +   K  N G+  +     +VLL     GY+ LI+LV+  +L  +G   
Sbjct: 66   IGCEVYVAPHSRTEKKSANGGRDVYN---HLVLLAKDEIGYKNLIKLVTAAHL--EGYYY 120

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
                   +     EGLI L+G  +  I  A   ++ Q A   +  FK+  G +  Y+ LQ
Sbjct: 121  KPRIDKEILAANKEGLIALSGCLASEIPEAIMKDNLQKARDGIDWFKQTLGAENFYLELQ 180

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++ +    ++  A    L LVA+N+  ++ +    AHD L+ +   T ++   R 
Sbjct: 181  NHGIPEQAKVNKHLIPWAKEFGLKLVASNDVHYIEKGHSHAHDCLICIGTQTQLADTKRM 240

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ---VHAPIL--PRFIEKE- 299
            + V    YL++  EM + F+++PEA++NT+E+A +C+  ++   +H P+   P    +E 
Sbjct: 241  KYVEEQFYLRSAEEMKARFAEIPEAVQNTLEVAEKCNLEVEFGKLHYPVFDPPEAYTREG 300

Query: 300  ------CDDIQKEEENELRNKA----VAGLE--VRL----AQGAIAK------GYHAQD- 336
                   + + +     +R +     V G++   RL     Q   AK      G+H  + 
Sbjct: 301  YLRKLLAEGLHRRYTMHVRAEGQEFIVEGIDDARRLPTYKVQSPDAKVQGNGNGHHVDEP 360

Query: 337  ---------------YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                              RL  EL VI +  F  YFLIV DF+++ ++  I     RGS 
Sbjct: 361  ITNLEDPAVKEAVKAVIDRLQMELKVIEKTGFISYFLIVGDFVRYGREQGISC-VARGSA 419

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            AGS+  Y L I ++DP+R++LLFERFLNP+R++ PD DIDF  DRR +VI YV+ KYG+ 
Sbjct: 420  AGSLVTYLLEIANVDPIRYALLFERFLNPERVNPPDIDIDFADDRRADVIEYVRKKYGNS 479

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
             VAQI+TFG++ AK+ LRDVGR + + Y   DRL K+IPN+    +  +A+      + A
Sbjct: 480  SVAQIVTFGTMGAKSVLRDVGRVMGLGYGDCDRLAKMIPNELKMDLH-KALKQSPDLKAA 538

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
               +     L++ +  LE + R++S HAAG+VIGD+PL  L+P+ +D    L VTQ+ M 
Sbjct: 539  YDTEEVTRELIDTAFALEDITRNSSVHAAGVVIGDQPLVNLLPLKQDEEGTL-VTQYAMN 597

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
             + + GL+K DFLGLKTLT+++ + + + A +GV V +  +P DD +TY LL    TLG+
Sbjct: 598  PVGELGLLKMDFLGLKTLTVIRNTCEMIKATKGVDVPIDNLPLDDKKTYDLLNNARTLGV 657

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQLES GMR      Q   +E I ALV+LYRPGP+D I  +  R++G+ KI   HPL++ 
Sbjct: 658  FQLESGGMRDLCRKFQIGSVEHITALVALYRPGPMDLIPEFIKRRHGEVKIEYEHPLLEK 717

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG-ASKN 739
            +  ET G+++YQEQVMQ AQ L+GY+L  AD+LRRAMGKK  EEM KQ+E F+ G AS N
Sbjct: 718  ICSETYGIMVYQEQVMQAAQYLAGYTLGGADLLRRAMGKKKVEEMQKQRETFVKGAASIN 777

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
             I    A  IF+LL KFA YGFNKSHAAAYA+++YQTA++K +YPVEFL+A MT +M + 
Sbjct: 778  KIPAAKANQIFDLLEKFAGYGFNKSHAAAYAIVAYQTAYLKANYPVEFLSAMMTNDMADT 837

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVGTTTARHIMEA- 856
             K+ +F  +AR   I+++PP VN   V F    N   I + LAAIKGVG    + I++A 
Sbjct: 838  SKLTEFIAEARSMGIEVLPPDVNESQVAFAPARNGEVIRFGLAAIKGVGEIAVQSILDAR 897

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
             A   F SL D C RVD + +NR+VLE+L+ +GA D F  +R  +   +D     A  + 
Sbjct: 898  KAGGEFTSLGDMCQRVDIRTVNRKVLEALIKSGACDAFKETRSTMYAHIDKALTRAAGII 957

Query: 917  KNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            ++R     ++F   +    DK   + K          + E+ +LGFY +GHP++ Y P+L
Sbjct: 958  QDRQRGQSSMFDMLEENREDKPEVVAKLPEWPEHELLQAEKELLGFYVTGHPINPYVPLL 1017

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
             K  +    E          R+  +V   QQ  ++K ++
Sbjct: 1018 EKYALTKIAELPKLENRALTRIGGLVSVVQQGVSKKSNK 1056


>gi|33240201|ref|NP_875143.1| DNA polymerase III subunit alpha [Prochlorococcus marinus subsp.
            marinus str. CCMP1375]
 gi|33237728|gb|AAP99795.1| DNA polymerase III alpha subunit [Prochlorococcus marinus subsp.
            marinus str. CCMP1375]
          Length = 1168

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1054 (37%), Positives = 613/1054 (58%), Gaps = 48/1054 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +     GI+PI
Sbjct: 3    FVPLHNHSDYSLLDGASQLPLMVARAKELGFPALALTDHGVMYGAIELLKLCKKEGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IG ++ +       +      P P       +V+L   + GY+ L++L +  +L     +
Sbjct: 63   IGNEMYV-------INGSISDPQPKKEKRYHLVILAKNSTGYKNLVKLTTISHLKGMRGR 115

Query: 128  SV--RICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +  R C+   L +  +EGLI+ T    G I +A       VA++    +K +FG+  Y+
Sbjct: 116  GIFSRACIDKDLLKKYSEGLIISTACLGGEIPQAILRGRLDVAKEVANWYKNVFGEDFYL 175

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +Q H    DR     + ++A    + LVATN++ +L+E D EAHD L+ V    +V  +
Sbjct: 176  EIQDHGSIEDRIVNVAISKIANELNIELVATNDAHYLTENDVEAHDALLCVLTGKLVKDE 235

Query: 244  DRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIE 297
             R R T   YLK+ S+M ++F D      + +A++NT+ +A +      +    +P+F  
Sbjct: 236  KRLRYTGTEYLKSESQMKNLFVDHLDEEVVTKAIKNTLMVASKVEEYSILGNYKMPKFPV 295

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E +         L + +V GL  +L   +I       +Y +RL  E+ +I  M F  YF
Sbjct: 296  PEGN----TPIEYLESVSVNGLLEKLKLDSI--DLIDNEYSERLSTEIKIIEEMGFPTYF 349

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+V D+I++A++ +IPVGPGRGS AGS+ AY+L IT+IDP++  LLFERFLNP+R SMPD
Sbjct: 350  LVVWDYIKFAREQSIPVGPGRGSAAGSLVAYSLGITNIDPVKNGLLFERFLNPERKSMPD 409

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D DFC +RR+EVI YV   YG ++VAQIITF  + +KA L+DV R L +PY + D+L K
Sbjct: 410  IDTDFCIERRNEVIDYVTRMYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYREADQLAK 469

Query: 478  LIPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            LIP     P  L A+    +  S FR+    DP V + ++++ ++EG  +    HAAG+V
Sbjct: 470  LIPVVRGKPAKLDAMISKNSPSSEFRDKYEKDPLVKKWIDMAIRIEGTNKTFGVHAAGVV 529

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR- 592
            I   PL +LVP+ ++    + +TQ+ M+ IE  GL+K DFLGLK LT+L+++++ + +  
Sbjct: 530  IASDPLDELVPLQKNNDGQV-ITQYFMEDIESLGLLKMDFLGLKNLTMLERTVNLVEKSI 588

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G +VDL  +  +D +TY LL+     GIFQLESSGMRQ +  +QP  +EDI ++++LYRP
Sbjct: 589  GERVDLDELSLEDKKTYELLSRGDLEGIFQLESSGMRQIVRDLQPSSLEDISSILALYRP 648

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+D  ++  + NRK+G+E I   H  + P+L ET G++IYQEQ+M+IAQ L+GYSL +A
Sbjct: 649  GPLDAGLIPKFINRKHGREAIDFPHASLAPILGETYGIMIYQEQIMKIAQDLAGYSLGQA 708

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK   EM K +  FI GA K G+   IA  +F+ +  FA+Y FNKSH+ AY 
Sbjct: 709  DLLRRAMGKKKVSEMQKHRGFFIDGAKKKGVDSKIASELFDQMVLFAEYCFNKSHSTAYG 768

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++YQTA++K HYPV ++AA +T+   + +KI+++  +     I++MPP +N+  +DF  
Sbjct: 769  AVTYQTAYLKAHYPVAYMAALLTVNSSSTDKIQRYISNCNSMGIEVMPPDINSSGIDFTP 828

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +NRI + L+A++ +G    R +++A   D  F SL D C R+ S  LNRR LESL+  G
Sbjct: 829  LENRILFGLSAVRNLGDGVIRQLIKARVNDGLFLSLADLCDRIPSNILNRRSLESLIHCG 888

Query: 890  ALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSV 945
            ALD F    +R QL++ LD I  +A    ++R +   N+F  + EK   SD  +  +  +
Sbjct: 889  ALDAFHPESNRAQLVKDLDLIIDWAGARARDRASGQGNLFDLSSEKEEKSDISSAPQGPI 948

Query: 946  ---ENSSVRFENEQRVLGFYFSGHPL-DVYKP--ILRKMGIKGYEESVATIRGNNIRLAA 999
                + + + + E+ +LGFY S HPL  + +P  ++  + +   ++       + + + A
Sbjct: 949  VKDYHPTEKLKLEKELLGFYLSDHPLKQLSEPAKLIAPISLINLDDQRDK---SKVSVIA 1005

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            M+   +   TRKG ++  +   +     EA  FP
Sbjct: 1006 MIKEMRIVNTRKGDKMSILQIEDLTGSCEAVVFP 1039


>gi|166032119|ref|ZP_02234948.1| hypothetical protein DORFOR_01822 [Dorea formicigenerans ATCC 27755]
 gi|166027842|gb|EDR46599.1| hypothetical protein DORFOR_01822 [Dorea formicigenerans ATCC 27755]
          Length = 1156

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1052 (37%), Positives = 591/1052 (56%), Gaps = 49/1052 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      ++AITD   +F  ++F + A A GI+P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKECVARVKELGMNSVAITDHGCMFGVIDFYRAARAQGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G         +VLL    EGY  L+++VSR Y  +      
Sbjct: 62   ILGCEVYVAPGSRFDKEAVGSGD-DRYYHLVLLAENDEGYHNLMKIVSRGYT-EGYYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+ L  L+E   EG+I L+   +G + +              L ++++FG    ++ LQ 
Sbjct: 120  RVDLELLREF-HEGIIALSACLAGEVQKNITRGMYSEGRAAALRYEEIFGKGNFFLELQD 178

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++   +Q +++++    + LVATN+  +   ED  AHD+L+ +     ++ +DR R
Sbjct: 179  HGIPEQQTVNQALMRMSQETGIELVATNDIHYTYAEDARAHDILLCIQTGKKLADEDRMR 238

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM  +F    +ALENT +IA RC   ++     LP++     D     
Sbjct: 239  YEGGQYYIKSEEEMKKLFPYALQALENTQKIADRCDVEIEFGVTKLPKY-----DVPDGL 293

Query: 307  EENELRNK-AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               E  NK    GLE R           +QD + RLD+EL+VI +M +  YFLIV DFI 
Sbjct: 294  SSWEYLNKLCYEGLERRYPN-------PSQDLKDRLDYELSVIHKMGYVDYFLIVWDFIH 346

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I VGPGRGSGAGS+ AY L IT IDP+++ LLFERFLNP+R+SMPD D+DFC +
Sbjct: 347  YARSQKIMVGPGRGSGAGSIVAYCLEITSIDPIKYQLLFERFLNPERVSMPDIDVDFCYE 406

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV  KYG +RV QI+TFG+L A+  +RDVGR + +PY+ VD + KLIP +   
Sbjct: 407  RRQEVIDYVGRKYGADRVVQIVTFGTLAARGVIRDVGRVMDLPYAFVDNIAKLIPKELNI 466

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+   S  R++   DP V  L+++S +LEGL RH S HAAG+VI  +P+ + VP+
Sbjct: 467  TLD-KALKTSSELRKSYEEDPQVKELIDMSMRLEGLPRHTSMHAAGVVISQKPVEEYVPL 525

Query: 546  YRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPF 603
               + SD  V TQF    +E+ GL+K DFLGL+TLT+++ +  F +   G +++++ I F
Sbjct: 526  --SLGSDGSVTTQFVATTLEELGLLKMDFLGLRTLTVIRDAEKFASYSSGKEININKINF 583

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD      + T  T G+FQLES+GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y  
Sbjct: 584  DDKAVLDSIGTGKTDGVFQLESAGMKNFMKELKPQSLEDIIAGISLYRPGPMDFIPQYIK 643

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             K   E I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D++RRAM KK  +
Sbjct: 644  GKEHPELITYDCPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKAD 703

Query: 724  EMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
             M K+++ F+ G  +        NGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQ
Sbjct: 704  VMAKERQNFVYGNPEEGVPGCIANGIDEKTANKIYDEMTDFAKYAFNKSHAAAYAVVSYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TAW+K +YPVE++AA MT  +DN  K+ ++    RQ  I+I+PP +N     F V +  I
Sbjct: 764  TAWLKYYYPVEYMAALMTSVIDNPGKVAEYIYSCRQMGIKILPPDINHGYSSFSVDNGSI 823

Query: 836  YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y LAAIK +G    + I+ E  A+  F +L+DF  R+  K +N+R +E+ + +GA D  
Sbjct: 824  RYGLAAIKSIGRPVIKEIVAERKANGEFKNLKDFIERMSGKDINKRTIENFIKSGAFDEL 883

Query: 895  GYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            G +R Q +    Q LD + +  +     +    + +   +K  F   I L        S 
Sbjct: 884  GGTRKQFMVIYVQILDQVNREKKNSMTGQMTLFDIVGEEQKSEFD--IPLPNVGEYEKST 941

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKG------YEESVATIR---GNNIRLAAMV 1001
            +   E+ VLG Y SGHP++ Y+   RK GI        ++E +   R   G    +  ++
Sbjct: 942  KLAFEKEVLGIYLSGHPMEEYEEQWRK-GISKTTQDFQFDEELGFSRVSDGAAEIIGGII 1000

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             SK  K T+    + ++T  +     E   FP
Sbjct: 1001 ASKTIKYTKNNKTMCFLTIEDIMGSVEVVVFP 1032


>gi|188996572|ref|YP_001930823.1| DNA polymerase III, alpha subunit [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931639|gb|ACD66269.1| DNA polymerase III, alpha subunit [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 1165

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/1054 (37%), Positives = 598/1054 (56%), Gaps = 48/1054 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +HS YSLL+G +    +  K       A+ +TD  N+F A+EF ++    G++P+
Sbjct: 5    FVHLHLHSHYSLLDGMIKPKELAKKAVEYGYKAVGLTDHGNIFGAVEFYEEMRKVGVKPL 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IG +      +  +   +G     T  +  ++L      G++ L++L S  Y   +G   
Sbjct: 65   IGME-SYFTNNRFEKKGEGSDDILTDKNYHLILFAKDKTGFKNLMKLSSIAYT--EG-FY 120

Query: 129  VRICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             +  + W L E   EGLI  T    G +         + A+K     K +FG+ LY  +Q
Sbjct: 121  YKPRIDWELLEKYHEGLICQTACLKGFVPNLLAQGKYEEAKKYAKRLKDIFGEDLYFEIQ 180

Query: 188  RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV----SQ 242
             +   ++   ++ +++LA    + +V TN+S +L+ ED+ AHDV+ A+     +    S+
Sbjct: 181  VNGLEEQNIANEGIIRLAKELGVKVVGTNDSHYLNPEDHTAHDVVKALQMKKTLKELYSE 240

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKE 299
                RV   H+ +   EM   F    E L+NT+EIA +C+  +   +    + P+F   E
Sbjct: 241  GKAFRVKGLHFTR-PEEMYEKFKGYEEYLKNTMEIAEKCNLEIDTAETRGYLFPKFETPE 299

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 +  E   R     GLE RL           ++YR+RLD+E+NVI +M F+ YFLI
Sbjct: 300  GMTPAQYFEKLARE----GLEKRLESIKDLTPEKLKEYRERLDYEINVINQMGFAEYFLI 355

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI +AKKN IPVGPGRGS  GS+ AY L IT++DPL+  LLFERFLNPDR+SMPD D
Sbjct: 356  VQDFINYAKKNGIPVGPGRGSAGGSLVAYCLRITEVDPLKHGLLFERFLNPDRISMPDID 415

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC +RR++VI YV+ KYG + VAQIITF  +++K  +RDV R L  PY + D++ K+I
Sbjct: 416  VDFCMERREKVIDYVKQKYGEDSVAQIITFNFMKSKMVIRDVARTLGFPYQEADKIAKMI 475

Query: 480  PNDPAHPVSL---QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
               P    +L   + +     F++    D  V  LL++++KLEG  RH   HAAGIVI  
Sbjct: 476  LPGPIQGSTLTIDENLEAHPDFKKLYETDEKVRELLDLARKLEGSARHTGIHAAGIVIAP 535

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVK 595
              L + VP+YRD   +   TQF MK +E+ GL+K DFLGLKTLT L      + +R G+ 
Sbjct: 536  GTLDEYVPVYRDKDGN-RATQFEMKTLEQLGLVKMDFLGLKTLTELDYMKKLIKERHGID 594

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD + +PFDD   + LL +  T G+FQLES GM+  L  ++P  +++IIA+++L+RPGP+
Sbjct: 595  VDYNSLPFDDENVFKLLQSGRTTGVFQLESKGMQDLLVRLKPSNLDEIIAILALFRPGPL 654

Query: 656  DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             + +V  Y  RK+G++ I      +  +LKET G+I+YQEQ+M ++ +LSG++++EAD L
Sbjct: 655  MSGMVDEYIERKHGRKPIEYPFEEVKDILKETYGLIVYQEQIMFMSNILSGFTMAEADTL 714

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+A+GKK  E M K K+RFI GA + G SK     +++ + KFA Y FNKSH+ AYA ++
Sbjct: 715  RKAIGKKNPEVMAKMKDRFIGGAVERGFSKEKVEKLWDDIEKFASYSFNKSHSTAYAYLT 774

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD- 832
            Y TAW+KT+YP EF A  ++ E +N  K      D   FNI+++PP VN    +F + + 
Sbjct: 775  YWTAWVKTYYPEEFFAVKLSTE-NNDSKFLNLLLDMENFNIKLLPPDVNKSMPEFAIEEK 833

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            ++I + L+ IKG+G   A+ I+E   + PF  + DFC R D+K  N++VLESL+ AGA D
Sbjct: 834  SKIRFGLSRIKGIGEEVAKSIVEERKNGPFVDIFDFCERFDTKVANKKVLESLIKAGAFD 893

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-------HEKGTFSDKITLEKFSV 945
              G  R  LL++++      Q    +++    ++FA       + K  + D   L     
Sbjct: 894  FEGIDRGILLENVEKAITTGQKARDSKSAGQNSLFALTTTPVVNVKHIYEDGTKL----T 949

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIR----GNNIRLAA 999
            E   +R E E  VLGFY SGHPL+ YK  L+   +K  E  ES    +    G+ +++A 
Sbjct: 950  EKEKLRLEKE--VLGFYLSGHPLNAYKNELKNKVLKISEIMESAFGDKTFQSGSKVKIAG 1007

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++   + KKT+ G+ +     S+   + +   FP
Sbjct: 1008 VIDEIKYKKTKSGATMIVFQISDETGQMDVRAFP 1041


>gi|309389826|gb|ADO77706.1| DNA polymerase III, alpha subunit [Halanaerobium praevalens DSM 2228]
          Length = 1118

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/1038 (36%), Positives = 606/1038 (58%), Gaps = 45/1038 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  H+++SLL+GA  ++++++K    + PA AITD   L+  ++F +KA   GI+P
Sbjct: 3    NFVHLHNHTAFSLLDGATRIDSLIEKTKKYEMPAAAITDHGVLYGMIDFYRKAKKEGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +      +   +          ++LL    +GY  LI+LVS+ +L +      
Sbjct: 63   IIGAELYLASGSRFEKNRKRY-------HLLLLAQNKQGYYNLIQLVSKAWL-EGFYYKP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L +  ++GLI L+    G I +        +A+K    ++ +FG +  ++ LQ 
Sbjct: 115  RVDKELLAKY-SDGLICLSACLQGEIPQLLIKGQYDLAQKAAADYRAIFGKNNFFLELQD 173

Query: 189  HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            H   +  +E +V Q    L+    +P V TN+S +L++ED E  D+L+A+   T ++ ++
Sbjct: 174  H---NLQKEKEVAQGLLKLSQAENIPTVITNDSHYLNQEDAELQDILLALQTGTTLADEN 230

Query: 245  RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R   T  + Y K+  EM  +F +L  A +NTV+IA R    L  +   LP++      D+
Sbjct: 231  RMTFTGQEFYYKSPKEMKKLFPELNSAYQNTVKIADRVELNLDFNHFYLPKY-----PDL 285

Query: 304  QKEEENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             KE+  E  L+     GL+ +    + AK       R+RL +ELN+I  M ++ YFLIV 
Sbjct: 286  GKEKSAEELLQKLCFEGLKAK-EMDSDAKA------RKRLKYELNIIFEMGYAAYFLIVY 338

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF+++A+ N I VGPGRGS AGS+ AY L IT ++PL++ L+FERFLNP+R++MPD DID
Sbjct: 339  DFVKYAEDNGIMVGPGRGSAAGSLVAYLLKITKVNPLKYGLIFERFLNPERVTMPDIDID 398

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F ++R D++I YV+ +YG ERVAQI TFG++ A+AA+RDVGR L +PY +VD++ KLI +
Sbjct: 399  FDENR-DQIIEYVKKRYGKERVAQIGTFGTMAARAAIRDVGRVLALPYKKVDQVAKLISS 457

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                  SL++     + ++    D  +  L++ ++ +EGL RH STHAAG++IG  PL+Q
Sbjct: 458  RKGIKASLKS---QEKLQQLYQRDSQIKELIDYARGVEGLPRHISTHAAGVIIGAEPLAQ 514

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            +VP+ +  +S   +TQ  M  +E  GL+K DFLGL+ LT+++  L  + + +G K+D+  
Sbjct: 515  IVPLQKQDQS--VITQLPMGDLEALGLLKMDFLGLRNLTVIKNCLQLIEKHKGKKIDIDN 572

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP  D + Y  L+T  T G+FQ+ES   +   + M+P+   D+IA+++L RPGP+ + +V
Sbjct: 573  IPLTDKDVYDFLSTGKTAGVFQMESYLFQSLNKKMKPEKFNDLIAMLALGRPGPLGSNIV 632

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   ++GK++   +HP + P+L+ET G+I+YQEQVM+IA  L+GYS+ EAD+LRR MG
Sbjct: 633  DDFIAIRHGKKEAEYLHPKLKPILEETFGMILYQEQVMEIASSLAGYSMGEADLLRRGMG 692

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  + +  ++E+F+ GA   GI + IA  IF+ +  FA YGFNKSH+ AYA ++YQTA+
Sbjct: 693  KKKLKLVAAEREKFVKGAVARGIQENIAQKIFDQMEYFAGYGFNKSHSTAYAFLAYQTAY 752

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYY 837
            +K HYP EF+AA  +  M N +KI  +     +  ++I+PP +N    +F    DN I Y
Sbjct: 753  LKYHYPAEFMAALFSSVMGNQDKIADYINSLAEIGLKIIPPDINRSDHNFTAANDNEILY 812

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L AIK VG+     +++A   + F SL DF  RVD  ++N + LE+ V AGA D    +
Sbjct: 813  GLKAIKNVGSAAIEAVIKARKSEKFKSLVDFLKRVDISQINIQSLEAFVKAGAFDEIAVN 872

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHEN---IFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            R  LL + + +      + KNR    ++   +F  +       +  +K     +    E 
Sbjct: 873  RASLLLNYEELYNKYNNLAKNRAQGQQSFAELFEDQNKFMQTDLKYQKVDELKTETILEQ 932

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LG Y S HPLD Y+  L K+      +++    G  +  AA + + ++  T++ ++
Sbjct: 933  EKEFLGIYISAHPLDQYQAKLDKINFYSINKALTVDSGKKVLTAAYLSNYKEHITKRKNK 992

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + ++T S+   + E   F
Sbjct: 993  MAFLTVSDHQDKMEVIVF 1010


>gi|2073511|emb|CAA72479.1| DNA polymerase III alpha subunit [Rickettsia prowazekii]
          Length = 780

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/803 (43%), Positives = 495/803 (61%), Gaps = 50/803 (6%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P F+HL+  SSYS LE AL++  +++     + PA+ ++D  NLF +LEFS  A    +Q
Sbjct: 3   PEFIHLRTQSSYSFLESALTIEKVVELALLHKMPALCLSDRGNLFGSLEFSLYAVKKKLQ 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PI G  L+I    N                I+L+     GY+ L++L S  +     K  
Sbjct: 63  PIHGVILNIQYDIN------------AFAQILLIAKDETGYKNLLKLSSLTF----TKND 106

Query: 129 VRICLSWLQEIG-------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
            +IC    + IG        EG+I L   + G + +       + A       + + GDR
Sbjct: 107 RKIC----EHIGFEDLIKYQEGVIALCCYTDGIVGKCLLARKQEQAILFARRLQAILGDR 162

Query: 182 LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            Y  + RH    +++ E+  +Q+A    +P+VATN  LF  +  + AHDVL+ ++     
Sbjct: 163 FYFEIMRHDLPEEQFIENSYIQIASELSIPIVATNKVLFSEKSMHYAHDVLLCISEGVTK 222

Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              DR  V+ + Y K+ +EM  +FSDLP A++NT+ +  RC F    + P+LP F     
Sbjct: 223 EYPDRKTVSENCYFKSPAEMRKLFSDLPNAIQNTINLRERCYFAAHPNPPMLPNF---ST 279

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKF 353
            DI   E   +R  A  GL  RL     A+    +       +Y  RL++EL++I  M F
Sbjct: 280 QDIS--ETYLIRKYATEGLLARLVTKFKAENISLEHQEKLKTEYFTRLNYELDIICNMNF 337

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
           +GYFLIV+DFI+W+KK  I VGPGRGSGAGSV A++L +TD+DP++F LLFERFLNP+R+
Sbjct: 338 AGYFLIVSDFIKWSKKQGILVGPGRGSGAGSVVAWSLLVTDLDPIKFGLLFERFLNPERI 397

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
           SMPDFDIDFCQ+RR+EVI YV++KYG  RV QIITFG +QAKA ++DV R L +PY   D
Sbjct: 398 SMPDFDIDFCQERREEVINYVRSKYGPNRVGQIITFGKMQAKAVIKDVARVLSLPYKLAD 457

Query: 474 RLCKLIPNDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYR 523
            L +L+P    +PVSL QAI +      A   +           +  +L+ S  LEGL+R
Sbjct: 458 YLTELVPFSAINPVSLEQAIREVPELANAAKGNGLYNLEGDAELIKLVLDTSLILEGLHR 517

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
           H+STHAAGIVI    L  +VP+Y+D  +D+ +  ++MK+ E AGLIKFDFLGL+TLT++ 
Sbjct: 518 HSSTHAAGIVIAGTDLVDIVPVYKDANADMLIVGYSMKYSEIAGLIKFDFLGLQTLTVIT 577

Query: 584 KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
                L ++G+K+D   + FDD +TY +L     +G+FQ ES GM+ AL  ++PD I D+
Sbjct: 578 NCKKLLKEQGIKIDFDDMTFDDKKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDL 637

Query: 644 IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
           IAL +LYRPGP++NI  Y   K+  ++   +H L++P+L+ET GV+IYQEQV +IAQ+L+
Sbjct: 638 IALGALYRPGPMENIPTYIACKHKLQQPDYLHKLLEPILEETYGVVIYQEQVQRIAQVLA 697

Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
           GY+L  AD+LRRAMGKKIK+EM++Q+E F+ GA  N IS + A +IF  +AKFA YGFNK
Sbjct: 698 GYTLGAADLLRRAMGKKIKKEMEEQEEIFVKGAIANNISPSQAKSIFSTVAKFAGYGFNK 757

Query: 764 SHAAAYAVISYQTAWMKTHYPVE 786
           +HAAAY VISYQTA++K +YP E
Sbjct: 758 AHAAAYGVISYQTAYLKANYPAE 780


>gi|154174535|ref|YP_001407866.1| DNA polymerase III subunit alpha [Campylobacter curvus 525.92]
 gi|112803372|gb|EAU00716.1| DNA polymerase III subunit alpha [Campylobacter curvus 525.92]
          Length = 1201

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/1048 (35%), Positives = 605/1048 (57%), Gaps = 53/1048 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  +  +   +      + AITD  N+F A++F +     GI+P+
Sbjct: 4    FTHLHLHTEYSLLDGANKIKELAHVLHERGDTSAAITDHGNMFGAIDFYKTMKKEGIKPL 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  I   D+L     G         ++L+     GY+ L+ L S  Y+ +      R
Sbjct: 64   IGIEAYIHNADDL-----GDKSSKQRFHLILIAKNETGYKNLMYLSSMSYI-EGFYYYPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPI-------DRAFFFNSS--QVAEKRLLTFKKLFGDR 181
            I    L+E  +EG+I  +    G +       +R   + +   + A++  L +K++FGD 
Sbjct: 118  INKKILKE-HSEGIICSSACLQGEVSWHLNLSERNLKYGAKGYEKAKEVALEYKEIFGDD 176

Query: 182  LYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ + RH   D+ R +  ++++A    + ++ATN++ +  +E  +AH+V M +A + ++
Sbjct: 177  FYLEIMRHGIGDQRRIDDDILRIAKETGIKVIATNDTHYTFKERADAHEVFMCIAMNKLL 236

Query: 241  SQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---- 295
               +R R +  + ++K+  EM  +F D+PE +ENT EI ++C+  +++  P  P F    
Sbjct: 237  DDPNRLRHSVHEFFVKSEDEMKRLFLDIPEVIENTKEIVQKCNLEIKLGNPTPPNFKFTL 296

Query: 296  ---IEKECDDIQKEEENELRNKAV-------AGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                E+  +  + +     +N  V        GLE RL    + +  H ++Y++RL+ E+
Sbjct: 297  ECAAERGLNLPEPKNRYSFKNDTVFFEYECKKGLEERLK--FVPENLH-EEYKKRLEREI 353

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             +I +M FSGY +IV DFI  AK   +PVGPGRGS AGS+ AY+L ITD+DP+ ++LLFE
Sbjct: 354  EIINKMNFSGYMMIVWDFINEAKSRGVPVGPGRGSAAGSLVAYSLKITDLDPIPYNLLFE 413

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+SMPD D+DFCQ RR E+I YV  KYG   VA +ITFG L AK  +RDV R  
Sbjct: 414  RFLNPERVSMPDIDVDFCQSRRGEIIDYVTQKYGKYNVAGVITFGKLLAKGVIRDVARVC 473

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
             MPY++ D + KLIP++    ++L+ A   + + +E    +P   ++ + +  LEGL R+
Sbjct: 474  DMPYAEADAMAKLIPDELG--ITLKDAFEKEPKIKELIDKNPKAAKIWKFALDLEGLNRN 531

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRS--DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L    P++R   S  D  VTQ+++K++E   LIKFDFLGLKTLT++
Sbjct: 532  AGQHAAGVVISNEELWHKTPLFRQPNSPEDRYVTQYSLKYLEDVDLIKFDFLGLKTLTVI 591

Query: 583  QKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R G  V    I  +D   Y ++ +   +GIFQ+E  GMR+    ++PDC E
Sbjct: 592  DNAIKLVKRRTGKDVIWEQIDKNDKPVYDMIQSGQAIGIFQIEGEGMRKLGTSLRPDCFE 651

Query: 642  DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DI+A+++LYRPGP+++ ++  +  RK+G+  I      ++P+L  T GVI+YQEQVMQI 
Sbjct: 652  DIVAMLALYRPGPMESGMLDDFVKRKHGEAAITYAFKELEPILAPTYGVIVYQEQVMQIV 711

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q + G+SL  AD++RRAMGKK  E + +QKE F+ GA K G +   + ++F+L+ KFA Y
Sbjct: 712  QKIGGFSLGGADLVRRAMGKKDPELLRQQKELFVEGAKKEGFNVQKSGDLFDLILKFAGY 771

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA +++QTA++K +YP EF+AA +T E  NV+KI ++  ++++  I ++ P
Sbjct: 772  GFNKSHSAAYAYVTFQTAFLKAYYPAEFMAALLTSEESNVDKIVRYIDESKRLKIDVLAP 831

Query: 820  SVNTPCVDFKVGDN----RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDS 874
            S+N    +F V DN     I + L AIKGVG     +I+ E      F    D  SR+D+
Sbjct: 832  SINKSMKEFSVVDNGGHDGIIFGLGAIKGVGGAAIENIIAERERGGEFKDFNDLVSRIDA 891

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
             K+N++V ESL+ AG  D FG++R  LL +++NI +  +   + R N  +++F  ++   
Sbjct: 892  FKVNKKVFESLIKAGCFDEFGHTRKMLLANIENIIEACKNAAQIRKNAAQSLFGEDESMN 951

Query: 935  SDKITLEKFSVE---NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
              KI  +    E      ++FE E   +G Y SGHPLD Y+  + ++      E     +
Sbjct: 952  DVKINFDPVDGEYDIKQILKFEQES--VGIYLSGHPLDDYREKISQIKYTLSSEFENLPQ 1009

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
               I +   +     + T+ G ++G + 
Sbjct: 1010 SAEILVVGKIEDFSTRITKSGKKMGTIN 1037


>gi|300938591|ref|ZP_07153324.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           21-1]
 gi|300456473|gb|EFK19966.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           21-1]
          Length = 771

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/788 (44%), Positives = 501/788 (63%), Gaps = 34/788 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
           +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59  DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINRRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFLAASM 792
            EF+AA M
Sbjct: 764 AEFMAAGM 771


>gi|315285249|gb|EFU44694.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           110-3]
          Length = 772

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/787 (44%), Positives = 500/787 (63%), Gaps = 34/787 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
           +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59  DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKKGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFLAAS 791
            EF+AA 
Sbjct: 764 AEFMAAG 770


>gi|301025936|ref|ZP_07189420.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           69-1]
 gi|300395735|gb|EFJ79273.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           69-1]
          Length = 771

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/787 (44%), Positives = 500/787 (63%), Gaps = 34/787 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
           +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59  DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFLAAS 791
            EF+AA 
Sbjct: 764 AEFMAAG 770


>gi|291519904|emb|CBK75125.1| DNA polymerase III catalytic subunit, DnaE type [Butyrivibrio
            fibrisolvens 16/4]
          Length = 1161

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/1056 (36%), Positives = 586/1056 (55%), Gaps = 49/1056 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YSLL+G+  +   + K       A AITD  N++  ++F ++  AAGI P
Sbjct: 2    SFVHLHTHTEYSLLDGSNKIKAYVKKCVDMGMTAAAITDHGNMYGVIDFYKECKAAGINP 61

Query: 70   IIGCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++GC++ +           QG+  +     ++LL    +GYQ LI++VS+ Y+ D     
Sbjct: 62   VLGCEVYVAPGSRFDRERVQGEDHYY---HLILLAENNQGYQNLIKIVSKGYV-DGYYYK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-VNLQ 187
             R+    LQ+   +G+I L+   +G + RA        A+   L ++  FG+  Y + LQ
Sbjct: 118  PRVDFEILQQY-HQGIICLSACLAGEVARALNRGLYDEAKAVALKYRDCFGEGNYFLELQ 176

Query: 188  RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++   +Q +++L+    +PLVATN+  + ++ED ++HDVL+ +     +  +DR 
Sbjct: 177  DHGIEEQKNVNQGLMRLSRETGIPLVATNDCHYTNKEDADSHDVLLCIQTGKKLQDEDRM 236

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  T + Y+K+  EM+ +F    +A+  T EIA RC   ++     LP F   E  D   
Sbjct: 237  RFETSEFYVKSEEEMLQLFPYATDAIGRTQEIADRCHVEIEFGVTKLPHFEVPEGYD--- 293

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 L      GL+ R        G  A + + RL +EL VI  M +  YFLIV DFI 
Sbjct: 294  -SWTYLNKLCYEGLDRRY-------GDKASELKPRLKYELEVIKNMGYVDYFLIVWDFIN 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+ + IPVGPGRGS AGS+ +Y   IT+IDP+++SL+FERFLNP+R+SMPD DIDFC +
Sbjct: 346  YARTHGIPVGPGRGSAAGSLVSYTTGITNIDPMKYSLVFERFLNPERVSMPDIDIDFCYE 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV  KYG + V QI+TFG+L+A+  +RDVGR + +PY  VD + K+IP D   
Sbjct: 406  RRGEVIDYVIEKYGKDCVTQIVTFGTLKARGVIRDVGRVMDLPYGYVDSIAKMIPMDLGM 465

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+  +S  R    +D  V  L+++++ LEGL R+   HAAG+VI  +P+ + VP+
Sbjct: 466  TLD-KAMEANSELRAVYESDDQVKNLIDVARTLEGLPRNTGMHAAGVVIAGKPMDEYVPV 524

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
             R       VTQF M  IE+ GL+K DFLGL+TLT++  ++  + +  G+K+D+  I ++
Sbjct: 525  ARGADGSSIVTQFVMTTIEELGLLKMDFLGLRTLTVINDAVKLVEKNHGIKLDMDAIDYN 584

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D     +++     G+FQLES+GM+  ++ ++P  IEDIIA +SLYRPGP+D I  Y   
Sbjct: 585  DQGVMDMISAGKCEGVFQLESTGMKNFMKELKPHSIEDIIAGISLYRPGPMDFIPSYIKG 644

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            KN K+ IV   P ++P+L  T G I+YQEQVMQI Q L+GYSL  AD +RRAM KK +  
Sbjct: 645  KNAKDAIVYDTPELEPILAPTYGCIVYQEQVMQIVQQLAGYSLGGADEIRRAMSKKKQYV 704

Query: 725  MDKQKERFISGAS----------------KNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            +++ +E F++G                    GIS  +A  I++ +  FA Y FNKSHAAA
Sbjct: 705  IEENREIFVNGGQIENHITGKITQIPGCVSKGISSEVANGIYDHMVDFAKYAFNKSHAAA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YAV++ QTA++K +YP+EF+AA MT  +D   K+ ++    R   IQ++PP VN     F
Sbjct: 765  YAVVAIQTAYLKKYYPIEFMAALMTSVIDASGKVAEYIAVCRGNGIQVLPPDVNNGEGRF 824

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V  ++I Y L AIK VG  T   I+ +   +  +  LEDF  R+     N+R +E+L+ 
Sbjct: 825  SVDGDKIRYGLYAIKSVGRNTIDAIIYDREKNGTYRDLEDFIKRISKYDANKRTIENLIK 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKFSV 945
            AGALD    +R Q       I       +KN      ++  FA E+     KIT+ K   
Sbjct: 885  AGALDTMDGNRRQKCMVFPEILDSVNNKKKNEIEGQMSLFDFASEEQKEDLKITMPKVDE 944

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILR--------KMGIKGYEESVATIRGNNIRL 997
             +  +    E+ ++G Y SGHPLD Y  +L+        K  I      V+    + + +
Sbjct: 945  FDKEMLLAFEKELMGVYVSGHPLDDYISLLQKNVTAQANKFLIDEETGEVSVKDDSEVIV 1004

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              M+     K T++G  + ++T  +     E   FP
Sbjct: 1005 GGMITGITNKYTKQGKAMAFITIEDLTGTIEVIVFP 1040


>gi|254421416|ref|ZP_05035134.1| DNA polymerase III, alpha subunit subfamily, putative [Synechococcus
            sp. PCC 7335]
 gi|196188905|gb|EDX83869.1| DNA polymerase III, alpha subunit subfamily, putative [Synechococcus
            sp. PCC 7335]
          Length = 1175

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1072 (36%), Positives = 622/1072 (58%), Gaps = 74/1072 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  ++ ++D+       AIA+TD   ++ A+E  +     GI+P
Sbjct: 2    SFVGLHIHSDYSLLDGASHIDPLVDRALELGMDAIALTDHGVMYGAIELLKVCRKKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQS 128
            IIG ++ +   D   +T Q K P       ++L     GY+ L++L +  +L   QGK  
Sbjct: 62   IIGNEMYVINGD---ITKQEKRP---KYHQLVLAKNDIGYKNLVKLTTVSHLEGVQGKGL 115

Query: 129  V-RICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              R C++  L E   EGLI+ +    G I +A       VA +    +K L GD  Y+ +
Sbjct: 116  FSRPCINKDLLEQYHEGLIITSACLGGEIPQAILKKRLDVARRVAQWYKDLLGDDFYLEI 175

Query: 187  QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    DR    ++V++A   ++ +VATN+S F+S  D EAHD L+ +    ++S+  R
Sbjct: 176  QDHGSPEDRIVNVEIVRIAQELDIKIVATNDSHFISCVDVEAHDALLCIQTGKLISEDKR 235

Query: 246  PRVTPDHYLKNRSEMVSIFSD--LPEALENTV----EIARRCSFILQVHAPILPRFIEKE 299
             R +   YLK+ +EM  +F D   PE +E+ V    E+A +      +  P +P F   E
Sbjct: 236  LRYSGTEYLKSEAEMRRLFRDHIAPEIIEDAVSRTQEVADKVEEYNILGNPQIPNFPIPE 295

Query: 300  CDDIQKEEENELRNKAVAGL--EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                   +E+ +   A  GL   +RL+     +     +YR R+ +E+ ++ +M F+ YF
Sbjct: 296  G----HTKESYMEKVAWDGLLERMRLSN----REALTDEYRDRMAYEVAMMHQMGFATYF 347

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+V D+I++A+ +NI VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R SMPD
Sbjct: 348  LVVWDYIKFARDHNISVGPGRGSAAGSLVAYAMGITNIDPVHHGLLFERFLNPERKSMPD 407

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D DFC ++R++VI YV  KYG + VAQIITF  + +KA L+DV R L +PY++ D+L K
Sbjct: 408  VDTDFCIEKREKVIEYVTEKYGTDHVAQIITFNRMTSKAVLKDVARVLDIPYNESDKLAK 467

Query: 478  LIPNDPAHPVSLQA-IAD---DSRFREARLA-------DPSVDRLLEISQKLEGLYRHAS 526
            LIP     P  L   I+D   D+ F+E   +       + +  R ++ +  +EG  +   
Sbjct: 468  LIPVSRGKPTKLNVMISDKTPDATFKEKYDSGELIPGTNVTFQRWIDTAITIEGTNKTFG 527

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HAAG+VI + PL  +VP+ R+    + +TQ+ M+ +E  GL+K DFLGL+ LT++QK++
Sbjct: 528  MHAAGVVISEHPLDTIVPLQRNNDGSV-ITQYYMEDVEAIGLLKMDFLGLRNLTMIQKAV 586

Query: 587  DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            D +  R  +++DL  +P DD +TY LL      G+FQLESSGMRQ ++ ++P  +EDI +
Sbjct: 587  DHIESRHNIEIDLDALPLDDPKTYELLAGGELAGVFQLESSGMRQIVKELKPSGLEDISS 646

Query: 646  LVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            +++LYRPGP+D  ++  + +RK+G+EKI   H +++P+L+ET G+++YQEQ+M+IAQ L+
Sbjct: 647  VLALYRPGPLDAGLIPKFIDRKHGREKIDYAHKILEPILRETYGIMVYQEQIMKIAQDLA 706

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GYSL  AD+LRRAMGKK  +EM+  +E FI GA KN   +  A ++F+ +  FA+Y FNK
Sbjct: 707  GYSLGRADLLRRAMGKKKIKEMELHREEFIEGARKNEFPRKNANDLFDQMVLFAEYCFNK 766

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+ AY  +++QTA++K +YPVE++AA +T    + +K++ +        IQ++PP +N 
Sbjct: 767  SHSTAYGFVTFQTAYLKANYPVEYMAALLTAISGDQDKVQMYIASCLSMRIQVLPPDINR 826

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVL 882
              VDF   +N+I + L+A++ VG      ++++  ++ PF SL D C RVD + +N+R L
Sbjct: 827  SEVDFTPLENQILFGLSAVRNVGLGAIEALIKSREEEGPFKSLADLCDRVDLRAVNKRAL 886

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT--- 939
            E+L+ +GAL+    +R QL+  L+ + ++AQ   K+R     N+F    G  S++ T   
Sbjct: 887  EALILSGALESLEPNRQQLMHDLELVIEWAQSRAKDREVGQGNLFDMLGGGTSNEPTHTT 946

Query: 940  ----------LEKFSVENSSVRFENEQRVLGFYFSGHPL-------DVYKPI-LRKMGIK 981
                      +E +  +    R + E+ +LGFY S HPL        +  PI L ++G K
Sbjct: 947  TFESAPKAPPIEDYDPQE---RLKLEKELLGFYISDHPLKNIQHSAKILAPIELSELGEK 1003

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + +++ I         M+   +   T+KG  +  V   +     EA  FP
Sbjct: 1004 PEKVTLSAI--------VMLSMVKPVTTKKGDSMAVVQIEDLTGHAEAVIFP 1047


>gi|254779972|ref|YP_003058079.1| DNA polymerase III subunit alpha [Helicobacter pylori B38]
 gi|254001885|emb|CAX30135.1| DNA polymerase III alpha subunit [Helicobacter pylori B38]
          Length = 1211

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1040 (37%), Positives = 598/1040 (57%), Gaps = 75/1040 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  ++      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + P  P F       +KE  D + ++ +   +KA  GL+ RL    + K  H Q Y++RL
Sbjct: 294  NPPTPPSFKFTKAYAQKEGLDFE-DDASYFAHKAREGLKERLI--LVPKEKHDQ-YQERL 349

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ 
Sbjct: 350  EKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV
Sbjct: 410  LLFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSV----------DR 510
             R L MPY + D   KLIPN     ++L+    +  F E A   +P +           R
Sbjct: 470  ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNEVAKR 527

Query: 511  LLEISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            + E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LI
Sbjct: 528  VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587

Query: 570  KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            KFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SGM
Sbjct: 588  KFDFLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646

Query: 629  RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
             Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T
Sbjct: 647  FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPT 706

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     
Sbjct: 707  YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++
Sbjct: 767  AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856
              + R   I++MPP +N+   DF V          + +I + L A+KGVG    ++I+E 
Sbjct: 827  IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEE 886

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
             A   + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +   
Sbjct: 887  RAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944

Query: 917  KNRTNKH----ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            K++ N+      ++F    G   +++ L+       ++    E E   LG + SG+PLD 
Sbjct: 945  KDKANEMMQGGNSLFGAMGGGIKEQVVLDMTDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004

Query: 971  YKPILRKMGIKGYEESVATI 990
            +K       IKG++  V +I
Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019


>gi|228999385|ref|ZP_04158964.1| DNA polymerase III subunit alpha [Bacillus mycoides Rock3-17]
 gi|228760330|gb|EEM09297.1| DNA polymerase III subunit alpha [Bacillus mycoides Rock3-17]
          Length = 1096

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/1018 (36%), Positives = 595/1018 (58%), Gaps = 52/1018 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L+ A  ++ ++ +       +++ITD N ++  + F +     G++PIIG    +    
Sbjct: 1    MLKSACKIDELVSRAKELGFSSLSITDENVMYGVIPFYKACKKNGVRPIIGLTASV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                + + +  +P    +VLL     GYQ L+++ S +      K    I   WL     
Sbjct: 57   ---FSEEEEQSYP----LVLLAENEMGYQNLLKISSTI----MTKSKDGIPKKWLSHYA- 104

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQV 200
            +GLI ++ G  G I++       ++AE+    ++ +FG   Y++LQ H   D  + + ++
Sbjct: 105  KGLIAISPGKDGEIEQLLLQGRDEIAEEVARAYQNMFGS-FYMSLQHHAIQDELFLQEKL 163

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSE 259
             Q A    +P+VATN+  ++++ D    + L++V   T ++  DRPR+  D +YLK+ +E
Sbjct: 164  PQFANEINIPVVATNDVRYVNQSDALVQECLLSVQSGTKMTDPDRPRLKTDQYYLKSSAE 223

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M ++FS   EAL+NTV IA RC   +  H   LP+F             NE  +  +   
Sbjct: 224  MEALFSHAEEALQNTVCIAERCHVEIPFHVNQLPKF---------PVPSNETSDAYLR-- 272

Query: 320  EVRLAQGAIAKGYHA-QD-YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
              R+ +  + K Y A QD +R+RL+ EL VI+RM FS YFLIV DF+++  ++ I  GPG
Sbjct: 273  --RICEDGLNKRYGAVQDVHRKRLNHELEVISRMGFSDYFLIVWDFMKYGHEHGILTGPG 330

Query: 378  RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
            RGS AGS+ +Y L ITDIDP+ ++LLFERFLNP+R+++PD DIDF   RRDE+IRYV++K
Sbjct: 331  RGSAAGSLVSYVLEITDIDPIEYNLLFERFLNPERVTLPDIDIDFPDIRRDEMIRYVKDK 390

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            YG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +  +A  +   
Sbjct: 391  YGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSRVGITLK-EAYEESGS 449

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
             RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V + ++  +D+ VTQ
Sbjct: 450  LREFVQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI-QEGHNDVYVTQ 508

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKG 616
            +  + +E+ GL+K DFLGL+ LTLL+  L F+  + G ++D+  +P  D +T+ LL    
Sbjct: 509  YPAEVLEELGLLKMDFLGLRNLTLLENILTFIVNKTGKQIDIRNLPLQDEKTFQLLGRGD 568

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            T G+FQLES GMR  L  ++P+  EDI+A+ +LYRPGP++ I  +   K+GK +I  +H 
Sbjct: 569  TTGVFQLESGGMRNVLRSLKPNEFEDIVAVNALYRPGPMEQIPTFIESKHGKCQIHYLHS 628

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
             + P+LK T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK +E +D++++ F+ G 
Sbjct: 629  DLKPILKSTYGVIVYQEQIMQIASQLAGFSLGEADLLRRAVSKKNREILDQERKHFVQGC 688

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP+EF+ A ++  +
Sbjct: 689  LRNGYDETSAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYPLEFMTALLSSAI 748

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
             N +KI ++ ++ ++    ++PPS++    +F++  N I YSL +I+ +G  T   ++E 
Sbjct: 749  GNEDKIVQYIRETKRKGFHVLPPSLHRSSYNFQIEGNAIRYSLLSIRNIGMATVNAVIEE 808

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
                PF  L +FC R+ +K +  R LE+ V+AG  D F  SR  L  S+    +YA    
Sbjct: 809  RERNPFQDLFEFCLRMPAKFVTERNLEAFVWAGCFDDFQVSRTTLFNSIKGALEYAS--- 865

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-RFENEQRVLGFYFSGHPLDVYKPIL 975
                       A E G  S   ++     E S + +  NE+  LGFY S +P   Y  ++
Sbjct: 866  ----------LARELGEESVPKSVYVQGEELSFIEQLNNEKEALGFYLSSYPTAQYAKLV 915

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +++ I    +++   R N  R    V   +  +T+K  ++ +VTF +   E EA  FP
Sbjct: 916  KELEIPSLAQAMRQKR-NVQRAIVYVTGVKVIRTKKLQKMAFVTFCDQNDEMEAVVFP 972


>gi|315652846|ref|ZP_07905820.1| DNA-directed DNA polymerase III alpha subunit [Eubacterium saburreum
            DSM 3986]
 gi|315485048|gb|EFU75456.1| DNA-directed DNA polymerase III alpha subunit [Eubacterium saburreum
            DSM 3986]
          Length = 1152

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1051 (37%), Positives = 603/1051 (57%), Gaps = 47/1051 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +  I+ +       ++AITD   ++  ++F ++A A GI+P
Sbjct: 2    SFTHLHVHTGYSLLDGSCKIKEIISRAKKLNMASLAITDHGVMYGVIDFYKEAKANGIKP 61

Query: 70   IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I+GC++ +       K   QG   +     ++LL    +GY+ L ++VS+ +  +     
Sbjct: 62   ILGCEVYVSPSSRFEKQAKQGDRYY----HLILLAKNNKGYENLTKIVSKGFT-EGFYYK 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             RI    L+E   EG+I L+   +G I +       + A+K    +K LFG D  Y+ LQ
Sbjct: 117  PRIDFELLKEY-HEGIIALSACLAGEIPKLISRGREEEAKKVAKKYKDLFGEDNFYLELQ 175

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H     ++    +V++    ++PLVATN+  +++ ED +AHD+L+ +     VS  DR 
Sbjct: 176  NHGIPEQKFVNQSLVKIGKELDIPLVATNDIHYINAEDAKAHDILLCIQTGKTVSDPDRM 235

Query: 247  RVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R     + LK+  EM ++F   PEA+ENT +IA  C+  ++     LP +     +++  
Sbjct: 236  RYEGGQFFLKSEDEMKALFPYAPEAVENTGKIADMCNVEIKFGETKLPEY--PVPNNLSA 293

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             E   L +   +G E         K Y + ++  +R+ +EL VI  M +  YFLIV D+I
Sbjct: 294  REY--LESLCKSGFERNYP-----KDYENREEIEKRMYYELGVIETMGYIDYFLIVWDYI 346

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+   I VGPGRGS AGSV +Y L ITDIDP++++L+FERFLNP+R+SMPD D+DF  
Sbjct: 347  NYARSVGISVGPGRGSAAGSVVSYCLGITDIDPIKYNLIFERFLNPERVSMPDIDVDFAD 406

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YV  KYG ERV QIITFG+LQA+  +RDVGRA+++PY++ D + K+IP D  
Sbjct: 407  ERRGEVIDYVVGKYGSERVCQIITFGTLQARGVIRDVGRAMEIPYARCDSIAKMIPRDKD 466

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +SL A+  +   +E   +D  V  L++ S KLEGL RHAS HAAG+VI  + + + VP
Sbjct: 467  ITLSL-ALERNKELKELYDSDEVVHELIDYSLKLEGLPRHASIHAAGVVISKKAVDEYVP 525

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +   +  D   TQF M  +E+ GL+K DFLGL+TLT+LQ +L+ + +  GV +DL  I +
Sbjct: 526  LALGI-DDAVTTQFTMTTLEELGLLKMDFLGLRTLTVLQNALEMIKKNHGVDIDLKKIDY 584

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D + Y  ++T  T  +FQLES GM+  ++ ++P+ +EDIIA +SLYRPGP+D I  Y +
Sbjct: 585  SDKKVYEFISTGKTDAVFQLESGGMQNFMKRLKPENLEDIIAGISLYRPGPMDFIPKYID 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             KN K K+    P +  +L+ T G I+YQEQVMQI + L+GY++  +D +RRAM KK   
Sbjct: 645  GKNSKGKVSYDTPKLISILEPTYGCIVYQEQVMQIVRDLAGYTMGGSDEVRRAMSKKKAH 704

Query: 724  EMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
             M+ +++ F        I G  KNGI + +A  IF+ +  FA Y FNKSHAA YAVISYQ
Sbjct: 705  VMEMERKNFIYGNEEKKIKGCIKNGIDEKVANRIFDEMIDFASYAFNKSHAACYAVISYQ 764

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K +YP EF+AAS+T   DN  K+ ++        I+I+PP VN     F V  + I
Sbjct: 765  TAYLKYYYPKEFMAASLTSVSDNPAKLSEYMGSLTDMGIKILPPDVNLGEGAFSVDKDGI 824

Query: 836  YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + LA IKGVG   A  ++ E + +  + +LE+F +R+  K LN+R +ES + AGALD  
Sbjct: 825  RFGLATIKGVGKAVADVLVRERTLNGRYLTLENFINRLPQKDLNKRSIESFIKAGALDGL 884

Query: 895  GYSRMQLLQS----LDNIQKYAQWVEKNRTNKHENIFAHEKGTF-SDKITLEKFSVENSS 949
              +R + + +    +D   K ++ V   + +  + +   ++ +F S+ I ++++  E   
Sbjct: 885  AGNRHEKILNAELLIDKKSKESKAVIPGQISFFDVVDKDDRDSFVSEMIHIDEYKKEE-- 942

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKM----GIKGYEESVATI---RGNNIRLAAMVV 1002
               + E  VLG Y SGHPL+ Y  +L K      I  Y +    I    G  + +  ++ 
Sbjct: 943  -LLKYEMEVLGMYVSGHPLEEYITMLEKYTDVRSIDFYPDEDGNILIESGRKVVVGGLLS 1001

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               ++ T+KG  +   T  +     E   FP
Sbjct: 1002 EVNKRFTKKGDMMAICTLEDMYGRIELVVFP 1032


>gi|315300688|gb|EFU59915.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           16-3]
          Length = 770

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/787 (44%), Positives = 500/787 (63%), Gaps = 34/787 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
           +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59  DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFLAAS 791
            EF+AA 
Sbjct: 764 AEFMAAG 770


>gi|301167724|emb|CBW27308.1| DNA polymerase III alpha subunit [Bacteriovorax marinus SJ]
          Length = 1215

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/1079 (36%), Positives = 619/1079 (57%), Gaps = 64/1079 (5%)

Query: 5    LEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            LE  P SFVHL +H+ YSLL+GA+ L +++        PAIA TD  N+F A++F ++  
Sbjct: 17   LETHPNSFVHLHLHTQYSLLDGAIRLKDLIPAAKEMGVPAIAQTDHGNMFGAIDFYKRCK 76

Query: 64   AAGIQPIIGCQLDI---------DMQDNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLI 113
            +AGI+PI+G ++             + + +++NQ +      +  ++LL     GYQ L 
Sbjct: 77   SAGIKPILGSEIYFTPGSRFDRKSARRSARVSNQDEEESNHHIHHLILLAKNNIGYQNLC 136

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +L+SR YL +      R  +  L+E  +EGLI  T    G +   FF    + A + +  
Sbjct: 137  KLLSRAYL-EGFYYKPRADIELLKEY-SEGLICTTACLKGEVGYNFFTGQDEKAVRAIEK 194

Query: 174  FKKLFG-DRLYVNLQRH---RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             +++FG +  Y+ +Q +      D  R  +V++ A   ++ +VATN++ +++ ED  A +
Sbjct: 195  LQEVFGYEDFYLEIQENGIPEQADVNR--KVLEYAKEKKVKVVATNDAHYMTPEDATAQE 252

Query: 230  VLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ-- 286
            VL+ +      + ++R ++T  + Y K+  +M   F   PEA + T+EIA +C+  L   
Sbjct: 253  VLLCIQTGKSFADENRMKMTSQEFYYKSPEKMREQFHYAPEACDATLEIADKCNVELNWT 312

Query: 287  -------VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK-----GYHA 334
                    H P  P        D  + E++  R     GLE R       K      + A
Sbjct: 313  DEQGNQIYHLPDYPI-------DTGETEDDYFRRMCKEGLEERFRGPHFTKLVSEDNWKA 365

Query: 335  Q---DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
            +    Y +RL +E+++I  M F GYFLIVADFIQW+K N IPVGPGRGSGAGS+ AYA+T
Sbjct: 366  ELEPKYWERLKYEVDMIIEMGFPGYFLIVADFIQWSKNNGIPVGPGRGSGAGSLAAYAMT 425

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT+IDPL ++LLFERF+NP+R+SMPDFD+DFCQ  R  VI YV  KYG E+V QIITFG 
Sbjct: 426  ITNIDPLPYNLLFERFINPERISMPDFDVDFCQAGRQRVIEYVTEKYGEEKVGQIITFGK 485

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDR 510
            LQAKA ++DV R   + +++ + L KLIP++    ++L+ AI  + + +E    D  + +
Sbjct: 486  LQAKAVVKDVSRVFDLSFAEANMLSKLIPDELG--INLEKAIEMEPKIQELIDTDSKIRQ 543

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            +  IS++LEGLYRHA  HAAG++I  +PL +  P+++  + +  V QF+  + E+ GL+K
Sbjct: 544  IFTISRRLEGLYRHAGIHAAGVIITSKPLVEYCPLFKGAKGE-KVVQFDKDFSEEIGLVK 602

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
            FDFLGLKTLT++  +  F+ +  VK  D+  I ++D + Y  +    T+G+FQLESSGM 
Sbjct: 603  FDFLGLKTLTVIDYASKFVQRDHVKDFDIEEIDYEDKKVYDFIGDGNTIGVFQLESSGMI 662

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQG 687
               + + PD I+DI A+ +LYRPGP+ + +   +   K+G++K       + P+LK+T G
Sbjct: 663  DLCKRIMPDSIDDITAINALYRPGPMGSGMHDQFVEIKHGRQKEHYAFEELRPLLKDTYG 722

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQVM IA++L+GY+L +AD+LR+AMGKK    +++ +E F+ GA++ G     A 
Sbjct: 723  IIVYQEQVMNIARVLAGYTLGQADILRKAMGKKKIALIEEHREIFLKGAAERGFDVEKAG 782

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             +++L+A FA+YGFNKSHA AY+ IS+QTA++K +YP  F A  ++ E+ N +K+  +  
Sbjct: 783  ELYQLMASFAEYGFNKSHAVAYSYISFQTAFLKYYYPACFFAGLLSTELSNTDKVTVYIN 842

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG-TTTARHIMEASADKPFDSLE 866
            DA+   ++++PP VN     F V    I + + AIK VG       + E   + PF    
Sbjct: 843  DAKNHGVEVLPPDVNESLWLFNVIGQNIRFGMGAIKNVGENAVEELVREREENGPFKGFI 902

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALD-C-FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            DFC+RV  K +N RV+ESL+  GA D C    +R  +L++ + I  YA+ ++  +     
Sbjct: 903  DFCTRVSLKIVNNRVIESLIKVGAFDECETKLNRKTMLENAELIVTYAKKLQHEKELGQV 962

Query: 925  NIF-----AHEKGTFSDKITLEKFSVEN---SSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            ++F     + +    +D + +    + N      +   E +++G Y SGHPLD Y  I+ 
Sbjct: 963  SLFDMGGSSSDDDGSNDPMKMLDIQITNDFDDREKLAYEAQLMGIYVSGHPLDRYSDIMG 1022

Query: 977  KMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K+       +     G+   + LA ++  K+   T+KG R+ +    + + + E   FP
Sbjct: 1023 KLASMDIAAARDLTGGDKREMMLAGLISEKRDIMTKKGDRMCFAQLEDLSGKIECIVFP 1081


>gi|302380218|ref|ZP_07268690.1| DNA polymerase III, alpha subunit [Finegoldia magna ACS-171-V-Col3]
 gi|302312001|gb|EFK94010.1| DNA polymerase III, alpha subunit [Finegoldia magna ACS-171-V-Col3]
          Length = 1161

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/1059 (35%), Positives = 599/1059 (56%), Gaps = 62/1059 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G   +  +LDK+   +  AIAITD  ++F  ++F ++     I+P
Sbjct: 4    TFTHLHVHTEYSLLDGFSPIEKLLDKVEELKMKAIAITDHGSMFGTVKFYKECKKRNIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++    +D+ K+ N     +     +VLL    +GY  L+++VS  Y+ +      
Sbjct: 64   IIGCEIYTTNKDH-KIKNPENKFYN---HLVLLAKNQQGYSNLMKIVSLGYV-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+  + L++  +EG+I L+    G +  +        A+      K ++G+  Y+ LQ H
Sbjct: 119  RVDKNTLRKY-SEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNH 177

Query: 190  RGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                  RE  VV     ++A   ++ LV TN+  ++ +EDY+ H++L+ +     + + +
Sbjct: 178  SS----REDMVVMENIPKIAKELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEDN 233

Query: 245  RPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            +    P + +L++  +M  +F D PEA+ENT +IA  C+  L+     LP F   E    
Sbjct: 234  KMSYIPGEFFLRSEEQMKDLFKDYPEAIENTKKIAEMCNVELEFGHLHLPYFAIPEG--- 290

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                 + L+     GLE R A          Q+ ++R ++EL+VI +M +  YFLIV DF
Sbjct: 291  -FTNSSYLKKLVFDGLEKRFANDE-----RLQEAKERCEYELSVIEKMGYVDYFLIVWDF 344

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++AK  +IPVGPGRGS AGS+ +Y L ITDI+PL + L+FERFLNP+R+SMPD DIDFC
Sbjct: 345  IRFAKSQDIPVGPGRGSAAGSIISYCLEITDINPLDYDLIFERFLNPERVSMPDIDIDFC 404

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EVI YV NKYG ++VAQI+TFG++ A+ A+RDVGR L M +  VD   K +PN  
Sbjct: 405  YERREEVIDYVVNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLL 464

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +++     FR+A   +  V +L+++++++EG+ RH STHAAG+VI   P+ + V
Sbjct: 465  NINID-KSLEISPEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYV 523

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+   +  D  +TQFNM  +E+ GL+K DFLGL+TLT++   + ++ + + + V+   + 
Sbjct: 524  PLA--INKDAVITQFNMTELEELGLLKMDFLGLRTLTVISDCIKYIKKNKNIDVNFEDMN 581

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D +   + T   TLGIFQ ES GMR  L+ ++P   +D+IA  +L+RPGP++ I  Y 
Sbjct: 582  ENDPKVLSMFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPMNEIPTYI 641

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            + K+ +E +  + PL++ +LK T G I+YQEQVMQI Q ++G+SL EAD LRRAM KK  
Sbjct: 642  HNKHNEEDVEYLSPLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKKM 701

Query: 723  EEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + M+  ++ F            I GA + G+ + +A  I++L+  FA Y FNKSH+AAY+
Sbjct: 702  KVMEDGRKEFIFGKEDENGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAYS 761

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +++ +TAW+K +YPVEFLAA ++  M N  +I  + ++AR+ +I+I PP +N     F V
Sbjct: 762  LVAMRTAWLKYYYPVEFLAALISSVMGNTSQISLYIEEARRLDIEISPPDINYSLDKFDV 821

Query: 831  GDNRIYYSLAAIKGVGTT-TARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLV 886
             DN I Y L AIK VGT    + I+  + +  F S  DF  R+   D   +N+R +ESL+
Sbjct: 822  KDNSIIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESLI 881

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEK 942
             AGA    G +R  L+    +I    Q   KN      N+F    ++E+    D    E+
Sbjct: 882  KAGAFSSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNEENDRDDFTRREE 941

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK--------MGIKGYEESVATIRGNN 994
            F   + S     E+ VLG Y S HPL  Y  I+ +        +    Y E      G  
Sbjct: 942  F---DKSELLRMEKEVLGIYLSDHPLRAYSSIIDQYSNFSTGDLEDDAYNEK--NFDGKR 996

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +++  ++ S  +K T+    + +V F +     E   FP
Sbjct: 997  VKVVGIIESINKKFTKNQKIMEFVKFEDLYGTMELIVFP 1035


>gi|323485857|ref|ZP_08091192.1| hypothetical protein HMPREF9474_02943 [Clostridium symbiosum
            WAL-14163]
 gi|323400845|gb|EGA93208.1| hypothetical protein HMPREF9474_02943 [Clostridium symbiosum
            WAL-14163]
          Length = 1176

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/1058 (37%), Positives = 593/1058 (56%), Gaps = 54/1058 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E+  +F HL VH+ YSLL+ +  +  +  +       ++AITD   ++  ++F + A  A
Sbjct: 14   EQGVAFTHLHVHTEYSLLDASSKIKELTARAKELGMDSLAITDHGVMYGVIDFYRAAKEA 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            GI+PIIGC++ +         N  G+  +     ++LL     GYQ L+++VS+ ++ + 
Sbjct: 74   GIKPIIGCEIYVAPGSRFDRENVNGEDRYY---HLILLAENNVGYQNLMKIVSKGFV-EG 129

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183
                 R+    L+E  +EG+I L+    G + R       + A K  L ++++FG+   +
Sbjct: 130  FYYKPRVDFEVLREY-SEGIISLSACLGGEVQRYLTRGMYEEACKSALRYQEIFGEGNFF 188

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQ H G    +      L  + EL  PL ATN+  ++ +ED E+HD+L+ +     V+
Sbjct: 189  LELQDH-GIPAQKTVNQGLLRMSQELGIPLTATNDCHYIYKEDVESHDILLCIQTGKKVA 247

Query: 242  QKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             ++R R      YLK+  EM  IF    +AL+NT +IA RC+  ++     LP+F   E 
Sbjct: 248  DENRMRYEGGQFYLKSEEEMREIFPYAADALDNTHKIAERCNVDIEFGVTKLPQFDVPE- 306

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFL 358
                      LR         +L      K Y   D   ++RL++EL VI  M +  YFL
Sbjct: 307  ---GYTSWEYLR---------KLCFDGFNKHYPDDDGTLKERLEYELGVIQSMGYVDYFL 354

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI +AK ++I VGPGRGS AGS+ AY+L ITDIDP+R+ LLFERFLNP+R+SMPD 
Sbjct: 355  IVWDFIHFAKSHDIMVGPGRGSAAGSIVAYSLGITDIDPIRYQLLFERFLNPERVSMPDI 414

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC +RR EVI YV +KYG +RV QI+TFG+L AK  +RDVGR L MPY++ D + K+
Sbjct: 415  DIDFCFERRQEVIDYVVSKYGKDRVVQIVTFGTLAAKGVVRDVGRVLDMPYAKCDSIAKM 474

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP D    +  +A+      R A   D  V  L+++S++LEGL RH S HAAG+VI    
Sbjct: 475  IPGDLGMTLD-KALKASPDLRSAYQEDDEVKYLIDMSRRLEGLPRHTSMHAAGVVISKAS 533

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--V 596
            + + VP+ R     +  TQF M  +E+ GL+K DFLGL+TLT++Q ++  LA++  K  +
Sbjct: 534  VDEYVPLSRAADGSI-TTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVR-LAEKTCKKTI 591

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL  I ++D      + T    G+FQLESSGM+  ++ ++P+ +EDIIA +SLYRPGP+D
Sbjct: 592  DLYNIDYNDKNVLDAIGTGKNDGVFQLESSGMKSFMKELKPENLEDIIAGISLYRPGPMD 651

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I  Y   KN K+ I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D++RRA
Sbjct: 652  FIPRYLKGKNDKKSITYECPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRA 711

Query: 717  MGKKIKEEMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            M KK    M+K+++ F+ G  +        NGI +  A +I++ +  FA Y FNKSHAAA
Sbjct: 712  MSKKKGSVMEKERQNFVYGNGEEGVKGCIANGIDEKTANHIYDEMIDFAKYAFNKSHAAA 771

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YAV+SYQTA++K +YPVEF+AA MT   DNV K+ ++    RQ  ++I+PP +N     F
Sbjct: 772  YAVVSYQTAYLKYYYPVEFMAALMTSVKDNVTKVSEYIMACRQMGMKIVPPDINEGEGGF 831

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V    I Y L+AIK +G +    I++   ++  F +LEDF  R+ SK++N+R LES + 
Sbjct: 832  SVSGGSIRYGLSAIKSIGQSVVEEIVKERRERGEFKTLEDFVDRMSSKEVNKRTLESFIK 891

Query: 888  AGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            +GA+D    +R Q      Q LD   K  +   + +    + +   EK  F  ++T    
Sbjct: 892  SGAMDSLPGTRKQKFLVSAQLLDQKNKEKKNSMEGQMTMFDFVAEEEKENF--QVTFPNV 949

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG-------IKGYEESVATIR-GNNI 995
                       E+ +LG Y SGHP++ Y  +  K         I   E   A +R G  +
Sbjct: 950  GEYTKDELLYFEKEMLGVYISGHPMEAYIGLWEKNVTARTSDFIVDEETGEAQVRDGAIV 1009

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +  M+ +K  K TR    + +VT  +     E   FP
Sbjct: 1010 TIGGMLTAKTVKTTRTNKMMAFVTIEDLYGSVEVLVFP 1047


>gi|323693196|ref|ZP_08107414.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
 gi|323502679|gb|EGB18523.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
          Length = 1176

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/1058 (37%), Positives = 593/1058 (56%), Gaps = 54/1058 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E+  +F HL VH+ YSLL+ +  +  +  +       ++AITD   ++  ++F + A  A
Sbjct: 14   EQGVAFTHLHVHTEYSLLDASSKIKELTARAKELGMDSLAITDHGVMYGVIDFYRAAKEA 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            GI+PIIGC++ +         N  G+  +     ++LL     GYQ L+++VS+ ++ + 
Sbjct: 74   GIKPIIGCEIYVAPGSRFDRENVNGEDRYY---HLILLAENNVGYQNLMKIVSKGFV-EG 129

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183
                 R+    L+E  +EG+I L+    G + R       + A K  L ++++FG+   +
Sbjct: 130  FYYKPRVDFEVLREY-SEGIISLSACLGGEVQRYLTRGMYEEACKSALRYQEIFGEGNFF 188

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQ H G    +      L  + EL  PL ATN+  ++ +ED E+HD+L+ +     V+
Sbjct: 189  LELQDH-GIPAQKTVNQGLLRMSQELGIPLTATNDCHYIYKEDVESHDILLCIQTGKKVA 247

Query: 242  QKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             ++R R      YLK+  EM  IF    +AL+NT +IA RC+  ++     LP+F   E 
Sbjct: 248  DENRMRYEGGQFYLKSEEEMREIFPYAADALDNTHKIAERCNVDIEFGVTKLPQFDVPE- 306

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFL 358
                      LR         +L      K Y   D   ++RL++EL VI  M +  YFL
Sbjct: 307  ---GYTSWEYLR---------KLCFDGFNKHYPDDDGTLKERLEYELGVIQSMGYVDYFL 354

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI +AK ++I VGPGRGS AGS+ AY+L ITDIDP+R+ LLFERFLNP+R+SMPD 
Sbjct: 355  IVWDFIHFAKSHDIMVGPGRGSAAGSIVAYSLGITDIDPIRYQLLFERFLNPERVSMPDI 414

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC +RR EVI YV +KYG +RV QI+TFG+L AK  +RDVGR L MPY++ D + K+
Sbjct: 415  DIDFCFERRQEVIDYVVSKYGKDRVVQIVTFGTLAAKGVVRDVGRVLDMPYAKCDSIAKM 474

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP D    +  +A+      R A   D  V  L+++S++LEGL RH S HAAG+VI    
Sbjct: 475  IPGDLGMTLD-KALKASPDLRNAYQEDDEVKYLIDMSRRLEGLPRHTSMHAAGVVISKAS 533

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--V 596
            + + VP+ R     +  TQF M  +E+ GL+K DFLGL+TLT++Q ++  LA++  K  +
Sbjct: 534  VDEYVPLSRAADGSI-TTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVR-LAEKTCKKTI 591

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL  I ++D      + T    G+FQLESSGM+  ++ ++P+ +EDIIA +SLYRPGP+D
Sbjct: 592  DLYNIDYNDKNVLDAIGTGKNDGVFQLESSGMKSFMKELKPENLEDIIAGISLYRPGPMD 651

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I  Y   KN K+ I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D++RRA
Sbjct: 652  FIPRYLKGKNDKKSITYECPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRA 711

Query: 717  MGKKIKEEMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            M KK    M+K+++ F+ G  +        NGI +  A +I++ +  FA Y FNKSHAAA
Sbjct: 712  MSKKKGSVMEKERQNFVYGNGEEGVKGCIANGIDEKTANHIYDEMIDFAKYAFNKSHAAA 771

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YAV+SYQTA++K +YPVEF+AA MT   DNV K+ ++    RQ  ++I+PP +N     F
Sbjct: 772  YAVVSYQTAYLKYYYPVEFMAALMTSVKDNVTKVSEYIMACRQMGMKIVPPDINEGEGGF 831

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V    I Y L+AIK +G +    I++   ++  F +LEDF  R+ SK++N+R LES + 
Sbjct: 832  SVSGGSIRYGLSAIKSIGQSVVEEIVKERRERGEFKTLEDFVDRMSSKEVNKRTLESFIK 891

Query: 888  AGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            +GA+D    +R Q      Q LD   K  +   + +    + +   EK  F  ++T    
Sbjct: 892  SGAMDSLPGTRKQKFLVSAQLLDQKNKEKKNSMEGQMTMFDFVAEEEKENF--QVTFPNV 949

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG-------IKGYEESVATIR-GNNI 995
                       E+ +LG Y SGHP++ Y  +  K         I   E   A +R G  +
Sbjct: 950  GEYTKDELLYFEKEMLGVYISGHPMEAYIGLWEKNVTARTSDFIVDEETGEAQVRDGAIV 1009

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +  M+ +K  K TR    + +VT  +     E   FP
Sbjct: 1010 TIGGMLTAKTVKTTRTNKMMAFVTIEDLYGSVEVLVFP 1047


>gi|307638113|gb|ADN80563.1| DNA polymerase III alpha subunit [Helicobacter pylori 908]
          Length = 1211

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/1040 (37%), Positives = 599/1040 (57%), Gaps = 75/1040 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ LI  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLI-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + P  P F       ++E  D + ++ +   +KA  GL+ RL    + K  H Q Y++RL
Sbjct: 294  NPPTPPSFKFTKAYAKEEGLDFE-DDASYFAHKAREGLKERLI--LVPKEKHDQ-YKERL 349

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ 
Sbjct: 350  EKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV
Sbjct: 410  LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512
             R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+        
Sbjct: 470  ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNEIAKQ 527

Query: 513  --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
              E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LI
Sbjct: 528  VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587

Query: 570  KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            KFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SGM
Sbjct: 588  KFDFLGLKTLTVIDDALKIIKTQHKIGVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646

Query: 629  RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
             Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T
Sbjct: 647  FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPT 706

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     
Sbjct: 707  YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++
Sbjct: 767  AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856
              + R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E 
Sbjct: 827  IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEE 886

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
                 + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +   
Sbjct: 887  RTKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944

Query: 917  KNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDV 970
            K++ N+      ++F   +G   +++ L+   +   ++    E E   LG + SG+PLD 
Sbjct: 945  KDKANEMMQGGNSLFGAMEGGIKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004

Query: 971  YKPILRKMGIKGYEESVATI 990
            +K       IKG++  V +I
Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019


>gi|301028677|ref|ZP_07191898.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           196-1]
 gi|299878309|gb|EFI86520.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           196-1]
          Length = 771

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/787 (44%), Positives = 500/787 (63%), Gaps = 34/787 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
           +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59  DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKKGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFLAAS 791
            EF+AA 
Sbjct: 764 AEFMAAG 770


>gi|296125094|ref|YP_003632346.1| DNA polymerase III, alpha subunit [Brachyspira murdochii DSM 12563]
 gi|296016910|gb|ADG70147.1| DNA polymerase III, alpha subunit [Brachyspira murdochii DSM 12563]
          Length = 1240

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/987 (37%), Positives = 571/987 (57%), Gaps = 40/987 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNI--------------LDKIAADQQPAIAITDTNNLFSA 55
           SFVHL VH+ YS+L+GA  + ++              +D+    + PAIAITD  N+F  
Sbjct: 2   SFVHLHVHTQYSILDGASRIKSLYSKKDKKKRLIPGLIDRAVELEMPAIAITDHGNMFGV 61

Query: 56  LEFSQKACAAGIQPIIGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
           +EF  +A   GI P+IGC+L +  +     K+ N  +    +   ++LL    EGY  L 
Sbjct: 62  MEFFSEAKDKGIIPVIGCELYVAPKTRFDKKIENSEEK---SAMHLILLAKDKEGYDNLC 118

Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
           +LV+  Y   +G          L E   +GLI L+    G I  A      + A K    
Sbjct: 119 KLVTFGYT--EGFYYRPRVDHELIEKYNKGLICLSACMGGEIPIAIRKKDYKQASKLAEY 176

Query: 174 FKKLFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
           +K +FG+  Y+ LQ H    ++   S + +LA  H + +V TN+  ++ +ED +AH++L+
Sbjct: 177 YKSIFGNDFYIELQDHNIPEEKSLNSALYKLANHHSIEMVVTNDVHYVLKEDAKAHEILL 236

Query: 233 AVAHSTVVSQKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFI-LQVHAP 290
           A+     +    R +   + + LK++ EM+  F+ LP+A ENTV+IA +C  + +     
Sbjct: 237 AIQTKATLDSPRRYKFPSNEFHLKSKEEMMKSFAKLPKAFENTVKIAEQCRDLNIMTKTY 296

Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +P +   E  +  + E   LRN  + GL               ++  +RL+ EL VI++
Sbjct: 297 YMPNY---ELPN-GETETTALRNMCMEGLNKHYNNNI------PKEAMERLEMELGVISK 346

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFL+V DFI +A+ +++ VGPGRGS AGS+ A+A  IT ++PL ++LLFERFLNP
Sbjct: 347 MGFEGYFLVVQDFINYARNHDVAVGPGRGSAAGSIVAFATGITKVNPLDYNLLFERFLNP 406

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
           +R SMPD D+DF  D+R+ +I YV+ KYG + VAQI TFG+L  ++ +RDV R + +  +
Sbjct: 407 ERKSMPDIDVDFQDDKREVIIDYVKEKYGKDNVAQIATFGALGGRSVIRDVCRVMGIDLA 466

Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
             DRL K IPND +  V +    D + FR+   +   +  + EIS +L+GL R+   HAA
Sbjct: 467 TADRLAKGIPNDVSRVVDIYDHPDCAEFRKEVESSRELKNMYEISTRLDGLVRNVGLHAA 526

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           G++I   P+  L P+Y+D ++     Q+ M ++E AGLIK DFLG+K L L++ ++  + 
Sbjct: 527 GVIISSHPIMDLAPVYQDSKTGTRACQYEMTYVESAGLIKMDFLGIKNLRLIKDAVKDIK 586

Query: 591 QR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
           +R G ++D+  IP DD   Y +     T G+FQ ES GMRQ L  +QP   +D+++ V+L
Sbjct: 587 ERYGTEIDIDKIPLDDEAVYDIFRKADTGGVFQFESPGMRQMLINIQPTGFDDLVSSVAL 646

Query: 650 YRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
           YRPGP+++ +   Y +RKN +++IV  HP ++P+LKE+QGV+IYQEQ+M I++++ G++ 
Sbjct: 647 YRPGPLNSGMDKDYADRKNKRKEIVYKHPDLEPILKESQGVLIYQEQIMAISRVIGGFTA 706

Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
           +EAD LR+AMGKKI E+M+  +E+FI+G  + G  K +   +F+ +  FA+YGFNKSH+ 
Sbjct: 707 AEADDLRKAMGKKIVEKMNSMEEKFINGGLERGYDKELLTYLFDTMKGFAEYGFNKSHSV 766

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            YA+I+YQ A++K HYP+E+  A +   + + +KI  +  + +Q NI I+  SV      
Sbjct: 767 CYALIAYQEAYIKAHYPMEYYVALLNTVIADTDKISLYLNEVKQKNIDIVTASVFESNAL 826

Query: 828 FKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           F   + +I Y+L A+KGVG   A  I E    +  F +LEDF  RVD   +NR+V E+L+
Sbjct: 827 FSQKNGKIVYALHAVKGVGLHAALAIEEEREKNGQFKNLEDFVKRVDVHLVNRKVYETLI 886

Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFS 944
             GA   FG++   LL SLD I  +A   +K   +    +F    E  + S  + +EK  
Sbjct: 887 KCGAFSEFGHTESALLASLDAILAHASNYQKETLSGQTMLFDSMSEDDSGSASLVIEKQV 946

Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVY 971
              S++  ENE+ VLGF    HP   Y
Sbjct: 947 EYASNILMENEKEVLGFSLRYHPFARY 973


>gi|331086727|ref|ZP_08335804.1| hypothetical protein HMPREF0987_02107 [Lachnospiraceae bacterium
            9_1_43BFAA]
 gi|330409893|gb|EGG89328.1| hypothetical protein HMPREF0987_02107 [Lachnospiraceae bacterium
            9_1_43BFAA]
          Length = 1158

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/1051 (36%), Positives = 603/1051 (57%), Gaps = 47/1051 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   +F  ++F + A AAGI P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMFGVIDFYRAAKAAGINP 61

Query: 70   IIGCQLDIDMQDNLKM-TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I+GC++ +          N G+  +     +VLL    +GYQ L+++VS+ ++ +     
Sbjct: 62   ILGCEVYVAPGSRFDHEINGGEDRYY---HLVLLAENNQGYQNLMKIVSKGFV-EGYYYK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187
             RI +  L+E   EG+I L+   +G + +       + A++  L ++ +FG    ++ LQ
Sbjct: 118  PRIDIELLEEY-HEGIIALSACLAGEVQKNLLRGMFEEAKQAALRYESIFGKGNFFLELQ 176

Query: 188  RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++   +Q +++LA    + LVATN+  +   ED + HD+L+ +     ++ ++R 
Sbjct: 177  DHGLTEQADVNQRLIRLAAETGIELVATNDVHYTYAEDEKPHDILLCIQTGKKLTDENRM 236

Query: 247  RVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R     +Y+K+  EM+ +F    +ALENT +IA RC   ++     LP++ +        
Sbjct: 237  RYAGGQYYVKSEQEMIELFPYARQALENTQKIADRCHVEIEFGVTKLPKY-DVPGGMTSW 295

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            E  N+L      GLE R            ++ ++RL +EL+ I  M +  YFLIV DFI+
Sbjct: 296  EYLNQL---CFEGLERRYPN-------PGEELKERLFYELSTIKNMGYVDYFLIVWDFIK 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+ N+I VGPGRGS AGS+ +Y L IT+IDP+R+ LLFERFLNP+R+SMPD DIDFC +
Sbjct: 346  YARDNDISVGPGRGSAAGSIVSYCLGITNIDPIRYQLLFERFLNPERVSMPDIDIDFCFE 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV  KYG +RV QI+TFG++ A+  +RDVGR + +PY+ VD + K+IP +   
Sbjct: 406  RRQEVIDYVVRKYGKDRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDTIAKMIPTELNI 465

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+  +  FR+    D  V  L+++S++LEGL RH S HAAG+VI  + + + VP+
Sbjct: 466  TID-KALKMNPEFRKMYETDEQVKYLIDMSKRLEGLPRHTSMHAAGVVISQKSVDEYVPL 524

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
             R     +  TQF M  +E+ GL+K DFLGL+TLT++Q +++ + Q  GVK+D+  I ++
Sbjct: 525  SRASDGSI-TTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVNLVEQATGVKLDMGEIDYN 583

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D      + T  T G+FQLES+GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   
Sbjct: 584  DKLVLDSIGTGKTDGVFQLESAGMKNFMKELKPQSLEDIIAGISLYRPGPMDFIPQYIKG 643

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            KN K  I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK  + 
Sbjct: 644  KNDKGSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKADV 703

Query: 725  MDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            M+++++ F        + G   NGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQT
Sbjct: 704  MERERQSFVYGNIDEGVPGCLNNGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQT 763

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K +YP+EF+AA MT  ++N  K+ ++   ARQ  I+I+PP +N     F V +  I 
Sbjct: 764  AYLKYYYPIEFMAALMTSVIENPTKVSEYIYAARQMGIKILPPDINRGVSGFSVDEGNIR 823

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKK-LNRRVLESLVFAGALDCF 894
            Y LAAIK +G      I+ E   +  +  L+DF  R+  K+ LN+R +E+ + AGALD  
Sbjct: 824  YGLAAIKSIGKPVIEAIVSEREENGLYRGLKDFIERISLKEMLNKRSIENFIKAGALDNL 883

Query: 895  GYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            G +R Q +    Q +DN+ +  ++    + +  + +   +K  F  +I L          
Sbjct: 884  GGTRKQFMMIYIQIVDNVNQEKKFSMSGQMSLFDFVDEDQKKEF--EIQLPDVGEYEKET 941

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIRGNNIR--LAAMVV 1002
                E+ VLG Y SGHPLD Y+   +K      +  +  EE+  T   +  +  +  M+V
Sbjct: 942  LLAFEKEVLGVYISGHPLDAYEEQWKKSVSATTLDFQLDEETNRTKVHDGAKEIIGGMIV 1001

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K  K T+    + ++T  +     E   FP
Sbjct: 1002 GKTIKHTKTNQMMAFITVEDLLGTVEVVVFP 1032


>gi|300956067|ref|ZP_07168392.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           175-1]
 gi|300317097|gb|EFJ66881.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           175-1]
          Length = 773

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/787 (44%), Positives = 500/787 (63%), Gaps = 34/787 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
           +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59  DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKKGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFLAAS 791
            EF+AA 
Sbjct: 764 AEFMAAG 770


>gi|261838735|gb|ACX98501.1| DNA polymerase III alpha subunit [Helicobacter pylori 51]
          Length = 1211

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/1038 (37%), Positives = 598/1038 (57%), Gaps = 71/1038 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + P  P F       + E  + + ++ +   +KA  GL+ RL    + K  H Q Y++RL
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFE-DDASYFAHKAREGLKERLV--LVPKEKHDQ-YKERL 349

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ 
Sbjct: 350  EKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV
Sbjct: 410  LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512
             R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+        
Sbjct: 470  ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527

Query: 513  --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
              E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LI
Sbjct: 528  VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587

Query: 570  KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            KFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SGM
Sbjct: 588  KFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646

Query: 629  RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
             Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T
Sbjct: 647  FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPT 706

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     
Sbjct: 707  YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++
Sbjct: 767  AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856
              + R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E 
Sbjct: 827  IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKSELEKKIVFGLGAIKGVGGEPIKNIIEE 886

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
             A   + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +
Sbjct: 887  RAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKD 946

Query: 917  K-NRTNKHEN-IFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYK 972
            K N   + +N +F    G   +++ L+   +   ++    E E   LG + SG+PLD +K
Sbjct: 947  KANEMMQGDNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFK 1006

Query: 973  PILRKMGIKGYEESVATI 990
                   IKG++  V +I
Sbjct: 1007 E-----EIKGFKNLVKSI 1019


>gi|217031799|ref|ZP_03437302.1| hypothetical protein HPB128_199g7 [Helicobacter pylori B128]
 gi|298735572|ref|YP_003728093.1| DNA polymerase III subunit alpha [Helicobacter pylori B8]
 gi|216946451|gb|EEC25053.1| hypothetical protein HPB128_199g7 [Helicobacter pylori B128]
 gi|298354757|emb|CBI65629.1| DNA polymerase III subunit alpha [Helicobacter pylori B8]
          Length = 1211

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/1041 (37%), Positives = 599/1041 (57%), Gaps = 77/1041 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  ++      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRFIEKECDDIQKEE----ENE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            + P  P F  K      KEE    E++     +KA  GL+ RL    + K  H Q Y++R
Sbjct: 294  NPPTPPSF--KFTKSYAKEEGLNFEDDASYFAHKAREGLKERLI--LVPKEKHDQ-YQER 348

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L+ E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++
Sbjct: 349  LEKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKY 408

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RD
Sbjct: 409  DLLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRD 468

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL------- 512
            V R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+       
Sbjct: 469  VARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNDTAR 526

Query: 513  ---EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
               E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   L
Sbjct: 527  QVWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDL 586

Query: 569  IKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            IKFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SG
Sbjct: 587  IKFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SG 645

Query: 628  MRQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE 684
            M Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK 
Sbjct: 646  MFQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYALKELEPILKP 705

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G    
Sbjct: 706  TYGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQ 765

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
             A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + +
Sbjct: 766  KAANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVAR 825

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIME 855
            +  + R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E
Sbjct: 826  YIDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIE 885

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
              A   + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  
Sbjct: 886  ERAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR-- 943

Query: 916  EKNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLD 969
             K++ N+      ++F   +G   +++ L+   +   ++    E E   LG + SG+PLD
Sbjct: 944  AKDKANEMMQGGNSLFGAMEGGIKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLD 1003

Query: 970  VYKPILRKMGIKGYEESVATI 990
             +K       IKG++  V +I
Sbjct: 1004 EFKE-----EIKGFKNLVKSI 1019


>gi|291458628|ref|ZP_06598018.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
            str. F0262]
 gi|291419161|gb|EFE92880.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
            str. F0262]
          Length = 1188

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1063 (36%), Positives = 604/1063 (56%), Gaps = 69/1063 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+SYSLL+GA  +  ++ ++      A+AITD   ++  ++F ++A A GI P
Sbjct: 29   SFTHLHVHTSYSLLDGAGKIPEMIARVKELGMDAVAITDHGVMYGVIDFYKEAKAQGIHP 88

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +        +  GK        +VLL    EGY  L++LV+R +  +      
Sbjct: 89   ILGCEIYLSPASRFDKSF-GKAE-ARYYHLVLLAENEEGYHNLMKLVTRGFT-EGFYYKP 145

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L+     GLI L+   +G + R    +  + A    L ++++FG    ++ LQ 
Sbjct: 146  RVDFELLRRYHG-GLIALSACLAGELARDLSRDQYEEARDAALRYQEIFGKGNFFLELQD 204

Query: 189  HRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H GY   R+    +++L     +P+VATN+  +   ED +AHD+L+ +     ++ +DR 
Sbjct: 205  H-GYPEQRKVNQGLLRLHEDTGIPMVATNDIHYTFREDAKAHDILLCLQTGKKLNDQDRM 263

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R      Y+K+  EM  +F    EA+ NT +IA RC   ++     LP++   E  D   
Sbjct: 264  RYPGGQFYIKSEEEMRELFPYAEEAILNTEKIAERCQVEIEFGHYHLPKY---EVPD-GF 319

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     GL  R        G  A+ YR+RL +EL+VI+ M F+ YFLIV D+I 
Sbjct: 320  TPLSYLRKLCEEGLVRRY-------GEEAEHYRERLSYELSVISSMGFTEYFLIVWDYIH 372

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK + I VGPGRGS AGS+ AY++ ITDIDP+R+ LLFERFLNP+R++MPD D+DF  +
Sbjct: 373  FAKTHGIAVGPGRGSAAGSIVAYSIGITDIDPMRYQLLFERFLNPERVTMPDIDVDFEYE 432

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV  KYG E+V+QIITFG+L AK  +RDVGR + +PY++ D + KLIPN+   
Sbjct: 433  RRQEVIDYVTKKYGKEQVSQIITFGTLAAKGVVRDVGRVMDIPYAKCDMIAKLIPNELNM 492

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+      ++    D    R++++S++LEGL RH+STHAAG+VI    + + VP+
Sbjct: 493  TLE-RALFGSPDLKKLYEEDEETRRIIDMSRRLEGLPRHSSTHAAGVVIAGSAVEEFVPL 551

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
             ++    +  TQF M  +E+ GL+K DFLGL+TLT++Q ++ F  +  G ++DL  + ++
Sbjct: 552  SKNTDGAV-TTQFTMTTVEELGLLKMDFLGLRTLTVIQDAIRFAEKDYGKRIDLERMDYE 610

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D + Y +++     G+FQLES GM   ++ ++P  +ED+IA VSLYRPGP+D I  Y   
Sbjct: 611  DPKVYEMISRGDCAGVFQLESGGMVSFMKRLRPTSLEDVIAGVSLYRPGPMDFIPKYIEG 670

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K   E++   HP I+P+LK T G I+YQEQVMQI + L+GYS+  +D+LRRAM KK    
Sbjct: 671  KKHPERVSYEHPRIEPILKSTYGCIVYQEQVMQIVRELAGYSMGRSDLLRRAMSKKKASV 730

Query: 725  MDKQKERFISGASKN--------GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            M+K++  F+ G  +         GIS+ +A +I++ +  FA Y FNKSHAA YA+I+YQT
Sbjct: 731  MEKERRNFVYGNPEEGIPGCLSAGISEQVANHIYDEMIDFAKYAFNKSHAACYALIAYQT 790

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K +YP EF AA M+  MDN  K  ++ + AR   I I+PP +N     F V D  I 
Sbjct: 791  AYLKCYYPAEFYAALMSSFMDNAGKTAEYLEFARDREIPILPPDINLAESGFSVSDASIR 850

Query: 837  YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y L+A+KG+G + A  I+E       F  LEDF  R+  + +NRR +ESL+++GALD   
Sbjct: 851  YGLSAVKGIGRSAAEQIIEERRRGGKFRDLEDFLLRISDRGVNRRAVESLIYSGALDSLP 910

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF--- 952
             +R + + +L        ++ ++++ +  N  A +  T +D   L + + E  + RF   
Sbjct: 911  GNRREKVTAL-------PFLLESKSKEKRNAMAGQM-TLAD--LLGEDNEEAEAFRFTMP 960

Query: 953  -----------ENEQRVLGFYFSGHPLDVYKPIL-----RKMGI------KGYEESVATI 990
                        NE+  LG Y SGHPLD  + +L      K G        G E  ++  
Sbjct: 961  VLPEFPKAELLRNEKDALGVYLSGHPLDSDRELLDFYVDAKAGAFRTDPESGEEGGLS-- 1018

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G  + +  ++   +QK T+K   + ++T  +     E   FP
Sbjct: 1019 EGQLVTVGGLLTEIRQKVTKKNELMAFLTLEDRQGSIEVTVFP 1061


>gi|152976985|ref|YP_001376502.1| DNA polymerase III DnaE [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025737|gb|ABS23507.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 1109

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/1030 (35%), Positives = 594/1030 (57%), Gaps = 54/1030 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + YSLL+ A  ++ ++ +       A+AITD N ++  + F +     GI+PI
Sbjct: 3    FVHLQCQTVYSLLKSACKIDELVARAKELGFSALAITDENVMYGVIPFYKACKKMGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    +          + +  +P    +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASV-------FNEEEERAYP----LVLLAENEVGYQNLLKISSTI----MTKSKDG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GL  ++ G  G I++       + AE+   T++ +FG   Y+++Q H 
Sbjct: 108  IPKKWLVHYA-KGLTAISPGKDGEIEQLLLQGKDERAEEVARTYQNMFG-HFYMSVQHHA 165

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D    + ++ +      +P+VATN+  ++++ D    + L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKIEEFVRNMNIPIVATNDVRYINQNDALVQECLLSVQSGTKMTDPDRPRLK 225

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +YLK+ +EM ++FS + EAL NT+ IA RC   +  H   LP+F       +   E 
Sbjct: 226  TDQYYLKSSAEMEALFSHVEEALRNTIHIAERCHVEIPFHVNQLPKF------PVPTNET 279

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            ++  LR     GL  R        G   + +  RL  EL VI+RM FS YFLIV DF+++
Sbjct: 280  SDAYLRRMCEEGLYKRY-------GTPKEVHVNRLYHELEVISRMGFSDYFLIVWDFMKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N I  GPGRGS AGS+ AY L ITDIDP+ ++LLFERFLNP+R+++PD DIDF   R
Sbjct: 333  AHENRILTGPGRGSAAGSLVAYVLEITDIDPIAYNLLFERFLNPERVTLPDIDIDFPDVR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393  RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDLFSKLIPSKLG-- 450

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+   ++S   R+    +   +R+ EI++++EGL RH S HAAG+++   PL++ + +
Sbjct: 451  ITLKEAYEESEALRDFIQGNLLYERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTKSIAI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  L F+    G ++D+  +   
Sbjct: 511  -QEGHNDVYVTQYPADVLEELGLLKMDFLGLRNLTLLENILTFITTTTGKQIDIRNVSLQ 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T G+FQLES GMR  L G++P+  EDI+ + SLYRPGP++ I V+   
Sbjct: 570  DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVVVNSLYRPGPMEQIPVFIES 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+  I  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ 
Sbjct: 630  KHGRRNIQYLHPDLKPILESTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKSRDI 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            ++++++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP
Sbjct: 690  LEEERKHFVQGCLQNGYDQTSAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYP 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            ++F+ A ++  + N +KI ++ ++ ++    ++PPS++     F++  N I YSL +I+ 
Sbjct: 750  LQFMTALLSSAIGNEDKITQYIRETKRKGFCVLPPSLHRSGYHFQIEGNAIRYSLLSIRN 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G  T   ++E     PF  L +FC R+  K +  R LE+ V++G  D F  SR  L  S
Sbjct: 810  IGMATVTALIEEREKAPFQDLFEFCLRMPVKFVTERNLEAFVWSGCFDDFQVSRTTLFNS 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-RFENEQRVLGFYF 963
            +    +YA               A E G  S   ++     E S + +   E+  LGFY 
Sbjct: 870  IKGALEYAS-------------LARELGEESVPKSVYVQGKELSFIEQLNKEKETLGFYL 916

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S +P   Y  +++++ I    +++   +G   R    +   +  +T+K  ++ +VTF + 
Sbjct: 917  SSYPTAQYASLVKELEIPSLAQAMRQ-KGKVQRAIVYITRVKIIRTKKMQKMAFVTFCDQ 975

Query: 1024 AKEYEANFFP 1033
              E EA  FP
Sbjct: 976  NDEMEAVVFP 985


>gi|300814414|ref|ZP_07094685.1| DNA polymerase III, alpha subunit [Peptoniphilus sp. oral taxon 836
            str. F0141]
 gi|300511522|gb|EFK38751.1| DNA polymerase III, alpha subunit [Peptoniphilus sp. oral taxon 836
            str. F0141]
          Length = 1145

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/1050 (36%), Positives = 605/1050 (57%), Gaps = 55/1050 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F+HL VHS YSLL+ +  +  I  +       A+A+TD  N++ A++F +     G++P
Sbjct: 3    NFIHLHVHSEYSLLDASTKIEEIPVRAKELGMKAVALTDHGNMYGAIDFYKACKKVGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  Q +L + ++    +     +VLL    +G + L+++VS +  +D      
Sbjct: 63   IIGCEIYVS-QKSLYLKDRTNERY----HLVLLAENNQGLKNLMKIVS-IAFVDGYYYKP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+ L  L++  ++G+I  +   +G + R         A+K  L ++ +FG D  ++ LQ 
Sbjct: 117  RVDLDVLKKY-SKGIIATSACLAGEVQRLIQRRDYDEAKKAALRYRDIFGKDNFFLELQD 175

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ R   ++ +L+    + L  +N+  +L +ED +A DVL+ +     +  + R +
Sbjct: 176  HGIPEQKRVNRELNRLSKETGISLSCSNDVHYLKKEDAKATDVLLCIQTGAKIKDEKRMK 235

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + YLK+  EM +IFSD  +A+ NT  IA RC+   +     LP F       +   
Sbjct: 236  FPTEEFYLKSAEEMENIFSDNLDAINNTGIIADRCNVDFEFGHYHLPEF------KVPSG 289

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFI 364
              NE      + LE +LA+  + K Y   D   + R + E   I +M F  YFLIV DFI
Sbjct: 290  YTNE------SYLE-KLAKEGLNKRYKVIDKKIKDRFNMEFQTITQMGFVDYFLIVWDFI 342

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             + KKNNI VGPGRGS AGS+ +Y L I DIDPL+F LLFERFLN +R+SMPD DIDFC 
Sbjct: 343  NYVKKNNIQVGPGRGSAAGSIISYGLGIIDIDPLKFDLLFERFLNKERVSMPDIDIDFCY 402

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI YV  KYG ERVAQI+TFG++Q++ A+RDVGR L + YS+VD + K +P+  A
Sbjct: 403  ERREEVIDYVCEKYGDERVAQIVTFGTMQSRQAIRDVGRVLDIAYSRVDYIAKQVPH--A 460

Query: 485  HPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              ++L    D S  F+E    D     L++I++++EGL RH STHAAG+VI   PL+  V
Sbjct: 461  LKMTLDKALDISESFKELYEKDKEARNLIDIAKRIEGLPRHTSTHAAGVVISKNPLTDYV 520

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602
            P+ R+    +  TQFNM  +E+ GL+K DFLGL+TLT+L+ ++  +     VK+D S   
Sbjct: 521  PLTRN--DQIIATQFNMIQLEELGLLKMDFLGLRTLTVLRDAISLVYDNYKVKIDFSEFT 578

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +DD +   +     TLG+FQ ESSGMR  L+ ++PD   D++A  +L+RPGP+  I  + 
Sbjct: 579  YDDEKVLKMFAKAETLGVFQFESSGMRLFLKELKPDAFSDLVAANALFRPGPMKQIPKFI 638

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K+ K KI  IHP+++P+LK+T G I+YQEQVMQI Q++ GYSL  AD++RRA+ KK  
Sbjct: 639  ESKHDKSKISYIHPILEPILKDTYGCIVYQEQVMQIVQIVGGYSLGRADIVRRAISKKKM 698

Query: 723  EEMDKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              M+++++ FI         GA +NG+ +  A  I++L+  FADY FNKSH+ AY+VI+Y
Sbjct: 699  AVMEEERKNFIYGNEKDNVCGAIRNGVDEKSANEIYDLIIDFADYAFNKSHSVAYSVIAY 758

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            ++AW+K +YP EF+AA ++    +++++  + ++ ++  I ++PP+VN    +F V   +
Sbjct: 759  RSAWIKYYYPREFMAAQISTYTSDIKQVSLYIEELKRLGIGLLPPNVNYSQKNFTVEGKK 818

Query: 835  IYYSLAAIKGVGTTTARHIMEASADK--PFDSLEDFCS---RVDSKKLNRRVLESLVFAG 889
            I + L A+K VG      I++A  DK   F SL DF     +V ++ LN++ LESL+  G
Sbjct: 819  IRFGLKAVKNVGENLIEAIVQAR-DKLGNFTSLWDFVDKVQKVSAQVLNKKALESLIRCG 877

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
             LD F  +R Q L   + + +  Q   +N       +F +   +  D   L+ FS+ +  
Sbjct: 878  TLDDFNGNRAQYLAVYEKVMENNQKSIRNNIRGQVTLFGNLNKS-EDLPNLKDFSLRD-- 934

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE------SVATIRGNNIRLAAMVVS 1003
             +   E+ V+G Y SGHPLD Y+P L         E      S + I+  +IR+A ++ +
Sbjct: 935  -KLNMEKEVIGIYVSGHPLDDYRPALISFSNTNTGEIFESYNSSSLIQNKDIRIAGLLKN 993

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K+   T+    + + +  +     E   FP
Sbjct: 994  KKTMITKTNKVMAFASLEDLFGTIELIIFP 1023


>gi|326791665|ref|YP_004309486.1| DNA polymerase III subunit alpha [Clostridium lentocellum DSM 5427]
 gi|326542429|gb|ADZ84288.1| DNA polymerase III, alpha subunit [Clostridium lentocellum DSM
           5427]
          Length = 1155

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/979 (39%), Positives = 569/979 (58%), Gaps = 45/979 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +F HL VH+ YSLL+G+  +N++LD++      ++AITD   +F A++F + A    I P
Sbjct: 4   NFTHLHVHTEYSLLDGSAKINDLLDRVKELGMDSVAITDHGVMFGAIDFYKAAKQRDINP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVP------SIVLLVSTAEGYQRLIELVSRMYLLD 123
           IIGC++ +            +T F   P       +VLL    +GYQ LI++VS  ++ +
Sbjct: 64  IIGCEVYL----------AARTRFDKEPVDARSYHLVLLAENNKGYQNLIKMVSSGFI-E 112

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RL 182
              +  RI +  L+E   EGLI L    +GP+ R    ++ + A+   LT +++ G    
Sbjct: 113 GFYRRPRIDIELLRE-HHEGLIALGACLAGPVSRRLLNDNYEEAKAAALTLEEIMGKGNF 171

Query: 183 YVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           ++ +Q H   D+ + +Q+ ++LA    +P+VATN+  ++ +ED   H+VL+ +     + 
Sbjct: 172 FLEIQDHGIKDQQKVNQLTLRLAEETGIPIVATNDVHYIKDEDANPHEVLLCIQTGKTME 231

Query: 242 QKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            +DR        YLK+ SEM  +F    EALENT +IA+RC      H   LP+F   E 
Sbjct: 232 DEDRMVYEGGQFYLKSPSEMAMLFPYAEEALENTNKIAQRCHVDFTFHELKLPKFDVPEG 291

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
               K  E  LR +   GL+ R             +  +RL++EL +I +M F  YFLIV
Sbjct: 292 ----KTAETFLRERCYEGLKKRYET-------ITPELEERLEYELGIIIQMGFVDYFLIV 340

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            DFI++AK ++IPVGPGRGS AGS+ AY L IT+IDP+++ LLFERFLNP+R+SMPD DI
Sbjct: 341 GDFIKYAKDHDIPVGPGRGSAAGSIVAYTLEITNIDPIKYQLLFERFLNPERVSMPDIDI 400

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DFC +RR EVI YV  KYG +RVAQI+TFG+L A+A +RDVGRA+ MPY+ VD++ K+IP
Sbjct: 401 DFCYERRQEVIEYVIRKYGADRVAQIVTFGTLAARAVIRDVGRAINMPYADVDKVAKMIP 460

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
           N+    +  +A+  +   RE    +  +  LL+ S KLEGL RH+S HAAG+VI ++P+ 
Sbjct: 461 NELKITIK-KALNMNDELRELYNTNEQIKYLLDTSMKLEGLPRHSSMHAAGVVISNKPVV 519

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
           + VP+  +    +  TQ+ M  +E+ GL+K DFLGL+TLT++  ++  + +         
Sbjct: 520 EYVPL--NASEGVVTTQYPMTTLEELGLLKMDFLGLRTLTVIDNAVKLVKKNHDIDIDIE 577

Query: 601 IPFDDH-ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
              D   + Y L+ +  T GIFQLES+GM+  ++ + P C+EDIIA VSLYRPGP+D I 
Sbjct: 578 KIDDHDPKVYELIASGNTEGIFQLESAGMKNFMKELAPTCLEDIIAGVSLYRPGPMDFIP 637

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            Y   K     I   HP ++P+L+ T G I+YQEQVMQI + L+GYSL  +D+LRRAMGK
Sbjct: 638 KYVQGKRDANSITYTHPALEPILENTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMGK 697

Query: 720 KIKEEMDKQKERF-------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           K  + M+K++E F       + G  KN I   I   IF+ +  FA Y FNKSHAAAYAV+
Sbjct: 698 KKIDVMNKEREIFLYGDGDSVPGCVKNNIPAEIGNKIFDEMVDFAKYAFNKSHAAAYAVV 757

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
           +YQTA++KT+Y VEF+AA MT  MD   KI  + +  ++  I+++ P +N     F    
Sbjct: 758 AYQTAYLKTYYKVEFMAALMTSVMDVTTKITGYMETCKRMGIEVLSPDINEGHAYFDANG 817

Query: 833 NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
           ++I Y LAAIK VG      I+E    +  F SL DF +R++SK  N+R +ESL+ AGA 
Sbjct: 818 DKIIYGLAAIKNVGKNVIDRIVEERQRNGRFKSLTDFYNRMESKDTNKRSIESLILAGAF 877

Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSV 950
           D  G  R Q +     I        KN      ++F    +    DK  L      +S  
Sbjct: 878 DHLGGRRSQYMAVYKQIANGINLNRKNNIQGQIDLFGLGSEEVVEDKDHLPDIPEFDSKE 937

Query: 951 RFENEQRVLGFYFSGHPLD 969
               E+ V+G Y SGHPLD
Sbjct: 938 LLNYEKEVMGIYLSGHPLD 956


>gi|226323536|ref|ZP_03799054.1| hypothetical protein COPCOM_01311 [Coprococcus comes ATCC 27758]
 gi|225208220|gb|EEG90574.1| hypothetical protein COPCOM_01311 [Coprococcus comes ATCC 27758]
          Length = 1159

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1060 (36%), Positives = 588/1060 (55%), Gaps = 64/1060 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +   + ++      A AITD   ++  ++F + A AAGI P
Sbjct: 2    NFAHLHVHTEYSLLDGSNKIKEYVARVKELGMTAAAITDHGVMYGVIDFYRAARAAGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC++ +        T  G+        +VLL     GY  L+++VSR +   +G    
Sbjct: 62   VLGCEVYVAPGSRFDKTAVGRDE-DRYYHLVLLAENNTGYANLMKIVSRAFT--EGYYYK 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
                  L E   EG+I L+   +G + R       +  +K  L ++++FG    ++ LQ 
Sbjct: 119  PRVDYELLETYHEGIIALSACLAGEVQRNLARGMYEEGKKAALHYEQIFGKGNFFLELQD 178

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H     R    Q+++L+    + LVATN+  +   ED + HD+L+ +     ++ +DR R
Sbjct: 179  HGIPEQRTVNQQLMRLSQEIGIDLVATNDVHYTYAEDEKPHDILLCLQTGKKLADEDRMR 238

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF----------- 295
                 +Y+K++ EM ++F   PEALENT +IA RC   ++     LP+F           
Sbjct: 239  YEGGQYYVKSKEEMAALFPYAPEALENTQKIADRCHVEIEFGVTKLPKFDVPEGFTSWEY 298

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            + K C D  K    E  + A+                      +RL++EL VI  M +  
Sbjct: 299  LNKLCFDGLKRRYGEDPDPALV---------------------ERLNYELGVIKSMGYVD 337

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DFI +AK N I VGPGRGS AGS+ AY L IT+IDP+R+ LLFERFLNP+R+SM
Sbjct: 338  YFLIVWDFIHFAKSNGIMVGPGRGSAAGSIVAYTLAITNIDPIRYQLLFERFLNPERVSM 397

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DFC +RR EVI YV  KYG +RV QI+TFG+LQA+  LRDVGR + +PY+ VD +
Sbjct: 398  PDIDVDFCFERRQEVIDYVVRKYGKDRVVQIVTFGTLQARGVLRDVGRVMDLPYAFVDSI 457

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             K+IP +    +  +++  +   ++    DP V  L+++S++LEGL RH S HAAG+VI 
Sbjct: 458  AKMIPKELNITLD-KSLKMNHELKKLYDEDPQVKELIDMSKRLEGLPRHTSMHAAGVVIS 516

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
             + + + VP+     +++ VTQF M  +E+ GL+K DFLGL+TLT++Q ++  + +  GV
Sbjct: 517  QKDVDEYVPLALGADNNV-VTQFTMTTLEELGLLKMDFLGLRTLTVIQDAIRLVEKSTGV 575

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            K+    + ++D      + T  T GIFQ+ES+GM+  ++ ++P  +EDIIA +SLYRPGP
Sbjct: 576  KLVTEKLNYNDKAVLDYIGTGKTDGIFQIESAGMKSFMKELRPQSLEDIIAGISLYRPGP 635

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  Y   KN  E I    P + P+L  T G I+YQEQVMQI + L+GYSL  +D++R
Sbjct: 636  MDFIPQYIKGKNHPELITYECPQLKPILAPTYGCIVYQEQVMQIVRDLAGYSLGRSDLVR 695

Query: 715  RAMGKKIKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            RAM KK  + M ++++ F        I G  KNGI + +A  I++ +  FA Y FNKSHA
Sbjct: 696  RAMSKKKGDVMQRERQNFVYGNEEEGIPGCVKNGIDEKVANKIYDEMIDFAKYAFNKSHA 755

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYAV+SYQTA++K +YPVE++AA MT  +DN  K+ ++    RQ  I I+PP +N    
Sbjct: 756  AAYAVVSYQTAYLKYYYPVEYMAALMTSVIDNPGKVAEYIYTCRQMGISILPPDINRGVG 815

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESL 885
            DF V +  I Y LAAIKGVG      I+    +   F  L+DF  R+  K++N+R +E+ 
Sbjct: 816  DFSVDNGNIRYGLAAIKGVGRPVIEQIIRDREEHGTFRDLKDFLERLSGKEVNKRAVENF 875

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLE 941
            + +GA D    +R Q +     I       +KN      ++F      +K  F  ++TL 
Sbjct: 876  IKSGAFDSLKGTRKQFMIIYVQIMDQVAQNKKNSLAGQMSLFDIVDDEQKKEF--EVTLP 933

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVAT-IR-GN 993
                         E+ VLG Y SGHPL+ Y+   RK      +  +  EE+  T +R G+
Sbjct: 934  DVGEYQKETMLAFEKEVLGVYISGHPLEEYEEKWRKSISATTLDFQLDEETGRTKVRDGS 993

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +  M+ SK  K T+K   + ++T  +     E   FP
Sbjct: 994  REIIGGMITSKMIKYTKKNQTMAFITVEDLLGTVEVVIFP 1033


>gi|320159593|ref|YP_004172817.1| DNA polymerase III alpha subunit [Anaerolinea thermophila UNI-1]
 gi|319993446|dbj|BAJ62217.1| DNA polymerase III alpha subunit [Anaerolinea thermophila UNI-1]
          Length = 1321

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/1053 (37%), Positives = 594/1053 (56%), Gaps = 55/1053 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G  +   ++ +      PA+AITD   +F  +EF Q A AAGI+P
Sbjct: 2    SFAHLHVHTQYSLLDGFSNPKQLVARAKEMGMPAVAITDHGTMFGVIEFFQAATAAGIKP 61

Query: 70   IIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IIG +  +    MQD  +     K+ F     ++LL     GYQ L+++ S   L +   
Sbjct: 62   IIGLEAYMAARRMQD--RDPKLDKSSF----HLLLLAENQTGYQNLLKIASAAQL-EGFY 114

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
             + RI   +L E   EGLI  TG  S  I  A      + A K    + ++FG +  +  
Sbjct: 115  YNPRIDHDFLAE-HHEGLICTTGCLSAEIPEALKEGDVERARKLADWYYEVFGAENFFFE 173

Query: 186  LQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            LQ H     +  +R    Q+++L   +    +ATN+  +++ ED    DVL+ +    ++
Sbjct: 174  LQNHDIPELQAVNR----QLIELGKRYNARFIATNDVHYINPEDARLQDVLLCIQTGNLL 229

Query: 241  SQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            S+  R R++ D  YL++  EM  +F+D+PEAL NT+ IA RC+  L      LPRF   E
Sbjct: 230  SEPKRFRMSVDTFYLRSPEEMSRLFADIPEALSNTLLIAERCNVDLTSKGYHLPRFPVPE 289

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYF 357
                    E  LR     GL  R        G  A D   R+RL++EL VI +M F  YF
Sbjct: 290  G----YTAETYLRELCEQGLRRRY-------GTRADDPVVRERLEYELRVIHQMGFDAYF 338

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV D  Q+A++N I     RGS AGS+ AY L IT ++P+   L+FERFLNP R+SMPD
Sbjct: 339  LIVWDLTQYAQRNGIWYN-ARGSAAGSMVAYVLGITMVEPIEHGLIFERFLNPGRISMPD 397

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  D R  ++ Y  ++YG ++VAQIITFG+L AKAA+RDVGR + +P ++VDRL K
Sbjct: 398  IDLDFQDDLRPRMLEYCASRYGDDKVAQIITFGTLGAKAAIRDVGRVMDIPLAEVDRLSK 457

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            ++   P   V++ +A+     F+ A      +  L++ + ++EG+ R+A THAAG+VI D
Sbjct: 458  MLSTAPNKNVTIREALETVPEFKAAYEEADYLRDLIDTAARMEGVVRNAGTHAAGVVITD 517

Query: 537  RPLSQLVPMYRDVRS--DLP---VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             P+ Q +P++R      + P   VTQF M  IE  GL+K DFLGL TLT++Q++   + Q
Sbjct: 518  EPIVQYLPLHRPTSGSEESPIKTVTQFEMSIIESLGLLKVDFLGLATLTIMQRACQLIEQ 577

Query: 592  R-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            R GV+++L  IP DD ETY  L    T G+FQLE SGM + L  M+P  ++ +IA+V+LY
Sbjct: 578  RHGVRLNLHNIPTDDPETYEFLAQGHTAGVFQLEGSGMTRFLVQMRPQTLDHVIAMVALY 637

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  Y  R +G+E +   HP ++P+ KET G+ +YQEQ+M+ A  L+GY++SE+
Sbjct: 638  RPGPLDFIPTYIRRMHGEEPVQYRHPALEPIFKETYGIPVYQEQIMRAAVELAGYTMSES 697

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D LR+A+ KK K+++ K +E+FI GA + GI +  A  IF+   +FA YGFNKSHAA Y 
Sbjct: 698  DELRKAIAKKQKDKLLKHREKFIKGAVQRGIDEETAAAIFDDWEEFARYGFNKSHAADYG 757

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VI+ QTA++K HY  E++ A ++   +  EK+  +  DA+   + ++PP +NT   DF +
Sbjct: 758  VIAVQTAYLKKHYTAEYMTALLSASKNETEKVAFYVADAKNLGVPVLPPDINTSGWDFTI 817

Query: 831  -----GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLES 884
                 G   I + L A+K VG      I++A  +  PF SL DF SRVD + + +R LE 
Sbjct: 818  EDQPDGKPAIRFGLGAVKNVGQNAVEMILQAREEGGPFQSLTDFASRVDLRSVGKRSLEC 877

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT---LE 941
            L+  GALD FG +R  LL+ +D I   +    +  ++     F    G   D I    L 
Sbjct: 878  LIKVGALDRFG-NRKALLEIMDTILNVSASHFRAVSSGQLTFFGATVGANVDAIENIHLP 936

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAM 1000
              +  ++  + E E+ ++G Y S HPL+ Y   +RK  +  Y   +A +R +  + +  M
Sbjct: 937  FTTSMDTREQLEWERELIGLYVSDHPLNPYWNSMRKR-LSYYSNQLADLRNHTPVSVGGM 995

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V   +Q +T+ G  + +VT  +     E   FP
Sbjct: 996  VTRFRQHQTKNGKPMAFVTLEDLRGPIELVIFP 1028


>gi|301646507|ref|ZP_07246382.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           146-1]
 gi|301075293|gb|EFK90099.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           146-1]
          Length = 770

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/787 (44%), Positives = 500/787 (63%), Gaps = 34/787 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
           +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59  DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFLAAS 791
            EF+AA 
Sbjct: 764 AEFMAAG 770


>gi|237750345|ref|ZP_04580825.1| DNA polymerase subunit III [Helicobacter bilis ATCC 43879]
 gi|229373875|gb|EEO24266.1| DNA polymerase subunit III [Helicobacter bilis ATCC 43879]
          Length = 1268

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/1023 (37%), Positives = 599/1023 (58%), Gaps = 78/1023 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L+ +  +I      ++A+TD  N+F A+EF +    AGI+PI
Sbjct: 9    FTHLHLHTEYSLLDGANKLDVLAKRIKELGMNSVAMTDHGNMFGAIEFYKIMKKAGIKPI 68

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129
            IG +  I  +++L      K+P      I L     EGY+ L+ L S+ ++  QG  ++ 
Sbjct: 69   IGIEAYIHNKEDLG----DKSPNTPKFHICLYAKNEEGYKNLMYLSSQSFI--QGFYRTS 122

Query: 130  RICLSWLQEIGTEGLIM----LTGGSSGPIDRAFFFNSSQVAEKRLL------------- 172
            RI    L+E  ++G+I     L G  S  ++ + + +S +  +K ++             
Sbjct: 123  RINKKILREY-SKGIICSSACLNGEISWNLNLSPYMDSKKRDKKIIMGAKGYDGAKEAIH 181

Query: 173  TFKKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             ++ +FGD  Y+ + RH   D R+ ++ +++L+      L+ATN++ + ++ED    +  
Sbjct: 182  EYQDIFGDDFYIEIMRHGIADQRFIDNDLLRLSLETGAKLIATNDAHYTNKEDSSMQEAA 241

Query: 232  MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV--- 287
            M +A +T ++   R R T  + Y+K+  +M+ +F D+PEA+ NT EIA +C   + +   
Sbjct: 242  MMIAMATDINDPKRLRHTVQEFYIKSPKQMLDLFMDIPEAVFNTQEIADKCDLTIDLKDD 301

Query: 288  -HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             + P  P F       E E   IQ E E     K   GL  RL Q  + K  H + Y +R
Sbjct: 302  KNPPTPPSFKFAKEYAENEGLTIQDEAEY-FAYKCKQGLVKRLEQ--VEKDKH-EIYHKR 357

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L  E+++I +MKF GY LIV DFI +AK+N IPVGPGRGS AGS+ AY L ITD+DP+++
Sbjct: 358  LQEEIDIITQMKFPGYMLIVWDFINYAKQNKIPVGPGRGSAAGSLVAYCLEITDVDPIKY 417

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            +LLFERFLNP+R+SMPD D DFCQ RR E+  Y++ KYG   VAQ+ITFG + A+  +RD
Sbjct: 418  NLLFERFLNPERISMPDIDTDFCQRRRPEMFEYMKAKYGEYNVAQVITFGKMLARGVIRD 477

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL------- 512
            V R   M     DR  KLIP+     ++L+    +  F E A   +P +  L+       
Sbjct: 478  VARIYGMSIPNADRFAKLIPSKLG--ITLKGYNKNGNFIEGAYELEPKIQELITEGDNDR 535

Query: 513  ------------EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSD-LPVTQF 558
                        E++ +LE L R+   HAA +V+  ++ L   VP+Y   R+  + VTQ+
Sbjct: 536  DEKNRGLARKVWEMALRLEKLNRNTGKHAAALVVDSEKELWHKVPLYVSERTKGVMVTQY 595

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617
            +MK++E   LIKFDFLGLKTLT++Q +LD +     + ++LS +  +D + Y  L +  T
Sbjct: 596  SMKYLEPVDLIKFDFLGLKTLTVIQDALDIIKDTNNIDINLSTLDVNDEKVYRTLRSGNT 655

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIH 675
            LGIFQLESSGM++    +QP  I+D IAL++L+RPGP+D+ +   Y NRK+G+  +    
Sbjct: 656  LGIFQLESSGMQEFNRRLQPSGIDDAIALLALFRPGPMDSGMSDEYINRKHGRSPVSYTF 715

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
              ++P+LK T GVI+YQEQVMQI Q++ G+SL EAD++RRAMGKK  + M + + +F  G
Sbjct: 716  KELEPILKNTYGVIVYQEQVMQIVQVIGGFSLGEADLVRRAMGKKDAQIMAENRTKFADG 775

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A KNG  +T A  +F+ +AKFA+YGFNKSH+AAY ++++QTA++KT+Y  EF+AA ++ E
Sbjct: 776  AEKNGFDRTKAEELFDQIAKFAEYGFNKSHSAAYGILTFQTAYLKTYYEHEFMAAMLSSE 835

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTA 850
               +E +  +  +AR   I+I+PP VNT   +F V     G  +I + L AIKG G    
Sbjct: 836  SHKIEAVATYIDEARAMGIEILPPHVNTSQTNFSVIIDSNGKKKIVFGLNAIKGAGEGAL 895

Query: 851  RHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I++    K  F +LEDF ++ D K+++++VLE LV +G+LD  GY+R  +L +LD I 
Sbjct: 896  QSIIDDRKQKGAFKNLEDFITKADFKRISKKVLEPLVKSGSLDNLGYTRASMLDNLDYIC 955

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               + + + R+     +F  E+     ++ ++     ++    E E   LG Y SGHPLD
Sbjct: 956  DLGRRMSRERSGG--GLFGAEE--LCPELQIKPLPELHNKSLLEYEYESLGIYLSGHPLD 1011

Query: 970  VYK 972
             ++
Sbjct: 1012 DFR 1014


>gi|45644755|gb|AAS73143.1| predicted DNA polymerase III, alpha subunit [uncultured marine gamma
            proteobacterium EBAC20E09]
          Length = 1148

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/1026 (36%), Positives = 607/1026 (59%), Gaps = 43/1026 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL+V S +S+ +G L+++ I++  +    P++A+TD +N+F  ++F  K  + GI+PI
Sbjct: 5    FSHLRVSSEFSISQGLLTIDQIVENASRLSMPSVALTDKSNMFGMVKFFNKCESVGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  +      + K              I+ L  T  G++ L++++S  +       S  
Sbjct: 65   SGVTIRTIFDGDDKSY-----------EILCLAKTNIGHKNLMKIISNAH----NSNSFN 109

Query: 131  ICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            + +    ++ +  + +++++GG    I      N+ + A K++  F++ FGD   + +QR
Sbjct: 110  VPIIKFDDLISLKDDILIISGGRGTHIFEYLKINNFEDANKKIDKFRESFGDDFILEVQR 169

Query: 189  HRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D       ++ ++Y   +PL+ATN+ LF S++DY+ H+  + +     ++  +R +
Sbjct: 170  TNRSDELEYFKNILPISYEKNIPLIATNDVLFSSQDDYDTHETKVCINTGKTLNDPNREK 229

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---IEKECDDI 303
            +  D  Y K+  EM  +F+D    ++NT EI+++C+  L      LP +    E + D  
Sbjct: 230  LFSDQQYFKSSKEMSLLFNDYSSLVDNTNEISKKCNVSLSTKGYFLPEYPVPKEHDFDSF 289

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             K+  ++  N  ++GL         AK     +Y+ RL++EL+ I +M FS YFLIV DF
Sbjct: 290  IKKLSSDRLNTLISGL---------AKD-KQDEYKSRLNYELDQIKKMGFSSYFLIVYDF 339

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+W+K N++PVGPGRGSGAGS+ AYAL IT +DP++  LLFERFLNP+R+SMPDFD+DFC
Sbjct: 340  IEWSKNNDVPVGPGRGSGAGSLVAYALGITTLDPIKHGLLFERFLNPERLSMPDFDVDFC 399

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI YV  KYG E V+QI TFG++ A+A +RDV RAL  P+   DR+ K+IP  P
Sbjct: 400  MEKRDLVIDYVSQKYGSEAVSQIATFGTMAARAVIRDVTRALGKPHPLGDRIAKMIPFTP 459

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  QA  +   F E    +  V  +++++ KLEG+ R+   HA G+VI    +S   
Sbjct: 460  GITLD-QAKKEQPLFAETIRKEDEVREIVDLAYKLEGIARNVGKHAGGVVIAPGSISDFC 518

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ---KSLDFLAQRGVKVDLSL 600
            P+Y D  SD  +TQ++   +EK GL+KFDFLGL+TLT++    KS++       K+DL+ 
Sbjct: 519  PVYVDRSSDSIMTQYDKDDVEKIGLVKFDFLGLRTLTVIDRAVKSINEDLDEFNKLDLNK 578

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV- 659
            IP DD   +  L++  T  +FQLESSGMR  ++ ++P   E+I AL++LYRPGP+++ + 
Sbjct: 579  IPLDDKNVFKFLSSGKTTAVFQLESSGMRDLIKRLKPTKFEEITALLALYRPGPLNSGMH 638

Query: 660  -VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + +RK+G   +   H L++P+L+ET GVI+YQEQVM+ A++L+G+SL +AD+LRRAMG
Sbjct: 639  DEFVDRKHGNSPVTYPHKLLEPILEETYGVIVYQEQVMEAARVLAGFSLGQADILRRAMG 698

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK KEEM++Q+E F++G +KN IS + A +IF L+ +FA+YGFNKSH+AAYA+ISYQTA+
Sbjct: 699  KKKKEEMEEQREIFVNGCAKNDISTSNAEHIFNLINQFAEYGFNKSHSAAYALISYQTAY 758

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYY 837
            +KT+YP  F+A+ ++ E+ N +KI    Q+  + NI+++ P++      F V  N+ I Y
Sbjct: 759  LKTYYPEYFMASVLSSELSNTDKIYSLIQECSRMNIKVLKPNILLGKKRFFVNANKEIEY 818

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L AIKGV ++   H+ E  A     +L DF  ++D K   ++ LE+L ++GA D    +
Sbjct: 819  GLGAIKGVASSFIDHVCEKRASIKLRNLWDFSQKIDIKLGGKKSLEALSYSGAFDSLAPT 878

Query: 898  RMQLLQSL-DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R   ++ + D ++  A    KN   K  ++FA  +  F      +       + + E E+
Sbjct: 879  RNVAIECVKDMVRDGANRSAKNNL-KSGDLFAQVEEDFDPYEKFKDLPKLKLTEKLEFEK 937

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            + LG+Y SGHP+   +  ++ +     ++   T       L  ++ + +Q K RKG  + 
Sbjct: 938  KSLGYYLSGHPVLAIENKIKNLRTLAIQQ--VTNDTQKASLVCLINNVRQIKDRKGQPLI 995

Query: 1017 WVTFSE 1022
            +V FS+
Sbjct: 996  FVNFSD 1001


>gi|288819165|ref|YP_003433513.1| DNA polymerase III alpha subunit [Hydrogenobacter thermophilus TK-6]
 gi|288788565|dbj|BAI70312.1| DNA polymerase III alpha subunit [Hydrogenobacter thermophilus TK-6]
          Length = 1155

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1052 (38%), Positives = 594/1052 (56%), Gaps = 93/1052 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSLL+GA+ + ++  K       A+AITD  NLF  LEF +     GI+PI
Sbjct: 4    FVHLHLHTQYSLLDGAIKIKDLAKKARELGYKAVAITDHGNLFGILEFYRSMKKEGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS-----IVLLVSTAEGYQRLIELVSRMYLLDQG 125
            IG  ++       +   +GK     +       ++L+     G + L++L S  Y   +G
Sbjct: 64   IG--MEAYFTTGSRHDRKGKASEDNITDRYNHHLILIAMNDTGLKNLMQLSSISY--QEG 119

Query: 126  -KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L +   EGLI +T    G           + A   +  FK LFG+ LY+
Sbjct: 120  FYYKPRIDYEVLSQ-HCEGLIAITACLKGVPTHYASLGDEEKATHWVKKFKDLFGENLYL 178

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ ++  ++   +++ + +A    + L+ATN+S +L+ +D  AH VLMAV     + + 
Sbjct: 179  ELQSNQLPEQEIANRILINIAKKMGVKLIATNDSHYLNPDDRLAHQVLMAVQMKKTLME- 237

Query: 244  DRPRVTPDHYLKNRSEMVSI-------------FSDLPEALENTVEIARRC--SF-ILQV 287
                +  +  +K  +E +               F    EAL+NT+E+A +   SF +L+ 
Sbjct: 238  ----IKQESAIKCSNEGLHFAGPEEVWEKFKGKFEGWEEALKNTLEVAEKVQDSFELLEN 293

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
               + P++     D   K     LR+ AV GL  R+ QG +AK   + +Y  RL++EL V
Sbjct: 294  RGYLFPKY-----DTEDKTTAEFLRHLAVKGLRQRIQQG-LAK--DSPEYWNRLEYELEV 345

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            + RM F GYFLIV DFI WAK  +IPVGPGRGS AGS+ A++L ITDIDP++  LLFERF
Sbjct: 346  VFRMGFEGYFLIVQDFINWAKSQSIPVGPGRGSAAGSLLAFSLGITDIDPIKHGLLFERF 405

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPD D+DFC ++RD+VI YV++KYG E VAQIIT+  ++AK  LRDV RAL +
Sbjct: 406  LNPERISMPDIDVDFCMEKRDKVIEYVKSKYGEENVAQIITYNVMKAKQTLRDVARALGV 465

Query: 468  PYSQVDRLCKLIPN----------DPAHPVSLQAIADD------------SRFREARLAD 505
            PYS  D L KLIP           +  + V ++ + D             S+FR+    +
Sbjct: 466  PYSVADSLAKLIPQGDVQGTWLSLEEMYLVPIKELLDKYGHHRRDIEDHVSKFRKMCSEN 525

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
            P +  L+EI+ KLEGL RH S HAAG+VI   PL + +P+Y D +  +  TQF+M  +E+
Sbjct: 526  PEIKTLVEIALKLEGLTRHTSLHAAGVVISPLPLRERIPLYYD-KDQVLATQFDMVNLEE 584

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GLIK DFLGLKTLT L++    + +R  V ++   +P DD   Y LL    T G+FQLE
Sbjct: 585  LGLIKMDFLGLKTLTELERMKQLVEERHKVSINYLSLPLDDPLVYELLRKGNTTGVFQLE 644

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPML 682
            S GM+  L+ ++PD  +DI+A+++LYRPGP+ + +V  Y NRK+GKE++  I P ++P+L
Sbjct: 645  SVGMKNLLKRLEPDSFDDIVAVLALYRPGPLKSGLVDSYINRKHGKEQVDYIFPELEPVL 704

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            K+T G+I+YQEQVM+I+Q+L+G++  +AD LR+A+GKK KE M + KE+FI GA + G +
Sbjct: 705  KDTYGIIVYQEQVMKISQVLAGFTPGQADTLRKAIGKKKKEVMQEMKEKFIRGALERGYN 764

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
            +   + ++  + +FA Y FNKSH+ AY  ISY TA+MK HYP EF    ++ E  + +K 
Sbjct: 765  QEKVIKLWNDIEEFASYSFNKSHSVAYGYISYWTAYMKAHYPEEFFVVKLSTEKSD-KKF 823

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
                +DA+ F  +I+ P +N   VDF +    +I + LA IKGVG  TAR I+EA   + 
Sbjct: 824  INLIKDAKSFGFEILQPDINESHVDFTIESKGKIRFGLARIKGVGEDTARSIVEARNGR- 882

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            +  L DF   +D +K+N+RVLE+L+ AGA D  G SR +LL  +D   K           
Sbjct: 883  WKGLGDFLKSIDQRKVNKRVLEALIKAGAFDFTGESREKLLSYMDKASK----------- 931

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                      G       L    VE      + E+ VLG Y S HP+D ++ +L   G  
Sbjct: 932  ----------GGVLPLGDLFGTKVEQKVDPLKYEKEVLGIYISKHPVDPFEKLLS--GKV 979

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             + E +  ++        +V   + KKT+ G+
Sbjct: 980  KWLEELEELQEGTYNFVGVVSDLKVKKTKNGT 1011


>gi|224438383|ref|ZP_03659310.1| DNA polymerase III subunit alpha [Helicobacter cinaedi CCUG 18818]
 gi|313144825|ref|ZP_07807018.1| DNA polymerase III subunit alpha [Helicobacter cinaedi CCUG 18818]
 gi|313129856|gb|EFR47473.1| DNA polymerase III subunit alpha [Helicobacter cinaedi CCUG 18818]
          Length = 1144

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/1039 (36%), Positives = 593/1039 (57%), Gaps = 73/1039 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL +H+ YSLL+GA  + N+  +I      ++A+TD  N+F AL+F       G+ P
Sbjct: 2    NFTHLHLHTEYSLLDGANKIKNLAKRIRELGMESVAVTDHGNMFGALDFYVSMKEEGLNP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  I   D L      K  F     + L      GY+ L+ L S+ ++ +      
Sbjct: 62   IIGMEAYIHNGDELN-DKSIKQRF----HLCLFAKNEVGYKNLMYLSSQAFI-NGFYYYP 115

Query: 130  RICLSWLQEIGTEGLIMLTG----------GSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            RI    L+E  +EGL+  +            ++ P +  F     ++A++  L +K +FG
Sbjct: 116  RINKRLLRE-RSEGLVCSSACLQGEVNWQLNTNNPRNVQFGAKGYEMAKEVALEYKDIFG 174

Query: 180  DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +  Y+ + RH   D+ + + Q+++L    ++ ++ATN++ +  ++D +A ++ M VA   
Sbjct: 175  EDFYLEIMRHGINDQLFLDEQILRLGRELDIKVIATNDTHYTFQKDAKAQEIAMCVAMGK 234

Query: 239  VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---------- 287
             ++ KDR + +  + Y+K+  +M  +F D+PE LENT EIA++C   L +          
Sbjct: 235  TLNDKDRLKHSVKEFYVKSPQQMAQLFLDVPEVLENTQEIAQKCRLNLNLKNIEIKNKHT 294

Query: 288  ------HAPILPRFIEKECDDIQKEEENELRN--------------KAVAGLEVRLAQGA 327
                  H+P  P   ++  +  +KE   ++ N              K   GL+ RL    
Sbjct: 295  GEVILEHSPATPPNFKRTQEYAKKENLPQILNCELESIDDAAYFAFKCREGLKERLEH-- 352

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
            IA+  H Q Y+ RL+ E+ +I  MKF GY LIV DF+ +AK+N IPVGPGRGS AGS+ A
Sbjct: 353  IAESKH-QTYKDRLEREIEIINSMKFPGYMLIVWDFVNFAKQNGIPVGPGRGSAAGSLVA 411

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            YAL IT+IDPL++ LLFERFLNP+R+SMPD D+DF Q+RR E+I YV N YG   VAQ++
Sbjct: 412  YALKITNIDPLKYDLLFERFLNPERVSMPDIDMDFSQERRQELIEYVSNTYGKFNVAQVV 471

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            TF SL AK  +RDV R L MP    D   KLIPN+    ++ QA  D      A   +P 
Sbjct: 472  TFNSLLAKGVIRDVARVLDMPLKDADGFAKLIPNELGITLTKQAGKDGKEKDGAWEKEPK 531

Query: 508  VDRLLE----------ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVT 556
            +  L+E           +  LEGL R+   HAA IVI  +  L   VP+Y + + +    
Sbjct: 532  IKELVERNPLAKQVWDYAVLLEGLKRNTGLHAAAIVIDSNDELWNKVPLYTNDKMNGVAV 591

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTK 615
            Q++M W+E   LIKFDFLGLKTL ++  ++  + +R GV +D S +  +D + Y  + + 
Sbjct: 592  QYSMNWLEPVDLIKFDFLGLKTLDVISDAIKLVKKRYGVDIDFSTMDMEDSKVYETIQSG 651

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS 673
             TLG+FQ+ES GM+   + ++P   EDIIA+++LYRPGP+++ ++  + NRK+G   I  
Sbjct: 652  STLGLFQIESEGMQALAKRLKPSNFEDIIAMLALYRPGPMESGMLDDFVNRKHGLASITY 711

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                ++P+LK T GVI+YQEQVMQI Q + G+SL  AD++RRAMGKK  +EM + K+ F 
Sbjct: 712  AFNALEPILKPTYGVIVYQEQVMQIVQTIGGFSLGGADLVRRAMGKKKLDEMLRLKKEFA 771

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
             GA K G ++T A +++EL+ KFA YGFNKSH+AAYA+I+YQTA++KT+Y  EF+AA +T
Sbjct: 772  DGAEKQGYNRTKAEDLWELIVKFAGYGFNKSHSAAYAMITYQTAYLKTYYEHEFMAAMLT 831

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----NRIYYSLAAIKGVGTTT 849
             E   VE + K+  + +   I+I+PP +N    DF VG+     +I + L+AIKG+G + 
Sbjct: 832  SETRKVESVAKYINEVKSLGIEIIPPHINISENDFGVGEFDGVKKIIFGLSAIKGLGESP 891

Query: 850  ARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
              +I+ +   +  + ++EDF +RVD  K+ +R LE L+ +G LD  G+SR  +L+++D +
Sbjct: 892  IENIITDREKNGEYKNVEDFIARVDFSKMTKRSLEPLIKSGGLDGLGFSRHTMLENIDLL 951

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                +  +K       ++F       +  + ++     +     + E   +G Y SGHPL
Sbjct: 952  CDKGREKDKAHEMMSNSLFGEGGVEINVHLPIQDKPEYDIRTLLDYEYECMGIYISGHPL 1011

Query: 969  DVYKPILRKMGIKGYEESV 987
            D +K  L K  IKG  +SV
Sbjct: 1012 DDFKEKLDK--IKGVVKSV 1028


>gi|308752748|gb|ADO46231.1| DNA polymerase III, alpha subunit [Hydrogenobacter thermophilus TK-6]
          Length = 1158

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1052 (38%), Positives = 594/1052 (56%), Gaps = 93/1052 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSLL+GA+ + ++  K       A+AITD  NLF  LEF +     GI+PI
Sbjct: 7    FVHLHLHTQYSLLDGAIKIKDLAKKARELGYKAVAITDHGNLFGILEFYRSMKKEGIKPI 66

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS-----IVLLVSTAEGYQRLIELVSRMYLLDQG 125
            IG  ++       +   +GK     +       ++L+     G + L++L S  Y   +G
Sbjct: 67   IG--MEAYFTTGSRHDRKGKASEDNITDRYNHHLILIAMNDTGLKNLMQLSSISY--QEG 122

Query: 126  -KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L +   EGLI +T    G           + A   +  FK LFG+ LY+
Sbjct: 123  FYYKPRIDYEVLSQ-HCEGLIAITACLKGVPTHYASLGDEEKATHWVKKFKDLFGENLYL 181

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ ++  ++   +++ + +A    + L+ATN+S +L+ +D  AH VLMAV     + + 
Sbjct: 182  ELQSNQLPEQEIANRILINIAKKMGVKLIATNDSHYLNPDDRLAHQVLMAVQMKKTLME- 240

Query: 244  DRPRVTPDHYLKNRSEMVSI-------------FSDLPEALENTVEIARRC--SF-ILQV 287
                +  +  +K  +E +               F    EAL+NT+E+A +   SF +L+ 
Sbjct: 241  ----IKQESAIKCSNEGLHFAGPEEVWEKFKGKFEGWEEALKNTLEVAEKVQDSFELLEN 296

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
               + P++     D   K     LR+ AV GL  R+ QG +AK   + +Y  RL++EL V
Sbjct: 297  RGYLFPKY-----DTEDKTTAEFLRHLAVKGLRQRIQQG-LAK--DSPEYWNRLEYELEV 348

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            + RM F GYFLIV DFI WAK  +IPVGPGRGS AGS+ A++L ITDIDP++  LLFERF
Sbjct: 349  VFRMGFEGYFLIVQDFINWAKSQSIPVGPGRGSAAGSLLAFSLGITDIDPIKHGLLFERF 408

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPD D+DFC ++RD+VI YV++KYG E VAQIIT+  ++AK  LRDV RAL +
Sbjct: 409  LNPERISMPDIDVDFCMEKRDKVIEYVKSKYGEENVAQIITYNVMKAKQTLRDVARALGV 468

Query: 468  PYSQVDRLCKLIPN----------DPAHPVSLQAIADD------------SRFREARLAD 505
            PYS  D L KLIP           +  + V ++ + D             S+FR+    +
Sbjct: 469  PYSVADSLAKLIPQGDVQGTWLSLEEMYLVPIKELLDKYGHHRRDIEDHVSKFRKMCSEN 528

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
            P +  L+EI+ KLEGL RH S HAAG+VI   PL + +P+Y D +  +  TQF+M  +E+
Sbjct: 529  PEIKTLVEIALKLEGLTRHTSLHAAGVVISPLPLRERIPLYYD-KDQVLATQFDMVNLEE 587

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GLIK DFLGLKTLT L++    + +R  V ++   +P DD   Y LL    T G+FQLE
Sbjct: 588  LGLIKMDFLGLKTLTELERMKQLVEERHKVSINYLSLPLDDPLVYELLRKGNTTGVFQLE 647

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPML 682
            S GM+  L+ ++PD  +DI+A+++LYRPGP+ + +V  Y NRK+GKE++  I P ++P+L
Sbjct: 648  SVGMKNLLKRLEPDSFDDIVAVLALYRPGPLKSGLVDSYINRKHGKEQVDYIFPELEPVL 707

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            K+T G+I+YQEQVM+I+Q+L+G++  +AD LR+A+GKK KE M + KE+FI GA + G +
Sbjct: 708  KDTYGIIVYQEQVMKISQVLAGFTPGQADTLRKAIGKKKKEVMQEMKEKFIRGALERGYN 767

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
            +   + ++  + +FA Y FNKSH+ AY  ISY TA+MK HYP EF    ++ E  + +K 
Sbjct: 768  QEKVIKLWNDIEEFASYSFNKSHSVAYGYISYWTAYMKAHYPEEFFVVKLSTEKSD-KKF 826

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
                +DA+ F  +I+ P +N   VDF +    +I + LA IKGVG  TAR I+EA   + 
Sbjct: 827  INLIKDAKSFGFEILQPDINESHVDFTIESKGKIRFGLARIKGVGEDTARSIVEARNGR- 885

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            +  L DF   +D +K+N+RVLE+L+ AGA D  G SR +LL  +D   K           
Sbjct: 886  WKGLGDFLKSIDQRKVNKRVLEALIKAGAFDFTGESREKLLSYMDKASK----------- 934

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                      G       L    VE      + E+ VLG Y S HP+D ++ +L   G  
Sbjct: 935  ----------GGVLPLGDLFGTKVEQKVDPLKYEKEVLGIYISKHPVDPFEKLLS--GKV 982

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             + E +  ++        +V   + KKT+ G+
Sbjct: 983  KWLEELEELQEGTYNFVGVVSDLKVKKTKNGT 1014


>gi|325996713|gb|ADZ52118.1| DNA polymerase III alpha subunit [Helicobacter pylori 2018]
 gi|325998307|gb|ADZ50515.1| DNA polymerase III alpha subunit [Helicobacter pylori 2017]
          Length = 1211

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/1040 (37%), Positives = 598/1040 (57%), Gaps = 75/1040 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ LI  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLI-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + P  P F       ++E  D + ++ +   +KA  GL+ RL    + K  H Q Y++RL
Sbjct: 294  NPPTPPSFKFTKAYAKEEGLDFE-DDASYFAHKAREGLKERLI--LVPKEKHDQ-YKERL 349

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ 
Sbjct: 350  EKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV
Sbjct: 410  LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512
             R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+        
Sbjct: 470  ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNEIAKQ 527

Query: 513  --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
              E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LI
Sbjct: 528  VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587

Query: 570  KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            KFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SGM
Sbjct: 588  KFDFLGLKTLTVIDDALKIIKTQHKIGVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646

Query: 629  RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
             Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T
Sbjct: 647  FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPT 706

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     
Sbjct: 707  YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++
Sbjct: 767  AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856
              + R   I++MPP +N    DF V          + +I + L AIKGVG    ++I+E 
Sbjct: 827  IDEVRALEIEVMPPHINYSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEE 886

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
                 + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +   
Sbjct: 887  RTKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944

Query: 917  KNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDV 970
            K++ N+      ++F   +G   +++ L+   +   ++    E E   LG + SG+PLD 
Sbjct: 945  KDKANEMMQGGNSLFGAMEGGIKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004

Query: 971  YKPILRKMGIKGYEESVATI 990
            +K       IKG++  V +I
Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019


>gi|291542868|emb|CBL15978.1| DNA polymerase III catalytic subunit, DnaE type [Ruminococcus bromii
            L2-63]
          Length = 1174

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/1048 (35%), Positives = 581/1048 (55%), Gaps = 46/1048 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL +H+ YSLL+GA  L+ +          A+AITD   ++ A++F ++    GI+P
Sbjct: 2    AFTHLHLHTEYSLLDGACRLSRLAKAAKEKGMTALAITDHGVMYGAVDFYKECKKQGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  Q     T    + +     +VLL     GYQ LI+LVS+ +  +      
Sbjct: 62   IIGCEVYVAPQSRFDKT----SSYGKYYHMVLLCKNHTGYQNLIKLVSKGFT-EGFYTKP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            RI    L E   EGL+ L+   +G I +         A+ +   ++ +FG +  ++ LQ 
Sbjct: 117  RIDDELLAEY-HEGLVCLSACLAGEIPQKLLDGDYAGAKSKAEFYRDIFGSENFFIELQD 175

Query: 189  HRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ R    ++++A    + +VATN+  ++ ++D   H++L+ +  +  V+  DR  
Sbjct: 176  HGIEEQKRIIPSLIKIAREIGVDIVATNDCHYIEKQDSTVHNILLCIQTNRTVNDSDRME 235

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + YLK   EM  +F+  PEA++NT +IA  C+   +     LPRF      D+   
Sbjct: 236  FKTSEFYLKTEDEMREVFASYPEAIDNTQKIADMCNVDFEFGVRKLPRF------DVPNN 289

Query: 307  EEN--ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            E++    R K   GL     +         Q    RL++E+N +++M F  Y+LIV DF+
Sbjct: 290  EDHLHYFRRKCYEGLYKHYGENP------DQSLIDRLEYEINTVSQMGFVDYYLIVNDFV 343

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AK   IPVGPGRGSGAGS+ AY + IT IDP++++LLFERFLNP+R+SMPDFD+DFC+
Sbjct: 344  SYAKSCQIPVGPGRGSGAGSLCAYCIGITAIDPIKYNLLFERFLNPERVSMPDFDVDFCK 403

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YV  KYG + VAQII+FG++ A+ A+RDVGR L++PY+ VD + KL+P +  
Sbjct: 404  ERRGEVIDYVVRKYGEDHVAQIISFGTMAARGAIRDVGRVLEIPYATVDSVAKLVPME-- 461

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            H +++ +A+      R     DP + +LL+++  +EG+ RHA+ HAAG+VI D+P+S  V
Sbjct: 462  HDMTIEEALKLSPNLRSRCNNDPQIKKLLDVAMSIEGMPRHATMHAAGVVITDKPVSDYV 521

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+ ++   D  VTQF M  +E+ GL+K DFLGL+ LT++  +   +  +    +  ++  
Sbjct: 522  PLSKN--DDNVVTQFTMTALEELGLLKMDFLGLRNLTVINDAEKQIKHKNPDYNPDMVDE 579

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D + + + +   T G+FQ ES GM+  L  ++P+ IED+IA+ +LYRPGP+D+I VY +
Sbjct: 580  NDKKVFEMFSKGYTEGVFQFESQGMKNVLTQLKPERIEDLIAVTALYRPGPMDSIPVYID 639

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             ++    I   HPL+  +L  T G IIYQEQVMQI + L+GYSL  AD++RRAM KK   
Sbjct: 640  CRHNPSHIRYKHPLLKEILGVTSGCIIYQEQVMQIFRTLAGYSLGRADIVRRAMSKKKLA 699

Query: 724  EMDKQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             M+ ++E FI G +            + G+ +  A+++++ +  FA Y FNKSHAAAYA 
Sbjct: 700  VMESEREIFIHGLTDDDGNIIVEGCIRRGVDEKTAISVYDEMESFAHYAFNKSHAAAYAN 759

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISY+TAW+K HYP E++AA ++  +DN  K+  +  + ++  I+++PP+VN   + F V 
Sbjct: 760  ISYKTAWLKCHYPREYMAALLSSVLDNQNKLASYITECKRLGIRVLPPNVNESNLHFTVS 819

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             N I Y L A+K +G      I+    + P++   DFC R+  + +N R +ESL+  GA 
Sbjct: 820  GNDIRYGLLAVKNLGRNFIDEIISERINNPYEDFFDFCKRLYGRNMNSRAIESLIKCGAF 879

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSV 950
            D  G +R QLL     +    ++  +       + F   E    S K  +        S 
Sbjct: 880  DGLGANRRQLLAISKTVLDDVEYESRRNAGGQMSFFDDAEVDAQSSKPKIPDLPEFPVSE 939

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILR-----KMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                E  + G Y SGHPLD Y    +     K G     +S     G  + L  +V   +
Sbjct: 940  LLHMENEIAGMYLSGHPLDEYTTFSKAIHSDKTGDIINNDSGMYFDGKKVNLVCIVAKLK 999

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + T+    + +V   +     E   FP
Sbjct: 1000 TQLTKNNRIMAFVNAEDRYGMLEIVIFP 1027


>gi|225572766|ref|ZP_03781521.1| hypothetical protein RUMHYD_00957 [Blautia hydrogenotrophica DSM
            10507]
 gi|225039823|gb|EEG50069.1| hypothetical protein RUMHYD_00957 [Blautia hydrogenotrophica DSM
            10507]
          Length = 1156

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/1057 (36%), Positives = 597/1057 (56%), Gaps = 60/1057 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +   ++++      + AITD   ++  ++F +   AAGI P
Sbjct: 2    NFTHLHVHTEYSLLDGSNKITEYVERVKELGMDSAAITDHGVMYGCIDFYRACKAAGINP 61

Query: 70   IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I+GC++ +       + T  G+  +     +VLL    +GY  L+++VS+ ++ +     
Sbjct: 62   ILGCEVYVAPSSRFDRETGAGEDRYY---HLVLLAENNQGYSNLMKIVSKSFV-EGFYYK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187
             R+ L+ L+E   EG+I L+   +G + R       +  +K  L ++++FG    ++ LQ
Sbjct: 118  PRVDLALLREY-HEGIIALSACLAGEVARYLTRGMYEEGKKAALRYEEIFGKGNFFLELQ 176

Query: 188  RHRGYDRYRESQVVQLAYTHE---LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             H    +   +Q  QL   H+   + LVATN+  +   ED   HD+L+ +     +S ++
Sbjct: 177  DHGISQQQTVNQ--QLLRMHQETGIDLVATNDVHYTYAEDEAPHDILLCIQTGKKLSDEN 234

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R V   +Y+K+  +M  +F    EALENT +I +RC   ++     LP++     D  
Sbjct: 235  RMRYVGGQYYVKSAEQMAELFPYALEALENTYKIGQRCHVDIEFGVTKLPKY-----DVP 289

Query: 304  QKEEENELRNK-AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +     E  NK    GLE R            ++ RQRL +EL+ I  M +  YFLIV D
Sbjct: 290  EGYTSWEYLNKLCFEGLEERYQP-------VTEELRQRLSYELDTIKNMGYVDYFLIVWD 342

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI++A+ + I VGPGRGS AGS+ +Y L IT +DP+R+ LLFERFLNP+R+SMPD D+DF
Sbjct: 343  FIKYARDHGIMVGPGRGSAAGSLVSYTLGITKLDPMRYDLLFERFLNPERVSMPDIDVDF 402

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  KYG +RV QI+TFG+L A+  +RDVGR L MPYSQVD + K+IP +
Sbjct: 403  CFERRQEVIDYVVKKYGKDRVVQIVTFGTLAARGVIRDVGRVLDMPYSQVDTIAKMIPTE 462

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                + L A+  +    +    DP +  L++++++LEGL RH S HAAG+VI  + + + 
Sbjct: 463  LNITIDL-ALKKNPELAKVYEEDPEIHHLIDMAKRLEGLPRHTSMHAAGVVISQKDVDEY 521

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLI 601
            VP+ R        TQF M  +E+ GL+K DFLGL+TLT++Q +++ + A +G+ +D+  I
Sbjct: 522  VPLSR-AADGTITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVELVEADKGIHLDMDAI 580

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             ++D +    L T  T G+FQLES GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y
Sbjct: 581  DYNDPKVLDSLGTGHTDGVFQLESGGMKSFMKELKPQSLEDVIAGISLYRPGPMDFIPQY 640

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               KN  E I    P ++P+LK T G I+YQEQVMQI + L GY+L  +D+LRRAM KK 
Sbjct: 641  IRGKNHPETITYDCPQLEPILKATYGCIVYQEQVMQIVRNLGGYTLGRSDLLRRAMSKKK 700

Query: 722  KEEMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               M+K+++ F+ G  +        NGI + IA  I++ +  FA Y FNKSHAAAYAV+S
Sbjct: 701  ASVMEKERQSFVYGNEEEGVPGCINNGIDEKIANRIYDNMIDFAKYAFNKSHAAAYAVVS 760

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K +YPVEF+AA MT  +DN  K+ ++    R+  IQI+PP +N     F V   
Sbjct: 761  YQTAFLKYYYPVEFMAALMTSVIDNPGKVSEYIFTCRKMGIQILPPDINRGETVFSVDHG 820

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y+LAAIK +G +    I+ E   +  F S++DF +R+++K +N+R LE+ + AGA D
Sbjct: 821  AIRYALAAIKSIGKSVIDEIVKERKTNGEFVSMKDFVTRINNKDINKRSLENFIKAGAFD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSV 950
            C   +R Q +     + + A   +KN      ++F    E+     +I L K    +   
Sbjct: 881  CLEGNRRQQMMVYPLVMESAIQEKKNMMAGQMSLFDLVGEEDKKDYEIQLPKVEEYDQDT 940

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRK--------------MGIKGYEESVATIRGNNIR 996
                E+ VLG Y SGHPL+ Y+ ++ K               G    ++ V  I G    
Sbjct: 941  LLNFEKEVLGIYISGHPLEKYRALMEKNVTAWTSDFQPDEETGFPKVKDGVKAIIG---- 996

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               M+  K+ K TR    + ++T  +     E   FP
Sbjct: 997  --GMITEKKVKYTRTNKVMAFLTLEDLVGIVEVVVFP 1031


>gi|300949784|ref|ZP_07163758.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           116-1]
 gi|300450816|gb|EFK14436.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           116-1]
          Length = 788

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/787 (43%), Positives = 499/787 (63%), Gaps = 34/787 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
           +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59  DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFLAAS 791
            EF+A  
Sbjct: 764 AEFMAGG 770


>gi|145652210|gb|ABP88150.1| putative DnaE [Borrelia lonestari]
          Length = 1072

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/928 (39%), Positives = 559/928 (60%), Gaps = 34/928 (3%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            ++LL     GY+ L++L S  YL +      RI  S +++  ++GLI  +    G I + 
Sbjct: 18   LILLAKNELGYKNLLKLTSISYL-EGFYYRPRIDKSDIEKY-SKGLICTSACIGGIIPQL 75

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHEL--PLVATNN 216
                    A+  +L FK +FGD  Y+ LQRH G  +        + Y+ EL  PL  +N+
Sbjct: 76   IIAGRFDDAKNEILWFKTVFGDDFYLELQRH-GIKQQDMVNKKLIGYSKELNVPLTVSND 134

Query: 217  SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTV 275
            S ++++ED +A D+++ +   + ++  +R ++  D  Y+K++ EM  +F DLPEAL NT+
Sbjct: 135  SHYVNKEDAKAQDIIICIGTGSKINDPNRLKMETDEFYIKSQEEMYELFKDLPEALANTL 194

Query: 276  EIARRCS-FILQVHAPILPRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
            EIA +C  F ++   PI P + I  E   + +     L      GL+ R           
Sbjct: 195  EIAEKCDEFEIKFPGPIFPEYQIPSEFSTLGQY----LEYLTFEGLKFRYDN-------I 243

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
                ++R  +EL+ I +M F  YFLIV DFI++A  N IPVGPGRGSGAGS+ AYAL +T
Sbjct: 244  NDSIKERALYELSTIIKMGFEAYFLIVWDFIKFAHDNGIPVGPGRGSGAGSIVAYALRVT 303

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            DIDPL+++LLFERFLNP+R+SMPDFDIDFC + RDEVI+YV +KYG +RVAQIITFG+L+
Sbjct: 304  DIDPLKYNLLFERFLNPERVSMPDFDIDFCFEGRDEVIKYVTSKYGEDRVAQIITFGTLK 363

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV-DRLL 512
             KA  +DVGR L +P+S+ + + KLIP+ P   V L+ +  D   R A L   S+ + L+
Sbjct: 364  PKAVFKDVGRVLDIPFSESNEITKLIPDGPK--VCLKEVFADGALR-AYLNKGSIYNELM 420

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
              +  LEG+ RH STHAAGIVI    L+  VP+Y+D + +   TQ+ M  +E  GL+K D
Sbjct: 421  NAALVLEGMNRHVSTHAAGIVIAKTALTDYVPLYKDYKQNTVSTQYTMDLLEDCGLVKMD 480

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            FLGLKTLTL++ +   +        ++ I   D +T+ +L    +  +FQ ES GM+Q L
Sbjct: 481  FLGLKTLTLIKNAEKLIRITNPDFSIANISDSDPKTFKMLAEGRSASVFQFESEGMQQVL 540

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
               +PD IED+IAL +LYRPGP+  I  + + K G ++I   HP +  +LK T GVI+YQ
Sbjct: 541  REAKPDSIEDLIALNALYRPGPMQFIPQFISAKTGIKRIKYPHPDLKDVLKPTYGVIVYQ 600

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM++A++++G+SL +AD+LRRAMGKK ++EM++ K  FI GA   G  +++A++IFEL
Sbjct: 601  EQVMEVAKIIAGFSLGKADILRRAMGKKKEDEMNRMKVDFIKGAISKGYDESLAIDIFEL 660

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA+YGFNKSHAAAY++I+YQTA++K +YP  F+AA++T E++N EK+  + ++A+  
Sbjct: 661  LKPFANYGFNKSHAAAYSLIAYQTAYLKANYPENFMAANLTNEINNTEKLSYYIEEAKLM 720

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSR 871
             I ++ P +N    +F+V D +I Y L  IK +G +    I+ E   +  + S EDF  R
Sbjct: 721  GIDVLKPDINQSFKEFRVVDCKISYGLNGIKNIGGSMVDLIIAERQKNSEYKSFEDFVRR 780

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--- 928
            VD K +N++ LES + +G  D  G +R  L ++LD +       + +R     ++F+   
Sbjct: 781  VDDKVINKKFLESAIKSGLFDSLGQNRRTLFENLDRLIDVVTQDKNDRKFGQNSLFSIFG 840

Query: 929  ---HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                   +FS  I  E   +E   + FE E  +LGFY SGHPLD YK  +         E
Sbjct: 841  PQDVAYKSFSYDIFEEYSYIE--LLGFEKE--LLGFYVSGHPLDPYKTEIECFTDFNILE 896

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +A  + + ++ A ++ S +   T++ +
Sbjct: 897  DLAIKKDSTVKFAGILNSIRVIHTKRNN 924


>gi|109946747|ref|YP_663975.1| DNA polymerase III subunit alpha [Helicobacter acinonychis str.
            Sheeba]
 gi|109713968|emb|CAJ98976.1| DNA polymerase III, alpha chain [Helicobacter acinonychis str.
            Sheeba]
          Length = 1209

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/1088 (36%), Positives = 617/1088 (56%), Gaps = 82/1088 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKETKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSMTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+ L S  YL  +
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLMYLSSMAYL--E 113

Query: 125  GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ----------VAEKRLLT 173
            G     RI    L+E  ++G+I  +    G ++     NS +           A+K    
Sbjct: 114  GFYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNSERNRRYGAKGYDEAKKIACE 172

Query: 174  FKKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            ++++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M
Sbjct: 173  YQEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAM 232

Query: 233  AVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---- 287
             VA    ++ + R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +    
Sbjct: 233  CVAMGKTLNDQGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDK 292

Query: 288  -HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             + P  P F       + E  D + ++ +   +KA  GL+ RL    + K  H Q YR+R
Sbjct: 293  KNPPTPPSFKFTKTYAQNEGLDFE-DDASYFAHKAREGLKERLI--LVPKEKHEQ-YRER 348

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L+ E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++
Sbjct: 349  LEKEIEVITNMKFPGYMLIVWDFIRYAKERGIPVGPGRGSAAGSLVAFALKITDIDPLKY 408

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RD
Sbjct: 409  DLLFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRD 468

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL------- 512
            V R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+       
Sbjct: 469  VARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNDTAR 526

Query: 513  ---EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
               E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   L
Sbjct: 527  QVWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDL 586

Query: 569  IKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            IKFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SG
Sbjct: 587  IKFDFLGLKTLTVIDDALKIIKTQHQIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SG 645

Query: 628  MRQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE 684
            M Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK 
Sbjct: 646  MFQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKP 705

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G    
Sbjct: 706  TYGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMAGNKAKFVEGAKNLGHDGQ 765

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
             A+N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + +
Sbjct: 766  KAINLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVAR 825

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVG-------DNRIYYSLAAIKGVGTTTARHIMEAS 857
            +  + R   I++MPP +N+   DF V        + +I + L AIKGVG+   ++I+E  
Sbjct: 826  YIDEVRALEIEVMPPHINSSMQDFSVAEFKNEKVEKKIVFGLGAIKGVGSEPIKNIIEER 885

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
                + +LEDF SR+D  KL ++ LE LV +G+LD  GY+R  +L +LD I    +   K
Sbjct: 886  TKGDYKNLEDFISRMDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDVGR--AK 943

Query: 918  NRTNKH----ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            ++ N+      ++F   +    +++ L+       ++ +  E E   LG + SG+PLD +
Sbjct: 944  DKANEMMQGGNSLFGAMESETREQVILDMADLGEHDAKMLLEYEYETLGIHVSGNPLDEF 1003

Query: 972  KPILRKMGIKGYEESVATIRGNNIR-------LAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            K       IKG++  V +I    +        L  ++  K++   R G   G     +  
Sbjct: 1004 KE-----EIKGFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTAEILDRY 1058

Query: 1025 KEYEANFF 1032
             ++E  FF
Sbjct: 1059 GKFELMFF 1066


>gi|15646069|ref|NP_208251.1| DNA polymerase III subunit alpha [Helicobacter pylori 26695]
 gi|2494191|sp|P56157|DPO3A_HELPY RecName: Full=DNA polymerase III subunit alpha
 gi|2314638|gb|AAD08502.1| DNA polymerase III alpha-subunit (dnaE) [Helicobacter pylori 26695]
          Length = 1211

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1040 (37%), Positives = 598/1040 (57%), Gaps = 75/1040 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  ++      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + P  P F       + E  + + ++ +    KA  GL+ RL    + K  H Q Y++RL
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFE-DDASYFAYKAREGLKERLV--LVPKEKHDQ-YKERL 349

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ 
Sbjct: 350  EKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV
Sbjct: 410  LLFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512
             R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+        
Sbjct: 470  ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527

Query: 513  --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
              E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LI
Sbjct: 528  VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587

Query: 570  KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            KFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SGM
Sbjct: 588  KFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646

Query: 629  RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
             Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T
Sbjct: 647  FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPT 706

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     
Sbjct: 707  YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++
Sbjct: 767  AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856
              + R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E 
Sbjct: 827  IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEE 886

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
             A   + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +   
Sbjct: 887  RAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944

Query: 917  KNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDV 970
            K++ N+      ++F   +G   +++ L+   +   ++    E E   LG + SG+PLD 
Sbjct: 945  KDKANEMMQGGNSLFGAMEGGTKEQVVLDMIDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004

Query: 971  YKPILRKMGIKGYEESVATI 990
            +K       IKG++  V +I
Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019


>gi|308183558|ref|YP_003927685.1| DNA polymerase III subunit alpha [Helicobacter pylori PeCan4]
 gi|308065743|gb|ADO07635.1| DNA polymerase III subunit alpha [Helicobacter pylori PeCan4]
          Length = 1211

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1040 (37%), Positives = 598/1040 (57%), Gaps = 75/1040 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A++    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKRIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + P  P F       ++E  D + ++ +   +KA  GL+ RL    + K  H Q Y++RL
Sbjct: 294  NPPTPPSFKFTKAYAKEEGLDFE-DDASYFAHKAREGLKERLI--LVPKEKHDQ-YQERL 349

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ 
Sbjct: 350  EKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV
Sbjct: 410  LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512
             R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+        
Sbjct: 470  ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527

Query: 513  --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
              E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LI
Sbjct: 528  VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587

Query: 570  KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            KFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SGM
Sbjct: 588  KFDFLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646

Query: 629  RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
             Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T
Sbjct: 647  FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPT 706

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     
Sbjct: 707  YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++
Sbjct: 767  AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856
              + R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E 
Sbjct: 827  IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEE 886

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
             A   + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +   
Sbjct: 887  RAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944

Query: 917  KNRTNKH----ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            K++ N+      ++F    G   +++ L+       ++    E E   LG + SG+PLD 
Sbjct: 945  KDKANEMMQGGNSLFGAMDGGTKEQVILDMTDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004

Query: 971  YKPILRKMGIKGYEESVATI 990
            +K       IKG++  V +I
Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019


>gi|317014874|gb|ADU82310.1| DNA polymerase III subunit alpha [Helicobacter pylori Gambia94/24]
          Length = 1211

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/1041 (37%), Positives = 596/1041 (57%), Gaps = 77/1041 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A++    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKRIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRFIEKECDDIQKEEENELRN-------KAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            + P  P F  K      KEE  +  +       KA  GL+ RL    + K  H Q Y++R
Sbjct: 294  NPPTPPSF--KFTKAYAKEEGLDFEDDASYFAYKAREGLKERLI--LVPKEKHDQ-YKER 348

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L+ E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++
Sbjct: 349  LEKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKY 408

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RD
Sbjct: 409  DLLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRD 468

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL------- 512
            V R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+       
Sbjct: 469  VARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNEVAK 526

Query: 513  ---EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
               E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   L
Sbjct: 527  QVWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDL 586

Query: 569  IKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            IKFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SG
Sbjct: 587  IKFDFLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SG 645

Query: 628  MRQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE 684
            M Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK 
Sbjct: 646  MFQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKP 705

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G    
Sbjct: 706  TYGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQ 765

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
             A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + +
Sbjct: 766  KAANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVAR 825

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIME 855
            +  + R   I++MPP +N+   DF V          + +I + L A+KGVG    ++I+E
Sbjct: 826  YIDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIE 885

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
              A   + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  
Sbjct: 886  ERAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR-- 943

Query: 916  EKNRTNKH----ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLD 969
             K++ N+      ++F   +G   +++ L+       ++    E E   LG + SG+PLD
Sbjct: 944  AKDKANEMMQGGNSLFGAMEGGTKEQVILDMADLGEHDAKTLLECEYETLGIHVSGNPLD 1003

Query: 970  VYKPILRKMGIKGYEESVATI 990
             +K       IKG++  V +I
Sbjct: 1004 EFKE-----EIKGFKNLVKSI 1019


>gi|157693324|ref|YP_001487786.1| DNA polymerase III DnaE [Bacillus pumilus SAFR-032]
 gi|157682082|gb|ABV63226.1| DNA-directed DNA polymerase III alpha subunit [Bacillus pumilus
            SAFR-032]
          Length = 1111

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1041 (36%), Positives = 587/1041 (56%), Gaps = 69/1041 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+VHLQVHS YSLL  A  +  ++ K       A+A+TD + ++  +EF ++     I+P
Sbjct: 2    SYVHLQVHSGYSLLSSAAKVKELVLKAKELGYKALALTDDHVMYGTVEFYKECKKHDIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG    + + +      Q    +P    +VLL    EGYQ LI++ S +    + K   
Sbjct: 62   VIGLTASVFIDE------QETEAYP----LVLLAKNNEGYQNLIKISSVL----KSKSKA 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
             +   WL+     GLI +T G SG I+     +  + A       K +FG+  +Y+ LQ 
Sbjct: 108  GLKEKWLKSY-HRGLIAITPGVSGYIETLLQHDQIEEAHHAAKQLKHIFGEGHVYIALQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +  D    +++  ++   ++PLVAT +  ++  ED  A+  L A+     + + +  R 
Sbjct: 167  FQQ-DESLVAKLRDVSKMADIPLVATGDVHYIKREDKMAYTCLKAIKAGQQLPEVEEDRA 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + + +   EM   ++   E L  TVEIA RC   L +    LP +   +    Q   +
Sbjct: 226  --EKHFRTFEEMKEWYTQDTELLTRTVEIADRCEVDLNLGQTKLPSYPTPD----QSTAD 279

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     G++ R      A       Y +RL++EL++I +M FS YFLIV DF+++A 
Sbjct: 280  QFLRKVCAEGMKQRKIASNDA-------YVKRLEYELSIIQKMNFSDYFLIVWDFMKYAH 332

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I  GPGRGS AGS+ AY L ITD+DPL   LLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 333  DQGIVTGPGRGSAAGSLVAYVLFITDVDPLCHGLLFERFLNPERISMPDIDIDFPDTRRD 392

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+I YV++KYG   VAQI+TFG+L AKAALRDVGR + +     DRL KLIP+ P     
Sbjct: 393  EIISYVKDKYGDMHVAQIVTFGTLAAKAALRDVGRVMGIDSKAADRLAKLIPSKPG---- 448

Query: 489  LQAIADDSRFREARLADPSVDRLL----EISQ------KLEGLYRHASTHAAGIVIGDRP 538
                   +  +EA  A P +  +L    E+SQ      K+EGL RH STHAAG+V+ + P
Sbjct: 449  -------TTLKEALTASPELKTMLQQSEELSQVFQTALKVEGLPRHTSTHAAGVVLSEEP 501

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597
            L+++VP+ +D    + +TQ+ M ++E  GL+K DFLGL+ LTL++   + +  Q  V ++
Sbjct: 502  LTEIVPI-QDGHDGVYLTQYAMNYLEDLGLLKMDFLGLRNLTLIESIKNQIERQENVHIN 560

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
             S I ++D +T+ LL+   T GIFQLES GMRQ L  ++P  +EDI+A+ +LYRPGP++N
Sbjct: 561  FSDISYEDQKTFELLSAGDTTGIFQLESQGMRQVLRRLKPSSLEDIVAVNALYRPGPMEN 620

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I ++ +RK+G+ K+   HP +  +LK+T GVI+YQEQ+M IA  ++G+ L EAD+LRRA+
Sbjct: 621  IPLFIDRKHGRVKVSYPHPDLYDILKDTYGVIVYQEQIMLIAAKMAGFQLGEADLLRRAV 680

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             KK K+ +D+++  F+ G  K      IA ++++L+ KFA+YGFN+SHA AY++I +Q A
Sbjct: 681  SKKDKKVLDEERSHFVEGCLKKEYPVNIANDVYDLIVKFANYGFNRSHAVAYSMIGFQLA 740

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYP+ F+   +T  + N +K+ ++  +A++  I ++ PS+N     F V    I Y
Sbjct: 741  YLKAHYPLYFMCGLLTSVIGNQDKVAQYFYEAKEKGISVLKPSINKSEFPFTVEKGEIRY 800

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            SL AIK VG +  + I  A  +KPF+ L DFC+RV +K +NR+ +E+L+F+GA+D    +
Sbjct: 801  SLRAIKNVGVSAVKDIYRARQEKPFEDLFDFCARVSAKSVNRKTIEALIFSGAMDELYPN 860

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL S+D    +  ++     N  + +      TFS K    +          + E+ 
Sbjct: 861  RASLLASIDIALDHVSFL-----NPDDQLDFLGDTTFSIKPKYAEIEELPLVDLLQFEKE 915

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-----GNNIRLAAMVVSKQQKKTRKG 1012
             LG Y S HP+  Y+  LR+ G      +V  IR        + +  ++   +  +T+ G
Sbjct: 916  ALGLYLSNHPVQAYRDRLRENG------AVEIIRLSSFIKRKVSMGGLLTKVKSIRTKNG 969

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + +VTF +   E E   FP
Sbjct: 970  QSMAFVTFGDETGEMEGVVFP 990


>gi|317011593|gb|ADU85340.1| DNA polymerase III subunit alpha [Helicobacter pylori SouthAfrica7]
          Length = 1211

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1041 (37%), Positives = 599/1041 (57%), Gaps = 77/1041 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++K+ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKKTKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+ L S  YL  +
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-ASKETKQRF----HLCLFAKNQEGYENLMYLSSMAYL--E 113

Query: 125  GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLT 173
            G     RI    L+E  ++G+I  +    G ++          R +       A+K    
Sbjct: 114  GFYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRRYGAKGYDEAKKIACE 172

Query: 174  FKKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            ++++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M
Sbjct: 173  YQEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAM 232

Query: 233  AVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---- 287
             VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +    
Sbjct: 233  CVAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDK 292

Query: 288  -HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             + P  P F       + E  D + ++ +   +KA  GL+ RL    + K  H Q Y++R
Sbjct: 293  KNPPTPPSFKFTKAYAQNEGLDFE-DDASYFAHKAREGLKERLI--LVPKEKHEQ-YKER 348

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L+ E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++
Sbjct: 349  LEKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKY 408

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RD
Sbjct: 409  DLLFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRD 468

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL------- 512
            V R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+       
Sbjct: 469  VARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNDIAK 526

Query: 513  ---EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
               E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   L
Sbjct: 527  QVWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDL 586

Query: 569  IKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            IKFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SG
Sbjct: 587  IKFDFLGLKTLTVIDDALKIIKTQHQISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SG 645

Query: 628  MRQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE 684
            M Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK 
Sbjct: 646  MFQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKP 705

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G    
Sbjct: 706  TYGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQ 765

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
             A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + +
Sbjct: 766  KAANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVAR 825

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIME 855
            +  + R   I++MPP +N+   DF V          + +I + L AIKGVG+   ++I+E
Sbjct: 826  YIDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGSEPIKNIIE 885

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
                  + +LEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  
Sbjct: 886  ERTKGDYKNLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR-- 943

Query: 916  EKNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLD 969
             K++ N+      ++F   +    +++ L+   +   ++    E E   LG + SG+PLD
Sbjct: 944  AKDKANEMMQGGNSLFGAMESETREQVILDMVDLGEHDAKTLLEYEYETLGIHVSGNPLD 1003

Query: 970  VYKPILRKMGIKGYEESVATI 990
             +K       +KG++  V +I
Sbjct: 1004 EFKE-----EVKGFKNLVKSI 1019


>gi|317010167|gb|ADU80747.1| DNA polymerase III subunit alpha [Helicobacter pylori India7]
          Length = 1211

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1040 (37%), Positives = 597/1040 (57%), Gaps = 75/1040 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + P  P F       + E  D + ++ +    KA  GL+ RL    + K  H Q Y++RL
Sbjct: 294  NPPTPPSFKFTKAYAQNERLDFE-DDASYFAYKAREGLKERLI--LVPKEKHDQ-YKERL 349

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ 
Sbjct: 350  EKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV
Sbjct: 410  LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512
             R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+        
Sbjct: 470  ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527

Query: 513  --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
              E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LI
Sbjct: 528  VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587

Query: 570  KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            KFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SGM
Sbjct: 588  KFDFLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646

Query: 629  RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
             Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T
Sbjct: 647  FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPT 706

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     
Sbjct: 707  YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++
Sbjct: 767  AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856
              + R   I++MPP +N+   DF V          + +I + L A+KGVG    ++I+E 
Sbjct: 827  IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEE 886

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
             A   + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +   
Sbjct: 887  RAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944

Query: 917  KNRTNKH----ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            K++ N+      ++F   +G   +++ L+       ++    E E   LG + SG+PLD 
Sbjct: 945  KDKANEMMQGGNSLFGAMEGGTKEQVILDMTDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004

Query: 971  YKPILRKMGIKGYEESVATI 990
            +K       IKG++  V +I
Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019


>gi|229006940|ref|ZP_04164570.1| DNA polymerase III subunit alpha [Bacillus mycoides Rock1-4]
 gi|228754340|gb|EEM03755.1| DNA polymerase III subunit alpha [Bacillus mycoides Rock1-4]
          Length = 1096

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/1018 (36%), Positives = 594/1018 (58%), Gaps = 52/1018 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L+ A  ++ ++ +       +++ITD N ++  + F +     G++PIIG    +    
Sbjct: 1    MLKSACKIDELVSRAKELGFSSLSITDENVMYGVIPFYKACKKNGVRPIIGLTASV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                + + +  +P    +VLL     GYQ L+++ S +      K    I   WL     
Sbjct: 57   ---FSEEEEQSYP----LVLLAENEMGYQNLLKISSTI----MTKSKDGIPKKWLSHYA- 104

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQV 200
            +GLI ++ G  G I++       ++AE+    ++ +FG   Y++LQ H   D  + + ++
Sbjct: 105  KGLIAISPGKDGEIEQLLLQGRDEIAEEVARAYQNMFGS-FYMSLQHHAIQDELFLQEKL 163

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSE 259
             Q A    +P+VATN+  ++++ D    + L++V   T ++  DRPR+  D +YLK+ +E
Sbjct: 164  PQFANEINIPVVATNDVRYVNQSDALVQECLLSVQSGTKMTDPDRPRLKTDQYYLKSSAE 223

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M ++FS   EAL+NTV IA RC   +  H   LP+F             NE  +  +   
Sbjct: 224  MEALFSHAEEALQNTVCIAERCHVEIPFHVNQLPKF---------PVPSNETSDAYLR-- 272

Query: 320  EVRLAQGAIAKGYHA-QD-YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
              R+ +  + K Y A QD +R+RL+ EL VI+ M FS YFLIV DF+++  ++ I  GPG
Sbjct: 273  --RICEDGLNKRYGAVQDVHRKRLNHELEVISCMGFSDYFLIVWDFMKYGHEHGILTGPG 330

Query: 378  RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
            RGS AGS+ +Y L ITDIDP+ ++LLFERFLNP+R+++PD DIDF   RRDE+IRYV++K
Sbjct: 331  RGSAAGSLVSYVLEITDIDPIEYNLLFERFLNPERVTLPDIDIDFPDIRRDEMIRYVKDK 390

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            YG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +  +A  +   
Sbjct: 391  YGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSRVGITLK-EAYEESGS 449

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
             RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V + ++  +D+ VTQ
Sbjct: 450  LREFVQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI-QEGHNDVYVTQ 508

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKG 616
            +  + +E+ GL+K DFLGL+ LTLL+  L F+  + G ++D+  +P  D +T+ LL    
Sbjct: 509  YPAEVLEELGLLKMDFLGLRNLTLLENILTFIVNKTGKQIDIRNLPLQDEKTFQLLGRGD 568

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            T G+FQLES GMR  L  ++P+  EDI+A+ +LYRPGP++ I  +   K+GK +I  +H 
Sbjct: 569  TTGVFQLESGGMRNVLRSLKPNEFEDIVAVNALYRPGPMEQIPTFIESKHGKCQIHYLHS 628

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
             + P+LK T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK +E +D++++ F+ G 
Sbjct: 629  DLKPILKSTYGVIVYQEQIMQIASQLAGFSLGEADLLRRAVSKKNREILDQERKHFVQGC 688

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP+EF+ A ++  +
Sbjct: 689  LRNGYDETSAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYPLEFMTALLSSAI 748

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
             N +KI ++ ++ ++    ++PPS++    +F++  N I YSL +I+ +G  T   ++E 
Sbjct: 749  GNEDKIVQYIRETKRKGFHVLPPSLHRSSYNFQIEGNAIRYSLLSIRNIGMATVNAVIEE 808

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
                PF  L +FC R+ +K +  R LE+ V+AG  D F  SR  L  S+    +YA    
Sbjct: 809  RERNPFQDLFEFCLRMPAKFVTERNLEAFVWAGCFDDFQVSRTTLFNSIKGALEYAS--- 865

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-RFENEQRVLGFYFSGHPLDVYKPIL 975
                       A E G  S   ++     E S + +  NE+  LGFY S +P   Y  ++
Sbjct: 866  ----------LARELGEESVPKSVYVQGEELSFIEQLNNEKEALGFYLSSYPTAQYAKLV 915

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +++ I    +++   R N  R    V   +  +T+K  ++ +VTF +   E EA  FP
Sbjct: 916  KELEIPSLAQAMRQKR-NVQRAIVYVTGVKVIRTKKLQKMAFVTFCDQNDEMEAVVFP 972


>gi|207091746|ref|ZP_03239533.1| DNA polymerase III subunit alpha [Helicobacter pylori HPKX_438_AG0C1]
          Length = 1211

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1040 (37%), Positives = 597/1040 (57%), Gaps = 75/1040 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  ++      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + P  P F       + E  D + ++ +   +K   GL+ RL    + K  H Q Y++RL
Sbjct: 294  NPPTPPSFKFTKAYAKNEGLDFE-DDASYFAHKVREGLKERLI--LVPKEKHDQ-YQERL 349

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ 
Sbjct: 350  EKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV
Sbjct: 410  LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512
             R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+        
Sbjct: 470  ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527

Query: 513  --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
              E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LI
Sbjct: 528  VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587

Query: 570  KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            KFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SGM
Sbjct: 588  KFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646

Query: 629  RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
             Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T
Sbjct: 647  FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPT 706

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     
Sbjct: 707  YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++
Sbjct: 767  AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856
              + R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E 
Sbjct: 827  IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEE 886

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
             A   + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +   
Sbjct: 887  RAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944

Query: 917  KNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDV 970
            K++ N+      ++F    G   +++ L+   +   ++    E E   LG + SG+PLD 
Sbjct: 945  KDKANEMMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004

Query: 971  YKPILRKMGIKGYEESVATI 990
            +K       IKG++  V +I
Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019


>gi|218135117|ref|ZP_03463921.1| hypothetical protein BACPEC_03022 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990502|gb|EEC56513.1| hypothetical protein BACPEC_03022 [Bacteroides pectinophilus ATCC
           43243]
          Length = 1200

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/1002 (37%), Positives = 573/1002 (57%), Gaps = 61/1002 (6%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +E   +F HL VH+ YSLL+G   +N I+ +       ++AITD   ++  ++F + A  
Sbjct: 1   MEIRMAFTHLHVHTEYSLLDGLSKINEIVSQAKKLGMDSLAITDHGVMYGVIDFYRAALK 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            GI+PIIGC++ +      +   +          +VLL     GY  L+++VS+ ++ + 
Sbjct: 61  EGIKPIIGCEVYV--APGSRFDKEAGAGDDRYYHLVLLAENDTGYHNLMKIVSKGFV-EG 117

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183
                R+    L E   EG+I L+   +G + R    N  +   K  L ++++FG    +
Sbjct: 118 FYYKPRVDYEVLSEY-HEGVIALSACLAGEVQRYLARNMYEEGVKAALRYQEIFGKGNYF 176

Query: 184 VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           + LQ H     R+   Q+++++    + LVATN+  +   +D  AHD+L+ +  S  ++ 
Sbjct: 177 LELQDHGIPEQRFVNQQLMRMSRELGIDLVATNDVHYTFADDASAHDILLCIQTSKKITD 236

Query: 243 KDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            DR +     +YLK+  EM  +F+  P+AL+NT +IA RC+  ++     LP++   +  
Sbjct: 237 TDRMKYEGGQYYLKSEQEMRELFAYAPQALDNTAKIAARCNVEIEFGVQKLPKY---DTP 293

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +       LR     G   R            +D R+RLD+EL+VI  M +  YFLIV 
Sbjct: 294 AVYASSSEYLRWLCNRGFGKRYPDAP-------EDVRKRLDYELSVINEMGYVDYFLIVW 346

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFI +AK N+I VGPGRGS AGSV AY L ITDIDP+++SL+FERFLNP+R+SMPD D+D
Sbjct: 347 DFINYAKSNDISVGPGRGSAAGSVVAYCLEITDIDPIKYSLIFERFLNPERVSMPDIDVD 406

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC +RR EVI YV  KYG +RV QI+TFG++ A+A ++DVGR L +PY+  D + K+IP 
Sbjct: 407 FCFERRQEVIDYVVRKYGKDRVCQIVTFGTMAARAVIKDVGRVLDLPYALRDSVSKMIPR 466

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
           +    +  +AI  +   +    +D +V  L++ S++LEGL RHAS HAAG+VI  + + +
Sbjct: 467 ELGITID-KAIEMNPELKALYNSDETVHDLIDKSRRLEGLPRHASMHAAGVVISQKAVDE 525

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            VP+ R     + V QF M  +E+ GL+K DFLGL+TLT++Q +   + +     D+  I
Sbjct: 526 YVPLSRGSDGSI-VAQFVMTTLEELGLLKMDFLGLRTLTVIQSAEHMVRKVVPDFDIDKI 584

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            ++D   + +L+T  T G+FQLESSGM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y
Sbjct: 585 DYNDAAVFDMLSTGRTEGVFQLESSGMKSFMKELKPHSMEDIIAGISLYRPGPMDFIPQY 644

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              KN +  IV   P ++P+L+ T G I+YQEQVMQI + L+GYS   +D++RRAM KK 
Sbjct: 645 IKGKNDRSSIVYDCPQLEPILEPTYGCIVYQEQVMQIVRDLAGYSWGRSDLVRRAMSKKK 704

Query: 722 KEEMDKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
              M++++  FI         G   NGI + +A +I++ +  FA Y FNKSHAA YAV++
Sbjct: 705 AYVMEQERRNFIYGNPEENVKGCVNNGIDEKVAGHIYDNMIDFAKYAFNKSHAACYAVVA 764

Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
           YQTA++KTHYP +F+AA MT  +DN  K+ ++    RQ  I I+PP VN     F V  N
Sbjct: 765 YQTAFLKTHYPTQFMAALMTSVIDNSTKVAEYVMACRQMGIDILPPDVNEGEYGFSVSGN 824

Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            I Y L+AIK +G      ++ E S +  F +L DF  R+  K+ N+R +E+ + +GA D
Sbjct: 825 AIRYGLSAIKSLGRPVIEALVNERSENGKFKNLRDFIERM-GKEANKRTIENFIKSGAFD 883

Query: 893 CF-GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
           CF G  R Q+L        Y+Q V        +++  +EK + + +++L  F  E +   
Sbjct: 884 CFEGNRRQQMLV-------YSQIV--------DDVARNEKNSLTGQMSLFDFVDEETKAE 928

Query: 952 FE----------------NEQRVLGFYFSGHPLDVYKPILRK 977
           FE                 E+ VLG Y SGHPLD Y  +  K
Sbjct: 929 FEIKMPDVPEYGKKELLAFEKEVLGIYVSGHPLDEYIDMWNK 970


>gi|188528231|ref|YP_001910918.1| DNA polymerase III subunit alpha [Helicobacter pylori Shi470]
 gi|188144471|gb|ACD48888.1| DNA polymerase III subunit alpha [Helicobacter pylori Shi470]
          Length = 1211

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1040 (37%), Positives = 597/1040 (57%), Gaps = 75/1040 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + P  P F       + E  + + ++ +    KA  GL+ RL    + K  H Q Y++RL
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFE-DDASYFAYKAREGLKERLV--LVPKEKHDQ-YKERL 349

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ 
Sbjct: 350  EKEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV
Sbjct: 410  LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512
             R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+        
Sbjct: 470  ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527

Query: 513  --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
              E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LI
Sbjct: 528  VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587

Query: 570  KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            KFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SGM
Sbjct: 588  KFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646

Query: 629  RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
             Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T
Sbjct: 647  FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPT 706

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     
Sbjct: 707  YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++
Sbjct: 767  AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856
              + R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E 
Sbjct: 827  IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGEPEKKIVFGLGAIKGVGGEPIKNIIEE 886

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
             A   + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +   
Sbjct: 887  RAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944

Query: 917  KNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDV 970
            K++ N+      ++F    G   +++ L+   +   ++    E E   LG + SG+PLD 
Sbjct: 945  KDKANEMMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004

Query: 971  YKPILRKMGIKGYEESVATI 990
            +K       IKG++  V +I
Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019


>gi|297380684|gb|ADI35571.1| DNA polymerase III, alpha subunit [Helicobacter pylori v225d]
          Length = 1211

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1039 (37%), Positives = 597/1039 (57%), Gaps = 73/1039 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRF----IEKECDDIQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
            + P  P F       + + +  E++ +    KA  GL+ RL    + K  H Q Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLSFEDDASYFAYKAREGLKERLV--LVPKEKHDQ-YKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL--------- 512
            R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+         
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQV 528

Query: 513  -EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
             E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIK
Sbjct: 529  WEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIK 588

Query: 571  FDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
            FDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SGM 
Sbjct: 589  FDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGMF 647

Query: 630  QAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQ 686
            Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T 
Sbjct: 648  QGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTY 707

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A
Sbjct: 708  GTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKA 767

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
             N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++ 
Sbjct: 768  ANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYI 827

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEAS 857
             + R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E  
Sbjct: 828  DEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEER 887

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
            A   + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +   K
Sbjct: 888  AKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--AK 945

Query: 918  NRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVY 971
            ++ N+      ++F    G   +++ L+   +   ++    E E   LG + SG+PLD +
Sbjct: 946  DKANEMMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEF 1005

Query: 972  KPILRKMGIKGYEESVATI 990
            K       IKG++  V +I
Sbjct: 1006 KE-----EIKGFKNLVKSI 1019


>gi|225571413|ref|ZP_03780409.1| hypothetical protein CLOHYLEM_07511 [Clostridium hylemonae DSM 15053]
 gi|225159889|gb|EEG72508.1| hypothetical protein CLOHYLEM_07511 [Clostridium hylemonae DSM 15053]
          Length = 1159

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/1052 (37%), Positives = 592/1052 (56%), Gaps = 48/1052 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      ++AITD   +F  ++F + A  AG++P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKECISRVKELGMDSVAITDHGVMFGVIDFYRAAKEAGVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC++ +           G +       +VLL     GY  L++LVSR +  +      
Sbjct: 62   VLGCEVYVAPGSRFD-KEAGGSGEDRYYHLVLLAENDMGYHNLMKLVSRGFT-EGYYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+ L  L+E   EG+I L+   +G + R         A+     ++ +FG+   ++ LQ 
Sbjct: 120  RVDLELLEEY-HEGIIALSACLAGEVQRNIMRGMYSEAKAAAQRYEGIFGEGNFFLELQD 178

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++   +Q +++L+    + LVATN+  +  E+D + HD+L+ +     ++ +DR R
Sbjct: 179  HGMQEQKMVNQSLLRLSQETGIELVATNDIHYTYEDDVKPHDILLCLQTGKKLADEDRMR 238

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM  +F    +ALENT +IA RC+  ++     LP++   E       
Sbjct: 239  YEGGQYYIKSEEEMRRLFPYALQALENTQKIADRCNVEIEFGVTKLPKYDVPE----GYT 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     GL+ R   G  A         +RL++EL+VI  M +  YFLIV DFI++
Sbjct: 295  SWEYLRKLCFEGLKRRYPDGEEALA-------ERLEYELSVIQSMGYVDYFLIVWDFIKY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK ++I VGPGRGS AGS+ +Y L IT IDP+++ LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 348  AKDHDIIVGPGRGSAAGSIVSYCLDITSIDPIKYQLLFERFLNPERVSMPDIDIDFCFER 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG+L A+  +RDVGR + +PY+ VD + K++P +    
Sbjct: 408  RQEVIDYVVEKYGSDRVVQIVTFGTLAARGVIRDVGRVMDLPYAFVDNIAKMVPTELNMT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+A +   R     D  V  L+++S++LEGL RH S HAAG+VI  + + + VP+ 
Sbjct: 468  LE-RALAMNPELRRVYQEDEQVRELIDMSKRLEGLPRHTSMHAAGVVISQKAVDEYVPL- 525

Query: 547  RDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604
              + SD  V TQF M  +E+ GL+K DFLGL+TLT++Q +        G  +D+  I +D
Sbjct: 526  -SLGSDGSVTTQFTMTTLEELGLLKMDFLGLRTLTVIQNAAQLAGVSTGQPIDMDNIDYD 584

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +    + T  T GIFQLES GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   
Sbjct: 585  DKKVLSSIGTGRTDGIFQLESGGMKSFMKELKPQSLEDIIAGISLYRPGPMDFIPQYIKG 644

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            KN  + I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK  + 
Sbjct: 645  KNNAQSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKGDV 704

Query: 725  MDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            M K+++ F        + G  KNGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQT
Sbjct: 705  MKKERQNFVYGNEEEGVPGCIKNGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQT 764

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNRI 835
            AW+K +YPVEF+AA MT  +DN  K+ ++    R Q  I+IMPP +N    +F V + RI
Sbjct: 765  AWLKYYYPVEFMAALMTSCIDNPGKVAEYIYTCRQQMGIEIMPPDINKGLGNFTVENGRI 824

Query: 836  YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y LAAIK +G      I+ E  A  PF +L+DF  R+  K++N+R LE+ + +GA D  
Sbjct: 825  RYGLAAIKSIGRPVIDAIVSERGAGGPFKTLKDFIERMSGKEVNKRTLENFIKSGAFDSL 884

Query: 895  GYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSS 949
            G +R Q +    Q LD + +  ++    +    + +   +K  F   +  + ++  EN  
Sbjct: 885  GGTRKQFMIIYVQILDQVNQERKYSMTGQMTLFDMVDEDQKAEFDIPLPDVGEYEKEN-L 943

Query: 950  VRFENEQRVLGFYFSGHPLDVY-----KPILRKMGIKGYEESVATIR---GNNIRLAAMV 1001
            + FE E  VLG Y SGHP++ Y     K I R       +E     +   G    +  ++
Sbjct: 944  LSFEKE--VLGIYLSGHPMEEYEEKWKKSITRTTLDFQLDEETGQTKVHDGAQEVVGGII 1001

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              K  K T+    + ++T  + A   E   FP
Sbjct: 1002 ADKTIKYTKNNKTMAFLTLEDLAGTVEVVVFP 1033


>gi|317181143|dbj|BAJ58929.1| DNA polymerase III subunit alpha [Helicobacter pylori F32]
          Length = 1211

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1040 (37%), Positives = 596/1040 (57%), Gaps = 75/1040 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + P  P F       + E  + + ++ +    KA  GL+ RL    + K  H Q Y++RL
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFE-DDASYFAYKAREGLKERLV--LVPKEKHDQ-YKERL 349

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ 
Sbjct: 350  EKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV
Sbjct: 410  LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512
             R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+        
Sbjct: 470  ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527

Query: 513  --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
              E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LI
Sbjct: 528  VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587

Query: 570  KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            KFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SGM
Sbjct: 588  KFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646

Query: 629  RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
             Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T
Sbjct: 647  FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKST 706

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     
Sbjct: 707  YGTIVYQEQVMQIVQAIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++
Sbjct: 767  AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856
              + R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E 
Sbjct: 827  IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEE 886

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
                 + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +   
Sbjct: 887  RTKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944

Query: 917  KNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDV 970
            K++ N+      ++F    G   +++ L+   +   ++    E E   LG + SG+PLD 
Sbjct: 945  KDKANEMMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004

Query: 971  YKPILRKMGIKGYEESVATI 990
            +K       IKG++  V +I
Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019


>gi|56421279|ref|YP_148597.1| DNA-directed DNA polymerase III subunit alpha [Geobacillus
            kaustophilus HTA426]
 gi|56381121|dbj|BAD77029.1| DNA-directed DNA polymerase III alpha subunit [Geobacillus
            kaustophilus HTA426]
          Length = 1091

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/1032 (38%), Positives = 589/1032 (57%), Gaps = 65/1032 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL V S YSL + A ++  +  +       A+A+TD N L+ A+ F ++    GI+PI
Sbjct: 3    FVHLHVLSGYSLFQSAAAVEALAARAKQLGYQALALTDRNVLYGAIPFYRECKQNGIRPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG   D+ +         G+  FP    +VLL +  EGY+ L+E +S M  + + K    
Sbjct: 63   IGVTADVALS--------GEEAFP----LVLLAANEEGYRHLLE-ISTMMQMGETKHMEE 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              L  L    + G+I +T GS G ++        + A++ L  + +LF  RLYV +QR  
Sbjct: 110  AALVRL----SGGIIAITPGSEGRVESLVAAGEWERAKEALGRYHQLFPGRLYVAVQRGE 165

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--QKDRPRV 248
                  E+ ++QL     +P+VATN+  ++   D  A   L A+    +++  + D  R 
Sbjct: 166  QTRAPYEAGLLQLVEETGVPIVATNDVRYVERSDAVAWRCLQAIGRGALLADIEDDNGR- 224

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                YL    EM   F+DLPEALEN++ IA +C   ++     LP +   + +      +
Sbjct: 225  ----YLAGPEEMARRFADLPEALENSLAIADQCELQIEFGGWRLPAYPVPDGET----AD 276

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            + LR         RL++  +A+   + D  Y +RL  EL+VI  + FS YFLIVAD + +
Sbjct: 277  SYLR---------RLSEQGLARRVPSADERYWRRLSHELDVIQSLHFSDYFLIVADVLAY 327

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I  GPGRGS AGS+ AYAL+ITD+DP+++ LLFERFLNP+R S+PD D+DF  DR
Sbjct: 328  ARRRGILTGPGRGSAAGSLVAYALSITDVDPIKYGLLFERFLNPERASVPDIDLDFPDDR 387

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVIRYV +KYG +RVAQIITFG+  AKAALR+  +AL +P  + +++  L+P+     
Sbjct: 388  REEVIRYVADKYGRDRVAQIITFGTFGAKAALRETAKALGVPGREAEQVAALLPSK--QS 445

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+L Q  A+ + FR A  A P     L ++QKLEGL RH S HAAG++I   PL + VP+
Sbjct: 446  VTLRQWHAESAAFRRAVAAVPQGREWLAVAQKLEGLPRHTSIHAAGVIISPEPLVRFVPL 505

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604
             +    + P+TQ+ M  +E  GL+K DFLGL+TLTL+++ +  +  Q G   D+  +P +
Sbjct: 506  -QPSHGEWPLTQYAMGALEALGLLKIDFLGLRTLTLIEQIVRLIERQTGKPFDIRTLPLN 564

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY LL    T GIFQLESSGM++ L  ++P  +ED++A+ +LYRPGP+  I VY  R
Sbjct: 565  DEKTYALLGAGDTNGIFQLESSGMKRVLAELRPSQLEDVVAVNALYRPGPMQMIPVYIRR 624

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K G+E +   HP ++ +L  T GV+IYQEQ+MQIA  L+G+SL +ADVLRRA+ KK K  
Sbjct: 625  KRGEEPVSYAHPDLETILAPTYGVLIYQEQIMQIAARLAGFSLGQADVLRRAVAKKEKAL 684

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + +Q++ F++G   NG  K +A  ++  + +FADYGFN+SHA +YA++SY  A+MK HYP
Sbjct: 685  LAEQRQAFVAGCVANGYPKAVAEELYRHIVRFADYGFNRSHAVSYALLSYAMAYMKAHYP 744

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            + F A  +T    + EK   +  +A +  I ++ PSVN       V  + I   LA +K 
Sbjct: 745  LCFYAVMLTNASGDREKAAVYYWEAARKGINVLLPSVNKSGFRSSVEGSAIRLGLAMVKQ 804

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG+     + E  A+ PF    DF +R+  K L R  LE+L+  GA D FG  R  LL S
Sbjct: 805  VGSAAKLIVEERKANGPFADFFDFAARLLPKGLGRPALEALISVGAFDEFGADRASLLAS 864

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGF 961
            +D   ++AQWV+           A + G  S K    K++  +S   S R   E   LGF
Sbjct: 865  IDIAIEHAQWVQ-----------ALQAGGLSLK---PKYAAAHSWPLSERRRREAEFLGF 910

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
              + HP  V +P+L+  G       VA ++G +  +   VV  ++ +T++G  + + T  
Sbjct: 911  AVTPHPAAVCRPLLQAAGAV----CVADVQGPSTVVGGAVVRIRKTRTKQGEEMAFFTVG 966

Query: 1022 EPAKEYEANFFP 1033
            + + E EA  FP
Sbjct: 967  DESGELEAVAFP 978


>gi|331268630|ref|YP_004395122.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925]
 gi|329125180|gb|AEB75125.1| DNA polymerase III, alpha subunit [Clostridium botulinum BKT015925]
          Length = 1168

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/1067 (36%), Positives = 605/1067 (56%), Gaps = 67/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  H+ YSLL+G+  +  ++ +       ++AITD   +F  ++F +KA  AGI+P
Sbjct: 7    NFVHLHTHTEYSLLDGSGKIGGLISRAKELGMKSLAITDHGTMFGCVDFYKKAKEAGIKP 66

Query: 70   IIGCQLDIDMQD----NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            IIGC++ +         L   N+          +VLLV   +GY+ L+++VS+   +D  
Sbjct: 67   IIGCEIYVASNSMHIKRLDSENRNH-------HLVLLVKNEQGYKNLMKIVSKA-AIDGF 118

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R+   +L+E  +EGLI L+   +G +       +   A +  L +K +F +  Y+ 
Sbjct: 119  YYKPRVDHEYLKE-HSEGLIALSACLAGEVSYNLLNGTKDKAREVALFYKDIFKEGFYIE 177

Query: 186  LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            LQ H G D+       +V+LA   ++PLVATN+  ++ +ED ++H+VL+ +     +  +
Sbjct: 178  LQYH-GIDKQLRVNEMLVELARELDIPLVATNDVHYIKKEDAKSHEVLLCIQTGKTLDDE 236

Query: 244  DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            DR R  P   YLK+  EM   FS + EALENT +IA  C+F    H   LP F   E  D
Sbjct: 237  DRMRYEPQKFYLKSPEEMYETFSYVSEALENTNKIADECNFDYVFHESKLPNFPLPEGAD 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               E   EL  K   GLEVR  +          + ++RL++EL VI +M +  YFLIV D
Sbjct: 297  -HFEYMKELCYK---GLEVRYLEVT-------DELKERLEYELGVIKQMGYVDYFLIVWD 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            F +++ +  I  GPGRGS AGS+ AY L IT IDP++++L+FERFLNP+R+SMPD D DF
Sbjct: 346  FFRFSHEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  KYG E V+QI+TFG++  +A +RDVGRA+   Y++VDR+ K+IP  
Sbjct: 406  CYERRGEVIDYVVEKYGKENVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTV 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+  +   +E    D  +  L+++++ LEGL RH STHAAG+VI  +PL   
Sbjct: 466  LGITID-KALEMNPELKEVYDKDMRIKELIDVARDLEGLPRHTSTHAAGVVIASQPLVSY 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
            VP+ ++   +  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + +  G K+DL  I
Sbjct: 525  VPLSKN--EEAIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIELIKKNTGTKIDLDKI 582

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             F+D   Y++L    T+G+FQLES+GM   ++ ++P+ +EDIIA +SLYRPGP+  I  Y
Sbjct: 583  NFEDENVYNMLGRGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAEIPKY 642

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               KN  + I  I P ++ +L  T GV++YQEQVMQI + L+GYS+  +D++RRAM KK 
Sbjct: 643  IKNKNNPKNIEYITPKLEGILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKK 702

Query: 722  KEEMDKQKERFISGAS-----------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             + M+++++ FI G             +NGIS+  A  I++ +  FA Y FNKSHAAAYA
Sbjct: 703  HKVMEEERKNFIYGIEEDGKVVVPGCLRNGISEDAANKIYDQMMDFASYAFNKSHAAAYA 762

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            V++Y TA++  +YP EF+AA +     N +K+  + + A+Q +I+ +PP +N     F V
Sbjct: 763  VVAYYTAYLVHYYPTEFMAAMLNSVRGNSDKVAIYIRAAKQMDIETLPPDINKSFGKFTV 822

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             + +I + L+AIK VG      I+++  +K  F+S  DFC+++    +N+R++ESL+ AG
Sbjct: 823  QNGKIRFGLSAIKNVGENIIDVIVKSREEKGEFNSFVDFCNKISMGSINKRMVESLIKAG 882

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948
              DCFG  R QLL   + I        K       ++F      F D +I        N 
Sbjct: 883  VFDCFGIYRSQLLAVYEKIIDSVVNQRKKNIEGQVSLFGSFDNEFKDTEIKYPAIDEFNK 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILR----------------------KMGIKGYEES 986
              +   E+ + G Y +GHPL+ Y+ IL+                      ++ +   E++
Sbjct: 943  KSKLAMEKEMTGLYLTGHPLEDYEEILKNATSAKTTDIIIDESLEENLIDEVSLHVEEQN 1002

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G+ + +  ++ +  +K T+  S + ++T  +     E   FP
Sbjct: 1003 SKIKDGDKVIIGGLITNVTRKITKTNSMMAFITLEDLYSSIEVIIFP 1049


>gi|15612418|ref|NP_224071.1| DNA polymerase III subunit alpha [Helicobacter pylori J99]
 gi|11132624|sp|Q9ZJF9|DPO3A_HELPJ RecName: Full=DNA polymerase III subunit alpha
 gi|4155965|gb|AAD06929.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
          Length = 1211

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/1039 (37%), Positives = 598/1039 (57%), Gaps = 73/1039 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A++    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRF----IEKECDDIQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
            + P  P F       + + +  E++ +   +KA  GL  RL    + +  H Q Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLSFEDDASYFAHKAREGLRERLI--LVPEEKHEQ-YKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL--------- 512
            R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+         
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNEVAKQV 528

Query: 513  -EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
             E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIK
Sbjct: 529  WEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIK 588

Query: 571  FDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
            FDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SGM 
Sbjct: 589  FDFLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGMF 647

Query: 630  QAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQ 686
            Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T 
Sbjct: 648  QGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTY 707

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A
Sbjct: 708  GTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKA 767

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
             N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++ 
Sbjct: 768  ANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYI 827

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEAS 857
             + R   I++MPP +N+   DF V          + +I + L A+KGVG    ++I+E  
Sbjct: 828  DEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEER 887

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
            A   + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +   K
Sbjct: 888  AKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--AK 945

Query: 918  NRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVY 971
            ++ N+      ++F   +G   +++ L+   +   ++    E E   LG + SG+PLD +
Sbjct: 946  DKANEMMQGGNSLFGAMEGGIKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEF 1005

Query: 972  KPILRKMGIKGYEESVATI 990
            K       IKG++  V +I
Sbjct: 1006 KE-----EIKGFKNLVKSI 1019


>gi|217033909|ref|ZP_03439333.1| hypothetical protein HP9810_870g41 [Helicobacter pylori 98-10]
 gi|216943672|gb|EEC23117.1| hypothetical protein HP9810_870g41 [Helicobacter pylori 98-10]
          Length = 1211

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1039 (37%), Positives = 597/1039 (57%), Gaps = 73/1039 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIRMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRF----IEKECDDIQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
            + P  P F       + + +  E++ +    KA  GL+ RL    + K  H Q Y++RL+
Sbjct: 294  NPPTPPSFKFTKTYAQNEGLSFEDDASYFAYKAREGLKERLV--LVPKEKHDQ-YKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL--------- 512
            R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+         
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQV 528

Query: 513  -EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
             E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIK
Sbjct: 529  WEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIK 588

Query: 571  FDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
            FDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SGM 
Sbjct: 589  FDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGMF 647

Query: 630  QAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQ 686
            Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T 
Sbjct: 648  QGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPTY 707

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K++F+ GA   G     A
Sbjct: 708  GTIVYQEQVMQIVQAIGGFSLGEADLIRRAMGKKDAQIMADNKDKFVEGAKNLGHDGQKA 767

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
             N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++ 
Sbjct: 768  ANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYI 827

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEAS 857
             + R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E  
Sbjct: 828  DEVRALEIEVMPPHINSSMQDFSVAEFKNQKGEPEKKIVFGLGAIKGVGGEPIKNIIEER 887

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
                + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +   K
Sbjct: 888  TKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--AK 945

Query: 918  NRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVY 971
            ++ N+      ++F    G   +++ L+   +   ++    E E   LG + SG+PLD +
Sbjct: 946  DKANEMMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEF 1005

Query: 972  KPILRKMGIKGYEESVATI 990
            K       IKG++  V +I
Sbjct: 1006 KE-----EIKGFKNLVKSI 1019


>gi|168185626|ref|ZP_02620261.1| DNA polymerase III subunit alpha [Clostridium botulinum C str.
            Eklund]
 gi|169296453|gb|EDS78586.1| DNA polymerase III subunit alpha [Clostridium botulinum C str.
            Eklund]
          Length = 1167

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/1075 (36%), Positives = 622/1075 (57%), Gaps = 76/1075 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL  H+ YSLL+G+  +  ++++       ++AITD   +F  ++F +KA  AG
Sbjct: 2    KGQKFVHLHTHTEYSLLDGSGKIGGLINRAKELGMDSLAITDHGTMFGCVDFYKKAKEAG 61

Query: 67   IQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            I+PIIG ++ +  +  N+K  +           +VLLV    GY+ L+++VS+   +D  
Sbjct: 62   IKPIIGSEIYVASKSMNIKRNDSENKNH----HLVLLVKNEIGYKNLMKIVSKA-AIDGF 116

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R+   +L+E  +EGLI L+   +G +       + + A +  L +K +F +  Y+ 
Sbjct: 117  YYKPRVDHEYLKE-HSEGLIALSACLAGEVSYNLLNGTKEKAREVALFYKDIFKEGFYLE 175

Query: 186  LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            LQ H G D+       +++L+   ++PLVATN+  ++ +ED ++HDVL+ +     +  +
Sbjct: 176  LQYH-GIDKQLRVNEMLIELSRELDIPLVATNDVHYIKKEDAKSHDVLLCIQTGKTLDDE 234

Query: 244  DRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            DR R  P + YLK+  EM + FS +PEALENTV+IA+ C+F    H   LP F   E  D
Sbjct: 235  DRMRYEPQNFYLKSPEEMYNTFSYVPEALENTVKIAQECNFDYIFHESKLPNFPLPEGKD 294

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               E   EL  K   GLEVR ++          +  +RL++EL VI  M +  YFLIV D
Sbjct: 295  -HFEYMKELCYK---GLEVRYSE-------ITPELEERLEYELGVIKEMGYVDYFLIVWD 343

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            F +++ +  I  GPGRGS AGS+ AY L IT IDP++++L+FERFLNP+R+SMPD D DF
Sbjct: 344  FFRFSHEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDF 403

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  KYG + V+QI+TFG++  +A +RDVGRA+   Y++VDR+ K+IP  
Sbjct: 404  CYERRGEVIDYVVEKYGKDNVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTV 463

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+  +   +EA  +D  V  L+++++ LEGL RH STHAAG+VI  +PL   
Sbjct: 464  LGITID-KALEMNPELKEAYDSDNRVKELIDVARDLEGLPRHTSTHAAGVVIASQPLVNY 522

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
            VP+ ++   +  VTQF M  +E+ GL+K DFLGL+TLT+++ ++D + +  G K+DL  I
Sbjct: 523  VPLSKN--EEAIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIDLIEENTGTKIDLDKI 580

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             F+D   Y +L    T+G+FQLES+GM   ++ ++P+ +EDIIA +SLYRPGP+  I  Y
Sbjct: 581  NFEDENVYGMLGKGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAEIPKY 640

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               KN  + I  + P ++P+L  T GV++YQEQVMQI + L+GYS+  +D++RRAM KK 
Sbjct: 641  IKNKNNPKNIEYLTPELEPILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKK 700

Query: 722  KEEMDKQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             + M+++++ FI G              KNGIS+  A  I++ +  FA Y FNKSHAAAY
Sbjct: 701  HKVMEEERKNFIYGIEDEKGNVIVPGCLKNGISEDAANKIYDQMMDFASYAFNKSHAAAY 760

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            AV++Y TA++  +YP EF+AA +     N +K+  + + A+Q  I+++PP++N     F 
Sbjct: 761  AVVAYYTAYLVYYYPTEFMAAILNSVRGNSDKVAVYIRAAKQMEIEVLPPNINKSFGKFT 820

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V + +I + L+AIK VG     +I +   +K  F+S  DFC+++ S  +N+R++ESLV A
Sbjct: 821  VQNGKICFGLSAIKNVGENVVDNIAKVREEKGEFNSFVDFCNKISSGSINKRMVESLVKA 880

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--------TL 940
            GA DCFG  R Q+L   + I        K   +   ++F    G+F D+          +
Sbjct: 881  GAFDCFGIYRSQILAVYEKIIDSVVNQRKKNIDGQMSLF----GSFDDEFKDTEIKYPAI 936

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR----------------------KM 978
            ++F  +N   +   E+ + G Y +GHPL+ Y+ ILR                      ++
Sbjct: 937  DEFDKKN---KLAMEKEMTGLYLTGHPLEEYEEILRNRTSAKTTDIIVDESLEEELIDEV 993

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +   E++     G+ + +  ++ +  +K TR  S + ++T  +     E   FP
Sbjct: 994  TLHVEEQNSKIKDGDKVIICGLITNVTRKITRTNSMMAFITLEDLYSSIEVIIFP 1048


>gi|73749142|ref|YP_308381.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. CBDB1]
 gi|289433116|ref|YP_003462989.1| DNA polymerase III subunit alpha [Dehalococcoides sp. GT]
 gi|73660858|emb|CAI83465.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. CBDB1]
 gi|288946836|gb|ADC74533.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. GT]
          Length = 1170

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/1022 (38%), Positives = 582/1022 (56%), Gaps = 47/1022 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ +SLL+G   ++ ++ +       A+AITD   +     F ++A  AGI+PI
Sbjct: 2    FCHLHVHTEFSLLDGMCRISQLVVRAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +  +   D    T   K  +     +VLL    +GY  LI+L SR +L +      R
Sbjct: 62   LGSEFYLAYGDRTAKTAADKNYY----HLVLLAKNNKGYHNLIQLSSRSHL-EGFYYKPR 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L++  +EGL+ L+   SG + R    N    A +  L +KK F +  Y+ +QRH 
Sbjct: 117  IDKELLEKY-SEGLVCLSACPSGEVPRLILENRYDEAREAALWYKKTF-ENYYIEIQRHP 174

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D  +  S ++ +A   ++PLVATN++ +L +ED   HD+L+ +  + +VS + R ++ 
Sbjct: 175  MPDLEKINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKME 234

Query: 250  PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE- 307
             ++ YLK+  EM   + D+P+A+ENT +IA  C+  L      LP        DI K + 
Sbjct: 235  GEYFYLKSPQEMAEAYQDIPDAIENTAKIAEMCNVSLDFGRLHLPEI------DIPKGKT 288

Query: 308  -ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L +    GL V              +   RL +EL+VI   +F+ YFL+  D I++
Sbjct: 289  PDEYLADLCYEGLPVFYPDAG-------PEILDRLKYELDVIKTTEFANYFLVTWDIIRF 341

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             K+  +  G  RGS A S+  Y L IT +DP+R+ L+FERFLN +R  MPD D+DF  DR
Sbjct: 342  VKEKGLYYGV-RGSAASSIVLYCLGITALDPIRYKLVFERFLNIERKEMPDIDMDFQDDR 400

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI YV  KYG + V+QIITFG+L AKAA+RDVGRAL M Y+ VDR+ K+IP  P H 
Sbjct: 401  REEVIEYVVGKYGRDHVSQIITFGTLGAKAAVRDVGRALGMAYADVDRVAKVIPFSP-HM 459

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               +A+ + S  +E    D  V  L++ ++K+EGL RHASTHAAG+VI   PL+  VP+ 
Sbjct: 460  TLDKAMEESSELKEMYNQDAVVRNLVDAARKVEGLSRHASTHAAGVVISKDPLTDHVPLQ 519

Query: 547  RDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            R  + +   L +TQ+ M+ I K GL+K DFLGL  L +L K+   + +  G  +D   IP
Sbjct: 520  RLSKENNLGLVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQDIDPLAIP 579

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +T+ LL    T+G+FQLE +GMR+ ++ ++P    DI A+V+LYRPGP++ I  + 
Sbjct: 580  LDDQKTFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIPRFI 639

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K+G E I   HP ++P+L+ET GVI+YQEQV+ IAQ  SGY+L +AD+LR+AMGKKI 
Sbjct: 640  KSKHGLEPITYPHPALEPLLEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKKIA 699

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              M KQK  F+ GA KNG ++ IA  +F L+  FA Y FNK+HA +YA+I+YQTA++K +
Sbjct: 700  AVMQKQKANFVDGAMKNGYTREIADEVFALVEPFAGYAFNKAHATSYALIAYQTAYLKAN 759

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYY 837
            YPVE++ A +    D  EK+     +AR   I+++PP +N    +F++     G  +I +
Sbjct: 760  YPVEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGANFEIEQAEGGVKKIRF 819

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAAIK VG      I+ E  A+  + S+ED C R +   LN+RV+ESLV AGALD  G 
Sbjct: 820  GLAAIKNVGVAAVEPIVAERKANGDYLSVEDLCRRAEGSSLNKRVMESLVKAGALDNMG- 878

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVENSSV---- 950
             R  L  +L NI   AQ  +K + +    +F      FS +  + +    +E S V    
Sbjct: 879  DRGTLFFNLPNILSLAQREQKMKDSNQTTMF----DLFSQQSPVPMTNLELEESPVTTRE 934

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            + + E+ ++G + S HP   Y     ++      +    +    + +A MV S +   TR
Sbjct: 935  KLQWEKELVGIFISEHPFTPYASSALEVTTALCGQIDEELHNQLVTVAGMVASVRVSATR 994

Query: 1011 KG 1012
            +G
Sbjct: 995  EG 996


>gi|308062724|gb|ADO04612.1| DNA polymerase III subunit alpha [Helicobacter pylori Cuz20]
          Length = 1211

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1039 (37%), Positives = 597/1039 (57%), Gaps = 73/1039 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRF----IEKECDDIQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
            + P  P F       + + +  E++ +    KA  GL+ RL    + K  H Q Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLSFEDDASYFAYKAREGLKERLV--LVPKEKHDQ-YKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL--------- 512
            R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+         
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQV 528

Query: 513  -EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
             E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIK
Sbjct: 529  WEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIK 588

Query: 571  FDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
            FDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SGM 
Sbjct: 589  FDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGMF 647

Query: 630  QAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQ 686
            Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T 
Sbjct: 648  QGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTY 707

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G IIYQEQVMQI Q + G+SL E+D++RRAMGKK  + M   K +F+ GA   G     A
Sbjct: 708  GTIIYQEQVMQIVQTIGGFSLGESDLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKA 767

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
             N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++ 
Sbjct: 768  ANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYI 827

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEAS 857
             + R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E  
Sbjct: 828  DEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEER 887

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
            A   + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +   K
Sbjct: 888  AKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--AK 945

Query: 918  NRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVY 971
            ++ N+      ++F    G   +++ L+   +   ++    E E   LG + SG+PLD +
Sbjct: 946  DKANEMMQGGNSLFGAMDGGTKEQVILDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEF 1005

Query: 972  KPILRKMGIKGYEESVATI 990
            K       IKG++  V +I
Sbjct: 1006 KE-----EIKGFKNLVKSI 1019


>gi|218962013|ref|YP_001741788.1| DNA polymerase III, alpha subunit [Candidatus Cloacamonas
            acidaminovorans]
 gi|167730670|emb|CAO81582.1| DNA polymerase III, alpha subunit [Candidatus Cloacamonas
            acidaminovorans]
          Length = 1146

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/1037 (37%), Positives = 591/1037 (56%), Gaps = 39/1037 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  ++ ++        PA+AITD  NLF A++F + A  AGI+P
Sbjct: 2    SFVHLHNHTQYSMLDGACRVDRMIKLAKEYAMPAVAITDHGNLFGAIDFYKTAKNAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128
            I+G +  I   D    T + +  +     ++LL    +GY+ L++L S  Y+  +G    
Sbjct: 62   ILGIEAYIINGDLESETGKNEIRY----HLILLAQNEQGYKNLMKLSSYSYI--KGFYYK 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI  + L++  +EGLI L+    G I    + +  Q AE+  L +K LF +  Y+ +Q 
Sbjct: 116  PRISKTLLKQY-SEGLICLSACVKGEIPALIYNDRMQQAEEVALWYKDLFQEHFYIEIQD 174

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    ++    +++ LA   E+P+V TN+  +L++ DYEAHD+L+ +    ++   DR  
Sbjct: 175  HNLEPEKKIMPRLIDLAKKLEIPMVLTNDCHYLNKNDYEAHDILLCIQTGKLLHDPDRLH 234

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T   Y K+  EM  +F D+PEA  NT++IA      L     +LP            E
Sbjct: 235  YGTNQLYFKSPEEMKELFPDVPEAYNNTLKIADMVDLELHYDKFLLPNI----------E 284

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E +     G  +R      AK  +    +  +QR+++EL VI RM F+GYFLIV D 
Sbjct: 285  TPPEFK---TMGEYLRFLCYENAKIKYPDLNETIKQRIEYELEVIDRMGFNGYFLIVKDI 341

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I  A+K ++PVGPGRGSGAGS+ AY L IT IDPL++ L+FERFLNPDR+SMPD DIDFC
Sbjct: 342  IDNARKQSVPVGPGRGSGAGSIVAYLLDITQIDPLQYGLVFERFLNPDRISMPDIDIDFC 401

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
               R +VI Y+  +YG E V QIITF +L AK+ ++DV R L +P S+ + + K I  + 
Sbjct: 402  AQNRSKVIDYIIQRYGRESVTQIITFSTLGAKSVIKDVARVLSVPASEANAITKTIQGNK 461

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                  +A      F     ++     + + S+ LEGL R  S H AG+VI    L+  V
Sbjct: 462  TLD---EAYNQYPEFSSLINSNDLYRTIFKHSKVLEGLVRQTSVHPAGVVIAPGDLTDYV 518

Query: 544  PMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
            P+    +     + + QF  KW+    L+K D LGLK LTL+QK++D + Q + + +D++
Sbjct: 519  PLACSTQKGEEKVILVQFEGKWLNDLKLLKMDILGLKNLTLIQKTIDLVKQAQDIDIDIN 578

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I  +D + Y++L    T G+FQ ES GMR+ L  ++P+ IED+IA+V+LYRPGP+  I 
Sbjct: 579  HISLEDKKVYNILGKGETDGVFQFESDGMRKYLIELKPNKIEDLIAMVALYRPGPMQFID 638

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  RK+G+EK+V  HPL++  LKET GV IYQEQVMQIA+ + G++  EAD LR+AMGK
Sbjct: 639  SYIARKHGREKVVYDHPLMENALKETYGVTIYQEQVMQIAREMGGFTGGEADSLRKAMGK 698

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  + M + +E+F  GA    +   +   I++   +FA+Y FNKSHA  YA+++YQTA++
Sbjct: 699  KNSDLMQQYQEKFRQGAKAQNVPDAVIEKIWQDWLRFAEYAFNKSHATCYALVAYQTAYL 758

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K +YPVEF+AA ++LE D+  KI    +  ++  I+I+PP++N    +F+V    + + L
Sbjct: 759  KAYYPVEFMAALLSLE-DDPTKIPGKIEVCKKMGIKIIPPNINRSDSEFRVHGKEVLFGL 817

Query: 840  AAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIK +G    R I+E  + + P+ S+ +FC+R+DS  +N+ +LESL+ +GA+D    +R
Sbjct: 818  RAIKNLGDAAMRDIIEDRNQNGPYTSIFEFCNRLDSTSVNKTILESLIASGAMDELEGTR 877

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF-SVENSS--VRFENE 955
             Q    ++   +++   +K+R      IF        D        SVE  S   + E E
Sbjct: 878  AQKWNVIELALQFSSNDQKDRKRGQSTIFDFMDTEDEDNNYYPPLPSVEPWSYIYQLEKE 937

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            + VLGFY SGHPL  Y+ +++ +       +  T     + +A ++ +  +KK  KG+ I
Sbjct: 938  KEVLGFYLSGHPLFEYRSLIKHL-TNANSSTGKTKNNGELLIAGIINNISKKKDNKGNPI 996

Query: 1016 GWVTFSEPAKEYEANFF 1032
             +V F +   ++E   F
Sbjct: 997  AFVEFEDLCGKFEVPLF 1013


>gi|169824700|ref|YP_001692311.1| DNA polymerase III subunit alpha [Finegoldia magna ATCC 29328]
 gi|167831505|dbj|BAG08421.1| DNA polymerase III alpha subunit [Finegoldia magna ATCC 29328]
          Length = 1161

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/1059 (35%), Positives = 597/1059 (56%), Gaps = 62/1059 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G   +  +LDK    Q  AIAITD  ++F  ++F ++     I+P
Sbjct: 4    TFTHLHVHTEYSLLDGFSPIEKLLDKAKDLQMKAIAITDHGSMFGTVKFYKECKKRNIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++    +D+ K+ N     +     +VLL    +GY  L+++VS  Y+ +      
Sbjct: 64   IIGCEIYTTNKDH-KIKNPENKFYN---HLVLLAKNQQGYSNLMKIVSLGYV-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+  + L++  +EG+I L+    G +  +        A+      K ++G+  Y+ LQ H
Sbjct: 119  RVDKNTLRKY-SEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNH 177

Query: 190  RGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                  RE  VV     ++A   ++ LV TN+  ++ +EDY+ H++L+ +     + + +
Sbjct: 178  SS----REDMVVMENIPKIAKELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEDN 233

Query: 245  RPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            +    P + +L++  +M  +F + PEA+ENT +IA  C+  L+     LP F   +    
Sbjct: 234  KMSYIPGEFFLRSEEQMKDLFKEYPEAIENTKKIAEMCNVELEFGHLHLPYFAIPDG--- 290

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                 + L+     GLE R A          Q+ ++R ++EL+VI +M +  YFLIV DF
Sbjct: 291  -FTNSSYLKKLVFDGLEKRFANDE-----RLQEAKERCEYELSVIEKMGYVDYFLIVWDF 344

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++AK  +IPVGPGRGS AGS+ +Y L ITDI+PL + L+FERFLNP+R+SMPD DIDFC
Sbjct: 345  IRFAKSQDIPVGPGRGSAAGSIISYCLEITDINPLDYDLIFERFLNPERVSMPDIDIDFC 404

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EVI YV NKYG ++VAQI+TFG++ A+ A+RDVGR L M +  VD   K +PN  
Sbjct: 405  YERREEVIDYVVNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLL 464

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +++     FR+A   +  V +L+++++++EG+ RH STHAAG+VI   P+ + V
Sbjct: 465  NINID-KSLEISPEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYV 523

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+   +  D  +TQFNM  +E+ GL+K DFLGL+TLT++   + ++ + + + V+   + 
Sbjct: 524  PLA--INKDAVITQFNMTELEELGLLKMDFLGLRTLTVISDCIKYIKKNKNIDVNFEDMN 581

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D +   + T   TLGIFQ ES GMR  L+ ++P   +D+IA  +L+RPGP++ I  Y 
Sbjct: 582  ENDPKVLSMFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPMNEIPTYI 641

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            + K+ +E +  + PL++ +LK T G I+YQEQVMQI Q ++G+SL EAD LRRAM KK  
Sbjct: 642  HNKHNEEDVEYLSPLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKKM 701

Query: 723  EEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + M+  ++ F            I GA + G+ + +A  I++L+  FA Y FNKSH+AAY+
Sbjct: 702  KVMEDGRKEFIFGKEDENGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAYS 761

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +++ +TAW+K +YPVEFLAA ++  M N  +I  + ++AR+  I+I PP +N     F V
Sbjct: 762  LVAMRTAWLKYYYPVEFLAALISSVMGNTSQISLYIEEARRLEIEISPPDINYSLDKFDV 821

Query: 831  GDNRIYYSLAAIKGVGTT-TARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLV 886
             DN I Y L AIK VGT    + I+  + +  F S  DF  R+   D   +N+R +ESL+
Sbjct: 822  KDNSIIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESLI 881

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEK 942
             AGA    G +R  L+    +I    Q   KN      N+F    ++E+    D    E+
Sbjct: 882  KAGAFSSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNEENDRDDFTRREE 941

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK--------MGIKGYEESVATIRGNN 994
            F   + S     E+ VLG Y S HPL  Y  I+ +        +    Y E      G  
Sbjct: 942  F---DKSELLRMEKEVLGIYLSDHPLRAYSSIIGQYSNFSTGDLEDDAYNEK--NFDGKR 996

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +++  ++ S  +K T+    + +V F +     E   FP
Sbjct: 997  VKVVGIIESINKKFTKNQKIMEFVKFEDLYGTMELIVFP 1035


>gi|315585849|gb|ADU40230.1| DNA-directed DNA polymerase III alpha subunit [Helicobacter pylori
            35A]
          Length = 1211

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1040 (37%), Positives = 596/1040 (57%), Gaps = 75/1040 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIRMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + P  P F       + E  + + ++ +    KA  GL+ RL    + K  H Q Y++RL
Sbjct: 294  NPPTPPSFKFTKSYAQNEGLNFE-DDASYFAYKAREGLKERLV--LVPKEKHDQ-YKERL 349

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ 
Sbjct: 350  EKEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV
Sbjct: 410  LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512
             R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+        
Sbjct: 470  ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527

Query: 513  --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
              E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LI
Sbjct: 528  VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587

Query: 570  KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            KFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SGM
Sbjct: 588  KFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646

Query: 629  RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
             Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T
Sbjct: 647  FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPT 706

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     
Sbjct: 707  YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDTQIMADNKAKFVEGAKNLGHDGQK 766

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E +  +
Sbjct: 767  AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVACY 826

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856
              + R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E 
Sbjct: 827  IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEE 886

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
             A   + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +   
Sbjct: 887  RAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944

Query: 917  KNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDV 970
            K++ N+      ++F    G   +++ L+   +   ++    E E   LG + SG+PLD 
Sbjct: 945  KDKANEMMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004

Query: 971  YKPILRKMGIKGYEESVATI 990
            +K       IKG++  V +I
Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019


>gi|317179636|dbj|BAJ57424.1| DNA polymerase III subunit alpha [Helicobacter pylori F30]
          Length = 1211

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1040 (37%), Positives = 596/1040 (57%), Gaps = 75/1040 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + P  P F       + E  + + ++ +    KA  GL+ RL    + K  H Q Y++RL
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFE-DDASYFAYKAREGLKERLV--LVPKEKHDQ-YKERL 349

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ 
Sbjct: 350  EKEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV
Sbjct: 410  LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512
             R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+        
Sbjct: 470  ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527

Query: 513  --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
              E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LI
Sbjct: 528  VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587

Query: 570  KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            KFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SGM
Sbjct: 588  KFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646

Query: 629  RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
             Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T
Sbjct: 647  FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPT 706

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     
Sbjct: 707  YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++
Sbjct: 767  AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856
              + R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E 
Sbjct: 827  IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEE 886

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
                 + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +   
Sbjct: 887  RTKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944

Query: 917  KNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDV 970
            K++ N+      ++F    G   +++ L+   +   ++    E E   LG + SG+PLD 
Sbjct: 945  KDKANEMMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004

Query: 971  YKPILRKMGIKGYEESVATI 990
            +K       IKG++  V +I
Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019


>gi|229019828|ref|ZP_04176629.1| DNA polymerase III subunit alpha [Bacillus cereus AH1273]
 gi|229026053|ref|ZP_04182436.1| DNA polymerase III subunit alpha [Bacillus cereus AH1272]
 gi|228735269|gb|EEL85881.1| DNA polymerase III subunit alpha [Bacillus cereus AH1272]
 gi|228741435|gb|EEL91634.1| DNA polymerase III subunit alpha [Bacillus cereus AH1273]
          Length = 1095

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/1022 (36%), Positives = 600/1022 (58%), Gaps = 61/1022 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L+ A  ++ ++ +       ++AITD N ++  + F +     GIQPIIG    I    
Sbjct: 1    MLKSACKIDELVIRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPIIGLTASI---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                + + +  +P    +VLL     GYQ L+++ S   ++ + K+   I   WL     
Sbjct: 57   ---FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--IPKKWLAHYA- 104

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQV 200
            +GLI ++ G  G I++    +    AE+   T++ +F +  Y++LQ H   D    + ++
Sbjct: 105  KGLIAISPGKDGEIEQLLLEDKESQAEEVAHTYQNMFSN-FYISLQHHAIQDELLLQEKL 163

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSE 259
             +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  D +YLK+  E
Sbjct: 164  PEFINKVNVPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRMKTDQYYLKSSDE 223

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE--LRNKAVA 317
            M ++FS   EA++NT++IA RC   +  H   LP+F       +   E N+  LR     
Sbjct: 224  MEALFSHAEEAIQNTIKIAERCRVEIPFHVNQLPKF------PVPSNETNDTYLRRVCEE 277

Query: 318  GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
            GL  R        G   + + QRL+ EL+VI+ M FS YFLIV DF+++A +N+I  GPG
Sbjct: 278  GLRKRY-------GTPKEVHIQRLNHELDVISSMGFSDYFLIVWDFMKYAHENHILTGPG 330

Query: 378  RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
            RGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+IRYV++K
Sbjct: 331  RGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEMIRYVKDK 390

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            YG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     ++L+   ++S+
Sbjct: 391  YGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--ITLKDAYEESQ 448

Query: 498  -FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
              RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V + ++  +D+ VT
Sbjct: 449  SLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI-QEGHNDVYVT 507

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTK 615
            Q+    +E+ GL+K DFLGL+ LTLL+  + F+ ++ G  +D+  +P  D +T+ LL   
Sbjct: 508  QYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKHIDIRNLPLQDEKTFQLLGRG 567

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
             T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK +I  +H
Sbjct: 568  DTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKRRIEYLH 627

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            P + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D++++ F+ G
Sbjct: 628  PDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQERKHFVQG 687

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              KNG  +T +  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ A ++  
Sbjct: 688  CLKNGYDETASEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMTALLSSA 747

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
            + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T   ++E
Sbjct: 748  IGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQMEGNAIRYSLLSIRNIGMATVTALLE 807

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
                K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    +YA   
Sbjct: 808  EREGKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGALEYAN-- 865

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGFYFSGHPLDVY 971
                        A + G   D +   K+ V+   + F      E+  LGFY S +P   Y
Sbjct: 866  -----------LARDLG---DAVPKSKY-VQGEELPFIEQLNKEKEALGFYLSSYPTAQY 910

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
              + +++ I    +++   +    R    + S +  +T+K  ++ ++TF +   E EA  
Sbjct: 911  AKLGKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITFCDQNDEMEAVV 969

Query: 1032 FP 1033
            FP
Sbjct: 970  FP 971


>gi|303235030|ref|ZP_07321654.1| DNA polymerase III, alpha subunit [Finegoldia magna BVS033A4]
 gi|302493885|gb|EFL53667.1| DNA polymerase III, alpha subunit [Finegoldia magna BVS033A4]
          Length = 1161

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/1056 (35%), Positives = 595/1056 (56%), Gaps = 56/1056 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G   +  +LDK+   +  AIAITD  ++F  ++F ++     I+P
Sbjct: 4    TFTHLHVHTEYSLLDGFSPIEKLLDKVEELKMKAIAITDHGSMFGTVKFYKECKKRNIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++    +D+ K+ N     +     +VLL    +GY  L+++VS  Y+ +      
Sbjct: 64   IIGCEIYTTNKDH-KIKNPENKFYN---HLVLLAKNQKGYSNLMKIVSLGYV-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+  + L++  +EG+I L+    G +  +        A+      K ++G+  Y+ LQ H
Sbjct: 119  RVDKNTLRKY-SEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNH 177

Query: 190  RGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                  RE  VV     Q+A   ++ LV TN+  ++ +EDY+ H++L+ +     + + +
Sbjct: 178  SS----REDMVVMENIPQIAKELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEDN 233

Query: 245  RPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            +    P + +L++  +M  +F + PEA+ENT +IA  C+  L+     LP F   E    
Sbjct: 234  KMSYIPGEFFLRSEEQMKDLFKEYPEAIENTKKIAEMCNVELEFGHLHLPYFAIPEG--- 290

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                 + L+     GLE R A          Q+ ++R ++EL+VI +M +  YFLIV DF
Sbjct: 291  -FTNSSYLKKLVFDGLEKRFANDE-----RLQEAKERCEYELSVIEKMGYVDYFLIVWDF 344

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++AK  +IPVGPGRGS AGS+ +Y L ITDI+PL + L+FERFLNP+R+SMPD DIDFC
Sbjct: 345  IRFAKSQDIPVGPGRGSAAGSIISYCLEITDINPLDYDLIFERFLNPERVSMPDIDIDFC 404

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EVI YV NKYG ++VAQI+TFG++ A+ A+RDVGR L M +  VD   K +PN  
Sbjct: 405  YERREEVIDYVVNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLL 464

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +++     FR+A   +  V +L+++++++EG+ RH STHAAG+VI   P+ + V
Sbjct: 465  NINID-KSLEISPEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYV 523

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+   +  D  +TQFNM  +E+ GL+K DFLGL+TLT++   + ++ + + + V+   + 
Sbjct: 524  PLA--INKDAVITQFNMTELEELGLLKMDFLGLRTLTVISDCIKYIKKNKNIDVNFEDMN 581

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D +   + T   TLGIFQ ES GMR  L+ ++P   +D+IA  +L+RPGP++ I  Y 
Sbjct: 582  ENDPKVLSMFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPMNEIPTYI 641

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            + K+ +E +  + PL++ +LK T G I+YQEQVMQI Q ++G+SL EAD LRRAM KK  
Sbjct: 642  HNKHNEEDVEYLSPLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKKM 701

Query: 723  EEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + M+  ++ F            I GA + G+ + +A  I++L+  FA Y FNKSH+AAY+
Sbjct: 702  KVMEDGRKEFIFGKEDENGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAYS 761

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +++ +TAW+K +YPVEFLAA ++  M N  +I  + ++AR+ +I+I  P +N     F V
Sbjct: 762  LVAMRTAWLKYYYPVEFLAALISSVMGNTSQISLYIEEARRLDIKIEEPDINYSLDKFDV 821

Query: 831  GDNRIYYSLAAIKGVGTT-TARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLV 886
             DN I Y L AIK VGT    + I+  + +  F S  DF  R+   D   +N+R +ESL+
Sbjct: 822  KDNSIIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESLI 881

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSV 945
             AGA    G +R  L+    +I    Q   KN      N+F   E    +D+    +   
Sbjct: 882  KAGAFSSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNDENDRDDFTRREE 941

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRK--------MGIKGYEESVATIRGNNIRL 997
             + S     E+ VLG Y S HPL  Y  I+ +        +    Y E      G  +++
Sbjct: 942  FDKSELLRMEKEVLGIYLSDHPLRAYSSIIDQYSNFSTGDLEDDAYNEK--NFDGKRVKV 999

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              ++ S  +K T+    + +V F +     E   FP
Sbjct: 1000 VGIIESINKKFTKNQKIMEFVKFEDLYGTMELIVFP 1035


>gi|147669904|ref|YP_001214722.1| DNA polymerase III catalytic subunit, DnaE type [Dehalococcoides sp.
            BAV1]
 gi|146270852|gb|ABQ17844.1| DNA polymerase III catalytic subunit, DnaE type [Dehalococcoides sp.
            BAV1]
          Length = 1170

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/1022 (37%), Positives = 582/1022 (56%), Gaps = 47/1022 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ +SLL+G   ++ ++ +       A+AITD   +     F ++A  AGI+PI
Sbjct: 2    FCHLHVHTEFSLLDGMCRISQLVVRAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +  +   D    T   K  +     +VLL    +GY  LI+L SR +L +      R
Sbjct: 62   LGSEFYLAYGDRTAKTAADKNYY----HLVLLAKNNKGYHNLIQLSSRSHL-EGFYYKPR 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L++  +EGL+ L+   SG + R    N    A +  L +KK F +  Y+ +QRH 
Sbjct: 117  IDKELLEKY-SEGLVCLSACPSGEVPRLILENRYDEAREAALWYKKTF-ENYYIEIQRHP 174

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D  +  S ++ +A   ++PLVATN++ +L +ED   HD+L+ +  + +VS + R ++ 
Sbjct: 175  MPDLEKINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKME 234

Query: 250  PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE- 307
             ++ YLK+  EM   + D+P+A+ENT +IA  C+  L      LP        DI K + 
Sbjct: 235  GEYFYLKSPQEMAEAYQDIPDAIENTAKIAEMCNVSLDFGRLHLPEI------DIPKGKT 288

Query: 308  -ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L +    GL V              +   RL +EL+VI   +F+ YFL+  D I++
Sbjct: 289  PDEYLADLCYEGLPVFYPDAG-------PEILDRLKYELDVIKTTEFANYFLVTWDIIRF 341

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             K+  +  G  RGS A S+  Y L IT +DP+++ L+FERFLN +R  MPD D+DF  DR
Sbjct: 342  VKEKGLYYGV-RGSAASSIVLYCLGITALDPIKYKLVFERFLNIERKEMPDIDMDFQDDR 400

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI YV  KYG + V+QIITFG+L AKAA+RDVGRAL M Y+ VDR+ K+IP  P H 
Sbjct: 401  REEVIEYVVGKYGRDHVSQIITFGTLGAKAAVRDVGRALGMAYADVDRVAKVIPFSP-HM 459

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               +A+ + S  +E    D  V  L++ ++K+EGL RHASTHAAG+VI   PL+  VP+ 
Sbjct: 460  TLDKAMEESSELKEMYNQDAVVRNLVDAARKVEGLSRHASTHAAGVVISKDPLTDHVPLQ 519

Query: 547  RDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            R  + +   L +TQ+ M+ I K GL+K DFLGL  L +L K+   + +  G  +D   IP
Sbjct: 520  RLSKENNLGLVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQDIDPLAIP 579

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +T+ LL    T+G+FQLE +GMR+ ++ ++P    DI A+V+LYRPGP++ I  + 
Sbjct: 580  LDDQKTFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIPRFI 639

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K+G E I   HP ++P+L+ET GVI+YQEQV+ IAQ  SGY+L +AD+LR+AMGKKI 
Sbjct: 640  KSKHGLEPITYPHPALEPLLEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKKIA 699

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              M KQK  F+ GA KNG ++ IA  +F L+  FA Y FNK+HA +YA+I+YQTA++K +
Sbjct: 700  AVMQKQKANFVDGAMKNGYTREIADEVFALVEPFAGYAFNKAHATSYALIAYQTAYLKAN 759

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYY 837
            YPVE++ A +    D  EK+     +AR   I+++PP +N    +F++     G  +I +
Sbjct: 760  YPVEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGANFEIEQAEGGVKKIRF 819

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAAIK VG      I+ E  A+  + S+ED C R +   LN+RV+ESLV AGALD  G 
Sbjct: 820  GLAAIKNVGVAAVEPIVAERKANGDYLSVEDLCRRAEGSSLNKRVMESLVKAGALDNMG- 878

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVENSSV---- 950
             R  L  +L NI   AQ  +K + +    +F      FS +  + +    +E S V    
Sbjct: 879  DRGTLFFNLPNILSLAQREQKMKDSNQTTMF----DLFSQQSPVPMTNLELEESPVTTRE 934

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            + + E+ ++G + S HP   Y     ++      +    +    + +A MV S +   TR
Sbjct: 935  KLQWEKELVGIFISEHPFTPYASSALEVTTALCGQIDEELHNQLVTVAGMVASVRVSATR 994

Query: 1011 KG 1012
            +G
Sbjct: 995  EG 996


>gi|317178164|dbj|BAJ55953.1| DNA polymerase III subunit alpha [Helicobacter pylori F16]
          Length = 1211

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1039 (37%), Positives = 596/1039 (57%), Gaps = 73/1039 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRF----IEKECDDIQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
            + P  P F       + + +  E++ +    KA  GL+ RL    + K  H Q Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLSFEDDASYFAYKAREGLKERLV--LVPKEKHDQ-YKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIGVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL--------- 512
            R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+         
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQV 528

Query: 513  -EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
             E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIK
Sbjct: 529  WEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIK 588

Query: 571  FDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
            FDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SGM 
Sbjct: 589  FDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGMF 647

Query: 630  QAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQ 686
            Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T 
Sbjct: 648  QGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTY 707

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A
Sbjct: 708  GTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKA 767

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
             N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++ 
Sbjct: 768  ANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYI 827

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEAS 857
             + R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E  
Sbjct: 828  DEVRALEIEVMPPHINSSMQDFSVAEFKNQKGEPEKKIVFGLGAIKGVGGEPIKNIIEER 887

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
                + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +   K
Sbjct: 888  TKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--AK 945

Query: 918  NRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVY 971
            ++ N+      ++F    G   +++ L+   +   ++    E E   LG + SG+PLD +
Sbjct: 946  DKANEMMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEF 1005

Query: 972  KPILRKMGIKGYEESVATI 990
            K       IKG++  V +I
Sbjct: 1006 KE-----EIKGFKNLVKSI 1019


>gi|261418242|ref|YP_003251924.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC61]
 gi|319767798|ref|YP_004133299.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC52]
 gi|261374699|gb|ACX77442.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC61]
 gi|317112664|gb|ADU95156.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC52]
          Length = 1092

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/1032 (38%), Positives = 587/1032 (56%), Gaps = 65/1032 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL V S YSL + A ++  +  +       A+A+TD N L+ A+ F ++    GI+PI
Sbjct: 2    FVHLHVLSGYSLFQSAAAVEALAARAKQLGYQALALTDRNVLYGAIPFYRECKQNGIRPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG   D+ +         G+  FP    +VLL +  EGY+ L+E +S M  + + K    
Sbjct: 62   IGVTADVALS--------GEEAFP----LVLLAANEEGYRHLLE-ISTMMQMGETKHMEE 108

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              L  L    + G+I +T GS G ++        + A++ L  + +LF  RLYV +QR  
Sbjct: 109  AALVRL----SGGIIAITPGSEGRVESLVAAGEWERAKEALGRYHQLFPGRLYVAVQRGE 164

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--QKDRPRV 248
                  E+ ++QLA    +P+VATN+  ++   D  A   L A+    +++  + D  R 
Sbjct: 165  QTRAPYEAGLLQLAEETGVPIVATNDVRYVERSDAVAWRCLQAIGRGALLADIEDDNGR- 223

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                YL    EM   F+DLPEALEN++ IA +C   ++     LP +   + +      +
Sbjct: 224  ----YLAGPEEMARRFADLPEALENSLAIADQCELQIEFGGWRLPAYPVPDGET----AD 275

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            + LR         RL++  +A+   + D  Y +RL  EL+VI  + FS YFLIVAD + +
Sbjct: 276  SYLR---------RLSEQGLARRVPSADERYWRRLSHELDVIQSLHFSDYFLIVADVLAY 326

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I  GPGRGS AGS+ AYAL+ITD+DP+++ LLFERFLNP+R S+PD D+DF   R
Sbjct: 327  ARRRGILTGPGRGSAAGSLVAYALSITDVDPIKYGLLFERFLNPERASVPDIDLDFPDGR 386

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVIRYV +KYG +RVAQIITFG+  AKAALR+  +AL +P  + +++  L+P+     
Sbjct: 387  REEVIRYVADKYGRDRVAQIITFGTFGAKAALRETAKALGVPGREAEQVAALLPSK--QS 444

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+L Q  A+ + FR A  A P     L ++QKLEGL RH S HAAG++I   PL + VP+
Sbjct: 445  VTLRQWHAESAAFRRAVAAVPQGREWLAVAQKLEGLPRHTSIHAAGVIISPEPLVRFVPL 504

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604
             +    + P+TQ+ M  +E  GL+K DFLGL+TLTL+++ +  +  Q G   D+  +P +
Sbjct: 505  -QPSHGEWPLTQYAMGALEALGLLKIDFLGLRTLTLIEQIVRLIERQTGKPFDIRTLPLN 563

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY LL    T GIFQLESSGM++ L  ++P  +ED++A+ +LYRPGP+  I VY  R
Sbjct: 564  DEKTYALLGAGDTNGIFQLESSGMKRVLAELRPSQLEDVVAVNALYRPGPMQMIPVYIRR 623

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K G+E +   HP ++ +L  T GV+IYQEQ+MQIA  L+G+SL +ADVLRRA+ KK K  
Sbjct: 624  KRGEEPVSYAHPDLETILAPTYGVLIYQEQIMQIAARLAGFSLGQADVLRRAVAKKEKAL 683

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + KQ + F++G   NG  K +A  ++  + +FADYGFN+SHA +YA++SY  A+MK HYP
Sbjct: 684  LAKQHQAFVAGCVANGYPKAVAEELYRHIVRFADYGFNRSHAVSYALLSYAMAYMKAHYP 743

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            + F A  +T    + EK   +  +A +  I ++ PSVN       V  + I   LA +K 
Sbjct: 744  LCFYAVMLTNASGDREKAAVYYWEAARKGINVLLPSVNKSGFRSFVEGSAIRLGLAMVKQ 803

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG+     + E  A+ PF    DF  R+  K L R  LE+L+  GA D FG  R  LL S
Sbjct: 804  VGSAAKLIVEERKANGPFADFFDFAVRLLPKGLGRPALEALISVGAFDEFGADRASLLAS 863

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGF 961
            +D   ++AQWV+           A E G  S K    K++  +S   S R   E   LGF
Sbjct: 864  IDIAIEHAQWVQ-----------ALEAGGLSLK---PKYAAAHSWPLSERRRREAEFLGF 909

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
              + HP  V +P+L+  G       VA ++G +  +   VV  ++ +T++G  + + T  
Sbjct: 910  AVTPHPAAVCRPLLQAAGAV----CVADVQGPSTVVGGAVVRIRKTRTKQGEEMAFFTVG 965

Query: 1022 EPAKEYEANFFP 1033
            + + E EA  FP
Sbjct: 966  DESGELEAVAFP 977


>gi|317013227|gb|ADU83835.1| DNA polymerase III subunit alpha [Helicobacter pylori Lithuania75]
          Length = 1211

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/1040 (37%), Positives = 597/1040 (57%), Gaps = 75/1040 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A++    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K   + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGHLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + P  P F       + E  D + ++ +   +KA  GL+ RL    + K  H Q Y++RL
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLDFE-DDASYFAHKAREGLKERLI--LVPKEKHDQ-YQERL 349

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ 
Sbjct: 350  EKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK+ +RDV
Sbjct: 410  LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKSVIRDV 469

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512
             R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+        
Sbjct: 470  ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527

Query: 513  --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
              E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LI
Sbjct: 528  VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587

Query: 570  KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            KFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SGM
Sbjct: 588  KFDFLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646

Query: 629  RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
             Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T
Sbjct: 647  FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPT 706

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     
Sbjct: 707  YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++
Sbjct: 767  AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856
              + R   I++MPP +N+   DF V          + +I + L A+KGVG    ++I+E 
Sbjct: 827  IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEE 886

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
             A   + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +   
Sbjct: 887  RAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944

Query: 917  KNRTNKH----ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            K++ N+      ++F    G   ++I L+       ++    E E   LG + SG+PLD 
Sbjct: 945  KDKANEMMQGGNSLFGAMDGGTKEQIILDMTDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004

Query: 971  YKPILRKMGIKGYEESVATI 990
            ++       IKG++  V +I
Sbjct: 1005 FEE-----EIKGFKNLVKSI 1019


>gi|269795562|ref|YP_003315017.1| DNA polymerase III subunit alpha [Sanguibacter keddieii DSM 10542]
 gi|269097747|gb|ACZ22183.1| DNA polymerase III, alpha subunit [Sanguibacter keddieii DSM 10542]
          Length = 1181

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/1082 (36%), Positives = 599/1082 (55%), Gaps = 85/1082 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            +S  FVHL VH+ YS+L+GA  L ++ ++     Q AIA TD   LF A +F ++A  AG
Sbjct: 7    RSEDFVHLHVHTEYSMLDGAARLGDLFEETKRVGQSAIATTDHGYLFGAYDFWKQATDAG 66

Query: 67   IQPIIGCQLDIDMQ----DNLKM-------TNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++PIIG +  +       DN ++        +   +       + +     EG   L   
Sbjct: 67   VKPIIGVEAYVTPGTSRFDNTRVRWGDASQASDDVSARGAYTHLTMWARNNEGMHNLFRA 126

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S   L  Q  +  R+    L+   + GLI  TG  SG +           A K     +
Sbjct: 127  SSLASLEGQMGKWPRMDRDLLERY-SPGLIASTGCPSGEVQTRLRLGHYDEAVKAAGELQ 185

Query: 176  KLFG-DRLYVNLQRHRGYDRYRESQV----VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             +FG +  YV L  H G D   E++V    ++LA     P+VATN+  ++ +ED  + + 
Sbjct: 186  DIFGKEYFYVELMDH-GLDI--ETRVFKDLLRLAKDIGAPIVATNDLHYVRQEDSGSQEA 242

Query: 231  LMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
            L+A+   + ++  DR +   D +Y+K+ +EM  ++ +LPEA +NT+ IA +C       A
Sbjct: 243  LLAINSGSTLTDPDRFKFDGDGYYVKSAAEMRRLWKELPEACDNTLVIAEQCEVSFNTAA 302

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +P F     +D    E +    +   GL+ R   G         + R+R DFE  VI 
Sbjct: 303  NYMPNFPAPAGED----ETSWFIKEVETGLQYRYPDGI------PTEVRERADFETKVIT 352

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFL+VADFI W+K NNI VGPGRGSGAGS+ AYA+ ITD+DPL   L+FERFLN
Sbjct: 353  QMGFPGYFLVVADFINWSKDNNIRVGPGRGSGAGSMVAYAMRITDLDPLVHGLIFERFLN 412

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            PDR+SMPDFD+DF + RR EVIRYV +KYG +RVAQI+T+G+++AK AL+D  R L +PY
Sbjct: 413  PDRVSMPDFDVDFDERRRGEVIRYVTDKYGEDRVAQIVTYGTIKAKQALKDSSRLLGLPY 472

Query: 470  SQVDRLCKLIPNDPA---HPVSLQAI--ADDSR------FREARLADPSVDRLLEISQKL 518
            +  D+L K +P  PA     +SL  I   DD R      FR+   ADP   R++E+++ +
Sbjct: 473  AMGDKLTKAMP--PAIMGKDISLTGIFDPDDKRYSEAEEFRQVHAADPEAQRVVELAKGI 530

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R    HAAG+++   PL  ++P+ R ++    +TQF+    E+ GLIK DFLGL+ 
Sbjct: 531  EGLKRQWGVHAAGVIMSSEPLIDIIPIMRRLQDGAVITQFDYPKCEELGLIKMDFLGLRN 590

Query: 579  LTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT+L  +L+ +   G + +DL  +  DD  TY LL+   TLG+FQL+  GMR  L+ M+P
Sbjct: 591  LTILDDALENIVMNGKEAIDLESLTLDDPNTYALLSRGDTLGVFQLDGGGMRTLLKLMRP 650

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIY 691
            D  EDI A+ +LYRPGP+  ++   Y  RKNG +++V IHP ++  L E    T G+I+Y
Sbjct: 651  DNFEDISAVGALYRPGPMGANSHTNYALRKNGLQEVVPIHPELEEPLAEVLGTTHGLIVY 710

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVM IAQ+++G+SL +AD+LRRAMGKK K E+DKQ E F  G  + G S      +++
Sbjct: 711  QEQVMSIAQIVAGFSLGQADILRRAMGKKKKSELDKQFEGFSGGMVERGYSMAAVKALWD 770

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +L  F+DY FNK+H+AAY V+SY TA++K +YP E++AA +T   D+ +K   +  + R+
Sbjct: 771  ILLPFSDYAFNKAHSAAYGVVSYWTAFLKANYPTEYMAALLTSVRDDKDKSALYLNECRR 830

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870
              I ++PP VN+   +F      I + L A++ VG      I+    A + F S  DF  
Sbjct: 831  MGITVLPPDVNSSSANFTAVGKDIRFGLTAVRNVGANVVEAIVTTREAKQNFTSFTDFLD 890

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENI 926
            +V +   N+R +ESL+ AGA D   + R  L     Q++D++      V++       ++
Sbjct: 891  KVPAVVCNKRTIESLIKAGAFDSLDHPRRALQVVHEQAVDSVIG----VKRKEAEGQFDL 946

Query: 927  FAHEKGTFSDKITLEKFSVE---------NSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
            FA       D ++   FSV+            + FE E  +LG Y S HPL   + +L++
Sbjct: 947  FAGFGDEADDGMS---FSVDIPDLPDWEKKQLLAFERE--MLGLYVSDHPLSGLEHVLQQ 1001

Query: 978  MGIKGYEESVATI-------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                  E S+A +        G+ + +A ++ S Q+K +++G+    VT  +     E  
Sbjct: 1002 AA----EVSIAKLLTDEDRPDGSTVVIAGLITSLQRKMSKQGNPWAAVTIEDLDGGVEVM 1057

Query: 1031 FF 1032
            FF
Sbjct: 1058 FF 1059


>gi|308064219|gb|ADO06106.1| DNA polymerase III subunit alpha [Helicobacter pylori Sat464]
          Length = 1211

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1040 (37%), Positives = 596/1040 (57%), Gaps = 75/1040 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTYNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + P  P F       + E  + + ++ +    KA  GL+ RL    + K  H Q Y++RL
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFE-DDASYFAYKAREGLKERLF--LVPKEKHDQ-YKERL 349

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ 
Sbjct: 350  EKEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSVAGSLVAFALKITDIDPLKYD 409

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV
Sbjct: 410  LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512
             R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+        
Sbjct: 470  ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527

Query: 513  --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
              E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LI
Sbjct: 528  VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587

Query: 570  KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            KFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SGM
Sbjct: 588  KFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646

Query: 629  RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
             Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T
Sbjct: 647  FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPT 706

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     
Sbjct: 707  YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++
Sbjct: 767  AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856
              + R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E 
Sbjct: 827  IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEE 886

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
             A   + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +   
Sbjct: 887  RAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944

Query: 917  KNRTNKH----ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            K++ N+      ++F    G   +++ L+       ++    E E   LG + SG+PLD 
Sbjct: 945  KDKANEMMQGGNSLFGAMDGGTKEQVILDMTDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004

Query: 971  YKPILRKMGIKGYEESVATI 990
            +K       IKG++  V +I
Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019


>gi|154503521|ref|ZP_02040581.1| hypothetical protein RUMGNA_01345 [Ruminococcus gnavus ATCC 29149]
 gi|153795621|gb|EDN78041.1| hypothetical protein RUMGNA_01345 [Ruminococcus gnavus ATCC 29149]
          Length = 1157

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/1052 (36%), Positives = 601/1052 (57%), Gaps = 50/1052 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F ++A   GI+P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYREARKQGIKP 61

Query: 70   IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I+GC++ +       + T  G++ +     +VLL     GY  L+++VSR +  +     
Sbjct: 62   ILGCEVYVAPNSRFDRETAGGESRYH---HLVLLAENNTGYANLMKIVSRGFT-EGYYYK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187
             R+    L++   EG+I L+   +G + R      ++ A+K  L ++ +FG    ++ +Q
Sbjct: 118  PRVDKDLLRQY-HEGIIALSACLAGEVQRYLSRGLTEEAKKVALEYQDIFGKGNFFLEMQ 176

Query: 188  RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++   +Q  +QL+    + LV TN+  +   ED + HD+L+ +     +  ++R 
Sbjct: 177  DHGIPEQQLVNQRQIQLSKETGIELVVTNDIHYTYAEDAKPHDILLCIQTGKKLDDENRM 236

Query: 247  RVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R     +Y+K+  EM ++F    +ALENT +IA RC   ++     LP++     D    
Sbjct: 237  RYEGGQYYVKSPQEMEALFPYAKQALENTQKIANRCEVEIEFGVTKLPKY-----DVPDG 291

Query: 306  EEENELRNKAV-AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                E  NK    GLE          G  +++ ++RL +EL+ I  M +  YFLIV DFI
Sbjct: 292  MTSWEYLNKLCWEGLEKHY-------GEPSRELKERLRYELDTIRNMGYVDYFLIVWDFI 344

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++AK + I VGPGRGS AGS+ +Y L IT+IDP+R+ LLFERFLNP+R++MPD D+DFC 
Sbjct: 345  KYAKDHGIAVGPGRGSAAGSIVSYCLEITNIDPIRYQLLFERFLNPERVTMPDIDVDFCF 404

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YV  KYG +RV QI+TFG+L A+  +RDVGR + +PY+ VD + K+IP +  
Sbjct: 405  ERRQEVIDYVVRKYGKDRVVQIVTFGTLAARGVIRDVGRVMDLPYAFVDSIAKMIPQELN 464

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  +   R+    DP V  L+++ ++LEGL RH+S HAAG+VIG R +   VP
Sbjct: 465  ITID-KALQMNPELRKTYENDPQVKLLIDMCKRLEGLPRHSSMHAAGVVIGQREIDDFVP 523

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            + R     +  TQF M  +E+ GL+K DFLGL+TLT++Q ++     +  ++D+  I ++
Sbjct: 524  LSRASDGSI-TTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVQLAKSKNPELDMDQIDYN 582

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +    + T  T GIFQLES GM+  ++ ++P+ +EDIIA +SLYRPGP+D I  Y   
Sbjct: 583  DKQVLSYIGTGKTDGIFQLESGGMKGFMKELKPNSLEDIIAGISLYRPGPMDFIPQYIRG 642

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            KN    I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK  + 
Sbjct: 643  KNDAGSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKGDV 702

Query: 725  MDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            M K+++ F        + G  KNGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQT
Sbjct: 703  MQKERQIFVYGDEENGVPGCIKNGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQT 762

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K +YPVE++AA MT  ++N  K+ ++    RQ NIQI+ P +N    +F V  N I 
Sbjct: 763  AYLKYYYPVEYMAALMTSVIENPSKVAEYIYACRQMNIQILSPDINRGIGNFSVDGNNIR 822

Query: 837  YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK-LNRRVLESLVFAGALDCF 894
            Y LAAIK +G      I+E   +  PF +LEDF SR+  K  LN+R +E L+ +GALDC 
Sbjct: 823  YGLAAIKSIGRPVIAAIIEDRDEFGPFKNLEDFISRMSFKDGLNKRAIEHLIKSGALDCL 882

Query: 895  GYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSS 949
            G +R Q +    Q +D++ +  ++    +    + +   EK  F  K+  + ++S EN  
Sbjct: 883  GGTRKQFMSIYVQIVDHVNQEKKYAMTGQMTLFDMVGEEEKEQFEIKLPDVGEYSKEN-L 941

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIRGNNIR--LAAMV 1001
            + FE E  VLG Y SGHPL  Y+   RK      +  +  EE+      +  R  +  M+
Sbjct: 942  LAFEKE--VLGAYLSGHPLQEYEDKWRKSISATTLDFQPDEETGRAKVHDGTREIVGGMI 999

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +K  K T+    + +++  +     E   FP
Sbjct: 1000 TAKTIKHTKTNQMMAFLSLEDLVGTVEVIVFP 1031


>gi|225847875|ref|YP_002728038.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium azorense
            Az-Fu1]
 gi|225643592|gb|ACN98642.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium azorense
            Az-Fu1]
          Length = 1172

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/1056 (36%), Positives = 595/1056 (56%), Gaps = 44/1056 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSLL+GA+ + ++  K       A+ +TD  N+F A+EF Q+  + G++PI
Sbjct: 5    FVHLHLHTHYSLLDGAIKIKDLAKKAVEYGYKAVGLTDHGNIFGAVEFYQEMKSVGVKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IG +      +  +   +G     T  +  ++L      G++ L++L S  Y   +G   
Sbjct: 65   IGME-SYFTNNRFEKKGEGSDDILTDKNYHLILFAKDKTGFKNLMKLSSLSYT--EG-FY 120

Query: 129  VRICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             +  + W L E   EGLI  T    G I         + A+K     K +FG+ LY  +Q
Sbjct: 121  YKPRIDWELLEKYHEGLICQTACLKGFIPNLLSKGQYEEAKKYAKRLKDIFGEDLYFEIQ 180

Query: 188  RHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS---Q 242
             + G +   E+   +++LA    + +V TN+S +L+ ED  AHDV+ A+     +    +
Sbjct: 181  VN-GLEEQEEANKGIIKLAKELGIKVVGTNDSHYLNPEDQPAHDVIKALQMKETLQSLQE 239

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRF-IEK 298
            K +       +  +  EM   F    E L+NT+EIA +C+  +   +    + P++ I  
Sbjct: 240  KGKAFKVKGLHFTSPEEMYEKFKGYEEYLKNTMEIAEKCNVEIDTAETRGYLFPKYQIPG 299

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              +  Q++ +      +  GLE RL +         Q+YR+RL +E++VI  M F+ YFL
Sbjct: 300  IENPTQEDIKAYFEKLSKEGLEKRLEKEKNLSKEKLQEYRERLQYEIDVINNMGFAEYFL 359

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI +AK N IPVGPGRGS  GS+ AY L IT+IDPL+  L+FERFLNP+R+SMPD 
Sbjct: 360  IVQDFINYAKNNGIPVGPGRGSAGGSLVAYCLGITEIDPLKHGLIFERFLNPERISMPDI 419

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC + R++VIRYV++KYG + VAQIITF  +++K  +RDV R L  PY + D++ K+
Sbjct: 420  DVDFCMENREKVIRYVKDKYGEDSVAQIITFNFMKSKMVIRDVARVLGFPYQEADKIAKM 479

Query: 479  IPNDPAHPVSL---QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            I   P    +L   + +  +  FR+    DP V +LL++++KLEG  RH   HAAGIVI 
Sbjct: 480  ILPGPIQGSTLTIDENLEANPDFRKLYETDPKVKQLLDLARKLEGSARHTGIHAAGIVIA 539

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
              PL + VP+YRD   +   TQF MK +E+ GL+K DFLGLKTLT L      + +R G+
Sbjct: 540  PGPLDEYVPVYRDKDGN-KATQFEMKTLEQLGLVKMDFLGLKTLTELDLMKKLIKERHGI 598

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +++   +P DD   Y LL +  T G+FQLES GM+  L  ++P   ++IIA+++L+RPGP
Sbjct: 599  EINYQDLPLDDENVYKLLQSGKTTGVFQLESKGMQDLLVRLKPTVFDEIIAILALFRPGP 658

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            + + +V  Y  RK+G++ I      +  +LKET G+I+YQEQ+M ++ +LSG+S++EAD 
Sbjct: 659  LMSGMVDEYIERKHGRKPIEYPFEEVKEVLKETYGLIVYQEQIMFMSNILSGFSMAEADT 718

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LR+A+GKK  E M K K RF+ GA + G  +     +++ + KFA Y FNKSH+ AYA +
Sbjct: 719  LRKAIGKKNPETMAKMKGRFVEGAVERGFDREKVEKLWDDIEKFASYSFNKSHSTAYAYL 778

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +Y TAW+KT+Y  EF A  ++ E+ N  K      D   F I+++PP VN    +F +  
Sbjct: 779  TYWTAWVKTYYTDEFFAVKLSTEV-NDSKFLNLLIDMENFGIKLLPPDVNKSMAEFYIES 837

Query: 833  NR-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             + I + LA IK VG ++A+ I+ E   +  F  + DFC R+D+K  N+RVLESL+ AGA
Sbjct: 838  PKNIRFGLARIKNVGESSAKEIVKEREKNGEFVDIFDFCERLDTKTANKRVLESLIKAGA 897

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-------HEKGTFSDKITLEKF 943
             D     R  LL ++D      Q   +++     ++FA       + K T+ D  T  K 
Sbjct: 898  FDFEKVDRAILLNNVDKAISSGQKARESKMAGQNSLFALTTTPVVNVKHTYED--TGIKK 955

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN------NIRL 997
              E   +++E E  VLGFY SGHP++ YK  L+    K  E       G        ++ 
Sbjct: 956  LTEREKLKYEKE--VLGFYLSGHPINAYKKELKGKVAKIGEIYDLVFSGKRPEGDLKVKF 1013

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            A +V   + KKT+ G+ +   +FS+   + +   FP
Sbjct: 1014 AGVVDEIKLKKTKSGNTMMMFSFSDETGQIDCRAFP 1049


>gi|255281425|ref|ZP_05345980.1| DNA polymerase III, alpha subunit [Bryantella formatexigens DSM
            14469]
 gi|255267913|gb|EET61118.1| DNA polymerase III, alpha subunit [Bryantella formatexigens DSM
            14469]
          Length = 1150

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/1050 (36%), Positives = 595/1050 (56%), Gaps = 45/1050 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F + A A GI+P
Sbjct: 2    NFTHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGAMYGVIDFYRAARAEGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +         N G         +VLL     GY  LI++VS  ++ +      
Sbjct: 62   ILGCEVYVAPNSRFDRENTGGED--RYYHLVLLAENNTGYANLIKIVSAGFV-EGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L++   EG+I L+   +G I R       +  +K  L ++++FG    ++ LQ 
Sbjct: 119  RVDKELLRQY-HEGIIALSACLAGEIPRYLVRGLYEEGKKVALEYQEIFGKGNFFLELQD 177

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H     +    Q+++++    + LVATN+  +    D E HD+L+ +     +  +DR R
Sbjct: 178  HGIANQQIVNQQLLRMSAETGIELVATNDVHYTLASDAEPHDILLCIQTGKKLQDEDRMR 237

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM  +F    +ALENT +IA RC+  ++     LPRF     D  +  
Sbjct: 238  YEGGQYYVKSPEEMAQLFPYALQALENTQKIADRCNVEIEFGVTKLPRF-----DVPEGY 292

Query: 307  EENELRNK-AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               E  NK    GL +R           A++ ++RL++EL +I +M +  YFLIV DFI+
Sbjct: 293  TSWEYLNKLCFDGLALRYPPE------QAEELKERLNYELGIIQKMGYVDYFLIVWDFIR 346

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+ ++I VGPGRGS AGS+ +Y L IT +DP++++LLFERFLNP+R+SMPD DIDFC +
Sbjct: 347  YARDHDISVGPGRGSAAGSLVSYTLGITKLDPIKYNLLFERFLNPERVSMPDIDIDFCFE 406

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV  KYG +RV QI+TFG+L A+  +RDVGR + +PYS VD + K++P +   
Sbjct: 407  RRQEVIDYVVRKYGKDRVVQIVTFGTLAARGVIRDVGRVMDIPYSVVDSVAKMVPQELNI 466

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+ ++S  R+    DP + RL++++++LEGL RH S HAAG+VI  +   + VP+
Sbjct: 467  TLD-KALQENSELRKIYEEDPQMHRLIDMAKRLEGLPRHTSMHAAGVVICQKAADEYVPL 525

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
             R     +  TQF M  +E+ GL+K DFLGL+TLT++Q ++  + +  GV +D+  I +D
Sbjct: 526  SRGSDGSI-TTQFTMTTLEELGLLKMDFLGLRTLTVIQDAVKLVQKDTGVLLDMDKIDYD 584

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D    + L T  T G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   
Sbjct: 585  DKAVLNSLGTGKTDGVFQLESAGMQNFMKELKPQSLEDLIAGISLYRPGPMDFIPQYIRG 644

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            KN  E I    P + P+L+ T G I+YQEQVMQI + L GY+L  +D+LRRAM KK    
Sbjct: 645  KNHPETITYDCPQLKPILEPTYGCIVYQEQVMQIVRDLGGYTLGRSDLLRRAMSKKKASV 704

Query: 725  MDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            M+K++  F        + G  KNGIS+ +A  I++ +  FA Y FNKSHAAAYAV+SYQT
Sbjct: 705  MEKERRNFVYGNEEEGVPGCIKNGISEQVANKIYDDMIDFAKYAFNKSHAAAYAVVSYQT 764

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            AW+K +YP+EF+A+ MT  +DN  K+  +    R+  I+I+PP VN     F V + +I 
Sbjct: 765  AWLKYYYPLEFMASLMTSVIDNPPKVAAYHMTCRKMGIEILPPDVNCGEGGFSVENGKIR 824

Query: 837  YSLAAIKGVG-TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y L+AIK +G    A  + E   +  + SL++   R+  K +N+R LES + +GALD  G
Sbjct: 825  YGLSAIKSIGRPVIAALVEEREKNGRYTSLKNLVERMSGKDINKRTLESFIKSGALDSLG 884

Query: 896  YSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
             +R Q++    Q  D + +  +     + +  + +   EK  +  +I++           
Sbjct: 885  ATRRQMMTVYSQVCDAVNQERKTSLAGQMSLFDFVGEEEKKHY--EISMPDVGEYEKEQL 942

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIRGNNIR--LAAMVVS 1003
               E+ VLGFY SGHPL+ Y+ + RK         +  EE+   +  +  R  +  M+ +
Sbjct: 943  LAYEKEVLGFYVSGHPLEAYEELWRKRITNVTTDFQPDEETGIPLVQDQSRVTVGGMITA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K  K T+    + ++T  +     E   FP
Sbjct: 1003 KTIKYTKTNKTMAFLTLEDLLGTVEVVVFP 1032


>gi|225619527|ref|YP_002720784.1| DNA polymerase III subunit alpha [Brachyspira hyodysenteriae WA1]
 gi|225214346|gb|ACN83080.1| DNA polymerase III, alpha subunit [Brachyspira hyodysenteriae WA1]
          Length = 1236

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/987 (37%), Positives = 567/987 (57%), Gaps = 40/987 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNI--------------LDKIAADQQPAIAITDTNNLFSA 55
           SFVHL VH+ YS+L+GA  + ++              +D+      P IA+TD  N+F A
Sbjct: 2   SFVHLHVHTQYSILDGAARIKSLYSKKDKTKRLIPGLIDRAKELGMPGIAMTDHGNMFGA 61

Query: 56  LEFSQKACAAGIQPIIGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
           +EF  +A   GI PIIGC++ +  +     K+ N  +    +   ++LL    EGY  L 
Sbjct: 62  MEFFSEAKDKGIIPIIGCEVYVAPKTRFDKKIENSEEK---SAMHLILLAKDKEGYNNLC 118

Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
           +LV+  Y   +G          L E   +GLI L+    G I  A      + A K    
Sbjct: 119 KLVTFGYT--EGFYYRPRVDHELIEKYNKGLICLSACMGGEIPIAIRKKDYKQASKLAEY 176

Query: 174 FKKLFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
           +K +FG+  Y+ LQ H    ++   S + QLA  H + LV TN+  ++S+ED +AH++L+
Sbjct: 177 YKSIFGNDFYIELQDHNIPEEKALNSALYQLAKHHNIELVVTNDVHYVSKEDAKAHEILL 236

Query: 233 AVAHSTVVSQKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFI-LQVHAP 290
           A+     +    R +   + + LK   EM+  F+ LP+A ENTV+IA +C  + +     
Sbjct: 237 AIQTKATLDSPRRYKFPSNEFHLKTEEEMMKSFAKLPKAFENTVKIAEQCQDLNIMTKTY 296

Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +P +   E  +  + E   LRN  + GL  +     I K   A D   RL+ EL VI +
Sbjct: 297 YMPNY---ELPN-GETETTALRNMCMDGLN-KYYNNNIPK--EAMD---RLEMELGVIGK 346

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFL+V DFI +A+ +++ VGPGRGS AGS+ A+A  IT ++PL ++LLFERFLNP
Sbjct: 347 MGFEGYFLVVQDFINYARNHDVAVGPGRGSAAGSIVAFATGITKVNPLDYNLLFERFLNP 406

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
           +R SMPD D+DF  D+R+ +I YV+ KYG + V+QI TFG+L  ++ +RDV R + +  +
Sbjct: 407 ERKSMPDIDVDFQDDKREVIIDYVKEKYGKDNVSQIATFGALGGRSVIRDVCRVMGIDLA 466

Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
             DRL K IP+D    V +    D +   +    +  +  + EIS +L+GL R+   HAA
Sbjct: 467 TADRLAKSIPDDVKRVVDIYDHPDCAALVKEIEGNRELKNMYEISTRLDGLVRNVGLHAA 526

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           G++I   P+  L P+Y+D ++     Q+ M ++E AGLIK DFLG+K L L++ ++  + 
Sbjct: 527 GVIISSHPIMDLAPVYQDSKTGTRACQYEMTYVESAGLIKMDFLGIKNLRLIKDAIKDIK 586

Query: 591 QR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            R G+++D+  IP DD   Y +     T G+FQ ES GMRQ L  +QP   +D+++ V+L
Sbjct: 587 DRYGIEIDIDKIPLDDEAVYDIFRKADTGGVFQFESPGMRQMLINIQPTGFDDLVSSVAL 646

Query: 650 YRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
           YRPGP+++ +   Y +RKN +++IV  HP ++P+LKE+QGV+IYQEQ+M I++++ G++ 
Sbjct: 647 YRPGPLNSGMDKDYADRKNKRKEIVYKHPDLEPILKESQGVLIYQEQIMAISRVIGGFTA 706

Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
           +EAD LR+AMGKKI E+M+  +E+FI G  + G  K +   +F+ +  FA+YGFNKSH+ 
Sbjct: 707 AEADDLRKAMGKKIVEKMNSMEEKFIKGGLERGYDKELLTYLFDTMKGFAEYGFNKSHSV 766

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            YA+I+YQ A++K HYP+E+  A +   + + +KI  +  + +Q NI+I+  SV      
Sbjct: 767 CYALIAYQEAYIKAHYPMEYYVALLNTVIADTDKISLYLNEIKQKNIEIVTASVFESDAL 826

Query: 828 FKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           F   D +I Y+L A+KGVG   A  I E    +  F +LEDF  RVD   +NR+V E+L+
Sbjct: 827 FSQKDGKIVYALHAVKGVGIHAALAIQEEREKNGQFKNLEDFVKRVDVHLVNRKVYETLI 886

Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFS 944
             GA   FG++   LL SLD I  +A   +K   +    +F    E  + S  + +EK  
Sbjct: 887 KCGAFSEFGHTESALLSSLDAILAHASNYQKETLSGQTMLFDSMSEDDSGSASLVIEKQV 946

Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVY 971
              S++  ENE+ VLGF    HP   Y
Sbjct: 947 EYASNILMENEKEVLGFSLRYHPFARY 973


>gi|281358509|ref|ZP_06244989.1| DNA polymerase III, alpha subunit [Victivallis vadensis ATCC BAA-548]
 gi|281314991|gb|EFA99024.1| DNA polymerase III, alpha subunit [Victivallis vadensis ATCC BAA-548]
          Length = 1187

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/1030 (37%), Positives = 593/1030 (57%), Gaps = 48/1030 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YS+L+GA ++  +L      +  A+AITD   +    EF Q    AGI PI
Sbjct: 5    FVHLHLHTHYSMLDGACTVKGLLQLAQEHEMNAMAITDHGYMGGVEEFHQVLSGAGINPI 64

Query: 71   IGCQLDI---DMQD--NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            IG +  +   DM+D  + K  N+G         ++LL    +GY  L +++S     D  
Sbjct: 65   IGVEAYVAPGDMRDFDSNKPFNRGGF------HLILLCENEDGYSSLCKMMSAANK-DGF 117

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184
                RI    +++   +GLI  +    G I + +     + AE+ L  +  +FG D  ++
Sbjct: 118  HYKPRIDKELMRQY-HKGLICTSACIGGEISQYYLQGDVKRAEQALGEYLDIFGRDNFFI 176

Query: 185  NLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
             L  H G +  R+    +V+LA  ++L L+ATN+  ++ +ED EAH++++ +     +++
Sbjct: 177  ELMDH-GMEEERKCNKFLVELAKKNDLRLIATNDVHYMRKEDAEAHEIMLCIQTGARLAE 235

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            K      P+ Y K+ +EM  +F +LPE++ NT  IA RCS     + P +  + +    D
Sbjct: 236  KHFRFPAPEFYFKSEAEMKELFRELPESITNTRLIAERCSMKFH-YVPEVNHYPKFYMPD 294

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ-----RLDFELNVIARMKFSGYF 357
             +  + N+LR      +E R   G   +     D RQ     R+++EL VI +  F  YF
Sbjct: 295  GRLADRNDLREVCYDNMEYRY--GFDPRKTPELDDRQKKILERMEYELGVIEKTGFISYF 352

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
             +V+DFI+ AK  +IPVGPGRGSGAGS+ AY   ITDIDPLRF+L FERFLNP+R+S PD
Sbjct: 353  FVVSDFIRHAKGQDIPVGPGRGSGAGSLVAYLTRITDIDPLRFNLFFERFLNPERVSPPD 412

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC+ RR EVI YV+ +YG + VAQI T+G L+AKA ++DV R L   +   +RL K
Sbjct: 413  FDVDFCERRRGEVIDYVRGRYGFDSVAQICTYGQLKAKAVVKDVARVLGCDFEFGNRLSK 472

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP DP   +  +A+  +    E    DP + ++ + ++ LEGL R    HAAG++IGD+
Sbjct: 473  MIPEDPKMTLD-KAVEQNKELAEKIETDPMIAKVWKFAKVLEGLNRQTGIHAAGVIIGDQ 531

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKV 596
             L  LVP+ R   SD  V  F     E+ GL+K DFLGLKTLT+++ +LD + +  G+ +
Sbjct: 532  RLDNLVPLARSA-SDSMVVPFPAHPCEEQGLLKMDFLGLKTLTIIKDALDMIKKDYGIVI 590

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D   IP DD +T+ +L    T+ +FQLES GM+        + +E IIAL+++YRPGP+ 
Sbjct: 591  DTMKIPLDDPKTFEMLQRGDTVAVFQLESGGMQNLCRSFGVETLEHIIALLAIYRPGPMQ 650

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I  +  RK G+EKI+  HPL++  LKET G+++YQEQ+MQ+ Q+L+G++L  AD+LRRA
Sbjct: 651  FIPDFIRRKKGEEKIIYDHPLMEDCLKETYGIMLYQEQIMQVVQVLAGFTLGGADILRRA 710

Query: 717  MGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            +GKK  + + KQKE+F  G  + N I + +A  I+E +  FA YGFNKSH+AAY  + YQ
Sbjct: 711  IGKKKVDVLAKQKEKFFKGCKETNNIDEKLADQIWEKIKLFAGYGFNKSHSAAYGFVCYQ 770

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K +YPV+F+AA +  E+++ E+I       ++  I ++PP VN+  + F   +  I
Sbjct: 771  TAYLKANYPVQFMAAILNGEIESAERIAFMINTCKEMGINVLPPDVNSSDIRFSTDNGNI 830

Query: 836  YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L AIKGVG   A  I+E+   D  F++  DFC R  S  +N R+LE L  AGALD  
Sbjct: 831  RFGLGAIKGVGEVAASQIIESRQKDGKFETFLDFCERCGS-NVNSRMLEHLTRAGALDGL 889

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT------LEKFSVENS 948
            G  R Q+L   + +  +A    ++R     ++F    G  +D         + +F  E+ 
Sbjct: 890  GLRRSQILAIAEPMMAFAAGRARDRAAGQGSLFDLLDGGDADDACSVPIPDIPEFDKEDI 949

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILR---KMGIKGYEESVATIRGN-NIRLAAMVVSK 1004
                ++E+ +LGFY +GHPLD Y  ++R    + I+  EE    +  N  IR+A MV + 
Sbjct: 950  ---LKSEKELLGFYVTGHPLDPYAELVRTYSTVPIRSLEE----LNDNAQIRIAGMVNTF 1002

Query: 1005 QQKKTRKGSR 1014
             QK ++   +
Sbjct: 1003 TQKLSKNSGK 1012


>gi|332180545|gb|AEE16233.1| DNA polymerase III, alpha subunit [Treponema brennaborense DSM 12168]
          Length = 1179

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/1050 (36%), Positives = 588/1050 (56%), Gaps = 53/1050 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+GA  +  ++ +       A+A+TD  N+F AL F Q     GI+P+
Sbjct: 29   FVHLHVHSDYSLLDGAAKVKTLVARAKELGMSALALTDHGNMFGALRFEQLCHKEGIKPL 88

Query: 71   IGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            +GC+  +    +   K T QG   +     ++L+    EGY+ L+ L SR Y  +     
Sbjct: 89   VGCEFYVAGSSRHEHKGTEQGNKYY----HLILIAKNVEGYRNLMMLTSRSYT-EGMYYK 143

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             RI    ++E  + GL+ L+   +G + +    N ++ AE  +  ++ +FG +  ++ LQ
Sbjct: 144  PRIDEELIREY-SGGLVCLSACLAGQLPQLLLNNQNKEAEDLVRRYRDIFGAENYFIELQ 202

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             H G  + +E   +++ +A    +P+V TN+  +  +EDY A DVL+ +        +D 
Sbjct: 203  DH-GIAQQKEVAPKLIDIARKLGVPMVVTNDIHYCLKEDYIAQDVLVCIGTKKT---RDD 258

Query: 246  PRVT----PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            PR       + Y+K   EM  +F   PE +ENT  +A  C   +       P+F  KE  
Sbjct: 259  PRRMKFEGTEFYMKTGEEMAQLFPAYPEMIENTKRVADMCDLTI-------PQFSTKELK 311

Query: 302  DIQ---------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            D           K +++ +R+    GLE R  +         ++ RQR ++EL +I +M 
Sbjct: 312  DCLPVYQIPPEFKTQDDYVRHLVYKGLEKRYPE-------ITEEIRQRAEYELGIIFQMG 364

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            FSGYFLIV DFI WAK+N+IPVGPGRGSGAGS+ AYA+TITDIDP RF+L+FERFLNP+R
Sbjct: 365  FSGYFLIVWDFINWAKQNDIPVGPGRGSGAGSLVAYAMTITDIDPFRFNLIFERFLNPER 424

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFD+D C + R +VI Y + KYG  +V  I+TFG+L+AKA ++DV R L +P S+V
Sbjct: 425  ISMPDFDVDICYEGRQDVIEYTRRKYGDPQVGHIVTFGTLKAKAVIKDVARVLDIPLSEV 484

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRLLEISQKLEGLYRHASTH 528
            + L KL+P+ P   +      ++      +LA    DP    L ++  KLE   R+ S H
Sbjct: 485  NILTKLVPDGPKVHLKDAFEVNEKIPGSGQLAPYRNDPRYKELFDLCFKLEDNNRNTSLH 544

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            A+GIVIG   L +  P+Y+D ++     Q+ M  IE  GL+K D+LGLKTLTL++ +   
Sbjct: 545  ASGIVIGKSKLPEWAPVYKDSKTGKVAVQYTMDIIEPCGLVKMDYLGLKTLTLIKYAERI 604

Query: 589  LAQRG--VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            + +R    +     +   D +T+ L     T  +FQ ES GM++ L+  QP  +EDI+AL
Sbjct: 605  IRKRPGYEQFRADEVSETDEKTFDLFCAGQTSAVFQFESPGMQKILKQAQPRRLEDIVAL 664

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
             +LYRPGP+D I  Y   K    KI    P +  +L+ET GV++YQEQVMQ+AQ ++GYS
Sbjct: 665  NALYRPGPMDYIPQYIEGKFDSSKITYPDPCLKSILEETYGVMVYQEQVMQVAQRIAGYS 724

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  E M  +K +FI GA KNG +   A +IFE++  FA YGFNKSHA
Sbjct: 725  LGGADMLRRAMGKKKVEVMAAEKTKFIEGAVKNGFTAEHAADIFEIMIPFAGYGFNKSHA 784

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAY+V++Y+TA++K ++P EF+AA++T E+ + +K+ ++  + R   ++I PP +N    
Sbjct: 785  AAYSVVAYRTAYLKANFPAEFIAANLTNEITSTDKLPEYITEGRSMGLEIDPPDINRSDK 844

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             F V D RI + L  IKG+G   A  I+    A+ P+    +F  RV++  +N++ +E L
Sbjct: 845  VFDVVDGRIVFGLLGIKGLGEAAADAIIAERKANGPYTDFMNFLDRVNTHDVNKKAIEVL 904

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT--FSDKITLEKF 943
            +  GA D    +R  L  +++    YA+  +        ++F  + G   F+D    E+ 
Sbjct: 905  IKTGAFDKLDKNRATLTANMERAIDYAESKKSAGRFGQVSLF-EDSGVQEFADFKYEEQP 963

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
             +    +    E+ ++G Y SGHPLD Y+  ++               G   ++  ++ +
Sbjct: 964  EIPVMEM-LNMEKELIGCYVSGHPLDKYRETIKNAATVTSATMGRAQEGKQYQIIGLLKN 1022

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +   T+KG+++ +    +    ++  FFP
Sbjct: 1023 IRTITTKKGAQMAFAQLEDLNGSFDLTFFP 1052


>gi|308185224|ref|YP_003929357.1| DNA polymerase III subunit alpha [Helicobacter pylori SJM180]
 gi|308061144|gb|ADO03040.1| DNA polymerase III subunit alpha [Helicobacter pylori SJM180]
          Length = 1211

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1041 (37%), Positives = 598/1041 (57%), Gaps = 77/1041 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +++  +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKEDKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+ L S  YL  +
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLMFLSSMAYL--K 113

Query: 125  GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLT 173
            G     RI    L+E  ++G+I  +    G ++          R +       A++    
Sbjct: 114  GFYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACE 172

Query: 174  FKKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            ++++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M
Sbjct: 173  YQEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAM 232

Query: 233  AVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---- 287
             VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +    
Sbjct: 233  CVAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDK 292

Query: 288  -HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             + P  P F       + E  + + ++ +   +KA  GL+ RL    + K  H Q Y++R
Sbjct: 293  KNPPTPPSFKFTKAYAQNEGLNFE-DDASYFAHKAREGLKERLI--LVPKEKHDQ-YQER 348

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L+ E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++
Sbjct: 349  LEKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKY 408

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RD
Sbjct: 409  DLLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRD 468

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL------- 512
            V R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+       
Sbjct: 469  VARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAK 526

Query: 513  ---EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
               E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   L
Sbjct: 527  QVWEYSLNLENLNRNAGVHAAALVVDSQKELWYKTPLFASEKTGGIVTQYSMKYLEPVDL 586

Query: 569  IKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            IKFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SG
Sbjct: 587  IKFDFLGLKTLTVIDDALKIIKTQHKIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SG 645

Query: 628  MRQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE 684
            M Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK 
Sbjct: 646  MFQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKP 705

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G    
Sbjct: 706  TYGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQ 765

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
             A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + +
Sbjct: 766  KAANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVAR 825

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIME 855
            +  + R   I++MPP +N+   DF V          + +I + L A+KGVG    ++I+E
Sbjct: 826  YIDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIE 885

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
                  + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  
Sbjct: 886  ERTKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR-- 943

Query: 916  EKNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLD 969
             K++ N+      ++F   +G   +++ L+   +   ++    E E   LG + SG+PLD
Sbjct: 944  AKDKANEMMQGGNSLFGAMEGGIKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLD 1003

Query: 970  VYKPILRKMGIKGYEESVATI 990
             +K       IKG++  V +I
Sbjct: 1004 EFKE-----EIKGFKNLVKSI 1019


>gi|240142402|ref|YP_002966912.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1]
 gi|240012346|gb|ACS43571.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1]
          Length = 1316

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/1084 (36%), Positives = 601/1084 (55%), Gaps = 82/1084 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNI---LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            FVHL V S +S   G   ++ +   + + AA  QPA+A+TD  N+F   +FS  A   G+
Sbjct: 6    FVHLNVLSDFSFSHGTRGVSGVKELVARAAALGQPALALTDDMNMFGVYKFSSAAAEKGV 65

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGK 126
            QPI+G ++ +        TN          ++ LL S+  GY  L  L+      D +G+
Sbjct: 66   QPIVGTKIWV----RAGATN-------VFGTMQLLASSETGYVNLCRLLKVALFPDAEGR 114

Query: 127  QSVRICLSWLQEIG-------TEGLIMLTGGSSGPIDRAF--FFNSSQVAEKRLL----- 172
             S     S++Q +G       ++ ++ L+GG  G + R +     ++Q A   L      
Sbjct: 115  ISAHKDRSYVQ-LGHLLNAEYSQDVVCLSGGKDGFMSRVWDAARQNAQGAADWLSWVEDP 173

Query: 173  -TFKKLFGDRLYVNLQRH---RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
                 +FGDR +  + R+      D  RE+ ++  A     P+VAT   L+ +EE ++A 
Sbjct: 174  GGLAAVFGDRFFFEICRNGVETDEDFAREAWLLDTAARQGRPVVATTQVLYAAEERHDAL 233

Query: 229  DVLMAVAHS-----TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
            ++L AVA       TV     R RV   +++++ +EM  +F+DLP A +N +E+AR  +F
Sbjct: 234  EILSAVARKENGSITVGPGTLRARVEARYHMRSDAEMRELFADLPTAYDNALEVARCTAF 293

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
             +    P LPRF     D   + E  EL ++A  GLE R  +   ++    Q+YR RL+F
Sbjct: 294  KVAKRKPRLPRF-----DAAGRSEREELVHQARTGLEERFGELGTSEEAR-QEYRDRLEF 347

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL VI +M F GYFLIV+DFI+WA  +++PVGPGRGSGAGS+ AYAL IT++DPLRF LL
Sbjct: 348  ELGVIGKMGFDGYFLIVSDFIKWALAHDVPVGPGRGSGAGSLVAYALRITNLDPLRFGLL 407

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNPDR+SMPDFDIDFC   R  V++YV+ +YG + V+QI +FG +++K A++D GR
Sbjct: 408  FERFLNPDRVSMPDFDIDFCIQGRASVVQYVRERYGSDLVSQIASFGEIKSKTAIKDAGR 467

Query: 464  AL------QMPYSQVDRLCKLIPNDPAHPVSLQAIADD-SRFREARLADPSVDRLLEISQ 516
             L         YS+ D + KL+P    +P +L+   D+    R+   A      L + ++
Sbjct: 468  VLTHERDGSYGYSETDGMTKLVPMVQGNPYTLKRAYDEIPDLRQFVDASEKTRVLFDNAR 527

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            K+EGL R    HAAGI+IGD PL +L+P+  +    +P+ QF++K  E  GL+KFDFLGL
Sbjct: 528  KIEGLLRQRGVHAAGILIGDVPLEELLPVTWNATDGMPLAQFDLKGAEDVGLVKFDFLGL 587

Query: 577  KTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            +TL++L+ +  ++   RGV +D   IP DD   Y +     T  IFQ ES GM++AL  M
Sbjct: 588  ETLSVLKLARQYVKDSRGVDLDFDKIPLDDAGVYEIFARGMTNAIFQFESGGMKRALREM 647

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL--IDPMLKETQGVIIYQE 693
            +P  IED+IA  +LYRPGP++ I VYN+ KNG+++     P     P+L+ET G+++YQE
Sbjct: 648  KPTRIEDLIAANALYRPGPMEMIPVYNDCKNGRQEPDYPEPREKTKPILEETFGIMVYQE 707

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVM +A+ ++G +L +AD+LRRAMGKKIK EMD QK  F+ GA ++G S   A  +F+ +
Sbjct: 708  QVMAVARAVAGLTLGQADLLRRAMGKKIKAEMDAQKAGFVKGALEHGTSARTAEELFDKI 767

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM--DNVEKIKKFCQDARQ 811
            AKFA+YGFNKSH+AAYA+I+Y T W+K HYP EF AA ++ E   +NV ++    +D   
Sbjct: 768  AKFAEYGFNKSHSAAYALIAYHTGWLKKHYPQEFYAAVLSFEAAKNNVHEMSLVKEDLDA 827

Query: 812  FNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
            F I ++PP VN     F          I + L  IKG+       + E  A+ PF ++ D
Sbjct: 828  FGIPLLPPDVNRSTGQFAPERTEQGGAIRFGLVGIKGLSGGIDAMVAEREANGPFRTVAD 887

Query: 868  FCSRVDSKKLNRRVLESLVFAGA-----LDCFGYSRMQLLQSLDNIQKYAQWVEKN-RTN 921
            F  R  +   NR  +E+L   GA     +   G       ++    Q +A   ++  ++ 
Sbjct: 888  FGRRT-AGLFNRSQIENLAAVGAFVGLPIVAGGPPETNRAKAAIAAQFFANGAKREAKST 946

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK---- 977
                +FA E+ T  +++  E  S        + E R +GFYF  HPL + +P + K    
Sbjct: 947  DQFGLFAAEE-TAREELPEEMHSTAEWPDIPDREFRAVGFYFDQHPLKMLRPRMAKADLE 1005

Query: 978  -----MGIKGYEESVATIRGNNIRLA---AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +G +G    + T R  +   A   AM+ + ++  T +G R+  V  S+    Y  
Sbjct: 1006 NEDVRVGTRGSVYEIMTARRESETRAVVVAMIENVRKTTTERGPRLD-VEASDTTGNYRF 1064

Query: 1030 NFFP 1033
              +P
Sbjct: 1065 YVYP 1068


>gi|108563880|ref|YP_628196.1| DNA polymerase III subunit alpha [Helicobacter pylori HPAG1]
 gi|107837653|gb|ABF85522.1| DNA polymerase III alpha-subunit [Helicobacter pylori HPAG1]
          Length = 1211

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/1039 (37%), Positives = 597/1039 (57%), Gaps = 73/1039 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + P  P F       + E  + + ++ +   +KA  GL+ RL    + K  H Q Y++RL
Sbjct: 294  NPPTPPSFKFTKAYAKNEGLNFE-DDASYFAHKAREGLKERLI--LVPKEKHDQ-YKERL 349

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ 
Sbjct: 350  EKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV
Sbjct: 410  LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512
             R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+        
Sbjct: 470  ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527

Query: 513  --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
              E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LI
Sbjct: 528  VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587

Query: 570  KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            KFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SGM
Sbjct: 588  KFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646

Query: 629  RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
             Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T
Sbjct: 647  FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPT 706

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     
Sbjct: 707  YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++
Sbjct: 767  AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856
              + R   I++MPP +N+   DF V          + +I + L A+KGVG    ++I+E 
Sbjct: 827  IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEE 886

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
                 + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +
Sbjct: 887  RVKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKD 946

Query: 917  K-NRTNKHENIF--AHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVY 971
            K N   +  N    A E GT  +++ L+   +   ++    E E   LG + SG+PLD +
Sbjct: 947  KANEMMQGGNSLFGAMECGT-KEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEF 1005

Query: 972  KPILRKMGIKGYEESVATI 990
            K       IKG++  V +I
Sbjct: 1006 KE-----EIKGFKNLVKSI 1019


>gi|220928884|ref|YP_002505793.1| DNA polymerase III DnaE [Clostridium cellulolyticum H10]
 gi|219999212|gb|ACL75813.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10]
          Length = 1159

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/1065 (36%), Positives = 610/1065 (57%), Gaps = 67/1065 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL VH+ YSLL+GA  + +++ ++      ++AITD   ++  +EF ++A   GI+P
Sbjct: 3    NFVHLHVHTEYSLLDGANRIKDLIQRVKELGMDSVAITDHGVMYGVVEFYKEAVENGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF--PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            I+GC++        K T Q K P        +VLL     GY+ L+++VS +   +    
Sbjct: 63   ILGCEVY-----TAKRTMQDKQPGIDSDYGHLVLLAKNQIGYKNLMKIVS-LGFTEGYYY 116

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNL 186
              R+    L+   +EG+I L+   SG I  A   N  + A +      ++FG    Y+ L
Sbjct: 117  KPRVDYETLERY-SEGIIALSACLSGDIPSAILSNDYEKAVELANRLNRIFGQGNFYLEL 175

Query: 187  QRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            Q H G +        +++++    +PLVATN++ +L++E  ++H++L+ +     ++  +
Sbjct: 176  Q-HNGINEQNLVNQHLIKMSGELGIPLVATNDAHYLTKESAKSHEILLCIQTGKTINDDN 234

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R   D  Y+K+  EM   F ++ +ALENTV+IA  C+  L+     LP F      D+
Sbjct: 235  RMRFNTDEVYVKSPEEMYDNFKNIKQALENTVKIAEMCNVELEFGKLHLPSF------DV 288

Query: 304  QK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            ++       LR +   GL+ R  +        +++   RL++EL+VI++M +  YFLIV 
Sbjct: 289  EEGYTPYEYLREQCYKGLKSRYGESC------SEEIVHRLEYELSVISQMGYVDYFLIVW 342

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++A+  +I VGPGRGS AGS+ +YAL IT IDPL+++LLFERFLNP+R+SMPD DID
Sbjct: 343  DFIRYARDQDIMVGPGRGSAAGSIVSYALGITSIDPLKYNLLFERFLNPERISMPDIDID 402

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR EVI YV  KYG +RV+QIITFG++ A+A +RDVGRAL +PY  VD + K+IP 
Sbjct: 403  FCYERRQEVIDYVIRKYGKDRVSQIITFGTMAARAVIRDVGRALDIPYGDVDAIAKMIPF 462

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  +A+  +   ++    D     L++ ++ LEGL RHASTHAAG+VI   P+ +
Sbjct: 463  QIGMNID-KALELNQELKKRYDTDEETQVLIDTARTLEGLPRHASTHAAGVVISKEPIVE 521

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
             VP+   +  +   TQ     +E+ GL+K DFLGL+TLT+++ ++D + Q  G K+D+  
Sbjct: 522  YVPL--QLNDNSVTTQVTAVPLEELGLLKMDFLGLRTLTVIRDAVDLVEQGHGRKIDIQQ 579

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            I FDD + Y ++    T+G+FQLES+GM Q ++ +QP  +EDIIA +SLYRPGP+D I  
Sbjct: 580  IDFDDKDVYKMIGEGRTVGVFQLESAGMTQFMKELQPTSLEDIIAGISLYRPGPMDQIPR 639

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y   KN  + I   HP+++ +L  T G ++YQEQVMQI + L GYS+  +D++RRAM KK
Sbjct: 640  YIRNKNNPKHIRYHHPMLEKILDVTYGCMVYQEQVMQIVRELGGYSMGRSDLVRRAMSKK 699

Query: 721  IKEEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
                M+++++ FI             GA KNG+ +  A  IF+ +  FA Y FNKSHAAA
Sbjct: 700  KISVMEQERKNFIYGITDEEGNEIVKGAVKNGVDEITANKIFDEMMDFASYAFNKSHAAA 759

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YAV++YQTAW+K +YP+EF+AAS+   + + +K+ ++  + +  NI+++PP +N   V F
Sbjct: 760  YAVVAYQTAWLKFYYPIEFMAASINSFLGSSDKVSQYVNECKILNIKVLPPDINESNVKF 819

Query: 829  KVGDNRIYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V +  I + LAAIK VG    +  I+E   +  F S  DFC R++ + +N+R +ESL+ 
Sbjct: 820  TVINKNIRFGLAAIKNVGENAIKSVIVERQQNGEFKSFLDFCQRIEGRDINKRCIESLIK 879

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKF 943
            +GA D     R +L+   + +        K   +   +IF      ++    D   ++++
Sbjct: 880  SGAFDSLKVFRSKLMAVYERLLDGISQNRKKNMDGQLSIFDMMSEPQELLQEDYPDIKEY 939

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYEESVATIRGNN-------- 994
                ++V    E+ +LG Y SGHPL  Y+ IL   + +   E  + T   +N        
Sbjct: 940  P---ANVLLAMEKEMLGLYVSGHPLSEYQDILETNVNLYSSEMFIDTDENSNDIELNSKK 996

Query: 995  ------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  + +  +VVSK+ K T+  + + +V   +     E   FP
Sbjct: 997  LQDSMKVTVGGIVVSKKTKATKNNNLMAFVGLEDLYGTMELIVFP 1041


>gi|15835446|ref|NP_297205.1| DNA polymerase III subunit alpha [Chlamydia muridarum Nigg]
 gi|270285627|ref|ZP_06195021.1| DNA polymerase III subunit alpha [Chlamydia muridarum Nigg]
 gi|301337023|ref|ZP_07225225.1| DNA polymerase III subunit alpha [Chlamydia muridarum MopnTet14]
 gi|14194688|sp|Q9PJJ7|DPO3A_CHLMU RecName: Full=DNA polymerase III subunit alpha
 gi|7190859|gb|AAF39632.1| DNA polymerase III, alpha subunit [Chlamydia muridarum Nigg]
          Length = 1237

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/1047 (36%), Positives = 590/1047 (56%), Gaps = 65/1047 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+   + K      PA+A+TD  NLF A++F +      I+P
Sbjct: 2    TWIPLHCHSQYSILDATCSIKKFVAKAVEYHIPALALTDHGNLFGAVDFYKTCKQNAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +          + K+       ++LL    EGY+ L  L+S +   +      
Sbjct: 62   IIGCELYVAPSSRFDKKKERKSQVAN--HLILLCKDEEGYRNLC-LLSSLAYTEGFYYFP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L++  ++GLI L+   SG I +A    S +  EK LL ++ LF +  +  +Q H
Sbjct: 119  RIDRELLKQ-HSKGLICLSACLSGSIAQAAL-ESEEALEKDLLWYQDLFQEDFFSEVQLH 176

Query: 190  RG----------------YDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +                 Y ++ E Q      V+ ++    +  VATN+  +L  +D+ A
Sbjct: 177  KSSEEKIALFEEEWLRQNYYQFIEKQLKVKDAVLTVSKRLGISSVATNDIHYLDPDDWLA 236

Query: 228  HDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+ V           ++ V + K +   + + Y K+  EM  +F+D PE + NT+ +
Sbjct: 237  HEILLNVQSREPIRTAKQNTYVPNPKRKTYPSREFYFKSPQEMAELFADHPETISNTLIV 296

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKE---EENELRNKAVAGLEVRLAQGAIAK---- 330
            A RC+  L       P ++    +D+QK+    E E  N + A LE    QG   K    
Sbjct: 297  ADRCNLELDFVTKHYPIYVP---EDLQKKGSYSEEERYNASSAFLEQLCEQGLKTKYTPE 353

Query: 331  --GYHAQDY---------RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
              G+ AQ +         ++RL  E  +I       Y LIV D I WAK + IPVGPGRG
Sbjct: 354  LLGHIAQKFPEKDPLTVVKERLSLESTIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRG 413

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            SGAGSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R++VI Y   ++G
Sbjct: 414  SGAGSVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMIGREKVINYAIERHG 473

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             E VAQIITFG+++AK A++DVGR L  P S+V+ + K IP+  A   S  A+  D   R
Sbjct: 474  KENVAQIITFGTMKAKMAIKDVGRTLDTPLSKVNLIAKKIPDLNATIAS--ALESDPDLR 531

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
            +  + D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++
Sbjct: 532  QLYIDDAEAAEIIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYS 591

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTL 618
            MK +E  G++K DFLGLKTLT +  +   + ++ G+ +  + +P +D  T+ LL    T+
Sbjct: 592  MKPVESVGMLKVDFLGLKTLTSIHVATKAIYKKTGILLQAATLPLNDRNTFSLLHQGKTM 651

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            GIFQ+ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL+
Sbjct: 652  GIFQMESRGMQELAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLM 711

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +P+LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S AS 
Sbjct: 712  EPILKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRASA 771

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NGI  +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D+
Sbjct: 772  NGIDPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDD 831

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-S 857
            +EK+ K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E   
Sbjct: 832  IEKVGKLIQEAHSMNIPVLPPDINESGQDFEATQEGIRFSLGAVKGVGVSIVDSIVEERE 891

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
             + P+ SL+DF  R D KK+ ++ LESLV AG+ +CF  ++   +  L+++       +K
Sbjct: 892  KNGPYRSLQDFVQRSDFKKVTKKQLESLVDAGSFNCFEPNKDLAIAILNDLYDTFSREKK 951

Query: 918  NRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPI 974
                     F+    T    K+T+   ++   S +   + E+ +LG Y + HP+D  K +
Sbjct: 952  EAATGVLTFFSLNSMTKDPVKVTISPENIVRRSDKELLKREKELLGVYLTAHPMDAVKHL 1011

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMV 1001
            L  + +   ++      G+ +R   ++
Sbjct: 1012 LPFLSVVQSKDFEGLPHGSVVRTVFLI 1038


>gi|208435328|ref|YP_002266994.1| DNA polymerase III alpha-subunit [Helicobacter pylori G27]
 gi|208433257|gb|ACI28128.1| DNA polymerase III alpha-subunit [Helicobacter pylori G27]
          Length = 1211

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1041 (37%), Positives = 597/1041 (57%), Gaps = 77/1041 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  ++      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+ L S  YL  +
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLMFLSSMAYL--E 113

Query: 125  GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLT 173
            G     RI    L+E  ++G+I  +    G ++          R +       A++    
Sbjct: 114  GFYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACE 172

Query: 174  FKKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            ++++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M
Sbjct: 173  YQEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAM 232

Query: 233  AVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---- 287
             VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +    
Sbjct: 233  CVAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDK 292

Query: 288  -HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             + P  P F       + E  D + ++ +   +KA  GL+ RL    + K  H Q Y++R
Sbjct: 293  KNPPTPPSFKFTKAYAQNEGLDFE-DDASYFAHKAREGLKERLI--LVPKEKHDQ-YQER 348

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L+ E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++
Sbjct: 349  LEKEIGVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKY 408

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RD
Sbjct: 409  DLLFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRD 468

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL------- 512
            V R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+       
Sbjct: 469  VARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNDTAR 526

Query: 513  ---EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
               E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   L
Sbjct: 527  QVWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDL 586

Query: 569  IKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            IKFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SG
Sbjct: 587  IKFDFLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SG 645

Query: 628  MRQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE 684
            M Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++ +LK 
Sbjct: 646  MFQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELESILKP 705

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G    
Sbjct: 706  TYGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQ 765

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
             A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + +
Sbjct: 766  KAANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVAR 825

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIME 855
            +  + R   I++MPP +N+   DF V          + +I + L A+KGVG    ++I+E
Sbjct: 826  YIDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIE 885

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
              A   + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L  LD I    +  
Sbjct: 886  ERAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLAHLDLICDAGR-- 943

Query: 916  EKNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLD 969
             K++ N+      ++F    G   +++ L+   +   ++    E E   LG + SG+PLD
Sbjct: 944  AKDKANEMMQGGNSLFGAMDGGTKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLD 1003

Query: 970  VYKPILRKMGIKGYEESVATI 990
             +K       IKG++  V +I
Sbjct: 1004 EFKE-----EIKGFKNLVKSI 1019


>gi|167760733|ref|ZP_02432860.1| hypothetical protein CLOSCI_03118 [Clostridium scindens ATCC 35704]
 gi|167661620|gb|EDS05750.1| hypothetical protein CLOSCI_03118 [Clostridium scindens ATCC 35704]
          Length = 1158

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/1052 (36%), Positives = 597/1052 (56%), Gaps = 49/1052 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      ++AITD   +F  ++F + A A GI+P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKECVSRVKELGMDSVAITDHGVMFGVIDFYRAAKAVGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G         +VLL  T  GY  L+++VSR +  +      
Sbjct: 62   ILGCEVYVAPGSRFDKEAVGSGD-NRYYHLVLLAETDLGYHNLMKIVSRGFT-EGYYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+ +  L+E   +G+I L+   +G + +       +  +   L ++++FG+   ++ LQ 
Sbjct: 120  RVDMEILKEF-HQGIIALSACLAGEVQKNIVRGMYEEGKAAALRYQEIFGEGNFFLELQD 178

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++   +Q ++++A   ++ LVATN+  +   ED +AHD+L+ +     V+ +DR R
Sbjct: 179  HGIQEQKLVNQSLLRMAKETQIGLVATNDVHYTYAEDEKAHDILLCIQTGKKVADEDRMR 238

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM ++F    EALENT +IA RC+  ++     LP++     D  +  
Sbjct: 239  YEGGQYYIKSEEEMKTLFPYALEALENTQKIADRCNVEIEFGVTKLPKY-----DVPEGY 293

Query: 307  EENELRNK-AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               E  NK    GL+ R   G           ++RL++EL+VI  M +  YFLIV DFI+
Sbjct: 294  TSWEYLNKLCYDGLKERYPDGE-------GSLKERLEYELSVIKSMGYVDYFLIVWDFIK 346

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+ ++I VGPGRGS AGS+ +Y L IT IDP+++ LLFERFLNP+R+SMPD D+DFC +
Sbjct: 347  YARDHDIMVGPGRGSAAGSIVSYTLGITSIDPIKYQLLFERFLNPERVSMPDIDVDFCFE 406

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV  KYG +RV QI+TFG++ A+  +RDVGR + +PY+ VD + K++P +   
Sbjct: 407  RRQEVIDYVVEKYGSDRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDGIAKMVPTELNI 466

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+  +  F+     D  V  L+++S++LEGL RH S HAAG+VI  + + + VP+
Sbjct: 467  TLE-RALTVNPEFKRMYQEDEQVRELIDMSKRLEGLPRHTSMHAAGVVISQKAIDEYVPL 525

Query: 546  YRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--GVKVDLSLIP 602
               + SD  V TQF M  +E+ GL+K DFLGL+TLT++Q ++  LA R  G  +++  I 
Sbjct: 526  --SLGSDGSVTTQFTMTTLEELGLLKMDFLGLRTLTVIQDAVK-LASRSSGKDINMEQID 582

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            ++D      + T  T GIFQLES GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y 
Sbjct: 583  YNDKAVLDSIGTGRTDGIFQLESGGMKSFMKELKPQNLEDIIAGISLYRPGPMDFIPQYI 642

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              KN  + I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK  
Sbjct: 643  KGKNHMDNITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKG 702

Query: 723  EEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            + M K+++ F        + G   NGI +  A  I++ +  FA Y FNKSHAAAYAV+SY
Sbjct: 703  DVMKKERQSFVYGNEAEGVPGCIANGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTAW+K +YPVEF+AA MT  ++N  K+ ++    RQ  I+I+PP +N     F V +  
Sbjct: 763  QTAWLKYYYPVEFMAALMTSVIENPGKVSEYIYTCRQMGIEILPPDINKGEGSFSVDNGN 822

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y LAAIK +G    + I+ E  A   F +++DF  R+  K++N+R +ES + +GA D 
Sbjct: 823  IRYGLAAIKSIGKPVIQAILTEREARGEFKNMKDFIERLSGKEVNKRTIESFIKSGAFDS 882

Query: 894  FGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
             G +R Q +    Q LD + +  ++    + +  + +   +K  F   I L         
Sbjct: 883  LGGTRKQFMVIYVQILDQVNQERKYSMTGQMSLFDMVDEDQKAEFD--IPLPDVGEYEKE 940

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIRGNNIR--LAAMV 1001
             +   E+ VLG Y SGHP++ Y+   RK      +  +  E++  T   +  R  +  M+
Sbjct: 941  TKLAFEKEVLGVYLSGHPMEEYEEKWRKSISKTTLDFQLVEDTGHTKVSDGAREIIGGMI 1000

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              K  K T+    + +VT  +     E   FP
Sbjct: 1001 TDKTIKYTKNNKVMAFVTLEDMLGSVEVVVFP 1032


>gi|148242424|ref|YP_001227581.1| DNA polymerase III subunit alpha [Synechococcus sp. RCC307]
 gi|147850734|emb|CAK28228.1| DNA polymerase III alpha subunit [Synechococcus sp. RCC307]
          Length = 1179

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/1064 (37%), Positives = 603/1064 (56%), Gaps = 61/1064 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +    AGI+P
Sbjct: 6    SFVPLHNHSDYSLLDGATQLPAMVQRAVDLGMPAVALTDHGVMYGAIELLKLCSKAGIKP 65

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVP---SIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IIG ++ +       +      P P       +V+L     GY+ L++L S  +L     
Sbjct: 66   IIGNEMYV-------VNGSIDDPQPKKERRYHLVVLAKNNVGYRNLVKLTSISHLRGMRG 118

Query: 127  QSV--RICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            + +  R C+    LQ+  +EGLI+ T    G I +A       VA +    ++ L GD  
Sbjct: 119  RGIFARACIDKHLLQQY-SEGLIVATACLGGEIPQAILRGRMDVARQVASWYRDLLGDDF 177

Query: 183  YVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +Q H    DR   + ++ L+    + L+ATN++ +LS +D EAHD L+ V    ++S
Sbjct: 178  YLEIQDHGSPEDRIVNTGLLTLSRELGIQLIATNDAHYLSRDDVEAHDALLCVLTGKLLS 237

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCSFILQVHAPILPRF 295
             + R R T   Y+K+R EM  +F D LP     +AL+NT+ +A +      +    +PRF
Sbjct: 238  DEKRLRYTGTEYIKSREEMERLFVDHLPAEVVQQALDNTMSVAEKVEDYDILGRYQMPRF 297

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
               E         + L      GL  RL   A +     + Y +R+  EL ++ +M F  
Sbjct: 298  PIPEG----HTPVSYLHEVTEQGLRQRLQLDADSS--IDELYGERMRHELKIMEQMGFPT 351

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+V D+I++A+ N IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SM
Sbjct: 352  YFLVVWDYIRFARDNGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSM 411

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D DFC  RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL
Sbjct: 412  PDIDTDFCIARRSEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRL 471

Query: 476  CKLIPNDPAHPVSL-QAIADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             KLIP     P  L Q I++DS    FR+   +DP V R +++++++EG  +    HAAG
Sbjct: 472  AKLIPVVRGKPAKLAQMISEDSPEPEFRQKYESDPQVKRWVDMARRIEGTNKTFGVHAAG 531

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-A 590
            +VI   PL +LVP+ R+    + +TQ+ M+ +E  GL+K DFLGLK LT+++K+L+ + A
Sbjct: 532  VVIAADPLDELVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIEKTLELVSA 590

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            + G + D   +P DD ETY LL      GIFQLES+GMRQ +  ++P  +EDI ++++LY
Sbjct: 591  EHGDRPDPDQLPADDPETYQLLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALY 650

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+D  ++  + NRK+G+E I      + P+L+ET G+++YQEQ+M+IAQ L+GYSL 
Sbjct: 651  RPGPLDAGLIPKFINRKHGREAIEFADAKLQPILQETYGIMVYQEQIMRIAQDLAGYSLG 710

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            EAD+LRRAMGKK   EM K +  F+ GAS+ G+   +A  +F+ +  FA+Y FNKSH+ A
Sbjct: 711  EADLLRRAMGKKKVSEMQKHRGIFVEGASQRGVDAKVADELFDQMVLFAEYCFNKSHSTA 770

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y  ++YQTA++K HYPV ++AA +T+     EK++++  ++    I ++PP VN   +DF
Sbjct: 771  YGAVTYQTAYLKAHYPVAYMAALLTVNAGVTEKVQRYIANSNAMGIAVLPPDVNRSGIDF 830

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEAS--ADKPFDSLEDFCSRVDS-KKLNRRVLESL 885
                 RI + L+A++ +G   A H + AS  +D PF SL + C R+    +LNRR LESL
Sbjct: 831  TPVGQRILFGLSAVRNLG-DGAIHALIASRQSDGPFTSLAELCDRMAGIGQLNRRSLESL 889

Query: 886  VFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTN--KHENIFAHEKGTFSDKITLE 941
            + +GALD      +R QL+  LD +  +A    ++R +   +                  
Sbjct: 890  IHSGALDALEPDGNRAQLMADLDLLLDWATARARDRASGQGNLLDLLGGGSEAEAASATP 949

Query: 942  KFSVENSSV-------RFENEQRVLGFYFSGHPLDVY---KPILRKMGIKGYEESVATIR 991
              + + +SV       +   E+ ++GFY S HPL      + +L  +G+    E     +
Sbjct: 950  ASAPKAASVPDYAPTEKLRLEKELVGFYLSDHPLKQLQDTRRLLMPVGLGSLSE-----Q 1004

Query: 992  GNNIRLAAMVVSKQQK--KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +  R++ +V+  + +   TRKG R+  +   +     EA  FP
Sbjct: 1005 SDRQRVSTLVMVPEMRVVTTRKGDRMAILQIEDLTGSAEAVVFP 1048


>gi|302873297|ref|YP_003841930.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
 gi|307688537|ref|ZP_07630983.1| DNA polymerase III DnaE [Clostridium cellulovorans 743B]
 gi|302576154|gb|ADL50166.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
          Length = 1204

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/1062 (36%), Positives = 607/1062 (57%), Gaps = 58/1062 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VH+ YSLL+G+  ++ ++ +       A+AITD   ++  +EF + A   GI
Sbjct: 2    SRDFVHLHVHTGYSLLDGSGKISLMVKRAKELGMNAMAITDHGVMYGCVEFYKAAKEVGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+G ++ +    ++ +  QG+        +VLLV  + GY  L+++VS   + D    
Sbjct: 62   KPILGSEIYV-ASKSMHIKEQGRKN--DTHHLVLLVKNSTGYDNLMKIVSAASI-DGFYY 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+   +L++  +EGLI L+    G +      ++  +A++  L +K+ F D  Y+ LQ
Sbjct: 118  KPRVDHDFLKK-HSEGLIALSACLGGEVQGHILKSNLDIAKETALFYKETFKDGFYLELQ 176

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++      ++ ++   ++PLVATN+  ++++ED  AHD+L+ +     + +K R 
Sbjct: 177  NHGMREQIMVNEHLIAMSKELDIPLVATNDIHYINKEDSRAHDILLCIQTGKTIDEKGRM 236

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQ 304
               P+  Y++++ EM  +F  + EAL+NTV+IA +C+F  + H   LP F +  E D  Q
Sbjct: 237  SYQPEQFYIRSQEEMEELFGYVEEALDNTVKIAEQCNFDYEFHVSKLPNFPLPSEQDHFQ 296

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                  LR+    GL         A+ Y    ++ + RLD+EL++I  M +  YFLIV D
Sbjct: 297  Y-----LRDTCYKGL---------AELYEEITEEIKVRLDYELDIIKTMGYVDYFLIVWD 342

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI++A +N IP GPGRGS AGS+ A+ L IT IDP+++SLLFERFLNP+R+SMPD D DF
Sbjct: 343  FIRFANENGIPTGPGRGSAAGSIVAFTLGITKIDPIKYSLLFERFLNPERVSMPDIDSDF 402

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV +KYG+E V+QIITFG++ A+  +RDVGRA+   YS+VD + K+IPN 
Sbjct: 403  CYERRQEVIDYVVDKYGYESVSQIITFGTMAARMCIRDVGRAMNYSYSEVDAIAKMIPNM 462

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+  +S  + A   +  V  L+++S+ LEGL RH STHAAG+VI  +PL   
Sbjct: 463  LGINIE-RALEVNSELKAAYEENERVRDLIDVSKTLEGLPRHTSTHAAGVVIASQPLVSY 521

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+ ++   +  VTQ+ M  +E+ GL+K DFLGL+TLT+L+ ++D + Q + +++DL  I
Sbjct: 522  VPLQKN--DEAIVTQYTMGTLEELGLLKMDFLGLRTLTVLKDAVDMVKQNKRIEIDLDKI 579

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
               D + Y ++    T+G+FQLES+GM   ++ ++PD +EDIIA +SLYRPGP+  I  Y
Sbjct: 580  DDADPKVYTMVGEGKTVGVFQLESAGMTSFMKDLKPDSLEDIIAGISLYRPGPMAEIPRY 639

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K    KI    P ++P+L  T GV++YQEQVM+I + L+GYS+  +D++RRAM KK 
Sbjct: 640  IEGKRNPAKIRYETPELEPILGVTYGVMVYQEQVMEIVRKLAGYSMGRSDLVRRAMSKKK 699

Query: 722  KEEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             + M+++++ FI             G  +NGIS   A  IF+ +  FA Y FNKSHAAAY
Sbjct: 700  HKVMEEERQNFIYGIVDKDGNIEVPGCLRNGISVEAANKIFDQMMDFASYAFNKSHAAAY 759

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            AV++YQTA+M  +YP EF+AA +   M N EK+  + + A++ +I+++PP +N     F 
Sbjct: 760  AVVAYQTAYMMCYYPTEFIAAMLNSVMGNNEKVAYYIRFAKEKDIEVLPPHINESYSKFT 819

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V   +I + +A+IK VG      I++   +K  F    DF  ++D   +N+R  ESL+ +
Sbjct: 820  VNKEKIRFGMASIKNVGGNVTDSIVKVREEKGKFKDFMDFAEKIDVSTVNKRAAESLIKS 879

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI---FAHEKGTFSDKITLEKFSV 945
            GA D FG  R QLL  ++ +       +K       N+   F ++  T   KI   K   
Sbjct: 880  GAFDEFGVYRSQLLAIMEKVLDGVSSQKKRNIQGQLNLFQDFENDDSTMDIKIEYPKIKE 939

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVY------------KPILRKMGIKGYEESVAT-IR- 991
                     E+ + G Y SGHPLD Y              I+    ++G E+   T IR 
Sbjct: 940  FEKKYILAMEKEMTGLYLSGHPLDEYVQTLNYVTNTNSSEIVSNQLLEGEEQLDNTKIRD 999

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            G+ + +   +    +K TR  + + ++   +     E   FP
Sbjct: 1000 GDKVIIGGTIAEISKKITRNNAMMAFLRLEDLYGSVEVIIFP 1041


>gi|295110725|emb|CBL24678.1| DNA polymerase III catalytic subunit, DnaE type [Ruminococcus obeum
            A2-162]
          Length = 1155

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1054 (37%), Positives = 605/1054 (57%), Gaps = 55/1054 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +   +D++      + AITD   ++  ++F + A AAGI P
Sbjct: 2    NFTHLHVHTEYSLLDGSNKIKEYVDRVRELGMDSAAITDHGVMYGVIDFYRAARAAGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +      +   +  +       +VLL    +GY  L+++VS+ ++ +      
Sbjct: 62   ILGCEVYV--APGSRFDREAGSGDDRYYHLVLLAENNQGYSNLMKIVSKGFV-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+ LS L++   EG+I L+   +G + R       + A+K  L ++ +FG    ++ LQ 
Sbjct: 119  RVDLSLLEKY-HEGIIALSACLAGEVARFLTRGMYEDAKKAALRYQDIFGKGNFFLELQD 177

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     Q++++     + LVATN+  +   ED + HDVL+ +     ++ +DR R
Sbjct: 178  HGIPEQQNVNQQLLKMHRETGIELVATNDVHYTLAEDAQPHDVLLCLQTGKKLADEDRMR 237

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM  +F   PEALENT +IA+RC   ++     LP+F   E      E
Sbjct: 238  YEGGQYYVKSPEEMERLFPYAPEALENTHKIAQRCHVEIEFGVTKLPKFGVPE-GYTSWE 296

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              NEL      GLE R            ++ ++RL++EL+ I  M +  YFLIV DFI++
Sbjct: 297  YLNEL---CFKGLEERYQP-------VTEELKERLNYELSTIRNMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ ++I VGPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  ARDHDIMVGPGRGSAAGSLVAYTLGITQLDPIRYDLLFERFLNPERVSMPDIDVDFCFER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV+ KYG + V QI+TFG+L A+  +RDVGR + +PY+QVD + K+IP +    
Sbjct: 407  RQEVIDYVRRKYGDDCVVQIVTFGTLAARGVIRDVGRVMDLPYAQVDTIAKMIPQELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +  F++A      +  L++ +++LEGL RH S HAAG+VI  + +S+ VP+ 
Sbjct: 467  ID-KALQMNPEFKKAYEEQKEIHDLIDTAKRLEGLPRHTSMHAAGVVISQKDVSEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            R     + VTQF M  +E+ GL+K DFLGL+TLT++Q ++  + Q  GVK+D+  I ++D
Sbjct: 526  RASDGSI-VTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVHLIEQDAGVKLDMQHIDYND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +    L T  + G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   K
Sbjct: 585  KKVLDSLGTGRSDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPQYIRGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  + I    P ++ +LK T G I+YQEQVMQI + L+GY+L  +D++RRAM KK    M
Sbjct: 645  NRPDTIKYDCPQLESILKPTYGCIVYQEQVMQIVRNLAGYTLGRSDLVRRAMSKKKAAVM 704

Query: 726  DKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K+++ F+ G  +        NGIS+  A  I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 705  EKERQNFVYGNEEEGVPGCIANGISEQTANKIYDDMIDFAKYAFNKSHAAAYAVVSYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YPVEF+AA MT  ++   K+ ++ Q  RQ NI+I+PP VN     F V +  I Y
Sbjct: 765  FLKYYYPVEFMAALMTSVIEMPTKVAEYIQVCRQMNIKILPPDVNRGAYGFSVDNGAIRY 824

Query: 838  SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+AIK VG      ++E   A+  + SL+DF  R+ +  +N+R +E+ + AGALDC   
Sbjct: 825  GLSAIKSVGRPVINALVEEREANGEYRSLKDFIERL-TGTVNKRAIENFIKAGALDCLEG 883

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF---SD------KITLEKFSVEN 947
            +R Q       +  Y Q V+     K +N FA +   F   SD      +I +      +
Sbjct: 884  NRRQ------KMLVYGQIVDSIAQEK-KNSFAGQMSLFDLVSDEEKKEYEIRMPDVEEYD 936

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKM------GIKGYEES--VATIRGNNIRLAA 999
              +    E+ VLG Y SGHPL+ Y+ I+ KM        +  EES       G  + +  
Sbjct: 937  KEMILAFEKDVLGIYLSGHPLERYRNIMEKMISAKTTDFQPDEESGIPKVYDGQKVIIGG 996

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            M+  K  K TR    + ++T  +     E   FP
Sbjct: 997  MITEKTIKYTRNNKVMAFLTVEDLLGTVEIVVFP 1030


>gi|317182665|dbj|BAJ60449.1| DNA polymerase III subunit alpha [Helicobacter pylori F57]
          Length = 1211

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/1040 (37%), Positives = 594/1040 (57%), Gaps = 75/1040 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +++  +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKEDKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDDQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + P  P F       + E  + + ++ +    KA  GL+ RL    + K  H Q Y++RL
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFE-DDASYFAYKAREGLKERLV--LVPKEKHDQ-YKERL 349

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ 
Sbjct: 350  EKEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV
Sbjct: 410  LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512
             R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+        
Sbjct: 470  ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527

Query: 513  --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
              E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LI
Sbjct: 528  VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587

Query: 570  KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            KFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+E SGM
Sbjct: 588  KFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646

Query: 629  RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
             Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T
Sbjct: 647  FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPT 706

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     
Sbjct: 707  YGTIVYQEQVMQIVQAIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+ A +T E + +E + ++
Sbjct: 767  AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMVAMLTSESNKIESVARY 826

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856
              + R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E 
Sbjct: 827  IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEE 886

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
                 + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +   
Sbjct: 887  RTKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944

Query: 917  KNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDV 970
            K++ N+      ++F    G   +++ L+   +   ++    E E   LG + SG+PLD 
Sbjct: 945  KDKANEMMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004

Query: 971  YKPILRKMGIKGYEESVATI 990
            +K       IKG++  V +I
Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019


>gi|154484297|ref|ZP_02026745.1| hypothetical protein EUBVEN_02010 [Eubacterium ventriosum ATCC 27560]
 gi|149734774|gb|EDM50691.1| hypothetical protein EUBVEN_02010 [Eubacterium ventriosum ATCC 27560]
          Length = 1161

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1061 (35%), Positives = 594/1061 (55%), Gaps = 57/1061 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +  I  +       ++AITD   ++  ++F + A   GI+P
Sbjct: 2    NFAHLHVHTEYSLLDGSSKIKEITKRAKELGMNSLAITDHGVMYGCIDFYRAALENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +      +   +          ++LL    EGY  L ++VS+ ++ +      
Sbjct: 62   IIGCEVYV--APGSRFEKEAGDNEDRYYHLILLAENNEGYANLCKIVSKGFV-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L++   EG+I L+   +G + +       +  ++  L ++K+FG    ++ +Q 
Sbjct: 119  RVDYEVLEKY-HEGIICLSACLAGEVQKYLARGEYEKGKEAALKYEKIFGKGNYFLEMQD 177

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     Q+++++   E+ LV TN+  +   +D EAHD+L+ +      + +DR R
Sbjct: 178  HGIPEQATVNQQLMRMSEELEIDLVCTNDVHYTFADDVEAHDILLCIQTGKKKADEDRMR 237

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  YLK+  EM  +F   P+A+ENT +IA RC+   +     +P F   E       
Sbjct: 238  YEGGQFYLKSPEEMYQLFKYAPQAMENTQKIADRCNVTFEFGVTKIPNFPVPE----GYT 293

Query: 307  EENELRNKAVAGLEVR--LAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                L+     GL  R  + +G + +  H   ++  +RL++ELN I  M +  YFLIV D
Sbjct: 294  SWTYLKELCETGLHNRYPVFKGEVDQNCHLTKEELEERLNYELNTIKNMGYIEYFLIVWD 353

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI +AK N I VGPGRGS AGS+ +Y L ITDI+P+R++LLFERFLNP+R+SMPD D+DF
Sbjct: 354  FIHYAKSNGIAVGPGRGSAAGSIVSYCLEITDIEPMRYNLLFERFLNPERVSMPDIDVDF 413

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  KYG + VAQI+TFG+L+A+  +RDVGR L MPY+QVD + K+IP +
Sbjct: 414  CIERRQEVIDYVGRKYGKDHVAQIVTFGTLKARGVIRDVGRVLDMPYAQVDNIAKMIPQE 473

Query: 483  PAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                ++L  A+  +   +    +DP V  L+++S++LEGL RHAS HAAG+VI  +P+ +
Sbjct: 474  LN--ITLDGALKQNRELKTLYDSDPEVKYLIDMSRRLEGLPRHASMHAAGVVICGKPVDE 531

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
             VP+ R     +  TQ+ M  +E+ GL+K DFLGL+ LT++Q +  F+ + RG+++DL  
Sbjct: 532  YVPLSRAADGSI-TTQYIMTTLEELGLLKMDFLGLRNLTVIQNAQRFIKKNRGIELDLMK 590

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            I ++D +    + T  T GIFQLES+GM+  ++ ++P  +EDIIA ++LYRPGP+D I  
Sbjct: 591  IDYNDKKVLDYIGTGNTEGIFQLESAGMKNFMKELKPQSLEDIIAGIALYRPGPMDFIPK 650

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y   KN ++ +    P + P+L+ T G I+YQEQVMQI + L+GYSL  +D+LRRAM KK
Sbjct: 651  YLEGKNNRDSVTYDCPQLIPILEPTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMSKK 710

Query: 721  IKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
             +  M+K+++ F        + G  KNGIS+ IA  I++ +  FA Y FNKSHAAAY V+
Sbjct: 711  KQAVMEKERQSFVYGNREEGVKGCIKNGISEEIANKIYDEMIDFAKYAFNKSHAAAYGVV 770

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTA++K +Y  EF+AA +T  MD   K+ ++    R   I+I+PP +N     F    
Sbjct: 771  AYQTAYLKYYYAAEFMAAMLTSVMDISTKVAEYVYSCRSMGIEILPPDINEGESGFSAKG 830

Query: 833  NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            N I Y L AIK VG      I+E       +  LEDF +R  +  +N+R +E+ + AGA 
Sbjct: 831  NSIRYGLTAIKNVGKNIIDGIVEEREKHGKYTDLEDFITRTANLGVNKRAIENFIKAGAF 890

Query: 892  DCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            D    +R Q++    Q LD + K      K+      +IF       +D  T EK+ V+ 
Sbjct: 891  DSLNATRKQMMMVYIQILDGVNK----ENKDAWEGQMSIF-----DMADDSTKEKYKVKM 941

Query: 948  SSV-------RFENEQRVLGFYFSGHPLDVYKPILRK----MGIKGYE----ESVATIRG 992
              V       +   E+ V+G Y SGHPL   +   RK    M I   E    E       
Sbjct: 942  PDVGEYTVDQKLAFEKEVIGIYASGHPLQAQEQKWRKHITNMSIDFTEPEEGEESKVPDK 1001

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + + +  ++ +  +K T+ G ++ ++T  +     E   FP
Sbjct: 1002 SKVAVGGIISAITKKFTKTGQQMAFITLEDLVGTVEVVVFP 1042


>gi|323142803|ref|ZP_08077516.1| DNA polymerase III, alpha subunit [Succinatimonas hippei YIT 12066]
 gi|322417448|gb|EFY08069.1| DNA polymerase III, alpha subunit [Succinatimonas hippei YIT 12066]
          Length = 1206

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/1068 (38%), Positives = 605/1068 (56%), Gaps = 88/1068 (8%)

Query: 23   LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
            ++G  S+  I+ + AA + PA+AITD +N+   ++F     +AGI+PI+G   DI++++ 
Sbjct: 1    MDGLESVGAIVKRAAALKIPALAITDISNICGFIKFYTACKSAGIKPIMGA--DIEVEEE 58

Query: 83   LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRICLSWLQEIGT 141
            +K   +  T F     + LL     G Q L +++S  +L  D G  + +  L+ L++  +
Sbjct: 59   VK-PGEKATSF----KLTLLAMDRVGQQNLYDILSDAWLRSDAGAFNAKTSLADLKKY-S 112

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EG+I+L G   G I        S+    RL  + + F DR    + R +R  +   E+  
Sbjct: 113  EGIIILDG-FRGDIAAMAQRKDSKAIRARLKFYLENFNDRFCFEITRTNRIGESEFENFA 171

Query: 201  VQLAYTHELPLVATNNSLFLSEED---------YEAHDVLMAVAHSTVVSQKDRPR-VTP 250
            + L   + +  VATN+++FL  ED         Y+ HDV +++        K+  R  + 
Sbjct: 172  LNLCVEYNIAPVATNDTVFLFGEDNVGKDGFSDYQIHDVRVSIQAGCQRGNKEMARKYSK 231

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            + YLK   +M ++F+D+PEAL+NT  IA RC+  +++  P LPR+      D+   E   
Sbjct: 232  EQYLKTPEQMEALFADIPEALQNTRNIAERCNIEIELDHPRLPRY---PTGDLSPAEY-- 286

Query: 311  LRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            LR KA  GLE RL         +    Q Y  RL+ EL+VI  M F GYFLIV +FIQW+
Sbjct: 287  LRKKAAEGLEERLEFLYPDEKERNEKRQTYVDRLNTELDVIINMDFPGYFLIVMEFIQWS 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K++ +PVGPGRGSG GS+ AY+L ITD DPLRF LLFERFLNP+R+SMPDFD+DFCQ  R
Sbjct: 347  KEHGVPVGPGRGSGGGSLVAYSLKITDFDPLRFDLLFERFLNPERISMPDFDVDFCQRNR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN------ 481
            ++ + +V+N+YG+  V+QI TFG++  KAA++D GRAL M Y  VD + K +P       
Sbjct: 407  EKTLEHVKNRYGNNAVSQIATFGTMAPKAAIKDAGRALGMGYGAVDFVAKQLPTQPGLTF 466

Query: 482  -------------DPAHP--VSL--QAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                         DP  P  V+L  +A+ DD R R           L+ I+ +LEG+ R+
Sbjct: 467  KAAMGIGKDGKPCDPLAPDFVNLYQKALQDDDRQRV---------ELIHIALRLEGVIRN 517

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HAAG+VI     ++  P+  D   +  +TQF+ K +E AGL+KFDFLGL TLT++  
Sbjct: 518  IGKHAAGVVISPTRTAEFSPLMLDSDGN-SITQFDKKDVEHAGLVKFDFLGLTTLTIIDD 576

Query: 585  SLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            +L  +  R  K     V++  +P++D E++ +L    T  +FQLES+GMR+ +  MQPD 
Sbjct: 577  ALTMINARKAKHHEPPVNIHAVPYEDPESFAVLQQCETTAVFQLESAGMRKLIGQMQPDR 636

Query: 640  IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQ 692
             +D+IALV+LYRPGPI + +V  +  RK+GKE++    P      + P+L  T GVI+YQ
Sbjct: 637  FDDLIALVALYRPGPIKSGMVDHFVQRKHGKEEVAYPSPDFQDLDLKPILDSTYGVIVYQ 696

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQIAQ+L+GYSL  AD+LRRAMGKK   EM  Q+  F  GA K G    IA+ IF+ 
Sbjct: 697  EQVMQIAQVLAGYSLGGADILRRAMGKKNPAEMAGQRSVFKEGAGKKGKDTDIAMKIFDQ 756

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA+YGFNKSH+AAYA++++ T W+KTHYP EFLAA MT +   VEK+  +  +  + 
Sbjct: 757  VEKFAEYGFNKSHSAAYALVAWWTLWLKTHYPAEFLAAMMTADRQRVEKLVSYIAECNRL 816

Query: 813  NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
             I++ PP V     +F V D   I Y + A+KG+G      I++  A KPF    DF  R
Sbjct: 817  KIKVNPPDVTEGLFNFTVNDAGEIIYGIGAVKGIGEDVVEDIIKERAQKPFKDFFDFVKR 876

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V  K LNRR  E+LV +GALD  G SR Q++ S+    KYA     +  +   ++FA   
Sbjct: 877  VGPKHLNRRTFEALVASGALDKLGPSRAQMMASIPTAMKYAVQESSDAASGQLDLFAAIS 936

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI- 990
             T +   T       +   R   E+ VLG Y SGHP+++Y   L     + Y  +++T+ 
Sbjct: 937  ETTAP--TFVACRPWSEKYRLYLEKNVLGLYLSGHPINIYIDEL----TRNYRSTISTLR 990

Query: 991  -----RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                 R N +    +V+S  ++ ++  GS+   +   +   + E + +
Sbjct: 991  PGTAQRPNPVTFYGIVISSTERTSKNDGSKFYILILDDGTSQLEFSLY 1038


>gi|270308619|ref|YP_003330677.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. VS]
 gi|270154511|gb|ACZ62349.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. VS]
          Length = 1170

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/1025 (37%), Positives = 585/1025 (57%), Gaps = 53/1025 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ +SLL+G   ++ ++ +       A+AITD   +     F ++A  AGI+P+
Sbjct: 2    FCHLHVHTEFSLLDGMCRISQLVARAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +  +   D    T   K  +     +VLL    +GY  LI+L SR ++ +      R
Sbjct: 62   LGSEFYLAYGDRTAKTAADKNYY----HLVLLAKNNKGYHNLIQLSSRSHI-EGFYYKPR 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L++  +EGL+ L+   SG + R    N    A +  L +KK F +  Y+ +QRH 
Sbjct: 117  IDKELLEKY-SEGLVCLSACPSGEVPRLILENRFNEAREAALWYKKTF-ENYYIEIQRHP 174

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D  +  S ++ +A   ++PLVATN++ +L +ED   HD+L+ +  + +VS + R ++ 
Sbjct: 175  MPDLEKINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKME 234

Query: 250  PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKECDDIQK 305
             D+ YLK+  EM   + D+P+A+ENTV+IA  C+  L   ++H P +    +K  D+   
Sbjct: 235  GDYFYLKSPEEMAEAYQDIPDAIENTVKIAEMCNVSLDFGRLHLPEIDIPADKTPDEYLA 294

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGY--HAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +                L  G + K Y   +Q+   RL +EL+VI   +F+ YFL+  D 
Sbjct: 295  D----------------LCYGGLPKFYPDASQEILDRLKYELDVIKTTEFANYFLVTWDI 338

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++ K+  +  G  RGS A S+  Y L IT +DP+++ L+FERFLN +R  MPD D+DF 
Sbjct: 339  IRFVKEKGLYYGV-RGSAASSIVLYCLGITALDPIKYKLVFERFLNIERKEMPDIDMDFQ 397

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR+EVI YV  KYG + V+QIITFG+L AKAA+RD GRAL M Y+ VDR+ K+IP   
Sbjct: 398  DDRREEVIEYVVGKYGRDHVSQIITFGTLGAKAAVRDAGRALGMAYADVDRVAKVIPFS- 456

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             H    +A+ + +  ++    D  V  L++ ++K+EGL RHASTHAAG+VI   PL+  V
Sbjct: 457  LHMTLDKAMEESTELKDMFNQDSVVRNLVDAARKIEGLSRHASTHAAGVVISKDPLTDHV 516

Query: 544  PMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
            P+ R  + +   L +TQ+ M+ I K GL+K DFLGL  L +L K+   + +  G  +D  
Sbjct: 517  PLQRLSKENNLGLVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQDIDPL 576

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +T+ LL    T+G+FQLE +GMR+ ++ ++P    DI A+V+LYRPGP++ I 
Sbjct: 577  AIPLDDAKTFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIP 636

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +   K+G E I   HP + P+L+ET GVI+YQEQV+ IAQ  SGY+L +AD+LR+AMGK
Sbjct: 637  RFIKSKHGLEPITYPHPALAPILEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGK 696

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KI   M KQK  FI GA KNG +  IA  +F L+  FA Y FNK+HA +YA+I+YQTA++
Sbjct: 697  KIAAVMQKQKANFIDGALKNGYTPEIAEEVFALVEPFAGYAFNKAHATSYALIAYQTAYL 756

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----R 834
            K +YPVE++ A +    D  EK+     +AR   I+++PP +N   V+F++  N     +
Sbjct: 757  KANYPVEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGVNFEIEQNEDGVKK 816

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + LAA+K VG      I+ E  A+  + S+ED C R +   LN+RV+ESLV AGALD 
Sbjct: 817  IRFGLAAVKNVGVAAVEPIVAERKANGDYLSVEDLCRRAEGSSLNKRVMESLVKAGALDS 876

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE------N 947
             G  R  LL +L NI   AQ  +K + +    +F      F  +  +   S+E       
Sbjct: 877  LG-DRGTLLFNLPNILSLAQREQKLKDSNQTTMF----DLFGQQSPMPMPSLEMAESPVT 931

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +  + + E+ ++G + S HP   Y    +++      +    +    + +A MV S +  
Sbjct: 932  TREKLQWEKELVGIFISEHPFTPYASSAQEVTTALCGQIDEELHNQPVTVAGMVASVRVS 991

Query: 1008 KTRKG 1012
             TR+G
Sbjct: 992  ATREG 996


>gi|291520859|emb|CBK79152.1| DNA polymerase III catalytic subunit, DnaE type [Coprococcus catus
           GD/7]
          Length = 1156

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/988 (37%), Positives = 563/988 (56%), Gaps = 60/988 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL VH+ YSLL+G+  +  ++ ++      ++AITD   ++  ++F ++A   GI P+
Sbjct: 3   FTHLHVHTEYSLLDGSNKIKELIARVKELGMDSVAITDHGVMYGVIDFYKEAQKQGIHPV 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IGC++ +      +    G         +VLL     GY  L+++VS+ +  +      R
Sbjct: 63  IGCEVYV--APGSRFDKSGNMSSNRYHHLVLLAENDTGYHNLMKIVSKGFT-EGFYYKPR 119

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
           +    L+E   EG+I L+   +G I  A      Q A        ++FG D  Y+ LQ H
Sbjct: 120 VDKELLKEY-HEGIIALSACLAGEIPDALRKGLYQTALNAAQEMSEIFGEDHFYLELQDH 178

Query: 190 RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              D+   +Q +++LA    L LVATN+  +   ED +AHDVL+ +     V+  DR R 
Sbjct: 179 GIPDQKTVNQGLLRLAKDTGLELVATNDIHYTLAEDAQAHDVLLCIQTGKKVADTDRMRY 238

Query: 249 TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               +Y+K+  EM S+F    EA+ENT +IA RC   ++     LP F   E  D  +  
Sbjct: 239 EGGQYYVKSPEEMASLFPYAREAIENTHKIAMRCHVDIEFGHYKLPEFPVPEGYDSWEY- 297

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              L+     G   R  Q         +  ++R+ +ELN I  M F  YFLIV DFI +A
Sbjct: 298 ---LQKLVWDGFYERYPQAD-------EKLKERVSYELNTIKTMGFVDYFLIVWDFIHYA 347

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           K+++I VGPGRGS AGS+ +Y L IT +DP+R++LLFERFLNP+R++MPD D+DFC +RR
Sbjct: 348 KEHDIMVGPGRGSAAGSIVSYCLDITTLDPIRYNLLFERFLNPNRVTMPDIDVDFCFERR 407

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            EVI YV  KYG ERV QI+TFG++ A+  +RDVGR L +PY+  D + K+IPN+    +
Sbjct: 408 QEVIDYVVRKYGKERVVQIVTFGTMAARGVIRDVGRVLDLPYAICDSVAKMIPNELGITI 467

Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             +A+  +   ++    D S+  L++++++LEGL RH S HAAG+VI  + + + VP+ R
Sbjct: 468 D-KALKMNPELKKLYDGDDSIHNLIDMARRLEGLPRHTSMHAAGVVISPKAVDEFVPLSR 526

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDH 606
               D+  TQ+ M  +E+ GL+K DFLGL+TLT+++ ++  +   G   VD+  I ++D 
Sbjct: 527 GA-DDVITTQYTMTTLEELGLLKMDFLGLRTLTVIRNAVKLINADGRHHVDMHEIDYNDK 585

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             + ++ T  T GIFQLESSGM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 586 AVFDMIGTGKTDGIFQLESSGMKSFMKELKPHNLEDIIAGISLYRPGPMDFIPRYIKGKN 645

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
               I    P ++ +L+ T G I+YQEQVMQI   L+GY L  +D++RRAM KK  + M 
Sbjct: 646 EPASITYECPQLEEILEPTYGCIVYQEQVMQIVMKLAGYDLGRSDLVRRAMSKKKADVMA 705

Query: 727 KQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           K+++ F+ G  +        NGI +  A  IF+ +  FA Y FNKSHAAAY ++SYQTAW
Sbjct: 706 KERQYFVYGNDELGVPGCIANGIDEATANRIFDEMTDFAKYAFNKSHAAAYTIVSYQTAW 765

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
           +K +YPVEF+AA MT  +DN  K+ ++    RQ  I+I+PP +N     F V + RI Y 
Sbjct: 766 LKYYYPVEFMAALMTSVIDNSVKVAEYIMTCRQMGIKILPPDINHGVSSFSVDNGRILYG 825

Query: 839 LAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L+A+K +G      I  E +   PF SL++F  R+  K++N+R +E+ + AGA D FG +
Sbjct: 826 LSAVKSIGRPVVAAIEQERTLAGPFTSLKNFIERMSGKEVNKRSIENFIKAGAFDSFGAT 885

Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS----SVRFE 953
           R Q       +  YAQ +++   ++ +NI        S ++TL  F  E       +R+ 
Sbjct: 886 RRQ------QMMVYAQIMDQVAQDRKKNI--------SGQMTLFDFMDEEEKQAFEIRYP 931

Query: 954 N------------EQRVLGFYFSGHPLD 969
           N            E+ VLG Y SGHPLD
Sbjct: 932 NVGEYDKGTLLSFEKEVLGVYISGHPLD 959


>gi|210135627|ref|YP_002302066.1| DNA polymerase III subunit alpha [Helicobacter pylori P12]
 gi|210133595|gb|ACJ08586.1| DNA polymerase III alpha-subunit [Helicobacter pylori P12]
          Length = 1211

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/1039 (37%), Positives = 595/1039 (57%), Gaps = 73/1039 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL  + + K  F     + L     EGY+ L+  +S M  L+ 
Sbjct: 61   EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A++    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D R+ + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 288  HAPILPRF-----IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
            + P  P F       K      +++ +   +KA  GL+ RL    + K  H Q Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAKNEGLSFEDDASYFAHKAREGLKERLI--LVPKEKHEQ-YKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+ MPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVGMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL--------- 512
            R L MPY + D   KLIPN     ++L+    +  F E A   +P +  L+         
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNDTARQV 528

Query: 513  -EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
             E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIK
Sbjct: 529  WEYSLNLENLNRNAGVHAAALVVDSQKELWYKTPLFASEKTGGIVTQYSMKYLEPVDLIK 588

Query: 571  FDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
            FDFLGLKTLT++  +L  +  Q  + VD   +  +D + Y  + +  T+GIFQ+E SGM 
Sbjct: 589  FDFLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMNDPKVYKTIQSGDTVGIFQIE-SGMF 647

Query: 630  QAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQ 686
            Q L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T 
Sbjct: 648  QGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTY 707

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A
Sbjct: 708  GTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKA 767

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
             N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E +  + 
Sbjct: 768  ANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVACYI 827

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEAS 857
             + R   I++MPP +N+   DF V          + +I + L A+KGVG    ++I+E  
Sbjct: 828  DEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEER 887

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
            A   + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +   K
Sbjct: 888  AKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--AK 945

Query: 918  NRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVY 971
            ++ N+      ++F   +G   +++ L+   +   ++    E E   LG + SG+PLD +
Sbjct: 946  DKANEMMQGGNSLFGAMEGGVKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEF 1005

Query: 972  KPILRKMGIKGYEESVATI 990
            K       IKG++  V +I
Sbjct: 1006 KE-----EIKGFKNLVKSI 1019


>gi|268610019|ref|ZP_06143746.1| DNA polymerase III DnaE [Ruminococcus flavefaciens FD-1]
          Length = 1135

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/1045 (36%), Positives = 603/1045 (57%), Gaps = 52/1045 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL +H+ YSLL+GA  L  +++ I +  Q A+AITD  N++ A+EF  +A  AGI
Sbjct: 3    SSDFVHLHLHTEYSLLDGACRLKPLMEHIKSLGQTAVAITDHGNMYGAVEFWNEAKNAGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTP-FPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            +PIIGC++ +      + T   + P   + P  ++LL    EGY+ L++LVS +  ++  
Sbjct: 63   KPIIGCEVYV-----ARRTRHDRDPKLDSSPYHLILLCKNNEGYKNLVKLVS-IASIEGF 116

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYV 184
                R+ L  L++   +GLI L+   +G I R    ++ + A+   +T+  +FG+   ++
Sbjct: 117  YNKPRVDLELLKKY-HDGLICLSACLAGEIPRLLNNSTYEEAKAVAMTYLDIFGEGNYFI 175

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +Q H    +R     + +L+    +PL ATN+  ++S++D E  +VL+ +    ++ + 
Sbjct: 176  EIQDHGIAAERKILPHLYRLSEETGIPLAATNDCHYISKDDAEMQNVLICIQTGKILGEP 235

Query: 244  DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +      D  Y+K+  EM  +F+   EAL+NT  IA  C+   +     LP+F  +   D
Sbjct: 236  NGMSFETDEFYVKSTEEMAELFAGHEEALKNTARIAEMCNVEFEFGNIKLPKFTVEGVTD 295

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 E   R+    G+  R  +   +K        +RL++EL+VI RM ++ YFLIV D
Sbjct: 296  ----NEAYFRDLCRKGMYERYGRSPDSK------VEERLEYELSVITRMGYTDYFLIVWD 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI++A+ +N+PVGPGRGSGAGS+ AY + IT IDP++F+LLFERFLNP+R+SMPDFDIDF
Sbjct: 346  FIRYARDHNVPVGPGRGSGAGSLCAYCIGITGIDPMKFNLLFERFLNPERVSMPDFDIDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + R  V  YV  KYG + V++II F +L+A+AA+RD GR + +PY+  D++ K I   
Sbjct: 406  CIEGRQSVKDYVVRKYGKDYVSEIIAFDTLKARAAVRDTGRVMSLPYALCDKVAKQI--- 462

Query: 483  PAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                  ++   DD+      LA     D SV +L++ ++KLEG+ RHASTHAAG+VI   
Sbjct: 463  -----DMRNTLDDALKESEELAQLYKSDRSVKKLIDTAKKLEGMPRHASTHAAGVVISAV 517

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            PLS LVP+ ++   D  VTQ+ M  +E  GL+K DFLGL+ LT+++ +++ + +     D
Sbjct: 518  PLSDLVPLQKN--DDTVVTQYTMTVLESLGLLKMDFLGLRNLTIIRDAVNEIRRSEPDFD 575

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  I F D   Y +L+   T G+FQ ES+GM   L  + P+ +ED+I ++SLYRPGP+ +
Sbjct: 576  IDKIDFADQNVYKMLSDGDTCGVFQFESAGMTARLMELCPERLEDLIVILSLYRPGPMKS 635

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I VY   K   + I   HP++  +L +T G ++YQEQVM+I + ++GYS   AD++RRAM
Sbjct: 636  IPVYIENKKHPDSIKYKHPILKDILADTYGCMVYQEQVMEICRKMAGYSYGHADIVRRAM 695

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             KK  + M K++E+F+SG+ +NG+S+T+A  +F+ +  FA Y FNKSHAAAYA ++YQTA
Sbjct: 696  AKKKHDVMLKEREKFVSGSVENGVSETVANEVFDEMVSFASYAFNKSHAAAYAYLAYQTA 755

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HY   ++AA M+  M + +K+ ++    R   I++  P VN     F   D  +Y+
Sbjct: 756  YLKYHYRGIYMAALMSSVMGSSDKLAEYINSCRDNGIKVCCPDVNKSFRGFTFKDGVMYF 815

Query: 838  SLAAIKGVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIK  G+  A + I++      F  L+DFC R++ ++LN++ LE+++ AGA D  G 
Sbjct: 816  GLLAIKNAGSGLADKLILDRQQHGDFKGLQDFCERIEGRELNKKALENMIKAGAFDGLGL 875

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGT-FSDKITLEKFSVENSSVR 951
            +R Q+L S +   + A   ++   +    +F    +HE G   S K   EK  +      
Sbjct: 876  NRRQMLDSYETFIEMAGEGKRGVIDGQLGLFRNEESHEMGVKISYKPEFEKKRL------ 929

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKM---GIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
            F  E+   G Y SG PLD YK I   M    + G       + G N++L   V S +   
Sbjct: 930  FAMEKEATGMYLSGDPLDSYKWISDLMHTDTVSGLSSPDTAVDGKNVKLLCTVESTKVHI 989

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T++G ++ +   S+     E   FP
Sbjct: 990  TKRGDKMCFAEVSDGTGVMECVVFP 1014


>gi|197303992|ref|ZP_03169024.1| hypothetical protein RUMLAC_02729 [Ruminococcus lactaris ATCC
           29176]
 gi|197296960|gb|EDY31528.1| hypothetical protein RUMLAC_02729 [Ruminococcus lactaris ATCC
           29176]
          Length = 1157

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/987 (37%), Positives = 574/987 (58%), Gaps = 38/987 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SF HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F ++A   GI P
Sbjct: 2   SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMYGVIDFYREARKQGINP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I+GC++ +    N +   +          +VLL    EGY+ L ++VS+ ++  +G    
Sbjct: 62  ILGCEVYV--APNSRFDREVTGGDDRYYHLVLLAENNEGYENLTKIVSKGFV--EGYYYK 117

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
                 L     +G+I L+   +G + R       + A+ R L ++++FG    ++ LQ 
Sbjct: 118 PRVDKELLRTYHKGIIALSACLAGEVPRYLTKGMYEEAKDRALEYQEIFGKGNYFLELQD 177

Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H   D+     Q+++L+    + LVATN+  +   +D +AHD+L+ +     +S ++R R
Sbjct: 178 HGIPDQQLVNQQLMKLSQETGIELVATNDVHYTYADDEKAHDILLCIQTGKKLSDENRMR 237

Query: 248 VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +Y+K+  EM ++F    +ALENT +IA RCS  ++     LP++   E       
Sbjct: 238 YEGGQYYVKSEEEMAALFPYARQALENTQKIADRCSVEIEFGVTKLPKYDVPEG----YT 293

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               L+     GL+ R           +Q+ + RL +EL+ I  M +  YFLIV DFI++
Sbjct: 294 SWEYLQKLCYEGLDQRYRT-------PSQELKDRLAYELDTIRHMGYVDYFLIVWDFIKY 346

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           AK + I VGPGRGS AGS+ +Y L IT IDP+ + LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347 AKDHGIAVGPGRGSAAGSIVSYCLGITTIDPIHYQLLFERFLNPERVSMPDIDVDFCYER 406

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R EVI YV  KYG + VAQI+TFG+L A+  +RDVGR + +PY+ VD + K+IP +    
Sbjct: 407 RQEVIDYVTRKYGKDCVAQIVTFGTLAARGVIRDVGRVMDLPYAYVDSIAKMIPQELGIT 466

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           +  +A+  +   R+   +D +V  L++++++LEGL RH S HAAG+VI  +P+ + VP+ 
Sbjct: 467 ID-KALQMNPELRKLYESDETVTHLIDMAKRLEGLPRHCSMHAAGVVICQKPVEEYVPLS 525

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
           R     +  TQF M  +E+ GL+K DFLGL+TLT++Q ++    ++   + +  I ++D 
Sbjct: 526 RAADGTI-TTQFIMTTLEELGLLKMDFLGLRTLTVIQNAVQLARKKQPDLQIDKIDYNDK 584

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
                + T  T GIFQLES GM+  ++ +QP  +ED+IA +SLYRPGP+D I  Y   KN
Sbjct: 585 AVLDYIGTGKTEGIFQLESGGMKNFMKELQPHSLEDVIAGISLYRPGPMDFIPQYIRGKN 644

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            +  I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK    M+
Sbjct: 645 DRSSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKAAVME 704

Query: 727 KQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           K+++ F        + G  KNGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTAW
Sbjct: 705 KERKTFVYGDEETGVPGCIKNGIDEQTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTAW 764

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
           +K +YPVE++AA MT  +DN  K+ ++    RQ  I+I+PP +N    DF V    I Y 
Sbjct: 765 LKYYYPVEYMAALMTSVIDNPTKVAEYIYVCRQMGIKILPPDINKGEADFSVDGGDIRYG 824

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKL-NRRVLESLVFAGALDCFGY 896
           LAAIK +G    R I+    +   F +LEDF +R+ S++L N+R++E+L+ AGALD  G 
Sbjct: 825 LAAIKSIGRPVIRAIVNDRKELGEFRNLEDFITRISSRELMNKRLVENLIKAGALDVLGG 884

Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKI-TLEKFSVENSSVR 951
           +R Q +     I  + Q  +KN      ++F      +K  F  ++  + +++ EN  + 
Sbjct: 885 TRKQFMSIYIQIVDHMQQEKKNSMVGQMSLFDMVSEEQKEEFQIRMPDVGEYTKEN-LLG 943

Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKM 978
           FE E  VLG Y SGHPL+ Y+   RK+
Sbjct: 944 FEKE--VLGVYVSGHPLESYEEEWRKV 968


>gi|297583642|ref|YP_003699422.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10]
 gi|297142099|gb|ADH98856.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10]
          Length = 1126

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/1041 (36%), Positives = 595/1041 (57%), Gaps = 62/1041 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++ HL VH+ +SLL   + ++++ ++ ++    A+A+TD NN++ A+ F +   A GI+P
Sbjct: 2    AYAHLHVHTEFSLLSSLIRIDDLTEQASSQGFTALAMTDLNNIYGAVSFYRACRARGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +L ++     +++       PT  S++L   +  GYQ L+ LV+ M    + +  V
Sbjct: 62   ILGVELSME-----RLSLNSGRDVPT--SLLLYAKSFRGYQSLVRLVT-MACAREAEPYV 113

Query: 130  RICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNL 186
                  + E+  EG  L++++  S G +         + A   L T + +FG+  +YV +
Sbjct: 114  T-----MDELEAEGEELVVISPFSEGRMQLLAEEGRDEEASAFLKTIRNVFGEEDVYVEI 168

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++R R  ++ +      +P+VATN+   L  + + A   L A+     + + D 
Sbjct: 169  QNHWLRWERERMQRIRKWLTNERVPVVATNHVHALEPDQFGALQTLQAIKDGVRIEEIDE 228

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                PD YLKN  EM   F+    AL+ T EI  +C   L +   ILP +   + +    
Sbjct: 229  SLRAPDMYLKNEEEMREQFAKWNTALDVTEEIVAKCEVELPLGGQILPSYPVSDGETAA- 287

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVADF 363
               + LRN    GL  R         YHA  + +R+RL+ EL VI  M +  YFLIVADF
Sbjct: 288  ---SLLRNWCEKGLYER---------YHAPEEKHRERLEKELQVIHDMGYEDYFLIVADF 335

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +A +N I  GPGRGS AGS+ AY L ITD+DP+ + LLFERFLNP+R+SMPD DIDF 
Sbjct: 336  MDYAHRNGILTGPGRGSAAGSLVAYLLRITDVDPILYDLLFERFLNPERVSMPDIDIDFS 395

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
               RD+VI YV  +YG  +VAQI+TFG+L AKAALRD  R L +P + VDRL KLIP  P
Sbjct: 396  DLDRDQVIHYVHERYGASKVAQIVTFGTLAAKAALRDTARVLGIPTADVDRLSKLIPARP 455

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++  A+ +   F +A    P  D LL+ +  +EG+ RH S HAAG+V+   PL+ +V
Sbjct: 456  NMTIT-AALEEAPAFNKAIREMPKGDLLLKTALDIEGIARHTSIHAAGVVMSKDPLTDIV 514

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602
            P+ +     L +TQF M  +E  GL+K DFLGL+ L+ +++  + + ++ G  +DL+ +P
Sbjct: 515  PL-QPSNDGLTITQFPMGDLEDLGLLKMDFLGLRNLSFMERIAETVKEKTGEALDLTRLP 573

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D   + LL    T GIFQLES GMR+ L+ ++P+  EDI+A+ +LYRPGP++ I +Y 
Sbjct: 574  LEDERMFALLGKGETNGIFQLESQGMRRVLKQLKPERFEDIVAVNALYRPGPMEQIPLYI 633

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RKNG+E +   H  +  +L  T GV+IYQEQ+MQIA  ++G+SL+EAD+LRRA+ KK K
Sbjct: 634  RRKNGEEPVTYPHEDLREILAPTYGVMIYQEQIMQIASKMAGFSLAEADMLRRAVSKKKK 693

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EE+++ +  F+ GA   G ++  A  ++EL+ +FA+YGFN+SHA AY++IS + AW+KT 
Sbjct: 694  EELERSRTLFVEGAVGRGYAEDEATRVYELIERFANYGFNRSHAVAYSMISCRLAWLKTV 753

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            +P  F+AA M   +   +K+ ++  +A+Q  +++  PSV      F V +  I  +L  I
Sbjct: 754  HPEAFMAALMEQSVHAPDKLVRYIAEAKQMGLRVSGPSVQRSSRRFTVNNGEIVMALQVI 813

Query: 843  KGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +  G   A  I+ A  ++ PF SL DFC RV  K ++R+ +ESL+ AGA+D FG  R  L
Sbjct: 814  RHTGHHAAAEIIRAREEEGPFGSLFDFCKRVSLKIVSRKTVESLIMAGAMDDFGVDRTSL 873

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
              SL++  ++      +   +  ++F  E+G   D     + ++ +   + + E+ V+GF
Sbjct: 874  FASLEDAFQFG-----DEDAEGFSLFEQEEGE-PDYRQGGRMTLMD---KLDEEREVMGF 924

Query: 962  YFSGHP-------LDVYK--PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            Y SGHP       L  YK   IL  MG+   + +V        RLA M+   +  +T+KG
Sbjct: 925  YLSGHPVEDDLELLKTYKRQSILEAMGVASEKMTV--------RLAGMIEHIRLIRTKKG 976

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
             ++ +V+ S+     +   FP
Sbjct: 977  DQMAFVSMSDETGAMDITVFP 997


>gi|256832318|ref|YP_003161045.1| DNA polymerase III, alpha subunit [Jonesia denitrificans DSM 20603]
 gi|256685849|gb|ACV08742.1| DNA polymerase III, alpha subunit [Jonesia denitrificans DSM 20603]
          Length = 1181

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/1068 (36%), Positives = 582/1068 (54%), Gaps = 65/1068 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YS+L+GA  L+++  + A   Q  IA TD   +F A EF  KA AAG++PI
Sbjct: 8    FVHLHVHTEYSMLDGAARLDDLFQETARLGQHTIATTDHGYIFGAYEFWSKARAAGVKPI 67

Query: 71   IGCQLDI-------DMQDNLKMTNQGK----TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IG +  +       D    L      +    +         L     EG   L  + S  
Sbjct: 68   IGVEAYLTPGTSRFDQTRRLWGEQSQREDDVSARGAYTHFTLWARNNEGLHNLFRMSSLA 127

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             L  Q  +  R+    LQ   +EGLI  +G  S  +           A +     +++FG
Sbjct: 128  SLEGQMGKWPRMDRELLQTY-SEGLIASSGCPSSEVQTRLRLGQFDEALRAAGEMQEIFG 186

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +  YV L  H    +    S+++++A     PLVATN+S ++  +D  + + L+ +   
Sbjct: 187  KENFYVELMDHGLSIENRVRSELLEVARKINAPLVATNDSHYVRRDDAASQEALLCINSG 246

Query: 238  TVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
            + +   DR +   D +Y+K+  EM  ++ D+PEA +NT+ IA +C       A  +P+F 
Sbjct: 247  STLLDPDRFKFDGDGYYIKSAQEMRDLWRDIPEACDNTLLIAEQCDVSFNTSANYMPKFP 306

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                +D    E +    +   GL  R  QG         D R +  FE+NVI +M F GY
Sbjct: 307  CPPGED----ETSWFIKEVERGLHARYPQGI------PDDVRAQAKFEINVITQMGFPGY 356

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPL+  L+FERFLNPDR+SMP
Sbjct: 357  FLVVADFINWAKNNGIRVGPGRGSGAGSMAAYAMRITDLDPLKHGLIFERFLNPDRVSMP 416

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DF + RR EVIRYV  KYG +RVAQI+T+G+++AK AL+D  R L  P++  ++L 
Sbjct: 417  DFDVDFDERRRGEVIRYVSEKYGEDRVAQIVTYGTIKAKQALKDSSRLLGFPFAMGEKLT 476

Query: 477  KLIPNDPA---HPVSLQAIAD--DSRFREA------RLADPSVDRLLEISQKLEGLYRHA 525
            K +P  PA     +SL  I D  D R+ EA         DP   R++E+++ +EGL R  
Sbjct: 477  KAMP--PAIMGKDISLTGIFDPQDKRYHEAEEFRQLHAGDPDAQRVVELAKGIEGLKRQW 534

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
              HAAG+++   PL  ++P+ R  +    +TQF+    E  GLIK DFLGL+ LT+L  +
Sbjct: 535  GVHAAGVIMSSDPLIDIIPIMRRPQDGAVITQFDYPTCETLGLIKMDFLGLRNLTILDDA 594

Query: 586  LDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            LD + Q   + V L  +  DD +TY LL    TLG+FQL+ +GMR  L  M+PD  EDI 
Sbjct: 595  LDNIVQNNKEPVILEDLLLDDRKTYELLARGETLGVFQLDGNGMRSLLRLMRPDNFEDIS 654

Query: 645  ALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQI 698
            A+ +LYRPGP+  ++   Y  RKNG++ +  IHP ++  L E    T G+I+YQEQVM I
Sbjct: 655  AVGALYRPGPMGANSHTNYALRKNGQQAVTPIHPELEEPLAEILGNTYGLIVYQEQVMAI 714

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ L+GYSL +AD+LRRAMGKK K E+DKQ E F  G    G S      ++++L  F+D
Sbjct: 715  AQKLAGYSLGQADILRRAMGKKKKSELDKQFEMFSQGMIDRGYSMQAVKTLWDILVPFSD 774

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            Y FNK+H+AAY V+SY TA++K +YP E++AA +T   D+ +K   +  + R+  I ++P
Sbjct: 775  YAFNKAHSAAYGVVSYWTAYLKANYPTEYMAALLTSVKDDKDKSALYLNECRRMGITVLP 834

Query: 819  PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKL 877
            P VN+   +F   D  I + L A++ VG      I+    DK  F S  DF  +V +   
Sbjct: 835  PDVNSSLANFAAVDRDIRFGLTAVRNVGGNVVDAIIATREDKGEFSSFTDFLDKVPAVVC 894

Query: 878  NRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAH---- 929
            N+R +ESL+ AGA D  G+ R  L     Q++D++      V++       ++FA     
Sbjct: 895  NKRTIESLIKAGAFDSLGHPRKALHIIHEQAVDSVIS----VKRKEAEGQFDLFAEFGSE 950

Query: 930  -EKG-TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK---MGIKGYE 984
             E+G +FS  + +     +   + FE E  +LG Y S HPL   + +L +   + I    
Sbjct: 951  PEEGMSFSVDVPMLDDWDKKQLLAFERE--MLGLYVSDHPLSGIEHVLTQASDLAIAKLL 1008

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   G+ + +A +V + Q+K +++G+     T  +     +  FF
Sbjct: 1009 ADEGRPDGSTVTIAGLVTTVQRKMSKQGNPWASATVEDLDGSIDVMFF 1056


>gi|297588670|ref|ZP_06947313.1| DNA-directed DNA polymerase III alpha subunit [Finegoldia magna ATCC
            53516]
 gi|297574043|gb|EFH92764.1| DNA-directed DNA polymerase III alpha subunit [Finegoldia magna ATCC
            53516]
          Length = 1161

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/1060 (35%), Positives = 596/1060 (56%), Gaps = 64/1060 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G   +  +LDK+   Q  +IAITD  ++F  ++F ++     I+P
Sbjct: 4    TFTHLHVHTEYSLLDGFSPIEKLLDKVEELQMKSIAITDHGSMFGTVKFYKECKKRNIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++    +D+ K+ N     +     +VLL     GY  L+++VS  Y+ +      
Sbjct: 64   IIGCEIYTTNKDH-KIKNPENKFYN---HLVLLAKNQTGYSNLMKIVSLGYV-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L++  +EG+I L+    G +  +        A+      K ++G+  Y+ LQ H
Sbjct: 119  RVDKDTLRKY-SEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNH 177

Query: 190  RGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                  RE  VV     ++A   ++ LV TN+  ++ +EDY+ H++L+ +     + +++
Sbjct: 178  SS----REDMVVMENIPKIANELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEEN 233

Query: 245  RPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            +    P + +L++  +M  +F D PEA+ENT +IA  C+  L+     LP F   +    
Sbjct: 234  KMSYIPGEFFLRSEEQMRDLFKDYPEAIENTKKIAEMCNVELEFGNLHLPYFAIPDG--- 290

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                 + L+     GLE R A          ++ ++R ++EL+VI +M +  YFLIV DF
Sbjct: 291  -FTNSSYLKKLVFDGLEKRFANDD-----RLEEAKERCEYELSVIEKMGYVDYFLIVWDF 344

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++AK  +IPVGPGRGS AGS+ +Y L ITDI+PL ++L+FERFLNP+R+SMPD DIDFC
Sbjct: 345  IRFAKSQDIPVGPGRGSAAGSIISYCLEITDINPLDYNLIFERFLNPERVSMPDIDIDFC 404

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EVI YV NKYG ++VAQI+TFG++ A+ A+RDVGR L M +  VD   K +PN  
Sbjct: 405  YERREEVIDYVVNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLL 464

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +++     FR+A   +  V +L+++++++EG+ RH STHAAG+VI   P+ + V
Sbjct: 465  NINID-KSLEISPEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYV 523

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+   +  D  +TQFNM  +E+ GL+K DFLGL+TLT++   + ++ ++   +D+S    
Sbjct: 524  PLA--INKDAVITQFNMTELEELGLLKMDFLGLRTLTVISDCMKYI-KKNKDIDVSFEDM 580

Query: 604  D--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            D  D +   + T   TLGIFQ ES GMR  L+ ++P   +D+IA  +L+RPGP++ I  Y
Sbjct: 581  DENDPKVLSMFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPMNEIPTY 640

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             + K+ +E +  + PL++ +LK T G I+YQEQVMQI Q ++G+SL EAD LRRAM KK 
Sbjct: 641  IHNKHNEEDVEYLSPLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKK 700

Query: 722  KEEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             + M+  ++ F            I GA + G+ + +A  I++L+  FA Y FNKSH+AAY
Sbjct: 701  MKVMEDGRKEFIFGKEDEDGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAY 760

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            ++++ +TAW+K +YPVEFLAA ++  M N  ++  + ++AR+ +I+I  P +N     F 
Sbjct: 761  SLVAMRTAWLKYYYPVEFLAALISSVMGNTSQLSLYIEEARRLDIKIEAPDINYSLDKFD 820

Query: 830  VGDNRIYYSLAAIKGVGTT-TARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESL 885
            V DN I Y L AIK VGT    + I+  + +  F S  DF  R+   D   +N+R +ESL
Sbjct: 821  VKDNSIIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESL 880

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLE 941
            + AGA    G +R  L+    +I    Q   KN      N+F    ++      D    E
Sbjct: 881  IKAGAFTSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNADDDRDDFTRRE 940

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK--------MGIKGYEESVATIRGN 993
            +F   + S     E+ VLG Y S HPL  Y  I+ K        +    Y E      G 
Sbjct: 941  EF---DKSELLRMEKEVLGIYLSDHPLRAYSNIIGKYSNFSTGDLEDDAYNEK--NFDGK 995

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +++  +V S  +K T+    + +V F +     E   FP
Sbjct: 996  RVKVVGIVESINKKFTKNQKIMEFVKFEDLYGTMELIVFP 1035


>gi|153853950|ref|ZP_01995283.1| hypothetical protein DORLON_01274 [Dorea longicatena DSM 13814]
 gi|149753332|gb|EDM63263.1| hypothetical protein DORLON_01274 [Dorea longicatena DSM 13814]
          Length = 1158

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1055 (36%), Positives = 587/1055 (55%), Gaps = 55/1055 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      ++AITD   ++  ++F + A AAGI+P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKECVARVKELGMNSVAITDHGVMYGVIDFYRAARAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G         +VLL     GY  L+++VSR +  +      
Sbjct: 62   ILGCEVYVAPGSRFDKEAVGSGD-DRYYHLVLLAENDLGYHNLMKIVSRGFT-EGYYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+ L  LQE   EG+I L+   +G + +       +  +   L ++ +FG    ++ LQ 
Sbjct: 120  RVDLEVLQEF-HEGIIALSACLAGEVQKNILRGMYEEGKAAALRYQDIFGKGNFFLELQD 178

Query: 189  HRGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            H      +E Q+V     +++    + LVATN+  +   ED + HD+L+ +     ++ +
Sbjct: 179  HG----MQEQQIVNQSLLRMSQETGIELVATNDVHYTYAEDVKPHDILLCIQTGKKLADE 234

Query: 244  DRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            DR R     +Y+K+  EM  +F    +ALENT +IA RC+  ++     LP++     D 
Sbjct: 235  DRMRYEGGQYYIKSEEEMKQLFPYALQALENTQKIADRCNVEIEFGVTKLPKY-----DV 289

Query: 303  IQKEEENELRNK-AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             +     E  NK    GL+ R   G           ++RL++EL+VI  M +  YFLIV 
Sbjct: 290  PEGYTSWEYLNKLCFDGLKERYPDGD-------DSLKERLEYELSVIKSMGYVDYFLIVW 342

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI +A+   I VGPGRGS AGS+ +Y L IT IDP+++ LLFERFLNP+R+SMPD D+D
Sbjct: 343  DFINYARTQGIKVGPGRGSAAGSIVSYCLGITSIDPIKYQLLFERFLNPERVSMPDIDVD 402

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR EVI YV  KYG +RV QI+TFG++ A+  +RDVGR + +PY+ VD + K++P 
Sbjct: 403  FCFERRQEVIDYVGRKYGADRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDSIAKMVPT 462

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +  +A+  +  F++    D  V  L+++S++LEGL RH S HAAG+VIG R + +
Sbjct: 463  ELNITLD-KALKMNPEFKKLYQEDEQVKELIDMSRRLEGLPRHTSMHAAGVVIGQRAIEE 521

Query: 542  LVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLS 599
             VP+   + SD  V TQF M  +E+ GL+K DFLGL+TLT++Q +    +   G  +D++
Sbjct: 522  FVPL--SLGSDGSVTTQFTMTTLEELGLLKMDFLGLRTLTVIQDAERLASISSGKTIDIN 579

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I +DD      + T  T G+FQLES+GM+  ++ ++P  +EDIIA +SLYRPGP+D I 
Sbjct: 580  KIDYDDKAVLASIGTGKTDGVFQLESAGMKNFMKELKPQNLEDIIAGISLYRPGPMDFIP 639

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y   KN  + I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM K
Sbjct: 640  QYIKGKNNPDSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSK 699

Query: 720  KIKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            K  + M K+++ F        + G   NGI +  A  I++ +  FA Y FNKSHAAAYAV
Sbjct: 700  KKGDVMQKERQNFVYGNPDEGVPGCIANGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAV 759

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQTAW+K +YPVEF+AA MT  +DN  K+ ++    RQ  I+I+PP +N     F V 
Sbjct: 760  VSYQTAWLKYYYPVEFMAALMTSVIDNPGKVSEYIYSCRQMGIKILPPDINKGEGSFSVD 819

Query: 832  DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I Y LAAIK +G      I+ E      F +L+DF  R+  K++N+R +ES + +GA
Sbjct: 820  GGNIRYGLAAIKSIGKPVIESIIQERKNGGEFSNLKDFIERLSGKEVNKRTIESFIKSGA 879

Query: 891  LDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             D  G +R Q +    Q LD + +  ++    + +  + +   +K  F   I L      
Sbjct: 880  FDSLGGTRKQFMVVYVQILDQVNRERKYSMTGQLSLFDIVSDDQKSEFD--IPLPDVGEY 937

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIRGNNIR--LA 998
                +   E+ VLG Y SGHPL+ Y+   +K      +  +  +E+  T   +  +  + 
Sbjct: 938  EKETKLAFEKEVLGVYLSGHPLEDYEEKWKKNISRTTLDFQIDDETGRTKVHDGAKEIVG 997

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             M+ +K  K T+    + ++T  +     E   FP
Sbjct: 998  GMITNKTIKYTKTNKVMAFITLEDLVGSVEVVIFP 1032


>gi|237802974|ref|YP_002888168.1| DNA polymerase III subunit alpha [Chlamydia trachomatis B/Jali20/OT]
 gi|231274208|emb|CAX11002.1| DNA polymerase III alpha subunit [Chlamydia trachomatis B/Jali20/OT]
          Length = 1237

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/1059 (36%), Positives = 585/1059 (55%), Gaps = 68/1059 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+N  + K    Q PA+A+TD  NLF A+EF +      I+P
Sbjct: 2    TWIPLHCHSQYSILDATCSINKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +          + K+       ++LL    EGY+ L  L S  Y   +G   V
Sbjct: 62   IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT--EGFYYV 117

Query: 130  -RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q 
Sbjct: 118  PRIDRDLLSQ-HSKGLICLSACLSGSVAQAAL-ESEEDLEKDLLWYQDLFQEDFFSEVQL 175

Query: 189  HRG----------------YDRYRESQV----VQLAYTHEL--PLVATNNSLFLSEEDYE 226
            H+                 Y ++ E Q+      LA +  L  P VATN+  +L+ +D+ 
Sbjct: 176  HKSSEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWL 235

Query: 227  AHDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
            AH++L+ V           ++ + + K +   + + Y K+   M  +F+  PE + NT  
Sbjct: 236  AHEILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQGMAELFAAHPETITNTCI 295

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA--------- 327
            +A RC   L       P ++ +         E E    + A LE    QG          
Sbjct: 296  VAERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELL 355

Query: 328  --IAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
              IAK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSG
Sbjct: 356  GHIAKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSG 415

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            AGSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G +
Sbjct: 416  AGSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKD 475

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
             VAQIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S  A+  D   R+ 
Sbjct: 476  NVAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELRQL 533

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
             + D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK
Sbjct: 534  YVDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMK 593

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620
             +E  G++K DFLGLKTLT +  +   + ++ G+ +  + IP DD  T+ LL    T+GI
Sbjct: 594  PVESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGI 653

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ+ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P
Sbjct: 654  FQMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEP 713

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NG
Sbjct: 714  ILKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANG 773

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            I  +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E
Sbjct: 774  IDPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIE 833

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SAD 859
            K+ K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    +
Sbjct: 834  KVGKLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKN 893

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P+ SL+DF  R D KK+ ++ LE+LV AG  DCF  ++   L  L+++       +K  
Sbjct: 894  GPYKSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEA 953

Query: 920  TNKHENIFAHEKGTFSD-KITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILR 976
                   F+ +       KIT+   +V   S +   + E+ +LG Y + HP+D  + +L 
Sbjct: 954  ATGVLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLP 1013

Query: 977  KMGIKGYEESVATIRGNNIR-------LAAMVVSKQQKK 1008
             + +    +      G  IR       +   + S +QKK
Sbjct: 1014 FLSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKK 1052


>gi|256372403|ref|YP_003110227.1| DNA polymerase III, alpha subunit [Acidimicrobium ferrooxidans DSM
            10331]
 gi|256008987|gb|ACU54554.1| DNA polymerase III, alpha subunit [Acidimicrobium ferrooxidans DSM
            10331]
          Length = 1189

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1084 (37%), Positives = 600/1084 (55%), Gaps = 81/1084 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  +N++L   AAD QPA+AITD  NL+ ALEF + A   G++P
Sbjct: 3    SFVHLHTHTEYSMLDGASRINDLLRAAAADGQPALAITDHGNLYGALEFYKAATRTGVRP 62

Query: 70   IIGCQLDID-------------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            IIG +  +              + D    + +G+  +     + LL     GY  LI+L 
Sbjct: 63   IIGLEAYMAGGSRFERPQRRGRLDDTGGESERGEKLYY---HLTLLAENETGYHNLIQLS 119

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            SR +L +      RI    L+E   EGLI LTG   G + +       + A     T ++
Sbjct: 120  SRAFL-EGYYYKPRIDFELLEE-HREGLIALTGCLGGLVLQHLLRGDEEGARTVAGTLRE 177

Query: 177  LFG-DRLYVNLQRHRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            + G D ++V LQ H   ++ R + Q+++LA    L  VATN+S +   ED+E HD L+ V
Sbjct: 178  ILGPDNVFVELQDHGLAEQRRTNPQLLELAKHLGLRTVATNDSHYTHREDHETHDALLCV 237

Query: 235  AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
                 ++ ++R R    +HYLK+  EM   F ++PEA + T++IA RCS  L    P LP
Sbjct: 238  QTGATINDQNRFRFEGSEHYLKSAEEMRERFREVPEACDATLDIAERCSLELTFGQPALP 297

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARM 351
                 E D   +        +A   L   + QGA A+  +  D    +R+ +EL+VI  M
Sbjct: 298  -----EIDIPVRITGATYDERAGEYLAELVWQGARARYGNDLDETTSERIRYELSVIESM 352

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+V D I+ A++ +I VGPGRGS AGSV AY L IT IDPL + L+FERFLNP 
Sbjct: 353  GFPGYFLVVWDLIRHAREAHIRVGPGRGSAAGSVVAYCLGITQIDPLAYDLIFERFLNPG 412

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R  MPD D+DF +  R E+IRY   +YGH+ VAQI+TF +++A+AA+RD  R L  PY+ 
Sbjct: 413  RKQMPDIDMDFDERYRGEMIRYAAERYGHDHVAQIVTFSTIKARAAVRDAARVLGYPYAV 472

Query: 472  VDRLCKLIPN---------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
             D++ K +P                 P H       A  +  RE   +DP V R++++++
Sbjct: 473  GDKIAKAMPPLVMGRDTPLAACLELTPGHE---DGYAQAAALREMVESDPDVARVVQVAK 529

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR-----SDLP-VTQFNMKWIEKAGLIK 570
             LEGL R    HAA +VI   PL++ +P+ R        S+ P VTQF M  +E+ GL+K
Sbjct: 530  GLEGLRRQDGIHAAAVVISRDPLTEYLPIQRKPDPGQDPSEAPIVTQFEMHGVEELGLLK 589

Query: 571  FDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             DFLGL+TL+++ ++++ + A RGV +D+  I  DD  T+ +L     +G+FQLE   MR
Sbjct: 590  MDFLGLRTLSVIDRAVELIRATRGVDLDIDAIALDDEATFAMLRAGDAIGVFQLEGGPMR 649

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            Q +  + P   ED+ ALV+LYRPGP+  +  V Y +RKNG++ +  +HP ++P+L++T G
Sbjct: 650  QLMRQLAPSRFEDVAALVALYRPGPMAANMHVDYADRKNGRKPVSYLHPDLEPVLRDTYG 709

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            ++IYQE +M++AQ ++GYSL EAD LR+A GKKI+  +  ++E+FI+G   +G    +  
Sbjct: 710  LMIYQESMMRVAQQIAGYSLEEADNLRKACGKKIRTLIAAEREKFIAGCVASGYGPELGT 769

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             +F+++  FADY FNKSHA  Y ++SYQTA++K ++PV+FLAA +T   D+ +K+  +  
Sbjct: 770  ALFDIIEPFADYAFNKSHAFGYGLVSYQTAYLKANFPVQFLAAILTSVRDDKDKLAVYLA 829

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDN----RIYYSLAAIKGVGTTTARHIM-EASADKPF 862
            DA   +I ++ P VN   VDF V       +I + LAA++ VG    R I+ E +   PF
Sbjct: 830  DAAAHHIAVLVPDVNASDVDFSVTSGPEGEQIRFGLAAVRNVGEGLVRSIIDERTRSGPF 889

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             S  DF  RVD+  LNRR LESL+ AGA D FG+ R  L ++L+   +      + R   
Sbjct: 890  TSFADFLLRVDASVLNRRTLESLIKAGAFDSFGHPRRALYEALEGALERVNERRRQRDRG 949

Query: 923  HENIFAH--EKGTFSDKITLEKFSVENSSVR-FENEQRVLGFYFSGHPL----------D 969
              ++F    E  +    + L+  SVE S+      E+ +LG Y S HP+          D
Sbjct: 950  LGSLFEEPSEDESVVPDLRLDIGSVEWSTPELLAFERDMLGLYVSAHPMHGVNVDRLGRD 1009

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            V  PIL  +          T  G  + +   + +  Q+ TRKG  +  +   +     E 
Sbjct: 1010 V-TPILDLI-------EADTPPGEPVTVVGAITALAQRTTRKGDLMATLRLEDLQAGIEV 1061

Query: 1030 NFFP 1033
              FP
Sbjct: 1062 MVFP 1065


>gi|227873299|ref|ZP_03991564.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
 gi|227840866|gb|EEJ51231.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
          Length = 1156

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/1061 (35%), Positives = 598/1061 (56%), Gaps = 68/1061 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VHSSYSLL+G+  +  ++ ++      +IA+TD   ++  ++F ++A   GI P
Sbjct: 2    AFTHLHVHSSYSLLDGSGKIPEMIARVKELGMDSIALTDHGVMYGVIDFYKEAKKQGIHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G ++ +      +   +G   +     +VLL     GY  L++LVS +   +      
Sbjct: 62   ILGSEIYLSRSMEERFIQKGGARYY---HLVLLAENDIGYHNLMKLVS-LGFTEGYYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+  + L++   EG+I L+   +G + R    +  + A++  L ++ +FG    ++ +Q 
Sbjct: 118  RVDYAVLEKY-HEGIIALSACLAGEVSRNLRLSQYEEAKQAALRYEGIFGKGNFFLEMQD 176

Query: 189  HRGYDRYRESQVVQ--LAYTHE---LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            H     Y E ++V   +   HE   +PLV TN+  +  +ED +AHD+L+ +     +  +
Sbjct: 177  HG----YAEQKLVNQGMLRLHEETGIPLVVTNDIHYTYKEDAKAHDILLCLQTGKKLMDE 232

Query: 244  DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            DR R      Y+K+  EM  +F    EALENT +IA+RC   +      LP++   E   
Sbjct: 233  DRMRYPGGQFYIKSEEEMEELFPYTKEALENTGKIAKRCQVNITFGEYHLPKYPVPEGHT 292

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                  + L    + GLE R        G   Q+ + RL +ELN I+ M F  YFL+V D
Sbjct: 293  AY----SYLEELCLKGLEKRY-------GESWQENKDRLYYELNTISDMGFVDYFLVVWD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I +AK + I VGPGRGS AGS+ AYA+ ITD+DP+   LLFERFLNP+R++MPD D+DF
Sbjct: 342  YIHFAKTHGIAVGPGRGSAAGSIVAYAIGITDVDPMEHQLLFERFLNPERVTMPDIDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR EVI YV  KYG E+V+QIITFG+L A+  +RDVGR L +PY++ D+L KL+PN+
Sbjct: 402  EYERRQEVIDYVGKKYGKEQVSQIITFGTLAARGVIRDVGRVLDIPYAKCDQLAKLVPNE 461

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A++     +     +    +++++  +LEGL RH+S HAAG+VI   P+S  
Sbjct: 462  LNMTLE-KALSVSKELKNLYDTEEETRQMIDMCLRLEGLPRHSSMHAAGVVIAGSPVSDY 520

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+ R     +  TQF M  IE+ GL+K DFLGL+TLT++Q +L F+ +  GVK+DL  +
Sbjct: 521  VPLSRGSDGSI-TTQFTMTTIEELGLLKMDFLGLRTLTVIQDALRFIEENHGVKLDLDKL 579

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P+DD + Y +L+     G+FQLES+GM   ++ +QP C++DIIA V+LYRPGP+D I  Y
Sbjct: 580  PYDDAKVYAMLSKGDCAGVFQLESAGMVNFMKRLQPSCLDDIIAGVALYRPGPMDFIPDY 639

Query: 662  NNRKNGKEKIVSIH---PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
                 GK+   ++H     ++ +LK T GVI+YQEQVMQI + L+G+++  +D+LRRAM 
Sbjct: 640  ---IAGKKNPATVHYDCKEMESILKNTYGVIVYQEQVMQIVRDLAGFTMGGSDLLRRAMS 696

Query: 719  KKIKEEMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            KK    M++ ++ F+ G +K         GIS+ +A  I++ +  FA Y FNKSHA +YA
Sbjct: 697  KKKTSVMEEARQSFVYGNAKEGIAGCISKGISEEVANRIYDKMIDFAKYAFNKSHAVSYA 756

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTA++K +Y  EF AA+M+  MDN  K  ++ + AR+  I+I+PP +    V F V
Sbjct: 757  LLSYQTAYLKYYYAPEFYAATMSSFMDNTVKTAEYIEVAREQGIEILPPDIQLAEVGFSV 816

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             + +I Y L+A+KGVG + A  I+    + PF + ED   R+  + +NRR +ES + AGA
Sbjct: 817  KEGKIRYGLSAVKGVGRSAAEQIILERKNGPFRNFEDLVQRLSQRGINRRAMESFIHAGA 876

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----------AHEKGTFSDKITL 940
             D    +R + L  L  + +  Q  +K++     ++              +  F D   L
Sbjct: 877  FDNLEGNRREKLVMLPEVLEDLQKGKKDQIAGQMSLLDLLGEEAEERQEFELIFPD---L 933

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM--------GIKGYEESVATIRG 992
            E+F     +    NE+  LG Y SGHPLD  + +L+++         ++  EE    +  
Sbjct: 934  EEFP---KAELLRNEKDALGVYLSGHPLDSDRALLKQLCSRRARDFSLEAIEEEKNLVDD 990

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +  +  M+    ++ T+K   + +VT  +     E   FP
Sbjct: 991  EHCTVGGMITGINRRITKKNDMMAFVTLEDNTGSMEVVVFP 1031


>gi|227500122|ref|ZP_03930193.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
 gi|227217837|gb|EEI83134.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
          Length = 1150

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/999 (37%), Positives = 584/999 (58%), Gaps = 73/999 (7%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           + +F HL VH+ YSLL+G   ++ +LD+       +IAITD  +++ A+EF ++A    I
Sbjct: 2   TGNFTHLHVHTEYSLLDGFSRIDLLLDRAKELGMESIAITDHGSMYGAIEFYKQAKKRDI 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           +PIIGC++ +  +D+    +  +  +     ++LL  + EGY+ LI++VS  Y+ +    
Sbjct: 62  KPIIGCEVYVSEKDHKIKDSTNRRYY----HLILLAKSKEGYKNLIKIVSEAYV-NGFYY 116

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNL 186
             R+   ++++   + +I L+   +G +++    N  + A+K  L +++ FG    ++ L
Sbjct: 117 KPRVSFDFIKKHAGD-IIALSACLNGEVNQKILENDYEGAKKAALNYEEAFGKGNYFLEL 175

Query: 187 QRHRGYDRYRESQVV--QLAYTHE---LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           Q H      +E  +V  +L   H+   +PLVATN+  ++++ED+   DVL+ +    ++ 
Sbjct: 176 QNHG----IKEESLVNAKLNRIHQETAIPLVATNDVHYVNKEDFYYQDVLLCIQTGKLIK 231

Query: 242 QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            +DR R+ + + YLK+  EM  IF+D  +AL NT  IA +C      H P LP F     
Sbjct: 232 DEDRMRMPSSEFYLKSYEEMEEIFADYEDALTNTKLIADQCKLEFTFHEPHLPYF----- 286

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               K EE  L N  +  L+  + QG I K G   ++ R R D E+NVI+ M +  YFLI
Sbjct: 287 ---SKVEEG-LSN--LEYLKKLVDQGLIKKYGKIDKEIRSRADMEINVISSMGYVDYFLI 340

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V DF+++A+ N+I VGPGRGS AGS+ +YAL IT IDP++++L+FERFLNP+R+SMPD D
Sbjct: 341 VWDFVRYARDNDIAVGPGRGSAAGSIVSYALDITQIDPIKYNLIFERFLNPERVSMPDID 400

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           IDF    RD V+ YV + YG + V+QIITFG +QA+ A+RDVGR L + Y++VD++ KLI
Sbjct: 401 IDFDYVLRDRVVDYVNDVYGRDHVSQIITFGRMQARNAIRDVGRVLDISYAKVDKIAKLI 460

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
           P+     +  +A    S+F+E   +D    RL++ ++KLEGL RH S HAAG+VI    L
Sbjct: 461 PSTLGMTID-KAFEASSKFKEIYESDLEGKRLIDTARKLEGLPRHTSIHAAGVVISKEAL 519

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDL 598
           + ++P+   + +D  VTQF+M  IE+ GL+K DFLGL+ LT+++ ++ D    RG+ VDL
Sbjct: 520 TDIIPLA--LSNDQLVTQFDMTEIEELGLLKMDFLGLRNLTVIKNTIKDVKKNRGIDVDL 577

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             I  +D +         T+GIFQ ES+GMR  L+ ++P   +D+IA  SL+RPGP+D I
Sbjct: 578 GKIDVNDKKVIEQFNKAKTIGIFQFESAGMRNFLKNLRPTVFDDLIAANSLFRPGPMDEI 637

Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             Y + KN  + +  I P + P+L  T G+I+YQEQVMQI Q L+GYSL EAD LRRAM 
Sbjct: 638 PKYIHNKNNPKDVSFITPALKPILDVTYGIIVYQEQVMQIVQKLAGYSLGEADNLRRAMS 697

Query: 719 KKIKEEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
           KK    M++ +E F            I+G  +NG+ +  A  I++ +  FA Y FNKSH+
Sbjct: 698 KKKMAVMEENREIFIHGRLDEKGEVEIAGCVRNGVDELSANQIYDEMISFAKYAFNKSHS 757

Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
           AAY++++ QTA++K +YP E++A  ++  MD   K+  +  + +   I+++PP VN    
Sbjct: 758 AAYSLVAVQTAYLKHYYPEEYMANLISSVMDQSTKLYLYVNETKALGIEVLPPDVNKSLA 817

Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK--PFDSLEDFCSRVDS---KKLNRRV 881
           +F+V + RI + L+AIK +G      I+ A  DK   F++ +DF  RVD    + LN++ 
Sbjct: 818 EFRVEEGRIIFGLSAIKNLGINMISAIVRAR-DKGGKFENFKDFLQRVDEVDQRALNKKG 876

Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
           +ESL+ AGA D  GY+R  L+             EK   +  EN   + KG  +      
Sbjct: 877 IESLIKAGAFDRMGYNRSSLM----------AIYEKAMASVSENRKVNLKGQLNLLDDFS 926

Query: 942 KFSVENSSVRFEN------------EQRVLGFYFSGHPL 968
             S ++  V+ +N            E+ VLGFY S HPL
Sbjct: 927 SVSKKSDDVKIQNINEYPKKTKLKLEKEVLGFYISDHPL 965


>gi|325478762|gb|EGC81873.1| putative DNA polymerase III subunit alpha [Anaerococcus prevotii
            ACS-065-V-Col13]
          Length = 1150

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1077 (35%), Positives = 595/1077 (55%), Gaps = 98/1077 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G   +N +LDK       +IAITD   ++ A+EF ++A A GI+PI
Sbjct: 5    FTHLHVHTEYSLLDGFSRINVLLDKCKELGMNSIAITDHGEMYGAIEFYKQAVARGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +   D+       +  +     ++LL    +GY+ LI++VS  Y+ +      R
Sbjct: 65   IGCEVYVSENDHTIKEPNNRRYY----HLILLAKNNDGYKNLIKIVSEAYV-NGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
            +   ++++     L+ L+   +G + +       + A++  + ++  FG    ++ LQ H
Sbjct: 120  VSFDYIKK-HANNLVALSACLNGEVSQRLIEGDYEAAKETAIKYESTFGKGNYFLELQNH 178

Query: 190  ---------RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     RG D+              +PLVATN+  ++++ED    DVL  +    +V
Sbjct: 179  GIKEQNTVNRGLDKIHRDL--------NIPLVATNDIHYVNKEDAYYQDVLQCIQTGKLV 230

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
              +DR ++ + + YLK+  EM  +FS    A+ENT  I+  C+     H P LP F    
Sbjct: 231  KDEDRMKMPSNEFYLKSYDEMNELFSSYEGAIENTQVISDMCNVSFTFHEPHLPYF---- 286

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFL 358
                 K EE   + + +  L   + QG + K G   +D R+R + E+N+I  M +  YFL
Sbjct: 287  ----SKVEEGLTKLQYLKKL---VDQGLVQKYGVITEDIRKRSEMEINIIHNMGYVDYFL 339

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DF+++A+ ++I VGPGRGS AGS+ +YAL IT IDP+++ LLFERFLNP+R+SMPD 
Sbjct: 340  IVWDFVRYARDHDIAVGPGRGSAAGSIVSYALDITQIDPIKYDLLFERFLNPERVSMPDI 399

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDF    RD+V+ YV + YG + V+QI+TFG +QA+ A+RDVGR L + Y++VD++ KL
Sbjct: 400  DIDFDYVLRDKVVDYVNDLYGRDHVSQIVTFGRMQARNAIRDVGRVLDISYAKVDKIAKL 459

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP      +  +A     +F+E   +D    RL++ ++K+EGL RH S HAAG+VI   P
Sbjct: 460  IPTTIGMTID-KAFDASPKFKEMYDSDVESKRLIDTARKVEGLPRHTSIHAAGVVISKDP 518

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVD 597
            L+ ++P+   + +DL VTQF+M  IE+ GL+K DFLGL+ LT+++ ++ D    RG++VD
Sbjct: 519  LTDIIPLA--LSNDLVVTQFDMTEIEELGLLKMDFLGLRNLTVIKNTIKDVRKNRGIEVD 576

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            LS I  +D           T+GIFQ ES GMR  L+ ++P   +D+IA  SL+RPGP+D 
Sbjct: 577  LSKIDVNDKNVIDQFNKARTIGIFQFESPGMRNFLKNLKPTVFDDLIAANSLFRPGPMDE 636

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y + KN  + +  I P + P+L  T G+I+YQEQVMQI Q L+GYSL EAD LRRAM
Sbjct: 637  IPNYIHNKNNPKDVKFIDPALRPILDVTYGIIVYQEQVMQIVQQLAGYSLGEADNLRRAM 696

Query: 718  GKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSH 765
             KK    M+  ++ FI             G  +NG+++  A  I++ +  FA Y FNKSH
Sbjct: 697  SKKKMSVMEANRDIFIHGKVDSDGNIEIPGCIRNGVNEKAANQIYDEMISFAKYAFNKSH 756

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY++++ QTA++K +YP E++A  ++  MD+  K+  +  +++   I+++PP VN   
Sbjct: 757  SAAYSLVAVQTAYLKHYYPEEYMANLISSVMDSSSKLYLYVNESKSLGIEVLPPDVNKSL 816

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRV---DSKKLNRRV 881
             +F V + +I + L+ IK VG  T + I+ +   D  F   +DF  R+   DS+ LN++ 
Sbjct: 817  AEFTVEEGKIIFGLSGIKNVGVNTIKSIVASRKKDGSFIDFDDFLQRIYEFDSRSLNKKA 876

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------ 935
            +ESL+ AGA D  G++R  L+         A + EK     HEN   + KG         
Sbjct: 877  VESLIKAGAFDSLGHNRASLM---------AHY-EKAMDAVHENRKVNVKGQIDMFGGFT 926

Query: 936  ------DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
                   K   +     N   + + E+ VLGFY S HPL  YK +L K      E + +T
Sbjct: 927  ENKEKKTKTKYDNIKEYNKKTKLKLEKEVLGFYISDHPLSEYKDVLDK------EVNFST 980

Query: 990  IRGNN-------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +N             + +A ++  K +  T+KG  + + +  +     E   FP
Sbjct: 981  DYRDNMNDFQIQKLDRKFVTMAGVITEKSEIMTKKGQLMSFASLEDMYGTIEIVIFP 1037


>gi|258512318|ref|YP_003185752.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257479044|gb|ACV59363.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 992

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/897 (40%), Positives = 540/897 (60%), Gaps = 46/897 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL VHS++S  E  L + +I+    A + PA+AITDTN ++ AL F + A A GI PI
Sbjct: 3   FVHLHVHSAFSFRESLLRVEDIVRAAKACEMPAVAITDTNAMYGALSFYRLARAEGISPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129
           +G Q+ + + +      +      TV   V+L    EGY+RL  L +      + K+ V 
Sbjct: 63  LGMQVSLAVGEEEAAPGRAAEWLDTV---VVLAMGMEGYRRLTRLATSA----RWKRPVP 115

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF---NSSQVAEKRLLTFKKLFG-DRLYVN 185
            + L  L E  ++GL++L GG   P  R F F     ++ AE+RLL         +L+V 
Sbjct: 116 HVTLRELAE-SSDGLVVLCGG---PESRLFDFLARGEAEAAERRLLQVAGAVPVGQLFVE 171

Query: 186 LQRHRGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
           +Q H G  R RE    ++QLA  +++PLVAT++  +L+ ED   H     +A +    + 
Sbjct: 172 VQDH-GLRREREGLPSLIQLAKRYDVPLVATHDVRYLAREDASWHRAYAQLARADAAERF 230

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---C 300
                T + +   ++EM   F++LPEAL  T EIA  C+  L +H   +PR+  K+    
Sbjct: 231 ----ATDEFHFATKAEMADRFANLPEALGRTAEIAEMCALDLPLHQVRMPRYATKDGRPA 286

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
           D++ +E       +    L   + +    +              L+VI RM ++ YFL+V
Sbjct: 287 DEVLREAARAGAARRYGALSPEVEERLERE--------------LDVICRMGYADYFLVV 332

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
           ADFI+ A +  I  GPGRGS AGS+ AYAL ITD+DP+R  LLFERFLNP R+S+PD D 
Sbjct: 333 ADFIRHAHQQGISTGPGRGSAAGSLVAYALRITDVDPIRHKLLFERFLNPARVSLPDIDT 392

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DF  +RR EVIRYV  KYG +RVAQI TFG+LQA+AALRD GR      + VDRL KL+P
Sbjct: 393 DFEFERRGEVIRYVIEKYGRDRVAQIGTFGTLQARAALRDAGRMTGADPALVDRLAKLVP 452

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
               H     A  + + FRE     P   RL E ++++E L  H S HAAG++I   P++
Sbjct: 453 G-VVHASLDGAYQESAAFRELVDGSPDARRLFEAAKRIEDLPHHTSIHAAGVIISPEPIA 511

Query: 541 QLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
             +P+  D+ +D  PVT + M+ +E  G +K DFLGLKTLTL+ + LD + +R GV +D 
Sbjct: 512 DWIPL--DLAADDTPVTAYPMEDVEALGFVKMDFLGLKTLTLIDRCLDSIRKRTGVTIDW 569

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             +   D  TY LLT   T G+FQLES+GMR+ L  ++P  ++D+IA++SL RPGP++NI
Sbjct: 570 RQVDEGDKATYALLTRADTNGVFQLESAGMRRVLRELRPTSLDDVIAVISLNRPGPMENI 629

Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             + + K+G+  +   HP ++P+L +T GVI+YQEQ+MQIA  ++G+SL+EAD+LRRA+ 
Sbjct: 630 PAFCDAKHGRRPVTYPHPDLEPILADTYGVIVYQEQIMQIASRMAGFSLAEADLLRRAVS 689

Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           KK +E +D+++ RF+ G  + G S+  A  +++L+ +FADYGFN+SHAAAYAV++++TA+
Sbjct: 690 KKKREILDEERARFVDGCVRRGYSEETAREVYDLIVRFADYGFNRSHAAAYAVLAFRTAY 749

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYY 837
           ++ H+  +FLAA +TL M   +KI+ + QDAR+  IQ+ PPSV      + V  D  +  
Sbjct: 750 LRAHFLPDFLAALLTLSMGAPDKIRLYEQDARRHGIQVRPPSVLRSERGYTVEEDGSLRA 809

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            L +I+ VG     HI+   ++KPF SL DF  R++ + +NR+ L+SL  AGALD F
Sbjct: 810 GLISIRNVGEAAVDHILSLRSEKPFASLVDFLRRIEPRIVNRKALDSLFAAGALDEF 866


>gi|166154760|ref|YP_001654878.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 434/Bu]
 gi|166155635|ref|YP_001653890.1| DNA polymerase III subunit alpha [Chlamydia trachomatis
            L2b/UCH-1/proctitis]
 gi|301336034|ref|ZP_07224278.1| DNA polymerase III subunit alpha [Chlamydia trachomatis L2tet1]
 gi|165930748|emb|CAP04245.1| DNA polymerase III alpha subunit [Chlamydia trachomatis 434/Bu]
 gi|165931623|emb|CAP07199.1| DNA polymerase III alpha subunit [Chlamydia trachomatis
            L2b/UCH-1/proctitis]
          Length = 1237

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/1059 (36%), Positives = 585/1059 (55%), Gaps = 68/1059 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+   + K    Q PA+A+TD  NLF A+EF +      I+P
Sbjct: 2    TWIPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +          + K+       ++LL    EGY+ L  L S  Y   +G   V
Sbjct: 62   IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT--EGFYYV 117

Query: 130  -RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q 
Sbjct: 118  PRIDRDLLSQ-HSKGLICLSACLSGSVAQAAL-ESEEDLEKDLLWYQDLFQEDFFSEVQL 175

Query: 189  HRG----------------YDRYRESQV----VQLAYTHEL--PLVATNNSLFLSEEDYE 226
            H+                 Y ++ E Q+      LA +  L  P VATN+  +L+ +D+ 
Sbjct: 176  HKSSEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWL 235

Query: 227  AHDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
            AH+VL+ V           ++ + + K +   + + Y K+  EM  +F+  PE + NT  
Sbjct: 236  AHEVLLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEMAELFAAHPETITNTCI 295

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA--------- 327
            +A RC   L       P ++ +         E E    + A LE    QG          
Sbjct: 296  VAERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELL 355

Query: 328  --IAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
              IAK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSG
Sbjct: 356  GHIAKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSG 415

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            AGSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G +
Sbjct: 416  AGSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKD 475

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
             VAQIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S  A+  D   ++ 
Sbjct: 476  NVAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELKQL 533

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
             + D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK
Sbjct: 534  YVDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMK 593

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620
             +E  G++K DFLGLKTLT +  +   + ++ G+ +  + IP DD  T+ LL    T+GI
Sbjct: 594  PVESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGI 653

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ+ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P
Sbjct: 654  FQMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEP 713

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NG
Sbjct: 714  ILKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANG 773

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            I  +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E
Sbjct: 774  IDPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIE 833

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SAD 859
            K+ K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    +
Sbjct: 834  KVGKLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKN 893

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P+ SL+DF  R D KK+ ++ LE+LV AG  DCF  ++   L  L+++       +K  
Sbjct: 894  GPYKSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEA 953

Query: 920  TNKHENIFAHEKGTFSD-KITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILR 976
                   F+ +       KIT+   +V   S +   + E+ +LG Y + HP+D  + +L 
Sbjct: 954  ATGVLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLP 1013

Query: 977  KMGIKGYEESVATIRGNNIR-------LAAMVVSKQQKK 1008
             + +    +      G  IR       +   + S +QKK
Sbjct: 1014 FLSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKK 1052


>gi|57233855|ref|YP_182167.1| DNA polymerase III, alpha subunit [Dehalococcoides ethenogenes 195]
 gi|57224303|gb|AAW39360.1| DNA polymerase III, alpha subunit [Dehalococcoides ethenogenes 195]
          Length = 1170

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 386/1024 (37%), Positives = 582/1024 (56%), Gaps = 51/1024 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ +SLL+G   ++ ++ +       A+AITD   +     F ++A  AGI+PI
Sbjct: 2    FCHLHVHTEFSLLDGMCRISQLVARAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +  +   D    T   K  +     +VLL    +GY  LI+L SR ++ +      R
Sbjct: 62   LGSEFYLAYGDRTAKTAADKNYY----HLVLLAKNNKGYHNLIQLSSRSHI-EGFYYKPR 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L++  +EGL+ L+   SG + R    N    A +  L +KK F +  Y+ +QRH 
Sbjct: 117  IDKELLEKY-SEGLVCLSACPSGEVPRLILENRFDEAREAALWYKKTF-ENYYIEIQRHP 174

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D  +  S ++ +A   ++PLVATN++ +L +ED   HD+L+ +  + +VS + R ++ 
Sbjct: 175  MPDLEKINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKME 234

Query: 250  PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--KE 306
             D+ YLK+  EM   + D+P+A+ENT +IA  C+  L      LP        DI   K 
Sbjct: 235  GDYFYLKSPEEMAEAYQDIPDAIENTAKIAEMCNVSLDFGRLHLPEI------DIPAGKT 288

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGY--HAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             +  L +    GL          K Y   +Q+   RL +EL+VI   +F+ YFL+  D I
Sbjct: 289  PDEYLADLCYEGL---------PKFYPDASQEILDRLKYELDVIKTTEFANYFLVTWDII 339

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++ K+  +  G  RGS A S+  Y L IT +DP+++ L+FERFLN +R  MPD D+DF  
Sbjct: 340  RFVKEKGLYYGV-RGSAASSIVLYCLGITALDPIKYKLVFERFLNIERKEMPDIDMDFQD 398

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVI YV  KYG + V+QIITFG+L AKAA+RD GRAL M Y+ VDR+ K+IP    
Sbjct: 399  DRREEVIEYVVGKYGRDHVSQIITFGTLGAKAAVRDAGRALGMAYADVDRVAKVIPFS-L 457

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            H    +A+ + +  ++    D  V  L++ ++K+EGL RHASTHAAG+VI   PL+  VP
Sbjct: 458  HMTLDKAMEESTELKDMYNQDSVVRNLVDAARKIEGLSRHASTHAAGVVISKDPLTDHVP 517

Query: 545  MYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            + R  + +   L +TQ+ M+ I K GL+K DFLGL  L +L K+   + +  G  +D   
Sbjct: 518  LQRLSKENNLGLVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQDIDPLA 577

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD +T+ LL    T+G+FQLE +GMR+ ++ ++P    DI A+V+LYRPGP++ I  
Sbjct: 578  IPLDDVKTFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIPR 637

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K+G E I   HP ++P+L+ET GVI+YQEQV+ IAQ  SGY+L +AD+LR+AMGKK
Sbjct: 638  FIKSKHGLEPITYPHPALEPILEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKK 697

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I   M KQK  FI GA KNG +  IA  +F L+  FA Y FNK+HA +YA+I+YQTA++K
Sbjct: 698  IAAVMQKQKANFIDGALKNGYTPEIAEEVFALVEPFAGYAFNKAHATSYALIAYQTAYLK 757

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RI 835
             +YPVE++ A +    D  EK+     +AR   I+++PP +N   V+F++  N     +I
Sbjct: 758  ANYPVEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGVNFEIEQNEDGVKKI 817

Query: 836  YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + LAA+K VG      I+ E  A+  + S+ED C R +   LN+RV+ESLV AGALD  
Sbjct: 818  RFGLAAVKNVGVAAVEPIVAERKANGEYLSVEDLCRRAEGSSLNKRVMESLVKAGALDSL 877

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE------NS 948
            G  R  LL +L NI   AQ  +K + +    +F      F  +  +   S+E       +
Sbjct: 878  G-DRGTLLFNLPNILSLAQREQKLKDSNQTTMF----DLFGQQSPMPMPSLEMAESPVTT 932

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              + + E+ ++G + S HP   Y    +++      +    +    + +A MV S +   
Sbjct: 933  REKLQWEKELVGIFISEHPFTPYASAAQEVTTALCGQIDEELDNQPVTVAGMVASVRVSA 992

Query: 1009 TRKG 1012
            TR+G
Sbjct: 993  TREG 996


>gi|255348923|ref|ZP_05380930.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 70]
 gi|255503463|ref|ZP_05381853.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 70s]
 gi|255507141|ref|ZP_05382780.1| DNA polymerase III subunit alpha [Chlamydia trachomatis D(s)2923]
 gi|289525590|emb|CBJ15068.1| DNA polymerase III alpha subunit [Chlamydia trachomatis Sweden2]
 gi|296435150|gb|ADH17328.1| DNA polymerase III subunit alpha [Chlamydia trachomatis E/150]
 gi|296438870|gb|ADH21023.1| DNA polymerase III subunit alpha [Chlamydia trachomatis E/11023]
          Length = 1237

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 387/1059 (36%), Positives = 585/1059 (55%), Gaps = 68/1059 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+   + K    Q PA+A+TD  NLF A+EF +      I+P
Sbjct: 2    TWIPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +          + K+       ++LL    EGY+ L  L S  Y   +G   V
Sbjct: 62   IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT--EGFYYV 117

Query: 130  -RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q 
Sbjct: 118  PRIDRDLLSQ-HSKGLICLSACLSGSVAQAAL-ESEEDLEKDLLWYQDLFQEDFFSEVQL 175

Query: 189  HRG----------------YDRYRESQV----VQLAYTHEL--PLVATNNSLFLSEEDYE 226
            H+                 Y ++ E Q+      LA +  L  P VATN+  +L+ +D+ 
Sbjct: 176  HKSSEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWL 235

Query: 227  AHDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
            AH++L+ V           ++ + + K +   + + Y K+  E+  +F+  PE + NT  
Sbjct: 236  AHEILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEIAELFAAHPETITNTCI 295

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA--------- 327
            +A RC   L       P ++ +         E E    + A LE    QG          
Sbjct: 296  VAERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELL 355

Query: 328  --IAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
              IAK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSG
Sbjct: 356  GHIAKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSG 415

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            AGSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G +
Sbjct: 416  AGSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKD 475

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
             VAQIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S  A+  D   R+ 
Sbjct: 476  NVAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELRQL 533

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
             + D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK
Sbjct: 534  YVDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMK 593

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620
             +E  G++K DFLGLKTLT +  +   + ++ G+ +  + IP DD  T+ LL    T+GI
Sbjct: 594  PVESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGI 653

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ+ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P
Sbjct: 654  FQMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEP 713

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NG
Sbjct: 714  ILKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANG 773

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            I  +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E
Sbjct: 774  IDPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIE 833

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SAD 859
            K+ K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    +
Sbjct: 834  KVGKLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKN 893

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P+ SL+DF  R D KK+ ++ LE+LV AG  DCF  ++   L  L+++       +K  
Sbjct: 894  GPYKSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEA 953

Query: 920  TNKHENIFAHEKGTFSD-KITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILR 976
                   F+ +       KIT+   +V   S +   + E+ +LG Y + HP+D  + +L 
Sbjct: 954  ATGVLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLP 1013

Query: 977  KMGIKGYEESVATIRGNNIR-------LAAMVVSKQQKK 1008
             + +    +      G  IR       +   + S +QKK
Sbjct: 1014 FLSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKK 1052


>gi|255311363|ref|ZP_05353933.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 6276]
 gi|255317664|ref|ZP_05358910.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 6276s]
          Length = 1237

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 387/1059 (36%), Positives = 585/1059 (55%), Gaps = 68/1059 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+   + K    Q PA+A+TD  NLF A+EF +      I+P
Sbjct: 2    TWIPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +          + K+       ++LL    EGY+ L  L S  Y   +G   V
Sbjct: 62   IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT--EGFYYV 117

Query: 130  -RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q 
Sbjct: 118  PRIDRDLLSQ-HSKGLICLSACLSGSVAQAAL-ESEEDLEKDLLWYQDLFQEDFFSEVQL 175

Query: 189  HRG----------------YDRYRESQV----VQLAYTHEL--PLVATNNSLFLSEEDYE 226
            H+                 Y ++ E Q+      LA +  L  P VATN+  +L+ +D+ 
Sbjct: 176  HKSSEEKVALFEETWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWL 235

Query: 227  AHDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
            AH++L+ V           ++ + + K +   + + Y K+  E+  +F+  PE + NT  
Sbjct: 236  AHEILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEIAELFAAHPETITNTCI 295

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA--------- 327
            +A RC   L       P ++ +         E E    + A LE    QG          
Sbjct: 296  VAERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELL 355

Query: 328  --IAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
              IAK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSG
Sbjct: 356  RHIAKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSG 415

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            AGSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G +
Sbjct: 416  AGSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKD 475

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
             VAQIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S  A+  D   R+ 
Sbjct: 476  NVAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELRQL 533

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
             + D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK
Sbjct: 534  YVDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMK 593

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620
             +E  G++K DFLGLKTLT +  +   + ++ G+ +  + IP DD  T+ LL    T+GI
Sbjct: 594  PVESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGI 653

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ+ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P
Sbjct: 654  FQMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEP 713

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NG
Sbjct: 714  ILKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANG 773

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            I  +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E
Sbjct: 774  IDPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIE 833

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SAD 859
            K+ K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    +
Sbjct: 834  KVGKLIQEAHSMNILVLPPDINESGQDFEATQKGIRFSLGAVKGVGMSIVDSIVEEREKN 893

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P+ SL+DF  R D KK+ ++ LE+LV AG  DCF  ++   L  L+++       +K  
Sbjct: 894  GPYKSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEA 953

Query: 920  TNKHENIFAHEKGTFSD-KITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILR 976
                   F+ +       KIT+   +V   S +   + E+ +LG Y + HP+D  + +L 
Sbjct: 954  ATGVLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLP 1013

Query: 977  KMGIKGYEESVATIRGNNIR-------LAAMVVSKQQKK 1008
             + +    +      G  IR       +   + S +QKK
Sbjct: 1014 FLSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKK 1052


>gi|15605274|ref|NP_220060.1| DNA polymerase III subunit alpha [Chlamydia trachomatis D/UW-3/CX]
 gi|14194664|sp|O84549|DPO3A_CHLTR RecName: Full=DNA polymerase III subunit alpha
 gi|3328984|gb|AAC68147.1| DNA Pol III Alpha [Chlamydia trachomatis D/UW-3/CX]
 gi|297748675|gb|ADI51221.1| DNA polymerase III alpha subunit [Chlamydia trachomatis D-EC]
 gi|297749555|gb|ADI52233.1| DNA polymerase III alpha subunit [Chlamydia trachomatis D-LC]
          Length = 1237

 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 387/1059 (36%), Positives = 585/1059 (55%), Gaps = 68/1059 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+   + K    Q PA+A+TD  NLF A+EF +      I+P
Sbjct: 2    TWIPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +          + K+       ++LL    EGY+ L  L S  Y   +G   V
Sbjct: 62   IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT--EGFYYV 117

Query: 130  -RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q 
Sbjct: 118  PRIDRDLLSQ-HSKGLICLSACLSGSVAQAAL-ESEEDLEKDLLWYQDLFQEDFFSEVQL 175

Query: 189  HRG----------------YDRYRESQV----VQLAYTHEL--PLVATNNSLFLSEEDYE 226
            H+                 Y ++ E Q+      LA +  L  P VATN+  +L+ +D+ 
Sbjct: 176  HKSSEEKVALFEETWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWL 235

Query: 227  AHDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
            AH++L+ V           ++ + + K +   + + Y K+  E+  +F+  PE + NT  
Sbjct: 236  AHEILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEIAELFAAHPETITNTCI 295

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA--------- 327
            +A RC   L       P ++ +         E E    + A LE    QG          
Sbjct: 296  VAERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELL 355

Query: 328  --IAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
              IAK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSG
Sbjct: 356  GHIAKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSG 415

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            AGSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G +
Sbjct: 416  AGSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKD 475

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
             VAQIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S  A+  D   R+ 
Sbjct: 476  NVAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELRQL 533

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
             + D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK
Sbjct: 534  YVDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMK 593

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620
             +E  G++K DFLGLKTLT +  +   + ++ G+ +  + IP DD  T+ LL    T+GI
Sbjct: 594  PVESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGI 653

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ+ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P
Sbjct: 654  FQMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEP 713

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NG
Sbjct: 714  ILKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANG 773

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            I  +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E
Sbjct: 774  IDPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIE 833

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SAD 859
            K+ K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    +
Sbjct: 834  KVGKLIQEAHSMNILVLPPDINESGQDFEATQKGIRFSLGAVKGVGMSIVDSIVEEREKN 893

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P+ SL+DF  R D KK+ ++ LE+LV AG  DCF  ++   L  L+++       +K  
Sbjct: 894  GPYKSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEA 953

Query: 920  TNKHENIFAHEKGTFSD-KITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILR 976
                   F+ +       KIT+   +V   S +   + E+ +LG Y + HP+D  + +L 
Sbjct: 954  ATGVLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLP 1013

Query: 977  KMGIKGYEESVATIRGNNIR-------LAAMVVSKQQKK 1008
             + +    +      G  IR       +   + S +QKK
Sbjct: 1014 FLSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKK 1052


>gi|300871757|ref|YP_003786630.1| DNA polymerase III subunit alpha [Brachyspira pilosicoli 95/1000]
 gi|300689458|gb|ADK32129.1| DNA polymerase III, alpha subunit [Brachyspira pilosicoli 95/1000]
          Length = 1208

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 365/984 (37%), Positives = 565/984 (57%), Gaps = 46/984 (4%)

Query: 16  VHSSYSLLEGALSLNNILDKIAADQQ--------------PAIAITDTNNLFSALEFSQK 61
           +H+ YS+L+GA  + ++  K+   ++              PAIA+TD  N+F A+EF  +
Sbjct: 1   MHTQYSILDGAARIKSLYSKVDKTKRLIPGLIDRAKELDMPAIAMTDHGNMFGAMEFFSE 60

Query: 62  ACAAGIQPIIGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
           A   GI PIIGC++ +  +     K+ N  +    +   +VLL    EGY  L +LV+  
Sbjct: 61  AKDKGIIPIIGCEVYVAPKTRFDKKLDNSEEK---SAMHLVLLAKDKEGYNNLCKLVTFG 117

Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
           Y   +G          L E   +GLI L+    G I  A      + A K    +K +FG
Sbjct: 118 YT--EGFYYRPRVDHELIEKYNKGLICLSACMGGEIPIAIRKKDYKQASKLAEYYKSIFG 175

Query: 180 DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
           +  Y+ LQ H    D+   S + +LA  H + LV TN+  ++S+ED +AH++L+A+    
Sbjct: 176 EDFYIELQDHGLAEDKTLNSALYKLANHHNIELVVTNDVHYVSKEDAKAHEILLAIQTKA 235

Query: 239 VVSQKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFI-LQVHAPILPRFI 296
            +    R +   + + LK   EM   F+ LP+A ENTV+IA +C  + +      +P + 
Sbjct: 236 TLDSPRRYKFPSNEFHLKTEEEMKKSFAKLPKAFENTVKIAEQCKDLNIMTKTYYMPNY- 294

Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKF 353
             E  +  + E   LR   + GL          K Y+    ++  +RLD EL VIA+M F
Sbjct: 295 --ELPN-GETETTALRKMCIEGLN---------KHYNNDIPKEAMERLDMELGVIAKMGF 342

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
            GYFL+V DFI +A+ +++ VGPGRGS AGS+ A+A  IT ++PL ++LLFERFLNP+R 
Sbjct: 343 EGYFLVVQDFINYARNHDVAVGPGRGSAAGSIVAFASGITKVNPLDYNLLFERFLNPERK 402

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
           SMPD D+DF  D+R+ VI YV NKYG + V+QI TFG+L  ++ +RDV R + +  +  D
Sbjct: 403 SMPDIDVDFQDDKREVVIDYVTNKYGKDNVSQIATFGALGGRSVIRDVCRVMGIDLATAD 462

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
           RL K IP+D    V +    D + FR+       +  + EIS +L+GL R+   HAAG++
Sbjct: 463 RLAKSIPDDIKRVVDIYDHPDCAEFRKEIDNSRELKNMYEISMRLDGLVRNVGLHAAGVI 522

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR- 592
           I   P++ L P+Y+D ++     Q+ M ++E AGLIK DFLG+K L L++ ++  + +R 
Sbjct: 523 ISSHPIADLAPVYQDSKTGTRACQYEMTYVESAGLIKMDFLGIKNLRLIKDAIKDIKERY 582

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
           G ++D+  IP DD   Y +     T G+FQ ES GMRQ L  +QP   +D+++ V+L+RP
Sbjct: 583 GKEIDIDKIPLDDEAVYKIFRHADTGGVFQFESPGMRQMLLNIQPTAFDDLVSSVALFRP 642

Query: 653 GPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           GP+ + +   Y +RKN +++IV  HP ++P+LKE+QGV+IYQEQ+M I++ + G++ +EA
Sbjct: 643 GPLKSGMDKDYADRKNKRKEIVYKHPDLEPILKESQGVLIYQEQIMAISRAIGGFTAAEA 702

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
           D LR+AMGKKI E+M+  +E+FISG  + G  + +   +F+ +  FA+YGFNKSH+  YA
Sbjct: 703 DDLRKAMGKKIVEKMNSMREKFISGGLERGYDEELLNYLFDTMKGFAEYGFNKSHSVCYA 762

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
           +I+YQ A++K HYP+E+  A +   + + +KI  +  + +Q NI+++  SV      F  
Sbjct: 763 LIAYQEAYIKAHYPMEYYVALLNTVIADTDKIALYLNEIKQKNIEVVTASVFESDALFSQ 822

Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            + +I Y+L A+KGVG   A  I E   +   F +LEDF  RVD   +NR+V E+L+  G
Sbjct: 823 KNGKIVYALHAVKGVGLQAALAIQEERENNGQFKNLEDFVKRVDVHLVNRKVYETLIKCG 882

Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVEN 947
           A   FG++   L+ SLD I  +A   +K   +    +F    E  T S  + +EK     
Sbjct: 883 AFSDFGHTESALISSLDAILAHASNYQKETLSGQTMLFDSMSEDDTGSASLVIEKQVEYA 942

Query: 948 SSVRFENEQRVLGFYFSGHPLDVY 971
           +++  ENE+ VLGF    HP   Y
Sbjct: 943 NNILMENEKEVLGFSLRYHPFARY 966


>gi|76789282|ref|YP_328368.1| DNA polymerase III subunit alpha [Chlamydia trachomatis A/HAR-13]
 gi|76167812|gb|AAX50820.1| DNA polymerase III alpha subunit [Chlamydia trachomatis A/HAR-13]
          Length = 1237

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 387/1059 (36%), Positives = 584/1059 (55%), Gaps = 68/1059 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+   + K    Q PA+A+TD  NLF A+EF +      I+P
Sbjct: 2    TWIPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +          + K+       ++LL    EGY+ L  L S  Y   +G   V
Sbjct: 62   IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT--EGFYYV 117

Query: 130  -RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q 
Sbjct: 118  PRIDRDLLSQ-HSKGLICLSACLSGSVAQAAL-ESEEDLEKDLLWYQDLFQEDFFSEVQL 175

Query: 189  HRG----------------YDRYRESQV----VQLAYTHEL--PLVATNNSLFLSEEDYE 226
            H+                 Y ++ E Q+      LA +  L  P VATN+  +L+ +D+ 
Sbjct: 176  HKSSEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWL 235

Query: 227  AHDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
            AH++L+ V           ++ + + K +   + + Y K+   M  +F+  PE + NT  
Sbjct: 236  AHEILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQGMAELFAAHPETITNTCI 295

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA--------- 327
            +A RC   L       P ++ +         E E    + A LE    QG          
Sbjct: 296  VAERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELL 355

Query: 328  --IAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
              IAK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSG
Sbjct: 356  GHIAKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSG 415

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            AGSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G +
Sbjct: 416  AGSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKD 475

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
             VAQIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S  A+  D   R+ 
Sbjct: 476  NVAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELRQL 533

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
             + D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK
Sbjct: 534  YVDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMK 593

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620
             +E  G++K DFLGLKTLT +  +   + ++ G+ +  + IP DD  T+ LL    T+GI
Sbjct: 594  PVESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGI 653

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ+ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P
Sbjct: 654  FQMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEP 713

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NG
Sbjct: 714  ILKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANG 773

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            I  +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E
Sbjct: 774  IDPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIE 833

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SAD 859
            K+ K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    +
Sbjct: 834  KVGKLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKN 893

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P+ SL+DF  R D KK+ ++ LE+LV AG  DCF  ++   L  L+++       +K  
Sbjct: 894  GPYKSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEA 953

Query: 920  TNKHENIFAHEKGTFSD-KITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILR 976
                   F+ +       KIT+   +V   S +   + E+ +LG Y + HP+D  + +L 
Sbjct: 954  ATGVLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLP 1013

Query: 977  KMGIKGYEESVATIRGNNIR-------LAAMVVSKQQKK 1008
             + +    +      G  IR       +   + S +QKK
Sbjct: 1014 FLSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKK 1052


>gi|325281577|ref|YP_004254119.1| DNA polymerase III, alpha subunit [Odoribacter splanchnicus DSM
            20712]
 gi|324313386|gb|ADY33939.1| DNA polymerase III, alpha subunit [Odoribacter splanchnicus DSM
            20712]
          Length = 1254

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 368/1097 (33%), Positives = 594/1097 (54%), Gaps = 80/1097 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F H  VHS YS+L+GA S+  +++K  AD Q A+A+TD  N+F    F       GI+PI
Sbjct: 3    FTHFHVHSQYSILDGAASIPGLIEKAKADGQTALALTDHGNMFGIKLFYDTCRQKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+  +     + + N+ K    +   +++L     GY  L++L S  +  D      R
Sbjct: 63   LGCEAYVA---RVSLYNKEKPIDRSGEHLIILAKNLTGYLNLVKLCSTAFC-DGFYYRPR 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I  + L++   EGLI+ +    G ID+       + AEK  L +K LFG+  Y+ + RH 
Sbjct: 119  IDKTQLEK-HHEGLIISSACLGGEIDQKIMAGDLEGAEKAALWYKNLFGEDYYLEVMRHP 177

Query: 191  GYDRYRESQV-----------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              D  + +++           +++A    + L+ATN+  FL+EED EAHD+L+ +     
Sbjct: 178  AADPKQRAEIYDNQQRCIQEKIKIARKLNIKLIATNDVHFLNEEDAEAHDLLICLNTRKD 237

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--- 296
            +    R R T   + K   EM+ +F DLPEA+ENT EI  +         P++P F    
Sbjct: 238  IDDPTRMRYTRQEWFKTTQEMIDLFPDLPEAIENTQEITDKVEEYELDSDPLMPVFPIPP 297

Query: 297  -----------------------EKECDDIQKEEENELRNKAVAG--------LEV---- 321
                                   +++ + +  EEE   + K + G        LE     
Sbjct: 298  ELGTEEEYRQKFSQEDLFNEFTRDEKGNVVLTEEEANKKIKKLGGYDRLYRIKLEADYLK 357

Query: 322  RLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
             L    + K Y    + +  +R+ FEL+++  M F GYFLIV DFI+ A+   + VGPGR
Sbjct: 358  ELTMKGVVKRYGENPSPEIMERIIFELHIMKTMGFPGYFLIVQDFIRAARDMGVIVGPGR 417

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GS AGS  AY L IT+IDP+++ LLFERFLNPDR+S+PD D+DF    R +V+ +V  KY
Sbjct: 418  GSAAGSAVAYCLGITNIDPIKYDLLFERFLNPDRISLPDIDVDFDDAGRQQVLEWVTEKY 477

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G ++V+ I+TFGS+ AK A++DV R L++  S+ +RL K++P  P   +      +    
Sbjct: 478  GADKVSHIVTFGSMAAKMAIKDVARVLKLELSEANRLAKMVPEAPKMTLKKAYKENPDLE 537

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
            +E +  +P + + ++ ++ LEG  R    HA GI+I   PL+  +P+       L  TQ+
Sbjct: 538  KEKQSLNPLISKTIQFAETLEGSIRQTGVHACGILISRDPLTDHIPIMPTEGESLMTTQY 597

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617
            +  ++E  GLIK DFLGL+TL++++  LD + + + + ++ + IP DD ET+ L T   T
Sbjct: 598  DGHFVEPIGLIKMDFLGLRTLSIIKTCLDNIKKSKHIVLNENEIPLDDEETFKLFTRGDT 657

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
             G+FQ ES GM++ L  +QP+  ED++A+ +LYRPGP++ I  +  RK+G+E I   HP+
Sbjct: 658  TGLFQFESPGMKKHLRALQPNRFEDLVAMNALYRPGPMEYIPSFIRRKHGEEPIEYDHPM 717

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++P LK+T G+ +YQEQVM  ++ L  ++  ++D LR+AMGKK  E + + K +F+ G  
Sbjct: 718  MEPYLKDTYGITVYQEQVMLQSRALGLFTRGQSDTLRKAMGKKKFELLAELKGKFVEGCK 777

Query: 738  KNGI----SKTIAVNIFELLAK-------FADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             N      +K    ++ EL+ K       FA Y FNKSH+  YA I+YQT ++K HYP E
Sbjct: 778  NNPDFVQGAKEKGKDVEELVNKIWGDWEAFASYAFNKSHSVCYAYIAYQTGFLKAHYPAE 837

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGV 845
            F+AA+++  + ++ K+  F  + ++  + ++ P VN    DF V  + +I + +AAIKGV
Sbjct: 838  FMAANLSNNLSDITKVTVFMDECKRMGLSVLAPDVNESYNDFTVNSHGQIRFGMAAIKGV 897

Query: 846  GTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ- 903
            G      I+E    + P+  + DF  R+D K +N++ +E+LV AG LD FGY R Q L  
Sbjct: 898  GEAAVEKIIEEREKNGPYKDVYDFFERIDYKSVNKKTIENLVTAGGLDSFGYHRAQYLHL 957

Query: 904  ------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
                   LDN+  Y Q  +++  N    +F    G    K  +      +   + + E+ 
Sbjct: 958  VDATTTVLDNLVNYGQKNQQDSMNLQATLFGELDGFEVTKPNIPDCEPWHDYEKSKKEKE 1017

Query: 958  VLGFYFSGHPLDVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            ++G Y + HPLD YK  ++ +   ++     + T +G  I +A ++ +K++ KT+ G   
Sbjct: 1018 LIGIYLTSHPLDPYKLEMQLLCTPVEELNSGLETFKGKEINIAGIITAKREGKTKTGKDF 1077

Query: 1016 GWVTFSEPAKEYEANFF 1032
            G +T  + +  YE  FF
Sbjct: 1078 GILTLEDFSGTYELAFF 1094


>gi|317129921|ref|YP_004096203.1| DNA polymerase III subunit alpha [Bacillus cellulosilyticus DSM 2522]
 gi|315474869|gb|ADU31472.1| DNA polymerase III, alpha subunit [Bacillus cellulosilyticus DSM
            2522]
          Length = 1128

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 369/1036 (35%), Positives = 599/1036 (57%), Gaps = 48/1036 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL     L  ++ +       A+AITD + ++  + F +      I+P
Sbjct: 2    SFVHLHVHSEYSLLRSTGKLEELVKQAKHLGYEALAITDIDAMYGVIPFYKACLKNNIKP 61

Query: 70   IIGCQLD-IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG +L  +  QD +K  +           ++ L    EGYQ LI L +R     Q K S
Sbjct: 62   IIGVELAYVKNQDEVKKDHH---------RLLFLAENNEGYQSLIRLTTRA----QEKSS 108

Query: 129  VRICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
                    +E+   + G+I ++  + G + +  +      A +     + +FG + +++ 
Sbjct: 109  SFGPYVTYEELQANSNGVIAISPFAEGLVQQYIYDKQDASALQHFEWLQSIFGKENVFLE 168

Query: 186  LQRH-RGYDRYRESQVVQLAYTHE--LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            LQ H R  +R +   +       E  + ++A+N+  F  +E ++AH  + ++     + +
Sbjct: 169  LQNHWRQEEREKLLAISNWLKGKEDAIRVIASNHIHFTHKEQHDAHRAIQSIRLGIKLDE 228

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                  + ++YLK+  EM  +F    EA  NT+ +A +C+  +++   ILP F       
Sbjct: 229  LPHDYSSSEYYLKSIDEMHHLFKKDGEASRNTLRVADKCNVKIELGNMILPHF------- 281

Query: 303  IQKEEENELRNKAVAGLEVR-LAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLI 359
                    L N+  A   +R L    I + Y   +++  +RLD+EL VI+ MK+  YFLI
Sbjct: 282  -------PLPNETTATEYLRELCYKGIQERYENPSEETWKRLDYELEVISEMKYEDYFLI 334

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADF+++A +  I  GPGRGS AGS+ AY L IT++DP+++ L+FERFLN +R+SMPD D
Sbjct: 335  VADFMRYAHEKKILTGPGRGSSAGSIVAYVLKITNVDPMKYGLIFERFLNRERISMPDID 394

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDF  +RRDEVIRYV+ KYG   VAQIITFG+L AKAA+RDVGR L +    +D++ K I
Sbjct: 395  IDFPDNRRDEVIRYVKEKYGRTHVAQIITFGTLAAKAAIRDVGRVLGIELPIIDKISKSI 454

Query: 480  PNDPAHPVSLQAIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P+ P   ++L+    +S   +  + ++  V  L  I++++EGL RH+S HAAGIV+   P
Sbjct: 455  PSRPN--ITLENALKESTVLQGMIESEEKVAELFTIAKEVEGLPRHSSIHAAGIVMSKEP 512

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597
            L+ +VP+ +    ++ +TQF M  IE  GL+K DFLGL+ L+ +++ L  +  Q+ + ++
Sbjct: 513  LTNVVPL-QIGNDEMYLTQFPMGDIEDIGLLKMDFLGLRNLSFIEQILKLIHNQQHIDIE 571

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ IPF D  T+ LL    T G+FQLES+GMR  L+ ++P   EDI+A+ +LYRPGP++N
Sbjct: 572  LNNIPFHDVNTFTLLGKGQTSGVFQLESTGMRSVLKRLKPTEFEDIVAVNALYRPGPMEN 631

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I VY  R + +EK+   HP ++ +L  T GV+IYQEQ+MQIA  ++G+SL EAD+LRRA+
Sbjct: 632  IPVYIRRLHKEEKVTYPHPSLEEILSPTYGVLIYQEQIMQIASKMAGFSLGEADILRRAV 691

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK ++ +++Q+++F+ G+   G  +  A  ++ L+ +FADYGF +SHA AY++I+Y  A
Sbjct: 692  GKKKRDVLEEQRQKFVQGSISKGYDEKEANEMYNLILRFADYGFPRSHAVAYSIIAYYLA 751

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +Y +EF+ A M   + + +K+ ++  +AR+  +++ PPS+      F + +  I+ 
Sbjct: 752  YLKANYQLEFMTALMGSVIHHHDKLGEYITEARRSGMKVHPPSIQQSEAQFSIKNKDIWI 811

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L AIK VG    + I+E  A   FDSL D C+R+ ++ L +R L++L+ AGALDC    
Sbjct: 812  GLHAIKNVGVQAVQAILEERAKSDFDSLFDLCARIPTRLLPKRALDALIVAGALDCIHDD 871

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R QLL S+D+  +Y + + +   N    +F  E     + +++   S   S  R   E++
Sbjct: 872  RAQLLASVDDAIEYGEKLREQEKNAQTELFIEEVKQ-PEYMSVPPLS---SKDRLNFEKQ 927

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            VLGFY SGHP++    ++   G     +  A  + + +R+A M+   +  KT+KG ++ +
Sbjct: 928  VLGFYASGHPIESELALVESFGRLSVID--AKEKKSTLRIAGMIEDVKVIKTKKGDQMAF 985

Query: 1018 VTFSEPAKEYEANFFP 1033
               S+   E +  FFP
Sbjct: 986  AQLSDETGEIDLTFFP 1001


>gi|326201799|ref|ZP_08191670.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
           2782]
 gi|325988399|gb|EGD49224.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
           2782]
          Length = 1158

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 373/989 (37%), Positives = 580/989 (58%), Gaps = 42/989 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +FVHL VH+ YSLL+GA  + +++ ++      +IAITD   ++  ++F ++A   GI+P
Sbjct: 3   NFVHLHVHTEYSLLDGANRIKDLIQRVKELGMDSIAITDHGVMYGVVDFYKEAVKNGIKP 62

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I+GC++    + N+K    G         +VLL     GY+ L+++VS +   +      
Sbjct: 63  ILGCEV-YTAKRNMKDKQPGIDS--NYGHLVLLAKNQIGYKNLMKIVS-LGFTEGYYYKP 118

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
           R+    L++  +EG+I L+   SG I  A   N  + A +      ++FG    Y+ LQ 
Sbjct: 119 RVDYETLEKY-SEGIIALSACLSGDIPSAILNNDYERAVELSNNLNRIFGQGNFYLELQ- 176

Query: 189 HRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
           H G         Q+++L+    +PLVATN++ +L++E+ ++H++L+ +     ++  +R 
Sbjct: 177 HNGISEQNLVNQQLIKLSGELGIPLVATNDAHYLTKENAKSHEILLCIQTGKTINDDNRM 236

Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           R   D  Y+K+  EM   F ++ +ALENTV+IA  C+  L+     LP F   E ++   
Sbjct: 237 RFNTDEVYVKSPEEMYDNFKNVKQALENTVKIAEMCNVELEFGKLHLPSF---EVEEGYT 293

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E  LR +   GL+ R           +++   RL++EL+VI++M +  YFLIV DFI+
Sbjct: 294 PYE-YLREQCYKGLKSRYGDNC------SEEIIHRLEYELSVISQMGYVDYFLIVWDFIK 346

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A++  I VGPGRGS AGS+ +YAL IT IDPL+++LLFERFLNP+R+SMPD DIDFC +
Sbjct: 347 YAREQGIMVGPGRGSAAGSIVSYALGITSIDPLKYNLLFERFLNPERISMPDIDIDFCYE 406

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR EVI YV  KYG +RV+QIITFG++ A+A +RDVGRAL + Y  VD + K+IP     
Sbjct: 407 RRQEVIDYVIRKYGKDRVSQIITFGTMAARAVIRDVGRALDISYGDVDAIAKMIPFQIGM 466

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            +  +A+  +   ++    D     L++ ++ LEGL RHASTHAAG+VI   P+ + VP+
Sbjct: 467 NID-KALEMNQELKKRYETDEETQVLIDTARTLEGLPRHASTHAAGVVISKEPIVEYVPL 525

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
              +  +   TQ     +E+ GL+K DFLGL+TLT+++ ++D   Q  G K+D+  I FD
Sbjct: 526 --QLNDNSVTTQVTAVPLEELGLLKMDFLGLRTLTVIRDAVDLAEQVHGKKIDIQQIDFD 583

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D + Y ++    T G+FQLES+GM Q ++ +QP+ +EDIIA +SLYRPGP+D I  Y   
Sbjct: 584 DKDVYKMIGDGRTAGVFQLESAGMTQFMKDLQPNSLEDIIAGISLYRPGPMDQIPRYIRN 643

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           KN  + I   HP+++ +L  T G ++YQEQVMQI + L GYSL  +D++RRAM KK    
Sbjct: 644 KNNPKLIKYHHPMLESILDVTYGCMVYQEQVMQIVRELGGYSLGRSDLVRRAMSKKKISV 703

Query: 725 MDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           M+++++ F            + GA  NG+ +  A  IF+ +  FA Y FNKSHAAAYAV+
Sbjct: 704 MEQERKNFVYGITDEEGNEVVKGAVNNGVDEITANKIFDEMMDFASYAFNKSHAAAYAVV 763

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
           +YQTAW+K +YPVEF+AAS+   + + +K+ ++  + +  NIQ++PP +N   V F V +
Sbjct: 764 AYQTAWLKHYYPVEFMAASINSFLGSSDKVSQYVNECKSLNIQVLPPDINESNVKFTVVN 823

Query: 833 NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             I + LAAIK VG    + ++ E   +  F S  DFC R++ + +N+R +ESL+ +GA 
Sbjct: 824 KNIRFGLAAIKNVGENAIKSVIAERQQNGEFSSFLDFCQRIEGRDINKRCVESLIKSGAF 883

Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---AHEKGTFSDKITLEKFSVENS 948
           D     R +L+   + +        K   +   +IF   +  +    +     K    N+
Sbjct: 884 DSLKVFRSKLMAVYERLLDGISQNRKKNMDGQLSIFDMMSEPQELLQEDFPDIKEYPANA 943

Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRK 977
            +  E E  +LG Y SGHPL  Y+ IL +
Sbjct: 944 LLSMEKE--MLGLYVSGHPLSEYQSILER 970


>gi|15615731|ref|NP_244035.1| DNA polymerase III alpha subunit [Bacillus halodurans C-125]
 gi|14194680|sp|Q9K838|DPO3A_BACHD RecName: Full=DNA polymerase III subunit alpha
 gi|10175791|dbj|BAB06888.1| DNA polymerase III alpha subunit [Bacillus halodurans C-125]
          Length = 1116

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 367/1029 (35%), Positives = 597/1029 (58%), Gaps = 52/1029 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VH+ VHS Y+LL     +  +++K  A Q  A+A+TD + ++ A+ F +    +G++PII
Sbjct: 4    VHIHVHSEYTLLSSMCRIPALVEKAKAAQFSALALTDRHVMYGAVPFYKACKESGLKPII 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +   ++ +              ++L   + +GY+ L++L +    + Q ++    
Sbjct: 64   GMETTVRFAEDRE------------SDLLLYARSNKGYEHLLKLST----IIQCREEKEK 107

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK--LFGDRLYVNLQRH 189
             ++W + +  +  ++     SG   RA   + +    +R + F K  L G+ +Y+ +Q  
Sbjct: 108  YVTWEELLAYKDDLLYVIPYSGGFVRACLEDEALERGERFIQFLKDHLGGESVYLEIQ-- 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             G DR +   + QLA    +PLV + +   L  ED +A  V+ A+    +V +  R    
Sbjct: 166  -GTDRSKVEPINQLAAKLAIPLVCSQHIQVLEREDLDAWKVIQAIREGVLVEEL-RIEQE 223

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             D      +EM   F   PEAL+NT ++A RC   L +  P LP+F        ++  E+
Sbjct: 224  EDVCFFTLTEMEQTFRAYPEALQNTKKLADRCHVELTLGKPRLPKFQTPN----EQSAED 279

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR     G + R  +         ++  QRL  EL VI RM FS YFLIV DF+++A++
Sbjct: 280  YLRKLCEQGAKERYGEE------WTKEKAQRLGEELAVIERMGFSDYFLIVWDFMRFARE 333

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             +I  GPGRGS AGS+ AY L ITD+DPL + LLFERFLNP+R+S+PD D+DF   RR+E
Sbjct: 334  ASIVTGPGRGSVAGSLVAYVLFITDVDPLHYDLLFERFLNPERISLPDIDLDFPDHRREE 393

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI YV+ KYG  RVAQI+TFG+L A+A++RDVG+AL +P + ++++ K I   P   + +
Sbjct: 394  VIVYVKKKYGANRVAQILTFGTLAARASVRDVGKALAIPPNVIEKISKEISGRPGMTL-V 452

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +A  ++ R R+   A     +++++++K+EGL RH STHAAG+VI ++PL++++ +    
Sbjct: 453  KAYNENERLRQLVHASDEAQKVMKLARKVEGLPRHTSTHAAGVVISEQPLTEVIALQHG- 511

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET 608
            + ++P+TQ  M+ +E  GLIK DFLGL+ LTLL+  +  + +  G  +++  +P +D +T
Sbjct: 512  QGEVPLTQGTMETVEDVGLIKMDFLGLRNLTLLEMVVKRVRETYGHSLNVKQLPLNDAKT 571

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL    T G+FQLES GMR+ L  ++P+   DI+A+ +LYRPGP++ I  Y   K G 
Sbjct: 572  FALLAKGETTGVFQLESGGMRKVLRELKPNTFADIVAVNALYRPGPMEFIPDYIQGKEGT 631

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            ++I  +HP ++P+L  T GVI+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK  E + +Q
Sbjct: 632  KEITYLHPDLEPILSSTYGVIVYQEQIMQIAAKMAGFSLGEADLLRRAISKKKGEALRQQ 691

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F++GA + G  +  A  I+EL+ +FA+YGFNKSHA AY++++YQ A++K HYP  F 
Sbjct: 692  EEAFVTGAVRQGYEQETAKKIYELIVRFANYGFNKSHAVAYSMLAYQLAYLKAHYPSSFY 751

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            AA  +   +  EK+++  Q+ +Q  I+++PPS++   + F   +  + + L  ++ V   
Sbjct: 752  AALASTIWNQPEKLERLLQEMKQQGIRVLPPSLSKSDIHFSEEEEGVRFPLLPLRYVSVR 811

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
              R +++A  + P  SL D CSRVD + +  RV+ESL+ AGALD  G  R  LL +++  
Sbjct: 812  AIRELIKARREAPVRSLFDLCSRVDGRIVTSRVMESLIKAGALDELG-ERATLLANIEEA 870

Query: 909  QKYAQWVEKNRTNK----HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
             ++A+ V++ + N       ++   E         LEK + E  +V         GFY S
Sbjct: 871  FQFAEQVKEFQENTGGLFQLSVEEPEYIKVEPLTDLEKLAYEKEAV---------GFYLS 921

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            GHPL  Y   LR+     Y E         ++LA M+   ++ +T++G  +G++T S+  
Sbjct: 922  GHPLLAYTESLRQYDRLTYLEGTER---RFVKLAGMIHRIRRIRTKRGEVMGFLTMSDET 978

Query: 1025 KEYEANFFP 1033
             E+EA  FP
Sbjct: 979  GEWEAVVFP 987


>gi|225028022|ref|ZP_03717214.1| hypothetical protein EUBHAL_02291 [Eubacterium hallii DSM 3353]
 gi|224954622|gb|EEG35831.1| hypothetical protein EUBHAL_02291 [Eubacterium hallii DSM 3353]
          Length = 1160

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 378/1055 (35%), Positives = 598/1055 (56%), Gaps = 55/1055 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +  +L +       ++AITD   ++  ++F +KA   GI+P
Sbjct: 2    AFTHLHVHTEYSLLDGSSKIKELLPRAKELGMDSLAITDHGVMYGVIDFYKKAKEVGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +          QG+        +VLL    +GY+ L+++V+R +  +      
Sbjct: 62   ILGCEIYVAPGSRFD-REQGRGE-DRYYHLVLLAENNQGYKNLMKIVTRGFT-EGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFF---FNSSQVAEKRLLTFKKLFGDR-LYVN 185
            R+    L++   EG+I L+   +G I        F+ ++ A  ++   + +FG+   ++ 
Sbjct: 119  RVDYEVLEKY-HEGIIALSACLAGEIPNKILKEDFDGARAAANKM---RDIFGENNFFLE 174

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H    + +  + +++L+    +P+V TN+  ++ EED   HD+L+ +     VS +D
Sbjct: 175  LQDHGIRQQTQVNTSLIRLSRELGIPMVVTNDVHYIREEDAVPHDLLLCIQTGKKVSDQD 234

Query: 245  RPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R     +YLK+  EM  +F    EA++NT +IA RC+  +      +P+F   E  D 
Sbjct: 235  RMRYEGGQYYLKSEEEMQKVFPYAREAMDNTHKIAERCNVEIVFGEQKVPKFDVPEGYD- 293

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIV 360
                       A + L+  L +  + K Y     Q+ ++RL +EL+ I  M +  YFLIV
Sbjct: 294  -----------AFSYLK-ELCETGLVKRYGDPPPQELQERLSYELSTIKNMGYVDYFLIV 341

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++AK   I VGPGRGS AGS+ +Y L IT+IDP+R+ L+FERFLNP+R+SMPD DI
Sbjct: 342  WDFIRFAKSQGIAVGPGRGSAAGSIVSYCLEITNIDPIRYQLIFERFLNPERVSMPDIDI 401

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC +RR EVI YV  KYG ++V QI+TFG++ A+ A+RDVGR L +PY QVD + K+IP
Sbjct: 402  DFCYERRQEVIDYVYEKYGKDKVVQIVTFGTMAARMAVRDVGRVLDIPYVQVDNVAKMIP 461

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +    +  +A+  +   ++A  +D  V  L+++S +LEGL RH S HAAG+VIG +PL 
Sbjct: 462  MELGITIE-KALKSNPELKQAYESDDVVKNLIDMSMRLEGLPRHTSIHAAGVVIGSKPLD 520

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599
            + VP+ R    ++  TQF M  IE+ GL+K DFLGL+TLT++Q +   + ++ G    + 
Sbjct: 521  EFVPLSRGA-DNVITTQFTMTTIEELGLLKMDFLGLRTLTVIQDAARMIGKKLGHDFSID 579

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I +DD + Y ++    T G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I 
Sbjct: 580  TIDYDDAKVYEMIGQGKTEGVFQLESAGMKSFMKELKPTNLEDVIAGISLYRPGPMDFIP 639

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y   K  ++ I    P ++ +L  T G I+YQEQVMQI   L+GY+L  +D++RRAM K
Sbjct: 640  KYIKGKQNQDSIQYTCPELEEILAPTYGCIVYQEQVMQIVMRLAGYTLGRSDLVRRAMSK 699

Query: 720  KIKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            K  + M ++++ F        + G  K GI +  A  IF+ +  FA Y FNKSHAAAYAV
Sbjct: 700  KKGDVMARERQNFVYGNEEEGVEGCIKRGIPEETANKIFDEMIDFAKYAFNKSHAAAYAV 759

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQTAW++ +YPVEF+AA +T  + N +KI ++    R   I I+PP +N   V F V 
Sbjct: 760  VSYQTAWLRCYYPVEFMAALLTSVITNPKKITEYINTCRVMGISILPPDINEGEVGFSVA 819

Query: 832  DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             + I Y LAAIK +G +    +  E  A+  +  L+DF  R+ SK++N+R +E+L+ +GA
Sbjct: 820  GDSIRYGLAAIKSLGKSVIDVMTQEREANGKYKDLKDFMGRLTSKEINKRTIENLIKSGA 879

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSVE 946
            LD FG +R Q +     + +     +K   +   ++F      EK  +  ++        
Sbjct: 880  LDSFGKTRKQQMLVYPVVLEQVNREKKESMSGQMSLFDFFSEEEKKEY--EMQYPDVGEY 937

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVY------KPILRKMGIKGYEES-VATIR-GNNIRLA 998
            + + +   E+ VLG Y SGHPL+ Y      +   R    +  EES  A +R G +  + 
Sbjct: 938  DDAQKLALEKDVLGIYVSGHPLEKYMDSIEKQTTARSTDFEPDEESGRAIVRDGQHYVVG 997

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++ +   K T+    + +VT  +     E   FP
Sbjct: 998  GLISNITAKLTKNNQNMAFVTLEDLYGTVEIIVFP 1032


>gi|153813022|ref|ZP_01965690.1| hypothetical protein RUMOBE_03430 [Ruminococcus obeum ATCC 29174]
 gi|149830824|gb|EDM85914.1| hypothetical protein RUMOBE_03430 [Ruminococcus obeum ATCC 29174]
          Length = 1155

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 385/1049 (36%), Positives = 596/1049 (56%), Gaps = 45/1049 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +   +D++      + AITD   ++  ++F + A AAGI P
Sbjct: 2    NFTHLHVHTEYSLLDGSNKIKEYVDRVKELGMDSAAITDHGVMYGVIDFYRAARAAGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +      +   +  +       +VLL    +GY  L+++VS+ ++ +      
Sbjct: 62   ILGCEVYV--APGSRFDREAGSGEDRYYHLVLLAENNQGYSNLMKIVSKGFV-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+ L  L++   EG+I L+   +G + R       + A+   L ++ +FG    ++ LQ 
Sbjct: 119  RVDLQLLEKY-HEGIIALSACLAGEVARFLTRGMYEDAKAAALRYQDIFGKGNFFLELQD 177

Query: 189  HRGYDRYRESQVVQLAYTHE---LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            H   ++   +Q  QL   H    + LVATN+  +   ED + HDVL+ +     ++ +DR
Sbjct: 178  HGIPEQQNVNQ--QLLKMHRETGIDLVATNDVHYTLAEDAQPHDVLLCLQTGKKLADQDR 235

Query: 246  PRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R     +Y+K+  EM  +F    EALENT +IA+RC   ++     LP+F   +     
Sbjct: 236  MRYEGGQYYVKSPEEMERLFPYATEALENTHKIAQRCHVEIEFGVTKLPKFGVPD-GYTS 294

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             E  NEL      GLE R            ++ ++RL++EL  I  M +  YFLIV DFI
Sbjct: 295  WEYLNEL---CFKGLEERYQP-------VTEELKERLNYELTTIKNMGYVDYFLIVWDFI 344

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+ ++I VGPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D+DFC 
Sbjct: 345  KYARDHDIMVGPGRGSAAGSLVAYTLGITQLDPIRYDLLFERFLNPERVSMPDIDVDFCF 404

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YV+ KYG + V QI+TFG+L A+  +RDVGR + +PY+QVD + K+IP +  
Sbjct: 405  ERRQEVIDYVRRKYGDDCVVQIVTFGTLAARGVIRDVGRVMDLPYAQVDTIAKMIPQELN 464

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  +  F++    D  +  L++ +++LEGL RH S HAAG+VI  + +S+ VP
Sbjct: 465  ITID-KALQMNPEFKKVYEEDKEIHELIDTAKRLEGLPRHTSMHAAGVVISQKDVSEYVP 523

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            + R     + VTQF M  +E+ GL+K DFLGL+TLT++Q ++  + Q  GVK+D+  I +
Sbjct: 524  LSRASDGSI-VTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVHLVEQDTGVKLDMQHIDY 582

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D +    L T  + G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y  
Sbjct: 583  NDKKVLDSLGTGHSDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPQYIR 642

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             KN  + I    P ++P+LK T G I+YQEQVMQI + L+GY+L  +D++RRAM KK   
Sbjct: 643  GKNRPDTIKYDCPQLEPILKPTYGCIVYQEQVMQIVRNLAGYTLGRSDLVRRAMSKKKAA 702

Query: 724  EMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
             M+K+++ F        + G   NGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQ
Sbjct: 703  VMEKERQNFVYGNEAEGVPGCIANGIPEQTANKIYDDMIDFAKYAFNKSHAAAYAVVSYQ 762

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K +YPVEF+AA MT  ++   K+ ++ Q  R+ NI+I+PP VN     F V +  I
Sbjct: 763  TAFLKYYYPVEFMAALMTSVIEMPIKVAEYIQVCRKMNIKILPPDVNRGAYGFSVDNGAI 822

Query: 836  YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y L+AIK VG      ++E   A+  + SL+DF  R+ +  +N+R +E+ + AGALDC 
Sbjct: 823  RYGLSAIKSVGRPVINALVEEREANGEYRSLKDFIERL-TGTVNKRAIENFIKAGALDCL 881

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRF 952
              +R Q +     I       +KN      ++F    E+     +I +      +  +  
Sbjct: 882  EGNRRQKMVVYSQIVDSIAQEKKNSFAGQMSLFDLVGEEDKKDYEIRMPDVEEYDKDMIL 941

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKM------GIKGYEES--VATIRGNNIRLAAMVVSK 1004
              E+ VLG Y SGHPL+ Y+ I+ KM        +  EES       G  + +  M+  K
Sbjct: 942  GFEKDVLGIYLSGHPLEKYRNIMEKMISARTIDFQPDEESGIPKVYDGQKVIIGGMITEK 1001

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              K TR    + ++T  +     E   FP
Sbjct: 1002 TIKYTRNNKVMAFLTLEDLMGTVEIVVFP 1030


>gi|315453387|ref|YP_004073657.1| DNA polymerase III, alpha chain [Helicobacter felis ATCC 49179]
 gi|315132439|emb|CBY83067.1| DNA polymerase III, alpha chain [Helicobacter felis ATCC 49179]
          Length = 1190

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 381/1000 (38%), Positives = 582/1000 (58%), Gaps = 56/1000 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +F HL +H+ YSLL+GA  +  +  +I      +++++D  N+F A++F       GI+P
Sbjct: 3   NFTHLHLHTEYSLLDGANKIKILAQRIKELGMTSVSMSDHGNMFGAIDFYTCMKKEGIKP 62

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIG +  +   +NL+   Q +  F     + L     EGY  L+ L S+ +L  +G    
Sbjct: 63  IIGIETYLHNAENLE-DKQSRQRF----HLCLYAKDQEGYANLMYLSSQAFL--KGFYYF 115

Query: 130 -RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS----------QVAEKRLLTFKKLF 178
            RI    L+E   +GLI  +    G I+     N+           + A++    ++ +F
Sbjct: 116 PRINKKLLKE-RAKGLICSSACLQGEINWHLNLNNPKNKQYGAKGYEEAKRIACEYQDIF 174

Query: 179 GDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
           GD  Y+ + RH   D+ Y + Q+++L+    + L+ATN++ +  +ED  A +V M VA +
Sbjct: 175 GDDFYMEIMRHGITDQLYIDEQLIKLSLQTGIKLIATNDTHYTKQEDARAQEVAMCVAMN 234

Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----HAPIL 292
                KDR + +  + Y+K+ ++M  +F+D+PEALE+T EIAR+C   L +    + P  
Sbjct: 235 KTFGDKDRLKHSVHEFYIKSPAQMAELFADIPEALEHTQEIARKCQLELDLKDDSNPPTP 294

Query: 293 PRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
           PRF        KE  D + E+     +KA  GL+ RL    I    HA  Y++RL++E+ 
Sbjct: 295 PRFKFTKEYATKEGLDFE-EDALYFAHKAREGLKKRLE--IIDPSQHAT-YQERLEYEIK 350

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            I  MKF+GY LIV DFI+ A+++ IPVGPGRGS AGS+ A+ L ITDIDPL++ LLFER
Sbjct: 351 TIVEMKFAGYMLIVWDFIRHARESGIPVGPGRGSAAGSLVAFCLQITDIDPLKYDLLFER 410

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           FLNP+R+SMPD D DFCQ RR E++ Y+ +KYG   VAQ+ITF  + AK  +RDV R L 
Sbjct: 411 FLNPERVSMPDIDTDFCQRRRGEMLDYMVSKYGKYNVAQVITFNKMLAKGVIRDVARVLD 470

Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
           MPY + D + KLIPN     +  +A   + +       + +  ++ E +  LE L R A 
Sbjct: 471 MPYKEADEMAKLIPNRLGITLK-EAFELEPKIAMLINTNKTAKQVWEFALNLENLNRSAG 529

Query: 527 THAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            HAA +V+  +R L    P+Y   R+   VTQ++MK++E   LIKFDFLGLKTL+++  +
Sbjct: 530 KHAAALVVDSERELWHKTPLYTSERTGGIVTQYSMKYLEAVDLIKFDFLGLKTLSVIDDA 589

Query: 586 LDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL-EGMQPDCIEDI 643
           L  + +    K+D   +  DD   Y  +    T+GIFQ+E SGM Q L + ++P C EDI
Sbjct: 590 LKLIEKYAHQKIDFLSVDMDDPSVYQTIQEGNTIGIFQIE-SGMFQTLNKRLRPSCFEDI 648

Query: 644 IALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
           IA+++L RPGP+++ +V  + NRK+G E I      ++P+L+ T G I+YQEQVMQI Q 
Sbjct: 649 IAIIALGRPGPMESGMVDDFVNRKHGLEPITYAFDALEPILRPTYGTIVYQEQVMQIVQT 708

Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
           + G+SL EAD++RRAMGKK  + M   + +FI GA K G     A ++F+L+ KFA YGF
Sbjct: 709 IGGFSLGEADLIRRAMGKKDAQIMADNRAKFIEGARKRGYEADKAGDLFDLIVKFAGYGF 768

Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
           NKSH+AAYA++++QTA++KTHY  EF+AA ++ E  ++E++  +  +A    I++  P V
Sbjct: 769 NKSHSAAYAMLTFQTAYLKTHYKHEFMAAMISSECRHIEEVAHYVDEASSMGIEVQRPHV 828

Query: 822 NTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKK 876
           N   V F+V    G   I + L AIKG G      ++E       F  L+DF S++D  K
Sbjct: 829 NVSDVRFRVQEEGGKKHIVFGLEAIKGAGEGPLGTLVEIREKHGAFKDLQDFISKIDFSK 888

Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            ++R+LE L+ +G+LD  GY+R  +L++LD I +  +  +K        +FA  +   ++
Sbjct: 889 FSKRILEPLIKSGSLDNLGYNRRTMLENLDAICEEGRRKDKTNAQMRAGLFADAQ---TE 945

Query: 937 KITLEKFSVE----NSSVRFENEQRVLGFYFSGHPLDVYK 972
           +  LE    E    N+ + FE E   +G YFSGHPL+ +K
Sbjct: 946 RAHLELTPYEEYDINTLLDFEYE--CMGIYFSGHPLNEFK 983


>gi|313906491|ref|ZP_07839825.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
 gi|313468681|gb|EFR64049.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
          Length = 1157

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 379/1063 (35%), Positives = 592/1063 (55%), Gaps = 72/1063 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YSLL+G+  + + + ++      A AITD   ++  + F ++  AAGI+P
Sbjct: 2    SFVHLHTHTEYSLLDGSNKIKDYVARVKELGMNAAAITDHGVMYGCIAFYKECLAAGIRP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +      +   +          ++LL    EGY  L+++VSR +  +      
Sbjct: 62   ILGCEVYV--APGSRFQKEAGNSEERYYHLILLAENNEGYHNLLKIVSRGF-TEGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+ L  L+E   EG+I L+   +G +      N  +   +  L ++++FG    ++ LQ 
Sbjct: 119  RVDLEVLREY-HEGIICLSACLAGEVATYLAKNMYEEGLQAALRYQEIFGKGNFFLELQD 177

Query: 189  HRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H G  + +    Q+++++    + LV TN+  +   ED +AHD+L+ +     VS ++R 
Sbjct: 178  H-GIPQQQVVNPQLLRMSEETGIELVCTNDCHYTRAEDADAHDILLCIQTGKKVSDENRL 236

Query: 247  RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR----------- 294
            R     +Y+K+  EM ++F    +ALENT +IA RC+  ++ H   LP+           
Sbjct: 237  RYEGGQYYVKSEEEMAALFPYAKQALENTQKIADRCNVEIRFHELKLPKYEVPEGYTSWT 296

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMK 352
            +++K C+D                         I K Y     + R+RLD+EL+VI  M 
Sbjct: 297  YLQKICED------------------------GIRKLYDPVTDEIRERLDYELDVIRTMG 332

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            +  YFLIV D+I +AK++ IPVGPGRGS AGS+ +YA+ IT++DPL++SLLFERFLNP+R
Sbjct: 333  YVDYFLIVWDYIHFAKEHGIPVGPGRGSAAGSIVSYAMGITELDPLKYSLLFERFLNPER 392

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD D+DF  +RR EVI YV  KYG +RV QI+TFG++ A+ A+RDVGR L +PY+  
Sbjct: 393  VSMPDIDVDFGFERRQEVIDYVVRKYGKDRVVQIVTFGTMAARNAIRDVGRVLDLPYALC 452

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            D   K+IP +    +  +A+  +   ++   AD  +  L+++++KLEGL RH S HAAG+
Sbjct: 453  DSTAKMIPQELNITID-KALKMNPELKKEYEADDQIRYLIDMARKLEGLPRHTSMHAAGV 511

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI  + + + VP+ +        TQ+NM  +E+ GL+K DFLGL+TLT++Q ++  +AQR
Sbjct: 512  VISSKEVDEFVPL-QTAADGTVTTQYNMTELEELGLLKMDFLGLRTLTVIQDAVS-MAQR 569

Query: 593  --GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
               V +D+  I ++D     ++      G+FQLES+GM+  ++ ++P  +EDI+A V+LY
Sbjct: 570  NHNVSIDMMKIDYNDPAVMKMIGEGKDEGVFQLESAGMKSFMKELKPSSLEDIVAGVALY 629

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  Y   K   +++    P +  +L+ T G I+YQEQVMQI + L+GYS   +
Sbjct: 630  RPGPMDFIPQYIRGKKHPDEVQYDCPQLKAILEPTYGCIVYQEQVMQIVRELAGYSYGGS 689

Query: 711  DVLRRAMGKKIKEEMDKQK--------ERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            D+LRRAM KK    M++++        ER I G  +NGI + +A  I++ +  FA Y FN
Sbjct: 690  DLLRRAMSKKKMHVMEEERRNFVYGNEERGIPGCIRNGIDEKVANKIYDDMIDFAKYAFN 749

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            KSHAAAYA++S+QTAW+K +YPVEF+AA MT  +DN  K  ++    R   I+I+PP++N
Sbjct: 750  KSHAAAYALVSFQTAWLKCYYPVEFMAALMTSVIDNTAKCAEYMMHTRALGIEILPPNIN 809

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRV 881
                 F V D +I Y+L+AIKGVG      I +E   +  F +L DFC R+  +++N+R 
Sbjct: 810  KSEGTFSVEDGKIRYALSAIKGVGRPVIDAISLERDQNGSFKNLGDFCRRLTGREVNKRT 869

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKIT 939
            LE+ + AGA DC G +R Q +Q    +   A   +KN      ++F    E+     +I 
Sbjct: 870  LENFIKAGAFDCLGGTRRQFMQVYTLVADQAVKEKKNNATGQLSLFDLMGEEDRQQYEIR 929

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-------- 991
            L      +       E+ V G Y SGHPL+  +   RK  I       A           
Sbjct: 930  LPDVGEFDKEEILSFEKEVTGIYISGHPLESDEKKWRK-NITCVSADFALPEEGNLPKLK 988

Query: 992  -GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             GN   +  ++V K  K T K   + ++T  +     E   FP
Sbjct: 989  DGNRETIGGIIVDKTIKYTSKNQTMAFLTIEDLVGSVEVIVFP 1031


>gi|124002816|ref|ZP_01687668.1| DNA polymerase III alpha subunit [Microscilla marina ATCC 23134]
 gi|123992044|gb|EAY31431.1| DNA polymerase III alpha subunit [Microscilla marina ATCC 23134]
          Length = 1403

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 381/1045 (36%), Positives = 584/1045 (55%), Gaps = 61/1045 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++K   F HL VHS +S+L+   S+  ++        PAIA TD  N+ +A +   +   
Sbjct: 234  VDKFIPFSHLHVHSQFSILQSTASVGGLIKFAKEHGMPAIAFTDHGNMHAAFKAVGEGAK 293

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              ++ IIGC+  +  Q+  K T   K+      + VLL    E Y RL +L S  Y+   
Sbjct: 294  NDVKVIIGCEFYV-AQERTK-TKFTKSDRDRRFNQVLLAKDQEAYHRLAKLSSLGYIEGY 351

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    ++E   EGLI LTG   G I           AE+    +  LFGD  YV
Sbjct: 352  YAGFPRIGKDLIEEY-HEGLIALTGNLQGEIPDLILNQGEHEAEEAFKWWHNLFGDDFYV 410

Query: 185  NLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             + RH   +  R ++V+ + A  + +  +ATNN  ++ +ED +AHD L+ V  +    +K
Sbjct: 411  EIMRHGQEEEERVNEVLLKFAAKYGVKPIATNNVYYIGDEDADAHDSLLCVKGA---DKK 467

Query: 244  DRPRV-TPD--------------HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              P++ TPD              +Y+K   EM  +FSD+P ALE T EI  +CS I    
Sbjct: 468  STPKMFTPDIKRRNLRYGMPNEEYYMKTPEEMNELFSDIPIALETTQEIVDKCSPIKLKR 527

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P +   E       +++ LR+    G   R        G   ++ R+RLD ELN+I
Sbjct: 528  DILMPVY---EMPSEFATQDDYLRHLTYEGATKRY-------GEITEEIRERLDHELNII 577

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
              M F GYFLIV DFI  A+   + VGPGRGS AGS  A+ + IT+IDP++++LLFERFL
Sbjct: 578  KSMGFPGYFLIVQDFINAARDMGVFVGPGRGSAAGSAVAFCIGITNIDPIKYNLLFERFL 637

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF  + R + I YV +KYG  +VAQIIT+G++ AK A++DV R L++P
Sbjct: 638  NPERVSMPDVDIDFDDEGRQDAINYVIDKYGKNQVAQIITYGTMAAKMAIKDVARVLELP 697

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD---RLLEISQKLEGLYRHA 525
                ++L K +P+ P   +   A A+    ++  LA P  D   ++L  ++ LEG  R  
Sbjct: 698  IPDSNKLAKYVPDKPGTKLK-DAFAEVQELKDV-LARPEGDLENQVLRQAKILEGSVRGT 755

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
              HAAG++I    L + +P+     +DL VTQF+ K IE AG++K DFLGLKTLT+++ +
Sbjct: 756  GIHAAGVIIAPDDLLKYIPVCTSKDADLLVTQFDGKVIEDAGMLKMDFLGLKTLTVIKDA 815

Query: 586  LDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            L  + +   + +D+  IP DD  T  L     T+G FQ ES GMR  L+ ++P  IED+I
Sbjct: 816  LRMIKKNYDIDIDMDKIPLDDQATLELYQNGETVGTFQFESEGMRMYLKQLKPTNIEDLI 875

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            A+ +LYRPGP+  I  + NRK+G E++   H L++P+L  T G+++YQEQ+MQ AQ+L G
Sbjct: 876  AMNALYRPGPLQFIPNFINRKHGTEEVEYPHDLLEPILNNTYGIMVYQEQIMQTAQILGG 935

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNK 763
            YSL  AD+LRRAMGKK  EEMD+Q+  F+ GA + +GI +  +  +FE++ +FA YGFN+
Sbjct: 936  YSLGGADLLRRAMGKKKLEEMDRQEVIFMKGAKEIHGIPEEKSRKVFEVMKEFAKYGFNR 995

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAY+V++YQTA++K +YP E++A+ +T  M+N++K+  F  + +   +QI+ P VN 
Sbjct: 996  SHSAAYSVVAYQTAYLKANYPSEYMASVLTHNMNNIDKVTFFIDETKNMGLQILGPDVNE 1055

Query: 824  PCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRV 881
                F V    +I + L A+KG G     +I+E    + PF  + DF  RV+ + +N++ 
Sbjct: 1056 SEQSFTVNPVGQIRFGLGAVKGTGDAAVENIIEERKKNGPFKDMFDFARRVNLRTVNKKS 1115

Query: 882  LESLVFAGALDCFG-YSRMQLLQSLDN--------IQKYAQWVEKNRTNKHENIFAHEKG 932
             E    AGA D  G   R Q   ++ N        I K+    +K   N   ++F     
Sbjct: 1116 FECFAQAGAFDNLGKLHRAQFFAAMPNDTATFLERIIKFGNAYQKEIENAKTSLFGA--- 1172

Query: 933  TFSDKITLEKFSVENSSV-----RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              S  +T+ +  V  +       +   E+ V+GFY SGHPLD Y+  ++K G    ++ +
Sbjct: 1173 --SGAVTIAQPKVPYTEPWSQLEKLNREKEVVGFYMSGHPLDRYRAGMKKFGAVALDK-I 1229

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKG 1012
             + +   + +A +V  K+ ++T+ G
Sbjct: 1230 ESFQHQEVTVACIVTKKELRQTKNG 1254


>gi|325507930|gb|ADZ19566.1| DNA polymerase III DnaE [Clostridium acetobutylicum EA 2018]
          Length = 1164

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 388/1068 (36%), Positives = 602/1068 (56%), Gaps = 74/1068 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+G+  +  ++++       +IAITD   ++  +EF + A   GI+PI
Sbjct: 8    FVHLHVHTEYSLLDGSGKVKKLVERAKELGMKSIAITDHGAMYGCVEFYKAAKEVGIKPI 67

Query: 71   IGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IGC++ +  +  ++K  +     +     +VLLV    GY+ L+E+VS   + +      
Sbjct: 68   IGCEIYVAGKSMHIKHPDAENETY----HLVLLVKNEIGYKNLMEIVSTASI-EGFYYKP 122

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+   +L    +EGLI  +    G +      ++ + A+K  L +K+ F D  Y+ LQ H
Sbjct: 123  RVDHEYLMS-HSEGLIASSACFGGEVQSYILKDNLEKAKKAALFYKETFKDGFYLELQYH 181

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D  +    +V ++   ++PL+ATN+  ++++ED  AHD+L+ +     + +++R R 
Sbjct: 182  ALKDDMKVNDTLVNMSKELDIPLIATNDVHYINKEDSIAHDILLCIQTGKTIDEENRMRY 241

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             P+  YLK++ EM   FS + EAL NT +IA  C+F  + H   LP F   E +D     
Sbjct: 242  APEQFYLKSQEEMYEQFSYVKEALLNTSKIADECNFEYKFHESKLPNFPLPEGED----H 297

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+     GL  R               ++RL++EL +I  M +  YFLIV DFI++A
Sbjct: 298  YEYLKKLCYEGLNERYNP-------ITDTIKERLEYELGIIKEMGYVDYFLIVWDFIKFA 350

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++N +P GPGRGS AGS+ AY L IT IDP+++SL+FERFLNPDR+SMPD D DFC + R
Sbjct: 351  RENGVPTGPGRGSAAGSIVAYTLGITKIDPIKYSLIFERFLNPDRVSMPDIDSDFCYENR 410

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN------ 481
             +VI YV  KYG + V+QI+TFG++ A+  +RDVGRA+   Y +VD++ K+IPN      
Sbjct: 411  QKVIDYVVEKYGKDCVSQIVTFGTMAARLCIRDVGRAMNYSYGEVDKIAKMIPNVLNINI 470

Query: 482  DPAHPVS--LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            D A  ++  L+AI DD         D  +  L++IS+KLEGL RH STHAAG+VI  +PL
Sbjct: 471  DKALEMNPELKAIYDD---------DDRIKDLIDISRKLEGLPRHTSTHAAGVVISSQPL 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
               VP+ ++  S   V QF M  +E+ GL+K DFLGL+TLT++  ++  + Q R + +D+
Sbjct: 522  VNYVPLLKNEES--IVAQFTMGILEELGLLKMDFLGLRTLTVINDTIKMVKQNRNIDIDI 579

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I FDD+  Y ++    T+G+FQLES+GM   ++ ++PD +EDIIA +SLYRPGP++ I
Sbjct: 580  DDIDFDDYGVYKMIGEGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGISLYRPGPMNEI 639

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y   KN  E+I  + P +  +L  T G IIYQEQVMQI + L+GYS+  +D++RRAM 
Sbjct: 640  PRYIRNKNNPEEIKYVTPELKHILDVTYGCIIYQEQVMQIVRDLAGYSMGRSDLVRRAMS 699

Query: 719  KKIKEEMDKQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHA 766
            KK    M++++  FI G              KNGIS+ IA  IF+ +  FA Y FNKSHA
Sbjct: 700  KKKHHVMEEERHNFIHGVVDENGNVEVPGCIKNGISEKIANEIFDSMMDFASYAFNKSHA 759

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYAV++Y+TA++  +YP E+LAA +   M N EK+  + + A +  IQ++PP +N    
Sbjct: 760  AAYAVVAYETAYLIHYYPAEYLAAMLNSVMGNSEKVAFYIRCAEELKIQVLPPDINGSYS 819

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
             F V ++ I + LAAIK VG      I+ A  +K  F S  DFC+++D+ ++N+R +ES+
Sbjct: 820  RFTVKEDTIRFGLAAIKNVGFNVIESIVRARNEKGNFISFTDFCNKIDTSEVNKRAVESI 879

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + +G  D  G  R +LL   + I        K       N+F        +++ ++   +
Sbjct: 880  IKSGGFDTLGVYRSKLLAVFEKIMDGISGQRKKNIKGQMNLFTDFVQDDYEEVEIQYPDI 939

Query: 946  ENSSVRF--ENEQRVLGFYFSGHPLDVYKPILRKM------------------GIKGYEE 985
            +    ++    E+ + G Y SGHPL+ Y+  L+ M                  G+K  +E
Sbjct: 940  KEFDKKYLLAMEKEMTGLYLSGHPLEDYEETLKNMTSIKISDIVAPQSLEDNDGVK-LDE 998

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +     G  + +  +V S  +K TR  + + ++   +     E   FP
Sbjct: 999  NTDVQDGTRVIIGGIVTSVTKKVTRSNTMMAFIKLEDMYAAIEVVIFP 1046


>gi|169334376|ref|ZP_02861569.1| hypothetical protein ANASTE_00775 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259093|gb|EDS73059.1| hypothetical protein ANASTE_00775 [Anaerofustis stercorihominis DSM
           17244]
          Length = 1215

 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 364/1018 (35%), Positives = 585/1018 (57%), Gaps = 93/1018 (9%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S  F HL VH+ YSLL+G   +  +   +      +IAITD  N+F  +EF +     GI
Sbjct: 2   SIPFTHLHVHTEYSLLDGFCKIKELPKLVKDMGMDSIAITDHGNMFGVIEFYRACRKEGI 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI--VLLVSTAEGYQRLIELVSRMYLLDQG 125
           +P++GC++ + M D      +G+ P     S   +L      GY+ L+++VS  Y  +  
Sbjct: 62  KPVLGCEIYMTMGDR-----KGRDPMNDKQSFHFILFAENEIGYKNLMKVVSIAYT-EGF 115

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184
               R     L++  +EG+I  +    G I R       + A+K L  F  ++G D  ++
Sbjct: 116 YYKPRADFDLLEKY-SEGIIATSACIGGIIPRKINSGEIEEAKKYLERFINIYGKDNFFL 174

Query: 185 NLQRHRGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            +Q H G +  + +  +++++A  + + L+ATN+S +L + D EAHDVL+ V  ++ +S 
Sbjct: 175 EIQDH-GLEEEKTANEELIKMAKEYGVGLIATNDSHYLRKSDSEAHDVLLCVQTASNLSD 233

Query: 243 KDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILP----- 293
           ++R R   D  Y+K   EM  +F   PEA+ENT +IA RC+  ++    H P+ P     
Sbjct: 234 ENRMRFPNDEFYIKTPEEMSDLFKYCPEAIENTHKIAERCNVEIEFGHYHLPVFPLPEGM 293

Query: 294 ---RFIEKEC-DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              ++++K C D + K+ +N                         ++  +RL++EL VI 
Sbjct: 294 TSQQYLKKLCMDGLYKKYDNV-----------------------TKELTERLEYELGVIN 330

Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            M F+ YFLIV DFI +++ ++IPVGPGRGS AGS+ +Y L IT IDP++++L+FERFLN
Sbjct: 331 DMGFNDYFLIVWDFINYSRTHDIPVGPGRGSAAGSIVSYTLDITQIDPIKYALIFERFLN 390

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            +R+SMPD DIDFC ++R E I YV  KYG + V+QI+TFG+L+ KAA++D+ R++ + +
Sbjct: 391 NERVSMPDIDIDFCYEKRHEAIEYVIEKYGFDNVSQIVTFGTLKPKAAVKDIARSMGISF 450

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            Q +++ KLIP D A     +AIA +    +    DP++ +LL+ ++ +EG+ RH+STHA
Sbjct: 451 DQSNKIAKLIP-DEAKITIEKAIAMNPELHQMYDEDPTIKKLLDTAKAVEGMPRHSSTHA 509

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
           AG++I DR +S  VP+Y  +  D    QFNM  +E+ GL+K DFLGLK LT+++ +LD +
Sbjct: 510 AGVIISDRAVSDYVPLY--LNKDSIAAQFNMTTVEELGLLKMDFLGLKNLTVIKHTLDNI 567

Query: 590 A-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
              +G+ VD+  I   D   +  ++   T+G+FQL S GM+  ++ ++P+  EDIIA +S
Sbjct: 568 KLSKGIDVDIDNISLTDQNVFDTISRGDTIGVFQLASPGMQSFMQRLKPNTFEDIIAGIS 627

Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
           LYRPGP+D I  Y + K+    I  +HP ++P+L  T G+IIYQEQVMQI + L+GYS+ 
Sbjct: 628 LYRPGPMDMIPTYIDNKHNPANISYLHPSLEPILNVTYGIIIYQEQVMQIVRDLAGYSMG 687

Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKN----------------GISKTIAVNIFEL 752
            +D++RRAMGKK  E + K++E F+ G  +                 GI +     I++L
Sbjct: 688 RSDLIRRAMGKKKHEVIAKEREIFLHGNEEAFNKGEDKEKVHGCVAIGIDEKTGNEIYDL 747

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           + KFA YGFNKSHAAAY VISYQTA++KT+YP EF+AA +T+ + + +++  +    ++ 
Sbjct: 748 MEKFASYGFNKSHAAAYGVISYQTAYLKTYYPAEFMAALITVYIGSDDRM-LYMNHLKEK 806

Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSR 871
            I+++PP VN     F V +  + + L A+KG+G +    I++A  +K  F S  DF ++
Sbjct: 807 GIKLLPPDVNKSYSRFTVDNGSVRFGLLALKGLGESAIEEIIQAREEKGDFTSFPDFVNK 866

Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLL------------QSLDNIQKYAQWVEKNR 919
           ++   LN++ +ESL+ +GA D  G +R +L             Q   NI      +E   
Sbjct: 867 IEFNSLNKKGVESLILSGAFDSLGNNRRELYCVYEDFLNDTLRQRKQNIAGQTTLLEMLS 926

Query: 920 TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
             ++E I          ++T+   +   +  + + E+ V+G Y SGHPL  ++  L K
Sbjct: 927 QEENEQI----------EMTIPTMAEFETKEKLKFEKEVMGMYISGHPLAEHEEDLNK 974


>gi|269926189|ref|YP_003322812.1| DNA polymerase III, alpha subunit [Thermobaculum terrenum ATCC
            BAA-798]
 gi|269789849|gb|ACZ41990.1| DNA polymerase III, alpha subunit [Thermobaculum terrenum ATCC
            BAA-798]
          Length = 1180

 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 378/1053 (35%), Positives = 604/1053 (57%), Gaps = 57/1053 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL +HS YSLL+G   + + +    A    AIA+TD   ++ A+E   +A  AGI
Sbjct: 2    SSDFVHLHLHSDYSLLDGLGKIKDYVSLAKAYGMKAIALTDHGVMYGAIEMYTEALEAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC+L +  +       +  + +     +++L    EGYQ LI+LVS  +L +    
Sbjct: 62   KPIIGCELYVAPRSRHDREKRLDSDYA---HLLVLAKDYEGYQNLIKLVSYAFL-EGYYY 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              RI    L +  ++GLI+ +    G + +       + A +    ++ + G +  ++ L
Sbjct: 118  KPRIDHELLAKY-SKGLIVTSSCIGGEVPQLLLQGKDKEARELADKYRSIVGRENYFIEL 176

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   + R   +++++LA   E+PLVAT +  +  +ED    D+L+ V     V+ K+R
Sbjct: 177  QDHPFEEQRIANTKLIELAKDLEIPLVATCDVHYPRQEDAAIQDILLCVQTGKQVTDKNR 236

Query: 246  PRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R++ D +Y+++  EM   F D PEA++NT  IA  C+  + +   ILP F   E  D+Q
Sbjct: 237  MRMSSDTNYMRSPQEMEQAFRDYPEAIKNTALIAEMCNLQIPMGKWILPHFDVPEGYDLQ 296

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR     GL  + ++         Q+ R RL++EL+VI    ++ Y LIV DF+
Sbjct: 297  ----SYLRYLCEEGLRQKYSE-------VTQEIRDRLEYELDVINTKGYTAYMLIVQDFV 345

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WA+   I V   RGS AGS+ +Y L IT  DP+ + L FERFL   R S PD D+DF  
Sbjct: 346  NWARSRGIAV-TSRGSAAGSLVSYLLNITTADPIEYKLPFERFLTIHRPSPPDIDMDFED 404

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EVI YV +KYG E VAQIITFG+++A+AA+RDVGRAL + YS  D + K+I   P 
Sbjct: 405  KRREEVIEYVTSKYGEENVAQIITFGTMEARAAVRDVGRALGISYSDTDTIAKMI--QPG 462

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+ +    R+    D  + +L++++ KLEG+ RHASTHAAG++I   P+    P
Sbjct: 463  WSIK-EALENSLALRQWYERDERIKQLIDVASKLEGVTRHASTHAAGVIISREPIINYAP 521

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            + +D     P+ QF+M+  EK GL+K DFLGL  L++L +++  + Q RG+ ++L  +P 
Sbjct: 522  LQKDKNGSRPLVQFDMRMCEKIGLLKMDFLGLANLSILGRAVKTIKQTRGIDIELDKLPL 581

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +TY LL++  T G+FQLES+GMR+ ++ ++P  I D+ A+++LYRPGP+D I  Y  
Sbjct: 582  DDTKTYELLSSGETTGVFQLESAGMRRYIKELKPSNIRDVAAMIALYRPGPMDMIPTYIA 641

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+E +  + P ++P+LK++ GV++YQ+ ++ IA  ++GY+  EAD LR+A+GKKI+E
Sbjct: 642  RKHGREPVEYLVPGLEPILKDSYGVLVYQDDILLIAIEIAGYTWEEADKLRKAVGKKIRE 701

Query: 724  EMDKQKERFISGASKN-GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E++ Q+++FI G  ++ G+S   A  +++ +  FA YGFNK+HAAAY++++YQTA++K +
Sbjct: 702  ELEAQRDKFIKGCQEHGGLSPEKARELWDWMEPFARYGFNKAHAAAYSLVAYQTAYLKAN 761

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-------- 834
            YP E++++ +T+ MDN EK+     +  +  I+++PPSVN    +F +            
Sbjct: 762  YPSEYMSSLLTVGMDNSEKVASGIVECNRMGIRVLPPSVNDSFEEFTLEPQSQRPGEPIP 821

Query: 835  IYYSLAAIKGVGTTTARHIM---EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            I + L A+K VG+     I+   E+  DK F S E FC+ VD K++N+R LESL+ AGA 
Sbjct: 822  IRFGLGAVKNVGSGPISAIVSARESLPDKRFKSFEHFCTVVDFKQINKRALESLIKAGAF 881

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-----ITLEKFSVE 946
            D FG+ R QLL ++D      Q +++       ++F      FS +     +TL +    
Sbjct: 882  DEFGH-RSQLLAAIDEAIALNQKMQRASDLGQFSLFGD---AFSSQDHLPSLTLPEVDEA 937

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                    E+ +LG Y S HPL+      R        E    + G  +R+AAM+V+ Q 
Sbjct: 938  PKEQLLAWEKEMLGLYLSEHPLNAVLGKRRLDSTSLISEISEEMVGQTVRVAAMLVNPQI 997

Query: 1007 KKTRK------------GSRIGWVTFSEPAKEY 1027
            + T++             S I +V F E  ++Y
Sbjct: 998  RTTKRQQEMLIGKLEDQTSSIDFVVFPEQYEKY 1030


>gi|15893807|ref|NP_347156.1| DNA polymerase III DnaE [Clostridium acetobutylicum ATCC 824]
 gi|15023379|gb|AAK78496.1|AE007566_6 DNA polimerase III, alpha chain (dnaE) [Clostridium acetobutylicum
            ATCC 824]
          Length = 1167

 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 388/1068 (36%), Positives = 602/1068 (56%), Gaps = 74/1068 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+G+  +  ++++       +IAITD   ++  +EF + A   GI+PI
Sbjct: 11   FVHLHVHTEYSLLDGSGKVKKLVERAKELGMKSIAITDHGAMYGCVEFYKAAKEVGIKPI 70

Query: 71   IGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IGC++ +  +  ++K  +     +     +VLLV    GY+ L+E+VS   + +      
Sbjct: 71   IGCEIYVAGKSMHIKHPDAENETY----HLVLLVKNEIGYKNLMEIVSTASI-EGFYYKP 125

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+   +L    +EGLI  +    G +      ++ + A+K  L +K+ F D  Y+ LQ H
Sbjct: 126  RVDHEYLMS-HSEGLIASSACFGGEVQSYILKDNLEKAKKAALFYKETFKDGFYLELQYH 184

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D  +    +V ++   ++PL+ATN+  ++++ED  AHD+L+ +     + +++R R 
Sbjct: 185  ALKDDMKVNDTLVNMSKELDIPLIATNDVHYINKEDSIAHDILLCIQTGKTIDEENRMRY 244

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             P+  YLK++ EM   FS + EAL NT +IA  C+F  + H   LP F   E +D     
Sbjct: 245  APEQFYLKSQEEMYEQFSYVKEALLNTSKIADECNFEYKFHESKLPNFPLPEGED----H 300

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+     GL  R               ++RL++EL +I  M +  YFLIV DFI++A
Sbjct: 301  YEYLKKLCYEGLNERYNP-------ITDTIKERLEYELGIIKEMGYVDYFLIVWDFIKFA 353

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++N +P GPGRGS AGS+ AY L IT IDP+++SL+FERFLNPDR+SMPD D DFC + R
Sbjct: 354  RENGVPTGPGRGSAAGSIVAYTLGITKIDPIKYSLIFERFLNPDRVSMPDIDSDFCYENR 413

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN------ 481
             +VI YV  KYG + V+QI+TFG++ A+  +RDVGRA+   Y +VD++ K+IPN      
Sbjct: 414  QKVIDYVVEKYGKDCVSQIVTFGTMAARLCIRDVGRAMNYSYGEVDKIAKMIPNVLNINI 473

Query: 482  DPAHPVS--LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            D A  ++  L+AI DD         D  +  L++IS+KLEGL RH STHAAG+VI  +PL
Sbjct: 474  DKALEMNPELKAIYDD---------DDRIKDLIDISRKLEGLPRHTSTHAAGVVISSQPL 524

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
               VP+ ++  S   V QF M  +E+ GL+K DFLGL+TLT++  ++  + Q R + +D+
Sbjct: 525  VNYVPLLKNEES--IVAQFTMGILEELGLLKMDFLGLRTLTVINDTIKMVKQNRNIDIDI 582

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I FDD+  Y ++    T+G+FQLES+GM   ++ ++PD +EDIIA +SLYRPGP++ I
Sbjct: 583  DDIDFDDYGVYKMIGEGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGISLYRPGPMNEI 642

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y   KN  E+I  + P +  +L  T G IIYQEQVMQI + L+GYS+  +D++RRAM 
Sbjct: 643  PRYIRNKNNPEEIKYVTPELKHILDVTYGCIIYQEQVMQIVRDLAGYSMGRSDLVRRAMS 702

Query: 719  KKIKEEMDKQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHA 766
            KK    M++++  FI G              KNGIS+ IA  IF+ +  FA Y FNKSHA
Sbjct: 703  KKKHHVMEEERHNFIHGVVDENGNVEVPGCIKNGISEKIANEIFDSMMDFASYAFNKSHA 762

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYAV++Y+TA++  +YP E+LAA +   M N EK+  + + A +  IQ++PP +N    
Sbjct: 763  AAYAVVAYETAYLIHYYPAEYLAAMLNSVMGNSEKVAFYIRCAEELKIQVLPPDINGSYS 822

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
             F V ++ I + LAAIK VG      I+ A  +K  F S  DFC+++D+ ++N+R +ES+
Sbjct: 823  RFTVKEDTIRFGLAAIKNVGFNVIESIVRARNEKGNFISFTDFCNKIDTSEVNKRAVESI 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + +G  D  G  R +LL   + I        K       N+F        +++ ++   +
Sbjct: 883  IKSGGFDTLGVYRSKLLAVFEKIMDGISGQRKKNIKGQMNLFTDFVQDDYEEVEIQYPDI 942

Query: 946  ENSSVRF--ENEQRVLGFYFSGHPLDVYKPILRKM------------------GIKGYEE 985
            +    ++    E+ + G Y SGHPL+ Y+  L+ M                  G+K  +E
Sbjct: 943  KEFDKKYLLAMEKEMTGLYLSGHPLEDYEETLKNMTSIKISDIVAPQSLEDNDGVK-LDE 1001

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +     G  + +  +V S  +K TR  + + ++   +     E   FP
Sbjct: 1002 NTDVQDGTRVIIGGIVTSVTKKVTRSNTMMAFIKLEDMYAAIEVVIFP 1049


>gi|237804896|ref|YP_002889050.1| DNA polymerase III subunit alpha [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273196|emb|CAX10109.1| DNA polymerase III alpha subunit [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 1237

 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 386/1059 (36%), Positives = 584/1059 (55%), Gaps = 68/1059 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+   + K    Q PA+A+TD  NLF A+EF +      I+P
Sbjct: 2    TWIPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +          + K+       ++LL    EGY+ L  L S  Y   +G   V
Sbjct: 62   IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT--EGFYYV 117

Query: 130  -RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q 
Sbjct: 118  PRIDRDLLSQ-HSKGLICLSACLSGSVAQAAL-ESEEDLEKDLLWYQDLFQEDFFSEVQL 175

Query: 189  HRG----------------YDRYRESQV----VQLAYTHEL--PLVATNNSLFLSEEDYE 226
            H+                 Y ++ E Q+      LA +  L  P VATN+  +L+ +D+ 
Sbjct: 176  HKSSEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWL 235

Query: 227  AHDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
            AH++L+ V           ++ + + K +   + + Y K+   M  +F+  PE + NT  
Sbjct: 236  AHEILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQGMAELFAAHPETITNTCI 295

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA--------- 327
            +A RC   L       P ++ +         E E    + A LE    QG          
Sbjct: 296  VAERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELL 355

Query: 328  --IAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
              IAK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSG
Sbjct: 356  GHIAKKFPGEDPLTLVKERLKLESSIIIPKGMCDYLLIVWDIINWAKDHGIPVGPGRGSG 415

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            AGSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G +
Sbjct: 416  AGSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKD 475

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
             VAQIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S  A+  D   R+ 
Sbjct: 476  NVAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELRQL 533

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
             + D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK
Sbjct: 534  YVDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMK 593

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620
             +E  G++K DFLGLKTLT +  +   + ++ G+ +  + IP DD  T+ LL    T+GI
Sbjct: 594  PVESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGI 653

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ+ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P
Sbjct: 654  FQMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEP 713

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NG
Sbjct: 714  ILKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANG 773

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            I  +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E
Sbjct: 774  IDPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIE 833

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SAD 859
            K+ K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    +
Sbjct: 834  KVGKLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKN 893

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P+ SL+DF  R D KK+ ++ LE+LV AG  DCF  ++   L  L+++       +K  
Sbjct: 894  GPYKSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEA 953

Query: 920  TNKHENIFAHEKGTFSD-KITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILR 976
                   F+ +       +IT+   +V   S +   + E+ +LG Y + HP+D  + +L 
Sbjct: 954  ATGVLTFFSLDSMARDPVRITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLP 1013

Query: 977  KMGIKGYEESVATIRGNNIR-------LAAMVVSKQQKK 1008
             + +    +      G  IR       +   + S +QKK
Sbjct: 1014 FLSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKK 1052


>gi|167750256|ref|ZP_02422383.1| hypothetical protein EUBSIR_01230 [Eubacterium siraeum DSM 15702]
 gi|167656818|gb|EDS00948.1| hypothetical protein EUBSIR_01230 [Eubacterium siraeum DSM 15702]
          Length = 1109

 Score =  635 bits (1639), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 375/1004 (37%), Positives = 569/1004 (56%), Gaps = 39/1004 (3%)

Query: 41   QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNL-KMTNQGKTPFPTVPSI 99
            Q A+A+TD   ++ +++F  +    GI+ IIGC++ +  +    K T     P      +
Sbjct: 3    QTAVALTDHGVMYGSIDFYNECVENGIKAIIGCEVYVAPRTRFDKSTKSDMKPH----HL 58

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            VLL    EGY+ L +LV+  Y  +      R+    L+   ++GLI L+   SG + R  
Sbjct: 59   VLLCKDNEGYKNLSKLVTLGYT-EGFYNKPRVDRELLRRY-SKGLICLSACISGELARTL 116

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSL 218
                   A   +  ++++FG+  Y+ LQ H   ++ R    ++++A      LVATN++ 
Sbjct: 117  LDGRLADAVTLVKEYREIFGEDYYIELQSHGISEQERILPYLLRVAKDTGTQLVATNDAH 176

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPE-ALENTVE 276
            ++ +ED     VL  +A +T +  K+  +   D  YLK+  EM ++    P+ A +NTV+
Sbjct: 177  YVEKEDSYVQRVLTCIATNTTLDDKNSMQFATDEFYLKSEDEMKAL--GFPQSAYDNTVK 234

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            IA +C+        ILP F  +  D+ +     ++R     GL  R            ++
Sbjct: 235  IAEKCNVSFTFGHTILPFFKAEGYDNNEIYFNAQVRK----GLVKRYGDPV------PKE 284

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R ++E++VI +M F  YFLIVADFI +AK+N I VGPGRGSGAGSV AY L ITDID
Sbjct: 285  VLDRAEYEMSVIKKMGFIDYFLIVADFIGYAKRNGIAVGPGRGSGAGSVCAYCLGITDID 344

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            P+RF+LLFERFLNP+R++MPDFD+DFC  RR EVI YV  KYG + VAQIITFG++ A+ 
Sbjct: 345  PIRFNLLFERFLNPERVTMPDFDVDFCYIRRQEVIDYVVRKYGRDHVAQIITFGTMAARG 404

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A+RD GRA+ +PY +VD + KLIP    H     A+  +    +   +D  V  L+E ++
Sbjct: 405  AIRDAGRAMGLPYGKVDTVAKLIPMS-MHSTIDGALKSEKELVKLASSDSEVSLLIETAK 463

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            K+EG+ R+ S HAAGIVI   P++  VP+Y++   ++ +TQ+ M  IE+ GL+K DFLGL
Sbjct: 464  KIEGMARNTSIHAAGIVITRDPVADYVPLYQNSEGEV-MTQYTMTAIERLGLLKMDFLGL 522

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            + LT++Q     + +     D+  IP +D ETY ++++ GTLG+FQ ES+GM   L  M+
Sbjct: 523  RYLTVIQDCCKLVVKSCPDFDIEKIPENDAETYDMMSSGGTLGVFQFESAGMTSLLSRMK 582

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            P  +ED+ A +SLYRPGP+D+I  Y   +   EKI   HPL+  +L  T G I+YQEQVM
Sbjct: 583  PRSVEDLTAALSLYRPGPMDSIPTYLANRRNPEKIRYKHPLLKGILDVTYGCIVYQEQVM 642

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
             I ++L+GYS   AD++RRAM KK  E M K++  F+ GA  N + + +A  IF+ +  F
Sbjct: 643  MICRVLAGYSYGRADIVRRAMAKKKPEVMVKERATFVEGAVANNVDRQVAEEIFDDMMSF 702

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A Y FNKSHAAAY++++Y+TA+++ HY  E++ A +T  +    K  ++  D  Q  +++
Sbjct: 703  ASYAFNKSHAAAYSLLAYRTAYLRCHYYKEYMVALLTSVIGWGGKTAEYIGDLAQHGLKL 762

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            +PP VN     F   ++ I + L AIK VG      I+E     PF SL DFC R+  K 
Sbjct: 763  LPPHVNYSETGFSCENDGIRFGLLAIKNVGANMIADIIEERTKHPFKSLFDFCERMSDKN 822

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLD---NIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +N+R LESL+  GA D  G +R +++ SL+   +       +E   +   E+  A E G 
Sbjct: 823  INKRALESLIKCGAFDGLGNNRREMMISLELMLDTLSQRHDLEGQMSLMGEDDAADE-GA 881

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
            F  K   E    +  S     E+ +LG Y SGHP D +  I R+    GYE   + +  N
Sbjct: 882  FQIKPADEYSHAQLLSY----EKEMLGIYISGHPADPFYRIARE---SGYENIGSILESN 934

Query: 994  ----NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                N+R+ A++ S +   T+ G  +G++   + + E E   FP
Sbjct: 935  KDKQNVRVTALLTSVRNHITKSGKTMGFIVIEDASGEIECLVFP 978


>gi|194476714|ref|YP_002048893.1| DNA polymerase III subunit alpha [Paulinella chromatophora]
 gi|171191721|gb|ACB42683.1| DNA polymerase III subunit alpha [Paulinella chromatophora]
          Length = 1175

 Score =  635 bits (1639), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 385/1062 (36%), Positives = 595/1062 (56%), Gaps = 55/1062 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  +  ++        PA+A+TD   ++ ++E  +   AAGI+P
Sbjct: 2    TFVPLHNHSDYSLLDGASQIPQMVKLAKELNMPALALTDHGVMYGSIELLKLCKAAGIKP 61

Query: 70   IIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IIG ++ +    + D  K   +          +V+L   A GY+ L+++ S  +L     
Sbjct: 62   IIGNEMYVINGSINDPQKKKERRY-------HLVVLAKNALGYKNLVKITSISHLRGMRG 114

Query: 127  QSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            + +  R C+   L E  +EGLI+ T    G I ++        A +    ++K+FGD  Y
Sbjct: 115  RGIFARACIDKQLLEQYSEGLIVSTACLGGEIPQSIINGQLDSAREIARWYQKIFGDDFY 174

Query: 184  VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H    DR    ++V++A    + L+ATN++ +L+++D EAHD L+ +    +V+ 
Sbjct: 175  LEIQDHGSLEDRTVNVEIVRIAEELGIELIATNDAHYLTKDDVEAHDALLCILTGKLVTD 234

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296
            + R R T   Y+K+  EM  +F D         A+ NT ++A +      +    +P F 
Sbjct: 235  EKRLRYTGTEYIKSEEEMGLLFRDHLDRDIACNAILNTKKVADKVGEYALLEDHQMPHFP 294

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                          L   +  GL +RL      K      Y +RL++EL VI  M F  Y
Sbjct: 295  LPS----NHTPITYLTKISQQGLSLRLKLSN--KDKDDSTYHKRLNYELKVINEMGFPTY 348

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL+V D+I++A++  I VGPGRGS AGS+ AY L IT+IDP+   L+FERFLNP+R SMP
Sbjct: 349  FLVVWDYIRFAREVGISVGPGRGSAAGSLVAYVLGITNIDPISNGLIFERFLNPERKSMP 408

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY + DRL 
Sbjct: 409  DIDTDFCIERRHEVISYVMQRYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGEADRLA 468

Query: 477  KLIPNDPAHPVSLQA-IADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            KLIP     P  L+  IADDS    FRE    +PS+   + +++++EG  +    HAAG+
Sbjct: 469  KLIPVVRGKPAKLETMIADDSPVPEFREKYKNNPSIMHWVNMARRIEGTNKTFGVHAAGV 528

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQ 591
            VI   PL +LVP+  +    + +TQ+ M+ IE  GL+K DFLGLK LT++ K+++ + A 
Sbjct: 529  VIAASPLDELVPLQLNNDGQI-ITQYFMEDIESMGLLKMDFLGLKNLTMISKTVEIVRAA 587

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             G  +++  +P  D E + +L      GIFQLESSGMRQ +  ++P C+EDI ++++LYR
Sbjct: 588  SGEDLNMDRLPATDTEAFKILEDGDVEGIFQLESSGMRQIVRDLKPSCLEDISSILALYR 647

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+D  ++  + NRK+G E I   HP ++P+L ET G+++YQEQ+M+IAQ L+GYSL E
Sbjct: 648  PGPLDAGLIPKFINRKHGAEAINFTHPSLEPILGETYGIMVYQEQIMRIAQDLAGYSLGE 707

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK   EM K +  FI GA + G+ + +A  +F+ +  FA+Y FNKSH+AAY
Sbjct: 708  ADLLRRAMGKKKTSEMQKHRNLFIKGAKERGVEEPLAKELFDQMVLFAEYCFNKSHSAAY 767

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
              ++YQ A++K HYP+ ++AA +T+     +K++++  +    +I++  P +N    DF 
Sbjct: 768  GAVTYQAAYLKAHYPIAYMAALLTVNSGTSDKVQRYIANCNDIDIEVTAPDINYSGYDFT 827

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                +I + L+A+K +G    R I E+ A    F SL D C RV   ++NRR LESL+  
Sbjct: 828  PVKGKILFGLSAVKNLGNGAIRQISESRAHYGQFLSLADMCDRVPIPQINRRGLESLINC 887

Query: 889  GALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-------AHEKGTFSDKIT 939
            GA+D      +R QL+ +LD    +A    K+R     N+F         +K   +  +T
Sbjct: 888  GAMDSLEPTRNRAQLIANLDLTLDWANSRSKDRAIGQGNLFDLLVISAQGKKSIRASLVT 947

Query: 940  LEKFS-----VENSSVRFENEQRVLGFYFSGHPL-DVYKP--ILRKMGIKGYEESVATIR 991
              K S     +    +R E E  ++GFY S HPL  + +P  +L ++ +   +E +  I 
Sbjct: 948  APKSSPVLDYLPAEKLRLEKE--LVGFYLSDHPLKQLAQPAKLLPQISLSILQEQI-DID 1004

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               + L  ++    +K TRKG  +  +   +     EA  FP
Sbjct: 1005 KAKVSLVVILPEIHEKITRKGDLMAVLQLEDLTGCCEAVIFP 1046


>gi|289450822|ref|YP_003474944.1| DNA polymerase III subunit alpha [Clostridiales genomosp. BVAB3 str.
            UPII9-5]
 gi|289185369|gb|ADC91794.1| DNA polymerase III, alpha subunit [Clostridiales genomosp. BVAB3 str.
            UPII9-5]
          Length = 1325

 Score =  635 bits (1639), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 388/1065 (36%), Positives = 589/1065 (55%), Gaps = 66/1065 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSLL GA  ++ +  +IA     A AITD   ++ ALEF Q      I+PI
Sbjct: 4    FVHLHMHTEYSLLSGANRISELPRRIAELGMSACAITDHGVMYGALEFYQACRKENIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQSV 129
            IGC++ + +  N ++   G     T   ++LL     G + L +LV+  Y     GK  V
Sbjct: 64   IGCEVYVAL--NGRLAKDGVADRRTA-HLILLAENNCGLRNLNKLVTLSYTEGFYGKPRV 120

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPID----RAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
               L  L     EGLI L+G   G I     R  F  + ++A +    ++ +FG   +  
Sbjct: 121  DHELLALYH---EGLIALSGCIEGEIPLALRRGDFAGACELARQ----YQDIFGSENFFL 173

Query: 186  LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
              +  G        S ++++A    +P VATN+  ++ + D  AH++L+ +     ++ +
Sbjct: 174  EMQATGLPEQNMVNSGLIRIAKKLGIPPVATNDCHYMQQTDATAHEILLCIKTGKKLNDE 233

Query: 244  DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE--C 300
             RPR+  D  Y+K+ SEM + F DLPEAL NTV IA RC    +     LP+F + E   
Sbjct: 234  HRPRIGSDQLYIKSPSEMAAAFPDLPEALANTVRIAERCKAEFEFGVLHLPKFKQPEEFS 293

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D +       L  K  AGLE RLAQ A A     + Y +RL +EL+VI  M ++ Y+LIV
Sbjct: 294  DSVAY-----LTTKCRAGLERRLAQAAFAP---RETYEERLKYELSVINSMGYTDYYLIV 345

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI +AK+N I VGPGRGSGAGS+ A+ L IT+IDPLR++L+FERFLN +R+SMPDFDI
Sbjct: 346  WDFIDYAKRNGIFVGPGRGSGAGSLAAFCLGITNIDPLRYNLIFERFLNAERVSMPDFDI 405

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC +RR EVI YV  KYG ERV Q+ITFG++ AKA +RDV R L  P  + D+L K+IP
Sbjct: 406  DFCFERRQEVIDYVYRKYGTERVCQVITFGTMAAKAVVRDVARVLDYPLPETDKLAKMIP 465

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  +  +A+  ++  +     DP V +L++ +Q LEGL RHASTHAAG++I   P+ 
Sbjct: 466  GVLGMTLK-KALNINADLKMLYEKDPQVRQLIDYAQILEGLPRHASTHAAGVIICGEPVV 524

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599
               P+ ++   +  V Q+   +IE  GL+KFDFLGL+TLT+L+ +   +    G ++D  
Sbjct: 525  NYAPLAKN--DEALVVQYTKNYIESIGLLKFDFLGLRTLTVLRDAAAAIKVNYGREIDFD 582

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +   D + +++L    T G+FQLESSGM   ++ ++P  +EDIIA +SLYRPGP++ I 
Sbjct: 583  QLDLADEKVFNMLGRGETDGVFQLESSGMTSFIKELRPTSLEDIIAGISLYRPGPMEQIP 642

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y   ++    I   HPL+ P+L+ T G I+YQEQVMQI + L+G+S+  AD++RRAM K
Sbjct: 643  RYVAARHNPALISYDHPLLRPILQVTYGCIVYQEQVMQIVRDLAGFSMGMADIVRRAMAK 702

Query: 720  KIKEEMDKQKERF-----------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            K  +E+   +  F           + G   NG+ + +   IF  +  FA Y FNK HAA+
Sbjct: 703  KKPKELATYEGLFLFGGHDFKGNKVPGCIANGVEENVGRKIFNEVLAFAGYAFNKPHAAS 762

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+++Y TAW++ +YP EF+AA +   + ++ K   + Q  RQ  I+++P +VN   V F
Sbjct: 763  YAIVAYYTAWLRLYYPTEFMAAILNSFIGDLSKAAHYVQACRQLGIEVLPLNVNYSQVKF 822

Query: 829  KV-GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
               G N+I ++L AIK VG    R ++ E  A+  F    DF  R  +  LNR++ ESL+
Sbjct: 823  ATEGKNKIRFALGAIKNVGFGAIREVVAEREANGLFKDPGDFWRRTANLSLNRKMQESLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---- 942
             AGALDCF   R +LL +   +  Y   V     +     F+   G   + I++ +    
Sbjct: 883  RAGALDCFNIDRARLLTA---VVTYLNTVSAGSGSCLAGQFSLFDGPEGESISVAEPVYL 939

Query: 943  -FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI----------- 990
                 +S  +   EQ ++G Y +GHPL  Y+  +    +      + ++           
Sbjct: 940  PVKAFSSLEKLMMEQELIGLYLTGHPLADYRAQVAAFSVADSSWLLPSVDEQGQVIDERR 999

Query: 991  --RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               G++++  A V+S  ++ TR+ +++  +   +    +E   FP
Sbjct: 1000 AADGDSVKFMAFVLSVTERITRQSTKMARIVAEDFISRFEVVAFP 1044


>gi|218288798|ref|ZP_03493061.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241156|gb|EED08332.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 992

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 364/897 (40%), Positives = 538/897 (59%), Gaps = 46/897 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL VH+++S  E  L + +I+    A + PA+AITDTN ++ AL F + A A GI PI
Sbjct: 3   FVHLHVHTAFSFRESLLRVGDIIRAAKACEMPAVAITDTNAMYGALSFYRLARAEGIAPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129
           IG Q+ +   +   +  +      TV   V+L    +GY+RL  L +R     + K+ V 
Sbjct: 63  IGMQVSLACDEEDAVPGRAAESLDTV---VVLAMGIDGYRRLTRLATRA----RWKRPVP 115

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF---NSSQVAEKRLLTFKKLF-GDRLYVN 185
            + L  L E  ++ L++L GG   P  R F F     ++ AE+RLL         +L+V 
Sbjct: 116 HVTLRELAE-SSDRLVVLCGG---PESRLFDFLARGEAEAAERRLLQVAGAVPAGQLFVE 171

Query: 186 LQRHRGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
           +Q H G  R RE    ++QLA   ++PLVAT++  +L+ ED   H     +A +    + 
Sbjct: 172 VQDH-GLRREREGLPGLIQLAKRWDVPLVATHDVRYLAREDASWHRAYAQLARADAAERF 230

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---C 300
                T + +   ++EM   F++LP+AL  T EIA  C+  L +H   +PR+  K+    
Sbjct: 231 ----ATDEFHFATKAEMADRFANLPDALRRTAEIAEMCALDLPLHQVRMPRYATKDGRPA 286

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
           D++ +E       +    L   + +    +              L+VI RM ++ YFL+V
Sbjct: 287 DEVLREAARAGAARRYGALSPEVEERLERE--------------LDVICRMGYADYFLVV 332

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
           ADFI+ A +  I  GPGRGS AGS+ AYAL ITD+DP+R  LLFERFLNP R+S+PD D 
Sbjct: 333 ADFIRHAHQQGISTGPGRGSAAGSLVAYALRITDVDPIRHKLLFERFLNPARVSLPDIDT 392

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DF  +RR EVIRYV  KYG +RVAQI TFG+LQA+AALRD GR      + VDRL KL+P
Sbjct: 393 DFEFERRGEVIRYVIEKYGRDRVAQIGTFGTLQARAALRDAGRMTGADPALVDRLAKLVP 452

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
               H     A  + + FRE     P   RL E ++++E L  H S HAAG++I   P++
Sbjct: 453 G-VVHASLDGAYQESAAFRELVDGSPDARRLFEAAKRIEDLPHHTSIHAAGVIISPEPIA 511

Query: 541 QLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
             +P+  D+ +D  PVT + M+ +E  G +K DFLGLKTLTL+ + LD + +R GV +D 
Sbjct: 512 DWIPL--DLAADDTPVTAYPMEDVEALGFVKMDFLGLKTLTLIDRCLDSIRKRTGVSIDW 569

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             +   D  TY LLT   T G+FQLES+GMR+ L  ++P  ++D+IA++SL RPGP++NI
Sbjct: 570 RQVNEGDPATYALLTRADTNGVFQLESAGMRRVLRELRPTSLDDVIAVISLNRPGPMENI 629

Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             + + K+G+  +   HP ++P+L +T GVI+YQEQ+MQIA  ++G+SL+EAD+LRRA+ 
Sbjct: 630 PAFCDAKHGRRPVTYPHPDLEPILADTYGVIVYQEQIMQIASQMAGFSLAEADLLRRAVS 689

Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           KK +E +D+++ RF+ G  + G S+  A  ++EL+ +FADYGFN+SHAAAYAV++++TA+
Sbjct: 690 KKKREILDEERSRFVDGCVRRGYSEETAREVYELIVRFADYGFNRSHAAAYAVLAFRTAY 749

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYY 837
           ++ H+  +FLAA +TL M   +KI+ + QDAR+  I + PPSV      + V  D  +  
Sbjct: 750 LRAHFLPDFLAALLTLSMGAPDKIRLYEQDARRHGIAVRPPSVLRSERGYTVEEDGSLRA 809

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            L +I+ VG     HI+   ++KPF SL DF  R++ + +NR+ L+SL  AGALD F
Sbjct: 810 GLISIRNVGEAAVDHILSLRSEKPFASLVDFLRRIEPRIVNRKALDSLFAAGALDEF 866


>gi|239626635|ref|ZP_04669666.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516781|gb|EEQ56647.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1161

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 388/1051 (36%), Positives = 587/1051 (55%), Gaps = 47/1051 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +  +  +       ++A+TD   ++  ++F + A  AGI+P
Sbjct: 2    AFTHLHVHTEYSLLDGSCKIKELTARAKELGMDSMAVTDHGVMYGVIDFYKAAKEAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +    N +   +  +       +VLL    +GY+ L+++VS+ ++ D      
Sbjct: 62   ILGCEVYV--APNSRFDRETVSGEDRYYHLVLLAENNQGYENLMKIVSKGFV-DGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L +   +G+I L+   +G + R       + A +    +  +FG D  ++ LQ 
Sbjct: 119  RVDYEVLAKY-HQGVIALSACLAGEVQRYLTRGMYEEAVRAAGRYVDIFGKDNFFLELQD 177

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+   +Q +++++    L LVATN+  +   ED +AHD+L+ +     V  +DR R
Sbjct: 178  HGLPDQKLVNQGLMRMSRETGLELVATNDIHYTFAEDEKAHDILLCIQTGKKVEDEDRMR 237

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y K+  EM ++F   P+ALENT +IA RC+  ++     LPR+   E  D    
Sbjct: 238  YEGGQYYCKSEEEMKALFPYAPQALENTHKIAGRCNVEIEFGVTKLPRYEVPEGFD---- 293

Query: 307  EENELRNKAVAGLEVRLAQ--GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              + L +    G + R  +  G ++          RLD+EL+ I  M +  YFLIV DFI
Sbjct: 294  SWSYLNHLCREGFKTRYPEDDGTLS---------SRLDYELDTIRTMGYVDYFLIVWDFI 344

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+   I VGPGRGS AGSV +Y L IT+IDP+R++LLFERFLNP+R+SMPD DIDFC 
Sbjct: 345  NYARSQGIMVGPGRGSAAGSVVSYTLGITNIDPVRYNLLFERFLNPERVSMPDIDIDFCY 404

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YV  KYG ++V QI+TFG+L AK  +RDVGR L +PYS  D + K+IPND  
Sbjct: 405  ERRQEVIDYVVRKYGKDQVVQIVTFGTLAAKGVVRDVGRVLGLPYSMCDTIAKMIPNDLG 464

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  +   ++A   D  V  L+++S++LEGL RH S HAAG+VIG R + + VP
Sbjct: 465  MTLD-KALVMNPDLKKAYNEDQQVRNLIDMSKRLEGLPRHTSMHAAGVVIGSRSIDEFVP 523

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--GVKVDLSLIP 602
            + R        TQF M  IE+ GL+K DFLGL+TLT++Q ++  LA++  G+ +D+  I 
Sbjct: 524  LSR-ASDGTITTQFTMTTIEELGLLKMDFLGLRTLTVIQNAVR-LAEKDYGISIDVDHID 581

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            FDD +    + T  T G+FQLES+GM+  ++ ++ + +EDIIA +SLYRPGP+D I  Y 
Sbjct: 582  FDDKQVLESIGTGRTEGVFQLESAGMKSFMKELKAENLEDIIAGISLYRPGPMDFIPRYL 641

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              KN KE I    P ++ +L  T G I+YQEQVMQI + L+GY++  +D++RRAM KK  
Sbjct: 642  KGKNDKESITYECPQLEHILSPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSKKKT 701

Query: 723  EEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              M+K++  F        + G  KNGI +  A +I++ +  FA Y FNKSHAAAYAV+SY
Sbjct: 702  SVMEKERHNFVYGNEEEGVKGCVKNGIDEKTANHIYDEMIDFAKYAFNKSHAAAYAVVSY 761

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDN 833
            QTA++K +YP EF+AA MT  MDNV K  ++    R+   I ++PP +N     F V   
Sbjct: 762  QTAYLKYYYPREFMAALMTSVMDNVGKFSEYILTCRRMMGIPVLPPDINEGESGFSVSGE 821

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L+AIK VG      I+ E     PF S+EDF  R+  K++N+R LE+ + +GALD
Sbjct: 822  AIRYGLSAIKSVGKPVVDVILAERGKGGPFRSMEDFVGRMSMKEVNKRTLENFIKSGALD 881

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSV 950
                +R Q +     + +      K+      ++F  A E+     +IT       +   
Sbjct: 882  TLPGTRRQKMAVAPTMLEEKARERKSMFEGQLSLFDIAGEEARNEFQITFPDVGEYSKEE 941

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRK--------MGIKGYEESVATIRGNNIRLAAMVV 1002
                E+ +LG Y SGHPLD Y+   R+          +    E      G+ + +  MV 
Sbjct: 942  LLAFEKEILGVYISGHPLDDYEEAWRRNITATSADFMVDEETEKAGVQDGSRVVIGGMVA 1001

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K  K TR    + ++T  +     E   FP
Sbjct: 1002 GKTVKTTRTNQLMAFITLEDLMGSVEVIVFP 1032


>gi|302385506|ref|YP_003821328.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
 gi|302196134|gb|ADL03705.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
          Length = 1160

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 380/1055 (36%), Positives = 586/1055 (55%), Gaps = 56/1055 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +  ++ +       ++AITD   ++  ++F + A   GI+P
Sbjct: 2    AFTHLHVHTEYSLLDGSCKIKELVARAKELGMDSMAITDHGVMYGVIDFYRAAREVGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +           G         +VLL    +GYQ L+++VS+ ++ D      
Sbjct: 62   IIGCEVYVTSGSRFDRETAGGED--RYYHLVLLAENNQGYQNLMKIVSKGFV-DGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L+E  +EG+I L+   +G + R       +   +  L ++++FG +  ++ LQ 
Sbjct: 119  RVDYEVLREY-SEGIIALSACLAGEVQRLVSRGLYEKGMEAALRYQEIFGKENFFLELQD 177

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +   +Q ++++++   + LVATN+  +   ED   HD+L+ +     V+ ++R R
Sbjct: 178  HGIPAQNTVNQGLLRMSHETGIQLVATNDIHYTYAEDATPHDILLCIQTGKKVADENRMR 237

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y K+  EM ++FS   EA++NT  IA RC+  ++     LP++     D  +  
Sbjct: 238  YEGGQYYCKSEDEMRTLFSYAGEAIDNTHRIAERCNVEIEFGVTKLPKY-----DVPEGY 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFI 364
            +     NK        L      + Y   D   ++RLD+EL+VI  M +  YFLIV DFI
Sbjct: 293  DSWSYLNK--------LCLDGFHRHYPLDDGTLKERLDYELDVIHSMGYVDYFLIVWDFI 344

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+  +I VGPGRGS AGS+ +Y L IT+IDP+R++LLFERFLNP+R+SMPD D+DFC 
Sbjct: 345  HYARSQDIIVGPGRGSAAGSIVSYCLGITNIDPIRYNLLFERFLNPERISMPDIDVDFCF 404

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YV  KYG ++V QI+TFG+L AK  +RDVGR L M Y++ D + K+IP D  
Sbjct: 405  ERRQEVIDYVVQKYGKDQVVQIVTFGTLAAKGVVRDVGRVLDMSYARCDSIAKMIPGDLG 464

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+      R A   DP V  L+++S +LEGL RH S HAAG+VI    + + VP
Sbjct: 465  MTLE-KALRQSPDLRNAYEGDPEVKYLIDMSMRLEGLPRHTSMHAAGVVISRTSVDEYVP 523

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            + R     +  TQF M  +E+ GL+K DFLGL+TLT++Q ++  + + R + +D+  I +
Sbjct: 524  LSRAADGTI-TTQFPMTTLEELGLLKMDFLGLRTLTVIQNAVKAIEKNRNLSLDMDRIDY 582

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D      + T    G+FQLESSGM+  ++ ++P+ +EDIIA +SLYRPGP+D I  Y  
Sbjct: 583  NDKAVLDSIGTGRDDGVFQLESSGMKSFMKELKPESLEDIIAGISLYRPGPMDFIPKYLK 642

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             KN +  I      ++P+L  T G I+YQEQVMQI + L+GY++  +D++RRAM KK   
Sbjct: 643  GKNDRSSITYECKQLEPILNPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSKKKTY 702

Query: 724  EMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
             M+K+++ F        ++G   NGI + IA  I++ +  FA Y FNKSHAAAYAV+SYQ
Sbjct: 703  VMEKERQNFVYGNPEEEVTGCISNGIDEKIANQIYDEMIDFAKYAFNKSHAAAYAVVSYQ 762

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K +YP EF+AA +T  MDNV K+ ++    RQ  I I+PP +N     F V    I
Sbjct: 763  TAFLKYYYPEEFMAALLTSVMDNVSKVSEYILSCRQMGIPILPPDINEGESGFSVSGRSI 822

Query: 836  YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y L+AIK VG +    I+ E   +  F  +EDF  R+ +K++N+R LE+ + +GALD  
Sbjct: 823  RYGLSAIKSVGKSVVELIVAEREQNGLFHDMEDFIDRMSNKEVNKRTLENFIKSGALDTL 882

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--------AHEKGTFSDKITLEKFSVE 946
              +R Q L +   + +      KN       +F         H + TF D   + +F  E
Sbjct: 883  PGTRKQKLLTAPELLEQRSKERKNTMEGQMTLFDIAGEEEKTHFQVTFPD---VGEFLKE 939

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLA 998
            +  + FE E   LG Y SGHP++ Y+   R        E V            G+ + + 
Sbjct: 940  D-LLAFEKE--TLGIYLSGHPMEAYETTWRNHITATTIEFVVDEETGKAGVPDGSYVTVG 996

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             M+  K  K TR    + ++T  + A   E   FP
Sbjct: 997  GMITGKTVKTTRNNKMMAFITLEDLAGAVEVIVFP 1031


>gi|291544638|emb|CBL17747.1| DNA polymerase III catalytic subunit, DnaE type [Ruminococcus sp.
            18P13]
          Length = 1161

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 374/1043 (35%), Positives = 591/1043 (56%), Gaps = 39/1043 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL VH+ YSLL+GA  +  ++ +I    Q A+AITD   ++ A+EF Q A  AGI+
Sbjct: 2    PDFVHLHVHTEYSLLDGACRIQQLIQRIKELGQTAVAITDHGCMYGAVEFWQAAKEAGIK 61

Query: 69   PIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGC++ +  +  + K+     +P+     +VLL     GYQ LI+LVS  Y+ +    
Sbjct: 62   PIIGCEVYVAPRSRHDKVHRLDTSPY----HLVLLCRNQTGYQNLIKLVSLGYI-EGFYN 116

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              R+ L  L++   EGLI L+   +G I R         A++  L ++++FG D  Y+ +
Sbjct: 117  KPRVDLELLEQY-HEGLICLSACLAGEIPRRLVNGDYAGAKEAALRYRQIFGADSYYLEV 175

Query: 187  QRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQK 243
            Q H G    +    Q+ +L+    +PLVATN++ +++ ED     VL+ +  + TV    
Sbjct: 176  QDH-GIREQKTILPQLYRLSRETGIPLVATNDAHYITREDASLQHVLLCIQTNKTVEDPT 234

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                 T + Y+K+ +EM  +FS +P+A+ NTV IA +C+         LP F      D 
Sbjct: 235  GMGFETDEFYVKSGAEMAELFSAVPDAISNTVRIAEQCNVEFTFGQLKLPAFQMDGVTDT 294

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                ++  R     GL  R  +        A + R+R+ +EL VI +M +  YFLIV DF
Sbjct: 295  TAFFQHLCRE----GLHRRYGEDP------APEIRERMQYELRVIQQMGYVDYFLIVWDF 344

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++A++  +PVGPGRGSGAGS+ AY + IT IDP+R+ LLFERFLNP+R+SMPDFDIDFC
Sbjct: 345  IRYARQIGVPVGPGRGSGAGSLCAYCIGITGIDPMRYHLLFERFLNPERVSMPDFDIDFC 404

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + R  VI YV  KYG +RVAQII F +++A+AA+RD GRA+ +PY   DR+ KLIP + 
Sbjct: 405  IEGRQRVIDYVIEKYGSDRVAQIIAFDTMKARAAVRDTGRAMALPYGLCDRVAKLIPGEL 464

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++  A+       E    D  V +LL+++Q+LEG+ RHA+THAAG+VI   P+S+ V
Sbjct: 465  NMTIA-GAMKVSKELTELYDTDSRVHKLLDMAQRLEGMPRHATTHAAGVVIASAPVSEFV 523

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+ ++  S   VTQ+ M  +E+ GL+K DFLGL+ LT+++ +   + Q      +  IP 
Sbjct: 524  PLQKNEESI--VTQYPMTTLEQLGLLKMDFLGLRNLTVIRDACRAIQQLEPDFRIDQIPL 581

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD   Y +++   T G+FQ ES+GM++ L  ++P C+ED+IA++SLYRPGP+++I  Y  
Sbjct: 582  DDPAVYRMMSQGKTGGVFQFESAGMQRVLTKLEPTCMEDLIAVISLYRPGPMESIPRYIR 641

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             ++  E+I   HPL+ P+L+ T G ++YQEQVM+I + L+GYS   AD++RRAM KK  +
Sbjct: 642  NRHAPEQITYAHPLLKPILQVTYGCMVYQEQVMEICRSLAGYSYGRADLVRRAMAKKKHK 701

Query: 724  EMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             M+ +++ F+             GA  NG+ +  A  IF+ +  FA Y FNKSHAAAYA 
Sbjct: 702  VMEAERQTFLWGSRESDGTVSCPGAVANGVPEATANEIFDQMTSFASYAFNKSHAAAYAY 761

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K HY  +++AA MT  + N  K+ ++     ++ + +  P VN   + F VG
Sbjct: 762  LAYQTAYLKCHYFPQYMAALMTSVLSNTPKLMEYIALCEEYGMAVCRPDVNVSDMGFTVG 821

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I++ L A+KG+G      +++   +   + S  DFC R+    + +R +++L+  GA
Sbjct: 822  SKGIHFGLLAVKGLGKGVISQVIQERQEHGLYHSFLDFCERMVQLDVGKRTVDNLIRCGA 881

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            LD  G++R ++L   + I        +       ++F  +     + + + K      + 
Sbjct: 882  LDGLGHNRREMLMCYEQIMDAQAGSSRTLIQGQMDLFG-QGSAMPESVPIPKMEEFPPNQ 940

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                E+ + G Y SGHPL   +   + + +   +E      G  I +  M+ S +    R
Sbjct: 941  LLRMEKELTGMYLSGHPLGHLQWCRKLLRLPELKELQDEKDGTGISVLCMLQSVKPHVAR 1000

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
             G ++ ++T  + +   EA  FP
Sbjct: 1001 NGEKMCFLTLEDLSGTMEAVVFP 1023


>gi|183222285|ref|YP_001840281.1| DNA polymerase III subunit alpha [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912335|ref|YP_001963890.1| DNA-directed DNA polymerase subunit alpha [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167777011|gb|ABZ95312.1| DNA-directed DNA polymerase, alpha subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167780707|gb|ABZ99005.1| DNA polymerase III alpha subunit [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 1173

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 361/986 (36%), Positives = 567/986 (57%), Gaps = 38/986 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H++YS+L+GA+ +++++ ++      ++AITD  N++ A+EF ++A    ++PI
Sbjct: 12  FAHLHLHTTYSMLDGAIRISDLMKRVKELGMSSVAITDHGNMYGAIEFYKEAVKHEVKPI 71

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IGC+  +    + + T   +        I+LL     GYQ +I+L SR +  +   +  R
Sbjct: 72  IGCEFYVTPSRSAE-TELDEIADGGAYHIILLCKNEVGYQNIIKLASRSFT-EGFYRKPR 129

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
           I    L E  +EGL+ LT   +G ++R         A        ++F  +  Y+ +Q H
Sbjct: 130 IDYDLL-ERHSEGLVCLTACLAGEVNRKILEGKEDKAYALAGRLHEIFRKEDFYLEIQDH 188

Query: 190 RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              ++   ++ V+  +    +PLV TN+S FL+++D EA D+L+ +     +  + R   
Sbjct: 189 GIPEQKTVAEAVIGFSKRTGIPLVLTNDSHFLTKDDREAQDILLRIGMRKNIDDEMRFGF 248

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             + Y+K+  EM ++F +  +A  NT+ I  +CS   Q   P+LP F      D     E
Sbjct: 249 NQNFYVKSPEEMKTLFPNHLDAYYNTLAIRDKCSLNFQFGNPLLPPFEVPPGFDTDSYLE 308

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                        +L    I + Y       ++R +FE+  I  M F+GYFLIV D+I +
Sbjct: 309 -------------KLVWEGIQEKYKEITPIVKERTEFEMQTIRNMHFAGYFLIVQDYINF 355

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A++  IPVGPGRGS AGS+ AYAL IT++DP+R++LLFERFLNPDR  MPD D DFC +R
Sbjct: 356 ARRTGIPVGPGRGSAAGSIIAYALGITNVDPIRYNLLFERFLNPDRKDMPDIDTDFCVER 415

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EVI Y++++YG  RV QIITFGSL AKAA++DV R   +P+S+V+ + KL P      
Sbjct: 416 REEVINYIKHRYGENRVGQIITFGSLAAKAAIKDVARVFNVPFSEVNEMSKLFPKKLG-- 473

Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
           +++Q   + S+  R+         ++  I+QKLEG YR    HAAG+VI    L ++VP+
Sbjct: 474 ITIQEAVETSKDLRDIAEKSELNKKVFSIAQKLEGNYRQVGRHAAGVVIAPTALEEIVPL 533

Query: 546 Y------RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
                  RD RS   VTQ++    E+ GLIK D LGLK LT +  +   + +R G+ +DL
Sbjct: 534 STVSEPGRDGRS--IVTQYDKNMSEQVGLIKMDILGLKNLTTIHHATKLIEKRHGILIDL 591

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLE-SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
             IP DD  T+ LL     LGIFQL+ SSG+R      Q    E+I AL++LYRPGP+ +
Sbjct: 592 DKIPLDDPATFSLLRKANVLGIFQLDSSSGIRDLFAKAQVQKFEEIAALLALYRPGPMGS 651

Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            ++  Y +RKNGK+K+V  H  +  +L ET GVI+YQEQVM I++++ G+S+ ++DVLR+
Sbjct: 652 GMLDDYLDRKNGKKKVVFPHESLAEVLGETYGVIVYQEQVMGISRIMGGFSVGDSDVLRK 711

Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
           AM KK K ++   KE+F+ GA +  I++ +A  +FE L KF +YGFNKSH+ AYA ++YQ
Sbjct: 712 AMAKKDKSKLPALKEKFVKGAIEKKINEKLATELFEQLEKFGEYGFNKSHSVAYAFVTYQ 771

Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834
           TA++K +Y +E+L A ++ +   +  + K+  +A++  I+I+ P V    + F++ D+  
Sbjct: 772 TAFLKANYSIEYLTALLSGDHSKITDVVKYINNAKEMGIRILGPDVKESGISFEITDDTT 831

Query: 835 IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
           + + L++IKGVG   A++I+    +   +  L DF  ++D++  N++VLESL   GA D 
Sbjct: 832 VRFGLSSIKGVGELAAQNIIHNRNELGGYKQLSDFTKKLDTRLANKKVLESLAQGGAFDS 891

Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE-NSSVRF 952
           FGYSR  + +S D I  YA   +        ++F    G   + + L K  +E N     
Sbjct: 892 FGYSRKTISESTDIILNYANKKQAEEKEGQFSLFGGVNGGSEENLNLPKDGIEWNDDELL 951

Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKM 978
             E+   G Y SGHPLD +   L+ +
Sbjct: 952 RREKETTGLYLSGHPLDKFTEQLKSL 977


>gi|322378547|ref|ZP_08052994.1| DNA polymerase III subunit alpha [Helicobacter suis HS1]
 gi|321149024|gb|EFX43477.1| DNA polymerase III subunit alpha [Helicobacter suis HS1]
          Length = 1212

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 385/1018 (37%), Positives = 590/1018 (57%), Gaps = 77/1018 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL +H+ YSLL+GA  +  +  KI      +++++D  N+F A++F       GI+P
Sbjct: 18   NFTHLHLHTEYSLLDGANKIKVLAKKIKELGMESVSMSDHGNMFGAIDFYTCMKKEGIKP 77

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  I    NL    Q K  F     + L     EGY  L+ L S+ +L  +G    
Sbjct: 78   IIGMEAYIHNSTNLG-DKQSKQRF----HLCLYAKDLEGYHNLMYLSSQAFL--EGFYYF 130

Query: 130  -RICLSWLQEIGTEGLIMLTGGSSGPIDRAF--------------FFNSSQVAEKRLLTF 174
             RI    L+E   +GLI  +    G I+                 +  + +VAE+    +
Sbjct: 131  PRINKKLLKE-RCKGLICSSACLQGEINWHLNTLSEKNKKYGAKGYDEAKRVAEE----Y 185

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            + +FG+  Y+ + RH   ++ + E Q+++L+    + L+ATN++ + ++ED  A ++ M 
Sbjct: 186  QSIFGEDFYMEIMRHGIANQLFIEDQILKLSLETGIKLIATNDTHYTNQEDASAQEIAMC 245

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----H 288
            VA    ++   R R +  + Y+K+ ++M  +F+D+PEALENT EIA++C   + +    +
Sbjct: 246  VAMGKTLNDPTRLRHSVHEFYIKSPAQMAKLFADIPEALENTQEIAQKCQLEIDLKDESN 305

Query: 289  APILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
             P  PRF         E  DI KE+     +KA  GL+ RL    I +  HA+ Y +RL+
Sbjct: 306  PPTPPRFKFTQEYALSEGLDI-KEDAPYFAHKAREGLKKRLEMVDIKE--HAR-YEERLE 361

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +E+ VI  M+F+GY LIV DF+++A++NNIPVGPGRGS AGS+ A+ L ITDIDPL++ L
Sbjct: 362  YEIKVITDMRFAGYMLIVWDFVRYARENNIPVGPGRGSAAGSLVAFCLQITDIDPLKYDL 421

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E++ Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 422  LFERFLNPERVSMPDIDTDFCQRRRGEMLDYMIAKYGKYNVAQVITFNKMLAKGVIRDVA 481

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ------ 516
            R L MPY + D + KLIPN     ++LQ         EA   +P +  LL+ S       
Sbjct: 482  RVLDMPYKEADEMAKLIPNRLG--ITLQ---------EAYDLEPKIQTLLQTSTLAKEVW 530

Query: 517  ----KLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
                +LE L R A  HAA +V+  +R L    P+Y   R+   VTQ++MK++E   LIKF
Sbjct: 531  DFSLRLENLNRSAGKHAAALVVDSERELWYKTPLYTSERTGGIVTQYSMKYLEAIDLIKF 590

Query: 572  DFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            DFLGLKTLT++  +L+ + +    K+D   +  DD + Y  +    T+GIFQ+E SGM Q
Sbjct: 591  DFLGLKTLTVIHDALNIIKKYSHEKIDFLRVDMDDPKVYATIQEGNTVGIFQIE-SGMFQ 649

Query: 631  AL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQG 687
             L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G   I  +   ++P+L+ T G
Sbjct: 650  TLNKRLRPSRFEDIIAIIALGRPGPMESGMVDDFVNRKHGSAPITYMFDALEPILRPTYG 709

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
             IIYQEQVMQI Q ++G+SL EAD++RRAMGKK  + M   + +F+ GA K G     A 
Sbjct: 710  TIIYQEQVMQIVQTIAGFSLGEADLIRRAMGKKDAQIMADNRAKFVEGAEKKGFDCNKAG 769

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             +F+L+ KFA YGFNKSH+AAYA++++QTA++KTHY   F+AA ++ E  +++ +  + +
Sbjct: 770  ELFDLIVKFAGYGFNKSHSAAYAMLTFQTAYLKTHYKHAFMAAMLSSECRHIDSVAYYVE 829

Query: 808  DARQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPF 862
            +A    I+I  P VN   V F+V    G+  I + L AIKG G      ++E       F
Sbjct: 830  EANSMGIEIKRPHVNVSDVQFRVQDENGEKVIIFGLEAIKGAGEGPLGMLVELREKYGKF 889

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
              LED  S++D  K ++R+LE L+ +G+LD  GY+R  +L++LD I +  +  +K+    
Sbjct: 890  KDLEDLISKIDFSKFSKRILEPLIKSGSLDNLGYNRKTMLENLDLICEEGRRKDKSNAQM 949

Query: 923  HENIFAHEKGTFSDK--ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
               +FA+      +K  +TL+ +   + S   + E   +G YFSGHPLD +K  ++ +
Sbjct: 950  SGGLFANLSTEDQEKAHLTLKIYDEYDDSTLLDFEYECMGLYFSGHPLDAFKDQIKAL 1007


>gi|322379743|ref|ZP_08054053.1| DNA polymerase III subunit alpha [Helicobacter suis HS5]
 gi|321147814|gb|EFX42404.1| DNA polymerase III subunit alpha [Helicobacter suis HS5]
          Length = 1212

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 385/1017 (37%), Positives = 589/1017 (57%), Gaps = 77/1017 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  +  +  KI      +++++D  N+F A++F       GI+PI
Sbjct: 19   FTHLHLHTEYSLLDGANKIKVLAKKIKELGMESVSMSDHGNMFGAIDFYTCMKKEGIKPI 78

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129
            IG +  I    NL    Q K  F     + L     EGY  L+ L S+ +L  +G     
Sbjct: 79   IGMEAYIHNSTNLG-DKQSKQRF----HLCLYAKDLEGYHNLMYLSSQAFL--EGFYYFP 131

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAF--------------FFNSSQVAEKRLLTFK 175
            RI    L+E   +GLI  +    G I+                 +  + +VAE+    ++
Sbjct: 132  RINKKLLKE-RCKGLICSSACLQGEINWHLNTLSEKNKKYGAKGYDEAKRVAEE----YQ 186

Query: 176  KLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
             +FG+  Y+ + RH   ++ + E Q+++L+    + L+ATN++ + ++ED  A ++ M V
Sbjct: 187  SIFGEDFYMEIMRHGIANQLFIEDQILKLSLETGIKLIATNDTHYTNQEDASAQEIAMCV 246

Query: 235  AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----HA 289
            A    ++   R R +  + Y+K+ ++M  +F+D+PEALENT EIA++C   + +    + 
Sbjct: 247  AMGKTLNDPTRLRHSVHEFYIKSPAQMAKLFADIPEALENTQEIAQKCQLEIDLKDESNP 306

Query: 290  PILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            P  PRF         E  DI KE+     +KA  GL+ RL    I +  HA+ Y +RL++
Sbjct: 307  PTPPRFKFTQEYALSEGLDI-KEDAPYFAHKAREGLKKRLEMVDIKE--HAR-YEERLEY 362

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            E+ VI  M+F+GY LIV DF+++A++NNIPVGPGRGS AGS+ A+ L ITDIDPL++ LL
Sbjct: 363  EIKVITDMRFAGYMLIVWDFVRYARENNIPVGPGRGSAAGSLVAFCLQITDIDPLKYDLL 422

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R+SMPD D DFCQ RR E++ Y+  KYG   VAQ+ITF  + AK  +RDV R
Sbjct: 423  FERFLNPERVSMPDIDTDFCQRRRGEMLDYMIAKYGKYNVAQVITFNKMLAKGVIRDVAR 482

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ------- 516
             L MPY + D + KLIPN     ++LQ         EA   +P +  LL+ S        
Sbjct: 483  VLDMPYKEADEMAKLIPNRLG--ITLQ---------EAYDLEPKIQTLLQTSTLAKEVWD 531

Query: 517  ---KLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
               +LE L R A  HAA +V+  +R L    P+Y   R+   VTQ++MK++E   LIKFD
Sbjct: 532  FSLRLENLNRSAGKHAAALVVDSERELWYKTPLYTSERTGGIVTQYSMKYLEAIDLIKFD 591

Query: 573  FLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L+ + +    K+D   +  DD + Y  +    T+GIFQ+E SGM Q 
Sbjct: 592  FLGLKTLTVIHDALNIIKKYSHEKIDFLRVDMDDPKVYATIQEGNTVGIFQIE-SGMFQT 650

Query: 632  L-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            L + ++P   EDIIA+++L RPGP+++ +V  + NRK+G   I  +   ++P+L+ T G 
Sbjct: 651  LNKRLRPSRFEDIIAIIALGRPGPMESGMVDDFVNRKHGSAPITYMFDALEPILRPTYGT 710

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            IIYQEQVMQI Q ++G+SL EAD++RRAMGKK  + M   + +F+ GA K G     A  
Sbjct: 711  IIYQEQVMQIVQTIAGFSLGEADLIRRAMGKKDAQIMADNRAKFVEGAEKKGFDCNKAGE 770

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            +F+L+ KFA YGFNKSH+AAYA++++QTA++KTHY   F+AA ++ E  +++ +  + ++
Sbjct: 771  LFDLIVKFAGYGFNKSHSAAYAMLTFQTAYLKTHYKHAFMAAMLSSECRHIDSVAYYVEE 830

Query: 809  ARQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFD 863
            A    I+I  P VN   V F+V    G+  I + L AIKG G      ++E       F 
Sbjct: 831  ANSMGIEIKRPHVNVSDVQFRVQDQEGERVIIFGLEAIKGAGEGPLGMLVELREKYGKFK 890

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
             LED  S++D  K ++R+LE L+ +G+LD  GY+R  +L++LD I +  +  +K+     
Sbjct: 891  DLEDLISKIDFSKFSKRILEPLIKSGSLDNLGYNRRTMLENLDLICEEGRRKDKSNAQMS 950

Query: 924  ENIFAHEKGTFSDK--ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
              +FA+      +K  +TL+ +   + S   + E   +G YFSGHPLD +K  ++ +
Sbjct: 951  GGLFANLSTEDQEKAHLTLKIYDEYDDSTLLDFEYECMGLYFSGHPLDAFKDQIKAL 1007


>gi|288553705|ref|YP_003425640.1| DNA polymerase III subunit alpha [Bacillus pseudofirmus OF4]
 gi|288544865|gb|ADC48748.1| DNA polymerase III alpha subunit [Bacillus pseudofirmus OF4]
          Length = 1117

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 381/1041 (36%), Positives = 597/1041 (57%), Gaps = 61/1041 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            + +H  V+S YSLL     +  ++ K       A+A+TD  N+F+A+ F +     GI+P
Sbjct: 2    NLLHTNVYSEYSLLSSTNRIKELVSKAKETGFTALALTDKGNMFAAVPFYKACLETGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG  L+I ++DN    + G        S+ LL     GY+ L+++ +    L Q + ++
Sbjct: 62   VIG--LEIPIKDN---EHSG--------SLRLLAKNTTGYKSLLKIST----LLQTEDNL 104

Query: 130  RICLSW--LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK---RLLTFKKLFGDRLYV 184
            R  L+   L+    + LI++   S  P+ +       + A++   R +T  K   +  Y+
Sbjct: 105  RAGLAPDDLRSRINDCLIIIPYDS--PMHQLIKAGEVEAAKEWCVRWITRSK--KEDWYI 160

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +L  +   + +    V Q A  + L L  +N   F S+E+YEA+  + A+     +  +D
Sbjct: 161  DLAGNADRESHHWEAVSQFASRYNLKLCGSNPVRFTSKENYEAYAAVRAIREGKTIHLQD 220

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                    YLK++ E+   FS +P AL    EI  +C+  + +    LP +        +
Sbjct: 221  EGHAERSFYLKSKEELKQSFSPVPAALSGLGEIVEQCNITIDLDRRYLPAY-----PFTK 275

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
             E   E+  KA         +GA  +  H    + R+RL+ EL VI +M F+ YFLIVAD
Sbjct: 276  SEPAKEVLKKACL-------EGANKRFNHTITDEVRRRLEKELAVIDQMGFNDYFLIVAD 328

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            F+Q A+K N+  GPGRGS AGS+TAY L ITD++PL++ LLFERFLNP+R+S+PD DIDF
Sbjct: 329  FMQHARKRNMMTGPGRGSAAGSLTAYVLYITDVNPLKYDLLFERFLNPERISLPDIDIDF 388

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RRDEVI+YVQ KYG + VAQI TFG+L A+AA+RD G+AL      ++++ KLIP+ 
Sbjct: 389  PDHRRDEVIQYVQEKYGPDHVAQIATFGTLAARAAIRDTGKALSCDSFLIEKVAKLIPST 448

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A+  +   ++ R      ++LL I++ +EGL RH STHAAG+VI   PL++L
Sbjct: 449  PGITIK-KAMEQERGLQQIRNDSEDANKLLSIAESIEGLMRHVSTHAAGVVISPVPLTEL 507

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
            V + +  +  + +TQ  M  +E  GL+KFDFLGL+ LTLL++ L  + Q  G +VD+  I
Sbjct: 508  VALQKG-QGPVRLTQATMGIVEDIGLVKFDFLGLRNLTLLERVLSIIEQESGRRVDIHSI 566

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P+DD +TY LL    T G+FQLES GMR+ L  + P   EDI+A+ +LYRPGP+D I VY
Sbjct: 567  PWDDVKTYELLANGDTTGVFQLESQGMRRVLRSLMPTEFEDIVAVNALYRPGPMDYIQVY 626

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             N K+ K  I  IH  + P+L +T GVI+YQEQ+MQIA  ++G+SL+ AD+LRRA+ KK 
Sbjct: 627  INGKHKKAPINDIHEELTPILGKTYGVIVYQEQIMQIAVKMAGFSLARADLLRRAISKKN 686

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K +++K +  F+ GA + G ++ IA  +F+L+ +FA+YGFN+SHA AY++ISYQ A++K 
Sbjct: 687  KADLEKSRGDFLKGAKEKGYNEDIANKVFQLIERFANYGFNRSHAVAYSMISYQLAYLKA 746

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD--NRIYYSL 839
            H+P  F  A ++   +  EK+ +  Q+ ++  I IMPPS++   + F + D  + + + L
Sbjct: 747  HFPTAFYTALLSSVWNTPEKLTELLQETKKRKIDIMPPSISKSGLLFTLEDHGHTVRFGL 806

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
              +  VG   A+HI++ + + P+  L D+C RV+ + +NRR  E+L+ AGA+D +G  R 
Sbjct: 807  LPVSHVGVQAAKHIIDTAREAPYKDLFDYCVRVNQRIVNRRATENLIKAGAMDEWGEDRA 866

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFS-VENSSV--RFENE 955
             LL +LD    +A+ V           F  E  G F+  I   ++  V+  S+  +   E
Sbjct: 867  TLLYNLDQAYSFAEKVLS---------FQDEMAGLFTLDIETPQYEHVDPLSLQEKLSFE 917

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN---IRLAAMVVSKQQKKTRKG 1012
            Q  LG Y SGHP++    +L K       + +   +G     +R+A MV S ++  T+KG
Sbjct: 918  QEALGVYVSGHPIEQVSDVLAKYQRVLIADMIQDQKGQERKRLRIAGMVSSLKKITTKKG 977

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + ++  ++ +   E   FP
Sbjct: 978  DPMAFLEAADESGHCEVVVFP 998


>gi|296436078|gb|ADH18252.1| DNA polymerase III subunit alpha [Chlamydia trachomatis G/9768]
 gi|296437006|gb|ADH19176.1| DNA polymerase III subunit alpha [Chlamydia trachomatis G/11222]
 gi|296437939|gb|ADH20100.1| DNA polymerase III subunit alpha [Chlamydia trachomatis G/11074]
 gi|297140439|gb|ADH97197.1| DNA polymerase III subunit alpha [Chlamydia trachomatis G/9301]
          Length = 1237

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 386/1059 (36%), Positives = 584/1059 (55%), Gaps = 68/1059 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+   + K    Q PA+A+TD  NLF A+EF +      I+P
Sbjct: 2    TWIPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +          + K+       ++LL    EGY+ L  L S  Y   +G   V
Sbjct: 62   IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT--EGFYYV 117

Query: 130  -RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q 
Sbjct: 118  PRIDRDLLSQ-HSKGLICLSACLSGSVAQAAL-ESEEDLEKDLLWYQDLFQEDFFSEVQL 175

Query: 189  HRG----------------YDRYRESQV----VQLAYTHEL--PLVATNNSLFLSEEDYE 226
            H+                 Y ++ E Q+      LA +  L  P VATN+  +L+ +D+ 
Sbjct: 176  HKSSEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWL 235

Query: 227  AHDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
            AH++L+ V           ++ + + K +   + + Y K+  E+  +F+  PE + NT  
Sbjct: 236  AHEILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEIAELFAAHPETITNTCI 295

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA--------- 327
            +A RC   L       P ++ +         E E    + A LE    QG          
Sbjct: 296  VAERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELL 355

Query: 328  --IAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
              IAK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSG
Sbjct: 356  GHIAKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSG 415

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            AGSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G +
Sbjct: 416  AGSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKD 475

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
             VAQIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S  A+  D   R+ 
Sbjct: 476  NVAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELRQL 533

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
             + D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK
Sbjct: 534  YVDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMK 593

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620
             +E  G++K DFLGLKTLT +  +   + ++ G+ +  + IP DD  T+ LL    T+GI
Sbjct: 594  PVESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGI 653

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ+ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P
Sbjct: 654  FQMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEP 713

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NG
Sbjct: 714  ILKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANG 773

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            I  +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E
Sbjct: 774  IDPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIE 833

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SAD 859
            K+ K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    +
Sbjct: 834  KVGKLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKN 893

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P+ SL+DF  R D KK+ ++ LE+LV AG  D F  ++   L  L+++       +K  
Sbjct: 894  GPYKSLQDFVQRADFKKVTKKQLENLVDAGTFDRFEPNKDLALAILNDLYDTFSREKKEA 953

Query: 920  TNKHENIFAHEKGTFSD-KITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILR 976
                   F+ +       KIT+   +V   S +   + E+ +LG Y + HP+D  + +L 
Sbjct: 954  ATGVLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLP 1013

Query: 977  KMGIKGYEESVATIRGNNIR-------LAAMVVSKQQKK 1008
             + +    +      G  IR       +   + S +QKK
Sbjct: 1014 FLSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKK 1052


>gi|225376830|ref|ZP_03754051.1| hypothetical protein ROSEINA2194_02472 [Roseburia inulinivorans DSM
            16841]
 gi|225211326|gb|EEG93680.1| hypothetical protein ROSEINA2194_02472 [Roseburia inulinivorans DSM
            16841]
          Length = 1170

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 384/1070 (35%), Positives = 603/1070 (56%), Gaps = 73/1070 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ +SLL+G+  +   + ++      + AITD   +F  ++F + A AAGI P
Sbjct: 2    AFTHLHVHTEFSLLDGSNKIKEYVARVKELGMNSAAITDHGVMFGVIDFYKAAKAAGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +    N +   +          +VLL    EGYQ L+++VS+ ++ D      
Sbjct: 62   ILGCEVYV--APNSRFDREAAHGEDRYYHLVLLAENNEGYQNLMKIVSKGFV-DGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDR----AFFFNSSQVAEKRLLTFKKLFGD-RLYV 184
            R+ +  LQ+  + G+I L+   +G + R      +  + +VAEK    ++  FG    ++
Sbjct: 119  RVDMEVLQQYHS-GIIALSACLAGEVQRYLVKGLYDEAKKVAEK----YENCFGKGNFFL 173

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ H   ++     Q+V+++    + LVATN+  +   ED EAHD+L+ +     +S +
Sbjct: 174  ELQDHGIPEQQMVNPQLVRMSQETGIELVATNDVHYTYAEDAEAHDILLCIQTGKKLSDE 233

Query: 244  DRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +R R     +Y+K+  EM  +FS   +A++NT +IA RC   ++     LP F   E  D
Sbjct: 234  NRMRYEGGQYYVKSEEEMRKLFSFASQAIDNTQKIADRCHVEIEFGVTKLPHFEVPEGYD 293

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGY--HAQDYRQRLDFELNVIARMKFSGYFLIV 360
                      NK        L    + K Y    ++   +LD+ELNVI +M +  YFLIV
Sbjct: 294  SWT-----YLNK--------LCHEGLVKRYPDRHEELLPKLDYELNVIRKMGYVDYFLIV 340

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI +A+ + IPVGPGRGS AGS+ +Y   IT+IDP++++LLFERFLNP+R++MPD DI
Sbjct: 341  WDFINYARTHGIPVGPGRGSAAGSLVSYTTGITNIDPIKYNLLFERFLNPERVTMPDIDI 400

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC +RR EVI YV  KYG + V+QI+TFG+L AK  +RDVGR + +PYS  D + K+IP
Sbjct: 401  DFCYERRSEVIDYVVKKYGKDCVSQIVTFGTLAAKGVIRDVGRVMDLPYSFCDTIAKMIP 460

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N+    +  +A+  +   R    +D +V  L+++S++LEGL RH S HAAG+VI  + + 
Sbjct: 461  NELNITIE-KALQMNPELRGMYESDENVRTLIDMSKRLEGLPRHTSMHAAGVVISQKAMD 519

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
            + VP+ R     +  TQF M  IE+ GL+K DFLGL+TLT+++ + D + +  G+K+D++
Sbjct: 520  EYVPLSRASDGTI-TTQFIMTTIEELGLLKMDFLGLRTLTVIKDAADLVYKNHGIKIDVN 578

Query: 600  LIPFDDH-------------ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             I ++DH             +    + T  T G+FQLES+GM+  ++ ++P  +ED+IA 
Sbjct: 579  HIDYNDHTDPDAVLIDYNDKKVLDYIGTGRTEGVFQLESAGMKNFMKELKPQSLEDVIAG 638

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            +SLYRPGP+D I  Y   KN ++ I      ++P+L+ T G I+YQEQVMQI Q L+GY+
Sbjct: 639  ISLYRPGPMDFIPKYIKGKNERDSITYECKELEPILEPTYGCIVYQEQVMQIVQELAGYT 698

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN--------IFELLAKFAD 758
            + +AD +RRAM KK +  +D +++ F+ G  + GI   IA +        I++ +  FA 
Sbjct: 699  MGQADNIRRAMSKKKQYVIDAERQNFVYGNEEQGIKGCIANDISEQAANKIYDSMVDFAK 758

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            Y FNKSHAAAYAV+SYQTA+ K +YPVEF+AA MT  +DN  K+ ++    RQ  I+++P
Sbjct: 759  YAFNKSHAAAYAVVSYQTAYFKYYYPVEFMAALMTSVIDNTRKVSEYIFTCRQMGIKVLP 818

Query: 819  PSVNT-PCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKK 876
            P VN    V   VGDN I Y L AIK +G      I+ E   +  + +L+ F  RV  ++
Sbjct: 819  PDVNEGEGVFTAVGDN-IRYGLYAIKSIGRPVVDLILQEREENGTYKTLQSFLERVSCRE 877

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKG 932
            +N+R +E+L+ AGALD    +R Q++     I       +K   +    +F      EK 
Sbjct: 878  VNKRAVENLIKAGALDGLDGNRQQMITVFSTIMDNLASEKKKSMSGQMTLFDLVPEEEKK 937

Query: 933  TFSDKI-TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-------GIKGYE 984
             +  ++  LE++S E   ++   E+ VLG Y +GHPL+ Y+   RK         +   E
Sbjct: 938  DYEIRLPQLEEYSKE---IKLGFEKEVLGIYLTGHPLEEYEERWRKNISAVTTDFVLDEE 994

Query: 985  ESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +   ++ N  + +  M+  K  K T+    + ++T  +     E   FP
Sbjct: 995  TNEVKVKDNQKVTVGGMITEKTVKYTKNNKVMAFLTLEDLVGTVEVIVFP 1044


>gi|291561482|emb|CBL40281.1| DNA polymerase III catalytic subunit, DnaE type [butyrate-producing
           bacterium SS3/4]
          Length = 1159

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 384/991 (38%), Positives = 569/991 (57%), Gaps = 48/991 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +F HL VH+ YSLL+G+  +  +  +       ++AITD   ++  ++F + A AAG++P
Sbjct: 2   AFTHLHVHTEYSLLDGSSKIGELAARAKELGMDSMAITDHGVMYGVIDFYRAARAAGVKP 61

Query: 70  IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IIGC++ +       + T  G+  +     +VLL     GYQ L+++VS+ ++ D     
Sbjct: 62  IIGCEVYVSPGSRFDRETVHGEDRYY---HLVLLAENNTGYQNLMKIVSKGFV-DGFYYK 117

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAF---FFNSSQVAEKRLLTFKKLFGDRLY-V 184
            RI    ++E   EG+I L+   +G + R      +  ++ A KR L   ++FG+  Y +
Sbjct: 118 PRIDEEVMREY-HEGIIALSACLAGEVPRYLEKGLYEDAKAAAKRHL---EIFGEGNYFL 173

Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            LQ H     R     +++L+    +PLVATN+  +++ ED+EAHD+L+ +     VS +
Sbjct: 174 ELQDHGIPMQRQVNQGIMRLSKELNIPLVATNDCHYINAEDWEAHDILLCIQTGKKVSDE 233

Query: 244 DRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           +R R     +Y+K+  EM  +F   PEA+ENT +IA RC+  ++     LPRF   E  D
Sbjct: 234 NRMRYEGGQYYVKSEEEMRRLFPYAPEAIENTHKIAERCNVEIEFGVTKLPRFDVPEGYD 293

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIV 360
                          G    L     A  Y   D   R RLD+EL  I  M +  YFLIV
Sbjct: 294 -------------SWGYLNHLCDEGFAMRYPNDDGTLRARLDYELGTIKSMGYVDYFLIV 340

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            DFI +AK + I VGPGRGS AGS+ AY L ITDIDP+R+ LLFERFLNP+R+SMPD D+
Sbjct: 341 WDFINFAKSHGIAVGPGRGSAAGSIVAYCLKITDIDPIRYQLLFERFLNPERVSMPDIDV 400

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DFC +RR EVI YV  KYG ++VAQI+TFG+L A+  +RDVGR + +PYS  D++ K++P
Sbjct: 401 DFCYERRQEVIDYVVEKYGKDQVAQIVTFGTLAARGVIRDVGRVMDLPYSLCDQVSKMVP 460

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +    + L A+  +   +    +D  V +L+++S++LEGL RH S HAAG+VI    + 
Sbjct: 461 AELNITLDL-ALRKNPELKALYDSDEQVRKLIDMSKRLEGLPRHTSMHAAGVVISRTSID 519

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
           + VP+ R     + VTQF M  +E+ GL+K DFLGL+TLT++Q ++  + +  GV +DL 
Sbjct: 520 EYVPLSRGADGTI-VTQFTMTTLEELGLLKMDFLGLRTLTVIQDAVKMIKKDHGVDLDLE 578

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            I +DD +    L T    G+FQLES G +  ++ ++P  +EDIIA +SLYRPGP+D I 
Sbjct: 579 HIDYDDKKVMDSLGTGKNEGVFQLESGGFKTFMKELKPTTLEDIIAGISLYRPGPMDFIP 638

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            Y   KN  E I    P ++P+LK T G I+YQEQVMQI + L+GY+L  +D++RRAM K
Sbjct: 639 KYLKGKNDPESITYTCPQLEPILKPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSK 698

Query: 720 KIKEEMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           K    M K+++ F+ G  +        NGI +  A  I++ +  FA Y FNKSHAAAYAV
Sbjct: 699 KKAAVMAKERQNFVYGNEEEGVKGCIANGIDEKTANQIYDDMTDFAKYAFNKSHAAAYAV 758

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
           ++YQTA++K +YP EF+AA MT  MDN  K+ ++    R   I I+PP +N     F V 
Sbjct: 759 VAYQTAFLKYYYPKEFMAALMTSVMDNTTKVSEYILACRNMGIPILPPDINEGYSGFSVS 818

Query: 832 DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            N I Y L+AIK VG      I+ E  +   F +L+DF SR+ +K++N+R LES + +GA
Sbjct: 819 GNGIRYGLSAIKSVGRAVVDVIIAERESGGLFKNLDDFVSRMSNKEVNKRTLESFIKSGA 878

Query: 891 LDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
           LD    +R Q L      L++  K  + V + + +  +     EK  F   IT       
Sbjct: 879 LDTLPGTRKQKLIVSGDLLESKSKEKKTVMEGQMSFFDIAPEEEKDNFH--ITFPDVGEY 936

Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
           +       E+  +G Y SGHP++ Y+ +  K
Sbjct: 937 DKQTLLAFEKETIGIYVSGHPMEEYRELWEK 967


>gi|291550544|emb|CBL26806.1| DNA polymerase III catalytic subunit, DnaE type [Ruminococcus torques
            L2-14]
          Length = 1157

 Score =  632 bits (1630), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 375/1047 (35%), Positives = 593/1047 (56%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ +SLL+G+  +   + ++      + AITD   ++  ++F ++A   GI P
Sbjct: 2    SFAHLHVHTEFSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYREAKKQGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +    N +   +          +VLL    EGY  L ++VS+ ++ +      
Sbjct: 62   ILGCEVYV--APNSRFDREITGGDDRYYHLVLLAENEEGYANLTKIVSKGFV-EGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L++   +G+I L+   +G + R       + A+K  L ++++FG+   ++ LQ 
Sbjct: 119  RVDKELLRKY-HKGIIALSACLAGEVARFLTKGLYEEAKKTALEYQEIFGEGNFFLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     Q+ +++    + LVATN+  +   ED + HD+L+ +     +S ++R R
Sbjct: 178  HGIPEQGLVNQQLFKMSEETGIELVATNDIHYTYAEDAKPHDILLCIQTGKKLSDENRMR 237

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM+ +F    +ALENT +IA RC   ++     LP++   +  D    
Sbjct: 238  YDGGQYYVKSEEEMLRLFPYAKQALENTQKIADRCHVEIEFGVTKLPKY---DVPDGYTS 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E  L+     GLE R        G  +++ ++RL +EL  I +M +  YFLIV DFI++
Sbjct: 295  WEY-LQKLCYEGLEKRY-------GDPSEELKERLSYELETIHQMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + I VGPGRGS AGS+ +Y L IT IDP+R+ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  AKDHGISVGPGRGSAAGSIVSYCLEITTIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG + VAQI+TFG+L A+  +RDVGR + +PY+ VD + K+IP +    
Sbjct: 407  RQEVIDYVTRKYGKDCVAQIVTFGTLAARGVIRDVGRVMDLPYAYVDSISKMIPQELGIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   ++    D +V  L++++++LEGL RH S HAAG+VI  +P+ + VP+ 
Sbjct: 467  ID-KALKMNPDLKKLYDTDETVTNLIDMAKRLEGLPRHCSMHAAGVVICQKPVDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            R     +  TQF M  +E+ GL+K DFLGL+TLT++Q ++    ++  +++++ I ++D 
Sbjct: 526  RAADGTI-TTQFIMTTLEELGLLKMDFLGLRTLTVIQNAVLLARRKQPELNINQIDYNDQ 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +    + T  T G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   KN
Sbjct: 585  KVLDYIGTGKTDGVFQLESAGMKGFMKELKPHNLEDVIAGISLYRPGPMDFIPQYIRGKN 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                I    P ++P+L  T G I+YQEQVMQI + L+GYSL  +D+LRRAM KK    M+
Sbjct: 645  DSSSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMSKKKAAVME 704

Query: 727  KQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+++ FI         G  KNGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTAW
Sbjct: 705  KERKIFIYGDEETGVPGCIKNGIDEQTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTAW 764

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K ++PVE++AA MT  +DN  K+ ++    RQ NI+I+PP +N    +F V    I Y 
Sbjct: 765  LKYYFPVEYMAALMTSVIDNPSKVSEYIYACRQMNIKILPPDINKGEANFSVDGGDIRYG 824

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK-LNRRVLESLVFAGALDCFGY 896
            LAAIK +G    + I+E   +   F +LEDF +R+ +K  LN+R +E+L+ AGALD  G 
Sbjct: 825  LAAIKSIGRPVIKAIVEDREELGLFQNLEDFITRLSAKNILNKRTIENLIKAGALDTLGG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I  +    +KN       +F    E      +I +      +       
Sbjct: 885  TRKQFMSIYVQIVDHVTQEKKNSMVGQMTLFDLVSEDQKEEFQIRMPDVGEYSKETLLAF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIRGNNIR--LAAMVVSKQQ 1006
            E+ VLG Y SGHPL+ Y+   +K         +  EE+  T   +  +  +  M+  K  
Sbjct: 945  EKEVLGIYVSGHPLEAYEEKWKKSISATTADFQLDEETGHTKVHDGAKEIIGGMITEKTI 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + ++T  +     E   FP
Sbjct: 1005 KHTKTNQMMAFITVEDLLGTVEVVVFP 1031


>gi|226226143|ref|YP_002760249.1| DNA polymerase III alpha subunit [Gemmatimonas aurantiaca T-27]
 gi|226089334|dbj|BAH37779.1| DNA polymerase III alpha subunit [Gemmatimonas aurantiaca T-27]
          Length = 1165

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 387/1052 (36%), Positives = 576/1052 (54%), Gaps = 47/1052 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  HS YSLL+GA  +++++ +    + PA+AITD  N+ +A EF +KA  AGI+P
Sbjct: 2    SFVHLHCHSEYSLLDGANRIDDLIKRAQHFEMPALAITDHGNMHAAWEFQEKARKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+G +  +   D      Q   P P V     +VLL     GY+ L++L S  Y  +   
Sbjct: 62   ILGMEAYVAPGDR----RQRGRPAPGVKPYYHLVLLARDIVGYRNLVKLTSLGYT-EGFY 116

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               RI    L +  +EGLI+ +   +G +      +    A +    + +LF  R ++ +
Sbjct: 117  TKPRIDRELLAQY-SEGLIVSSACLAGEVASHLMEDRVDQAREAAAWYAELFKGRYHLEV 175

Query: 187  QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    +    ++++ LA    LP+VATN++ FL  ED++AHDVL+ +      + +DR
Sbjct: 176  QAHTSEGQAILNAKILSLADELSLPVVATNDAHFLKHEDHDAHDVLLCIGLGKDRNDRDR 235

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS--FILQVHAPILPRFIEKECDDI 303
             +     Y K   E+ + F    + L NT+ IA      F  + + P  P        + 
Sbjct: 236  MKYDDGLYFKAPDEIRTFFPGREDVLTNTLAIADAVDVQFAKKYYVPSFP------LPEG 289

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E + L   A  G + R      A      + ++RLD+EL VI +  ++GYFLI ADF
Sbjct: 290  VATENDMLVQIATDGAKERYGDPLPA------NVQERLDYELGVITKTGYAGYFLITADF 343

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+ A+   IPVGPGRGS AGS+ AYA  ITD+ PL F LLFERFLNP+R+SMPD D+DFC
Sbjct: 344  IKAARDRGIPVGPGRGSAAGSLVAYATRITDVCPLEFDLLFERFLNPERVSMPDVDVDFC 403

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR EVI YV+ KYG + V QI+TFG+++++AA++DVGR L    ++ D L KLIPN P
Sbjct: 404  FERRGEVIEYVRQKYGKDSVGQIVTFGTMKSRAAIKDVGRTLGFTPAETDALAKLIPNAP 463

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               +++ +AI      +     D    +LL+ + KLEGL RH   HAAG+VI   PL + 
Sbjct: 464  NFSLTVKEAIEQVPEVKAFYKNDERYRQLLDFAVKLEGLSRHTGVHAAGVVIAPGPLDEF 523

Query: 543  VPMYR--------DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-G 593
            VP+          D    + VTQ++M  +EKAG++K DFLGL TLT++  +L  + +R G
Sbjct: 524  VPICTQASKGAGGDGDERVIVTQYDMTALEKAGMLKMDFLGLTTLTVITDTLRNIKERLG 583

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              V L    F D +TY +L    T G+FQ ES      L+ M+ D  +D++A  +L RPG
Sbjct: 584  KDVVLEERGFTDEKTYQVLRAGRTGGVFQFESPLATDVLKRMRCDRFDDLVASNALLRPG 643

Query: 654  PIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D  +  VY  RK G+E  V   P ++P+L  T GVI YQEQVM+IAQ+L+G SL+EAD
Sbjct: 644  PLDAGMHNVYIRRKRGEEPTVYALPELEPILSNTYGVITYQEQVMRIAQVLAGISLAEAD 703

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            VLR+A+GKK  E + K+  +F   A   G SK I   +   +  F  YGFNKSH+ AY+V
Sbjct: 704  VLRKAVGKKDAELIKKELGKFTEKAIARGYSKKIIEELAGQIETFGRYGFNKSHSVAYSV 763

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            ++Y TA++KTHYP EF+AA ++  +   E++ K+  +AR+  I+++ P VN     F V 
Sbjct: 764  VAYHTAYLKTHYPAEFMAALLSSNIGKTEEVIKYIAEAREMGIEVLAPDVNESGWRFTVI 823

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            GD RI + L AI+ VG      ++ A  +  F +L D C RVD +  N+RV E+LV AGA
Sbjct: 824  GDKRIRFGLGAIRNVGKGAIDSLLAARTEGAFPTLHDLCGRVDLRLCNKRVFEALVAAGA 883

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--------AHEKGTFSDKITLEK 942
             D  G  R QLL +LD+    A   ++       ++F         +  G  +    L  
Sbjct: 884  CDTLGGHRAQLLGALDHAISEASLQQEEAERGQGSLFGDLMGDAPGNGGGNNAAPQMLPN 943

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             ++ + S R + E+ +LGFY SGHPL+ ++            + + T     + +  +V 
Sbjct: 944  IAMWSESERLQREKELLGFYISGHPLEPHRTECELFATSTVAK-LGTWTAEPVTIGVVVT 1002

Query: 1003 S-KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + ++Q   R G+    +T  + +   E   FP
Sbjct: 1003 AIRKQISKRTGAEFARLTVEDFSGSSEVLVFP 1034


>gi|108803937|ref|YP_643874.1| DNA polymerase III catalytic subunit, DnaE type [Rubrobacter
            xylanophilus DSM 9941]
 gi|108765180|gb|ABG04062.1| DNA polymerase III catalytic subunit, DnaE type [Rubrobacter
            xylanophilus DSM 9941]
          Length = 1165

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 380/1059 (35%), Positives = 588/1059 (55%), Gaps = 62/1059 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  F HL  HS YS+L+GA  + +++     +  P IA+TD  N++ A+ F Q+A  AGI
Sbjct: 5    SGEFAHLHCHSEYSMLDGASRIRDLVAFAREEGMPGIALTDHGNMYGAVRFYQEATKAGI 64

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +P++GC++ +  +    M+++ ++ +     + LL  T EGY+ L++L S    L     
Sbjct: 65   KPVMGCEVYV-TEWGTPMSDRSRSRYY---HLTLLARTPEGYKNLMKL-STAGFLHGFYY 119

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+    L+  G  G+I L+G  S  +           A + LL + ++F D +Y+ +Q
Sbjct: 120  KPRVDARTLRRHG-RGIICLSGCLSAEVPARILEGRLDRARELLLEYAEIF-DAVYLEMQ 177

Query: 188  RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++ R ++ +++L     LPLVATN+S + +  D   HDVL+ +      +  +R 
Sbjct: 178  DHGLEEQRRVNRGLLRLHRETGLPLVATNDSHYTARSDARMHDVLLCIGTGKFYNDPNRM 237

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFI-LQVHAPILPRFIEKECDDIQ 304
            R   +  Y+K   EM  +F+D PEALENT  + R      +++    LP F + E     
Sbjct: 238  RFHGEEFYVKPVEEMARLFADHPEALENTAGVVRSVEGPGIELGKTRLPNFPKPE----G 293

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  LR     GL  R  + A        + R+RLDFEL  IARM F  YFLIV DF+
Sbjct: 294  YTGSQYLRELCERGLRKRYGRRA-----SDPEVRRRLDFELETIARMGFEDYFLIVWDFV 348

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++AK   I VGPGRGS AGS+ AYAL ITD+DPL++SLLFERFLNPDR+SMPD DIDF  
Sbjct: 349  KYAKDRGIAVGPGRGSAAGSIVAYALEITDLDPLQYSLLFERFLNPDRISMPDVDIDFSV 408

Query: 425  DRRDEVIRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              R EV+RYV  KYG HE VAQIITFG++ AKAA+RD  R  Q PY++ D+L KLIP  P
Sbjct: 409  AGRSEVMRYVTEKYGGHEHVAQIITFGTIGAKAAIRDAARIFQYPYAETDKLAKLIPEKP 468

Query: 484  A---------------------HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                                  HP + + I    RF E    D +  R+L+ + ++EG  
Sbjct: 469  VGTTLKDVLRRTGDGRYEPTEKHPGAAREIL---RFVER---DEAAKRVLDTAFEIEGYA 522

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTL 581
            RHA THAAG+VI + PL+ +VP+ R  + +  V  Q  M  +E  GL+K DFLGL+ L +
Sbjct: 523  RHAGTHAAGVVISEEPLTDIVPLQRVAKDESSVMVQHPMSDVEALGLLKVDFLGLRNLDV 582

Query: 582  LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++++L  + +  G ++++  IP DD ET  L     T G+FQ ESSGM++ L+ ++PD  
Sbjct: 583  IEETLRIVRETTGERINIREIPLDDEETLKLFARGDTFGVFQFESSGMQRMLQEVRPDRF 642

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            +D++AL +LYRPGP+D I  +   K+  E +    P + P+L+ T GV  YQEQ+M+I++
Sbjct: 643  DDLVALNALYRPGPMDYIPNFKKGKHDPESVRYPDPRLKPILEPTYGVAAYQEQLMEISK 702

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +L G++  EAD LR+A+GKK K+ +   +++F+ G  +NG+   +A  ++E + K   Y 
Sbjct: 703  VLGGFTPGEADTLRKAIGKKKKDILATLRDKFMRGCEENGVEPGVARELWEWMEKAGGYS 762

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSH+A Y+ +++QTA++K HYP  ++AA ++  M+  +++ ++  +AR   I+++PP 
Sbjct: 763  FNKSHSACYSFLAFQTAYLKAHYPTAYMAALLSSVMNTKDRVPQYVAEARAMGIEVLPPD 822

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNR 879
            VN     F V  + I + L+A+K VG  T   I+ +  +  PF  + DFC RVD    N+
Sbjct: 823  VNESGKRFTVVGDTIRFGLSAVKNVGDNTVEAILASREEGGPFRDIFDFCERVDPSTYNK 882

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKI 938
            R LESL+  GA D  G+SR  +L       +  + V + R    E+ FA  +    +   
Sbjct: 883  RTLESLIKCGAFDRTGHSRSAMLAVH---TEAVERVSRGRRASSESQFAMFDLAEVAPPR 939

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN---- 994
                 + ++     E E+  LG + S HPL   +P++ K+  K  + S++ + G      
Sbjct: 940  PEVPATPDDPRRNLEWEKETLGLFVSDHPL---RPVMHKL-RKHVDLSLSELDGRQDGAV 995

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +A +  S +   TRKG  +  +   +     E   FP
Sbjct: 996  VCVAGLATSVRVSTTRKGETMAVLQLDDTRGMAEVLVFP 1034


>gi|229829648|ref|ZP_04455717.1| hypothetical protein GCWU000342_01745 [Shuttleworthia satelles DSM
            14600]
 gi|229791637|gb|EEP27751.1| hypothetical protein GCWU000342_01745 [Shuttleworthia satelles DSM
            14600]
          Length = 1175

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 382/1051 (36%), Positives = 590/1051 (56%), Gaps = 46/1051 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ +SLL+G+  + + + ++      A AITD   ++  +EF ++  A GI+P
Sbjct: 2    SFVHLHSHTQFSLLDGSNKIRDYVSRVRELGMNAAAITDHGVMYGVIEFYKECHAQGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ +         N G         ++L+     GY  LI++VS  ++ D      
Sbjct: 62   LIGCEVYVATGSRFD-RNSGSAGEDRYYHLILIAENNRGYANLIKIVSAGFV-DGYYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L+    EG+I  +   +G + +       + A++  L  +  FG    Y+ LQ 
Sbjct: 120  RVDREILERY-HEGIICTSACLAGQVQKYLQRGQYEAAKEAALWHENTFGHGNYYLELQD 178

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H +  D     ++++L+    +PLVATN+  +   ED+EAHDVL+ +     ++  DR R
Sbjct: 179  HGQAVDGRVVQELIRLSGETGIPLVATNDCHYTMAEDWEAHDVLLCIQTGKKITDTDRMR 238

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM  +F   PEA+ENT +IA RC   ++     +P +      D    
Sbjct: 239  YEGGQYYVKSEEEMRKLFPFAPEAIENTQKIADRCQVTIEFGVTKMPHYAVPRGYDAW-- 296

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GL+ R   GA A        + +L +EL VI +M +  YFLIV D+I +
Sbjct: 297  --TYLNKLCYEGLDRRYGDGADA-------LKPQLSYELGVIQKMGYVDYFLIVWDYINY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ +   VGPGRGS AGS+ AY   ITDIDP+RF L+FERFLNP+R++MPD D+DF  + 
Sbjct: 348  ARTHGCTVGPGRGSAAGSLVAYTTGITDIDPIRFQLIFERFLNPERVTMPDIDVDFDYEH 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R +VIRYV  KYG + V QIITFG+L  + A+RDVGR L +PY  VD + K +P +    
Sbjct: 408  RGDVIRYVTEKYGEDAVTQIITFGTLAPRNAIRDVGRVLDLPYGLVDTVAKSVPQELKIT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   +++   D  V  L+++++KLEGL R++STHAAG+VI  + + + VP+ 
Sbjct: 468  ID-KALKANPELKKSYDEDEEVHNLIDMARKLEGLPRNSSTHAAGVVIAAKAMDEYVPLA 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQR-GVKVDLSLIPFD 604
            R    ++ VTQFNM  +E+ GL+K DFLGL+TL ++  ++ D  A   G+ +D++ IP+D
Sbjct: 527  RGTDGNV-VTQFNMIEVEELGLLKMDFLGLRTLNVIADAVRDARANHPGLDLDINRIPYD 585

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D E Y ++      G+FQLES+GM+  ++ ++P  ++DIIA ++LYRPGP+D I  Y   
Sbjct: 586  DPEVYAMIGRGQCEGVFQLESAGMKSFMKELKPANLDDIIAGIALYRPGPMDFIPRYIKG 645

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K   + IV   P + P+L+ T G I+YQEQVMQI Q L+GYSL  AD++RRAM KK  +E
Sbjct: 646  KKNADAIVYDCPQLKPILESTYGCIVYQEQVMQIVQQLAGYSLGRADLVRRAMSKKHADE 705

Query: 725  MDKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            M++++  FI        +G   NGIS+ +A  I++ +  FA+Y FNKSHAA YAVI+YQT
Sbjct: 706  MERERHNFIFGNREEGVAGCLANGISEAVASKIYDEMMDFANYAFNKSHAACYAVITYQT 765

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K +YP EF+AA MT  ++  +K+ ++    R+  I+++PP +N+    F   D  + 
Sbjct: 766  AYLKHYYPREFMAALMTTFINQSDKVSQYIAHCREIGIEVLPPDINSGDGRFVADDKGVR 825

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y + AIK VG      I+ E +A  PF +LEDF +RV  K +N+R +E+L+ AGA D   
Sbjct: 826  YGMYAIKSVGHPVIDAIVAERNARGPFKTLEDFLTRVSDKAVNKRSVENLIKAGACDSLD 885

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKG--TFSDKI-TLEKFSVENSSV 950
             +R Q+      I       +K+      ++F  A E+G   F+ K+  +E+F      +
Sbjct: 886  GNRRQMTYIFPTIMDQVSSEKKHSMAGQMSLFDIAGEEGREDFAFKMPDVEEFD-RQQLL 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY-------EESVATIRG-NNIRLAAMVV 1002
             FE E  VLG Y SGHPL+    ++RK             E+  A I+    + LA M+ 
Sbjct: 945  AFEKE--VLGIYVSGHPLEDDLDLIRKNTSDNTLEFRLDQEKGQAPIQDKKQVVLAGMIT 1002

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            SK  + TR    +  +   +     E   FP
Sbjct: 1003 SKNVRFTRNNQPMAILNLEDLYGTVELVVFP 1033


>gi|289434854|ref|YP_003464726.1| DNA polymerase III, alpha subunit [Listeria seeligeri serovar 1/2b
            str. SLCC3954]
 gi|289171098|emb|CBH27640.1| DNA polymerase III, alpha subunit [Listeria seeligeri serovar 1/2b
            str. SLCC3954]
          Length = 1108

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 374/1031 (36%), Positives = 590/1031 (57%), Gaps = 47/1031 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S+++++ K      PA+AITD N L+ A+EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASVDSLVAKAKEYHYPALAITDKNVLYGAVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + + +Q  L   N  +        ++L+  T  GY  L+++ S +   ++G++   
Sbjct: 63   IG--MTVTIQGYLNPINSYE--------LILIAETTAGYHELLKIASAIQTREEGQE--- 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   ++ LI ++ G+ G ++R     +   A +       +FG D +Y++LQ+ 
Sbjct: 110  LPQSWLRAY-SKDLIAISPGAKGEVERLLMEENRDGALEAYQNLVAIFGGDSVYLSLQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +     ++       ++  VAT N  ++  +D +A +VL A+  +  V  +  P   
Sbjct: 169  ---NPRLFGKIETFCMEEKVRAVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWETLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P+++   +       +D   +  E T E+A RC   + +   +LPRF      +  +   
Sbjct: 226  PNYFTSQKEIEREWQTDFEKQVCEETGELAARCKVEIALDQHLLPRF----PLNADQSAS 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR  A AGLE R        G  A DY++RLD+EL VI  M F+ YFLIV D I++++
Sbjct: 282  EVLRQTAYAGLEER--------GLMAPDYQERLDYELKVITEMGFADYFLIVWDVIRYSR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334  EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     ++
Sbjct: 394  EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--IT 451

Query: 489  LQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            LQ    +S   E  +    ++ ++ E++ +LEGL RH STHAAGIVI D+PL + V +  
Sbjct: 452  LQKAIQESPRLENHIKSSKINEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQL 511

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D 
Sbjct: 512  G-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNREKPLTLAAISLEDE 570

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L  T  T G+FQ ES G+R+ L  ++P   EDI+A+ +LYRPGP++ I  +  RK+
Sbjct: 571  KTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDIVAVDALYRPGPMEQIDTFIARKH 630

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GKE I   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + ++
Sbjct: 631  GKEAIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLN 690

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +++  F+ GA   G S++ A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K +YP  
Sbjct: 691  EERIHFVEGARSKGYSESSANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKANYPAA 750

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGV 845
            F+++ ++    N +KI ++  +A+ + I+++ PS+N     F++ G+N I YS   I+ V
Sbjct: 751  FMSSLLSSVFGNDDKISQYITEAKNYGIRMLAPSINHSNYYFQMEGENAIRYSFRVIRKV 810

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
             T     I+      PF    DFC R+  K L   +LE+LV +G  D FG  R  +L ++
Sbjct: 811  PTKFILEIINERKKAPFQDFFDFCERMPHKMLTETILEALVLSGCFDEFGEDRATVLATI 870

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963
            D + +Y   + ++  +K  N+FA E   F  K+          S+  + E E+   G Y 
Sbjct: 871  DAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKAAPISIDEKLEKEKLYTGQYV 927

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            S HP+  Y+  L+ + I      +A I  G N R+A  V   +  +T+KG  + ++T S+
Sbjct: 928  SAHPVSYYQTKLQNLAIT----RLADIHSGKNYRVAVYVHEIKSIRTKKGETMCFLTISD 983

Query: 1023 PAKEYEANFFP 1033
              KE  A  FP
Sbjct: 984  DTKELSAVMFP 994


>gi|148273031|ref|YP_001222592.1| DNA polymerase III subunit alpha [Clavibacter michiganensis subsp.
            michiganensis NCPPB 382]
 gi|147830961|emb|CAN01906.1| dnaE2 [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 1170

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 397/1066 (37%), Positives = 579/1066 (54%), Gaps = 54/1066 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++ SFVHL VHS YS+L+GA  +  ++   A  + PA+AITD  N+F A +F ++A A
Sbjct: 1    MPRNDSFVHLHVHSEYSMLDGAARVGPLVQAAAEQKMPAVAITDHGNVFGAFDFWKQAKA 60

Query: 65   AGIQPIIGCQLDIDM------QDNLKMTNQGK---TPFPTVPSIVLLVSTAEGYQRLIEL 115
            AG++PIIG +  I        +  ++  N G+   +       + +L  T EG   L  L
Sbjct: 61   AGVKPIIGTEAYITPGTHRGDRTRIRWGNGGQDDVSGSGAYTHLTMLAETTEGMHNLFRL 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             SR  L  +G          L     +GLI  TG  SG +           A K    F+
Sbjct: 121  SSRASL--EGYYFKPRMDRELLSTYAKGLIATTGCPSGEVQTRLRLGQYDEAVKAAADFR 178

Query: 176  KLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +FG +  +  +  H  G +R   + + +LA    LPLVATN+  +  E D  +H  L+ 
Sbjct: 179  DIFGAENYFCEVMDHGLGIERRIMTDLHRLAKDLGLPLVATNDLHYTHEHDATSHAALLC 238

Query: 234  VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            V   T +   +R +   D  YLK   +M  +F D  EA +NT+ IA RC       A  +
Sbjct: 239  VQSGTTLDDPNRFKFDADEFYLKTAQQMRHLFRDHEEACDNTLLIAERCDVQFNESANYM 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            PR+   E +     E+     +   GL  R  +G       + D R+R D+E+ VIA+M 
Sbjct: 299  PRYPVPEGE----SEQTWFVKEVERGLVRRYPRG------FSDDVRKRADYEVGVIAQMG 348

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFL+VADFI W+K+N I VGPGRGSGAGS+ AYA+ ITD+DPL   LLFERFLNPDR
Sbjct: 349  FPGYFLVVADFINWSKENGIRVGPGRGSGAGSMVAYAMGITDLDPLEHGLLFERFLNPDR 408

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFD+DF   RR EVIRYV +KYG ERVAQI+T+G+++AK AL+D  R L  P+S  
Sbjct: 409  VSMPDFDVDFDDRRRGEVIRYVTDKYGDERVAQIVTYGTIKAKQALKDSSRVLGYPFSMG 468

Query: 473  DRLCKLIPNDPA---HPVSLQAIADDSR--------FREARLADPSVDRLLEISQKLEGL 521
            D+L K +P  PA     + L  I D           FRE    DP   ++ E +Q +E L
Sbjct: 469  DKLTKAMP--PAIMGKDIPLSGILDTDHPRYREAGDFREVLAMDPEAQKVFETAQGIENL 526

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HAAG+++   PL  ++P+ +  +    VTQF+    E  GLIK DFLGL+ LT+
Sbjct: 527  KRQWGVHAAGVIMSSEPLIDIIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTI 586

Query: 582  LQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +L+ + + RG K+ L  +  DD   Y LL    TLG+FQL+   MR  L  M+PD  
Sbjct: 587  IDDALNNIESNRGEKLVLEDLGLDDQGAYDLLARGDTLGVFQLDGGPMRSLLRMMKPDNF 646

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQ 694
            EDI A+++LYRPGP+  ++   Y  RKNG ++I  IHP ++  L+E    T G+I+YQEQ
Sbjct: 647  EDISAVIALYRPGPMGANSHTNYALRKNGLQEITPIHPELEEPLREVLGTTHGLIVYQEQ 706

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VM +AQ L+G++L++AD+LRRAMGKK K E+DKQ E F  G   NG S      ++++L 
Sbjct: 707  VMSVAQKLAGFTLAQADLLRRAMGKKKKSELDKQFEGFSQGMKDNGYSMAAVKALWDILL 766

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+DY FNK+H+AAY V+SY TA++K HYP E++AA +T   D+ +K+  +  + R+  I
Sbjct: 767  PFSDYAFNKAHSAAYGVVSYWTAYLKAHYPAEYMAALLTSVGDSKDKMALYLNECRRMGI 826

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873
            +++PP VN     F      I + L A++ VG      +  A  ++  F+S +DF  +V 
Sbjct: 827  KVLPPDVNESIGFFAAAGADIRFGLGAVRNVGANVVEALRGARTEQGAFESFDDFLKKVP 886

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI---FAHE 930
                N+R +ESL+ AGA D  G +R  LL+  + +   +   ++   N           +
Sbjct: 887  LPVANKRTVESLIKAGAFDSLGDTRRALLEVHEGMIDASVSDKRAAMNGQVGFDFDSLWD 946

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT- 989
            +   + K+       +   + FE E  +LG Y S HPL   +  L K+   G  E +AT 
Sbjct: 947  EPQHARKVPERPEWAKRDKLAFERE--MLGLYVSDHPLAGLEIPLAKLASTGIAELLATD 1004

Query: 990  --IRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
              + G  + LA ++ S Q +  R  G++ G V   +   E    F 
Sbjct: 1005 ASMDGETVTLAGLLTSVQHRTARNSGNQYGMVQLEDFGGEITCMFM 1050


>gi|149195118|ref|ZP_01872210.1| DNA polymerase III subunit alpha [Caminibacter mediatlanticus TB-2]
 gi|149134831|gb|EDM23315.1| DNA polymerase III subunit alpha [Caminibacter mediatlanticus TB-2]
          Length = 1016

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 350/884 (39%), Positives = 529/884 (59%), Gaps = 49/884 (5%)

Query: 182  LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            L++ ++R +  +   E+ ++ L+    +PL+A+ N  +L++EDY   D L  +  +    
Sbjct: 42   LFLEIRRDKKEENLIENDLITLSKETNIPLIASTNIFYLNKEDYIYKDALECIESNKQFD 101

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF------ 295
               R     + YLK++ E   +F DLPEALEN  ++    +  + +  P  P F      
Sbjct: 102  DVHREYDIGEFYLKSKEEYEELFKDLPEALENN-KVLEEINLEIPLGNPTPPTFKFTKEY 160

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
             +KE  +I  + E     K   GL+ RL +  I K  H ++Y++RL++E+++I +MKF G
Sbjct: 161  AKKEGLEIDSDVEY-FEYKCKEGLKKRLKK--IPKELH-EEYKKRLEYEIDIIKKMKFPG 216

Query: 356  YFLIVADFIQWAKK---------NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            Y LIV DFI +AK          N IPVGPGRGS AGS+ AYAL IT+IDP+++ LLFER
Sbjct: 217  YMLIVWDFINYAKDPSRHLRGDGNKIPVGPGRGSAAGSLVAYALEITNIDPIKYGLLFER 276

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPD D+DFCQ+RR+EVI YVQ KYG E VAQ++TFGSL AK  LRD+ R   
Sbjct: 277  FLNPERVSMPDIDVDFCQERREEVIEYVQKKYGKENVAQVVTFGSLLAKGVLRDIARIFG 336

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            + YS  D+  KLIP+     ++L+   + + + +E    +P  +RL    + LEGL R+ 
Sbjct: 337  IEYSTADKFVKLIPDKLG--ITLKEAKELEPKIQEIVNEEPLYERLYSFGEALEGLKRNT 394

Query: 526  STHAAGIVIGDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
              HAAG+VI D  L +  P+Y+ D   D   TQ+++ ++E   LIKFDFLGLKTLT++ K
Sbjct: 395  GKHAAGVVISDTKLWEKSPLYKQDENDDFHTTQYSLNYLEPVDLIKFDFLGLKTLTVIDK 454

Query: 585  SLDFLAQRGVKVDLSLIPFDDHE-TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++  + Q   K         D E  + L+ +  TLG+FQ+ES GM+   + ++P+  ED+
Sbjct: 455  AIKNIKQNQNKDIDIDDLSLDDEKVFKLIQSGKTLGLFQIESDGMQDLAKRLKPENFEDV 514

Query: 644  IALVSLYRPGPIDNIVV--YNNRKNGKEKIV----SIHPLIDPMLKETQGVIIYQEQVMQ 697
            IA+++LYRPGP+D  ++  Y  RK+G+++I         ++ P+LK T GVI+YQEQVMQ
Sbjct: 515  IAMLALYRPGPMDAGMLDDYIERKHGRKEISYFFDEFEEVLKPILKPTYGVIVYQEQVMQ 574

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            I Q + G+SL EAD++RRAMGKK  + M K  E F + A+K G S   A ++F L+ KFA
Sbjct: 575  IVQAIGGFSLGEADIIRRAMGKKKADLMAKYAEEFATRAAKRGFSYENAKSLFNLIEKFA 634

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             YGFNKSH+AAYA+I+YQTA++KT+YP EF A+ ++ E DN EKI K+  +A+   I+++
Sbjct: 635  GYGFNKSHSAAYAMITYQTAFLKTYYPTEFFASLLSYEADNTEKIAKYIDEAKSMQIEVL 694

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            PP VN    +F    N+I + L+AIKGVG+     I+    ++PF  LEDF  ++D+ K+
Sbjct: 695  PPDVNKSNYEFTPVKNKILFGLSAIKGVGSKAIESIV---TNRPFSDLEDFILKIDTSKV 751

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            N++VLE L+ +GA+D FGYSR  LLQ+L+N+ ++     K R    +N   H+   F+D 
Sbjct: 752  NKKVLEQLIKSGAMDSFGYSRKTLLQNLENMLEF-----KKRIEDRKNAINHKNSLFADI 806

Query: 938  ITLEKFSVE---------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
            +   +   +         ++    + E   LGFY S HPLD YK  ++K+      E + 
Sbjct: 807  VEENEVEEKLEINITDEFDTKTLLDGEYETLGFYVSAHPLDPYKEEIQKIKYNLSSE-IE 865

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             I G        V S + + ++KG++   V+  +   ++E   F
Sbjct: 866  EIIGKEALFIGKVESMKVRISKKGNKFAIVSIMDYHGKFEVMVF 909


>gi|319651827|ref|ZP_08005952.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
 gi|317396479|gb|EFV77192.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
          Length = 923

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 350/829 (42%), Positives = 512/829 (61%), Gaps = 51/829 (6%)

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARR 280
            +ED  AH+ L+A+ +   +  + R R+  D +YLK+  EM  + S  P+ALENT++IA +
Sbjct: 5    KEDAFAHECLLAIKNGEKLQDEARERLKSDEYYLKSSGEMAELLSGYPDALENTIKIAEQ 64

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV-RLAQGAIAKGYHAQ---- 335
            C+ +L++    LP++                   AV G+    L      KG+  +    
Sbjct: 65   CNVMLELDKQNLPKY------------------PAVKGMSADELLAEVCWKGFADRYPDA 106

Query: 336  --DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              ++R+RL +ELN+I  MKFS YFLIV DF++++++N I  GPGRGS AGS+ AY L IT
Sbjct: 107  DGEHRERLQYELNIIKNMKFSDYFLIVWDFMKFSRENGILTGPGRGSAAGSMVAYVLYIT 166

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            D+DP+   LLFERFLNP+R+SMPD DIDF   RRDEVIRYV  KYG   VAQI+TFG+L 
Sbjct: 167  DVDPIEHQLLFERFLNPERISMPDIDIDFPDHRRDEVIRYVSRKYGELHVAQILTFGTLA 226

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVD 509
            AKAALRDVGRA  +   ++D L + +P+     +SL+    +S    RF E    +    
Sbjct: 227  AKAALRDVGRAFGLNPKELDMLSRKVPSKLG--ISLKEAYKESEPLRRFTEESDLN---R 281

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            RL E + KLEGL RH STHAAG+VI + PL + +P+ +    ++ +TQ++M+ +E  GL+
Sbjct: 282  RLFETAIKLEGLPRHTSTHAAGVVISEHPLVEAIPIQKG-HENVYLTQYSMEHLEDVGLL 340

Query: 570  KFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGL+ LTL++  L  + ++ G ++D+  IP DD   Y LL    T GIFQLES GM
Sbjct: 341  KMDFLGLRNLTLIENILSSIQRKTGTQIDIKNIPLDDEAVYSLLGRGDTTGIFQLESEGM 400

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            R  L  +QP   EDI+A+ +LYRPGP++NI ++ +RK+G++ I+  HP + P+L+ T GV
Sbjct: 401  RSVLTRLQPTRFEDIVAVNALYRPGPMENIPLFIDRKHGRKPIIFPHPDLKPILENTYGV 460

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK KE +D+++  F+ GA K G ++  A +
Sbjct: 461  IVYQEQIMQIAAKMAGFSLGEADLLRRAVSKKQKEVLDRERVHFVGGAVKKGYNEQAAHD 520

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            I++L+ +FA+YGFN+SHA AY+ I+YQ A++KTHYP+ F+A+ +T  + N  +I ++  +
Sbjct: 521  IYDLIVRFANYGFNRSHAVAYSFIAYQLAYLKTHYPLYFMASLLTSAVGNEGRIAQYIGE 580

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
             RQ  + + PPS+N     F V  + I YSLAAIKGVG    R I +A  +K F+ L DF
Sbjct: 581  LRQMGLALSPPSINKSGYSFLVEKDSIRYSLAAIKGVGAAALRDIFQARKNKRFEDLFDF 640

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV--EKNRTNKHEN- 925
            C RV +K +NR+VLESLV +G+ D FG  R  LL SLD   ++AQ V  E ++ +  E+ 
Sbjct: 641  CIRVSTKAVNRKVLESLVHSGSFDEFGEDRAVLLASLDVAAEHAQLVMPEDDQADFFEDD 700

Query: 926  -IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
              F   K T  D I  E        +RFE +  VLG Y S HP+ +Y+     +      
Sbjct: 701  EFFPKPKYTEVDPIRSE------DKLRFEKD--VLGLYLSDHPVSIYESSFHLLDASPLI 752

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            E       N  +  A +   ++ +T+KG  + +++ S+   + EA  FP
Sbjct: 753  E--LERNANKAKTVAYLSEVKKIRTKKGEPMAFLSLSDQTGDMEAVVFP 799


>gi|313633079|gb|EFR99983.1| DNA polymerase III subunit alpha [Listeria seeligeri FSL N1-067]
          Length = 1108

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 374/1031 (36%), Positives = 589/1031 (57%), Gaps = 47/1031 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S+++++ K      PA+AITD N L+ A+EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASVDSLVAKAKEYHYPALAITDKNVLYGAVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + + +Q  L   N  +        ++L+  T  GY  L+++ S +   ++G++   
Sbjct: 63   IG--MTVTIQGYLNPINSYE--------LILIAETTAGYHELLKIASAIQTREEGQE--- 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   ++ LI ++ G+ G ++R     +   A +       +FG D +Y++LQ+ 
Sbjct: 110  LPQSWLRAY-SKDLIAISPGAKGEVERLLMEENRDGALEAYQNLVAIFGGDSVYLSLQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +     ++       ++  VAT N  ++  +D +A +VL A+  +  V  +  P   
Sbjct: 169  ---NPRLFGKIETFCTEEKVRAVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWETLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P+++           +D   +  E T E+A RC   + +   +LPRF      +  +   
Sbjct: 226  PNYFTSQEEIEREWQTDFEKQVCEETGELAARCKVEIALDQHLLPRF----PLNADQSAS 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR  A AGLE R        G  A DY++RLD+EL VI  M F+ YFLIV D I++++
Sbjct: 282  EVLRQTAYAGLEER--------GLMAPDYQERLDYELKVITEMGFADYFLIVWDVIRYSR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334  EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     ++
Sbjct: 394  EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--IT 451

Query: 489  LQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            LQ    +S   E  +    ++ ++ E++ +LEGL RH STHAAGIVI D+PL + V +  
Sbjct: 452  LQKAIQESPRLENHIKSSKINEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQL 511

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D 
Sbjct: 512  G-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNREKPLTLAAISLEDE 570

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L  T  T G+FQ ES G+R+ L  ++P   EDI+A+ +LYRPGP++ I  +  RK+
Sbjct: 571  KTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDIVAVDALYRPGPMEQIDTFIARKH 630

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GKE I   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + ++
Sbjct: 631  GKEAIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLN 690

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +++  F+ GA   G S++ A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K +YP  
Sbjct: 691  EERIHFVEGARSKGYSESSANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKANYPAA 750

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGV 845
            F+++ ++    N +KI ++  +A+ + I+++ PS+N     F++ G+N I YS   I+ V
Sbjct: 751  FMSSLLSSVFGNDDKISQYITEAKNYGIRMLAPSINHSNYYFQIEGENAIRYSFRVIRKV 810

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
             T     I+      PF    DFC R+  K L   +LE+LV +G  D FG  R  +L ++
Sbjct: 811  PTKFILEIINERKKAPFQDFFDFCERMPHKMLTETILEALVLSGCFDEFGEDRATVLATI 870

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963
            D + +Y   + ++  +K  N+FA E   F  K+          S+  + E E+   G Y 
Sbjct: 871  DAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKAAPISIDEKLEKEKLYTGQYV 927

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            S HP+  Y+  L+ + I      +A I  G N R+A  V   +  +T+KG  + ++T S+
Sbjct: 928  SAHPVSYYQTKLQNLAIT----RLADIHSGKNYRVAVYVHEVKSIRTKKGETMCFLTISD 983

Query: 1023 PAKEYEANFFP 1033
              KE  A  FP
Sbjct: 984  DTKELSAVMFP 994


>gi|257066179|ref|YP_003152435.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
 gi|256798059|gb|ACV28714.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
          Length = 1148

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 379/1070 (35%), Positives = 597/1070 (55%), Gaps = 86/1070 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G   ++ +LD+       ++AITD   ++  +EF ++A   GI+PI
Sbjct: 5    FTHLHVHTEYSLLDGFSRIDLLLDRAKELGMDSLAITDHGQMYGVIEFYKQAKKRGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +   D+       +  +     ++LL    +GY+ LI++VS  Y+ +      R
Sbjct: 65   IGCEVYVSENDHTIKEASNRRYY----HLILLAKNMDGYKNLIKIVSEAYV-NGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
            +   ++++  +E +I L+   +G + +    N  + A++    +++ FG    Y+ LQ H
Sbjct: 120  VSFDFIKKY-SEDIIALSACLNGEVSQRLIENDYESAKETAQRYEEAFGKGNFYLELQNH 178

Query: 190  RGYDRYRESQVVQ--LAYTHE---LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                  +E  +V   LA  HE   +PLVATN+  ++++ED    DVL+ +    +V  +D
Sbjct: 179  G----IKEQNIVNRGLARIHEEEDIPLVATNDIHYINKEDAYYQDVLLCIQTGKLVKDED 234

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--IEKECD 301
            R ++   + YLK+ +EM  +F     A+ENT +IA +C+     H P LP F  +E+   
Sbjct: 235  RMKMPASEFYLKSYNEMKELFGAYQGAIENTQKIADQCNVEFTFHEPHLPYFTKVEEGLT 294

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D++              L+  + QG I K G  ++  R R D E+ VIA M +  YFLIV
Sbjct: 295  DLEY-------------LKKLVDQGLIKKYGSISEKIRSRADKEIKVIADMGYVDYFLIV 341

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DF+++A++N+I VGPGRGS AGS+ +YAL IT IDPL++ L+FERFLNP+R+SMPD DI
Sbjct: 342  WDFVRYARENDIAVGPGRGSAAGSIVSYALDITQIDPLKYKLIFERFLNPERVSMPDIDI 401

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF    RD+V+ YV   YG + V+QI+TFG +QA+ A+RDVGR L + Y++VD++ KLIP
Sbjct: 402  DFDYVLRDKVVEYVNELYGRDHVSQIVTFGRMQARNAVRDVGRVLDISYAKVDKIAKLIP 461

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  +  +A    S+F+E   +D    RL++ ++K+EGL RH S HAAG+VI    L+
Sbjct: 462  QAIGMTID-KAFDSSSKFKEIYESDVEAKRLIDTARKVEGLPRHTSIHAAGVVISKEVLT 520

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLS 599
             ++P+   + +DL VTQ++M  IE+ GL+K DFLGL+ LT+++ ++ D    RG+ VDLS
Sbjct: 521  DIIPLA--LSNDLVVTQYDMTEIEELGLLKMDFLGLRNLTVIKNTIKDVKKNRGIDVDLS 578

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I  +D           T+GIFQ ES+GMR  L+ ++P   +D+IA  SL+RPGP+D I 
Sbjct: 579  KIDVNDKNVIDQFNNAKTIGIFQFESAGMRNFLKNLKPTVFDDLIAANSLFRPGPMDEIP 638

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y + KN    +  I P + P+L  T G+I+YQEQVMQI Q L+GYSL EAD LRRAM K
Sbjct: 639  KYIHNKNNPADVTFIDPALKPILDVTYGIIVYQEQVMQIVQKLAGYSLGEADNLRRAMSK 698

Query: 720  K------------IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            K            IK + D      I G  +NG+ ++ A  I++ +  FA Y FNKSH+A
Sbjct: 699  KKMAVMEENRGIFIKGKTDSSGNVVIPGCIRNGVDESSANQIYDEMISFAKYAFNKSHSA 758

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AY++++ QTA++K +YP E++A  ++  MD   K+  +  + +   I+++PP VN    +
Sbjct: 759  AYSLVAIQTAYLKYYYPEEYMANLISSVMDQSSKLYLYVNETKALGIEVLPPDVNKSFAE 818

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRV---DSKKLNRRVLE 883
            F V + +I + L+ IK VG+     I++A   D  F + +DF  RV   DS+ LN++ +E
Sbjct: 819  FSVEEGKIIFGLSGIKNVGSNLIDSIVKARKKDGKFTNFKDFLQRVDEIDSRSLNKKGIE 878

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            SL+ AGA D   Y+R  L+        Y + +     N+  N+    KG  +    L   
Sbjct: 879  SLIKAGAFDSLKYTRSSLMAI------YEKAISAVSDNRKINV----KGQLNLLDDLADK 928

Query: 944  SVENSSVRFENE----------QRVLGFYFSGHPLDVYKPILRKMG-----IKGYEESVA 988
              E+  ++  NE          + VLGFY S HPL     +  ++G        Y++ + 
Sbjct: 929  PKEDVRIQEINEFPKKTKLKLEKEVLGFYISDHPL---SDLGDRLGDFVNFTTDYKDHID 985

Query: 989  TIR-----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              R        + +A ++ +K +  T+K   + + T  +     E   FP
Sbjct: 986  DTRIHLLDNKFVSMAGVITNKSEIMTKKRQLMCFATLEDMQGSIEIVIFP 1035


>gi|170781777|ref|YP_001710109.1| DNA polymerase III subunit alpha [Clavibacter michiganensis subsp.
            sepedonicus]
 gi|169156345|emb|CAQ01493.1| DNA polymerase III alpha chain [Clavibacter michiganensis subsp.
            sepedonicus]
          Length = 1170

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 397/1066 (37%), Positives = 578/1066 (54%), Gaps = 54/1066 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++ SFVHL VHS YS+L+GA  +  ++   A    PA+AITD  N+F A +F ++A A
Sbjct: 1    MPRNDSFVHLHVHSEYSMLDGAARVGPLVQAAAEQGMPAVAITDHGNVFGAFDFWKQAKA 60

Query: 65   AGIQPIIGCQLDIDM------QDNLKMTNQGK---TPFPTVPSIVLLVSTAEGYQRLIEL 115
            AG++PIIG +  I        +  ++  N G+   +       + +L  T EG   L  L
Sbjct: 61   AGVKPIIGTEAYITPGTHRGDRTRIRWGNGGQDDVSGSGAYTHLTMLAETTEGMHNLFRL 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             SR  L  +G          L     +GLI  TG  SG +           A K    F+
Sbjct: 121  SSRASL--EGYYFKPRMDRELLSTYAKGLIATTGCPSGEVQTRLRLGQYDEAVKAAADFR 178

Query: 176  KLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +FG +  +  +  H  G +R   + + +LA    LPLVATN+  +  E D  +H  L+ 
Sbjct: 179  DIFGAENYFCEVMDHGLGIERRIMTDLHRLAKDLGLPLVATNDLHYTHEHDATSHAALLC 238

Query: 234  VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            V   T +   +R +   D  YLK   +M  +F D  EA +NT+ IA RC       A  +
Sbjct: 239  VQSGTTLDDPNRFKFDADEFYLKTAQQMRHLFRDHEEACDNTLLIAERCDVQFNESANYM 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            PR+   E +     E+     +   GL  R  +G       + D R+R D+E+ VIA+M 
Sbjct: 299  PRYPVPEGE----SEQTWFVKEVERGLVRRYPRG------FSDDVRKRADYEVGVIAQMG 348

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFL+VADFI W+K+N I VGPGRGSGAGS+ AYA+ ITD+DPL   LLFERFLNPDR
Sbjct: 349  FPGYFLVVADFINWSKENGIRVGPGRGSGAGSMVAYAMGITDLDPLEHGLLFERFLNPDR 408

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFD+DF   RR EVIRYV +KYG ERVAQI+T+G+++AK AL+D  R L  P+S  
Sbjct: 409  VSMPDFDVDFDDRRRGEVIRYVTDKYGDERVAQIVTYGTIKAKQALKDSSRVLGYPFSMG 468

Query: 473  DRLCKLIPNDPA---HPVSLQAIADDSR--------FREARLADPSVDRLLEISQKLEGL 521
            D+L K +P  PA     + L  I D           FRE    DP   ++ E +Q +E L
Sbjct: 469  DKLTKAMP--PAIMGKDIPLSGILDTEHPRYREAGDFREVLAMDPEAQKVFETAQGIENL 526

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HAAG+++   PL  ++P+ +  +    VTQF+    E  GLIK DFLGL+ LT+
Sbjct: 527  KRQWGVHAAGVIMSSEPLIDIIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTI 586

Query: 582  LQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +L+ + + RG K+ L  +  DD   Y LL    TLG+FQL+   MR  L  M+PD  
Sbjct: 587  IDDALNNIESNRGEKLVLEDLGLDDQGAYDLLARGDTLGVFQLDGGPMRSLLRMMKPDNF 646

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQ 694
            EDI A+++LYRPGP+  ++   Y  RKNG ++I  IHP ++  L+E    T G+I+YQEQ
Sbjct: 647  EDISAVIALYRPGPMGANSHTNYALRKNGLQEITPIHPELEEPLREVLGTTHGLIVYQEQ 706

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VM +AQ L+G++L++AD+LRRAMGKK K E+DKQ E F  G   NG S      ++++L 
Sbjct: 707  VMSVAQKLAGFTLAQADLLRRAMGKKKKSELDKQFEGFSQGMKDNGYSMAAVKALWDILL 766

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+DY FNK+H+AAY V+SY TA++K HYP E++AA +T   D+ +K+  +  + R+  I
Sbjct: 767  PFSDYAFNKAHSAAYGVVSYWTAYLKAHYPAEYMAALLTSVGDSKDKMALYLNECRRMGI 826

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873
            +++PP VN     F      I + L A++ VG      +  A  ++  F+S +DF  +V 
Sbjct: 827  KVLPPDVNESIGFFAAAGADIRFGLGAVRNVGANVVEALRGARTEQGAFESFDDFLKKVP 886

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI---FAHE 930
                N+R +ESL+ AGA D  G +R  LL+  + +   +   ++   N           +
Sbjct: 887  LPVANKRTVESLIKAGAFDSLGDTRRALLEVHEGMIDASVSDKRAAMNGQVGFDFDSLWD 946

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT- 989
            +   + K+       +   + FE E  +LG Y S HPL   +  L K+   G  E +AT 
Sbjct: 947  EPQHARKVPERPEWAKRDKLAFERE--MLGLYVSDHPLAGLEIPLAKLASTGIAELLATD 1004

Query: 990  --IRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
              + G  + LA ++ S Q +  R  G++ G V   +   E    F 
Sbjct: 1005 ASMDGETVTLAGLLTSVQHRTARNSGNQYGMVQLEDFGGEITCMFM 1050


>gi|299822765|ref|ZP_07054651.1| DNA-directed DNA polymerase III alpha subunit [Listeria grayi DSM
            20601]
 gi|299816294|gb|EFI83532.1| DNA-directed DNA polymerase III alpha subunit [Listeria grayi DSM
            20601]
          Length = 1110

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 375/1031 (36%), Positives = 596/1031 (57%), Gaps = 46/1031 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S++ LL    SL+ ++ K  A    ++AITD N L+ A+ F +K  AA I+PI
Sbjct: 3    FVHLQVKSAFDLLSSTASLDALIAKAKACGFDSLAITDKNALYGAVNFYEKCQAAQIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + +           G         ++LL  T  GYQ L+++ S +    Q +    
Sbjct: 63   IGMTVSV----------YGYIDTTRSYELLLLAETTAGYQNLLKIASAI----QTQDEKV 108

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            + L+WL+  G +GLI ++ G++G ++     +S + A +    ++ +F  D  ++++Q  
Sbjct: 109  LPLNWLKAYG-KGLIAISPGATGEVEHLLMDSSPESAAEVTAYWQSIFSQDSFFLSIQAE 167

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                R +E+ V   +   E+ +V T +  +L   D  A +VLMA+  +  V  +  P   
Sbjct: 168  N--PRLKEA-VQNFSSAQEIDVVLTKDVQYLDAGDVRAQEVLMAIRDNRTVDYEKLPLAG 224

Query: 250  PDHYLKNRSEMV-SIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+ +L +  EM  S+ +D  + A E T +IA RC  ++ +   +LPRF  +   +   E 
Sbjct: 225  PN-FLASADEMAASLTTDFEQQAYEQTAKIAARCQVVIPMGLQLLPRFPLRSGSNASAE- 282

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L   A+AGL+ R     +A+    + Y  RL +EL+VI +M F  YFLIV D +++A
Sbjct: 283  ---LEKLALAGLQER----NVARD---KRYLDRLHYELDVITKMGFQDYFLIVWDVMRFA 332

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I  GPGRGS AGS+ +YAL ITD+DP+ + LLFERFLNP+R++MPD D+DF  +RR
Sbjct: 333  REVGILTGPGRGSAAGSLVSYALRITDVDPIAYRLLFERFLNPERVTMPDIDLDFPDNRR 392

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVIRYV +KYG + VAQI TFG+L AKAA+RD  R   +    +    K+IP+     +
Sbjct: 393  DEVIRYVVDKYGADHVAQIGTFGTLAAKAAIRDTARTFGLNAVLLSEWSKMIPSQLG--I 450

Query: 488  SLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L+A  + +    + +    V+ ++ EI++KLEGL RH STHAAGIVI D PL    P+ 
Sbjct: 451  TLKAAREQNPRLNSHIHSSHVNEMIWEIAEKLEGLPRHISTHAAGIVINDEPLVTYTPV- 509

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
            +    D  +TQ+ M  +E+ GL+K DFLGL+ L+LL + L  +   R   + L+ IP +D
Sbjct: 510  QSGSGDARLTQYAMGELERIGLLKMDFLGLRNLSLLDRILKIVNYNRTKPLTLADIPLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T +L     T G+FQ ESSG+R+ L  ++P   EDI+A+ +LYRPGP++ I  +  RK
Sbjct: 570  KATLNLFQKGDTTGVFQFESSGIRRVLRKLKPTSFEDIVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+EKIV  H  +  +L  T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK +E +
Sbjct: 630  HGEEKIVYPHEDLKQILDVTYGVIVYQEQIIQVANRMAGFSLGEADILRRAVSKKKREVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D  +++F+SGA+ NG ++T A  +++L+ +FA+YGFN+SHAAAY+ I++Q A++K HYP 
Sbjct: 690  DGFRKQFVSGANANGYAETTANEVYDLIVRFANYGFNRSHAAAYSKIAFQLAYLKAHYPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F+++ ++    N EKI ++  +A+ + I+++ PSVN     F+V  +N+I YSL  I+ 
Sbjct: 750  AFMSSLLSSVFGNDEKIAQYVTEAKNYGIEMLAPSVNKSGYYFQVEQENKIRYSLRIIRK 809

Query: 845  VGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            V       ++       PF    DFC R+ +  L  +VLE+L++AGA D FG  R  L+ 
Sbjct: 810  VPNKFILELLNVRKQGGPFADFFDFCERMPNNMLTHQVLEALIYAGAFDEFGKDRAVLMA 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-SDKITLEKFSVENSSVRFENEQRVLGFY 962
            S++   +Y     ++      N+FA E     S K    +        + + E+   G Y
Sbjct: 870  SIETGLQYTDLFGESEAGM--NLFATEDSFLKSMKPKYREADPMPMDTKLDKEKEFTGQY 927

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             S HP+  Y+ + + + +    E      GN+  +A  V   +  +T+KGS++ ++T S+
Sbjct: 928  VSAHPVTSYQQVAQTLAVT---ELADVTNGNSYAIAVYVHQIKTVRTKKGSQMCFLTISD 984

Query: 1023 PAKEYEANFFP 1033
             +KE+ A  FP
Sbjct: 985  ASKEFRAVVFP 995


>gi|260588911|ref|ZP_05854824.1| DNA polymerase III alpha subunit [Blautia hansenii DSM 20583]
 gi|331083399|ref|ZP_08332511.1| hypothetical protein HMPREF0992_01435 [Lachnospiraceae bacterium
            6_1_63FAA]
 gi|260540690|gb|EEX21259.1| DNA polymerase III alpha subunit [Blautia hansenii DSM 20583]
 gi|330404092|gb|EGG83640.1| hypothetical protein HMPREF0992_01435 [Lachnospiraceae bacterium
            6_1_63FAA]
          Length = 1156

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 383/1052 (36%), Positives = 603/1052 (57%), Gaps = 50/1052 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +N  + ++      + AITD   +F  ++F + A AAGI+P
Sbjct: 2    NFAHLHVHTEYSLLDGSNKINEYVARVKELGMNSAAITDHGVMFGCIDFYRAAKAAGIKP 61

Query: 70   IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I+GC++ +       +   Q +  +     +VLL     GY+ L+++VS+ ++ D     
Sbjct: 62   ILGCEVYVAPGSRFDREIGQAEDRYY---HLVLLAENNHGYENLMKIVSKAFV-DGFYYK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187
             R+ +  LQE   EG+I L+   +G + +       + A+   L ++K+FG    ++ LQ
Sbjct: 118  PRVDMDLLQEY-HEGIIALSACLAGEVAKNITRGMYEEAKSAALRYEKIFGKGNFFLELQ 176

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H    + R   Q+++++    + LVATN+  +  + D EAHD+L+ V    ++S ++R 
Sbjct: 177  DHGIPQQQRVNQQLLRMSQETGIALVATNDVHYTYDTDAEAHDILLCVQTRKLLSDENRM 236

Query: 247  RVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R     +Y+K+  EM  +F  +PEALENT +IA RC   ++     LP+F     D    
Sbjct: 237  RYEGGQYYVKSPEEMAELFPYIPEALENTQKIADRCEVEIEFGVTKLPKF-----DVPAP 291

Query: 306  EEENELRNK-AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                E  NK    GL+ R + G +       +  +RL++EL VI  M +  YFLIV DFI
Sbjct: 292  YTSWEYLNKLCYDGLKERYS-GDLT------ELEKRLEYELGVIKTMGYVDYFLIVWDFI 344

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+ ++I VGPGRGS AGS+ +Y L IT +DP++++LLFERFLNP+R+SMPD D+DFC 
Sbjct: 345  RFARDHDIMVGPGRGSAAGSLVSYTLGITKLDPIKYNLLFERFLNPERVSMPDIDVDFCF 404

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YV  KYG +RV QI+TFG++ A+  +RDVGR + +PY+Q D + K+IP +  
Sbjct: 405  ERRQEVIDYVVEKYGKDRVVQIVTFGTMAARGVIRDVGRVMDLPYAQCDAIAKMIPEELN 464

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  +   +     D  V +L+++S++LEGL RH S HAAG+VI  + + + VP
Sbjct: 465  ITID-KALKMNPELKNLYTTDEMVKKLIDMSRRLEGLPRHTSMHAAGVVISQKSVDEYVP 523

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            + R     + VTQF M  +E+ GL+K DFLGL+TLT++QK++  + + +G+ +D+  + +
Sbjct: 524  LARASDGSI-VTQFTMTTLEELGLLKMDFLGLRTLTVIQKAVKLIEKNKGISLDMDHVDY 582

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D   Y +L    T G+FQLES+GM   ++ ++P+ +ED+IA +SLYRPGP+D I  Y  
Sbjct: 583  NDKAVYDMLGAGKTEGVFQLESAGMTSFMKELKPESLEDVIAGISLYRPGPMDFIPQYIE 642

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             KN  + I  + P ++P+L  T G I+YQEQVMQI + L GY+L  +D++RRAM KK   
Sbjct: 643  GKNNPDSIHFLCPQLEPILSATYGCIVYQEQVMQIVRSLGGYTLGRSDLVRRAMSKKKAA 702

Query: 724  EMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
             M+K+++ F        + G    GIS+ IA  I+E +  FA Y FNKSHAAAYAV++YQ
Sbjct: 703  VMEKERQNFVYGNEEEGVPGCVNRGISEEIANKIYEQMMDFAKYAFNKSHAAAYAVVAYQ 762

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K H+PVEF+AA MT  +DN  K+  +    R+  I I+PP +N     F V    I
Sbjct: 763  TAYLKCHFPVEFMAALMTSVIDNPPKVADYILSCRRMGIAILPPDINKGDSTFSVDGGGI 822

Query: 836  YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y L+AIK +G      I+ E +    F SL DF  R+  K +N++ +E+ + AGA D  
Sbjct: 823  RYGLSAIKSIGKPVIESIVAERNQRGDFTSLRDFIERMTGKDVNKKAIENFIKAGAFDEL 882

Query: 895  GYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSS 949
              +R Q +    Q LD I +  + +   + +  + +   EK  +   +  +E++  E + 
Sbjct: 883  PGNRRQKMMVYAQILDAIVQEKKNMMAGQMSLFDFVSEEEKTAYEIHMPDVEEYPKE-AK 941

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKM-------GIKGYEESVATIR-GNNIRLAAMV 1001
            + FE E  VLG Y SGHPL+ Y+   RK         +   E     +R G  + +  M+
Sbjct: 942  LAFEKE--VLGIYISGHPLEEYETCWRKNISAVTTDFMPDEESGQPKVRDGQQVIVGGMI 999

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              K  K T+    + ++T  +     E   FP
Sbjct: 1000 TEKTIKYTKTNKVMAFLTLEDLLGTVEIVVFP 1031


>gi|253580959|ref|ZP_04858221.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847801|gb|EES75769.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1155

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 379/1050 (36%), Positives = 592/1050 (56%), Gaps = 49/1050 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F + A A GI PI
Sbjct: 3    FTHLHVHTEYSLLDGSNKIKEYVARVKELGMDSAAITDHGVMYGVIDFYRAARAEGINPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +      +   +  +       +VLL    +GY  L+++VS+ +  +      R
Sbjct: 63   LGCEVYV--APGSRFDREAGSGEDRYYHLVLLAENNQGYANLMKIVSKGFT-EGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
            + L+ L+E   EG+I L+   +G + R       + A+   L ++ +FG    ++ LQ H
Sbjct: 120  VDLAVLKEY-HEGIIALSACLAGEVARYLQRGMYEDAKAAALRYQDIFGKGNFFLELQDH 178

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 R    +++++     + LVATN+  +   ED + HD+L+ +  +  ++ +DR R 
Sbjct: 179  GIPAQRLVNQELLRMHEETGIDLVATNDVHYTRAEDADPHDILLCLQTNKKLADEDRMRY 238

Query: 249  TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +Y+K+  EM  +F    EALENT +IA+RC   ++     LPRF     D      
Sbjct: 239  EGGQYYVKSPEEMAELFPYALEALENTHKIAQRCHVEIEFGVTKLPRF-----DVPDGLT 293

Query: 308  ENELRNK-AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              E  NK    GLE R            ++ + RL++EL+ I  M +  YFLIV DFI++
Sbjct: 294  SWEYLNKLCFEGLEERYQP-------VTEELKARLNYELSTIKNMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ ++I VGPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  ARDHDIMVGPGRGSAAGSLVAYTLGITQLDPIRYDLLFERFLNPERVSMPDIDVDFCFER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV+ KYG + V QI+TFG+L A+  +RDVGR L MPY+QVD + K+IP +    
Sbjct: 407  RQEVIEYVRRKYGDDCVVQIVTFGTLAARGVIRDVGRVLDMPYAQVDSIAKMIPQELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   ++A      +  L++++++LEGL RH S HAAG+VI  + +S+ VP+ 
Sbjct: 467  ID-KALTMNPELKKAYEEQDEIHYLIDMARRLEGLPRHTSMHAAGVVISQKDVSEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            R     + VTQF M  +E+ GL+K DFLGL+TLT++Q ++  + +  GV +D+  I +DD
Sbjct: 526  RASDGSI-VTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVKLIQKDAGVTLDMQKINYDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +    L T  + G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   K
Sbjct: 585  KKVLDSLGTGRSDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPQYIRGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  + I    P ++P+LK T G I+YQEQVMQI + L+GY+L  +D++RRAM KK    M
Sbjct: 645  NRPDTIRYDCPQLEPILKPTYGCIVYQEQVMQIVRNLAGYTLGRSDLVRRAMSKKKASVM 704

Query: 726  DKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K+++ F        + G   NGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 705  EKERQNFVYGNEAEGVPGCIANGIDEATANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YPVEF+AA MT  +D   K+ ++    RQ  I+I+PP VN     F V +  I Y
Sbjct: 765  YLKYYYPVEFMAALMTSVIDFPNKVAEYILVCRQMGIKILPPDVNCGMYGFSVDNGAIRY 824

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+AIK VG      ++ E   +  + SL+DF  R +S ++N+R +E+ + AGALDC   
Sbjct: 825  GLSAIKSVGRPVIESLVREREENGQYRSLKDFMER-NSPQMNKRAVENFIKAGALDCLDG 883

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKI-TLEKFSVENSSVR 951
            +R Q +     I       +KN      ++F      +K  F  ++  +E+F  E     
Sbjct: 884  NRRQKMLVYQKISDSISQDKKNSLAGQMSLFDLVSEEDKKEFEIRMPDVEEFGKEE---L 940

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKM---GIKGYEESVAT-----IRGNNIRLAAMVVS 1003
               E+ VLG Y SGHPL+ Y+ ++ K        +++   T     + G  + +  M+  
Sbjct: 941  LGYEKEVLGIYLSGHPLENYRGMMEKTISAKTSDFQQDEETNLPKVMDGQKVIIGGMITD 1000

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K  K T+    + ++T  +     E   FP
Sbjct: 1001 KTIKYTKNNKVMAFLTVEDLVGTVEVVVFP 1030


>gi|317057698|ref|YP_004106165.1| DNA polymerase III subunit alpha [Ruminococcus albus 7]
 gi|315449967|gb|ADU23531.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7]
          Length = 1141

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 371/1044 (35%), Positives = 582/1044 (55%), Gaps = 50/1044 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +HS YSLL+GA  ++ +  ++    Q A A+TD  N+F+A+EF     AAGI+PI
Sbjct: 4    FVHLHLHSEYSLLDGACRIDRLAARLKEVGQTACAVTDHGNMFAAIEFYNTMRAAGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-V 129
            +GC++ +         ++   P+     ++LL     GY+ LI++VS  Y   +G  S  
Sbjct: 64   LGCEVYVARGSREDKDHREGKPY----HLILLCENETGYRNLIKMVSLGYT--EGFYSRP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            RI L  L++   +GLI L+G  +G +       + + AE+  L ++ +FG D  ++ +Q+
Sbjct: 118  RIDLELLRKY-HDGLICLSGCVAGELSTKIANGNYKGAEETALLYRDIFGADNYFIEIQK 176

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR     R    +++L+    +PL  TN+  +L  ED +A  VLM ++ +T         
Sbjct: 177  HRDPVEQRVMPSLIRLSQDTGIPLCLTNDCHYLRREDSQAQQVLMCISTATTTDDPAISF 236

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQKE 306
             + + Y+K+  EM  ++  +PEA+ NTV IA RC   ++  + +LP F I+   D+    
Sbjct: 237  ASDEFYVKSAEEMAELYPAIPEAMLNTVRIADRCDVEIKFGSTVLPYFGIDGVSDNAAY- 295

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LRN    GL  R  +        +++  +R+++EL+VI  M ++ Y+LIV DFI +
Sbjct: 296  ----LRNMCREGLYRRYDE-------PSEEALERMEYELSVINGMGYTDYYLIVWDFINY 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK ++IPVGPGRGSGAGS+ AY + ITDIDPLR+ LLFERFLNP+R++MPDFDIDFC + 
Sbjct: 345  AKSHDIPVGPGRGSGAGSLCAYCIGITDIDPLRYDLLFERFLNPERVTMPDFDIDFCVEG 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R  VI YV  KYG + VAQI TFG+L AK ALRD  RA+  PY+  DRL K  P      
Sbjct: 405  RQRVIDYVVEKYGADHVAQIATFGTLGAKQALRDAARAMGEPYATGDRLAKAAPRSMLLS 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             S++ I +    R+   +D  + ++++ +  +EG+ R+ STHAAG+VI   P+   VP+Y
Sbjct: 465  DSVEKIPE---LRDMYNSDMKLRKIIDTAILIEGMPRNVSTHAAGVVITKEPVDFYVPLY 521

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
               R     TQ+ M  +E+ GL+K DFLGL  LT+++   D + +     D+  IP DD 
Sbjct: 522  --ARDGAVSTQYTMTVLERLGLLKIDFLGLSNLTIIKHCCDEIKKTHPDFDIEHIPLDDK 579

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y +L+   T G+FQ ES GM   +  ++P  IED+IA++SLYRPGP+D+I  Y   ++
Sbjct: 580  AVYDMLSRGETEGVFQFESGGMTATIMKLRPSGIEDLIAVLSLYRPGPMDSIPNYIRCRH 639

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              + +   HP++ P+L+ T G I+YQEQVMQI + L+GYS + AD++RRAM KK  + ++
Sbjct: 640  DPKLVRYKHPMLKPILEVTYGCIVYQEQVMQIFRSLAGYSFARADLVRRAMSKKKADVLE 699

Query: 727  KQKERF------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             +++ F      + GA  NG+ +  A +IF+ +  FA Y FNKSHA AYA ++Y+TA++K
Sbjct: 700  NERKAFVWGDEEVCGAVANGVPEKTANDIFDEMTSFASYAFNKSHATAYATVAYRTAYLK 759

Query: 781  THYPVEFLAASMTLEM-DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
             H+  E+ ++ MT  + ++ EK+  +   AR+  + ++PP +N     F    + I + L
Sbjct: 760  CHFFKEYFSSLMTDAINESTEKLYGYISAARKRGVAVLPPDINKSIGGFSGEGDSIRFGL 819

Query: 840  AAIKGVGTTT-ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
              IKG+G+ + A  I E +    F +L+DFC R+  + ++ + +E+L+ AGA+D    +R
Sbjct: 820  LGIKGLGSNSIAAIIRERTLGGDFLNLQDFCRRMQGRDIHTKAVEALIKAGAMDPLPLNR 879

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFENEQ 956
             + L +   I         +R     + F      G   DK  ++   + +  +     +
Sbjct: 880  HEKLINCGIIMGDLSRAASDRLEGQLDFFGSGGASGDGLDKPMIDAEELTSEELLLYEHE 939

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-------RGNNIRLAAMVVSKQQKKT 1009
              LG Y S HP+D  +P  R  G      SV TI        G    +  MV  K+   T
Sbjct: 940  -ALGMYLSAHPIDTCEPFARAAGFT----SVRTILEAGLKGEGRTADILVMVTRKRSIAT 994

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            +KG  + +    +   E E   FP
Sbjct: 995  KKGDMMCFAACEDKTGEMEVIVFP 1018


>gi|258653337|ref|YP_003202493.1| DNA polymerase III subunit alpha [Nakamurella multipartita DSM 44233]
 gi|258556562|gb|ACV79504.1| DNA polymerase III, alpha subunit [Nakamurella multipartita DSM
            44233]
          Length = 1175

 Score =  629 bits (1622), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 386/1074 (35%), Positives = 588/1074 (54%), Gaps = 66/1074 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  + SFVHL VH+ YS+L+GA  L  +  + A    PA+A+TD  N+F A +F ++A A
Sbjct: 1    MSNTDSFVHLHVHTEYSMLDGAARLGELFARTAELGMPALAMTDHGNVFGAHDFYRQARA 60

Query: 65   AGIQPIIGCQLDIDMQDN------LKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIEL 115
            AG+ PIIG +  +    +      ++  + G        +   I LL  T +G   L  L
Sbjct: 61   AGVNPIIGMEAYLTPNTSRFDKTRVRWADGGDDDVSGAGAYTHITLLSETTQGMHNLFRL 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             SR  L +      R     L E  + GLI  TG  SG +       +   A      F+
Sbjct: 121  ASRASL-EGFFYKPRADRELLSEY-SAGLIGTTGCPSGEVQTWLRIGNYDKALASAAEFR 178

Query: 176  KLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             + G +  +V L  H G     R R+  +++LA   +LP++ATN+  + ++ D  AH+ L
Sbjct: 179  DILGKENYFVELMDH-GLSIETRVRDG-LIRLARDLQLPMIATNDLHYTNKADASAHEAL 236

Query: 232  MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQV 287
            + V     +   +R +    D YLK+ +EM ++++D   L EA +NT+ IA RCS     
Sbjct: 237  LCVQSGKTLDDPNRFKFDADDFYLKSPAEMRALWADKYDLREACDNTLLIAERCSVAFDE 296

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
             +  +PRF     +     E+     +   GL +R   G         + R++ D+E+ V
Sbjct: 297  ASSYMPRFPVPAGE----TEQTWFVKEVDKGLAIRFPGGI------PPEVRKQADYEVGV 346

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I  M F GYFL+VADFI WAK + I VGPGRGSGAGS+ AYA+ ITD++PL   L+FERF
Sbjct: 347  ITAMNFPGYFLVVADFINWAKDHGIRVGPGRGSGAGSMVAYAMRITDLNPLVHGLIFERF 406

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNPDR+SMPDFD+DF + RR +VIRYV  +YG +RVAQI+T+G+++AK A++D  R L M
Sbjct: 407  LNPDRVSMPDFDVDFDERRRGDVIRYVTERYGDDRVAQIVTYGTIKAKQAVKDSARVLGM 466

Query: 468  PYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            P+S  DR+ K++P              +P+ P   +     + FR     DP V ++++ 
Sbjct: 467  PFSVGDRITKVMPPPVMGKDVPLSKIFEPSDPRYNEG----TEFRTLVDTDPDVRKVVDT 522

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++ LEGL R    HAAG+++   PL  L+P+ +  +    +TQF+    EK GLIK DFL
Sbjct: 523  ARGLEGLKRQWGVHAAGVIMSSAPLLDLIPIMKREQDGAIITQFDYPTCEKLGLIKMDFL 582

Query: 575  GLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT+L  ++ +  A R + + L  +P DD  TY LL+   TLG+FQL+   MR  L 
Sbjct: 583  GLRNLTILDDAVGNIRANREIDLVLEDLPLDDKATYELLSRGDTLGVFQLDGGPMRALLR 642

Query: 634  GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQG 687
             M+PD  EDI A+++LYRPGP+  ++   Y +RK G++ +  IHP     +  +L +T G
Sbjct: 643  SMRPDNFEDISAVIALYRPGPMGANSHNEYADRKTGRKPVTPIHPELADALQDLLGDTYG 702

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQVM IAQ L+GY+L  AD+LRRAMGKK K E+D Q E F  G +  G S     
Sbjct: 703  LIVYQEQVMAIAQHLAGYTLGAADLLRRAMGKKKKAELDAQYETFSGGMAGRGYSPHAIK 762

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++++L  F+DY FNK+H+AAY ++SY TA++K +YP E++AA +T   D+ +K+  +  
Sbjct: 763  TLWDILLPFSDYAFNKAHSAAYGMLSYWTAYLKANYPAEYMAALLTSVGDDKDKMAIYLA 822

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLE 866
            + R   I++M P VN    +F      I + L+AI+ VGT     I+    DK  +    
Sbjct: 823  ECRSMGIKVMAPDVNASVQNFAPVGTDIRFGLSAIRNVGTGVVASIVACRKDKGAYTDFY 882

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNK 922
            DF  +VD+   N++V+ESL+ AGA D  G+ R  LL    +++D +    +     + + 
Sbjct: 883  DFLDKVDATACNKKVVESLIKAGAFDSMGHPRKGLLMDHVRAIDEVLGLKKAEAIGQFDL 942

Query: 923  HENIFAHEKG-TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
               +   EKG TF   +   ++   ++ +R   E+ +LG Y SGHPL   + IL      
Sbjct: 943  FGEMSQEEKGDTFRGNVPDTEW---DTKLRLGFEREMLGLYVSGHPLAGVEHILSAQSDA 999

Query: 982  GYEESV-ATIRGNN-IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               + +  TI     I +  ++ + Q++ T+KG      T  + A   E  FFP
Sbjct: 1000 SIPDVLDGTIPDRALITVGGILTNLQRRLTKKGDPWASATLEDLAGGVEVAFFP 1053


>gi|158314206|ref|YP_001506714.1| DNA polymerase III subunit alpha [Frankia sp. EAN1pec]
 gi|158109611|gb|ABW11808.1| DNA polymerase III, alpha subunit [Frankia sp. EAN1pec]
          Length = 1178

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 383/1080 (35%), Positives = 588/1080 (54%), Gaps = 82/1080 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA  L ++ ++++    PA+AITD   ++ A +F ++A AAG++P
Sbjct: 4    SFVHLHVHTEYSMLDGAARLKDMFNEVSRQGMPAVAITDHGYMYGAYDFYKQATAAGVKP 63

Query: 70   IIGCQLDIDMQDNL-KMTNQGKTPF---------PTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIGC+  +  +  L K   +   P           +   + +    AEG   L  L SR 
Sbjct: 64   IIGCEAYVAPESRLLKQRVRWGEPHQKSDDVSGGGSYTHMTIWARNAEGLHNLFRLNSRA 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTE---GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
             +     +  R+     QEI +E   GL+  TG  SG +           A K   T+++
Sbjct: 124  SIEGHYIKWPRMD----QEIISEHAAGLMATTGCPSGEVQTRLRLGQYDAALKAAATYQE 179

Query: 177  LFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            ++G D  Y  +  H    +R     +V +A   ++  V TN+S +  E +   H  L+ V
Sbjct: 180  IYGRDNYYCEIMDHGIEIERRVRDGLVDIARALDMRFVVTNDSHYTYESERTTHAALLCV 239

Query: 235  AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCS----FILQVH 288
              ++ V+          ++LK+  +M +I +     +  E T+ IA R      F  Q  
Sbjct: 240  QTASTVANPSFQFEGSGYFLKSAEQMYAIDTSDAWQQGCETTLMIAERVDPAGMFTKQ-- 297

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++PRF   E +     +E+  R +  AG+  R   G        +++R R+++EL VI
Sbjct: 298  -NLMPRFPVPEGE----TDESWFRKETWAGMARRFPDG------FDEEHRARVEYELGVI 346

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
              M F  YFL+VADFI WAK   IPVGPGRGS AGS+ A+AL ITD+DP+  SLLFERFL
Sbjct: 347  LAMGFPSYFLVVADFIMWAKSQGIPVGPGRGSAAGSMVAFALGITDLDPIPHSLLFERFL 406

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NPDR+SMPD DIDF + RR +VIRYV  K+G +R+AQI+T+G+++AKAA++D  R L  P
Sbjct: 407  NPDRVSMPDIDIDFDERRRGDVIRYVTEKWGDDRIAQIVTYGTIKAKAAIKDSSRVLGYP 466

Query: 469  YSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
            Y+  DR+ K +P              DP HP   +A       R    +D  V ++++ +
Sbjct: 467  YAVGDRITKAMPPAVMGKDIPLGGIFDPKHPRYSEA----GEIRGLYESDADVRKVIDTA 522

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + LEGL R A  HAAG+++   P+   +P++R       +TQF+    E  GL+K DFLG
Sbjct: 523  KGLEGLIRQAGVHAAGVIMSAEPIIDHIPVWRRDADGAIITQFDYPTCENLGLLKMDFLG 582

Query: 576  LKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L+ LT++  ++ +  A RG K+DL  +  +D  +Y LL    TLG+FQL+   MR  L  
Sbjct: 583  LRNLTVMDDAVRNVEANRGFKIDLMGLELNDAASYELLARGDTLGVFQLDGGPMRSLLRM 642

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGV 688
            M+PD  EDI A+++LYRPGP+  ++ + Y  RKNG+++I  IHP L +P+   L  T G+
Sbjct: 643  MRPDNFEDISAVLALYRPGPMGANSHINYALRKNGQQEITPIHPELAEPLADILDTTHGL 702

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQVM IAQ ++GY+L +AD+LRRAMGKK KE +DK+   F  G   +G S+     
Sbjct: 703  IVYQEQVMAIAQKVAGYTLGQADLLRRAMGKKKKEILDKEFVPFSDGMKSSGFSEAAIKT 762

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++++L  F+DY FNK+H A Y ++SY TA++K ++P E++AA +T   D+ +K   +  +
Sbjct: 763  LWDILVPFSDYAFNKAHTAGYGLVSYWTAYLKANFPAEYMAALLTSVRDDKDKSAIYLNE 822

Query: 809  ARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLE 866
             R+  I+++PP VNT   D+   GDN I   LAAI+ VG      I+     K  F S  
Sbjct: 823  CRRMGIRVLPPDVNTSDADYTAHGDNEIRVGLAAIRNVGINVVESIVRNRKTKSRFTSFP 882

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF  +VD+   N+R +ESL+ AGA D  G++R  L++  +        V+K       ++
Sbjct: 883  DFLDKVDAVACNKRTVESLIKAGAFDALGHTRRGLVEKHEQAVDAVMGVKKKNAEGQFDL 942

Query: 927  FAHEKGTFSDKITLEKFSVE-------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            FA + G  +++ T   F V+       + SV   +E+ +LG Y S HPL   + IL    
Sbjct: 943  FAFD-GEDAEEDTAPIFGVQEFSDQEWDKSVLLSHEREMLGLYVSDHPLLGVEHILAAKA 1001

Query: 980  IKGYEESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              G    +A++ G +      + +  ++ S Q+K T++G      T  +     E  FFP
Sbjct: 1002 DCG----IASLNGGDYPDGSVVTIGGIISSLQRKVTKQGKLWALATVEDLEGGLEVMFFP 1057


>gi|313897381|ref|ZP_07830924.1| DNA polymerase III subunit alpha [Clostridium sp. HGF2]
 gi|312957751|gb|EFR39376.1| DNA polymerase III subunit alpha [Clostridium sp. HGF2]
          Length = 1026

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 368/1027 (35%), Positives = 582/1027 (56%), Gaps = 47/1027 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL V S Y+LL+  L++  I+         A+A+TD + +  A+ F        I+PI 
Sbjct: 3    VHLHVRSCYTLLQSTLTIPKIVAAAKRCGYTAVALTDKHVMHGAMAFYHACKKENIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++D+  Q+ L                V+L     GYQ L++L +    L+ G++    
Sbjct: 63   GMEVDVLEQEELY-------------GFVVLAKNDAGYQNLLKLST---WLNTGEERRIP 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-R 190
             L  L     +  I+LT G    ++         +    L   +K F D  YV++ R+  
Sbjct: 107  DLDTLAYYAKD-CIVLTNGDQNQMETLIVKEELDLLRHWLKLCRKQFSD-FYVSIARNDS 164

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G    +   + Q+    ++P  A +   F  EED E++  L A+     +  K     +P
Sbjct: 165  GLMEKKNPVLKQVCKELDIPYTALSRIYFEREEDEESYKTLCAIDQGVSLHDK-MLNYSP 223

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              Y +   EM  ++ D  E L+ +  IA  C   +Q+   +LP+F  K         E  
Sbjct: 224  RRYFRTPQEMQLLYED--EELQMSDRIAALCQVEMQLPKAVLPKFQNK----YGVSSEEF 277

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR+    GL+ R+    I+  Y     +QRLD+EL+VI RM+++ YFLIV DFI++AK  
Sbjct: 278  LRSLCQKGLQKRMQYQPISSVY-----QQRLDYELDVIIRMQYADYFLIVWDFIRFAKTQ 332

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I +GPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D DF  +RRDEV
Sbjct: 333  HIYIGPGRGSAAGSLVAYCLGITHVDPIRYHLLFERFLNPERISMPDIDTDFPDNRRDEV 392

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I YV+  YG  RV+ IITF +L AK  LRDVG+A+++   Q+DRLCKL+PN     V+L 
Sbjct: 393  IHYVEQLYGKHRVSHIITFNTLAAKQVLRDVGKAMEINPRQIDRLCKLVPN--VIKVTLD 450

Query: 491  -AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A  +D+RF+E   +  ++ RL   ++KLEGL RHAS HAAGIV  D  + Q+ P+  DV
Sbjct: 451  YAYQNDARFKELINSGETMRRLYATARKLEGLPRHASLHAAGIVFSDEAIEQVCPLI-DV 509

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHET 608
               +  TQF M+++E+ GLIK DFLGL+ LT++ + +  + A    K+D+  IP DD +T
Sbjct: 510  DEGICATQFTMEYLEELGLIKMDFLGLRNLTIIDEIVQHINATADKKLDIMRIPLDDAKT 569

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y L+    T+G+FQLES GM+  +  MQP+C EDI+A ++L+RPGP++NI  Y +R+   
Sbjct: 570  YALIRAVDTVGVFQLESEGMKNLIRKMQPNCFEDIVATIALFRPGPMENIPEYLDRREHP 629

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EK+  IHP + P+L+ T G++IYQEQ+MQ+AQ ++G++L +AD LR+A+ KK  EE+ + 
Sbjct: 630  EKVDYIHPSLQPILQNTYGIMIYQEQIMQVAQTMAGFTLGKADNLRKAISKKKGEELRRM 689

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  FISGA + G  + +A  ++ L+ KFA+YGFN+SH+ AY +I+YQ A++K + P+ F 
Sbjct: 690  QAEFISGALRKGYDEALAQKVYALIMKFANYGFNRSHSVAYGMIAYQLAYLKANAPLYFF 749

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             + +   + +  K  ++  +AR+ NIQI+ P VN     + + DN + +    IKG+G+ 
Sbjct: 750  NSLLNSVIGSETKTSEYVFEARKRNIQILLPDVNRSHNQYGIEDNALRFPFVGIKGIGSA 809

Query: 849  TARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             +  I+E    K  F    DF +R++  K+ ++ +E L++AGALDCF   R  L+ SL++
Sbjct: 810  VSSLIVEERDKKGEFRDFFDFTARMNGNKIGKKTIEILIYAGALDCFKVGRASLMASLED 869

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA  V   +    + +           +T+ +   +N+++R E E+  +GFY S HP
Sbjct: 870  ALRYADLV---KIEDVDQVLFDFDLVSKPAMTMMR---DNATIRSEKEKEAIGFYLSRHP 923

Query: 968  L-DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            + DV   + + + I     S+   +G  ++   +V   +Q +T+ G  + +V  S+   +
Sbjct: 924  IADVRSRMGKDLPILI---SLPKYKGRYVKFVCLVDRCRQYRTKNGDMMMFVIGSDETGK 980

Query: 1027 YEANFFP 1033
            ++    P
Sbjct: 981  FDLVCMP 987


>gi|330444096|ref|YP_004377082.1| DNA polymerase III subunit alpha [Chlamydophila pecorum E58]
 gi|328807206|gb|AEB41379.1| DNA polymerase III alpha subunit [Chlamydophila pecorum E58]
          Length = 1241

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 378/1078 (35%), Positives = 593/1078 (55%), Gaps = 63/1078 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S++ L  HS YS+L+    + +++ +  A   PAIA+TD  NLF A++F +      I+P
Sbjct: 2    SWIPLHCHSQYSILDATCPIKDLVAQAKAYDIPAIALTDHGNLFGAIDFYKTCVQQEIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC+  I          + ++       ++LL    +GY+ L  L+S +  ++      
Sbjct: 62   ILGCECYIAPGSRFDKKKEKRSR--VAHHLILLCKNEQGYRNLC-LLSSLAFIEGFYYVP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L++  +EGL+ L+   S  +  A    S +  EK L  +++LF +  +  +Q H
Sbjct: 119  RIDKELLKK-HSEGLVCLSACLSSSVSEAAL-ESEEALEKELRWYQELFKENYFSEVQLH 176

Query: 190  R----------------GYDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +                 Y  + + Q      V++++    +P VATN+  +L  ED++A
Sbjct: 177  KMSEEKIASLPEEWLKQEYYNFIDKQTRVNTAVLEVSKRLGIPSVATNDIHYLHPEDWQA 236

Query: 228  HDVLMAVAHSTVVSQKDRPRVTP----------DHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+ +     +    +    P          + Y K+  +M+ +F+D+PE + NT+E+
Sbjct: 237  HEILLNIQSGETIRTAKQNTYIPNPKRKTYSSREFYFKSPQQMLELFADVPEVIANTLEV 296

Query: 278  ARRCSFIL---QVHAPI-LPRFIE-KECDDIQKEEENE---LRNKAVAGLEVRLAQ--GA 327
            A+ C       + H PI LP  ++ KE    Q   E     LR     GL     +    
Sbjct: 297  AKLCDVHFDFSKKHYPIYLPETLKTKEHYTEQDRYEASALFLRQLCEKGLSKYTPEVLAH 356

Query: 328  IAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
            IAK +  QD     +QR++ E+++I       Y LIV D I WAK +NIPVGPGRGSGAG
Sbjct: 357  IAKKFPNQDPLELVKQRMEMEMSIIIPKGMCDYLLIVWDIIHWAKAHNIPVGPGRGSGAG 416

Query: 384  SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            SV  + L IT+I+P+RF L FERF+NP+R+S PD DID C + R+EVI Y   K+G + V
Sbjct: 417  SVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMEGREEVINYAIEKHGKDNV 476

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
            AQIITFG+++AK A++DVGR L MP S+V+ + K IP   A     +++  D    +  +
Sbjct: 477  AQIITFGTMKAKMAIKDVGRTLDMPLSKVNTIAKHIPELNA--TLAKSLETDPDLHQLYI 534

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563
             D    ++++++ +LEG  R+   HAAG++I   PL+  +P+     S +  TQF+MK  
Sbjct: 535  DDVEAAQVIDMAMRLEGSIRNTGVHAAGVIICGEPLTNHIPVCISKDSSMITTQFSMKPA 594

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            E  G++K D LGLKTLT +  ++  + Q+  K + +  +P DD  T+ LL    T+G+FQ
Sbjct: 595  ESVGMLKVDLLGLKTLTSIHLAMSAIYQKTQKRLHMETLPLDDKMTFSLLHQGKTMGVFQ 654

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
            +ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++ +L
Sbjct: 655  MESKGMQELAKNLRPDSFEEIIAICALYRPGPMDMIPSFINRKHGKENIDYDHPLMESIL 714

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            KET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  ++M +++ +F   A+ NGI 
Sbjct: 715  KETYGIMVYQEQVMQIAGALANYSLGEGDVLRRAMGKKDHQQMVQERSKFCERAANNGID 774

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D+VEK+
Sbjct: 775  PDIATIIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPQEWLAALLTCDSDDVEKV 834

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKP 861
             K  ++A+  NI I+PP +N     F   +  I ++L AIKGVG +   H++ E     P
Sbjct: 835  GKLIREAQSMNIPILPPHINISSNHFVATNEGIRFALGAIKGVGKSFIEHLVKERELHGP 894

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + S++DF  R +  K++++ +ESLV AG  DCF  +R   L SLD +       +K    
Sbjct: 895  YRSIQDFIQRSNFTKISKKNMESLVDAGCFDCFEPNRDLALASLDALYNTVSKEKKEAAT 954

Query: 922  KHENIFA----HEKGTFSDKITLEKFSV-ENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                 F+    HE+      +   K  V        + E+ +LG Y + HP+D ++    
Sbjct: 955  GVMTFFSLDSMHEQNPLP--VAAPKDVVFRTKKELLKKEKELLGIYLTEHPMDAFRETFP 1012

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG-SRIGWVTFSEPAKEYEANFFP 1033
            ++ +  + E      G  IR   ++     K + KG  +   +  S+    YE   +P
Sbjct: 1013 RLSVVPFGEFENLSHGAVIRTVFIIDKITTKFSSKGQKKFAILRVSDGMDSYELPVWP 1070


>gi|288870429|ref|ZP_06114074.2| DNA polymerase III alpha subunit [Clostridium hathewayi DSM 13479]
 gi|288867209|gb|EFC99507.1| DNA polymerase III alpha subunit [Clostridium hathewayi DSM 13479]
          Length = 1171

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 380/1053 (36%), Positives = 578/1053 (54%), Gaps = 46/1053 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            ++ +F HL VH+ YSLL+G+  +  +  +       ++AITD   ++  ++F + A   G
Sbjct: 10   RNVAFTHLHVHTEYSLLDGSCKIKELTARAKELGMDSMAITDHGVMYGVIDFYRAAREVG 69

Query: 67   IQPIIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            I+PIIGC++ +       + T  G+  +     +VLL    +GYQ L+++VS+ ++ D  
Sbjct: 70   IKPIIGCEVYVTAGSRFDRETTNGEDRYY---HLVLLAENNQGYQNLMKIVSKGFV-DGF 125

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYV 184
                R+    L E   EG+I L+   +G + R       +  +   L ++++FG+   ++
Sbjct: 126  YYKPRVDYEVL-ETYHEGIIALSACLAGEVQRYIERGMYEQGKNAALRYQQIFGEGNFFL 184

Query: 185  NLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ H    ++  +Q +++++    + LVATN+  +   +D   HD+L+ +     V+ +
Sbjct: 185  ELQDHGIPAQHTVNQGLMRMSRETGIKLVATNDIHYTFADDATPHDILLCIQTGKKVTDE 244

Query: 244  DRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +R R     +Y K   EM  +F    EA++NT +IA RC+  ++     LPR+   E  D
Sbjct: 245  NRMRYEGGQYYCKTEEEMRKLFPYASEAIDNTHDIAERCNVEIEFGVTKLPRYDVPEGYD 304

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIV 360
                           G   +L    +AK Y   D   + RL++ELNVI  M +  YFLIV
Sbjct: 305  -------------SWGYLNKLCFEGLAKHYPDDDGTLKARLEYELNVIHTMGYVDYFLIV 351

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI +A+  +I VGPGRGS AGS+ +Y L IT+IDP+R++LLFERFLNP+R+SMPD DI
Sbjct: 352  WDFIHYARSQDIIVGPGRGSAAGSIVSYCLGITNIDPIRYNLLFERFLNPERVSMPDIDI 411

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC +RR EVI YV  KYG E+V QI+TFG+L AK  +RDVGR L MPY++ D + K+IP
Sbjct: 412  DFCFERRQEVIDYVVRKYGKEQVVQIVTFGTLAAKGVVRDVGRVLDMPYARCDAIAKMIP 471

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             D    +  +A+      R A   DP V  L+++S +LEGL RH S HAAG+VI    + 
Sbjct: 472  GDLGMTLE-KALKQSPDLRNAYNEDPEVKYLIDMSMRLEGLPRHTSMHAAGVVISRTSVD 530

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
            + VP+ +        TQF M  +E+ GL+K DFLGL+TLT++Q ++  + + RGV +D+ 
Sbjct: 531  EYVPLSK-AADGTITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVKAVEKNRGVVLDMD 589

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I +DD      + T    G+FQLESSGM+  ++ ++P  +EDIIA +SLYRPGP+D I 
Sbjct: 590  TIDYDDKAVLESIGTGKDDGVFQLESSGMKSFMKELKPQSLEDIIAGISLYRPGPMDFIP 649

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y   KN         P ++P+L  T G I+YQEQVMQI + L+GY++  +D++RRAM K
Sbjct: 650  KYLKGKNDPSSATYDCPQMEPILSPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSK 709

Query: 720  KIKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            K    M+K+++ F        + G   NGI +  A +I++ +  FA Y FNKSHAAAYAV
Sbjct: 710  KKTSVMEKERQNFVYGNPEEGVKGCIANGIDEKTANHIYDEMIDFAKYAFNKSHAAAYAV 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQTA++K +YP E++AA +T  MDNV K+ ++    RQ  I I+PP +N     F V 
Sbjct: 770  VSYQTAFLKYYYPQEYMAALLTSVMDNVTKVSEYILSCRQMGISILPPDINEGESGFSVS 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I Y L+AIK VG +    I+ E  +   F S+EDF  R+ +K++N+R LE+ + +GA
Sbjct: 830  GGAIRYGLSAIKSVGKSVVDLIVTERESSGLFTSIEDFVDRMSNKEVNKRTLENFIKSGA 889

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENS 948
            LD    +R Q +     +       +KN       +F  A E+     +IT         
Sbjct: 890  LDTLPGTRKQKILVAPELLDQRSKEKKNSMEGQLTLFDIASEEEKTRYQITFPNVGEFPK 949

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRK--------MGIKGYEESVATIRGNNIRLAAM 1000
                  E+  LG Y SGHPL+ Y+   R           +    E      G+ + +  M
Sbjct: 950  EELLAFEKEALGIYVSGHPLEAYETTWRNNITAVTIDFIVDEETEEARVKDGSYVTIGGM 1009

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  K  K TR    + ++T  +     E   FP
Sbjct: 1010 ITGKTVKTTRNNKLMAFLTLEDLVGSVEVIVFP 1042


>gi|269127115|ref|YP_003300485.1| DNA polymerase III subunit alpha [Thermomonospora curvata DSM 43183]
 gi|268312073|gb|ACY98447.1| DNA polymerase III, alpha subunit [Thermomonospora curvata DSM 43183]
          Length = 1177

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 387/1074 (36%), Positives = 591/1074 (55%), Gaps = 71/1074 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA  LN +  ++   + PAIA+TD  N+  A +F + A  AG+ P
Sbjct: 4    SFVHLHVHTEYSMLDGAARLNQLFAEVERQKMPAIAMTDHGNMHGAYDFWKHAKDAGVTP 63

Query: 70   IIGCQLDIDMQDNL-KMTNQGKTPFPT---------VPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  +  +    K   Q   P            +  + L      G   L +L SR 
Sbjct: 64   IIGIEAYMAPESRFHKKKVQWGEPSQKRDDVSGGGLINHMTLWARNKTGLHNLFKLSSRA 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            Y      +  R+    L E  +EG++  TG  SG I           A K   TF+++FG
Sbjct: 124  YTEGFVFKYARMDEELLAE-HSEGVMATTGCPSGKIQTRLRLGQFDEALKAAATFQEIFG 182

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +  ++ L  H    +R     ++++     +P V TN+S +  E +  AHD L+ V   
Sbjct: 183  KENYFLELMDHGLEIERRVRDGLLEIGKKLGIPPVVTNDSHYTHESEAAAHDALLCVQVG 242

Query: 238  TVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFI-LQVHAPILP 293
              +S  DR R     +YLK+  EM S+ S     E   NT+ IA R        H  ++P
Sbjct: 243  KQLSDPDRFRFDGTGYYLKSAEEMRSLDSSEVWAEGCRNTLLIAERVDPTGFFEHRNLMP 302

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            RF   E +     E +  R + + G++ R   G      + + +R+++++E+++I +M F
Sbjct: 303  RFPVPEGE----TEASWFRKEVMRGMDRRFPNG------YDEAHRRQVEYEIDIITQMGF 352

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DPL+  L+FERFLNP+R+
Sbjct: 353  PGYFLVVADFIMWAKNNGIAVGPGRGSAAGSLAAYALGITDLDPLQHGLIFERFLNPERV 412

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD D+DF + RR +VIRYV  K+G ++VA I TFG+++AKAA++D GR L  PY+  D
Sbjct: 413  SMPDIDVDFDERRRGDVIRYVTEKWGADKVAMIATFGTIKAKAAVKDAGRVLGFPYAMGD 472

Query: 474  RLCKLIPNDPA---HPVSLQAIADDSR--------FREARLADPSVDRLLEISQKLEGLY 522
            R+ K  P  PA     + L AI D++          R+    +  V ++L+++Q LEGL 
Sbjct: 473  RISKAFP--PAVMGKEIPLSAIFDENHPRYGEAGELRKMYEEEADVKQILDLAQGLEGLI 530

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   PL+  +P+ R       +TQF+    E  GL+K DFLGL+ LT++
Sbjct: 531  RQWGVHAAGVIMSSEPLTDHIPIMRRDSDGAIITQFDYPTCETLGLLKMDFLGLRNLTIM 590

Query: 583  QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              +L  + A +GV++DL  +P DD +T+ LL    TLG+FQL+   MR  L  M+PD  E
Sbjct: 591  DDALKAIKANKGVEIDLLKLPLDDKKTFELLARGDTLGVFQLDGGPMRALLRLMKPDNFE 650

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            DI A+++LYRPGP+  ++   Y  RKNG+++I  IHP ++  LK+    T G+I+YQEQV
Sbjct: 651  DISAVLALYRPGPMGANSHTNYALRKNGQQEITPIHPELEEPLKDILDTTYGLIVYQEQV 710

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M IAQ ++GY+L  AD+LRRAMGKK K E+DKQ E F  G  +NG S      ++++L  
Sbjct: 711  MAIAQRVAGYTLGGADLLRRAMGKKKKAELDKQFEFFEKGMRENGYSDEAIKALWDILLP 770

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            F+DY FNK+H A Y ++SY TA++K +YP E++AA +T   D+ +K   +  + R+  + 
Sbjct: 771  FSDYAFNKAHTAGYGLVSYWTAYLKANYPAEYMAALLTSVKDDKDKSALYLNECRRMGVT 830

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873
            ++PP VN    DF   GD  + + L+AI+ VG      I+ A  +K  F    DF ++V 
Sbjct: 831  VLPPDVNESDADFTPKGDAEVRFGLSAIRNVGENVVEAIIAARREKGAFTDFNDFLNKVP 890

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAH 929
            S+  N+RV+ESL+ AGA D  G+ R  LL    Q++D++      +++      +++F  
Sbjct: 891  SQVCNKRVVESLIKAGAFDSLGHRRRALLTVHEQAIDSVID----IKRKEAIGQDSLFGA 946

Query: 930  EKG---TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
              G   T +  +T+      + + +   E+ +LG Y S HPL   + IL K      + S
Sbjct: 947  LDGGEDTTAFSVTIPDEEEWDKTTKLSFEREMLGLYVSDHPLLGVEHILAKEA----DTS 1002

Query: 987  VATIRGNNIR-------LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +A + G + R       +A ++ + Q+K T++G+        +     E   FP
Sbjct: 1003 IAALTGESDRPDGQVVTVAGLLSNLQRKVTKQGNSWAMFQLEDLGGSIEVMCFP 1056


>gi|189346342|ref|YP_001942871.1| DNA polymerase III, alpha subunit [Chlorobium limicola DSM 245]
 gi|189340489|gb|ACD89892.1| DNA polymerase III, alpha subunit [Chlorobium limicola DSM 245]
          Length = 1189

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 378/1013 (37%), Positives = 564/1013 (55%), Gaps = 67/1013 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YS+    +    +          ++A+TD  ++F+  E    A  A ++ I
Sbjct: 3    FVHLHVHTHYSMQSSPVFPGELFSACRQLGMKSVAVTDYCSIFNMPELFSDAKKADVKLI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--LDQGKQS 128
            IG +L +         +Q K  F   PSI+LLV +  GY+ L  L+SR        G   
Sbjct: 63   IGTELFLLES---ATHSQAKNTFS--PSIILLVQSEAGYRNLCVLLSRASREGFINGTPH 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            +    S L E   +GLI L+  SSG I RA    S   AE     +K +FGD  Y+ LQR
Sbjct: 118  LE---SRLLEDHHDGLICLSAYSSGRIGRALLAGSLHEAETVTGYYKDIFGDNFYLELQR 174

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQKDRP 246
            H   +D    +  + LA    + LVATNN  +L  +D   +  ++A      + SQ  + 
Sbjct: 175  HATSFDDKLNAATIALAEKFSVELVATNNVHYLDRKDSGCYRAMIANRTKEKLSSQNLQA 234

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +HYLK   EM  IF D   AL N+  IA +C+++ +   PILP +      D   +
Sbjct: 235  LPGSEHYLKTAEEMARIFPDNGSALANSARIAEKCTYVFKKKEPILPHY---RLPDGFDD 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E   LR+    G   + A G+ A G   +D R R++ EL VI +M FS YFLIV+D I  
Sbjct: 292  EAKYLRHLTWEGAAEKYA-GSEADGITEEDVRARIELELGVIEKMGFSSYFLIVSDLISA 350

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++    VGPGRGS AGS+ AY   IT IDPL++ LLFERFLNP+R+SMPD DIDF    
Sbjct: 351  SRRMGYSVGPGRGSAAGSIVAYLTGITRIDPLKYKLLFERFLNPERLSMPDIDIDFTPVG 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            + +V+ Y   KYG + VA+++  G+L AKAA+RD GR L++P   VDRL KL+P  P   
Sbjct: 411  KQKVLEYTVEKYGDQSVAKVVAIGTLGAKAAIRDAGRVLEVPLPIVDRLAKLVPTKPG-- 468

Query: 487  VSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+ AI++    ++   + P   +LLE ++ LEG  R+ S HA  +VI D PL + VP+
Sbjct: 469  ITLEKAISEVRDLKQFVESSPENLKLLEYARALEGRARNVSMHAGAVVITDGPLEEQVPL 528

Query: 546  Y------RDVRS-----DLP------------------VTQFNMKWIEKAGLIKFDFLGL 576
            Y       +VR      DL                   VTQF+  WIE AGL+K D+LGL
Sbjct: 529  YVSNKIETEVRKYADEIDLDETVQIGVKGADGVDEKQIVTQFDKNWIETAGLLKIDYLGL 588

Query: 577  KTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            +TL ++ ++L  + +R  + +DL  +P +D +T+ +       GIFQ ESSGM+  +  +
Sbjct: 589  ETLAVIDETLHLIRRRHNIDIDLEKVPMNDRKTFRIFQEGKMAGIFQFESSGMQNYMTRL 648

Query: 636  QPDCIEDIIALVSLYRPGPID-------NIV-VYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            QP  I DIIA+ +LYRPG ++       N V ++ +RK+G+E I  +HP+++ +LKET G
Sbjct: 649  QPTQIGDIIAMSALYRPGALNARIDENRNAVDLFVDRKHGRESIDYMHPMLEEILKETYG 708

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            VI+YQEQVMQI+Q++ G+S+++AD LR+AMGKK+ E M++ K  F+SG    G+  T+A 
Sbjct: 709  VIVYQEQVMQISQVMGGFSMAKADNLRKAMGKKMPEIMEQFKADFVSGGVAQGVHDTLAT 768

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             +FEL+A+FA YGFNKSH+AAY V++Y T ++K HY  EF+ A +  E+ + +++K    
Sbjct: 769  RVFELMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTAEFMTAILNSEIGDTDRMKHLTD 828

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEASADKPFD 863
            +A+ F I  +PPS+N     F + D++    I   L+AIK VG   AR ++ +   K  D
Sbjct: 829  EAKSFGIMTLPPSINKSDTLFAIEDDKGKPCIRVGLSAIKQVG-GAARAVVTSRLRKKRD 887

Query: 864  --SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
              +L D  + VD + +NR+ LE L+ AG+ D    +R +LL ++D   K+ Q   ++ T 
Sbjct: 888  FLNLFDLTASVDLRVMNRKALECLILAGSFDELDSNRAKLLANVDKAIKFGQMQNRSVTL 947

Query: 922  KHENIFAHEKGTFSDKI---TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
                 F  E G   + +    L+       S +   E++++GFY S HPL  Y
Sbjct: 948  GQCGFFTSEAGGTGEDVHYPDLDPADPMPESEKLLQEKKLVGFYLSRHPLSPY 1000


>gi|194336619|ref|YP_002018413.1| DNA polymerase III, alpha subunit [Pelodictyon phaeoclathratiforme
            BU-1]
 gi|194309096|gb|ACF43796.1| DNA polymerase III, alpha subunit [Pelodictyon phaeoclathratiforme
            BU-1]
          Length = 1189

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 378/1014 (37%), Positives = 572/1014 (56%), Gaps = 67/1014 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL  H+ YS+    +  + I          ++A+TD   +F+  E   +A +AGI+ I
Sbjct: 3    FIHLHAHTHYSMQSSPIFPDEIFSAAVKFGMKSVAVTDYCAMFNMPELFSEAKSAGIKLI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--LDQGKQS 128
            IG +L +     L+      +  P  PS+VLLV    GY+ L  L+SR        G   
Sbjct: 63   IGSELLL-----LETDAHQHSRIPVSPSLVLLVQNDAGYRNLCILLSRAAREGFVNGMPH 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            +    S L E   EGLI L+  S+G I RA    ++  AE     +K++FGDR Y+ LQR
Sbjct: 118  IE---SRLLESCHEGLIALSAYSAGRIGRALLAGATDEAETFAAYYKQIFGDRFYLELQR 174

Query: 189  HRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
            H   +D     Q + LA    + LVATNN  +L  +D + +  ++A      +S ++ + 
Sbjct: 175  HNTPFDDKLNEQTIALAEKLGIELVATNNVHYLERKDADCYRAMVANRTKEKLSNQNLQA 234

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                DHYLK+  EM ++FSD    L NT  IA +CS+      PILP F   E  +    
Sbjct: 235  LAGSDHYLKSSGEMSALFSDAHRELSNTALIAGKCSYSFSDKEPILPHFPLPEGFE---S 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E   LR+  + G + + A  A A G  A+D R R++ EL VI +M FS YFLIV+D I  
Sbjct: 292  EFAYLRHLTLEGAKEKYAD-ADADGISAEDVRARIELELGVIEKMGFSSYFLIVSDLIAA 350

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++    VGPGRGS AGS+ AY   IT IDPL++ LLFERFLNP+R SMPD DIDF    
Sbjct: 351  SRRLGYSVGPGRGSAAGSIVAYLTGITRIDPLKYKLLFERFLNPERSSMPDIDIDFTPVG 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            + +V+ Y   KYG E VA++I  G+  AKAA+RD GR L++P   VD+L KL+P  P   
Sbjct: 411  KQKVLEYTVEKYGTESVAKVIAIGTFAAKAAIRDAGRVLEVPLPLVDKLAKLVPVKPG-- 468

Query: 487  VSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+ A+++    ++   + P +  L+  ++ LEG  R+ S HA  +VI D  L + VP+
Sbjct: 469  ITLEKALSEAKEMQQFAESTPELRELIRYARALEGRARNVSMHAGAVVITDGRLEEQVPL 528

Query: 546  Y------RDVRS-------DLP----------------VTQFNMKWIEKAGLIKFDFLGL 576
            Y       +VR        D P                VTQF+  WIE +GL+K D+LGL
Sbjct: 529  YVSNKIETEVRKFADEIDLDEPDHVRGKASDGSEEKQVVTQFDKNWIETSGLLKIDYLGL 588

Query: 577  KTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            +TL ++ ++L  + +R  + ++L  +P +D +T+ +       GIFQ ESSGM+  +  +
Sbjct: 589  ETLAVIDETLKMIKRRHNLDIELEKVPMNDRKTFRIFQEGKMAGIFQFESSGMQSYMTRL 648

Query: 636  QPDCIEDIIALVSLYRPGPID-------NIV-VYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            QP  I DIIA+ +LYRPG ++       N V ++ +RK+G+E I  +HP+++ +LKET G
Sbjct: 649  QPTQIGDIIAMSALYRPGALNARIDEKRNAVDLFVDRKHGREAIDYMHPMLETILKETYG 708

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            VI+YQEQVMQI+Q++ G+SL++AD LR+AMGKK  E M+K K  F+ GA K G+  T+A 
Sbjct: 709  VIVYQEQVMQISQVMGGFSLAKADNLRKAMGKKKPEIMEKYKADFVQGAIKQGVHDTLAT 768

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             +FEL+A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A +  E+ ++E++K    
Sbjct: 769  RVFELMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFVTAVLNSEIGDIERMKHLTD 828

Query: 808  DARQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASA--DKP 861
            +A+ F I  +PPS+N     F V    G + I   L+AIK VG   AR ++ +     + 
Sbjct: 829  EAKSFGISTLPPSINKSDALFAVEDAGGRSFIRVGLSAIKQVG-AAARAVVTSRLRRKRD 887

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F +L D  + VD + +NR+ LE L+ +GA D     R +LL ++D   K+ Q   ++ T 
Sbjct: 888  FVNLFDLAASVDLRVMNRKALECLILSGAFDEIDQHRARLLANVDKAFKFGQMQNRSVTL 947

Query: 922  KHENIFAHEKGTFSDKI---TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
                 F  E+G   ++     ++   +   + +  +E++++GFY S HPL  Y+
Sbjct: 948  GQCGFFTAEEGAELEEAHYPDMDAAEMMPEAEKLLHEKKLVGFYLSHHPLSPYR 1001


>gi|152967131|ref|YP_001362915.1| DNA polymerase III subunit alpha [Kineococcus radiotolerans SRS30216]
 gi|151361648|gb|ABS04651.1| DNA polymerase III, alpha subunit [Kineococcus radiotolerans
            SRS30216]
          Length = 1180

 Score =  626 bits (1614), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 387/1077 (35%), Positives = 577/1077 (53%), Gaps = 67/1077 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  + SF HL VH+ YS+L+GA  ++++    A    PA+A TD   +F A +F + A  
Sbjct: 1    MASADSFAHLHVHTEYSMLDGAAKVDDLFRTAAEMGMPAVATTDHGFVFGAYDFWKTAKK 60

Query: 65   AGIQPIIGCQLDID----MQDNLKM--------TNQGKTPFPTVPSIVLLVSTAEGYQRL 112
             G++PIIG +  +      QD  ++        +    +   +   + +L     G   L
Sbjct: 61   HGVKPIIGVEAYLTPGTARQDKTRVKWGDPNGRSGDDVSGAGSYTHMTMLAQNTAGMHNL 120

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             ++ S +  L+      R+    L +  + GLI  TG  SG +           A K   
Sbjct: 121  FKM-SSLASLEGFLYKPRMDRELLSQY-SAGLIATTGCPSGEVQTRLRLGQYDEARKAAA 178

Query: 173  TFKKLFG-DRLYVNLQRHRGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHD 229
             ++ +FG +  +  L  H G D  R  Q   L    +L  PL+ATN+  +    D +AH 
Sbjct: 179  DYRDIFGAENFFCELMDH-GLDIERRVQDDLLKLAKDLDLPLLATNDLHYTHAGDSQAHA 237

Query: 230  VLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSF-ILQV 287
             L+ V   + ++   R +   D  YLK+ +EM  ++ D PEA +NT+ IA RC     + 
Sbjct: 238  ALLCVQSGSTLADPKRFKFDADEFYLKSPAEMRHVWRDHPEACDNTLLIAERCEVEFTES 297

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                +PRF   E +D    EE+    +  +GL  R   G         D R++ D+E+ V
Sbjct: 298  TGAYMPRFPCPEGED----EESWFVKEVWSGLAQRYPAGI------PDDVRKQADYEIEV 347

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I    ++GYFL+VADFI W+K+N I VGPGRGSGAGS+ AYA+ ITD+DPLR  L FERF
Sbjct: 348  ITSKGYAGYFLVVADFINWSKENGIRVGPGRGSGAGSMAAYAMKITDLDPLRHGLFFERF 407

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+RMSMPDFD+DF + RR EVI+YV  KYG +RVAQI+T+G+++AK A++D  R L  
Sbjct: 408  LNPERMSMPDFDVDFDERRRGEVIQYVVEKYGTDRVAQIVTYGTIKAKQAVKDSSRVLGF 467

Query: 468  PYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            P+S  DR+ K +P              DP H    +  ++   FRE   +DP V ++++ 
Sbjct: 468  PFSMGDRITKTMPPAVMGKDIPLSGIFDPNH----KRYSEAGEFRELYKSDPEVVKVVDT 523

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++ LEGL R    HAAG+++   PL  L+P+ +       +TQF+    E  GL+K DFL
Sbjct: 524  ARGLEGLKRQWGVHAAGVIMSSDPLIDLIPIMKREADGAIITQFDYPTCETLGLVKMDFL 583

Query: 575  GLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT+L  +L  +   G + VDL  +  DD  T+ LL    TLG+FQ +   MR  L 
Sbjct: 584  GLRNLTILDDALKNVVANGKEAVDLDALELDDQATFDLLGRGDTLGVFQFDGGPMRSLLR 643

Query: 634  GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQG 687
             M+PD  EDI A+ +LYRPGP+   +   Y  RKNG+E I  IHP ++  LKE    T G
Sbjct: 644  LMRPDNFEDISAVGALYRPGPMGAGSHTAYARRKNGQEPITPIHPELEEPLKEILGTTYG 703

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQVM IAQ ++GYSL  AD+LRRAMGKK +E +D +   F  G   NG SK    
Sbjct: 704  LIVYQEQVMSIAQKVAGYSLGSADLLRRAMGKKKREVLDAEYVGFEKGMLDNGFSKECVK 763

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++++L  F+DY FNK+H+AAY ++SY TA++K +YP E++AA +T   D+ +K   +  
Sbjct: 764  ALWDILVPFSDYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAAVLTSVRDDKDKSALYLN 823

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLE 866
            + R+  IQ++PP VN    +F      I + L AI+ VG      ++EA A+K  ++S  
Sbjct: 824  ECRRMGIQVLPPDVNESSANFTAVGADIRFGLTAIRNVGANVVDAVVEARAEKGRYESFT 883

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF ++V +   N+R +ESL+ AGA D  G+ R  L+   ++       V++N      ++
Sbjct: 884  DFLTKVPAVVCNKRTIESLIKAGAFDSLGHRRRALVAKHEDAVDAVVDVKRNEAIGQFDL 943

Query: 927  FAHEKGTFSDKITLEKFSVE-------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            FA       D      F VE         +    +E+++LG Y S HPL   + +L    
Sbjct: 944  FAGL--GGDDDGGAGGFHVEIPDLPEWEKAELLAHERQMLGLYVSDHPLFGLERLLANAS 1001

Query: 980  ---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               I    E  +   G+NI +A M+   Q+K T++G+    VT  + A   E  FFP
Sbjct: 1002 DVPIATLLEDESRPDGSNITIAGMITGLQRKTTKQGNYWAIVTVEDLAGAIECLFFP 1058


>gi|254458525|ref|ZP_05071950.1| DNA polymerase III, alpha subunit [Campylobacterales bacterium GD 1]
 gi|207084833|gb|EDZ62120.1| DNA polymerase III, alpha subunit [Campylobacterales bacterium GD 1]
          Length = 1167

 Score =  625 bits (1613), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 388/1044 (37%), Positives = 588/1044 (56%), Gaps = 84/1044 (8%)

Query: 43   AIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            ++A+TD  N+F A++F  +  AA I+PIIG +  I   + L      K  F     I L 
Sbjct: 3    SVAMTDHGNMFGAIDFYHQMKAADIKPIIGMEGYIHNGETLD-DKSTKQRF----HICLF 57

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAF-F 160
                +GY+ L+ L S+ ++  +G     RI    L    +EGLI  +    G ++     
Sbjct: 58   AKNKKGYENLMYLSSKAFI--EGMYYFPRINKKELAA-HSEGLICTSACLQGEVNWHLNL 114

Query: 161  FNSSQV---------AEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELP 210
             N   V         A+   L +K++FGD  Y+ L RH   D+ + ++++++++    + 
Sbjct: 115  ANERNVRNGALGYEGAKAVALEYKEIFGDDFYLELMRHGIGDQLFIDNEILKISKETGIK 174

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPE 269
            +VATN++ +    D + H+  M +  + +    +R R +  + YLK+  +M  +F+D+PE
Sbjct: 175  IVATNDTHYTYPGDAQYHEAFMCIGMNKLYDDPNRMRHSVHEFYLKSPEQMARLFADIPE 234

Query: 270  ALENTVEIARRC-SFILQVHAPILPRFI---EKECDD---IQKEEENELRNKAVA----- 317
            AL +T EI  +   F + V  PI P F    E   +D   I  E++  L   A A     
Sbjct: 235  ALAHTQEIVDKIEDFSITVKEPIPPNFKFTPEYAANDGLAINHEDDAPLSADASAEDKKK 294

Query: 318  -------------------GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                               GL+ RL    I       +YR+RL+FE+N+I  MKF GY L
Sbjct: 295  WFSGIDKNDAEYFTFCCKRGLDNRLK---IVPQEKHDEYRERLEFEINIINSMKFPGYML 351

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DF++ AK   I VGPGRGS AGS+ AY+L ITDIDP+++ LLFERFLNP+R+SMPD 
Sbjct: 352  IVWDFVKVAKDRGIAVGPGRGSAAGSLVAYSLDITDIDPMKYDLLFERFLNPERVSMPDI 411

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF Q RR EVI YV  KYG  +VAQIITFGSL AK  +RDV R L MP SQ D++ KL
Sbjct: 412  DMDFMQARRGEVIDYVVEKYGRNQVAQIITFGSLLAKGVIRDVARVLDMPLSQADKMAKL 471

Query: 479  IPNDPAHPVSLQ---------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            IP++    ++ +         A   + + RE   +D +  R+ E ++KLEGL R++  HA
Sbjct: 472  IPDELGITLNGKTKNGEFIDGAFQKEPKLRELIDSDANSKRVWEFAKKLEGLKRNSGIHA 531

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            AG+VI +  L    P+Y+       VTQ+++ ++E   LIKFDFLGLKTL ++  ++  +
Sbjct: 532  AGVVISNEELWYKTPIYKPSGETTFVTQYSLNYLEDVDLIKFDFLGLKTLDVIDNAIKLV 591

Query: 590  AQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             +R  K V  + I  +D + Y ++ T  T+G+FQ+ESSGM+   + ++PD  ED+IA+++
Sbjct: 592  KRRFDKDVIWNQIDENDPKVYEVIRTGETVGMFQIESSGMQDLNKRLKPDSFEDLIAVLA 651

Query: 649  LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            LYRPGP+++ ++  +  RK+G+E I      ++ +L +T GVI+YQEQVMQI Q + G+S
Sbjct: 652  LYRPGPMESGMLDSFIERKHGRETIEYTFDTMETILGKTYGVIVYQEQVMQIVQTIGGFS 711

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  +D++RRAMGK  K++M      F  GA K G     A  +F+L+ KFA YGFNKSH+
Sbjct: 712  LGYSDIIRRAMGK--KKDMSVFNHEFSDGAQKQGYDYDKASKLFDLIEKFAGYGFNKSHS 769

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++++QTAW+KT+YP EF+AA +T + DN EK+ ++  + R+  I++ PP VN   +
Sbjct: 770  AAYAMVTFQTAWLKTYYPNEFMAALLTSDKDNTEKVVRYIDEVRRMGIELAPPDVNDSYL 829

Query: 827  DF----KVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRV 881
            +F    K   + I + L AIKGVG      I++    D  F S+E+F +R+D  K+N+R 
Sbjct: 830  EFSAITKDEKDIILFGLGAIKGVGGAAVESIIQTREEDGEFTSIENFVNRIDPSKVNKRF 889

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            +ES + +G  D FGYSR  LL  ++ I   A+     R N   ++F  +     ++IT  
Sbjct: 890  VESSIKSGGFDRFGYSRKALLDQIELIVDTAKDASTARKNAVGSLFGDD-----EEITTV 944

Query: 942  KFSVENSSVR-----FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            K S++NS         E E+  LGFY SGHPLD Y+  L ++      E      G    
Sbjct: 945  KLSLKNSDEYELKEILEFEKDTLGFYVSGHPLDEYRDKLDELNYSLSSELEGIKDGTFAI 1004

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTF 1020
                V   Q+K ++KG++ G V+ 
Sbjct: 1005 FIGKVEEIQKKVSKKGNQFGIVSL 1028


>gi|309775411|ref|ZP_07670414.1| DNA polymerase III, alpha subunit [Erysipelotrichaceae bacterium
            3_1_53]
 gi|308916800|gb|EFP62537.1| DNA polymerase III, alpha subunit [Erysipelotrichaceae bacterium
            3_1_53]
          Length = 1026

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 365/1029 (35%), Positives = 587/1029 (57%), Gaps = 51/1029 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL V S Y+LL+  L++  I          A+A+TD + +  A+ F        I+PI 
Sbjct: 3    VHLHVRSCYTLLQSTLTVAKIAAAAKRCGYTAVALTDKHVMHGAMAFYHACKKEQIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++D+  +D+             V   VLL     GYQ L++L +    L+ G+++  +
Sbjct: 63   GMEVDVLEKDD-------------VYGFVLLAKNDHGYQNLMKLST---WLNTGEETRTL 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-R 190
             L  L     +  I++T G    ++         +    L   +  F D  YV + R+  
Sbjct: 107  DLDTLA-FYAKDCIVITNGDQNQMETLIVKEELDLLRHWLKVCQAQFAD-FYVAVSRNDS 164

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVT 249
            G  + +   + QL     +P  A +   F   ED E++  L A+     VS +D+    +
Sbjct: 165  GLMQKKNPVLKQLCKELGIPYTALSRVYFEYAEDEESYKTLCAIDQG--VSLQDKMLNYS 222

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P  Y ++ +EM +++ D  E L  +  IA  C+  +     +LP+F  K         E 
Sbjct: 223  PRRYFRSPAEMQALYED--EELAMSDHIAAMCNVEMSFPKAVLPKFHNK----YGVSSEE 276

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR+    GL+ R+    I+  Y     +QRLD+EL+VI RM+++ YFLIV DFI++AK 
Sbjct: 277  FLRSLCQKGLQKRMQFQTISDVY-----QQRLDYELDVIIRMQYADYFLIVWDFIRFAKT 331

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             +I +GPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D DF  +RRDE
Sbjct: 332  QHIYIGPGRGSAAGSLVAYCLGITHVDPIRYHLLFERFLNPERISMPDIDTDFPDNRRDE 391

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VIRYV+  YG  RV+ IITF +L AK  LRDVG+A+++   Q+DRLCKL+PN     +  
Sbjct: 392  VIRYVEELYGKHRVSHIITFNTLAAKQVLRDVGKAMEINPRQIDRLCKLVPNVLKATLDF 451

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A  ++ RF+E      ++ RL  +++KLEGL RHAS HAAGIV  +  + Q+ P+  DV
Sbjct: 452  -AYHNEPRFKEIINNGETMGRLYAVARKLEGLPRHASLHAAGIVFSNEDIEQVCPLI-DV 509

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHET 608
               +  TQF M+++E+ GLIK DFLGL+ LT++ + +  + A    K+D+  IP DD +T
Sbjct: 510  DEGVCATQFTMEYLEELGLIKMDFLGLRNLTIIDEIVQHINAASDQKLDIMHIPLDDPKT 569

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y L+    T+G+FQLES GM+  +  MQP   EDI+A ++L+RPGP++NI  Y +R+   
Sbjct: 570  YALIRAVDTVGVFQLESEGMKNLIRKMQPKSFEDIVATIALFRPGPMENIPEYLDRRAHP 629

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EK+  IHP + P+L+ T G++IYQEQ+MQ+AQ ++G++L +AD LR+A+ KK  +E+ K 
Sbjct: 630  EKVDYIHPSLQPILQNTYGIMIYQEQIMQVAQTMAGFTLGKADNLRKAISKKKGDELQKM 689

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI GA + G ++ +A  ++ L+ KFA+YGFN+SH+ AY +I+YQ A++K + P+ F 
Sbjct: 690  REEFIQGALQKGYTEALAQRVYALIMKFANYGFNRSHSVAYGMIAYQLAYLKANAPLYFF 749

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             + +   + +  K  ++  +AR+  IQI+ P VN  C  + + +N + +    IKG+G+ 
Sbjct: 750  NSLLNSVIGSETKTSEYVFEARKRRIQILLPDVNRSCNQYVIEENALRFPFVGIKGIGSA 809

Query: 849  TARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             +  I+E    K  F    DF +R++  K+ ++ +E L++AGALDCF ++R  L+ SLD+
Sbjct: 810  VSSQIVEERKKKGQFRDFFDFTARMNGNKIGKKTIEILIYAGALDCFKFARASLMASLDD 869

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSG 965
              +YA  V+    ++    F        D ++    +V  +N+++R E E+  +GFY S 
Sbjct: 870  ALRYADLVKIEDVDQVLFDF--------DLVSKPAMTVVKDNAAIRAEKEKEAIGFYLSR 921

Query: 966  HPL-DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            HP+ DV   + R++ +     S+   +G  ++   ++   +Q +T+ G  + +V  S+  
Sbjct: 922  HPIADVRSKMGRELPVL---VSLPKHKGRYVKFVCLIDRCRQYRTKNGDMMMFVVGSDET 978

Query: 1025 KEYEANFFP 1033
             +++    P
Sbjct: 979  GKFDLVCMP 987


>gi|116515088|ref|YP_802717.1| DNA polymerase III, a subunit [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256942|gb|ABJ90624.1| DNA polymerase III, a subunit [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 1172

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 384/999 (38%), Positives = 573/999 (57%), Gaps = 71/999 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVH+++HS YS+++G +    +++         + ITD +NL   ++F   AC  GI+PI
Sbjct: 6   FVHIRIHSDYSMIDGIIKPKKLVEYAKLMNMKVLGITDISNLHGVIKFYSSACKLGIKPI 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG  + +            K       ++ LL     GY  +I+L+S  Y      QS  
Sbjct: 66  IGVDIIV----------SSKFEQNVFSNLTLLARNNIGYNNIIKLLSESY------QS-- 107

Query: 131 ICLSWLQEIGT-----------EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
               +   IG            +GL++L+GG  G I +  F N  ++  K LL +KK F 
Sbjct: 108 ---GYDNNIGLVIKIDDLLKYRKGLLVLSGGIKGNIGKCIFNNKKKLLYKYLLFYKKYFL 164

Query: 180 DRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
           ++ Y+ + R     +      +  ++Y   LP+VATN  LFL ++D++ H + +A+    
Sbjct: 165 NKFYLEISRLGYEKEEEYIIYIKYISYKFSLPIVATNEVLFLKKKDFQVHKIKVAIYKKK 224

Query: 239 VVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            +S  +   + T + +L+   EM+ IF D PEA+ N+ EI++RC+ I+   +  LP F  
Sbjct: 225 TISDSNFVYKYTENQFLRKNDEMIKIFHDCPEAIINSFEISKRCNVIIPSGSYFLPLFPT 284

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFS 354
              +       +    K+  GL+ RL    + K    +    Y  RL++EL +I +M F 
Sbjct: 285 GSIN-----LYDFFVKKSKEGLKKRLKTIYLNKNKREKKKDIYFSRLEYELLIIKKMGFI 339

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFLIV +FIQWAKKNNIPVGPGRGSG+GS+ ++AL IT+IDPL+F+LLFERFLNP+R+S
Sbjct: 340 SYFLIVMEFIQWAKKNNIPVGPGRGSGSGSLVSFALNITEIDPLKFNLLFERFLNPNRIS 399

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           +PDFDIDFC ++RD VI +V  KYG   VAQIITFG++ AKA +RDVGR L  PY  +++
Sbjct: 400 LPDFDIDFCMNKRDLVIDHVSKKYGRNSVAQIITFGTMAAKAVVRDVGRVLGYPYGLINK 459

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           + KLIP D    +  +A +      +    +  + +L+ IS+KLEG+ ++   HA G+VI
Sbjct: 460 ISKLIPLDSNMNLK-KAFSIKKELIDLYHHNNDIKKLINISKKLEGVIKNIGKHAGGVVI 518

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
               +S  +P+  D   +  VTQF+   +E  GL+KFDFLGLKTLT++   +  + ++  
Sbjct: 519 SPTKISDFIPIICDHLGNNQVTQFDKNDVEFVGLVKFDFLGLKTLTMIDMIIKRINKKDK 578

Query: 595 KVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                 L+ I   + +++ LL    T  +FQLES GMR  ++ ++PD  EDI++LV+LYR
Sbjct: 579 IKKKFFLNKISLKNKKSFLLLKKSETTSVFQLESIGMRNLIKRLKPDSFEDIVSLVALYR 638

Query: 652 PGPIDNIVVYN--NRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
           PGP+ + +V N  NRK+GKEKI        H  + P+LK T G+I+YQEQVMQIAQ+LS 
Sbjct: 639 PGPLQSGMVDNFINRKHGKEKISYPDSKWQHKWLKPILKSTYGIILYQEQVMQIAQILSN 698

Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
           ++ SEAD+LRRAM KK  +EM +QK+ F SGA +N I   ++  IF LL KF+ YGFNKS
Sbjct: 699 FTPSEADILRRAMAKKNPKEMMRQKKLFQSGAKENLIDVNLSKKIFYLLEKFSSYGFNKS 758

Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
           H+  YA+++YQT W+K +YP EF+ ++MTL+M N  KI     DAR+  ++I+PP+VN  
Sbjct: 759 HSVTYALLAYQTLWLKANYPSEFMVSAMTLDMTNTNKIVNLIYDARRMKLKIIPPNVNIS 818

Query: 825 CVDF---KVGDNRIYYSLAAIKGVGTTTARHIMEASADK--PFDSLEDFCSRVDSKKLNR 879
              F   K GD  I Y L AIKG+G ++   I+E    K   F S  DFC  +  KK+ R
Sbjct: 819 NYSFSINKYGD--IIYGLGAIKGLGKSSIDIIIEERKKKNNAFFSFLDFCVCLLLKKITR 876

Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            V E L+ +GA DCF   R++L   ++ + K A+    N     +N   +    F  KI+
Sbjct: 877 HVFEILIMSGACDCFNICRVELFNKIEYLLKLAKQKISN-IQLQQNNLFNFNNDFFQKIS 935

Query: 940 LEKFSVENSSVRFE----------NEQRVLGFYFSGHPL 968
           ++ +  E +   FE           E+ +LG Y S HP+
Sbjct: 936 IKNYKKEKNFYNFELYNIFLKKLQWEKEILGLYLSNHPI 974


>gi|160893094|ref|ZP_02073882.1| hypothetical protein CLOL250_00640 [Clostridium sp. L2-50]
 gi|156865177|gb|EDO58608.1| hypothetical protein CLOL250_00640 [Clostridium sp. L2-50]
          Length = 1183

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 387/1049 (36%), Positives = 598/1049 (57%), Gaps = 46/1049 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G+  + +++ +       ++AITD   ++  ++F + A A GI+PI
Sbjct: 3    FTHLHVHTEYSLLDGSAKIKSLVKRAKELGYDSLAITDHGVMYGVIDFYEAARAEGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IGC++ +         N +G+  +     +VLL    +GY+ L ++VSR +  +      
Sbjct: 63   IGCEIYVSPGSRFDRENTRGEERYY---HLVLLAENNQGYKNLSKIVSRGFT-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-VNLQR 188
            R+ +  L++   EG+I L+   +G +      N+ + A++  L   K+FG+  Y + +Q 
Sbjct: 119  RVDMEVLEQY-HEGIIALSACLAGEVAVNLRKNNYEEAKEAALRHLKIFGENNYFLEMQD 177

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++    + V++L+    +P+V TN+S ++  ED+EAHDVL+ +  +  V  +DR R
Sbjct: 178  HGLAEQATVNAGVMRLSKELGIPMVVTNDSHYILAEDWEAHDVLLCIQTNRKVHDEDRMR 237

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             T   +YLK++ EM  +F    EAL NT +IA RC+  +      +P F     D +  E
Sbjct: 238  YTGGQYYLKSKEEMYKLFPYAKEALANTQKIADRCNVEIVFGEQKVPEF--DVPDGLTAE 295

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            E  E           +L    I K Y+    +  +RL +E+N I +M +  YFLIV+DFI
Sbjct: 296  EYLE-----------KLCMEGIRKRYNPVTPELMERLTYEINTIKKMGYVDYFLIVSDFI 344

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++AK + I VGPGRGS AGS+ AY L IT+IDP+R++LLFERFLNP+R+SMPD D+DFC 
Sbjct: 345  RYAKDHGIAVGPGRGSAAGSIVAYCLEITNIDPIRYNLLFERFLNPERVSMPDIDVDFCY 404

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YV  KYG E+V QI+TF ++ A+  +RDVGRAL +PY+  D + K IP +  
Sbjct: 405  ERRQEVIDYVVRKYGKEKVVQIVTFQTMAARNVIRDVGRALDLPYALCDSVAKTIPMEIG 464

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +   A+      +E    +  V +L+++++KLEGL R+   HAAG+VIG   + + VP
Sbjct: 465  MNID-TALKVSKELKEMYEGNADVKQLIDMARKLEGLPRNTGMHAAGVVIGRDSIDEYVP 523

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603
            + R    D  +TQF M  IE+ GL+K DFLGL+TLT++Q ++ F+ Q  GV +D+  I +
Sbjct: 524  LARG-GDDSIITQFTMTTIERLGLLKMDFLGLRTLTVIQDAVKFIKQETGVDIDIDHIDY 582

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD + + L+T+  T GIFQLESSGM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y N
Sbjct: 583  DDKKVFELITSGKTEGIFQLESSGMKSFMKELKPQSLEDVIAGISLYRPGPMDFIPNYIN 642

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             K   EKI    P +  +L+ T G I+YQEQVMQI   L+GY+L  +D++RRAM KK  +
Sbjct: 643  GKEHPEKITYDVPELQEILEPTYGCIVYQEQVMQIVMKLAGYTLGRSDLVRRAMSKKKAD 702

Query: 724  EMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
             M K+++ F+ G  +         GI +  A  IF+ +  FA Y FNKSHAAAYAV++YQ
Sbjct: 703  VMAKERQYFVYGNEELGVPGCIARGIPEATANKIFDDMTDFAKYAFNKSHAAAYAVVAYQ 762

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K +YPVEF+AA M+   DN  K+  + Q  RQ  I+I+PP +N     F      I
Sbjct: 763  TAFLKCYYPVEFMAALMSSVKDNSSKVAGYIQSCRQMGIRILPPDINEGYSGFSAAKGAI 822

Query: 836  YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y ++ IK VG+     I+E   A+ P+  ++DF  R+  K+ N++ +E+L+  GA D F
Sbjct: 823  RYGMSGIKSVGSAVVDRIVEEREANGPYKDMKDFLVRMTPKETNKKTVEALILGGAFDSF 882

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE--NSSVRF 952
            G  R Q++ +   +        KN +    +      G F++    +   VE  +   + 
Sbjct: 883  GVKRRQMMMAYPMMIDEVYKERKNLSAGQMSFAEFFGGEFAEAAKTKFPDVEEYDEQEKL 942

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMG-------IKGYEESVATIRGNNIR-LAAMVVSK 1004
              E+ VLG Y SGHPL  Y+ ++ +         +   EE  A ++  +I  L  MV   
Sbjct: 943  ALEKSVLGIYISGHPLLDYEKLMSEKTAFSSVDFMIDEEEGRARVQDQSICILGGMVADV 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              K T+    + +VT  +   + E   FP
Sbjct: 1003 TVKMTKNNQNMAFVTLEDMVGQTEIIVFP 1031


>gi|312129891|ref|YP_003997231.1| DNA polymerase iii, alpha subunit [Leadbetterella byssophila DSM
            17132]
 gi|311906437|gb|ADQ16878.1| DNA polymerase III, alpha subunit [Leadbetterella byssophila DSM
            17132]
          Length = 1198

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 364/1070 (34%), Positives = 581/1070 (54%), Gaps = 82/1070 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL  H+ YSLL+GA S+  +  K   D+ PA+AITD  N+F   +F   A   G++PI
Sbjct: 3    FSHLHNHTQYSLLDGASSIKKLFAKAQQDEMPAVAITDHGNMFGVFDFVATAGKYGVKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+  +   D+    +  K         +LL   AEGY+ L +L S  Y+     +  R
Sbjct: 63   VGCEFYV--VDDHTRKSFTKDQKDVRYHQLLLAKNAEGYKNLTKLCSLGYMEGLYSKYPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I  + +++   +GLI  T      + +       + AE+    +   FG+  YV +QRH 
Sbjct: 121  ITKALIEKY-KDGLIATTCCIGALVPKTILKKGEEEAEQEFRWWLDRFGEDYYVEIQRHD 179

Query: 191  GYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              ++ R ++V+ + A  + + ++A+N+S ++ + D+ AHD+L+ +     +S       +
Sbjct: 180  MAEQIRVNEVLLKFAKKYNVKVIASNDSHYVDQSDWVAHDILLCINTGEKLSTPSNKEFS 239

Query: 250  PD----------------HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
             D                 Y K  +EM  +FSD+PEA++NT EI  +   +      +LP
Sbjct: 240  DDAEGSTKGTRFAFYNDQFYFKTTAEMTQLFSDIPEAIDNTNEIVGKVDHLNLKKDILLP 299

Query: 294  RF-----IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             F      +   DD   + E  LR+    G   R        G  + +  +RL+FEL+ I
Sbjct: 300  NFPIPQEFKVHADDTLNQWEY-LRHLTFEGARKRY-------GTVSPEAEERLNFELHTI 351

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
              M F+GYFLIV DFI+  ++  + +GPGRGS AGS  AY + IT+IDP++++LLFERFL
Sbjct: 352  KTMGFAGYFLIVMDFIKAGRELGVMIGPGRGSAAGSAVAYCIGITNIDPIKYNLLFERFL 411

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NPDR SMPD D DF  + R  VI YV +KYG  +VAQIIT+G++  K++++DV R + +P
Sbjct: 412  NPDRKSMPDIDTDFDDEGRQRVIDYVVDKYGKNQVAQIITYGTMATKSSVKDVARVMDLP 471

Query: 469  YSQVDRLCKLIPNDPAHPVSLQA---------------------IADDSRFREARLADPS 507
             ++ + + KLIP+ P + ++ Q                      I +  + R+       
Sbjct: 472  LAEANHIAKLIPDKPGYGMNFQKLIHAPISGPKSLTEIGLNPDEIENVKQIRDMYEGKDL 531

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
              ++L+ ++KLEG  R+   HAAGI+I    LS++VP+     SDL +TQF  K IE AG
Sbjct: 532  TAKVLKQAEKLEGTVRNTGIHAAGIIIAPYDLSEIVPVSVAKDSDLLITQFEGKVIEDAG 591

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            +IK DFLGL+ LT+++++L  + +  GV++D+  IP DD ETY L     T  IFQ ES 
Sbjct: 592  VIKMDFLGLRNLTIIKEALRMIKENYGVEIDIDNIPLDDEETYRLFQRGETNAIFQFESD 651

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            GM++ ++ +QPD  +D+IA+ +LYRPGPI  I  Y NRK+G+E I    P ++  L ET 
Sbjct: 652  GMKKYMKELQPDRFDDLIAMNALYRPGPIGYIPNYINRKHGREPITYDLPEMEEHLAETY 711

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+ +YQEQVM ++Q L+ ++  +AD LR+AMGKK KE +DK K +F+ G +KNG  + + 
Sbjct: 712  GITVYQEQVMLLSQKLANFTKGDADTLRKAMGKKQKEVLDKMKAKFMEGGAKNGHPEKVL 771

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              ++     FA Y FNKSH+  YA ++YQTA++KTHY  E++A  +T ++ N+EKI  F 
Sbjct: 772  DKVWTDWEAFAQYAFNKSHSTCYAFVAYQTAYLKTHYTAEYMAGVLTSQLGNIEKITFFM 831

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDS 864
            ++ +   +Q++ P +N     F V   + I + L  IKG G      I+E    +  F  
Sbjct: 832  EECKALGLQVLGPDINESQKRFSVNKKHEIRFGLGGIKGTGDAAVDAIIEEREKNGQFKD 891

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL--------QSLDNIQKYAQWVE 916
            + DF +RV+ + +N++ LESL +AGA DCF      +           ++ + +YA  V+
Sbjct: 892  IFDFITRVNLRTVNKKTLESLAYAGAFDCFEEIHRAIYFHVSEEGGTFIERLIRYANKVQ 951

Query: 917  KNRTNKHENIFAHEKGTFS---DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY-- 971
            +++ +    +F    G  +    K  +EK     +  +   E+ V+GFY SGHPLD +  
Sbjct: 952  EDKMSTQNTLFGTLGGDTAFNIQKPKIEKVEEWGNIEKLRYEKEVVGFYISGHPLDQFAM 1011

Query: 972  -----KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
                 +P+   +  K  ++   TI G       +V S   ++++ G++ G
Sbjct: 1012 EMSLCRPLDNTLLEKENKDKEFTIGG-------VVTSANIRQSKNGNQFG 1054


>gi|221632747|ref|YP_002521969.1| DNA polymerase III subunit alpha [Thermomicrobium roseum DSM 5159]
 gi|221155959|gb|ACM05086.1| DNA polymerase III alpha subunit [Thermomicrobium roseum DSM 5159]
          Length = 1166

 Score =  624 bits (1609), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 384/1053 (36%), Positives = 581/1053 (55%), Gaps = 59/1053 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            + HL +H+ +SLL+G   +   + +        +AI+D   L+  +++ +   A G+ PI
Sbjct: 5    YAHLHLHTEFSLLDGLGRIPEYVGRARELGMEHLAISDHGVLYGIIDWYKAVRAEGLHPI 64

Query: 71   IGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IG +  +    +QD  K          T+  ++LL     GY+ L++L +R  L +    
Sbjct: 65   IGMEAYLAPRSVQDRDK----------TIYHLLLLAENERGYKNLLKLATRASL-EGFYY 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              RI ++ L E   EGLI  +    GPI       + + A +  +  ++LFG DR Y+ L
Sbjct: 114  KPRIDMAMLAE-HAEGLIATSACLGGPIANNLLNGNHEAAREWGIRLRELFGPDRFYIEL 172

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++ R  S++V LA   +LPLV TN+  +L +ED    D+L+ +  ++ +    R
Sbjct: 173  QDHGLPEQRRVNSELVALARELDLPLVVTNDVHYLRQEDASVQDLLICIQTNSTLDDPKR 232

Query: 246  PRVTPDH-YLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQ---VHAPILPRFIEKEC 300
             RV  D  Y K+  EM  +F +++PEAL NTV IA RC   L+   +H P          
Sbjct: 233  MRVQSDQLYFKSAEEMWRLFGAEVPEALLNTVRIAERCEVELEFGRLHLPDPGIPAGMTA 292

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            DD        L      G+  R  +         ++ R+RL++EL+VI +  FS Y LIV
Sbjct: 293  DDY-------LAALCWEGIRQRYPE-------LTEEVRRRLEYELDVIRQTGFSSYMLIV 338

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DF ++A++  I  G  RGS A S+  YAL ITD+DPL   L+FERFLNP+R  MPD D+
Sbjct: 339  RDFAEFARQRGILYGV-RGSAAASIVLYALGITDVDPLANRLVFERFLNPERREMPDIDM 397

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  DRR EVI YV  KYG E VAQIITFG++ AKAA+RDVGRA+  P+++VDR+ +LIP
Sbjct: 398  DFADDRRHEVIEYVARKYGAEHVAQIITFGTMGAKAAIRDVGRAMGWPHAEVDRIARLIP 457

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +     +  +A+ +    R     DP    L++ ++KLEG+ RHA THAAG+VI   PL 
Sbjct: 458  SGVNMTLE-RALEESPELRHLYETDPRSRELIDNARKLEGIARHAGTHAAGVVISASPLV 516

Query: 541  QLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596
            + VP+ R  R++   LP TQF M+ + + GL+K DFLGL  LT+L  +++ + + RG  +
Sbjct: 517  EHVPLQRPARAEEGALPTTQFPMETVAEIGLLKMDFLGLANLTILANAVELIRETRGETI 576

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL  IP DD +T+ LL    T G+FQLES+GMR+ +  ++P  + ++ A+++LYRPGP+ 
Sbjct: 577  DLKQIPMDDRKTFELLAEGQTFGVFQLESAGMRRYIRELRPTSVAELAAMIALYRPGPMQ 636

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +I  Y   K+G E I   HP +  +L ET GVI+YQ+QV+ IA+  +GY+L EAD++R+A
Sbjct: 637  HIPRYCRAKHGLEPIQYPHPDLAEILDETYGVIVYQDQVLLIARKFAGYTLGEADIMRKA 696

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKKI E+M  ++ERFI+GA   G S+  A  IF L+  FA Y FNK+HA  YAV+SYQT
Sbjct: 697  MGKKIPEKMRAERERFIAGAIAKGYSEEDAERIFNLIEPFAGYAFNKAHATCYAVVSYQT 756

Query: 777  AWMKTHYPVEFLAASM----TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-- 830
            A++K +YPVE++ A +    +     V++I     + ++  I ++PP +N     F V  
Sbjct: 757  AYLKANYPVEYMTAILRNAPSHPSGTVKRIAAALAECQKLGISVLPPDINHSEATFTVEQ 816

Query: 831  ---GDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSKKLNRRVLES 884
               G   I + LA +K VG      I+ A  ++P   F S E FC  +D   +NRR +ES
Sbjct: 817  LPDGSRAIRFGLAMVKHVGEAAVEAILAARNEQPGKVFRSFEHFCETIDWSVVNRRAVES 876

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+  GALDCFG  ++ L Q    IQ      +  R  +  ++F+      +  +   +  
Sbjct: 877  LIKCGALDCFGDRKILLAQLDQAIQAAQARQKALRRGQM-DLFSAVGHDQAAPLRFSRPD 935

Query: 945  VENSSVRFEN----EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
            +E   +        E+ +LG Y S HPLD +  + R  G+    E      G  + L A+
Sbjct: 936  IEPPDIPTRTLLGWERELLGVYLSAHPLDEFVLLGRLRGLVQIAELDDESVGQTVELLAL 995

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +   ++  TR G  +  +   + +   EA  FP
Sbjct: 996  ISGVRKLTTRTGRVMAVLQLEDRSGTIEAVVFP 1028


>gi|78188863|ref|YP_379201.1| DNA polymerase III, alpha subunit [Chlorobium chlorochromatii CaD3]
 gi|78171062|gb|ABB28158.1| DNA polymerase III, alpha subunit [Chlorobium chlorochromatii CaD3]
          Length = 1189

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 371/1014 (36%), Positives = 560/1014 (55%), Gaps = 67/1014 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL  H+ YS+    +  + +     A   P IA+TD   +F+  E   +A   GI+ I
Sbjct: 3    FIHLHTHTHYSMQSSPIFPSELFKAAKAFGMPTIAVTDYGAMFNMPELFSEAKQVGIRLI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--LDQGKQS 128
            IG ++ +   D  + +          PS+VLLV    GY+ L  L+SR        G   
Sbjct: 63   IGSEVLLLEHDEHQTSRH-----TVSPSLVLLVKNETGYRNLCILLSRASREGFVNGMPH 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            V    S L E   +GL+ L+   +G I RA    S   A      ++++FG   Y+ LQR
Sbjct: 118  VE---SRLLEQYHDGLLCLSAYGAGRIGRALMAGSLDEAANFSAYYQEIFGSNFYLELQR 174

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +D     Q++ LA    + LVATNN  +L + D   +  L+A      +S      
Sbjct: 175  HNTSFDALLNEQIIGLAQKFSIELVATNNVHYLRQNDAGCYRALVANRTKEKLSGPVSAA 234

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +   +HYLK+  EM  +FS+    LENT+ IA +C+F      P LPRF      D   +
Sbjct: 235  LPGSEHYLKSAEEMQQLFSNEYGELENTLRIAEQCTFTFSDKEPALPRF---PLPDGFSD 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E + LR+    G   + A+    +G   ++ ++R++ EL VI +M FS YFLIV+D I  
Sbjct: 292  EASYLRHLTWEGAAEKYAKSE-EEGISQEEVKERIELELGVIEKMGFSSYFLIVSDLIAA 350

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++    VGPGRGS AGS+ AY   IT +DPLR+ LLFERFLNP+R+SMPD DIDF    
Sbjct: 351  SRRMGYSVGPGRGSAAGSIVAYLTGITRVDPLRYKLLFERFLNPERLSMPDIDIDFTPVG 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            + +V+ Y   KYG + VA++I  G+L AKAA+RD GR L++P   VD+L KL+P  P   
Sbjct: 411  KQKVLEYTVEKYGADSVAKVIAIGTLGAKAAIRDAGRVLEVPLPLVDKLAKLVPTKPG-- 468

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L+    DSR  RE   + P +  L++ ++ +EG  R+ S HA  +VI D  L + VP+
Sbjct: 469  ITLEKALTDSRDLREMAESTPELKTLMQYARSMEGRARNVSMHAGAVVITDGALEEQVPL 528

Query: 546  Y-------------RDVRSDLP----------------VTQFNMKWIEKAGLIKFDFLGL 576
            Y              ++  D P                VTQF+  WIE AGL+K D+LGL
Sbjct: 529  YVSNKIETEERRFADELDLDQPDNGKAKAGESNDEKQVVTQFDKNWIETAGLLKIDYLGL 588

Query: 577  KTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            +TL ++ ++L  + +R G+ +DL  +P  D +T+ +       GIFQ ESSGM+  +  +
Sbjct: 589  ETLAVIDETLRMIKRRHGLDIDLEKVPMTDRKTFRIFQEGKMAGIFQFESSGMQSYMTRL 648

Query: 636  QPDCIEDIIALVSLYRPGPIDNIV--------VYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            QP  I DIIA+ +LYRPG ++  V        ++ +RK+G+E I  +HP+++ +LKET G
Sbjct: 649  QPTQIGDIIAMSALYRPGALNARVDEHRNAVDLFVDRKHGREAIDYMHPMLEGILKETYG 708

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            VI+YQEQVMQI+Q++ G+S+++AD LR+AMGKK  E M+K K  FI+G    G+  T+A 
Sbjct: 709  VIVYQEQVMQISQVMGGFSMAKADNLRKAMGKKKPEIMEKFKADFIAGGVAQGVHDTLAT 768

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             +F+L+++FA YGFNKSH+AAY V++Y T ++K HY +EF+ A +  E+ + E++K    
Sbjct: 769  RVFDLMSEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFVTAVLNSEIGDTERMKHLTD 828

Query: 808  DARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            +A+ F I  +PPS+N     F V     G + I   L+AIK VG   AR I+ +   +  
Sbjct: 829  EAKSFGIATLPPSINKSDALFSVENSSNGRSAIRVGLSAIKQVG-GAARAIVTSRMRRKR 887

Query: 863  DSLE--DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            D L   D  + VD + +NR+ LE L+ AGA D F   R +LL ++D   K+ Q   +  T
Sbjct: 888  DFLNIFDLTASVDLRVMNRKALECLILAGACDDFDPHRARLLANIDKAIKFGQMQNRTVT 947

Query: 921  NKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
                  F++E+G   D     L+   +     +  +E++++GFY S HPL  Y+
Sbjct: 948  MGQCGFFSNEEGQEGDIHYPELDNADMMPDGEKLLHEKKLVGFYLSRHPLSAYR 1001


>gi|325263157|ref|ZP_08129892.1| DNA polymerase III, alpha subunit [Clostridium sp. D5]
 gi|324031550|gb|EGB92830.1| DNA polymerase III, alpha subunit [Clostridium sp. D5]
          Length = 1157

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 379/1069 (35%), Positives = 593/1069 (55%), Gaps = 86/1069 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F ++A   GI+PI
Sbjct: 3    FAHLHVHTEYSLLDGSNKIREYVARVKELGMNSAAITDHGVMYGVVDFYREAKKQGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +    N +   +          +VLL     GY  L+++VS+ ++ +      R
Sbjct: 63   LGCEVYV--APNSRFDREISGGDDRYYHLVLLAENNIGYANLMKIVSKGFV-EGYYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
            +  + L+E   EG+I L+   +G + R       + A+K  L ++ +FG    ++ LQ H
Sbjct: 120  VDKALLEEY-HEGIIALSACLAGEVQRYLTKGLYEEAKKSALEYQDIFGKGNYFLELQDH 178

Query: 190  RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++   +Q ++Q++   ++ LVATN+  +   ED + HD+L+ +  +  ++ ++R R 
Sbjct: 179  GIPEQTLVNQKLLQMSEELDIELVATNDVHYTLAEDEKPHDILLCIQTAKKLADENRMRY 238

Query: 249  TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +Y+K+  EM  +F    +ALENT  IA RC   ++     LP++            
Sbjct: 239  EGGQYYVKSPEEMAHLFPYALQALENTQRIANRCEVEIEFGVLKLPKY------------ 286

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE--------------------LNV 347
                                +  G  A +Y  +L FE                    LN 
Sbjct: 287  -------------------DVPDGLTAWEYLNKLCFEGLEKHYENPSEELRERLEYELNT 327

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I  M +  YFLIV DFI++AK N I VGPGRGS AGS+ +Y L ITDIDP+R+ LLFERF
Sbjct: 328  IKNMGYVDYFLIVWDFIKYAKDNGIAVGPGRGSAAGSIVSYCLEITDIDPIRYQLLFERF 387

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPD D+DFC +RR EVI YV  KYG +RV QI+TFG+L A+  +RDVGRA+ +
Sbjct: 388  LNPERVSMPDIDVDFCYERRQEVIDYVVRKYGKDRVVQIVTFGTLAARGVIRDVGRAMDL 447

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
            PY+ VD + K+IP +    +  +A+  +   R+    D  V  L+++S++LEGL RH+S 
Sbjct: 448  PYAFVDTIAKMIPTELNITID-KALKMNPELRKTYETDEQVKYLIDMSKRLEGLPRHSSM 506

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HAAG+VI  + + + VP+ R     +  TQF M  +E+ GL+K DFLGL+TLT++Q ++ 
Sbjct: 507  HAAGVVISQKSVDEYVPLSRAQDGSI-TTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVR 565

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
             +  +   +D+  I ++D +    + T  T GIFQLES+GM+  ++ ++P  +EDIIA +
Sbjct: 566  LVKHKNPGLDMDQIDYNDKDVLDYIGTGKTDGIFQLESAGMKSFMKELKPHSLEDIIAGI 625

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            SLYRPGP+D I  Y   KN    I    P ++P+L  T G I+YQEQVMQI + L+GY+L
Sbjct: 626  SLYRPGPMDFIPQYIRGKNDAGSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTL 685

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN--------IFELLAKFADY 759
              +D+LRRAM KK  + M K+++ F+ G  +NG+   +A          I++ +  FA Y
Sbjct: 686  GRSDLLRRAMSKKKGDVMQKERQIFVHGDEENGVPGCVANGIDEKTANKIYDEMIDFAKY 745

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSHAAAYAV+SYQTA++K +YPVEF+AA MT  ++N  K+ ++    RQ +I+I+PP
Sbjct: 746  AFNKSHAAAYAVVSYQTAYLKYYYPVEFMAALMTSVIENPPKVAEYIYTCRQMDIKILPP 805

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK-KL 877
             +N    DF V +  I Y LAAIK VG      I+    +  PF +LEDF SR+  K  L
Sbjct: 806  DINRGVADFSVDEGNIRYGLAAIKSVGKPVIEAIVSDRNEFGPFKNLEDFISRMSVKDSL 865

Query: 878  NRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            N+RV+E+ + AGALD    +R Q +    Q ++++ +  ++    + +  + +   +K  
Sbjct: 866  NKRVIENFIKAGALDGLDGTRKQFMSIYVQIVEHVNQEKKYAMTGQMSLFDLVDDEQKSE 925

Query: 934  FSDKI-TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEES 986
            F  K+  + +++ EN  + FE E  VLG Y SGHPL+  +   RK         +  EE+
Sbjct: 926  FEIKLPDVGEYTKEN-LLAFEKE--VLGIYISGHPLEEDEEKWRKSISATTADFQPDEET 982

Query: 987  VATIRGNNIR--LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              T   +  +  +  M+  K  K TR    + ++T  +     E   FP
Sbjct: 983  GTTKVHDGAKEIIGGMITDKTVKNTRNNQMMAFLTLEDLLGTVEVVVFP 1031


>gi|111223805|ref|YP_714599.1| DNA polymerase III subunit alpha [Frankia alni ACN14a]
 gi|111151337|emb|CAJ63049.1| DNA polymerase III alpha subunit [Frankia alni ACN14a]
          Length = 1177

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 380/1077 (35%), Positives = 592/1077 (54%), Gaps = 73/1077 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL VH+ YS+L+GA  L ++  +++  Q PA+AITD   ++ A +F ++A AAG+
Sbjct: 2    SNSFVHLHVHTEYSMLDGAARLKDMFSEVSRQQMPAVAITDHGYMYGAYDFHKQATAAGV 61

Query: 68   QPIIGCQLDIDMQDNL-KMTNQGKTPF---------PTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIGC+  +  +  L K   +   P           +   + +    A+G + L  L S
Sbjct: 62   KPIIGCEAYVAPESRLLKQRVRWGEPHQKSDDVSGGGSYTHMTMWARNADGLKNLFRLNS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            R  +     +  R+    + E   +GL+  TG  SG +           A +   T++++
Sbjct: 122  RASIEGHYIKWPRMDQEIIAE-HADGLMATTGCPSGIVQTRLRLGQYDAALQAAATYQEI 180

Query: 178  FG-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            FG +  +  +  H G D  R     +V +A   ++  V TN+S +  E + +AH  L+ V
Sbjct: 181  FGKENFFCEIMDH-GLDIERRVRDGLVDIARALDMRFVVTNDSHYTYEHERDAHAALLCV 239

Query: 235  AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRC--SFILQVHAP 290
              ++ V+          ++LK+  EM  I S     E  E T+ IA R   + +   H  
Sbjct: 240  QTASTVANPSFQFEGSGYFLKSAEEMYGIDSSDIWQEGCETTLLIAERVDPTGMFAKHN- 298

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            ++PRF   + +     EE+  R +  AG++ R  QG         ++R+R+++E+ VI +
Sbjct: 299  LMPRFPVPDGE----TEESWFRAETWAGMDRRFPQG------FDDEHRERVEYEIRVILQ 348

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F  YFL+VADFI WAK   IPVGPGRGS AGS+ A+AL ITD+DP+  SLLFERFLNP
Sbjct: 349  MGFPSYFLVVADFIMWAKAQGIPVGPGRGSAAGSMVAFALGITDLDPIPHSLLFERFLNP 408

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPD DIDF + RR +VIRYV  ++G +R+AQI+TFG+++AKAA++D  R L  PY+
Sbjct: 409  ERVSMPDIDIDFDERRRGDVIRYVTERWGDDRIAQIVTFGTIKAKAAIKDSSRVLGYPYA 468

Query: 471  QVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
              DR+ K +P              DP HP   +A       R    +D  V +++E ++ 
Sbjct: 469  VGDRITKAMPPAVMGKDIPLGGIFDPKHPRFSEA----GEIRGLYESDADVKKVIETAKG 524

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R A  HAAG+++   P+   +P++R       +TQF+    E  GL+K DFLGL+
Sbjct: 525  LEGLIRQAGVHAAGVIMSAEPIIDHIPVWRRDADGAIITQFDYPTCETLGLLKMDFLGLR 584

Query: 578  TLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT++  ++ +  A RG+ +DL  +  DD   Y LL    TLG+FQL+   MR  L  M+
Sbjct: 585  NLTVMDDAVRNVEANRGITIDLLGLTLDDPAAYELLGRGDTLGVFQLDGGPMRSLLRMMR 644

Query: 637  PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVII 690
            PD  EDI A+++LYRPGP+  ++ + Y  RKNG+++I  IHP +   L +    T G+I+
Sbjct: 645  PDNFEDISAVLALYRPGPMGANSHINYALRKNGQQEITPIHPELSEALADILDTTYGLIV 704

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVM IAQ ++GYSL  AD+LRRAMGKK KE +DK+   F  G   +G S+     ++
Sbjct: 705  YQEQVMAIAQKVAGYSLGGADLLRRAMGKKKKEILDKEFVPFSEGMKNSGYSEAAIKTLW 764

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            ++L  F+DY FNK+H A Y ++SY TA++K +YP E++AA +T   D+ +K   +  + R
Sbjct: 765  DILVPFSDYAFNKAHTAGYGLVSYWTAYLKANYPAEYMAALLTSVRDDKDKSAIYLNECR 824

Query: 811  QFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDF 868
            +  I+++PP VN+   D+   G   I   LAAI+ VGT     I+     K  F S  DF
Sbjct: 825  RMGIRVLPPDVNSSNADYTAHGAAEIRVGLAAIRNVGTNVVESIVRTRKSKSRFVSFPDF 884

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHE 924
              +VD+   N+R +ESL+ AGA D  G++R  L+    Q++D +    +   + + +   
Sbjct: 885  LDKVDAVVCNKRTIESLIKAGAFDALGHTRRGLVERHEQAVDAVMGVKKKNAEGQFDLFA 944

Query: 925  NIFAHEKGTFSDKITLEKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
                 + G  +    +++FS +  + +V+  +E+ +LG Y S HPL   + IL       
Sbjct: 945  LDADDDPGA-APVFGVQEFSDQEWDKAVKLSHEREMLGLYVSDHPLREVEHILTARA--- 1000

Query: 983  YEESVATIR------GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + S+A +       G+ + +A ++ S Q+K T++G      T  + A   E  FFP
Sbjct: 1001 -DCSIAALTGGEYADGSTVTIAGIISSLQRKVTKQGKLWALTTVEDLAGGLEVMFFP 1056


>gi|284991667|ref|YP_003410221.1| DNA polymerase III subunit alpha [Geodermatophilus obscurus DSM
            43160]
 gi|284064912|gb|ADB75850.1| DNA polymerase III, alpha subunit [Geodermatophilus obscurus DSM
            43160]
          Length = 1185

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 392/1089 (35%), Positives = 585/1089 (53%), Gaps = 94/1089 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL VH+ YS+L+GA  L  +    A    PA+A+TD  N+F A +F ++A AAG+
Sbjct: 6    SDSFVHLHVHTEYSMLDGAAKLPEVTKAAAEQGMPALAMTDHGNVFGAYDFYKQAKAAGV 65

Query: 68   QPIIGCQ-----------LDIDMQDNL------KMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            +PIIG +              D  +NL        +++GK  +     + LL  T EG  
Sbjct: 66   KPIIGMEGYYTPGSRFDRAPFDFGENLIDEDGEGGSSRGKAAYT---HMTLLARTTEGMH 122

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L   +S M  L+   +  R     L+  GT GLI  TG  SG ++          A + 
Sbjct: 123  NLFR-ISSMASLEGQYRKPRFDRDLLERYGT-GLIATTGCPSGEVNMWLRAGKHDRARQA 180

Query: 171  LLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
               F+ +FG +  Y  +  H    ++     ++++A    +PL+ TN+  +   ED EAH
Sbjct: 181  AADFQDIFGKENFYAEVMDHGLAIEKKTRPALLEIAKELGIPLLGTNDLHYTHREDAEAH 240

Query: 229  DVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            D L+ +   + +++ +R +   D +YLK+ +EM ++FS+LPEA +NT+ +A +C      
Sbjct: 241  DALLCIQTGSRLNETNRFKFNGDGYYLKSAAEMRALFSELPEACDNTLLVAEQCEVEFTE 300

Query: 288  HAPILPRFI----EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
             A ++PRF     E E     KE E  L  +   G+   +              R++ D+
Sbjct: 301  GADLMPRFPLPPGEDETSWFIKEVERGLHKRWPGGIPDHV--------------RKQADY 346

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            E+ +I +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DPL   L+
Sbjct: 347  EVGIITQMGFPGYFLVVADFINWAKDNGIRVGPGRGSAAGSLAAYAMGITDLDPLAHGLI 406

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R+SMPD DIDF   RR EVI+YV  KYG ERV+QI+T+G+++AKAA++D  R
Sbjct: 407  FERFLNPERVSMPDVDIDFDDRRRGEVIQYVSQKYGEERVSQIVTYGTIKAKAAIKDAAR 466

Query: 464  ALQMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDR 510
             L  PYS  D L KL+P              DPAHP   +A    + FR    +DP    
Sbjct: 467  VLDRPYSVGDELTKLMPPDVMGKGIPLSGVFDPAHPRYKEA----AEFRARYESDPGAAE 522

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            +++ ++KLEGL R    HAAG++IG  PL   +P+ R       +TQF+    E  GL+K
Sbjct: 523  VVDQARKLEGLKRQWGVHAAGVIIGRYPLIDSIPIMRREADGAVITQFDYPTCETLGLLK 582

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFD--DHETYHLLTTKGTLGIFQLESSG 627
             DFLGL+ LT++  +L  +   G + +DL  I  D  D  TY LL+   TLG+FQ +   
Sbjct: 583  MDFLGLRNLTVIDDALRNIVANGKEPIDLDEISKDLTDPATYALLSRGDTLGVFQFDGGP 642

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM--- 681
            MR  L  M+PD  EDI A+ +LYRPGP+  ++   Y  RKNG+++I  IHP L +P+   
Sbjct: 643  MRSLLRLMRPDNFEDISAVGALYRPGPMGANSHTNYALRKNGQQEITPIHPELAEPLEDI 702

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L  T G+I+YQEQVM IAQ ++GYSL +AD+LRRAMGKK K  +D +   F +G  + G 
Sbjct: 703  LGTTYGLIVYQEQVMAIAQKVAGYSLGKADLLRRAMGKKKKSVLDAEFVGFEAGMKERGF 762

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            S      ++++L  FADY FNK+H+AAY ++SY TA++K +YP E++A  +T   D+ ++
Sbjct: 763  SDAAIKTLWDILVPFADYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDR 822

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK- 860
               +  + R+  I+++PP VN    DF      I + LA+++ VG      I  A  +K 
Sbjct: 823  RPIYLAECRRMGIKVLPPDVNESSWDFTAVGTDIRFGLASVRNVGHNVVDSIRRAREEKG 882

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             F    DF  ++D+   N++V+ESL  AGA D  G+SR  ++         A  +++   
Sbjct: 883  AFKDFADFMRKIDTVACNKKVIESLAKAGAFDSLGHSRQGIVAVHAQAVDSAMALKRREA 942

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVE----------NSSVRFENEQRVLGFYFSGHPLDV 970
                ++F    G+F D+   + FS            + S R   E+ +LG Y S HPL  
Sbjct: 943  EGQFDLF----GSFGDEGADDPFSGALDIAIPTADWSKSERLVFERDMLGLYVSDHPLHG 998

Query: 971  YKPILRKMGIKGYEESVATIR------GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             + +L        +  +A I       G N+ +A ++ S   +  ++G+     T  +  
Sbjct: 999  VEHVL----AANADTPIAEINAGGVEDGANVTIAGILTSVAPRTNKQGAPWAIATLEDLE 1054

Query: 1025 KEYEANFFP 1033
               E  FFP
Sbjct: 1055 SGIEVLFFP 1063


>gi|138896305|ref|YP_001126758.1| DNA polymerase III subunit alpha [Geobacillus thermodenitrificans
            NG80-2]
 gi|134267818|gb|ABO68013.1| DNA polymerase III alpha subunit [Geobacillus thermodenitrificans
            NG80-2]
          Length = 1095

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 377/1029 (36%), Positives = 584/1029 (56%), Gaps = 55/1029 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL V S YSL +   ++  ++ K       A+A+TD   L+ A+ F ++    G++P
Sbjct: 4    TFVHLHVLSGYSLFQSTATVEALVAKAKQLGYRALALTDHQVLYGAIPFYRECQRHGLRP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG   D+ +  +          FP    +VLL +  EGY+ LIE+ + +    Q ++  
Sbjct: 64   IIGMMADVVLDGD-------SGAFP----LVLLAANEEGYRHLIEISTAV----QMREEK 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR--LLTFKKLFGDRLYVNLQ 187
             +  + L+ + + G+I +T G +G ++   F  + +VA+ +  LL +++LF  RLY+ +Q
Sbjct: 109  HVHEAALRRL-SGGIIAITPGLNGRVES--FLAAGEVAQAKETLLRYRQLFAGRLYIAIQ 165

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R        ES +++LA    +P+VATN   ++  ED  A   L A+     ++      
Sbjct: 166  RGERTRAPYESALLRLAEETGVPVVATNEVRYVEREDALAWRCLQAIGDGVPLAHIPE-- 223

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YL    EM   F+DLPEALEN++ IA +C   ++     LP+F   + +      
Sbjct: 224  -EDERYLAALDEMARRFADLPEALENSMNIANQCELHIEFGHWRLPKFPVPDGET----A 278

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            ++ LR         RL +  +A+   + D  YR+RL+ EL++I  M+FS YFLIVAD + 
Sbjct: 279  DSYLR---------RLCEQGLARRVPSADARYRERLEHELHIIQTMRFSDYFLIVADVLA 329

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A++  I  GPGRGS AGS+ AYAL+ITD+DP+ + LLFERFLNP+R+S+PD D+DF  D
Sbjct: 330  YARQRGILTGPGRGSAAGSLVAYALSITDVDPIEYGLLFERFLNPERVSVPDIDLDFPDD 389

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVIRYV   YG + VAQIITFG+  AKAALR+  + L +   + +R+  L+PN    
Sbjct: 390  RREEVIRYVVETYGRDHVAQIITFGTFGAKAALRETAKVLGVSGREAERVMALLPNKQGV 449

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +S Q   + + FR A  A P  +R L I++KLEGL RH S HAAG++I   PL + VP+
Sbjct: 450  TIS-QWHRESAAFRRALRALPDGERWLTIAKKLEGLPRHTSIHAAGVIISPDPLMRHVPL 508

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604
             +    + P+TQ+ M  +E  GL+K DFLGL+TLTLL + +  +  Q G   D+  +P D
Sbjct: 509  -QPSHGEWPLTQYAMGALEALGLLKIDFLGLRTLTLLGQMVRLIERQTGKPFDVRALPLD 567

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY LL+   T G+FQLESSGM++ L  ++P  +E+I+A+ +LYRPGP++ I  Y  R
Sbjct: 568  DEKTYALLSAGDTSGVFQLESSGMKRVLAELRPATLEEIVAVNALYRPGPMNMIPTYIRR 627

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K G+E I  +HP ++P+L  T GV+IYQEQ+MQIA  ++G+SL +ADVLRRA+ KK K  
Sbjct: 628  KRGEEAISYLHPDLEPILAPTYGVLIYQEQIMQIAARIAGFSLGKADVLRRAVAKKEKAL 687

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + + +E F++G   NG    +A  ++  + +FADYGFN+SHA +Y ++SY  A++K HYP
Sbjct: 688  LAEHREAFVAGCVANGYPAPMAEELYRQIVRFADYGFNRSHAVSYTLLSYALAYIKAHYP 747

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            + F A  ++    + EK+  +  +A +  I ++PPSVN     F V    I   LA +K 
Sbjct: 748  LCFYAVMLSNASGDREKMVLYSYEAARKGIALLPPSVNRSGYRFAVEGEAIRAGLATVKH 807

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG+     I E   + PF    DF  R+  K L R  LE+L+ AGA D  G  R  LL S
Sbjct: 808  VGSAAKLIIDERKENGPFADFFDFAVRLLPKGLARSALEALISAGAFDELGEERGSLLAS 867

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            ++   ++ Q +              E G  S K         + + R + E+ +LGF  +
Sbjct: 868  IEIAIEHVQLMRPYL----------EAGGLSLKPKYADAPPLSPAERRQREKELLGFAVT 917

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP  V +P+ + +         A + G+ + +   +   ++ +T+ G  + ++T S+ +
Sbjct: 918  PHPAAVCRPLFQAV----RAVPAAEVHGSPVVVGGCIAELRKTRTKFGEEMAFITVSDES 973

Query: 1025 KEYEANFFP 1033
             E EA  FP
Sbjct: 974  GELEAVAFP 982


>gi|229820885|ref|YP_002882411.1| DNA polymerase III, alpha subunit [Beutenbergia cavernae DSM 12333]
 gi|229566798|gb|ACQ80649.1| DNA polymerase III, alpha subunit [Beutenbergia cavernae DSM 12333]
          Length = 1190

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 400/1084 (36%), Positives = 594/1084 (54%), Gaps = 87/1084 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YS+L+GA  + +++ ++ A  Q A+AITD   LF A +F ++A AAGI+PI
Sbjct: 10   FVHLHVHTDYSMLDGAARVPDLVAEVKAQGQSAVAITDHGYLFGAYDFWKRARAAGIKPI 69

Query: 71   IGCQLDID----MQDNLKM-------TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IG +  +      QD  ++                    + L+  T  G   L  + S +
Sbjct: 70   IGLEAYVTPGTARQDRSRVRWGERDQVGDDVAGGGAYTHLTLVSETTAGMHNLFRMGS-L 128

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
              L+      RI    +    ++GLI  +G  SG I           A +     + +FG
Sbjct: 129  ASLEGYYFKPRIDRELMTRY-SDGLIAFSGCPSGEIQTRLRLGQWDEAVRAAAELQDIFG 187

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  Y+ L  H    ++    Q+++LA     PLVATN+  ++ +ED  AH++L+ V  +
Sbjct: 188  KDSFYIELMDHSLELEKRVAKQLMELAAHLGAPLVATNDLHYVRDEDEHAHELLLCVQSN 247

Query: 238  TVVSQK------DRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCS--FILQV- 287
            +++S        +R  ++ D +Y+++ +EM  +F++LPEA +NT+ IA RC   F  QV 
Sbjct: 248  SLMSDPTYEQGGNRFALSGDGYYVRSSAEMRRLFAELPEACDNTLAIAERCEVEFTEQVG 307

Query: 288  ----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                H P+ P   E E     KE E         GL  R  +      +  +D  Q+  +
Sbjct: 308  RYMPHFPVPPG--EDEISLFVKEVER--------GLVSRFGE------HVPEDVAQQAKY 351

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            E+ VI    ++GY+L+VADFI WAK+N+I VGPGRGSGAGS+ AYA+ IT++DPL   L+
Sbjct: 352  EIEVITSKGYAGYYLVVADFINWAKRNSIRVGPGRGSGAGSMAAYAMGITELDPLSNGLI 411

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+RMS+PDFDIDF + RR EVIRYV  KYG E VA I+T+G+++AK +L+D GR
Sbjct: 412  FERFLNPERMSLPDFDIDFDERRRGEVIRYVTQKYGEENVASIVTYGTIKAKQSLKDSGR 471

Query: 464  ALQMPYSQVDRLCKLIPNDPA---HPVSLQAIAD--DSRFREAR------LADPSVDRLL 512
             L  P++  ++L K +P  PA     VSL  I D  D R+ EA         DP   ++ 
Sbjct: 472  VLGYPFAMGEKLTKAMP--PALMGKDVSLSGIFDPEDKRYAEAAEFRTLYETDPDARKVT 529

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            + ++ +EGL R    HAAGI+I   PL  ++P+ R       +TQ +    E  GL+K D
Sbjct: 530  DAAKGIEGLKRQWGVHAAGIIISSEPLIDVIPIMRRDSDGAIITQIDFPAGEDLGLVKMD 589

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            FLGL+ LT+L+ +L  +   G K D+ +  +P DD  TY LL    TLG+FQL+ SGMRQ
Sbjct: 590  FLGLRNLTILEDALVNIGING-KPDVVIEDVPLDDAATYELLGRAETLGVFQLDGSGMRQ 648

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKE 684
             L  M+PD  EDI A+ +LYRPGP+  ++   Y  RKNG + IV IHP L  P+   L  
Sbjct: 649  LLRLMRPDNFEDISAVGALYRPGPMGANSHTNYALRKNGLQDIVPIHPELAGPLEEVLGP 708

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+I+YQEQVM IAQ L+GY+L EAD+LRRAMGKK KE +DK+   F +G  + G S+ 
Sbjct: 709  TYGLIVYQEQVMAIAQHLAGYTLGEADLLRRAMGKKKKEILDKEYVPFSNGMKERGYSEG 768

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
                ++++L  F+DY FNK+H+AAY +ISY TA++K +Y VE++AA +T   D+ +K   
Sbjct: 769  AIKALWDVLVPFSDYAFNKAHSAAYGLISYWTAYLKVNYRVEYMAALLTSTRDDKDKSAL 828

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFD 863
            +  + R   I ++PP VN    +F      I + LAA++ VG      I +A  +K  F 
Sbjct: 829  YLNECRHLGITVLPPDVNDSAANFTPVGEDIRFGLAAVRNVGANVVEAIAKAREEKGAFT 888

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            S  DF  +V +   N+R +ESLV AGA D  G++R  LL   +        V++      
Sbjct: 889  SFTDFLDKVPAVVCNKRTIESLVKAGAFDALGHTRRSLLLVHEQAVDAVIGVKRKEAEGQ 948

Query: 924  ENIFAHEKGTFSDKI-TLEKFSVE-------NSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
             ++FA   G   D   ++  F+VE       +   +   E+++LG Y S HPL   + +L
Sbjct: 949  FDLFASLGGPADDAAGSVASFAVEIPDLPEWDKKQKLSFERQMLGLYVSDHPLAGVEHVL 1008

Query: 976  RKMGIKGYEESVATI-------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                    + SVAT+        G+ + +A ++ S Q K +++G+    V   +     E
Sbjct: 1009 TAAA----DVSVATLLADEARPDGSTVTIAGLITSLQVKVSKQGNPWAAVVIEDLEGSIE 1064

Query: 1029 ANFF 1032
              FF
Sbjct: 1065 VMFF 1068


>gi|269120359|ref|YP_003308536.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386]
 gi|268614237|gb|ACZ08605.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC
           33386]
          Length = 1122

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 366/979 (37%), Positives = 571/979 (58%), Gaps = 52/979 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL++H+ YSLLEG   +   LD+        +A+TDT  +F  +EF +KA   GI+PI
Sbjct: 6   FVHLKLHTEYSLLEGVGKIEEYLDRAKKLDIKQLAVTDTA-MFGVVEFYEKAFKKGIKPI 64

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY-LLDQGKQSV 129
           IG ++ +D        ++G+       S+ LL     GY+ L +L S  +   ++ +  +
Sbjct: 65  IGLEIFMD-----GFFSEGEY------SLTLLARNQTGYKNLCKLSSLSFSRFNRSRNKI 113

Query: 130 RICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
           R      +E+   +EGL +L+GG +  +  +         +  +    + FG+  YV + 
Sbjct: 114 R-----YEELKKHSEGLFILSGGINSELTESILTYKYSEFKNIITKLVQDFGEYFYVEVP 168

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
              R  D+ +    +++A       VA N+  + +  D     +++++   T ++ ++  
Sbjct: 169 AAERLKDKVK--LYIEMAEECNAEYVAANDVYYPNFGDSILQKIMISIKDGTKINSENTE 226

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D YLK+  +M   FS   +A+EN+++IAR C+   +      P +   E     K 
Sbjct: 227 LKYNDLYLKSAEQMKENFSGYEKAIENSLKIARECNVSFEFDKFKFPEYNLPEG----KS 282

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
           E   +R     GL+ +  +         +   +R ++EL++I +M ++GYF+IV DFI++
Sbjct: 283 ETEYIRELVYDGLKKKYGEPL------EEKITERAEYELDIINKMGYNGYFIIVWDFIKY 336

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           AK N I VGPGRGS AGS+ +YAL IT++DP++++L+FERFLNP+R+SMPD DIDF Q++
Sbjct: 337 AKDNGIYVGPGRGSSAGSIVSYALNITEVDPIKYNLIFERFLNPERISMPDIDIDFDQEQ 396

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R++VI YV  KYGHE+VA IITFG+L+A+AA+RDVGR L +   +VD++ KLIP    H 
Sbjct: 397 REQVIDYVVKKYGHEKVAHIITFGTLKARAAIRDVGRVLDINLKKVDKVAKLIP----HF 452

Query: 487 VSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             L+ A+ +    +    +D  V  +++ S KLEG  RHAS HAAG+VI    L   +P 
Sbjct: 453 SELEDAVKNVRELKTLYNSDSEVRDMIDYSLKLEGKVRHASVHAAGMVISKDVLDDEIPT 512

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604
           Y D R+    TQ+ MK +E  G++K DFLGLK LT+L+K+++ +   +G  + L  IP D
Sbjct: 513 YSDGRASFLSTQYQMKELEDLGILKMDFLGLKNLTILRKTMENIKITQGKVMVLDDIPLD 572

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
           D ETY +LT   TLG+FQ ES G+R+ ++ M+ +  EDI+AL++LYRPGP+ + +V  + 
Sbjct: 573 DKETYKMLTAGDTLGVFQCESIGIRRLMQKMKIEKFEDIVALLALYRPGPLRSGMVDDFI 632

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             KN    I   H  +  +L ET GVI+YQEQV++I  +L+ Y++ E D LRRAMGKKI 
Sbjct: 633 ASKNEGAAIKYPHEALIDVLSETYGVILYQEQVLKIVNVLANYTMGEGDSLRRAMGKKIP 692

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
           E M + +E FI  A +N I+   A  IF L+ KF+ YGF KSH+ AYA+++Y TA++KT+
Sbjct: 693 ELMAQNREVFIKRAVENNITPDKAEEIFNLIDKFSGYGFPKSHSVAYALVAYWTAYLKTN 752

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
           Y  EF AA+M+ EM N++++  F  +AR   ++++ P VN    +F    + I + L AI
Sbjct: 753 YFKEFFAATMSTEMYNIDRLSLFINEARDKGVKVLLPDVNLSAYEFLAEKDGIRFGLLAI 812

Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
           K VG    + ++E   ++ FDS EDF   +  + LN++ LE+ VF+G+LD    +R ++ 
Sbjct: 813 KHVGINIVKKVIEVRKNEKFDSYEDFVYNLKKEGLNKKQLEAFVFSGSLDKIHNNRKEMF 872

Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS-----SVRFENEQR 957
            S+D +    +W EK + N  E++     G  S KI L  FS+E S     S+  E E+ 
Sbjct: 873 SSIDRV---LEWCEK-KFNSEEDLQMILFGGKSQKIGL--FSMEKSEEYSESLLLEKEKE 926

Query: 958 VLGFYFSGHPLDVYKPILR 976
            LG Y S HPLD YK ++R
Sbjct: 927 FLGVYLSKHPLDNYKLLMR 945


>gi|50955139|ref|YP_062427.1| DNA polymerase III subunit alpha [Leifsonia xyli subsp. xyli str.
            CTCB07]
 gi|50951621|gb|AAT89322.1| DNA polymerase III, alpha subunit [Leifsonia xyli subsp. xyli str.
            CTCB07]
          Length = 1171

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 391/1064 (36%), Positives = 585/1064 (54%), Gaps = 57/1064 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YS+L+GA  +  ++D       PA+A+TD  N+F A +F + A  AGI+P
Sbjct: 4    SFVHLHVHSEYSMLDGAARVKPLIDAAVEQGMPAVAVTDHGNMFGAFDFWRTAIDAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFP-----------TVPSIVLLVSTAEGYQRLIELVSR 118
            IIG +    +      T++ +  +                + LL +T EG   L  + S 
Sbjct: 64   IIGTE--AYLTPGTHRTDKTRIRWGDGGGDDVSGSGAYTHMTLLAATTEGMHNLFRM-SS 120

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
            +  ++      R+    L +   +G+I  TG  SG +         + A+K    F+ +F
Sbjct: 121  LASIEGYYFKPRMDRELLSQY-AKGIIATTGCPSGEVQTRLRLGQYEEAKKAAAEFRDIF 179

Query: 179  G-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            G +  Y  +  H  G +R   S +++LA    LPLVATN+  +    D ++H  L+ V  
Sbjct: 180  GKENFYAEIMDHGLGIERRIMSDLIRLAKELGLPLVATNDLHYTHAADAKSHAALLCVQS 239

Query: 237  STVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
             + +   +R +   D  YLK   +M  +F D P+A +NT+ IA R        A  +PRF
Sbjct: 240  GSTLDDPNRFKFDADEFYLKTSEQMRQLFRDHPDACDNTLTIAERVDVRFDTAANYMPRF 299

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                 +     E+     +   GL  R + G         + R++ D+E+ VI++M F G
Sbjct: 300  PVPAGE----TEQTWFVKEVERGLAERYSNGVTP------EVRKQADYEIGVISQMGFPG 349

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+VADFI W+K N I VGPGRGSGAGS+ AYA+ ITD+DPLR  L+FERFLNPDR+SM
Sbjct: 350  YFLVVADFINWSKDNGIRVGPGRGSGAGSMAAYAMRITDLDPLRHGLIFERFLNPDRVSM 409

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFD+DF   RR EVI+YV +KYG ERVAQI+T+G+++AK AL+D  R L  P+   ++L
Sbjct: 410  PDFDVDFDDRRRGEVIKYVTDKYGEERVAQIVTYGTIKAKQALKDSSRVLGFPFGMGEKL 469

Query: 476  CKLIPNDP-AHPVSLQAIADDS--RFREAR------LADPSVDRLLEISQKLEGLYRHAS 526
             K +P       + L  I D    R++EA        +DP    + + +  LE L R   
Sbjct: 470  TKAMPPPVMGKDIPLTGIFDKQHPRYKEALDIRAVVESDPEAKTVFDTALGLENLKRQWG 529

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HAAG+++   PL  ++P+ +  +    VTQF+    E  GLIK DFLGL+ LT++  +L
Sbjct: 530  VHAAGVIMSSDPLIDVIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIINDAL 589

Query: 587  DFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            D + A RG K+ L  +  DD   Y LL+   TLG+FQL+   MR  L  M+PD  EDI A
Sbjct: 590  DNIEANRGEKLVLENLELDDRAAYELLSRGDTLGVFQLDGGPMRSLLRLMKPDNFEDISA 649

Query: 646  LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQVMQIA 699
            L++LYRPGP+  ++   Y  RKNG+++I  IHP L  P+   L  + G+IIYQEQVM IA
Sbjct: 650  LIALYRPGPMGANSHTNYALRKNGQQEITPIHPELAQPLQDILSTSYGLIIYQEQVMAIA 709

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q ++G+SL +AD+LRRAMGKK K E+DKQ E F  G  +NG S      ++E+L  F+DY
Sbjct: 710  QKVAGFSLGQADILRRAMGKKKKSELDKQFEGFSQGMVENGYSVAAVNKLWEILLPFSDY 769

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNK+H+AAY VISY TA++K HYP E++AA +T   D+ +K+  +  + R+  I+++PP
Sbjct: 770  AFNKAHSAAYGVISYWTAYLKAHYPAEYMAALLTSVGDSKDKMALYLNECRRMGIEVLPP 829

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLN 878
             VN   + F      I + + A++ VG      + EA  +   F+S  DF SRV     N
Sbjct: 830  DVNESSLYFAAVGEDIRFGMGAVRNVGANVVEGVREARESSGRFESFHDFLSRVPVHAAN 889

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN-----KHENIFAHEKGT 933
            +R +ESL+ AGA D  GY+R  L++  ++  + A  ++++  N       ++++  ++  
Sbjct: 890  KRTVESLIKAGAFDSLGYTRRALVEVHEDAVESAVKIKRSEANGDVGFDFDSLWGDDEPN 949

Query: 934  FSDKITLEKFS-VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TI 990
             S     E+   V+   + FE E  +LG Y S HPL   +  L K+      + VA  T+
Sbjct: 950  RSQHHIPERPEWVKRDKLAFERE--MLGLYVSDHPLAGLELHLAKLASTSIADLVASETV 1007

Query: 991  R-GNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANFF 1032
            + G  + +A +V S Q +  +  G++ G +   +   E  A F 
Sbjct: 1008 QDGETVVIAGLVTSVQHRVAKASGNQYGMIQVEDFGGEMTAMFM 1051


>gi|254824367|ref|ZP_05229368.1| DNA polymerase III [Listeria monocytogenes FSL J1-194]
 gi|293593601|gb|EFG01362.1| DNA polymerase III [Listeria monocytogenes FSL J1-194]
          Length = 1108

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 373/1032 (36%), Positives = 591/1032 (57%), Gaps = 49/1032 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + + +Q  L   N  +        ++L+  +  GY  L+++ S +   ++G +   
Sbjct: 63   IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE--- 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   +  LI ++ G+ G I+R     + + A +      ++FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P   
Sbjct: 169  ---NPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+ Y  ++ EM   +    E  A   T E+A RC   + +   +LPRF   E  +     
Sbjct: 226  PN-YFTSQEEMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNEGQNAS--- 281

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR  A AGL+ R   GA        +Y++RL++EL VI  M F+ YFLIV D I+++
Sbjct: 282  -DVLRQTAFAGLKERNLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRYS 332

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RR
Sbjct: 333  REAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     +
Sbjct: 393  DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450

Query: 488  SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +LQ A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 451  TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F+V  ++ I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962
            +D + +Y   + ++  +K  N+FA E   F  K+          S+  + E E+   G Y
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             S HP+  Y+  L+ + I      +A +  G N ++AA V   +  +T+KG  + ++T S
Sbjct: 927  VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982

Query: 1022 EPAKEYEANFFP 1033
            + +KE  A  FP
Sbjct: 983  DDSKELSAVMFP 994


>gi|227494658|ref|ZP_03924974.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
 gi|226831840|gb|EEH64223.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
          Length = 1176

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 371/1074 (34%), Positives = 588/1074 (54%), Gaps = 76/1074 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YS+L+GA  +  ++ + A  +QPA+AITD   LF A EF  +A  AGI+PI
Sbjct: 7    FVHLHNHTEYSMLDGASKIAPMVKEAARLEQPALAITDHGYLFGAYEFYSEARKAGIKPI 66

Query: 71   IGCQLDI----------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            IG +  +                + Q +  ++ +G         + LL  T EG   L  
Sbjct: 67   IGLEAYVTPGTSRFDRTRVRWGEEWQASDDVSARG-----AYTHLTLLAETTEGMHNLFR 121

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S   L  Q  +  R  +  L++  ++GLI  TG  S  +           A +     
Sbjct: 122  LGSMASLDGQWGKWPRADMELLEQY-SKGLIAFTGCPSSEVQTRMRLGQWDKAVEAAGRL 180

Query: 175  KKLFG-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            + +FG + ++V    H G D  +   + +++L+    +P+V TN++ +++ +D +  D L
Sbjct: 181  QDVFGKENVFVEFMDH-GIDIEKRTRADLIKLSNQLNIPMVVTNDAHYVTADDRDIQDAL 239

Query: 232  MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +     +   DR +     +Y+++   M   + D+P+A +NT+ IA RC+        
Sbjct: 240  LCINSGVTLDTPDRFKFDGSGYYIRSSESMRRDWEDIPQACDNTLLIAERCNVEFTEGVS 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             +PRF   E +D    E +    +   GL +R  QG         + R++ D+E+ +I +
Sbjct: 300  YMPRFPVPEGED----ETSWFIKEVERGLHIRFPQGI------PDNVRKQADYEVGIINQ 349

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            MKF GYFL+V+DFI+WAKK  I VGPGRGSGAGS+ AYA+ ITD++PL   LLFERFLNP
Sbjct: 350  MKFPGYFLVVSDFIRWAKKQGIRVGPGRGSGAGSMVAYAMQITDLNPLDHGLLFERFLNP 409

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFD+DF + RR EVI YV  KYG +RVAQ++T+G ++AK AL+D  R L  PY+
Sbjct: 410  ERVSMPDFDVDFDERRRGEVIEYVTRKYGDDRVAQVVTYGKIKAKQALKDSCRVLGRPYA 469

Query: 471  QVDRLCKLIPNDP-AHPVSLQAIADD--------SRFREARLADPSVDRLLEISQKLEGL 521
              ++L K +P       + +  I D         + FR     +P    ++++++ LEGL
Sbjct: 470  LGEQLTKAMPPSVMGKDIPVSGIFDKEHKRYEEAAEFRRYYNENPETHPIVDMAKGLEGL 529

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HA  +++   PL Q++P+ +  +    +TQF+    E  GL+K DFLGL+ LT+
Sbjct: 530  TRQWGVHACAVIMSSVPLQQVIPLMQRPQDGATITQFDYPTCESLGLLKMDFLGLRNLTV 589

Query: 582  LQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +LD + + G  + D+  +  +D +TY LL+   TLG+FQL+  GM++ L+ M PD  
Sbjct: 590  ISDALDNIERNGKERPDIDHVELNDPKTYQLLSAGETLGVFQLDGDGMQKLLKRMAPDNF 649

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQ 694
            EDI A+ +LYRPGP+  D+   Y +RKNG+ +I  IHP +   LKE    T G+I+YQEQ
Sbjct: 650  EDISAVGALYRPGPMGADSHNKYADRKNGRAEIEPIHPELAEPLKEILGTTYGLIVYQEQ 709

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VM IAQ ++GYSL +AD+LRRAMGKK KE +DK+   F +G  + G S+     ++E+L 
Sbjct: 710  VMAIAQKVAGYSLGQADLLRRAMGKKKKEILDKEYVPFHAGMIERGYSEDCIKTLWEILV 769

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F++Y FNKSH+AAY ++SY TAW+K +YPVE++A+ +T + DN +K+  +  + R+  I
Sbjct: 770  PFSNYAFNKSHSAAYGLVSYMTAWLKANYPVEYMASLLTSQKDNKDKLALYLSECRRMGI 829

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873
             ++PP VN    +F    N I + LAAI+ VG      I+EA  +K  +DS   F  +V 
Sbjct: 830  TVLPPDVNVSEANFTAVGNDIRFGLAAIRNVGINVVEGIVEARKEKGKYDSFASFLDKVP 889

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
                N+R +ESL+ +GA D     R  L+   +   + A  +++N      ++F    G 
Sbjct: 890  VAVCNKRTIESLIKSGAFDSVADCRRALVAVHEEAVESAVKLKRNEAAGQFDLF----GA 945

Query: 934  FSDKITLEKFSVENSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
              D   ++  +V+  ++       +  +E+ +LG Y S HPL   +  L +      +E 
Sbjct: 946  MFDSAEVQMMTVDVPNMPDWPKHEKLSHERDMLGLYVSDHPLSGIQKALERY----QDEQ 1001

Query: 987  VATIRGNN-------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +A I  +        +++A ++ +   K TRKG      T  + +   +  FFP
Sbjct: 1002 IAQILTSETSRDRQMVKVAGLITAVTIKTTRKGELWAIATLEDLSGSIDLLFFP 1055


>gi|325108084|ref|YP_004269152.1| DNA polymerase III subunit alpha [Planctomyces brasiliensis DSM 5305]
 gi|324968352|gb|ADY59130.1| DNA polymerase III, alpha subunit [Planctomyces brasiliensis DSM
            5305]
          Length = 1172

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 375/1025 (36%), Positives = 569/1025 (55%), Gaps = 39/1025 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  F HL  HS YSLL+GA  +  +++K       ++AITD  NLF ALEF +K    GI
Sbjct: 9    SQPFAHLHCHSHYSLLDGANRIPAMIEKCKTHGMNSLAITDHGNLFGALEFYEKCRGGGI 68

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
             PIIG +  I      K T++  +        + LL +   G++ L+++ S+ YL  +G 
Sbjct: 69   NPIIGYEAYIAPG---KRTDRSASRMKEASFHLTLLATNQVGFKNLVKMASKAYL--EGF 123

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                     L E   EG+I L+G +S  +      +  + AE+ L  ++K FGDRLY+ +
Sbjct: 124  YYKPRIDKDLLEAHNEGIICLSGCASSELSHLLLTDQQEQAEQLLRWYEKTFGDRLYLEI 183

Query: 187  QRHRGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            Q   G    ++   + ++LA     PLVATN++ +L++ D  AHD+L+ V   + V+  +
Sbjct: 184  Q-DSGVQIQKDCMERTIELADRFGFPLVATNDAHYLNQGDAPAHDILLCVNTRSTVNDAN 242

Query: 245  RPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R ++   + +L+   EM + F   P+A+  + EIA RC   L +     P F        
Sbjct: 243  RMQLDGCEFHLRTPEEMYNAFPHCPDAVARSQEIADRCDIELDLTTRHFPVFDPPP---- 298

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             K +   LR+    GL+ R            Q Y  RLD EL VI +M +S YFLIV DF
Sbjct: 299  GKTDVQYLRDLCEEGLKWRYGDQP------DQVYYDRLDKELGVIEKMGYSSYFLIVWDF 352

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             ++A+   IP    RGS  G++ AY L ++D+ P+++ LLFERFL+P R   PD DIDFC
Sbjct: 353  ARFARDKGIPC-TARGSACGAIVAYLLGLSDVCPIQYDLLFERFLDPSRSEAPDIDIDFC 411

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            +DRR  VI +V+ KYG   VAQI TFG+L+AK ALRDV RAL +P ++V+ + K+IP D 
Sbjct: 412  RDRRQWVIDFVKEKYGEASVAQIGTFGTLKAKNALRDVARALDVPLARVNEVAKMIP-DT 470

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             +     A+      +E    D  +  +++ +  LEGL R+  THAAG+VIGD+PL + V
Sbjct: 471  LNIKLKDAVDSTPELKEQYDQDRQIREVIDFAMALEGLARNVGTHAAGVVIGDQPLDEYV 530

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI-- 601
            P+ R       +TQ+    +EKAGL+K DFLGL+ L++L K++  + +     ++  I  
Sbjct: 531  PLQRITGKTDIITQWTD--VEKAGLLKMDFLGLRNLSILDKAVKNVRENNPDFNMRPIDF 588

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IV 659
            P DD ET+ LL    T GIFQLES GMR  L  M+PD   DIIA  +LYRPGP++   ++
Sbjct: 589  PLDDKETFALLQRGETKGIFQLESGGMRDLLTKMKPDKFADIIATSALYRPGPLEGGMVM 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y   K+G++ + ++HP++D +L ET GV++YQEQVM+I   + G  LS A    +A+ K
Sbjct: 649  TYVEVKHGRQPVPTVHPIVDEVLAETYGVMVYQEQVMRILNRVGGIELSSAYRCIKAISK 708

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  E +    E F+ G+ KN + K +A  ++EL+ KFA YGFNKSH+ AY  I+YQTA++
Sbjct: 709  KKLEMIAAFHEEFLEGSQKNDMDKKVAQELWELIEKFAGYGFNKSHSTAYGAIAYQTAYL 768

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYP EF+AA ++  M++ E+I +   D R+  I I+PP +NT  VDF+V    I + +
Sbjct: 769  KAHYPKEFMAALLSCGMESSERIAEHIDDCRRMKITILPPDINTSEVDFRVAGENIAFGM 828

Query: 840  AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKGVG +  + ++ E  A+ P+ S+ D C RVD K + +  LE+L+ AGALD FG +R
Sbjct: 829  GAIKGVGESAVQAVVDEREANGPYKSIFDLCERVDPKAMTKGNLETLIKAGALDSFGPNR 888

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE-------NSSVR 951
             Q   +++   + A    K++     ++F    G      T+E+ +           S +
Sbjct: 889  EQHTLAVEMAVQMAARKHKDKLRGQRSLFGGGGGGDE---TVEELAATVPEAPDWTHSQK 945

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               E+ V GFY + HPL  +   +  +     +E         + L  M+ + ++  T+ 
Sbjct: 946  LNIEKEVFGFYLTSHPLTEFADQITPLCSHTTKELAEAEDQIEVILGGMISAIKKATTKN 1005

Query: 1012 GSRIG 1016
             SR G
Sbjct: 1006 PSRNG 1010


>gi|196249927|ref|ZP_03148622.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
 gi|196210441|gb|EDY05205.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
          Length = 1093

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 377/1029 (36%), Positives = 583/1029 (56%), Gaps = 55/1029 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL V S YSL +   ++  ++ K       A+A+TD   L+ A+ F ++    G++P
Sbjct: 2    TFVHLHVLSGYSLFQSTATVEALVAKAKQLGYRALALTDHQVLYGAIPFYRECQRHGLRP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG   D+ +  +          FP    +VLL +  EGY+ LIE+ + +    Q ++  
Sbjct: 62   IIGMMADVVLDGD-------SGAFP----LVLLAANEEGYRHLIEISTAV----QMREEK 106

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR--LLTFKKLFGDRLYVNLQ 187
             +  + L+ + + G+I +T G +G ++   F  + +VA+ +  LL +++LF  RLY+ +Q
Sbjct: 107  HVHEAALRRL-SGGIIAITPGLNGRVES--FLAAGEVAQAKETLLRYRQLFAGRLYIAIQ 163

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R        ES +++LA    +P+VATN   ++  ED  A   L A+     ++      
Sbjct: 164  RGERTRAPYESALLRLAEETGVPVVATNEVRYVEREDALAWRCLQAIGDGVPLAHIPE-- 221

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YL    EM   F+DLPEALEN++ IA +C   ++     LP+F   + +      
Sbjct: 222  -EDERYLAALDEMARRFADLPEALENSMNIANQCELHIEFGHWRLPKFPVPDGET----A 276

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            ++ LR         RL +  +A+   + D  YR+RL+ EL++I  M+FS YFLIVAD + 
Sbjct: 277  DSYLR---------RLCEQGLARRVPSADARYRERLEHELHIIQTMRFSDYFLIVADVLA 327

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A++  I  GPGRGS AGS+ AYAL+ITD+DP+ + LLFERFLNP+R+S+PD D+DF  D
Sbjct: 328  YARQRGILTGPGRGSAAGSLVAYALSITDVDPIEYGLLFERFLNPERVSVPDIDLDFPDD 387

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVIRYV   YG + VAQIITFG+  AKAALR+  + L +   + +R+  L+PN    
Sbjct: 388  RREEVIRYVVETYGRDHVAQIITFGTFGAKAALRETAKVLGVSGREAERVMALLPNKQGV 447

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +S Q   + + FR A  A P  +R L I++KLEGL RH S HAAG++I   PL + VP+
Sbjct: 448  TIS-QWHRESAAFRRALRALPDGERWLTIAKKLEGLPRHTSIHAAGVIISPDPLMRHVPL 506

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604
             +    + P+TQ+ M  +E  GL+K DFLGL+TLTLL + +  +  Q G   D+  +P D
Sbjct: 507  -QPSHGEWPLTQYAMGALEALGLLKIDFLGLRTLTLLGQMVRLIERQTGKPFDVRALPLD 565

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY LL+   T G+FQLESSGM++ L  ++P  +E+I+A+ +LYRPGP++ I  Y  R
Sbjct: 566  DEKTYALLSAGDTSGVFQLESSGMKRVLAELRPATLEEIVAVNALYRPGPMNMIPTYIRR 625

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K G+E I  +HP ++P+L  T GV+IYQEQ+MQIA  ++G+SL +ADVLRRA+ KK K  
Sbjct: 626  KRGEEAISYLHPDLEPILAPTYGVLIYQEQIMQIAARIAGFSLGKADVLRRAVAKKEKAL 685

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + + +E F++G   NG    +A  ++  + +FADYGFN+SHA +Y ++SY  A++K HYP
Sbjct: 686  LAEHREAFVAGCVANGYPAPMAEELYRQIVRFADYGFNRSHAVSYTLLSYALAYIKAHYP 745

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            + F A  ++    + EK+  +  +A +  I ++PPSVN     F V    I   LA +K 
Sbjct: 746  LCFYAVMLSNASGDREKMVLYSYEAARKGIALLPPSVNRSGYRFAVEGEAIRAGLATVKH 805

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG+     I E   + PF    DF  R+  K L R  LE+L+ AGA D  G  R  LL S
Sbjct: 806  VGSAAKLIIDERKENGPFADFFDFAVRLLPKGLARSALEALISAGAFDELGEERGSLLAS 865

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            ++   ++ Q +              E G  S K         +   R + E+ +LGF  +
Sbjct: 866  IEIAIEHVQLMRPYL----------EAGGLSLKPKYADAPPLSPDERRQREKELLGFAVT 915

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP  V +P+ + +         A + G+ + +   +   ++ +T+ G  + ++T S+ +
Sbjct: 916  PHPAAVCRPLFQAV----RAVPAAEVHGSPVVVGGCIAELRKTRTKFGEEMAFITVSDES 971

Query: 1025 KEYEANFFP 1033
             E EA  FP
Sbjct: 972  GELEAVAFP 980


>gi|290894457|ref|ZP_06557416.1| DNA polymerase III [Listeria monocytogenes FSL J2-071]
 gi|290555995|gb|EFD89550.1| DNA polymerase III [Listeria monocytogenes FSL J2-071]
          Length = 1108

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 373/1032 (36%), Positives = 591/1032 (57%), Gaps = 49/1032 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + + +Q  L   N  +        ++L+  +  GY  L+++ S +   ++G +   
Sbjct: 63   IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE--- 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   +  LI ++ G+ G I+R     +   A +       +FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENRDGALEAYANLVDIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +    +++   +    +P+VAT N  +L  +D +A +VL A+  +  V     P   
Sbjct: 169  ---NPRLFAKIETFSAEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIF-SDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+ Y  ++ EM   + +D  + A   T E+A RC   + +   +LPRF  KE  +     
Sbjct: 226  PN-YFTSQEEMERDWQTDFEKRACLETGELAERCHVEIALDQHLLPRFPLKEGQN----A 280

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR  A  GL+ R   GA        +Y++RL++EL VI  M F+ YFLIV D I+++
Sbjct: 281  PDVLRQTAYDGLKERDLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRYS 332

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  +  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RR
Sbjct: 333  REAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     +
Sbjct: 393  DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450

Query: 488  SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +LQ A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 451  TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSKGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F+V  ++ I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962
            +D + +Y   + ++  +K  N+FA E   F  K+          S+  + E E+   G Y
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFA-EDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             S HP+  Y+  L+ + I      +A +  G N ++AA V   +  +T+KG  + ++T S
Sbjct: 927  VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982

Query: 1022 EPAKEYEANFFP 1033
            + +KE  A  FP
Sbjct: 983  DDSKELSAVMFP 994


>gi|256544919|ref|ZP_05472290.1| DNA polymerase III alpha subunit [Anaerococcus vaginalis ATCC 51170]
 gi|256399418|gb|EEU13024.1| DNA polymerase III alpha subunit [Anaerococcus vaginalis ATCC 51170]
          Length = 1149

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 370/1058 (34%), Positives = 585/1058 (55%), Gaps = 55/1058 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + +F HL +H+ YSLL+G   ++ +++K+      + AITD  N++  +EF +K  A  I
Sbjct: 2    TNNFTHLHLHTEYSLLDGFTKIDKLMEKLKEFGMDSCAITDHGNMYGVIEFYKKCQANNI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC++ I   D    T Q K  +     ++LL     GY+ L+++VS+ Y   QG  
Sbjct: 62   KPIIGCEVYICENDYKIKTPQNKRYY----HLILLAKNNNGYKNLLKIVSKAYT--QGYY 115

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
               RI    L+E   E LI L+   +G I++    N  + A      +  LFG +  Y+ 
Sbjct: 116  YKPRIDFEVLKEY-KEDLIGLSACLNGEINQRILENDIKKAYSTAKKYLDLFGKENFYLE 174

Query: 186  LQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H   ++ + ++V+ ++    ++ LV TN+  ++ + D    DVL  +   +++  ++
Sbjct: 175  VQYHGLKEQKKVNEVLLRIHKDLDIELVCTNDVHYVEKNDAFYQDVLSCIQTGSLLEDEN 234

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R ++  D  YLK+   M  IF + P A ENT +I+  C+  L+ H P LP F +   D  
Sbjct: 235  RMKMPVDEFYLKDSQMMEEIFKEFPRAFENTQKISAMCNVSLEFHNPHLPYFTKLPKDTT 294

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFLIVA 361
              E            L++ + +G I K Y   D +  +R   E++VI  M +  YFLIV 
Sbjct: 295  NLEY-----------LKILVKEGLIKK-YKNLDEKIIKRAKKEIDVINNMGYVDYFLIVW 342

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF+++AK N I VGPGRGS AGS+ +YAL IT IDPL++ LLFERFLNP+R+SMPD DID
Sbjct: 343  DFVKYAKDNKIAVGPGRGSAAGSIVSYALDITQIDPLKYDLLFERFLNPERVSMPDIDID 402

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RD+V+ YV   YG + V+QI+TFG +QA+ A+RDVGR + + Y++VD++ KLIP 
Sbjct: 403  FCYENRDKVVEYVYELYGRDHVSQIVTFGRMQARNAIRDVGRVMNISYNKVDKIAKLIPQ 462

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  +A+    +       D    R+++ ++ +E L RH S HAAG+VI    L+ 
Sbjct: 463  AIGMTID-KALDSTEKLAYEYQNDVETKRMIDTARNIEALPRHTSIHAAGVVISKEILTD 521

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSL 600
            +VP+   + +D  VTQFNM  IE+ GL+K DFLGL+ LT++Q ++ D    + +++DL  
Sbjct: 522  IVPLA--LSNDQIVTQFNMTEIEELGLLKMDFLGLRNLTVIQDTIKDIKKNKNIEIDLGA 579

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            I  +D +     T   T+GIFQ ES+GMR  L+ ++P   +D++A  SL+RPGP+D I  
Sbjct: 580  IDENDPKVISQFTKAETVGIFQFESAGMRNFLKNLKPTRFDDLVAANSLFRPGPMDQIPN 639

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y   K   + I  I   + P+L+ T G+I+YQEQVMQI Q L+G+SL EAD LRRAM KK
Sbjct: 640  YIKNKINPQNISYIDDALKPILEVTYGIIVYQEQVMQIVQKLAGFSLGEADNLRRAMSKK 699

Query: 721  IKEEMDKQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
                M+  +E F+ G               NGIS+  A  I++ +  FA Y FNKSH+AA
Sbjct: 700  KMSVMEANREIFVHGKKNQNGEYEVIGCVNNGISEINANKIYDEMISFAKYAFNKSHSAA 759

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y++++ QTA++K ++  E++A  +T  M N  K+  +  +A++  I+I+PP++N     F
Sbjct: 760  YSLVAIQTAFLKYYFKEEYMANLLTSIMGNSSKVYLYISEAKRLGIKIVPPNINKSKRRF 819

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESL 885
               +N I + L+AIK VG      I+    +K F S +DF  R+   D   LN++ LESL
Sbjct: 820  IASENEIVFGLSAIKNVGENLIDLIVNLRKEKNFKSFKDFLERIEANDPTVLNKKALESL 879

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKF 943
            + AG  DC GY R +L+   +   +     EK       N+  F   K    D I     
Sbjct: 880  IKAGVFDCMGYKRSELMAVHETALQSIHDNEKVNLKGQMNLLDFDQNKEEIIDDIKFPPV 939

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--------GNNI 995
            +   +  + + E+ VLGFY S HPL+     L+   +    E ++ +R          ++
Sbjct: 940  NEYKNKQKLKLEKEVLGFYISDHPLNSLGNNLKNY-VNFTTEILSELRPVDLDKFDNKSV 998

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            R+A ++ +K +  T+K + + + +  + +   +   FP
Sbjct: 999  RMAGIITNKSETMTKKSTLMAFCSLEDMSGSIDMIIFP 1036


>gi|254992099|ref|ZP_05274289.1| DNA polymerase III (alpha subunit) DnaE [Listeria monocytogenes FSL
            J2-064]
          Length = 1108

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 372/1032 (36%), Positives = 590/1032 (57%), Gaps = 49/1032 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + + +Q  L   N  +        ++L+  +  GY  L+++ S +   ++G +   
Sbjct: 63   IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE--- 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   +  LI ++ G+ G I+R     + + A +      ++FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P   
Sbjct: 169  ---NPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+ Y  ++ EM   +    E  A   T E+A RC   + +   +LPRF   E  +     
Sbjct: 226  PN-YFTSQEEMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNEGQNAS--- 281

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I+++
Sbjct: 282  -DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYS 332

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RR
Sbjct: 333  REAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     +
Sbjct: 393  DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450

Query: 488  SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +LQ A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 451  TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F+V  ++ I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962
            +D + +Y   + ++  +K  N+FA E   F  K+          S+  + E E+   G Y
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             S HP+  Y+  L+ + I      +A +  G N ++AA V   +  +T+KG  + ++T S
Sbjct: 927  VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982

Query: 1022 EPAKEYEANFFP 1033
            + +KE  A  FP
Sbjct: 983  DDSKELSAVMFP 994


>gi|254852197|ref|ZP_05241545.1| DNA polymerase III [Listeria monocytogenes FSL R2-503]
 gi|258605503|gb|EEW18111.1| DNA polymerase III [Listeria monocytogenes FSL R2-503]
          Length = 1108

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 371/1032 (35%), Positives = 591/1032 (57%), Gaps = 49/1032 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + + +Q  L   N  +        ++L+  +  GY  L+++ S +   ++G +   
Sbjct: 63   IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE--- 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   +  LI ++ G+ G I+R     + + A +      ++FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P   
Sbjct: 169  ---NPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+ Y  ++ +M   +    E  A   T E+A RC   + +   +LPRF   E  +     
Sbjct: 226  PN-YFTSQEDMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNEGQNAS--- 281

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I+++
Sbjct: 282  -DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYS 332

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I  GPGRGS AGS+ +YAL+ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RR
Sbjct: 333  REAGILTGPGRGSAAGSLVSYALSITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     +
Sbjct: 393  DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450

Query: 488  SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +LQ A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 451  TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F+V  ++ I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962
            +D + +Y   + ++  +K  N+FA E   F  K+          S+  + E E+   G Y
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             S HP+  Y+  L+ + I      +A +  G N ++AA V   +  +T+KG  + ++T S
Sbjct: 927  VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982

Query: 1022 EPAKEYEANFFP 1033
            + +KE  A  FP
Sbjct: 983  DDSKELSAVMFP 994


>gi|46907805|ref|YP_014194.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 4b
            F2365]
 gi|46881074|gb|AAT04371.1| DNA polymerase III, alpha subunit [Listeria monocytogenes serotype 4b
            str. F2365]
          Length = 1108

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 371/1032 (35%), Positives = 591/1032 (57%), Gaps = 49/1032 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + + +Q  L   N  +        ++L+  +  GY  L+++ S +   ++G +   
Sbjct: 63   IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE--- 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   +  LI ++ G+ G I+R     + + A +      ++FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P   
Sbjct: 169  ---NPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+ Y  ++ +M   +    E  A   T E+A RC   + ++  +LPRF   E  +     
Sbjct: 226  PN-YFTSQEDMERDWQTEFEKRACLETGELADRCHVEIALNQHLLPRFPLNEGQNAS--- 281

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I+++
Sbjct: 282  -DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYS 332

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RR
Sbjct: 333  REAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     +
Sbjct: 393  DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450

Query: 488  SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +LQ A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 451  TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F+V  ++ I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962
            +D + +Y   + ++  +K  N+FA E   F  K+          S+  + E E+   G Y
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             S HP+  Y+  L+ + I      +A +  G N ++AA V   +  +T+KG  + ++T S
Sbjct: 927  VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982

Query: 1022 EPAKEYEANFFP 1033
            + +KE  A  FP
Sbjct: 983  DDSKELSAVMFP 994


>gi|254931514|ref|ZP_05264873.1| DNA polymerase III [Listeria monocytogenes HPB2262]
 gi|293583067|gb|EFF95099.1| DNA polymerase III [Listeria monocytogenes HPB2262]
 gi|328474924|gb|EGF45724.1| DNA polymerase III, alpha subunit [Listeria monocytogenes 220]
          Length = 1108

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 371/1032 (35%), Positives = 590/1032 (57%), Gaps = 49/1032 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + + +Q  L   N  +        ++L+  +  GY  L+++ S +   ++G +   
Sbjct: 63   IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE--- 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   +  LI ++ G+ G I+R     + + A +      ++FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P   
Sbjct: 169  ---NPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+ Y  ++ EM   +    E  A   T E+A RC   + +   +LPRF   E  +     
Sbjct: 226  PN-YFTSQEEMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNEGQNAS--- 281

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I+++
Sbjct: 282  -DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYS 332

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I  GPGRGS AG++ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RR
Sbjct: 333  REAGILTGPGRGSAAGALVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     +
Sbjct: 393  DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450

Query: 488  SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +LQ A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 451  TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F+V  ++ I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962
            +D + +Y   + ++  +K  N+FA E   F  K+          S+  + E E+   G Y
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             S HP+  Y+  L+ + I      +A +  G N ++AA V   +  +T+KG  + ++T S
Sbjct: 927  VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982

Query: 1022 EPAKEYEANFFP 1033
            + +KE  A  FP
Sbjct: 983  DDSKELSAVMFP 994


>gi|117928262|ref|YP_872813.1| DNA polymerase III subunit alpha [Acidothermus cellulolyticus 11B]
 gi|117648725|gb|ABK52827.1| DNA polymerase III, alpha subunit [Acidothermus cellulolyticus 11B]
          Length = 1190

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 392/1075 (36%), Positives = 589/1075 (54%), Gaps = 81/1075 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA  + ++L +  A   PAIA+TD  N++ A +F ++A A GI P
Sbjct: 24   SFVHLHVHTEYSMLDGAARIKDLLAETVAMGAPAIAMTDHGNVYGAYDFYKQARACGINP 83

Query: 70   IIGCQLDID-------MQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            IIG +  +         + +L     G +        I LL    +G   L  L S +  
Sbjct: 84   IIGMEGYLAPGSRFDRRRVSLATAGPGDENAGEMYTHITLLAENTDGMHNLFRL-SSLAS 142

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180
            L+      R+    L     +G+I  TG  S  ++R         A +    ++ +FG +
Sbjct: 143  LEGFYYKPRMDRELLATY-AKGIIATTGCPSSEVNRLLQQGKYAAARQAAAEYRDIFGAE 201

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  L  H    +R     +++LA    LPL+ATN+  +   +D+EAH+VL+ V     
Sbjct: 202  NFYCELMDHGLEIERRVRDDLLRLARELRLPLLATNDLHYTYAQDWEAHEVLLCVQTGKT 261

Query: 240  VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++  +R +    + YLK  ++M  +F DLPEA +NT+ IA R        A ++PRF   
Sbjct: 262  LADPNRFKFDAKEFYLKTPAQMRELFRDLPEACDNTLAIAERVHVEFAEGANLMPRFPVP 321

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              +     EE+ L  +  AGL  R   G          YR+R ++EL VI +M F GYFL
Sbjct: 322  PGE----TEESWLVKEVEAGLHRRFPSGV------PDAYRERAEYELTVICQMGFPGYFL 371

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +VAD +++AK+N I VGPGRGS AGS+ AYAL IT++DP++  LLFERFLNP+R+SMPD 
Sbjct: 372  VVADLVRYAKENGIRVGPGRGSAAGSMVAYALGITELDPIKHKLLFERFLNPERVSMPDI 431

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDF + RR ++IRY   KY  + VAQIIT+G+++AK A++D  R L  PY+  DR+ KL
Sbjct: 432  DIDFDERRRGDMIRYATQKYREDHVAQIITYGTIKAKQAIKDSARVLGYPYAISDRITKL 491

Query: 479  IPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            +P              DP+HP   +A    + FR     DP V ++++ ++ LEGL R  
Sbjct: 492  MPPALMGRDLSLAAIFDPSHPRYAEA----AEFRAVYENDPDVRKIVDTARNLEGLKRQW 547

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
              HAAG+++   PL  ++P+ R  +    +TQF+M   E  GL+K DFLGL+ LT+L   
Sbjct: 548  GVHAAGVILSREPLLDVIPIQRREQDGAIITQFDMGACEALGLLKMDFLGLRNLTVLDDC 607

Query: 586  LDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            L  + A RG+ + L  +P DD  TY LL    TLG+FQL+   MR  L  M+PD  EDI 
Sbjct: 608  LAGIKANRGIDLVLEEVPLDDPATYELLQRGETLGVFQLDGGPMRALLRSMRPDNFEDIS 667

Query: 645  ALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQVMQI 698
            A+++LYRPGP+  +  + Y +RKNG++ +  IHP L +P+   L +T GVI+YQEQV+ I
Sbjct: 668  AVLALYRPGPMGANAHIEYADRKNGRKPVEPIHPELAEPLADILDDTYGVIVYQEQVIAI 727

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ ++GYSL +AD+LRRAMGKK KE +DK+   F  G  KNG S+     ++E+L  F+D
Sbjct: 728  AQRVAGYSLGQADLLRRAMGKKKKEILDKEYIPFSEGMRKNGYSEDAIRTLWEILVPFSD 787

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            Y FNK+H A Y ++SY TA++K +YP E++AA +T   D+ EK   +  + R+  I+++P
Sbjct: 788  YAFNKAHTAGYGLVSYWTAYLKANYPAEYMAALLTSVKDDKEKSALYLHECRRMGIRVLP 847

Query: 819  PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKL 877
            P VN    +F    + I + L+A++ VG      I+E    K  F    DF ++V+    
Sbjct: 848  PDVNESDTNFTPRGDDIRFGLSAVRNVGENVVASIIETRRSKGRFTDFFDFLAKVEPVVC 907

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-- 935
            N++V+ESL+ AGA D  G++R  LL        +A+ V+     K     AH  G F   
Sbjct: 908  NKKVVESLIKAGAFDSLGHTRRGLLAV------HAEVVDSVMETKR----AHAVGQFDLF 957

Query: 936  -------DKITLEKFSVENSS----VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                   + +++ +  + +      V    E+ +LG Y S HPL   + +L ++     +
Sbjct: 958  GSAADAPEAVSIVRRPISDEEWEKPVLLAAEREMLGLYVSDHPLLGVEHVLARL----VD 1013

Query: 985  ESVATIR------GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             S+A +       G  I +  +VVS  ++ TR+GS    VT  +     E   FP
Sbjct: 1014 CSIAALTDDERPDGAQITIGGIVVSLTRRVTRQGSPWAVVTLEDLDGSIEVLVFP 1068


>gi|119357011|ref|YP_911655.1| DNA polymerase III, alpha subunit [Chlorobium phaeobacteroides DSM
            266]
 gi|119354360|gb|ABL65231.1| DNA polymerase III, alpha subunit [Chlorobium phaeobacteroides DSM
            266]
          Length = 1190

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 378/1013 (37%), Positives = 565/1013 (55%), Gaps = 64/1013 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YS+    +    +    +     +IA+TD    F+  E   +A  AGI+ +
Sbjct: 3    FVHLHVHTHYSMQSSPVFPAELFSACSRFGMKSIAVTDYCAAFNMPELFAEAENAGIKLV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +L +     L+  +  +T     PS++LLV   EGY+ L  L+SR    D     + 
Sbjct: 63   IGTELYL-----LESASHHQTRHTVSPSLILLVQNDEGYRHLCILLSRA-AKDGFINGMP 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               S L E    GLI L+G SSG I +A    + + AE  +  +K +FGD  Y+ LQ HR
Sbjct: 117  HIESSLLEACHGGLIALSGYSSGRIGKALLSGAQEEAESFVRYYKSVFGDNFYLELQNHR 176

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQKDRPRV 248
              +D       + +A  + + LVATNN  +L  +D   +  ++A      + SQ  +   
Sbjct: 177  MPFDDELRKATIAIAEKYAVELVATNNVHYLERKDAGCYRAMVANRTKEKLSSQNLQAHA 236

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH-APILPRFIEKECDDIQKEE 307
              ++YLK+  EM  +F D+ +AL NTV I+ +C++  +    PILP F   E      +E
Sbjct: 237  ESEYYLKSPEEMAMLFPDISKALTNTVIISDKCTYAFKKKDHPILPHFHLPEG---FSDE 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR+    G + + A    A G  ++D   R++ EL VI +M FS YFLIV+D I  +
Sbjct: 294  AAYLRHLTWEGAKEKYADSG-ADGISSEDVEARIELELGVIEKMGFSSYFLIVSDLIAAS 352

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++    VGPGRGS AGS+ AY   IT IDPL++ LLFERFLNP+R SMPD DIDF    +
Sbjct: 353  RRLGYSVGPGRGSAAGSIVAYLTGITRIDPLKYKLLFERFLNPERSSMPDIDIDFTPVGK 412

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +V+ Y   KYG E VA++I  G+L AKAA+RD GR L++P   VDRL KL+P  P   +
Sbjct: 413  QKVLEYTVEKYGSESVAKVIAIGTLGAKAAIRDAGRVLEVPLPVVDRLAKLVPTKPG--I 470

Query: 488  SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L+ AI++    ++   + P    LL+ ++ LEG  R+ S HA  +VI   PL + VP+Y
Sbjct: 471  TLEKAISEVRELKQFVESSPQTRELLDYARALEGRARNVSMHAGAVVITAGPLEEQVPLY 530

Query: 547  ------RDVRS-----DLP------------------VTQFNMKWIEKAGLIKFDFLGLK 577
                   +VR      DL                   VTQF+  WIEKAGL+K D LGL+
Sbjct: 531  VSNKIETEVRKYADELDLGEPDPVVSKTAEVADEKQVVTQFDKNWIEKAGLLKIDLLGLE 590

Query: 578  TLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            TL ++ ++L  + +R  + ++L  +P +D +T+ +       GIFQ ESSGM+  +  +Q
Sbjct: 591  TLAVIDETLRLIQRRHQRTIELEKLPMNDRKTFRIFQEGKMAGIFQFESSGMQNYMTRLQ 650

Query: 637  PDCIEDIIALVSLYRPGPID-------NIV-VYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            P  I DIIA+ +LYRPG ++       N V ++ +RK+G+E I  +HP+++ +LKET GV
Sbjct: 651  PTQIGDIIAMSALYRPGALNARIDDHRNAVDLFVDRKHGREAIDYMHPMLEIILKETYGV 710

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQVMQI+Q++ G+SL++AD LR+AMGKK  E M K +E FI GA   G+   +A  
Sbjct: 711  IVYQEQVMQISQVMGGFSLAKADDLRKAMGKKKPEIMSKYEEDFIKGAVAQGVHDALARR 770

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            +F L+A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A +  E+ ++E++K    +
Sbjct: 771  VFTLMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFMTAILNSEIGDIERMKHLTDE 830

Query: 809  ARQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKP--F 862
            A+ F I  +PPS+N     F V    G   I   L+AIK VG   AR I+ +   K   F
Sbjct: 831  AKSFGIATLPPSINKSDTLFSVEEHNGKASIRVGLSAIKQVG-GAARAIVTSRMRKKREF 889

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             +L D  + +D + +NR+ LE L+ +GALD     R +L+ ++D   K+ Q   ++ T  
Sbjct: 890  INLFDLTASLDLRLMNRKALECLILSGALDEIDEHRARLIANIDKAIKFGQVQNRSVTLG 949

Query: 923  HENIFAHEKGTFSDKITLEKFSVEN---SSVRFENEQRVLGFYFSGHPLDVYK 972
                F  E G   + I        +    S +  +E++++GFY S HPL  Y+
Sbjct: 950  QCGFFTSEHGGVMEDIHYPDMDPADPMPDSEKLLHEKKLVGFYLSRHPLSTYR 1002


>gi|47094219|ref|ZP_00231932.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 4b
            H7858]
 gi|226224175|ref|YP_002758282.1| DNA polymerase III (alpha subunit) DnaE [Listeria monocytogenes
            Clip81459]
 gi|47017408|gb|EAL08228.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 4b
            H7858]
 gi|225876637|emb|CAS05346.1| Putative DNA polymerase III (alpha subunit) DnaE [Listeria
            monocytogenes serotype 4b str. CLIP 80459]
 gi|328465072|gb|EGF36346.1| DNA polymerase III, alpha subunit [Listeria monocytogenes 1816]
          Length = 1108

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 371/1032 (35%), Positives = 590/1032 (57%), Gaps = 49/1032 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + + +Q  L   N  +        ++L+  +  GY  L+++ S +   ++G +   
Sbjct: 63   IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE--- 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   +  LI ++ G+ G I+R     + + A +      ++FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P   
Sbjct: 169  ---NPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+ Y  ++ +M   +    E  A   T E+A RC   + +   +LPRF   E  +     
Sbjct: 226  PN-YFTSQEDMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNEGQNAS--- 281

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I+++
Sbjct: 282  -DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYS 332

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RR
Sbjct: 333  REAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     +
Sbjct: 393  DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450

Query: 488  SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +LQ A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 451  TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F+V  ++ I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962
            +D + +Y   + ++  +K  N+FA E   F  K+          S+  + E E+   G Y
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             S HP+  Y+  L+ + I      +A +  G N ++AA V   +  +T+KG  + ++T S
Sbjct: 927  VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982

Query: 1022 EPAKEYEANFFP 1033
            + +KE  A  FP
Sbjct: 983  DDSKELSAVMFP 994


>gi|47096787|ref|ZP_00234369.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 1/2a
            F6854]
 gi|254898259|ref|ZP_05258183.1| hypothetical protein LmonJ_00550 [Listeria monocytogenes J0161]
 gi|254912248|ref|ZP_05262260.1| DNA polymerase III [Listeria monocytogenes J2818]
 gi|254936575|ref|ZP_05268272.1| DNA polymerase III [Listeria monocytogenes F6900]
 gi|47014820|gb|EAL05771.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 1/2a
            F6854]
 gi|258609171|gb|EEW21779.1| DNA polymerase III [Listeria monocytogenes F6900]
 gi|293590225|gb|EFF98559.1| DNA polymerase III [Listeria monocytogenes J2818]
          Length = 1108

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 370/1032 (35%), Positives = 591/1032 (57%), Gaps = 49/1032 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + + +Q  L   N  +        ++L+  +  GY +L+++ S +   ++G +   
Sbjct: 63   IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHQLLKIASAIQTREEGPE--- 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   ++ LI+++ G+ G I+R       + A +      ++FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSSD-LIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +    +++   +    +P+VAT N  +L  +D +A +VL A+  +  V     P   
Sbjct: 169  ---NPRLFAKIETFSSEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+ Y  ++ EM   +    E  A   T E+A RC   + +   +LPRF   E  +     
Sbjct: 226  PN-YFTSQDEMERDWQTAFEKQACLETGELANRCHVEIALDQHLLPRFPLNEGQNAS--- 281

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I+++
Sbjct: 282  -DVLRQTAFAGLKERNLLG--------MEYQERLEYELKVITEMGFADYFLIVWDVIRYS 332

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  +  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RR
Sbjct: 333  REAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     +
Sbjct: 393  DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450

Query: 488  SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +LQ A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 451  TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP +  +L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S+  A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F++  +  I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962
            +D + +Y   + ++  +K  N+FA E   F  K+          S+  + E E+   G Y
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFA-EDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             S HP+  Y+  L+ + I      +A +  G N ++AA V   +  +T+KG  + ++T S
Sbjct: 927  VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982

Query: 1022 EPAKEYEANFFP 1033
            + +KE  A  FP
Sbjct: 983  DDSKELSAVMFP 994


>gi|167768149|ref|ZP_02440202.1| hypothetical protein CLOSS21_02705 [Clostridium sp. SS2/1]
 gi|317499630|ref|ZP_07957892.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167709673|gb|EDS20252.1| hypothetical protein CLOSS21_02705 [Clostridium sp. SS2/1]
 gi|291560175|emb|CBL38975.1| DNA polymerase III catalytic subunit, DnaE type [butyrate-producing
           bacterium SSC/2]
 gi|316893105|gb|EFV15325.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 1151

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 372/979 (37%), Positives = 567/979 (57%), Gaps = 41/979 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SF HL VH+ YSLL+G+  +  ++ +       +IAITD   ++  ++F + A A GI+P
Sbjct: 2   SFTHLHVHTEYSLLDGSSKIKELVHQAKELGMDSIAITDHGAMYGVIDFYRAAKAEGIKP 61

Query: 70  IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IIGC++ +       K  +QG   +     +VLL     GY  L+++VSR +  +     
Sbjct: 62  IIGCEIYVTTGSRFDKEASQGDKRYY---HLVLLAQNDTGYHNLMKIVSRGFT-EGFYYK 117

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
            R+    L+E   EGLI L+   +G +      N+ + A+   L  + LFG D  ++ LQ
Sbjct: 118 PRVDYEVLEEY-KEGLIALSACLAGEVATYIRENNYEKAKNTALRLQDLFGKDNFFLELQ 176

Query: 188 RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H   D+ +  + +++++    + LVATN+  +  +ED EAHD+L+ +     V  +DR 
Sbjct: 177 DHGIPDQTKVNTALLKMSKETGIDLVATNDIHYTFKEDAEAHDILLCIQTGKKVQDEDRM 236

Query: 247 RVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           R     +YLK+  EM  +F    EA+ENT +IA+RC+  +      +P +   E      
Sbjct: 237 RYEGGQYYLKSPEEMQRLFPYAREAIENTGKIAKRCNVEIVFGEQKVPEYDVPEG----- 291

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                    AV  L   L +  + + Y    ++ R+RLD+EL  I  M +  YFLIV DF
Sbjct: 292 -------YTAVTYLN-HLCEEGLKRRYPNITKELRERLDYELKTIENMGYVDYFLIVWDF 343

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           I +AK++ I VGPGRGS AGS+ +Y L ITDIDP+R+ LLFERFLNP+R+SMPD D+DFC
Sbjct: 344 IHYAKEHGIAVGPGRGSAAGSIVSYCLEITDIDPIRYQLLFERFLNPERVSMPDIDVDFC 403

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            +RR EVI YV  KYG ++V QIITFG++ A+A +RDVGR L +PY++VD + K++PN+ 
Sbjct: 404 YERRQEVIDYVVRKYGKDQVVQIITFGTMAARAVIRDVGRVLDIPYAKVDGISKMVPNEL 463

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              +  +A+      R A   D     L+++S++LEGL RHAS HAAG+VIG   + + V
Sbjct: 464 NITID-KALKISKDLRNAYEQDEETHYLIDMSKRLEGLPRHASMHAAGVVIGKTAIDEYV 522

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
           P+      +  VTQF M  IE+ GL+K DFLGL+TLT++Q +   + ++    D++ I  
Sbjct: 523 PLATGA-DNAAVTQFTMTTIEELGLLKMDFLGLRTLTVIQDAEKMVRRKVPDFDITKIDP 581

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            D E Y ++    T G+FQLESSGM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y  
Sbjct: 582 TDKEVYEMIGNGHTEGVFQLESSGMKSFMKELKPQNMEDIIAGISLYRPGPMDFIPRYIE 641

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            KN +E I      ++ +L+ T G I+YQEQVMQI   L+GY+L  +D++RRAM KK  +
Sbjct: 642 GKNHQESIHYECEQMEEILEPTYGCIVYQEQVMQIVMKLAGYTLGRSDLVRRAMSKKKGD 701

Query: 724 EMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M K+++ F        I G   NGI +  A  I++ +  FA Y FNKSHAAAYAV++Y+
Sbjct: 702 VMIKERQNFVYGNEEEGIPGCINNGIDEKTANQIWDEMLDFAKYAFNKSHAAAYAVVAYR 761

Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
           TA+++ HYPVEF+AA +T  + N  KI ++    ++  I+I+PP +N     F V    I
Sbjct: 762 TAYLRCHYPVEFMAALLTSVLGNTNKISEYSYACKKLGIKILPPDINYGEGAFSVDHGNI 821

Query: 836 YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            Y L AIK +G      I+ E + + P+   +D   R+ SK++N+R +E+L+ +GALDCF
Sbjct: 822 RYGLTAIKSLGRPVIEAIIRERNLNGPYRDFKDLVERLSSKEINKRTVENLIKSGALDCF 881

Query: 895 GYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             +R Q +      +D+IQK  +     + +  + +   ++ +F  +I+           
Sbjct: 882 HVTRKQQMIVYASVIDSIQKERKNEIAGQMSLMDLLGEEDQQSF--QISYPDVGEYEKEQ 939

Query: 951 RFENEQRVLGFYFSGHPLD 969
           +   E+ VLG Y SGHPL+
Sbjct: 940 KLAMEKEVLGIYVSGHPLE 958


>gi|294055954|ref|YP_003549612.1| DNA polymerase III, alpha subunit [Coraliomargarita akajimensis DSM
            45221]
 gi|293615287|gb|ADE55442.1| DNA polymerase III, alpha subunit [Coraliomargarita akajimensis DSM
            45221]
          Length = 1243

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 392/1102 (35%), Positives = 595/1102 (53%), Gaps = 88/1102 (7%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            EK   FVHL VH+ +SLL+G   ++ +  + A     A++ITD   L+    F ++A   
Sbjct: 3    EKDREFVHLHVHTDHSLLDGCSRVDRLCSRAAELGMKALSITDHGVLYGLTSFFKQAEKH 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+P++GC++ +  ++ L   N+ +    +   + LL     GYQ L ++VS+ +   QG
Sbjct: 63   GIKPLLGCEIYLVYEEKLAEVNELRAKQKS-RHMGLLARNFTGYQNLCKIVSKAHT--QG 119

Query: 126  -KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              ++ R  L  L    +EGLI  +G  +  I +    +  + A +    F  +FG   ++
Sbjct: 120  FYRNPRTDLETLA-AHSEGLIGFSGCLAAVIPQYLLEDKFEEAREAAAKFIDIFGKEFFI 178

Query: 185  NLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                  G    R+    ++++A   +L +VATN+  ++++ D++ HD ++ +     V+ 
Sbjct: 179  IELMDHGIPEQRKIIPGLLKIATEFDLKVVATNDVHYVNDADWQPHDSMLCIQTGAKVAD 238

Query: 243  KDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILPRFIEK 298
            + R R      YLK+R EM   F ++PEA+ NT  IA  C   L     H P+  R IE 
Sbjct: 239  EKRMRYDAQQFYLKSREEMDLAFKEVPEAITNTSGIAEMCEVKLPFGVDHYPVYERPIEI 298

Query: 299  ECD----------DIQKEEENEL-----------------RNKAVAGLEVRLAQGAIAKG 331
            +            DI  E++NE+                 ++K+       L +  + + 
Sbjct: 299  DSGSDHENFERVLDIYVEKKNEILVRDGKDPIELNAETRAKHKSNGLYLFELCKAGLNER 358

Query: 332  YHA----------------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
            Y                  + Y ++L++EL +IA   F  YFLIV DFI WA++++IPVG
Sbjct: 359  YGTNYDACRADWDNSSEADKRYCEQLEYELAIIAGTGFVDYFLIVWDFINWAREHDIPVG 418

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
            PGRGSGAG + AY L ITDIDPL F LLFER LN +R+S PDFD+DFC  RRD V+ YV+
Sbjct: 419  PGRGSGAGCLVAYVLKITDIDPLSFGLLFERMLNLERVSPPDFDVDFCMRRRDLVVNYVR 478

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
            +KYG +RVA IITFG+  AK  +RD+ R   + +S+ ++L K+IP++      L    DD
Sbjct: 479  DKYGKDRVANIITFGTFGAKMVVRDLARVNDIEFSEANKLAKMIPDE------LNISLDD 532

Query: 496  SRFREARL-----ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            S  +   L      +P    ++E  + +EG+ R+   HA G++I D+ ++ L+P+     
Sbjct: 533  SVKKSPELQQELKVNPVAQTIIEQGRVIEGMVRNTGKHACGVIIADQDITNLIPVTLQ-E 591

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--AQRGVKVDLSLIPFDDHET 608
             DL  TQ+     E  GL+K DFLGLKTLT++  +   +   +R    D+  +   D  T
Sbjct: 592  GDL-TTQYPKGPSEDLGLLKMDFLGLKTLTVIDDAQTNVRNTRRMPDFDIEKVSLKDQPT 650

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y LL +  T  +FQLES GM+Q    +     E+IIAL++LYRPGP+  I  +   K   
Sbjct: 651  YDLLNSGRTTAVFQLESGGMQQLCRQIGLSSFEEIIALIALYRPGPMQFIPQFIEGKKDP 710

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
              +   HPL+  +++ET GV++YQEQVMQ AQ+++GY+L  AD+LRRAMGKKIKE MD Q
Sbjct: 711  STVQIPHPLLKDLVQETYGVLVYQEQVMQSAQIIAGYTLGGADILRRAMGKKIKEVMDAQ 770

Query: 729  KERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            K+ FI GA + N I +  A +IF LL KFA YGFNKSH+AAYA++SY+TA++K +YPVEF
Sbjct: 771  KQVFIDGAKATNNIDRKTAESIFALLEKFAQYGFNKSHSAAYAMLSYRTAFLKANYPVEF 830

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GD-NRIYYSLAAIK 843
            +AA +T E  N +K+  F ++    N+ ++ P VN     F     GD + I + +AAIK
Sbjct: 831  MAAVLTSEQGNADKLSNFLEECNAMNVPVLSPDVNASGATFTPIINGDESSIRFGMAAIK 890

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG   A  I+E    D P++S  DF +R   K +NRRV+E+L+  GA D  G+ R  LL
Sbjct: 891  GVGEGAALVIIEERDKDGPYESFTDFITRSSDKAVNRRVIEALIKTGAFDSLGHDRAHLL 950

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIF---AHEKGTFSD---KITLEKFSVENSSVRFENEQ 956
              LD     A    K+R     ++F    ++ G   +   + T  K      + + ++E+
Sbjct: 951  HDLDAELAEADSRRKDREAGQASLFDMLGNDAGIAEEDQTRKTPPKIPEMPMAEKLQHEK 1010

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NNIRLAAMVVSKQQKKTRKG 1012
             +LGFY SGHP+D Y  +   M I  ++ +    R        RL  +V + Q K TRK 
Sbjct: 1011 DLLGFYISGHPMDAYAGL--DMAIDSFQNADDLKRNFDDRQTYRLGGIVSNLQIKYTRKD 1068

Query: 1013 SR-IGWVTFSEPAKEYEANFFP 1033
            SR +     +   + YE   FP
Sbjct: 1069 SRQMAVFNVATRTQNYELIMFP 1090


>gi|16803614|ref|NP_465099.1| hypothetical protein lmo1574 [Listeria monocytogenes EGD-e]
 gi|224501486|ref|ZP_03669793.1| hypothetical protein LmonFR_03047 [Listeria monocytogenes FSL R2-561]
 gi|254831975|ref|ZP_05236630.1| hypothetical protein Lmon1_11500 [Listeria monocytogenes 10403S]
 gi|284801965|ref|YP_003413830.1| hypothetical protein LM5578_1720 [Listeria monocytogenes 08-5578]
 gi|284995107|ref|YP_003416875.1| hypothetical protein LM5923_1672 [Listeria monocytogenes 08-5923]
 gi|16411003|emb|CAC99652.1| dnaE [Listeria monocytogenes EGD-e]
 gi|284057527|gb|ADB68468.1| hypothetical protein LM5578_1720 [Listeria monocytogenes 08-5578]
 gi|284060574|gb|ADB71513.1| hypothetical protein LM5923_1672 [Listeria monocytogenes 08-5923]
          Length = 1108

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 370/1032 (35%), Positives = 591/1032 (57%), Gaps = 49/1032 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + + +Q  L   N  +        ++L+  +  GY +L+++ S +   ++G +   
Sbjct: 63   IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHQLLKIASAIQTREEGPE--- 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   ++ LI+++ G+ G I+R       + A +      ++FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSSD-LIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +    +++   +    +P+VAT N  +L  +D +A +VL A+  +  V     P   
Sbjct: 169  ---NPRLFAKIETFSSEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+ Y  ++ EM   +    E  A   T E+A RC   + +   +LPRF   E  +     
Sbjct: 226  PN-YFTSQDEMERDWQTAFEKQACLETGELANRCHVEIALDQHLLPRFPLNEGQNAS--- 281

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I+++
Sbjct: 282  -DVLRQTAFAGLKERNLLG--------MEYQERLEYELKVITEMGFADYFLIVWDVIRYS 332

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  +  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RR
Sbjct: 333  REAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     +
Sbjct: 393  DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450

Query: 488  SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +LQ A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 451  TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP +  +L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S+  A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F++  +  I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962
            +D + +Y   + ++  +K  N+FA E   F  K+          S+  + E E+   G Y
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFA-EDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             S HP+  Y+  L+ + I      +A +  G N ++AA V   +  +T+KG  + ++T S
Sbjct: 927  VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982

Query: 1022 EPAKEYEANFFP 1033
            + +KE  A  FP
Sbjct: 983  DDSKELSAVMFP 994


>gi|224499768|ref|ZP_03668117.1| hypothetical protein LmonF1_08799 [Listeria monocytogenes Finland
            1988]
          Length = 1108

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 370/1032 (35%), Positives = 591/1032 (57%), Gaps = 49/1032 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + + +Q  L   N  +        ++L+  +  GY +L+++ S +   ++G +   
Sbjct: 63   IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHQLLKIASAIQTREEGPE--- 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   ++ LI+++ G+ G I+R       + A +      ++FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSSD-LIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +    +++   +    +P+VAT N  +L  +D +A +VL A+  +  V     P   
Sbjct: 169  ---NPRLFAKIETFSSEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+ Y  ++ EM   +    E  A   T E+A RC   + +   +LPRF   E  +     
Sbjct: 226  PN-YFTSQDEMERDWQTAFEKQACLETGELANRCHVEIALDQHLLPRFPLNEGQNAS--- 281

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I+++
Sbjct: 282  -DVLRQTAFAGLKERNLLG--------MEYQERLEYELKVITEMGFADYFLIVWDVIRYS 332

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  +  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RR
Sbjct: 333  REAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     +
Sbjct: 393  DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450

Query: 488  SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +LQ A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 451  TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP +  +L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S+  A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F++  +  I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962
            +D + +Y   + ++  +K  N+FA E   F  K+          S+  + E E+   G Y
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             S HP+  Y+  L+ + I      +A +  G N ++AA V   +  +T+KG  + ++T S
Sbjct: 927  VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982

Query: 1022 EPAKEYEANFFP 1033
            + +KE  A  FP
Sbjct: 983  DDSKELSAVMFP 994


>gi|254828191|ref|ZP_05232878.1| DNA polymerase III [Listeria monocytogenes FSL N3-165]
 gi|258600578|gb|EEW13903.1| DNA polymerase III [Listeria monocytogenes FSL N3-165]
          Length = 1108

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 370/1032 (35%), Positives = 591/1032 (57%), Gaps = 49/1032 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + + +Q  L   N  +        ++L+  +  GY +L+++ S +   ++G +   
Sbjct: 63   IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHQLLKIASAIQTREEGPE--- 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   ++ LI+++ G+ G I+R       + A +      ++FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSSD-LIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +    +++   +    +P+VAT N  +L  +D +A +VL A+  +  V     P   
Sbjct: 169  ---NPRLFAKIETFSSEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+ Y  ++ EM   +    E  A   T E+A RC   + +   +LPRF   E  +     
Sbjct: 226  PN-YFTSQDEMERDWQTAFEKQACLETGELANRCHVEIALDQHLLPRFPLNEGQNAS--- 281

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I+++
Sbjct: 282  -DVLRQTAFAGLKERNLLG--------MEYQERLEYELKVITEMGFADYFLIVWDVIRYS 332

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  +  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RR
Sbjct: 333  REAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     +
Sbjct: 393  DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450

Query: 488  SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +LQ A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 451  TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP +  +L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S+  A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F++  +  I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETAIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962
            +D + +Y   + ++  +K  N+FA E   F  K+          S+  + E E+   G Y
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFA-EDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             S HP+  Y+  L+ + I      +A +  G N ++AA V   +  +T+KG  + ++T S
Sbjct: 927  VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982

Query: 1022 EPAKEYEANFFP 1033
            + +KE  A  FP
Sbjct: 983  DDSKELSAVMFP 994


>gi|217964278|ref|YP_002349956.1| DNA polymerase III subunit alpha [Listeria monocytogenes HCC23]
 gi|217333548|gb|ACK39342.1| DNA polymerase III subunit alpha [Listeria monocytogenes HCC23]
          Length = 1108

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 372/1032 (36%), Positives = 590/1032 (57%), Gaps = 49/1032 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + + +Q  L   N  +        ++L+  +  GY  L+++ S +   ++G +   
Sbjct: 63   IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE--- 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   +  LI ++ G+ G I+R     +   A +       +FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENRDGALEAYANLVDIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +    +++   +    +P+VAT N  +L  +D +A +VL A+  +  V     P   
Sbjct: 169  ---NPRLFAKIETFSAEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIF-SDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+ Y  ++ EM   + +D   +A   T E+A RC   + +   +LPRF   E  +     
Sbjct: 226  PN-YFTSQEEMERDWQTDFEKQACFETGELADRCHVEIALDQHLLPRFPLTEGQN----A 280

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR  A  GL+ R   GA        +Y++RL++EL VI  M F+ YFLIV D I+++
Sbjct: 281  PDVLRQTAYDGLKERDLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRYS 332

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  +  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RR
Sbjct: 333  REAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     +
Sbjct: 393  DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450

Query: 488  SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +LQ A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 451  TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSKGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F+V  ++ I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962
            +D + +Y   + ++  +K  N+FA E   F  K+          S+  + E E+   G Y
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             S HP+  Y+  L+ + I      +A +  G N ++AA V   +  +T+KG  + ++T S
Sbjct: 927  VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982

Query: 1022 EPAKEYEANFFP 1033
            + +KE  A  FP
Sbjct: 983  DDSKELSAVMFP 994


>gi|300766000|ref|ZP_07075971.1| DNA polymerase III, alpha subunit [Listeria monocytogenes FSL N1-017]
 gi|300513318|gb|EFK40394.1| DNA polymerase III, alpha subunit [Listeria monocytogenes FSL N1-017]
          Length = 1108

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 370/1032 (35%), Positives = 590/1032 (57%), Gaps = 49/1032 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + + +Q  L   N  +        ++L+  +  GY  L+++ S +   ++G +   
Sbjct: 63   IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE--- 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   +  LI ++ G+ G I+R     + + A +      ++FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P   
Sbjct: 169  ---NPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+ Y  ++ +M   +    E  A   T E+A RC   + +   +LPRF   E  +     
Sbjct: 226  PN-YFTSQEDMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNEGQNAS--- 281

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I+++
Sbjct: 282  -DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYS 332

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I  GPGRGS AGS+ +YAL+ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RR
Sbjct: 333  REAGILTGPGRGSAAGSLVSYALSITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV +KYG   VAQI  FG+L AKAA+RD  R+  +    +    KLIP+     +
Sbjct: 393  DEVISYVVSKYGEAHVAQIGMFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450

Query: 488  SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +LQ A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 451  TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F+V  ++ I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962
            +D + +Y   + ++  +K  N+FA E   F  K+          S+  + E E+   G Y
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             S HP+  Y+  L+ + I      +A +  G N ++AA V   +  +T+KG  + ++T S
Sbjct: 927  VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982

Query: 1022 EPAKEYEANFFP 1033
            + +KE  A  FP
Sbjct: 983  DDSKELSAVMFP 994


>gi|317124660|ref|YP_004098772.1| DNA polymerase III subunit alpha [Intrasporangium calvum DSM 43043]
 gi|315588748|gb|ADU48045.1| DNA polymerase III, alpha subunit [Intrasporangium calvum DSM 43043]
          Length = 1197

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 383/1085 (35%), Positives = 586/1085 (54%), Gaps = 80/1085 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL VH+ YS+L+GA  + ++  + A    PA+A TD   +F A EF +KA   G++P
Sbjct: 12   NFVHLHVHTEYSMLDGAARIGDLFTEAARMGMPALATTDHGYVFGAYEFWKKAKGTGVKP 71

Query: 70   IIGCQLDID----MQDNLKMT--NQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMY 120
            IIG +  I       D  K++  + G+       +   + +L    +G   L  + S   
Sbjct: 72   IIGVEAYITPGTHRADRTKVSWGDGGRDDVSGSGAYTHMTMLAENNDGMHNLFRMSSIAS 131

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179
            L     +  RI    L   G +GLI+ TG  S  I     F     A +     + +FG 
Sbjct: 132  LDQVYTKWPRIDRELLSSYG-KGLIVTTGCPSSEIQTKLRFGMYDAAREVAGELRDIFGR 190

Query: 180  DRLYVNLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            D ++V L  H G D  R +Q  +++LA   +LPL+ATN+  +   ED +AH  L+ V   
Sbjct: 191  DNVFVELMDH-GLDIERRTQRELIRLARDLDLPLLATNDLHYTRAEDAKAHAALLCVQSG 249

Query: 238  TVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF-ILQVHAPILPRF 295
            + +   +R +    D YLK+  EM  ++ +LPEA +NT+ +A RC     +     +PRF
Sbjct: 250  STLMDPNRFKFDAEDFYLKSAQEMRHLWRELPEACDNTLLVAERCEVSFTEGEGRFMPRF 309

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY-RQRLDFELNVIARMKFS 354
               E +D    E +    +   GL+ R  +G         DY R++  FE +VI    +S
Sbjct: 310  PVPEGED----ETSWFIKEVETGLQRRFPEGV-------PDYARKQAAFEEDVIVSKGYS 358

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD+DP+   L+FERFLNP+RMS
Sbjct: 359  GYFLVVADFINWAKRNGIRVGPGRGSGAGSMCAYAMGITDLDPIPHGLIFERFLNPERMS 418

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFD+DF + RR EVI+YV  KYG ERVAQI+T+G+++AK A++D  R +  P+S  ++
Sbjct: 419  MPDFDVDFDERRRGEVIKYVTEKYGSERVAQIVTYGTIKAKQAVKDAARVMGHPFSVGEQ 478

Query: 475  LCKLIPNDP-AHPVSLQAI--------ADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            L K +P D     V L  I         + S FR     +   + +++ ++ LEGL R  
Sbjct: 479  LTKAMPPDVMGKGVPLAEIYNPEHKRYNEGSEFRALVQTERHFEEVVDAAKGLEGLKRQW 538

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
              HAAG+++   PL  ++P+ + ++    +TQF+    E  GL+K DFLGL+ LT+L  +
Sbjct: 539  GVHAAGVIMSSEPLIDVIPIMKRLQDGQVITQFDYPSCEALGLVKMDFLGLRNLTILDDA 598

Query: 586  LDFL-AQRGVKVDLSLIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            ++ + A R + +DL  +  D  D  TY LL    TLG+FQL+  GMR  L  MQPD  ED
Sbjct: 599  IENIKANRDLDIDLDALSKDMTDRATYDLLGRGDTLGVFQLDGGGMRALLRLMQPDNFED 658

Query: 643  IIALVSLYRPGPIDNIVVYNN---RKNGKEKIVSIHP------------LIDPMLKETQG 687
            I A ++LYRPGP+  +  + N   RKNGK+ +  + P             ++P+L  T G
Sbjct: 659  ISAALALYRPGPM-GVNAHTNFALRKNGKQALTPLDPKLEGKLQPEMVAALEPILGTTYG 717

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            ++IYQEQVM+IAQ L+GY+L  AD+LRRAMGKK KE +D +   F  G  + G ++    
Sbjct: 718  LVIYQEQVMEIAQKLAGYTLGNADLLRRAMGKKKKEVLDAEYVPFSDGMKQKGFNEASVK 777

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++E+L  F+DY FNK+H AAY ++SY T ++K +YP E++AA +T   D+ +K   +  
Sbjct: 778  ALWEVLVPFSDYAFNKAHTAAYGLVSYWTGYLKANYPAEYMAALLTSVRDDKDKSALYLN 837

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLE 866
            + R   I+++PP VN    +F      I + +AAI+ VG      +++A  +K  F S +
Sbjct: 838  ECRHMGIKVLPPDVNESVANFAAVGTDIRFGMAAIRNVGVPVVEAVIKAREEKGAFASFK 897

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF S+V +   N+R +ESL+ AGA D  G SR  +++  +        V+K      +++
Sbjct: 898  DFLSKVPAVVCNKRTIESLIKAGAFDSLGESRRGMVEVHERYVDALVEVKKQEAIGQDSL 957

Query: 927  FA-----------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            F               G F     +     + +++    E+ +LG Y S HPL   + IL
Sbjct: 958  FGAFDMGDQSGSTGGAGAFDGLPGVPSLEWDKATL-LSFEREMLGLYVSDHPLFGIEHIL 1016

Query: 976  RKMGIKGYEESVATIRGNN-------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            +       + S+A++ G++       + +A ++ S Q K+T+KG      T  +     E
Sbjct: 1017 QSHA----DTSIASLTGDDPKPDGTPVTVAGLITSLQLKRTKKGDLWAIATVEDLDGAIE 1072

Query: 1029 ANFFP 1033
              FFP
Sbjct: 1073 CLFFP 1077


>gi|331092255|ref|ZP_08341083.1| hypothetical protein HMPREF9477_01726 [Lachnospiraceae bacterium
            2_1_46FAA]
 gi|330401687|gb|EGG81266.1| hypothetical protein HMPREF9477_01726 [Lachnospiraceae bacterium
            2_1_46FAA]
          Length = 1157

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 383/1052 (36%), Positives = 605/1052 (57%), Gaps = 52/1052 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G+  +   + ++      + AITD   +F  ++F + A A GI+PI
Sbjct: 3    FAHLHVHTEYSLLDGSNKIKEYVARVKELGMDSAAITDHGVMFGVIDFYRAAKAEGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +  Q   +   +  T       +VLL    +GY+ L ++VS+ ++ +      R
Sbjct: 63   LGCEVYVAPQS--RFDKEVGTREDRYYHLVLLAENNKGYENLTKIVSKAFV-EGYYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
            +    L++   EG+I L+   +G + +       + A K    ++K+FG    ++ LQ H
Sbjct: 120  VDYELLEQY-HEGIIALSACLAGEVQKNLLRGMYEEAVKSAKRYEKIFGKGNFFLELQDH 178

Query: 190  RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++   +Q +++L+    + LVATN+  +   ED + HD+L+ +     +  ++R R 
Sbjct: 179  GIPEQATVNQRLLRLSQDTGIELVATNDVHYTYAEDEKPHDILLCIQTGKKLQDENRMRY 238

Query: 249  TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +Y+K+  EM  +F    +ALENT +IA RC   ++     LPR+     D      
Sbjct: 239  EGGQYYVKSPEEMAELFPYALQALENTQKIADRCDVEIEFGVTKLPRY-----DVPSGYT 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E  NK        L    +A  Y    ++  +RL +EL+VI +M +  YFLIV DFI+
Sbjct: 294  SWEYLNK--------LCFDGLASRYQPVTEELGERLTYELSVIQKMGYVDYFLIVWDFIK 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+ N+I VGPGRGS AGS+ +Y L ITDIDP+R+ LLFERFLNP+R+SMPD DIDFC +
Sbjct: 346  YARDNDIMVGPGRGSAAGSIVSYCLGITDIDPIRYQLLFERFLNPERVSMPDIDIDFCFE 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV  KYG +RV QI+TFG++ A+  +RDVGR + +PY+ VD + K+IP +   
Sbjct: 406  RRQEVIDYVVRKYGADRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDTIAKMIPTELNM 465

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++ +A++ +   ++    D  V  L+++S +LEGL RH S HAAG+VI  +P+ + VP+
Sbjct: 466  TLT-KALSVNPELKKVYEEDAEVKELIDMSLRLEGLPRHTSMHAAGVVISQKPVDEYVPL 524

Query: 546  YRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--GVKVDLSLIP 602
               + +D  V TQF M  +E+ GL+K DFLGL+TLT++Q +   LA++  G K+D+  I 
Sbjct: 525  --SLGADGAVTTQFTMTTLEELGLLKMDFLGLRTLTVIQNAAK-LAEKSSGHKIDMHKIN 581

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            ++D E    + T  T GIFQLES+GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y 
Sbjct: 582  YNDKEVLESIGTGKTDGIFQLESAGMKNFMKELKPQNLEDIIAGISLYRPGPMDFIPQYI 641

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              KN +  I    P ++P+L+ T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK  
Sbjct: 642  KGKNDRGSITYDCPQLEPILESTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKA 701

Query: 723  EEMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            + M+K+++ F+ G  +        NGI +  A  I++ +  FA Y FNKSHAAAYAV++Y
Sbjct: 702  DVMEKERQNFVYGNEEEGVPGCVANGIPEETANKIYDEMIDFAKYAFNKSHAAAYAVVAY 761

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEF+AA MT  +DN  K+ ++   +RQ  I I+PP +N    +F V +  
Sbjct: 762  QTAYLKYYYPVEFMAALMTSVIDNPGKVSEYIYASRQMGIHILPPDINEGEGNFSVDNGN 821

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y LAAIK +G      I+ E      + +L++F  R+  K++N+R +E+ + AGA D 
Sbjct: 822  IRYGLAAIKSIGRPVIEAIITEREIGGKYQNLKNFIERLSGKEVNKRTIENFIKAGAFDS 881

Query: 894  FGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
               +R QL+    Q LD + K  +     + +  + +   +K  F   +   K   + + 
Sbjct: 882  LPGTRKQLMMIYIQILDQVNKDRKNSMSGQMSLFDLVDEEQKKEFDIPLPDVKEYEKETM 941

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRK------MGIK-GYEESVATIR-GNNIRLAAMV 1001
            + FE E  VLG Y SGHP++ Y+ + +K      M  + G E   + +R G+   +  ++
Sbjct: 942  LAFEKE--VLGVYVSGHPMEEYEELWKKSISATTMDFQPGEETGRSKVRDGSKEIIGGLI 999

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V+K  K T+    + ++T  +     E   FP
Sbjct: 1000 VNKTIKYTKNNKVMAFLTIEDLLGTVEVVIFP 1031


>gi|323488459|ref|ZP_08093706.1| DNA polymerase III DnaE [Planococcus donghaensis MPA1U2]
 gi|323397966|gb|EGA90765.1| DNA polymerase III DnaE [Planococcus donghaensis MPA1U2]
          Length = 1020

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 366/1040 (35%), Positives = 584/1040 (56%), Gaps = 75/1040 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S V+  + +S  LL+  + L+ +   +      ++AI +T  L+  L F +    AGI  
Sbjct: 2    SMVYPHISTSADLLKSTVRLDELFPFLKEQGASSVAIVNTK-LYGMLPFWEACRRAGIHG 60

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G    I+ ++                S+VL   + +GY  L+++ S +   D+     
Sbjct: 61   VVGLSTFIEYEEQHY-------------SVVLYAQSNKGYDNLLKISSALATRDKEA--- 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPI--DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             I   WL+    EGLI +    +  +  DR+                K LFG   + +++
Sbjct: 105  -IPEQWLKAY-KEGLICVIPNKAEWLLTDRSLVIG----------YIKSLFGQAAFGSIE 152

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R  G     ES  ++L    E+P++AT+   ++ ++D  A++V  A+     +   D  R
Sbjct: 153  RPGGVVSAYESDFIELCAQLEIPIMATHEIRYMHQQDAFAYEVASAIGQG--LKMNDPER 210

Query: 248  VTPDH---YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             TP+H   Y+ ++ E    F+D  E ++ T  + + C   + ++  +LP +   E    Q
Sbjct: 211  QTPEHTNAYVPSQQEFFEWFADRNEWVQQTANMLKSCRVTIPMNQQLLPVYPLSE----Q 266

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             ++ + +      GL+ R+ +         ++Y++RL++EL+VIA+M F  YFLIVADF+
Sbjct: 267  VDKASYIAQLCKTGLKERVPR-------FPENYQERLNYELSVIAKMGFIDYFLIVADFM 319

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++AK  +I  GPGRGS A S+ AY+L IT++DP+   LLFERFLNP+R+++PD DIDF  
Sbjct: 320  KYAKDQDIMTGPGRGSSASSLVAYSLKITNVDPIEHGLLFERFLNPERVTLPDIDIDFAD 379

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR EV+ YV  KYG  R AQIITFG+L AKA  RD  R       +++ + KLI N P 
Sbjct: 380  HRRHEVVDYVAKKYGAVRTAQIITFGTLSAKAVARDTARVFGFEAEELEAISKLISNRPG 439

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +   A+ + S+F +  +         + + KLEGL RHASTHAAG+++   PL   VP
Sbjct: 440  TTLR-SALKESSKFNDWIIEREERKSWFKTALKLEGLPRHASTHAAGVILSPTPLVNHVP 498

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ--KSLDFLAQRGVKVDLSLIP 602
            + +     + +TQ+ M+ +E  GL+K DFLGL+ LT+L+  ++L +   +  K++ S IP
Sbjct: 499  IEKG-HEGIYLTQWPMQELEAIGLLKMDFLGLRNLTILEQIRNLVYWGTKQ-KINYSDIP 556

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +T+ LL +  T G+FQLES GMRQAL+ +QP    DI+A+ +LYRPGP++ I +Y 
Sbjct: 557  LDDEKTFKLLASGDTTGVFQLESDGMRQALQQIQPTAFGDIVAVNALYRPGPMEFIPLYA 616

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G+E +  IHP+++P+L ET GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ KK +
Sbjct: 617  RRKHGQETVKYIHPILEPILSETYGVIVYQEQIMHIAAKMAGFSLGEADLLRRAVSKKKR 676

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E +D+++E F+ GA+  G +K+ A  +++L+ +FADYGF KSHA AY++ISYQ ++MK H
Sbjct: 677  EILDEEREHFVLGATSKGFTKSEAAEVYDLIVRFADYGFPKSHAVAYSMISYQLSYMKAH 736

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YPV F  + +T    N EK K+  Q+ ++  I I+PPSV      F V D +I + L A+
Sbjct: 737  YPVYFYTSLLTNSAGNAEKTKQLLQEIKEKKIPILPPSVQKSRHTFSVEDGQIRFGLNAV 796

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KGV  TT + ++ A  + PF  L +   R+ +   NR+  E L+ AGALD FGY R  +L
Sbjct: 797  KGVPGTTIKALLAAREEGPFTGLFNIAERISALHFNRKSFEPLIKAGALDEFGYDRGVIL 856

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD------KITLEKFSVENSSVRFENEQ 956
             SLD+  K+A+ V+ N           E G F D      K    K S    +++ E E+
Sbjct: 857  ASLDSAIKHAELVKPN----------DEPGLFDDMGASFMKPKYTKASEMPENLKLEFEK 906

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIRG-NNIRLAAMVVSKQQKKTRKGS 1013
             VLGFY S HP++  K    +   K Y+  +S+ + R   ++++  ++   ++ +T+KG 
Sbjct: 907  DVLGFYLSKHPIEREK----EHRQKSYDALKSLKSKRDRESVKVLGVIEEIKRIRTKKGD 962

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             + ++T  +         FP
Sbjct: 963  AMAFLTLMDETGPASVTLFP 982


>gi|116873003|ref|YP_849784.1| DNA polymerase III, alpha subunit [Listeria welshimeri serovar 6b
            str. SLCC5334]
 gi|116741881|emb|CAK21005.1| DNA polymerase III, alpha subunit [Listeria welshimeri serovar 6b
            str. SLCC5334]
          Length = 1108

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 374/1034 (36%), Positives = 595/1034 (57%), Gaps = 53/1034 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGK-TPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IG          + +T QG   P  +   I++  STA GY +L+++ S +   ++G +  
Sbjct: 63   IG----------MTVTIQGYFNPINSYELILIAESTA-GYHQLLKIASAIQTREEGPE-- 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
             +  SWL+   ++ LI ++ G+ G I+R     +   A +       +FG+  +Y++ Q+
Sbjct: 110  -LPQSWLRAYSSD-LIAISPGAKGEIERLLMEENRDGALEAYENLVAIFGNSSVYLSAQK 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +    +++   +   E+P+VAT +  +L  +D +A +VL A+  +  V     P  
Sbjct: 168  E---NPRLFAKIEVFSAEEEVPVVATKDVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLA 224

Query: 249  TPDHYLKNRSEMVSIF-SDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P+ Y  ++ EM   + +D   +A   T ++A RC   + +   +LPRF   E    ++ 
Sbjct: 225  GPN-YFSSQDEMERDWQTDFEKQACLETGKLAERCHVEIALDQHLLPRFPLDE----KQN 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR  A AGL+ R            ++Y+ RLD+EL VI  M F+ YFLIV D I++
Sbjct: 280  ASDVLRQTAYAGLKER--------DLLTREYQNRLDYELKVITEMGFADYFLIVWDVIRY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +R
Sbjct: 332  SREAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     
Sbjct: 392  RDEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGMT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 452  LP-KALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ---KSLDFLAQRGVKVDLSLIPF 603
                 D  +TQF M  +EK GL+K DFLGL+ L+LL    KS+++ +++   + L+ I  
Sbjct: 511  LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYASEK--PLTLADISL 567

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  
Sbjct: 568  EDKKTLTLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIA 627

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  +
Sbjct: 628  RKHGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKAD 687

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +++++  F+ GA   G S+  A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K HY
Sbjct: 688  VLNEERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHY 747

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAI 842
            P  F+++ ++    N +KI ++  +A+ + I ++ PS+N     F++  +  I YS   I
Sbjct: 748  PAAFMSSLLSSVFGNDDKISQYITEAKNYGINMLAPSINHSNYYFQMENETSIRYSFRVI 807

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            + V       I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L
Sbjct: 808  RKVPAKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATIL 867

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLG 960
             ++D + +Y   + ++  +K  N+FA E   F  K+          S+  + E E+   G
Sbjct: 868  ATIDAVLQYISLLGED--SKGMNLFA-EDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTG 924

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y S HP+  Y+  L+ + I      +A I  G N ++AA V   +  +T+KG  + ++T
Sbjct: 925  QYVSAHPVSYYQNKLQNLSIT----KLANITSGKNYQVAAYVHEVKSIRTKKGETMCFLT 980

Query: 1020 FSEPAKEYEANFFP 1033
             S+ +KE  A  FP
Sbjct: 981  ISDDSKELSAVMFP 994


>gi|78187124|ref|YP_375167.1| DNA polymerase III, alpha subunit [Chlorobium luteolum DSM 273]
 gi|78167026|gb|ABB24124.1| DNA polymerase III, alpha subunit [Chlorobium luteolum DSM 273]
          Length = 1188

 Score =  617 bits (1590), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 370/1011 (36%), Positives = 553/1011 (54%), Gaps = 62/1011 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YS+    +    +  K A+    ++A+TD   +F+  E    A  AG++ I
Sbjct: 3    FVHLHAHTHYSMQSSPIFPGELFTKAASLGMKSVAVTDYCAIFNMPELFSDAAGAGVRLI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +    +       +Q K      PS+VLLV    GY+ L  L+SR    D     + 
Sbjct: 63   IGSE----LLLLEGEEHQQKQA--QAPSLVLLVQNETGYRNLCVLLSRASK-DGFHNGMP 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                 L E   +GL  L+  SSG I RA    ++  AE +   ++++FG+R ++ LQRH 
Sbjct: 116  HVDPKLLETYHDGLFCLSAYSSGRIGRALLSGAAGEAESQAAYYREVFGNRFHLELQRHS 175

Query: 191  G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQKDRPRV 248
              YD    +  V L     +PLVATNN  +L   D   +  ++A      + SQ      
Sbjct: 176  THYDDELNAATVALGEKLSIPLVATNNVHYLERRDAGCYRAMVANRTKEKLSSQNLLALP 235

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              ++YLK+  EM  +F D    L  T+ IA  C++      PILP F   E      +E 
Sbjct: 236  GKEYYLKSPEEMGLLFDDRYGELSATLRIAEACTYAFSEKDPILPHFPVPEA---FPDEA 292

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR+    G   +        G   +D ++R++ EL VI +M FS YFLIV+D IQ ++
Sbjct: 293  AYLRHLTWEGAREKYGDNP-EDGITPEDVKERIELELGVIEKMGFSSYFLIVSDLIQASR 351

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            K    VGPGRGS AGS+ AY   IT IDPL++ LLFERFLNP+R+SMPD DIDF    + 
Sbjct: 352  KMGYSVGPGRGSAAGSIVAYLTGITRIDPLKYKLLFERFLNPERLSMPDIDIDFTPVGKQ 411

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +V+ Y   KYG E VA+++  G+L AKAA+RD  R L++P S  DRL KL+P+ P   + 
Sbjct: 412  KVLEYTVEKYGPESVAKVVAVGTLGAKAAIRDAARVLEVPLSVADRLAKLVPSRPGTTLE 471

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY-- 546
             +A+ +    RE   + P +  L++ ++ LEG  R+ S HA  +VI + PL + VP+Y  
Sbjct: 472  -KALLEVKELREYADSTPEIRELMDYARALEGRARNVSMHAGAVVITEGPLEEQVPLYVS 530

Query: 547  -----------RDVRSDLP----------------VTQFNMKWIEKAGLIKFDFLGLKTL 579
                        ++  D P                VTQF+  WIE AGL+K D+LGL TL
Sbjct: 531  NKIETEERQYADEIDLDEPAAGKPKSADGAGEKQVVTQFDKNWIETAGLLKIDYLGLVTL 590

Query: 580  TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
             ++ ++L  + +R GV ++L  +P +D +T+ +       GIFQ ESSGM+  +  +QP 
Sbjct: 591  AVIDETLRLIKKRHGVDIELEEVPMNDRKTFKIFQEGKMAGIFQFESSGMQSYMTRLQPT 650

Query: 639  CIEDIIALVSLYRPGPID-------NIV-VYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
             I DIIA+ +LYRPG ++       N V ++ +RK+G+E I  +HP+++ +LKET GVI+
Sbjct: 651  QIGDIIAMSALYRPGALNARIDEKRNAVDLFVDRKHGRETIDYMHPMLETILKETYGVIV 710

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVMQI+Q++ G+S+++AD LR+AMGKK  E M+K K  F+ G  + G+  ++A  +F
Sbjct: 711  YQEQVMQISQVMGGFSMAKADNLRKAMGKKKPEIMEKFKADFVKGGVEQGVHDSLATRVF 770

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            EL+A+FA YGFNKSH+AAY V++Y T W+K HY +EF+ A +  E+ + E++K    +A+
Sbjct: 771  ELMAEFAGYGFNKSHSAAYGVLAYWTGWLKAHYTIEFMTAILNSEIGDTERMKHLTDEAK 830

Query: 811  QFNIQIMPPSVNTP----CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
             F I I+PPS+N       VD   G   I   L+AIK VG   AR I+ A   +  D L 
Sbjct: 831  SFGISILPPSINKSDALFSVDDSTGPPAIRVGLSAIKQVG-GAARAIITARLRRKRDYLN 889

Query: 867  --DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              D  + VD + +NR+ LE L+  GA D     R +LL ++D   K+ Q   +  T    
Sbjct: 890  LFDLTASVDQRVMNRKALECLILCGAFDEIDPHRARLLANIDKAIKFGQIENRAVTLGQC 949

Query: 925  NIFAHEKGTFSDKI---TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              F+ E+GT  +      +E  +      +  +E++++GFY S HPL  ++
Sbjct: 950  GFFSVEEGTVEEDAHYPDMEPAAEMPEPEKLMHEKKLVGFYLSRHPLSPWR 1000


>gi|163815364|ref|ZP_02206739.1| hypothetical protein COPEUT_01529 [Coprococcus eutactus ATCC 27759]
 gi|158449338|gb|EDP26333.1| hypothetical protein COPEUT_01529 [Coprococcus eutactus ATCC 27759]
          Length = 1195

 Score =  617 bits (1590), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 367/988 (37%), Positives = 565/988 (57%), Gaps = 32/988 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL VH+ YSLL+GA  +  ++ +       ++AITD   ++  +EF +   A GI+PI
Sbjct: 3   FTHLHVHTGYSLLDGAAKIKELVHRAKELGYDSLAITDHGVMYGVIEFYEACMAEGIKPI 62

Query: 71  IGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           +GC++ +       +   +G   +     +VLL  T +GY  L ++V+R +  +      
Sbjct: 63  LGCEVYVSPGSRFDREVGKGDDRYY---HLVLLAETDQGYHNLSKIVTRGFT-EGFYYKP 118

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-VNLQR 188
           R+ +  L++   EG+I L+   +G +      N  + A K  + ++ +FG+  Y + +Q 
Sbjct: 119 RVDMEVLEKY-HEGIIALSACLAGEVATHLRKNDYEGARKAAVKYRNIFGENNYFLEMQD 177

Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H   D+    + V++L+    +P+V TN+S ++  ED+EAHDVL+ +  +  V  ++R R
Sbjct: 178 HGIPDQATVNAGVMRLSKELGIPMVVTNDSHYIYAEDWEAHDVLLCIQTNRKVQDENRMR 237

Query: 248 VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +YLK++ EM  +F    EALENT +IA RC+  +      +PRF   +  D    
Sbjct: 238 YDGGQYYLKSKEEMAELFPYALEALENTHKIAERCNVKIIFGEQKVPRF---DVPDGYTA 294

Query: 307 EENELRNKAVAGLE----VRLAQGA-IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
           EE  L      G+E    ++ A    +++G    D RQR+D+EL+VI  M F  YFLIV 
Sbjct: 295 EEY-LEKLVYDGMERKYGIKYADTEDLSEGDKGYDVRQRIDYELSVIKSMGFVDYFLIVW 353

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFI +AK N I VGPGRGS  GSV AY L IT I+P+++ LLFERFLNP+R+SMPD DID
Sbjct: 354 DFIHFAKTNGIAVGPGRGSAVGSVVAYCLDITTIEPMQYDLLFERFLNPERVSMPDIDID 413

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC  RR EVI Y   KYG E V QII + ++ A+  +RDVGRA+ +PY+Q D L K IP 
Sbjct: 414 FCYIRRQEVIDYCVKKYGEECVTQIIAYQTMGARNVIRDVGRAMDIPYAQCDALAKAIPA 473

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
           +    + + A+     F++       + +L++I++KLEGL R+A  HAAG+VIG   + +
Sbjct: 474 EKDMTIDI-ALKTSKDFQDMYRGSDEIRKLVDIAKKLEGLPRNAGMHAAGVVIGREAIEE 532

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSL 600
             P+       + VTQF    +E  G++K DFLGL+T T++Q ++  + +  G  +D+  
Sbjct: 533 YAPLSVGAEGAV-VTQFEKNTVEHLGMLKMDFLGLRTATVIQDTVKLIKENTGRDLDIDN 591

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
           I +DD     L+    T G+FQLES GM+  +  ++P  ++D+IA V+L+RPGP+  I  
Sbjct: 592 IDYDDPNILGLMGQGKTEGMFQLESPGMKNFMMKLKPQSLDDVIAGVALFRPGPMQFIDD 651

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
           Y   K  +E +    P ++ +L+ T G IIYQEQVMQI   L+GY+L  +D++RRAM KK
Sbjct: 652 YIRGKENRELVRYDTPELEEILEPTYGCIIYQEQVMQIVMKLAGYTLGRSDLVRRAMAKK 711

Query: 721 IKEEMDK--------QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
             EEM+K         KE  + G   NGIS+ +A  IF+ + KFA+Y FNKSH+ AYAV+
Sbjct: 712 KPEEMEKERKNFVYGNKELNVPGCVANGISEDVANKIFDEMMKFAEYAFNKSHSVAYAVL 771

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
           + QTA++K +YPVEF+AA ++  +DN  K+ K+    +Q N++I+PP +N     F + D
Sbjct: 772 AAQTAYLKYYYPVEFMAALISSVLDNNGKVAKYINVCKQMNVEILPPDINEGVAKFSISD 831

Query: 833 NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +I Y L+ IK VG      I+E    +  F  L DF +R+ SK  N++ +E+L+ +GA 
Sbjct: 832 GKIRYGLSGIKSVGAAVVDRIVEERKKNGRFKDLHDFLTRMPSKDTNKKTVEALILSGAF 891

Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN--SS 949
           D  G +R Q+  +L  I +      K+R +   ++F      F+    +    VE    +
Sbjct: 892 DGMGANRKQMFMALPAISEETARERKSRESGQLSLFDIMGEDFAASTRVPYPEVEEYPDT 951

Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRK 977
            +   E+ VLG Y SGHPL  Y  +L+K
Sbjct: 952 EKLSLEKSVLGVYISGHPLGKYVDLLQK 979


>gi|257068282|ref|YP_003154537.1| DNA polymerase III subunit alpha [Brachybacterium faecium DSM 4810]
 gi|256559100|gb|ACU84947.1| DNA polymerase III, alpha subunit [Brachybacterium faecium DSM 4810]
          Length = 1191

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 394/1080 (36%), Positives = 583/1080 (53%), Gaps = 68/1080 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VH+ YSLL+GA  ++ ++ +     QPA+AITD   LF A EF + A  AGI
Sbjct: 6    SDDFVHLHVHTDYSLLDGAAKIDKLVAETVRQGQPAVAITDHGYLFGAYEFYKAAKDAGI 65

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPT---------------VPSIVLLVSTAEGYQRL 112
            +PIIG +  +         ++ +T + T                  + LL  +  G   L
Sbjct: 66   KPIIGIEAYV--TPGTSRHDRTRTQWGTREQQLAGDDVSARGAYTHMTLLSHSTTGMHNL 123

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
              L S   L  Q  +  R+    L +  ++GLI  TG  SG +           A K   
Sbjct: 124  FRLGSAASLEGQMGKWPRMDREILSQY-SDGLIATTGCPSGEVQTRLRLGQFDEAVKAAG 182

Query: 173  TFKKLFG-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             F+ +FG +  +V L  H G D  +     ++++A     PL+ATN+  +++E+D    D
Sbjct: 183  EFQDIFGKEHYFVELMDH-GLDIEKRVSKDLLEVAKAVGAPLLATNDLHYVTEQDATIQD 241

Query: 230  VLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            VL+ +   + ++  DR +     +YLK+  +M  +F ++PEA +NT+ +A  C    +  
Sbjct: 242  VLLCINSGSRLNDPDRFKFGGSGYYLKSAQQMRELFREMPEACDNTLRVAEMCDVEFRTT 301

Query: 289  AP---ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            A     +P F     +D    EE+    +   GLE R   G         D ++R D+E+
Sbjct: 302  AEGANYMPHFPTPPGED----EESWFVKEVQRGLEYRYPAGI------PDDVQKRADYEV 351

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +VI +M F GYFL+V+D+I+WAK+ +I VGPGRGSGAGS+ AYA+ ITD+DPL   LLFE
Sbjct: 352  SVILQMGFPGYFLVVSDYIKWAKEQDIRVGPGRGSGAGSMVAYAMRITDLDPLEHGLLFE 411

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNPDR+SMPDFD+DF   RR EVI YV+ KYG +R+AQ+ T+G ++ K +L+D  R L
Sbjct: 412  RFLNPDRVSMPDFDVDFDDRRRGEVIEYVERKYGDDRIAQVATYGVMKTKNSLKDAARVL 471

Query: 466  QMPYSQVDRLCK-LIPNDPAHPVSLQAIAD--DSRFREA----RL--ADPSVDRLLEISQ 516
              P+S  DRL K L P      +S++ I D  D R+ EA    R+   DP V +++EI++
Sbjct: 472  DYPFSMGDRLSKALPPTVMGKDISVKGIFDPEDKRYAEAGEFRRIHDEDPDVQKVVEIAK 531

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             +EGL R    HA  +++   PL  +VPM R       +TQF    +E  GL+K DFLGL
Sbjct: 532  GVEGLTRGWGVHACAVIMSSDPLVDIVPMMRRPSDGQIITQFEYPTLETLGLLKMDFLGL 591

Query: 577  KTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            + LT+L  ++  +A+ G    DL  +PFDD  TY LL    TLG+FQL+ SGMR  L  M
Sbjct: 592  RNLTVLSDAVANMARNGKTPPDLETLPFDDPATYELLQKGDTLGVFQLDGSGMRTLLRQM 651

Query: 636  QPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVI 689
            +PD   DI A+ +LYRPGP  + +   Y  RKNG ++I  IHP L +P+   L ET GV+
Sbjct: 652  KPDQFGDITAVSALYRPGPMGMGSHTNYALRKNGLQEITPIHPELEEPLAEILDETYGVL 711

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQ AQ ++GYSL EAD+LRRAMGKK K E+DKQ   F +G   NG S      +
Sbjct: 712  VYQEQVMQTAQKVAGYSLGEADILRRAMGKKKKAELDKQYVSFEAGMKSNGYSDAAVQAL 771

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +E L  FADY FNKSH+AAY V+SY TA++K ++P E++AA +T   +N +++  +  D 
Sbjct: 772  WETLLPFADYAFNKSHSAAYGVVSYWTAYLKANHPTEYMAALLTSTQENRDRLGLYLGDC 831

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDF 868
            R   I ++PP VN   + F      I + L+AI+ VG      I++   +K  F S  DF
Sbjct: 832  RHRGITVLPPDVNESDLYFSAVGEDIRFGLSAIRNVGAHVVEEIIKTREEKGAFTSFTDF 891

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHE 924
              +V     N+R +ESL+  GA D  G +R  L+     ++D++    +   + + +   
Sbjct: 892  LDKVPLSVCNKRTIESLIKGGAFDELGANRRSLVLIHEDAVDSVVDVKRKEAQGQYDLFA 951

Query: 925  NIFAHEKGTFSDK--------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            ++FA   G   +         IT+      +   +   E+ +LG Y S HPL   + ++ 
Sbjct: 952  DMFAGAGGDGEESMASGSAATITVPDLPEWDRKEKLAFERNMLGLYVSDHPLYGLEHVIA 1011

Query: 977  K---MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +     I    +  A   G  + +A ++ S Q+K T+KG      T  +     +   FP
Sbjct: 1012 QNSSTSISALADDGAVQDGTMVTIAGLITSLQRKTTKKGDMWAIATVEDLEGSIDCLLFP 1071


>gi|16800677|ref|NP_470945.1| hypothetical protein lin1609 [Listeria innocua Clip11262]
 gi|16414096|emb|CAC96840.1| dnaE [Listeria innocua Clip11262]
          Length = 1108

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 369/1032 (35%), Positives = 592/1032 (57%), Gaps = 49/1032 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + + +Q  L   N  +        ++L+  +  GY  L+++ S +   ++G +   
Sbjct: 63   IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE--- 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   +  LI ++ G+ G ++R     +   A +       +FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSS-NLIAISPGAKGEVERLLMEENRDGALEVYENLVSIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +    +++   +   + P+VAT +  ++  +D +A +VL A+  +  V     P   
Sbjct: 169  ---NPRLFAKIEAFSAEEKAPVVATKDVQYMEPKDAQAKEVLTAIRDNRTVDWATLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+ Y  +++EM   +    E  A   T ++A RC   + +   +LPRF   E    ++  
Sbjct: 226  PN-YFTSQAEMERDWQTGFEKQACLETEKLAERCHVEIALDQHLLPRFPLNE----EQNA 280

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR  A AGL+ R           A++Y++RLD+EL VI  M F+ YFLIV D I+++
Sbjct: 281  PDVLRETAYAGLKER--------NLLAKEYQERLDYELKVITEMGFADYFLIVWDVIRYS 332

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RR
Sbjct: 333  REAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     +
Sbjct: 393  DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450

Query: 488  SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +LQ A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 451  TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S++ A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K HYP 
Sbjct: 690  NEERIHFVEGARSKGYSESSANQVYDMIIQFANYGFNRSHAAAYSKIAFQLAYLKAHYPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F++  +  I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGINMLAPSINHSNYYFQMENETSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFKDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962
            +D + +Y   + ++  +K  N+FA E   F  K+          S+  + E E+   G Y
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             S HP+  Y+  L+ + I      +A++    I ++AA V   +  +T+KG  + ++T S
Sbjct: 927  VSAHPVSYYQNKLQNLAIT----RLASVSSGKIYQVAAYVHEVKSIRTKKGETMCFLTIS 982

Query: 1022 EPAKEYEANFFP 1033
            + +KE  A  FP
Sbjct: 983  DESKELSAVMFP 994


>gi|296129453|ref|YP_003636703.1| DNA polymerase III, alpha subunit [Cellulomonas flavigena DSM 20109]
 gi|296021268|gb|ADG74504.1| DNA polymerase III, alpha subunit [Cellulomonas flavigena DSM 20109]
          Length = 1187

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 390/1088 (35%), Positives = 579/1088 (53%), Gaps = 91/1088 (8%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            + PSFVHL VHS YS+L+GA  +  +LD+     Q A+AITD   LF A EF QKA   G
Sbjct: 7    EDPSFVHLHVHSEYSMLDGAARIGEMLDEAKRLGQTAMAITDHGYLFGAFEFWQKATERG 66

Query: 67   IQPIIGCQLDID-----MQDNLKMTNQGKTPFPTVPS------IVLLVSTAEGYQRLIEL 115
            I+PIIG +  +         N     +       V +      + LL  T EG   L  +
Sbjct: 67   IKPIIGVEAYVTPGTSRFDQNRVRWGEAHQAADDVSARGAYTHLTLLSRTTEGMHNLFRM 126

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S   +  Q  +  R+    L     +GLI  +G  SG I           A +     +
Sbjct: 127  GSLASVEGQMGKWPRMDRELLSRY-ADGLIATSGCPSGEIQTRLRLGHVDEALRAAGELQ 185

Query: 176  KLFG-DRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
             +FG +  +V +  H G +  R     ++++A     P+VATN+  +  EED  AH+VL+
Sbjct: 186  DIFGKEHFFVEVMDH-GLEIERRVIKDLLRIAEGIGAPIVATNDLHYTREEDAHAHEVLL 244

Query: 233  AVAHSTVV----SQKDRPRVT---PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            AV   + +    S +   R       +Y+K+ +EM   +++LPEA +NT+ +A +C    
Sbjct: 245  AVQSGSTLDEPTSDQGGSRFAFGGTGYYVKSAAEMRRTWAELPEACDNTLLVAEQCEVKF 304

Query: 286  QVHAPILPRFI----EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
               A  +PRF     E E     KE EN L         +R   GAI         R++ 
Sbjct: 305  NTGANYMPRFPVPAGENEDSWFVKEVENGL---------LRRYHGAIP-----DHVRKQA 350

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            D+E  VI ++ FSGYFL+VADFI WAKK  I VGPGRGS AGS+ +YA+ IT++DPL   
Sbjct: 351  DYETGVITQLGFSGYFLVVADFINWAKKQGIRVGPGRGSAAGSMASYAMGITELDPLEHG 410

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            L+FERFLNP+R+S PD D+DF + RR EVIRYV  KYG +RV QI+T+G+++AK AL+D 
Sbjct: 411  LIFERFLNPERVSWPDVDVDFDERRRGEVIRYVTEKYGDDRVCQIVTYGTIKAKQALKDA 470

Query: 462  GRALQMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSV 508
             R L  P++  ++L K +P              DP HP      A+   FR+   ADP  
Sbjct: 471  SRVLGFPFAMGEKLTKAMPPPVMGKDIPLSGMYDPEHP----RYAEADEFRQVVAADPEA 526

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
             R+LE ++ LE L R    HAAG+++   PL  ++P+ +  +    +TQF+    E  GL
Sbjct: 527  QRVLETARGLENLKRQWGVHAAGVIMSSEPLLDIIPIMKRPQDGAIITQFDQPASESLGL 586

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            IK DFLGL+ LT+L  +L+ +   G   + +  +  DD  TY LL    TLG+FQL+   
Sbjct: 587  IKMDFLGLRNLTILDDALENIVMNGKPPILIEEVALDDPPTYELLGRGDTLGVFQLDGGP 646

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM--- 681
            MR  L  M+PD  ED+ A+++LYRPGP  +++   Y  RKNG ++I  IHP L++P+   
Sbjct: 647  MRSLLRQMRPDNFEDVSAVIALYRPGPMGMNSHTNYALRKNGLQEIEPIHPELVEPLEDV 706

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            +  T G+I+YQEQV + AQ L+GYSL +AD+LRRAMGKK KE +DK+   F +G  + G 
Sbjct: 707  VGVTYGLIVYQEQVQRAAQKLAGYSLGQADLLRRAMGKKKKEVLDKEFVPFQAGMRERGY 766

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            S      ++++L  FA Y FNK+H+AAY V+SY TA++K ++P E++AA +T   D+ +K
Sbjct: 767  SDAAIQAVWDVLVPFAGYAFNKAHSAAYGVVSYWTAYLKANFPTEYMAALLTSVRDDKDK 826

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK- 860
               +  + R   I ++PP VN+   +F      I + L A++ VG      I+ A  +K 
Sbjct: 827  SALYLGECRHMGITVLPPDVNSSSANFTAVGKDIRFGLTAVRNVGANVVDAIVAAREEKG 886

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVE 916
             F S  DF  +V +   N+R +ESL+ AGA D  G++R  LL    Q++D +      V+
Sbjct: 887  AFTSFTDFLDKVPAVVCNKRTIESLIKAGAFDSLGHARRALLLVHEQAVDAVID----VK 942

Query: 917  KNRTNKHENIFA-----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            +       ++FA      E GT    + +      +   R   E+ +LG Y S HPL   
Sbjct: 943  RKEATGQFDLFADLGGGDETGT-GIAVQIPDLPDWDKKQRLAFEREMLGLYVSDHPLSGL 1001

Query: 972  KPILRKMGIKGYEESVATIR-------GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            + +L        + S+AT+        G+ + +A +V S Q+K +++G+    VT  +  
Sbjct: 1002 EHVLSAQA----DVSIATLNADTERPDGSTVVVAGLVTSLQRKMSKQGNPWAAVTLEDME 1057

Query: 1025 KEYEANFF 1032
               E  FF
Sbjct: 1058 GGVEIMFF 1065


>gi|62184719|ref|YP_219504.1| DNA polymerase III subunit alpha [Chlamydophila abortus S26/3]
 gi|62147786|emb|CAH63532.1| putative DNA polymerase III alpha subunit [Chlamydophila abortus
            S26/3]
          Length = 1248

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 377/1080 (34%), Positives = 593/1080 (54%), Gaps = 66/1080 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+ + + K    Q P++A+TD  NL+ A+EF ++     I+P
Sbjct: 8    TWIPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECQQNDIKP 67

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +          + K+       ++LL     GY+ L  L+S +   +      
Sbjct: 68   IIGCEVYVAPSSRFDKKKEKKSR--VAHHLILLCKNELGYRNLC-LLSSLAFTEGFYYFP 124

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +   EGLI L+   S  + +A    S +  EK L  ++ LFG+  Y  +Q H
Sbjct: 125  RIDRELLSQ-HAEGLICLSACLSSSVAQAAL-ESEEALEKDLRWYQNLFGEDFYSEIQLH 182

Query: 190  R----------------GYDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +                 Y ++ +SQ      V+  +    +  VATN+  ++  +D+ A
Sbjct: 183  KMSEEKIASLGEEWLKHEYYQFIDSQTKVNQAVLDASKRLGIRSVATNDIHYIHADDWLA 242

Query: 228  HDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+ V           ++ + + K +   + ++Y K+  EM  +F+D PE + NT+E+
Sbjct: 243  HEILLNVQLGETIRIAKQNTYIPNPKRKTFRSREYYFKSPEEMARLFADHPETITNTLEV 302

Query: 278  ARRCSFILQV---HAPI-LPRFIEKECDDIQKEEENE----LRNKAVAGLEVRLAQ---G 326
            A +C+  L +   H PI +P F++ + +  ++E        LR     GL  +       
Sbjct: 303  ADKCNLHLNLSSKHYPIYVPEFLKSKQNYTEEERYAASAAFLRELCEKGLSTKYTPEKLA 362

Query: 327  AIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
             I+K +  +D     ++RL+ E+++I       Y LIV D I WAK N IPVGPGRGSGA
Sbjct: 363  HISKKFPDRDPLELVKERLEMEMSIIIPKGMCDYLLIVWDIIYWAKDNGIPVGPGRGSGA 422

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + 
Sbjct: 423  GSVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDN 482

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            VAQIITFG+++AK A++DVGR L +P S+V+ + K IP    +    +A+  D    E  
Sbjct: 483  VAQIITFGTMKAKMAVKDVGRTLDVPLSKVNHIAKHIPE--LNTTLAKALETDPHLNELY 540

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMK 561
              D    ++++++ +LEG  R+   HAAG++I GDR L+  +P+     S +  TQF+MK
Sbjct: 541  TNDAEAAQVIDMAMRLEGSIRNTGVHAAGVIICGDR-LTNHIPICISKDSTMITTQFSMK 599

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620
             +E  G++K DFLGLKTLT +  ++  + ++ G  ++++ +P DD  T+ LL    T+GI
Sbjct: 600  PVESVGMLKVDFLGLKTLTSIHIAMRAIEKKTGKLLEMASLPLDDKTTFALLHQGKTMGI 659

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ+ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++ 
Sbjct: 660  FQMESKGMQELAKNLRPDSFEEIIAIGALYRPGPMDMIPSFINRKHGKEIIEYDHPLMES 719

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  ++M K++ RF   A KNG
Sbjct: 720  ILKETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDIDQMLKERTRFCERARKNG 779

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            I   +A  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E
Sbjct: 780  IDAELATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTSDSDDIE 839

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
            KI K   +A   +I I+PP +N    DF   D  I +++ AI+G+G      I+E     
Sbjct: 840  KIGKLIHEAHSMDICILPPDINESGTDFVATDKGIRFAMGAIRGIGKGLVESIIEEREKH 899

Query: 861  -PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P+ S+ DF  R D KK+ ++  E+L+ AG  D F   R     +L+++       +K  
Sbjct: 900  GPYQSIRDFIQRSDLKKVTKKHTENLIDAGCFDVFEPDRDVAQATLESLYDSISKEKKEA 959

Query: 920  TNKHENIFA----HEKGTFSDKITLEKFSVENSSVR-FENEQRVLGFYFSGHPLDVYKPI 974
                   F+    H+K      +T     V  S     + E+ +LG Y + HP+D  K I
Sbjct: 960  ATGVMTFFSLNAMHQKHPIP--LTPATNVVRRSKKDILKKEKELLGIYLTEHPMDAVKDI 1017

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033
            L ++ +    E      G  IR   ++     + + KG R    +  ++    YE   +P
Sbjct: 1018 LPRLSVVSPGEFANLPHGAVIRTIFIIDKVTTRISSKGQRKFALLRVNDGVDSYELPIWP 1077


>gi|322648192|gb|EFY44659.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. OH_2009072675]
          Length = 826

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 322/706 (45%), Positives = 450/706 (63%), Gaps = 33/706 (4%)

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP
Sbjct: 1    MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNP 60

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY 
Sbjct: 61   ERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYG 120

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
             VDR+ KL+P DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA 
Sbjct: 121  FVDRISKLVPPDPGMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAG 179

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + 
Sbjct: 180  GVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMIN 239

Query: 591  QRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            +R  K     +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IA
Sbjct: 240  KRREKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIA 299

Query: 646  LVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQI 698
            LV+L+RPGP+ + +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQI
Sbjct: 300  LVALFRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQI 359

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+LSGY+L  AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA 
Sbjct: 360  AQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAG 419

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+P
Sbjct: 420  YGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILP 479

Query: 819  PSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKK 876
            P +N+    F V D   I Y + AIKGVG      I++A +    F  L D C+R D+KK
Sbjct: 480  PDINSGLYHFHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKK 539

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            LNRRVLE L+ +GA D  G  R  L+ SL +  K A    K       ++F    G  ++
Sbjct: 540  LNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE 595

Query: 937  KITLEKFSVENS---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEES 986
                E   +E S          V  + E+  LG Y +GHP++ Y K I R +G    ++ 
Sbjct: 596  ----EPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDM 651

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T RG     A +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 652  HPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 697


>gi|184201117|ref|YP_001855324.1| DNA polymerase III subunit alpha [Kocuria rhizophila DC2201]
 gi|183581347|dbj|BAG29818.1| DNA polymerase III alpha subunit [Kocuria rhizophila DC2201]
          Length = 1184

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 379/1000 (37%), Positives = 560/1000 (56%), Gaps = 58/1000 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            F HL VH+ YS+L+GA  LN++ ++       ++A TD   +F A +F  KA AAGI+P
Sbjct: 9   GFTHLHVHTEYSMLDGAARLNDLFEECHRLGMDSLATTDHGFVFGAFDFWNKARAAGIKP 68

Query: 70  IIGCQLDID----MQDN--LKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMY 120
           IIG +  +      QD   +K  + G+       +   + LL  ++EG Q L    ++  
Sbjct: 69  IIGVEAYLTPGTARQDRTRVKFADGGRDDVSGAGAYTHMTLLAQSSEGMQNLFRASTKAS 128

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179
           L  Q  +  R+    L + G +GLI  TG  SG +           A K    F+ +FG 
Sbjct: 129 LEGQLYKP-RMDRELLNQYG-KGLIATTGCPSGEVQTRLRLGQYDEAVKAAAEFRDIFGA 186

Query: 180 DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
           +  Y  L  H  G ++     +++LA    LPLVATN+  +   ED ++H  L+ V   +
Sbjct: 187 ENFYCELMDHGLGIEKRVTQDLLRLAKELNLPLVATNDLHYTHAEDAKSHAALLCVQSGS 246

Query: 239 VVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            +    R +   D  YLK+  +M  +F D P+A +NT+EIA RC       A  +PRF  
Sbjct: 247 TLQDPKRFKFDADEFYLKSPEQMRELFRDFPDACDNTLEIAERCEVEFDTSANYMPRFPT 306

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            E +D    E +    +   GL  R  +G         D R++ ++E  +I +M F GYF
Sbjct: 307 PEGED----ETSWFIKEVEKGLHYRFPEGI------PDDVREQAEYEKKIIIQMGFPGYF 356

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           L+VADFI W+K N I VGPGRGSGAGS+ AYA+ IT+++PL   L+FERFLNPDR+SMPD
Sbjct: 357 LVVADFINWSKDNGIRVGPGRGSGAGSMVAYAMRITELNPLAHGLIFERFLNPDRVSMPD 416

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
           FD+DF   RR EVI YV  KYG ERVA I+T+G+++AK AL+D  R L  P+S  +RL K
Sbjct: 417 FDVDFDDRRRSEVIHYVTEKYGDERVAMIVTYGTIKAKQALKDSSRVLGYPFSMGERLTK 476

Query: 478 LIPNDP-AHPVSLQAIADD--------SRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            +P D     +SLQ + D            RE    DP   ++ E +Q LEGL R    H
Sbjct: 477 AMPPDVMGKGISLQDVYDKDAKRYDEAGELREVLEDDPESMKVFETAQGLEGLKRQWGVH 536

Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
           AAG+++   PL  ++P+ R  +    +TQF+    E  GLIK DFLGL+ LT++  +L+ 
Sbjct: 537 AAGVIMSSDPLIDIIPLMRREQDGQVITQFDYPTCEGLGLIKMDFLGLRNLTIISDALEN 596

Query: 589 LA--QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
           +A  + G  +DL  +P DD  +Y LL    TLG+FQL+   MRQ L+ M+PD  EDI A 
Sbjct: 597 IALNRDGFVLDLEHLPIDDPGSYELLARGDTLGVFQLDGGPMRQLLKLMRPDNFEDISAT 656

Query: 647 VSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQVMQIAQ 700
           ++LYRPGP+  ++   Y  RKNG ++I  IHP L +P+   L  T G+I+YQEQVM IAQ
Sbjct: 657 IALYRPGPMGANSHTNYALRKNGAQEITPIHPELAEPLEDILGTTYGLIVYQEQVMAIAQ 716

Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            ++GYSL +AD+LRRAMGKK K E+DKQ + F  G    G S+     ++++L  F+DY 
Sbjct: 717 KVAGYSLGQADILRRAMGKKKKAELDKQYQGFHQGMVDRGYSEAAIKALWDILLPFSDYA 776

Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
           FNK+H+AAY ++SY TA++K HYP E++AA +T   D+ +K+  +  + R   I ++PP 
Sbjct: 777 FNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLAMYLTECRHMGITVLPPD 836

Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNR 879
           VN   ++F      I + + A++ VG    + +++A  ++  F S  DF ++V +   N+
Sbjct: 837 VNESELNFTPVGTDIRFGMGAVRNVGANVVQAMVDARNEQGKFTSFNDFLAKVPAVVCNK 896

Query: 880 RVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
           R +ES++ AGA D  G++R  L+    Q+++++       +K + +  E  F       S
Sbjct: 897 RTIESMIKAGAFDQLGHTRRSLVMCHEQAVEDV-----VAQKKKEDNGEFTFDIFSMGGS 951

Query: 936 DKITLEKFSVENSSV-RFEN------EQRVLGFYFSGHPL 968
           +    E FSVE   V  +E       E+ +LG Y S HPL
Sbjct: 952 EDDEQETFSVEVPDVPEWERKDLLAFEREMLGLYVSDHPL 991


>gi|225163584|ref|ZP_03725893.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
 gi|224801819|gb|EEG20106.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
          Length = 1183

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 372/967 (38%), Positives = 549/967 (56%), Gaps = 59/967 (6%)

Query: 8   SPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           SPS F+HL VH+ YSLL+G+  ++ ++ +     Q AIA+TD  N+F A+ F  +A  AG
Sbjct: 3   SPSDFIHLHVHTDYSLLDGSCRVDRLMSRAKELGQTAIALTDHGNMFGAISFYNEAKKAG 62

Query: 67  IQPIIGCQLDIDMQDNLKMTNQ---GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
           I+P+IGC+  I     L+ T +   GK+ +     + +L    EGYQ L++LVS  +L  
Sbjct: 63  IKPLIGCEFYIAPGSRLEKTGKSEDGKSYY----HLGVLARNLEGYQNLLKLVSDAHL-- 116

Query: 124 QG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181
           +G     R  L  L    ++GLI  TG  +  + +    +  + A      + ++FG + 
Sbjct: 117 KGFYYKPRADLETLARY-SKGLIGFTGCLASEVCQNLMHDRFEDARAACARYVEIFGREN 175

Query: 182 LYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            +V +Q H G    R+    +++L     L ++ATN+  ++  ED   HD L+ +     
Sbjct: 176 YFVEIQDH-GIPEQRKIIPGLLKLGEEFGLKVIATNDVHYIRSEDANPHDALLCIQTGAK 234

Query: 240 VSQKDRPRV-TPDHYLKNRSEMVSIFS-DLPEALENTVEIARRC--SFILQVHAPILPRF 295
           +++++R +  T + YLK+R EM  IF  +LPE+L NT+ +A  C  S      +   PR+
Sbjct: 235 LAEENRMKFDTQEFYLKSRDEMFKIFGRELPESLTNTLAVAEMCDLSIPFPKGSERYPRY 294

Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQG--------------------AIAKGYHAQ 335
                   +      L    V GL+ R                        A  +     
Sbjct: 295 PLPAEIKARYSASQYLHQLCVEGLKHRYGHDHDPVALRPVVAERLAKLHNLAPGQKPAPP 354

Query: 336 DYRQ---------RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
           DY +         R+ +E  +I    F  YFL+V DFI WAK++ IPVGPGRGSGAG + 
Sbjct: 355 DYTELAPEEVLVLRMGYEQAIINVTGFVDYFLVVWDFINWAKQHTIPVGPGRGSGAGCLV 414

Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
           AY L IT+IDP+RF LLFERFLNP+R+S PDFDIDFC  RR+EVI YV+ KYG++ VA I
Sbjct: 415 AYLLGITNIDPIRFGLLFERFLNPERVSPPDFDIDFCMRRREEVINYVRQKYGNDCVANI 474

Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLAD 505
           IT+G+L AK A+RD+ R   + ++  DR+ K+IP +    +SL+ +I      R     +
Sbjct: 475 ITYGTLGAKMAIRDIARVHDLAFADADRISKMIPEEIG--ISLEDSIKKSEELRTEISRN 532

Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
           P   R+++ +  +EGL R+   HAAGI+I D+PL   VP+      D+ V QF+M  I K
Sbjct: 533 PMTKRIIDTALVVEGLVRNTGKHAAGIIITDQPLDDFVPLTSQ-EGDVTV-QFDMGAITK 590

Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLAQR--GVK-VDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            GL+K DFLGLKTLT++  ++D +     G K  D+  IP DD +TY LL    T+G+FQ
Sbjct: 591 LGLLKMDFLGLKTLTIISDAVDNVRHTVPGQKDFDIDTIPLDDPKTYELLNAGKTVGVFQ 650

Query: 623 LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
           LES GM+ A   +    ++DI A+ +LYRPGP+  I  Y   K     I   H L++P+L
Sbjct: 651 LESPGMQNASRQVGISTVDDINAISALYRPGPMQFIPDYARGKKDPANITYPHKLLEPVL 710

Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGI 741
           KET G+I+YQEQVM+ A++++GY+L  AD+LRRAMGKK  E M +++ +F+SGA + + I
Sbjct: 711 KETFGIIVYQEQVMECARVIAGYTLGGADMLRRAMGKKDAEAMAQERVKFVSGAKEHHNI 770

Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            +  A  IF+LL KFA YGFNKSH+AAYAV++YQTA++K +YPV+F+AA +T E+ N EK
Sbjct: 771 DEKKANEIFDLLNKFAQYGFNKSHSAAYAVVAYQTAYLKANYPVQFMAAVLTAELGNAEK 830

Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADK 860
           +  F  +A    + ++ P +N    +F    ++I + LA IKGVG   ++ I+ E  A+ 
Sbjct: 831 VAHFIAEAEAMGLTVLGPDINESGANFTPVGDKIRFGLAGIKGVGEGASQKIIAEREANG 890

Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
           P+   +DF  RVD+K  N+RVLE L   GA D  G SR  +   +D     A    K+R 
Sbjct: 891 PYKDFDDFTLRVDNKSANKRVLEHLAKTGAFDFSGESRKAIFARVDAALASAVLQAKDRA 950

Query: 921 NKHENIF 927
                 F
Sbjct: 951 AGQSGFF 957


>gi|260906536|ref|ZP_05914858.1| DNA polymerase III subunit alpha [Brevibacterium linens BL2]
          Length = 1185

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 390/1076 (36%), Positives = 580/1076 (53%), Gaps = 73/1076 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YS+L+GA  L +++    A    AIA TD   LF A +F  +A AAGI+PI
Sbjct: 6    FVHLHVHTEYSMLDGAARLTDLMAATKASGMSAIATTDHGYLFGAFDFWSQATAAGIKPI 65

Query: 71   IGCQLDI----DMQDNLKM---TNQGK-----TPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            IG +  +    D +D  ++   T++ +     +       + LL     G + L +  S 
Sbjct: 66   IGVEAYVTPGTDRRDKTRVKWRTDESQKRDDLSGGGAYTHMTLLSRNNTGMRNLFKASSY 125

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L     +  RI    L E  +EGLI  TG  SG I         + A      ++++F
Sbjct: 126  ASLDSVFSKWPRIDQDLL-ETYSEGLIATTGCPSGEIQVRLRLGQYEEARAAAGKYREMF 184

Query: 179  G-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            G D  YV L  H    ++     +++L+   ++PLVATN+  +  E D +AH+ L+A+  
Sbjct: 185  GKDNYYVELMDHGLSIEKRVTKDLIRLSKEMDIPLVATNDLHYTHESDAKAHEALLAIQS 244

Query: 237  STVVSQKDRPR-------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + + +    +           +YLK+ +EM ++FS+ PEA +NT+EIA +C       A
Sbjct: 245  GSKLIEPTYDQGGSRFAFSGSGYYLKSGAEMRALFSEFPEACDNTLEIAEKCEVSFDTSA 304

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +P+F     +D    E + L  +   GLE R   G         D R++ D+EL+VI 
Sbjct: 305  NYMPKFPCPPGED----ETSWLVKEVQTGLEYRYPGGI------PDDVRKQADYELDVII 354

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M F GYFL+VADFI W+K N I VGPGRGSGAGS+ AYA+ ITD+DPL+  L FERFLN
Sbjct: 355  SMGFPGYFLVVADFINWSKDNGIRVGPGRGSGAGSMVAYAMRITDLDPLKHGLFFERFLN 414

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            PDR+SMPDFD+DF   RR EVI YV  KYG ERVA I+T+G+++ K AL+D  R L  P+
Sbjct: 415  PDRVSMPDFDVDFDDRRRGEVIDYVTRKYGDERVAMIVTYGTIKTKMALKDSARVLGKPF 474

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIAD-----------DSRFREARLADPSVDRLLEISQKL 518
            S  +RL K +P  PA       +AD              FRE   +DP      E ++ +
Sbjct: 475  SMGERLTKALP--PAEMAKDIPLADIENAESKRYNEAGEFREFVDSDPDARETFETAKGI 532

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R    HAAG+++   P+  ++P+ R  +    +TQF+    E  GLIK DFLGL+ 
Sbjct: 533  EGLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFLGLRN 592

Query: 579  LTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  +++ + A R   + L  +  DD   Y LL+   TLG+FQL+  G+R  L  M+P
Sbjct: 593  LTIISDAVENIKANRDYDLGLEHLDLDDRGAYDLLSRGDTLGVFQLDGGGLRALLRLMKP 652

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIY 691
            D  EDI A ++LYRPGP+  D+   +  RKNG +++  IHP L +P+   L  T G+IIY
Sbjct: 653  DNFEDISATIALYRPGPMGADSHTNFALRKNGLQEVTPIHPELEEPLEDILGTTYGLIIY 712

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVM IAQ ++GYSL +AD+LRRAMGKK K E+DKQ+  F  G  + G S+  A  +++
Sbjct: 713  QEQVMAIAQKVAGYSLGQADILRRAMGKKKKSELDKQQVGFFGGMKERGYSEAAAQALWD 772

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +L  F+DY FNK+H+AAY ++SY TA++K HY  E++AA +T   DN +K+  +  + R+
Sbjct: 773  ILLPFSDYAFNKAHSAAYGLVSYWTAFLKAHYTAEYMAALLTSVGDNKDKLAIYLNECRR 832

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCS 870
              I ++PP VN   + F      I + + A++ VG      I+EA  +K  + S  DF  
Sbjct: 833  LGITVLPPDVNDSALHFTPVGEDIRFGMGAVRNVGANVVDGIVEARGEKGAYTSFTDFLD 892

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +V S   N+R +ESL+ AG  D  G +R  L++  +        V++   N   ++FA  
Sbjct: 893  KVPSHVCNKRTIESLIKAGGFDSLGQTRRSLVEVHEEAVDSVIGVKRQEANGQFDLFAGL 952

Query: 931  KG-----TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
             G     +FS  I       +   + FE +  ++G Y S HPL+  + +L        E 
Sbjct: 953  GGDDDEPSFSVAIPDRPEWEKKEKLAFERD--MIGLYVSDHPLNGLEGVLAAES----EA 1006

Query: 986  SVATI--------RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
            S+A +         G+ +++  M+    +K ++  G     VT  +   E E  FF
Sbjct: 1007 SIAEVVDPESHRHDGSQVKICGMITQVSRKVSKNSGKPYAIVTVEDLNAEVEVMFF 1062


>gi|283780088|ref|YP_003370843.1| DNA polymerase III subunit alpha [Pirellula staleyi DSM 6068]
 gi|283438541|gb|ADB16983.1| DNA polymerase III, alpha subunit [Pirellula staleyi DSM 6068]
          Length = 1192

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 372/991 (37%), Positives = 566/991 (57%), Gaps = 40/991 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL  HS YSLL+GA S+  +L +       A+A+TD  NL  ALEF  KA A GI PI
Sbjct: 6   FVHLHCHSHYSLLDGASSVPKLLKRAKEHGMSALALTDHGNLHGALEFYNKAKALGINPI 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  I      +  +   +   +   + LL    +G++ LI+L S   L +      R
Sbjct: 66  IGYEAYIAPGSRFEKKDAANSKEASY-HLTLLAQNRQGFKNLIKLASAASL-EGFYYKPR 123

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-----QVAEKRLLTFKKLFGDRLYVN 185
           I    LQ   +EG+I L+G  S     A           + A++    F K+FGDR ++ 
Sbjct: 124 IDKEILQA-HSEGIICLSGCVSSEFSNAVLRGHGGDKELKDAQEIAGWFHKVFGDRYFLE 182

Query: 186 LQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
           +  + G D  R++    V +A    LPLVAT+++ +   ED EA DVL+ V      +  
Sbjct: 183 IMNN-GIDIQRFQLEGAVDVAKKMGLPLVATSDAHYAYAEDAEAQDVLLCVNTGKFRTDT 241

Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILPRFIEKE 299
           +R ++     YL++  EM   F  L +A+  + EIA      L++   H P+ P   EK 
Sbjct: 242 NRMKMENGSFYLRSAEEMYEHFHGLEDAVARSQEIADSVHIDLELGKRHFPVYPIPPEKT 301

Query: 300 CDDIQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            +D        LR   V GL+ R A  +  +  G  ++    RL+ ELNVI ++ F  YF
Sbjct: 302 AEDY-------LRELCVQGLKERYAGDEEMLPGGELSEVVVARLERELNVINKLGFPNYF 354

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           LIV DF++ A++ ++P    RGSG G++  +AL ++ + P+++ LLFERFL+ +R   PD
Sbjct: 355 LIVWDFVRHAREQDVPA-TARGSGVGALVCFALYLSHVCPIKYDLLFERFLDLNRKEAPD 413

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            DIDFC+DRR ++IRYV++KYG   VAQI TFG+L A+AA++DVGR L +P  +V+++  
Sbjct: 414 IDIDFCKDRRGDIIRYVKDKYGESNVAQIGTFGTLAARAAIKDVGRVLGIPMERVNKVTA 473

Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
           ++P D  H     A+      +     DP V  +L+++ ++EGL R+  THAA +VI D+
Sbjct: 474 MVP-DELHIHLSDALEKSDELKAVYNGDPDVREMLDLAMRIEGLARNVGTHAAAVVIADK 532

Query: 538 PLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVK 595
           PL++ VP+ R   +SD+ +TQ++M  +E AGL+K DFLGL+ LT+L K+++ + Q  G +
Sbjct: 533 PLTEYVPLGRVGGKSDI-ITQWSMGDVEAAGLLKMDFLGLRNLTILSKAVEIIQQTTGKR 591

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
           VD    P DD  T+ LL    T GIFQLES G+R  L+ M+PD   DIIA  +LYRPGP+
Sbjct: 592 VDPYKFPLDDKRTFALLQRGETKGIFQLESGGIRDLLQKMKPDHFRDIIATNALYRPGPL 651

Query: 656 DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
           +  +V  Y   K+G+++   IHP+ + +L ET GV++YQEQVM+I   L G  L+ +  +
Sbjct: 652 EGGMVADYVAVKHGRKQAEYIHPVCEKILSETNGVMVYQEQVMRILNELGGIELAASYTV 711

Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            +A+ KK ++ ++K K +F+ GA + GI++  A + + L+ KFA YGFNKSH+ AYA+I+
Sbjct: 712 IKAISKKKEDLINKNKVQFLKGAVEKGITEKQADDFWNLIIKFAGYGFNKSHSTAYALIA 771

Query: 774 YQTAWMKTHYPVEFLAASMTLEMDN-----VEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
           Y TA++K HYPVEF+AA ++ ++        + + +  +D  +  I + PP+VN   VDF
Sbjct: 772 YMTAYLKAHYPVEFMAALLSGDIQGRNFKTKDSLVEHLEDCTRMGITVQPPNVNESNVDF 831

Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D +I + L+AIKG G +    I+ A +   PF  L DFC RVD+   ++  +E+L+ 
Sbjct: 832 AVKDGKILFGLSAIKGCGGSAGESIVAARTKGGPFRDLFDFCERVDATGSSKGTIETLIK 891

Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFS 944
           AGA DCFG  R Q    ++   +  Q V  +R +  +N+F     E+ + +   TL    
Sbjct: 892 AGAFDCFGARRSQQFAIVERAIQSGQSVAADRKSGQKNLFGAFEEEEPSKAKSTTLPDVP 951

Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
              S      E+ VLGFY S HPLD +K  L
Sbjct: 952 ELASKEMATQEKEVLGFYLSSHPLDEHKRTL 982


>gi|254442121|ref|ZP_05055597.1| DNA polymerase III, alpha subunit subfamily, putative
            [Verrucomicrobiae bacterium DG1235]
 gi|198256429|gb|EDY80737.1| DNA polymerase III, alpha subunit subfamily, putative
            [Verrucomicrobiae bacterium DG1235]
          Length = 1259

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 389/1107 (35%), Positives = 602/1107 (54%), Gaps = 108/1107 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YSLL+G         +      PA+A+TD  NLF A++F +     GI+P+
Sbjct: 9    FVHLHNHTHYSLLDGCAKPLRAAQRCLELGMPALAMTDHGNLFGAIDFYRSCKKVGIKPL 68

Query: 71   IGCQL---------DIDMQDNLKMTNQGKTPFPTVPSIV-----------LLVSTAEGYQ 110
            IGC+L         +   ++  +  + G  P   VP              ++    EGYQ
Sbjct: 69   IGCELYYVNDHKQSERPRRERKRTDDIGDIPEHYVPPKEDFPKYQIHHKGVIAKNFEGYQ 128

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L +LVS  ++ +      R  +  L +  ++GLI L+G  +G   +   +   + A K 
Sbjct: 129  NLCKLVSDAHI-NGVYYKPRADIETLAKY-SKGLIGLSGCINGVAAQYLIYGDEENARKA 186

Query: 171  LLTFKKLFG-DRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              TF  +FG +  ++ +Q H G    R     +++LA   +L ++  N+S ++ +ED   
Sbjct: 187  TATFVDIFGKENYFIEIQDH-GMPVQRRIIPGLLKLAKEFDLKVICANDSHYVYKEDANP 245

Query: 228  HDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL- 285
            HD L+ +    ++  ++R +  + + YLK+R EM  IF ++PE+L+NTV +A      + 
Sbjct: 246  HDALLCIQTGKIIEDENRMKYPSQEFYLKSRQEMYEIFKEVPESLDNTVHVAEMVDLEIP 305

Query: 286  --QVHAPIL---PRFIEKECDD----------------------------IQKEEENELR 312
              + H P+    P    K  DD                              +E  N  +
Sbjct: 306  FDEDHYPVFECPPELGYKSDDDAFDRILDIYELEKTKVNKQNGDDTVCKLTAEERANHKK 365

Query: 313  NKAV------AGLEVRLA------QGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGY 356
            N  V       GL+ R           + K    +D+ +    ++DF+L +I    F  Y
Sbjct: 366  NGFVLLDLCKKGLKERYGVDYDDRASYVPKEGEREDFAEFVCDQMDFQLAIITGTGFVDY 425

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV DFI +A+   IPVGPGRGSGAG + AY L ITDIDPLRF LLFER LN +R+S P
Sbjct: 426  FLIVWDFINFARSQGIPVGPGRGSGAGCIIAYVLKITDIDPLRFGLLFERMLNLERVSPP 485

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC  RRD V+ YV+ KYGH+ VA IITFG+  AK  +RD+ R   + +++ D++ 
Sbjct: 486  DFDIDFCMRRRDVVVNYVREKYGHDSVANIITFGTFGAKMIVRDLARVNNLQFAEADKIA 545

Query: 477  KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K+IP++    +SL  ++   S  R     +P   +++E  + +EG+ R+   HA GI+IG
Sbjct: 546  KMIPDELN--ISLDDSVEKSSDLRNEIAVNPVAKKIVEHGKVIEGMVRNTGKHACGIIIG 603

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGV 594
            D+P+  LVP+      DL  TQ+     E  GL+K DFLGLKTLT++  + D + A R +
Sbjct: 604  DQPIHNLVPVTLQ-EGDL-TTQYPKGPSEDLGLLKMDFLGLKTLTVISDAQDNIQATRNL 661

Query: 595  -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
               D+  +  +D +TY LL    T+G+FQLES GM+   + +     E+IIAL++LYRPG
Sbjct: 662  PDFDIEKVTLEDPKTYDLLNAGNTVGVFQLESGGMQNLCKQIGLSVFEEIIALIALYRPG 721

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+  I  +   K   +KI   HPL++ ++ ET GV++YQEQVM+ A++++GY+L  AD+L
Sbjct: 722  PMQFIPQFIEGKRDPKKIQIPHPLLEELVSETYGVLVYQEQVMESARIIAGYTLGGADML 781

Query: 714  RRAMGKKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAMGKKI   M+ QK+ F+ GA + +GI +  A+NIF +L KFA YGFNKSH+AAYA++
Sbjct: 782  RRAMGKKIASVMEAQKQIFVDGAKATHGIKEKEALNIFAILEKFAQYGFNKSHSAAYAML 841

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TPCV 826
            SY+TA++K +YPVEF+AA ++ E+ N +K+  F  +A    I+++ P +N      TP +
Sbjct: 842  SYRTAYLKANYPVEFMAALLSAELGNADKVSHFIDEANSMGIRVLSPDINKSKEMFTPVI 901

Query: 827  DFK--VGDNR---IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRR 880
            D +  + D +   I + + A+KGVG + A+ I+ E  A+ P++ +++   RVD+K +N+R
Sbjct: 902  DSEEDIADGKLGSIVFGMGAVKGVGDSAAKTIIAERDANGPYEGMDELLERVDTKSVNKR 961

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSD 936
            VLE+L+  GA D  G  R  L   L+     A   ++++    E+ F       K   + 
Sbjct: 962  VLENLIKTGAFDFTGEPRGSLFHRLEGAMNQAAEAQRDKERGQESFFDMIVEEPKEKDAP 1021

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            +  L K   +   +R+E E  +LGFY SGHPLD YK I     +  ++ S     G+ + 
Sbjct: 1022 QWDLSKQFTKTEMLRYEKE--LLGFYVSGHPLDEYKGIAE--ALTNFDLSKVDQLGDKVE 1077

Query: 997  LAAMVVSKQ--QKKTRKGSRIGWVTFS 1021
              A  V+    +K +RK +R  W  FS
Sbjct: 1078 FQACGVAGGVVKKLSRKDNR-PWAFFS 1103


>gi|29839841|ref|NP_828947.1| DNA polymerase III subunit alpha [Chlamydophila caviae GPIC]
 gi|29834188|gb|AAP04825.1| DNA polymerase III, alpha subunit [Chlamydophila caviae GPIC]
          Length = 1242

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 373/1078 (34%), Positives = 592/1078 (54%), Gaps = 62/1078 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+ + + K    Q P++A+TD  NL+ A+EF ++     I+P
Sbjct: 2    TWIPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECRQNDIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +          + K+       ++LL    +GY+ L  L+S +   +      
Sbjct: 62   IIGCEIYVAPTSRFDKKKERKSRVAN--HLILLCKNEQGYRNLC-LLSSLAFTEGFYYFP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +  +EGL+ L+   SG + +A    S +  EK LL ++ LFGD  Y  +Q H
Sbjct: 119  RIDRELLSQ-HSEGLVCLSACLSGSVAQAAL-ESEEALEKDLLWYQNLFGDDFYSEIQLH 176

Query: 190  R----------------GYDRYRESQV----VQLAYTHELPL--VATNNSLFLSEEDYEA 227
            +                 Y ++ E+Q+      LA +  L +  VATN+  ++   D+ A
Sbjct: 177  KMSEEKIASLGEEWLKHEYHQFIEAQIKVNQAVLATSRRLGIRSVATNDIHYIHPNDWLA 236

Query: 228  HDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+ V           ++ + + K +   + ++Y K+  EM  +F+D PE + NT+E+
Sbjct: 237  HEILLNVQIGETIRIAKQNTYIPNPKRKAFRSREYYFKSPEEMALLFADHPETISNTLEV 296

Query: 278  ARRCSFILQV---HAPI-LPRFIEKECDDIQKEEENE-----LRNKAVAGLEVRLAQ--- 325
            A +C+  L +   H PI +P F+ KE     +EE        LR     GL  +      
Sbjct: 297  ADKCNLSLNLSSKHYPIYVPEFL-KEKQTYTEEERYAASSTFLRELCEQGLFTKYTAEQL 355

Query: 326  GAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
              I+K +  +D     ++RL+ E+++I       Y LIV D I+WAK N IPVGPGRGSG
Sbjct: 356  AHISKKFPDRDPLELVKERLEMEMSIIIPKGMCDYLLIVWDIIRWAKDNGIPVGPGRGSG 415

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            AGSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G +
Sbjct: 416  AGSVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKD 475

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
             VAQIITFG+++AK A++DVGR L +P S+V+ + K IP    +    +A+  D    E 
Sbjct: 476  NVAQIITFGTMKAKMAVKDVGRTLDVPLSKVNHIAKHIPE--MNTTLAKALETDPHLNEL 533

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
               D    ++L+++  LEG  R+   HAAG++I    L+  +P+     S +  TQF+MK
Sbjct: 534  YTNDSEAAQVLDMAMHLEGSIRNTGVHAAGVIICGDHLTNHIPICISKDSTMITTQFSMK 593

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620
             +E  G++K DFLGLKTLT +  ++  + ++ G  ++++ +P DD  T+ LL    T+GI
Sbjct: 594  PVESVGMLKVDFLGLKTLTSIHIAIQAIQKKTGKLLEMASLPLDDKTTFALLHQGKTMGI 653

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ+ES GM++  + + PD  E+IIA+ +LYRPGP+D I  + +RK+GKE I   HPL++ 
Sbjct: 654  FQMESKGMQELAKNLCPDSFEEIIAIGALYRPGPMDMIPSFISRKHGKEIIEYDHPLMES 713

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  ++M +++ +F   A KNG
Sbjct: 714  ILKETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDIQQMLQERTKFCERACKNG 773

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            I   +A  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E
Sbjct: 774  IDADLATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDSDDIE 833

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
            K+ K   +A   +I I+PP +N    +F   D  I +++ AI+G+G      I+E     
Sbjct: 834  KVGKLIHEAHSMDICILPPDINESGTNFVATDKGIRFAMGAIRGIGKGLVESIVEEREKH 893

Query: 861  -PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P+ S++DF  R D KK+ ++  E+L+ AG  D F   R     +L+ +       +K  
Sbjct: 894  GPYQSIQDFIQRSDLKKVTKKHTENLIDAGCFDVFESDRDVAQATLETLYDTISKEKKEA 953

Query: 920  TNKHENIFAHEKGTFSDKITLEKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                   F+        ++ L   +     +     + E+ +LG Y + HP+D  K IL 
Sbjct: 954  ATGVMTFFSLNTMHQEHRVALPPATNVVRRSKKEILKKEKELLGIYLTEHPMDAVKDILP 1013

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033
            ++ +    E      G+ IR   ++     + + KG R    +  ++    YE   +P
Sbjct: 1014 QLSVVNSGEFENLPHGSVIRTIFIIDKVTTRISSKGQRKFALLRVNDGVDSYELPIWP 1071


>gi|110597394|ref|ZP_01385681.1| DNA polymerase III, alpha subunit [Chlorobium ferrooxidans DSM 13031]
 gi|110340938|gb|EAT59409.1| DNA polymerase III, alpha subunit [Chlorobium ferrooxidans DSM 13031]
          Length = 1191

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 370/1014 (36%), Positives = 566/1014 (55%), Gaps = 65/1014 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YS+    +    +    A     ++A+TD   +F+  E   +A  AGI+ I
Sbjct: 3    FVHLHAHTHYSMQSSPIFPGELFSAAAGFGMKSVAVTDYCAIFNMPELFYEAKNAGIKLI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +L +     L+      +  PT PS+VLLV    GY+ L  L+SR    D     + 
Sbjct: 63   IGSELLL-----LESDTHQHSRIPTSPSLVLLVQNDTGYRNLCILLSRA-AKDGFVNGMP 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               S L E   +GL+ L+  SSG I RA    +   AE     ++++FGD  Y+ LQ+H+
Sbjct: 117  HIESRLLEHYHDGLVCLSAYSSGRIGRALLAGAIDEAETFAAYYQEIFGDNFYLELQQHQ 176

Query: 191  G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQKDRPRV 248
              +D     + + LA    + LVATNN  +L  +D   +  ++A      + SQ  +   
Sbjct: 177  APFDEKLNRETIALAEKLSIELVATNNVHYLERKDAGCYRAMVANRTKEKLSSQNLQALA 236

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              DHYLK+  EM  +FSD    L N++ IA +C++      P+LP F   E     ++E 
Sbjct: 237  GSDHYLKSSDEMSRLFSDEHRELSNSLLIAEKCTYTFCQKEPVLPHFPLPEG---FQDEF 293

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L +    G + + A    A+G   ++ + R++ EL VI +M FS YFLIV+D I  ++
Sbjct: 294  TYLSHLTWEGAKEKYADSE-AEGISKEEVKSRIELELGVIEKMGFSSYFLIVSDLIAASR 352

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                 VGPGRGS AGS+ AY   IT IDPLR+ LLFERFLNP+R SMPD DIDF    + 
Sbjct: 353  TLGYSVGPGRGSAAGSIVAYLTGITRIDPLRYKLLFERFLNPERSSMPDIDIDFTPVGKQ 412

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +V+ Y   KYG E VA++I  G+L AKAA+RD GR L++P   VD+L KL+P  P   ++
Sbjct: 413  KVLEYTVEKYGTESVAKVIAIGTLGAKAAIRDAGRVLEVPLPLVDKLAKLVPTKPG--IT 470

Query: 489  LQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY- 546
            L+ A+ + +  ++   + P +  L+  ++ LEG  R+ S HA  +VI   PL + VP+Y 
Sbjct: 471  LEKALHESNELKQFSESSPEIRELVRYARALEGRARNVSMHAGAVVITSGPLEEQVPLYV 530

Query: 547  -----RDVRS-------DLP----------------VTQFNMKWIEKAGLIKFDFLGLKT 578
                  +VR        D P                VTQF+  WIE AGL+K D+LGL+T
Sbjct: 531  SNKIETEVRKFADEIDLDEPGPGSMKGSDGVDEKQLVTQFDKNWIETAGLLKIDYLGLET 590

Query: 579  LTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            L ++ ++L  + +R  + ++L  +P +D +T+ +       GIFQ ESSGM+  +  +QP
Sbjct: 591  LAVIDETLRMIKRRYDLDIELEKVPMNDRKTFKIFQEGKMAGIFQFESSGMQSYMTRLQP 650

Query: 638  DCIEDIIALVSLYRPGPID-------NIV-VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
              I DIIA+ +LYRPG ++       N V ++ +RK+G+E I  +HP+++ +LKET GVI
Sbjct: 651  TQIGDIIAMSALYRPGALNARIDEKRNAVDLFVDRKHGREAIDYMHPMLEEILKETYGVI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI+Q++ G+SL++AD LR+AMGKK+ E M+K K  F+ GA   G+  T+A  +
Sbjct: 711  VYQEQVMQISQVMGGFSLAKADNLRKAMGKKMPEIMEKYKADFVQGAIAQGVHDTLATRV 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            FEL+A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A +  E+ + E++K    +A
Sbjct: 771  FELMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFMTAVLNSEIGDTERMKHLTDEA 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDN------RIYYSLAAIKGVGTTTARHIMEASA--DKP 861
            + F I  +PPS+N     F V D+       I   L+AIK VG   AR ++ +     + 
Sbjct: 831  KSFGISTLPPSINKSDALFSVEDSDDGRSCSIRVGLSAIKQVG-GAARAVVTSKLRRKRD 889

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F +L D  + VD + +NR+ LE L+ AGA D     R +L+ ++D   K+ Q   ++ T 
Sbjct: 890  FQNLFDLAASVDLRVMNRKALECLILAGAFDEIDQHRARLIANVDKAIKFGQMQNRSVTL 949

Query: 922  KHENIFAHEKGTFSDKI---TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
                 F  E+G   ++     +++      + +  +E++++GFY S HPL  Y+
Sbjct: 950  GQCGFFTAEEGALLEEEHYPDMDQAEPMAEAEKLLHEKKLVGFYLSHHPLSPYR 1003


>gi|320531635|ref|ZP_08032577.1| DNA polymerase III subunit alpha [Actinomyces sp. oral taxon 171 str.
            F0337]
 gi|320136164|gb|EFW28170.1| DNA polymerase III subunit alpha [Actinomyces sp. oral taxon 171 str.
            F0337]
          Length = 1197

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 373/1077 (34%), Positives = 585/1077 (54%), Gaps = 70/1077 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YS+L+GA  + + + +     QPA+AITD   +F A EF   A AAGI+PI
Sbjct: 16   FVHLHVHTDYSMLDGAGKIKDYVAEAKRLGQPALAITDHGYMFGAYEFYAAATAAGIKPI 75

Query: 71   IGCQLDI----------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            IG +  +                + Q +  ++ +G     +   + LL    EG   L+ 
Sbjct: 76   IGVEAYMTPGTSRFDKTRVFWGDESQRSDDVSARG-----SYTHMTLLSRNNEGLHNLMR 130

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            + S   L  Q  ++ RI    L    + GLI  TG  S  +           A +     
Sbjct: 131  MDSFASLEGQWGKAPRIDRELLSRY-SGGLIGSTGCPSSEVQTRLRLGQWDEALRTAGEL 189

Query: 175  KKLFGDRL-YVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG    YV L  H      R ++ +++LA     PL+ATN+S ++  ED    D ++
Sbjct: 190  QDIFGKEFFYVELMDHGLEIEQRVTKDLLRLAQEIGAPLLATNDSHYVRPEDRTIQDAML 249

Query: 233  AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---H 288
             +   +V+S  DR R   D +YL+  SEM  +FS++P+A +NT+ +A +C    +     
Sbjct: 250  CINSGSVLSDPDRFRFDGDTYYLRPGSEMRRLFSEMPQACDNTLLVAEQCDVHFRTVDEG 309

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
            A  +P F   E +     +E+    +   G++ R        G   +D R++ ++E++VI
Sbjct: 310  ASFMPAFPVPEGE----TDESWFIKECWRGMDHRF------NGDIPEDCRKQAEYEISVI 359

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VAD+I WAK + I VGPGRGSGAGS+ AYA+ IT+++PLR  L+FERFL
Sbjct: 360  TQMGFPGYFLVVADYINWAKAHGIRVGPGRGSGAGSMVAYAMGITELNPLRHGLIFERFL 419

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DF + RRDEVI YV+ KYG +R++Q++T+G ++AK +L+D  R +  P
Sbjct: 420  NPERISMPDIDVDFDERRRDEVIEYVREKYGADRISQVVTYGVIKAKQSLKDSSRVMGYP 479

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAI--ADDSR------FREARLADPSVDRLLEISQKLE 519
            Y+  DRL K +P       +S++ I   DD R      FR+    DP   +++E+++ LE
Sbjct: 480  YAVGDRLTKAMPPSVQGKDISIKGIFNPDDERYGEAEEFRKLHAEDPDAQKIVELAKGLE 539

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R    HA  +++    L+ ++PM + ++    +TQF+    E  GL+K DFLGL+ L
Sbjct: 540  GMTRQWGVHACAVIMSSATLTDIIPMMQRLQDGAVITQFDYPTCEHLGLLKMDFLGLRNL 599

Query: 580  TLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +L+ +   G   +D+  +  DD  TY LL+   TLG+FQL+  GMR  L  M+PD
Sbjct: 600  TVISDALENIVANGKPALDIDHVELDDRATYELLSRGETLGVFQLDGGGMRTLLRLMKPD 659

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVIIYQ 692
              EDI A+ +LYRPGP+  ++   Y  RKNG +++V IHP     +DP+L  T G+I+YQ
Sbjct: 660  NFEDISAVGALYRPGPMGAESHTNYALRKNGLQEVVPIHPELKDALDPILGTTHGLIVYQ 719

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM+IA  L+G+S+ +AD LR+AMGKK  + + K    F +G  + G SK     ++++
Sbjct: 720  EQVMKIATDLAGFSMGKADALRKAMGKKKMDILAKMFVEFEAGMVQAGFSKESVKTLWDV 779

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA Y FNK+H+AAY V+SY TA++K HYP E++AA +T + DN +K+  +  + R  
Sbjct: 780  VVPFAKYAFNKAHSAAYGVVSYWTAYLKAHYPTEYMAALLTSQKDNKDKLAVYLGECRHM 839

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSR 871
             I ++PP VN     F   D  + + L+A++ VG      I+ A  +K  F S EDF  +
Sbjct: 840  GITVLPPDVNASRAQFSAVDEDVRFGLSAVRNVGINVVDAIVAAREEKGEFTSFEDFLDK 899

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V +   N+R ++SL+ AGA D  G++R  L    ++       V++N      ++FA   
Sbjct: 900  VPAVVCNKRTIDSLIKAGAFDSLGHTRRSLQACHEDFVDEVIGVKRNEAAGQFDLFASLV 959

Query: 932  G--TFSDKITLEKFSVENSSV----------RFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            G    +D        V +S V          +   E+ +LG Y S HPL   + +L K+ 
Sbjct: 960  GGPDDADDSPFGNGPVFSSDVPNLPEWDKKDKLAYERDMLGLYVSDHPLMGLEGLLGKLA 1019

Query: 980  ---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               I    E+     G  + +A ++ S  +K T++G+        + A   E  FFP
Sbjct: 1020 DKEISELHENDELPDGAMVTIAGLITSLTRKTTKQGNLWAIAQVEDLAGSVEVLFFP 1076


>gi|309812629|ref|ZP_07706373.1| putative DNA polymerase III subunit alpha [Dermacoccus sp. Ellin185]
 gi|308433324|gb|EFP57212.1| putative DNA polymerase III subunit alpha [Dermacoccus sp. Ellin185]
          Length = 1182

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 389/1083 (35%), Positives = 576/1083 (53%), Gaps = 80/1083 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            +S SFVHL  H+ YS+L+GA  ++++  +      PAIA TD   LF A EF  K+    
Sbjct: 4    QSKSFVHLHNHTEYSMLDGAARIDDMFARAQEFGMPAIATTDHGYLFGAYEFWSKSRKYD 63

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPT-------------VPSIVLLVSTAEGYQRLI 113
            ++PIIG  L+  M      T++ +T +                  + LL    EG   L 
Sbjct: 64   VKPIIG--LEAYMTPGTHRTDKTRTTWGERGQEADDVSNRGLYTHMTLLAKNNEGMHNLF 121

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             + S+  L     +  R+    L   GT G+I  TG  SG I           A +    
Sbjct: 122  RMGSQASLDQVYSKYPRLDRELLNAYGT-GIIGTTGCPSGEIQTRLRLGQYDKAREAAAE 180

Query: 174  FKKLFGD-RLYVNLQRHR---GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            F+ +FGD   Y  L  H      +R   S +++LA    LPL+ATN+  + ++ED   HD
Sbjct: 181  FRDIFGDGNFYCELMEHDLDVDIERRVRSDLLKLAKDLNLPLLATNDLHYTNKEDAVHHD 240

Query: 230  VLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF-ILQV 287
             L+ +   + ++  +R +  + + YLK+  EM  +F D P+A +NT+ IA +C     + 
Sbjct: 241  ALLCINSGSRLTDPNRFKFGSHEFYLKSADEMRHLFRDHPDACDNTLLIAEQCEVSFTEG 300

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR-QRLDFELN 346
                +PRF   E +D    E +    +   GL  R  +G         DY  ++  +E +
Sbjct: 301  EGRYMPRFPCPEGED----ETSWFIKEVETGLRRRFPEGV-------PDYAVKQAKYEQD 349

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI    + GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD+DP+   L+FER
Sbjct: 350  VIIGKGYPGYFLVVADFINWAKRNGIRVGPGRGSGAGSMCAYAMGITDLDPVPHGLIFER 409

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R SMPDFD+DF + RR EVIRYV +KYG +RV+ I+T+G+++AK A++D  R + 
Sbjct: 410  FLNPERQSMPDFDVDFDERRRSEVIRYVVDKYGEDRVSYIVTYGTIKAKQAVKDASRVMD 469

Query: 467  MPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLADPSVDRLLEISQK 517
             P++  +++ K +P D     V L  + D+S         FRE   +DP+   + +    
Sbjct: 470  FPFAIGEQMTKAMPADVMGKGVPLAKMYDESHPRYAEGGEFRELIASDPTFKNIFDAGVG 529

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R    HAAG+++   PL  ++P+ R ++    +TQF+    E  GL+K DFLGL+
Sbjct: 530  LEGLKRQWGVHAAGVIMSSEPLIDVIPIMRRLQDGAVITQFDYPSCETLGLVKMDFLGLR 589

Query: 578  TLTLLQKSL-DFLAQRGVKVDLSLIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEG 634
             LT+L  +L +  A R   +DL  +  D  D +TY LL    TLG+FQL+  GMRQ L  
Sbjct: 590  NLTILDDALKNIKANRDEDIDLDALSKDMTDAKTYDLLARGDTLGVFQLDGGGMRQLLRL 649

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNN--RKNGKEKIVSIHP----LIDPMLKETQGV 688
            MQPD  EDI A ++LYRPGP+      N   RKNGK++I  IHP     ++P+L  T G+
Sbjct: 650  MQPDNFEDISAALALYRPGPMGANAHTNFALRKNGKQQIDYIHPELTEALEPILNMTYGL 709

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            IIYQEQVM+IAQ L+GY+L  AD+LRRAMGKK KE +D +   F  G   NG SK     
Sbjct: 710  IIYQEQVMEIAQKLAGYTLGNADLLRRAMGKKKKEVLDAEYVNFEKGMLDNGFSKESVQT 769

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++ +L  F+DY FNK+H AAY ++SY T ++K +YP E++AA +T   D+ +K   +  +
Sbjct: 770  LWSILLPFSDYAFNKAHTAAYGLVSYWTGYLKANYPAEYMAALLTSVRDDKDKSALYLNE 829

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLED 867
             R   I+++PP VN    +F      I + L AI+ VG+     I+ A  +K  F S ED
Sbjct: 830  CRHMGIKVLPPDVNESIGNFAAVGEDIRFGLEAIRNVGSNVVAAIIAAREEKGRFTSFED 889

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH--EN 925
            F  +  +  LN+R +ESLV AGA D  G+ R  L+Q  ++       +++ R  +H  ++
Sbjct: 890  FLRKCPATVLNKRTVESLVKAGAFDDLGHQRQGLVQIHESYVD--ALIDEKRKEEHGQDS 947

Query: 926  IFAHEKGTFSDKITLEKFSV--------ENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
            +FA     F D     +F+          +   +   E+ +LG Y S HPL   +  L +
Sbjct: 948  LFA----GFGDDAPGIEFAALPQIPPIEWDKQTKLAFEREMLGLYVSDHPLFGIEAALAQ 1003

Query: 978  MGIKGYEESVATI-------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                  + SVA +        G  + +A ++   Q K+T+KG      T  +     E  
Sbjct: 1004 FS----DTSVARLLAEDALPDGATVTIAGLITGLQIKRTKKGDLWAIATVEDMDGAIECL 1059

Query: 1031 FFP 1033
            FFP
Sbjct: 1060 FFP 1062


>gi|269219520|ref|ZP_06163374.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 848
            str. F0332]
 gi|269211099|gb|EEZ77439.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 848
            str. F0332]
          Length = 1175

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 376/1069 (35%), Positives = 578/1069 (54%), Gaps = 64/1069 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YS+L+GA  +  ++ +  A  Q A+AITD    F A EF ++  A G++PI
Sbjct: 5    FAHLHVHTEYSMLDGAAKIKKLVAQAKAQNQKAVAITDHGYCFGAYEFYKECKAQGVKPI 64

Query: 71   IGCQLDID------MQDNLKMTNQGK-----TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IG +  +         D +    +G+     +       + LL    +G   L  + SR 
Sbjct: 65   IGVEAYMTPGTSRFGSDRVLWGEEGQRADDVSARGAYTHLTLLAYNNKGLHNLFRMDSRA 124

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID---RAFFFNSSQVAEKRLLTFKK 176
             L  Q  +  R+ +  L E   EGLI   G  SG +    R   F+ +  A  R+   + 
Sbjct: 125  SLEGQMGKWPRMDMDLL-ETYHEGLIATAGCPSGEVQTRLRLGQFDEAYEAAGRM---QD 180

Query: 177  LFG-DRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            LFG +  YV +  H    ++   ++++ LA   + PL+ATN+S ++   D    D ++ +
Sbjct: 181  LFGKENYYVEVMDHDNSIEKRVRNELLDLARKIDAPLIATNDSHYVEAGDAPIQDAMLCI 240

Query: 235  AHSTVVSQKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAP 290
               + +   DR       Y L++  EM  +F DLP A ENT+ +A RC+         A 
Sbjct: 241  NSGSTLQDPDRFTFDGTGYHLRSSEEMHELFGDLPGACENTLLVAERCNVSFTTADEGAN 300

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             +P F   E +D+      E+      GL VR  +   A      D R+R D+E++VI +
Sbjct: 301  YMPVFPVPEGEDLTSWFVKEVDR----GLHVRFGERIPA------DVRERADYEVSVILQ 350

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F GYFL+V+D+I WAK+N I VGPGRGSGAGS+ AYAL IT++DP+R  LLFERFLNP
Sbjct: 351  MGFPGYFLVVSDYILWAKRNGIRVGPGRGSGAGSMVAYALQITELDPIRHGLLFERFLNP 410

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPD D+DF + RR EVI YV+ KYG E+V+Q++TFG+++ K AL+D  R L  P+ 
Sbjct: 411  ERVSMPDIDVDFDERRRGEVIEYVEKKYGAEKVSQVVTFGTIKTKQALKDSARVLGYPFE 470

Query: 471  QVDRLCKLIP-----NDPA----HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
              +R+ K +P      D A    H    +   +   FR+    D    ++ E++Q L GL
Sbjct: 471  MGERMTKALPPTVQGKDIALADIHNEKAERFVEAGDFRQLVAGDQDASKVFELAQGLAGL 530

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HA  +++   PL  ++P+ +       +TQF     E+ G++K DFLGL  LT 
Sbjct: 531  TRQWGVHACAVLMCSEPLMDVIPIMKRPSDGATITQFEYPLCEELGVLKMDFLGLSNLTT 590

Query: 582  LQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++ +LD +   G  +V +  +  DD  T+ LL    TLG+FQL+ SGMR  L+ M+P   
Sbjct: 591  IEDALDNIVYNGKERVAIEEVELDDQPTFELLQRADTLGVFQLDGSGMRALLKQMRPTEF 650

Query: 641  EDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQ 694
            EDI A+ +LYRPGP  +++   Y  RKNG ++I  IHP ++  L+E    T G+I+YQEQ
Sbjct: 651  EDISAVSALYRPGPMGMNSHTSYALRKNGLQEIAPIHPELEEPLREILAPTYGLIVYQEQ 710

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VMQIA++ +G+++ +AD LR+AMGKK  + + KQ E F +G   NG SK     ++E+L 
Sbjct: 711  VMQIARVCAGFTMGQADTLRKAMGKKKLDVLQKQFEGFSAGMLANGYSKECVDRLWEILV 770

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNKSH+A Y VISY TA++K +YPVEF+AA +T + DN +K+  +  + R+  I
Sbjct: 771  PFAQYAFNKSHSACYGVISYWTAFLKANYPVEFMAALLTSKKDNKDKLALYLGECRRMGI 830

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873
             ++ P VN    DF     ++ + L+A++ VG      I+ A  +K  F S +DF  +V 
Sbjct: 831  TVLVPDVNDSDSDFSAVGEQVRFGLSAVRNVGANVVEGILGARREKGAFTSFQDFLDKVP 890

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---E 930
             +  N+R +E LV AGA D  GYSR  LL  ++        ++KN      ++F     +
Sbjct: 891  LQVCNKRAIECLVKAGAFDSMGYSRKALLAKVEEAVDSVVSLKKNEAAGQFDLFGGADVD 950

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG----IKGYEES 986
             G   D + +      +  V+ ++E+ +LG Y S HPL   + +L +      ++   E 
Sbjct: 951  LGAGVD-VVVPDIPEWDKKVKLDHERDMLGLYVSDHPLSGMEHVLDRAADTTIVRLMNEE 1009

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT--FSEPAKEYEANFFP 1033
              +I+   + LA ++ S Q + ++K  ++ W T    +     E NFFP
Sbjct: 1010 --SIQEGFVSLAGLITSVQPRVSKKNGKL-WATIILEDLTGSAEINFFP 1055


>gi|145628379|ref|ZP_01784180.1| DNA polymerase III subunit alpha [Haemophilus influenzae 22.1-21]
 gi|144980154|gb|EDJ89813.1| DNA polymerase III subunit alpha [Haemophilus influenzae 22.1-21]
          Length = 847

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 323/719 (44%), Positives = 449/719 (62%), Gaps = 32/719 (4%)

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
            Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+D
Sbjct: 9    YDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLD 68

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            PL F LLFERFLNP+R+SMPDFD+DFC D RD VI +V   YG   V+QIITFG++ AKA
Sbjct: 69   PLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKA 128

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
             +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + + + A  +D  V  L+++++
Sbjct: 129  VIRDVGRVLGHPYGFVDRISKLIPLDPGMTLA-KAFEAEPQLQTAYDSDEEVQALIDMAR 187

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            KLEG+ R+A  HA G+VI    ++   P+Y D     PVT F+   +E AGL+KFDFLGL
Sbjct: 188  KLEGVTRNAGKHAGGVVISPTLITDFSPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGL 247

Query: 577  KTLTLLQKSLDFLAQRGV-----KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            +TLT+++ +LD +  R V     +VD++ IP DD E++ LL    T  +FQLES GM+  
Sbjct: 248  RTLTIIKWALDMINVRMVREGKPRVDIAAIPLDDPESFELLKRAETTAVFQLESRGMKDL 307

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKE 684
            ++ +QPDC EDIIALV+L+RPGP+ + +V N  +RK+G+E++        H  + P+L+ 
Sbjct: 308  IKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREEVSYPDAEYQHESLKPILEP 367

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+I+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   
Sbjct: 368  TYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEEMAKQRSVFKEGAVKNGVDGE 427

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI  
Sbjct: 428  LSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVG 487

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-F 862
               +  +  +++ PP +N     F V +   I Y + AIKGVG      ++ A  +   F
Sbjct: 488  LYDECLRMGLKVTPPDINVGKHHFSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIF 547

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
              L D C+RVD KK+NRR  ESL+ +GA D  G  R  L ++L++  K +    K+    
Sbjct: 548  KDLFDLCARVDLKKINRRTFESLIMSGAFDKLGPHRAALSKNLEDALKASDQHAKDEAMG 607

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVR---------FENEQRVLGFYFSGHPLDVYKP 973
              ++F     T  D        VEN+             + E+  LG Y S HP+  Y  
Sbjct: 608  QTDMFGVLTETHED--------VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLK 659

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             L        ++     RG    +A ++VS +   T+KG+R+G  T  + +   +   F
Sbjct: 660  ELSHYTSTRLKDLAPNRRGQISTVAGLLVSSRIAITKKGNRLGIATLDDRSGRLDLTLF 718


>gi|313637979|gb|EFS03276.1| DNA polymerase III subunit alpha [Listeria seeligeri FSL S4-171]
          Length = 962

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 366/999 (36%), Positives = 572/999 (57%), Gaps = 47/999 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S+++++ K      PA+AITD N L+ A+EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASVDSLVAKAKEYHYPALAITDKNVLYGAVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + + +Q  L   N  +        ++L+  T  GY  L+++ S +   ++G++   
Sbjct: 63   IG--MTVTIQGYLNPINSYE--------LILIAETTAGYHELLKIASAIQTREEGQE--- 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   +E LI ++ G+ G ++R     +   A +       +FG D +Y++LQ+ 
Sbjct: 110  LPQSWLRAY-SEDLIAISPGAKGEVERLLMEENRDGALEAYQNLVAIFGGDSVYLSLQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +     ++       ++  VAT N  ++  +D +A +VL A+  +  V  +  P   
Sbjct: 169  ---NPRLFGKIETFCTEEKVRAVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWETLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P+++           +D   +  E T E+A RC   + +   +LPRF      +  +   
Sbjct: 226  PNYFTSQEEIEREWQTDFEKQVCEETGELAARCKVEIALDQHLLPRF----PLNADQSAS 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR  A AGLE R        G  A DY++RLD+EL VI  M F+ YFLIV D I++++
Sbjct: 282  EVLRQTAYAGLEER--------GLMAPDYQERLDYELKVITEMGFADYFLIVWDVIRYSR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334  EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     ++
Sbjct: 394  EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--IT 451

Query: 489  LQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            LQ AI ++ R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V +  
Sbjct: 452  LQKAIQENPRLENHIKSSKINEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQL 511

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D 
Sbjct: 512  G-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNREKPLTLAAISLEDE 570

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L  T  T G+FQ ES G+R+ L  ++P   EDI+A+ +LYRPGP++ I  +  RK+
Sbjct: 571  KTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDIVAVDALYRPGPMEQIDTFIARKH 630

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GKE I   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + ++
Sbjct: 631  GKEAIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLN 690

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +++  F+ GA   G S++ A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K +YP  
Sbjct: 691  EERIHFVEGARSKGYSESSANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKANYPAA 750

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGV 845
            F+++ ++    N +KI ++  +A+ + I+++ PS+N     F++ G+N I YS   I+ V
Sbjct: 751  FMSSLLSSVFGNDDKISQYITEAKNYGIRMLAPSINHSNYYFQMEGENAIRYSFRVIRKV 810

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
             T     I+      PF    DFC R+  K L   +LE+LV +G  D FG  R  +L ++
Sbjct: 811  PTKFILEIINERKKAPFQDFFDFCERMPHKMLTETILEALVLSGCFDEFGEDRATVLATI 870

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963
            D + +Y   + ++  +K  N+FA E   F  K+          S+  + E E+   G Y 
Sbjct: 871  DAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKAAPISIDEKLEKEKLYTGQYV 927

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMV 1001
            S HP+  Y+  L+ + I      +A I  G N R+A  V
Sbjct: 928  SAHPVSYYQTKLQNLAIT----RLADIHSGKNYRVAVYV 962


>gi|328947381|ref|YP_004364718.1| DNA polymerase III subunit alpha [Treponema succinifaciens DSM 2489]
 gi|328447705|gb|AEB13421.1| DNA polymerase III, alpha subunit [Treponema succinifaciens DSM 2489]
          Length = 1213

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 378/1055 (35%), Positives = 569/1055 (53%), Gaps = 76/1055 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL VHS YS+L+GA  ++ ++ +      PA+A+TD  N+F +L F +     GI P
Sbjct: 18   NFVHLHVHSDYSILDGASKIDTLVARAKELNMPALALTDHGNMFGSLNFEKLCHVNGINP 77

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPS------IVLLVSTAEGYQRLIELVSRMYLLD 123
            I+G +  +    +   T     PF           ++LL     GY+ +  L S  Y   
Sbjct: 78   IVGEEFYVAWGSH---TEHNDVPFGRNGKNSHYFHLILLCENQTGYKNMSWLSSIAYTEG 134

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182
                  RI    L++   EGLI L+    G + +       + A +    +K+LFG DR 
Sbjct: 135  LYYGKPRIDFELLKKY-HEGLICLSACIQGELPQLLLNGREEDAYRVAKEYKELFGPDRY 193

Query: 183  YVNLQRHRGYDRYRESQV--VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            Y+ +Q H G D  +E  V  ++L+   ++PLV TN+  + +++D EA D L  +    ++
Sbjct: 194  YIEIQDH-GLDEQKEVAVNLIKLSKDLDIPLVLTNDVHYCNKDDAEAQDALRCIGFKKLL 252

Query: 241  SQKDRPRVT-----PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF-ILQVHAP---- 290
               D P  T      + YLK   EM  +F + PEA+ NT++IA  C+  I Q   P    
Sbjct: 253  ---DEPHQTMGGGRKEWYLKTEQEMSILFPNYPEAMANTIKIANMCNLTIHQYTTPELKG 309

Query: 291  ILPRF---IE-KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
             LPRF   IE ++ +D  + +++ +R     GL VR  +         Q  R+R ++EL 
Sbjct: 310  CLPRFSLPIEFQKHEDYTENQDDYVRCLVEKGLRVRYPE-------ITQAIRRRCEYELG 362

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            +I +M FSGYFLIV +FI WAK++ IP+GPGRGSGAGS+ AY +TITDIDP RF L+FER
Sbjct: 363  IIFKMGFSGYFLIVWEFINWAKEHGIPIGPGRGSGAGSLVAYCMTITDIDPFRFKLIFER 422

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPDFDID   D R  +I++ +  YG  +V  I+TFG+L+ K  L DVGR L 
Sbjct: 423  FLNPERVSMPDFDIDMDFDFRQNIIQHTRETYGEPQVGHIVTFGTLKPKNCLADVGRILN 482

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP--------------SVDRLL 512
            +P S V ++   IP++P   +         +F +     P              + DR +
Sbjct: 483  IPLSIVTKVKACIPDNPKAKLKNALEPPTDKFPDGGQLIPISENPETTIGLDKKTFDRWI 542

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             + +KLEGL R+   HA+G+VIG   L    P+++D ++     Q+ M  IE  GL+KFD
Sbjct: 543  ALCKKLEGLIRNTGLHASGMVIGLTALPDWAPVFKDPKTGEVAVQYTMDIIEPCGLVKFD 602

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSL----IPFDDHETYHLLTTKGTLGIFQLESSGM 628
            +LGLKTL+L++ + + + +     +       +   D ET+ L     ++ IFQ ES GM
Sbjct: 603  YLGLKTLSLIRYAENIINKHKKPDEPEFKTENVSETDSETFDLFCRGDSVAIFQFESPGM 662

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            ++ L   QP C+E+++AL +LYRPGP+D I  Y   K   E +    P ++ +LKET GV
Sbjct: 663  QKILRQCQPRCVEELVALNALYRPGPLDYIPQYIEGKWKPETVHYPDPCLEGILKETYGV 722

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++YQEQVMQ+AQ ++G+SL  AD+LRRAMGKK  E +  +K  F  GA K G +K  A  
Sbjct: 723  MVYQEQVMQVAQKIAGFSLGGADMLRRAMGKKKLEVLMGKKVEFEEGAIKQGYTKEHADE 782

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            IF+++  FA YGFNKSHAAAY V++Y+T W+KTH   EF+AA++T E+ + + + ++ ++
Sbjct: 783  IFDIMVPFAGYGFNKSHAAAYTVLAYRTGWLKTHKKAEFMAANLTNEITSTDTLPEYIEE 842

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLED 867
            AR+  I + PP VN     F V D  I + L  IKG+G   AR I+E    + P+ S  D
Sbjct: 843  ARKMGIPVDPPDVNRSDSIFDVIDGHIVFGLKGIKGMGEGAARAIVEEREKNGPYKSFVD 902

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F  R+ SK +N++ +E L+  GA D  G +R  L  + + + +Y    +KN + ++    
Sbjct: 903  FIERLSSKDVNKKAIEVLIKTGAFDNLGQNRATLTMNFERVIEYED--KKNASKEYGQAS 960

Query: 928  AHEKGTFSDKITLEKFSVENSS-----VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
              E     +    E F  E         R   E+ ++G + SGHPLD YK  +       
Sbjct: 961  LFEDAGIKE---FEDFKFEECEDLPKMERLNMEKELIGCFVSGHPLDDYKTAI------- 1010

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              E+ AT    NI   A +   ++       R  W
Sbjct: 1011 --ETCATCNSENIERWAKIDKAEKASLESSGRSSW 1043


>gi|306818530|ref|ZP_07452253.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus mulieris
            ATCC 35239]
 gi|304648703|gb|EFM46005.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus mulieris
            ATCC 35239]
          Length = 1273

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 371/1052 (35%), Positives = 579/1052 (55%), Gaps = 64/1052 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VH+ YS+L+GA  +  +++K A + Q A+AITD   LF A EF   A   G+
Sbjct: 6    SSDFVHLHVHTDYSILDGAAKVARLVEKAAENGQSAVAITDHGYLFGAYEFYAAAVKTGV 65

Query: 68   QPIIGCQLDID-----------MQDNLKMTNQGK--TPFPTVPSIVLLVSTAEGYQRLIE 114
            +PIIG +  +                L+    G   +       + LL  T EG   L  
Sbjct: 66   KPIIGLEAYVTPGTSRFDTKRVHWGTLEQQKAGDDVSANGAYTHMTLLSRTTEGMHNLFR 125

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S   +  Q  +  R+    LQ     GL+  +G  SG +           A +     
Sbjct: 126  LGSLASIDGQMGKWPRLDRELLQRYAG-GLVGTSGCPSGEVQVKLRLGLYDEALRTAGEL 184

Query: 175  KKLFGDRL-YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG    Y+ L  H    +R     +++LA   + PL+ATN+S ++++ED E  D ++
Sbjct: 185  QDIFGKEFFYIELMDHGLSIERRVREDLLRLAKALDAPLLATNDSHYVNKEDREIQDAML 244

Query: 233  AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---H 288
             +     ++ ++R R    D+YL+  +EM  +F DLP+A +NT+ +A +C          
Sbjct: 245  CINSGDQLNNENRFRFDGTDYYLRPSNEMRELFRDLPQACDNTLLVAEQCEVKFSTVDDG 304

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
            A  +P+F     ++    EE+    +   GL  R  QG        +  R+R D+E+ +I
Sbjct: 305  ASFMPKFQVPAGEN----EESWFVKEVERGLNYRYPQGI------TEAVRKRADYEVGII 354

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F+GYFL+V+D+IQWAK+  I VGPGRGSGAGS+ AYA+ ITD+DPL+  LLFERFL
Sbjct: 355  LQMGFAGYFLVVSDYIQWAKQQGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLLFERFL 414

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DF   RR EVI YV  KYG +++AQ++T+G+++ K AL+D  R     
Sbjct: 415  NPERVSMPDIDVDFDDRRRAEVIEYVTRKYGKDKIAQVVTYGTIKTKQALKDAARISGAA 474

Query: 469  YSQVDRLCKLIPNDPAH-----PVSLQAIADDSRFREAR-----LADPSVDR-LLEISQK 517
            +S  + L K +P  PA      P+S     D  R++EA      +A    ++ +  ++  
Sbjct: 475  FSVGENLTKALP--PAAMGKDIPLSQIYNKDHPRYKEAEEFRKVVASTGENQAIFSLASG 532

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EG+ R    HA  +++    L+ ++PM + ++    +TQF+    E  GL+K DFLGLK
Sbjct: 533  VEGMTRQWGVHACAVIMSSHTLTDIIPMMKRLQDGAIITQFDYPTCEHLGLLKMDFLGLK 592

Query: 578  TLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT++  +LD +   G    DL  +P DD  TY LL++  TLG+FQL+  GMR  L+ ++
Sbjct: 593  NLTIISDALDNIKLNGKTPPDLEHLPIDDRATYELLSSGETLGVFQLDGGGMRTLLKQLR 652

Query: 637  PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVII 690
            P   +DI ALV+LYRPGP+  D+   Y  RKNG   I  IHP L DP+   L  T G+II
Sbjct: 653  PTEFDDISALVALYRPGPMGADSHTNYALRKNGAMGIKPIHPELADPLKDILGYTYGLII 712

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G   NG S+     ++
Sbjct: 713  YQEQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMLGNGYSEDCCKTLW 772

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            ++L  FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + D  +K+  +  + R
Sbjct: 773  DILVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQTDK-DKLGMYLNEVR 831

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFC 869
            +  I+++PP VN     F      I + LA+I+ VG      I+++  DK  + S +DF 
Sbjct: 832  RMGIRVLPPDVNASVATFAPDGADIRFGLASIRNVGEGVVEGIIKSRRDKGAYTSFQDFL 891

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            ++V ++  N+R +ESL+ AGA D FG +R  L+   +        +++  +    ++FA 
Sbjct: 892  NKVPAEVCNKRAIESLIKAGAFDAFGVARRALVAVHEEAVDSVISLKRQESKGQFDLFAS 951

Query: 930  EKGTFSDKITLEKFSVENSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
              G   D   LE FSVE  ++       +   E+++LG Y S HPL   + +LR++    
Sbjct: 952  LDGGGDD--LLEGFSVEIPALKEWPKKDKLAFERQMLGLYVSDHPLSGMENVLRRLAADQ 1009

Query: 983  YEESVATIRGNN---IRLAAMVVSKQQKKTRK 1011
              E  +     N   +R+A ++ S + K +++
Sbjct: 1010 IIELTSEDGKPNDAEVRIAGLITSVEHKTSKR 1041


>gi|227875268|ref|ZP_03993410.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|227844173|gb|EEJ54340.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
          Length = 1273

 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 371/1052 (35%), Positives = 579/1052 (55%), Gaps = 64/1052 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VH+ YS+L+GA  +  +++K A + Q A+AITD   LF A EF   A   G+
Sbjct: 6    SSDFVHLHVHTDYSILDGAAKVARLVEKAAENGQSAVAITDHGYLFGAYEFYAAAVKTGV 65

Query: 68   QPIIGCQLDID-----------MQDNLKMTNQGK--TPFPTVPSIVLLVSTAEGYQRLIE 114
            +PIIG +  +                L+    G   +       + LL  T EG   L  
Sbjct: 66   KPIIGLEAYVTPGTSRFDTKRVHWGTLEQQKAGDDVSANGAYTHMTLLSRTTEGMHNLFR 125

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S   +  Q  +  R+    LQ     GL+  +G  SG +           A +     
Sbjct: 126  LGSLASIDGQMGKWPRLDRELLQRYAG-GLVGTSGCPSGEVQVKLRLGLYDEALRTAGEL 184

Query: 175  KKLFGDRL-YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG    Y+ L  H    +R     +++LA   + PL+ATN+S ++++ED E  D ++
Sbjct: 185  QDIFGKEFFYIELMDHGLSIERRVREDLLRLAKALDAPLLATNDSHYVNKEDREIQDAML 244

Query: 233  AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---H 288
             +     ++ ++R R    D+YL+  +EM  +F DLP+A +NT+ +A +C          
Sbjct: 245  CINSGDQLNNENRFRFDGTDYYLRPSNEMRELFRDLPQACDNTLLVAEQCEVKFSTVDDG 304

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
            A  +P+F     ++    EE+    +   GL  R  QG        +  R+R D+E+ +I
Sbjct: 305  ASFMPKFQVPAGEN----EESWFVKEVERGLNYRYPQGI------TEAVRKRADYEVGII 354

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F+GYFL+V+D+IQWAK+  I VGPGRGSGAGS+ AYA+ ITD+DPL+  LLFERFL
Sbjct: 355  LQMGFAGYFLVVSDYIQWAKQQGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLLFERFL 414

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DF   RR EVI YV  KYG +++AQ++T+G+++ K AL+D  R     
Sbjct: 415  NPERVSMPDIDVDFDDRRRAEVIEYVTRKYGKDKIAQVVTYGTIKTKQALKDAARISGAA 474

Query: 469  YSQVDRLCKLIPNDPAH-----PVSLQAIADDSRFREAR-----LADPSVDR-LLEISQK 517
            +S  + L K +P  PA      P+S     D  R++EA      +A    ++ +  ++  
Sbjct: 475  FSVGENLTKALP--PAAMGKDIPLSQIYNKDHPRYKEAEEFRKVVASTGENQAIFSLASG 532

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EG+ R    HA  +++    L+ ++PM + ++    +TQF+    E  GL+K DFLGLK
Sbjct: 533  VEGMTRQWGVHACAVIMSSHTLTDIIPMMKRLQDGAIITQFDYPTCEHLGLLKMDFLGLK 592

Query: 578  TLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT++  +LD +   G    DL  +P DD  TY LL++  TLG+FQL+  GMR  L+ ++
Sbjct: 593  NLTIISDALDNIKLNGKTPPDLEHLPIDDRATYELLSSGETLGVFQLDGGGMRTLLKQLR 652

Query: 637  PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVII 690
            P   +DI ALV+LYRPGP+  D+   Y  RKNG   I  IHP L DP+   L  T G+II
Sbjct: 653  PTEFDDISALVALYRPGPMGADSHTNYALRKNGAMGIKPIHPELADPLKDILGYTYGLII 712

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G   NG S+     ++
Sbjct: 713  YQEQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMLGNGYSEDCCKTLW 772

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            ++L  FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + D  +K+  +  + R
Sbjct: 773  DILVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQTDK-DKLGMYLNEVR 831

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFC 869
            +  I+++PP VN     F      I + LA+I+ VG      I+++  DK  + S +DF 
Sbjct: 832  RMGIRVLPPDVNASVATFAPDGADIRFGLASIRNVGEGVVEGIIKSRRDKGAYTSFQDFL 891

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            ++V ++  N+R +ESL+ AGA D FG +R  L+   +        +++  +    ++FA 
Sbjct: 892  NKVPAEVCNKRAIESLIKAGAFDAFGVARRALVAVHEEAVDSVISLKRQESKGQFDLFAS 951

Query: 930  EKGTFSDKITLEKFSVENSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
              G   D   LE FSVE  ++       +   E+++LG Y S HPL   + +LR++    
Sbjct: 952  LDGGGDD--LLEGFSVEIPALKEWPKKDKLAFERQMLGLYVSDHPLSGMENVLRRLAADQ 1009

Query: 983  YEESVATIRGNN---IRLAAMVVSKQQKKTRK 1011
              E  +     N   +R+A ++ S + K +++
Sbjct: 1010 IIELTSEDGKPNDAEVRIAGLITSVEHKTSKR 1041


>gi|307700773|ref|ZP_07637798.1| DNA polymerase III subunit alpha [Mobiluncus mulieris FB024-16]
 gi|307613768|gb|EFN93012.1| DNA polymerase III subunit alpha [Mobiluncus mulieris FB024-16]
          Length = 1270

 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 371/1052 (35%), Positives = 579/1052 (55%), Gaps = 64/1052 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VH+ YS+L+GA  +  +++K A + Q A+AITD   LF A EF   A   G+
Sbjct: 3    SSDFVHLHVHTDYSILDGAAKVARLVEKAAENGQSAVAITDHGYLFGAYEFYAAAVKTGV 62

Query: 68   QPIIGCQLDID-----------MQDNLKMTNQGK--TPFPTVPSIVLLVSTAEGYQRLIE 114
            +PIIG +  +                L+    G   +       + LL  T EG   L  
Sbjct: 63   KPIIGLEAYVTPGTSRFDTKRVHWGTLEQQKAGDDVSANGAYTHMTLLSRTTEGMHNLFR 122

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S   +  Q  +  R+    LQ     GL+  +G  SG +           A +     
Sbjct: 123  LGSLASIDGQMGKWPRLDRELLQRYAG-GLVGTSGCPSGEVQVKLRLGLYDEALRTAGEL 181

Query: 175  KKLFGDRL-YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG    Y+ L  H    +R     +++LA   + PL+ATN+S ++++ED E  D ++
Sbjct: 182  QDIFGKEFFYIELMDHGLSIERRVREDLLRLAKALDAPLLATNDSHYVNKEDREIQDAML 241

Query: 233  AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---H 288
             +     ++ ++R R    D+YL+  +EM  +F DLP+A +NT+ +A +C          
Sbjct: 242  CINSGDQLNNENRFRFDGTDYYLRPSNEMRELFRDLPQACDNTLLVAEQCEVKFSTVDDG 301

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
            A  +P+F     ++    EE+    +   GL  R  QG        +  R+R D+E+ +I
Sbjct: 302  ASFMPKFQVPAGEN----EESWFVKEVERGLNYRYPQGI------TEAVRKRADYEVGII 351

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F+GYFL+V+D+IQWAK+  I VGPGRGSGAGS+ AYA+ ITD+DPL+  LLFERFL
Sbjct: 352  LQMGFAGYFLVVSDYIQWAKQQGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLLFERFL 411

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DF   RR EVI YV  KYG +++AQ++T+G+++ K AL+D  R     
Sbjct: 412  NPERVSMPDIDVDFDDRRRAEVIEYVTRKYGKDKIAQVVTYGTIKTKQALKDAARISGAA 471

Query: 469  YSQVDRLCKLIPNDPAH-----PVSLQAIADDSRFREAR-----LADPSVDR-LLEISQK 517
            +S  + L K +P  PA      P+S     D  R++EA      +A    ++ +  ++  
Sbjct: 472  FSVGENLTKALP--PAAMGKDIPLSQIYNKDHPRYKEAEEFRKVVASTGENQAIFSLASG 529

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EG+ R    HA  +++    L+ ++PM + ++    +TQF+    E  GL+K DFLGLK
Sbjct: 530  VEGMTRQWGVHACAVIMSSHTLTDIIPMMKRLQDGAIITQFDYPTCEHLGLLKMDFLGLK 589

Query: 578  TLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT++  +LD +   G    DL  +P DD  TY LL++  TLG+FQL+  GMR  L+ ++
Sbjct: 590  NLTIISDALDNIKLNGKTPPDLEHLPIDDRATYELLSSGETLGVFQLDGGGMRTLLKQLR 649

Query: 637  PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVII 690
            P   +DI ALV+LYRPGP+  D+   Y  RKNG   I  IHP L DP+   L  T G+II
Sbjct: 650  PTEFDDISALVALYRPGPMGADSHTNYALRKNGAMGIKPIHPELADPLKDILGYTYGLII 709

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G   NG S+     ++
Sbjct: 710  YQEQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMLGNGYSEDCCKTLW 769

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            ++L  FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + D  +K+  +  + R
Sbjct: 770  DILVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQTDK-DKLGMYLNEVR 828

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFC 869
            +  I+++PP VN     F      I + LA+I+ VG      I+++  DK  + S +DF 
Sbjct: 829  RMGIRVLPPDVNASVATFAPDGADIRFGLASIRNVGEGVVEGIIKSRRDKGAYTSFQDFL 888

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            ++V ++  N+R +ESL+ AGA D FG +R  L+   +        +++  +    ++FA 
Sbjct: 889  NKVPAEVCNKRAIESLIKAGAFDAFGVARRALVAVHEEAVDSVISLKRQESKGQFDLFAS 948

Query: 930  EKGTFSDKITLEKFSVENSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
              G   D   LE FSVE  ++       +   E+++LG Y S HPL   + +LR++    
Sbjct: 949  LDGGGDD--LLEGFSVEIPALKEWPKKDKLAFERQMLGLYVSDHPLSGMENVLRRLAADQ 1006

Query: 983  YEESVATIRGNN---IRLAAMVVSKQQKKTRK 1011
              E  +     N   +R+A ++ S + K +++
Sbjct: 1007 IIELTSEDGKPNDAEVRIAGLITSVEHKTSKR 1038


>gi|269978157|ref|ZP_06185107.1| DNA polymerase III subunit alpha [Mobiluncus mulieris 28-1]
 gi|269933666|gb|EEZ90250.1| DNA polymerase III subunit alpha [Mobiluncus mulieris 28-1]
          Length = 1270

 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 371/1052 (35%), Positives = 579/1052 (55%), Gaps = 64/1052 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VH+ YS+L+GA  +  +++K A + Q A+AITD   LF A EF   A   G+
Sbjct: 3    SSDFVHLHVHTDYSILDGAAKVARLVEKAAENGQSAVAITDHGYLFGAYEFYAAAVKTGV 62

Query: 68   QPIIGCQLDID-----------MQDNLKMTNQGK--TPFPTVPSIVLLVSTAEGYQRLIE 114
            +PIIG +  +                L+    G   +       + LL  T EG   L  
Sbjct: 63   KPIIGLEAYVTPGTSRFDTKRVHWGTLEQQKAGDDVSANGAYTHMTLLSRTTEGMHNLFR 122

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S   +  Q  +  R+    LQ     GL+  +G  SG +           A +     
Sbjct: 123  LGSLASIDGQMGKWPRLDRELLQRYAG-GLVGTSGCPSGEVQVKLRLGLYDEALRTAGEL 181

Query: 175  KKLFGDRL-YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG    Y+ L  H    +R     +++LA   + PL+ATN+S ++++ED E  D ++
Sbjct: 182  QDIFGKEFFYIELMDHGLSIERRVREDLLRLAKALDAPLLATNDSHYVNKEDREIQDAML 241

Query: 233  AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---H 288
             +     ++ ++R R    D+YL+  +EM  +F DLP+A +NT+ +A +C          
Sbjct: 242  CINSGDQLNNENRFRFDGTDYYLRPSNEMRELFRDLPQACDNTLLVAEQCEVKFSTVDDG 301

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
            A  +P+F     ++    EE+    +   GL  R  QG        +  R+R D+E+ +I
Sbjct: 302  ASFMPKFQVPAGEN----EESWFVKEVERGLNYRYPQGI------TEAVRKRADYEVGII 351

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F+GYFL+V+D+IQWAK+  I VGPGRGSGAGS+ AYA+ ITD+DPL+  LLFERFL
Sbjct: 352  LQMGFAGYFLVVSDYIQWAKQQGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLLFERFL 411

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DF   RR EVI YV  KYG +++AQ++T+G+++ K AL+D  R     
Sbjct: 412  NPERVSMPDIDVDFDDRRRAEVIEYVTRKYGKDKIAQVVTYGTIKTKQALKDAARISGAA 471

Query: 469  YSQVDRLCKLIPNDPAH-----PVSLQAIADDSRFREAR-----LADPSVDR-LLEISQK 517
            +S  + L K +P  PA      P+S     D  R++EA      +A    ++ +  ++  
Sbjct: 472  FSVGENLTKALP--PAAMGKDIPLSQIYNKDHPRYKEAEEFRKVVASTGENQAIFSLASG 529

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EG+ R    HA  +++    L+ ++PM + ++    +TQF+    E  GL+K DFLGLK
Sbjct: 530  VEGMTRQWGVHACAVIMSSHTLTDIIPMMKRLQDGAIITQFDYPTCEHLGLLKMDFLGLK 589

Query: 578  TLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT++  +LD +   G    DL  +P DD  TY LL++  TLG+FQL+  GMR  L+ ++
Sbjct: 590  NLTIISDALDNIKLNGKTPPDLEHLPIDDRATYELLSSGETLGVFQLDGGGMRTLLKQLR 649

Query: 637  PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVII 690
            P   +DI ALV+LYRPGP+  D+   Y  RKNG   I  IHP L DP+   L  T G+II
Sbjct: 650  PTEFDDISALVALYRPGPMGADSHTNYALRKNGAMGIKPIHPELADPLKDILGYTYGLII 709

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G   NG S+     ++
Sbjct: 710  YQEQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMLGNGYSEDCCKTLW 769

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            ++L  FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + D  +K+  +  + R
Sbjct: 770  DILVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQTDK-DKLGMYLNEVR 828

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFC 869
            +  I+++PP VN     F      I + LA+I+ VG      I+++  DK  + S +DF 
Sbjct: 829  RMGIRVLPPDVNASVATFAPDGADIRFGLASIRNVGEGVVEGIIKSRRDKGAYTSFQDFL 888

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            ++V ++  N+R +ESL+ AGA D FG +R  L+   +        +++  +    ++FA 
Sbjct: 889  NKVPAEVCNKRAIESLIKAGAFDAFGVARRALVAVHEEAVDSVISLKRQESKGQFDLFAS 948

Query: 930  EKGTFSDKITLEKFSVENSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
              G   D   LE FSVE  ++       +   E+++LG Y S HPL   + +LR++    
Sbjct: 949  LDGGGDD--LLEGFSVEIPALKEWPKKDKLAFERQMLGLYVSDHPLSGMENVLRRLAADQ 1006

Query: 983  YEESVATIRGNN---IRLAAMVVSKQQKKTRK 1011
              E  +     N   +R+A ++ S + K +++
Sbjct: 1007 IIELTSEDGKPNDAEVRIAGLITSVEHKTSKR 1038


>gi|229826056|ref|ZP_04452125.1| hypothetical protein GCWU000182_01420 [Abiotrophia defectiva ATCC
            49176]
 gi|229789798|gb|EEP25912.1| hypothetical protein GCWU000182_01420 [Abiotrophia defectiva ATCC
            49176]
          Length = 1160

 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 369/1071 (34%), Positives = 586/1071 (54%), Gaps = 81/1071 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL +H+ +SLL+G+  ++ ++ ++      A AITD   ++  +EF +   A GI+P
Sbjct: 2    SFTHLHLHTGFSLLDGSSKISELVKRVKELGMDACAITDHGVMYGVIEFYKACKAEGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +    N +     +        ++LL     G++ L+++VSR +  +      
Sbjct: 62   IIGCEVYV--APNSRFEKGTEKSAKRYNHLILLAENDTGHKNLMKIVSRGFT-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
            R+    L+E   EG+I  +   +G +         + A+   L  + +FG+   ++ LQ 
Sbjct: 119  RVDYELLREY-HEGIIASSACLAGIVPTKLREGDYEGAKAEALRLRDVFGENNFFLELQD 177

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H     ++    +++++    +PL+ATN+  +L +ED EAHDVL+ +    +V+  DR +
Sbjct: 178  HGLPEQKFVNQGLMRISAETGIPLIATNDCHYLYKEDAEAHDVLICIQTQKIVTDDDRMK 237

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILP--------RF 295
                  Y+K+  EM  IF  +PEA++NT +IA RC+  ++    H P  P         +
Sbjct: 238  YEGGQFYVKSPEEMKEIFHYIPEAIKNTEKIAERCNVEIEFGKYHLPEYPVPEGYTALSY 297

Query: 296  IEKECDD--------IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
            + K C+D        I  +EENELR                           RL +E++ 
Sbjct: 298  LNKLCEDGFKSRYEGITGDEENELR--------------------------ARLKYEIDT 331

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I+ M F  YFLIV D+I +AK+NNI VGPGRGS AGS+ AY L IT +DP++++LLFERF
Sbjct: 332  ISNMGFVDYFLIVWDYINFAKENNIAVGPGRGSAAGSIVAYCLGITGVDPIKYNLLFERF 391

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R++MPD DIDFC  RR EVI YV  KYG E+V QI+TFG++ AK  +RDVGRAL +
Sbjct: 392  LNPERVTMPDIDIDFCVLRRQEVIDYVTEKYGREKVVQIVTFGTMAAKMVIRDVGRALDL 451

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
            PYS  D++ K+IPN+    +  +A+ D+    +    +    +L+++S++LEGL RH S 
Sbjct: 452  PYSFCDKVAKMIPNELKMNID-KALKDNPDLMQLYEENEEAKKLIDLSRRLEGLPRHTSI 510

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            HAAG+VI  R +   VP+     SD  V TQ+ M+ IE+ GL+K DFLGL+ LT+++K++
Sbjct: 511  HAAGVVISKREVDSYVPI--STSSDGAVTTQYTMETIEQLGLLKMDFLGLRNLTVIEKAV 568

Query: 587  DFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            + + +   K      D+  I  +D   Y +++   T G+FQLES GM   ++ ++PD IE
Sbjct: 569  ELVNRNRRKSGQEDFDIEKIDMEDENIYLMISEGKTEGVFQLESPGMTSFMKKLRPDNIE 628

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            DIIA +SLYRPGP++ I  Y N K    +I      + P+LK T G I+YQEQVMQI + 
Sbjct: 629  DIIAGISLYRPGPMEFIDDYINGKRNSTEIEYDCEELKPILKSTYGCIVYQEQVMQIVRE 688

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERF--------ISGASKNGISKTIAVNIFELL 753
            L+GYS  ++D+LRRAM KK    M ++++ F        I G    G+S+ +A  I++ +
Sbjct: 689  LAGYSYGQSDLLRRAMSKKKDSVMRQERQNFVYGDETKGIPGCVAKGVSEQVANKIYDKM 748

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FN+SHAAAYA I+YQTA++K +YP E++AA +T  M N  K+ ++   ++   
Sbjct: 749  IDFAKYAFNRSHAAAYAFITYQTAYLKYYYPKEYMAALLTSVMSNTGKVSEYILSSKNMG 808

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV 872
            I I+PP VN    +F      I Y ++AIKG+G      I++   ++  + SL D   R+
Sbjct: 809  IAILPPDVNEGEGNFTAVKEGIRYGMSAIKGLGENVTETIVKDREERGEYKSLSDLVERL 868

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHE 930
             S  LN++ LE+L+ +GALD    +R + +   + +       + ++     ++F  A +
Sbjct: 869  -SGILNKKGLEALIKSGALDGLSGTRREKMAVYEQVLDSVSHEKHSKMAGQLSLFDIAPQ 927

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------- 983
            +   + ++ +      +   +   E+ ++G Y SGHPL  Y+  LR +            
Sbjct: 928  EDLSALEVKMPVLGEFDMETKLAFEKEMIGIYLSGHPLYDYQDFLRGICNTNSMDFAYDE 987

Query: 984  EESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            EE    +R G N  L  +      K TR   R+ ++T  +     E   FP
Sbjct: 988  EEGRVNVRSGMNYVLGGIATGVNIKLTRNNQRMAFITLEDLVGNIEIIVFP 1038


>gi|182413909|ref|YP_001818975.1| DNA polymerase III, alpha subunit [Opitutus terrae PB90-1]
 gi|177841123|gb|ACB75375.1| DNA polymerase III, alpha subunit [Opitutus terrae PB90-1]
          Length = 1271

 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 391/1124 (34%), Positives = 594/1124 (52%), Gaps = 124/1124 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+FVHL VHS YSLL+G+  ++ +L +       AIA+TD  NL+ A+EF + A  A ++
Sbjct: 6    PNFVHLHVHSDYSLLDGSCRIDRLLKRTNELGMKAIALTDHGNLYGAIEFYKAAKDAQVK 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQ 127
            P+IGC+L +     L+   +      T+  + LL     GYQ L++LVS  +L  +G   
Sbjct: 66   PLIGCELYLVEHSRLEKHGRSDDDGKTIFHLGLLARNLTGYQNLLKLVSDAHL--KGFYY 123

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              R  +  L +    GLI  +G  +  + +    +    A K    F ++FG +  ++ L
Sbjct: 124  KPRTDIETLAKYAG-GLIGFSGCLASLVPQHLLNDREDEARKACARFVEIFGRENYFIEL 182

Query: 187  QRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            Q H G    R+    ++ LA   +L ++ +N+  +++  D   HD ++ +   + +  + 
Sbjct: 183  QDH-GIPEQRKIIPGLLDLAQEFKLQVICSNDVHYVNHGDAGPHDAMLCIQTGSKIDDEK 241

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD-- 301
            R R +    YLK+R EM  +F ++P +L NT  +A  C   +       P+  E+     
Sbjct: 242  RMRFSGSQFYLKSREEMAQVFREVPASLTNTQLVADMCELAIP-----FPKGSERYPKYP 296

Query: 302  ---DIQKEEENELRNKAVAGLEVR-----------------------LAQGAIAKG---- 331
               +I+ +    L++  VAGL  R                       L  G   +     
Sbjct: 297  LPPEIKTDRGGYLQDLCVAGLRRRYGVDYFAAASHPAAAERLDKLTNLPAGEKPQPPDYT 356

Query: 332  --YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
               H ++   R+ +EL++I    F  YFL+V DFI WAK + +PVGPGRGSGAG + AY 
Sbjct: 357  GLTHEEELVVRMGYELSIIRVTGFIDYFLVVWDFIAWAKSHGVPVGPGRGSGAGCLVAYL 416

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L IT++DPLRF LLFERFLNP+R+S PDFDIDFC  RR+EVI YV+ KYG + VA IIT+
Sbjct: 417  LGITNLDPLRFKLLFERFLNPERVSPPDFDIDFCMRRREEVINYVREKYGKDCVANIITY 476

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G+L AK  +RDV R   +P+++ DRL K+IP D  +     AIA  +        +P   
Sbjct: 477  GTLGAKMVIRDVSRVHNLPFAEADRLAKMIP-DELNITLTDAIAKSAELSSEIARNPVAK 535

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            ++++ +  LEG+ R+   HAAGI+I D+PL   VP+      D+ V QF+M  + K GL+
Sbjct: 536  KIVDQALVLEGMVRNTGKHAAGIIITDQPLDDFVPLTLQ-EGDVTV-QFDMGAVTKLGLL 593

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGLKTLT++  ++D + +    K D+  IP DD +TY +L    T+G+FQLESSGM
Sbjct: 594  KMDFLGLKTLTVIADAVDNVRRTADPKFDIETIPLDDPKTYAMLNAGKTVGVFQLESSGM 653

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            + A + +    I+DI A+ +LYRPGP+  I  Y   K     +   HPL++  L+ET G+
Sbjct: 654  QSACKQVGVSNIDDINAICALYRPGPMQFIPDYARGKKDPSTVEYPHPLLEQSLQETYGI 713

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAV 747
            I+YQEQVM+ A++++GY+L  AD+LRRAMGKK  E M K++ +F+ GA + N I +  A 
Sbjct: 714  IVYQEQVMECAKIIAGYTLGGADMLRRAMGKKDAEAMAKERVKFVEGAKRVNAIDEKKAN 773

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             IF+LL KFA YGFNKSH+AAYA++SYQTA++K +YPV+F+AA +T E+ N EK+  F  
Sbjct: 774  EIFDLLNKFASYGFNKSHSAAYALVSYQTAFLKANYPVQFMAAVLTAELGNAEKVSHFIA 833

Query: 808  DARQFNIQIMPPSVN------TPCV---------------------------------DF 828
            +A    I ++ P +N      TP +                                 + 
Sbjct: 834  EAEAMGITVLGPDINESREMFTPVLRGASSPRAQSPESRVQSQADSELSALNSQLSAAEA 893

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                  I + LA IKGVG   A+ I+E    +  F   +DF +R+D + +N+RVLE LV 
Sbjct: 894  DRAGGAIRFGLAGIKGVGELAAQKIIEERDKNGAFCDFDDFAARMDGRAVNKRVLEHLVK 953

Query: 888  AGALDCFGYSRMQLLQSLDN-------------------IQKYAQWVE-----KNRTNKH 923
             GA D  G  R  L   +D                    +  +A+ +      KN +N H
Sbjct: 954  TGAFDYSGAPRKPLFDGIDAALATVAARARDRAAGQHSFLDMFAEDLAPKKNGKNGSNGH 1013

Query: 924  ENIFAHEK-GTFSDKITLE-KFSVEN----SSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                   +  + SD  TL+ + S  +    S+ R   E+ +LGFY SGHPL+V+  +   
Sbjct: 1014 GAATPSSRPASGSDFSTLDSQLSTSSDDFTSTERLTFEKELLGFYVSGHPLNVFAGLTEA 1073

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            +      E +        RL  +V    ++ ++K +R  W +F+
Sbjct: 1074 IDTYPITELLNQGDRTEFRLCGIVSGIAKRLSKKDNRP-WASFT 1116


>gi|160939913|ref|ZP_02087260.1| hypothetical protein CLOBOL_04804 [Clostridium bolteae ATCC BAA-613]
 gi|158437347|gb|EDP15112.1| hypothetical protein CLOBOL_04804 [Clostridium bolteae ATCC BAA-613]
          Length = 1161

 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 384/1052 (36%), Positives = 592/1052 (56%), Gaps = 49/1052 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +  +  +       ++A+TD   ++  ++F + A  AGI+P
Sbjct: 2    AFTHLHVHTEYSLLDGSCKIRELTARAKELGMDSMAVTDHGVMYGVIDFYKAAREAGIKP 61

Query: 70   IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I+GC++ +       + T  G+  +     +VLL    +GY+ L+++VS+ ++ D     
Sbjct: 62   ILGCEVYVAPGSRFDRETVSGEDRYY---HLVLLAENNKGYENLMKIVSKGFV-DGFYYK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             R+    L+    EG+I L+   +G + R       + A +    +  +FG D  ++ LQ
Sbjct: 118  PRVDYEVLRTY-HEGVIALSACLAGEVQRCLTRGMYEEAVRASEKYVDIFGKDNFFLELQ 176

Query: 188  RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   D+   +Q +++++    L LVATN+  +   ED +AHD+L+ +     V+ +DR 
Sbjct: 177  DHGLPDQKLVNQGLMRMSRDTGLKLVATNDIHYTFAEDEKAHDILLCIQTGKKVADEDRM 236

Query: 247  RVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R     +Y K+  EM ++F   PEA+ENT  IA RC+  ++     LP++   E  D   
Sbjct: 237  RYEGGQYYCKSEEEMRALFPYAPEAIENTHMIAERCNVEIEFGVTKLPKYEVPEGFD--- 293

Query: 306  EEENELRNKAVAGLEVRLAQ--GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               + L +    G + R     G ++          RLD+EL+VI  M +  YFLIV DF
Sbjct: 294  -SWSYLNHLCREGFKTRYPDDDGTLS---------SRLDYELDVIRSMGYVDYFLIVWDF 343

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I +A+  +I VGPGRGS AGS+ +Y L IT+IDP+R++LLFERFLNP+R+SMPD DIDFC
Sbjct: 344  INYARSQDIIVGPGRGSAAGSIVSYTLGITNIDPVRYNLLFERFLNPERVSMPDIDIDFC 403

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR EVI YV  KYG ++V QI+TFG+L AK  +RDVGR L +PYS  D + K+IP D 
Sbjct: 404  YERRQEVIDYVVRKYGKDQVVQIVTFGTLAAKGVVRDVGRVLDLPYSLCDTIAKMIPGDL 463

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A+  +   ++A   D  V  L+++S++LEGL RH S HAAG+VIG R + + V
Sbjct: 464  GMTLD-KALTMNPDLKKAYNEDEQVHYLIDMSRRLEGLPRHTSMHAAGVVIGSRSIDEFV 522

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--GVKVDLSLI 601
            P+ R        TQF M  IE+ GL+K DFLGL+TLT++Q ++  LA++  G+ +D+  I
Sbjct: 523  PLSR-ASDGTITTQFTMTTIEELGLLKMDFLGLRTLTVIQNAVR-LAEKDYGITIDIDHI 580

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             FDD +    + T  T G+FQLES+GM+  ++ ++ + +EDIIA +SLYRPGP+D I  Y
Sbjct: 581  DFDDKKVLESIGTGRTEGVFQLESAGMKSFMKELKAENLEDIIAGISLYRPGPMDFIPKY 640

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               KN +  I    P ++P+L  T G I+YQEQVMQI + L+GY++  +D++RRAM KK 
Sbjct: 641  LKGKNDRASITYDCPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSKKK 700

Query: 722  KEEMDKQKERFISGAS--------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               M+K+++ F+ G+          NGI +  A +I++ +  FA Y FNKSHAAAYAV+S
Sbjct: 701  TSVMEKERQNFVYGSQSEGVKGCVNNGIDEKTANHIYDEMIDFAKYAFNKSHAAAYAVVS 760

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGD 832
            YQTA++K +YP EF+AA MT  MDNV K  ++    R+   I ++PP +N     F V  
Sbjct: 761  YQTAYLKYYYPREFMAALMTSVMDNVSKFSEYVLTCRRMMGIPVLPPDINEGESGFSVSG 820

Query: 833  NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + I Y L+AIK VG      I+ E   + PF S+EDF  R+  K++N+R LE+ + +GAL
Sbjct: 821  DAIRYGLSAIKSVGKPVTEVILAERERNGPFRSMEDFVGRMSMKEVNKRTLENFIKSGAL 880

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSS 949
            D    +R Q +     + +     +K+      ++F  A E+     +IT       +  
Sbjct: 881  DTLPGTRRQKMAVAPTMLEEKAREKKSMFEGQLSLFDIAGEEDRNEFQITFPDVGEYSKD 940

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRK--------MGIKGYEESVATIRGNNIRLAAMV 1001
                 E+ +LG Y SGHPLD Y+   R+          +    ++     G+   +  +V
Sbjct: 941  ELLAFEKEILGVYISGHPLDDYEDTWRRNITATSAQFIVDEETDAAGVADGSRAVIGGLV 1000

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              K  K TR    + ++T  +     E   FP
Sbjct: 1001 AGKTVKTTRTNQLMAFITLEDLLGPVEVIVFP 1032


>gi|312196291|ref|YP_004016352.1| DNA polymerase III subunit alpha [Frankia sp. EuI1c]
 gi|311227627|gb|ADP80482.1| DNA polymerase III, alpha subunit [Frankia sp. EuI1c]
          Length = 1178

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 381/1073 (35%), Positives = 586/1073 (54%), Gaps = 64/1073 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL VH+ YS+L+GA  L ++  +++  Q PA+AITD   ++ A +F ++A AAG+
Sbjct: 2    SDSFVHLHVHTEYSMLDGAARLKDMFTEVSRQQMPAVAITDHGYMYGAYDFHKQATAAGV 61

Query: 68   QPIIGCQLDIDMQDNL-KMTNQGKTPF---------PTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIGC+  I  +  L K   +   P           +   + +    AEG   L  L S
Sbjct: 62   KPIIGCEAYIAPESRLLKQRVRWGEPHQKSDDVSGSGSYTHMTIWARNAEGLHNLFRLNS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            R  +     +  R+    + E  + GL+  TG  SG +         ++A K   T++++
Sbjct: 122  RASIEGHYIKWPRMDREIISE-HSAGLMATTGCPSGEVQTRLRLGQPELALKAAATYQEI 180

Query: 178  FGDRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG   Y       G +  R     +V +A    +  V TN+S +  E + E H  L+ V 
Sbjct: 181  FGPENYFCEIMDHGIEIERRVRDGLVDIARKLNMRFVVTNDSHYTYESERETHSALLCVQ 240

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSI-FSD-LPEALENTVEIARRC--SFILQVHAPI 291
             ++ V+          ++LK+  +M +I +SD   E  + T+ IA R   + +   H  +
Sbjct: 241  TASTVANPSFQFEGSGYFLKSADQMRAIDYSDAWREGCDTTLLIAERVDTTGMFPKHN-L 299

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +P +   E +     EE+  R + + G+E R   G   K      +R ++++E+ VI +M
Sbjct: 300  MPVYPTPEGE----TEESFFRAEVLRGMERRFPGGIDEK------HRTQVEYEIGVILQM 349

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DPL   L+FERFLNP+
Sbjct: 350  GFPSYFLVVADFIMWAKNNGIAVGPGRGSAAGSLIAYALGITDLDPLPHGLIFERFLNPE 409

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF   RR +VIRYV  K+G +R+AQI+T+G+++AKAA++D  R L  PY+ 
Sbjct: 410  RVSMPDIDIDFDDRRRADVIRYVTEKWGEDRIAQIVTYGTIKAKAAIKDSARVLGYPYAV 469

Query: 472  VDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
             DR+ K +P              DP HP      ++    R    +D  V ++++ ++ L
Sbjct: 470  GDRITKAMPPMVMGKDIPLPGIFDPNHP----RFSEAGEIRALYESDADVRKVIDTAKGL 525

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R A  HAAG+++   P+   +P++R     + +TQF+    E  GL+K DFLGL+ 
Sbjct: 526  EGLIRQAGVHAAGVIMSAEPIIDHIPVWRRDADGVIITQFDYPTCENLGLLKMDFLGLRN 585

Query: 579  LTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  ++ +  + RG+K+DL  +  DD  TY LL+   TLG+FQL+   +R  L  M+P
Sbjct: 586  LTVMDDAVRNVESNRGIKIDLLSLGLDDKTTYELLSRGDTLGVFQLDGGPLRSLLRLMRP 645

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVIIY 691
            D  EDI A+++LYRPGP+  ++   Y  RKNG+++I+ IHP     +D +L  T G+I+Y
Sbjct: 646  DNFEDISAVIALYRPGPMGANSHTNYALRKNGQQEIIPIHPELGTALDEVLGTTYGLIVY 705

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVM IAQ++ GYSL +AD+LRRAMGKK KE +DK+   F +G   NG S      +++
Sbjct: 706  QEQVMAIAQVVGGYSLGQADLLRRAMGKKKKEILDKEFAPFSAGMKANGYSDAAIKTLWD 765

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +L  F+DY FNK+H+AAY ++SY TA++K +YP E++AA +T   D+ +K   +  + R+
Sbjct: 766  ILVPFSDYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAALLTSVRDDKDKSAIYLNECRR 825

Query: 812  FNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFC 869
              I+++PP VN    D+   G++ I   LAAI+ VG      I      K P+ S  DF 
Sbjct: 826  MGIKVLPPDVNISDADYTAHGESEIRVGLAAIRNVGINVVESITRTRRTKSPYTSFPDFL 885

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             +V++   N+R +ESL+ AGA D FG++R  L++  +        V+K       ++FA 
Sbjct: 886  DKVEAVVCNKRTIESLIKAGAFDSFGHTRRGLVEKHEQAVDAVMAVKKKTAEGQFDLFAF 945

Query: 930  EKGTFSDKITLE-------KFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
              G   D   LE       +FS +  + +V   NE+ +LG Y S HPL   + +L     
Sbjct: 946  -GGDDEDGSPLETPGLGVGEFSEKEWDKAVLLSNEREMLGLYVSDHPLSGVEHVLAAKAD 1004

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  V    G  + +  ++ S Q+K T++G      T  +     E  FFP
Sbjct: 1005 TTVANLVDYPDGAVVTIGGIISSLQRKVTKQGKVWALTTIEDLEGGLEVMFFP 1057


>gi|193215617|ref|YP_001996816.1| DNA polymerase III subunit alpha [Chloroherpeton thalassium ATCC
            35110]
 gi|193089094|gb|ACF14369.1| DNA polymerase III, alpha subunit [Chloroherpeton thalassium ATCC
            35110]
          Length = 1190

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 363/1015 (35%), Positives = 566/1015 (55%), Gaps = 69/1015 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL  H+ YS+    +    +  +       A+ +TD +++F+  E    A    ++ I
Sbjct: 4    FIHLHTHTHYSMQSSTIMPGELFAECQKLDMAAVGVTDYSSMFNMPELFSYAKKHEVKLI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +L +       MT + +     +  ++LLV    GY+ L +++S        KQ  R
Sbjct: 64   IGAELFLVPG---AMTEKKEQ---VLYHLILLVKNETGYKNLCKILSAAARDGFYKQMPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               + +Q+   EGLI LT    G + +    +    A   +  +K LF D  Y+ +  H 
Sbjct: 118  ADFNLIQK-NAEGLICLTACREGELSQYILKDEIDKARDFVARYKNLFQDDFYIEMHSHN 176

Query: 191  GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D  R ++  + LA    + LVATN+  +L +ED +  D L A+ +   +S  +R R+ 
Sbjct: 177  APDDARLNEAKIALAKEFGIKLVATNDVHYLKKEDAQYQDALQALKNKQTLSSPNRNRLP 236

Query: 250  PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQKEE 307
             +H YLK   EM  +F +    L NT+EIA +C+F+     P LP F I  E ++    +
Sbjct: 237  TEHFYLKTPDEMARMFDNAQGELVNTLEIAEKCTFVFNDQQPHLPHFPIPSEFEN----D 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E  LR+    G + +      A G    + R+R+++EL++I +M ++ YFLIV+D I  +
Sbjct: 293  EAYLRHLTYEGAKKKYGD-LDAMGEKGAEVRERIEYELSIICKMGYATYFLIVSDLISAS 351

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++    VGPGRGS AGS+ AY   IT +DP+++ LLFERFLNP+R+SMPD DIDF    +
Sbjct: 352  REMGYSVGPGRGSAAGSIVAYLTNITQVDPIKYKLLFERFLNPERVSMPDIDIDFTPVGK 411

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
              V+ Y   KYG   VA++I  G+L AKAA+RDVGR L +    VD++ KL+P  P   +
Sbjct: 412  QRVLDYTIKKYGAASVAKVIAVGTLGAKAAIRDVGRVLDINLQTVDKIAKLVPGKPG--M 469

Query: 488  SLQAIADDSR-FREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            +L   AD  + F E   + +  + +L++ ++ LEG  R+ S HAA +V+ D P+ ++VP+
Sbjct: 470  TLSKAADQVKEFAELESSPEQKIQKLMKFAKALEGRARNVSMHAAAVVVTDGPVEEVVPL 529

Query: 546  YRDVRSDLP----------------------------VTQFNMKWIEKAGLIKFDFLGLK 577
            Y   + +                              VTQF+  WIEKAGL+K D+LGL+
Sbjct: 530  YVSNKIETEERRYIDEFDEKSEKEKGKGKSGDDQKQVVTQFDKDWIEKAGLLKIDYLGLE 589

Query: 578  TLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            TL ++ ++L  + +R GV +DL  +P DD + Y +       GIFQ ES GM+Q +  ++
Sbjct: 590  TLAVVDETLRLIQKRYGVTIDLESVPIDDKKAYKIFQEGKMAGIFQFESQGMQQYMMKLR 649

Query: 637  PDCIEDIIALVSLYRPGPID-------NIV-VYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            P  I DIIA+ +LYRPG ++       N V ++ +RKNG+EKI  +HP++  +L+ET GV
Sbjct: 650  PTVIGDIIAMSALYRPGALNARIDENRNAVDLFVDRKNGREKIEYMHPMLAEILEETYGV 709

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQVM ++Q++ G+SL++AD LR+AMGKK  E M K K+ F+ GA +  + K +A  
Sbjct: 710  IVYQEQVMLVSQVMGGFSLAKADNLRKAMGKKKPEIMAKFKDEFVEGAVEKSVDKAVATG 769

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            IF+L+A+FA YGFNKSH+AAY +++Y TA++K HY  EF+AA +  E  +  ++K    +
Sbjct: 770  IFDLMAEFAGYGFNKSHSAAYGILAYWTAYLKAHYTAEFMAAILNSEAGDTARMKHLTDE 829

Query: 809  ARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEA--SADKP 861
            A+   I I+PPS+N     F V     G   I    +AIK VG   AR I+ +     +P
Sbjct: 830  AKSMGIAILPPSINHSDALFMVEDIEKGKKAIRVGFSAIKHVG-GAAREIVRSRWRRKEP 888

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F  L D CS VD + +N++ LE L+ AGALD F  +R +L+ +L    +Y Q   K+ T 
Sbjct: 889  FADLFDLCSTVDLRVVNKKALECLIEAGALDEFDENRAKLIGNLPKAVEYGQKRNKSATL 948

Query: 922  KHENIFAHEKGTFSDKI----TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              E  F +++  F+DK      +E+F     + + E E+ ++GFY S HPL+ Y+
Sbjct: 949  GQEGFF-NDENFFADKADAYPEMEEFEPWPDAEKLEREKNLIGFYVSTHPLEPYR 1002


>gi|329944570|ref|ZP_08292710.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 170
            str. F0386]
 gi|328530123|gb|EGF57006.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 170
            str. F0386]
          Length = 1197

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 371/1077 (34%), Positives = 581/1077 (53%), Gaps = 70/1077 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YS+L+GA  + + + +     QPA+AITD   +F A EF   A A GI+PI
Sbjct: 16   FVHLHVHTDYSMLDGAGKVKDYVAEAKRLGQPALAITDHGYMFGAYEFYAAAKAVGIKPI 75

Query: 71   IGCQLDI----------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            IG +  +                + Q    ++ +G     +   + LL    EG   L+ 
Sbjct: 76   IGVEAYMTPGTSRFDKTRIFWGDESQRGDDVSARG-----SYTHMTLLSRNNEGLHNLMR 130

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            + S   L  Q  ++ RI    L   G  GLI  TG  S  +           A +     
Sbjct: 131  MDSFASLEGQWGKAPRIDRELLSRYGG-GLIGTTGCPSSEVQTRLRLGQWDEALRAAGEL 189

Query: 175  KKLFGDRL-YVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG    YV L  H      R ++ +++LA     PL+ATN+S ++  ED    D ++
Sbjct: 190  QDIFGKEFFYVELMDHGLEIEQRVTKDLLRLAQEIGAPLLATNDSHYVRPEDRTIQDAML 249

Query: 233  AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---H 288
             +   +V+S  DR R   D +YL+  +EM  +FS++P A +NT+ +A +C    +     
Sbjct: 250  CINSGSVLSDPDRFRFDGDTYYLRPGAEMRRLFSEMPHACDNTLLVAEQCDVHFRTVDEG 309

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
            A  +P F   E +     +E+    +   G++ R        G   +D R++ ++E++VI
Sbjct: 310  ASFMPAFPVPEGE----TDESWFIKECWRGMDRRF------NGDIPEDCRKQAEYEISVI 359

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VAD+I WAK + I VGPGRGSGAGS+ AYA+ IT+++PLR  L+FERFL
Sbjct: 360  TQMGFPGYFLVVADYINWAKAHGIRVGPGRGSGAGSMVAYAMGITELNPLRHGLIFERFL 419

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DF + RRDEVI YV+ KYG +R++Q++T+G ++AK +L+D  R +  P
Sbjct: 420  NPERISMPDIDVDFDERRRDEVIEYVREKYGADRISQVVTYGVIKAKQSLKDSSRVMGYP 479

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAI--ADDSR------FREARLADPSVDRLLEISQKLE 519
            Y+  DRL K +P       +S++ I   DD R      FR+    DP   +++++++ LE
Sbjct: 480  YAVGDRLTKAMPPSVQGKDISIKGIFNPDDERYGEAEEFRKLHAEDPDAQKIVDLAKGLE 539

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R    HA  +++    L+ ++PM + ++    +TQF+    E  GL+K DFLGL+ L
Sbjct: 540  GMTRQWGVHACAVIMSSATLTDIIPMMQRLQDGAVITQFDYPTCEHLGLLKMDFLGLRNL 599

Query: 580  TLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +LD +   G   +D+  +  DD  TY LL+   TLG+FQL+  GMR  L  M+PD
Sbjct: 600  TVISDALDNIVANGKPALDIDHVELDDRGTYELLSRGETLGVFQLDGGGMRTLLRLMKPD 659

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVIIYQ 692
              EDI A+ +LYRPGP+  ++   Y  RKNG +++V IHP     ++P+L  T G+I+YQ
Sbjct: 660  NFEDISAVGALYRPGPMGAESHTNYALRKNGLQEVVPIHPELKEALEPILGTTHGLIVYQ 719

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM+IA  L+G+S+ +AD LR+AMGKK  + + K    F +G  + G SK     ++++
Sbjct: 720  EQVMKIATDLAGFSMGKADALRKAMGKKKMDILAKMFVEFEAGMVQAGFSKESVKTLWDV 779

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA Y FNK+H+AAY V+SY TA++K HYP E++AA +T + DN +K+  +  + R  
Sbjct: 780  VVPFAKYAFNKAHSAAYGVVSYWTAYLKAHYPTEYMAALLTSQKDNKDKLAVYLGECRHM 839

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSR 871
             I ++PP VN     F   D  + + L+A++ VG      I+ A  +K  F S EDF  +
Sbjct: 840  GITVLPPDVNASRAQFSAVDEDVRFGLSAVRNVGINVVDAIVAARREKGEFTSFEDFLDK 899

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V +   N+R ++SL+ AGA D  G++R  L    ++       V++N      ++FA   
Sbjct: 900  VPAVVCNKRTIDSLIKAGAFDSLGHTRRSLQACHEDFVDEVIGVKRNEAAGQFDLFASLT 959

Query: 932  GTFS--DKITLEKFSVENSSV----------RFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            G     D        V +S V          +   E+ +LG Y S HPL   + +L K+ 
Sbjct: 960  GGSDGEDSSPFGNGPVFSSDVPNLPEWDKKDKLAYERDMLGLYVSDHPLMGLEGLLGKLA 1019

Query: 980  ---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               I    E+     G  + +A ++ S  +K T++G+        + A   E  FFP
Sbjct: 1020 DKEISELHENDELPDGAMVSIAGLITSLTRKTTKQGNLWAIAQIEDLAGSIEVLFFP 1076


>gi|86141808|ref|ZP_01060332.1| DNA polymerase III, alpha subunit [Leeuwenhoekiella blandensis
            MED217]
 gi|85831371|gb|EAQ49827.1| DNA polymerase III, alpha subunit [Leeuwenhoekiella blandensis
            MED217]
          Length = 1460

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 367/1024 (35%), Positives = 560/1024 (54%), Gaps = 79/1024 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA------ 64
            FVHL  HS +S+L+   S+++++      + PA+ ITD  N+  A  F +   A      
Sbjct: 261  FVHLHNHSQFSILQSTASVHDLVAAAKKHKMPAVGITDMGNMMGAFHFVKALTAHNKAAQ 320

Query: 65   --------AG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                    AG       I+PI+G +L++  QD+   TN  K+       IV L     GY
Sbjct: 321  KKNDELLEAGEEPTETIIKPIVGAELNV-CQDH---TN--KSQKDNGYQIVFLAKNKRGY 374

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L ++ S  Y    G   V      + E   E +I+LTG   G +         + AE+
Sbjct: 375  HNLAKMASLAYT--DGFYYVPRIDRKIVERYKEDIIVLTGNLYGEVPSKVLNVGEKQAEE 432

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             LL +K+ FGD LY+ + RH   D  R +Q +++ +  H++ LVATNN+ ++ +ED  AH
Sbjct: 433  ALLWWKETFGDDLYIEVMRHGQEDEDRVNQTLIEFSKKHDVKLVATNNTFYIDKEDAPAH 492

Query: 229  DVLMAVAHS-TVVSQKDRPRV------TPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            D+L+ V     V + K R R         ++Y K+  EM ++F+DLPEA+ N  EI  + 
Sbjct: 493  DILLCVKDGEKVATPKGRGRGYRFGLDNEEYYFKSADEMKALFTDLPEAISNVDEIVDKV 552

Query: 282  SFILQVHAPILPRF-------IEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIAKGYH 333
               +     +LP F        E++  D  K  EN+ L++    G   R  +        
Sbjct: 553  EAFVLARDVLLPAFTIPEEFQFEEDKQDGGKRGENKYLKHITFEGARQRYPE-------I 605

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              D  +RL+FEL+VI    + GYFLIV DFI+ A+   + VGPGRGS AGS  AY L IT
Sbjct: 606  TPDIEERLNFELSVIENTGYPGYFLIVEDFIREARNMGVSVGPGRGSAAGSAVAYCLGIT 665

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            +IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV +KYG  +VAQIIT+G++ 
Sbjct: 666  NIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIDKYGANQVAQIITYGTMA 725

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPN-DPAHPVSLQAIAD-DSRFREARLADPSVDRL 511
            AK+++RD  R L +P S  DR+ KLIPN      +  Q+ AD   +FR   L    V+ L
Sbjct: 726  AKSSIRDTARVLDLPLSDADRIAKLIPNMSKLAKIFGQSEADLKKKFRSEDLV--KVNEL 783

Query: 512  LEISQ-------------KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
            L +++             +LEG  R+   HA G++I    ++  VP+     SDL VTQF
Sbjct: 784  LNLAEGDDLEGQTLRQARQLEGSVRNTGIHACGVIITPDDITNFVPVSIAKDSDLYVTQF 843

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGT 617
            +   +E+AGL+K DFLGLKTLTL++ ++  +  + G+ +D    P DD +TY L     T
Sbjct: 844  DNSVVEEAGLLKMDFLGLKTLTLIKDTVKLVKHKHGIDLDPDSFPLDDQKTYELFQRGDT 903

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +GIFQ ES GM++ ++ ++P   ED+IA+ +LYRPGP++ I  +  RK+G+E+I    P 
Sbjct: 904  VGIFQYESPGMQKHMQALKPTVFEDLIAMNALYRPGPMEYIPSFIARKHGEEEIQYDLPA 963

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  L+ET G+ +YQEQVM ++Q L+G+S  +ADVLR+AMGKKI   ++K K +F+ G  
Sbjct: 964  MEEYLEETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKIFALLEKLKPQFLDGGE 1023

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG  + I   I++    FA Y FNKSH+  YA I+YQTA+ K HYP E++AA ++  M+
Sbjct: 1024 KNGHDRKILEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYCKAHYPAEYMAAVLSNNMN 1083

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA 856
            +++++  F ++ ++  ++++ P VN     F V D   + + + A+KGVG    + I+E 
Sbjct: 1084 DIKQVTFFMEECKRMGLEVLGPDVNESFRKFTVNDRGAVRFGMGAVKGVGANAVKTIVEN 1143

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNI 908
              D P+ S+ D   R+D +  N++  ESL  AG  D F    R Q  +        L+  
Sbjct: 1144 REDGPYRSVFDLAKRIDLRAANKKAFESLALAGGFDSFMATHRAQYFKDEGDGITFLEKA 1203

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             KY    ++N  +   ++F         +  +       +  +   E+ V+G Y SGHPL
Sbjct: 1204 VKYGAKFQENENSAQVSLFGEASEVQIPEPVVPPCEEWGTMEKLRREKEVVGIYISGHPL 1263

Query: 969  DVYK 972
            D +K
Sbjct: 1264 DDFK 1267


>gi|149177980|ref|ZP_01856577.1| DNA polymerase III alpha subunit [Planctomyces maris DSM 8797]
 gi|148843173|gb|EDL57539.1| DNA polymerase III alpha subunit [Planctomyces maris DSM 8797]
          Length = 1154

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 363/1007 (36%), Positives = 572/1007 (56%), Gaps = 31/1007 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L+GA  +  ++ K+      ++AITD  NL+ A++F Q   +  + PI+G +  I  + 
Sbjct: 1    MLDGASRIPEMVSKVKEAGMNSLAITDHGNLYGAMDFYQHCRSQDVNPILGLEAYIAPRS 60

Query: 82   NLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG 140
              +   +G +        + LL    +G++ LI+L S  YL  +G          + E  
Sbjct: 61   RFE---KGASRMKEASFHLTLLAQNRQGFENLIKLSSASYL--EGFYYKPRIDKEILEAH 115

Query: 141  TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRES-- 198
            +EGLI+LTG ++G +         + AEK    ++K+FGDR+Y+ +Q + G +  R+   
Sbjct: 116  SEGLILLTGCAAGELSHHILGEDWEEAEKLCAWYEKVFGDRVYMEIQ-NAGLEIQRQCLE 174

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY-LKNR 257
              V LA    LPLVATN++ ++ ++D EA DVL+ V+   VVS + R ++T D + ++ +
Sbjct: 175  GTVDLANRMGLPLVATNDAHYVDQKDAEAQDVLLCVSTRAVVSDEKRMKMTGDQFFVRTQ 234

Query: 258  SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
             EM + F  L +A+  T E+A R   I        P F  +  D++   +   LR     
Sbjct: 235  DEMYNAFPGLEDAVARTQELAERVD-IQMSDKKFYPVF--QPPDNLT--DTQYLRKLCEE 289

Query: 318  GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
             L ++            Q +  RLD EL VI +M +S YFLIV DF+Q+A+   IP    
Sbjct: 290  RLPIKYGDEL------TQAHWDRLDLELGVIEQMGYSSYFLIVWDFVQFAENEGIPC-TA 342

Query: 378  RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
            RGS  G++ A+ L ++ + PL++ LLFERFL+P R   PD DIDFC+DRR  VI Y + K
Sbjct: 343  RGSACGAIVAFLLGMSQVCPLKYDLLFERFLDPSRTEPPDIDIDFCRDRRQLVIDYTKQK 402

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            YG + VAQI TFG+L+AKAA+RDVGRAL +P ++V+ + K+IP      +   A+ +   
Sbjct: 403  YGEKSVAQIGTFGTLKAKAAIRDVGRALGVPLARVNEIAKMIPESLGIKLK-DALKESPD 461

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
             + A   D  + RLL+++ +LEGL R A THAAG+V+ D PLS++VP+         +TQ
Sbjct: 462  LQSAYDQDSEIKRLLDLAMQLEGLCRSAGTHAAGVVVADLPLSEVVPLQSITGKTDIITQ 521

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKG 616
            ++   +E  GL+K DFLGL+ LT+L K++  + + RG+ ++   +P DD ET+ LL    
Sbjct: 522  WDGPTVESVGLLKMDFLGLRNLTILDKAVQNVKKHRGIDINPHKLPLDDQETFELLQRGE 581

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSI 674
            T GIFQLES GMR  L  M+PD  EDIIA  +LYRPGP++  +V  Y + KN +  I  +
Sbjct: 582  TKGIFQLESGGMRDLLTKMKPDKFEDIIATSALYRPGPLEGGMVMQYVDVKNNRIPIPKV 641

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            HP++D +L ET GV++YQEQVM+I   + G  LS A    +A+ KK  + +   +++++ 
Sbjct: 642  HPIVDEILDETYGVMVYQEQVMRILNRVGGIELSAAYRCIKAISKKKLKIIADFRDQYLE 701

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            GA K+G+   +A ++FE++ KFA YGFNKSH+ AY  ++Y TA++K HYP EF+AA ++ 
Sbjct: 702  GAKKSGVDVKLATDLFEMIEKFAGYGFNKSHSTAYGGVAYATAYLKAHYPKEFMAALLSC 761

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
             M++ E+I +   D R+  I+++PP +N   V+F V   +I + + AIKGVG      ++
Sbjct: 762  GMESHERITEHVDDCRRMKIEVLPPDINRSEVEFSVDGEKIRFGMGAIKGVGEQVLEAVV 821

Query: 855  -EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
             E   + PF SL + C RVD K LN+  LE+L+ AGAL+  G ++ QL+ +++   + A 
Sbjct: 822  KEREENGPFTSLYNLCERVDPKTLNKSTLETLIKAGALNSLGGNQAQLMLTVERAVQSAL 881

Query: 914  WVEKNRTNKHENIFA----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             + ++R    +++F      E+    ++ +L +      + +   E+ V GFY + HPL 
Sbjct: 882  NIHRDRARGQKSLFGDETVDEETGAEEEASLPEAEDWPRAQKLGAEKEVFGFYLTSHPLA 941

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
                 L K       E         + LA MV S +   T+K S+ G
Sbjct: 942  EMGTSLTKYAQNQTNELAEMDDRVEVILAGMVSSIKMAATKKPSKNG 988


>gi|313847630|emb|CBY16618.1| putative DNA polymerase III alpha subunit [Chlamydophila psittaci
            RD1]
          Length = 1248

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 375/1078 (34%), Positives = 592/1078 (54%), Gaps = 62/1078 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+ + + K    Q P++A+TD  NL+ A+EF ++     I+P
Sbjct: 8    TWIPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECQQNDIKP 67

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +          + K+       ++LL     GY+ L  L+S +   +      
Sbjct: 68   IIGCEIYVAPSSRFDKKKEKKSRVAN--HLILLCKNELGYRNLC-LLSSLAFTEGFYYFP 124

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +   EGLI L+   SG + +A    S +  EK L  ++ LFG+  Y  +Q H
Sbjct: 125  RIDRDLLSQ-HAEGLICLSACLSGSVAQAAL-ESEEALEKDLRWYQNLFGEDFYSEIQLH 182

Query: 190  R----------------GYDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +                 Y ++ +SQ      V+  +    +  VATN+  ++  +D+ A
Sbjct: 183  KMSEEKIASLGEEWLKHEYYQFIDSQTKVNQAVLDASKRLGIRSVATNDIHYIHADDWLA 242

Query: 228  HDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+ V           ++ + + K +   + ++Y K+  EM  +F+D PE + NT+E+
Sbjct: 243  HEILLNVQLGETIRIAKQNTYIPNPKRKTFRSREYYFKSPEEMAMLFADHPETITNTLEV 302

Query: 278  ARRCSFILQV---HAPI-LPRFIEKECDDIQKEEENE----LRNKAVAGLEVRLAQ---G 326
            A +C+  L +   H PI +P F++ + +  ++E        LR     GL  +       
Sbjct: 303  ADKCNLELNLSSKHYPIYVPDFLKDKPNYTEEERYAASSAFLRELCEKGLSTKYTPEKLA 362

Query: 327  AIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
             I+K +  +D     ++RL+ E+++I       Y LIV D I WAK N IPVGPGRGSGA
Sbjct: 363  HISKKFPDRDPLELVKERLEMEMSIIIPKGMCDYLLIVWDIIYWAKDNGIPVGPGRGSGA 422

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + 
Sbjct: 423  GSVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDN 482

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            VAQIITFG+++AK A++DVGR L +  S+V+ + K IP    +    +A+  D    E  
Sbjct: 483  VAQIITFGTMKAKMAVKDVGRTLDVALSKVNHIAKHIPE--LNTTLAKALETDPHLNELY 540

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMK 561
              D    ++++++ +LEG  R+   HAAG++I GDR L+  +P+     S +  TQF+MK
Sbjct: 541  TNDAEAAQVIDMAMRLEGSIRNTGVHAAGVIICGDR-LTNHIPICISKDSTMITTQFSMK 599

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620
             +E  G++K DFLGLKTLT +  ++  + ++ G  ++++ +P DD  T+ LL    T+GI
Sbjct: 600  PVESVGMLKVDFLGLKTLTSIHIAIRAIEKKTGKLLEMASLPLDDKTTFALLHQGKTMGI 659

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ+ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++ 
Sbjct: 660  FQMESKGMQELAKNLRPDSFEEIIAIGALYRPGPMDMIPSFINRKHGKEIIEYDHPLMES 719

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  ++M K++ RF   A KNG
Sbjct: 720  ILKETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDIDQMLKERTRFCERACKNG 779

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            I   +A  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E
Sbjct: 780  IDADLATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPREWLAALLTSDSDDIE 839

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
            K+ K   +A   +I I+PP +N    DF   D  I +++ AI+G+G      I+E     
Sbjct: 840  KVGKLIHEAHSMDICILPPDINESGTDFVATDKGIRFAMGAIRGIGKGLVESIIEEREKH 899

Query: 861  -PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P+ S++DF  R D KK+ ++  E+L+ AG  D F   R     +L+++       +K  
Sbjct: 900  GPYQSIQDFIQRSDLKKVTKKHTENLIDAGCFDVFEPDRDVAQATLESLYDSISKEKKEA 959

Query: 920  TNKHENIFAHEKGTFSDKITLEKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                   F+         ITL   +     +     + E+ +LG Y + HP+D  K IL 
Sbjct: 960  ATGVMTFFSLNTMNQKHPITLTPAADVVRRSKKEILKKEKELLGIYLTEHPMDAVKDILP 1019

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033
            ++ +    E      G  IR   ++     + + KG R    +  S+    YE   +P
Sbjct: 1020 RLSVVSPGEFDNLPHGAVIRTIFIIDKVTTRISSKGQRKFALLRVSDGVDSYELPIWP 1077


>gi|255530778|ref|YP_003091150.1| DNA polymerase III subunit alpha [Pedobacter heparinus DSM 2366]
 gi|255343762|gb|ACU03088.1| DNA polymerase III, alpha subunit [Pedobacter heparinus DSM 2366]
          Length = 1476

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 367/1042 (35%), Positives = 571/1042 (54%), Gaps = 95/1042 (9%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-------- 58
            K  +FVHL  H+ +S+L+  +++ +++   AA + PA+AITD  N+  A  F        
Sbjct: 257  KDAAFVHLHNHTQFSVLQSTINIPSLIKATAAHKMPAVAITDHANMMGAFHFVSQVLNHN 316

Query: 59   -------------SQKACAAGIQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVS 104
                          + A    I+PIIGC+  + +  ++ K  + G         +V L  
Sbjct: 317  KGVEARNAAAIEKGETAEEQTIKPIIGCEFFVCENHEDKKRKDDGY-------QVVFLAK 369

Query: 105  TAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS 164
               GY  L ++ S  Y   +G   +      + E   E +++L+G   G I         
Sbjct: 370  NKAGYHNLAKMSSIAYT--RGFYYIPRIDKAIVEQYKEDILVLSGNLYGEISSKLLNMGE 427

Query: 165  QVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEE 223
            + AE+ LL +K  FGD  Y+ L RH   D     + +V LA  HE+ L+ATNN+ +++++
Sbjct: 428  KQAEEALLWWKSQFGDDFYIELMRHNQEDEDIVNATLVNLAKKHEVKLIATNNTYYINKK 487

Query: 224  DYEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVE 276
            D  AHD+L+ V      +T + +    R      ++Y K+  EM S+F+DLPEA+ N  E
Sbjct: 488  DANAHDILLCVKEGEKQATPIGRGRGYRFGLPNQEYYFKSPEEMKSLFADLPEAISNIQE 547

Query: 277  IARRCSFILQVHAPILPRF-------IEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAI 328
            +  +          +LP+F       ++++ +D  K  EN+ LR+    G + R      
Sbjct: 548  VVDKIEAYKLAREVLLPKFDIPEEFLVKEDEEDGGKRGENKFLRHLTYVGAKKRY----- 602

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
              G    D  +RLDFEL  I +  + GYFLIV DFI  A+  ++ VGPGRGS AGS  AY
Sbjct: 603  --GEITDDIAERLDFELQTIEKTGYPGYFLIVQDFIAEARNLDVSVGPGRGSAAGSAVAY 660

Query: 389  ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
             L IT+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV  KYG  +VAQIIT
Sbjct: 661  CLGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVIKKYGSNQVAQIIT 720

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLADP 506
            +G++ AK++++D  R L +P  + +++ KLIPN     + L  I   D+   +EA  AD 
Sbjct: 721  YGTMAAKSSVKDTARVLDLPLFEAEKIAKLIPN-----MKLAKIFTLDEKSLKEALRAD- 774

Query: 507  SVDRLLEI----------------SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
              +++LE+                +Q LEG  R+   HA G++I    ++  VP+     
Sbjct: 775  EYEKILELKALAGAKDLGAKTLEQAQILEGSLRNTGIHACGVIITPSDITNFVPVATAKD 834

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
            SDL VTQF+   +E AGL+K DFLGLKTLTL++ ++  +  R  + +D    P DD  TY
Sbjct: 835  SDLYVTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKLVKSRHNIDLDPDNFPIDDERTY 894

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T+GIFQ ES+GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RKNG+E
Sbjct: 895  ELFQRGETIGIFQYESTGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEE 954

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +I       +  LKET G+ +YQEQVM ++Q L+G++  EADVLR+AMGKK K+ +DK K
Sbjct: 955  EIKYDLDACEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQKDVLDKMK 1014

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI  A++ G    I   I++    FA Y FNKSH+  YA I+YQTA++K HYP E++A
Sbjct: 1015 PKFIKQAAEKGHDAVILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMA 1074

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTT 848
            A ++  M +++++  F ++ +Q  +Q++ P VN   + F V     + + L+ IKGVG  
Sbjct: 1075 AVLSNNMSDIKQVAFFMEECKQMGVQVLGPDVNESDIKFSVNAQGEVRFGLSGIKGVGEK 1134

Query: 849  TARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL------ 901
                I+E   +K  +  L DF  R +++ +N++  ES V++GA D FGY R Q       
Sbjct: 1135 AVESIIEDRLEKGMYKDLYDFARRSNTRTVNKKAYESFVYSGAFDAFGYHRAQYFFVGIN 1194

Query: 902  --LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV--ENSSV-RFENEQ 956
              +  ++ + KYA   + N ++   ++F    G+ +D I      V  E S + + + E+
Sbjct: 1195 DKMNGIEKVIKYANDFQNNESSSQSSLFG---GSVADLILEPALPVAPEWSLIDKLKYEK 1251

Query: 957  RVLGFYFSGHPLDVYKPILRKM 978
              +G + SGHPLD YK  L++ 
Sbjct: 1252 DAIGIFLSGHPLDNYKLELKEF 1273


>gi|327439235|dbj|BAK15600.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046]
          Length = 1024

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 367/1029 (35%), Positives = 582/1029 (56%), Gaps = 53/1029 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V+ QV +S  LL+  + ++ ++  +   +  + AI +T  L+  L F  +   AGI P++
Sbjct: 3    VYPQVRTSADLLKSTIRIDELIPFLHHQKAKSCAIVNTK-LYGLLPFWFEMKRAGIHPVV 61

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  +       L++T +   P      +VL   T EGY+ L+++ S + +    +    I
Sbjct: 62   GLTI------QLELTEEQSLP------LVLYAKTNEGYRNLLKISSSIAI----RPEQTI 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             L WL   G     M+         +A +    Q+AE  L  F K + D +Y+ + R   
Sbjct: 106  PLRWLLAYGKGIAFMIPALE----QQAIWLQ--QMAEPVLAEFMKAYPDEVYIGISRLSD 159

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                 ES  VQLA  + LP+VAT+ SLF +EED+ A++V  A+ H+ V           +
Sbjct: 160  TSSL-ESSAVQLAEKNALPIVATHESLFFNEEDFFAYEVAQAI-HTGVKLNDAVQSNKQE 217

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            ++L    +    F D  + L  +  +   C   L  +   +P+F   E +      EN L
Sbjct: 218  NHLLTAEQWQQKFHDQQQWLVQSENLLLSCQIELNTNNVYMPKFPVGEGET----AENLL 273

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            + + + GL+ RL    +        Y +R+++EL+VI  M +S YFLIVADF+Q+A++  
Sbjct: 274  QQQVMTGLQRRLNTNTLPG-----HYVERMNYELHVIQSMGYSDYFLIVADFMQFAREAQ 328

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I  GPGRGS A S+ A+AL IT +DPL++ LLFERFLNP+R+++PD DIDF   RR EVI
Sbjct: 329  ILTGPGRGSSASSLVAFALEITQVDPLQYDLLFERFLNPERITLPDIDIDFLDTRRHEVI 388

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YV  KYG + VAQIITFG+L AKA  RDV R        ++ + KLIPN P   +  +A
Sbjct: 389  QYVAKKYGKQYVAQIITFGTLSAKAVARDVARMFNFESEALEMISKLIPNKPGITLK-EA 447

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
             A     R    A+P   +  + S +LEGL R+ASTHAAG+V+   PL  +VP+  +   
Sbjct: 448  YAMSENLRAWITAEPIRQKWFQTSLRLEGLPRNASTHAAGVVLSPVPLVDVVPI-EEGHD 506

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ---KSLDFLAQRGVKVDLSLIPFDDHET 608
             + +TQ+ M+ +E+ GL+K DFLGL+ LT+L+   KS+ F   R  +++ + IP +D +T
Sbjct: 507  GIFLTQWPMQEVEQNGLLKIDFLGLRNLTILEQIRKSIQFTHNR--QINFNHIPLNDEKT 564

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL    T GIFQLES GM+ AL  ++P    DI+A+ +LYRPGP++ I +Y  RK+ K
Sbjct: 565  FELLQNGDTNGIFQLESDGMKNALREIKPTHFLDIVAVNALYRPGPMEFIPMYARRKHKK 624

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E+++  HP + P+L+ET GVIIYQEQ+M+IA +++G+S  +AD+LRRA+ KK ++ +++Q
Sbjct: 625  EQVIMPHPHLTPILEETYGVIIYQEQIMRIANVMAGFSFGQADLLRRAVSKKKRDVLEQQ 684

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  F+ GA   G ++  A  ++ L+ +FADYGF KSHA AY+VISYQ A++K +YPV F 
Sbjct: 685  RASFVKGALTKGYTQQAAEEVYALIVRFADYGFPKSHAVAYSVISYQMAYLKANYPVNFY 744

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            AA +T    N +K+ +   +A+   I+I+PPS+N     FKV   +I +SL+AI+GV   
Sbjct: 745  AALLTNATGNPDKLAQILMEAKAKGIEILPPSINRSMRHFKVESGKIRFSLSAIRGVPQP 804

Query: 849  TARHIMEASAD--KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
              + ++ A  +  KPFDS+ D    + +   NR+++E L+ AGALD FG  R  LL +++
Sbjct: 805  FMQKLLLAREERQKPFDSIFDLAVTLTTANFNRKIIEPLIKAGALDEFGKDRATLLATIE 864

Query: 907  NIQKYAQWVEKNRTNKHEN-IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              QK A +V     +  E  + A  K  +S+   + +       ++ + E+ VLGFY S 
Sbjct: 865  GAQKQADFVRPGGDDLFEGALLAFGKPKYSETSPIPE------KIKLQYEKDVLGFYLSD 918

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            HP+   +    +  +    +++A ++ N  +++   V   +Q +T++G  + +V   +  
Sbjct: 919  HPIVKLRSQFPE--VTATVQTLAQLKDNAFVKIIGQVREMRQLRTKRGELMAFVQMEDEY 976

Query: 1025 KEYEANFFP 1033
                   FP
Sbjct: 977  GTVSLTLFP 985


>gi|228471624|ref|ZP_04056398.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC
            33624]
 gi|228277043|gb|EEK15729.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC
            33624]
          Length = 1484

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 375/1083 (34%), Positives = 577/1083 (53%), Gaps = 89/1083 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            L +S  F HL  HS +S+L+   S++++++  A +Q PA+A+TD  N+  A  F+++   
Sbjct: 250  LLQSAPFAHLHNHSQHSVLQSTASISDLVNAAAKEQMPAVALTDHGNMMGAFHFTKEVAK 309

Query: 65   AG---------------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
                                   ++PIIGC+  +  +++L  T +          IVLL 
Sbjct: 310  YNKEAKAKNARAQEEGNAPTHTLLKPIIGCEFYV-CENHLDKTKKDNGY-----QIVLLA 363

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
               EGYQ LI++ S  Y   +G   V RI    +Q    + +I L+G   G I       
Sbjct: 364  KNKEGYQNLIKMASIAYT--EGFYYVPRIDKEIVQRYKDQ-VIALSGNLQGEIPSKILNQ 420

Query: 163  SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLS 221
             ++ AE+ LL +K+LF D  Y+ L RH   D  R + V ++LA  H + LVATNN+ +++
Sbjct: 421  GNRQAEEALLWWKELFQDDFYIELMRHGQEDENRANTVLIELAKKHAIKLVATNNTYYIN 480

Query: 222  EEDYEAHDVLMAVA----HSTVVSQKDRPR---VTPDHYLKNRSEMVSIFSDLPEALENT 274
             +D  AHD+L+ V      +T + Q    R      ++Y K+  +M  +F D+PEA+ + 
Sbjct: 481  PKDANAHDILLCVKDGEKQATSIGQGRGFRNGLPNEEYYFKSSEQMKELFKDIPEAILSI 540

Query: 275  VEIARRCSFILQVHAPILPRF-----IEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAI 328
             EI  + +        +LP+F      + E D   K+ EN+ LR+    G E R  +   
Sbjct: 541  QEIIDKITPYELARDILLPKFSIPKEFQVEDDPTGKKGENKYLRHLTYIGAEKRYKE--- 597

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                   + R+R+DFEL++I +  + GYFLIV DFI  A+   + VGPGRGS AGS  AY
Sbjct: 598  ----LTDEIRERIDFELSIIEKTGYPGYFLIVEDFITAARNMGVSVGPGRGSAAGSAVAY 653

Query: 389  ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
             L IT+IDP+ + LLFERFLNPDR+SMPD DIDF  D R  V+ YV  KYG  +VAQI T
Sbjct: 654  CLGITNIDPIAYDLLFERFLNPDRVSMPDIDIDFEDDGRGRVLDYVIGKYGANQVAQIST 713

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD--DSRFREARLAD- 505
            +G++ AK+++RD  R L +P    D++ KL+PN     +SL+ I    D   +E   +D 
Sbjct: 714  YGTMAAKSSIRDTARVLDLPLKDADQIAKLVPN-----ISLKKIFSLPDEELKEKVGSDF 768

Query: 506  PSVDRLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
            P V  L +I+Q              LEG  R+   HA G++I    ++  VP+     SD
Sbjct: 769  PKVTELKKIAQGHDLAAKTVQQACILEGSVRNTGIHACGVIITPDDITNFVPVMLAKDSD 828

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611
            L VTQF+   +E AGL+K DFLGLKTLT+L+ ++  + +R  + +D+  IP DD  TY L
Sbjct: 829  LFVTQFDNSVVESAGLLKMDFLGLKTLTILKDAVSLIQKRHNITLDIEEIPLDDVPTYEL 888

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                 T+GIFQ ES GM++ +  ++P    D+IA+ +LYRPGP+D I  + +RK+GKE I
Sbjct: 889  FQRGETIGIFQYESPGMQKHMRELKPTVFGDLIAMNALYRPGPMDYIPSFIHRKHGKEPI 948

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
                  ++  LK+T G+ +YQEQVM ++Q L+G++  EAD LR+AMGKK+K+ + + K +
Sbjct: 949  TYDLADMEEYLKDTYGITVYQEQVMLLSQKLAGFTKGEADKLRKAMGKKLKDVLAEMKPK 1008

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            FI G  K G        I++    FA Y FNKSH+  YA I+YQTA++K +YP EF+AA 
Sbjct: 1009 FIEGGGKKGHPAETLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKANYPAEFMAAV 1068

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTA 850
            ++  M++++ I  F  +  +  I+++ P VN     F V  +  I + + A+KG+G    
Sbjct: 1069 LSNNMNDIKSISFFLSECHRMGIKVLSPDVNESEYKFTVNKEGAIRFGMGAVKGLGKAAV 1128

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS----- 904
              I+E     P+ S+ D   R+D K  N++  ESLV AG  D F    R Q         
Sbjct: 1129 DTIVETRKSGPYKSVFDMVKRIDLKSANKKAFESLVLAGGFDSFPEVHRAQFFHQEPSEN 1188

Query: 905  ---LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               L+ I +Y    +++  +   ++F     T   +  + K    +   +   E+ V+G 
Sbjct: 1189 MVFLEKILRYGAKAQESAKSIQLSLFGDSPETQFPEPKMPKTEEWSPMEKLHREKEVVGI 1248

Query: 962  YFSGHPLDVYKPILRKMGIK---GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            Y SGHPLD++   L+ +  K      E +       +R   ++   + K ++ G   GW 
Sbjct: 1249 YISGHPLDIFHYQLKYLCNKEVIELAEGIERFENQEVRFGGIITKIEHKTSKTGK--GWG 1306

Query: 1019 TFS 1021
             F+
Sbjct: 1307 LFT 1309


>gi|15618576|ref|NP_224862.1| DNA polymerase III subunit alpha [Chlamydophila pneumoniae CWL029]
 gi|15836198|ref|NP_300722.1| DNA polymerase III subunit alpha [Chlamydophila pneumoniae J138]
 gi|16752374|ref|NP_444633.1| DNA polymerase III subunit alpha [Chlamydophila pneumoniae AR39]
 gi|33242023|ref|NP_876964.1| DNA polymerase III subunit alpha [Chlamydophila pneumoniae TW-183]
 gi|14194705|sp|Q9Z7N8|DPO3A_CHLPN RecName: Full=DNA polymerase III subunit alpha
 gi|4376966|gb|AAD18805.1| DNA Polymerase III Alpha [Chlamydophila pneumoniae CWL029]
 gi|7189016|gb|AAF37967.1| DNA polymerase III, alpha subunit [Chlamydophila pneumoniae AR39]
 gi|8979038|dbj|BAA98873.1| DNA polymerase III alpha [Chlamydophila pneumoniae J138]
 gi|33236533|gb|AAP98621.1| DNA-directed DNA polymerase III alpha chain [Chlamydophila pneumoniae
            TW-183]
          Length = 1240

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 370/1083 (34%), Positives = 590/1083 (54%), Gaps = 72/1083 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQ---PAIAITDTNNLFSALEFSQKACAAG 66
            +++ L  HS YS+L+   ++++I D +A  Q+   PA+A+TD  NL+ A++F ++    G
Sbjct: 2    TWIPLHCHSQYSVLD---AMSSIKDFVAKGQEFGIPALALTDHGNLYGAVDFYKECTQKG 58

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPIIGC+  I          + ++       ++LL    +GY+ L  L S +   +   
Sbjct: 59   IQPIIGCECYIAPGSRFDKKKEKRSR--AAHHLILLCKNEQGYRNLCILTS-LAFTEGFY 115

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               RI    L++  +EGLI L+G  S  +  A    S +     L  F+ LF D  +  +
Sbjct: 116  YFPRIDKDLLRQY-SEGLICLSGCLSSSVSDAAL-KSPEALLLELQWFQDLFKDDYFTEV 173

Query: 187  QRHRGYDR----YRESQVVQLAYTH------------------ELPLVATNNSLFLSEED 224
            Q H+  +     ++E  + Q  Y+                    +P VATN+  +++  D
Sbjct: 174  QLHKMSEESIAGFKEEWLKQEYYSLIEKQIKVNTAVLEASKRLGIPTVATNDIHYINAND 233

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTP----------DHYLKNRSEMVSIFSDLPEALENT 274
            ++AH++L+ V     V    +    P          ++Y K+ ++M  +F D+PE + NT
Sbjct: 234  WQAHEILLNVQSGETVRIAKQNTHIPNPKRKVYRSREYYFKSPAQMAELFKDIPEVISNT 293

Query: 275  VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
            +E+A+RC F         P ++ +    +    E + R +A A    +LA+ A+ K Y +
Sbjct: 294  LEVAKRCDFTFDFSKKHYPIYVPESLKTLNSYTEED-RYQASAVFLKQLAEEALPKKYSS 352

Query: 335  QDY----------------RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            +                  ++R+D E+ +I       Y LIV D I WAK N IPVGPGR
Sbjct: 353  EVLAHIAKKFPHRDPIDIVKERMDMEMAIIIPKGMCDYLLIVWDIIHWAKANGIPVGPGR 412

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GSGAGSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++
Sbjct: 413  GSGAGSVLLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERH 472

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G + VAQIITFG+++AK A++DVGR L M  S+V+ + K IP+   +    +A+  D   
Sbjct: 473  GKDNVAQIITFGTMKAKMAVKDVGRTLDMALSKVNHIAKHIPD--LNTTLSKALETDPDL 530

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
             +  + D    ++++++  LEG  R+   HAAG++I    L+  +P+     S +  TQ+
Sbjct: 531  HQLYINDAESAQVIDMALCLEGSIRNTGVHAAGVIICGDQLTNHIPICISKDSTMITTQY 590

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGT 617
            +MK +E  G++K D LGLKTLT +  ++  + ++ G  + ++ +P DD  T+ LL    T
Sbjct: 591  SMKPVESVGMLKVDLLGLKTLTSINIAMSAIEKKTGQSLAMATLPLDDATTFSLLHQGKT 650

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +GIFQ+ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL
Sbjct: 651  MGIFQMESKGMQELAKNLRPDLFEEIIAMGALYRPGPMDMIPSFINRKHGKEIIEYDHPL 710

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++ +LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  ++M++++E+F   A 
Sbjct: 711  MESILKETYGIMVYQEQVMQIAGALASYSLGEGDVLRRAMGKKDFQQMEQEREKFCKRAC 770

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             NGI   +A  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D
Sbjct: 771  NNGIDPELATVIFDKMEKFAAYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDSD 830

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA- 856
            ++EKI K  ++A+   I I+PP +N     F   D  I +++ AIKG+G      I+E  
Sbjct: 831  DIEKIGKLIREAQSMGIPILPPHINVSSNHFVATDEGIRFAMGAIKGIGRGLIESIVEER 890

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
                P++S+ DF  R D KK++++ +ESL+ AG  DCF  +R  LL S++ + +     +
Sbjct: 891  DHHGPYESIRDFIQRSDLKKVSKKSIESLIDAGCFDCFDSNRDLLLASVEPLYEAIAKDK 950

Query: 917  KNRTNKHENIFAHEKGTFSDK----ITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            K   +     F    G    K    I L K     +     + E+ +LG Y + HP+D  
Sbjct: 951  KEAASGVMTFFT--LGAMDRKNEVPICLPKDIPTRSKKELLKKEKELLGIYLTEHPMDTV 1008

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG-SRIGWVTFSEPAKEYEAN 1030
            +  L ++ +    E      G+ +R   ++     K + K   +   +  S+    YE  
Sbjct: 1009 RDHLSRLSVVLAGEFENLPHGSVVRTVFIIDKVTTKISSKAQKKFAVLRVSDGIDSYELP 1068

Query: 1031 FFP 1033
             +P
Sbjct: 1069 IWP 1071


>gi|288916170|ref|ZP_06410550.1| DNA polymerase III, alpha subunit [Frankia sp. EUN1f]
 gi|288352361|gb|EFC86558.1| DNA polymerase III, alpha subunit [Frankia sp. EUN1f]
          Length = 1178

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 375/1072 (34%), Positives = 585/1072 (54%), Gaps = 66/1072 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA  L ++  +++    PA+AITD   ++ A +F ++A AAG++P
Sbjct: 4    SFVHLHVHTEYSMLDGAARLKDMFSEVSRQGMPAVAITDHGYMYGAYDFYRQATAAGVKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPS-----------IVLLVSTAEGYQRLIELVSR 118
            IIGC+  +  +  L +  + +   P   S           + +      G   L  L SR
Sbjct: 64   IIGCEAYVAPESRL-LKQRVRWGDPNQKSDDVSGGGSYTHMTMWARNETGLHNLFRLNSR 122

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              +     +  R+    + E   EGL+  TG  SG +           A K    ++++F
Sbjct: 123  ASIEGHYIKWPRMDSEIIAE-HAEGLMATTGCPSGEVQTRLRLGHYDEALKAAAKYQEIF 181

Query: 179  G-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            G +  +  +  H    +R     ++ +A   ++  V TN+S +  E +   H  L+ V  
Sbjct: 182  GRENFFCEIMDHGIEIERRVRDGLIDIARALDMRFVVTNDSHYTYESERATHSALLCVQT 241

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFI-LQVHAPILP 293
            ++ ++          +YLK+  +M +I +     +  E T+ IA R     +     ++P
Sbjct: 242  ASTIANPTFQFEGSGYYLKSAEQMYAIDTSDAWQQGCETTLMIAERVEPAGMFTKRNLMP 301

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            RF   + +     EE+  R +  AG++ R   G        +++R R+++EL VI  M F
Sbjct: 302  RFPVPDGE----TEESWFRKETWAGMDRRFPDG------FDEEHRTRVEYELGVILSMGF 351

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL+VADFI WAK   IPVGPGRGS AGS+ A+AL ITD+DP+  SLLFERFLNPDR+
Sbjct: 352  PSYFLVVADFIMWAKNQGIPVGPGRGSAAGSMVAFALGITDLDPIPHSLLFERFLNPDRV 411

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD DIDF + RR +VIRYV +K+G +R+AQI+T+G+++AKAA++D  R L  PY+  D
Sbjct: 412  SMPDIDIDFDERRRGDVIRYVTDKWGEDRIAQIVTYGTIKAKAAIKDSSRVLGYPYAVGD 471

Query: 474  RLCKLIPNDPA---HPVSLQAIAD--DSRFREAR------LADPSVDRLLEISQKLEGLY 522
            R+ K +P  PA     + L  I D   +R+ EA        +D  V ++++ ++ LEGL 
Sbjct: 472  RITKAMP--PAVMGKDIPLSGIFDPKHARYSEAGEIRSLYESDADVRKVIDTAKGLEGLI 529

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R A  HAAG+++   P+   +P++R       +TQF+    E  GL+K DFLGL+ LT++
Sbjct: 530  RQAGVHAAGVIMSAEPIIDHIPVWRRDADGAIITQFDYPTCETLGLLKMDFLGLRNLTVM 589

Query: 583  QKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++ +  + RG+KVDL  +  +D  +Y LL    TLG+FQL+   MR  L  M+PD  E
Sbjct: 590  DDAVRNVESNRGLKVDLMGLELNDPPSYELLARGDTLGVFQLDGGPMRSLLRMMRPDNFE 649

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQV 695
            DI A+++LYRPGP+  ++ + Y  RKNG+++I  IHP L +P+   L  T G+I+YQEQV
Sbjct: 650  DISAVLALYRPGPMGANSHINYALRKNGQQEITPIHPQLAEPLADILDTTYGLIVYQEQV 709

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M IAQ ++GY+L +AD+LRRAMGKK KE +DK+   F  G   NG S      ++++L  
Sbjct: 710  MAIAQRVAGYTLGQADLLRRAMGKKKKEILDKEFVPFSDGMKANGFSAEAIKMLWDILVP 769

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            F+DY FNK+H A Y ++SY TA++K ++P E++AA +T   D+ +K   +  + R+  I+
Sbjct: 770  FSDYAFNKAHTAGYGLVSYWTAYLKANFPAEYMAALLTSVRDDKDKSAIYLNECRRMGIR 829

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVD 873
            ++PP VNT   D+   GDN I   LAAI+ VG      I+    A   F S  DF  +VD
Sbjct: 830  VLPPDVNTSDADYTAHGDNEIRVGLAAIRNVGVNVVESIVRNRKAKTRFASFPDFLDKVD 889

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KG 932
            +   N+R +ESL+ AGA D  G++R  L +  +        V+K       ++FA + +G
Sbjct: 890  AVVCNKRTVESLIKAGAFDSLGHTRRGLAEKHEQAVDAVMGVKKKNAEGQFDLFAFDGEG 949

Query: 933  TFSDK---ITLEKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               D      +++FS +  + S+    E+ +LG Y S HPL   + IL        + S+
Sbjct: 950  GEEDAAPIFGVQEFSDQEWDKSLLLSLEREMLGLYVSDHPLLGVEHILAAKA----DCSI 1005

Query: 988  ATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            A + G        + +  ++   Q+K T++G      T  +     E  FFP
Sbjct: 1006 AALNGGEYPDGSVVTIGGIISGLQRKVTKQGKLWALATVEDMGGGLEVMFFP 1057


>gi|302388689|ref|YP_003824510.1| DNA polymerase III, alpha subunit [Thermosediminibacter oceani DSM
            16646]
 gi|302199317|gb|ADL06887.1| DNA polymerase III, alpha subunit [Thermosediminibacter oceani DSM
            16646]
          Length = 1061

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 369/1050 (35%), Positives = 579/1050 (55%), Gaps = 70/1050 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VHS YSLL+G   L  ++ K A    PA+A+TD   L+  + F +    AGI+P
Sbjct: 2    AFCHLHVHSEYSLLDGLCRLPLLVKKAAELAMPALALTDHGGLYGMVPFYRLCLEAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ + ++D       GK  F     +VLL    EG++ L+ LV+R ++ D      
Sbjct: 62   ILGCEVYV-VED--VTCRWGKESFH---HLVLLSENQEGFKNLLSLVTRSHV-DGFYYRP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L     +GLI L+G   G +         + AE+    +  +FG D  ++ LQ 
Sbjct: 115  RVDKKLLAS-HAKGLIALSGCIRGQVADLILRGDVKAAEEAAKEYADIFGRDNFFLELQY 173

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    ++     +  +A    + LVATN+  +L   D   H VL+AV   + + +     
Sbjct: 174  HGLAAEKKANFWMRSIAERLGIGLVATNDVHYLQPSDAGTHRVLLAVQTLSALGEAAS-- 231

Query: 248  VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              P   HYLK+ +EM ++F ++P ALENTV IA RC   L +    LP     E      
Sbjct: 232  -LPGNQHYLKSPAEMEALFREIPGALENTVAIAERCDVRLPLGGTKLPEIALPE----GV 286

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              ++ LR     G   R  +         Q+ + RL++EL+VI +  ++GYFLIV D + 
Sbjct: 287  SADDYLRKLCFQGAAARYGRPL------PQEVKDRLNYELSVIKKTGYAGYFLIVKDIVD 340

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+K  I VG GRGS AGS+ AY L ITD+DPL++ L+FERFLNP+R+S PD DID C  
Sbjct: 341  FARKRGIIVGAGRGSAAGSLAAYVLGITDVDPLKYGLIFERFLNPERISPPDIDIDLCHL 400

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             R EV+ Y+++++G ER+A +  F +LQA+AALRD GRAL + Y ++D  C  IP   +H
Sbjct: 401  GRREVLEYIRHRFGRERIAHVGAFSTLQARAALRDTGRALGLAYEKIDAACSRIPY--SH 458

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                 A+ +          D  V R   I++KL+GL RH + H+AG+ I DRPL++ VP+
Sbjct: 459  INLEDALKESPHLSSLVKNDAGVRRAFAIARKLQGLPRHMTQHSAGVAIADRPLTEYVPL 518

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             R    ++ +TQ +M  +E+ GL+K D LGL+ LT++ ++L  +  R G+ +    IP D
Sbjct: 519  QRASGEEI-ITQADMYALEELGLVKIDLLGLRFLTVIGETLKLVRDRYGIDMKPEEIPLD 577

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
            D +TY +L    T G FQLES GMR+ L  ++P  IED+ A+++LYRPGP+ + +   + 
Sbjct: 578  DEKTYMVLARGDTGGCFQLESGGMRKMLRRIKPKNIEDLSAVLALYRPGPLKSGMAEEFI 637

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R+ G + +  IHP ++P+L++T GV +YQEQ+MQ A L+SGY+  EAD+LRRA+ KK K
Sbjct: 638  ARRQGIKPVSYIHPALEPVLRDTYGVFVYQEQLMQAACLISGYTPGEADLLRRAIAKKKK 697

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            +E++++K RF+  A + GI +  A  +F  L  F DYGFNKSH+ +YAV++Y+T +++ H
Sbjct: 698  DEIEREKPRFLKRAVERGIDEKTAGELFATLEAFGDYGFNKSHSISYAVMAYRTVYLREH 757

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF--KVGDNR--IYYS 838
            +P+E+ A+   L MD   +++ +  +AR+  I+++ P +N     F  + G ++  I   
Sbjct: 758  FPLEYFASLFNLYMDTPSRLQLYLCEARRREIRLLLPDINMSGAGFVPEGGPHQRAIRAG 817

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            LA IK +G      I++A  D PF    DFC RVD + +N R LESLVF+GA D FG  R
Sbjct: 818  LALIKNLGPRGMEEILQAREDCPFTGFFDFCRRVDRRVINARALESLVFSGAFDSFGIPR 877

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              L+ SL       +W+    + + +N         ++   +E  + + S   F   Q++
Sbjct: 878  PALIISL-------KWMLSGCSGRPQNQLC----LLNENPDVEALAADLSVADFTPSQKM 926

Query: 959  ------LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN---------IRLAAMVVS 1003
                  +G+Y + HP++          IKG  E   T   ++         +R++ +++ 
Sbjct: 927  AQEMMSMGYYITAHPMEF---------IKGRPEETCTHTASDVEEIGEKQRVRISGILLD 977

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +  +TR G R+ +    +     E   FP
Sbjct: 978  LRSGRTRSGERMLFARLEDLTGSVELVIFP 1007


>gi|313204257|ref|YP_004042914.1| DNA polymerase iii, alpha subunit [Paludibacter propionicigenes WB4]
 gi|312443573|gb|ADQ79929.1| DNA polymerase III, alpha subunit [Paludibacter propionicigenes WB4]
          Length = 1265

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 392/1131 (34%), Positives = 621/1131 (54%), Gaps = 119/1131 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------- 58
            SFVHL VHS YS+L+G  +++ ++DK +     A+A+TD  N+F   EF           
Sbjct: 3    SFVHLHVHSHYSVLDGMSTISGLVDKASKSGMHAVALTDHGNMFGVKEFFNYAKKKNGKV 62

Query: 59   -------SQKACAAGI--------------------QPIIGCQLDIDMQDNL-KMTNQGK 90
                    ++  A G+                    +PIIGC+  +  +  L K   + +
Sbjct: 63   KGQIADLQKQLKAEGLTEEEKTSILEQIEEAKHKIFKPIIGCEAYVARRGRLSKEGTEDR 122

Query: 91   TPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGG 150
            + +     +VLL    +GYQ L +LVS M  ++      RI    L++  +EGLI  +  
Sbjct: 123  SGY----HLVLLAKNKKGYQNLCKLVS-MSWIEGMYYRPRIDHDILEKY-SEGLIASSAC 176

Query: 151  SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG---------YDRY--RESQ 199
              G I +     +   AEK ++ +KK+FGD  Y+ LQRH+          +D+   +  +
Sbjct: 177  LGGEIHKKVESGNMDEAEKSVMWYKKVFGDDFYIELQRHKTDKPNADYSTFDKQMRQNEE 236

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +++LA      +VATN+  F+ EE  EAH+ L+ ++    +   +R R T   +LK+  +
Sbjct: 237  LIKLARKTNTKIVATNDVHFVEEEHGEAHERLICLSTGKDLDDPNRMRYTKQEWLKSPEQ 296

Query: 260  MVSIFSDLPEALENTVEIARRCSFI---LQVHAPILP---------RFIEKECDDIQKEE 307
            M  IF+D+PEAL NT+EIA +  F         P+ P         ++  K  +++ + E
Sbjct: 297  MWQIFADIPEALNNTLEIAEKVEFFDIDSNAMMPVFPIPESFGTEEQYRAKFSEEMLRSE 356

Query: 308  -----------ENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKF 353
                       E  +R K  A    +LA    A  Y ++   D ++R+DFEL V+  M F
Sbjct: 357  FGEGFDRLGGYEKAVRVKLEADYLTKLAYEGAAVRYGSELTADQKERIDFELEVMKTMGF 416

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFLIV DFI+ A+   + VGPGRGS AGSV AY L ITDIDPL++ LLFERFLNPDR+
Sbjct: 417  PGYFLIVQDFIRAARDMKVSVGPGRGSAAGSVVAYCLRITDIDPLKYDLLFERFLNPDRI 476

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD DIDF  D R +V+R+V  KYG ERVA IIT+G++  K++++DV R  ++P S+ D
Sbjct: 477  SMPDIDIDFDDDGRGQVLRWVTEKYGKERVAHIITYGTMATKSSIKDVARVQRLPLSEAD 536

Query: 474  RLCKLIPND---------PAHPVS--LQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            RL KLIP+          P   +S  L+ + +    R +  +D ++   L  ++ LEG  
Sbjct: 537  RLTKLIPDKFPEGADGKAPKITISNCLKYVPEMQTARNS--SDLNLANTLRYAEMLEGTV 594

Query: 523  RHASTHAAGIVIGDRPLSQLVP----MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            R    HA G++IG   L+ LVP    M ++   ++ VTQ+    IE+ GLIK DFLGLKT
Sbjct: 595  RQTGVHACGVIIGADDLTNLVPLSTAMDKETNEEMLVTQYEGSVIEEIGLIKMDFLGLKT 654

Query: 579  LTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            L++++++L  + + +G+ +D+  IP DD +TY L +   T+G FQ ES+GM++ L  +QP
Sbjct: 655  LSIIKEALSNIKKSKGIDLDIDSIPIDDCKTYELFSKGLTVGTFQFESAGMQKHLINLQP 714

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
               ED+IA+ +LYRPGP+  I  + NRK+G+EKI    P+++  LK+T G+ +YQEQVM 
Sbjct: 715  TQFEDLIAMNALYRPGPMQYIPQFVNRKHGREKIEYPFPIMENRLKDTYGITVYQEQVML 774

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS-KTIAVNIFELLAKF 756
            +++ L+G++  ++D LR+AMGKK+ ++M+  K +F+ G  KNG   K     I+   A+F
Sbjct: 775  LSRDLAGFTRGQSDELRKAMGKKLIDKMEALKVKFMDGCEKNGFGPKAKLEQIWSDWAEF 834

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A Y FNKSHA  Y+ I+YQTA++K HYP EF+AA++T   D++ ++ KF  + +   + +
Sbjct: 835  AKYAFNKSHATCYSWIAYQTAYLKAHYPAEFMAANLTRNKDDITEVGKFMDECKNLGMNV 894

Query: 817  MPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDS 874
            + P VN   + F V  D  + + L AIKGVG      I+ E +A+  + S+ +   RV+ 
Sbjct: 895  LGPDVNESDLTFTVNADGNVRFGLGAIKGVGEGAVEAIVNERNANGKYTSMFNLIERVNL 954

Query: 875  KKLNRRVLESLVFAGALDCFG-YSRMQLL-------QSLDNIQKYAQWVEKNRTNKHENI 926
               N+R +ESL  +GA D F    R QL        Q L++I +Y    + +      ++
Sbjct: 955  TACNKRAMESLALSGAFDSFSDVHREQLFVENSKGEQVLESILRYGNKYQTDLAMTKNSL 1014

Query: 927  FAHEKGTFSDKITLEK--FSVENSSVRFENEQR-VLGFYFSGHPLDVYKPILRKM--GIK 981
            F    G  S +IT  +  ++ E S +   N++R ++G Y S HPLD Y+  +  +     
Sbjct: 1015 FG---GLDSVEITKPEIPYAPEWSPLEKLNKERDLIGMYLSAHPLDEYEFEINHICNATT 1071

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               + +++++G  +++  MV + +   ++ G+  G  T  + A  +E   F
Sbjct: 1072 VDLKDLSSLQGKGLKIGGMVTNFRHGTSKAGNPYGIFTLEDYAGAFEFALF 1122


>gi|329942392|ref|ZP_08291202.1| DNA polymerase III, alpha subunit [Chlamydophila psittaci Cal10]
 gi|325506690|gb|ADZ18328.1| DNA polymerase III subunit alpha [Chlamydophila psittaci 6BC]
 gi|328815302|gb|EGF85290.1| DNA polymerase III, alpha subunit [Chlamydophila psittaci Cal10]
 gi|328914265|gb|AEB55098.1| DNA polymerase III, alpha subunit, form 1 [Chlamydophila psittaci
            6BC]
          Length = 1242

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 375/1078 (34%), Positives = 592/1078 (54%), Gaps = 62/1078 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+ + + K    Q P++A+TD  NL+ A+EF ++     I+P
Sbjct: 2    TWIPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECQQNDIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +          + K+       ++LL     GY+ L  L+S +   +      
Sbjct: 62   IIGCEIYVAPSSRFDKKKEKKSRVAN--HLILLCKNELGYRNLC-LLSSLAFTEGFYYFP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +   EGLI L+   SG + +A    S +  EK L  ++ LFG+  Y  +Q H
Sbjct: 119  RIDRDLLSQ-HAEGLICLSACLSGSVAQAAL-ESEEALEKDLRWYQNLFGEDFYSEIQLH 176

Query: 190  R----------------GYDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +                 Y ++ +SQ      V+  +    +  VATN+  ++  +D+ A
Sbjct: 177  KMSEEKIASLGEEWLKHEYYQFIDSQTKVNQAVLDASKRLGIRSVATNDIHYIHADDWLA 236

Query: 228  HDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+ V           ++ + + K +   + ++Y K+  EM  +F+D PE + NT+E+
Sbjct: 237  HEILLNVQLGETIRIAKQNTYIPNPKRKTFRSREYYFKSPEEMAMLFADHPETITNTLEV 296

Query: 278  ARRCSFILQV---HAPI-LPRFIEKECDDIQKEEENE----LRNKAVAGLEVRLAQ---G 326
            A +C+  L +   H PI +P F++ + +  ++E        LR     GL  +       
Sbjct: 297  ADKCNLELNLSSKHYPIYVPDFLKDKPNYTEEERYAASSAFLRELCEKGLSTKYTPEKLA 356

Query: 327  AIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
             I+K +  +D     ++RL+ E+++I       Y LIV D I WAK N IPVGPGRGSGA
Sbjct: 357  HISKKFPDRDPLELVKERLEMEMSIIIPKGMCDYLLIVWDIIYWAKDNGIPVGPGRGSGA 416

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + 
Sbjct: 417  GSVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDN 476

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            VAQIITFG+++AK A++DVGR L +  S+V+ + K IP    +    +A+  D    E  
Sbjct: 477  VAQIITFGTMKAKMAVKDVGRTLDVALSKVNHIAKHIPE--LNTTLAKALETDPHLNELY 534

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMK 561
              D    ++++++ +LEG  R+   HAAG++I GDR L+  +P+     S +  TQF+MK
Sbjct: 535  TNDAEAAQVIDMAMRLEGSIRNTGVHAAGVIICGDR-LTNHIPICISKDSTMITTQFSMK 593

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620
             +E  G++K DFLGLKTLT +  ++  + ++ G  ++++ +P DD  T+ LL    T+GI
Sbjct: 594  PVESVGMLKVDFLGLKTLTSIHIAIRAIEKKTGKLLEMASLPLDDKTTFALLHQGKTMGI 653

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ+ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++ 
Sbjct: 654  FQMESKGMQELAKNLRPDSFEEIIAIGALYRPGPMDMIPSFINRKHGKEIIEYDHPLMES 713

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  ++M K++ RF   A KNG
Sbjct: 714  ILKETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDIDQMLKERTRFCERACKNG 773

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            I   +A  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E
Sbjct: 774  IDADLATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPREWLAALLTSDSDDIE 833

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
            K+ K   +A   +I I+PP +N    DF   D  I +++ AI+G+G      I+E     
Sbjct: 834  KVGKLIHEAHSMDICILPPDINESGTDFVATDKGIRFAMGAIRGIGKGLVESIIEEREKH 893

Query: 861  -PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P+ S++DF  R D KK+ ++  E+L+ AG  D F   R     +L+++       +K  
Sbjct: 894  GPYQSIQDFIQRSDLKKVTKKHTENLIDAGCFDVFEPDRDVAQATLESLYDSISKEKKEA 953

Query: 920  TNKHENIFAHEKGTFSDKITLEKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                   F+         ITL   +     +     + E+ +LG Y + HP+D  K IL 
Sbjct: 954  ATGVMTFFSLNTMNQKHPITLTPAADVVRRSKKEILKKEKELLGIYLTEHPMDAVKDILP 1013

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033
            ++ +    E      G  IR   ++     + + KG R    +  S+    YE   +P
Sbjct: 1014 RLSVVSPGEFDNLPHGAVIRTIFIIDKVTTRISSKGQRKFALLRVSDGVDSYELPIWP 1071


>gi|320102869|ref|YP_004178460.1| DNA polymerase III subunit alpha [Isosphaera pallida ATCC 43644]
 gi|319750151|gb|ADV61911.1| DNA polymerase III, alpha subunit [Isosphaera pallida ATCC 43644]
          Length = 1243

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 384/1095 (35%), Positives = 592/1095 (54%), Gaps = 87/1095 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  HS YSLL+GA  + +++ +  +    A+A+TD  NL +A+EF +++ AA  QPI
Sbjct: 14   FVHLHCHSHYSLLDGASKIPDLIARAKSLGMNALAVTDHGNLHAAMEFLRESKAADFQPI 73

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +           G     T   + LL   AEG++ L+ L S+ +L  +G     
Sbjct: 74   IGLEAYVAPGHRASKIPGGCNGQETSFHLTLLARDAEGFRNLMRLSSKAFL--EGFYYKP 131

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 + E  ++GLI L+G +S         +  + AE+    + K+FG +  ++ +Q +
Sbjct: 132  RIDKEILERHSKGLICLSGCASSEFSDFLLHDRFEEAERLAAWYLKVFGPENFFIEIQNN 191

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 +  E + + LA    LPLVAT+++ +L+ ED  AHDVL+ +      +   R R 
Sbjct: 192  GVAIQKECEEKSIDLARRMGLPLVATSDAHYLTREDAPAHDVLLCINTGKTFNDPTRMRF 251

Query: 249  TPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFI-LQVHAPILPRFIEKECDDIQKE 306
              D + +++  EM        +AL+ + +IA R  +  L +     P F         + 
Sbjct: 252  ETDEFFIRSPEEMYRAMPGHEDALKRSADIAARIDYSGLDLGTRRFPVFKPP----TGQT 307

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E  LR     GL  R             +  +RL+ EL +I RM F+ YFLIV DF+++
Sbjct: 308  PEEYLRALCQRGLVERYGNNP------PPEATRRLEHELEIILRMGFASYFLIVWDFVRF 361

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  IP    RGS  G++ +Y L ++ +DPL + LLFERFL+P+R   PD DID CQ+R
Sbjct: 362  ARERGIP-NSARGSACGALVSYVLHLSHVDPLTYDLLFERFLDPNRSEAPDIDIDLCQER 420

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV+NKYG E VAQI TFG+L A+A LRDVGR L +P S+VD++ KL+P      
Sbjct: 421  RYEVIEYVRNKYGVENVAQIGTFGTLAARAVLRDVGRVLGIPLSKVDQVAKLVPQ--VLN 478

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            +SL QAI  +   R     DP V R+L+  ++LEGL R+  THAAG+VI DRPL +LVP+
Sbjct: 479  ISLDQAIKQEPELRRLGELDPEVGRMLDYGRRLEGLVRNVGTHAAGVVIADRPLIELVPL 538

Query: 546  Y----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600
                 +D   ++  TQ++M  +EKAGL+K DFLGL+ LT+L +++  +  R  ++D  + 
Sbjct: 539  QKLPNKDKEKEVVTTQWDMGDVEKAGLLKMDFLGLRNLTILDRAVRLIRARHPRLDFRIE 598

Query: 601  -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P DD +T+ LL    T G+FQLES+G+R  L  M+PD   DIIA  +LYRPGP++  +
Sbjct: 599  NLPLDDPDTFALLQKGETKGVFQLESAGIRDLLIKMKPDVFNDIIATNALYRPGPLNGGM 658

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            V  Y + K+G+++    HP++  +L+ET GV++YQEQVM+I   L G  LS A    +A+
Sbjct: 659  VDDYIDCKHGRKQPNYPHPVMREILEETHGVMVYQEQVMRILNRLGGIELSAAYQCIKAI 718

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             KK  E + K K +F++GA + G++K  A  IF+L+  F  YGFNKSH+ AYA+++YQTA
Sbjct: 719  SKKKTEVIAKNKAQFVAGAVERGLAKEKAEEIFDLIEYFGGYGFNKSHSTAYALVAYQTA 778

Query: 778  WMKTHYPVEFLAASMTLEMDNVE--KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NR 834
            ++K H+P E++AA ++ E+D  E  K+ +  +D R+  I+++PP +N+   +F V D  +
Sbjct: 779  YLKAHFPTEYMAALLSSEIDGAERDKLVEHIEDCRRMGIEVLPPDINSGEAEFAVVDQGK 838

Query: 835  IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I +SLAAIKGVG      I++   ++ PF  + DF  RV S+ +    +E L+ AGA D 
Sbjct: 839  IAFSLAAIKGVGIKAVEAIVKERNERGPFAHIGDFLERVPSQVVTSSTVEILIKAGAFDH 898

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-------------------------- 927
             G +R QLL +L  + + AQ  +++R     N+F                          
Sbjct: 899  LGGNRAQLLAALPRLVQAAQTAQEDRKRGQRNLFDAIADDPPKPFRGKTAKVDANGHPHA 958

Query: 928  ---AHEKGTFSDKITLEKFSVEN----------------------SSVRFENEQRVLGFY 962
               AH +G  S        +                          S++   E++VLGFY
Sbjct: 959  NGSAHVQGNGSRHANGSAVAAATDSHGRSEEIAALLNLPNLPELADSLKLAEEKKVLGFY 1018

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK---KTRKG-SRIGWV 1018
             S HPL  +  ++R +     ++         I L  M+ S Q K   K+R G +R+  +
Sbjct: 1019 MSSHPLTRHAAMIRALASHSIDQLADVPEKTEIILGGMIASMQIKTVQKSRSGLTRMAKL 1078

Query: 1019 TFSEPAKEYEANFFP 1033
            TF +      A  +P
Sbjct: 1079 TFEDLTGSMPAMLWP 1093


>gi|269302450|gb|ACZ32550.1| DNA polymerase III, alpha subunit [Chlamydophila pneumoniae LPCoLN]
          Length = 1240

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 369/1083 (34%), Positives = 590/1083 (54%), Gaps = 72/1083 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQ---PAIAITDTNNLFSALEFSQKACAAG 66
            +++ L  HS YS+L+   ++++I D +A  Q+   PA+A+TD  NL+ A++F ++    G
Sbjct: 2    TWIPLHCHSQYSVLD---AMSSIKDFVAKGQEFGIPALALTDHGNLYGAVDFYKECTQKG 58

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPIIGC+  I          + ++       ++LL    +GY+ L  L S +   +   
Sbjct: 59   IQPIIGCECYIAPGSRFDKKKEKRSR--AAHHLILLCKNEQGYRNLCILTS-LAFTEGFY 115

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               RI    L++  +EGLI L+G  S  +  A    S +     L  F+ LF D  +  +
Sbjct: 116  YFPRIDKDLLRQY-SEGLICLSGCLSSSVSDAAL-KSPEALLLELQWFQDLFKDDYFTEV 173

Query: 187  QRHRGYDR----YRESQVVQLAYTH------------------ELPLVATNNSLFLSEED 224
            Q H+  +     ++E  + Q  Y+                    +P VATN+  +++  D
Sbjct: 174  QLHKMSEESIAGFKEEWLKQEYYSLIEKQIKVNTAVLEASKRLGIPTVATNDIHYINAND 233

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTP----------DHYLKNRSEMVSIFSDLPEALENT 274
            ++AH++L+ V     V    +    P          ++Y K+ ++M  +F D+PE + NT
Sbjct: 234  WQAHEILLNVQSGETVRIAKQNTHIPNPKRKVYRSREYYFKSPAQMAELFKDIPEVISNT 293

Query: 275  VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
            +E+A+RC F         P ++ +    +    E + R +A A    +LA+ A+ K Y +
Sbjct: 294  LEVAKRCDFTFDFSKKHYPIYVPESLKTLNSYTEED-RYQASAVFLKQLAEEALPKKYSS 352

Query: 335  QDY----------------RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            +                  ++R+D E+ +I       Y LIV D I WAK N IPVGPGR
Sbjct: 353  EVLAHIAKKFPHRDPIDIVKERMDMEMAIIIPKGMCDYLLIVWDIIHWAKANGIPVGPGR 412

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GSGAGSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++
Sbjct: 413  GSGAGSVLLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERH 472

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G + VAQIITFG+++AK A++DVGR L M  S+V+ + K IP+   +    +A+  D   
Sbjct: 473  GKDNVAQIITFGTMKAKMAVKDVGRTLDMALSKVNHIAKHIPD--LNTTLSKALETDPDL 530

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
             +  + D    ++++++  LEG  R+   HAAG++I    L+  +P+     S +  TQ+
Sbjct: 531  HQLYINDAESAQVIDMALCLEGSIRNTGVHAAGVIICGDQLTNHIPICISKDSTMITTQY 590

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGT 617
            +MK +E  G++K D LGLKTLT +  ++  + ++ G  + ++ +P DD  T+ LL    T
Sbjct: 591  SMKPVESVGMLKVDLLGLKTLTSINIAMSAIEKKTGQSLAMATLPLDDATTFSLLHQGKT 650

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +GIFQ+ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL
Sbjct: 651  MGIFQMESKGMQELAKNLRPDLFEEIIAMGALYRPGPMDMIPSFINRKHGKEIIEYDHPL 710

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++ +LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  ++M++++E+F   A 
Sbjct: 711  MESILKETYGIMVYQEQVMQIAGALASYSLGEGDVLRRAMGKKDFQQMEQEREKFCKRAC 770

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             NGI   +A  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D
Sbjct: 771  NNGIDPELATVIFDKMEKFAAYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDSD 830

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA- 856
            ++EK+ K  ++A+   I I+PP +N     F   D  I +++ AIKG+G      I+E  
Sbjct: 831  DIEKVGKLIREAQSMGIPILPPHINVSSNHFVATDEGIRFAMGAIKGIGHGLIESIVEER 890

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
                P++S+ DF  R D KK++++ +ESL+ AG  DCF  +R  LL S++ + +     +
Sbjct: 891  DHHGPYESIRDFIQRSDLKKVSKKSIESLIDAGCFDCFDSNRDLLLASVEPLYEAIAKDK 950

Query: 917  KNRTNKHENIFAHEKGTFSDK----ITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            K   +     F    G    K    I L K     +     + E+ +LG Y + HP+D  
Sbjct: 951  KEAASGVMTFFT--LGAMDRKNEVPICLPKDIPTRSKKELLKKEKELLGIYLTEHPMDTV 1008

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG-SRIGWVTFSEPAKEYEAN 1030
            +  L ++ +    E      G+ +R   ++     K + K   +   +  S+    YE  
Sbjct: 1009 RDHLSRLSVVLSGEFENLPHGSVVRTVFIIDKVTTKISSKAQKKFAVLRVSDGIDSYELP 1068

Query: 1031 FFP 1033
             +P
Sbjct: 1069 IWP 1071


>gi|289548089|ref|YP_003473077.1| DNA polymerase III subunit alpha [Thermocrinis albus DSM 14484]
 gi|289181706|gb|ADC88950.1| DNA polymerase III, alpha subunit [Thermocrinis albus DSM 14484]
          Length = 1150

 Score =  609 bits (1570), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 387/1011 (38%), Positives = 554/1011 (54%), Gaps = 89/1011 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL +H+ YSLL+GA+ + ++ ++  A    A+AITD  NLF  LEF +     GI+P+
Sbjct: 4   FVHLHLHTQYSLLDGAIKIKDLAERAQAYGYRAVAITDHGNLFGLLEFYKTLKEKGIKPL 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPT---VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           +G +             +G     T      I+L+    EG + L  L S  Y  +    
Sbjct: 64  LGMEAYFTTGSRFDRKGKGSDDNLTDRINHHIILIAKDQEGLKNLFRLSSLSYR-EGFYY 122

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             RI    LQ+    GLI +T    G           + AE+ +   K LFGD LY+ LQ
Sbjct: 123 KPRIDYELLQKY-HRGLIAVTACLKGVPTYYASMGEERKAEEWVKKLKDLFGDDLYLELQ 181

Query: 188 RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--QKD 244
            +   ++   ++V + +A    + LVAT ++ +L  ED  AH VLMA+     +   QK+
Sbjct: 182 ANGLPEQETANRVLINIAKRFGVKLVATADAHYLDPEDKTAHSVLMALQMKKTLQDIQKE 241

Query: 245 RPRVTP-DHYLKNRSEMV----SIFSDLPEALENTVEIARRC--SFI-LQVHAPILPRFI 296
             + +  D +     EM       F    +AL+NT+E+A +C  SF  L+    +LP+  
Sbjct: 242 GLKYSVCDLHFAPPQEMWERFRGKFDGWEDALKNTLEVAEKCADSFPQLENKDYLLPKAY 301

Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
           E        EE   L + A  GL  R A G       +++Y  RL++E+  + RM F+GY
Sbjct: 302 EG------VEEGQLLEDLAREGLRRRQALGHCPD---SKEYWDRLEYEIEQVRRMGFAGY 352

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
           FLIV DFI WAK   +PVGPGRGS AGS+ AYAL ITD+DP++  LLFERFLNP+R+SMP
Sbjct: 353 FLIVQDFINWAKNQGVPVGPGRGSAAGSLLAYALGITDVDPVKHGLLFERFLNPERISMP 412

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           D D+DFC + R++VI+YV+ KYG ++VAQIIT+  ++AK ALRD  RAL +PYS  DRL 
Sbjct: 413 DVDVDFCMEGREKVIQYVREKYGEDKVAQIITYNVMKAKQALRDAARALGLPYSVGDRLA 472

Query: 477 KLIPNDPAHP--VSLQAIA--------------------DDSRFREARLADPSVDRLLEI 514
           KL+P        +SL+ +                     +   FR+    D  + R++EI
Sbjct: 473 KLVPPGDVQGSWLSLEEMVHTPLEELLEKYGHHRTDIEENVKTFRQLMETDAEIRRVVEI 532

Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
           + KLEGL RH S HAAGIVI   PL ++VP Y D       TQ +M  +EK GL+K DFL
Sbjct: 533 ALKLEGLVRHTSLHAAGIVISPLPLEEVVPTYYD--DGQVATQLDMGQLEKLGLVKMDFL 590

Query: 575 GLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
           GLKTLT L    + + +R    VD   IP DD  T+ LL    T G+FQLES GM++ L 
Sbjct: 591 GLKTLTELNAMRNLIRERHKADVDFLKIPLDDERTFELLRKGNTSGVFQLESKGMQRLLS 650

Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            + PD  ED++A ++LYRPGP+ + +V  Y  RK+GKE++    P ++P+LKET GV +Y
Sbjct: 651 KLSPDRFEDLVAAIALYRPGPLKSGLVDSYVKRKHGKEEVEYPFPELEPVLKETYGVWVY 710

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QEQ+M+ +Q+L+G++  EAD LR+A+GKK KE M   +E+FI GA + G  +     ++E
Sbjct: 711 QEQIMKASQILAGFTPGEADTLRKAIGKKDKELMASLREKFIRGAVERGYKEEKITKLWE 770

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
              KFA Y FNKSH+ AY  +SY TA++K HY  EF A  ++ E ++  K      DA++
Sbjct: 771 DFEKFASYSFNKSHSVAYGYLSYWTAYLKAHYTEEFFAVKLSYEKNDA-KFLALVNDAKK 829

Query: 812 FNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
             I I+PP +N   V F + GD  + + LA IKG+G  TA  I++A       +      
Sbjct: 830 HRITILPPDINKSHVHFVIEGDRTLRFGLARIKGIGEDTAYQIVKARK----TTWTQPSQ 885

Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV---EKNR---TNKHE 924
              +  LN++ LE+L+ AGA D  G SR  LL++L++       V   EKN     ++ E
Sbjct: 886 VARAAGLNKKALEALIKAGAFDFTGKSRTALLKALESKNALLGGVSLFEKNSQSTEDRQE 945

Query: 925 NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
           +IF +EK                          VLGFY + HP+DV++  L
Sbjct: 946 DIFHYEK-------------------------EVLGFYLTRHPIDVWEGFL 971


>gi|110636521|ref|YP_676728.1| DNA polymerase III subunit alpha [Cytophaga hutchinsonii ATCC 33406]
 gi|110279202|gb|ABG57388.1| DNA polymerase III, alpha subunit [Cytophaga hutchinsonii ATCC 33406]
          Length = 1194

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 355/1059 (33%), Positives = 573/1059 (54%), Gaps = 69/1059 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VHS +SLL+GA S+  ++ K   ++  A+A+TD  N+    +F  +A    I+
Sbjct: 2    PDFAHLHVHSQFSLLDGAASIKGLVGKAVKNEMKALALTDHGNMHGIFQFVAEAVKNNIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+GC+  + ++D  K  N  K         +LL    EGY+ LI+L S  Y+  Q  + 
Sbjct: 62   PIVGCEFYL-VEDRFK-KNFTKDNKDVRYHQLLLAKNPEGYKNLIKLCSLGYIEGQYGKY 119

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    + +   +GLI  T      + R       +  EK    +  LFG+  YV LQR
Sbjct: 120  PRIDKELILQY-HKGLIATTCCLGAEVPRTILAKGEEAGEKAFKWWLDLFGEDYYVELQR 178

Query: 189  HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++   ++V ++LA  +++P++A+N+S ++ ++D  AHD+L+ +      S      
Sbjct: 179  HDIKEQNIVNEVLIKLARKYQVPIIASNDSHYVDQKDSNAHDILLCINTGEKQSTPTMKD 238

Query: 248  VTPDH---------------YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             + D                Y K + EM ++FSD+PEA++NT++I  +   +      +L
Sbjct: 239  FSDDESMMKGRRFAFANDQFYFKTKEEMSTLFSDIPEAIDNTMQIVDKVEILKLKQDILL 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P +   E      +++N L++    G   R             + ++RLDFEL+ I  M 
Sbjct: 299  PNY---EIPSTFLDQDNYLQHLTYEGARNRYVD-------VTPEIKERLDFELHTIRTMG 348

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F+GYFLIV DFI   ++  + +GPGRGS AGS  AY + IT+IDP++++LLFERFLNPDR
Sbjct: 349  FAGYFLIVQDFINKGREIGVLIGPGRGSAAGSAVAYCIGITNIDPIKYNLLFERFLNPDR 408

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
             SMPD D DF  + R +VI YV  KYG ++VAQI+T+G++ AK +++DV R L +P  + 
Sbjct: 409  KSMPDIDTDFDDEGRQKVIDYVVEKYGKKQVAQIVTYGTMAAKMSIKDVARVLDLPLQES 468

Query: 473  DRLCKLIPNDPA-------------------------HPVSLQAIADDSRFREARLADPS 507
            + L KL+P+ P                            ++ + I +  + RE  L D  
Sbjct: 469  NALAKLVPDKPGIELNWVMKGPMKASDKKNEKDKTLTEELTPEDIENVKKLREM-LDDEG 527

Query: 508  V--DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
                 +L+ +  LEG  R    HAAGI+I  + L  ++P++    S+L VTQF+ K IE 
Sbjct: 528  TLASDVLKEALILEGSVRGTGIHAAGIIIAPKDLYDIIPVFTAKDSELLVTQFDGKVIED 587

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            AG+IK DFLGLKTLT+++ +L  + +  G+K+D+  IP DD +T+ L     T   FQ E
Sbjct: 588  AGVIKMDFLGLKTLTIIRDALKMIEENHGIKIDIDYIPLDDAKTFELYQKGETNATFQFE 647

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S+GM++ L  ++PD  ED+IA+ +LYRPGPI+ I  +  RK GKE+IV   P ++  L +
Sbjct: 648  SAGMQKHLINLKPDKFEDLIAMNALYRPGPIEYIPKFIQRKLGKEEIVYDLPEMEEYLGD 707

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+ +YQEQVM ++Q L+G++  +ADVLR+AMGKK +  +DK K +FI GA   G+   
Sbjct: 708  TYGITVYQEQVMLLSQKLAGFTKGDADVLRKAMGKKDRATLDKMKGKFIEGAVAKGLDPK 767

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +   ++     FA Y FNKSH+  YA ++YQT ++K +YP E++A+ +T  + N +KI  
Sbjct: 768  VCEKVWTDWEAFAQYAFNKSHSTCYAFVAYQTGYLKANYPSEYMASVLTHNLSNFDKISF 827

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIM-EASADKPF 862
            F ++ ++  + ++ P VN     F V  N +I + + AIKGVG    + I+ E  A+ PF
Sbjct: 828  FMEECQRMGMAVLGPDVNESSYQFSVNSNGQIRFGMGAIKGVGEGPVQAIVDERKANGPF 887

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALD---------CFGYSRMQLLQSLDNIQKYAQ 913
                DF SRV+ + ++++  ESL  AGALD          F  +  + +  L+   +Y  
Sbjct: 888  KDFFDFVSRVNLRAVSKKTFESLALAGALDYFTELHRAQYFNVAERETITFLEKAIRYGN 947

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
              +    +   ++F            +       +  + + E+ ++GFY SGHPLD +K 
Sbjct: 948  AFQTEDDSNQSSLFGDSSSAKPAPPKITPCEEWGNIEKLKKEKEIVGFYISGHPLDQFKL 1007

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             +        E  +++ +G ++ +A +V     ++++ G
Sbjct: 1008 EIDNFCNCPLENVMSSPQGKDLTVAGIVTKVNVRQSKNG 1046


>gi|325067134|ref|ZP_08125807.1| DNA polymerase III subunit alpha [Actinomyces oris K20]
 gi|326771682|ref|ZP_08230967.1| DNA polymerase III, alpha subunit [Actinomyces viscosus C505]
 gi|326637815|gb|EGE38716.1| DNA polymerase III, alpha subunit [Actinomyces viscosus C505]
          Length = 1197

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 368/1077 (34%), Positives = 585/1077 (54%), Gaps = 70/1077 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YS+L+GA  + + + +     QPA+AITD   +F A EF   A AAGI+PI
Sbjct: 16   FVHLHVHTDYSMLDGAGKIKDYVAEAKRLGQPALAITDHGYMFGAYEFYAAATAAGIKPI 75

Query: 71   IGCQLDI----------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            IG +  +                + Q +  ++ +G     +   + LL    EG   L+ 
Sbjct: 76   IGVEAYMTPGTSRFDKTRVFWGDESQRSDDVSARG-----SYTHMTLLSRNNEGLHNLMR 130

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            + S   L  Q  ++ RI    L    + GLI  TG  S  +           A +     
Sbjct: 131  MDSFASLEGQWGKAPRIDRELLSRYAS-GLIGSTGCPSSEVQTRLRLGQWDEALRVAGEL 189

Query: 175  KKLFGDRL-YVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG    YV L  H      R ++ ++++A     PL+ATN+S ++  ED    D ++
Sbjct: 190  QDIFGKEFFYVELMDHGLEIEQRVTKDLLRIAKEIGAPLLATNDSHYVRPEDRTIQDAML 249

Query: 233  AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---H 288
             +   +V+S  DR +   D +YL+  +EM  +FS++P+A +NT+ +A +C    +     
Sbjct: 250  CINSGSVLSDPDRFKFDGDTYYLRPGAEMRRLFSEMPQACDNTLLVAEQCDVHFRTVDEG 309

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
            A  +P F   E +     +E+    +   G++ R        G   +D R++ ++E++VI
Sbjct: 310  ASYMPAFPVPEGE----TDESWFIKECWRGMDRRF------NGDIPEDCRKQAEYEISVI 359

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VAD+I WAK + I VGPGRGSGAGS+ AYA+ IT+++PLR  L+FERFL
Sbjct: 360  TQMGFPGYFLVVADYINWAKAHGIRVGPGRGSGAGSMVAYAMGITELNPLRHGLIFERFL 419

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DF + RRDEVI YV+ KYG +R++Q++T+G ++AK +L+D  R +  P
Sbjct: 420  NPERISMPDIDVDFDERRRDEVIEYVREKYGADRISQVVTYGVIKAKQSLKDSSRVMGYP 479

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAI---ADD-----SRFREARLADPSVDRLLEISQKLE 519
            Y+  DRL K +P       +S++ I   AD+       FR+    DP   +++E+++ LE
Sbjct: 480  YAVGDRLTKAMPPSVQGKDISIKGIFNPADERYGEAEEFRKLHAEDPDAQKIVELAKGLE 539

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R    HA  +++    L+ ++PM + ++    +TQF+    E  GL+K DFLGL+ L
Sbjct: 540  GMTRQWGVHACAVIMSSATLTDIIPMMQRLQDGAVITQFDYPTCEHLGLLKMDFLGLRNL 599

Query: 580  TLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +L+ +   G   +D+  +  DD  TY LL+   TLG+FQL+  GMR  L  M+PD
Sbjct: 600  TVISDALENIVANGKPALDIDHVELDDRATYELLSRGETLGVFQLDGGGMRTLLRLMKPD 659

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVIIYQ 692
              EDI A+ +LYRPGP+  ++   Y  RKNG ++++ IHP     +DP+L  T G+I+YQ
Sbjct: 660  NFEDISAVGALYRPGPMGAESHTNYALRKNGLQEVIPIHPELKEALDPILGTTHGLIVYQ 719

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM+IA  L+G+S+ +AD LR+AMGKK  + + K    F +G  ++G SK     ++++
Sbjct: 720  EQVMKIATDLAGFSMGKADALRKAMGKKKMDILAKMFVEFEAGMVQSGFSKESVKTLWDV 779

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA Y FNK+H+AAY V+SY TA++K HYP E++AA +T + DN +K+  +  + R  
Sbjct: 780  VVPFAKYAFNKAHSAAYGVVSYWTAYLKAHYPTEYMAALLTSQKDNKDKLAVYLGECRHM 839

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSR 871
             I ++PP VN     F      + + L+A++ VG      I+ A  DK  F S EDF  +
Sbjct: 840  GITVLPPDVNASRAQFSAVGEDVRFGLSAVRNVGINVVDAIVAAREDKGEFTSFEDFLDK 899

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V +   N+R ++SL+ AGA D  G++R  L    ++       V++N      ++FA   
Sbjct: 900  VPAVVCNKRTIDSLIKAGAFDSLGHTRRSLQACHEDFVDEVIGVKRNEAAGQFDLFASLM 959

Query: 932  GTF--SDKITLEKFSVENSSV----------RFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            G    +D        V +S V          +   E+ +LG Y S HPL   + +L K+ 
Sbjct: 960  GGSDDADDSPFGNGPVFSSDVPNLPEWDKKDKLAYERDMLGLYVSDHPLMGLEGLLGKLA 1019

Query: 980  ---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               I    E+     G  + +A ++ S  +K T++G+        + A   E  FFP
Sbjct: 1020 DKEISELHENDELPDGAMVTIAGLITSLTRKTTKQGNLWAIAQVEDLAGSIEVLFFP 1076


>gi|194333751|ref|YP_002015611.1| DNA polymerase III subunit alpha [Prosthecochloris aestuarii DSM 271]
 gi|194311569|gb|ACF45964.1| DNA polymerase III, alpha subunit [Prosthecochloris aestuarii DSM
            271]
          Length = 1190

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 363/1009 (35%), Positives = 554/1009 (54%), Gaps = 59/1009 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YS+    +    +          ++A+TD + +F+  E    A  AG++ I
Sbjct: 6    FVHLHTHTHYSMQSSPIFPKELFSACKKAGMESVAVTDYSAMFNMPELFSLASDAGVKLI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ +  QD     + G+      PS++LLV   EGY+ L  L+SR         +  
Sbjct: 66   IGSEVYLLEQD---AHHNGR--HSVSPSLILLVKNEEGYKNLCILLSRAAREGFVNATPH 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +  S L+E    GLI L+G  +G I RA    +   A      +  +FGD  Y+ LQRH 
Sbjct: 121  VDSSLLKEYHA-GLICLSGYYAGRIGRALLAGNRDEAASFTAFYHDIFGDDFYLELQRHF 179

Query: 191  G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
              +D    S  + LA  H + LVATNN  +L ++D   +  ++A+     +S  +   + 
Sbjct: 180  ATFDDQLNSDTIALAEQHGVQLVATNNVHYLQKKDAGRYRAMVAIRTKERLSSSNLQCLP 239

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +HY K+  EM S+FS+    L NT  IA +CS++     P LP F+  E      +E 
Sbjct: 240  NSEHYFKSSDEMASLFSNEHHELSNTAAIAAKCSYVFCQQEPRLPHFLLPEG---FSDEA 296

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR+    G   + A    ++G   Q    R++ EL VI  M FS YFLIV+D I  ++
Sbjct: 297  EYLRHLTYEGAREKYADPE-SQGLTWQQVEDRIEKELGVIISMGFSSYFLIVSDLIAASR 355

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +    VGPGRGS AGS+ AY   IT IDPL++ LLFERFLNP+R+SMPD DIDF    + 
Sbjct: 356  RLGYSVGPGRGSAAGSIIAYLTGITRIDPLKYKLLFERFLNPERLSMPDIDIDFTPVGKQ 415

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             V+ Y  +KYG + VA+++  G+L A+AA+RD GR L++P  +VDRL KL+P+ P   + 
Sbjct: 416  RVLDYTVDKYGDDSVAKVVAIGTLGARAAIRDAGRVLEVPLQEVDRLAKLVPSKPGTTLQ 475

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             Q + + +  RE   +      L++ +  LEG  R+ S HA  +VI D PL + VP+Y  
Sbjct: 476  -QGLDEVNELRELVESSSQNSTLMDYALALEGRARNVSMHAGAVVITDGPLEEQVPLYVS 534

Query: 549  VRSDLP---------------------------VTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             + +                             VTQF+  WIE AGL+K D+LGL+TL +
Sbjct: 535  NKIETEARKFADEYNEDELERGALKSNSDEKQVVTQFDKNWIETAGLLKIDYLGLETLAV 594

Query: 582  LQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            + ++L  + +R  +V +L  +P D+ + + +       GIFQ ES GM+  +  +QP  I
Sbjct: 595  IDETLHLIKKRHAEVIELETVPMDNKKAFRIFQEGKMAGIFQFESQGMQNYMMQLQPTQI 654

Query: 641  EDIIALVSLYRPGPIDNIV--------VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
             DIIA+ +LYRPG ++  V        ++ +RK+ +E I  +HP+++ +LKET GVI+YQ
Sbjct: 655  GDIIAMSALYRPGALNARVDPKRNAVDLFVDRKHNREPIDYMHPMLEEILKETYGVIVYQ 714

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQI+Q++ G+SL++AD LR+AMGKK  E M K K  F+ GA   G+   +A  IF+L
Sbjct: 715  EQVMQISQVMGGFSLAKADNLRKAMGKKKPEIMQKFKADFVEGAVNQGVHDKLANRIFDL 774

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +A+FA YGFNKSH+AAY V++Y TA++K HYP EF+ A +  E+ +  ++K    +AR F
Sbjct: 775  MAEFAGYGFNKSHSAAYGVLAYWTAYLKAHYPGEFMTAILNSEIGDTARMKHLTDEARSF 834

Query: 813  NIQIMPPSVNTPCVDFKVGD----NRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLE 866
            NI I+PP +NT    F + D      I   L+AIK VG   AR ++ +     K + +L 
Sbjct: 835  NISILPPDINTSDALFSIDDVDGLPAIRVGLSAIKQVG-NAARAVVTSRLRRKKEYVNLF 893

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            D  + VD + +NR+ LE L+ AGALD    +R +L+ ++D   K+ Q   ++ T      
Sbjct: 894  DLTASVDLRAMNRKALECLILAGALDSIDPNRAKLIANIDKAIKFGQLQNRSVTLGQCGF 953

Query: 927  FAHEK-GTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
            F+ +  G   D +   ++       S + + E++++GFY S HPLD ++
Sbjct: 954  FSDDNAGGMQDSLYPDMDPADPMPDSEKLQAEKKLVGFYLSRHPLDPFR 1002


>gi|313156974|gb|EFR56406.1| putative DNA polymerase III subunit alpha [Alistipes sp. HGB5]
          Length = 1218

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 367/1100 (33%), Positives = 579/1100 (52%), Gaps = 85/1100 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL VH+ YS+L+GA ++  ++ +  A    AIAITD  N++    F   A  AG++
Sbjct: 2    PDFVHLHVHTQYSILDGAAAIKPLIKRAKALGMNAIAITDHGNMYGVKNFHDTATDAGVK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+GC++ + +++  +     K        ++LL    EGY  L ++VS  Y   +G   
Sbjct: 62   PILGCEVYV-VKNRFEKDKDEKAG----DHLILLAKNLEGYHNLCKMVS--YSFTEGFYY 114

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                   L E   EGLI  +    G + +A   N  + AE+ +  FK +FG+  Y+ LQ 
Sbjct: 115  KPRIDKQLIEQYHEGLICCSACLGGEVPQAIMHNDIEEAERVVQWFKNIFGEDYYLELQL 174

Query: 189  HRGYDRYRESQV-----------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            H   D  +++ V           ++LA  + +  + +N+  F+  ED  AHD L+ +   
Sbjct: 175  HPSGDPQKDADVYENQLRVNKVILELAAKYGVKYICSNDVHFILAEDAVAHDHLICLNTG 234

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-- 295
              +   +R R T   YLK+  EM ++F D PEAL  T+EIA +C      HAP++P F  
Sbjct: 235  RDLDDPNRMRYTFQEYLKSPEEMAALFPDHPEALATTLEIADKCEDYKLTHAPLMPNFPP 294

Query: 296  ------------------IEKE--------CDDIQKEEE-----NELRNKAVAGLEVRLA 324
                              IE E        C  + + EE      EL ++ +   +    
Sbjct: 295  PEDFPIALGELRESFVKKIEDEEMLAKIGACATVPELEELVAGDKELSDRLMVAKQYCYL 354

Query: 325  QGAIAKGYHA-------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
            +    KG H        +   +R+ +EL+ I  M F GYFLIV D+I+ A++  + VGPG
Sbjct: 355  KDLTYKGAHMRYGDVLDEKTEERIKYELSTIEWMGFPGYFLIVWDYIRAAREMGVSVGPG 414

Query: 378  RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
            RGS AGSV AY L IT+IDPL++ LLFERFLNP+R+S+PD D+DF +D R +V+RY   K
Sbjct: 415  RGSAAGSVVAYCLKITNIDPLKYDLLFERFLNPERISLPDVDVDFDEDGRADVLRYCVQK 474

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DPAH-PVSLQAI 492
            YG +RVAQI+TFG++  K A++DV R  ++  S+ DRL KL+P+    D  H       +
Sbjct: 475  YGQKRVAQIVTFGTMAPKMAIKDVARVQKLALSESDRLSKLVPDKVTPDKKHGETPFDFV 534

Query: 493  ADDSRFREARLADPS--VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
              +S    A    P+  +   L+ ++KLEG  R    HA G++IG   L +  PM     
Sbjct: 535  YKESPELAAERESPNQLIRNTLKYAEKLEGSIRQTGVHACGVIIGQDDLEKFAPMAIAKD 594

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
            ++L V +F  K +E  GLIK DFLGL+TL++++ +++ + A  GV VD+  I  DD  TY
Sbjct: 595  AELNVVEFEGKEVESVGLIKMDFLGLRTLSIIKDAVENVKAVHGVDVDIDGISLDDAPTY 654

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             +     T G+FQ ES GM++ L  ++P+  ED+IA+ +LYRPGP++ I  +  RK+G+E
Sbjct: 655  EVFARGDTTGLFQFESPGMKKHLRNLKPNRFEDLIAMNALYRPGPMEYIPNFIARKHGQE 714

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +      ++  L +T G+ +YQEQVM ++Q L+G++  EAD LR+AMGKK ++ +DK K
Sbjct: 715  PVTYEIADMEEYLNDTYGITVYQEQVMLLSQKLAGFTGGEADTLRKAMGKKKRDVLDKMK 774

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI G  + G  + I   I+     FA Y FNKSH+  YA ++YQT ++K HYP EF+A
Sbjct: 775  PKFIEGCKQRGHDEKICDKIWGDWEAFASYAFNKSHSTCYAYVAYQTGYLKAHYPSEFMA 834

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF---KVGDNRIYYSLAAIKGVG 846
            A ++  + +++++  +  + ++  I+++ P +N     F   K GD R  + L A+KGVG
Sbjct: 835  ALLSRNLADIKQLTLYMNECKRMGIRVLGPDINESMRTFSSNKAGDVR--FGLGAVKGVG 892

Query: 847  TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS 904
                  I+ E +A+  F  + D   RV+   +NR+  E+L +AG  D   G+ R +   +
Sbjct: 893  EAAVESIIAERNANGRFKDIYDLMERVNFSAVNRKCFENLAYAGGFDSISGFHRGKFFGA 952

Query: 905  ----------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
                      ++ + +Y Q  +  + N  +++F         +  L   +  +       
Sbjct: 953  DARDNTGVTFIEQLMRYGQRFQAEKNNAQQSLFGGGGHVDIQRPVLPACADWSQLETLAK 1012

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            E+ ++G Y S HPLD YK I+  M        E++  ++G  I +A MVVS Q   T+ G
Sbjct: 1013 EREMIGHYLSAHPLDDYKIIINHMCKTQLTELENLEALKGQEIAVAGMVVSVQNLITKTG 1072

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
               G     +    +E   F
Sbjct: 1073 KPWGKFVLEDYNGTHEFALF 1092


>gi|89898738|ref|YP_515848.1| DNA polymerase III subunit alpha [Chlamydophila felis Fe/C-56]
 gi|89332110|dbj|BAE81703.1| DNA polymerase III alpha subunit [Chlamydophila felis Fe/C-56]
          Length = 1241

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 368/1080 (34%), Positives = 589/1080 (54%), Gaps = 67/1080 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+ + + K    Q P++A+TD  NL+ A+EF ++     I+P
Sbjct: 2    TWIPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECYQQDIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +          + K+       ++LL    +GY+ L  L+S +   +      
Sbjct: 62   IIGCEVYVAPSSRFDKKKEKKSRVAN--HLILLCKNEQGYRNLC-LLSSLAFTEGFYYFP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +  +EGL+ L+   SG + +A    S +  EK L  ++ LFG+  Y  +Q H
Sbjct: 119  RIDRELLSQY-SEGLVCLSACLSGSVAQAAL-ESEEALEKDLRWYQSLFGEDFYSEVQLH 176

Query: 190  R----------------GYDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +                 Y ++ E+Q      V++ +    +  VATN+  ++  ED+ A
Sbjct: 177  KMSEEKIASLGEEWLKHEYHQFIETQTKVNQAVLETSKRLGIRSVATNDIHYIHPEDWLA 236

Query: 228  HDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+ V           ++ + + K +   + ++Y K+  EM ++F+D PE + NT+E+
Sbjct: 237  HEILLNVQLGETIRIAKQNTYIPNPKRKAFRSREYYFKSPKEMANLFADHPETISNTLEV 296

Query: 278  ARRCSFILQV---HAPI-LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA------ 327
            A +C+  L     H PI +P F++++    Q   E E    + A L     +G       
Sbjct: 297  ADKCNLKLDFSVKHYPIYVPEFLKEK----QTYTEEERYTASSAFLRELCEKGLLKYTPD 352

Query: 328  ----IAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                I+K +  +D     ++R++ E+++I       Y LIV D I WAK + IPVGPGRG
Sbjct: 353  KLAHISKKFPNRDPLELVKERMEMEMSIIIPKGMCDYLLIVWDIIHWAKAHGIPVGPGRG 412

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            SGAGSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G
Sbjct: 413  SGAGSVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHG 472

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
               VAQIITFG+++AK A++DVGR L +  S+V+ + K IP   A     +A+  D    
Sbjct: 473  KNNVAQIITFGTMKAKMAVKDVGRTLDVSLSKVNLIAKHIPELNA--TLSKALETDPHLN 530

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
            +    D    ++++++ +LEG  R+   HAAG++I    L+  +P+     S +  TQF+
Sbjct: 531  QLYADDAEAAQVIDMAMQLEGSIRNTGVHAAGVIICGDHLTNHIPICISKDSTMITTQFS 590

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTL 618
            MK +E  G++K DFLGLKTLT +  ++  + ++ G  ++++ +P DD  T+ LL    T+
Sbjct: 591  MKPVESVGMLKVDFLGLKTLTSIHIAIQAIQKKTGKLLEMATLPLDDKTTFSLLHQGKTM 650

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            GIFQ+ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPLI
Sbjct: 651  GIFQMESKGMQELAKNLRPDSFEEIIAIGALYRPGPMDMIPSFINRKHGKEVITYDHPLI 710

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            + +LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK   +M +++ +F   A K
Sbjct: 711  ESILKETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDINQMLQERTKFCERACK 770

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NGI   +A  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D+
Sbjct: 771  NGIDADLATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDSDD 830

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-S 857
            +EK+ K   +A   NI ++PP +N    +F   D  I +++ AIKG+G      I+E   
Sbjct: 831  IEKVGKLIHEAHSMNICVLPPDINESGTNFVATDKGIRFAMGAIKGIGKGLVESIIEERE 890

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
               P+ +++DF  R D KK+ ++  E+L+ AG  D F   R      L++I +     +K
Sbjct: 891  KHGPYQNIQDFLKRSDLKKVTKKHTENLIDAGCFDVFEPDRDVAQAVLESIYESISKEKK 950

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
                     F+         I L   +           + E+ +LG Y + HP+D  K I
Sbjct: 951  EAATGVMTFFSLNTMLKEQPIVLTPTTHIVRRQKKEILKKEKELLGIYLTEHPMDAVKDI 1010

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033
            L ++ +    E  +   G  IR   ++     + + KG R    +  ++    YE   +P
Sbjct: 1011 LPRLSVVSPGEFESLPHGAVIRTIFIIDKVTTRISSKGQRKFALLRVNDGVDSYELPIWP 1070


>gi|326801307|ref|YP_004319126.1| DNA polymerase III subunit alpha [Sphingobacterium sp. 21]
 gi|326552071|gb|ADZ80456.1| DNA polymerase III, alpha subunit [Sphingobacterium sp. 21]
          Length = 1493

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 372/1122 (33%), Positives = 589/1122 (52%), Gaps = 113/1122 (10%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------SQ 60
            K   +VHL  H+ +S+L+  +S+ +++   A  + PA+AITD  N+  A  F        
Sbjct: 256  KEVDYVHLHNHTQFSILQSTISVADLVKAAAKHRMPAVAITDHANMMGAFHFVSNVLNHN 315

Query: 61   KACAAG---------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
            KA  A                I+PI+GC+  +   DN    +  KT       IV+L   
Sbjct: 316  KAAEAKNKTAVENGEEPSEVIIKPIVGCEFFV--CDN----HADKTRKDNGYQIVMLAKN 369

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
              GY  L ++ S  Y  D      RI    +++   E +I+L+G   G I          
Sbjct: 370  KAGYHNLAKMSSLAYT-DGFYYVPRIDRKIIEQY-KENIIVLSGNLYGEIPNKLLNMGEN 427

Query: 166  VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEED 224
             AE+ L+ +K+ FG+  Y+ L RH   D  R  + +V+LA  H + L+ATNN+ ++++ED
Sbjct: 428  QAEEALIWWKETFGEDFYIELMRHGQEDENRINASLVELARKHGVKLIATNNTYYINKED 487

Query: 225  YEAHDVLMAVAHS-TVVSQKDRPR------VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
              +HD+L+ V  +  + + K R R         ++Y K+  EM  +F+D+PEA+ N  EI
Sbjct: 488  AHSHDILLCVRDAEKLATPKGRGRGFRYGLPNEEYYFKSGEEMKKLFTDIPEAIANIQEI 547

Query: 278  ARRCSFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
              +          +LP+F         E + D  ++ E   LR+    G   R ++    
Sbjct: 548  VDKVEVYSLYRNVLLPKFDIPEEFQVTEDQLDGGKRGENKYLRHLTYVGAAKRYSE---- 603

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                  + R+RLDFEL  I +  + GYFLIV DFI  A++  + VGPGRGS AGS  AY 
Sbjct: 604  ---ITPEIRERLDFELQTIEKTGYPGYFLIVQDFIAAAREIGVSVGPGRGSAAGSAVAYC 660

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L IT+IDP+ + LLFERFLNPDR+SMPD DIDF  + R  V+ YV NKYG  +VAQIIT+
Sbjct: 661  LGITNIDPIAYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGANQVAQIITY 720

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV-SLQAIADDSRFREARLADPSV 508
            G++ AK+++RD  R L +P  + D++ KL+PN   + + ++ A A  S  R   L   SV
Sbjct: 721  GTMAAKSSIRDTARVLDLPLFEADKIAKLVPNLKLNKLFNMDAQALKSALRTEELE--SV 778

Query: 509  DRLLEIS-------------QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
              L+ ++             + LEG  R+   HA G++I    ++  VP+     S+L V
Sbjct: 779  RELINLANGNDLGAETIRQAKALEGSVRNTGIHACGVIITPDDITNFVPVSTAKDSELYV 838

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTT 614
            TQF+   +E AGL+K DFLGLKTLTL++ ++  +   +G++++    P DD +TY L   
Sbjct: 839  TQFDNSVVESAGLLKMDFLGLKTLTLIKDTVSLVKHTKGIELNPDFFPIDDVKTYELFQR 898

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
              T+GIFQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RKNG+E I   
Sbjct: 899  GETVGIFQYESPGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFIRRKNGEEPITYD 958

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
                +  LKET G+ +YQEQVM ++Q L+G++  EADVLR+AMGKK ++ +DK K +F+ 
Sbjct: 959  LEACEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQRDVLDKMKPKFVQ 1018

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             A++ G  + +   I++    FA Y FNKSH+  YA ++YQTA++K HYP E++AA ++ 
Sbjct: 1019 QAAEKGHDEKVLEKIWKDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMAAVLSN 1078

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHI 853
             M+++++I  F ++ ++  + ++ P VN     F V D   I + + A+KGVG      I
Sbjct: 1079 NMNDIKQISFFMEECKRMGLTVLGPDVNESFYKFTVNDQGAIRFGIGAVKGVGAGAVDTI 1138

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ--------SL 905
            +    +  + S+ DF  R + + +N++V ESLV++GA DCFG +R Q            +
Sbjct: 1139 VSNRDEGKYLSIADFARRSNPRTINKKVYESLVYSGAFDCFGINRAQFFHVPEGLSQNGI 1198

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            + + KY    + N+ N   ++F         + +L          +   E+ V+  Y +G
Sbjct: 1199 ERLIKYTNDYQYNKNNAAMSLFGGTSDADIPEPSLPPCPEWGLMEKLRYEKNVVSMYITG 1258

Query: 966  HPLDVYK--------------PILRKM--------------GIKGYEESV-------ATI 990
            HP+D Y+               ++ KM              G++  EE V       A I
Sbjct: 1259 HPMDDYRLELEYFCQHKVSQLHLIDKMKAGAGKDADNGQDAGLESPEEGVEDVKTEFAKI 1318

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  ++ +  MV +     T+ G   G +TF + +  YE   F
Sbjct: 1319 KNKDLVVGGMVTAVYHGMTKTGKPYGRMTFEDYSDSYEMALF 1360


>gi|311742780|ref|ZP_07716589.1| DNA-directed DNA polymerase III alpha subunit [Aeromicrobium marinum
            DSM 15272]
 gi|311314408|gb|EFQ84316.1| DNA-directed DNA polymerase III alpha subunit [Aeromicrobium marinum
            DSM 15272]
          Length = 1175

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 387/1075 (36%), Positives = 569/1075 (52%), Gaps = 77/1075 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA  L+ + ++ A    PAIA+TD  NL  A +F  KA A G++P
Sbjct: 6    SFVHLHVHTEYSMLDGASLLDGLFERTAELGMPAIAMTDHGNLHGAYDFYSKARAHGVKP 65

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF-----------PTVPSIVLLVSTAEGYQRLIELVSR 118
            IIG  L+  +  N   + + +  +                + LL  + EG   L  L SR
Sbjct: 66   IIG--LEAYLTPNTHRSEKKRVQWNKGGDDDVAGGGAYTHMTLLAESTEGMHNLFRLSSR 123

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L  +G+         L     +GLI  TG  SG I       + + A +    F+ +F
Sbjct: 124  SSL--EGQYYKPRADRELLHTYAKGLIGTTGCPSGEIQTWLRIGNYEKARESAAEFQDIF 181

Query: 179  G-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            G +  ++ L  H G D   R R+  +++L     LP +ATN+S +   ED +AHD L+ V
Sbjct: 182  GRENFFLELMDH-GLDIETRVRDG-LMRLKRDLALPAIATNDSHYTHPEDADAHDALICV 239

Query: 235  AHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQVHAP 290
            +    +S  +R +     +Y+K+ +EM S++ D   +PEA +NT+ IA RC    QV   
Sbjct: 240  SSGKTISDPNRLKFDGGGYYIKSAAEMRSLWEDKHEMPEACDNTLLIAERC----QVE-- 293

Query: 291  ILPRFIEKECDDIQKE-------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                F E     + +        EE+    +   G+  R  +        + + R+R + 
Sbjct: 294  ----FTESNGGYMARADVPAGHTEESWFVEEVWRGIHARYGETV------SDEVRERTEM 343

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL V+    + GY+L+VADFI WAK N I VGPGRGSGAGS+ AYAL ITD+ PL   L+
Sbjct: 344  ELQVVRDKGYCGYYLVVADFIGWAKDNGIRVGPGRGSGAGSIAAYALRITDLCPLTHGLI 403

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R SMPDFDIDF + RR EVIRYV  KYG ERVA I TFG L++KAA++D  R
Sbjct: 404  FERFLNPERPSMPDFDIDFDERRRAEVIRYVSEKYGSERVAMIATFGRLKSKAAIKDANR 463

Query: 464  ALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLADPSVDRLLEI 514
             L  P++  +++ K +P D     V L A+ DD          FR+   AD  V ++ + 
Sbjct: 464  VLDFPFAMGEKITKALPADVMGKGVPLPALFDDKHSRYGDGKDFRDLHAADAEVRKIYDT 523

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            +  LEG  R    HAAG+++   PL  +VP+ +  +    +TQF+    E  GL+K DFL
Sbjct: 524  ALGLEGQIRQWGVHAAGVIMSSEPLIDIVPIMKREQDGAIITQFDYPMCESLGLVKMDFL 583

Query: 575  GLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT+L  ++ +  + RGV + L  + FDD E Y LL    TLG+FQL+   MR  L 
Sbjct: 584  GLRNLTVLDDAVSNIRSNRGVDLVLEDLTFDDPEAYALLGRGDTLGVFQLDGGPMRALLR 643

Query: 634  GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQG 687
             MQPD  EDI A+++LYRPGP+  ++ V Y  RK GK+ I  IHP     + P+L  T G
Sbjct: 644  QMQPDNFEDISAVIALYRPGPMGANSHVNYALRKTGKQPIDYIHPELTEALKPILGTTYG 703

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQVM IAQ L+G++L +AD LRRAMGKK +E ++K+   F +G  + G SK    
Sbjct: 704  LIVYQEQVMSIAQELAGFTLGQADNLRRAMGKKKREVLEKEFVGFEAGMMERGYSKGAIK 763

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++++L  FADY FNK+H+AAY VISY TA++K  YP E++AA +T    + +K   +  
Sbjct: 764  TLWDILVPFADYAFNKAHSAAYGVISYWTAYLKARYPAEYMAALLTSTRGDKDKSAIYLG 823

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
            + R+  IQ++PP VN     F      I + L+AI+ VG      I+E      +    D
Sbjct: 824  ECRRLGIQVLPPDVNDSIGTFASVGEDIRFGLSAIRNVGDNVVAGIVEGRQAGAYTDFPD 883

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F  +V     N+R+L+SL+ +GA D  G+ R  L    D        +++N     +++F
Sbjct: 884  FLDKVPLHVCNKRMLDSLIKSGAFDSLGHRRRALTTIADEAVDAYVDLKRNAAIGQDSLF 943

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGIK 981
                    D  +    SV +    +E       E+ +LG Y S HPL   + +LR     
Sbjct: 944  ----DGLDDASSGITISVPDQMPEWEKTQLLAFERDMLGLYVSDHPLRGLEHVLRASSDC 999

Query: 982  GYEE-SVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               E  V T R  G+ + +  ++    ++ ++KG     +T  +     E   FP
Sbjct: 1000 SLGELMVDTERADGSTVTICGLITGVSRRMSKKGDTWASITVEDLEGGVEVMVFP 1054


>gi|257413195|ref|ZP_04742281.2| DNA polymerase III, alpha subunit [Roseburia intestinalis L1-82]
 gi|257204357|gb|EEV02642.1| DNA polymerase III, alpha subunit [Roseburia intestinalis L1-82]
          Length = 1162

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 371/1056 (35%), Positives = 598/1056 (56%), Gaps = 50/1056 (4%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            ++S SF HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F + A AA
Sbjct: 4    KQSMSFTHLHVHTEYSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYKAARAA 63

Query: 66   GIQPIIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            GI+P++GC++ +       +  + G   +     +VLL    +GYQ L+++VS+ ++ + 
Sbjct: 64   GIKPVLGCEVYVAPGSRFDRELSHGDDRYY---HLVLLAENNQGYQNLMKIVSKGFV-EG 119

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183
                 R+ +  L E   EG+I L+   +G + R       + A++    ++K FG    +
Sbjct: 120  YYYKPRVDMEVL-ETYHEGIIALSACLAGEVQRYLVRGLYEEAKETACKYEKCFGKGNFF 178

Query: 184  VNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ H   D +   + +++++    + LVATN+  +   ED E HD+L+ +     +S 
Sbjct: 179  LELQDHGIPDQKTVNAGLMRMSEETGIELVATNDVHYTYAEDAEPHDILLCLQTGKKLSD 238

Query: 243  KDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            ++R R     Y +K+  EM ++F    +A++NT +IA RC+  ++     LP F   E  
Sbjct: 239  ENRMRYEGGQYFVKSEEEMRALFPYAAQAIDNTQKIADRCNVEIEFGVTKLPHFDVPEGY 298

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D        L      GL  R            ++   +LD+EL+VI +M +  YFLIV 
Sbjct: 299  D----SWTYLNKLCHEGLVRRYPD-------KHEELLPKLDYELSVIQKMGYVDYFLIVW 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI +A+ + IPVGPGRGS AGS+ +Y   IT+IDP+R++LLFERFLNP+R++MPD DID
Sbjct: 348  DFINYARTHGIPVGPGRGSAAGSLVSYTTGITNIDPIRYNLLFERFLNPERVTMPDIDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR EVI YV  KYG + V QI+TFG+L A+  +RDVGR + +PY+  D + K IPN
Sbjct: 408  FCYERRSEVIDYVIEKYGKDCVTQIVTFGTLAARGVIRDVGRVMDLPYNFCDTIAKNIPN 467

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +  +A+  +   R    +D +V RL++++++LEGL RH S HAAG+VI  + + +
Sbjct: 468  ELNITID-KALIMNPELRSMYESDETVKRLIDMAKRLEGLPRHTSMHAAGVVISQKAMDE 526

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
             VP+ R     +  TQF M  IE+ GL+K DFLGL+TLT++  ++  + +  G+K+D+  
Sbjct: 527  YVPLSRSSDGTI-TTQFVMTTIEELGLLKMDFLGLRTLTVISDAVKLVEKNHGIKIDVDN 585

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            I +DD +    + T    G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  
Sbjct: 586  IDYDDKKVLDSIGTGRCDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPK 645

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y   KN  E +  +   ++P+L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM KK
Sbjct: 646  YIKGKNEPESVTYVCKELEPILEPTYGCIVYQEQVMQIVQNLAGYTMGQADNIRRAMSKK 705

Query: 721  IKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
             +  +D +++ F        I G   NGIS+  A  I++ +  FA Y FNKSHAAAYAV+
Sbjct: 706  KQYVIDAERQNFVYGNEEQGIKGCIANGISEQAANQIYDSMVDFAKYAFNKSHAAAYAVV 765

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTA++K +YPVEF+AA MT  +DN  K+ ++    RQ  I+++ P +N     F    
Sbjct: 766  AYQTAYLKYYYPVEFMAALMTSVVDNTRKVAEYIYSCRQMGIKVLSPDINEGEGRFLATK 825

Query: 833  NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + I Y + AIK +G      I+ E  A+  + +L DF SRV  +++N+R +E+L+ AGA 
Sbjct: 826  DGIRYGMYAIKSIGRQVIDIILAEREANGKYTTLSDFLSRVAGREVNKRAVENLIKAGAC 885

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKI-TLEKFSVE 946
            D    +R Q+L   + +       +KN      ++F      EK  +  +   +E+++ E
Sbjct: 886  DGLDGNRQQMLLVYNTLIDNLNQEKKNSLAGQMSLFDLFSEEEKKAYEVRFPNVEEYTKE 945

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY--------EESVATIRGN-NIRL 997
               ++   E+ VLG Y SGHPL+ Y+   RK  I           E +   I+ N ++ +
Sbjct: 946  ---IKLGFEKEVLGIYLSGHPLEEYEEKWRK-NISAVTADFMLDEETNAVKIKDNQSVVI 1001

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              ++  K  K T++   + ++T  +     E   FP
Sbjct: 1002 GGIITEKTIKYTKQNKAMAFITVEDLFGTVEVIIFP 1037


>gi|297571263|ref|YP_003697037.1| DNA polymerase III subunit alpha [Arcanobacterium haemolyticum DSM
            20595]
 gi|296931610|gb|ADH92418.1| DNA polymerase III, alpha subunit [Arcanobacterium haemolyticum DSM
            20595]
          Length = 1182

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 378/1073 (35%), Positives = 580/1073 (54%), Gaps = 67/1073 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+GA  +N ++ ++A  +QPA+AITD   LF A E  + A AAGI+P
Sbjct: 5    SFAHLHVHTDYSLLDGAAKINKLVAEVARLEQPAVAITDHGYLFGAYEMYKAATAAGIKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPT-------------VPSIVLLVSTAEGYQRLIELV 116
            IIG  L+  M       +Q +  + T                + LL     G   L  + 
Sbjct: 65   IIG--LEAYMTPGTSRFDQTRQLWGTPAQRSDDVSARGAYTHMTLLSENNTGMHNLFRMN 122

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S   L  Q  +  R+    L E   +GLI   G  SG I           A K     + 
Sbjct: 123  SLASLEGQMGKWPRMDRELL-ETYHDGLIGTAGCPSGEIQTRLRLGQWDEALKAAGELQD 181

Query: 177  LFG-DRLYVNLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +FG D  YV +  H G D  R  Q  ++++A     PL+ATN+S ++  ED +  D ++ 
Sbjct: 182  IFGKDNFYVEVMDH-GLDIERRVQNDLLKIARMIGAPLIATNDSHYVKREDRDIQDAMLC 240

Query: 234  VAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA--- 289
            +   + +   DR +   D +Y+K+  EM   F DLPEA++NT+ +A RC+   Q  A   
Sbjct: 241  INSGSTLMDPDRFKFDGDGYYIKSSEEMHRQFEDLPEAIDNTLVVAERCNVSFQTTADGI 300

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +P F     +D    E +   N+  AGL  R        G      R+R D+E+ VI 
Sbjct: 301  SYMPEFPVPPGED----ETSWFINQVEAGLLKRY------NGTVPAHVRERADYEVGVIT 350

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M F GYFL+V+D+I+WAKKN I VGPGRGSGAGS+ AYAL IT +DP++  LLFERFLN
Sbjct: 351  SMGFPGYFLVVSDYIKWAKKNGIRVGPGRGSGAGSMVAYALEITQLDPIKHELLFERFLN 410

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+S+PD D+DF   RRDEVI+YV+ KYG ++VAQ++T+G+++ K AL+D  R L MP+
Sbjct: 411  PERVSLPDIDVDFDDRRRDEVIKYVEEKYGSDKVAQVVTYGTIKTKQALKDAARVLGMPF 470

Query: 470  SQVDRLCKLIPND-PAHPVSLQAI--------ADDSRFREARLADPSVDRLLEISQKLEG 520
               D+L K +P D     ++++ I         +   FRE   ++    R+ + +  LEG
Sbjct: 471  QMGDQLTKALPPDVQGKSIAVKDIYNPEAARYNEAGEFREFVDSNAEAKRVFDFALGLEG 530

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            + R    HA  +++    L+ ++P+ + ++    +TQF     E+ GL+K DFLGL  LT
Sbjct: 531  MTRQTGVHACAVIMSSTALTDVIPIMKRLQDGAIITQFEYPQCEELGLVKMDFLGLSNLT 590

Query: 581  LLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            +++ +L  +   G +  ++  IP DD ETY LL    TLGIFQL+S GMRQ L+ M+PD 
Sbjct: 591  VIEGALTNIRNNGKEAPNIDEIPLDDVETYELLARAETLGIFQLDSPGMRQLLKQMKPDT 650

Query: 640  IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVIIYQE 693
              DI A+ +LYRPGP+  ++   Y  RKNG ++   IHP     ++ +L  T G+I++QE
Sbjct: 651  FADISAVSALYRPGPMGANSHTNYALRKNGLQEKTPIHPELATALEDILGNTHGLIVFQE 710

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVM+IAQ L+G++L +AD+LR+AMGKK  + + KQ + F  G   +G S      ++++L
Sbjct: 711  QVMRIAQKLAGFTLGQADILRKAMGKKKADVLQKQFKGFAQGMRDHGYSDECINTLWDIL 770

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNKSH+ AYA+++YQTA++K HYP E++A+ +T   +N  K+  +  D R+  
Sbjct: 771  VPFAQYAFNKSHSEAYALVTYQTAYLKAHYPSEYMASLLTSNQNNKTKVATYLADTRRMG 830

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV 872
            I++  P VN     +    N +   L++++ VG      I+E   +K  + S +DF  +V
Sbjct: 831  IRVNVPDVNKSMDVYSAVGNEVRVGLSSVRNVGKNVVDGIIETRKEKGEYTSFQDFLDKV 890

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
             +  LN+R +E L+ AGA D  GYSR  L+   +   +    V++N      ++F    G
Sbjct: 891  PAAVLNKRAVECLIKAGAFDSLGYSRRALVSIHEEAIEAVLPVKRNEAGGQFDLFG---G 947

Query: 933  TFSDKITLEKFSVE-------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG---IKG 982
               +    + F+VE       +   +   E+ +LG Y S HPL   +  L ++    + G
Sbjct: 948  LGENNPIAQSFNVEIPDLPEWDKKEKLNIERDMLGLYVSDHPLSGLEAFLDRVADHTVLG 1007

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW--VTFSEPAKEYEANFFP 1033
             +     + G  + +A ++ S Q + ++K  +  W   T  +     E NFFP
Sbjct: 1008 IQNDENPVDGQMVTVAGLITSVQTRISQKNGKT-WATATIEDFTGSIEVNFFP 1059


>gi|227484665|ref|ZP_03914981.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
 gi|227237385|gb|EEI87400.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
          Length = 1148

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 364/1060 (34%), Positives = 587/1060 (55%), Gaps = 60/1060 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  F HL +H+ YSLL+G   ++ +LD+       ++AITD   ++  +EF ++A   GI
Sbjct: 2    TTKFTHLHLHTEYSLLDGFTRIDELLDRCKELGMDSVAITDHGQMYGVIEFYKQAQKRGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPT---VPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +PIIGC++ +  +D+       K   PT      ++LL     GY+ L+++VS  Y+ + 
Sbjct: 62   KPIIGCEVYVSERDH-------KIKDPTNRRYYHLILLAENNTGYKNLVKIVSEAYV-NG 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183
                 R+   +++   TEGLI L+   +G +++         AE+  L ++K FG    +
Sbjct: 114  FYYKPRVSFDFIKN-HTEGLIALSACLNGEVNQRILEGDMGGAEETALKYEKAFGKGSFF 172

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHE---LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            + +Q H   ++ + +Q ++  Y H+   + +VATN+  ++++ED    DVL+ +    ++
Sbjct: 173  LEVQDHGMAEQKKVNQGIK--YLHKKLGIEMVATNDVHYINKEDSYYQDVLLCIQTGALI 230

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
              ++R R+ T + YLK+   M +IF D   A+ENT +IA RC   ++ H P LP +    
Sbjct: 231  KDENRMRMPTREFYLKDADTMATIFKDYERAIENTRKIADRCQVEIKFHQPHLPYY---- 286

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYF 357
                 K  E  L N     L   L    +A+ Y     +  +R   E++VI  M +  YF
Sbjct: 287  ----TKVPEG-LTNLDYLKL---LVNDGLAQKYDQVTDEIVKRAKMEIDVINSMGYVDYF 338

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DF+ +A+KN+I VGPGRGS AGS+ +YAL IT IDPL+++L+FERFLNP+R+SMPD
Sbjct: 339  LIVWDFVNYARKNDIAVGPGRGSAAGSLVSYALDITQIDPLKYNLIFERFLNPERVSMPD 398

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             DIDF    RD+V+ YV + YG + V+QI+TFG +QA+ A+RDVGR L + Y +VD + K
Sbjct: 399  IDIDFDYVLRDKVVEYVNDLYGRDHVSQIVTFGRMQARNAIRDVGRVLDIAYGKVDTIAK 458

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
             IP      +  +A+ +   FR +   D    RL++ ++KLE L RH S HAAG+VI   
Sbjct: 459  QIPATIGMTID-KALVESDAFRASYEKDAEGKRLIDTAKKLEALPRHTSIHAAGVVISKD 517

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKV 596
            PL+ ++P+   + +D  V+QF+M  IE+ GL+K DFLGL+ LT+++ ++ D     GV +
Sbjct: 518  PLTDIIPLA--LSNDQVVSQFDMTEIEELGLLKMDFLGLRNLTVIKDTIKDIKKNYGVDL 575

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+  I  +D           T+G+FQ ES+GMR  L+ ++P   +D+IA  SL+RPGP+D
Sbjct: 576  DIRKIDVNDVNVIKQFNQAKTIGLFQFESAGMRAFLKNLKPTVFDDLIAANSLFRPGPMD 635

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I  Y + KN  + +  +   + P+L  T G+I+YQEQVMQI Q L+GYSL EAD LRRA
Sbjct: 636  EIPKYIHNKNNPDDVTFLDEKLKPILGVTYGIIVYQEQVMQIVQQLAGYSLGEADNLRRA 695

Query: 717  MGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKS 764
            M KK    M++ ++ FI+            GA +NG+ + +A  I++ +  FA Y FNKS
Sbjct: 696  MSKKKMAVMEENRDVFINGKVGEDGKVIIPGAVRNGVDRQVANTIYDEMISFAKYAFNKS 755

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAY++++ QTA++K +YP E++A  ++  MD   K+  +  + ++  I+++ P +N  
Sbjct: 756  HSAAYSLVAVQTAYLKHYYPEEYMANLISSVMDQSGKLYSYVSETKRLGIEVLAPDINKS 815

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV---DSKKLNRR 880
               FKV D +I + L+ IK VG      I++A  +   F + ++F  RV   D + LN++
Sbjct: 816  YGSFKVADKKIIFGLSGIKNVGLNLIDSIVKARDEGGAFTNFKNFLERVEDYDPRALNKK 875

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             +ESL+ AGA D  GY+R  L+   +          K       N+           I +
Sbjct: 876  GIESLIKAGAFDSLGYTRSSLMAIFEKAINTVHDNNKINVTGQINLLDMASAKEDTDIDM 935

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG--IKGYEES-----VATIRGN 993
                     V+ + E+ VLGFY S HPL      L  +      Y E      +A++ G 
Sbjct: 936  PNIDEYPKKVKLKLEKEVLGFYISEHPLSERSLALSNIVNFTTNYREELGENRLASLDGK 995

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + +A ++ +K++  T+K   + + +  +     E   FP
Sbjct: 996  FVTMAGIINNKKELTTKKRDLMAFASLEDMYGNIEMVIFP 1035


>gi|302672122|ref|YP_003832082.1| DNA polymerase III E DnaE1 [Butyrivibrio proteoclasticus B316]
 gi|302396595|gb|ADL35500.1| DNA polymerase III E DnaE1 [Butyrivibrio proteoclasticus B316]
          Length = 1179

 Score =  605 bits (1561), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 386/1081 (35%), Positives = 570/1081 (52%), Gaps = 78/1081 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +   + ++      A AITD   ++  ++F +    AGI P
Sbjct: 2    AFTHLHVHTEYSLLDGSNKIKEYVKRLGELGMTAGAITDHGVMYGVIDFYKACRDAGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ +      +   +          +VLL     GY  L  +VSR +  +      
Sbjct: 62   VIGCEVYV--APGSRFEKETAVSDDRYYHLVLLAENNVGYANLSHIVSRGFT-EGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+ +  L++   EG+I L+   +G I R     +   A++  +    +FG    ++ LQ 
Sbjct: 119  RVDMELLEQY-HEGIIALSACLAGEIPRNIVKGTPDKAKEAAIRLDNIFGHGNFFLELQD 177

Query: 189  HRGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H G    R      +A + EL  PLVATN+  +   +D EAHD+L+ +     VS +DR 
Sbjct: 178  H-GIPEQRMVNASLMALSQELDIPLVATNDCHYTYADDAEAHDLLLCIQTGKXVSDEDRM 236

Query: 247  RVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R     +Y+K+  EM S+F    EAL+NT +IA RC   ++     LP F   E  D   
Sbjct: 237  RYEGGQYYVKSEEEMRSLFPYAQEALDNTQKIADRCHVEIEFGVTKLPHFEVPEGYD--- 293

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADF 363
                 L    + GL  R         Y   D   + +LD+EL VI RM +  YFLIV D+
Sbjct: 294  -SWTYLNKLCLDGLHER---------YPDDDGTLKDKLDYELGVIKRMGYVDYFLIVWDY 343

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I + ++N I VGPGRGS AGS+ +Y + IT+IDP+++ LLFERFLNP+R+SMPD D+DF 
Sbjct: 344  INYCRENGIAVGPGRGSAAGSIVSYCMHITNIDPIKYDLLFERFLNPERVSMPDIDVDFE 403

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR +VI YV  KYG ++V QIITFG+L AK  +RDV R + +PYS  D + K+IP + 
Sbjct: 404  YERRQDVIDYVTEKYGADKVVQIITFGTLAAKGVIRDVARVMDLPYSFGDTISKMIPTEL 463

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A+  +   R    +D +V +L+++ +KLEGL RH S HAAG+VI   P   LV
Sbjct: 464  NITLD-KALEMNPELRSQYESDETVHKLIDMCKKLEGLPRHTSIHAAGVVICSAPAEDLV 522

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--GVK------ 595
            P+ R    ++  TQF M  IE+ GL+K DFLGL+TLT+++ + +F A R  G K      
Sbjct: 523  PLSRSAEGNV-TTQFTMTTIEELGLLKMDFLGLRTLTVIKDATNF-ANRSLGAKPGDANY 580

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +++  I ++D      + +    G+FQLES GM+  ++ ++P  +EDIIA +SLYRPGP+
Sbjct: 581  INIDEIDYNDPAVLASIGSGRCDGVFQLESGGMQSFMKELRPQSLEDIIAGISLYRPGPM 640

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  Y   KN    I    P ++P+LK T G I+YQEQVMQI Q L GY+L  AD++RR
Sbjct: 641  DFIPKYIAGKNDAGAITYQTPELEPILKPTYGCIVYQEQVMQIVQQLGGYTLGRADLVRR 700

Query: 716  AMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            AM KK +  M+ ++  F++        G +  GIS  I   I++ +  FA Y FNKSHAA
Sbjct: 701  AMSKKKQHVMEVERANFVNGNPEENVPGCASKGISPEIGNAIYDSMMDFAKYAFNKSHAA 760

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
             YAV++ QTAW+K +YPVEF+AA MT  +DN  K+  +    R  NI ++PP +N     
Sbjct: 761  CYAVVALQTAWLKYYYPVEFMAALMTSVIDNPGKVSGYIMSCRNMNIALLPPDINEGFDG 820

Query: 828  FKV-----GDN-----------------RIYYSLAAIKGVG-TTTARHIMEASADKPFDS 864
            F V     GDN                  I Y+L AIKGVG    A  + E      F +
Sbjct: 821  FSVTEIDAGDNDKPIPGAVVTTAPGRKKAIRYALTAIKGVGRPVIASIVQERQLHGKFKN 880

Query: 865  LEDFCSRVDSK--KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
            L DF SR+  +   +N+R +E+ + AGA +CF  +R Q +    +I        +N    
Sbjct: 881  LNDFLSRMQGRANDVNKRAVENFIKAGAFECFEGTRKQHMTVYAHIMDQLHNSNRNSMAG 940

Query: 923  HENI--FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
               +  FA E+     +I L         +  E E+ VLG Y SGHPL+ Y  I +K   
Sbjct: 941  QMTLFDFAGEEEKKMYEIPLPDVGEFPRELLLEFEKEVLGIYVSGHPLEEYIGIWKKKIT 1000

Query: 981  KGY-------EESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                      E  V  +R N  + +  ++  K+ K T+    + ++T  +     E   F
Sbjct: 1001 NTTTDFYLDDETGVPVVRDNATVTIGGIISDKKVKYTKTDQIMAFLTVEDLVGSIEVIVF 1060

Query: 1033 P 1033
            P
Sbjct: 1061 P 1061


>gi|160915308|ref|ZP_02077521.1| hypothetical protein EUBDOL_01317 [Eubacterium dolichum DSM 3991]
 gi|158433107|gb|EDP11396.1| hypothetical protein EUBDOL_01317 [Eubacterium dolichum DSM 3991]
          Length = 1027

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 355/1027 (34%), Positives = 587/1027 (57%), Gaps = 63/1027 (6%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL V S+Y+LL+  L++  I+         ++A+TD N +  A+ F        I+PI 
Sbjct: 3    VHLHVRSAYTLLQSTLTIPKIIACTKQHGYQSVALTDKNVMHGAMAFYHACIKENIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +++    DN  +              +LL    +GY  L++L +   LL+ G+ + ++
Sbjct: 63   GMEVEA-AYDNDSL------------GFILLAKNDQGYVDLMKLST---LLNTGEHAKQV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-R 190
                L  + T+  ++LT G    ++         +  K L    + F D  YV++ R+  
Sbjct: 107  SFEELC-LYTKDCVVLTNGDQNIMETYLVKEEIGLLSKLLQLCTQSFTD-FYVSIARNDS 164

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G  + +  ++  L    ++  VA +   F  E + E++  L A+ H  V         +P
Sbjct: 165  GLLKSKNPRLKSLCKEMKIRTVALSRIYFQDEAEEESYKTLCAI-HQQVSVDDRMLNFSP 223

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              Y ++++EM  ++ +  E L  + EIA +C+  +Q    ILP+F  K         E  
Sbjct: 224  KRYYRSQAEMAQLYDE--EDLLASEEIAAKCNVKMQFPQAILPKFKNK----YGVSSEEF 277

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LRN    GL  R+   AI K Y     +QRL++EL+VI  M ++ YFLIV DFI++AK  
Sbjct: 278  LRNLCHKGLAKRMHFQAIPKVY-----QQRLEYELDVIINMHYADYFLIVWDFIRFAKSQ 332

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            NI +GPGRGS AGS+ +Y L IT +DPL+++LLFERFLNP+R+SMPD D DF  +RRDEV
Sbjct: 333  NIYIGPGRGSAAGSLVSYCLGITHVDPLQYNLLFERFLNPERVSMPDIDTDFPDNRRDEV 392

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I YV+  YG  R + IITF +L AK  LRDVGRA+ +   ++D LCK++P+ P   V+L 
Sbjct: 393  IEYVKGLYGSHRASHIITFNTLAAKQVLRDVGRAMNISLREIDSLCKMVPSMP--KVTLD 450

Query: 491  AIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
               ++S RF++   +     +L  IS++LEGL RHAS HAAGIV+ +  +S + P+  DV
Sbjct: 451  YTYENSARFKQKINSSQLYRKLFAISKQLEGLPRHASLHAAGIVLSNDAISSVCPLI-DV 509

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
             + +  TQF M ++E+ GLIK DFLGL+ LT++ + ++ + +    K+D+  IP +D +T
Sbjct: 510  DAGISATQFTMDYMEELGLIKMDFLGLRNLTIIDEVVNLINRDHENKLDIMHIPLNDKKT 569

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + L+    T+G+FQLES GM+  L  M+P C EDI+A V+L+RPGP++NI  Y  R+   
Sbjct: 570  FALIQAVDTVGVFQLESEGMKNLLRKMKPTCFEDIVATVALFRPGPMENIPEYLERRANP 629

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            +K+  IHPL+ P+L+ T G++IYQEQ+MQ+AQ+++G+SL +AD LR+A+ KK  EE+ + 
Sbjct: 630  QKVDYIHPLLKPILENTYGIMIYQEQIMQVAQVMAGFSLGKADNLRKAISKKKGEELARL 689

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K  FI GA + G  + +A++++EL+ KFA+YGFN+SH+ AY +I+YQ A++K + P+ F 
Sbjct: 690  KNDFIQGAKQKGFEEQLAIHVYELIMKFANYGFNRSHSVAYGMIAYQMAYLKANAPLYFF 749

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             + +   + +  K  ++  +A++  I I+ PSVN     +++    + + L  IKG+G  
Sbjct: 750  VSLLNSMIGSESKTSEYIFEAKKRGISILLPSVNFSGNGYRIEKRSLRFPLNGIKGIGNA 809

Query: 849  TARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                I+ E ++   F    DF +R+ +  + ++ +E L++AGALD F  +R  ++ +L++
Sbjct: 810  VCSQILKERNSHGKFRDYFDFVARMSAIHIGKKTMEILIYAGALDEFNINRSSMIATLED 869

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +Y + V+    +  + +FA E  +    I+++    E+ S+  E E+  LGFY S HP
Sbjct: 870  ALRYGELVKIEDAD--QILFAFELVSKPAIISVK----EHRSMLVEKEKECLGFYLSSHP 923

Query: 968  LDVYK--------PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW-V 1018
            +++ +        P++     +GY           +R   M+   +Q +T+ G+ + + V
Sbjct: 924  IELLRKRMNAQLAPLIALKAQRGY-----------VRFLCMIERVKQHRTKNGALMAFAV 972

Query: 1019 TFSEPAK 1025
            +  E +K
Sbjct: 973  SADETSK 979


>gi|260060780|ref|YP_003193860.1| DNA polymerase III subunit alpha [Robiginitalea biformata HTCC2501]
 gi|88784910|gb|EAR16079.1| DNA polymerase III, alpha subunit [Robiginitalea biformata HTCC2501]
          Length = 1453

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 376/1079 (34%), Positives = 585/1079 (54%), Gaps = 80/1079 (7%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--- 58
             Q LE  P F HL  HS +S+L+  + + +++   A  + PA+A+TD  N+  A  F   
Sbjct: 252  VQALEGVP-FAHLHNHSQFSVLQSTMGIKDLVAAAAEYRMPAVALTDHANMMGAFHFVRE 310

Query: 59   --------SQKACAAG---IQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTA 106
                    +++  A+G   + PIIGC+  + + ++N  + + G         +V+L    
Sbjct: 311  VKAHNSNLTEEDRASGKRDLIPIIGCEFFVCEDRNNKSVKDYGY-------QVVMLAKNK 363

Query: 107  EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
            +GY  L ++ S  Y   +G   V      + E   E +I+LTG   G +         + 
Sbjct: 364  KGYHNLAKMSSIAYT--EGFYYVPRIDREVVERYKEDVIVLTGNLYGEVPSKVLNQGEKQ 421

Query: 167  AEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDY 225
            AE+ LL +K+ FG+ LYV + RH   D  R +Q +V LA  HE+ LVATNN+ +  +ED 
Sbjct: 422  AEEALLWWKEQFGEDLYVEVMRHGQEDEDRANQSLVALAKKHEVSLVATNNTYYRRKEDA 481

Query: 226  EAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            EAHD+L+ V      +T + +    R      ++Y K+  EM  +F DLPE++++   I 
Sbjct: 482  EAHDILLCVKEGEKQATPIGRGRGYRFGLPNQEYYFKSPEEMKELFRDLPESIQSIEGII 541

Query: 279  RRCSFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
             +          +LP+F         E   D  ++ E   LR+    G E R        
Sbjct: 542  EKIEPFDLARDVLLPKFEIPEEFRVAEDAADGGKRGENAYLRHITFQGAEKRY------- 594

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
            G   +  R+RLDFEL+ I    + GYFLIV DFI+ A+   + VGPGRGS AGSV AY L
Sbjct: 595  GEITEAIRERLDFELSTIENSGYPGYFLIVEDFIREARNMGVSVGPGRGSAAGSVVAYCL 654

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             IT+IDPL++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV +KYG  +VAQIIT+G
Sbjct: 655  GITNIDPLKYDLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIDKYGANQVAQIITYG 714

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DPAHPVSLQAIAD-DSRFREARLADPSV 508
            ++ AK+++RD  R L +P S+ DR+ KLIPN      +  Q  A+   +FR   LA   V
Sbjct: 715  TMAAKSSIRDTARVLDLPLSEADRIAKLIPNMSKLAKIFGQDEAELKKKFRSDDLA--KV 772

Query: 509  DRLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
            + LL +S+              LEG  R+   HA G++I    ++  VP+     SDL V
Sbjct: 773  NELLNLSEGSDLEAQTVNMARVLEGSLRNTGIHACGVIITPDDITNFVPVATAKDSDLYV 832

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTT 614
            TQF+   +E AGL+K DFLGLKTLTL++ ++  + A+ G+ +     P DD ETY L   
Sbjct: 833  TQFDNSVVENAGLLKMDFLGLKTLTLIKDTVKIVKARHGIDLIPDDFPLDDAETYELFQR 892

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
              T+GIFQ ES GM++ L+ ++P   +D+IA+ +LYRPGP++ I  +  RK+G+E+I   
Sbjct: 893  GETVGIFQYESPGMQKHLKDLKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGQEEITYD 952

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
             P ++  L+ET G+ +YQEQVM ++Q L+G+S  EADVLR+AMGKKI   + K K +F+ 
Sbjct: 953  LPEMEEYLQETYGITVYQEQVMLLSQKLAGFSKGEADVLRKAMGKKIFALLQKLKPKFLD 1012

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            G   NG  + +   I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA ++ 
Sbjct: 1013 GGEANGHPRDVLEKIWKDWEAFASYAFNKSHSTCYAYIAYQTAYLKAHYPAEYMAAVLSN 1072

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHI 853
             M++++++  F ++ R+  + ++ P VN     F V  DN++ + + AIKGVG +    I
Sbjct: 1073 NMNDIKQVTFFMEECRRMGLDVLGPDVNESYYKFAVNKDNQVRFGMGAIKGVGRSAVETI 1132

Query: 854  MEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS-RMQLLQS------- 904
            +E   A+ P+ S+ D   R+D +  N++  E+L  AG  D  G + R Q           
Sbjct: 1133 VENRKANGPYQSIFDLAKRIDLRAANKKAFENLALAGGFDSLGNAHRAQYFDCGTDGVSF 1192

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L+ + ++    +++  +   ++F         +  +       +    + E+ V+G Y S
Sbjct: 1193 LEKVIRFGARFQESENSSQVSLFGGSSEVQIAEPEIPPCEEWGTMETLKREKEVVGIYIS 1252

Query: 965  GHPLDVYKPILRKM-GIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            GHPLD +K  ++     + Y    ++      + LA ++   Q + ++ G   GW  F+
Sbjct: 1253 GHPLDDFKTEIQAFCNTEIYALNDLSPYLNRELSLAGVITDVQHRVSKNGK--GWAIFT 1309


>gi|210614801|ref|ZP_03290330.1| hypothetical protein CLONEX_02544 [Clostridium nexile DSM 1787]
 gi|210150570|gb|EEA81579.1| hypothetical protein CLONEX_02544 [Clostridium nexile DSM 1787]
          Length = 1156

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 382/1053 (36%), Positives = 597/1053 (56%), Gaps = 52/1053 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   +F  ++F + A AAGI+P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMFGVIDFYRAAKAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +        ++           +VLL    +GY+ L ++VSR ++ +      
Sbjct: 62   ILGCEVYVAPGSRFDKSSGASED--RYYHLVLLAENQKGYENLTKIVSRGFV-EGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+ +  L+E   EG+I L+   +G + +       + A+     ++K+FG    ++ LQ 
Sbjct: 119  RVDMELLEEF-HEGIIALSACLAGEVQKNLHRGMYEEAKAAAFRYEKIFGKGNFFLELQD 177

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     Q+++L+    + LVATN+  +   ED + HD+L+ +     ++ +DR R
Sbjct: 178  HGMQEQANVNQQLLRLSQDTGIELVATNDVHYTYAEDEKPHDILLCIQTGKKLADEDRMR 237

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  +M ++F    +A+ENT +IA RC   ++     LP++     D     
Sbjct: 238  YEGGQYYVKSEEQMKALFPYALQAIENTQKIADRCHVEIEFGVTKLPKY-----DVPDGY 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               E  NK        L    + K Y    ++ R+RL++ELNVI  M +  YFLIV DFI
Sbjct: 293  TSWEYLNK--------LCYEGLEKNYENPKKELRERLEYELNVIKTMGYVDYFLIVWDFI 344

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+ ++I VGPGRGS AGS+ +Y L IT+IDP+++ LLFERFLNP+R+SMPD DIDFC 
Sbjct: 345  KYARDHDIMVGPGRGSAAGSIVSYCLGITNIDPIKYQLLFERFLNPERVSMPDIDIDFCF 404

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YV  KYG +RV QI+TFG++ A+  +RDVGR + +PY+ VD + K+IP +  
Sbjct: 405  ERRQEVIDYVVRKYGSDRVVQIVTFGTMAARGVIRDVGRVMNLPYAFVDSISKMIPTELN 464

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  +S  R+    D  V  L+++S++LEGL RH S HAAG+VI  + + + VP
Sbjct: 465  MTLD-RALTMNSELRDLYENDEQVKNLIDMSKRLEGLPRHTSMHAAGVVISQKSVDEYVP 523

Query: 545  MYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--GVKVDLSLI 601
            +   + SD  V TQF M  +E+ GL+K DFLGL+TLT++Q ++  LA++  G  +D+  I
Sbjct: 524  L--SLGSDGSVTTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVR-LAEKSTGKTIDIDHI 580

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +DD      + T  T GIFQLES+GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y
Sbjct: 581  DYDDKAVLDSIGTGRTDGIFQLESAGMKSFMKELKPQSLEDIIAGISLYRPGPMDFIPQY 640

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               KN    I    P + P+L+ T G I+YQEQVMQI + L+GY+L  +D++RRAM KK 
Sbjct: 641  IKGKNDVNAITYDCPQLKPILEPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKK 700

Query: 722  KEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
             + M K+++ F        + G   NGIS+ +A  I++ +  FA Y FNKSHAAAYAV++
Sbjct: 701  GDVMQKERQNFVYGNEAEGVPGCIANGISEQVANKIYDEMIDFAKYAFNKSHAAAYAVVA 760

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K +YPVEF+AA MT  +DN  K+ ++    RQ  I+I+PP +N     F V + 
Sbjct: 761  YQTAYLKYYYPVEFMAALMTSVIDNPGKVAEYIYSCRQMGIEILPPDINKGEGKFSVDNG 820

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y LAAIK +G      I+ E   +  F +L+DF  R+  K++N+R +ES + +GA D
Sbjct: 821  NIRYGLAAIKSIGKPVIEAIIAEREKNGLFKNLKDFIERLSGKEVNKRTIESFIKSGAFD 880

Query: 893  CFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
                +R Q +    + LD + +  ++    + +  + +   +K  F   I L        
Sbjct: 881  SLHGTRKQFMVIYVKILDQVNQERKYSMTGQMSLFDIVDEEQKKEFD--IQLPNVGEYEK 938

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVAT-IR-GNNIRLAAM 1000
                  E+ VLG Y SGHP+  Y+   RK      M  +  EES  T +R G    +  +
Sbjct: 939  ETMLAFEKEVLGIYISGHPMQEYEEKWRKNISATTMDFQYDEESGHTKVREGAKEIIGGI 998

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +K  K T+    + ++T  +     E   FP
Sbjct: 999  ITNKTIKHTKTNKTMAFLTIEDLVGTVEVVVFP 1031


>gi|227497604|ref|ZP_03927825.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226832930|gb|EEH65313.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 1197

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 370/1081 (34%), Positives = 588/1081 (54%), Gaps = 70/1081 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL VH+ YS+L+GA  + + + +     QPA+AITD   +F A EF + A  AG
Sbjct: 12   KKDDFVHLHVHTDYSMLDGAGKIKDYVAEAKRLGQPALAITDHGYMFGAYEFYEAARKAG 71

Query: 67   IQPIIGCQLDI----------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            I+PI+G +  +                + Q +  ++ +G     +   + LL    EG  
Sbjct: 72   IKPIVGVEAYMTPGTSRFDKTRVFWGEESQRSDDVSARG-----SYTHMTLLSRNDEGLH 126

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L+ L S   L  Q  +S R+    LQ   + GLI  +G  S  I         + A + 
Sbjct: 127  NLMRLDSYASLEGQWGKSPRMDRELLQRYAS-GLIGTSGCPSSEIQTRLRLGQWEEALRC 185

Query: 171  LLTFKKLFGDRL-YVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAH 228
                + +FG    YV L  H      R ++ +++LA     PL+ATN+S ++  ED    
Sbjct: 186  AGELQDIFGKEFFYVELMDHGLEIEQRVTKDLLRLAKEIGAPLLATNDSHYVRPEDRTIQ 245

Query: 229  DVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSF---I 284
            D ++ +   +V+S  DR +   D +YL+   EM  +F ++P+A +NT+ +A +C      
Sbjct: 246  DAMLCINSGSVLSDPDRFKFDGDTYYLRPGREMRELFREMPQACDNTLLVAEQCDVHFAT 305

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            +   A  +P F   E + +    E+    +   G++ R        G   +D R++ ++E
Sbjct: 306  VDEGASFMPAFPVPEGETM----ESWFIKECWKGMDKRFG------GNIPEDCRKQAEYE 355

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            + VI +M F GYFL+VAD+I WAK + I VGPGRGSGAGS+ AYA+ IT+++PL+  L+F
Sbjct: 356  IGVIVQMGFPGYFLVVADYINWAKNHGIRVGPGRGSGAGSMVAYAMGITELNPLQHGLIF 415

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DF + RR+EVI YV+ KYG ++++Q++T+G ++AK +L+D  R 
Sbjct: 416  ERFLNPERISMPDIDVDFDERRREEVIDYVKAKYGADKISQVVTYGVIKAKQSLKDSSRV 475

Query: 465  LQMPYSQVDRLCKLIPND-PAHPVSLQAI--ADDSRFREA------RLADPSVDRLLEIS 515
            +  PY+  DRL K +P       ++++ I   +D R+ EA         DP   +++E++
Sbjct: 476  MGYPYAVGDRLTKAMPPTIMGKDITIKGIFNPEDERYGEAAEFRALHAEDPDAQKIVELA 535

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            Q LEG+ R    HA  +++    L+ ++PM + ++    +TQF+    E  GL+K DFLG
Sbjct: 536  QGLEGMTRQWGVHACAVIMSSATLTDIIPMMQRLQDGAYITQFDYPTCEHLGLLKMDFLG 595

Query: 576  LKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L+ LT++  +L+ +   G + +D+  +  DD ETY LL+   TLG+FQL+  GMR  L  
Sbjct: 596  LRNLTVISDALENIVANGKEPLDIDHVALDDAETYQLLSRGETLGVFQLDGGGMRTLLRL 655

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQGV 688
            M+PD  EDI A+ +LYRPGP+  ++   Y  RKNG+++I  IHP     ++P+L  T G+
Sbjct: 656  MKPDNFEDISAVGALYRPGPMGAESHTNYALRKNGQQEITPIHPELKEALEPILGNTYGL 715

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQVM+IA  L+G+++ +AD LR+AMGKK  + + K    F +G   NG SK     
Sbjct: 716  IVYQEQVMKIATDLAGFTMGKADALRKAMGKKKMDILAKMFVEFEAGMVANGFSKESVKT 775

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            +++++  FA Y FNK+H+AAY V+SY TA++KTHYP E++AA +T + DN +K+  +  +
Sbjct: 776  LWDVVVPFAKYAFNKAHSAAYGVVSYWTAYLKTHYPTEYMAALLTSQKDNKDKLALYLGE 835

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLED 867
             R   I+++PP VN     F    + I + L AI+ VG      I+ A  ++  F S ED
Sbjct: 836  CRHMGIKVLPPDVNASRAQFSAVGSDIRFGLGAIRNVGANVVDGIVAAREEQGDFTSFED 895

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F  +V +   N+R ++SL+ AGA D  G SR  L    ++       V++N      ++F
Sbjct: 896  FLDKVPAVVCNKRTIDSLIKAGAFDSLGKSRRSLQACHEDFVDEIIGVKRNEAVGQFDLF 955

Query: 928  AHEKGT--FSDKITLEKFSVENSSV----------RFENEQRVLGFYFSGHPLDVYKPIL 975
            A   G    S+        V +S V          +   E+ +LG Y S HPL   + +L
Sbjct: 956  ASLGGGDQASEDPAFGSGPVFSSEVPDLPEWDKKDKLAFERDMLGLYVSDHPLLGLEGML 1015

Query: 976  RKMG---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             K+    I    E+     G  + +A ++ S Q+K T++G+        +     EA FF
Sbjct: 1016 SKLADVEIADLLENEERPDGAMVTVAGLITSLQRKTTKQGNLWAIAQVEDLGGTVEALFF 1075

Query: 1033 P 1033
            P
Sbjct: 1076 P 1076


>gi|301330018|ref|ZP_07222702.1| DNA polymerase III, alpha subunit [Escherichia coli MS 78-1]
 gi|300843929|gb|EFK71689.1| DNA polymerase III, alpha subunit [Escherichia coli MS 78-1]
          Length = 742

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 328/759 (43%), Positives = 476/759 (62%), Gaps = 34/759 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
           +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59  DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNK
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNK 742


>gi|326335784|ref|ZP_08201964.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga sp.
            oral taxon 338 str. F0234]
 gi|325692023|gb|EGD33982.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga sp.
            oral taxon 338 str. F0234]
          Length = 1485

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 373/1081 (34%), Positives = 578/1081 (53%), Gaps = 85/1081 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--- 61
            L +S  F HL  HS +S+L+   S+ +++   A +  PA+A+TD  N+  A  F+++   
Sbjct: 250  LLQSAPFAHLHNHSQHSVLQSTASIADLVTAAAKENMPAVALTDHGNMMGAFHFTKEVAK 309

Query: 62   ------------------ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
                              A    I+PIIGC+  I  +++L  T +          +VLL 
Sbjct: 310  HNKEAKAKNAKLEEEGKPATHTLIKPIIGCEFYI-CENHLDKTKKDNGY-----QVVLLA 363

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
               +GYQ LI++ S  Y   +G   V      + E   + LI+L+G   G I        
Sbjct: 364  KNKDGYQNLIKMASIAYT--EGFYYVPRIDKGIVEQYKDQLIVLSGNLQGEIPSKILNLG 421

Query: 164  SQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSE 222
            ++ AE+ LL +K+ F +  Y+ L RH   +  R + V ++LA  H + LVATNN+ ++S 
Sbjct: 422  NRQAEEALLWWKEHFQEDFYIELMRHGQENENRANAVLIELAKKHGVKLVATNNTYYISP 481

Query: 223  EDYEAHDVLMAVA----HSTVVSQKDRPR---VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +D  AHD+L+ V      +T + Q    R      ++Y K+  +M  +F D+PEA+ +  
Sbjct: 482  QDANAHDILLCVKDGEKQATTIGQGRGFRNGLPNEEYYFKSSQQMKELFKDIPEAILSIK 541

Query: 276  EIARRCSFILQVHAPILPRF-----IEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIA 329
            EI  + +        +LP+F      + E D   K+ EN+ LR+    G + R  +    
Sbjct: 542  EIIDKITPYELARNILLPKFSIPKEFQMEGDPTGKKGENKYLRHLTYLGAKKRYKE---- 597

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                  + R+RLDFEL++I +  + GYFLIV DFI  A+   + VGPGRGS AGS  AY 
Sbjct: 598  ---LTNEVRERLDFELSIIEKTGYPGYFLIVEDFITAARNMGVSVGPGRGSAAGSAVAYC 654

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L IT+IDP+++ LLFERFLNPDR+SMPD DIDF  D R  V+ YV  KYG  +VAQI T+
Sbjct: 655  LGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFEDDGRGRVLDYVIGKYGANQVAQIATY 714

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLAD-P 506
            G++ AK+++RD  R L +P  + D++ KLIPN     +SL+ I    D   +E   +D P
Sbjct: 715  GTMAAKSSIRDTARVLDLPLKEADQIAKLIPN-----ISLKKIFSLTDEELKEKVGSDLP 769

Query: 507  SVDRLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
             +D+L +I++              LEG  R+   HA G++I    ++  VP+     SDL
Sbjct: 770  KIDKLKKIAEGHDLSAKTVQQACILEGSVRNTGIHACGVIITPDDITNFVPVMLAKDSDL 829

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             VTQF+   +E AGL+K DFLGLKTLT+L+ ++  + +R G ++D+  IP DD  TY L 
Sbjct: 830  FVTQFDNSVVESAGLLKMDFLGLKTLTILKDAVSLIQKRHGFELDIDHIPLDDKPTYALF 889

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
                T+GIFQ ES GM++ +  ++P    D+IA+ +LYRPGP+D I  + +RK G E I 
Sbjct: 890  QRGETIGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPMDYIPSFIHRKQGIEPIT 949

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
                 ++  LK+T G+ +YQEQVM ++Q L+G++  EAD LR+AMGKK+K+ + + K +F
Sbjct: 950  YDLADMEEYLKDTYGITVYQEQVMLLSQKLAGFTKGEADKLRKAMGKKLKDVLAEMKPKF 1009

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I G  K G    +   I++    FA Y FNKSH+  YA I+YQTA++K +YP EF+AA +
Sbjct: 1010 IEGGGKKGHPAEVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKANYPAEFMAAVL 1069

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTAR 851
            +  M++++ I  F  +  +  I+++ P VN     F V  +  I + + A+KG+G     
Sbjct: 1070 SNNMNDIKSISFFLSECHRMGIKVLSPDVNESEYKFTVNKEGAIRFGMGAVKGLGKAAVD 1129

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS------ 904
             I+E      + S+ D   R+D K  N++  ESL  AG  D F    R Q          
Sbjct: 1130 TIVETRKSGAYQSIFDMVKRIDLKSANKKAFESLALAGGFDSFPEVHRAQFFHQEPSENM 1189

Query: 905  --LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              L+ I +Y    +++  +   ++F     T   +  +      +   +   E+ V+G Y
Sbjct: 1190 VFLEKILRYGAKAQESAKSIQLSLFGDSPETQIPEPKMPYTEEWSPMEKLRREKEVVGIY 1249

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             SGHPLD++K  L+ +  K   E    + G  N +     +++K + KT K  + GW  F
Sbjct: 1250 ISGHPLDIFKYQLQYLCNKEVIELSGGLEGLENQVVRFGGIITKTEHKTSKTGK-GWGIF 1308

Query: 1021 S 1021
            +
Sbjct: 1309 T 1309


>gi|238923437|ref|YP_002936953.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
 gi|238875112|gb|ACR74819.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
          Length = 1181

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 372/1061 (35%), Positives = 580/1061 (54%), Gaps = 59/1061 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL  H+ YSLL+G+  +   + ++      + AITD  N++  +EF + A A  I P
Sbjct: 17   SFCHLHTHTEYSLLDGSNKIKEYVKRVKELGMNSAAITDHGNMYGVVEFYKTAKANDINP 76

Query: 70   IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            +IGC++ +       + T+ G   +     ++LL     GY  L+++VS +   +     
Sbjct: 77   VIGCEVYVAPNSRFDRETSHGDDRYY---HLILLAENNTGYANLMKIVS-IGFTEGYYYR 132

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDR----AFFFNSSQVAEKRLLTFKKLFG-DRLY 183
             R+    L+    EGLI L+   +G I R     F+  + ++A K    ++  FG D  +
Sbjct: 133  PRVDFETLERY-HEGLICLSACLAGEIPRYIVRGFYDEAKEIARK----YQDCFGKDNFF 187

Query: 184  VNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQ H G D  +    Q+++++   E+ LV TN+  +  E D EAHDVL+ +     VS
Sbjct: 188  LELQDH-GIDDQKLVNQQLLRMSKELEIGLVCTNDVHYTYESDAEAHDVLLCIQTGKKVS 246

Query: 242  QKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             +DR R     + +K+  +M ++F    EA+ENT +IA RC+  L+     +P++   E 
Sbjct: 247  DEDRMRYDGGQFFVKSEEQMRALFPYATEAIENTQKIADRCNVTLEFGNYKIPKYEVPEG 306

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR----LDFELNVIARMKFSGY 356
             D  +    EL  K          +  I  G ++ D  ++    +D+EL +I  M F  Y
Sbjct: 307  YDSAEAFLTELCEKG-------FREKYIGCGEYSADELKKIHADMDYELGIIKTMGFIEY 359

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
             LIV D+I W + ++  VGPGRGS AGS   Y   ITDIDP++++LLFERFLNP+R+SMP
Sbjct: 360  ILIVWDYINWCRTHDCWVGPGRGSAAGSRVCYCTGITDIDPVKYNLLFERFLNPERVSMP 419

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF    R   I YVQ KYGH+ V QI+TFG++ A+  ++ VG+AL  PY++ DRL 
Sbjct: 420  DIDVDFEYAERYRAIEYVQQKYGHDSVTQIVTFGTMAARGVIKSVGKALDFPYAETDRLA 479

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            K++P +    +  +A+  +  F+    +D  V  +++++++LEGL  H S HAAG+VI  
Sbjct: 480  KMVPQELNITID-KALQMNPEFKGIYDSDARVHEMIDMAKRLEGLPNHTSVHAAGVVIYP 538

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVK 595
               S  VP+ R      P  ++NM  +E+ GL+K DFLGL+TLT+L+ S+ +  A RG+ 
Sbjct: 539  GVASDYVPLGR-ANDGSPTAEYNMVQLEELGLLKMDFLGLRTLTVLKDSVKNIKASRGID 597

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD+  I F+D  T   + T  T G+FQLES+GM+  ++ + P   EDI+A +SLYRPGP+
Sbjct: 598  VDIDHIDFNDKGTLDFIGTGKTEGVFQLESAGMQSFMKELSPQSFEDIVAGISLYRPGPM 657

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  Y   KN  ++I  + P ++ +L+ T G I+YQEQVMQI Q L+GY++ +AD +RR
Sbjct: 658  DFIPNYIKGKNNPKEISYVTPELESILEPTYGCIVYQEQVMQIVQKLAGYTMGQADNIRR 717

Query: 716  AMGKKIKEEMDKQK--------ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            AM KK +  +D ++        ER I G   NGI +  A +I++ +  FA Y FNKSHAA
Sbjct: 718  AMSKKKQYVIDAERQSFVYGDEERGIKGCVANGIDEKAANSIYDSMVDFAKYAFNKSHAA 777

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA IS QTAW+K +YPVEF+AA MT  +DN  K  ++    R   I+++PP +N    +
Sbjct: 778  AYAKISVQTAWLKNYYPVEFMAALMTSVIDNSAKAAQYLYSCRDMGIKVLPPDINCGQGE 837

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKL-NRRVLESL 885
            F    + + Y + AIK +G      I+E   +   + +L DF  R   K+L N+R +E+L
Sbjct: 838  FTAEGDHVRYGMYAIKSLGRPVIDQIIEERESGGRYRTLSDFIERTCQKELINKRAIENL 897

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKI-TL 940
            + AGA D    +R Q+     +I    Q  +K+      ++F      ++ +F  K   +
Sbjct: 898  IKAGACDSLDGTRKQMAMVYASIVDRVQHDKKSTMAGQMSLFDLVSDEDRQSFELKYPNV 957

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIRGNN 994
             ++  E +      E+ VLG Y SGHPL+ Y   L+K      +     EES A    +N
Sbjct: 958  GEYDAEEA---LAYEKEVLGIYLSGHPLEKYAATLKKNITANAIDFVLEEESGAVKIEDN 1014

Query: 995  --IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + +  M+ +K  K T+    + ++T  +     E   FP
Sbjct: 1015 AHVVIGGMIATKTIKFTKYNQAMAFITIEDLTGTVEVIIFP 1055


>gi|269956096|ref|YP_003325885.1| DNA polymerase III subunit alpha [Xylanimonas cellulosilytica DSM
            15894]
 gi|269304777|gb|ACZ30327.1| DNA polymerase III, alpha subunit [Xylanimonas cellulosilytica DSM
            15894]
          Length = 1181

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 377/1084 (34%), Positives = 570/1084 (52%), Gaps = 92/1084 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS +S+L+GA  +  ++D++AA  Q A+AITD   LF A EF + A   G++PI
Sbjct: 7    FVHLHVHSEFSMLDGAARIGELVDEVAAQGQKAVAITDHGYLFGAFEFWKTATNKGVKPI 66

Query: 71   IGCQ---------LDIDMQDNLKMTNQGKTPFPTVPS-------IVLLVSTAEGYQRLIE 114
            IG +          D   Q   +    G+ P P   S       + L      G   L  
Sbjct: 67   IGVEAYVTPGTSRFDQKRQLYGQPLPDGR-PDPDDVSARGAYTHMTLWARDNVGMHNLFR 125

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
              S   L  Q  +  R+    LQ   + GL   TG  SG I         + A +     
Sbjct: 126  ASSLASLEGQMGKWPRMDRDLLQRY-SPGLTATTGCPSGEIQTRLRLGQWEEALRAAGEL 184

Query: 175  KKLFG-DRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + LFG +  YV L  H      R ++ +++LA     P+VATN+  ++ E D  + + L+
Sbjct: 185  QDLFGREHFYVELMDHGLEIETRVTKDLLRLAQEIGAPIVATNDLHYVKEADATSQEALL 244

Query: 233  AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
            A+   + +   +R +     +Y+K+ +EM  +F +LPEA+ NT+ IA  C       A  
Sbjct: 245  AINSGSTLDDPNRFKFDGTGYYVKSSAEMARLFRELPEAISNTLLIAESCEVSFDTQANY 304

Query: 292  LPRFI----EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
            +P F     E E     KE EN LR +   G+                D R R D+E+ V
Sbjct: 305  MPHFPVPDGEDEISWFVKEVENGLRRRYPDGI--------------PDDVRTRADYEVGV 350

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I +M F GYFLIVADFI W+K+N I VGPGRGS AGS+ AYA+ IT++DP+ + LLFERF
Sbjct: 351  IIQMGFPGYFLIVADFINWSKRNGIRVGPGRGSAAGSMVAYAMGITELDPIPYDLLFERF 410

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPD D+DF + RR E IRYV  KYG +RVAQI+T+G+++AK A++D  R L  
Sbjct: 411  LNPERVSMPDVDVDFDERRRGEAIRYVTEKYGDDRVAQIVTYGTIKAKQAIKDSARLLGQ 470

Query: 468  PYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            P++  ++L K +P              DP HP   +A    + FR+    DP   R++E+
Sbjct: 471  PFAMGEKLTKAMPPAVMGKDIPLSGIFDPKHPRYAEA----AEFRQVHDVDPEAQRVVEL 526

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++ +EGL R    HAAG+++   PL  ++P+ +  +    +TQF+    E  GLIK DFL
Sbjct: 527  ARGIEGLKRQWGVHAAGVIMSSEPLIDIIPIMKRPQDGAVITQFDYPTSEGLGLIKMDFL 586

Query: 575  GLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT+L  +L+ +   G + V++  +  DD  TY LL    TLG+FQL+   MR  L 
Sbjct: 587  GLRNLTILDDALENIVGNGKEPVEIEKVGLDDPTTYELLARGDTLGVFQLDGGPMRALLR 646

Query: 634  GMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQG 687
             M+PD  ED+ A+++LYRPGP  +++   Y  RKNG ++   IHP L +P+   L  T G
Sbjct: 647  QMRPDNFEDVSAVIALYRPGPMGMNSHTNYALRKNGLQQNTPIHPELAEPLAEVLDTTYG 706

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQV + AQ+L+GYSL +AD+LRRAMGKK KE +DK+   F +G  + G S     
Sbjct: 707  LIVYQEQVQRAAQVLAGYSLGQADLLRRAMGKKKKEILDKEFVPFQAGMRERGYSDAAIQ 766

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++++L  FA Y FNK+H+A Y ++SY TA++K +YP E++AA +    ++ +K+  +  
Sbjct: 767  AVWDVLVPFAGYAFNKAHSAGYGLVSYWTAYLKANYPAEYMAALLQSTREDKDKLALYLN 826

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLE 866
            + R+  I ++PP VN     F      + + L+ ++ VG      I+    +K  + S  
Sbjct: 827  ECRRMGITVLPPDVNVSAAKFTAVGKDVRFGLSGVRNVGANVVDAIVRTREEKGAYTSFT 886

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNK 922
            DF  +V +   N+R +ESL+ AGA D    SR  LL    Q++D++      +   R   
Sbjct: 887  DFLDKVPAVVCNKRTIESLIKAGAFDSLEASRRALLVVHEQAVDSV------ITVKRKEA 940

Query: 923  HENIFAHEKGTFSDKITLEKFSVE-------NSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
                         D      FSV+       +   +   E+ +LG Y S HPL   + +L
Sbjct: 941  EGQFDLFAGFGGDDDDAGMSFSVDVPDLPDWDKKQKLAFEREMLGLYVSDHPLSGLEHVL 1000

Query: 976  RKMGIKGYEESVATIRGNNIR-------LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                 +  + S+AT+ G+  R       +A ++ S Q+K ++ G+    VT  +     E
Sbjct: 1001 ----TRAADTSIATLMGDEGRPENSTVTVAGLITSLQRKMSKNGNPWAAVTVEDLEGSVE 1056

Query: 1029 ANFF 1032
              FF
Sbjct: 1057 VMFF 1060


>gi|291537379|emb|CBL10491.1| DNA polymerase III catalytic subunit, DnaE type [Roseburia
            intestinalis M50/1]
          Length = 1156

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 370/1052 (35%), Positives = 594/1052 (56%), Gaps = 50/1052 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F + A AAGI+P
Sbjct: 2    SFTHLHVHTEYSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYKAARAAGIKP 61

Query: 70   IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I+GC++ +       +  + G   +     +VLL    +GYQ L+++VS+ ++ +     
Sbjct: 62   ILGCEVYVAPGSRFDRELSHGDDRYY---HLVLLAENNQGYQNLMKIVSKGFV-EGYYYK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187
             R+ +  L E   EG+I L+   +G + R       + A++    ++K FG    ++ LQ
Sbjct: 118  PRVDMEVL-ETYHEGIIALSACLAGEVQRYLVRGLYEEAKETACKYEKCFGKGNFFLELQ 176

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H     +   + +++++    + LVATN+  +   ED E HD+L+ +     +S ++R 
Sbjct: 177  DHGIPEQKTVNAGLMRMSQETGIELVATNDVHYTYAEDAEPHDILLCLQTGKKLSDENRM 236

Query: 247  RVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R     Y +K+  EM ++F    +A+ENT +IA RC+  ++     LP F   E  D   
Sbjct: 237  RYEGGQYFVKSEEEMRALFPYAAQAIENTQKIADRCNVEIEFGVTKLPHFDVPEGYD--- 293

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 L      GL  R            ++   +LD+EL+VI +M +  YFLIV DFI 
Sbjct: 294  -SWTYLNKLCHEGLVRRYPD-------KHEELLPKLDYELSVIQKMGYVDYFLIVWDFIN 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+ + IPVGPGRGS AGS+ +Y   IT+IDP+R++LLFERFLNP+R++MPD DIDFC +
Sbjct: 346  YARTHGIPVGPGRGSAAGSLVSYTTGITNIDPIRYNLLFERFLNPERVTMPDIDIDFCYE 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV  KYG + V QI+TFG+L A+  +RDVGR + +PY+  D + K IPN+   
Sbjct: 406  RRSEVIDYVIEKYGKDCVTQIVTFGTLAARGVIRDVGRVMDLPYNFCDTIAKNIPNELNI 465

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+  +   R    +D +V RL++++++LEGL RH S HAAG+VI  + + + VP+
Sbjct: 466  TID-KALIMNPELRSMYESDETVKRLIDMAKRLEGLPRHTSMHAAGVVISQKAMDEYVPL 524

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
             R     +  TQF M  IE+ GL+K DFLGL+TLT++  ++  + +  G+K+D+  I ++
Sbjct: 525  SRSSDGTI-TTQFVMTTIEELGLLKMDFLGLRTLTVISDAVKLVEKNHGIKIDVDNIDYN 583

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +    + T    G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   
Sbjct: 584  DKKVLDSIGTGRCDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPKYIKG 643

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            KN  E +  +   ++P+L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM KK +  
Sbjct: 644  KNEPESVTYVCKELEPILEPTYGCIVYQEQVMQIVQNLAGYTMGQADNIRRAMSKKKQYV 703

Query: 725  MDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            +D +++ F        I G   NGIS+  A  I++ +  FA Y FNKSHAAAYAV++YQT
Sbjct: 704  IDAERQNFVYGNEEQGIKGCIANGISEQAANQIYDSMVDFAKYAFNKSHAAAYAVVAYQT 763

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K +YPVEF+AA MT  +DN  K+ ++    RQ  I+++ P +N     F    + I 
Sbjct: 764  AYLKYYYPVEFMAALMTSVIDNTRKVAEYIYSCRQMGIKVLSPDINEGEGRFLATKDGIR 823

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y + AIK +G      I+ E  A+  + +L DF SRV  +++N+R +E+L+ AGA D   
Sbjct: 824  YGMYAIKSIGRQVIDIILAEREANGKYITLSDFLSRVAGREVNKRAVENLIKAGACDGLD 883

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKI-TLEKFSVENSSV 950
             +R Q+L   + +       +KN      ++F      EK  +  +   +E+++ E   +
Sbjct: 884  GNRQQMLLVYNTLIDNLNQEKKNSLAGQMSLFDLVSEEEKKAYEVRFPNVEEYTKE---I 940

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY--------EESVATIRGN-NIRLAAMV 1001
            +   E+ VLG Y SGHPL+ Y+   RK  I           E +   I+ N ++ +  ++
Sbjct: 941  KLGFEKEVLGIYLSGHPLEEYEEKWRK-NISAVTADFMLDEETNAVKIKDNQSVVIGGII 999

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              K  K T++   + ++T  +     E   FP
Sbjct: 1000 TEKTIKYTKQNKAMAFITVEDLFGTVEVIIFP 1031


>gi|260910104|ref|ZP_05916781.1| DNA-directed DNA polymerase III alpha subunit [Prevotella sp. oral
            taxon 472 str. F0295]
 gi|260635608|gb|EEX53621.1| DNA-directed DNA polymerase III alpha subunit [Prevotella sp. oral
            taxon 472 str. F0295]
          Length = 1235

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 382/1116 (34%), Positives = 587/1116 (52%), Gaps = 105/1116 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------SQ 60
            FVHL VH+ YS+L+G  S+  ++DK  A+    +A+TD  N+F   EF           +
Sbjct: 4    FVHLHVHTYYSILDGQSSIQRLVDKAIANGMGGMALTDHGNMFGTKEFYNYCKKVNAKRK 63

Query: 61   KACAAGIQPIIGCQLDI-------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
            +      +PIIGC++ +        +++N  M+            +++L     GY+ LI
Sbjct: 64   EEGLPAFKPIIGCEMYVARHRKTDKVKENGDMSGY---------HLIVLAKNYTGYKNLI 114

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +LVSR ++ D      R     L E   EGLI+ +   +G + R    N  + A +    
Sbjct: 115  KLVSRAWV-DGYYMRPRTDREDL-ETYHEGLIVCSACIAGEVPRKILRNDIEGAREAAQW 172

Query: 174  FKKLFGDRLYVNLQRHRGYDRY----RESQVVQ---------LAYTHELPLVATNNSLFL 220
            + ++FGD  Y+ LQRH   D Y    RE+  +Q         +A    + +V TN++ F+
Sbjct: 173  YHRVFGDDYYLELQRHEVKDPYIRANREAYPLQQRANKVMLEMAEEMGINVVCTNDAHFV 232

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
             +E+ EAHD L+ ++    +    R   +   + K R EM  +F DLP+A+ NTVEI  +
Sbjct: 233  DQENAEAHDHLLCLSTGKDLDDPTRMLYSKQEWFKTREEMNEVFGDLPQAMRNTVEILNK 292

Query: 281  CSFILQVHAPILP----------------RFIEKECDDIQKEEEN----------ELRNK 314
                   H+PI+P                R  EKE  D    +EN          E + K
Sbjct: 293  VETYSIDHSPIMPFFPIPEDFGTEEQWRERISEKELYDEFTSDENGQNQLPPEEGEDKIK 352

Query: 315  AVAGLE------------VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359
             + G E             +LA     + Y    +++ R+R++FEL+++  M F GYFLI
Sbjct: 353  KLGGYEKLYRIKFEADYLAKLAYDGAKRLYGEPLSEEVRERVNFELHIMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A+   ++ VGPGRGS AGSV AY L IT IDP+++ LLFERFLNPDR+S+PD 
Sbjct: 413  VQDFINTAQNELDVMVGPGRGSAAGSVVAYCLGITKIDPIKYDLLFERFLNPDRISLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R  V+ +V++KYGH++VA IIT+G++  K +++DVGR  ++P   V+ LCKL
Sbjct: 473  DTDFDDDGRGRVLEWVEDKYGHDKVAHIITYGTMATKNSIKDVGRVEKVPLKIVNDLCKL 532

Query: 479  IPNDPAHPVSL---QAIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP+     + +    AI      REA   AD  +   +  ++ LEG  R    HA G +I
Sbjct: 533  IPDKLPDGMKMSVANAIKAIPELREAEASADEGLRNTMMYAKMLEGTVRGTGIHACGTII 592

Query: 535  GDRPLSQLVPMYR-----DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
                +S  VP+       D    L  TQ++   IE+ GLIK DFLGLKTL++L+++++ +
Sbjct: 593  CRDAISDWVPVSTAEDKADPGHKLLCTQYDGHVIEETGLIKMDFLGLKTLSILKEAVENV 652

Query: 590  -AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
                G  +DL  IP DD +TY L     T+G FQ ES+GM++ L  +QP   ED+IA+ +
Sbjct: 653  RISTGETIDLEKIPIDDPKTYQLYCEGRTIGTFQFESAGMQKYLRELQPSVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK    K+    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPDFIARKRDPSKVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            ++D LR+AMGKK+  +MDK +  F  G  KNG  K +   I+E   KFA Y FNKSHA  
Sbjct: 773  QSDTLRKAMGKKLIAQMDKLETLFYEGGMKNGHPKEVLNKIWEDWKKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ +++QTA+ K HYP E++AA M+  + N+  I KF  + R   I+ + P VN   + F
Sbjct: 833  YSWVAFQTAYFKAHYPAEYMAAVMSRNLANIADITKFMDECRAMGIKTLGPDVNESRLKF 892

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V  +  I + LAAIKG+G   A+ I+ E   + P+ S+ D   RV+   +N++ +ESL 
Sbjct: 893  SVNKHGEIRFGLAAIKGMGDAAAQAIIQEREKNGPYTSVFDMVQRVNLSSVNKKAIESLA 952

Query: 887  FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
             +G  D FG +R     +       +DN+ +Y Q  +  +     ++F            
Sbjct: 953  LSGGFDSFGIARESYFGTDSKGSTFIDNLTRYGQLFQMEQQQMRNSLFGDSNAVEVATPP 1012

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM---GIKGYEESVATIRGNNIR 996
            + +    +S  R   E+ ++G Y S HPLD YK +L+ M   G    E+ +A ++   + 
Sbjct: 1013 VPQAERWSSIERLNKERDLVGIYLSAHPLDDYKIVLQAMCNTGCNELEDKMALVQKAEVT 1072

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            LA MV + +   T+ G   G+VT  + +   E  FF
Sbjct: 1073 LAGMVTNTRSAVTKMGKPCGFVTIEDYSGSGELAFF 1108


>gi|271964395|ref|YP_003338591.1| DNA polymerase III subunit alpha [Streptosporangium roseum DSM 43021]
 gi|270507570|gb|ACZ85848.1| DNA polymerase III alpha subunit [Streptosporangium roseum DSM 43021]
          Length = 1173

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 394/1065 (36%), Positives = 582/1065 (54%), Gaps = 85/1065 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL VH+ YS+L+GA  L  +  ++     PAIAITD  N+  A +F ++A  AGI
Sbjct: 2    SDSFVHLHVHTEYSMLDGAARLKQMFKQVGDLGMPAIAITDHGNMHGAYDFYKQATGAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS--------------IVLLVSTAEGYQRLI 113
            +P+IG +  +         +Q K      P               + +    A+G   L+
Sbjct: 62   KPVIGIEAYVAPASR----HQKKPVLWGEPHQKRDDVSAGGYYTHMTIWAKNAKGLTNLM 117

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +L SR Y     ++  R+    L E  +EGL+  TG  SG +           A      
Sbjct: 118  KLSSRAYTEGFVRKWARMDAETLAE-HSEGLMATTGCPSGEVQTRLRLGQYDEALAAAAK 176

Query: 174  FKKLFG-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            F++LFG D  Y+ +  H G D  R     + +++    +P + TN+S +  E D  +HD 
Sbjct: 177  FQELFGRDNYYLEIMDH-GLDIERRVRDGLTRISRDLNIPPLVTNDSHYTYESDATSHDA 235

Query: 231  LMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSI-FSDL-PEALENTVEIARRCSFI-LQ 286
            L+ +     ++  DR R     +Y+K   EM ++  SDL  E   NT+ +A +     + 
Sbjct: 236  LLCIQTGKQLADPDRFRFDGSGYYIKTADEMRAVDSSDLWAEGCRNTLLVAEKVDPTGMF 295

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                ++P F   E D     EE+  R +   G+E R  +G        +++R +++FE+N
Sbjct: 296  GFKNLMPTFPIPEGD----SEESWFRKEIWKGMERRFPEGV------DEEHRAQIEFEMN 345

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI +M F  YFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DPL   L+FER
Sbjct: 346  VILQMGFPSYFLVVADFIMWAKNNGIRVGPGRGSAAGSLAAYALGITDLDPLPHGLIFER 405

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNPDR+SMPD DIDF + RR +VIRYV  KYG ++VA I TFG+++AKAA++D  R L 
Sbjct: 406  FLNPDRVSMPDVDIDFDERRRGDVIRYVTEKYGADKVAMIATFGTIKAKAAIKDAARVLG 465

Query: 467  MPYSQVDRLCKLIPNDPA---HPVSLQAI--ADDSRFREA----RLADPSVD--RLLEIS 515
             PY+  D++ K  P  PA     + L  I   D  R+ EA    +L D  VD    +++ 
Sbjct: 466  HPYALGDKVSKAFP--PAVMGKDIPLSGIFDKDHPRYNEAGELRKLYDEDVDVKSAMDLG 523

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + LEGL R    HAAG+++    L+  +P+ R     + +TQF+    E  GL+K DFLG
Sbjct: 524  RGLEGLIRQTGVHAAGVIMSSEVLTDYIPIMRRDSDGVIITQFDYPTCETLGLLKMDFLG 583

Query: 576  LKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L+ LT++   L  + A  G K+DL  +P DD +TY LL    TLG+FQL+  GMR  L  
Sbjct: 584  LRNLTIIDDCLKMIEANTGTKIDLLKLPLDDRKTYELLGRGDTLGVFQLDGGGMRSLLRL 643

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGV 688
            M+PD  EDI A+ +LYRPGP+  D+   Y  RKNG + I  IHP  +  L+E    T G+
Sbjct: 644  MKPDNFEDISAVGALYRPGPMGADSHTNYALRKNGLQDITPIHPEFEESLQEILGTTHGL 703

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQVM IAQ ++G+SL +AD+LRRAMGKK K E+DKQ E F  G   NG S      
Sbjct: 704  IVYQEQVMAIAQKVAGFSLGKADLLRRAMGKKKKSELDKQFESFEQGMKDNGYSAAAIKT 763

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++++L  F+DY FNK+H+AAY ++SY TA++K +YP E++A  +T   D+ +K   +  +
Sbjct: 764  LWDILLPFSDYAFNKAHSAAYGLVSYWTAYLKANYPSEYMAGLLTSVKDDKDKSALYLNE 823

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLED 867
             R+  I+++PP VN    DF      + + L+AI+ VG      I+ A  +K  F   +D
Sbjct: 824  CRRMGIKVLPPDVNDSDFDFTPRGTDVRFGLSAIRNVGGNVVDGIIAARREKTRFADFKD 883

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKH 923
            F  +V     N+RV+ESL+ AGA D F + R  L+    Q++D+I      ++KN     
Sbjct: 884  FLRKVPMVVCNKRVIESLIKAGAFDSFAHERKGLVMVHEQAVDSIIG----IKKNEAQGQ 939

Query: 924  ENIFAHEKG----TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            +++F   +G    TF  +I   ++  + + ++FE E  +LG Y S HPL   + IL    
Sbjct: 940  DSLFGAVEGAEDQTFDVQIPPGEWD-KTTLLQFERE--MLGLYVSDHPLFGVEHIL---- 992

Query: 980  IKGYEESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWV 1018
              G + S+A ++  N      + +  ++   Q+K T+KG    WV
Sbjct: 993  ASGADCSIAALQDENRSDGQVVTVGGILSGVQRKVTKKGDT--WV 1035


>gi|269837330|ref|YP_003319558.1| DNA polymerase III, alpha subunit [Sphaerobacter thermophilus DSM
            20745]
 gi|269786593|gb|ACZ38736.1| DNA polymerase III, alpha subunit [Sphaerobacter thermophilus DSM
            20745]
          Length = 1167

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 368/1060 (34%), Positives = 571/1060 (53%), Gaps = 76/1060 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ +SLL+G   + + + +        IAITD   ++  +++ + A A  + PI
Sbjct: 6    FAHLHLHTEFSLLDGMGRIKDYMARAREFGMEHIAITDHGVMYGVIDWYKAARAHDLHPI 65

Query: 71   IGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +G +  +    ++D  K +            ++LL     GY+ L+ L SR  L +    
Sbjct: 66   LGIEAYLAPGSIEDREKQSYH----------LLLLAENERGYRNLLRLASRASL-EGFYY 114

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              R+ L  L  +  +G+I  +    GP+   F     + A +     K++FG D  Y+ +
Sbjct: 115  KPRVDLDMLNSL-RDGIICTSACLGGPVANNFLQGRDEEAVRLAGILKEMFGPDHFYIEI 173

Query: 187  QRHRGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            Q H G +  R++  Q+++LA   +LPLVATN+  ++ + D    ++L+ +  +T +    
Sbjct: 174  QDH-GIEGQRQTNPQLIELARKLDLPLVATNDVHYVDKSDAPLQELLVCIQTNTTLHDPK 232

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ---VHAP-------ILP 293
            R R+  D  Y K+  EM  +F ++PEALENT+ IA RC+  L+   +H P       + P
Sbjct: 233  RLRMESDQLYFKSPEEMWRLFGEVPEALENTIRIAERCNVDLEFGRLHLPDPGIPEGMTP 292

Query: 294  R-FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
              ++ + C D  +    E+                       ++ R+RL++EL+VI    
Sbjct: 293  HEYLCQLCWDGVRRRYPEV----------------------TEEVRRRLEYELDVIQETG 330

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            FS Y LIV DF ++A++  I  G  RGS A S+  Y L ITDIDPL   L+FERFLN +R
Sbjct: 331  FSSYMLIVRDFAEFARQRRISFGV-RGSAAASIVLYTLGITDIDPLANRLVFERFLNRER 389

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
              MPD D+DF  +RR EVI YV +KYGH+RVAQIITFG++ AKAA+RD GRA+   Y+ V
Sbjct: 390  REMPDIDMDFADNRRAEVIDYVASKYGHDRVAQIITFGTMGAKAAIRDTGRAMGWAYNDV 449

Query: 473  DRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            DR+ +LIP+     ++L +A+ +    R+    DP+   L++ +++LEG+ RHA THAAG
Sbjct: 450  DRIARLIPS--TLNITLDKALQESPELRQLYETDPACRELIDNAKRLEGISRHAGTHAAG 507

Query: 532  IVIGDRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            +VI   PL + +P+ R  R++   LP TQF M+ + + GL+K DFLGL  LT+L ++++ 
Sbjct: 508  VVIAADPLVEHLPLQRPARAEEGALPTTQFPMETVAEIGLLKMDFLGLANLTILGEAVEL 567

Query: 589  LAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + Q  GV++D   IP  D +TY +L+   T G+FQLES+GMR+ +  ++P  I ++ A+V
Sbjct: 568  IRQTTGVEIDPKKIPDGDEKTYAMLSQGETFGVFQLESAGMRRYIRELRPSSIAELAAMV 627

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +LYRPGP+ +I  Y   K+G E I   HP +  +L ET GVI+YQ+QV+ IA+  +GY+L
Sbjct: 628  ALYRPGPMQHIPTYCRAKHGLEPIRYPHPDLAEILDETYGVIVYQDQVLLIARKFAGYTL 687

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             EAD++R+AMGKKI E M  ++ERF+ GA + G S   A N+F L+  FA Y FNK+HA 
Sbjct: 688  GEADIMRKAMGKKIPEVMKAERERFLRGAQEKGYSAEDAQNVFNLIEPFAGYAFNKAHAV 747

Query: 768  AYAVISYQTAWMKTHYPVEFLAASM----TLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
             YA ISYQT+++K +YP E++ A +    +      +++     + ++  I ++PP +N 
Sbjct: 748  CYATISYQTSYLKANYPAEYMTAVLRGAPSHPSGATQRVAAAVAECQKLGIPVLPPDINK 807

Query: 824  PCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSK 875
              VDF++     G   I + LA +K VG      I+ A    P   F+S E FC  VD  
Sbjct: 808  SGVDFEIEILEDGTKAIRFGLAIVKNVGEAAVESIVAARKSLPGERFESFEQFCDTVDWT 867

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
             +NRRV ESL+  GALD  G  R  LL  L+     AQ  ++       ++F+       
Sbjct: 868  VVNRRVAESLIKCGALDSLG-DRATLLAVLEQAISAAQSRQRAAKRGQIDLFSAAPVAAP 926

Query: 936  DKITLEKFSVEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
                     V     +     E+ +LG Y S HPL+   P++R  G     E      G 
Sbjct: 927  ALALAMPDDVPEIPRATLLAWEKELLGLYLSSHPLNDLVPLIRDGGYVRLAEIDEETVGQ 986

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             I    M+   ++  T+    +      +     E   FP
Sbjct: 987  QIEAIVMITGMRKLTTKTNRVMAICQLEDQTGAIEMVVFP 1026


>gi|28572411|ref|NP_789191.1| DNA polymerase III subunit alpha [Tropheryma whipplei TW08/27]
 gi|28410542|emb|CAD66928.1| DNA polymerase III alpha subunit [Tropheryma whipplei TW08/27]
          Length = 1164

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 389/1037 (37%), Positives = 563/1037 (54%), Gaps = 58/1037 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA    +++ K A D+ PAIAITD  N F A +F + A    I P
Sbjct: 6    SFVHLHVHTDYSMLDGAARTEDLMRKAAEDKMPAIAITDHGNTFGAFDFWKTAKTYDINP 65

Query: 70   IIGCQLDIDMQDNLK------MTNQGK---TPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            IIG +  +    N K        + G    +       + LL    EG   L +L S + 
Sbjct: 66   IIGMEAYLTPGTNRKEKVRKFFASGGPDDVSAGGAYTHLTLLSQNNEGMHNLFKL-SSLA 124

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179
             ++      RI +  L +  + GLI  TG  SG I           A +     + +FG 
Sbjct: 125  SIEGYYFKPRIDIELLNQY-SNGLIATTGCPSGEIQTRLRLGQYSEARQAAAQMRDIFGP 183

Query: 180  DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +  Y  +  H    ++     +++LA    LPL+ATN+  +++ ED  +H  L+ V   +
Sbjct: 184  ENYYCEVMDHNLEIEKAVMPDLLRLAGDLGLPLLATNDLHYVNSEDSASHAALLCVQSGS 243

Query: 239  VVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             ++  +R +   D  YLK+ SEM  +F DLPEA +NT+ +A RC          +PRF  
Sbjct: 244  TINDPNRFKFDSDEFYLKSSSEMRILFEDLPEACDNTLLVAERCHINFDTQRSFMPRFSV 303

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E +     E +   ++   G+  R   G       ++   ++ ++E+ V+    ++GYF
Sbjct: 304  PEGE----TENSWFASEVKRGIASRYPNGP------SRRVIEQAEYEIRVVQEAGYAGYF 353

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK N I VGPGRGSGA S+ AYA+ ITD+DPL   L+FERFLNP R+SMPD
Sbjct: 354  LIVADFINWAKLNGIRVGPGRGSGAASMAAYAMRITDLDPLEHGLIFERFLNPARISMPD 413

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDF + RR EVI YV  KYG + VAQI+TF +++AK AL+D  R L  PYS  +RL K
Sbjct: 414  FDIDFDERRRGEVIDYVTKKYGSDHVAQIVTFATIKAKQALKDSARVLSYPYSFGERLTK 473

Query: 478  LIPNDPA---HPVSLQAIADD--SRFREARL------ADPSVDRLLEISQKLEGLYRHAS 526
             +P  PA     + L+AI D   SR REA        +D  + ++   ++ LE L R  +
Sbjct: 474  AMP--PAVMGREIPLRAIFDTTHSRHREASEVRQMIESDYEMQQIFNTAKGLENLKRQWA 531

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HAAG+++ D P+  ++P+ +       VTQF+    E  GL+K DFLGL+ LT++  +L
Sbjct: 532  VHAAGVIMSDAPIIDIIPIMKRESDGHIVTQFDYASCESLGLVKMDFLGLRNLTIIDDAL 591

Query: 587  DFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
              + Q +  KVDL  +P DD E Y LL    TLG+FQL+S  +RQ LE MQPD  +DI A
Sbjct: 592  ANIRQNKNTKVDLENLPLDDPEVYKLLRRADTLGVFQLDSGPIRQLLELMQPDSFDDISA 651

Query: 646  LVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVMQIA 699
             ++LYRPGP+   +   Y  RKN K++I  IHP +      +L  T G+I+YQEQV+ IA
Sbjct: 652  AIALYRPGPMGARSHTNYALRKNRKQEIDHIHPELTKDLSVLLSSTYGLIVYQEQVIGIA 711

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q L+G++L EADVLR AMGKK K+E+D+Q  +F +G  K G S      ++ +L  F+DY
Sbjct: 712  QKLAGFTLEEADVLRWAMGKKKKDELDRQYNKFANGMRKAGYSDGATEALWNVLLPFSDY 771

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNK+HA AY +ISY TA++K HYP E++AA +T    + +K+  + Q+ R   I+++ P
Sbjct: 772  AFNKAHATAYGLISYWTAYLKAHYPTEYMAALLTSVETSRDKLGLYLQECRHMCIKVLLP 831

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
             +N     F      I + L AIK VG      I+E   D PF SL DF  R+    LNR
Sbjct: 832  DINVSRSGFTPSGENILFGLGAIKNVGANLIDDILEVREDGPFVSLIDFVQRMPHSVLNR 891

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R + SL+ AGA D    +R    +SL +I +    +E  + N   +  +   G   +   
Sbjct: 892  RSVMSLIQAGAFDSIHPNR----RSLMDIHRSV--LENCQANARRSDVSLLDGLLDE--- 942

Query: 940  LEKFSVE-----NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             E FS       N+  R + E+ +LG Y S HPLD  +  L K       E ++    + 
Sbjct: 943  YEGFSPPDIPDWNNRERLKYEREMLGMYVSSHPLDGLEDSLLKFRDCSIAECISRKPQDV 1002

Query: 995  IRLAAMVVSKQQKKTRK 1011
            IR+A ++ S + K  R+
Sbjct: 1003 IRVAGLITSVEHKVARR 1019


>gi|291525519|emb|CBK91106.1| DNA polymerase III catalytic subunit, DnaE type [Eubacterium rectale
            DSM 17629]
          Length = 1166

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 375/1061 (35%), Positives = 579/1061 (54%), Gaps = 59/1061 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL  H+ YSLL+G+  +   + ++      + AITD  N++  +EF + A A  I P
Sbjct: 2    SFCHLHTHTEYSLLDGSNKIKEYVKRVKELGMNSAAITDHGNMYGVVEFYKTAKANDINP 61

Query: 70   IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            +IGC++ +       + T+ G   +     ++LL     GY  L+++VS +   +     
Sbjct: 62   VIGCEVYVAPNSRFDRETSHGDDRYY---HLILLAENNTGYANLMKIVS-IGFTEGYYYR 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDR----AFFFNSSQVAEKRLLTFKKLFG-DRLY 183
             R+    L+    EGLI L+   +G I R     F+  + ++A K    ++  FG D  +
Sbjct: 118  PRVDFETLERY-HEGLICLSACLAGEIPRYIVRGFYDEAKEIARK----YQDCFGKDNFF 172

Query: 184  VNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQ H G D  +    Q+++++   E+ LV TN+  +  E D EAHDVL+ +     VS
Sbjct: 173  LELQDH-GIDDQKLVNQQLLRMSKELEIGLVCTNDVHYTYESDAEAHDVLLCIQTGKKVS 231

Query: 242  QKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             +DR R     + +K+  +M ++F    EA+ENT +IA RC+  L+     +P++   E 
Sbjct: 232  DEDRMRYDGGQFFVKSEEQMRALFPYATEAIENTQKIADRCNVTLEFGNYKIPKYEVPEG 291

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIA----KGYHAQDYRQRLDFELNVIARMKFSGY 356
             D  +    EL  K     E  +  G  +    K  HA      +D+EL +I  M F  Y
Sbjct: 292  YDSAEAFLTELCEKGFR--EKYIGCGEYSDEELKKIHAD-----MDYELGIIKTMGFIEY 344

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
             LIV D+I W + ++  VGPGRGS AGS   Y   ITDIDP++++LLFERFLNP+R+SMP
Sbjct: 345  ILIVWDYINWCRTHDCWVGPGRGSAAGSRVCYCTGITDIDPVKYNLLFERFLNPERVSMP 404

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF    R   I YVQ KYGH+ V QI+TFG++ A+  ++ VG+AL  PY++ DRL 
Sbjct: 405  DIDVDFEYAERYRAIEYVQQKYGHDSVTQIVTFGTMAARGVIKSVGKALDFPYAETDRLA 464

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            K++P +    +  +A+  +  F+    +D  V  +++++++LEGL  H S HAAG+VI  
Sbjct: 465  KMVPQELNITID-KALQMNPEFKGIYDSDARVHEMIDMAKRLEGLPNHTSVHAAGVVIYP 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVK 595
               S  VP+ R      P  ++NM  +E+ GL+K DFLGL+TLT+L+ S+ +  A RG+ 
Sbjct: 524  GVASDYVPLGR-ANDGSPTAEYNMVQLEELGLLKMDFLGLRTLTVLKDSVKNIKASRGID 582

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD+  I F+D  T   + T  T G+FQLES+GM+  ++ + P   EDI+A +SLYRPGP+
Sbjct: 583  VDIDHIDFNDKGTLDFIGTGKTEGVFQLESAGMQSFMKELSPQSFEDIVAGISLYRPGPM 642

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  Y   KN  ++I  + P ++ +L+ T G I+YQEQVMQI Q L+GY++ +AD +RR
Sbjct: 643  DFIPNYIKGKNNPKEISYVTPELESILEPTYGCIVYQEQVMQIVQKLAGYTMGQADNIRR 702

Query: 716  AMGKKIKEEMDKQ--------KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            AM KK +  +D +        KER I G   NGI +  A +I++ +  FA Y FNKSHAA
Sbjct: 703  AMSKKKQYVIDAERQSFVYGDKERGIKGCVANGIDEKAANSIYDSMVDFAKYAFNKSHAA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA IS QTAW+K +YPVEF+AA MT  +DN  K  ++    R   I+++PP +N    +
Sbjct: 763  AYAKISVQTAWLKNYYPVEFMAALMTSVIDNSAKAAQYLYSCRDMGIKVLPPDINCGQGE 822

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKL-NRRVLESL 885
            F    + + Y + AIK +G      I+E   +   + +L DF  R   K+L N+R +E+L
Sbjct: 823  FTAEGDHVRYGMYAIKSLGRPVIDQIIEERESGGRYRTLSDFIERTCQKELINKRAIENL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKI-TL 940
            + AGA D    +R Q+     +I    Q  +K+      ++F      ++ +F  K   +
Sbjct: 883  IKAGACDSLDGTRKQMAMVYASIVDRVQHDKKSTMAGQMSLFDLVSDEDRQSFELKYPNV 942

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIRGNN 994
             ++  E +      E+ VLG Y SGHPL+ Y   L+K      +     EES A    +N
Sbjct: 943  GEYDAEEA---LAYEKEVLGIYLSGHPLEKYAAALKKNITANAIDFVLEEESGAVKIEDN 999

Query: 995  --IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + +  M+ +K  K T+    + ++T  +     E   FP
Sbjct: 1000 AHVVIGGMIATKTIKFTKYNQAMAFITIEDLTGTVEVIIFP 1040


>gi|167745888|ref|ZP_02418015.1| hypothetical protein ANACAC_00582 [Anaerostipes caccae DSM 14662]
 gi|167654403|gb|EDR98532.1| hypothetical protein ANACAC_00582 [Anaerostipes caccae DSM 14662]
          Length = 1153

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 387/1055 (36%), Positives = 594/1055 (56%), Gaps = 56/1055 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +  ++         +IAITD   ++  ++F + A A GI+P
Sbjct: 2    SFTHLHVHTEYSLLDGSSKIKELVHHTKELGMDSIAITDHGVMYGVIDFYKAAKAEGIKP 61

Query: 70   IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I+GC++ +       K   QG + +     +VLL     GY  L+++VSR +  +     
Sbjct: 62   ILGCEIYVTPGSRFEKEARQGSSNYF---HLVLLAENDRGYHNLMKIVSRGFT-EGFYYK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187
             R+    L+   +EGLI L+    G I         + A++  L F++++G    ++ LQ
Sbjct: 118  PRVDYEVLERY-SEGLIALSACLGGEIPTYIREGDYEKAKETALRFERIYGKGNFFLELQ 176

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++    S +++++    + LVATN+  +   ED E HD+L+ +     V+ +DR 
Sbjct: 177  DHGISEQTTVNSALIKMSKETGIELVATNDIHYTFAEDVEPHDILLCIQTGKKVADEDRM 236

Query: 247  RVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R     +YLK+  EM  +F    +A+ENT +IA RC+  +      +P+F   E D    
Sbjct: 237  RYEGGQYYLKSPEEMERLFPYARQAVENTGKIAERCNVEIIFGEQKVPKFDVPEGDT--- 293

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               + LR         +L +  I + Y    ++ R+RL+FEL  I  M +  YFLIV DF
Sbjct: 294  -STSYLR---------KLCEEGICRRYDDVTEELRERLEFELKTIENMGYVDYFLIVWDF 343

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I +AK++ I VGPGRGS AGS+ +Y L ITDI+P+++ LLFERFLNP+R+SMPD DIDFC
Sbjct: 344  IHYAKEHGIAVGPGRGSAAGSIVSYCLEITDIEPIKYQLLFERFLNPERVSMPDIDIDFC 403

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR EVI YV  KYG ++V QIITFG++ A+A +RDVGR L +PY++VD + K++PN+ 
Sbjct: 404  YERRQEVIDYVVEKYGKDKVVQIITFGTMAARAVIRDVGRVLDIPYAKVDGIAKMVPNEL 463

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +   A+      ++A   D     L+++S++LEGL RHAS HAAG+VIG   + + V
Sbjct: 464  NITIE-GALKKSPDLKKAYAEDEETKYLIDMSRRLEGLPRHASMHAAGVVIGKDSIDEFV 522

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602
            P+ +    D   TQF M  IE+ GL+K DFLGL+TLT++Q ++  + +R G   D++ I 
Sbjct: 523  PLAKGA-DDAVTTQFTMTTIEELGLLKMDFLGLRTLTVIQDAVHLIEKREGKPFDINQID 581

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D + Y +++   T G+FQLES GM+  ++ ++P+ +E+IIA +SLYRPGP+D I  Y 
Sbjct: 582  TEDPKVYEMISQGRTEGVFQLESGGMKAFMKELKPESLEEIIAGISLYRPGPMDFIPRYV 641

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K  K+ I    P ++ +LK T G I+YQEQVMQI   L+GY+L  +D++RRAM KK  
Sbjct: 642  KGKVDKDSIRYDCPQLEKILKPTYGCIVYQEQVMQIVMELAGYTLGRSDLVRRAMSKKKG 701

Query: 723  EEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            + M K+++ F        I G  KNGI +  A +I++ +  FA Y FNKSHAAAYAV++Y
Sbjct: 702  DVMVKERKNFVYGNEKEDIPGCIKNGIDEKTANHIWDEMLDFAKYAFNKSHAAAYAVVAY 761

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA+++ HY  EF+AA +T  + N  K+ ++    R+  I+I+PP +N     F V D  
Sbjct: 762  QTAFLRCHYQKEFMAALLTSVLGNTNKVSEYIYACRKMGIKILPPDINKGEGAFSVDDGC 821

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L+AIK +G      I+ E S    + SL D   R+ SK++N+R +ESL+ +GALD 
Sbjct: 822  IRYGLSAIKSLGKPVIEEILRERSEGGSYKSLRDLIERLSSKEMNKRTVESLIKSGALDE 881

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-RF 952
             GY+R Q +    +I +  Q   K+  +   +I       F  +   + F +E   V  F
Sbjct: 882  LGYTRKQQMFVYASILESIQKERKHEISGQMSIL-----DFMSEDQQKNFEIEYPDVGEF 936

Query: 953  ENEQR------VLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------TIRGNNIRLAA 999
            + EQR      VLG Y SGHPL+    IL ++      +  A        +R     +  
Sbjct: 937  DKEQRLAMEKEVLGIYVSGHPLEDDVEILERLTTASTADFTAEEDTGQPVLRDKQTCIIG 996

Query: 1000 MVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++S  + K TR    + ++T  +     E   FP
Sbjct: 997  GIISDMKVKLTRTNQNMAFLTLEDLMGTVEVIVFP 1031


>gi|291528373|emb|CBK93959.1| DNA polymerase III catalytic subunit, DnaE type [Eubacterium rectale
            M104/1]
          Length = 1166

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 372/1059 (35%), Positives = 581/1059 (54%), Gaps = 55/1059 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL  H+ YSLL+G+  +   + ++      + AITD  N++  +EF + A A  I P
Sbjct: 2    SFCHLHTHTEYSLLDGSNKIKEYVKRVKELGMNSAAITDHGNMYGVVEFYKTAKANDINP 61

Query: 70   IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            +IGC++ +       + T+ G   +     ++LL     GY  L+++VS +   +     
Sbjct: 62   VIGCEVYVAPNSRFDRETSHGDDRYY---HLILLAENNTGYANLMKIVS-IGFTEGYYYR 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDR----AFFFNSSQVAEKRLLTFKKLFG-DRLY 183
             R+    L+    +GLI L+   +G I R     F+  + ++A K    ++  FG D  +
Sbjct: 118  PRVDFETLERY-HDGLICLSACLAGEIPRYIVRGFYDEAKEIARK----YQDCFGKDNFF 172

Query: 184  VNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQ H G D  +    Q+++++   E+ LV TN+  +  E D EAHDVL+ +     VS
Sbjct: 173  LELQDH-GIDDQKLVNQQLLRMSKELEIGLVCTNDVHYTYESDAEAHDVLLCIQTGKKVS 231

Query: 242  QKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             +DR R     + +K+  +M ++F    EA+ENT +IA RC+  L+     +P++   E 
Sbjct: 232  DEDRMRYDGGQFFVKSEEQMRALFPYATEAIENTQKIADRCNVTLEFGNYKIPKYEVPEG 291

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAI--AKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
             D  +    EL  K      +   + ++   K  HA      +D+EL +I  M F  Y L
Sbjct: 292  YDSAEAFLTELCEKGFREKYIGCGEYSVDELKKIHAD-----MDYELGIIKTMGFIEYIL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV D+I W + ++  VGPGRGS AGS   Y   ITDIDP++++LLFERFLNP+R+SMPD 
Sbjct: 347  IVWDYINWCRTHDCWVGPGRGSAAGSRVCYCTGITDIDPVKYNLLFERFLNPERVSMPDI 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF    R   I YVQ KYGH+ V QI+TFG++ A+  ++ VG+AL  PY++ DRL K+
Sbjct: 407  DVDFEYAERYRAIEYVQQKYGHDSVTQIVTFGTMAARGVIKSVGKALDFPYAETDRLAKM 466

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +P +    +  +A+  +  F+    +D  V  +++++++LEGL  H S HAAG+VI    
Sbjct: 467  VPQELNITID-KALQMNPEFKGIYDSDARVHEMIDMAKRLEGLPNHTSVHAAGVVIYPGV 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVD 597
             S  VP+ R      P  ++NM  +E+ GL+K DFLGL+TLT+L+ S+ +  A RG+ VD
Sbjct: 526  ASDYVPLGR-ANDGSPTAEYNMVQLEELGLLKMDFLGLRTLTVLKDSVKNIKASRGIDVD 584

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  I F+D  T   + T  T G+FQLES+GM+  ++ + P   EDI+A +SLYRPGP+D 
Sbjct: 585  IDHIDFNDKGTLDFIGTGKTEGVFQLESAGMQSFMKELSPQSFEDIVAGISLYRPGPMDF 644

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y   KN  ++I  + P ++ +L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM
Sbjct: 645  IPNYIKGKNNPKEISYVTPELESILEPTYGCIVYQEQVMQIVQKLAGYTMGQADNIRRAM 704

Query: 718  GKKIKEEMDKQ--------KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             KK +  +D +        KER I G   NGI +  A +I++ +  FA Y FNKSHAAAY
Sbjct: 705  SKKKQYVIDAERQSFVYGDKERGIKGCVANGIDEKAANSIYDSMVDFAKYAFNKSHAAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A IS QTAW+K +YPVEF+AA MT  +DN  K  ++    R   I+++PP +N    +F 
Sbjct: 765  AKISVQTAWLKNYYPVEFMAALMTSVIDNSAKAAQYLYSCRDMGIKVLPPDINCGQGEFT 824

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKL-NRRVLESLVF 887
               + + Y + AIK +G      I+E   +   + +L DF  R   K+L N+R +E+L+ 
Sbjct: 825  AEGDHVRYGMYAIKSLGRPVIDQIIEERESGGRYRTLSDFIERTCQKELINKRAIENLIK 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKI-TLEK 942
            AGA D    +R Q+     +I    Q  +K+      ++F      ++ +F  K   + +
Sbjct: 885  AGACDSLDGTRKQMAMVYASIVDRVQHDKKSTMAGQMSLFDLVSDEDRQSFELKYPNVGE 944

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVAT-IRGN-N 994
            +  E +      E+ VLG Y SGHPL+ Y   L+K      +     EES +  I+ N +
Sbjct: 945  YDAEEA---LAYEKEVLGIYLSGHPLEKYAAALKKNITANAIDFVLEEESGSVKIKDNAH 1001

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +  M+ +K  K T+    + ++T  +     E   FP
Sbjct: 1002 VVIGGMIATKTIKFTKYNQAMAFITIEDLTGTVEVIIFP 1040


>gi|332169580|gb|AEE18835.1| DNA polymerase III, alpha subunit [Krokinobacter diaphorus 4H-3-7-5]
          Length = 1463

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 371/1078 (34%), Positives = 571/1078 (52%), Gaps = 87/1078 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            F HL  HS +S+L+   S+ +I+   A  + PA+A+TD  N+  A  F++          
Sbjct: 262  FAHLHNHSQFSILQSTASVQDIVKAAALHKMPAVAMTDMGNMMGAFHFTKAVKSHNAFAK 321

Query: 61   ----KACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                K   AG       ++ IIGC+       N+ + ++ K+       IV+L     GY
Sbjct: 322  AENAKLTEAGEAEEHVPLKAIIGCEF------NVCVDHKNKSQKDNGYQIVILAKNKNGY 375

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            Q L ++ S  Y    G   V      + E   E LI+LTG   G +         + AE+
Sbjct: 376  QNLCKMASIAYT--DGFYYVPRIDKQVIEQYKEDLIVLTGNLYGEVPSKILNVGEKQAEE 433

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAH 228
             L+ +K+ FGD LYV + RH   D  R   V + L+  H++ L+A+NN+ ++ + D +AH
Sbjct: 434  ALIWWKEQFGDDLYVEIMRHGQEDEDRVMPVLITLSRKHDVKLIASNNTFYIDKSDADAH 493

Query: 229  DVLMAVAHS-TVVSQKDRPR------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            DVL+ V     V + K R R         ++Y K+  EM ++F+D+PEA+ N  E+  + 
Sbjct: 494  DVLLCVKDGEKVATPKGRGRGYRFGLPNDEYYFKSADEMKTLFADVPEAILNVQEVVNKI 553

Query: 282  SFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
                     +LP F         E   D  ++ E   L++    G + R  +        
Sbjct: 554  ESYELARDVLLPAFDIPEEFVSPEDAIDGGKQGENAFLKHLVYEGAKKRYGEEL------ 607

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
            +++  +RLDFEL+VI +  + GYFLIV DFI+ A+  ++ VGPGRGS AGSV AY L IT
Sbjct: 608  SEEVIERLDFELDVIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVAAYCLWIT 667

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            +IDPL++ LLFERFLNPDR+SMPD DIDF  + R  V++YV +KYG  +VAQIIT+G++ 
Sbjct: 668  NIDPLKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMQYVIDKYGANQVAQIITYGTMA 727

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLAD--PSVD 509
            AK+++RD  RAL +     DR+ KLIP        L+ I    D+  R A  +D  P V 
Sbjct: 728  AKSSIRDTSRALDLSLGDADRIAKLIPT----MSKLRKIFGKTDAELRSAFRSDDLPKVQ 783

Query: 510  RLLEISQ-------------KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
             L+ + Q             +LEG  R+   HA G++I    ++  VP+     SDL VT
Sbjct: 784  ELITLEQADNLEGQMLRQARQLEGSVRNTGIHACGVIITPSDITNFVPVALAKDSDLYVT 843

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTK 615
            QF+   +E+AGL+K DFLGLKTLTL++ ++  +  R  V +D    P DD +TY L    
Sbjct: 844  QFDNSVVEEAGLLKMDFLGLKTLTLIKDTVKLVKYRHDVDLDPESFPLDDEKTYELFQRG 903

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
             T+GIFQ ES GM++ ++ ++P   ED+IA+ +LYRPGP++ I  +  RK+G+E+I    
Sbjct: 904  DTVGIFQYESPGMQKHMQSLKPTVFEDLIAMNALYRPGPMEYIPSFVRRKHGEEEIEYDL 963

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            P ++  LKET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK    +DK K +FI  
Sbjct: 964  PAMEEYLKETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQ 1023

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            AS  G        I++    FA Y FNKSH+  YA I+YQTA++K HYP E+LAA ++  
Sbjct: 1024 ASAKGHDPEKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYLKAHYPAEYLAAVLSNN 1083

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIM 854
            M++++++  F ++A++  ++++ P VN     F V DN  + + + A+KGVGT     I+
Sbjct: 1084 MNDIKQVTFFMEEAKRMGLEVLGPDVNESFRKFTVNDNGAVRFGMGAVKGVGTGAVATIV 1143

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS--RMQLLQS-------L 905
            E   D  + S+ DF  RVD +  N++  ESL  AG  D    +  R Q           L
Sbjct: 1144 ENRKDGNYKSVFDFARRVDLRAANKKAFESLALAGGFDELDRNTHRAQFFNHDGDGITFL 1203

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +   KY    ++N  +   ++F         +  +       +  + + E+ V+G Y SG
Sbjct: 1204 EKAVKYGARYQENENSSQVSLFGESSEVQIPEPEVPPCEEWGTMEKLKREKEVVGVYISG 1263

Query: 966  HPLDVYKPILRKM--GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            HPLD +K  +         +   + +     +    ++   Q + ++ G   GW  F+
Sbjct: 1264 HPLDDFKTEMETFCNATVAHFSQMESFINRELTFGGVISDVQHRVSKNGK--GWAAFT 1319


>gi|239917850|ref|YP_002957408.1| DNA-directed DNA polymerase III PolC [Micrococcus luteus NCTC 2665]
 gi|281413657|ref|ZP_06245399.1| DNA polymerase III subunit alpha [Micrococcus luteus NCTC 2665]
 gi|239839057|gb|ACS30854.1| DNA-directed DNA polymerase III PolC [Micrococcus luteus NCTC 2665]
          Length = 1198

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 371/1013 (36%), Positives = 550/1013 (54%), Gaps = 68/1013 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL  H+ YS+L+GA  L+++  +       ++AITD   LF A +F  KA AAG
Sbjct: 13   KDGGFVHLHTHTEYSMLDGAAKLDDLFAEAQRLGMDSLAITDHGYLFGAYDFWSKAKAAG 72

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFP-------------TVPSIVLLVSTAEGYQRLI 113
            ++PIIG +  +      + T++ KT +                  + LL  T EG   L 
Sbjct: 73   VKPIIGLEAYVAPGQQHR-TDKEKTRWGEPHQRGDDVSGGGAYTHMTLLSETTEGMHNLF 131

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             + S   L     +  R+    L +  ++GLI  TG  SG +         + A +    
Sbjct: 132  RMGSIASLDSVYAKWPRLDRELLSQY-SKGLIATTGCPSGEVQTRLRLGQYREAMQAASD 190

Query: 174  FKKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            F+ +FG   Y     H G D  R   + + +LA    LP VATN+  +  E D +AH+ L
Sbjct: 191  FRDIFGKDNYYCEIMHHGLDIERRVVTDLRRLAKDLGLPFVATNDLHYTHEHDAKAHEAL 250

Query: 232  MAVAHSTVVSQKDRPR-------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
            +A+   + +++    +          ++YLK+  +M  +F++LPEA +NT+ IA RC   
Sbjct: 251  LALQSGSKLNEPSYDQGGSRFAFSGTEYYLKSPRQMRELFAELPEACDNTLLIAERCEVE 310

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                A  +P F   E +D    E + L  +  +GL  R   G           R++ D+E
Sbjct: 311  FDTKANYMPVFPTPEGED----ETSWLIKEVASGLAYRYPDGV------PDHVRKQADYE 360

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L+VI  M F GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYAL ITD+DPL+  L+F
Sbjct: 361  LDVIISMGFPGYFLVVADFINWAKENGIRVGPGRGSGAGSMVAYALRITDLDPLKHGLIF 420

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNPDR+SMPDFD+DF   RR EVI YV  KYG ERV  I+T+G+++ K AL+D  R 
Sbjct: 421  ERFLNPDRVSMPDFDVDFDDRRRSEVIDYVTRKYGDERVTMIVTYGTIKTKQALKDSARV 480

Query: 465  LQMPYSQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            +  P+S  + L K +P              DPA P   +A    + FRE    DP    +
Sbjct: 481  MDQPFSMGESLTKALPPAVMAKDIPLKDIEDPAAPRYGEA----APFRELIATDPVAKEV 536

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
             E ++ LEGL R    HAAG+++   P+  ++P+ R ++    +TQF+    E  GLIK 
Sbjct: 537  FETAKGLEGLKRQWGVHAAGVIMSSVPVIDVIPIMRRLQDGQVITQFDYPMAESLGLIKM 596

Query: 572  DFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            DFLGL+ LT++  +++ + A +GV +DL  +  DD   Y LL    TLG+FQL+   MR 
Sbjct: 597  DFLGLRNLTIISDAIENVKANQGVDLDLETLDVDDPAAYELLARGDTLGVFQLDGGPMRS 656

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE---- 684
             L+ M+PD  EDI A ++LYRPGP+  ++   Y  RKNG+++I  IHP ++  L+E    
Sbjct: 657  LLKMMRPDNFEDISATIALYRPGPMGANSHTNYALRKNGQQEITPIHPELEEPLREILDT 716

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+I+YQEQVM IAQ ++GYSL +AD+LRRAMGKK K E+DKQ E F  G    G S+ 
Sbjct: 717  TYGLIVYQEQVMAIAQKVAGYSLGQADILRRAMGKKKKSELDKQYEAFHQGMLDRGYSEA 776

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
                ++++L  F+DY FNK+H+AAY ++SY TA++K HYP E++AA +T   D+ +K+  
Sbjct: 777  AVKALWDILLPFSDYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLAM 836

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFD 863
            +  + R   I ++PP VN   + F      I + + A++ VG    + +++   D   + 
Sbjct: 837  YLNECRHMGITVLPPDVNESHLTFTPVGRDIRFGMGAVRNVGANVVKGMVQGREDGGSYT 896

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
               DF ++V     N+R +ES++ AGA D  GY+R  LL   +     A   +K + +  
Sbjct: 897  GFGDFLAKVPLVVCNKRTIESMIKAGAFDSLGYARRALLAVHEEAVD-ATVAQKRKEDHG 955

Query: 924  E---NIFAHEKGTFSDKITLEKFSVEN-----SSVRFENEQRVLGFYFSGHPL 968
            E   ++FA   G   D    +  +V +        +   E+ +LG Y S HPL
Sbjct: 956  EFTFDLFAPGGGDEDDSDAADGVAVPDLPEWAKKEKLAFEREMLGLYVSDHPL 1008


>gi|291539914|emb|CBL13025.1| DNA polymerase III catalytic subunit, DnaE type [Roseburia
            intestinalis XB6B4]
          Length = 1156

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 369/1052 (35%), Positives = 594/1052 (56%), Gaps = 50/1052 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F + A AAGI+P
Sbjct: 2    SFTHLHVHTEYSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYKAARAAGIKP 61

Query: 70   IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I+GC++ +       +  + G   +     +VLL    +GYQ L+++VS+ ++ +     
Sbjct: 62   ILGCEVYVAPGSRFDRELSHGDDRYY---HLVLLAENNKGYQNLMKIVSKGFV-EGYYYK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187
             R+ +  L E   EG+I L+   +G + R       + A++    ++K FG    ++ LQ
Sbjct: 118  PRVDMEVL-ETYHEGIIALSACLAGEVQRYLVRGLYEEAKETAYKYEKCFGKGNFFLELQ 176

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H     +   + +++++    + LVATN+  +   ED E HD+L+ +     +S ++R 
Sbjct: 177  DHGIPEQKTVNAGLMRMSQETGIELVATNDVHYTYAEDAEPHDILLCLQTGKKLSDENRM 236

Query: 247  RVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R     Y +K+  EM ++F    +A++NT +IA RC+  ++     LP F   E  D   
Sbjct: 237  RYEGGQYFVKSEEEMRALFPYAAQAIDNTQKIADRCNVEIEFGVTKLPHFDVPEGYD--- 293

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 L      GL  R            ++   +LD+EL+VI +M +  YFLIV DFI 
Sbjct: 294  -SWTYLNKLCHEGLVRRYPD-------KHEELLPKLDYELSVIQKMGYVDYFLIVWDFIN 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+ + IPVGPGRGS AGS+ +Y   IT+IDP+R++LLFERFLNP+R++MPD DIDFC +
Sbjct: 346  YARTHGIPVGPGRGSAAGSLVSYTTGITNIDPIRYNLLFERFLNPERVTMPDIDIDFCYE 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV  KYG + V QI+TFG+L A+  +RDVGR + +PY+  D + K IPN+   
Sbjct: 406  RRSEVIDYVIEKYGKDCVTQIVTFGTLAARGVIRDVGRVMDLPYNFCDTIAKNIPNELNI 465

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+  +   R    +D +V RL++++++LEGL RH S HAAG+VI  + + + VP+
Sbjct: 466  TID-KALIMNPELRSMYESDETVKRLIDMAKRLEGLPRHTSMHAAGVVISQKAMDEYVPL 524

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
             R     +  TQF M  IE+ GL+K DFLGL+TLT++  ++  + +  G+K+D+  I ++
Sbjct: 525  SRSSDGTI-TTQFVMTTIEELGLLKMDFLGLRTLTVISDAVKLVEKNHGIKIDVDNIDYN 583

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +    + T    G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   
Sbjct: 584  DKKVLDSIGTGRCDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPKYIKG 643

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            KN  E +  +   ++P+L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM KK +  
Sbjct: 644  KNEPESVTYVCKELEPILEPTYGCIVYQEQVMQIVQNLAGYTMGQADNIRRAMSKKKQYV 703

Query: 725  MDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            +D +++ F        I G   NGIS+  A  I++ +  FA Y FNKSHAAAYAV++YQT
Sbjct: 704  IDAERQNFVYGNEEQGIKGCIANGISEQAANQIYDSMVDFAKYAFNKSHAAAYAVVAYQT 763

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K +YPVEF+AA MT  +DN  K+ ++    RQ  I+++ P +N     F    + I 
Sbjct: 764  AYLKYYYPVEFMAALMTSVIDNTRKVAEYIYSCRQMGIKVLSPDINEGEGRFLATKDGIR 823

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y + AIK +G      I+ E  A+  + +L DF SRV  +++N+R +E+L+ AGA D   
Sbjct: 824  YGMYAIKSIGRQVIDIILAEREANGKYTTLSDFLSRVAGREVNKRAVENLIKAGACDGLD 883

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKI-TLEKFSVENSSV 950
             +R Q+L   + +       +KN      ++F      EK  +  +   +E+++ E   +
Sbjct: 884  GNRQQMLLVYNTLIDNLNQEKKNSLAGQMSLFDLVSEEEKKAYEVRFPNVEEYTKE---I 940

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY--------EESVATIRGN-NIRLAAMV 1001
            +   E+ VLG Y SGHPL+ Y+   RK  I           E +   I+ N ++ +  ++
Sbjct: 941  KLGFEKEVLGIYLSGHPLEEYEEKWRK-NISAVTADFMLDEETNAVKIKDNQSVVIGGII 999

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              K  K T++   + ++T  +     E   FP
Sbjct: 1000 TEKTIKYTKQNKAMAFITVEDLFGTVEVIIFP 1031


>gi|167753692|ref|ZP_02425819.1| hypothetical protein ALIPUT_01973 [Alistipes putredinis DSM 17216]
 gi|167658317|gb|EDS02447.1| hypothetical protein ALIPUT_01973 [Alistipes putredinis DSM 17216]
          Length = 1287

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 368/1102 (33%), Positives = 583/1102 (52%), Gaps = 88/1102 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL VH+ YS+L+GA +++ ++ +  A    A+AITD  N++    F   A  AGI+
Sbjct: 70   PDFVHLHVHTQYSILDGAAAISPLIKRAKALGMKALAITDHGNMYGVKNFHDVATDAGIK 129

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQ 127
            PI+GC+  + +++  +     K        ++LL     GY  L ++VS  Y   +G   
Sbjct: 130  PILGCETYV-VRNRFEKDKDEKAG----DHLILLAKNLTGYHNLCKIVS--YSFTEGFYY 182

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              RI    L++   EGLI  +    G + +A   N  + AE+ +  FK +FGD  Y+ LQ
Sbjct: 183  KPRIDKKLLEQY-HEGLICCSACLGGEVPQAIMRNDMEEAEQVVRWFKSIFGDDYYLELQ 241

Query: 188  RHRGYDRYRESQV-----------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
             H   D  +++ V           ++L+    +  + +N+  F+  ED  AHD L+ +  
Sbjct: 242  LHPSGDPRKDADVYENQLLVNKALLELSAKCGVKYICSNDVHFILAEDAVAHDHLICLNT 301

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-------------- 282
               +   +R R T   YLK+  EM  +F D PEAL  T+EIA +                
Sbjct: 302  GRDLDDPNRMRYTFQEYLKSPEEMAQLFPDHPEALATTLEIADKVEEYKLTHAPLMPNFP 361

Query: 283  FILQVHAPI------LPRFIEKE--------CDDIQK-----EEENELRNKAVAGLEVRL 323
               + H P       L + IE +        C  +++     EE  E   K +   +   
Sbjct: 362  PPPEFHMPFEELRESLVKKIEDQEELARIDACHSVEELDAWAEESKERSEKLMTAKQFCY 421

Query: 324  AQGAIAKGYH-------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             +    KG H       +++  +R+ +EL+ I  M F GYFLIV D+I+ A++  + VGP
Sbjct: 422  LKDLTYKGAHLRYGAELSEEVEKRIRYELSTIEWMGFPGYFLIVWDYIRAAREMGVSVGP 481

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGS AGSV AY L IT+IDPL++ LLFERFLNP+R+S+PD D+DF +D RD+V+ Y  +
Sbjct: 482  GRGSAAGSVVAYCLKITNIDPLKYDLLFERFLNPERISLPDVDVDFDEDGRDDVLHYCVH 541

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            KYG +RVAQI+TFG++  K A+RDV R  ++  S+ DRL KL+P+             D 
Sbjct: 542  KYGQKRVAQIVTFGTMAPKLAIRDVARVQKLALSESDRLAKLVPDKVTPDKKAGETPFDF 601

Query: 497  RFRE-----ARLADPS--VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             ++E     A    P+  +   L+ ++KLEG  R    HA G++IG   L    PM    
Sbjct: 602  CYKESPELAAERESPNQLIRNTLKYAEKLEGSIRQTGVHACGVIIGQDDLENFAPMAIAK 661

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
             +DL V +F  K +E  GLIK DFLGL+TL++++ ++  +    G+ VD+  IP DD  T
Sbjct: 662  DADLNVVEFEGKEVESVGLIKMDFLGLRTLSIIKDAVTNVKNVHGIDVDIDNIPLDDAPT 721

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y + +   T G+FQ ES GM++ L  ++P+  ED+IA+ +LYRPGP++ I  +  RK+G 
Sbjct: 722  YEVFSRGDTTGLFQFESPGMKKHLRNLKPNRFEDLIAMNALYRPGPMEYIPNFIARKHGL 781

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E +      ++  L +T G+ +YQEQVM ++Q L+G++  EAD LR+AMGKK +  +DK 
Sbjct: 782  EPVTYDIADMEEYLSDTYGITVYQEQVMLLSQKLAGFTGGEADTLRKAMGKKQRAVLDKM 841

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K +FI G SK G    I   I+     FA Y FNKSH+  YA I+YQT ++K HYP EF+
Sbjct: 842  KPKFIEGCSKRGHDAKICEKIWGDWEAFASYAFNKSHSTCYAYIAYQTGYLKAHYPSEFM 901

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF---KVGDNRIYYSLAAIKGV 845
            AA ++  + ++++I  +  + ++  I+++ P +N    +F   K GD R  + LAA+KGV
Sbjct: 902  AALLSRNLSDIKQITLYMNECKRMGIRVLGPDINESLNNFSSNKAGDVR--FGLAAVKGV 959

Query: 846  GTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ 903
            G      I+ E + +  F  + DF  RV+   +NR+ LE++ +AG  D   G+ R +   
Sbjct: 960  GEAAVESIVAERNKNGKFKDIYDFFERVNYTAVNRKCLENIAYAGGFDSISGFHRCKFFG 1019

Query: 904  S----------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR-F 952
            +          ++ + +Y Q  +  + N  +++F   +G    +  +     + S++   
Sbjct: 1020 TDLRDSSSTTFIEQLVRYGQRFQSEKDNAQQSLFGGGEGVVDIQHPVIPACQDWSTLETL 1079

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTR 1010
              E+ ++G Y S HPLD Y  I+R M        +++ ++RG  I +A MV++ Q   T+
Sbjct: 1080 GKEREMIGLYLSAHPLDDYAVIIRNMCKTQLSDLDNLESLRGQEIAVAGMVIATQNLVTK 1139

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G   G  T  +    +E   F
Sbjct: 1140 TGKPWGKFTLEDYNGTHEFALF 1161


>gi|296269404|ref|YP_003652036.1| DNA polymerase III subunit alpha [Thermobispora bispora DSM 43833]
 gi|296092191|gb|ADG88143.1| DNA polymerase III, alpha subunit [Thermobispora bispora DSM 43833]
          Length = 1174

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 388/1074 (36%), Positives = 575/1074 (53%), Gaps = 75/1074 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA  L  +   +     PAIAITD  NL  + +F ++A AAGI+P
Sbjct: 4    SFVHLHVHTEYSMLDGAARLKQMFKLVGELGMPAIAITDHGNLHGSYDFYKQATAAGIKP 63

Query: 70   IIGCQLDIDMQDNL------------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            IIG +  +  +               +  +     F T   + +      G   LI+L S
Sbjct: 64   IIGIEAYVAPESRFNKQPVLWGEPHQRGDDVSAGGFYT--HLTIWARNKTGLHNLIKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            R Y     ++  R+    L E   EGL+  TG  SG +           A K    ++++
Sbjct: 122  RAYTEGFVRKWARMDAELLAE-HAEGLMASTGCPSGEVQTRLRLGQYDEALKAAAKYQEI 180

Query: 178  FG-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            FG +  Y+ L  H G D  R     +V++  T  LP V TN+S +  + D   HD L+ +
Sbjct: 181  FGKENFYLELMDH-GLDIERRVRDDLVRIGRTLGLPPVVTNDSHYTYQSDAAGHDALLCI 239

Query: 235  AHSTVVSQKDRPRVT-PDHYLKNRSEMVSI-FSDL-PEALENTVEIARRCSFI-LQVHAP 290
                 ++  DR R    ++Y+K   EM ++  SDL  E   NT+ IA +        +  
Sbjct: 240  QTGKQLNDPDRFRFEGTEYYIKTPEEMRALDSSDLWQEGCRNTLAIAEKVDPTGFFEYKN 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            ++P F   E     K EE   R K   G+  R   G         ++R+ ++ E++VI +
Sbjct: 300  LMPTFPIPEG----KTEEEYFREKVWEGMRRRFPDGV------DDEHRELVEKEISVIVQ 349

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F  YFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DP+   L+FERFLNP
Sbjct: 350  MGFPSYFLVVADFIMWAKNNGIRVGPGRGSAAGSLVAYALGITDLDPIPHGLIFERFLNP 409

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPD D+DF + RR +VIRYV  K+G ++VA I TFG+++AKAA++D  R L  PY+
Sbjct: 410  ERVSMPDIDVDFDERRRADVIRYVTEKWGADKVAMIATFGTIKAKAAIKDAARVLGYPYA 469

Query: 471  QVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
              DR+ K  P              DP HP   +A       R+    DP V   +++ + 
Sbjct: 470  LGDRITKAFPPAVMGKDIPLSGIFDPEHPRYHEA----GELRKMYEEDPDVKAAIDLGRG 525

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R    HAAG+++   PL+  +P+ R       +TQF+    E  GL+K DFLGL+
Sbjct: 526  LEGLIRQTGVHAAGVIMSSEPLTDHIPIMRRDSDGAIITQFDYPTCEALGLLKMDFLGLR 585

Query: 578  TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT++   L  + A  G K+DL  +P DD +TY LL    TLGIFQL+  GMR  L  M+
Sbjct: 586  NLTIIDDCLKMIEANTGEKIDLLELPLDDAKTYELLARGDTLGIFQLDGGGMRSLLRLMK 645

Query: 637  PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVII 690
            PD  EDI A ++LYRPGP+  ++ + Y  RKNG+++I  IHP ++  LK+    T G+I+
Sbjct: 646  PDNFEDISAALALYRPGPMGANSHINYALRKNGQQEITPIHPELEEPLKDILSTTYGLIV 705

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVM IAQ ++ Y+L  AD+LRRAMGKK KEE+D+Q E F  G  +NG S      ++
Sbjct: 706  YQEQVMAIAQKVANYTLGGADLLRRAMGKKKKEELDRQFEFFEKGMKENGFSDEAIRALW 765

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            ++L  F+DY FNK+H AAY ++SY TA++K +YP E++AA +T   D+ +K   +  + R
Sbjct: 766  DILVPFSDYAFNKAHTAAYGLVSYWTAYLKANYPAEYMAALLTSVKDDKDKSALYLNECR 825

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFC 869
            +  I+++PP VN    DF      I + L+A++ VG      I++A  +K  F    DF 
Sbjct: 826  RMGIKVLPPDVNDSDFDFTPRGGDIRFGLSAVRNVGANVVDGIIKARKEKGRFTDFADFL 885

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             +V ++  N+RV+ESL+ AGA D  G+ R  L    +        ++KN     +++F  
Sbjct: 886  RKVPAQVCNKRVIESLIKAGAFDSLGHERKGLFMIHEQAVDAVIDIKKNEAIGQDSLFGA 945

Query: 930  EKG----TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
             +G    TF  ++   ++  + + ++FE E  +LG Y S HPL   + IL      G + 
Sbjct: 946  VEGAEDTTFDVQVPPGEWD-KRTLLQFERE--MLGLYVSDHPLLGVEHIL----AAGSDC 998

Query: 986  SVATIR------GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            S+A ++      G  + +  ++   Q+K T+KG      T  +     E   FP
Sbjct: 999  SIAALQDESHPDGQVVTVGGILSGLQRKITKKGDTWVLATLEDLEGSIEVMIFP 1052


>gi|28493477|ref|NP_787638.1| DNA polymerase III subunit alpha [Tropheryma whipplei str. Twist]
 gi|28476519|gb|AAO44607.1| DNA polymerase III alpha chain [Tropheryma whipplei str. Twist]
          Length = 1164

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 391/1053 (37%), Positives = 568/1053 (53%), Gaps = 59/1053 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA    +++ K A D+ PAIAITD  N F A +F + A    I P
Sbjct: 6    SFVHLHVHTDYSMLDGAARTEDLMRKAAEDKMPAIAITDHGNTFGAFDFWKTAKTYDINP 65

Query: 70   IIGCQLDIDMQDNLK------MTNQGK---TPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            IIG +  +    N K        + G    +       + LL    EG   L +L S + 
Sbjct: 66   IIGMEAYLTPGTNRKEKVRKFFASGGPDDVSAGGAYTHLTLLSQNNEGMHNLFKL-SSLA 124

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179
             ++      RI +  L +  + GLI  TG  SG I           A +     + +FG 
Sbjct: 125  SIEGYYFKPRIDIELLNQY-SNGLIATTGCPSGEIQTRLRLGQYSEARQAAAQMRDIFGP 183

Query: 180  DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +  Y  +  H    ++     +++LA    LPL+ATN+  +++ ED  +H  L+ V   +
Sbjct: 184  ENYYCEVMDHNLEIEKAVMPDLLRLAGDLGLPLLATNDLHYVNSEDSASHAALLCVQSGS 243

Query: 239  VVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             ++  +R +   D  YLK+ SEM  +F DLPEA +NT+ +A RC          +PRF  
Sbjct: 244  TINDPNRFKFDSDEFYLKSSSEMRILFEDLPEACDNTLLVAERCHINFDTQRSFMPRFSV 303

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E +     E +   ++   G+  R   G       ++   ++ ++E+ V+    ++GYF
Sbjct: 304  PEGE----TENSWFASEVKRGIASRYPNGP------SRRVIEQAEYEIRVVQEAGYAGYF 353

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK N I VGPGRGSGA S+ AYA+ ITD+DPL   L+FERFLNP R+SMPD
Sbjct: 354  LIVADFINWAKLNGIRVGPGRGSGAASMAAYAMRITDLDPLEHGLIFERFLNPARISMPD 413

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDF + RR EVI YV  KYG + VAQI+TF +++AK AL+D  R L  PYS  +RL K
Sbjct: 414  FDIDFDERRRGEVIDYVTKKYGSDHVAQIVTFATIKAKQALKDSARVLSYPYSFGERLTK 473

Query: 478  LIPNDPA---HPVSLQAIADD--SRFREARL------ADPSVDRLLEISQKLEGLYRHAS 526
             +P  PA     + L+AI D   SR REA        +D  + ++   ++ LE L R  +
Sbjct: 474  AMP--PAVMGREIPLRAIFDTTHSRHREASEVRQMIESDYEMQQIFNTAKGLENLKRQWA 531

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HAAG+++ D P+  ++P+ +       VTQF+    E  GL+K DFLGL+ LT++  +L
Sbjct: 532  VHAAGVIMSDAPIIDIIPIMKRESDGHIVTQFDYASCESLGLVKMDFLGLRNLTIIDDAL 591

Query: 587  DFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
              + Q +  KVDL  +P DD E Y LL    TLG+FQL+S  +RQ LE MQPD  +DI A
Sbjct: 592  ANIRQNKNTKVDLENLPLDDPEVYKLLRRADTLGVFQLDSGPIRQLLELMQPDSFDDISA 651

Query: 646  LVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVMQIA 699
             ++LYRPGP+   +   Y  RKN K++I  IHP +      +L  T G+I+YQEQV+ IA
Sbjct: 652  AIALYRPGPMGARSHTNYALRKNRKQEIDHIHPELTKDLSVLLSSTYGLIVYQEQVIGIA 711

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q L+G++L EADVLR AMGKK K+E+D+Q  +F +G  K G S      ++ +L  F+DY
Sbjct: 712  QKLAGFTLEEADVLRWAMGKKKKDELDRQYNKFANGMRKAGYSDGATEALWNVLLPFSDY 771

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNK+HA AY +ISY TA++K HYP E++AA +T    + +K+  + Q+ R   I+++ P
Sbjct: 772  AFNKAHATAYGLISYWTAYLKAHYPTEYMAALLTSVETSRDKLGLYLQECRHMCIKVLLP 831

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
             +N     F      I + L AIK VG      I+E   D PF SL DF  R+    LNR
Sbjct: 832  DINVSRSGFTPSGENILFGLGAIKNVGANLIDDILEVREDGPFVSLIDFVQRMPHSVLNR 891

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R + SL+ AGA D    +R    +SL +I +    +E  + N   +  +   G   +   
Sbjct: 892  RSVMSLIQAGAFDSIHPNR----RSLMDIHRSV--LENCQANARRSDVSLLDGLLDE--- 942

Query: 940  LEKFSVE-----NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             E FS       ++  R + E+ +LG Y S HPLD  +  L K       E ++    + 
Sbjct: 943  YEGFSPPDIPDWDNRERLKYEREMLGMYVSSHPLDGLEDSLLKFRDCSIAECISRKPQDV 1002

Query: 995  IRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKE 1026
            IR+A ++ S + K  R+ G R       + + E
Sbjct: 1003 IRVAGLITSVEHKVARRTGMRYAHAILEDTSGE 1035


>gi|313677443|ref|YP_004055439.1| DNA polymerase iii, alpha subunit [Marivirga tractuosa DSM 4126]
 gi|312944141|gb|ADR23331.1| DNA polymerase III, alpha subunit [Marivirga tractuosa DSM 4126]
          Length = 1433

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 371/1070 (34%), Positives = 583/1070 (54%), Gaps = 76/1070 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  H+ +S+L+    + ++++K      PAIA+TD  N+  A  F + A  AGI+P
Sbjct: 245  NFVHLHCHTQFSILQSTTEIPSMVNKAKEMGMPAIAMTDHGNMMGAYNFVRDANKAGIKP 304

Query: 70   IIGCQLDIDM-QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I+GC+  +   ++N K  + G   F TV    LL     GY  L +L S  ++  +G   
Sbjct: 305  IVGCEYFLTQDRNNKKNKDDG---FQTV----LLAKNKAGYHNLAKLSSIAFV--EGFYY 355

Query: 129  V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            V RI    L +   E +I  TGG  G +           AE+  L +K+ FGD  YV L 
Sbjct: 356  VPRIDREALVQY-KENIIATTGGLWGEVPFLILNAGEAQAEEAFLWWKEQFGDDFYVELN 414

Query: 188  RHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            +H   +  + ++V+ + A  +++   A NN+ + ++ED EA D+L+ V       ++ +P
Sbjct: 415  QHGVPEEQKVNEVLLKFAKKYDVKYFAANNTYYTNKEDAEAQDILLCVKDGETTGEQGKP 474

Query: 247  R--------------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +                 + Y+K+  EM  +F+D PEA+  T EIA +          +L
Sbjct: 475  KKYVGKRGREYRFGLPNDEFYIKSPDEMKKLFADYPEAIACTAEIAEKIEGFELARDVLL 534

Query: 293  PRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIA 349
            P++ I +E  D  K+ EN       A L     +GA  K Y     + ++RLDFEL  I 
Sbjct: 535  PKYDIPQEFID-PKDAENGGNRGENAYLRHITYEGA-KKRYPEITAEIKERLDFELETIE 592

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            R  + GYFLIV DF   A++  + VGPGRGS AGS  AY   IT+IDP+++ LLFERFLN
Sbjct: 593  RTGYPGYFLIVQDFTTAAREMGVSVGPGRGSAAGSAVAYCTAITNIDPIKYDLLFERFLN 652

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            PDR+S+PD DIDF    R +VI YV  KYG  +VAQI T+G++ AK+A+RD  R +++P 
Sbjct: 653  PDRVSLPDIDIDFDDHGRQKVIDYVIEKYGANQVAQITTYGTMAAKSAIRDTARVMELPL 712

Query: 470  SQVDRLCKLIPNDPAHPVSLQAI---ADDSRFREARL------------------ADPSV 508
               DR+ KL+P+     + L+A+   A D +   A+L                  A+ + 
Sbjct: 713  MDADRIAKLVPD-----IKLKALFDLASDKKKLSAKLKNNGEAISKAEELLNLAKANDAS 767

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
             +++  ++ LEG  R+   HA G++I    +++ VP+     SD+  TQF+   +E AGL
Sbjct: 768  AKVINQARVLEGSVRNTGIHACGVIITPDDITKFVPVALAKDSDMYCTQFDNAVVENAGL 827

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            +K DFLGLKTLTL++ ++  + +R GVK+D    P DD +TY L     T+GIFQ ES G
Sbjct: 828  LKMDFLGLKTLTLIKDAVRIVEERHGVKLDPDEFPIDDPKTYELFQKGETVGIFQYESPG 887

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            M++ L  ++P    D+IA+ +LYRPGP++ I  +  RKNG E+I    P ++  L+ET G
Sbjct: 888  MQKYLRDLKPTEFSDLIAMNALYRPGPLEYIPNFVKRKNGLEEISYDLPEMEEYLQETYG 947

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            + +YQEQVM ++Q L+G++  EADVLR+AMGKKI   +++ K +FI+  ++ G  K +  
Sbjct: 948  ITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKIFALLEELKPKFINQGAEKGHPKDVLE 1007

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             I++    FA Y FNKSH+  YA ++YQTA++K HYP E++A+ ++  M  +  +  F +
Sbjct: 1008 KIWKDWEAFAAYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMASVLSNNMGQITDVTFFME 1067

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIM-EASADKPFDSL 865
            + ++  I+++ P VN     F V DN +I + LAAIKG G+     I+ E  ++  +  +
Sbjct: 1068 ECKRAGIEVLGPDVNESNSGFTVNDNGQIRFGLAAIKGAGSAAVESIIQERKSNGQYKDI 1127

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQWVEK 917
             DF  R+  K +N++  ESL  AG  DCF  Y R Q L S       ++ I KYAQ ++ 
Sbjct: 1128 FDFAERIPLKSVNKKTFESLAMAGGFDCFKEYHRKQFLASDNGEGTLIEKIIKYAQKLQH 1187

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
             + +   ++F  E G       + +    +   +   E+ V+G + SGHPLD Y+  +  
Sbjct: 1188 EKDSAQTSLFGGEGGVAIPPPRVAEMEPYSELEKLNIEKEVVGLFISGHPLDEYRFEMES 1247

Query: 978  MGIKGYE-----ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
                        ES+A+   N I++  +V +   ++T+ G   G +T  +
Sbjct: 1248 FCNTQVSELNDIESLAS--KNEIKVGGIVTAVAHRQTKTGKPFGTLTLED 1295


>gi|91216678|ref|ZP_01253643.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC 700755]
 gi|91185147|gb|EAS71525.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC 700755]
          Length = 1452

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 369/1071 (34%), Positives = 581/1071 (54%), Gaps = 83/1071 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------- 58
            SFVHL  H+ +S+L+  +++ +++   A    PA+AITD  N+  A  F           
Sbjct: 261  SFVHLHNHTQFSVLQSTMAVPDLVAAAAKHNMPAVAITDHANMMGAFHFVNAVKKHNSAI 320

Query: 59   --SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
                +  +  I+PIIGC+  +  +D+   T++          +V+L    +GY  L ++ 
Sbjct: 321  ANDSENTSQPIKPIIGCEFFV-CEDHTDRTHKDNGY-----QMVILAKNKKGYHNLAKMS 374

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S  +   +G   +      L E   + LI+L+G   G I           AE+ L+ +K+
Sbjct: 375  SMGFT--KGFYYIPRIDKKLIETYKDDLIVLSGSLYGEIASKLLNLGENQAEESLVWWKE 432

Query: 177  LFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             FGD  YV + RH+  D  R ++ +++LA  H++ LVATNN+ +  ++D  AHD+L+ V 
Sbjct: 433  TFGDDFYVEIMRHQQEDEERANEALIRLANKHDINLVATNNTYYADQKDANAHDILLCVK 492

Query: 236  ----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
                 +T + +    R       +Y K+  EM S+F DLP+A+ NT  IA +        
Sbjct: 493  EGEKQATPIGRGRGYRYGLPNDQYYFKSAEEMKSLFKDLPQAISNTEAIANKVEAFELAR 552

Query: 289  APILPRFI-------EKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
              +LP F+       E +  D  K  EN  L++    G + R        G  +++ + R
Sbjct: 553  EVLLPAFVIPEQFLDEADKTDAGKRGENAYLKHLTFEGAKRRY-------GELSEEIKDR 605

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            LDFEL+VIA   + GYFLIV DFI+ A+K  + VGPGRGS AGS  AY L IT+IDP+++
Sbjct: 606  LDFELSVIANTGYPGYFLIVEDFIREARKMGVSVGPGRGSAAGSAVAYCLKITNIDPIKY 665

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNP+R+SMPD DIDF  + R +V+ YV  KYG  +VAQIIT+G++ AK+A+RD
Sbjct: 666  DLLFERFLNPERVSMPDIDIDFDDEGRSKVMDYVIEKYGQNQVAQIITYGTMAAKSAIRD 725

Query: 461  VGRALQMPYSQVDRLCKLIPN--DPAHPVSLQAIADDSRFREARLADPSVDRLLEI---- 514
              R L +P  + DR+ KLIP+        S+       +FR        VD++LE+    
Sbjct: 726  TARVLDLPLYEADRIAKLIPDMSKLGKIFSMNEKEIRKKFRSEE-----VDKVLELIAIS 780

Query: 515  ------------SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
                        ++ LEG  R+   HA G++I    +++ VP+     S+L VTQF+   
Sbjct: 781  EQDSPEAETVNQARILEGSVRNTGIHACGVIITPDDITKFVPVSVAKDSNLYVTQFDNSV 840

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            +E AGL+K DFLGLKTLTL++ +++ + A+  V +D    P DD +TY L     T+GIF
Sbjct: 841  VEDAGLLKMDFLGLKTLTLIKDTVEIVKARHEVDLDPEAFPLDDEKTYELFQRGETVGIF 900

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            Q ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RK+G+E I    P +   
Sbjct: 901  QYESLGMQKHMKDLKPTVFGDLIAMNALYRPGPMEYIPSFIKRKHGEEDISYDLPEMQEY 960

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L+ET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK+K+ + K K +FI+ A  NG 
Sbjct: 961  LEETYGITVYQEQVMLLSQKLASFTKGEADVLRKAMGKKLKDVLAKLKPKFINQAKDNGH 1020

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            ++     I++    FA Y FNKSH+  YA ++YQTA++K HYP E++AA ++  M +++K
Sbjct: 1021 NEEKLEKIWKDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYPAEYMAAVLSNNMSDIKK 1080

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            +  F ++ ++  + ++ P VN     F V  D+ + + + AIKGVG      I+E     
Sbjct: 1081 VSFFMEECKRMRLPVLGPDVNESYYKFSVNKDDAVRFGMGAIKGVGGGAVNTIVEHRKKG 1140

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYA 912
             + S+ D   R+D +  N++  ESL +AGA D  G   R Q  Q+       L+ + KYA
Sbjct: 1141 HYLSIFDLSKRIDLRAANKKAFESLAYAGAFDSLGEVHRAQYFQATDGDLTFLEKVIKYA 1200

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
               ++N+ +   ++F         +  +      +S    + E+ V+G + SGHPLD +K
Sbjct: 1201 ARYQENKNSSQVSLFGESSEVQIPEPEVPPCEPWHSMRTLKAEKEVVGLFLSGHPLDDFK 1260

Query: 973  PILRKMGIKGYEESVATIRGN---NIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
              +        +E VA I  +    + LA +V     K ++ G   G+ TF
Sbjct: 1261 LEINSFCRSNLKE-VAEIENHLNKELSLAGVVTDVNHKVSKTGK--GFATF 1308


>gi|86130781|ref|ZP_01049380.1| DNA polymerase III, alpha subunit [Dokdonia donghaensis MED134]
 gi|85818192|gb|EAQ39352.1| DNA polymerase III, alpha subunit [Dokdonia donghaensis MED134]
          Length = 1463

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 371/1078 (34%), Positives = 570/1078 (52%), Gaps = 87/1078 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            F HL  HS +S+L+   S+ +I+   AA + PA+A+TD  N+  A  F++          
Sbjct: 262  FAHLHNHSQFSILQSTASVQDIVKAAAAQKMPAVAMTDMGNMMGAFHFTKAVKSHNAGVK 321

Query: 61   KACAAGIQP-----------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
            KA AA ++            IIGC+       N+ + ++ K+       IV+L     GY
Sbjct: 322  KANAAAVEAGEDPEGVPLKAIIGCEF------NVCVDHKNKSQKDNGYQIVILAKNKNGY 375

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            Q L ++ S  Y  D      RI  + + +   + LI+LTG   G +           AE+
Sbjct: 376  QNLCKMASIAYT-DGFYYVPRIDRNVIMQY-RDDLIVLTGNLYGEVPSKILNVGENQAEE 433

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAH 228
             L+ +K+ FGD LY+ L RH   D  R   V + L+  H +  VA+NN+ ++ + D +AH
Sbjct: 434  ALIWWKEQFGDDLYIELMRHGQEDEDRVMPVLIALSRKHNIKTVASNNTFYIDKSDADAH 493

Query: 229  DVLMAVAHS-TVVSQKDRPR------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            DVL+ V     V + K R R         ++Y K+  EM  +F+D+PEA+ N  E+  + 
Sbjct: 494  DVLLCVKDGEKVATPKGRGRGYRYGLPNDEYYFKSGEEMKILFADVPEAILNVQEVVDKI 553

Query: 282  SFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
                     +LP F         E   D  ++ E   LR+    G + R  +        
Sbjct: 554  EPYELARDVLLPAFDIPQEFVSPEDAIDGGKRGENAFLRHLVYEGAKKRYGEEL------ 607

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
            +++  +RLDFEL+VI +  + GYFLIV DFI+ A+  ++ VGPGRGS AGSV AY L IT
Sbjct: 608  SEEVTERLDFELDVIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVAAYCLWIT 667

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            +IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V++YV +KYG  +VAQIIT+G++ 
Sbjct: 668  NIDPMKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMQYVIDKYGANQVAQIITYGTMA 727

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLAD--PSVD 509
            AK+++RD  RAL +     DR+ KLIP        L+ I    D+  R +  +D  P V 
Sbjct: 728  AKSSIRDTSRALDLSLGDADRIAKLIPT----MSKLRKIFGKTDAELRSSFRSDDLPKVQ 783

Query: 510  RLLEI-------------SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
             L+ I             +++LEG  R+   HA G++I    ++  VP+     SDL VT
Sbjct: 784  ELINIETQDNLEGQMLRQARQLEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDLYVT 843

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTK 615
            QF+   +E+AGL+K DFLGLKTLTL++ ++  +  R  V +D    P DD +TY L    
Sbjct: 844  QFDNSVVEEAGLLKMDFLGLKTLTLIKDTVKLVKYRHNVDLDPENFPLDDEKTYELFQRG 903

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
             T+GIFQ ES GM++ ++ ++P   ED+IA+ +LYRPGP++ I  +  RK+G+E+I    
Sbjct: 904  DTVGIFQYESPGMQKHMQSLKPTVFEDLIAMNALYRPGPMEYIPSFVRRKHGEEEIEYDL 963

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            P ++  LKET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK    +DK K +FI  
Sbjct: 964  PAMEEYLKETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQ 1023

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            AS  G        I++    FA Y FNKSH+  YA I+YQTA++K HYP E+LAA ++  
Sbjct: 1024 ASAKGHDPEKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYLKAHYPAEYLAAVLSNN 1083

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIM 854
            M++++++  F ++A++  ++++ P VN     F V DN  + + + A+KGVGT     I+
Sbjct: 1084 MNDIKQVTFFMEEAKRMGLEVLGPDVNESFRKFTVNDNGAVRFGMGAVKGVGTGAVATIV 1143

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF--GYSRMQLLQS-------L 905
            E   D  + S+ DF  RVD +  N++  ESL  AG  D       R Q           L
Sbjct: 1144 ENRKDGKYKSVFDFARRVDLRAANKKAFESLALAGGFDELDGDTHRAQFFNDNGDGITFL 1203

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +   KY    ++N  +   ++F         +  +       +  + + E+ V+G Y SG
Sbjct: 1204 EKAVKYGARYQENENSSQVSLFGESSEVQIPEPEVPPCEEWGTMEKLKREKEVVGVYISG 1263

Query: 966  HPLDVYKPILRKM--GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            HPLD +K  +         +   +       +    ++   Q + ++ G   GW  F+
Sbjct: 1264 HPLDDFKTEMETFCNATVAHFNQMEAFVNRELTFGGVITDVQHRVSKNGK--GWAAFT 1319


>gi|89890044|ref|ZP_01201555.1| DNA polymerase III [Flavobacteria bacterium BBFL7]
 gi|89518317|gb|EAS20973.1| DNA  polymerase III [Flavobacteria bacterium BBFL7]
          Length = 1450

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 371/1073 (34%), Positives = 574/1073 (53%), Gaps = 67/1073 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            F HL  HS +S+L+   S+ +++   A +   A+A+TD  N+  A  F +   A      
Sbjct: 257  FAHLHSHSQFSILQSTASVQDLVKAAAVNDMSAVAMTDHANMMGAFHFVKAVKAHNASLV 316

Query: 67   -----------IQPIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
                       ++P+IGC+  +  DM D     N  +        IVLL     GY  + 
Sbjct: 317  NDDDNELQKKPLKPVIGCEFFVCEDMNDKSHKDNGYQ--------IVLLAKNKNGYLNIA 368

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            ++ S+ Y+ D      RI    +QE   E +I+LTG   G +           AE+ LL 
Sbjct: 369  KMSSKAYV-DGFYYVPRIDKKLIQEF-KEDVIVLTGNMYGEVPSKILNIGENQAEEALLW 426

Query: 174  FKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +K+ FGD LYV + RH   D  R ++V + L+  H + +VATNN+ ++ +ED  AHD+L+
Sbjct: 427  WKEEFGDDLYVEIMRHGQEDEDRANEVLISLSRKHNVKMVATNNTYYIHKEDANAHDILL 486

Query: 233  AVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
             V      +T + +    R      ++Y K+ +EM  +F DLPEA+ N  E+  +     
Sbjct: 487  CVKDGEKQATPIGRGRGYRYGLPNQEYYYKSATEMKLLFKDLPEAILNISEVLDKIEPFE 546

Query: 286  QVHAPILPRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                 +LP+F I ++  D Q E +NE R +      +      I  G    +  +RLDFE
Sbjct: 547  LARDVLLPKFDIPEQFLDAQDEHDNEKRGENAYLRHLTYEGAKIRYGEITPEIEERLDFE 606

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L  I +  + GYFLI  DFI+ A+  ++ VGPGRGS AGSV AY L IT++DP+ + LLF
Sbjct: 607  LETIRKTGYPGYFLITWDFIKAARDMDVAVGPGRGSAAGSVVAYCLWITNVDPIHYDLLF 666

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNPDR+SMPD DIDF  + R +V+ YV  KYG  +VAQIIT+G++ AK+++RD  RA
Sbjct: 667  ERFLNPDRVSMPDIDIDFDDENRYKVMDYVIEKYGASQVAQIITYGTMAAKSSIRDTARA 726

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADD---SRFR--------EARLADPSVDRLLE 513
            L +P ++ D + KLIP D +    + A+ D+   S+FR        E R      D   E
Sbjct: 727  LDLPLNEADHIAKLIP-DFSKLKKIFALEDNEVRSKFRGEDADMVEELRGIAAGSDLAAE 785

Query: 514  ISQK---LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
              ++   LEG  R+   HA G++I   PL+  VP+     SDL VTQF+ + +E AGL+K
Sbjct: 786  TLRQARILEGSVRNTGVHACGVIITPAPLTNFVPVATAKNSDLYVTQFDNEVVESAGLLK 845

Query: 571  FDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             DFLGLKTL+ ++ ++  + +R  + +D+  IP DD +TY L     T+GIFQ ES+GM+
Sbjct: 846  MDFLGLKTLSQIKDTVAIIKERHHIDLDIESIPLDDAKTYELFQEGKTVGIFQYESAGMQ 905

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
            + +  ++P    D+IA+ +LYRPGP++ I  + +RK+G ++I      ++  L ET G+ 
Sbjct: 906  KYMRDLKPTQFADLIAMNALYRPGPLEYIPDFIDRKHGVKEISYDLDGMEEYLSETYGIT 965

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVM ++Q L+ +S  EADVLR+AMGKK    + K K +F+     NG  + I   +
Sbjct: 966  VYQEQVMLLSQKLANFSKGEADVLRKAMGKKQMATLQKMKPKFLDNGESNGHDREILEKV 1025

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++    FA Y FNKSH+  YA I YQTA++K +YP EF+AA+++  M+ ++ + KF  + 
Sbjct: 1026 WKDWEAFASYAFNKSHSTCYAWIGYQTAYLKANYPAEFMAATLSNNMNQIKDVTKFMDEC 1085

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
            +   + ++ P VN     F V  +  + + + A+KG+G      I+E   D P+ S+ D 
Sbjct: 1086 KHMGLPVLGPDVNESNYKFTVNKHGAVRFGMGAVKGLGHGAVMTIIENRKDGPYKSIFDM 1145

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQSLDNIQ-------KYAQWVEKNRT 920
              R+D +  N++  E+L  +G  D   G +R Q     DN Q       KYAQ  ++N  
Sbjct: 1146 AKRIDLRAANKKSFEALALSGGFDGLGGENRAQYFHQSDNGQIFLEQVVKYAQKYQENEN 1205

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
            +   ++F         +  L       +  + + E+ V+G Y SGHPLD YK  +     
Sbjct: 1206 SAQVSLFGEASDVQIPEPELPICEDWGTMEKLKREKEVVGIYISGHPLDDYKKEMEFFCN 1265

Query: 981  KGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             G   S+  + G  N       V+S  Q +  K ++ GW  F+   ++YE +F
Sbjct: 1266 TGL-SSLKDLHGLVNRDLTFCGVISDVQHRITKTNK-GWGMFT--VEDYEDSF 1314


>gi|284045058|ref|YP_003395398.1| DNA polymerase III subunit alpha [Conexibacter woesei DSM 14684]
 gi|283949279|gb|ADB52023.1| DNA polymerase III, alpha subunit [Conexibacter woesei DSM 14684]
          Length = 1178

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 365/1041 (35%), Positives = 567/1041 (54%), Gaps = 48/1041 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +  HL VHS YSLL+GA  ++ +  + AA  QPA+ +TD   +  ++E  +      I+P
Sbjct: 8    ACAHLHVHSEYSLLDGACKIDALAARAAAFDQPALGLTDHGVMNGSVEMYKACKKHDIKP 67

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--LDQGKQ 127
            ++GC++ +    + +     +        + LL     GY+ L++L S  YL  L +GK 
Sbjct: 68   LLGCEVYVVDDRHFRAGRAERN------HLTLLAQNDVGYRNLVKLSSTGYLEGLHRGKP 121

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
             V      +    +EG+I LTG  +    +    +    A   +     +FG +++Y  +
Sbjct: 122  GVDF---EIMSQHSEGIIALTGCLASRFCQRLVNDRPDEARAHVDDLMNIFGREQVYFEV 178

Query: 187  QRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q++   D+ + ++ +V++A     PLV T +  +L  EDY  H  L+ V   + +++   
Sbjct: 179  QKNGIADQDKANEGIVRIAREVGRPLVGTGDVHYLRREDYHHHTALLCVQTKSTLAEPKM 238

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               T + YLK+  EM   F++ P+AL  T+E+A RC    QV  P+  + I        +
Sbjct: 239  TFDTNEFYLKSNQEMADAFAEWPDALPTTLEVAERC----QVEIPLGGQLIPSYPTPNGE 294

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            EE   LR   + GL +R      A         +R++ EL VI +M F+ YFLIV DF++
Sbjct: 295  EERAYLRQLVLDGLHLRYGNPPPAAAV------ERMEMELAVIDKMGFNAYFLIVWDFVR 348

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            ++K+N + VGPGRGS AGS+ AY L ITD+DPL + LLFERFLNP+R+SMPD DIDF   
Sbjct: 349  YSKENGVAVGPGRGSAAGSIVAYCLAITDVDPLAYDLLFERFLNPERVSMPDIDIDFSVR 408

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP-- 483
             R+ VIRYV  KYG E VAQIITFG +  +AA RD  R L   Y   D+L KLIP DP  
Sbjct: 409  GRERVIRYVTEKYGRESVAQIITFGKMFPRAATRDAARVLGHDYGAGDKLAKLIP-DPIM 467

Query: 484  AHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              P S    +      R    ++P   +++++++ LEG+ R++S HAA +VI DRPL+ +
Sbjct: 468  GRPPSFDDCLQPGEPLRGEVDSNPVSRQIVDVARGLEGIVRNSSIHAAAVVIADRPLTDI 527

Query: 543  VPMY-----RDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-G 593
            VP+       D R D     VTQ++MK +E+ GL+K DFLGL+ L +++ +LD + +  G
Sbjct: 528  VPLQLADAGTDDRGDKVYRTVTQYSMKPVEELGLLKMDFLGLRNLDVIEDALDIIERSTG 587

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             + D++ +P DD +TY ++    ++G+FQ ES GMR+ L+ ++P  +ED+IAL +LYRPG
Sbjct: 588  TRPDMTTLPLDDGKTYDMIARGDSVGVFQFESEGMRETLKKVRPTELEDLIALNALYRPG 647

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             +D I  Y   K   E I      + P+L+ T GVI+YQEQ MQIA+ L+G+S ++AD L
Sbjct: 648  AMDQIPTYARGKRNPESISYPDERLRPILESTNGVIVYQEQAMQIAKSLAGFSGAKADDL 707

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+A+GKK +  M + K  FI G   +  S+ +   ++    K ADY FNK+HAA YA+I+
Sbjct: 708  RKAIGKKNRAAMAELKPEFIEGCRASRTSEQVIEWLWATNEKSADYSFNKAHAACYALIA 767

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y+TAW+K ++P E++AA ++  MD  +K+  F     Q  I+I+PP VN    DF V D 
Sbjct: 768  YRTAWLKANHPAEYMAALISSVMDTKDKVPFFVAQTEQMGIEILPPDVNESDHDFMVVDG 827

Query: 834  RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + L A+KGVG      I  A   D PF SL DFC RVD K +N++ +E+L+  GA  
Sbjct: 828  NIRFGLDAVKGVGYAAVEGIKRAREEDGPFTSLWDFCERVDGKAVNKKAIEALIKCGAFS 887

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSV 950
              G SR  +L  L+  Q   Q  +++      +IF    E G  +        +  +  +
Sbjct: 888  STGASRKGMLGVLEQAQAAGQKAQQDALIGQGSIFDLGPEPGAANGAAASAFAAPSHPGI 947

Query: 951  RFEN---------EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
              E          E+  +G + S HPL   +  +R        E      G+ + +  ++
Sbjct: 948  PAEEFDQAEMLAAEKESIGLFISAHPLKAVREAMRVKVDCTLAELSDRKDGDWVTVGGII 1007

Query: 1002 VSKQQKKTRKGSRIGWVTFSE 1022
               ++ +T++G  + + T  +
Sbjct: 1008 TQCKRLRTKRGDHMMFATLDD 1028


>gi|145219820|ref|YP_001130529.1| DNA polymerase III, alpha subunit [Prosthecochloris vibrioformis DSM
            265]
 gi|145205984|gb|ABP37027.1| DNA polymerase III, alpha subunit [Chlorobium phaeovibrioides DSM
            265]
          Length = 1187

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 374/1053 (35%), Positives = 569/1053 (54%), Gaps = 62/1053 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YS+    +    + +  A     +IA+TD   +F+  E   +A  +GI+ I
Sbjct: 3    FVHLHAHTHYSMQSSPVFPGQLFEAAAKLGMQSIAVTDYGAIFNMPELFSEAEKSGIRLI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  I +++     +   TP     S++LLV    GY+ L  L+SR            
Sbjct: 63   IGSE--ILLRETSHHQDGRNTP---ASSLILLVQNDTGYRNLCILLSRAARDGFVDGMPH 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +  S  +E    GL+ L+G SSG I R+    +   A +  + ++ +FGDR Y+ LQRH 
Sbjct: 118  LERSLFREFHG-GLVCLSGYSSGRIGRSLLAGAVDDAREHAVFYRDIFGDRFYLELQRHN 176

Query: 191  G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRV 248
              +D    S  + LA    + +VATNN  +L  +D + +  + A+ A   + SQ      
Sbjct: 177  SHFDDELNSSTIALAEECGVGVVATNNIHYLERKDSDCYRAMAALKAKQKLSSQNLSALP 236

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +H+LK+ +EM  +F D    L NTV IA  CSF+ +   PILP F   E      +E 
Sbjct: 237  GSEHFLKSPAEMRELFGDGHGELSNTVFIAESCSFVFREKEPILPHFPLPEG---FADEA 293

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR+    G + +   G        ++ R R++ EL VI +M FS YFLIV+D I  ++
Sbjct: 294  AYLRHLTAEGAKEKYP-GISEDEPSQEEVRDRIELELGVIEKMGFSSYFLIVSDLIAASR 352

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +    VGPGRGS AGS+ AY   IT IDPLR+ LLFERFLNP+R+SMPD DIDF    + 
Sbjct: 353  RLGYSVGPGRGSAAGSIVAYLTGITRIDPLRYKLLFERFLNPERLSMPDIDIDFTPVGKQ 412

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +V+ Y   +YG E VA+++  G+L AKAA+RD  R L +P S  D+L KL+P  P   ++
Sbjct: 413  KVLDYTVERYGAESVAKVVAIGTLGAKAAIRDAARVLDVPLSVADQLAKLVPQRPG--IT 470

Query: 489  LQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L+ A+++    +E   A P    L+  +  LEG  R+ S HA  +VI   PL + VP+Y 
Sbjct: 471  LETALSEVRELKEQAEATPQNRELMTYASALEGRARNVSVHAGAVVITGGPLEEQVPLYV 530

Query: 548  DVRSDLP---------------------------VTQFNMKWIEKAGLIKFDFLGLKTLT 580
              R +                             +TQF+  WIE AGL+K D+LGL+TL 
Sbjct: 531  SNRIETEARVSLDAIAPEAPQPGKHADPSAGKQVITQFDKNWIETAGLLKIDYLGLETLA 590

Query: 581  LLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++ ++L  + +R  V++DL  +P  D +T+ +       GIFQ ESSGM+  +  +QP  
Sbjct: 591  VIDETLQLIRRRHNVEIDLEKVPMTDRKTFRIFQEGKMAGIFQFESSGMQSYMTRLQPTQ 650

Query: 640  IEDIIALVSLYRPGPID-------NIV-VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            I DIIA+ +LYRPG ++       N V ++ +RK+G+E I  +HP+++ +LKET GVI+Y
Sbjct: 651  IGDIIAMSALYRPGALNARIDEKRNAVDLFVDRKHGREVIDYMHPMLETILKETYGVIVY 710

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQI+Q++ G+SL++AD LR+AMGKK  E M++ K  F+ GA   G+  T+A  +FE
Sbjct: 711  QEQVMQISQVMGGFSLAKADNLRKAMGKKKPEIMERFKVDFVQGAVAQGVHDTLATRVFE 770

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            L+A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A +  E+ + E++K    +AR 
Sbjct: 771  LMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFMTAILNSEIGDTERMKHLTDEARS 830

Query: 812  FNIQIMPPSVNTPCVDFKVGDN----RIYYSLAAIKGV-GTTTARHIMEASADKPFDSLE 866
            F I  +PPS+N     F V ++     I   L+AIK V G   A         + F +L 
Sbjct: 831  FGIATLPPSINRSDAIFSVEESPDGAAIRVGLSAIKQVGGAAKAIIAARLRRKREFLNLF 890

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            D  + VD + +NR+ LE L+ AGA D     R +L+ ++D   K+ Q   ++        
Sbjct: 891  DLTASVDQRVMNRKALECLILAGAFDEIDSHRARLIANIDKAIKFGQIENRSAALGQCGF 950

Query: 927  FAHEKGTFSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG-IKG 982
            F  E+G   +      +E         + ++E+R++GFY S HPL  ++   +    +  
Sbjct: 951  FTAEEGAVQEDGHYPDMENALQMPEQEKLQHEKRLVGFYLSRHPLSPWRRDWQAFASLHL 1010

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
             E  V   R    R+  +VVS +  + RKG ++
Sbjct: 1011 NERDVVAQR--QYRIIGLVVSTKPYQDRKGKQM 1041


>gi|289705613|ref|ZP_06502003.1| DNA polymerase III subunit alpha [Micrococcus luteus SK58]
 gi|289557663|gb|EFD50964.1| DNA polymerase III subunit alpha [Micrococcus luteus SK58]
          Length = 1198

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 369/1013 (36%), Positives = 549/1013 (54%), Gaps = 68/1013 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL  H+ YS+L+GA  L+++  +       ++AITD   LF A +F  KA AAG
Sbjct: 13   KDGGFVHLHTHTEYSMLDGAAKLDDLFAEAQRLGMDSLAITDHGYLFGAYDFWSKAKAAG 72

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFP-------------TVPSIVLLVSTAEGYQRLI 113
            ++PIIG +  +    +   T++ KT +                  + LL  T EG   L 
Sbjct: 73   VKPIIGLEAYV-APGHQHRTDKEKTRWGEPHQRGDDVSGGGAYTHMTLLSETTEGMHNLF 131

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             + S   L     +  R+    L +  ++GLI  TG  SG +         + A +    
Sbjct: 132  RMGSIASLDSVYAKWPRLDRELLSQY-SKGLIATTGCPSGEVQTRLRLGQYREAMQAASD 190

Query: 174  FKKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            F+ +FG   Y     H G D  R   + + +LA    LP VATN+  +  E D +AH+ L
Sbjct: 191  FRDIFGKDNYYCEVMHHGLDIERRVVTDLRRLAKDLGLPFVATNDLHYTHEHDAKAHEAL 250

Query: 232  MAVAHSTVVSQKDRPR-------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
            +A+   + +++    +          ++YLK+  +M  +F++LPEA +NT+ IA RC   
Sbjct: 251  LALQSGSKLNEPSYDQGGSRFAFSGTEYYLKSPRQMRELFAELPEACDNTLLIAERCEVE 310

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                A  +P F   E +D    E + L  +  +GL  R   G           R++ D+E
Sbjct: 311  FDTKANYMPVFPTPEGED----ETSWLIKEVASGLAYRYPDGV------PDHVRKQADYE 360

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L+VI  M F GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYAL ITD+DPL+  L+F
Sbjct: 361  LDVIISMGFPGYFLVVADFINWAKENGIRVGPGRGSGAGSMVAYALRITDLDPLKHGLIF 420

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNPDR+SMPDFD+DF   RR EVI YV  KYG ERV  I+T+G+++ K AL+D  R 
Sbjct: 421  ERFLNPDRVSMPDFDVDFDDRRRSEVIDYVTRKYGDERVTMIVTYGTIKTKQALKDSARV 480

Query: 465  LQMPYSQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            +  P+S  + L K +P              DPA P   +A    + FRE    DP    +
Sbjct: 481  MDQPFSMGESLTKALPPAVMAKDIPLKDIEDPAAPRYGEA----APFRELVATDPVAKEV 536

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
             E ++ LEGL R    HAAG+++   P+  ++P+ R ++    +TQF+    E  GLIK 
Sbjct: 537  FETAKGLEGLKRQWGVHAAGVIMSSAPVIDVIPIMRRLQDGQVITQFDYPMAESLGLIKM 596

Query: 572  DFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            DFLGL+ LT++  +++ + A +GV +DL  +  DD   Y LL    TLG+FQL+   MR 
Sbjct: 597  DFLGLRNLTIISDAIENVKANQGVDLDLETLDVDDPAAYELLARGDTLGVFQLDGGPMRS 656

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE---- 684
             L+ M+PD  EDI A ++LYRPGP+  ++   Y  RKNG+++I  IHP ++  L+E    
Sbjct: 657  LLKMMRPDNFEDISATIALYRPGPMGANSHTNYALRKNGQQEITPIHPELEEPLREILDT 716

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+I+YQEQVM IAQ ++GYSL +AD+LRRAMGKK K E+DKQ E F  G    G S+ 
Sbjct: 717  TYGLIVYQEQVMAIAQKVAGYSLGQADILRRAMGKKKKSELDKQYEAFHQGMLDRGYSEA 776

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
                ++++L  F+DY FNK+H+AAY ++SY TA++K HYP E++AA +T   D+ +K+  
Sbjct: 777  AVKALWDILLPFSDYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLAM 836

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFD 863
            +  + R   I ++PP VN   + F      I + + A++ VG    + +++   D   + 
Sbjct: 837  YLNECRHMGITVLPPDVNESHLTFTPVGRDIRFGMGAVRNVGANVVKGMVQGREDGGSYT 896

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
               DF ++V     N+R +ES++ AGA D  GY+R  LL   +     A   +K + +  
Sbjct: 897  GFGDFLAKVPLVVCNKRTIESMIKAGAFDSLGYARRALLAVHEEAVD-ATVAQKRKEDHG 955

Query: 924  E---NIFA-----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
            E   ++FA      +    +D + +          +   E+ +LG Y S HPL
Sbjct: 956  EFTFDLFALGGNDEDDSDAADGVAVPDLPEWAKKEKLAFEREMLGLYVSDHPL 1008


>gi|331005660|ref|ZP_08329027.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC1989]
 gi|330420518|gb|EGG94817.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC1989]
          Length = 1241

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 321/732 (43%), Positives = 448/732 (61%), Gaps = 38/732 (5%)

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
            Q Y  RL FEL++I +M F GYFLIV DFIQWAK  +IPVGPGRGSGAGS+ AYA  ITD
Sbjct: 369  QPYLDRLRFELDIIMQMGFPGYFLIVMDFIQWAKDQDIPVGPGRGSGAGSLVAYAQKITD 428

Query: 395  IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
            +DPL + LLFERFLNP+R+SMPDFDIDFC D RD+VI+YV + YG + V+QIITFG++ A
Sbjct: 429  LDPLEYDLLFERFLNPERVSMPDFDIDFCMDNRDQVIKYVSDTYGKDAVSQIITFGTMAA 488

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLE 513
            KA +RDV R     Y   D+L K+IP D    ++LQ A   +   RE    D     + E
Sbjct: 489  KAVVRDVARVQGKSYGLADKLSKMIPMDVG--ITLQKAFDQEEPLREFLDGDEEAQEIWE 546

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
            +S KLEG+ R+   HA G+VI    L+   P++ D      VTQ++   +E AGL+KFDF
Sbjct: 547  MSLKLEGITRNVGKHAGGVVIAPTKLTDFSPLFCDETGKGLVTQYDKNDVESAGLVKFDF 606

Query: 574  LGLKTLTLLQKSLDFL---------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            LGL+TLT++  ++  +         A     +D++ IP DD  TY +L T  T  +FQLE
Sbjct: 607  LGLRTLTIIDWAVKMINATRKKAAGANSHQVLDIAFIPLDDPATYRMLKTAETTAVFQLE 666

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSI-----HPL 677
            S GM+  ++ +QPD IED+ ALV+L+RPGP+ + +V  + NRK+G+ ++        H  
Sbjct: 667  SRGMKDLIKRLQPDDIEDLTALVALFRPGPLQSGMVDDFINRKHGRAEVAYPDAKYQHDK 726

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            + P+L  T GVI+YQEQVMQIAQ L+GY+L  AD+LRRAMGKK  EEM KQ+  F  GA 
Sbjct: 727  LKPILGPTYGVIVYQEQVMQIAQELAGYTLGGADMLRRAMGKKKPEEMAKQRAVFEGGAK 786

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
              GI  T+A+ IF+L+ KFA YGFNKSH+AAYAV+SYQTAW+KTHYP +F+AA+M+ +MD
Sbjct: 787  DQGIDPTLAIKIFDLVEKFAGYGFNKSHSAAYAVVSYQTAWLKTHYPAQFMAATMSSDMD 846

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856
              EK+  F ++ R   + ++PP VN     F V  DN I Y L AIKG+G     +I+EA
Sbjct: 847  KTEKVVIFVEECRSMKLNLLPPDVNQGDFQFTVDIDNNIIYGLGAIKGLGEGPVENIIEA 906

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-----------YSRMQLLQSL 905
                PF +L DFCSRVD++K+N+R L++LV +G+ D  G            +R  LL +L
Sbjct: 907  RKSGPFKNLFDFCSRVDARKVNKRALDALVRSGSFDTIGPDGDNPERDLDMTRAILLAAL 966

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHE---KGTFSDKITLEKFSVENSSV--RFENEQRVLG 960
                K A     N+     ++F      +G  ++      +     ++  R   E   +G
Sbjct: 967  PEAVKTADQALANQNAGMVDLFGDSLLGQGDENEDPYESFYRTRRWTMKERLNGENDTIG 1026

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             Y +GHP+D Y+  ++ +        VA  +   I++A +VV+ +  KT++G  +G++T 
Sbjct: 1027 LYLTGHPIDEYEDEVKHLVSSRISRIVADRK--TIKIAGLVVAMRVMKTKRGDTMGFITL 1084

Query: 1021 SEPAKEYEANFF 1032
             +     E   F
Sbjct: 1085 DDRTARMEVAVF 1096



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 98/287 (34%), Positives = 151/287 (52%), Gaps = 10/287 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL++H+ +SL++G + +  ++ K+A    PA+A++D  N +  ++F   A  AG++PI
Sbjct: 11  FVHLRLHTEFSLVDGTVRIKPLVAKVAEMGMPAVAVSDVCNFYGLIKFYTAAQNAGVKPI 70

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG   D  M+ +    N  K   PT+  I L      GY+ +I L+SR +   Q      
Sbjct: 71  IGA--DFWMRTSGDKENSDK---PTL--ISLYAMNHVGYRNIILLISRAFQEGQYHGDPY 123

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
           I   W+ E  +EG+I L+GG  G I  A   +    A   L  +K  F DR Y+ LQR  
Sbjct: 124 ILREWISEC-SEGVIALSGGRQGDIGVALLSDHRDEAMAYLEGWKADFPDRFYLELQRTG 182

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
           R  +       V LA   ++P+VATN+  FL   D+EAH+  + +     +    R  R 
Sbjct: 183 RENEEDYLHAAVALASEQQIPVVATNDVRFLVGSDFEAHESRVCIGEGRTLDDPRREHRY 242

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
           +   YL+   EM  +FSD+P+AL NTVEIA+RC+  +++    LP F
Sbjct: 243 SDQQYLRTPEEMAELFSDIPQALANTVEIAKRCTVDIELGNYYLPDF 289


>gi|307571155|emb|CAR84334.1| dnaE [Listeria monocytogenes L99]
          Length = 1095

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 363/1021 (35%), Positives = 581/1021 (56%), Gaps = 49/1021 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PIIG  + + +Q 
Sbjct: 1    MLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPIIG--MTVTIQG 58

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
             L   N  +        ++L+  +  GY  L+++ S +   ++G +   +  SWL+   +
Sbjct: 59   YLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE---LPQSWLRAYSS 107

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYDRYRESQV 200
              LI ++ G+ G I+R     +   A +       +FG + +Y++ Q+    +    +++
Sbjct: 108  -NLIAISPGAKGEIERLLMEENRDGALEAYANLVDIFGKESVYLSAQKE---NPRLFAKI 163

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
               +    +P+VAT N  +L  +D +A +VL A+  +  V     P   P+ Y  ++ EM
Sbjct: 164  ETFSAEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAGPN-YFTSQEEM 222

Query: 261  VSIF-SDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
               + +D   +A   T E+A RC   + +   +LPRF   E  +      + LR  A  G
Sbjct: 223  ERDWQTDFEKQACFETGELADRCHVEIALDQHLLPRFPLTEGQN----APDVLRQTAYDG 278

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            L+ R   GA        +Y++RL++EL VI  M F+ YFLIV D I+++++  +  GPGR
Sbjct: 279  LKERDLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSREAGVLTGPGR 330

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRDEVI YV +KY
Sbjct: 331  GSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRDEVISYVVSKY 390

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSR 497
            G   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     ++LQ A+ +  R
Sbjct: 391  GEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--ITLQKALQESPR 448

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
                  +    + + E++ +LEGL RH STHAAGIVI D+PL + V +      D  +TQ
Sbjct: 449  LENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG-SGDARLTQ 507

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKG 616
            F M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D +T  L  T  
Sbjct: 508  FAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNRETPLTLADISLEDKKTLKLFQTGD 567

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK+GKEKI   HP
Sbjct: 568  TTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHGKEKIQYPHP 627

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
             + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA
Sbjct: 628  DLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGA 687

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
               G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++   
Sbjct: 688  KSKGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVF 747

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIME 855
             N +KI ++  +A+ + I ++ PS+N     F+V  ++ I YS   I+ V T     I+ 
Sbjct: 748  GNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVPTKFILEIIN 807

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
                 PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   +
Sbjct: 808  ERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLL 867

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYKP 973
             ++  +K  N+FA E   F  K+          S+  + E E+   G Y S HP+  Y+ 
Sbjct: 868  GED--SKGMNLFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQN 924

Query: 974  ILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             L+ + I      +A +  G N ++AA V   +  +T+KG  + ++T S+ +KE  A  F
Sbjct: 925  KLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMF 980

Query: 1033 P 1033
            P
Sbjct: 981  P 981


>gi|149198162|ref|ZP_01875209.1| DNA polymerase III, alpha subunit [Lentisphaera araneosa HTCC2155]
 gi|149138764|gb|EDM27170.1| DNA polymerase III, alpha subunit [Lentisphaera araneosa HTCC2155]
          Length = 1223

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 353/1011 (34%), Positives = 567/1011 (56%), Gaps = 48/1011 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L+ A ++  ++ ++      A A+TD  N+  ++ F+     A I+PI+GC   ++   
Sbjct: 1    MLQSACTMPALIKRLEEGGFEAAALTDFANMCGSIAFTNGLKKANIKPILGCYTYLN--- 57

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q  +   +   ++LL     GYQ L ++ ++ +L +      RI  S+L++  +
Sbjct: 58   --NSRTQNPSNMSSFNGLILLAKNNVGYQNLCKINAQSHL-ESFHIKPRIDRSFLRQY-S 113

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-KLFG-DRLYVNLQRH-RGYDRYRES 198
            EG+I +       I       S  +     L F   +FG +  Y+ +Q+H R  D  +  
Sbjct: 114  EGIIAIAPFHDSDIASDL---SKNIDPTNALNFYVDIFGKENFYLEIQKHKREGDDEKYP 170

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
             V+QLA  +E+ LVA+    +   +    HD++  V   TV   +       ++YL    
Sbjct: 171  LVLQLAKDNEIGLVASQTVYYPEAKMAIPHDIVCCVGEKTVHDPQKLRFPEKNYYLHLPE 230

Query: 259  EMVSIFSDLPEALENTVEIARRC--SFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
            EM  +FSD+PEALENT +IA +C  +F    H P+ P       DD  + ++  L    V
Sbjct: 231  EMEGLFSDVPEALENTRKIANQCDVAFDTSEHYPVYPM-----SDD--RTQQQFLLEICV 283

Query: 317  AGLEVRLA-QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
             GL+ R        K    ++  +R DFEL VI +  +  YFL+V DFI W+K N+IPVG
Sbjct: 284  GGLKERYGLDHKNPKDQREKEIVERTDFELGVIHKSGYDSYFLVVWDFINWSKTNDIPVG 343

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
            PGRGSGAGS+ AY   IT+IDP++++LLFERFLNP+R+S PDFDIDFC+ RR EVI YV+
Sbjct: 344  PGRGSGAGSIVAYLTGITNIDPIKYNLLFERFLNPERISPPDFDIDFCERRRPEVIDYVR 403

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
             KYG E+VAQI T+G+++AKA ++DV RAL   +++ D++ KLIP D    ++L     D
Sbjct: 404  KKYGSEKVAQIGTYGTMKAKAVIKDVTRALGYEHTRADQITKLIPEDLK--ITLHKALFD 461

Query: 496  SRFREARL-----ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
             + +   L     ++  V ++++ +  LEGL R+   HA G++IGD+ L+ L+P+     
Sbjct: 462  PKIKSEELIALNDSEEWVKQIIDNAMPLEGLNRNMGIHACGVIIGDQELTNLIPLISGAN 521

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
             ++ VTQF+    E  GL+K DFLGL+TLTL++ +L  + +   +++D+  IP DD  TY
Sbjct: 522  GEV-VTQFSAGPCEDLGLLKMDFLGLRTLTLIKDTLGLIKENHDIEIDIEAIPIDDRRTY 580

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  +FQ ES+GM++ ++ +QP    D+IA+ +LYRPGPI  I  +  RK+G+E
Sbjct: 581  KLFQEGKTTAVFQYESAGMQKYMKELQPTVFPDLIAMNALYRPGPIAYIPSFIERKHGRE 640

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +I      +D  L+ET G+ +YQEQVM ++Q L  ++  EAD LR+AMGKK  + + + K
Sbjct: 641  EITYDCEGMDEYLQETYGITVYQEQVMLLSQKLGNFTKGEADTLRKAMGKKKMDLLAQLK 700

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +F+     NG  +      +E    FA Y FNKSH+  YA ++YQTA++K HYP EF+A
Sbjct: 701  PKFLDQGEGNGHDRKKLEETWEKWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEFMA 760

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A MT E+ N +K+  F ++ R   ++++PP++N   V F V +  I ++L AIKGVGT+ 
Sbjct: 761  AVMTSELGNADKVTFFLEECRNLGLKVLPPNINKSKVTFSVENGAIRFALGAIKGVGTSA 820

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            +  I+    +  ++S  + C RV    ++R+VLE ++ +G +D FG  R  L Q +D   
Sbjct: 821  SETIVRIRKEGEYESFMNLCERVGHTNVSRKVLEGIIASGGMDEFGNKRSALTQFIDRAL 880

Query: 910  KYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +++     +      ++FA   E  T S   ++ ++ +     + + E+ +LGFY +GHP
Sbjct: 881  EHSSSKANDLAMGQMSLFAEVEEVNTISPDDSMPEWDLR---YKLDMEKTLLGFYATGHP 937

Query: 968  LDVYKPILRKM------GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            +  +K +++K       G+K   E  A       RL  M+ +   +KT+KG
Sbjct: 938  VGEHKQLIKKFSSNSITGLKKQSEDRAV-----ARLGVMISNLNLRKTKKG 983


>gi|326333480|ref|ZP_08199722.1| DNA polymerase III, alpha subunit [Nocardioidaceae bacterium Broad-1]
 gi|325948725|gb|EGD40823.1| DNA polymerase III, alpha subunit [Nocardioidaceae bacterium Broad-1]
          Length = 1194

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 382/1080 (35%), Positives = 578/1080 (53%), Gaps = 73/1080 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA  L+ +  + +  + PAIA+TD  N+  A +F +KA A  ++P
Sbjct: 8    SFVHLHVHTEYSMLDGASLLDGLFKRTSELEMPAIAMTDHGNMHGAYDFWKKAKAHDVKP 67

Query: 70   IIGCQLDIDM---QDNLKMTNQGK-----------TPFPTVPSIVLLVSTAEGYQRLIEL 115
            IIG +  I     +   K    GK           +       + +     EG   L  L
Sbjct: 68   IIGIEAYITPNTPRSERKRVRWGKGDAAQEGGDDVSGGGAYTHMTMWAENTEGMHNLFRL 127

Query: 116  VSRMYLLDQGKQ-SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
             SR  L  +G     R+    L E  ++G+I+ TG  SG I         + A K     
Sbjct: 128  SSRSSL--EGYYFKPRMDKEILAE-HSKGIIVSTGCPSGAIQTRLRLGQWEEALKEAGEL 184

Query: 175  KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG D +++ L  H    ++     +++L  T  +  VATN+S + + ED  AH+ L+
Sbjct: 185  QDIFGKDNVFLELMDHGISIEKRVRDDLLKLGKTMGIRPVATNDSHYNNPEDAGAHEALL 244

Query: 233  AVAHSTVVSQ----KDRPRVT---PDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSF 283
             V   + +++    K   R       +Y+K+ +EM  ++   DL +A +NT+ IA RC  
Sbjct: 245  CVQSGSRMTEPPYSKGGKRFAFEGSGYYIKSAAEMRELWGRQDLIDACDNTLLIAERCDV 304

Query: 284  -ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
               +     + R    E +     EE+ LR +   G+E+R     +      Q+ + R++
Sbjct: 305  EFTESTGGYMARADIPEGE----TEESWLRKETWRGIELRYPGEKLT-----QEVKDRVE 355

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            FE++VI +  + GYFL+VADFIQW+K N I +GPGRGSGAGS+ AYAL ITD+DPL   L
Sbjct: 356  FEIDVILQKGYPGYFLVVADFIQWSKNNGIRIGPGRGSGAGSIVAYALKITDLDPLEHGL 415

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FERFLNP+R SMPDFDIDF   RR E I+YV  KYG E+VAQI TFG ++AK A++D  
Sbjct: 416  FFERFLNPERPSMPDFDIDFDDHRRGETIKYVTEKYGAEKVAQIATFGRIKAKQAIKDAA 475

Query: 463  RALQMPYSQVDRLCKLIPNDP-AHPVSLQAI--------ADDSRFREARLADPSVDRLLE 513
            R L   ++  DR+ K +P D     V L+ +         +   FR     DP V ++ E
Sbjct: 476  RILDHGFAIGDRITKALPPDVMGKGVPLKELFNPDHKRYGEGGDFRALHDTDPDVRKIYE 535

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             +  LEG  R    HAAG+++   P+  +VP+    +    VTQF     E  GL+K DF
Sbjct: 536  TALGLEGQIRQTGIHAAGVIMASEPIIDIVPLMEPKQDGQVVTQFEYPTCEALGLVKMDF 595

Query: 574  LGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL  L  L+ +LD + A R + + L  +PFDD  TY L+    TLG+FQL+  GMR  L
Sbjct: 596  LGLSNLHTLEDALDNIRANRDIDLVLEEVPFDDKPTYELMQRGDTLGVFQLDGGGMRALL 655

Query: 633  EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQ 686
              M PD   DI A+ +LYRPGP+  D+   Y +RKNG+E IV IHP L +P+   L ET 
Sbjct: 656  RSMLPDRFADITAVSALYRPGPMGADSHNKYAHRKNGREPIVPIHPELEEPLAEVLGETY 715

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+I+YQEQVM IAQ+L+G+SL +AD LRRAMGKK K E+DKQ   F +G  + G S++  
Sbjct: 716  GLIVYQEQVMSIAQVLAGFSLGQADNLRRAMGKKKKAELDKQYAGFQAGMLERGYSQSAI 775

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              I+E+L  F+DY FNKSH+AAY V++Y TA++K +YP E++AA +T   ++ +K+  + 
Sbjct: 776  DTIWEILLPFSDYAFNKSHSAAYGVVTYWTAYLKANYPTEYMAALLTSVKNDKDKMAIYL 835

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSL 865
             + R+  I ++PP VN    DF      I + L A++ VG      I+EA   K  F+  
Sbjct: 836  NECRRMKIAVLPPDVNESSHDFTAVGTDIRFGLTAVRNVGAQVVDGIVEARTSKGRFEDF 895

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN-IQKYAQWVEKNRTNKHE 924
             DF ++V  +  N+RV+ESL+ AGA D   + R  L+   +  + +Y   +++N     +
Sbjct: 896  NDFLAKVPDRVCNKRVIESLIKAGAFDDMKHLRRSLVAIHETAVDQYVD-IKRNEAIGQD 954

Query: 925  NIFA----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
            ++F      +   F   + + +    +      +E+ +LG Y S HPL   + +L     
Sbjct: 955  SLFGGLDDGDGVEFGVSVAIPEMDEWDKMTLLGHEREMLGLYVSDHPLMGLEHVL----A 1010

Query: 981  KGYEESVATI-------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G + ++  +         + + ++ +V +  ++ T+KG     VT  +     E   FP
Sbjct: 1011 NGTDCTIGQLMTDESRPHNSTVTVSGLVTNVNRRITKKGDAWATVTLEDLEGSVEVLLFP 1070


>gi|146299070|ref|YP_001193661.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
 gi|146153488|gb|ABQ04342.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
          Length = 1510

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 363/1081 (33%), Positives = 574/1081 (53%), Gaps = 83/1081 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-----SQK 61
            K+  F HL  H+ +S+L+  + + NI+   A +  PA+A+TDT N+  A  F     +  
Sbjct: 257  KAAKFAHLHNHTQFSVLQSTIGIGNIVAATAKNGMPAVAMTDTGNMMGAFHFVSAVMNHN 316

Query: 62   ACAAG----------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
              A+G                I+PI+GC+ +I  +++L      K+       +VLL   
Sbjct: 317  KAASGKNKALVEAGEEPTETEIKPIVGCEFNI-CENHLD-----KSKKDNGYQVVLLAKN 370

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
              GY  L ++ S  Y   +G   V      + E     +++L+G   G I          
Sbjct: 371  KAGYHNLAKMASIAYT--EGFYYVPRIDKNIVEKYKGDIMVLSGNLYGEIPSKILNIGEN 428

Query: 166  VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEED 224
             AE+ L+ +K+ FG+  Y+ + RH   D  R ++ +++ +  H + L+ATNN+ +L++ED
Sbjct: 429  QAEEALIWWKEQFGEDFYLEVMRHNQEDENRVNKTLIEFSQKHNVKLIATNNTYYLNKED 488

Query: 225  YEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEI 277
              AHD+L+ V      +T + +    R      ++Y K+ +EM  +F+DLPEA+ N  E+
Sbjct: 489  ANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSEAEMKKLFADLPEAIINIQEV 548

Query: 278  ARRCSFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
              +          +LP+F         E E D   + E   LR+  + G + R       
Sbjct: 549  IDKVEGYSLYRDVLLPKFEIPDEFMVPEDEEDGGVRGENKYLRHLTMEGAKRRY------ 602

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
             G   +  ++RLDFEL  I+   + GYFLIV DFI  A+K ++ VGPGRGS AGS  AY 
Sbjct: 603  -GEITESIQERLDFELMTISNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAAGSAVAYC 661

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L IT+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV NKYG ++VAQIIT+
Sbjct: 662  LGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGQKQVAQIITY 721

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS--RFREARLADP- 506
            G +  K+A+RD  R L +P  + DR+ KLIP       +L     +S    ++A  +D  
Sbjct: 722  GKMATKSAIRDTARVLDLPLFEADRIAKLIPGMMPSKWNLARFISESEEEVKKALRSDEF 781

Query: 507  -SVDRLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
             +V  L+ I+ +             LEG  R+   HA G++I    ++  VP+     SD
Sbjct: 782  DNVKELIAIANEDDLAGETIQQAKILEGSMRNTGIHACGVIITPSDITNYVPVTTAKDSD 841

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611
            L VTQF+    E AGL+K DFLGLKTLTL++ ++  +  R G+ +D    P DD ETY L
Sbjct: 842  LYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIDLDPDNFPIDDEETYAL 901

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                 T+GIFQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RKNG E+I
Sbjct: 902  FQRGETVGIFQYESPGMQKYMKDLKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGDEEI 961

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
                      L ET G+ +YQEQVM ++Q L+G++  EADVLR+AMGKK K+ +DK K +
Sbjct: 962  KYDLDACAEYLSETYGITVYQEQVMLLSQSLAGFTKGEADVLRKAMGKKQKDVLDKMKPK 1021

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            F+  A++ G    I   I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA 
Sbjct: 1022 FVEQAAQKGHDAKILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAV 1081

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTA 850
            ++  M++++++  F ++ ++  +Q++ P VN     F V D+  + + + AIKGVG+   
Sbjct: 1082 LSNNMNDIKQVSFFMEECKRMGLQVLGPDVNESYYKFTVNDDYAVRFGMGAIKGVGSGAV 1141

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS----- 904
              I+E   D  + S+ D   R+D +  N++ +E+L  AG  D F G +R Q         
Sbjct: 1142 ETIVENRKDGRYKSIFDLAKRIDLRAANKKAIENLALAGGFDSFEGTTRAQYFHDDGDGI 1201

Query: 905  --LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
               +   +Y    ++N  +   ++F         +  +      ++  +   E+ V+G Y
Sbjct: 1202 TFYEKAMRYGSKFQENENSSQVSLFGEASEVQIAEPVVPPCEDWSTMEKLAKEKEVVGIY 1261

Query: 963  FSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             SGHPLD ++  ++       E  +S+    G N+  A ++ + Q +  + G   GW  F
Sbjct: 1262 ISGHPLDDFRFEMKYFCNARLEALKSMNEYVGKNLNFAGIINNVQHRVAKNGK--GWAAF 1319

Query: 1021 S 1021
            +
Sbjct: 1320 N 1320


>gi|295093096|emb|CBK82187.1| DNA polymerase III catalytic subunit, DnaE type [Coprococcus sp.
           ART55/1]
          Length = 1194

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 359/988 (36%), Positives = 558/988 (56%), Gaps = 32/988 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL VH+ YSLL+GA  ++ ++ +       ++AITD   ++  +EF +     GI+PI
Sbjct: 3   FTHLHVHTGYSLLDGAAKIDGLVRRAKELGYDSLAITDHGVMYGVIEFYETCLREGIKPI 62

Query: 71  IGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           +GC++ +       +   +G   +     +VLL     GY  L ++V+R +  +      
Sbjct: 63  LGCEVYVSPGSRFDREVGKGDDRYY---HLVLLAENDLGYHNLSKIVTRGFT-EGFYYKP 118

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-VNLQR 188
           R+ +  L++   EG+I L+   +G +           A++  + ++ +FG+  Y + +Q 
Sbjct: 119 RVDMEVLEKY-HEGIIALSACLAGEVATKLRKGDYDGAKETAIRYRNIFGEENYFLEMQD 177

Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H   ++    + +++L+    +P+V TN+S ++  ED+EAHDVL+ +  +  V  ++R R
Sbjct: 178 HGIPEQATVNAGIMRLSKELGIPMVVTNDSHYIYAEDWEAHDVLLCIQTNHKVQDENRMR 237

Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 YLK++ EM  +F    EALENT +IA RC+  +      +PRF   E       
Sbjct: 238 YDGGQFYLKSKEEMAELFPYALEALENTHKIAERCNVNIVFGEQKVPRFDVPE----GYT 293

Query: 307 EENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            E  L +    G+E +        G +A+G H  + RQR+D+EL+VI  M F  YFLIV 
Sbjct: 294 AEEYLDHLVYEGMEKKYGLTYEESGKMAEGTHGYEVRQRIDYELSVIKSMGFVDYFLIVW 353

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFI +AK   I VGPGRGS  GSV AY L IT I+PL+++LLFERFLNP+R+SMPD DID
Sbjct: 354 DFIHFAKSQGIAVGPGRGSAVGSVVAYCLDITTIEPLQYNLLFERFLNPERVSMPDIDID 413

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC  RR EVI Y   KYG E V QII + ++ A+  +RDVGRA+ +PY+  D L K IP 
Sbjct: 414 FCYIRRQEVIDYCVRKYGEECVTQIIAYQTMGARNVIRDVGRAMDLPYAVCDSLAKAIPA 473

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
           +    + + A+     FR+       + +L++I++KLEGL R+A  HAAG+VIG   + +
Sbjct: 474 EKDMTIDI-ALKTSKDFRDMYEGSDEIKKLVDIARKLEGLPRNAGMHAAGVVIGREAIEE 532

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
             P+       + VTQF    +E  G++K DFLGL+T T++Q ++  + Q   K      
Sbjct: 533 YAPLSVGAEGAV-VTQFEKNTVEHLGMLKMDFLGLRTATVVQDTVKLVKQTTGKDIDIDN 591

Query: 602 PFDDHETYHLLTTKG-TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
              D      L  +G T G+FQLES GMR  +  ++P  ++D+IA V+L+RPGP+  I  
Sbjct: 592 IDYDDPNILGLMGQGKTEGMFQLESEGMRNFMMKLKPQSLDDVIAGVALFRPGPMQFIDD 651

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
           Y   K  +E +    P ++ +L+ T G IIYQEQVMQI   L+GY+L  +D++RRAM KK
Sbjct: 652 YIRGKENRELVHYDTPELEEILEPTYGCIIYQEQVMQIVMKLAGYTLGRSDLVRRAMAKK 711

Query: 721 IKEEMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
             EEM+K++  F+ G  +        NGIS+T+A  IF+ + KFA+Y FNKSH+ AYAV+
Sbjct: 712 KPEEMEKERHNFVYGNKELNVPGCVANGISETVANKIFDEMMKFAEYAFNKSHSVAYAVL 771

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
           + QTA++K +YPVEF+AA M+  +DN  K+ K+    +Q  ++++PP +N     F + +
Sbjct: 772 AAQTAYLKYYYPVEFMAALMSSVIDNNGKVAKYISVCKQMGVEVLPPDINEGVAKFSISN 831

Query: 833 NRIYYSLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +I Y L+ IK VG      I  E + + PF  L +F +R+ SK  N++ +E+L+ +GA 
Sbjct: 832 GKIRYGLSGIKSVGGAVVDRIEAERTKNGPFKDLRNFLTRMPSKDTNKKTVEALILSGAF 891

Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS-- 949
           D  G +R Q++ +L  I + A    K+R +   ++F      F     +    VE  S  
Sbjct: 892 DDMGANRKQMMMALPAIAEEAARERKSRESGQMSLFDLMGDDFVQSNLVPYPDVEEYSDQ 951

Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRK 977
            +   E+ VLG Y SGHPL  Y  ++++
Sbjct: 952 EKLALEKSVLGVYISGHPLGKYIELMQR 979


>gi|188993898|ref|YP_001928150.1| DNA polymerase III alpha subunit [Porphyromonas gingivalis ATCC
            33277]
 gi|188593578|dbj|BAG32553.1| DNA polymerase III alpha subunit [Porphyromonas gingivalis ATCC
            33277]
          Length = 1228

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 382/1116 (34%), Positives = 597/1116 (53%), Gaps = 111/1116 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------------ 58
            FVHL VHS +SLL+G  ++N+++DK  AD  P IA+TD   +F   EF            
Sbjct: 4    FVHLHVHSQFSLLDGQAAINDLVDKAIADGMPGIALTDHGAMFGIKEFYNYVEKKNSGHN 63

Query: 59   -SQKACAAGI-----------------------------------QPIIGCQLDIDMQDN 82
             + K C   +                                   +PI+GC+     +  
Sbjct: 64   ATLKDCRRELDQLNDSKSADMLTDEERNRIVKLQQKIEETKKLLFKPILGCEAYCARRTR 123

Query: 83   LKMTNQGKTPFPTVPSI-------VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
                NQ   P+    SI       +LL     GY+ LI++VS  +   Q  +  RI    
Sbjct: 124  FDKDNQIPDPYHPRRSIDASGWHLILLAKNLRGYKNLIKMVSYSWTEGQYYRP-RIDREL 182

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY--- 192
            LQ+   EG+I+ +    G I +         AE+ +L FK+LFGD  Y+ +QRH  +   
Sbjct: 183  LQKY-HEGIIVSSACLGGEIPQHIMAGEIAKAEEAILWFKELFGDDYYLEVQRHETHNPL 241

Query: 193  ---DRYRESQ-----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
               D + + Q     +++L     + ++ATN+  F +EED EAHD L+ ++    +   +
Sbjct: 242  GNQDVFPQQQRVNRVILELGKKLGVKVIATNDVHFCNEEDAEAHDRLICLSTGKDLDDPN 301

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDI 303
            R R T   ++K  +EM +IF DLPE L NT+EI  +  F    +  ++P F I  E    
Sbjct: 302  RMRYTKQEWMKTTAEMSAIFEDLPETLSNTLEILDKVEFYSIDNKALMPDFPIPPE---- 357

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             K++++ LR     G   +  +        + + ++R+DFEL  I  M F GYFLIV DF
Sbjct: 358  YKDDDDYLRFLTYEGARRKYGEDL------SDEIKERIDFELETIKGMGFPGYFLIVQDF 411

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I  A+   + VGPGRGS AGS  AY L ITDIDP+++ LLFERFLNPDR+SMPD D+DF 
Sbjct: 412  IAAARSMGVSVGPGRGSAAGSAVAYCLGITDIDPIKYHLLFERFLNPDRISMPDIDVDFD 471

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND- 482
             D R E++R+V  KYG ERVA IIT+G++  K++++DV R  ++P  + +RL KL+P+  
Sbjct: 472  DDGRAEILRWVTEKYGKERVAHIITYGTMATKSSIKDVARVQRLPLPESNRLAKLVPDKI 531

Query: 483  PAHP-VSLQ-AIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P    V+L+ AI      ++A L+   V R  L+ +Q LEG  R+   HA GI+IG   +
Sbjct: 532  PGEKKVNLKKAIEFVPELKQASLSSDKVMRDTLKYAQMLEGNVRNTGVHACGIIIGKTDI 591

Query: 540  SQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
            S +VP+     +D + +L VTQ+    IE+ GLIK DFLGLKTL++++++L  + +R G+
Sbjct: 592  SDVVPVSTAPDKDTKEELLVTQYEGSVIEQTGLIKMDFLGLKTLSIIKEALVNIKRRHGI 651

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +++  IP DD  TY L +   T+G FQ ES GM++ L  +QP   ED+IA+ +LYRPGP
Sbjct: 652  DLNIDTIPLDDPLTYKLYSDGRTIGTFQFESGGMQKYLRELQPSAFEDLIAMNALYRPGP 711

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RK+G+E I    P ++  LKET GV +YQEQVM +++ L+G++  ++D LR
Sbjct: 712  MDYIPSFIARKHGREPIDYDLPEMEEYLKETYGVTVYQEQVMLLSRKLAGFTRGQSDELR 771

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +AMGKK+ E+M+  K +F+ G +KNG  + +   I+    KFA Y FNKSHA  Y+ ++Y
Sbjct: 772  KAMGKKLIEKMNVLKVKFLEGGNKNGHPEEVLEKIWTDWEKFASYAFNKSHATCYSWVAY 831

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN- 833
            QTA++K +YP E++A +++  ++N+ +I K   + +   I ++ P VN   + F V  N 
Sbjct: 832  QTAYLKANYPAEYMAGALSRNLNNITEITKLMDECKSMKIGVLVPDVNESEMKFSVNANG 891

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + L+A+KGVG+     I+ E  A+  +  + DF  R++    NR+ +ESL  AGA D
Sbjct: 892  DIRFGLSAVKGVGSGAVEQIIAEREANGLYKDIFDFVERINLSACNRKTMESLALAGAFD 951

Query: 893  CFGYSRMQLLQS---------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
             F  SR + +           +  + +Y   V++ + ++  ++F  E+     +      
Sbjct: 952  SFALSREEYMAPPLTGREESYIQALMRYGSVVQEEKHSQSNSLFGEEEDLMIPRPQPSPT 1011

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------TIRGNNIR 996
               N   R   E+ ++G Y S +P+  Y+ IL       Y  + A       ++ G N+ 
Sbjct: 1012 EPWNDLERLNKERELVGLYLSSNPMAQYQVILDH-----YCNTHAADLTDPDSLVGKNLV 1066

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            LA +V    Q  +R  +    +T  + +   E   F
Sbjct: 1067 LAGIVTKAFQGISRSNNPYSKITLEDLSGTGEIPLF 1102


>gi|298207508|ref|YP_003715687.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus
            HTCC2559]
 gi|83850144|gb|EAP88012.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus
            HTCC2559]
          Length = 1454

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 368/1080 (34%), Positives = 579/1080 (53%), Gaps = 80/1080 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ------KAC 63
            +F HL  HS +S+L+  +S+ +++D   A+  P +A+TD  N+  A  F +      K+ 
Sbjct: 261  TFSHLHNHSQFSVLQSTMSIQDLVDNAIANNMPGVALTDHANMMGAFHFVRAVNTYNKSL 320

Query: 64   AAG-------IQPIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            A         ++ I+GC+  +  D  D  +  N  +        IV+L  T +GY  L +
Sbjct: 321  AGSEDLDKKPLKAIVGCEFQVCEDHNDKSRQDNGYQ--------IVMLAKTKKGYHNLAK 372

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            + S  Y   +G   V      + E   E +I+LTG   G +         + AE+ LL +
Sbjct: 373  MASIAYT--EGFYYVPRIDRAVVEKYKEDVIVLTGNLYGEVPSKVLNVGEKQAEESLLWW 430

Query: 175  KKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            K  F + LY+ + RH   D  R ++V ++LA  H++ +VA+NN+ + ++ D  AHD+L+ 
Sbjct: 431  KSHFEEDLYMEIMRHDQEDERRANEVLIKLAKAHDIKIVASNNTYYTAKGDANAHDILLC 490

Query: 234  VAHSTVVSQK-DRPR------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            V      S+   R R         ++Y K+  EM ++F DLPEA+ NT ++  +      
Sbjct: 491  VKDGEKQSKPIGRGRGYRYGLPNQEYYFKSNDEMKALFKDLPEAITNTQDVVNKIEGFDL 550

Query: 287  VHAPILPRF-------IEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                +LP F         K+ DD  K  EN  L++    G + R        G    + +
Sbjct: 551  ARDVLLPAFEIPEKFKDSKDLDDGGKRGENAFLKHLTYEGAKERY-------GEITPEIK 603

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RLDFEL++I +  + GYFLIV DFI+ A+  ++ VGPGRGS AGS  AY L IT+IDP+
Sbjct: 604  ERLDFELSIIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSAVAYCLKITNIDPI 663

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
            ++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV  KYG ++VAQIIT+G++ AK+A+
Sbjct: 664  KYDLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIKKYGSDQVAQIITYGTMAAKSAI 723

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD-PSVDRLLEIS-- 515
            RD GR L +P  + D++ KLIP D      +  + +    R+ R  D   V  LL IS  
Sbjct: 724  RDTGRVLDLPLHETDKIAKLIP-DMTKLGKIFGVDEKELSRKFRSEDFEGVKELLSISGG 782

Query: 516  -----------QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
                       + LEG  R+   HA G++I    +S  VP+ R    +L +TQF+   +E
Sbjct: 783  NDLQAQTVNQARVLEGSVRNTGVHACGVIITPDDISNFVPIARSKDGELYITQFDNSVVE 842

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
             AGL+K DFLGLKTLTL++ ++  + A+ GV++D    P DD +TY L     T+GIFQ 
Sbjct: 843  DAGLLKMDFLGLKTLTLIKDTVKIVKAKHGVQLDPDSFPLDDEKTYELFQRGETVGIFQY 902

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES GM++ ++ ++P   +D+IA+ +LYRPGP++ I  +  RK+G E I    P ++  LK
Sbjct: 903  ESPGMQKHMQSLKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGDEDIEYDLPAMEEYLK 962

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+ +YQEQVM ++Q L+ ++  EAD+LR+AMGKK K  +DK K +FI  AS  G   
Sbjct: 963  ETYGITVYQEQVMLLSQKLADFTKGEADILRKAMGKKQKAVLDKMKPKFIEQASAKGHDA 1022

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                 +++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA ++  M N++++ 
Sbjct: 1023 EKLEKVWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMSNIKQVT 1082

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKP 861
             F ++ R+  + ++ P VN     F V  +  I + +AAIKGVG++    I+ E   +  
Sbjct: 1083 FFMEECRRMKLDVLGPDVNESFRKFSVNKEGAIRFGMAAIKGVGSSAVESIVAERKENGH 1142

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQL-------LQSLDNIQKYAQ 913
            F S+ D   R+D +  N++  E+L  AG  D F    R Q        +  L+ + +YA 
Sbjct: 1143 FKSIFDMAKRIDLRAANKKAFENLALAGGFDSFQDTHRAQYFLDEGDGITFLEKVIRYAA 1202

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
              ++N+ +   ++F         +  +       +  +   E+ V+G Y SGHPLD Y  
Sbjct: 1203 KYQENKNSSQVSLFGEASEVQIPEPVVPPCEEWGTMEKLRKERDVVGMYISGHPLDDYNI 1262

Query: 974  ILRKM--GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             ++        Y E +  +    + LA ++   +   T+  +  GW  F+  A++Y   +
Sbjct: 1263 EMKSFCNANLNYLEDLQQVLNAELSLACILTDIRHLTTK--TNKGWAIFT--AEDYHNTY 1318


>gi|119717274|ref|YP_924239.1| DNA polymerase III subunit alpha [Nocardioides sp. JS614]
 gi|119537935|gb|ABL82552.1| DNA polymerase III, alpha subunit [Nocardioides sp. JS614]
          Length = 1183

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 385/1074 (35%), Positives = 579/1074 (53%), Gaps = 69/1074 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA  L+ +  ++A  Q PAIA+TD  NL  A +F  KA   G++P
Sbjct: 8    SFVHLHVHTEYSMLDGASLLDGLFSRVADLQMPAIAMTDHGNLHGAFDFYSKARKHGVKP 67

Query: 70   IIGCQLDI--------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            IIG +  I                 D  +              + +     EG   L  L
Sbjct: 68   IIGIEAYITPGTGRGERRRVRWGKGDAAEEGGDDVAGGGAYTHMTMWAENTEGMHNLFRL 127

Query: 116  VSRMYLLDQGK-QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
             S   L  +G     R+    LQ+  ++G+I+ TG  SG I           A +     
Sbjct: 128  SSLSSL--EGYFYKPRMDREILQQ-HSKGIIVSTGCPSGAIQTRLRLGQWDEAVREAGEL 184

Query: 175  KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG + +++ L  H    ++     +++L     +P +ATN+S + + +D +AHD L+
Sbjct: 185  QDIFGRENVFLELMDHGISIEKRVRDDLLRLGRQLGIPPLATNDSHYNNPDDADAHDALI 244

Query: 233  AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCS--FILQV 287
             VA    +S  +R +     +Y+K+ +EM  +++  DL EA +NT+ IA RC   F+   
Sbjct: 245  CVASGKRLSDTNRLKFDGGGYYIKSPAEMRQLWTQHDLVEACDNTLAIAERCEVEFVEST 304

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                   ++ +      + E++  R +   G+E R     +      Q+ + R++ EL +
Sbjct: 305  GG-----YMARADVPAGETEDSWFRKEVWRGIEARYPGDRLT-----QEVKDRVEMELAI 354

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I++  + GY+L+VADFIQW+K+N I VGPGRGSGAGS+ AYAL+ITD+ PL   L FERF
Sbjct: 355  ISQKGYCGYYLVVADFIQWSKRNGIRVGPGRGSGAGSIAAYALSITDLCPLEHGLFFERF 414

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R SMPDFDIDF   RR EVI+YV  KYG +RVAQI TFG L+AKAA++D  R L  
Sbjct: 415  LNPERPSMPDFDIDFDDHRRGEVIKYVTEKYGADRVAQIATFGRLKAKAAIKDAARVLDF 474

Query: 468  PYSQVDRLCKLIPNDP-AHPVSLQAIAD--------DSRFREARLADPSVDRLLEISQKL 518
             ++  DR+ K +P D     V+L+ I D           FR    +DP V R+ + +  L
Sbjct: 475  GFAISDRITKALPADVMGKGVALKDIFDPGHKRYGEGGEFRSLHDSDPDVRRIYDTAVGL 534

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EG  R+   HAAG+++   PL  +VP+    +    +TQF+    E  GL+K DFLGL  
Sbjct: 535  EGQIRNWGVHAAGVIMSSEPLINVVPIMARPQDGAIITQFDYPMCESLGLVKMDFLGLSN 594

Query: 579  LTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            L +L  ++ +  A RG +V L  +PFDD  TY L+    TLG+FQL+  GMR  L  MQP
Sbjct: 595  LHILDDAVANIEANRGEQVVLEELPFDDRATYELMGRGDTLGVFQLDGGGMRALLRSMQP 654

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVIIY 691
            D   DI A+ +LYRPGP+  D+   Y  RKNG+E I  IHP     ++P+L ET G+I+Y
Sbjct: 655  DQFADITAVSALYRPGPMGADSHNKYARRKNGREPIEPIHPALAEALEPVLGETYGLIVY 714

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVM IAQ+L+G++L  AD LRRAMGKK KEE+DKQ   F SG  + G  +     ++ 
Sbjct: 715  QEQVMAIAQVLAGFTLGAADNLRRAMGKKKKEELDKQYAGFQSGMLERGFPQAAIDTLWA 774

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +L  F+DY FNKSH+AAY VI+Y TA++K +YP E++AA +T   D+ +K+  +  + R+
Sbjct: 775  ILLPFSDYAFNKSHSAAYGVITYWTAYLKANYPAEYMAALLTSAKDDKDKLAIYLNECRR 834

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCS 870
              IQ++PP VN    +F    N I + L A++ VG+     I+ A  +K  ++   DF S
Sbjct: 835  MKIQVLPPDVNESAHNFTPVGNDIRFGLTAVRNVGSNVVDGIVAAREEKGRYEDFNDFLS 894

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +V ++  N+RV ESL+ AGA D   + R  L   L + +   ++V   R ++ ++     
Sbjct: 895  KVPAQVCNKRVFESLILAGAFDDMKHKRRAL--HLKHEEAVDRYVGLKREDEGQDSLFGG 952

Query: 931  KGT----FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
             G+    F   I L      +       E+ +LG Y S HPL   + +L        + S
Sbjct: 953  SGSDDVVFDVSIALPDVDEWDKMTLLSREREMLGLYVSDHPLLGLEHVL----ANSSDCS 1008

Query: 987  VATIR-------GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  +        G+++ ++ +V S Q+K T++G     VT  +     +   FP
Sbjct: 1009 IGQLMLDEDRPDGSSVTISGLVTSVQRKITKRGDAWAMVTVEDLDGAIDVLLFP 1062


>gi|225012068|ref|ZP_03702505.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium MS024-2A]
 gi|225003623|gb|EEG41596.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium MS024-2A]
          Length = 1436

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 368/1074 (34%), Positives = 580/1074 (54%), Gaps = 73/1074 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            FVHL  HS +S+L+    ++ +++  A+ + PA+AITD  NL  A  F +   A      
Sbjct: 253  FVHLHNHSQFSVLQATSRISQLVEATASYKMPAVAITDHANLMGAFHFIKAIKAHNKDLE 312

Query: 67   ----IQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
                I+PIIGC+  + D   +    + G         +V L    +GY  L ++ S  Y+
Sbjct: 313  EAQQIKPIIGCEFYVCDDHTDRSRRDDGY-------QMVFLAKNKKGYHNLAKMTSMAYV 365

Query: 122  LDQGKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
               G   V RI    +++   E LI+L+G   G +         + AE+ L  +   F +
Sbjct: 366  --NGFYYVPRIDREIVKQY-KEDLIVLSGNMYGELASKILNLGDRQAEEALQWWYSEFKE 422

Query: 181  RLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA--- 235
              Y+ L RH   G DR   + +V+LA  +++PL+ATNN+ +  +E+  AHD+L+ V    
Sbjct: 423  DFYIELMRHGEEGEDR-ANAVLVKLALQYDIPLIATNNTYYTKKEEANAHDILLCVKEGE 481

Query: 236  -HSTVVSQKDRPRVT-PDH--YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
              +T + +    R   P+H  Y K+  EM ++F+D+PEA+ N   +  +          +
Sbjct: 482  KQATPIGRGRGFRYGFPNHEYYYKSPEEMKALFADIPEAITNIGALIDKIESFDLAREVL 541

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIAR 350
            LP+F   E    Q  E+++ +      L     QGA  + G  +++ ++R+DFEL VIA+
Sbjct: 542  LPKFEIPES--YQIHEDSDGKKGENKYLHYLTYQGAEKRYGTLSEEIKERIDFELGVIAK 599

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              + GYFLIV D I  A+  ++ VGPGRGS AGSV AY L IT+IDP+++ LLFERFLNP
Sbjct: 600  TGYPGYFLIVQDLIAAARDLDVSVGPGRGSAAGSVVAYCLKITNIDPIKYDLLFERFLNP 659

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            DR+SMPD DIDF  + R +V+ YV  KYG  +VAQIIT+G++ AK+++RD  R L +P  
Sbjct: 660  DRVSMPDIDIDFDDEGRSKVMDYVIKKYGSNQVAQIITYGTMAAKSSIRDTARVLDLPLG 719

Query: 471  QVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLADPSVDRLLEISQ------------ 516
            + DR+ KL+PN     + L  +  + D   +E  L +  V R+ EI              
Sbjct: 720  EADRIAKLLPN-----IKLAKLFSSSDKELKET-LRNDEVLRVNEIKNLADEDSLSGETI 773

Query: 517  ----KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
                 LEG  R+  THA G++I    ++Q VP+     SDL VTQF+   +E AGL+K D
Sbjct: 774  QQAIVLEGSLRNTGTHACGVIITPDDITQFVPVATAKDSDLYVTQFDNSVVEDAGLLKMD 833

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLTL++ ++  +  +  + +D    P DD +TY L     T+GIFQ ES+GM++ 
Sbjct: 834  FLGLKTLTLIKDTVKLVKYKHNIDLDPDTFPLDDEKTYELFQRGDTVGIFQYESAGMQKY 893

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            L+ ++P    D+IA+ +LYRPGP++ I  + +RKNG E+I    P++   L+ET G+ +Y
Sbjct: 894  LKDLKPTVFADLIAMNALYRPGPLEYIPSFVDRKNGNEEISYDLPVMAEYLEETYGITVY 953

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVM ++Q L+G+S  +ADVLR+AMGKKI   + K K +FI G   NG  + I   I++
Sbjct: 954  QEQVMLLSQKLAGFSKGDADVLRKAMGKKIFALLQKLKPQFIEGGKNNGHPEEILEKIWK 1013

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
                FA Y FNKSH+  YA+I YQTA++K HYP E++AA ++  M +++++  F ++ R+
Sbjct: 1014 DWEAFAAYAFNKSHSTCYALIGYQTAYLKAHYPAEYMAAVLSNNMSDIKQVTFFMEECRR 1073

Query: 812  FNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
              + ++ P VN     F V D + I + + AIKGVG      I+E   D+ ++S+ D   
Sbjct: 1074 LGLNVLGPDVNESFYKFAVNDQQAIRFGMGAIKGVGKGAVDTIIEHRKDQRYESIFDLVK 1133

Query: 871  RVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVEKNRTNK 922
            R+D +  N++  E+L  AG  D F    R Q           L+ + ++    ++N  + 
Sbjct: 1134 RIDLRAANKKAFENLALAGGFDSFLNVKRAQYFNPDGDGVTFLEKVLRFGSKYQENLNSS 1193

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
              ++F  E  +    +T+       + +R + E+ V+G Y S HPLD +   +       
Sbjct: 1194 QTSLFGEETNSTYQDLTIPDCEAWTNLIRLKKEKEVVGIYISSHPLDDFTHEIEHFVTLS 1253

Query: 983  YEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF--SEPAKEYEANFF 1032
              +  ++  +      +  +V   Q  ++R G   GW  F   + + +YE   F
Sbjct: 1254 LNQLGALDQLVNREFSIGGIVNEIQHLESRNGK--GWARFIVEDFSDQYEFRIF 1305


>gi|293400488|ref|ZP_06644633.1| DNA polymerase III, alpha subunit [Erysipelotrichaceae bacterium
            5_2_54FAA]
 gi|291305514|gb|EFE46758.1| DNA polymerase III, alpha subunit [Erysipelotrichaceae bacterium
            5_2_54FAA]
          Length = 1038

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 353/1028 (34%), Positives = 577/1028 (56%), Gaps = 50/1028 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL V S Y+LL+  +++  I+D        A+A+ D   +  A+ F   A  A IQPI 
Sbjct: 14   VHLHVRSCYTLLQSTMTIQKIVDSAKRYGYHAVALCDKEVMHGAMAFYHMAKKADIQPIF 73

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-SVR 130
            G ++++  ++              +   +LL     GYQ L++L + +   ++ +Q ++ 
Sbjct: 74   GMEVEVAEEEG-------------IFGFILLAKNDNGYQALMKLSTMLNTKERKEQLTME 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              L++     T+  ++LT G    ++        +     L   K+ F    YV + R+ 
Sbjct: 121  ELLTY-----TKDCVVLTNGDQNQMETYLIKEEMEHLAAFLQRCKESFAT-FYVAISRND 174

Query: 191  G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                R +   +  L    ++P  A +   F   +  E++  L A+     +  K     +
Sbjct: 175  SPLLRQKNRLLKALCQQMQIPTTALSRIYFDEAKGEESYKTLCAINQGVSLDDK-MLNYS 233

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P  Y +++ EM  ++ +  + L  + +IA+ C   ++    ILP+F  +         E 
Sbjct: 234  PKRYFRSKEEMAELYDE--DDLAASDKIAQMCHVEMKFPKAILPKFKNR----YGMSSEE 287

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR     GLE R+    I   Y      QRL +EL+VI  M ++ YFLIV DFI++AK 
Sbjct: 288  FLRRLCHKGLEKRMQYQKIPSVY-----EQRLRYELDVIISMGYADYFLIVWDFIRFAKT 342

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             +I +GPGRGS AGS+ AY L IT  DP+R+ LLFERFLNP+R+SMPD D DF  DRRDE
Sbjct: 343  QDIYIGPGRGSAAGSLVAYCLGITHADPIRYHLLFERFLNPERVSMPDIDTDFPDDRRDE 402

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI YV + YG   V+ IITF +L AK  LRDVG+A+Q+   Q+D LCKL+PN P   V+L
Sbjct: 403  VIAYVHDLYGEHHVSHIITFNTLAAKQVLRDVGKAMQVAPRQIDLLCKLVPNRP--KVTL 460

Query: 490  Q-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            Q A  +  +F++   +   + +L  I+ +LEGL RH+S HAAGI++ +  +S + P+  D
Sbjct: 461  QDAYQERVKFKQMINSGEQMRKLFAIALQLEGLPRHSSLHAAGIILSNEDISNVCPLI-D 519

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
            V   +  TQF M+++E+ GLIK DFLGL+ LT++ + +  +  +  ++D+  IP DD +T
Sbjct: 520  VDEGMCATQFTMEYLEELGLIKMDFLGLRNLTIIDEIVHQINAKEKRLDIMHIPLDDAKT 579

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y L+ +  T+G+FQLES GM+  +  M+P C EDI+A V+L+RPGP++NI  Y   +   
Sbjct: 580  YQLIRSVDTVGVFQLESEGMKNLIRKMKPTCFEDIVATVALFRPGPMENIPRYLECRTHP 639

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EK+  +HP + P+L+ T GV+IYQEQVMQIAQ ++G+SL +AD LR+A+ KK  +E+   
Sbjct: 640  EKVDYLHPDLKPILENTYGVMIYQEQVMQIAQTMAGFSLGKADNLRKAISKKKGKELQSL 699

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F+ GA + G  +++A+ ++EL+ KFA+YGFN+SH+ AY +I+YQ A++K + P+ F 
Sbjct: 700  REDFVEGAKQKGYEESLAIRVYELIMKFANYGFNRSHSVAYGMIAYQMAYLKANAPLYFF 759

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             A +   + +  K  ++  +AR+ +I+I+ PS+N     +++  N + + L  IKG+G  
Sbjct: 760  TALLNSVIGSETKTSEYVFEARKRHIEILLPSINQSSNQYEIEGNALRFPLVGIKGIGNA 819

Query: 849  TARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             +  ++E    +  F    DF +R++ +KL ++ +E L+FAGALD F  +R  LL SLD+
Sbjct: 820  VSNVLIEERQKRGNFKDFFDFVARMEGQKLGKKTMEMLIFAGALDEFKINRSSLLASLDD 879

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +Y   V+    ++ + +F  E  +     +L+    EN++ R E E+ +LGFY S HP
Sbjct: 880  AIRYGDLVKIE--DQDQILFDFELVSKPALTSLK----ENAAQRAEREKEMLGFYLSAHP 933

Query: 968  LDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            +      LR    +G    +A      + ++   MV   +Q +T+ G  + +V  ++   
Sbjct: 934  ITA----LRDKMQQGLVPLIALTSHLHSYVKFICMVERTKQFRTKNGHLMMFVVGADETG 989

Query: 1026 EYEANFFP 1033
            +++    P
Sbjct: 990  KFDLVCMP 997


>gi|227529180|ref|ZP_03959229.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227350905|gb|EEJ41196.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 1116

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 365/1034 (35%), Positives = 569/1034 (55%), Gaps = 60/1034 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV LQV SS+SLL   + +N ++         AIA+TD N L+ A++F   A  AGI+P+
Sbjct: 3    FVPLQVKSSFSLLRSPIRINELVTTAKERGYSAIALTDKNVLYGAIDFYNAAKKAGIKPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG QL I + +N+  TN           ++ L     GYQ L+EL +R    D  + ++ 
Sbjct: 63   IGLQLTIAL-NNVDGTNL---------ELLFLAKDRAGYQNLMELSTRQQTSD--RDTLP 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    ++   +   +++      P     F  S   AE  ++       D+  + L  + 
Sbjct: 111  LTFEQIKPFLSSLYVII------PPQSTVF--SWLKAEDTVVNLLHESTDQDSLLLGINP 162

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVT 249
              D+ + S + QLA +H LPLV  +   +L+ +D  A  VL A+  +T + + +++ +  
Sbjct: 163  QLDQIQRSTLTQLAASHSLPLVGVSPVEYLNADDLFASKVLQAIDANTQLEKVEEKAKEL 222

Query: 250  PDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               YL+ +++++  +   +L +A + TVEIA +C+   +   PILP F         K  
Sbjct: 223  GKDYLQPQADILRAYQAVNLEQAADKTVEIAVKCNIDFEFKQPILPHFDTPTG----KSS 278

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR   + GL+ R     IA G    DY++RL  EL VI  M F  YFLIV D +++A
Sbjct: 279  AEYLRYLCIEGLKKR----QIAPGLKLVDYQKRLAKELKVIHEMGFDDYFLIVWDVMRFA 334

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I   PGRGS AGS+ AYAL ITDIDPL+++LLFERFLNP+R  MPD D+D   +RR
Sbjct: 335  HRTKITTDPGRGSAAGSLVAYALAITDIDPLQYNLLFERFLNPERAQMPDIDLDIPDNRR 394

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EV+ YV  KYGH RVAQIITFG+L AK  +RDV R   +    ++ L   +P+   H  
Sbjct: 395  SEVLEYVHQKYGHNRVAQIITFGTLAAKQVIRDVSRVFGLNRYAINELTGALPHG-LHIS 453

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               ++ +  R R      P    L  ++QKLEGL RH S HAAGIV+ ++PL ++VP+ +
Sbjct: 454  LAGSLKESQRLRNLLNDHPEYRLLYRVAQKLEGLPRHYSIHAAGIVLSEKPLHEIVPL-Q 512

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            +    L +TQF    +E  GL+K DFLGL+ L+++  SL  + QR  + DLS I   D +
Sbjct: 513  NGSEGLLMTQFPKDTVEALGLLKMDFLGLRNLSIMDNSLKLIRQRNPQFDLSKISLADSK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T G+FQ ES+G+R+ L  + PD  EDI+A+ +LYRPGP++NI  +  RK G
Sbjct: 573  TLALFQKGLTDGVFQFESAGIREVLVNLHPDSFEDIVAVNALYRPGPLENIPHFIARKQG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KE      P ++P+L  T G+++YQEQVMQ+A +++G+SL EAD+LRRAM KK +  M+ 
Sbjct: 633  KEHYQLPDPSLEPILGATYGILVYQEQVMQLASVMAGFSLGEADLLRRAMSKKKRATMEG 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             + +F++GA  NG S  +A  +F  + +FA+YGFN+SHA AY+ +++Q A++K +YP EF
Sbjct: 693  MRAKFMNGAQANGYSAELAKRVFNYIDQFANYGFNRSHAVAYSKMAFQMAYLKANYPAEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A M  E  NV+K+K   QDAR+  ++++ P +N     F +  N++++ L AIKG+  
Sbjct: 753  FTALMNAE-PNVDKLKMHVQDARRSGVKLVGPRINESQQQFSLSQNQLFFGLTAIKGLRR 811

Query: 848  TTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL- 905
               R I+ E   + P+  + +F SR+ SK     ++  L++AGA D  GY+R +++ +L 
Sbjct: 812  DFIREILQERQQNGPYKDIRNFISRLASKWQKPELIAPLIYAGAFDDLGYNRAEMIDALP 871

Query: 906  ---DNIQKYAQWVE-KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
                 IQ ++   E +        I A ++   ++              R   E   LG 
Sbjct: 872  MLISGIQLFSSTNELEADPELQSTIAARQEYPLTE--------------RLAKENEYLGV 917

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSR-IGWVT 1019
            Y SGHP+  Y+     + IK   +  + +R G  + +  ++   +   T+K  R + +++
Sbjct: 918  YLSGHPVTQYQ----DLAIKYRVQPASQLRPGQTVTILMLINRVKTIHTKKDHRQMAFLS 973

Query: 1020 FSEPAKEYEANFFP 1033
             ++   E EA  FP
Sbjct: 974  GTDQTGEIEATVFP 987


>gi|149371985|ref|ZP_01891304.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49]
 gi|149355125|gb|EDM43686.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49]
          Length = 1476

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 368/1092 (33%), Positives = 569/1092 (52%), Gaps = 102/1092 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            F HL  HS YS+L+   S  ++++   AD Q A+A+TD+ N+  A  FS+          
Sbjct: 262  FAHLHNHSQYSILQSTSSTQDLVNAAIADNQRAVALTDSGNMMGAFHFSRAVNNHNAAKL 321

Query: 67   ---------------------------------IQPIIGCQLDIDMQDNLKMTNQGKTPF 93
                                             +  I+GC+  +  QD+L  +N+     
Sbjct: 322  KEYEAALAAYEAVDDTATDFEGQVPDKPEKPIPVTAIVGCEFFV-CQDHLDKSNKDNGY- 379

Query: 94   PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV-RICLSWLQEIGTEGLIMLTGGSS 152
                 IV+L     GY  L ++ S  +   +G   V RI    +++   + +I+L+GG  
Sbjct: 380  ----QIVILAKNKAGYHNLAKMSSIAFT--EGFYYVPRIDREVIKKY-RDDIIILSGGMY 432

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPL 211
            G I           AE+ LL +K+ FGD  Y+ + RH   D  R +Q ++  +  H++ L
Sbjct: 433  GEISSKILNVGENQAEEALLWWKEEFGDDFYLEILRHGQEDEDRVNQTIIDFSRKHDVKL 492

Query: 212  VATNNSLFLSEEDYEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIF 264
            +A NN+ ++ +E   AHD+L+ V      +T + +    R      ++Y K++ EM  IF
Sbjct: 493  IAANNTYYIDKESANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSQDEMKLIF 552

Query: 265  SDLPEALENTVEIARRCSFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAV 316
             DLPEA+ N  E+  +          +LP F         E E D  ++ E   L++   
Sbjct: 553  KDLPEAIINIAEVIEKIEPYSLQRDVLLPVFDIPDEFKVAEDEIDGGKRGENAFLKHLTY 612

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             G + R        G    + ++RLDFEL+VIA   + GYFLI  DFI+ A+K ++ VGP
Sbjct: 613  IGAKERY-------GEITDEIKERLDFELDVIANTGYPGYFLITEDFIREARKLDVSVGP 665

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGS AGSV AY L IT+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V++YV +
Sbjct: 666  GRGSAAGSVVAYCLKITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMQYVID 725

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN--DPAHPVSLQAIAD 494
            KYG  +VAQIIT+G++ AK+++RD  R L +P ++ D + KLIPN    A          
Sbjct: 726  KYGGNQVAQIITYGTMAAKSSIRDTARVLDLPLNEADHVAKLIPNMTKLAKVFGYSEKEL 785

Query: 495  DSRFREARLADPSVDRLLEISQ-------------KLEGLYRHASTHAAGIVIGDRPLSQ 541
              +FR   L  P V  L+  S+             KLEG  R+   HA G++I    ++ 
Sbjct: 786  KQKFRSDEL--PKVLELIATSEGTDLTAETINQAKKLEGSVRNTGIHACGVIITPSDITN 843

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSL 600
             VP+     SDL VTQF+   +E AGL+K DFLGLKTLTL++ ++  +  + G+ +D   
Sbjct: 844  YVPVSTAKDSDLYVTQFDNSVVEDAGLLKMDFLGLKTLTLIKDTVKLVKHKHGIDLDPDN 903

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
             P DD  TY L     T+GIFQ ES+GM++ ++ ++P    D+IA+ +LYRPGP++ I  
Sbjct: 904  FPLDDVPTYELFQRGETVGIFQYESAGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPS 963

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RKNG+E+I    P ++  LKET G+ +YQEQVM ++Q L+ +S  +ADVLR+AMGKK
Sbjct: 964  FIRRKNGEEEIEYDLPAMEEYLKETYGITVYQEQVMLLSQKLANFSKGDADVLRKAMGKK 1023

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K  +DK K RFI  A  NG        I++    FA Y FNKSH+  YA I+YQTA++K
Sbjct: 1024 QKAVLDKMKPRFIENAVGNGHDAEKLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLK 1083

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSL 839
             HYP E++AA ++  M +++++  F ++ ++  ++I+ P VN     F V D   + + +
Sbjct: 1084 AHYPAEYMAAVLSNNMRDIKQVTFFMEECKRMGLEILGPDVNESFFKFSVNDRGAVRFGM 1143

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             AIKGVG      I+E   +  + S+ D   R+D +  N++  E+L  AG  D F   R 
Sbjct: 1144 GAIKGVGANAVATIVENREEAKYKSIFDMAKRIDLRSANKKAFENLALAGGFDSFNAHRA 1203

Query: 900  QLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            Q L         L+ + KYA   ++++ +   ++F         +  +       +  + 
Sbjct: 1204 QYLHQDADGQTFLEKVLKYANKYQESKNSSQVSLFGESSDVQIPEPEVPPCEEWGTMKKL 1263

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMG---IKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
              E+ V+G Y SGHPLD +K  +R      +  + E    + G  +    +V   Q +++
Sbjct: 1264 RQEREVVGVYISGHPLDDFKIEMRSFANCKVADFNELEQHV-GKEMSFGGIVADVQHRES 1322

Query: 1010 RKGSRIGWVTFS 1021
            + G   GW  F+
Sbjct: 1323 KAGK--GWAIFT 1332


>gi|311745732|ref|ZP_07719517.1| DNA polymerase III, alpha subunit [Algoriphagus sp. PR1]
 gi|126575175|gb|EAZ79525.1| DNA polymerase III, alpha subunit [Algoriphagus sp. PR1]
          Length = 1428

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 377/1073 (35%), Positives = 574/1073 (53%), Gaps = 86/1073 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VHS YS+L+    +  ++ K      PAIA+TD  N+ +A  F ++A +  I+PI
Sbjct: 244  FTHLHVHSQYSVLQATSEIPAMVAKAKEMGMPAIAMTDHGNMMAAFHFVKEALSNDIKPI 303

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129
            +GC+       NL    + K+        VL+     GY  L +L S  Y   +G   + 
Sbjct: 304  LGCEF------NLCRDRKNKSSKDDGYQTVLIAKNKAGYHNLAKLAS--YANIEGFYYLP 355

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    LQ+   + LI  TGG  G I           AE+  L +K+ FG+  YV L RH
Sbjct: 356  RIDKEVLQQYKGD-LIATTGGLWGEIPFLILNVGETQAEEAFLWWKEQFGEDFYVELCRH 414

Query: 190  RGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD---- 244
               +  + ++V+ + A  H++   A NNS + ++ D +AHD+L+ V    +V +      
Sbjct: 415  GIPEEEKVNEVLLEFAKKHDVKYFAANNSYYTNKADAKAHDILLCVKDGELVEKPKKYIG 474

Query: 245  -RPR------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-- 295
             R R         ++Y+K+  EM  +F+DLPEA+E T EI  +          +LP F  
Sbjct: 475  KRGREFRYGFPNDEYYIKSPEEMKKLFADLPEAIECTAEITDKIEPYKLAREVLLPAFDI 534

Query: 296  ------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                   E E D  ++ E   LR+    G + R  +          +  +RLDFEL  I 
Sbjct: 535  PDEFKHPEDEVDGGKRGENAFLRHLTYEGAKKRYEE-------ITPEIEERLDFELKTIE 587

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               + GYFLIV DFI  A+K  + VGPGRGS AGS  AY   IT+IDP+ ++LLFERFLN
Sbjct: 588  NTGYPGYFLIVQDFIVEARKLGVSVGPGRGSAAGSAVAYCTGITNIDPIAYNLLFERFLN 647

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            PDR+S+PD DIDF    R +VI YV  KYG  +VAQIIT+G++ AK+A+RD  R L +P 
Sbjct: 648  PDRVSLPDIDIDFDDHGRQKVIDYVIKKYGANQVAQIITYGTMAAKSAIRDTARVLNLPL 707

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD---------PSVDRLLEISQK--- 517
            +   RL  L+P+     + L+A+   +  R A L+D            D L+ IS+    
Sbjct: 708  ADAGRLANLVPD-----IKLKALFGLAGNR-AALSDKLKGQGELIAKADELIRISKGQDE 761

Query: 518  ----------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
                      LEG  R+   HA G++I    ++  VP+     SD+  TQF+   +E AG
Sbjct: 762  SAKTINQATMLEGSVRNLGIHACGVIITPDDITNFVPVALAKDSDMVCTQFDNSVVESAG 821

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGLKTLTL++ ++  + +R G+++D    P DD +TY L     T+GIFQ ES+
Sbjct: 822  LLKMDFLGLKTLTLIKDAVKIVKERHGIELDPEKFPIDDVKTYELFQRGETVGIFQYESA 881

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            GM++ +  ++P    D+IA+ +LYRPGP++ I  +  RK+G+E I      ++  L ET 
Sbjct: 882  GMQKYMRELKPTVFADLIAMNALYRPGPLEYIPSFIRRKHGEEPITYDLDDMEEYLNETY 941

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+ +YQEQVM ++Q L+G++  EADVLR+AMGKK+K+ +DK K +F++ A++ G  K+  
Sbjct: 942  GITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKLKDVLDKMKPKFVNQAAEKGHDKSKL 1001

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              I++    FA Y FNKSH+  YA ++YQTA++K HYP E+LA+ ++  M+++ ++  F 
Sbjct: 1002 EKIWKDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYLASVLSNNMNDISQVTFFM 1061

Query: 807  QDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDS 864
            ++ ++  I ++ P VN     F V  +  I + +AAIKG G+     I+ E   + PF +
Sbjct: 1062 EECKRSGIPVLGPDVNESKNGFTVNAEGEIRFGMAAIKGAGSAAVDEIIKEREENGPFKN 1121

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQSLDN-------IQKYAQWVE 916
            L DF  RV+SK LN++ +E+L  AG  DCF  + R Q L++ D          KYAQ V+
Sbjct: 1122 LFDFAKRVNSKALNKKTMEALAMAGGFDCFPEHHRRQYLEAADGDLTLIEKATKYAQKVQ 1181

Query: 917  KNRTNKHENIFAHEKGTFSDKI----TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
            +   +   ++F    G+    +     +E FS      +   E+ V+G Y SGHPLD Y+
Sbjct: 1182 QEEESAQVSLFGGSSGSMDIPLPSVAPMEPFS---QLQQLNIEKEVVGLYISGHPLDQYR 1238

Query: 973  PILRKM---GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
              +       +    +  +      I+LA  V S   + T+ G   G +T  +
Sbjct: 1239 LEIESFTNANLPDLNDIDSFKNKKEIKLAGSVSSFAHRTTKNGKPFGTLTMED 1291


>gi|159037409|ref|YP_001536662.1| DNA polymerase III subunit alpha [Salinispora arenicola CNS-205]
 gi|157916244|gb|ABV97671.1| DNA polymerase III, alpha subunit [Salinispora arenicola CNS-205]
          Length = 1177

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 379/1068 (35%), Positives = 571/1068 (53%), Gaps = 58/1068 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YS+L+GA  L ++  ++     PA+A+TD  N+  A +F ++A AAG+ P
Sbjct: 4    SFAHLHVHTEYSMLDGAARLKDLFAEVNRQGMPAVAMTDHGNMHGANDFYKQAMAAGVTP 63

Query: 70   IIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            I+G +  +  +             +  +   +       + +      G   L +L SR 
Sbjct: 64   ILGIEAYVAPESRFHKQRVRWGRPEQKSDDVSGSGGYTHMTIWARNKVGLHNLFKLTSRS 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +      +  R+    L E   +GL+  TG  SG +           A K    ++ +FG
Sbjct: 124  FTEGFFVKWPRMDAELLAE-HADGLMATTGCPSGEVQTRLRLEQYDEALKAAARYQDIFG 182

Query: 180  -DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
             +  ++ +  H G D  R    ++ ++++  ++P V TN++ +  +E  EAHDVL+ V  
Sbjct: 183  KENFFLEVMDH-GIDIERRVRQELAEISHKLDIPPVVTNDTHYTHQEQSEAHDVLLCVQT 241

Query: 237  STVVSQKDRPRV-TPDHYLKNRSEMVSI-FSDLP-EALENTVEIARRCSFILQVH-APIL 292
            +  VS  +R R     +Y+K+  EM +I  SDL  +   NT+ +A +           ++
Sbjct: 242  AANVSDPNRFRFDGSGYYIKSADEMRAIDSSDLWLQGCRNTLLVAEKVDPTGMFDFRNLM 301

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            PRF   E +     +E+  R +   GL  R   G        + + ++ ++EL VI +M 
Sbjct: 302  PRFPVPEGE----TDESWFRKETFKGLARRFPDGV------PETHVKQAEYELGVIIQMG 351

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F  YFL+VADFIQWAK   I VGPGRGS AGS+ AYAL ITD+DPL   L+FERFLNP+R
Sbjct: 352  FPSYFLVVADFIQWAKGEGIAVGPGRGSAAGSLVAYALGITDLDPLPHGLIFERFLNPER 411

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD DIDF + RR EVI+YV  K+G ++VAQI TFG+++AKAA++D  R L  PY+  
Sbjct: 412  VSMPDVDIDFDERRRGEVIKYVTEKWGEDKVAQIATFGTIKAKAAIKDSARVLGYPYAVG 471

Query: 473  DRLCKLIPNDPA---HPVSLQAIAD--DSRFREAR------LADPSVDRLLEISQKLEGL 521
            DR+ K +P  PA     + L  I D   SR+ EA        +DP V ++++ ++ +EGL
Sbjct: 472  DRITKAMP--PAVMGKDIPLTGIFDPKHSRYAEAGEIRGLYESDPDVKKVIDTARGIEGL 529

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HAAG+++   P+   +P+ R       +TQF+    E  GL+K DFLGL+ LT+
Sbjct: 530  IRQTGVHAAGVIMSAEPIIDHIPLMRRDADGAIITQFDYPTCESLGLLKMDFLGLRNLTI 589

Query: 582  LQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +L +  +  G  VDL  +P DD  TY LL+   TLG+FQL+   MR  L  M+PD  
Sbjct: 590  IDDALKNIESNHGRTVDLLKLPLDDTPTYELLSRGDTLGVFQLDGGPMRSLLRTMKPDNF 649

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQ 694
            EDI A+++LYRPGP+  ++   Y  RKNG ++I  IHP L +P+   L  T G+I+YQEQ
Sbjct: 650  EDISAVLALYRPGPMGANSHTNYALRKNGLQEITPIHPELAEPLEEILGPTYGLIVYQEQ 709

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            V + AQ+L+GYSL +AD+LRRAMGKK KE +DK+   F  G   NG S      ++++L 
Sbjct: 710  VQRAAQVLAGYSLGKADLLRRAMGKKKKEVLDKEFVPFRDGMRGNGYSDEAIQTLWDILV 769

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FADY FNK+H A Y ++SY T ++K +YP E++AA +T   D+ +K+  +  + R+  I
Sbjct: 770  PFADYAFNKAHTAGYGLVSYWTGYLKANYPAEYMAALLTSVGDDKDKMALYLSECRRMGI 829

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873
            Q++PP VNT    F      I + LAAI+ VG      IM    +K  +    DF S+VD
Sbjct: 830  QVLPPDVNTSAGPFTPVGRDIRFGLAAIRNVGANVVSAIMRCRGEKSAYTDFYDFLSKVD 889

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQ-SLDNIQKYAQWVEKNRTNKHENIFAH--- 929
            +   N++ +ESL+ AGA D   + R  LL    D I  YA    K    +++   A    
Sbjct: 890  AVVCNKKTIESLIKAGAFDSLDHPRRGLLAVHADAIDAYADVKRKEAVGQYDLFGAGFAD 949

Query: 930  -EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG---IKGYEE 985
             E GT +  +        +   +   E+ +LG Y S HPL   + +L K     I    E
Sbjct: 950  PEVGTSTTVMPAIVDGEWDKREKLAFEREMLGLYVSDHPLFGLEHVLGKEADTTIAALSE 1009

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G  + LA ++   Q++ T++G      T  + A   E  FFP
Sbjct: 1010 EGTIPDGTVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1057


>gi|34539911|ref|NP_904390.1| DNA polymerase III subunit alpha [Porphyromonas gingivalis W83]
 gi|34396222|gb|AAQ65289.1| DNA polymerase III, alpha subunit [Porphyromonas gingivalis W83]
          Length = 1228

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 381/1116 (34%), Positives = 596/1116 (53%), Gaps = 111/1116 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------------ 58
            FVHL VHS +SLL+G  ++N+++DK  AD  P IA+TD   +F   EF            
Sbjct: 4    FVHLHVHSQFSLLDGQAAINDLVDKAIADGMPGIALTDHGAMFGIKEFYNYVEKKNSGHN 63

Query: 59   -SQKACAAGI-----------------------------------QPIIGCQLDIDMQDN 82
             + K C   +                                   +PI+GC+     +  
Sbjct: 64   ATLKDCRRELDQLNDSKSADMLTDEERNRIVKLQQKIEETKKLLFKPILGCEAYCARRTR 123

Query: 83   LKMTNQGKTPFPTVPSI-------VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
                NQ   P+    SI       +LL     GY+ LI++VS  +   Q  +  RI    
Sbjct: 124  FDKDNQIPDPYHPRRSIDASGWHLILLAKNLRGYKNLIKMVSYSWTEGQYYRP-RIDKEL 182

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY--- 192
            LQ+   EG+I+ +    G I +         AE+ +L FK+LFGD  Y+ +QRH  +   
Sbjct: 183  LQKY-HEGIIVSSACLGGEIPQHIMAGEIAKAEEAILWFKELFGDDYYLEIQRHETHNPL 241

Query: 193  ---DRYRESQ-----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
               D + + Q     +++L     + ++ATN+  F +EED EAHD L+ ++    +   +
Sbjct: 242  GNQDVFPQQQRVNRVILELGKKLGVKVIATNDVHFCNEEDAEAHDRLICLSTGKDLDDPN 301

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDI 303
            R R T   ++K  +EM +IF DLPE L NT+EI  +       +  ++P F I  E    
Sbjct: 302  RMRYTKQEWMKTTAEMSAIFEDLPETLSNTLEILDKVELYSIDNKALMPDFPIPPE---- 357

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             K++++ LR     G   +  +        + + ++R+DFEL  I  M F GYFLIV DF
Sbjct: 358  YKDDDDYLRFLTYEGARRKYGEDL------SDEIKERIDFELETIKGMGFPGYFLIVQDF 411

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I  A+   + VGPGRGS AGS  AY L ITDIDP+++ LLFERFLNPDR+SMPD D+DF 
Sbjct: 412  IAAARSMGVSVGPGRGSAAGSAVAYCLGITDIDPIKYHLLFERFLNPDRISMPDIDVDFD 471

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND- 482
             D R E++R+V  KYG ERVA IIT+G++  K++++DV R  ++P  + +RL KL+P+  
Sbjct: 472  DDGRAEILRWVTEKYGKERVAHIITYGTMATKSSIKDVARVQRLPLLESNRLAKLVPDKI 531

Query: 483  PAHP-VSLQ-AIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P    V+L+ AI      ++A L+   V R  L+ +Q LEG  R+   HA GI+IG   +
Sbjct: 532  PGEKKVNLKKAIEFVPELKQASLSSDKVMRDTLKYAQMLEGNVRNTGVHACGIIIGKTDI 591

Query: 540  SQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
            S +VP+     +D + +L VTQ+    IE+ GLIK DFLGLKTL++++++L  + +R G+
Sbjct: 592  SDVVPVSTAPDKDTKEELLVTQYEGSVIEQTGLIKMDFLGLKTLSIIKEALVNIKRRHGI 651

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +++  IP DD  TY L +   T+G FQ ES GM++ L  +QP   ED+IA+ +LYRPGP
Sbjct: 652  DLNIDTIPLDDPLTYKLYSDGRTIGTFQFESGGMQKYLRELQPSAFEDLIAMNALYRPGP 711

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RK+G+E I    P ++  LKET GV +YQEQVM +++ L+G++  ++D LR
Sbjct: 712  MDYIPSFIARKHGREPIDYDLPEMEEYLKETYGVTVYQEQVMLLSRKLAGFTRGQSDELR 771

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +AMGKK+ E+M+  K +F+ G +KNG  + +   I+    KFA Y FNKSHA  Y+ ++Y
Sbjct: 772  KAMGKKLIEKMNVLKVKFLEGGNKNGHPEEVLEKIWTDWEKFASYAFNKSHATCYSWVAY 831

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN- 833
            QTA++K +YP E++A +++  ++N+ +I K   + +   I ++ P VN   + F V  N 
Sbjct: 832  QTAYLKANYPAEYMAGALSRNLNNITEITKLMDECKSMKIGVLVPDVNESEMKFSVNANG 891

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + L+A+KGVG+     I+ E  A+  +  + DF  R++    NR+ +ESL  AGA D
Sbjct: 892  DIRFGLSAVKGVGSGAVEQIIAEREANGLYKDIFDFVERINLSACNRKTMESLALAGAFD 951

Query: 893  CFGYSRMQLLQS---------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
             F  SR + +           +  + +Y   V++ + ++  ++F  E+     +      
Sbjct: 952  SFALSREEYMAPPLTGREESYIQALMRYGSVVQEEKHSQSNSLFGEEEDLMIPRPQPSPT 1011

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------TIRGNNIR 996
               N   R   E+ ++G Y S +P+  Y+ IL       Y  + A       ++ G N+ 
Sbjct: 1012 EPWNDLERLNKERELVGLYLSSNPMAQYQVILDH-----YCNTHAADLTDPDSLVGKNLV 1066

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            LA +V    Q  +R  +    +T  + +   E   F
Sbjct: 1067 LAGIVTKAFQGISRSNNPYSKITLEDLSGTGEIPLF 1102


>gi|218264823|ref|ZP_03478511.1| hypothetical protein PRABACTJOHN_04221 [Parabacteroides johnsonii DSM
            18315]
 gi|218221765|gb|EEC94415.1| hypothetical protein PRABACTJOHN_04221 [Parabacteroides johnsonii DSM
            18315]
          Length = 1266

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 374/1129 (33%), Positives = 589/1129 (52%), Gaps = 120/1129 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL VH+ YSLL+G  S++ ++DK   D  PAIA+TD   +F   EF  K      +P+
Sbjct: 4    FIHLHVHTQYSLLDGQASIDALIDKAQKDGMPAIAVTDHGVMFGIKEFFNKVSKKNGKPL 63

Query: 71   IGCQLDID-----MQDNLKMTNQGKTPFPTVPS--------------------------- 98
             G   D +     ++   ++T++ +     +P+                           
Sbjct: 64   -GAIKDYEKELKELKSKTELTSEEQARLEEIPAKIEEEKKKIFKPIFGCECYCARNGRHS 122

Query: 99   ------------IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146
                        +++L     GY+ LI++VS  +   +G          L E   E LI+
Sbjct: 123  KLASQNDRSGWHLIVLAKNLNGYKNLIKMVSLSWT--EGFYGRPRIDKELLEKYHEDLII 180

Query: 147  LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV------ 200
             +    G I +         AE+ +L FK LFG+  Y+ +QRH  +D      V      
Sbjct: 181  CSACIGGEIPQHILNGRMDKAEESVLWFKNLFGEDYYLEIQRHETHDPNAAQDVYPHQVT 240

Query: 201  -----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
                 ++LA  H++ ++ATN+  F++ ED EAHD L+ ++    +   +R R T   ++K
Sbjct: 241  ANKVILELARKHDIKVIATNDVHFVNAEDAEAHDRLICLSTGKDLDDPNRMRYTKQEWMK 300

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEKE 299
              +EM ++FSD+PEAL NT+EIA +  F    H PI+P                +F E++
Sbjct: 301  TTAEMNTLFSDIPEALSNTLEIADKVEFYSIDHGPIMPTFAIPEDFGTEEGYRRKFTEQD 360

Query: 300  CDD----------IQKEEENELRNKAVAGLE--------------VRLAQGAIAKGYHAQ 335
              D          +  EE    + K + G E              +      I  G    
Sbjct: 361  LFDEFTRDENGNVVLSEEAAHDKIKKLGGYEKLYRIKLEADYLKKITYDGAKICYGDELN 420

Query: 336  D-YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTIT 393
            D  ++RL+FEL+++  M F GYFLIV DFI+ A++   + VGPGRGS AGS  AY L IT
Sbjct: 421  DEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAVAYCLGIT 480

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
             IDP+++ LLFERFLNPDR+S+PD D DF  D R EV+R+V  KYG ERVA IIT+G++ 
Sbjct: 481  RIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHIITYGTMA 540

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ---AIADDSRFREARLA-DPSVD 509
             K+A++DV R  ++P ++ +RL KL+P+        +   AI      +EA    DP   
Sbjct: 541  TKSAIKDVARVQKLPLAESNRLAKLVPDKIPDMKKFKLKDAINYVPELKEAATGNDPLAR 600

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEK 565
              L+ +Q LEG  R+   HA G++IG   +S +VP+     +D   ++ VTQ+    IE+
Sbjct: 601  DTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQYEGSVIEE 660

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GLIK DFLGLKTL++++++++ +    G ++D+  I  +D  TY L     T G FQ E
Sbjct: 661  TGLIKMDFLGLKTLSIIKEAIENIRLTTGHELDIDHISLEDPATYKLYCDGKTTGTFQFE 720

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S+GM++ L+ +QP   ED+IA+ +LYRPGP+D I  +  RK GKE+I    P+++  LK+
Sbjct: 721  SAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPVMERYLKD 780

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+ E+M+  K +F++G   NG  + 
Sbjct: 781  TYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGKTNGYKEE 840

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
                I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA ++  + N+  I K
Sbjct: 841  TLQKIWSDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPSEYMAAVLSRSLSNIVDITK 900

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKPF 862
            F  + +   IQ++ P VN   + F V  N+ I + L A+KGVG    ++I+E    + P+
Sbjct: 901  FMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGEAAVQNIIEERRKNGPY 960

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNIQKYAQWV 915
              + DF  RV     N++ +ESL  AGA D FG  R Q           L+ + +Y    
Sbjct: 961  KDIFDFVERVSLTACNKKNIESLALAGAFDNFGIQREQFFAETGKGEIFLETLVRYGNKF 1020

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            + +++    ++F  +      K  + K    +   R   E+ ++G Y S HPLD Y+ IL
Sbjct: 1021 QTDKSTATNSLFGGDAFIAIAKPEIPKCERWSDLERLNKEKELVGIYLSAHPLDEYRIIL 1080

Query: 976  RKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
              +   G  E      + G ++    +V   ++  T+KG+  G +   +
Sbjct: 1081 TYVCNTGMAEINDKENLVGKDLLFGGIVTDFREGMTKKGNPYGIIKIED 1129


>gi|220912350|ref|YP_002487659.1| DNA polymerase III subunit alpha [Arthrobacter chlorophenolicus A6]
 gi|219859228|gb|ACL39570.1| DNA polymerase III, alpha subunit [Arthrobacter chlorophenolicus A6]
          Length = 1185

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 382/1050 (36%), Positives = 560/1050 (53%), Gaps = 72/1050 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  L  + D+      PA+A TD   LF A +F QKA A GI+P
Sbjct: 7    SFVHLHTHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWQKAQAKGIKP 66

Query: 70   IIGCQLDID----MQDNLKM----TNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSR 118
            IIG +  +       D  ++     NQ K       S   + LL     G + L    S 
Sbjct: 67   IIGVEAYVTPGTARGDKTRVRWGEENQRKDDISGGGSYTHMTLLSYNNVGMRNLFRASSI 126

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L     +  R+    L    +EGLI  TG  SG +         + A +    F+ +F
Sbjct: 127  ASLDSVFGKWPRLDRELLNTY-SEGLIATTGCPSGEVQTRLRLGQYREAVEAAAEFRDIF 185

Query: 179  GDRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            G   Y       G D  R     +++LA    LPLVATN+  +  E D +AH+ L+A+  
Sbjct: 186  GAENYFCELMDHGLDIERRVTGDLLRLAKELNLPLVATNDLHYTHEHDAKAHEALLAIQS 245

Query: 237  STVVSQKDRPR-------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + + +                +YLK+  EM  +F D PEA +NT+ IA RC      +A
Sbjct: 246  GSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMRELFRDHPEACDNTLLIAERCEVSFNTNA 305

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +PRF     +D    E + L  +   GL+ R  +G         + R++ D+EL VI 
Sbjct: 306  NFMPRFPCPPGED----ETSWLVKEVDKGLQYRYPKGI------PDEVRKQADYELGVIT 355

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPLR  L+FERFLN
Sbjct: 356  SMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLRHGLIFERFLN 415

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            PDR+SMPDFD+DF   RR EVI YV  KYG ERVA I+T+G+++ K AL+D  R L  P+
Sbjct: 416  PDRVSMPDFDVDFDDRRRSEVIDYVTRKYGDERVAMIVTYGTIKTKQALKDSSRVLGYPF 475

Query: 470  SQVDRLCKLIP----------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            S  ++L K +P           D  +P S +  ++   FR+    DP   ++ E +  +E
Sbjct: 476  SMGEQLTKALPPAVMAKDIPLADIQNPES-KRYSEAGDFRQLVSTDPEAAKVFETALGIE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++   P+  ++P+ R  +    +TQF+    E  GLIK DFLGL+ L
Sbjct: 535  GLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFLGLRNL 594

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +L+ +   RG+ +DL  +  DD  +Y LL    TLG+FQL+   MR  L+ M+PD
Sbjct: 595  TIISDALENIKMNRGIDLDLENLELDDAPSYELLARGDTLGVFQLDGGPMRSLLKLMKPD 654

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI A+++LYRPGP+  +    Y  RKNG ++++ IHP ++  LKE    T G+I+YQ
Sbjct: 655  NFEDISAVLALYRPGPMGANAHTDYALRKNGIQEVIPIHPELEEPLKEILGGTYGLIVYQ 714

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM +AQ L+GYSL +AD+LRRAMGKK K E+DKQ   F  G   NG S      ++++
Sbjct: 715  EQVMAVAQKLAGYSLGQADILRRAMGKKKKSELDKQFAGFSQGMQDNGYSMAAVKTLWDI 774

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  F+DY FNK+H+AAY VISY TA++K HY  E++AA +T   D+ +K   +  + R+ 
Sbjct: 775  LLPFSDYAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDKSAIYLNECRRM 834

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871
             I ++PP VN   ++F      I + + AI+ VG      ++ A  ++  F S +D+  +
Sbjct: 835  GITVLPPDVNESALNFTPVGTDIRFGMGAIRNVGVNAVEAMVAARESEGAFTSFKDYLMK 894

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V +   N+R +ESL+ +GA D  G+ R  L    +        +++N      ++FA   
Sbjct: 895  VPAVVCNKRTIESLIKSGAFDSLGHHRRALAMIHEEAIDSVITLKRNEAIGQFDLFA--- 951

Query: 932  GTFSDKITLEKFSVENSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
              F +  +    S+E   +       +   E+ +LG Y S HPL   + +L +      E
Sbjct: 952  -GFEEAESEASLSIEIPDLPEWEKKDKLSFERDMLGLYVSDHPLQGLEGVLSQHA----E 1006

Query: 985  ESVATIRGNN-------IRLAAMVVSKQQK 1007
             S+ TI G +       + +A M+ S  ++
Sbjct: 1007 MSITTILGEDGPQDGAILTIAGMITSLSRR 1036


>gi|163841216|ref|YP_001625621.1| DNA polymerase III subunit alpha [Renibacterium salmoninarum ATCC
            33209]
 gi|162954692|gb|ABY24207.1| DNA polymerase III alpha subunit [Renibacterium salmoninarum ATCC
            33209]
          Length = 1176

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 377/1042 (36%), Positives = 564/1042 (54%), Gaps = 65/1042 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  L ++ +  A     ++A TD   +F A +F  KA  AGI+P
Sbjct: 7    SFVHLHNHTEYSMLDGAARLTDLFEHTAELGMNSLATTDHGFVFGAFDFWSKAKNAGIKP 66

Query: 70   IIGCQLDID---MQDNLKMTNQGKTPFPTVPS------IVLLVSTAEGYQRLIELVSRMY 120
            IIG +  +      ++      G      V        + L   T +G   L  + S + 
Sbjct: 67   IIGVEAYLTPGTAHNDRTRVKWGDGSGKDVAGAGAYTHMTLWSETTQGMHNLFRM-SSLA 125

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179
             L+      R+    LQ  G +GLI  TG  SG +         + A +    F+ +FG 
Sbjct: 126  SLEGYLYKPRMDRDLLQTYG-KGLIASTGCPSGEVPTKLGLGLYKEAVQAASDFQDIFGK 184

Query: 180  DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
               Y  L  H G D  R  ++ +++LA    LPLVATN+  +   ED  AH  L+ V   
Sbjct: 185  GNFYCELMDH-GLDIERNVKADLLKLAKELNLPLVATNDLHYTHAEDASAHAALLCVQSG 243

Query: 238  TVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
            + ++   R +   D  YLK+  EM  +F D P+A +NT+ IA RC       A  +PRF 
Sbjct: 244  STLADPKRFKFDADEFYLKSPLEMRELFRDFPDACDNTLLIAERCEVAFDTGASYMPRFP 303

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E ++    E++    +   GL  R   G  A      D R++ +FE+ VI +M F GY
Sbjct: 304  VPEGEN----EQSWFVKEVEKGLHYRYPGGIPA------DVRKQAEFEVGVITQMGFPGY 353

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPL+  L+FERFLNP+R+SMP
Sbjct: 354  FLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLKHGLIFERFLNPERVSMP 413

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DF   RR EVIRYV  KYG ERVA I+T+G+++AK AL+D  R L  PYS  +RL 
Sbjct: 414  DFDVDFDDRRRGEVIRYVTEKYGDERVAMIVTYGTIKAKQALKDSSRVLGYPYSTGERLT 473

Query: 477  KLIPND---------PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
            K +P D           H    +  ++    RE    DP   ++ + +  +EGL R    
Sbjct: 474  KAMPPDVMGKGMALTDVHNKEAKRYSEAEELRELIKTDPDSQKVFDTAIGIEGLKRQWGV 533

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HAAG+++   PL  ++P+ R  +    +TQF+    E  GLIK DFLGL+ LT++  +++
Sbjct: 534  HAAGVIMSSDPLIDIIPIMRREQDGQIITQFDYPTCEGLGLIKMDFLGLRNLTIISDAIE 593

Query: 588  FLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             +   R   +DL  +  DD  +Y LL    TLG+FQL+   MR  L+ M+PD  EDI A+
Sbjct: 594  NIKLNRDFDLDLEGLELDDVPSYELLARGDTLGVFQLDGGPMRSLLKLMKPDNFEDISAV 653

Query: 647  VSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIAQ 700
            ++LYRPGP  +++   Y  RKN  ++I  IHP ++  L++    T G+I+YQEQVM  AQ
Sbjct: 654  LALYRPGPMGVNSHTNYALRKNKLQEITPIHPELEAPLEDILGTTYGLIVYQEQVMAAAQ 713

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             L+G+SL +AD+LRRAMGKK K E+DKQ+  F +G   NG S+     ++++L  FADY 
Sbjct: 714  KLAGFSLGQADILRRAMGKKKKSELDKQQADFFAGMKTNGYSQAAMDALWKVLESFADYA 773

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNK+H AAY +ISY TA++K HY  E++AA +T   D+ +K+  +  + R+  I ++PP 
Sbjct: 774  FNKAHTAAYGLISYWTAYLKEHYAAEYMAALLTSVGDDKDKLAIYLNECRRMGITVLPPD 833

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNR 879
            VN   V+F   D  I + + AI+ VG    + ++ A  +K  F++  D+  +V +   N+
Sbjct: 834  VNESSVNFTPVDTDIRFGMGAIRNVGANVVQAMVGAREEKGAFENFSDYLLKVPAVVCNK 893

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R +ESL+ AGA D  G+ R  L+   +        +++N      ++FA     FSD+  
Sbjct: 894  RTIESLIKAGAFDSLGHPRRALVAVHEEAIDSVVVLKRNEAVGQFDLFA----GFSDEEA 949

Query: 940  LEKFSVENSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               FS +   +       +   E+ +LG Y S HPL   + +L +      E +++ + G
Sbjct: 950  EPGFSTDVPDLPEWEKKDKLAFERDMLGLYVSDHPLRGLEGVLSQHA----EHTISYLIG 1005

Query: 993  NN-------IRLAAMVVSKQQK 1007
             +       + +A M+ S  ++
Sbjct: 1006 EDGLSDGAIVTIAGMITSLSRR 1027


>gi|88802679|ref|ZP_01118206.1| putative DNA polymerase III alpha subunit [Polaribacter irgensii
            23-P]
 gi|88781537|gb|EAR12715.1| putative DNA polymerase III alpha subunit [Polaribacter irgensii
            23-P]
          Length = 1445

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 358/1066 (33%), Positives = 567/1066 (53%), Gaps = 68/1066 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------SQKACA 64
            F HL  H+ YS+L+  + +  I+   A D  PA+A+TDT N+ +A  F        K   
Sbjct: 260  FSHLHNHTQYSVLQSTMEIGQIVKAAADDNMPAVAMTDTANMMAAFHFVSAILNHNKTAK 319

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              ++PI+GC+ ++    + K  +Q    F     +VLL     GY  L ++ S +  +D 
Sbjct: 320  TPMKPIVGCEFNV--CGDHKNKSQKDNGF----QVVLLAKNKRGYHNLAKM-SSIAFVDG 372

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    +++   E +I+LTG   G +         + AE+ L+ +K+ F D LY+
Sbjct: 373  FYYVPRIDREIIKKY-KEDIIVLTGNLYGEVPSKILNLGEKQAEEALIWWKEEFKDDLYI 431

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA----HSTV 239
             L RH   D +     ++  +  H + ++ATNN+ +L ++D  AHD+L+ V      +T 
Sbjct: 432  ELMRHDQQDEKIVNETLLTFSKKHNIKVIATNNTFYLEKKDANAHDILLCVKEGEKQATP 491

Query: 240  VSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF- 295
            + +    R      ++Y K+  EM ++F+DLPEA+ N  EI  +          +LP F 
Sbjct: 492  IGKGRGYRYGLPNQEYYFKSSEEMKTLFADLPEAISNIQEIVDKIEIYTLARDVLLPAFD 551

Query: 296  -------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                   I  E D  ++ E N L++    G E R        G      ++RLDFEL+VI
Sbjct: 552  IPDEFKDIADESDKGKRGENNFLKHLTFVGAEKRY-------GDITASIKERLDFELSVI 604

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +  + GYFLIV DFI+ A+  ++ VGPGRGS AGSV AY L IT+IDP+++ LLFERFL
Sbjct: 605  EKTGYPGYFLIVEDFIREARNMDVAVGPGRGSAAGSVVAYCLWITNIDPIKYDLLFERFL 664

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF  + R  V+ YV NKYG  +VAQIIT+G++ AK+++RD  R L +P
Sbjct: 665  NPERVSMPDIDIDFDDEGRGRVMDYVINKYGANQVAQIITYGTMAAKSSIRDTARVLDLP 724

Query: 469  YSQVDRLCKLIP---------NDPAHPVSLQAIADDSR-----FREARLADPSVDRLLEI 514
              + DR+ KLIP         +DP     +  +  + +      R     +  V   +  
Sbjct: 725  LFEADRIAKLIPLIKLKNIFGDDPKSKGKVAGLRSEEKQLVEELRSMSFGNDLVSETINK 784

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            +  LEG  R+   HA G++I    ++  VP+     SD+ VTQF+   +E AGL+K DFL
Sbjct: 785  ATMLEGSVRNTGIHACGVIITPGDITNYVPVALAKDSDMYVTQFDNSVVESAGLLKMDFL 844

Query: 575  GLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GLKTLTL++ ++  + A+  V +D    P DD +TY L     T+GIFQ ES GM++ + 
Sbjct: 845  GLKTLTLIKDTVKIVKARHNVDLDPDSFPLDDVKTYELFQRGETVGIFQYESPGMQKHMR 904

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
             ++P    D+IA+ +LYRPGP++ I  + NRK+G E I    P ++  L ET G+ +YQE
Sbjct: 905  SLKPTVFADLIAMNALYRPGPMEYIPSFINRKHGTEDIAYDLPAMEEYLAETYGITVYQE 964

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVM ++Q L+ ++  EADVLR+AMGKK    ++K K +F+  AS+ G        I++  
Sbjct: 965  QVMLLSQKLADFTKGEADVLRKAMGKKQIAVLNKMKPKFLEQASEKGHDAEKLEKIWKDW 1024

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNKSH+  YA I+YQTA++K HYP E++A+ ++  M++++ +  F ++ ++  
Sbjct: 1025 EAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMASVLSNNMNDIKSVSFFMEECKRME 1084

Query: 814  IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSR 871
            + +  P +N   + F V D   + + +AA+KGVG    R I+ E      + S+ D   R
Sbjct: 1085 LPVFGPDLNESFLKFSVNDEGAVRFGMAAVKGVGAGAVRAIIKEREEHGNYTSIFDLAKR 1144

Query: 872  VDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVEKNRTNKH 923
            VD +  N++  +SLV AGA D F    R Q   +       L+   KY    ++N  +  
Sbjct: 1145 VDLRAANKKSFDSLVKAGAFDSFEDTHRAQYFHTDEKGLTFLERAMKYGSKYQENENSAQ 1204

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR--KMGIK 981
             ++F         +  + +     +      E+ V+G Y S HPLD +K  L+     +K
Sbjct: 1205 VSMFGEASSVQFPEPDIPECDTWGTMELLSQEKEVIGIYISAHPLDDFKNELKFCNASLK 1264

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             ++  ++     N+  A ++   Q + ++ G   GW  F+  A++Y
Sbjct: 1265 YFKADLSKFINLNMAFAGIITDVQHRVSKAGK--GWAMFT--AEDY 1306


>gi|307069536|ref|YP_003878013.1| putative DNA polymerase III subunit alpha [Candidatus Zinderia
           insecticola CARI]
 gi|306482796|gb|ADM89667.1| putative DNA polymerase III, alpha subunit [Candidatus Zinderia
           insecticola CARI]
          Length = 1131

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 334/906 (36%), Positives = 548/906 (60%), Gaps = 44/906 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL++H+ YS+++  + +N I+     D+Q ++AITD +N+F A++F +++   GI+PI
Sbjct: 4   FTHLRLHTEYSIVDSLVKINEIIKLAKKDKQESLAITDLSNIFGAIKFYKESIKNGIKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IGC L I+ + N       K PF     +++L     GY +L +L+S+ ++ +   +  +
Sbjct: 64  IGCDLFIENKIN------KKKPF----RLLILSKNYNGYLQLCKLISKSWIYNLKDEKPQ 113

Query: 131 ICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQV--AEKRLLTFKKLFGDRLYVNLQ 187
           I  SWL++I     LI L+G  S   D  F+ N  +   AE     +KK+F +  ++ +Q
Sbjct: 114 IKKSWLKKINKNSNLIALSGYKSS--DLLFYINKKKFKKAENCAKKWKKIFNNLYFIEIQ 171

Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   +      ++++     +P+VAT+   F  ++++ AH++   +     ++   + 
Sbjct: 172 NINIKNNEIFNYNLIKIGNKLNIPIVATHPIQFCYKKEFIAHEIRYNIYKKKKLNN-SKY 230

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               +   K + E+  +F +   A++N+ +I++ C+ I  +   +L      +   I   
Sbjct: 231 HFNKEQNFKTQIEINKLFVNNLIAVKNSYKISKMCNLI--IPKGVLKLPKYNKKKKIN-- 286

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADF 363
            +NEL       L+++   G   +  + ++   Y++RL FEL +I++  FS YFL+V DF
Sbjct: 287 -DNEL-------LKIKTKIGLNKRLKNKKNLKIYKKRLKFELKIISKTNFSNYFLMVNDF 338

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           I+WAKK NI +GPGRGSGA S+ AY L ITDIDP+++ L+FERFLNP+R+S PDFDIDFC
Sbjct: 339 IKWAKKKNINIGPGRGSGASSLIAYCLFITDIDPIKYKLIFERFLNPERISFPDFDIDFC 398

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
           Q +RD +I+Y++ KYG   V+QIITFG + AK+++RDVGR L + Y+  + + KLI N  
Sbjct: 399 QKKRDIIIKYIKKKYGVNNVSQIITFGKIAAKSSIRDVGRVLGLSYNFCNNIVKLISNKK 458

Query: 484 AHPVSLQAIADDSRFREAR-LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            + ++L+ I +++ F + + L +  + +L+  S ++EG+ ++   HA GI+I    L++ 
Sbjct: 459 YYNLNLKEIVENNYFLKKKILNNKIIKKLIFFSIQIEGIIKNIGIHAGGILISKNNLNKY 518

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL---S 599
             +Y+  + ++   Q + + +E  GLIKFDFLGL TLT++ ++   + +   K+ L   +
Sbjct: 519 CALYKHSKDNIITIQNDKEDLEFLGLIKFDFLGLATLTIIDETNKNIKKINPKIKLISWN 578

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            I F D +TY LL    T+G+FQLES G++  L+    +C+EDI A++SLYRPGPI  I 
Sbjct: 579 KISFKDKKTYKLLNNANTIGVFQLESIGIQNILKKANINCLEDITAIISLYRPGPIKLIK 638

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +  RKNG  K    +  I  +L ET G++IYQEQVM++A++++ YS+  AD+LRR + K
Sbjct: 639 KFYKRKNG-YKFKFFNEKIKNVLSETYGIMIYQEQVMEVAKIIANYSMGSADLLRRIISK 697

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K  +EM K ++ FI GA KN I+   A  IF L+ KFA YGFNKSHA AYAVISY TA++
Sbjct: 698 KNLKEMHKNRKLFIKGALKNKINLKTANKIFNLMEKFAGYGFNKSHATAYAVISYYTAYL 757

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVDF--KVGDNRIY 836
           K+++P EF++A+++L ++N+ KIK   +DA   F I I+PP++N     F   + +N  Y
Sbjct: 758 KSNFPNEFISANLSLSINNINKIKFLIKDAINNFKINILPPNINYSKYKFIPIIKNNIFY 817

Query: 837 --YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK--LNRRVLESLVFAGALD 892
             Y L+AIKG+G    + I+     K F +L DF  R+   K  +N+RVL SL+++G+LD
Sbjct: 818 IRYGLSAIKGLGKIAIKLILNKRKKKIFKNLYDFIFRIIKNKNLINKRVLNSLIYSGSLD 877

Query: 893 CFGYSR 898
            F  +R
Sbjct: 878 IFNKNR 883


>gi|325286607|ref|YP_004262397.1| DNA polymerase III subunit alpha [Cellulophaga lytica DSM 7489]
 gi|324322061|gb|ADY29526.1| DNA polymerase III, alpha subunit [Cellulophaga lytica DSM 7489]
          Length = 1479

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 368/1097 (33%), Positives = 566/1097 (51%), Gaps = 102/1097 (9%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            +S  F HL  H+ +S+L+  +S+ +++   A +  PA+A+TD  N+  A  F        
Sbjct: 257  ESAEFSHLHNHTQFSILQSTISVPDLIKATAKNNMPAVAMTDHANMMGAFHFVNGVLNHN 316

Query: 67   -------------------------------------IQPIIGCQLDI-DMQDNLKMTNQ 88
                                                 I PIIGC+  + +   N    + 
Sbjct: 317  KGVKSRNDANEIRYEATQENRLEEGEEPLHEFIPEKEITPIIGCEFQVCEDHTNKSQKDN 376

Query: 89   GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLT 148
            G         IV L     GY  L ++ S  ++   GK  V      + E   E LI+LT
Sbjct: 377  GY-------QIVFLAKNKNGYHNLAKMSSIAFV--DGKYYVPRIDKKIIEQYKEDLIVLT 427

Query: 149  GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTH 207
            G   G +           AE  LL +K+ FGD LY+ + RH   D  R +QV ++ A  H
Sbjct: 428  GNLYGEVPSLVLNVGENQAEDALLWWKEQFGDDLYMEIMRHGQEDEDRVNQVLIKFAKKH 487

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEM 260
             + LVATNN+ ++ +E+  AHD+L+ V      ST + +    R      ++Y K+  EM
Sbjct: 488  NVKLVATNNTYYVEKENAYAHDILLCVKDGEKQSTPIGRGRGYRYGLPNQEYYFKSSDEM 547

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-------IEKECDDIQKEEENE-LR 312
              +F D+PEA+ N  E+  +          +LP F        E++  D  K  EN+ LR
Sbjct: 548  KELFKDIPEAITNIQEVVDKIETFTLARDVLLPAFDIPEEFVFEEDKIDGGKRGENKFLR 607

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            +    G ++R        G    +  +RLDFEL VI +  + GYFLIV DFI+ A+K ++
Sbjct: 608  HLTYEGAKIRY-------GEITPEIDERLDFELKVIEKTGYPGYFLIVEDFIRAARKMDV 660

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS  AY L IT++DP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ 
Sbjct: 661  SVGPGRGSAAGSAVAYCLWITNLDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMD 720

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN--DPAHPVSLQ 490
            YV +KYG  +VAQIIT+G++ AK+++RD  RAL +P    DR+ KLIPN       + + 
Sbjct: 721  YVIDKYGSNQVAQIITYGTMAAKSSIRDTARALDLPLGDADRMAKLIPNMSKLKKIIGVD 780

Query: 491  AIADDSRFREARLADPSVDRLLEISQK-------------LEGLYRHASTHAAGIVIGDR 537
                 S+F    LA   ++ LLEIS+              LEG  R+   HA G++I   
Sbjct: 781  EKTLKSKFNSEELA--KINELLEISEGDDLESETLNQAYVLEGSVRNTGIHACGVIITPD 838

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKV 596
             +++ VP+     SD+  TQF+   +E AGL+K DFLGLKTLTL++ ++  + A+ GV++
Sbjct: 839  DITKFVPVALAKDSDMYCTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKIVKAKHGVEL 898

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D    P DD +TY L     T+G+FQ ES GM++ +  ++P    D+IA+ +LYRPGP++
Sbjct: 899  DPENFPLDDQKTYELFQRGETVGVFQYESPGMQKHMRSLKPTVFADLIAMNALYRPGPME 958

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I  +  RK+G E+I+      +  L ET G+ +YQEQVM ++Q L+ ++  EADVLR+A
Sbjct: 959  YIPSFIARKHGTEEIIYDLDACEEYLAETYGITVYQEQVMLLSQKLADFTKGEADVLRKA 1018

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK K  +DK K +FI  AS  G +      I++    FA Y FNKSH+  YA I+YQT
Sbjct: 1019 MGKKQKHVLDKMKPKFIEQASAKGHAVDKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQT 1078

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRI 835
            A+ K HYP E++AA ++  M++++ +  F ++ ++  ++++ P VN     F V D   +
Sbjct: 1079 AYCKAHYPAEYMAAVLSNNMNDIKTVTFFMEECKRMGLEVLGPDVNESYYKFAVNDAGAV 1138

Query: 836  YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + + A+KGVG      I+E    D P+ S+ D   R+D +  N+R  E+L  AG  D F
Sbjct: 1139 RFGMGAVKGVGRGAVETIVENRKKDGPYKSVFDLAKRIDLRAANKRAFENLTLAGGFDSF 1198

Query: 895  GYS-RMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
            G + R Q L         L+ + KY    ++++ +   ++F         +  +      
Sbjct: 1199 GDTHRAQYLHDEGDGITFLEKVMKYGSKFQESQNSSQVSLFGEASDVQIPEPVVPPCEEW 1258

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSK 1004
             +  +   E+ V+G Y SGHPLD +K  ++     G     ++       + +A ++   
Sbjct: 1259 GTMEKLRKEKEVVGIYISGHPLDDFKSEIKSFCNSGIAAVHNMEQYVNKELSIAGVITDV 1318

Query: 1005 QQKKTRKGSRIGWVTFS 1021
            Q + ++ G   GW  FS
Sbjct: 1319 QHRVSKNGK--GWAMFS 1333


>gi|154491985|ref|ZP_02031611.1| hypothetical protein PARMER_01616 [Parabacteroides merdae ATCC 43184]
 gi|154088226|gb|EDN87271.1| hypothetical protein PARMER_01616 [Parabacteroides merdae ATCC 43184]
          Length = 1266

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 376/1129 (33%), Positives = 591/1129 (52%), Gaps = 120/1129 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL VH+ YSLL+G  S++ ++DK   D  PAIA+TD   +F   EF  K      +P+
Sbjct: 4    FIHLHVHTQYSLLDGQASIDALIDKAQKDGMPAIAVTDHGVMFGIKEFFNKVSKKNGKPL 63

Query: 71   IGCQLDID-----MQDNLKMTNQGKTPFPTVPS--------------------------- 98
             G   D +     ++   ++T + +     +P+                           
Sbjct: 64   -GAIKDYEKELKELKSKTELTAEEQARLEEIPAKIEEEKKKIFKPIFGCECYCARNGRHS 122

Query: 99   ------------IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146
                        +++L     GY+ LI++VS  +   +G          L E   E LI+
Sbjct: 123  KLASQNDRSGWHLIVLAKNLNGYKNLIKMVSLSWT--EGFYGRPRIDKELLEKYHEDLII 180

Query: 147  LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV------ 200
             +    G I +         AE+ +L FK LFG+  Y+ +QRH  +D      V      
Sbjct: 181  CSACIGGEIPQHILNGRMDKAEESVLWFKNLFGEDYYLEIQRHETHDPNAAQDVYPHQVT 240

Query: 201  -----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
                 ++LA  H + ++ATN+  F++ ED EAHD L+ ++    +   +R R T   ++K
Sbjct: 241  ANKAILELARKHNIKVIATNDVHFVNAEDAEAHDRLICLSTGKDLDDPNRMRYTKQEWMK 300

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEKE 299
              +EM +IFSD+PEAL NT+EIA +  F    H PI+P                +F E++
Sbjct: 301  TTAEMNTIFSDIPEALSNTLEIADKVEFYSIDHGPIMPTFAIPEDFGTEEEYRQKFTEQD 360

Query: 300  CDD----------IQKEEENELRNKAVAGLE----VRLAQGAI-------AKGYHAQDY- 337
              D          +  EE    + K + G E    ++L    +       AK  +  D  
Sbjct: 361  LFDEFTRDENGNVVLSEEAAHDKIKKLGGYEKLYRIKLEADYLKKITYDGAKICYGDDLN 420

Query: 338  ---RQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTIT 393
               ++RL+FEL+++  M F GYFLIV DFI+ A++   + VGPGRGS AGS  AY L IT
Sbjct: 421  DEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAVAYCLGIT 480

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
             IDP+++ LLFERFLNPDR+S+PD D DF  D R EV+R+V  KYG ERVA IIT+G++ 
Sbjct: 481  RIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHIITYGTMA 540

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ---AIADDSRFREARLA-DPSVD 509
             K+A++DV R  ++P ++ +RL KL+P+        +   AI      +EA    DP   
Sbjct: 541  TKSAIKDVARVQKLPLAESNRLAKLVPDKIPDMKKFKLKDAINYVPELKEAATGNDPLAR 600

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEK 565
              L+ +Q LEG  R+   HA G++IG   +S +VP+     +D   ++ VTQ+    IE+
Sbjct: 601  DTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQYEGSVIEE 660

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GLIK DFLGLKTL++++++++ +    G  +D+  I  +D  TY L     T G FQ E
Sbjct: 661  TGLIKMDFLGLKTLSIIKEAIENIRLTTGHDLDIDHISLEDPATYKLYCDGKTTGTFQFE 720

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S+GM++ L+ +QP   ED+IA+ +LYRPGP+D I  +  RK GKE+I    P+++  LK+
Sbjct: 721  SAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPVMERYLKD 780

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+ E+M+  K +F++G   NG  + 
Sbjct: 781  TYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGKTNGYKEE 840

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
                I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA ++  + N+  I K
Sbjct: 841  TLQKIWSDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPSEYMAAVLSRSLSNIVDITK 900

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKPF 862
            F  + +   IQ++ P VN   + F V  N+ I + L A+KGVG    ++I+E    + P+
Sbjct: 901  FMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGEAAVQNIIEERRKNGPY 960

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNIQKYAQWV 915
              + DF  RV+    N++ +ESL  AGA D FG  R Q           L+ + +Y    
Sbjct: 961  KDIFDFVERVNLTACNKKNIESLALAGAFDNFGIQREQFFAETGKGEIFLETLVRYGNKF 1020

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            + +++    ++F  +      K  + K    +   R   E+ ++G Y S HPLD Y+ IL
Sbjct: 1021 QTDKSTATNSLFGGDAFIAIAKPEIPKCERWSDLERLNKEKELVGIYLSAHPLDEYRIIL 1080

Query: 976  RKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
              +   G  E      + G ++    +V   ++  T+KG+  G +   +
Sbjct: 1081 TYVCNTGMAEINDKENLVGKDLLFGGIVTDFREGMTKKGNPYGIIKIED 1129


>gi|196229518|ref|ZP_03128383.1| DNA polymerase III, alpha subunit [Chthoniobacter flavus Ellin428]
 gi|196226750|gb|EDY21255.1| DNA polymerase III, alpha subunit [Chthoniobacter flavus Ellin428]
          Length = 1219

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 341/841 (40%), Positives = 502/841 (59%), Gaps = 41/841 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFVHL  H+ YS L+GA+ +   + K      PA+AITD  NLF A+EF Q   ++G+ P
Sbjct: 5   SFVHLHCHTEYSTLDGAVRIKEAMKKAKEYGMPALAITDHGNLFGAIEFYQAGKSSGVNP 64

Query: 70  IIGCQLDIDMQDNLK--MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           IIGC++ +    +LK   T Q ++ F     + LL    +GY+ L++LVS  +L D    
Sbjct: 65  IIGCEVYVAPDSHLKKTATTQRESAF----HLTLLAQNDQGYRNLVKLVSIAHL-DGMYY 119

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
             RI    L + G +GLI L+G   G I++A   ++   A++    ++ + G +  ++ L
Sbjct: 120 KPRIDKELLAQYG-KGLIGLSGCLKGEINQAIIEDNLPKAKELTGAYRDILGPENFFIEL 178

Query: 187 QRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             H    + + ++ +  LA    L LVA N+  FL   D+ AHD L+ +   + ++ + R
Sbjct: 179 HNHGIEAQLKCNKTLPVLAKEFGLGLVAANDVHFLQRTDHAAHDALICIGTGSNIADERR 238

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                + Y K+ +EM ++F+++PEA +NT+ IA RC+  +   +P  P +         +
Sbjct: 239 MHYVQEVYFKSPAEMRALFAEVPEACDNTLAIAERCNITIDT-SPKYPNYTPPP----GR 293

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +   LR   +AG+  R    A      ++  ++R + E++V+ +  F+ YFLIV DFI 
Sbjct: 294 TQNEYLREITLAGMHRRYGSDA-----DSEIVQKRFELEISVLEKQGFTNYFLIVWDFIN 348

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           WAK++ IPVGPGRGS AGS+ AYA+ ITDIDP++F LLFERFLNP+R+S PD D+DFC +
Sbjct: 349 WAKEHGIPVGPGRGSAAGSMIAYAMGITDIDPIKFKLLFERFLNPERVSPPDIDVDFCVN 408

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR EVI YV+ KYG   V+QIITFG+L AK+ LRDV R     Y   DR+ K+IPN+   
Sbjct: 409 RRGEVIDYVRQKYGERAVSQIITFGTLGAKSVLRDVARVQGWSYGDADRVAKMIPNELG- 467

Query: 486 PVSLQ-----------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            ++L+                 AI  +   ++A   +P+  +L +++ KLEGL R    H
Sbjct: 468 -ITLKGLDKKNKETGQMDHIAGAIDKNPELKKAVDTEPATAQLWDVATKLEGLTRGVGVH 526

Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
           AAG+VIGDR LS  +P+ R   + + V+Q+ M  +   G++K DFLGLKTLT++  ++  
Sbjct: 527 AAGVVIGDRDLSDYIPLTRANDNSI-VSQYAMGPLTDVGMLKCDFLGLKTLTVITDAVVL 585

Query: 589 LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
           +  R    D+  IP ++  T+ LL    T+GIFQLES GM           IEDI A+++
Sbjct: 586 IRHREPDFDVDKIPLENQPTFDLLNRGETIGIFQLESGGMVSVCRQFDIKDIEDINAILA 645

Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
           LYRPGP+D I  Y  RK GK K+ + H L+  M KET GV++YQEQVMQ AQ+L+GY+L 
Sbjct: 646 LYRPGPMDLIPDYIKRKKGKAKVKAPHKLLLDMTKETYGVLVYQEQVMQAAQILAGYTLG 705

Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAA 767
            AD+LRRAMGKK KE+M K++ +F  G    + I +  A  IF+ L KFA YGFN+SH+A
Sbjct: 706 GADLLRRAMGKKDKEKMAKERIKFCEGCKNLHNIEEKTANEIFDTLEKFAGYGFNRSHSA 765

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
           AYA ISYQTA++K +YPVEF+AA M+ E+ N +KI  F  +  +  + I+PP VN   + 
Sbjct: 766 AYAWISYQTAYLKANYPVEFMAAVMSNEVSNTDKISIFVGECERMGMTILPPDVNKSGLK 825

Query: 828 F 828
           F
Sbjct: 826 F 826



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 83/160 (51%), Gaps = 5/160 (3%)

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVG-TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
            TP  D K+    I Y LAAIK VG    A  I+E +    F SLEDFC RVD KK+N++ 
Sbjct: 887  TPASDEKIHVGSIRYGLAAIKNVGEAAVAAAIVERNNKGAFQSLEDFCGRVDVKKMNKKA 946

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDK 937
            LE LV  GA D  G  R QL   +D     A    ++R     ++F       K T + K
Sbjct: 947  LECLVKCGAFDWTGVERAQLHSEIDGALAAASSANRDRAVGQFSMFDDFEISGKATKTTK 1006

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
             +  K +  +S+ +   E+ +LGFY +GHPLD Y+  L K
Sbjct: 1007 GSAPKVAPWSSTEKLAYEKELLGFYVTGHPLDEYRSALEK 1046


>gi|84495994|ref|ZP_00994848.1| DNA polymerase III subunit alpha [Janibacter sp. HTCC2649]
 gi|84382762|gb|EAP98643.1| DNA polymerase III subunit alpha [Janibacter sp. HTCC2649]
          Length = 1204

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 379/1096 (34%), Positives = 587/1096 (53%), Gaps = 92/1096 (8%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            ++  +FVHL VH+ YS+L+GA  + ++ ++      PA+A+TD   L+ A EF +KA   
Sbjct: 11   DRKDNFVHLHVHTEYSMLDGAARIGDLFNRAGELGMPALAMTDHGYLYGAHEFWRKAQGT 70

Query: 66   GIQPIIGCQLDID----MQDNLKM------TNQGK--TPFPTVPSIVLLVSTAEGYQRLI 113
            G++PIIG +  I       D  ++      T QG   +       + LL    +G + L 
Sbjct: 71   GVKPIIGLEAYITPGTHRTDKTRVKWGDERTRQGDDVSGSGAYTHMTLLAKNNDGLRNLF 130

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             + S+  L     +  RI    L   G +GLI  TG  S  I          +A++    
Sbjct: 131  RMDSQASLDQVYAKWPRIDRELLDAHG-KGLIATTGCPSSEIQTRLRLGQYDLAKQAASD 189

Query: 174  FKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            ++ LFG +  +  +  H+   +R     +++LA    LPL+ATN+S +   ED  AH  L
Sbjct: 190  YRDLFGAENYFCEVMDHQNEIERRTIKDLLRLAKELNLPLLATNDSHYTYPEDATAHGAL 249

Query: 232  MAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSF-ILQVHA 289
            + V   + +   +R +   D +YLK+ +EM   + + P+A +NT+ +A  C     +   
Sbjct: 250  LCVQSGSTLMDPNRFKFDGDGYYLKSAAEMRHTWREFPQACDNTLLVADMCEVSFTEGEG 309

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +PRF   +C    + EE+    +   GL  R  +G I    +AQ   ++ D+E+++I+
Sbjct: 310  RYMPRF---DCPP-GESEESWFVKEVQRGLSARF-EGEIPA--YAQ---KQADYEVDIIS 359

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               ++ YFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD+DP+   L+FERFLN
Sbjct: 360  SKGYASYFLVVADFINWAKENGIRVGPGRGSGAGSMCAYAMRITDLDPIPHGLIFERFLN 419

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+RMSMPDFDIDF + RR EVIRYV  KYG +RVAQI+T+G+++AK A++D  R +  P+
Sbjct: 420  PERMSMPDFDIDFDERRRGEVIRYVTEKYGSDRVAQIVTYGTIKAKQAVKDSARVMGHPF 479

Query: 470  SQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +  D+L K +P              DP HP      A+ + FR     +P    ++E ++
Sbjct: 480  NVGDQLTKAMPADVMGKGVPLSGIYDPEHP----RYAEGNEFRALVETEPHFKEVVETAK 535

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             LEGL R    HAAG+++   PL  ++P+ + ++    +TQF+    E  GL+K DFLGL
Sbjct: 536  GLEGLKRQWGVHAAGVIMSSEPLIDVIPIMKRLQDGQILTQFDYPTCETLGLVKMDFLGL 595

Query: 577  KTLTLLQKSLDFL-AQRGVKVDLSLIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALE 633
            + LT+L  +++ +   R   +DL  +  D  D  TY LL +  TLG+FQL+  GMR  L+
Sbjct: 596  RNLTILDDAIENVKTNRNEDLDLDALSKDMTDKATYRLLASGDTLGVFQLDGGGMRTLLK 655

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNN---RKNGKEKIVSIHP---------LID-- 679
             MQPD  EDI A ++LYRPGP+  +  + N   RKNGK+++  + P         +ID  
Sbjct: 656  LMQPDNFEDISAALALYRPGPM-GVNAHTNFALRKNGKQELTPLDPQLKGKLQQEMIDAL 714

Query: 680  -PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
             P+L  T G++IYQEQVM+IAQ L+GY+L  AD+LRRAMGKK KE +DK+   F +G   
Sbjct: 715  GPILGTTYGLVIYQEQVMEIAQQLAGYTLGNADLLRRAMGKKKKEVLDKEYVPFSTGMKA 774

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             G ++     ++ +L  F+DY FNK+H AAY ++SY TA++K +YP E++A  +T   D+
Sbjct: 775  KGFNEASIAALWGVLVPFSDYAFNKAHTAAYGLVSYWTAYLKANYPAEYMAGLLTSVGDD 834

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
             +K   +  + R+  I+++PP VN     F      I + +AAI+ VG      I+ A  
Sbjct: 835  KDKSALYLGECRRMGIKVLPPDVNDSVARFAAVGTDIRFGMAAIRNVGHNVVEAIIGARE 894

Query: 859  DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
            +K  F S  DF S+  +   N+R +ESL+  GA D  G SR  LL+  +        +++
Sbjct: 895  EKGAFTSFRDFLSKCPAVVCNKRTIESLIKGGAFDGLGESRAGLLRIHEEYVDAFVSIKR 954

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKF------------SVE-NSSVRFENEQRVLGFYFS 964
                  +++F    G F D+                  +VE + S     E+ +LG Y S
Sbjct: 955  QEAIGQDSLF----GAFGDEGGDGAGGDATMMGLTSVPTVEWDKSTLLTFEREMLGLYVS 1010

Query: 965  GHPLDVYKPILRKMGIKGYEESVATI-------RGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             HPL   + IL++      + ++AT+        G  + +A ++   Q K+T+KG     
Sbjct: 1011 DHPLFGVEHILQQHA----DTAIATLSAEDGKPEGTMVTVAGLITGLQIKRTKKGDLWAI 1066

Query: 1018 VTFSEPAKEYEANFFP 1033
             T  +     E  FFP
Sbjct: 1067 ATVEDLEGAVECLFFP 1082


>gi|298346985|ref|YP_003719672.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
 gi|298237046|gb|ADI68178.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
          Length = 1226

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 379/1084 (34%), Positives = 581/1084 (53%), Gaps = 82/1084 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VH+ YS+L+GA  +  ++ K   +QQ A+AITD   LF A EF Q+   AGI
Sbjct: 3    SSDFVHLHVHTDYSILDGAAKIKRLVAKAVENQQKAVAITDHGYLFGAFEFYQECRNAGI 62

Query: 68   QPIIGCQLDID-----------MQDNLKMTNQGK--TPFPTVPSIVLLVSTAEGYQRLIE 114
            +PIIG +  +                L+    G   +       + LL  T EG   L  
Sbjct: 63   KPIIGLEAYVTPGTSRFDTTRVQWGTLEQQKAGDDVSARGAYTHMTLLSHTTEGMHNLFR 122

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S   L  Q  +  R     L+    EGLI   G  SG +         Q A +     
Sbjct: 123  LGSYASLDGQMGKWPRADRELLERY-HEGLIGTAGCPSGEVQTRLRLGQYQEAVRAAGEL 181

Query: 175  KKLFG-DRLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            + +FG D  YV L  H     +R R+  +++LA     P++ATN+S ++ +ED E  D +
Sbjct: 182  QDIFGKDYFYVELMDHGLSIENRVRKD-LLRLAREINAPIIATNDSHYVYKEDREIQDAM 240

Query: 232  MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCS--FILQVH 288
            + +     +S  DR R    D+YL+   EM  +F+++PEAL+NT+ IA +C+  F     
Sbjct: 241  LCINSGDRLSNPDRFRFDGTDYYLRPSEEMHELFAEIPEALDNTLLIAEQCNVEFPDVKE 300

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +P F     +D    E +    +   GL+ R   G       +++ R+R D+E+ +I
Sbjct: 301  GTFMPVFPVPAGED----EVSWFIKEVERGLQYRFPNGI------SEEVRKRADYEVEII 350

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F  YFLIV+D+IQWAK N I VGPGRGSGAGS+ AYA+ ITD+DP++  LLFERFL
Sbjct: 351  VQMGFPSYFLIVSDYIQWAKDNGIRVGPGRGSGAGSMVAYAMRITDLDPIKHGLLFERFL 410

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DF   RR +VI YV  KYG ++V+Q++T+G++++K AL+D  R     
Sbjct: 411  NPERVSMPDIDVDFDDRRRQDVIDYVTRKYGKDKVSQVVTYGTIKSKQALKDAARISGAD 470

Query: 469  YSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
            +S+ ++L K +P              +P HP   +A      FR+    DP   ++ +++
Sbjct: 471  FSKGEKLTKAMPPAVMGKDIPLSGMYNPQHPRYKEA----EEFRKVVAEDPFNRQIFDLA 526

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
              +EG+ R    HA  +++    L+ ++PM +  +    +TQF+    E  GL+K DFLG
Sbjct: 527  AGVEGMVRQWGVHACAVIMSRETLTDVIPMMKRPQDGAMITQFDYPTCEHLGLLKMDFLG 586

Query: 576  LKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            LK LT++  +LD +   G    DL  +  DD  TY LL+T  TLG+FQL+  GMR  L+ 
Sbjct: 587  LKNLTIISDALDNIKINGKTPPDLERLDVDDKATYELLSTGETLGVFQLDGGGMRTLLKQ 646

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGV 688
            ++P   +DI ALV+LYRPGP+  ++   Y  RKNG +KI  IH  ++  LK+    T G+
Sbjct: 647  LRPTEFDDISALVALYRPGPMGANSHTNYAFRKNGLQKIEPIHSELEEPLKDILGYTYGL 706

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            IIYQEQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G  ++G S+     
Sbjct: 707  IIYQEQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMIEHGYSEDCCET 766

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++ +L  FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + D  +K+  +  +
Sbjct: 767  LWGILVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQTDK-DKLGMYLNE 825

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLED 867
             R+  I+++PP VN     F    N I + LA+I+ VG      I++A  +K  + S  D
Sbjct: 826  VRRMGIKVLPPDVNQSYGVFAPDGNDIRFGLASIRNVGENVVAEIIKARQEKGAYTSFSD 885

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F  +V ++  N+R + SL+ AGA D FG  R  L    +   +     ++  +N   ++F
Sbjct: 886  FLKKVPAEVCNKRTIGSLIKAGAFDAFGAPRSALTAIHEQAVEAVVSTKRQESNGQFDLF 945

Query: 928  A--HEKGTFSDKITLEKFSVE---------NSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            A    +GT S    L   S++         N  + FE E  +LG Y S HPL     +L 
Sbjct: 946  AALEMEGTESPDNLLGSASIDIPDISEWPKNELLAFERE--MLGMYVSDHPLSGMNRVLE 1003

Query: 977  KMGIKGYEESVATI-----RGNN--IRLAAMVVSKQQK-KTRKGSRIGWVTFSEPAKEYE 1028
             +     E+ +  +     +GN+  +++A +V +   K   R G +       +     E
Sbjct: 1004 GLA----EDRIVDLTSDEGKGNDSPVKIAGLVTAVNVKISKRSGQQWAIAKIEDMTGSVE 1059

Query: 1029 ANFF 1032
              FF
Sbjct: 1060 VLFF 1063


>gi|304389308|ref|ZP_07371273.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii
            subsp. curtisii ATCC 35241]
 gi|304327426|gb|EFL94659.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii
            subsp. curtisii ATCC 35241]
          Length = 1225

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 379/1084 (34%), Positives = 581/1084 (53%), Gaps = 82/1084 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VH+ YS+L+GA  +  ++ K   +QQ A+AITD   LF A EF Q+   AGI
Sbjct: 3    SSEFVHLHVHTDYSILDGAAKIKRLVAKAVENQQKAVAITDHGYLFGAFEFYQECRNAGI 62

Query: 68   QPIIGCQLDID-----------MQDNLKMTNQGK--TPFPTVPSIVLLVSTAEGYQRLIE 114
            +PIIG +  +                L+    G   +       + LL  T EG   L  
Sbjct: 63   KPIIGLEAYVTPGTSRFDTTRVQWGTLEQQKAGDDVSARGAYTHMTLLSHTTEGMHNLFR 122

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S   L  Q  +  R     L+    EGLI   G  SG +         Q A +     
Sbjct: 123  LGSYASLDGQMGKWPRADRELLERY-HEGLIGTAGCPSGEVQTRLRLGQYQEAVRAAGEL 181

Query: 175  KKLFG-DRLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            + +FG D  YV L  H     +R R+  +++LA     P++ATN+S ++ +ED E  D +
Sbjct: 182  QDIFGKDYFYVELMDHGLSIENRVRKD-LLRLAREINAPIIATNDSHYVYKEDREIQDAM 240

Query: 232  MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCS--FILQVH 288
            + +     +S  DR R    D+YL+   EM  +F+++PEAL+NT+ IA +C+  F     
Sbjct: 241  LCINSGDRLSNPDRFRFDGTDYYLRPSEEMHELFAEIPEALDNTLLIAEQCNVEFPDVKE 300

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +P F     +D    E +    +   GL+ R   G       +++ R+R D+E+ +I
Sbjct: 301  GTFMPVFPVPAGED----EVSWFIKEVERGLQYRFPNGI------SEEVRKRADYEVEII 350

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F  YFLIV+D+IQWAK N I VGPGRGSGAGS+ AYA+ ITD+DP++  LLFERFL
Sbjct: 351  VQMGFPSYFLIVSDYIQWAKDNGIRVGPGRGSGAGSMVAYAMRITDLDPIKHGLLFERFL 410

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DF   RR +VI YV  KYG ++V+Q++T+G++++K AL+D  R     
Sbjct: 411  NPERVSMPDIDVDFDDRRRQDVIDYVTRKYGKDKVSQVVTYGTIKSKQALKDAARISGAD 470

Query: 469  YSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
            +S+ ++L K +P              +P HP   +A      FR+    DP   ++ +++
Sbjct: 471  FSKGEKLTKAMPPAVMGKDIPLSGMYNPQHPRYKEA----EEFRKVVAEDPFNRQIFDLA 526

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
              +EG+ R    HA  +++    L+ ++PM +  +    +TQF+    E  GL+K DFLG
Sbjct: 527  AGVEGMVRQWGVHACAVIMSRETLTDVIPMMKRPQDGAMITQFDYPTCEHLGLLKMDFLG 586

Query: 576  LKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            LK LT++  +LD +   G    DL  +  DD  TY LL+T  TLG+FQL+  GMR  L+ 
Sbjct: 587  LKNLTIISDALDNIKINGKTPPDLERLDVDDKATYELLSTGETLGVFQLDGGGMRTLLKQ 646

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGV 688
            ++P   +DI ALV+LYRPGP+  ++   Y  RKNG +KI  IH  ++  LK+    T G+
Sbjct: 647  LRPTEFDDISALVALYRPGPMGANSHTNYAFRKNGLQKIEPIHSELEEPLKDILGYTYGL 706

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            IIYQEQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G  ++G S+     
Sbjct: 707  IIYQEQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMIEHGYSEDCCET 766

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++ +L  FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + D  +K+  +  +
Sbjct: 767  LWGILVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQTDK-DKLGMYLNE 825

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLED 867
             R+  I+++PP VN     F    N I + LA+I+ VG      I++A  +K  + S  D
Sbjct: 826  VRRMGIKVLPPDVNQSYGVFAPDGNDIRFGLASIRNVGENVVAEIIKARQEKGAYTSFSD 885

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F  +V ++  N+R + SL+ AGA D FG  R  L    +   +     ++  +N   ++F
Sbjct: 886  FLKKVPAEVCNKRTIGSLIKAGAFDAFGAPRSALTAIHEQAVEAVVSTKRQESNGQFDLF 945

Query: 928  A--HEKGTFSDKITLEKFSVE---------NSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            A    +GT S    L   S++         N  + FE E  +LG Y S HPL     +L 
Sbjct: 946  AALEMEGTESPDNLLGSASIDIPDISEWPKNELLAFERE--MLGMYVSDHPLSGMNRVLE 1003

Query: 977  KMGIKGYEESVATI-----RGNN--IRLAAMVVSKQQK-KTRKGSRIGWVTFSEPAKEYE 1028
             +     E+ +  +     +GN+  +++A +V +   K   R G +       +     E
Sbjct: 1004 GLA----EDRIVDLTSDEGKGNDSPVKIAGLVTAVNVKISKRSGQQWAIAKIEDMTGSVE 1059

Query: 1029 ANFF 1032
              FF
Sbjct: 1060 VLFF 1063


>gi|21702583|gb|AAM75980.1|AF481102_16 DNA polymerase alpha subunit [Candidatus Tremblaya princeps]
          Length = 1083

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 355/995 (35%), Positives = 550/995 (55%), Gaps = 55/995 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL++HS YS+ +G + + + ++   AD Q ++A+TD NN+F A++F + A  +G++PI
Sbjct: 18  FVHLRMHSEYSMHDGMVRVEDAVNAARADMQCSLALTDLNNVFGAVKFYKAAVRSGVKPI 77

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +GC L +            +  F    S++ L  +  GY+ +  +++  +         R
Sbjct: 78  VGCHLLL------------RGAFGDTSSVLALARSGGGYRNMCRILTAAWSDAATCVEAR 125

Query: 131 ICLSWLQEIGT----EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
           + + WL   G+    +G+++L+G   GPI R     +   A + +  +  +     Y+ L
Sbjct: 126 VDMRWLA--GSPRILKGIVVLSGALDGPIGRHIIEGNYSAARRSVDDWLTMTQGSFYLEL 183

Query: 187 QR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           QR  H G + Y   + ++L+    +P+VAT+   F++  DY  H V   +A  T+ S+  
Sbjct: 184 QRSGHSGTETYVH-RALELSMYSMVPVVATHPIQFIAPSDYPLHCVRCGMAAGTLGSRAT 242

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDI 303
               T + + K+R  M  IF D+P A+ NT  IAR C+  + +     P F +   C+  
Sbjct: 243 -GMFTREQHFKSRESMSRIFRDIPSAISNTCAIARMCNLDMDIGRLRRPVFAVCSPCN-- 299

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ-DYRQRLDFELNVIARMKFSGYFLIVAD 362
              E + L     +GL  R+  G + +    + +Y  R+  E  ++A M F GYFLIV+D
Sbjct: 300 ---EASALACTLGSGLRSRIMDGRMPRFTGTRREYAARIREEYRIVAGMGFCGYFLIVSD 356

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           F+ WA+   IPVG GRGSGAGS+ AY L ITDIDP++  LLFERFLNP+R++MPD DIDF
Sbjct: 357 FVGWARARGIPVGSGRGSGAGSLMAYVLGITDIDPIQHGLLFERFLNPERVTMPDLDIDF 416

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           CQ+ RD V++YV+ +Y +  VAQI TFG++ A+A++R+  RA+ + Y+  D + +L+P  
Sbjct: 417 CQEGRDRVVQYVRRRYSNGSVAQITTFGTMAARASVREAARAMGVSYTLADSIARLVPIR 476

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
           P   V++     + R   +R A     RLL + + ++EGL R+ + HA GI+I    +  
Sbjct: 477 PGARVTIPNSLKEVRMLRSRYASEGDVRLLIDTASRMEGLVRNMAVHAGGIIISPADIQD 536

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
           L P+Y+   S +PV+Q +    E  GL+KFDFLGL TLT+L  +   +   G  V    +
Sbjct: 537 LCPLYQQAGSIVPVSQLDKDDAESLGLVKFDFLGLTTLTILSCAARCVVGTGRAVSQHSL 596

Query: 602 --PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             P  D  T+ LL    T+ +FQLE  GM++AL    PD + DIIAL+SLYRPGP+  + 
Sbjct: 597 CGPPCDSATFGLLQAADTVAVFQLEGIGMQEALRITVPDRLGDIIALISLYRPGPMRLVR 656

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            Y  RK+G E    +   + P+L ET GV++YQEQVM+IAQ + GY+  EAD+LRR M +
Sbjct: 657 SYCRRKHGVEAAFVVDERLLPILGETYGVMVYQEQVMRIAQAMGGYTPGEADLLRRVMSR 716

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K   +M   +  F++GAS+ GI  + AV +FE + KFA YGFNKSHAAAYA +SYQTAW+
Sbjct: 717 KQPRDMAAHRISFVNGASRLGIGGSSAVAVFEHIKKFASYGFNKSHAAAYATMSYQTAWV 776

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------GD 832
           K  +PV+F+AA+M+  + + ++++    D  +  + +  P VN P   F         G 
Sbjct: 777 KARHPVDFMAANMSGSLRDYDRLRLLRLDCARRGVPLRAPDVNRPSYRFTPISCYGSEGH 836

Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L A+K  G    R I     D+PF SL DF +R++S+ + R  +E L+ AGA D
Sbjct: 837 GYIVYGLGAVKCGGEAVVRDIARCREDRPFRSLYDFLARINSRIVKRSAVECLIKAGAFD 896

Query: 893 CF-GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
           C  G +R  +L  L    +          ++HE      +     + T     +  S+ R
Sbjct: 897 CKPGGARATMLAVLPAAMR----------DRHEPTALLWR---IQQPTSAACLIAASAWR 943

Query: 952 F--ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
           F  ++E   LG+YFS HP    +   R +   G +
Sbjct: 944 FAVQHESEALGYYFSIHPFSRCRGAARSIAAMGID 978


>gi|315656561|ref|ZP_07909448.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii
            subsp. holmesii ATCC 35242]
 gi|315492516|gb|EFU82120.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii
            subsp. holmesii ATCC 35242]
          Length = 1226

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 379/1084 (34%), Positives = 581/1084 (53%), Gaps = 82/1084 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VH+ YS+L+GA  +  ++ K   +QQ A+AITD   LF A EF Q+   AGI
Sbjct: 3    SSEFVHLHVHTDYSILDGAAKIKRLVAKAVENQQKAVAITDHGYLFGAFEFYQECRNAGI 62

Query: 68   QPIIGCQLDID-----------MQDNLKMTNQGK--TPFPTVPSIVLLVSTAEGYQRLIE 114
            +PIIG +  +                L+    G   +       + LL  T EG   L  
Sbjct: 63   KPIIGLEAYVTPGTSRFDTTRVQWGTLEQQKAGDDVSARGAYTHMTLLSHTTEGMHNLFR 122

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S   L  Q  +  R     L+    EGLI   G  SG +         Q A +     
Sbjct: 123  LGSYASLDGQMGKWPRADRELLERY-HEGLIGTAGCPSGEVQTRLRLGQYQEAVRAAGEL 181

Query: 175  KKLFG-DRLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            + +FG D  YV L  H     +R R+  +++LA     P++ATN+S ++ +ED E  D +
Sbjct: 182  QDIFGKDYFYVELMDHGLSIENRVRKD-LLRLAREINAPVIATNDSHYVYKEDREIQDAM 240

Query: 232  MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCS--FILQVH 288
            + +     +S  DR R    D+YL+   EM  +F+++PEAL+NT+ IA +C+  F     
Sbjct: 241  LCINSGDRLSNPDRFRFDGTDYYLRPSEEMHELFAEIPEALDNTLLIAEQCNVEFPDVKE 300

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +P F     +D    E +    +   GL+ R   G       +++ R+R D+E+ +I
Sbjct: 301  GTFMPVFPVPAGED----EVSWFIKEVERGLQYRFPNGI------SEEVRKRADYEVEII 350

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F  YFLIV+D+IQWAK N I VGPGRGSGAGS+ AYA+ ITD+DP++  LLFERFL
Sbjct: 351  VQMGFPSYFLIVSDYIQWAKDNGIRVGPGRGSGAGSMVAYAMRITDLDPIKHGLLFERFL 410

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DF   RR +VI YV  KYG ++V+Q++T+G++++K AL+D  R     
Sbjct: 411  NPERVSMPDIDVDFDDRRRQDVIDYVTRKYGKDKVSQVVTYGTIKSKQALKDAARISGAD 470

Query: 469  YSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
            +S+ ++L K +P              +P HP   +A      FR+    DP   ++ +++
Sbjct: 471  FSKGEKLTKAMPPAVMGKDIPLSGMYNPQHPRYKEA----EEFRKVVAEDPFNRQIFDLA 526

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
              +EG+ R    HA  +++    L+ ++PM +  +    +TQF+    E  GL+K DFLG
Sbjct: 527  AGVEGMVRQWGVHACAVIMSRETLTDVIPMMKRPQDGAMITQFDYPTCEHLGLLKMDFLG 586

Query: 576  LKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            LK LT++  +LD +   G    DL  +  DD  TY LL+T  TLG+FQL+  GMR  L+ 
Sbjct: 587  LKNLTIISDALDNIKINGNTPPDLERLDVDDKATYELLSTGETLGVFQLDGGGMRTLLKQ 646

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGV 688
            ++P   +DI ALV+LYRPGP+  ++   Y  RKNG +KI  IH  ++  LK+    T G+
Sbjct: 647  LRPTEFDDISALVALYRPGPMGANSHTNYALRKNGLQKIEPIHSELEEPLKDILGYTYGL 706

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            IIYQEQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G  ++G S+     
Sbjct: 707  IIYQEQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMIEHGYSEDCCET 766

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++ +L  FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + D  +K+  +  +
Sbjct: 767  LWGILVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQTDK-DKLGMYLNE 825

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLED 867
             R+  I+++PP VN     F    N I + LA+I+ VG      I++A  +K  + S  D
Sbjct: 826  VRRMGIKVLPPDVNQSYGVFAPDGNDIRFGLASIRNVGENVVAEIIKARQEKGAYTSFSD 885

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F  +V ++  N+R + SL+ AGA D FG  R  L    +   +     ++  +N   ++F
Sbjct: 886  FLKKVPAEVCNKRTIGSLIKAGAFDAFGAPRSALTAIHEQAVEAVVSTKRQESNGQFDLF 945

Query: 928  A--HEKGTFSDKITLEKFSVE---------NSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            A    +GT S    L   S++         N  + FE E  +LG Y S HPL     +L 
Sbjct: 946  AALEMEGTESPDNLLGSASIDIPDISEWPKNELLAFERE--MLGMYVSDHPLSGMNRVLE 1003

Query: 977  KMGIKGYEESVATI-----RGNN--IRLAAMVVSKQQK-KTRKGSRIGWVTFSEPAKEYE 1028
             +     E+ +  +     +GN+  +++A +V +   K   R G +       +     E
Sbjct: 1004 GLA----EDRIVDLTSDEGKGNDSPVKIAGLVTAVNVKISKRSGQQWAIAKIEDMTGSVE 1059

Query: 1029 ANFF 1032
              FF
Sbjct: 1060 VLFF 1063


>gi|325102919|ref|YP_004272573.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145]
 gi|324971767|gb|ADY50751.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145]
          Length = 1454

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 371/1077 (34%), Positives = 563/1077 (52%), Gaps = 89/1077 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------SQKACA 64
            FVHL  H+ +S+L+   S+  ++     ++  A+AITD  N+  A  F        K+  
Sbjct: 258  FVHLHNHTQFSILQSTTSIAELVKAAVKNKMQAVAITDHANMMGAFHFVNNVLNHNKSAQ 317

Query: 65   AG---------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
            A                I+PI+GC+  +   DN K     KT       IVLL     GY
Sbjct: 318  AKNTEAEEKGETPTEQIIKPILGCEFFV--CDNHK----DKTRKDNGYQIVLLAKNKNGY 371

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L ++ S  Y    G   V      + E   E +I+L+G   G I           AE 
Sbjct: 372  HNLAKMSSLAYT--DGFYYVPRIDRAIVEKYKEDIIVLSGNLYGEIPNKILNVGEIQAED 429

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             L+ +K  F D  Y+ + RH   D  R +Q +++LA  H++ L+ATNN+ +++++D  AH
Sbjct: 430  ALIWWKNTFKDDFYIEVMRHGQEDENRVNQTLIKLARKHQVKLIATNNTYYINKKDAHAH 489

Query: 229  DVLMAVAHSTVVSQK-DRPR------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            D+L+ V     ++    R R         ++Y K++ EM  +F DLPEA+ N  EI  + 
Sbjct: 490  DILLCVKDGEKINTPIGRGRGFRFGMPNQEYYFKSQDEMKKLFQDLPEAIVNIQEIVDKI 549

Query: 282  SFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
                     +LP+F         E E D  ++ E   L +    G + R  +        
Sbjct: 550  EIFKLQRDVLLPKFDIPEEFQVAEDEIDGGKRGENKYLHHLTYEGAKRRYPE-------I 602

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
             Q+ R+RLDFEL  I R  + GYFLIV DFI+ A+   + VGPGRGS AGS  AY L IT
Sbjct: 603  TQEIRERLDFELATIERTGYPGYFLIVQDFIKAARDMGVSVGPGRGSAAGSAVAYCLGIT 662

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            ++DP+ + LLFERFLNPDR+SMPD DIDF  + R +V++YV +KYG  +VAQIIT+G++ 
Sbjct: 663  NLDPIAYDLLFERFLNPDRVSMPDIDIDFDDEGRGDVMKYVIDKYGANQVAQIITYGTMA 722

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLADP--SVD 509
            AK+++RD  R L +P  + D++ KLIPN     + L  I   DD   R    ++    V 
Sbjct: 723  AKSSIRDTARVLDLPLFEADKIAKLIPN-----LKLNKIFNMDDQALRSVLRSEELEGVQ 777

Query: 510  RLLEIS-------------QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +L E++             + LEG  R+   HA G++I    ++  VP+     SDL VT
Sbjct: 778  QLKELASGSDLSAETIQQAKVLEGSVRNTGIHACGVIITPDDITNFVPVSIAKDSDLYVT 837

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTK 615
            QF+   +E AGL+K DFLGLKTLTL++ ++  +  R G+++D    P DD +TY L    
Sbjct: 838  QFDNSVVESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIELDPDKFPIDDVKTYELFQRG 897

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
             T+GIFQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RKNG+E I    
Sbjct: 898  ETVGIFQYESPGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEPITYDL 957

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               +  LKET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK K+ +DK K +FI  
Sbjct: 958  DACEEYLKETYGITVYQEQVMLLSQKLANFTKGEADVLRKAMGKKQKDVLDKMKPKFIKQ 1017

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A +NG  + +   I++    FA Y FNKSH+  YA ++YQTA++K HYP E++AA ++  
Sbjct: 1018 AGENGHDEKVLEKIWKDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMAAVLSNN 1077

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIM 854
            M++++++  F ++ ++  ++++ P VN     F V D   I + + AIKGVG      I+
Sbjct: 1078 MNDIKQVTFFMEECKRMGLEVLSPDVNESFYKFTVNDKYAIRFGMGAIKGVGAGAVETII 1137

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LD 906
            E      + S+ D   R+D +  N++  E+L+ AG  DCF G  R Q           ++
Sbjct: 1138 ENRKSGQYKSIFDLAKRIDLRAANKKAFENLILAGGFDCFEGTHRAQYFFDDGDGSILME 1197

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
               KY    ++N  +   ++F         + TL       +  +   E+ V+G Y SGH
Sbjct: 1198 KAIKYGAKYKENENSSQASLFGGGSAVEIPEPTLPACDEWGTMEKLAKEKDVVGIYISGH 1257

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGN---NIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            PLD YK +L K    G       I        ++  +V S +   T+ G   GW  F
Sbjct: 1258 PLDDYKFVLEKYCSAGNLNIFNDIDKGLDFQFKVGGIVSSVRHMVTKDGR--GWAFF 1312


>gi|288929494|ref|ZP_06423338.1| DNA polymerase III, alpha subunit [Prevotella sp. oral taxon 317 str.
            F0108]
 gi|288328999|gb|EFC67586.1| DNA polymerase III, alpha subunit [Prevotella sp. oral taxon 317 str.
            F0108]
          Length = 1249

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 381/1121 (33%), Positives = 590/1121 (52%), Gaps = 105/1121 (9%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------- 58
            +K   FVHL VH+ YS+L+G  S+  ++DK  A+    +A+TD  N+F   EF       
Sbjct: 13   DKMEDFVHLHVHTYYSILDGQSSIQRLVDKAIANGMGGMALTDHGNMFGTKEFFNYCKKV 72

Query: 59   SQKACAAGI---QPIIGCQLDI-------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
            + K    G+   +PIIGC++ +        +++N  M+            +++L     G
Sbjct: 73   NGKRKEEGLPEFKPIIGCEMYVARHRKTDKVKENGDMSGY---------HLIVLAKNYTG 123

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
            Y+ L +LVSR ++ D      R     L E   EGLI+ +   +G + R    N  + A 
Sbjct: 124  YKNLTKLVSRAWV-DGYYMRPRTDREDL-ETYHEGLIVCSACIAGEVPRKILRNDIEGAR 181

Query: 169  KRLLTFKKLFGDRLYVNLQRHRGYDRY------------RESQV-VQLAYTHELPLVATN 215
            +    + ++FGD  Y+ LQRH   D +            R ++V +++A    + +V TN
Sbjct: 182  EAAQWYHRVFGDDYYLELQRHEVKDPHIRANREAFPLQQRANKVMLEMAEEMGIKVVCTN 241

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            ++ F+ +E+ EAHD L+ ++    +    R   +   + K R EM  +F DLP+A+ NTV
Sbjct: 242  DAHFVDQENAEAHDHLLCLSTGKDLDDPTRMLYSKQEWFKTREEMNEVFGDLPQAMRNTV 301

Query: 276  EIARRCSFILQVHAPILP----------------RFIEKECDDIQKEEEN---------- 309
            EI  +       H+PI+P                R  EKE  D    +EN          
Sbjct: 302  EILNKVETYSIDHSPIMPFFPIPEDFGTEEQWRQRISEKELYDEFTSDENGQNQLPPEEG 361

Query: 310  ELRNKAVAGLE------------VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFS 354
            E + K + G E             +LA     K Y     ++ R+R++FEL+++  M F 
Sbjct: 362  EEKIKKLGGYEKLYRIKFEADYLAKLAYDGAKKLYGEPLTEEVRERVNFELHIMKTMGFP 421

Query: 355  GYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
            GYFLIV DFI  A+   ++ VGPGRGS AGSV AY L IT IDP+++ LLFERFLNPDR+
Sbjct: 422  GYFLIVQDFINTAQNELDVMVGPGRGSAAGSVVAYCLGITKIDPIKYDLLFERFLNPDRI 481

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            S+PD D DF  D R  V+ +V++KYGH++VA IIT+G++  K +++DVGR  ++P   V+
Sbjct: 482  SLPDIDTDFDDDGRGRVLEWVEDKYGHDKVAHIITYGTMATKNSIKDVGRVEKVPLKIVN 541

Query: 474  RLCKLIPNDPAHPVSL---QAIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHA 529
             LCKLIP+     + +    AI      REA   AD  +   +  ++ LEG  R    HA
Sbjct: 542  DLCKLIPDKLPDGLKMSVANAIKAIPELREAEASADEGLRNTMMYAKMLEGTVRGTGIHA 601

Query: 530  AGIVIGDRPLSQLVPMYR-----DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             G +I    +S  VP+       D    L  TQ++   IE+ GLIK DFLGLKTL++L++
Sbjct: 602  CGTIICRDAISDWVPVSTAEDKADPGHKLLCTQYDGHVIEETGLIKMDFLGLKTLSILKE 661

Query: 585  SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +++ +    G  ++L  IP DD  TY L     T+G FQ ES+GM++ L  +QP   ED+
Sbjct: 662  AVENVRLSTGKTINLEEIPIDDPLTYKLYCEGRTIGTFQFESAGMQKYLRELQPTVFEDL 721

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            IA+ +LYRPGP+D I  +  RK    ++    P ++  LK+T G+ +YQEQVM +++ L+
Sbjct: 722  IAMNALYRPGPMDYIPEFIARKRDPSRVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLA 781

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
             ++  ++D LR+AMGKK+  +MDK +  F  G  KNG  K +   I+E   KFA Y FNK
Sbjct: 782  NFTRGQSDTLRKAMGKKLIAQMDKLETLFYEGGMKNGHPKEVLNKIWEDWKKFASYAFNK 841

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHA  Y+ +++QTA+ K HYP E++AA M+  + N+ +I KF  + R   I+ + P VN 
Sbjct: 842  SHATCYSWVAFQTAYFKAHYPAEYMAAVMSRNLANISEITKFMDECRVMGIKTLGPDVNE 901

Query: 824  PCVDFKVGDN-RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRV 881
              + F V  +  I + LAAIKG+G   A+ I+ E   + P+ S+ D   RV+   +N++ 
Sbjct: 902  SRLKFSVNKHGEIRFGLAAIKGMGDAAAQAIIQEREKNGPYTSVFDMVQRVNLSSVNKKA 961

Query: 882  LESLVFAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            +ESL  +G  D  G +R   L +       +DN+ +Y Q  +  +     ++F       
Sbjct: 962  IESLALSGGFDSLGIARENYLGTDSKGATFIDNLTRYGQLFQMEQQQMQNSLFGASNAVE 1021

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM---GIKGYEESVATIR 991
                 + +    +S  R   E+ ++G Y S HPLD YK +L+ M   G    E+ +A ++
Sbjct: 1022 VSTPPVPQAERWSSIERLNKERDLVGIYLSAHPLDDYKIVLQSMCNTGCNELEDRMALVQ 1081

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               + LA MV + +   T+ G   G+VT  + +   E  FF
Sbjct: 1082 KAEVTLAGMVTNTRSAVTKTGKPCGFVTIEDYSGSGELAFF 1122


>gi|212638343|ref|YP_002314863.1| DNA polymerase III subunit alpha [Anoxybacillus flavithermus WK1]
 gi|212559823|gb|ACJ32878.1| DNA polymerase III, alpha subunit [Anoxybacillus flavithermus WK1]
          Length = 1077

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 369/1036 (35%), Positives = 577/1036 (55%), Gaps = 89/1036 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF+HLQV S YSLL   + +  ++ +    Q PAIA+TD N L+  + F +   A GI+P
Sbjct: 6    SFIHLQVRSGYSLLSSTVKIEELVTRARELQFPAIALTDENVLYGVMPFYEACQAHGIKP 65

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    I       M   G         +VLL    +GY++L+ + + +   D GK   
Sbjct: 66   IIGMMATI-------MDEHGHPD-----QLVLLAKNNDGYRQLVHIATAIQTND-GKGIS 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQ 187
             +  S      T  LI +T G  G +++       + AE  + T+ KLF  GD  Y+N+Q
Sbjct: 113  LLDFSH----HTSELIGMTSGVYGRVEQHLLNGEIEQAEAIVQTYAKLFQRGD-FYINVQ 167

Query: 188  RHRGYDRYRESQVVQLAYTH----ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            RH       +  ++ L + H    ++PLVATN+  ++ +ED  A + L+A+ H   +   
Sbjct: 168  RH---GLQEQEHLLSLLFEHSKRWDIPLVATNDVRYIYKEDTLAFECLLAMKHGKKMVDP 224

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +RPR+ T +++LK+  EM ++FS+  EA+E TV IA+RC    +     +PR+       
Sbjct: 225  NRPRLATNEYHLKSAHEMAALFSNGYEAVEETVRIAQRCHVTFESKRWFMPRYPVPSG-- 282

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              K  +  L+         R      A       Y  RL +EL +I +M FS YFLIVAD
Sbjct: 283  --KTADEYLQTWCWEQFTKRFPDRPKA-------YVARLQYELQIIQQMNFSDYFLIVAD 333

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            F+++A++  I  GPGRGS AGS+ AY L IT +DPL++ LLFERFLNP R+S+PD DIDF
Sbjct: 334  FVRFARERGILTGPGRGSAAGSIVAYILGITQVDPLQYGLLFERFLNPARLSLPDIDIDF 393

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              DRR+EVIRY++ KYG + VAQI+TFG+   ++A+R+VGR   +               
Sbjct: 394  PDDRREEVIRYIEQKYGTDHVAQIVTFGTFGMRSAIREVGRVFDV--------------- 438

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLE---ISQKLEGLYRHASTHAAGIVIGDRPL 539
                        D R  +  LA  S DR      ++Q++EGL +H S HAAGIVI  RPL
Sbjct: 439  ------------DEREIQQTLATGSFDRTRPWHYVAQRIEGLPKHTSVHAAGIVISPRPL 486

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
            + ++P+ +  ++   VTQ+ M  +E+ GL+KFD L LK LT++++ +  + QR G ++  
Sbjct: 487  TDIIPL-QSGQTTTYVTQYAMDALERLGLLKFDLLALKNLTMIEQMIQSIEQRTGHRLSF 545

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD +TY LL+   T G+FQLES GM++ L  +QP   EDI+A+ +L+RPGP++ I
Sbjct: 546  ENMPIDDQKTYALLSRGDTFGVFQLESEGMKRILRELQPTTFEDIVAVNALFRPGPMEQI 605

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  RK+G+E I  +H  +  +L+ T GVI+YQEQ+M+IA+ ++ +SL++AD+LRRA+ 
Sbjct: 606  PTYIARKHGREPIRYMHDDLQSILQSTYGVIVYQEQIMKIAEQMAKFSLAQADLLRRAIS 665

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK   +M+K+K+ FI G  +NG    +A  ++EL+ +FA YGFN+SHA AY+ I+Y  A+
Sbjct: 666  KKDVGQMEKEKKHFIEGCIQNGYDAHLANELYELIVRFAGYGFNRSHAVAYSYIAYMLAY 725

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K HYP++F AA +T      EK+ +   + R   I+++PPS+      F V DN I + 
Sbjct: 726  IKAHYPLDFYAAVLTNVSGQKEKMMQCVHELRSKKIRLLPPSIARSEGHFTVDDNGIRFG 785

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L AIK V     + ++     +PF    DF SR+  +   ++V+E+L+F+G  D F   R
Sbjct: 786  LLAIKQVNAAFVKQMVRERQKRPFSDFFDFVSRLRMESSQKKVIEALIFSGCFDEFHIER 845

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              L  S+D   ++A+ +         N   H +  +   +  E  S+ +   + + E++ 
Sbjct: 846  ATLYASIDVAIEHAELM---------NFSLHVQPKY---VHAEPLSLID---QLKYEKQW 890

Query: 959  LGFYFSGHPLDVYKPILRKMGIKG-YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            L  Y S HP++ +       G K  YE +   +  N+ ++   V    +K+T+KG  + +
Sbjct: 891  LNVYVSPHPVESFSHFYSMWGAKRMYEWTKENV--NHGKVIVYVEEVTRKRTKKGEEMAF 948

Query: 1018 VTFSEPAKEYEANFFP 1033
            VT  + + E++A  FP
Sbjct: 949  VTICDDSDEWQAVVFP 964


>gi|325849029|ref|ZP_08170521.1| DNA polymerase III, alpha subunit [Anaerococcus hydrogenalis
            ACS-025-V-Sch4]
 gi|325480274|gb|EGC83337.1| DNA polymerase III, alpha subunit [Anaerococcus hydrogenalis
            ACS-025-V-Sch4]
          Length = 1149

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 361/1063 (33%), Positives = 580/1063 (54%), Gaps = 65/1063 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + +F HL +H+ YSLL+G   ++ +++K+   +  + AITD  N++  +EF +K    GI
Sbjct: 2    TNNFTHLHLHTEYSLLDGFTKIDKLMEKLKEYKMNSCAITDHGNMYGVIEFYKKCQDNGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC++ +   D+     Q K  +     ++LL     GYQ LI++VS+ Y  +    
Sbjct: 62   KPIIGCEVYVSDNDHKIKNPQNKRYY----HLILLAKNNRGYQNLIKIVSKAYT-EGFYY 116

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              RI    L+E   + +I L+   +G I++    N  + A +    +  LFG +  Y+ +
Sbjct: 117  KPRIDFEVLEEY-KDDIIALSACLNGEINQRILENDIEKAYQTAQKYLDLFGRENFYLEI 175

Query: 187  QRHRGYDRYRESQVVQ--LAYTHE---LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Q H      +E ++V   L   HE   + +V TN+  ++ + D    DVL  +   +++ 
Sbjct: 176  QNHG----LKEQKIVNQNLLKIHEDLKIEMVCTNDVHYVEKNDAFYQDVLSCIQTGSLLE 231

Query: 242  QKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             + R ++  D  YLK++  M  IF D P A EN+ +IA  C+  L+ H P LP F     
Sbjct: 232  DEKRMKMPCDEFYLKDQQMMKEIFKDFPRAYENSQKIADMCNVKLEFHNPHLPYF----- 286

Query: 301  DDIQKEEENELRNKAVAGLEV--RLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGY 356
                K  EN      +  L+    L    +AK Y   D +  +R + E++VI  M +  Y
Sbjct: 287  ---TKVPEN------MTNLDYLKYLVNKGLAKKYGKVDEKIQKRAEKEISVINNMGYVDY 337

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV DF+++AK N I VGPGRGS AGS+ +YAL IT IDP++++LLFERFLNP+R+SMP
Sbjct: 338  FLIVWDFVRYAKDNKIAVGPGRGSAAGSIISYALDITQIDPIKYNLLFERFLNPERVSMP 397

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D DIDFC + RD V+ YV + YG + V+QI+TFG ++A+ A+RDVGR + + + +VD++ 
Sbjct: 398  DIDIDFCYENRDRVVDYVYDLYGKDHVSQIVTFGRMKARNAIRDVGRVMDISFKKVDKIA 457

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP      +  +A+ +  +       D    R+++ ++ +E L RH S HAAG+VI  
Sbjct: 458  KLIPQAIGMTID-KALENTEKLAYEYENDVETKRMIDTARNIENLPRHTSIHAAGVVISK 516

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVK 595
              L+ +VP+   + +D  VTQFNM  IE+ GL+K DFLGL+ LT++Q ++ D    + + 
Sbjct: 517  EILTDIVPLA--LSNDQIVTQFNMTEIEELGLLKMDFLGLRNLTVIQDTIKDVKKYKNID 574

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            ++L  I  +D +         T+GIFQ ES+GMR  L+ ++P   +D++A  SL+RPGP+
Sbjct: 575  INLDNIDENDPKVLDQFRKAETIGIFQFESAGMRNFLKNLKPTRFDDLVAANSLFRPGPM 634

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  Y   K   + I  I   + P+L+ T G+I+YQEQVMQI Q L+G+SL EAD LRR
Sbjct: 635  DQIPNYIKNKMYPQNISYIDQSLKPILEVTYGIIVYQEQVMQIVQQLAGFSLGEADNLRR 694

Query: 716  AMGKKIKEEMDKQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNK 763
            AM KK    M+  +E F+ G               NGIS+  A  I++ +  FA Y FNK
Sbjct: 695  AMSKKKMSVMEANREIFVHGKKDEKGNYEVLGCVNNGISEQNANKIYDEMISFAKYAFNK 754

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAY++++ QTA++K ++  E++A  +T  M +  K+  +  +A++  I+I+PP +N 
Sbjct: 755  SHSAAYSLVAIQTAYLKCYFKEEYMANLLTSIMGDSSKVYLYISEAKRLGIEIVPPDINK 814

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK---LNRR 880
                F    N+I + ++AIK VG      I++   +K + + +DF  R++S     LN++
Sbjct: 815  SERRFIAEKNKIIFGMSAIKNVGDNLIDLIVKIRDEKIYKTFKDFLERIESNDPTALNKK 874

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKI 938
             LESL+ +GA D  GY R +L+   +   +     EK       N+  F  +     D I
Sbjct: 875  ALESLIKSGAFDSLGYKRSELIAVHETALQSIHDNEKVNLKGQMNLLDFDQKDQNEEDDI 934

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------- 991
                 +   +  +   E+ VLGFY S HPL+     ++K       E ++ +R       
Sbjct: 935  KFPPVNEYKNKQKLSLEKEVLGFYISDHPLNSLGDRVKKY-TNFSTEILSELRPIDLDKY 993

Query: 992  -GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                + +A ++ +K +  T+K + + + T  +     E   FP
Sbjct: 994  DNKEVVMAGVITNKSETMTKKNTLMAFSTLEDMYGSIEMIIFP 1036


>gi|238917602|ref|YP_002931119.1| DNA polymerase III subunit alpha [Eubacterium eligens ATCC 27750]
 gi|238872962|gb|ACR72672.1| DNA polymerase III subunit alpha [Eubacterium eligens ATCC 27750]
          Length = 1188

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 361/1081 (33%), Positives = 583/1081 (53%), Gaps = 69/1081 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +  I  +       ++AITD   ++  +EF + A  AGI+P
Sbjct: 2    SFTHLHVHTEYSLLDGSSKIKEITKRAKELGMDSLAITDHGVMYGVIEFYEAAKKAGIKP 61

Query: 70   IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++GC++ +       K   Q +  +     +VLL     GYQ L+++VS+ +  +     
Sbjct: 62   VLGCEVYVAPGSRFDKGAGQSEDKYN---HLVLLAENNTGYQNLMKIVSKGFT-EGFYYK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187
             R+    L+E   EG+I  +   +G + R       + A    L  + +FG    ++ LQ
Sbjct: 118  PRVDKEVLREY-HEGIIATSACLAGEVQRYLSRGMYETARDAALELQDIFGKGNFFLELQ 176

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H      Y   Q++++     + LV TN+  +   +D +AHD+L+ +     +S ++R 
Sbjct: 177  DHGIAEQHYVNPQLMRMHNETGIELVCTNDVHYTYADDVDAHDILLCIQTGKKLSDENRM 236

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC----- 300
            R      YLK+  EM  +F   PEA+ENT +IA RC+  ++     LP F   E      
Sbjct: 237  RYEGGQFYLKSEEEMAELFKYAPEAVENTHKIAERCNVEIEFGVTKLPAFDVPEAYGKNS 296

Query: 301  ---------DDIQKEEEN--------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                     + ++K   +        ++  +A A +        I +   + D  QRL +
Sbjct: 297  WVYLNALCYEGLKKRYPDKTADICIEDIIEQAKASIVADRKDVVIKRAEDSNDIFQRLSY 356

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL+VI  M +  YFLIV D+I +AK ++IPVGPGRGS AGS+ +Y L IT +DP++++L+
Sbjct: 357  ELSVIYSMGYVDYFLIVWDYINYAKTHDIPVGPGRGSAAGSLVSYCLGITTLDPVKYNLV 416

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R+SMPD D+DF  + R +VI YV  KYG E V QIITFG++ A+A ++DVGR
Sbjct: 417  FERFLNPERVSMPDIDVDFAPEGRQKVIDYVIEKYGKECVCQIITFGTMAARAVIKDVGR 476

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPV--SLQAIAD-----DSRFREARLADPSVDRLLEISQ 516
             + +PY+ VD + K+IP      +  ++   AD     ++ F+    AD +V  L++ ++
Sbjct: 477  VMDLPYAMVDNIAKMIPQKVGVTIDSAMNGDADRDIKPNAEFKALYEADETVRDLIDKAK 536

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            +LEGL RHAS HA+G++I  + + + VP+      ++ VTQF    +E  GL+KFDFLGL
Sbjct: 537  RLEGLPRHASVHASGVLISQKDVGEYVPVAVGA-DNVKVTQFEGPTLEHLGLLKFDFLGL 595

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            + LT++Q++     Q      +  IP++D   +  ++     GIFQLES GM+  ++ ++
Sbjct: 596  RNLTVIQQTEKCEQQIDPAFSVDNIPYNDKAVFECISQGKCAGIFQLESGGMKNFMKELK 655

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            PDC+ED+IA +SLYRPGP+D I  Y   K     I    P ++P+L+ T G ++YQEQVM
Sbjct: 656  PDCLEDLIAGISLYRPGPMDFIPQYIKGKENAGNITYECPQLEPILEPTYGCMVYQEQVM 715

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF--------ISGASKNGISKTIAVN 748
            QI + L+GYS   +D +RRAM KK  + M+++++ F        + G  KNGIS+  A  
Sbjct: 716  QIVRDLAGYSWGGSDNVRRAMAKKKLDVMEQERQNFVYGNEANGVPGCIKNGISEQTANK 775

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            I++ +  FA Y FNKSHAA YAV++YQTA++K H+PV+++A  ++   D   K+ ++   
Sbjct: 776  IYDEMMDFAKYAFNKSHAACYAVVAYQTAYLKVHFPVQYMAWLISSVTDKTSKVAEYILA 835

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLED 867
            AR+  I I+P  VN    DF V    I +   A+K +G  T   I+E  + +  F S++D
Sbjct: 836  AREMGISILPVDVNKSVADFGVEGKNIRFGFNAVKSMGRPTITAIIEERTNNGDFHSMQD 895

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F +R+ +  +N+R +E L+ AGA D FG +R  ++   + +   A    K+  +   ++F
Sbjct: 896  FITRM-AGVINKRTVEHLILAGAFDTFGNTRRGMMNVYERMIDSAVKQNKDAISGQMSLF 954

Query: 928  AHEKGTFSDKITLE-------KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK--- 977
              +  +  DK +LE       +F  E+     E E+ VLG Y +GHPLD Y  +  K   
Sbjct: 955  --DFASEEDKQSLEMRVPDIQEFEKED---LLEREKEVLGVYVTGHPLDEYTGMWEKHIS 1009

Query: 978  -----MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   I         + G+   +  ++ + +   T  G ++ ++T  +     E   F
Sbjct: 1010 ARSTDFLIDEETGQAKLMNGSKQTIGGLISNIKVITTGSGQQMAYLTIEDFVGSVEVIMF 1069

Query: 1033 P 1033
            P
Sbjct: 1070 P 1070


>gi|149278873|ref|ZP_01885008.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39]
 gi|149230492|gb|EDM35876.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39]
          Length = 1477

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 369/1100 (33%), Positives = 584/1100 (53%), Gaps = 97/1100 (8%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF---- 58
            Q LE++  F HL  H+ +S+L+  +++  ++   AA + PA+A+TD  N+  A  F    
Sbjct: 254  QELERA-VFAHLHNHTQFSVLQSTINIPALIKATAAAKMPAVAMTDRANMMGAFHFVAQV 312

Query: 59   ----------SQKACAAG-------IQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIV 100
                      +Q A   G       I+PI+GC+  + +  ++ K  + G         +V
Sbjct: 313  INHNKGVDARNQAAIEKGEVPEEVPIKPIVGCEFFVCENHEDKKRKDDGY-------QVV 365

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
             L     GY  L ++ S  Y   +G   V      + E   + +I+L+G   G I     
Sbjct: 366  FLAKNKAGYHNLAKMSSIAYT--KGFYYVPRIDKAVVEQYKDDIIVLSGNLYGEISSKLL 423

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLF 219
                + AE+ LL +K  FG+  YV L RH   D       ++ LA  HE+ L+ATNNS +
Sbjct: 424  NLGEKQAEEALLWWKSQFGEDFYVELMRHSQEDEDIVNVSLMALAKKHEVKLIATNNSYY 483

Query: 220  LSEEDYEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALE 272
            ++++D  AHD+L+ V      +T + +    R      ++Y K+  EM ++F+D+PEA+ 
Sbjct: 484  INKKDANAHDILLCVKDGEKQATPIGRGRGFRYGLPNQEYYFKSPEEMKNLFADVPEAIL 543

Query: 273  NTVEIARRCSFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVRLA 324
            N  E+  +          +LP+F         E E D  ++ E   LR+    G + R  
Sbjct: 544  NIKEVIDKIESYKLAREVLLPKFDIPEEFLVAEDEEDGGKRGENKFLRHLTYVGAKKRY- 602

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                  G    D  +RLDFEL  I +  + GYFLIV DFI  A+  ++ VGPGRGS AGS
Sbjct: 603  ------GEITDDIAERLDFELQTIEKTGYPGYFLIVQDFIAEARNLDVSVGPGRGSAAGS 656

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
              AY L IT+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV  KYG  +VA
Sbjct: 657  AVAYCLGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVIKKYGANQVA 716

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV------SLQAIADDSRF 498
            QIIT+G++ AK++++D  R L +P  + +++ KLIPN     +      +L+       +
Sbjct: 717  QIITYGTMAAKSSVKDTARVLDLPLFEAEKIAKLIPNMKLAKIFNLDEKTLKGALRPDEY 776

Query: 499  R---EARLADPSVD---RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                E ++   + D   + LE +Q LEG  R+   HA G++I    ++  VP+     SD
Sbjct: 777  EKVVELKMLATNNDLGAKTLEQAQILEGSLRNTGIHACGVIITPSDITNFVPVSTAKDSD 836

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611
            L VTQF+   +E AGL+K DFLGLKTLTL++ ++  +  R  + +D    P DD +TY L
Sbjct: 837  LYVTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKLVKFRHNIDLDPDNFPIDDAKTYEL 896

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                 T+GIFQ ES+GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RKNG+E+I
Sbjct: 897  FQRGETIGIFQYESTGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEEI 956

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
                   +  LKET G+ +YQEQVM ++Q L+G++  EADVLR+AMGKK K+ +DK K +
Sbjct: 957  KYDLDACEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQKDVLDKMKPK 1016

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            FI+ A++ G   +I   I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA 
Sbjct: 1017 FIAQAAEKGHQASILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAV 1076

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTA 850
            ++  M +++++  F ++ +Q  + ++ P VN   + F V    ++ + L+ IKGVG    
Sbjct: 1077 LSNNMSDIKQVAFFMEECKQMGVSVLGPDVNESDIKFSVNISGQVRFGLSGIKGVGDKAV 1136

Query: 851  RH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL-------- 901
               I+E +    + S+ DF  R +++ +N++  ES V++GA DCF Y R Q         
Sbjct: 1137 ESIIIERNESGLYKSVYDFAKRSNTRTVNKKAYESFVYSGAFDCFSYHRAQYFFVGINDK 1196

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-RFENEQRVLG 960
            +  ++ + K+A   + N  +   ++F                + E S + R + E+  +G
Sbjct: 1197 MNGIEKMIKFANDFQNNEASSQSSLFGAAAADMMISEPSLPVAPEWSLIDRLKYEKDAIG 1256

Query: 961  FYFSGHPLDVYK--------------PILRKMGIKGYEESV----ATIRGNNIRLAAMVV 1002
             + SGHPLD YK               ++ K+      E V     TI+   + +  +VV
Sbjct: 1257 IFLSGHPLDNYKLELKEFCQHKVKHLSLVNKIRTGDSNEEVLAEFETIKNRELVVGGLVV 1316

Query: 1003 SKQQKKTRKGSRIGWVTFSE 1022
               Q+ T+ G   G +TF +
Sbjct: 1317 LATQRITKTGKPFGIITFED 1336


>gi|324998887|ref|ZP_08119999.1| DNA polymerase III subunit alpha [Pseudonocardia sp. P1]
          Length = 1185

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 382/1076 (35%), Positives = 574/1076 (53%), Gaps = 73/1076 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ +S+L+GA  L+++  +   +   A+A+TD  N++ A EF +KA AAG++P
Sbjct: 8    SFVHLHTHTEFSMLDGAARLDDLFSEAVKNDMSAVAMTDHGNVYGAFEFWRKAKAAGVKP 67

Query: 70   IIGCQLDIDMQDN-------LKMTNQG---KTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  +            L  +N G   K P      + LL    EG   L  L S +
Sbjct: 68   IIGMEGYLAPGSRHERKRVALGGSNPGAADKNPDLMYTHMTLLAENTEGMHNLFRL-SSL 126

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
              L+      R+    L++ GT GLI  TG  SG + R    +  + A +    ++ +FG
Sbjct: 127  ASLEGYYYKPRMDRELLEQYGT-GLIGTTGCPSGEVARLLQQDDFEGACQAASDYRDIFG 185

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  +  L  H    ++  +  +  L    +LP +ATN+  +   +D +AH+VL+ V   
Sbjct: 186  KDNFFCELMDHGIEIEKRVQEDLFALKKRLDLPGLATNDLHYTYPDDTKAHEVLLCVQTG 245

Query: 238  TVVSQKDRPRV-TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRF 295
              ++  +R +    D YLK+ +EM  ++  + PEA +NT+ +A RC         + P+ 
Sbjct: 246  KTLADPNRFKFDAQDFYLKSATEMRELWDPIHPEACDNTLWVAERCDIDFTTGQDLQPKA 305

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
               E +     EE+ L  +   GL  R   G        + YR + ++E+ VI +M + G
Sbjct: 306  PVPEGE----TEESWLIKEVERGLHDRFPNGI------TEQYRTQANYEVGVIIKMGYPG 355

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+ AD I+ AK   I  GPGRGS AGS+ AY L ITD+DP+R  L+FERFLNPDR+SM
Sbjct: 356  YFLVTADLIRHAKSVGIRCGPGRGSAAGSLVAYVLGITDLDPIRHKLIFERFLNPDRVSM 415

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQVD 473
            PD D+DF + RR E+IRYV  KYG +R+AQIIT+ +++AKAA++D  R L  Q  YS  D
Sbjct: 416  PDIDMDFDERRRGEMIRYVTEKYGEDRIAQIITYSTIKAKAAIKDSARVLFGQPGYSVAD 475

Query: 474  RLCKLIPNDPA---HPVSLQAIADDS--RFREAR------LADPSVDRLLEISQKLEGLY 522
            R+ K +P  PA     + L  I D S  R+ EA        ADP V  +++ ++ LEGL 
Sbjct: 476  RISKAMP--PAVMGKDIPLSGIFDPSHKRYSEATEVRALYEADPQVKEIVDTARGLEGLK 533

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   PL  ++P+ R       +TQF+M   E  GL+K DFLGL+ LT+L
Sbjct: 534  RQWGVHAAGVIMSSTPLIDVIPIQRRESDGAVITQFDMGVCETIGLLKMDFLGLRNLTIL 593

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              +L+ +   G  +VDL  +  DD  TY LL+   TLG+FQL+   MR  L  M P   E
Sbjct: 594  DDALENITLNGKPEVDLDHVELDDGPTYELLSRGDTLGVFQLDGGPMRDLLRRMAPSEFE 653

Query: 642  DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQV 695
             I A+ +LYRPGP+       Y +RKNG+++I  IHP L +P+   L ET G+I+YQEQV
Sbjct: 654  HISAVGALYRPGPMGANAHNDYADRKNGRQEITPIHPELAEPLKDVLGETFGLIVYQEQV 713

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M IAQ+L+GYSL +AD+LRRAMGKK KE +DK+   F  G   NG S      ++++L  
Sbjct: 714  MSIAQVLAGYSLGQADLLRRAMGKKKKEILDKEYVGFAQGMKDNGYSADAVKTLWDILLP 773

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            F+DY FN++H+AAY V+SY TA++K +YP E++A  +T   D+ +K   +  + R+  + 
Sbjct: 774  FSDYAFNRAHSAAYGVVSYWTAYLKANYPAEYMAGVLTSVRDDKDKAAVYLAECRRMGVT 833

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDS 874
            ++PP VN    +F    N I + L  I+ VG      I+ A  +K  F    DF  +VD+
Sbjct: 834  VLPPDVNDSVRNFAPVGNDIRFGLGGIRNVGHNVVDAIVAARREKGNFVDFSDFLRKVDA 893

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT- 933
               N++V+ESL+ AGA D  G+SR  LL    +        +K  +    ++F    G+ 
Sbjct: 894  VVCNKKVVESLIKAGAFDSLGHSRKGLLLVHADAIDAVMSTKKAASLGQFDLFGSMDGSG 953

Query: 934  ----------FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                      F  K+  E++   +S  +   E+ +LG Y SGHPL   +  L        
Sbjct: 954  GDDGDELGGIFDVKVPEEEW---DSKHKLAVEREMLGLYVSGHPLQGLEQALAAKA---- 1006

Query: 984  EESVATI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + S+A I       G  + +  ++ +  ++  + G         + A   E  FFP
Sbjct: 1007 DTSIADIVEGSVAEGGQVTVGGILANVNRRVNKNGEPWASAQIEDLAGGIEVLFFP 1062


>gi|325845299|ref|ZP_08168602.1| DNA polymerase III subunit alpha [Turicibacter sp. HGF1]
 gi|325488660|gb|EGC91066.1| DNA polymerase III subunit alpha [Turicibacter sp. HGF1]
          Length = 1010

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 345/1022 (33%), Positives = 587/1022 (57%), Gaps = 72/1022 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQV S+YSLL  ++ +  ++D    +Q   +A+ +   + SA++F        ++P
Sbjct: 2    SFVHLQVRSAYSLLSSSIKIKELVDLALENQMSCLALVEEGTMHSAIKFYNACRRVNVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG  +++          QG +    +   V+L     GYQRL+++ S +    +G    
Sbjct: 62   LIGMSVNV----------QGDS---FIDEWVILARNQCGYQRLLKIASFI-AKQEGVVLY 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD---RLYVNL 186
               L ++Q+     L+++T G  G +         +  E+RLL + + +      LY+ L
Sbjct: 108  EQVLPFVQD-----LVVITSGEHGMLCSGI----EEYKEERLLQYYESYLKSIPHLYIGL 158

Query: 187  QR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             R   R Y+  +   ++  A     P+VA N+  +L +ED +   +L A+  +  V  ++
Sbjct: 159  MRVNQRTYELSK--HLISFASNVNRPIVALNDVRYLKKEDAKTLTLLQAIKQNQSV--EE 214

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             P V  + Y K+  +M  +F+D+P AL  T +IA  C   + +H  +LP++   E     
Sbjct: 215  LPLVDYERYFKSECQMKELFADVPNALMQTEQIANDCEVEIPLHQSLLPKYQTPEG---- 270

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               ++ L      GLE R         Y   +Y  RL +EL+VI +M FS YFLIV DF+
Sbjct: 271  VSSDSYLEALCFKGLEKR---------YGHLEYANRLKYELSVIHKMGFSDYFLIVWDFV 321

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++AK ++I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF  
Sbjct: 322  RYAKSHDIYVGPGRGSAAGSLVAYVLGITNVDPIKYELLFERFLNPERITMPDIDIDFQD 381

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDEVI+YVQNKYG   V QI TFG+ Q+++A RD+ R  Q+  + ++++   I +   
Sbjct: 382  NRRDEVIQYVQNKYGSHCVVQIATFGTFQSRSAWRDLARVHQVETTLINKVASFIYSGS- 440

Query: 485  HPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +L+ I + ++  R+     P ++ + + ++K+EGL RH S HAAG++I D  L+   
Sbjct: 441  ---TLKEIYEQTKGLRDFFSTYPKLEAIYKEAEKIEGLPRHTSIHAAGVIISDHDLTDYT 497

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
             +  +  + + V+Q+  + +E  GL+K DFLGLK L +LQ+    + +    + D++ IP
Sbjct: 498  AI-MEGPTGIYVSQYEAEDLEMIGLLKMDFLGLKNLNMLQQITTLIKSSVAPEFDINKIP 556

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +DD +TY +++   T G+FQLES GMRQ L  ++P+C+EDIIA  +L+RPGP++ I ++ 
Sbjct: 557  YDDLKTYEMISQGQTTGVFQLESEGMRQVLRAVRPNCLEDIIACNALFRPGPMEGIPLFA 616

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+ ++ I   HP +  +L +T G+I+YQEQ+MQIA ++SGYSL EADVLRRA+ KK K
Sbjct: 617  ARKHHEQPIEYYHPSLQYILSKTYGIIVYQEQIMQIANVVSGYSLGEADVLRRAVSKKKK 676

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E ++++++ F+  A + G  + IA  ++EL+ KFA+YGFN+SHA AY++I+YQ A++K H
Sbjct: 677  EILEREQKTFVEKAIERGYHQEIATQLYELILKFANYGFNRSHAVAYSMIAYQMAYLKRH 736

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP  F+  +++  + +     ++ ++A+Q +I ++PPS+N+  + +++ +  I +SL  I
Sbjct: 737  YPSYFMTVALSNVIGSESNTAQYVKEAKQLDILVLPPSINSSGLMYQIENENIRFSLLPI 796

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            K +G   AR I+       + S  DF SR  S  LN+R  E L+  GA+D FGY+R  L 
Sbjct: 797  KHIGMNLARQIVAERERGLYKSFYDFVSRTRS-FLNQRAYEGLIDVGAMDEFGYNRTTLH 855

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLG 960
             +L  I  ++++               + G F    +I + K ++ +S+ + + E+ +LG
Sbjct: 856  HNLTAILDFSKY---------------DGGLFETDFEIMMMKETL-SSAEKMKREKELLG 899

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY + HP+ + +   ++ G   +   +  +  + I     V   ++ + +KG  + ++  
Sbjct: 900  FYLNSHPIHLMRDQAKEKGWY-FPSDLIHLNVSTITCVGFVEKFREIRDKKGKLMAFMDI 958

Query: 1021 SE 1022
            S+
Sbjct: 959  SD 960


>gi|315655526|ref|ZP_07908425.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii
            ATCC 51333]
 gi|315490181|gb|EFU79807.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii
            ATCC 51333]
          Length = 1225

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 376/1066 (35%), Positives = 578/1066 (54%), Gaps = 83/1066 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VH+ YS+L+GA  +  ++ K   +QQ A+AITD   LF A EF Q+   AGI
Sbjct: 3    SSEFVHLHVHTDYSILDGAAKIKRLVAKAVENQQKAVAITDHGYLFGAFEFYQECRNAGI 62

Query: 68   QPIIGCQLDID-----------MQDNLKMTNQGK--TPFPTVPSIVLLVSTAEGYQRLIE 114
            +PIIG +  +                L+    G   +       + LL  T EG   L  
Sbjct: 63   KPIIGLEAYVTPGTSRFDTTRVQWGTLEQQKAGDDVSARGAYTHMTLLSYTTEGMHNLFR 122

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S   L  Q  +  R     L+    EGLI   G  SG +         Q A +     
Sbjct: 123  LGSYASLDGQMGKWPRADRELLERY-HEGLIGTAGCPSGEVQTRLRLGQYQEAVRAAGEL 181

Query: 175  KKLFG-DRLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            + +FG D  YV L  H     +R R+  +++LA     P++ATN+S ++ +ED E  D +
Sbjct: 182  QDIFGKDYFYVELMDHGLSIENRVRKD-LLRLAREINAPVIATNDSHYVYKEDREIQDAM 240

Query: 232  MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCS--FILQVH 288
            + +     +S  DR R    D+YL+   EM  +F+++PEAL+NT+ IA +C+  F     
Sbjct: 241  LCINSGDRLSNPDRFRFDGTDYYLRPSEEMHELFAEIPEALDNTLLIAEQCNVEFPDVKE 300

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +P F     +D    E +    +   GL+ R   G       +++ R+R D+E+ +I
Sbjct: 301  GTFMPVFPVPAGED----EVSWFIKEVERGLQYRFPNGI------SEEVRKRADYEVEII 350

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F  YFLIV+D+IQWAK N I VGPGRGSGAGS+ AYA+ ITD+DP++  LLFERFL
Sbjct: 351  VQMGFPSYFLIVSDYIQWAKDNGIRVGPGRGSGAGSMVAYAMRITDLDPIKHGLLFERFL 410

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DF   RR +VI YV  KYG ++V+Q++T+G++++K AL+D  R     
Sbjct: 411  NPERVSMPDIDVDFDDRRRQDVIDYVTRKYGKDKVSQVVTYGTIKSKQALKDAARISGAD 470

Query: 469  YSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
            +S+ ++L K +P              +P HP   +A      FR+    DP   ++ +++
Sbjct: 471  FSKGEKLTKAMPPAVMGKDIPLSGMYNPQHPRYKEA----EEFRKVVAEDPFNRQIFDLA 526

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
              +EG+ R    HA  +++    L+ ++PM +  +    +TQF+    E  GL+K DFLG
Sbjct: 527  AGVEGMVRQWGVHACAVIMSRETLTDVIPMMKRPQDGAMITQFDYPTCEHLGLLKMDFLG 586

Query: 576  LKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            LK LT++  +LD +   G    DL  +  DD  TY LL+T  TLG+FQL+  GMR  L+ 
Sbjct: 587  LKNLTIISDALDNIKINGKTPPDLERLDVDDKATYELLSTGETLGVFQLDGGGMRTLLKQ 646

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIH-----PLIDPMLKETQG 687
            ++P   +DI ALV+LYRPGP+  ++   Y  RKNG +KI  IH     PL D +L  T G
Sbjct: 647  LRPTEFDDISALVALYRPGPMGANSHTNYAFRKNGLQKIEPIHRELEEPLKD-ILGYTYG 705

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +IIYQEQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G  ++G S+    
Sbjct: 706  LIIYQEQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMIEHGYSEECCE 765

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++ +L  FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + D  +K+  +  
Sbjct: 766  TLWGILVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQTDK-DKLGMYLN 824

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLE 866
            + R+  I+++PP VN     F    N I + LA+I+ VG      I++A  +K  + S  
Sbjct: 825  EVRRMGIKVLPPDVNQSYGVFAPDGNDIRFGLASIRNVGENVVAEIIKARQEKGAYTSFS 884

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF  +V ++  N+R + SL+ AGA D FG  R  L    +   +     ++  +N   ++
Sbjct: 885  DFLKKVPAEVCNKRTIGSLIKAGAFDAFGAPRSALTAIHEQAVEAVVSTKRQESNGQFDL 944

Query: 927  FA--HEKGTFSDKITLEKFSVE---------NSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            FA    +GT S    L   S++         N  + FE E  +LG Y S HPL     +L
Sbjct: 945  FAALEMEGTESPDNLLGSPSIDIPDISEWPKNELLAFERE--MLGMYVSDHPLSGMNRVL 1002

Query: 976  RKMGIKGYEESVATI-----RGNN--IRLAAMVVSKQQKKTRKGSR 1014
              +     E+ +  +     +GN+  +++A +V +   K +++  +
Sbjct: 1003 EGLA----EDRIVDLTSDEGKGNDSPVKIAGLVTAVNVKISKRSGQ 1044


>gi|332044617|gb|EGI80811.1| DNA polymerase III, alpha subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 1453

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 369/1067 (34%), Positives = 564/1067 (52%), Gaps = 74/1067 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------------ 58
            FVHL  HS +S+L+  +S+ +I+   A    PA+A+TD  N+  A  F            
Sbjct: 261  FVHLHNHSQFSVLQSTMSVADIVAVAAEHNMPAVALTDHANMMGAFHFVNAVNKHNKAVE 320

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
             +   A  I+PI+GC+  +  +++L  + +          IVL+     GY  L +L S 
Sbjct: 321  GKTTDAKKIKPIVGCEFFV-CENHLDKSRKDNGY-----QIVLIAKNKNGYHNLAKLSSH 374

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             +    G   V      L E   E LI LTG   G +           AE+ L+ +K+ F
Sbjct: 375  AFT--DGFYYVPRIDKKLIEQYKEDLICLTGNLYGEVPSKVLNVGENQAEEALIWWKETF 432

Query: 179  GDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-- 235
             D LYV L RH   D  R    ++ LA  H++ LVATNN+ +  +ED  AHD+L+ V   
Sbjct: 433  QDDLYVELMRHNQEDENRVNPTLISLAKKHDVKLVATNNTYYAKQEDANAHDILLCVKDG 492

Query: 236  --HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
               +T + +    R      ++Y K+   M +IF D+P+A+ N  E+  +          
Sbjct: 493  EKQATPIGRGRGYRYGLPNQEYYFKSAEAMKNIFKDVPDAIINIQEVVDKIEGFQLARDV 552

Query: 291  ILPRF-------IEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
            +LP F        +++ +D  K  EN  LR+    G + R  +        +++  +RLD
Sbjct: 553  LLPAFDIPEEFQHKEDLEDGGKRGENAFLRHLTYEGAKKRYGEEL------SEEVVERLD 606

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            FEL+VI +  + GYFLIV DFI+ A+  ++ VGPGRGS AGSV AY L IT+IDP++++L
Sbjct: 607  FELSVIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVVAYCLWITNIDPMKYNL 666

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNPDR+SMPD DIDF  + R  V+ YV  KYG  +VAQIIT+G++ AK+++RD  
Sbjct: 667  LFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIEKYGSNQVAQIITYGTMAAKSSIRDTA 726

Query: 463  RALQMPYSQVDRLCKLIP--NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ---- 516
            R L +P    DR+ KLIP  +       L      S+FR   L    ++ LL IS+    
Sbjct: 727  RVLDLPLFDADRIAKLIPTMSKLGKIFGLSEKELGSKFRAEDLE--KINELLNISEGEDL 784

Query: 517  ---------KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
                      LEG  R+   HA G++I    +++ VP+     SDL VTQF+   +E AG
Sbjct: 785  QAETVNIARSLEGSVRNTGIHACGVIITPDDITKFVPVSVAKDSDLYVTQFDNSVVEDAG 844

Query: 568  LIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGLKTLTL++ ++  + A+ G+ +D    P DD ETY L     T+G+FQ ES 
Sbjct: 845  LLKMDFLGLKTLTLIKDTVKIVKAKHGITLDPENFPLDDEETYALFQRGETVGVFQYESP 904

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            GM++ L+ ++P   +D+IA+ +LYRPGP++ I  +  RK+G E I    P ++  LKET 
Sbjct: 905  GMQKHLKDLKPTVFDDLIAMNALYRPGPMEYIPSFVRRKHGDEDIEYDLPAMEEYLKETY 964

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK    +DK K +FI  AS  G      
Sbjct: 965  GITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQASAKGHDAKKL 1024

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA ++  M++++++  F 
Sbjct: 1025 EKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMNDIKQVTFFM 1084

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDS 864
            ++ ++  + ++ P VN     F V  DN + + + AIKGVG      I++    D P+ S
Sbjct: 1085 EECKRMKLPVLGPDVNESYYKFSVNKDNAVRFGMGAIKGVGHGAVMTIVDNRKKDGPYKS 1144

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS-RMQLLQS-------LDNIQKYAQWVE 916
            + D   R+D +  N++  E+L  AG  DCF  + R Q           L+   KY    +
Sbjct: 1145 IFDIAKRIDLRAANKKAFENLALAGGFDCFTDTHRAQYFHKEGSDLTFLEKAIKYGAKHQ 1204

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            +N  +   ++F         +  +       +  +   E+ V+G Y SGHPLD ++  ++
Sbjct: 1205 ENENSAQVSLFGGGSDVQIAEPEVPPCETWGTMEKLAQEREVVGVYISGHPLDDFRTEMK 1264

Query: 977  KM--GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
                G   Y   +      +I    +V   Q + +++G   GW  F+
Sbjct: 1265 NFCTGTIAYFNDLHEHVNKDITFGGVVTDVQHRVSKQGK--GWALFT 1309


>gi|23099632|ref|NP_693098.1| DNA polymerase III alpha subunit [Oceanobacillus iheyensis HTE831]
 gi|22777862|dbj|BAC14133.1| DNA polymerase III (alpha subunit) [Oceanobacillus iheyensis HTE831]
          Length = 1106

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 369/1036 (35%), Positives = 561/1036 (54%), Gaps = 66/1036 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL + S YSL+E  +++  ++DK   ++Q A+A+TD   L+ A+ F +     GI+P
Sbjct: 2    SFTHLYIKSGYSLMESTITIPKLIDKAKQERQEALALTDIGVLYGAISFYKACIDNGIKP 61

Query: 70   IIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG  + + D Q N            TVP  VLL     GYQ LI L + + +   G + 
Sbjct: 62   IIGLTVMVKDEQLN-----------ETVPC-VLLAKNNNGYQNLISLSTNINI--NGNEE 107

Query: 129  VRICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVN 185
            V   L  ++  +I   G++ +T G    +++ F    ++       ++  LF D   Y+ 
Sbjct: 108  VEKSLLDNYTDDIV--GILPVTTG----MEKVF----TEELGTYFSSWSNLFSDDDFYIG 157

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            + RH         +V+Q   +  +PL +     +L E D+ A+D L A+ +       + 
Sbjct: 158  VDRH-------SLEVIQSLQSLSIPLTSIQEVRYLHENDHIAYDCLQAIRYGEKWDGTEI 210

Query: 246  PRVTPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                   +     EM  +F  + PEAL NT  I  +C+  + ++   +P F         
Sbjct: 211  NSKNKQLHFTTEKEMEDLFQYIAPEALANTERIKDKCNLEINMNERYIPSFPVPNS---- 266

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               ++ L+   ++ +E R  +              RL++EL VI  M +S YFLIVADFI
Sbjct: 267  LTADSYLQQLCISKIEERYKE-------RNDQIMNRLNYELEVIQSMNYSDYFLIVADFI 319

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            Q+AK N I VGPGRGS AGS+ AY L IT++DPL ++LLFERFLNP+R+SMPD D+DF  
Sbjct: 320  QYAKDNQIAVGPGRGSSAGSIVAYLLGITEVDPLEYNLLFERFLNPERLSMPDIDVDFSD 379

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RRDEVI YV+ KYG + VAQIITFG+  A++ LR++ + L +    ++ + K IP    
Sbjct: 380  VRRDEVIDYVREKYGQDHVAQIITFGTFAARSVLRELMKTLDVHEMDMNYVMKEIPTQSN 439

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               SL  I  +    +A +   S  +LL  I+ KLEG+ R+ STHAAG+VI ++ L+  V
Sbjct: 440  R--SLTDILKEKEELKAYVKQSSRLKLLFSIAVKLEGIPRNVSTHAAGVVISEKKLTNHV 497

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK-SLDFLAQRGVKVDLSLIP 602
            P+         +TQ+ M  +E  GL+K DFLGL+ L+L++K +      R   + L+ IP
Sbjct: 498  PLTIGTNQTY-LTQYAMGELETIGLLKMDFLGLRNLSLIEKVNTAITNSRHRSLQLAEIP 556

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
              D  T+ LL    T G+FQLES GM++ L+ + P   EDI+A+ +LYRPGP+D I  Y 
Sbjct: 557  EQDEATFQLLRKGHTNGVFQLESDGMKKVLQELMPSTFEDIVAVNALYRPGPMDFIPTYI 616

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK   E +   HP + P+L +T GV+IYQEQ+MQIA +++G++L EAD+LRRA+ KK +
Sbjct: 617  RRKKNVEPVSYPHPDLKPILSKTYGVLIYQEQIMQIANVIAGFTLGEADILRRAVSKKKE 676

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             +M KQK+ FI G    G  K +A  IF  + +FA+YGF +SHA AY+ ISYQ A+MK H
Sbjct: 677  SDMYKQKQAFIDGCINRGYKKEVADEIFSWIVRFANYGFPRSHAVAYSKISYQLAYMKAH 736

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP  F A  ++   +  EKI  + Q+ ++ N  I+PP +N     + V    I   L+AI
Sbjct: 737  YPNAFYAELISGVRNQQEKINTYIQEFKKLNGNILPPDINKSYGKYAVERKDIRMGLSAI 796

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KG+G    + I++A  D  F +  DFC RV+ K ++R ++E+LV  G  D    +R  LL
Sbjct: 797  KGIGIQPIQEILQARKDGTFKNFFDFCMRVNLKIVSRTIIENLVLVGVFDSIYRNRASLL 856

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV----RFENEQRV 958
             S+D      Q +E+    K    F  +   F D+I + +   E        +  +E+ +
Sbjct: 857  ASID------QAIEQKELFKE---FLDQPSLFQDQIEMVESYTEIEDFTKIKKLSDEKEL 907

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK-KTRKGSRIGW 1017
            LGFY S HPL  Y+  LR  G      +   +    +  A ++V   +  +T++G R+ +
Sbjct: 908  LGFYVSSHPLKEYRKKLRSAGNITLSHAKKLVNTRKVIHAVVIVDAMKVIRTKRGDRMAF 967

Query: 1018 VTFSEPAKEYEANFFP 1033
            +T S+   E +A  FP
Sbjct: 968  LTISDEELEIDAVLFP 983


>gi|311063925|ref|YP_003970650.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum PRL2010]
 gi|310866244|gb|ADP35613.1| DnaE DNA polymerase III alpha subunit [Bifidobacterium bifidum
            PRL2010]
          Length = 1192

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 369/1077 (34%), Positives = 580/1077 (53%), Gaps = 69/1077 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  H+ YSLL+GA  + +++ ++     PA+ ITD  N+  A E  + A  +G++P
Sbjct: 7    NFVQLHNHTHYSLLDGASKVPDLVKRVKELGMPAVGITDHGNMHGAYELWRAAVDSGVKP 66

Query: 70   IIGCQL----DIDMQDNLKMT-NQGKTPFPT-------------VPSIVLLVSTAEGYQR 111
            IIG +     +   QD  +++ +   TP P              +  + +     EG   
Sbjct: 67   IIGIEAYVTPETARQDKTRVSWDTNWTPVPGHARNPDDVSGGGLITHLTMWAENDEGLVN 126

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            LI+  S   L  +  +  R+    L    ++G+I  +G  SG I           A +  
Sbjct: 127  LIKASSVANLEGRVMRYPRMDKEVLSTY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAA 185

Query: 172  LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              F+ +FG D  Y+ L  H    +      ++ +A     PL+ATN+S ++ E D +A D
Sbjct: 186  GEFQDIFGKDNFYIELMDHGLSIESKVTGDLLTIAKKLGAPLLATNDSHYVMEADKDAQD 245

Query: 230  VLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             ++ +     +   +R +     +Y+K+  EM  +F D P+A +NT+EIA RC+ I   H
Sbjct: 246  AMLCINSGATLDDPNRFKFEGSGYYIKSAEEMRELFKDHPDACDNTLEIAERCNVIFDDH 305

Query: 289  --APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                 +P+F   +C +   E    L+ K   GLE R        G    +  ++ D+E  
Sbjct: 306  EDGAFMPQF---DCPEGWDETSLFLK-KVEEGLEKRY------DGNPPMEVLKQADYECG 355

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI +M+F GYFL+VAD+I WAK++ + VGPGRGS AG++ AYA+ IT++DPL+  L+FER
Sbjct: 356  VICQMQFCGYFLVVADYINWAKEHGVMVGPGRGSAAGAMVAYAMGITELDPLKHGLIFER 415

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+S+PD D+DF  + R  V+ YV +KYGH++VAQ + +G+++ K AL+D  R + 
Sbjct: 416  FLNPERVSLPDIDVDFDPEGRMRVLGYVADKYGHDKVAQCVIYGTIKTKQALKDSARIMG 475

Query: 467  MPYSQVDRLCKLIPNDPA----HPVSLQAIADDS--RFREARL------ADPSVDRLLEI 514
             P+    R+ + +P  PA      +S+  I D S  R+ EAR       +DP V R+ E 
Sbjct: 476  FPFEMGTRITEALP--PAATGGKDISVHDIFDPSAKRYAEAREYRELYDSDPEVKRITEE 533

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDF 573
            ++ +EGL R    HA   ++G  P++   P+    R+D  V T F     E  GL+K DF
Sbjct: 534  AKGIEGLIRQTGVHACATIMGSAPITDTSPLLE--RTDGTVTTTFEYHTCETLGLVKMDF 591

Query: 574  LGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL  LT+++ +L  +   G  V D + IP DD ETY LL+   TLG+FQL+S GMR  L
Sbjct: 592  LGLSNLTVIRDTLTNIEHNGKGVIDYTKIPLDDRETYQLLSRGDTLGVFQLDSDGMRSLL 651

Query: 633  EGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQ 686
            + ++PD   DI AL++LYRPGP  +D+   Y  RKNG +KI  IHP +D  LK    ET 
Sbjct: 652  KTLKPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELDEPLKQVLDETY 711

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+IIYQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  A
Sbjct: 712  GLIIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEAA 771

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              I+E+L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N  K   + 
Sbjct: 772  EAIWEILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKNKTALYL 831

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM--EASADKPFDS 864
             +AR+  IQ++ P VN    ++    + + + L AI+ VG    + I+    +    + +
Sbjct: 832  GEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGENAVKDIIAERETGRGKYVN 891

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              DF  RV    LNRR++ESL+ AGA D    +R  L    ++       +++ +     
Sbjct: 892  FMDFIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHESAIDSVVGLKRKQAEGQF 951

Query: 925  NIFAHEKGTFSDKITLEKFSVE-----NSSVRFENEQRVLGFYFSGHPLDVYKPIL---R 976
            ++F+  + + +D +     +V      +   + + E+ +LG Y S HPL   + +L   R
Sbjct: 952  DLFSDTEDSSADAMGDATVAVPDIEEWDKKDKLKFERDMLGLYVSDHPLSGMQAVLAGMR 1011

Query: 977  KMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +M I    +   T+  G  + LA ++ +  ++ ++KG+    VT  +     +  FF
Sbjct: 1012 EMSIAHLIDRAPTMPSGQQVTLAGLITNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1068


>gi|160947425|ref|ZP_02094592.1| hypothetical protein PEPMIC_01359 [Parvimonas micra ATCC 33270]
 gi|158446559|gb|EDP23554.1| hypothetical protein PEPMIC_01359 [Parvimonas micra ATCC 33270]
          Length = 1122

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 342/987 (34%), Positives = 556/987 (56%), Gaps = 56/987 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL VH+ YSLL     +  +++K       A+AITD NN++  ++F ++     I+PI
Sbjct: 5   FVHLNVHTEYSLLNNYNPIEKLIEKAKELNFKAMAITDYNNMYGVIDFYKRCKKNSIKPI 64

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IGC+L +   +N               +I+LL     GY+ L +LVS +Y+++   +   
Sbjct: 65  IGCELTLSYSNN------------EFYNIILLAKNNLGYKNLCKLVSNLYVVENRNREF- 111

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
           I    L++  ++ LI++ G     I +  +      A+  +L FK LF  + L++ L  H
Sbjct: 112 ITFDELEKY-SKNLILIVGSKRSFIRKCLYSEDILSAKNEILNFKSLFNREDLFLELNFH 170

Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D    ++ ++ A    +  V TN+  +L   D+    +   ++   ++S+      
Sbjct: 171 FEENDELMMNRYLEFANEVNIETVVTNDVHYLENTDFNLFKIARCISKGVLLSELKEDNF 230

Query: 249 T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           T  +++LK+  EM+ IFS L +++ NT  IA+RC+         LP +   +  D    +
Sbjct: 231 TQAEYFLKSEEEMLKIFSTLEDSMYNTKMIAQRCNVEFDFSTYHLPEY---KVPDGVSTK 287

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
           E+ L +  + G++ R             + ++R+++E +VI +M F+ YFLIV DF+ +A
Sbjct: 288 EDYLHSLIIEGMKKRYEN-------LTDEIKKRVNYEFSVINKMGFTDYFLIVWDFVNFA 340

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           KKN IPVGPGRGSGA S+ AY L ITDIDP+ + L+FERFLNP+R+SMPDFDIDFC +RR
Sbjct: 341 KKNKIPVGPGRGSGANSIVAYCLEITDIDPIEYDLIFERFLNPERVSMPDFDIDFCNERR 400

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           +EVI YV  KYG   V+QIITFG+++ +AA+RD+GR L    S VD++ KLIPN+     
Sbjct: 401 EEVIDYVIKKYGKNHVSQIITFGTMKPRAAVRDIGRVLGYKLSTVDKVAKLIPNNLDVTF 460

Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              A+ D    ++    D ++ +L+ IS+K E  +RH S HAAGIVI    L++ +P+ +
Sbjct: 461 K-NALRDSLELKKLYDEDINIKKLINISEKFEKFHRHISIHAAGIVITKEELTEYIPLAK 519

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDH 606
              +   VTQFNM  +E+ GL+K DFLGL+TLT++  ++  + +   + +D+  I  +D 
Sbjct: 520 SGEN--IVTQFNMVELEELGLLKMDFLGLRTLTVIDDTIKLVKKNYNRDIDIEKISLNDK 577

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              +L  T  T+GIFQ ES+GMR  L+ ++ D  ++++A  SL+RPGP++ I  Y   K 
Sbjct: 578 NVLNLFKTADTIGIFQFESTGMRLFLKDLKADNFDELVAANSLFRPGPMNQIPNYIKNKR 637

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
               I  +   ++  LK T G+I+YQEQVMQIA+ L+GY+  +AD LR+A+GKK  + M+
Sbjct: 638 NPSGIRYLDKRLEKYLKSTYGIIVYQEQVMQIARELAGYTWGQADNLRKAIGKKHMDIME 697

Query: 727 KQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
             ++ F            I G  +NG+ + +A NIF+L+ +F +Y FNKSH+A Y++ +Y
Sbjct: 698 YNRKIFIYGLDNLDGSIKIKGCIRNGVDEKLAQNIFDLIVEFGNYAFNKSHSACYSLNAY 757

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
           +TA++K +YP+E++   +   ++   +   + Q+ ++  I+I+ PSVN         +  
Sbjct: 758 RTAYLKYYYPLEYMVCLLNSVINYERQFFLYFQEIKRMGIKILLPSVNFSFYKISTENKC 817

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-DSKKLNRRVLESLVFAGALDC 893
           +    + IKG     A+ I+EA     F + ++F  R+ DSK +N   +E+L+ +GA D 
Sbjct: 818 MRVGFSQIKGFNRLLAKDIIEARKAGKFKNFKEFLERLKDSKNMNLISIENLIKSGAFDE 877

Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR-- 951
              +R+++L S + +  + Q V K++     N  + +    S     EKF VE  +    
Sbjct: 878 IEKNRIEILNSCETL--FTQIVSKSK-----NELSGQLSLISSDFMQEKF-VEYKNFSKD 929

Query: 952 --FENEQRVLGFYFSGHPLDVYKPILR 976
              E E+ VLGFY S HPLD YK  ++
Sbjct: 930 DTLEFEKDVLGFYISAHPLDSYKEYIK 956


>gi|319935864|ref|ZP_08010290.1| hypothetical protein HMPREF9488_01121 [Coprobacillus sp. 29_1]
 gi|319809131|gb|EFW05612.1| hypothetical protein HMPREF9488_01121 [Coprobacillus sp. 29_1]
          Length = 1018

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 343/972 (35%), Positives = 548/972 (56%), Gaps = 63/972 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HLQV S+YS     + + +++    A    A+A+TD NN+F ALEFSQ+    GI+PI
Sbjct: 2   FGHLQVLSAYSFQNSTILIKDLIQDANAKHIEALALTDKNNMFGALEFSQECLKYGIKPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +  + ++  +        PF      +LL     GY  L+++   + L +       
Sbjct: 62  FGMEASVMIEGEI-------YPF------ILLAKDDIGYFDLVKVCCDINLHEDK----- 103

Query: 131 ICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            C+        +G + +++G + G ++R       + A K L +FK +F D  YV +Q H
Sbjct: 104 -CIDLKSLALYKGHMYIISGSAQGIVERLVAKEMEEEAVKYLKSFKDIFQDNYYVMIQNH 162

Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +    +++ LA    + ++ +N  ++L + D  A D++ A      +  K  P +
Sbjct: 163 HIKLQQALNERIISLAKYCRVKILCSNEVIYLKKADALAVDLMQAANQGLTLESKYVP-I 221

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
           T + YLK   EM  +F    E L  T E+ + C   + +    LP F          E  
Sbjct: 222 TEEKYLKTEDEMKMLFD--AEILAETREVVQNCKATIPLQDKHLPSFPVPH----HGEAS 275

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             L+     GL+ R     I        Y +RL +EL +I +M F  YFLIV D++++AK
Sbjct: 276 EYLKGLCQMGLKKRFQNQKIP-----SQYVKRLQYELKIIHQMGFDDYFLIVWDYVRFAK 330

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            N I VG GRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDF  DRRD
Sbjct: 331 VNKIQVGAGRGSAAGSLVAYVLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFQDDRRD 390

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
           EV+ YV  KYG + VAQI+TF +   + A++D+G+ + +P ++++ + K+IP  P +  +
Sbjct: 391 EVVHYVVEKYGQDHVAQIVTFNTYGPRVAIKDMGKVMGIPLARLEIIAKMIPTGPKNKKT 450

Query: 489 LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
           +  +   S +F+     DP + +++  +  +E L R+ STHAAG+++  +PL +++P+  
Sbjct: 451 ITTMYKTSAQFQSMINQDPLLKKIIGATSVIEHLPRNISTHAAGVILSKQPLREVIPLVL 510

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------LSLI 601
              + L ++Q++  +IE+ GL+K DFLGLK LT++    D++  + +K D      L+ +
Sbjct: 511 GPTATL-MSQYSKDYIEEVGLLKMDFLGLKNLTMI----DYIC-KDIKRDINETVFLNQL 564

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
           P +D +TY L+    T G+FQLES GMR  L  M+P C +DI+A ++L+RPGP++NI +Y
Sbjct: 565 PLNDQKTYELIARADTFGVFQLESQGMRNLLRKMKPYCFDDIVAAIALFRPGPMENIPLY 624

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             R+  +EK+V   P ++P+LK T GV+IYQEQ+MQ+AQ ++G+SL +AD+LR+A+ KK 
Sbjct: 625 LKRRGLQEKVVYPLPELEPILKSTYGVMIYQEQIMQVAQKMAGFSLGKADILRKAVSKKE 684

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              M   KE FI+G    G  +  A+ IFEL+ KFA+YGF K+H+ AY  ++YQ A++K 
Sbjct: 685 TGLMQSMKEEFIAGCIDKGYREEKAIEIFELIEKFANYGFGKAHSVAYGYVAYQLAYLKA 744

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFC-QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
           +YP+ F A+ ++ E+ + E  K  C Q+ + +++ I+PPSVN     F V +  I YSL 
Sbjct: 745 NYPLYFFASILSNELSS-ETTKLHCIQECKTYHVDILPPSVNYSHARFMVENGHIRYSLL 803

Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
           AIK VG    + I+E   +  F+ + DF  R+D  KL+++++ESL+ AGALD F  SR  
Sbjct: 804 AIKNVGYAGYKAIVEERKNGLFEDVYDFMMRMDESKLSKKMIESLIDAGALDEFQLSRNT 863

Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
           + ++LD I+ Y     KN     E         F D+             +   E+ VLG
Sbjct: 864 MKKNLDTIRDYGNL--KNMLGIDEKPVLTIYKDFQDE-------------KLRKEKEVLG 908

Query: 961 FYFSGHPLDVYK 972
            Y + HP+++ K
Sbjct: 909 IYLTMHPIELMK 920


>gi|260890684|ref|ZP_05901947.1| DNA polymerase III alpha subunit [Leptotrichia hofstadii F0254]
 gi|260859562|gb|EEX74062.1| DNA polymerase III alpha subunit [Leptotrichia hofstadii F0254]
          Length = 1185

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 362/1022 (35%), Positives = 578/1022 (56%), Gaps = 77/1022 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ YSLLEG   ++  ++K       A+AITDT+ +F A+EF +K   AGI+PI
Sbjct: 5    FVHLKLHTEYSLLEGVGKIDEYVEKAKKIGVKALAITDTS-MFGAIEFFKKCKNAGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ +D  + +         F    S+ LL     GY+ L +L S  Y      ++ +
Sbjct: 64   IGLEVFLDGLEKV-------GEF----SLTLLAKNQNGYKNLSKLSSISYSRFTRNRN-K 111

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L++  ++ L +L+GG +  + +      +    + +    K FGD  ++ +    
Sbjct: 112  IKYDELKKY-SDDLYILSGGINSEVVKGILDLENTQVRRVIEKLGKDFGDNFFIEVPAVE 170

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR--- 247
              ++ R+     +        V TN+  + + +D     ++ ++   + +  +       
Sbjct: 171  RLEKARKMLFDIVRKNKFDNFVITNDVYYPNRKDAVLQKIVESIKEGSKIDTEKSENSEI 230

Query: 248  VTPDHYLKNRSEMVSIF-----SDLPEALENTVE-IARRCSFILQVHAPILPRF------ 295
            +  D YLK+ +E+   F     S+  E   N VE I   C+   + H    P++      
Sbjct: 231  LYDDLYLKSENEIEKSFENKEYSEFYETGINNVEKIVENCNVDFEFHHFKFPKYSLPQNV 290

Query: 296  ------------------IEKECDDIQKEE--------ENELRNKAVAGL---EVRLAQG 326
                              ++K   D +K +        E E+    +AG    EV++ + 
Sbjct: 291  SEKEFLRNLVFEGLFHKYLKKSVSDSEKLQLDKNFEIIEKEIAKDEIAGQKLKEVKIREE 350

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
             +   ++ ++  +R ++EL +I +M ++GYF+IV DFI+++++N + VGPGRGS AGS+ 
Sbjct: 351  LLK--HNLENVLERAEYELEIIDKMGYNGYFIIVWDFIKFSRENGVYVGPGRGSAAGSIV 408

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            +YAL IT+IDPL ++L+FERFLNP+R+SMPD DIDF Q++R+ VI YV NKYG E VA I
Sbjct: 409  SYALNITEIDPLEYNLIFERFLNPERISMPDIDIDFDQEQREIVINYVVNKYGAEYVAHI 468

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
            ITFG+L+A+ A+RDVGR L +   +VD++ K+IP +     +L  I +  +  E    D 
Sbjct: 469  ITFGTLKARLAIRDVGRVLNVSLVKVDKIAKMIPFNTELKDALNNIPEIRKMYE---TDR 525

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
             + R+++ S KLEG  RHAS HAAG+VI    LS  +P Y D ++ +  TQ+ MK +E+ 
Sbjct: 526  EIRRVIDYSLKLEGKVRHASVHAAGVVISKDVLSDEIPTYSDGKTKIVSTQYQMKELEEL 585

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            G++K DFLGLK LT+L+K+++ + + R +K+DL+ I  +D +TY LLT   T+G+FQ ES
Sbjct: 586  GILKMDFLGLKNLTILRKTVENIEKRRKIKIDLNDISLNDEKTYELLTKADTMGVFQCES 645

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK 683
            +G+R  ++ M+ +  EDIIAL++LYRPGP+ + +V  + N KN K +I  I   +  +L+
Sbjct: 646  AGIRSLMKKMKIEKFEDIIALLALYRPGPLRSGMVDDFINVKNNKTEIKYIDNSLKYILE 705

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+I+YQEQVM+I   ++ YSL EAD LRRA+GKK  E M K +E+F++ A KNG+  
Sbjct: 706  ETYGIILYQEQVMKIVSEMANYSLGEADELRRAIGKKNPELMKKNREKFVTNAEKNGVLS 765

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
              A  I++L+ KF  YGFNKSH+AAYA+I Y TA+ K +YP+EF AA MT E+ N+++  
Sbjct: 766  KKANEIYDLVEKFGGYGFNKSHSAAYALIVYWTAYFKVNYPLEFFAAIMTTEVHNLDRFV 825

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----------IYYSLAAIKGVGTTTARHI 853
             F  +AR+  I I  P VN    DF++ +N+          I + L AIKGVG      I
Sbjct: 826  VFVNEAREKGINIFLPDVNLSDYDFEIEENQADNENFGKVGIRFGLFAIKGVGAALINEI 885

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
             +   +  F S +DF  R+    + ++ LESL+ +GALD    +R +  +S+D + +Y+Q
Sbjct: 886  KKERKNGKFVSYKDFGYRMKQNGITKKQLESLILSGALDGLDGNRFEKYKSIDKVLEYSQ 945

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
               ++  +    +F  +K    D   +EK       V  +NE+  LG Y S HPL+  K 
Sbjct: 946  KKYESEEDFQLILFGGKKEISVD-FQMEKSEEFPQKVLLQNEKEYLGIYVSSHPLNEKKN 1004

Query: 974  IL 975
            ++
Sbjct: 1005 LI 1006


>gi|224282597|ref|ZP_03645919.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum NCIMB
            41171]
 gi|310287058|ref|YP_003938316.1| DNA polymerase III, alpha subunit [Bifidobacterium bifidum S17]
 gi|313139756|ref|ZP_07801949.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum NCIMB
            41171]
 gi|309250994|gb|ADO52742.1| DNA polymerase III, alpha subunit [Bifidobacterium bifidum S17]
 gi|313132266|gb|EFR49883.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum NCIMB
            41171]
          Length = 1189

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 369/1077 (34%), Positives = 580/1077 (53%), Gaps = 69/1077 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  H+ YSLL+GA  + +++ ++     PA+ ITD  N+  A E  + A  +G++P
Sbjct: 4    NFVQLHNHTHYSLLDGASKVPDLVKRVKELGMPAVGITDHGNMHGAYELWRAAVDSGVKP 63

Query: 70   IIGCQL----DIDMQDNLKMT-NQGKTPFPT-------------VPSIVLLVSTAEGYQR 111
            IIG +     +   QD  +++ +   TP P              +  + +     EG   
Sbjct: 64   IIGIEAYVTPETARQDKTRVSWDTNWTPVPGHARNPDDVSGGGLITHLTMWAENDEGLVN 123

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            LI+  S   L  +  +  R+    L    ++G+I  +G  SG I           A +  
Sbjct: 124  LIKASSVANLEGRVMRYPRMDKEVLSTY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAA 182

Query: 172  LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              F+ +FG D  Y+ L  H    +      ++ +A     PL+ATN+S ++ E D +A D
Sbjct: 183  GEFQDIFGKDNFYIELMDHGLSIESKVTGDLLTIAKKLGAPLLATNDSHYVMEADKDAQD 242

Query: 230  VLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             ++ +     +   +R +     +Y+K+  EM  +F D P+A +NT+EIA RC+ I   H
Sbjct: 243  AMLCINSGATLDDPNRFKFEGSGYYIKSAEEMRELFKDHPDACDNTLEIAERCNVIFDDH 302

Query: 289  --APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                 +P+F   +C +   E    L+ K   GLE R        G    +  ++ D+E  
Sbjct: 303  EDGAFMPQF---DCPEGWDETSLFLK-KVEEGLEKRY------DGNPPMEVLKQADYECG 352

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI +M+F GYFL+VAD+I WAK++ + VGPGRGS AG++ AYA+ IT++DPL+  L+FER
Sbjct: 353  VICQMQFCGYFLVVADYINWAKEHGVMVGPGRGSAAGAMVAYAMGITELDPLKHGLIFER 412

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+S+PD D+DF  + R  V+ YV +KYGH++VAQ + +G+++ K AL+D  R + 
Sbjct: 413  FLNPERVSLPDIDVDFDPEGRMRVLGYVADKYGHDKVAQCVIYGTIKTKQALKDSARIMG 472

Query: 467  MPYSQVDRLCKLIPNDPA----HPVSLQAIADDS--RFREARL------ADPSVDRLLEI 514
             P+    R+ + +P  PA      +S+  I D S  R+ EAR       +DP V R+ E 
Sbjct: 473  FPFEMGTRITEALP--PAATGGKDISVHDIFDPSAKRYAEAREYRELYDSDPEVKRITEE 530

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDF 573
            ++ +EGL R    HA   ++G  P++   P+    R+D  V T F     E  GL+K DF
Sbjct: 531  AKGIEGLIRQTGVHACATIMGSAPITDTSPLLE--RTDGTVTTTFEYHTCETLGLVKMDF 588

Query: 574  LGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL  LT+++ +L  +   G  V D + IP DD ETY LL+   TLG+FQL+S GMR  L
Sbjct: 589  LGLSNLTVIRDTLTNIEHNGKGVIDYTKIPLDDRETYQLLSRGDTLGVFQLDSDGMRSLL 648

Query: 633  EGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQ 686
            + ++PD   DI AL++LYRPGP  +D+   Y  RKNG +KI  IHP +D  LK    ET 
Sbjct: 649  KTLKPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELDEPLKQVLDETY 708

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+IIYQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  A
Sbjct: 709  GLIIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEAA 768

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              I+E+L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N  K   + 
Sbjct: 769  EAIWEILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKNKTALYL 828

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM--EASADKPFDS 864
             +AR+  IQ++ P VN    ++    + + + L AI+ VG    + I+    +    + +
Sbjct: 829  GEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGENAVKDIIAERETGRGKYVN 888

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              DF  RV    LNRR++ESL+ AGA D    +R  L    ++       +++ +     
Sbjct: 889  FMDFIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHESAIDSVVGLKRKQAEGQF 948

Query: 925  NIFAHEKGTFSDKITLEKFSVE-----NSSVRFENEQRVLGFYFSGHPLDVYKPIL---R 976
            ++F+  + + +D +     +V      +   + + E+ +LG Y S HPL   + +L   R
Sbjct: 949  DLFSDTEDSGADAMGDATVAVPDIEEWDKKDKLKFERDMLGLYVSDHPLSGMQAVLAGMR 1008

Query: 977  KMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +M I    +   T+  G  + LA ++ +  ++ ++KG+    VT  +     +  FF
Sbjct: 1009 EMSIAHLIDRAPTMPSGQQVTLAGLITNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065


>gi|126663019|ref|ZP_01734017.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium BAL38]
 gi|126624677|gb|EAZ95367.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium BAL38]
          Length = 1512

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 362/1084 (33%), Positives = 569/1084 (52%), Gaps = 91/1084 (8%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-------- 58
            K  ++ HL  H+ +S+L+  +++N+++   A  + PA+A+TDT N+  A  F        
Sbjct: 257  KDAAYAHLHNHTQFSVLQSTIAINDLVKASAKFKMPAVAMTDTGNMMGAFHFVSAVMNHN 316

Query: 59   -------------SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                          ++     I+PI+GC+ +I      K              +VLL   
Sbjct: 317  KAAKAKIEAAIEAGEEPTEIEIKPIVGCEFNICDDHKDKTKKDNGN------QVVLLAKN 370

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
             +GY  L ++ S  Y  D      RI    + +   E +++L+G   G I          
Sbjct: 371  KKGYHNLAKMSSIAYT-DGFYYVPRIDRKIVAQY-KEDIMVLSGNLYGEIPSKILNVGES 428

Query: 166  VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEED 224
             AE+ L+ +K+ FG   Y+ L RH+  D  R +Q ++  A  H + L+ATNN+ ++++ED
Sbjct: 429  QAEEALIWWKEQFGSDFYLELMRHKQEDENRVNQTLIAFAKKHNVKLIATNNTYYVNKED 488

Query: 225  YEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEI 277
              AHD+L+ V      +T + +    R      ++Y K+  EM  +F+DLPEA+ N  EI
Sbjct: 489  ANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSGDEMKQLFADLPEAIINIQEI 548

Query: 278  ARRCSFILQVHAPILPRFI--------EKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
              +          +LP+F         E   D   + E N LR+    G E R  +    
Sbjct: 549  IDKVEAYSLYRDVLLPKFKIPDEFEVPEDAEDGGVRGENNYLRHLTYLGAEKRYPE---- 604

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                  D ++RLDFEL  I+   + GYFLIV DFI  A+K ++ VGPGRGS AGS  AY 
Sbjct: 605  ---LTDDIKERLDFELLTISNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAAGSAVAYC 661

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L IT+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV NKYG  +VAQIIT+
Sbjct: 662  LGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGSNQVAQIITY 721

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLADP- 506
            G +  K+A+RD  R L +P  + DR+ KLIP       +L      D+S  ++A  ++  
Sbjct: 722  GKMATKSAIRDTARVLDLPLFEADRIAKLIPGMMPSKWNLARFLAEDESEVKKALRSEEF 781

Query: 507  -SVDRLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
              V  L+EI+               LEG  R+   HA G++I    ++  VP+     SD
Sbjct: 782  DKVKELIEIANSEDLAGETIQQAKVLEGSMRNTGIHACGVIITPSDITNFVPVTTAKDSD 841

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611
            L VTQF+    E AGL+K DFLGLKTLTL++ ++  +  R G+ +D    P DD +TY L
Sbjct: 842  LYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRLGIDLDPDNFPIDDEKTYEL 901

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                 T+G+FQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RKNG+E+I
Sbjct: 902  FQRGETVGVFQYESPGMQKYMKDLKPTVFADLIAMNALYRPGPLEYIPSFVRRKNGEEEI 961

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
                   +  L ET G+ +YQEQVM ++Q L+G+S  +ADVLR+AMGKK  E ++K K +
Sbjct: 962  KYDLEACEEYLGETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKQIEVLNKMKPQ 1021

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            FI+ A++ G    +   I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA 
Sbjct: 1022 FINQAAEKGHDPVVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAV 1081

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTA 850
            ++  M++++++  F ++ ++  +Q++ P VN     F V +N  + + + A+KGVG    
Sbjct: 1082 LSNNMNDIKQVSFFMEECKRMGLQVLGPDVNESYYKFTVNENYAVRFGMGAVKGVGANAV 1141

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS-RMQLLQS----- 904
              I++   + P+ S+ D   ++D +  N++  ESL  AG  D F  + R Q         
Sbjct: 1142 DTIVQNRKEAPYKSIFDVAKKIDLRAANKKAFESLALAGGFDGFTDTHRAQYFHHDGDGI 1201

Query: 905  --LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              L+   +Y    ++N  +   ++F         +  +      ++  +   E+ V+G Y
Sbjct: 1202 TFLEKAIRYGSKFQENENSSQVSLFGDASEVQIAEPIVPPCDDWSTMEKLAKEKEVVGIY 1261

Query: 963  FSGHPLDVYKPILRKM------GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             SGHPLD YK  ++         +K  E+ V    G N+    +V + Q +  + G+  G
Sbjct: 1262 ISGHPLDDYKYEMKYFCNAKLESLKSLEQHV----GKNLSFGGIVTNVQHRTAKNGN--G 1315

Query: 1017 WVTF 1020
            W +F
Sbjct: 1316 WGSF 1319


>gi|145594342|ref|YP_001158639.1| DNA polymerase III subunit alpha [Salinispora tropica CNB-440]
 gi|145303679|gb|ABP54261.1| DNA polymerase III, alpha subunit [Salinispora tropica CNB-440]
          Length = 1177

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 382/1077 (35%), Positives = 575/1077 (53%), Gaps = 76/1077 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YS+L+GA  L ++  ++     PA+A+TD  N+  A +F ++A AAG++P
Sbjct: 4    SFAHLHVHTEYSMLDGAARLKDLFAEVNRQGMPAVAMTDHGNMHGANDFYKQAMAAGVKP 63

Query: 70   IIGCQLDIDMQDNL--KMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            I+G +  +  +     K    G+        +       + +      G   L +L SR 
Sbjct: 64   ILGIEAYVAPESRFHKKRVRWGRPEQKSDDVSGSGGYTHMTIWAKNKVGLHNLFKLTSRS 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +      +  R+    L E  +EGLI  TG  SG +      +    A K    ++ +FG
Sbjct: 124  FTEGFFVKWPRMDTELLAE-HSEGLIATTGCPSGEVQTRLRLDQYDEALKAAAKYQDIFG 182

Query: 180  -DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
             +  ++ +  H G D  R    ++ ++++  ++P V TN+S +  +   EAHDVL+ V  
Sbjct: 183  KENFFLEVMDH-GIDIERRVRQELAEISHKLDIPPVVTNDSHYTYQAQSEAHDVLLCVQT 241

Query: 237  STVVSQKDRPRV-TPDHYLKNRSEMVSI-FSDLPEA-LENTVEIARRCS----FILQVHA 289
            +  V+  +R R     +Y+K+  EM  +  S+L  A   NT+ +A        F  +   
Sbjct: 242  AANVADPNRFRFDGSGYYIKSADEMRGVDSSELWRAGCRNTLLVAEMVDPAGMFDFR--- 298

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
             ++PRF   E +     +E+  R +   GL  R   G        + + ++ ++EL VI 
Sbjct: 299  NLMPRFPVPEGE----TDESWFRKETFKGLARRFPNGV------PETHLKQAEYELGVII 348

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F  YFL+VADFIQWAK   I VGPGRGS AGS+ AYAL ITD+DPL   L+FERFLN
Sbjct: 349  QMGFPSYFLVVADFIQWAKGEGIAVGPGRGSAAGSLVAYALGITDLDPLPHGLIFERFLN 408

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPD DIDF + RR EVI+YV  K+G ++VAQI TFG+++AKAA++D  R L  PY
Sbjct: 409  PERVSMPDVDIDFDERRRGEVIKYVTEKWGEDKVAQIATFGTIKAKAAIKDSARVLGYPY 468

Query: 470  SQVDRLCKLIPNDPA---HPVSLQAIAD--DSRFREAR------LADPSVDRLLEISQKL 518
            +  DR+ K +P  PA     + L  I D   SR+ EA        +DP V ++++ ++ +
Sbjct: 469  AVGDRITKAMP--PAVMGKDIPLTGIFDPQHSRYAEAGEIRGLYESDPDVKKVIDTARGI 526

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R    HAAG+++   P+   +P+ R       +TQF+    E  GL+K DFLGL+ 
Sbjct: 527  EGLIRQTGVHAAGVIMSAEPIVDHIPLMRRDADGAIITQFDYPTCESLGLLKMDFLGLRN 586

Query: 579  LTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  +L +  +  G  VDL  +P DD  TY LL+   TLG+FQL+   MR  L  M+P
Sbjct: 587  LTIIDDALKNIESNHGRTVDLLQLPLDDTATYELLSRGDTLGVFQLDGGPMRSLLRTMKP 646

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIY 691
            D  EDI A+++LYRPGP+  ++   Y  RKNG ++I  IHP L +P+   L  T G+I+Y
Sbjct: 647  DNFEDISAVLALYRPGPMGANSHTNYALRKNGLQEITPIHPELAEPLEEILGPTYGLIVY 706

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQV + AQ+L+GYSL +AD+LRRAMGKK KE +DK+   F  G   N  S      +++
Sbjct: 707  QEQVQRAAQVLAGYSLGKADLLRRAMGKKKKEVLDKEFVPFRDGMRANDYSDEAIQTLWD 766

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +L  FADY FNK+H A Y ++SY T ++K +YP E++AA +T   D+ +K+  +  + R+
Sbjct: 767  ILVPFADYAFNKAHTAGYGLVSYWTGYLKANYPAEYMAALLTSVGDDKDKMALYLSECRR 826

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCS 870
              IQ++PP VNT    F      I + LAAI+ VG      IM    +K  +    DF S
Sbjct: 827  MGIQVLPPDVNTSAGPFTPVGRDIRFGLAAIRNVGANVVSAIMRCRGEKGAYTDFYDFLS 886

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ-SLDNIQKYAQWVEKNRTNKHENIFAH 929
            +V++   N++ +ESL+ AGA D   +SR  LL    D I  YA    K    +++   A 
Sbjct: 887  KVEAVVCNKKTIESLIKAGAFDSLDHSRRGLLAVHADAIDAYADVKRKEAVGQYDLFGA- 945

Query: 930  EKGTFSDKITLEKFSV----------ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                F+D    +  +V          +   + FE E  +LG Y S HPL   + +L    
Sbjct: 946  ---GFADSDAGQSTTVMPVIAEGEWDKREKLAFERE--MLGLYVSDHPLFGLEHVLGAAA 1000

Query: 980  ---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               I    E      G  + LA ++   Q++ T++G      T  + A   E  FFP
Sbjct: 1001 DTTIAALSEEGTVPDGTVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1057


>gi|257125251|ref|YP_003163365.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b]
 gi|257049190|gb|ACV38374.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b]
          Length = 1185

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 359/1022 (35%), Positives = 577/1022 (56%), Gaps = 77/1022 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ YSLLEG   ++  ++K       A+AITDT+ +F A+EF +K   AGI+PI
Sbjct: 5    FVHLKLHTEYSLLEGVGKIDEYVEKAKKTGVKALAITDTS-MFGAIEFFKKCKNAGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ +D  + +         F    S+ LL     GY+ L +L S  Y      ++ +
Sbjct: 64   IGLEVFLDGLEKV-------GEF----SLTLLAKNQNGYKNLSKLSSISYSRFTRNRN-K 111

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L++  ++ L +L+GG +  + +      +    + +    K FGD  ++ +    
Sbjct: 112  IKYDELKKY-SDDLYILSGGINSEVVKGILDLENTQVRRVVEKLGKDFGDNFFIEVPAVE 170

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR--- 247
              ++ R+     +        V TN+  + + +D     ++ ++   + +  +       
Sbjct: 171  RLEKARKMLFDIVRKNKFDNFVITNDVYYPNRKDAVLQKIVESIKEGSKIDTEKSENSEI 230

Query: 248  VTPDHYLKNRSEMVSIF-----SDLPEALENTVE-IARRCSFILQVHAPILPRF------ 295
            +  D YLK+ +E+   F     S+  E   N VE I   C+   + H    P++      
Sbjct: 231  LYDDLYLKSENEIEKSFENKEYSEFYETGINNVEKIMENCNVDFEFHHFKFPKYSLPQNI 290

Query: 296  ------------------IEKECDDIQKEE--------ENELRNKAVAGL---EVRLAQG 326
                              ++K   D +K +        + E+    +AG    EV++ + 
Sbjct: 291  SEKEFLRNLVFEGLFHKYLKKSVSDSEKLQLDKNFEIIQKEIAKDEIAGQKLKEVKIREE 350

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
             +    + ++  +R ++EL +I +M ++GYF+IV DFI+++++N + VGPGRGS AGS+ 
Sbjct: 351  LLKN--NLENVLERAEYELEIIDKMGYNGYFIIVWDFIKFSRENGVYVGPGRGSAAGSIV 408

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            +YAL IT+IDPL ++L+FERFLNP+R+SMPD DIDF Q++R+ VI YV NKYG E VA I
Sbjct: 409  SYALNITEIDPLEYNLIFERFLNPERISMPDIDIDFDQEQREIVINYVVNKYGAEYVAHI 468

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
            ITFG+L+A+ A+RDVGR L +   +VD++ K+IP +     +L  I +   FR+    D 
Sbjct: 469  ITFGTLKARLAIRDVGRVLNVSLVKVDKIAKMIPFNTELKDALNNIPE---FRKMYGTDR 525

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
             + ++++ S KLEG  RHAS HAAG+VI    LS  +P Y D ++ +  TQ+ MK +E+ 
Sbjct: 526  EIKKVIDYSLKLEGKVRHASVHAAGVVISKDVLSDEIPTYSDGKTKIVSTQYQMKELEEL 585

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            G++K DFLGLK LT+L+K+++ + + R  K+ L+ IP +D +TY LLT   T+G+FQ ES
Sbjct: 586  GILKMDFLGLKNLTILRKTVENIEKRRKTKIVLNDIPLNDEKTYELLTKADTMGVFQCES 645

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK 683
            +G+R  ++ M+ +  EDIIAL++LYRPGP+ + +V  + N KN + +I  I   +  +L+
Sbjct: 646  AGIRSLMKKMKIEKFEDIIALLALYRPGPLRSGMVDDFINVKNNRTEIKYIDDSLKYILE 705

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+I+YQEQVM+I   ++ YSL EAD LRRA+GKK  E M K +E+F++ A KNG+  
Sbjct: 706  ETYGIILYQEQVMKIVSEMANYSLGEADELRRAIGKKNPELMKKNREKFVTNAEKNGVFS 765

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
              A  I++L+ KF  YGFNKSH+AAYA+I Y TA+ K +YP+EF AA +T E+ N+++  
Sbjct: 766  KKANEIYDLVEKFGGYGFNKSHSAAYALIVYWTAYFKANYPLEFFAAIITTEVHNLDRFV 825

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDN----------RIYYSLAAIKGVGTTTARHI 853
             F  +A++  I I  P VN    DF++ ++           I + L A+KG+G      I
Sbjct: 826  VFVNEAKEKGINIFLPDVNLSDYDFEIEESFENNNEIKKMGIRFGLFAVKGIGAALINEI 885

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
             +   +  F S EDF  R+    + ++ LES + +GALD    +R +  +S+D I +Y+Q
Sbjct: 886  KKERENGDFSSYEDFVYRMKQNGITKKQLESFILSGALDKLNGNRFEKYKSIDKILEYSQ 945

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
               ++  +    +F+ EK  F  K  +EK       V  ENE+  LG Y S HPL+  K 
Sbjct: 946  KKYESEEDLQMILFSGEK-KFKGKFEMEKADEFPQKVLLENEKEYLGIYVSSHPLNEKKR 1004

Query: 974  IL 975
            ++
Sbjct: 1005 LI 1006


>gi|163753129|ref|ZP_02160253.1| DNA polymerase III, alpha subunit [Kordia algicida OT-1]
 gi|161326861|gb|EDP98186.1| DNA polymerase III, alpha subunit [Kordia algicida OT-1]
          Length = 1460

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 373/1092 (34%), Positives = 579/1092 (53%), Gaps = 86/1092 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----- 61
            K+  F HL  HS +S+L+   S+++++          +A+TD  N+  A  F ++     
Sbjct: 258  KNAPFSHLHNHSQFSVLQSTSSISDLVKAAGKYNMQGVALTDHANMMGAFHFVKEVSNYN 317

Query: 62   ---------ACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                     A A G       ++PIIGC+  +         ++ KT       IVLL   
Sbjct: 318  KSIKAKIAEAEATGEAIDAQILKPIIGCEFFV------CENHEDKTRKDNGYQIVLLAKN 371

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
              GY  L ++ S  Y   +G   V      + E   E +I+LTG   G +          
Sbjct: 372  KNGYHNLAKMSSIAYT--KGFYYVPRIDKNVIEQYKEDVIVLTGNLYGEVPNKVLNIGES 429

Query: 166  VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEED 224
             AE+ LL +K+ F D LYV + RH   D  R ++V V+LA  HE+ LVATNNS ++++ED
Sbjct: 430  QAEEALLWWKETFQDDLYVEIMRHNQEDENRVNEVLVRLAKKHEVKLVATNNSYYIAQED 489

Query: 225  YEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEI 277
              AHDVL+ V      +T + +    R      ++Y K+  EM ++F DLP+A+ +  EI
Sbjct: 490  ATAHDVLLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSPDEMKTLFKDLPDAILSIQEI 549

Query: 278  ARRCSFILQVHAPILP--------RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
              +          +LP        +F E + D  ++ E   LR+    G + R       
Sbjct: 550  VDKVEPFELARDVLLPAFDIPEEFQFEEDKIDGGKRGENKYLRHLTYEGAKKRY------ 603

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
             G    +  +RLDFEL  I    + GYFLIV DFI+ A+  ++ VGPGRGS AGSV AY 
Sbjct: 604  -GEITPEIEERLDFELGTIENTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVVAYC 662

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L IT+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV +KYG  +VAQIIT+
Sbjct: 663  LWITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVIDKYGANQVAQIITY 722

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSV 508
            G++ AK+++RD  R L +P S+ DR+ KLIPN     +  ++ A+   +FR   +    +
Sbjct: 723  GTMAAKSSIRDTARVLDLPLSEADRIAKLIPNTKLAKIFGKSEAELKQKFRSEEVL--LI 780

Query: 509  DRLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
            + L+ IS++             LEG  R+   HA G++I    +++ VP+     SD+  
Sbjct: 781  NELINISEEDGLAAETVNMARVLEGSVRNTGIHACGVIITPDDITKFVPVALAKDSDMYC 840

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTT 614
            TQF+   +E AGL+K DFLGLKTLTL++ ++  +  +  V +D+  IP DD ETY L   
Sbjct: 841  TQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKLVKYKHDVDIDIENIPLDDEETYALFQR 900

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
              T+G+FQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RK+G+E I   
Sbjct: 901  GETVGVFQYESPGMQKHMKSLKPTTFADLIAMNALYRPGPMEYIPSFIRRKHGEEDIEYD 960

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
                   L+ET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK K  +DK K +FIS
Sbjct: 961  LDACQEYLEETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQKAVLDKMKPKFIS 1020

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             AS  G ++     I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA ++ 
Sbjct: 1021 QASAKGHAEDKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSN 1080

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHI 853
             M++++ I  F ++ ++  + ++ P VN     F V D   + + + AIKGVG    + I
Sbjct: 1081 NMNDIKTITFFMEECKRMKLDVLGPDVNESFYKFTVNDEGAVRFGMGAIKGVGHGAVKTI 1140

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS-RMQLLQS-------L 905
            ++  ++  + S+ D   R+D +  N++  E+L  AG  D FG + R Q   +       L
Sbjct: 1141 VKERSEGKYKSVFDLAKRIDLRAANKKAFENLALAGGFDSFGDTHRAQYFHTENDGITFL 1200

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +   KY    ++N+ +   ++F        ++  +       +  +   E+ V+G Y SG
Sbjct: 1201 EKAVKYGAKFQENKNSAQVSLFGEASEVQIEEPKVPPCEEWGTMEKLAREKEVVGIYISG 1260

Query: 966  HPLDVYKPILRKMGIKG---YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS- 1021
            HPLD +K  + K   KG   Y   +       I  A +V   Q + ++ G   GW  F+ 
Sbjct: 1261 HPLDDFKAEM-KFFCKGDLSYFSRMEEYVNREIPFAGVVTEVQHRVSKNGK--GWALFTV 1317

Query: 1022 -EPAKEYEANFF 1032
             + ++ YE   F
Sbjct: 1318 EDYSESYEFRIF 1329


>gi|167754597|ref|ZP_02426724.1| hypothetical protein CLORAM_00099 [Clostridium ramosum DSM 1402]
 gi|167705429|gb|EDS20008.1| hypothetical protein CLORAM_00099 [Clostridium ramosum DSM 1402]
          Length = 1017

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 356/971 (36%), Positives = 555/971 (57%), Gaps = 56/971 (5%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           HLQV+SSYS     + + +++ K +     A+A+TD +N++ A+E ++ A   GI+ + G
Sbjct: 4   HLQVYSSYSFQNSTILIEDLVKKASDLHYEALALTDKDNMYGAMELAKYAKKYGIKAVFG 63

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            +  +++   +         +P    ++LL     GY  L+++ S + L ++G  S+   
Sbjct: 64  LEASVEINHEI---------YP----LLLLARDVTGYFDLVKITSEICLSERGAISLE-A 109

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-G 191
           LS  +E     L +++    G I+R         A K L  FK  F +  YV LQ H   
Sbjct: 110 LSLYRE----HLFVISACKEGIIERLILKELDSEALKYLELFKNTFNN-FYVGLQNHGIA 164

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             +    ++V LA    +P+  TN   +L++++    D+L A A   ++  + + + T  
Sbjct: 165 MQQKLNERLVALATLQNIPICVTNEVRYLNKDEAFTLDLLQASAKGMMLDLEHQVQ-TDQ 223

Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKECDDIQKEEE 308
            YLK+  EM S+F    + +ENT +I R C+  +   Q+H P  P  + K+ D       
Sbjct: 224 LYLKSSFEMESLFD--KKYIENTNDIIRLCNVTIPTDQMHLPKYP--VPKDGD-----AG 274

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
           + LR   + GL+ R     I       +Y +RL  EL VI +M F+ YFLIV D++++AK
Sbjct: 275 DYLRQLCLVGLKKRFKGKNIP-----NEYIERLKKELTVINKMGFNDYFLIVFDYVRYAK 329

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            + I VGPGRGS AGS+ AY L IT +DPLR+ LLFERFLN +R+SMPD DIDF  DRRD
Sbjct: 330 MHKILVGPGRGSAAGSLVAYVLGITGVDPLRYDLLFERFLNEERISMPDIDIDFQDDRRD 389

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
           EV+ YV  KYGHE VAQI+TF +   K A++D+G+ L +P  +++ L K IP +  +  S
Sbjct: 390 EVVNYVTEKYGHEHVAQIVTFSTYGPKVAIKDLGKVLGVPLPRLELLTKNIPTNYKNRKS 449

Query: 489 LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            + + + S  F+     DP++ +++     +E L R+ STHAAG+V+ +  L Q+VP+ R
Sbjct: 450 AREVFETSYSFQSMVNKDPALRKIMPAVFIVEKLPRNISTHAAGVVLSNDVLDQVVPLVR 509

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDH 606
              + + VTQ++  +IE+ GL+K DFLGLK LT++   + D      V+++++ I   D 
Sbjct: 510 GPNNGV-VTQYSKDYIEEVGLLKMDFLGLKNLTIIDYIIKDIAKNHQVEININDIDLQDK 568

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
           +TY +++   T GIFQLESSGM+  L  MQ DC++D+IA ++L+RPGP+ NI  Y  RK 
Sbjct: 569 KTYEMISRGDTFGIFQLESSGMKNLLVKMQCDCLDDVIAAIALFRPGPMANIPSYIARKK 628

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
           GKE I      + P+LK T G+++YQEQ+MQ AQL++G+SL++AD+LR+AM KK    M 
Sbjct: 629 GKEPITYPLECLKPILKSTYGILLYQEQIMQAAQLVAGFSLAKADILRKAMSKKTASLMK 688

Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             K  FI G   NG S+  AV +FEL+ +FA+YGFNKSH+  Y  I+Y  A++K ++P+E
Sbjct: 689 AMKSEFIQGGIANGFSELEAVKVFELIERFANYGFNKSHSVVYGYIAYWLAYLKANFPLE 748

Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
           F +A ++ E  +        Q+ +++ ++++ PS+N     FKV D  I YSL AIK VG
Sbjct: 749 FFSALLSNEQSSDASKLSCIQEGKKYGVKLLAPSINYSTDRFKVEDGNIRYSLLAIKNVG 808

Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               + I     +  F  + DF SR++S KLN ++L+SL+ AGA D F  +R  + Q+L 
Sbjct: 809 YAGYKAIEAERQNGTFKDIFDFVSRMESSKLNSKMLDSLIMAGAFDEFKLNRTTIKQNLH 868

Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
            I +YA+   KN     E             +T+ +   +N     E E+ VLG Y + H
Sbjct: 869 KIMEYAEL--KNSIGIEE----------PPILTIVR---DNRIKVLEEEKMVLGVYLTMH 913

Query: 967 PLDVYKPILRK 977
           P+ + K  L++
Sbjct: 914 PIALIKNNLKE 924


>gi|312888892|ref|ZP_07748454.1| DNA polymerase III, alpha subunit [Mucilaginibacter paludis DSM
            18603]
 gi|311298633|gb|EFQ75740.1| DNA polymerase III, alpha subunit [Mucilaginibacter paludis DSM
            18603]
          Length = 1195

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 381/1090 (34%), Positives = 592/1090 (54%), Gaps = 94/1090 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VH+ +SLL+GA  ++ +  K AAD   A+AITD  N+F   +F  +A    ++
Sbjct: 2    PDFSHLHVHTQFSLLDGAADISKLYKKAAADGMKALAITDHGNMFGVFKFVAEAGKHNVK 61

Query: 69   PIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PI+GC+  + D +   + T + K         + L   AEGY+ LI+L S  Y+     +
Sbjct: 62   PIVGCEFYVVDDRHKKQFTKEKKD---VRRHQLFLAKNAEGYKNLIKLCSLGYMEGLYSK 118

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              RI    + +   +GLI  +      + +A    + + AE     +  LFG+  Y+ LQ
Sbjct: 119  WPRIDKELILKY-HKGLIATSCCIGASVPQAILKATEEEAETEFKWWLDLFGEDYYIELQ 177

Query: 188  RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH   ++    + +++ A  + +  + +N+S ++ ++D  AHD+L+ V    + S    P
Sbjct: 178  RHEIPEQTIINNTLLKYAKKYNVKTICSNDSHYVDQQDSNAHDILLCVNTGDMQST---P 234

Query: 247  RVTPDH--------------YLKNRSEMVSIFSDLPEALENTVEIARRCSF------ILQ 286
              T +               Y K ++EM  +F D+PE+L+NT EI  +         I+ 
Sbjct: 235  IATDEEGGKGYRFGFPNDQFYFKTQAEMGQLFHDIPESLDNTNEIVDKVDVLKLKRDIML 294

Query: 287  VHAPILPRF---IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
             + PI P F      E D + + E   L++    G + R    ++       +  +R++F
Sbjct: 295  PNFPIPPEFAIHTGPESDTLNQWEY--LKHLTFTGAKERYIDISL-------ETEERINF 345

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL  I  M F+GYFLIVADFI+  +   + +GPGRGS AGSV AY   IT+IDP++++LL
Sbjct: 346  ELFTIRTMGFAGYFLIVADFIKHGRDIGVFIGPGRGSAAGSVVAYCTGITNIDPMKYNLL 405

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNPDR SMPD D DF  + R +VI YV  KYG  +VAQIIT+GS+ A+ +++DVGR
Sbjct: 406  FERFLNPDRKSMPDIDTDFDDEGRQKVIDYVVEKYGKNQVAQIITYGSMAARTSIQDVGR 465

Query: 464  ALQMPYSQVDRLCKLIPN-------DPAHPV-SLQAIADDSRFREARLADPSVDRLLEIS 515
             L MP S+V+ + KL+P+       D    V  L+AI + +  R          ++L  +
Sbjct: 466  VLDMPLSEVNLMKKLVPDTLGITLKDAIEQVPELKAILEGNDLRS---------QVLRAA 516

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            +KLEG  R+   HAAGI+I    L+ +VP+     SDL VTQ++ + IE AG+IK DFLG
Sbjct: 517  EKLEGSVRNTGVHAAGIIIAPDDLTNIVPVAVAKDSDLLVTQYDGRVIEDAGVIKMDFLG 576

Query: 576  LKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            LKTLT+++ +L  + Q  G ++D+  I  DD +TY L     T G FQ ES GM+  L  
Sbjct: 577  LKTLTIIKGALRMIKQNHGREIDIDYIDLDDQKTYELYQRGDTNGTFQFESDGMQMYLRD 636

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
            ++PD  ED+IA+ +LYRPGPI+ I  +  RK+G E I    P ++  L ET G+ +YQEQ
Sbjct: 637  LKPDKFEDLIAMNALYRPGPIEYIPNFIKRKHGLEPITYDLPDMEEYLAETYGITVYQEQ 696

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VM ++Q L+G+S  +ADVLR+AMGKK  E ++K + +F+SGA+  G  K     I+    
Sbjct: 697  VMLLSQKLAGFSKGDADVLRKAMGKKQIEILNKMEAQFVSGATAKGHPKDKLTKIWNDWK 756

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNKSH+  YA+++YQTA++K HYP E++A+ +    +N+EKI  F ++ R+   
Sbjct: 757  AFAQYAFNKSHSTCYALVAYQTAYLKAHYPSEYMASVLN-NQNNMEKISFFMEECRRMGT 815

Query: 815  QIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRV 872
             ++ P VN   V F   G+  I + L+ IKGVG      I+E    +  F S+ +F  R 
Sbjct: 816  LVLGPDVNESSVLFTATGNGNIRFGLSGIKGVGDKAVESIIEERDKNGAFTSVYEFAQRS 875

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQ--------LLQSLDNIQKYAQWVEKNRTNKHE 924
            ++K +NR+  E++V++GA D FG+ R Q        +L  ++ + KYA   +  + +   
Sbjct: 876  NTKAVNRKSYENMVYSGAFDSFGFKRAQFFAKTENGVLSGIERLTKYANDYQNTQNSSQS 935

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK------------ 972
            ++F     ++  + T+ +        + + E+ V+G Y +GHPLD YK            
Sbjct: 936  SLFGGSVASYIPEPTMPEAEEFPLIEKLKYEKEVIGIYLTGHPLDNYKIELERFCKHTVA 995

Query: 973  --PILRKMGIK-GYEESVATIRGNNIR-------LAAMVVSKQQKKTRKGSRIGWVTFSE 1022
               ++++M  K G EE+   I  NN+R       +  ++ S Q K T+ G   G   F +
Sbjct: 996  DLKLIQRMKNKEGGEET--EIAFNNLRRTASELSIGGLLSSVQHKTTKTGKPFGTFVFED 1053

Query: 1023 PAKEYEANFF 1032
                YE   F
Sbjct: 1054 YFDSYEFALF 1063


>gi|150010065|ref|YP_001304808.1| DNA polymerase III subunit alpha [Parabacteroides distasonis ATCC
            8503]
 gi|262382633|ref|ZP_06075770.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_33B]
 gi|298374425|ref|ZP_06984383.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_19]
 gi|149938489|gb|ABR45186.1| DNA polymerase III alpha subunit [Parabacteroides distasonis ATCC
            8503]
 gi|262295511|gb|EEY83442.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_33B]
 gi|298268793|gb|EFI10448.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_19]
          Length = 1267

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 371/1124 (33%), Positives = 588/1124 (52%), Gaps = 122/1124 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------- 61
            F+HL VH+ YSLL+G  S++ ++DK   D   AIA+TD   +F   EF  K         
Sbjct: 4    FIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVSKKNSKPL 63

Query: 62   ------------------------------------ACAAGIQPIIGCQLDIDMQDNLKM 85
                                                A A+  +PIIGC+       N + 
Sbjct: 64   GIIKDSEKELKPLLAKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYC--ARNGRH 121

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
            +        +   +++L     GY+ LI++VS  +   +G          L E   E LI
Sbjct: 122  SKLASQDDRSGWHLIVLAKNKNGYKNLIKMVSLSWT--EGFYGRPRIDKELLEKYHEDLI 179

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV----- 200
            + +    G I +         AE+ +  FK LFG+  Y+ +QRH  +D   +  +     
Sbjct: 180  ICSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADCTIFPHQQ 239

Query: 201  ------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                  ++LA+ H + L+ATN+  F++ +D EAHD L+ ++    +    R R +   ++
Sbjct: 240  EVNKVLIELAHKHNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMRYSKQEWM 299

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI------------------ 296
            K  +EM +IF+D+PEAL NT+EIA +  F      PI+P F                   
Sbjct: 300  KTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESYRQKLTEH 359

Query: 297  --------EKECDDIQKEEENELRNKAVAGLE----VRLAQGAIAKGYH----------- 333
                    ++  + +  EEE   + K + G +    ++L    +AK  +           
Sbjct: 360  DLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAKELYGDPL 419

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392
              + ++RL+FEL+++  M F GYFLIV DFI+ A++   + VGPGRGS AGS  AY L I
Sbjct: 420  NDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAVAYCLGI 479

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T IDP+++ LLFERFLNPDR+S+PD D DF  D R EV+R+V  KYG ERVA IIT+G++
Sbjct: 480  TKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHIITYGTM 539

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ---AIADDSRFREARLA-DPSV 508
              K+A++DV R  ++P S+ +RL KL+P+        +   AI      +EA    DP  
Sbjct: 540  ATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVPELKEAANGNDPLA 599

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               L+ +Q LEG  R+   HA G++IG   +S +VP+     +D   ++ VTQ+    IE
Sbjct: 600  RDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQYEGSVIE 659

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
            + GLIK DFLGLKTL++++++++ +    G  +D+  I  +D +TY L     T G FQ 
Sbjct: 660  ETGLIKMDFLGLKTLSIIKEAIENVKLTTGHDLDIDHISLEDPKTYKLYCDGKTTGTFQF 719

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L+ +QP   ED+IA+ +LYRPGP+D I  +  RK GKE+I    P+++  LK
Sbjct: 720  ESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPVMERYLK 779

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+ E+M+  K +F++G   NG  +
Sbjct: 780  DTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGQANGYKE 839

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                 I+    KFA Y FNKSHA  Y+ ++YQTA++K ++P E++AA ++  + N+  I 
Sbjct: 840  ETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANFPSEYMAAVLSRSLSNITDIT 899

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKP 861
            KF  + +   IQ++ P VN   + F V  N+ I + L A+KGVG +  ++I+E    + P
Sbjct: 900  KFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGESAVQNIIEERKKNGP 959

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNIQKYAQW 914
            + S+ DF  RV+    N++ +ES+  AGA D FG  R Q           LD + +Y   
Sbjct: 960  YKSIFDFVERVNLTACNKKNIESMALAGAFDNFGIQREQFFTDSGKGELFLDTLVRYGNK 1019

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
             + +++    ++F  +      K  + +    +   R   E+ ++G Y S HPLD Y+ I
Sbjct: 1020 YQMDKSTAVNSLFGGDALIAIAKPEIPQCERWSDLERLNKEKELVGIYLSAHPLDEYRII 1079

Query: 975  LRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            L+ +   G  E     T++G  + L  +V   ++  T+ G   G
Sbjct: 1080 LKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTKNGKPYG 1123


>gi|256838875|ref|ZP_05544385.1| DNA polymerase III alpha subunit [Parabacteroides sp. D13]
 gi|256739794|gb|EEU53118.1| DNA polymerase III alpha subunit [Parabacteroides sp. D13]
          Length = 1267

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 371/1124 (33%), Positives = 588/1124 (52%), Gaps = 122/1124 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------- 61
            F+HL VH+ YSLL+G  S++ ++DK   D   AIA+TD   +F   EF  K         
Sbjct: 4    FIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVSKKNSKPL 63

Query: 62   ------------------------------------ACAAGIQPIIGCQLDIDMQDNLKM 85
                                                A A+  +PIIGC+       N + 
Sbjct: 64   GIIKDSEKELKPLLAKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYC--ARNGRH 121

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
            +        +   +++L     GY+ LI++VS  +   +G          L E   E LI
Sbjct: 122  SKLASQDDRSGWHLIVLAKNKNGYKNLIKMVSLSWT--EGFYGRPRIDKELLEKYHEDLI 179

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV----- 200
            + +    G I +         AE+ +  FK LFG+  Y+ +QRH  +D   +  +     
Sbjct: 180  ICSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADCTIFPHQQ 239

Query: 201  ------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                  ++LA+ H + L+ATN+  F++ +D EAHD L+ ++    +    R R +   ++
Sbjct: 240  EVNKVLIELAHKHNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMRYSKQEWM 299

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI------------------ 296
            K  +EM +IF+D+PEAL NT+EIA +  F      PI+P F                   
Sbjct: 300  KTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESYRQKLTEH 359

Query: 297  --------EKECDDIQKEEENELRNKAVAGLE----VRLAQGAIAKGYHA---------- 334
                    ++  + +  EEE   + K + G +    ++L    +AK  +           
Sbjct: 360  DLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAKELYGDPL 419

Query: 335  -QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392
              + ++RL+FEL+++  M F GYFLIV DFI+ A++   + VGPGRGS AGS  AY L I
Sbjct: 420  DDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAVAYCLGI 479

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T IDP+++ LLFERFLNPDR+S+PD D DF  D R EV+R+V  KYG ERVA IIT+G++
Sbjct: 480  TKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHIITYGTM 539

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ---AIADDSRFREARLA-DPSV 508
              K+A++DV R  ++P S+ +RL KL+P+        +   AI      +EA    DP  
Sbjct: 540  ATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVPELKEAANGNDPLA 599

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               L+ +Q LEG  R+   HA G++IG   +S +VP+     +D   ++ VTQ+    IE
Sbjct: 600  RDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQYEGSVIE 659

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
            + GLIK DFLGLKTL++++++++ +    G  +D+  I  +D +TY L     T G FQ 
Sbjct: 660  ETGLIKMDFLGLKTLSIIKEAIENVKLTTGHDLDIDHISLEDPKTYKLYCDGKTTGTFQF 719

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L+ +QP   ED+IA+ +LYRPGP+D I  +  RK GKE+I    P+++  LK
Sbjct: 720  ESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPVMERYLK 779

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+ E+M+  K +F++G   NG  +
Sbjct: 780  DTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGQANGYKE 839

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                 I+    KFA Y FNKSHA  Y+ ++YQTA++K ++P E++AA ++  + N+  I 
Sbjct: 840  ETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANFPSEYMAAVLSRSLSNITDIT 899

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKP 861
            KF  + +   IQ++ P VN   + F V  N+ I + L A+KGVG +  ++I+E    + P
Sbjct: 900  KFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGESAVQNIIEERKKNGP 959

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNIQKYAQW 914
            + S+ DF  RV+    N++ +ES+  AGA D FG  R Q           LD + +Y   
Sbjct: 960  YKSIFDFVERVNLTACNKKNIESMALAGAFDNFGIQREQFFTDSGKGELFLDTLVRYGNK 1019

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
             + +++    ++F  +      K  + +    +   R   E+ ++G Y S HPLD Y+ I
Sbjct: 1020 YQMDKSTAVNSLFGGDALIAIAKPEIPQCERWSDLERLNKEKELVGIYLSAHPLDEYRII 1079

Query: 975  LRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            L+ +   G  E     T++G  + L  +V   ++  T+ G   G
Sbjct: 1080 LKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTKNGKPYG 1123


>gi|293192339|ref|ZP_06609450.1| DNA polymerase III, alpha subunit [Actinomyces odontolyticus F0309]
 gi|292820254|gb|EFF79248.1| DNA polymerase III, alpha subunit [Actinomyces odontolyticus F0309]
          Length = 1180

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 373/1076 (34%), Positives = 578/1076 (53%), Gaps = 74/1076 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  HS YS+L+GA     + ++ A   QPAI +TD   LF A +F      AG++P
Sbjct: 4    SFVHLHNHSEYSMLDGAAKTKAMAEEAARLGQPAIGLTDHGYLFGAFDFYTNCKNAGVKP 63

Query: 70   IIGCQLDI-------DMQDNLKMTNQGK----TPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            IIG +  +       D Q  L      +    +   +   + L+     G   L  L S 
Sbjct: 64   IIGLEAYVTPGTSRFDRQKVLWGEPWQRADDVSAGGSYNHLTLVAYNTTGMHNLFRLGSY 123

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
                 Q  +  R     L +   EGLI+ TG  SG +           A       + +F
Sbjct: 124  ASTDGQFGKWPRADKELLSQF-HEGLIVFTGCPSGAVQTRLRLGQWDEAVAEAAELRDIF 182

Query: 179  G-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            G +  YV +  H G D  R    QV+++A     PLVATN++ ++  ED +  D L+ + 
Sbjct: 183  GAENFYVEVMDH-GIDIERRTHQQVLEIAKLMNAPLVATNDAHYVKREDRKIQDALLCIN 241

Query: 236  HSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSF---ILQVHAPI 291
              + ++  DR +   D +Y+++  EM +++S+LP A ++T+EIA RC       +  A  
Sbjct: 242  SGSRINDPDRFKFDGDGYYIRSSDEMRALWSELPGACDSTLEIAERCDVHFTTTKEGANY 301

Query: 292  LPRFIEKECDD----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
            +P F   E +D      KE E  LR++   G+                D R++  +E +V
Sbjct: 302  MPDFPVPEGEDKTSWFIKEVERGLRDRFPNGI--------------PDDVRKQAQYEEDV 347

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I +M F GYFL VAD+I WAK   I VGPGRGSGAGS+ AYAL IT+++PL   L+FERF
Sbjct: 348  IIKMGFPGYFLTVADYINWAKSQGIRVGPGRGSGAGSMVAYALKITELNPLEHGLIFERF 407

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPDFD+DF + RRDEVI YV+ KYG +R++Q++T+G+++ K AL+D  R L  
Sbjct: 408  LNPERISMPDFDVDFDERRRDEVIAYVKRKYGEDRISQVVTYGTIKTKQALKDSARILGK 467

Query: 468  PYSQVDRLCKLIPNDPA---HPVSLQAIADD--------SRFREARLADPSVDRLLEISQ 516
             +   ++L K +P  PA     +++  I D+        S FR+    +P    +++ + 
Sbjct: 468  DFKVGEQLTKALP--PAIMGKDITVHGIFDEKDKRYAEASEFRKFYEENPDTHEVVQYAL 525

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             LEGL R    HA  +++    L+ ++P+ +  +    +TQF+    E  GL+K DFLGL
Sbjct: 526  GLEGLTRQWGVHACAVIMSSHTLTDIIPIMKRPQDGAIITQFDYPTCETLGLLKMDFLGL 585

Query: 577  KTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            + LT++  +L+ +A  G    DL  + FDD +TY LL    TLG+FQL+  GMR  L+ M
Sbjct: 586  RNLTVVSDALENIALNGKPDPDLDHLTFDDKKTYELLGRGDTLGVFQLDGGGMRDLLKLM 645

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVI 689
            +PD  EDI A+ +LYRPGP+  ++   Y  RKNG+++I  IHP L +P+   L  T G+I
Sbjct: 646  KPDNFEDISAVGALYRPGPMGANSHTNYALRKNGRQEITPIHPELAEPLEDILGTTFGLI 705

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQIAQ L+GYSL +AD+LR+AMGKK KE +D+Q + F  G   NG S+     +
Sbjct: 706  VYQEQVMQIAQKLAGYSLGQADILRKAMGKKKKEVLDQQFKGFRQGMVANGYSEESIKAL 765

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++++  F+ Y FNK+H+AAY ++SY TA++K ++P E++AA +T   DN ++   +  + 
Sbjct: 766  WDVVVPFSAYAFNKAHSAAYGLVSYWTAFLKANFPTEYMAALLTSTKDNKDRRALYLAEC 825

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDF 868
            R  +I ++PP VN    +F      I + L AI+ VG      I+E  A+K  F S +DF
Sbjct: 826  RHMDITVLPPDVNASMGNFAPDGEAIRFGLNAIQNVGGPVVDAIVETRAEKGRFASFQDF 885

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF- 927
              +V     N+R ++SL+ AGA D  G++R  LL   D        V++N      ++F 
Sbjct: 886  LDKVPQVVCNKRTIQSLIRAGAFDSMGHTRRALLARCDEAVDAIIDVKRNEAIGQFDLFG 945

Query: 928  --AHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                ++ T S   I +      +   +   E+ +LG Y S HPL   +  L +   + YE
Sbjct: 946  ALGEDEDTGSGLTIDIPDLPEFDRKTKLAAEREMLGLYVSDHPLRGVEAALARH--QDYE 1003

Query: 985  ESVATIRGNN-------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +A + G++       +++A ++     K T++G+     T  + +   +  FFP
Sbjct: 1004 --IAQVVGSDGAMADRIVKIAGLISGVTTKVTKQGNAWAIATIEDMSGSVDVLFFP 1057


>gi|237733766|ref|ZP_04564247.1| DNA polymerase III dnaE [Mollicutes bacterium D7]
 gi|229383104|gb|EEO33195.1| DNA polymerase III dnaE [Coprobacillus sp. D7]
          Length = 977

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 355/971 (36%), Positives = 553/971 (56%), Gaps = 56/971 (5%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           HLQV+SSYS     + + +++ K +     A+A+TD +N++ A+E ++ A   GI+ + G
Sbjct: 4   HLQVYSSYSFQNSTILIEDLVKKASDLHYEALALTDKDNMYGAMELAKYAKKYGIKAVFG 63

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            +  +++   +         +P    ++LL     GY  L+++ S + L ++G  S+   
Sbjct: 64  LEASVEINHEI---------YP----LLLLARDVTGYFDLVKITSEICLSERGAISLE-A 109

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-G 191
           LS  +E     L +++    G I+R         A K L  FK  F +  YV LQ H   
Sbjct: 110 LSLYRE----HLFVISACKEGIIERLILKELDSEALKYLELFKNTFNN-FYVGLQNHGIA 164

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             +    ++V LA    +P+  TN   +L++++    D+L A A   ++  + + + T  
Sbjct: 165 MQQKLNERLVALATLQNIPICVTNEVRYLNKDEAFTLDLLQASAKGMMLDLEHQVQ-TDQ 223

Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKECDDIQKEEE 308
            YLK+  EM S+F    + +ENT +I R C+  +   Q+H P  P  + K+ D       
Sbjct: 224 LYLKSSFEMESLFD--KKYIENTNDIIRLCNVTIPTDQMHLPKYP--VPKDGD-----AG 274

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
           + LR   + GL+ R     I       +Y +RL  EL VI +M F+ YFLIV D++++AK
Sbjct: 275 DYLRQLCLVGLKKRFKGKNIP-----NEYIERLKKELTVINKMGFNDYFLIVFDYVRYAK 329

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            + I VGPGRGS AGS+ AY L IT +DPLR+ LLFERFLN +R+SMPD DIDF  DRRD
Sbjct: 330 MHKILVGPGRGSAAGSLVAYVLGITGVDPLRYDLLFERFLNEERISMPDIDIDFQDDRRD 389

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
           EV+ YV  KYGHE VAQI+TF +   K A++D+G+ L +P  +++ L K IP +  +  S
Sbjct: 390 EVVNYVTEKYGHEHVAQIVTFSTYGPKVAIKDLGKVLGVPLPRLELLTKNIPTNYKNRKS 449

Query: 489 LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            + + + S  F+     DP++ +++     +E L R+ STHAAG+V+ +  L Q+VP+ R
Sbjct: 450 AREVFETSYSFQSMVNKDPALRKIMPAVFIVEKLPRNISTHAAGVVLSNDVLDQVVPLVR 509

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDH 606
              + + VTQ++  +IE+ GL+K DFLGLK LT++   + D      V+++++ I   D 
Sbjct: 510 GPNNGV-VTQYSKDYIEEVGLLKMDFLGLKNLTIIDYIIKDIAKNHQVEININDIDLQDK 568

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
           +TY +++   T GIFQLESSGM+  L  MQ DC++D+IA ++L+RPGP+ NI  Y  RK 
Sbjct: 569 KTYEMISRGDTFGIFQLESSGMKNLLVKMQCDCLDDVIAAIALFRPGPMANIPSYIARKK 628

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
           GKE I      + P+LK T G+++YQEQ+MQ AQL++G+SL++AD+LR+AM KK    M 
Sbjct: 629 GKEPITYPLECLKPILKSTYGILLYQEQIMQAAQLVAGFSLAKADILRKAMSKKTASLMK 688

Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             K  FI G   NG S+  AV +FEL+ +FA+YGFNKSH+  Y  I+Y  A++K ++P+E
Sbjct: 689 AMKSEFIQGGIANGFSELEAVKVFELIERFANYGFNKSHSVVYGYIAYWLAYLKANFPLE 748

Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
           F +A ++ E  +        Q+ +++ ++++ PS+N     FKV D  I YSL AIK VG
Sbjct: 749 FFSALLSNEQSSDASKLSCIQEGKKYGVKLLAPSINYSTDRFKVEDGNIRYSLLAIKNVG 808

Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               + I     +  F  + DF SR++S KLN ++L+SL+ AGA D F  +R  + Q+L 
Sbjct: 809 YAGYKAIEAERQNGTFKDIFDFVSRMESSKLNSKMLDSLIMAGAFDEFKLNRTTIKQNLH 868

Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
            I +YA+   KN                 D+  +     +N     E E+ VLG Y + H
Sbjct: 869 KIMEYAEL--KNSIG-------------IDEPPILTIVRDNRIKVLEEEKMVLGVYLTMH 913

Query: 967 PLDVYKPILRK 977
           P+ + K  L++
Sbjct: 914 PIALIKNNLKE 924


>gi|315115543|ref|YP_001699725.2| DNA polymerase III subunit alpha [Lysinibacillus sphaericus C3-41]
          Length = 1027

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 361/1034 (34%), Positives = 561/1034 (54%), Gaps = 60/1034 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            + V+ ++H+S  LL+  + L  ++  +   +  A AI +T  L+  L F +    A I  
Sbjct: 2    THVYTKMHTSADLLKSTIRLEQLIPFLLEQKTQACAIVNTK-LYGLLPFCKAMQQAKIHA 60

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G  +++   D             T+P +VL   + EGYQ+L+++ S   + + G    
Sbjct: 61   VMGLSVNVQWHDT------------TLP-LVLYAQSQEGYQQLLKISSAASIREDGV--- 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR-----LLTFKKLFGDRLYV 184
             +   WL+      L +L+              S  +AE +     +     LF    Y+
Sbjct: 105  -LPWKWLEGYAAGCLALLS--------------SDDLAELKDWHGVVSALAHLFQHHFYM 149

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             + R  G     E+++V+      +PLVA  +  FL  ED+ A++V  A+     +    
Sbjct: 150  GITRPGGVALANENELVEWCEGQRIPLVAVQSCYFLRPEDHFAYEVARAIDTGDKLGDTM 209

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                   ++     E  S F+D PE LE   ++   C  I+   +  +P+F       + 
Sbjct: 210  LTAKLQGYFAPTAQEWQSWFTDRPEWLETCGQMLASCRAIIPEMSVQMPKF----PVPVG 265

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +  E+ L  +A +GLE R  Q  I  GY     R+RL +EL +I  M F+ YFL+VADF+
Sbjct: 266  ETAESLLVKEAFSGLEERFNQLDIPYGY-----RERLRYELEIICSMGFADYFLVVADFM 320

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++AK N I  GPGRGS AGS+ AY+L IT +DPL + LLFERFLNP+R+S+PD DIDF  
Sbjct: 321  RFAKDNRILTGPGRGSSAGSLVAYSLAITQVDPLAYGLLFERFLNPERISLPDIDIDFVD 380

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             +R +VI+YV  KYG   VAQIITFG+L AKA  RDV R        ++++ K+IPN P 
Sbjct: 381  SKRHQVIQYVAQKYGKGNVAQIITFGTLSAKAVARDVARVFGFGAEVLEKISKMIPNKPG 440

Query: 485  HPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              ++LQ A+ +    +E    D    R  E++QKLEGL R++STHAAGIVI    L   V
Sbjct: 441  --ITLQKALEESYDLQEWLSEDHQHQRWFEVAQKLEGLPRNSSTHAAGIVIAPSSLVNTV 498

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK-SLDFLAQRGVKVDLSLIP 602
            P+  D    +  TQ+ M  +E +GL+K DFLGL+ LT+L++         G  +D   IP
Sbjct: 499  PI-EDGHEGIYCTQWPMGDVEASGLVKMDFLGLRNLTILEQIRWSIYKAGGPWIDFERIP 557

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
              D +T+ LL +  T GIFQLES GM+QAL  + P    DI+A+ +LYRPGP++ I VY 
Sbjct: 558  MHDEKTFQLLQSGDTSGIFQLESEGMKQALRDIHPTQFLDIVAVNALYRPGPMEFIPVYA 617

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK GKE +V  HP+++P+L+ET GVI+YQEQ+++IA +L+G+S+ +AD+LRRA+ KK +
Sbjct: 618  RRKAGKELVVMPHPVLEPILQETFGVIVYQEQIIKIASVLAGFSMGQADLLRRAVSKKNR 677

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + +++Q+  F+ GA K G  + +A  ++EL+ +FADYGF KSHA AY++ISYQ A++K H
Sbjct: 678  QVLEEQQVTFVQGALKQGYDQHVATEVYELIVRFADYGFPKSHAVAYSIISYQMAYLKAH 737

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            +P  F AA ++    NV+KI++  Q+A+   I   PPS+      F V    I YSLA I
Sbjct: 738  FPQSFYAALLSNATGNVDKIQQLVQEAKDKGIPFYPPSLKDSTKYFTVEQEGIRYSLAGI 797

Query: 843  KGVGTTTARHIMEASADKP--FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            KGV  T    I       P    +L D    + ++    +V+ESL++AGALD     R  
Sbjct: 798  KGVPHTFIESINTLRQTNPQALYNLFDLAVALSAQHFKPKVIESLIYAGALDYLEKDRAV 857

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L+ ++D   K+A+ +   R N+  +I    +  F     ++   +     +  +E+  LG
Sbjct: 858  LIMTIDAALKHAELL---RPNEDIDISTATEFNFGKPKYMQVDDMPQKE-KLIHEKESLG 913

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            FY S HP+   +P    +     E  +  +R G  +++  ++   ++ +T+KG ++ +V 
Sbjct: 914  FYISAHPVTQERPYWADVNCTSRE--LKQMRDGTYVKMIGVMEEVKKIRTKKGEQMAFVQ 971

Query: 1020 FSEPAKEYEANFFP 1033
              +      A  FP
Sbjct: 972  LQDEHGSVSATLFP 985


>gi|325282335|ref|YP_004254876.1| DNA polymerase III, alpha subunit [Deinococcus proteolyticus MRP]
 gi|324314144|gb|ADY25259.1| DNA polymerase III, alpha subunit [Deinococcus proteolyticus MRP]
          Length = 1337

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 325/770 (42%), Positives = 464/770 (60%), Gaps = 42/770 (5%)

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            +  A  LP +  ++C     ++ +   +    G E    +   A   HA    +R ++EL
Sbjct: 430  EAEAGALPAYAHEDCRRASVQDSDTAIDP---GTEEPSEETTRAHHRHALVILRRAEYEL 486

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +VI  M F  YFLIVAD+I WAK  +I VGPGRGSGAGS+ AYA+ IT++DPL F LLFE
Sbjct: 487  SVINNMGFPDYFLIVADYINWAKDQDISVGPGRGSGAGSLVAYAMRITNLDPLEFDLLFE 546

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNPDR+SMPDFDIDF   RR EV+ YVQ KYG ++VAQI TFG++ +KA L+DV R +
Sbjct: 547  RFLNPDRISMPDFDIDFNDARRMEVVEYVQRKYGEDKVAQIATFGTMASKACLKDVARVM 606

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQ----AIADDSRFREARLADPSVDRLLEISQKLEGL 521
             + Y++VD++ KLIP       SL+    A+ D ++  EA   D  +    E +QKLEGL
Sbjct: 607  GVEYTKVDKVSKLIPVKFGKSYSLEQAREAVPDIAQMLEA---DTELRGAYEFAQKLEGL 663

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             RHAS HAAG+VIG   L+ LVP+ RD      V Q++MK +E  GLIK DFLGL+TL+ 
Sbjct: 664  TRHASVHAAGVVIGREDLTNLVPIMRDTSGSGIVCQYDMKSVEDIGLIKMDFLGLRTLSF 723

Query: 582  LQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            L ++   L + +G+++D   +PFDD  TY L++   T G+FQLE +G+  A   ++P  +
Sbjct: 724  LDEARRILRESKGIEMDFDTVPFDDEATYELMSRGDTKGVFQLEGAGITDASRRLRPRRL 783

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-----SIHPLIDPMLKETQGVIIYQEQV 695
             DIIAL +LYRPGP++NI  Y  R +G E++      +    ++P+L+ET G+ +YQEQ+
Sbjct: 784  ADIIALSALYRPGPMENIPTYVRRHHGVEEVTYEDFPNSEKWLEPILRETYGIPVYQEQI 843

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQIA  ++GYSL  AD+LRRAMGKK   EM KQ++ F+ GA  NG+ +  A  +F+LL  
Sbjct: 844  MQIASDVAGYSLGGADLLRRAMGKKDAAEMTKQRQLFVEGAEGNGVPRDEANKLFDLLDA 903

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA+YGFNKSH+AAY VI+YQTAW+K +YPVEF+AA +T+E  + +K+ ++  DAR+ +++
Sbjct: 904  FANYGFNKSHSAAYGVITYQTAWLKANYPVEFMAALLTVERRDSDKVAEYISDARKMDVR 963

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDS 874
            ++PP +N    DF V    IY+ L AIKG+G      I+ E      F+SL +FCSR+D+
Sbjct: 964  VLPPDINRSSSDFAVAGEEIYFGLYAIKGLGEAAVLRILDERERAGHFESLANFCSRIDN 1023

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            K  NR+ LESL+ +GA D FG  R QLL+SLD+  + A    K        I    +   
Sbjct: 1024 KTCNRKALESLIKSGAFDAFG-ERRQLLESLDDALEDAAGTAK--------INQRAQAGM 1074

Query: 935  SDKITLEKFSVE---NSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIK--- 981
            S    L++   E    S V       R   E+  LG Y SGHPL+ ++ +      +   
Sbjct: 1075 SMMFALDEVVEERPLRSGVPPFTELERLAAEKEALGLYISGHPLEQHEGLREAASCRIAD 1134

Query: 982  ---GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                +E      +     LA M+   Q+K T+ G  +     ++ + + E
Sbjct: 1135 LDSWFEVQPKKGKRQKAVLAGMIEGVQKKPTKSGGMMARFILADESGQIE 1184



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 142/294 (48%), Gaps = 16/294 (5%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQP-----AIAITDTNNLFSALEFSQ 60
           EK   F HL  H+ YSLL+GA  L ++L K A +  P     A+A+TD  N+  A+ F  
Sbjct: 27  EKPKRFAHLHQHTQYSLLDGAAKLKDLL-KWAKETSPEGSDAALAMTDHGNMHGAVHFYN 85

Query: 61  KACAAGIQPIIGCQ-LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            A  AG++PI+G +   +      +   +G+     +  + LL    EGYQ L  L SR 
Sbjct: 86  YAQDAGVKPILGYEAYVVPGFGTRRDRTRGQDGEKGIYHLTLLARDFEGYQNLCRLSSRG 145

Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
           Y  +      RI    LQE  ++G+I  +G     + +         A++RLL ++ LFG
Sbjct: 146 YT-EGYYYKPRIDHELLQE-HSKGVIAFSGCLGSEVQQLLLMGRHDEAKERLLWYRDLFG 203

Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELP--LVATNNSLFLSEEDYEAHDVLMAVAHS 237
           +  Y+ +Q H G     ++  +   +  EL   +VATN+  ++ +ED   H+ L+A+   
Sbjct: 204 ENYYIEIQNH-GLKEQDQNNPILRQWAQELGIGMVATNDGHYVKKEDATPHETLLAIQTK 262

Query: 238 TVVSQKDRPRVTPDH-YLKNRSEMVSIF--SDL-PEALENTVEIARRCSFILQV 287
             ++ ++R +   D  Y+K+  EM +    SD   E  +N   IA  C+  L V
Sbjct: 263 ATLADENRFKFPCDEFYVKSLEEMQAALPVSDWGEEVFDNAANIADLCNVELPV 316


>gi|256819216|ref|YP_003140495.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM 7271]
 gi|256580799|gb|ACU91934.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM 7271]
          Length = 1485

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 357/1085 (32%), Positives = 574/1085 (52%), Gaps = 78/1085 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            F HL  H+ +S+L+   S+ +++   A ++ PA+A+TD+ N+ +A  F Q   A      
Sbjct: 255  FAHLHNHTQHSILQSTTSIKDLVKITAKEKMPAVALTDSGNMMAAFHFVQAVQAHNKEAE 314

Query: 67   -----------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                             I+PIIGC+ +I  +++L  + Q          +V+L    +GY
Sbjct: 315  AKNKEAEEKGETPTETLIKPIIGCEFNI-CENHLDRSRQDNGY-----QVVILAKNKQGY 368

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L ++ S      +G   V      + E     LI+L+GG +G +        ++ AE+
Sbjct: 369  HNLTKMAS--IASTKGFYYVPRIDKVIVEQYKSDLIVLSGGMNGEVPSKILNIGTKQAEE 426

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             LL +K+ FG+  Y+ + RH   D  R ++ +V+ +  + + L+ATNN+ +L ++D  AH
Sbjct: 427  ALLWWKEQFGEDFYLEVMRHNQEDENRVNETLVEFSKKYGVKLIATNNTFYLHKKDANAH 486

Query: 229  DVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            D+L+ V       T + +    R      ++Y K  +EM ++F D+PEA+ N  EI  + 
Sbjct: 487  DILLCVKDGEKQKTPIGRGRGYRFGMPNNEYYFKTSAEMKALFKDIPEAILNIQEIIDKV 546

Query: 282  SFILQVHAPILPRF-----IEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQ 335
                     +LP+F      + E D   K+ EN  LR+    G + +  +          
Sbjct: 547  EPYGLARDILLPKFDIPEEFQVEEDPTGKKGENNYLRHLTYEGAKRKYPE-------ITD 599

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            + R+RLDFEL++I +  + GYFLIV DFI  A++ N+ VGPGRGS AGS  A+ L IT++
Sbjct: 600  EVRERLDFELSIIEKTGYPGYFLIVQDFIAAARRMNVSVGPGRGSAAGSAVAFCLDITNM 659

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DP+++ LLFERFLNPDR+SMPD DIDF    R +VI YV +KYG  +VA+IIT+G + AK
Sbjct: 660  DPIKYDLLFERFLNPDRVSMPDIDIDFEDSGRQDVINYVIDKYGESQVARIITYGKMAAK 719

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD-PSVDRL--- 511
            +A++D  R L +P  + +RL  L+PN  +    +    D +   + R  + P VD L   
Sbjct: 720  SAIKDTARVLDVPLQESNRLAGLVPNGVSSLGKMFGWDDKTLKEKVRSEELPKVDELKRL 779

Query: 512  ------------LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
                        ++ +  +EG  R+   HA G++I    ++  VP+     SDL VTQF+
Sbjct: 780  LAGEGEEESTQTIQQANIIEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDLFVTQFD 839

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTL 618
               +E AGL+K DFLGL TLTL++ +++ + Q   +++D    P DD +TY L     T+
Sbjct: 840  NSVVESAGLLKMDFLGLSTLTLIKDTIENIKQTHNIELDAEAFPLDDKKTYELFQRGETV 899

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            GIFQ ES+GM++ +  ++P    D+IA+ +LYRPGP++ I  +  RK+G E I    P +
Sbjct: 900  GIFQYESTGMQKYMRELKPTVFADLIAMNALYRPGPLEYIPSFIKRKHGIESIEYDLPDM 959

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  LKET G+ +YQEQVM ++Q L+G++  EADVLR+AMGKK    + K K +FI+ AS+
Sbjct: 960  EEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQIAVLAKMKPKFITQASE 1019

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             G        I+    KFA Y FNKSH+  YA + YQTA++K +YP E++AA ++  M++
Sbjct: 1020 KGHDAQKLEKIWADWEKFAAYAFNKSHSTCYAWVGYQTAYLKANYPAEYMAAVLSNNMND 1079

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEAS 857
            ++ I  F ++  +  ++++PP VN     F V  N  I + + A+KGVG      I+E  
Sbjct: 1080 IKTITFFLEECHRMGVKVLPPDVNESLYKFTVNKNGDIRFGMGAVKGVGKAAVDTIVEQR 1139

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQ 909
             ++P+ S+ D   RVD K +N++  ES+  AG  D F    R Q   +       L+   
Sbjct: 1140 QERPYTSIFDLAKRVDYKSINKKAFESIALAGGFDSFTNVHRAQYFHAEADGIPFLEKAI 1199

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++    ++++ +   ++F  E      +  + K     +  +   E+ V+G Y SGHPLD
Sbjct: 1200 RFGTKYQESKNSAQMSLFGGESEVDIPEPAVPKCETWGNLEQLRREKEVVGIYISGHPLD 1259

Query: 970  VYKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             +K  L+        E   +       + +A MV   Q +  + G   G+ T  +    Y
Sbjct: 1260 DFKHELQNFCNISLSELQDLQPFINRELTVAGMVADLQHRTAKNGKGYGFFTLEDYDGSY 1319

Query: 1028 EANFF 1032
            E   F
Sbjct: 1320 EFKLF 1324


>gi|154509031|ref|ZP_02044673.1| hypothetical protein ACTODO_01548 [Actinomyces odontolyticus ATCC
            17982]
 gi|153798665|gb|EDN81085.1| hypothetical protein ACTODO_01548 [Actinomyces odontolyticus ATCC
            17982]
          Length = 1180

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 373/1076 (34%), Positives = 578/1076 (53%), Gaps = 74/1076 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  HS YS+L+GA     + ++ A   QPAI +TD   LF A +F      AG++P
Sbjct: 4    SFVHLHNHSEYSMLDGAAKTKAMAEEAARLGQPAIGLTDHGYLFGAFDFYTNCKNAGVKP 63

Query: 70   IIGCQLDI-------DMQDNLKMTNQGK----TPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            IIG +  +       D Q  L      +    +   +   + L+     G   L  L S 
Sbjct: 64   IIGLEAYVTPGTSRFDRQKVLWGEPWQRADDVSAGGSYNHLTLVAYNTTGMHNLFRLGSY 123

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
                 Q  +  R     L +   EGLI+ TG  SG +           A       + +F
Sbjct: 124  ASTDGQFGKWPRADKELLSQF-HEGLIVFTGCPSGAVQTRLRLGQWDEAVAEAAELRDIF 182

Query: 179  G-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            G +  YV +  H G D  R    QV+++A     PLVATN++ ++  ED +  D L+ + 
Sbjct: 183  GAENFYVEVMDH-GIDIERRTHQQVLEIAKLMNAPLVATNDAHYVKREDRKIQDALLCIN 241

Query: 236  HSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSF---ILQVHAPI 291
              + ++  DR +   D +Y+++  EM +++S+LP A ++T+EIA RC       +  A  
Sbjct: 242  SGSRINDPDRFKFDGDGYYIRSSDEMRALWSELPGACDSTLEIAERCDVHFTTTKEGANY 301

Query: 292  LPRFIEKECDD----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
            +P F   E +D      KE E  LR++   G+                D R++  +E +V
Sbjct: 302  MPDFPVPEGEDKTSWFIKEVERGLRDRFPNGI--------------PDDVRKQAQYEEDV 347

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I +M F GYFL VAD+I WAK   I VGPGRGSGAGS+ AYAL IT+++PL   L+FERF
Sbjct: 348  IIKMGFPGYFLTVADYINWAKSQGIRVGPGRGSGAGSMVAYALKITELNPLEHGLIFERF 407

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPDFD+DF + RRDEVI YV+ KYG +R++Q++T+G+++ K AL+D  R L  
Sbjct: 408  LNPERISMPDFDVDFDERRRDEVIAYVKRKYGEDRISQVVTYGTIKTKQALKDSARILGK 467

Query: 468  PYSQVDRLCKLIPNDPA---HPVSLQAIADD--------SRFREARLADPSVDRLLEISQ 516
             +   ++L K +P  PA     +++  I D+        S FR+    +P    +++ + 
Sbjct: 468  DFKVGEQLTKALP--PAIMGKDITVHGIFDEKDKRYAEASEFRKFYEENPDTHEVVQYAL 525

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             LEGL R    HA  +++    L+ ++P+ +  +    +TQF+    E  GL+K DFLGL
Sbjct: 526  GLEGLTRQWGVHACAVIMSSHTLTDIIPIMKRPQDGAIITQFDYPTCETLGLLKMDFLGL 585

Query: 577  KTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            + LT++  +L+ +A  G    DL  + FDD +TY LL    TLG+FQL+  GMR  L+ M
Sbjct: 586  RNLTVVSDALENIALNGKPDPDLDHLTFDDKKTYELLGRGDTLGVFQLDGGGMRDLLKLM 645

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVI 689
            +PD  EDI A+ +LYRPGP+  ++   Y  RKNG+++I  IHP L +P+   L  T G+I
Sbjct: 646  KPDNFEDISAVGALYRPGPMGANSHTNYALRKNGRQEITPIHPELAEPLEDILGTTFGLI 705

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQIAQ L+GYSL +AD+LR+AMGKK KE +D+Q + F  G   NG S+     +
Sbjct: 706  VYQEQVMQIAQKLAGYSLGQADILRKAMGKKKKEVLDQQFKGFRQGMVANGYSEESIKAL 765

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++++  F+ Y FNK+H+AAY ++SY TA++K ++P E++AA +T   DN ++   +  + 
Sbjct: 766  WDVVVPFSAYAFNKAHSAAYGLVSYWTAFLKANFPTEYMAALLTSTKDNKDRRALYLAEC 825

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDF 868
            R  +I ++PP VN    +F      I + L AI+ VG      I+E  A+K  F S +DF
Sbjct: 826  RHMDITVLPPDVNASMGNFAPDGEAIRFGLNAIQNVGGPVVDAIVETRAEKGRFASFQDF 885

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF- 927
              +V     N+R ++SL+ AGA D  G++R  LL   D        V++N      ++F 
Sbjct: 886  LDKVPQVVCNKRTIQSLIRAGAFDSMGHTRRALLARCDEAVDAIIDVKRNEAIGQFDLFG 945

Query: 928  --AHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                ++ T S   I +      +   +   E+ +LG Y S HPL   +  L +   + YE
Sbjct: 946  ALGEDEDTGSGLTIDIPDLPEFDRKTKLAAEREMLGLYVSDHPLRGVEAALARH--QDYE 1003

Query: 985  ESVATIRGNN-------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +A + G++       +++A ++     K T++G+     T  + +   +  FFP
Sbjct: 1004 --IAQVVGSDGAMADRIVKIAGLISGVTTKVTKQGNAWAIATIEDLSGSVDVLFFP 1057


>gi|224541515|ref|ZP_03682054.1| hypothetical protein CATMIT_00685 [Catenibacterium mitsuokai DSM
            15897]
 gi|224525552|gb|EEF94657.1| hypothetical protein CATMIT_00685 [Catenibacterium mitsuokai DSM
            15897]
          Length = 1030

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 354/1026 (34%), Positives = 566/1026 (55%), Gaps = 77/1026 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HLQ+ S+YS  E  L +N ++D   +    A+A+TD NN++ A EF +    A I+PI
Sbjct: 11   FGHLQIKSAYSFQESTLLINALIDNAKSKHIQALALTDDNNMYGAYEFYEACKKASIKPI 70

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G    I   D+L               + L      GY+ L+ +VS + L +    +++
Sbjct: 71   LGVNASIMFNDDL-------------IHLALYARDDVGYKDLVRIVSDINLNENKAITLK 117

Query: 131  ICLSWLQEIGT-----EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF----KKLFGD- 180
               ++   +       E  ++    +S    +      +Q+ E  +L+F    KKLFG  
Sbjct: 118  ALSNYRDHLYVVSHEYEDRLIEKEATS----KEDLLTHAQI-ESPVLSFMKTMKKLFGAS 172

Query: 181  -RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             R+ +     +G+   R   +++ A   ++P +  N+  +L   D    D+L A     V
Sbjct: 173  YRIMIVEDGLKGHT-LRNQTLIKYAQFLDIPCIWGNDVRYLHPHDAFTLDLLQASKKGEV 231

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +S KD   +T + YLK   E+  +FS  P+ ++NT E+   C   +Q     LPR+    
Sbjct: 232  LS-KDYEPLTSERYLKTEKEIRELFSRYPDIIKNTEEMIDNCYGSIQKTKNGLPRYQTPH 290

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             D         LR+  + GL+ R     I       DY+ RL +EL  I  M +  YFLI
Sbjct: 291  GD-----SGAYLRHLCIKGLKQRFKNQTIT-----DDYKDRLLYELKTIHTMGYDDYFLI 340

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D++Q+AKK+ I VGPGRGS AGS+ AY L IT+IDPL++ LLFERFLNP+R+SMPD D
Sbjct: 341  VFDYVQYAKKHGILVGPGRGSAAGSLVAYCLGITNIDPLKYDLLFERFLNPERVSMPDID 400

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  DRRDEVI+YV NKYGH+ VAQI+ F +   + A++D+G+ + +P  +++ + K++
Sbjct: 401  VDFQDDRRDEVIQYVCNKYGHDHVAQIVAFSTYGPRVAIKDLGKVMGIPLPRLEMIAKMV 460

Query: 480  PNDPAHPVSLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P H  S+  +   S  F++    DP + RL+     +E L R+ + HAAG+V+   P
Sbjct: 461  PTAPKHRKSITEVYSTSASFQDMIQKDPVLSRLIAPMSLVEYLPRNITMHAAGVVLSYEP 520

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVD 597
            L  +VP+     SD+ ++Q++  +IEK GL+K DFLGLK LT++   +  + +R G    
Sbjct: 521  LRDVVPLVIG-PSDMIMSQYSKDYIEKTGLLKMDFLGLKNLTMIDYIMKDIERRLGQTFS 579

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP +D  TYHL+    T G+FQLES+GMR  L  M+PD  +DI+A V+LYRPGP++N
Sbjct: 580  INSIPLNDARTYHLIARGDTTGVFQLESNGMRSLLMKMKPDHFDDIVAAVALYRPGPMEN 639

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I +Y   +  K  I  +   ++P+LK T G++IYQEQ+MQIAQ+++G+SL  AD+LR+A+
Sbjct: 640  IPLYLEGRKNKNNITYLVKELEPILKSTYGIMIYQEQIMQIAQVIAGFSLGRADILRKAV 699

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             KK +  M   KE F+ GA K G  + IA+ +++++ KFA+YGFNKSH+ AY  ++YQ A
Sbjct: 700  SKKDESMMASMKEEFLQGAIKKGFDEKIALKLYQMIEKFANYGFNKSHSVAYGYMAYQLA 759

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YP+ F AA ++ E  +     +  ++++++ ++I+PPS+N     F V +  I Y
Sbjct: 760  YLKANYPLYFFAAILSNESGSASSKMRIIEESKRYGVKILPPSINYSYSRFVVEEGGIRY 819

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            SL +IK VG    + I++      F  + DF +R+ S  L+ ++LESL+ AGA D F  +
Sbjct: 820  SLVSIKNVGAAGYKMILKEREKGLFKDMYDFLARIPS--LSSKMLESLIDAGAFDEFNKN 877

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  L +++  + +Y Q            +   EK  F +         EN   R E E+ 
Sbjct: 878  RAYLRKNISLMLEYIQ------------LGVDEKPIFEE-------VRENKYERLERERE 918

Query: 958  VLGFYFSGHPL-----DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            VLG Y S HP+      +  P++  + ++ Y +        NI +   + S +    +KG
Sbjct: 919  VLGLYVSTHPIVYVKQKIKHPLVNFVDVENYMD-------RNILVVCSISSVRAIVDKKG 971

Query: 1013 SRIGWV 1018
              + ++
Sbjct: 972  REMAFI 977


>gi|293376148|ref|ZP_06622394.1| putative DNA polymerase III DnaE [Turicibacter sanguinis PC909]
 gi|292645221|gb|EFF63285.1| putative DNA polymerase III DnaE [Turicibacter sanguinis PC909]
          Length = 1010

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 344/1022 (33%), Positives = 585/1022 (57%), Gaps = 72/1022 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQV S+YSLL  ++ +  ++D    +Q   +A+ +   + SA++F        ++P
Sbjct: 2    SFVHLQVRSAYSLLSSSIKIKELVDLALENQMSCLALVEEGTMHSAIKFYNACRRVNVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG  +++          QG +    +   V+L     GYQ L+++ S +    +G    
Sbjct: 62   LIGMSVNV----------QGDS---FIDEWVILARNQCGYQGLLKIASFI-AKQEGVVLY 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD---RLYVNL 186
               L ++Q+     L+++T G  G +         +  E+RLL + + +      LY+ L
Sbjct: 108  EQVLPFVQD-----LVVITSGEHGMLCSGI----EEYKEERLLQYYESYLKSIPHLYIGL 158

Query: 187  QR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             R   R Y+  +   ++  A     P+VA N+  +L +ED +   +L A+  +  V  ++
Sbjct: 159  MRVNQRTYELSK--HLISFASNVNRPIVALNDVRYLKKEDAKTLTLLQAIKQNQSV--EE 214

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             P V  + Y K+  +M  +F+D+P AL  T +IA  C   + +H  +LP++   E     
Sbjct: 215  LPLVDYERYFKSECQMKELFADVPNALMQTEQIANDCEVEIPLHQSLLPKYQTPEG---- 270

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               ++ L      GLE R         Y   +Y  RL +EL+VI +M FS YFLIV DF+
Sbjct: 271  VSSDSYLEALCFKGLEKR---------YGHLEYANRLKYELSVIHKMGFSDYFLIVWDFV 321

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++AK ++I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF  
Sbjct: 322  RYAKSHDIYVGPGRGSAAGSLVAYVLGITNVDPIKYELLFERFLNPERITMPDIDIDFQD 381

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDEVI+YVQNKYG   V QI TFG+ Q+++A RD+ R  Q+  + ++++   I +   
Sbjct: 382  NRRDEVIQYVQNKYGSHCVVQIATFGTFQSRSAWRDLARVHQVETTLINKVASFIYSGS- 440

Query: 485  HPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +L+ I + ++  R+     P ++ + + ++K+EGL RH S HAAG++I D  L+   
Sbjct: 441  ---TLKEIYEQTKGLRDFFSTYPKLEAIYKEAEKIEGLPRHTSIHAAGVIISDHDLTDYT 497

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
             +     + + V+Q+  + +E  GL+K DFLGLK L +LQ+    + +    + D++ IP
Sbjct: 498  AIMEG-PTGIYVSQYEAEDLEMIGLLKMDFLGLKNLNMLQQITTLIKSSVAPEFDINKIP 556

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +DD +TY +++   T G+FQLES GMRQ L  ++P+C+EDIIA  +L+RPGP++ I ++ 
Sbjct: 557  YDDLKTYEMISQGQTTGVFQLESEGMRQVLRAVRPNCLEDIIACNALFRPGPMEGIPLFA 616

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+ ++ I   HP +  +L +T G+I+YQEQ+MQIA ++SGYSL EADVLRRA+ KK K
Sbjct: 617  ARKHHEQPIEYYHPSLQYILSKTYGIIVYQEQIMQIANVVSGYSLGEADVLRRAVSKKKK 676

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E ++++++ F+  A + G  + IA  ++EL+ KFA+YGFN+SHA AY++I+YQ A++K H
Sbjct: 677  EILEREQKTFVEKAIERGYHQEIATQLYELILKFANYGFNRSHAVAYSMIAYQMAYLKRH 736

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP  F+  +++  + +     ++ ++A+Q +I ++PPS+N+  + +++ +  I +SL  I
Sbjct: 737  YPSYFMTVALSNVIGSESNTAQYVKEAKQLDILVLPPSINSSGLMYQIENENIRFSLLPI 796

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            K +G   AR I+       + S  DF SR  S  LN+R  E L+  GA+D FGY+R  L 
Sbjct: 797  KHIGMNLARQIVAERERGLYKSFYDFVSRTRS-FLNQRAYEGLIDVGAMDEFGYNRTTLH 855

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLG 960
             +L  I  ++++               + G F    +I + K ++ +S+ + + E+ +LG
Sbjct: 856  HNLTAILDFSKY---------------DGGLFETDFEIMMMKETL-SSAEKMKREKELLG 899

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY + HP+ + +   ++ G   +   +  +  + I     V   ++ + +KG  + ++  
Sbjct: 900  FYLNSHPIHLMRDQAKEKGWY-FPSDLIHLNVSTITCVGFVEKFREIRDKKGKLMAFMDI 958

Query: 1021 SE 1022
            S+
Sbjct: 959  SD 960


>gi|315224650|ref|ZP_07866473.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga
            ochracea F0287]
 gi|314945278|gb|EFS97304.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga
            ochracea F0287]
          Length = 1485

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 357/1085 (32%), Positives = 575/1085 (52%), Gaps = 78/1085 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------------ 58
            F HL  H+ +S+L+   S+ +++   A ++ PA+A+TD+ N+ +A  F            
Sbjct: 255  FGHLHNHTQHSILQSTTSIKDLVKITAKEKMPAVALTDSGNMMAAFHFVQAVQGHNKEAE 314

Query: 59   ---------SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                     S+      I+PIIGC+ +I  +++L  + Q          +V+L    +GY
Sbjct: 315  AKNKEAEEKSETPTETLIKPIIGCEFNI-CENHLDRSRQDNGY-----QVVILAKNKQGY 368

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L ++ S      +G   V      + E     LI+L+GG +G +        ++ A++
Sbjct: 369  HNLTKMAS--IASTKGFYYVSRIDKAIVEQYKSDLIVLSGGMNGEVPSKILNIGTKQAKE 426

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             LL +K+ FG+  Y+ + RH   D  R ++ +V+ +  + + L+ATNN+ +L ++D  AH
Sbjct: 427  ALLWWKEQFGEDFYLEVMRHNQEDENRVNETLVEFSRKYGVKLIATNNTFYLHKKDANAH 486

Query: 229  DVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            D+L+ V       T + +    R      ++Y K  +EM ++F D+PEA+ N  EI  + 
Sbjct: 487  DILLCVKDGEKQKTPIGRGRGYRFGMPNNEYYFKTTAEMKTLFKDIPEAILNIQEIIDKV 546

Query: 282  SFILQVHAPILPRF-----IEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQ 335
                     +LP+F      + E D   K+ EN  LR+    G + +  +          
Sbjct: 547  EPYGLARDILLPKFDIPEEFQVEEDPTGKKGENNYLRHLTYEGAKRKYPE-------ITD 599

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            + R+RLDFEL++I +  + GYFLIV DFI  A++ N+ VGPGRGS AGS  A+ L IT++
Sbjct: 600  EVRERLDFELSIIEKTGYPGYFLIVQDFIAAARRMNVSVGPGRGSAAGSAVAFCLDITNM 659

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DP+++ LLFERFLNPDR+SMPD DIDF    R +VI YV +KYG  +VA+IIT+G + AK
Sbjct: 660  DPIKYDLLFERFLNPDRVSMPDIDIDFEDSGRQDVINYVIDKYGESQVARIITYGKMAAK 719

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD-PSVDRL--- 511
            +A++D  R L +P  + +RL  L+PN  +    + +  D +   + R  + P VD L   
Sbjct: 720  SAIKDTARVLDVPLQESNRLASLVPNGVSSLGKMFSWDDKTLKEKVRSEELPKVDELKRL 779

Query: 512  ------------LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
                        ++ +  +EG  R+   HA G++I    ++  VP+     SDL VTQF+
Sbjct: 780  LAGEGEEDSTQTIQQANIIEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDLFVTQFD 839

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTL 618
               +E AGL+K DFLGL TLTL++ +++ + Q   +++D    P DD +TY L     T+
Sbjct: 840  NSVVESAGLLKMDFLGLSTLTLIKDTIENIKQTHNIELDAEAFPLDDKKTYELFQRGETV 899

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            GIFQ ES+GM++ +  ++P    D+IA+ +LYRPGP++ I  +  RK+G E I    P +
Sbjct: 900  GIFQYESTGMQKYMRELKPTVFADLIAMNALYRPGPLEYIPSFIKRKHGIEPIEYDLPDM 959

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  LKET G+ +YQEQVM ++Q L+G++  EADVLR+AMGKK    + K K +FIS AS+
Sbjct: 960  EEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQIAVLAKMKPKFISQASE 1019

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             G        I+    KFA Y FNKSH+  YA + YQTA++K +YP E++AA ++  M++
Sbjct: 1020 RGHDTQKLEKIWTDWEKFAAYAFNKSHSTCYAWVGYQTAYLKANYPAEYMAAVLSNNMND 1079

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEAS 857
            ++ I  F ++  +  I+++PP VN     F V  N  I + + A+KGVG      I+E  
Sbjct: 1080 IKTITFFLEECHRMGIKVLPPDVNESLYKFTVNKNGDIRFGMGAVKGVGKAAVDTIVEQR 1139

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQ 909
             ++P+ S+ D   RVD K +N++  ES+  AG  D F    R Q   +       L+   
Sbjct: 1140 QERPYTSIFDLAKRVDYKSINKKAFESIALAGGFDSFTNVHRAQYFHAEADGVPFLEKAI 1199

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++    ++++ +   ++F  E      +  + K     +  +   E+ V+G Y SGHPLD
Sbjct: 1200 RFGTKYQESKNSAQMSLFGGESEVDIPEPAVPKCETWGNLEQLRREKEVVGIYISGHPLD 1259

Query: 970  VYKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             +K  L+        E   +       + +A MV   Q +  + G   G+ T  +    Y
Sbjct: 1260 DFKHELQNFCNISLSELQDLQPFINRELTVAGMVADLQHRTAKNGKGYGFFTLEDYDGSY 1319

Query: 1028 EANFF 1032
            E   F
Sbjct: 1320 EFKLF 1324


>gi|325954953|ref|YP_004238613.1| DNA polymerase III subunit alpha [Weeksella virosa DSM 16922]
 gi|323437571|gb|ADX68035.1| DNA polymerase III, alpha subunit [Weeksella virosa DSM 16922]
          Length = 1463

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 366/1091 (33%), Positives = 582/1091 (53%), Gaps = 80/1091 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------ 58
             E +P F HL  H+ +S+L+  +++ +++   A    PA+AITD  N+  A  F      
Sbjct: 256  FENAP-FSHLHNHTQFSILQSTITIKDLVKATAKQNMPAVAITDHGNMMGAFHFVDAVYE 314

Query: 59   --------SQKACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
                    +++  A G       I+PI+G +  +  +++L  T +          IV L 
Sbjct: 315  HNQQVEEKNKELEAQGLGPTEKTIKPIVGVEFFV-CENHLDKTKKDNGY-----QIVFLA 368

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
                GY  L ++ S+  + D      RI    +++   EGLI+L+G   G I        
Sbjct: 369  KNKVGYHNLAKMASKGNI-DGFYYVPRIDREVIRQ-HKEGLIVLSGNLQGEIPNKILNIG 426

Query: 164  SQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSE 222
             + AE+ L  +K+ FGD  Y+ L RH   D  R +Q ++Q A  H + L+ATNN+ ++ +
Sbjct: 427  ERQAEEALEWWKEEFGDDFYIELMRHGQEDEDRVNQTLIQFAMKHNVKLIATNNTYYIDK 486

Query: 223  EDYEAHDVLMAV-----AHSTVVSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEALENTV 275
            ED  AHD+L+ V       + +   +      P  ++Y K+  EM ++F D+P A+ N  
Sbjct: 487  EDSNAHDILLCVRDAEKQSTPIGRGRGFRFGFPNQEYYFKSSEEMKNLFRDIPHAIINIQ 546

Query: 276  EIARRCSFILQVHAPILPRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
            EI  +          +LP+F I +E    + E++   R +  A L     +GA  + Y  
Sbjct: 547  EIVDKVEEYKLRRDVLLPKFTIPEEFIHAEDEQDGGKRGEN-AYLRFLTYEGA-KRRYET 604

Query: 335  --QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
               +  +RLDFEL  I R  + GYFLIV DFI  A++  + VGPGRGS AGS  AY L I
Sbjct: 605  ITSEIEERLDFELTTIERTGYPGYFLIVQDFIAAAREMGVSVGPGRGSAAGSAVAYCLGI 664

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T++DP+ + LLFERFLNPDR+SMPD DIDF  + R  V+ YV NKYG  +VAQIIT+G++
Sbjct: 665  TNLDPIEYDLLFERFLNPDRVSMPDIDIDFDDEGRSLVMDYVINKYGANQVAQIITYGTM 724

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPN---------------DPAHPVSLQAIADDSR 497
             AK+++RD  R L +P  + D++ KLIPN               +   P  L+ + +  R
Sbjct: 725  AAKSSIRDTARVLDLPLYEADKIAKLIPNMKLSKIFQLDEKVLRNELRPEDLENVLELKR 784

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
              +    +    + ++ +Q LEG  R+   HA G++I    ++  VP+     SDL +TQ
Sbjct: 785  LSDG---NDLTAQTIQQAQILEGSVRNTGVHACGVIITPDDITNFVPVTTAKDSDLYLTQ 841

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKG 616
            F+    E AGL+K DFLGLKTLTL++ ++  +  R  + +D   IP DD++TY L     
Sbjct: 842  FDNSVAEFAGLLKMDFLGLKTLTLIKDTIKLVKLRHDIDIDPDQIPIDDNKTYELFQRGE 901

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            T+GIFQ ES GM++ +  ++P    D+IA+ +LYRPGP++ I  +  RK G E+I     
Sbjct: 902  TIGIFQYESPGMQKHMRDLKPTVFADLIAMNALYRPGPMEYIPSFIRRKAGIEEITYDLD 961

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
              +  L ET G+ +YQEQVM ++Q L+ +S  +ADVLR+AMGKK K  +DK K +FI  A
Sbjct: 962  ACEEYLSETYGITVYQEQVMLLSQKLADFSKGDADVLRKAMGKKQKAVLDKMKPKFIEQA 1021

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
            +  G    I   I+     FA Y FNKSH+  YA I+YQTA++K HYP E++AA ++  M
Sbjct: 1022 AAKGHDPKILEKIWTDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNM 1081

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIM- 854
            ++++++  F ++ ++  I+++ P VN     F V +N  I + + A+KGVG+   + I+ 
Sbjct: 1082 NDIKQVTFFMEECKRMGIKVLNPDVNESISKFNVNENNAIRFGMEAVKGVGSAAVKAIIA 1141

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL------QSLDNI 908
            E   +  F S+ DF  RVD + +N++ +E+L+ AGA D FG+ R +         +L+ I
Sbjct: 1142 EREKNGDFSSIFDFVKRVDLRVVNKKTIENLILAGAFDQFGFHRGRYFYQEDGTTNLEKI 1201

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKI----TLEKFSVENSSVRFENEQRVLGFYFS 964
             KY    +  + +   ++F    GT  D +      +K+S+     +   E+ V+G + S
Sbjct: 1202 IKYGGNYQAQKNSAQTSLFGGLDGTVEDIVPQLPDCDKWSIVQELYK---EKEVIGMFIS 1258

Query: 965  GHPLDVYK---PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             HPLD YK    ++  M +         + G  + +  ++ +   + ++ G   G  TFS
Sbjct: 1259 SHPLDEYKDEIKLISNMTLGQLIGREGEVSGRELSMCGIMSNVMHRISKNGKEYGSFTFS 1318

Query: 1022 EPAKEYEANFF 1032
            + +  Y+   F
Sbjct: 1319 DYSDSYDFMIF 1329


>gi|213609772|ref|ZP_03369598.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 603

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 296/602 (49%), Positives = 411/602 (68%), Gaps = 22/602 (3%)

Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
           RPR  +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +    
Sbjct: 8   RPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM--- 64

Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
               E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV
Sbjct: 65  --TTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIV 122

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+
Sbjct: 123 MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 182

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P
Sbjct: 183 DFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 242

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++
Sbjct: 243 PDPGMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 301

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     
Sbjct: 302 DFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPP 361

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
           +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+
Sbjct: 362 LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 421

Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            + +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L 
Sbjct: 422 QSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 481

Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 482 GADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAA 541

Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
           YA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F
Sbjct: 542 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 601

Query: 829 KV 830
            V
Sbjct: 602 HV 603


>gi|295136252|ref|YP_003586928.1| DNA polymerase III subunit alpha-1 [Zunongwangia profunda SM-A87]
 gi|294984267|gb|ADF54732.1| DNA polymerase III subunit alpha-1 [Zunongwangia profunda SM-A87]
          Length = 1462

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 361/1085 (33%), Positives = 573/1085 (52%), Gaps = 91/1085 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------ 58
            L++ P F HL  HS +S+L+  +S+ ++++       PA+A+TD  N+  A  F      
Sbjct: 257  LDEVP-FAHLHNHSQFSVLQSTISIADLVNAAGEQNMPAVALTDHANMMGAFHFVKEVGA 315

Query: 59   ---------------SQKACAAGIQPIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVL 101
                            + A A  ++ IIGC+  +  +  D  +  N  +        +V+
Sbjct: 316  YNKNVQAKNEEAEANGEPAQAKELKAIIGCEFFVCENHTDKSRKDNGYQ--------VVM 367

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
            L    +GY  L ++ S+ Y  D      RI    +++   E +I+LTG   G +      
Sbjct: 368  LAKNKKGYHNLAKMSSKAYT-DGFYYVPRIDKEVVKQY-KEDVIVLTGNLYGEVPSKILN 425

Query: 162  NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFL 220
               + AE+ LL +K+ FGD LY+ + RH   D  R +QV ++ +  H++ L+ATNN+ + 
Sbjct: 426  VGEKQAEEALLWWKEEFGDDLYIEIMRHNQEDENRVNQVLIEFSKKHDIKLIATNNTYYW 485

Query: 221  SEEDYEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALEN 273
             ++D  AHD+L+ V      +T + +    R      ++Y K   EM ++F DLPEA+ N
Sbjct: 486  KKDDANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKTAEEMKNLFKDLPEAISN 545

Query: 274  TVEIARRCSFILQVHAPILPRFI--------EKECDDIQKEEENELRNKAVAGLEVRLAQ 325
              EI  +          +LP F         E + D  ++ E   L++    G E R  +
Sbjct: 546  IKEIVDKIEPFELARDVLLPAFTIPEEFLVEEDKVDGGKRGENAYLKHITYKGAEERYGE 605

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
               A        ++RLDFEL+VI    + GYFLIV DFI+ A+  ++ VGPGRGS AGS 
Sbjct: 606  ITPA-------IKERLDFELSVIENTGYPGYFLIVEDFIREARNLDVSVGPGRGSAAGSA 658

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV  KYG  +VAQ
Sbjct: 659  VAYCLGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIGKYGANQVAQ 718

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV-SLQAIADDSRFREARLA 504
            IIT+G++ AK+++RD  R L +P S  DR+ KLIPN     +  +   A  ++FR   + 
Sbjct: 719  IITYGTMAAKSSIRDTARVLDLPLSDADRIAKLIPNTKLGKIFGMDEKALKAKFRSEEV- 777

Query: 505  DPSVDRLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
              S++ LL I++              LEG  R+   HA G++I    ++  VP+     S
Sbjct: 778  -DSINELLNIAEGDDLEAQTVNQARVLEGSVRNTGIHACGVIITPSDITNYVPVSVAKDS 836

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL--SLIPFDDHETY 609
            DL VTQF+   +E AGL+K DFLGLKTLTL++ ++  +  R   +DL     P DD ETY
Sbjct: 837  DLYVTQFDNSVVESAGLLKMDFLGLKTLTLIKDTIKIVKGRH-NIDLVPDEFPLDDEETY 895

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T+GIFQ ES GM++ ++ ++P   +D+IA+ +LYRPGP++ I  +  RK+G E
Sbjct: 896  KLFQRGETVGIFQYESPGMQKHMQALKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGDE 955

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +I    P ++  LKET G+ +YQEQVM ++Q L+G++  EAD+LR+AMGKK+   + + K
Sbjct: 956  EISYDLPDMEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADMLRKAMGKKLVALLAQLK 1015

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI G    G    +   I++    FA Y FNKSH+  YA I+YQTA++K HYP E++A
Sbjct: 1016 PKFIGGGEAKGHPTEVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMA 1075

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTT 848
            A ++  M++++++  F ++ ++  + ++ P VN     F V  D  + + + AIKGVG  
Sbjct: 1076 AVLSNNMNDIKQVTFFMEECKRMKLNVLGPDVNESYYKFSVNKDYAVRFGMGAIKGVGAG 1135

Query: 849  TARHIMEASADK--PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS-RMQLLQS- 904
                I+E    +  P+ S+ D   R+D +  N++  E+L  AG  DCF  + R Q     
Sbjct: 1136 AVATIVENRKGEAGPYRSIFDMAKRIDLRAANKKAFENLALAGGFDCFKETHRAQYFHDE 1195

Query: 905  ------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
                  L+ + K+A   ++N  +   ++F         + ++       +  +   E+ V
Sbjct: 1196 GDGMSFLEKVVKFAAKFQENENSSQVSLFGEASEVQIPEPSVPPCEEWGTMEKLRREKEV 1255

Query: 959  LGFYFSGHPLDVYKPILRKM--GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            +G Y SGHPLD +K  ++    G      ++  +    I    ++   Q + ++ G   G
Sbjct: 1256 VGIYISGHPLDDFKKEIQYFCNGSLSDFRALEKVVNREISFGGVISDVQHRMSKMGK--G 1313

Query: 1017 WVTFS 1021
            W  F+
Sbjct: 1314 WAMFT 1318


>gi|168994055|gb|ACA41595.1| DNA polymerase III subunit alpha [Lysinibacillus sphaericus C3-41]
          Length = 1020

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 360/1028 (35%), Positives = 557/1028 (54%), Gaps = 60/1028 (5%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75
            +H+S  LL+  + L  ++  +   +  A AI +T  L+  L F +    A I  ++G  +
Sbjct: 1    MHTSADLLKSTIRLEQLIPFLLEQKTQACAIVNTK-LYGLLPFCKAMQQAKIHAVMGLSV 59

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            ++   D             T+P +VL   + EGYQ+L+++ S   + + G     +   W
Sbjct: 60   NVQWHDT------------TLP-LVLYAQSQEGYQQLLKISSAASIREDGV----LPWKW 102

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR-----LLTFKKLFGDRLYVNLQRHR 190
            L+      L +L+              S  +AE +     +     LF    Y+ + R  
Sbjct: 103  LEGYAAGCLALLS--------------SDDLAELKDWHGVVSALAHLFQHHFYMGITRPG 148

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G     E+++V+      +PLVA  +  FL  ED+ A++V  A+     +          
Sbjct: 149  GVALANENELVEWCEGQRIPLVAVQSCYFLRPEDHFAYEVARAIDTGDKLGDTMLTAKLQ 208

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             ++     E  S F+D PE LE   ++   C  I+   +  +P+F       + +  E+ 
Sbjct: 209  GYFAPTAQEWQSWFTDRPEWLETCGQMLASCRAIIPEMSVQMPKF----PVPVGETAESL 264

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L  +A +GLE R  Q  I  GY     R+RL +EL +I  M F+ YFL+VADF+++AK N
Sbjct: 265  LVKEAFSGLEERFNQLDIPYGY-----RERLRYELEIICSMGFADYFLVVADFMRFAKDN 319

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I  GPGRGS AGS+ AY+L IT +DPL + LLFERFLNP+R+S+PD DIDF   +R +V
Sbjct: 320  RILTGPGRGSSAGSLVAYSLAITQVDPLAYGLLFERFLNPERISLPDIDIDFVDSKRHQV 379

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YV  KYG   VAQIITFG+L AKA  RDV R        ++++ K+IPN P   ++LQ
Sbjct: 380  IQYVAQKYGKGNVAQIITFGTLSAKAVARDVARVFGFGAEVLEKISKMIPNKPG--ITLQ 437

Query: 491  -AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A+ +    +E    D    R  E++QKLEGL R++STHAAGIVI    L   VP+  D 
Sbjct: 438  KALEESYDLQEWLSEDHQHQRWFEVAQKLEGLPRNSSTHAAGIVIAPSSLVNTVPI-EDG 496

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK-SLDFLAQRGVKVDLSLIPFDDHET 608
               +  TQ+ M  +E +GL+K DFLGL+ LT+L++         G  +D   IP  D +T
Sbjct: 497  HEGIYCTQWPMGDVEASGLVKMDFLGLRNLTILEQIRWSIYKAGGPWIDFERIPMHDEKT 556

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL +  T GIFQLES GM+QAL  + P    DI+A+ +LYRPGP++ I VY  RK GK
Sbjct: 557  FQLLQSGDTSGIFQLESEGMKQALRDIHPTQFLDIVAVNALYRPGPMEFIPVYARRKAGK 616

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E +V  HP+++P+L+ET GVI+YQEQ+++IA +L+G+S+ +AD+LRRA+ KK ++ +++Q
Sbjct: 617  ELVVMPHPVLEPILQETFGVIVYQEQIIKIASVLAGFSMGQADLLRRAVSKKNRQVLEEQ 676

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  F+ GA K G  + +A  ++EL+ +FADYGF KSHA AY++ISYQ A++K H+P  F 
Sbjct: 677  QVTFVQGALKQGYDQHVATEVYELIVRFADYGFPKSHAVAYSIISYQMAYLKAHFPQSFY 736

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            AA ++    NV+KI++  Q+A+   I   PPS+      F V    I YSLA IKGV  T
Sbjct: 737  AALLSNATGNVDKIQQLVQEAKDKGIPFYPPSLKDSTKYFTVEQEGIRYSLAGIKGVPHT 796

Query: 849  TARHIMEASADKP--FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                I       P    +L D    + ++    +V+ESL++AGALD     R  L+ ++D
Sbjct: 797  FIESINTLRQTNPQALYNLFDLAVALSAQHFKPKVIESLIYAGALDYLEKDRAVLIMTID 856

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
               K+A+ +   R N+  +I    +  F     ++   +     +  +E+  LGFY S H
Sbjct: 857  AALKHAELL---RPNEDIDISTATEFNFGKPKYMQVDDMPQKE-KLIHEKESLGFYISAH 912

Query: 967  PLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            P+   +P    +     E  +  +R G  +++  ++   ++ +T+KG ++ +V   +   
Sbjct: 913  PVTQERPYWADVNCTSRE--LKQMRDGTYVKMIGVMEEVKKIRTKKGEQMAFVQLQDEHG 970

Query: 1026 EYEANFFP 1033
               A  FP
Sbjct: 971  SVSATLFP 978


>gi|320093964|ref|ZP_08025792.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral
            taxon 178 str. F0338]
 gi|319979098|gb|EFW10613.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral
            taxon 178 str. F0338]
          Length = 1179

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 375/1077 (34%), Positives = 574/1077 (53%), Gaps = 73/1077 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL  HS YS+L+GA     +  + A   QPAI +TD   LF A +F     +AG+
Sbjct: 3    SDPFVHLHNHSEYSMLDGAAKTQAMAQEAARLGQPAIGLTDHGYLFGAYDFYTNCVSAGV 62

Query: 68   QPIIGCQLDIDMQ----DNLKMT-------NQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            +PIIG +  +       D  K+T       +   +   +   + L+  + +G   L  L 
Sbjct: 63   KPIIGLEAYVTPGTSRFDRHKVTWGEPWQRSDDVSAGGSYNHLTLIAYSTQGMHNLFRLG 122

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S      Q  +  R     L +   EGLI+ TG  SG +           A       + 
Sbjct: 123  SYASTDGQFGKWPRADKELLAKF-HEGLIVFTGCPSGAVQTRLRLGQWDEAVAEAAELRD 181

Query: 177  LFG-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +FG +  YV +  H G D  R   SQV+++A     PLVATN+S ++ +ED +  D L+ 
Sbjct: 182  IFGPENFYVEVMDH-GIDIERRVHSQVLEIARLMNAPLVATNDSHYVKKEDRKIQDALLC 240

Query: 234  VAHSTVVSQKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSF---ILQVHA 289
            +     ++  DR +   D Y +++  EM  ++ +LP A + T+EIA RC       +  A
Sbjct: 241  INSGARINDPDRFKFDGDGYFIRSSQEMRELWRELPGACDATLEIAERCDVRFTTTKEGA 300

Query: 290  PILPRFIEKECDD----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
              +P F   E +D      KE E  L ++   G+                D R++  +E 
Sbjct: 301  NYMPDFPVPEGEDKTSWFVKEVERGLNDRFPGGI--------------PDDVREQAQYEE 346

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +VI  M F GYFL VAD+I WAK   I VGPGRGSGAGS+ AYA+ IT+++PL   L+FE
Sbjct: 347  DVIISMGFPGYFLTVADYINWAKSQGIRVGPGRGSGAGSMVAYAMKITELNPLEHGLIFE 406

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+SMPDFD+DF + RRDEVI YV+ KYG +R++Q++T+G+++ K AL+D  R L
Sbjct: 407  RFLNPERISMPDFDVDFDERRRDEVIAYVKRKYGEDRISQVVTYGTIKTKQALKDSARIL 466

Query: 466  QMPYSQVDRLCKLIPNDPA---HPVSLQAIAD--DSRFREAR------LADPSVDRLLEI 514
               +   ++L K +P  PA     +S+  I D  D R+ EA         +P    +++ 
Sbjct: 467  GKDFKMGEQLTKALP--PAIMGKDISVAGIFDQGDKRYGEAAEFRKFYEDNPDTHEVVQY 524

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            +  LEGL R    HA  +++    L+ ++P+ +  +    +TQF+    E  GL+K DFL
Sbjct: 525  ALGLEGLTRQWGVHACAVIMSSHTLTDIIPIMKRPQDGAIITQFDYPTCETLGLLKMDFL 584

Query: 575  GLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT++  +L+ +A  G +  DL  I FDD +TY LL    TLG+FQL+  GMR  L+
Sbjct: 585  GLRNLTVVSDALENIAINGKEDPDLDHIRFDDAKTYELLGRGDTLGVFQLDGGGMRDLLK 644

Query: 634  GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQG 687
             M+PD  EDI A+ +LYRPGP+  ++   Y  RKNG+++I  IHP L +P+   L  T G
Sbjct: 645  LMKPDNFEDISAVGALYRPGPMGANSHTNYALRKNGRQEITPIHPELAEPLEEILGTTFG 704

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQVMQIAQ L+GY+L +AD+LR+AMGKK KE +D+Q + F  G   NG S+    
Sbjct: 705  LIVYQEQVMQIAQKLAGYTLGQADILRKAMGKKKKEVLDQQFKGFRQGMVDNGYSEESIK 764

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             +++++  F+ Y FNK+H+AAY ++SY TA++K +YP E++AA +T   DN ++   +  
Sbjct: 765  ALWDVVVPFSAYAFNKAHSAAYGLVSYWTAFLKANYPTEYMAALLTSTKDNKDRRALYLA 824

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLE 866
            + R  +I ++PP VN    +F      I + L+A++ VG      I+ A  +K  F S +
Sbjct: 825  ECRHMDITVLPPDVNASMGNFAPDGEAIRFGLSAVQNVGGPVVEAIVGAREEKGRFASFQ 884

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF  +V     N+R ++SL+ AGA D  G++R  LL   D        V++N      ++
Sbjct: 885  DFLDKVPQVVCNKRTIQSLIRAGAFDSMGHTRRALLARCDEAVDAVIDVKRNEAIGQFDL 944

Query: 927  FA---HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            F       G  S  I +      +   +   E+ +LG Y S HPL   +  L +   + Y
Sbjct: 945  FGGLDDGAGGSSLAIDIPDLPEFDRKQKLAAEREMLGLYVSDHPLRGLEGALARH--QDY 1002

Query: 984  EESVATIRGNN-------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            E  +A + G+        +++A +V     K T++G+     T  + +   E  FFP
Sbjct: 1003 E--IAQVVGSEGAMADRVVKIAGLVSGVTTKVTKQGNAWAIATIEDLSGSVEVLFFP 1057


>gi|150024446|ref|YP_001295272.1| DNA polymerase III, alpha and epsilon subunits [Flavobacterium
            psychrophilum JIP02/86]
 gi|149770987|emb|CAL42454.1| Probable DNA polymerase III, alpha and epsilon subunits
            [Flavobacterium psychrophilum JIP02/86]
          Length = 1508

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 365/1087 (33%), Positives = 579/1087 (53%), Gaps = 86/1087 (7%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-- 58
            +TQ L  +  F HL  H+ +S+L+  +S+  ++   A ++  A+A+TD  NL  A  F  
Sbjct: 252  ITQNLANA-KFAHLHNHTQFSVLQSTISVAKLVAAAAKNKMSAVAMTDHANLMGAFHFVR 310

Query: 59   -------------------SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
                                ++A    ++PI+GC+  +   DN K  ++    +     +
Sbjct: 311  DVLNQNKTAAKKNATAIENGEEATEVEMKPIVGCEFFV--CDNHKDKSKKDNGY----QV 364

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            V L    +GY  L ++ S  Y   +G   V RI  + +++   E +I+L+G   G I   
Sbjct: 365  VFLAKNKKGYHNLAKMSSIAYT--EGFYYVPRIDRNVIEQY-KEDIIVLSGNLYGEIPSK 421

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNS 217
                    AE+ LL +K  F D  Y+ L RH   D  R +Q ++  A  HE+ L+ATNN+
Sbjct: 422  ILNLGENQAEEALLWWKSKFKDDFYLELMRHNQEDENRVNQTLISFANKHEVKLIATNNT 481

Query: 218  LFLSEEDYEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEA 270
             ++S++D  AHD+L+ V      +T + +    R      ++Y K+  EM  +FSDLP+A
Sbjct: 482  FYISKDDANAHDILLCVKEGEKQATPIGRGRGYRFGLPNQEYYFKSGEEMKQLFSDLPDA 541

Query: 271  LENTVEIARRCSFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVR 322
            + N  EI  +          +LP+F         E + D   + E   L +    G + R
Sbjct: 542  IVNIQEIVDKIEIYSLYRDVLLPKFEIPTEFLVPEDQTDGGVRGENKYLHHLTYQGAKRR 601

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
             A+          +  +R+DFEL  I    + GYFLIV DFI  A+K ++ VGPGRGS A
Sbjct: 602  YAE-------ITPEIEERIDFELLTIQNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAA 654

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GSV AY L IT+IDPL ++LLFERFLNPDR+S+PD DIDF  + R +V+ YV  KYG ++
Sbjct: 655  GSVVAYCLGITNIDPLLYNLLFERFLNPDRVSLPDIDIDFDDEGRSKVMDYVIEKYGKKQ 714

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            VAQIIT+G++ AK+A+RD  R L +P  + D++ KL+P       +L    +D+     +
Sbjct: 715  VAQIITYGTMAAKSAIRDTARVLDLPLFEADKIAKLLPGMLPGKWNLARFMNDTEVEIKK 774

Query: 503  LADPS-VDRLLEI----------------SQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            +  P   DR+ E+                +Q LEG  R+   HA G++I    ++  VP+
Sbjct: 775  VLRPEDFDRMKELILLSKEEDLGGETIQQAQILEGNLRNTGIHACGVIITPSDITNFVPV 834

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
                 SDL VTQF+    E AGL+K DFLGLKTLTL++ ++  +  R G+++D    P D
Sbjct: 835  TTAKDSDLYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIQLDPDTFPID 894

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY L     T+GIFQ ES+GM++ ++ ++P    D+IA+ +LYRPGPI  I  +  R
Sbjct: 895  DVKTYELFQRGETVGIFQYESAGMQKYMKELKPTVFNDLIAMNALYRPGPIAYIPSFIKR 954

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            KNG+E I       + +LK+T G+ +YQEQVM ++Q L+ +S  +ADVLR+AMGKK ++ 
Sbjct: 955  KNGEEPIEYDLEACEELLKDTYGITVYQEQVMLLSQRLADFSKGDADVLRKAMGKKQRDV 1014

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +DK K +F+S A   G ++     I++    FA+Y FNKSH+  YA I+YQTA++K +YP
Sbjct: 1015 LDKMKPKFVSQAVAKGHAEDKLEKIWKDWEAFAEYAFNKSHSTCYAWIAYQTAYLKANYP 1074

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843
             E++AA ++  M +++++  F ++ ++  + ++ P VN     F V D+  + + + A+K
Sbjct: 1075 AEYMAAVLSNNMSDIKQVSFFMEECKRMGLAVLGPDVNESFYKFTVNDDYAVRFGIGAVK 1134

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL 902
            GVG      I+E   D  + S+ D   RVD +  N++ +E+L+ AG  DCF    R Q  
Sbjct: 1135 GVGMGAVNTIVENRKDGSYKSIFDLAKRVDQRAANKKAIENLILAGGFDCFENTHRAQYF 1194

Query: 903  QS-LDNIQKYAQWV------EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +  DN+  Y + +      ++N  +   ++F         +  +      N+  +   E
Sbjct: 1195 HTDGDNLTFYEKAIRFGAKFQENENSSQVSLFGDTSDVQISEPLIPPCEEWNTMEKLAKE 1254

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            + V+G Y SGHPLD YK  ++       E  +++    G N+    +V + Q +  + G 
Sbjct: 1255 KEVVGIYISGHPLDDYKFEMKYFCNNKLESLKNLEQFVGKNLAFGGIVTNVQHRTAKNGK 1314

Query: 1014 RIGWVTF 1020
              GW TF
Sbjct: 1315 --GWATF 1319


>gi|213963506|ref|ZP_03391759.1| putative DNA polymerase III, alpha subunit subfamily [Capnocytophaga
            sputigena Capno]
 gi|213953786|gb|EEB65115.1| putative DNA polymerase III, alpha subunit subfamily [Capnocytophaga
            sputigena Capno]
          Length = 1485

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 363/1086 (33%), Positives = 586/1086 (53%), Gaps = 80/1086 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            F HL  H+ +S+L+   S+ +++   A ++ PA+A+TD+ N+ +A  F Q          
Sbjct: 255  FAHLHNHTQHSILQSTTSIKDLVKVTAKEKMPAVALTDSGNMMAAFHFVQAVQGHNKEAE 314

Query: 61   ----KACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                +A   G       I+PIIGC+ +I  +++L  T Q          +V+L    +GY
Sbjct: 315  AKNKEAEEKGETPTETLIKPIIGCEFNI-CENHLDKTRQDNGY-----QVVILAKNKQGY 368

Query: 110  QRLIELVSRMYLLDQGKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
              L ++ S      +G   V RI  + +++  ++ L++L+GG +G I        ++ AE
Sbjct: 369  HNLTKMAS--IASTKGFYYVPRIDKTIVEQYKSD-LMVLSGGMNGEIPSKILNIGTKQAE 425

Query: 169  KRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEA 227
            + LL +K+ FG+  Y+ + RH   D  R ++ +V+ +  + + L+ATNN+ +L ++D  A
Sbjct: 426  EALLWWKEQFGEDFYLEVMRHNQEDENRVNETLVEFSKKYGVKLIATNNTFYLHKKDANA 485

Query: 228  HDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            HD+L+ V       T + +    R      ++Y K  +EM ++F D+PEA+ N  EI  +
Sbjct: 486  HDILLCVKDGEKQKTPIGRGRGYRFGMPNNEYYFKTSAEMKALFKDIPEAILNIQEIIDK 545

Query: 281  CSFILQVHAPILPRF-IEKE---CDDI--QKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
                      +LP+F I +E    DD+  +K E N LR+    G + +  +         
Sbjct: 546  VEPYGLARDILLPKFDIPEEFQVSDDLTGKKGENNYLRHLTYEGAKRKYPE-------IT 598

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
             + R+RLDFEL++I +  + GYFLIV DFI  A++  + VGPGRGS AGS  A+ L IT+
Sbjct: 599  DEVRERLDFELSIIEKTGYPGYFLIVQDFIAAARRMGVSVGPGRGSAAGSAVAFCLDITN 658

Query: 395  IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
            +DP+++ LLFERFLNPDR+SMPD DIDF    R +VI YV +KYG  +VA+IIT+G + A
Sbjct: 659  MDPIKYDLLFERFLNPDRVSMPDIDIDFEDSGRQDVINYVIDKYGESQVARIITYGKMAA 718

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR----LADPSVDR 510
            K+A++D  R L +P  + +RL  L+PN  +    +    D +   + R    L    + R
Sbjct: 719  KSAIKDTARVLDVPLQESNRLAGLVPNGVSSLGKMFGWDDKTLKEKVRSEELLKVDELKR 778

Query: 511  LL------EISQKL------EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
            LL      E +Q +      EG  R+   HA G++I    ++  VP+     SDL VTQF
Sbjct: 779  LLAGEGEEESTQTIQQANIIEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDLFVTQF 838

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617
            +   +E AGL+K DFLGL TLTL++ +++ + Q   +++D    P DD +TY L     T
Sbjct: 839  DNSVVESAGLLKMDFLGLSTLTLIKDTIENIKQTHNIELDAEAFPLDDKKTYELFQRGET 898

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +GIFQ ES+GM++ +  ++P    D+IA+ +LYRPGP++ I  +  RK+G E I    P 
Sbjct: 899  VGIFQYESTGMQKYMRELKPTVFADLIAMNALYRPGPLEYIPSFIKRKHGIEPIEYDLPD 958

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LKET G+ +YQEQVM ++Q L+G++  EADVLR+AMGKK    + K K +FI+ AS
Sbjct: 959  MEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQIAVLAKMKPKFITQAS 1018

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            + G        I+    KFA Y FNKSH+  YA + YQTA++K +YP E++AA ++  M+
Sbjct: 1019 EKGHDAQKLEKIWADWEKFAAYAFNKSHSTCYAWVGYQTAFLKANYPAEYMAAVLSNNMN 1078

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEA 856
            +++ I  F ++  +  I+++PP VN     F V  N  I + + A+KGVG      I+E 
Sbjct: 1079 DIKTITFFLEECHRMGIKVLPPDVNESLYKFTVNKNGDIRFGMGAVKGVGKAAVDTIVEQ 1138

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNI 908
              ++P+ S+ D   RVD K +N++  ES+  AG  D F    R Q   +       L+  
Sbjct: 1139 RQERPYTSIFDLAKRVDYKSINKKAFESIALAGGFDSFTNVHRAQYFHAEADGIPFLEKA 1198

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             ++    ++++ +   ++F  E      +  + K     +  +   E+ V+G Y SGHPL
Sbjct: 1199 IRFGTKYQESKNSAQMSLFGGESEVDVPEPAVPKCETWGNLEQLRREKEVVGIYISGHPL 1258

Query: 969  DVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            D +K  L           + + +     + +A MV   Q + ++ G   G++T  +    
Sbjct: 1259 DDFKHELHNFCNISLSQLQDLNSFINRELTVAGMVADLQHRTSKNGKGFGFLTLEDYDGS 1318

Query: 1027 YEANFF 1032
            YE   F
Sbjct: 1319 YEFKLF 1324


>gi|193212527|ref|YP_001998480.1| DNA polymerase III subunit alpha [Chlorobaculum parvum NCIB 8327]
 gi|193086004|gb|ACF11280.1| DNA polymerase III, alpha subunit [Chlorobaculum parvum NCIB 8327]
          Length = 1190

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 356/1017 (35%), Positives = 558/1017 (54%), Gaps = 80/1017 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YS+    +    +           +A+TD   +F+  E   +A  A ++ I
Sbjct: 11   FVHLHTHTHYSMQSSPIFPGELFAACKKQGMTTVAVTDYGAMFNMPELFGQAAKAEVKLI 70

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++       L  T+   T  P   +++LL+    GY+ +  ++SR            
Sbjct: 71   MGSEI------YLAGTDAHDTGRPA--TLILLIRNDIGYRNMCVILSRAARDGFSNGLPH 122

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +  S L+E  +EGL  L+   SG I R     +   A K    ++ LFG+  Y+ LQ+H 
Sbjct: 123  VDRSVLKEC-SEGLTCLSAAHSGQIGRTLLAGNEAEAAKLAEQYRSLFGEHFYLELQKHG 181

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              Y+       ++LA    +PLVATNN  +L   D   +  ++A      ++ ++  +  
Sbjct: 182  VPYEELLVPATIRLAEQLGIPLVATNNVHYLDRRDSGCYRAMIANRTKERLNSQNL-QCL 240

Query: 250  PDH--YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P H  Y K+ SEM ++F +  + L NTV+IA  CS+      P LP+F   E  D    E
Sbjct: 241  PGHENYFKSASEMSALFDNSHDELSNTVKIAEACSYKFVDQDPHLPKFPLPEGFD---SE 297

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR+    G   +     +  G   ++ ++R++ EL VI +M +S YFLIV+D I  +
Sbjct: 298  KGYLRHLTWEGARNKYG---VEDGAIPEEVKERIELELGVIEKMGYSAYFLIVSDLIAAS 354

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++    VGPGRGS AGS+ AY   IT IDPL++ LLFERFLNP+R+SMPD DIDF    +
Sbjct: 355  REMGYSVGPGRGSAAGSIIAYLTGITRIDPLKYKLLFERFLNPERISMPDIDIDFTPVGK 414

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +V+ Y   KYG E VA+++  G+L AKAA+RD GR L +P   VD+L KL+P+ P   +
Sbjct: 415  QKVLDYTVQKYGAESVAKVVAIGTLGAKAAIRDAGRVLDVPLKAVDQLAKLVPSKPGTSL 474

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A  +    +    +DP   +L++ ++ +EG  R+ S HA  +VI D  L + VP+Y 
Sbjct: 475  K-DAFKEVKELKRLVDSDPQYQQLMQYARAMEGRARNVSMHAGAVVITDGALEEQVPLYV 533

Query: 548  DVRSDLP--------------------------VTQFNMKWIEKAGLIKFDFLGLKTLTL 581
              + +                            VTQF+   IE+AGL+K D+LGL+TL +
Sbjct: 534  SNKIETEERKYADEFDQNDIDGTKAESSDEKQVVTQFDKNCIEQAGLLKIDYLGLETLAV 593

Query: 582  LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            + ++L  + +R G+ ++L  +P DD +T+ +       GIFQ ESSGM+  +  +QP  I
Sbjct: 594  IDETLRLIKKRHGIDIELEKVPMDDRQTFRIFQEGKMAGIFQFESSGMQSYMTRLQPTTI 653

Query: 641  EDIIALVSLYRPGPIDNIV--------VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
             DIIA+ +LYRPG ++ ++        ++ +RK+G+E+I  +HP+++ +LKET GVI+YQ
Sbjct: 654  GDIIAMSALYRPGALNAVIDEHRNAVDLFVDRKHGREEIDYMHPMLEEILKETYGVIVYQ 713

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQI+Q++  +SL +AD LR+AMGKK    M K KE F+ GA    +++ +A  IF+L
Sbjct: 714  EQVMQISQVMGRFSLGKADNLRKAMGKKNPALMQKFKEEFVQGAVSIDVNEALATRIFDL 773

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A +  E+ + E++K    +A+ F
Sbjct: 774  MAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFVTAILNSEIGDTERMKHLTDEAKGF 833

Query: 813  NIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEASA---DKPFDSL 865
             I  +PPS+N     F V +++    I   L+AIK VG   AR ++ A      KPF +L
Sbjct: 834  GIFTLPPSINQSDALFSVDEHKGKPCIRVGLSAIKQVG-NGARAVVAARLRRDGKPFANL 892

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             D  + VD + +NR+ LE L+ AGALD    +R +LL ++D   K+ Q   K  T     
Sbjct: 893  FDLTASVDLRAMNRKALECLIQAGALDEIDPNRGKLLANVDKAIKFGQIQNKAVT----- 947

Query: 926  IFAHEKGTFSDKITLEKFSV-----ENS-----SVRFENEQRVLGFYFSGHPLDVYK 972
                + G F+D  + E+  +     +N      S + ++E+R++GFY S HPLD Y+
Sbjct: 948  --LGQGGFFNDDFSNEQAGIYYPELDNGEPMPESEKLQHEKRLVGFYLSHHPLDRYR 1002


>gi|301308097|ref|ZP_07214051.1| DNA polymerase III, alpha subunit [Bacteroides sp. 20_3]
 gi|300833567|gb|EFK64183.1| DNA polymerase III, alpha subunit [Bacteroides sp. 20_3]
          Length = 1267

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 370/1124 (32%), Positives = 588/1124 (52%), Gaps = 122/1124 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------- 61
            F+HL VH+ YSLL+G  S++ ++DK   D   AIA+TD   +F   EF  K         
Sbjct: 4    FIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVSKKNSKPL 63

Query: 62   ------------------------------------ACAAGIQPIIGCQLDIDMQDNLKM 85
                                                A A+  +PIIGC+       N + 
Sbjct: 64   GIIKDSEKELKPLLTKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYC--ARNGRH 121

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
            +        +   +++L     GY+ LI++VS  +   +G          L E   + LI
Sbjct: 122  SKLASQDDRSGWHLIVLAKNKNGYKNLIKMVSLSWT--EGFYGRPRIDKELLEKYHKDLI 179

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV----- 200
            + +    G I +         AE+ +  FK LFG+  Y+ +QRH  +D   +  +     
Sbjct: 180  ICSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADCTIFPHQQ 239

Query: 201  ------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                  ++LA+ H + L+ATN+  F++ +D EAHD L+ ++    +    R R +   ++
Sbjct: 240  EVNKVLIELAHKHNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMRYSKQEWM 299

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI------------------ 296
            K  +EM +IF+D+PEAL NT+EIA +  F      PI+P F                   
Sbjct: 300  KTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESYRQKLTEH 359

Query: 297  --------EKECDDIQKEEENELRNKAVAGLE----VRLAQGAIAKGYH----------- 333
                    ++  + +  EEE   + K + G +    ++L    +AK  +           
Sbjct: 360  DLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAKELYGDPL 419

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392
              + ++RL+FEL+++  M F GYFLIV DFI+ A++   + VGPGRGS AGS  AY L I
Sbjct: 420  NDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAVAYCLGI 479

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T IDP+++ LLFERFLNPDR+S+PD D DF  D R EV+R+V  KYG ERVA IIT+G++
Sbjct: 480  TKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHIITYGTM 539

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ---AIADDSRFREARLA-DPSV 508
              K+A++DV R  ++P S+ +RL KL+P+        +   AI      +EA    DP  
Sbjct: 540  ATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVPELKEAANGNDPLA 599

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               L+ +Q LEG  R+   HA G++IG   +S +VP+     +D   ++ VTQ+    IE
Sbjct: 600  RDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQYEGSVIE 659

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
            + GLIK DFLGLKTL++++++++ +    G  +D+  I  +D +TY L     T G FQ 
Sbjct: 660  ETGLIKMDFLGLKTLSIIKEAIENVKLTTGHDLDIDHISLEDPKTYKLYCDGKTTGTFQF 719

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L+ +QP   ED+IA+ +LYRPGP+D I  +  RK GKE+I    P+++  LK
Sbjct: 720  ESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPVMERYLK 779

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+ E+M+  K +F++G   NG  +
Sbjct: 780  DTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGQANGYKE 839

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                 I+    KFA Y FNKSHA  Y+ ++YQTA++K ++P E++AA ++  + N+  I 
Sbjct: 840  ETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANFPSEYMAAVLSRSLSNITDIT 899

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKP 861
            KF  + +   IQ++ P VN   + F V  N+ I + L A+KGVG +  ++I+E    + P
Sbjct: 900  KFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGESAVQNIIEERKKNGP 959

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNIQKYAQW 914
            + S+ DF  RV+    N++ +ES+  AGA D FG  R Q           LD + +Y   
Sbjct: 960  YKSIFDFVERVNLTACNKKNIESMALAGAFDNFGILREQFFTDSGKGELFLDTLVRYGNK 1019

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
             + +++    ++F  +      K  + +    +   R   E+ ++G Y S HPLD Y+ I
Sbjct: 1020 YQMDKSTAVNSLFGGDALIAIAKPEIPQCERWSDLERLNKEKELVGIYLSAHPLDEYRII 1079

Query: 975  LRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            L+ +   G  E     T++G  + L  +V   ++  T+ G   G
Sbjct: 1080 LKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTKNGKPYG 1123


>gi|255012661|ref|ZP_05284787.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_7]
          Length = 1281

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 370/1124 (32%), Positives = 588/1124 (52%), Gaps = 122/1124 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------- 61
            F+HL VH+ YSLL+G  S++ ++DK   D   AIA+TD   +F   EF  K         
Sbjct: 18   FIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVSKKNSKPL 77

Query: 62   ------------------------------------ACAAGIQPIIGCQLDIDMQDNLKM 85
                                                A A+  +PIIGC+       N + 
Sbjct: 78   GIIKDSEKELKPLLAKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYC--ARNGRH 135

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
            +        +   +++L     GY+ LI++VS  +   +G          L E   E LI
Sbjct: 136  SKLASQDDRSGWHLIVLAKNKNGYKNLIKMVSLSWT--EGFYGRPRIDKELLEKYHEDLI 193

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV----- 200
            + +    G I +         AE+ +  FK LFG+  Y+ +QRH  +D   +  +     
Sbjct: 194  ICSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADCTIFPHQQ 253

Query: 201  ------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                  ++LA+ + + L+ATN+  F++ +D EAHD L+ ++    +    R R +   ++
Sbjct: 254  EVNKVLIELAHKYNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMRYSKQEWM 313

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI------------------ 296
            K  +EM +IF+D+PEAL NT+EIA +  F      PI+P F                   
Sbjct: 314  KTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESYRQKLTEH 373

Query: 297  --------EKECDDIQKEEENELRNKAVAGLE----VRLAQGAIAKGYH----------- 333
                    ++  + +  EEE   + K + G +    ++L    +AK  +           
Sbjct: 374  DLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAKELYGDPL 433

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392
              + ++RL+FEL+++  M F GYFLIV DFI+ A++   + VGPGRGS AGS  AY L I
Sbjct: 434  NDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAVAYCLGI 493

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T IDP+++ LLFERFLNPDR+S+PD D DF  D R EV+R+V  KYG ERVA IIT+G++
Sbjct: 494  TKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHIITYGTM 553

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ---AIADDSRFREARLA-DPSV 508
              K+A++DV R  ++P S+ +RL KL+P+        +   AI      +EA    DP  
Sbjct: 554  ATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVPELKEAANGNDPLA 613

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               L+ +Q LEG  R+   HA G++IG   +S +VP+     +D   ++ VTQ+    IE
Sbjct: 614  RDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQYEGSVIE 673

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
            + GLIK DFLGLKTL++++++++ +    G  +D+  I  +D +TY L     T G FQ 
Sbjct: 674  ETGLIKMDFLGLKTLSIIKEAIENVKLTTGHDLDIDHISLEDPKTYKLYCDGKTTGTFQF 733

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L+ +QP   ED+IA+ +LYRPGP+D I  +  RK GKE+I    P+++  LK
Sbjct: 734  ESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPVMERYLK 793

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+ E+M+  K +F++G   NG  +
Sbjct: 794  DTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGQANGYKE 853

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                 I+    KFA Y FNKSHA  Y+ ++YQTA++K ++P E++AA ++  + N+  I 
Sbjct: 854  ETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANFPSEYMAAVLSRSLSNITDIT 913

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKP 861
            KF  + +   IQ++ P VN   + F V  N+ I + L A+KGVG +  ++I+E    + P
Sbjct: 914  KFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGESAVQNIIEERKKNGP 973

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNIQKYAQW 914
            + S+ DF  RV+    N++ +ES+  AGA D FG  R Q           LD + +Y   
Sbjct: 974  YKSIFDFVERVNLTACNKKNIESMALAGAFDNFGIQREQFFTDSGKGELFLDTLVRYGNK 1033

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
             + +++    ++F  +      K  + +    +   R   E+ ++G Y S HPLD Y+ I
Sbjct: 1034 YQMDKSTAVNSLFGGDALIAIAKPEIPQCERWSDLERLNKEKELVGIYLSAHPLDEYRII 1093

Query: 975  LRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            L+ +   G  E     T++G  + L  +V   ++  T+ G   G
Sbjct: 1094 LKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTKNGKPYG 1137


>gi|257463849|ref|ZP_05628236.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
 gi|317061383|ref|ZP_07925868.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
 gi|313687059|gb|EFS23894.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
          Length = 857

 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 329/846 (38%), Positives = 525/846 (62%), Gaps = 31/846 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL +H+ YSLL+G   + + + +  A +  AIAITD  N+F ALEF QKA   G++ I
Sbjct: 4   FVHLHLHTEYSLLDGVGKIEDYMKRAKALRMKAIAITDHGNMFGALEFYQKAQKYGLKAI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG ++ +       +  +    F     ++LL    EGYQ L+ L S  YL +      R
Sbjct: 64  IGVEVYLS---EFPLEEKKGRNF----HLILLAENYEGYQNLMRLSSLAYL-EGFYYKPR 115

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA-EKRLLTFKKLFG-DRLYVNLQR 188
           I    L++  ++G++ L+   +G I       + +   E  +  ++ +FG +  Y+ +Q 
Sbjct: 116 IDKELLRKY-SKGILALSACLNGEIASYILEGAEESKIEACIREYQDIFGKENFYLEVQA 174

Query: 189 HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H   ++ + ++ +  L    ++PLVATN++ ++++ ++   DV++ +   + +S + R R
Sbjct: 175 HEEKEQRQVNEALYALGKKLQIPLVATNDTHYVNKGEHLLQDVILCIQTGSHISDEKRMR 234

Query: 248 V-TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           +   D YLK+  EM ++  +   EA++N+VEIA+RC   + +H    P +   E   I  
Sbjct: 235 IEMQDLYLKSYEEMYAMLGEQYAEAIQNSVEIAKRCQLWIPMHEFQFPDYTLPE--GIAS 292

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            EE  L+     GL  R  +G        +   +R ++EL++I +M ++GYF++V DFI 
Sbjct: 293 LEEY-LKKLTYEGLAKRYPRGL------DEAIVERAEYELSIINKMGYAGYFVVVWDFIA 345

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+K  IP+GPGRGS AGS+ AYAL IT +DPL + L+FERFLNP+R+SMPD DID CQ+
Sbjct: 346 FARKKKIPIGPGRGSAAGSLVAYALEITQLDPLEYHLIFERFLNPERISMPDIDIDICQE 405

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR E+I YV  KYG ++VAQI TFG+L+A+AA+RDVGR +++  S++D+  K IP     
Sbjct: 406 RRQEIIDYVVQKYGQDKVAQISTFGTLKARAAIRDVGRVMEVELSKIDKAAKCIP----M 461

Query: 486 PVSLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             SL+ + +++   +     D  +  ++  + ++E   RH STHAAG++I  + L++ VP
Sbjct: 462 FASLREVLEENIDLKTMYQQDVELKNVINTAIRIENKVRHISTHAAGVLITKKSLTESVP 521

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
           +Y D ++ +  TQ+ MK +E+ GL+K DFLGL+TLT+LQ++ D++ +    K+ L+ I  
Sbjct: 522 LYADSKNGIVSTQYQMKELEELGLLKIDFLGLRTLTILQRTQDYIEENTHKKIVLAEISL 581

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            D + Y +L+   + G+FQ+ES G+R  L+ ++P+   DIIAL+SLYRPGP+ + +V  +
Sbjct: 582 QDEKVYDMLSKGDSFGVFQMESRGLRSILKRLKPNSFGDIIALLSLYRPGPLGSGMVDDF 641

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK+GK+ IV  H  +  +L+ET GVI+YQEQVM+IA +++ YSL EAD+LRRAMGKK 
Sbjct: 642 IERKHGKKAIVYPHVSLQEVLEETYGVILYQEQVMKIANIMADYSLGEADLLRRAMGKKN 701

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            E M + + +FI  + K G  +  A  IF+L+ KFA YGFNKSH+AAYA+I+Y TA+ K+
Sbjct: 702 VEIMHENRSKFIERSIKKGYEREKAEEIFDLIDKFAGYGFNKSHSAAYALIAYWTAYFKS 761

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           HYP  F AA ++ E+ +++KI  +  DA+   ++I  P V  P   F V +++I ++L+A
Sbjct: 762 HYPKYFYAALLSSEISDIDKISFYFADAKAHGVEIQTPDVQFPSSRFVVKEDKILFALSA 821

Query: 842 IKGVGT 847
           IK VGT
Sbjct: 822 IKNVGT 827


>gi|76579902|gb|ABA49377.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia pseudomallei
            1710b]
          Length = 1253

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 317/753 (42%), Positives = 467/753 (62%), Gaps = 25/753 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AGI+
Sbjct: 516  PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 575

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC + I   D+    ++          ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 576  PIAGCDVWITNHDDRDKPSR----------LLLLVKDKRGYLNLCELLSKAWLTNQYRGR 625

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ LQR
Sbjct: 626  AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 685

Query: 189  HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            +   G + Y + Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R 
Sbjct: 686  YGQPGAEAYIQ-QAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 744

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   +  
Sbjct: 745  KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 802

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ L   +  GL+ RL Q       +      Y QRLDFE   I +M F GYFLIVAD
Sbjct: 803  --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 860

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF
Sbjct: 861  FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 920

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  
Sbjct: 921  CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 980

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+ 
Sbjct: 981  PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 1040

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598
              P+Y        V+Q++   +E  GL+KFDFLGL TLT+L   ++ +  L        L
Sbjct: 1041 FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 1100

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I
Sbjct: 1101 AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 1160

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMG
Sbjct: 1161 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 1220

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            KK  EEM K +E F  GA+KNG+++  +  IF+
Sbjct: 1221 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFD 1253


>gi|254495210|ref|ZP_05108134.1| DNA polymerase III, alpha subunit [Polaribacter sp. MED152]
 gi|85819562|gb|EAQ40719.1| DNA polymerase III, alpha subunit [Polaribacter sp. MED152]
          Length = 1445

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 359/1056 (33%), Positives = 569/1056 (53%), Gaps = 52/1056 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------SQ 60
            K   F HL  H+ +S+L+  + + NI+   A D  PA+A+TDT N+ ++  F        
Sbjct: 256  KDVQFAHLHNHTQFSVLQSTMQIGNIVKAAAKDNMPAVAMTDTANMMASFHFVSAVLNHN 315

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            K     ++PIIGC+ +I   ++ K  +Q    +     +VLL     GY  L ++ S + 
Sbjct: 316  KTAETPMKPIIGCEFNI--CEDHKNKSQKDNGY----QVVLLAKNKNGYHNLAKM-SSIA 368

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
             +D      RI    +++   + +I+LTG   G +         + AE+ LL +K+ F D
Sbjct: 369  FVDGFYYVPRIDKEIIKKY-KDDIIVLTGNLYGEVPSKILNLGEKQAEEALLWWKEQFQD 427

Query: 181  RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ L RH   D       +++ +  H++ +VATNN+ +L ++D  AHD+L+ V     
Sbjct: 428  DFYIELMRHNQQDENIVNETLLKFSKKHDIKIVATNNTFYLEKKDANAHDILLCVKDGEK 487

Query: 240  -VSQKDRPR------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
              + K + R         ++Y K+  EM ++F+DLPEA+ N  EI  +          +L
Sbjct: 488  QATPKGKGRGYRYGLPNEEYYFKSSDEMKTLFADLPEAIINIQEIVDKIEIFTLARDVLL 547

Query: 293  PRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            P F I  E  D +  E+   R +      +      I  G    + ++RLDFEL VI + 
Sbjct: 548  PAFDIPDEFKDARDNEDGGKRGENNFLKHLTFEGAKIRYGEITPEIKERLDFELEVIEKT 607

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             + GYFLIV DFI+ A+K ++ VGPGRGS AGSV AY L IT+IDP+++ LLFERFLNP+
Sbjct: 608  GYPGYFLIVEDFIREARKMDVAVGPGRGSAAGSVVAYCLWITNIDPIKYDLLFERFLNPE 667

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF  + R  V+ YV +KYG  +VAQIIT+G++ AK+++RD  R L +P  +
Sbjct: 668  RVSMPDIDIDFDDEGRGRVMDYVIDKYGANQVAQIITYGTMAAKSSIRDTARVLDLPLFE 727

Query: 472  VDRLCKLIP---------NDPAHPVSLQAIADDSR--FREARLADPSVDRLLEISQK--- 517
             DR+ KLIP         +DP     +  +  + +    E R      D + E   K   
Sbjct: 728  ADRIAKLIPGIKLKNIFGDDPKSKGKVDGLRAEEKQLVEELRTMSSGSDLVSETINKATI 787

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEG  R+   HA G++I    ++  VP+     SD+ VTQF+   +E AGL+K DFLGLK
Sbjct: 788  LEGSVRNTGIHACGVIITPGDITNYVPVALAKDSDMYVTQFDNSVVESAGLLKMDFLGLK 847

Query: 578  TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            TLTL++ ++  + A+ GV++D    P DD +TY L     T+GIFQ ES GM++ +  ++
Sbjct: 848  TLTLIKDTVKIVKAKHGVELDPENFPLDDEKTYELFQRGETVGIFQYESPGMQKHMRSLK 907

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            P    D+IA+ +LYRPGP++ I  + NRK+G E I    P ++  L ET G+ +YQEQVM
Sbjct: 908  PTVFADLIAMNALYRPGPMEYIPSFINRKHGTEDIEYDLPAMEEYLAETYGITVYQEQVM 967

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
             ++Q L+ ++  EADVLR+AMGKK    +DK K +FI  A KNG  +     I++    F
Sbjct: 968  LLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQAGKNGHDEEKLEKIWKDWEAF 1027

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A Y FNKSH+  YA I+YQTA++K HYP E++A+ ++  M +++ +  F ++ ++  +++
Sbjct: 1028 ASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMASVLSNNMKDIKAVSFFMEECKRMGLEV 1087

Query: 817  MPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDS 874
            + P +N   + F V  +  + + +AA+KGVG    R I+ E   +  + S+ D   RVD 
Sbjct: 1088 LGPDINESYLKFSVNQEGAVRFGMAAVKGVGAAAVRAIIAERKENGNYSSIFDLAKRVDL 1147

Query: 875  KKLNRRVLESLVFAGALDCFGYS-RMQLLQS-------LDNIQKYAQWVEKNRTNKHENI 926
            +  N++  +SL+ AGA D F  + R Q   +       L+   K+    ++N  +   ++
Sbjct: 1148 RAANKKSFDSLIKAGAFDSFSDTHRAQYFATDEKGITFLERAMKFGSKYQENENSAQVSM 1207

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP--ILRKMGIKGYE 984
            F         +  + +     +      E+ V+G Y S HPLD +K   I     +K ++
Sbjct: 1208 FGETSTVQFPEPDIPECETWGTMELLSQEKEVIGIYISAHPLDDFKNEMIFCNASLKYFK 1267

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
              +    G N+  A ++   Q + ++ G   GW +F
Sbjct: 1268 GDLNKYVGMNLSFAGIITEVQHRVSKAGK--GWASF 1301


>gi|94984363|ref|YP_603727.1| DNA polymerase III, alpha subunit [Deinococcus geothermalis DSM
            11300]
 gi|94554644|gb|ABF44558.1| DNA polymerase III, alpha subunit [Deinococcus geothermalis DSM
            11300]
          Length = 1322

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 315/721 (43%), Positives = 447/721 (61%), Gaps = 37/721 (5%)

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
            HA    +R ++EL+VI  M F  YFLIVAD+I WAK   I VGPGRGSGAGS+ AYA+ I
Sbjct: 464  HALTVLRRAEYELSVINNMGFPDYFLIVADYIGWAKDQGISVGPGRGSGAGSLVAYAIRI 523

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T++DPL F LLFERFLNPDR+SMPDFDIDF   RR EVI YVQ KYG ++VAQI TFG++
Sbjct: 524  TNLDPLEFELLFERFLNPDRISMPDFDIDFNDARRGEVIGYVQGKYGDDKVAQIATFGTM 583

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-----------QAIADDSRFREA 501
             +KA L+DV R + + Y++VD++ KLIP       SL           Q +A+D++ REA
Sbjct: 584  ASKACLKDVARVMGLEYAKVDKVSKLIPIKFGKSYSLEQAREAVPDIQQMLAEDAQLREA 643

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
                       E +QKLEGL RHAS HAAG+VIG   L+ LVP+ RD   +  V Q++MK
Sbjct: 644  ----------YEFAQKLEGLTRHASVHAAGVVIGRSQLTDLVPVMRDTSGEGMVCQYDMK 693

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
             +E  GLIK DFLGL+TL+ L ++   + + +GV++D   IPFDD +T+ LL+   T G+
Sbjct: 694  AVEDIGLIKMDFLGLRTLSFLDEAKRIMRESKGVEIDFDAIPFDDEKTFELLSRGDTKGV 753

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-----SIH 675
            FQLE +G+  A   ++P  + DIIAL +LYRPGP++NI  Y  R +G E +         
Sbjct: 754  FQLEGAGIADASRRLKPRRLADIIALSALYRPGPMENIPTYVRRHHGAEPVTYDEFPHSA 813

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
              ++ +L ET G+ +YQEQ+MQIA  ++GYSL  AD+LRRAMGKK  EEM +Q++ F+ G
Sbjct: 814  KWLEKILAETYGIPVYQEQIMQIASEVAGYSLGGADLLRRAMGKKDAEEMKRQRQLFVEG 873

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A KNG+ K     +F+LL  FA+YGFNKSH+AAY VI+YQTAW+K +YPVEF+AA +T+E
Sbjct: 874  AEKNGVPKEEGNRLFDLLDAFANYGFNKSHSAAYGVITYQTAWLKANYPVEFMAALLTVE 933

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
              + +K+ ++  DAR+ N++++PP +N    DF V    I + L AIKG+G    + I+E
Sbjct: 934  RRDSDKVAEYVSDARKMNVRVLPPDINRSSADFAVHGEEILFGLYAIKGLGEGAVQKILE 993

Query: 856  A-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
                + PF SL DFCSR+  K  NR+ +ESL+ +GA D FG  R QL++SL+    +AQ 
Sbjct: 994  EREKNGPFRSLADFCSRLGHKVCNRKAMESLIKSGAFDGFG-ERHQLMESLEEAMAWAQG 1052

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
                  +  + +F   +     K+     +      R   E+  LG Y SGHPL+ ++ +
Sbjct: 1053 AAALAQSGMDALFGMAETAPEPKLK-AGVAPYTDLQRLAIEKEALGLYISGHPLEQHEGL 1111

Query: 975  -----LRKMGIKGYEESVATIRGNNIR--LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
                  R   +  + ++     G  ++  LA M+ +  +K T+ G  +     ++ + + 
Sbjct: 1112 REAASCRISDLDTWFQAQNVAPGKRVKAVLAGMIENVVKKPTKSGGMMARFILADESGQT 1171

Query: 1028 E 1028
            E
Sbjct: 1172 E 1172



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 139/298 (46%), Gaps = 18/298 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           F HL  H+ YSLL+GA  L ++L   K      PA A+TD  N+  A+ F   A   G++
Sbjct: 24  FAHLHQHTQYSLLDGAAKLKDLLKWVKEVTPHDPACAMTDHGNMHGAVHFYNYASQLGVK 83

Query: 69  PIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           PI+G +  +      +   + G +    +  + LL     GYQ L  L SR Y  +    
Sbjct: 84  PILGYEAYVVPGFGTRRDKKPGVSGEKGIFHLTLLARDFTGYQNLCRLSSRGYT-EGYYY 142

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             RI    LQE   +G+I  +G     + +         A+ RLL ++ LFG+  ++ +Q
Sbjct: 143 KPRIDHELLQE-HHQGVIAFSGCLGSEVQQLLLQGREDEAKARLLWYRDLFGENYFIEIQ 201

Query: 188 RHRGYDRYRESQVVQLAYTHELP--LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            H   ++ R + +++ A+  EL   +VATN+  ++ + D  AH+ L+A+     ++ ++R
Sbjct: 202 DHGLPEQKRNNPILR-AWAQELGIGMVATNDGHYVKKTDATAHEALLAIQTKATLADENR 260

Query: 246 PRVTPDH-YLKNRSEM---VSIFSDLPEALENTVEIARRCSFILQV------HAPILP 293
            +   D  Y+K   EM   + +     E  +NT  IA  C+  L V        P LP
Sbjct: 261 FKFPCDEFYVKGLEEMQKALPVAEWGEEPFDNTAHIASICNVDLPVGKKRVYQMPALP 318


>gi|119962046|ref|YP_947481.1| DNA polymerase III subunit alpha [Arthrobacter aurescens TC1]
 gi|119948905|gb|ABM07816.1| DNA polymerase III, alpha subunit [Arthrobacter aurescens TC1]
          Length = 1186

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 377/1050 (35%), Positives = 559/1050 (53%), Gaps = 72/1050 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  L  + D+      PA+A TD   LF A +F +KA   GI+P
Sbjct: 8    SFVHLHTHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWRKATDKGIKP 67

Query: 70   IIGCQLDIDM------QDNLKMTNQGK-----TPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            IIG +  +        ++ ++  ++ +     +   +   + LL     G + L    S 
Sbjct: 68   IIGVEAYVTPGTARGDKERVRWGDESQRKDDVSGGGSYTHMTLLSYNNVGMRNLFRASSI 127

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L     +  R+    L    +EGLI  TG  SG +         + A +    F+ +F
Sbjct: 128  ASLDSVFGKWPRLDRELLNTY-SEGLIATTGCPSGEVQTKLRLGQYREAVEAAAEFRDIF 186

Query: 179  GDRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            G   Y       G D  R     +++LA    LPLVATN+  +  E D +AH+ L+A+  
Sbjct: 187  GAENYFCELMDHGLDIERRVTGDLLRLAKELNLPLVATNDLHYTHEHDAKAHEALLAIQS 246

Query: 237  STVVSQKDRPR-------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + + +                +YLK+  EM  +F D PEA +NT+ IA RC       A
Sbjct: 247  GSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMRELFRDHPEACDNTLLIAERCEVSFNTGA 306

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +PRF     +D    E + L  +   GL+ R  QG   K       R++ D+EL VI 
Sbjct: 307  NYMPRFPCPPGED----ETSWLVKEVDTGLKYRYPQGIPDK------VRKQADYELGVIT 356

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPL+  L+FERFLN
Sbjct: 357  SMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLIFERFLN 416

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            PDR+SMPDFD+DF   RR EVI YV  KYG ERVA I+T+G+++ K AL+D  R L  P+
Sbjct: 417  PDRVSMPDFDVDFDDRRRSEVIDYVTKKYGDERVAMIVTYGTIKTKQALKDSSRVLGYPF 476

Query: 470  SQVDRLCKLIP----------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            S  ++L K +P           D  +P S +  ++   FR+    DP   ++ E +  +E
Sbjct: 477  SMGEQLTKALPPAVMAKDIPLADIQNPES-KRYSEAGDFRQLIATDPEAAKVFETALGIE 535

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++   P+  ++P+ R  +    +TQF+    E  GLIK DFLGL+ L
Sbjct: 536  GLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFLGLRNL 595

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +L+ +   RGV +DL  +  DD  +Y LL    TLG+FQL+   MR  L+ M+PD
Sbjct: 596  TIISDALENIKMNRGVDLDLENLELDDAASYELLARGDTLGVFQLDGGPMRSLLKLMKPD 655

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI A+++LYRPGP+  +    Y  RKNG ++++ IHP ++  LKE    T G+I+YQ
Sbjct: 656  NFEDISAVLALYRPGPMGANAHTDYALRKNGIQEVIPIHPELEEPLKEILGGTFGLIVYQ 715

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM +AQ L+GYSL +AD+LRRAMGKK K E+DKQ   F  G   NG S      ++++
Sbjct: 716  EQVMAVAQKLAGYSLGQADILRRAMGKKKKSELDKQFAGFSQGMQDNGYSMAAVKTLWDI 775

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  F+DY FNK+H+AAY VISY TA++K HY  E++AA +T   D+ +K   +  + R+ 
Sbjct: 776  LLPFSDYAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDKSAIYLNECRRM 835

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871
             I ++PP VN   ++F      I + + AI+ VG      ++ A  ++  + S +DF  +
Sbjct: 836  GITVLPPDVNESSLNFTPVGTDIRFGMGAIRNVGVNVVDAMVAARKSEGKYTSFKDFLLK 895

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V +   N+R +ESL+ AGA D  G+ R  L    +        +++N      ++FA   
Sbjct: 896  VPAVVCNKRTIESLIKAGAFDSLGHHRRALAMIHEEAIDSVITLKRNEAIGQFDLFA--- 952

Query: 932  GTFSDKITLEKFSVENSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
              F D+      + E   +       +   E+ +LG Y S HPL   + +L +      E
Sbjct: 953  -GFEDQEPEASLTTEIPDLPEWEKKDKLSFERDMLGLYVSDHPLQGLEGVLSQHA----E 1007

Query: 985  ESVATI-------RGNNIRLAAMVVSKQQK 1007
            +S+ +I        G  + +A M+ S  ++
Sbjct: 1008 QSITSIIAEDGPHDGAIVTIAGMITSLSRR 1037


>gi|302866756|ref|YP_003835393.1| DNA polymerase III subunit alpha [Micromonospora aurantiaca ATCC
            27029]
 gi|315503171|ref|YP_004082058.1| DNA polymerase iii, alpha subunit [Micromonospora sp. L5]
 gi|302569615|gb|ADL45817.1| DNA polymerase III, alpha subunit [Micromonospora aurantiaca ATCC
            27029]
 gi|315409790|gb|ADU07907.1| DNA polymerase III, alpha subunit [Micromonospora sp. L5]
          Length = 1177

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 372/1071 (34%), Positives = 572/1071 (53%), Gaps = 64/1071 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YS+L+GA  L ++  + A    PA+AITD  N+  A +F ++A  AG++P
Sbjct: 4    SFAHLHVHTEYSMLDGAARLKDLFAEAARLGMPAVAITDHGNMHGANDFYKQAMDAGVKP 63

Query: 70   IIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            I+G +  +  +             +  +   +    +  + +  +  +G   L +L SR 
Sbjct: 64   ILGVEAYVAPESRFHKARVKWGRPEQKSDDVSGNGAITHMTMWAANRDGLHNLFKLNSRA 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +     +  R+ +  + E   EG++  TG  SG +           A K    ++ +FG
Sbjct: 124  SMEGHYVKWPRMDMELIAE-HAEGIMATTGCPSGAVQTRLRLGQFDEALKVAAAYQDIFG 182

Query: 180  -DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
             D  ++ +  H G D  R     + ++A   ++P V TN+S +  E   EAHDVL+ V  
Sbjct: 183  KDNYFLEIMDH-GLDIERRVRDGLTEIARKLDIPPVVTNDSHYTHEAQAEAHDVLLCVQT 241

Query: 237  STVVSQKDRPRVTPDHY-LKNRSEMVSIFSD--LPEALENTVEIARRC--SFILQVHAPI 291
             + V+  +R R     Y +K+  +M ++ S     +   NT+ +A +   + +   H  +
Sbjct: 242  GSNVADPNRFRFEGGGYFVKSADQMRAVDSSELWQQGCRNTLLVAEKVDPAGMFTFHN-L 300

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +PRF   E +     EE+  R +  AGL  R   G I +G+  Q      ++EL VI +M
Sbjct: 301  MPRFPIPEGE----TEESWFRKETFAGLARRFP-GGIPEGHVVQ-----AEYELGVIIQM 350

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFL+VADFIQWAK   I VGPGRGS AGS+ AYAL ITD+DP+   L+FERFLNP+
Sbjct: 351  GFPSYFLVVADFIQWAKSQGIAVGPGRGSAAGSLVAYALGITDLDPIPHGLIFERFLNPE 410

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVI+YV +K+G ++VAQI TFG+++AKAA++D  R L  PY+ 
Sbjct: 411  RVSMPDVDIDFDERRRGEVIKYVTDKWGEDKVAQIATFGTIKAKAAIKDSARVLGFPYAV 470

Query: 472  VDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
             DR+ K +P              DP HP   +A       R    +DP V +++E ++ +
Sbjct: 471  GDRITKAMPPAVMGKDIPLSGIFDPKHPRYAEA----GEIRGLYESDPDVKKVIETAKGI 526

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R    HAAG+++   P+ + +P+ R     + +TQF+    E  GL+K DFLGL+ 
Sbjct: 527  EGLIRQTGVHAAGVIMSAEPIIEHIPLMRRDSDGVIITQFDYPTCESLGLLKMDFLGLRN 586

Query: 579  LTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  ++ +     G ++DL  +P DD + Y LL    TLG+FQL+   MR  L  M+P
Sbjct: 587  LTIIDDAVKNIQLNHGRELDLLGLPLDDRQAYELLARGDTLGVFQLDGGPMRSLLRLMKP 646

Query: 638  DCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIY 691
            D  EDI A+++LYRPGP  +D+   Y  RKNG ++I  IHP ++  L+E    T G+I+Y
Sbjct: 647  DNFEDISAVLALYRPGPMGVDSHTNYALRKNGLQEITPIHPELEEPLREILAPTYGLIVY 706

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQV + AQ+L+GY+L +AD+LRRAMGKK KE +DK+   F  G  + G S      +++
Sbjct: 707  QEQVQRAAQILAGYTLGQADLLRRAMGKKKKEILDKEFIPFRDGCRERGYSDEAIQAVWD 766

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +L  FA Y FNK+H+AAY ++SY TA++K HYP E++AA +T   D+ +K+  +  + R+
Sbjct: 767  VLVPFAGYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKMALYLSECRR 826

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCS 870
              IQ++PP VNT    F      I + L A++ VG      IM    +K  +    DF S
Sbjct: 827  MRIQVLPPDVNTSAGPFTPVGKEIRFGLGAVRNVGANVVASIMRCREEKGDYTDFYDFLS 886

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ-SLDNIQKYAQWVEKNRTNKHENIFAH 929
            +VD+   N++ +ESL+ AGA D   + R  LL    D I  YA    K    +++   A 
Sbjct: 887  KVDAVVCNKKTIESLIKAGAFDSLQHPRKGLLAVHADAIDAYADVKRKEAVGQYDLFGAG 946

Query: 930  ----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG---IKG 982
                + G  +  + +      +   +   E+ +LG Y S HPL   + +L       I  
Sbjct: 947  FGEADTGGSTTVMPVIGEGEWDKRDKLAFEREMLGLYVSDHPLFGLEHVLGAAADTTIAA 1006

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              E      G  + LA ++   Q++ T++G      T  + A   E  FFP
Sbjct: 1007 LSEEGTVPDGAVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1057


>gi|295394749|ref|ZP_06804964.1| DNA-directed DNA polymerase III alpha subunit [Brevibacterium
            mcbrellneri ATCC 49030]
 gi|294972345|gb|EFG48205.1| DNA-directed DNA polymerase III alpha subunit [Brevibacterium
            mcbrellneri ATCC 49030]
          Length = 1178

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 384/1080 (35%), Positives = 577/1080 (53%), Gaps = 84/1080 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YS+L+GA  L +++         A+A TD   LF A +F  +A  AGI+PI
Sbjct: 5    FVHLHVHTEYSMLDGAARLGDLMAATNELGMRALATTDHGYLFGAFDFWNQATKAGIKPI 64

Query: 71   IGCQLDI-----------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
            IG +  +                 + Q +  ++  G+        + LL     G Q L 
Sbjct: 65   IGVEAYVTPGTARNDKTVVKWRTDESQRSDDVSGGGR-----YTHMTLLSRNNRGMQNLF 119

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +  S   L        R+    LQ   + GLI  TG  SG +         + A K    
Sbjct: 120  KASSLASLDSALGNRPRLDRELLQNY-SNGLIATTGCPSGEVQTRLRLGQYEEARKAAGE 178

Query: 174  FKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            ++++FG D  +  L  H    +R     +++LA    LPLVATN+  +  E D  AH+ L
Sbjct: 179  YREIFGADYYFCELMDHGLEIERRVTKDLLRLAKELNLPLVATNDLHYTHESDATAHEAL 238

Query: 232  MAVAHSTVVSQKDRPR-------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
            +A+   + + +    +           +YLK+ +EM  +F +LPEA +NT++IA  C   
Sbjct: 239  LALQSGSKLLEPTYEQGGSRFAFSGTGYYLKSPAEMRHLFKELPEACDNTLKIADMCEVS 298

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                A  +P+F   E +D    E + L  +   GL  R  QG         + R++ D+E
Sbjct: 299  FDTSANYMPKFPTPEGED----ETSWLIKEVDKGLHYRYPQGI------PDEVRKQADYE 348

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L++I +M F GYFL+VADFI W+K N I VGPGRGSGAGS+ AYA+ ITD+DPL+  L+F
Sbjct: 349  LDIIIKMGFPGYFLVVADFINWSKDNGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLIF 408

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPDFD+DF   RR EVI YV  KYG E VA I+T+G+++ K AL+D  R 
Sbjct: 409  ERFLNPERVSMPDFDVDFDDRRRSEVIDYVTQKYGSEYVAMIVTYGTIKTKQALKDAARV 468

Query: 465  LQMPYSQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            L  P+S  + L K +P              +P  P   +A      FR     +     +
Sbjct: 469  LGHPFSMGEELTKALPPAAMAKDIPLTDIENPEAPRYNEA----GDFRNLLATNEQAREV 524

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
             E ++ LEGL R    HAAG+++   P+  ++P+ R  +    +TQF+    E  GLIK 
Sbjct: 525  FETARGLEGLKRQWGVHAAGVIMSSEPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKM 584

Query: 572  DFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            DFLGL+ LT++  +L+ + + R V++DL  +  DD +TY LL    TLG+FQL+  G++ 
Sbjct: 585  DFLGLRNLTIISDALENIQRNRDVEIDLERLELDDEDTYKLLARGDTLGVFQLDGGGLQG 644

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE---- 684
             L  MQPD  EDI A ++LYRPGP+  D+   Y  RKNG ++I  IHP +   LKE    
Sbjct: 645  LLRLMQPDNFEDISATLALYRPGPMGADSHTNYAKRKNGLQEITPIHPELAEPLKEILDT 704

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+IIYQEQVM IAQ ++GYSL +AD+LRRAMGKK K E+DKQ+  F  G  + G S+ 
Sbjct: 705  TYGLIIYQEQVMAIAQKVAGYSLGQADILRRAMGKKKKAELDKQQVGFFGGMKERGYSEE 764

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
             A  ++++L  F+DY FNK+H+AAY V+SY TA++K HYP E++AA +T   DN +K+  
Sbjct: 765  AAQALWDILLPFSDYAFNKAHSAAYGVVSYWTAYLKAHYPAEYMAALLTSVGDNKDKLAV 824

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFD 863
            +  + R+ +I ++PP VN   ++F    N I + + A++ VG      I+E+  +K  F 
Sbjct: 825  YLGECRKMHITVLPPDVNESELNFTPVGNDIRFGMGAVRNVGHNVVDGIVESRTEKGAFT 884

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            S  DF  +V S   N+R +ESL+ +GA D  G++R  L++  +        V++      
Sbjct: 885  SFSDFLDKVPSHVCNKRTVESLIKSGAFDSLGHTRRALVEIHEEAVDSVVGVKRQEAAGQ 944

Query: 924  ENIFAHEKG----TFS----DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
             ++FA   G    +FS    D++  +K       + FE E  ++G Y S HPL+  + ++
Sbjct: 945  FDLFAGLGGDDAASFSVPIPDRVEWDK----KEKLAFERE--MIGLYVSDHPLNGLEGVI 998

Query: 976  RKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFF 1032
                     + ++  R  G+ I +  M+ S  ++ ++   R    VT  +     E  FF
Sbjct: 999  ASESDLPLVDLISQGRSEGSTITVCGMITSLVRRVSKNSGRPYAIVTIEDLEASIEVLFF 1058


>gi|148543981|ref|YP_001271351.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus
            reuteri DSM 20016]
 gi|184153376|ref|YP_001841717.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri
            JCM 1112]
 gi|227364894|ref|ZP_03848939.1| DnaE family DNA polymerase III catalytic subunit [Lactobacillus
            reuteri MM2-3]
 gi|325682481|ref|ZP_08161998.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri
            MM4-1A]
 gi|148531015|gb|ABQ83014.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus
            reuteri DSM 20016]
 gi|183224720|dbj|BAG25237.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri
            JCM 1112]
 gi|227070041|gb|EEI08419.1| DnaE family DNA polymerase III catalytic subunit [Lactobacillus
            reuteri MM2-3]
 gi|324978320|gb|EGC15270.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri
            MM4-1A]
          Length = 1115

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 370/1037 (35%), Positives = 559/1037 (53%), Gaps = 67/1037 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L V SSYSLL+    +++++         A+A+TD N L+ A+EF   A  AGI+PI
Sbjct: 3    FTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L + + +    T+  K        +V L     GYQ L++L +    L Q ++  +
Sbjct: 63   LGLRLVVALNE----TDGTKL------DLVFLAKNQRGYQHLMDLST----LQQTRKDKK 108

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L+  Q     G + +      P     F  S       +LT     GD   V L  + 
Sbjct: 109  ISLTIAQISPLLGELFIII----PPQSTVF--SVLAQPTSILTELANLGDDDSVLLGVNS 162

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D  +   + QL+    LPLV T+   +L+  D  A  VL A+     V  KD P +  
Sbjct: 163  RLDDVQIDTLQQLSKQLSLPLVGTSPVDYLNANDLFASRVLQAI--DAGVELKD-PTIEA 219

Query: 251  ----DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                 HYL ++ ++V  ++   L  A + TVE+A  C+  LQ  AP+LP F  +     Q
Sbjct: 220  GRRGQHYLHSKEQIVQDYNAKGLSAAAQKTVEVAALCNVELQFRAPVLPHFKNQAGIPSQ 279

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +     LR+  + GL+ R     +A G   Q Y++RL  EL VI  M F  YFLIV D +
Sbjct: 280  QY----LRSLCIQGLKKR----RVAPGKTIQQYQERLAMELKVIHEMGFDDYFLIVWDVM 331

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A +  I   PGRGS AGS+ AYAL IT++DPL++ LLFERFLNP+R  MPD D+D   
Sbjct: 332  NFAHQQKITTDPGRGSAAGSLVAYALAITEVDPLQYDLLFERFLNPERAQMPDIDLDIPD 391

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDEV++YV  KYGH+RVAQIITFG+L AK  +RDV R   +P   + RL   +P+   
Sbjct: 392  NRRDEVLQYVHQKYGHQRVAQIITFGTLAAKQVVRDVSRVFNLPRYDMQRLIDALPHG-L 450

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            H     A+ +  + +     +P    L++++Q+LEGL RH S HAAGIV+ ++PL ++VP
Sbjct: 451  HVTLKDALKESQQLKNLLDDNPKFRLLIQVAQQLEGLPRHYSIHAAGIVLSEQPLHEIVP 510

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            + +D    L +TQF    +E  GL+K DFLGLK L+++  +L  + Q     DL  I F+
Sbjct: 511  L-QDGSDGLLMTQFAKDTVEALGLLKMDFLGLKNLSIMDNTLQMIRQEDPTFDLQKINFN 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  T  L     T GIFQ ESSG+R  L  + P   EDI+A+ +LYRPGP++NI  +  R
Sbjct: 570  DQLTLQLFQRGKTEGIFQFESSGIRNVLVNLHPTNFEDIVAVNALYRPGPMENIPHFTAR 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K GKEKI    P ++ +L  T G+++YQEQVMQ+A +++G++L EAD+LRRAM KK K  
Sbjct: 630  KAGKEKITYPAPSLEKILGPTYGILVYQEQVMQLASVMAGFTLGEADLLRRAMSKKKKAT 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M+  + +FI+GA+++G S  +A  +FE + +FA+YGFN+SHA AY++++++ A++K HYP
Sbjct: 690  MEDMRTKFIAGATEHGYSAQVAHQVFEYIDRFANYGFNRSHAVAYSMMAFEMAYLKVHYP 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
              F  A M  E  N+EK+K+   DA+QF ++I  P +N     F + D  +Y+  +AIKG
Sbjct: 750  AAFFTALMNAET-NIEKLKRHVGDAKQFGVKISSPRINISESSFLLHDETVYFGFSAIKG 808

Query: 845  VGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            V       I+E   +   F  L +F +R+  +   + ++E L+++GA D  GY+R ++  
Sbjct: 809  VRRDFIAAILEERQENGKFTDLRNFIARIPERWQKQELIEPLIYSGAFDKMGYNRAEM-- 866

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLG 960
             +D + K    +E         +FA     F D          N      R   E   LG
Sbjct: 867  -IDALPKLISGIE---------LFAG-FANFDDPALQTAIDQRNEFPLLTRLTKENEYLG 915

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT----RKGSRIG 1016
             Y SGHP+  Y     ++G + +   +A +  N+   A ++V     KT    R+   + 
Sbjct: 916  VYLSGHPVTQY----YQLGQQLHATKIADLYPNS--EATIIVLTNHVKTIYTKREHREMA 969

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +V  ++     +   FP
Sbjct: 970  FVNGTDETGAIDITVFP 986


>gi|212550708|ref|YP_002309025.1| DNA polymerase III alpha subunit [Candidatus Azobacteroides
            pseudotrichonymphae genomovar. CFP2]
 gi|212548946|dbj|BAG83614.1| DNA polymerase III alpha subunit [Candidatus Azobacteroides
            pseudotrichonymphae genomovar. CFP2]
          Length = 1229

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 390/1091 (35%), Positives = 592/1091 (54%), Gaps = 97/1091 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            FVHL VHS YS L+G  S+  ++DK    +  A+A+TD  N+F   EF    C       
Sbjct: 4    FVHLHVHSYYSQLDGMSSITGLVDKACHYRMKALALTDHGNMFGIKEFYD--CIKKKNKN 61

Query: 67   ------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
                  I+PI+G +  +  +      ++ K        ++LL    +GY+ L +LVS + 
Sbjct: 62   LHKDQKIKPILGVEAYVARRTRF---DKSKKVDSNGWHLILLAKNKQGYKNLCKLVS-IS 117

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSSQVAEKRLLTFKKLFG 179
             ++      RI    L++  +EGLI  +    G I +      ++Q AE+ +L FKK+F 
Sbjct: 118  WIEGFYYRPRIDKECLEQY-SEGLIATSACLGGEIPQKILERENTQEAEQAILWFKKVFE 176

Query: 180  DRLYVNLQRHRGYDRYRESQV-----------VQLAYTHELPLVATNNSLFLSEEDYEAH 228
            +  Y+ LQRH+      +  V           ++LA T +  ++ TN+  F+ EE  EAH
Sbjct: 177  NDFYLELQRHQTNKENSDQTVFLKQTVVNQSLLKLAKTTDTKIICTNDVHFIEEEHAEAH 236

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC---SFIL 285
            D L+ +     ++   R R T   + K+  EM +IFSDLPE+L NTVEIA +    +  L
Sbjct: 237  DRLICLGTGKYLNDPKRMRYTKQEWFKSIEEMNAIFSDLPESLGNTVEIADKIEPYNIDL 296

Query: 286  QVHAPI--LPRFIEKE---CDDIQKE-------EENELRNKAVAG----LEVRLAQGAI- 328
            +   PI  +P     E   C    +E       +E++ R   + G    + ++L    + 
Sbjct: 297  ETVMPIFSIPESFATEETYCTKYTEETLRQEFNKEDKSRFDKLGGYNKVIRIKLEADYLK 356

Query: 329  ------AKGYHAQDY----RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
                  AK  +         +RL+FEL  +  M F GYFLIV DFIQ A+   + VGPGR
Sbjct: 357  ELTLQKAKNRYGNPIPNAILERLEFELETMKTMGFPGYFLIVQDFIQAARNMGVSVGPGR 416

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GS AGSV AY L ITDIDPL++ LLFERFLNPDR+SMPD DIDF  D R +++R+V  KY
Sbjct: 417  GSVAGSVVAYCLEITDIDPLKYDLLFERFLNPDRISMPDIDIDFDDDGRMDIVRWVTKKY 476

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-------- 490
            G E+VA I+T+G++  K+++RDVGR   +  ++ ++L KLIP+      S Q        
Sbjct: 477  GKEKVAHIVTYGTMATKSSIRDVGRVQGLSMTETEKLTKLIPDRLPEDESGQIPKINIKN 536

Query: 491  AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY--- 546
             I   S  RE R + + ++   L+ ++ LEG  R    HA GI+IG   L+  +P+    
Sbjct: 537  CIKYISELREVRYSNNKNLSDTLKYAEMLEGTVRQTGIHACGIIIGADDLTNFLPLATVK 596

Query: 547  -RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFD 604
             +    D+ VTQ+    IE  GLIK DFLGLKTL++++ ++  + +   K +D++ IP D
Sbjct: 597  EKRTNEDILVTQYEGSMIESIGLIKMDFLGLKTLSIIKNTIANVKRSKNKTIDINHIPND 656

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY L +   T+G+FQ ESSGM++ L  ++P   ED+IA+ +LYRPGP+  I  + NR
Sbjct: 657  DKLTYELYSRGQTIGVFQFESSGMQKYLRELRPTQFEDLIAMNALYRPGPMAYIPDFINR 716

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+ K  I+   P ++  LKET G+ +YQEQVM +++ L+G+S  ++D LR+AMGKK+K +
Sbjct: 717  KHEKNSIIYDFPEMESRLKETYGITVYQEQVMLLSRDLAGFSRGQSDELRKAMGKKLKNK 776

Query: 725  MDKQKERFISGASKNGIS-KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            M++  ++FI GA+KNG   K     I+    KFA+Y FNKSHA  Y+ ISYQTA++K HY
Sbjct: 777  MEQFHDKFIQGATKNGFGPKKKLEKIWNDWTKFAEYAFNKSHATCYSWISYQTAYLKVHY 836

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAI 842
            P EFLAA++T   DN+ +I KF  + R   I+++ P +N   ++F V  +  I + L  I
Sbjct: 837  PAEFLAANLTHNRDNIVEITKFIDECRAMGIRVLGPDINESELNFTVNKEGHIRFGLGGI 896

Query: 843  KGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQ 900
            KGVG      I+ E   +  F ++ DF  R++    N++ +ESL  +G  D F G  R Q
Sbjct: 897  KGVGKNAVETIVKEREENGAFKNIFDFIERINLTACNKKSIESLSLSGTFDSFIGIKREQ 956

Query: 901  LLQSLDN----IQKYAQWVEKNRTNKHENI---FAHEKGTFSDKITLEKFSVE-----NS 948
                  N    I+   ++  K + +K+ +I   F +     SD + + K  +      N+
Sbjct: 957  FFAENSNGETFIETLIRYGNKFQLDKNSDIGSLFGN-----SDPMGIAKLEIPLKDEWNN 1011

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILR---KMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
              R   E+ +LG Y S HPLD Y  IL+    + I  +E++  T  G  + L  MV + +
Sbjct: 1012 IERLNKEKDLLGVYVSSHPLDEYYLILKYICTLRINDFEKAKITQCGQELILGGMVTNYR 1071

Query: 1006 QKKTRKGSRIG 1016
            +  T+ GS  G
Sbjct: 1072 EGHTKAGSSFG 1082


>gi|312869124|ref|ZP_07729298.1| DNA polymerase III, alpha subunit [Lactobacillus oris PB013-T2-3]
 gi|311095370|gb|EFQ53640.1| DNA polymerase III, alpha subunit [Lactobacillus oris PB013-T2-3]
          Length = 1113

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 358/1039 (34%), Positives = 560/1039 (53%), Gaps = 70/1039 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++V L+VHSSYSLL+    + +++         A+A+TD N L+ A++F   A  AGI+P
Sbjct: 2    NYVPLEVHSSYSLLQSPTRIPDLVKAAKQRGYTALALTDQNILYGAVDFYNTARQAGIKP 61

Query: 70   IIGCQLDIDMQD----NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            ++G ++ + + +     LKMT              LL    +GY+ L+++ +R    ++G
Sbjct: 62   LLGLEITVALDELAGSQLKMT--------------LLAKNEQGYRNLMDISTRQQTAERG 107

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-- 183
            K    I  + L  +  E +++L      P+  A   N  +     L + ++  G  LY  
Sbjct: 108  KT---ITFTELAGLLKEVVVIL------PVQLAVL-NLIRQGTGWLTSLQQTVGRNLYLG 157

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +NLQ     D    S + + A    +P+VAT    +L+  D  A   L A+     ++  
Sbjct: 158  INLQ----LDEVERSSLQRFAQEAGVPIVATTPVDYLNATDLFATKTLQAIGQGAQLTDL 213

Query: 244  D-RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            D +   T D+YL  R ++ + +  L    A++NT  IA +C+  L+  AP+LP +     
Sbjct: 214  DAQATATGDNYLPVRQQVEAAYHQLGLAAAVDNTAVIADQCNVELKFQAPVLPHYQTPHG 273

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +       + LR   +AGL+ R     +A GY A  YRQRLD EL +I RM F  YFLIV
Sbjct: 274  E----TAVDYLRQLCLAGLKKR----PLAAGYSATAYRQRLDHELAIIHRMGFDDYFLIV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +A +  I   PGRGS AGS+ AYAL IT++DPL + LLFERFLNP+R  MPD D+
Sbjct: 326  WDVMNFAHRTKITTDPGRGSAAGSLVAYALAITEVDPLEYQLLFERFLNPERAQMPDIDL 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV  KYGHERVAQIITFG+L AK  LRDV R  ++   +   L   +P
Sbjct: 386  DIPDNRREEVLAYVHRKYGHERVAQIITFGTLAAKQVLRDVSRVFKLTKFETTTLLDALP 445

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
               +  +  QA+A+  R +      P + +L +++++LEGL RH STHAAGIV+   PL 
Sbjct: 446  RGGSFTLD-QALAESQRLKNLLNDQPKLRQLFQVARQLEGLPRHYSTHAAGIVLSAAPLH 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            ++VP+ +     L +TQF    +E  GL+K DFLGL+ L+++  +L  + Q+  +  L  
Sbjct: 505  EIVPL-QAGSEGLLMTQFPKDTVEALGLLKMDFLGLRNLSIMDNTLRMIRQQEPQFSLER 563

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +   D  T  L     T G+FQ ES+G+R  L  + PD  EDI+A+ +LYRPGP++NI  
Sbjct: 564  VSLADPATLQLFQRGQTDGVFQFESAGIRNVLTALHPDHFEDIVAVNALYRPGPLENISH 623

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RK G+E +      + P+L  T G+++YQEQVMQ+A  ++G++L EAD+LRRAM KK
Sbjct: 624  FIARKQGQEPVRLPDQSLAPILAPTYGILVYQEQVMQLASAMAGFTLGEADLLRRAMSKK 683

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K+ MD  + +F++GA   G    +A  +F+ + +FA+YGFN+SHA AY+ ++++ A++K
Sbjct: 684  KKQTMDNMRAKFMAGARAKGYQSALASQVFDYIDQFANYGFNRSHAVAYSKMAFEMAYLK 743

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYP EF  A +  E  N+ K+++   +A++  ++I  P +N     F V D +IY+ L 
Sbjct: 744  CHYPTEFYTALLNAE-GNITKLRQHVTNAQRMGVKINGPRINLSRAQFTVHDQQIYFGLT 802

Query: 841  AIKGVGTT-TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AIKG      A  + E  ++  F  + D   R+  K     VL  L++AGALD  GY+R 
Sbjct: 803  AIKGGRRDFIADLLQERDSNGSFKDIRDLIHRLPDKWQKEEVLTPLIYAGALDGLGYNRA 862

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQ 956
            ++++SL N+    +            + A   G   D       S       + R   E 
Sbjct: 863  EMIESLPNLLSGIE------------LLATLPGLSGDPSLQSSISHRQEYPLTTRLAKEN 910

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSR- 1014
             +LG Y SGHP+  Y    R++  +     VA +R N  + L   +   +   T+K  R 
Sbjct: 911  ELLGVYLSGHPVSQY----RQLASRLRAGRVADLRPNQRVTLILFINRVKVIHTKKDHRP 966

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + +++ S+ +   +   FP
Sbjct: 967  MAFISGSDESGLLDVTVFP 985


>gi|126651370|ref|ZP_01723577.1| DNA polymerase III DnaE [Bacillus sp. B14905]
 gi|126591899|gb|EAZ85982.1| DNA polymerase III DnaE [Bacillus sp. B14905]
          Length = 1020

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 353/1023 (34%), Positives = 551/1023 (53%), Gaps = 50/1023 (4%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75
            +H+S  LL+  + L  ++  +   +  A AI +T  L+  L F +    A I  +IG  +
Sbjct: 1    MHTSADLLKSTIRLEQLIPFLQEQKTQACAIVNTK-LYGLLPFCKAMQQANIHAVIGLSI 59

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            ++   D           FP    +VL   + EGYQ L+++ S + +    ++   +   W
Sbjct: 60   NVQWHDKT---------FP----LVLYAQSQEGYQHLLKISSAVSI----REDEVLPWKW 102

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY 195
            L+      L +L+    G +       S+            LF    Y+ + R  G  + 
Sbjct: 103  LKGYAAGCLALLSSDDIGDVKDWQALVSA---------LAHLFQHHFYMGITRPGGVTQA 153

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
             E ++++      +PLVA  +  FL  +D+ A++V  A+     +           ++  
Sbjct: 154  NEKELIEWCEGQAIPLVAVQSCYFLRPDDHFAYEVARAIDTGDKLGDTMLTANLQGYFAP 213

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
               E  S F+D PE LE+  ++   C  I+   +  +P+F       + +  E+ L  +A
Sbjct: 214  TAQEWQSWFADRPEWLESCGQMLASCHAIIPEMSVQMPKFPVP----VGETAESLLVKEA 269

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
             AGLE R  Q  I  GY     R+RL +EL +I  M ++ YFL+VADF+++AK N I  G
Sbjct: 270  FAGLEGRFNQMDIPNGY-----RERLQYELEIICSMGYADYFLVVADFMRFAKDNRILTG 324

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
            PGRGS AGS+ AY+L IT +DPL + LLFERFLNP+R+S+PD DIDF   +R +VI+YV 
Sbjct: 325  PGRGSSAGSLVAYSLAITQVDPLAYGLLFERFLNPERISLPDIDIDFVDSKRHQVIQYVA 384

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
             KYG   V QIITFG+L AKA  RDV R        ++++ K+IPN P   ++LQ   ++
Sbjct: 385  QKYGKANVGQIITFGTLSAKAVARDVARVFSFGAETLEKISKMIPNKPG--ITLQKALEE 442

Query: 496  SRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
            S   +  L+ D    R  +++ KLEGL R++STHAAG+VI   PL   VP+  D    + 
Sbjct: 443  SYDLQGWLSEDEQHQRWFDVALKLEGLPRNSSTHAAGVVIAPSPLVNTVPI-EDGHEGIY 501

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
             TQ+ M  IE  GL+K DFLGL+ LT+L Q         G  +D   IP  D +T+ LL 
Sbjct: 502  CTQWPMGDIEACGLVKMDFLGLRNLTILEQMRWSIYKAGGPWIDFERIPMHDEKTFQLLQ 561

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
               T GIFQLES GM+QAL  + P    DI A+ +LYRPGP++ I VY  RK GKE +V 
Sbjct: 562  KGDTSGIFQLESEGMKQALRDIHPTHFLDIAAVNALYRPGPMEFIPVYAKRKAGKEMVVM 621

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
             HP+++P+L+ET GVI+YQEQ+++IA +L+G+S+ +AD+LRRA+ KK ++ +++Q+  F+
Sbjct: 622  PHPVLEPILQETFGVIVYQEQIIKIASVLAGFSMGQADLLRRAVSKKNRQVLEEQQVSFV 681

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
             GA K G  + +A  ++EL+ +FADYGF KSHA AY+VISYQ A++K H+P  F AA ++
Sbjct: 682  QGALKQGYDQQVATEVYELIVRFADYGFPKSHAVAYSVISYQMAYLKAHFPQSFYAALLS 741

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
                N++KI++  Q+A+   I   PPS+      F V    I YSL+ IKGV  T   +I
Sbjct: 742  NATGNIDKIQQLVQEAKDKGIPFYPPSLKDSTKYFTVEQEGIRYSLSGIKGVPHTFIENI 801

Query: 854  MEASADKP--FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
                   P    +L D    + ++    +V+E+L++AGALD     R  L+ ++D   K+
Sbjct: 802  HTLRQSNPLALHNLFDLAVALSAQHFKPKVIEALIYAGALDYLEKDRAVLIMTIDAALKH 861

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            A+ +   R  +  +I    + +F     ++   +     +  +E+  LGFY S HP  V 
Sbjct: 862  AELL---RPTEDIDISTATEFSFGKPKYMQVDDMPQKE-KLMHEKESLGFYISAHP--VT 915

Query: 972  KPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            +  L    +      +  +R G  +++  ++   ++ +T+KG ++ +V   +      A 
Sbjct: 916  QERLYWADVNSTCRELKQMRDGTYVKMIGVIEEVKKIRTKKGEQMAFVQLQDEHGAVSAT 975

Query: 1031 FFP 1033
             FP
Sbjct: 976  LFP 978


>gi|262037946|ref|ZP_06011366.1| DNA polymerase III subunit alpha [Leptotrichia goodfellowii F0264]
 gi|261748024|gb|EEY35443.1| DNA polymerase III subunit alpha [Leptotrichia goodfellowii F0264]
          Length = 1151

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 350/989 (35%), Positives = 568/989 (57%), Gaps = 64/989 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           VHL+VH+ YSLLEG   +   +++        +A+TDT+ +F  +EF +K   +GI+P+I
Sbjct: 6   VHLKVHTEYSLLEGVGKIEEYVERAKFMGIKTLAVTDTS-MFGVIEFYKKCIKSGIKPVI 64

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++ +D      + ++G+       S+ LL    +GY R +  +S +      ++  +I
Sbjct: 65  GLEVFLD-----GIVSEGEY------SLTLLAKNKKGY-RNLSKLSSLSYSRFNRRRNKI 112

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               L E  ++ L +L+GG    I +         A+K  +   K F +  ++ +   + 
Sbjct: 113 KYEELLEYSSD-LYILSGGIHSEIIKGISEYKYPEAKKVAVKLAKDFKENFFLEVPAVKR 171

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            +  R+S + ++     +  + TN+  + ++ +     ++ ++     +          D
Sbjct: 172 LESVRKS-LKEMIKEISVGYLITNDVYYPNKGEAVLQKIMSSIKEGNKIETVQNDIFYDD 230

Query: 252 HYLKNRSEMVSIFSD----LPEALENTVEIARRC----------------------SFIL 285
            YLK+  E+   F        E ++NTV +A  C                      SF +
Sbjct: 231 LYLKSFDEIKESFLQDEEFFDEGMKNTVILAENCNTDFEFDVFKFPEYELPEGISESFYI 290

Query: 286 Q--VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
           +  V+  I  +++++  +   +++ENE+R K +A                 +D  +R D+
Sbjct: 291 RKLVYEGIAKKYLKENIEITTEDQENEIRKKLIAK--------------DREDVFKRADY 336

Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
           EL VI  M ++GYF+IV DFI++AK++ + VGPGRGS AGS+ +YAL IT+IDPL+++L+
Sbjct: 337 ELEVINSMGYNGYFIIVWDFIKFAKESGVYVGPGRGSAAGSLVSYALNITEIDPLKYNLI 396

Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           FERFLNP+R+SMPD DIDF Q++R+ VI YV NKYG++ VA IITFG+L+A+AA+RDVGR
Sbjct: 397 FERFLNPERISMPDIDIDFDQEQREIVIDYVLNKYGNKYVAHIITFGTLKARAAIRDVGR 456

Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            L +   +VD+  KLIP +     +L ++      RE   +D  +  +++ S K+EG  R
Sbjct: 457 VLNVSLKKVDKAAKLIPFNMDLEKALDSVGS---LREMYNSDNEIKTMIDYSLKIEGRVR 513

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
           HAS HAAG+VI    L + +P Y D ++ +  TQ+ MK +E+ G++K DFLGLK LT+L+
Sbjct: 514 HASVHAAGVVISKDVLDEEIPTYSDGKTPILSTQYQMKELEELGILKMDFLGLKNLTILR 573

Query: 584 KSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
           K+++ + + +G  +    I  ++ + Y L+T   TLGIFQ ES G+R+ ++ ++ +  ED
Sbjct: 574 KTIENIEKNKGEILRTENINLENKKAYKLMTEADTLGIFQCESPGIRKLMKKLKIEKFED 633

Query: 643 IIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
           I AL++LYRPGP+ + +V  +   KN + KI      +  +L+ET GVI+YQEQVM+IA 
Sbjct: 634 ITALLALYRPGPLQSGMVEDFIAAKNAEAKIKYPDESLKEILEETYGVILYQEQVMKIAS 693

Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            ++ YSL EAD LRRA+GKKI   +++ +E+F+  A +N +S+  A  I+ L+ KF  YG
Sbjct: 694 EMAKYSLGEADQLRRAIGKKIPAIIEENREKFVKKAQENNVSREKADRIYNLIDKFGGYG 753

Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
           FNKSH+AAYA+I Y TA+ K +YP+EF AA MT EM N+E++  F  +AR   I+I+ P 
Sbjct: 754 FNKSHSAAYALIVYWTAYFKANYPLEFFAAIMTTEMYNIERLSLFINEARGKGIEILVPD 813

Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
           VN    DFKV ++ I + L AIKGVG    R IME      F S EDF  R+  + LN++
Sbjct: 814 VNLSDYDFKVEESGIRFGLVAIKGVGGNFVREIMEERESGIFVSYEDFVYRMKQRGLNKK 873

Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
            LESL+ +G+LD    +R +  +S++ + +++Q   ++  +    +F  +     D   +
Sbjct: 874 QLESLILSGSLDNLDGNRKEKTESINKVMEWSQKKYESEEDLQMILFGGKSKKIGD-FQM 932

Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLD 969
           +K    + S+  +NE+  LG Y S HPLD
Sbjct: 933 DKTEEYSQSILLKNEREYLGIYVSSHPLD 961


>gi|21673669|ref|NP_661734.1| DNA polymerase III, alpha subunit [Chlorobium tepidum TLS]
 gi|21646788|gb|AAM72076.1| DNA polymerase III, alpha subunit [Chlorobium tepidum TLS]
          Length = 1190

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 358/1025 (34%), Positives = 563/1025 (54%), Gaps = 84/1025 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            L  +  FVHL  H+ YS+    +   ++          A+A+TD   +F+  E   +A  
Sbjct: 5    LRSALEFVHLHTHTHYSMQSSPIFPGDLFAACKKQGMTAVAVTDYGAMFNMPELFGQAKK 64

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            A ++ I+G ++         +   G        +++LL+    GY+ +  ++SR      
Sbjct: 65   AEVKLIMGAEI--------YLAGTGSRDSGKPATLILLIRDDIGYRNMCVILSRAARDGF 116

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  +  S L+E   +GL+ L+   SG I RA    +   A      ++ L+G+  Y+
Sbjct: 117  SNGLPHVDRSVLEEC-RDGLVCLSAAHSGLIGRALLSGNETEAANFANYYRDLYGEHFYL 175

Query: 185  NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ+H   Y+       ++L+    +PLVATNN  +L   D   +  ++A      ++ +
Sbjct: 176  ELQKHGAPYEEQLVPGTIRLSEQLGIPLVATNNVHYLDRRDSGCYRAMIANRTKQRLNSQ 235

Query: 244  DRPRVTPDH--YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            +  +  P H  Y K+ +EM  +F +    L+NTV+IA  CS+      P LP+F   E  
Sbjct: 236  NL-QCLPGHENYFKSAAEMSLLFDNAHGELDNTVKIAEACSYTFINKDPHLPKFPLPEGF 294

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D +KE    LR+    G + +      A G   ++ + R++ EL VI +M +S YFLIV+
Sbjct: 295  DSEKEY---LRHLTWEGAKEKYGA---ADGTIPEEVKARIELELGVIEKMGYSAYFLIVS 348

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D I  ++K    VGPGRGS AGS+ AY   IT IDPL++ LLFERFLNP+R+SMPD DID
Sbjct: 349  DLIAASRKMGYSVGPGRGSAAGSIIAYLTGITRIDPLKYKLLFERFLNPERISMPDIDID 408

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F    + +V+ Y   KYG E VA+++  G+L AKAA+RD GR L +P   VD+L KL+P+
Sbjct: 409  FTPVGKQKVLDYTVQKYGAESVAKVVAIGTLGAKAAIRDAGRVLDVPLKAVDQLAKLVPS 468

Query: 482  DPAHPVSLQAIADDSRFREARL------ADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             P   +       +  FRE +        DP   +L++ ++ +EG  R+ S HA  +VI 
Sbjct: 469  RPGTSL-------EDAFREVKELKRLVDTDPQYQQLVQYARAMEGRARNVSMHAGAVVIT 521

Query: 536  DRPLSQLVPMYRDVRSDLP--------------------------VTQFNMKWIEKAGLI 569
            D  L + VP+Y   + +                            VTQF+   IE+AGL+
Sbjct: 522  DGALEEQVPLYVSNKIETEERKYADEFDQNDIDGTKAESSDEKQVVTQFDKNCIEQAGLL 581

Query: 570  KFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K D+LGL+TL ++ ++L  + +R G+ +DL  +P DD +T+ +       GIFQ ESSGM
Sbjct: 582  KIDYLGLETLAVIDETLRLIKKRHGIDIDLEKVPMDDRKTFRIFQEGKMAGIFQFESSGM 641

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIV--------VYNNRKNGKEKIVSIHPLIDP 680
            +  +  +QP  I DIIA+ +LYRPG ++ ++        ++ +RK+G+E+I  +HP+++ 
Sbjct: 642  QSYMMRLQPTTIGDIIAMSALYRPGALNAVIDEHRNAVDLFIDRKHGREEIDYMHPMLEE 701

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +LKET GVI+YQEQVMQI+Q++  +SL +AD LR+AMGKK  + M K KE F+ GA+   
Sbjct: 702  ILKETYGVIVYQEQVMQISQVMGRFSLGKADNLRKAMGKKDPKLMQKFKEEFVEGAASID 761

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            ++K +A  IF+L+A+FA YGFNKSH+AAY V++Y TA++K HY +EF+ A +  E+ + E
Sbjct: 762  VNKALATRIFDLMAEFAGYGFNKSHSAAYGVLAYWTAYLKAHYTIEFITAILNSEIGDTE 821

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEA 856
            ++K    +A+ F I ++PPS+N     F V +++    I   L+AIK VG   AR ++ A
Sbjct: 822  RMKHLTDEAKGFGIFMLPPSINKSDALFSVEEHKGRPCIRVGLSAIKQVG-GGARAVVAA 880

Query: 857  SA---DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
                  KPF +L D  + VD + +NR+ LE L+ AGALD    +R +LL ++D   K+ Q
Sbjct: 881  RLRRDGKPFLNLFDLTASVDLRAMNRKALECLIQAGALDEIDPNRGKLLANVDKAIKFGQ 940

Query: 914  WVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS-----SVRFENEQRVLGFYFSGHP 967
               K  T      F  +   FSD +  +    ++N+     S + + E+R++GFY S HP
Sbjct: 941  IQNKAVTLGQGGFFNDD---FSDGQAGVHYPDLDNAEPMPESEKLQYEKRLVGFYLSHHP 997

Query: 968  LDVYK 972
            LD ++
Sbjct: 998  LDRFR 1002


>gi|169348422|ref|ZP_02866360.1| hypothetical protein CLOSPI_00137 [Clostridium spiroforme DSM 1552]
 gi|169293891|gb|EDS76024.1| hypothetical protein CLOSPI_00137 [Clostridium spiroforme DSM 1552]
          Length = 1017

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 366/1027 (35%), Positives = 566/1027 (55%), Gaps = 60/1027 (5%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQV+S+YS     + + ++  K +     A+A+TD +N+F A+EF++      I+PI G
Sbjct: 4    HLQVYSAYSFQNSTILIEDLCKKASDLHYEALALTDKDNMFGAMEFTKCCAKYRIKPIYG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             +  +++   +         +P    ++LL     GY  L+++ S + L D         
Sbjct: 64   LEASVEIDHEI---------YP----LILLAKNTSGYFSLVKITSDISLSDNKAIKFDDL 110

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            +        E L +L+G   G I+R         A K L  FK  F D  YV LQ H   
Sbjct: 111  VKH-----QEHLFVLSGCKEGIIERLILKELDSEALKYLKLFKNSF-DNFYVCLQNHNLA 164

Query: 193  DRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             +++   ++V L     +P+  +N   +L  ++    ++L A +    +     P VT  
Sbjct: 165  MQHKVNERLVALTLLENIPICVSNEVRYLESKEAYTLELLQAFSKGQTLDINHEP-VTDQ 223

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQKEEENE 310
             YLK+  EM SIF    + +ENT  I   C+  + +H   LP++ + K  +       + 
Sbjct: 224  LYLKSSYEMESIFD--KKYIENTDYIINLCNASIPLHHMHLPKYPVPKNGN-----ASDY 276

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L+     GL+ R     I   Y      QRL  EL+VI +M F  YFLIV D++++AK N
Sbjct: 277  LKQLCSVGLKKRFKNQKINTVY-----LQRLKKELDVIKKMGFDDYFLIVFDYVRYAKIN 331

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I VGPGRGS AGS+ AY L IT+IDPL+++L+FERFLN +R+SMPD DIDF  DRRDE+
Sbjct: 332  KILVGPGRGSAAGSLVAYVLGITNIDPLKYNLVFERFLNEERVSMPDIDIDFQDDRRDEI 391

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV NKYG E V QI+TF +   K A++D+G+ L +   +++ L K IP  P +  S +
Sbjct: 392  VEYVTNKYGQEHVGQIVTFSTYGPKVAIKDLGKVLGITLPRLELLAKNIPTGPKNRKSAK 451

Query: 491  AIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             + + S  F+     D ++ R++     +E L R+ STHAAG+V+ +  L+Q+VP+ R  
Sbjct: 452  EVYETSYNFQSMVNRDLALRRIMPSVFIVEKLPRNISTHAAGVVLSNDRLNQVVPLTRGP 511

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHET 608
             + + VTQ++  +IE  GL+K DFLGLK LT++   L D     G K++++ I  +D +T
Sbjct: 512  NNGI-VTQYSKDYIEDVGLLKMDFLGLKNLTIIDYILKDIEKNDGRKININEIELNDKKT 570

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + L++   T GIFQLES GM+  L  MQ +C++D+IA ++L+RPGP+ NI  Y  RK G+
Sbjct: 571  FQLISRGDTFGIFQLESPGMKNLLIKMQCNCLDDLIAAIALFRPGPMANIPAYIARKKGE 630

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E +      + P+L  T G+IIYQEQ+MQ+AQ ++G+SL++AD+LR+AM  KI   M   
Sbjct: 631  EPVTYPLDCLKPILSSTYGIIIYQEQIMQVAQRVAGFSLAKADILRKAMSDKIVSLMASM 690

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K  FISG   NG S++ AV IFEL+ KFA+YGFNK+H+ AY  ++Y  A++K +YP+EF 
Sbjct: 691  KTEFISGGIANGFSESEAVGIFELIEKFANYGFNKAHSVAYGYVAYWLAYLKANYPLEFF 750

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            +A ++ E  +        Q+ +++ ++I+PPS+N     FKV D  I YSL AIK VG  
Sbjct: 751  SALLSNEQSSDSNKINCIQEGKKYGVKILPPSINYSTDRFKVEDGNIRYSLLAIKNVGYA 810

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
              + I++      F  + DF SR++S KLN ++++SL+ AGA D F  +R  +  +L +I
Sbjct: 811  GYQAIIQEREKGLFKDVFDFISRMESSKLNSKMIDSLIMAGAFDEFELNRSTIKYNLSHI 870

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +YAQ   KN     E             +T+ K   +N     E E+ VLG Y S HP+
Sbjct: 871  MEYAQL--KNMIGIDE----------PPILTIVK---DNRMKILEEEKLVLGVYLSMHPI 915

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT---RKGSRIGWVTFSEPAK 1025
             + K  L    I     SV+ +  N  +   +V++  + K    +KG  + +V   +   
Sbjct: 916  ALIKQNLNLKII-----SVSELHNNIDKYVTIVMAISRVKAIVDKKGQEMCFVDGYDETG 970

Query: 1026 EYEANFF 1032
            E +   F
Sbjct: 971  EIDGVVF 977


>gi|311113352|ref|YP_003984574.1| DNA-directed DNA polymerase III subunit alpha [Rothia dentocariosa
           ATCC 17931]
 gi|310944846|gb|ADP41140.1| DNA-directed DNA polymerase III alpha subunit [Rothia dentocariosa
           ATCC 17931]
          Length = 1180

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 373/998 (37%), Positives = 542/998 (54%), Gaps = 55/998 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            F HL VH+ YS+L+GA  L ++          ++A +D   LF A +F ++A A  I+P
Sbjct: 5   GFAHLHVHTEYSMLDGAARLGDLFQYARELGMDSMATSDHGFLFGAFDFWRQAKANDIKP 64

Query: 70  IIGCQL------------DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
           IIG +              +   D  +    G   +     + +   T EG   L    S
Sbjct: 65  IIGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYT---HMTMWAETTEGMHNLFRASS 121

Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              L  Q  +  R+    LQ   ++GLI  TG  SG I         Q A      F+ +
Sbjct: 122 VASLEGQLYKP-RMDREVLQTY-SKGLIATTGCPSGEIQTRLRLGQYQEAVAAAAEFRDI 179

Query: 178 FG-DRLYVNLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
           FG D  Y  +  H G D  R  Q  + +LA    LP VATN+  +  +ED+ AH  L+ V
Sbjct: 180 FGKDNFYCEVMDH-GLDIERNVQADLHRLAKELNLPFVATNDLHYTRQEDHTAHAALLCV 238

Query: 235 AHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
              + ++   R +   D+ YL++  EM  IF D+P A ENT+EIA RC+      A  +P
Sbjct: 239 QSGSTLTDPKRFKFDADNFYLRSPEEMYQIFGDVPGACENTLEIAERCNVEFNTKANYMP 298

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            F   E ++    EE+    +   GL  R   G   K       R++ ++E+ VI  M F
Sbjct: 299 NFPVPEGEN----EESWFVKEVERGLHYRFPNGVPDK------VREQAEYEVGVITSMGF 348

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
            GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD++PL   L+FERFLNPDR+
Sbjct: 349 PGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLNPLNHDLIFERFLNPDRV 408

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
           SMPDFD+DF   RR EVI YV  KYG ++VAQI+TFG+++AK AL+D  R +  PYS  +
Sbjct: 409 SMPDFDVDFDDRRRAEVIDYVTEKYGEDKVAQIVTFGTIKAKQALKDASRVMDQPYSVGE 468

Query: 474 RLCKLIPNDP-AHPVSLQAI--ADDSRFREA----RLADPSVDRL----LEISQKLEGLY 522
           RL K +P D     ++L  +   +D R+ EA     L +  VD++     E ++ LEGL 
Sbjct: 469 RLTKAMPPDVMGKNIALANVYNPEDKRYSEAGDLRALIEDPVDKIYGEVFETAKGLEGLK 528

Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
           R    HAAG+++  + L+ ++P+ R       +TQF+    E  GLIK DFLGL+ LT++
Sbjct: 529 RQWGVHAAGVIMSSKNLTDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTII 588

Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
             +LD +   RG+++DL  +  DD E+Y LL    TLG+FQL+   MR  L+ M+P+  E
Sbjct: 589 SDALDNVKMNRGIEIDLENLEVDDKESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEFE 648

Query: 642 DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            I A+++LYRPGP+  ++   Y  RKNGK++I  IHP ++  L E    T G+I+YQEQV
Sbjct: 649 HISAVLALYRPGPMGANSHTNYALRKNGKQEIQPIHPELEEPLAEILDTTYGLIVYQEQV 708

Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           M IAQ ++ Y+L EAD+LRRAMGKK K E+DKQ E F  G   NG S+     ++++L  
Sbjct: 709 MAIAQKVANYTLGEADLLRRAMGKKKKAELDKQYEAFHDGMISNGYSEGAVKALWDILLP 768

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
           F+DY FNK+H AAY ++SY TA++K HYP E++AA +T   DN +K+  +  + R   I 
Sbjct: 769 FSDYAFNKAHTAAYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGIT 828

Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDS 874
           ++PP VN   + F      I + + AI+ VG      ++ A  +K  F+S  DF  +V  
Sbjct: 829 VLPPDVNESTLTFAPVGKDIRFGMGAIRNVGANVVDGMIAAREEKGHFESFNDFLKKVPL 888

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKG 932
              N+R +ESL+ AGA D   ++R  L    ++    A  V++       ++F       
Sbjct: 889 VVCNKRTIESLIKAGAFDELKHTRRSLSLVHESAVDAAVSVKRKEAAGQFDLFGSLGMDD 948

Query: 933 TFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPL 968
              D +++    + +   R     E+ +LG Y S HPL
Sbjct: 949 ALGDDLSVTVPDIPDWERREKLNFEREMLGLYVSDHPL 986


>gi|300726853|ref|ZP_07060283.1| DNA polymerase III, alpha subunit [Prevotella bryantii B14]
 gi|299775966|gb|EFI72546.1| DNA polymerase III, alpha subunit [Prevotella bryantii B14]
          Length = 1235

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 383/1114 (34%), Positives = 572/1114 (51%), Gaps = 101/1114 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------SQ 60
            FVHL VH+ YS+L+G   +  ++DK   D    +AITD   +F   EF           +
Sbjct: 4    FVHLHVHTHYSILDGQSKIPRLVDKAIQDGMKGMAITDHGVMFGIKEFVDYCSGVNKGRK 63

Query: 61   KACAAGIQPIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            K      +PIIGC++ +    ++D +K  N  ++ +     +++L    EGY+ LI+LVS
Sbjct: 64   KEGLEPFKPIIGCEMYVAHHRLEDKVK-ENGDQSGY----HLIVLAKNYEGYKNLIKLVS 118

Query: 118  RMYL--LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            R ++       ++ R+ L    E   EGLI+ +   +G +           A + L  + 
Sbjct: 119  RSWVDGYYYRPRTDRVDL----EKYHEGLIVCSACIAGEVPAKIIKGDIAGAREALEWYH 174

Query: 176  KLFGDRLYVNLQRHRGYDRY----RES---------QVVQLAYTHELPLVATNNSLFLSE 222
            ++FG+  Y+ LQRH   D      RE+          ++  A  + + L+ +N+  F  +
Sbjct: 175  RVFGEDYYLELQRHEVKDPVIMANREAFPLQQKANKVLIDFAKEYGIKLICSNDVHFEDK 234

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
            E  EAHD L+ ++    +    R R +   + K R EM  +FSD+PEAL NT++I  +  
Sbjct: 235  ETAEAHDHLLCLSTGKDLDDPMRMRYSKQEWFKTREEMNEVFSDVPEALSNTLDILDKVE 294

Query: 283  FILQVHAPILPRFIEKEC----DDIQKEEENE---------------------------- 310
                 H PI+P F   E     DDI+K+   E                            
Sbjct: 295  MYSIDHGPIMPFFPIPESFGTEDDIRKKFSTEDLLKEFSSDENGDNTLPREDGLKKIESL 354

Query: 311  ------LRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVA 361
                   R K  A    +LA     K Y     Q+ ++ ++FEL+V+  M F GYFLIV+
Sbjct: 355  GGWDKVYRIKYEAEYLAKLAYDGAKKLYGDPLPQNVKEHVNFELHVMKTMGFPGYFLIVS 414

Query: 362  DFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            DFI+ A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D 
Sbjct: 415  DFIRAAREELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDT 474

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  D R +V+R+V +KYGHE  A IIT+ S+  K +++DV R  ++P  + + LCK IP
Sbjct: 475  DFDDDGRGKVLRWVMDKYGHENCAHIITYSSMATKNSIKDVARVEKLPLDRSNALCKAIP 534

Query: 481  NDPAHPVSLQ---AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +     + +    AI      REA  + DP     ++ ++ LEG  R    HA G +I  
Sbjct: 535  DRLPDGLKMNLTNAIKCTPELREAESSSDPRERNTIKYAKMLEGTVRGTGIHACGFIICR 594

Query: 537  RPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             P+S  VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   + Q
Sbjct: 595  DPISNWVPVSTADDPDFPGLKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVVKQ 654

Query: 592  R-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              GV+VDL  IP DD  TY L     T+G FQ ES+GM++ L  ++P   ED+IA+ +LY
Sbjct: 655  TTGVEVDLDNIPIDDELTYKLYQEGRTIGTFQFESAGMQKYLRELKPTVFEDLIAMNALY 714

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  +  RKNG+E+I    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+
Sbjct: 715  RPGPMDYIPSFIARKNGREEIKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLASFTRGES 774

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D LR+AMGKK K  +D+ K +F+    +NG    +   I+    KFA Y FNKSHA  Y+
Sbjct: 775  DALRKAMGKKKKAIVDQMKPKFLKQGQENGHDPKVLEKIWGDWEKFASYAFNKSHATCYS 834

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++YQTA+MK HYP EF+AA MT     + +I K  ++ +   IQ + P VN     F V
Sbjct: 835  WVAYQTAYMKAHYPAEFMAALMTRRFSQITEITKLMEECKSMGIQTLGPDVNESYSGFGV 894

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D   I + L+AIKG+G   A  I+ E   + P+ S+ DF  RVD   +NR+  ESL  +
Sbjct: 895  NDKGEIRFGLSAIKGMGGNAAASIVAERQKNGPYKSIFDFAERVDFGSVNRKAFESLALS 954

Query: 889  GALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            G  D FG  R Q   +       LD + KY Q  +  +     ++F            + 
Sbjct: 955  GGFDGFGLRREQYFGTSAKGEVFLDTLVKYGQLFQAEQMEAQTSLFGGADAIEIATPPIP 1014

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG---IKGYEESVATIRGNNIRLA 998
            +    ++  +   E+ ++G Y S HPLD Y  +L  M        E+     +  +I L 
Sbjct: 1015 EGEQWSTIEKLNRERDLVGIYISAHPLDDYSIVLNSMCNTHCTEIEDKAELAKKEDIVLG 1074

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +V   + K T+ G   G+VT  +     E  FF
Sbjct: 1075 GIVTGVKSKFTKNGKPCGFVTIEDFEGSGELAFF 1108


>gi|315604412|ref|ZP_07879478.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral
            taxon 180 str. F0310]
 gi|315314118|gb|EFU62169.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral
            taxon 180 str. F0310]
          Length = 1180

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 372/1076 (34%), Positives = 576/1076 (53%), Gaps = 74/1076 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  HS YS+L+GA     + ++ A   QPAI +TD   LF A +F      AG++P
Sbjct: 4    SFVHLHNHSEYSMLDGAAKTKAMAEEAARLGQPAIGLTDHGYLFGAYDFYTNCVNAGVKP 63

Query: 70   IIGCQLDI-------DMQDNLK----MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            IIG +  +       D Q  L       +   +   +   + L+  + EG   L  L S 
Sbjct: 64   IIGLEAYVTPGTSRFDRQKVLWGEPWQRSDDVSAGGSYNHLTLVAYSTEGMLNLFRLGSY 123

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
                 Q  +  R     L +   EGLI+ TG  SG +           A       + +F
Sbjct: 124  ASTDGQFGKWPRADKELLSQF-HEGLIVFTGCPSGAVQTRLRLGQWDEAVAEAAELRDIF 182

Query: 179  G-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            G +  YV +  H G D  R    QV+ +A     PLVATN+S ++  +D +  D L+ + 
Sbjct: 183  GPENFYVEVMDH-GIDIERRTHQQVLDIAKLMNAPLVATNDSHYVKRDDRKIQDALLCIN 241

Query: 236  HSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSF---ILQVHAPI 291
              + ++  DR +   D +Y++   EM S++S+LP A ++T+EIA RC       +  A  
Sbjct: 242  SGSRINDPDRFKFDGDGYYIRPSEEMRSLWSELPGACDSTLEIAERCDVRFTTTKEGANY 301

Query: 292  LPRFIEKECDD----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
            +P F   + +D      KE E  LR++   G+                  R++  +E +V
Sbjct: 302  MPEFPVPDGEDKTSWFVKEVERGLRDRFPNGI--------------PDAVRKQAQYEEDV 347

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I  M F GYFL VAD+I WAK   I VGPGRGSGAGS+ AYA+ IT+++PL   L+FERF
Sbjct: 348  IISMGFPGYFLTVADYINWAKSQGIRVGPGRGSGAGSMVAYAMKITELNPLEHGLIFERF 407

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPDFD+DF + RRDEVI YV+ KYG +R++Q++T+G+++ K AL+D  R L  
Sbjct: 408  LNPERISMPDFDVDFDERRRDEVIAYVKRKYGEDRISQVVTYGTIKTKQALKDSARILGK 467

Query: 468  PYSQVDRLCKLIPNDPA---HPVSLQAIADD--------SRFREARLADPSVDRLLEISQ 516
             +   ++L K +P  PA     +S+  I D+        + FR+    +P    +++ + 
Sbjct: 468  DFKVGEQLTKALP--PAIMGKDISVHGIFDEKDKRYAEAAEFRKFYEENPDTHEVVDYAL 525

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             LEGL R    HA  +++    L+ ++P+ +  +    +TQF+    E  GL+K DFLGL
Sbjct: 526  GLEGLTRQWGVHACAVIMSSHTLTDIIPIMKRPQDGAIITQFDYPTCETLGLLKMDFLGL 585

Query: 577  KTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            + LT++  +L+ +A  G    DL  + FDD +TY LL    TLG+FQL+  GMR  L+ M
Sbjct: 586  RNLTVVSDALENIAINGKPDPDLDHLSFDDKKTYELLGRGETLGVFQLDGGGMRDLLKLM 645

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVI 689
            +PD  EDI A+ +LYRPGP+  ++   Y  RKNG+++I  IHP L +P+   L  T G+I
Sbjct: 646  KPDNFEDISAVGALYRPGPMGANSHTNYALRKNGRQEITPIHPELAEPLEEILGTTFGLI 705

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQIAQ L+GY+L +AD+LR+AMGKK KE +D+Q + F  G   NG S+     +
Sbjct: 706  VYQEQVMQIAQKLAGYTLGQADILRKAMGKKKKEVLDQQFKGFRQGMIDNGYSEESIKAL 765

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++++  F+ Y FNK+H+AAY ++SY TA++K +YP E++AA +T   DN ++   +  + 
Sbjct: 766  WDVVVPFSAYAFNKAHSAAYGLVSYWTAFLKANYPTEYMAALLTSTKDNKDRRALYLAEC 825

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDF 868
            R  +I ++PP VN    +F      I + L AI+ VG      I+   A+K  F S +DF
Sbjct: 826  RHMDITVLPPDVNASMGNFAPDGEAIRFGLNAIQNVGGPVVDAIVGTRAEKGRFASFQDF 885

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF- 927
              +V     N+R ++SL+ AGA D  G++R  LL   D        V++N      ++F 
Sbjct: 886  LDKVPQVVCNKRTIQSLIRAGAFDSMGHTRRALLARCDEAVDAIIDVKRNEAIGQFDLFG 945

Query: 928  AHEKGTFSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            A ++G+ S     + +      +   +   E+ +LG Y S HPL   +  L +   + YE
Sbjct: 946  ALDEGSSSGTGLAVDIPDLPEFDRKTKLAAEREMLGLYVSDHPLRGVEAALARH--QDYE 1003

Query: 985  ESVATIRGNN-------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +A + G+        +++A +V     K T++G+     T  + +   +  FFP
Sbjct: 1004 --IAQVVGSEGAMADRIVKIAGLVSGVTTKVTKQGNAWAIATIEDLSGSVDVLFFP 1057


>gi|300741276|ref|ZP_07071297.1| DNA polymerase III, alpha subunit [Rothia dentocariosa M567]
 gi|300380461|gb|EFJ77023.1| DNA polymerase III, alpha subunit [Rothia dentocariosa M567]
          Length = 1180

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 373/998 (37%), Positives = 542/998 (54%), Gaps = 55/998 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            F HL VH+ YS+L+GA  L ++          ++A +D   LF A +F ++A A  I+P
Sbjct: 5   GFAHLHVHTEYSMLDGAARLGDLFQYARELGMDSMATSDHGFLFGAFDFWRQAKANDIKP 64

Query: 70  IIGCQL------------DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
           IIG +              +   D  +    G   +     + +   T EG   L    S
Sbjct: 65  IIGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYT---HMTMWAETTEGMHNLFRASS 121

Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              L  Q  +  R+    LQ   ++GLI  TG  SG I         Q A      F+ +
Sbjct: 122 VASLEGQLYKP-RMDREVLQTY-SKGLIATTGCPSGEIQTRLRLGQYQEAVAAAAEFRDI 179

Query: 178 FG-DRLYVNLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
           FG D  Y  +  H G D  R  Q  + +LA    LP VATN+  +  +ED+ AH  L+ V
Sbjct: 180 FGKDNFYCEVMDH-GLDIERNVQADLHRLAKELNLPFVATNDLHYTRQEDHTAHAALLCV 238

Query: 235 AHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
              + ++   R +   D+ YL++  EM  IF D+P A ENT+EIA RC+      A  +P
Sbjct: 239 QSGSTLTDPKRFKFDADNFYLRSPEEMYQIFGDVPGACENTLEIAERCNVEFNTKANYMP 298

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            F   E ++    EE+    +   GL  R   G   K       R++ ++E+ VI  M F
Sbjct: 299 NFPVPEGEN----EESWFVKEVERGLHYRFPNGVPDK------VREQAEYEVGVITSMGF 348

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
            GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD++PL   L+FERFLNPDR+
Sbjct: 349 PGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLNPLNHDLIFERFLNPDRV 408

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
           SMPDFD+DF   RR EVI YV  KYG ++VAQI+TFG+++AK AL+D  R +  PYS  +
Sbjct: 409 SMPDFDVDFDDRRRAEVIDYVTEKYGEDKVAQIVTFGTIKAKQALKDASRVMDQPYSVGE 468

Query: 474 RLCKLIPNDP-AHPVSLQAI--ADDSRFREA----RLADPSVDRL----LEISQKLEGLY 522
           RL K +P D     ++L  +   +D R+ EA     L +  VD++     E ++ LEGL 
Sbjct: 469 RLTKAMPPDVMGKNIALANVYNPEDKRYSEAGDLRALIEDPVDKIYGEVFETAKGLEGLK 528

Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
           R    HAAG+++  + L+ ++P+ R       +TQF+    E  GLIK DFLGL+ LT++
Sbjct: 529 RQWGVHAAGVIMSSKNLTDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTII 588

Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
             +LD +   RG+++DL  +  DD E+Y LL    TLG+FQL+   MR  L+ M+P+  E
Sbjct: 589 SDALDNVKMNRGIEIDLENLEVDDKESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEFE 648

Query: 642 DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            I A+++LYRPGP+  ++   Y  RKNGK++I  IHP ++  L E    T G+I+YQEQV
Sbjct: 649 HISAVLALYRPGPMGANSHTNYALRKNGKQEIQPIHPELEEPLAEILDTTYGLIVYQEQV 708

Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           M IAQ ++ Y+L EAD+LRRAMGKK K E+DKQ E F  G   NG S+     ++++L  
Sbjct: 709 MAIAQKVANYTLGEADLLRRAMGKKKKAELDKQYEAFHDGMISNGYSEGAVKALWDILLP 768

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
           F+DY FNK+H AAY ++SY TA++K HYP E++AA +T   DN +K+  +  + R   I 
Sbjct: 769 FSDYAFNKAHTAAYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGIT 828

Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDS 874
           ++PP VN   + F      I + + AI+ VG      ++ A  +K  F+S  DF  +V  
Sbjct: 829 VLPPDVNESTLTFAPVGKDIRFGMGAIRNVGANVVDGMIAAREEKGHFESFNDFLKKVPL 888

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKG 932
              N+R +ESL+ AGA D   ++R  L    ++    A  V++       ++F       
Sbjct: 889 VVCNKRTIESLIKAGAFDELKHTRRSLSLVHESAVDAAVSVKRKEAAGQFDLFGSLGMDD 948

Query: 933 TFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPL 968
              D +++    + +   R     E+ +LG Y S HPL
Sbjct: 949 ALGDDLSVTVPDIPDWERREKLNFEREMLGLYVSDHPL 986


>gi|194467803|ref|ZP_03073789.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23]
 gi|194452656|gb|EDX41554.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23]
          Length = 1115

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 370/1039 (35%), Positives = 560/1039 (53%), Gaps = 71/1039 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L V SSYSLL+    +++++         A+A+TD N L+ A+EF   A  AGI+PI
Sbjct: 3    FTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L + + +    T+  K        +V L     GYQ L++L +    L Q ++  +
Sbjct: 63   LGLRLVVALNE----TDGTKL------DLVFLAKNQRGYQHLMDLST----LQQTRKDKK 108

Query: 131  ICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            + L+  Q   +  E  I++      P     F  S       +LT     GD   V L  
Sbjct: 109  VPLTVTQISPLLDELFIII------PPQSTVF--SVLAQPTSILTELANLGDDDSVLLGV 160

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +   D  +   + QL+    LPLV T+   +L+  D  A  VL A+     V  KD P +
Sbjct: 161  NSRLDDVQIDTLQQLSKQLSLPLVGTSPVDYLNANDLFASRVLQAI--DAGVELKD-PTI 217

Query: 249  TP----DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                   HYL ++ ++V  +    L  A + TVE+A  C+  LQ  AP+LP F  +    
Sbjct: 218  EAGRRGQHYLYSKEQVVQDYKAKGLSAAAQKTVEVATLCNVELQFRAPVLPHFKNQAGIS 277

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             Q+     LR+  + GL+ R     +A G   Q Y++RL  EL VI  M F  YFLIV D
Sbjct: 278  SQQY----LRSLCIQGLKKR----RVAPGKTIQQYQERLAMELKVIHEMGFDDYFLIVWD 329

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             + +A +  I   PGRGS AGS+ AYAL IT++DPL++ LLFERFLNP+R  MPD D+D 
Sbjct: 330  VMNFAHQQKITTDPGRGSAAGSLVAYALAITEVDPLQYDLLFERFLNPERAQMPDIDLDI 389

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RRDEV++YV  KYGH+RVAQIITFG+L AK  +RDV R   +P   + RL   +P+ 
Sbjct: 390  PDNRRDEVLQYVHQKYGHQRVAQIITFGTLAAKQVVRDVSRVFNLPRYDMQRLIDALPHG 449

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              H     A+ +  + +     +P    L++++Q+LEGL RH S HAAGIV+ ++PL ++
Sbjct: 450  -LHVTLKDALKESQQLKNLLDDNPKFRLLIQVAQQLEGLPRHYSIHAAGIVLSEQPLHEV 508

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+ +D    L +TQF    +E  GL+K DFLGLK L+++  +L  + Q     DL  I 
Sbjct: 509  VPL-QDGSDGLLMTQFAKDTVEALGLLKMDFLGLKNLSIMDNTLQMIRQEDPNFDLQKIN 567

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            F+D  T  L     T GIFQ ESSG+R  L  + P   EDI+A+ +LYRPGP++NI  + 
Sbjct: 568  FNDSLTLQLFQRGKTEGIFQFESSGIRNVLVNLHPTNFEDIVAVNALYRPGPMENIPHFT 627

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK GKEKI    P ++ +L  T G+++YQEQVMQ+A +++G++L EAD+LRRAM KK K
Sbjct: 628  ARKAGKEKIAYPAPSLEKILGPTYGILVYQEQVMQLASVMAGFTLGEADLLRRAMSKKKK 687

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              M+  + +FI+GA+++G S  +A  +FE + +FA+YGFN+SHA AY++++++ A++K H
Sbjct: 688  ATMEDMRTKFIAGATEHGYSAQVAHQVFEYIDRFANYGFNRSHAVAYSMMAFEMAYLKVH 747

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP  F  A M  E  N+EK+K+   DA+QF ++I  P +N     F + D  +Y+  +AI
Sbjct: 748  YPAAFFTALMNAET-NIEKLKRHVGDAKQFGVKISGPRINISESSFLLHDGTVYFGFSAI 806

Query: 843  KGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGV       I+E   +   F  L +F +R+  +   + ++E L+++GA D  GY+R ++
Sbjct: 807  KGVRRDFVAAILEERQENGKFTDLRNFITRIPERWQKQELIEPLIYSGAFDNMGYNRAEM 866

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRV 958
               +D + K    +E         +FA     F D          N      R   E   
Sbjct: 867  ---IDALPKLISGIE---------LFAG-FANFDDPTLQTAIDQRNEFPLLTRLTKENEY 913

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT----RKGSR 1014
            LG Y SGHP+  Y     ++G + +   +A +  N+   A ++V     KT    R+   
Sbjct: 914  LGVYLSGHPVTQY----YQLGQQLHATKIADLYPNS--EATIIVLTNHVKTIYTKREHRE 967

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + +V  ++     +   FP
Sbjct: 968  MAFVNGTDETGAVDITVFP 986


>gi|87306887|ref|ZP_01089033.1| DNA polymerase III alpha subunit [Blastopirellula marina DSM 3645]
 gi|87290260|gb|EAQ82148.1| DNA polymerase III alpha subunit [Blastopirellula marina DSM 3645]
          Length = 1181

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 353/983 (35%), Positives = 553/983 (56%), Gaps = 34/983 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL  H+ YSLL+GA S+  ++ +       A+AITD  NL  AL+F +   AA I P+
Sbjct: 6   FVHLHCHTHYSLLDGAGSIPRLVGRAKDHGMNALAITDHGNLHGALQFYRACKAAEINPV 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  I      + +   +    +   + LL     G++ L++L S  YL  +G     
Sbjct: 66  IGYEAYIAPGSRFEKSGSQRD---SNYHLTLLAQNKIGFRNLVKLSSAAYL--EGFYFKP 120

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSSQVAEKRLLT----FKKLFGDRLYVN 185
                L E  +EG+I L+G  S    +      S++  EK        F+++F DR ++ 
Sbjct: 121 RIDKELLEKYSEGIICLSGCVSSEFSKTILRGTSTEELEKEGANVASWFQRVFKDRYFIE 180

Query: 186 LQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
           +  + G D  R +    V +A    +PLVAT+++ ++ ++D EA DV++ +      +  
Sbjct: 181 IMNN-GLDIQRMQLEGAVDIANKIGVPLVATSDTHYVDQDDAEAQDVMLCINTGKFRTDT 239

Query: 244 DRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           +R R+  D + L+++ +M + F  L +A+  + EIA      L++     P +       
Sbjct: 240 NRMRMENDQFFLRSQEQMYADFPRLEDAVARSQEIADTVDLDLELGKRHFPTYTLPP--- 296

Query: 303 IQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +K  +  LR   + GL+ R    +  +  G  ++    RLD EL VI+R+ F  YFLIV
Sbjct: 297 -EKTADGYLRELCIQGLKERYEGNEEMLPGGELSEVVMARLDRELGVISRLGFPNYFLIV 355

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            DF+  A+K NIP    RGSG G++  YAL ++ + P+++ LLFERFL+ +R+  PD DI
Sbjct: 356 WDFVVEARKQNIPA-TARGSGVGAIVCYALYMSHVCPIKYDLLFERFLDENRLEAPDIDI 414

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DF ++RR  VIRYV++KYG + VAQI TFG+L A+AA++DVGRAL +P  +V+ +  ++P
Sbjct: 415 DFDKERRGLVIRYVKDKYGEDNVAQIGTFGTLAARAAIKDVGRALGLPLDRVNAITGMVP 474

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 +   AI      ++A   D     +L ++ K+EGL R+  THAA +VI DRPL+
Sbjct: 475 ETLGIKLK-TAIETSEELKQAYENDGEAREVLSLAMKIEGLARNVGTHAAAVVIADRPLT 533

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599
           + VP+ R    +  +TQ++M  +E AGL+K DFLGL+ LT+L+ ++D +  R G   D+ 
Sbjct: 534 EYVPLCRVTGKEDLITQWSMNDVEDAGLLKMDFLGLRNLTILRNAIDLIETREGKPFDIH 593

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            +P DD ET+ LL    T G+FQLES G+R  L  M+PD   DIIA  +LYRPGP++  +
Sbjct: 594 KMPLDDEETFALLRRGETKGVFQLESGGIRDLLRRMKPDSFLDIIATNALYRPGPLEGGM 653

Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           V  Y   KNG++     HP+++ +L+ET GV++YQEQVM+I   L    L++A    +A+
Sbjct: 654 VDEYIEVKNGRKAAEYKHPVLEKILEETNGVMVYQEQVMRILNQLGDIPLAKAYTCIKAI 713

Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KK +  + + +E+F+ GA + G++K  A   +E++ KFA YGFNKSH+ AYA+++YQTA
Sbjct: 714 SKKKESLIQQNREQFMIGAVEKGLTKKEAEEFWEMIVKFAGYGFNKSHSTAYALVAYQTA 773

Query: 778 WMKTHYPVEFLAASMTLEMDN-----VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
           ++KTHYP EF+AA ++ ++        + + +  +D+ +  I ++ P VNT  V F V D
Sbjct: 774 YLKTHYPKEFMAALLSGDISGRNFKTKDALVEHMEDSERMEIDVVAPDVNTSDVQFAVVD 833

Query: 833 NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +I ++L+AIKG G   A  I+ A   D PF  + DFC RVD+ + NR  +E+L+ AGA 
Sbjct: 834 GKIPFALSAIKGCGGGAAEAIVAARRKDGPFTDIFDFCERVDASQCNRAAIETLIKAGAF 893

Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVENS 948
           D    +R QL   LD   +       +R    +N+FA      G  S  + L      N 
Sbjct: 894 DSMSTNRAQLSSVLDKAIQSGAAALADRKAGQKNLFAAMEEASGAASKAVKLPDVEEWNE 953

Query: 949 SVRFENEQRVLGFYFSGHPLDVY 971
             +   E+ VLGF+ + HPL  Y
Sbjct: 954 REKLLYEKEVLGFFLTSHPLAEY 976


>gi|331696645|ref|YP_004332884.1| DNA polymerase III subunit alpha [Pseudonocardia dioxanivorans
            CB1190]
 gi|326951334|gb|AEA25031.1| DNA polymerase III, alpha subunit [Pseudonocardia dioxanivorans
            CB1190]
          Length = 1185

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 374/1075 (34%), Positives = 574/1075 (53%), Gaps = 72/1075 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ +S+L+GA  L+++  + A    PA+A+TD  N++ A EF +KA AAG++P
Sbjct: 8    SFVHLHTHTEFSMLDGAARLDDLFRESAKMGMPALAMTDHGNVYGAYEFWRKAKAAGVKP 67

Query: 70   IIGCQLDID---MQDNLKMTNQGKT-----PFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            IIG +  +      +  + T  G+T     P      + LL    EG   L  L S +  
Sbjct: 68   IIGMEGYLSPGSRHERKRATLGGQTVSDDNPGEMYTHMTLLAENTEGMHNLFRL-SSLAS 126

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180
            L+      R+    L+  G +G+I  TG  SG + R    +    A +    ++ +FG D
Sbjct: 127  LEGYYYKPRMDRELLETYG-KGIIATTGCPSGEVARLLQQDRYDDACQAASDYRDIFGRD 185

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  L  H    ++  +  + +L     LP +ATN+  +   ED + H+VL+ V     
Sbjct: 186  NFYCELMDHGIEIEKRVQEDLFRLKKELGLPGLATNDLHYTYAEDTKPHEVLLCVQTGKT 245

Query: 240  VSQKDRPRV-TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIE 297
            ++  +R +    D YLK+ +EM + +  + PEA +NT+ IA R          ++PR   
Sbjct: 246  LADPNRFKFDAQDFYLKSAAEMRAQWDPIHPEACDNTLLIAERVDVSFTEGQDLMPRAPV 305

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E +     EE+ L  +   GL  R   G        + YR++ ++EL+VI +M F GYF
Sbjct: 306  PEGE----TEESWLVKEVEKGLHRRFPNGV------TEQYRKQAEYELSVIIQMGFPGYF 355

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            ++ AD IQ AKK  I  GPGRGS AGS+ AY L ITD+DP++  L+FERFLNP+R+SMPD
Sbjct: 356  IVTADLIQHAKKVGIRCGPGRGSAAGSLVAYVLGITDLDPIKHKLIFERFLNPERISMPD 415

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQVDRL 475
             D+DF + RR E+IRY   KYG +R+AQIIT+ +++AKAA++D  R L  Q  YS  DR+
Sbjct: 416  IDMDFDERRRGEMIRYTTEKYGEDRIAQIITYSTIKAKAAIKDSARVLFGQPGYSVADRI 475

Query: 476  CKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             K +P              DP H    +  ++ +  R    ADP V  +++ ++ LEGL 
Sbjct: 476  TKAMPPAIMGKDIPLSGIFDPGH----KRYSEATEVRALYEADPQVREIIDTARGLEGLK 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++  +PL  ++P+ R       +TQF+M   E  GL+K DFLGL+ LT++
Sbjct: 532  RQWGVHAAGVIMSSKPLLDVIPIQRREADGAIITQFDMGACETLGLLKMDFLGLRNLTII 591

Query: 583  QKSLDFLAQRGVKVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
              +L+ +   G K  L +  +  DD +TY LL    TLG+FQL+   MR  L  M P   
Sbjct: 592  DDALENIELNG-KPPLVIEDVELDDPKTYDLLARGDTLGVFQLDGGPMRDLLRRMAPTEF 650

Query: 641  EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQ 694
            +DI A+ +LYRPGP+       Y +RKN ++++  IHP L +P+   L ET G+I+YQEQ
Sbjct: 651  DDISAVGALYRPGPMGANAHNDYADRKNKRQEVTPIHPELAEPLKDILGETYGLIVYQEQ 710

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VM IAQ L+GY+L +AD+LRRAMGKK KE +DK+ E F  G   +G S      ++++L 
Sbjct: 711  VMAIAQKLAGYTLGKADLLRRAMGKKKKEILDKEYEGFAQGMKDHGYSADAVKTLWDILL 770

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+DY FN++H+AAY V+SY TA++K +YP E++AA +T   D+ +K   +  + R+  I
Sbjct: 771  PFSDYAFNRAHSAAYGVVSYWTAYLKANYPAEYMAAVLTSVRDDKDKAAVYLAECRRMGI 830

Query: 815  QIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV 872
             ++PP VN    +F  VGD+ I + L AI+ VG      I+ A  +K  F    DF  +V
Sbjct: 831  TVLPPDVNESVRNFAPVGDD-IRFGLGAIRNVGFNVVDAIVAARKEKGAFSDFSDFLRKV 889

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-- 930
            D+   N++V+ESL+ AGA D  G+SR  LL    +        +K  +    ++F     
Sbjct: 890  DAVVCNKKVIESLIKAGAFDSLGHSRKGLLLVHADAIDAVMSTKKAASMGQFDLFGSMDG 949

Query: 931  ----------KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                       G F  K+  +++  ++   R   E+ +LG Y SGHPL   + +L     
Sbjct: 950  GDGDDSDPALAGIFDVKVPTDEWDTKH---RLAVEREMLGLYVSGHPLHGVEGVLAAKAD 1006

Query: 981  KGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +  +    G+   + +  ++    ++  + G         + A   E  FFP
Sbjct: 1007 TPIQNILDGTVGDGAQVTVGGILAGVNRRVNKNGEPWASAQIEDLAGGIEVLFFP 1061


>gi|283458361|ref|YP_003362984.1| DNA polymerase III subunit alpha [Rothia mucilaginosa DY-18]
 gi|283134399|dbj|BAI65164.1| DNA polymerase III, alpha subunit [Rothia mucilaginosa DY-18]
          Length = 1180

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 374/998 (37%), Positives = 548/998 (54%), Gaps = 57/998 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL VH+ YS+L+GA  L ++          ++A +D   LF A +F ++A A  I+PI
Sbjct: 6   FTHLHVHTEYSMLDGAARLGDLFTYAKELGMKSMATSDHGFLFGAFDFWRQAKAHDIKPI 65

Query: 71  IGCQL------------DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
           IG +              +   D  +    G   +     + +   T EG   L    S 
Sbjct: 66  IGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYT---HMTMWAETTEGMHNLFR-ASS 121

Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
           +  L+      R+    LQ   ++GLI  TG  SG +           A +    F+ +F
Sbjct: 122 IASLEGQLYKPRMDREVLQTY-SKGLIATTGCPSGEVQTRLRLGQFDEAVQAASEFRDIF 180

Query: 179 G-DRLYVNLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           G D  Y  +  H G D  R  Q  + +LA    LP VATN+  +  +ED+ AH  L+ V 
Sbjct: 181 GKDNFYCEVMDH-GLDIERNVQEDLHRLAKKLNLPFVATNDLHYTRQEDHTAHAALLCVQ 239

Query: 236 HSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
             + ++   R +   D+ YL++  EM ++F D+P A ENT+EIA RC+      A  +P 
Sbjct: 240 SGSTLTDPKRFKFDADNFYLRSAEEMYALFGDIPGACENTLEIAERCNVEFNTKANYMPN 299

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
           F   E ++    EE+    +   GL  R   G   K       R++ ++E+ VI  M F 
Sbjct: 300 FPVPEGEN----EESWFVKEVEKGLHYRFPDGVPDK------VRKQAEYEVGVITSMGFP 349

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
           GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD++PL   L+FERFLNPDR+S
Sbjct: 350 GYFLVVADFINWAKRNGIRVGPGRGSGAGSMVAYAMRITDLNPLDHDLIFERFLNPDRVS 409

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           MPDFD+DF   RR EVI YV  KYG E+VAQI+TFG+++AK AL+D  R +  PYS  +R
Sbjct: 410 MPDFDVDFDDRRRGEVIDYVTEKYGEEKVAQIVTFGTIKAKQALKDASRVMDQPYSVGER 469

Query: 475 LCKLIPNDP-AHPVSLQAI--ADDSRFREA----RLADPSVDRL----LEISQKLEGLYR 523
           L K +P D     ++L  +   +D R+ EA     L D  VD++     E ++ LEGL R
Sbjct: 470 LTKAMPPDVMGKNIALANVYNEEDKRYAEAADLRALIDDPVDKIYGQVFETAKGLEGLKR 529

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
               HAAG+++  + L  ++P+ R       +TQF+    E  GLIK DFLGL+ LT++ 
Sbjct: 530 QWGVHAAGVIMSSKDLVDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTIIS 589

Query: 584 KSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            +++ + A RG+ +DL  +P DD E+Y LL    TLG+FQL+   MR  L+ M+P+  E 
Sbjct: 590 DAVENIKANRGIDLDLESLPLDDPESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEFEH 649

Query: 643 IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVM 696
           I A+++LYRPGP+  ++   Y  RKNGK++I  IHP ++  LK+    T G+I+YQEQVM
Sbjct: 650 ISAVLALYRPGPMGANSHTNYALRKNGKQEIEPIHPELEEPLKDILDTTYGLIVYQEQVM 709

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            IAQ ++ Y+L EAD+LRRAMGKK K E+DKQ   F  G   NG S+     ++++L  F
Sbjct: 710 AIAQKVANYTLGEADLLRRAMGKKKKAELDKQYATFHDGMISNGYSEGAIKALWDILLPF 769

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
           +DY FNK+H AAY ++SY TA++K HYP E++AA +T   DN +K+  +  + R   I +
Sbjct: 770 SDYAFNKAHTAAYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGITV 829

Query: 817 MPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDS 874
           + P VN   + F  VGD+ I + + AI+ VG      ++ A  +K  ++S  DF  +V  
Sbjct: 830 LAPDVNESTLTFAPVGDD-IRFGMGAIRNVGANVVEGMIAAREEKGRYESFNDFLKKVPL 888

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKG 932
           +  N+R +ESL+ AGA D  G++R  L    +     A  V++       ++F       
Sbjct: 889 QVCNKRTIESLIKAGAFDDLGHTRRSLSLIHEAAVDAAVAVKRKEAAGQFDLFGSLGMDD 948

Query: 933 TFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPL 968
              D++T+    V     R     E+ +LG Y S HPL
Sbjct: 949 ALGDELTVTIPDVPEWDRREKLNFERDMLGLYVSDHPL 986


>gi|255034240|ref|YP_003084861.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053]
 gi|254946996|gb|ACT91696.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053]
          Length = 1216

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 357/1074 (33%), Positives = 570/1074 (53%), Gaps = 77/1074 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL  H+ +SLL+GA  +  +  K   D  PA+AITD  N+F   EF  +    GI+PI
Sbjct: 3    FSHLHCHTQFSLLDGAADIKKLFKKAKEDNMPAVAITDHGNMFGVFEFVAEGNKQGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSV 129
            +GC+  +    +++   + K     V    LL++  E GY+ L+++ S  ++     +  
Sbjct: 63   VGCEFYVVEDRHVRQFTKDKK---DVRHHQLLLAKDEIGYKNLVKMCSLGFIEGMYGKYP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    + +   +GLI  T      I +       + AE+    +  LFGD  YV LQRH
Sbjct: 120  RIDKDLIVQY-HKGLIATTCCIGAIIPKTIIRQGEEAAEREFKWWLDLFGDDFYVELQRH 178

Query: 190  RGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS------- 241
               D+Y  ++V ++ A  + + ++ +N+S ++  +D+ AHD+L+ +      S       
Sbjct: 179  DIRDQYIVNEVLIKFARKYNVKIICSNDSHYVDRDDWNAHDILLCINTGDKQSTPSAKDF 238

Query: 242  --QKDRPR------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
              +K  P+           Y K  SEM+ +F+DLPE+L+NT EI  +   +      +LP
Sbjct: 239  DDEKGIPKGSRFAFYNDQFYFKKTSEMLQLFNDLPESLDNTNEIVDKIKTLDLRKDILLP 298

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEV--------RLAQGAIAKGYH--AQDYRQRLDF 343
             F     D+ +    +E+  K     +V         L      K Y     +  +RL+F
Sbjct: 299  NF--PIPDEFKTHTLSEMVGKKELTADVLNQWEYLRHLTFEGARKKYDVVTPEIEERLNF 356

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL  I  M F GYFLIVADFI   +K  + +GPGRGS AGS  AYA+ IT+IDP+++ LL
Sbjct: 357  ELQTIRNMGFPGYFLIVADFIDAGRKMGVFIGPGRGSAAGSAVAYAIGITNIDPVKYDLL 416

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNPDR+SMPD D DF  D R +VI YV  KYG+ +VAQI+T+G++ AK+A++DV R
Sbjct: 417  FERFLNPDRISMPDIDTDFDDDGRQKVIDYVVKKYGYNQVAQIVTYGTMAAKSAIKDVAR 476

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSL-----------------QAIADDS-----RFREA 501
             + +P    + L KL+P+ P + ++L                 + I+ D      R R  
Sbjct: 477  VMDLPLPDANMLAKLVPDKPTYNMTLNRIFTAPLEGEGSLMKKEGISPDELENVKRMRAI 536

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
             + +     +L+ +++LEG  R+   HAAGI+I    L++++P+     SD  +TQ+  K
Sbjct: 537  AVGNDLQASVLQEARRLEGTVRNTGIHAAGIIIAPSDLTEIIPVSTSKDSDFLITQYQGK 596

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620
             IE AG+IK DFLGL+ L++++++L  +    G  + +  +P DD + + L     T  I
Sbjct: 597  IIEDAGVIKMDFLGLRNLSIIKEALRMIKNNYGHDIVIDDVPLDDPKVFELFQRGETNAI 656

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ ES GM++ +  + PD  E +IA+ +LYRPGPI  I  +  RKNG+E++    P ++ 
Sbjct: 657  FQFESDGMKKYMRDLIPDRFEHLIAMNALYRPGPIAYIPNFIRRKNGQEEVTYDLPELEE 716

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
             L +T G+ +YQEQVM ++Q L+G++  +AD LR+AMGKK  E ++K K  F+ G ++ G
Sbjct: 717  YLADTYGITVYQEQVMLLSQKLAGFTKGQADTLRKAMGKKQIETLNKLKGDFMKGGTEKG 776

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            +       I+     FA Y FNKSH+  YA ++YQTA++K HYP E++AA +T  + +++
Sbjct: 777  LDAKKLEKIWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYPAEYMAAVLTSSLGSID 836

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD 859
            KI  F ++ +  ++ ++ P +N     F V     I + LA +KG G      I+E  A 
Sbjct: 837  KITFFMEECKNLSLPVLGPDINESERQFSVNKKGEIRFGLAGVKGSGDAAVESIIEERAK 896

Query: 860  -KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS--------LDNIQ 909
              PF  + DF +RV+ + +N++ LESL +AGA DCF  Y R Q   +        ++ + 
Sbjct: 897  GGPFKDVFDFMTRVNLRTVNKKTLESLAYAGAFDCFTDYHRAQYFTAEQGENGTFIEKLI 956

Query: 910  KYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +YA      +++   ++F    + G+   K         +   +   EQ V+GFY SGHP
Sbjct: 957  RYANNYHAEKSSAQASLFGMLGDSGSTLAKPKAADIGPWDDLAKLRYEQEVVGFYISGHP 1016

Query: 968  LDVYKP--------ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            LD ++          L K+      E      G +I +A +V S Q++ ++ GS
Sbjct: 1017 LDTFRAELDNFCNCTLDKVMEINEGERAPKYYGKDINVAGIVTSAQERMSKNGS 1070


>gi|284035464|ref|YP_003385394.1| DNA polymerase III subunit alpha [Spirosoma linguale DSM 74]
 gi|283814757|gb|ADB36595.1| DNA polymerase III, alpha subunit [Spirosoma linguale DSM 74]
          Length = 1205

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 367/1083 (33%), Positives = 568/1083 (52%), Gaps = 105/1083 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL  H+ YSLL+G   +  ++ K  AD  PA+AITD  N+F   EF  +A   GI+PI
Sbjct: 3    FSHLHCHTQYSLLDGQADIKKLIKKAKADNMPAVAITDHGNMFGVFEFVAEASKQGIKPI 62

Query: 71   IGCQLDIDMQDNLK--MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            +GC+  + ++D+ K   T + K         +LL   A+GY+ L +L S  Y+     + 
Sbjct: 63   VGCEFYV-VEDHHKKQFTKEQKD---VRYHQLLLAKNAQGYKNLAKLCSLGYMEGLYGKY 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    + +   EGLI  T      + +       +  E     +   FG+  YV LQR
Sbjct: 119  PRVTKELIDQY-KEGLIASTCCIGASVPKTILKKGEEAGEIEFKWWLDRFGEDYYVELQR 177

Query: 189  HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV---AHSTVVSQKD 244
            H   D+ + ++V ++ A  + + ++A+N+S ++ ++D+ AHD+L+ V      +  S KD
Sbjct: 178  HEIPDQIKANEVLIKFARKYNVKIIASNDSHYVDQDDWVAHDILLCVNTNEKQSTPSMKD 237

Query: 245  ------RPRVT------PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
                   P+ T         Y KN  EM ++F DLPEA++NT EI  +   +      +L
Sbjct: 238  FSDDDVMPKNTRFAFFSDQFYFKNTQEMTTLFKDLPEAIDNTNEIVGKVETLKLKRDIML 297

Query: 293  PRF-----IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
            P F      ++  DD+  + E  LR+    G + R          H Q   +RLDFEL  
Sbjct: 298  PNFPIPKEFQQHTDDVLNQWEY-LRHLTYEGAKERYVDILP----HIQ---ERLDFELFT 349

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I  M F+GYFLIVADFI+  +   + +GPGRGS AGS  AY   IT+IDP+++ LLFERF
Sbjct: 350  IRTMGFAGYFLIVADFIKAGRDLGVMIGPGRGSAAGSAVAYCTGITNIDPIKYDLLFERF 409

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNPDR SMPD D DF  + R +VI YV  KYG  +VAQI+T+G++ +K++++DV R + +
Sbjct: 410  LNPDRKSMPDIDTDFDDEGRQKVIDYVVQKYGKAQVAQIVTYGTMASKSSIKDVARVMDL 469

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADD--------------------SRFREARLADPS 507
            P    + + KL+P+ P + ++L+ I +D                     R R     D S
Sbjct: 470  PLQDANAVVKLVPDKPTYNMTLKRIFEDPIDGPGGLSSVIQPDEVENVKRMRALEAGDKS 529

Query: 508  ------------VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
                        V  +L+ ++KLEG  R+   HAAGI+I    LS +VP+     ++L +
Sbjct: 530  AAQAMRIVDFEKVSAVLKQARKLEGTVRNTGLHAAGIIIAPSDLSDIVPVSTSKDTNLII 589

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTT 614
            TQ+  K IE AG+IK DFLGL+ LT++++ L  + Q   V + +  IP DD ETY L   
Sbjct: 590  TQYEGKVIEDAGVIKMDFLGLRNLTIIKECLRLIKQNHDVTIAIDDIPLDDEETYKLFQR 649

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
              T  +FQ ES GM++ ++ ++PD   D+IA+ +LYRPGPI  I  Y NRK+G+E++   
Sbjct: 650  GETNAVFQFESDGMKKHMKDLKPDRFGDLIAMNALYRPGPIAYIPNYINRKHGREEVKYD 709

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
             P ++  L +T G+ +YQEQ+M ++Q L  ++  +ADVLR+AMGKK K  +DK K +F+ 
Sbjct: 710  MPEMEEYLADTYGITVYQEQLMLLSQKLGNFTKGDADVLRKAMGKKDKATLDKMKGKFMD 769

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            G + N +   +   ++     FA Y FNKSH+  YA ++YQTA++K HY  E++AA +T 
Sbjct: 770  GCAANNLPLKVCEKVWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYTSEYMAAVLTS 829

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHI 853
             +  ++KI  F ++ +   + ++ P VN     F V     I + L  IKG G      I
Sbjct: 830  CLGTIDKITFFMEECKNLGLPLLGPDVNESERFFGVNKKGEIRFGLGGIKGAGDAAVEAI 889

Query: 854  MEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS------- 904
            +E   A  P+  + DF  RV+ + +N++  ESL +AGA D    Y R Q  +        
Sbjct: 890  IEERKAGGPYKDIFDFAVRVNLRTVNKKTWESLAYAGAFDSIDEYHRAQYFEMAEGDTSP 949

Query: 905  -LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE---------NSSVRFEN 954
             LD + +YA        N H    A ++  F   +  E              N   + + 
Sbjct: 950  FLDKVIRYA-------NNYHAEKAAAQQSLFGAMMNGEPMIARPKPPIVTEWNQIEKLKY 1002

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYE----ESVATIRGNNIRLAAMVVSKQQKKTR 1010
            E+ V+GFY +GHPLD +     K+ + G+     + +   R   I++A +V S Q K  +
Sbjct: 1003 EKDVVGFYITGHPLDEF-----KLELDGFCNCTLDKIYETRQPEIKVAGIVSSMQTKIAK 1057

Query: 1011 KGS 1013
             G+
Sbjct: 1058 NGN 1060


>gi|88856521|ref|ZP_01131178.1| DNA polymerase III subunit alpha [marine actinobacterium PHSC20C1]
 gi|88814175|gb|EAR24040.1| DNA polymerase III subunit alpha [marine actinobacterium PHSC20C1]
          Length = 1174

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 386/1067 (36%), Positives = 582/1067 (54%), Gaps = 57/1067 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            + + SFVHL VHS YS+L+GA  +  +LD       PAIAITD  N+F A +F + A A 
Sbjct: 5    DNNDSFVHLHVHSEYSMLDGAARVGPLLDAAVEQGMPAIAITDHGNMFGAYDFWKSATAR 64

Query: 66   GIQPIIGCQLDID----MQDNLKMTNQGK-------TPFPTVPSIVLLVSTAEGYQRLIE 114
            GI+PIIG +  I       D  ++   G                + LL    EG   L  
Sbjct: 65   GIKPIIGTEAYITPGTARGDKTRVRWGGSHQTRDDVGGSGAYTHMTLLSQNNEGMHNLFR 124

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            + S+  + +      R+    L +  ++G+I  TG   G +           A +    F
Sbjct: 125  MSSKASI-EGFYFKPRMDRELLSQY-SKGIIATTGCVGGEVQTKLRLGLYDEARQAAADF 182

Query: 175  KKLFG-DRLYVNLQRHRGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            + +FG +  +  +  H G D  R +   +++LA   ++PL+ATN+  +    D  AH  L
Sbjct: 183  QDIFGKENFFAEIMDH-GIDIERRTILDLIKLAKELDMPLLATNDLHYTHSHDATAHAAL 241

Query: 232  MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + V  ++ +   +R +  + + YLK+ +EM S+F + PEA +NT+ IA RC    +    
Sbjct: 242  LCVQSASTLDDPNRFKFDSNEFYLKSAAEMRSLFREHPEACDNTLLIAERCEVSFEGR-D 300

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVA-GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
            ++PRF   E      E E     K VA G+  R    A +  + AQ       +E++VI 
Sbjct: 301  LMPRFPVPEG-----ETEATWFEKEVAKGMNKRF-NNAPSDAHLAQ-----AKYEVDVIQ 349

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFL+VADFI+WAK   I VGPGRGS AGS+ +YA+ IT++DPL   L+FERFLN
Sbjct: 350  QMGFPGYFLVVADFIEWAKAQGIRVGPGRGSAAGSMASYAVGITELDPLAHGLIFERFLN 409

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPD D+DF   RR EVIRYV  KYG +RVAQI+T+G+++AK AL+D  R L MPY
Sbjct: 410  PERVSMPDVDVDFDDRRRGEVIRYVTEKYGDDRVAQIVTYGTIKAKQALKDSARVLGMPY 469

Query: 470  SQVDRLCKLIPNDPA---HPVSLQAI--ADDSRFREAR------LADPSVDRLLEISQKL 518
            S  ++L K +P  PA     +SL  +   D  R++EA         D    ++ + +  L
Sbjct: 470  SVGEKLTKAMP--PAIMGKDISLHDVRNKDAPRYKEAADIRGIVDTDAEAAKVFDTAVGL 527

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R    HAAG+V+   PL  ++P+ R       +TQF+   +E  GLIK DFLGL+ 
Sbjct: 528  EGLKRQWGVHAAGVVLSAEPLLDVLPIMRREDDGAIITQFDQPPLESLGLIKMDFLGLRN 587

Query: 579  LTLLQKSLDFL-AQRGVKVDLSLIPFD-DHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            LT+++ +L  + A  G  + +  +  D D +TY LL    TLG+FQL+   MR  L+ ++
Sbjct: 588  LTVIEDALTMIKANTGSPLVIEDLDLDADQKTYDLLARGDTLGVFQLDGGPMRALLKQLK 647

Query: 637  PDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVII 690
            P   EDI A+++LYRPGP  +++   Y  RKNG E I +IHP ++  LKE    T G+I+
Sbjct: 648  PTNFEDISAVIALYRPGPMGMNSHTKYALRKNGLEDIDAIHPELEEPLKEILGTTFGLIV 707

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVM +AQ ++G++L +ADVLRRAMGKK KEE+DKQ   F SG  +NG SK     ++
Sbjct: 708  YQEQVMSVAQKVAGFTLGQADVLRRAMGKKKKEELDKQFIGFESGMLENGFSKEAVKVLW 767

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            E L  FADY FNK+H+A Y V+SY TA++K +YP E++AA +T   D+ +K+  +  + R
Sbjct: 768  ETLMPFADYAFNKAHSAGYGVLSYWTAYLKANYPAEYMAALLTSVGDSKDKLGMYLSECR 827

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFC 869
            +  I+++ P VN   V+F      I + L A++ VG +    I+ A  +K  F+S  D+ 
Sbjct: 828  RMGIKVLAPDVNESTVNFTAVSGDIRFGLGAVRNVGASVVEQIVRARTEKGRFESFHDYL 887

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             +V  +  N+R +ESL+ +GA D  G +R  LL+  ++    A  +++N  N   ++F  
Sbjct: 888  RKVSIQVANKRTVESLIKSGAFDSLGATRRGLLEIHEDACDSAVSLKRNEANGQVDLFGG 947

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA- 988
                  D   + +    +   +   E+ +LG Y S HPL   +  L K       E ++ 
Sbjct: 948  IFDFDGDDDGVPERPEWSKRDKLAFEREMLGLYVSDHPLSGLELQLAKHQDATITEVLSG 1007

Query: 989  --TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                 G+++ +A +V S Q +  R  G++ G VT  +   E    F 
Sbjct: 1008 DVVADGDHVSIAGLVTSVQHRVARNSGNQYGIVTVEDFGGEISVMFL 1054


>gi|325962960|ref|YP_004240866.1| DNA-directed DNA polymerase III PolC [Arthrobacter phenanthrenivorans
            Sphe3]
 gi|323469047|gb|ADX72732.1| DNA-directed DNA polymerase III PolC [Arthrobacter phenanthrenivorans
            Sphe3]
          Length = 1185

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 377/1052 (35%), Positives = 550/1052 (52%), Gaps = 76/1052 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  L  + D+      PA+A TD   LF A +F +KA   GI+P
Sbjct: 7    SFVHLHTHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWKKATDKGIKP 66

Query: 70   IIGCQLDI----------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
            IIG +  +                + Q    ++  G     +   + LL     G + L 
Sbjct: 67   IIGVEAYVTPGTARGDKSRVRWGEEHQRKDDISGGG-----SYTHMTLLSYNNAGMRNLF 121

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
               S   L     +  R+    L    +EGLI  TG  SG I         + A +    
Sbjct: 122  RASSIASLDAVFGKWPRLDRELLNTY-SEGLIATTGCPSGEIQTRLRLGQYREALEAAAE 180

Query: 174  FKKLFGDRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            F+ +FG   Y       G D  R     +++LA    LPLVATN+  +  E D +AH+ L
Sbjct: 181  FRDIFGAENYFCELMDHGLDIERRVTGDLLRLAKDLNLPLVATNDLHYTHEHDAKAHEAL 240

Query: 232  MAVAHSTVVSQKDRPR-------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
            +A+   + + +                +YLK+  EM  +F D P+A +NT+ IA RC   
Sbjct: 241  LAIQSGSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMRELFRDHPDACDNTLLIAERCEVS 300

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                A  +PRF     +D    E + L  +   GLE R   G         + R + D+E
Sbjct: 301  FNTGANYMPRFPCPPGED----ETSWLVKEVAKGLEYRYPGGV------PDNVRAQADYE 350

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L VI  M F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPLR  L+F
Sbjct: 351  LGVITSMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLRHGLIF 410

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNPDR+SMPDFD+DF   RR EVI YV  KYG ERVA I+T+G+++ K AL+D  R 
Sbjct: 411  ERFLNPDRVSMPDFDVDFDDRRRPEVIDYVTRKYGDERVAMIVTYGTIKTKQALKDSSRV 470

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-----------DSRFREARLADPSVDRLLE 513
            L  P+S  ++L K +P  PA       +AD              FR+    DP   ++ E
Sbjct: 471  LGYPFSMGEQLTKALP--PAVMAKDIPLADIQNPEAKRYGEAGDFRQLISTDPEAAKVFE 528

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             +  +EGL R    HAAG+++   P+  ++P+ R ++    +TQF+    E  GLIK DF
Sbjct: 529  TALGIEGLKRQWGVHAAGVIMSSDPIIDVIPIMRRIQDGQVITQFDYPTCEGLGLIKMDF 588

Query: 574  LGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL+ LT++  +L+ +   RG+ +DL  +  DD  +Y LL    TLG+FQL+   MR  L
Sbjct: 589  LGLRNLTIISDALENIKLNRGIDLDLENLELDDAPSYELLARGDTLGVFQLDGGPMRSLL 648

Query: 633  EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQ 686
            + M+PD  EDI A+++LYRPGP+  +    Y  RKNG + ++ IHP ++  L E    T 
Sbjct: 649  KLMKPDNFEDISAVLALYRPGPMGANAHTDYALRKNGIQPVIPIHPELEEPLSEILGGTY 708

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+I+YQEQVM +AQ L+GYSL +AD+LRRAMGKK K E+DKQ   F  G   NG S    
Sbjct: 709  GLIVYQEQVMAVAQKLAGYSLGQADILRRAMGKKKKSELDKQFAGFSQGMQDNGYSMEAV 768

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              ++++L  F+DY FNK+H+AAY VISY TA++K HY  E++AA +T   D+ +K   + 
Sbjct: 769  KTLWDILLPFSDYAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDKSAIYL 828

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSL 865
             + R+  I ++PP VN   ++F    N I + + AI+ VG      ++ A  ++  F S 
Sbjct: 829  NECRRMGITVLPPDVNESALNFTPVGNDIRFGMGAIRNVGVNVVEAMVAARESEGAFTSF 888

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
            +D+  +V +   N+R +ESL+ +GA D  G+ R  L    +        +++N      +
Sbjct: 889  KDYLMKVPAVVCNKRTIESLIKSGAFDSLGHHRRALAMIHEEAIDSVITLKRNEAIGQFD 948

Query: 926  IFA---HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
            +FA     +   S  I +          +   E+ +LG Y S HPL   + +L +     
Sbjct: 949  LFAGFEEAESESSLSIEIPDLPEWEKKDKLSFERDMLGLYVSDHPLQGLEGLLSQHA--- 1005

Query: 983  YEESVATIRGNN-------IRLAAMVVSKQQK 1007
             E S+ ++ G +       I +A M+ S  ++
Sbjct: 1006 -EMSITSVLGEDGPQDGAIITIAGMITSLSRR 1036


>gi|256423694|ref|YP_003124347.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
 gi|256038602|gb|ACU62146.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
          Length = 1214

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 363/1102 (32%), Positives = 569/1102 (51%), Gaps = 109/1102 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA----- 65
            F HL VH+ YSLL+GA  + ++  K  A  QPA+AITD  N+F A +F  +A        
Sbjct: 3    FSHLHVHTQYSLLDGAADIKSLYKKAMASNQPALAITDHGNMFGAFQFVAEAYNNRLNPE 62

Query: 66   -------GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS-----IVLLVSTAEGYQRLI 113
                    ++PI+GC+  +       + N+ K  F           VLL    EGY+ LI
Sbjct: 63   DPKDKRLKVKPIVGCEFYV-------VENRFKRAFTREEKDIRNHQVLLAKNDEGYRNLI 115

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +L S  Y+     +  RI    + +   +GLI  T      + RA      +  E+    
Sbjct: 116  KLCSLGYIEGLYGKYPRIDKELILQY-HKGLIATTCCLGASVPRAILKKGEEAGEEEFKW 174

Query: 174  FKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +  +FG+  YV LQRH   ++ + ++ +++ A  H + ++A+N+S ++ + D  AHD+L+
Sbjct: 175  WLDIFGEDYYVELQRHGIPEQEKVNESLIKFASKHNVKIIASNDSHYVDQADANAHDILL 234

Query: 233  AVAHSTVVSQKDRPRVTPDH---------------YLKNRSEMVSIFSDLPEALENTVEI 277
             +      S       + D                Y K   EM ++F DLP+A++NT EI
Sbjct: 235  CINTGEKKSTPTMKDFSDDDVSMKNKRFAFYNDQFYFKTTEEMTALFQDLPQAIDNTNEI 294

Query: 278  ARRCSF------ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
              +         IL  + PI P F+          ++  LR+  + G   + A+      
Sbjct: 295  VDKVELLDLKRDILLPNFPIPPPFLT---------QDQYLRHITMEGAHKKYAEVT---- 341

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
                +  +R++FEL+VI  M F+GYFLIV+DFI+  +   + +GPGRGS AGS  AY + 
Sbjct: 342  ---AEVEERINFELSVIENMGFAGYFLIVSDFIKAGRDLGVFIGPGRGSAAGSAVAYCIG 398

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT+IDP++++LLFERFLNP+R SMPD D DF  + R +VI YV NKYG  +VAQIIT+G+
Sbjct: 399  ITNIDPIKYNLLFERFLNPERKSMPDIDTDFDDEGRQKVIDYVVNKYGKNQVAQIITYGT 458

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA---------------------HPVSLQ 490
            + AK +++DV R + +P  + + L K++P+ P                        +  +
Sbjct: 459  MAAKMSIKDVARVMDLPLVESNMLAKMVPDKPGIQLDRIFNAPIDEGEKSLAEKEGLGPE 518

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
             + +  R RE          +L  +  LEG  R+   HAAGI+I  + L  L+P+     
Sbjct: 519  DLENVKRLRELIKGQDLQGEVLREACVLEGSVRNTGIHAAGIIIAPKDLYDLIPVSTAKD 578

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
            SDL VTQF    IE AG+IK DFLGLKTLT+++ +L+ +    G+ + +  IP DD +TY
Sbjct: 579  SDLLVTQFEGSIIESAGVIKMDFLGLKTLTIIKGALELIRTNHGIDISIDDIPLDDAKTY 638

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T   FQ ES+GM++ L  ++PD  +D+IA+ +LYRPGP++ I ++  RK+G E
Sbjct: 639  ELYQKGETNATFQFESAGMQKYLRELKPDRFDDLIAMNALYRPGPLEYIPLFIRRKHGLE 698

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            + V     ++  L +T G+ +YQEQVM ++Q L+ +S  +ADVLR+AMGKK K  +DK K
Sbjct: 699  ETVYDLAEMEEYLNDTYGITVYQEQVMLLSQKLANFSKGDADVLRKAMGKKQKAVLDKMK 758

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            ++F+ G + NG    +   ++     FA Y FNKSH+  YA ++YQTA++K HYP E++A
Sbjct: 759  KQFMEGCAANGHDLKVCDKVWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYPAEYMA 818

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTT 848
            A +     N+EKI  F ++A++  I ++PP VN     F V    +I + LA +KGVG  
Sbjct: 819  AVLN-NASNIEKITFFMEEAKRMGIDVLPPDVNESFKGFAVNKQGQIRFGLAGLKGVGEA 877

Query: 849  TARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQ--- 903
               +I+E       + ++ +   RV+ + +N++ LE+L  +GA DCF    R Q      
Sbjct: 878  AVENILEERQKGSNYKNIFEMIKRVNQRAVNKKSLEALAMSGAFDCFPELHRAQYFHKPD 937

Query: 904  -----SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
                  LD I K+ Q V         ++F  +     +   +         ++  NE+ V
Sbjct: 938  NDNTTGLDKIVKFGQQVSAGAATTMSSLFGADDMPEVEPPKIPPCDPWPLILKLNNEREV 997

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESV------------ATIRGNNIRLAAMVVSKQQ 1006
             G Y SGHPLD Y+   R   +   +E V             + R  N RLA  V   Q+
Sbjct: 998  TGIYISGHPLDDYRFESRYYNMNTVQELVEYQADLQAPGNAKSGRERNFRLAVYVTGAQE 1057

Query: 1007 KKTRKGSRIGWVTFSEPAKEYE 1028
            + +R   + G +T  + + ++E
Sbjct: 1058 RISRNNRQFGIMTIEDYSGKFE 1079


>gi|288800747|ref|ZP_06406204.1| DNA polymerase III, alpha subunit [Prevotella sp. oral taxon 299 str.
            F0039]
 gi|288332208|gb|EFC70689.1| DNA polymerase III, alpha subunit [Prevotella sp. oral taxon 299 str.
            F0039]
          Length = 1236

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 373/1101 (33%), Positives = 588/1101 (53%), Gaps = 94/1101 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-------SQKAC 63
            FVHL VH+ YS+L+G  ++  ++DK   +    +AITD  N+F   EF       + K  
Sbjct: 4    FVHLHVHTYYSILDGQSNIQKLVDKAINNGMRGLAITDHGNMFGIKEFYNYCNKVNGKRK 63

Query: 64   AAGI---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
              G+   +PI+GC++ +    N K +   +        +++L    +GY+ LI+LVSR +
Sbjct: 64   EEGLPPFKPILGCEMYV--ARNKKESKIKENGDMGGKHLIVLAKNFQGYKNLIKLVSRSW 121

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            + D      R     L+    EGLI+ +   +G +         + A +    FK++FGD
Sbjct: 122  V-DGFYMRPRTDHEDLERY-HEGLIVCSACIAGEVPSKVLKGDYEGAREAARWFKRVFGD 179

Query: 181  RLYVNLQRHRGYDRYRESQ-------------VVQLAYTHELPLVATNNSLFLSEEDYEA 227
              Y+ LQRH   D  + +              ++++A   ++ +V TN+  F+ ++D EA
Sbjct: 180  DYYLELQRHEVKDPSQRANRQTYPLQQKANKALLEIAKELDIKVVCTNDVHFIEKDDAEA 239

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            HD L+ ++ +  ++  +R   T   + K++ EM  +F DLPEA++NT EI  +       
Sbjct: 240  HDHLICLSTNKDLNDPNRLLYTKQEWFKSKEEMNEVFGDLPEAMQNTCEILDKIELYSID 299

Query: 288  HAPILPRF-------IEKEC------DDIQKE-------------EENELRNKAVAGLEV 321
            HAPI+P +        E++       +D+ KE             EE + + + + G+E 
Sbjct: 300  HAPIMPFYPIPEDFGTEEDLRSSISEEDLFKEFTSDENGQNPLPLEEGKKKIEKLGGIEK 359

Query: 322  ------------RLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                        +LA     K Y      +  +R+ FEL+++  M F GYFLIV DFI  
Sbjct: 360  LYRVKFEADYLGKLAYDGAKKLYGEPLTDEVDERIKFELHIMKTMGFPGYFLIVQDFINT 419

Query: 367  AKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            A+    + VGPGRGS AGSV AY L IT IDP+++ LLFERFLNPDR+S+PD D DF  D
Sbjct: 420  ARNELGVMVGPGRGSAAGSVVAYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDDD 479

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             R  V+ +V+NKYGHE  A IIT+G++  K +L+DV R  ++P  Q + LCK IP+   +
Sbjct: 480  GRGLVLEWVENKYGHENCAHIITYGTMATKNSLKDVARVERVPLDQANYLCKSIPDKLPN 539

Query: 486  PVSLQ---AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             + +    A+A     ++A  + D  V   ++ ++KLEG  R    HA G +I   P+S 
Sbjct: 540  DLKMNLTNAVASIPELKQAEESPDEKVRNTIKYAKKLEGTVRGTGVHACGFIICRDPISD 599

Query: 542  LVPMY-----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVK 595
             VP+       D    L  TQ++   IE  GLIK DFLGLKTL++L++++D +   +G+K
Sbjct: 600  WVPISIAEDKTDPGHKLRCTQYDGHVIEDTGLIKMDFLGLKTLSILKEAVDNIQFTKGIK 659

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +DL  IP DD  TY L +   T+G FQ ES GM++ L  +QP   ED+IA+ +LYRPGP+
Sbjct: 660  IDLDNIPIDDALTYELYSAGKTIGTFQFESPGMQKHLRSLQPTVFEDLIAMNALYRPGPM 719

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK    KI    P ++  LK+T G+ +YQEQVM +A+ L+G++  ++D LR+
Sbjct: 720  DYIPDFIERKKDPSKIQYDIPCMEKYLKDTYGITVYQEQVMLLARQLAGFTRGQSDTLRK 779

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK+  +MDK +  F  G  KNG  + +   I+E   KFA Y FNKSHA  Y+ +S+Q
Sbjct: 780  AMGKKLIAQMDKLETLFYEGGVKNGHDQKVLNKIWEDWKKFASYAFNKSHATCYSWVSFQ 839

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNR 834
            TA++K HYP E++AA ++  ++N+ ++ KF  + R   I+++ P VN     F    D  
Sbjct: 840  TAYLKAHYPAEYMAAVLSRNLNNITEVIKFIDECRALGIKVLGPDVNESRQKFSANKDGI 899

Query: 835  IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L+AIKG+G   A+ I+E  + + P+ ++ DF  RV+   +N++ LE L  +GALD 
Sbjct: 900  IRFGLSAIKGMGDAAAQSIVEERTKNGPYKNIYDFIERVNINAVNKKALELLALSGALDG 959

Query: 894  FG-YSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            F    R Q L         +D + +Y Q  +  +     ++F  +        T  ++  
Sbjct: 960  FKELKREQYLTKNIKGEPFIDLLVRYGQRYQSEQNQSQNSLFGGDDAAEIPHPTPPEWE- 1018

Query: 946  ENSSVRFENEQR-VLGFYFSGHPLDVYKPILRKMGIKGYEE---SVATIRGNNIRLAAMV 1001
            E S +   N +R  +G Y S HPLD +  ++  +      E   ++A     N+ L  +V
Sbjct: 1019 EWSHIELLNRERDCIGIYLSAHPLDEFSMVINNLCNANCNELADNLALASKENVALGGIV 1078

Query: 1002 VSKQQKKTRKGSRIGWVTFSE 1022
               + + T+KG   G+VT  +
Sbjct: 1079 TLSEARTTKKGLPCGFVTIED 1099


>gi|283783561|ref|YP_003374315.1| DNA polymerase III subunit alpha [Gardnerella vaginalis 409-05]
 gi|283441761|gb|ADB14227.1| DNA polymerase III subunit alpha [Gardnerella vaginalis 409-05]
          Length = 1188

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 365/1075 (33%), Positives = 575/1075 (53%), Gaps = 69/1075 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  H+ YSLL+GA  + +++ +      PA+AITD  N+  A E    A  AGI+P
Sbjct: 7    NFVHLHNHTHYSLLDGASKIPDLVARAKELGMPAVAITDHGNMHGAYEMWSTAVKAGIKP 66

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPT-------------VPSIVLLVSTAEGYQRLIELV 116
            IIG +  +  +   +  ++ +  + T             +  + L      G   L++  
Sbjct: 67   IIGIEAYVTPETARQ--DKSRVHWGTEDQRADDVSGGGLITHMTLWAENDTGLTNLLKAS 124

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S   L  +  +  R+    L    ++G+I  +G  SG I         + A +    F+ 
Sbjct: 125  SVANLEGRVMRYPRMDKDVLSTY-SKGVIASSGCPSGIIQTRLRLGQFKEALRAAGEFQD 183

Query: 177  LFG-DRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            +FG D  ++ L  H      R ++ ++++A     PL+ATN+  ++ EED EA D ++ +
Sbjct: 184  IFGRDNFFIELMNHGLSIETRVTKDLLEIAKKLNAPLLATNDLHYVHEEDREAQDAMLCI 243

Query: 235  AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ--VHAPI 291
               + +   DR +     +YLK+  +M  +F + PEA +NT+EIARRC+ +         
Sbjct: 244  NSGSRLDDPDRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGEDGAF 303

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +P+F   +C +   E    L+ K   GLE R             +  ++ D+E  VI +M
Sbjct: 304  MPQF---DCPEGWDETSLFLK-KVEEGLERRYNNNI------PMEVLKQADYECGVICQM 353

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            +F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++  L+FERFLNP+
Sbjct: 354  QFCGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLNPE 413

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+S+PD D+DF  D R +V+ YV  KYG ++VAQ + +G+++ K AL+D  R +   +S 
Sbjct: 414  RVSLPDIDVDFDPDGRAKVLEYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEFSV 473

Query: 472  VDRLCKLIPNDPA---HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEG 520
             +++ K++P  PA     +SL  I D+          FRE    DP   R+ E ++ +EG
Sbjct: 474  GEKITKVLP--PAKNGKDMSLHDIFDEKSKRYAEAREFREMYDTDPDTHRITEEAKGIEG 531

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTL 579
            L R    HA   ++G  P++   P+    R+D  + T F     E  GL+K DFLGL  L
Sbjct: 532  LIRQTGVHACATIMGSEPITNTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNL 589

Query: 580  TLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T+++ +L  +   G   +D + IP DD  TY LL+   TLG+FQL+S GMR  L  ++PD
Sbjct: 590  TVIRDTLRNIENNGKDPIDYTKIPLDDKATYQLLSRGDTLGVFQLDSDGMRALLRTLKPD 649

Query: 639  CIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLI-DPM---LKETQGVIIYQ 692
               DI AL++LYRPGP  +D+   Y  RKNG + I+ IHP + +P+   L ET G+I+YQ
Sbjct: 650  NFNDISALIALYRPGPMDMDSHTNYAKRKNGLQDIIPIHPEVAEPLKEVLDETYGLIVYQ 709

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV   A++L+GYSL +ADVLRRAMGKK  E + K++  F  G   +G S+  A  ++++
Sbjct: 710  EQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKAHGYSEEAAQAVWDV 769

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +  E  N +K   +  +AR+ 
Sbjct: 770  LVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRM 829

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKP-FDSLEDFCS 870
             IQ++ P VN   +++    + + + L AI+ VG      I+ E   ++  F +  DF  
Sbjct: 830  GIQVLQPDVNESVLEYSAVGDVVRFGLGAIRNVGDKAVNDIITEREGERGRFVNFMDFVQ 889

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-- 928
            RV    LNRR++ESL+ AGA D    +R  L Q  D        +++ +     ++FA  
Sbjct: 890  RVPISALNRRLVESLIKAGAFDSIDSNRRALFQICDPAIDSVIALKRKQAEGQFDLFADL 949

Query: 929  -------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKM 978
                    + G    +IT+      +   +   E+ +LG Y S HPL     +   LR+M
Sbjct: 950  DSSSDSDDDNGMGDMQITVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLADLREM 1009

Query: 979  GIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             I    +   T+  G  + +A +V S  ++ +RKG+    VT  +     +  FF
Sbjct: 1010 SIAQLIDRARTMSDGQQVTIAGLVTSVDRRVSRKGNAWAIVTVEDMESSIQCMFF 1064


>gi|224476792|ref|YP_002634398.1| DNA polymerase III subunit alpha [Staphylococcus carnosus subsp.
            carnosus TM300]
 gi|222421399|emb|CAL28213.1| DNA polymerase III alpha subunit [Staphylococcus carnosus subsp.
            carnosus TM300]
          Length = 1067

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 357/1026 (34%), Positives = 561/1026 (54%), Gaps = 84/1026 (8%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL +H++Y LL  +L + +I+ K   +    +AITDTN L +  +F   +  AGI+P+ G
Sbjct: 4    HLNIHTAYDLLNSSLKVPDIIQKAVQEGYETLAITDTNVLHAVPQFYDASIKAGIKPVFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              + I + D L           T    VLL     G + L +L S + +    ++     
Sbjct: 64   --MTIYLSDGL-----------TELETVLLAKNEAGLKSLYQLSSAIKV----QEKYATP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH--R 190
            + WL+                           +  +  ++ FK +  ++L  NL  H  +
Sbjct: 107  IEWLK---------------------------KYQDNLVIIFKNVTSEQL--NLVHHFEK 137

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D Y + Q    A   +L +V    + +L+ ED +    L A+  +  +   +      
Sbjct: 138  HPDLYVDHQSSGAAERLDLNMVYMQEARYLNAEDADTLSALNAIKDNQTIDLVNTGSNHH 197

Query: 251  DH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             H Y +N    + + +D+   +ENT  +A  C+  ++ H P+LP++ +   +   K    
Sbjct: 198  AHFYTQNEVNDLGLSADV---IENTETLAELCTTEIEYHQPLLPQY-QTPDNSSSKTYLW 253

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L  +++  +E   +Q           YR+RL++E N+I  M +  YFLIV+D I +AK 
Sbjct: 254  HLLEQSLEKMEFDQSQ-----------YRERLEYEFNIITEMGYEDYFLIVSDLIHYAKT 302

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            +N+ VGPGRGS AGS+ +Y L IT IDPLR++LLFERFLNP+R++MPD DIDF   RR++
Sbjct: 303  HNVMVGPGRGSSAGSLVSYLLNITTIDPLRYNLLFERFLNPERVTMPDIDIDFEDTRREK 362

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YVQ KYG   V+ I+TFG L AKA  RDVGR +    S +  + KLIP+     ++L
Sbjct: 363  VIQYVQEKYGDYHVSGIVTFGHLLAKAVARDVGRIMGFEESTLSEISKLIPSKLG--ITL 420

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                 +  F+E    +   ++  E+S+KLEGL RH STHAAGI+I DRPL + VP++   
Sbjct: 421  SEAYQNESFKEFVHRNHRHEKWFELSKKLEGLPRHTSTHAAGIIINDRPLYEHVPLFMGD 480

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET 608
               L  TQ+ M   EK GL+K DFLGLK L+++ + +D + +   V +D+  IPFDD + 
Sbjct: 481  TGLL--TQWTMTEDEKLGLLKIDFLGLKNLSIIHQIIDQVKKDLNVSIDIEAIPFDDPKV 538

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + +L+   T G+FQLES G+RQAL+ +QP   EDI+A+ SLYRPGP++ I  Y  R++  
Sbjct: 539  FEMLSRGDTTGLFQLESDGVRQALKRLQPQHFEDIVAMTSLYRPGPMEEIPTYITRRHVP 598

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             K+  +HP ++P+LK T GVIIYQEQ+MQIA   +G+S  EAD+LRRAM KK +  ++ +
Sbjct: 599  SKVQYLHPDLEPILKNTYGVIIYQEQIMQIASKFAGFSYGEADILRRAMSKKNRAMLENE 658

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ F+ GA++NG S+ ++  IF+L+ KFADYGF ++HA +Y+ I+Y  A++K HYP  F 
Sbjct: 659  RQHFVDGANQNGYSEQLSKQIFDLILKFADYGFPRAHAVSYSKIAYTMAYLKVHYPNYFY 718

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A  +T  + N +K +    +A+  N++I+PP +N     ++     IY SL A+KGVG  
Sbjct: 719  ANILTNSIGNDKKTELMVTEAKSMNLKILPPDINESHWYYRATSKGIYLSLGAVKGVGYQ 778

Query: 849  TARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            + + I+E   +   +    D   R+ ++   R++LESL+  GA D F  +R  LL +LD 
Sbjct: 779  SVKAIVEERYENGKYKDFFDLTRRLPNRVKTRKLLESLILVGAFDQFNENRATLLSTLDQ 838

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +   A  VE++        F   K ++  K  L    + +    FE E   LGFY S HP
Sbjct: 839  VLDGASNVEQDELLFE---FVTPKESYQAKEELPDKVLSD----FEKEH--LGFYISKHP 889

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            ++      + +GI  Y+ S A    NN  +   +    + +T+ G  + +VT ++  K  
Sbjct: 890  VEKIFENKQLLGI--YKLSNAK---NNQPILVQIDKMNRIRTKNGQPMAFVTLNDGTKTL 944

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 945  DGVIFP 950


>gi|297243791|ref|ZP_06927721.1| DNA polymerase III, alpha subunit [Gardnerella vaginalis AMD]
 gi|296888212|gb|EFH26954.1| DNA polymerase III, alpha subunit [Gardnerella vaginalis AMD]
          Length = 1188

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 365/1075 (33%), Positives = 575/1075 (53%), Gaps = 69/1075 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  H+ YSLL+GA  + +++ +      PA+AITD  N+  A E    A  AGI+P
Sbjct: 7    NFVHLHNHTHYSLLDGASKIPDLVARAKELGMPAVAITDHGNMHGAYEMWSTAVKAGIKP 66

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPT-------------VPSIVLLVSTAEGYQRLIELV 116
            IIG +  +  +   +  ++ +  + T             +  + L      G   L++  
Sbjct: 67   IIGIEAYVTPETARQ--DKSRVHWGTEDQRADDVSGGGLITHMTLWAENDTGLTNLLKAS 124

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S   L  +  +  R+    L    ++G+I  +G  SG I         + A +    F+ 
Sbjct: 125  SVANLEGRVMRYPRMDKDVLSTY-SKGVIASSGCPSGIIQTRLRLGQFKEALRAAGEFQD 183

Query: 177  LFG-DRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            +FG D  ++ L  H      R ++ ++++A     PL+ATN+  ++ EED EA D ++ +
Sbjct: 184  IFGRDNFFIELMNHGLSIETRVTKDLLEIAKKLNAPLLATNDLHYVHEEDREAQDAMLCI 243

Query: 235  AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ--VHAPI 291
               + +   DR +     +YLK+  +M  +F + PEA +NT+EIARRC+ +         
Sbjct: 244  NSGSRLDDPDRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGEDGAF 303

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +P+F   +C +   E    L+ K   GLE R             +  ++ D+E  VI +M
Sbjct: 304  MPQF---DCPEGWDETSLFLK-KVEEGLERRYNNNI------PMEVLKQADYECGVICQM 353

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            +F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++  L+FERFLNP+
Sbjct: 354  QFCGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLNPE 413

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+S+PD D+DF  D R +V+ YV  KYG ++VAQ + +G+++ K AL+D  R +   +S 
Sbjct: 414  RVSLPDIDVDFDPDGRAKVLEYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEFSV 473

Query: 472  VDRLCKLIPNDPA---HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEG 520
             +++ K++P  PA     +SL  I D+          FRE    DP   R+ E ++ +EG
Sbjct: 474  GEKITKVLP--PAKNGKDMSLHDIFDEKSKRYAEAREFREMYDTDPDTHRITEEAKGIEG 531

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTL 579
            L R    HA   ++G  P++   P+    R+D  + T F     E  GL+K DFLGL  L
Sbjct: 532  LIRQTGVHACATIMGSEPITNTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNL 589

Query: 580  TLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T+++ +L  +   G   +D + IP DD  TY LL+   TLG+FQL+S GMR  L  ++PD
Sbjct: 590  TVIRDTLRNIENNGKDPIDYTKIPLDDKATYQLLSRGDTLGVFQLDSDGMRALLRTLKPD 649

Query: 639  CIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLI-DPM---LKETQGVIIYQ 692
               DI AL++LYRPGP  +D+   Y  RKNG + I+ IHP + +P+   L ET G+I+YQ
Sbjct: 650  NFNDISALIALYRPGPMDMDSHTNYAKRKNGLQDIIPIHPEVAEPLKEVLDETYGLIVYQ 709

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV   A++L+GYSL +ADVLRRAMGKK  E + K++  F  G   +G S+  A  ++++
Sbjct: 710  EQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKAHGYSEEAAQAVWDV 769

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +  E  N +K   +  +AR+ 
Sbjct: 770  LVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRM 829

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKP-FDSLEDFCS 870
             IQ++ P VN   +++    + + + L AI+ VG      I+ E   ++  F +  DF  
Sbjct: 830  GIQVLQPDVNESVLEYSAVGDVVRFGLGAIRNVGDKAVNDIITEREGERGRFVNFMDFVQ 889

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-- 928
            RV    LNRR++ESL+ AGA D    +R  L Q  D        +++ +     ++FA  
Sbjct: 890  RVPISALNRRLVESLIKAGAFDSIDSNRRALFQICDPAIDSVIALKRKQAEGQFDLFADL 949

Query: 929  -------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKM 978
                    + G    +IT+      +   +   E+ +LG Y S HPL     +   LR+M
Sbjct: 950  DSSSDSDDDNGMGDMQITVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLADLREM 1009

Query: 979  GIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             I    +   T+  G  + +A +V S  ++ +RKG+    VT  +     +  FF
Sbjct: 1010 SIAQLIDRARTMSDGQQVTIAGLVTSVDRRVSRKGNAWAIVTVEDMESSIQCMFF 1064


>gi|325300436|ref|YP_004260353.1| DNA polymerase III, alpha subunit [Bacteroides salanitronis DSM
            18170]
 gi|324319989|gb|ADY37880.1| DNA polymerase III, alpha subunit [Bacteroides salanitronis DSM
            18170]
          Length = 1265

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 377/1143 (32%), Positives = 602/1143 (52%), Gaps = 129/1143 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YS+L+G  S++ ++DK  A+    IAITD  ++F   EF            
Sbjct: 4    FVHLHVHTQYSILDGQASISRLVDKAMANGMKGIAITDHGDMFGIKEFFNYVNKKNGGTN 63

Query: 61   ---------------------------KACAAGIQ--------PIIGCQLDIDMQDNLKM 85
                                        AC   I+        PIIGC++ +      ++
Sbjct: 64   GEIKDLKKKVAALESGKVESENPEADIAACKEQIEVAKKKLFKPIIGCEMYVARN---RL 120

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGL 144
            T++   P      +++L    +GY  LI+LVS+ +   QG     R   + L++   EGL
Sbjct: 121  TDKNGKPDQGGYHLIVLAKNLKGYHNLIKLVSKAWT--QGFYMRPRTDRAELEKY-HEGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYRES 198
            I+ +    G + R         AE+ +  +K LFG+  Y+ LQRH+       ++ Y+  
Sbjct: 178  IVCSACLGGEVPRRITAGQFAEAEEAIQWYKNLFGEDYYLELQRHKATVPRANHETYKLQ 237

Query: 199  QVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +VV     + A  +++ LV TN+  F+ EE+ EAHD L+ ++ S  +   +R   T   +
Sbjct: 238  EVVNKKLIEYARKYDIKLVCTNDVHFVDEENAEAHDRLICLSTSKDLDDPNRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297
            +K R EM +IFSD+PEAL NT E+  +  F    HAPI+P                R+ E
Sbjct: 298  MKTREEMNAIFSDVPEALVNTCEVCDKVEFYSIDHAPIMPTFSIPEEFGTEEEYRKRYSE 357

Query: 298  KECDDIQKEEEN------ELRNKA----VAGLE------------VRLAQGAIAKGYHAQ 335
            K+  D   ++EN      E   KA    + G E             +LA     + Y A 
Sbjct: 358  KDLFDEFTQDENGNVVMSEADAKAKIERLGGYEKLYRIKLEADYLAKLAYEGARRRYGAD 417

Query: 336  ---DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
               + ++R+ FEL+++  M F GYFLIV DFI  A+   ++ VGPGRGS AGS  AY L 
Sbjct: 418  LTDEVKERIKFELHIMKTMGFPGYFLIVQDFIAAARNQLDVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA IIT+G+
Sbjct: 478  ITQIDPIKYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRLCKLIP+  P   ++L  AIA     + A ++ DP +
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLCKLIPDKIPDKKLNLPNAIAYVPELQAAEVSSDPVL 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               ++ ++ LEG  R+   HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
            + GLIK DFLGLKTL++++++++ +   +G+++++  IP DD  TY L     T+G FQ 
Sbjct: 658  ETGLIKMDFLGLKTLSIIKEAIENIRHSKGIELNIDEIPIDDPATYQLYGEGQTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  ++P   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELEPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPIMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGKKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                 I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA+M+  + N+ +I 
Sbjct: 838  KTLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAATMSRNVSNITEIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIM-EASAD 859
            K   + +   I+++ P VN   + F V   GD  I + L AIKGVG +  + I+ E   +
Sbjct: 898  KLMDECKAMGIRVLGPDVNESSMKFSVNYHGD--IRFGLGAIKGVGESAVQSILVEREKN 955

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKY 911
              F ++ DF  RV+    NR+ +E+L  AG  D F G  R             ++ + +Y
Sbjct: 956  GVFKNIFDFVQRVNLSACNRKNIENLALAGGFDSFSGIKREDFFVKNAKDETFVEILVRY 1015

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
                + ++     ++F  E+        +      +   R   E+ ++G Y S HPLD Y
Sbjct: 1016 GNRYQVDKAAAVNSLFGGEQAVEIATPEIVHAPAWSDLERLNKERELVGIYLSAHPLDEY 1075

Query: 972  KPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              IL  +      +   +  ++ +++ L  +V   ++  TR G   G     + +   + 
Sbjct: 1076 AVILENVCNARMSQLADLTPLQNHDLTLGGVVTGVREGYTRTGKPYGVAKLEDYSGTADF 1135

Query: 1030 NFF 1032
             FF
Sbjct: 1136 AFF 1138


>gi|256827611|ref|YP_003151570.1| DNA-directed DNA polymerase III PolC [Cryptobacterium curtum DSM
            15641]
 gi|256583754|gb|ACU94888.1| DNA-directed DNA polymerase III PolC [Cryptobacterium curtum DSM
            15641]
          Length = 1165

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 363/1059 (34%), Positives = 565/1059 (53%), Gaps = 56/1059 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---- 65
            +FVHL  H+ YSLL+GA  + +++ + A    PA+AITD + + S +   + AC +    
Sbjct: 2    AFVHLHNHTEYSLLDGATHVKDMVQRAADLGMPAVAITD-HGVMSGVPELEDACISVEKE 60

Query: 66   ---GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                ++PI GC++     D LK   +GK   P +  ++LL  T EGY  L++LVS  ++ 
Sbjct: 61   TGIKVKPIFGCEIYFTTDDELK--REGK---PRLYHMILLAKTNEGYHNLVKLVSESHV- 114

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GD 180
            D      R   + L+   ++GLI  +   +G I R       + A         LF  GD
Sbjct: 115  DNFYYKPRTTFAMLKRY-SKGLIGTSACIAGIIPRLLDLGQYEDAMSWARKLAGLFEPGD 173

Query: 181  RLYVNLQRHR-----GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
              Y+ LQ        G+ ++    Q+ Q+A    L  +ATN+  +L+ +D +A D+++ +
Sbjct: 174  -FYLELQDQGVVTDLGHTQHELNVQLSQIAKECGLKTIATNDFHYLTHDDAKAQDIILCI 232

Query: 235  AHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
               + V   +R R + D  Y+K   EM +  +D PEA +NTVEIA +C+ +L+  + ILP
Sbjct: 233  GTGSQVDDTNRMRFSNDQFYMKTEEEMRAALADFPEACDNTVEIAEKCNVVLERDS-ILP 291

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR----QRLDFELNVIA 349
            RF   E     + E +  R +  +GL  R  +G +         R    +R + E  VI 
Sbjct: 292  RFPVPE----GETEVSWFRKQCESGLVRRYGEGKVQTFQELAQVRPEVAERYEHEAQVII 347

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +  F  YFLIV ++I WAK + I VGPGRGS AGS+  YA+ ITD+DPL + LLFERFL+
Sbjct: 348  KQGFPAYFLIVQEYIMWAKDHGIGVGPGRGSAAGSIVTYAMGITDLDPLPYGLLFERFLS 407

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
             +R+ MPD D+DF    R +VI +V+  YG + ++ +ITFG LQAK A+RD  R L  PY
Sbjct: 408  EERVEMPDIDVDFDDQHRQDVIDHVREFYGEDHISGVITFGKLQAKNAVRDAARVLGYPY 467

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
               DRLCKLI N+    +  QA+  +   + A  ++     +++ +Q +EG  R    HA
Sbjct: 468  GVGDRLCKLIGNELGITIQ-QALETNPDLKAAYESEADAQAVIDAAQSIEGHVRGEGVHA 526

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               +I   PL+  VP+ RD +    +TQ++  +  + GL+K DFLGL+TL ++ ++ D +
Sbjct: 527  CATIICRDPLADHVPVKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLGVISRACDNV 586

Query: 590  -AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             A+ G+ +D S I  +D E + L+      G+FQ+E +        M+P    DI+A ++
Sbjct: 587  KARHGIDIDPSAISLEDPEAFKLMCGGNMDGLFQVEGNLYVTLFARMKPRRFSDIVASIA 646

Query: 649  LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            L RPGP+ N  V  Y +R +GK ++V     + P+L+ET G I+YQEQ+MQI+  +SG+S
Sbjct: 647  LNRPGPLQNGFVDDYVDRVSGKSQVVYYDDRLRPILEETYGTIVYQEQLMQISMRMSGFS 706

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
              +AD LR+AMGKK  E M   +E +  GA  NG S  ++  I+    KFA Y FNKSH+
Sbjct: 707  AGKADKLRKAMGKKKLEVMKALEEDWNQGAVDNGYSLEVSKKIWSDAEKFAQYAFNKSHS 766

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A YAV+  +TA++K HYP EF+AA ++  + N +K+  +        IQ++PP +N+  V
Sbjct: 767  ACYAVLVMRTAYLKAHYPNEFMAAVLSSYLGNNDKLIHYIASCAASGIQVLPPDINSSNV 826

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            +F   D  + + LA ++GVG      I+ E     P+ SL DF  R+DS+  NR+ LE+L
Sbjct: 827  EFTPTDEGVRFGLAGVRGVGEKVVEEIIAERDTHGPYTSLHDFVHRLDSRCYNRKTLEAL 886

Query: 886  VFAGALDCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIF----AHEKGTFSDKIT 939
            + AGA D  GY+R QL+  +D   + + A   +K+R     ++F      +   FS++  
Sbjct: 887  IKAGAFDSTGYTRKQLMYFIDETPLLESAAKRQKDRNCGQTSMFDLFGDSDDSGFSEETP 946

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG------IKGYEESVATIRGN 993
                   +       E+ +L  Y S HPL  Y  +L K+       +   E  +      
Sbjct: 947  APDGVEWDKRTLLAFEKDILKIYVSDHPLRPYAGLLSKLSKFRLGDLADREHDI-----K 1001

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            N     M+ S   K T+KG+R+   T  +     EA  F
Sbjct: 1002 NATFVGMISSVVTKLTKKGTRMATFTLEDTTGHVEAVCF 1040


>gi|323356540|ref|YP_004222936.1| DNA polymerase III, alpha subunit [Microbacterium testaceum StLB037]
 gi|323272911|dbj|BAJ73056.1| DNA polymerase III, alpha subunit [Microbacterium testaceum StLB037]
          Length = 1154

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 379/1052 (36%), Positives = 556/1052 (52%), Gaps = 79/1052 (7%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L+GA  +  ++ +      PAIA+TD  N F+A EF + A  AGI+PIIG +  +    
Sbjct: 1    MLDGAARIGPMVQEAVKQGMPAIAVTDHGNTFAAYEFYKTAKDAGIKPIIGIEAYVTPGT 60

Query: 82   NLKMTNQGKTPFPTVPS-----------IVLLVSTAEGYQRLIELVSRMYLLDQGKQ-SV 129
            +     + +   P   S           + LL  T EG   L  L S+  +  +G     
Sbjct: 61   HRSDKTRVRWGSPEQQSDDVSGSGAYTHMTLLSETTEGMHNLFRLSSKASM--EGYYFKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    LQ   + GLI  TG  SG +         + A      F+ +FG   Y      
Sbjct: 119  RMDRELLQTY-SRGLIATTGCPSGEVQTRLRLGQYEAARAAAAEFQDIFGKENYFAEIMD 177

Query: 190  RGY--DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             G   +R   S +++++    +PL+ TN+  +  + D  +H  L+ V   + +    R +
Sbjct: 178  HGLSIERRVMSDLLKISKDLNIPLLGTNDLHYTHQHDATSHAALLCVQSGSTLDDPKRFK 237

Query: 248  VTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI----EKECDD 302
               D +Y+K+ +EM  +F D PEA +NT+ IA RC       A  +PRF     E E   
Sbjct: 238  FDGDGYYVKSPAEMRQVFRDNPEACDNTLLIAERCDVEFDTSANYMPRFPVPPGETEGSW 297

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            + KE EN L+++   G+                  R++ ++E +VI +M F GYFL+VAD
Sbjct: 298  MIKEVENGLQDRYPGGI--------------PDAVRKQAEYETDVILQMGFPGYFLVVAD 343

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPL+  L+FERFLNPDR+SMPDFD+DF
Sbjct: 344  FINWAKNNGIRVGPGRGSGAGSMVAYAMKITDLDPLQHGLIFERFLNPDRVSMPDFDVDF 403

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN- 481
               RR EVI+YV  KYG ERVAQI+T+G+++AK AL+D GR L  P+S  D+L K +P  
Sbjct: 404  DDRRRGEVIQYVTEKYGDERVAQIVTYGTIKAKQALKDAGRVLGFPFSMGDKLTKAMPPA 463

Query: 482  ------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
                        +P HP   +A      FR     DP    + + +  LE L R    HA
Sbjct: 464  VMGKDMPLDGMFNPEHPRYKEA----GEFRTLIETDPEAKTVFDTALGLENLKRQWGVHA 519

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            AG+++   PL  ++P+ R  +    VTQF+    E  GLIK DFLGL+ LT++  +LD +
Sbjct: 520  AGVIMSSEPLIDIIPIMRREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIINDALDNI 579

Query: 590  -AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             A RG  + L  +  DD  +Y LL    TLG+FQL+   MR  L  M+PD  EDI A+++
Sbjct: 580  EANRGHPLVLEDLALDDAASYELLARGDTLGVFQLDGGPMRSLLRLMRPDNFEDISAVLA 639

Query: 649  LYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQVMQIAQLL 702
            LYRPGP  +++ + Y  RKN +++I  IHP L +P+   L  T G+I+YQEQVM +AQ +
Sbjct: 640  LYRPGPMGVNSHINYALRKNKQQEIEPIHPELEEPLADILDTTYGLIVYQEQVMAVAQRV 699

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +GY+L +AD+LRRAMGKK K E+DKQKE F  G ++ G        ++++L  FADY FN
Sbjct: 700  AGYTLGQADLLRRAMGKKKKSELDKQKEIFFGGMTERGYGDVAQQTLWKVLESFADYAFN 759

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            K+H AAY ++SY TA++K HYP E++AA +T   D+ +K+  +  + R+  I+++PP VN
Sbjct: 760  KAHTAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDSKDKMAVYLNECRRMGIRVLPPDVN 819

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                 F      I + L A++ VG      I+ A  D  + S  DF ++V     N+R +
Sbjct: 820  ESIRFFAAVGEDIRFGLGAVRNVGANVVDGIVAARQDAKYTSFHDFLAKVPMHVANKRTV 879

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            ESL+ AGA D  G +R  LL+  ++  + A   ++   N        E G   D +  E 
Sbjct: 880  ESLIKAGAFDTLGSTRRALLEIHEDACEGAVSDKRREANG-------EVGFDFDSLWDEP 932

Query: 943  FSVENSSVRFEN--------EQRVLGFYFSGHPLDVYKPILRK---MGIKGYEESVATIR 991
              V     R E         E+ +LG Y S HPL   +  L K     I     S     
Sbjct: 933  QQVTKVPERPEWTKKDKLAFEREMLGLYVSDHPLAGLEVPLAKHASTSIHDLLSSEDVQD 992

Query: 992  GNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSE 1022
            G+ + +A ++ S Q +  ++ G+  G VT  +
Sbjct: 993  GDQVTVAGLLTSVQHRVAKQSGNPYGMVTVED 1024


>gi|299535454|ref|ZP_07048776.1| DNA polymerase III subunit alpha [Lysinibacillus fusiformis ZC1]
 gi|298729215|gb|EFI69768.1| DNA polymerase III subunit alpha [Lysinibacillus fusiformis ZC1]
          Length = 1027

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 358/1030 (34%), Positives = 554/1030 (53%), Gaps = 52/1030 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            + V+ ++H+S  LL+  + L  ++  +   +  A AI +T  L+  L F +    A I  
Sbjct: 2    THVYTKMHTSADLLKSTIRLEQLIPFLQEQKTQACAIVNTK-LYGLLPFCKALQQANIHA 60

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG  +++   D        K P      +VL   T EGYQ L+++ S + +    +Q  
Sbjct: 61   VIGLSVNVQWHDK-------KLP------LVLYARTQEGYQHLLKISSAISI----RQDD 103

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +   WL+      + +L+      +D           +  +    +LF    Y+ + R 
Sbjct: 104  VLPWKWLEGYSAGCIALLSSDDLTDVDDW---------QAMVSALFQLFNHHFYMGIARP 154

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             G    +E   V     H + LVA+ +  FL  ED+ A++V  A+     +    +    
Sbjct: 155  GGIKAEQEDDFVSWCEGHAIALVASQSCYFLRPEDHFAYEVARAIDTGEKLGNTMQTADV 214

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              ++     E  + F+D P+ L+ + ++   C   L      +P+F   E +      E+
Sbjct: 215  QGYFAPTVFEWQNWFADRPDWLDASTKMLACCKADLPKMPVQMPKFPVPEGET----AES 270

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L  +A  GLE R  Q AI   YH     +RL +EL +I  M F+ YFLIVADF+++AK+
Sbjct: 271  LLVKEAFTGLEERFKQLAIPVAYH-----ERLQYELEIICSMGFADYFLIVADFMRYAKE 325

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I  GPGRGS AGS+ AY+L+IT +DPL + LLFERFLNP+R+++PD DIDF   +R +
Sbjct: 326  NRILTGPGRGSSAGSLVAYSLSITQVDPLAYGLLFERFLNPERITLPDIDIDFVDSKRHQ 385

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YV  KYG   VAQIITFG+L AKA  RDV R        ++++ K+IPN P   ++L
Sbjct: 386  VIQYVAQKYGKANVAQIITFGTLSAKAVARDVARVFGFDAEMLEKISKMIPNKPG--ITL 443

Query: 490  Q-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            Q A+A+   F+     +    R  E++ KLEGL R++S HAAGIVI   PL   VP+  +
Sbjct: 444  QRAVAESQDFQGWLAENDKHLRWYEVALKLEGLPRNSSIHAAGIVIAPSPLVNTVPI-EE 502

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK-SLDFLAQRGVKVDLSLIPFDDHE 607
                +  TQ+ M  IE  GL+K DFLGL+ LT+L++         G  ++   IP  D +
Sbjct: 503  GHDGIYSTQWPMGDIEACGLVKMDFLGLRNLTILEQIRWSIYKAGGPWIEFERIPMHDDK 562

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    TLGIFQLES GM+QAL  + P    DI+A+ +LYRPGP+D I VY  RK G
Sbjct: 563  TFQLLQRGDTLGIFQLESDGMKQALRDIGPTSFLDIVAVNALYRPGPMDFIPVYAKRKAG 622

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E +   HP+++P+L+ET GVI+YQEQ+++IA +L+G+++ +AD+LRRA+ KK ++ +++
Sbjct: 623  REMVTMPHPVLEPILQETFGVIVYQEQIIKIASVLAGFTMGQADLLRRAVSKKNRQVLEE 682

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+  F+ GA + G  + +A  ++EL+ +FADYGF KSHA AY+VISYQ A++K H+P  F
Sbjct: 683  QRTAFVQGALRQGFEQHLAEEVYELIVRFADYGFPKSHAVAYSVISYQMAYLKAHFPQSF 742

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             AA ++    NVEKI++F  +A+   I   PPS+      F V +  I YSL+ IKGV  
Sbjct: 743  YAALLSNATGNVEKIQQFVHEAKDKGIPFYPPSLKNSTKYFTVENEGIRYSLSGIKGVPH 802

Query: 848  TTARHIMEASADKP--FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            T    I       P   ++L D    + ++    +VLESL++AGALD     R  L+ ++
Sbjct: 803  TFIEKIHGLRQTNPEVLNNLFDLAVALSAQHFKPKVLESLIYAGALDYLERDRAVLIMTV 862

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +   K A+ +        E+I       FS  K    +    +   +  +E+  LGFY S
Sbjct: 863  EAALKQAELLRPT-----EDIDLASAMAFSFGKPKYMQAGAMSQKEKLMHEKESLGFYIS 917

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
             HP  V +  L    I      +   R G +I++  ++   ++ +T+KG ++ +V   + 
Sbjct: 918  THP--VAQERLLWTDINSTCRELRQKRDGTSIKMIGLIEEVKKIRTKKGEQMAFVQLQDE 975

Query: 1024 AKEYEANFFP 1033
                   FFP
Sbjct: 976  FGTVSITFFP 985


>gi|300771841|ref|ZP_07081712.1| DNA-directed DNA polymerase III alpha subunit [Sphingobacterium
            spiritivorum ATCC 33861]
 gi|300761227|gb|EFK58052.1| DNA-directed DNA polymerase III alpha subunit [Sphingobacterium
            spiritivorum ATCC 33861]
          Length = 1474

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 358/1104 (32%), Positives = 574/1104 (51%), Gaps = 102/1104 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            F HL  HS +S+L+  +S+  ++D    ++ PA+A+TD  N+  A  F  +         
Sbjct: 259  FAHLHNHSQFSVLQSTISIGGLVDAAVKNKMPAVALTDHGNMMGAFHFVSRVLGHNKDAE 318

Query: 67   -----------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                             ++PI+GC+  I  +D+L  + +          +V L     GY
Sbjct: 319  TKNQELIDNGEAPTETIVKPIVGCEFFI-CEDHLDKSRKDNGY-----QVVFLAKNKNGY 372

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L ++ S  Y   +G   V      + E   E +I+L+G   G I           AE+
Sbjct: 373  HNLAKMSSVAYT--KGFYYVPRIDKKVVEQYKEDIIVLSGNLQGEIPNKILNIGENQAEE 430

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             L+ +K+ FG+  Y+ + RH   D  R ++ +V LA  H + ++ TNN+ ++++ D  AH
Sbjct: 431  ALIWWKEQFGEDFYIEVMRHGQEDENRVNETLVSLARRHGVKVIGTNNTYYVNKADAHAH 490

Query: 229  DVLMAVAHSTVVSQ-KDRPR------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            D+L+ V     +S  K R R         ++Y K+ SEM  +F+DLPEA+ N  EI  + 
Sbjct: 491  DILLCVKDGEKLSTPKGRGRGFRFGLPNQEYYFKSASEMKKVFADLPEAIVNIQEIIDKV 550

Query: 282  SFILQVHAPILPRF-------IEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIAKGYH 333
                     +LP+F       ++++ +D  K  EN+ L +    G E R A+        
Sbjct: 551  EIFKLNRDVLLPKFEIPEQFQVQEDNEDGGKRGENKYLAHLTYVGAEKRYAE-------I 603

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              D R+RLDFEL  I +  + GYFLIV DFI  A+   + VGPGRGS AGS  AY L IT
Sbjct: 604  TDDIRERLDFELATIEKTGYPGYFLIVQDFIAEARNMGVSVGPGRGSAAGSAVAYCLGIT 663

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            +IDP+++ LLFERFLNPDR+SMPD DIDF  + R +V++YV +KYG  +VAQIIT+G++ 
Sbjct: 664  NIDPIQYDLLFERFLNPDRVSMPDIDIDFDDEGRGKVMQYVIDKYGASQVAQIITYGTMA 723

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLADP--SVD 509
            AK++++D  R L +P S  + + KLIPN     + L  I   D+   +EA  A+   +V 
Sbjct: 724  AKSSIKDTARVLDLPLSDANEIAKLIPN-----LKLSKIFNMDEKALKEALRAEELEAVH 778

Query: 510  RLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +L+ ++               LEG  R+   HA G++I    ++  VP+     SDL VT
Sbjct: 779  KLISLADGAGLEAETIKQARVLEGSMRNTGIHACGVIITPDDITNFVPVSLAKDSDLYVT 838

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTK 615
            QF+   +E AGL+K DFLGLKTLTL++ ++  +  R  + +D    P DD  TY L    
Sbjct: 839  QFDNSVVESAGLLKMDFLGLKTLTLIKDTVANVKLRHNLDLDPDNFPIDDQLTYELFQRG 898

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
             T+G+FQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RK+G E IV   
Sbjct: 899  ETIGVFQYESPGMQKHMKDLKPTVFADLIAMNALYRPGPMEYIPSFIKRKHGIEPIVYDL 958

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               +  LKET G+ +YQEQVM ++Q L+G+S  +ADVLR+AMGKK K  +DK K +F+S 
Sbjct: 959  DACEEYLKETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKQKAVLDKMKPKFVSQ 1018

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A + G +  +   I+     FA Y FNKSH+  YA ++YQTA++K H+P E++AA ++  
Sbjct: 1019 AVEKGHNAKVLEKIWTDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHFPAEYMAAVLSNN 1078

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIM 854
            M++++++  F ++ R+  ++++ P VN     F V D   I + + A+KGVG      I+
Sbjct: 1079 MNDIKQVTFFMEECRRMGLEVLGPDVNESHYKFTVNDRGAIRFGMGAVKGVGAGAVDTIV 1138

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS-RMQLLQ-------SLD 906
            +     P+ S+ D   R+D +  N++  ESL +AG  D F  + R Q           L+
Sbjct: 1139 QTREGNPYKSVFDMAKRIDLRAANKKAFESLAYAGGFDSFKETHRAQYFHVDGDNSTGLE 1198

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
               ++ Q  ++N ++   ++F         +  L          + + E+ V+G Y + H
Sbjct: 1199 KAVRFGQRHKENESSAQASLFGGGGSAELPEPVLAPCPQWGLIEKLKYEKDVIGIYLTSH 1258

Query: 967  PLDVYK--------------PILRKMGIKGYEESV----ATIRGNNIRLAAMVVSKQQKK 1008
            PLD YK               ++ K+     EE V      I+   + +  ++ +   + 
Sbjct: 1259 PLDNYKFEIKHFCQNNVSELQLINKVKASEVEEDVLLEFNKIKNKEVIIGGIIAAANHRV 1318

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            ++ G   G +   + +  +E   F
Sbjct: 1319 SKNGKPFGILVIEDYSDSFEMMVF 1342


>gi|330466901|ref|YP_004404644.1| DNA polymerase III subunit alpha [Verrucosispora maris AB-18-032]
 gi|328809872|gb|AEB44044.1| DNA polymerase III subunit alpha [Verrucosispora maris AB-18-032]
          Length = 1177

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 375/1071 (35%), Positives = 571/1071 (53%), Gaps = 64/1071 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YS+L+GA  L ++  ++     PA+A+TD  N+  A +F ++A AAG+ P
Sbjct: 4    SFAHLHVHTEYSMLDGAARLKDLFAEVKRQGMPAVAMTDHGNMHGANDFYKQAMAAGVTP 63

Query: 70   IIGCQLDIDMQDNL--KMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            ++G +  +  +     K    G+        +       + +      G   L +L S+ 
Sbjct: 64   VLGIEAYVAPESRFHKKRVRWGRPEQKSDDVSGSGGYTHMTIWARNRVGLHNLFKLTSKA 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            Y      +  R+    L E   +GL+  TG  SG +           A +    ++ +FG
Sbjct: 124  YTEGYFVKWPRMDAELLAE-HADGLMATTGCPSGEVQTRLRLGHDAQALEAAAKYQDIFG 182

Query: 180  -DRLYVNLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
             +  ++ L  H G D  ++ +  ++++     +P V TN+S +  E   EAHDVL+ V  
Sbjct: 183  KENYFLELMDH-GLDIEKQVRDGLLEIGRKLNIPPVVTNDSHYTHEAQSEAHDVLLCVQT 241

Query: 237  STVVSQKDRPRVT-PDHYLKNRSEMVSI-FSDLP-EALENTVEIARRC--SFILQVHAPI 291
             + V+  +R +     +Y+K+  EM  +  SD+  E   NT+ +A +   + + + H  +
Sbjct: 242  GSNVADPNRFKFGGSGYYIKSADEMRGVDNSDVWLEGCRNTLLVAEKVDPTGMFEFHN-L 300

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +PRF   E +     EE+  R +  AGL  R   G I +G+  Q      ++EL VI +M
Sbjct: 301  MPRFPVPEGE----TEESWFRKETFAGLARRFPNG-IPEGHVVQ-----AEYELGVIIQM 350

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFL+VADFIQWAK   I VGPGRGS AGS+ AYAL ITD+DP+   L+FERFLNP+
Sbjct: 351  GFPSYFLVVADFIQWAKNQGIAVGPGRGSAAGSLVAYALGITDLDPIPHGLIFERFLNPE 410

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVI+YV +K+G ++VAQI TFG+++AKAA++D  R L  PY+ 
Sbjct: 411  RVSMPDVDIDFDERRRGEVIKYVTDKWGEDKVAQIATFGTIKAKAAIKDSARVLGYPYAV 470

Query: 472  VDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
             DR+ K +P              DP HP   +A       R    ++  V ++++ ++ +
Sbjct: 471  GDRITKAMPPAVMGKDIPLEGIFDPKHPRYAEA----GEIRGMYESEADVKKVIDTARGI 526

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R    HAAG+++   P+   +P+ R     + +TQF+    E  GL+K DFLGL+ 
Sbjct: 527  EGLIRQTGVHAAGVIMSAEPIIDHIPLMRRDSDGVIITQFDYPTCESLGLLKMDFLGLRN 586

Query: 579  LTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  ++ +     G ++DL  +P DD   Y LL    TLG+FQL+   MR  L  M+P
Sbjct: 587  LTIIDDAVKNIQLNHGKELDLLGLPLDDKGAYELLARGDTLGVFQLDGGPMRSLLRMMKP 646

Query: 638  DCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIY 691
            D  EDI A+++LYRPGP  +D+   Y  RKNG ++I  IHP ++  LKE    T G+I+Y
Sbjct: 647  DNFEDISAVLALYRPGPMGVDSHTNYALRKNGLQEITPIHPELEEPLKEILAPTYGLIVY 706

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQV + AQ+L+GY+L +AD+LRRAMGKK KE +DK+   F  G  + G S      +++
Sbjct: 707  QEQVQRAAQILAGYTLGQADLLRRAMGKKKKEILDKEFIPFRDGCRERGYSDDAIQKVWD 766

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +L  FA Y FNK+H+AAY ++SY TA++K HYP E++AA +T   D+ +K+  +  + R+
Sbjct: 767  VLVPFAGYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKMALYLSECRR 826

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCS 870
              IQ++PP VNT    F      I + L AI+ VG      IM    +K  +    DF S
Sbjct: 827  MGIQVLPPDVNTSAGPFTPVGKEIRFGLGAIRNVGANVVTSIMRCRQEKGEYADFYDFLS 886

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ-SLDNIQKYAQWVEKNRTNKHENIFAH 929
            +VD+   N++ +ESL+ AGA D  G+SR  LL    D I  YA    K    +++   A 
Sbjct: 887  KVDAVVCNKKTIESLIKAGAFDSMGHSRKGLLTVHADAIDAYADVKRKEAVGQYDLFGAG 946

Query: 930  ----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG---IKG 982
                E  T +  +        +   +   E+ +LG Y S HPL   + IL       I  
Sbjct: 947  FGEAEVATNTQVMPTIGDGEWDKRDKLAFEREMLGLYVSDHPLFGLEHILGASADCTISA 1006

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              E      G  + LA ++   Q++ T++G      T  + A   E  FFP
Sbjct: 1007 LSEEGTVPDGAVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1057


>gi|255326240|ref|ZP_05367326.1| DNA polymerase III subunit alpha [Rothia mucilaginosa ATCC 25296]
 gi|255296694|gb|EET76025.1| DNA polymerase III subunit alpha [Rothia mucilaginosa ATCC 25296]
          Length = 1180

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 384/1061 (36%), Positives = 573/1061 (54%), Gaps = 66/1061 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YS+L+GA  L ++          ++A +D   LF A +F ++A A  I+PI
Sbjct: 6    FTHLHVHTEYSMLDGAARLGDLFTHAKELGMKSMATSDHGFLFGAFDFWRQAKAHDIKPI 65

Query: 71   IGCQL------------DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            IG +              +   D  +    G   +     + +   T EG   L    S 
Sbjct: 66   IGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYT---HMTMWAETTEGMHNLFR-ASS 121

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
            +  L+      R+    LQ   ++GLI  TG  SG +           A +    F+ +F
Sbjct: 122  IASLEGQLYKPRMDREVLQTY-SKGLIATTGCPSGEVQTRLRLGQFDEAVQAASEFRDIF 180

Query: 179  G-DRLYVNLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            G D  Y  +  H G D  R  Q  + +LA    LP VATN+  +  +ED+ AH  L+ V 
Sbjct: 181  GKDNFYCEVMDH-GLDIERNVQEDLHRLAKKLNLPFVATNDLHYTRQEDHTAHAALLCVQ 239

Query: 236  HSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
              + ++   R +   D+ YL++  EM ++F D+P A ENT+EIA RC+      A  +P 
Sbjct: 240  SGSTLTDPKRFKFDADNFYLRSAEEMYALFGDIPGACENTLEIAERCNVEFNTKANYMPN 299

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            F   E ++    EE+    +   GL  R  QG           R++ ++E+ VI  M F 
Sbjct: 300  FPVPEGEN----EESWFVKEVEKGLHYRFPQGV------PDTVRKQAEYEVGVITSMGFP 349

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD++PL   L+FERFLNPDR+S
Sbjct: 350  GYFLVVADFINWAKRNGIRVGPGRGSGAGSMVAYAMRITDLNPLDHDLIFERFLNPDRVS 409

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFD+DF   RR EVI YV  KYG E+VAQI+TFG+++AK AL+D  R +  PYS  +R
Sbjct: 410  MPDFDVDFDDRRRGEVIDYVTEKYGEEKVAQIVTFGTIKAKQALKDASRVMDQPYSVGER 469

Query: 475  LCKLIPNDP-AHPVSLQAI--ADDSRFREAR-----LADPSVDRL----LEISQKLEGLY 522
            L K +P D     ++L  +   +D R+ EA      + DP VD++     E ++ LEGL 
Sbjct: 470  LTKAMPPDVMGKNIALANVYNEEDKRYAEAADLRALIEDP-VDKIYGQVFETAKGLEGLK 528

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++  + L  ++P+ R       +TQF+    E  GLIK DFLGL+ LT++
Sbjct: 529  RQWGVHAAGVIMSSKDLVDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTII 588

Query: 583  QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              +++ + + RG+ +DL  +  DD E+Y LL    TLG+FQL+   MR  L+ M+P+  E
Sbjct: 589  SDAVENIKSNRGIDLDLESLSLDDPESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEFE 648

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
             I A+++LYRPGP+  ++   Y  RKNGK++I  IHP ++  LK+    T G+I+YQEQV
Sbjct: 649  HISAVLALYRPGPMGANSHTNYALRKNGKQEIEPIHPELEEPLKDILDTTYGLIVYQEQV 708

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M IAQ ++ Y+L EAD+LRRAMGKK K E+DKQ   F  G   NG S+     ++++L  
Sbjct: 709  MAIAQKVANYTLGEADLLRRAMGKKKKAELDKQYATFHDGMISNGYSEGAIKALWDILLP 768

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            F+DY FNK+H AAY ++SY TA++K HYP E++AA +T   DN +K+  +  + R   I 
Sbjct: 769  FSDYAFNKAHTAAYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGIT 828

Query: 816  IMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVD 873
            ++ P VN   + F  VGD+ I + + AI+ VG      ++ A  +K  ++S  DF  +V 
Sbjct: 829  VLAPDVNESTLTFAPVGDD-IRFGMGAIRNVGANVVEGMIAAREEKGRYESFNDFLKKVP 887

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EK 931
             +  N+R +ESL+ AGA D  G++R  L    +     A  V++       ++F      
Sbjct: 888  LQVCNKRTIESLIKAGAFDDLGHTRRSLSLIHEAAVDAAVAVKRKEAAGQFDLFGSLGMD 947

Query: 932  GTFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
                D++T+    V     R     E+ +LG Y S HPL   +  L         + +  
Sbjct: 948  DALGDELTVTIPDVPEWDRREKLNFERDMLGLYVSDHPLRGLERALSDAASHSVHDIIGE 1007

Query: 990  ---IR-GNNIRLAAMV--VSKQQKKTRKGSRIGWVTFSEPA 1024
               +R G  + LA M+  VS++  K+  G++   V   +P+
Sbjct: 1008 DSHVRDGETVTLAGMLTGVSRRIAKS-SGNQYASVELEDPS 1047


>gi|282880114|ref|ZP_06288834.1| putative DNA polymerase III subunit alpha [Prevotella timonensis CRIS
            5C-B1]
 gi|281305987|gb|EFA98027.1| putative DNA polymerase III subunit alpha [Prevotella timonensis CRIS
            5C-B1]
          Length = 1235

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 379/1114 (34%), Positives = 584/1114 (52%), Gaps = 101/1114 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-------SQKAC 63
            +VHL VH+ YS+L+G   +  ++DK  AD    +AITD  N+F   EF       ++K  
Sbjct: 4    YVHLHVHTYYSILDGQSPIKRLVDKAVADGMQGMAITDHGNMFGIKEFFDYTNSVNKKLK 63

Query: 64   AAGIQP---IIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            A G QP   I GC++ +     QD +K          +   +++L     GY+ LI+LVS
Sbjct: 64   AEGKQPFKPIFGCEMYVARRTKQDKVKEMGD-----MSGYHLIVLAKNYNGYKNLIKLVS 118

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            R ++ D      R   + L++   E LI+ +   +G + R       +   + +  +K++
Sbjct: 119  RSWV-DGYYMRPRTDRADLEKY-HEDLIVSSACLAGEVPRKILKGDMEGVRETIEWYKRV 176

Query: 178  FGDRLYVNLQRHRGYDRY----RESQ---------VVQLAYTHELPLVATNNSLFLSEED 224
            FG+  Y+ +QRH   D +    RE+          +++LA  + + ++ TN+  F+ +++
Sbjct: 177  FGEDYYLEIQRHEVKDPHIRANREAYPLQQRANKVILELAKEYGVKVICTNDVHFVDQDN 236

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
             EAHD L+ ++    +    R   +   + K R+EM  +F DLPE L NT+EI  +    
Sbjct: 237  AEAHDHLLCLSTGKDLDDPTRMLYSKQEWFKTRAEMNQVFDDLPEVLTNTLEILDKVEAY 296

Query: 285  LQVHAPILPRF-------IEKECD------DIQKE------EENEL-------RNKAVAG 318
               H PI+P F        E+E +      D+ +E       EN L       R + + G
Sbjct: 297  SINHDPIMPNFPIPKSFGTEEEWEQKFSKEDLYREFTTDENGENPLSEADALKRIEHLGG 356

Query: 319  -------------LEVRLAQGA--IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                         LE    +GA  I     +++   R+ FEL+V+  M F GYFLIV+DF
Sbjct: 357  YEKMYRIKFEADYLEQLTYEGARKIYGDSFSKEIDDRIRFELHVMKTMGFPGYFLIVSDF 416

Query: 364  IQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            I+ A++  ++ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+S+PD D DF
Sbjct: 417  IRAAREELSVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRISLPDIDTDF 476

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D R +V+++V +KYGHE  A IIT+GS+  K +++DV R  ++P ++ + LCK IP+ 
Sbjct: 477  DDDGRGKVLKWVMDKYGHENCAHIITYGSMATKNSIKDVARVEKLPLNRSNALCKAIPDR 536

Query: 483  PAHPVSLQAIADDSRFREARLADPSVD----RLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                + +  I       E R A+ S D      ++ ++ LEG  R    HA G +I   P
Sbjct: 537  LPDGLKMNLINAIKCTPELRDAEASTDIRESNTIKYAKMLEGTVRGTGIHACGFIICRDP 596

Query: 539  LSQLVPM-------YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLA 590
            +S  VP+       ++D +++   TQ++   IE+ GLIK DFLGLKTL+ L++++ +   
Sbjct: 597  ISDWVPISTADDPDFKDEKTN--CTQYDGHVIEETGLIKMDFLGLKTLSELKEAVKNVKL 654

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
             RG+ +DL  IP DD  TY L     T+G FQ ESSGM+  L  + P    D+IA+ +LY
Sbjct: 655  TRGIDIDLDNIPIDDELTYQLYQEGRTIGTFQFESSGMQNYLRQLCPTKFGDLIAMNALY 714

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+DNI  +  RK G E I    P+++  LK+T G+ +YQEQVM +++LL+ ++  E+
Sbjct: 715  RPGPMDNIPSFIARKKGLEPISYPIPIMEKYLKDTYGITVYQEQVMLLSRLLANFTRGES 774

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D LR+AMGKK K  +D  K +FI G  KNG    I   I+    KFA Y FNKSHAA Y+
Sbjct: 775  DALRKAMGKKKKAIVDAMKPKFIEGGKKNGYDPKILDAIWADWEKFASYAFNKSHAACYS 834

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             +++QTA++K HYP EF+AA M+   D + ++ K   + +  NI  + P VN     F V
Sbjct: 835  WVAFQTAYLKAHYPAEFMAAIMSRRKDQITEVSKLMDECKSMNIATLGPDVNESYEKFGV 894

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              +  I + LAAIKG+G   A+ I+ E  A   +  + DF  RVD   +NR+  ESL  +
Sbjct: 895  NHHGEIRFGLAAIKGMGNAAAKAIIDEREAHGTYKDIFDFVQRVDFTNVNRKAFESLALS 954

Query: 889  GALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            G  D FG  R     +       ++ + +Y Q  +  ++    ++F  E         + 
Sbjct: 955  GGFDSFGLPRESYFTANAKGELFVETLVRYGQLYQTKKSELEHSLFGGENAVEIATPAIP 1014

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG---IKGYEESVATIRGNNIRLA 998
            K  + ++  R   E  ++G Y S HPLD Y  +L+ M         +     + +NI   
Sbjct: 1015 KPELWSNIERLNKEHELVGIYLSAHPLDEYSIVLKTMCNTQCCELADRAELSKKSNIVFG 1074

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             M+   + K T+ G   G+VT  + +   E  FF
Sbjct: 1075 GMITDVKDKFTKTGKPCGFVTIEDFSGSGELAFF 1108


>gi|224025746|ref|ZP_03644112.1| hypothetical protein BACCOPRO_02487 [Bacteroides coprophilus DSM
            18228]
 gi|224018982|gb|EEF76980.1| hypothetical protein BACCOPRO_02487 [Bacteroides coprophilus DSM
            18228]
          Length = 1265

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 383/1143 (33%), Positives = 613/1143 (53%), Gaps = 129/1143 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YS+L+G  S+  ++DK  A+    IA+TD  ++F   EF            
Sbjct: 4    FVHLHVHTQYSILDGQASIPRLVDKAIANGMRGIAVTDHGDMFGIKEFFNYVNKKNGGTN 63

Query: 61   ---------------------------KACAAGIQ--------PIIGCQLDIDMQDNLKM 85
                                        AC   ++        PIIGC++ +  +   ++
Sbjct: 64   GEIKDLKKKIAALESGKAESENPEAELAACKEQLEAARKKLFKPIIGCEMYVARR---RL 120

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGL 144
             ++      +   +V+L    +GY  LI+LVS+ +   +G     R   + L++   EGL
Sbjct: 121  EDKDGKQDQSGYHLVVLAKNLKGYHNLIKLVSKAWT--KGFYMRPRTDRAELEKY-HEGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYRES 198
            I+ +    G + R       + AE+ +  +K LFGD  Y+ LQRH+       ++ ++  
Sbjct: 178  IVCSACLGGEVPRRISAGQLEEAEEAIRWYKNLFGDDYYLELQRHKATVPRANHETFKLQ 237

Query: 199  QVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +VV     + A  +++ LV TN+  F+ EE+ EAHD L+ ++    +   +R   T   +
Sbjct: 238  EVVNQKLIEYARKYDIKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI----------------E 297
            +K R EM  IF+D+PEAL NTV+I  +  F    HAPI+P F+                E
Sbjct: 298  MKTREEMNEIFADVPEALSNTVDICDQVEFYSIDHAPIMPTFVIPESFGTEEEYRKKFTE 357

Query: 298  KECDD--IQKEEENELRNKAVA--------GLE----VRLAQGAIAK-GYHA-------- 334
            K+  D   Q E  N + ++A A        G E    ++L    +AK  Y          
Sbjct: 358  KDLFDEFTQDENGNVVMDEASAKAKIERLGGYEKLYRIKLEADYLAKLAYDGARRRYGEE 417

Query: 335  --QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK-KNNIPVGPGRGSGAGSVTAYALT 391
              ++ ++R+ FEL+++  M F GYFLIV DFI  A+ K ++ VGPGRGS AGS  AY L 
Sbjct: 418  LDEEVQERIKFELHIMKTMGFPGYFLIVQDFISAAREKLDVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA IIT+G+
Sbjct: 478  ITQIDPIKYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRLCKLIP+  P   ++L  AIA     + A ++ DP +
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLCKLIPDKIPDKKLNLPNAIAYVPELQAAEVSSDPIL 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               ++ ++ LEG  R+   HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++L+ +   +G+ +++  IP DD  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEALENIKNSKGIVLNIDEIPIDDPATYRLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPIMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGKKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA+M+  + N+ +I 
Sbjct: 838  KVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAATMSRNISNITEIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIM-EASAD 859
            K   +++   I+++ P VN   + F V   GD  I + L AIKGVG +  + I+ E   +
Sbjct: 898  KLMDESKATGIRVLGPDVNESLLKFSVNRRGD--IRFGLGAIKGVGESAVQSILSEREKN 955

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ---LLQSLDN--IQKYAQW 914
             P+ S+ DF  RV+    NR+ +E+L  AG  D FG  + +   +  S D   ++   ++
Sbjct: 956  GPYKSIFDFVQRVNLSACNRKNIENLALAGGFDSFGNIKREDFFMKNSKDETFVETLVRY 1015

Query: 915  VEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVY 971
              K + +K   I +   G    ++ T E  S    S   R   E+ ++G Y S HPLD Y
Sbjct: 1016 GSKYQMDKAAAINSLFGGEHEVEVATPEIISAPAWSDLERLNKERELVGIYLSAHPLDEY 1075

Query: 972  KPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +L  +     EE  ++  ++  ++ L  +V   ++  T+ G   G     + +   E 
Sbjct: 1076 AVVLENVCNVHMEELSNLTPLQNRDLILGGIVTGVREGYTKSGKPYGIAKVEDYSGVAEF 1135

Query: 1030 NFF 1032
             FF
Sbjct: 1136 AFF 1138


>gi|229817355|ref|ZP_04447637.1| hypothetical protein BIFANG_02617 [Bifidobacterium angulatum DSM
            20098]
 gi|229785144|gb|EEP21258.1| hypothetical protein BIFANG_02617 [Bifidobacterium angulatum DSM
            20098]
          Length = 1184

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 368/1076 (34%), Positives = 570/1076 (52%), Gaps = 64/1076 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAAD-QQPAIAITDTNNLFSALEFSQKAC 63
            +  S +FVHL  H+ YSLL+GA  +   L K AAD   PA+ ITD  N+  A E      
Sbjct: 1    MSDSGNFVHLHNHTHYSLLDGASKIPE-LAKYAADLSMPAVGITDHGNMHGAYEMYTNCV 59

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT-------------VPSIVLLVSTAEGYQ 110
              G++PIIG +  +  +   +  ++ +  + T             +  + L     EG  
Sbjct: 60   KVGVKPIIGIEAYVTPETARQ--DKSRVHWGTEAQRRDDVSGGGLITHLTLWAENDEGLV 117

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             LI+  S   L  + ++  R+    L    ++G+I  +G  SG I           A + 
Sbjct: 118  NLIKASSVANLEGRVQRYPRMDKEVLSTY-SKGVICGSGCPSGIIQTRLALGQFDEALRA 176

Query: 171  LLTFKKLFG-DRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
                + +FG D  ++ +  H      R    ++++A   + PL+ATN+S ++  ED EA 
Sbjct: 177  AGELQDIFGKDNFFIEIMDHGLTIENRNIPGLLEIAKKLDAPLLATNDSHYVHAEDAEAQ 236

Query: 229  DVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            D ++ +   + +   +R +     +YLK   EM  IF + P A +NT+EIA RC+ +   
Sbjct: 237  DAMLCINSGSHLDDPNRFKFDGTGYYLKPAEEMREIFKEFPGACDNTLEIAERCNVMFDD 296

Query: 288  H--APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            H     +P+F   +C +   E    L+ K   GLE R            ++  ++ D+E 
Sbjct: 297  HEDGAFMPQF---DCPEGWDEASLFLK-KVEEGLERRYDNNV------PEEVSKQADYEC 346

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VI +M+F GYFL+VAD+IQWAK + I VGPGRGS AGS+ AYA+ IT++DPL+  L+FE
Sbjct: 347  GVICQMQFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGSMVAYAMGITELDPLKHGLIFE 406

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+S+PD D+DF  + R  VI Y   KYG ++VAQ + +G ++ K AL+D  R +
Sbjct: 407  RFLNPERVSLPDIDVDFDPEGRLHVIDYCGEKYGRDKVAQCVIYGVIKTKQALKDSARIM 466

Query: 466  QMPYSQVDRLCK-LIPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQ 516
               ++  D++ K L P+      SL+ I D +         FRE   +DP   ++++ ++
Sbjct: 467  GYDFAMGDKVTKALPPSKNGKDASLKEIFDPTSKHYAEAREFRELYESDPDAHKIIDKAK 526

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             +EGL R    HA   ++G  P++   P+ + V + +  T F     E  GL+K DFLGL
Sbjct: 527  TIEGLIRQTGVHACATIMGSEPITDTSPLLQRVDNTV-TTTFEYHTCETLGLVKMDFLGL 585

Query: 577  KTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
              LT++Q +L  +   G   VD + IP DD ETY LL    TLG+FQL+S GMR  L+ +
Sbjct: 586  SNLTVIQDTLKNIVANGKDPVDYTKIPLDDKETYQLLARGDTLGVFQLDSDGMRALLKSL 645

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNN---RKNGKEKIVSIHPLIDPMLK----ETQGV 688
            +PD   DI AL++LYRPGP+D +  +NN   RKNG +KI  IHP ++  LK    ET G+
Sbjct: 646  KPDNFNDISALIALYRPGPMD-MDSHNNYAKRKNGLQKIEPIHPELEEPLKQVLDETYGL 704

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F  G  ++G S+  A  
Sbjct: 705  IVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFQGMKEHGYSEEAAQA 764

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +    DN +K   +  +
Sbjct: 765  VWDVLVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGTKDNKDKTALYLGE 824

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK--PFDSLE 866
            AR+  IQ++ P VN     +    + + + L AI+ VG      I+     K   F +  
Sbjct: 825  ARRMGIQVLSPDVNESVYAYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGKRGKFVNFM 884

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF  RV    LNRR++ESL+ AGA D    +R  L Q  +   +    +++       ++
Sbjct: 885  DFVRRVPLSALNRRLVESLIKAGAFDSIDPNRRALYQIHETAIESVVGLKRKEAEGQFDL 944

Query: 927  F-----AHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRK 977
            F     A E+    D  +T+      +   +   E+ +LG Y S HPL     +   LR+
Sbjct: 945  FSDMDDADEQDVMGDASVTVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMTAVLAGLRE 1004

Query: 978  MGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            M I    +   T+  G  + +A +V +  ++ +++G+    VT  +     +  FF
Sbjct: 1005 MSIAHLIDRAKTMGEGQQVTIAGLVTNVDRRVSKRGNAWAIVTVEDLESSIQCMFF 1060


>gi|298372024|ref|ZP_06982014.1| DNA polymerase III, alpha subunit [Bacteroidetes oral taxon 274 str.
            F0058]
 gi|298274928|gb|EFI16479.1| DNA polymerase III, alpha subunit [Bacteroidetes oral taxon 274 str.
            F0058]
          Length = 1320

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 368/1097 (33%), Positives = 583/1097 (53%), Gaps = 130/1097 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------- 58
            SFVHL VHSS+S+L+G   + +++DK    + P IA+TD  +++   EF           
Sbjct: 2    SFVHLHVHSSFSVLDGMSRIEDLVDKAIKYEMPGIALTDHGSMYGIKEFLDYVKKVKKSA 61

Query: 59   ---------SQKACA--AGIQPIIGCQ--------LDIDMQDNLKMTNQGKTPFPTVPS- 98
                     S++ CA     +PI+G +         D D    L +  + K     +   
Sbjct: 62   KEQLQKGKISEEECARIQSFKPILGVEAYCAARTLYDKDKNKKLFLERKNKDIIVDMSGF 121

Query: 99   -IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             ++LL    +GYQ L +LVS +  +D   Q  RI  + L+   +EGLI+ +    G I +
Sbjct: 122  HLLLLAKNKKGYQNLCKLVS-ISWVDGFYQKPRIDKNVLKTY-SEGLIVSSACLGGEIPQ 179

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR------GYDRYRESQ-----VVQLAYT 206
                N    AE+ +  F+ +FGD  Y+ +Q H+        + Y   Q     + +LA  
Sbjct: 180  YILNNEIDKAEETINWFRSVFGDDFYLEVQLHKPTRPEISNETYLNQQRVNEEIYRLARK 239

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
                +VATN+  F+  E  +AH+ L+ ++    +S  DR   T + Y+K   +M  +F++
Sbjct: 240  TGTKVVATNDIHFVEAEHADAHERLVCLSTGKKISDTDRMLYTKEEYMKTPEQMRELFAE 299

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDI----QKEEENEL--------RN 313
             PE ++NT+E+  +        +PI+P+F I +E   +    Q+  E +L         N
Sbjct: 300  HPEVIDNTLEVLSKVELFSLDSSPIMPKFDIPEEFGTVEGYRQQFTEQDLIAEFSRTAEN 359

Query: 314  KAVAGLEV--RLAQ-GAIAKGYHAQ---DY--------------------RQRLDFELNV 347
            K +   +   R+A+ G + K Y  +   DY                    R+R+DFELN 
Sbjct: 360  KPLDEEQAAKRIAELGGVEKLYRIKLEADYLTKITYDGAKERYADITDQIRERIDFELNT 419

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I  M F GYFLIV DF+  A++ N+ VGPGRGS AGSV AY L IT+IDP ++ LLFERF
Sbjct: 420  IKSMGFPGYFLIVQDFVAAARQMNVWVGPGRGSAAGSVVAYCLKITNIDPFKYDLLFERF 479

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNPDR+S+PD DIDF  D   +V+ +V +KYG E VA II +G++  K A+ DVGR  ++
Sbjct: 480  LNPDRISLPDIDIDFDNDGLSQVLEWVTHKYGKECVAHIINYGTMATKLAITDVGRIQEI 539

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL-----------------ADPSVDR 510
            P ++V+   K+IP+      SL+   D+   +  ++                   P++  
Sbjct: 540  PLNEVNNFKKIIPD------SLENYKDEKTGKTPKMNISNILKYSKEVQRWCKEKPAIAE 593

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD-------LPVTQFNMKWI 563
            +++ + +LEG  R    HA GI+I    L+  VP+      D       + VTQ++   I
Sbjct: 594  MMKYADQLEGTVRQTGVHACGIIIAPDDLTNFVPLSTAKEKDKSKKDTEVLVTQYDGHVI 653

Query: 564  EKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            E+ GLIK DFL LKTL+++++++ +    + + +D++ I ++D  T+ L     T+G+FQ
Sbjct: 654  EQIGLIKMDFLALKTLSIMKETVANIKKSKNIDLDINNIDWNDKATFELFAQGNTIGVFQ 713

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
             ES+GMR+ L  ++P  IED+IA+ +LYRPGP+D I  + +RK+G+  I    P+++  L
Sbjct: 714  FESTGMRKYLMQLKPTSIEDLIAMNALYRPGPMDYIPDFIDRKHGRMPITYDIPIMEQYL 773

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            K+T G+ +YQEQVM +++ L+G++  ++D LR+AMGKKIK  + + K +FI G   NG  
Sbjct: 774  KDTYGITVYQEQVMLLSRQLAGFTRGQSDQLRKAMGKKIKAMLMELKPKFIDGGVGNGHD 833

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
            + I   I+E   KFA Y FNKSH+  YAV++YQTA++KTHYP EF+AA++TL    + ++
Sbjct: 834  RNILEKIWEDWEKFASYAFNKSHSTCYAVLAYQTAYLKTHYPAEFMAANLTLNKGKITEV 893

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADK- 860
             KF ++ +   I ++ P VN   + F V     I + L  IK VG  T   I+E   +  
Sbjct: 894  NKFMEECKIMKIPVLLPDVNESDMLFTVNTKGEIRFGLGGIKNVGEATVEGIIEERKNNG 953

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQSLDNIQKYAQWVEK-- 917
             F S+ DF  RV+ K  N++ +ES   +GALD F    R    QS + I    +W  K  
Sbjct: 954  SFKSIFDFLERVNLKSCNKKAIESFALSGALDSFTDMKREDYFQSEETINNLMEWGRKAQ 1013

Query: 918  -NRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
              R++   ++F  E+   T+      E +S      R  +E+ ++G Y S HPLD Y+ I
Sbjct: 1014 AGRSSLQNSLFGEEEFDHTYPQFPKAEAWS---DLKRLNSEKDLIGIYLSAHPLDEYRSI 1070

Query: 975  LRKMGIKGYEESVATIR 991
            ++     G   S+A ++
Sbjct: 1071 IQ----YGCSHSIAELK 1083


>gi|116670142|ref|YP_831075.1| DNA polymerase III subunit alpha [Arthrobacter sp. FB24]
 gi|116610251|gb|ABK02975.1| DNA polymerase III, alpha subunit [Arthrobacter sp. FB24]
          Length = 1185

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 376/1056 (35%), Positives = 550/1056 (52%), Gaps = 84/1056 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  L  + D+      PA+A TD   LF A +F +KA   GI+P
Sbjct: 7    SFVHLHTHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWRKATDKGIKP 66

Query: 70   IIGCQLDI----------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
            IIG +  +                + Q    ++  G     +   + LL     G + L 
Sbjct: 67   IIGVEAYVTPGTARGDKSRVRWGEESQRKDDVSGGG-----SYTHMTLLSYNNVGMRNLF 121

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
               S   L     +  R+    L    +EGLI  TG  SG +         + A +    
Sbjct: 122  RASSIASLDSVFGKWPRLDRELLNTY-SEGLIATTGCPSGEVQTRLRLGQYREALEAAAE 180

Query: 174  FKKLFGDRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            F+ +FG   Y       G D  R     +++LA    LPLVATN+  +  E D +AH+ L
Sbjct: 181  FRDIFGAENYFCELMDHGLDIERRVTGDLLRLAKDLNLPLVATNDLHYTHEHDAKAHEAL 240

Query: 232  MAVAHSTVVSQKDRPR-------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
            +A+   + + +                +YLK+  EM  +F D PEA +NT+ IA RC   
Sbjct: 241  LAIQSGSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMRELFRDHPEACDNTLLIAERCEVS 300

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                A  +PRF   E +D    E + L  +   GL  R  QG   K       R++ D+E
Sbjct: 301  FNTGANYMPRFPCPEGED----ETSWLVKEVDKGLHYRYPQGIPDK------VRKQADYE 350

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L VI  M F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPL   L+F
Sbjct: 351  LEVITSMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLHHGLIF 410

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNPDR+SMPDFD+DF   RR EVI YV  KYG ERVA I+T+G+++ K AL+D  R 
Sbjct: 411  ERFLNPDRVSMPDFDVDFDDRRRSEVIDYVTRKYGDERVAMIVTYGTIKTKQALKDSSRV 470

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-----------DSRFREARLADPSVDRLLE 513
            L  P+S  + L K +P  PA       +AD              FR+    DP   ++ E
Sbjct: 471  LGYPFSMGETLTKALP--PAVMAKDIPLADIQNKEAKRYSEAGDFRQLISTDPEAAKVFE 528

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             +  +EGL R    HAAG+++   P+  ++P+ R  +    +TQF+    E  GLIK DF
Sbjct: 529  TALGIEGLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDF 588

Query: 574  LGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL+ LT++  +L+ +   RG+ +DL  +  DD  +Y LL    TLG+FQL+   MR  L
Sbjct: 589  LGLRNLTIISDALENIKMNRGIDLDLETLELDDTASYELLARGDTLGVFQLDGGPMRSLL 648

Query: 633  EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQ 686
            + M+PD  EDI A+++LYRPGP+  +    Y  RKN  ++++ IHP ++  L E    T 
Sbjct: 649  KLMKPDNFEDISAVLALYRPGPMGANAHTDYALRKNKIQEVIPIHPELEEPLSEILGGTY 708

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+I+YQEQVM +AQ L+GY+L +AD+LRRAMGKK K E+DKQ   F  G   NG S    
Sbjct: 709  GLIVYQEQVMAVAQKLAGYTLGQADILRRAMGKKKKSELDKQFAGFSQGMQDNGYSMAAV 768

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              ++++L  F+DY FNK+H+AAY VISY TA++K HY  E++AA +T   D+ +K   + 
Sbjct: 769  KTLWDILLPFSDYAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDKSAIYL 828

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSL 865
             + R+  I ++PP VN   ++F    N I + + AI+ VG      ++ A   +  + S 
Sbjct: 829  NECRRMGITVLPPDVNESALNFTPVGNDIRFGMGAIRNVGVNAVEAMVAAREKEGAYTSF 888

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
            +D+  +V +   N+R +ESL+ AGA D   + R  L    +        +++N      +
Sbjct: 889  KDYLMKVPAVVCNKRTIESLIKAGAFDSLNHHRRALAMIHEEAIDSVITLKRNEAIGQFD 948

Query: 926  IFAHEKGTFSDKITLEKFSVENSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKM 978
            +FA     F +  +    S+E   +       +   E+ +LG Y S HPL   + +L + 
Sbjct: 949  LFA----GFDEAESEASLSIEIPDLPEWEKKDKLSFERDMLGLYVSDHPLQGLEGLLSQH 1004

Query: 979  GIKGYEESVATI-------RGNNIRLAAMVVSKQQK 1007
                 ++S+ +I        G  I +A M+ S  ++
Sbjct: 1005 A----DQSITSIIAEDGPHDGAIITIAGMITSLSRR 1036


>gi|323344416|ref|ZP_08084641.1| DNA-directed DNA polymerase III alpha subunit [Prevotella oralis ATCC
            33269]
 gi|323094543|gb|EFZ37119.1| DNA-directed DNA polymerase III alpha subunit [Prevotella oralis ATCC
            33269]
          Length = 1235

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 384/1116 (34%), Positives = 571/1116 (51%), Gaps = 105/1116 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS-------QKAC 63
            +VHL VH+ YS+L+G   ++ ++DK  AD    +A+TD   +F   EFS       +K  
Sbjct: 4    YVHLHVHTYYSILDGQSKISYLVDKAIADGMRGMALTDHGAMFGIKEFSDYCEGVNKKRK 63

Query: 64   AAG---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            A G    +PI GC++ +  +   K   +  +   +   +++L     GY+ LI+LVSR +
Sbjct: 64   AEGKEPFKPIFGCEMYVARRH--KEDKEKDSGDKSGYHLIVLAKNYNGYKNLIKLVSRSW 121

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            + D      R     L+    E LI+ +   +G +         + A K L  +K++FG+
Sbjct: 122  V-DGYYYRPRTDHDDLERY-HEDLIVCSACIAGEVPSKILKGDIEGARKSLEWYKRVFGE 179

Query: 181  RLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              Y+ LQRH   D                   +++ A  + + L+ TN+  F  +E  EA
Sbjct: 180  DFYLELQRHEVKDPSLIANRTTYPLQEKVNKILIEFAKEYGIKLICTNDVHFEDKETAEA 239

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            HD L+ ++    +   +R R T   + K R+EM  +F D+PE L NT+EI  +       
Sbjct: 240  HDHLLCISTQADLDDPNRMRYTKQEWFKTRAEMNEVFYDMPEVLSNTLEILDKVEIYSIG 299

Query: 288  HAPILPRF--------------------IEKE-CDDIQKE-----EENELRNKAVAGLE- 320
            H PI+P F                    + KE C D   E     EE ELR + + G + 
Sbjct: 300  HDPIMPFFPIPEDFGTEELWRQKFTKEDLYKEFCSDENGENMMSPEEGELRIRHLGGYDK 359

Query: 321  -----------VRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                        +LA     K Y +   Q+  +R+ FEL+V+  M F GYFLIV DFI  
Sbjct: 360  IYRIKFEADYLAKLAYDGAKKVYGSPMPQEVIERVKFELHVMKTMGFPGYFLIVQDFINA 419

Query: 367  AKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            A+    + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+S+PD D DF  D
Sbjct: 420  ARNELEVMVGPGRGSAAGSVVAYCLGITQIDPLKYDLLFERFLNPDRISLPDIDTDFDDD 479

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             R  V+++V +KYGHE  A IIT+ S+  K +++DV R  ++P  + + LCK IP+    
Sbjct: 480  GRGRVLQWVMDKYGHENCAHIITYSSMATKNSIKDVARVEKLPLEKSNALCKAIPDRLPD 539

Query: 486  PVSLQ---AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             + +    AI      +EA  + DP     ++ ++ LEG  R    HA G +I   P+S 
Sbjct: 540  GMKMNLTNAIYCTPELKEAEASTDPRERNTIKYAKMLEGTVRGTGIHACGFIICRDPISN 599

Query: 542  LVPM-------YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRG 593
             VP+       ++D +  +PVTQ++   IE  GLIK DFLGLKTL+ L++++ D     G
Sbjct: 600  WVPVSTADDPDFKDKK--VPVTQYDGHVIESTGLIKMDFLGLKTLSELKEAVKDVKISLG 657

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            ++VDL  IP DD  TY L     T+G FQ ES GM++ L  + P   ED+IA+ +LYRPG
Sbjct: 658  IEVDLDHIPLDDELTYKLYQEGRTIGTFQFESPGMQKHLRELHPTVFEDLIAMNALYRPG 717

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  +  RK+    +    P ++  LK+T G+ +YQEQVM +++ L+G++  E+D L
Sbjct: 718  PMDYIPDFIRRKHDSSLVQYDIPCMEKYLKDTYGITVYQEQVMLLSRQLAGFTRGESDAL 777

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+AMGKK K  +D  K +FI G  K G    +   I+    KFA Y FNKSHA  Y+ ++
Sbjct: 778  RKAMGKKKKAIVDAMKPKFIEGGKKKGHDPKVLEKIWTDWEKFASYAFNKSHATCYSWVA 837

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-D 832
            YQTA+MK HYP E++AA MT    ++++I K   + +  NI  + P VN   ++F V   
Sbjct: 838  YQTAYMKAHYPAEYMAAIMTRRRSDIKEITKLMDECKSMNIATLGPDVNESYLEFGVNKK 897

Query: 833  NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I + LAAIKG+G   A  I+ E   +  +  + DF  RVD   +NR+  ESL  +G  
Sbjct: 898  GEIRFGLAAIKGMGDAAAEAIIKEREKNGIYKDIFDFAQRVDFSYVNRKAFESLAVSGGF 957

Query: 892  DCFGYSRMQLL-------QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            D FG  R Q L         LD + +Y Q  +  +T    ++F       +D I +    
Sbjct: 958  DDFGLRREQYLGVNTKGDMFLDTLVRYGQMYQAGQTEAQNSLFGD-----ADAIEIATPP 1012

Query: 945  V----ENSSV-RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE---SVATIRGNNIR 996
            +    E S++ R   E+ ++G Y S HPLD +  IL  M      E        + N I 
Sbjct: 1013 IPQGEEWSTIERLNRERELVGIYLSAHPLDDFSIILNSMCNTHCSELDNKAELAKKNEIT 1072

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  +V   + K T+ G   G+VT  +     E  FF
Sbjct: 1073 IGGIVTGVKSKFTKTGKPCGFVTIEDYEGSGELAFF 1108


>gi|189461926|ref|ZP_03010711.1| hypothetical protein BACCOP_02593 [Bacteroides coprocola DSM 17136]
 gi|189431320|gb|EDV00305.1| hypothetical protein BACCOP_02593 [Bacteroides coprocola DSM 17136]
          Length = 1265

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 376/1144 (32%), Positives = 602/1144 (52%), Gaps = 131/1144 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YS+L+G  S+  ++DK  A+    IA+TD  ++F   EF            
Sbjct: 4    FVHLHVHTQYSILDGQASIPRLVDKAIANGMRGIAVTDHGDMFGIKEFFNYVNKKNGGTN 63

Query: 61   ---------------------------KACAAGIQ--------PIIGCQLDIDMQDNLKM 85
                                        AC   ++        PIIGC++ +  +   ++
Sbjct: 64   GEIKDLKKKIAALESGKAESENPEVDLAACREQLEAAKKKLFKPIIGCEMYVARR---RL 120

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--LDQGKQSVRICLSWLQEIGTEG 143
            T++      +   +V+L    +GY  LI+LVS+ +        ++ R+ L    E   EG
Sbjct: 121  TDKEGKADQSGYHLVVLAKNLKGYHNLIKLVSKAWTEGFYMRPRTDRVEL----EKYHEG 176

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYRE 197
            LI+ +    G I R         AE+ +  +K LFGD  Y+ LQRH+       ++ Y+ 
Sbjct: 177  LIVCSACLGGEIPRRITAGQFAEAEEAIQWYKNLFGDDFYLELQRHKATVPRANHETYKL 236

Query: 198  SQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
             +VV     + +  + + LV TN+  F+ EE+ EAHD L+ ++    +   +R   T   
Sbjct: 237  QEVVNQKLVEYSKKYNIKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYTKQE 296

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFI 296
            ++K R EM  +F+D+PEAL NT +I  +  F    +API+P                +F 
Sbjct: 297  WMKTREEMNEVFADVPEALANTCDICDQVEFYSIDNAPIMPTFAIPEDFGTEEEYRKKFT 356

Query: 297  EKECDD--IQKEEENELRNKAVA--------GLE----VRLAQGAIAK----------GY 332
            EK+  D   Q E  N + ++A A        G E    ++L    +AK          G 
Sbjct: 357  EKDLFDEFTQDENGNVVMDEASAKAKIERLGGYEKLYRIKLEADYLAKLAYDGARRRYGE 416

Query: 333  HAQD-YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYAL 390
            H +D  ++R+ FEL+++  M F GYFLIV DFI  A+   ++ VGPGRGS AGS  AY L
Sbjct: 417  HLEDEVKERIKFELHIMKTMGFPGYFLIVQDFISAARNQLDVSVGPGRGSAAGSAVAYCL 476

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA IIT+G
Sbjct: 477  GITQIDPIKYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAHIITYG 536

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPS 507
            ++  K A++DV R  ++P S+ DRLCKL+P+  P   ++L  AIA     + A ++ DP 
Sbjct: 537  TMATKLAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEVSSDPV 596

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWI 563
            +   ++ ++ LEG  R+   HA G +I    ++  VP+     ++    + VTQ+    I
Sbjct: 597  LRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVI 656

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            E  GLIK DFLGLKTL++++++L+ + Q +G+ +++  IP DD  TY L +   T+G FQ
Sbjct: 657  EDTGLIKMDFLGLKTLSIIKEALENIKQSKGIILNIDEIPIDDPATYRLYSEGRTIGTFQ 716

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
             ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+++  L
Sbjct: 717  FESAGMQKYLRELQPTTFEDLIAMNALYRPGPMDYIPDFIDRKQGRKPIEYDIPVMEKYL 776

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            K+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG  
Sbjct: 777  KDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGKKNGHD 836

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              I   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA+M+  + N+ +I
Sbjct: 837  PKILEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAATMSRNISNITEI 896

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIM-EASA 858
             K   +++   + ++ P VN   + F V   GD  I + L AIKGVG +  + I+ E   
Sbjct: 897  TKLMDESKATGVNVLGPDVNESSLKFSVNRHGD--IRFGLGAIKGVGESAVQSILTERQK 954

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQK 910
            + PF  + DF  RV+    NR+ +E+L  AGA D F    R             ++ + +
Sbjct: 955  NGPFKDIFDFVQRVNLSACNRKNIENLALAGAFDSFPNIHREDFFVKNAKDETFVEVLVR 1014

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            Y    + ++     ++F  E         + + S  +   R   E+ ++G Y S HPLD 
Sbjct: 1015 YGNKYQMDKAAAANSLFGGEHEVEIATPEIVRASAWSDLERLNKERELVGIYLSAHPLDE 1074

Query: 971  YKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            +  IL  +      +   +  ++ +++ L  +V   ++  T+ G   G     + +   E
Sbjct: 1075 FSVILENVCNTHMAQLSDLTPLQNHDLTLGGIVTGVREGYTKTGKPFGVAKVEDYSGTAE 1134

Query: 1029 ANFF 1032
              FF
Sbjct: 1135 FAFF 1138


>gi|256825465|ref|YP_003149425.1| DNA polymerase III subunit alpha [Kytococcus sedentarius DSM 20547]
 gi|256688858|gb|ACV06660.1| DNA polymerase III, alpha subunit [Kytococcus sedentarius DSM 20547]
          Length = 1183

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 372/1074 (34%), Positives = 558/1074 (51%), Gaps = 73/1074 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  H+ YS+L+GA  ++++         PAIA TD  ++F A EF  K+     +P
Sbjct: 9    NFVHLHNHTEYSMLDGAARIDDMFTVADEMGMPAIASTDHGSVFGAYEFWSKSRKFETKP 68

Query: 70   IIGCQLDIDM------QDNLKMTNQGKTPFP---TVPSIVLLVSTAEGYQRLIELVSRMY 120
            I+G +  +        +  +K  + G+           + +   T EG   L    S + 
Sbjct: 69   IVGVEAYLTPGTHRTDKTRVKFGDGGRNDVSGSGAYTHMTMWAETTEGMHNLFR-ASSLA 127

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179
             ++      R+    L   G +G+I  TG  SG +           A++    F+ +FG 
Sbjct: 128  SIEGFYFKPRMDRELLDRYG-KGIIATTGCPSGEVQTRLRLGQYDKAKEAAAEFRDIFGK 186

Query: 180  DRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            D  +  L  H G D  R+  + +++LA   +LPLVATN+  +  +ED +AH  L+ V   
Sbjct: 187  DNFFCELMDH-GLDIERQVRADLLKLAKELDLPLVATNDLHYTHKEDAKAHGALLCVQSG 245

Query: 238  TVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSF-ILQVHAPILPRF 295
            + +   +R +   D  YLK+ +EM  ++ ++PEA +NT+ IA RC+    +     +PRF
Sbjct: 246  STLMDPNRFKFDSDEFYLKSAAEMRHLWREVPEACDNTLLIAERCNVEFTEGEGRYMPRF 305

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR-QRLDFELNVIARMKFS 354
                C D   +E +   ++   GL  R  +G         DY  ++  +E +VI    + 
Sbjct: 306  ---PCPD-GHDETSWFISEVQTGLARRFPEGV-------PDYALKQAAYEQDVIINKGYP 354

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD+DP+   L+FERFLNP+R S
Sbjct: 355  GYFLVVADFINWAKENGIRVGPGRGSGAGSMCAYAMGITDLDPIPHGLIFERFLNPERAS 414

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFD+DF + RR EVI+YV  KYG +RVA I+T+G+++AK AL+D  R +  P++  ++
Sbjct: 415  MPDFDVDFDERRRPEVIKYVTEKYGSDRVAMIVTYGTIKAKQALKDASRVMGFPFATGEK 474

Query: 475  LCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            L K +P              D  HP   +AI     FRE    DP    + + +  LEGL
Sbjct: 475  LTKAMPPAVMGKDIPLSGIFDEKHPRYAEAI----DFRELHANDPEAREVFDTAVGLEGL 530

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HAAG+++   PL  L+P+ R       +TQF+    E  GL+K DFLGL+ LT+
Sbjct: 531  KRQWGVHAAGVIMASEPLIDLIPIMRREADGQIITQFDYPSCETLGLVKMDFLGLRNLTI 590

Query: 582  LQKSL-DFLAQRGVKVDLSLIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            L  ++ +    R   +DL  +  D  D   Y LL    TLG+FQL+  GMR  L  MQPD
Sbjct: 591  LDDAIANIEMNREETIDLDALSKDMTDPAAYKLLARGDTLGVFQLDGGGMRSLLRLMQPD 650

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNN--RKNGKEKIVSIHP----LIDPMLKETQGVIIYQ 692
              EDI A ++LYRPGP+      N   RKNGK+ +  IHP     ++P+LK T G+IIYQ
Sbjct: 651  NFEDISAALALYRPGPMGANAHTNFALRKNGKQPVDYIHPELTEALEPILKMTYGLIIYQ 710

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM+IAQ L+GY+L  AD+LRRAMGKK KE +D +   F +G   NG SK     ++ +
Sbjct: 711  EQVMEIAQKLAGYTLGNADLLRRAMGKKKKEVLDAEYVNFEAGMLANGYSKDAVETLWGI 770

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  F+DY FNK+H AAY V+SY TA++K +Y  E++AA +T   D+ +K   +  + R+ 
Sbjct: 771  LLPFSDYAFNKAHTAAYGVVSYWTAYLKANYRAEYMAALLTSVRDDKDKSALYLGECRRM 830

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSR 871
             I+++PP VN    +F      I + L AI+ VG    R I+    +K  F S EDF  +
Sbjct: 831  GIKVLPPDVNESIANFAAVGQDIRFGLEAIRNVGGNVVRAIVATREEKGKFTSFEDFLRK 890

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
              +   N+R ++SL+ AGA D  G+ R  L    +         +K +    E++FA   
Sbjct: 891  CPAVVCNKRTIDSLIKAGAFDDLGHQRQALATVHEAYVDALVGEKKEQERGQESLFASLM 950

Query: 932  GTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            G   D  +          + ++       E+ +LG Y S HPL   +  L +      + 
Sbjct: 951  GDGGDDASSIGGMPAIPDLEWDKQTLLAFEREMLGLYVSDHPLFGIEHALSRAS----DT 1006

Query: 986  SVATIR-------GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            S+A +        G  + +A ++     K+ ++G      T  +     E  FF
Sbjct: 1007 SIAHLNSEDGRPDGAEVTIAGLITQVVTKRNKRGELWAIATVEDLEGSIECLFF 1060


>gi|227544900|ref|ZP_03974949.1| possible DNA-directed DNA polymerase [Lactobacillus reuteri
           CF48-3A]
 gi|300910073|ref|ZP_07127533.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
           reuteri SD2112]
 gi|227185112|gb|EEI65183.1| possible DNA-directed DNA polymerase [Lactobacillus reuteri
           CF48-3A]
 gi|300892721|gb|EFK86081.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
           reuteri SD2112]
          Length = 1115

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 356/970 (36%), Positives = 531/970 (54%), Gaps = 55/970 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F  L V SSYSLL+    +++++         A+A+TD N L+ A+EF   A  AGI+PI
Sbjct: 3   FTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G +L + + +    T+  K        +V L     GYQ L++L +    L Q ++  +
Sbjct: 63  LGLRLVVALNE----TDGTKL------DLVFLAKNQRGYQHLMDLST----LQQTRKDKK 108

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I L+  Q     G + +      P     F   +Q     +LT     GD   V L  + 
Sbjct: 109 IPLTIAQISSLLGELFIII----PPQSTVFSILAQPTS--ILTELANLGDDDSVLLGVNS 162

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD---RPR 247
             D  +   + QL+    LPLV T+   +L+  D  A  VL A+     V  KD     R
Sbjct: 163 RLDDVQIDTLQQLSKQLSLPLVGTSPVDYLNANDLFASRVLQAI--DAGVELKDPTIEAR 220

Query: 248 VTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               HYL ++ ++V  ++   L  A + TVE+A  C+  LQ  AP+LP F  +     Q+
Sbjct: 221 RRGQHYLHSKEQIVQDYNAKGLSAAAQKTVEVAALCNVELQFRAPVLPHFKNQAGIPSQQ 280

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                LR+  + GL+ R     +A G   Q Y++RL  EL VI  M F  YFLIV D + 
Sbjct: 281 Y----LRSLCIQGLKKR----RVAPGKTIQQYQERLAMELKVIHEMGFDDYFLIVWDVMN 332

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A +  I   PGRGS AGS+ AYAL IT++DPL++ LLFERFLNP+R  MPD D+D   +
Sbjct: 333 FAHQQKITTDPGRGSAAGSLVAYALAITEVDPLQYDLLFERFLNPERAQMPDIDLDIPDN 392

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RRDEV++YV  KYGH+RVAQIITFG+L AK  +RDV R   +P   + RL   +P+   H
Sbjct: 393 RRDEVLQYVHQKYGHQRVAQIITFGTLAAKQVVRDVSRVFNLPRYDMQRLIDALPHG-LH 451

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                A+ +  + +     +P    L++++Q+LEGL RH S HAAGIV+ ++PL ++VP+
Sbjct: 452 VTLKDALKESQQLKNLLDDNPKFRLLIQVAQQLEGLPRHYSIHAAGIVLSEQPLHEIVPL 511

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            +D    L +TQF    +E  GL+K DFLGLK L+++   L  + Q     DL  I F+D
Sbjct: 512 -QDGSDGLLMTQFAKDTVEALGLLKMDFLGLKNLSIMDNILQMIRQEDPNFDLQKINFND 570

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T  L     T GIFQ ESSG+R  L  + P   EDI+A+ +LYRPGP++NI  +  RK
Sbjct: 571 PLTLQLFQRGKTEGIFQFESSGIRNVLVNLHPTNFEDIVAVNALYRPGPMENISHFTARK 630

Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            GKEKI    P ++ +L  T G+++YQEQVMQ+A +++G++L EAD+LRRAM KK K  M
Sbjct: 631 AGKEKITYPAPSLEKILGPTYGILVYQEQVMQLASVMAGFTLGEADLLRRAMSKKKKATM 690

Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
           +  + +FI+GA+++G S  +A  +FE + +FA+YGFN+SHA AY++++++ A++K +YP 
Sbjct: 691 EDMRTKFIAGATEHGYSAQVAHQVFEYIDRFANYGFNRSHAVAYSMMAFEMAYLKVYYPA 750

Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            F  A M  E  N+EK+K+   DA+QF +++  P +N     F + D  +Y+  +AIKGV
Sbjct: 751 AFFTALMNAET-NIEKLKRHVGDAKQFGVKVSGPRINISESSFLLHDGTVYFGFSAIKGV 809

Query: 846 GTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
                  I+E   +   F  L +F +R+  +   + ++E L+++GA D   Y+R ++   
Sbjct: 810 RRDFVAAILEERQENGKFTDLRNFIARIPERWQKQELIEPLIYSGAFDKMEYNRAEM--- 866

Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGF 961
           +D + K    +E         +FA     F D          N      R   E   LG 
Sbjct: 867 IDALPKLISGIE---------LFAG-FANFDDPALQTAIDQRNEFPLLTRLTKENEYLGV 916

Query: 962 YFSGHPLDVY 971
           Y SGHP+  Y
Sbjct: 917 YLSGHPVTQY 926


>gi|171742474|ref|ZP_02918281.1| hypothetical protein BIFDEN_01586 [Bifidobacterium dentium ATCC
            27678]
 gi|306822385|ref|ZP_07455764.1| DNA-directed DNA polymerase III alpha subunit [Bifidobacterium
            dentium ATCC 27679]
 gi|309802136|ref|ZP_07696245.1| putative DNA polymerase III subunit alpha [Bifidobacterium dentium
            JCVIHMP022]
 gi|171278088|gb|EDT45749.1| hypothetical protein BIFDEN_01586 [Bifidobacterium dentium ATCC
            27678]
 gi|304554383|gb|EFM42291.1| DNA-directed DNA polymerase III alpha subunit [Bifidobacterium
            dentium ATCC 27679]
 gi|308221216|gb|EFO77519.1| putative DNA polymerase III subunit alpha [Bifidobacterium dentium
            JCVIHMP022]
          Length = 1195

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 356/1084 (32%), Positives = 571/1084 (52%), Gaps = 69/1084 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S +FV L  H+ YSLL+GA  + +++ +      PA+ ITD  N+  A E    A  
Sbjct: 1    MATSGNFVQLHNHTHYSLLDGASKIPDLVKRAKELNMPAVGITDHGNMHGAYEMWSTAVN 60

Query: 65   AGIQPIIGCQ----------------LDIDMQDNLKMTNQGKTPFPT-----VPSIVLLV 103
            AGI+PIIG +                 D +   +L   ++ + P        +  + +  
Sbjct: 61   AGIKPIIGIEAYVTPETARQDPTRVSWDTNWNPDLDPNHRKRNPNDVSGGGLITHLTMWA 120

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
             T EG   L++  +   L  +  +  R+    L +  ++G+I  +G  SG I        
Sbjct: 121  ETDEGLVNLMKASTDANLEGRVMRYPRMDKEILSKY-SKGIIASSGCPSGIIQTRLLLGQ 179

Query: 164  SQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLS 221
               A +     + +FG D  Y+    H    +R     ++ +A     PL+ATN+S ++ 
Sbjct: 180  FDEALRAAGELQDIFGRDNFYIEFMDHGLNIERQVTDGLLDIAKKLNAPLLATNDSHYVR 239

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
             ED  A D ++ +   + + +  R +     +YLK+  EM  +F DLPEA +NT+EIA R
Sbjct: 240  AEDAGAQDAMLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDLPEACDNTLEIAER 299

Query: 281  CSFILQVH--APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
            C+ +   H     +P+F   +C +   E    L+ K   GLE R        G    +  
Sbjct: 300  CNVMFDDHEDGAFMPQF---DCPEGWDETSLFLK-KVEEGLEKRY------DGNPPIEVL 349

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            ++ D+E  VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP+
Sbjct: 350  KQADYECGVICQMQFCGYFLVVADYINWAKTHGVMVGPGRGSAAGAMVAYAMGITELDPI 409

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
            +  L+FERFLNP+R+S+PD D+DF  D R  V+ YV  KYG ++VAQ + +G+++ K AL
Sbjct: 410  QHGLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQAL 469

Query: 459  RDVGRALQMPYSQVDRLCKLIP-------NDPAHPV---SLQAIADDSRFREARLADPSV 508
            +D  R +   +S  +R+ K +P       + P H +   + +  A+   FRE   +DP  
Sbjct: 470  KDSARIMGFDFSMGERVTKALPPAQTGGKDIPLHDIFDPASKRYAEAREFRELYDSDPDA 529

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAG 567
             R+ + +  +EGL R    HA   ++G  P++   P+    R+D  V T       E  G
Sbjct: 530  KRVTDEAMGIEGLIRQTGVHACATIMGSEPITNTSPLLE--RTDGTVTTTLEYHTCETLG 587

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGL  LT+++ +L+ +   G  ++D + IP DD  TY LL+   TLG+FQL+S 
Sbjct: 588  LVKMDFLGLSNLTVIRDTLNNIEANGKDRIDHTRIPLDDKATYELLSRGDTLGVFQLDSD 647

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLI-DPM-- 681
            GMR  L+ ++P    DI AL++LYRPGP  +D+   Y  RKNG +KI  IHP + +P+  
Sbjct: 648  GMRSLLKTLKPSNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKE 707

Query: 682  -LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
             L ET G+I+YQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G
Sbjct: 708  VLDETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHG 767

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             S+  A  ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +
Sbjct: 768  YSQEAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKD 827

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME--ASA 858
            K   +  +AR+  IQ++ P VN    ++    + + + L AI+ VG      I++   S 
Sbjct: 828  KTALYLGEARRMGIQVLSPDVNESVFEYSAVGDVVRFGLGAIRNVGRNAVDDIIKERESG 887

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
               + +  DF  RV    LNRR++ESL+ AGA D    +R  L    +        +++ 
Sbjct: 888  HGKYVNFPDFVRRVPLSALNRRLVESLIKAGAFDSVDPNRRALFTIHEAAINSVVGIKRK 947

Query: 919  RTNKHENIF------AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
            +     ++F      A + G     +++      +   +   E+ +LG Y S HPL   +
Sbjct: 948  QAEGQFDLFSDLDDSAEQDGMGDAMVSVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQ 1007

Query: 973  PI---LRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             +   LR+M I    +   T+  G  + +A ++ +  ++ ++KG+    VT  +     +
Sbjct: 1008 SVLSSLREMSIAHLIDRAGTMPDGQQVTVAGLITNVDRRVSKKGNPWAIVTIEDLESSIQ 1067

Query: 1029 ANFF 1032
              FF
Sbjct: 1068 CMFF 1071


>gi|146345343|gb|ABQ23683.1| DNA polymerase III alpha subunit [Lactobacillus reuteri]
          Length = 1111

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 356/970 (36%), Positives = 531/970 (54%), Gaps = 55/970 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F  L V SSYSLL+    +++++         A+A+TD N L+ A+EF   A  AGI+PI
Sbjct: 3   FTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G +L + + +    T+  K        +V L     GYQ L++L +    L Q ++  +
Sbjct: 63  LGLRLVVALNE----TDGTKL------DLVFLAKNQRGYQHLMDLST----LQQTRKDKK 108

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I L+  Q     G + +      P     F   +Q     +LT     GD   V L  + 
Sbjct: 109 IPLTIAQISSLLGELFIII----PPQSTVFSILAQPTS--ILTELANLGDDDSVLLGVNS 162

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD---RPR 247
             D  +   + QL+    LPLV T+   +L+  D  A  VL A+     V  KD     R
Sbjct: 163 RLDDVQIDTLQQLSKQLSLPLVGTSPVDYLNANDLFASRVLQAI--DAGVELKDPTIEAR 220

Query: 248 VTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               HYL ++ ++V  ++   L  A + TVE+A  C+  LQ  AP+LP F  +     Q+
Sbjct: 221 RRGQHYLHSKEQIVQDYNAKGLSAAAQKTVEVAALCNVELQFRAPVLPHFKNQAGIPSQQ 280

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                LR+  + GL+ R     +A G   Q Y++RL  EL VI  M F  YFLIV D + 
Sbjct: 281 Y----LRSLCIQGLKKR----RVAPGKTIQQYQERLAMELKVIHEMGFDDYFLIVWDVMN 332

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A +  I   PGRGS AGS+ AYAL IT++DPL++ LLFERFLNP+R  MPD D+D   +
Sbjct: 333 FAHQQKITTDPGRGSAAGSLVAYALAITEVDPLQYDLLFERFLNPERAQMPDIDLDIPDN 392

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RRDEV++YV  KYGH+RVAQIITFG+L AK  +RDV R   +P   + RL   +P+   H
Sbjct: 393 RRDEVLQYVHQKYGHQRVAQIITFGTLAAKQVVRDVSRVFNLPRYDMQRLIDALPHG-LH 451

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                A+ +  + +     +P    L++++Q+LEGL RH S HAAGIV+ ++PL ++VP+
Sbjct: 452 VTLKDALKESQQLKNLLDDNPKFRLLIQVAQQLEGLPRHYSIHAAGIVLSEQPLHEIVPL 511

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            +D    L +TQF    +E  GL+K DFLGLK L+++   L  + Q     DL  I F+D
Sbjct: 512 -QDGSDGLLMTQFAKDTVEALGLLKMDFLGLKNLSIMDNILQMIRQEDPNFDLQKINFND 570

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T  L     T GIFQ ESSG+R  L  + P   EDI+A+ +LYRPGP++NI  +  RK
Sbjct: 571 PLTLQLFQRGKTEGIFQFESSGIRNVLVNLHPTNFEDIVAVNALYRPGPMENISHFTARK 630

Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            GKEKI    P ++ +L  T G+++YQEQVMQ+A +++G++L EAD+LRRAM KK K  M
Sbjct: 631 AGKEKITYPAPSLEKILGPTYGILVYQEQVMQLASVMAGFTLGEADLLRRAMSKKKKATM 690

Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
           +  + +FI+GA+++G S  +A  +FE + +FA+YGFN+SHA AY++++++ A++K +YP 
Sbjct: 691 EDMRTKFIAGATEHGYSAQVAHQVFEYIDRFANYGFNRSHAVAYSMMAFEMAYLKVYYPA 750

Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            F  A M  E  N+EK+K+   DA+QF +++  P +N     F + D  +Y+  +AIKGV
Sbjct: 751 AFFTALMNAET-NIEKLKRHVGDAKQFGVKVSGPRINISESSFLLHDGTVYFGFSAIKGV 809

Query: 846 GTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
                  I+E   +   F  L +F +R+  +   + ++E L+++GA D   Y+R ++   
Sbjct: 810 RRDFVAAILEERQENGKFTDLRNFIARIPERWQKQELIEPLIYSGAFDKMEYNRAEM--- 866

Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGF 961
           +D + K    +E         +FA     F D          N      R   E   LG 
Sbjct: 867 IDALPKLISGIE---------LFAG-FANFDDPALQTAIDQRNEFPLLTRLTKENEYLGV 916

Query: 962 YFSGHPLDVY 971
           Y SGHP+  Y
Sbjct: 917 YLSGHPVTQY 926


>gi|226357239|ref|YP_002786979.1| DNA polymerase III subunit alpha [Deinococcus deserti VCD115]
 gi|226319229|gb|ACO47225.1| putative DNA-directed DNA polymerase (DNA polymerase III, alpha
            subunit) [Deinococcus deserti VCD115]
          Length = 1341

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 316/736 (42%), Positives = 453/736 (61%), Gaps = 62/736 (8%)

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
            HA    +R ++EL+VI  M F  YFLIVAD+I WAK  +I VGPGRGSGAGS+ AYA+ I
Sbjct: 476  HALVILRRAEYELSVINNMGFPDYFLIVADYINWAKDQDISVGPGRGSGAGSLVAYAMRI 535

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T++DPL F+LLFERFLNPDR+SMPDFDIDF   RR EVI YVQ+KYG ++VAQI TFG++
Sbjct: 536  TNLDPLEFALLFERFLNPDRISMPDFDIDFNDARRSEVIAYVQDKYGEDKVAQIATFGTM 595

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
             +KA L+DV R + + Y++VD++ KLIP       SL+         +AR A P + ++L
Sbjct: 596  ASKACLKDVARVMGLEYAKVDKVSKLIPIKFGKSYSLE---------QAREAVPDIAQML 646

Query: 513  ----------EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
                      E +QKLEGL RHAS HAAG+VIG   L+ LVP+ RD   +  V Q++MK 
Sbjct: 647  AEDGQLLEAYEFAQKLEGLTRHASVHAAGVVIGKTQLTDLVPVMRDTSGEGMVCQYDMKA 706

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            +E  GLIK DFLGL+TL+ L ++   + + RG+++D   IPFDD  TY L++   T G+F
Sbjct: 707  VEDIGLIKMDFLGLRTLSFLDEARRIMRESRGIEIDFDAIPFDDARTYELMSRGDTKGVF 766

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH------ 675
            QLE +G+  A   ++P  + DIIAL +LYRPGP++NI  Y  R +G E++  +       
Sbjct: 767  QLEGAGIADASRRLKPRRLADIIALSALYRPGPMENIPTYVRRHHGLEEVDYVRDGFPTS 826

Query: 676  -PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
               ++ +L ET G+ +YQEQ+MQIA  ++G+SL  AD+LRRAMGKK  EEM +Q++ F+ 
Sbjct: 827  AKYLEKILAETYGIPVYQEQIMQIASEVAGFSLGGADLLRRAMGKKDAEEMKRQRQIFVE 886

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            GA  NG+ K  A  +F+LL  FA+YGFNKSH+AAY VI+YQTAW+K +YPVEF+AA +T+
Sbjct: 887  GAGNNGVPKEEANKLFDLLDAFANYGFNKSHSAAYGVITYQTAWLKANYPVEFMAALLTV 946

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
            E  + +K+ ++  DAR+ ++ ++PP +N    DF V    I + L AIKG+G    + I+
Sbjct: 947  ERRDSDKVAEYVSDARKMDVHVLPPDINRSAPDFAVEGEEILFGLYAIKGLGEAAVQRIL 1006

Query: 855  EASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL-DNIQKYA 912
            E       + SL DFCSR+ +K  NR+ +ESL+ +GA D FG  R QLL SL D ++  A
Sbjct: 1007 EERQRAGRYKSLADFCSRLGNKVCNRKAMESLIKSGAFDQFG-ERNQLLHSLEDALEDAA 1065

Query: 913  QWVEKN--RTNKHENIFAHEK-----------GTFSDKITLEKFSVENSSVRFENEQRVL 959
               + N    +    +F  E+             F+D   LE+ S+E  +         L
Sbjct: 1066 STADINAKAASGMSMMFGMEEVKKERPLRSGIPPFTD---LERLSIEKEA---------L 1113

Query: 960  GFYFSGHPLDVYKPI-------LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            G Y SGHPL+ ++ +       +  +     +++VA  +     LA M+    +K T+ G
Sbjct: 1114 GLYISGHPLEQHEGLREAASCRISDLDTWFTQQNVAPGKRLKAVLAGMIEGVVKKPTKSG 1173

Query: 1013 SRIGWVTFSEPAKEYE 1028
              +     ++ + + E
Sbjct: 1174 GMMARFILADESGQTE 1189



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 149/304 (49%), Gaps = 28/304 (9%)

Query: 11  FVHLQVHSSYSLLEGALSLNNIL----DKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           F HL  H+ YSLL+GA  L ++L    +       PA+A+TD  N+  A+ F   A AAG
Sbjct: 34  FAHLHQHTQYSLLDGAAKLKDLLKWAKEVTPEGCTPALAMTDHGNMHGAVHFYNYAQAAG 93

Query: 67  IQPIIGCQLDI-----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
           ++PIIG +  +       +D  +  +  K  F     + LL    EGYQ L  L SR Y 
Sbjct: 94  VKPIIGYEAYVVPGQGTRRDRTRAQDGEKGIF----HLTLLARDFEGYQNLCRLSSRGY- 148

Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
            +      RI    LQE   +G+I  +G     + +       + A+KRLL +++LFG+ 
Sbjct: 149 TEGYYYKPRIDHELLQE-HHKGVIAFSGCLGSEVQQLLLQGREEDAKKRLLWYRELFGEN 207

Query: 182 LYVNLQRHRGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            Y+ +Q H   ++ R + +++ A+  EL   +VATN+  ++ + D  AH+ L+A+     
Sbjct: 208 YYIEIQDHGLPEQKRNNPILR-AWAQELGIGMVATNDGHYVKKSDATAHETLLAIQTKAT 266

Query: 240 VSQKDRPRVTPDH-YLKNRSEMVSIF--SDL-PEALENTVEIARRCSFILQV------HA 289
           ++ ++R +   D  Y+KN  EM +    SD   E  +NT  IA  C+  L V        
Sbjct: 267 LADENRFKFPCDEFYVKNLEEMQAALPVSDWGEEPFDNTSAIADLCNVDLPVGKKRVYQM 326

Query: 290 PILP 293
           P LP
Sbjct: 327 PALP 330


>gi|120437353|ref|YP_863039.1| DNA polymerase III subunit alpha-1 [Gramella forsetii KT0803]
 gi|117579503|emb|CAL67972.1| DNA polymerase III subunit alpha-1 [Gramella forsetii KT0803]
          Length = 1461

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 362/1085 (33%), Positives = 573/1085 (52%), Gaps = 92/1085 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            L++ P F HL  HS +S+L+  +S+ +++   A +   A+A+TD  N+  A  F ++   
Sbjct: 257  LDEVP-FAHLHNHSQFSVLQSTISIPDLIAAAADEDMNAVALTDHANMMGAFHFVKEIGT 315

Query: 65   AG--------------------IQPIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLL 102
                                  ++ I+GC+  +  +  D  +  N  +        +V+L
Sbjct: 316  YNKSVKEHNATAEENGEDLKKPLKGIVGCEFFVCENHADKSRKDNGYQ--------VVML 367

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
                 GY  L ++ S+ Y  D      RI    ++E   E +I+LTG   G +       
Sbjct: 368  AKNKNGYHNLAKMSSKAYT-DGFYYVPRIDKEVIREY-KEDIIVLTGNLYGEVPSKILNL 425

Query: 163  SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLS 221
              + AE+ L+ +K+ FGD LY+ + RH   D  R + V V+ +  H++ L+ATNN+ +  
Sbjct: 426  GEKQAEEALVWWKEEFGDDLYIEMMRHDQEDENRVNPVLVEFSKKHDVKLIATNNTYYWK 485

Query: 222  EEDYEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENT 274
            +ED  AHD+L+ V      +T + +    R      ++Y K+ S+M  +F DLP A+ N 
Sbjct: 486  QEDANAHDILLCVKDGEKQATPIGRGRGYRYGLPNTEYYFKSGSQMKKLFKDLPNAISNI 545

Query: 275  VEIARRCSFILQVHAPILPRF-------IEKECDDIQKEEENE-LRNKAVAGLEVRLAQG 326
             EI  +          +LP F        E++  D  K  EN  L++    G + R    
Sbjct: 546  QEIVDKVESFELARDVLLPAFEIPEEFLSEEDLADGGKRGENAFLKHITFEGAKKRYPD- 604

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                     +  +RL+FEL+VI    + GYFLIV DFI+ A++  + VGPGRGS AGSV 
Sbjct: 605  ------ITPEIEERLNFELSVIENTGYPGYFLIVEDFIRAAREMGVSVGPGRGSAAGSVV 658

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L IT+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV  KYG  +VAQI
Sbjct: 659  AYCLWITNIDPMKYDLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIKKYGANQVAQI 718

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD---SRFREARL 503
            IT+G++ AK+++RD  R L +P    DR+ KLIPN       L A+ D    S+FR   +
Sbjct: 719  ITYGTMAAKSSIRDTARVLDLPLMDSDRIAKLIPNTKLG--KLFAMDDKTIKSKFRGDEI 776

Query: 504  ADPSVDRLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                ++ L  IS+              LEG  R+   HA G++I    ++  VP+     
Sbjct: 777  E--KINELFNISEGDDLEAETVNQARILEGSVRNTGIHACGVIITPGDITNYVPVSVAKD 834

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
            SDL VTQF+   +E AGL+K DFLGLKTLTL++ ++  +  R  + +D    P DD ETY
Sbjct: 835  SDLYVTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKIVKGRHDIDLDPDSFPLDDEETY 894

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T+GIFQ ES GM++ ++ ++P   +D+IA+ +LYRPGP++ I  +  RK+G E
Sbjct: 895  KLFQRGETVGIFQYESPGMQKHMQSLKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGDE 954

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +I    P ++  L+ET G+ +YQEQVM ++Q L+G+S  EAD+LR+AMGKK+   + + K
Sbjct: 955  EISYDLPEMEEYLEETYGITVYQEQVMLLSQKLAGFSKGEADMLRKAMGKKLVALLAQLK 1014

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI G ++ G    +   I++    FA Y FNKSH+  YA I+YQTA++K HYP E++A
Sbjct: 1015 PKFIEGGNEKGHPAEVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMA 1074

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTT 848
            A ++  M++++ +  F ++ ++  + ++ P VN     F V  DN + + + AIKGVG+ 
Sbjct: 1075 AVLSNNMNDIKSVTFFMEECKRMKLNVLGPDVNESYYKFSVNKDNAVRFGMGAIKGVGSG 1134

Query: 849  TARHIMEASADK--PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS-RMQLLQS- 904
                I+E    K  P+ S+ D   R+D +  N++  E+L  AG  D FG + R Q     
Sbjct: 1135 AVATIVENRKTKEGPYRSIFDMAKRIDLRSANKKAFENLALAGGFDGFGNTHRAQYFHDD 1194

Query: 905  ------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
                  L+ + KYAQ  ++++ +   ++F         +  +       +  +   E+ V
Sbjct: 1195 GNGMSFLEKVVKYAQKFQESQNSSQVSLFGEASDVQIPEPEVPGCEEWGTMEKLRREKEV 1254

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            +G Y SGHPLD +K  +         +   + ++    + L  +VV  Q + ++ G   G
Sbjct: 1255 VGIYISGHPLDDFKIEMSYFSNGKLSDCRDLESVVNRELTLGCVVVDVQHRVSKNGK--G 1312

Query: 1017 WVTFS 1021
            W  F+
Sbjct: 1313 WAIFT 1317


>gi|227540116|ref|ZP_03970165.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
            33300]
 gi|227239977|gb|EEI89992.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
            33300]
          Length = 1474

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 357/1104 (32%), Positives = 573/1104 (51%), Gaps = 102/1104 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            F HL  HS +S+L+  +S+  ++D    ++ PA+A+TD  N+  A  F  +         
Sbjct: 259  FAHLHNHSQFSVLQSTISIGGLVDAAVKNKMPAVALTDHGNMMGAFHFVSRVLGHNKDAE 318

Query: 67   -----------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                             I+PI+GC+  I  +D+L  + +          +V L     GY
Sbjct: 319  TKNQELIDNGEAPTETIIKPIVGCEFFI-CEDHLDKSRKDNGY-----QVVFLAKNKNGY 372

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L ++ S  Y   +G   V      + E   E +I+L+G   G I           AE+
Sbjct: 373  HNLAKMSSVAYT--KGFYYVPRIDKKVVEQYKEDIIVLSGNLQGEIPNKILNIGENQAEE 430

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             L+ +K+ FG+  Y+ + RH   D  R ++ +V LA  H + ++ TNN+ ++++ D  AH
Sbjct: 431  ALIWWKEQFGEDFYIEVMRHGQEDENRVNETLVSLARRHGVKVIGTNNTYYVNKADAHAH 490

Query: 229  DVLMAVAHSTVVSQ-KDRPR------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            D+L+ V     +S  K R R         ++Y K+  EM  +F+DLPEA+ N  EI  + 
Sbjct: 491  DILLCVKDGEKLSTPKGRGRGFRFGLPNQEYYFKSAPEMKKVFADLPEAIVNIQEIIDKV 550

Query: 282  SFILQVHAPILPRF-------IEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIAKGYH 333
                     +LP+F       ++++ +D  K  EN+ L +    G E R A+        
Sbjct: 551  EIFKLNRDVLLPKFEIPEQFQVQEDNEDGGKRGENKYLAHLTYVGAEKRYAE-------I 603

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              D R+RLDFEL  I +  + GYFLIV DFI  A+   + VGPGRGS AGS  AY L IT
Sbjct: 604  TDDIRERLDFELATIEKTGYPGYFLIVQDFIAEARNMGVSVGPGRGSAAGSAVAYCLGIT 663

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            +IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V++YV +KYG  +VAQIIT+G++ 
Sbjct: 664  NIDPIQYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMQYVIDKYGASQVAQIITYGTMA 723

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLADP--SVD 509
            AK++++D  R L +P ++ + + KLIPN     + L  I   D+   +EA  A+   +V 
Sbjct: 724  AKSSIKDTARVLDLPLAEANEIAKLIPN-----LKLSKIFNMDEKALKEALRAEELEAVH 778

Query: 510  RLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +L+ ++               LEG  R+   HA G++I    ++  VP+     SDL VT
Sbjct: 779  KLISLADGAGLEAETIKQARVLEGSMRNTGIHACGVIITPDDITNFVPVSLAKDSDLYVT 838

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTK 615
            QF+   +E AGL+K DFLGLKTLTL++ ++  +  R  + +D    P DD  TY L    
Sbjct: 839  QFDNSVVESAGLLKMDFLGLKTLTLIKDTVANVKLRHNLDLDPDNFPIDDQLTYELFQRG 898

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
             T+G+FQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RK+G E IV   
Sbjct: 899  ETIGVFQYESPGMQKHMKDLKPTVFADLIAMNALYRPGPMEYIPSFIKRKHGIEPIVYDL 958

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               +  LKET G+ +YQEQVM ++Q L+G+S  +ADVLR+AMGKK K  +DK K +F++ 
Sbjct: 959  DACEEYLKETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKQKAVLDKMKPKFVAQ 1018

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A + G +  +   I+     FA Y FNKSH+  YA ++YQTA++K H+P E++AA ++  
Sbjct: 1019 AVEKGHNAKVLEKIWTDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHFPAEYMAAVLSNN 1078

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIM 854
            M++++++  F ++ R+  ++++ P VN     F V D   I + + A+KGVG      I+
Sbjct: 1079 MNDIKQVTFFMEECRRMGLEVLGPDVNESHYKFTVNDRGAIRFGMGAVKGVGAGAVDTIV 1138

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS-RMQLLQ-------SLD 906
            +     P+ S+ D   R+D +  N++  ESL +AG  D F  + R Q           L+
Sbjct: 1139 QTREGNPYKSVFDMAKRIDLRAANKKAFESLAYAGGFDSFKDTHRAQYFHVDGDNSTGLE 1198

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
               K+ Q  ++N ++   ++F         +  L          + + E+ V+G Y + H
Sbjct: 1199 KAVKFGQRHKENESSAQASLFGGGGSAELPEPVLAPCPQWGLIEKLKYEKDVIGIYLTSH 1258

Query: 967  PLDVYK--------------PILRKMGIKGYEESV----ATIRGNNIRLAAMVVSKQQKK 1008
            PLD YK               ++ K+     EE V      I+   + +  ++ +   + 
Sbjct: 1259 PLDNYKFEIKHFCQNNVSELQLINKVKASEVEEDVLLEFNKIKNKEVIIGGIIAAANHRV 1318

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            ++ G   G +   + +  +E   F
Sbjct: 1319 SKNGKPFGILVIEDYSDSFEMMVF 1342


>gi|320333087|ref|YP_004169798.1| DNA polymerase III subunit alpha [Deinococcus maricopensis DSM 21211]
 gi|319754376|gb|ADV66133.1| DNA polymerase III, alpha subunit [Deinococcus maricopensis DSM
            21211]
          Length = 1332

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 308/670 (45%), Positives = 428/670 (63%), Gaps = 36/670 (5%)

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            + A A   HA    +R ++EL+VI  M F  YFLIVAD+I WAK + I VGPGRGSGAGS
Sbjct: 460  ESACAHHRHALVLLRRAEYELSVINNMGFPDYFLIVADYINWAKDHGISVGPGRGSGAGS 519

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            + AYA+ IT++DPL F LLFERFLNPDR+SMPDFDIDF   RR EVI YVQ KYG ++VA
Sbjct: 520  LVAYAIRITNLDPLEFELLFERFLNPDRISMPDFDIDFNDARRGEVITYVQQKYGDDKVA 579

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-----------QAIA 493
            QI TFG++ +KA L+DV R + + Y++VD++ KLIP       SL           Q + 
Sbjct: 580  QIATFGTMASKACLKDVARVMGLEYAKVDKVSKLIPIKFGKSYSLEQARESVPDIQQMLD 639

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            +D++ REA           E +QKLEGL RHAS HAAG+VIG   L+ LVP+ RD   + 
Sbjct: 640  EDAQLREA----------YEFAQKLEGLTRHASVHAAGVVIGKTQLTDLVPVMRDTSGEG 689

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLL 612
             V Q++MK +E  GLIK DFLGL+TL+ L ++   + + +G++VD   IPFDD  T+ LL
Sbjct: 690  MVCQYDMKAVEDIGLIKMDFLGLRTLSFLDEAKRIMRESKGIEVDFDAIPFDDEATFDLL 749

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T G+FQLE +G+  A   ++P  + DIIAL +LYRPGP++NI  Y  R +G E++ 
Sbjct: 750  SRGDTKGVFQLEGAGIADASRRLKPRRLADIIALSALYRPGPMENIPTYVRRHHGLEQVD 809

Query: 673  SIHP-------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             +          ++ +L ET G+ +YQEQ+MQIA  ++G+SL  AD+LRRAMGKK  EEM
Sbjct: 810  YVRDGFPNSAQWLEKILAETYGIPVYQEQIMQIASEVAGFSLGGADLLRRAMGKKDAEEM 869

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             +Q++ F+ GA  NG+ K     +F+LL  FA+YGFNKSH+AAY VI+YQTAW+K ++PV
Sbjct: 870  KRQRQIFVDGAEGNGVPKDEGNKLFDLLDAFANYGFNKSHSAAYGVITYQTAWLKANHPV 929

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+AA +T+E  + +K+ ++  DAR+  + ++PP +N    DFKV    IY+ L AIKG+
Sbjct: 930  EFMAALLTVERRDSDKVAEYASDARKMGVTVLPPDINRSGADFKVVGQDIYFGLYAIKGL 989

Query: 846  GTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            G      I+ E      F SL DFC+R+D+K  NR+ LESL+ +GA D FG  R QLL S
Sbjct: 990  GENAVLRILDERERGGRFRSLADFCARIDNKTCNRKGLESLIKSGAFDAFG-ERQQLLSS 1048

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFY 962
            L++   +AQ       +  + +F   +     K+   + +VE  S   +   E+  LG Y
Sbjct: 1049 LEDAIAWAQGAAAMLNSGMDALFGMAETAPEPKL---RANVEPLSELAKLALEKEALGLY 1105

Query: 963  FSGHPLDVYK 972
             SGHPL+ ++
Sbjct: 1106 ISGHPLEQHE 1115



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 147/302 (48%), Gaps = 24/302 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILD---KIAADQ-QPAIAITDTNNLFSALEFSQKACAAG 66
           F HL  H+ YSLL+GA  L ++L    ++  D   PA+A+TD  N+  A+ F   A   G
Sbjct: 24  FAHLHQHTQYSLLDGAAKLKDLLKWAKEVTPDGCTPALAMTDHGNMHGAVHFYNYATGMG 83

Query: 67  IQPIIGCQ-LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           ++PIIG +   +      +   +G+     +  + LL    EGYQ L  L SR Y  +  
Sbjct: 84  VKPIIGYEAYVVPGVGTRRERTRGQDGEKGIFHLTLLARDFEGYQNLCRLSSRGYT-EGY 142

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
               RI    LQE   +G+I  +G     + +         A++RL+ ++ LFG+  ++ 
Sbjct: 143 YYKPRIDHELLQE-HHKGVIAFSGCLGSEVQQLLLQGREADAKQRLMWYRDLFGENYFIE 201

Query: 186 LQRHRGYDRYRESQVVQLAYTHELP--LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
           +Q H   ++ R + +++ A+  EL   +VATN+  ++ + D  AH+ L+A+     ++ +
Sbjct: 202 IQDHGLPEQKRNNPILR-AWAQELGIGMVATNDGHYVKKSDATAHETLLAIQTKATLADE 260

Query: 244 DRPRVTPDH-YLKNRSEM-----VSIFSDLPEALENTVEIARRCSFILQV------HAPI 291
           +R +   D  Y+KN  EM     VS + + P   +NT  IA  C+  L V        P 
Sbjct: 261 NRFKFPCDEFYVKNLEEMQAALPVSEWGEEP--FDNTAMIADLCNVDLPVGKKRVYQMPA 318

Query: 292 LP 293
           LP
Sbjct: 319 LP 320


>gi|319953453|ref|YP_004164720.1| DNA polymerase iii, alpha subunit [Cellulophaga algicola DSM 14237]
 gi|319422113|gb|ADV49222.1| DNA polymerase III, alpha subunit [Cellulophaga algicola DSM 14237]
          Length = 1479

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 364/1098 (33%), Positives = 569/1098 (51%), Gaps = 102/1098 (9%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ------ 60
            ++ +F HL  H+ +S+L+  +S+  ++   A  + PA+A+TD  N+  A  F        
Sbjct: 257  ETANFSHLHNHTQFSILQSTISIPALISAAAKAKMPAVAMTDHANMMGAFHFVSGVINHN 316

Query: 61   --------------KACAAGI------------------QPIIGCQLDIDMQDNLKMTNQ 88
                          +A   G                    PIIGC+  +  +D+   TN 
Sbjct: 317  KGVVSRNEENLIRFEATKNGTLKEGEEALEELPEPEIEITPIIGCEFQV-CEDH---TN- 371

Query: 89   GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLT 148
             K+       IV+L  T +GY  L ++ S  ++   GK  V      + E   E +I+LT
Sbjct: 372  -KSQKDNGYQIVMLAKTKKGYLNLAKMSSIAFV--SGKYYVPRIDRKVVEQYKEDIIVLT 428

Query: 149  GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTH 207
            G   G +           AE+ LL +K+ FG  LY+ + RH   D  R +QV +Q A  H
Sbjct: 429  GNLYGEVPSKVLNVGENQAEEALLWWKETFGADLYIEIMRHGQEDEDRANQVLIQFAKKH 488

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEM 260
            ++ L+ATNN+ ++ +E+  AHD+L+ V      +T + +    R      ++Y K+  +M
Sbjct: 489  DVKLLATNNTYYVDKENAHAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSSDQM 548

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILP--------RFIEKECDDIQKEEENELR 312
              +F D+PEA+ N  E+  +          +LP        +F E + D  ++ E   LR
Sbjct: 549  KELFKDIPEAIINIQEVVDKVETFTLARDVLLPAFDIPEEFQFAEDKLDKGKRGENKFLR 608

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            +    G + R  +   A         +RLDFEL VI +  + GYFLIV DFI+ A+  ++
Sbjct: 609  HITYEGAKKRYGEITPA-------IDERLDFELKVIEKTGYPGYFLIVEDFIRAARAMDV 661

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS  AY L IT++DP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ 
Sbjct: 662  SVGPGRGSAAGSAVAYCLWITNLDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMD 721

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN--DPAHPVSLQ 490
            YV NKYG  +VAQIIT+G++ AK+A+RD  RAL +P    DR+ KLIP+       + + 
Sbjct: 722  YVINKYGANQVAQIITYGTMAAKSAIRDTARALDLPLQDSDRMAKLIPDMSKLKKIIGVD 781

Query: 491  AIADDSRFREARLADPSVDRLLEISQK-------------LEGLYRHASTHAAGIVIGDR 537
                 S+FR   L    ++ LL IS+              LEG  R+   HA G++I   
Sbjct: 782  EKILKSKFRAEDLI--KINELLAISEGDGLEAETLNQAYILEGSVRNTGIHACGVIITPD 839

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKV 596
             +++ VP+     S++  TQF+   +E AGL+K DFLGLKTLTL++ ++  + A+ GV +
Sbjct: 840  DITKFVPVALAKDSEMYCTQFDNSVVEDAGLLKMDFLGLKTLTLIKDTVKIVKAKHGVTL 899

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D    P DD +TY L     T+G+FQ ES GM++ +  ++P    D+IA+ +LYRPGP++
Sbjct: 900  DPENFPLDDVKTYELFQRGETVGVFQYESPGMQKHMRALKPTVFADLIAMNALYRPGPME 959

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I  +  RK+G E+IV      +  L ET G+ +YQEQVM ++Q L+ ++  EADVLR+A
Sbjct: 960  YIPSFIARKHGTEEIVYDLDANEEYLAETYGITVYQEQVMLLSQKLADFTKGEADVLRKA 1019

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK K  +DK K +FI  AS  G +      I++    FA Y FNKSH+  YA I+YQT
Sbjct: 1020 MGKKQKYVLDKMKPKFIEQASAKGHAADKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQT 1079

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRI 835
            A+ K HYP E++AA ++  M++++++  F ++ ++  + ++ P VN     F V D   +
Sbjct: 1080 AYCKAHYPAEYMAAVLSNNMNDIKQVTFFMEECKRMGLDVLGPDVNESYYKFAVNDAGAV 1139

Query: 836  YYSLAAIKGVGTTTARHIMEASADK--PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             + + A+KGVG      I+E   D+  PF S+ DF  R+D +  N++  ESL  AG  D 
Sbjct: 1140 RFGMGAVKGVGRGAVETIVEHRKDEEGPFKSVFDFAKRIDLRAANKKAFESLAVAGGFDS 1199

Query: 894  FGYS-RMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            FG + R Q   +       L+   KY    +++  +   ++F         +  +     
Sbjct: 1200 FGDTHRAQYFHAEGDGVTFLEKTIKYGAKFQESENSSQVSLFGEASDVQIPEPEVPPCEE 1259

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVS 1003
              +  +   E+ V+G Y SGHPLD +K  ++            + +I    +  A ++  
Sbjct: 1260 WGTMEKLRREKEVVGIYISGHPLDDFKSEVKSFCNASLSNLNDLESIVNREVSFAGVIAD 1319

Query: 1004 KQQKKTRKGSRIGWVTFS 1021
             Q + ++ G   GW  F+
Sbjct: 1320 VQHRVSKNGK--GWAMFT 1335


>gi|308235821|ref|ZP_07666558.1| DNA polymerase III subunit alpha [Gardnerella vaginalis ATCC 14018]
 gi|311114403|ref|YP_003985624.1| DNA-directed DNA polymerase III subunit alpha [Gardnerella vaginalis
            ATCC 14019]
 gi|310945897|gb|ADP38601.1| DNA-directed DNA polymerase III alpha subunit [Gardnerella vaginalis
            ATCC 14019]
          Length = 1183

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 358/1066 (33%), Positives = 571/1066 (53%), Gaps = 56/1066 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  H+ YSLL+GA  + +++ +      PA+AITD  N+  A E    A  AGI+P
Sbjct: 7    NFVHLHNHTHYSLLDGASKIPDLVARAKELGMPAVAITDHGNMHGAYEMWSTAVKAGIKP 66

Query: 70   IIGCQL----DIDMQDNLKM-------TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            IIG +     +   QD  ++        +   +    +  + +     EG   L++  S 
Sbjct: 67   IIGIEAYVTPETARQDKSRVHWGTEAQRSDDVSGGGLITHMTMWAENDEGLTNLLKASSI 126

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L  +  +  R+    L    ++G+I  +G  SG I           A +    F+ +F
Sbjct: 127  ANLEGRVMRYPRMDKDVLSRY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIF 185

Query: 179  G-DRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            G D  ++ L  H      R ++ ++++A     PL+ATN+  ++ EED EA D ++ +  
Sbjct: 186  GRDNFFIELMNHGLSIETRVTKDLLEIAKRLNAPLLATNDLHYVHEEDREAQDAMLCINS 245

Query: 237  STVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ--VHAPILP 293
             + +   DR +     +YLK+  +M  +F + PEA +NT+EIARRC+ +         +P
Sbjct: 246  GSRLDDPDRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGEDGAFMP 305

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            +F   +C +   E    L+ K   GLE R             +  ++ D+E  VI +M+F
Sbjct: 306  QF---DCPEGWDETSLFLK-KVEEGLERRYNNNV------PMEVLKQADYECGVICQMQF 355

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++  L+FERFLNP+R+
Sbjct: 356  CGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLNPERV 415

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            S+PD D+DF  D R +V+ YV  KYG ++VAQ + +G+++ K AL+D  R +   +S  +
Sbjct: 416  SLPDIDVDFDPDGRAKVLEYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGE 475

Query: 474  RLCKLIPNDP-AHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRH 524
            ++ K++P       +S   I D+          FRE    DP   R+ E ++ +EGL R 
Sbjct: 476  KITKILPPPKNGKDMSFHDIFDEKSKRYAEAREFREMYDTDPDTKRITEEAKGIEGLIRQ 535

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
               HA   ++G  P++   P+    R+D  + T F     E  GL+K DFLGL  LT+++
Sbjct: 536  TGVHACATIMGSEPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNLTVIR 593

Query: 584  KSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             +L  +   G + +D + IP DD ETY LL    TLG+FQL+S GMR  L  ++PD   D
Sbjct: 594  DTLKNVEHNGKEPIDYTKIPLDDKETYQLLARGDTLGVFQLDSDGMRALLRTLKPDNFND 653

Query: 643  IIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLI-DPM---LKETQGVIIYQEQVM 696
            I AL++LYRPGP  +D+   Y  RKNG ++I  IHP + +P+   L ET G+I+YQEQV 
Sbjct: 654  ISALIALYRPGPMDMDSHTNYAKRKNGLQEITPIHPEVAEPLKDVLGETYGLIVYQEQVQ 713

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
              A++L+GYSL +ADVLRRAMGKK  E + K+K  F  G  ++G S+  A  ++++L  F
Sbjct: 714  SAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFKGMKEHGYSEEAAQAVWDVLVPF 773

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            + Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +  E  N +K   +  +AR+  I++
Sbjct: 774  SGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRMGIRV 833

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME--ASADKPFDSLEDFCSRVDS 874
            + P +N   +++    + + + L A++ VG      I+    S    F   +DF +RV  
Sbjct: 834  LQPDINESVLEYSAVGDVVRFGLGAVRNVGDKAVNDIISERESERGKFIDFKDFVNRVSF 893

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
              LNRR++ESL+ +GA D     R  + +  + +      +++ +     ++FA    + 
Sbjct: 894  AALNRRLVESLIKSGAFDSINPCRRAIFEICEPLIDSVISIKRRQAGGQFDLFADLDDSD 953

Query: 935  SD----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIKGYEESV 987
            SD    +I +      +   +   E+ +LG Y S HPL     +   LR+M I       
Sbjct: 954  SDLGDAQINIPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLAGLREMSIAQLLNRA 1013

Query: 988  ATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             T+  N  + LA +V S  ++ ++KG+    VT  +     +  FF
Sbjct: 1014 KTMGENQQVTLAGLVTSVDRRVSKKGNAWAIVTIEDMESSIQCMFF 1059


>gi|256396217|ref|YP_003117781.1| DNA polymerase III subunit alpha [Catenulispora acidiphila DSM 44928]
 gi|256362443|gb|ACU75940.1| DNA polymerase III, alpha subunit [Catenulispora acidiphila DSM
            44928]
          Length = 1189

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 382/1075 (35%), Positives = 577/1075 (53%), Gaps = 66/1075 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL VH+ YS+L+GA  L ++    ++   PA+A+TD  N+  A +F+++A AAGI
Sbjct: 2    SDSFVHLHVHTEYSMLDGAARLKDMFKHASSLGMPAVAMTDHGNMHGAADFTKQAMAAGI 61

Query: 68   QPIIGCQLDIDMQD--NLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELV 116
            +PI+G +  +  +   N K    G+ P      +          +      G Q L +L 
Sbjct: 62   KPILGIEAYVAPESRYNAKPVRWGQ-PHQKSDDVSGGGLYGHATIWAQNVTGLQNLTKLS 120

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            SR +     ++  R+    + E  + GL+  TG  SG +           A      +++
Sbjct: 121  SRAFTEGFARKYPRMDAELMAE-HSAGLMATTGCPSGFVQTRLRLGHFDEALAAAGQYQE 179

Query: 177  LFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +FG +  Y+ L  H G D   R RE  ++ +     +P V TN+S +   E+  AHD L+
Sbjct: 180  IFGKENFYLELMDH-GLDIETRVREG-LLDIGRKLNIPPVVTNDSHYTYREESAAHDALL 237

Query: 233  AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD--LPEALENTVEIARRCS-FILQVH 288
             +  ++ ++  DR R   D +YLK+  EM +I +D    E   NT+ IA + +   +  +
Sbjct: 238  CIQTASNIADPDRFRFGGDGYYLKSADEMRAINTDDIWQEGCRNTLAIAEKVNPEGMFAY 297

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI-AKGYHAQDYRQRLDFELNV 347
              ++PR    E  D   E++   R  A  GL  R   G    K YHA     RL+FEL+V
Sbjct: 298  RNLMPRL---EAPDGLTEDQ-WFRKLAYDGLNKRFPAGVPDEKVYHA-----RLEFELDV 348

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I  M F  YF++VADFI WAK N I VGPGRGS AGS+ A++L ITD+DP+ F LLFERF
Sbjct: 349  ILSMGFPSYFIVVADFINWAKDNGIAVGPGRGSAAGSLVAWSLGITDVDPIPFDLLFERF 408

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNPDR++ PD DIDF   RR +VIRYV  KYG ++VA I TFG ++AKAA++D  R L  
Sbjct: 409  LNPDRVTPPDIDIDFDDRRRSDVIRYVTEKYGEDKVAMIATFGRIKAKAAIKDSSRILGY 468

Query: 468  PYSQVDRLCKLIPND---PAHPVSLQAIADDSRFREAR------LADPSVDRLLEISQKL 518
            P++  DR+ K +P D    + P+S    ++  R+ EA         D  V ++++  + +
Sbjct: 469  PFAMGDRITKAMPPDVMGKSMPLSGVFDSNHPRYGEAGEIRGMYEQDADVKKVIDTGRGV 528

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R    HAAG++I    ++  VP+       + +TQF+    E+ GLIK DFLGL+ 
Sbjct: 529  EGLIRQPGVHAAGVIISPETITDHVPVMMRPADGVIITQFDYPTCEEIGLIKMDFLGLRN 588

Query: 579  LTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  +L+ +    G +++    P DD  TY LL    TLG+FQL+   +R  L  M+P
Sbjct: 589  LTIITDALNNVETTTGKRLNTLEFPLDDPLTYELLCKGDTLGVFQLDGGPLRSLLRQMRP 648

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV----IIY 691
            D  ED+ A+++LYRPGP+  ++ + Y  RKN ++ I  IHP ++  LKE  GV    IIY
Sbjct: 649  DNFEDVSAIIALYRPGPMGANSHINYAERKNNRQPITPIHPELEAPLKEVLGVSYGLIIY 708

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVM  A++L+GYSL++AD+LRRAMGKK KE +DK+   F  G + NG S      +++
Sbjct: 709  QEQVMAAARVLAGYSLAQADLLRRAMGKKKKEVLDKEYVGFEKGMADNGYSAQATKAVWD 768

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +L  FADY FNKSH+ AY  I+YQTA++K HYP E++AA +T    + ++   +  + R+
Sbjct: 769  VLVPFADYAFNKSHSVAYGFIAYQTAYLKAHYPAEYMAALLTSTATDKDRSAIYLGECRR 828

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870
              I+++PP VN     F      I + L AI+ VG      I+    A   F S  DF +
Sbjct: 829  MGIKVLPPDVNDSLHQFTPVGTDIRFGLGAIRNVGENVVTSIIATRKAKGRFTSFNDFLA 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929
            +VD    N+R +ESL+ AGA D  G+SR  L++  +        V+K      +++F   
Sbjct: 889  KVDLPVCNKRTIESLIKAGAFDSLGHSRRGLIEQHERAIDSVVDVKKQEALGQDSLFGSL 948

Query: 930  ---EKGTFSDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                +   +  I L    +E +  V    E+ +LG Y S HPL   + +L        + 
Sbjct: 949  MDGGQEAITGGIELAFSDIEWDKKVLLGFEREMLGLYVSDHPLSGVENLLASKA----DC 1004

Query: 986  SVATIRGNNIR-------LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            S+A++ G N R       +A +V    +K T++G+     +  +     E  FFP
Sbjct: 1005 SIASLTGENDRADGSIVTIAGLVAGLARKVTKQGNTWAAASVEDLEGGIETMFFP 1059


>gi|227545586|ref|ZP_03975635.1| DNA-directed DNA polymerase [Bifidobacterium longum subsp. infantis
            ATCC 55813]
 gi|227213989|gb|EEI81826.1| DNA-directed DNA polymerase [Bifidobacterium longum subsp. infantis
            ATCC 55813]
 gi|291516113|emb|CBK69729.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
            longum F8]
          Length = 1189

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 366/1073 (34%), Positives = 570/1073 (53%), Gaps = 68/1073 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++P
Sbjct: 11   NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 70

Query: 70   IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            IIG +     +   QD  ++      Q +        I  L   AE  + L+ L+    +
Sbjct: 71   IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 130

Query: 122  LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +   + +R      + + T  +G+I  +G  SG I         + A +    F+ +FG
Sbjct: 131  ANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFEEALRAAGEFQDIFG 190

Query: 180  -DRLYVNLQRHRGYDRYRESQV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
             D  ++ L  H       E+QV    + +A   + PL+ATN+S ++  ED +A D ++ +
Sbjct: 191  KDNFFIELMDH---GLTIETQVTNDLLTIAKKLDAPLLATNDSHYVHAEDAQAQDAMLCI 247

Query: 235  AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--API 291
               + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H     
Sbjct: 248  NSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAF 307

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +P+F   E  D    E +    K   GLE R        G    D  ++ D+E  VI +M
Sbjct: 308  MPKFPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQM 357

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            +F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+
Sbjct: 358  QFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPE 417

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+S+PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S 
Sbjct: 418  RVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSV 477

Query: 472  VDRLCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
             +++ K +P  PA      +SL  I D +         FRE   +DP   R+ E ++ +E
Sbjct: 478  GEKITKALP--PAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIE 535

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKT 578
            GL R    HA   ++G  P++   P+    R+D  + T F     E  GL+K DFLGL  
Sbjct: 536  GLIRQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSN 593

Query: 579  LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  +L  +   G   +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++P
Sbjct: 594  LTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKP 653

Query: 638  DCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIY 691
            D   DI AL++LYRPGP  +D+   Y  RKNG +KI  IHP ++  LK    ET G+IIY
Sbjct: 654  DNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIY 713

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  +++
Sbjct: 714  QEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWD 773

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+
Sbjct: 774  ILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARR 833

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDF 868
              IQ++ P VN    ++    + + + L AI+ VG      I+ A  + P   F +  DF
Sbjct: 834  MGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDF 892

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              RV    LNRR++ESL+ AGA D    +R  LL   +        +++ +     ++F+
Sbjct: 893  IRRVPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDLFS 952

Query: 929  HEKGTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGI 980
              +   ++      +T+      +   +   E+ +LG Y S HPL   + I   LR+M I
Sbjct: 953  DAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSI 1012

Query: 981  KGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +   T+  G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1013 AHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065


>gi|259503193|ref|ZP_05746095.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus antri
            DSM 16041]
 gi|259168850|gb|EEW53345.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus antri
            DSM 16041]
          Length = 1114

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 359/1040 (34%), Positives = 558/1040 (53%), Gaps = 71/1040 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++V L+VHSSYSLL+    + +++         A+A+TD N L+ A++F   A  AG++P
Sbjct: 2    NYVPLEVHSSYSLLQSPTRIPDLVKAAKQRGYTALALTDENVLYGAVDFYNTARQAGLKP 61

Query: 70   IIGCQLDIDMQD----NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            ++G Q+   + D     LK+T              LL     GY+ L++L +R    +Q 
Sbjct: 62   LLGLQIMASLGDVAGSQLKLT--------------LLAKNERGYRNLMDLSTRQQTTNQR 107

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-- 183
             +   I  + L  +  + +++L      P+ +    N  +     +   K++ G  LY  
Sbjct: 108  AEPATI--AELSPLLKDLVVIL------PV-QLTVINLVRQGSDWIDPLKQIAGSSLYLG 158

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +NLQ     D    + + + A    + L AT    +L+  D  A   L A+     ++  
Sbjct: 159  INLQ----LDEVERASLQRFAQAAGVLLAATTPVDYLNASDLFAAKTLQAIGQGAQLTDL 214

Query: 244  D-RPRVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            D +   T DHYL  R ++   +  + L  A+ NT  IA +C+  L+  AP+LP +     
Sbjct: 215  DAQVAATGDHYLPARQQIEQAYQQAGLAAAIANTAAIADQCNVELKFQAPVLPHYQTPHG 274

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +       + L    +AGL+ R     +A GY A DYRQRLD EL VI RM F  YFLIV
Sbjct: 275  E----APADYLHQLCLAGLKER----PVAAGYSAADYRQRLDHELAVIHRMGFDDYFLIV 326

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +A +  I   PGRGS AGS+ AYAL IT++DPL + LLFERFLNP+R  MPD D+
Sbjct: 327  WDVMNFAHRTKITTDPGRGSAAGSLVAYALAITEVDPLEYQLLFERFLNPERAQMPDIDL 386

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV++YV +KYGHERVAQIITFG+L AK  LRDV R   +   +   L   +P
Sbjct: 387  DIPDNRREEVLKYVHDKYGHERVAQIITFGTLAAKQVLRDVSRVFNLTKFETASLLDTLP 446

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
               +  +  QA+ +  R +      P + +L  ++Q+LEGL RH STHAAGIV+   PL 
Sbjct: 447  KGGSFTLE-QALGESQRLKNLLNDQPKLRQLFRVAQQLEGLPRHYSTHAAGIVLSAAPLH 505

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            ++VP+ ++    L +TQF    +E  GL+K DFLGL+ L+++  ++  + QR  +  L  
Sbjct: 506  EIVPL-QEGSEGLLMTQFPKDTVEALGLLKMDFLGLRNLSIMDNTIQMIRQRKPQFSLDQ 564

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +   D  T  L     T G+FQ ES+G+R  L  + PD  EDI+A+ +LYRPGP++NI  
Sbjct: 565  VSLADPATLRLFQRGQTDGVFQFESAGIRNVLTALHPDQFEDIVAVNALYRPGPMENITH 624

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RK G+E I      + P+L  T G+++YQEQVMQ+A  ++G++L EAD+LRRAM KK
Sbjct: 625  FIARKRGQELIQLPDQSLAPILAPTYGILVYQEQVMQLASAMAGFTLGEADLLRRAMSKK 684

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K+ MD  + +F++GA   G    +A  +F+ + +FA+YGFN+SHA AY+ ++++ A++K
Sbjct: 685  KKQTMDSMRAKFMAGAQAKGYQPALASQVFDYIDQFANYGFNRSHAVAYSKMAFEMAYLK 744

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYP EF  A +  E  NV K+++   +A++  +++  P +N     F V D +IY+ L 
Sbjct: 745  CHYPTEFYTALLNAE-SNVTKLRQHVTNAQKMGVKVNGPRINLSQAQFAVHDQQIYFGLT 803

Query: 841  AIKGVGTT-TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AIKG+     A  + E  A+ PF  + D  +R+  K     VL  L++AGA D  GY+R 
Sbjct: 804  AIKGLRRDFVADLLQEREANGPFKDIRDLINRLPDKWRKEEVLTPLIYAGACDGLGYNRA 863

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQ 956
            ++++SL N+    +            + A   G   D       S       + R   E 
Sbjct: 864  EMVESLPNLLSGIE------------LLATLPGLSGDPSLQSSISHRQEYPLTTRLAKEN 911

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK--KTRKGSR 1014
             +LG Y SGHP+  Y    R++  +     +  +R N  R+  +V + + K   T+K  R
Sbjct: 912  ELLGVYLSGHPVSQY----RQLASRLRSGRITELRPNQ-RVTLIVFTNRVKVIHTKKDHR 966

Query: 1015 -IGWVTFSEPAKEYEANFFP 1033
             + +V+ S+ +   +   FP
Sbjct: 967  PMAFVSASDESGLVDVTVFP 986


>gi|189468209|ref|ZP_03016994.1| hypothetical protein BACINT_04605 [Bacteroides intestinalis DSM
            17393]
 gi|189436473|gb|EDV05458.1| hypothetical protein BACINT_04605 [Bacteroides intestinalis DSM
            17393]
          Length = 1264

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 371/1141 (32%), Positives = 598/1141 (52%), Gaps = 126/1141 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+           
Sbjct: 4    FVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63

Query: 61   ------KACAAGIQ-----------------------------PIIGCQLDIDMQDNLKM 85
                  K   AGI+                             PIIGC++ +  +    M
Sbjct: 64   GEIKDLKKRMAGIESGEIACDDKEAELADCRAKIAEAENKLFKPIIGCEMYVARR---TM 120

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
              +   P  +   +++L    +GY  LI+LVSR +      +  R   + L++   EGLI
Sbjct: 121  DKKEGKPDQSGWHLIVLAKNEKGYHNLIKLVSRAWTKGYYMRP-RTDRNELEKY-HEGLI 178

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY---- 195
            + +    G + +    +  + AE+ +  +K LFG+  Y+ LQRHR       ++ Y    
Sbjct: 179  VCSACIGGEVPKKIINDQLEDAEEAIRWYKNLFGEDYYLELQRHRATIPRANHEAYPLQQ 238

Query: 196  -RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
               +++++ A  + + L+ +N+  F++EE  EAHD L+ ++    +   +R   T   ++
Sbjct: 239  KANAKLIEFAKKYNIKLICSNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMLYTKQEWM 298

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298
            K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P                ++ EK
Sbjct: 299  KTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTEK 358

Query: 299  ECDD----------IQKEEENELRNKAVAGLE----VRLAQGAIAKGYH----------- 333
            +  D          +  EE+ + + K + G E    ++L    +AK              
Sbjct: 359  DLFDEFTQDENGNVVLSEEDAKAKIKRLGGYEKLYRIKLEADYLAKLTFDGAKIFYGDPL 418

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
            +++  +RL FEL+++  M F GYFLIV DFI   +   + +GPGRGS AGS  AY L IT
Sbjct: 419  SEEVMERLKFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAVAYCLQIT 478

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
             IDP+++ LLFERFLNPDR+S+PD DIDF  D R EV+R+V  KYG E+VA IIT+G++ 
Sbjct: 479  KIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTQKYGQEKVAHIITYGTMA 538

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDSRFREARLA--DPSVDR 510
             K A++DV R  ++P S+ DRL KL+P+  P   ++L+   D     +A  A  DP V  
Sbjct: 539  TKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIDYVPELQAAEASPDPLVRD 598

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKA 566
             L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE  
Sbjct: 599  TLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIEDT 658

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GLIK DFLGLKTL++++++++ +   RG+ +++  +P DD  TY L +   T+G FQ ES
Sbjct: 659  GLIKMDFLGLKTLSIIKEAVENVRLHRGLALNIDKVPIDDPATYKLYSDGRTIGTFQFES 718

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
            +GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK+T
Sbjct: 719  AGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLKDT 778

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  KNG    +
Sbjct: 779  YGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDPKV 838

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I K 
Sbjct: 839  LEKIWGDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSNITDITKL 898

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFD 863
              + +   I+++ P VN   + F V  +  I + L A+KGVG     +IME    +  F 
Sbjct: 899  MDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVLNIMEEREKNGSFK 958

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS--------LDNIQKYAQWV 915
             + DF  RV+    N++ LE L  AG  D F   R +   +        L+ + +Y    
Sbjct: 959  GIFDFVQRVNLTACNKKNLECLALAGGFDEFPELRREQYFAVNSKNEVFLETLVRYGNRY 1018

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYKP 973
            + ++     ++F  +     D  T E    E  S   R   E+ ++G Y S HPLD Y  
Sbjct: 1019 QADQAAAANSLFGGD--NVVDIATPEIPEAERWSDLDRLNKERDLVGIYLSAHPLDEYSV 1076

Query: 974  ILRKM-GIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +L+ +   +  E E    + G  I +  +V S ++  ++ G+  G     + +   E  F
Sbjct: 1077 VLQHVCNTRMAELEDKTALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAELPF 1136

Query: 1032 F 1032
            F
Sbjct: 1137 F 1137


>gi|327402957|ref|YP_004343795.1| DNA polymerase III subunit alpha [Fluviicola taffensis DSM 16823]
 gi|327318465|gb|AEA42957.1| DNA polymerase III, alpha subunit [Fluviicola taffensis DSM 16823]
          Length = 1463

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 365/1095 (33%), Positives = 578/1095 (52%), Gaps = 95/1095 (8%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL  H+ +++L+  +++  ++ +      PA+A+TD  N+ +A  F +    AG
Sbjct: 254  KDVPFVHLHNHTQFTILQSTMNVKGLVKQAVKHNMPAVALTDIGNMMAAFHFEK--AIAG 311

Query: 67   IQ-----------------------PIIGCQ-------LDIDMQDNLKMTNQGKTPFPTV 96
            I                        PIIGC+       LD  ++DN  +           
Sbjct: 312  INSEIEAERKEAEENGQTISKKPLLPIIGCEMYVCRDRLDKSVKDNGSL----------- 360

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV-RICLSWLQEIGTEGLIMLTGGSSGPI 155
              +V +    +GY  LI+L S  +   +G   V RI  S +++   E LI+LTGG +G I
Sbjct: 361  --VVFIAKNKKGYHNLIKLASISHT--EGMYYVPRIDKSAVEQY-HEDLIVLTGGLNGEI 415

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVAT 214
                     + AE+ L+ +K LFG+ LYV + RH   D  R  + +++LA  HE+ LVAT
Sbjct: 416  PSLLLNVGEKQAEEALVWWKNLFGEDLYVEIMRHGQEDENRVNASLIKLAQKHEVKLVAT 475

Query: 215  NNSLFLSEEDYEAHDVLMAVAHST-VVSQKDRPR------VTPDHYLKNRSEMVSIFSDL 267
            NN+ + S ED   HD+L+ V     V + K + R         ++Y K+  EM  +F DL
Sbjct: 476  NNTFYGSREDANTHDILLCVRDGEQVTTPKGKGRNFRFGLENEEYYFKSADEMKELFLDL 535

Query: 268  PEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
            PEA+E+  EI  +          +LP F I  E  D Q   +   R +  A L     +G
Sbjct: 536  PEAIESISEILGKIEHYPLAREVLLPAFDIPDEFKDPQDAIDGGKRGEN-AFLRHLTYEG 594

Query: 327  AIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            A AK Y     + R RLDFEL  + +  + GYFLIV DF Q A+   + VGPGRGS AGS
Sbjct: 595  A-AKRYPEITDEIRDRLDFELATVEKTGYPGYFLIVQDFCQAARDMGVAVGPGRGSAAGS 653

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
              AY   IT++DP+ + LLFERFLNPDR+SMPD DIDF  + R  VI +V  KYG  +VA
Sbjct: 654  AVAYCTGITNVDPIAYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVIDWVIEKYGSNQVA 713

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA--------HPVSLQAIA--- 493
            QIIT+G++ AK+++RD GR L +P    + L KLIP++           P   + +A   
Sbjct: 714  QIITYGTMAAKSSIRDAGRVLDLPLMDTNLLAKLIPDNFTLDAIFNWEEPKLAEKLANSP 773

Query: 494  -DDSRFREARLADPSVD---RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             D +  +E R      D   ++L  +Q++EG  R+   HA G++I    ++  VP+    
Sbjct: 774  QDLANVQELRAVSKGTDMRAQVLRQAQRIEGSVRNTGIHACGVIITPDDITNFVPVSLAK 833

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET 608
             + +  TQF+    E+AGL+K DFLGLKTLTL++ ++  + +R  + +D    P DD +T
Sbjct: 834  DTGMWCTQFDNSVAEEAGLLKMDFLGLKTLTLIKDAVKNVKKRHDIDLDPDTFPIDDEKT 893

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y L     T+GIFQ ES GM++ +  ++P    D+IA+ +LYRPGP++ I  +  RKNG+
Sbjct: 894  YELFQRGETVGIFQYESPGMQKYMRELRPSVFADLIAMNALYRPGPLEYIPDFIKRKNGE 953

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            ++I       +  LKET G+ +YQEQVM ++Q L+G+S  +ADVLR+AMGKK +  +DK 
Sbjct: 954  QEIKYDLDACEEFLKETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKQRYILDKM 1013

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K +F+    + G    +   I++    FA Y FNKSH+  YA I+YQTA++K +YP EF+
Sbjct: 1014 KPQFVEQGQERGHDPVVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKANYPAEFM 1073

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGT 847
            A+ ++  ++++ ++  F ++ R+  I+++ P VN    +F V  +  I + L  IKG+G+
Sbjct: 1074 ASVLSNNLNDIAQVSFFMEECRRMGIEVLGPDVNESAYEFTVNQHGAIRFGLGGIKGLGS 1133

Query: 848  TTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL--- 902
                +I+E   ++  F S+ +   R++ + +N++ +ES+ +AG  D F G  R Q     
Sbjct: 1134 GPVENIIENRQEEGSFQSIFEMTKRLNLRIVNKKAMESMAYAGCFDSFKGAHRAQYFALD 1193

Query: 903  ----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
                  ++N  KY   ++ N  +   ++F         + T+      N   +   E+ V
Sbjct: 1194 AGGKTFIENALKYGNSLQDNENSAQVSMFGESADVKMPEPTIPNSEEWNLLYKLNREKEV 1253

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIR---GNNIRLAAMVVSKQQKKTRKGSRI 1015
            +G + SGHPLD ++  +      G  E ++ ++   G +  + A++   Q   T+ G   
Sbjct: 1254 VGIFISGHPLDDFRVEIEAF-CNGNVELLSNVKNHLGRDFTIPAIITDAQHLTTKTGKPF 1312

Query: 1016 GWV---TFSEPAKEY 1027
            G +    +S   K+Y
Sbjct: 1313 GLILIEDYSNTHKQY 1327


>gi|305665420|ref|YP_003861707.1| DNA polymerase III subunit alpha [Maribacter sp. HTCC2170]
 gi|88710175|gb|EAR02407.1| DNA polymerase III alpha subunit [Maribacter sp. HTCC2170]
          Length = 1478

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 362/1099 (32%), Positives = 562/1099 (51%), Gaps = 113/1099 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------------ 58
            F HL  H+ +S+L+  +S+ +++     +  PA+A+TD  N+  A  F            
Sbjct: 261  FAHLHNHTQFSILQSTISVADLVQATVKNNMPAVAMTDHANMMGAFHFVNGVINHNKGVI 320

Query: 59   -----SQKACAAG---------------------IQPIIGCQLDI--DMQDNLKMTNQGK 90
                  QK   A                      I PI+GC+  +  D  D  +  N  +
Sbjct: 321  SRNEEKQKRYEATQNGTLEEGQEPLEELPTLEKEITPIVGCEFQVCEDHTDKTQKDNGYQ 380

Query: 91   TPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGG 150
                    IV+L     GY  L ++ S  ++   GK  V      + E   E +I+LTG 
Sbjct: 381  --------IVMLAKNKNGYHNLAKMSSIAFV--DGKYYVPRIDKRIIEQYKEDVIVLTGN 430

Query: 151  SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHEL 209
              G +         + AE  L+ +K+ FGD LY+ L RH   D  R +QV +Q A  + +
Sbjct: 431  LYGEVPSKVLNVGEKQAEDALIWWKETFGDDLYIELMRHNQEDETRVNQVLIQFAKKYNI 490

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVS 262
             L+A+NN+ +  +E+  AHD+L+ V      +T + +    R      ++Y K+  EM  
Sbjct: 491  KLIASNNTYYTEKENANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSSEEMKE 550

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILP--------RFIEKECDDIQKEEENELRNK 314
            +F D+PEA+ N  E+  +          +LP        +F E   D  ++ E   LR+ 
Sbjct: 551  LFKDIPEAITNIQEVIDKVETYTLARDVLLPAFDIPKEFQFEEDRADGGKRGENKYLRHI 610

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
               G + R  +          +  +RLDFEL VI    + GYFLIV DFI+ A+  N+ V
Sbjct: 611  TYEGAKKRYEE-------ITPEIDERLDFELKVIENTGYPGYFLIVEDFIRAARDMNVSV 663

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
            GPGRGS AGS  AY L IT++DP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV
Sbjct: 664  GPGRGSAAGSAVAYCLWITNLDPIKYDLLFERFLNPDRISMPDIDIDFDDEGRGRVMDYV 723

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI-- 492
             +KYG  +VAQIIT+G++ AK+++RD  RAL +P    DR+ KLIPN       L+ I  
Sbjct: 724  IDKYGSNQVAQIITYGTMAAKSSIRDTARALDLPLGDADRMAKLIPN----MSKLKKIIG 779

Query: 493  ADD----SRFREARLADPSVDRLLEISQK-------------LEGLYRHASTHAAGIVIG 535
             DD    S+F    L    V+ LL I++              LEG  R+   HA G++I 
Sbjct: 780  VDDAVLKSKFNSEELL--KVNELLNIAEGEGLESETLNQAYVLEGSVRNTGIHACGVIIT 837

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGV 594
               +++ VP+     S++  TQF+   +E AGL+K DFLGLKTLTL++ ++  + A+ G+
Sbjct: 838  PDDITKFVPVALAKDSEMYCTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKIVKAKHGI 897

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            ++D    P DD +TY L     T+G+FQ ES GM++ +  ++P    D+IA+ +LYRPGP
Sbjct: 898  ELDPENFPLDDEKTYELFQRGETVGVFQYESPGMQKHMRSLKPTVFADLIAMNALYRPGP 957

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            ++ I  +  RK+G E+IV      +  L ET G+ +YQEQVM ++Q L+ ++  EADVLR
Sbjct: 958  MEYIPSFIARKHGTEEIVYDLDACEEYLAETYGITVYQEQVMLLSQKLADFTKGEADVLR 1017

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +AMGKK K  +DK K +FI  AS  G +      I++    FA Y FNKSH+  YA I+Y
Sbjct: 1018 KAMGKKQKHVLDKMKPKFIEKASAKGHAVDKLEKIWKDWEAFAAYAFNKSHSTCYAWIAY 1077

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833
            QTA+ K HYP E++AA ++  M++++++  F ++ ++  ++++ P VN     F V  +N
Sbjct: 1078 QTAYCKAHYPAEYMAAVLSNNMNDIKQVTFFMEECKRMGLEVLGPDVNESYYKFAVNQNN 1137

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             + + + AIKGVG      I+E   ++ P+ S+ D   R+D +  N++  ESL  AG  D
Sbjct: 1138 AVRFGMGAIKGVGRGAVETIVENRKEEGPYKSVFDMAKRIDLRASNKKAFESLAVAGGFD 1197

Query: 893  CFGYS-RMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
             FG + R Q   +       L+ + K     ++N+ +   ++F         +  +    
Sbjct: 1198 SFGATHRAQYFHTEGDGVTFLEKVIKSGSKYQENKNSSQMDMFGGMSEAQIPEPVVPPCE 1257

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM--GIKGYEESVATIRGNNIRLAAMVV 1002
               +  +   E+ V+G Y SGHPLD +K  +     G       +       I  A ++ 
Sbjct: 1258 EWGTMEKLRREKEVVGIYISGHPLDDFKSEINAFTNGTISCFTDLPKYVNREISFAGVIT 1317

Query: 1003 SKQQKKTRKGSRIGWVTFS 1021
              Q +  + G   GW  F+
Sbjct: 1318 DVQHRIAKNGK--GWALFT 1334


>gi|23336668|ref|ZP_00121872.1| COG0587: DNA polymerase III, alpha subunit [Bifidobacterium longum
            DJO10A]
          Length = 1189

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 366/1073 (34%), Positives = 569/1073 (53%), Gaps = 68/1073 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++P
Sbjct: 11   NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 70

Query: 70   IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            IIG +     +   QD  ++      Q +        I  L   AE  + L+ L+    +
Sbjct: 71   IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 130

Query: 122  LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +   + +R      + + T  +G+I  +G  SG I           A +    F+ +FG
Sbjct: 131  ANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 190

Query: 180  -DRLYVNLQRHRGYDRYRESQV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
             D  ++ L  H       E+QV    + +A   + PL+ATN+S ++  ED +A D ++ +
Sbjct: 191  KDNFFIELMDH---GLTIETQVTNDLLTIAKKLDAPLLATNDSHYVHAEDAQAQDAMLCI 247

Query: 235  AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--API 291
               + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H     
Sbjct: 248  NSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAF 307

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +P+F   E  D    E +    K   GLE R        G    D  ++ D+E  VI +M
Sbjct: 308  MPKFPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQM 357

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            +F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+
Sbjct: 358  QFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPE 417

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+S+PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S 
Sbjct: 418  RVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSV 477

Query: 472  VDRLCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
             +++ K +P  PA      +SL  I D +         FRE   +DP   R+ E ++ +E
Sbjct: 478  GEKITKALP--PAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIE 535

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKT 578
            GL R    HA   ++G  P++   P+    R+D  + T F     E  GL+K DFLGL  
Sbjct: 536  GLIRQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSN 593

Query: 579  LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  +L  +   G   +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++P
Sbjct: 594  LTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKP 653

Query: 638  DCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIY 691
            D   DI AL++LYRPGP  +D+   Y  RKNG +KI  IHP ++  LK    ET G+IIY
Sbjct: 654  DNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIY 713

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  +++
Sbjct: 714  QEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWD 773

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+
Sbjct: 774  ILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARR 833

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDF 868
              IQ++ P VN    ++    + + + L AI+ VG      I+ A  + P   F +  DF
Sbjct: 834  MGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDF 892

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              RV    LNRR++ESL+ AGA D    +R  LL   +        +++ +     ++F+
Sbjct: 893  IRRVPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDLFS 952

Query: 929  HEKGTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGI 980
              +   ++      +T+      +   +   E+ +LG Y S HPL   + I   LR+M I
Sbjct: 953  DAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSI 1012

Query: 981  KGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +   T+  G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1013 AHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065


>gi|224538019|ref|ZP_03678558.1| hypothetical protein BACCELL_02908 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224520366|gb|EEF89471.1| hypothetical protein BACCELL_02908 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1264

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 373/1141 (32%), Positives = 596/1141 (52%), Gaps = 126/1141 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+           
Sbjct: 4    FVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNGGPK 63

Query: 61   ------KACAAGIQ-----------------------------PIIGCQLDIDMQDNLKM 85
                  K   AGI+                             PIIGC++ +  +    M
Sbjct: 64   GEIKDLKKRIAGIESGEIACEDKDAELADCRAKLAEAENKLFKPIIGCEMYVARR---TM 120

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
              +   P  +   +++L    +GY  LI+LVSR +  +      R   + L++   EGLI
Sbjct: 121  DKKEGKPDQSGWHLIVLAKNEKGYHNLIKLVSRAWT-EGYYMRPRTDRNELEKY-HEGLI 178

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY---- 195
            + +    G + +    +  + AE+ +  +K LFG+  Y+ LQRH+       ++ Y    
Sbjct: 179  VCSACIGGEVPKKILNDQLEDAEEAVRWYKNLFGEDYYLELQRHKATVPRANHEAYPLQQ 238

Query: 196  -RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
               +++++ A  + + L+ +N+  F++EE  EAHD L+ ++    +    R   T   ++
Sbjct: 239  RANAKLIEFAKKYNIKLICSNDVHFVNEEHAEAHDRLICLSTGKDLDDPKRMLYTKQEWM 298

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298
            K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P                ++ EK
Sbjct: 299  KTKAEMNELFADIPEALSNTLEILNKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTEK 358

Query: 299  ECDD----------IQKEEENELRNKAVAGLE----VRLAQGAIAKGYH----------- 333
            +  D          +  EE  + + K + G E    ++L    +AK              
Sbjct: 359  DLFDEFTQDENGNVVLSEEAAKAKIKRLGGYEKLYRIKLEADYLAKLTFDGAKIFYGDPL 418

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
            +++  +RL FEL ++  M F GYFLIV DFI   +   + VGPGRGS AGS  AY L IT
Sbjct: 419  SEEVMERLKFELYIMKTMGFPGYFLIVQDFIAAGRNMGVSVGPGRGSAAGSAVAYCLQIT 478

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
             IDP+++ LLFERFLNPDR+S+PD DIDF  D R EV+R+V  KYG E+VA IIT+G++ 
Sbjct: 479  KIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTQKYGQEKVAHIITYGTMA 538

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDSRFREARLA--DPSVDR 510
             K A++DV R  ++P S+ DRL KL+P+  P   ++L+   D     +A  A  DP V  
Sbjct: 539  TKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIDYVPELQAAEASPDPLVRD 598

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKA 566
             L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE  
Sbjct: 599  TLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIEDT 658

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GLIK DFLGLKTL++++++++ +   R +++++  +P DD  TY L +   T+G FQ ES
Sbjct: 659  GLIKMDFLGLKTLSIIKEAVENIRLHRKLELNIDKVPIDDPATYKLYSDGRTIGTFQFES 718

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
            +GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK+T
Sbjct: 719  AGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLKDT 778

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  KNG    +
Sbjct: 779  YGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDPKV 838

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I K 
Sbjct: 839  LEKIWGDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSNITDITKL 898

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFD 863
              + +   I+++ P VN   + F V  +  I + L A+KGVG     +IME    + PF 
Sbjct: 899  MDECKAMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVLNIMEEREKNGPFK 958

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQWV 915
             + DF  RV+    N++ LE L  AG  D F    R Q           ++ + +Y    
Sbjct: 959  GIFDFVQRVNLTACNKKNLECLALAGGFDEFPELKREQYFAVNSKNEVFMETLVRYGNRY 1018

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYKP 973
            + ++     ++F  E     D  T E    E  S   R   E+ ++G Y S HPLD Y  
Sbjct: 1019 QADQAAAANSLFGGE--NVVDIATPEIPEAERWSDLDRLNRERDLVGIYLSAHPLDEYSV 1076

Query: 974  ILRKM-GIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +L+ +   +  E E  A + G  I +  +V S ++  ++ G+  G     + +   E  F
Sbjct: 1077 VLQHVCNTRMAELEDKAALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAELPF 1136

Query: 1032 F 1032
            F
Sbjct: 1137 F 1137


>gi|189439008|ref|YP_001954089.1| DNA polymerase III subunit alpha [Bifidobacterium longum DJO10A]
 gi|189427443|gb|ACD97591.1| DNA polymerase III alpha subunit [Bifidobacterium longum DJO10A]
          Length = 1185

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 366/1073 (34%), Positives = 569/1073 (53%), Gaps = 68/1073 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++P
Sbjct: 7    NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 66

Query: 70   IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            IIG +     +   QD  ++      Q +        I  L   AE  + L+ L+    +
Sbjct: 67   IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 126

Query: 122  LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +   + +R      + + T  +G+I  +G  SG I           A +    F+ +FG
Sbjct: 127  ANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186

Query: 180  -DRLYVNLQRHRGYDRYRESQV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
             D  ++ L  H       E+QV    + +A   + PL+ATN+S ++  ED +A D ++ +
Sbjct: 187  KDNFFIELMDH---GLTIETQVTNDLLTIAKKLDAPLLATNDSHYVHAEDAQAQDAMLCI 243

Query: 235  AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--API 291
               + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H     
Sbjct: 244  NSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAF 303

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +P+F   E  D    E +    K   GLE R        G    D  ++ D+E  VI +M
Sbjct: 304  MPKFPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQM 353

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            +F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+
Sbjct: 354  QFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPE 413

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+S+PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S 
Sbjct: 414  RVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSV 473

Query: 472  VDRLCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
             +++ K +P  PA      +SL  I D +         FRE   +DP   R+ E ++ +E
Sbjct: 474  GEKITKALP--PAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIE 531

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKT 578
            GL R    HA   ++G  P++   P+    R+D  + T F     E  GL+K DFLGL  
Sbjct: 532  GLIRQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSN 589

Query: 579  LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  +L  +   G   +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++P
Sbjct: 590  LTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKP 649

Query: 638  DCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIY 691
            D   DI AL++LYRPGP  +D+   Y  RKNG +KI  IHP ++  LK    ET G+IIY
Sbjct: 650  DNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIY 709

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  +++
Sbjct: 710  QEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWD 769

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+
Sbjct: 770  ILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARR 829

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDF 868
              IQ++ P VN    ++    + + + L AI+ VG      I+ A  + P   F +  DF
Sbjct: 830  MGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDF 888

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              RV    LNRR++ESL+ AGA D    +R  LL   +        +++ +     ++F+
Sbjct: 889  IRRVPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDLFS 948

Query: 929  HEKGTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGI 980
              +   ++      +T+      +   +   E+ +LG Y S HPL   + I   LR+M I
Sbjct: 949  DAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSI 1008

Query: 981  KGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +   T+  G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1009 AHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061


>gi|159900372|ref|YP_001546619.1| DNA polymerase III subunit alpha [Herpetosiphon aurantiacus ATCC
            23779]
 gi|159893411|gb|ABX06491.1| DNA polymerase III, alpha subunit [Herpetosiphon aurantiacus ATCC
            23779]
          Length = 1296

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 359/1045 (34%), Positives = 562/1045 (53%), Gaps = 68/1045 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G  +   I ++ A  Q  +IAITD   ++ A+EF   A  A ++PI
Sbjct: 4    FVHLHVHSEYSLLDGYATTKAIAERAAELQMDSIAITDHGVMYGAMEFYANAKKANVKPI 63

Query: 71   IGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK--- 126
            IG +  I    N   M   GK  +     ++L+     GY+ L++L SR +L   GK   
Sbjct: 64   IGMEAYIAPNSNKDPMVKGGKNYY----HLLLIAQNEVGYRNLVKLTSRSHLDGMGKGIF 119

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
               RI    L++   EGLI+ +   +G + +       Q A + +  F+ LFG +  ++ 
Sbjct: 120  ARPRIDRQLLEQY-HEGLIVTSSCIAGEVIQQVQAKQRQKAIETVAWFRDLFGPENYFIE 178

Query: 186  LQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ- 242
            LQ H       E   ++V++A    +PLVATN++ F+  ED + H  +MA+  +  + + 
Sbjct: 179  LQLHNNTPELVEINEELVRIANEMHVPLVATNDTHFVRREDLDTHSRVMAMGFNLTLQEL 238

Query: 243  -KDRPRVTPDHYLKNRSEM---VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                 ++   +++ +  EM     I+   P  +ENT  IA  C+  L      LP F   
Sbjct: 239  CSKNYQMDETYHIMSGDEMWDRYKIYGTAP--MENTRRIADMCNLKLDFGRVELPEFDIP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAK--GYHAQDYRQRLDFELNVIARMKFSGY 356
            E  D            A + L +   +G I +  G   ++Y QRL +EL+VI +  F  Y
Sbjct: 297  EGHD------------AASYLRLICEEGLIKRCNGNPTEEYVQRLSYELDVINQTGFPDY 344

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
             LIV D++++A+ N IP  P RGS   S+  Y L ITD+DP++  LLFERFL+P+R+ MP
Sbjct: 345  MLIVWDYVKFARSNGIPCLP-RGSAGASLVLYCLGITDVDPVQNKLLFERFLSPERLEMP 403

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D DF   RR E++ Y+  KYG E VAQIIT+G+L AKAALRD+GR L +P S+VDR+ 
Sbjct: 404  DIDTDFADARRGEILDYIATKYGRENVAQIITYGTLGAKAALRDMGRVLDIPLSEVDRVA 463

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP  P      +++      ++    DP +  L++ +QK+EG  +   THA G+V+  
Sbjct: 464  KLIPTLPVGMTIAKSLDKVPELKQIYDTDPKLRELMDWAQKVEGRMKSVGTHACGVVVSR 523

Query: 537  RPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
             PL  +VP+ R  + +  V   F    + K GL+K D LGL  L++  ++L  + Q  G 
Sbjct: 524  HPLENMVPLQRTTKDEHGVMAAFEGPTLAKMGLLKMDILGLTNLSVAAEALQLIEQTTGK 583

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             + LS IP DD +T+  L    T+ +FQLES+GM + L  ++P  ++D+  +V+LYRPGP
Sbjct: 584  TMWLSDIPLDDKKTFEALGRGETVDVFQLESAGMTRYLVQLKPTRVDDLYGMVALYRPGP 643

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            ++ I VY + KN    I  IHP++ P+L++T GVI+YQEQ+MQ+ Q ++ Y+L EA ++ 
Sbjct: 644  LEQIPVYIHNKNNPHAIKYIHPILKPILEDTYGVIVYQEQIMQLLQAVAEYTLGEAYIVI 703

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +A+ KK KE M +   RF  G  + G+++  A  ++EL+  FA Y FN+ H+  Y ++SY
Sbjct: 704  KAISKKNKELMAENSVRFKEGCLRKGLTQAQADELWELILPFAGYSFNRPHSTLYGLLSY 763

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-- 832
            QTAW+K +YP E++ A+++     ++++ K   +A +  + + PP VN     F + D  
Sbjct: 764  QTAWLKNNYPTEYMTATLSAASGEIDEVAKSVAEASRLGVAVSPPDVNGSKEGFTIVDIA 823

Query: 833  ---------NR-IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRV 881
                     NR I + L+AI+ VG    + I++   +  PF S+EDFC+RVD   LN+RV
Sbjct: 824  GELPEGIKYNRGIRFGLSAIRNVGVGPIQAILKVRDESGPFSSIEDFCARVDRGVLNKRV 883

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG---TFSDKI 938
            +ESLV  GA+D    +R Q L  LD         +K R     ++F    G   T +  I
Sbjct: 884  MESLVKCGAMDSLPGTRHQKLAILDRAISAGHETQKAREAGQNSLFDMLGGGEQTSTPTI 943

Query: 939  TLEKFSVENSSVRFEN-----EQRVLGFYFSGHPL------DVYKPILRKMGIKGYEESV 987
            +   F    + +  +      E+ +LG Y S HP+        + P    +G+   +   
Sbjct: 944  SPIPFPPAATGLEMQRELLNWEKELLGMYISEHPMAQALANAPHDPGRISLGMIDKKHI- 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKG 1012
                G  IRL  M+ + ++ +T+KG
Sbjct: 1003 ----GTTIRLIGMINNTKRIQTKKG 1023


>gi|322691499|ref|YP_004221069.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp.
            longum JCM 1217]
 gi|320456355|dbj|BAJ66977.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp.
            longum JCM 1217]
          Length = 1185

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 363/1070 (33%), Positives = 567/1070 (52%), Gaps = 62/1070 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++P
Sbjct: 7    NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 66

Query: 70   IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            IIG +     +   QD  ++      Q +        I  L   AE  + L+ L+    +
Sbjct: 67   IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 126

Query: 122  LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +   + +R      + + T  +G+I  +G  SG I         + A +    F+ +FG
Sbjct: 127  ANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFEEALRAAGEFQDIFG 186

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +      ++ +A     PL+ATN+S ++  ED +A D ++ +   
Sbjct: 187  KDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSG 246

Query: 238  TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--APILPR 294
            + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H     +P+
Sbjct: 247  SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMPK 306

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            F   E  D    E +    K   GLE R        G    D  ++ D+E  VI +M+F 
Sbjct: 307  FPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFC 356

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+S
Sbjct: 357  GYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVS 416

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            +PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  ++
Sbjct: 417  LPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEK 476

Query: 475  LCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLY 522
            + K +P  PA      +SL  I D +         FRE   +DP   R+ E ++ +EGL 
Sbjct: 477  ITKALP--PAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIEGLI 534

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTL 581
            R    HA   ++G  P++   P+    R+D  + T F     E  GL+K DFLGL  LT+
Sbjct: 535  RQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNLTI 592

Query: 582  LQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +L  +   G   +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++PD  
Sbjct: 593  IHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNF 652

Query: 641  EDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQ 694
             DI AL++LYRPGP  +D+   Y  RKNG +KI  IHP ++  LK    ET G+IIYQEQ
Sbjct: 653  NDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQ 712

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            V   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  ++++L 
Sbjct: 713  VQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILV 772

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  I
Sbjct: 773  PFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGI 832

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSR 871
            Q++ P VN    ++    + + + L AI+ VG      I+ A  + P   F +  DF  R
Sbjct: 833  QVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDFIRR 891

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V    LNRR++ESL+ AGA D    +R  LL   +        +++ +     ++F+  +
Sbjct: 892  VPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDLFSDAE 951

Query: 932  GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIKGY 983
               ++      +T+      +   +   E+ +LG Y S HPL   + I   LR+M I   
Sbjct: 952  DGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHL 1011

Query: 984  EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T+  G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1012 VDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061


>gi|311895500|dbj|BAJ27908.1| putative DNA polymerase III subunit alpha [Kitasatospora setae
            KM-6054]
          Length = 1175

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 351/1062 (33%), Positives = 564/1062 (53%), Gaps = 52/1062 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            + HL VH+ YS+L+GA  L  +  ++    Q  +A+TD  N++ A EF ++A AAGI P+
Sbjct: 6    YAHLHVHTEYSMLDGAARLKQLFAEVGRLGQTHVAMTDHGNMYGAAEFHKQAVAAGITPV 65

Query: 71   IGCQLDI--DMQDNLKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            IG +  +  + + N K    G+        +         +     EG   L +L SR Y
Sbjct: 66   IGIEAYVAPESRSNTKRILWGQPHQKRDDVSASGAYTHKTIWARNKEGLHNLFKLTSRSY 125

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179
                  +  R+    + E    GL+  TG  SG +           A +    ++++FG 
Sbjct: 126  AEGWLVKWPRMDKEIIAEHAA-GLMATTGCPSGEVQTRLRLGQFDEALRSAGEYQEIFGR 184

Query: 180  DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            +  ++ L  H G +   R R+  +V++     +P V TN+S + +E D  AHD+L+ V  
Sbjct: 185  ENYFLELMDH-GLEIEGRVRDG-LVEIGRRLNIPPVVTNDSHYTTEADAGAHDLLLCVQT 242

Query: 237  STVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENT-VEIARRCSFILQVH-API 291
               +S  DR R     +Y+K+ +EM  + S     E   N+ + +A R           +
Sbjct: 243  GKNLSDPDRFRFDGTGYYVKSAAEMYGLDSSDIWQEGCRNSQLLVAERVDTTGMFEFKNL 302

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +PRF   E       E    R K   G++ R   G      + +++R+  ++E++ I +M
Sbjct: 303  MPRFPIPEG---FGSEAEFFRAKVWEGMDRRFPGG------YDEEHRELAEYEMDTIVQM 353

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFL+VADFI WAK   I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 354  GFPAYFLVVADFIMWAKSQGIAVGPGRGSAAGSLVAYAMGITDLDPIPHGLIFERFLNPE 413

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR +VIRYV  K+G ++VA I+T+G+++AKAA++D  R L  PY+ 
Sbjct: 414  RVSMPDVDIDFDERRRADVIRYVTEKWGSDKVAMIVTYGTIKAKAAIKDSSRVLGYPYAM 473

Query: 472  VDRLCKLIPNDP-AHPVSLQAIADDSRFREARLA--------DPSVDRLLEISQKLEGLY 522
             DR+ K +P D     + L  I D +  R             DP V ++++ ++ +EGL 
Sbjct: 474  GDRITKAMPPDVMGKGIPLSGITDSAHPRYGEAGEIRALYENDPDVKKVIDTARGIEGLI 533

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   PL+  +P++      + +TQF+    E  GL+K DFLGL+ LT++
Sbjct: 534  RQPGVHAAGVIMSAEPLTDHIPVWTRHTDGVTITQFDYPTCEGLGLLKMDFLGLRNLTIM 593

Query: 583  QKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + + +GV+++L  +P DD   Y LL    TLG+FQL+   MR  L  M+PD  E
Sbjct: 594  DDAVKAIERNKGVRIELLQLPLDDKPAYELLARGDTLGVFQLDGGPMRSLLRLMKPDNFE 653

Query: 642  DIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQV 695
            DI A+++LYRPGP  +++   Y  RKNG+++I  IHP L +P+   L+ T G+I+YQEQV
Sbjct: 654  DISAVLALYRPGPMGVNSHTNYALRKNGQQEITPIHPELAEPLREVLEPTYGLIVYQEQV 713

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+L+GYSL +AD+LRRAMGKK KE ++ +   F  G  + G S      ++++L  
Sbjct: 714  QKAAQILAGYSLGQADLLRRAMGKKKKEILEAEFVPFQRGCRERGYSDAAIQAVWDVLVP 773

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            F+ Y FNK+H A Y ++SY TA++K +YP E+++A +T   D+ +K   +  + R+  IQ
Sbjct: 774  FSGYAFNKAHTAGYGLVSYWTAYLKANYPAEYMSALLTSVKDDKDKSAVYLNECRKMGIQ 833

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVD 873
            ++PP VN    DF   G   + + L AI+ VG      ++    A   + S  DF  +V+
Sbjct: 834  VLPPDVNESDADFTPHGSETVRFGLTAIRNVGGPVVESMIRTRKAKGKYTSFPDFLEKVE 893

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEK 931
            S   N+R +ESL+ AGA D  G++R  L    + +      +++       ++F    ++
Sbjct: 894  SVVCNKRTVESLIKAGAFDSLGHTRKGLSAQFEPMIDNVVGIKRKEAEGQFDLFETVSDE 953

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
             +F   +   +   E   V   +E+ +LG Y S HPL   + +L         +      
Sbjct: 954  PSFGLDVVFAEDEWEK-PVLLTHEREMLGLYVSSHPLHGIEHVLADKADCAVADLAERPD 1012

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            G  + +  ++   Q+K T++G+     T  + A   +  FFP
Sbjct: 1013 GVTVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIDCMFFP 1054


>gi|239620845|ref|ZP_04663876.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp.
            infantis CCUG 52486]
 gi|239516421|gb|EEQ56288.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp.
            infantis CCUG 52486]
          Length = 1189

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 363/1070 (33%), Positives = 566/1070 (52%), Gaps = 62/1070 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++P
Sbjct: 11   NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 70

Query: 70   IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            IIG +     +   QD  ++      Q +        I  L   AE  + L+ L+    +
Sbjct: 71   IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 130

Query: 122  LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +   + +R      + + T  +G+I  +G  SG I           A +    F+ +FG
Sbjct: 131  ANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 190

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +      ++ +A     PL+ATN+S ++  ED +A D ++ +   
Sbjct: 191  KDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSG 250

Query: 238  TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--APILPR 294
            + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H     +P+
Sbjct: 251  SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMPK 310

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            F   E  D    E +    K   GLE R        G    D  ++ D+E  VI +M+F 
Sbjct: 311  FPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFC 360

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+S
Sbjct: 361  GYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVS 420

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            +PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  ++
Sbjct: 421  LPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEK 480

Query: 475  LCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLY 522
            + K +P  PA      +SL  I D +         FRE   +DP   R+ E ++ +EGL 
Sbjct: 481  ITKALP--PAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDTKRITEEAKGIEGLI 538

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTL 581
            R    HA   ++G  P++   P+    R+D  + T F     E  GL+K DFLGL  LT+
Sbjct: 539  RQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNLTI 596

Query: 582  LQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +L  +   G   +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++PD  
Sbjct: 597  IHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNF 656

Query: 641  EDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQ 694
             DI AL++LYRPGP  +D+   Y  RKNG +KI  IHP ++  LK    ET G+IIYQEQ
Sbjct: 657  NDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQ 716

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            V   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  ++++L 
Sbjct: 717  VQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILV 776

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  I
Sbjct: 777  PFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGI 836

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSR 871
            Q++ P VN    ++    + + + L AI+ VG      I+ A  + P   F +  DF  R
Sbjct: 837  QVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDFIRR 895

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V    LNRR++ESL+ AGA D    +R  LL   +        +++ +     ++F+  +
Sbjct: 896  VPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDLFSDAE 955

Query: 932  GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIKGY 983
               ++      +T+      +   +   E+ +LG Y S HPL   + I   LR+M I   
Sbjct: 956  DGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHL 1015

Query: 984  EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T+  G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1016 VDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065


>gi|317481576|ref|ZP_07940612.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916936|gb|EFV38322.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA]
          Length = 1185

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 365/1073 (34%), Positives = 569/1073 (53%), Gaps = 68/1073 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++P
Sbjct: 7    NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 66

Query: 70   IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            IIG +     +   QD  ++      Q +        I  L   AE  + L+ L+    +
Sbjct: 67   IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 126

Query: 122  LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +   + +R      + + T  +G+I  +G  SG I         + A +    F+ +FG
Sbjct: 127  ANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFEEALRAAGEFQDIFG 186

Query: 180  -DRLYVNLQRHRGYDRYRESQV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
             D  ++ L  H       E+QV    + +A   + PL+ATN+S ++  ED +A D ++ +
Sbjct: 187  KDNFFIELMDH---GLTIETQVTNDLLTIAKKLDAPLLATNDSHYVHAEDAQAQDAMLCI 243

Query: 235  AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--API 291
               + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H     
Sbjct: 244  NSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAF 303

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +P+F   E  D    E +    K   GLE R        G    D  ++ D+E  VI +M
Sbjct: 304  MPKFPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQM 353

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            +F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+
Sbjct: 354  QFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPE 413

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+S+PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S 
Sbjct: 414  RVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSV 473

Query: 472  VDRLCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
             +++ K +P  PA      +SL  I D +         FRE   +DP   R+ E ++ +E
Sbjct: 474  GEKITKALP--PAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIE 531

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKT 578
            GL R    HA   ++G  P++   P+    R+D  + T F     E  GL+K DFLGL  
Sbjct: 532  GLIRQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSN 589

Query: 579  LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  +L  +   G   +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++P
Sbjct: 590  LTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKP 649

Query: 638  DCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIY 691
            D   DI AL++LYRPGP  +D+   Y  RKNG +KI  IHP ++  LK    ET G+IIY
Sbjct: 650  DNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIY 709

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  +++
Sbjct: 710  QEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWD 769

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+
Sbjct: 770  ILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARR 829

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDF 868
              IQ++ P VN    ++    + + + L AI+ VG      I+ A  + P   F +  DF
Sbjct: 830  MGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDF 888

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              RV    LNRR++ESL+ AGA D    +R  L    +        +++ +     ++F+
Sbjct: 889  IRRVPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFS 948

Query: 929  HEKGTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGI 980
              +   ++      +T+      +   +   E+ +LG Y S HPL   + I   LR+M I
Sbjct: 949  DAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSI 1008

Query: 981  KGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +   T+  G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1009 AHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061


>gi|32472323|ref|NP_865317.1| DNA polymerase III alpha subunit [Rhodopirellula baltica SH 1]
 gi|32443559|emb|CAD73001.1| DNA polymerase III alpha subunit [Rhodopirellula baltica SH 1]
          Length = 1199

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 358/995 (35%), Positives = 546/995 (54%), Gaps = 40/995 (4%)

Query: 2   TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           T+  E  P FVHL  HS YSLL+GA  +  ++ +       A+A+TD  NL  ALEF +K
Sbjct: 16  TEIPETKP-FVHLHCHSHYSLLDGAGDIGKLVKRAVDHGMNALALTDHGNLHGALEFYRK 74

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
           A  AGI PIIG +  I             +   +   + LL     G++ LI+L S   L
Sbjct: 75  AKDAGINPIIGYEAYIAPGSRFDKGGASSSKAASY-HLTLLAQNRTGFKNLIKLASAASL 133

Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-----SSQVAEKRLLTFKK 176
            +      RI    L++   EG++ L+G  S    RA           + A+K    F K
Sbjct: 134 -EGFYFKPRIDKEILEKY-NEGIVCLSGCVSSEFSRAILKGIQTKEHEEEAKKIAGWFHK 191

Query: 177 LFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           +FGDR ++ +  +     R +    V +A    LPLVAT++  ++++ED EA D+++ + 
Sbjct: 192 VFGDRYFIEIMNNDVDIQRTQLEGAVDIANKMGLPLVATSDCHYVNQEDAEAQDIMLCIN 251

Query: 236 HSTVVSQKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                +   R ++  D + L++  +M   F  L +A+  + EIA      L+ +    P 
Sbjct: 252 TGRFRTDNTRMKMENDQFFLRSPQQMYEKFPGLEDAVGRSQEIADTVDIQLEFNKYFFPS 311

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMK 352
           F    C D +    + LR     GL  R       I  G  + +   RLD EL+VI ++ 
Sbjct: 312 F---PCPD-ELTPLDYLRKLCEQGLMERYEGDDERIIDGKLSDEVMARLDRELDVIEKLG 367

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           +  YFLIV DF+  A+   I     RGSG G++  YAL ++ + PLR+ LLFERFL+  R
Sbjct: 368 YPTYFLIVWDFVNHARDIGISA-TARGSGVGAIVCYALYMSHVCPLRYDLLFERFLDESR 426

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
              PD DIDF ++RR EVI YV+ +YG E V QI TFG+L AKAA++D GRAL +P S+V
Sbjct: 427 TEPPDIDIDFEKERRIEVIDYVKERYGSEMVCQIGTFGTLAAKAAIKDTGRALGIPLSRV 486

Query: 473 DRLCKLIPNDPAHPV--SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
           +++ +L+P++    +  SL+  AD    +     DP +  LL+++ K+EGL R+  THAA
Sbjct: 487 NQITELVPDELKITIAKSLEKSAD---LKMIYDGDPEIRELLDLAMKIEGLARNVGTHAA 543

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            +VI D+PL++ VP+ R       +TQ+ M  +E +GL+K DFLGL+ LT+L +++  + 
Sbjct: 544 AVVIADKPLTEYVPLGRVPGKQDVITQWAMVDVEASGLLKMDFLGLRNLTILSRTVKLVE 603

Query: 591 QR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
           Q  G  +D    P DD  +Y LL    T G+FQLES G+R  L+ M+PD   DIIA  +L
Sbjct: 604 QTTGTTIDPLKFPLDDKPSYALLQRGETKGVFQLESGGIRDLLQRMKPDTFNDIIATAAL 663

Query: 650 YRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
           YRPGP++  +V  Y N K+G+++    HP++  +L+ET  +++YQEQVM+I   L    L
Sbjct: 664 YRPGPLEGGMVDDYVNIKHGRQQPEYKHPVLKEILEETNSIMVYQEQVMRILNRLGDVPL 723

Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
           ++A    +A+ KK +  +D   + FI+G+ KNG+++  A +I+ L+ KFA YGFNKSH+ 
Sbjct: 724 AKAYTCIKAISKKKQALIDANHDVFIAGSIKNGLAEKDAEDIWNLIVKFAGYGFNKSHST 783

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDN-----VEKIKKFCQDARQFNIQIMPPSVN 822
           AYA+++YQTA++K HYPVEF+AA ++ ++        + + +  +D  + +I+++PP+VN
Sbjct: 784 AYALVAYQTAYLKAHYPVEFMAALLSSDISGRNFKRKDALVEHMEDCDRMDIEVLPPNVN 843

Query: 823 TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRV 881
               DF V D +I ++L+AIK  G +TA  I E    + PF  + DFC RVD    NR  
Sbjct: 844 QSDADFGVLDGKIPFALSAIKACGGSTAISIEEERKKNGPFKDIFDFCERVDPHDCNRSS 903

Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--------AHEKGT 933
           +E+L+ AGA DCFG  R QL   L+   +    V+ ++     + F        A   G 
Sbjct: 904 IETLIKAGAFDCFGAKRSQLASVLERAMQAGAKVQADKKTGQASFFDAFDEEVDADSNGE 963

Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
            S  + L          +   E+ VLGFY   HPL
Sbjct: 964 SSAAVPLPDIEEWPDREKLLAEKEVLGFYLDSHPL 998


>gi|254391618|ref|ZP_05006817.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC
            27064]
 gi|294812110|ref|ZP_06770753.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC
            27064]
 gi|197705304|gb|EDY51116.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC
            27064]
 gi|294324709|gb|EFG06352.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC
            27064]
          Length = 1179

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 365/1078 (33%), Positives = 568/1078 (52%), Gaps = 76/1078 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VH+ YSLL+GA  L ++           IA+TD  NL  A +F  +A  AGI 
Sbjct: 4    PPFTHLHVHTQYSLLDGAARLKDMFSACKDMGMSHIAMTDHGNLHGAYDFFHQAKGAGIT 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY-QRLIELVSRMYLLDQGK- 126
            PIIG +  +  +      N+ K  +         VS + GY  + I   +R  L +  + 
Sbjct: 64   PIIGIEAYVAPESR---RNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANRTGLHNLFRL 120

Query: 127  QSVRICLSWLQEI----------GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
             S      WLQ+            +EGLI  TG  SG +           A K    ++ 
Sbjct: 121  SSDAYAEGWLQKWPRMDKETIAQWSEGLIASTGCPSGELQTRLRLGQFDEALKAASEYQD 180

Query: 177  LFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            +FG  R ++ L  H    +R     ++++    ++P + TN+S +  + +  AHD L+ +
Sbjct: 181  IFGKGRYFLELMDHGIEIERRVRDGLLEIGKKLDIPPLVTNDSHYTFDHEAGAHDALLCI 240

Query: 235  AHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAP- 290
                 +S  DR R     +YLK+  +M +I S     E   NT+ +A +        A  
Sbjct: 241  QTGKNLSDPDRFRFDGTGYYLKSTDQMYAIDSSDAWQEGCRNTLLVAEQIDTSGMFEAKN 300

Query: 291  ILPRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
            ++P+F I     ++   +E           EVR        G   +D +++ ++E++VI 
Sbjct: 301  LMPKFEIPAGFTEVTWFQE-----------EVRTGMARRYPGGVPEDRQRQAEYEMDVIV 349

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M F GYFL+VADFI WAKKN I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLN
Sbjct: 350  SMGFPGYFLVVADFIMWAKKNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLN 409

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G+++AK A++D  R L  PY
Sbjct: 410  PERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPY 469

Query: 470  SQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +  DRL K +P              DPAHP   +A       R     +P V ++++ ++
Sbjct: 470  AMGDRLTKAMPADVLGKGIPLSGILDPAHPRYSEA----GEIRGMYENEPDVKKVIDTAR 525

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             +EGL R    HAAG+++   P++   P++      + +TQ++    E  GL+K DFLGL
Sbjct: 526  GVEGLVRQMGVHAAGVIMSSEPITDHAPVWVRHSDGVTITQWDYPSCESLGLLKMDFLGL 585

Query: 577  KTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            + LT++  ++  + A +G+++++  IP DD  TY LL    TLG+FQ +   MR  L  M
Sbjct: 586  RNLTIMDDAVKMVKANKGIELEMLSIPLDDPTTYELLCRGDTLGVFQFDGGPMRSLLRLM 645

Query: 636  QPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVI 689
            +PD  EDI A+ +LYRPGP  +++   Y  RKN +++I  IHP ++  LKE    T G+I
Sbjct: 646  KPDNFEDISAVSALYRPGPMGMNSHTNYALRKNKQQEITPIHPELEEPLKEVLDVTYGLI 705

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F +GA KNG S      +
Sbjct: 706  VYQEQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFTIFQAGARKNGYSDEAVQAL 765

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +++L  FA Y FNK+H++AY +++Y TA++K ++P E++AA +T   D+ +K   +  + 
Sbjct: 766  WDVLVPFAGYAFNKAHSSAYGLVTYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNEC 825

Query: 810  RQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLED 867
            R+  I+++PP+VN    +F   GD+ I + L+A++ VGT     I+     K  + S  D
Sbjct: 826  RRMGIKVLPPNVNESQSNFAAQGDDVILFGLSAVRNVGTNVVESIIRCRKSKGKYSSFPD 885

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F  +V+    N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F
Sbjct: 886  FLDKVEVVVCNKRTVESLIKAGAFDELGHTRKGLVAHHEPMIDNVVAVKRKEAEGQFDLF 945

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFE------NEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                   +D+       VE S V +E       E+ +LG Y S HPL   + +L      
Sbjct: 946  GGMGDDSADEPGF-GLDVEFSDVEWEKSYLLAQEREMLGLYVSDHPLFGIEHVLSDKS-- 1002

Query: 982  GYEESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + S++ + G        + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1003 --DASISQLTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|198274347|ref|ZP_03206879.1| hypothetical protein BACPLE_00491 [Bacteroides plebeius DSM 17135]
 gi|198272837|gb|EDY97106.1| hypothetical protein BACPLE_00491 [Bacteroides plebeius DSM 17135]
          Length = 1265

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 372/1143 (32%), Positives = 602/1143 (52%), Gaps = 129/1143 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YS+L+G  S+  ++DK  A+    IA+TD  ++F   EF            
Sbjct: 4    FVHLHVHTQYSILDGQASIPRLVDKAMANGMRGIAVTDHGDMFGIKEFFNYVNKKNGGTN 63

Query: 61   ---------------------------KACAAGIQ--------PIIGCQLDIDMQDNLKM 85
                                        AC   ++        PI GC++ +  +   ++
Sbjct: 64   GEIKDLKKKIAALESGKEESENPEAEIAACKEQLEAAKKKLFKPIFGCEMYVARR---RL 120

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGL 144
             ++   P  +   +V+L    +GY  LI+LVS+ +   +G     R   + L++   EGL
Sbjct: 121  EDKEGKPDQSGYHLVVLAKNLKGYHNLIKLVSKAWT--KGFYMRPRTDRAELEKY-HEGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYRES 198
            I+ +    G + R       + AE+ +  +K LFGD  Y+ LQRH+       ++ Y   
Sbjct: 178  IVCSACLGGEVPRRITAGQFEEAEEAIRWYKNLFGDDYYLELQRHKATVARANHEVYPMQ 237

Query: 199  QVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            QVV     + A  + + LV TN+  F+ EE+ EAHD L+ ++    +   +R   T   +
Sbjct: 238  QVVNEKLIEYAKKYNIKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297
            +K R EM  +F+D+PEAL NTVEI  +  F    HAPI+P                +F E
Sbjct: 298  MKTREEMNEVFADVPEALSNTVEICDKVEFYSIDHAPIMPTFAIPEDFGTEEEYRKKFTE 357

Query: 298  KECDD--IQKEEENELRNKAVAGLEV--------------------RLAQGAIAKGYH-- 333
            K+  D   + E  N + ++A A  ++                    +LA     + Y   
Sbjct: 358  KDLFDEFTRDENGNVVMDEAAAKAKIERLGGYEKLYRIKLEADYLAKLAYDGAKRRYGEN 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
             +++ ++R+ FEL+++  M F GYFLIV DFI  A+   ++ VGPGRGS AGS  AY L 
Sbjct: 418  LSEEVQERIKFELHIMKTMGFPGYFLIVQDFINAARHQLDVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA IIT+G+
Sbjct: 478  ITQIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRLCKLIP+  P   ++L  AIA     +EA ++ +P +
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLCKLIPDKLPDKKLNLPNAIAYVPELQEAEVSPNPVL 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               ++ ++ LEG  R+   HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ + Q +G+ +++  +P DD  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAIENIRQSKGIVLNIDEVPIDDPATYRLYSEGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPIMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGKKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA+M+  + N+ +I 
Sbjct: 838  KVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAATMSRNISNITEIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIM-EASAD 859
            K   + +   ++++ P VN   + F V   GD  I + L AIKGVG +  + I+ E   +
Sbjct: 898  KLMDECKSMGVKVLGPDVNESNLKFSVNYRGD--IRFGLGAIKGVGESAVQSILDERRKN 955

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL------QSLDNI-QKY 911
              F ++ DF  RV+    NR+ +E+L  AG  D F G  R          +S  +I  +Y
Sbjct: 956  GEFKNIFDFVQRVNLSACNRKNIENLALAGGFDSFSGIKREDFFVKNAKDESFSDILVRY 1015

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
                + ++     ++F  E         +      +   R   E+ ++G Y S HPLD +
Sbjct: 1016 GNKYQLDKAAAANSLFGGEHEVEVATPEIVPAPSWSDLERLNKERDLVGIYLSAHPLDEF 1075

Query: 972  KPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              IL  +      E   +  ++ +++ L  +V   ++  T+ G   G     + +   E 
Sbjct: 1076 AVILENVCNVHMAELTDLTPLQNHDLVLGGIVTGVREGYTKTGKPYGIAKVEDYSGTAEF 1135

Query: 1030 NFF 1032
             FF
Sbjct: 1136 AFF 1138


>gi|296454472|ref|YP_003661615.1| DNA polymerase III subunit alpha [Bifidobacterium longum subsp.
            longum JDM301]
 gi|296183903|gb|ADH00785.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
            longum JDM301]
          Length = 1185

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 362/1070 (33%), Positives = 565/1070 (52%), Gaps = 62/1070 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++P
Sbjct: 7    NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 66

Query: 70   IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            IIG +     +   QD  ++      Q +        I  L   AE  + L+ L+    +
Sbjct: 67   IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 126

Query: 122  LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +   + +R      + + T  +G+I  +G  SG I           A +    F+ +FG
Sbjct: 127  ANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +      ++ +A     PL+ATN+S ++  ED +A D ++ +   
Sbjct: 187  KDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSG 246

Query: 238  TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--APILPR 294
            + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H     +P+
Sbjct: 247  SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLAIAERCNVMFDDHEDGAFMPK 306

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            F   E  D    E +    K   GLE R        G    D  ++ D+E  VI +M+F 
Sbjct: 307  FPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFC 356

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+S
Sbjct: 357  GYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVS 416

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            +PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  ++
Sbjct: 417  LPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEK 476

Query: 475  LCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLY 522
            + K +P  PA      +SL  I D +         FRE   +DP   R+ E ++ +EGL 
Sbjct: 477  VTKALP--PAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLI 534

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTL 581
            R    HA   ++G  P++   P+    R+D  + T F     E  GL+K DFLGL  LT+
Sbjct: 535  RQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNLTI 592

Query: 582  LQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +L  +   G   +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++PD  
Sbjct: 593  IHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNF 652

Query: 641  EDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQ 694
             DI AL++LYRPGP  +D+   Y  RKNG +KI  IHP ++  LK    ET G+IIYQEQ
Sbjct: 653  NDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQ 712

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            V   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  ++++L 
Sbjct: 713  VQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILV 772

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  I
Sbjct: 773  PFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGI 832

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSR 871
            Q++ P VN    ++    + + + L AI+ VG      I+ A  + P   F +  DF  R
Sbjct: 833  QVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDFIRR 891

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V    LNRR++ESL+ AGA D    +R  L    +        +++ +     ++F+  +
Sbjct: 892  VPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAE 951

Query: 932  GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIKGY 983
               ++      +T+      +   +   E+ +LG Y S HPL   + I   LR+M I   
Sbjct: 952  DGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHL 1011

Query: 984  EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T+  G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1012 VDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061


>gi|320011307|gb|ADW06157.1| DNA polymerase III, alpha subunit [Streptomyces flavogriseus ATCC
            33331]
          Length = 1179

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 358/1076 (33%), Positives = 562/1076 (52%), Gaps = 72/1076 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VH+ YSLL+GA  L ++ +         IA+TD  NL  A +F   A  AG+ 
Sbjct: 4    PPFTHLHVHTQYSLLDGAARLKDMFEACNDMGMSHIAMTDHGNLHGAYDFFHSAKKAGVT 63

Query: 69   PIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSR 118
            PIIG +  +  +    K   Q   P      +          +  + + G   L +L S 
Sbjct: 64   PIIGIEAYVAPESRKHKRKVQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFKLSSD 123

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             Y     ++  R+    + +  +EGLI  TG  SG +           A +    +K +F
Sbjct: 124  AYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDYKDIF 182

Query: 179  GD-RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            G+ R ++ L  H    +R     ++++    ++P + TN+S +    +  AHD L+ +  
Sbjct: 183  GEGRYFLELMDHGIEIERRVRDGLLEIGRKLDIPPLVTNDSHYTYANEATAHDALLCIQT 242

Query: 237  STVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHA-PIL 292
               +S  DR R     +YLK   EM  + S     E   NT+ +A++           ++
Sbjct: 243  GKNLSDPDRFRFDGTGYYLKTTDEMYGVDSSDAWQEGCANTLLVAQQIDTTGMFEKRDLM 302

Query: 293  PRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            P+F I +   +I   +E           EVR   G    G   +D +++ ++E+++I +M
Sbjct: 303  PKFDIPEGFTEITWFQE-----------EVRAGMGRRYPGGVPEDRQKQAEYEMDIIIQM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPITHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+ 
Sbjct: 412  RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
             DRL K +P              DP HP   +A       R     +P V ++++ ++ +
Sbjct: 472  GDRLTKAMPADVLGKGIDLNGITDPKHPRYSEA----GEIRGMYENEPDVRKVIDTAKGV 527

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ 
Sbjct: 528  EGLVRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRN 587

Query: 579  LTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  ++  + A +GV +++  +P DD +TY LL    TLG+FQ +   MR  L  MQP
Sbjct: 588  LTIMDDAIKMVKANKGVDLEMLSLPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQP 647

Query: 638  DCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIY 691
            D  EDI A+ +LYRPGP  +++   Y  RKN +++I  IHP ++  LKE    T G+I+Y
Sbjct: 648  DNFEDISAVSALYRPGPMGMNSHTNYAERKNARQEITPIHPELEEPLKEVLGLTYGLIVY 707

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQV + AQ+++GYSL EAD+LRR MGKK  +E+ K    F +GA KNG S      +++
Sbjct: 708  QEQVQKAAQIVAGYSLGEADILRRVMGKKKADELAKNFVLFEAGAKKNGFSDAAIKALWD 767

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +L  FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+
Sbjct: 768  VLVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRR 827

Query: 812  FNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFC 869
              I+++PP+VN    +F   GD+ I + L A++ VG+     I+    A   + +  DF 
Sbjct: 828  MGIKVLPPNVNESESNFAAQGDDVILFGLTAVRNVGSNVVDSIIRCRKAKGKYSTFPDFL 887

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             +V++   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F  
Sbjct: 888  DKVEAVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGG 947

Query: 930  EKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMG---- 979
                 SD+       VE S + +E       E+ +LG Y S HPL   + +L        
Sbjct: 948  MGDESSDEPGF-GLDVEFSDIEWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKSDAAI 1006

Query: 980  --IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + G E +   I    + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1007 SQLTGGEHADGAI----VTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|225351454|ref|ZP_03742477.1| hypothetical protein BIFPSEUDO_03049 [Bifidobacterium
            pseudocatenulatum DSM 20438]
 gi|225157798|gb|EEG71081.1| hypothetical protein BIFPSEUDO_03049 [Bifidobacterium
            pseudocatenulatum DSM 20438]
          Length = 1196

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 355/1086 (32%), Positives = 573/1086 (52%), Gaps = 72/1086 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S +FV L  H+ YSLL+GA  + +++ +      PA+ ITD  N+  A E    A  
Sbjct: 1    MATSGNFVQLHNHTHYSLLDGASKIPDLVRRAKELNMPAVGITDHGNMHGAYEMWSTAVK 60

Query: 65   AGIQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102
             G++PIIG +                       DID Q   +  N   +    +  + + 
Sbjct: 61   EGVKPIIGIEAYVTPETARQDQTRVSWDTNWNPDIDPQHRRRNPND-VSGGGLITHLTMW 119

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
              T EG   L++  +   L  +  +  R+    L +  ++G+I  +G  SG I       
Sbjct: 120  AETDEGLVNLMKASTDANLEGRVMRYPRMDKEILAKY-SKGIIASSGCPSGIIQTRLLLG 178

Query: 163  SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220
                A +     + +FG D  Y+    H    ++     ++ +A     PL+ATN+S ++
Sbjct: 179  QFDEALRAAGELQDIFGRDNFYIEFMDHGLKIEKQVTDGLLDIAKKLNAPLLATNDSHYV 238

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
              ED  + D ++ +   + + +  R +     +YLK+  EM  +F D+PEA +NT+EIA 
Sbjct: 239  RAEDAGSQDAMLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDIPEACDNTLEIAE 298

Query: 280  RCSFILQVH--APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
            RC+ +   H     +P+F   +C +   E    L+ K   GLE R        G+   + 
Sbjct: 299  RCNVMFDDHEDGAFMPQF---DCPEGWDETSLFLK-KVEEGLERRY------DGHPPIEV 348

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             ++ D+E  VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP
Sbjct: 349  LKQADYECGVICQMQFCGYFLVVADYINWAKSHGVMVGPGRGSAAGAMVAYAMGITELDP 408

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
            ++  L+FERFLNP+R+S+PD D+DF  D R  V+ YV +KYG ++VAQ + +G+++ K A
Sbjct: 409  IKHGLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGDKYGRDKVAQCVIYGTIKTKQA 468

Query: 458  LRDVGRALQMPYSQVDRLCKLIP-------NDPAHPV---SLQAIADDSRFREARLADPS 507
            L+D  R +   +S  +R+ K +P       + P H +   S +  A+   FRE   +DP 
Sbjct: 469  LKDSARIMGYEFSMGERITKALPPAQTGGKDIPLHDIFEPSSKRYAEAREFRELYDSDPD 528

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKA 566
            V R+ + +  +EGL R    HA   ++G  P+S   P+    R+D  V T       E  
Sbjct: 529  VKRVTDEAMGIEGLIRQTGVHACATIMGSEPISNTSPLLE--RTDGTVTTTLEYHTCETL 586

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K DFLGL  LT+++ +L+ +   G  ++D + IP DD  TY LL+   TLG+FQL+S
Sbjct: 587  GLVKMDFLGLSNLTVIRDTLNNIEANGKTRIDHTKIPLDDRATYDLLSRGDTLGVFQLDS 646

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLI-DPM- 681
             GMR  L+ ++P+   DI AL++LYRPGP  +D+   Y  RKNG +KI  IHP + +P+ 
Sbjct: 647  DGMRSLLKTLKPNNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLK 706

Query: 682  --LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
              L ET G+I+YQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++
Sbjct: 707  EVLDETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEH 766

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G S+  A  ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N 
Sbjct: 767  GYSQEAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNK 826

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
            +K   +  +AR+  IQ++ P VN    ++    + + + L AI+ VG      I++   +
Sbjct: 827  DKTALYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGKAAVDAIVKEREN 886

Query: 860  K--PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
                + +  DF  RV  + LNRR++ESL+ AGA D    +R  L    +        +++
Sbjct: 887  DHGKYVNFPDFIRRVPMEALNRRLVESLIKAGAFDSIDPNRRALFTIHEAAINSVVGLKR 946

Query: 918  NRTNKHENIFA-------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
             +     ++F+        + G     + +      +   +   E+ +LG Y S HPL  
Sbjct: 947  KQAEGQFDLFSDLEDAGEDDAGMGDAMVNVPDVEEWDKKTKLNFEREMLGLYVSDHPLSG 1006

Query: 971  YKPI---LRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
             + I   LR+M I    +  A +  G  + +A ++ +  ++ ++KG+    VT  +    
Sbjct: 1007 MQSILVSLREMSIAHLIDRAANMPDGQQVTVAGLITNVDRRMSKKGNPWAIVTIEDLESS 1066

Query: 1027 YEANFF 1032
             +  FF
Sbjct: 1067 IQCMFF 1072


>gi|317475168|ref|ZP_07934435.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA]
 gi|316908621|gb|EFV30308.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA]
          Length = 1274

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 376/1142 (32%), Positives = 592/1142 (51%), Gaps = 127/1142 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+           
Sbjct: 13   FVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNGGPK 72

Query: 61   ------KACAAGIQ-----------------------------PIIGCQLDIDMQDNLKM 85
                  K   AGI+                             PIIGC++ +  +    M
Sbjct: 73   GEIKDLKKRIAGIESGEIACEDKEAEIAACKEKIAEAENKLFKPIIGCEMYVARR---TM 129

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
              +   P  +   +++L    +GY  LI+LVSR + +    +  R   + L++   EGLI
Sbjct: 130  DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTMGYYMRP-RTDRNELEKY-HEGLI 187

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY---- 195
            + +    G I +    +    AE+ +  +K LFGD  Y+ LQRH+       ++ Y    
Sbjct: 188  VCSACIGGEIPKKIINDQLDEAEEAVRWYKNLFGDDFYLELQRHKATVPRANHEAYPLQQ 247

Query: 196  -RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
               +++++ A  + + ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   ++
Sbjct: 248  KANAKLLEYAKKYGIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEWM 307

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298
            K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P                R+ EK
Sbjct: 308  KTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRKRYTEK 367

Query: 299  ECDDIQKEEEN----------ELRNKAVAGLE------------VRLAQGAIAKGYH--- 333
            +  D   ++EN          + + K + G +             +LA     + Y    
Sbjct: 368  DLFDEFTQDENGNVVLDEDAAKAKIKRLGGYDKLYRIKLEADYLAKLAFDGAKRLYGDPL 427

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392
            + + ++RL FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS  AY L I
Sbjct: 428  SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSAVAYCLGI 487

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V  KYG E+VA IIT+G++
Sbjct: 488  TKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTM 547

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSVD 509
              K A++DV R  ++P S+ DRL KL+P+  P   ++L  AIA     + A  + DP V 
Sbjct: 548  ATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEASPDPLVR 607

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEK 565
              L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE 
Sbjct: 608  DTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIED 667

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GLIK DFLGLKTL++++++++ +   RGVK+D+  I   D  TY L     T+G FQ E
Sbjct: 668  TGLIKMDFLGLKTLSIIKEAVENVRLHRGVKLDIDKISIKDPATYKLYCDGRTIGTFQFE 727

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+++  LK+
Sbjct: 728  SAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPIMEKYLKD 787

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI+G  KNG    
Sbjct: 788  TYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQKNGHDPK 847

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + ++  I K
Sbjct: 848  VLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLSDITTITK 907

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPF 862
               + +   I+++ P VN   + F V  +  I + L A+KGVG      IME    + P+
Sbjct: 908  LMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVHSIMEEREKNGPY 967

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQW 914
              + DF  RV+    N++ LE L  AG  D F    R Q           ++ + +Y   
Sbjct: 968  TGIFDFVQRVNLNSCNKKNLECLALAGGFDSFPELKREQYFAVNAKNEVFIETLVRYGNR 1027

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYK 972
             + ++     ++F  E     D  T E    E  S   R   E+ ++G Y S HPLD Y 
Sbjct: 1028 YQADKAAAVNSLFGGE--NVVDIATPEILPAERWSDLDRLNRERDLVGIYLSAHPLDEYS 1085

Query: 973  PILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +        E  A + G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1086 VVLEHVCNTHMAELEDKAALVGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAELP 1145

Query: 1031 FF 1032
            FF
Sbjct: 1146 FF 1147


>gi|312132448|ref|YP_003999787.1| dnae [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773120|gb|ADQ02608.1| DnaE [Bifidobacterium longum subsp. longum BBMN68]
          Length = 1185

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 362/1070 (33%), Positives = 565/1070 (52%), Gaps = 62/1070 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++P
Sbjct: 7    NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 66

Query: 70   IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            IIG +     +   QD  ++      Q +        I  L   AE  + L+ L+    +
Sbjct: 67   IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 126

Query: 122  LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +   + +R      + + T  +G+I  +G  SG I           A +    F+ +FG
Sbjct: 127  ANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +      ++ +A     PL+ATN+S ++  ED +A D ++ +   
Sbjct: 187  KDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSG 246

Query: 238  TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--APILPR 294
            + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H     +P+
Sbjct: 247  SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLAIAERCNVMFDDHEDGAFMPK 306

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            F   E  D    E +    K   GLE R        G    D  ++ D+E  VI +M+F 
Sbjct: 307  FPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFC 356

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+S
Sbjct: 357  GYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVS 416

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            +PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  ++
Sbjct: 417  LPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEK 476

Query: 475  LCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLY 522
            + K +P  PA      +SL  I D +         FRE   +DP   R+ E ++ +EGL 
Sbjct: 477  VTKALP--PAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLI 534

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTL 581
            R    HA   ++G  P++   P+    R+D  + T F     E  GL+K DFLGL  LT+
Sbjct: 535  RQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNLTI 592

Query: 582  LQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +L  +   G   +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++PD  
Sbjct: 593  IHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNF 652

Query: 641  EDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQ 694
             DI AL++LYRPGP  +D+   Y  RKNG +KI  IHP ++  LK    ET G+IIYQEQ
Sbjct: 653  NDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQ 712

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            V   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  ++++L 
Sbjct: 713  VQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILV 772

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  I
Sbjct: 773  PFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGI 832

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSR 871
            Q++ P VN    ++    + + + L AI+ VG      I+ A  + P   F +  DF  R
Sbjct: 833  QVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDFIRR 891

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V    LNRR++ESL+ AGA D    +R  L    +        +++ +     ++F+  +
Sbjct: 892  VPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAE 951

Query: 932  GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIKGY 983
               ++      +T+      +   +   E+ +LG Y S HPL   + I   LR+M I   
Sbjct: 952  DGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHL 1011

Query: 984  EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T+  G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1012 VDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061


>gi|282879110|ref|ZP_06287869.1| putative DNA polymerase III subunit alpha [Prevotella buccalis ATCC
            35310]
 gi|281298752|gb|EFA91162.1| putative DNA polymerase III subunit alpha [Prevotella buccalis ATCC
            35310]
          Length = 1235

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 376/1112 (33%), Positives = 569/1112 (51%), Gaps = 97/1112 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ-- 68
            FVHL VH+ YS+L+G   +  ++DK  AD    +AITD  N+F   EF   A     Q  
Sbjct: 4    FVHLHVHTYYSILDGQSPVKRLVDKAVADGMRGLAITDHGNMFGIKEFFDYANTVNKQLK 63

Query: 69   --------PIIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                    PI GC++ +  +    K+ + G     +   +++L     GY+ LI+LVS  
Sbjct: 64   ADGKQPFKPIFGCEMYVARRSRFDKVKDMGDM---SGYHLIVLAKNYRGYKNLIKLVSHA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +  ++G            E   E LI+ +   +G + R         A + +  +K++FG
Sbjct: 121  W--EEGYYMRPRTDREELEKYHEDLIVCSACLAGEVPRKIIAGDMAGAREAVEWYKRVFG 178

Query: 180  DRLYVNLQRHRGYD------------RYRESQVV-QLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ +QRH   D            + R +QV+  LA  + + +V TN+  F+ +E+ E
Sbjct: 179  DDYYLEIQRHEVKDPSIRANREAYPMQQRANQVIFNLAKEYGVKVVCTNDVHFVDKENAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    +    R   +   + K R EM SIFSD+PE + NT+EI  +      
Sbjct: 239  AHDHLLCLSTGKDLDDPTRMLYSKQEWFKTREEMNSIFSDVPETMANTLEILNKVETYSI 298

Query: 287  VHAPILPRF-----IEKECDDIQKEEENELRNKAVAG------LEVRLAQ------GAIA 329
             H PI+P F       KE D  QK  E +L  +          +    AQ      G   
Sbjct: 299  NHDPIMPNFPIPESFGKEEDWKQKFTEEDLLREFTTDENGENPMSEEDAQKRVDHLGGYE 358

Query: 330  KGYHAQ---DYRQ---------------------RLDFELNVIARMKFSGYFLIVADFIQ 365
            K Y  +   DY Q                     R+ FEL+V+  M F GYFLIV+DFI+
Sbjct: 359  KMYRIKFEADYLQHLAYEGAKPLYGDPLPKEVDDRIRFELHVMKTMGFPGYFLIVSDFIR 418

Query: 366  WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+S+PD D DF  
Sbjct: 419  AAREELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRISLPDIDTDFDD 478

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D R +V+++V +KYGHE  A IIT+GS+  K +++DV R  ++P  + + LCK IP    
Sbjct: 479  DGRGKVLKWVMDKYGHENCAHIITYGSMATKNSIKDVARVEKLPLERANALCKAIPERLP 538

Query: 485  HPVSLQAIADDSRFREARLADPSVD----RLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              + +          E ++A+ S D      ++ ++ LEG  R    HA G +I   P+S
Sbjct: 539  DKMKMNLNNAIKCTPELQMAEVSTDIRESNTIKYAKMLEGTVRGTGIHACGFIICRDPIS 598

Query: 541  QLVPM-------YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQR 592
              VP+       ++D +++   TQ++   IE+ GLIK DFLGLKTL+ L++++ +    +
Sbjct: 599  DWVPVSTADDPDFKDEKTN--CTQYDGHVIEETGLIKMDFLGLKTLSELKEAVKNVKLTK 656

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             + +DL  IP DD  TY L     T+G FQ ES+GM+  L  + P   ED+IA+ +LYRP
Sbjct: 657  NIDIDLDKIPIDDELTYKLYQEGRTIGTFQFESAGMQNYLRQLSPTKFEDLIAMNALYRP 716

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP+DNI  +  RK G+E+I    P+++  LK+T G+ +YQEQVM +++LL+ ++  E+D 
Sbjct: 717  GPMDNIPSFIARKKGEEEITYPIPVMERYLKDTYGITVYQEQVMLLSRLLANFTRGESDA 776

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LR+AMGKK K  +D  K +FI G  KNG  + +   I+    KFA Y FNKSHAA Y+ +
Sbjct: 777  LRKAMGKKKKAIVDAMKPKFIEGGKKNGYDENVLDKIWADWEKFASYAFNKSHAACYSWV 836

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG- 831
            ++QTA++K HYP EF+AA M+   D + +I K   + +   I  + P VN     F V  
Sbjct: 837  AFQTAYLKAHYPAEFMAAIMSRRKDQITEISKLMDECKSLRIATLGPDVNESYQKFGVNH 896

Query: 832  DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I + LAAIKG+G   A  I+ E  A   +  + DF  RVD  ++NR+  ESL  +G 
Sbjct: 897  KGEIRFGLAAIKGMGDAAATAIIQEREAHGLYQDIFDFAHRVDFTQVNRKAFESLALSGG 956

Query: 891  LDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
             D FG  R     +       +D + +Y Q  +  ++    ++F            + K 
Sbjct: 957  FDSFGIPRESYFTANSKGELFIDTLVRYGQLYQNKKSEIEHSLFGGVDAVEIATPPIPKP 1016

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE---SVATIRGNNIRLAAM 1000
             + ++  +   E  ++G Y S HPLD +  +L+ M      E        +  ++  A M
Sbjct: 1017 ELWSNIEKLNREHDLVGIYLSAHPLDEFSIVLKSMCNTSCTELGDKAELAKKADVVFAGM 1076

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   + K TR G   G+VT  + +   E  FF
Sbjct: 1077 ITEVKDKFTRTGKPCGFVTIEDFSGTGEIAFF 1108


>gi|322689545|ref|YP_004209279.1| DNA polymerase III subunit alpha [Bifidobacterium longum subsp.
            infantis 157F]
 gi|320460881|dbj|BAJ71501.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp.
            infantis 157F]
          Length = 1189

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 362/1070 (33%), Positives = 565/1070 (52%), Gaps = 62/1070 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++P
Sbjct: 11   NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 70

Query: 70   IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            IIG +     +   QD  ++      Q +        I  L   AE  + L+ L+    +
Sbjct: 71   IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 130

Query: 122  LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +   + +R      + + T  +G+I  +G  SG I           A +    F+ +FG
Sbjct: 131  ANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 190

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +      ++ +A     PL+ATN+S ++  ED +A D ++ +   
Sbjct: 191  KDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSG 250

Query: 238  TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--APILPR 294
            + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H     +P+
Sbjct: 251  SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLAIAERCNVMFDDHEDGAFMPK 310

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            F   E  D    E +    K   GLE R        G    D  ++ D+E  VI +M+F 
Sbjct: 311  FPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFC 360

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+S
Sbjct: 361  GYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVS 420

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            +PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  ++
Sbjct: 421  LPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEK 480

Query: 475  LCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLY 522
            + K +P  PA      +SL  I D +         FRE   +DP   R+ E ++ +EGL 
Sbjct: 481  VTKALP--PAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLI 538

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTL 581
            R    HA   ++G  P++   P+    R+D  + T F     E  GL+K DFLGL  LT+
Sbjct: 539  RQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNLTI 596

Query: 582  LQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +L  +   G   +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++PD  
Sbjct: 597  IHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNF 656

Query: 641  EDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQ 694
             DI AL++LYRPGP  +D+   Y  RKNG +KI  IHP ++  LK    ET G+IIYQEQ
Sbjct: 657  NDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQ 716

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            V   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  ++++L 
Sbjct: 717  VQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILV 776

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  I
Sbjct: 777  PFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGI 836

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSR 871
            Q++ P VN    ++    + + + L AI+ VG      I+ A  + P   F +  DF  R
Sbjct: 837  QVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDFIRR 895

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V    LNRR++ESL+ AGA D    +R  L    +        +++ +     ++F+  +
Sbjct: 896  VPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAE 955

Query: 932  GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIKGY 983
               ++      +T+      +   +   E+ +LG Y S HPL   + I   LR+M I   
Sbjct: 956  DGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHL 1015

Query: 984  EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T+  G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1016 VDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065


>gi|298252640|ref|ZP_06976434.1| DNA polymerase III, alpha subunit [Gardnerella vaginalis 5-1]
 gi|297533004|gb|EFH71888.1| DNA polymerase III, alpha subunit [Gardnerella vaginalis 5-1]
          Length = 1178

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 361/1068 (33%), Positives = 570/1068 (53%), Gaps = 69/1068 (6%)

Query: 17   HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
            H+ YSLL+GA  + +++ +      PA+AITD  N+  A E    A  AGI+PIIG +  
Sbjct: 4    HTHYSLLDGASKIPDLVARAKELGMPAVAITDHGNMHGAYEMWSTAVKAGIKPIIGIEAY 63

Query: 77   IDMQDNLKMTNQGKTPFPT-------------VPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            +  +   +  ++ +  + T             +  + L      G   L++  S   L  
Sbjct: 64   VTPETARQ--DKSRVHWGTEDQRADDVSGGGLITHMTLWAENDTGLTNLLKASSVANLEG 121

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182
            +  +  R+    L    ++G+I  +G  SG I         + A +    F+ +FG D  
Sbjct: 122  RVMRYPRMDKDVLSTY-SKGVIASSGCPSGIIQTRLRLGQFKEALRAAGEFQDIFGRDNF 180

Query: 183  YVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ L  H      R ++ ++++A     PL+ATN+  ++ EED EA D ++ +   + + 
Sbjct: 181  FIELMNHGLSIETRVTKDLLEIAKKLNAPLLATNDLHYVHEEDREAQDAMLCINSGSRLD 240

Query: 242  QKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ--VHAPILPRFIEK 298
              DR +     +YLK+  +M  +F + PEA +NT+EIARRC+ +         +P+F   
Sbjct: 241  DPDRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGEDGAFMPQF--- 297

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +C +   E    L+ K   GLE R             +  ++ D+E  VI +M+F GYFL
Sbjct: 298  DCPEGWDETSLFLK-KVEEGLERRYNNNI------PMEVLKQADYECGVICQMQFCGYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++  L+FERFLNP+R+S+PD 
Sbjct: 351  VVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLNPERVSLPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF  D R +V+ YV  KYG ++VAQ + +G+++ K AL+D  R +   +S  +++ K+
Sbjct: 411  DVDFDPDGRAKVLEYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKITKV 470

Query: 479  IPNDPA---HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAST 527
            +P  PA     +SL  I D+          FRE    DP   R+ E ++ +EGL R    
Sbjct: 471  LP--PAKNGKDMSLHDIFDEKSKRYAEAREFREMYDTDPDTHRITEEAKGIEGLIRQTGV 528

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            HA   ++G  P++   P+    R+D  + T F     E  GL+K DFLGL  LT+++ +L
Sbjct: 529  HACATIMGSEPITNTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNLTVIRDTL 586

Query: 587  DFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
              +   G   +D + IP DD  TY LL+   TLG+FQL+S GMR  L  ++PD   DI A
Sbjct: 587  RNIENNGKDPIDYTKIPLDDKATYQLLSRGDTLGVFQLDSDGMRALLRTLKPDNFNDISA 646

Query: 646  LVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLI-DPM---LKETQGVIIYQEQVMQIA 699
            L++LYRPGP  +D+   Y  RKNG + I+ IHP + +P+   L ET G+I+YQEQV   A
Sbjct: 647  LIALYRPGPMDMDSHTNYAKRKNGLQDIIPIHPEVAEPLKEVLDETYGLIVYQEQVQSAA 706

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            ++L+GYSL +ADVLRRAMGKK  E + K++  F  G   +G S+  A  ++++L  F+ Y
Sbjct: 707  RILAGYSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKAHGYSEEAAQAVWDVLVPFSGY 766

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNK+H+AAY +ISY TA++KTHYPVEF+AA +  E  N +K   +  +AR+  IQ++ P
Sbjct: 767  AFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRMGIQVLQP 826

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKP-FDSLEDFCSRVDSKKL 877
             VN   +++    + + + L AI+ VG      I+ E   ++  F +  DF  RV    L
Sbjct: 827  DVNESVLEYSAVGDVVRFGLGAIRNVGDKAVNDIITEREGERGRFVNFMDFVQRVPISAL 886

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--------- 928
            NRR++ESL+ AGA D    +R  L Q  D        +++ +     ++FA         
Sbjct: 887  NRRLVESLIKAGAFDSIDSNRRALFQICDPAIDSVIALKRKQAEGQFDLFADLDSSSDSD 946

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIKGYEE 985
             + G    +IT+      +   +   E+ +LG Y S HPL     +   LR+M I    +
Sbjct: 947  DDNGMGDMQITVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLADLREMSIAQLID 1006

Query: 986  SVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T+  G  + +A +V S  ++ +RKG+    VT  +     +  FF
Sbjct: 1007 RARTMSDGQQVTIAGLVTSVDRRVSRKGNAWAIVTVEDMESSIQCMFF 1054


>gi|240167939|ref|ZP_04746598.1| DNA polymerase III subunit alpha [Mycobacterium kansasii ATCC 12478]
          Length = 1183

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 369/1078 (34%), Positives = 571/1078 (52%), Gaps = 74/1078 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL  H+ YS+L+GA  +N +L ++   Q PAI +TD  N+F A EF   A  AGI
Sbjct: 6    SRSFVHLHNHTEYSMLDGAAKINPMLAEVERLQMPAIGMTDHGNMFGASEFYNSATQAGI 65

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS--------------IVLLVSTAEGYQRLI 113
            +PIIG +  I            +  F   PS              + ++   A G + L 
Sbjct: 66   KPIIGVEAYIAPASRFDT----RRIFWGDPSQKADDISGSGSYTHLTMMAENATGLRNLF 121

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +L S      Q  +  R+    + E   EG+I+ TG  SG +         + A +    
Sbjct: 122  KLSSLASFEGQLSKWSRMDAELIAE-HAEGIIITTGCPSGEVQTRLRLGQEREALEAAAR 180

Query: 174  FKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            ++++ G +  ++ L  H    +R     ++ +  T  +P +ATN+  +++ +    H+ L
Sbjct: 181  WREIVGPENYFLELMDHGLTIERRVREGLLHIGRTLNIPPLATNDCHYVTRDAAHNHEAL 240

Query: 232  MAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHA 289
            + V     +S  +R +   D +YLK+ +EM  I+ D +P A ++T+ IA R      V  
Sbjct: 241  LCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWT 300

Query: 290  PI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
            P   +P F   +  D      + LR++  AGL  R   G  A       Y  R D+E++V
Sbjct: 301  PRDRMPVFPVPDGHD----PASWLRHEVAAGLRRRFPDGPPAS------YVTRADYEIDV 350

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I    F  YFLIVAD I +AK   I VGPGRGS AGS+ AYAL ITDIDP+   LLFERF
Sbjct: 351  ICAKGFPSYFLIVADLIGYAKSVGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERF 410

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL-- 465
            LNP+R SMPD DIDF   RR E++RY  +K+GH+RVAQ+ITFG+++ KAAL+D  R    
Sbjct: 411  LNPERTSMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYG 470

Query: 466  QMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--RFREARL------ADPSVDRLLEISQ 516
            Q  ++  DR+ K +P    A  + L  I D +  R++EA         DP V  + + + 
Sbjct: 471  QPGFAIADRITKALPPAIMAKDIPLSGITDPAHERYKEAAEVRGLIETDPDVRTIYQTAL 530

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             LEGL R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL
Sbjct: 531  GLEGLIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGL 590

Query: 577  KTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            + LT++  ++D + A +G+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  M
Sbjct: 591  RNLTIIGDAIDNIKANKGIDLDLESVPLDDKPTYELLGRGDTLGVFQLDGGPMRDLLRRM 650

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVI 689
            QP   EDI+A+++LYRPGP+       Y +RKNG++ I  IHP L +P+   L ET G+I
Sbjct: 651  QPTGFEDIVAVLALYRPGPMGQNAHNDYADRKNGRQAIKPIHPELAEPLEEILAETYGLI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQ+M+IAQ ++GYSL+ AD+LR+AMGKK +E +DK+ E F  G   NG S      +
Sbjct: 711  VYQEQIMRIAQKVAGYSLARADILRKAMGKKKREVLDKEYEGFAQGMQANGFSSGAIKAL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++ +  FADY FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D 
Sbjct: 771  WDTILPFADYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADC 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDF 868
            R+  I ++PP VN   ++F      I Y L A++ VG      +++  +DK  F    D+
Sbjct: 831  RKLGITVLPPDVNESGLNFASVGEDIRYGLGAVRNVGANVVGSLIQTRSDKGKFTDFSDY 890

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL-LQSLDNIQKYAQWVEKNRTNKHENIF 927
             +++D    N++V ESL+ AGA D  G++R  L L   D +       +     + +   
Sbjct: 891  LNKIDISACNKKVTESLIKAGAFDSLGHARKGLFLVHTDAVDSVLGTKKAEAMGQFDLFG 950

Query: 928  AHEKGT------FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
              + GT      F+ K+  +++  ++   +   E+ +LG Y SGHPL+    +L      
Sbjct: 951  GSDDGTGAADPVFTIKVPDDEWEDKH---KLALEREMLGLYVSGHPLNGVAHLLAGQ--- 1004

Query: 982  GYEESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + ++  I   +      +R+  ++ S  ++  + G         +     E  FFP
Sbjct: 1005 -VDTAIPAILDGDVPNDTQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1061


>gi|308177849|ref|YP_003917255.1| DNA polymerase III subunit alpha [Arthrobacter arilaitensis Re117]
 gi|307745312|emb|CBT76284.1| DNA polymerase III subunit alpha [Arthrobacter arilaitensis Re117]
          Length = 1169

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 369/1041 (35%), Positives = 553/1041 (53%), Gaps = 69/1041 (6%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDI---- 77
            +L+GA  L  +  +       A+AITD   LF A +F ++A  AG++PIIG +  +    
Sbjct: 1    MLDGAARLGELFAEANRQDMKALAITDHGYLFGAFDFWRQATGAGVKPIIGVEAYVTPGT 60

Query: 78   --DMQDNLKMTNQGKTPFPTVPS------IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
              D +  +K           V        + LL    +G   L +  SR  L     +  
Sbjct: 61   ARDDKTRVKWRTDESQKGDDVSGGGLYNHMTLLSYNNKGMDNLFKGSSRASLDSVFGKYP 120

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R     L E   EG+I  TG  SG +           A+      + LFG   Y      
Sbjct: 121  RWDRELLNE-HHEGIIATTGCPSGEVQTKLRLGQYDAAKAAAAELQDLFGKENYFCEIMD 179

Query: 190  RGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             G +  R     +++LA   ++PLVATN+  +  E D +AH+ L+A+   + + +    +
Sbjct: 180  HGLEIERRITKDLLRLAKELDIPLVATNDLHYTHESDAKAHEALLAINSGSTLDEPTYDQ 239

Query: 248  -------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                       +YLK+  EM  +F +LPEA +NT+ IA R       +A  +P+F     
Sbjct: 240  GGSRFAFSGTGYYLKSAREMRELFKELPEACDNTLAIADRVEVSFDTNANYMPKFPCPPG 299

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +D    E + L  +   GL  R   G        +  R++ D+EL+VI +M F GYFL+V
Sbjct: 300  ED----ETSWLIKEVDKGLHYRYPNGI------PEASRKQADYELDVIIKMGFPGYFLVV 349

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFI W+K + I VGPGRGSGAGS+ AYA+ ITD+DPL   L+FERFLNP+R+SMPDFD+
Sbjct: 350  ADFINWSKDHGIRVGPGRGSGAGSMVAYAMRITDLDPLVHGLIFERFLNPERVSMPDFDV 409

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR EVIRYV  KYG ERV+ I+T+GS++ K AL+D  R L  P+S  + L K +P
Sbjct: 410  DFDDRRRSEVIRYVTEKYGDERVSMIVTYGSIKTKQALKDSSRVLGYPFSMGESLTKALP 469

Query: 481  ----------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
                      ND  +P S +  ++   FR     DP   R+ E ++ LEGL R    HAA
Sbjct: 470  PAVMAKDIPLNDIDNPES-KRYSEAGDFRNLVANDPEAARVFETAKGLEGLKRQWGVHAA 528

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+++   P+  +VP+ R ++    +TQF+    E  GLIK DFLGL+ LT++  +L+ + 
Sbjct: 529  GVIMSSDPIIDVVPIMRRIQDGQVITQFDYPTCEGLGLIKMDFLGLRNLTIISDALENIE 588

Query: 591  -QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
               G K+DL  +  +D E Y+LL    TLG+FQL+   MR  L+ M+PD  EDI A+++L
Sbjct: 589  YNTGTKIDLETLTIEDPEAYNLLARGDTLGVFQLDGGPMRSLLKMMRPDNFEDISAVIAL 648

Query: 650  YRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQVMQIAQLLS 703
            YRPGP+  ++   Y  RK G +++  IHP L +P+   L  T G+I+YQEQVM IAQ L+
Sbjct: 649  YRPGPMGANSHTNYALRKTGLQEVTPIHPELAEPLAEILGGTYGLIVYQEQVMAIAQKLA 708

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GYSL +AD+LRRAMGKK K E+DKQ   F  G + NG S      ++++L  F+DY FNK
Sbjct: 709  GYSLGQADILRRAMGKKKKSELDKQFAGFKQGMNDNGYSDAAVQTLWDILLPFSDYAFNK 768

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            +H+AAY V+SY TA++K HYP E++AA +T   D+ +K+  +  + R   I ++PP VN 
Sbjct: 769  AHSAAYGVVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLALYLNECRHIGITVLPPDVNE 828

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVL 882
              ++F      I + + AI+ VGT     ++EA A+K  ++   DF  +V +   N+R +
Sbjct: 829  SALNFTPVGKDIRFGMGAIRNVGTNAVSGMVEARAEKGNYNDFNDFLGKVPAVVCNKRTI 888

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKIT 939
            ESL+ AGA D   + R  L+   +        V++N      ++F+    E  + S  + 
Sbjct: 889  ESLIKAGAFDSMKHPRRALVAIHEEAVDSVIQVKRNEAANQFDLFSALGAEDSSESMHVA 948

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHP-------LDVYK--PILRKMGIKGYEESVATI 990
            +      +   +   E+ +LG Y S HP       LD Y   P+   +   G ++     
Sbjct: 949  IPDLPDWDKKEKLAYERDMLGLYVSDHPLQGLGSALDQYADMPVTHVLSDDGPQD----- 1003

Query: 991  RGNNIRLAAMVVSKQQKKTRK 1011
             G+ I +A M+   Q++  +K
Sbjct: 1004 -GHIISIAGMISGLQRRIAKK 1023


>gi|256379743|ref|YP_003103403.1| DNA polymerase III subunit alpha [Actinosynnema mirum DSM 43827]
 gi|255924046|gb|ACU39557.1| DNA polymerase III, alpha subunit [Actinosynnema mirum DSM 43827]
          Length = 1176

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 372/1084 (34%), Positives = 567/1084 (52%), Gaps = 88/1084 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SF HL VH+ YS+L+GA  L ++  +       A AITD  N++ A +F ++A AAG+
Sbjct: 2    SDSFAHLHVHTEYSMLDGAAKLKDMFAECERLGMTAAAITDHGNMYGAYDFFRQATAAGV 61

Query: 68   QPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELV 116
            +P+IG +  +  + + N K    G  P      +          +   T +G   L++  
Sbjct: 62   KPVIGIEAYMAPESRFNKKRVTWGD-PGQKADDVSASGAYTHQTIWARTVDGLHNLMKCS 120

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            SR     Q  +  R+    L E  ++GL+  TG  SG +         + A +    +++
Sbjct: 121  SRASTEGQLGKWPRMDAELLAE-HSKGLMATTGCPSGEVQTRLRLGHEKEAIEAAGKWRE 179

Query: 177  LFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            ++G D  +V L  H    +R     +V +A   ++P V TN+S +   ED EAH+ L+ V
Sbjct: 180  IYGADNFFVELMDHGIELERRVRDGLVDIARKLDIPFVVTNDSHYTYAEDREAHEALLCV 239

Query: 235  AHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCS----FILQV 287
                 +    R +     +YLK+  EM +I S     E   NT+ +A +      F  Q 
Sbjct: 240  QTGKTLQDPSRFKFDGTGYYLKSPQEMYAIDSSDAWQEGCRNTLLVAEKVDTTDMFAFQ- 298

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
               ++PR+   E       E +  R +   G+  R  +G        + + ++++FE+ V
Sbjct: 299  --NLMPRYPVPEG----MTEADYFREQVWEGMRRRFPEGV------DEVHTKQVEFEIGV 346

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I +M F  YFL+VADFI WAK+N I VGPGRGS AG++ AYA+ ITD+DPL   L+FERF
Sbjct: 347  ILQMGFPSYFLVVADFINWAKENGIRVGPGRGSAAGALIAYAMGITDLDPLAHGLIFERF 406

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL-- 465
            LNPDR+S PD DIDF + RR +VIRYV +K+G ++VAQ+ITFG+++AKAA++D  R L  
Sbjct: 407  LNPDRVSPPDIDIDFDERRRGDVIRYVTDKWGDDKVAQVITFGTIKAKAAIKDSARVLYG 466

Query: 466  QMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLL 512
            Q  Y+  DR+ K +P              DP H    +  A+ S  R     DP V  ++
Sbjct: 467  QPGYAVADRISKAMPPAVMGKDIPLSGIFDPQH----KRYAEASEVRGLYDTDPQVKEII 522

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            +  + LEGL R+A  HA  +++   PL   +P+++  +    +TQF+    E  GL+K D
Sbjct: 523  DTGRGLEGLIRNAGVHACAVIMSAEPLMDHIPVWKRPQDGSIITQFDYPTCETLGLLKMD 582

Query: 573  FLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGL  LT +  +L  +A  G + VDL  +   D +TY LL+   TLG+FQL+   MR  
Sbjct: 583  FLGLSNLTTIDDALKNMAINGKEPVDLDKLELTDKKTYQLLSKGDTLGVFQLDGGPMRDL 642

Query: 632  LEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKET 685
            L  M+PD  EDI A+ +LYRPGP+  ++   Y  RKN  ++I  IHP     ++ +L  T
Sbjct: 643  LRLMRPDNFEDISAVGALYRPGPMGANSHTNYALRKNKLQEITPIHPSLAEALEDILGTT 702

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+I+YQEQVM IAQ L+GY+L +AD+LRRAMGKK KE +DK+   F +G   NG     
Sbjct: 703  YGLIVYQEQVMAIAQKLAGYTLGQADLLRRAMGKKKKEILDKEFAGFEAGMLANGFPADA 762

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               ++E+L  FADY FNK+H+AAY ++SY TA++K +YP EF+AA +T   DN +K   +
Sbjct: 763  IKTLWEILVPFADYAFNKAHSAAYGLVSYWTAYLKANYPAEFMAALLTTNSDNKDKSAIY 822

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDS 864
              + R+  I ++PP VN    +F      + + L AI+ VG      I++A  +K  F  
Sbjct: 823  LAECRRMGITVLPPDVNESEREFVAVGEDVRFGLGAIRNVGANVVDAIIKARKEKGRFTD 882

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL----LQSLDNIQKYAQWVEKNRT 920
              DF  +VD+   N++V+ESL+ AGA D   + R  L    ++++D I       +K   
Sbjct: 883  FSDFLRKVDATVCNKKVVESLIKAGAFDSLNHPRKGLHMVHVEAVDAI----MLTKKEEA 938

Query: 921  NKHENIF-----AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
                ++F           F  +I  E +    S  +   E+ +LG Y SGHPL+  + +L
Sbjct: 939  RGQFDLFGDGGDDGNGSVFDVRIPEEHW---ESKHQLTLEREMLGLYVSGHPLNGVEQVL 995

Query: 976  RKMGIKGYEESVATI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                    + S+A I       G  + L  ++ S  ++  + G         + A   E 
Sbjct: 996  DSYS----DASIARILEGDVADGTQVTLGGILASVTRRVNKNGEPWASAMLEDLAGGIEV 1051

Query: 1030 NFFP 1033
             FFP
Sbjct: 1052 LFFP 1055


>gi|282862139|ref|ZP_06271202.1| DNA polymerase III, alpha subunit [Streptomyces sp. ACTE]
 gi|282563164|gb|EFB68703.1| DNA polymerase III, alpha subunit [Streptomyces sp. ACTE]
          Length = 1179

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 356/1076 (33%), Positives = 562/1076 (52%), Gaps = 72/1076 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VH+ YSLL+GA  L ++ +         IA+TD  NL  A +F   A  AG+ 
Sbjct: 4    PPFTHLHVHTQYSLLDGAARLKDMFEAANTMGMSHIAMTDHGNLHGAYDFFHSAQKAGVT 63

Query: 69   PIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSR 118
            PIIG +  +  +    K   Q   P      +          +  + + G   L +L S 
Sbjct: 64   PIIGIEAYVAPESRKHKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFKLSSD 123

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             Y     ++  R+    + +  +EGLI  TG  SG +           A +    +K +F
Sbjct: 124  AYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDYKDIF 182

Query: 179  GD-RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            G+ R ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+ +  
Sbjct: 183  GEGRYFLELMDHGIEIERRVRDGLLEIGRKLGIPPLVTNDSHYTYAHEATAHDALLCIQT 242

Query: 237  STVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHA-PIL 292
               +S  DR R     +YLK   EM ++ S     E   NT+ +A++           ++
Sbjct: 243  GKNLSDPDRFRFDGTGYYLKTTDEMYAVDSSDAWQEGCANTLLVAQQIDTTGMFEKRDLM 302

Query: 293  PRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            P+F I     ++   +E           EVR+       G   +D +++ ++E+++I +M
Sbjct: 303  PKFEIPDGFTEVTWFQE-----------EVRVGMARRYPGGVPEDRQKQAEYEMDIIIQM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPITHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+ 
Sbjct: 412  RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
             DRL K +P              DP HP   +A       R     +P V ++++ ++ +
Sbjct: 472  GDRLTKAMPADVLGKGIDLSGITDPKHPRYGEA----GEIRGMYENEPDVKKVIDTAKGV 527

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ 
Sbjct: 528  EGLVRQMGVHAAGVIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRN 587

Query: 579  LTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  ++  + A +G+ +++  +P DD +TY LL    TLG+FQ +   MR  L  MQP
Sbjct: 588  LTIMDDAIKMVKANKGIDLEMLALPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQP 647

Query: 638  DCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIY 691
            D  EDI A+ +LYRPGP  +++   Y  RKNG+++I  IHP ++  LKE    T G+I+Y
Sbjct: 648  DNFEDISAVSALYRPGPMGMNSHTNYAERKNGRQEITPIHPELEEPLKETLGLTYGLIVY 707

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F +GA KNG S      +++
Sbjct: 708  QEQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVLFQAGAKKNGYSDAAIQALWD 767

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +L  FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+
Sbjct: 768  VLVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRR 827

Query: 812  FNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFC 869
              I+++PP+VN    +F   GD+ I + L A++ VG      I+    A   + +  DF 
Sbjct: 828  MGIKVLPPNVNESESNFAAQGDDVILFGLTAVRNVGQNVVDSIIRCRKAKGKYSTFPDFL 887

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             +V++   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F  
Sbjct: 888  DKVEAVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGG 947

Query: 930  EKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                 SD+       VE S + +E       E+ +LG Y S HPL   + +L        
Sbjct: 948  MGEEESDEPGF-GLDVEFSDIEWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKS---- 1002

Query: 984  EESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + S++ + G        + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1003 DASISQLTGGEHADGAIVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|23464753|ref|NP_695356.1| DNA polymerase III subunit alpha [Bifidobacterium longum NCC2705]
 gi|23325323|gb|AAN23992.1| DNA polymerase III alpha subunit [Bifidobacterium longum NCC2705]
          Length = 1189

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 363/1070 (33%), Positives = 565/1070 (52%), Gaps = 62/1070 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++P
Sbjct: 11   NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 70

Query: 70   IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            IIG +     +   QD  ++      Q +        I  L   AE  + L+ L+    +
Sbjct: 71   IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 130

Query: 122  LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +   + +R      + + T  +G+I  +G  SG I           A +    F+ +FG
Sbjct: 131  ANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 190

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +      ++ +A     PL+ATN+S ++  ED  A D ++ +   
Sbjct: 191  KDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAGAQDAMLCINSG 250

Query: 238  TVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--APILPR 294
            + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H     +P+
Sbjct: 251  SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMPK 310

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            F   E  D    E +    K   GLE R        G    D  ++ D+E  VI +M+F 
Sbjct: 311  FPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFC 360

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+S
Sbjct: 361  GYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVS 420

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            +PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  ++
Sbjct: 421  LPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEK 480

Query: 475  LCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLY 522
            + K +P  PA      +SL  I D +         FRE   +DP   R+ E ++ +EGL 
Sbjct: 481  ITKALP--PAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIEGLI 538

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTL 581
            R    HA   ++G  P++   P+    R+D  + T F     E  GL+K DFLGL  LT+
Sbjct: 539  RQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNLTI 596

Query: 582  LQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +L  +   G   +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++PD  
Sbjct: 597  IHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNF 656

Query: 641  EDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQ 694
             DI AL++LYRPGP  +D+   Y  RKNG +KI  IHP ++  LK    ET G+IIYQEQ
Sbjct: 657  NDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQ 716

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            V   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  ++++L 
Sbjct: 717  VQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILV 776

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  I
Sbjct: 777  PFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGI 836

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSR 871
            Q++ P VN    ++    + + + L AI+ VG      I+ A  + P   F +  DF  R
Sbjct: 837  QVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDFIRR 895

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V    LNRR++ESL+ AGA D    +R  LL   +        +++ +     ++F+  +
Sbjct: 896  VPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDLFSDAE 955

Query: 932  GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIKGY 983
               ++      +T+      +   +   E+ +LG Y S HPL   + I   LR+M I   
Sbjct: 956  DGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHL 1015

Query: 984  EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T+  G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1016 VDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065


>gi|283456439|ref|YP_003361003.1| DnaE DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
 gi|283103073|gb|ADB10179.1| DnaE DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
          Length = 1188

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 353/1077 (32%), Positives = 567/1077 (52%), Gaps = 69/1077 (6%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  H+ YSLL+GA  + +++ +      PA+ ITD  N+  A E    A  AGI+PII
Sbjct: 1    MQLHNHTHYSLLDGASKIPDLVKRAKELNMPAVGITDHGNMHGAYEMWSTAVNAGIKPII 60

Query: 72   GCQ----------------LDIDMQDNLKMTNQGKTPFPT-----VPSIVLLVSTAEGYQ 110
            G +                 D +   +L   ++ + P        +  + +   T EG  
Sbjct: 61   GIEAYVTPETARQDPTRVSWDTNWNPDLDPNHRKRNPNDVSGGGLITHLTMWAETDEGLV 120

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L++  +   L  +  +  R+    L +  ++G+I  +G  SG I           A + 
Sbjct: 121  NLMKASTDANLEGRVMRYPRMDKEILSKY-SKGIIASSGCPSGIIQTRLLLGQFDEALRA 179

Query: 171  LLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
                + +FG D  Y+    H    +R     ++ +A     PL+ATN+S ++  ED  A 
Sbjct: 180  AGELQDIFGRDNFYIEFMDHGLNIERQVTDGLLDIAKKLNAPLLATNDSHYVRAEDAGAQ 239

Query: 229  DVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            D ++ +   + + +  R +     +YLK+  EM  +F DLPEA +NT+EIA RC+ +   
Sbjct: 240  DAMLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDLPEACDNTLEIAERCNVMFDD 299

Query: 288  H--APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            H     +P+F   +C +   E    L+ K   GLE R        G    +  ++ D+E 
Sbjct: 300  HEDGAFMPQF---DCPEGWDETSLFLK-KVEEGLEKRY------DGNPPIEVLKQADYEC 349

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++  L+FE
Sbjct: 350  GVICQMQFCGYFLVVADYINWAKTHGVMVGPGRGSAAGAMVAYAMGITELDPIQHGLIFE 409

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+S+PD D+DF  D R  V+ YV  KYG ++VAQ + +G+++ K AL+D  R +
Sbjct: 410  RFLNPERVSLPDIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIM 469

Query: 466  QMPYSQVDRLCKLIP-------NDPAHPV---SLQAIADDSRFREARLADPSVDRLLEIS 515
               +S  +R+ K +P       + P H +   + +  A+   FRE   +DP   R+ + +
Sbjct: 470  GFDFSMGERVTKALPPAQTGGKDIPLHDIFDPASKRYAEAREFRELYDSDPDAKRVTDEA 529

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFL 574
              +EGL R    HA   ++G  P++   P+    R+D  V T       E  GL+K DFL
Sbjct: 530  MGIEGLIRQTGVHACATIMGSEPITNTSPLLE--RTDGTVTTTLEYHTCETLGLVKMDFL 587

Query: 575  GLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL  LT+++ +L+ +   G  ++D + IP DD  TY LL+   TLG+FQL+S GMR  L+
Sbjct: 588  GLSNLTVIRDTLNNIEANGKDRIDHTRIPLDDKATYELLSRGDTLGVFQLDSDGMRSLLK 647

Query: 634  GMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLI-DPM---LKETQG 687
             ++P    DI AL++LYRPGP  +D+   Y  RKNG +KI  IHP + +P+   L ET G
Sbjct: 648  TLKPSNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEVLDETYG 707

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  A 
Sbjct: 708  LIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGYSQEAAQ 767

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  
Sbjct: 768  AVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDKTALYLG 827

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME--ASADKPFDSL 865
            +AR+  IQ++ P VN    ++    + + + L AI+ VG      I++   S    + + 
Sbjct: 828  EARRMGIQVLSPDVNESVFEYSAVGDVVRFGLGAIRNVGRNAVDDIIKERESGHGKYVNF 887

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DF  RV    LNRR++ESL+ AGA D    +R  L    +        +++ +     +
Sbjct: 888  PDFVRRVPLSALNRRLVESLIKAGAFDSVDPNRRALFTIHEAAINSVVGIKRKQAEGQFD 947

Query: 926  IF------AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LR 976
            +F      A + G     +++      +   +   E+ +LG Y S HPL   + +   LR
Sbjct: 948  LFSDLDDSAEQDGMGDAMVSVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVLSSLR 1007

Query: 977  KMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +M I    +   T+  G  + +A ++ +  ++ ++KG+    VT  +     +  FF
Sbjct: 1008 EMSIAHLIDRAGTMPDGQQVTVAGLITNVDRRVSKKGNPWAIVTIEDLESSIQCMFF 1064


>gi|320449185|ref|YP_004201281.1| DNA polymerase III subunit alpha [Thermus scotoductus SA-01]
 gi|320149354|gb|ADW20732.1| DNA polymerase III, subunit alpha [Thermus scotoductus SA-01]
          Length = 1646

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 352/918 (38%), Positives = 515/918 (56%), Gaps = 86/918 (9%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           F HL  H+ +SLL+GA  L+++L+  K  + + PA+A+TD  NLF A+EF +KA A GI+
Sbjct: 6   FAHLHQHTQFSLLDGAAKLSDLLEWVKTVSPEDPALAMTDHGNLFGAVEFYKKATAMGIK 65

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PIIG +  +  +       +GK        + LL    +GYQ L+ L SR YL +   + 
Sbjct: 66  PIIGYEAYVAAESRFD-RKRGKGLDGGYFHLTLLARDFKGYQNLVRLASRAYL-EGFYEK 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            RI    L+E   EGLI L+G     I +    +   +AE RL  +  +FGDR ++ +Q 
Sbjct: 124 PRIDREILRE-HAEGLIALSGCLGAEIPQFILQDRLDLAEARLNEYLSIFGDRFFIEIQN 182

Query: 189 HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H   ++ + +QV+ + A  + L +VATN+  ++ +ED  AH+VL+A+   + +   +R R
Sbjct: 183 HGLPEQRKVNQVLREFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKSTLDDPERWR 242

Query: 248 VTPDH-YLKNRSEMVSIFSDLP---EALENTVEIARRCSFILQVHAPI---LPRFIEKE- 299
              D  Y+K   EM ++  +     E  +NTVEIAR C   L +   +   +PRF   E 
Sbjct: 243 FPCDEFYVKTPEEMRAMLPEEEWGDEPFDNTVEIARMCEVDLPIGDKMVYRIPRFPLPEG 302

Query: 300 ----------------------------------CDDIQKEEENELRNKAVAGLEVRLAQ 325
                                                I    + E   +A+A +E +  +
Sbjct: 303 RTEAQYLRELTFKGLLSRYPDRITEGFYREVFRLLGKIPPHGDGEALAEALAQVEGKAWE 362

Query: 326 GAIAK--------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
             + K         + A+    R  +EL+VI RM F GYFLIV D+I WA++N I VGPG
Sbjct: 363 ALLPKLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARRNGISVGPG 422

Query: 378 RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
           RGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF    RD VI+YV+ +
Sbjct: 423 RGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYVRGR 482

Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDS 496
           YG E+VAQI TFGSL +KAAL+DV R   +P+ + + L KLIP     P  L +AI    
Sbjct: 483 YGEEKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLAEAIELVP 542

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
             R     DP V  ++E++ +LEGL RHAS HAAG+VI   PL+ LVP+ RD +   PVT
Sbjct: 543 ELRAEMEKDPRVREVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRD-QEGRPVT 601

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTK 615
           Q++M  +E  GL+K DFLGL+TLT L ++   + + +GV++D   +P DD +T+ LL   
Sbjct: 602 QYDMGAVEALGLLKMDFLGLRTLTFLDEAKKIVKESKGVELDYDRLPLDDPKTFALLARG 661

Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI- 674
            T G+FQLES GM   + G++P  +EDIIALVSLYRPGP+++I  Y  R +G+E +  + 
Sbjct: 662 ETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHHGQEPVSYVE 721

Query: 675 ----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
                  + P+L+ET G+ +YQEQ+MQIA  ++GYSL EAD+LRRAMGKK  EEM K +E
Sbjct: 722 FPHAERYLRPILEETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKKVEEMQKHRE 781

Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
           RF+ GA + G+ +  A  +F++L  FA+YGFNK       V+ Y+T  +    P+E +  
Sbjct: 782 RFVRGARERGVPEEEANRLFDMLEAFANYGFNKCLPGRARVLDYRTGKL---VPIEAIVR 838

Query: 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                    E    +     +  ++++P  V      F+ G   +Y        + T T 
Sbjct: 839 G--------EAKGVWVVSLDESTLRLVPRPV---VAAFQSGRAMVYR-------LRTATG 880

Query: 851 RHIMEASADKPFDSLEDF 868
           R ++EA+A+ P  + E +
Sbjct: 881 R-VLEATANHPLYTPEGW 897



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 105/277 (37%), Positives = 155/277 (55%), Gaps = 14/277 (5%)

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            + SHAAAY+++SYQTA++K HYPVEF+AA +T+E  + +K+ ++ +DAR   I+++PP +
Sbjct: 1238 HNSHAAAYSLLSYQTAYVKAHYPVEFMAALLTVERHDSDKVAEYIRDARAMGIEVLPPDI 1297

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRR 880
            N    DFKV    I + L+A+K VG   A+ I+ E     PF SL DF  R+D K +N+R
Sbjct: 1298 NRSGFDFKVVGEEILFGLSAVKNVGEGAAQAILAERERRGPFKSLGDFLKRLDEKVVNKR 1357

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKIT 939
             LESL+ AGA D FG  R +LL SLD + ++A    +   +    +FA  E+   ++ + 
Sbjct: 1358 TLESLIKAGAFDAFG-DRARLLASLDPLLRWAAESRERERSGMMGLFAEVEEPPLAEALP 1416

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NNI 995
            L++ +      R   E+  LG Y SGHP+  Y P LR++     EE    IRG      +
Sbjct: 1417 LDEIT------RLRYEKEALGIYVSGHPVLRY-PGLREVASCTLEELPDFIRGLPPRPRV 1469

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             LA MV    +K TR G  +   T S+     E   F
Sbjct: 1470 LLAGMVEEVARKPTRSGGMMARFTLSDETGALEVVVF 1506


>gi|213691712|ref|YP_002322298.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
            infantis ATCC 15697]
 gi|213523173|gb|ACJ51920.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
            infantis ATCC 15697]
          Length = 1185

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 362/1070 (33%), Positives = 566/1070 (52%), Gaps = 62/1070 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++P
Sbjct: 7    NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 66

Query: 70   IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            IIG +     +   QD  ++      Q +        I  L   AE  + L+ L+    +
Sbjct: 67   IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 126

Query: 122  LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +   + +R      + + T  +G+I  +G  SG I           A +    F+ +FG
Sbjct: 127  ANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +      ++ +A     PL+ATN+S ++  ED +A D ++ +   
Sbjct: 187  KDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSG 246

Query: 238  TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--APILPR 294
            + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H     +P+
Sbjct: 247  SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMPK 306

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            F   E  D    E +    K   GLE R        G    D  ++ D+E  VI +M+F 
Sbjct: 307  FPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFC 356

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+S
Sbjct: 357  GYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVS 416

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            +PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  ++
Sbjct: 417  LPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEK 476

Query: 475  LCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLY 522
            + K +P  PA      +SL  I D +         FRE   +DP   R+ E ++ +EGL 
Sbjct: 477  VTKALP--PAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLI 534

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTL 581
            R    HA   ++G  P++   P+    R+D  + T F     E  GL+K DFLGL  LT+
Sbjct: 535  RQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNLTI 592

Query: 582  LQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +L + +A     +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++PD  
Sbjct: 593  IHDTLKNIVANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNF 652

Query: 641  EDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQ 694
             DI AL++LYRPGP  +D+   Y  RKNG +KI  IHP ++  LK    ET G+IIYQEQ
Sbjct: 653  NDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQ 712

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            V   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  ++++L 
Sbjct: 713  VQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILV 772

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  I
Sbjct: 773  PFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGI 832

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSR 871
            Q++ P VN    ++    + + + L AI+ VG      I+ A  + P   F +  DF  R
Sbjct: 833  QVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDFIRR 891

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V    LNRR++ESL+ AGA D    +R  L    +        +++ +     ++F+  +
Sbjct: 892  VPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAE 951

Query: 932  GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIKGY 983
               ++      +T+      +   +   E+ +LG Y S HPL   + I   LR+M I   
Sbjct: 952  DGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHL 1011

Query: 984  EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T+  G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1012 VDRARTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSVQCMFF 1061


>gi|237718270|ref|ZP_04548751.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_2_4]
 gi|299147818|ref|ZP_07040881.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23]
 gi|229452454|gb|EEO58245.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_2_4]
 gi|298514001|gb|EFI37887.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23]
          Length = 1268

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 379/1145 (33%), Positives = 593/1145 (51%), Gaps = 132/1145 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+           
Sbjct: 4    FVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63

Query: 61   ---------------------------KACAAGI--------QPIIGCQLDIDMQD-NLK 84
                                        AC A I        +PIIGC++ +  +  +LK
Sbjct: 64   GEVKDLKKRIAGIEAGTIECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVARRTMDLK 123

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
               +GK P  +   +++L     GY  LI+LVS  +      +  R   S L++   EGL
Sbjct: 124  ---EGK-PDQSGYHLIVLAKNETGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR-- 196
            I+ +    G + +         AE+ +  +K LFGD  Y+ LQRH+       ++ Y   
Sbjct: 178  IICSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLELQRHKATVPRANHECYPLQ 237

Query: 197  ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A    + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKHLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P                +F E
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYREKFTE 357

Query: 298  KECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH-- 333
            K+  D          +  EE+ + + K + G +             +LA     + Y   
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
              ++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRLCKL+P+  P   ++L  AIA     + A  + DP +
Sbjct: 538  MATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASSDPLL 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R V+VD+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDISDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861
            K   + +   IQ + P VN   + F V  D  I + L A+KGVG    + IME    + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGDIRFGLGAVKGVGEAAVQSIMEERRKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEK----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
              + ++     ++F  E      T      +E++S  +   R   E+ ++G Y S HPLD
Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLD---RLNRERDLVGIYLSAHPLD 1074

Query: 970  VYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             +  +L  +        E  A + G  I +  +V S ++  ++ G+  G     + +   
Sbjct: 1075 EFSIVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGST 1134

Query: 1028 EANFF 1032
            E  F+
Sbjct: 1135 EIPFW 1139


>gi|167765014|ref|ZP_02437135.1| hypothetical protein BACSTE_03408 [Bacteroides stercoris ATCC 43183]
 gi|167697683|gb|EDS14262.1| hypothetical protein BACSTE_03408 [Bacteroides stercoris ATCC 43183]
          Length = 1274

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 374/1143 (32%), Positives = 594/1143 (51%), Gaps = 129/1143 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+           
Sbjct: 13   FVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 72

Query: 61   ---------------------------KACAAGI--------QPIIGCQLDIDMQDNLKM 85
                                        AC A I        +PIIGC++ +  +    M
Sbjct: 73   GEIKDLKKRIAGIESGEIECEDKEAEIAACRAKITEAENKLFKPIIGCEMYVARR---TM 129

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
              +   P  +   +++L    +GY  LI+LVSR + +    +  R   + L++   EGLI
Sbjct: 130  DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTMGYYMRP-RTDRNELEKY-HEGLI 187

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY---- 195
            + +    G + +    +  + AE+ +  +K LFGD  Y+ LQRH+       ++ Y    
Sbjct: 188  VCSACIGGEVPKKIINDQLEEAEEAIRWYKNLFGDDYYLELQRHKATVSRANHEAYPLQQ 247

Query: 196  -RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
               +++++ A  + + ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   ++
Sbjct: 248  KANAKLLEYARKYNIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEWM 307

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298
            K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P                ++ EK
Sbjct: 308  KTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRRKYTEK 367

Query: 299  ECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH--- 333
            +  D          +  EE  + + K + G E             +LA     + Y    
Sbjct: 368  DLFDEFTQDENGNVVLDEEAAKAKIKRLGGYEKLYRIKLEADYLAKLAFDGAKRLYGDPL 427

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392
            + + ++RL FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS  AY L I
Sbjct: 428  SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSAVAYCLGI 487

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V  KYG E+VA IIT+G++
Sbjct: 488  TKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTM 547

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSVD 509
              K A++DV R  ++P S+ DRL KL+P+  P   ++L  AIA     + A  + DP V 
Sbjct: 548  ATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEASPDPLVR 607

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEK 565
              L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE 
Sbjct: 608  DTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIED 667

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GLIK DFLGLKTL++++++++ +   RG+ +D+  I   D  TY L     T+G FQ E
Sbjct: 668  TGLIKMDFLGLKTLSIIKEAVENVRLHRGLSLDIDKISIKDPATYKLYCDGRTIGTFQFE 727

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+++  LK+
Sbjct: 728  SAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPIMEKYLKD 787

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI+G  KNG    
Sbjct: 788  TYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQKNGHDAK 847

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + ++  I K
Sbjct: 848  VLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLSDITTITK 907

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPF 862
               + +   I+++ P VN   + F V  +  I + L A+KGVG    + IME  A + P+
Sbjct: 908  LMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVQSIMEERAKNGPY 967

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQW 914
              + DF  RV+    N++ LE L  AG  D F    R Q           ++ + +Y   
Sbjct: 968  TGIFDFVQRVNLNACNKKNLECLALAGGFDSFPELKREQYFAVNTKNEVFIETLVRYGNR 1027

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYK 972
             + ++     ++F  E     D  T E    E  S   R   E+ ++G Y S HPLD Y 
Sbjct: 1028 YQADKAAAVNSLFGGE--NVVDIATPEIPQAERWSDLDRLNKERDLVGIYLSAHPLDEYA 1085

Query: 973  PILR---KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
             +L       +   E+  A + G  I +  +V S ++  ++ G+  G     + +   E 
Sbjct: 1086 VVLEYVCNTHMAELEDKTALV-GREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAEL 1144

Query: 1030 NFF 1032
             FF
Sbjct: 1145 PFF 1147


>gi|270294536|ref|ZP_06200738.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270276003|gb|EFA21863.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1265

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 377/1143 (32%), Positives = 591/1143 (51%), Gaps = 129/1143 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+           
Sbjct: 4    FVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63

Query: 61   ------KACAAGIQ-----------------------------PIIGCQLDIDMQDNLKM 85
                  K   AGI+                             PI+GC++ +  +    M
Sbjct: 64   GEIKDLKKRIAGIESGEIECEDKEAEIADCRAKMAEAESKLFKPIVGCEMYVARR---TM 120

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
              +   P  +   +++L    +GY  LI+LVS  +      +  R   S L++   EGLI
Sbjct: 121  DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGLI 178

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY---- 195
            + +    G + +    +  + AE+ +  +K LFGD  Y+ LQRH+       ++ Y    
Sbjct: 179  VCSACIGGEVPKKIINDQLEEAEEAVRWYKNLFGDDYYLELQRHKATVPRANHEAYPLQQ 238

Query: 196  -RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
               +++++LA  +++ ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   ++
Sbjct: 239  KANAKLLELARKYDIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEWM 298

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298
            K ++EM ++F D+PEAL NT+EI  +  +    HAPI+P                ++ EK
Sbjct: 299  KTKAEMNALFEDVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTEK 358

Query: 299  ECDDIQKEEENE----------------------LRNKAVAGLEVRLAQGAIAKGYH--- 333
            +  D   ++EN                        R K  A    +LA     K Y    
Sbjct: 359  DLFDEFTQDENGKVVLDEDAANAKIKRLGGYDKLYRIKLEADYLAKLAFDGAKKLYGDPL 418

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392
            + + ++RL FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS  AY L I
Sbjct: 419  SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSAVAYCLGI 478

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V  KYG E+VA IIT+G++
Sbjct: 479  TKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTM 538

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSVD 509
              K A++DV R  ++P S+ DRLCKL+P+  P   ++L  AIA     + A  + DP V 
Sbjct: 539  ATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASPDPLVR 598

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEK 565
              ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE 
Sbjct: 599  DTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIED 658

Query: 566  AGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GLIK DFLGLKTL+++++++ +    RG+++D+  I   D  TY L     T+G FQ E
Sbjct: 659  TGLIKMDFLGLKTLSIIKEAVANVRLHRGLELDIDKISISDPATYKLYCDGRTIGTFQFE 718

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+++  LK+
Sbjct: 719  SAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPIMEKYLKD 778

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FISG  KNG    
Sbjct: 779  TYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFISGGQKNGHDPK 838

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I K
Sbjct: 839  VLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLANITDITK 898

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPF 862
               + +   I  + P VN   + F V  +  I + L A+KGVG    + IME    + PF
Sbjct: 899  LMDECKAMGINTLGPDVNESNLKFTVNKEGNIRFGLGAVKGVGEGAVQSIMEEREKNGPF 958

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQW 914
              + DF  RV+    N++ LE L  AG  D F    R Q           L+ + +Y   
Sbjct: 959  KGIFDFVQRVNLTACNKKNLECLALAGGFDSFPELKREQYFAVNSKNEVFLETLVRYGNR 1018

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYK 972
             + ++     ++F  E     D  T E    E  S   R   E+ ++G Y S HPLD Y 
Sbjct: 1019 YQADQAAAANSLFGGE--NVVDIATPEIPVAERWSDLDRLNRERDLVGIYLSAHPLDEYS 1076

Query: 973  PILRKMG---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
             +L  +    +   E+  A + G  I +  +V + ++  ++ G+  G     + +   E 
Sbjct: 1077 VVLEHVCNTHMAELEDKTALV-GREITMGGIVTAVRRGISKNGNPYGIAKIEDYSGSAEL 1135

Query: 1030 NFF 1032
             FF
Sbjct: 1136 PFF 1138


>gi|293368783|ref|ZP_06615387.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD CMC
            3f]
 gi|292636088|gb|EFF54576.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD CMC
            3f]
          Length = 1268

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 379/1145 (33%), Positives = 593/1145 (51%), Gaps = 132/1145 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+           
Sbjct: 4    FVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63

Query: 61   ---------------------------KACAAGI--------QPIIGCQLDIDMQD-NLK 84
                                        AC A I        +PIIGC++ +  +  +LK
Sbjct: 64   GEVKDLKKRIAGIEAGTIECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVARRTMDLK 123

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
               +GK P  +   +++L     GY  LI+LVS  +      +  R   S L++   EGL
Sbjct: 124  ---EGK-PDQSGYHLIVLAKNETGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR-- 196
            I+ +    G + +         AE+ +  +K LFGD  Y+ LQRH+       ++ Y   
Sbjct: 178  IICSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLELQRHKATVPRANHECYPLQ 237

Query: 197  ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A    + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKHLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P                +F E
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357

Query: 298  KECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH-- 333
            K+  D          +  EE+ + + K + G +             +LA     + Y   
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
              ++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRLCKL+P+  P   ++L  AIA     + A  + DP +
Sbjct: 538  MATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASSDPLL 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R V+VD+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDISDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861
            K   + +   IQ + P VN   + F V  D  I + L A+KGVG    + IME    + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGDIRFGLGAVKGVGEAAVQSIMEERRKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEK----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
              + ++     ++F  E      T      +E++S  +   R   E+ ++G Y S HPLD
Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLD---RLNRERDLVGIYLSAHPLD 1074

Query: 970  VYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             +  +L  +        E  A + G  I +  +V S ++  ++ G+  G     + +   
Sbjct: 1075 EFSIVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGST 1134

Query: 1028 EANFF 1032
            E  F+
Sbjct: 1135 EIPFW 1139


>gi|310830390|ref|YP_003965491.1| hypothetical protein PPSC2_p0029 [Paenibacillus polymyxa SC2]
 gi|309249857|gb|ADO59423.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 1305

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 356/999 (35%), Positives = 551/999 (55%), Gaps = 58/999 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS YSLL+G   +++I+ K     + A AITD   +F  LE+ ++   AG  PI
Sbjct: 148  WADLHRHSGYSLLDGGSKISDIVRKT----EYAGAITDHGAMFGTLEYYKQMRKAGKLPI 203

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +   +     K  N           ++LL    EG++ L++L S+    +   +   
Sbjct: 204  LGFEAYAETIQGEKKGNH----------LLLLAKNEEGFKNLVKLTSKSQ--ENFFRKPH 251

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +    L   G +G+I  T      + +    N  + A+       ++FG +  YV LQRH
Sbjct: 252  VNYDMLGTYG-KGIISSTSCMGSEVSQLLLKNKYEDAKYVAKALAEIFGKEDYYVELQRH 310

Query: 190  RGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             G+D  R    Q++Q+A   +L ++ T +S +  +ED   H+VL+ +     +S  DR +
Sbjct: 311  -GFDEERIVNPQLIQIARELDLKIIGTTDSHYTEKEDAYDHEVLLCIGTVKKMSDYDRMQ 369

Query: 248  VTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRFIEKECDDIQK 305
                 Y L    E+  +FSD+PEALENT+EIA +CS   L+++   +P+F      ++  
Sbjct: 370  FPGTGYHLHTSDEVEELFSDIPEALENTLEIAEKCSGLTLEMNKVYMPKF------NVPA 423

Query: 306  EEENE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               NE   L++ A  G + R  +G        ++YR+RL FEL VI  M F GYFLIV D
Sbjct: 424  PFVNEMDYLKHLAWQGFKERF-EGTEKDN---EEYRERLTFELEVIKGMGFPGYFLIVGD 479

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            F+ +AK+  I VGPGRGS  G++TAY L ITD+DP+   LLFERFLNPDR+SMPD D+DF
Sbjct: 480  FVDFAKRKGILVGPGRGSVVGALTAYCLHITDLDPIPLGLLFERFLNPDRVSMPDIDMDF 539

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              DRR+EVI YV+NKYG   V++IITFG++ A+AA++DVGR L  P S   ++ K IP  
Sbjct: 540  PDDRREEVIDYVKNKYGEHAVSRIITFGTMAARAAIKDVGRVLDYPVSMTAKIAKSIPAV 599

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A  +   F +    +  V ++++I+ KLEGL RHAS HA G+VI    +S  
Sbjct: 600  PKMTIK-KAFKESPEFLKMYETEADVKKIVDIAMKLEGLPRHASMHACGVVIAPSSISDY 658

Query: 543  VPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595
            +P      ++ +     TQFNM   E+ G++K DFLGL+T+T++ KSL  +  R ++   
Sbjct: 659  IPEILMENKETKLKERTTQFNMAECEEMGILKMDFLGLRTMTVISKSLSNVNPRRIREGK 718

Query: 596  --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI----------EDI 643
              +    IP +D   Y  +    + G+FQLES GMR  ++ +  D +          E +
Sbjct: 719  KPLHYLDIPLNDKRVYQDIAKGESYGVFQLESGGMRSFMKELFADALQTGENTMELFERL 778

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            IA VSLYRPGP+D I  Y       E I   HP +  +L+ T GVI+YQEQ M I + L+
Sbjct: 779  IAGVSLYRPGPLDYIPDYLKNMQNPENIQYDHPKLKSILEFTYGVIVYQEQCMFIVRELA 838

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
             ++  EAD +R+A  KK ++ +    E+F++G  K GIS+ +A  I+  + KF +Y FNK
Sbjct: 839  DFTKGEADNVRKAFSKKKEKMIKPLGEKFVAGCLKKGISQEVAERIWGKMRKFGEYAFNK 898

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHA AY+V+S  TAW+K +YPVEF+ A +   ++  +K+K F    ++  I+I+PP V+ 
Sbjct: 899  SHAGAYSVLSVVTAWLKFYYPVEFMTAVLNSYINKADKLKLFLSVVKKMKIEILPPDVDR 958

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-DSKKLNRRVL 882
                F V  +RI + L  IKG+G  +   I E +A+  F+  +D   R+    K+++++L
Sbjct: 959  SGQMFTVDGDRIRFGLQGIKGLGKASENVIEERAANGEFEDFQDLAERMAKHSKVDKKIL 1018

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLE 941
            E++V++G++D F  +R   L+ LD I   A   +K   +   ++F+ +E+     KI + 
Sbjct: 1019 EAMVYSGSVDSFPGTRSAKLEVLDKILASASDEKKMHNSGQMDLFSMYEEFKVYKKIVIP 1078

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                 +   + E E+   GFY S HPLD Y     + G+
Sbjct: 1079 DKKEFHKKFKLEKEKEYAGFYISEHPLDEYASYFAREGV 1117


>gi|160891291|ref|ZP_02072294.1| hypothetical protein BACUNI_03740 [Bacteroides uniformis ATCC 8492]
 gi|317481161|ref|ZP_07940236.1| DNA polymerase III [Bacteroides sp. 4_1_36]
 gi|156859512|gb|EDO52943.1| hypothetical protein BACUNI_03740 [Bacteroides uniformis ATCC 8492]
 gi|316902657|gb|EFV24536.1| DNA polymerase III [Bacteroides sp. 4_1_36]
          Length = 1265

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 377/1143 (32%), Positives = 591/1143 (51%), Gaps = 129/1143 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+           
Sbjct: 4    FVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63

Query: 61   ------KACAAGIQ-----------------------------PIIGCQLDIDMQDNLKM 85
                  K   AGI+                             PI+GC++ +  +    M
Sbjct: 64   GEIKDLKKRIAGIESGEIECEDKEAEIADCRAKMAEAESKLFKPIVGCEMYVARR---TM 120

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
              +   P  +   +++L    +GY  LI+LVS  +      +  R   S L++   EGLI
Sbjct: 121  DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGLI 178

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY---- 195
            + +    G + +    +  + AE+ +  +K LFGD  Y+ LQRH+       ++ Y    
Sbjct: 179  VCSACIGGEVPKKIINDQLEEAEEAVRWYKNLFGDDYYLELQRHKATVPRANHEAYPLQQ 238

Query: 196  -RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
               +++++LA  +++ ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   ++
Sbjct: 239  KANAKLLELARKYDIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEWM 298

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298
            K ++EM ++F D+PEAL NT+EI  +  +    HAPI+P                ++ EK
Sbjct: 299  KTKAEMNALFEDVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTEK 358

Query: 299  ECDDIQKEEENE----------------------LRNKAVAGLEVRLAQGAIAKGYH--- 333
            +  D   ++EN                        R K  A    +LA     K Y    
Sbjct: 359  DLFDEFTQDENGKVVLDEDAANAKIKRLGGYDKLYRIKLEADYLAKLAFDGAKKLYGDPL 418

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392
            + + ++RL FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS  AY L I
Sbjct: 419  SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSAVAYCLGI 478

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V  KYG E+VA IIT+G++
Sbjct: 479  TKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTM 538

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSVD 509
              K A++DV R  ++P S+ DRLCKL+P+  P   ++L  AIA     + A  + DP V 
Sbjct: 539  ATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASPDPLVR 598

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEK 565
              ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE 
Sbjct: 599  DTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIED 658

Query: 566  AGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GLIK DFLGLKTL+++++++ +    RG+++D+  I   D  TY L     T+G FQ E
Sbjct: 659  TGLIKMDFLGLKTLSIIKEAVANVRLHRGLELDIDKISISDPATYKLYCDGRTIGTFQFE 718

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+++  LK+
Sbjct: 719  SAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPIMEKYLKD 778

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FISG  KNG    
Sbjct: 779  TYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFISGGQKNGHDPK 838

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I K
Sbjct: 839  VLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLANITDITK 898

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPF 862
               + +   I  + P VN   + F V  +  I + L A+KGVG    + IME    + PF
Sbjct: 899  LMDECKAMGINTLGPDVNESNLKFTVNKEGNIRFGLGAVKGVGEGAVQSIMEEREKNGPF 958

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQW 914
              + DF  RV+    N++ LE L  AG  D F    R Q           L+ + +Y   
Sbjct: 959  KGIFDFVQRVNLTACNKKNLECLALAGGFDSFPELKREQYFAVNSKNEVFLETLVRYGNR 1018

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYK 972
             + ++     ++F  E     D  T E    E  S   R   E+ ++G Y S HPLD Y 
Sbjct: 1019 YQADQAAAANSLFGGE--NVVDIATPEIPVAERWSDLDRLNRERDLVGIYLSAHPLDEYS 1076

Query: 973  PILRKMG---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
             +L  +    +   E+  A + G  I +  +V + ++  ++ G+  G     + +   E 
Sbjct: 1077 VVLEHVCNTHMTELEDKTALV-GREITMGGIVTAVRRGISKNGNPYGIAKIEDYSGSAEL 1135

Query: 1030 NFF 1032
             FF
Sbjct: 1136 PFF 1138


>gi|328957332|ref|YP_004374718.1| DNA polymerase III subunit alpha [Carnobacterium sp. 17-4]
 gi|328673656|gb|AEB29702.1| DNA polymerase III subunit alpha [Carnobacterium sp. 17-4]
          Length = 1112

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 365/1035 (35%), Positives = 571/1035 (55%), Gaps = 60/1035 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV LQV SSYSLL+   S+  ++ K       AIA+TD N L+  ++F +      I+P
Sbjct: 2    SFVQLQVISSYSLLQSTTSIEELVVKAKERGYRAIALTDHNVLYGMVDFYKMCKKHQIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G  LD+    N + T           SI+LL   A GY+ L+ L S   LL + +   
Sbjct: 62   ILGLTLDVGGVVNNEETY----------SIILLAKNARGYESLMALSSEKMLLTENE--- 108

Query: 130  RICLSWL--QEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYV 184
                 WL  + I   ++ LI +T G  G  +     +  + A K +  ++  F   + Y+
Sbjct: 109  -----WLTIEHISQYSQNLIAITPGEKGETESFLLQDEKKSAAKVVGKWQAAFPKQQFYL 163

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             +Q H+     +++ V +LA       VA  +  ++   D  +  VL A+    V+S + 
Sbjct: 164  GIQLHQKLKVIQDA-VNELANETGTLTVALQDIRYIDAADDFSTTVLRAINKGEVLSNQQ 222

Query: 245  RPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                  ++YL   +E+  +F D  L +A + T E+A+     + +H  +LP+F   + D 
Sbjct: 223  EAE-EGEYYLPESNEVEKLFKDNGLEQAAQQTNEVAKMIDADISLHQQLLPKFPLPK-DT 280

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +  E    L+ + + GL +R+ Q         + Y +RL++EL VI +M F  YFLIV D
Sbjct: 281  VTTEF---LKEQCLKGLTLRVVQ-------PDERYTKRLEYELAVIQKMGFEDYFLIVWD 330

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             + +A K  I  G GRGS AGS+ AY L ITD+DP+ ++LLFERFLN +R +MPD D+DF
Sbjct: 331  VMAYAHKVKIVTGAGRGSAAGSLVAYLLEITDVDPIEYNLLFERFLNEERYTMPDIDLDF 390

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+E++ YV+NKYG   VAQI TFG+L AK AL+DV R   +  S+ +   K IP  
Sbjct: 391  PDNRREEILHYVKNKYGQNHVAQIATFGTLAAKMALKDVARVFGLSPSEANVWSKAIPKI 450

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                ++L+    +S      + +   ++LL + ++++EGL RH STHAAGIVI D PL+Q
Sbjct: 451  LG--ITLEKAYKESVTLRKLVEENDKNKLLFKTAKRIEGLPRHISTHAAGIVISDNPLTQ 508

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--GVKVDLS 599
             VP+ +    ++ +TQ+ M  +E+ GL+K DFLGLK LT++  +L  L QR  G ++DL 
Sbjct: 509  YVPLQKG-GGEILLTQYPMGNVEEIGLLKMDFLGLKNLTIIDNTLK-LVQRETGKRLDLL 566

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP  D ET  L      +GIFQ ES+G++  L  ++P  IEDI A+ +LYRPGP++ I 
Sbjct: 567  TIPMQDQETLQLFRQADMVGIFQFESTGIKNVLRRLEPSSIEDIAAVNALYRPGPMEQID 626

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RK G   I   H  +  +L  T GV++YQEQVMQ+A  + GY+L +AD+LRRA+GK
Sbjct: 627  TFIKRKKGVLPIEYPHESLSEILAVTYGVMVYQEQVMQVAAKMGGYTLGQADILRRAIGK 686

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K  +DK++  FISGA++ G +K +A+ +++ + +FA+YGFN+SHA AY+ I+YQ A++
Sbjct: 687  KQKSIIDKERHHFISGANQLGYTKEVAMQVYDYIERFANYGFNRSHAVAYSFIAYQMAYL 746

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYP  F  A +   +++  K+K++  +A++  I+++PP++NT    F + +N I +  
Sbjct: 747  KAHYPNAFFVALLNSALNSSAKMKEYIIEAKKRKIKVIPPNINTSFSGFTLTENNILFGF 806

Query: 840  AAIKGV-GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             +IKG+        I    +D  +  L DF  R+D K L    ++ L++AGA D F YSR
Sbjct: 807  NSIKGLRRDMIVEMIQNRKSDGKYLGLIDFLKRLDKKWLKPEYIKPLIYAGAFDQFDYSR 866

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              LL S+D I    Q ++ +  N   ++F   K  +     L       +  ++      
Sbjct: 867  GALLASVDGI---VQSIKMSGNNI--DLFELLKPKYEFAPDLTLEEKLETEEQY------ 915

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG Y SGHP + Y   LR+   K  E +     G   R+  MV +  + +T+KG  + +V
Sbjct: 916  LGTYLSGHPTEKYDQ-LRQW--KQVEYTSELTIGKTSRIIGMVKNVHKIRTKKGESMAFV 972

Query: 1019 TFSEPAKEYEANFFP 1033
            T S+ + +     FP
Sbjct: 973  TISDTSGDCSLTLFP 987


>gi|294628828|ref|ZP_06707388.1| DNA polymerase III, alpha subunit [Streptomyces sp. e14]
 gi|292832161|gb|EFF90510.1| DNA polymerase III, alpha subunit [Streptomyces sp. e14]
          Length = 1179

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 360/1075 (33%), Positives = 569/1075 (52%), Gaps = 70/1075 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VH+ YSLL+GA  L ++ D         IA++D  NL  A +F   A  AG+ 
Sbjct: 4    PPFTHLHVHTQYSLLDGAARLKDMFDACNEMGMTHIAMSDHGNLHGAYDFFHTAQKAGVT 63

Query: 69   PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVS 117
            PIIG +  +  + + N +    G+ P      +          +    + G   L  L S
Sbjct: 64   PIIGIEAYVAPESRRNKRKIQWGQ-PHQKRDDVSGSGGYTHKTMWAVNSTGLHNLFRLSS 122

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              Y     ++  R+    + +  +EG++  TG  SG +           A K    ++ +
Sbjct: 123  DAYAEGWLQKWPRMDKETIAQW-SEGIVASTGCPSGEVQTRLRLGQFDEALKSAADYQDI 181

Query: 178  FG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            FG DR ++ L  H G D   R R+  ++++     +P + TN+S +    +  AHD L+ 
Sbjct: 182  FGKDRYFLELMDH-GIDIEHRVRDG-LLEIGKKLGIPPLVTNDSHYTYAHEATAHDALLC 239

Query: 234  VAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFI-LQVHA 289
            +     +S  DR +     +YLK+  EM +I S     E   NT+ +A       + V  
Sbjct: 240  IQTGKNLSDPDRFKFDGTGYYLKSTDEMYAIDSSDAWQEGCANTLLVAEMVDTTGMFVKR 299

Query: 290  PILPRFIEKECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
             ++P+F      DI +   E    + +   G+E R   G        +D ++++++E++V
Sbjct: 300  DLMPKF------DIPEGYTEVTWFKEEVRRGMERRFPGGI------PEDRQKQVEYEMDV 347

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DP+   L+FERF
Sbjct: 348  IIQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYALGITDLDPIPHGLIFERF 407

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  
Sbjct: 408  LNPERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGY 467

Query: 468  PYSQVDRLCKLIPND-------------PAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            PY+  DR+ K +P D             P+HP   +A       R     +P V ++++ 
Sbjct: 468  PYAMGDRITKAMPADVLGKGIDLDGITNPSHPRYSEA----GEVRAMYENEPDVKKVIDT 523

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++ +EGL R    HAAG+++    +++ VP++      + +TQ++    E  GL+K DFL
Sbjct: 524  AKGVEGLVRQMGVHAAGVIMSSETITEHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFL 583

Query: 575  GLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT++  ++  + + +G+ +DL  +P DD  T+ LL    TLG+FQ +   MR  L 
Sbjct: 584  GLRNLTIMDDAVKMVKSNKGIDIDLLALPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLR 643

Query: 634  GMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQG 687
             M+PD  EDI A+ +LYRPGP  +D+   Y  RKNG ++I  IHP ++  LKE    T G
Sbjct: 644  LMKPDNFEDISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHPELEAPLKEVLDVTYG 703

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQV + AQ+++GYSL EAD+LRR MGKK  +E+ K    F +GA KNG S     
Sbjct: 704  LIVYQEQVQKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFTIFQAGAKKNGYSDEAIQ 763

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++++L  FA Y FNK+H+AAY ++SY TA++K ++P E++AA +T   D+ +K   +  
Sbjct: 764  ALWDVLVPFAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLN 823

Query: 808  DARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSL 865
            + R+  I+++PP+VN    +F   GD+ I + L+A++ VGT     I+    A   + S 
Sbjct: 824  ECRRMGIKVLPPNVNESESNFAAQGDDVILFGLSAVRNVGTNVVESIIRTRKAKGKYSSF 883

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             D+  +V++   N+R  ESL+ AGA D  G++R  L    + +      V++       +
Sbjct: 884  PDYLDKVEAVVCNKRTTESLIKAGAFDTMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFD 943

Query: 926  IFA--HEKGTFSDKITLE-KFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
            +F    E+ +      L+ +FS +  + +     E+ +LG Y S HPL   + +L     
Sbjct: 944  LFGGMGEETSSEPGFGLDVEFSPDEWDKTYLLAQEREMLGLYVSDHPLFGLENVLADKAD 1003

Query: 981  KGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G  +        G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1004 AGISQLTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|160885119|ref|ZP_02066122.1| hypothetical protein BACOVA_03117 [Bacteroides ovatus ATCC 8483]
 gi|156109469|gb|EDO11214.1| hypothetical protein BACOVA_03117 [Bacteroides ovatus ATCC 8483]
          Length = 1268

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 378/1146 (32%), Positives = 595/1146 (51%), Gaps = 134/1146 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+           
Sbjct: 4    FVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63

Query: 61   ---------------------------KACAAGI--------QPIIGCQLDIDMQD-NLK 84
                                        AC A I        +PIIGC++ +  +  +LK
Sbjct: 64   GEVKDLKKRIAGIEAGTIECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVARRTMDLK 123

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
               +GK P  +   +++L     GY  LI+LVS  +      +  R   S L++   EGL
Sbjct: 124  ---EGK-PDQSGYHLIVLAKNETGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR-- 196
            I+ +    G + +         AE+ +  +K LFGD  Y+ LQRH+       ++ Y   
Sbjct: 178  IICSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLELQRHKATVPRANHECYPLQ 237

Query: 197  ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A    + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKHLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P                +F E
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357

Query: 298  KECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH-- 333
            K+  D          +  EE+ + + K + G +             +LA     + Y   
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
              ++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRLCKL+P+  P   ++L  AIA     + A  + DP +
Sbjct: 538  MATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASSDPLL 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R V+VD+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDISDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPIMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861
            K   + +   IQ + P VN   + F V  D  I + L A+KGVG    + IME    + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGDIRFGLGAVKGVGEAAVQSIMEERRKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEK----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
              + ++     ++F  E      T      +E++S  +   R   E+ ++G Y S HPLD
Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLD---RLNRERDLVGIYLSAHPLD 1074

Query: 970  VYKPILRKMG---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
             +  +L  +    +   E+  A + G  I +  +V S ++  ++ G+  G     + +  
Sbjct: 1075 EFSIVLEHVCNTRMADLEDKAALV-GREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGS 1133

Query: 1027 YEANFF 1032
             E  F+
Sbjct: 1134 TEIPFW 1139


>gi|257784701|ref|YP_003179918.1| DNA polymerase III, alpha subunit [Atopobium parvulum DSM 20469]
 gi|257473208|gb|ACV51327.1| DNA polymerase III, alpha subunit [Atopobium parvulum DSM 20469]
          Length = 1278

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 349/1030 (33%), Positives = 545/1030 (52%), Gaps = 75/1030 (7%)

Query: 67   IQPIIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            I+PI GC+    + D + K T Q +        ++LL     GY  L++++S     +  
Sbjct: 125  IKPIFGCEAYFILDDCIEKGTKQVRY------HLILLAKNETGYVNLMKMMSEAGSKEMF 178

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R  L  L+    EG+I  +   SG I R  F    + AE+    ++ +FGD  Y+ 
Sbjct: 179  YYKPRTTLEMLKRY-HEGIICTSACVSGIIPRMLFEGRPEEAERWAKIYQDIFGDDFYLE 237

Query: 186  LQRHR-------GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            +Q H        GY DR    ++V++ +   + +VATN++ +L++ED    D+   +   
Sbjct: 238  IQDHGLSDPSWGGYTDRTLAERIVKMGHDLGIKVVATNDNHYLTKEDASVQDIASCIGSG 297

Query: 238  TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V  ++R R+T  + YLK+  EM  IFS  PEA+ENT+E+A +C++ L      LP+F 
Sbjct: 298  ARVDDENRKRMTGSEFYLKSEQEMRQIFSWCPEAIENTIEVANKCNYELDWTHMYLPKF- 356

Query: 297  EKECDDIQKEEENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                 D+ + E +E   R +   GL  R          +  + + R ++E ++I +  F+
Sbjct: 357  ----PDLAEGETSEERFRKECELGLARRYGDDWQNVVINEINVKDRFEYEYDIICKKGFA 412

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFLIV ++++WAK+N I VGPGRGS AG++ AYA+ IT  DPL   L+FERFL+P R  
Sbjct: 413  DYFLIVQEYVRWAKENGIGVGPGRGSAAGAIVAYAMDITSFDPLENGLMFERFLSPQRSE 472

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD D+DF  +RR EV+ +V+  YG ERV+ +IT+ +++AK A+ D  R L  P     R
Sbjct: 473  MPDIDMDFDDERRLEVVEHVRQIYGSERVSHVITYSTIKAKQAINDACRVLGYPVYMGQR 532

Query: 475  LCKLIPNDPAHPVSL--------QAIAD--DSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L K+IP DP   +          Q  AD   + F EA   DP   R+++ +  +EGL+R 
Sbjct: 533  LSKMIPGDPNAHLKFVLHKAQEGQKGADQYSADFEEAYENDPDARRIIDAALSIEGLHRG 592

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HA  ++I   P++  VP   D +  + +TQ+    +   GL+K DFLGL+TLT++ +
Sbjct: 593  EGVHACAVLIAPTPVNDHVPTKVDTKGGVEITQYEGHSVADMGLLKMDFLGLRTLTVISR 652

Query: 585  SLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++  +    G+ +D+  IPF D E Y LL    T G+FQ+ES+GM   ++GM+P   + I
Sbjct: 653  AIKNVKDSYGIDIDVDSIPFTDPEIYRLLREGRTAGVFQVESAGMTATIKGMRPTEYKHI 712

Query: 644  IALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +AL++LYRPGP++  +V  Y NR NG+E++    P +  +L+ET G ++YQEQVMQI+  
Sbjct: 713  VALIALYRPGPLNAGMVTSYINRMNGREEVKDYDPRLHDILEETYGTMVYQEQVMQISMK 772

Query: 702  LSGYSLSEADVLR--------RAMGKKIKEEMDKQKE----RFISGASKNGISKTIAVNI 749
            +SG++  E+D +R        + M + ++   D   E     + +GA +NG  +++A +I
Sbjct: 773  MSGFTAGESDKVRKAVAKKKIKLMQEVVQHWDDGTDETMEAHWKNGAVRNGFDRSVAESI 832

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++ + +FA Y FNKSH+A YA++  QTAW+K HYP EF+AA +T  M   +KI  +    
Sbjct: 833  WDDVLEFASYAFNKSHSAGYAILVMQTAWIKAHYPHEFMAAVLTSYMGKTDKIVHYVSAC 892

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDF 868
            R   I+I+PP +N    DF      I +  A I+GVG      IM E     PF ++ DF
Sbjct: 893  RHEGIKILPPDINESGKDFTATKEGIRFGFAGIRGVGAGVGEAIMLERQKGGPFANIHDF 952

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD--NIQKYAQWVEKNRTNKHE-- 924
              R+D+ +  R V+E+L+ AGA D  GY+RMQ++  +D  N Q       K + +K    
Sbjct: 953  VDRMDASQAKRNVVEALIKAGAFDSTGYTRMQMMSFVDKNNPQNIIDAATKRQKDKAVGQ 1012

Query: 925  ----NIFAHEKGTFSDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYKPIL---R 976
                ++FA  +G+    I  E   VE +   +   E  VLG Y S HPL  Y+  L   R
Sbjct: 1013 FSMFDMFAEVEGSGFSDIVPEPDGVEWDRRFKLTKEYEVLGIYVSDHPLRPYEYALAKSR 1072

Query: 977  KMGIKGYEESV-------------ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
               +   EE+V                 G  IR A MV +  ++ T+ G  +  VT  + 
Sbjct: 1073 DYALAEIEENVEVQLPNGAMSQQFKVPEGKPIRFAGMVTNVMKRTTKNGDPMAIVTLEDM 1132

Query: 1024 AKEYEANFFP 1033
                    FP
Sbjct: 1133 EGSVTIVMFP 1142



 Score = 41.6 bits (96), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          +FVHL  HS +S+L+GA  + +++ K      PA+A+TD   LF   +F
Sbjct: 2  AFVHLHNHSDFSILDGASRVPDMVSKAVEFGMPALALTDHGYLFGIPDF 50


>gi|260174216|ref|ZP_05760628.1| DNA polymerase III alpha subunit [Bacteroides sp. D2]
 gi|315922485|ref|ZP_07918725.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696360|gb|EFS33195.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1268

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 377/1146 (32%), Positives = 595/1146 (51%), Gaps = 134/1146 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+           
Sbjct: 4    FVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63

Query: 61   ---------------------------KACAAGI--------QPIIGCQLDIDMQD-NLK 84
                                        AC A I        +PIIGC++ +  +  +LK
Sbjct: 64   GEVKDLKKRIAGIEAGTIECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVARRTMDLK 123

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
               +GK P  +   +++L     GY  LI+LVS  +      +  R   S L++   EGL
Sbjct: 124  ---EGK-PDQSGYHLIVLAKNETGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR-- 196
            I+ +    G + +         AE+ +  +K LFGD  Y+ LQRH+       ++ Y   
Sbjct: 178  IICSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLELQRHKATVPRANHECYPLQ 237

Query: 197  ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A    + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKHLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P                +F E
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357

Query: 298  KECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH-- 333
            K+  D          +  EE+ + + K + G +             +LA     + Y   
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
              ++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRLCKL+P+  P   ++L  AIA     + A  + DP +
Sbjct: 538  MATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASSDPLL 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R ++VD+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRNIEVDVDAIDISDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861
            K   + +   IQ + P VN   + F V  D  I + L A+KGVG    + IME    + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGDIRFGLGAVKGVGEAAVQSIMEERRQNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEK----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
              + ++     ++F  E      T      +E++S  +   R   E+ ++G Y S HPLD
Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLD---RLNRERDLVGIYLSAHPLD 1074

Query: 970  VYKPILRKMG---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
             +  +L  +    +   E+  A + G  I +  +V S ++  ++ G+  G     + +  
Sbjct: 1075 EFSIVLEHVCNTRMADLEDKAALV-GREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGS 1133

Query: 1027 YEANFF 1032
             E  F+
Sbjct: 1134 TEIPFW 1139


>gi|218129192|ref|ZP_03457996.1| hypothetical protein BACEGG_00767 [Bacteroides eggerthii DSM 20697]
 gi|217988570|gb|EEC54890.1| hypothetical protein BACEGG_00767 [Bacteroides eggerthii DSM 20697]
          Length = 1265

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 375/1142 (32%), Positives = 592/1142 (51%), Gaps = 127/1142 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+           
Sbjct: 4    FVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNGGPK 63

Query: 61   ------KACAAGIQ-----------------------------PIIGCQLDIDMQDNLKM 85
                  K   AGI+                             PIIGC++ +  +    M
Sbjct: 64   GEIKDLKKRIAGIESGEIACEDKEAEIAACKEKIAEAENKLFKPIIGCEMYVARR---TM 120

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
              +   P  +   +++L    +GY  LI+LVSR + +    +  R   + L++   EGLI
Sbjct: 121  DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTMGYYMRP-RTDRNELEKY-HEGLI 178

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY---- 195
            + +    G I +    +    AE+ +  +K LFGD  Y+ LQRH+       ++ Y    
Sbjct: 179  VCSACIGGEIPKKIINDQLDEAEEAVRWYKNLFGDDFYLELQRHKATVPRANHEAYPLQQ 238

Query: 196  -RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
               +++++ A  + + ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   ++
Sbjct: 239  KANAKLLEYAKKYGIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEWM 298

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298
            K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P                ++ EK
Sbjct: 299  KTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRKKYTEK 358

Query: 299  ECDDIQKEEEN----------ELRNKAVAGLE------------VRLAQGAIAKGYH--- 333
            +  D   ++EN          + + K + G +             +LA     + Y    
Sbjct: 359  DLFDEFTQDENGNVVLDEDAAKAKIKRLGGYDKLYRIKLEADYLAKLAFDGAKRLYGDPL 418

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392
            + + ++RL FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS  AY L I
Sbjct: 419  SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSAVAYCLGI 478

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V  KYG E+VA IIT+G++
Sbjct: 479  TKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTM 538

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSVD 509
              K A++DV R  ++P S+ DRL KL+P+  P   ++L  AIA     + A  + DP V 
Sbjct: 539  ATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQVAEASPDPLVR 598

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEK 565
              L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE 
Sbjct: 599  DTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIED 658

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GLIK DFLGLKTL++++++++ +   RGVK+D+  I   D  TY L     T+G FQ E
Sbjct: 659  TGLIKMDFLGLKTLSIIKEAVENVRLHRGVKLDIDKISIKDPATYKLYCDGRTIGTFQFE 718

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+++  LK+
Sbjct: 719  SAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPIMEKYLKD 778

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI+G  KNG    
Sbjct: 779  TYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQKNGHDPK 838

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + ++  I K
Sbjct: 839  VLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLSDITTITK 898

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPF 862
               + +   I+++ P VN   + F V  +  I + L A+KGVG      IME    + P+
Sbjct: 899  LMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVHSIMEEREKNGPY 958

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQW 914
              + DF  RV+    N++ LE L  AG  D F    R Q           ++ + +Y   
Sbjct: 959  TGIFDFVQRVNLNSCNKKNLECLALAGGFDSFPELKREQYFAVNAKNEVFIETLVRYGNR 1018

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYK 972
             + ++     ++F  E     D  T E    E  S   R   E+ ++G Y S HPLD Y 
Sbjct: 1019 YQADKAAAVNSLFGGE--NVVDIATPEILPAERWSDLDRLNRERDLVGIYLSAHPLDEYS 1076

Query: 973  PILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +        E  A + G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1077 VVLEHVCNTHMAELEDKAALVGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAELP 1136

Query: 1031 FF 1032
            FF
Sbjct: 1137 FF 1138


>gi|154488936|ref|ZP_02029785.1| hypothetical protein BIFADO_02245 [Bifidobacterium adolescentis
            L2-32]
 gi|154083073|gb|EDN82118.1| hypothetical protein BIFADO_02245 [Bifidobacterium adolescentis
            L2-32]
          Length = 1196

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 355/1085 (32%), Positives = 571/1085 (52%), Gaps = 70/1085 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S +FV L  H+ YSLL+GA  + +++ +      PA+ ITD  N+  A E    A  
Sbjct: 1    MATSANFVQLHNHTHYSLLDGASKIPDLVKRAKELGMPAVGITDHGNMHGAYEMWSAAVN 60

Query: 65   AGIQPIIGCQ----------------LDIDMQDNLKMTNQGKTP-----FPTVPSIVLLV 103
            AGI+PIIG +                 D +   +L   ++ + P        +  + +  
Sbjct: 61   AGIKPIIGIEAYVTPETARQDPTRVSWDTNWNPDLDPLHRRRNPDDVSGGGVITHLTMWA 120

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
               EG   L++  +   L  +  +  R+    L +  ++G+I  +G  SG I        
Sbjct: 121  ENDEGLVNLMKASTDANLEGRVMRYPRMDKEILAKY-SKGIIASSGCPSGIIQTRLRLGQ 179

Query: 164  SQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLS 221
               A +    F+ +FG D  Y+    H    ++     ++ +A     PL+ATN+S +  
Sbjct: 180  FDDALRAAGEFQDIFGRDNFYIEFMDHGLKIEKQVTDGLLDIAKKLNAPLLATNDSHYTR 239

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
             ED  A D ++ +   + + +  R +     +Y+K+  EM  +F DLPEA +NT+EIA R
Sbjct: 240  AEDAGAQDAMLCINSGSTLDEPGRFKFDGTGYYIKSAEEMRELFKDLPEACDNTLEIAER 299

Query: 281  CSFILQVH--APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
            C+ +   H     +P+F   +C +   E    L+ K   GLE R        G  + +  
Sbjct: 300  CNVMFDDHEDGAFMPQF---DCPEGWDETSLFLK-KVEEGLERRY------NGKPSLEVL 349

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            ++ D+E  VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DPL
Sbjct: 350  RQADYECGVICQMQFCGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPL 409

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               L+FERFLNP+R+S+PD D+DF  D R  V+ YV  KYG ++VAQ + +G+++ K AL
Sbjct: 410  EHGLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQAL 469

Query: 459  RDVGRALQMPYSQVDRLCKLIP-------NDPAHPV---SLQAIADDSRFREARLADPSV 508
            +D  R +   +S  D++ K +P       + P H +   S +  A+   FRE   +DP  
Sbjct: 470  KDSARIMGYDFSVGDKITKALPPAQTGGKDIPLHDIFDPSAKRYAEAREFRELYDSDPDA 529

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAG 567
             R+ + +  +EGL R    HA   ++G  P++   P+    R+D  V T       E  G
Sbjct: 530  KRITDEAMGIEGLIRQTGVHACATIMGSEPITNTSPLLE--RTDGTVTTTLEYHTCETLG 587

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGL  LT+++ +L+ +   G  ++D + IP DD  TY LL+   TLG+FQL+S 
Sbjct: 588  LVKMDFLGLSNLTVIRDTLNNIEANGKERIDHTKIPLDDRPTYDLLSRGDTLGVFQLDSD 647

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLI-DPM-- 681
            GMR  L+ ++P+   DI AL++LYRPGP  +D+   Y  RKNG +KI  IHP + +P+  
Sbjct: 648  GMRSLLKTLKPNNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKE 707

Query: 682  -LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
             L ET G+I+YQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G
Sbjct: 708  VLDETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHG 767

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             S+  A  ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +
Sbjct: 768  YSEEAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKD 827

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM--EASA 858
            K   +  +AR+  IQ++ P VN    ++    + + + L AI+ VG      I+    + 
Sbjct: 828  KTALYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGKNAVDAIIAERENG 887

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
               + +  DF  RV  + LNRR++ESL+ AGA D    +R  L    +        +++ 
Sbjct: 888  HGKYVNFTDFIKRVPLEALNRRLVESLIKAGAFDSIDPNRRALFTIHETAINSVVGLKRK 947

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVE-------NSSVRFENEQRVLGFYFSGHPLDVY 971
            +     ++FA    +  +   +    V+       +   +   E+ +LG Y S HPL   
Sbjct: 948  QAEGQFDLFADLDDSKENDSAMGDAMVQVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGM 1007

Query: 972  KPI---LRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            + I   LR+M I    +   ++  G  + +A ++ +  ++ ++KG+    VT  +     
Sbjct: 1008 QSILVSLREMSIAHLIDRAGSMPDGQQVTIAGLITNVDRRVSKKGNPWAIVTVEDLESSI 1067

Query: 1028 EANFF 1032
            +  FF
Sbjct: 1068 QCMFF 1072


>gi|329957519|ref|ZP_08297994.1| DNA polymerase III, alpha subunit [Bacteroides clarus YIT 12056]
 gi|328522396|gb|EGF49505.1| DNA polymerase III, alpha subunit [Bacteroides clarus YIT 12056]
          Length = 1265

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 371/1142 (32%), Positives = 591/1142 (51%), Gaps = 127/1142 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+           
Sbjct: 4    FVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNGGPK 63

Query: 61   ---------------------------KACAAGI--------QPIIGCQLDIDMQDNLKM 85
                                        AC A I        +PIIGC++ +  +    M
Sbjct: 64   GEIKDLKKRIAGIESGEIACEDKEAEIAACKAKITEAENKLFKPIIGCEMYVARR---TM 120

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
              +   P  +   +++L     GY  LI+LVSR + +    +  R   + L++   EGLI
Sbjct: 121  DKKEGKPDQSGYHLIVLAKNETGYHNLIKLVSRAWTMGYYMRP-RTDRNELEKY-HEGLI 178

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY---- 195
            + +    G + +    +  + AE+ +  +K LFGD  Y+ LQRH+       ++ Y    
Sbjct: 179  VCSACIGGEVPKKIINDQLEEAEEAIRWYKNLFGDDYYLELQRHKATVPRANHEAYPLQQ 238

Query: 196  -RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
               +++++ A  + + ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   ++
Sbjct: 239  KANAKLLEYARKYNIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEWM 298

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298
            K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P                ++ EK
Sbjct: 299  KTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTEK 358

Query: 299  ECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH--- 333
            +  D          +  EE  + + K + G E             +LA     + Y    
Sbjct: 359  DLFDEFTQDENGKVVLDEEAAKAKIKRLGGYEKLYRIKLEADYLAKLAFDGAKRIYGDPL 418

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392
            + + ++RL FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS  AY L I
Sbjct: 419  SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSAVAYCLGI 478

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V  KYG E+VA IIT+G++
Sbjct: 479  TKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTM 538

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSVD 509
              K A++DV R  ++P S+ DRL KL+P+  P   ++L  AIA     + A  + DP V 
Sbjct: 539  ATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEASPDPLVR 598

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEK 565
              L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE 
Sbjct: 599  DTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIED 658

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GLIK DFLGLKTL++++++++ +   RG+ +D+  I  +D  TY L     T+G FQ E
Sbjct: 659  TGLIKMDFLGLKTLSIIKEAVENVRLHRGLALDIDKISINDPATYKLYCDGRTIGTFQFE 718

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+++  LK+
Sbjct: 719  SAGMQKYLRELQPGTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPIMEKYLKD 778

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI+G  KNG    
Sbjct: 779  TYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQKNGHDAK 838

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + ++  I K
Sbjct: 839  VLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLSDITTITK 898

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPF 862
               + +   I+++ P VN   + F V  +  I + L A+KGVG    + IME    + P+
Sbjct: 899  LMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVQSIMEEREKNGPY 958

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQW 914
              + DF  RV+    N++ LE L  AG  D F    R Q           ++ + +Y   
Sbjct: 959  TGIFDFVQRVNLNACNKKNLECLALAGGFDSFPELKREQYFAVNAKNEVFIETLVRYGNR 1018

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYK 972
             + ++     ++F  E     D  T E    E  S   R   E+ ++G Y S HPLD Y 
Sbjct: 1019 YQADKAAAVNSLFGGE--NVVDIATPEILPAERWSDLDRLNKERDLVGIYLSAHPLDEYS 1076

Query: 973  PILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +        E    + G  I +  +V + ++  ++ G+  G     + +   E  
Sbjct: 1077 VVLEHVCNTHMAELEDKTLLVGREITMGGIVTTVRRGISKNGNPYGIAKIEDYSGSAELP 1136

Query: 1031 FF 1032
            FF
Sbjct: 1137 FF 1138


>gi|238063859|ref|ZP_04608568.1| DNA polymerase III, alpha subunit [Micromonospora sp. ATCC 39149]
 gi|237885670|gb|EEP74498.1| DNA polymerase III, alpha subunit [Micromonospora sp. ATCC 39149]
          Length = 1179

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 372/1078 (34%), Positives = 563/1078 (52%), Gaps = 76/1078 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILD-KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            SF HL VH+ YS+L+G    +     +      PA+A+TD  N+  A +F ++A AAGI 
Sbjct: 4    SFAHLHVHTEYSMLDGCGPGSRTSSPRPTGSGMPAVAMTDHGNMHGANDFYKQAMAAGIT 63

Query: 69   PIIGCQLDI---------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
            PI+G +  +                 Q +  ++  G      +  + +  +   G   L 
Sbjct: 64   PILGVEAYVAPESRYHKARVKWGRPEQKSDDVSGNG-----AITHMTMWAANKTGLHNLF 118

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L SR  +     +  R+ +  + E   EG++  TG  SG +           A K    
Sbjct: 119  TLNSRASMEGHYVKWPRMDMELIAE-HAEGIMATTGCPSGAVQTRLRLGQFDEALKVASA 177

Query: 174  FKKLFG-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++ +FG D  ++ L  H G D  R     + ++     +P V TN+S +  E   EAHDV
Sbjct: 178  YQDIFGRDNYFLELMDH-GLDIERRVRDGLTEIGKKLGIPPVVTNDSHYTHEAQAEAHDV 236

Query: 231  LMAVAHSTVVSQKDRPRVTPDHY-LKNRSEMVSIFSD--LPEALENTVEIARRC--SFIL 285
            L+ V   + ++  +R R     Y +K+  +M ++ S     E   NT+ +A +   + + 
Sbjct: 237  LLCVQTGSNIADPNRFRFEGGGYFIKSAEQMRAVDSSQLWLEGCRNTLLVAEKVDPAGMF 296

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            + H  ++PRF   E +     EE+  R +   GL  R   G + +G+  Q      ++EL
Sbjct: 297  EFHN-LMPRFPVPEGE----TEESWFRKETFKGLARRFP-GGVPEGHVVQ-----AEYEL 345

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VI +M F  YFL+VADFI WAK   I VGPGRGS AGS+ AYAL ITD+DP+   L+FE
Sbjct: 346  GVIIQMGFPSYFLVVADFIGWAKSQGIAVGPGRGSAAGSLVAYALGITDLDPIPHGLIFE 405

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+SMPD DIDF + RR EVI+YV +K+G ++VAQI TFG+++AKAA++D  R L
Sbjct: 406  RFLNPERVSMPDVDIDFDERRRGEVIKYVTDKWGEDKVAQIATFGTIKAKAAIKDSARVL 465

Query: 466  QMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLL 512
              PY+  DR+ K +P              DP HP   +A       R    +DP V +++
Sbjct: 466  GYPYAVGDRITKAMPPAVMGKDIPLSGIFDPKHPRYAEA----GEIRGLYESDPDVKKVI 521

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            + ++ +EGL R    HAAG+++   P+ + +P+ R     + +TQF+    E  GL+K D
Sbjct: 522  DTAKGIEGLIRQTGVHAAGVIMSAEPIIEHIPLMRRDSDGVIITQFDYPTCESLGLLKMD 581

Query: 573  FLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGL+ LT++  ++ +     G  +DL  +  DD   Y LL    TLG+FQL+   MR  
Sbjct: 582  FLGLRNLTIIDDAVKNIQLNHGKDLDLLGLDLDDKAAYELLARGDTLGVFQLDGGPMRSL 641

Query: 632  LEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----T 685
            L  M+PD  EDI A+++LYRPGP  +D+   Y  RKNG ++I  IHP ++  L+E    T
Sbjct: 642  LRLMKPDNFEDISAVLALYRPGPMGVDSHTNYALRKNGLQEITPIHPELEEPLREILAPT 701

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+I+YQEQV + AQ+L+GY+L +AD+LRRAMGKK KE +DK+   F  G  + G S   
Sbjct: 702  HGLIVYQEQVQRAAQILAGYTLGQADLLRRAMGKKKKEILDKEFVPFRDGCRERGYSDEA 761

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               ++++L  FA Y FNK+H+AAY ++SY TA++K HYP E++AA +T   D+ +K+  +
Sbjct: 762  IQAVWDVLVPFAGYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKMALY 821

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDS 864
              + R+  IQ++PP VNT    F      I + LAAI+ VG      IM    DK  +  
Sbjct: 822  LSECRRMGIQVLPPDVNTSAGPFTPVGKDIRFGLAAIRNVGANVVASIMRCRQDKGEYAD 881

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ-SLDNIQKYAQWVEKNRTNKH 923
              DF ++VD+   N++ +ESL+ AGA D  G++R  LL    D I  YA    K    ++
Sbjct: 882  FYDFLAKVDAVVCNKKTIESLIKAGAFDVMGHTRKGLLAVHADAIDAYADVKRKEAVGQY 941

Query: 924  ENIFAH----EKGTFSDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
            +   A     E    S  +       E +   +   E+ +LG Y S HPL   + +L   
Sbjct: 942  DLFGAGFGDAEAAGGSTTVMPTIGEAEWDKRDKLAFEREMLGLYVSDHPLFGLEHVLGAA 1001

Query: 979  G---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                I    E      G  + LA ++   Q++ T++G      T  + A   E  FFP
Sbjct: 1002 ADTTIAALSEEGTVPDGAVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1059


>gi|329940921|ref|ZP_08290201.1| DNA polymerase III subunit alpha [Streptomyces griseoaurantiacus
            M045]
 gi|329300215|gb|EGG44113.1| DNA polymerase III subunit alpha [Streptomyces griseoaurantiacus
            M045]
          Length = 1179

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 363/1069 (33%), Positives = 570/1069 (53%), Gaps = 62/1069 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YS+L+GA  L ++ D         IA++D  NL  A +F   A  AG+ PI
Sbjct: 6    FTHLHVHTQYSMLDGAARLKDMFDACNEMGMTHIAMSDHGNLHGAYDFFHSAKKAGVTPI 65

Query: 71   IGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSRM 119
            IG +  +  + + N +    G+ P      +          +  + A G   L  L S  
Sbjct: 66   IGIEAYVAPESRRNKRKIRWGQ-PHQKRDDVSGSGGYTHKTIWAADAGGLHNLFRLSSDA 124

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            Y     ++  R+    + +  +EGLI  TG  SG +           A K    ++ +FG
Sbjct: 125  YAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGELQTRLRLGQFDEALKSAADYQDIFG 183

Query: 180  -DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             DR ++ L  H G D   R RE  ++++     +P + TN+S +    +  AHD L+ + 
Sbjct: 184  KDRYFLELMDH-GIDIEHRVREG-LLEIGKKLGIPPLVTNDSHYTYAHEASAHDALLCIQ 241

Query: 236  HSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHA-PI 291
                +S  DR +     +YLK+  EM +I S     E   NT+ +A +           +
Sbjct: 242  TGKNLSDPDRFKFDGTGYYLKSADEMYAIDSSDAWQEGCRNTLLVAEQIDTTGMFEKRDL 301

Query: 292  LPRFIEKECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
            +P+F      DI +   E    + +   G+E R   G        +D ++++++E++VI 
Sbjct: 302  MPKF------DIPEGYTEVTWFKEEVRRGMERRFPGGI------PEDRQKQVEYEMDVII 349

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLN
Sbjct: 350  QMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLN 409

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY
Sbjct: 410  PERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPY 469

Query: 470  SQVDRLCKLIPNDP-AHPVSLQAIADDS--RFREARLA------DPSVDRLLEISQKLEG 520
            +  DR+ K +P D     + L  I D +  R+ EA         +P V ++++ ++ +EG
Sbjct: 470  AMGDRITKAMPADVLGKGIDLNGITDPTHPRYSEAGEVRGMYENEPDVKKVIDTAKGVEG 529

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R    HAAG+++    +++ VP++      + +TQ++    E  GL+K DFLGL+ LT
Sbjct: 530  LVRQMGVHAAGVIMSSETITEHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNLT 589

Query: 581  LLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  ++  + + +G  +DL  +P DD  T+ LL    TLG+FQ +   MR  L  M+PD 
Sbjct: 590  IMDDAVKMVKSNKGRDIDLLSLPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDN 649

Query: 640  IEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQE 693
             EDI A+ +LYRPGP  +D+   Y  RKNG ++I  IHP ++  LKE    T G+I+YQE
Sbjct: 650  FEDISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHPELEAPLKEVLDVTYGLIVYQE 709

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QV + AQ+++GYSL EAD+LRR MGKK  +E+ K    F +GA KNG S      ++++L
Sbjct: 710  QVQKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFTIFQAGAKKNGYSDEAIQALWDVL 769

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNK+H+AAY ++SY TA++K +YP E++AA +T   D+ +K   +  + R+  
Sbjct: 770  VPFAGYAFNKAHSAAYGLVSYWTAFLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMG 829

Query: 814  IQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871
            I+++PP+VN    +F   GD+ I + L+A++ VGT     I+ +  A   + S  D+  +
Sbjct: 830  IKVLPPNVNESESNFAAQGDDVILFGLSAVRNVGTNVVDSIIRSRKAKGKYASFPDYLDK 889

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--H 929
            V++   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F    
Sbjct: 890  VEAVVCNKRTTESLIKAGAFDSMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMG 949

Query: 930  EKGTFSDKITLE-KFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            E  T      L+ +FS +  + +     E+ +LG Y S HPL   + +L      G  + 
Sbjct: 950  EGDTSEPGFGLDVEFSPDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQL 1009

Query: 987  VATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G+   + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1010 TGGDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFP 1058


>gi|119026148|ref|YP_909993.1| DNA polymerase III subunit alpha [Bifidobacterium adolescentis ATCC
            15703]
 gi|118765732|dbj|BAF39911.1| DNA polymerase III alpha subunit [Bifidobacterium adolescentis ATCC
            15703]
          Length = 1196

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 355/1085 (32%), Positives = 571/1085 (52%), Gaps = 70/1085 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S +FV L  H+ YSLL+GA  + +++ +      PA+ ITD  N+  A E    A  
Sbjct: 1    MATSANFVQLHNHTHYSLLDGASKIPDLVKRAKELGMPAVGITDHGNMHGAYEMWSAAVN 60

Query: 65   AGIQPIIGCQ----------------LDIDMQDNLKMTNQGKTP-----FPTVPSIVLLV 103
            AGI+PIIG +                 D +   +L   ++ + P        +  + +  
Sbjct: 61   AGIKPIIGIEAYVTPETARQDPTRVSWDTNWNPDLDPLHRRRNPDDVSGGGVITHLTMWA 120

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
               EG   L++  +   L  +  +  R+    L +  ++G+I  +G  SG I        
Sbjct: 121  ENDEGLVNLMKASTDANLEGRVMRYPRMDKEILAKY-SKGIIASSGCPSGIIQTRLRLGQ 179

Query: 164  SQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLS 221
               A +    F+ +FG D  Y+    H    ++     ++ +A     PL+ATN+S +  
Sbjct: 180  FDDALRAAGEFQDIFGRDNFYIEFMDHGLKIEKQVTDGLLDIAKKLNAPLLATNDSHYTR 239

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
             ED  A D ++ +   + + +  R +     +Y+K+  EM  +F DLPEA +NT+EIA R
Sbjct: 240  AEDAGAQDAMLCINSGSTLDEPGRFKFDGTGYYIKSAEEMRELFKDLPEACDNTLEIAER 299

Query: 281  CSFILQVH--APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
            C+ +   H     +P+F   +C +   E    L+ K   GLE R        G  + +  
Sbjct: 300  CNVMFDDHEDGAFMPQF---DCPEGWDETSLFLK-KVEEGLERRY------NGKPSLEVL 349

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            ++ D+E  VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DPL
Sbjct: 350  RQADYECGVICQMQFCGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPL 409

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               L+FERFLNP+R+S+PD D+DF  D R  V+ YV  KYG ++VAQ + +G+++ K AL
Sbjct: 410  EHGLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQAL 469

Query: 459  RDVGRALQMPYSQVDRLCKLIP-------NDPAHPV---SLQAIADDSRFREARLADPSV 508
            +D  R +   +S  D++ K +P       + P H +   S +  A+   FRE   +DP  
Sbjct: 470  KDSARIMGYDFSVGDKITKALPPAQTGGKDIPLHDIFDPSAKRYAEAREFRELYDSDPDT 529

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAG 567
             R+ + +  +EGL R    HA   ++G  P++   P+    R+D  V T       E  G
Sbjct: 530  KRITDEAMGIEGLIRQTGVHACATIMGSEPITNTSPLLE--RTDGTVTTTLEYHTCETLG 587

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGL  LT+++ +L+ +   G  ++D + IP DD  TY LL+   TLG+FQL+S 
Sbjct: 588  LVKMDFLGLSNLTVIRDTLNNIEANGKERIDHTKIPLDDRPTYDLLSRGDTLGVFQLDSD 647

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLI-DPM-- 681
            GMR  L+ ++P+   DI AL++LYRPGP  +D+   Y  RKNG +KI  IHP + +P+  
Sbjct: 648  GMRSLLKTLKPNNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKE 707

Query: 682  -LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
             L ET G+I+YQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G
Sbjct: 708  VLDETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHG 767

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             S+  A  ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +
Sbjct: 768  YSEEAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKD 827

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM--EASA 858
            K   +  +AR+  IQ++ P VN    ++    + + + L AI+ VG      I+    + 
Sbjct: 828  KTALYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGKNAVDAIIAERENG 887

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
               + +  DF  RV  + LNRR++ESL+ AGA D    +R  L    +        +++ 
Sbjct: 888  HGKYVNFTDFIKRVPLEALNRRLVESLIKAGAFDSIDPNRRALFTIHETAINSVVGLKRK 947

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVE-------NSSVRFENEQRVLGFYFSGHPLDVY 971
            +     ++FA    +  +   +    V+       +   +   E+ +LG Y S HPL   
Sbjct: 948  QAEGQFDLFADLDDSKENDSAMGDAMVQVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGM 1007

Query: 972  KPI---LRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            + I   LR+M I    +   ++  G  + +A ++ +  ++ ++KG+    VT  +     
Sbjct: 1008 QSILVSLREMSIAHLIDRAGSMPDGQQVTIAGLITNVDRRVSKKGNPWAIVTVEDLESSI 1067

Query: 1028 EANFF 1032
            +  FF
Sbjct: 1068 QCMFF 1072


>gi|281421262|ref|ZP_06252261.1| DNA polymerase III, alpha subunit [Prevotella copri DSM 18205]
 gi|281404797|gb|EFB35477.1| DNA polymerase III, alpha subunit [Prevotella copri DSM 18205]
          Length = 1236

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 378/1105 (34%), Positives = 568/1105 (51%), Gaps = 102/1105 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----------Q 60
            FVHL VH+ YS+L+G   + +++DK   D    +A+TD   +F   E +          +
Sbjct: 4    FVHLHVHTQYSILDGQSKIPHLVDKAIKDGMKGMAVTDHGVMFGIKELTDYCGKINKDRK 63

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            K      +PIIGC++ +  +   K   +      +   +++L     GY+ LI+LVS  +
Sbjct: 64   KEGLEPFKPIIGCEMYVARR--TKADREKDKGDMSGYHLIVLAKNYNGYKNLIKLVSNSW 121

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            + D      R   + L++   E LI+ +   +G +         + A +    +  LFGD
Sbjct: 122  V-DGYYMRPRTDRADLEKY-HEDLIVCSACIAGEVPSKILHGDLEGAREACQWYHNLFGD 179

Query: 181  RLYVNLQRHRGYD-----RYRES---------QVVQLAYTHELPLVATNNSLFLSEEDYE 226
              Y+ LQRH+  D       RE+         +++++A    + LV TN+  F  +E  E
Sbjct: 180  DYYLELQRHKVPDDPSLLANREAYELQQRANKELIKMAREFNIKLVCTNDCHFEDKETAE 239

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ +A    +   +R R +   + K R EM  +FSD+PEAL NT+E+  +      
Sbjct: 240  AHDHLLCIATGKDLDDPNRMRYSKQEWFKTRQEMNEVFSDIPEALSNTLEVLDKVEIYSI 299

Query: 287  VHAPILPRFIEKEC-------------DDIQKE-------------EENE---------- 310
             H PI+P F   E              +D+ KE             EE +          
Sbjct: 300  DHGPIMPFFPIPESFGTEEQLRQKVSEEDLYKEFTSDENGKNPLPPEEGQKVIDRLGGYD 359

Query: 311  --LRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R K  A     LA     K Y     +D  + ++FEL+V+  M F GYFLIV+DFI+
Sbjct: 360  KIYRIKFEAEYLRHLAYEGAKKLYGDPLPEDVDEHVNFELHVMKTMGFPGYFLIVSDFIR 419

Query: 366  WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF  
Sbjct: 420  AAREELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDTDFDD 479

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN--- 481
            D R +V+R+V +KYGHE  A IIT+GS+  K +++DV R  ++P  + + LCK IP+   
Sbjct: 480  DGRGKVLRWVMDKYGHENCAHIITYGSMATKNSIKDVARVEKLPLDKANALCKAIPDRLP 539

Query: 482  DPAHPVSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            D A      AI      REA  + DP     ++ ++ LEG  R    HA G +I   P+S
Sbjct: 540  DGAKMNLTNAIKYTPELREAEFSNDPRESNTIKYAKMLEGTIRGTGIHACGFIICRDPIS 599

Query: 541  QLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
              VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ ++++   + Q  G 
Sbjct: 600  NWVPVSTADDPDFPGLKTAVTQYDGHVIETTGLIKMDFLGLKTLSEMKEACKVIKQTTGD 659

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VDL  IP DD  TY L     T+G FQ ES GM++ L  ++P   ED+IA+ +LYRPGP
Sbjct: 660  VVDLDTIPIDDELTYQLYQRGQTIGTFQFESPGMQKYLRELKPTVFEDLIAMNALYRPGP 719

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RKNGK+ I    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+D LR
Sbjct: 720  MDYIPDFIARKNGKQAITYDIPCMEKYLKDTYGITVYQEQVMLLSRQLASFTRGESDALR 779

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +AMGKK K  +D  K +FI    +NG    +   I+    KFA Y FNKSHA  Y+ ++Y
Sbjct: 780  KAMGKKKKAIVDAMKPKFIKQGQENGHDPKVLEKIWGDWEKFASYAFNKSHATCYSWVAY 839

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN- 833
            QTA++K HYP E++AA MT     + +I K  ++ +   I+ + P VN     F V ++ 
Sbjct: 840  QTAYLKAHYPAEYMAALMTRRFAQITEITKLMEECQSMGIKTLGPDVNESYRVFGVNEHG 899

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + L+AIKG+G   A  I+ E   + P+ S+ DF  RVD   +NR+  E+L  +G  D
Sbjct: 900  EIRFGLSAIKGMGAPAADAIVAERLKNGPYKSIFDFAERVDYSSVNRKAFETLALSGGFD 959

Query: 893  CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF-S 944
             FG  R Q           LD + +Y Q  ++ +     ++F    GT + +I       
Sbjct: 960  SFGIRREQFFGKNNKGETFLDTLVRYGQLFQQEQHEAANSLFG---GTEAIEIATPPIPD 1016

Query: 945  VENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKMGIK-----GYEESVATIRGNNIRL 997
             E+ S   R   E+ ++G Y S HPLD Y  IL  +        G ++ +A  +  ++ L
Sbjct: 1017 AESWSTIERLNRERELVGIYLSAHPLDEYSIILNSLCNTHCSELGDKQELA--KKEDVVL 1074

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSE 1022
              ++   + K T+ G   G+VT  +
Sbjct: 1075 GGIITGVKSKFTKTGKPCGFVTLED 1099


>gi|261337490|ref|ZP_05965374.1| DNA polymerase III, alpha subunit [Bifidobacterium gallicum DSM
            20093]
 gi|270277885|gb|EFA23739.1| DNA polymerase III, alpha subunit [Bifidobacterium gallicum DSM
            20093]
          Length = 1185

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 357/1086 (32%), Positives = 583/1086 (53%), Gaps = 78/1086 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++  FVHL  H+ YSLL+GA  + N++ +       A+ ITD  N+  A E   +A A
Sbjct: 1    MTQTADFVHLHNHTHYSLLDGASKIPNLVRRTKELGMNAVGITDHGNMHGAYELWSEAVA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT-------------VPSIVLLVSTAEGYQR 111
             G++PI+G  ++          ++ +  + T             +  + L     EG   
Sbjct: 61   NGVKPILG--IEAYATPETSRFDKSRVHWGTEEQRRDDVSGGGLITHLTLWAENDEGLVN 118

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L++  S   L  +  +  R+    LQ    +G+I  +G  SG +           A +  
Sbjct: 119  LLKASSVANLEGRVMRYPRMDKEVLQTY-AKGIICGSGCPSGIVQTRLRLGQFDEALRAA 177

Query: 172  LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
               + +FG +  Y+ L  H    +R   + ++ +A   + PL+ATN+S ++  ED  A D
Sbjct: 178  GELQDIFGKENFYIELMDHNLSIERKVTNDLLTIAKKLDAPLLATNDSHYVMPEDASAQD 237

Query: 230  VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             ++ +   + + +  R +   + +YL+   EM  +F +LPEA +NT+E+A RC+ I   H
Sbjct: 238  AMLCINSGSTLDEPGRFKFEGEGYYLRPAEEMRELFKELPEACDNTLEVAERCNVIFDDH 297

Query: 289  --APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                 +P F   +C +   E    LR K   GLE R        G   ++  ++ D+E  
Sbjct: 298  EDGAFMPEF---DCPEGWDETSLFLR-KVEEGLEKRY------DGNPPEEVLKQADYECG 347

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            +I +M+F GYFL+VAD+I WAK++++ VGPGRGS AG++ AYA+ ITD+DPL+  L+FER
Sbjct: 348  IICQMQFCGYFLVVADYINWAKEHDVMVGPGRGSAAGAMVAYAMGITDLDPLQHGLIFER 407

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+S+PD D+DF  + R  V+ YV +KYGH++VAQ + +G+++ K AL+D  R + 
Sbjct: 408  FLNPERVSLPDIDVDFDPEGRMRVLDYVADKYGHDKVAQCVIYGTIKTKQALKDSARIMG 467

Query: 467  MPYSQVDRLCKLIPNDPAHP----VSLQAI--ADDSRFREARL------ADPSVDRLLEI 514
              +S  +R+ K +P  PA      ++++ I   D  R+ EAR       +D  V R+ + 
Sbjct: 468  YEFSMGERVTKALP--PAQTGGKDIAIRDIFNPDAKRYAEAREYRELYDSDADVKRITDQ 525

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDF 573
            +  +EGL R    HA   ++G +P++   P+    R+D  V T F     E  GL+K DF
Sbjct: 526  AMGIEGLIRQTGVHACATIMGSKPITDTSPLLE--RTDGTVTTTFEYHTCETLGLVKMDF 583

Query: 574  LGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL  LT++  +L  +   G + +D + IP DD  T+ LL++  TLG+FQL+S GMR  L
Sbjct: 584  LGLSNLTVIHDTLKNIENNGKESIDYTKIPLDDKATFELLSSGETLGVFQLDSDGMRSLL 643

Query: 633  EGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQ 686
            + ++PD   DI AL++LYRPGP  +D+   Y  RKNG+++I  IHP     ++P+LKET 
Sbjct: 644  KMLRPDNFSDISALIALYRPGPMGMDSHTNYAKRKNGQQQIDPIHPEVAEALEPILKETY 703

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+I+YQEQ+   A++L+GYSL +ADVLRRAMGKK  E + K+K  F  G   +G S+  A
Sbjct: 704  GLIVYQEQIQFAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFQGMKDHGYSEEAA 763

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              ++++   FA Y FNK+H+AAY +ISY TA++K HYPVEF+AA +    +N +K   + 
Sbjct: 764  QAVWDVFLPFAGYAFNKAHSAAYGLISYWTAYLKAHYPVEFMAALLQNAKNNKDKTALYL 823

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM--EASADKPFDS 864
             +AR+  I+++ P VN    ++    + + + L A++ VG +  + I+    +    + +
Sbjct: 824  GEARRMGIKVLSPDVNESLYEYSAVGDVVRFGLGAVRNVGESAVQDIIAERNNGKGKYVN 883

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD-NIQKYAQWVEKNRTNKH 923
              D+  RV    LNRR++ESL+ AGA D    +R  L Q  +  I  Y   +++ +    
Sbjct: 884  FMDYIQRVPLPALNRRLVESLIKAGAFDSIEPNRRALFQVHEAAIDSYVN-IKRKQAEGQ 942

Query: 924  ENIFAHEKG-----TFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI--- 974
             ++FA   G     T  D +I +      +   +   E+ +LG Y S HPL   + +   
Sbjct: 943  FDLFADLDGDEKSDTMGDARIDIPDIEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVLAG 1002

Query: 975  LRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP---------A 1024
            LR+M I    +    +     + +A +V   ++K +++G+    +T  +           
Sbjct: 1003 LREMSIARLIDRAPQMEDRTQVTIAGLVTHVERKVSKRGNAWALITVEDMESSIQCMLFG 1062

Query: 1025 KEYEAN 1030
            K YEAN
Sbjct: 1063 KVYEAN 1068


>gi|255693699|ref|ZP_05417374.1| putative DNA polymerase III alpha subunit [Bacteroides finegoldii DSM
            17565]
 gi|260620516|gb|EEX43387.1| putative DNA polymerase III alpha subunit [Bacteroides finegoldii DSM
            17565]
          Length = 1268

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 377/1149 (32%), Positives = 595/1149 (51%), Gaps = 140/1149 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+           
Sbjct: 4    FVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63

Query: 61   ------KACAAGIQ-----------------------------PIIGCQL-----DIDMQ 80
                  K   AGI+                             PIIGC++      +D++
Sbjct: 64   GEVKDLKKRIAGIEAGTIECEDKEAEIADCKAKIVEAESKLFKPIIGCEMYVARRTMDLR 123

Query: 81   DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG 140
            +  K+   G         +++L    +GY  LI+LVS  +      +  R   S L++  
Sbjct: 124  EG-KLDQSGY-------HLIVLAKNEKGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY- 173

Query: 141  TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDR 194
             EGLI+ +    G I +    +    AE+ +  +K LFGD  Y+ +QRH+       ++ 
Sbjct: 174  HEGLIVCSACLGGEIPKRITNDQFAEAEEAIQWYKNLFGDDFYLEMQRHKATVPRANHEC 233

Query: 195  YR-----ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            Y         +++ A  + + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T
Sbjct: 234  YPMQVKVNKYLMEYAQKYNIKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYT 293

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP---------------- 293
               ++K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P                
Sbjct: 294  KQEWMKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRA 353

Query: 294  RFIEKECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKG 331
            +F EK+  D          +  EE+ + + K + G +             +LA     + 
Sbjct: 354  KFTEKDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRI 413

Query: 332  YH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTA 387
            Y    +++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  A
Sbjct: 414  YGEPLSEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVA 473

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            Y L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA II
Sbjct: 474  YCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHII 533

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA- 504
            T+G++  K A++DV R  ++P S+ DRL KL+P+  P   ++L  AIA     + A  + 
Sbjct: 534  TYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEASS 593

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNM 560
            DP V   L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+  
Sbjct: 594  DPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEG 653

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
              IE  GLIK DFLGLKTL++++++++ +   R ++VD+  I  +D  TY L +   T+G
Sbjct: 654  SVIEDTGLIKMDFLGLKTLSIIKEAVENIRLSRAIEVDVDQIDINDPATYKLYSDGRTIG 713

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
             FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++
Sbjct: 714  TFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVME 773

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
              LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KN
Sbjct: 774  KYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKN 833

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+
Sbjct: 834  GHDPKVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNI 893

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-S 857
              I K   + +   IQ + P VN   + F V  D  I + L A+KGVG    + IME   
Sbjct: 894  TDITKLMDECKAMGIQTLGPDVNESNLKFTVNRDGNIRFGLGAVKGVGEAAVQSIMEERE 953

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQ 909
             + PF  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + 
Sbjct: 954  KNGPFTGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLM 1013

Query: 910  KYAQWVEKNRTNKHENIFAHEK----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +Y    + ++     ++F  E      T      +E++S  +   R   E+ ++G Y S 
Sbjct: 1014 RYGNRYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLD---RLNRERDLVGIYLSA 1070

Query: 966  HPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            HPLD +  +L  +        E  A + G  I +  +V S ++  ++ G+  G     + 
Sbjct: 1071 HPLDEFSIVLEHVCNTRMADLEDKAALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDY 1130

Query: 1024 AKEYEANFF 1032
            +   E  F+
Sbjct: 1131 SGSTEIPFW 1139


>gi|255523410|ref|ZP_05390379.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|255512868|gb|EET89139.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
          Length = 959

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 316/777 (40%), Positives = 470/777 (60%), Gaps = 42/777 (5%)

Query: 232 MAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
           M +    VV++++R R   D  YLK+  EM  IFS +PEALENTV+IA +C+F  + H  
Sbjct: 1   MCIQTGKVVNEENRMRYPSDEFYLKSPEEMYKIFSRVPEALENTVKIAEQCNFDYEFHKS 60

Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGL-----------EVRLAQGAIAK----GYHAQ 335
            LP+F   E      E    LR+    GL           EV  +  ++ +       A+
Sbjct: 61  KLPKFPLPE----HVEPYEYLRDLCYKGLIQRYKEFEQLKEVSFSIESVNELADSNDEAK 116

Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
              +RL++EL++I +M +  YFLIV DFI ++ +N I  GPGRGS AGS+ AY L IT I
Sbjct: 117 KLVERLEYELSIIKQMGYVDYFLIVWDFINFSVENGIMTGPGRGSAAGSIIAYTLGITKI 176

Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
           DP+++SLLFERFLNP+R+SMPD D DFC +RR EVI YV  KYG   V+QIITFG++ A+
Sbjct: 177 DPIKYSLLFERFLNPERVSMPDIDSDFCYERRGEVIDYVVRKYGENSVSQIITFGTMAAR 236

Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEI 514
           A +RDVGRA+  PY++VDR+ K+IP  P   +++ +A+  +S   EA   +     L++I
Sbjct: 237 ACIRDVGRAMNYPYAEVDRIAKMIPAAPGKAITIDKALELNSELEEAYENEERTKALIDI 296

Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
           ++ LEGL RH STHAAG+VI  +PL   VPM ++   D  VTQF M  +E+ GL+K DFL
Sbjct: 297 ARALEGLPRHTSTHAAGVVIASQPLVNYVPMQKN--EDNIVTQFTMGTLEELGLLKMDFL 354

Query: 575 GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
           GL+TLT+L+ ++  +   +G+ +DL  I +DD   Y ++    T+GIFQLES+GM   ++
Sbjct: 355 GLRTLTVLRDAVSMVKDNKGINIDLDKIDYDDKNVYKMIGEGKTVGIFQLESAGMTSFMK 414

Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
            ++PD +EDIIA +SLYRPGP+  I  Y + KN  E I  + P ++ +L  T G ++YQE
Sbjct: 415 ELRPDSLEDIIAGISLYRPGPMAEIPKYISNKNNPEGIEYLTPELESILGVTYGCMVYQE 474

Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI------------SGASKNGI 741
           QVM+I + L+GYS+  +D++RRAM KK    M++++  FI             G  KNGI
Sbjct: 475 QVMEIVRKLAGYSMGRSDLVRRAMSKKKHHVMEEERHNFIYGIVDEEGVEKVPGCIKNGI 534

Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
           S+  A  IF+ +  FA Y FNKSHAA+YAV+++QTA+M  +YP E++AA +     + EK
Sbjct: 535 SEDAADKIFDSMMDFASYAFNKSHAASYAVVAFQTAYMIHYYPTEYIAAMLNSVKGDNEK 594

Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
           +  + + A +  IQ++ P++N     F V +++I + L+AIK VG      I+++   K 
Sbjct: 595 VAYYTRFADEIGIQVLTPNINESYAKFTVKEDKIRFGLSAIKNVGENVIDSIVKSRERKG 654

Query: 862 -FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            F +L DFC+++D   +N+RV+ESL+ AGA DCF   R +LL   + +        K   
Sbjct: 655 VFSNLVDFCNKIDVSCINKRVVESLIKAGAFDCFKVYRSKLLAVYEKVLDGVSNSRKKNI 714

Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPIL 975
           +   ++F   K     ++ +E   ++    R     E+ + G Y SGHPL+ Y+  L
Sbjct: 715 DGQLSLFTDFKKI---EVKIEYPEIKEFEKRHILAMEKEMTGLYLSGHPLEEYEKSL 768


>gi|212715528|ref|ZP_03323656.1| hypothetical protein BIFCAT_00426 [Bifidobacterium catenulatum DSM
            16992]
 gi|212660895|gb|EEB21470.1| hypothetical protein BIFCAT_00426 [Bifidobacterium catenulatum DSM
            16992]
          Length = 1196

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 355/1087 (32%), Positives = 570/1087 (52%), Gaps = 74/1087 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S +FV L  H+ YSLL+GA  + +++ +      PA+ ITD  N+  A E    A  
Sbjct: 1    MATSGNFVQLHNHTHYSLLDGASKIPDLVKRAKELNMPAVGITDHGNMHGAYEMWSTAVK 60

Query: 65   AGIQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102
             G++PIIG +                       DID Q   +  N   +    +  + + 
Sbjct: 61   EGVKPIIGIEAYVTPETARQDQTRVSWDTNWNPDIDPQHRRRNPND-VSGGGLITHLTMW 119

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
              T EG   L++  +   L  +  +  R+    L +  ++G+I  +G  SG I       
Sbjct: 120  AETDEGLVNLMKASTDANLEGRVMRYPRMDKEILAKY-SKGIIASSGCPSGIIQTRLLLG 178

Query: 163  SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220
                A +     + +FG D  Y+    H    ++     ++ +A     PL+ATN+S ++
Sbjct: 179  QFDEALRAAGELQDIFGRDNFYIEFMDHGLKIEKQVTDGLLDIAKKLNAPLLATNDSHYV 238

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
              ED  + D ++ +   + + +  R +     +YLK+  EM  +F D+PEA +NT+EIA 
Sbjct: 239  RAEDAGSQDAMLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDIPEACDNTLEIAE 298

Query: 280  RCSFILQVH--APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
            RC+ +   H     +P+F   +C +   E    LR K   GLE R        G+   + 
Sbjct: 299  RCNVMFDDHEDGAFMPQF---DCPEGWDETSLFLR-KVEEGLEQRY------DGHPPIEV 348

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             ++ D+E  VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP
Sbjct: 349  LKQADYECGVICQMQFCGYFLVVADYINWAKSHGVMVGPGRGSAAGAMVAYAMGITELDP 408

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
            ++  L+FERFLNP+R+S+PD D+DF  D R  V+ YV +KYG ++VAQ + +G+++ K A
Sbjct: 409  IKHGLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGDKYGRDKVAQCVIYGTIKTKQA 468

Query: 458  LRDVGRALQMPYSQVDRLCKLIP-----------NDPAHPVSLQAIADDSRFREARLADP 506
            L+D  R +   +S  +R+ K +P            D   P S +  A+   FRE   +DP
Sbjct: 469  LKDSARIMGYEFSMGERITKALPPAQTGGKDIPLRDIFEPTS-KRYAEAREFRELYDSDP 527

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEK 565
               R+ + +  +EGL R    HA   ++G  P+S   P+    R+D  V T       E 
Sbjct: 528  DAKRVTDEAMGIEGLIRQTGVHACATIMGSEPISNTSPLLE--RTDGTVTTTLEYHTCET 585

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GL+K DFLGL  LT+++ +L+ +   G  ++D + IP DD  TY LL+   TLG+FQL+
Sbjct: 586  LGLVKMDFLGLSNLTVIRDTLNNIEANGKERIDHTKIPLDDRATYDLLSRGDTLGVFQLD 645

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLI-DPM 681
            S GMR  L+ ++P+   DI AL++LYRPGP  +D+   Y  RKNG +KI  IHP + +P+
Sbjct: 646  SDGMRSLLKTLKPNNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPL 705

Query: 682  ---LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
               L ET G+I+YQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  +
Sbjct: 706  KEVLDETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKE 765

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            +G S+  A  ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N
Sbjct: 766  HGYSQEAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTN 825

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-- 856
             +K   +  +AR+  IQ++ P VN    ++    + + + L AI+ VG      I++   
Sbjct: 826  KDKTALYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGKAAVDAIVKERD 885

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
             +   + +  DF  RV  + LNRR++ESL+ AGA D    +R  L    +        ++
Sbjct: 886  GSHGRYVNFPDFIKRVPMEALNRRLVESLIKAGAFDSIDPNRRALFTIHEAAINSVVGLK 945

Query: 917  KNRTNKHENIFA-------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            + +     ++FA        + G     +++      +   +   E+ +LG Y S HPL 
Sbjct: 946  RKQAEGQFDLFADLEDSGEDDAGMGDAMVSVPDVEEWDKKTKLNFEREMLGLYVSDHPLS 1005

Query: 970  VYKPI---LRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
              + I   L +M I    +  A +  G  + +A ++ +  ++ ++KG+    VT  +   
Sbjct: 1006 GMQSILVSLSEMSIAHLIDRAANMPDGQQVTVAGLITNVDRRVSKKGNPWAIVTIEDLES 1065

Query: 1026 EYEANFF 1032
              +  FF
Sbjct: 1066 SIQCMFF 1072


>gi|15805534|ref|NP_294230.1| DNA polymerase III subunit alpha [Deinococcus radiodurans R1]
 gi|14194695|sp|Q9RX08|DPO3A_DEIRA RecName: Full=DNA polymerase III subunit alpha
 gi|6458195|gb|AAF10085.1|AE001909_7 DNA polymerase III, alpha subunit [Deinococcus radiodurans R1]
          Length = 1335

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 312/731 (42%), Positives = 445/731 (60%), Gaps = 60/731 (8%)

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +R ++EL+VI  M F  YFLIVAD+I WAK ++I VGPGRGSGAGS+ AYA+ IT++DPL
Sbjct: 472  RRAEYELSVINNMGFPDYFLIVADYINWAKDHDISVGPGRGSGAGSLVAYAIRITNLDPL 531

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
             F LLFERFLNPDR+SMPDFDIDF   RR EVI YVQ KYG ++VAQI TFG++ +KA L
Sbjct: 532  EFELLFERFLNPDRISMPDFDIDFNDARRTEVIGYVQEKYGTDKVAQIATFGTMASKACL 591

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL------ 512
            +DV R + + Y++VD++ KLIP       SL+         +AR A P + ++L      
Sbjct: 592  KDVARVMGLEYAKVDKVSKLIPIKFGKSYSLE---------QAREAVPDIQQMLAEDAQL 642

Query: 513  ----EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
                E +QKLEGL RHAS HAAG+VIG   L+ LVP+ RD   +  V Q++MK +E  GL
Sbjct: 643  LEAYEFAQKLEGLTRHASVHAAGVVIGREELTNLVPVMRDTSGEGQVCQYDMKSVEDIGL 702

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQL 623
            IK DFLGL+TL+ L ++   L + G        D   IPFDD +TY L++   T G+FQL
Sbjct: 703  IKMDFLGLRTLSFLDEAKRILRESGTDFEEKYGDFDHIPFDDEKTYELMSRGDTKGVFQL 762

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI-------VSIHP 676
            E +G+  A   ++P  + DIIAL +LYRPGP++NI  Y  R +G E++        +   
Sbjct: 763  EGAGIADASRRLKPRRLADIIALSALYRPGPMENIPTYVRRHHGIEEVDYDKDGFPNSKQ 822

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
             ++ +L+ET G+ +YQEQ+MQIA  ++GYSL  AD+LRRAMGKK  EEM +Q++ F+ GA
Sbjct: 823  WLEKILQETYGIPVYQEQIMQIASEVAGYSLGGADLLRRAMGKKDAEEMKRQRQLFVVGA 882

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             + G+ +     +F++L  FA+YGFNKSH+AAY VI+YQTAW+K +YPV+F+AA +T+E 
Sbjct: 883  KEKGVPEDEGNKLFDMLDAFANYGFNKSHSAAYGVITYQTAWLKANYPVQFMAALLTVER 942

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
             + +K+ ++  DAR+ ++ ++PP +N    DF V    I + L AIKG+G +    I+E 
Sbjct: 943  RDSDKVAEYVSDARKMDLHVLPPDINRSSSDFAVAGEEILFGLYAIKGLGESAVLRILEE 1002

Query: 857  SADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL-DNIQKYAQW 914
                  F SL DFCSR+ +K  NR+ LESL+ +GA D FG  R QL++SL D ++  A  
Sbjct: 1003 REKAGAFKSLADFCSRLGNKVCNRKALESLIKSGAFDAFG-ERHQLIESLEDALEDAAGT 1061

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVE---NSSV-------RFENEQRVLGFYFS 964
             E N         A  +   S    +E+   E    SS+       R   E+  LG Y S
Sbjct: 1062 AEIN---------ARAQSGMSMMFGMEEVKKERPLRSSIAPYSDLERLAIEKEALGLYIS 1112

Query: 965  GHPLDVYKPILRKMGIKGYE-------ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            GHPL+ ++ +      +  +       ++VA  +     LA M+    +K T+ G  +  
Sbjct: 1113 GHPLEQHEGLREAASCRVSDLDAWFALQNVAPGKRQKAVLAGMIEGVVKKPTKSGGMMAR 1172

Query: 1018 VTFSEPAKEYE 1028
               ++ + + E
Sbjct: 1173 FILADESGQME 1183



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 143/306 (46%), Gaps = 32/306 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNIL----DKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           F HL  H+ YSLL+GA  L ++L    +     Q PA+A+TD  N+  A+ F   A    
Sbjct: 24  FAHLHQHTQYSLLDGAAKLKDLLKWAKEVTPEGQTPALAMTDHGNMHGAVHFYNYAMGME 83

Query: 67  IQPIIGCQLDI-----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
           ++PIIG +  +       +D  +  +  K  F     + LL    EGYQ L  L SR Y 
Sbjct: 84  VKPIIGYEAYVVPGFGTRRDRSRAQDGEKGIF----HLTLLARDFEGYQNLCRLSSRGYT 139

Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
            +      RI    LQE   +G+I  +G     + +         A  RLL +++LFGD 
Sbjct: 140 -EGYYYKPRIDHELLQE-HHKGIIAFSGCLGSEVQQLLMQGREDDARARLLWYRELFGDN 197

Query: 182 LYVNLQRHRGYDRYRESQVVQLAYTHELP--LVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            ++ +Q H G    +++  +  A+  EL   +VATN+  ++ + D  AH+ L+A+     
Sbjct: 198 YFIEIQDH-GLPEQKKNNPILKAWAQELGIGMVATNDGHYVKKSDATAHETLLAIQTKAT 256

Query: 240 VSQKDRPRVTPDH-YLKNRSEM-----VSIFSDLPEALENTVEIARRCSFIL------QV 287
           ++ ++R +   D  Y+KN  EM     VS + + P   +NT  IA  C+  L      Q 
Sbjct: 257 LADENRFKFPCDEFYVKNLEEMQRALPVSEWGEEP--FDNTAHIAELCNVELPVGKKRQY 314

Query: 288 HAPILP 293
             P LP
Sbjct: 315 QMPQLP 320


>gi|301161727|emb|CBW21267.1| putative DNA polymerase III alpha subunit [Bacteroides fragilis 638R]
          Length = 1294

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 366/1141 (32%), Positives = 592/1141 (51%), Gaps = 126/1141 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-------- 62
            FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F+  EF+           
Sbjct: 34   FVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGPK 93

Query: 63   -----------------------------CAAGI--------QPIIGCQLDIDMQDNLKM 85
                                         C A I        +PIIGC++ +  +    M
Sbjct: 94   GEIKDLKKRIAAIEAGEVECADKDAEIADCKAKIADAEGRLFKPIIGCEMYVARR---TM 150

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
              +   P  +   +++L    +GY  LI+LVSR +      +  R   + L++   EGLI
Sbjct: 151  DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKGYYMRP-RTDRNELEKY-HEGLI 208

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR--- 196
            + +    G + +         AE+ +  +K LFGD  Y+ +QRH+       ++ Y    
Sbjct: 209  ICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQV 268

Query: 197  --ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                 +++ +  + + L+ TN+  F++EE  EAHD L+ ++    +   +R   T   ++
Sbjct: 269  NVNKHLIEYSKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEWM 328

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298
            K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P                ++ EK
Sbjct: 329  KTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTEK 388

Query: 299  ECDD----------IQKEEENELRNKAVAGLE----VRLAQGAI-------AKGYHAQ-- 335
            +  D          +  EE  + + K + G +    ++L    +       AK ++    
Sbjct: 389  DLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDPL 448

Query: 336  --DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              + ++RL FEL+++  M F GYFLIV DFI   +   + +GPGRGS AGS  AY L IT
Sbjct: 449  SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAVAYCLQIT 508

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
             IDP+++ LLFERFLNPDR+S+PD DIDF  D R EV+R+V  KYG E+VA IIT+G++ 
Sbjct: 509  KIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTMA 568

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSVDR 510
             K A++DV R  ++P ++ DRL KL+P+  P   ++L+ AI      + A  + DP V  
Sbjct: 569  TKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEASPDPLVRD 628

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKA 566
             ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE  
Sbjct: 629  TMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIEDT 688

Query: 567  GLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GLIK DFLGLKTL++++++++ +   +G+++D+  I  +D  TY L +   T+G FQ ES
Sbjct: 689  GLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTIGTFQFES 748

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
            +GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK+T
Sbjct: 749  AGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLKDT 808

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  KNG    +
Sbjct: 809  YGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDPKV 868

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I K 
Sbjct: 869  LEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSNITDITKL 928

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADK-PFD 863
              + +   +Q + P VN   + F V  N  I + L A+KGVG    + IME   +  PF 
Sbjct: 929  MDECKMMGVQTLGPDVNESNLKFTVNRNGNIRFGLGAVKGVGEAAVQSIMEERKENGPFK 988

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQWV 915
             + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y    
Sbjct: 989  GIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGETFLETLMRYGNRY 1048

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKP 973
            + ++     ++F  +     D  T E    E  N   R   E+ ++G Y S HPLD Y  
Sbjct: 1049 QADKAAAVNSLFGGD--NVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPLDEYAI 1106

Query: 974  ILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +L  +      E    + + G  I +  +V S ++  ++ G+  G     + +   E  F
Sbjct: 1107 VLEHVCNTHMSELDDKSALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAEIPF 1166

Query: 1032 F 1032
            F
Sbjct: 1167 F 1167


>gi|239931832|ref|ZP_04688785.1| DNA polymerase III subunit alpha [Streptomyces ghanaensis ATCC 14672]
 gi|291440200|ref|ZP_06579590.1| DNA polymerase III subunit alpha [Streptomyces ghanaensis ATCC 14672]
 gi|291343095|gb|EFE70051.1| DNA polymerase III subunit alpha [Streptomyces ghanaensis ATCC 14672]
          Length = 1179

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 365/1079 (33%), Positives = 568/1079 (52%), Gaps = 78/1079 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VH+ YSLL+GA  L ++ +         IA++D  NL  A +F   A  AG+ 
Sbjct: 4    PPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHSAQKAGVT 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY-QRLIELVSRMYLLDQGK- 126
            PIIG +  +  +      N+ K  +         VS + GY  + +  V+R  L +  + 
Sbjct: 64   PIIGIEAYVAPESR---RNKRKILWGQPHQKRDDVSGSGGYTHKTMWAVNRTGLHNLFRL 120

Query: 127  QSVRICLSWLQEI----------GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
             S      WLQ+            +EG++  TG  SG +           A K    ++ 
Sbjct: 121  SSDAYAEGWLQKWPRMDKETIAQWSEGIVASTGCPSGEVQTRLRLGHFDEALKAAADYQD 180

Query: 177  LFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +FG DR ++ L  H G D   R R+  ++++     +P + TN+S +    +  AHD L+
Sbjct: 181  IFGKDRYFLELMDH-GIDIEHRVRDG-LLEIGKKLGIPPLVTNDSHYTYAHEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHA 289
             +     +S  DR +     +YLK+  EM +I S     E  +NT  IA           
Sbjct: 239  CIQTGKNLSDPDRFKFDGTGYYLKSTDEMYAIDSSDAWQEGCDNTRLIAEMVDTTGMFEK 298

Query: 290  -PILPRFIEKECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
              ++P+F      DI +   E +  R + + G+  R   G         D  +++++E++
Sbjct: 299  RDLMPKF------DIPEGYTEVSWFREETMRGMHRRFPDGI------PDDRMKQVEYEMD 346

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
             I  M F GYFL+VADFI WAKK  I VGPGRGS AGS+ AYAL ITD+DP+   L+FER
Sbjct: 347  TIISMGFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYALGITDLDPIPHGLIFER 406

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G+++AK A++D  R L 
Sbjct: 407  FLNPERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLG 466

Query: 467  MPYSQVDRLCKLIPNDP-AHPVSLQAIADDS--RFREARLA------DPSVDRLLEISQK 517
             PY+  DR+ K +P D     + L  I D S  R+ EA         +P V ++++ ++ 
Sbjct: 467  YPYAMGDRITKAMPADVLGKGIPLSGITDPSHPRYSEAGEVRSMYENEPDVKKVIDTARG 526

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EGL R    HAAG+++    +++ VP++      + +TQ++    E  GL+K DFLGL+
Sbjct: 527  VEGLVRQMGVHAAGVIMSSETITEHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLR 586

Query: 578  TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT++  ++  + A +G+ +DL  +P DD  T+ LL    TLG+FQ +   MR  L  M+
Sbjct: 587  NLTIMDDAVKMVKANKGIDIDLLSLPLDDPTTFDLLQRGDTLGVFQFDGGPMRSLLRLMK 646

Query: 637  PDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVII 690
            PD  EDI A+ +LYRPGP  +++   Y  RKNG+++I  IHP ++  LKE    T G+I+
Sbjct: 647  PDNFEDISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEVLDVTYGLIV 706

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQV + AQ+++GYSL EAD+LRR MGKK  EE++K    F +GA KNG S      ++
Sbjct: 707  YQEQVQKAAQIIAGYSLGEADILRRVMGKKKPEELEKNFVIFQAGARKNGYSDEAIQALW 766

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            ++L  FA Y FNK+H+AAY ++SY TA++K ++P E++AA +T   D+ +K   +  + R
Sbjct: 767  DVLVPFAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECR 826

Query: 811  QFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDF 868
            +  I+++PP+VN    +F   GD+ I + L+A++ VGT     I++   A   + S  D+
Sbjct: 827  RMGIRVLPPNVNESEANFAAQGDDVILFGLSAVRNVGTNVVESIIKCRKAKGKYTSFPDY 886

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              +VD+   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F 
Sbjct: 887  LDKVDAVVCNKRTTESLIKAGAFDSMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFG 946

Query: 929  HEKG------------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                            TF+D          + +     E+ +LG Y S HPL   + +L 
Sbjct: 947  GMGEEESGEPGFGLDVTFTD-------DEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLS 999

Query: 977  KMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G  +      G+   + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1000 DKADAGISQLTGGDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|253563964|ref|ZP_04841421.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_2_5]
 gi|265765339|ref|ZP_06093614.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_16]
 gi|251947740|gb|EES88022.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_2_5]
 gi|263254723|gb|EEZ26157.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_16]
          Length = 1273

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 366/1141 (32%), Positives = 592/1141 (51%), Gaps = 126/1141 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-------- 62
            FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F+  EF+           
Sbjct: 13   FVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGPK 72

Query: 63   -----------------------------CAAGI--------QPIIGCQLDIDMQDNLKM 85
                                         C A I        +PIIGC++ +  +    M
Sbjct: 73   GEIKDLKKRIAAIEAGEVECADKDAEIADCKAKIADAEGRLFKPIIGCEMYVARR---TM 129

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
              +   P  +   +++L    +GY  LI+LVSR +      +  R   + L++   EGLI
Sbjct: 130  DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKGYYMRP-RTDRNELEKY-HEGLI 187

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR--- 196
            + +    G + +         AE+ +  +K LFGD  Y+ +QRH+       ++ Y    
Sbjct: 188  ICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQV 247

Query: 197  --ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                 +++ +  + + L+ TN+  F++EE  EAHD L+ ++    +   +R   T   ++
Sbjct: 248  NVNKHLIEYSKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEWM 307

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298
            K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P                ++ EK
Sbjct: 308  KTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTEK 367

Query: 299  ECDD----------IQKEEENELRNKAVAGLE----VRLAQGAI-------AKGYHAQ-- 335
            +  D          +  EE  + + K + G +    ++L    +       AK ++    
Sbjct: 368  DLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDPL 427

Query: 336  --DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              + ++RL FEL+++  M F GYFLIV DFI   +   + +GPGRGS AGS  AY L IT
Sbjct: 428  SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAVAYCLQIT 487

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
             IDP+++ LLFERFLNPDR+S+PD DIDF  D R EV+R+V  KYG E+VA IIT+G++ 
Sbjct: 488  KIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTMA 547

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSVDR 510
             K A++DV R  ++P ++ DRL KL+P+  P   ++L+ AI      + A  + DP V  
Sbjct: 548  TKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEASPDPLVRD 607

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKA 566
             ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE  
Sbjct: 608  TMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIEDT 667

Query: 567  GLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GLIK DFLGLKTL++++++++ +   +G+++D+  I  +D  TY L +   T+G FQ ES
Sbjct: 668  GLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTIGTFQFES 727

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
            +GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK+T
Sbjct: 728  AGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLKDT 787

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  KNG    +
Sbjct: 788  YGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDPKV 847

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I K 
Sbjct: 848  LEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSNITDITKL 907

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADK-PFD 863
              + +   +Q + P VN   + F V  N  I + L A+KGVG    + IME   +  PF 
Sbjct: 908  MDECKMMGVQTLGPDVNESNLKFTVNRNGNIRFGLGAVKGVGEAAVQSIMEERKENGPFK 967

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQWV 915
             + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y    
Sbjct: 968  GIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGETFLETLMRYGNRY 1027

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKP 973
            + ++     ++F  +     D  T E    E  N   R   E+ ++G Y S HPLD Y  
Sbjct: 1028 QADKAAAVNSLFGGD--NVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPLDEYAI 1085

Query: 974  ILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +L  +      E    + + G  I +  +V S ++  ++ G+  G     + +   E  F
Sbjct: 1086 VLEHVCNTHMSELDDKSALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAEIPF 1145

Query: 1032 F 1032
            F
Sbjct: 1146 F 1146


>gi|291457517|ref|ZP_06596907.1| DNA polymerase III, alpha subunit [Bifidobacterium breve DSM 20213]
 gi|291381352|gb|EFE88870.1| DNA polymerase III, alpha subunit [Bifidobacterium breve DSM 20213]
          Length = 1185

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 362/1070 (33%), Positives = 562/1070 (52%), Gaps = 62/1070 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  H+ YSLL+GA  + ++  + A  + PA+ ITD  N+  A E      A G++P
Sbjct: 7    NFVQLHNHTHYSLLDGASKIPDLAKRAAELEMPAVGITDHGNMHGAYEMYTNCVANGVKP 66

Query: 70   IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            IIG +     +   QD  ++      Q +        I  L   AE  + L+ L+    +
Sbjct: 67   IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 126

Query: 122  LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +   + +R      + + T  +G+I  +G  SG I           A +    F+ +FG
Sbjct: 127  ANLEGRVMRYPRMDKEVLSTYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +      ++ +A   + PL+ATN+S ++  ED  A D ++ +   
Sbjct: 187  KDNFFIELMDHGLTIENQVTDDLLTIAKKLDAPLLATNDSHYVHAEDAGAQDAMLCINSG 246

Query: 238  TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--APILPR 294
            + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H     +P+
Sbjct: 247  SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLLIAERCNVMFDDHEDGAFMPQ 306

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            F   E  D    E +    K   GLE R        G    +  ++ D+E  VI +M+F 
Sbjct: 307  FPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLNVLKQADYECGVICQMQFC 356

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+S
Sbjct: 357  GYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVS 416

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            +PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  ++
Sbjct: 417  LPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEK 476

Query: 475  LCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLY 522
            + K +P  PA      +SL  I D S         FRE   +DP   R+ E ++ +EGL 
Sbjct: 477  VTKALP--PAATGGKDISLHDIFDPSAKRYAEAREFREMYDSDPDAKRITEEAKGIEGLI 534

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTL 581
            R    HA   ++G  P++   P+    R+D  + T F     E  GL+K DFLGL  LT+
Sbjct: 535  RQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNLTV 592

Query: 582  LQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +L  +   G   +D + IP DD ETY L+    TLG+FQL+S GMR  L+ ++PD  
Sbjct: 593  IHDTLKNIEANGKPAIDYTKIPLDDAETYKLMARGDTLGVFQLDSDGMRSLLKTLKPDNF 652

Query: 641  EDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQ 694
             DI AL++LYRPGP  +D+   Y  RKNG +KI  IHP ++  LK    ET G+IIYQEQ
Sbjct: 653  NDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQ 712

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            V   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  A  ++++L 
Sbjct: 713  VQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEAANAVWDILV 772

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  I
Sbjct: 773  PFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGI 832

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSR 871
            Q++ P VN     +    + + + L AI+ VG      I+ A  + P   F +  DF  R
Sbjct: 833  QVLSPDVNESVYAYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDFIRR 891

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V    LNRR++ESL+ AGA D    +R  L    +        +++ +     ++F+   
Sbjct: 892  VPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAD 951

Query: 932  GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIKGY 983
               ++      +T+      +   +   E+ +LG Y S HPL   + I   LR+M I   
Sbjct: 952  DGGAEAMGDASVTVPDIEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHL 1011

Query: 984  EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T+  G  + LA ++    ++ ++KG+    VT  +     +  FF
Sbjct: 1012 IDRAKTMGEGQQVTLAGLITGVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061


>gi|53712001|ref|YP_097993.1| DNA polymerase III subunit alpha [Bacteroides fragilis YCH46]
 gi|52214866|dbj|BAD47459.1| DNA polymerase III alpha subunit [Bacteroides fragilis YCH46]
          Length = 1294

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 366/1141 (32%), Positives = 592/1141 (51%), Gaps = 126/1141 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-------- 62
            FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F+  EF+           
Sbjct: 34   FVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGPK 93

Query: 63   -----------------------------CAAGI--------QPIIGCQLDIDMQDNLKM 85
                                         C A I        +PIIGC++ +  +    M
Sbjct: 94   GEIKDLKKRIAAIEAGEVECADKDAEIADCKAKIADAEGRLFKPIIGCEMYVARR---TM 150

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
              +   P  +   +++L    +GY  LI+LVSR +      +  R   + L++   EGLI
Sbjct: 151  DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKGYYMRP-RTDRNELEKY-HEGLI 208

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR--- 196
            + +    G + +         AE+ +  +K LFGD  Y+ +QRH+       ++ Y    
Sbjct: 209  ICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQV 268

Query: 197  --ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                 +++ +  + + L+ TN+  F++EE  EAHD L+ ++    +   +R   T   ++
Sbjct: 269  NVNKHLIEYSKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEWM 328

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298
            K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P                ++ EK
Sbjct: 329  KTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTEK 388

Query: 299  ECDD----------IQKEEENELRNKAVAGLE----VRLAQGAI-------AKGYHAQ-- 335
            +  D          +  EE  + + K + G +    ++L    +       AK ++    
Sbjct: 389  DLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDPL 448

Query: 336  --DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              + ++RL FEL+++  M F GYFLIV DFI   +   + +GPGRGS AGS  AY L IT
Sbjct: 449  SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAVAYCLQIT 508

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
             IDP+++ LLFERFLNPDR+S+PD DIDF  D R EV+R+V  KYG E+VA IIT+G++ 
Sbjct: 509  KIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTMA 568

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSVDR 510
             K A++DV R  ++P ++ DRL KL+P+  P   ++L+ AI      + A  + DP V  
Sbjct: 569  TKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEASPDPLVRD 628

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKA 566
             ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE  
Sbjct: 629  TMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIEDT 688

Query: 567  GLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GLIK DFLGLKTL++++++++ +   +G+++D+  I  +D  TY L +   T+G FQ ES
Sbjct: 689  GLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTIGTFQFES 748

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
            +GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK+T
Sbjct: 749  AGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLKDT 808

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  KNG    +
Sbjct: 809  YGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDPKV 868

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I K 
Sbjct: 869  LEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSNITDITKL 928

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADK-PFD 863
              + +   +Q + P VN   + F V  N  I + L A+KGVG    + IME   +  PF 
Sbjct: 929  MDECKMMGVQTLGPDVNESNLKFTVNRNGNIRFGLGAVKGVGEAAVQSIMEERKENGPFK 988

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQWV 915
             + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y    
Sbjct: 989  GIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGETFLETLMRYGNRY 1048

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKP 973
            + ++     ++F  +     D  T E    E  N   R   E+ ++G Y S HPLD Y  
Sbjct: 1049 QADKAAAVNSLFGGD--NVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPLDEYAI 1106

Query: 974  ILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +L  +      E    + + G  I +  +V S ++  ++ G+  G     + +   E  F
Sbjct: 1107 VLEHVCNTHMSELDDKSALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAEIPF 1166

Query: 1032 F 1032
            F
Sbjct: 1167 F 1167


>gi|60680202|ref|YP_210346.1| putative DNA polymerase III alpha subunit [Bacteroides fragilis NCTC
            9343]
 gi|60491636|emb|CAH06388.1| putative DNA polymerase III alpha subunit [Bacteroides fragilis NCTC
            9343]
          Length = 1264

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 366/1141 (32%), Positives = 592/1141 (51%), Gaps = 126/1141 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-------- 62
            FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F+  EF+           
Sbjct: 4    FVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGPK 63

Query: 63   -----------------------------CAAGI--------QPIIGCQLDIDMQDNLKM 85
                                         C A I        +PIIGC++ +  +    M
Sbjct: 64   GEIKDLKKRIAAIEAGEVECADKDAEIADCKAKIADAEGRLFKPIIGCEMYVARR---TM 120

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
              +   P  +   +++L    +GY  LI+LVSR +      +  R   + L++   EGLI
Sbjct: 121  DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKGYYMRP-RTDRNELEKY-HEGLI 178

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR--- 196
            + +    G + +         AE+ +  +K LFGD  Y+ +QRH+       ++ Y    
Sbjct: 179  ICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQV 238

Query: 197  --ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                 +++ +  + + L+ TN+  F++EE  EAHD L+ ++    +   +R   T   ++
Sbjct: 239  NVNKHLIEYSKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEWM 298

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298
            K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P                ++ EK
Sbjct: 299  KTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTEK 358

Query: 299  ECDD----------IQKEEENELRNKAVAGLE----VRLAQGAI-------AKGYHAQ-- 335
            +  D          +  EE  + + K + G +    ++L    +       AK ++    
Sbjct: 359  DLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDPL 418

Query: 336  --DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              + ++RL FEL+++  M F GYFLIV DFI   +   + +GPGRGS AGS  AY L IT
Sbjct: 419  SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAVAYCLQIT 478

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
             IDP+++ LLFERFLNPDR+S+PD DIDF  D R EV+R+V  KYG E+VA IIT+G++ 
Sbjct: 479  KIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTMA 538

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSVDR 510
             K A++DV R  ++P ++ DRL KL+P+  P   ++L+ AI      + A  + DP V  
Sbjct: 539  TKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEASPDPLVRD 598

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKA 566
             ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE  
Sbjct: 599  TMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIEDT 658

Query: 567  GLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GLIK DFLGLKTL++++++++ +   +G+++D+  I  +D  TY L +   T+G FQ ES
Sbjct: 659  GLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTIGTFQFES 718

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
            +GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK+T
Sbjct: 719  AGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLKDT 778

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  KNG    +
Sbjct: 779  YGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDPKV 838

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I K 
Sbjct: 839  LEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSNITDITKL 898

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADK-PFD 863
              + +   +Q + P VN   + F V  N  I + L A+KGVG    + IME   +  PF 
Sbjct: 899  MDECKMMGVQTLGPDVNESNLKFTVNRNGNIRFGLGAVKGVGEAAVQSIMEERKENGPFK 958

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQWV 915
             + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y    
Sbjct: 959  GIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGETFLETLMRYGNRY 1018

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKP 973
            + ++     ++F  +     D  T E    E  N   R   E+ ++G Y S HPLD Y  
Sbjct: 1019 QADKAAAVNSLFGGD--NVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPLDEYAI 1076

Query: 974  ILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +L  +      E    + + G  I +  +V S ++  ++ G+  G     + +   E  F
Sbjct: 1077 VLEHVCNTHMSELDDKSALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAEIPF 1136

Query: 1032 F 1032
            F
Sbjct: 1137 F 1137


>gi|284030835|ref|YP_003380766.1| DNA polymerase III subunit alpha [Kribbella flavida DSM 17836]
 gi|283810128|gb|ADB31967.1| DNA polymerase III, alpha subunit [Kribbella flavida DSM 17836]
          Length = 1182

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 367/1080 (33%), Positives = 574/1080 (53%), Gaps = 72/1080 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S SFVHL VH+ YS+L+GA  ++ +         PAIA TD   +F A EF + A  
Sbjct: 1    MASSDSFVHLHVHTEYSMLDGAARIDELFKTAQEMGMPAIATTDHGYVFGAYEFWKTAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKM--------TNQGKTPFP---TVPSIVLLVSTAEGYQRLI 113
              ++PIIG +  +    +            N G+           + LL     G   L 
Sbjct: 61   YDVKPIIGVEAYLTPHTHRSERKRVKWGDANSGRDDVSGSGAYTHMTLLAKNTSGMHNLF 120

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            ++ S +  L+      R+    LQ  G +GLI  TG  SG +         + A +    
Sbjct: 121  KM-SSLASLEGYYFKPRMDRELLQTYG-QGLIATTGCPSGEVQTRLRLGQYKEAVEAAAE 178

Query: 174  FKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            F+ +FG +  Y  L  H  G +R  +  +++LA    LPLVATN+  +   ED  AH  L
Sbjct: 179  FRDIFGAENYYCELMDHGLGIERNVQQDLLKLARELGLPLVATNDLHYTKPEDATAHAAL 238

Query: 232  MAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSF-ILQVHA 289
            + V   + +S  +R +   +  Y+K  +EM  ++ DLPEA +NT+ IA +C     +   
Sbjct: 239  LCVQSGSTLSDPNRFKFDANEFYVKTAAEMREVWKDLPEACDNTLLIAEQCDVSFTEGEG 298

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +PRF   E  +    EE+    +   GL  R   G           R++ ++E+ VI 
Sbjct: 299  RFMPRFPCPEGHN----EESWFVAEVETGLHRRYPDGV------PDHVRKQAEYEIEVIT 348

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               ++GYFL+VADFI WAK++ I VGPGRGSGAGS+ AYA+ ITD+DPL+  L+FERFLN
Sbjct: 349  SKGYAGYFLVVADFINWAKEHGIRVGPGRGSGAGSMCAYAMRITDLDPLQHGLIFERFLN 408

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+RMSMPDFDIDF   RR EVIRYV  KYG +RVA I+T+G+++AK A++D GR L  P+
Sbjct: 409  PERMSMPDFDIDFDDRRRPEVIRYVTEKYGDDRVAMIVTYGTIKAKQAIKDAGRVLDYPF 468

Query: 470  SQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +  DR+ K +P              DP H    +  ++   FR+   +D  V ++++ ++
Sbjct: 469  AMGDRITKAMPPAVMGKDVPLSGIFDPQH----KRYSEAGEFRQLYESDADVRKIVDTAR 524

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             LE L R    HAAG+++   PL +L+P+ R  +    +TQF+    E  GL+K DFLGL
Sbjct: 525  GLENLKRQWGVHAAGVIMSSEPLIELIPIMRREQDGQVITQFDYPSCETLGLVKMDFLGL 584

Query: 577  KTLTLLQKSL-DFLAQRGVKVDLSLIP--FDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            + LT++  ++ +  A RG+ +DL  +    DD  T+ LL    TLG+FQ +   MR  L 
Sbjct: 585  RNLTIMDDAVKNVEASRGITLDLDELAKTLDDKATFELLGRGDTLGVFQFDGGPMRALLR 644

Query: 634  GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQG 687
             M+PD  EDI A+ +LYRPGP+  ++   Y  RKN +++I   H      ++P+L  T G
Sbjct: 645  LMKPDNFEDISAVGALYRPGPMGANSHTNYALRKNKQQEISYPHDELAVALEPILGTTYG 704

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQVM IAQ L+GY+L +AD+LRRAMGKK +E +D +   F  G    G S     
Sbjct: 705  LIVYQEQVMAIAQQLAGYTLGKADLLRRAMGKKKREVLDAEYVGFSEGMKAGGFSDASIK 764

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++++L  F+DY FNK+H+AAY ++SY TA++K +YP E++AA +T   D+ +K+  +  
Sbjct: 765  ALWDVLVPFSDYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAAVLTSVKDDKDKMAIYLN 824

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLE 866
            + R+  I+++PP VN    +F      I + L+AI+ VG      I+ A  +K  F    
Sbjct: 825  ECRRMGIKVLPPDVNESDSNFTPVGTDIRFGLSAIRNVGVNVVAEIVAAREEKGRFTDFV 884

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF  +V     N+RV+ESL  AG+ D   ++R  ++   +     A  +++N  +   ++
Sbjct: 885  DFIDKVPLPVCNKRVIESLAKAGSFDSMNHARRAVVAVHEQAVDEAIDLKRNEAHGQFDL 944

Query: 927  FA-----HEKGTFSDKITLEKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            F+      E G  + ++T+    +E  + + +  +E+ +LG Y S HPL   + +L    
Sbjct: 945  FSMGDDDAEDGEGNRRLTVTVPEIEEWDKATKLAHERDMLGLYVSDHPLFGVEHVL---- 1000

Query: 980  IKGYEESVATI-------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              G + ++  +        G+ + +  +V + Q+K  ++G     VT  +     E   F
Sbjct: 1001 TNGTDCTIGQLLADEDRPDGSQVTIGGLVTAVQRKVNKRGDIYAIVTIEDLEGSIEVMMF 1060


>gi|297199041|ref|ZP_06916438.1| DNA polymerase III subunit alpha [Streptomyces sviceus ATCC 29083]
 gi|197716004|gb|EDY60038.1| DNA polymerase III subunit alpha [Streptomyces sviceus ATCC 29083]
          Length = 1179

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 357/1069 (33%), Positives = 567/1069 (53%), Gaps = 58/1069 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VH+ YSLL+GA  L ++ +         IA++D  NL  A +F   A  AG+ 
Sbjct: 4    PPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHTAKKAGVT 63

Query: 69   PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVS 117
            PIIG +  +  + + N +    G+ P      +          +    + G   L +L S
Sbjct: 64   PIIGIEAYVAPESRRNKRKIQWGQ-PHQKRDDVSGSGGYTHKTMWAVNSTGLHNLFKLSS 122

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              Y     ++  R+    + +  +EG++  TG  SG +           A K    ++ +
Sbjct: 123  DAYAEGWLQKWPRMDKETISQW-SEGIVASTGCPSGELQTRLRLGQYDEALKAAADYQDI 181

Query: 178  FG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG DR ++ L  H     +R    ++++     +P + TN+S +    +  AHD L+ + 
Sbjct: 182  FGKDRYFLELMDHGIEIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEATAHDALLCIQ 241

Query: 236  HSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAP-I 291
                +S  DR R     +YLK+  EM ++ S     E   NT+ +A          A  +
Sbjct: 242  TGKNLSDPDRFRFDGTGYYLKSTDEMYAVDSSDAWQEGCANTLLVAEMVDTTGMFEAKNL 301

Query: 292  LPRFIEKECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
            +P+F      DI +   E    + +   G+E R   G        +D +++ D+E++VI 
Sbjct: 302  MPKF------DIPEGYTEVTWFKEEVRRGMERRFPGGV------PEDRQKQADYEMDVII 349

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLN
Sbjct: 350  QMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLN 409

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY
Sbjct: 410  PERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPY 469

Query: 470  SQVDRLCKLIPNDP-AHPVSLQAIADDS--RFREARLA------DPSVDRLLEISQKLEG 520
            +  DRL K +P D     + L  I D S  R+ EA         +P V ++++ ++ +EG
Sbjct: 470  AMGDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRSMYENEPDVKKVIDTAKGVEG 529

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ LT
Sbjct: 530  LVRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLT 589

Query: 581  LLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  ++  + A +G+ +++  +P DD +T+ LL    TLG+FQ +   MR  L  MQPD 
Sbjct: 590  IMDDAIKMVKANKGIDLEMLALPLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRQMQPDN 649

Query: 640  IEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQE 693
             EDI A+ +LYRPGP  +++ + Y  RKNG+++I  IH  ++  L+E    T G+I+YQE
Sbjct: 650  FEDISAVSALYRPGPMGMNSHINYAERKNGRQEITPIHKELEEPLEEVLAVTYGLIVYQE 709

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QV + AQ+++GYSL EAD+LRR MGKK  +E+ K    F +GA KNG S      ++++L
Sbjct: 710  QVQKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFTIFQAGAQKNGYSDEAIQALWDVL 769

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNK+H+AAY ++SY TA++K +YP E++AA +T   D+ +K   +  + R+  
Sbjct: 770  VPFAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMK 829

Query: 814  IQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871
            I+++PP+VN    +F   GD+ I + L A++ VGT     I+ +  A   + S  D+  +
Sbjct: 830  IKVLPPNVNESEHNFAAQGDDVILFGLEAVRNVGTNVVESIIRSRKAKGKYASFPDYLDK 889

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--H 929
            V++   N+R  ESL+ AGA D  G++R  L    D++      V++       ++F    
Sbjct: 890  VEAVACNKRTTESLIKAGAFDTMGHTRKGLTAHFDSMIDNVVAVKRKEAEGQFDLFGGMG 949

Query: 930  EKGTFSDKITLE-KFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            E  +      L+ +F+ +  + +     E+ +LG Y S HPL   + +L      G  + 
Sbjct: 950  EADSSEPGFGLDVEFTTDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQL 1009

Query: 987  VAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1010 TGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|72160451|ref|YP_288108.1| DNA polymerase III subunit alpha [Thermobifida fusca YX]
 gi|71914183|gb|AAZ54085.1| DNA polymerase III, alpha subunit [Thermobifida fusca YX]
          Length = 1188

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 365/1080 (33%), Positives = 582/1080 (53%), Gaps = 76/1080 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YS+L+GA  L  + ++ A    PA+A+TD  N+F + EF Q +  +G++PI
Sbjct: 6    FVHLHVHTEYSMLDGAAKLKPLFEEAARLGMPAVAMTDHGNMFGSYEFWQTSKESGVKPI 65

Query: 71   IGCQLDIDMQDNLK----MTNQGKTPFPTVPS------------IVLLVSTAEGYQRLIE 114
            IG +  +  +            GKT                   + +    A+G + L  
Sbjct: 66   IGIEAYVAPESRFHKQRVFWGTGKTGDEAAEGGKDVSGGGRYLHLTMWARNAKGLRNLFR 125

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S +   +      R+ L  + +  +EG+++ TG  SG +         + A +     
Sbjct: 126  L-SSLASFEGYYTKPRMDLELMAQY-SEGIMVTTGCPSGGVQTRLRLGQEREAIEYAGKL 183

Query: 175  KKLFG-DRLYVNLQRHRGYDRYRESQVVQLAYTHELPL--VATNNSLFLSEEDYEAHDVL 231
            + +FG D ++V L  H G D  RE +   L    +L L  V TN+S +++E+   AHD L
Sbjct: 184  RDIFGRDSVFVELMDH-GLDIEREVRSGLLTVAKKLGLRPVVTNDSHYVTEDQAAAHDAL 242

Query: 232  MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSI--FSDLPEALENTVEIARRC--SFILQ 286
            +AV     +    R R     +YLK+  EM S+  F +  E   NT+ IA +        
Sbjct: 243  LAVGVGKNLDDPTRFRFNGTGYYLKSAEEMRSLNTFDEWLEGCRNTLWIAEQVEDGAYDD 302

Query: 287  VHAP--ILPRFI----EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            V  P  ++P+F     E +   ++KE E  + N+   G               +++ R+R
Sbjct: 303  VFRPRDLMPKFPVPEGETQASWLRKEIERCIPNRYPNG--------------PSREVRER 348

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            ++ EL++I RM F  YFL+VAD  Q+A+++ I +GPGRGS  GS+ AY L ITD+DPL  
Sbjct: 349  IEHELSIIERMGFPAYFLVVADICQYARRSGIALGPGRGSATGSMVAYVLGITDLDPLEH 408

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            SLLFERFLNP+R+SMPD D+DF + +R ++IRYV  +YG +RVAQI+TFG+++AKAA++D
Sbjct: 409  SLLFERFLNPERVSMPDIDLDFDERKRGDMIRYVTERYGEDRVAQILTFGTIKAKAAIKD 468

Query: 461  VGRALQMPYSQVDRLCKLIPNDPA---HPVSLQAIADDS--RFREAR------LADPSVD 509
              R L  PY+  D++ K  P  PA     + L A+ D+S  R+ EA        ++P V 
Sbjct: 469  ATRILGYPYALGDKITKAFP--PAVGGKEIPLSAVFDESHPRYNEAAELRQLIESNPDVR 526

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            ++ E +  LEGL R    HAAG+++   PL  ++P+++       +T F     E+ GL+
Sbjct: 527  KVYETASGLEGLTRGTGVHAAGVILSAEPLLDVIPLHKRETDGAIITGFPYPQCEEMGLL 586

Query: 570  KFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGL+ LT++  ++ +  A  G +++LS +P D+ +TY LL+   TLG+FQL+   M
Sbjct: 587  KMDFLGLRNLTVIDDAIQNIKANEGKEINLSALPLDNKKTYELLSRGDTLGVFQLDGGPM 646

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPML 682
            R  L+ M+P    DI A+++LYRPGP+  +    Y +R NG+++I  IHP     +DP+L
Sbjct: 647  RALLKRMEPKKFGDIAAVLALYRPGPMAANAHNDYADRSNGRQEITPIHPELKEALDPIL 706

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
             E+  +I+YQEQVM IAQ L+GY+L  AD+LRRAMGKK KE ++K+  +F  G    G S
Sbjct: 707  AESFHLIVYQEQVMAIAQQLAGYTLGGADLLRRAMGKKKKEALEKEYTKFSEGMLSRGFS 766

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
            K     +++++  F+ Y FNKSH A Y +ISY TA++K ++P  ++AA +T   D+ +K+
Sbjct: 767  KEAMQALWDVMLPFSGYAFNKSHTAGYGMISYWTAYLKANHPASYMAALLTSVADDKDKM 826

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-P 861
              +  + R+  I+++PP VN   + F    N I + L A++ VG      I++   +K  
Sbjct: 827  AVYLAECRKMGIRVLPPDVNESGLQFTPVGNDIRFGLGAVRNVGANVVESILKTREEKGK 886

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F S  DF S+++    N+RV+ESL+ AGA D  G+SR+ L +  +         +K   +
Sbjct: 887  FTSFVDFLSKIELTVCNKRVIESLIKAGAFDSLGHSRLDLYRHHEAAVDAVLSSKKQEAH 946

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPIL 975
               ++F         +     FS+  +   ++       E+ +LG Y S HPL   + IL
Sbjct: 947  GQFDLFGGGDEEDGGESAPLGFSINWTGEEWDRKTKLAFEREMLGLYVSSHPLAGAERIL 1006

Query: 976  RKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +       + V   R NN  +R+A ++   +++  + G++    T  +     EA FFP
Sbjct: 1007 ARASDAPLLDVVNGERRNNDEVRIAGLISKVEKRINKAGNQWAIATVEDLDASIEALFFP 1066


>gi|163791498|ref|ZP_02185904.1| DNA-directed DNA polymerase III, alpha subunit [Carnobacterium sp.
            AT7]
 gi|159873221|gb|EDP67319.1| DNA-directed DNA polymerase III, alpha subunit [Carnobacterium sp.
            AT7]
          Length = 1112

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 356/1033 (34%), Positives = 560/1033 (54%), Gaps = 56/1033 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV LQV SSYSLL+  +++  ++ K       AIA+TD N L+  ++F +      I+P
Sbjct: 2    SFVQLQVISSYSLLQSTVTIEALVLKAKERGYKAIALTDYNILYGIVDFYKMCKKHHIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G  LD+     +  T++         SI+LL   A GY+ L+ L S   LL    ++ 
Sbjct: 62   LLGLTLDVG---GIIKTDENH-------SILLLAKNAAGYESLLTLSSEKMLL---AETE 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
            R+ +  ++E  +  LI +T G  G ++     N  + A   +  ++ LF +R  Y+ +Q 
Sbjct: 109  RLTIDQIKE-HSRNLIAVTPGEKGEVEHFLLQNEKKAAAAVVEKWQALFPERQFYLGVQL 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            H+     +++       T  LP VA  +  ++   D  +  VL A+    V+ +     V
Sbjct: 168  HQNLLPIKDALTELAKETGTLP-VALQDVRYIDATDDFSTRVLRAINKGEVL-ETQHAAV 225

Query: 249  TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRF---IEKECDDI 303
              ++YL   S+    F D  L EA + T +IA      + ++  +LP+F    EK   + 
Sbjct: 226  IGEYYLPESSQAEKRFIDNGLKEAAQRTNDIANMIDVEIALNQQLLPKFPLPTEKTTTEF 285

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             KE+        + GLE R+++         + Y  RL++EL VI +M F  YFLIV D 
Sbjct: 286  LKEQ-------CLVGLEKRVSE-------PDKRYTDRLEYELTVIGKMGFEDYFLIVWDV 331

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +A K  I  G GRGS AGS+ AY L ITD+DP+ + LLFERFLN +R +MPD D+DF 
Sbjct: 332  MAYAHKVKIVTGAGRGSAAGSLVAYLLEITDVDPIEYDLLFERFLNEERYTMPDIDLDFP 391

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+++++YV+NKYG   VAQI TFG+L AK AL+DV R   +  S+     K IP+  
Sbjct: 392  DNRREDILQYVKNKYGKNHVAQIATFGTLAAKMALKDVSRVFGLSPSEASVWSKAIPS-- 449

Query: 484  AHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               ++L+ A       R     +     L E ++K+EGL RH STHAAG+VI D+PL+  
Sbjct: 450  VLGITLEKAFKQSVNLRNLVGENEKNTLLFETAKKIEGLPRHISTHAAGVVISDKPLTHY 509

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            VP+ +   SD+ +TQ+ M  +E+ GL+K DFLGLK L+++  +L  +  + G +++L  I
Sbjct: 510  VPLQKG-GSDILLTQYPMGNVEEIGLLKMDFLGLKNLSIIDNALKLIQRETGERLNLLNI 568

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P  D ET  L      +GIFQ ES+G++  L  ++P  +EDI A+ +LYRPGP++ I  +
Sbjct: 569  PMQDQETLQLFRKGDMVGIFQFESAGIKSVLRRLEPTSMEDIAAVNALYRPGPMEQIDTF 628

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK G   I   H  +  +L  T GV++YQEQVMQ+A  + GY+L +AD+LRRA+GKK 
Sbjct: 629  IKRKKGLLPIEYPHETLSEILSVTYGVMVYQEQVMQVASKMGGYTLGQADILRRAIGKKQ 688

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  +DK+++ F SGA+K G S  +A+ +++ + +FA+YGFN+SHA AY+ I+YQ A++K 
Sbjct: 689  KSVIDKERQHFTSGAAKLGYSPEVAIQVYDYIERFANYGFNRSHAVAYSFIAYQMAYLKA 748

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP  F  A +   ++N  K+K +  +A++ NI+++ P +N     F +   +I +  ++
Sbjct: 749  HYPHAFFVALLNSALNNSAKMKDYIIEAKKRNIKVLSPDINASFGGFSLVKGQILFGFSS 808

Query: 842  IKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IKG+        +     D  +  L DF  R++ K L    ++ L++ GA D F YSR  
Sbjct: 809  IKGLRRDMIDDMVTNRKNDGSYKDLIDFLKRLNKKWLKPEYIKPLIYVGAFDQFEYSRGT 868

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL S++ I    Q V  +  N         K  F+  +T+E+        + ENE+  LG
Sbjct: 869  LLASIEGI---IQSVHMSGNNSGLFELLKPKYEFASDLTIEE--------KLENEELFLG 917

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             Y SGHP + Y  +     I    E    I G   R+   + +  +  T+KG  + +VT 
Sbjct: 918  TYLSGHPTEKYDSVRPWKQIVYVNE---LIIGKTSRVIGSIKNIHKITTKKGEPMAFVTI 974

Query: 1021 SEPAKEYEANFFP 1033
            S+ + +     FP
Sbjct: 975  SDTSGDCSLTLFP 987


>gi|295839452|ref|ZP_06826385.1| DNA polymerase III, alpha subunit [Streptomyces sp. SPB74]
 gi|197698735|gb|EDY45668.1| DNA polymerase III, alpha subunit [Streptomyces sp. SPB74]
          Length = 1181

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 366/1080 (33%), Positives = 568/1080 (52%), Gaps = 76/1080 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K+P F HL VH+ YSLL+GA  L ++           IA++D  NL  A +F  +A  AG
Sbjct: 4    KTP-FTHLHVHTQYSLLDGAARLKDMFQACNEMGMTHIAMSDHGNLHGAYDFFHQAKKAG 62

Query: 67   IQPIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIEL 115
            + PIIG +  +  + + N +    G+ P      +          +  + + G   L +L
Sbjct: 63   VTPIIGIEAYVAPESRRNKRKIQWGQ-PHQKRDDVSGSGGYTHKTIWAANSTGLHNLFKL 121

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S  Y     ++  R+    + +  +EGLI  TG  SG +         + A K    ++
Sbjct: 122  SSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQPEEALKAAADYQ 180

Query: 176  KLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             +FG DR ++ L  H G D   R R+  ++++     +P + TN+S +    +  AHD L
Sbjct: 181  DIFGKDRYFLELMDH-GIDIEHRVRDG-LLEIGKKLGIPPLVTNDSHYTYAHESVAHDAL 238

Query: 232  MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVH 288
            + +     +S  DR R     +YLK   EM +I S     E   NT+ +A +        
Sbjct: 239  LCIQTGKNLSDPDRFRFDGTGYYLKTTDEMYAIDSSDAWQEGCRNTLLVAEQVDTTGMFE 298

Query: 289  A-PILPRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR-LDFEL 345
               ++P+F I +   +I   +E   R     G+E R   G         D RQR  ++E+
Sbjct: 299  KRDLMPKFDIPEGFTEITWFQEEVRR-----GMERRFPAGV-------PDDRQRQAEYEM 346

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +VI +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FE
Sbjct: 347  DVIIQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFE 406

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L
Sbjct: 407  RFLNPERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVL 466

Query: 466  QMPYSQVDRLCKLIPND-------------PAHPVSLQAIADDSRFREARLADPSVDRLL 512
              PY+  DR+ K +P D             P HP   +A       R     +P V +++
Sbjct: 467  GYPYAMGDRITKAMPADVLGKGIDLDGITNPTHPRYSEA----GEVRGMYENEPDVKKVI 522

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            + ++ +EGL R    HAAG+++   P+    P++     ++ +TQ++    E  GL+K D
Sbjct: 523  DTAKGVEGLVRQMGVHAAGVIMSSEPIIDHAPVWVRHTDNVTITQWDYPQCESLGLLKMD 582

Query: 573  FLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGL+ LT++  ++  + + +G ++DL  IP DD +TY LL    TLG+FQ +   MR  
Sbjct: 583  FLGLRNLTIMDDAVKMVKSNKGRELDLLAIPLDDPKTYELLCRGDTLGVFQFDGGPMRSL 642

Query: 632  LEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----T 685
            L  M+PD  EDI A+ +LYRPGP  +++   Y  RKNG+++I  IHP ++  LKE    T
Sbjct: 643  LRLMKPDNFEDISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEVLGLT 702

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+I+YQEQV + AQ+++GYSL EAD+LRR MGKK  +E++K    F +GA KNG S   
Sbjct: 703  YGLIVYQEQVQKAAQIVAGYSLGEADILRRVMGKKKADELEKNFVLFQAGARKNGYSDEA 762

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               ++++L  FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +
Sbjct: 763  IQALWDVLVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAAVLTSVRDDKDKSAVY 822

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFD 863
              + R+  I+++PP VN    +F   GD+ I + L A++ VG      I+ +  A   + 
Sbjct: 823  LNECRRMGIRVLPPDVNESLANFAAQGDDVILFGLTAVRNVGQNVVESIIRSRKAKGKYA 882

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            S  D+  +V++   N+R  ESL+ AGA D  G++R  L    + +      V++      
Sbjct: 883  SFPDYLDKVEAVVCNKRTTESLIKAGAFDQLGHTRKGLTAQYEPMIDNVVAVKRKEAEGQ 942

Query: 924  ENIF--------AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
             ++F          E G F   +T      E S +    E+ +LG Y S HPL   + +L
Sbjct: 943  FDLFGGMGDDDGKDEPG-FGLDVTFGDDEWEKSYL-LAQEREMLGLYVSDHPLFGLEHVL 1000

Query: 976  RKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G  +      G+   + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1001 SDKADAGIGQLTGGDFGDGAVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1060


>gi|297161306|gb|ADI11018.1| DNA polymerase III subunit alpha [Streptomyces bingchenggensis BCW-1]
          Length = 1181

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 358/1076 (33%), Positives = 557/1076 (51%), Gaps = 70/1076 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VH+ YSLL+GA  L ++ +         IA+TD  NL  A +F Q+A  AGI 
Sbjct: 4    PPFTHLHVHTQYSLLDGAARLKDMFNACQEMGMTHIAMTDHGNLHGAYDFYQQATGAGIT 63

Query: 69   PIIGCQLDIDMQDN-LKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSR 118
            PIIG +  +  +    K   Q   P      +          +  S   G   L  L S 
Sbjct: 64   PIIGIEAYVAPESRRYKRRVQWGQPHQKRDDVSGSGGYTHKTIWASNKAGLHNLFRLSSD 123

Query: 119  MYL----LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
             Y+    +   +        W     +EGLI  TG  SG +           A K    +
Sbjct: 124  AYMEGYFVKWPRMDKETIAQW-----SEGLIASTGCPSGELQTRLRLGQFDEALKAASEY 178

Query: 175  KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG DR ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIEIERRVRDGLLEVGKKLGIPPLVTNDSHYTYSREAVAHDALL 238

Query: 233  AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHA 289
             V     +S  DR R     +YLK+  EM +I S     E   NT+ +A +         
Sbjct: 239  CVQTGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCRNTLLVAEQIDATGWFEK 298

Query: 290  -PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++PRF   E       E +  + +   G+E R   G        +D +++ ++E++VI
Sbjct: 299  RDLMPRFDVPEG----FTEVSWFQEEVKRGMERRYPAGV------PEDRQKQAEYEMDVI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFL
Sbjct: 349  IQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIDHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VAQI T+G+++AK A++D  R L  P
Sbjct: 409  NPERVSMPDVDIDFDERRRGEVIRYVTEKYGADKVAQIGTYGTIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPNDP-AHPVSLQAIADDSRFREARLA--------DPSVDRLLEISQKLE 519
            Y+  DR+ K +P D     + L  I DD   R +  A        +  V ++++ ++ +E
Sbjct: 469  YAMGDRITKAMPADVLGKGIPLSGITDDKHPRYSEAAEVRGMYENEADVKKVIDTARGIE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++    +++ VP++        VTQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSETVTEHVPVFSPKNDGQVVTQWDYPTCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  + A +GV + L  +P DD +TY LL    TLG+FQ +   MR  L  M+PD
Sbjct: 589  TIMDDAVKMVRANKGVDLKLLELPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRMMKPD 648

Query: 639  CIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI A+ +LYRPGP  +++ + Y  RKN +++I  IHP ++  LKE    T G+++YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMNSHINYALRKNAQQEITPIHPELEEPLKEVLGITYGLVVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+L+GYSL +AD+LRRAMGKK KE +DK+   F  G  + G S      ++++
Sbjct: 709  EQVQKAAQVLAGYSLGQADLLRRAMGKKKKEVLDKEFVPFQKGCRERGYSDAAIQAVWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVRDDKDKSAIYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCS 870
             I+++ P+VN    +F   GD+ I + L A++ VG      I+     K  + S  D+  
Sbjct: 829  GIKVLTPNVNESEANFAAQGDDVILFGLTAVRNVGANVVEAIIRGRKSKGKYSSFPDYLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AH 929
            +V++   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F   
Sbjct: 889  KVEAVVCNKRTTESLIKAGAFDEMGHTRKGLTAHYETMIDNVVAVKRKEAEGQFDLFGGM 948

Query: 930  EKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                           VE S + ++       E+ +LG Y S HPL   + +L        
Sbjct: 949  GGDDSGGDGPGFGLDVEFSDIEWDKAYLLAQEREMLGLYVSDHPLFGIEHVLNDKA---- 1004

Query: 984  EESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + ++A + G        + +  ++   Q+K T++G+     T  + A   +  FFP
Sbjct: 1005 DAAIAQLTGGEHADGAIVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIDCMFFP 1060


>gi|320457804|dbj|BAJ68425.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp.
            infantis ATCC 15697]
          Length = 1177

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 360/1068 (33%), Positives = 564/1068 (52%), Gaps = 62/1068 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++PII
Sbjct: 1    MQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKPII 60

Query: 72   GCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            G +     +   QD  ++      Q +        I  L   AE  + L+ L+    + +
Sbjct: 61   GIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSVAN 120

Query: 124  QGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180
               + +R      + + T  +G+I  +G  SG I           A +    F+ +FG D
Sbjct: 121  LEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFGKD 180

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              ++ L  H    +      ++ +A     PL+ATN+S ++  ED +A D ++ +   + 
Sbjct: 181  NFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSGSR 240

Query: 240  VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--APILPRFI 296
            +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H     +P+F 
Sbjct: 241  LDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMPKFP 300

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E  D    E +    K   GLE R        G    D  ++ D+E  VI +M+F GY
Sbjct: 301  CPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFCGY 350

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+S+P
Sbjct: 351  FLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLP 410

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  +++ 
Sbjct: 411  DIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKVT 470

Query: 477  KLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRH 524
            K +P  PA      +SL  I D +         FRE   +DP   R+ E ++ +EGL R 
Sbjct: 471  KALP--PAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLIRQ 528

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
               HA   ++G  P++   P+    R+D  + T F     E  GL+K DFLGL  LT++ 
Sbjct: 529  TGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIH 586

Query: 584  KSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             +L + +A     +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++PD   D
Sbjct: 587  DTLKNIVANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFND 646

Query: 643  IIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVM 696
            I AL++LYRPGP  +D+   Y  RKNG +KI  IHP ++  LK    ET G+IIYQEQV 
Sbjct: 647  ISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQ 706

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
              A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  ++++L  F
Sbjct: 707  SAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPF 766

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            + Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  IQ+
Sbjct: 767  SGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQV 826

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVD 873
            + P VN    ++    + + + L AI+ VG      I+ A  + P   F +  DF  RV 
Sbjct: 827  LSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDFIRRVP 885

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
               LNRR++ESL+ AGA D    +R  L    +        +++ +     ++F+  +  
Sbjct: 886  LTALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDG 945

Query: 934  FSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIKGYEE 985
             ++      +T+      +   +   E+ +LG Y S HPL   + I   LR+M I    +
Sbjct: 946  GAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVD 1005

Query: 986  SVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T+  G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1006 RARTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSVQCMFF 1053


>gi|257064824|ref|YP_003144496.1| DNA-directed DNA polymerase III PolC [Slackia heliotrinireducens DSM
            20476]
 gi|256792477|gb|ACV23147.1| DNA-directed DNA polymerase III PolC [Slackia heliotrinireducens DSM
            20476]
          Length = 1166

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 360/1041 (34%), Positives = 565/1041 (54%), Gaps = 51/1041 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN------NLFSALEFSQKAC 63
            +FVHL  H+ YS+L+GA  +  ++ + A    PA+AITD         L  A+E  +K  
Sbjct: 2    AFVHLHNHTEYSMLDGATKIKAMVRRAADLGMPAVAITDHGVMCGVPELCDAVEAVKKET 61

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
               ++PI GC+  +   ++ ++  + K+P   +  ++LL     GY  L+ +VS  ++ D
Sbjct: 62   GVYVKPIYGCE--VYFTEDREIGTRKKSP---LYHLILLAKNNVGYHNLLHIVSESHM-D 115

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDR 181
                  R  +  L++  +EG+I  T   SG + R     +   A      F  +F  GD 
Sbjct: 116  NFFYKPRTTIDVLEKY-SEGIIGTTACMSGIVQRRLDDRNYADALAWTKRFADIFAPGD- 173

Query: 182  LYVNLQRH----RGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             YV LQ      RG    +E  +Q+ Q+A    L  +ATN+  +L+ ED  A D+++ + 
Sbjct: 174  FYVELQDQGLTSRGGLTQKEINTQLTQIAQELGLKTIATNDFHYLTREDAAAQDIMLCIG 233

Query: 236  HSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
              ++   ++R R + D  Y+K   EM     D PEA +NT+E+A +C F+      +LPR
Sbjct: 234  TGSLRDDENRMRFSNDEFYMKTEEEMREALKDFPEACDNTIEVAEKC-FVELERDSVLPR 292

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIAR 350
            F           EE   R +   GLE R      +  I+ G H     +R ++E +VI +
Sbjct: 293  FPLPP----GYTEEQLFREECEKGLERRYGPDWREIKISDGMHDVSVLERYEYEASVIVQ 348

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              F  YFLIV ++I+WAK++ I VGPGRGS AG++  YA+ ITD++PL   LLFERFL+P
Sbjct: 349  QGFPAYFLIVQEYIRWAKEHGIGVGPGRGSAAGAICTYAMGITDLEPLSNGLLFERFLSP 408

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+ MPD D+DF  +RR EVI +V+  YG + +A +ITFG LQAK A+RD  R L  PY+
Sbjct: 409  ERVEMPDIDVDFEDERRQEVIDHVREFYGADHIAGVITFGKLQAKNAVRDAARVLGHPYN 468

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
              DRLCK+I ++    +   AI ++    +    +P    +L+ +  +EG  R    HA 
Sbjct: 469  TGDRLCKVIGDELGIKLK-DAIENNPDLAKIYKEEPESREILDSAMSIEGNIRGEGVHAC 527

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
              +I   PL   VP+ RD +    +TQ++  +  + GL+K DFLGL+TL +L ++   + 
Sbjct: 528  ATIICRDPLVDHVPVKRDTKGGGMITQYDGHYTPELGLLKMDFLGLRTLGVLSRACRNVK 587

Query: 591  QR-GVKVDLSLIPFDDHETYHLL---TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             R G+ +    IP DD   Y L+   T     G+FQ+ES+        M+P    DI+A 
Sbjct: 588  DRFGITIVPDEIPIDDEGAYKLMRLETPYSMDGLFQVESALYVSLFARMKPRTFSDIVAS 647

Query: 647  VSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ++L RPGP++N  + +Y +R+ G++ +      + P+L+ET G I+YQEQ+MQI+  +SG
Sbjct: 648  IALNRPGPLENGFVDLYVDRRMGRKPVSYYDDRLKPLLEETYGTIVYQEQIMQISMAMSG 707

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            +S  +AD LR+AMGKK  E M + K+ + +GA +NG S  IA  I+    +FA Y FNKS
Sbjct: 708  FSAGKADKLRKAMGKKRIEVMMQLKDDWCNGAVENGFSLEIAERIWHDAEEFAKYAFNKS 767

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYAV+  +TA+MK HYP E++AA ++  M + +K+ K+     +  I ++PP +N+ 
Sbjct: 768  HSAAYAVLVCRTAYMKAHYPYEYMAAVLSSYMGSADKLIKYISSCTRNGIPVLPPDINSS 827

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLE 883
             ++F   +  I + LA ++GVG   A  I+ E     PF SL DF +RVD K  NR+ LE
Sbjct: 828  NLEFTPLEEGIRFGLAGVRGVGAAVAESIIAERDEGGPFTSLHDFVNRVDGKCYNRKTLE 887

Query: 884  SLVFAGALDCFGYSRMQLLQSLDN---IQKYAQWVEKNRTNKHENIF----AHEKGTFSD 936
            +LV AGA D  GY+R QL+  +D    ++  A+  +++R N   ++F      E   F +
Sbjct: 888  ALVKAGAFDSTGYTRKQLMYFIDETSLLEDVAKR-QRDRENGQVSMFDLFGDMEDSGFEE 946

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN--N 994
             I        +       E+ +L  Y S HPL  Y+  LR +  K     +A  +G+  N
Sbjct: 947  DIPAPDGVEWDKRTLLAFEKSILKIYVSDHPLSQYERSLRSIS-KFQLGDLADHKGDIKN 1005

Query: 995  IRLAAMVVSKQQKKTRKGSRI 1015
                 ++ + Q K T+KG ++
Sbjct: 1006 GVFCGLISTVQIKMTKKGKKM 1026


>gi|255007521|ref|ZP_05279647.1| DNA polymerase III alpha subunit [Bacteroides fragilis 3_1_12]
 gi|313145215|ref|ZP_07807408.1| DNA polymerase III alpha subunit [Bacteroides fragilis 3_1_12]
 gi|313133982|gb|EFR51342.1| DNA polymerase III alpha subunit [Bacteroides fragilis 3_1_12]
          Length = 1264

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 367/1141 (32%), Positives = 593/1141 (51%), Gaps = 126/1141 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-------- 62
            FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F+  EF+           
Sbjct: 4    FVHLHVHTQYSLLDGQASVSALVDKAIKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGPK 63

Query: 63   -----------------------------CAAGI--------QPIIGCQLDIDMQDNLKM 85
                                         C A I        +PIIGC++ +  +    M
Sbjct: 64   GEIKDLKKWIAAIEAGEVDCADKEAEIADCKAKIVEAEGRLFKPIIGCEMYVARR---TM 120

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
              +   P  +   +++L    +GY  LI+LVSR +      +  R   + L++   EGLI
Sbjct: 121  DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKGYYMRP-RTDRNELEKY-HEGLI 178

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR--- 196
            + +    G + +         AE+ +  +K LFGD  Y+ +QRH+       ++ Y    
Sbjct: 179  ICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQV 238

Query: 197  --ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                 +++ A  + + L+ TN+  F++EE  EAHD L+ ++    +   +R   T   ++
Sbjct: 239  NVNKHLIEYAKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEWM 298

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298
            K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P                ++ EK
Sbjct: 299  KTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTEK 358

Query: 299  ECDD----------IQKEEENELRNKAVAGLE----VRLAQGAI-------AKGYHAQ-- 335
            +  D          +  EE  + + K + G +    ++L    +       AK ++    
Sbjct: 359  DLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDPL 418

Query: 336  --DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              + ++RL FEL+++  M F GYFLIV DFI   +   + +GPGRGS AGS  AY L IT
Sbjct: 419  SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAVAYCLQIT 478

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
             IDP+++ LLFERFLNPDR+S+PD DIDF  D R EV+R+V  KYG E+VA IIT+G++ 
Sbjct: 479  KIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTMA 538

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSVDR 510
             K A++DV R  ++P ++ DRL KL+P+  P   ++L+ AI      + A  + DP V  
Sbjct: 539  TKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEASPDPLVRD 598

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKA 566
             ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE  
Sbjct: 599  TMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIEDT 658

Query: 567  GLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GLIK DFLGLKTL++++++++ +   +G+++D+  I  +D  TY L +   T+G FQ ES
Sbjct: 659  GLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTIGTFQFES 718

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
            +GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK+T
Sbjct: 719  AGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLKDT 778

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  KNG    +
Sbjct: 779  YGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDPKV 838

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I K 
Sbjct: 839  LEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSNITDITKL 898

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADK-PFD 863
              + +   +Q + P VN   + F    N  I + L A+KGVG    + IME   +  PF 
Sbjct: 899  MDECKAMGVQTLGPDVNESNLKFTANRNGNIRFGLGAVKGVGEAAVQSIMEERRENGPFK 958

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQWV 915
             + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y    
Sbjct: 959  GIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNAKGETFLETLMRYGNRY 1018

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKP 973
            + ++     ++F  +     D  T E    E  N   R   E+ ++G Y S HPLD Y  
Sbjct: 1019 QADKAAAVNSLFGGD--NVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPLDEYAI 1076

Query: 974  ILRKM-GIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +L  +   +  E +  A + G  I +  +V S ++  ++ G+  G     + +   E  F
Sbjct: 1077 VLEHVCNTRMIELDDKAALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAEIPF 1136

Query: 1032 F 1032
            F
Sbjct: 1137 F 1137


>gi|329961868|ref|ZP_08299882.1| DNA polymerase III, alpha subunit [Bacteroides fluxus YIT 12057]
 gi|328531308|gb|EGF58152.1| DNA polymerase III, alpha subunit [Bacteroides fluxus YIT 12057]
          Length = 1273

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 373/1143 (32%), Positives = 591/1143 (51%), Gaps = 129/1143 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+           
Sbjct: 12   FVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 71

Query: 61   ---------------------------KACAAGI--------QPIIGCQLDIDMQDNLKM 85
                                         C A I        +P+IGC++ +  +    M
Sbjct: 72   GEIKDLKKRIAGIESGEIECEDREAEIAGCRAKIAEAENKLFKPVIGCEMYVARR---TM 128

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
              +   P  +   +++L    +GY  LI+LVSR +      +  R   + L++   EGLI
Sbjct: 129  DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKGYYMRP-RTDRNELEKY-HEGLI 186

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY---- 195
            + +    G + +    +  + AE+ +  +K LFGD  Y+ LQRH+       ++ Y    
Sbjct: 187  VCSACIGGEVPKKIINDRLEEAEEAVRWYKNLFGDDYYLELQRHKATVQRANHEAYPLQQ 246

Query: 196  -RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
               +++++ A  + + ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   ++
Sbjct: 247  KANAKLLEYARKYNIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEWM 306

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI----------------EK 298
            K ++EM ++F D+PEAL NT+EI  +  +    HAPI+P F                 EK
Sbjct: 307  KTKAEMNALFEDVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEEFGTEEEYRAKYSEK 366

Query: 299  ECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH--- 333
            +  D          +  EE  + + K + G E             +LA     + Y    
Sbjct: 367  DLFDEFTQDENGKVVLDEEAAKAKIKRLGGYEKLYRIKLEADYLAKLAFDGAKRLYGDPL 426

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392
            + + ++RL FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS  AY L I
Sbjct: 427  SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSAVAYCLGI 486

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V +KYG E+VA IIT+G++
Sbjct: 487  TKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTDKYGQEKVAHIITYGTM 546

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSVD 509
              K A++DV R  ++P S+ DRL KL+P+  P   ++L  AIA     + A  + DP V 
Sbjct: 547  ATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEASPDPLVR 606

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEK 565
              L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE 
Sbjct: 607  DTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIED 666

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GLIK DFLGLKTL++++++++ +   RG+K+D+  I   D  TY L     T+G FQ E
Sbjct: 667  TGLIKMDFLGLKTLSIIKEAVENVRLHRGLKLDIDKISITDPATYKLYCDGRTIGTFQFE 726

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+++  LK+
Sbjct: 727  SAGMQKYLRELQPGTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPIMEKYLKD 786

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI+G  KNG    
Sbjct: 787  TYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQKNGHDPK 846

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I K
Sbjct: 847  VLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLSNITDITK 906

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPF 862
               + +   I  + P VN   + F V  +  I + L A+KGVG    + IME    + P+
Sbjct: 907  LMDECKAMGINTLGPDVNESNLKFTVNKEGNIRFGLGAVKGVGEGAVQSIMEEREKNGPY 966

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQW 914
              + DF  RV+    N++ +E L  AG  D F    R Q           ++ + +Y   
Sbjct: 967  KGIFDFVQRVNLNACNKKNIECLALAGGFDSFPELKREQYFAVNSKNEVFIETLVRYGNR 1026

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYK 972
             + ++     ++F  E     D  T E    E  S   R   E+ ++G Y S HPLD Y 
Sbjct: 1027 YQADQAAAANSLFGGE--NVVDIATPEILPAERWSDLDRLNRERDLVGIYLSAHPLDEYA 1084

Query: 973  PILRKMG---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
             +L  +    +   E+  A + G  I +  +V S ++  ++ G+  G     + +   E 
Sbjct: 1085 VVLEHVCNTRMSEIEDKQALV-GREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAEF 1143

Query: 1030 NFF 1032
             FF
Sbjct: 1144 PFF 1146


>gi|182439233|ref|YP_001826952.1| DNA polymerase III subunit alpha [Streptomyces griseus subsp. griseus
            NBRC 13350]
 gi|178467749|dbj|BAG22269.1| putative DNA polymerase III alpha subunit [Streptomyces griseus
            subsp. griseus NBRC 13350]
          Length = 1178

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 353/1075 (32%), Positives = 558/1075 (51%), Gaps = 71/1075 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VH+ YSLL+GA  L ++ +         IA+TD  NL  A +F   A  A + 
Sbjct: 4    PPFTHLHVHTQYSLLDGAARLKDMFEAANEMGMTHIAMTDHGNLHGAYDFFHSAKKADVT 63

Query: 69   PIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSR 118
            PIIG +  +  +    K   Q   P      +          +  S   G   L  L S 
Sbjct: 64   PIIGIEAYVAPESRKHKRKVQWGQPHQKRDDVSGSGGYTHKTIWASNKTGLHNLFRLSSD 123

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             Y     ++  R+    + +  +EGLI  TG  SG +           A +    +K +F
Sbjct: 124  AYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDYKDIF 182

Query: 179  GD-RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            G+ R ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+ +  
Sbjct: 183  GEGRYFLELMDHGIEIERRVRDGLLEIGKKLNIPPLVTNDSHYTYAHEATAHDALLCIQT 242

Query: 237  STVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAP-IL 292
               +S  DR R     +YLK   EM ++ S     E   NT+ +A++        A  ++
Sbjct: 243  GKNLSDPDRFRFDGTGYYLKTTDEMYAVDSSDAWQEGCANTLLVAQQIDTTGMFEAKNLM 302

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P+F   E  D    E    + +   G+  R   G         D ++++++E+++I +M 
Sbjct: 303  PKF---EIPD-GFTEVTWFQEEVRVGMARRFPNGV------PDDRQKQVEYEMDIIIQMG 352

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+R
Sbjct: 353  FPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPER 412

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+  
Sbjct: 413  VSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAMG 472

Query: 473  DRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            DRL K +P              DP HP   +A       R    ++P V ++++ ++ +E
Sbjct: 473  DRLTKAMPADVLGKGIDLNGITDPKHPRYSEA----GEIRGMYESEPDVKKVIDTAKGVE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  + + +G+ +++  +P DD +TY LL    TLG+FQ +   MR  L  MQPD
Sbjct: 589  TIMDDAIKMVKSNKGIDLEMLALPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQPD 648

Query: 639  CIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI A+ +LYRPGP  +++   Y  RKNG+++I  IHP ++  LKE    T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMNSHTNYAERKNGRQEITPIHPELEEPLKEVLGLTYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F  GA + G S     +++++
Sbjct: 709  EQVQKAAQIVAGYSLGEADILRRVMGKKKPEELAKNFVLFEKGAKEKGFSDAAIKSLWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870
             I+++PP+VN    +F   GD+ I + L AI+ VG      I+ +  A   + +  DF  
Sbjct: 829  GIKVLPPNVNESLSNFAAQGDDVILFGLTAIRNVGQNVVDSIIRSRKAKGKYSTFPDFLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +V++   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F   
Sbjct: 889  KVEAVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGGG 948

Query: 931  KGTFSDKITLEKFSVENSSVRFE------NEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                          VE S + +E       E+ +LG Y S HPL   + +L        +
Sbjct: 949  --EEESGEPGFGLDVEFSDIEWEKAYLLAQEREMLGLYVSDHPLFGLEHVLSDKA----D 1002

Query: 985  ESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             S++ + G +      + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1003 SSISQLMGGDYGDGAIVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1057


>gi|298483654|ref|ZP_07001829.1| DNA polymerase III, alpha subunit [Bacteroides sp. D22]
 gi|298270224|gb|EFI11810.1| DNA polymerase III, alpha subunit [Bacteroides sp. D22]
          Length = 1268

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 377/1145 (32%), Positives = 594/1145 (51%), Gaps = 132/1145 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+           
Sbjct: 4    FVHLHVHTQYSLLDGQASVARLVDKAMQNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63

Query: 61   ---------------------------KACAAGI--------QPIIGCQLDIDMQD-NLK 84
                                        AC A I        +P+IGC++ +  +  +LK
Sbjct: 64   GEVKDLKKRIAGIEAGTIECADKEAEIAACKAKIVEAENKLFKPVIGCEMYVARRTMDLK 123

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
               +GK P  +   +++L    +GY  LI+LVS  +      +  R   S L++   EGL
Sbjct: 124  ---EGK-PDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR-- 196
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+       ++ Y   
Sbjct: 178  IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237

Query: 197  ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A    + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKYLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P                +F E
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357

Query: 298  KECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH-- 333
            K+  D          +  EE+ + + K + G +             +LA     + Y   
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
             +++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LSEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+  P   ++L+ AI      + A  + DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R V+VD+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDICDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861
            K   + +   IQ + P VN   + F V  D  I + L A+KGVG      IME  S + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVHSIMEERSKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEK----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
              + ++     ++F  E      T      +E++S  +   R   E+ ++G Y S HPLD
Sbjct: 1018 RYQADKAAAFNSLFGGENVIDVATPEIPQGVERWSDLD---RLNRERDLVGIYLSAHPLD 1074

Query: 970  VYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             +  +L  +        E  A + G  I +  +V S ++  ++ G+  G     + +   
Sbjct: 1075 EFSIVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGST 1134

Query: 1028 EANFF 1032
            E  F+
Sbjct: 1135 EIPFW 1139


>gi|237714902|ref|ZP_04545383.1| DNA polymerase III alpha subunit [Bacteroides sp. D1]
 gi|262406830|ref|ZP_06083379.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229445227|gb|EEO51018.1| DNA polymerase III alpha subunit [Bacteroides sp. D1]
 gi|262355533|gb|EEZ04624.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|295084710|emb|CBK66233.1| DNA polymerase III, alpha subunit [Bacteroides xylanisolvens XB1A]
          Length = 1268

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 375/1142 (32%), Positives = 592/1142 (51%), Gaps = 126/1142 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+           
Sbjct: 4    FVHLHVHTQYSLLDGQASVARLVDKAMQNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63

Query: 61   ---------------------------KACAAGI--------QPIIGCQLDIDMQD-NLK 84
                                        AC A I        +P+IGC++ +  +  +LK
Sbjct: 64   GEVKDLKKRIAGIEAGTIECADKEAEIAACKAKIVEAENKLFKPVIGCEMYVARRTMDLK 123

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
               +GK P  +   +++L    +GY  LI+LVS  +      +  R   S L++   EGL
Sbjct: 124  ---EGK-PDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR-- 196
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+       ++ Y   
Sbjct: 178  IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237

Query: 197  ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A    + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKYLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P                +F E
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357

Query: 298  KECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH-- 333
            K+  D          +  EE+ + + K + G +             +LA     + Y   
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
             +++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LSEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+  P   ++L+ AI      + A  + DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R V+VD+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDICDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861
            K   + +   IQ + P VN   + F V  D  I + L A+KGVG      IME  S + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVHSIMEERSKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-RFENEQRVLGFYFSGHPLDVYK 972
              + ++     ++F  E         + + +   S + R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQADKAAAFNSLFGGENVIDVATPEIPQGAERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077

Query: 973  PILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +        E  A + G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|153808691|ref|ZP_01961359.1| hypothetical protein BACCAC_02990 [Bacteroides caccae ATCC 43185]
 gi|149128517|gb|EDM19735.1| hypothetical protein BACCAC_02990 [Bacteroides caccae ATCC 43185]
          Length = 1268

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 373/1145 (32%), Positives = 596/1145 (52%), Gaps = 132/1145 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+           
Sbjct: 4    FVHLHVHTQYSLLDGQASVARLVDKAMQNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63

Query: 61   ---------------------------KACAAGI--------QPIIGCQLDIDMQD-NLK 84
                                        AC A I        +PIIGC++ +  +  +LK
Sbjct: 64   GEIKDLKKRLVGIEAGSIECEDKEAEVAACKAKIVEAENKLFKPIIGCEMYVARRTMDLK 123

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
               Q ++ +     +++L     GY  LI+LVS  +      +  R   S L++   EGL
Sbjct: 124  EGKQDQSGY----HLIVLAKNETGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR-- 196
            ++ +    G I +    +    AE+ +  +K LFGD  Y+ +QRH+       ++ Y   
Sbjct: 178  MVCSACLGGEIPKRITNDQFAEAEEAIQWYKNLFGDDFYLEMQRHKATVPRANHECYPLQ 237

Query: 197  ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ +    + LV TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VKVNKYLMEYSKKFNVKLVCTNDVHFVDEENAEAHDRLICLSTGKDMDDPTRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297
            +K R EM  +F+D+PEAL NT+E+  +  +    HAPI+P                +F E
Sbjct: 298  MKTREEMNELFADVPEALSNTLELLDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRQKFTE 357

Query: 298  KECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH-- 333
            K+  D          +  EE+ + + K + G +             +LA     + Y   
Sbjct: 358  KDLYDEFTQDEHGNVVLSEEDGKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
              ++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+  P   ++L+ AI      + A  + DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R +++D+  I  +D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRSLEIDVDQIDINDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861
            K   + +   IQ + P VN   + F V  D  I + L A+KGVG    + IME    + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVQSIMEERKKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q   +       L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAANSKGELFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEK----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
              + ++     ++F  E      T      +E++S  +   R   E+ ++G Y S HPLD
Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLD---RLNRERDLVGIYLSAHPLD 1074

Query: 970  VYKPILRKM-GIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             +  +L  +   +  E E  A + G  I +  +V S ++  ++ G+  G     + +   
Sbjct: 1075 EFSIVLEHVCNTRMSELEDKAALAGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGST 1134

Query: 1028 EANFF 1032
            E  F+
Sbjct: 1135 EIPFW 1139


>gi|262341080|ref|YP_003283935.1| DNA polymerase III subunit alpha [Blattabacterium sp. (Blattella
            germanica) str. Bge]
 gi|262272417|gb|ACY40325.1| DNA polymerase III subunit alpha [Blattabacterium sp. (Blattella
            germanica) str. Bge]
          Length = 1434

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 349/1013 (34%), Positives = 546/1013 (53%), Gaps = 76/1013 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            + H+  H+ +S+L   + + +++D+      PA+ ITD  NL  +  F     +      
Sbjct: 253  YSHIHNHTYFSILYSTVDIRSLVDRAIHFNMPAVGITDYGNLMGSFHFLNAIHSINKKNY 312

Query: 67   ----IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                I+ I+GC+  + + DN       K         V L    +GY  L +L S  +  
Sbjct: 313  PKKLIKGIVGCE--VFLSDNYLQKKFTKDEPDKRYQQVFLSKNKKGYHNLAKLCSLGFTE 370

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                   RI    +++   E LI LTG  +  I         + AEK  L +K+LFGD  
Sbjct: 371  GFYAGIPRIGKKLIEKY-KENLIALTGDLNAEIPYTILNYGERKAEKVFLWWKELFGDDF 429

Query: 183  YVNLQRHRGYDRYRESQVVQLAYT--HELPLVATNNSLFLSEEDYEAHDVLMAVAH---- 236
            Y+ L RH G +       + L ++  + +  +  NN+ +L + +  AHD+L+ V +    
Sbjct: 430  YIELLRH-GLEEENHVNDILLKFSKKYHVKYIVQNNTFYLDKNEANAHDILLCVKNGEKQ 488

Query: 237  STVVSQKDRPRVT-PDH--YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            ST + +    R   P+H  Y KN  EM  IFSDLPE+ +   E+  +          +LP
Sbjct: 489  STPIGKGKGYRFGFPNHEFYFKNSEEMKKIFSDLPESFDFLEELVNKIESYHLSRKILLP 548

Query: 294  RF-----IEKECDDI---QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            +F      E   D I    + E   L+     G + R            ++ ++R+ FEL
Sbjct: 549  KFQIPRSFEDPMDKIDGGNRGENRFLKRITYEGAKERYKN-------MTKEIQERILFEL 601

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
              I R+ + GYFLIV +FIQ A+K NI +GPGRGS AGSV AY + IT+IDP+++ LLFE
Sbjct: 602  KTIERIGYPGYFLIVHNFIQQARKMNISIGPGRGSVAGSVVAYCIGITNIDPIKYHLLFE 661

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+S+PD DIDF    RD++I +V  KYG  +VAQIIT+ ++ AK+++RD GR L
Sbjct: 662  RFLNPNRISLPDIDIDFDDRGRDKIIEWVVQKYGKNQVAQIITYATMGAKSSIRDTGRVL 721

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDS---------------RFREARLADPSVD- 509
             +   + DRL K+IPN     +SL+ I  ++               + R+  +   S++ 
Sbjct: 722  DLSLKETDRLAKMIPN----MLSLKTILSENCSIEKIRKEDTNNIQKLRKIAINKDSLEG 777

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            ++L+ ++ LEG  R    HA GI+I    + + +P+     SDL +TQF+   +E AGL+
Sbjct: 778  KVLQQAKILEGTIRSTGIHACGIIISPYNIKEYIPVSVSKESDLLLTQFDNHVVEHAGLL 837

Query: 570  KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGLKTLT+++ +++ +  +R    +LS  P +D +TY L     T+ +FQ ES GM
Sbjct: 838  KMDFLGLKTLTIIKDAVNLIKKKRKNNTELSF-PLEDEKTYCLFQKGETIAVFQYESPGM 896

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            ++ L  ++PD  +D+IA+ +LYRPGP+  I  + +RK+GKE I    P ++  LKET G+
Sbjct: 897  QKYLRQLKPDKFDDLIAMTALYRPGPLQYIPNFISRKHGKEAITYDLPEMEEFLKETYGI 956

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
             IYQEQVM IAQ ++ +S  +AD+LR AMGKK KE ++  + +FI  A K G SK I   
Sbjct: 957  TIYQEQVMLIAQKIADFSKGDADLLRIAMGKKQKEVLNTMRNQFIDSAMKKGYSKNILEK 1016

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            I++    F+ Y FNKSHA  YA I++QTA++K H+P E++A+ ++  M N+ ++  F ++
Sbjct: 1017 IWKDWEYFSCYAFNKSHATCYAYIAFQTAYLKAHFPYEYMASVLSNNMHNIRQLTFFIEE 1076

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLE 866
             R+ NI ++ P +N     F+V D NRI + L  IKGVG    + I+ E   + P+ S+ 
Sbjct: 1077 CRKMNISVIHPDINESDSFFEVTDSNRIRFGLTGIKGVGENAVKIILQEREKNGPYTSIL 1136

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL--------LQSLDNIQKYAQWVEKN 918
            D   R+D + +N++ LESL+ +G+LDCF   R Q         L +L+ I ++    +K 
Sbjct: 1137 DLVKRIDLRIVNKKTLESLILSGSLDCFHIHREQYFHIENDEKLNTLEKIIRFGSKFQKA 1196

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            +    E           D+  +    + ++  +   E+ VLG Y S HPLD Y
Sbjct: 1197 KNKSTE--------MKMDQPVIMGCDLWSNVYKLSKEKEVLGVYASAHPLDDY 1241


>gi|318057575|ref|ZP_07976298.1| DNA polymerase III subunit alpha [Streptomyces sp. SA3_actG]
 gi|318078654|ref|ZP_07985986.1| DNA polymerase III subunit alpha [Streptomyces sp. SA3_actF]
          Length = 1181

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 363/1079 (33%), Positives = 567/1079 (52%), Gaps = 74/1079 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K+P F HL VH+ YSLL+GA  L ++           IA++D  NL  A +F  +A  AG
Sbjct: 4    KTP-FTHLHVHTQYSLLDGAARLKDMFQACNEMGMTHIAMSDHGNLHGAYDFFHQAKKAG 62

Query: 67   IQPIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIEL 115
            + PIIG +  +  + + N +    G+ P      +          +  + + G   L +L
Sbjct: 63   VTPIIGIEAYVAPESRRNKRKIQWGQ-PHQKRDDVSGSGGYTHKTIWAANSTGLHNLFKL 121

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S  Y     ++  R+    + +  +EGLI  TG  SG +         + A K    ++
Sbjct: 122  SSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQPEEALKAAADYQ 180

Query: 176  KLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             +FG DR ++ L  H G D   R R+  ++++     +P + TN+S +    +  AHD L
Sbjct: 181  DIFGKDRYFLELMDH-GIDIEHRVRDG-LLEIGKKLGIPPLVTNDSHYTYAHESVAHDAL 238

Query: 232  MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVH 288
            + +     +S  DR R     +YLK   EM +I S     E   NT+ +A +        
Sbjct: 239  LCIQTGKNLSDPDRFRFDGTGYYLKTTDEMYAIDSSDAWQEGCRNTLLVAEQIDTTGMFE 298

Query: 289  A-PILPRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               ++P+F I     +I   +E   R     G+E R   G         D +++ ++E++
Sbjct: 299  KRDLMPKFEIPDGFTEITWFQEEVRR-----GMERRYPAGV------PDDRQKQAEYEMD 347

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FER
Sbjct: 348  VIIQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFER 407

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L 
Sbjct: 408  FLNPERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLG 467

Query: 467  MPYSQVDRLCKLIPND-------------PAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             PY+  DR+ K +P D             P HP   +A       R     +P V ++++
Sbjct: 468  YPYAMGDRITKAMPADVLGKGIDLDGITNPTHPRYSEA----GEVRGMYENEPDVKKVID 523

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             ++ +EGL R    HAAG+++   P+    P++     ++ +TQ++    E  GL+K DF
Sbjct: 524  TAKGVEGLVRQMGVHAAGVIMSSEPIIDHAPVWVRHTDNVTITQWDYPQCESLGLLKMDF 583

Query: 574  LGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL+ LT++  ++  + + +G ++DL  IP DD +TY LL    TLG+FQ +   MR  L
Sbjct: 584  LGLRNLTIMDDAVKMVKSNKGRELDLLAIPLDDPKTYDLLCRGDTLGVFQFDGGPMRSLL 643

Query: 633  EGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQ 686
              M+PD  EDI A+ +LYRPGP  +++   Y  RKNG+++I  IHP ++  LKE    T 
Sbjct: 644  RLMKPDNFEDISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEVLGLTY 703

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+I+YQEQV + AQ+++GYSL EAD+LRR MGKK  +E++K    F +GA KNG S    
Sbjct: 704  GLIVYQEQVQKAAQIVAGYSLGEADILRRVMGKKKADELEKNFVLFQAGARKNGYSDEAI 763

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              ++++L  FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   + 
Sbjct: 764  QALWDVLVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAAVLTSVRDDKDKSAVYL 823

Query: 807  QDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDS 864
             + R+  I+++PP VN    +F   GD+ I + L A++ VG      I+ +  A   + S
Sbjct: 824  NECRRMGIRVLPPDVNESLANFAAQGDDVILFGLTAVRNVGQNVVDSIIRSRKAKGKYAS 883

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              D+  +V++   N+R  ESL+ AGA D  G++R  L    + +      V++       
Sbjct: 884  FPDYLDKVEAVVCNKRTTESLIKAGAFDQLGHTRKGLTAQYEPMIDNVVAVKRKEAEGQF 943

Query: 925  NIF--------AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            ++F          E G F   +T      E S +    E+ +LG Y S HPL   + +L 
Sbjct: 944  DLFGGMGDDDGKDEPG-FGLDVTFGDDEWEKSYL-LAQEREMLGLYVSDHPLFGLEHVLS 1001

Query: 977  KMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G  +      G+   + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1002 DKADAGIGQLTGGDFGDGAVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1060


>gi|290961179|ref|YP_003492361.1| DNA polymerase III subunit alpha [Streptomyces scabiei 87.22]
 gi|260650705|emb|CBG73821.1| DNA polymerase III alpha chain [Streptomyces scabiei 87.22]
          Length = 1179

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 367/1075 (34%), Positives = 568/1075 (52%), Gaps = 70/1075 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VH+ YSLL+GA  L ++ D         IA++D  NL  A +F   A  AG+ 
Sbjct: 4    PPFTHLHVHTQYSLLDGAARLKDMFDACNEMGMTHIAMSDHGNLHGAYDFFHTAKKAGVT 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY-QRLIELVSRMYLLDQGK- 126
            PIIG +  +  +      N+ K  +         VS + GY  + I   +R  L +  K 
Sbjct: 64   PIIGIEAYVAPESR---RNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANRTGLHNLFKL 120

Query: 127  QSVRICLSWLQEI----------GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
             S      WLQ+            +EGLI  TG  SG +           A K    ++ 
Sbjct: 121  SSDAYAEGWLQKWPRMDKETISQWSEGLIASTGCPSGELQTRLRLGQFDEAVKAASEYQD 180

Query: 177  LFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +FG DR ++ L  H G D   R RE  ++++     +P + TN+S +    +  AHD L+
Sbjct: 181  IFGKDRYFLELMDH-GIDIEHRVRED-LLRVGKKLGIPPLVTNDSHYTYAHEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHA 289
             +     +S  DR +     +YLK+  EM ++ S     E   NT+ +A +        A
Sbjct: 239  CIQTGKNLSDPDRFKFDGTGYYLKSTEEMYAVDSSDAWQEGCANTLLVAEQIDTSGMFEA 298

Query: 290  -PILPRFIEKECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
              ++P+F      DI +   E    R + + G+  R   G         D  +++++E++
Sbjct: 299  RNLMPKF------DIPEGFTEVTWFREETMRGMHRRFPDGI------PDDRMKQVEYEMD 346

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
             I  M F GYFL+VADFI WAKK  I VGPGRGS AGS+ AYA+ ITD+DP+   L+FER
Sbjct: 347  TIISMGFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFER 406

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L 
Sbjct: 407  FLNPERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLG 466

Query: 467  MPYSQVDRLCKLIPNDP-AHPVSLQAIADDS--RFREARLA------DPSVDRLLEISQK 517
             PY+  DRL K +P D     + L  I D S  R+ EA         +P V ++++ ++ 
Sbjct: 467  YPYAMGDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRSMYENEPDVKKVIDTAKG 526

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EGL R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+
Sbjct: 527  VEGLVRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLR 586

Query: 578  TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT++  ++  + A +G+ +++  +P DD +T+ LL    TLG+FQ +   MR  L  MQ
Sbjct: 587  NLTIMDDAIKMVKANKGIDLEMLALPLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRQMQ 646

Query: 637  PDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVII 690
            PD  EDI A+ +LYRPGP  +++ + Y  RKN +++I  IH  ++  L+E    T G+I+
Sbjct: 647  PDNFEDISAVSALYRPGPMGMNSHINYAERKNKRQEITPIHKELEEPLEEVLAVTYGLIV 706

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F +GA +NG S      ++
Sbjct: 707  YQEQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFTIFQAGAKRNGYSDEAIQALW 766

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            ++L  FA Y FNK+H+AAY ++SY TA++K +YP E++AA +T   D+ +K   +  + R
Sbjct: 767  DVLVPFAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECR 826

Query: 811  QFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDF 868
            +  I+++PP+VN    +F   GD+ I + L A++ VGT     I+ +  A   + S  D+
Sbjct: 827  RMKIKVLPPNVNESEHNFAAQGDDVILFGLEAVRNVGTNVVESIIRSRKAKGKYASFPDY 886

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              +V++   N+R  ESL+ AGA D  G++R  L    D++      V++       ++F 
Sbjct: 887  LDKVEAVACNKRTTESLIKAGAFDTMGHTRKGLTAHFDSMIDNVVAVKRKEAEGQFDLFG 946

Query: 929  HEKGTFSDKITLEKFS--VENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGI 980
               G   ++ +   F   VE ++  +E       E+ +LG Y S HPL   + +L     
Sbjct: 947  ---GMGEEESSEPGFGLDVEFTTDEWEKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKAD 1003

Query: 981  KGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G  +        G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1004 AGIAQLTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|326779885|ref|ZP_08239150.1| DNA polymerase III, alpha subunit [Streptomyces cf. griseus
            XylebKG-1]
 gi|326660218|gb|EGE45064.1| DNA polymerase III, alpha subunit [Streptomyces cf. griseus
            XylebKG-1]
          Length = 1178

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 352/1075 (32%), Positives = 558/1075 (51%), Gaps = 71/1075 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VH+ YSLL+GA  L ++ +         IA+TD  NL  A +F   A  A + 
Sbjct: 4    PPFTHLHVHTQYSLLDGAARLKDMFEAANEMGMTHIAMTDHGNLHGAYDFFHSAKKADVT 63

Query: 69   PIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSR 118
            PIIG +  +  +    K   Q   P      +          +  S   G   L  L S 
Sbjct: 64   PIIGIEAYVAPESRKHKRKVQWGQPHQKRDDVSGSGGYTHKTIWASNKTGLHNLFRLSSD 123

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             Y     ++  R+    + +  +EGLI  TG  SG +           A +    +K +F
Sbjct: 124  AYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDYKDIF 182

Query: 179  GD-RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            G+ + ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+ +  
Sbjct: 183  GEGKYFLELMDHGIEIERRVRDGLLEIGKKLNIPPLVTNDSHYTYAHEATAHDALLCIQT 242

Query: 237  STVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAP-IL 292
               +S  DR R     +YLK   EM ++ S     E   NT+ +A++        A  ++
Sbjct: 243  GKNLSDPDRFRFDGTGYYLKTTDEMYAVDSSDAWQEGCANTLLVAQQIDTTGMFEAKNLM 302

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P+F   E  D    E    + +   G+  R   G         D ++++++E+++I +M 
Sbjct: 303  PKF---EIPD-GFTEVTWFQEEVRVGMARRFPNGV------PDDRQKQVEYEMDIIIQMG 352

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+R
Sbjct: 353  FPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPER 412

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+  
Sbjct: 413  VSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAMG 472

Query: 473  DRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            DRL K +P              DP HP   +A       R    ++P V ++++ ++ +E
Sbjct: 473  DRLTKAMPADVLGKGIDLNGITDPKHPRYSEA----GEIRGMYESEPDVKKVIDTAKGVE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  + + +G+ +++  +P DD +TY LL    TLG+FQ +   MR  L  MQPD
Sbjct: 589  TIMDDAIKMVKSNKGIDLEMLALPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQPD 648

Query: 639  CIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI A+ +LYRPGP  +++   Y  RKNG+++I  IHP ++  LKE    T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMNSHTNYAERKNGRQEITPIHPELEEPLKEVLGLTYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F  GA + G S     +++++
Sbjct: 709  EQVQKAAQIVAGYSLGEADILRRVMGKKKPEELAKNFVLFEKGAKEKGFSDAAIKSLWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870
             I+++PP+VN    +F   GD+ I + L AI+ VG      I+ +  A   + +  DF  
Sbjct: 829  GIKVLPPNVNESLSNFAAQGDDVILFGLTAIRNVGQNVVDSIIRSRKAKGKYSTFPDFLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +V++   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F   
Sbjct: 889  KVEAVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGGG 948

Query: 931  KGTFSDKITLEKFSVENSSVRFE------NEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                          VE S + +E       E+ +LG Y S HPL   + +L        +
Sbjct: 949  --EEESGEPGFGLDVEFSDIEWEKAYLLAQEREMLGLYVSDHPLFGLEHVLSDKA----D 1002

Query: 985  ESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             S++ + G +      + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1003 SSISQLMGGDYGDGAIVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1057


>gi|294647200|ref|ZP_06724799.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD CC
            2a]
 gi|294809189|ref|ZP_06767905.1| putative DNA polymerase III subunit alpha [Bacteroides xylanisolvens
            SD CC 1b]
 gi|292637487|gb|EFF55906.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD CC
            2a]
 gi|294443583|gb|EFG12334.1| putative DNA polymerase III subunit alpha [Bacteroides xylanisolvens
            SD CC 1b]
          Length = 1268

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 376/1145 (32%), Positives = 593/1145 (51%), Gaps = 132/1145 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+           
Sbjct: 4    FVHLHVHTQYSLLDGQASVARLVDKAMQNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63

Query: 61   ---------------------------KACAAGI--------QPIIGCQLDIDMQD-NLK 84
                                         C A I        +P+IGC++ +  +  +LK
Sbjct: 64   GEVKDLKKRIAGIEAGTIECADKEAEIATCKAKIVEAENKLFKPVIGCEMYVARRTMDLK 123

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
               +GK P  +   +++L    +GY  LI+LVS  +      +  R   S L++   EGL
Sbjct: 124  ---EGK-PDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR-- 196
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+       ++ Y   
Sbjct: 178  IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237

Query: 197  ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A    + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKYLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P                +F E
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357

Query: 298  KECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH-- 333
            K+  D          +  EE+ + + K + G +             +LA     + Y   
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
             +++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LSEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+  P   ++L+ AI      + A  + DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R V+VD+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDICDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861
            K   + +   IQ + P VN   + F V  D  I + L A+KGVG      IME  S + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVHSIMEERSKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEK----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
              + ++     ++F  E      T      +E++S  +   R   E+ ++G Y S HPLD
Sbjct: 1018 RYQADKAAAFNSLFGGENVIDVATPEIPQGVERWSDLD---RLNRERDLVGIYLSAHPLD 1074

Query: 970  VYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             +  +L  +        E  A + G  I +  +V S ++  ++ G+  G     + +   
Sbjct: 1075 EFSIVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGST 1134

Query: 1028 EANFF 1032
            E  F+
Sbjct: 1135 EIPFW 1139


>gi|298246262|ref|ZP_06970068.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963]
 gi|297553743|gb|EFH87608.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963]
          Length = 1172

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 351/1060 (33%), Positives = 581/1060 (54%), Gaps = 64/1060 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G   +  ++ +        +AITD   ++ ALEF +   A G+ PI
Sbjct: 5    FAHLHVHTEYSLLDGLSHIKKLVQQTKELGMQHLAITDHGAMYGALEFYKACRAGGVHPI 64

Query: 71   IGCQ--LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IGC+  L  DMQD+ K  +           ++L+     GY+ L++L + +   +     
Sbjct: 65   IGCEAYLTEDMQDHSKRFSD------DYYHLLLIAKNNTGYRNLMKLTT-IANTEGYHLR 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             RI    L +   EGLI+ +G  S  I +       Q A++    ++ +FG + LY+ +Q
Sbjct: 118  PRIDKKVLAQY-AEGLIVTSGCLSAEIPKLLLAGKQQEAQQAARWYQDVFGPENLYLEIQ 176

Query: 188  RHRG-YD------RYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             H G +D      + R +Q++ Q+     +PL+ATN+  ++  ED ++HDVL+ +     
Sbjct: 177  EHHGVWDNDTPSPQARLNQMLYQMHKDLHIPLIATNDLHYIRAEDAQSHDVLLCIQTGRQ 236

Query: 240  VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +  + R +  + ++YLK+ +EM+ +F +LP+AL NTV +A +C      H   LP+    
Sbjct: 237  IDAQKRFKFDSREYYLKSPAEMLQLFPELPDALSNTVRLAEQCEVDPLAHKASLPQV--- 293

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +         + L    + G++ R        G   +  +++LD+E ++I +M ++ YFL
Sbjct: 294  QIPPQYASANDYLYALCLEGVKYRF-------GELTEPIKRQLDYEFSIIMQMGYATYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D++ +A+ + I     RGS AGS+ AY L IT++DPLR+ LLFERFLNP+R  MPD 
Sbjct: 347  VVWDYVNYARSHGIRCS-ARGSAAGSLLAYVLGITNVDPLRYQLLFERFLNPERADMPDI 405

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV-DRLCK 477
            D+DF  DRR+EVI YV  KYG + VAQ++TF ++ AK +++DV RA  M    V DR+ +
Sbjct: 406  DMDFPDDRREEVINYVAQKYGVDHVAQMVTFNTMAAKQSVKDVARA--MGRQDVGDRITR 463

Query: 478  LIPNDPAHPV--SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            LIP  P   +  SL+++ D +   E    +P    +++ + +LEG  R+   HAAG++I 
Sbjct: 464  LIPTGPRITLRGSLESVRDLTSTYEQ---NPEAREIIDQALELEGAVRNTGIHAAGVIIS 520

Query: 536  DRPLSQLVPM-YRDVR--SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
              PL    P+  RD R  S   +TQF    +E+ GL+KFDFLGL  LT++  +L F+ + 
Sbjct: 521  SEPLELFAPLQLRDFRDASKGFITQFEQSHLEELGLVKFDFLGLSNLTIVDNTLKFIKEA 580

Query: 592  RGVKVDLSLIPFD----------DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            RG ++D+  +P D            + + LL+   T GIFQLE + MR+ ++ ++P  +E
Sbjct: 581  RGEEIDMEKLPLDLTGDPKQDRKRAKAFELLSAGETTGIFQLEGAKMREYIKQLKPTSVE 640

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            DI+A+++LYRPGP+++I  + + K+G+  +  +   +   L+E+ G+I+YQ+QV+ IA  
Sbjct: 641  DIMAMIALYRPGPMESIPYFIDAKHGRRAVQYLDERLKTWLEESYGIIVYQDQVLLIAVN 700

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            L+G+S  + +  R+A+ KKI  E++  K  FI G   NG+S  IA  +FE +  F  YGF
Sbjct: 701  LAGFSWGKVNKFRKALSKKIMHEVEGYKGDFIQGCIHNGMSPKIAEELFEQIKPFGGYGF 760

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NK+HAA+YAV+++ TA++K +Y  EF+AA+MT E  +  KI     + ++  ++I+ P V
Sbjct: 761  NKAHAASYAVVAFSTAYLKANYTAEFMAATMTTEAADARKIANAIAECKRMGVKILGPDV 820

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRR 880
            N     F V +  + + L AIKG+G      I+EA  A  PF SL DFC+RV+ + + + 
Sbjct: 821  NKSSKGFTVEEGGVRFGLLAIKGIGDAPIDAIIEARQAKGPFKSLADFCTRVNPQSVGKG 880

Query: 881  VLESLVFAGALDCFGYS-RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKG---TF 934
             LE+L  AGALD  G   R  LL SL+   +Y +   + + +   ++F    E G    F
Sbjct: 881  ALETLAKAGALDSLGRGQRHILLASLERAMQYGKGEREAQEHGLLSLFGDIEEHGGDLAF 940

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGN 993
            S    +E+  ++      + E+ ++G Y + HPL     IL   G+  +   +   + G 
Sbjct: 941  SLATNVEEIPMQQ---LLDWERELIGVYITQHPLTHLSDILASKGVTHHLGQITDELNGQ 997

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + +  M+   ++  T+KG  +  +   +         FP
Sbjct: 998  KVIVGGMIKEARRITTKKGDDMCVIQLEDMYGTVGVTVFP 1037


>gi|239940546|ref|ZP_04692483.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL
            15998]
 gi|239987031|ref|ZP_04707695.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL
            11379]
 gi|291443979|ref|ZP_06583369.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL
            15998]
 gi|291346926|gb|EFE73830.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL
            15998]
          Length = 1178

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 354/1076 (32%), Positives = 558/1076 (51%), Gaps = 73/1076 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VH+ YSLL+GA  L ++ +         IA+TD  NL  A +F   A  A + 
Sbjct: 4    PPFTHLHVHTQYSLLDGAARLKDMFEAANEMGMTHIAMTDHGNLHGAYDFFHSAKKADVT 63

Query: 69   PIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSR 118
            PIIG +  +  +    K   Q   P      +          +  S   G   L  L S 
Sbjct: 64   PIIGIEAYVAPESRKHKRKVQWGQPHQKRDDVSGSGGYTHKTIWASNKTGLHNLFRLSSD 123

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             Y     ++  R+    + +  +EGLI  TG  SG +           A +    +K +F
Sbjct: 124  AYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDYKDIF 182

Query: 179  GD-RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            G+ + ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+ +  
Sbjct: 183  GEGKYFLELMDHGIEIERRVRDGLLEIGKKLNIPPLVTNDSHYTYAHEATAHDALLCIQT 242

Query: 237  STVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAP-IL 292
               +S  DR R     +YLK   EM ++ S     E   NT+ +A++        A  ++
Sbjct: 243  GKNLSDPDRFRFDGTGYYLKTTDEMYAVDSSDAWQEGCRNTLLVAQQIDTTGMFEAKNLM 302

Query: 293  PRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            P+F I +   +I   +E   R     G+  R   G         D ++++++E+++I +M
Sbjct: 303  PKFEIPEGFTEITWFQEEVRR-----GMARRFPNGV------PDDRQKQVEYEMDIIIQM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+ 
Sbjct: 412  RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
             DRL K +P              DP HP   +A       R     +P V ++++ ++ +
Sbjct: 472  GDRLTKAMPADVLGKGIDLNGITDPKHPRYSEA----GEIRGMYENEPDVKKVIDTAKGV 527

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ 
Sbjct: 528  EGLVRQMGVHAAGVIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRN 587

Query: 579  LTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  ++  + + +G+ +++  +P DD +TY LL    TLG+FQ +   MR  L  MQP
Sbjct: 588  LTIMDDAIKMVKSNKGIDLEMLSLPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQP 647

Query: 638  DCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIY 691
            D  EDI A+ +LYRPGP  +++   Y  RKNG+++I  IHP ++  LKE    T G+I+Y
Sbjct: 648  DNFEDISAVSALYRPGPMGMNSHTNYAERKNGRQEITPIHPELEEPLKEVLGLTYGLIVY 707

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F  GA + G S      +++
Sbjct: 708  QEQVQKAAQIVAGYSLGEADILRRVMGKKKPEELAKNFVLFEKGAKEKGFSDAAIKALWD 767

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +L  FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+
Sbjct: 768  VLVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRR 827

Query: 812  FNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFC 869
              I+++PP+VN    +F   GD+ I + L A++ VG      I+ +  A   + S  DF 
Sbjct: 828  MRIKVLPPNVNESLSNFAAQGDDVILFGLTAVRNVGQNVVDSIIRSRKAKGKYSSFPDFL 887

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             +V++   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F  
Sbjct: 888  DKVEAVVCNKRTIESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGG 947

Query: 930  EKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                           VE S V +E       E+ +LG Y S HPL   + +L        
Sbjct: 948  G--EEESGEPGFGLDVEFSDVEWEKAYLLAQEREMLGLYVSDHPLFGLEHVLSDKA---- 1001

Query: 984  EESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + S++ + G +      + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1002 DASISQLTGGDYSDGSVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1057


>gi|228470784|ref|ZP_04055632.1| DNA polymerase III, alpha subunit family [Porphyromonas uenonis 60-3]
 gi|228307457|gb|EEK16462.1| DNA polymerase III, alpha subunit family [Porphyromonas uenonis 60-3]
          Length = 1272

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 346/1053 (32%), Positives = 551/1053 (52%), Gaps = 104/1053 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            +V L VHS YS+L+G   +  I+DK  A   P IA+TD   ++    F+           
Sbjct: 18   YVPLHVHSHYSILDGMAPVEKIVDKAVACGMPGIALTDHGAMYGIKNFTNYANDKINGDK 77

Query: 61   --------------KACAAG------------------IQPIIGCQ-------LDIDMQD 81
                          +A AA                    + IIGC+       L++  +D
Sbjct: 78   LSQIKSLGKQIKELEADAANAEEVARLQEEVKTIERSLFKAIIGCEVYVARRSLELKDKD 137

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-SVRICLSWLQEIG 140
                 N  ++   +   ++LL    +GY+ LI++VS  +  + G+    RI    L E  
Sbjct: 138  AKDPDNPTRSIDRSGYHLILLAKNLKGYRNLIKMVSIAW--EHGEYYKPRIDKKLLTE-H 194

Query: 141  TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR------GYDR 194
             EG+I  +    G I +       + A +    +++ FG+  Y+ +  H       G + 
Sbjct: 195  HEGIIASSACLGGEIAQHILHGRLEEARETARWYQETFGEDYYLEIMLHPNSDPLGGQET 254

Query: 195  YRESQVVQ---LAYTHELPL--VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            Y++ Q+V    L    EL +  +ATN++ FL+EED EAHD L+ +  ++ +S  +R R T
Sbjct: 255  YQKQQLVAQEVLKIGQELGIKVIATNDTHFLNEEDAEAHDHLICMTTNSPISDPNRMRYT 314

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               +LK+  EM ++F+D P+ LENT+E+  +  +    HAP++P F   E  +    E++
Sbjct: 315  KQEWLKSPEEMTALFADYPDVLENTLEVCDKVEYYSIDHAPLMPHF---ELPEGFASEDD 371

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR+    G + R             + ++R+D EL VI  M F GYFL+V DFI  A+K
Sbjct: 372  YLRHLTYEGAKKRYGDPV------PPEVQERIDMELGVIQNMGFPGYFLVVQDFIAAARK 425

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              + VGPGRGS AGS  AY L+IT I+P+++ LLFERFLNPDR+SMPD DIDF    R  
Sbjct: 426  LGVRVGPGRGSAAGSAVAYCLSITQIEPIKYGLLFERFLNPDRISMPDIDIDFDDKNRWR 485

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV-- 487
            V+ +V NKYG + V+ IIT  ++  K A++ V R  ++P  Q +RLCKLIP+ P   V  
Sbjct: 486  VLDWVTNKYGRDHVSNIITLTTMATKGAIKGVARVEELPLDQANRLCKLIPDRPPEGVKH 545

Query: 488  -SLQ-AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             +L+  + ++  FREA ++ +  +   +  +++LEG       HA G++I   P+S +VP
Sbjct: 546  LNLEWMVQNNQEFREASVSQNEQLANTIRYARQLEGTASTTGVHACGVIISGPPVSDVVP 605

Query: 545  MYRDVRSDLP----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599
            +   +  D      V Q+  K IE  GLIK DFLGL+TL+++  +L+ +    G+ +D+ 
Sbjct: 606  LSTAIDPDTNERKLVAQYEGKVIEPTGLIKMDFLGLQTLSIINDALENIKVSYGIDLDID 665

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +T+ L +   T+G FQ ES GMR+ L+ ++P   +D++A+ +LYRPGP+DNI 
Sbjct: 666  TIPVDDPKTFELYSQGDTVGTFQFESPGMRKYLQQLEPTEFKDLVAMNALYRPGPMDNIP 725

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RK+G+++I    P ++P LK+T G+ +YQEQVM ++++L  ++  ++D LR+AMGK
Sbjct: 726  TFIERKHGRQEITYDLPEMEPYLKDTYGITVYQEQVMILSRVLGDFTRGDSDSLRKAMGK 785

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K ++EM K + +F+      G  +     I++   KFA Y FNKSH+  YA ++YQTA++
Sbjct: 786  KKEKEMAKYRIKFVENGVTKGHPRETLERIYDGWQKFASYAFNKSHSVCYAWVAYQTAYL 845

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP +F+AA +T   +  +K+ K+ ++ +   +++  P VN     F    D  I + 
Sbjct: 846  KAHYPAQFMAALLTCNQNKSDKLTKYLEEVQHMGLEVKGPDVNESFTAFSANKDGVIRFG 905

Query: 839  LAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L  I  VG + A  I++   ++  +  + DF  R D    +RR LE+L+ +GA D FG  
Sbjct: 906  LGGISHVGLSVAEAIIKERKEQGAYQDVYDFFQRTDLTNCSRRALEALILSGAFDSFGID 965

Query: 898  RMQLLQS-----------------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
            R                       L  + +Y + +E  RT    ++F     +      +
Sbjct: 966  REVYFAPIAKSGVSGLSYGKDETFLTALMQYGKILESERTQVQASLFGDSDPSVKLPKPI 1025

Query: 941  EKFSVENSS--VRFENEQRVLGFYFSGHPLDVY 971
                VE  S   R   EQ  +G Y S HPLD Y
Sbjct: 1026 PPKDVEPWSNLERLTKEQSYIGMYLSAHPLDPY 1058


>gi|237800158|ref|ZP_04588619.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023015|gb|EGI03072.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 728

 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 316/741 (42%), Positives = 445/741 (60%), Gaps = 39/741 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4   SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64  ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
            I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+ +QR 
Sbjct: 114 VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
           +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173 NRTNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHN 232

Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             D  YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233 YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362
           +   R  +  GLE RLA        + Y A  Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289 DEYFRKVSFDGLEERLAVLLPKDTTEDYEARRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469 VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
            P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEAPLD 587

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588 IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658 IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            +V  + NRK+G+ ++   +P +D       P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 648 GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709 EADVLRRAMGKKIKEEMDKQK 729
            AD+LRRAMGKK  EEM KQ+
Sbjct: 706 GADMLRRAMGKKKPEEMAKQR 726


>gi|70726223|ref|YP_253137.1| DNA polymerase III subunit alpha [Staphylococcus haemolyticus
            JCSC1435]
 gi|68446947|dbj|BAE04531.1| DNA polymerase III, alpha chain [Staphylococcus haemolyticus
            JCSC1435]
          Length = 1067

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 342/1023 (33%), Positives = 569/1023 (55%), Gaps = 78/1023 (7%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL +H++Y LL  +L +N+++ K   +    +AITDTN L+   +F      A I+PI G
Sbjct: 4    HLNLHTTYDLLNSSLRINDVVKKAQNNHYDTLAITDTNVLYGFPKFYDACIKANIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              + +++ D L           T+ ++VL ++  +G + L +L S + +    KQ   I 
Sbjct: 64   --MTVNVTDGLY----------TIETVVLAINN-DGLRSLFQLSSAIKM----KQKEVIS 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            + WL++  T   I+    +         F + Q                +++N       
Sbjct: 107  VEWLKKYSTNFAIIFKQANQSHYSIVEQFQNHQ---------------NIFIN------- 144

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
                      LA+ + + +V   N+ +L++ED E    L A+ ++T +   +      +H
Sbjct: 145  ------HSSDLAFYNNIRVVWFKNARYLNQEDVETIPALEAIKNNTKIDLVNDTEDIGEH 198

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            + K ++E+ ++  D  E   NT+E+A  C+  L+ H  +LP+F     +  ++   ++L+
Sbjct: 199  FPK-QNELETLNID-REVWNNTLELASLCNASLEYHQNLLPKFDAPSGNSSKEYLWSQLQ 256

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            + ++  +E+           H + Y +RL+ E  VI  M F  YFLIV+D I +AK +++
Sbjct: 257  S-SLKKMELN----------HDERYTKRLEHEYRVITEMGFEDYFLIVSDLIHYAKTHDV 305

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS+ ++ L IT IDP+RF+LLFERFLNP+R++MPD DIDF   RR+ VI+
Sbjct: 306  MVGPGRGSSAGSLVSFLLGITTIDPIRFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQ 365

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YVQ+KYG  RV+ I+TFG L  +A  RDVGR +      ++ + KLIP+     ++L   
Sbjct: 366  YVQDKYGKHRVSGIVTFGHLLTRAVARDVGRIIGFNDKTLNEISKLIPHQLG--ITLDKA 423

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
             +D +F++    +   ++  E+S+KLEGL RH STHAAGI+I D+PL    P+   +   
Sbjct: 424  YEDEQFKQFVHRNHRHEKWFELSKKLEGLPRHTSTHAAGIIINDQPLYNYAPL--TLGDT 481

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611
              +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +++  IPF+D + + L
Sbjct: 482  GLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIITQVKKDLNISLEIEEIPFNDVDVFKL 541

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            L+   T GIFQLES G+R+ L+ +QP+  EDI+A+ SLYRPGP++ I  Y +R++ + +I
Sbjct: 542  LSRGDTTGIFQLESEGVRKVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYISRRHNESEI 601

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              +HP ++P+LK T GVIIYQEQ+MQIA   + +S  +AD+LRRAM KK +  ++ +++ 
Sbjct: 602  KYLHPDLEPILKNTYGVIIYQEQIMQIASQFASFSYGQADILRRAMSKKNRAVLESERQH 661

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            F+ GA KN   + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  A++K HYP  F A  
Sbjct: 662  FVEGAIKNKYDEKISKQIFDLILKFADYGFPRAHAVSYSKIAYIMAYLKVHYPNYFYANI 721

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            ++  + N  K      +A+   ++I+PP++N     ++   + IY SL AIKGVG  + +
Sbjct: 722  LSNVVGNESKTAAIIDEAKNQKLKILPPNINESHWYYRATKSNIYLSLGAIKGVGYQSVK 781

Query: 852  HIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
             I+ E   +  +    DF  R+ ++   R++LESL+  GA D FG +R  LL S+D +  
Sbjct: 782  SIVDERYQNGKYKDFFDFTRRIPNRIKTRKLLESLILVGAFDTFGKTRSTLLSSIDQVLD 841

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
                VE+N  +   +I    K +++DK   ++FS +  S     E   LGFY S HP++ 
Sbjct: 842  EVSNVEQN--DLLLDILT-PKQSYADK---DEFSDQMIS---SYEMEYLGFYVSNHPVEK 892

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                 + +GI      V     N+  +   V   +Q +T+ G  + ++  ++     +A 
Sbjct: 893  QFNKKQYLGIYTLSNVV-----NHKPILVQVDQIKQIRTKNGQNMAFLVLNDGRHTMDAV 947

Query: 1031 FFP 1033
             FP
Sbjct: 948  LFP 950


>gi|194306037|dbj|BAG55471.1| putative DNA polymerase III, alpha subunit [uncultured bacterium]
          Length = 1317

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 376/1111 (33%), Positives = 589/1111 (53%), Gaps = 111/1111 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL VHS YSLL+G   +N+++++     QPAIA+TD   ++  + F +   + G++P
Sbjct: 6    TFVHLHVHSEYSLLDGLSRINDLVERAVELGQPAIALTDHGAMYGTMPFYRACKSGGVKP 65

Query: 70   IIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IIG +  +    MQD  K   + K  F     +++L +   GY  L+E+ SR  L D   
Sbjct: 66   IIGIETYLAMRSMQD--KDAQRDKERF----HMLMLAANQTGYMNLLEVASRAQL-DGYY 118

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
               RI  +++    +EG+I  TG  +  I RA    +  +A+K +  +  +FG DRL+V 
Sbjct: 119  YKPRIDRNFMAA-HSEGIIATTGCMAAEIPRAIGAGNMALADKLMGEYVDIFGTDRLFVE 177

Query: 186  LQRHRGYDRYRESQ-VVQLAYTHELP--LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            LQ H   +    +Q ++++A    L    +ATN+  +    D   H+VL+ +   + V+ 
Sbjct: 178  LQEHSIPELTTINQKLIEMAPRFGLQNNFLATNDVHYTRAADANPHEVLLCIQTGSTVNA 237

Query: 243  KDRPRVTPDHYLKNRSEMVSIF--SDLPE-----ALENTVEIARRCSFILQVHAPILPRF 295
                     +YLK+  EM ++F  +  PE     +L N++ I   C   L      LP F
Sbjct: 238  PKLTFSDKGYYLKSYDEMFNLFRQNGYPEDIVLNSLRNSLAIVEMCDVNLDSKGYHLPEF 297

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
               E  D        LR+    GL  R  +    +  + +D R RL+ ELN+I RM F  
Sbjct: 298  DVPEGYDAH----GYLRHLCEQGLIWRYGE---ERARNDEDLRARLEHELNIITRMGFDT 350

Query: 356  YFLIVADFIQWA----------------------KKNNIPVGPGRGSGAGSVTAYALTIT 393
            YFLIV D  +WA                      K+++I     RGSGAGSV AY L IT
Sbjct: 351  YFLIVWDLCEWAVRSDAWWETHGDPYPYESYTDWKEHDIWWNV-RGSGAGSVVAYTLGIT 409

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
             IDPL   L+FERFLNP R+SMPD D+D+  D R +++ Y + +YG E+VAQIITFG++ 
Sbjct: 410  SIDPLVNGLIFERFLNPGRVSMPDIDLDYPDDVRGQMVAYTKRRYGEEKVAQIITFGTMG 469

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLAD-----PS 507
            A+AA+RDVGRAL MP   VD + +L+P  P  PV ++ + D D  F  A L D      +
Sbjct: 470  ARAAIRDVGRALDMPLPDVDGVARLVPAIPGKPVKIKNVLDPDHEFYSAELTDRYKRESA 529

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP------VTQFNMK 561
            V  LL+ +  LEG+ RHAS+HAAG+++ DRPL + VP+ R    D        VTQ+ M+
Sbjct: 530  VKTLLDTATNLEGVARHASSHAAGVIVSDRPLQEYVPLNRPTSGDEGLGGVDRVTQWPME 589

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET-----------Y 609
             +E  GL+K DFLGL TLT+++++   + +R G    +  IP+D+              +
Sbjct: 590  IVESIGLLKVDFLGLSTLTVMRRAARLIEERYGTVYTMDNIPYDEGHIGPDPERDPELLF 649

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG-- 667
             +L      G+FQ+E +GMR+ +  M+P   + IIA +SLYRPGP++NI  Y  R +   
Sbjct: 650  DMLGRGDVAGVFQVEGAGMRRLMMEMKPRRFDHIIAAISLYRPGPMENIPEYIRRMHSSI 709

Query: 668  --KEKIVSIH-PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
               + IV  H P ++P+LK+T G+++YQEQ+++IA  L+GY+  +AD++R+A+ KK K+ 
Sbjct: 710  YDNKDIVEYHTPALEPILKDTYGILVYQEQIIRIASDLAGYAPGDADMIRKAVAKKKKKL 769

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M++ + +F  GA + G S+ +   I+  +  FA YGFNK+HAA YA ++ QTA++K HYP
Sbjct: 770  MEEHRIKFTEGAMERGFSREVCEAIWGDIEFFARYGFNKAHAADYAKVTCQTAFLKAHYP 829

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLA 840
            VE+LAA +++E DN EK++++  +A+   I I PP +N   +DF + D+     I + L 
Sbjct: 830  VEYLAAMLSVERDNTEKVRRYFAEAKNLGIDIEPPDINRSDLDFTIEDDHERPCIRFGLG 889

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AIK  G      I+ E  A+  F  L+D   RVD +++ +R LE ++ A   + +G +  
Sbjct: 890  AIKNAGEAALNLILDERRANGTFADLQDLSERVDLRRVGKRALEFMIKARVFERWG-TMP 948

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----------KITLEKFSVENS 948
            Q L++LD I         + +  HE   A +   F             K+T +     +S
Sbjct: 949  QFLEALDRIV-------ADSSKTHEAAAAGQMSLFGALGGSNGGNGGMKLTADLLKPVDS 1001

Query: 949  ------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                      E E+  LG + S HP++    +L             T+ G  +R+A M+ 
Sbjct: 1002 LEPIPHKQMLEWEKEALGVHVSEHPMERPLAMLTSHTSATIGGLDITMNGKQVRIAGMIS 1061

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +   T+KG  + + T  +   + +   FP
Sbjct: 1062 TLRTLTTKKGDPMAFATLEDMDNKIDLVLFP 1092


>gi|258648347|ref|ZP_05735816.1| putative DNA polymerase III alpha subunit [Prevotella tannerae ATCC
            51259]
 gi|260851512|gb|EEX71381.1| putative DNA polymerase III alpha subunit [Prevotella tannerae ATCC
            51259]
          Length = 1256

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 369/1136 (32%), Positives = 586/1136 (51%), Gaps = 124/1136 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------- 63
            FVHL VHS YS+L+G  S+ N+L K  AD    +A+TD  N+    EF  +A        
Sbjct: 4    FVHLHVHSQYSILDGQASIGNLLKKAVADGMQGMALTDHGNMMGVKEFYNEAKKAIGKAK 63

Query: 64   ---------------------AAGIQPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSI 99
                                 AA  +PI+GC++ +    ++D    T+Q      +   +
Sbjct: 64   ESLKKAQEEGGSEEQIAKLQRAAAFKPILGCEMYVARRTLKDKKDKTDQ------SGHHL 117

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++L   + GY  LI+LVS+ ++ D      R     L +   EGLI+ +    G I    
Sbjct: 118  IVLAKNSVGYHNLIKLVSKAWV-DGFYMRPRTDHEELAKY-REGLIVCSACLGGEIPSNI 175

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-------------VVQLAYT 206
              +    A++    FK +FGD  Y+ LQRH   D   ++              ++QLA  
Sbjct: 176  LKDDIDKAKEAARWFKSIFGDDYYLELQRHEVKDPSIQANREVYGLQTKVNEVLIQLAKE 235

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
             ++ L+ +N+  F++EED EAHD L+ ++    +    R   T   + K + EM  IF D
Sbjct: 236  LDIKLICSNDVHFVNEEDGEAHDRLICLSTGKDLDDPKRLLYTKQEWFKTQREMNKIFED 295

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRF-------IEKECDDIQKEEE--NEL------ 311
            +PEA+ NT+EI  +       HAPI+P F        E+E      EE+  NE       
Sbjct: 296  IPEAMRNTIEICNKVELYSIDHAPIMPNFPIPESFGTEEEYRSRLTEEDLFNEFTRDENG 355

Query: 312  -----RNKAVAGLE------------------VRLAQGAIAKGYH---AQDYRQRLDFEL 345
                 R + +  +E                   +LA     + Y    + + ++R++FEL
Sbjct: 356  KEIVSREEGLKKIEKLGGFNRLYRIKFEADYLAKLAYDGAKRRYGEPLSDEVKERVNFEL 415

Query: 346  NVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +++  M F GYFLIV D+I  A+    + VGPGRGS AGS  AY L IT IDP+++ LLF
Sbjct: 416  HIMKVMGFPGYFLIVQDYINTARNELGVSVGPGRGSAAGSAVAYCLGITQIDPIKYDLLF 475

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNPDR+S+PD D+DF  D R  V+++V +KYG E  A IIT+G++  K+A++DV R 
Sbjct: 476  ERFLNPDRISLPDIDVDFDDDGRGRVLQWVTDKYGAENCAHIITYGTMATKSAIKDVARV 535

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQ--------AIADDSRFREARLAD-PSVDRLLEIS 515
             ++P S+ +RLCKLIP+      S +        AIA     REA  +D P +   +  +
Sbjct: 536  ERLPLSESNRLCKLIPDKLPEDSSGKSPKLTLDNAIAAIPGLREAEASDNPLLRDTIRYA 595

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKF 571
            ++LEG  R+   HA G +I    +S  VP+     ++    L  TQ+  + IE+ GLIK 
Sbjct: 596  RQLEGNVRNTGVHACGFIICKDKISDWVPISTADDKETGEKLRCTQYEGRVIEETGLIKM 655

Query: 572  DFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            DFLGLK L++++++L+ +    G+ +D+  I   D  TY L +   T+G FQ ES+GM+ 
Sbjct: 656  DFLGLKNLSIIKEALENIKLSLGIDLDIDKIDISDKATYQLFSDGNTIGTFQFESTGMQG 715

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
             L  +QP   ED+IA+ +LYRPGP+  I  +  RK G+E I    P ++  LKET G+ +
Sbjct: 716  HLRNLQPSTFEDLIAMNALYRPGPMQYIPKFIQRKKGEETITYDLPCMEKYLKETYGITV 775

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVM +++ ++ ++  E+D LR+AMGKK+ ++++    +FISG   NG  + I   I+
Sbjct: 776  YQEQVMLLSREIANFTRGESDTLRKAMGKKLIDKLNHMYPKFISGGKANGYDEKILEKIW 835

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            +    FA Y FNKSHA  Y+ I+YQT ++K +YP +++A +M+  + N+ +I KF  +++
Sbjct: 836  DDWKAFASYAFNKSHATCYSWIAYQTGYLKANYPSQYMAGAMSRALSNITEITKFMDESK 895

Query: 811  QFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLE 866
            +  I  + P +N   + F V   GD  I + L AIKGVG+    +I+ E   +  F  + 
Sbjct: 896  RMGINTLGPDINESLMKFSVNHRGD--IRFGLGAIKGVGSQAVENILKEREVNGQFSDIY 953

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNR 919
            +   R++    NR+ LE+L  AGA D FG +R Q ++        LD + +Y    + ++
Sbjct: 954  NVMERINLTTCNRKTLENLAIAGAFDSFGIAREQFVEIDESGGDFLDALIRYGTQYKIDQ 1013

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSV-RFENEQRVLGFYFSGHPLDVYKPILRKM 978
            +    ++F  E      K      S   +++ R   E+ ++G Y SGHPLD YK IL K+
Sbjct: 1014 SQAQNSLFGEEAAAIITKPLPAPVSQPWTNLERLNKERDLIGIYISGHPLDKYKIILNKV 1073

Query: 979  GIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                    +++  +   +I    +V   ++  T++    G +   +    YE  F+
Sbjct: 1074 CTTTVADLDNLNALADQDISFGGIVTDTREGMTKRDKPYGVIKLEDYKGAYELMFW 1129


>gi|218297030|ref|ZP_03497707.1| DNA polymerase III, alpha subunit [Thermus aquaticus Y51MC23]
 gi|218242585|gb|EED09122.1| DNA polymerase III, alpha subunit [Thermus aquaticus Y51MC23]
          Length = 1645

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 332/827 (40%), Positives = 477/827 (57%), Gaps = 64/827 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           F HL  H+ +SLL+GA  L ++L   K    + PA+A+TD  NLF A+EF +KA A G++
Sbjct: 7   FAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATAMGVK 66

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PIIG +  +  +       +GK        + LL     GYQ L+ L SR YL +   + 
Sbjct: 67  PIIGYEAYVAAESRFD-RKRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYL-EGFYEK 124

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            RI    L+E  +EGLI L+G     I +    +   +AE RL  +  +FGDR ++ +Q 
Sbjct: 125 PRIDREILRE-HSEGLIALSGCLGAEIPQFILQDRLDLAEARLNEYLSIFGDRFFIEIQN 183

Query: 189 HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H   ++ + +QV+ + A  + L +VATN+  ++ +ED  AH+VL+A+   T +   +R R
Sbjct: 184 HGLPEQQKVNQVLKEFAQRYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTTLDDPERWR 243

Query: 248 VTPDH-YLKNRSEMVSIFSDLP---EALENTVEIARRCSFILQVHAPI---LPRF----- 295
              D  Y+K   EM ++  ++    E  +NTVEIAR C   L +   +   +PRF     
Sbjct: 244 FPCDEFYVKTPEEMRAMLPEVEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPRFPLPEG 303

Query: 296 ---------------IEKECDDIQK-----------------------EEENELRNKAVA 317
                          + +  D I +                       E    +  KA  
Sbjct: 304 RTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERVLAEALARVEEKAWE 363

Query: 318 GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
            L  RL      + + A+    R  +EL+VI RM F GYFLIV D+I WA+ + + VGPG
Sbjct: 364 ELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARGHGVSVGPG 423

Query: 378 RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
           RGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF    RD VI+YV+ +
Sbjct: 424 RGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYVRER 483

Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDS 496
           YG ++VAQI TFGSL +KAAL+DV R   +P+ + + L KLIP     P  LQ A+    
Sbjct: 484 YGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLQEAVQVVP 543

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
             R     D  + +++E++ +LEGL RHAS HAAG+VI   PL+ LVP+ RD +   PVT
Sbjct: 544 ELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRD-QEGRPVT 602

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTK 615
           Q++M  +E  GL+K DFLGL+TLT L ++   + + +GV++D   +P DD +T+ LL+  
Sbjct: 603 QYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVELDYDRLPLDDPKTFELLSRG 662

Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV--- 672
            T G+FQLES GM   + G++P  +EDIIALVSLYRPGP+++I  Y  R +G+E +    
Sbjct: 663 ETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHHGQEPVSYAE 722

Query: 673 --SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
                  + P+L ET G+ +YQEQ+MQIA  ++GYSL EAD+LRRAMGKK  EEM K +E
Sbjct: 723 FPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKRVEEMQKHRE 782

Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
           RF+ GA + G+ +  A  +F++L  FA+YGFNK   A   V+ ++T 
Sbjct: 783 RFVRGAKERGVPEEEANRLFDMLEAFANYGFNKCLPARAKVVDWRTG 829



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 103/277 (37%), Positives = 155/277 (55%), Gaps = 14/277 (5%)

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            + SHAAAY+++SYQTA++K HYPVEF+AA +++E  + +K+ ++ +DAR   I ++PP +
Sbjct: 1239 HNSHAAAYSLLSYQTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARALGIPVLPPDI 1298

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRR 880
            N    DFKV    I + L+A+K VG   AR I+E      PF SL DF  R+  + +N+R
Sbjct: 1299 NRSGFDFKVVGEEILFGLSAVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKR 1358

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKIT 939
             LESLV AGALD FG  R +LL SL+ + ++A    +   +    +FA  E+    +   
Sbjct: 1359 ALESLVKAGALDAFG-DRARLLASLEPLLRWAAETRERGRSGLVGLFAEVEEPPLVEASP 1417

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NNI 995
            L++ ++    +R+E E   LG Y SGHP+  Y P LR++     EE    +RG      +
Sbjct: 1418 LDEITM----LRYEKE--ALGIYVSGHPVLRY-PGLREVASCTIEELSEFVRGLPGRPKV 1470

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             L+ MV    +K TR G  +   T S+     E   F
Sbjct: 1471 LLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVF 1507


>gi|254882838|ref|ZP_05255548.1| DNA polymerase III alpha subunit [Bacteroides sp. 4_3_47FAA]
 gi|319643401|ref|ZP_07998027.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_40A]
 gi|254835631|gb|EET15940.1| DNA polymerase III alpha subunit [Bacteroides sp. 4_3_47FAA]
 gi|317385030|gb|EFV65983.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_40A]
          Length = 1265

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 364/1144 (31%), Positives = 596/1144 (52%), Gaps = 131/1144 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YS+L+G  S+  ++DK  AD    IA+TD  ++F   EF            
Sbjct: 4    FVHLHVHTQYSILDGQASIPRLVDKAMADGMKGIAVTDHGDMFGIKEFFNYVNKKNSSTN 63

Query: 61   ------KACAAGIQ-----------------------------PIIGCQLDIDMQDNLKM 85
                  K   AG++                             PI GC++ +  +   ++
Sbjct: 64   SEIKDLKKRIAGLEKGTVECDNPEAELVACKEKLETAKKKLFKPIFGCEMYVARR---RL 120

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--LDQGKQSVRICLSWLQEIGTEG 143
             N+   P  +   +V+L    +GY  LI+LVS+ +        ++ R+ L    E   EG
Sbjct: 121  FNKEGKPDQSGYHLVVLAKNEKGYHNLIKLVSKAWTEGFYMRPRTDRVEL----EKYHEG 176

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYRE 197
            LI+ T   +G + R       + AE+ +  +K++FGD  Y+ LQRH+       ++ Y+ 
Sbjct: 177  LIVCTACIAGEVPRNIIAGKYEEAEEAIQWYKRVFGDDFYLELQRHKATVPRANHEAYKL 236

Query: 198  SQV-----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
             Q+     ++ +    + LV TN+  F+ EE+ EAHD L+ ++    +   +R   +   
Sbjct: 237  QQIANEKLIEYSKKFNVKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYSKQE 296

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFI 296
            ++K R+EM  +F+D+PEAL NTV+I  +  F    HAPI+P                ++ 
Sbjct: 297  WMKTRAEMNEVFADVPEALSNTVDICDQVEFYSIDHAPIMPTFAIPEDFGTEEGYRKKYT 356

Query: 297  EKECDD----------IQKEEENELRNKAVAG--------LEVRLAQGAIAKGYH----- 333
            EK+  D          +  EE  + + + + G        LE    +    +G H     
Sbjct: 357  EKDLFDEFTQDENGNVVMSEEAAKAKIEKLGGYDKLYRIKLEADYLKKLALEGAHKRYGE 416

Query: 334  --AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYAL 390
              +++ ++R+ FEL+++  M F GYFLIV DFI+ A++  ++ VGPGRGS AGS  AY L
Sbjct: 417  VLSEEVQERIKFELHIMKTMGFPGYFLIVQDFIRAAREELDVSVGPGRGSAAGSAVAYCL 476

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             IT IDP+ + LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA IIT+G
Sbjct: 477  GITKIDPIAYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAHIITYG 536

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPS 507
            ++  K A++DV R  ++P S+ DRLCKL+P+  P   ++L  AIA     + A ++ DP 
Sbjct: 537  TMATKLAIKDVARVQKLPLSESDRLCKLVPDKIPDKKMNLPNAIAYVPELQAAEVSPDPI 596

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWI 563
            +   ++ ++ LEG  R+   HA G +I    ++  VP+     ++    + VTQ+    I
Sbjct: 597  LRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVI 656

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            E  GLIK DFLGLKTL++++++++ +   +G+ +D+  +   D  TY L +   T+G FQ
Sbjct: 657  EDTGLIKMDFLGLKTLSIIKEAIENIKHSKGIILDIDEVDISDPPTYALYSEGRTIGTFQ 716

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
             ES+GM++ L  ++P   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  L
Sbjct: 717  FESAGMQKYLRELEPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPIMEKYL 776

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            K+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG  
Sbjct: 777  KDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHD 836

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA+M+  + N+ +I
Sbjct: 837  PKVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAATMSRNISNITEI 896

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEA-SA 858
             K   +++   I    P VN   + F V   GD  I + L AIKGVG +  + I+E    
Sbjct: 897  TKLMDESKATGIMTKGPDVNESYLKFSVNRKGD--IRFGLGAIKGVGESAVQSILEERER 954

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQK 910
            +  +  + DF  RV+    NR+ +E+L  AGA D F G  R              + + +
Sbjct: 955  NGEYKDIFDFVQRVNLSACNRKNIENLALAGAFDSFTGIKREDFFVKNAKDETFTEVLVR 1014

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            Y    + ++     ++F  E         +          R   E+ ++G Y S HPLD 
Sbjct: 1015 YGNKYQMDKAAAANSLFGGENQVDIATPEIIPSPAWGDLERLNKERDLVGIYLSAHPLDE 1074

Query: 971  YKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            Y  IL  +      E   +  ++  ++ +  +V + ++  T+ G   G     + +   E
Sbjct: 1075 YAVILENVCNVHMAELADLTPLQNRDLTMGGIVTAVREGYTKTGKPYGIAKVEDYSGSAE 1134

Query: 1029 ANFF 1032
              FF
Sbjct: 1135 FAFF 1138


>gi|319901087|ref|YP_004160815.1| DNA polymerase III, alpha subunit [Bacteroides helcogenes P 36-108]
 gi|319416118|gb|ADV43229.1| DNA polymerase III, alpha subunit [Bacteroides helcogenes P 36-108]
          Length = 1265

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 371/1143 (32%), Positives = 589/1143 (51%), Gaps = 129/1143 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+           
Sbjct: 4    FVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSAPR 63

Query: 61   ---------------------------KACAAGI--------QPIIGCQLDIDMQDNLKM 85
                                         C A I        +P+IGC++ +  +    M
Sbjct: 64   GEIKELKKRIAGIESGEIECEDREMEIAGCRAKIAEAESKLFKPVIGCEMYVARR---TM 120

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
              +   P  +   +++L    +GY  LI+LVS  +      +  R   + L++   EGLI
Sbjct: 121  DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRGYYMRP-RTDRNELEKY-HEGLI 178

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY---- 195
            + +    G + +    +  + AE+ +  +K LFGD  Y+ LQRH+       ++ Y    
Sbjct: 179  ICSACIGGEVPKKIINDRLEEAEEAIRWYKNLFGDDYYLELQRHKATVPRANHEAYPMQQ 238

Query: 196  -RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
               +++++ A  + + ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   ++
Sbjct: 239  KANAKLLEYAKKYNIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEWM 298

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI----------------EK 298
            K ++EM ++F D+PEAL NT+EI  +  +    HAPI+P F                 EK
Sbjct: 299  KTKAEMNALFEDIPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRKKYSEK 358

Query: 299  ECDDIQKEEEN----------ELRNKAVAGLE------------VRLAQGAIAKGYH--- 333
            +  D   ++EN          + + K + G E             +LA     K Y    
Sbjct: 359  DLFDEFTQDENGNVVLDEDAAKAKIKRLGGYEKLYRIKLEADYLAKLAFDGAKKLYGDPL 418

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392
            + + ++R+ FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS  AY L I
Sbjct: 419  SDEVKERMIFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSAVAYCLGI 478

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V  KYG E+VA IIT+G++
Sbjct: 479  TKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTM 538

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSVD 509
              K A++DV R  ++P S+ DRL KL+P+  P   ++L+ AI      + A  + DP V 
Sbjct: 539  ATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEASPDPLVR 598

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEK 565
              L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE 
Sbjct: 599  DTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIED 658

Query: 566  AGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GLIK DFLGLKTL+++++++ +    RGV++D+  I   D  TY L     T+G FQ E
Sbjct: 659  TGLIKMDFLGLKTLSIIKEAVANVRLHRGVELDIDKISIKDPATYKLYCDGRTIGTFQFE 718

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+++  LK+
Sbjct: 719  SAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPIMEKYLKD 778

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI+G  KNG    
Sbjct: 779  TYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQKNGHEPK 838

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I K
Sbjct: 839  VLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLSNITDITK 898

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPF 862
               + +   I  + P VN   + F V  +  I + L A+KGVG    + IME    + P+
Sbjct: 899  LMDECKAMGINTLGPDVNESNLKFTVNREGNIRFGLGAVKGVGEGAVQSIMEEREKNGPY 958

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQW 914
              + DF  RV+    N++ +E L  AG  D F    R Q           ++ + +Y   
Sbjct: 959  KGIFDFVQRVNLNACNKKNIECLALAGGFDSFPELKREQYFAVNSKNEIFIETLVRYGNR 1018

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYK 972
             + ++     ++F  E     D  T E    E  S   R   E+ ++G Y S HPLD Y 
Sbjct: 1019 YQADQAAAANSLFGGE--NVVDIATPEILPAERWSDLDRLNRERDLVGIYLSAHPLDEYA 1076

Query: 973  PILRKMG---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
             +L  +    +   E+  A + G  I +  +V S ++  ++ G+  G     + +   E 
Sbjct: 1077 VVLEHVCNTRMAEVEDKQALV-GREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAEF 1135

Query: 1030 NFF 1032
             FF
Sbjct: 1136 PFF 1138


>gi|150004438|ref|YP_001299182.1| DNA polymerase III alpha subunit [Bacteroides vulgatus ATCC 8482]
 gi|294775512|ref|ZP_06741024.1| putative DNA polymerase III subunit alpha [Bacteroides vulgatus
            PC510]
 gi|149932862|gb|ABR39560.1| DNA polymerase III alpha subunit [Bacteroides vulgatus ATCC 8482]
 gi|294450657|gb|EFG19145.1| putative DNA polymerase III subunit alpha [Bacteroides vulgatus
            PC510]
          Length = 1265

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 364/1144 (31%), Positives = 596/1144 (52%), Gaps = 131/1144 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YS+L+G  S+  ++DK  AD    IA+TD  ++F   EF            
Sbjct: 4    FVHLHVHTQYSILDGQASIPRLVDKAMADGMKGIAVTDHGDMFGIKEFFNYVNKKNSSTN 63

Query: 61   ------KACAAGIQ-----------------------------PIIGCQLDIDMQDNLKM 85
                  K   AG++                             PI GC++ +  +   ++
Sbjct: 64   SEIKDLKKRIAGLEKGTVECDNPETELVACKEKLETAKKKLFKPIFGCEMYVARR---RL 120

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--LDQGKQSVRICLSWLQEIGTEG 143
             N+   P  +   +V+L    +GY  LI+LVS+ +        ++ R+ L    E   EG
Sbjct: 121  FNKEGKPDQSGYHLVVLAKNEKGYHNLIKLVSKAWTEGFYMRPRTDRVEL----EKYHEG 176

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYRE 197
            LI+ T   +G + R       + AE+ +  +K++FGD  Y+ LQRH+       ++ Y+ 
Sbjct: 177  LIVCTACIAGEVPRNIIAGKYEEAEEAIQWYKRVFGDDFYLELQRHKATVPRANHEAYKL 236

Query: 198  SQV-----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
             Q+     ++ +    + LV TN+  F+ EE+ EAHD L+ ++    +   +R   +   
Sbjct: 237  QQIANEKLIEYSKKFNVKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYSKQE 296

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFI 296
            ++K R+EM  +F+D+PEAL NTV+I  +  F    HAPI+P                ++ 
Sbjct: 297  WMKTRAEMNEVFADVPEALSNTVDICDQVEFYSIDHAPIMPTFAIPEDFGTEEGYRKKYT 356

Query: 297  EKECDD----------IQKEEENELRNKAVAG--------LEVRLAQGAIAKGYH----- 333
            EK+  D          +  EE  + + + + G        LE    +    +G H     
Sbjct: 357  EKDLFDEFTQDENGNVVMSEEAAKAKIEKLGGYDKLYRIKLEADYLKKLALEGAHKRYGE 416

Query: 334  --AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYAL 390
              +++ ++R+ FEL+++  M F GYFLIV DFI+ A++  ++ VGPGRGS AGS  AY L
Sbjct: 417  VLSEEVQERIKFELHIMKTMGFPGYFLIVQDFIRAAREELDVSVGPGRGSAAGSAVAYCL 476

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             IT IDP+ + LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA IIT+G
Sbjct: 477  GITKIDPIAYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAHIITYG 536

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPS 507
            ++  K A++DV R  ++P S+ DRLCKL+P+  P   ++L  AIA     + A ++ DP 
Sbjct: 537  TMATKLAIKDVARVQKLPLSESDRLCKLVPDKIPDKKMNLPNAIAYVPELQAAEVSPDPI 596

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWI 563
            +   ++ ++ LEG  R+   HA G +I    ++  VP+     ++    + VTQ+    I
Sbjct: 597  LRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVI 656

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            E  GLIK DFLGLKTL++++++++ +   +G+ +D+  +   D  TY L +   T+G FQ
Sbjct: 657  EDTGLIKMDFLGLKTLSIIKEAIENIKHSKGIILDIDEVDISDPPTYALYSEGRTIGTFQ 716

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
             ES+GM++ L  ++P   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  L
Sbjct: 717  FESAGMQKYLRELEPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPIMEKYL 776

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            K+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG  
Sbjct: 777  KDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHD 836

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA+M+  + N+ +I
Sbjct: 837  PKVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAATMSRNISNITEI 896

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEA-SA 858
             K   +++   I    P VN   + F V   GD  I + L AIKGVG +  + I+E    
Sbjct: 897  TKLMDESKATGIMTKGPDVNESYLKFSVNRKGD--IRFGLGAIKGVGESAVQSILEERER 954

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQK 910
            +  +  + DF  RV+    NR+ +E+L  AGA D F G  R              + + +
Sbjct: 955  NGEYKDIFDFVQRVNLSACNRKNIENLALAGAFDSFTGIKREDFFVKNAKDETFTEVLVR 1014

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            Y    + ++     ++F  E         +          R   E+ ++G Y S HPLD 
Sbjct: 1015 YGNKYQMDKAAAANSLFGGENQVDIATPEIIPSPAWGDLERLNKERDLVGIYLSAHPLDE 1074

Query: 971  YKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            Y  IL  +      E   +  ++  ++ +  +V + ++  T+ G   G     + +   E
Sbjct: 1075 YAVILENVCNVHMAELADLTPLQNRDLTMGGIVTAVREGYTKTGKPYGIAKVEDYSGSAE 1134

Query: 1029 ANFF 1032
              FF
Sbjct: 1135 FAFF 1138


>gi|29347640|ref|NP_811143.1| DNA polymerase III subunit alpha [Bacteroides thetaiotaomicron
            VPI-5482]
 gi|29339541|gb|AAO77337.1| DNA polymerase III alpha subunit [Bacteroides thetaiotaomicron
            VPI-5482]
          Length = 1267

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 377/1144 (32%), Positives = 592/1144 (51%), Gaps = 130/1144 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+           
Sbjct: 4    FVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63

Query: 61   ---------------------------KACAAGI--------QPIIGCQLDIDMQD-NLK 84
                                        AC A I        +PIIGC++ +  +  +LK
Sbjct: 64   GEIKDLKKRIAGIEAGTVECEDKEAEVAACKAKIVEAENKLFKPIIGCEMYVARRTMDLK 123

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
               +GK P  +   +++L    +GY  LI+LVS  +      +  R   S L++   EGL
Sbjct: 124  ---EGK-PDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR-- 196
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+       ++ Y   
Sbjct: 178  IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237

Query: 197  ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  + + A  + + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKYLQEYARKYNIKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P                ++ E
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKYTE 357

Query: 298  KECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH-- 333
            K+  D          +  EEE + + K + G E             +LA     + Y   
Sbjct: 358  KDLFDEFTQDENGNVVLSEEEGQAKIKRLGGYEKLYRIKLEGDYLAKLAFDGAKRIYGDP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
             +++ ++RL+FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS  AY L 
Sbjct: 418  LSEEVKERLNFELYIMKTMGFPGYFLIVQDFINAARSELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+  P   ++L+ AI      + A  + DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R +++D+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRSLEIDVDQIDITDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861
            K   + +   IQ + P VN   + F V  D  I + L A+KGVG    + I+E  + + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVQSIVEERNTNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLE-KFSVENSS--VRFENEQRVLGFYFSGHPLDV 970
              ++++     ++F        D  T E    VE      R   E+ ++G Y S HPLD 
Sbjct: 1018 RYQEDKRAAINSLFG--GANVVDIATPEIPQGVERWGDLERLNKERDLVGIYLSAHPLDE 1075

Query: 971  YKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            +  +L  +        E  A + G  I +  +V S ++  ++ G+  G     + +   E
Sbjct: 1076 FAIVLDHVCNTRMADLEDKAALAGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTE 1135

Query: 1029 ANFF 1032
              F+
Sbjct: 1136 IPFW 1139


>gi|253572097|ref|ZP_04849501.1| DNA polymerase III alpha subunit [Bacteroides sp. 1_1_6]
 gi|251838277|gb|EES66364.1| DNA polymerase III alpha subunit [Bacteroides sp. 1_1_6]
          Length = 1267

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 377/1144 (32%), Positives = 588/1144 (51%), Gaps = 130/1144 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+           
Sbjct: 4    FVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63

Query: 61   ---------------------------KACAAGI--------QPIIGCQLDIDMQD-NLK 84
                                        AC A I        +PIIGC++ +  +  +LK
Sbjct: 64   GEIKDLKKRIAGIEAGTVECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVARRTMDLK 123

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
               +GK P  +   +++L    +GY  LI+LVS  +      +  R   S L+    EGL
Sbjct: 124  ---EGK-PDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRGYYMRP-RTDRSELERY-HEGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQL- 203
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+        +   L 
Sbjct: 178  IVCSACLGGEVPKRITAGQFDEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237

Query: 204  ----------AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                      A  + + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKYLQEYARKYNIKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P                ++ E
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKYTE 357

Query: 298  KECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH-- 333
            K+  D          +  EEE + + K + G E             +LA     + Y   
Sbjct: 358  KDLFDEFTQDENGNVVLSEEEGQAKIKRLGGYEKLYRIKLEGDYLAKLAFDGAKRIYGDP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
             +++ ++RL+FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS  AY L 
Sbjct: 418  LSEEVKERLNFELYIMKTMGFPGYFLIVQDFINAARSELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+  P   ++L+ AI      + A  + DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R +++D+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRSLEIDVDQIDITDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861
            K   + +   IQ + P VN   + F V  D  I + L A+KGVG    + I+E  + + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVQSIVEERNTNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLE-KFSVENSS--VRFENEQRVLGFYFSGHPLDV 970
              ++++     ++F        D  T E    VE      R   E+ ++G Y S HPLD 
Sbjct: 1018 RYQEDKRAAINSLFG--GANVVDIATPEIPQGVERWGDLERLNKERDLVGIYLSAHPLDE 1075

Query: 971  YKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            +  +L  +        E  A + G  I +  +V S ++  ++ G+  G     + +   E
Sbjct: 1076 FAIVLDHVCNTRMADLEDKAALAGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTE 1135

Query: 1029 ANFF 1032
              F+
Sbjct: 1136 IPFW 1139


>gi|298383490|ref|ZP_06993051.1| DNA polymerase III, alpha subunit [Bacteroides sp. 1_1_14]
 gi|298263094|gb|EFI05957.1| DNA polymerase III, alpha subunit [Bacteroides sp. 1_1_14]
          Length = 1267

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 377/1144 (32%), Positives = 592/1144 (51%), Gaps = 130/1144 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+           
Sbjct: 4    FVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63

Query: 61   ---------------------------KACAAGI--------QPIIGCQLDIDMQD-NLK 84
                                        AC A I        +PIIGC++ +  +  +LK
Sbjct: 64   GEIKDLKKRIAGIEAGTVECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVARRTMDLK 123

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
               +GK P  +   +++L    +GY  LI+LVS  +      +  R   S L++   EGL
Sbjct: 124  ---EGK-PDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR-- 196
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+       ++ Y   
Sbjct: 178  IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237

Query: 197  ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  + + A  + + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKYLQEYARKYNIKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P                ++ E
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKYTE 357

Query: 298  KECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH-- 333
            K+  D          +  EEE + + K + G E             +LA     + Y   
Sbjct: 358  KDLFDEFTQDENGNVVLSEEEGQAKIKRLGGYEKLYRIKLEGDYLAKLAFDGAKRIYGDP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
             +++ ++RL+FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS  AY L 
Sbjct: 418  LSEEVKERLNFELYIMKTMGFPGYFLIVQDFINAARSELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+  P   ++L+ AI      + A  + DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R +++D+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRSLEIDVDQIDITDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861
            K   + +   IQ + P VN   + F V  D  I + L A+KGVG    + I+E  + + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVQSIVEERNTNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLE-KFSVENSS--VRFENEQRVLGFYFSGHPLDV 970
              ++++     ++F        D  T E    VE      R   E+ ++G Y S HPLD 
Sbjct: 1018 RYQEDKRAAINSLFG--GANVVDIATPEIPQGVERWGDLERLNKERDLVGIYLSAHPLDE 1075

Query: 971  YKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            +  +L  +        E  A + G  I +  +V S ++  ++ G+  G     + +   E
Sbjct: 1076 FAIVLDHVCNTRMADLEDKAALAGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTE 1135

Query: 1029 ANFF 1032
              F+
Sbjct: 1136 IPFW 1139


>gi|148654277|ref|YP_001274482.1| DNA polymerase III subunit alpha [Roseiflexus sp. RS-1]
 gi|148566387|gb|ABQ88532.1| DNA polymerase III, alpha subunit [Roseiflexus sp. RS-1]
          Length = 1279

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 342/987 (34%), Positives = 539/987 (54%), Gaps = 42/987 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL VHS YSLL+G  + + I  +       +IA+TD   ++  +EF   A  AGI+PI
Sbjct: 4   FVHLHVHSEYSLLDGYAATSAIAARAVELGMDSIALTDHGVMYGVMEFYASAKKAGIKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK---Q 127
           IG +  +        T++G   +     ++LL     GY+ L+ L +R +L   GK    
Sbjct: 64  IGLEAYMAPGSRRDATSRGAKNYY---HLLLLAKDEVGYRNLVRLTTRAHLDGMGKGVFA 120

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
             RI    L++   +GLI+ +   +G + +         A +    ++ L G D  ++ L
Sbjct: 121 RPRIDRELLEQY-HDGLIVTSACIAGEVIQRLTEKQKDQAREIAAWYRDLLGPDNYFLEL 179

Query: 187 QRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-- 242
           Q H       E   ++V++     +PLV TN++ F+  ED EAH +++A+ ++  + +  
Sbjct: 180 QLHENTPELEEINDELVRIGKELGIPLVVTNDTHFVRPEDLEAHKMILALGYNMTLKELC 239

Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
               ++   +++ +  EM   F       LENT  IA RC+  L+     LP     E  
Sbjct: 240 AKNYQMDATYHIMSGEEMWRRFKKYGTTPLENTRRIAERCNLTLEFGRVQLPTIDIPEGH 299

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
           D      + LR     GL  R        G+  ++Y +RL +EL+VI +  F  Y LIV 
Sbjct: 300 DAA----SYLRLVCEEGLMRRF------NGHPPEEYVKRLAYELDVINQTGFPDYMLIVW 349

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D++++A+   IP  P RGS   S+  Y L ITD+DP++  LLFERFL+P+R+ MPD DID
Sbjct: 350 DYVKFARARGIPCLP-RGSAGASLILYCLGITDVDPVKNKLLFERFLSPERLEMPDIDID 408

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           F   RR EV+ Y+  KYG E  AQIIT+G+L AKAALRD+GR L++P ++VDR+ +LIP 
Sbjct: 409 FADSRRHEVLEYIAAKYGRENTAQIITYGTLGAKAALRDIGRVLEIPLNEVDRVARLIPA 468

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P      QA+      ++    +P + RL++ +QK+EG  +   THA G+V+   PL  
Sbjct: 469 LPVGTTIAQALERVPELKQIYTTNPDLARLIDWAQKVEGRMKSVGTHACGVVVSRTPLED 528

Query: 542 LVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599
           +VP+ R  + +  +   F    ++K GL+K D LGL  L+++ ++L+++AQ  G K++L+
Sbjct: 529 IVPLQRTTKDENALMAAFEGPTLQKMGLLKMDVLGLTNLSVVAEALEYIAQTTGRKMELA 588

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP DD + +  L+   T  +FQLES GM + L  ++P  +ED+ A+V+LYRPGP++ I 
Sbjct: 589 DIPLDDPKVFEALSRGETTNVFQLESPGMTRYLMQLKPTRVEDLYAMVALYRPGPLEQIP 648

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
           VY + KN  + I  +HP++ P+L++T GVI+YQEQ+M++ Q ++ Y+L +A ++ +A+ K
Sbjct: 649 VYIHNKNNPQDIKYLHPILKPILEDTYGVIVYQEQIMRLLQEVADYTLGQAYIVIKAISK 708

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K K+ M + + +F  G  + G+++  A  +++L+  FA Y FN+ H+  Y ++SYQTAW+
Sbjct: 709 KDKKLMAENEVKFKQGCLRKGLTQEQADQLWDLILPFAGYSFNRPHSTLYGLLSYQTAWL 768

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----- 834
           K +YPVE++AA +       E I K   + RQ  + ++ P +N   +DF + + R     
Sbjct: 769 KVNYPVEYMAAVLKGAGGVTEDIAKAVNECRQRGVPVLGPDINASALDFTIREFRDPSDG 828

Query: 835 -----IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                I + LAAIK VG      I+ E  A+ PF SL+D C RVD   LN+RVLESL+ A
Sbjct: 829 QIRRGILFGLAAIKNVGAGPIEAILRERDANGPFRSLDDLCERVDRHALNKRVLESLIKA 888

Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
           GALD    +R Q L  LD   +     +KNR     ++F +        I+       N 
Sbjct: 889 GALDPLPGTRRQKLAILDTALEAGARAQKNRETGQIDMFGNIVADTDASISAIPLPTINE 948

Query: 949 SVRFENEQ-----RVLGFYFSGHPLDV 970
           +     EQ      +LG  FS  P  V
Sbjct: 949 TPDDRKEQLAWEKELLGVVFSSDPRKV 975


>gi|302550775|ref|ZP_07303117.1| DNA-directed DNA polymerase subunit III alpha [Streptomyces
            viridochromogenes DSM 40736]
 gi|302468393|gb|EFL31486.1| DNA-directed DNA polymerase subunit III alpha [Streptomyces
            viridochromogenes DSM 40736]
          Length = 1179

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 355/1076 (32%), Positives = 556/1076 (51%), Gaps = 72/1076 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VH+ YSLL+GA  L ++ +         IA++D  NL  A +F   A  AG+ 
Sbjct: 4    PPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMSHIAMSDHGNLHGAYDFFHTAQKAGVT 63

Query: 69   PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVS 117
            PIIG +  +  + + N +    G+ P      +          +    + G   L  L S
Sbjct: 64   PIIGIEAYVAPESRRNKRKIQWGQ-PHQKRDDVSGSGGYTHKTMWAVNSTGLHNLFRLSS 122

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              Y     ++  R+    + +  +EG++  TG  SG +           A K    ++ +
Sbjct: 123  DAYAEGWLQKWPRMDKETIAQW-SEGIVASTGCPSGEVQTRLRLGHFDEALKAAADYQDI 181

Query: 178  FG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG DR ++ L  H     +R    ++++     +P + TN+S +    +  AHD L+ + 
Sbjct: 182  FGKDRYFLELMDHGIEIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEASAHDALLCIQ 241

Query: 236  HSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHA-PI 291
                +S  DR R     +YLK+  EM +I S     E   NT  IA             +
Sbjct: 242  TGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCANTRLIAEMVDTTGMFEKRDL 301

Query: 292  LPRFIEKECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
            +P+F      DI +   E +  R + + G+  R   G         D  +++++E++ I 
Sbjct: 302  MPKF------DIPEGYTEVSWFREETLRGMHRRFPDGI------PDDRMKQVEYEMDTII 349

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M F GYFL+VADFI WAKK  I VGPGRGS AGS+ AYAL ITD+DP+   L+FERFLN
Sbjct: 350  SMGFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYALGITDLDPIPHGLIFERFLN 409

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G+++AK A++D  R L  PY
Sbjct: 410  PERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPY 469

Query: 470  SQVDRLCKLIPND-------------PAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +  DRL K +P D             P HP   +A       R     +P V ++++ ++
Sbjct: 470  AMGDRLTKAMPADVLGKGINLDGITNPEHPRYSEA----GEIRAMYENEPDVKKVIDTAK 525

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             +EGL R    HAAG+++    ++  VP++      + +TQ++    E  GL+K DFLGL
Sbjct: 526  GVEGLVRQMGVHAAGVIMSSETITDHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGL 585

Query: 577  KTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            + LT++  ++  + + +G+ +DL  +P DD  T+ LL    TLG+FQ +   MR  L  M
Sbjct: 586  RNLTIMDDAVKMVKSNKGIDIDLLSLPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLM 645

Query: 636  QPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVI 689
            +PD  EDI A+ +LYRPGP  +++   Y  RKNG+++I  IHP ++  L+E    T G+I
Sbjct: 646  KPDNFEDISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLREVLDVTHGLI 705

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F  GA K G S      +
Sbjct: 706  VYQEQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVLFQEGARKKGFSDEAIQAL 765

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +++L  FA Y FNK+H+AAY ++SY TA++K ++P E++AA +T   D+ +K   +  + 
Sbjct: 766  WDVLVPFAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNEC 825

Query: 810  RQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLED 867
            R+  I+++PP VN    +F   GD+ I + L+A++ VGT     I+    A   + S  D
Sbjct: 826  RRMGIKVLPPDVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIRCRKAKGKYVSFPD 885

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            +  +V++   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F
Sbjct: 886  YLDKVEAVVCNKRTTESLIKAGAFDAMGHTRKGLTAHYEPMIDNVVAVKRKEAEGQFDLF 945

Query: 928  AHEKGTFSDKITLEKFSVE--------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                G   D+ +   F ++        + +     E+ +LG Y S HPL   + IL    
Sbjct: 946  G---GMGEDESSEPGFGLDVEFSPDEWDKTYLLAQEREMLGLYVSDHPLFGLEHILSDKA 1002

Query: 980  IKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              G  +        G+ + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1003 DAGISQLTGGDYSDGSVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|317503779|ref|ZP_07961791.1| DNA-directed DNA polymerase III alpha subunit [Prevotella salivae DSM
            15606]
 gi|315665076|gb|EFV04731.1| DNA-directed DNA polymerase III alpha subunit [Prevotella salivae DSM
            15606]
          Length = 1235

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 373/1114 (33%), Positives = 571/1114 (51%), Gaps = 101/1114 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS-------QKAC 63
            F+HL VH+ YS+L+G   ++ ++DK   +    +A+TD   +F   EF+       +K  
Sbjct: 4    FIHLHVHTYYSILDGQSKISRLVDKAVENGMKGMALTDHGVMFGIKEFADYCAGVNKKRK 63

Query: 64   AAGIQP---IIGCQLDI---DMQDNLKM--TNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            A G++P   I GC++ +    + D +K    N G         +++L     GY+ LI+L
Sbjct: 64   AEGLEPFKPIFGCEMYVAHHRLHDKVKEHGDNSGY-------HLIVLAKNYNGYKNLIKL 116

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS+ ++ D      R   + L++   E LI+ +   +G +         + A +    + 
Sbjct: 117  VSKSWI-DGYYYRPRTDRTELEKY-HEDLIVCSACIAGEVPSKIIKGDLEGAREACEWYH 174

Query: 176  KLFGDRLYVNLQRHRGYD----RYRES---------QVVQLAYTHELPLVATNNSLFLSE 222
            ++FGD  Y+ LQRH   D      RE+          +++ A  + + ++ TN+  F  +
Sbjct: 175  RVFGDDYYLELQRHEVKDPTILANREAFPLQQKANKVLLEFAKEYGIKVICTNDVHFEDK 234

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
            E  EAHD L+ ++    +   +R R +   + K+R EM  +FSD+PEAL NT+EI  +  
Sbjct: 235  ETAEAHDHLLCLSTGKDLDDPNRMRYSKQEWFKSREEMNEVFSDVPEALTNTLEILNKVE 294

Query: 283  FILQVHAPILPRF-------IEKECD------DIQKE------EENEL------------ 311
                 H PI+P F        E+E        D+ KE       EN+L            
Sbjct: 295  HYSIEHGPIMPFFPIPESFGTEEEWKLKFSEADLYKEFTSDENGENQLSPEEGQKVIERL 354

Query: 312  -------RNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVA 361
                   R K  A    +LA     K Y      + ++ ++FEL+V+  M F GYFLIV 
Sbjct: 355  GGYDKIYRIKFEADYLAKLAHDGAKKLYGDPIPSNVQEHINFELHVMKTMGFPGYFLIVQ 414

Query: 362  DFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            DFI  A+   ++ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D 
Sbjct: 415  DFINAARTELDVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDT 474

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  D R +V+R+V +KYGHE  A IIT+ S+  K +++DV R  ++P  + + LCK IP
Sbjct: 475  DFDDDGRGKVLRWVMDKYGHENCAHIITYASMATKNSIKDVARVEKLPLDKSNFLCKAIP 534

Query: 481  NDPAHPVSLQ---AIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGD 536
            +     + +    AI      R+A ++    +R  ++ ++ LEG  R    HA G +I  
Sbjct: 535  DRLPDGLKMNLTNAIKCTPELRDAEVSQDLRERNTIKYAKMLEGTVRGTGIHACGFIICR 594

Query: 537  RPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             P+S  VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   + +
Sbjct: 595  DPISNWVPVSTADDPDYPGFKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVVKK 654

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
             + + VDL  IP DD  TY L     T+G FQ ES GM++ L  + P   ED+IA+ +LY
Sbjct: 655  TKNIDVDLDTIPIDDELTYQLYQQGRTIGTFQFESPGMQKYLRELHPTVFEDLIAMNALY 714

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  +  RKN   ++    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+
Sbjct: 715  RPGPMDYIPDFIKRKNDPTQVSYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGES 774

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D LR+AMGKK K  +D  K +FI   ++NG    I   I+    KFA Y FNKSHA  Y+
Sbjct: 775  DALRKAMGKKKKAIVDAMKPKFIKQGTENGHDPKILEKIWGDWEKFASYAFNKSHATCYS 834

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++YQTA+MK H+P E++AA MT     + +I K  ++ +   I  + P VN    +F V
Sbjct: 835  WVAYQTAYMKAHFPAEYMAALMTRRFSQITEITKLMEECQSMKIATLGPDVNESYSEFGV 894

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                 I + L+AIKG+G   A+ I+ E  A+ PF  + DF  R+D   +NR+  ESL  +
Sbjct: 895  NKRGEIRFGLSAIKGMGEMAAQSIVKEREANGPFKDIYDFAQRIDFSNVNRKAFESLALS 954

Query: 889  GALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            G  D F Y R Q           LD + +Y Q  ++ +     ++F  E      +    
Sbjct: 955  GGFDGFEYRREQYFAPGMKGDVFLDTLVRYGQLYQQEQREARNSLFGGESAVEISRPIPG 1014

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE---SVATIRGNNIRLA 998
            KF   ++  R   E+ ++G Y S HPLD Y  IL+ +      E       ++   I + 
Sbjct: 1015 KFEEWSTIERLNRERDLVGIYLSAHPLDEYGVILKSLCNTHCTELDKKEELVKKEEISIG 1074

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +V   + K T+ G   G+VT  +     E  FF
Sbjct: 1075 GIVTGVKSKFTKTGKPCGFVTIEDFEGSGELAFF 1108


>gi|302518507|ref|ZP_07270849.1| DNA polymerase III subunit alpha [Streptomyces sp. SPB78]
 gi|302427402|gb|EFK99217.1| DNA polymerase III subunit alpha [Streptomyces sp. SPB78]
          Length = 1181

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 362/1079 (33%), Positives = 566/1079 (52%), Gaps = 74/1079 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K+P F HL VH+ YSLL+GA  L ++           IA++D  NL  A +F  +A  AG
Sbjct: 4    KTP-FTHLHVHTQYSLLDGAARLKDMFQACNEMGMTHIAMSDHGNLHGAYDFFHQAKKAG 62

Query: 67   IQPIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIEL 115
            + PIIG +  +  + + N +    G+ P      +          +  + + G   L +L
Sbjct: 63   VTPIIGIEAYVAPESRRNKRKIQWGQ-PHQKRDDVSGSGGYTHKTIWAANSTGLHNLFKL 121

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S  Y     ++  R+    + +  +EGLI  TG  SG +         + A K    ++
Sbjct: 122  SSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQPEEALKAAADYQ 180

Query: 176  KLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             +FG DR ++ L  H G D   R R+  ++++     +P + TN+S +    +  AHD L
Sbjct: 181  DIFGKDRYFLELMDH-GIDIEHRVRDG-LLEIGKKLGIPPLVTNDSHYTYAHESVAHDAL 238

Query: 232  MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVH 288
            + +     +S  DR R     +YLK   EM +I S     E   NT+ +A +        
Sbjct: 239  LCIQTGKNLSDPDRFRFDGTGYYLKTTDEMYAIDSSDAWQEGCRNTLLVAEQIDTTGMFE 298

Query: 289  A-PILPRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               ++P+F I     +I   +E   R     G+E R   G         D +++ ++E++
Sbjct: 299  KRDLMPKFEIPDGFTEITWFQEEVRR-----GMERRYPAGV------PDDRQKQAEYEMD 347

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FER
Sbjct: 348  VIIQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFER 407

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L 
Sbjct: 408  FLNPERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLG 467

Query: 467  MPYSQVDRLCKLIPND-------------PAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             PY+  DR+ K +P D             P HP   +A       R     +P V ++++
Sbjct: 468  YPYAMGDRITKAMPADVLGKGIDLDGITNPTHPRYSEA----GEVRGMYENEPDVKKVID 523

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             ++ +EGL R    HAAG+++   P+    P++     ++ +TQ++    E  GL+K DF
Sbjct: 524  TAKGVEGLVRQMGVHAAGVIMSSEPIIDHAPVWVRHTDNVTITQWDYPQCESLGLLKMDF 583

Query: 574  LGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL+ LT++  ++  + + +G ++DL  I  DD +TY LL    TLG+FQ +   MR  L
Sbjct: 584  LGLRNLTIMDDAVKMVKSNKGRELDLLAIQLDDPKTYDLLCRGDTLGVFQFDGGPMRSLL 643

Query: 633  EGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQ 686
              M+PD  EDI A+ +LYRPGP  +++   Y  RKNG+++I  IHP ++  LKE    T 
Sbjct: 644  RLMKPDNFEDISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEVLGLTY 703

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+I+YQEQV + AQ+++GYSL EAD+LRR MGKK  +E++K    F +GA KNG S    
Sbjct: 704  GLIVYQEQVQKAAQIVAGYSLGEADILRRVMGKKKADELEKNFVLFQAGARKNGYSDEAI 763

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              ++++L  FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   + 
Sbjct: 764  QALWDVLVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAAVLTSVRDDKDKSAVYL 823

Query: 807  QDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDS 864
             + R+  I+++PP VN    +F   GD+ I + L A++ VG      I+ +  A   + S
Sbjct: 824  NECRRMGIRVLPPDVNESLANFAAQGDDVILFGLTAVRNVGQNVVDSIIRSRKAKGKYAS 883

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              D+  +V++   N+R  ESL+ AGA D  G++R  L    + +      V++       
Sbjct: 884  FPDYLDKVEAVVCNKRTTESLIKAGAFDQLGHTRKGLTAQYEPMIDNVVAVKRKEAEGQF 943

Query: 925  NIF--------AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            ++F          E G F   +T      E S +    E+ +LG Y S HPL   + +L 
Sbjct: 944  DLFGGMGDDDGKDEPG-FGLDVTFGDDEWEKSYL-LAQEREMLGLYVSDHPLFGLEHVLS 1001

Query: 977  KMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G  +      G+   + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1002 DKADAGIGQLTGGDFGDGAVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1060


>gi|307331654|ref|ZP_07610761.1| DNA polymerase III, alpha subunit [Streptomyces violaceusniger Tu
            4113]
 gi|306882680|gb|EFN13759.1| DNA polymerase III, alpha subunit [Streptomyces violaceusniger Tu
            4113]
          Length = 1181

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 358/1076 (33%), Positives = 557/1076 (51%), Gaps = 70/1076 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VH+ YSLL+GA  L ++ +         IA+TD  NL  A +F Q+A  AG+ 
Sbjct: 4    PPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMTDHGNLHGAYDFYQQATGAGVT 63

Query: 69   PIIGCQLDIDMQDN-LKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSR 118
            PIIG +  +  +    K   Q   P      +          +  +   G   L  L S 
Sbjct: 64   PIIGIEAYVAPESRRYKRRVQWGQPHQKRDDVSGSGGYTHKTIWAADKTGLHNLFRLSSD 123

Query: 119  MYL----LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
             Y+    +   +        W     +EGLI  TG  SG +           A K    +
Sbjct: 124  AYMEGYFVKWPRMDKETIAQW-----SEGLIASTGCPSGELQTRLRLGQFDEAVKAASEY 178

Query: 175  KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG DR ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIEIERRVRDGLLEVGKKLGIPPLVTNDSHYTYSRESVAHDALL 238

Query: 233  AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHA 289
             V     +S  DR R     +YLK+  EM +I S     E   NT+ +A +         
Sbjct: 239  CVQTGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCRNTLLVAEQIDATGWFEK 298

Query: 290  -PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++PRF   E        + E+R     G+  R   G        +D ++  ++E++VI
Sbjct: 299  RDLMPRFDVPEGYTEVTWFQEEVRK----GMARRFPGGV------PEDRQKLAEYEMDVI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VADFI WAK N I VGPGRGS AGS+ +YA+ ITD+DP+   L+FERFL
Sbjct: 349  IQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVSYAMGITDLDPVEHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYGH++VAQI T+G+++AK A++D  R L  P
Sbjct: 409  NPERVSMPDVDIDFDERRRGEVIRYVTEKYGHDKVAQIGTYGTIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPNDP-AHPVSLQAIADDS--RFREARLA------DPSVDRLLEISQKLE 519
            Y+  DR+ K +P D     + L  I D+   R+ EA         +P V ++++ ++ +E
Sbjct: 469  YAMGDRITKAMPADVLGKGIPLSGITDEKHPRYSEAGEVRGMYENEPDVKKVIDTARGIE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++    ++  VP++        VTQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSETVTDHVPVFSPKNDGQVVTQWDYPTCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  + A +G+ + +  +  DD +T+ LL    TLG+FQ +   MR  L  M+PD
Sbjct: 589  TIMDDAVKMVRANKGIDLKMLDLSLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRMMKPD 648

Query: 639  CIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI A+ +LYRPGP  +++ + Y  RKNG+++I  IHP ++  LKE    T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMNSHINYALRKNGQQEITPIHPELEEPLKEVLGITHGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+L+GYSL +AD+LRRAMGKK +E +DK+   F  G      S      ++++
Sbjct: 709  EQVQKAAQVLAGYSLGQADLLRRAMGKKKQEVLDKEFVPFQKGMRDRDYSDQAIQAVWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVRDDKDKSAVYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870
             I+++PP+VN    +F   GD+ I + L A++ VG      I+    A   + S  D+  
Sbjct: 829  GIKVLPPNVNESEANFTAQGDDVILFGLTAVRNVGQNVVEAIIRGRKAKGKYASFPDYLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AH 929
            +V++   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F   
Sbjct: 889  KVEAVVCNKRTTESLIKAGAFDEMGHTRKGLTAHYEALIDNVVAVKRKEAEGQFDLFGGM 948

Query: 930  EKGTFSDKITLEKFSVENSSVRFE------NEQRVLGFYFSGHPLDVYKPILRKM----- 978
                   +       VE S V +E       E+ +LG Y S HPL   + +L +      
Sbjct: 949  AGDGGDGEGPGFGLDVEFSDVEWEKTYLLAQEREMLGLYVSDHPLFGIEHVLNEKADAAI 1008

Query: 979  -GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + G E +   I    + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1009 SALTGGEHADGAI----VTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1060


>gi|295107511|emb|CBL05054.1| DNA polymerase III, alpha subunit [Gordonibacter pamelaeae 7-10-1-b]
          Length = 1154

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 355/1060 (33%), Positives = 572/1060 (53%), Gaps = 68/1060 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN------NLFSALEFSQKAC 63
            +FVHL  H+ YSLL+G   + +++ + A    PA+AI+D         L    +  ++  
Sbjct: 2    AFVHLHNHTEYSLLDGHTHIYDMVKRAADLGMPAVAISDHGVMSGVPQLCEMCDKVEEET 61

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
               ++PI GC++     + LK    GK   P +  ++LL  T EGY  L++LVS  ++ D
Sbjct: 62   GKRVKPIYGCEVYFTTDEELK--RDGK---PKLYHLLLLAKTNEGYHNLVKLVSESHV-D 115

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI----DRAFFFNSSQVAEKRLLTFKKLFG 179
                  R   S LQ+ G +G+I  +   +G I    D   F ++   A K    F+   G
Sbjct: 116  NFYYKPRTTFSMLQKYG-KGIIGSSACIAGIIPKLLDNRQFDDAVAWANKFASCFEP--G 172

Query: 180  DRLYVNLQRH-----RGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            D  Y+ LQ        G+ +   + ++  +A    L  +ATN+  +L++ED +A D ++ 
Sbjct: 173  D-FYIELQNQGIRTDAGFTQTELNHMLTDVARAAGLKTIATNDFHYLTKEDAKAQDYMLC 231

Query: 234  VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    V+ + R R + D  Y+K+  EM     D PEA + TVE+A +   +L+  + IL
Sbjct: 232  VAQGAAVNDEKRMRFSNDEFYMKSEEEMREALKDFPEACDTTVEVAEKVDVVLERDS-IL 290

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIA 349
            PRF   E +     EE+  R         R  Q  + K Y +   Q+ ++R D+E+ +I 
Sbjct: 291  PRFPLPEGE----TEESYFR---------RRVQEGLVKHYGSPVPQEAQERADYEMGIII 337

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +  F  YFLIV ++I+WA+   I VGPGRGS AG++ AYA+ IT +DPL   LLFERFL+
Sbjct: 338  QQGFPAYFLIVQEYIEWARSQGIGVGPGRGSAAGAIVAYAMDITALDPLSNGLLFERFLS 397

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+ MPD D+DF Q RR+EVI ++++ YG + V+Q+ITFG+LQAK A+RD  R L  PY
Sbjct: 398  PERVEMPDIDVDFEQGRREEVINHIKDVYGEDHVSQVITFGTLQAKNAVRDAARVLDYPY 457

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            +  DR+CKLI ++    +  +A+A +   ++A   +  V  +++ ++ +EG  R    HA
Sbjct: 458  NTGDRICKLIGDELGITID-KALATNPDLKKAYETEEDVKAVIDAAKSIEGHVRGEGVHA 516

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               +I   P++  VPM RD +    +TQ++  +  + GL+K DFLGL+TL +L  +   +
Sbjct: 517  CATIICRDPMADHVPMKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLDVLSIACRNV 576

Query: 590  AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             QR G KV    IP DD   + L+ +    G+FQ+E +        + P    DI+A ++
Sbjct: 577  EQRFGTKVVPEEIPIDDEAAFKLMQSGNMDGLFQVEGALYVSLFARLPPTRFSDIVASIA 636

Query: 649  LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            L RPGP+++ +V  Y    +GK +I      + P+L+ET G ++YQEQ+MQI+  +SG+S
Sbjct: 637  LNRPGPLESGMVDDYVKVASGKTQIHYYDDRLRPILEETYGTMVYQEQIMQISMAMSGFS 696

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
              +AD LR+AMGKK  + M   +E + +GA +NG S  IA  I+E   KFA Y FNKSH+
Sbjct: 697  AGKADKLRKAMGKKKLDVMRALQEDWNTGAVENGFSLAIAKQIWEDAEKFAKYAFNKSHS 756

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++  +TA++K HYP +F+AA ++  M N +++ ++          ++PP +N+   
Sbjct: 757  AAYAILVMRTAYLKAHYPNDFMAAVLSSYMGNTDRLIRYIASCNHNGTPVLPPDINSSNA 816

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            +F   D+ I + L  ++GVG   A  I+E   A+ P+ SL DF +R+D+K  NR+ LE+L
Sbjct: 817  EFTPTDDGIRFGLVGVRGVGANVAEAIIEEREANGPYTSLHDFVNRLDAKCYNRKTLEAL 876

Query: 886  VFAGALDCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLE 941
            +  GA D  GY+R QL+  +D   + + A   +K+R     ++F      F D      E
Sbjct: 877  IKGGAFDSTGYTRKQLMYFVDETPLLESASKRQKDRDRGQVSMF----DLFGDDPDSGFE 932

Query: 942  KFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMG---IKGYEESVATIRG 992
            +   E   V +        E+ ++  Y S HPL  Y+  + +M    +    E    I+ 
Sbjct: 933  EEVPEPDGVEWPKRQLLSYEKEIMKIYVSDHPLRPYEGTIARMTKFQLGDLAERTKEIK- 991

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +     M+ +   K T++G+++   T  +     E   F
Sbjct: 992  -SATFVGMISTVVTKLTKRGTKMATFTLEDTTGHIECICF 1030


>gi|116333410|ref|YP_794937.1| DNA polymerase III, alpha subunit [Lactobacillus brevis ATCC 367]
 gi|116098757|gb|ABJ63906.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus brevis
            ATCC 367]
          Length = 1121

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 366/1045 (35%), Positives = 559/1045 (53%), Gaps = 81/1045 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV LQV S+YSLL+    +++++         A+A+ D N ++ A+ F      A I+P+
Sbjct: 2    FVPLQVFSTYSLLQSTNRIDDLVQTAKKRGYTALALADKNVMYGAVAFYNACRQADIKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G          L +T QG          V L     GYQ+L++L S  Y +  G     
Sbjct: 62   LG----------LTLTAQGLNDATQAYDWVFLAQNFTGYQQLMQL-STAYQVGGGP---- 106

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF---GDRLYVNLQ 187
            + L+ L    T+ L  LT     P+D       + VA  +L   +++     D     L 
Sbjct: 107  VDLTQL----TKNLSQLT--MIAPLDSEI---HTLVANDQLAPAQQILHQLNDWSVGQLA 157

Query: 188  RHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKD 244
                 D    S+  +  L+     PLVA +   +L+ +D+ A  VL A+ A  T+     
Sbjct: 158  IGVSPDLTAVSRDHLQSLSQATTTPLVALSPVAYLNRDDHFAVTVLRAIDAGETISDPTT 217

Query: 245  RPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              +V   H+L+  +E    F++  L  A+  T  IA   +    V        + +    
Sbjct: 218  EQQVQGTHWLRPAAEETQRFANVGLTAAVTMTASIAAAST----VTLQFQQPQLPQFPTP 273

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             Q+   + LR + VAGL+ RL    I     A  Y+QRLD EL VI RM F  YFLI+ D
Sbjct: 274  NQENSRDYLRERCVAGLKRRLTANHITD---ATPYQQRLDHELGVIHRMGFDDYFLIIWD 330

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             + +A + NI  GPGRGS AGS+ AY L IT++DPL + LLFERFLN +R  MPD D+D 
Sbjct: 331  VMNFAHQANIQTGPGRGSAAGSLVAYVLAITEVDPLAYDLLFERFLNEERAQMPDIDLDI 390

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR++V++YV +KYGHERVAQIITFG+L AKAALRDVGR L M   ++      IP +
Sbjct: 391  PDNRREQVLQYVHDKYGHERVAQIITFGTLAAKAALRDVGRVLGMAPYELSDWSAAIPAE 450

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
              H ++LQ   D S+     +AD S ++LL   +QKLEGL RH STHAAGIV+  +PL  
Sbjct: 451  -LH-ITLQRAYDQSQRLRNLVADSSRNQLLFATAQKLEGLPRHYSTHAAGIVLSQKPLRD 508

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSL 600
            LVP+ +    +L +TQ+    +E  GL+K DFLGL+ L++L  +L  +  Q G  VDL+ 
Sbjct: 509  LVPL-QPGSEELLMTQYPKDTVEAVGLLKMDFLGLRNLSILANALALVKKQTGKIVDLNQ 567

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            I  +D  T  L  T  T G+FQ ESSG+++ L  +QPD  E + A+ +LYRPGP++NI  
Sbjct: 568  IDLNDPATLKLFATGETNGVFQFESSGIKRVLRQLQPDSFELVAAVNALYRPGPMENIDT 627

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RKNG+E +      + P+L  T GV++YQEQVMQ+A ++ G++L +AD+LRRAM KK
Sbjct: 628  FIRRKNGQEPVTYPADALAPILGPTYGVLVYQEQVMQVASVMGGFTLGQADLLRRAMSKK 687

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K+ MD  +++F++GA + G    +A  +F  + +FA+YGFN+SHA AY+ +++Q A++K
Sbjct: 688  KKQTMDAMQKQFVAGAQQRGYELAVAQRVFAYIDRFANYGFNRSHAVAYSKLAFQLAYLK 747

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYP  F A+ M   ++   K K +  +A++  + ++PP +N     F +  + I + L+
Sbjct: 748  AHYPAAFYASLMNSVINVGAKTKVYLTEAKRHGVTVLPPDINRSTAYFNLYHSAIIFGLS 807

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            +IKGV     R ++ E     PF  L  F  R+ SK     +L +LV+AGA D FG++R 
Sbjct: 808  SIKGVRRDFLREVLAERHEHGPFKDLHQFLERIASKYRKADLLNALVYAGAFDHFGHNRA 867

Query: 900  QLLQSL-----------DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            +L+ +L           DN++  A    K ++    ++                      
Sbjct: 868  ELIAALPEFISSVELSGDNVELIAALAPKIKSQPDLDLM--------------------- 906

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              +   E+ VLG Y SGHP++ Y+ + R++  +   E  A  R   + +   V+  +Q +
Sbjct: 907  -TKLSQEEAVLGAYLSGHPVEQYQQLGRQLQAQAVSELTANTR---VTVLLYVIKIRQIR 962

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T++G  + +VT S+   +     FP
Sbjct: 963  TKRGEPMAFVTGSDETADVSVTIFP 987


>gi|81428645|ref|YP_395645.1| DNA-directed DNA polymerase III, alpha subunit [Lactobacillus sakei
            subsp. sakei 23K]
 gi|78610287|emb|CAI55336.1| DNA-directed DNA polymerase III, alpha subunit [Lactobacillus sakei
            subsp. sakei 23K]
          Length = 1110

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 357/1030 (34%), Positives = 568/1030 (55%), Gaps = 52/1030 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV LQV S+Y+LLE    + +++    A    ++A+TD N ++  ++F + A AA I+P
Sbjct: 2    AFVQLQVKSTYTLLESTTKITDLVTAAKARGYQSLALTDKNVVYGLVDFYKAAKAADIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G  +++     L  T++    FP    ++LL     GYQ ++++ +++       QS 
Sbjct: 62   LLGITIEVG---GLIQTDER---FP----LILLAKNLTGYQNILKISTKIM-----TQSE 106

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             +    +Q +  + L+++T    G + R    N +  A+  +   K +   D LY+ +  
Sbjct: 107  LVPFEAVQSL-LQQLVVITPSQDGELVRLLLQNDATAAQTYIERLKAVVDADSLYLGISA 165

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +   R R   + QL+    +PLVA  +  +L  ED  A  VL  +   T V+ +  P+ 
Sbjct: 166  KQAASRQRVP-LGQLSQQTAVPLVALGDVRYLEPEDAFAVQVLQHIKAGTQVNLQT-PQA 223

Query: 249  TPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               ++L++  +  + F    L EA+ NT +IA +C   L      LP+F         + 
Sbjct: 224  PGGYFLEDVQQATAAFEALQLAEAVANTQKIAAQCQVDLSFKRAQLPQFETPAG----QS 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+ ++ AGL+ R     I      + Y+ RLD+EL VI  M F+ YFLIVAD +Q+
Sbjct: 280  AATYLKQQSQAGLQARFKTQPIP-----ETYQTRLDYELQVINEMGFADYFLIVADVMQY 334

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A + NI  GPGRGS AG++ AYAL ITD+DP+R+ LLFERFLNP+R +MPD D+D   +R
Sbjct: 335  AHQQNIMTGPGRGSAAGALVAYALRITDVDPIRYQLLFERFLNPNRANMPDIDLDIPDNR 394

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEV+ YV  KYG   +AQIITFG+L AK AL+DVGR   +   ++    K IPN     
Sbjct: 395  RDEVLDYVYQKYGQNHMAQIITFGTLAAKMALKDVGRVFGLSQFEMSAWSKAIPN--VLK 452

Query: 487  VSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++LQ   D S+  +  +AD   +RLL E +Q++EGL RH STHAAGIV+   PL++ V +
Sbjct: 453  ITLQEAYDQSQAFKNLVADSQQNRLLFETAQRIEGLPRHYSTHAAGIVLSQAPLTETVAL 512

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             +    ++ +TQ  M  +E+ GL+K DFLGL+ L +L   +  ++Q+ G   +   IP D
Sbjct: 513  -QSGGDEIELTQLPMGNVEELGLLKIDFLGLRNLGILANIVKLVSQQTGQPFNPQNIPLD 571

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  T  L     T GIFQ ES+G++  L  ++P   EDI+A  +LYRPGP++NI  + +R
Sbjct: 572  DPATLALFQQGDTNGIFQFESTGIKNVLRRLKPTSFEDIVATDALYRPGPMENIDTFIDR 631

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK  +      +  +L+ T G+++YQEQVMQ A  + G++L EAD+LRRAM KK K  
Sbjct: 632  KSGKVPVTYPDDSLAEILQPTYGILVYQEQVMQAASKMGGFTLGEADILRRAMSKKKKAV 691

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D  + +FI GA   G ++  A  +++ + +FA+YGFN+SHA AY+ I++  A++K H P
Sbjct: 692  IDASRTKFIEGALALGHTEQAATTVYDYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHQP 751

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
              F AA +   ++   K K +  +A++  + ++PP +N     FKV D  I + L +IKG
Sbjct: 752  EAFFAAVLNAVLNQGTKTKTYLAEAKKRQLSVLPPDINLSQRYFKVTDAGIIFGLYSIKG 811

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +       I+ E     PF S+  F  R+D+K L +  L +L+++GA D F  +R  LL 
Sbjct: 812  LRRDFVAAILDEHQTGGPFKSVLQFLQRLDAKYLKKEALVALIYSGAFDQFNPNRNALLM 871

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            +LD++    +    N +     I A ++ T S+ +TL +        R + E   LG Y 
Sbjct: 872  NLDDLLDSVKLAGDNMS--LFEILAPKEKTVSN-LTLTE--------RLDKEAEYLGAYL 920

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            SGHP++ Y+ + R   +      V+ +  N N+RL   V   +  +T+KG ++ +VT  +
Sbjct: 921  SGHPVEKYERVRRYYHVP----EVSDLAPNQNVRLVLFVRRIKVIRTKKGEQMAFVTGQD 976

Query: 1023 PAKEYEANFF 1032
               E     F
Sbjct: 977  ATGEISVTLF 986


>gi|212693673|ref|ZP_03301801.1| hypothetical protein BACDOR_03193 [Bacteroides dorei DSM 17855]
 gi|237708836|ref|ZP_04539317.1| DNA polymerase III alpha subunit [Bacteroides sp. 9_1_42FAA]
 gi|237724269|ref|ZP_04554750.1| DNA polymerase III alpha subunit [Bacteroides sp. D4]
 gi|265755905|ref|ZP_06090372.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_33FAA]
 gi|212663785|gb|EEB24359.1| hypothetical protein BACDOR_03193 [Bacteroides dorei DSM 17855]
 gi|229437457|gb|EEO47534.1| DNA polymerase III alpha subunit [Bacteroides dorei 5_1_36/D4]
 gi|229457262|gb|EEO62983.1| DNA polymerase III alpha subunit [Bacteroides sp. 9_1_42FAA]
 gi|263233983|gb|EEZ19584.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_33FAA]
          Length = 1265

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 364/1144 (31%), Positives = 595/1144 (52%), Gaps = 131/1144 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            FVHL VH+ YS+L+G  S+  ++DK  AD    IA+TD  ++F   EF            
Sbjct: 4    FVHLHVHTQYSILDGQASIPRLVDKAMADGMKGIAVTDHGDMFGIKEFFNYVNKKNSSTN 63

Query: 61   ------KACAAGIQ-----------------------------PIIGCQLDIDMQDNLKM 85
                  K   AG++                             PI GC++ +  +   ++
Sbjct: 64   GEIKDLKKRIAGLEKGTVECDNPEAELVACKEKLEAAKRKLFKPIFGCEMYVARR---RL 120

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--LDQGKQSVRICLSWLQEIGTEG 143
             N+   P  +   +V+L    +GY  LI+LVS+ +        ++ R+ L    E   EG
Sbjct: 121  FNKEGKPDQSGYHLVVLAKNEKGYHNLIKLVSKAWTEGFYMRPRTDRVEL----EKYHEG 176

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYRE 197
            LI+ T   +G + R       + AE+ +  +K++FGD  Y+ LQRH+       ++ Y+ 
Sbjct: 177  LIVCTACIAGEVPRNIIAGKYEEAEEAIQWYKRVFGDDFYLELQRHKATVPRANHEAYKL 236

Query: 198  SQV-----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
             Q+     ++ +    + LV TN+  F+ EE+ EAHD L+ ++    +   +R   +   
Sbjct: 237  QQIANEKLIEYSRKFNVKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYSKQE 296

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFI 296
            ++K R+EM  +F+D+PEAL NTV+I  +  F    HAPI+P                ++ 
Sbjct: 297  WMKTRAEMNEVFADVPEALSNTVDICDQVEFYSIDHAPIMPTFAIPEDFGTEEGYRKKYT 356

Query: 297  EKECDD----------IQKEEENELRNKAVAG--------LEVRLAQGAIAKGYHA---- 334
            EK+  D          +  EE  + + + + G        LE    +    +G H     
Sbjct: 357  EKDLFDEFTQDENGNVVMSEEAAKAKIEKLGGYDKLYRIKLEADYLKKLALEGAHKRYGE 416

Query: 335  ---QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYAL 390
               ++ ++R+ FEL+++  M F GYFLIV DFI+ A++  ++ VGPGRGS AGS  AY L
Sbjct: 417  VLNEEVQERIKFELHIMKTMGFPGYFLIVQDFIRAAREELDVSVGPGRGSAAGSAVAYCL 476

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             IT IDP+ + LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA IIT+G
Sbjct: 477  GITKIDPIAYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAHIITYG 536

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPS 507
            ++  K A++DV R  ++P S+ DRLCKL+P+  P   ++L  AIA     + A ++ DP 
Sbjct: 537  TMATKLAIKDVARVQKLPLSESDRLCKLVPDKIPDKKMNLTNAIAYVPELQAAEVSPDPI 596

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWI 563
            +   ++ ++ LEG  R+   HA G +I    ++  VP+     ++    + VTQ+    I
Sbjct: 597  LRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVI 656

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            E  GLIK DFLGLKTL++++++++ +   +G+ +D+  +   D  TY L +   T+G FQ
Sbjct: 657  EDTGLIKMDFLGLKTLSIIKEAIENIKHSKGIILDIDEVDISDPPTYALYSEGRTIGTFQ 716

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
             ES+GM++ L  ++P   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  L
Sbjct: 717  FESAGMQKYLRELEPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPIMEKYL 776

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            K+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG  
Sbjct: 777  KDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHD 836

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA+M+  + N+ +I
Sbjct: 837  PKVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAATMSRNISNITEI 896

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEA-SA 858
             K   +++   I    P VN   + F V   GD  I + L AIKGVG +  + I+E    
Sbjct: 897  TKLMDESKATGIMTKGPDVNESYLKFSVNRKGD--IRFGLGAIKGVGESAVQSILEERER 954

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQK 910
            +  +  + DF  RV+    NR+ +E+L  AGA D F G  R              + + +
Sbjct: 955  NGEYKDIFDFVQRVNLSACNRKNIENLALAGAFDSFTGIKREDFFVKNAKDETFTEVLVR 1014

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            Y    + ++     ++F  E         +          R   E+ ++G Y S HPLD 
Sbjct: 1015 YGNKYQMDKAAAANSLFGGENQVDIATPEIIPSPAWGDLERLNKERDLVGIYLSAHPLDE 1074

Query: 971  YKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            Y  IL  +      E   +  ++  ++ +  +V + ++  T+ G   G     + +   E
Sbjct: 1075 YAVILENVCNVHMAELADLTPLQNRDLTMGGIVSAVREGYTKTGKPYGIAKVEDYSGSAE 1134

Query: 1029 ANFF 1032
              FF
Sbjct: 1135 FAFF 1138


>gi|219849373|ref|YP_002463806.1| DNA polymerase III subunit alpha [Chloroflexus aggregans DSM 9485]
 gi|219543632|gb|ACL25370.1| DNA polymerase III, alpha subunit [Chloroflexus aggregans DSM 9485]
          Length = 1260

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 370/1059 (34%), Positives = 549/1059 (51%), Gaps = 56/1059 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G  +   I+ + A     +IA+TD   L+ A+EF + A  AGI+PI
Sbjct: 4    FVHLHVHSEYSLLDGYATTKGIVQRAADLGMDSIALTDHGVLYGAMEFYEAAKKAGIRPI 63

Query: 71   IGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK- 126
            IG +  I    + D   MT   K  F     ++LL     GY+ L++L +R +L   GK 
Sbjct: 64   IGVEAYIAPGSLSD--PMTKGAKNYF----HLLLLAQNETGYRNLVKLTTRAHLDGMGKG 117

Query: 127  --QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 RI    L E   EGLI+ +   +G +           A +    ++ L G DR Y
Sbjct: 118  VFARPRIDRHLL-ETYHEGLIVTSACVAGELLHHLKHGDRHTAVETAAYYRDLLGPDRYY 176

Query: 184  VNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQ H           ++V++A    +PLVAT+++ F+  ED E    +MA+  +   +
Sbjct: 177  IELQLHDNTPELEPLNDELVRIARELGIPLVATSDAHFIHPEDKETQHKVMAMGMNMTYA 236

Query: 242  QKDRPRVTPD--HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +        D  +++ +   M + F     E LENT  I+  C   L+     LP F   
Sbjct: 237  EFCTRGYAMDESYHIMSGEAMWARFKRYGTEPLENTRRISDMCRLKLEFGRVQLPVFELP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E  D      + LR     GL  R        G   + Y +RL++EL+VI +  F  Y L
Sbjct: 297  EGHDAA----SYLRLVCEEGLMRRF------NGQPPETYLRRLEYELDVINQTGFPDYML 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV D++++A+   IP  P RGS   S+  YAL ITD+DP++  LLFERFL+P+R+ MPD 
Sbjct: 347  IVWDYVKFARSRGIPCLP-RGSAGASLVLYALGITDVDPVKNKLLFERFLSPERLEMPDI 405

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF   RR E++ Y+ NKYG E VAQIIT+G+L AKAA+RD+GR L +   +VDR+ KL
Sbjct: 406  DTDFADSRRQEILDYIANKYGRENVAQIITYGTLGAKAAIRDMGRVLGLDPGEVDRVAKL 465

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP+ P      QAI      ++     P +  LL  +QK+EG  R   THA G+V+   P
Sbjct: 466  IPSLPVGTTIAQAIERVPELKQIYETQPHLRELLIEAQKVEGRMRSVGTHACGVVVSRTP 525

Query: 539  LSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKV 596
            L +LVP+ R  + +  +   F    + K GL+K D LGL  L+++ ++L ++ Q  G ++
Sbjct: 526  LEELVPLQRTTKDEHALMAAFEGATLAKMGLLKMDILGLTNLSVVAEALKYIEQTTGRRM 585

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             L  IP DD + +  L    T  +FQLES+GM + L  +QP  +ED+ A+V+LYRPGP++
Sbjct: 586  WLDEIPLDDPKVFAALGRGETKNVFQLESAGMTRYLMQLQPTRVEDLYAMVALYRPGPLE 645

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I VY   K+   +I  +HP+++P+L +T GVI+YQEQ+MQ+ Q ++ Y+L +A ++ +A
Sbjct: 646  QIPVYIQNKHNPSQIRYLHPVLEPILSDTYGVIVYQEQIMQLLQTVADYTLGQAYIVIKA 705

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + KK KE M + +  F  G  + GISK +A  ++EL+  FA Y FN+ HA  Y ++SYQT
Sbjct: 706  ISKKNKELMAENEAIFKQGCQRKGISKEVADQLWELILPFAGYSFNRPHATLYGLLSYQT 765

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----- 831
            AW+K +YPVE++ A +T     +E + K   +AR+  + ++PP VN     F +      
Sbjct: 766  AWLKVNYPVEYMTAVLTGAGGVIEDVTKAALEARRLGVAVLPPDVNRSHKGFTIEPLSPP 825

Query: 832  -------DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLE 883
                   D  I + L AIK VG      I+ A  A  PF SLED C+RVD   LN+R LE
Sbjct: 826  LPEGVKYDRGIRFGLMAIKNVGEGPVEAIIAAREAGGPFRSLEDLCARVDRHALNKRTLE 885

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDK---- 937
            SL+ AGALD    SR Q L  LD         +K R     ++F    E  T S      
Sbjct: 886  SLIKAGALDSLPGSRRQKLAILDQAINAGVEAQKARDIGQSSLFDIFGESNTGSPNVARI 945

Query: 938  ---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
               I  E  + +   +R+E E  +LG   S  P+      +   G+           G  
Sbjct: 946  PLPIITETPAEQKEVLRWEKE--LLGLNLSDDPIAKALEGIDLTGVTDLGSLEEEHVGET 1003

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +    ++   ++  T+KG  +   T  +     E   FP
Sbjct: 1004 LTFVGVLSGVRRIATKKGDSMVVATLEDMTGSIEIVVFP 1042


>gi|302526214|ref|ZP_07278556.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4]
 gi|302435109|gb|EFL06925.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4]
          Length = 1174

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 365/1075 (33%), Positives = 568/1075 (52%), Gaps = 69/1075 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PSFVHL VH+ YS+L+GA  +  +  + A    PA+ +TD  N++   EF Q +   GI+
Sbjct: 2    PSFVHLHVHTEYSMLDGAAKIGPLFAEAARLGMPAVGMTDHGNMYGGDEFFQTSKKHGIK 61

Query: 69   PIIGCQLDIDMQDNL--------KMTNQGKTPFP---------TVPSIVLLVSTAEGYQR 111
            PIIG +  +  +           + + +G   F              + ++   A G + 
Sbjct: 62   PIIGIEAYVAPESRFHKKPVFWGQASQRGSDEFGEGGDVSGGGAYTHMTMVAGNATGLRN 121

Query: 112  LIELVSRMYLLDQGK-QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
            L +L S   +  QG  +  R+    + E   EG+I  TG  SG +         + A + 
Sbjct: 122  LFKLSSLASI--QGYYRKPRMDRELIAE-NAEGIIATTGCPSGEVQTRLRLGQREAAIQA 178

Query: 171  LLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
               +K +FG    Y+ L  H    +R     ++++    +LP +ATN+S +++++  + H
Sbjct: 179  ASDYKDIFGAGNFYLELMDHGLPIERSVREGLLEIGKLLDLPPLATNDSHYVTKDQADTH 238

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHY-LKNRSEMVSIFS-DLPEALENTVEIARRCSFILQ 286
              L+ V     ++   R +   D Y LK+  EM   +  ++P A +NT+ IA R      
Sbjct: 239  SALLCVQAGKTLNDPTRFKFDGDGYFLKSAQEMREYWDKEVPGAADNTLLIAERVESYED 298

Query: 287  V--HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            V  H   +P F   E       E   L ++ ++GLE RL  G         +YR+R ++E
Sbjct: 299  VYAHKDRMPVFDVPEG----HTEATWLHHEVMSGLEHRLPDGV------PDEYRERAEYE 348

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L VI    F GYFLI AD +  A++  I VGPGRGS AGS+ AYAL IT++DP+R  LLF
Sbjct: 349  LEVIVEKGFPGYFLITADLMTHAREAGIRVGPGRGSAAGSLVAYALRITNLDPIRHGLLF 408

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DF   RR E+IRY   KYG +R+AQ+ITFG+++ KAA++D  R 
Sbjct: 409  ERFLNPERVSMPDIDMDFDDRRRGEMIRYATEKYGSDRIAQVITFGTIKTKAAIKDSARV 468

Query: 465  L--QMPYSQVDRLCKLIPND-PAHPVSLQAIADDSRFREARLA--------DPSVDRLLE 513
               Q  Y+  DR+ K +P    A  + L  I D    R A  A        D     + E
Sbjct: 469  HFGQPGYAIADRISKALPPPVAAKDIPLSGIVDAKHERYAEAAEVRALVETDEECKTIFE 528

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             ++ LEGL R+A  HA  +++   PL   +P++R     + +T ++    E  GL+K DF
Sbjct: 529  TARGLEGLIRNAGVHACAVIMSSEPLLNAIPLWRRDDGSI-ITGWDYPSCEAIGLLKMDF 587

Query: 574  LGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL+ LT++  ++D + A RG  +DL  +  DD ET+ LL    +LG+FQL+   MR  L
Sbjct: 588  LGLRNLTVIGDAIDNIQANRGEDIDLDRLAIDDPETFALLVRGDSLGVFQLDGGAMRDLL 647

Query: 633  EGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQ 686
              M+P   EDI+A+ +LYRPGP  ++    Y +RKN ++ I  IHP L +P+   L ET 
Sbjct: 648  RRMRPTGFEDIVAVNALYRPGPMAMNTHNNYADRKNKRQAIEPIHPELEEPLREILAETH 707

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+++YQEQ+MQIAQ ++GYS+  ADVLRRAMGKK KE ++K+ E F +G   NG S    
Sbjct: 708  GLVVYQEQIMQIAQKVAGYSMGRADVLRRAMGKKKKEVLEKEFEGFRAGMIDNGFSAEAV 767

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++ +  FA Y FNKSHAA YA++ Y TA++K +Y  E++AA +T   DN +K   + 
Sbjct: 768  QALWDTILPFAGYAFNKSHAAGYALVGYWTAYLKANYTAEYMAALLTSVGDNKDKSAIYL 827

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSL 865
             + R+  I+++PP VN   + F    N I + L A++ VG      I++   +K  + S 
Sbjct: 828  SECRRLGIKVLPPDVNESALRFAAVGNDIRFGLGAVRNVGANVVESIIKTREEKGKYSSF 887

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DF  + +    N+RV+ESL+ AGA D  G++R+ ++Q  ++  +    +++       +
Sbjct: 888  TDFLDKSELVACNKRVIESLIKAGAFDSMGHTRLSMIQVHEDAVEAVVPLKRQEAMGQFD 947

Query: 926  IFAHE-KGTFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
            +F  E +   S  +   KF+ E    +     E+ +LG Y S HPLD  + +LRK   + 
Sbjct: 948  LFGGESEEPASSPLAHVKFTAEEWPRKQLLAQERDMLGLYVSAHPLDGAEGVLRKHAPR- 1006

Query: 983  YEESVATIRGN-----NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A I  N      + +A ++ S +++  +KG      T  +     E  FF
Sbjct: 1007 ---PIAAIIDNPPKEGELVVAGLITSLERRVNKKGEPWAICTVEDLDASLEVLFF 1058


>gi|294674564|ref|YP_003575180.1| DNA polymerase III subunit alpha [Prevotella ruminicola 23]
 gi|294473595|gb|ADE82984.1| DNA polymerase III, alpha subunit [Prevotella ruminicola 23]
          Length = 1243

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 374/1109 (33%), Positives = 569/1109 (51%), Gaps = 105/1109 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----------Q 60
            FVHL VH+ YS+L+G  S+  ++DK   D    +AITD  ++F   EF           +
Sbjct: 4    FVHLHVHTYYSILDGQSSIKKLVDKAIGDGMKGMAITDHGDMFGIKEFHDICNGVNKQRK 63

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            K      +PI GC++ +  + ++ M  +GK        +++L     GY+ LI+LVS  +
Sbjct: 64   KDGLEPFKPIFGCEMYVARRGDM-MLKEGKEDLGGY-HLIVLAKNEHGYKNLIKLVSNSW 121

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            + D      R     L++   E LI+ +   +G +         + A K +   K L+GD
Sbjct: 122  V-DGFYNRPRTDHKQLEKY-HEDLIVCSACIAGEVPAKILKGDIEGARKAIEWHKNLWGD 179

Query: 181  RLYVNLQRHRGYD----RYRES---------QVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              Y+ LQRH   D      RE+          +++LA  + + LV TN+S F+ +E+ EA
Sbjct: 180  DYYLELQRHEVTDPNIRANRETFPLQQQANKVLIELAKEYGVKLVCTNDSHFVDKENAEA 239

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            HD L+ +A    +    R   +   + K + EM  IFSD+PEAL NTVEI  +       
Sbjct: 240  HDHLLCLATGKDLDDPTRMLYSKQEWFKTQQEMNDIFSDVPEALANTVEILNKVETYSLD 299

Query: 288  HAPILP----------------RFIEKECDDIQKEEEN----------ELRNKAVAGLE- 320
              PI+P                +F E++  +    +EN          E + K + G + 
Sbjct: 300  ADPIMPFFPIPESFGTEEEWRQKFTEQQLFEEFTTDENGENPLDPEAAEKKIKKLGGYDK 359

Query: 321  -----------VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                        +LA     + Y     +D  +R+ FEL+++  M F GYFLIV DFI  
Sbjct: 360  IYRIKFEADYLAKLAYEGAERRYGNPIPKDVEERVKFELHIMKTMGFPGYFLIVQDFINS 419

Query: 367  AKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            A+    + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+S+PD D DF  D
Sbjct: 420  ARDELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRISLPDIDTDFDDD 479

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN---- 481
             R +V+++V +KYGHE  A IIT+ S+  K +++DV R   +P +  + LCK IP+    
Sbjct: 480  GRGKVLKWVMDKYGHENCAHIITYASMATKNSIKDVARVENVPLAISNALCKAIPDRLPE 539

Query: 482  -DPAHPVS--LQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
             D   P      AI      +EA  + DP +   ++ ++ LEG  R    HA G +I   
Sbjct: 540  VDGKTPKMNLTNAIKAVPELQEAEASTDPHIANTMKYAKMLEGTVRGTGIHACGFIICRD 599

Query: 538  PLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
            P+S  VP+      D        TQ++   IE  GLIK DFLGLKTL+ L+++   + + 
Sbjct: 600  PISDHVPVSTADDPDFKGTKTNCTQYDGHVIESTGLIKMDFLGLKTLSELKEACANIKRT 659

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            RG+ VDL  IP DD +TY L     T+G FQ ES GM++ L  + P   ED+IA+ +LYR
Sbjct: 660  RGIDVDLDTIPIDDPKTYELYQQGRTVGTFQFESQGMQKYLRELHPTVFEDLIAMNALYR 719

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+D I  +  RKNG+E I      ++  LK+T G+ +YQEQVM +++ L+ ++  E+D
Sbjct: 720  PGPMDYIPSFIARKNGREPITYDIDCMEKYLKDTYGITVYQEQVMLLSRQLADFTRGESD 779

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             LR+AMGKK K+ +D  K +FI G  KNG    +   I+    KFA Y FNKSHAA Y+ 
Sbjct: 780  ALRKAMGKKKKDIVDAMKPKFIEGGKKNGHDPKVLEKIWADWEKFASYAFNKSHAACYSW 839

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K +YP E++AA M+   D + +I K   + +Q  I  + P VN     F V 
Sbjct: 840  VAYQTAYLKANYPAEYMAAIMSRRRDQITEITKLMDECKQMGIATLGPDVNESYEKFGVN 899

Query: 832  DN-RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +  I + L AIKG+G + A  I+ E   + P+  + DF  RV+   +NR+  ESL  +G
Sbjct: 900  HHGEIRFGLGAIKGMGDSAALSIIDEREKNGPYKDIYDFAQRVNFSAVNRKAFESLALSG 959

Query: 890  ALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
              D FG  R             ++ + +Y Q  ++ +     ++F    G F + + + +
Sbjct: 960  GFDSFGIRREDYFAKNPKGETFIEMLCRYGQLYQQEQAEMKNSLF----GMFGEGVEIAQ 1015

Query: 943  FSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGIKGYEE--SVATIRG-N 993
                 + +R+ +      E+ ++G Y S HPLD YK IL  +      E   +A +    
Sbjct: 1016 PQPPKNDIRWSDIERLNKERELVGIYLSAHPLDEYKIILDNLCNTKCTELADIAKLADRE 1075

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            ++ L  +V +++   T+ G   G VT  +
Sbjct: 1076 DVILGGIVTAQKTGFTKTGKPYGVVTIED 1104


>gi|15608685|ref|NP_216063.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis H37Rv]
 gi|15841014|ref|NP_336051.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis CDC1551]
 gi|31792733|ref|NP_855226.1| DNA polymerase III subunit alpha [Mycobacterium bovis AF2122/97]
 gi|121637469|ref|YP_977692.1| DNA polymerase III subunit alpha [Mycobacterium bovis BCG str.
            Pasteur 1173P2]
 gi|148661343|ref|YP_001282866.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis H37Ra]
 gi|148822771|ref|YP_001287525.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis F11]
 gi|167968102|ref|ZP_02550379.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis H37Ra]
 gi|215411208|ref|ZP_03420016.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis
            94_M4241A]
 gi|215426890|ref|ZP_03424809.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis T92]
 gi|215430440|ref|ZP_03428359.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis EAS054]
 gi|215445744|ref|ZP_03432496.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis T85]
 gi|218753267|ref|ZP_03532063.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis GM 1503]
 gi|219557457|ref|ZP_03536533.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis T17]
 gi|224989943|ref|YP_002644630.1| DNA polymerase III subunit alpha [Mycobacterium bovis BCG str. Tokyo
            172]
 gi|253799398|ref|YP_003032399.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            KZN 1435]
 gi|254231775|ref|ZP_04925102.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis C]
 gi|254364418|ref|ZP_04980464.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis str. Haarlem]
 gi|254550566|ref|ZP_05141013.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis '98-R604
            INH-RIF-EM']
 gi|260186497|ref|ZP_05763971.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis CPHL_A]
 gi|260200607|ref|ZP_05768098.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis T46]
 gi|260204831|ref|ZP_05772322.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis K85]
 gi|289443001|ref|ZP_06432745.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            T46]
 gi|289447158|ref|ZP_06436902.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            CPHL_A]
 gi|289554661|ref|ZP_06443871.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            KZN 605]
 gi|289569583|ref|ZP_06449810.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            T17]
 gi|289574231|ref|ZP_06454458.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            K85]
 gi|289750114|ref|ZP_06509492.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            T92]
 gi|289753634|ref|ZP_06513012.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis EAS054]
 gi|289757663|ref|ZP_06517041.1| DNA polymerase III subunit alpha DnaE1 [Mycobacterium tuberculosis
            T85]
 gi|289761710|ref|ZP_06521088.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis GM 1503]
 gi|294996513|ref|ZP_06802204.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 210]
 gi|297634115|ref|ZP_06951895.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis KZN
            4207]
 gi|297731102|ref|ZP_06960220.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis KZN
            R506]
 gi|298525059|ref|ZP_07012468.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis
            94_M4241A]
 gi|306775736|ref|ZP_07414073.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu001]
 gi|306779560|ref|ZP_07417897.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu002]
 gi|306784291|ref|ZP_07422613.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu003]
 gi|306788659|ref|ZP_07426981.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu004]
 gi|306792998|ref|ZP_07431300.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu005]
 gi|306797377|ref|ZP_07435679.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu006]
 gi|306803258|ref|ZP_07439926.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu008]
 gi|306807837|ref|ZP_07444505.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu007]
 gi|306967657|ref|ZP_07480318.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu009]
 gi|307079560|ref|ZP_07488730.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu011]
 gi|307084125|ref|ZP_07493238.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu012]
 gi|313658434|ref|ZP_07815314.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis KZN
            V2475]
 gi|54036990|sp|P63978|DPO3A_MYCBO RecName: Full=DNA polymerase III subunit alpha
 gi|54040951|sp|P63977|DPO3A_MYCTU RecName: Full=DNA polymerase III subunit alpha
 gi|1403495|emb|CAA98315.1| PROBABLE DNA POLYMERASE III (ALPHA CHAIN) DNAE1 (DNA
            NUCLEOTIDYLTRANSFERASE) [Mycobacterium tuberculosis
            H37Rv]
 gi|13881224|gb|AAK45865.1| DNA polymerase III, alpha subunit [Mycobacterium tuberculosis
            CDC1551]
 gi|31618323|emb|CAD96241.1| Probable DNA polymerase III (alpha chain) dnaE1 [Mycobacterium bovis
            AF2122/97]
 gi|121493116|emb|CAL71587.1| Probable DNA polymerase III (alpha chain) dnaE1 [Mycobacterium bovis
            BCG str. Pasteur 1173P2]
 gi|124600834|gb|EAY59844.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis C]
 gi|134149932|gb|EBA41977.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis str. Haarlem]
 gi|148505495|gb|ABQ73304.1| DNA polymerase III subunit alpha DnaE1 [Mycobacterium tuberculosis
            H37Ra]
 gi|148721298|gb|ABR05923.1| DNA polymerase III alpha subunit dnaE1 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis F11]
 gi|224773056|dbj|BAH25862.1| DNA polymerase III subunit alpha [Mycobacterium bovis BCG str. Tokyo
            172]
 gi|253320901|gb|ACT25504.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            KZN 1435]
 gi|289415920|gb|EFD13160.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            T46]
 gi|289420116|gb|EFD17317.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            CPHL_A]
 gi|289439293|gb|EFD21786.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            KZN 605]
 gi|289538662|gb|EFD43240.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            K85]
 gi|289543337|gb|EFD46985.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            T17]
 gi|289690701|gb|EFD58130.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            T92]
 gi|289694221|gb|EFD61650.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis EAS054]
 gi|289709216|gb|EFD73232.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis GM 1503]
 gi|289713227|gb|EFD77239.1| DNA polymerase III subunit alpha DnaE1 [Mycobacterium tuberculosis
            T85]
 gi|298494853|gb|EFI30147.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis
            94_M4241A]
 gi|308215828|gb|EFO75227.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu001]
 gi|308327494|gb|EFP16345.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu002]
 gi|308330956|gb|EFP19807.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu003]
 gi|308334777|gb|EFP23628.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu004]
 gi|308338566|gb|EFP27417.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu005]
 gi|308342267|gb|EFP31118.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu006]
 gi|308345762|gb|EFP34613.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu007]
 gi|308350062|gb|EFP38913.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu008]
 gi|308354716|gb|EFP43567.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu009]
 gi|308362582|gb|EFP51433.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu011]
 gi|308366247|gb|EFP55098.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu012]
 gi|323719995|gb|EGB29107.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            CDC1551A]
 gi|326903177|gb|EGE50110.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            W-148]
 gi|328459148|gb|AEB04571.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            KZN 4207]
          Length = 1184

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 359/1074 (33%), Positives = 570/1074 (53%), Gaps = 70/1074 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  +  +L ++     PA+ +TD  N+F A EF   A  AGI+P
Sbjct: 9    SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKP 68

Query: 70   IIGCQLDID----------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  I           +  +        +   +   + ++   A G + L +L S  
Sbjct: 69   IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHA 128

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
                Q  +  R+    + E   EG+I+ TG  SG +         + A +    ++++ G
Sbjct: 129  SFEGQLSKWSRMDAELIAE-HAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +R     ++++     +P +ATN+  +++ +    H+ L+ V   
Sbjct: 188  PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247

Query: 238  TVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPI--LP 293
              +S  +R +   D +YLK+ +EM  I+ D +P A ++T+ IA R      V  P   +P
Sbjct: 248  KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMP 307

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             F   +  D    + + LR++  AGL  R   G          YR+R  +E++VI    F
Sbjct: 308  VFPVPDGHD----QASWLRHEVDAGLRRRFPAGP------PDGYRERAAYEIDVICSKGF 357

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFLIVAD I +A+   I VGPGRGS AGS+ AYAL ITDIDP+   LLFERFLNP+R 
Sbjct: 358  PSYFLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERT 417

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471
            SMPD DIDF   RR E++RY  +K+GH+RVAQ+ITFG+++ KAAL+D  R    Q  ++ 
Sbjct: 418  SMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 477

Query: 472  VDRLCKLIPNDP---AHPVSLQAIADDS--RFREAR------LADPSVDRLLEISQKLEG 520
             DR+ K +P  P   A  + L  I D S  R++EA         DP V  + + ++ LEG
Sbjct: 478  ADRITKALP--PAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEG 535

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ LT
Sbjct: 536  LIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLT 595

Query: 581  LLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  ++D + A RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP  
Sbjct: 596  IIGDAIDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTG 655

Query: 640  IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQE 693
             ED++A+++LYRPGP+       Y +RKN ++ I  IHP L +P+   L ET G+I+YQE
Sbjct: 656  FEDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQE 715

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            Q+M+IAQ ++ YSL+ AD+LR+AMGKK +E ++K+ E F  G   NG S      +++ +
Sbjct: 716  QIMRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTI 775

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FADY FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  
Sbjct: 776  LPFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLG 835

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV 872
            I ++PP VN   ++F      I Y L A++ VG      +++   DK  F    D+ +++
Sbjct: 836  ITVLPPDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKI 895

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEK 931
            D    N++V ESL+ AGA D  G++R  L     +        +K       ++F +++ 
Sbjct: 896  DISACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDD 955

Query: 932  GT------FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            GT      F+ K+  +++  ++   +   E+ +LG Y SGHPL+    +L        + 
Sbjct: 956  GTGTADPVFTIKVPDDEWEDKH---KLALEREMLGLYVSGHPLNGVAHLLAAQ----VDT 1008

Query: 986  SVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++  I   +      +R+  ++ S  ++  + G         +     E  FFP
Sbjct: 1009 AIPAILDGDVPNDAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1062


>gi|302533930|ref|ZP_07286272.1| DNA polymerase III subunit alpha [Streptomyces sp. C]
 gi|302442825|gb|EFL14641.1| DNA polymerase III subunit alpha [Streptomyces sp. C]
          Length = 1180

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 362/1078 (33%), Positives = 560/1078 (51%), Gaps = 68/1078 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+P F HL VH+ YSLL+GA  L ++           IA++D  NL  A +F   A  
Sbjct: 1    MTKTP-FTHLHVHTQYSLLDGAARLKDMFAACNEMGMTHIAMSDHGNLHGAYDFFHSAQK 59

Query: 65   AGIQPIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113
            AGI PIIG +  +  + + N +    G+ P      +          +  + A G   L 
Sbjct: 60   AGITPIIGIEAYVAPESRRNKRRIQWGQ-PHQKRDDVSGSGGYTHKTIWAANATGLHNLF 118

Query: 114  ELVSRMY----LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
             L S  Y    L    +        W     +EGLI  TG  SG +           A K
Sbjct: 119  RLSSDAYAEGWLTKWPRMDKETISQW-----SEGLIASTGCPSGEVQTRLRLGQFDEAIK 173

Query: 170  RLLTFKKLFGD-RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                +K +FG+ R ++ L  H    +R     ++++     +P + TN+S +    +  A
Sbjct: 174  AASDYKDIFGEGRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEAGA 233

Query: 228  HDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRC-SF 283
            HD L+ +     +S  DR R     +YLK+  EM +I S     E   NT ++A +  + 
Sbjct: 234  HDALLCIQTGKNLSDPDRFRFDGSGYYLKSTEEMYAIDSSDAWQEGCANTWKVAEQVDTE 293

Query: 284  ILQVHAPILPRFIEKECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
             +     ++P+F      DI     E    R + + G+  R   G        +D  +++
Sbjct: 294  GMFKFRNLMPKF------DIPDGYTEVTWFREETMRGMHRRFPGGI------PEDRMKQV 341

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            ++E++ I  M F GYFL+VADFI WAK   I VGPGRGS AGS+ AYA+ ITD+DP+   
Sbjct: 342  EYEMDTIISMGFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHG 401

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            L+FERFLNP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G+++AK A++D 
Sbjct: 402  LIFERFLNPERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDS 461

Query: 462  GRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDS--RFREARLA------DPSVDRLL 512
             R L  PY+  DRL K +P D     + L  I D S  R+ EA         +P V +++
Sbjct: 462  ARVLGYPYAMGDRLTKAMPADVLGKGIPLSGILDPSHPRYSEAGEIRGMYENEPDVKKVI 521

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            + ++ +EGL R    HAAG+++    ++  VP++      + +TQ++    E  GL+K D
Sbjct: 522  DTARGVEGLVRQMGVHAAGVIMSSERITDHVPVWVRHTDGVTITQWDYPSCESLGLLKMD 581

Query: 573  FLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGL+ LT++  ++  + A +G+ +DL  +P DD +T+ LL    TLG+FQ +   MR  
Sbjct: 582  FLGLRNLTIMDDAVKMVKANKGIDIDLLALPLDDPKTFELLQRGDTLGVFQFDGGPMRSL 641

Query: 632  LEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----T 685
            L  M+PD  EDI A+ +LYRPGP  +++   Y  RKN ++ I  IHP ++  L+E    T
Sbjct: 642  LRLMKPDNFEDISAVSALYRPGPMGMNSHTNYALRKNKQQDITPIHPELEKPLEEVLAVT 701

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+I+YQEQV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F +GA KNG S   
Sbjct: 702  YGLIVYQEQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFTIFQAGARKNGYSDQA 761

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               ++++L  FA Y FNK+H+AAY ++SY TA++K +YP E++A  +T   D+ +K   +
Sbjct: 762  IQALWDVLVPFAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAGLLTSVKDDKDKSAIY 821

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFD 863
              + R+  I+++PP+VN    +F   GD+ I + L A++ VG      I++    K  + 
Sbjct: 822  LNECRRMGIKVLPPNVNESESNFAAQGDDVILFGLTAVRNVGQNVVDSIIKTRKSKGKYS 881

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            S  DF  +V++   N+R +ESL+ AGA D  G++R  L+   +++      V++      
Sbjct: 882  SFPDFLDKVEAVVCNKRTVESLIKAGAYDEMGHTRKGLVAHHESMIDNVVAVKRKEAEGQ 941

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRK 977
             ++F                 VE S V +E       E+ +LG Y S HPL   + +L  
Sbjct: 942  FDLFGGMGDEDGGDEPGFGLDVEFSDVEWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSD 1001

Query: 978  MGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                G  +        G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1002 KTDAGISQLTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1059


>gi|221194701|ref|ZP_03567758.1| DNA polymerase III subunit alpha [Atopobium rimae ATCC 49626]
 gi|221185605|gb|EEE17995.1| DNA polymerase III subunit alpha [Atopobium rimae ATCC 49626]
          Length = 1276

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 343/1027 (33%), Positives = 537/1027 (52%), Gaps = 71/1027 (6%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC+      D ++   +      T   ++LL     GY  L++++S     +   
Sbjct: 125  IKPIFGCEAYFITDDCIERGTK-----QTRYHLILLAKNETGYVNLMKMMSEAASKEMFY 179

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R  L  L+    EG+I  +   SG I R+FF    + AE+  L +K++FGD  Y+ +
Sbjct: 180  FKPRTTLDMLRRY-HEGIICTSACVSGIIPRSFFAGQPEEAERWALIYKEIFGDDFYLEV 238

Query: 187  QRH-------RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            Q H        G+ DR    Q++ L +   + +VATN++ +L+ ED    D+   +   +
Sbjct: 239  QDHGLSDPNWNGFTDRTLSEQILNLGHKLNIKVVATNDNHYLTREDASVQDIASCIGTGS 298

Query: 239  VVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
              +  +R R++ +  Y K   EM  IFS  PE ++NT+E+A +C++ L      LP+F  
Sbjct: 299  KFADANRKRMSGNEFYFKTEEEMREIFSWAPEVIDNTLEVADKCNYELDWTHMYLPKF-- 356

Query: 298  KECDDIQKEEENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                D+ + E +E   R +   GL  R  +          + ++R ++E ++I +  F+ 
Sbjct: 357  ---PDLAEGETSEERFRKECEEGLARRYGENWREVEISGINVKERFEYEYDIICKKGFAD 413

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV ++++WAK+N I VGPGRGS AG++ AYA+ IT  DPL   L+FERFL+P R  M
Sbjct: 414  YFLIVQEYVRWAKQNGIGVGPGRGSAAGAIVAYAMDITTFDPLENGLMFERFLSPQRSEM 473

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF  +RR EV+ +V+  YG ERV+ +IT+ +++AK A+ D  R L  P  Q  RL
Sbjct: 474  PDIDMDFDDERRLEVVEHVRQLYGPERVSHVITYSTIKAKQAINDACRVLDYPVYQGQRL 533

Query: 476  CKLIPNDPAHPVSLQAIADDSR--------FREARLADPSVDRLLEISQKLEGLYRHAST 527
             K+I NDP   +S      D          F EA   + +   +++ +  +EGL+R    
Sbjct: 534  SKMISNDPKAQLSKVLHKGDGEKNDLYNPDFEEAYNTEEASREIIDAALAIEGLHRGEGV 593

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL- 586
            HA  ++I   P++  VP   D + ++ +TQF    +   GL+K DFLGL+TLT++ ++L 
Sbjct: 594  HACAVLIAPTPVNDHVPTKMDTKGEVEITQFEGHSVADMGLLKMDFLGLRTLTVISRALK 653

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            +  A   V +++  IPF+D E Y L+    T G+FQ+ES+GM   ++GM+P   + I+AL
Sbjct: 654  NIKANFDVDINVDEIPFEDPEIYRLMREGRTSGVFQIESAGMTATIKGMRPTEFKHIVAL 713

Query: 647  VSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ++LYRPGP+   +V  Y +R NG+E+ V   P +  +L ET G ++YQEQVMQI+  +SG
Sbjct: 714  IALYRPGPLGAGMVSSYIDRMNGREEPVDYDPRLHDILAETYGTMVYQEQVMQISMKMSG 773

Query: 705  YSLSEADVLR--------RAMGKKIKEEMDKQKE----RFISGASKNGISKTIAVNIFEL 752
            ++  E+D +R        + M + I+   D   E     +  GA +NG  +  A  I+E 
Sbjct: 774  FTAGESDKVRKAVAKKKIKLMQEVIQHWDDGADETMEQHWKEGAVRNGFKRETAEIIWED 833

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA Y FNKSH+A YA++  QTAW+K HYP E++AA +T  M   +KI  +    RQ 
Sbjct: 834  VLKFASYAFNKSHSAGYAILVMQTAWLKAHYPHEYMAAVLTSFMGKTDKIVHYVSACRQE 893

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSR 871
             I++  P +N    DF      I +  A I+GVG   A  IM E     PF +L DF  R
Sbjct: 894  GIKVSQPDINESGRDFTATKEGIRFGFAGIRGVGAGVAEAIMAERQKGGPFSNLRDFIDR 953

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD--NIQKYAQWVEKNRTNKHE----- 924
            +D+ +  R V+E+L+ AGA D  GY+RMQL++ +D  N +       K + +K       
Sbjct: 954  MDASQAKRNVVEALIKAGAFDSTGYTRMQLMKLIDKNNPENLLDSAAKRQRDKASGQISM 1013

Query: 925  -NIFAHEKGT-FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR------ 976
             ++F+  +G+ F++              +   E  VLG Y S HPL  Y   L       
Sbjct: 1014 FDLFSEVEGSGFTEDFPDPDGVEWERRFKLSQEYDVLGIYVSDHPLTPYAYALSLARDYE 1073

Query: 977  ----------KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
                      +    G +E      G NIRL+ MV + Q++ T+ G  +  VT  +   E
Sbjct: 1074 LVDIDATEEYRAPDGGIKERFKVPEGENIRLSGMVTNIQKRITKNGDPMAIVTLEDMEGE 1133

Query: 1027 YEANFFP 1033
                 FP
Sbjct: 1134 LSLVLFP 1140



 Score = 42.4 bits (98), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
          +FVHL  HS +S+L+ A  +N+++ +    + PA+A+TD   LF   +F   AC
Sbjct: 2  AFVHLHNHSDFSILDAATRVNDMVKRAVDLKMPALALTDHGYLFGIPDFDL-AC 54


>gi|297194911|ref|ZP_06912309.1| DNA polymerase III subunit alpha [Streptomyces pristinaespiralis ATCC
            25486]
 gi|197723064|gb|EDY66972.1| DNA polymerase III subunit alpha [Streptomyces pristinaespiralis ATCC
            25486]
          Length = 1179

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 353/1072 (32%), Positives = 569/1072 (53%), Gaps = 64/1072 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VH+ YSLL+GA  L ++ +         IA++D  NL  A +F   A  AG+ 
Sbjct: 4    PPFTHLHVHTQYSLLDGAARLKDMFEACNEMGMTHIAMSDHGNLHGAYDFFHTAKKAGVT 63

Query: 69   PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVS 117
            PIIG +  +  + + N +    G+ P      +          +  + A G   L  L S
Sbjct: 64   PIIGIEAYVAPESRRNKRKIQWGQ-PHQKRDDVSGSGGYTHKTIWAANATGLHNLFRLSS 122

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              Y     ++  R+    + +  ++GLI  TG  SG +           A K    ++ +
Sbjct: 123  DAYAEGWLQKWPRMDKETISQW-SQGLIASTGCPSGELQTRLRLGQFDEALKSASEYQDI 181

Query: 178  FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG DR ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+ + 
Sbjct: 182  FGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEAAAHDALLCIQ 241

Query: 236  HSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAP-I 291
                +S  DR R     +YLK+  EM +I S     E   NT+ +A++        A  +
Sbjct: 242  TGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCRNTLLVAQQVDTEGMFEAKNL 301

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +P+F   E       E    + + + G+E R   G        +D ++++++E++VI +M
Sbjct: 302  MPKFDIPEG----HTEVTWFKEEVMRGMERRFPGGI------PEDRQKQVEYEMDVIIQM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK   I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+ 
Sbjct: 412  RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPNDP-AHPVSLQAIADDS--RFREARLA------DPSVDRLLEISQKLEGLY 522
             DRL K +P D     + L  I D S  R+ EA         +P V ++++ ++ +EGL 
Sbjct: 472  GDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRAMYENEPDVKKVIDTAKGVEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++    +++ VP++      + +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSETITEHVPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + + +G+ +++  +P DD +T+ LL    TLG+FQ +   MR  L  M+PD  E
Sbjct: 592  DDAIKMVKSNKGIDLEMLSLPLDDPKTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651

Query: 642  DIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            DI A+ +LYRPGP  +++   Y  RKN +++I  IHP ++  L+E    T G+I+YQEQV
Sbjct: 652  DISAVSALYRPGPMGMNSHTNYALRKNKQQEITPIHPELEEPLREVLDVTYGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  +E+ K    F  GA + G S      ++++L  
Sbjct: 712  QKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFVLFQKGAREKGYSDEAIQALWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H+AAY ++SY TA++K ++P E++AA +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECRRMGIK 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L A++ VG      I++   A   + S  DF  +V+
Sbjct: 832  VLPPNVNESMSNFAAQGDDVILFGLTAVRNVGQNVVESIIKTRKAKGKYSSFPDFLDKVE 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F      
Sbjct: 892  AVVCNKRTIESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVAVKRKEAEGQFDLFGGMGEE 951

Query: 934  FSDKITLEKFSVENSSVRFE------NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
             SD+       VE S V ++       E+ +LG Y S HPL   + +L        + ++
Sbjct: 952  ASDEPGF-GLDVEFSDVEWDKSYLLAQEREMLGLYVSDHPLFGIEHVLSDK----TDAAI 1006

Query: 988  ATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + + G        + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1007 SQLTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|229496705|ref|ZP_04390419.1| DNA polymerase III, alpha subunit family [Porphyromonas endodontalis
            ATCC 35406]
 gi|229316602|gb|EEN82521.1| DNA polymerase III, alpha subunit family [Porphyromonas endodontalis
            ATCC 35406]
          Length = 1251

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 353/1069 (33%), Positives = 560/1069 (52%), Gaps = 116/1069 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF----------------- 53
            FVHL VHS +S+L+G  S++ ++ K   D  P IA+TD   +F                 
Sbjct: 4    FVHLHVHSQFSILDGQASVSALVKKAIGDGMPGIALTDHGVMFGIKTFFDECNKVNSKHR 63

Query: 54   ---SAL-----EFSQKACAAG--------------------IQPIIGCQLDIDMQDNLKM 85
               SAL     E  +K                          +PI GC+     +   + 
Sbjct: 64   SRISALKKEIKELQKKESPTPEDKEEIEKLEQEISEVERQMFKPIFGCEAYCARR--TRF 121

Query: 86   TNQGKTPFPTVPS---------IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
                  P P  PS         ++LL    +GY  L ++VS  +   +  +  RI    L
Sbjct: 122  DKDKDVPDPYNPSRSIDRSGWHLILLAKNKQGYLNLCKMVSASFTEGEYYRP-RIDKDLL 180

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--R 194
            ++   EG+I+++    G + +       + AE+ +  FK +FG+  Y+ +Q H+  D   
Sbjct: 181  EQY-HEGVIVMSACLGGEVPQHILGGHPERAEETVRWFKNIFGEDYYLEVQLHQTDDPNA 239

Query: 195  YRESQVVQLAYTHEL---------PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             RE+ V QLA    +          +VATN+  F+++ED  AHD+L+ +     +    R
Sbjct: 240  NRETFVQQLAVNEVIYDIAERTGVKVVATNDVHFVNQEDATAHDMLICLGTKRDLDDPQR 299

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQ 304
             R +   +LK + EM ++F+D PE L NT+EI  +  F    +  ++P F + +  DD  
Sbjct: 300  MRYSQQEWLKTQEEMNAVFADRPELLSNTLEILNKVEFYTIENPALMPDFPLPEGFDDAD 359

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K     L++    G ++R            ++ ++R+DFELN I  M F GYFLIV D I
Sbjct: 360  KY----LQHLTYEGAKMRYGDPI------PEEVKERIDFELNTIKSMGFPGYFLIVQDLI 409

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            Q A+   + VGPGRGS AGS  AY L IT++DPL++ LLFERFLNPDR+S+PD DIDF  
Sbjct: 410  QAARDMGVCVGPGRGSAAGSAVAYCLKITNLDPLKYGLLFERFLNPDRISLPDIDIDFDD 469

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
              R +++++   KYGH+ VAQIITFG ++AK+++ DV R   +P  +  R+ KLIP D  
Sbjct: 470  SGRAKILQWATEKYGHKNVAQIITFGEMKAKSSIADVARLKHIPVEESRRITKLIP-DKF 528

Query: 485  HPVSLQAIADDSRFREAR---------LADPSVDRL-----------LEISQKLEGLYRH 524
                ++ I     +  A+         L  P + +L            + +QKLEG  R+
Sbjct: 529  SDSDMELIHKTPGYENAKGNVTIELSTLVVPELKKLQVGSNTQIQDTFKYAQKLEGSIRN 588

Query: 525  ASTHAAGIVIGDRPLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
               HA G++IG   +S ++P+   + +    + +TQ+  K IE  GLIK DFLGLKTL++
Sbjct: 589  IGVHACGVIIGKYDISDVIPISTSFDENGEKVLITQYEGKVIESTGLIKMDFLGLKTLSI 648

Query: 582  LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +++ L+ +  R  K +D+  IP DD +T+ L      +GIFQ ES+GM++ L  +QPD  
Sbjct: 649  IREGLENVKHRFHKDIDIDHIPLDDEKTFKLFCEGRMVGIFQFESAGMQKYLRELQPDRF 708

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            E +IA+ +LYRPGP+  I  Y  R++G+E+I+   P    +L+ET GV +YQEQVM +++
Sbjct: 709  ELLIAMNALYRPGPMKYIPQYIARRHGREEIIYDVPETKEILEETFGVTVYQEQVMLLSR 768

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             L+ ++  ++D LR+AMGKK  EEM+K K  F+ G  +NG SK +   I+     FA Y 
Sbjct: 769  SLANFTRGQSDSLRKAMGKKKIEEMEKLKADFLKGGVENGHSKEVLEKIWMDWEDFAKYA 828

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSHAA Y+ ++YQTA++K HYP EF+A +++  + N  +I K  ++ +   I+++ P 
Sbjct: 829  FNKSHAACYSWLAYQTAYLKAHYPSEFMAGNLSCNLSNAPEIAKLMKECKAMGIRLLSPD 888

Query: 821  VNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLN 878
            VN     F V  N  I + L+ IKGV  TT   ++E    + PF S+ DF +R+  + +N
Sbjct: 889  VNESMQKFSVNSNGDIRFGLSGIKGVNQTTIDKLIEDREQNGPFTSIYDFVARIPRQFIN 948

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQK---------YAQWVEKNRTNKHENIFAH 929
            R+ +E+   +GA D FG  R        N ++         Y + V++  +++   +F  
Sbjct: 949  RKTMEAFALSGAFDSFGIERESFFAPPVNSREDSFIATLLAYGRIVQEESSSQSMGLFGE 1008

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
             +     +  + +    N+  +   E  ++G Y S +PL+ Y+ IL K+
Sbjct: 1009 SEELSIPEPEVPQAEPWNNLTKLSKEYELVGIYISSNPLEPYRLILDKL 1057


>gi|215403402|ref|ZP_03415583.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 02_1987]
 gi|289745303|ref|ZP_06504681.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 02_1987]
 gi|289685831|gb|EFD53319.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 02_1987]
          Length = 1184

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 359/1074 (33%), Positives = 570/1074 (53%), Gaps = 70/1074 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  +  +L ++     PA+ +TD  N+F A EF   A  AGI+P
Sbjct: 9    SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKP 68

Query: 70   IIGCQLDID----------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  I           +  +        +   +   + ++   A G + L +L S  
Sbjct: 69   IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHA 128

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
                Q  +  R+    + E   EG+I+ TG  SG +         + A +    ++++ G
Sbjct: 129  SFEGQLSKWSRMDAELIAE-HAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +R     ++++     +P +ATN+  +++ +    H+ L+ V   
Sbjct: 188  PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247

Query: 238  TVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPI--LP 293
              +S  +R +   D +YLK+ +EM  I+ D +P A ++T+ IA R      V  P   +P
Sbjct: 248  KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMP 307

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             F   +  D    + + LR++  AGL  R   G          YR+R  +E++VI    F
Sbjct: 308  VFPVPDGHD----QASWLRHEVDAGLRRRFPAGP------PDGYRERAAYEIDVICSKGF 357

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFLIVAD I +A+   I VGPGRGS AGS+ AYAL ITDIDP+   LLFERFLNP+R 
Sbjct: 358  PSYFLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERT 417

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471
            SMPD DIDF   RR E++RY  +K+GH+RVAQ+ITFG+++ KAAL+D  R    Q  ++ 
Sbjct: 418  SMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 477

Query: 472  VDRLCKLIPNDP---AHPVSLQAIADDS--RFREAR------LADPSVDRLLEISQKLEG 520
             DR+ K +P  P   A  + L  I D S  R++EA         DP V  + + ++ LEG
Sbjct: 478  ADRITKALP--PAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEG 535

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ LT
Sbjct: 536  LIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLT 595

Query: 581  LLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  ++D + A RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP  
Sbjct: 596  IIGDAIDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTG 655

Query: 640  IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQE 693
             ED++A+++LYRPGP+       Y +RKN ++ I  IHP L +P+   L ET G+I+YQE
Sbjct: 656  FEDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQE 715

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            Q+M+IAQ ++ YSL+ AD+LR+AMGKK +E ++K+ E F  G   NG S      +++ +
Sbjct: 716  QIMRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTI 775

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FADY FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  
Sbjct: 776  LPFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLG 835

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV 872
            I ++PP VN   ++F      I Y L A++ VG      +++   DK  F    D+ +++
Sbjct: 836  ITVLPPDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKI 895

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEK 931
            D    N++V ESL+ AGA D  G++R  L     +        +K       ++F +++ 
Sbjct: 896  DILACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDD 955

Query: 932  GT------FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            GT      F+ K+  +++  ++   +   E+ +LG Y SGHPL+    +L        + 
Sbjct: 956  GTGTADPVFTIKVPDDEWEDKH---KLALEREMLGLYVSGHPLNGVAHLLAAQ----VDT 1008

Query: 986  SVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++  I   +      +R+  ++ S  ++  + G         +     E  FFP
Sbjct: 1009 AIPAILDGDVPNDAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1062


>gi|304383785|ref|ZP_07366243.1| DNA-directed DNA polymerase III alpha subunit [Prevotella marshii DSM
            16973]
 gi|304335041|gb|EFM01313.1| DNA-directed DNA polymerase III alpha subunit [Prevotella marshii DSM
            16973]
          Length = 1238

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 363/1115 (32%), Positives = 577/1115 (51%), Gaps = 100/1115 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-------SQKAC 63
            FVHL VH+ YS+L+G  S+ N+++K  A+    +AITD  N+F   EF       + +  
Sbjct: 4    FVHLHVHTYYSILDGQSSIENLVEKAVANGMKGMAITDHGNMFGTKEFYNYCKGVNARLK 63

Query: 64   AAG---IQPIIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            A G    +PIIGC++ +  +    K+  +G     +   +++L     GY+ LI+LVSR 
Sbjct: 64   AEGKPAFKPIIGCEMYVAHRKKTDKVFEKGDR---SGYHLIVLAKNYTGYKNLIKLVSRS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++ D      R     L+    EGLI+ +   +G + R       + A + +  + ++FG
Sbjct: 121  WV-DGFYMRPRTDREDLERF-HEGLIVCSACIAGEVPRKILSGDMEGAREAVEWYHRVFG 178

Query: 180  DRLYVNLQRHRGYDRYRESQ-------------VVQLAYTHELPLVATNNSLFLSEEDYE 226
            +  Y+ +QRH   D + ++              ++ L   + + ++ TN++ F+ +E+ E
Sbjct: 179  EDYYLEMQRHEVKDPHVKANRETFPQQQRANKVLLTLGKEYGIKVICTNDAHFVDQENAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    +   +R   T   + K R EM  +F+D PEAL NT+EI  +      
Sbjct: 239  AHDHLLCLSTGKDLDDPNRLIYTKQEWFKTREEMNEVFADQPEALTNTLEILDKVEVYSI 298

Query: 287  VHAPILPRFI--------------------------EKECDDIQKEEENELRNKAVAGLE 320
               PI+P F                           ++  ++I   EE E + + + G +
Sbjct: 299  DSLPIMPFFPIPESFGTEEDIRRRYTKEQLFEEFTRDENGNEILSREEAEQKIEKLGGYD 358

Query: 321  ----VRLAQGAIAK-GYHA----------QDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                ++     +AK  Y            ++  +R+ FEL+++  M F GYFLIV DFI 
Sbjct: 359  KLYRIKFEADYLAKLAYDGAKPLYGDPLPEEVAERIKFELHIMKTMGFPGYFLIVQDFIN 418

Query: 366  WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             A+ N  + VGPGRGS AGSV AY L IT IDP+++ LLFERFLNPDR+S+PD D DF  
Sbjct: 419  SARNNLGVLVGPGRGSAAGSVVAYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDD 478

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D R +V+ +V++KYGH++VA IIT+G++  K +++DV R  ++P  Q + LCK+IP+   
Sbjct: 479  DGRGKVLEWVEDKYGHDKVAHIITYGTMATKNSIKDVARVERLPLEQANYLCKVIPDRLP 538

Query: 485  HPVSLQ---AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              + +    AI      REA  + D  +   ++ ++ LEG  R    HA G +I    +S
Sbjct: 539  DGMKMNLTNAIKAVPELREAEASPDERLSNTMKYAKMLEGTVRGTGIHACGTIICRDAIS 598

Query: 541  QLVPMY-----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGV 594
              VP+       D    L  TQ++   IE+ GLIK DFLGLKTL++L+++++ +    G 
Sbjct: 599  DWVPVSVAEDKADPGHKLLCTQYDGHVIEETGLIKMDFLGLKTLSILKEAVENIRISTGD 658

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +DL  IP DD  TY L     T+G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP
Sbjct: 659  VIDLDHIPIDDKLTYQLYCEGRTIGTFQFESAGMQKYLRELQPSVFEDLIAMNALYRPGP 718

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RK    KI    P ++  LK+T G+ +YQEQVM +++ L+ ++  ++D LR
Sbjct: 719  MDYIPDFIARKRDNSKIKYDLPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGQSDTLR 778

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +AMGKK  ++M+  +  F  G +KNG  K +   I+E   KFA Y FNKSHA  Y+ +++
Sbjct: 779  KAMGKKQIDKMNHLEGLFYEGGAKNGYPKEVLSKIWEDWKKFASYAFNKSHATCYSWVAF 838

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833
            QTA++K HYP E++AA M+  ++N+ +I KF  + +   I  + P VN     F V    
Sbjct: 839  QTAYLKAHYPAEYMAAVMSRNLNNIAEITKFMDECKAMGISTLGPDVNESRQKFSVNKKG 898

Query: 834  RIYYSLAAIKGVG-TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + LAAIKG+G       I E   + PF  + D   R++   +NR+ LESLV +G LD
Sbjct: 899  EIRFGLAAIKGMGDAAADAIIAERDKNGPFKDVFDVVQRINLNAVNRKALESLVLSGGLD 958

Query: 893  CFGYSRMQLL-------QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
             F  +R           Q LD + +Y Q  +  +     ++F   +       ++     
Sbjct: 959  SFRIARESFFAPDNRGNQFLDTLIRYGQLYQMEQNEAQNSLFGGTEAVEIATPSVPSAEP 1018

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM--------GIKGYEESVATIRGNNIRL 997
             +   R   E+ ++G Y S HPLD +  I   +        G  G  E ++  + + +  
Sbjct: 1019 WSPPERLNRERDLVGIYLSAHPLDDFGMIFHNLCNTACTEVGQDGRREELS--KRDELIF 1076

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +V S + K T+ G   G+VT  +     E  FF
Sbjct: 1077 GGIVTSNKSKFTKTGKPCGFVTLEDFEGSGELAFF 1111


>gi|261749409|ref|YP_003257094.1| bifunctional DNA polymerase III subunit alpha/DNA polymerase III,
            epsilon subunit [Blattabacterium sp. (Periplaneta
            americana) str. BPLAN]
 gi|261497501|gb|ACX83951.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase III,
            epsilon subunit (dnaQ) fusion protein [Blattabacterium
            sp. (Periplaneta americana) str. BPLAN]
          Length = 1435

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 350/1009 (34%), Positives = 550/1009 (54%), Gaps = 64/1009 (6%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG------ 66
            H+  H+S+S+L   + + +++++      PA+ ITD  N+  A  F     +A       
Sbjct: 251  HIHNHTSFSILYSTIDIQSLIERAIYFDMPAVGITDYGNMMGAFHFLNAIHSANKKYSSL 310

Query: 67   ---IQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               I+ I+GC++ I D     K T +   P      + L  + A GYQ L +L S  ++ 
Sbjct: 311  KKYIKGIVGCEVFISDFYSQKKFTKE--QPDKRYHQVFLSKNKA-GYQNLSKLCSHGFIE 367

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                   R+    +++   + LI LTG     I +         AEK  L +K+LF +  
Sbjct: 368  GFYAGVPRVGKDLIEKY-KKNLIALTGDLYAEIPQTILNKGKIKAEKVFLWWKELFEEDF 426

Query: 183  YVNLQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH---- 236
            Y+ L RH G +   Y    +++ +  + +  +  NN+ +L  ++  AHD+L+ V +    
Sbjct: 427  YIELLRH-GLEEEDYVNKVLLKFSEKYHVKYIVQNNTFYLDPKESYAHDILLCVKNGEKK 485

Query: 237  STVVSQKDRPRVT-PDH--YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            ST + +    R   P+H  Y K+  EM  IFSD PE+ +   E+  +          +LP
Sbjct: 486  STPIGRGRGYRFGFPNHEFYFKSPEEMKEIFSDFPESFDFLEELVNKVESYHLSQKVLLP 545

Query: 294  RF-----IEKECDDI---QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            +F      E   D I    + E + LR+ A  G + R         +   + ++R+ FEL
Sbjct: 546  KFKIPESFENSLDKIDGGHRGENSFLRSLAYEGAKKRYP-------HMTPEIQERIHFEL 598

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
              I ++ + GYFLIV +FI  AKK NI VGPGRGS AGSV AY + ITDIDP++++LLFE
Sbjct: 599  KTIEKIGYPGYFLIVQNFISQAKKMNISVGPGRGSVAGSVVAYCIGITDIDPIKYNLLFE 658

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNPDR+S+PD DIDF    R+++I +V  KYG  +VAQIIT+ ++ AK+A+RD  R L
Sbjct: 659  RFLNPDRISLPDIDIDFDDKGREKIIEWVVQKYGKNQVAQIITYATMGAKSAIRDTARVL 718

Query: 466  QMPYSQVDRLCKLIPNDPA---------HPVSLQAIADDSRFREARLADPSVDRL----L 512
             +   + D L K++PN  +         H +   +  D    ++ +      D L    L
Sbjct: 719  DLSLKKTDYLAKMVPNLLSLKILLSKKDHLLEKMSKEDMENVKKLKSISEKKDTLEGQVL 778

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            + ++ LEG  R    HA GI+I    + + VP+     SDL +TQF+   +E+AGL+K D
Sbjct: 779  QQAKILEGSIRSTGIHACGIIISSYDIKEYVPVSISKESDLLITQFDNHVVEQAGLLKMD 838

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            FLGLKTLT++++ L+ + +R + V+    P +D +TY L     T+ +FQ ES GM++ L
Sbjct: 839  FLGLKTLTIIKEVLNIIKKR-INVEKISFPLEDIKTYSLFQKGETVAVFQYESPGMQKYL 897

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
              ++PD  +D+IA+ +LYRPGP+  +  +  RK+GKE I    P ++  LKET G+ IYQ
Sbjct: 898  RLLKPDKFDDLIAMNALYRPGPLQYLTNFIYRKHGKEAITYDLPEMEEFLKETYGITIYQ 957

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM IAQ ++G+S  E D LR+AMGKK KE ++K K +FI  AS+ G  K I   I++ 
Sbjct: 958  EQVMLIAQKIAGFSKGETDFLRKAMGKKQKEVLNKMKNQFIIQASRKGYPKKILEKIWKD 1017

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
               F+ Y FNKSHA  YA I++QTA++K H+P E++A+ ++  MDN++++  F ++ ++ 
Sbjct: 1018 WEYFSCYAFNKSHATCYAYIAFQTAYLKAHFPSEYMASVLSHNMDNIKQLTYFIKECKRM 1077

Query: 813  NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCS 870
             I ++ P +N     FKV D N I + +  IKGVG    ++I++   +  P+ S+ D   
Sbjct: 1078 GISVIGPDINESDAFFKVTDSNCIRFGMRGIKGVGENAVKNIIQERENHGPYTSIFDLVK 1137

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQL--------LQSLDNIQKYAQWVEKNRTNK 922
            R+D + +N++ LESLV +G+LD F   R Q         L +L+ I ++    +K R  +
Sbjct: 1138 RIDLRIVNKKTLESLVLSGSLDKFHIHREQYFHFEEEKKLSTLEKIIRFGSKFQK-RKMQ 1196

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             +N    +K    +K  + K    N+  +   E+ VLG Y S HPLD Y
Sbjct: 1197 EKNFPKKKKKIEVEKPMIIKSEPWNNIYKLSKEKEVLGLYASSHPLDDY 1245


>gi|291302505|ref|YP_003513783.1| DNA polymerase III subunit alpha [Stackebrandtia nassauensis DSM
            44728]
 gi|290571725|gb|ADD44690.1| DNA polymerase III, alpha subunit [Stackebrandtia nassauensis DSM
            44728]
          Length = 1179

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 374/1085 (34%), Positives = 585/1085 (53%), Gaps = 89/1085 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VH+ YS+L+GA  +  +  ++      +IA+TD  N++ A EF Q+A   GI
Sbjct: 2    SKDFVHLHVHTEYSMLDGAAKMRPMFAEVERLGMSSIAMTDHGNMYGAYEFYQEAKKTGI 61

Query: 68   QPIIGCQLDIDMQD--NLKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIG +  +   D  + K    G+        +       + +  +   G + L++L S
Sbjct: 62   KPIIGIEAYLAPGDRAHKKPVRWGRPDQKSDDVSGGGAYTHMTMWAANGSGLRNLLKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
                  Q  Q  R+    L +   EG+I  TG  SG +      +    A      ++ +
Sbjct: 122  LASFEGQ-YQKPRMDAELLSKY-AEGIIATTGCPSGEVQTRLRLDQPDEALAAAAKYQDI 179

Query: 178  FG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            FG D  ++ L  H G D   R RE  ++ ++    LPL+ATN+S ++ + D + H  L+ 
Sbjct: 180  FGKDNFFLELMDH-GLDIETRVREG-LLDISKKLGLPLLATNDSHYVHQHDSDNHAALLC 237

Query: 234  VAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI- 291
            V     ++  +R   + D +Y+K+ +EM  ++S+LPEA +NT+ IA R     +V A + 
Sbjct: 238  VQSGKTLTDPNRFAFSGDGYYIKSPAEMRELWSELPEACDNTLLIAERIESYEEVFAEVD 297

Query: 292  -LPRFI--EKECDDI--QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
             +PRF   E E +DI  +++ E    N+   GL               Q+Y+ R+D EL 
Sbjct: 298  RMPRFPLKEGETEDILLRRDVEKYTPNRFPDGL--------------TQEYKDRIDRELG 343

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            V++ M FSGYFL+V D ++WAK   IP GPGRGS  GS+ AY L ITD+DP+  SL+FER
Sbjct: 344  VMSAMGFSGYFLVVGDLVRWAKSQKIPTGPGRGSATGSLVAYILQITDLDPIEHSLIFER 403

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA-L 465
            FLNP+R+S PD D+DF + RR EV++Y   K+G E VAQ+ITFG+++ KAAL+D  RA L
Sbjct: 404  FLNPERVSPPDIDLDFDERRRGEVMQYTVEKWGEENVAQVITFGTIKTKAALKDAARAHL 463

Query: 466  QMP-YSQVDRLCKLIPND-PAHPVSLQAIADDS--RFREARLA------DPSVDRLLEIS 515
              P ++  +R+ K +P    A  + L  I D +  R+ EA         +P V ++ + +
Sbjct: 464  GQPGFAVAERIAKALPPPVAAQDIPLSGIVDPNHERYNEAAEVRALVENEPEVKQIFDTA 523

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFL 574
            + LEGL R+A  HA  ++I   PL   VP++  +R D  V T ++    E  GL+K DFL
Sbjct: 524  RGLEGLIRNAGVHACAVIISSVPLLGQVPLW--MRPDGSVITGWDYPSCEAMGLLKMDFL 581

Query: 575  GLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT++  ++D + +  GV++    I  DD +T+ LL    + G+FQ E +GM+  L+
Sbjct: 582  GLRNLTVIGDAIDNVKRNHGVELSTETITLDDPKTFELLCRGESAGVFQFEGAGMQDLLK 641

Query: 634  GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQG 687
             MQP    DI A+ +LYRPGP+  +  + Y  R NG++    IHP     ++P+L ET  
Sbjct: 642  RMQPKKFGDIAAISALYRPGPMAANAHLNYAERANGRQSPEPIHPELKDALEPILGETFH 701

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +++YQEQVM IAQ L+GY+L  AD+LRRAMGKK KE ++K+ E+F +G + NG S     
Sbjct: 702  LLVYQEQVMAIAQQLAGYTLGGADLLRRAMGKKKKEIIEKEFEKFSNGMTANGYSMEACQ 761

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             +++++  FA Y FNKSH A Y +++Y TA++K +YP E++AA +T   DN +K   +  
Sbjct: 762  TLWDVMLPFAGYAFNKSHTAGYGLVTYWTAYLKANYPAEYMAALLTSVGDNKDKSALYLA 821

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLE 866
            D R+  I+++PP VN    +F      I + L AI+ VGT     I+    A   ++S  
Sbjct: 822  DCRKLGIKVLPPDVNESRRNFSAVGGDIRFGLGAIRNVGTGVVDSIVATREAKGNYESFS 881

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF  + +    N+RV+ESL+ AGA D   +SR  L +  + + +    V++       ++
Sbjct: 882  DFLQKSELPVCNKRVIESLIKAGAFDSLKHSRKALCERHEVLVESIVGVKRKEAEGQFDL 941

Query: 927  F----------AHEKGTFSDKITLEKFSVEN--SSVRFENEQRVLGFYFSGHPLDVYKPI 974
            F          A   G  +D      FS ++       E E+ +LG Y SGHPL+  + I
Sbjct: 942  FGGMLTPDQPDAATPGGDTD------FSGDDWPRKTTLEFEREMLGLYVSGHPLEGAEMI 995

Query: 975  LRKMGIKGYEESVATI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            LR    K  E  +A +       G ++ +A ++ S +++ T++G      T  +     E
Sbjct: 996  LR----KNSENRIADLLTSDIPDGTSVTIAGIISSLERRVTKQGKPWAKATVEDLDAAIE 1051

Query: 1029 ANFFP 1033
              FFP
Sbjct: 1052 CLFFP 1056


>gi|313886877|ref|ZP_07820581.1| DNA polymerase III, alpha subunit [Porphyromonas asaccharolytica
            PR426713P-I]
 gi|312923674|gb|EFR34479.1| DNA polymerase III, alpha subunit [Porphyromonas asaccharolytica
            PR426713P-I]
          Length = 1287

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 344/1060 (32%), Positives = 539/1060 (50%), Gaps = 104/1060 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------- 63
            +V L VHS YS+L+G   +  ILDK  A   P IA+TD   ++    F+  A        
Sbjct: 32   YVPLHVHSHYSILDGMAPVEKILDKAVACGMPGIALTDHGAMYGIKNFTNYANDKINGDK 91

Query: 64   -----------------------------------AAGIQPIIGCQLDIDMQDNLKMTNQ 88
                                                +  + I+GC++ +  +        
Sbjct: 92   LAQIKSLRKQIKELEADASNADEIARIKGEIKTIEQSLFKAIVGCEVYVARRSLELKDKD 151

Query: 89   GKTPFPTVPSI-------VLLVSTAEGYQRLIELVSRMYLLDQGKQ-SVRICLSWLQEIG 140
             K P     SI       +LL    +GY+ LI++VS  +  + G+    RI    L E  
Sbjct: 152  AKDPDNPTRSIDRSGYHLILLAKNLQGYRNLIKMVSIAW--EHGEYYKPRIDKKLLSE-H 208

Query: 141  TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR------GYDR 194
             EG+I  +    G I +         A K  L +K+ FG+  Y+ +  H       G + 
Sbjct: 209  HEGIIASSACLGGEIAQHILHGRLDEARKTALWYKETFGEDYYLEIMLHPNSDPLGGQET 268

Query: 195  YRES-----QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            Y +      +V+++     + ++ATN++ FL+EED EAHD L+ +  ++ +S  +R R T
Sbjct: 269  YHKQLQVAQEVIKMGQELGIKVIATNDTHFLNEEDAEAHDHLICMTTNSPISDPNRMRYT 328

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               +LK+  EM ++F+D P+ LENT+EI  +  +    HAP++P F   E  +    E++
Sbjct: 329  KQEWLKSPEEMTALFADYPDVLENTLEICNKVEYYSIDHAPLMPHF---ELPEGFASEDD 385

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR+    G + R             + ++R+D EL VI  M F GYFL+V DFI  A++
Sbjct: 386  YLRHLTYEGAKKRYGDPV------PPEVQERIDMELGVIQNMGFPGYFLVVQDFIAAARQ 439

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              + VGPGRGS AGS  AY L+IT I+P+++ LLFERFLNPDR+SMPD DIDF    R  
Sbjct: 440  LGVRVGPGRGSAAGSAVAYCLSITQIEPIKYGLLFERFLNPDRISMPDIDIDFDDKNRWR 499

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V+ +V NKYG + V+ IIT  ++  K A++ V R  ++P  Q +RLCKLIP+     V  
Sbjct: 500  VLEWVTNKYGRDHVSNIITLTTMATKGAIKGVARVEELPLDQANRLCKLIPDRAPEGVKH 559

Query: 490  ----QAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                  + ++  FREA ++ +  +   +  +++LEG       HA G++I   P+S +VP
Sbjct: 560  LTLDWMVQNNQEFREASVSQNEQLANTIRYARQLEGTASTTGVHACGVIISGPPVSDVVP 619

Query: 545  MYRDVRSDLP----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599
            +   +  D      V Q+  K IE  GLIK DFLGL+TL+++  +L  +    G+ +D+ 
Sbjct: 620  LSTAIDPDTNERKLVAQYEGKVIEPTGLIKMDFLGLQTLSIINDALQNIKMSYGIDLDID 679

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +T+ L +   T+G FQ ES GMR+ L+ ++P   +D++A+ +LYRPGP+DNI 
Sbjct: 680  TIPVDDPKTFELYSRGDTVGTFQFESPGMRKYLQQLEPTEFKDLVAMNALYRPGPMDNIP 739

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RK G+++I    P ++P LK+T G+ +YQEQVM ++++L  ++  ++D LR+AMGK
Sbjct: 740  TFIERKLGRQEITYDLPEMEPYLKDTYGITVYQEQVMILSRVLGDFTRGDSDSLRKAMGK 799

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K ++EM K + +F+      G  +     I++   KFA Y FNKSH+  YA ++YQTA++
Sbjct: 800  KKEKEMAKYRIKFVENGVAKGHPRDTLERIYDGWQKFASYAFNKSHSVCYAWVAYQTAYL 859

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP +F+AA +T      +K+ K+ ++ +   +++  P VN     F    +  I + 
Sbjct: 860  KAHYPAQFMAALLTCNQSKSDKLTKYLEEVQHMGLEVKGPDVNESFTAFSANKEGVIRFG 919

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L  I  VG + A  I+ E      +  + DF  R D    +RR LE+L+ +GA D FG  
Sbjct: 920  LGGISHVGLSVAEAIIQEREEHGAYQDVYDFFQRTDLSNCSRRALEALILSGAFDNFGIE 979

Query: 898  RMQLLQS-----------------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
            R                       L  + +Y + +E  RT    ++F     +      L
Sbjct: 980  REVYFAPIAKSGVSSLSYGKDETFLTALMQYGKILESERTQVQASLFGDSDPSVKLPKPL 1039

Query: 941  EKFSVENSS--VRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                VE  S   R   EQ  +G Y S HPLD Y  I+  +
Sbjct: 1040 PPKDVEPWSHLERLTKEQTYIGMYLSAHPLDPYAFIIENL 1079


>gi|281423616|ref|ZP_06254529.1| DNA polymerase III, alpha subunit [Prevotella oris F0302]
 gi|281402168|gb|EFB32999.1| DNA polymerase III, alpha subunit [Prevotella oris F0302]
          Length = 1235

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 376/1127 (33%), Positives = 571/1127 (50%), Gaps = 127/1127 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS-------QKAC 63
            F+HL VH+ YS+L+G   ++N+++K   +    +AITD   +F   EF+       +K  
Sbjct: 4    FIHLHVHTYYSVLDGQSKISNLVNKAVENGMKGMAITDHGVMFGIKEFADYCAGVNKKRK 63

Query: 64   AAGIQP---IIGCQLDI---DMQDNLKM--TNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            A G++P   I+GC++ +    +QD +K    N G         +++L     GY+ LI+L
Sbjct: 64   ADGLEPFKPILGCEMYVARHRLQDKVKEHGDNSGY-------HLIVLAKNYNGYKNLIKL 116

Query: 116  VSRMYLLDQG----KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            VS+ ++  +G     ++ R+ L    E   E LI+ +   +G +      +  + A +  
Sbjct: 117  VSKSWM--EGYYYRPRTDRVEL----EKYHEDLIVCSACIAGEVPSKIIKDDLEGAREAC 170

Query: 172  LTFKKLFGDRLYVNLQRHRGYD----RYRES---------QVVQLAYTHELPLVATNNSL 218
              + ++FGD  Y+ LQRH   D      RE+          +++ A  + + ++ TN+  
Sbjct: 171  EWYHRVFGDDYYLELQRHEVKDPTILANREAFPLQQKANKVLLEFAKEYGIKVICTNDVH 230

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            F  +E  EAHD L+ ++    +   +R R +   + K R EM  IFSD+PEAL NT+EI 
Sbjct: 231  FEDKETAEAHDHLLCLSTGKDLDDPNRMRYSKQEWFKTREEMNDIFSDVPEALSNTLEIF 290

Query: 279  RRCSFILQVHAPILP----------------RFIEKEC-----------DDIQKEEENEL 311
             +       H PI+P                +F E +            + + +EE  ++
Sbjct: 291  DKVELYSIEHGPIMPFFPIPESFGTEEGWRKKFTEADLYREFTSDENGENPLSQEEGQKV 350

Query: 312  -----------RNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYF 357
                       R K  A    +LA     + Y      + R+ ++FEL+V+  M F GYF
Sbjct: 351  IDRLGGYDKIYRIKFEADYLAKLAYDGAKRLYGDPVPDNVREHINFELHVMKTMGFPGYF 410

Query: 358  LIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            LIV DFI  A+ +  + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++P
Sbjct: 411  LIVQDFINAARTDLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLP 470

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D DF  D R +V+R+V +KYGHE  A IIT+ S+  K +++DV R  ++P  + + LC
Sbjct: 471  DIDTDFDDDGRGKVLRWVMDKYGHENCAHIITYASMATKNSIKDVARVERLPLDKSNFLC 530

Query: 477  KLIPNDPAHPVSLQ---AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGI 532
            K IP+     + +    AI      REA ++ DP     ++ ++ LEG  R    HA G 
Sbjct: 531  KAIPDRLPDGLKMNLTNAIKCTPELREAEVSQDPRERNTIKYAKMLEGTVRGTGIHACGF 590

Query: 533  VIGDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            +I   P+S  VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++  
Sbjct: 591  IICRDPISNWVPVSTADDPDFPGLKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACK 650

Query: 588  FLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             + +  G  +DL  IP DD  TY L     T+G FQ ES GM++ L  + P   ED+IA+
Sbjct: 651  VVKKTVGDDIDLDNIPIDDELTYQLYQQGRTIGTFQFESPGMQKYLRELHPTVFEDLIAM 710

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
             +LYRPGP+D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++
Sbjct: 711  NALYRPGPMDYIPDFIKRKNDPTLVTYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFT 770

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
              E+D LR+AMGKK K  +D  K +FI    +NG    +   I+    KFA Y FNKSHA
Sbjct: 771  RGESDALRKAMGKKKKAIVDAMKPKFIKQGQENGHDPKVLEKIWGDWEKFASYAFNKSHA 830

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
              Y+ ++YQTA+MK HYP E++AA MT     + +I K  ++ +   I  + P VN    
Sbjct: 831  TCYSWVAYQTAYMKAHYPAEYMAALMTRRFSQITEITKLMEECQSMKIATLGPDVNESYS 890

Query: 827  DFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +F V     I + L+AIKG+G T A  I+ E   + P+  + DF  RVD   +NR+  ES
Sbjct: 891  EFGVNKKGEIRFGLSAIKGMGETAALSIVKERETNGPYKDIYDFAERVDYGCVNRKAFES 950

Query: 885  LVFAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEK------ 931
            L  +G  D F + R Q   +       LD + +Y Q  ++ +     ++F  E       
Sbjct: 951  LALSGGFDGFEFRREQYFAAGMKGDVFLDTLVRYGQLYQQEQREAKNSLFGGESAVEISR 1010

Query: 932  ---GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE--- 985
               G   D  T+E         R   E+ ++G Y S HPLD Y  IL+ M      E   
Sbjct: 1011 PVPGNAEDWSTIE---------RLNRERDLVGIYLSAHPLDEYGVILKSMCNTHCVEIDK 1061

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 +   I +  +V   + K T+ G   G+VT  +     E  FF
Sbjct: 1062 KEELAKKEEISIGGIVTGVKSKFTKNGKPCGFVTLEDFEGSGELAFF 1108


>gi|256847144|ref|ZP_05552590.1| DNA polymerase III [Lactobacillus coleohominis 101-4-CHN]
 gi|256715808|gb|EEU30783.1| DNA polymerase III [Lactobacillus coleohominis 101-4-CHN]
          Length = 1114

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 348/1036 (33%), Positives = 563/1036 (54%), Gaps = 67/1036 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S   L V S+YSLL+  +   +++         AIA+TD N L+ A++F   A  AGI+P
Sbjct: 5    SVTPLDVTSTYSLLQSTIRPRDLVKAAREQGYSAIALTDENVLYGAVDFYNAAQQAGIRP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +   +     ++ KT      ++ ++    +GY  L++L S   +  + + +V
Sbjct: 65   IIGLKLQLTFAE----LDERKT------TVTVIEKNQQGYTELMQL-STQQMTSKAELTV 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-VNLQR 188
            +     +++I    +I+       P       +     +K L  F    GD    +NL  
Sbjct: 114  Q---DVVKQIDNCAIII------KPTMAILTAHRDPTIQKLLSWFGNQPGDIFMGINLV- 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247
                D      +  L+  + L L+A     +L    Y    VL A+     + S      
Sbjct: 164  ---LDPTERQVLKDLSLQNGLKLIADEPVEYLEANQYFPTQVLRAIGDGRQIESPLSTAH 220

Query: 248  VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             T  HYL+N   +   +  + L +A+EN   + ++ SF +    P+LP F   E  +  +
Sbjct: 221  NTGQHYLRNAQNLTVAYERAGLADAVENNEVLVQKSSFKINFQKPVLPEFAVPEGVNTAQ 280

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 LR   + GL+ R     +A     + YR RL+ EL VI +M F  YFLIV D + 
Sbjct: 281  Y----LRQLCIIGLKKR----HLAPNTTIKQYRDRLERELTVIHQMGFDDYFLIVWDIMA 332

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A +  I  GPGRGS AGS+ AYAL ITD+DPL + LLFERFLNP+R  MPD D+D   +
Sbjct: 333  FAHRKQITTGPGRGSAAGSLVAYALAITDVDPLEYGLLFERFLNPERAQMPDIDLDIPDN 392

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EV+ YV  +YGHERVAQIITFG+L A+  +RDVGR   +P  QV+++   +     H
Sbjct: 393  RRQEVLEYVHQRYGHERVAQIITFGTLAARQVVRDVGRVFGVPKYQVEQIIDTLRVLSRH 452

Query: 486  -PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              V+L +AI      R     DP    ++E+++KLEGL RH STHAAG+V+   PL ++V
Sbjct: 453  RSVTLAEAIQQSQPLRNLMTDDPINKLVIEVARKLEGLPRHYSTHAAGVVLSATPLKEIV 512

Query: 544  PMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            P+   +  + L +TQF  + +E  GL+K DFLGL+ L+++ ++L  + Q     D++ +P
Sbjct: 513  PLQPGNDEAGLLMTQFPKEIVESVGLLKMDFLGLRNLSIMDRALAIIHQTTPGFDITKVP 572

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +DH+T  L     T GIFQ ES+G+RQ L+ + PD  EDI+A+ +LYRPGP+ NI  + 
Sbjct: 573  LNDHKTIQLFKQGLTDGIFQFESTGIRQTLQQLAPDNFEDIVAVNALYRPGPMQNIPHFI 632

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G+E I      + P+L  T G+++YQEQVMQ+A  ++G+SL +AD+LRRAM KK +
Sbjct: 633  ARKHGQEPIQLPDQSLQPILGPTYGILVYQEQVMQVASKMAGFSLGQADLLRRAMSKKKQ 692

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              M+  ++RFISGA KNG ++ IA  +F  + +FA+YGFN+SHA AY+ ++Y+ A++K H
Sbjct: 693  ATMESMRQRFISGAVKNGYNQPIAEQVFNYIDQFANYGFNRSHAVAYSKMAYEMAYLKCH 752

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            +   F  A + +E  N++K++    DA++F ++I+ P++N   +++ + + +I    + I
Sbjct: 753  FTTAFFTALLAIE-PNMDKVRLHLADAQRFGVRIIGPNINQSQMEYSLQNGQIVMGFSMI 811

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KG+     + I+E      F +L DF  R+  K     ++E L++AGA D  GY+R +++
Sbjct: 812  KGMRRDFIQAIIEERKAGQFKNLPDFVQRLGEKWQKAALIEPLIYAGAFDQLGYNRAEMI 871

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--SDKITLEKFSVENS-SVRFENEQRVL 959
            + L  +                  FA  + +F  +D   + K   E   + R + EQ  L
Sbjct: 872  EGLSGV------------------FAGNEFSFQSADLQPIMKRRQEYPLTYRLQKEQEYL 913

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSR-IGW 1017
            G Y SGHP+  Y+ + ++     + + +  ++ G++++L  ++   +Q  T+K  + + +
Sbjct: 914  GMYLSGHPVTQYQRVRQQQ----HTQRIMDLKPGSSVKLLVLLNQIRQINTKKTHQPMAF 969

Query: 1018 VTFSEPAKEYEANFFP 1033
             T S+     +   FP
Sbjct: 970  ATASDETGSMDITIFP 985


>gi|323464219|gb|ADX76372.1| DNA polymerase III subunit alpha [Staphylococcus pseudintermedius
            ED99]
          Length = 1063

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 351/1024 (34%), Positives = 543/1024 (53%), Gaps = 84/1024 (8%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL +H++Y LL  ++++   + +       AIAITD N ++   +F       GI+P++G
Sbjct: 4    HLNIHTAYDLLNSSITIEGAVQRTIELGYSAIAITDLNVMYGVPQFYDACIQHGIKPLLG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              + +  Q N             V   V++    EG Q L +L S             I 
Sbjct: 64   MTVYLTDQLN-------------VLEAVVIAKNNEGLQNLFKLSSD------------IK 98

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            ++ ++ +                ++   FN +      ++ FK++     + + +   G 
Sbjct: 99   VNRIKHVSI-------------YEKKDLFNDT------VVIFKQMTNQEKHWHEEMPDGV 139

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
              + + Q  +     ELP V    + +   ED  A  VL A+  +T V+  D      +H
Sbjct: 140  TCFTDHQSAEDC---ELPKVLMQAAYYEKTEDKNALKVLHAIRDNTKVNLVDSHETPTEH 196

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
                 +   S F++    L  T EIA  C   L+ H  +LP F+  +             
Sbjct: 197  IYDVDALYDSQFAE--AWLARTDEIANMCDAKLEYHQALLPEFVTPDG------------ 242

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            + A A L   L +     G     YR+RL +E +VI +M ++ YFLIV+D I++AK N +
Sbjct: 243  SSANAYLWAELERALADFGLTEARYRKRLKYEYDVITQMGYADYFLIVSDLIRYAKSNGV 302

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS+ +Y L IT IDPL++ LLFERFLNP+R++MPD DIDF   +R++VI 
Sbjct: 303  MVGPGRGSSAGSLVSYLLNITTIDPLQYDLLFERFLNPERVTMPDIDIDFEDTQREKVIH 362

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YVQ KYG  RVA I+TFG L AKA  RDVGR +    + +    KLIP+     V+L   
Sbjct: 363  YVQQKYGDYRVAGIVTFGHLLAKAVARDVGRVMGFDETTLSEASKLIPSKLG--VTLDEA 420

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
              + RF+     +   +R  E  +KLEGL R+ STHAAG+++ D+PL Q +P+       
Sbjct: 421  YKEERFKAFVHRNHRHERWFEYCKKLEGLPRNTSTHAAGVIVNDQPLYQSIPLTEGETGL 480

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IPFDDHETYH 610
            L  TQ+ M   E+ GL+K DFLGL+ LT++ + +  +  R +KVD+ +  IPFDD   + 
Sbjct: 481  L--TQWTMTEAERIGLLKIDFLGLRNLTIIHQIIKQVT-RDLKVDIDVEQIPFDDVHVFE 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R+ L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++   +
Sbjct: 538  LLSRGDTTGIFQLESEGVRRVLQKLQPEHFEDIVAVTSLYRPGPMEEIPTYIRRRHDPSQ 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP + P+LK T GVIIYQEQ+MQIA   +G+S  EAD+LRRAM KK +E ++ +++
Sbjct: 598  VTYLHPDLAPILKRTYGVIIYQEQIMQIASQFAGFSYGEADILRRAMSKKNREVLENERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI GA + G ++T++  IF+L+ KFADYGF ++HA +Y+ I+Y   ++K HYP  F A 
Sbjct: 658  HFIDGAKEKGYAETLSGQIFDLILKFADYGFPRAHAVSYSKIAYIMTYLKVHYPAYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + N  K     Q+A+Q +I I  P +N     +      +Y SL AIKGVG  T 
Sbjct: 718  ILSNVIGNDMKTNMMIQEAKQQHITIHGPHINKSQWRYVATQEGVYISLGAIKGVGYQTV 777

Query: 851  RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + IM E     P+    DFC+R+ S+  +RR LE+L+  GA+DCFG +R  LLQS+D   
Sbjct: 778  QTIMNERREQGPYKDFFDFCNRIPSRLRSRRTLEALILTGAMDCFGKNRATLLQSIDK-- 835

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 V     +   ++ A       +    E+   +  S   + E++ LGFY + HP++
Sbjct: 836  -----VSDTDVSIDTDLLASVATIKQEYAETEEMPSQQLS---DFEKQYLGFYVTAHPVE 887

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                  + +GI   +  V T +   + L A+ V     +T++G ++ +V  ++     + 
Sbjct: 888  KAFKQKQYLGIFQLQAHV-THQPILVTLDAVRVI----RTKQGQQMAFVELNDGITTMDG 942

Query: 1030 NFFP 1033
              FP
Sbjct: 943  VIFP 946


>gi|328881766|emb|CCA55005.1| DNA polymerase III alpha subunit [Streptomyces venezuelae ATCC 10712]
          Length = 1179

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 363/1077 (33%), Positives = 571/1077 (53%), Gaps = 74/1077 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VH+ YSLL+GA  L ++ +         IA++D  NL  A +F   A  AG+ 
Sbjct: 4    PPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHSAKKAGVT 63

Query: 69   PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVS 117
            PIIG +  +  + + N +    G+ P      +          +  +   G   L  L S
Sbjct: 64   PIIGIEAYVAPESRRNKRKIQWGQ-PHQKRDDVSGSGGYTHKTIWAANNTGLHNLFRLSS 122

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              Y     ++  R+    + +  +EGLI  TG  SG +           A K    ++ +
Sbjct: 123  DAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGELQTRLRLGQFDEALKSASEYQDI 181

Query: 178  FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG DR ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+ + 
Sbjct: 182  FGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEAAAHDALLCIQ 241

Query: 236  HSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSF-ILQVHAPI 291
                +S  DR R     +YLK+  EM ++ S     E   NT+ +A + S   + V   +
Sbjct: 242  TGKNLSDPDRFRFDGTGYYLKSTDEMYAVDSSDAWQEGCRNTLLVAEQVSTDGMFVEKNL 301

Query: 292  LPRFIEKECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
            +P+F      DI +   E    R + + G+  R   G        +D  +++++E++ I 
Sbjct: 302  MPKF------DIPEGYTEVTWFREETMRGMHRRFPDGI------PEDRMKQVEYEMDTII 349

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M F GYFL+VADFI WAKK  I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLN
Sbjct: 350  SMGFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLN 409

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY
Sbjct: 410  PERISMPDVDIDFDERRRVEVIRYVTEKYGSDKVAMIGTYGKIKAKNAIKDSARVLGYPY 469

Query: 470  SQVDRLCKLIPNDP-AHPVSLQAIADDS--RFREARLA------DPSVDRLLEISQKLEG 520
            +  DRL K +P D     + L  I D S  R+ EA         +P V ++++ ++ +EG
Sbjct: 470  AMGDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRAMYENEPDVKKVIDTARGVEG 529

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ LT
Sbjct: 530  LVRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLT 589

Query: 581  LLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  ++  + A +G+ +DL  +P DD +T+ LL    TLG+FQ +   MR  L  M+PD 
Sbjct: 590  IMDDAVKMVKANKGIDLDLLALPLDDPKTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDN 649

Query: 640  IEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQE 693
             EDI A+ +LYRPGP  +++   Y  RKNG+++I  IHP ++  L+E    T G+I+YQE
Sbjct: 650  FEDISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEKPLEEVLAVTYGLIVYQE 709

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F +GA K G S      ++++L
Sbjct: 710  QVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVIFEAGAKKKGFSDEAIKALWDVL 769

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNK+H+AAY ++SY TA++K +YP E++A  +T   D+ +K   +  + R+  
Sbjct: 770  VPFAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAGLLTSVKDDKDKSAVYLNECRRMG 829

Query: 814  IQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871
            I+++PP+VN    +F   GD+ I + L+A++ VGT     I++   A   + +  DF  +
Sbjct: 830  IKVLPPNVNESESNFAAQGDDVILFGLSAVRNVGTNVVESIIKTRKAKGKYSTFPDFLDK 889

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V++   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F    
Sbjct: 890  VEAVVCNKRTIESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVAVKRKEAEGQFDLF---- 945

Query: 932  GTFSDKITLEK---FSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGIKG 982
            G   D+ T E      VE S V +E       E+ +LG Y S HPL   + +L       
Sbjct: 946  GGMGDESTDEPGFGLDVEFSDVEWEKSYLLAQEREMLGLYVSDHPLFGIEHVLSDK---- 1001

Query: 983  YEESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + +++ + G        + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1002 TDAAISQLTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|311899295|dbj|BAJ31703.1| putative DNA polymerase III subunit alpha [Kitasatospora setae
            KM-6054]
          Length = 1183

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 359/1071 (33%), Positives = 565/1071 (52%), Gaps = 62/1071 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YS+L+GA     +  +      PAIA++D  N+F A EF   A  + ++P
Sbjct: 4    SFAHLHVHTEYSMLDGAAKNGKLFAEAERLGMPAIAMSDHGNMFGAYEFFHAAAKSAVKP 63

Query: 70   IIGCQLDID-----MQDNLKMTNQGKTPFPT-------------VPSIVLLVSTAEGYQR 111
            IIG +  +      ++  +     G+ P  +                + +    A G + 
Sbjct: 64   IIGIEAYVAPSSRFLKKQVFWAPGGQRPTGSDGEGGKDVSGGGRYTHMTMWAQNATGLRN 123

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L +L S +  ++      R+    +    T G+I  TG  SG +         + A K  
Sbjct: 124  LFKL-SSLASMEGYYMKPRMDRELIAANAT-GIIATTGCPSGEVQTRLRLGQYEEAVKAA 181

Query: 172  LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              ++ +FG +  ++ L  H    +R   + +++LA    +PL+ATN+S +++ +  +AHD
Sbjct: 182  GAYQDIFGKENYFLELMDHGLSIERDVRADLLRLAKELGIPLLATNDSHYVTADQADAHD 241

Query: 230  VLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
             L+ V    V   KD P         +Y+K   EM  +F DLPEA +NT+ IA R     
Sbjct: 242  SLLCVG---VGKNKDDPNRFKFNGSGYYVKTSEEMRELFRDLPEACDNTLAIAERIESYE 298

Query: 286  QVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            +V   +  +P+F   E +     + + LR K  AGL+ R           +Q+   R++ 
Sbjct: 299  EVFTYVDRMPQFDVPEGE----TQASFLRKKIAAGLQHRYGDNP------SQEVLDRVEL 348

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            E+ VI  M F  YFL+VAD  Q+ + N IPVGPGRGS AGS+ +Y   IT +DPL   LL
Sbjct: 349  EMGVITPMGFDAYFLVVADICQYGRDNGIPVGPGRGSAAGSMVSYLTGITQLDPLEHDLL 408

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R++ PD DIDF   +RD+++RYV +KYG    AQ+ TFG+++AKAA++D  R
Sbjct: 409  FERFLNPERINPPDVDIDFDDRQRDQMVRYVTDKYGSAYTAQVNTFGTIKAKAAVKDANR 468

Query: 464  ALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADD--------SRFREARLADPSVDRLLEI 514
             L  P+S  DR+ K +P D     V L  + ++        +  R     +P V ++++ 
Sbjct: 469  ILGYPFSMGDRITKAMPPDVMGKGVPLADLFNEKHPRYNEGTEIRSLYENEPDVKKIIDT 528

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
               +EGL R    HAA +++   PL +L+P++   +    +T F+    E  GLIK DFL
Sbjct: 529  GLGIEGLIRGTGVHAAAVILSSTPLLELIPLHMRDKDGTIITGFDYPSCEAMGLIKMDFL 588

Query: 575  GLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ L ++   +  + A RGV VD+  IP DD  TY LL    TLG+FQL+   MR  L 
Sbjct: 589  GLRNLGIIDHCIKIVKANRGVDVDIDNIPIDDPTTYQLLARGDTLGVFQLDGGPMRALLR 648

Query: 634  GMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQG 687
             M+P    DI A+ +LYRPGP  +++   Y  RKNG+++I+ IHP ++  LKE    T G
Sbjct: 649  LMKPTEFADISAVSALYRPGPMGMNSHTNYALRKNGQQEIIPIHPELEEPLKEVLGPTYG 708

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQV + AQ+L+GYSL +AD+LRRAMGKK KE ++K+   F +G  + G S     
Sbjct: 709  LIVYQEQVQRAAQVLAGYSLGQADLLRRAMGKKKKEVLEKEFVPFHAGCKERGYSDEAIQ 768

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++++L  FA Y FNKSH+AAY ++SYQTA++K +YP E++AA +T   D+ +K+  +  
Sbjct: 769  AVWDVLVPFAGYAFNKSHSAAYGLVSYQTAYLKANYPAEYMAALLTSVADDKDKMAIYLA 828

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLE 866
            + R   I+I+ P VN   VDF    + + + L A++ VG      ++    A   + S  
Sbjct: 829  ECRAMGIRILSPDVNESVVDFTAVGSDVRFGLKAVRNVGVPVIESLVATREAKGKYTSFA 888

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF  +V+    N+R ++SLV AGA D  G++R+ L    ++       V+K +    +++
Sbjct: 889  DFLDKVELVVCNKRTVDSLVKAGAFDSLGHTRLSLSTVHESAIDAVTGVKKQQAIGQDDL 948

Query: 927  FAHEKGTFSDKITLEKFSVENSSVR---FENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            FA   G  +  I L+    +    R      E+ +LG Y S HPLD  + IL K      
Sbjct: 949  FAMLGGDDTPAIGLDFQLTDREWPRKQLLGLEREMLGLYVSSHPLDGAEHILTKNRDVSL 1008

Query: 984  EESVATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + + + R    +RL+ ++    ++  + G+    +T ++     E  FFP
Sbjct: 1009 VDLLNSGRTEGEVRLSGLITGVDRRINKAGNAWAIITLADRDGSIEVLFFP 1059


>gi|319892748|ref|YP_004149623.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
            HKU10-03]
 gi|317162444|gb|ADV05987.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
            HKU10-03]
          Length = 1063

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 351/1024 (34%), Positives = 543/1024 (53%), Gaps = 84/1024 (8%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL +H++Y LL  ++++   + +       AIAITD N ++   +F       GI+P++G
Sbjct: 4    HLNIHTAYDLLNSSITIEGAVQRTIELGYSAIAITDLNVMYGVPQFYDACIQHGIKPLLG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              + +  Q N             V   V++    EG Q L +L S             I 
Sbjct: 64   MTVYLTDQLN-------------VLEAVVIAKNNEGLQNLFKLSSD------------IK 98

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            ++ ++ +                ++   FN +      ++ FK++     + + +   G 
Sbjct: 99   VNRIKHVSI-------------YEKKDLFNDT------VVIFKQMTNQEKHWHEEMPDGV 139

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
              + + Q  +     ELP V    + +   ED  A  VL A+  +T V+  D      +H
Sbjct: 140  TCFTDHQSAEDC---ELPKVLMQAAYYEKAEDKNALKVLHAIRDNTKVNLVDSHETPTEH 196

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
                 +   S F++    L  T EIA  C   L+ H  +LP F+  +             
Sbjct: 197  IYDVDALYDSQFAE--AWLARTDEIANMCDAKLEYHQALLPEFVTPDG------------ 242

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            + A A L   L +     G     YR+RL +E +VI +M ++ YFLIV+D I++AK N +
Sbjct: 243  SSANAYLWAELERALADFGLTEARYRKRLKYEYDVITQMGYADYFLIVSDLIRYAKSNGV 302

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS+ +Y L IT IDPL++ LLFERFLNP+R++MPD DIDF   +R++VI 
Sbjct: 303  MVGPGRGSSAGSLVSYLLNITTIDPLQYDLLFERFLNPERVTMPDIDIDFEDTQREKVIH 362

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YVQ KYG  RVA I+TFG L AKA  RDVGR +    + +    KLIP+     V+L   
Sbjct: 363  YVQQKYGDYRVAGIVTFGHLLAKAVARDVGRVMGFDETTLSEASKLIPSKLG--VTLDEA 420

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
              + RF+     +   +R  E  +KLEGL R+ STHAAG+++ D+PL Q +P+       
Sbjct: 421  YKEERFKAFVHRNHRHERWFEYCKKLEGLPRNTSTHAAGVIVNDQPLYQSIPLTEGETGL 480

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IPFDDHETYH 610
            L  TQ+ M   E+ GL+K DFLGL+ LT++ + +  +A R +KVD+ +  IPFDD   + 
Sbjct: 481  L--TQWTMTEAERIGLLKIDFLGLRNLTIIHQIIKQVA-RDLKVDIDVEQIPFDDVHVFE 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R+ L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++   +
Sbjct: 538  LLSRGDTTGIFQLESEGVRRVLQKLQPEHFEDIVAVTSLYRPGPMEEIPTYIRRRHDPSQ 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP + P+LK T GVIIYQEQ+MQIA   +G+S  EAD+LRRAM KK +E ++ +++
Sbjct: 598  VTYLHPDLAPILKRTYGVIIYQEQIMQIASQFAGFSYGEADILRRAMSKKNREVLENERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI GA + G ++T++  IF+L+ KFADYGF ++HA +Y+ I+Y   ++K HYP  F A 
Sbjct: 658  HFIDGAKEKGYAETLSGQIFDLILKFADYGFPRAHAVSYSKIAYIMTYLKVHYPAYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + N  K     Q+A+Q +I I  P +N     +      +Y SL AIKGVG  T 
Sbjct: 718  ILSNVIGNDTKTNMMIQEAKQQHITIHGPHINKSQWRYVATQEGVYISLGAIKGVGYQTV 777

Query: 851  RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + IM E     P+    DFC+R+  +  +RR LE+L+  GA+DCFG +R  LLQS+D   
Sbjct: 778  QTIMNERREQGPYKDFFDFCNRIPGRLRSRRTLEALILTGAMDCFGKNRATLLQSIDK-- 835

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 V     +   ++ A       +    E+   +  S   + E++ LGFY + HP++
Sbjct: 836  -----VSDTDVSIDTDLLASVATIKQEYAETEEMPSQQLS---DFEKQYLGFYVTAHPVE 887

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                  + +GI   +  V T +   + L A+ V     +T++G ++ +V  ++     + 
Sbjct: 888  KAFKQKQYLGIFQLQAHV-THQPILVTLDAVRVI----RTKQGQQMAFVELNDGITTMDG 942

Query: 1030 NFFP 1033
              FP
Sbjct: 943  VIFP 946


>gi|325270548|ref|ZP_08137148.1| DNA-directed DNA polymerase III alpha subunit [Prevotella multiformis
            DSM 16608]
 gi|324987124|gb|EGC19107.1| DNA-directed DNA polymerase III alpha subunit [Prevotella multiformis
            DSM 16608]
          Length = 1239

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 374/1109 (33%), Positives = 565/1109 (50%), Gaps = 107/1109 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA------ 64
            +VHL VH++YS+L+G   +  ++DK  AD    +AITD   +F   EFS   CA      
Sbjct: 4    YVHLHVHTNYSILDGQSKVTRLVDKAVADGMKGMAITDHGVMFGIKEFSD-YCAKVNKGR 62

Query: 65   -----AGIQPIIGCQLDI---DMQDNLK--MTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
                 A  +P+ GC++ +    M D  K    N G         +++L     GY+ LI+
Sbjct: 63   KEKGEAPFKPVFGCEMYVARRSMHDKDKGMHDNSGY-------HLIVLAKNHHGYKNLIK 115

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS+ ++ D      R     L++   E LI+ +   +G I      +  + A +    +
Sbjct: 116  LVSKAWV-DGYYYKPRTDREQLEKY-HEDLIVCSACIAGEIPSKIIHDDIEGAREACEWY 173

Query: 175  KKLFGDRLYVNLQRHRGYD----RYRESQVVQ---------LAYTHELPLVATNNSLFLS 221
             ++FGD  Y+ LQRH   D      RE+  +Q          A  + + ++ TN+  F  
Sbjct: 174  HRVFGDDFYLELQRHEVKDPTLAANREAYPLQQKANRVLLRFAREYGIKVICTNDCHFED 233

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            +E  EAHD L+ ++ +  +    R R +   + K R EM  +FSD+PEAL NT+EI  + 
Sbjct: 234  KETAEAHDHLLCISTNEDLDDPKRMRYSKQEWFKTRQEMNEVFSDIPEALTNTLEILDKV 293

Query: 282  SFILQVHAPILPRF-------IEKEC------DDIQKE---EEN-------ELRNKAVAG 318
                  H PI+P F        E E       DD+ +E   +EN       E   K +A 
Sbjct: 294  EIYSIDHGPIMPFFPIPEDFGTEGEWREKFSEDDLYREFTTDENGEHPLPPEEGQKVIAR 353

Query: 319  LE---------------VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIV 360
            L                 +LA     + Y    + + +  + FEL+V+  M F GYFLIV
Sbjct: 354  LGGYEKIYRIKFEADYLAKLAYDGAKRLYGDPLSDEVKNHIRFELHVMKTMGFPGYFLIV 413

Query: 361  ADFIQWAK-KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
             DFI  A+ K  + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D
Sbjct: 414  QDFINAAREKLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDID 473

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
             DF  D R +V+++V +KYGHE  A IIT+ ++  K +++DV R  ++P    + LCK I
Sbjct: 474  TDFDDDGRGKVLQWVMDKYGHENCAHIITYSTMATKNSIKDVARVERLPLDVANGLCKAI 533

Query: 480  PNDPAHPVSLQ---AIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIG 535
            P+     + +    AI    R ++A +++ + +R  ++ ++ LEG  R    HA G +I 
Sbjct: 534  PDRLPDGMKMNLTNAIRCTPRLQDAEVSEDARERNTIKYAKMLEGTVRGTGIHACGFIIC 593

Query: 536  DRPLSQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
              P+   VP+      D     +PVTQ++   IE  GLIK DFLGLKTL+ L+++   + 
Sbjct: 594  RNPIDDWVPVSTASDPDFPEQKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVIR 653

Query: 591  QR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            Q  G  VDL  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +L
Sbjct: 654  QTTGDVVDLDNIPIDDELTYRLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNAL 713

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP+D I  +  RK+    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  E
Sbjct: 714  YRPGPMDYIPDFIKRKHDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGE 773

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            +D LR+AMGKK K  +D+ K +FI    +NG    I   I+    KFA Y FNKSHA  Y
Sbjct: 774  SDALRKAMGKKKKAIVDQMKPKFIRQGQENGHDPQILEKIWSDWEKFASYAFNKSHATCY 833

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            + ++YQTA++K HYP E++AA MT     + +I K  ++ +   I  + P VN     F 
Sbjct: 834  SWVAYQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKAMKIATLGPDVNESRTGFG 893

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V G   I + LAAIKG+G + A  I+ E  A+ P+  + DF  RVD   +NR+  ESL +
Sbjct: 894  VNGKGEIRFGLAAIKGMGASAAESIVREREANGPYKDIYDFAERVDLSNVNRKAFESLAY 953

Query: 888  AGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
            +G  D FG  R Q           LD I +Y Q  +  +  +  ++F             
Sbjct: 954  SGGFDSFGLQREQYFAETGKGSLFLDTIVRYGQLYQAEKAEQQNSLFGGMDAVEVMHPVA 1013

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK-----GYEESVATIRG-NN 994
             K     +  +   E+ ++G Y S HPLD Y  IL  M        G +  +A +   + 
Sbjct: 1014 PKTENWPAIEKLNKERELVGIYLSAHPLDEYSVILNNMCNTRCPQIGRDADLAALSALDE 1073

Query: 995  IRLAAMVVSKQQKKTRK-GSRIGWVTFSE 1022
            +    +V +  ++ ++K G   G+VT  +
Sbjct: 1074 VTFGGIVTAVNERFSQKTGKPFGFVTIED 1102


>gi|302345204|ref|YP_003813557.1| putative DNA polymerase III subunit alpha [Prevotella melaninogenica
            ATCC 25845]
 gi|302149818|gb|ADK96080.1| putative DNA polymerase III subunit alpha [Prevotella melaninogenica
            ATCC 25845]
          Length = 1239

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 372/1114 (33%), Positives = 568/1114 (50%), Gaps = 117/1114 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            +VHL VH++YS+L+G   +  ++DK  AD    +AITD   +F   EF+           
Sbjct: 4    YVHLHVHTNYSILDGQSKVTRLVDKAIADGMKGMAITDHGVMFGIKEFADYCAKVNKGRK 63

Query: 67   ------IQPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
                   +PI GC++ +    M D  K  +       +   +++L     GY+ LI+LVS
Sbjct: 64   EKGEEPFKPIFGCEMYVARRTMHDKDKSMHDN-----SGYHLIVLAKNYTGYKNLIKLVS 118

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              ++ D      R     L++   EGLI+ T   +G +      +  + A +    + ++
Sbjct: 119  NAWV-DGYYYRPRTDREQLEKY-HEGLIVCTACIAGEVPNKIIHDDIEGAREACEWYHRV 176

Query: 178  FGDRLYVNLQRHRGYD----RYRESQVVQ---------LAYTHELPLVATNNSLFLSEED 224
            FGD  Y+ LQRH   D      RE+  +Q          A  + + +V TN+  F  +E 
Sbjct: 177  FGDDFYLELQRHEVKDPSLVANREAYPLQQKANKVLMKFAQEYGIKIVCTNDCHFEDKET 236

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
             EAHD L+ ++ +  +    R R +   + K R+EM  IFSD+PEA+ NT+EI  +    
Sbjct: 237  AEAHDHLLCLSTNEDLDDPKRMRYSKQEWFKTRAEMNEIFSDIPEAMTNTLEILNKVETY 296

Query: 285  LQVHAPILPRF-------IEKEC------DDIQKE------EENEL-------------- 311
               H PI+P F        E+E       +D+ KE       EN L              
Sbjct: 297  DINHGPIMPFFPIPEDFGTEEEWKKKFTEEDLYKEFTTDENGENPLPPEEGQKVIDRLGG 356

Query: 312  -----RNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                 R K  A    +LA     K Y    + + +  + FEL+V+  M F GYFLIV DF
Sbjct: 357  YEKMYRIKFEADYLAKLAYDGAKKLYGDPLSDEVKNHIRFELHVMKTMGFPGYFLIVQDF 416

Query: 364  IQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            I  A++  ++ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF
Sbjct: 417  INAARQELDVMVGPGRGSAAGSVVAYCLGITQIDPLKYDLLFERFLNPDRVNLPDIDTDF 476

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D R  V+++V +KYGHE  A IIT+ ++  K +++DV R  ++P    + LCK IP  
Sbjct: 477  DDDGRGRVLQWVMDKYGHENCAHIITYSTMATKNSIKDVARVEKLPVDVSNALCKAIPER 536

Query: 483  PAHPVSLQ---AIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRP 538
              + + +    AI      + A +++   +R  ++ ++ LEG  R    HA G +I   P
Sbjct: 537  LPNGMKMNLTNAIKCTPELQNAEVSEDIRERNTIKYAKMLEGTVRGTGIHACGFIICRNP 596

Query: 539  LSQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
            + + VP+      D     +PVTQ++   IE  GLIK DFLGLKTL+ L+++   + Q R
Sbjct: 597  IDEWVPISTATDPDFPEKKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVVKQTR 656

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G  +DL  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +LYRP
Sbjct: 657  GDVIDLEKIPIDDELTYQLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNALYRP 716

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP+D I  +  RK+    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+D 
Sbjct: 717  GPMDYIPDFIKRKHDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESDA 776

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LR+AMGKK+K  +DK K +FI    +NG    I   I+    KFA Y FNKSHA  Y+ +
Sbjct: 777  LRKAMGKKMKAIVDKMKPKFIKQGQENGHDPQILEKIWSDWEKFASYAFNKSHATCYSWV 836

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTA+MK HYP E++AA MT     + +I K  ++ +   I  + P VN   + F V  
Sbjct: 837  AYQTAYMKAHYPAEYMAALMTRRFSQITEITKLMEECKALKIATLGPDVNESQIGFGVNK 896

Query: 833  N-RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            +  I + L+AIKG+G + A  I+ E   + P+  + DF  RVD   +NR+  ESL ++G 
Sbjct: 897  HGEIRFGLSAIKGMGASAADSIVRERMENGPYKDIYDFAERVDLSNVNRKAFESLAYSGG 956

Query: 891  LDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL--- 940
             D FG  R Q           LD I +Y Q  +  +  +  ++F        D I +   
Sbjct: 957  FDSFGLQREQYFAVTAKGDLFLDTIVRYGQLFQAEKAQQQNSLFGG-----MDAIDVVHP 1011

Query: 941  -----EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-----GIKGYEESVATI 990
                 EK+ V     +   E+ ++G Y S HPLD Y  +L  M      + G   ++  +
Sbjct: 1012 IAPKAEKWPVIE---KLNKERELVGIYLSAHPLDEYSVVLNNMCNTRCSMIGRNANMTEL 1068

Query: 991  -RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSE 1022
             + + +    +V S  ++ ++K G   G+VT  +
Sbjct: 1069 AKADEVTFGGIVTSVNERFSQKTGKPFGFVTIED 1102


>gi|294790529|ref|ZP_06755687.1| DNA polymerase III, alpha subunit [Scardovia inopinata F0304]
 gi|294458426|gb|EFG26779.1| DNA polymerase III, alpha subunit [Scardovia inopinata F0304]
          Length = 1187

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 357/1082 (32%), Positives = 567/1082 (52%), Gaps = 72/1082 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  FVHL  H+ YS L+GA+ +  ++  +    Q A+ ITD  N+  A E  + A  
Sbjct: 1    MTSSSDFVHLHNHTDYSTLDGAVPVKKLVQVVKDQGQKAVGITDHGNMHGAYELWRTAVD 60

Query: 65   AGIQPIIGCQLDI--------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
             GI+PIIG +  I          + +     Q         S   +   A+  Q L+ L+
Sbjct: 61   QGIKPIIGIEAYITPGTARGDKTRVHWGTKEQHADDVSANGSYTHMTLWAQNDQGLVNLL 120

Query: 117  SRMY------LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
                      L+ +  +  R  L+   +    G+I  TG  SG +         + A + 
Sbjct: 121  KASSVANLEGLMGRNPRMDRDVLNTYHQ----GIIATTGCPSGAVQTRLRLGQYEQALRE 176

Query: 171  LLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
                + ++G +  YV +  H    ++   + ++++A     PLVATN+S +  EED +A 
Sbjct: 177  ARELQDIYGKENFYVEIMDHGLTIEKRVINDLIRIADNIGAPLVATNDSHYGLEEDAKAQ 236

Query: 229  DVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            D L+ +   + ++  +R       +Y+K+  +M  +F D P+A +NT+EIA RC+ +   
Sbjct: 237  DALLCINSGSRLTDPNRFHFDGSGYYIKSAQQMRELFKDFPQACDNTLEIAERCNVMFDD 296

Query: 288  H--APILPRFIEKECDDIQKEEENELRNKAVA-GLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            H     +P F     D  Q  +   L    V  GLE R   G  A+        ++ D+E
Sbjct: 297  HEDGAFMPEF-----DCPQGWDATSLFLHDVEQGLERRYPDGVPAQ------VARQADYE 345

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
              VI +M+F GYFL+VAD+I WAK + + VGPGRGS AGS+ +YA+ IT++DPL+  L+F
Sbjct: 346  CGVICQMQFCGYFLVVADYINWAKTHGVMVGPGRGSAAGSMVSYAMGITELDPLKHGLIF 405

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+S+PD D+DF    R++V++YV +KYG ++VAQ +T+G+++ K AL+D  R 
Sbjct: 406  ERFLNPERVSLPDIDVDFDPAGREKVLQYVTHKYGADKVAQCVTYGTIKTKQALKDSARI 465

Query: 465  LQMPYSQVDRLCKLIPND-PAHPVSLQAI--------ADDSRFREARLADPSVDRLLEIS 515
            L   +   + + K +P       +SL  I        A+   FR+    +P V ++ E +
Sbjct: 466  LDYEFQMGETITKALPGSVGGKDISLHDIFDPHAKRYAEAQEFRDLYNDNPDVQKITEEA 525

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFL 574
            + +EGL R    HA   ++  +P++   P+ +  R+D  + T F     E  GL+K DFL
Sbjct: 526  KGIEGLIRQTGVHACATIMASQPIANTSPLLK--RTDGTITTTFEYHTCETLGLVKMDFL 583

Query: 575  GLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL  LT+++++L+ +   G   VDL  IP DD  TY LL++  TLG+FQL+S GM+  L+
Sbjct: 584  GLANLTVIKETLNNIKANGKPAVDLEKIPIDDKPTYDLLSSGHTLGVFQLDSDGMQSLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNN---RKNGKEKIVSIHPLID----PMLKETQ 686
             ++PD   DI AL++LYRPGP+D +  +NN   RKNG ++I  IHP ++     +L ET 
Sbjct: 644  QLKPDNFNDISALIALYRPGPMD-VDSHNNYAKRKNGLQEIKPIHPELEKPLASVLDETY 702

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+I+YQEQV   A++L+GYSL  ADVLRRAMGKK  E + K+K  F  G  ++G S+  A
Sbjct: 703  GLIVYQEQVQSAARILAGYSLGRADVLRRAMGKKKPEVLAKEKVPFFEGMKEHGYSQEAA 762

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              ++++L  FA Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +  E  N +K   + 
Sbjct: 763  QAVWDVLVPFAGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGERTNKDKTALYL 822

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM---EASADK-PF 862
             + R+ NIQ++PP VN     +    N I + L A++ VG      I+   E S  K  F
Sbjct: 823  GECRRMNIQVLPPDVNESVSHYSAVGNDIRFGLGAVRNVGDKIVDAIVHEREKSGGKGKF 882

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             S  D+ +R+    LN+R +ESL+  GA D    +R  L    +        +++     
Sbjct: 883  LSFLDWINRMPVSVLNKRTVESLIKGGAFDSIDPNRRALFTIHEAAIDQVVPLKRKEAEG 942

Query: 923  HENIFAHEKGTFSD--------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
              ++FA      S          I++ +    +   +   E+ +LG Y S HPL     +
Sbjct: 943  QFDLFADAGDPSSSSADALGDANISVPQIDEWDKKTKLNFEREMLGLYVSDHPLSGLASV 1002

Query: 975  LRK---MGIKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            L     M I       +T+   N + +AA++ +  ++ +++G     VT  +     +  
Sbjct: 1003 LANLSDMSIPQLLNKASTMPDRNQVTIAALITAVDRRVSKQGKPWAIVTLEDLEGSIQCL 1062

Query: 1031 FF 1032
            FF
Sbjct: 1063 FF 1064


>gi|99034688|ref|ZP_01314628.1| hypothetical protein Wendoof_01000559 [Wolbachia endosymbiont of
            Drosophila willistoni TSC#14030-0811.24]
          Length = 718

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 296/607 (48%), Positives = 406/607 (66%), Gaps = 15/607 (2%)

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD VI YVQ KYG+  VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +P
Sbjct: 1    RDLVIDYVQKKYGY--VAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNP 58

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+L QAI  D   ++ R +D  + +LL+IS +LEG+YRH STHAAGIVI D+ L   VP+
Sbjct: 59   VTLSQAIEFDQNLQKERDSDEVIAKLLDISLRLEGIYRHVSTHAAGIVICDQKLENFVPV 118

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            Y D  S LP+TQ++MK++EKAGLIKFDFLGL TLTL+      + + G K+D+S +P +D
Sbjct: 119  YYDPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDGKKIDISSVPLND 178

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +TY +L++  ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  RK
Sbjct: 179  QKTYEILSSGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARK 238

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G EK   IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEM
Sbjct: 239  HGLEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEM 298

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +KQ+E FI GA+KNG+    A  IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+
Sbjct: 299  NKQRELFIQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPL 358

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF  A M L +D+ +K+  F   A+   + ++ P +N    +F + D RI Y +AA++ V
Sbjct: 359  EFFTALMNLNIDDRDKLNLFYHAAKFSGVTVLSPDINKSQAEFSIEDERIRYGIAALRNV 418

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G + A  I+   +    D  E F        +N+R LESL+ +GA D    +R QL +S+
Sbjct: 419  GFSIAEGIVNVRSSACKDIWE-FIQN-SGHIINKRALESLIKSGAFDSVHKNRKQLYESM 476

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D +  +A   +++R +    +F            +E F  E    + E+E   LGFY + 
Sbjct: 477  DTLIYFANKNKQDRESSQAALFGSLDVLKPKLENVEDFDEEE---KLEHELFSLGFYLTN 533

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HPL+ ++ +L K+ I G+      I  N     A V+   + +T +  R   +T S+P  
Sbjct: 534  HPLEKFRTLLEKLNI-GF------IGENRTAKTAGVILNARMRTSERGRFVILTLSDPHN 586

Query: 1026 EYEANFF 1032
              E  F+
Sbjct: 587  ISEIAFY 593


>gi|332177029|gb|AEE12719.1| DNA polymerase III, alpha subunit [Porphyromonas asaccharolytica DSM
            20707]
          Length = 1272

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 341/1060 (32%), Positives = 542/1060 (51%), Gaps = 104/1060 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------- 63
            +V L VHS YS+L+G   +  ++DK  A   P IA+TD   ++    F+  A        
Sbjct: 18   YVPLHVHSHYSILDGMAPVEKLVDKAVACGMPGIALTDHGAMYGIKNFTNYANDKINGDK 77

Query: 64   -----------------------------------AAGIQPIIGCQ-------LDIDMQD 81
                                                +  + I+GC+       L++  +D
Sbjct: 78   LAQIKSLRKQIKELEAEASNADEIARIEGEIKTIEQSLFKAIVGCEVYVARRSLELKDKD 137

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-SVRICLSWLQEIG 140
                 N  ++   +   ++LL    +GY+ LI++VS  +  + G+    RI    L E  
Sbjct: 138  AKDPDNPTRSIDRSGYHLILLAKNLQGYRNLIKMVSIAW--EHGEYYKPRIDKKLLSE-H 194

Query: 141  TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH------RGYDR 194
             EG+I  +    G I +         A K  L +K+ FG+  Y+ +  H       G + 
Sbjct: 195  HEGIIASSACLGGEIAQHILHGRLDEARKTALWYKETFGEDYYLEIMLHPNSDPLGGQET 254

Query: 195  YRES-----QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            Y +      +V+++     + ++ATN++ FL+EED EAHD L+ +  ++ +S  +R R T
Sbjct: 255  YHKQLQVAQEVIKMGQELGIKVIATNDTHFLNEEDAEAHDHLICMTTNSPISDPNRMRYT 314

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               +LK+  EM ++F+D P+ LENT+EI  +  +    HAP++P F   E  +    E++
Sbjct: 315  KQEWLKSPEEMTALFADYPDVLENTLEICNKVEYYSIDHAPLMPHF---ELPEGFASEDD 371

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR+    G + R             + ++R+D EL VI  M F GYFL+V DFI  A++
Sbjct: 372  YLRHLTYEGAKKRYGDPV------PPEVQERIDMELGVIQNMGFPGYFLVVQDFIAAARQ 425

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              + VGPGRGS AGS  AY L+IT I+P+++ LLFERFLNPDR+SMPD DIDF    R  
Sbjct: 426  LGVRVGPGRGSAAGSAVAYCLSITQIEPIKYGLLFERFLNPDRISMPDIDIDFDDKNRWR 485

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V+ +V NKYG + V+ IIT  ++  K A++ V R  ++P  Q +RLCKLIP+     V  
Sbjct: 486  VLEWVTNKYGRDHVSNIITLTTMATKGAIKGVARVEELPLDQANRLCKLIPDRAPEGVKH 545

Query: 490  ----QAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                  + ++  FREA ++ +  +   +  +++LEG       HA G++I   P+S +VP
Sbjct: 546  LTLDWMVQNNQEFREASVSQNEQLANTIRYARQLEGTASTTGVHACGVIISGPPVSDVVP 605

Query: 545  MYRDVRSDLP----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599
            +   +  D      V Q+  K IE  GLIK DFLGL+TL+++  +L  +    G+ +D+ 
Sbjct: 606  LSTAIDPDTNERKLVAQYEGKVIEPTGLIKMDFLGLQTLSIINDALQNIKMSYGIDLDID 665

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +T+ L +   T+G FQ ES GMR+ L+ ++P   +D++A+ +LYRPGP+DNI 
Sbjct: 666  TIPVDDPKTFELYSRGDTVGTFQFESPGMRKYLQQLEPTEFKDLVAMNALYRPGPMDNIP 725

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RK G+++I    P ++P LK+T G+ +YQEQVM ++++L  ++  ++D LR+AMGK
Sbjct: 726  TFIERKLGRQEITYDLPEMEPYLKDTYGITVYQEQVMILSRVLGDFTRGDSDSLRKAMGK 785

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K ++EM K + +F+      G  +     I++   KFA Y FNKSH+  YA ++YQTA++
Sbjct: 786  KKEKEMAKYRIKFVENGVAKGHPRDTLERIYDGWQKFASYAFNKSHSVCYAWVAYQTAYL 845

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP +F+AA +T      +K+ K+ ++ +   +++  P VN     F    +  I + 
Sbjct: 846  KAHYPAQFMAALLTCNQSKSDKLTKYLEEVQHMGLEVKGPDVNESFTAFSANKEGVIRFG 905

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L  I  VG + A  I+ E      +  + DF  R D    +RR LE+L+ +GA D FG  
Sbjct: 906  LGGISHVGLSVAEAIIQEREEHGAYQDVYDFFQRTDLSNCSRRALEALILSGAFDNFGIE 965

Query: 898  RMQLLQS-----------------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
            R                       L  + +Y + +E  RT    ++F     +      L
Sbjct: 966  REVYFAPIAKSGVSSLSYGKDETFLTALMQYGKILESERTQVQASLFGDSDPSVKLPKPL 1025

Query: 941  EKFSVENSS--VRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                VE  S   R   EQ  +G Y S HPLD Y  I+  +
Sbjct: 1026 PPKDVEPWSHLERLTKEQTYIGMYLSAHPLDPYAFIIEYL 1065


>gi|256370678|ref|YP_003108503.1| putative bifunctional DNA polymerase III subunit alpha/DNA polymerase
            III subunit epsilon [Candidatus Sulcia muelleri SMDSEM]
 gi|256009470|gb|ACU52830.1| putative bifunctional DNA polymerase III, alpha subunit (DnaE)/DNA
            polymerase III, epsilon subunit (DnaQ) [Candidatus Sulcia
            muelleri SMDSEM]
          Length = 1406

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 338/1016 (33%), Positives = 552/1016 (54%), Gaps = 67/1016 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            L K   F H+  H+ +S+L   + +N+++ K    +  A+ ITD  N+        K   
Sbjct: 222  LFKKKYFSHIHNHTYFSILSSTIDINSLIKKTIEYEMDAVGITDYGNMMGVFNLINKIKT 281

Query: 65   AG------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
                    I+PIIGC+L I   DN  +    K     +   VL+     GY  L +L S+
Sbjct: 282  INESEKKKIKPIIGCELFI--SDNYLIKKFTKKNPDKIYHQVLVAKNKNGYDNLSKLCSK 339

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             ++        RI  + L E   E LI ++G  +  I         + AEK    +  LF
Sbjct: 340  GFIDGYYSGIPRIGKN-LVEKYKENLIAISGDLNSEIPLTLLNKGEKEAEKVFKWWHNLF 398

Query: 179  GDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH- 236
             D  Y+ + RH   +    +++ ++ A  +++  +A NN+ +L ++D  AHD+L+ V + 
Sbjct: 399  KDDFYIEILRHGLEEEDHVNKILIKFAKKYKVKFIAQNNNFYLEKKDANAHDILLCVKNC 458

Query: 237  ---STVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
               S  + +    R      + Y K + +M ++FSD+PEA +N  E+  +   + ++  P
Sbjct: 459  QKQSIPIGKGKGFRFGFPNKEFYFKKKLQMYNLFSDIPEAFDNLKELIEKVE-VYEISNP 517

Query: 291  IL-PRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLD 342
            IL P+F       +K+C       ENE        L+    +GA  K  H  +  +++++
Sbjct: 518  ILLPKFEIPKKWRKKDCKSNDIHYENEY-------LKYLTYKGAKKKFDHLNEQIKKKIE 570

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            FEL  I ++ + GYFLIV D I  AKK  + VGPGRGS AGSV AY + IT IDP++++L
Sbjct: 571  FELETIKKIGYPGYFLIVQDLILQAKKIGVEVGPGRGSVAGSVVAYCIGITKIDPIKYNL 630

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNPDR+S+PD DIDF    R+++I++V NKYG + VAQIIT+G + AK+++RD  
Sbjct: 631  LFERFLNPDRVSLPDIDIDFDDKGREKIIQWVVNKYGKDNVAQIITYGKMGAKSSIRDTA 690

Query: 463  RALQMPYSQVDRLCKLIP-NDPAHPVSLQAIADDSR----------------FREARLAD 505
            R L +   + D++ K++P N     +  + I D  +                F+E     
Sbjct: 691  RVLNLSLEETDKMAKMVPTNFSLKEIITKDIKDLKKILKFEELKNVITLKKIFKEKNTLQ 750

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
                + L+ +  +EG  R+   HA GI+I    + + +P+ +   S+L +TQF+ + +EK
Sbjct: 751  A---KTLKQAMGIEGSVRNTGIHACGIIITPSDIKKYIPVAKTKDSNLLLTQFDNEVVEK 807

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
             GL+K D LGLKTLT+++++L  +  R +K  L  IP DD +TY L     T+ +FQ ES
Sbjct: 808  MGLLKMDLLGLKTLTIMKETLFLIKNRNIK--LENIPLDDEKTYELFKNGETVAVFQYES 865

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
             GM++ L+ ++PD  +D+IA+ +LYRPGP+  I  +  RK+G+EKI    P +   LKET
Sbjct: 866  HGMQKYLKQLKPDKFDDLIAMNALYRPGPMQYIPNFIARKHGQEKISYDLPELKEFLKET 925

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+ +YQEQVM I+Q +SG+S  +AD+LR+A+GKK K  +   K++FI G  KNG S  I
Sbjct: 926  YGITVYQEQVMLISQKISGFSKGDADLLRKAIGKKEKNLLSNMKKQFIDGGKKNGFSSQI 985

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               I++    FA Y FNKSH+  Y+ I+++TA++KTHYP E++A+ ++  M N++ I  F
Sbjct: 986  LEKIWKDWKSFASYAFNKSHSTCYSYIAFKTAYLKTHYPAEYMASVLSNNMKNIKDISFF 1045

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNR---IYYSLAAIKGVGTTTARHIMEASADKPF 862
             ++ ++  + ++ P +N    D+K   N+   I + + AIKG+G  + + I++    K +
Sbjct: 1046 IEECKRIGVIVLGPDINES--DYKFTVNKLGFIRFGIGAIKGIGEYSVKSILKERK-KKY 1102

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL------QSLDNIQKYAQWVE 916
            +S+     +VD + +N++VLE+LV +GA D F   R Q          ++ I K+    +
Sbjct: 1103 NSILGLIKKVDLRLVNKKVLENLVVSGAFDNFKIQRSQYFYEENGSNMIEKIIKFGVKYK 1162

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
            K + N   ++F + K     K   +     N   + + E+ V+G Y + HPL+ YK
Sbjct: 1163 KIKENIKNSLFKNIKDIEILKPNFKSCKNWNLFEKLKKEKEVIGMYLTYHPLNEYK 1218


>gi|260592651|ref|ZP_05858109.1| DNA polymerase III, alpha subunit [Prevotella veroralis F0319]
 gi|260535421|gb|EEX18038.1| DNA polymerase III, alpha subunit [Prevotella veroralis F0319]
          Length = 1239

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 366/1106 (33%), Positives = 564/1106 (50%), Gaps = 101/1106 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----------Q 60
            ++HL VH++YS+L+G   +  ++DK  AD    +AITD   +F   EFS          +
Sbjct: 4    YIHLHVHTNYSILDGQSKVTRLVDKAIADGMKGMAITDHGVMFGIKEFSDYCAKVNKERK 63

Query: 61   KACAAGIQPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            K      +PI GC++ +    M D  K  +       +   +++L     GY+ LI+LVS
Sbjct: 64   KNGEEPFKPIFGCEMYVARRTMHDKDKSMHDN-----SGYHLIVLAKNYNGYKNLIKLVS 118

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              ++ D      R   + L++   E LI+ +   +G I           A +    + ++
Sbjct: 119  HAWV-DGYYYRPRTDRAELEKY-HEDLIVCSACIAGEIPSKIIHGDIDGAREACEWYHRV 176

Query: 178  FGDRLYVNLQRHRGYD----RYRES---------QVVQLAYTHELPLVATNNSLFLSEED 224
            FGD  Y+ LQRH   D      RE+          ++Q A  + + +V TN+  F  +E 
Sbjct: 177  FGDDFYLELQRHEVKDPTILANREAFPLQQKANKVLLQFAKEYGIKVVCTNDCHFEDKET 236

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
             EAHD L+ +A +  +    R R +   + K+R EM  +FSD+PEAL NT+E+  +    
Sbjct: 237  AEAHDHLLCLATNEDLDDPKRMRYSKQEWFKSRQEMNDVFSDIPEALTNTLEVLDKVEIY 296

Query: 285  LQVHAPILPRF-------IEKECD------DIQKE-------------EENELRNKAVAG 318
               H PI+P F        E+E +      D+ KE             EE +   + + G
Sbjct: 297  SIDHGPIMPFFPIPESFGTEEEWEKKFTEEDLYKEFTTDENGENPLSPEEGQKVIERLGG 356

Query: 319  LE------------VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E             +LA     K Y    + + +  + FEL+V+  M F GYFLIV DF
Sbjct: 357  YEKIYRIKFEADYLAKLAYDGAKKLYGDPLSDEVKSHIRFELHVMKTMGFPGYFLIVQDF 416

Query: 364  IQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            I  A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF
Sbjct: 417  INAARQELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDTDF 476

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D R  V+++V +KYGHE  A IIT+G++  K +++DV R  ++P +  + LCK IP+ 
Sbjct: 477  DDDGRGRVLQWVMDKYGHENCAHIITYGTMATKNSIKDVARVEKLPIAIANELCKAIPDR 536

Query: 483  PAHPVSLQ---AIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRP 538
                + +    AI    + ++A +++   +R  ++ ++ LEG  R+   HA G +I   P
Sbjct: 537  LPDGMKMNLANAIKCTPQLQDAEVSEDIRERNTIKYARMLEGTVRNTGIHACGFIICRNP 596

Query: 539  LSQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR- 592
            +   VP+      D     +PVTQ++   IE  GLIK DFLGLKTL+ L+++   + Q  
Sbjct: 597  IDDWVPVSTATDPDFPEKKVPVTQYDGHVIEATGLIKMDFLGLKTLSELKEACKVIRQTT 656

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G  +DL  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +LYRP
Sbjct: 657  GDIIDLDNIPIDDELTYQLYQKGQTIGTFQFESAGMQKYLRELHPTVFEDLIAMNALYRP 716

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP+D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+D 
Sbjct: 717  GPMDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLASFTRGESDA 776

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LR+AMGKK K  +D+ K +FI     NG    I   I+    KFA Y FNKSHA  Y+ +
Sbjct: 777  LRKAMGKKKKAIVDQMKPKFIKQGQANGHDPQILEKIWSDWEKFASYAFNKSHATCYSWV 836

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG- 831
            +YQTA++K HYP E++AA MT     + +I K  ++ +   I  + P +N   + F V  
Sbjct: 837  AYQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKALKIATLGPDINESQIGFGVNK 896

Query: 832  DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I + LAAIKG+GT+ A  I+ E   + P+  + DF  RVD   +NR+  ESL ++G 
Sbjct: 897  KGEIRFGLAAIKGMGTSAAESIVSEREKNGPYKDIYDFAERVDLSNVNRKAFESLAYSGG 956

Query: 891  LDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
             D FG  R Q           LD I +Y Q  +  +  +  ++F              K 
Sbjct: 957  FDSFGLQREQFFGVSGRDSVFLDIIVRYGQLFQTEKAEQQNSLFGGMDAVAVMHPVAPKT 1016

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-----GIKGYEESVATI-RGNNIRL 997
                +  +   E+ ++G Y S HPLD Y  +L  M      + G    +  + + + +  
Sbjct: 1017 EKWPTIEKLNKERELVGVYLSAHPLDEYSVVLNNMCNTHCSMIGRNADMTKLSQTDEVTF 1076

Query: 998  AAMVVSKQQKKTRK-GSRIGWVTFSE 1022
              +V S  ++ ++K G   G+VT  +
Sbjct: 1077 GGIVTSVNERFSQKTGKPFGFVTIED 1102


>gi|156740220|ref|YP_001430349.1| DNA polymerase III subunit alpha [Roseiflexus castenholzii DSM
           13941]
 gi|156231548|gb|ABU56331.1| DNA polymerase III, alpha subunit [Roseiflexus castenholzii DSM
           13941]
          Length = 1272

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 341/984 (34%), Positives = 537/984 (54%), Gaps = 42/984 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL VHS YSLL+G  +   I  +       +IA+TD   ++ A+EF   A  AGI+PI
Sbjct: 4   FVHLHVHSEYSLLDGYAATGAIAARAVELGMDSIALTDHGVMYGAMEFYTNAKKAGIKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK---Q 127
           IG +  +      + T++G   +     ++LL     GY+ L+ L +R +L   GK    
Sbjct: 64  IGLEAYMAPGSRREATSRGAKHYY---HLLLLAKDEIGYRNLVRLTTRAHLDGMGKGVFA 120

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
             RI  + L++   EGLI+ +   +G + +       + A +    ++ L G D  ++ L
Sbjct: 121 RPRIDRALLEQ-HHEGLIVTSACIAGEVIQRLKEEQKEQAREIAAYYRDLLGPDNYFLEL 179

Query: 187 QRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           Q H           ++V++     +PLV TN++ F+  ED +AH +++A+ ++  + +  
Sbjct: 180 QLHDNTPELEAINDELVRIGKELGIPLVVTNDTHFVRPEDVDAHKMILALGYNMTLKELC 239

Query: 245 RPRVTPD--HYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKECD 301
             +   D  +++ +  EM   F       LENT  IA RC+  L+     LP     E  
Sbjct: 240 AKQYEMDATYHIMSGEEMWRRFKKYGTTPLENTRRIAERCNLNLEFGRVQLPTIDIPEGH 299

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
           D      + LR     GL  R        G   + Y +RL++EL+VI +  F  Y LIV 
Sbjct: 300 DAS----SYLRFVCEEGLMRRF------NGNPPEAYMKRLEYELDVINQTGFPDYMLIVW 349

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D++++A+   IP  P RGS   S+  Y L ITD+DP++  LLFERFL+P+R+ MPD DID
Sbjct: 350 DYVKFARARGIPCLP-RGSAGASLILYCLGITDVDPVKNKLLFERFLSPERLEMPDIDID 408

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           F   RR EV+ Y+  +YG E  AQIIT+G+L AKAA+RD+GR L +P S+VDR+ +LIP 
Sbjct: 409 FADSRRHEVLEYIAERYGRENTAQIITYGTLGAKAAIRDIGRVLDIPLSEVDRVARLIPA 468

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P      QA+      ++    +P +  L++ +QK+EG  +   THA G+V+   PL +
Sbjct: 469 LPVGTTIAQALERVPELKQIYETNPELANLIDWAQKVEGRMKSVGTHACGVVVSRTPLEE 528

Query: 542 LVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599
           +VP+ R  + +  +   F    ++K GL+K D LGL  L+++ ++L ++AQ  G  ++L+
Sbjct: 529 IVPLQRTTKDENALMAAFEGPTLQKMGLLKMDVLGLTNLSVVAEALQYIAQTTGKTMELA 588

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP DD + +  L    T  +FQLES GM + L  ++P  +ED+ A+V+LYRPGP++ I 
Sbjct: 589 DIPLDDPKVFEALGRGETTNVFQLESPGMTRYLMQLKPTRVEDLYAMVALYRPGPLEQIP 648

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
           VY + KN  + I  +HP++ P+L++T GVI+YQEQ+M++ Q ++ Y+L +A ++ +A+ K
Sbjct: 649 VYIHNKNHPQDITYLHPILKPILEDTYGVIVYQEQIMRLLQEVADYTLGQAYIVIKAISK 708

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K K+ M + + +F  G  + G+++  A  ++EL+  FA Y FN+ H+  Y ++SYQTAW+
Sbjct: 709 KDKKLMAENEVKFKQGCLRKGLTQEQADQLWELILPFAGYSFNRPHSTLYGLLSYQTAWL 768

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----- 834
           K +YPVE++AA +       + I K   + RQ  + ++ P++N    DF + + R     
Sbjct: 769 KVNYPVEYMAAVLKGAGGATDDIAKAVNECRQRGVPVLGPNINDSAFDFTIREFRDPSDG 828

Query: 835 -----IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                I + LAAIK VG      I+ E  A  PF SLED C RVD   LN+RVLESL+  
Sbjct: 829 NLKRGILFGLAAIKNVGAGPIEAILRERDAGGPFRSLEDVCERVDRHALNKRVLESLIKC 888

Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV--E 946
           GALD    +R Q L+ LD   +     +KNR     ++F       ++ I      V  E
Sbjct: 889 GALDALPGNRWQKLEILDAAMEAGARAQKNRETGQIDMFGGLVSQAAEVIAALPLPVIEE 948

Query: 947 NSSVRFEN---EQRVLGFYFSGHP 967
            +  R E    E+ +LG  FS  P
Sbjct: 949 TAERRKEKLAWEKELLGVVFSSDP 972


>gi|229490423|ref|ZP_04384264.1| DNA polymerase III, alpha subunit family [Rhodococcus erythropolis
            SK121]
 gi|229322713|gb|EEN88493.1| DNA polymerase III, alpha subunit family [Rhodococcus erythropolis
            SK121]
          Length = 1178

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 365/1077 (33%), Positives = 576/1077 (53%), Gaps = 77/1077 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  +  + ++ A  +  A+ +TD  N++ A +F  +A +AGI+P
Sbjct: 4    SFVHLHNHTEYSMLDGAAKVGAMFEEAARLEMTAVGMTDHGNMYGASQFYNEAKSAGIKP 63

Query: 70   IIGCQLDIDMQD--NLKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  I  +   N K    G         +       + ++   A G + L +L S  
Sbjct: 64   IIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSSLA 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +  Q  +  R+    L     EG+I  TG  SG I         + A +    +++++G
Sbjct: 124  SIEGQLGKWPRMDEE-LIAAHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEIWG 182

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +R     ++ +     +P +ATN+  +++++  E H+ L+ +   
Sbjct: 183  PDNFFLELMDHGLSIERRVREGLLDIGKQLGIPPLATNDCHYVTKDAAENHEALLCIQTG 242

Query: 238  TVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHA--PILP 293
              +S   R +   D +YLK+ +EM +I+ +++P A +NTV I  R      V A    +P
Sbjct: 243  KTLSDPTRFKFDGDGYYLKSAAEMRAIWDNEVPGACDNTVAIGERVQSYEDVWAFHDRMP 302

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             F   E       ++  LR + + GL+ R   G        Q+Y  R D+E+ VI  M F
Sbjct: 303  IFPVPE----GHTQQTFLRAEVMRGLDRRFPSGP------PQEYLARADYEIGVINEMGF 352

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL+V D I  AK   I VGPGRGS AGS+ AYA+ IT+IDP+ + LLFERFLNP+R+
Sbjct: 353  PAYFLVVGDLINHAKDVGIRVGPGRGSAAGSLVAYAMGITNIDPIPYGLLFERFLNPERV 412

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA-LQMP-YSQ 471
            SMPD DIDF   RR E++RY  +K+G+++VAQ+ITFG+++ KAA++D  R     P ++ 
Sbjct: 413  SMPDIDIDFDDRRRGEMVRYATDKWGNDKVAQVITFGTIKTKAAIKDSARVQFGKPGFAI 472

Query: 472  VDRLCKLIPND-PAHPVSLQAIAD--DSRFREA----RLAD--PSVDRLLEISQKLEGLY 522
             D++ K +P    A  +S+  I D    R++EA     L D  P V ++ + +  LEGL 
Sbjct: 473  ADQITKALPPPIMAKDISVSGITDPKHERYKEAVEVRALIDSSPDVAKIYKTAVGLEGLI 532

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R+A  HA  +++   PL+  +P+++  +    +T ++    E  GL+K DFLGL+ LT++
Sbjct: 533  RNAGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVI 592

Query: 583  QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              +L+ + A RG+ +DL  +P DD  TY LL    TLG+FQL+  GMR+ L+ MQP    
Sbjct: 593  GDTLENIKANRGIDLDLDTLPMDDAATYELLARGDTLGVFQLDGGGMRELLKLMQPTGFG 652

Query: 642  DIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQV 695
            DI+A ++LYRPGP  +D  + Y  RKN  E +  IHP L +P+   L ET G+IIYQEQ+
Sbjct: 653  DIVAALALYRPGPMGVDAHISYAKRKNALEDVKPIHPELEEPLAEILSETYGLIIYQEQI 712

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQ+AQ ++GY+L +AD+LRRAMGKK   E++K    F  G   N  S+     +++ +  
Sbjct: 713  MQLAQKVAGYTLGQADLLRRAMGKKKLSELEKAYAGFRQGMLDNNFSEAAIKALWDTVLP 772

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSH+A Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  I 
Sbjct: 773  FAGYAFNKSHSAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKSAIYLADCRKLGIT 832

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDS 874
            ++PP VN   VDF    + I + + +++ VG      I++A  +K  F    D+  ++D+
Sbjct: 833  VLPPDVNESRVDFATVGDDIRFGMGSVRNVGANVVASIIKARTEKSKFTDFSDYLGKIDA 892

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENI--FA 928
               N++V ESL+ AGA D  G+ R  L+     ++D++           T K E I  F 
Sbjct: 893  MACNKKVTESLIKAGAFDSLGHPRKGLMLVHADAIDSVMS---------TKKAEAIGQFD 943

Query: 929  HEKGTFSDKITLEKFSVE------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
               G  +D+     F V+      +S  R   E+ +LG Y SGHPL+  + ILR+     
Sbjct: 944  LFGGAEADESITSVFDVKIPDEEWDSKHRLALEREMLGLYVSGHPLNGVEHILRQQS--- 1000

Query: 983  YEESVATI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + S+A I       G  + L  ++ S  ++  + G     V   +     E  FFP
Sbjct: 1001 -DTSIAAILEGGVQDGAQVTLGGIIASVDRRVNKNGLTWCIVQLEDLVGGIEVLFFP 1056


>gi|183602396|ref|ZP_02963762.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis HN019]
 gi|219683289|ref|YP_002469672.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis AD011]
 gi|241191250|ref|YP_002968644.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis Bl-04]
 gi|241196656|ref|YP_002970211.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis DSM 10140]
 gi|183218315|gb|EDT88960.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis HN019]
 gi|219620939|gb|ACL29096.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
            lactis AD011]
 gi|240249642|gb|ACS46582.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis Bl-04]
 gi|240251210|gb|ACS48149.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis DSM 10140]
 gi|289177365|gb|ADC84611.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
            lactis BB-12]
 gi|295794243|gb|ADG33778.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis V9]
          Length = 1188

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 353/1067 (33%), Positives = 559/1067 (52%), Gaps = 62/1067 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  FV L  H+ YSLL+GA  + +++         A+ ITD  N+  A E   +A  
Sbjct: 1    MTNSADFVQLHNHTHYSLLDGASKIPDLVKYTKELGMGAVGITDHGNMHGAYEMYTEAVK 60

Query: 65   AGIQPIIGCQL----DIDMQDNLKM-------TNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
              ++PIIG +     +   QD  ++            +    +  + L     EG + LI
Sbjct: 61   QDVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTLWAEDDEGLRNLI 120

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
               S   L  +  +  R+    L    ++G+I  +G  SG +           A +    
Sbjct: 121  RASSVANLEGRVMRYPRMDKEVLSTY-SKGVICGSGCPSGIVQTRLRLGQFDEALRAAGE 179

Query: 174  FKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             + ++G D  ++ L  H    +R     ++++A     PL+ATN+S ++ EED  A D +
Sbjct: 180  LQDIYGKDNFFIELMDHNLEIERKVTKDLLEIAKKLGAPLLATNDSHYVHEEDAGAQDAM 239

Query: 232  MAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH-- 288
            + +   + +   DR +   + +Y+++  +M  +F DLPEA +NT+E+A RC+ +   H  
Sbjct: 240  LCINSGSHLDDPDRFKFDGEGYYMRSAQQMRELFRDLPEACDNTIEVAERCNVMFDDHED 299

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +P+F   E  D    E +    K   GLE R  +G +     AQ      D+E  VI
Sbjct: 300  GAFMPKFPCPEGWD----ETSLFLKKVEEGLERRY-EGNVPAHVLAQ-----ADYECGVI 349

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M+F GYFL+VAD+IQWAK + I VGPGRGS AGS+ AYA+ IT++DPL   L+FERFL
Sbjct: 350  CQMQFPGYFLVVADYIQWAKDHGIMVGPGRGSAAGSMVAYAMGITELDPLEHGLIFERFL 409

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+S+PD D+DF  + R +VI Y  +KYGH++VAQ + +G+++ K AL+D  R +   
Sbjct: 410  NPERVSLPDIDVDFDPEGRLKVIEYCGDKYGHDKVAQCVIYGTIKTKQALKDSARIMGYE 469

Query: 469  YSQVDRLCKLIP-------NDPAHPV---SLQAIADDSRFREARLADPSVDRLLEISQKL 518
            +S  + + K +P       + P H +     +  A+   +RE   ++P   R+ + +  +
Sbjct: 470  FSMGELVTKALPPAATGGKDVPLHDIFDPGAKRYAEAREYRELYESNPDAKRITDEAMGI 529

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLK 577
            EGL R    HA   ++G  P++   P+    R+D  V T F     E  GL+K DFLGL 
Sbjct: 530  EGLIRQTGVHACATIMGSEPITDTSPLLE--RTDGTVTTTFEYHTCETLGLVKMDFLGLS 587

Query: 578  TLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT++  +L  +   G + +D + IP DD ETY LL+   TLG+FQL+S GMR  L+ ++
Sbjct: 588  NLTVIGDTLRNIEANGKEPIDHTKIPLDDKETYELLSRGDTLGVFQLDSDGMRALLKQLK 647

Query: 637  PDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVII 690
            PD   DI AL++LYRPGP  +D+   Y  RKNG +KI  IHP L +P+   L ET G+II
Sbjct: 648  PDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKIEPIHPELAEPLKEVLDETYGLII 707

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQV   A++L+GYSL +ADVLRRAMGKK  E + K++  F  G  ++G S+  A  ++
Sbjct: 708  YQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKEHGYSREAAQAVW 767

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            ++L  F+ Y FNK+H+AAY +ISY TA++KTHYP EF+AA +     N +K   +  +AR
Sbjct: 768  DVLVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPAEFMAALLQGASTNKDKTALYLGEAR 827

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM--EASADKPFDSLEDF 868
            +  I+++ P VN     +    + + + L AI+ VG      I+     +   + +  DF
Sbjct: 828  RMGIKVLSPDVNESVYAYSAVGDVVRFGLGAIRNVGEKAVADIIAERQGSHGRYVNFMDF 887

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              RV    LNRR++ESL+ AGA D    +R  L Q  +        +++ +     ++FA
Sbjct: 888  IRRVPLTALNRRLVESLIKAGAFDSIDPNRRALYQIHEAAIDSVTDLKRKQATGQFDLFA 947

Query: 929  HEKGTFSD---------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LR 976
                   D          I++      +   +   E+ +LG Y S HPL   + +   LR
Sbjct: 948  DLDAGADDGEAEALGDVSISVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVLASLR 1007

Query: 977  KMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             M I    +   T+   + + +A ++ +   + ++KG+R   VT  +
Sbjct: 1008 DMSIAQLIDRAPTMPERSQVMVAGLITNVDSRVSKKGNRWAIVTIED 1054


>gi|261879187|ref|ZP_06005614.1| DNA-directed DNA polymerase III alpha subunit [Prevotella bergensis
            DSM 17361]
 gi|270334182|gb|EFA44968.1| DNA-directed DNA polymerase III alpha subunit [Prevotella bergensis
            DSM 17361]
          Length = 1239

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 369/1104 (33%), Positives = 572/1104 (51%), Gaps = 97/1104 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-------SQKAC 63
            FVHL VH+ YS+L+G   +  ++DK  +D    +AITD   ++   E        ++K  
Sbjct: 4    FVHLHVHTHYSVLDGQSKVRKLVDKAISDGMKGMAITDHGVMYGIKELFDYCATINKKRA 63

Query: 64   AAGI---QPIIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            + G+   +PI+GC++ +   +   K+   G     +   +++L    +GY+ LI+LVSR 
Sbjct: 64   SEGLDPFKPILGCEMYVAHHNKEDKVREDGDA---SGYHLIVLAKNYKGYKNLIKLVSRA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++     +  R   + L++   EGLI+ +   +G +         + A +    + +LFG
Sbjct: 121  WVHGYYYKP-RTDRTDLEKY-HEGLIICSACIAGEVPSKILKGDIEGAREACEWYHRLFG 178

Query: 180  DRLYVNLQRHRGYD------------RYRESQVV-QLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D            + + +QV+ + A  + + +V TN+  F  ++  E
Sbjct: 179  DDFYLELQRHEVKDPSIRANREVFPLQQKANQVMMEFAKEYGIKVVCTNDCHFEDQDTAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++ S  +    R   T   + K+R EM  IFSD+PEAL NTVEI  +      
Sbjct: 239  AHDHLLCLSTSKDLDDPFRLMYTKQEWFKSREEMNEIFSDIPEALRNTVEILDKVELYSI 298

Query: 287  VHAPILPRF-IEKEC--------------------------DDIQKEEENEL-------- 311
              +PI+P F I KE                           + + +EE +++        
Sbjct: 299  NSSPIMPYFPIPKEFGTEEELRKKYTEEDLFREFTTDENGQNPLPEEEAHKVIDRLGGYD 358

Query: 312  ---RNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R K  A    +LA     K Y      + R+ ++FEL+V+  M F GYFLIV DFI 
Sbjct: 359  KIYRIKLEADYLGKLAFDGAKKNYGDPVPDNVREHINFELHVMKTMGFPGYFLIVQDFIA 418

Query: 366  WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             A+    + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF  
Sbjct: 419  AARNELGVWVGPGRGSAAGSVVAYCLGITRIDPLKYDLLFERFLNPDRVNLPDIDTDFDD 478

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN--- 481
            D R +V+R+V +KYG E  A IIT+ S+  K ++ DV R  ++P  + + L K IP+   
Sbjct: 479  DGRGKVLRWVMDKYGEENCAHIITYSSMATKNSIADVARVERLPLERANMLKKAIPDRLP 538

Query: 482  DPAHPVSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            D        AI      REA  + DP     ++ +++LEG  R    HA G +I   P+ 
Sbjct: 539  DGKKMNLRNAIEYTPELREAEASTDPRERNTIKYAKQLEGTVRGTGIHACGFIICRDPID 598

Query: 541  QLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
            + VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   + + RGV
Sbjct: 599  EWVPVSTADDPDFPELKCAVTQYDGHVIEDTGLIKMDFLGLKTLSELKEACKVVERTRGV 658

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            KVD+  IP DD  TY L     T+G FQ ES GM++ L  + P   ED+IA+ +LYRPGP
Sbjct: 659  KVDIDKIPIDDELTYKLYQQGRTIGTFQFESPGMQKYLRELHPTVFEDLIAMNALYRPGP 718

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+D LR
Sbjct: 719  MDYIPDFIKRKNDPSLVTYDIPCMEQYLKDTYGITVYQEQVMLLSRQLANFTRGESDALR 778

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +AMGKK K  +D+ K +F+     NG  K +   I+    KFA Y FNKSHA  Y+ ++Y
Sbjct: 779  KAMGKKKKAIVDQMKPKFLKQGMANGHDKNVLEKIWNDWEKFASYAFNKSHATCYSWVAY 838

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833
            QTA++K HYP E++AA MT    ++ +I K  ++ +  +I  + P VN   V+F V    
Sbjct: 839  QTAYLKAHYPAEYMAALMTRRFADIGEITKLMEECKAMDIPTLGPDVNESYVEFGVNKKG 898

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + L+AIKG+G+  A  I+ E   + P+  + DF  RV  + +NR+ +ESL  +G  D
Sbjct: 899  EIRFGLSAIKGMGSGAADAIVKERQKNGPYKDIYDFVGRVSLRDINRKAMESLALSGGFD 958

Query: 893  CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            CFG  R Q +Q        LD++ ++ Q  ++++     ++F       +        + 
Sbjct: 959  CFGLMREQYMQVNAKGDVFLDSLVRFGQQYQQDKMESANSLFGGMVSEIAIATPPAPKAE 1018

Query: 946  ENSSV-RFENEQRVLGFYFSGHPLDVYKPILRKM-----GIKGYEESVATIR-GNNIRLA 998
            E S++ +   E+ ++G Y S HPLD Y  +L  +        G  E+ A +     +   
Sbjct: 1019 EWSAIEKLGKEKELVGIYLSAHPLDDYILVLDNLCNTSCTEAGNRENYAELSMRQEVTFG 1078

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSE 1022
             +V    Q+  ++G   G VT  +
Sbjct: 1079 GIVTKVTQRFNKRGEPFGIVTIED 1102


>gi|288940218|ref|YP_003442458.1| DNA polymerase III subunit alpha [Allochromatium vinosum DSM 180]
 gi|288895590|gb|ADC61426.1| DNA polymerase III, alpha subunit [Allochromatium vinosum DSM 180]
          Length = 2069

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 304/718 (42%), Positives = 437/718 (60%), Gaps = 21/718 (2%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P+FVHL +HS YSL++G + +  ++  +AA   PA+A+TD  NLFS + F + A  AG++
Sbjct: 3   PTFVHLHLHSEYSLVDGLVRIKPLVKTVAAAGMPAVAVTDQGNLFSLVRFYKAAVGAGVK 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PI G  L +   ++    ++          +VLL     GY+ L  L+SR ++  Q    
Sbjct: 63  PIAGADLWVRNPEDANHPHR----------LVLLAQDEPGYRNLTRLISRGFVEGQHLGV 112

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            ++   W+ E   +GLI L+GG  G +  A       +AE+RL  +  +F DR Y+ L R
Sbjct: 113 AQVERDWILE-AHQGLIALSGGPRGDVAEALLKGRDAIAEQRLDAWLSVFEDRYYLELMR 171

Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  +       V LA    +P+VATN+  FL+  D+EAH+  + +     +    RPR
Sbjct: 172 TGRALEGELIESSVDLAIRRGVPVVATNDVRFLAAGDFEAHEARVCIHQGRTLDDPRRPR 231

Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + + YL+  +EM  +F+DLPEALENTVEIA+RC+  L++    LP F   E       
Sbjct: 232 DYSEEQYLRTPAEMAELFADLPEALENTVEIAKRCNLELKLGKNYLPVFPVPEGMTTDSF 291

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + R      LE  L + A       + Y +RL+ EL VI +M F GYFLIVADFIQW
Sbjct: 292 FAEQSRRGLEWRLERILDRDAPDYAERRRVYEERLETELAVIIQMGFPGYFLIVADFIQW 351

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           AK N IPVGPGRGSGAGS+ AYAL ITD+DP+   LLFERFLNP+R+SMPDFDIDFC + 
Sbjct: 352 AKDNGIPVGPGRGSGAGSLVAYALKITDLDPIEHELLFERFLNPERVSMPDFDIDFCMEG 411

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           RD VI YV  KYG E V+QIITFG++ AKA +RDVGR +  PY  VD++ K++P +    
Sbjct: 412 RDRVIDYVARKYGREAVSQIITFGTMAAKAVVRDVGRVMGHPYGFVDKIAKMVPFELGMT 471

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           +  +A+ +    + A   D  V  +L++++KLEGL R+A  HA G+VI    L+   P+Y
Sbjct: 472 LE-KALKESEDLKRAYDQDEEVRAILDMARKLEGLTRNAGKHAGGVVIAPTVLTDFAPLY 530

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK----VDLSLI 601
            +      VTQ++   +E+ GL+KFDFLGL+TLT++  +L  + A R  K    +D+  I
Sbjct: 531 CEPGGANLVTQYDKDDVEQVGLVKFDFLGLRTLTIIDWALKTINAGRAAKGEPPLDIERI 590

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
              D E + LL    T  +FQLES GM++ ++ +QPDC ++I ALV+L+RPGP+ + +V 
Sbjct: 591 DPRDQEAFDLLKRCETTAVFQLESRGMKELIKKLQPDCFDEITALVALFRPGPLQSGMVD 650

Query: 661 -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +  RK+G+ ++   HP ++P+LK T G+I+YQEQVMQIAQ+L+GYSL  AD+LRR +
Sbjct: 651 DFIERKHGRAEVAYPHPDLEPILKPTYGIILYQEQVMQIAQVLAGYSLGGADILRRCL 708



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 147/286 (51%), Gaps = 16/286 (5%)

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            + SH+AAYA++SYQT W+K HYP  F+AA ++ +MDN +K+     + R   +++ PP++
Sbjct: 1626 HNSHSAAYALVSYQTLWLKAHYPAAFMAAVLSADMDNTDKVVTLIDECRTMKLRVDPPAI 1685

Query: 822  NTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNR 879
            N     F + D++ + Y L A+KGVG +    ++EA  A   F  L DFC R+D +++NR
Sbjct: 1686 NRSDYHFTIADDKTVVYGLGAVKGVGESAIEAMLEARRAGGSFRDLWDFCGRIDLQRVNR 1745

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFS 935
            RVLESL+ AGALD  G +R  L+  L    K A+     R     ++F         T  
Sbjct: 1746 RVLESLIRAGALDELGPNRATLMAHLPLALKAAEQYHSTRAAGQVDLFGALEPSGPPTPD 1805

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
             ++  E  +      R + E+  LG Y +GHP+D Y+  L+ MG       + T R    
Sbjct: 1806 PQLARETLADWEDEQRLQGEKETLGLYLTGHPIDRYEDELKAMGGARIARLLETDRELGR 1865

Query: 996  R---------LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            R         +  +VV  +  KT++G R+G V   +     EA  F
Sbjct: 1866 RDRRDREKRTVVGLVVGVRHGKTQRG-RMGSVVLDDRTGRIEATVF 1910



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 30/47 (63%)

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            MGKK  EEM KQ++ F  GA   GI   ++ ++F L+  F+ YGFNK
Sbjct: 1141 MGKKKPEEMAKQRDTFEQGALARGIDGQLSSHVFNLIEYFSGYGFNK 1187


>gi|226307018|ref|YP_002766978.1| DNA polymerase III alpha subunit [Rhodococcus erythropolis PR4]
 gi|226186135|dbj|BAH34239.1| DNA polymerase III alpha subunit [Rhodococcus erythropolis PR4]
          Length = 1202

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 365/1077 (33%), Positives = 576/1077 (53%), Gaps = 77/1077 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  +  + ++ A  +  A+ +TD  N++ A +F  +A +AGI+P
Sbjct: 28   SFVHLHNHTEYSMLDGAAKVGAMFEEAARLEMTAVGMTDHGNMYGASQFYNEAKSAGIKP 87

Query: 70   IIGCQLDIDMQD--NLKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  I  +   N K    G         +       + ++   A G + L +L S  
Sbjct: 88   IIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSSLA 147

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +  Q  +  R+    L     EG+I  TG  SG I         + A +    +++++G
Sbjct: 148  SIEGQLGKWPRMDEE-LIAAHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEIWG 206

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +R     ++ +     +P +ATN+  +++++  E H+ L+ +   
Sbjct: 207  PDNFFLELMDHGLSIERRVREGLLDIGKQLGIPPLATNDCHYVTKDAAENHEALLCIQTG 266

Query: 238  TVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHA--PILP 293
              +S   R +   D +YLK+ +EM +I+ +++P A +NTV I  R      V A    +P
Sbjct: 267  KTLSDPTRFKFDGDGYYLKSAAEMRAIWDNEVPGACDNTVAIGERVQSYEDVWAFHDRMP 326

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             F   E       ++  LR + + GL+ R   G        Q+Y  R D+E+ VI  M F
Sbjct: 327  IFPVPE----GHTQQTFLRAEVMRGLDRRFPSGP------PQEYLARADYEIGVINEMGF 376

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL+V D I  AK   I VGPGRGS AGS+ AYA+ IT+IDP+ + LLFERFLNP+R+
Sbjct: 377  PAYFLVVGDLINHAKDVGIRVGPGRGSAAGSLVAYAMGITNIDPIPYGLLFERFLNPERV 436

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA-LQMP-YSQ 471
            SMPD DIDF   RR E++RY  +K+G+++VAQ+ITFG+++ KAA++D  R     P ++ 
Sbjct: 437  SMPDIDIDFDDRRRGEMVRYATDKWGNDKVAQVITFGTIKTKAAIKDSARVQFGKPGFAI 496

Query: 472  VDRLCKLIPND-PAHPVSLQAIAD--DSRFREA----RLAD--PSVDRLLEISQKLEGLY 522
             D++ K +P    A  +S+  I D    R++EA     L D  P V ++ + +  LEGL 
Sbjct: 497  ADQITKALPPPIMAKDISVSGITDPKHERYKEAVEVRALIDSSPDVAKIYKTAVGLEGLI 556

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R+A  HA  +++   PL+  +P+++  +    +T ++    E  GL+K DFLGL+ LT++
Sbjct: 557  RNAGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVI 616

Query: 583  QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              +L+ + A RG+ +DL  +P DD  TY LL    TLG+FQL+  GMR+ L+ MQP    
Sbjct: 617  GDTLENIKANRGIDLDLDTLPMDDAATYELLARGDTLGVFQLDGGGMRELLKLMQPTGFG 676

Query: 642  DIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQV 695
            DI+A ++LYRPGP  +D  + Y  RKN  E +  IHP L +P+   L ET G+IIYQEQ+
Sbjct: 677  DIVAALALYRPGPMGVDAHISYAKRKNALEDVKPIHPELEEPLAEILSETYGLIIYQEQI 736

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQ+AQ ++GY+L +AD+LRRAMGKK   E++K    F  G   N  S+     +++ +  
Sbjct: 737  MQLAQKVAGYTLGQADLLRRAMGKKKLSELEKAYAGFRQGMLDNNFSEAAIKALWDTVLP 796

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSH+A Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  I 
Sbjct: 797  FAGYAFNKSHSAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKSAIYLADCRKLGIT 856

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDS 874
            ++PP VN   VDF    + I + + +++ VG      I++A  +K  F    D+  ++D+
Sbjct: 857  VLPPDVNESRVDFATVGDDIRFGMGSVRNVGANVVASIIKARTEKSKFTDFSDYLGKIDA 916

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENI--FA 928
               N++V ESL+ AGA D  G+ R  L+     ++D++           T K E I  F 
Sbjct: 917  MACNKKVTESLIKAGAFDSLGHPRKGLMLVHADAIDSVMS---------TKKAEAIGQFD 967

Query: 929  HEKGTFSDKITLEKFSVE------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
               G  +D+     F V+      +S  R   E+ +LG Y SGHPL+  + ILR+     
Sbjct: 968  LFGGAEADESITSVFDVKIPEEEWDSKHRLALEREMLGLYVSGHPLNGVEHILRQQS--- 1024

Query: 983  YEESVATI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + S+A I       G  + L  ++ S  ++  + G     V   +     E  FFP
Sbjct: 1025 -DTSIAAILEGGVQDGAQVTLGGIIASVDRRVNKNGLTWCIVQLEDLVGGIEVLFFP 1080


>gi|291513949|emb|CBK63159.1| DNA polymerase III, alpha subunit [Alistipes shahii WAL 8301]
          Length = 1269

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 373/1134 (32%), Positives = 591/1134 (52%), Gaps = 133/1134 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF---------- 58
            P FVHL VH+ YS+L+G  S+  ++DK  AD QP IA+TD  ++F   EF          
Sbjct: 2    PQFVHLHVHTQYSILDGQASVQRLVDKAMADGQPGIAVTDHGDMFGIKEFYNYVQKVKGK 61

Query: 59   -----------------SQKACA-------------------AGIQPIIGCQLDIDMQDN 82
                               + CA                      +PIIGC++ +  +  
Sbjct: 62   CKDKAAEAEARIAALRDGTETCADPAAEIAKCERQLEECRRKLAFKPIIGCEVYVARR-- 119

Query: 83   LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
             ++ ++   P  +   ++LL    +GY  LI++VS+ +  +      R   + +++   E
Sbjct: 120  -RLHDKEGKPDQSGYHLILLAKNLKGYHNLIKIVSKAWT-EGFYMRPRTDRTEIEKY-HE 176

Query: 143  GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR 196
            GLI  +   +G + RA   N  + AE+ +   KK+FGD  Y+ LQ H+       ++ Y 
Sbjct: 177  GLICCSACLAGEVPRAITANDLEKAEESIRWHKKVFGDDYYLELQLHKATVERANHEAYP 236

Query: 197  -----ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                    + +LA  H + +V TN+  F+ E++ EAHD L+ ++    +    R   +  
Sbjct: 237  MQLHVNKHLRELAAKHNVRMVCTNDVHFVDEDNAEAHDRLICLSTGKDLDDPKRMLYSKQ 296

Query: 252  HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILP----------------R 294
             +LK  +EM +IF    PEA+  TV+I  +       HAPI+P                R
Sbjct: 297  EWLKTTAEMAAIFGQTDPEAMSTTVDICNQIECYSIDHAPIMPNFEIPEEFGTEAEYRAR 356

Query: 295  FIEKECDD----------IQKEEENELRNKAVAGLE----VRLAQGAIAK----GYH--- 333
              EK+  D          +  EEE   + + + G +    ++     +AK    G H   
Sbjct: 357  LTEKDLFDEFTRDENGNVVMSEEEGLKKIQKLGGYDKLYRIKFEADYLAKLTMDGAHRRY 416

Query: 334  ----AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAY 388
                 ++  +RL FEL+++  M F GYFLIV DFI+ A++  ++ VGPGRGS AGS  AY
Sbjct: 417  GEQLTEEQEERLKFELHIMKTMGFPGYFLIVQDFIRAAREELDVSVGPGRGSAAGSAVAY 476

Query: 389  ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
             L IT IDP+ + LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA IIT
Sbjct: 477  CLGITQIDPIAYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTQKYGKEKVAHIIT 536

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLAD- 505
            +G++  K A++DV R  ++  S+ DRLCKL+P+  P   ++LQ AI      + A  +D 
Sbjct: 537  YGTMATKLAIKDVARVQKLMLSESDRLCKLVPDKIPDKKLNLQNAIDYVPELKAAEQSDN 596

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMK 561
            P +   +  ++ LEG  R+   HA G +I    ++  VP+     ++    + VTQ+   
Sbjct: 597  PILRDTIRYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGS 656

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLS-LIPFDDHETYHLLTTKGTLG 619
             IE  GLIK DFLGLKTL++++ +++ +   +GVK+D+      +D  TY L     T+G
Sbjct: 657  VIEDTGLIKMDFLGLKTLSIIKDAVENIRLTKGVKIDIDDFTIINDPATYRLYGEGRTVG 716

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
             FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  +  RK+G+  I    P+++
Sbjct: 717  TFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIARKHGRSPIEYDIPVME 776

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
              LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+K+++D  K +FI G  KN
Sbjct: 777  KYLKDTYGITVYQEQVMLLSRLLANFTRGESDTLRKAMGKKLKDKLDHLKPKFIEGGRKN 836

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA ++  + N+
Sbjct: 837  GHDPKVLEKIWGDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVLSRNLTNI 896

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFK---VGDNRIYYSLAAIKGVGTTTARHIM-E 855
            E++  +  + ++  I +M P +N     F     GD R  + LAA+KGVG      I+ E
Sbjct: 897  EQLTLYMNECKRMGISVMGPDINESMRTFSSNAAGDVR--FGLAAVKGVGAAAVESIIAE 954

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG------YSRMQLLQS----- 904
              A+ PF  + DF  RV+   +NR+ LE+L +AGA D         Y  + L  S     
Sbjct: 955  RKANGPFKDIYDFVERVNYSLVNRKCLENLAYAGAFDSISDFARCKYFGVDLRDSSGITF 1014

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            ++ + +Y Q  +  + N  +++F   +     +  L   +  +   +   E+ ++G Y S
Sbjct: 1015 IEQLMRYGQRFQTEQNNAQQSLFGGGEHVDIQRPVLPACADWSQLEKLTKEREMVGLYLS 1074

Query: 965  GHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             HPLD YK I+  M        E++  ++G  I +A MVV  Q   T+ G   G
Sbjct: 1075 AHPLDDYKIIIDHMCKTQLSELENLDALKGQEIAVAGMVVGVQNLMTKTGKPWG 1128


>gi|228475228|ref|ZP_04059954.1| DNA polymerase III subunit alpha [Staphylococcus hominis SK119]
 gi|228270839|gb|EEK12241.1| DNA polymerase III subunit alpha [Staphylococcus hominis SK119]
          Length = 1067

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 353/1036 (34%), Positives = 550/1036 (53%), Gaps = 101/1036 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +HS+Y LL  +L +N+++ K  A+   A+AITDTN L+   +F       GI+PI
Sbjct: 2    FVHLNIHSTYDLLYSSLKINDVVSKAKANGYQALAITDTNVLYGFPKFYDACVNEGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G            MT        T+ +I L     EG   L +L S + +    KQ   
Sbjct: 62   FG------------MTVMVSDEISTIETI-LFAKNNEGLHALYQLSSAINM----KQKTT 104

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRH 189
            I L WLQ+                   A  F  +  + + L+ T K    + +++N    
Sbjct: 105  IPLKWLQKYSYH--------------LAIVFKDANASHQSLIQTLKN--NESVFIN---- 144

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKDR 245
                        QL ++ +  +V  NN+ +L+ ED +    L A+ ++T    V   KD 
Sbjct: 145  ---------HTSQLDFSDD-KIVFLNNARYLNPEDADTILALKAIKNNTKLDLVNDIKDA 194

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                P       SE +       + + NT  +A  C+  +Q H  +LP F        + 
Sbjct: 195  HEYFP------TSENIKELQLSEKIIANTKALADECNAEIQYHQNLLPNF--------KT 240

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +   ++  +  L+  L +  + K    Q Y  RL  E ++I  M F  YFLIV+D I 
Sbjct: 241  PNQQSAKSYLLEKLKYNLKEFKLDKN---QRYIDRLHHEYSIITNMGFEDYFLIVSDLIH 297

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK +++ VGPGRGS AGS+ +Y L IT IDP++F LLFERFLNP+R++MPD DIDF   
Sbjct: 298  FAKTHDVMVGPGRGSSAGSLVSYLLGITTIDPIKFDLLFERFLNPERVTMPDIDIDFEDT 357

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR++VI+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+    
Sbjct: 358  RREKVIQYVQEKYGQYHVSGIVTFGHLLARAVARDVGRIIGFDEKTLNEISNLIPHQLG- 416

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++L+    + +F+         ++  EIS+KLEGL RH STHAAGI+I D+PL    P+
Sbjct: 417  -ITLEEAYQNEKFKAFVHKSYRHEKWFEISKKLEGLPRHTSTHAAGIIINDKPLYHFAPL 475

Query: 546  YRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603
                  D  + TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  +PF
Sbjct: 476  ---TMGDTGILTQWTMTEAERLGLLKIDFLGLRNLSIIHQIITQVKKDLNIDIDIERLPF 532

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D + + LL+   T GIFQLES G+R+ L  +QP+  EDI+A+ SLYRPGP+  I  Y +
Sbjct: 533  NDQKVFKLLSLGNTTGIFQLESEGVRKVLMELQPEHFEDIVAVTSLYRPGPMQEIPTYIS 592

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++ +  I  +HP ++P+LK+T GVIIYQEQ+MQIA   + +S  +AD+LRRAM KK + 
Sbjct: 593  RRHRQSDIKYLHPDLEPILKKTYGVIIYQEQIMQIASQFANFSYGQADILRRAMSKKNRA 652

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++ +++ FI GA  N    +I+  IFEL+ KFADYGF ++HA +Y+ I+Y  A++K HY
Sbjct: 653  ILESERQHFIEGAVSNNYDASISERIFELILKFADYGFPRAHAVSYSKIAYIMAYLKVHY 712

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P  F A  ++  + N  K     ++A+  ++ I+PP +N     +K  +  IY SL AIK
Sbjct: 713  PNYFYANILSNVIGNETKTAIIIEEAKTQSLNILPPDINKSHWFYKATEKNIYLSLGAIK 772

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG  + + I++   +   +    DF  R+  +   R++LE+L+  GA D FG +R  LL
Sbjct: 773  GVGYQSVKSIVDERIENGLYKDFFDFTRRIPKRIKTRKLLEALICVGAFDSFGKTRSTLL 832

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             ++D +      VE++     E +F     K ++ DK   E+FS +  S     E+  LG
Sbjct: 833  STIDEVIDQVSNVEQD-----EFLFNMLTPKQSYEDK---EEFSDQIISAY---EKEYLG 881

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK---TRKGSRIGW 1017
            FY S HP++    I + +GI        TI+ N++    ++V   Q K   T+ G  + +
Sbjct: 882  FYISNHPVEKLFYIKQYLGI-------FTIK-NSLDYQPILVQVNQFKQIRTKTGQHMAF 933

Query: 1018 VTFSEPAKEYEANFFP 1033
            +   +     +   FP
Sbjct: 934  LVLDDGRTTIDGVLFP 949


>gi|314936197|ref|ZP_07843544.1| DNA polymerase III, alpha subunit [Staphylococcus hominis subsp.
            hominis C80]
 gi|313654816|gb|EFS18561.1| DNA polymerase III, alpha subunit [Staphylococcus hominis subsp.
            hominis C80]
          Length = 1067

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 353/1036 (34%), Positives = 551/1036 (53%), Gaps = 101/1036 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +HS+Y LL  +L +N+++ K  A+   A+AITDTN L+   +F       GI+PI
Sbjct: 2    FVHLNIHSTYDLLYSSLKINDVVSKAKANGYQALAITDTNVLYGFPKFYDACVNEGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G            MT        T+ +I L     EG   L +L S + +    KQ   
Sbjct: 62   FG------------MTVMVSDEISTIETI-LFAKNNEGLHALYQLSSAINM----KQKTT 104

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRH 189
            I L WLQ+                   A  F  +  + + L+ T K    + +++N    
Sbjct: 105  IPLKWLQKYSYH--------------LAIVFKDANASHQSLIQTLKN--NESVFIN---- 144

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKDR 245
                        QL ++ +  +V  NN+ +L+ ED +    L A+ ++T    V   KD 
Sbjct: 145  ---------HTSQLDFSDD-KIVFLNNARYLNPEDADTILALKAIKNNTKLDLVNDIKDA 194

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                P       SE +       + + NT  +A  C+  +Q H  +LP F        + 
Sbjct: 195  HEYFP------TSENIKELQLSEKIIANTKALADECNAEIQYHQNLLPNF--------KT 240

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +   ++  +  L+  L +  + K    Q Y  RL  E ++I  M F  YFLIV+D I 
Sbjct: 241  PNQQSAKSYLLEKLKYNLKEFKLDKD---QRYIDRLHHEYSIITNMGFEDYFLIVSDLIH 297

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK +++ VGPGRGS AGS+ +Y L IT IDP++F LLFERFLNP+R++MPD DIDF   
Sbjct: 298  FAKTHDVMVGPGRGSSAGSLVSYLLGITTIDPIKFDLLFERFLNPERVTMPDIDIDFEDT 357

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR++VI+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+    
Sbjct: 358  RREKVIQYVQEKYGQYHVSGIVTFGHLLARAVARDVGRIIGFDEKTLNEISNLIPHQLG- 416

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++L+    + +F+         ++  EIS+KLEGL RH STHAAGI+I D+PL    P+
Sbjct: 417  -ITLEEAYQNEKFKAFVHKSYRHEKWFEISKKLEGLPRHTSTHAAGIIINDKPLYHFAPL 475

Query: 546  YRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603
                  D  + TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  +PF
Sbjct: 476  ---TMGDTGILTQWTMTEAERLGLLKIDFLGLRNLSIIHQIITQVKKDLNIDIDIERLPF 532

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D + + LL+   T GIFQLES G+R+ L  +QP+  EDI+A+ SLYRPGP+  I  Y +
Sbjct: 533  NDQKVFKLLSLGNTTGIFQLESEGVRKVLMELQPEHFEDIVAVTSLYRPGPMQEIPTYIS 592

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++ + +I  +HP ++P+LK+T GVIIYQEQ+MQIA   + +S  +AD+LRRAM KK + 
Sbjct: 593  RRHRQSEIKYLHPDLEPILKKTYGVIIYQEQIMQIASQFANFSYGQADILRRAMSKKNRA 652

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++ +++ FI GA  N    +I+  IFEL+ KFADYGF ++HA +Y+ I+Y  A++K HY
Sbjct: 653  ILESERQHFIEGAVSNNYDASISERIFELILKFADYGFPRAHAVSYSKIAYIMAYLKVHY 712

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P  F A  ++  + N  K     ++A+  ++ I+PP +N     +K  +  IY SL AIK
Sbjct: 713  PNYFYANILSNVIGNETKTAIIIEEAKTQSLNILPPDINKSHWFYKATEKNIYLSLGAIK 772

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG  + + I++   +   +    DF  R+  +   R++LE+L+  GA D FG +R  LL
Sbjct: 773  GVGYQSVKSIVDERIENGLYKDFFDFTRRIPKRIKTRKLLEALICVGAFDSFGKTRSTLL 832

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             ++D +      VE++     E +F     K ++ DK   E+FS +  S     E+  LG
Sbjct: 833  STIDEVIDQVSNVEQD-----EFLFNMLTPKQSYEDK---EEFSDQIISAY---EKEYLG 881

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK---TRKGSRIGW 1017
            FY S HP++    I + +GI        TI+ N++    ++V   Q K   T+ G  + +
Sbjct: 882  FYISNHPVEKLFYIKQYLGI-------FTIK-NSLDYQPILVQVNQFKQIRTKTGQHMAF 933

Query: 1018 VTFSEPAKEYEANFFP 1033
            +   +     +   FP
Sbjct: 934  LVLDDGRTTIDGVLFP 949


>gi|315606343|ref|ZP_07881359.1| DNA-directed DNA polymerase III alpha subunit [Prevotella buccae ATCC
            33574]
 gi|315252034|gb|EFU32007.1| DNA-directed DNA polymerase III alpha subunit [Prevotella buccae ATCC
            33574]
          Length = 1240

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 364/1053 (34%), Positives = 544/1053 (51%), Gaps = 90/1053 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----------Q 60
            FVHL VH+ YS+L+G   + N++ K   D    +A+TD   +F   EF+          +
Sbjct: 4    FVHLHVHTYYSILDGQSKIANLVKKAVDDGMRGMALTDHGVMFGIKEFADICAGLNKERK 63

Query: 61   KACAAGIQPIIGCQLDID-MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            K      +PI GC++ +   +   K+   G     +   +++L     GY+ LI+LVSR 
Sbjct: 64   KEGKEPFKPIFGCEMYVARHRKEDKVKEHGDN---SGYHLIVLAKNYNGYKNLIKLVSRS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++ D      R     L++   E LI+ +   +G +           A +    + ++FG
Sbjct: 121  WV-DGYYYRPRTDREDLEKY-HEDLIVCSACIAGEVPAKILKGDIAGAREACEWYHRVFG 178

Query: 180  DRLYVNLQRHRGYD------------RYRESQV-VQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D            + R ++V ++ A  + + L+ TN+  F  +E  E
Sbjct: 179  DDYYLELQRHEVTDPTVLANRETYPLQQRANKVLIEFAKEYGIKLICTNDCHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    ++  +R R +   + K++ EM  IFSD+P+AL NT+EI  +  F   
Sbjct: 239  AHDHLLCLSTQADLNDPNRMRYSKQEWFKSKQEMNDIFSDIPDALTNTLEILDKVEFYSI 298

Query: 287  VHAPILPRFI--------EKECDDIQKEE-----------ENEL---------------- 311
             H PI+P F         E+      KEE           EN+L                
Sbjct: 299  EHGPIMPFFPIPEDFGTEEQWRQKFSKEELYKEFTCDEKGENQLSPEDGQAVIDRLGGYD 358

Query: 312  ---RNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R K  A    +LA     K Y    +++ ++ +DFEL+V+  M F GYFLIV DFI 
Sbjct: 359  KIYRIKFEADYLGKLAYDGAKKLYGDPLSEEVKEHIDFELHVMKTMGFPGYFLIVQDFIN 418

Query: 366  WAK-KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             A+ K  + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF  
Sbjct: 419  AAREKLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDTDFDD 478

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN--- 481
            D R  V+++V +KYGHE  A IIT+ S+  K +++DV R  ++P  + + LCK IP+   
Sbjct: 479  DGRGRVLQWVMDKYGHENCAHIITYASMATKNSIKDVARVEKLPLERSNALCKAIPDRLP 538

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            D A      AI      +EA ++    +R  ++ ++ LEG  R    HA G +I   P+S
Sbjct: 539  DGAKMNLTNAIKYTPELQEAAVSIDERERNTIKYAKMLEGTVRGTGIHACGFIICRNPIS 598

Query: 541  QLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
              VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   + Q  G 
Sbjct: 599  DWVPISTADDPDFPDKKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVVKQTTGD 658

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VDL  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +LYRPGP
Sbjct: 659  VVDLDNIPIDDELTYKLYQEGRTIGTFQFESAGMQKYLRELHPTVFEDLIAMNALYRPGP 718

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+D LR
Sbjct: 719  MDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESDALR 778

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +AMGKK K  +D  K +FI    +NG    +   I+    KFA Y FNKSHA  Y+ ++Y
Sbjct: 779  KAMGKKKKAIVDAMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYAFNKSHATCYSWVAY 838

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833
            QTA++K HYP EF+AA MT     + +I K  ++ +  NI  + P VN     F V    
Sbjct: 839  QTAYLKAHYPAEFMAALMTRRFSQITEITKLMEECKSMNISTLGPDVNESYSGFGVNRKG 898

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + L+AIKG+GT  A  I+ E   + P+  + DF  RVD   +NR+  ESL  +G  D
Sbjct: 899  EIRFGLSAIKGMGTAAAEAIVSEREKNGPYKDIFDFAQRVDYSCVNRKAFESLALSGGFD 958

Query: 893  CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
             FG  R Q +         LD++ +Y Q  + ++     ++F            + K  V
Sbjct: 959  GFGLQREQYMGVNSKGEVFLDSLVRYGQRYQLDQQQATNSLFGGMDMVEIATPPVPKGEV 1018

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
             ++  +   E+ ++G Y S HPLD Y  IL+ +
Sbjct: 1019 WSTIEKLNKERDLVGIYLSAHPLDEYTVILKSI 1051


>gi|325860343|ref|ZP_08173463.1| DNA polymerase III, alpha subunit [Prevotella denticola CRIS 18C-A]
 gi|325482149|gb|EGC85162.1| DNA polymerase III, alpha subunit [Prevotella denticola CRIS 18C-A]
          Length = 1239

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 357/1056 (33%), Positives = 540/1056 (51%), Gaps = 96/1056 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA------ 64
            +VHL VH+ YS+L+G   +  ++DK  AD    +A+TD   +F   EFS   CA      
Sbjct: 4    YVHLHVHTDYSVLDGQSKVTRLVDKAVADGMKGMAVTDHGVMFGIKEFSD-YCAKVNKGR 62

Query: 65   -----AGIQPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
                 A  +P+ GC++ +    M D  K  +       +   +++L     GY+ LI+LV
Sbjct: 63   KEKGEAPFKPVFGCEMYVARRTMHDKDKSMHDN-----SGYHLIVLAKNYHGYKNLIKLV 117

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S+ ++ D      R     L++   E LI+ +   +G I      +  + A +    + +
Sbjct: 118  SKAWV-DGYYYKPRTDREQLEKY-HEDLIVCSACIAGEIPNKIIHDDIEGAREACEWYHR 175

Query: 177  LFGDRLYVNLQRHR-----------GYDRYRESQVVQLAYTHE--LPLVATNNSLFLSEE 223
            +FGD  Y+ LQRH             Y   +++  V L +  E  + ++ TN+  F  +E
Sbjct: 176  VFGDDFYLELQRHEVKDPTLVANREAYPLQQKANKVLLRFAEEYGIKVICTNDCHFEDKE 235

Query: 224  DYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
              EAHD L+ ++ +  +    R R +   + K R EM  +FSD+PEAL NT+EI  +   
Sbjct: 236  TAEAHDHLLCLSTNEDLDDPKRMRYSKQEWFKTRQEMNEVFSDIPEALTNTLEILDKVEI 295

Query: 284  ILQVHAPILPRF-------IEKEC------DDIQKE-------------EENELRNKAVA 317
                H PI+P F        E+E       DD+ +E             EE +   + + 
Sbjct: 296  YSIDHGPIMPFFPIPEDFGTEEEWRKKFSEDDLYREFTTDENGEHPLPAEEGQKVIRRLG 355

Query: 318  GLE------------VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            G E             +LA     K Y    + + +  + FEL+V+  M F GYFLIV D
Sbjct: 356  GYEKIYRIKFEADYLAKLAYDGAGKLYGDPLSDEVKSHIRFELHVMKTMGFPGYFLIVQD 415

Query: 363  FIQWAK-KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            FI  A+ K  + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D D
Sbjct: 416  FINAAREKLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDTD 475

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  D R +V+++V +KYGHE  A IIT+ ++  K ++RDV R  ++     + LCK IP+
Sbjct: 476  FDDDGRGKVLQWVMDKYGHENCAHIITYSTMATKNSIRDVARVEKLSLDVSNGLCKAIPD 535

Query: 482  DPAHPVSL---QAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDR 537
                 + +    AI    R +EA +++ + +R  ++ ++ LEG  R    HA G +I   
Sbjct: 536  RLPDGMKMNLTNAIKCTPRLQEAEVSEDARERNTIKYAKMLEGTVRGTGIHACGFIICRN 595

Query: 538  PLSQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
            P+   VP+      D     +PVTQ++   IE  GLIK DFLGLKTL+ L+++   + Q 
Sbjct: 596  PIDDWVPVSTASDPDFPEKKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVIRQT 655

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             G  VDL  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +LYR
Sbjct: 656  TGDVVDLDNIPIDDELTYQLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNALYR 715

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+D
Sbjct: 716  PGPMDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESD 775

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             LR+AMGKK K  +D+ K +FI    +NG    +   I+    KFA Y FNKSHA  Y+ 
Sbjct: 776  ALRKAMGKKKKAIVDQMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYAFNKSHATCYSW 835

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K HYP E++AA MT     + +I K  ++ +   I  + P +N   + F V 
Sbjct: 836  VAYQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKAMKITTLGPDINESQIGFGVN 895

Query: 832  D-NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                I + LAAIKG+G + A  I+ E   +  +  + DF  RVD   +NR+  ESL ++G
Sbjct: 896  SRGEIRFGLAAIKGMGASAAESIVREREKNGLYKDIYDFAERVDISNVNRKAFESLAYSG 955

Query: 890  ALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
              D FG  R Q           LD I +Y Q  +  +  +  ++F              K
Sbjct: 956  GFDSFGLQREQYFAETGKGSLFLDTIVRYGQLYQAEKAQQQNSLFGGMDAVEVMHPVAPK 1015

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                 +  +   E+ ++G Y S HPLD Y  +L  M
Sbjct: 1016 TEKWPAIEKLNKERELVGIYLSAHPLDEYSVVLDNM 1051


>gi|327314343|ref|YP_004329780.1| DNA polymerase III subunit alpha [Prevotella denticola F0289]
 gi|326944718|gb|AEA20603.1| DNA polymerase III, alpha subunit [Prevotella denticola F0289]
          Length = 1239

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 357/1056 (33%), Positives = 540/1056 (51%), Gaps = 96/1056 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA------ 64
            +VHL VH+ YS+L+G   +  ++DK  AD    +A+TD   +F   EFS   CA      
Sbjct: 4    YVHLHVHTDYSVLDGQSKVTRLVDKAVADGMKGMAVTDHGVMFGIKEFSD-YCAKVNKGR 62

Query: 65   -----AGIQPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
                 A  +P+ GC++ +    M D  K  +       +   +++L     GY+ LI+LV
Sbjct: 63   KEKGEAPFKPVFGCEMYVARRTMHDKDKSMHDN-----SGYHLIVLAKNYHGYKNLIKLV 117

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S+ ++ D      R     L++   E LI+ +   +G I      +  + A +    + +
Sbjct: 118  SKAWV-DGYYYKPRTDREQLEKY-HEDLIVCSACIAGEIPSKIIHDDIEGAREACEWYHR 175

Query: 177  LFGDRLYVNLQRHR-----------GYDRYRESQVVQLAYTHE--LPLVATNNSLFLSEE 223
            +FGD  Y+ LQRH             Y   +++  V L +  E  + ++ TN+  F  +E
Sbjct: 176  VFGDDFYLELQRHEVKDPTLVANREAYPLQQKANKVLLRFAEEYGIKVICTNDCHFEDKE 235

Query: 224  DYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
              EAHD L+ ++ +  +    R R +   + K R EM  +FSD+PEAL NT+EI  +   
Sbjct: 236  TAEAHDHLLCLSTNEDLDDPKRMRYSKQEWFKTRQEMNEVFSDIPEALTNTLEILDKVEI 295

Query: 284  ILQVHAPILPRF-------IEKEC------DDIQKE-------------EENELRNKAVA 317
                H PI+P F        E+E       DD+ +E             EE +   + + 
Sbjct: 296  YSIDHGPIMPFFPIPEDFGTEEEWRKKFSEDDLYREFTTDENGEHPLPAEEGQKVIRRLG 355

Query: 318  GLE------------VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            G E             +LA     K Y    + + +  + FEL+V+  M F GYFLIV D
Sbjct: 356  GYEKIYRIKFEADYLAKLAYDGAGKLYGDPLSDEVKSHIRFELHVMKTMGFPGYFLIVQD 415

Query: 363  FIQWAK-KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            FI  A+ K  + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D D
Sbjct: 416  FINAAREKLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDTD 475

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  D R +V+++V +KYGHE  A IIT+ ++  K ++RDV R  ++     + LCK IP+
Sbjct: 476  FDDDGRGKVLQWVMDKYGHENCAHIITYSTMATKNSIRDVARVEKLSLDVSNGLCKAIPD 535

Query: 482  DPAHPVSL---QAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDR 537
                 + +    AI    R +EA +++ + +R  ++ ++ LEG  R    HA G +I   
Sbjct: 536  RLPDGMKMNLTNAIKCTPRLQEAEVSEDARERNTIKYAKMLEGTVRGTGIHACGFIICRN 595

Query: 538  PLSQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
            P+   VP+      D     +PVTQ++   IE  GLIK DFLGLKTL+ L+++   + Q 
Sbjct: 596  PIDDWVPVSTASDPDFPEKKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVIRQT 655

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             G  VDL  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +LYR
Sbjct: 656  TGDVVDLDNIPIDDELTYQLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNALYR 715

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+D
Sbjct: 716  PGPMDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESD 775

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             LR+AMGKK K  +D+ K +FI    +NG    +   I+    KFA Y FNKSHA  Y+ 
Sbjct: 776  ALRKAMGKKKKAIVDQMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYAFNKSHATCYSW 835

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K HYP E++AA MT     + +I K  ++ +   I  + P +N   + F V 
Sbjct: 836  VAYQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKAMKITTLGPDINESQIGFGVN 895

Query: 832  D-NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                I + LAAIKG+G + A  I+ E   +  +  + DF  RVD   +NR+  ESL ++G
Sbjct: 896  SRGEIRFGLAAIKGMGASAAESIVREREKNGLYKDIYDFAERVDISNVNRKAFESLAYSG 955

Query: 890  ALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
              D FG  R Q           LD I +Y Q  +  +  +  ++F              K
Sbjct: 956  GFDSFGLQREQYFAETGKGSLFLDTIVRYGQLYQAEKAQQQNSLFGGMDAVEVMHPVAPK 1015

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                 +  +   E+ ++G Y S HPLD Y  +L  M
Sbjct: 1016 TEKWPAIEKLNKERELVGIYLSAHPLDEYSVVLDNM 1051


>gi|288926043|ref|ZP_06419972.1| DNA polymerase III, alpha subunit [Prevotella buccae D17]
 gi|288337263|gb|EFC75620.1| DNA polymerase III, alpha subunit [Prevotella buccae D17]
          Length = 1240

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 363/1053 (34%), Positives = 544/1053 (51%), Gaps = 90/1053 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----------Q 60
            FVHL VH+ YS+L+G   + N++ K   D    +A+TD   +F   EF+          +
Sbjct: 4    FVHLHVHTYYSILDGQSKIANLVKKAVDDGMRGMALTDHGVMFGIKEFADICAGLNKERK 63

Query: 61   KACAAGIQPIIGCQLDID-MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            K      +PI GC++ +   +   K+   G     +   +++L     GY+ LI+LVSR 
Sbjct: 64   KEGKEPFKPIFGCEMYVARHRKEDKVKEHGDN---SGYHLIVLAKNYNGYKNLIKLVSRS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++ D      R     L++   E LI+ +   +G +           A +    + ++FG
Sbjct: 121  WV-DGYYYRPRTDREDLEKY-HEDLIVCSACIAGEVPAKILKGDIAGAREACEWYHRVFG 178

Query: 180  DRLYVNLQRHRGYD------------RYRESQV-VQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D            + R ++V ++ A  + + L+ TN+  F  +E  E
Sbjct: 179  DDYYLELQRHEVTDPTVLANRETYPLQQRANKVLIEFAKEYGIKLICTNDCHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    ++  +R R +   + K++ EM  IFSD+P+AL NT+EI  +  F   
Sbjct: 239  AHDHLLCLSTQADLNDPNRMRYSKQEWFKSKQEMNDIFSDIPDALTNTLEILDKVEFYSI 298

Query: 287  VHAPILPRFI--------EKECDDIQKEE-----------ENEL---------------- 311
             H PI+P F         E+      KEE           EN+L                
Sbjct: 299  EHGPIMPFFPIPEDFGTEEQWRQKFSKEELYKEFTCDEKGENQLSPEDGQAVIDRLGGYD 358

Query: 312  ---RNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R K  A    +LA     K Y    +++ ++ +DFEL+V+  M F GYFLIV DFI 
Sbjct: 359  KIYRIKFEADYLGKLAYDGAKKLYGDPLSEEVKEHIDFELHVMKTMGFPGYFLIVQDFIN 418

Query: 366  WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF  
Sbjct: 419  AAREELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDTDFDD 478

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN--- 481
            D R  V+++V +KYGHE  A IIT+ S+  K +++DV R  ++P  + + LCK IP+   
Sbjct: 479  DGRGRVLQWVMDKYGHENCAHIITYASMATKNSIKDVARVEKLPLERSNALCKAIPDRLP 538

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            D A      AI      +EA ++    +R  ++ ++ LEG  R    HA G +I   P+S
Sbjct: 539  DGAKMNLTNAIKYTPELQEAAVSIDERERNTIKYAKMLEGTVRGTGIHACGFIICRNPIS 598

Query: 541  QLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
              VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   + Q  G 
Sbjct: 599  DWVPISTADDPDFPDKKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVVKQTTGD 658

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VDL  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +LYRPGP
Sbjct: 659  VVDLDNIPIDDELTYKLYQEGRTIGTFQFESAGMQKYLRELHPTVFEDLIAMNALYRPGP 718

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+D LR
Sbjct: 719  MDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESDALR 778

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +AMGKK K  +D  K +FI    +NG    +   I+    KFA Y FNKSHA  Y+ ++Y
Sbjct: 779  KAMGKKKKAIVDAMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYAFNKSHATCYSWVAY 838

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833
            QTA++K HYP EF+AA MT     + +I K  ++ +  NI  + P VN     F V    
Sbjct: 839  QTAYLKAHYPAEFMAALMTRRFSQITEITKLMEECKSMNISTLGPDVNESYSGFGVNRKG 898

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + L+AIKG+GT  A  I+ E   + P+  + DF  RVD   +NR+  ESL  +G  D
Sbjct: 899  EIRFGLSAIKGMGTAAAEAIVSEREKNGPYKDIFDFAQRVDYSCVNRKAFESLALSGGFD 958

Query: 893  CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
             FG  R Q +         LD++ +Y Q  + ++     ++F            + K  V
Sbjct: 959  GFGLQREQYMGVNSKGEVFLDSLVRYGQRYQLDQQQATNSLFGGMDMVEIATPPVPKGEV 1018

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
             ++  +   E+ ++G Y S HPLD Y  IL+ +
Sbjct: 1019 WSTIEKLNKERDLVGIYLSAHPLDEYTVILKSI 1051


>gi|239978950|ref|ZP_04701474.1| DNA polymerase III subunit alpha [Streptomyces albus J1074]
 gi|291450830|ref|ZP_06590220.1| DNA polymerase III subunit alpha [Streptomyces albus J1074]
 gi|291353779|gb|EFE80681.1| DNA polymerase III subunit alpha [Streptomyces albus J1074]
          Length = 1182

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 355/1075 (33%), Positives = 553/1075 (51%), Gaps = 70/1075 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VH+ YSLL+GA  L ++ D         IA++D  NL  A +F   A  AG+ 
Sbjct: 7    PPFTHLHVHTQYSLLDGAARLKDMFDACNEMGMTHIAMSDHGNLHGAYDFFHSAEKAGVT 66

Query: 69   PIIGCQLDIDMQDN-LKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSR 118
            PIIG +  +  +    K   Q   P      +          +  + + G   L  L S 
Sbjct: 67   PIIGIEAYVAPESRRTKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFRLSSD 126

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             Y     ++  R+    + +  +EGLI  TG  SG +         + A +    ++++F
Sbjct: 127  AYSEGWLQKWPRMDKESISQW-SEGLIASTGCPSGEVQTRLRLGQEEEALRAAAEYQEIF 185

Query: 179  G-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            G DR ++ L  H    +R     ++ +     +P + TN+S +    +  AHD L+ +  
Sbjct: 186  GKDRYFLELMDHGIEIERRVRQGLLDIGKKLGIPPLVTNDSHYTYSHESVAHDALLCIQT 245

Query: 237  STVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHA-PIL 292
               +S  DR R     +YLK+  EM +I S     E   NT+ +A +           ++
Sbjct: 246  GKNLSDPDRFRFDGTGYYLKSTEEMYAIDSSDAWQEGCRNTLLVAEQIDTTGMFEKRDLM 305

Query: 293  PRFIEKECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            P+F      DI     E    + +   G+  R   G        +D +++ ++E++VI +
Sbjct: 306  PKF------DIPDGFTEVTWFQEEVRRGMARRFPAGV------PEDRQRQAEYEMDVIIQ 353

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP
Sbjct: 354  MGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNP 413

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+
Sbjct: 414  ERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYA 473

Query: 471  QVDRLCKLIPND-------------PAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
              DRL K +P D             P HP   +A       R     +P V ++++ ++ 
Sbjct: 474  MGDRLTKAMPADVLGKGIDLDGITNPKHPRYSEA----GEIRGMYENEPDVKKVIDTAKG 529

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EGL R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+
Sbjct: 530  VEGLVRQMGVHAAGVIMSSEPIVDHAPLWTRHTDGVTITQWDYPQCESLGLLKMDFLGLR 589

Query: 578  TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT++  +   + A +G+ +DL  +P DD +T+ LL    TLG+FQ +   MR  L  M+
Sbjct: 590  NLTIMDDARKMVEANKGIDLDLLALPLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRLMK 649

Query: 637  PDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVII 690
            PD  EDI A+ +LYRPGP  +++   Y  RKNG+++I  IHP ++  LKE    T G+I+
Sbjct: 650  PDNFEDISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEILGLTYGLIV 709

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F  GA K G S      ++
Sbjct: 710  YQEQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVLFQEGAKKKGFSDEAIQALW 769

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            ++L  FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R
Sbjct: 770  DVLVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECR 829

Query: 811  QFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDF 868
            +  I+++PP VN    +F    D+ I + L A++ VGT     I+ A  A   F S  D+
Sbjct: 830  RMKIKVLPPDVNESVHNFAAQSDDVILFGLEAVRNVGTNVVESIIRARKAKGKFSSFPDY 889

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              +++++  N+R  ESL+ AGA D  G++R  L    + +      V++       ++F 
Sbjct: 890  LDKIEAQACNKRTTESLIKAGAFDALGHTRKGLTAHYEPMIDNVVAVKRKEAEGQFDLFG 949

Query: 929  HEKGTFSDKITLEKFSVE--------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
               G   D      F ++        + +     E+ +LG Y S HPL   + +L     
Sbjct: 950  ---GMGDDNADEPGFGLDIEFTDEEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKAD 1006

Query: 981  KGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G  +      G+   + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1007 AGIGQLTGGDFGDGAVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1061


>gi|158520278|ref|YP_001528148.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3]
 gi|158509104|gb|ABW66071.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3]
          Length = 1217

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 334/931 (35%), Positives = 513/931 (55%), Gaps = 41/931 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL VH+ YSLL+G +  ++++ +    + PA+AITD   +F  ++F  +A  AGI+PI
Sbjct: 8   FVHLHVHTCYSLLDGIIRPDDLVARAVEYKMPAVAITDHGTMFGVIQFYMEAVRAGIKPI 67

Query: 71  IGCQLDIDMQDNLKMTNQGKTP--FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IGC+  +  +     T   KTP     +  +VLL  T EGY+ L  L + +   D     
Sbjct: 68  IGCECYVAPR-----TIADKTPADHAGLSHLVLLAETMEGYRNLCRLAT-IAQQDGFFHK 121

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            RI  + LQ+   +GLI L+    G I           A+     +  + GDR +    +
Sbjct: 122 PRIDKALLQK-HAKGLIGLSACLKGEIPHLICRGRQDEADAAARQYCDMLGDRNFFLEVQ 180

Query: 189 HRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
           + G        + ++ ++    +PLV TN+  +L  ED  AH++ + +     +   DR 
Sbjct: 181 NNGLPEQETVNNALLDMSRRLSIPLVGTNDCHYLDPEDSRAHEIALCLQTGQTIHDTDRL 240

Query: 247 RVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILPRFIEKECDD 302
           +   +    K+  EM       P A  NTV IA RC         H P+L     K   D
Sbjct: 241 KFDTNQLNFKSTGEMCVFLEPFPRAAANTVAIAERCQVAFDFSARHFPVLETPPGKTMAD 300

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIV 360
           +       L + A+AGL+ R  Q    +  HA    Y+QRL +EL VI  M   GYFLI+
Sbjct: 301 M-------LEDSAMAGLKKRW-QHICKQSSHADKSVYQQRLAYELAVINEMGAPGYFLII 352

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
           ADFI +AK N I  GPGRGS  GS+  Y L IT +DP+   LLFERFLNP+R  MPD D+
Sbjct: 353 ADFIAYAKNNGILTGPGRGSAPGSLVCYCLGITGVDPIEHGLLFERFLNPERNVMPDIDV 412

Query: 421 DFCQDRRDEVIRYVQNKY----GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           D C + R+++ +Y+ +KY    G +  A I T G+++++AALR+VGRAL MP   V+++ 
Sbjct: 413 DICINGREKIHQYLMDKYNRDDGEDYAACIATLGTMRSRAALREVGRALIMPLDDVNKVA 472

Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
           KLIP  P       A+  +   R    + P    L+++ +KLEGL  H   +AAGIV+ D
Sbjct: 473 KLIP--PGARSLDDALKKEPALRALIDSKPEFGELMDVIRKLEGLPFHILMNAAGIVLSD 530

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
           +PL+   P+YR  + ++ +TQ + + +E  GL + D LG++ LT++  +L  +  +G + 
Sbjct: 531 KPLTCYTPLYR-FKGEM-ITQLDARSLETMGLARLDLLGMRDLTVISDTLQLIKNQGRQT 588

Query: 597 -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            DLS I   D  T  LL+   T G+FQL S+GM++ L   +P  + ++  L++LYRPG +
Sbjct: 589 PDLSRIDTTDAATCQLLSKGDTFGVFQLASTGMKELLVKARPRSLSEVAVLIALYRPGLL 648

Query: 656 DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
           +N +V  Y  RK G +        ++P+LKET G+ +YQEQ+MQ  Q+L+GY+  ++D  
Sbjct: 649 ENGMVADYLGRKQGLKDTTYPTAKLEPILKETCGLPVYQEQIMQAVQVLAGYTPGQSDDF 708

Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
           R+AMGK+I E++   ++RFI+GA+  GI K  A+ +FE L  F  YGFNK+H+ AYA I+
Sbjct: 709 RKAMGKRIAEKIADHRQRFINGAAAKGIDKATALQLFEQLEYFGAYGFNKAHSIAYAFIA 768

Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
           +Q A +K H+P EF+A  + +    V++I +   + R  NI ++PP VN     F V + 
Sbjct: 769 WQMACLKAHFPAEFMAVWLDISFGCVDRIARLIGECRDSNIPVLPPDVNQSARQFTVVNG 828

Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKK----LNRRVLESLVFA 888
           +I   LA +K         I+ E +A  PF SL DFC+R+ + +     +R+ LE+LV A
Sbjct: 829 QIRCGLACVKKTDKGLIDAIIAERTAAGPFVSLSDFCNRMSAGRPELLQDRKALENLVKA 888

Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
           GA D  G +R Q++  LD I K +  +++ R
Sbjct: 889 GAFDSTGATRSQMMAVLDEILKPSLDLQQPR 919


>gi|254382569|ref|ZP_04997927.1| DNA polymerase III subunit alpha [Streptomyces sp. Mg1]
 gi|194341472|gb|EDX22438.1| DNA polymerase III subunit alpha [Streptomyces sp. Mg1]
          Length = 1180

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 356/1084 (32%), Positives = 558/1084 (51%), Gaps = 80/1084 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+P F HL VH+ YSLL+GA  L ++ +         IA++D  NL  A +F   A  
Sbjct: 1    MTKTP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHTAQK 59

Query: 65   AGIQPIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113
            +G+ PIIG +  +  + + N +    G+ P      +          +  + + G   L 
Sbjct: 60   SGVTPIIGIEAYVAPESRRNKRRIQWGQ-PHQKRDDVSGSGGYTHKTIWAANSTGLHNLF 118

Query: 114  ELVSRMY----LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
             L S  Y    L    +        W     +EGLI  TG  SG +           A K
Sbjct: 119  RLSSDAYAEGWLTKWPRMDKETISQW-----SEGLIASTGCPSGELQTRLRLGQFDEALK 173

Query: 170  RLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                ++ +FG DR ++ L  H    +R     ++++     +P + TN+S +    +  A
Sbjct: 174  SASEYQDIFGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYASEATA 233

Query: 228  HDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRC-SF 283
            HD L+ +     +S  DR R     +YLK+  EM +I S     E   NT  +A +  + 
Sbjct: 234  HDALLCIQTGKNLSDPDRFRFDGTGYYLKSTEEMYAIDSSDAWQEGCANTKLVADQIDTE 293

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
             +     ++P+F   E       E +  R + + G+  R   G         D  ++ ++
Sbjct: 294  GMFKFRNLMPKFDIPEG----HTEVSWFREETMRGMHRRYPGGI------PDDRLKQAEY 343

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            E++ I  M F GYFL+VADFI WAK   I VGPGRGS AGS+ AYA+ ITD+DPL   L+
Sbjct: 344  EMDTIISMGFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPLTHGLI 403

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G+++AK A++D  R
Sbjct: 404  FERFLNPERVSMPDVDIDFDERRRVEVIRYVTEKYGQDKVAMIGTYGTIKAKNAIKDSAR 463

Query: 464  ALQMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDR 510
             L  PY+  DRL K +P              DP HP   +A       R     +P V +
Sbjct: 464  VLGYPYAMGDRLTKAMPADVLGKGIPLSGILDPQHPRYGEA----GEIRGMYENEPDVKK 519

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            +++ ++ +EGL R    HAAG+++    ++  VP++      + +TQ++    E  GL+K
Sbjct: 520  VIDTARGVEGLVRQMGVHAAGVIMSSETITDHVPVWVRHTDQVTITQWDYPSCESLGLLK 579

Query: 571  FDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             DFLGL+ LT++  ++  + A +G+ +DL  +P DD +T+ LL    TLG+FQ +   MR
Sbjct: 580  MDFLGLRNLTIMDDAVKMVKANKGIDIDLLALPLDDPKTFELLGRGDTLGVFQFDGGPMR 639

Query: 630  QALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE--- 684
              L  M+PD  EDI A+ +LYRPGP  +++   Y  RKN +++I  IHP ++  L+E   
Sbjct: 640  SLLRLMKPDNFEDISAVSALYRPGPMGMNSHTNYALRKNKQQEITPIHPELEGPLEEVLA 699

Query: 685  -TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T G+I+YQEQV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F  GA K G S 
Sbjct: 700  VTYGLIVYQEQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVIFEGGAKKKGFSD 759

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                 ++++L  FA Y FNK+H+AAY ++SY TA++K ++P E++A  +T   D+ +K  
Sbjct: 760  QAIKALWDVLVPFAGYAFNKAHSAAYGLVSYWTAYLKANFPAEYMAGLLTSVKDDKDKSA 819

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861
             +  + R+  I+++PP+VN    +F   GD+ I + L A++ VG      I++   A   
Sbjct: 820  IYLNECRRMGIKVLPPNVNESEPNFAAQGDDVILFGLTAVRNVGNNVVDSIIKTRKAKGK 879

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + +  DF  +V++   N+R +ESL+ AGA D  G++R  L+   + +      V++    
Sbjct: 880  YSTFPDFLDKVEAVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVAVKRKEAE 939

Query: 922  KHENIFAHEKGTFSDKITLEK----FSVENSSVRFEN------EQRVLGFYFSGHPLDVY 971
               ++F    G   D+   ++      VE S V +E       E+ +LG Y S HPL   
Sbjct: 940  GQFDLF----GAMGDEAGGDEPGFGLDVEFSDVEWEKSYLLAQEREMLGLYVSDHPLFGL 995

Query: 972  KPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            + +L      G  +        G  + +  ++   Q+K T++G+     T  + A   E 
Sbjct: 996  EHVLSDKTDAGISQLTGGEHSDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIEC 1055

Query: 1030 NFFP 1033
             FFP
Sbjct: 1056 MFFP 1059


>gi|294787463|ref|ZP_06752716.1| DNA polymerase III, alpha subunit [Parascardovia denticolens F0305]
 gi|315226967|ref|ZP_07868755.1| DNA-directed DNA polymerase III alpha subunit [Parascardovia
            denticolens DSM 10105]
 gi|294484819|gb|EFG32454.1| DNA polymerase III, alpha subunit [Parascardovia denticolens F0305]
 gi|315121099|gb|EFT84231.1| DNA-directed DNA polymerase III alpha subunit [Parascardovia
            denticolens DSM 10105]
          Length = 1189

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 357/1074 (33%), Positives = 563/1074 (52%), Gaps = 66/1074 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAAD-QQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            SFVHL  H+ YS L+GA+ +  ++  +A D  Q A+ ITD  N+  A E  + A  AGI+
Sbjct: 8    SFVHLHNHTDYSTLDGAVPVKKMV-AVAKDLGQKAVGITDHGNMHGAYEMWRTAVDAGIK 66

Query: 69   PIIGCQLDID----MQDNLKMTNQGK-------TPFPTVPSIVLLVSTAEGYQRLIELVS 117
            PIIG +  I       D  ++    K       +   +   + +      G   L++  S
Sbjct: 67   PIIGIEAYITPGTARGDKTRVHWGTKEQHSDDVSANGSYTHMTMWAQDDTGLVNLLKASS 126

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               L     ++ R+    LQ    +G+I  TG  SG +         + A +     + +
Sbjct: 127  VANLEGLMGKNPRMDRDILQTY-HQGIIATTGCPSGAVQTRLRLGQYKEALREAGELQDI 185

Query: 178  FG-DRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG +  YV +  H      R +Q ++++A     PLVATN+  +  E D  A D L+ + 
Sbjct: 186  FGKENFYVEIMDHGLEIETRVTQDLLRIAKEIGAPLVATNDCHYGLESDAAAQDALLCIN 245

Query: 236  HSTVVSQKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--APIL 292
              + ++  DR R     Y LK+  +M  +F + P+A +NT+EIA RC+ +   +     +
Sbjct: 246  SGSRLTDSDRFRFNGSGYFLKSAQQMRDLFKEFPQACDNTLEIAERCNVMFDDYEDGAFM 305

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P F   E  D      +++      GLE R   G        +D  ++ D+E  VI +M+
Sbjct: 306  PEFDCPEGWDATSLFLHDVEQ----GLEKRYPAGV------PEDVAKQADYECGVICQMQ 355

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFL+VAD+I WAK + + VGPGRGS AGS+ AYA+ IT++DP++  L+FERFLNP+R
Sbjct: 356  FCGYFLVVADYINWAKTHGVMVGPGRGSAAGSMVAYAMGITELDPIKHGLIFERFLNPER 415

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +S+PD D+DF    R++V+RYV  KYG ++VAQ +T+G+++ K AL+D  R +   +   
Sbjct: 416  VSLPDIDVDFDPAGREKVLRYVTEKYGSDKVAQCVTYGTIKTKQALKDSARIMDYDFQMG 475

Query: 473  DRLCKLIPND-PAHPVSLQAIAD--------DSRFREARLADPSVDRLLEISQKLEGLYR 523
            + + K +P       +SL  I D           FR+    +P V ++ E ++ +EGL R
Sbjct: 476  ETMTKALPGAVGGKDISLHDIFDLTAKRYPEAQEFRDLYNENPDVQKITEEAKGIEGLIR 535

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLL 582
                HA   ++  +P++   P+ +  R+D  V T F     E  GL+K DFLGL  LT++
Sbjct: 536  QTGVHACATIMASQPITNTSPLMK--RTDGTVTTTFEYHTCETLGLVKMDFLGLANLTVI 593

Query: 583  QKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++++  +   G   +DL  IP DD  TY LL++  TLG+FQL+S GM+  L+ ++PD   
Sbjct: 594  KEAIKNIHDNGKGDIDLEKIPIDDKATYDLLSSGHTLGVFQLDSDGMQSLLKQLKPDNFN 653

Query: 642  DIIALVSLYRPGPIDNIVVYNN---RKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQ 694
            DI AL++LYRPGP+D +  +NN   RKNG ++I  IHP ++     +L ET G+I+YQEQ
Sbjct: 654  DISALIALYRPGPMD-VDSHNNYAKRKNGLQEITPIHPELEKPLAQVLDETYGLIVYQEQ 712

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            V   A++L+GYSL  ADVLRRAMGKK  E + K+K  F +G  ++G S+  A  ++++L 
Sbjct: 713  VQSAARILAGYSLGRADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGYSEEAAQAVWDVLV 772

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNK+H+AAY ++SY TA++KTHYPVEF+AA +  E  N +K   +  + R+ NI
Sbjct: 773  PFAGYAFNKAHSAAYGLVSYWTAYLKTHYPVEFMAALLQGERSNKDKTALYLGECRRMNI 832

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM----EASADKPFDSLEDFCS 870
            +++PP VN     +      I + L A++ VG      I+    +A     F +  D+ +
Sbjct: 833  KVLPPDVNESVGHYSAVGKDIRFGLGAVRNVGDKVVDAIVAERDKAGGKGKFVNFLDWIN 892

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNI----QKYAQWVEKNRTNK 922
            R+  + LN+R +ESL+  GA D    +R  L      ++D +    +K A+       + 
Sbjct: 893  RMPVEVLNKRTVESLIKGGAFDSIDPNRRALFTIHQTAIDQVIPLKRKEAEGQFDLFADS 952

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMG 979
             E+  A         I++      +   +   E+ +LG Y S HPL     +   L  M 
Sbjct: 953  EEDDSASAAALGDANISVPPIDEWDKKTKLNFEREMLGLYVSDHPLSGLASVLASLSDMS 1012

Query: 980  IKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I       AT+     I +A +V    ++ ++ G     VT  +     +A FF
Sbjct: 1013 IAQLLNRAATMPEKAQITIAGLVTGVDRRVSKAGKPWAIVTLEDLEGSIQALFF 1066


>gi|111610197|gb|ABH11587.1| DNA-directed DNA polymerase alpha chain [Lactobacillus helveticus
            CNRZ32]
 gi|328467460|gb|EGF38535.1| DNA polymerase III, alpha subunit [Lactobacillus helveticus MTCC
            5463]
          Length = 1035

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 341/1028 (33%), Positives = 552/1028 (53%), Gaps = 52/1028 (5%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    ++++++        A+ ++D N  +  + F + A  AGI+P++G 
Sbjct: 6    LQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLSDVNVTYGLVNFYELAKKAGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQGKQSVRIC 132
            QL ++          G         ++    T  GY  L+ L S + +L D G+ +  + 
Sbjct: 66   QLRLN----------GLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +   + L+++   +   +  + F  + Q+    +   K+L  D LY+ +  +   
Sbjct: 116  LKDLSKYLADLLLIVPANTKSEL-LSLFETNKQLGSDLIRDLKELTSD-LYLGVYANPSM 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD- 251
              Y +  V  L+   +LPL+AT +S +L+  D      L A+A    + Q   P    + 
Sbjct: 174  QNYIDY-VRSLSKQFDLPLLATEDSEYLNPHDQFLQKTLRAIATGDKI-QDALPLAKQEG 231

Query: 252  -HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             HYL    +++  +   DL +A+ NT ++A +C+  +    P+LP++ +K+        E
Sbjct: 232  SHYLVEAEQLLQRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKF----VTSE 287

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L   A  GL+ R  Q  I       +Y++RL++EL VI +M F  YFLIV D I +  
Sbjct: 288  EYLHYLAQTGLQQRFGQNKIPA-----EYQKRLNYELRVINQMGFDDYFLIVWDVINYCH 342

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS  GS+ +Y+L IT++DP+ ++LLFERFLNP R  MPD D+D    +RD
Sbjct: 343  RVQITTGPGRGSACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRD 402

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   ++ +    IP      ++
Sbjct: 403  TVIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWVDAIPYSKGK-IT 461

Query: 489  LQAIADDSRFREARL---ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            L+     SR  E RL   A P    L + +  LEGL RH S HAAG+VI D  ++ +  +
Sbjct: 462  LKEAYQQSR--ELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGL 519

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                   +PVTQ   K++E  GL+K DFLGL+ LT+L   L+ + Q+G+K+D + IP +D
Sbjct: 520  QAGPLG-IPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLIRQQGIKIDPNQIPLND 578

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L     T  +FQ ES G+RQ L  + PD  ED++A+ +LYRPGP+ NI  +  RK
Sbjct: 579  AQTLQLFQQGKTDAVFQFESGGIRQVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVRRK 638

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ +
Sbjct: 639  NGQEAVRYPDPSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVI 698

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +++K +FI+G  K G +K +A  +++ + +FA+YGFN+SHA AY  I+Y  A++K HYP 
Sbjct: 699  EQEKGKFIAGTIKQGHTKAVAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPA 758

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  A +        K + +   A++ NI+I+PP +N   +++ + + +I   L AIKG+
Sbjct: 759  AFYTAMLNSAAG--AKAQDYIMQAQEANIKILPPDINHSSLEYALKNKQILVGLKAIKGL 816

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                AR I  A   KP+ SL DF  R+D K L    +++L+ AGA D    +R +LL + 
Sbjct: 817  RVDFAREI--ADNTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNC 874

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D I    Q   +N +       +   G    K   E    E +++    E++VLGF  + 
Sbjct: 875  DEIIANVQLTGQNIS------LSEILGNAPLKPADEPTGAEKAAM----EEKVLGFSTTT 924

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             PL   +   +K   +   +      G  +     ++  +Q +T+ G  + + +F++ + 
Sbjct: 925  SPLIAVQKFAQKFNSRPLNQFQLNESGVGV---GKLIRFKQIRTKNGKNMAFASFADTSG 981

Query: 1026 EYEANFFP 1033
            E E   FP
Sbjct: 982  EQEVVIFP 989


>gi|258508368|ref|YP_003171119.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
 gi|257148295|emb|CAR87268.1| DNA polymerase III, alpha subunit [Lactobacillus rhamnosus GG]
 gi|259649682|dbj|BAI41844.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
          Length = 1098

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 347/1041 (33%), Positives = 543/1041 (52%), Gaps = 85/1041 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L +++         A+A+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALPDLIQAAKNRGYSAVALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q++I                     ++++     GY +L++L +++ L  Q     
Sbjct: 62   LLGMQIEI-----------------ADAKLLVIAENNTGYHQLLKLSTQIMLAQQ----- 99

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               L++   +   GL  +T   S P   A        A+  L T K      LY+ +   
Sbjct: 100  --PLAFADLLPLNGLAAVTLPDS-PFGVAVSERHEDQAQTFLTTLKAKQPSSLYIGVD-- 154

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               + + E  +   A T +LPL+A  N L+    D     V++A+   + ++ +D P +T
Sbjct: 155  ---EEHLEGTLPAFADTVKLPLLALGNVLYRDPTDAFTQKVMVAIEAGSQLNFRD-PVLT 210

Query: 250  P--DHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 +LK  ++    F  + L  A+  T  IA R    +    P LP +   +    Q 
Sbjct: 211  DAGPAWLKPPTDAAKPFVQAGLQAAVTQTEAIAARADVTIDFKQPQLPHYQTPD----QT 266

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVA 361
              ++ L          +LA+  +AK +H Q     Y+ RL++EL VI  M F+ YFL+V 
Sbjct: 267  SSKDYL---------TKLAESGLAKRFHGQSIPPAYQDRLEYELRVIIEMGFADYFLVVW 317

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A K NI  G GRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D+D
Sbjct: 318  DVMNYAHKVNIMTGAGRGSAAGSLVSYALAITEVDPIEYNLLFERFLNPARAQMPDIDLD 377

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
               +RR E+I+YV +KYG   +AQIITFG+  AK A+RDV R   +   + +   K IPN
Sbjct: 378  IPDNRRGELIQYVHDKYGKNHMAQIITFGTFGAKQAIRDVARVFGLSQFESNTWSKAIPN 437

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 + L+   + S+  +  +AD   +R+L + +  LEGL RH STHAAGIV+ + PL+
Sbjct: 438  --LFHIDLKTAYEQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLT 495

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
              V + +     L  TQ     +E  GL+K DFLGLK L +L  +  F+ +  G   D  
Sbjct: 496  DTVAL-QPSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGKPFDPK 554

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD  T  L     T G+FQ ESSG++  L  ++P   ED++A+ +LYRPGP++NI 
Sbjct: 555  AIPLDDQPTLALFARGDTNGVFQFESSGIKNVLRKLRPTAFEDVVAVNALYRPGPMENID 614

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RKNG+E I    P +  +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM K
Sbjct: 615  TFIARKNGQEPIAYPDPALAKILKPTYGVLVYQEQVMQVANVMGGFSLGEADLLRRAMSK 674

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    +  ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+ +++  A++
Sbjct: 675  KKSSVLAAEQDKFIEGALKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSKVAFWLAYL 734

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYP  F AA M   M+N+ K++ + Q+A+   + ++ P +N     FK+   +I + L
Sbjct: 735  KVHYPAAFFAALMNASMNNLPKLRTYVQEAKARKVGLLGPDINQSNGGFKLSQGKIRFGL 794

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             +IKG+       I  A  + PF  L D   R+D K L     ++   AGA D F  +R 
Sbjct: 795  LSIKGMRRDFVEAIFAARKNGPFRDLRDLLQRLDPKWLKTDYYKAPTLAGAFDQFSNNRA 854

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE----NSSVRFENE 955
            Q L +LD +    +            +  ++ G FS    L   ++E     +S R E E
Sbjct: 855  QTLANLDELINSVK------------LAGNDVGLFS---MLAPKTIEVPEMPASERLEAE 899

Query: 956  QRVLGFYFSGHPLDVYKPI---LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              VLG Y SGHP+D Y P+    R + +   EE      G  + +  +V   ++ +T+ G
Sbjct: 900  AEVLGVYLSGHPVDKYAPLKTQYRLINVSDLEE------GRAVDILLLVRHIKRIRTKTG 953

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + ++   +         FP
Sbjct: 954  KPMAFIDGQDATGNVSLTIFP 974


>gi|199598719|ref|ZP_03212133.1| DNA polymerase III, alpha subunit [Lactobacillus rhamnosus HN001]
 gi|199590407|gb|EDY98499.1| DNA polymerase III, alpha subunit [Lactobacillus rhamnosus HN001]
          Length = 1098

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 347/1041 (33%), Positives = 544/1041 (52%), Gaps = 85/1041 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L +++         A+A+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALPDLIQAAKNRGYSAVALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q++I                     ++++     GY +L++L +++ L  Q     
Sbjct: 62   LLGMQIEI-----------------ADAKLLVIAENNTGYHQLLKLSTQIMLAQQ----- 99

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               L++   +   GL  +T  +S P   A        A+  L T K      LY+ +   
Sbjct: 100  --PLAFADLLPLNGLAAVTLPNS-PFGVAVSERHEDQAQTFLTTLKAKQPSSLYLGVD-- 154

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               + + E  +   A T +LPL+A  N L+    D     V++A+   + ++ +D P +T
Sbjct: 155  ---EEHLEGTLPAFADTVKLPLLALGNVLYRDPTDAFTQKVMVAIEAGSQLNFRD-PVLT 210

Query: 250  P--DHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 +LK  ++    F  + L  A+  T  IA R    +    P LP +   +    Q 
Sbjct: 211  DAGPAWLKPPTDAAKPFVQAGLQAAVTQTEAIAARADVTIDFKQPQLPHYQTPD----QT 266

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVA 361
              ++ L          +LA+  +AK +H Q     Y+ RL++EL VI  M F+ YFL+V 
Sbjct: 267  PSKDYL---------TKLAESGLAKRFHGQSIPPAYQDRLEYELRVIIEMGFADYFLVVW 317

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A K NI  G GRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D+D
Sbjct: 318  DVMNYAHKVNIMTGAGRGSAAGSLVSYALAITEVDPIEYNLLFERFLNPARAQMPDIDLD 377

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
               +RR E+I+YV +KYG   +AQIITFG+  AK A+RDV R   +   + +   K IPN
Sbjct: 378  IPDNRRGELIQYVHDKYGKNHMAQIITFGTFGAKQAIRDVARVFGLSQFESNTWSKAIPN 437

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 + L+   + S+  +  +AD   +R+L + +  LEGL RH STHAAGIV+ + PL+
Sbjct: 438  --LFHIDLKTAYEQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLT 495

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
              V + +     L  TQ     +E  GL+K DFLGLK L +L  +  F+ +  G   D  
Sbjct: 496  DTVAL-QPSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGKPFDPK 554

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD  T  L     T G+FQ ESSG++  L  ++P   ED++A+ +LYRPGP++NI 
Sbjct: 555  AIPLDDQPTLALFARGDTNGVFQFESSGIKNVLRKLRPTAFEDVVAVNALYRPGPMENID 614

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RKNG+E I    P +  +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM K
Sbjct: 615  TFIARKNGQEPIAYPDPALAKILKPTYGVLVYQEQVMQVANVMGGFSLGEADLLRRAMSK 674

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    +  ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+ +++  A++
Sbjct: 675  KKSSVLAAEQDKFIEGALKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSKVAFWLAYL 734

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYP  F AA M   M+N+ K++ + Q+A+   + ++ P +N     FK+   +I + L
Sbjct: 735  KVHYPAAFFAALMNASMNNLPKLRTYVQEAKARKVGLLGPDINQSNGGFKLSQGKIRFGL 794

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             +IKG+       I  A  + PF  L D   R+D K L     ++   AGA D F  +R 
Sbjct: 795  LSIKGMRRDFVEAIFAARKNGPFKDLRDLLQRLDPKWLKTDYYKAPTLAGAFDQFSNNRA 854

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN----SSVRFENE 955
            Q L +LD +    +            +  ++ G FS    L   ++E     +S R E E
Sbjct: 855  QTLANLDELINSVK------------LAGNDVGLFS---MLAPKTIEAPEMPASERLEAE 899

Query: 956  QRVLGFYFSGHPLDVYKPI---LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              VLG Y SGHP+D Y P+    R + +   EE      G  + +  +V   ++ +T+ G
Sbjct: 900  AEVLGVYLSGHPVDKYAPLKTQYRLVNVSDLEE------GRAVDILLLVRHIKRIRTKTG 953

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + ++   +         FP
Sbjct: 954  KPMAFIDGQDATGNVSLTIFP 974


>gi|303237320|ref|ZP_07323890.1| DNA polymerase III, alpha subunit [Prevotella disiens FB035-09AN]
 gi|302482707|gb|EFL45732.1| DNA polymerase III, alpha subunit [Prevotella disiens FB035-09AN]
          Length = 1238

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 368/1106 (33%), Positives = 557/1106 (50%), Gaps = 101/1106 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ-- 68
            ++HL VH+ YS+L+G   +  ++DK   +    +AITD   +F   EFS    +   Q  
Sbjct: 4    YIHLHVHTHYSILDGQSKVPYLVDKAIKNGMKGMAITDHGVMFGIKEFSDYCASINKQRK 63

Query: 69   --------PIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
                    PI GC++ +     +D +K  +       +   +++L     GY+ LI+LVS
Sbjct: 64   KNGEEPFKPIFGCEMYVARRRKEDKVKEMHDN-----SGYHLIVLAKNYTGYKNLIKLVS 118

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            R ++ D      R     L++   EGLI+ T   +G + R       + A++ +  +KK+
Sbjct: 119  RSWV-DGYYYRPRTDREDLEKY-HEGLIVSTACLAGEVPRNIMRGDIEGAKEAVQWYKKV 176

Query: 178  FGDRLYVNLQRHRGYD----RYRESQVVQLAYTHEL---------PLVATNNSLFLSEED 224
            FGD  Y+ LQRH   D      RE+  +Q    H L           + TN+  F  +E 
Sbjct: 177  FGDDFYLELQRHEVKDPTLKANREAFPLQQKVNHVLLQLGKEFGVKCICTNDCHFEDKET 236

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
             EAHD L+ ++    ++   R R +   + K R EM  +F DLPE L NT+EI  +  F 
Sbjct: 237  AEAHDHLLCLSTQEDLNSPTRMRYSKQEWFKTREEMNEVFQDLPEVLSNTIEILEKVEFY 296

Query: 285  LQVHAPILPRFIEKECDDIQKE--------------------------EENELRNKAVAG 318
               + PI+P F   E    ++E                          EE E   K + G
Sbjct: 297  SIDNGPIMPFFPIPENFGTEEEWRKKFTEQQLYDEFTTDEHGENQLSPEEGEAVIKRLGG 356

Query: 319  LE------------VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E             +LA     K Y      D  + + FEL+V+  M F GYFLIV DF
Sbjct: 357  YEKMYRIKFEADYLAKLAHDGAKKLYGDPIPDDVEKAIIFELHVMKTMGFPGYFLIVQDF 416

Query: 364  IQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            I  A+   N+ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF
Sbjct: 417  INAARTELNVMVGPGRGSAAGSVVAYCLGITRIDPLKYDLLFERFLNPDRVNLPDIDTDF 476

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D R +V+++V  KYG E  A IIT+ ++  K +++DV R   +P    + LCK IP  
Sbjct: 477  DDDGRGKVLQWVMEKYGPENCAHIITYSTMATKNSIKDVARVEGLPLDVSNNLCKAIPER 536

Query: 483  PAHPVSL---QAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRP 538
                + +    AIA   R +EA +++   +R  ++ ++ LEG  R    HA G +I   P
Sbjct: 537  LPDGMKMNLKNAIACTPRLQEAEVSEDDRERNTIKYAKMLEGTVRGTGIHACGFIICRNP 596

Query: 539  LSQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
            +S+ VP+      D     +PVTQ++   IE  GLIK DFLGLKTL+ ++++   + Q  
Sbjct: 597  ISEWVPVSTATDPDFPDQKVPVTQYDGHVIETTGLIKMDFLGLKTLSEIKEACKVIKQTT 656

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G  VD+  IP DD  TY L     T+G FQ ES GM++ L  + P   ED+IA+ +LYRP
Sbjct: 657  GDIVDIDNIPIDDELTYQLYQKGQTIGTFQFESPGMQKYLRELHPTVFEDLIAMNALYRP 716

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP+D I  +  RK+    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+D 
Sbjct: 717  GPMDYIPDFIKRKHDPSLVTYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESDA 776

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LR+AMGKK K  +D+ K +F+    +NG    I   I+    KFA Y FNKSHA  Y+ +
Sbjct: 777  LRKAMGKKKKAIVDQMKPKFLKQGQENGHDPKILEKIWTDWEKFASYAFNKSHATCYSWV 836

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG- 831
            +YQTA++K HYP EF+AA MT     + +I K  ++ +   I  + P VN   + F V  
Sbjct: 837  AYQTAYLKAHYPAEFMAALMTRRFSQITEITKLMEECKSLKISTLGPDVNESMMGFGVNK 896

Query: 832  DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I + L+AIKG+GT  A  I+ E   + P+ S+ DF  R+D   +NR+  ESL ++G 
Sbjct: 897  KGEIRFGLSAIKGMGTGAAIAIVKEREKNGPYKSIYDFAERIDLSNVNRKAFESLAYSGG 956

Query: 891  LDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
             D F   R             LD + +YAQ  ++ + +   ++F  +      +    K 
Sbjct: 957  FDSFELQREDYFSVTSKGVMFLDALVRYAQLYQQEKASMQNSLFGGDDEVEIARPVAAKN 1016

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-----SVATI-RGNNIRL 997
                S  +   E+ ++G Y S HPLD Y  IL  +     EE      +A + +   I  
Sbjct: 1017 ERWPSIEKLNKERELVGIYLSAHPLDEYSVILNHLCNTHTEEIGRGADLAELSKREEISF 1076

Query: 998  AAMVVSKQQKKTRK-GSRIGWVTFSE 1022
              ++ +  ++ ++K G   G+VT  +
Sbjct: 1077 GGIITAVNERFSQKTGKPFGFVTIED 1102


>gi|260101642|ref|ZP_05751879.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            helveticus DSM 20075]
 gi|260084543|gb|EEW68663.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            helveticus DSM 20075]
          Length = 1041

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 341/1028 (33%), Positives = 551/1028 (53%), Gaps = 52/1028 (5%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    ++++++        A+ + D N  +  + F + A  AGI+P++G 
Sbjct: 12   LQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLADVNVTYGLVNFYELAKKAGIKPLLGM 71

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQGKQSVRIC 132
            QL ++          G         ++    T  GY  L+ L S + +L D G+ +  + 
Sbjct: 72   QLRLN----------GLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLT 121

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +   + L+++   +   +  + F  + Q+    +   K+L  D LY+ +  +   
Sbjct: 122  LKDLSKYLADLLLIVPANTKSEL-LSLFETNKQLGSDLIRDLKELTSD-LYLGVYANPSM 179

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD- 251
              Y +  V  L+   +LPL+AT +S +L+  D      L A+A    + Q   P    + 
Sbjct: 180  QNYIDY-VRSLSKQFDLPLLATEDSEYLNPHDQFLQKTLRAIATGDKI-QDALPLAKQEG 237

Query: 252  -HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             HYL    +++  +   DL +A+ NT ++A +C+  +    P+LP++ +K+        E
Sbjct: 238  SHYLVEAEQLLQRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKF----VTSE 293

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L   A  GL+ R  Q  I       +Y++RL++EL VI +M F  YFLIV D I +  
Sbjct: 294  EYLHYLAQTGLQQRFGQNKIPA-----EYQKRLNYELRVINQMGFDDYFLIVWDVINYCH 348

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS  GS+ +Y+L IT++DP+ ++LLFERFLNP R  MPD D+D    +RD
Sbjct: 349  RVQITTGPGRGSACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRD 408

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   ++ +    IP      ++
Sbjct: 409  TVIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWVDAIPYSKGK-IT 467

Query: 489  LQAIADDSRFREARL---ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            L+     SR  E RL   A P    L + +  LEGL RH S HAAG+VI D  ++ +  +
Sbjct: 468  LKEAYQQSR--ELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGL 525

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                   +PVTQ   K++E  GL+K DFLGL+ LT+L   L+ + Q+G+K+D + IP +D
Sbjct: 526  QAGPLG-IPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLIRQQGIKIDPNQIPLND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L     T  +FQ ES G+RQ L  + PD  ED++A+ +LYRPGP+ NI  +  RK
Sbjct: 585  AQTLQLFQQGKTDAVFQFESGGIRQVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVRRK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ +
Sbjct: 645  NGQEAVRYPDPSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVI 704

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +++K +FI+G  K G +K +A  +++ + +FA+YGFN+SHA AY  I+Y  A++K HYP 
Sbjct: 705  EQEKGKFIAGTIKQGHTKAVAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPA 764

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  A +        K + +   A++ NI+I+PP +N   +++ + + +I   L AIKG+
Sbjct: 765  AFYTAMLNSAAG--AKAQDYIMQAQEANIKILPPDINHSSLEYALKNKQILVGLKAIKGL 822

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                AR I  A   KP+ SL DF  R+D K L    +++L+ AGA D    +R +LL + 
Sbjct: 823  RVDFAREI--ADNTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNC 880

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D I    Q   +N +       +   G    K   E    E +++    E++VLGF  + 
Sbjct: 881  DEIIANVQLTGQNIS------LSEILGNAPLKPADEPTGAEKAAM----EEKVLGFSTTT 930

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             PL   +   +K   +   +      G  +     ++  +Q +T+ G  + + +F++ + 
Sbjct: 931  SPLIAVQKFAQKFNSRPLNQFQLNESGVGV---GKLIRFKQIRTKNGKNMAFASFADTSG 987

Query: 1026 EYEANFFP 1033
            E E   FP
Sbjct: 988  EQEVVIFP 995


>gi|302561148|ref|ZP_07313490.1| DNA polymerase III, alpha subunit [Streptomyces griseoflavus Tu4000]
 gi|302478766|gb|EFL41859.1| DNA polymerase III, alpha subunit [Streptomyces griseoflavus Tu4000]
          Length = 1179

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 357/1069 (33%), Positives = 561/1069 (52%), Gaps = 58/1069 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VH+ YSLL+GA  L ++ D         IA++D  NL  A +F   A  AG+ 
Sbjct: 4    PPFTHLHVHTQYSLLDGAARLKDMFDACNEMGMSHIAMSDHGNLHGAYDFFHSAQKAGVT 63

Query: 69   PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVS 117
            PIIG +  +  + + N +    G+ P      +          +    + G   L  L S
Sbjct: 64   PIIGIEAYVAPESRRNKRKIQWGQ-PHQKRDDVSGSGGYTHKTMWAVNSTGLHNLFRLSS 122

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              Y     ++  R+    + +  +EG++  TG  SG +           A K    ++ +
Sbjct: 123  DAYAEGWLQKWPRMDKETIAQW-SEGIVASTGCPSGEVQTRLRLGHFDEALKAAADYQDI 181

Query: 178  FG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            FG DR ++ L  H G D   R R+  ++++     +P + TN+S +    +  AHD L+ 
Sbjct: 182  FGKDRYFLELMDH-GIDIEHRVRDG-LLEIGRKLGIPPLVTNDSHYTYAHEAVAHDALLC 239

Query: 234  VAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +     +S  DR +     +YLK+  EM +I  D  +A +      R  + ++       
Sbjct: 240  IQTGKNLSDPDRFKFDGTGYYLKSTDEMYAI--DSSDAWQQGCANTRLIAEMVDTTGMFE 297

Query: 293  PRFIEKECDDIQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             R +  + D  Q   E +  + +   G+E R   G        +D +++ D+E++VI +M
Sbjct: 298  KRDLMPKFDIPQGYTEVSWFKEEVRRGMERRFPGGV------PEDRQKQADYEMDVIIQM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+ 
Sbjct: 412  RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPNDP-AHPVSLQAIADDSRFREARLA--------DPSVDRLLEISQKLEGLY 522
             DRL K +P D     + L  I D S  R +           +P V ++++ ++ +EGL 
Sbjct: 472  GDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRAMYENEPDVKKVIDTAKGVEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + A +GV +DL  +P DD +T+ LL    TLG+FQ +   MR  L  M+PD  E
Sbjct: 592  DDAVKMVKANKGVDLDLLSLPLDDPKTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651

Query: 642  DIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            DI A+ +LYRPGP  +D+   Y  RKN  ++I  IH  ++  L+E    T G+I+YQEQV
Sbjct: 652  DISAVSALYRPGPMGMDSHTNYALRKNKLQEITPIHKELEEPLREVLDVTYGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  EE+ K    F +GA KNG S      ++++L  
Sbjct: 712  QKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFTIFQAGARKNGYSDEAIQALWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H+AAY ++SY TA++K ++P E++A  +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAGLLTSVKDDKDKSAVYLNECRRMGIK 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L+A++ VGT     I++   A   + S  D+  +VD
Sbjct: 832  VLPPNVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIKCRRAKGKYTSFPDYLDKVD 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------ 927
            +   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F      
Sbjct: 892  AVVCNKRTTESLIKAGAFDEMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMGEA 951

Query: 928  -AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
             + E G F   +T      + + +    E+ +LG Y S HPL   + +L      G  + 
Sbjct: 952  ESSEPG-FGLDVTFTDDEWDKTYL-LAQEREMLGLYVSDHPLFGLEHVLSDKADAGISQL 1009

Query: 987  VATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G+   + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1010 TGGDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFP 1058


>gi|326440734|ref|ZP_08215468.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC
            27064]
          Length = 1146

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 352/1043 (33%), Positives = 551/1043 (52%), Gaps = 76/1043 (7%)

Query: 44   IAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
            IA+TD  NL  A +F  +A  AGI PIIG +  +  +      N+ K  +         V
Sbjct: 6    IAMTDHGNLHGAYDFFHQAKGAGITPIIGIEAYVAPESR---RNKRKIQWGQPHQKRDDV 62

Query: 104  STAEGY-QRLIELVSRMYLLDQGK-QSVRICLSWLQEI----------GTEGLIMLTGGS 151
            S + GY  + I   +R  L +  +  S      WLQ+            +EGLI  TG  
Sbjct: 63   SGSGGYTHKTIWAANRTGLHNLFRLSSDAYAEGWLQKWPRMDKETIAQWSEGLIASTGCP 122

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHEL 209
            SG +           A K    ++ +FG  R ++ L  H    +R     ++++    ++
Sbjct: 123  SGELQTRLRLGQFDEALKAASEYQDIFGKGRYFLELMDHGIEIERRVRDGLLEIGKKLDI 182

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD-- 266
            P + TN+S +  + +  AHD L+ +     +S  DR R     +YLK+  +M +I S   
Sbjct: 183  PPLVTNDSHYTFDHEAGAHDALLCIQTGKNLSDPDRFRFDGTGYYLKSTDQMYAIDSSDA 242

Query: 267  LPEALENTVEIARRCSFILQVHAP-ILPRF-IEKECDDIQKEEENELRNKAVAGLEVRLA 324
              E   NT+ +A +        A  ++P+F I     ++   +E           EVR  
Sbjct: 243  WQEGCRNTLLVAEQIDTSGMFEAKNLMPKFEIPAGFTEVTWFQE-----------EVRTG 291

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                  G   +D +++ ++E++VI  M F GYFL+VADFI WAKKN I VGPGRGS AGS
Sbjct: 292  MARRYPGGVPEDRQRQAEYEMDVIVSMGFPGYFLVVADFIMWAKKNGIAVGPGRGSAAGS 351

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            + AYA+ ITD+DP+   L+FERFLNP+R+SMPD DIDF + RR EVIRYV  KYG ++VA
Sbjct: 352  IVAYAMGITDLDPIEHGLIFERFLNPERISMPDVDIDFDERRRVEVIRYVTEKYGADKVA 411

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-------------DPAHPVSLQA 491
             I T+G+++AK A++D  R L  PY+  DRL K +P              DPAHP   +A
Sbjct: 412  MIGTYGTIKAKNAIKDSARVLGYPYAMGDRLTKAMPADVLGKGIPLSGILDPAHPRYSEA 471

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                   R     +P V ++++ ++ +EGL R    HAAG+++   P++   P++     
Sbjct: 472  ----GEIRGMYENEPDVKKVIDTARGVEGLVRQMGVHAAGVIMSSEPITDHAPVWVRHSD 527

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYH 610
             + +TQ++    E  GL+K DFLGL+ LT++  ++  + A +G+++++  IP DD  TY 
Sbjct: 528  GVTITQWDYPSCESLGLLKMDFLGLRNLTIMDDAVKMVKANKGIELEMLSIPLDDPTTYE 587

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGK 668
            LL    TLG+FQ +   MR  L  M+PD  EDI A+ +LYRPGP  +++   Y  RKN +
Sbjct: 588  LLCRGDTLGVFQFDGGPMRSLLRLMKPDNFEDISAVSALYRPGPMGMNSHTNYALRKNKQ 647

Query: 669  EKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++I  IHP ++  LKE    T G+I+YQEQV + AQ+++GYSL EAD+LRR MGKK  EE
Sbjct: 648  QEITPIHPELEEPLKEVLDVTYGLIVYQEQVQKAAQIIAGYSLGEADILRRVMGKKKPEE 707

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + K    F +GA KNG S      ++++L  FA Y FNK+H++AY +++Y TA++K ++P
Sbjct: 708  LAKNFTIFQAGARKNGYSDEAVQALWDVLVPFAGYAFNKAHSSAYGLVTYWTAYLKANHP 767

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIK 843
             E++AA +T   D+ +K   +  + R+  I+++PP+VN    +F   GD+ I + L+A++
Sbjct: 768  AEYMAALLTSVKDDKDKSAVYLNECRRMGIKVLPPNVNESQSNFAAQGDDVILFGLSAVR 827

Query: 844  GVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VGT     I+     K  + S  DF  +V+    N+R +ESL+ AGA D  G++R  L+
Sbjct: 828  NVGTNVVESIIRCRKSKGKYSSFPDFLDKVEVVVCNKRTVESLIKAGAFDELGHTRKGLV 887

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQ 956
               + +      V++       ++F       +D+       VE S V +E       E+
Sbjct: 888  AHHEPMIDNVVAVKRKEAEGQFDLFGGMGDDSADEPGF-GLDVEFSDVEWEKSYLLAQER 946

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN------IRLAAMVVSKQQKKTR 1010
             +LG Y S HPL   + +L        + S++ + G        + +  ++   Q+K T+
Sbjct: 947  EMLGLYVSDHPLFGIEHVLSDKS----DASISQLTGGEHADGAVVTIGGIISGLQRKMTK 1002

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
            +G+     T  + A   E  FFP
Sbjct: 1003 QGNAWAIATVEDLAGSIECMFFP 1025


>gi|297562140|ref|YP_003681114.1| DNA polymerase III subunit alpha [Nocardiopsis dassonvillei subsp.
            dassonvillei DSM 43111]
 gi|296846588|gb|ADH68608.1| DNA polymerase III, alpha subunit [Nocardiopsis dassonvillei subsp.
            dassonvillei DSM 43111]
          Length = 1186

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 355/1083 (32%), Positives = 566/1083 (52%), Gaps = 81/1083 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YS+L+GA  L  +  + A    PA+A+TD  N+F A EF Q++   G+ P
Sbjct: 4    SFAHLHVHTEYSMLDGAAKLKPLFKEAARLGMPAVAMTDHGNMFGAYEFYQQSKGTGVTP 63

Query: 70   IIGCQLDIDMQDNL--KMTNQGKTPFPTVPS---------------IVLLVSTAEGYQRL 112
            IIG +  +  +     K    G++      S               + +L    +G + L
Sbjct: 64   IIGIEAYVAPESRFHKKRVFWGRSSGSDDASAEGGKDISGGGRYLHMTMLAQNEKGLRNL 123

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
              + S +  ++      R+ L  + E  +EG+I+ TG  SG +         + A     
Sbjct: 124  FRM-SSLASMEGYYMKPRMDLELMSEY-SEGIIVSTGCPSGGVQTRLRLGQEKEAVAYAA 181

Query: 173  TFKKLFG-DRLYVNLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              + +FG + +++ L  H G    +E +  ++++    ++P + TN+S ++ E    AHD
Sbjct: 182  GLQDIFGKENVFLELMDH-GVPIEKEVRDGLLRVGRELDIPPLVTNDSHYVYESQASAHD 240

Query: 230  VLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSI--FSDLPEALENTVEIARRCSF--- 283
             L+AV     +    R R     +YLK+  EM  I  F +  +   NT+ +A R      
Sbjct: 241  ALLAVGVGKNLDDPTRFRFNGSGYYLKSAEEMRGILNFEEWEQGCRNTLLVAERIDPGAY 300

Query: 284  -ILQVHAPILPRFI----EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
              +  H  ++P F     E +   + KE E  L  +   G+      G I         R
Sbjct: 301  DAVFAHRDLMPVFPVPEGETQASWLAKEVERLLPTRYPDGI-----NGEI---------R 346

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            QR+DFEL +I  M F  YFL+VAD  Q+A+KN I +GPGRGS AGS+ AY L ITD+DPL
Sbjct: 347  QRVDFELGIINEMGFPAYFLVVADICQYARKNGIALGPGRGSAAGSMIAYVLGITDLDPL 406

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               LLFERFLNP+R++MPD D+DF + RR E+I YV   YG ERVAQI+TFG+++AKAA+
Sbjct: 407  EHGLLFERFLNPERVTMPDVDLDFDERRRGEMIEYVTRLYGAERVAQILTFGTIKAKAAV 466

Query: 459  RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDSRFREARLA--------DPSVD 509
            +D  R L MPYS  D++ K  P       + L+A+ +    R             D  V 
Sbjct: 467  KDSTRILGMPYSVGDQITKAFPAAVGGKEIPLEAVTNTEHERYGETTELRNLIDNDAQVA 526

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            +++E ++ +EGL R    HAAG+++   PL  ++P+++       +T F     E  GL+
Sbjct: 527  KVMETARGIEGLTRGTGVHAAGVILSKEPLLDVIPLHKRDTDGAIITGFPYPQCEDMGLL 586

Query: 570  KFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGL+ LT++  ++  + +  G+ +DL  +P DD +TY LL+   TLG+FQL+   M
Sbjct: 587  KMDFLGLRNLTIMDDAVKSIKEAEGIDIDLGKLPLDDRKTYQLLSRGDTLGVFQLDGGAM 646

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPML 682
            R  L+ M+P    DI A++SLYRPGP+  +    Y +R NG++++  IHP     ++P+L
Sbjct: 647  RNLLKRMEPKKFGDIAAVLSLYRPGPMAANAHNDYADRSNGRQEVTPIHPELKDALEPIL 706

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
             ET  +++YQEQ+M IAQ L+GY+L  AD++RRAMGKK KE +++++ +F  GA   G S
Sbjct: 707  GETFHLLVYQEQIMAIAQQLAGYTLGGADLMRRAMGKKKKEALEEEEAKFFPGAEARGFS 766

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
            K     +++++  FA Y FNKSHAA YA++SY TA++K ++P  ++AA +T   D+ +K+
Sbjct: 767  KEATQALWDVMLPFAGYAFNKSHAAGYALVSYWTAYLKANHPAAYMAALLTSVSDDKDKM 826

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-P 861
              +  + R   I+++PP VN   + F      I + + A++ VG      I+    +K  
Sbjct: 827  AVYLAECRTQGIKVLPPDVNESGLRFTPVGKDIRFGMGAVRNVGANVVNSIIRTRTEKGK 886

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F S  DF S+++    N+RV+ESL+ AG  D  G  R +L +  +         +K   +
Sbjct: 887  FSSFTDFLSKIELAACNKRVIESLIKAGGFDSLGQPRRELYRHHETAVDGMISSKKQEAH 946

Query: 922  KHENIFAHEKGTFSDKITLE-KFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
               ++F       S  I L   +  E  +   +   E+ +LG Y S HPL   + +L   
Sbjct: 947  GQFDLFGGGDDGDSTPIGLNINWGDEEWDRKTKLAFEREMLGLYVSSHPLAGAERVL--- 1003

Query: 979  GIKGYEESVATI--------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
              +  + S+A I        RG  +R++ ++    ++  + G++    T  +     E  
Sbjct: 1004 -ARSRDTSIAQIVAGEMARERG-EVRISGLISKVDKRTNKAGNQWAIATVEDLDASMEVL 1061

Query: 1031 FFP 1033
            FFP
Sbjct: 1062 FFP 1064


>gi|29832685|ref|NP_827319.1| DNA polymerase III subunit alpha [Streptomyces avermitilis MA-4680]
 gi|29609805|dbj|BAC73854.1| putative DNA polymerase III alpha subunit [Streptomyces avermitilis
            MA-4680]
          Length = 1179

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 361/1069 (33%), Positives = 559/1069 (52%), Gaps = 58/1069 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VH+ YSLL+GA  L ++ +         IA++D  NL  A +F   A  AG+ 
Sbjct: 4    PPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHTAKKAGVT 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY-QRLIELVSRMYLLDQGK- 126
            PIIG +  +  +      N+ K  +         VS + GY  + I   +R  L +  K 
Sbjct: 64   PIIGIEAYVAPESR---RNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANRTGLHNLFKL 120

Query: 127  QSVRICLSWLQEI----------GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
             S      WLQ+            +EGLI  TG  SG +           A K    +++
Sbjct: 121  SSDAYAEGWLQKWPRMDKETISQWSEGLIASTGCPSGELQTRLRLGQFDEALKSAAEYQE 180

Query: 177  LFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            +FG DR ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+ +
Sbjct: 181  IFGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYANEATAHDALLCI 240

Query: 235  AHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAP- 290
                 +S  DR R     +YLK+  EM +I S     E   NT+ +A +        A  
Sbjct: 241  QTGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCANTLLVAEQIDTSGMFEAKN 300

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            ++P+F   E        + E+R     G+E R   G         D +++ ++E++VI +
Sbjct: 301  LMPKFDIPEGFTEVTWFQEEVRR----GMERRFPGGV------PDDRQKQAEYEMDVIIQ 350

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F GYFL+VADFI WAKK  I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP
Sbjct: 351  MGFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNP 410

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+
Sbjct: 411  ERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYA 470

Query: 471  QVDRLCKLIPNDP-AHPVSLQAIADDS--RFREARLA------DPSVDRLLEISQKLEGL 521
              DRL K +P D     + L  I D S  R+ EA         +P V ++++ ++ +EGL
Sbjct: 471  MGDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRAMYENEPDVKKVIDTAKGVEGL 530

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ LT+
Sbjct: 531  VRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTI 590

Query: 582  LQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  ++  + + +G+ +DL  +P DD +T+ LL    TLG+FQ +   MR  L  M+PD  
Sbjct: 591  MDDAVKMVKSNKGIDLDLLSLPLDDPKTFELLQRGETLGVFQFDGGPMRSLLRLMKPDNF 650

Query: 641  EDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQ 694
            EDI A+ +LYRPGP  +D+   Y  RKNG ++I  IH  ++  L+E    T G+I+YQEQ
Sbjct: 651  EDISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHKELEEPLQEVLAVTYGLIVYQEQ 710

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            V + AQ+++GYSL EAD+LRR MGKK  +E+ K    F  GA K G S      ++++L 
Sbjct: 711  VQKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFVLFQEGAQKKGYSDEAIQALWDVLV 770

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNK+H+AAY ++SY TA++K +YP E++A  +T   D+ +K   +  + R+  I
Sbjct: 771  PFAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAGLLTSVKDDKDKSAVYLNECRRMGI 830

Query: 815  QIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRV 872
            +++PP VN    +F   GD+ I + L+A++ VGT     I+++  A   + S  D+  +V
Sbjct: 831  KVLPPDVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIKSRKAKGKYASFPDYLDKV 890

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---- 928
            ++   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F     
Sbjct: 891  EAVACNKRTTESLIKAGAFDTMGHTRKGLTAQFEPMIDNVVQVKRKEAEGQFDLFGGMGE 950

Query: 929  --HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
               ++  F   +       E + +    E+ +LG Y S HPL   + +L      G  + 
Sbjct: 951  EESDEPGFGLDVVFTDDEWEKTYL-LAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQL 1009

Query: 987  VAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1010 TGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFP 1058


>gi|18251957|gb|AAL66178.1|AF459434_1 DNA polymerase III alpha subunit [Saccharomonospora phage PIS 136]
          Length = 1206

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 364/1082 (33%), Positives = 562/1082 (51%), Gaps = 84/1082 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ +S+L+GA  +  + D+      PA+A+TD  N+F A EF Q++   GI+P
Sbjct: 68   SFVHLHVHTEFSMLDGAAKMKPLFDEATRLGMPAVAMTDHGNMFGAYEFFQQSKKTGIKP 127

Query: 70   IIGCQLDIDMQDNLKMT--------NQGKTPFP---------TVPSIVLLVSTAEGYQRL 112
            IIG +  +  +               +G   F              + +L   A G + L
Sbjct: 128  IIGIEAYVAPESRHHKKPVFWGHHGQRGADEFGEGGDVSGAGAYTHMTMLARNATGLRNL 187

Query: 113  IEL-VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
             +L  SR +     K   R+    + E   EG+I  TG  SG +         + A +  
Sbjct: 188  FKLSYSRAWRATTAKP--RMDRDLIAE-HAEGIIATTGCPSGEVQTRLRLGQPKEALQAA 244

Query: 172  LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              F+ +FG +  ++ L  H    +R     ++ +A    L  VATN+S +++++  +AH 
Sbjct: 245  SDFRDIFGPENFFLELMDHGLPIERSVREGLLDIAKQLGLRPVATNDSHYVTQDQADAHS 304

Query: 230  VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQV 287
             L+ V     ++  +R +   D +YLK+ +EM + + +++P A +NT+ IA        V
Sbjct: 305  ALLCVQSGKTLNDPNRFKFDGDGYYLKSAAEMRAYWDTEVPGAADNTLLIASMVESYDDV 364

Query: 288  HAP--------ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
             AP        I+P           K +E  LR +    +  R   G        Q YR 
Sbjct: 365  FAPTNRMPQAKIVP----------GKTDEQVLREEIEQFIPTRFPDGM------PQKYRD 408

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            +L++EL VI    ++ YFL+V D ++WAK N I VGPGRGS AG++ +Y L I DIDPL+
Sbjct: 409  QLEWELEVIIGKGYASYFLVVGDLVRWAKNNGIRVGPGRGSAAGALLSYILHIIDIDPLK 468

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              L+FERFLNP+R S PD DIDF + RRDEVI Y +NKYG E  A++IT+G+++ KAA +
Sbjct: 469  HGLIFERFLNPERESPPDIDIDFDERRRDEVIEYAKNKYGSEYFAKVITYGTIKTKAAFK 528

Query: 460  DVGRAL--QMPYSQVDRLCKLIPND-PAHPVSLQAIADDSRFREARLA--------DPSV 508
            D  R    Q  +S  DR  K +P    A  + L  I D    R A  A        DP V
Sbjct: 529  DAARVHLGQAGFSVADRFSKALPPPVAAKDIPLSGIMDPEHERYAEAAEVRSLIESDPEV 588

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP-VTQFNMKWIEKAG 567
             ++ + ++ LEGL R+A  HA   +I   PL  ++P+++  R D   +T ++    E  G
Sbjct: 589  SKIFDTARGLEGLIRNAGVHACAHIISREPLLDVLPLWQ--REDGAIITGWDGPQCEGVG 646

Query: 568  LIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K D LGL  +T +  +   + A  GV++D   +P DD  T+ +L    +LG+FQLE  
Sbjct: 647  LLKIDILGLVNMTTIDDTARMVKANHGVEIDPLALPMDDATTFDMLGRGESLGVFQLEGG 706

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM-- 681
            GM+  L+ MQP   EDI+A V+LYRPGP  +D  + Y +RKNG++K+  IHP L +P+  
Sbjct: 707  GMQALLKRMQPTTFEDIVACVALYRPGPMDVDAHLHYADRKNGRQKVSPIHPELEEPLAE 766

Query: 682  -LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
             L ET G+I+YQEQ+MQIAQ ++ Y+L +AD LRRAMGKK KE ++K+   F  G   NG
Sbjct: 767  ILSETYGLIVYQEQIMQIAQKVANYTLGQADTLRRAMGKKKKEVLEKEFAVFEEGMKANG 826

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             S      +++ +  FA Y FNKSHAAAY +I+Y TA++K +YP E++AA +T   D  +
Sbjct: 827  FSGEAIKALWDTILPFAGYAFNKSHAAAYGLITYWTAYLKANYPAEYMAALLTANADKKD 886

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASAD 859
            K   +  + R+  ++++PP VN   V F   D  I + L AI+ VG   A  I+ +   +
Sbjct: 887  KSAVYLAECRRMGLKVLPPDVNDSAVQFSATDGNIRFGLGAIRNVGAGVAETIIRDREKE 946

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
              F    DF ++      ++RV+ESL+ AGA D  G++R  L    ++  +    ++K +
Sbjct: 947  GRFTGFADFLTKASPSVCSKRVVESLIKAGAFDDLGHTRKALFIVHEDAVEVMSALKKQQ 1006

Query: 920  TNKHENIFAHEKGTFSDKITLE--KFSVEN--SSVRFENEQRVLGFYFSGHPLDVYKPIL 975
                 ++F        +   L   K+  E     +    E+ +LG Y + HPLD  + +L
Sbjct: 1007 AAGQFDLFGAAPQPMEESSPLAHLKYDPEEWPPKILLSFEREMLGLYVTAHPLDGAEHLL 1066

Query: 976  RKMGIKGYEESVATI-----RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            RK   K     +AT+     +   I ++ +V S +++  +KG      T  +     E  
Sbjct: 1067 RKWAPK----PIATLVHDAPKEGEITISGLVTSVERRLNKKGEPWAICTIEDLDASIEVL 1122

Query: 1031 FF 1032
            FF
Sbjct: 1123 FF 1124


>gi|297153520|gb|ADI03232.1| DNA polymerase III subunit alpha [Streptomyces bingchenggensis BCW-1]
          Length = 1233

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 358/1090 (32%), Positives = 572/1090 (52%), Gaps = 84/1090 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-AGIQ 68
            SFVHL  H+ YS+L+GA  L  +  ++A    PAIA++D  N+F A EF+Q A    GI+
Sbjct: 39   SFVHLHNHTEYSMLDGAQKLKPMFGEVARQGMPAIAMSDHGNMFGAYEFAQVAKGFEGIK 98

Query: 69   PIIGCQLDI-----------------------DMQDNLKMTNQGKTPFPTVPSIVLLVST 105
            PIIG +  +                       D + +  ++  G+        + +    
Sbjct: 99   PIIGIEAYVAPSSRFVRKQEFWGPGGRRATSADGEGSKDVSGGGR-----FTHLTMWARN 153

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
            ++G + L  L ++     Q           L     +G+I  TG  SG +      N   
Sbjct: 154  SQGLRNLFWLSTQASYEGQFPAGKPRMDRELIADRPDGIIATTGCPSGEVQTRLRLNQYA 213

Query: 166  VAEKRLLTFKKLFG-DRLYVNLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSE 222
             A+     ++++FG +  ++ L  H G D  RE +  +++LA    +PL+ATN++ +++E
Sbjct: 214  EAKAAAAAYQEIFGRENYFLELMDH-GLDIEREVREGLLRLATELNIPLLATNDAHYVTE 272

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            +  +AHD L+ +    V   KD P         +YLK  +EM S+FS+LPEA +NT+ IA
Sbjct: 273  DQADAHDSLLCIG---VGKNKDDPGRFRFNGSGYYLKTAAEMRSLFSELPEACDNTLLIA 329

Query: 279  RRCSFILQV--HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
             R     +V  +   +PRF      + Q   E+ LR + + GL +R            Q 
Sbjct: 330  ERIESYDEVFDYVDEMPRFPGVPEGETQ---ESWLRKEVLEGLAMRYGAPV------PQH 380

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R + E++VI  M FS YFL+VAD  + A++N IP+GPGRGS  GS+ AYA  IT++ 
Sbjct: 381  ILDRFETEMSVIGPMGFSSYFLVVADICRHARENKIPLGPGRGSCTGSIVAYATRITELC 440

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            PL   LLFERFLNP+R++ PD D+DF   +RD ++RYV  KYG E  A + TFG ++AK 
Sbjct: 441  PLEHGLLFERFLNPERINPPDVDLDFDDRQRDRMVRYVTEKYGEEYTAMVNTFGKIKAKN 500

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDS--RFREA----RLADPSVD 509
            A++D  R L  PYS  +R+ K +P D       L A+ D S  R+ EA    ++ D   D
Sbjct: 501  AIKDSSRILGYPYSHGERITKALPPDQNGKSAPLAAVFDSSHERYGEAGEIRQMYDNEQD 560

Query: 510  --RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
              R+++ ++ +EGL R    HAA +++    L+  +P++      + +T F+    E  G
Sbjct: 561  VKRVIDTARGVEGLTRGTGVHAAAVILSKTKLTDRIPLHMRASDGVKITGFDYPSCEAMG 620

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV----------DLSLIPFDDHETYHLLTTKG 616
            LIK DFLGL+ L ++ ++++ + + RG  +             +IP DD  TY LL    
Sbjct: 621  LIKMDFLGLRNLGVIDQAIENIRENRGTSLATVDPLDGDPSTVVIPLDDATTYRLLAEGN 680

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSI 674
            T G+FQL+  GMR  L+ M+P   EDI A+ +LYRPGP+  +    Y +RK G+++I  I
Sbjct: 681  TFGVFQLDGGGMRVLLKQMEPTRFEDIAAVNALYRPGPMAANAHTNYAHRKTGRQEITPI 740

Query: 675  HP----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            HP     ++P+L  T  +++YQEQ+M IA+ L+GY+L  AD+LRRAMGKK  E +  + +
Sbjct: 741  HPELRDALEPILGNTFHLLVYQEQIMAIARELAGYTLGGADLLRRAMGKKKPEVLAAEWD 800

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            +F SG   NG  +     +++++  F+ Y FNKSH A Y ++SY TA++K +YP E++AA
Sbjct: 801  KFHSGMRGNGYGEEAIKALWDVMLPFSGYAFNKSHTAGYGLVSYWTAYLKANYPAEYMAA 860

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +T   D+ +K   +  DAR+  ++++ P VN    +F    + + + L +++ VG    
Sbjct: 861  LLTSVGDDKDKAAIYLADARKNGVRVLQPDVNESVAEFTAVGDDVRFGLRSVRNVGDNVI 920

Query: 851  RHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              +++A   K  F S  DF  +VD   LN+R  ESL+ AG  D  G+SR  L    ++  
Sbjct: 921  EAVIDARRRKGKFSSFADFLDKVDLPALNKRAAESLIKAGTFDSLGHSRKGLTAIHEDAI 980

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLE-KFSVENSSVR----FENEQRVLGFYFS 964
                 V+K  +   +++FA   G  S +      F V+++          E+ +LG Y S
Sbjct: 981  DAIIPVKKAASFGQDDLFADLGGEGSSEPAFGLDFPVDDTEWPRRQLLATEREMLGLYVS 1040

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
             HPLD  + IL +       E +A+ R   +++L+ ++   Q K T++G+    V  ++ 
Sbjct: 1041 AHPLDGAEHILSRARDCSIAELLASGRTTGDVQLSGLITGIQLKMTKQGNAWAIVNLADR 1100

Query: 1024 AKEYEANFFP 1033
                E  FFP
Sbjct: 1101 DAGIEVLFFP 1110


>gi|289642708|ref|ZP_06474847.1| DNA polymerase III, alpha subunit [Frankia symbiont of Datisca
            glomerata]
 gi|289507451|gb|EFD28411.1| DNA polymerase III, alpha subunit [Frankia symbiont of Datisca
            glomerata]
          Length = 1187

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 346/1077 (32%), Positives = 571/1077 (53%), Gaps = 60/1077 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  SFVHL VH+ YS+L+GA  +  +  + A    PA+ +TD  N+F + EF Q A  
Sbjct: 1    MSKGDSFVHLHVHTEYSMLDGAAKVGLLFAEAARLGMPAVGMTDHGNMFGSYEFHQAAKK 60

Query: 65   AGIQPIIGCQLDI--DMQDNLKMTNQGK---------------TPFPTVPSIVLLVSTAE 107
            AG++PIIG +  +  + + + K    G                +       + +L + ++
Sbjct: 61   AGVKPIIGIEAYVAPEARHHKKPVFWGDGGQRDADPDGEGGDVSGGGAYTHMTMLAANSK 120

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G + L  L S +  LD   +  R+    + E   EG+I  TG  SG +      N    A
Sbjct: 121  GLRNLFRL-SSIASLDGYYRKPRMDQELIAE-HAEGIIATTGCPSGVVQTRLRLNQFDRA 178

Query: 168  EKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
             +   T++ +FG +  ++ L  H    +R     ++ +A   +L  +ATN+S +++++  
Sbjct: 179  VEAAATYRDIFGPENYFLELMDHGLAIERKVRDGLLDIARRLDLRPLATNDSHYVTKDQA 238

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSF 283
            ++H  L+ V     +    R R   D +YLK+  EM  ++   +P A ++++ IA R   
Sbjct: 239  DSHSALLCVGTGKRLDDPKRFRFDGDGYYLKSPEEMRDMWDGQVPGACDSSLLIAERVQP 298

Query: 284  ILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
               V A +  +PRF   E +D    + + LR +   G+E R            Q+   R+
Sbjct: 299  YDDVFAYVDRMPRFPVPEGED----QLSWLRKEVARGVEHRFGANP------PQEVLDRV 348

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            ++E+ VIA M F  YFL+VAD  ++A++  I VGPGRGS  GS+ +Y L +T++DP+   
Sbjct: 349  EYEIGVIANMGFPAYFLVVADICRYAREKGIRVGPGRGSATGSMVSYVLGVTELDPIEHR 408

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            L+FERFLNP+R++ PD D+DF + RR ++IRYV  +YG +RV QI+TFG+++AKAA++D 
Sbjct: 409  LIFERFLNPERITPPDIDLDFDERRRGDMIRYVTERYGEDRVCQILTFGTIKAKAAIKDS 468

Query: 462  GRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSRFREARLA--------DPSVDRLL 512
             R L  PY+  D++ K +P D     + L  I D +  R +  A        D  V +++
Sbjct: 469  CRVLGYPYALGDKITKAMPPDVFGKGIPLSGILDPAHERYSEAAEVRGLYESDQDVRKIV 528

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            + ++ LEGL R    HAAG+++   PL  ++P++R       +T F     E  GL+K D
Sbjct: 529  DTARGLEGLTRGTGVHAAGVILCSEPLLDVLPIHRRDADGAIITGFPFPQCEDMGLLKMD 588

Query: 573  FLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGL+ LT++  + ++    RG+ +DL  +P  D  T+ L+    TLG+FQL+   MR  
Sbjct: 589  FLGLRNLTVIDDAIINVRKNRGIDIDLQKLPLADTPTFQLMARGDTLGVFQLDGGPMRSL 648

Query: 632  LEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKET 685
            L  M P   EDI A+++LYRPGP+  ++ + Y +RKNG++ +  IH      ++ +L ET
Sbjct: 649  LRLMAPTKFEDIAAVLALYRPGPMAANSHIEYADRKNGRKPVTPIHTELKDRLEDILGET 708

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
              +++YQEQVM IA+ L+GY+L  AD+LRRAMGKK KE +D     F++G ++N  S   
Sbjct: 709  YHLVVYQEQVMTIARELAGYTLGRADLLRRAMGKKKKEVLDANHAEFMAGMAENSYSTEA 768

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A  ++++L  F+ YGFNKSH A Y V+S+ TA++K ++P E++AA +T   D+ +K+  +
Sbjct: 769  AQALWDVLVPFSGYGFNKSHTAGYGVVSFWTAYLKANFPAEYMAALLTSVGDDKDKMAVY 828

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDS 864
              + R+  I+++PP VN   + F   D+ I + L AI+ VG      I  +   K  + S
Sbjct: 829  LAECRKMGIRVLPPDVNESTLYFTPVDDDIRFGLGAIRNVGANVVASIAASRERKGDYAS 888

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              DF  +V+    N+RV++SL+ AGA D  G++R  L Q  ++        ++N      
Sbjct: 889  FPDFLEKVEIAVCNKRVVDSLIKAGAFDSLGHNRRALSQVHESAIDAVIGTKRNEAFGQF 948

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRF------ENEQRVLGFYFSGHPLDVYKPILRKM 978
            ++F        D+       ++ S+  +        E+ +LG Y S HPL+  + IL + 
Sbjct: 949  DLFGGGGDDEPDESMKIGLGLDLSATEWPRSELLAQEREMLGLYVSSHPLEGTQRILDRN 1008

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW--VTFSEPAKEYEANFFP 1033
                  + + + R       A V++K  ++  K +   W  VT  +     E  FFP
Sbjct: 1009 RDTRIIDLLDSGRSEGEVQIAGVIAKIDRRVNKNNGNLWAIVTVEDLDASVEVLFFP 1065


>gi|269216173|ref|ZP_06160027.1| DNA polymerase III, alpha subunit [Slackia exigua ATCC 700122]
 gi|269130432|gb|EEZ61510.1| DNA polymerase III, alpha subunit [Slackia exigua ATCC 700122]
          Length = 1194

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 354/1059 (33%), Positives = 569/1059 (53%), Gaps = 54/1059 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA----- 65
            FVHL  H+ YS+L+GA  + +++ + A    PA+AITD   +    E    ACAA     
Sbjct: 25   FVHLHNHTEYSMLDGATHVKDMVRRAADLDMPAVAITDHGVMCGVPELCD-ACAAVERET 83

Query: 66   --GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
               ++PI GC+  I   ++ ++  + ++P   +  +++L   +EGY  L+ LVS  ++ D
Sbjct: 84   GKKVKPIYGCE--IYFTEDPEVGTKKRSP---LYHMIMLAKNSEGYHNLLHLVSESHM-D 137

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDR 181
                  R  L  +++   +G++  +   +G I R         A +   TFK +F  GD 
Sbjct: 138  NYYYKPRTTLDMIKK-HAKGIVATSACIAGIIPRRLRERDVAGAREWAQTFKDIFEPGD- 195

Query: 182  LYVNLQ-----RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             Y+ LQ        G+ ++    Q+  LA+   L  +ATN+  +L+ ED +A D+++ + 
Sbjct: 196  FYIELQDQGISTEEGFSQHELNVQLSNLAHDLGLETIATNDFHYLTREDAKAQDIMLCIG 255

Query: 236  HSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
              +    ++R R   D  Y+K   EM     D PEA +NTV++A +CS  L+  + ILPR
Sbjct: 256  TGSNYDDENRMRFANDEFYMKTEEEMREALRDFPEACDNTVKVAEKCSVELERDS-ILPR 314

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQ-GAIAKGYHAQ----DYRQRLDFELNVIA 349
            F   E       EE   R +   GL  R    G I      +    D  +R ++E  VI 
Sbjct: 315  FPLPE----GYTEEMLFREECEKGLIHRYGNNGEITTMDELRAARPDVVERYEYEAGVII 370

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +  F  YFLIV ++I+WAK N I VGPGRGS AG++  YA+ ITD++PL   LLFERFL+
Sbjct: 371  QQGFPAYFLIVQEYIRWAKDNGIGVGPGRGSAAGAICTYAMGITDLEPLDNGLLFERFLS 430

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+ MPD D+DF    R +VI +V++ YG + +A +ITFG LQAK A+RD  R L  PY
Sbjct: 431  PERVEMPDIDVDFDDQHRQDVIDHVRDFYGADHIAGVITFGKLQAKNAVRDAARVLGHPY 490

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
               D++CK I ++    +   A+ ++   ++    D     +++ ++ +EG  R    HA
Sbjct: 491  GVGDKICKTIGDELGITLD-DALENNVDLKKMYDDDADTRDIIDAARSIEGNIRGEGVHA 549

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DF 588
               +I   PL   VP+ RD +    +TQ++  +  + GL+K DFLGL+TL +L ++  + 
Sbjct: 550  CATIICRDPLVDHVPVKRDTKGGGMITQYDGHYTPELGLLKMDFLGLRTLGVLSRACKNV 609

Query: 589  LAQRGVKVDLSLIPFDDHETYHLLTTK---GTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             A+ G+++    IP +D E + L+  +   G  G+FQ+E +        + P    DI+A
Sbjct: 610  KARHGLEIRPDEIPIEDAEAFRLMRGEMRWGMDGLFQVEGALYVSLFSRLPPRRFSDIVA 669

Query: 646  LVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
             ++L RPGP+++ +V  Y    NG  +I      + P+L+ET G ++YQEQ+MQI+  +S
Sbjct: 670  SIALNRPGPLESGMVDDYVKVANGTTEIHYYDDRLRPILEETYGTMVYQEQIMQISMAMS 729

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G+S  +AD LR+AMGKK  + M + +  +  GA +NG S  IA  I+E   KFA Y FNK
Sbjct: 730  GFSAGKADRLRKAMGKKKLDIMRQLQADWNEGAVENGYSLEIAKQIWEDAEKFAKYAFNK 789

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA++  +TA++K HYP EF+AA ++  M N +++ K+        I ++PP VNT
Sbjct: 790  SHSAAYALLVMRTAYLKAHYPYEFMAAVLSSYMGNADRLIKYISSCTHSGIPVLPPDVNT 849

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVL 882
              ++F   +  I + LA ++G+G   A+ I+ E  A+ P+ SL DF +R+D+K  NR+ L
Sbjct: 850  SNLEFTPLEEGIRFGLAGVRGIGEAVAQSIIDEREANGPYSSLHDFVNRLDAKCYNRKTL 909

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIF-----AHEKGTFS 935
            E+LV +GA D  GY+R QL+  +D+  + + A   +K+R     ++F       + G F 
Sbjct: 910  EALVKSGAFDSTGYTRKQLMHFIDDTPLLESAAKRQKDRDAGQVSMFDLFADVPDSG-FD 968

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-- 993
            D +        +  +    E+ +L  Y S HPL  Y+  L  +  K +   +A  +G+  
Sbjct: 969  DDVPAPDGIEWDKRMLLAYEKEILKIYVSDHPLRPYERSLESV-TKYHLGDLAEHKGDIK 1027

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            N   A +V S   K TRKG+++      +     E   F
Sbjct: 1028 NAVFAGLVASVTVKMTRKGTKMANFDLEDTTGHMECVCF 1066


>gi|307565570|ref|ZP_07628050.1| DNA polymerase III, alpha subunit [Prevotella amnii CRIS 21A-A]
 gi|307345729|gb|EFN91086.1| DNA polymerase III, alpha subunit [Prevotella amnii CRIS 21A-A]
          Length = 1241

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 366/1059 (34%), Positives = 552/1059 (52%), Gaps = 100/1059 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            ++HL VH+ YS+L+G   ++N++DK   D    +AITD   +F   EF+   CA      
Sbjct: 4    YIHLHVHTHYSILDGQSKVSNLVDKAINDGMKGMAITDHGVMFGIKEFAD-YCATKNKER 62

Query: 67   -------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSR 118
                    +PI GC++ +  +   K+T++ K         +++L     GY+ LI+LVS+
Sbjct: 63   KAKGEEPFKPIFGCEMYVARR---KLTDKVKEMHDNSGYHLIVLAKNYNGYKNLIKLVSK 119

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             ++ D      R     L++   E LI+ +   +G I         + A +  L +KKLF
Sbjct: 120  SWV-DGYYYRPRTDREQLEKY-HEDLIICSACLAGEIPSKIRKGDIEGAREACLWYKKLF 177

Query: 179  GDRLYVNLQRHRGYD----RYRES-----QV----VQLAYTHELPLVATNNSLFLSEEDY 225
            GD  Y+ LQRH   D      RE+     QV    +Q A  + + LV TN+  F  +E  
Sbjct: 178  GDDFYLELQRHEVTDPNLIANREAFPLQQQVNRVLMQFAKDYNIKLVCTNDCHFEDKETA 237

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            EAHD L+ ++ +  +    R R +   + K R EM  IFSD+PEAL NT+EI  +     
Sbjct: 238  EAHDHLLCLSTNDDLDDPKRMRYSKQEWFKTREEMNQIFSDVPEALSNTIEILNKIEIYD 297

Query: 286  QVHAPILPRFIEKEC--------DDIQKEE-----------ENEL----RNKAV---AGL 319
              H PI+P F   E         +   KE+           EN+L     NK +    G 
Sbjct: 298  INHGPIMPFFPIPEDFGTEAQWREKFSKEDLYHEFTSDENGENQLPEQEANKVIDRLGGY 357

Query: 320  E------------VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            E             +LA     + Y     ++   R+ FEL+V+  M F GYFLIV DFI
Sbjct: 358  EKIYRIKFEADYLAKLAYDGACRLYGDPLPEEVNSRIRFELHVMKTMGFPGYFLIVQDFI 417

Query: 365  QWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
              A+    + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF 
Sbjct: 418  NAAENELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDTDFD 477

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D R +V+++V +KYGHE+ A IIT+ ++  K +++DV R  ++P  + + LCK IP+  
Sbjct: 478  DDGRGKVLQWVMDKYGHEKCAHIITYSTMATKNSIKDVARVEKLPLERSNALCKAIPDRL 537

Query: 484  AHPVSLQ---AIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             + + +    AI+     +EA +++   +R  ++ ++ LEG  R    HA G +I   P+
Sbjct: 538  PNGMKMNLKNAISCTPMLQEAMVSENERERNTIKYAKMLEGTIRGTGIHACGFIICRNPI 597

Query: 540  SQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
               VP+      D     +PVTQ++   IE  GLIK DFLGLKTL+ L+++   + Q   
Sbjct: 598  DDWVPVSTATDPDFPDKKVPVTQYDGHVIETTGLIKMDFLGLKTLSELKEACKVIRQTTG 657

Query: 595  KV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            KV D+  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +LYRPG
Sbjct: 658  KVIDIEKIPIDDALTYQLYQKGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNALYRPG 717

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+D L
Sbjct: 718  PMDYIPDFIKRKNDPSLVQYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESDAL 777

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+AMGKK K  +D  K +FI    +NG    I   I+    KFA Y FNKSHA  Y+ ++
Sbjct: 778  RKAMGKKKKNIVDAMKPKFIKQGQENGHDPKILEKIWSDWEKFASYAFNKSHATCYSWVA 837

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K HYP E++AA MT     + +I K  ++ +   I+ + P VN   + F V  +
Sbjct: 838  YQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKALKIETLGPDVNESQIGFGVNKH 897

Query: 834  -RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I + L+AIKG+GT  A +I+ E   + P+  + +F  RVD   +NR+V+ESL ++G  
Sbjct: 898  GEIRFGLSAIKGIGTGAAENIVKEREKNGPYKDIFNFIERVDLCSINRKVIESLAYSGGF 957

Query: 892  DCFG--YSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            D  G    R +           LD + +Y Q  +  +     ++F    G  S  +T   
Sbjct: 958  DNLGPIKCREEYFGVNAKGEVFLDTLLRYGQLFQTAKAEAANSLFG---GFDSVPVTRPA 1014

Query: 943  FSVENSSVRFE---NEQRVLGFYFSGHPLDVYKPILRKM 978
              V       E    E+ ++G Y S HPLD +  +L  +
Sbjct: 1015 IPVTEKWATIEKLNKERELVGIYLSAHPLDEFAVVLNHL 1053


>gi|21220545|ref|NP_626324.1| DNA polymerase III subunit alpha [Streptomyces coelicolor A3(2)]
 gi|256788317|ref|ZP_05526748.1| DNA polymerase III subunit alpha [Streptomyces lividans TK24]
 gi|289772211|ref|ZP_06531589.1| DNA-directed DNA polymerase subunit III alpha [Streptomyces lividans
            TK24]
 gi|14194704|sp|Q9Z618|DPO3A_STRCO RecName: Full=DNA polymerase III subunit alpha
 gi|4324655|gb|AAD16978.1| DNA polymerase III alpha subunit [Streptomyces coelicolor A3(2)]
 gi|5596809|emb|CAB51456.1| DNA polymerase III alpha chain [Streptomyces coelicolor A3(2)]
 gi|289702410|gb|EFD69839.1| DNA-directed DNA polymerase subunit III alpha [Streptomyces lividans
            TK24]
          Length = 1179

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 356/1072 (33%), Positives = 559/1072 (52%), Gaps = 64/1072 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VH+ YSLL+GA  L ++ D         IA++D  NL  A +F   A  AG+ 
Sbjct: 4    PPFTHLHVHTQYSLLDGAARLKDMFDACNEMGMSHIAMSDHGNLHGAYDFFHSAKKAGVT 63

Query: 69   PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVS 117
            PIIG +  +  + + N +    G+ P      +          +  + ++G   L  L S
Sbjct: 64   PIIGIEAYVAPESRRNKRKIQWGQ-PHQKRDDVSGSGGYTHKTMWATNSKGLHNLFRLSS 122

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              Y     ++  R+    + +  +EG++  TG  SG +           A K    ++ +
Sbjct: 123  DAYAEGWLQKWPRMDKETISQW-SEGIVASTGCPSGEVQTRLRLGHFDEALKAAADYQDI 181

Query: 178  FG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG DR ++ L  H     +R    ++++     +P + TN+S +    +  AHD L+ + 
Sbjct: 182  FGKDRYFLELMDHGIEIEHRVRDGLLEIGRKLGIPPLVTNDSHYTYAHEATAHDALLCIQ 241

Query: 236  HSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHA-PI 291
                +S  DR R     +YLK+  EM +I S     E   NT  IA             +
Sbjct: 242  TGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCANTRLIAEMIDTTGMFEKRDL 301

Query: 292  LPRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +P+F I +   +I   +E   R     G+E R   G        +D +++ ++E++VI +
Sbjct: 302  MPKFDIPEGFTEITWFQEEVRR-----GMERRFPGGV------PEDRQKQAEYEMDVIIQ 350

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F GYFL+VADFI WAK   I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP
Sbjct: 351  MGFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNP 410

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+
Sbjct: 411  ERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYA 470

Query: 471  QVDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
              DRL K +P              DP HP   +A       R    ++P V ++++ ++ 
Sbjct: 471  MGDRLTKAMPADVLGKGIDLNGITDPTHPRYSEA----GEIRSMYESEPDVKKVIDTAKG 526

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EGL R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+
Sbjct: 527  VEGLVRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLR 586

Query: 578  TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT++  ++  + + +G+ +DL  +P DD  T+ LL    TLG+FQ +   MR  L  M+
Sbjct: 587  NLTIMDDAVKMVKSNKGIDLDLLSLPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMK 646

Query: 637  PDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVII 690
            PD  EDI A+ +LYRPGP  +D+   Y  RKNG ++I  IH  ++  L+E    T G+I+
Sbjct: 647  PDNFEDISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHKELEEPLQEVLAVTYGLIV 706

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQV + AQ+++GYSL EAD+LRR MGKK  +E+ K    F +GA KNG S      ++
Sbjct: 707  YQEQVQKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFVLFQAGARKNGYSDEAIQALW 766

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            ++L  FA Y FNK+H+AAY ++SY T ++K +YP E++AA +T   D+ +K   +  + R
Sbjct: 767  DVLVPFAGYAFNKAHSAAYGLVSYWTGYLKANYPAEYMAALLTSVKDDKDKSAVYLNECR 826

Query: 811  QFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDF 868
            +  I+++PP+VN    +F   GD+ I + L+A++ VGT     I++   A   + S  D+
Sbjct: 827  RMGIKVLPPNVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIKCRKAKGKYASFPDY 886

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              +V++   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F 
Sbjct: 887  LDKVEAVVCNKRTTESLIKAGAFDEMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFG 946

Query: 929  HEKGTFSDK--ITLEKFSVENS---SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                  SD+    L+    E+    +     E+ +LG Y S HPL   + +L      G 
Sbjct: 947  GMGDEQSDEPGFGLDVVFGEDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGI 1006

Query: 984  EESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +      G+   + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1007 SQLTGGDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFP 1058


>gi|225182038|ref|ZP_03735469.1| DNA polymerase III, alpha subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225167251|gb|EEG76071.1| DNA polymerase III, alpha subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 1022

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 347/1031 (33%), Positives = 551/1031 (53%), Gaps = 55/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL+V S YS L GA  L +++ +      PAIA+ D   L  A+ F+  A   GI+P
Sbjct: 2    TFVHLRVKSEYSFLRGACRLEDLVARARELGMPAIALVDYGVLHGAVRFTNLARQYGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +  +                P    +VLLV    G+Q L+ LV+R+ L     +S 
Sbjct: 62   ILGAEFSL----------------PCGLPLVLLVRDRTGWQNLVRLVNRVQLAR--PRSD 103

Query: 130  RICLSWLQE--IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             + + W+ E   G   ++   GG +          S Q   + L   + +FG  +Y+ L+
Sbjct: 104  TLDMGWIAEDAAGLTAVLPAGGGET--------VRSRQSYIQALEQLQPVFGCEVYLGLE 155

Query: 188  RHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                    R++++V ++A    +PLVAT+N  ++   D E + ++  +     ++   R 
Sbjct: 156  DGGLPGTKRQNELVAKVAEGKNVPLVATHNVHYVLPGDDEVYRMVNCIRTGRPLAGAGRS 215

Query: 247  RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             +    +YL   +EM   F+    A ENT+++A+RC+FIL+     LP F++++C   ++
Sbjct: 216  FLPGAAYYLPAPAEMHRRFAAFSGACENTLDLAKRCTFILEQEGMQLPAFLQQDC---KE 272

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E  LR   + G++ R  +       +A+ YR RL+ EL VI     S YFLIV D + 
Sbjct: 273  PAEAVLRRLCLEGMQRRGLE-------NAEAYR-RLERELAVIIPKGLSAYFLIVHDLVS 324

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+K NI VGPGRGS  GS+ AY L I  +DPL   L FERFL+ DR   PD D+D CQ 
Sbjct: 325  YARKQNISVGPGRGSAGGSLVAYLLGIIQVDPLAHGLYFERFLSEDRSGFPDIDLDVCQR 384

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+E++ Y++++YG   VAQ+  F +L A+AA+R+VG+ L M   ++  + + +P     
Sbjct: 385  RREELLGYLRDRYGQGYVAQVSAFSTLGARAAVREVGKVLDMTGEKISTVAEALPYYAGR 444

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                 A+     F  A+L D     +L  +++LEGL RH STHA+G++IGD  L + +P+
Sbjct: 445  GGIEAAVGQYPEFMSAKLRDEDSGTVLAGARRLEGLCRHLSTHASGVIIGDGNLQEALPL 504

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             R    ++ +TQ++   +E+ G +K D LG + LT+   +L ++ +R G  +    IP D
Sbjct: 505  CRGPAGEV-LTQWDKDDVEEMGFLKIDVLGSRNLTIAHDALSWVRKRHGTTLVAEEIPLD 563

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
            D +TY +L    +LG FQLES GMR+ L  + P  +ED+I L+SLYRPGP ++ +V  + 
Sbjct: 564  DEDTYAMLRRGESLGCFQLESVGMRRVLRRLAPQRLEDLIHLLSLYRPGPWESGLVESFI 623

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R++G+E +  +HPL+  +L ET GV++YQEQVMQ+A  L GY+  EAD LRR M +++ 
Sbjct: 624  ARRHGREDMSGVHPLLTGILAETYGVVLYQEQVMQVACELGGYTPGEADGLRREMSRRLP 683

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
               +  + +F++GA K G+S+  A ++F  L +FA Y FNK+H+AAYA++SY TA++K H
Sbjct: 684  SLQEFHQPKFVAGAVKRGLSRAEAEDVFTHLCRFAGYSFNKAHSAAYALVSYWTAYLKKH 743

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YPVEF AA ++           + ++A    + ++PP VN   + F      I  +L  +
Sbjct: 744  YPVEFYAALLS-SGSGYYATAVYVREAAIRGVPVLPPHVNHSGLSFVPEKEAIRSALPVV 802

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            + +G   A  ++EA    PF SL DFC RV    L R  L +L+ AGA    G +R Q L
Sbjct: 803  RDLGARAAEALLEAQKKGPFMSLHDFCCRVGRSALRRSALVNLIKAGAFAGLGRNRRQAL 862

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             SLD++ K   W ++            E+   S    L  FS          E   LG  
Sbjct: 863  ASLDHVLK---WTDRQPGQLSLLDLMPEE---SAVPALPDFSWPEV---VAAELETLGMA 913

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             S HPL  YK  L+ +  +          G  + +A  V+ + +++ ++G  +  +  S+
Sbjct: 914  LSDHPLACYKKQLQSVSREPLCNLCNLPVGTKVTVAGTVMGRTRRRLKQGGVMLTLFISD 973

Query: 1023 PAKEYEANFFP 1033
             +   EA F+P
Sbjct: 974  ESGFAEAVFYP 984


>gi|15827612|ref|NP_301875.1| DNA polymerase III subunit alpha [Mycobacterium leprae TN]
 gi|221230089|ref|YP_002503505.1| DNA polymerase III subunit alpha [Mycobacterium leprae Br4923]
 gi|14194699|sp|Q9X7F0|DPO3A_MYCLE RecName: Full=DNA polymerase III subunit alpha
 gi|4539136|emb|CAB39586.1| putative DNA polymerase III alpha chain [Mycobacterium leprae]
 gi|13093163|emb|CAC31588.1| DNA polymerase III, [alpha] subunit [Mycobacterium leprae]
 gi|219933196|emb|CAR71302.1| DNA polymerase III, [alpha] subunit [Mycobacterium leprae Br4923]
          Length = 1177

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 365/1079 (33%), Positives = 572/1079 (53%), Gaps = 83/1079 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  +  +  ++   Q PA+ +TD  N+F A EF   A  AGI+P
Sbjct: 5    SFVHLHNHTEYSMLDGAAKITPMFAEVERLQMPAVGMTDHGNMFGASEFYNTAIKAGIKP 64

Query: 70   IIGCQLDIDMQ---DNLKMT-------NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  I      D  ++T           +       + ++   A G + L +L S  
Sbjct: 65   IIGVEAYIAPGSRFDTRRITWGDPSQKADDVSAGGAYTHLTMVAENAAGLRNLFKLSSLA 124

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
                Q  +  R+    + E   EG+I+ TG  SG +         + A +    ++++ G
Sbjct: 125  SFEGQLSKWSRMDAELIGEY-AEGIIVTTGCPSGEVQTRLRLGHDREALESAAKWREIVG 183

Query: 180  -DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             D  ++ L  H G     R RE  ++ +     +P +ATN+  +++ +    H+ L+ V 
Sbjct: 184  PDNYFLELMDH-GLSIEQRVREG-LLNIGRKLNIPPLATNDCHYVTRDAVHNHEALLCVQ 241

Query: 236  HSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPI-- 291
                +S  +R +   D +YLK+ +EM  ++ D +P A ++T+ IA R      V  P   
Sbjct: 242  TGKTLSDPNRFKFHGDGYYLKSAAEMRQLWDDEVPGACDSTLLIAERVQSYADVWEPRNR 301

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +P F       +  ++ + LR++  AGL+ R   G          Y +R  +E++VI   
Sbjct: 302  MPVFPVP----VGHDQASWLRHEVDAGLKRRFPDGP------PNGYVERAAYEIDVICDK 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFLIVAD +  A+   I VGPGRGS AGS+ AYAL ITDIDP+   LLFERFLNP+
Sbjct: 352  GFPAYFLIVADLVNHARSVGIRVGPGRGSAAGSLAAYALGITDIDPIPHGLLFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPY 469
            R SMPD DIDF   RR E++RY  +K+GH+RVAQ+ITFG+++ KAAL+D  R    Q  +
Sbjct: 412  RTSMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGF 471

Query: 470  SQVDRLCK-LIPNDPAHPVSLQAIADDS--RFREAR------LADPSVDRLLEISQKLEG 520
            +  DR+ K L P   A  + L  I D +  RF+EA         D  V  + + ++ LEG
Sbjct: 472  AMADRITKALPPAIMAKDIPLSGITDPAHERFKEAAEVRSLIETDSDVRIIYQTARGLEG 531

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ LT
Sbjct: 532  LIRNAGVHACAVILSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLT 591

Query: 581  LLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  +++ +   RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP  
Sbjct: 592  IIGDAIENIKTNRGIDLDLESVPLDDQATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTG 651

Query: 640  IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQE 693
             EDI+A+++LYRPGP+       Y +RKN ++ I  IHP L +P+   L ET G+I+YQE
Sbjct: 652  FEDIVAVLALYRPGPMGMNAHNDYADRKNNRQVIKPIHPELEEPLREILAETYGLIVYQE 711

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            Q+M+IAQ ++GYSL+ AD+LR+AMGKK +E ++K+ E F  G   NG S      +++++
Sbjct: 712  QIMRIAQKVAGYSLARADILRKAMGKKKREVLEKEFEGFSEGMQANGFSVHAIKALWDII 771

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FADY FNKSHAA Y +ISY TA++K ++  E++A  +T   D+ +K   +  D R+F 
Sbjct: 772  LPFADYAFNKSHAAGYGLISYWTAYLKANFAGEYMAGLLTSVGDDKDKAAVYLADCRKFG 831

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRV 872
            I ++PP VN   +DF      I Y L A++ VG      +++  +A   F    D+ +++
Sbjct: 832  ITVLPPDVNESVLDFASVGADIRYGLGAVRNVGANVVGSLIKTRNAKGKFADFSDYLNKI 891

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFA 928
            D    N++V ESL+ AGA D  G+SR  L      ++D++           T K E I  
Sbjct: 892  DITSCNKKVTESLIKAGAFDSLGHSRKGLFLVHADAVDSVLG---------TKKAEAIGQ 942

Query: 929  HEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGIKG 982
             +    +D  T   F+++     +E+      E+ +LG Y SGHPL+    +L       
Sbjct: 943  FDLFGGTDGGTDAVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQ---- 998

Query: 983  YEESVATI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVT--FSEPAKEYEANFFP 1033
             + ++ TI          +R+  ++ +  ++  + G  I W +    +     E  FFP
Sbjct: 999  VDTAIPTILDGGVSNDTQVRVGGILAAVNRRVNKNG--IPWASAQLDDLTGGIEVMFFP 1055


>gi|242242967|ref|ZP_04797412.1| DNA polymerase III alpha chain [Staphylococcus epidermidis W23144]
 gi|242233568|gb|EES35880.1| DNA polymerase III alpha chain [Staphylococcus epidermidis W23144]
          Length = 1065

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 344/1038 (33%), Positives = 554/1038 (53%), Gaps = 111/1038 (10%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI G
Sbjct: 4    HLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              + I + D L           T+ ++VL     +G + L +L S + +    K    + 
Sbjct: 64   --MTIYLTDGLY----------TIETVVL-AKNNQGLKSLYQLSSAIMM----KNKEEVP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRHRG 191
            + WL++     +I+              F  ++++ K+++  F+      LY+N   +  
Sbjct: 107  IEWLKKYDKHLIII--------------FKEAELSHKQIIDAFEG--KKELYLNHNSNNT 150

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKDRPRV 248
                R               V   ++ +L+E+D E    L A+  +T   ++ +K+    
Sbjct: 151  LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKE---- 191

Query: 249  TPDHYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDD----- 302
            T D +  +  E+ ++  +L E  + NT EI + C   +  H  +LP+F+    +      
Sbjct: 192  TLDEHFPSMEELQTL--NLSEDMIANTNEIEKLCQAEIAYHQSLLPQFVTPNGETSKDYL 249

Query: 303  ----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                I + ++ EL +K                      Y  RL  E  +I  M F  YFL
Sbjct: 250  WTILIHRLQKWELNDKT---------------------YFDRLKHEYKIITDMGFEDYFL 288

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV+D I +AK + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD 
Sbjct: 289  IVSDLIHFAKTHEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDI 348

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDF   RR++VI+YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KL
Sbjct: 349  DIDFEDTRREKVIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKL 408

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP+     ++L+       F+     +   +R  E+S+KLEGL RH STHAAGI+I D+P
Sbjct: 409  IPHKLG--ITLEEAYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQP 466

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVD 597
            L +  P+       L  TQ+ M   E+ GL+K DFLGL+ L+++ Q  L       + +D
Sbjct: 467  LFKFAPLTTGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINID 524

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP+DD + + LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ 
Sbjct: 525  IEAIPYDDKKVFDLLSNGDTTGIFQLESEGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEE 584

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y  R++   ++  +HP ++P+LK T GVIIYQEQ+MQIA  ++G+S  EAD+LRRAM
Sbjct: 585  IPTYITRRHNPNQVAYLHPDLEPILKNTYGVIIYQEQIMQIASQVAGFSYGEADILRRAM 644

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             KK +  ++ +++ FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +
Sbjct: 645  SKKNRAILESERQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMS 704

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYP  F A  ++  + + +K      +A+   I I+PP++N     +K  +  IY 
Sbjct: 705  YLKVHYPHYFYANILSNVIGSEKKTAAIIDEAKHQRISILPPNINQSHWYYKASNKGIYL 764

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            SL  IKG+G  + + I+ E   + P+    DF  R+  +  NR++LESL+  GA D FG 
Sbjct: 765  SLGTIKGIGYQSVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGK 824

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LLQ++D +      VE++     + +F       + K + E+       +  + E+
Sbjct: 825  TRATLLQAIDQVLDLNSDVEQD-----DMLF----DLLTPKQSYEEKEELPDQLLSDYEK 875

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRKGSRI 1015
              LGFY S HP++      +K   K Y        G++ + +       +Q +T+ G  +
Sbjct: 876  EYLGFYISKHPVE------KKFEKKQYLGIFQLSNGSHYQPILVQFDHIKQIRTKNGQNM 929

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +VT ++     +   FP
Sbjct: 930  AFVTMNDGRTMMDGVIFP 947


>gi|229552164|ref|ZP_04440889.1| possible DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|229314466|gb|EEN80439.1| possible DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
          Length = 1098

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 346/1041 (33%), Positives = 542/1041 (52%), Gaps = 85/1041 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L +++         A+A+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALPDLIQAAKNRGYSAVALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q++I                     ++++     GY +L++L +++ L  Q     
Sbjct: 62   LLGMQIEI-----------------ADAKLLVIAENNTGYHQLLKLSTQIMLAQQ----- 99

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               L++   +   GL  +T   S P   A        A+  L T K      LY+ +   
Sbjct: 100  --PLAFADLLPLNGLAAVTLPDS-PFGVAVSERHEDQAQTFLTTLKAKQPSSLYIGVD-- 154

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               + + E  +   A T +LPL+A  N L+    D     V++A+   + ++ +D P +T
Sbjct: 155  ---EEHLEGTLPAFADTVKLPLLALGNVLYRDPTDAFTQKVMVAIETGSQLNFRD-PVLT 210

Query: 250  P--DHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 +LK  ++    F  + L  A+  T  IA R    +    P LP +   +    Q 
Sbjct: 211  DAGPAWLKPPTDAAKPFVQAGLQAAVTQTEAIAARADVTIDFKQPQLPHYQTPD----QT 266

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVA 361
              ++ L          +LA+  +AK +H Q     Y+ RL +EL VI  M F+ YFL+V 
Sbjct: 267  PSKDYL---------TKLAESGLAKRFHGQSIPPAYQDRLQYELRVIIEMGFADYFLVVW 317

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A K NI  G GRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D+D
Sbjct: 318  DVMNYAHKVNIMPGAGRGSAAGSLVSYALAITEVDPIEYNLLFERFLNPARAQMPDIDLD 377

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
               +RR E+I+YV +KYG   +AQIITFG+  AK A+RDV R   +   + +   K IPN
Sbjct: 378  IPDNRRGELIQYVHDKYGKNHMAQIITFGTFGAKQAIRDVARVFGLSQFESNTWSKAIPN 437

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 + L+   + S+  +  +AD   +R+L + +  LEGL RH STHAAGIV+ + PL+
Sbjct: 438  --LFYIDLKTAYEQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLT 495

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
              V + +     L  TQ     +E  GL+K DFLGLK L +L  +  F+ +  G   D  
Sbjct: 496  DTVAL-QPSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGKPFDPK 554

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD  T  L     T G+FQ ESSG++  L  ++P   ED++A+ +LYRPGP++NI 
Sbjct: 555  AIPLDDQPTLALFARGDTNGVFQFESSGIKNVLRKLRPTAFEDVVAVNALYRPGPMENID 614

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RKNG+E I    P +  +L+ T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM K
Sbjct: 615  TFIARKNGQEPIAYPDPALAKILRPTYGVLVYQEQVMQVANVMGGFSLGEADLLRRAMSK 674

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    +  ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+ +++  A++
Sbjct: 675  KKSSVLAAEQDKFIEGALKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSKVAFWLAYL 734

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYP  F AA M   M+N+ K++ + Q+A+   + ++ P +N     FK+   +I + L
Sbjct: 735  KVHYPAAFFAALMNASMNNLPKLRTYVQEAKARKVGLLGPDINQSNGGFKLSQGKIRFGL 794

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             +IKG+       I  A  + PF  L D   R+D K L     ++   AGA D F  +R 
Sbjct: 795  LSIKGMRRDFVEAIFAARKNGPFKDLRDLLQRLDPKWLKTDYYKAPTLAGAFDQFSNNRA 854

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE----NSSVRFENE 955
            Q L +LD +    +            +  ++ G FS    L   ++E     +S R E E
Sbjct: 855  QTLANLDELINSVK------------LAGNDVGLFS---MLAPKTIEVPEMPASERLEAE 899

Query: 956  QRVLGFYFSGHPLDVYKPI---LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              VLG Y SGHP+D Y P+    R + +   EE      G  + +  +V   ++ +T+ G
Sbjct: 900  AEVLGVYLSGHPVDKYAPLKTQYRLINVSDLEE------GRAVDILLLVRHIKRIRTKTG 953

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + ++   +         FP
Sbjct: 954  KPMAFIDGQDATGNVSLTIFP 974


>gi|317488485|ref|ZP_07947036.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA]
 gi|325831887|ref|ZP_08164984.1| putative DNA polymerase III subunit alpha [Eggerthella sp. HGA1]
 gi|316912417|gb|EFV33975.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA]
 gi|325486208|gb|EGC88660.1| putative DNA polymerase III subunit alpha [Eggerthella sp. HGA1]
          Length = 1153

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 346/1057 (32%), Positives = 560/1057 (52%), Gaps = 62/1057 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN------NLFSALEFSQKAC 63
            +FVHL  H+ YSLL+G   + +++ + A    PA+AI+D         L    +  +   
Sbjct: 2    AFVHLHNHTEYSLLDGHTHIYDMVKRAADLDMPAVAISDHGVMSGVPQLCEMCDKVEAET 61

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
               ++PI GC++     + L+     K   P +  ++LL  T EGY  L++LVS  ++ D
Sbjct: 62   GKRVKPIYGCEVYFTTDEELR-----KDTKPKLYHLLLLAKTNEGYHNLVKLVSESHV-D 115

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE--KRLLTFKKLF--G 179
                  R   S LQ+ G +G+I  +   +G I +    ++ QV E  +    F   F  G
Sbjct: 116  NFYYKPRTTFSMLQKYG-KGIIGSSACIAGIIPK--LLDNRQVDEAVEWAKKFASCFEPG 172

Query: 180  DRLYVNLQRH-----RGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            D  Y+ LQ        G+ +   + ++  +A    L  +ATN+  +L+ ED  A D ++ 
Sbjct: 173  D-FYIELQNQGIRTDAGFTQTELNHMLTDVAKAAGLKTIATNDFHYLTREDARAQDYMLC 231

Query: 234  VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +      +  +R R   D  Y+K   EM     D PEA + TVE+A + + +L+  + IL
Sbjct: 232  IGTGAAFNDANRMRFENDQFYMKTEEEMREALKDFPEACDTTVEVAEKVNVVLERDS-IL 290

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            PRF   E +     EE+  R +   GL               Q+ ++R D+E+ +I +  
Sbjct: 291  PRFPLPEGE----TEESYFRKRVQEGLVKHYGNPV------PQEAQERADYEMGIIIQQG 340

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F  YFLIV ++I+WA+   I VGPGRGS AG++ AYA+ IT +DPL   LLFERFL+P+R
Sbjct: 341  FPAYFLIVQEYIEWARSQGIGVGPGRGSAAGAIVAYAMDITALDPLSNGLLFERFLSPER 400

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            + MPD D+DF Q RR+EVI ++++ YG + V+Q+ITFG+LQAK A+RD  R L  PYS  
Sbjct: 401  VEMPDIDVDFEQGRREEVINHIKDVYGEDHVSQVITFGTLQAKNAVRDAARVLDYPYSTG 460

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            D++ K+I ++    +  +A+A +   ++A   +  V  +++ +  +EG  R    HA   
Sbjct: 461  DKITKMIGDELGITID-KALATNPDLKKAYETEEDVKAVIDAALSIEGHVRGEGVHACAT 519

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            +I   P++  VPM RD +    +TQ++  +  + GL+K DFLGL+TL +L  +   + QR
Sbjct: 520  IICRDPMADHVPMKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLDVLTIACRNIEQR 579

Query: 593  -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             G KV    IP DD   + L+ +    G+FQ+E +        + P    DI+A ++L R
Sbjct: 580  FGTKVIPEDIPIDDEGAFKLMQSGNMDGLFQVEGALYVSLFARLPPTRFSDIVASIALNR 639

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+++ +V  Y    +GK  I      + P+L+ET G ++YQEQ+MQI+  +SG+S  +
Sbjct: 640  PGPLESGMVEDYIKVASGKTSIHYYDERLRPILEETYGTMVYQEQIMQISMAMSGFSAGK 699

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD LR+AMGKK  + M   +E + +GA +NG    IA  I+E   KFA Y FNKSH+AAY
Sbjct: 700  ADKLRKAMGKKKLDVMRALQEDWNTGAVENGYPLEIAKQIWEDAEKFAKYAFNKSHSAAY 759

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++  +TA++K HYP +F+AA ++  M N +++ ++        I ++PP +N+   +F 
Sbjct: 760  AILVMRTAYLKAHYPNDFMAAVLSSYMGNTDRLIRYIASCNHSGIPVLPPDINSSNAEFT 819

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              D  + + L  ++GVG   A  I+E   A+ PF SL DF +R+D+K  NR+ LE+L+  
Sbjct: 820  PTDEGVRFGLVGVRGVGANVAEAIIEEREANGPFTSLHDFVNRLDAKCYNRKTLEALIKG 879

Query: 889  GALDCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFS 944
            GA D  GY+R QL+  +D   + + A   +K+R +   ++F      F D      E+  
Sbjct: 880  GAFDSTGYTRKQLMYFVDETPLLESASKRQKDRESGQVSMF----DLFGDDPDSGFEEEV 935

Query: 945  VENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKM---GIKGYEESVATIRGNNI 995
             E   V +        E+ ++  Y S HPL  Y+  + +M    +    E    I+  + 
Sbjct: 936  PEPDGVEWPKRQLLTFEKEIMKIYVSDHPLRPYEGTIARMTKFSLGDLAERTKEIK--SA 993

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                M+ +   K T++G+++   T  +     E   F
Sbjct: 994  VFVGMISNVVTKLTKRGTKMATFTLEDTTGHVECICF 1030


>gi|297626372|ref|YP_003688135.1| DNA polymerase III alpha subunit [Propionibacterium freudenreichii
            subsp. shermanii CIRM-BIA1]
 gi|296922137|emb|CBL56705.1| DNA polymerase III alpha subunit [Propionibacterium freudenreichii
            subsp. shermanii CIRM-BIA1]
          Length = 1190

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 360/1063 (33%), Positives = 554/1063 (52%), Gaps = 73/1063 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG- 66
            S +F HL VH+ YS+L+GA S + +  ++A    PA+A+TD  N+F A EF Q A     
Sbjct: 3    SKNFAHLHVHTEYSMLDGAASNDKLFAEVARQGMPAVAMTDHGNMFGAYEFYQTAKKYDG 62

Query: 67   -----IQPIIGCQLDIDMQDNLKMT-----NQGKTPFPTVPS------------IVLLVS 104
                 ++PIIG +  +     L  +     N+  T  P                + +L +
Sbjct: 63   EQNPLVKPIIGIEAYVAPSTRLSRSPEFWGNRRDTGSPDTEGGKDVSGGGRYTHMTMLAA 122

Query: 105  TAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS 164
             A G   L +L S +   +      R+    + +  +EG+I  TG  SG +         
Sbjct: 123  NATGLHNLFKL-SSLASYEGYYMKPRMDRELIAKY-SEGIIGSTGCPSGEVQTRLRLGQF 180

Query: 165  QVAEKRLLTFKKLFG-DRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLS 221
            + A +    ++ + G +  Y  L  H G D   +  + +++LA   +LPL+ATN+S +++
Sbjct: 181  EEACEAAAAYQDILGKENYYCELMDH-GVDIEHQVRADLLRLAKRLKLPLLATNDSHYVT 239

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            E+  + HD L+ +         DR R     +Y+K  +EM ++F  L EA +NT+ IA R
Sbjct: 240  EDQADDHDNLLCIGVGRNKDDPDRFRFNGSGYYIKTAAEMRALFPGLEEAADNTLAIAER 299

Query: 281  CSFILQVHAPI--LPRFIEKECDDIQKEEENE--LRNKAVAGLEVRLAQGAIAKGYHAQD 336
                 +V + +  +P+F      D+   E  E  LR K   GL+          G H  D
Sbjct: 300  IESYEEVFSYVDRMPQF------DVPAGETQESWLRKKVKIGLKKHY-------GDHPSD 346

Query: 337  -YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
               +R++ EL VI  + FS YFL+V+D    A+K  +PVGPGRGS AGS+ AY   I  I
Sbjct: 347  AVMERVETELKVIEPLGFSSYFLVVSDICDAARKMGVPVGPGRGSAAGSIIAYLTDIIAI 406

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DPL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TF  ++AK
Sbjct: 407  DPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGEEYTSQVNTFNKIKAK 466

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDS--------RFREARLADP 506
            AA++D  R L  P+S  DR+ K +P D     V L  + D+S         FR    +DP
Sbjct: 467  AAVKDANRILGYPFSLGDRITKAMPPDVMGKGVPLNKLFDESNGRYSEGQEFRNLYNSDP 526

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
             V R+++    +EGL R +  HA   ++    L  LVPM++  +  + +  F    +E+ 
Sbjct: 527  DVKRVVDTGMGIEGLIRGSGVHACAFILSSEKLLNLVPMHKRDKDGMIIAGFAYPQLEEM 586

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K DFLGL+ L ++   +  + + RG  VDL  +P DD  TY L+    TLG+FQL+ 
Sbjct: 587  GLMKMDFLGLRNLGIMDHCVKNIKRNRGEDVDLQKLPLDDAATYELMARGDTLGVFQLDG 646

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----ID 679
              MR  L  M P C +DIIA+++LYRPGP+  +  + Y +RKNG+  IV IHP     +D
Sbjct: 647  GAMRSLLRQMGPTCFDDIIAVIALYRPGPMGANAHIEYADRKNGRRPIVPIHPELKDDLD 706

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
             +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +D+  + F  G   N
Sbjct: 707  EILAPTYHLIVYQEQIMAIARKLAGYTLGGADLLRRAMGKKKKYILDENFKPFQKGMRDN 766

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G S      +++++  FA Y FNKSHA  YA++SY TA++K +YP E+ AA +T   D+ 
Sbjct: 767  GYSDESMQALWDVMVPFAGYAFNKSHATGYALVSYWTAYLKANYPAEYGAALLTSVGDDK 826

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
            +K+  +  D R   I+++ P VN    +F      I + L AI+ VG +    I+EA  D
Sbjct: 827  DKMALYLSDMRAQRIKVLAPDVNASEKEFTAVGEDIRFGLGAIRNVGDSVVGGIVEARTD 886

Query: 860  K-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
              P     +F   V     N+R +ESL+ AGA D  G+SR  L+   +        +++N
Sbjct: 887  HGPAHDFFEFLDNVPLSVCNKRCIESLIKAGAFDSMGHSRRALMDVFETAVDGVIDLKRN 946

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVE-----NSSVRFENEQRVLGFYFSGHPLDVYKP 973
            + N  +++F    G  ++       +V      +   +   E+ +LG Y S HPL   + 
Sbjct: 947  QANGQDDLFGDLGGGDAESDPAMNHTVPDIPDWDKRTKLAFEREMLGLYVSDHPLRGLEH 1006

Query: 974  IL---RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            +L   R +G+    E  A   G+   +  M+   Q+K+T+KG+
Sbjct: 1007 VLSAERTIGLGQIAEQGAEADGHVEVICGMITQVQRKQTKKGA 1049


>gi|227893479|ref|ZP_04011284.1| possible DNA-directed DNA polymerase [Lactobacillus ultunensis DSM
            16047]
 gi|227864704|gb|EEJ72125.1| possible DNA-directed DNA polymerase [Lactobacillus ultunensis DSM
            16047]
          Length = 1035

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 352/1032 (34%), Positives = 549/1032 (53%), Gaps = 60/1032 (5%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    + ++L         A+ +TD N  +  + F + A  AGI+P++G 
Sbjct: 6    LQNLSSFTLLDSPTKIVDLLKTAKEKGYQAVGLTDVNVTYGLVNFYELAKRAGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
            Q+ ++          G         +++      GY  L+ L S + LL D G+    + 
Sbjct: 66   QVRLN----------GLIDSTQKYDLIVFAKNNAGYHNLLRLSSAINLLTDNGQNDKILT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L+ L +   + L+++   +   +   F  N  Q+    +   KKL  + LY+ +      
Sbjct: 116  LTELTKYLDDLLVIVPANTHSELLNLFETNQ-QLGSDYIRDLKKLTSE-LYLGVYASNSS 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD- 251
            + Y +  V  LA   ELPLVAT +  +L   D      L A+  S    Q   P    D 
Sbjct: 174  ESYVDY-VHALAKQFELPLVATEDCEYLRPRDQFLQKTLRAI-RSGQKMQDTIPLAKQDG 231

Query: 252  -HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             H+L N  EM+  +   +L +A+ NT +IA  C+  +    P+LP++ +   D     EE
Sbjct: 232  SHFLANAEEMLERYHRFNLDDAVNNTWKIAEECNAEVIFQKPVLPKYHQ---DKFATSEE 288

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L + A  GL+ R  +G +       +Y++RL++EL VI +M F  YFLIV D I +  
Sbjct: 289  -YLHHLAQTGLQARFGKGKVPA-----EYQKRLNYELRVINQMGFDNYFLIVWDVINYCH 342

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS  GS+ +YAL IT++DPL++ LLFERFLNP R  MPD D+D     RD
Sbjct: 343  RVKITTGPGRGSACGSLVSYALRITEVDPLKYHLLFERFLNPARHEMPDIDLDIPDIHRD 402

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   +V++  + IP      ++
Sbjct: 403  TVIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEVNKWARAIPYS-KDKMT 461

Query: 489  LQAIADDSRFREARL---ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            L+   ++SR  E RL   A P    L + + +LEGL RH S HAAG+VI D  ++ +  +
Sbjct: 462  LKRAYEESR--ELRLLVDATPENKLLFKTAMELEGLPRHYSIHAAGLVISDDSIAGISGL 519

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                   +PVTQ   K++E  GL+K DFLGL+ LT+L   LD + Q+GV +D + IP +D
Sbjct: 520  QAGPLG-IPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILDLVRQQGVNIDPNKIPLND 578

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T  +FQ ES G+RQ L  + PD  ED++A+ +LYRPGP+ NI  +  RK
Sbjct: 579  QATLKLFQEGKTDAVFQFESGGIRQVLRKLHPDDFEDLVAVNALYRPGPMQNIDTFIARK 638

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ +
Sbjct: 639  NGQEPVKYPDPSLKQILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVI 698

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++ +FI+G  K G  K +A  ++  + +FA+YGFN+SHA AY  I++  A++K HYP 
Sbjct: 699  EQERSKFITGTVKKGHPKEVAERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPA 758

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  A   L      K + +   A++ +I I+ P +N   +D+ + +N I   L AIKG+
Sbjct: 759  AFYTA--MLNSSTAVKAQGYIMQAQEADIHILAPDINRSHLDYSLENNDILVGLKAIKGL 816

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS- 904
                A+ I E    K + SL DF  R+D+K L    +E+L+ AGA D    +R +LL + 
Sbjct: 817  RVDFAKEIAENK--KQYKSLSDFLRRIDAKFLQVDAIEALIMAGAFDQIEDNRNELLANC 874

Query: 905  ---LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               + N+Q   Q +  +       +   EK T ++K               E E++VLGF
Sbjct: 875  KEIIANVQLTGQNISLSEILGDAPLKPAEKPTNAEKA--------------EMEEKVLGF 920

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
              +  PL   +   +K   +   +    I  + I +  ++  K Q +T+ G  + + TF+
Sbjct: 921  ATTTTPLVAVQKYAKKFDARALNQ--FQINESGISVGKLMKYK-QIRTKNGKTMAFATFA 977

Query: 1022 EPAKEYEANFFP 1033
            + + + E   FP
Sbjct: 978  DSSSQQEVIIFP 989


>gi|257790804|ref|YP_003181410.1| DNA polymerase III, alpha subunit [Eggerthella lenta DSM 2243]
 gi|257474701|gb|ACV55021.1| DNA polymerase III, alpha subunit [Eggerthella lenta DSM 2243]
          Length = 1153

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 346/1057 (32%), Positives = 560/1057 (52%), Gaps = 62/1057 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN------NLFSALEFSQKAC 63
            +FVHL  H+ YSLL+G   + +++ + A    PA+AI+D         L    +  +   
Sbjct: 2    AFVHLHNHTEYSLLDGHTHIYDMVKRAADLDMPAVAISDHGVMSGVPQLCEMCDKVEAET 61

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
               ++PI GC++     + L+     K   P +  ++LL  T EGY  L++LVS  ++ D
Sbjct: 62   GKRVKPIYGCEVYFTTDEELR-----KDTKPKLYHLLLLAKTNEGYHNLVKLVSESHV-D 115

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE--KRLLTFKKLF--G 179
                  R   S LQ+ G +G+I  +   +G I +    ++ QV E  +    F   F  G
Sbjct: 116  NFYYKPRTTFSMLQKYG-KGIIGSSACIAGIIPK--LLDNRQVDEAVEWAKKFASCFEPG 172

Query: 180  DRLYVNLQRH-----RGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            D  Y+ LQ        G+ +   + ++  +A    L  +ATN+  +L+ ED  A D ++ 
Sbjct: 173  D-FYIELQNQGIRTDAGFTQTELNHMLTDVAKAAGLKTIATNDFHYLTREDARAQDYMLC 231

Query: 234  VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +      +  +R R   D  Y+K   EM     D PEA + TVE+A + + +L+  + IL
Sbjct: 232  IGTGAAFNDANRMRFENDQFYMKTEEEMREALKDFPEACDTTVEVAEKVNVVLERDS-IL 290

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            PRF   E +     EE+  R +   GL               Q+ ++R D+E+ +I +  
Sbjct: 291  PRFPLPEGE----TEESYFRKRVQEGLVKHYGNPV------PQEAQERADYEMGIIIQQG 340

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F  YFLIV ++I+WA+   I VGPGRGS AG++ AYA+ IT +DPL   LLFERFL+P+R
Sbjct: 341  FPAYFLIVQEYIEWARSQGIGVGPGRGSAAGAIVAYAMDITALDPLSNGLLFERFLSPER 400

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            + MPD D+DF Q RR+EVI ++++ YG + V+Q+ITFG+LQAK A+RD  R L  PYS  
Sbjct: 401  VEMPDIDVDFEQGRREEVISHIKDVYGEDHVSQVITFGTLQAKNAVRDAARVLDYPYSTG 460

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            D++ K+I ++    +  +A+A +   ++A   +  V  +++ +  +EG  R    HA   
Sbjct: 461  DKITKMIGDELGITID-KALATNPDLKKAYETEEDVKAVIDAALSIEGHVRGEGVHACAT 519

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            +I   P++  VPM RD +    +TQ++  +  + GL+K DFLGL+TL +L  +   + QR
Sbjct: 520  IICRDPMADHVPMKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLDVLTIACRNIEQR 579

Query: 593  -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             G KV    IP DD   + L+ +    G+FQ+E +        + P    DI+A ++L R
Sbjct: 580  FGTKVIPEDIPIDDEGAFKLMQSGNMDGLFQVEGALYVSLFARLPPTRFSDIVASIALNR 639

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+++ +V  Y    +GK  I      + P+L+ET G ++YQEQ+MQI+  +SG+S  +
Sbjct: 640  PGPLESGMVEDYIKVASGKTSIHYYDERLRPILEETYGTMVYQEQIMQISMAMSGFSAGK 699

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD LR+AMGKK  + M   +E + +GA +NG    IA  I+E   KFA Y FNKSH+AAY
Sbjct: 700  ADKLRKAMGKKKLDVMRALQEDWNTGAVENGYPLEIAKQIWEDAEKFAKYAFNKSHSAAY 759

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++  +TA++K HYP +F+AA ++  M N +++ ++        I ++PP +N+   +F 
Sbjct: 760  AILVMRTAYLKAHYPNDFMAAVLSSYMGNTDRLIRYIASCNHSGIPVLPPDINSSNAEFT 819

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              D  + + L  ++GVG   A  I+E   A+ PF SL DF +R+D+K  NR+ LE+L+  
Sbjct: 820  PTDEGVRFGLVGVRGVGANVAEAIIEEREANGPFTSLHDFVNRLDAKCYNRKTLEALIKG 879

Query: 889  GALDCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFS 944
            GA D  GY+R QL+  +D   + + A   +K+R +   ++F      F D      E+  
Sbjct: 880  GAFDSTGYTRKQLMYFVDETPLLESASKRQKDRESGQVSMF----DLFGDDPDSGFEEEV 935

Query: 945  VENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKM---GIKGYEESVATIRGNNI 995
             E   V +        E+ ++  Y S HPL  Y+  + +M    +    E    I+  + 
Sbjct: 936  PEPDGVEWPKRQLLTFEKEIMKIYVSDHPLRPYEGTIARMTKFSLGDLAERTKEIK--SA 993

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                M+ +   K T++G+++   T  +     E   F
Sbjct: 994  VFVGMISNVVTKLTKRGTKMATFTLEDTTGHVECICF 1030


>gi|159026760|emb|CAO86641.1| dnaE [Microcystis aeruginosa PCC 7806]
          Length = 874

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 319/792 (40%), Positives = 481/792 (60%), Gaps = 61/792 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+     QPAIA+TD   ++ A+E  +     GI+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPALIDRAIELGQPAIALTDHGVMYGAIELIKTCRNKGIKP 61

Query: 70  IIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QG 125
           IIG ++ +   D++ NL+     +         V+L    +GY+ L++L +   L   QG
Sbjct: 62  IIGNEMYVVNGDIEVNLRHRKYHQ---------VVLAKNTQGYKNLVKLTTISNLKGIQG 112

Query: 126 KQS-VRICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
           K    R C++   LQ+   EGLI+ +    G I +A   N+ ++A++    +KKLFGD  
Sbjct: 113 KGIFARPCINKELLQQY-HEGLIVTSACLGGEIPQAILANNRKLAKETAKWYKKLFGDDF 171

Query: 183 YVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           Y+ +Q H    DR    ++V++A    + +VATN+S F+S  D EAHD L+ +  + +++
Sbjct: 172 YLEIQDHGSKEDRIVNVEIVKIAKELGIKVVATNDSHFISCYDVEAHDALLCIQTAKLIT 231

Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSD-LPE-----ALENTVEIARRCSFILQVHAPILPRF 295
           +  R R +   YLK+  EM  +F D LPE     A+ NT+E+A +       + P LP +
Sbjct: 232 EDKRLRYSGTEYLKSADEMRLLFRDHLPEDVIEEAINNTLEVAEKVEPYNIFNEPRLPNY 291

Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKF 353
                       ++ +   A  GL  RL         H  +  Y++RL++EL ++ +M F
Sbjct: 292 PVPAG----HTADSYVEEIAWLGLLERLK----CPSRHEIEPVYKERLEYELKMLQKMGF 343

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
           S YFL+V D+I++A+ ++IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP+R 
Sbjct: 344 STYFLVVWDYIKYARDHDIPVGPGRGSAAGSLVAYSLKITNIDPVHHGLLFERFLNPERK 403

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
           SMPD D DFC +RRDE+I+YV  KYG   VAQIITF  + +KA L+DV R L +PY++ D
Sbjct: 404 SMPDIDTDFCIERRDEMIQYVTEKYGEANVAQIITFNRMTSKAVLKDVARVLDIPYAESD 463

Query: 474 RLCKLIPNDPAHPVSLQAIADDSR----FREARLADPSVDRLLEISQKLEGLYRHASTHA 529
           ++ K+IP     P  L+ +  D      F+E    +P V   L+++ ++EG  +    HA
Sbjct: 464 KMAKMIPVSRGKPTPLKVMISDETPEPAFKERYDTEPHVRHWLDMAIRIEGTNKTFGVHA 523

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
           AG+VI  +PL ++VP+ ++    + +TQ+ M+ +E  GL+K DFLGL+ LT L+K+ D +
Sbjct: 524 AGVVISSQPLDEVVPLQKNNDGAV-ITQYFMEDLESLGLLKMDFLGLRNLTTLKKTADLI 582

Query: 590 AQ-RGVKVDLSLIPFDDHETYH-------------LLTTKGTL------GIFQLESSGMR 629
            Q +G+++DL  +P D+ +                +L T G L      GIFQLESSGM+
Sbjct: 583 KQNQGIEIDLDQLPLDERKALQIRAKGEHKKLPPDILKTHGLLEEGDLEGIFQLESSGMK 642

Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
           Q ++ ++P  IEDI ++++LYRPGP+D   I ++  RK+G+E I   HPL++P+LKET  
Sbjct: 643 QIVKELKPSGIEDISSILALYRPGPLDAGLIPLFIGRKHGREPIRYDHPLLEPILKETYA 702

Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
           V++YQEQ+M++AQ L+GYSL EAD+LRRAMGKK   EM KQ+E FI GA+KNG+ K IA 
Sbjct: 703 VLVYQEQIMKMAQDLAGYSLGEADLLRRAMGKKKASEMQKQREMFIDGAAKNGVEKRIAE 762

Query: 748 NIFELLAKFADY 759
           N+FE +  FA+Y
Sbjct: 763 NLFEQMVNFAEY 774


>gi|323466669|gb|ADX70356.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            helveticus H10]
          Length = 1041

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 340/1028 (33%), Positives = 550/1028 (53%), Gaps = 52/1028 (5%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    ++++++        A+ + D N  +  + F + A  AGI+P++G 
Sbjct: 12   LQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLADVNVTYGLVNFYELAKKAGIKPLLGM 71

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQGKQSVRIC 132
            QL ++          G         ++    T  GY  L+ L S + +L D G+ +  + 
Sbjct: 72   QLRLN----------GLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLT 121

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +   + L+++   +   +  + F  + Q+    +   K+L  D LY+ +  +   
Sbjct: 122  LKDLSKYLADLLLIVPANTKSEL-LSLFETNKQLGSDLIRDLKELTSD-LYLGVYANPSM 179

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD- 251
              Y +  V  L+   +LPL+AT +S +L+  D      L A+A    + Q   P    + 
Sbjct: 180  QNYIDY-VRSLSKQFDLPLLATEDSEYLNPHDQFLQKTLRAIATGDKI-QDALPLAKQEG 237

Query: 252  -HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             HYL    +++  +   DL +A+ NT ++A +C+  +    P+LP++ +K+        E
Sbjct: 238  SHYLVEAEQLLQRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKF----ATSE 293

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L   A  GL+ R  Q  I       +Y++RL++EL VI +M F  YFLIV D I +  
Sbjct: 294  EYLHYLAQTGLQQRFGQNKIPA-----EYQKRLNYELRVINQMGFDDYFLIVWDVINYCH 348

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS  GS+ +Y+L IT++DP+ ++LLFERFLNP R  MPD D+D    +RD
Sbjct: 349  RVQITTGPGRGSACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRD 408

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   ++ +    IP      ++
Sbjct: 409  TVIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWADAIPYSKGK-IT 467

Query: 489  LQAIADDSRFREARL---ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            L+     SR  E RL   A P    L + +  LEGL RH S HAAG+VI D  ++ +  +
Sbjct: 468  LKEAYQQSR--ELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGL 525

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                   +PVTQ   K++E  GL+K DFLGL+ LT+L   L+ + Q+G+K+D + IP +D
Sbjct: 526  QAGPLG-IPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLIRQQGIKIDPNQIPLND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L     T  +FQ ES G+RQ L  + PD  ED++A+ ++YRPGP+ NI  +  RK
Sbjct: 585  AQTLQLFQQGKTDAVFQFESVGIRQVLRKLHPDNFEDLVAVNAIYRPGPMQNIDAFVRRK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ +
Sbjct: 645  NGQEAVRYPDPSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVI 704

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +++K +FI+   K G +K IA  +++ + +FA+YGFN+SHA AY  I+Y  A++K HYP 
Sbjct: 705  EQEKGKFIADTIKQGHTKAIAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPA 764

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  A +        K + +   A++ NI+I+PP +N   +++ + + +I   L AIKG+
Sbjct: 765  AFYTAMLNSAAG--AKAQDYIMQAQEANIKILPPDINHSSLEYTLKNKQILVGLKAIKGL 822

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                AR I  A   KP+ SL DF  R+D K L    +++L+ AGA D    +R +LL + 
Sbjct: 823  RVDFAREI--ADNTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNC 880

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D I    Q   +N +       +   G    K   E    E +++    E++VLGF  + 
Sbjct: 881  DEIIANVQLTGRNIS------LSEILGNAPLKPADEPTGAEKAAM----EEKVLGFSTTT 930

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             PL   +   +K   +   +      G  +     ++  +Q +T+ G  + + +F++ + 
Sbjct: 931  SPLIAVQKFAQKFNSRPLNQFQLNESGVGV---GKLIRFKQIRTKNGKNMAFASFADTSG 987

Query: 1026 EYEANFFP 1033
            E E   FP
Sbjct: 988  EQEVVIFP 995


>gi|166366657|ref|YP_001658930.1| DNA polymerase III subunit alpha [Microcystis aeruginosa NIES-843]
 gi|166089030|dbj|BAG03738.1| DNA polymerase III alpha subunit [Microcystis aeruginosa NIES-843]
          Length = 874

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 319/792 (40%), Positives = 480/792 (60%), Gaps = 61/792 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+     QPAIA+TD   ++ A+E  +     GI+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPALIDRAIELGQPAIALTDHGVMYGAIELIKTCRNKGIKP 61

Query: 70  IIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QG 125
           IIG ++ +   D++ NL+     +         V+L    +GY+ L++L +   L   QG
Sbjct: 62  IIGNEMYVVNGDIEVNLRHRKYHQ---------VVLAKNTQGYKNLVKLTTISNLKGIQG 112

Query: 126 KQS-VRICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
           K    R C++   LQ+   EGLI+ +    G I +A   N+ ++A++    +KKLFGD  
Sbjct: 113 KGIFARPCINKELLQQY-HEGLIVTSACLGGEIPQAILANNRKLAKETAKWYKKLFGDDF 171

Query: 183 YVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           Y+ +Q H    DR    ++V++A    + +VATN+S F+S  D EAHD L+ +  + +++
Sbjct: 172 YLEIQDHGSKEDRIVNVEIVKIAKELGIKVVATNDSHFISCYDVEAHDALLCIQTAKLIT 231

Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSD-LPE-----ALENTVEIARRCSFILQVHAPILPRF 295
           +  R R +   YLK+  EM  +F D LPE     A+ NT+E+A +       + P LP +
Sbjct: 232 EDKRLRYSGTEYLKSADEMRLLFRDHLPEDVIEEAINNTLEVAEKVEPYNIFNEPRLPNY 291

Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKF 353
                       ++ +   A  GL  RL         H  +  Y++RL++EL ++ +M F
Sbjct: 292 PVPAG----HTADSYVEEIAWLGLLERLK----CPSRHEIEPVYKERLEYELKMLQKMGF 343

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
           S YFL+V D+I++A+ ++IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP+R 
Sbjct: 344 STYFLVVWDYIKYARDHDIPVGPGRGSAAGSLVAYSLKITNIDPVHHGLLFERFLNPERK 403

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
           SMPD D DFC +RRDE+I+YV  KYG   VAQIITF  + +KA L+DV R L +PY++ D
Sbjct: 404 SMPDIDTDFCIERRDEMIQYVTEKYGEANVAQIITFNRMTSKAVLKDVARVLDIPYAESD 463

Query: 474 RLCKLIPNDPAHPVSLQAIADDSR----FREARLADPSVDRLLEISQKLEGLYRHASTHA 529
           ++ K+IP     P  L+ +  D      F+E    +P V   L+++ ++EG  +    HA
Sbjct: 464 KMAKMIPVSRGKPTPLKVMISDETPEPAFKERYDTEPHVRHWLDMAIRIEGTNKTFGVHA 523

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
           AG+VI  +PL ++VP+ ++    + +TQ+ M+ +E  GL+K DFLGL+ LT L+K+ D +
Sbjct: 524 AGVVISSQPLDEVVPLQKNNDGAV-ITQYFMEDLESLGLLKMDFLGLRNLTTLKKTADLI 582

Query: 590 AQ-RGVKVDLSLIPFDDHETYH-------------LLTTKGTL------GIFQLESSGMR 629
            Q +G+ +DL  +P D+ +                +L T G L      GIFQLESSGM+
Sbjct: 583 KQNQGIDIDLDQLPLDERKALQIRAKGEHKKLPPDILKTHGLLEEGDLEGIFQLESSGMK 642

Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
           Q ++ ++P  IEDI ++++LYRPGP+D   I ++  RK+G+E I   HPL++P+LKET  
Sbjct: 643 QIVKELKPSGIEDISSILALYRPGPLDAGLIPLFIGRKHGREPIRYDHPLLEPILKETYA 702

Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
           V++YQEQ+M++AQ L+GYSL EAD+LRRAMGKK   EM KQ+E FI GA+KNG+ K IA 
Sbjct: 703 VLVYQEQIMKMAQDLAGYSLGEADLLRRAMGKKKASEMQKQREMFIDGAAKNGVEKRIAE 762

Query: 748 NIFELLAKFADY 759
           N+FE +  FA+Y
Sbjct: 763 NLFEQMVNFAEY 774


>gi|21234220|ref|NP_639831.1| DNA polymerase III subunit alpha [Streptomyces coelicolor A3(2)]
 gi|13620707|emb|CAC36747.1| putative DNA polymerase III, alpha chain (EC 2.7.7.7) [Streptomyces
            coelicolor A3(2)]
          Length = 1213

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 343/1096 (31%), Positives = 565/1096 (51%), Gaps = 94/1096 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-IQ 68
            SFVHL  H+ YS+L+GA  L  +  ++     PA+A++D  N+F A EF Q A   G ++
Sbjct: 17   SFVHLHNHTEYSMLDGAQKLKPMFAEVDRQGMPAVAMSDHGNMFGAYEFQQVAKGFGSVK 76

Query: 69   PIIGCQLDI-----------------------DMQDNLKMTNQGKTPFPTVPSIVLLVST 105
            PIIG +  +                       D + +  ++  G+        + +  + 
Sbjct: 77   PIIGIEAYVAPSSRRNRRQEFWGPGGQRAVSDDGEGSKDVSGGGR-----FTHMTMWATG 131

Query: 106  AEGYQRLIELVSRMYLLDQ---GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
            A+G + L  + +      Q   GK   R+ +  + E   EG++  TG  SG +      N
Sbjct: 132  AQGLRNLFYMSTEASYTGQFPAGKP--RMDMELIAE-HAEGVVATTGCPSGAVQTRLRLN 188

Query: 163  SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220
                A +    ++ +FG +  ++ L  H    +R     +++LA    LPL+ATN++ ++
Sbjct: 189  QYDEARQVASAYQDIFGKENYFLELMDHGLSIERDVREGLLRLARELSLPLLATNDAHYI 248

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
             E   +AHD L+ +      + + R R +   +YLK  +EM ++F++LPEA +NT+ IA 
Sbjct: 249  HESQADAHDNLLCIGVGKNKADEKRFRFSGSGYYLKTAAEMRALFAELPEACDNTLLIAE 308

Query: 280  RCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
            R     +V   +  +P+F +    + Q   E+ LR + + GL +R             + 
Sbjct: 309  RVGSYDEVFDNVDEMPQFPDVPDGETQ---ESWLRKEVLTGLAMRYGDPV------PTEV 359

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             +R + E++VI  M FS YFL+VAD  ++A+ N +PVGPGRGS  GS+ AYA  IT++ P
Sbjct: 360  LERFETEMSVIGPMGFSSYFLVVADICKYARDNGVPVGPGRGSATGSIVAYATRITELCP 419

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
            L   LLFERFLNP+R++ PD D+DF   +RD+++RYV  KYG E  A + TFG ++AK A
Sbjct: 420  LEHGLLFERFLNPERINPPDVDLDFDDRQRDKMVRYVTEKYGDEYTAMVNTFGKIKAKNA 479

Query: 458  LRDVGRALQMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLA 504
            ++D  R L  P+S  +R+ K +P              DP HP   +A       R     
Sbjct: 480  IKDSSRILGYPFSHGERITKALPPDIMGKSIPLDGIFDPEHPRHGEA----GEIRTMYEN 535

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            +P V  +++ ++ +EGL R    HAA +++    L+  +P++      + +T F+    E
Sbjct: 536  EPDVKTVIDTARGVEGLTRGTGVHAAAVILSKTRLTDRIPLHMRASDGVKITGFDYPSCE 595

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV----------DLSLIPFDDHETYHLLT 613
              GL+K DFLGL+ L ++  +++ + + RGV++             +IP DD +T+ LL 
Sbjct: 596  NMGLVKMDFLGLRNLGVIDHAIENIRENRGVRLATVDPMDGDSGTVVIPLDDKKTFELLG 655

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKI 671
               T G+FQL+  GMR  L+ M+P   EDI A ++LYRPGP+  +    Y  R+NGK++ 
Sbjct: 656  RGDTFGVFQLDGGGMRALLKLMEPSRFEDIAAALALYRPGPMAANAHTNYALRQNGKQEP 715

Query: 672  VSIHP----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
              IHP    ++DP+L  T  ++I+QEQ+M IA++L+GY+L  AD+LRRAMGKK  E +  
Sbjct: 716  DPIHPELKEVLDPILGSTHHLLIFQEQIMAIARILAGYTLGGADMLRRAMGKKKPEVLAA 775

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            + E+F  G   N  S+     I++++  F+ Y FNKSH A Y ++SY TA++K +YP E+
Sbjct: 776  EWEKFHDGMKANDYSEEAIKAIWDVMLPFSGYAFNKSHTAGYGLVSYWTAYLKANYPAEY 835

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +AA +T   D+ +K   +  DAR+  + ++PP VN    +F    + + + L +++ VG 
Sbjct: 836  MAALLTSVGDDKDKAGIYLADARKLGVTVLPPDVNESVAEFTAVGDDVRFGLRSVRNVGD 895

Query: 848  TTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 ++ A   K  F S  DF  + D   LN+R +ESL+ AGA D  G++R  L    +
Sbjct: 896  NVIDTVITARKTKGKFTSFADFLDKADLPALNKRAVESLIKAGAFDSLGHTRRGLCAVHE 955

Query: 907  NIQKYAQWVEKNRTNKHENIFA--------HEKGTFSDKITLEKFSVENSSVRFENEQRV 958
                    ++K      +++FA          +  F   + ++        +    E+ +
Sbjct: 956  TAIDAVVPLKKAAAYGQDDLFAGLGGGTGDDGESGFGLDVRIDDGEWSRKQL-LSTEREM 1014

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGSRIGW 1017
            LG Y S HPLD  + IL         + +A+ R    +RL+ ++   Q K T++G+    
Sbjct: 1015 LGMYVSAHPLDGTEHILAAHRDTTIPDLLASGRTEGTVRLSGLITGVQNKVTKQGNAWAI 1074

Query: 1018 VTFSEPAKEYEANFFP 1033
            V  ++     E  FFP
Sbjct: 1075 VNLADRDGTIEVLFFP 1090


>gi|161507446|ref|YP_001577400.1| DNA polymerase III alpha subunit [Lactobacillus helveticus DPC 4571]
 gi|160348435|gb|ABX27109.1| DNA polymerase III alpha subunit [Lactobacillus helveticus DPC 4571]
          Length = 1035

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 340/1028 (33%), Positives = 550/1028 (53%), Gaps = 52/1028 (5%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    ++++++        A+ + D N  +  + F + A  AGI+P++G 
Sbjct: 6    LQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLADVNVTYGLVNFYELAKKAGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQGKQSVRIC 132
            QL ++          G         ++    T  GY  L+ L S + +L D G+ +  + 
Sbjct: 66   QLRLN----------GLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +   + L+++   +   +  + F  + Q+    +   K+L  D LY+ +  +   
Sbjct: 116  LKDLSKYLADLLLIVPANTKSEL-LSLFETNKQLGSDLIRDLKELTSD-LYLGVYANPSM 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD- 251
              Y +  V  L+   +L L+AT +S +L+  D      L A+A    + Q   P    + 
Sbjct: 174  QNYIDY-VRSLSKQFDLLLLATEDSEYLNPHDQFLQKTLRAIATGDKI-QDALPLAKQEG 231

Query: 252  -HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             HYL    +++  +   DL +A+ NT ++A +C+  +    P+LP++ +K+        E
Sbjct: 232  SHYLVEAEQLLQRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKF----VTSE 287

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L   A  GL+ R  Q  I       +Y++RL++EL VI +M F  YFLIV D I +  
Sbjct: 288  EYLHYLAQTGLQQRFGQNKIPA-----EYQKRLNYELRVINQMGFDDYFLIVWDVINYCH 342

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS  GS+ +Y+L IT++DP+ ++LLFERFLNP R  MPD D+D    +RD
Sbjct: 343  RVQITTGPGRGSACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRD 402

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   ++ +    IP      ++
Sbjct: 403  TVIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWADAIPYSKGK-IT 461

Query: 489  LQAIADDSRFREARL---ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            L+     SR  E RL   A P    L + +  LEGL RH S HAAG+VI D  ++ +  +
Sbjct: 462  LKEAYQQSR--ELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGL 519

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                   +PVTQ   K++E  GL+K DFLGL+ LT+L   L+ + Q+G+K+D + IP +D
Sbjct: 520  QAGPLG-IPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLIRQQGIKIDPNQIPLND 578

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L     T  +FQ ES G+RQ L  + PD  ED++A+ +LYRPGP+ NI  +  RK
Sbjct: 579  AQTLQLFQQGKTDAVFQFESGGIRQVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVRRK 638

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ +
Sbjct: 639  NGQEAVRYPDPSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVI 698

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +++K +FI+G  K G +K +A  +++ + +FA+YGFN+SHA AY  I+Y  A++K HYP 
Sbjct: 699  EQEKGKFIAGTIKQGHTKAVAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPA 758

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  A +        K + +   A++ NI+I+PP +N   +++ + + +I   L AIKG+
Sbjct: 759  AFYTAMLNSAAG--AKAQDYIMQAQEANIKILPPDINHSSLEYALKNKQILVGLKAIKGL 816

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                AR I  A   KP+ SL DF  R+D K L    +++L+ AGA D    +R +LL + 
Sbjct: 817  RVDFAREI--ADNTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNC 874

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D I    Q   +N +       +   G    K   E    E +++    E++VLGF  + 
Sbjct: 875  DEIIANVQLTGQNIS------LSEILGNAPLKPADEPTGAEKAAM----EEKVLGFSTTT 924

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             PL   +   +K   +   +      G  +     ++  +Q +T+ G  + + +F++ + 
Sbjct: 925  SPLIAVQKFAQKFNSRPLNQFQLNESGVGV---GKLIRFKQIRTKNGKNMAFASFADTSG 981

Query: 1026 EYEANFFP 1033
            E E   FP
Sbjct: 982  EQEVVIFP 989


>gi|163846593|ref|YP_001634637.1| DNA polymerase III subunit alpha [Chloroflexus aurantiacus J-10-fl]
 gi|222524387|ref|YP_002568858.1| DNA polymerase III subunit alpha [Chloroflexus sp. Y-400-fl]
 gi|163667882|gb|ABY34248.1| DNA polymerase III, alpha subunit [Chloroflexus aurantiacus
           J-10-fl]
 gi|222448266|gb|ACM52532.1| DNA polymerase III, alpha subunit [Chloroflexus sp. Y-400-fl]
          Length = 1248

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 342/947 (36%), Positives = 509/947 (53%), Gaps = 51/947 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL VHS YSLL+G  +   I  + A     +IA+TD   ++ A+EF + A  AGI+PI
Sbjct: 4   FVHLHVHSEYSLLDGYATTKGITQRAAELGMDSIALTDHGVMYGAMEFYEAAKKAGIRPI 63

Query: 71  IGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK- 126
           IG +  +    + D   MT   K  F     ++LL     GY+ L++L +R +L   GK 
Sbjct: 64  IGVEAYMAPGSLSD--PMTKGAKNYF----HLLLLAQNEVGYRNLVKLTTRAHLDGMGKG 117

Query: 127 --QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                RI    L E   EGLI+ +   +G +         + A +    ++ L G DR Y
Sbjct: 118 VFARPRIDRQLL-EAHHEGLIVTSACLAGEVLHYLKAGDRRAAVETAAYYRDLLGPDRYY 176

Query: 184 VNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           + LQ H           ++V++     +PLVAT+++ F+  ED      +MA+  +   +
Sbjct: 177 LELQLHDNTPELEPLNDELVKIGRELGIPLVATSDAHFVRPEDKATQHKIMAMGMNMTYA 236

Query: 242 QKDRPRVTPD--HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEK 298
           +        D  +++ +  +M   F     E LENT  IA  C   L+     LP F   
Sbjct: 237 EFCAREYAMDESYHILSGEQMWERFKRYGTEPLENTRRIADMCRLKLEFGRVQLPVFELP 296

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D      + LR     GL  R        G    +Y  RL +EL+VI +  F  Y L
Sbjct: 297 PGHDAA----SYLRLVCEEGLMRRF------NGQPPAEYMNRLAYELDVINQTGFPDYML 346

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           IV D++++A+   IP  P RGS   S+  YAL ITD+DP++  LLFERFL+P+R+ MPD 
Sbjct: 347 IVWDYVKFARSRGIPCLP-RGSAGASLVLYALGITDVDPVKNKLLFERFLSPERLEMPDI 405

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D DF   RR E++ Y+ +KYG E VAQIIT+G+L AKAA+RD+GR L +   +VDR+ KL
Sbjct: 406 DTDFADSRRQEILDYIADKYGRENVAQIITYGTLGAKAAIRDMGRVLGLDPGEVDRVAKL 465

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
           IP  P      QA+      ++     P +  L++ +QK+EG  R   THA G+V+   P
Sbjct: 466 IPALPVGTTIAQALERVPELKQIYETQPHLRELIDEAQKVEGRMRSVGTHACGVVVSRTP 525

Query: 539 LSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKV 596
           L++LVP+ R  + +  +   F    + K GL+K D LGL  L+++ ++L ++ Q  G ++
Sbjct: 526 LAELVPLQRTTKDENALMAAFEGPTLAKMGLLKMDILGLTNLSVVAEALKYIEQTTGRRM 585

Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            L  IP DD + +  L    T  +FQLES+GM + L  ++P  +ED+ A+V+LYRPGP++
Sbjct: 586 WLDEIPLDDPKVFEALGRGETKNVFQLESAGMTRYLMQLKPTRVEDLYAMVALYRPGPLE 645

Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            I VY   KN   +I  +HP+++P+L +T GVI+YQEQ+MQ+ Q ++ Y+L +A ++ +A
Sbjct: 646 QIPVYIQNKNNPSQIRYLHPVLEPILSDTYGVIVYQEQIMQLLQTVADYTLGQAYIVIKA 705

Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
           + KK +E M + +  F  G  + GISK IA  ++EL+  FA Y FN+ HA  Y ++SYQT
Sbjct: 706 ISKKNRELMAENEAIFKQGCQRKGISKEIADQLWELILPFAGYSFNRPHATLYGLLSYQT 765

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-------------- 822
           AW+K +YPVE++ A +T     +E + K   +AR+  + ++PP VN              
Sbjct: 766 AWLKVNYPVEYMTAVLTGAGGVIEDVTKAALEARRLGVAVLPPDVNRSHKGFTIEPLAQP 825

Query: 823 -TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRR 880
             P V  + G   I + L AIK VG      I+ A  A  PF SLED C+RVD   LN+R
Sbjct: 826 LPPGVTHQRG---IRFGLMAIKNVGEGPVEAIIAAREAGGPFQSLEDLCARVDRHALNKR 882

Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            LESL+ AGALD    +R Q L  LD         +K R     ++F
Sbjct: 883 TLESLIKAGALDSLPGTRRQKLAILDQAVSAGIEAQKAREIGQSSLF 929


>gi|313206116|ref|YP_004045293.1| DNA polymerase iii, alpha subunit [Riemerella anatipestifer DSM
            15868]
 gi|312445432|gb|ADQ81787.1| DNA polymerase III, alpha subunit [Riemerella anatipestifer DSM
            15868]
 gi|315022923|gb|EFT35946.1| DNA polymerase III alpha subunit [Riemerella anatipestifer RA-YM]
 gi|325336439|gb|ADZ12713.1| DNA polymerase III, alpha subunit [Riemerella anatipestifer RA-GD]
          Length = 1550

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 341/1044 (32%), Positives = 554/1044 (53%), Gaps = 94/1044 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------------ 58
            + +   HS +S L+   S+ +++DK  ++Q PA+ + D  N+  A +F            
Sbjct: 248  YFNFHNHSIFSSLQSTTSIGDLIDKAKSNQFPAVGMVDLGNMMGAFKFVSDVEKYNSGVK 307

Query: 59   ---------SQKACAAG------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
                      QKA   G            +  ++GC+  I  +   K   +      T  
Sbjct: 308  KAHQEYLANKQKAEEEGADFNENAPESKELMAVLGCEFYISDRPEQKQFTKDDPDRRT-- 365

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            ++VLL     GY+ L +L S  Y+        R+    + +   + +I +T G  G I  
Sbjct: 366  NVVLLAKNFNGYKNLAKLSSLGYVNGFYFGVPRVSREMVAQY-KDDVIAVTSGIYGDIPD 424

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNN 216
            A      Q  E+R   +K+ FG+  YV LQ H   +    ++V+   A  + + ++A N 
Sbjct: 425  AILNFGEQKGEERFKWWKETFGEDFYVQLQNHGLQEEEHLNEVLLDFADRYNVKILAQNE 484

Query: 217  SLFLSEEDYEAHDVLMAVAH----STVVSQ---KDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            + +  + D    D++  +      ST V +   K +   + + Y+K+  E+   F   P+
Sbjct: 485  TFYTDKSDANIQDIVSCIKDGEKLSTPVGKGFGKRKGLRSQEFYIKDAEELKQCFRQYPD 544

Query: 270  ALENTVEIARRCSFILQVHAPILPRF-------IEKECDDIQKEEENE-LRNKAVAGLEV 321
            A E   E+  +          +LP+F        E++  D  K  EN  LR+    G + 
Sbjct: 545  AFEAYTELLSKFEPYTLKRDVLLPKFDIPEEFQSEEDLKDGGKRGENAYLRHLTYEGAKK 604

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
            R  +          D R+RLDFEL +IA   + GYFLIV DF   A+K  + VGPGRGS 
Sbjct: 605  RYDE-------ITDDIRERLDFELEIIANTGYPGYFLIVQDFCNEARKMGVWVGPGRGSA 657

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            AGS  AY + IT++DP+++ LLFERFLNP+R+SMPD DIDF  + RD +I++V +KYG  
Sbjct: 658  AGSAVAYCIGITNVDPIKYDLLFERFLNPERISMPDIDIDFDDEGRDRIIKWVIDKYGKS 717

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE- 500
             VAQIIT+  L  K+A++D GR L +P  + + + KL+P+ P   ++ +A++   + ++ 
Sbjct: 718  NVAQIITYSVLGGKSAIKDAGRVLDVPIPETNNIAKLVPSVPGMNIA-KALSKYDKLKDE 776

Query: 501  ---------ARLADPSVDR--LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                     A L +P+  R  +L+ ++K+EG  R+   HA G++I    +S LVP+    
Sbjct: 777  DKVLVDEMKAVLDNPNDQRFPVLDSAKKMEGCIRNTGIHACGVIITPEDISNLVPISIAA 836

Query: 550  R-SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHE 607
            + +D+ V+QF+    E AGL+K DFLGL+TLT+++ +L  + +R G+ ++   I  DD +
Sbjct: 837  KDADILVSQFDNSVAESAGLLKMDFLGLRTLTIIKDALKLVKERHGIDINPDEISLDDAK 896

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY L     T+GIFQ ES GM++ +  ++P    D+IA+ +LYRPGPI  I  + NRK+G
Sbjct: 897  TYQLFKEGRTIGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPIKYIPNFINRKHG 956

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E+I+   P  +  LKET G+ +YQEQVM ++Q L+ ++  EAD LR+AMGKK  + ++K
Sbjct: 957  VEEIIYDLPETEEYLKETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKQIDVLNK 1016

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
               +FI G  KN + +     I+     FA+Y FNKSH+  YA+I+YQTA++K +YP E+
Sbjct: 1017 MYPKFIEGGKKNNLDEEKLNKIWNDWKAFAEYAFNKSHSTCYALIAYQTAFLKANYPAEY 1076

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVG 846
            +A+ M+  ++N  +I  F +D R   + ++ P VN     F V D  +I + L AIKG+G
Sbjct: 1077 MASVMSNNINNTAQITMFMEDCRAMGVDVLGPDVNESQYKFSVNDKGQIRFGLGAIKGIG 1136

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQ-- 903
               +  I +  A   F ++ DF  RV   ++N+RV+ESLV AGA D    Y R Q     
Sbjct: 1137 EGPSEAISQERAKGKFKNIYDFFERVTPSQVNKRVVESLVMAGAFDEVDTYHRAQYFDID 1196

Query: 904  -----SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN---- 954
                 +++ + +Y Q  ++++     ++FA     F+++I +E+  +   ++ ++N    
Sbjct: 1197 NSGKTNIEKLIRYGQSFQESKNEVENSLFAD----FAEEIQIEQPKIA-PAMEWQNMHKL 1251

Query: 955  --EQRVLGFYFSGHPLDVYKPILR 976
              E+ ++GFY S HPLD YK   R
Sbjct: 1252 NKEKEIIGFYLSAHPLDEYKYQFR 1275


>gi|282859320|ref|ZP_06268432.1| DNA polymerase III, alpha subunit [Prevotella bivia JCVIHMP010]
 gi|282587900|gb|EFB93093.1| DNA polymerase III, alpha subunit [Prevotella bivia JCVIHMP010]
          Length = 1241

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 360/1063 (33%), Positives = 552/1063 (51%), Gaps = 108/1063 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            ++HL VH+ YS+L+G   +NN++DK   D    +AITD   +F   EF+   CA      
Sbjct: 4    YIHLHVHTHYSILDGQSKINNLVDKAIKDGMKGMAITDHGVMFGIKEFAD-YCAKKNKER 62

Query: 67   -------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSR 118
                    +PI GC++ +  +   K T++ K         +V+L     GY+ LI+LVS 
Sbjct: 63   KANGEEPFKPIFGCEMYVARR---KQTDKVKEMHDNSGYHLVVLAKNYNGYKNLIKLVSN 119

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             ++ D      R     L++   E LI+ T   +G I         + A +  L +K LF
Sbjct: 120  AWV-DGYYYRPRTDREQLEKY-HEDLIVCTACLAGEIPAKIRKGDIEGAREACLWYKNLF 177

Query: 179  GDRLYVNLQRHRGYD----RYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDY 225
            G+  Y+ LQRH   D      RE+          ++Q +  + + LV TN+S F  +E  
Sbjct: 178  GEDFYLELQRHEVTDPTLIANREAYPLQQQVNKVLMQFSKEYGIKLVCTNDSHFEDKETA 237

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            EAHD L+ ++ +  +    R R +   + K R EM  +F D+PEA+ NT+EI  +     
Sbjct: 238  EAHDHLLCLSTNEDLDDPKRMRYSKQEWFKTREEMNQVFEDVPEAMANTIEILNKVEMYN 297

Query: 286  QVHAPILPRF-------IEKEC------DDIQKE------EENEL--------------- 311
              H PI+P F        E+E       +D+ KE       EN L               
Sbjct: 298  IDHGPIMPFFPIPEDFGTEEEWRQKFSEEDLLKEFTSDENGENPLPEDEAKKVIERLGGY 357

Query: 312  ----RNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFI 364
                R K  A    +L+     + Y  Q   +   R+ FEL+V+  M F GYFLIV DFI
Sbjct: 358  EKIYRIKFEADYLAKLSYDGAKRLYGDQLSEEVDSRIRFELHVMKTMGFPGYFLIVQDFI 417

Query: 365  QWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
              A+    + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF 
Sbjct: 418  NAAENELGVIVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDTDFD 477

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D R +V+++V +KYGHE  A IIT+ ++  K +++DV R  ++P  + + LCK IP+  
Sbjct: 478  DDGRGKVLQWVMDKYGHENCAHIITYSTMATKNSIKDVARVEKLPLDRSNALCKAIPDRL 537

Query: 484  AHPVSLQ---AIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPL 539
               + +    AI+     +EA +++   +R  ++ ++ LEG  R    HA G +I   P+
Sbjct: 538  PDGLKMNLKNAISCTPMLQEAMVSENERERNTIKYAKMLEGTVRGTGIHACGFIICRNPI 597

Query: 540  SQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-G 593
               VP+      D     +PVTQ++   IE  GLIK DFLGLKTL+ L+++   + Q  G
Sbjct: 598  DDWVPVSTATDPDYPDQKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVIKQTTG 657

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             ++D+  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +LYRPG
Sbjct: 658  KEIDIEKIPIDDELTYQLYQKGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNALYRPG 717

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  +  RK+    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+D L
Sbjct: 718  PMDYIPDFIKRKHDPTLVQYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESDAL 777

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+AMGKK K  +D  K +FI    +NG    +   I+    KFA Y FNKSHA  Y+ ++
Sbjct: 778  RKAMGKKKKNIVDAMKPKFIKQGQENGHDPKVLEKIWSDWEKFASYAFNKSHATCYSWVA 837

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD- 832
            YQTA++K HYP E++AA MT     + +I K  ++ +   I+ + P VN   + F V   
Sbjct: 838  YQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKALKIETLGPDVNESQIGFGVNKR 897

Query: 833  NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I + L+AIKG+GT  A +I+ E   + P+  + DF  RVD   +NR+V+E+L ++G  
Sbjct: 898  GEIRFGLSAIKGIGTGAAENIVKERETNGPYKDIFDFVERVDLSSINRKVIENLAYSGGF 957

Query: 892  DCFGY-----------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
            D  G            S+ +    LD + +Y Q  + ++     ++F    G F D I +
Sbjct: 958  DSLGTITRREEYFGVNSKGEAF--LDTLLRYGQLYQTSKAEAANSLF----GGF-DSIPV 1010

Query: 941  EKFSVENSSV-----RFENEQRVLGFYFSGHPLDVYKPILRKM 978
             + +V  +       +   E+ ++G Y S HPLD +  +L  +
Sbjct: 1011 ARPAVPPAEAWANIEKLNKERELVGIYLSAHPLDEFSVVLNHL 1053


>gi|301066411|ref|YP_003788434.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang]
 gi|300438818|gb|ADK18584.1| DNA polymerase III, alpha subunit [Lactobacillus casei str. Zhang]
          Length = 1098

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 338/1038 (32%), Positives = 549/1038 (52%), Gaps = 79/1038 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L++++    +    AIA+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q+ ID                    ++++    +GY +L+++ +++ L        
Sbjct: 62   LLGMQIAIDDA-----------------KLLVIAKNNQGYHQLLKISTQIMLATS----- 99

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               +++   +   GL+ +T   S P   A   N    A   L        + +YV L   
Sbjct: 100  --PVAFADLLPLTGLVAITLPDS-PFSAAVVANDHDRAVAFLQELDNKQPEAVYVGLD-- 154

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               + + ++ +   A + +L L+A  N L+    D     V+ A+   + ++ +D P +T
Sbjct: 155  ---EAHLDTPLPAFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRD-PVLT 210

Query: 250  P--DHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 +LK  ++  + F  + L  A++NT +IA +    +    P LP +          
Sbjct: 211  DAGPWWLKPPADASAPFVAAGLQAAVDNTAQIADQTDVTITFKQPQLPHY---------- 260

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFLIVA 361
            +  ++L +K       +LAQ  +A  +H Q     Y+QRL +EL+VI +M F+ YFL+V 
Sbjct: 261  QTPDQLASKDYL---TKLAQEGLANRFHDQPIPTTYQQRLQYELDVIIKMGFADYFLVVW 317

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A K NI  G GRGS AGS+ +YAL IT++DP+ + LLFERFLNP R  MPD D+D
Sbjct: 318  DVMNYAHKVNIMTGAGRGSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLD 377

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
               +RR E+I+YV +KYG   +AQIITFG+  AK A+RDV R   M   + +   + IPN
Sbjct: 378  IPDNRRGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPN 437

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 + L+   D S+  +  +AD   +R+L + +  LEGL RH STHAAGIV+ + PL+
Sbjct: 438  --LLHMDLKTAYDQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLT 495

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
              V + +     L  TQ     +E  GL+K DFLGLK L +L  +  F+ +  G   D  
Sbjct: 496  DTVAL-QPSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPK 554

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP +D  T  L     T G+FQ ES+G++  L  ++P   ED++A+ +LYRPGP++NI 
Sbjct: 555  QIPLNDQPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENID 614

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RKNG+E I    P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM K
Sbjct: 615  TFIARKNGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSK 674

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    +  ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+++++  A++
Sbjct: 675  KKSSVLAAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYL 734

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K H P  F AA M   M+N+ K++ + Q+A+   + ++ P +NT    FK+ D +I + L
Sbjct: 735  KVHDPAAFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGL 794

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             ++KG+    +  I  A  + PF    D   R++ K L     + L+ AGA D F  +R 
Sbjct: 795  LSVKGMRRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRA 854

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS----DKITLEKFSVENSSVRFENE 955
            Q + +LD +    +            +  ++ G FS      I + +     +  R E E
Sbjct: 855  QTIANLDELINSVK------------LAGNDVGLFSVLAPKPIVVPEMP---AGERLEEE 899

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
              VLG Y SGHP+D Y P+  +  +      V    G  + +  +V   ++ +T+ G  +
Sbjct: 900  ANVLGVYLSGHPVDKYAPLKTQYTLVNV---VDLAEGRTVDILLLVRHIKRIRTKTGKPM 956

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +         FP
Sbjct: 957  AFVDGQDATGTVSLTVFP 974


>gi|239631558|ref|ZP_04674589.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239526023|gb|EEQ65024.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 1098

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 338/1038 (32%), Positives = 549/1038 (52%), Gaps = 79/1038 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L++++    +    AIA+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q+ ID                    ++++    +GY +L+++ +++ L        
Sbjct: 62   LLGMQIAIDDA-----------------KLLVIAKNNQGYHQLLKISTQIMLATS----- 99

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               +++   +   GL+ +T   S P   A   N    A   L        + +YV L   
Sbjct: 100  --PVAFADLLPLTGLVAITLPDS-PFSAAVVANDHDRAVAFLQELDNKQPEAVYVGLD-- 154

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               + + ++ +   A + +L L+A  N L+    D     V+ A+   + ++ +D P +T
Sbjct: 155  ---EAHLDTPLPAFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRD-PVLT 210

Query: 250  P--DHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 +LK  ++  + F  + L  A++NT +IA +    +    P LP +          
Sbjct: 211  DAGPWWLKPPADASAPFVAAGLQAAVDNTAQIADQTDVTITFKQPQLPHY---------- 260

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFLIVA 361
            +  ++L +K       +LAQ  +A  +H Q     Y+QRL +EL+VI +M F+ YFL+V 
Sbjct: 261  QTPDQLASKDYL---TKLAQEGLANRFHDQPIPTTYQQRLQYELDVIIKMGFADYFLVVW 317

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A K NI  G GRGS AGS+ +YAL IT++DP+ + LLFERFLNP R  MPD D+D
Sbjct: 318  DVMNYAHKVNIMTGAGRGSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLD 377

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
               +RR E+I+YV +KYG   +AQIITFG+  AK A+RDV R   M   + +   + IPN
Sbjct: 378  IPDNRRGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPN 437

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 + L+   D S+  +  +AD   +R+L + +  LEGL RH STHAAGIV+ + PL+
Sbjct: 438  --LLHMDLKTAYDQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLT 495

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
              V + +     L  TQ     +E  GL+K DFLGLK L +L  +  F+ +  G   D  
Sbjct: 496  DTVAL-QPSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPK 554

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP +D  T  L     T G+FQ ES+G++  L  ++P   ED++A+ +LYRPGP++NI 
Sbjct: 555  QIPLNDQPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENID 614

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RKNG+E I    P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM K
Sbjct: 615  TFIARKNGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSK 674

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    +  ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+++++  A++
Sbjct: 675  KKSSVLAAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYL 734

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K H P  F AA M   M+N+ K++ + Q+A+   + ++ P +NT    FK+ D +I + L
Sbjct: 735  KVHDPAAFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGL 794

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             ++KG+    +  I  A  + PF    D   R++ K L     + L+ AGA D F  +R 
Sbjct: 795  LSVKGMRRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRA 854

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS----DKITLEKFSVENSSVRFENE 955
            Q + +LD +    +            +  ++ G FS      I + +     +  R E E
Sbjct: 855  QTIANLDELINSVK------------LAGNDVGLFSVLAPKPIVVPEMP---AGERLEEE 899

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
              VLG Y SGHP+D Y P+  +  +      V    G  + +  +V   ++ +T+ G  +
Sbjct: 900  ANVLGVYLSGHPVDKYAPLKTQYTLVNV---VDLAEGRTVDILLLVRHIKRIRTKTGKPM 956

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +         FP
Sbjct: 957  AFVDGQDATGTVSLTVFP 974


>gi|56964489|ref|YP_176220.1| DNA polymerase III alpha subunit DnaE [Bacillus clausii KSM-K16]
 gi|56910732|dbj|BAD65259.1| DNA polymerase III alpha subunit DnaE [Bacillus clausii KSM-K16]
          Length = 1095

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 350/1024 (34%), Positives = 560/1024 (54%), Gaps = 68/1024 (6%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75
            V+S YSLL+    ++ ++         A+++TD + L+ A+ F Q    AG++P++G ++
Sbjct: 8    VYSEYSLLQSTNRVDELVQAAKEAGYTALSLTDRHVLYGAVPFFQSCRKAGLKPLLGLEV 67

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
             + + + +            +P + ++    EGY++L+   + +    Q KQ+     +W
Sbjct: 68   TVRLDEEI------------IP-VRMVAKNEEGYRQLVAHSTSLGF--QTKQAAIELETW 112

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY 195
             +   T   + +          AF       A+   L F +     L   ++   G    
Sbjct: 113  -KANSTACFVFIP-------KEAFV-----AAKGNWLHFWERLAGGLEAFIELAGGES-- 157

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
             + +++Q A  H++P VA   + FL +ED   + ++ A+   T  +  +        +L 
Sbjct: 158  -DHELIQFANAHQIPCVAAPPTRFLRKEDAPVYQLVRAIGAGTTTTHLELEEGWQRWHLP 216

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE-LRNK 314
              + +   F +  +AL     +A +    L    P +P +     D +  E+ ++ L   
Sbjct: 217  TANSLKERFPE--KALLQARALAEKVEPYLPEEKPRIPAY-----DGLTVEQADKRLETL 269

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
               GL+ R    ++       +  +RL+ EL +IA   +S YFLIVADF+ +AKK+ I  
Sbjct: 270  CQQGLKARYKAVSV-------EAERRLEHELAIIAERGYSSYFLIVADFVGYAKKSGILT 322

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
            GPGRGS A S+ AY L ITD+DPL   LLFERFLNP+R S+PD D+DF   RRDEVI YV
Sbjct: 323  GPGRGSSASSIVAYTLFITDVDPLAHDLLFERFLNPERASLPDIDVDFPDYRRDEVIAYV 382

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK-LIPNDPAHPVSLQAIA 493
            + ++GH+RVAQ++TFG+  A+AA+RDVG+AL + ++ VDR+ K LIP      +SL    
Sbjct: 383  RERFGHDRVAQVLTFGTFAARAAIRDVGKALSIRHTFVDRVAKSLIPAS----LSLNEAQ 438

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            +   F+   L  P +D LL  ++++EGL RHASTHAAG++I D+PL+    +   +    
Sbjct: 439  EKGVFK--GLESPELDELLFFAKQIEGLPRHASTHAAGVIISDKPLNNKTALQLGIDGH- 495

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             VTQ +M  + + GL+KFDFLGL+ LTLL++ L  + Q  GV ++L  IP +D  T+ LL
Sbjct: 496  AVTQADMDSLARLGLVKFDFLGLRNLTLLERMLKVIEQEEGVALNLQHIPLNDKATFQLL 555

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
                + GIFQLES+GMRQ L+ +QP   EDI+A  +LYRPGP+  I  Y   K+G  + +
Sbjct: 556  QQGKSTGIFQLESAGMRQVLKQLQPSQFEDIVATSALYRPGPMAFIPEYIRGKHGHTQAI 615

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
              H  + P+++ T GV++YQEQ+MQ+ Q  + YSL+EAD+ RRA+ KK  + + +++ +F
Sbjct: 616  VPHESLRPIVEPTFGVLVYQEQIMQVVQATANYSLAEADLFRRAISKKQHDVIIQERHQF 675

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I  A +NG     A  IF L+ +FA+YGF KSHA AY+ ISY  A+++ H+P  F AA  
Sbjct: 676  IHRAVENGFLPEEAEAIFSLIERFANYGFPKSHATAYSFISYWLAYLRVHFPAAFFAALF 735

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +    N EK+  +  +A++  I+++PPSV    + F++ + +I + L  I GV       
Sbjct: 736  SSVWQNHEKLYSYINEAKKEGIRVLPPSVCKSGLLFELENGQIRFGLLPISGVNVQAVNE 795

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            I+         +L  F + V S  +N+RV+E+L+ AGALD FG SR  LL +LD  + + 
Sbjct: 796  IISKRRKNSDSNLFMFYAHVASTAVNKRVMEALIKAGALDEFGQSRATLLGNLDKAEAF- 854

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN---EQRVLGFYFSGHPLD 969
              VE+ R+ K     A   G F+ K  +  +     S + E+   E+ VLGFY SGHP++
Sbjct: 855  --VEQVRSFK-----ASSGGLFTIKPAVPAYLDVTPSTKMEDLEGEREVLGFYLSGHPIE 907

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 L   G     E + + +   +R+A MV+  ++  T+KG  + ++T S+ + E   
Sbjct: 908  NELERLAPFGRIPLAECIPSRK--PVRIAGMVIDVKKIVTKKGEAMAFLTLSDESGECSC 965

Query: 1030 NFFP 1033
              FP
Sbjct: 966  VAFP 969


>gi|302544658|ref|ZP_07297000.1| DNA polymerase III, alpha subunit [Streptomyces hygroscopicus ATCC
            53653]
 gi|302462276|gb|EFL25369.1| DNA polymerase III, alpha subunit [Streptomyces himastatinicus ATCC
            53653]
          Length = 1180

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 356/1080 (32%), Positives = 548/1080 (50%), Gaps = 81/1080 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+GA  L ++           IA+TD  NL  A +F Q+A AA I PI
Sbjct: 9    FTHLHVHTQYSLLDGAARLKDMFKACQQMGMSHIAMTDHGNLHGAYDFFQQATAAAITPI 68

Query: 71   IGCQLDI---------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            IG +  +                 Q    ++  G     T+       +   G   L  L
Sbjct: 69   IGIEAYVAPESRRSKRKVRWGQPHQKRDDVSGSGGYTHKTI-----WAADRTGLHNLFRL 123

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S  Y     ++  R+    + E    GLI  TG  SG +           A K    ++
Sbjct: 124  SSDAYAHGWLQKWPRMDKEVIAEHAA-GLIASTGCPSGEVQTRLRLGQFDEALKAASAYQ 182

Query: 176  KLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +FG DR ++ L  H    +R     ++++     +P + TN+S +    + +AHD L+ 
Sbjct: 183  DIFGRDRYFLELMDHGIEIERRVRDGLLEVGRKLGIPPLVTNDSHYTYAHESQAHDALLC 242

Query: 234  VAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFI-LQVHA 289
            +     ++  DR R     +YLK+  EM +I S     E   NT+ +A +          
Sbjct: 243  IQTGKSLAVADRFRFDGTGYYLKSADEMYAIDSSDAWQEGCRNTLLVAEQVDVTGWFAKR 302

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
             ++PRF   E       E    R +   G+  R   G        +D  +   +E++VI 
Sbjct: 303  DLMPRFDVPEG----YTEVTWFREEVRRGMARRFPGGV------PEDREKLAAYEMDVII 352

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFL+VADFI WAK N I VGPGRGS AGS+ +YAL ITD+DP+   L+FERFLN
Sbjct: 353  QMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVSYALGITDLDPVEHGLIFERFLN 412

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G+++AK A++D  R L  PY
Sbjct: 413  PERVSMPDVDIDFDERRRGEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPY 472

Query: 470  SQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +  DR+ K +P              DP HP   +A       R     DP V ++++ ++
Sbjct: 473  AMGDRITKAMPADVFGKGIPLSGITDPEHPRYGEA----GEVRSMYEGDPDVKKVIDTAR 528

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             +EGL R    HAAG+++   P+   VP++      + +TQ++    E  GL+K DFLGL
Sbjct: 529  GVEGLVRQMGVHAAGVIMSSEPVVDHVPVWVRHTDGVTITQWDYPTCESLGLLKMDFLGL 588

Query: 577  KTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            + LT++  ++  + A +G+ + L  +P DD  T+ LL    TLG+FQ + S MR  L  M
Sbjct: 589  RNLTIMDDAVKLVRANKGIDLKLLDLPLDDPTTFALLGRGDTLGVFQFDGSAMRSLLRLM 648

Query: 636  QPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVI 689
            +P   EDI A+ +LYRPGP  +++ + Y  RKNG+++I  IHP ++  LKE    T G++
Sbjct: 649  KPSHFEDITAVTALYRPGPMGMNSHINYALRKNGQQEITPIHPGVEDALKEVLDITYGLV 708

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQV + AQ+L+GYSL +AD+LRRAMGKK +E +DK+   F  G    G S      +
Sbjct: 709  VYQEQVQKAAQVLAGYSLGQADLLRRAMGKKKQEVLDKEFIPFRDGCRARGYSDDAVQAV 768

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +++L  FA Y +NK+HAAAYA++SY TA++K ++P E++AA +T   D+ +K   +  + 
Sbjct: 769  WDVLVPFAGYAYNKAHAAAYALVSYWTAYLKANFPAEYMAALLTSVRDDKDKSAVYLNEC 828

Query: 810  RQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLED 867
            R+  I+++PP VN    DF   GD+ I + L A++ VG      I+    A   + S  D
Sbjct: 829  RKMGIKVLPPDVNESEADFTPRGDDTIVFGLTAVRNVGQNVVDSIIRRRRAAGRYASFPD 888

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F  +V++   N+R +ESL+ AG  D  G++R  L    + +      V++       ++F
Sbjct: 889  FLDKVEAVACNKRTIESLIKAGGFDALGHTRKGLTARYEPMVDTVVAVKRKEAEGQFDLF 948

Query: 928  AHEKGTFSDKITLEKFSVE--------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                G  S         ++          +     E+ +LG Y S HPL   + +L    
Sbjct: 949  GGGYGDGSGDGDSPALGLDVEFPDDEWEKAYLLAQEREMLGLYVSDHPLFGVEHLLSDRA 1008

Query: 980  IKGYEESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                + ++A + G        + +  +V   Q+K T++G+     T  + A   +  FFP
Sbjct: 1009 ----DAAIAQLTGGEHADGAIVTIGGIVSGLQRKMTKQGNAWAIATVEDLAGSLDCLFFP 1064


>gi|254821473|ref|ZP_05226474.1| DNA polymerase III subunit alpha [Mycobacterium intracellulare ATCC
           13950]
          Length = 1177

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 348/1002 (34%), Positives = 541/1002 (53%), Gaps = 59/1002 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFVHL  H+ YS+L+GA  +  +L ++   Q PA+ +TD  N+F A EF   A  AGI+P
Sbjct: 5   SFVHLHNHTEYSMLDGAAKIAPMLAEVDRLQMPAVGMTDHGNMFGASEFYNAATKAGIKP 64

Query: 70  IIGCQLDID----------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
           IIG +  I           +  +    +   +   +   + ++  T  G + L +L S  
Sbjct: 65  IIGVEAYIAPASRFDTRRILWGDPGQKSDDVSGSGSYTHMTMVAETPTGLRNLFKLSSLA 124

Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
               Q  +  R+    + E   EG+I  TG  SG +         + A +    ++++FG
Sbjct: 125 SFEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHDREALESAAKWREIFG 183

Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            D  ++ L  H    ++     ++++     +P +ATN+  +++ +    H+ L+ V   
Sbjct: 184 ADNYFLELMDHGLSIEQRVRDGLLEIGRKLGIPPLATNDCHYVTRDAAHNHEALLCVQTG 243

Query: 238 TVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPI--LP 293
             +S  +R +   D +YLK+ +EM  I+ D +P A ++T+ IA R     +V AP   +P
Sbjct: 244 KTLSDPNRFKFDGDGYYLKSAAEMRRIWDDEVPGACDSTLLIAERVQPYDEVWAPRDRMP 303

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            F   E  D    + + L ++ +AGL  R   G        QDY  R ++E+ VI    F
Sbjct: 304 IFPVPEGHD----QASWLHHEVMAGLARRFPSGV------GQDYIDRAEYEIKVICDKGF 353

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             YFLIVAD I +A+  +I VGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R 
Sbjct: 354 PSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERP 413

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471
           S PD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAAL+D  R    Q  ++ 
Sbjct: 414 SAPDIDIDFDDRRRGEMVRYAADKWGSDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 473

Query: 472 VDRLCKLIPND-PAHPVSLQAIADDS--RFREAR------LADPSVDRLLEISQKLEGLY 522
            DR+ K +P    A  + L  I D +  R++EA         DP V  + + ++ LEGL 
Sbjct: 474 ADRITKALPPPIMAKDIPLSGITDPAHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLI 533

Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
           R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ LT++
Sbjct: 534 RNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTII 593

Query: 583 QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
             +LD + A RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP    
Sbjct: 594 GDALDNIKANRGIDLDLESVPLDDGPTYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEFN 653

Query: 642 DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQV 695
           DI+A+++LYRPGP+       Y +RKNG++ I  IHP L +P+   L ET G+I+YQEQ+
Sbjct: 654 DIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLREILSETYGLIVYQEQI 713

Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           M IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++ +  
Sbjct: 714 MFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTILP 773

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
           FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  I 
Sbjct: 774 FAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGIT 833

Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDS 874
           ++PP VN   V+F      I + L A++ VG      ++     K  F    D+ +++D 
Sbjct: 834 VLPPDVNESLVNFASVGTDIRFGLGAVRNVGANVVGSLISTRNGKGKFTDFSDYLNKIDI 893

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQL-LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
              N++V ESL+ AGA D  G++R  L L   D +           T K E I   +   
Sbjct: 894 AACNKKVTESLIKAGAFDSLGHARKGLFLVHTDAVDSVLG------TKKAEAIGQFDLFG 947

Query: 934 FSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLD 969
             D  T   F+++     +E+      E+ +LG Y SGHPL+
Sbjct: 948 GDDGCTEAVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLN 989


>gi|300778928|ref|ZP_07088786.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
 gi|300504438|gb|EFK35578.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
          Length = 1555

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 338/1041 (32%), Positives = 539/1041 (51%), Gaps = 94/1041 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------------ 58
            + +   HS +S L    S+N+++ K + +  PA+ + D  N+  A +F            
Sbjct: 248  YFNFDNHSVFSTLTATSSINDLIKKASDENFPAVGMVDLGNMMGAFKFVSAVEGANADRA 307

Query: 59   ---------SQKACAAGIQ------------PIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
                      Q+A   G +            P++GC+  I   D  +     K       
Sbjct: 308  KKHKEYLAKKQEAEENGTEFNEEEPVSEPLIPVVGCEFYI--SDRYEQKQFTKDDPDRRT 365

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             +VLL     GY+ L +L S  +L        R+    + +   EG+I LT G  G I  
Sbjct: 366  QVVLLAKDFNGYKNLAKLSSIGFLKGFYFGVPRVSRELIAQY-KEGVIALTSGIMGDIPD 424

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNN 216
            A      Q  E+    +K  F D  YV +Q H+  +    ++V+  LA  + + ++A N 
Sbjct: 425  AILNTGEQKGEELFKWWKDTFEDDFYVQIQNHKLPEEEHLNEVLLYLADKYNVKILAQNE 484

Query: 217  SLFLSEEDYEAHDVLMAVAHSTVVSQ-------KDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            + + +++D    D++  +     ++        K R   T ++Y+K+  E+   F   P+
Sbjct: 485  TFYTNKDDANIQDIVSCIKDGEKLTTPIGKGFGKRRGLATGEYYIKSSDEIKEAFLAYPD 544

Query: 270  ALENTVEIARRCSFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEV 321
            A +   E   +          +LP+F         E E D  ++ E   L +    G + 
Sbjct: 545  AFDAYEEFTAKFKPYTLKRDVLLPKFDIPEEFIHAEDEVDGGKRGEMAYLTHLTYEGAKN 604

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
            R  +  I       + ++RLDFEL VIA   + GYFLIV DF   A+K  + VGPGRGS 
Sbjct: 605  RYGEEGIT-----DEIKERLDFELEVIANTGYPGYFLIVQDFCNEARKMGVWVGPGRGSA 659

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            AGS  AY + IT++DP+++ LLFERFLNP+R+SMPD DIDF  + RD VI++V  KYG  
Sbjct: 660  AGSAVAYCIGITNVDPIKYDLLFERFLNPERVSMPDIDIDFDDEGRDRVIKWVIEKYGQS 719

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL------------ 489
            +VAQIIT+  L  K+A++D GR L +P    + + KLIP+ P   ++             
Sbjct: 720  QVAQIITYSVLGGKSAIKDAGRVLDVPIPDTNNIAKLIPSTPGMNIAKALAKYDKLKPEE 779

Query: 490  QAIADDSRFREARLADPSVDR--LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            Q + D+ R+    L  P   R  +L  ++K+EG  R+   HA G++I    +S LVP+  
Sbjct: 780  QMLVDEMRYV---LESPDDSRHGVLASAKKMEGCIRNTGIHACGVIITPEDVSNLVPVTI 836

Query: 548  DVR-SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
              + +D+ V+QF+    E AGL+K DFLGL+TLT+++ +L  + A+ GV +D  LIP DD
Sbjct: 837  AAKDADILVSQFDNSVAESAGLLKMDFLGLRTLTIIKDALKLVKARHGVDIDPDLIPLDD 896

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +TY L     T+GIFQ ES GM++ +  ++P    D+IA+ +LYRPGPI  I  + NRK
Sbjct: 897  AKTYQLFKEGRTVGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPIKYIPNFINRK 956

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G E+IV   P  +  LKET G+ +YQEQVM ++Q L+ ++  EAD LR+AMGKK  + +
Sbjct: 957  HGIEEIVYDLPETEEYLKETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKQIDVL 1016

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +K   +FI G  KN +++     I+     FA+Y FNKSH+  YA I+YQTA++K +YP 
Sbjct: 1017 NKMYPKFIEGGRKNNLNEERLEKIWNDWKAFAEYAFNKSHSTCYAFIAYQTAYLKANYPA 1076

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKG 844
            E++A+ M+  ++N + I  F +D +   + ++ P VN     F V +  +I + L AIKG
Sbjct: 1077 EYMASVMSNNINNTDSITMFMEDCKSMGVDVLGPDVNESQYKFSVNEKGQIRFGLGAIKG 1136

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ 903
            +G   +  I     +  F ++ DF  R+   ++N+RV ESLV AGA D    + R Q   
Sbjct: 1137 IGEGPSEAITRERENGRFKNIYDFFERILPSQMNKRVAESLVLAGAFDELDSFHRGQYFD 1196

Query: 904  -------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-----R 951
                   +L+ + +Y Q  ++++     ++FA     F++++ +E+  +          +
Sbjct: 1197 IDMAGKTNLERLIRYGQSFQESKNEMEHSLFAD----FAEEVQIEQPKLAPCPEWPNMHK 1252

Query: 952  FENEQRVLGFYFSGHPLDVYK 972
               E+ ++GFY S HPLD +K
Sbjct: 1253 LNKEKEIIGFYLSAHPLDEFK 1273


>gi|319401016|gb|EFV89235.1| DNA polymerase III subunit alpha [Staphylococcus epidermidis FRI909]
          Length = 1065

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 343/1038 (33%), Positives = 553/1038 (53%), Gaps = 111/1038 (10%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI G
Sbjct: 4    HLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              + I + D L           T+ ++VL     +G + L +L S + +    K    + 
Sbjct: 64   --MTIYLTDGLY----------TIETVVL-AKNNQGLKSLYQLSSAIMM----KNKEEVP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRHRG 191
            + WL++     +I+              F  ++++ K+++  F+      LY+N   +  
Sbjct: 107  IEWLKKYDKHLIII--------------FKEAELSHKQIIDAFEG--KKELYLNHNSNNT 150

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKDRPRV 248
                R               V   ++ +L+E+D E    L A+  +T   ++ +K+    
Sbjct: 151  LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKE---- 191

Query: 249  TPDHYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDD----- 302
            T D +  +  E+ ++  +L E  + NT EI + C   +  H  +LP+F+    +      
Sbjct: 192  TLDEHFPSIEELQTL--NLSEDMIANTNEIEKLCQAEIAYHQSLLPQFVTPNGETSKDYL 249

Query: 303  ----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                I + ++ EL +K                      Y  RL  E  +I  M F  YFL
Sbjct: 250  WTILIHRLQKWELNDKT---------------------YFDRLKHEYKIITDMGFEDYFL 288

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV+D I +AK + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD 
Sbjct: 289  IVSDLIHFAKTHEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDI 348

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDF   RR++VI+YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KL
Sbjct: 349  DIDFEDTRREKVIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKL 408

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP+     ++L+       F+     +   +R  E+S+KLEGL RH STHAAGI+I D+P
Sbjct: 409  IPHKLG--ITLEEAYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQP 466

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVD 597
            L +  P+       L  TQ+ M   E+ GL+K DFLGL+ L+++ Q  L       + +D
Sbjct: 467  LFKFAPLTTGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINID 524

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP+DD + + LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ 
Sbjct: 525  IEAIPYDDKKVFDLLSNGDTTGIFQLESEGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEE 584

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y  R++   ++  +HP ++P+LK T GVIIYQEQ+MQIA  ++ +S  EAD+LRRAM
Sbjct: 585  IPTYITRRHNPNQVAYLHPDLEPILKNTYGVIIYQEQIMQIASQVASFSYGEADILRRAM 644

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             KK +  ++ +++ FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +
Sbjct: 645  SKKNRAILESERQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMS 704

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYP  F A  ++  + + +K      +A+   I I+PP++N     +K  +  IY 
Sbjct: 705  YLKVHYPHYFYANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYL 764

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            SL  IKG+G  + + I+ E   + P+    DF  R+  +  NR++LESL+  GA D FG 
Sbjct: 765  SLGTIKGIGYQSVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGK 824

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LLQ++D +      VE++     + +F       + K + E+       +  + E+
Sbjct: 825  TRATLLQAIDQVLDLNSDVEQD-----DMLF----DLLTPKQSYEEKEELPDQLLSDYEK 875

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRKGSRI 1015
              LGFY S HP++      +K   K Y        G++ + +       +Q +T+ G  +
Sbjct: 876  EYLGFYISKHPVE------KKFEKKQYLGIFQLSNGSHYQPILVQFDHIKQIRTKNGQNM 929

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +VT ++     +   FP
Sbjct: 930  AFVTMNDGRTMMDGVIFP 947


>gi|308180707|ref|YP_003924835.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            plantarum subsp. plantarum ST-III]
 gi|308046198|gb|ADN98741.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            plantarum subsp. plantarum ST-III]
          Length = 1116

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 340/1029 (33%), Positives = 553/1029 (53%), Gaps = 45/1029 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V LQV S++SLL    +++ ++         A+A+TD + ++  ++F      A I PI
Sbjct: 4    YVPLQVLSTFSLLHSTSTVSELVQTAKQQGYSALALTDVDIMYGIVDFYNACRQAEINPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  L++           G+       S+V+L     GYQ L++L +          S+ 
Sbjct: 64   LGITLNL----------LGRELTAQTFSLVVLAKDQAGYQNLMQLSTMKQTATDAGLSLT 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
              L +L       L++LT      +      N+++ A   + T ++      LY+ +   
Sbjct: 114  AVLPYLNH-----LMVLTPAKDSELAALLLQNTAERAADWITTLRQAVDSASLYLGISLD 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            +       + +   A  H+LP+VA +   ++  +DY A  VL A+     + Q +  + +
Sbjct: 169  QA--PALRTTMTAFAQQHQLPVVALDPVDYVQAKDYFAVSVLRAIDRGQQIEQPESLQGI 226

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
               HYL+  + + + +  L   L   V      +   QV        + +      +   
Sbjct: 227  EGSHYLRPANTVTADYEQL--GLTTAVAATAEIAAQCQVELQFQQPQLPQFPTPAGQPAN 284

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR    AGL  RLA  AI      Q Y+ RLD EL VI +M F  YFLIV D + +A 
Sbjct: 285  VYLRQLCTAGLTERLA--AITPSVDQQAYQDRLDHELTVIDQMGFDDYFLIVWDVMNFAH 342

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLN  R +MPD D+D   +RR+
Sbjct: 343  EAQITTGPGRGSAAGSLVAYALNITDVDPLKYDLLFERFLNAKRANMPDIDLDIPDNRRE 402

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +V+ YV +KYGH+RVAQIITFG+L AK ALRDVGR   +   ++      IPN   H   
Sbjct: 403  QVLNYVHDKYGHDRVAQIITFGTLAAKQALRDVGRVFGLSTYEMSDWSAAIPNQ-LHITL 461

Query: 489  LQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             QA     R +   +AD S ++LL E +++LEGL RH STHAAG+V+  +PL Q+VP+  
Sbjct: 462  DQAYQGSQRLQNL-VADSSKNKLLFETARRLEGLPRHYSTHAAGVVLSQKPLIQIVPLQA 520

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
               + + +TQ+    +E  GL+K DFLGL+ L+L+  +L ++  Q G  + ++ I  +D 
Sbjct: 521  GSET-MMMTQYTKDTVEAVGLLKMDFLGLRNLSLMASALHYVQRQTGKPLAITKIDLNDP 579

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T G+FQ ES+G+R  L  + PD  E + A+ +LYRPGP++NI  +  RK 
Sbjct: 580  ATLKLFQAGDTTGVFQFESAGIRNVLRRLHPDNFELVAAVNALYRPGPMENIDHFIARKQ 639

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E +      + P+L  T G+++YQEQVMQ+A ++ G++L EAD+LRRAM KK +  +D
Sbjct: 640  GQEPVSYPAEQLAPILGPTYGILVYQEQVMQVAAVMGGFTLGEADLLRRAMSKKKRAVID 699

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +++FI+GA +NG S+ +A  +++ + +FA+YGFN+SHA AY+ ++++ A++K HY   
Sbjct: 700  KMRQQFIAGAQQNGYSEAVATQVYQYIEQFANYGFNRSHAIAYSKMAFELAYLKVHYSGA 759

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  + M   + N  K+K++  +ARQ  + I+PP +N     F      I + L++IKG+ 
Sbjct: 760  FFTSLMNSVLGNGTKLKQYLAEARQHQVAIIPPDINRSGQYFDWNGQAIVFGLSSIKGLR 819

Query: 847  TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  ++ E  A+ PF SL+ F  R+D+K L   ++++L++AGA D FG +R +LL S+
Sbjct: 820  RDFIASVLDERQANGPFKSLQQFMQRIDAKWLKADLMDALIYAGAFDHFGLNRAELLTSV 879

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              +   A+    + +     +F     + + KI  +K    +   R   E   LG Y SG
Sbjct: 880  PELMSSAELAGGSMS-----LFE----SLAPKI--KKQPELSLGERLAKEAEYLGVYVSG 928

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK-KTRKGSRIGWVTFSEPA 1024
            HP++ Y  + ++     + + V+T+         + ++K +  +T++G  + + T S+ +
Sbjct: 929  HPVETYDWLAQQR----HTQLVSTLTSEQPAQILVYITKVRTIRTKRGQPMAFATGSDLS 984

Query: 1025 KEYEANFFP 1033
             E +   FP
Sbjct: 985  GEIDLTIFP 993


>gi|300767496|ref|ZP_07077408.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            plantarum subsp. plantarum ATCC 14917]
 gi|300495315|gb|EFK30471.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            plantarum subsp. plantarum ATCC 14917]
          Length = 1116

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 340/1029 (33%), Positives = 553/1029 (53%), Gaps = 45/1029 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V LQV S++SLL    +++ ++         A+A+TD + ++  ++F      A I PI
Sbjct: 4    YVPLQVLSTFSLLHSTSTVSELVQTAKQQGYSALALTDVDIMYGIVDFYNACRQAEITPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  L++           G+       S+V+L     GYQ L+ L +          S+ 
Sbjct: 64   LGITLNL----------LGRELTAQTFSLVVLAKDQAGYQNLMRLSTMKQTATDAGLSLT 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
              L +L       L++LT      +      N+++ A   + T +++     LY+ +   
Sbjct: 114  AVLPYLNH-----LMVLTPAKDSELAALLLQNTAERAADWITTLRQVVDSASLYLGISLD 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            +       + +   A  H+LP+VA +   ++  +DY A  VL A+     + Q +  + +
Sbjct: 169  QA--PALRTTMTAFAQQHQLPVVALDPVDYVQAKDYFAVSVLRAIDRGQQIEQPESLQGI 226

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
               HYL+  + + + +  L   L   V      +   QV        + +      +   
Sbjct: 227  EGSHYLRPANTVTADYEQL--GLTTAVAATAEIAAQCQVELQFQQPQLPQFPTPAGQPAN 284

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR    AGL  RLA  AI      Q Y+ RLD EL VI +M F  YFLIV D + +A 
Sbjct: 285  VYLRQLCTAGLTERLA--AITPSVDQQAYQDRLDHELTVIDQMGFDDYFLIVWDVMNFAH 342

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLN  R +MPD D+D   +RR+
Sbjct: 343  EAQITTGPGRGSAAGSLVAYALNITDVDPLKYDLLFERFLNAKRANMPDIDLDIPDNRRE 402

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +V+ YV +KYGH+RVAQIITFG+L AK ALRDVGR   +   ++      IPN   H   
Sbjct: 403  QVLNYVHDKYGHDRVAQIITFGTLAAKQALRDVGRVFGLSTYEMSDWSAAIPNQ-LHITL 461

Query: 489  LQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             QA     R +   +AD S ++LL E +++LEGL RH STHAAG+V+  +PL Q+VP+  
Sbjct: 462  DQAYQGSQRLQNL-VADSSKNKLLFETARRLEGLPRHYSTHAAGVVLSQKPLIQIVPLQA 520

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
               + + +TQ+    +E  GL+K DFLGL+ L+L+  +L ++  Q G  + ++ I  +D 
Sbjct: 521  GSET-MMMTQYTKDTVEAVGLLKMDFLGLRNLSLMASALHYVQRQTGKPLAITKIDLNDP 579

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T G+FQ ES+G+R  L  + PD  E + A+ +LYRPGP++NI  +  RK 
Sbjct: 580  ATLKLFQAGDTTGVFQFESAGIRNVLRRLHPDNFELVAAVNALYRPGPMENIDHFIARKQ 639

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E +      + P+L  T G+++YQEQVMQ+A ++ G++L EAD+LRRAM KK +  +D
Sbjct: 640  GQEPVSYPAEQLAPILGPTYGILVYQEQVMQVAAVMGGFTLGEADLLRRAMSKKKRAVID 699

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +++FI+GA +NG S+ +A  +++ + +FA+YGFN+SHA AY+ ++++ A++K HY   
Sbjct: 700  KMRQQFIAGAQQNGYSEAVATQVYQYIEQFANYGFNRSHAIAYSKMAFELAYLKVHYSGA 759

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  + M   + N  K+K++  +ARQ  + I+PP +N     F      I + L++IKG+ 
Sbjct: 760  FFTSLMNSVLGNGTKLKQYLAEARQHQVAIIPPDINRSGQYFDWNGQAIVFGLSSIKGLR 819

Query: 847  TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  ++ E  A+ PF SL+ F  R+D+K L   ++++L++AGA D FG +R +LL S+
Sbjct: 820  RDFIASVLDERQANGPFKSLQQFMQRIDAKWLKADLMDALIYAGAFDHFGLNRAELLTSV 879

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              +   A+    + +     +F     + + KI  +K    +   R   E   LG Y SG
Sbjct: 880  PELMSSAELAGGSMS-----LFE----SLAPKI--KKQPELSLGERLAKEAEYLGVYVSG 928

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK-KTRKGSRIGWVTFSEPA 1024
            HP++ Y  + ++     + + V+T+         + ++K +  +T++G  + + T S+ +
Sbjct: 929  HPVETYDWLAQQR----HTQLVSTLTSEQPAQILVYITKVRTIRTKRGQPMAFATGSDLS 984

Query: 1025 KEYEANFFP 1033
             E +   FP
Sbjct: 985  GEIDLTIFP 993


>gi|210635289|ref|ZP_03298485.1| hypothetical protein COLSTE_02416 [Collinsella stercoris DSM 13279]
 gi|210158450|gb|EEA89421.1| hypothetical protein COLSTE_02416 [Collinsella stercoris DSM 13279]
          Length = 1267

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 359/1139 (31%), Positives = 562/1139 (49%), Gaps = 124/1139 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---- 65
            +FVHL  H+ YS+L+GA  + +++ +     QPA+AITD   ++   E    AC A    
Sbjct: 2    AFVHLHNHTVYSMLDGATRIKDMVQRAVDLGQPAVAITDHGYMYGVPELGL-ACDAVNHG 60

Query: 66   ----------------GIQPIIGC-------------QLDIDMQDNLKMTNQGKTPFPTV 96
                            G +  + C               D+ M D     ++ K P    
Sbjct: 61   TPEYKVWSHDKSFLEKGRRDELECPDKDADPRGYEQHMKDLAMWDAQGNIDELKPPLVIK 120

Query: 97   P-----------------------SIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSVRIC 132
            P                        +VL     +GY  L++ VS   +  QG     R+ 
Sbjct: 121  PIFGCEVYFTPDDTLARDRKPELYHMVLFAQNEKGYVNLMQTVSEAAV--QGFYYKPRVT 178

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH-- 189
            L  L+    EGLI  +   +G I +         A +   TF+  F     Y+ +Q H  
Sbjct: 179  LDNLRR-HREGLIASSACIAGIIPKCIDRGEMDKAIEWAETFRDTFEPGNFYIEIQEHGI 237

Query: 190  ---RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                G  D      ++++A    + ++ATN+  +L+ +D    DV+M +   + +   +R
Sbjct: 238  TTDSGITDEELSKTLIEIARQVGVKVIATNDFHYLTRDDAPVQDVIMCIGTGSKIDDPNR 297

Query: 246  PRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R+   + Y+K   EM ++F   PEA +NT+EIA +C+  L   + ILP +      D  
Sbjct: 298  IRMEGSEFYMKTEDEMRALFPYCPEACDNTLEIAEKCNVELDWDSIILPNY---PLLDPG 354

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +  E++ R +   GL  R       K     D R+R +FE  VI    F+ YFLIVA+++
Sbjct: 355  ETHESQFRRECEEGLAKRYGADWDGKEIGGVDIRERFEFEYKVICDKGFAAYFLIVAEYV 414

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK+N I VGPGRGS AG++ AYA+ IT  DPL   L+FERFL+P+R  MPD D+DF  
Sbjct: 415  RWAKQNGIGVGPGRGSAAGALVAYAMDITTFDPLSNGLMFERFLSPERTEMPDIDMDFDD 474

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EV+ +V+  YG E+V  +IT+ +++AK A+ D  R L  P     RL K++P DP 
Sbjct: 475  ERRLEVVEHVRQLYGPEKVTHVITYSTIKAKQAINDAARVLDYPVYMGQRLSKMVPGDPG 534

Query: 485  HPVSLQAIAD---------DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
              V L+ + +         +    EA   D    R+++ +  +EGL R    HA  ++I 
Sbjct: 535  --VKLKQVLEKIPGKEDMYNPDLVEAYQKDEDARRIIDTALSIEGLTRGEGVHACAVLIC 592

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
               +++ VP   D +  + +TQ+    +   GL+K DFLGL+TLT++ K+   + +  G+
Sbjct: 593  RDAVNEHVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKANIKKNFGI 652

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D+  IPFDD + + L+++  T G+FQ+ES+GM   ++ M+P   + ++AL++LYRPGP
Sbjct: 653  DIDVDAIPFDDPKIFELMSSGRTAGVFQVESAGMTATIKNMKPTEYKHVVALIALYRPGP 712

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +   +V  Y NR NGKE  VS  P +D +L ET G ++YQEQVM I+  + G+S  E+D 
Sbjct: 713  LGAGMVTSYINRMNGKEPAVSYDPRLDGILGETYGTMVYQEQVMLISVEMCGFSKGESDS 772

Query: 713  -LRRAMGKKIKEEMDKQ------------KERFISGASKNGISKTIAVNIFELLAKFADY 759
             +R+ + KK  + +  Q             + +++GA KNG  + +A  I++ + +FA Y
Sbjct: 773  RIRKPVAKKKIKMLTDQVFKWSDGEDETIYDHWMNGAEKNGYKREVAQKIWDDVLEFASY 832

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSH+A YA++  QTAW+K HYP E++AA +T      +KI  +    R   I ++PP
Sbjct: 833  AFNKSHSAGYAILVMQTAWLKAHYPNEYMAAVLTSYTGKTDKIVHYVSACRHDGIAVLPP 892

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLN 878
             +N    +F      + + LA I+GVG      I+ E     PF +L DF  RVD+ + N
Sbjct: 893  DINESGTEFTATAEGVRFGLAGIRGVGEGVTEAIIAEREKGGPFKNLHDFVERVDASQAN 952

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLD-----NIQKYAQWVEKNRTNKHE---NIFAHE 930
            RRV+E+L+  GA D  GY R QL+  +D     NI   A   +K+R        ++F   
Sbjct: 953  RRVIEALIKGGAFDSTGYPRRQLMHFVDRDNPENIIDAAVKRQKDRAAGQTSLFDVFGDV 1012

Query: 931  KGTFSDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYKPILRK------------ 977
            +G+  + I  E    E +  ++   E+ VLG Y S HPL  Y+  L K            
Sbjct: 1013 EGSGFEVIVPEPDGQEWDRHMKLSFEKEVLGIYVSDHPLRPYEYALAKAREFTLSQIDTG 1072

Query: 978  ---MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               MG  G   +     G     A MV S  ++ T+ G  +  VT  +   E     FP
Sbjct: 1073 FETMGPAGNAVNQEIPEGKPYWWAGMVSSVSKRVTKNGDPMAIVTLEDMEGEATVVIFP 1131


>gi|229814931|ref|ZP_04445269.1| hypothetical protein COLINT_01974 [Collinsella intestinalis DSM
            13280]
 gi|229809418|gb|EEP45182.1| hypothetical protein COLINT_01974 [Collinsella intestinalis DSM
            13280]
          Length = 1272

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 360/1139 (31%), Positives = 562/1139 (49%), Gaps = 124/1139 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---- 65
            +FVHL  H+ YS+L+GA  + +++ +      PA+AITD   ++   E    AC A    
Sbjct: 7    AFVHLHNHTVYSMLDGATRIKDMVSRAVELGMPAVAITDHGYMYGVPELGL-ACDAVNHG 65

Query: 66   ----------------GIQPIIGC-------------QLDIDMQDNLKMTNQGKTPF--- 93
                            G +  + C               D+ M D     ++ K P    
Sbjct: 66   TPEYKVWSHDKSFLEKGRRDELECPDQESDPRGYEQHMKDLAMWDEKGNIDELKPPLVIK 125

Query: 94   --------------------PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSVRIC 132
                                P +  +VL     +GY  L++ VS   +  QG     R+ 
Sbjct: 126  PIFGCEVYFTPDETLARDRKPELYHMVLFAQNEKGYVNLMQTVSEAAV--QGFYYKPRVT 183

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH-- 189
            L  L+    EGLI  +   +G I +         A +   TF+  F     Y+ +Q H  
Sbjct: 184  LDNLRR-HREGLIASSACIAGIIPKCIDRGEMATAIEWAETFRDTFEPGNFYIEIQEHGI 242

Query: 190  ---RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                G  D      ++Q+A    + ++ATN+  +L+ ED    DV+M +  ++ +   +R
Sbjct: 243  TTDSGITDEELSRTLIQIAEQVGVKVIATNDFHYLTREDAPVQDVVMCIGTNSKIDDPNR 302

Query: 246  PRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R+   + Y+K   EM ++F   PEA +NTVEIA +C+  L   + ILP +      D  
Sbjct: 303  IRMEGSEFYMKTEEEMRALFPYCPEACDNTVEIAEKCNVELDWDSIILPNY---PLLDPG 359

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +  E++ R +   GL  R       +     D R+R +FE  VI    F+ YFLIVA+++
Sbjct: 360  ETHESQFRRECEEGLAKRYGDDWDGREIGGVDIRERFEFEYKVICDKGFAAYFLIVAEYV 419

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK+N I VGPGRGS AG++ AYA+ IT  DPL   L+FERFL+P+R  MPD D+DF  
Sbjct: 420  RWAKQNGIGVGPGRGSAAGALVAYAMDITTFDPLSNGLMFERFLSPERTEMPDIDMDFDD 479

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI +V+  YG E+V  +IT+ +++AK A+ D  R L  P     RL K++  DP 
Sbjct: 480  ERRLEVIEHVRQLYGPEKVTHVITYSTIKAKQAINDAARVLDYPVYMGQRLSKMVSADPG 539

Query: 485  HPVSLQAIAD---------DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
              V L+ + +            F EA   D    R+++ +  +EGL R    HA  ++I 
Sbjct: 540  --VKLKQVLEKQPGKEDLYSPDFVEAYQKDEDARRIIDTALSIEGLTRGEGVHACAVLIC 597

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
               +++ VP   D +  + +TQ+    +   GL+K DFLGL+TLT++ K+   + +  G+
Sbjct: 598  RDAVNEHVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKANIKKSFGI 657

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D+  IPFDD + + L+++  T G+FQ+ES+GM   ++ M+P   + ++AL++LYRPGP
Sbjct: 658  DIDVDAIPFDDPKIFELMSSGRTAGVFQVESAGMTATIKNMKPTEYKHVVALIALYRPGP 717

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +   +V  Y NR NGKE  VS  P +D +L ET G ++YQEQVM I+  + G+S  E+D 
Sbjct: 718  LGAGMVTSYINRMNGKEPAVSYDPRLDGILGETYGTMVYQEQVMLISVEMCGFSKGESDS 777

Query: 713  -LRRAMGKKIKEEMDKQ------------KERFISGASKNGISKTIAVNIFELLAKFADY 759
             +R+ + KK  + +  Q             + +++GA KNG  +++A  I++ + +FA Y
Sbjct: 778  RIRKPVAKKKIKMLTDQVFKWSDGEDETIYDHWMNGAEKNGYKRSVAQKIWDDVLEFASY 837

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSH+A YA++  QTAW+K HYP E++AA +T      +KI  +    R   I ++PP
Sbjct: 838  AFNKSHSAGYAILVMQTAWLKAHYPNEYMAAVLTSYTGKTDKIVHYVSACRHDGIAVLPP 897

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLN 878
             +N    +F      + + LA I+GVG    + I+E      PF +L DF  RVDS + N
Sbjct: 898  DINESGTEFTATPEGVRFGLAGIRGVGEGVTQAIIEEREKGGPFKNLHDFVERVDSSQAN 957

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLD-----NIQKYAQWVEKNRTNKHE---NIFAHE 930
            RRV+E+L+  GA D  GY R QL+  +D     NI   A   +K+R        ++F   
Sbjct: 958  RRVIEALIKGGAFDSTGYPRRQLMHFVDRDNPENIIDAAVKRQKDRAAGQTSLFDVFGDV 1017

Query: 931  KGTFSDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYKPILRK------------ 977
            +G+  + I  E    E +  ++   E+ VLG Y S HPL  Y+  L K            
Sbjct: 1018 EGSGFEVIVPEPDGQEWDRHMKLSFEKEVLGIYVSDHPLRPYEYALAKAREFTLSQIDTG 1077

Query: 978  ---MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               MG  G   +     G     A MV    ++ T+ G  +  V   +   E     FP
Sbjct: 1078 FETMGPTGNAVNQEIPEGKPYWWAGMVSGVGKRVTKNGDPMAIVQLEDMEGEATVVVFP 1136


>gi|191638356|ref|YP_001987522.1| DNA-directed DNA polymerase III, alpha subunit [Lactobacillus casei
            BL23]
 gi|190712658|emb|CAQ66664.1| DNA-directed DNA polymerase III, alpha subunit [Lactobacillus casei
            BL23]
 gi|327382384|gb|AEA53860.1| DNA polymerase III [Lactobacillus casei LC2W]
 gi|327385585|gb|AEA57059.1| DNA polymerase III [Lactobacillus casei BD-II]
          Length = 1098

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 337/1038 (32%), Positives = 548/1038 (52%), Gaps = 79/1038 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L++++    +    AIA+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q+ ID                    ++++    +GY +L+++ +++ L        
Sbjct: 62   LLGMQIAIDDA-----------------KLLVIAKNNQGYHQLLKISTQIMLATS----- 99

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               +++   +   GL+ +T   S P   A   N    A   L        + +YV L   
Sbjct: 100  --PVAFADLLPLTGLVAITLPDS-PFSAAVVANDHNRAVAFLQELDNKQPEAVYVGLD-- 154

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               + + ++ +   A + +L L+A  N L+    D     V+ A+   + ++ +D P +T
Sbjct: 155  ---EAHLDTPLPTFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRD-PVLT 210

Query: 250  P--DHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 +LK  ++  + F  + L  A++N  +IA +    +    P LP +          
Sbjct: 211  DAGPWWLKPPADASAPFVAAGLQAAVDNAAQIADQTDVTITFKQPQLPHY---------- 260

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFLIVA 361
            +  ++L +K       +LAQ  +A  +H Q     Y+QRL +EL+VI +M F+ YFL+V 
Sbjct: 261  QTPDQLASKDYL---TKLAQEGLANRFHDQPIPTTYQQRLQYELDVIIKMGFADYFLVVW 317

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A K NI  G GRGS AGS+ +YAL IT++DP+ + LLFERFLNP R  MPD D+D
Sbjct: 318  DVMNYAHKVNIMTGAGRGSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLD 377

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
               +RR E+I+YV +KYG   +AQIITFG+  AK A+RDV R   M   + +   + IPN
Sbjct: 378  IPDNRRGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPN 437

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 + L+   D S+  +  +AD   +R+L + +  LEGL RH STHAAGIV+ + PL+
Sbjct: 438  --LLHMDLKTAYDQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLT 495

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
              V + +     L  TQ     +E  GL+K DFLGLK L +L  +  F+ +  G   D  
Sbjct: 496  DTVAL-QPSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPK 554

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP +D  T  L     T G+FQ ES+G++  L  ++P   ED++A+ +LYRPGP++NI 
Sbjct: 555  QIPLNDQPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENID 614

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RKNG+E I    P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM K
Sbjct: 615  TFIARKNGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSK 674

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    +  ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+++++  A++
Sbjct: 675  KKSSVLAAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYL 734

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K H P  F AA M   M+N+ K++ + Q+A+   + ++ P +NT    FK+ D +I + L
Sbjct: 735  KVHDPAAFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGL 794

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             ++KG+    +  I  A  + PF    D   R++ K L     + L+ AGA D F  +R 
Sbjct: 795  LSVKGMRRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRA 854

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS----DKITLEKFSVENSSVRFENE 955
            Q + +LD +    +            +  ++ G FS      I + +     +  R E E
Sbjct: 855  QTIANLDELINSVK------------LAGNDVGLFSVLAPKPIVVPEMP---AGERLEEE 899

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
              VLG Y SGHP+D Y P+  +  +      V    G  + +  +V   ++ +T+ G  +
Sbjct: 900  ANVLGVYLSGHPVDKYAPLKTQYTLVNV---VDLAEGRTVDILLLVRHIKRIRTKTGKPM 956

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +         FP
Sbjct: 957  AFVDGQDATGTVSLTVFP 974


>gi|57867208|ref|YP_188839.1| DNA polymerase III, alpha subunit [Staphylococcus epidermidis RP62A]
 gi|81819374|sp|Q5HNK2|DPO3A_STAEQ RecName: Full=DNA polymerase III subunit alpha
 gi|57637866|gb|AAW54654.1| DNA polymerase III, alpha subunit [Staphylococcus epidermidis RP62A]
          Length = 1065

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 348/1038 (33%), Positives = 553/1038 (53%), Gaps = 111/1038 (10%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI G
Sbjct: 4    HLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              + I + D L           T+ ++VL     +G + L +L S + +  + K+ V I 
Sbjct: 64   --MTIYLTDGLY----------TIETVVL-AKNNQGLKSLYQLSSAIMM--RNKEEVPI- 107

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRHRG 191
              WL+    E LI++             F  ++++ K+++  F+      LY+N   +  
Sbjct: 108  -EWLKRYD-EHLIII-------------FKEAELSHKQVIDAFEG--KKELYLNHNSNNT 150

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKDRPRV 248
                R               V   ++ +L+E+D E    L A+  +T   ++ +K+    
Sbjct: 151  LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKE---- 191

Query: 249  TPDHYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDD----- 302
            T D +  +  E+ ++  +L E  + N  EI   C   +  H  +LP+F+    +      
Sbjct: 192  TLDEHFPSIEELQTL--NLSEDMITNANEIEELCQAEIAYHQSLLPQFVTPNGETSKDYL 249

Query: 303  ----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                I +  E EL +K                      Y  RL  E  +I  M F  YFL
Sbjct: 250  WTILIHRLREWELNDKT---------------------YFNRLKHEYKIITDMGFEDYFL 288

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV+D I +AK + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD 
Sbjct: 289  IVSDLIHFAKTHEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDI 348

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDF   RR++VI+YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KL
Sbjct: 349  DIDFEDTRREKVIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKL 408

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP+     ++L+       F+     +   +R  E+S+KLEGL RH STHAAGI+I D+P
Sbjct: 409  IPHKLG--ITLEEAYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQP 466

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVD 597
            L +  P+       L  TQ+ M   E+ GL+K DFLGL+ L+++ Q  L       + +D
Sbjct: 467  LFKFAPLTTGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINID 524

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP+DD + + LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ 
Sbjct: 525  IEAIPYDDKKVFDLLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEE 584

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y  R++   ++  +HP ++P+LK T GVIIYQEQ+M IA  ++G+S  EAD+LRRAM
Sbjct: 585  ISTYITRRHNPNQVAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAM 644

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             KK +  ++ +++ FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +
Sbjct: 645  SKKNRAILESERQHFIDGAKNNGYDEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMS 704

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYP  F A  ++  + + +K      +A+   I I+PP++N     +K  +  IY 
Sbjct: 705  YLKVHYPHYFYANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYL 764

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            SL  IKG+G  + + I+ E   + P+    DF  R+  +  NR++LESL+  GA D FG 
Sbjct: 765  SLGTIKGIGYQSVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGK 824

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LLQ++D +      VE++     E +F       + K + E+       +  + E+
Sbjct: 825  TRATLLQAIDQVLDLNSDVEQD-----EMLF----DLLTPKQSYEEKEELPDQLLSDYEK 875

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRKGSRI 1015
              LGFY S HP++      +K   K Y        G++ + +       +Q +T+ G  +
Sbjct: 876  EYLGFYISKHPVE------KKFEKKQYLGIFQLSNGSHYQPILVQFDHIKQIRTKNGQNM 929

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +VT ++     +   FP
Sbjct: 930  AFVTMNDGRTMMDGVIFP 947


>gi|309790186|ref|ZP_07684758.1| DNA polymerase III, alpha subunit [Oscillochloris trichoides DG6]
 gi|308227771|gb|EFO81427.1| DNA polymerase III, alpha subunit [Oscillochloris trichoides DG6]
          Length = 1269

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 333/942 (35%), Positives = 513/942 (54%), Gaps = 41/942 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL VHS YSLL+G  S   I  + A     +IA+TD   ++ A+EF   A  AGI+PI
Sbjct: 4   FIHLHVHSEYSLLDGYASTKAIAGRAAELGMDSIALTDHGVMYGAMEFYDAAKKAGIKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK--- 126
           IG +  +      + T +G K  F     ++LL     GY+ L+ L +R +L    K   
Sbjct: 64  IGMEAYMAPGSRTEATTRGGKNYF----HLLLLAKNEVGYRNLVRLTTRAHLDGMAKGVF 119

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
              RI    L++   EGL++ +   +G + +       + A +    ++ L G +  ++ 
Sbjct: 120 ARPRIDRELLEQY-HEGLVVTSACIAGEVIQQLTAQQRKQAVETAAYYRDLLGAENYFLE 178

Query: 186 LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ- 242
           LQ H           ++V++     +PLV TN++ F+  ED E    +MA+  +    + 
Sbjct: 179 LQLHENTPELEGINDELVRIGEELGIPLVVTNDTHFVRAEDVETQHRVMAMGMNMTHQEF 238

Query: 243 -KDRPRVTPDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKEC 300
                ++   +++ +  EM + F     A LENT  IA  C+  L      LP+F   E 
Sbjct: 239 CNKGFKMDESYHIMSGEEMWAKFKRYGTAPLENTRRIADMCNLKLDFGRVQLPQFDLPEG 298

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D      + LR     GL  R        G    +Y  RLD EL+VI    F  Y LIV
Sbjct: 299 HDAA----SYLRLVCEEGLMKR------CNGNPPANYIARLDDELDVINATGFPDYMLIV 348

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            D++++A+   IP  P RGS   S+  Y L ITD+DP++  LLFERFL+ +R+ MPD D 
Sbjct: 349 WDYVKYARSRGIPCLP-RGSAGASLVLYCLGITDVDPVQNKLLFERFLSRERLEMPDIDT 407

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DF   RR E++ Y+  KYG E VAQIIT+G+L AKAALRD+GR L +  S+VDR+ KLIP
Sbjct: 408 DFADSRRGEILDYIAGKYGRENVAQIITYGTLGAKAALRDMGRVLGVELSEVDRVAKLIP 467

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
           + P      QA+      ++     P +  +++ ++K+EG  R+  THA G+V+   PL 
Sbjct: 468 SLPVGVTISQALERVPELKQIYTTQPHLAEVIDWAKKVEGRMRNVGTHACGVVVSRTPLE 527

Query: 541 QLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
           ++VP+ R  + +  V   F    + K GL+K D LGL  L+++ ++L+++ +  G+K++L
Sbjct: 528 EMVPLQRTTKDEHAVMASFEGPTLAKMGLLKMDILGLTNLSVVAEALNYIERSTGIKMEL 587

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
           + IP +D +T+  L    T  +FQLES+GM + L  ++P  ++D+ A+V+LYRPGP++ I
Sbjct: 588 ADIPLEDKKTFEALGRGETKNVFQLESAGMTRYLMQLKPTRVDDLYAMVALYRPGPLEQI 647

Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             Y   KN    I  +HP++ P+L++T GVI+YQEQ+MQ+ Q ++ Y+L +A ++ +A+ 
Sbjct: 648 PHYIQGKNDPANITYLHPILKPILEDTYGVIVYQEQIMQLLQTVADYTLGQAYIVIKAIS 707

Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           KK KE M +   +F  G  K GIS  +A  ++EL+  FA Y FN+ HA  Y ++SYQTAW
Sbjct: 708 KKNKELMAENGAKFKEGCLKKGISAQVADELWELILPFAGYSFNRPHATLYGLLSYQTAW 767

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831
           +K +YPVE++AA +T     +E + K   + R+  + ++PP VN     F++        
Sbjct: 768 LKVNYPVEYMAAVLTGAGGVIEDVAKAALETRRLGVALLPPDVNHSQKGFEIEPIQGQLP 827

Query: 832 -----DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
                 N I + LAAIK VG      I+EA  +   F +LED C+RVD   +N+RVLESL
Sbjct: 828 NGVRYQNAIRFGLAAIKNVGEGPLDAILEARTEGGAFSTLEDLCARVDRNAINKRVLESL 887

Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
           + AGALD    +R Q L  LD     A   +K R     ++F
Sbjct: 888 IKAGALDSLPGTRRQKLTVLDQAISAATEAQKARDVGQASLF 929


>gi|227535154|ref|ZP_03965203.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei
            ATCC 25302]
 gi|227187199|gb|EEI67266.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei
            ATCC 25302]
          Length = 1098

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 337/1038 (32%), Positives = 548/1038 (52%), Gaps = 79/1038 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L++++    +    AIA+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q+ ID                    ++++    +GY +L+++ +++ L        
Sbjct: 62   LLGMQIAIDDA-----------------KLLVIAKNNQGYHQLLKISTQIMLATS----- 99

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               +++   +   GL+ +T   S P   A   N    A   L        + +YV L   
Sbjct: 100  --PVAFADLLPLTGLVAITLPDS-PFSAAVAANDHDRAVAFLQELDNKQPEAVYVGLD-- 154

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               + + ++ +   A + +L L+A  N L+    D     V+ A+   + ++ +D P +T
Sbjct: 155  ---EAHLDTPLPAFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRD-PVLT 210

Query: 250  P--DHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 +LK  ++  + F  + L  A++N  +IA +    +    P LP +          
Sbjct: 211  DAGPWWLKPPADASAPFVAAGLQAAVDNAAQIADQTDVTITFKQPQLPHY---------- 260

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFLIVA 361
            +  ++L +K       +LAQ  +A  +H Q     Y+QRL +EL+VI +M F+ YFL+V 
Sbjct: 261  QTPDQLASKDYL---TKLAQEGLANRFHDQPIPTTYQQRLQYELDVIIKMGFADYFLVVW 317

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A K NI  G GRGS AGS+ +YAL IT++DP+ + LLFERFLNP R  MPD D+D
Sbjct: 318  DVMNYAHKVNIMTGAGRGSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLD 377

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
               +RR E+I+YV +KYG   +AQIITFG+  AK A+RDV R   M   + +   + IPN
Sbjct: 378  IPDNRRGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPN 437

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 + L+   D S+  +  +AD   +R+L + +  LEGL RH STHAAGIV+ + PL+
Sbjct: 438  --LLHMDLKTAYDQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLT 495

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
              V + +     L  TQ     +E  GL+K DFLGLK L +L  +  F+ +  G   D  
Sbjct: 496  DTVAL-QPSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPK 554

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP +D  T  L     T G+FQ ES+G++  L  ++P   ED++A+ +LYRPGP++NI 
Sbjct: 555  QIPLNDQPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENID 614

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RKNG+E I    P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM K
Sbjct: 615  TFIARKNGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSK 674

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    +  ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+++++  A++
Sbjct: 675  KKSSVLAAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYL 734

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K H P  F AA M   M+N+ K++ + Q+A+   + ++ P +NT    FK+ D +I + L
Sbjct: 735  KVHDPAAFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGL 794

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             ++KG+    +  I  A  + PF    D   R++ K L     + L+ AGA D F  +R 
Sbjct: 795  LSVKGMRRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRA 854

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS----DKITLEKFSVENSSVRFENE 955
            Q + +LD +    +            +  ++ G FS      I + +     +  R E E
Sbjct: 855  QTIANLDELINSVK------------LAGNDVGLFSVLAPKPIVVPEMP---AGERLEEE 899

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
              VLG Y SGHP+D Y P+  +  +      V    G  + +  +V   ++ +T+ G  +
Sbjct: 900  ANVLGVYLSGHPVDKYAPLKTQYTLVNV---VDLAEGRTVDILLLVRHIKRIRTKTGKPM 956

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +         FP
Sbjct: 957  AFVDGQDATGTVSLTVFP 974


>gi|302531855|ref|ZP_07284197.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4]
 gi|302440750|gb|EFL12566.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4]
          Length = 1190

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 360/1087 (33%), Positives = 573/1087 (52%), Gaps = 83/1087 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL VH+ YS+L+GA  +  +L +     QPAIA+TD   + +A EF + A  + +
Sbjct: 2    SDSFVHLHVHTEYSMLDGAAKVKPLLAEAERLGQPAIAMTDHGTMSAAAEFYRVAKNSPV 61

Query: 68   QPIIGCQLDIDMQDNL--------KMTNQGKTPFP---------TVPSIVLLVSTAEGYQ 110
            +PIIG +  +  +           + + +G   F          +   + +    A+G +
Sbjct: 62   KPIIGIEAYVAPESRFHKKPVFWGQASQRGSDEFGEGGDVSGSGSYTHMTMWAENADGLR 121

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L+++ S +   +   +  R+    + E    G++  TG  SG +         + A + 
Sbjct: 122  NLLKM-SSLASFEGYYRKPRMDRDLIAE-NHRGIMATTGCPSGEVQTRLRLGQREQAIQA 179

Query: 171  LLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
               +K +FG D  ++ L  H    +R     ++++    +L  VATN+S +++++  EAH
Sbjct: 180  ASDYKDIFGADNFFLELMDHGLPIERSVREGLLEIGKLLDLKPVATNDSHYVTQDQAEAH 239

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQ 286
              L+ V     +S   R +   D Y    +E +  + D  +P A +NT+ IA R    +Q
Sbjct: 240  SALLCVQAGKTLSDPTRFKFDGDGYYLKSAEAMREYWDKEVPGAAQNTLLIAER----VQ 295

Query: 287  VHAPI------LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +A +      +PRF   E     K E++ LR +    +  R   G        Q+Y+ R
Sbjct: 296  SYADVFDFHDRMPRFPVPEG----KTEDDLLREEVEKFVPTRFPDGP------TQEYKDR 345

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            +D EL ++A+M FS YFL+V D ++WAK+  I VGPGRGS  GS+ AY L ITD+DP+  
Sbjct: 346  IDRELGIMAKMGFSAYFLVVGDLVRWAKEQRIRVGPGRGSATGSLVAYILHITDLDPIEH 405

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            SLLFERFLNP+R+S PD D+DF   RR EV++Y  +K+G E VAQ+ITFG+++ KAA++D
Sbjct: 406  SLLFERFLNPERVSPPDIDLDFDDRRRGEVLQYTIDKWGAENVAQVITFGTIKTKAAIKD 465

Query: 461  VGRAL--QMPYSQVDRLCKLIPND-PAHPVSLQAIADD--------SRFREARLADPSVD 509
              R    Q  +S  D++ K +P    A  + L  I D         S  R     DP V 
Sbjct: 466  AARVHFGQPGFSIADKITKALPPPIAAQDIPLSGIFDPKHERYGEASEVRTLTETDPEVK 525

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD-LPVTQFNMKWIEKAGL 568
            ++++ ++ LEGL R+A  HA  +++   PL  ++P++R  R D   +T F+    E  GL
Sbjct: 526  QIMDTARGLEGLIRNAGVHACAVILSSEPLLDVIPLWR--RDDGATITGFDYPSCEDMGL 583

Query: 569  IKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            +K DFLGL TLT+++ ++  +    G ++DL+ +  DD +TY LL+   TLG+FQL+ + 
Sbjct: 584  LKMDFLGLSTLTIIEDTIQAVKDNHGREIDLATLALDDKKTYELLSRGDTLGVFQLDGAA 643

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPM 681
            MR  L  M P    DI A+++LYRPGP+  +  + Y  R NG++KI  IHP     ++P+
Sbjct: 644  MRSLLRAMAPTHFGDIAAVLALYRPGPMAANAHIDYAERSNGRQKISPIHPELKDALEPI 703

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L ET  +++YQEQVM IAQ L+GY+L  AD+LRRAMGKK KE ++K+ E+F  G    G 
Sbjct: 704  LGETYHLLVYQEQVMAIAQQLAGYTLGGADLLRRAMGKKKKEIIEKEFEKFREGMLGKGF 763

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            S      +++++  FA Y FNKSH A Y ++SY TA++K +YP EF+AA +T    N +K
Sbjct: 764  SAEACQTLWDVMLPFAGYAFNKSHTAGYGLVSYWTAYLKANYPAEFMAAQLTSNSGNKDK 823

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
               +  + R+  I+++PP VN   + F+   + I + L A++ VGT     I++   +K 
Sbjct: 824  SAIYLAECRRMGIKVLPPCVNESNLRFRAVGSDIRFGLGAVRNVGTNVVDSIVKTRQEKG 883

Query: 862  -FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             +    DF  + +    N+RV ESL+ AGA D FG +R+ ++   +   +    +++   
Sbjct: 884  LYTGFVDFLDKSELPVCNKRVTESLIKAGAFDAFGLTRLSMIAVHEEAVEAVVPLKRQEA 943

Query: 921  NKHENIFAHEKGTFSDKITLE-----------KFSVENSSVR--FENEQRVLGFYFSGHP 967
                ++F    GT  D+ + E           KF  +    +     E+ +LG Y S HP
Sbjct: 944  MGQFDLF----GTGGDESSAEVAAASSPLAHVKFGPDEYPRKQLLAYERDMLGLYVSAHP 999

Query: 968  LDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            LD  + ILR+   K     V    +   I L+ M+ S  ++  +KG     V   +    
Sbjct: 1000 LDGAERILRQHAPKPIAVLVDDAPKEGEIVLSGMISSVDRRVNKKGEPWAIVVVEDLDAS 1059

Query: 1027 YEANFFP 1033
             E  FFP
Sbjct: 1060 MEVLFFP 1066


>gi|293366351|ref|ZP_06613030.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus
            epidermidis M23864:W2(grey)]
 gi|291319476|gb|EFE59843.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus
            epidermidis M23864:W2(grey)]
 gi|329733734|gb|EGG70060.1| DNA polymerase III subunit alpha [Staphylococcus epidermidis VCU045]
          Length = 1065

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 346/1038 (33%), Positives = 551/1038 (53%), Gaps = 111/1038 (10%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI G
Sbjct: 4    HLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              + I + D L            +   V+L    +G + L ++ S + +  + K+ V I 
Sbjct: 64   --MTIYLTDGL-----------YIIETVVLAKNNQGLKSLYQISSAIMM--RNKEEVPI- 107

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRHRG 191
              WL+    E LI++             F  ++++ K+++  F+      LY+N   +  
Sbjct: 108  -EWLKRY-EEHLIII-------------FKEAELSHKQIIDAFEG--KKELYLNHNSNNT 150

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKDRPRV 248
                R               V   ++ +L+E+D E    L A+  +T   ++ +K+    
Sbjct: 151  LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKE---- 191

Query: 249  TPDHYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDD----- 302
            T D +  +  E+ ++  +L E  + N  EI   C   +  H  +LP+F+    +      
Sbjct: 192  TLDEHFPSIEELQTL--NLSEDMITNANEIEELCQAEIAYHQSLLPQFVTPNGETSKDYL 249

Query: 303  ----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                I +  E EL +K                      Y  RL  E  +I  M F  YFL
Sbjct: 250  WTILIHRLREWELNDKT---------------------YFNRLKHEYKIITDMGFEDYFL 288

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV+D I +AK + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD 
Sbjct: 289  IVSDLIHFAKTHEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDI 348

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDF   RR++VI+YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KL
Sbjct: 349  DIDFEDTRREKVIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKL 408

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP+     ++L+       F+     +   +R  E+S+KLEGL RH STHAAGI+I D+P
Sbjct: 409  IPHKLG--ITLEEAYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQP 466

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVD 597
            L +  P+       L  TQ+ M   E+ GL+K DFLGL+ L+++ Q  L       + +D
Sbjct: 467  LFKFAPLTTGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINID 524

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP+DD + + LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ 
Sbjct: 525  IEAIPYDDKKVFDLLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEE 584

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y  R++   ++  +HP ++P+LK T GVIIYQEQ+M IA  ++G+S  EAD+LRRAM
Sbjct: 585  IPTYITRRHNPNQVTYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAM 644

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             KK +  ++ +++ FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +
Sbjct: 645  SKKNRAILESERQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMS 704

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYP  F A  ++  + + +K      +A+   I I+PP++N     +K  +  IY 
Sbjct: 705  YLKVHYPHYFYANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYL 764

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            SL  IKG+G  + + I+ E   + P+    DF  R+  +  NR++LESL+  GA D FG 
Sbjct: 765  SLGTIKGIGYQSVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGK 824

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LLQ++D +      VE++     E +F       + K + E+       +  + E+
Sbjct: 825  TRATLLQAIDQVLDLNSDVEQD-----EMLF----DLLTPKQSYEEKEELPDQLLSDYEK 875

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRKGSRI 1015
              LGFY S HP++      +K   K Y        G++ + +       +Q +T+ G  +
Sbjct: 876  EYLGFYISKHPVE------KKFEKKQYLGIFQLSNGSHYQPILVQFDHIKQIRTKNGQNM 929

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +VT ++     +   FP
Sbjct: 930  AFVTMNDGRTMMDGVIFP 947


>gi|67921905|ref|ZP_00515421.1| DNA polymerase III alpha subunit:Protein splicing (intein) site
           [Crocosphaera watsonii WH 8501]
 gi|67856121|gb|EAM51364.1| DNA polymerase III alpha subunit:Protein splicing (intein) site
           [Crocosphaera watsonii WH 8501]
          Length = 880

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 321/827 (38%), Positives = 485/827 (58%), Gaps = 82/827 (9%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  LN ++D+    + PAIA+TD   ++ A+E  +      I+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLNALIDRALELEMPAIALTDHGVMYGAIELIKVCRNKSIKP 61

Query: 70  IIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           IIG ++     DI  +   K  +Q           V+L    +GY+ L++L +  +L  +
Sbjct: 62  IIGNEMYVINGDIKEKKKYKKYHQ-----------VVLAKNTQGYKNLVKLTTISHL--E 108

Query: 125 GKQS----VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFF---FNSSQVAEKRLLTFKK 176
           G Q      R C++  L E   EGLI+ +    G I +      F  ++   KR   ++K
Sbjct: 109 GMQGKGIFARPCINKELLEEYHEGLIVTSACLGGEIPQRLLAGDFKEAKAVAKR---YQK 165

Query: 177 LFGDRLYVNLQRHRGY--DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
           LF D  Y+ +Q H GY  DR   + + ++A   ++ +VATN+S F+S  D EAHD L+ +
Sbjct: 166 LFKDDFYLEIQDH-GYVQDRIVNTGIAKIARDLDIKIVATNDSHFISCYDVEAHDALLCI 224

Query: 235 AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCSFILQVH 288
               +++ + R R +   YLK+  EM  +F D LP     EA+ NT+E+A +      + 
Sbjct: 225 QTRKLITDEKRLRYSGTEYLKSADEMRLLFRDHLPDEIIEEAINNTLEVAEKIEPYKILG 284

Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
            P +P +      +     ++ +   A  GL  RL     ++     DYR+RL++EL ++
Sbjct: 285 EPRIPNYPVPAGHN----PDSFVEEIAWDGLLTRLK--CRSRSEIPDDYRERLEYELKML 338

Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
            RM FS YFL+V D+I++A+ N IPVGPGRGS AGS+ AY L IT+IDP+   LLFERFL
Sbjct: 339 QRMGFSTYFLVVWDYIKYARDNGIPVGPGRGSAAGSLVAYCLKITNIDPVHHGLLFERFL 398

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
           NP+R SMPD D DFC +RRDE+I+YV  KYG   VAQIITF  + +KA L+DV R L +P
Sbjct: 399 NPERKSMPDVDTDFCIERRDEMIQYVTRKYGEANVAQIITFNRMTSKAVLKDVARVLNIP 458

Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRH 524
           Y++ D++ K+IP     P  L+ +  D      F+E    DP+V R ++++ ++EG  + 
Sbjct: 459 YAESDKMTKMIPVSRGKPAKLKVMVSDKTPTPEFKERYDNDPTVHRWVDMAIRIEGTNKT 518

Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
              HAAG+VI   PL Q+VP+ ++    + +TQ+ M+ +E  GL+K DFLGL+ LT +Q+
Sbjct: 519 FGVHAAGVVISSEPLDQVVPLQKNNDGAV-ITQYYMEDLESLGLLKMDFLGLRNLTTIQR 577

Query: 585 SLDFLAQ-RGVKVDLSLIPFDD-------------------HETYHLLTTKGTLGIFQLE 624
           + D + Q + V++DL  +P D+                    +TY LL      GIFQLE
Sbjct: 578 TADLIKQNKRVELDLDQLPLDERKALEIIAKGTEKRLPPDVQKTYKLLEKGDLEGIFQLE 637

Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPML 682
           SSGM++ ++ ++P  IEDI ++++LYRPGP+D  ++  + NRK+G+E IV  H L++P+L
Sbjct: 638 SSGMKEIVKNLKPSGIEDISSILALYRPGPLDAGLIPKFINRKHGREDIVYQHKLLEPIL 697

Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
           KET  V++YQEQ+M++AQ L+GYSL EAD+LRRAMGKK   EM K +E FI G++KNG+S
Sbjct: 698 KETYAVLVYQEQIMKMAQDLAGYSLGEADLLRRAMGKKKISEMTKHREIFIDGSTKNGVS 757

Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
           + IA ++FE + KFA+Y            +SY T  +   Y   ++ 
Sbjct: 758 QAIAEDLFEQMIKFAEY-----------CLSYDTEILTVEYGAMYIG 793


>gi|329724716|gb|EGG61222.1| DNA polymerase III subunit alpha [Staphylococcus epidermidis VCU144]
          Length = 1065

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 347/1038 (33%), Positives = 553/1038 (53%), Gaps = 111/1038 (10%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI G
Sbjct: 4    HLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              + I + D L           T+ ++VL     +G + L ++ S + +  + K+ V I 
Sbjct: 64   --MTIYLTDGLY----------TIETVVL-AKNNQGLKSLYQISSAIMM--RNKEEVPI- 107

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRHRG 191
              WL+    E LI++             F  ++++ K+++  F+      LY+N   +  
Sbjct: 108  -EWLKRYD-EHLIII-------------FKEAELSHKQIIDAFEG--KKELYLNHNSNNT 150

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKDRPRV 248
                R               V   ++ +L+E+D E    L A+  +T   ++ +K+    
Sbjct: 151  LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKE---- 191

Query: 249  TPDHYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDD----- 302
            T D +  +  E+ ++  +L E  + N  EI   C   +  H  +LP+F+    +      
Sbjct: 192  TLDEHFPSIEELQTL--NLSEDMITNANEIEELCQAEIAYHQSLLPQFVTPNGETSKDYL 249

Query: 303  ----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                I +  E EL +K                      Y  RL  E  +I  M F  YFL
Sbjct: 250  WTILIHRLREWELNDKT---------------------YFNRLKHEYKIITDMGFEDYFL 288

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV+D I +AK + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD 
Sbjct: 289  IVSDLIHFAKTHEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDI 348

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDF   RR++VI+YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KL
Sbjct: 349  DIDFEDTRREKVIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKL 408

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP+     ++L+       F+     +   +R  E+S+KLEGL RH STHAAGI+I D+P
Sbjct: 409  IPHKLG--ITLEEAYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQP 466

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVD 597
            L +  P+       L  TQ+ M   E+ GL+K DFLGL+ L+++ Q  L       + +D
Sbjct: 467  LFKFAPLTTGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINID 524

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP+DD + + LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ 
Sbjct: 525  IEAIPYDDKKVFDLLSNGNTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEE 584

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y  R++   ++  +HP ++P+LK T GVIIYQEQ+M IA  ++G+S  EAD+LRRAM
Sbjct: 585  IPTYITRRHNPNQVAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAM 644

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             KK +  ++ +++ FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +
Sbjct: 645  SKKNRAILESERQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMS 704

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYP  F A  ++  + + +K      +A+   I I+PP++N     +K  +  IY 
Sbjct: 705  YLKVHYPHYFYANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYL 764

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            SL  IKG+G  + + I+ E   + P+    DF  R+  +  NR++LESL+  GA D FG 
Sbjct: 765  SLGTIKGIGYQSVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGK 824

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LLQ++D +      VE++     E +F       + K + E+       +  + E+
Sbjct: 825  TRATLLQAIDQVLDLNSDVEQD-----EMLF----DLLTPKQSYEEKEELPDQLLSDYEK 875

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRKGSRI 1015
              LGFY S HP++      +K   K Y        G++ + +       +Q +T+ G  +
Sbjct: 876  EYLGFYISKHPVE------KKFEKKQYLGIFQLSNGSHYQPILVQFDHIKQIRTKNGQNM 929

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +VT ++     +   FP
Sbjct: 930  AFVTMNDGRTMMDGVIFP 947


>gi|251811096|ref|ZP_04825569.1| DNA polymerase III alpha chain [Staphylococcus epidermidis
            BCM-HMP0060]
 gi|251805393|gb|EES58050.1| DNA polymerase III alpha chain [Staphylococcus epidermidis
            BCM-HMP0060]
          Length = 1065

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 348/1038 (33%), Positives = 553/1038 (53%), Gaps = 111/1038 (10%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI G
Sbjct: 4    HLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              + I + D L           T+ ++VL     +G + L +L S + +  + K+ V I 
Sbjct: 64   --MTIYLTDGLY----------TIETVVL-AKNNQGLKSLYQLSSAIMM--RNKEEVPI- 107

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRHRG 191
              WL+    E LI++             F  ++++ K+++  F+      LY+N   +  
Sbjct: 108  -EWLKRYD-EHLIII-------------FKEAELSHKQVIDAFEG--KKELYLNHNSNNT 150

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKDRPRV 248
                R               V   ++ +L+E+D E    L A+  +T   ++ +K+    
Sbjct: 151  LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKE---- 191

Query: 249  TPDHYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDD----- 302
            T D +  +  E+ ++  +L E  + N  EI   C   +  H  +LP+F+    +      
Sbjct: 192  TLDEHFPSIEELQTL--NLSEDMITNANEIEELCQAEIAYHQSLLPQFVTPNGETSKDYL 249

Query: 303  ----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                I +  E EL +K                      Y  RL  E  +I  M F  YFL
Sbjct: 250  WTILIHRLREWELNDKT---------------------YFNRLKHEYKIITDMGFEDYFL 288

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV+D I +AK + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD 
Sbjct: 289  IVSDLIHFAKTHEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDI 348

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDF   RR++VI+YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KL
Sbjct: 349  DIDFEDTRREKVIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKL 408

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP+     ++L+       F+     +   +R  E+S+KLEGL RH STHAAGI+I D+P
Sbjct: 409  IPHKLG--ITLEEAYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQP 466

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVD 597
            L +  P+       L  TQ+ M   E+ GL+K DFLGL+ L+++ Q  L       + +D
Sbjct: 467  LFKFAPLTTGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINID 524

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP+DD + + LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ 
Sbjct: 525  IEAIPYDDKKVFDLLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEE 584

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y  R++   ++  +HP ++P+LK T GVIIYQEQ+M IA  ++G+S  EAD+LRRAM
Sbjct: 585  IPTYITRRHNPNQVAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAM 644

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             KK +  ++ +++ FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +
Sbjct: 645  SKKNRAILESERQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMS 704

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYP  F A  ++  + + +K      +A+   I I+PP++N     +K  +  IY 
Sbjct: 705  YLKVHYPHYFYANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYL 764

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            SL  IKG+G  + + I+ E   + P+    DF  R+  +  NR++LESL+  GA D FG 
Sbjct: 765  SLGTIKGIGYQSVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGK 824

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LLQ++D +      VE++     E +F       + K + E+       +  + E+
Sbjct: 825  TRATLLQAIDQVLDLNSDVEQD-----EMLF----DLLTPKQSYEEKEELPDQLLSDCEK 875

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRKGSRI 1015
              LGFY S HP++      +K   K Y        G++ + +       +Q +T+ G  +
Sbjct: 876  EYLGFYISKHPVE------KKFEKKQYLGIFQLSNGSHYQPILVQFDHIKQIRTKNGQNM 929

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +VT ++     +   FP
Sbjct: 930  AFVTMNDGRTMMDGVIFP 947


>gi|329737251|gb|EGG73505.1| DNA polymerase III subunit alpha [Staphylococcus epidermidis VCU028]
          Length = 1065

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 346/1038 (33%), Positives = 551/1038 (53%), Gaps = 111/1038 (10%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI G
Sbjct: 4    HLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              + I + D L            +   V+L    +G + L ++ S + +  + K+ V I 
Sbjct: 64   --MTIYLTDGL-----------YIIETVVLAKNNQGLKSLYQISSAIMM--RNKEEVPI- 107

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRHRG 191
              WL+    E LI++             F  ++++ K+++  F+      LY+N   +  
Sbjct: 108  -EWLKRY-EEHLIII-------------FKEAELSHKQIIDAFEG--KKELYLNHNSNNT 150

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKDRPRV 248
                R               V   ++ +L+E+D E    L A+  +T   ++ +K+    
Sbjct: 151  LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKE---- 191

Query: 249  TPDHYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDD----- 302
            T D +  +  E+ ++  +L E  + N  EI   C   +  H  +LP+F+    +      
Sbjct: 192  TLDEHFPSIEELQTL--NLSEDMITNANEIEELCQAEIAYHQSLLPQFVTPNGETSKDYL 249

Query: 303  ----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                I +  E EL +K                      Y  RL  E  +I  M F  YFL
Sbjct: 250  WTILIHRLREWELNDKT---------------------YFNRLKHEYKIITDMGFEDYFL 288

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV+D I +AK + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD 
Sbjct: 289  IVSDLIHFAKTHEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDI 348

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDF   RR++VI+YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KL
Sbjct: 349  DIDFEDTRREKVIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKL 408

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP+     ++L+       F+     +   +R  E+S+KLEGL RH STHAAGI+I D+P
Sbjct: 409  IPHKLG--ITLEEAYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQP 466

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVD 597
            L +  P+       L  TQ+ M   E+ GL+K DFLGL+ L+++ Q  L       + +D
Sbjct: 467  LFKFAPLTTGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINID 524

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP+DD + + LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ 
Sbjct: 525  IEAIPYDDKKVFDLLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEE 584

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y  R++   ++  +HP ++P+LK T GVIIYQEQ+M IA  ++G+S  EAD+LRRAM
Sbjct: 585  IPTYITRRHNPNQVAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAM 644

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             KK +  ++ +++ FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +
Sbjct: 645  SKKNRAILESERQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMS 704

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYP  F A  ++  + + +K      +A+   I I+PP++N     +K  +  IY 
Sbjct: 705  YLKVHYPHYFYANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYL 764

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            SL  IKG+G  + + I+ E   + P+    DF  R+  +  NR++LESL+  GA D FG 
Sbjct: 765  SLGTIKGIGYQSVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGK 824

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LLQ++D +      VE++     E +F       + K + E+       +  + E+
Sbjct: 825  TRATLLQAIDQVLDLNSDVEQD-----EMLF----DLLTPKQSYEEKEELPDQLLSDYEK 875

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRKGSRI 1015
              LGFY S HP++      +K   K Y        G++ + +       +Q +T+ G  +
Sbjct: 876  EYLGFYISKHPVE------KKFEKKQYLGIFQLSNGSHYQPILVQFDHIKQIRTKNGQNM 929

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +VT ++     +   FP
Sbjct: 930  AFVTMNDGRTMMDGVIFP 947


>gi|27468296|ref|NP_764933.1| DNA polymerase III alpha chain [Staphylococcus epidermidis ATCC
            12228]
 gi|38604815|sp|Q8CNX0|DPO3A_STAES RecName: Full=DNA polymerase III subunit alpha
 gi|27315842|gb|AAO04977.1|AE016748_211 DNA polymerase III alpha chain [Staphylococcus epidermidis ATCC
            12228]
          Length = 1065

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 347/1038 (33%), Positives = 553/1038 (53%), Gaps = 111/1038 (10%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI G
Sbjct: 4    HLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              + I + D L           T+ ++VL     +G + L ++ S + +  + K+ V I 
Sbjct: 64   --MTIYLTDGLY----------TIETVVL-AKNNQGLKSLYQISSAIMM--RNKEEVPI- 107

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRHRG 191
              WL+    E LI++             F  ++++ K+++  F+      LY+N   +  
Sbjct: 108  -EWLKRYD-EHLIII-------------FKEAELSHKQIIDAFEG--KKELYLNHNSNNT 150

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKDRPRV 248
                R               V   ++ +L+E+D E    L A+  +T   ++ +K+    
Sbjct: 151  LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKE---- 191

Query: 249  TPDHYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDD----- 302
            T D +  +  E+ ++  +L E  + N  EI   C   +  H  +LP+F+    +      
Sbjct: 192  TLDEHFPSIEELQTL--NLSEDMITNANEIEELCQAEIAYHQSLLPQFVTPNGETSKDYL 249

Query: 303  ----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                I +  E EL +K                      Y  RL  E  +I  M F  YFL
Sbjct: 250  WTILIHRLREWELNDKT---------------------YFNRLKHEYKIITDMGFEDYFL 288

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV+D I +AK + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD 
Sbjct: 289  IVSDLIHFAKTHEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDI 348

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDF   RR++VI+YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KL
Sbjct: 349  DIDFEDTRREKVIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKL 408

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP+     ++L+       F+     +   +R  E+S+KLEGL RH STHAAGI+I D+P
Sbjct: 409  IPHKLG--ITLEEAYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQP 466

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVD 597
            L +  P+       L  TQ+ M   E+ GL+K DFLGL+ L+++ Q  L       + +D
Sbjct: 467  LFKFAPLTTGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINID 524

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP+DD + + LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ 
Sbjct: 525  IEAIPYDDKKVFDLLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEE 584

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y  R++   ++  +HP ++P+LK T GVIIYQEQ+M IA  ++G+S  EAD+LRRAM
Sbjct: 585  IPTYITRRHNPNQVAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAM 644

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             KK +  ++ +++ FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +
Sbjct: 645  SKKNRAILESERQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMS 704

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYP  F A  ++  + + +K      +A+   I I+PP++N     +K  +  IY 
Sbjct: 705  YLKVHYPHYFYANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYL 764

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            SL  IKG+G  + + I+ E   + P+    DF  R+  +  NR++LESL+  GA D FG 
Sbjct: 765  SLGTIKGIGYQSVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGK 824

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LLQ++D +      VE++     E +F       + K + E+       +  + E+
Sbjct: 825  TRATLLQAIDQVLDLNSDVEQD-----EMLF----DLLTPKQSYEEKEELPDQLLSDYEK 875

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRKGSRI 1015
              LGFY S HP++      +K   K Y        G++ + +       +Q +T+ G  +
Sbjct: 876  EYLGFYISKHPVE------KKFEKKQYLGIFQLSNGSHYQPILVQFDHIKQIRTKNGQNM 929

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +VT ++     +   FP
Sbjct: 930  AFVTMNDGRTMMDGVIFP 947


>gi|73662373|ref|YP_301154.1| DNA polymerase III alpha chain [Staphylococcus saprophyticus subsp.
            saprophyticus ATCC 15305]
 gi|72494888|dbj|BAE18209.1| DNA polymerase III alpha chain [Staphylococcus saprophyticus subsp.
            saprophyticus ATCC 15305]
          Length = 1067

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 344/1027 (33%), Positives = 554/1027 (53%), Gaps = 86/1027 (8%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL +H++Y LL  ++ + +++ K A +   A+AITDTN L+   +F     AA I PI G
Sbjct: 4    HLNIHTTYDLLNSSIRIKDVVAKAAQEGYTALAITDTNVLYGLPQFYDACIAANIHPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              + I++ D L                ++L     G + L +L S + +    K+ V   
Sbjct: 64   --MTINLTDGLSEL-----------ETIVLAQNNLGLKDLFKLSSAIKM----KEKVETP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            + WL++  +  +I+             F N ++  E  +  F +     ++VN       
Sbjct: 107  IEWLKKYESHFVII-------------FKNVTESHEAIISNFSE--HAHVFVN------- 144

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
                +S+V     T +LP+V   ++ +L+ +D    D L A+A     S+ D      D+
Sbjct: 145  ---HKSKV-----TFDLPIVWAQSTRYLNSQD---SDTLSAMAAIKENSKLDLVSEQTDY 193

Query: 253  --YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE-- 308
              +L +  E+  +  D     E T ++   C   +  H  +LP++   +  + Q+ +   
Sbjct: 194  NEHLYSNVELQGLSID-DAVWEQTNQLETLCQAEMIYHQSLLPKY---KTPNQQQSDAFL 249

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             +L    +  L + L +  +        Y+ RL+ E  +I +M F  YFLIV+D IQ+AK
Sbjct: 250  WQLLADNLQQLNLPLNKKEL--------YQTRLEHEYQIITKMGFEDYFLIVSDLIQYAK 301

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N++ VGPGRGS AGS+ +Y L IT IDP+ ++LLFERFLNP+R++MPD DIDF    RD
Sbjct: 302  NNDVLVGPGRGSAAGSLVSYLLNITTIDPIEYNLLFERFLNPERVTMPDIDIDFEDTHRD 361

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +VI+YVQ KYG   VA I+TFG L A+A  RDVGR +      ++ + KLIP+     ++
Sbjct: 362  KVIQYVQEKYGETHVAGIVTFGHLLARAVARDVGRIMGFEEITLNEISKLIPHKLG--IT 419

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            L        F++    +   +R  +I +KLEGL RH STHAAGI+I D PL +  P+   
Sbjct: 420  LDDAYSQEPFKQFVHRNHRHERWFDICKKLEGLPRHTSTHAAGIIINDHPLYEYAPL--T 477

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHE 607
            +     +TQ+ M   E+ GL+K DFLGL+ L+++ + +  +     + VD+  IPFDD  
Sbjct: 478  LGDTGLLTQWTMTESERIGLLKIDFLGLRNLSIIHQIVKQVKHDLNIDVDIEQIPFDDEN 537

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             +HLL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y +R++ 
Sbjct: 538  VFHLLSQGDTTGIFQLESDGIRNVLKKLQPEHFEDIVAVTSLYRPGPMEEIPTYISRRHH 597

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             EK+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ 
Sbjct: 598  PEKVQYLHPDLEPILKTTYGVIIYQEQIMQIASKFANFSYGEADILRRAMSKKNRAVLES 657

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F++GA KNG  + ++  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HY   F
Sbjct: 658  ERQHFVNGALKNGYDENLSKQIFDLILKFADYGFARAHAVSYSKIAYIMSYLKVHYANYF 717

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             A  ++  + + +K  +   +A+   I I+PP++N     +K     IY S+ AIKGVG 
Sbjct: 718  YANILSNAIGSEKKTAQMIDEAKHQKINILPPNINYSHWFYKATKKGIYLSIGAIKGVGY 777

Query: 848  TTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
             + + I+E   A+  +    DF  R+  +   R++LESL+  GA D FG +R  LL ++D
Sbjct: 778  QSVKLIVEERKANGFYKDFFDFTRRIPKRIKTRKLLESLILVGAFDTFGKNRATLLNAID 837

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             +      +E++       IF       + K + E+       V  E E+  LGFY S H
Sbjct: 838  QVLDDISDIEQDGF-----IF----DVLTPKASYEEKEELPDHVLSEYEKEYLGFYVSTH 888

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P++  K   +K  +  Y+ + A    +N  +   V   ++ +T+ G  + +VT ++    
Sbjct: 889  PVE--KAFEQKQYLGIYKLANAQ---DNKPIFVQVDQFKRIRTKNGQNMAFVTLNDGINN 943

Query: 1027 YEANFFP 1033
             +   FP
Sbjct: 944  LDGVVFP 950


>gi|223985834|ref|ZP_03635875.1| hypothetical protein HOLDEFILI_03181 [Holdemania filiformis DSM
            12042]
 gi|223962224|gb|EEF66695.1| hypothetical protein HOLDEFILI_03181 [Holdemania filiformis DSM
            12042]
          Length = 1008

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 354/1000 (35%), Positives = 537/1000 (53%), Gaps = 88/1000 (8%)

Query: 43   AIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            AIA TD N +  A+EF +      I+PI G ++ + +++             TV ++ +L
Sbjct: 15   AIACTDENVMHGAMEFWKCCQREQIKPIFGLEILVKIEEE------------TV-AMTVL 61

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
                EG+  L+   SR   L  G+ +  + L  +Q    E  +++  G  G      F  
Sbjct: 62   ARDDEGFGGLMAASSR---LCDGQDA--LTLDQIQPY-LEHWVLIVYGEGG------FAE 109

Query: 163  SSQVAEKRLLTFKKLFGDRL-YVNLQ----------RHRGYDRYRESQVVQLAYTHELPL 211
            S  + E R     +  GD+L ++  Q              + + +   + Q+    E+P 
Sbjct: 110  SELIQEDR-----RGLGDKLGWLKTQLPLFYMAVSFNDASFWKLKNILLKQVCAAQEIPT 164

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            VA +   +   ED     ++  +  S  ++ K  P V    YL+  +EM  ++    E L
Sbjct: 165  VALSKIYYGQAEDARLFKIVNGIRLSKTINDKTLPSVN-GRYLRTPAEMEQLYD--AEDL 221

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
            + +  IA  C+  +      LP F    C      ++  L    +AGL+ R  QG     
Sbjct: 222  QASDHIASICNVTMTQAKTTLPAF---PCPQGVSSKQY-LTQLCLAGLKKR-RQG----- 271

Query: 332  YHAQD--YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
               +D  Y +RL +EL+VI  M F  YFLIV DFI++A+K  I VGPGRGS AGS+ AY 
Sbjct: 272  -QPEDPAYLRRLKYELDVILTMHFEDYFLIVWDFIRFARKAGIYVGPGRGSAAGSLVAYV 330

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L IT +DPL + LLFERFLNP+R+SMPD D DF  +RRDEVI+YV  KYG + VA I TF
Sbjct: 331  LGITHVDPLEYGLLFERFLNPERISMPDIDTDFPDNRRDEVIQYVAEKYGEKHVAHIATF 390

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSV 508
            G+L AK  LRDVGR L++P  +VD LCK +P      ++LQ AI  + RF +   AD   
Sbjct: 391  GTLGAKQVLRDVGRVLEIPLREVDMLCKAVPF--GVKMTLQTAIQQNPRFHQMVYADRRY 448

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
              L E + ++EGL RH STHAAGIV     L Q+ P  R + +DL  TQ+ M+ +E+ GL
Sbjct: 449  QELYETALRIEGLPRHVSTHAAGIVFSRAELDQICPTIR-IENDLLSTQYTMEHLEELGL 507

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            IK DFLGL+ LT++   +  + QR   +++  IP DD +TY LL    T+GIFQLES GM
Sbjct: 508  IKMDFLGLRNLTIIDDIVQRVHQRQ-PLNIMKIPLDDAKTYALLRKVDTVGIFQLESEGM 566

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            +  +  MQP C +DI+A ++L+RPGP++NI  Y   +     +  +HP + P+L+ T GV
Sbjct: 567  KNLIRKMQPACFDDIVATIALFRPGPMENIPEYLRCRTDPSAVHYLHPDLKPILESTYGV 626

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            +IYQEQ+MQ AQ ++G+SL+ ADVLRRAM KK  +E+   ++ FI G  + G  + +A  
Sbjct: 627  MIYQEQIMQTAQKMAGFSLARADVLRRAMSKKKLKELQSLQKEFIGGCIQQGYEEKLANE 686

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++EL+ KFA+YGFNKSH+ AY +++YQ +++K ++P+EF  + +   +    K  ++  +
Sbjct: 687  VYELILKFANYGFNKSHSVAYGLLAYQLSYLKANFPLEFYTSLLNSVIGAEGKTAEYIDE 746

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLED 867
             R+  +QI+ PSVN   V + +    I Y L  IK +G+     ++ E   + PF    D
Sbjct: 747  CRRHQVQILGPSVNASDVRYLIEGEAIRYPLLGIKNIGSAACMQLLAERQENGPFQDYYD 806

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F +R+ +++LNR+++E+L+ AGALD F  +R  L  SL+    Y   V +        I 
Sbjct: 807  FVTRMLTRRLNRKMIEALIDAGALDEFHANRQSLRLSLEEAISYGDLV-RIEVGGQVRI- 864

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP-LDVYK-------PILRKMG 979
              + G  S  + +   + E+   R E E+  LGFY   HP L V K       P++R M 
Sbjct: 865  --DLGLVSKPVMV--MAKEDPIERSEREREALGFYLCSHPILQVKKKFQIQTEPLVRLMA 920

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
              G+ E    ++             +Q +T+KG  + +  
Sbjct: 921  KGGFIEGFVYLQ-----------RVRQHRTKKGDLMAFAV 949


>gi|289550541|ref|YP_003471445.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
            HKU09-01]
 gi|289180073|gb|ADC87318.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
            HKU09-01]
          Length = 1064

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 344/1025 (33%), Positives = 541/1025 (52%), Gaps = 83/1025 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL +H+SY LL  +L + +++ K +     A+AITDTN L+   +F     +A I+PI 
Sbjct: 3    VHLNIHTSYDLLNSSLKIEDVVAKASKQGYTALAITDTNVLYGYPKFYDACVSANIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + + + D L                VL     EG   + +L S + + D+      +
Sbjct: 63   G--MTVYITDGLSSV-----------EAVLYALNNEGLTAMYQLSSAIKMKDKS----LV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRHR 190
               W+ +  +   I+                  QV +K     +K   D  +YVN     
Sbjct: 106  PFEWITKYQSNIAIVF----------------KQVEQKHGHILEKFLNDEFIYVNSDSKN 149

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             +                LP V    + +L++ D +    L A+  +  +   +      
Sbjct: 150  DFG---------------LPRVWLRTARYLNDNDADTIAALQAIKLNEKLDLVNEMDNLN 194

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            +H+L+  SE+  +     E    T  +A +C+  +Q H  +LP+F  K  D+        
Sbjct: 195  EHFLE-ASELDELTVS-QEEWAQTQALAEKCNAEIQYHQSLLPQF--KTPDN-------- 242

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
              + + A L  +L Q       + ++Y  RL+ E  +I  M F  YFLIV+D I +AK +
Sbjct: 243  --SSSKAYLWKQLVQRLKTLQLNQKNYIDRLNHEFKIITNMGFEDYFLIVSDLIHYAKTH 300

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++++LLFERFLNP+R++MPD DIDF   RR+ V
Sbjct: 301  DVMVGPGRGSSAGSLVSYLLGITTIDPIKYNLLFERFLNPERVTMPDIDIDFEDTRRERV 360

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I YVQ KYG   V+ I+TFG L A+A  RDVGR +      +  + KLIP+     ++L 
Sbjct: 361  IEYVQQKYGEYHVSGIVTFGHLLARAVARDVGRIMGFDEITLAEISKLIPHQLG--ITLN 418

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               D+ +F++    +   ++  E+ +KLEGL RH STHAAGI+I D+PL   VP+   + 
Sbjct: 419  QAYDNDKFKDFVHRNYRHEKWFELCKKLEGLPRHTSTHAAGIIINDQPLFNFVPL--TIG 476

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + +  +     V++D+  IPFDD + +
Sbjct: 477  DTGLLTQWTMTEAERLGLLKIDFLGLRNLSIIHQIVTQVKYDLNVEIDIEAIPFDDPKVF 536

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R  L+ ++P   EDI+A+ SLYRPGP++ I  Y  R++   
Sbjct: 537  ALLSQGETTGIFQLESEGVRHVLQRLKPQHFEDIVAVTSLYRPGPMEEIPTYITRRHEPS 596

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +HP ++P+LK T GVIIYQEQ+MQIA   +G+S  EAD+LRRAM KK +  ++ ++
Sbjct: 597  KVAYLHPDLEPILKSTYGVIIYQEQIMQIASRFAGFSYGEADILRRAMSKKNRAVLENER 656

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A
Sbjct: 657  QHFVEGAQRNGYEEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFYA 716

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + N +K     ++A+   I I+PP +N     +K     IY SL AIKGVG  +
Sbjct: 717  NILSNVVGNEQKTAAIIEEAKIQGIAILPPHINHSHWFYKATPQGIYLSLGAIKGVGYQS 776

Query: 850  ARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I+    ++  F S +DF  R+  +   R++LESL+  GA D  G++R   LQ +D  
Sbjct: 777  VKTIVNNRKEQGNFKSFKDFSKRIPKRIKTRKLLESLILVGAFDSLGHNRATSLQMIDE- 835

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                     + T+   +IF     T  D+I  E+    N       E+  LGFY S HP+
Sbjct: 836  ------AVDDITHVGLDIFDIAGMTPKDEI--EEREELNDLQLSTYEKEYLGFYISQHPV 887

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            +  K   RK  +  Y  + A    N+  +       +Q +T+KG ++ +V  ++  K  +
Sbjct: 888  E--KMFHRKQFLGIYTLANA---ANHQPILVQFDQIKQIRTKKGQQMAFVVVNDGIKVID 942

Query: 1029 ANFFP 1033
               FP
Sbjct: 943  GVIFP 947


>gi|254556764|ref|YP_003063181.1| DNA-directed DNA polymerase III, alpha chain [Lactobacillus plantarum
            JDM1]
 gi|254045691|gb|ACT62484.1| DNA-directed DNA polymerase III, alpha chain [Lactobacillus plantarum
            JDM1]
          Length = 1116

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 339/1029 (32%), Positives = 551/1029 (53%), Gaps = 45/1029 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V LQV S++SLL    +++ ++          +A+TD + ++  ++F      A I PI
Sbjct: 4    YVPLQVLSTFSLLHSTSTVSELVQTAKQQGYSTLALTDVDIMYGIVDFYNACRQAEITPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  L++           G+       S+V+L     GYQ L+ L +          S+ 
Sbjct: 64   LGITLNL----------LGRELTAQTFSLVVLAKDQAGYQNLMRLSTMKQTATDAGLSLT 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
              L +L       L++LT      +      N+++ A   + T ++      LY+ +   
Sbjct: 114  AVLPYLNH-----LMVLTPAKDSELAALLLQNTAERAADWITTLRQAVDSASLYLGISLD 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            +       + +   A  H+LP+VA +   ++  +DY A  VL A+     + Q +  + +
Sbjct: 169  QA--PALRTTMTAFAQQHQLPVVALDPVDYVQAKDYFAVSVLRAIDRGQQIEQPESLQGI 226

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
               HYL+  + + + +  L   L   V      +   QV        + +      +   
Sbjct: 227  EGSHYLRPANTVTADYEQL--GLTTAVAATAEIAAQCQVELQFQQPQLPQFPTPAGQPAN 284

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR    AGL  RLA  AI      Q Y+ RLD EL VI +M F  YFLIV D + +A 
Sbjct: 285  VYLRQLCTAGLTERLA--AITPSVDQQAYQDRLDHELTVIDQMGFDDYFLIVWDVMNFAH 342

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLN  R +MPD D+D   +RR+
Sbjct: 343  EAQITTGPGRGSAAGSLVAYALNITDVDPLKYDLLFERFLNAKRANMPDIDLDIPDNRRE 402

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +V+ YV +KYGH+RVAQIITFG+L AK ALRDVGR   +   ++      IPN   H   
Sbjct: 403  QVLNYVHDKYGHDRVAQIITFGTLAAKQALRDVGRVFGLSTYEMSDWSAAIPNQ-LHITL 461

Query: 489  LQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             QA     R +   +AD S ++LL E +++LEGL RH STHAAG+V+  +PL Q+VP+  
Sbjct: 462  DQAYQGSQRLQNL-VADSSKNKLLFETARRLEGLPRHYSTHAAGVVLSQKPLIQIVPLQA 520

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
               + + +TQ+    +E  GL+K DFLGL+ L+L+  +L ++  Q G  + ++ I  +D 
Sbjct: 521  GSET-MMMTQYTKDTVEAVGLLKMDFLGLRNLSLMASALHYVQRQTGKPLAITKIDLNDP 579

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T G+FQ ES+G+R  L  + PD  E + A+ +LYRPGP++NI  +  RK 
Sbjct: 580  ATLKLFQAGDTTGVFQFESAGIRNVLRRLHPDNFELVAAVNALYRPGPMENIDHFIARKQ 639

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E +      + P+L  T G+++YQEQVMQ+A ++ G++L EAD+LRRAM KK +  +D
Sbjct: 640  GQEPVSYPAEQLAPILGPTYGILVYQEQVMQVAAVMGGFTLGEADLLRRAMSKKKRAVID 699

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +++FI+GA +NG S+ +A  +++ + +FA+YGFN+SHA AY+ ++++ A++K HY   
Sbjct: 700  KMRQQFIAGAQQNGYSEAVATQVYQYIEQFANYGFNRSHAIAYSKMAFELAYLKVHYSGA 759

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  + M   + N  K+K++  +ARQ  + I+PP +N     F      I + L++IKG+ 
Sbjct: 760  FFTSLMNSVLGNGTKLKQYLAEARQHQVAIIPPDINRSGQYFDWNGQAIVFGLSSIKGLR 819

Query: 847  TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  ++ E  A+ PF SL+ F  R+D+K L   ++++L++AGA D FG +R +LL S+
Sbjct: 820  RDFIASVLDERQANGPFKSLQQFMQRIDAKWLKADLMDALIYAGAFDHFGLNRAELLTSV 879

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              +   A+    + +     +F     + + KI  +K    +   R   E   LG Y SG
Sbjct: 880  PELMSSAELAGGSMS-----LFE----SLAPKI--KKQPELSLGERLAKEAEYLGVYVSG 928

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK-KTRKGSRIGWVTFSEPA 1024
            HP++ Y  + ++     + + V+T+         + ++K +  +T++G  + + T S+ +
Sbjct: 929  HPVETYDWLAQQR----HTQLVSTLTSEQPAQILVYITKVRTIRTKRGQPMAFATGSDLS 984

Query: 1025 KEYEANFFP 1033
             E +   FP
Sbjct: 985  GEIDLTIFP 993


>gi|116494849|ref|YP_806583.1| DNA polymerase III, alpha subunit [Lactobacillus casei ATCC 334]
 gi|116104999|gb|ABJ70141.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus casei
            ATCC 334]
          Length = 1098

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 336/1038 (32%), Positives = 547/1038 (52%), Gaps = 79/1038 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L++++    +    AIA+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q+ ID                    ++++    +GY +L+++ +++ L        
Sbjct: 62   LLGMQIAIDDA-----------------KLLVIAKNNQGYHQLLKISTQIMLATS----- 99

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               +++   +   GL+ +T   S P   A   N    A   L        + +YV L   
Sbjct: 100  --PVAFADLLPLTGLVAITLPDS-PFSAAVVANEHDRAVAFLQELDNKQPEAVYVGLD-- 154

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               + + ++ +   A + +L L+A  N L+    D     V+ A+   + ++ +D P +T
Sbjct: 155  ---EAHLDTPLPAFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRD-PVLT 210

Query: 250  P--DHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 +LK  ++  + F  + L  A++N  +IA +    +    P LP +          
Sbjct: 211  DAGPWWLKPPADASAPFVAAGLQAAVDNAAQIADQTDVTITFKQPQLPHY---------- 260

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFLIVA 361
            +  ++L +K       +LAQ  +A  +H Q     Y+QRL +EL+VI +M F+ YFL+V 
Sbjct: 261  QTPDQLASKDYL---TKLAQEGLANRFHDQPIPTTYQQRLQYELDVIIKMGFADYFLVVW 317

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A K NI  G GRGS  GS+ +YAL IT++DP+ + LLFERFLNP R  MPD D+D
Sbjct: 318  DVMNYAHKVNIMTGAGRGSATGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLD 377

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
               +RR E+I+YV +KYG   +AQIITFG+  AK A+RDV R   M   + +   + IPN
Sbjct: 378  IPDNRRGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPN 437

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 + L+   D S+  +  +AD   +R+L + +  LEGL RH STHAAGIV+ + PL+
Sbjct: 438  --LLHMDLKTAYDQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLT 495

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
              V + +     L  TQ     +E  GL+K DFLGLK L +L  +  F+ +  G   D  
Sbjct: 496  DTVAL-QPSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPK 554

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP +D  T  L     T G+FQ ES+G++  L  ++P   ED++A+ +LYRPGP++NI 
Sbjct: 555  QIPLNDQPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENID 614

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RKNG+E I    P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM K
Sbjct: 615  TFIARKNGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSK 674

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    +  ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+++++  A++
Sbjct: 675  KKSSVLAAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYL 734

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K H P  F AA M   M+N+ K++ + Q+A+   + ++ P +NT    FK+ D +I + L
Sbjct: 735  KVHDPAAFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGL 794

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             ++KG+    +  I  A  + PF    D   R++ K L     + L+ AGA D F  +R 
Sbjct: 795  LSVKGMRRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRA 854

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS----DKITLEKFSVENSSVRFENE 955
            Q + +LD +    +            +  ++ G FS      I + +     +  R E E
Sbjct: 855  QTIANLDELINSVK------------LAGNDVGLFSVLAPKPIVVPEMP---AGERLEEE 899

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
              VLG Y SGHP+D Y P+  +  +      V    G  + +  +V   ++ +T+ G  +
Sbjct: 900  ANVLGVYLSGHPVDKYAPLKTQYTLVNV---VDLAEGRTVDILLLVRHIKRIRTKTGKPM 956

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +         FP
Sbjct: 957  AFVDGQDATGTVSLTVFP 974


>gi|257055090|ref|YP_003132922.1| DNA polymerase III subunit alpha [Saccharomonospora viridis DSM
            43017]
 gi|256584962|gb|ACU96095.1| DNA polymerase III, alpha subunit [Saccharomonospora viridis DSM
            43017]
          Length = 1193

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 370/1079 (34%), Positives = 573/1079 (53%), Gaps = 69/1079 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA  +  + ++ +    PA+ +TD  N++ A +F Q+A  AGI+P
Sbjct: 5    SFVHLHVHTEYSMLDGAAKIAPLFEEASRLGMPAVGMTDHGNMYGADDFYQQAKKAGIKP 64

Query: 70   IIGCQLDIDMQDNLKM-------TNQGKT----------PFPTVPSIVLLVSTAEGYQRL 112
            IIG +  +  +            T Q  T                 + +L   A G + L
Sbjct: 65   IIGIEAYVAPESRFHKKPVFWGNTGQRSTDEFGEGGDVSGGGAYTHMTMLAENATGLRNL 124

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
              L S +  ++   +  R+    + E   EG+I  TG  SG +           A +   
Sbjct: 125  FTL-SSLASMEGYYRKPRMDRELIAEY-AEGIIATTGCPSGEVQTRLRLGQKDEALQAAA 182

Query: 173  TFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             ++ +FG +  ++ L  H    +R     ++++     L  +ATN+S +++++  E+H  
Sbjct: 183  DYRDIFGAENFFLELMDHGLAIERSVREGLLEIGKKLGLQPLATNDSHYVTKDQAESHSA 242

Query: 231  LMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQV- 287
            L+ V     +S   R +   D +YLK+  EM   + +++P A ++T+ IA R     +V 
Sbjct: 243  LLCVQSGKTLSDPTRFKFDGDGYYLKSAQEMREYWDTEVPGATDSTLLIAERVQSYEEVY 302

Query: 288  -HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
             H   +P+F   E       EE+ L ++ + GL  R   G I  GY      +R +FEL 
Sbjct: 303  AHRDRMPKFEVPEG----HTEESWLHHEVMRGLRWRFPDG-IPDGY-----VERAEFELE 352

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VIA+  F  YFL+VAD I +A+   I VGPGRGS AGS+ AYAL IT++DP+  +LLFER
Sbjct: 353  VIAQKGFPSYFLVVADLINYARSVGIRVGPGRGSAAGSLVAYALGITNLDPIPQNLLFER 412

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL- 465
            FLNP+R SMPD DIDF   RR E++RY   KYG +RVAQ+ITFG+++ KAA++D  R   
Sbjct: 413  FLNPERASMPDIDIDFDDRRRGEMVRYATEKYGADRVAQVITFGTIKTKAAIKDAARVHF 472

Query: 466  -QMPYSQVDRLCKLIPND-PAHPVSLQAIADDSRFREARLA--------DPSVDRLLEIS 515
             Q  Y+  D++ K +P    A  + L  I D    R    A        DP V  + E +
Sbjct: 473  GQPGYAIADKISKALPPPIMAKDIPLSGIVDPEHERYPEAAEVRSLIENDPEVKTIFETA 532

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP-VTQFNMKWIEKAGLIKFDFL 574
            + LEGL R+A  HA  +++   PL   +P+++  R D   +T ++    E  GL+K DFL
Sbjct: 533  RGLEGLIRNAGVHACAVIMSSEPLLGTIPLWQ--RDDGAIITGWDYPSCEAIGLLKMDFL 590

Query: 575  GLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT++  ++D + A RG ++DL  +  DD E Y LL    TLG+FQL+   MR  L 
Sbjct: 591  GLRNLTVIGDAIDNIRANRGEEIDLDRLGLDDPEAYKLLGRGDTLGVFQLDGGAMRDLLR 650

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK----ETQG 687
             MQP   EDIIA+++LYRPGP+       Y +RKNG+++I  IHP ++  LK    ET G
Sbjct: 651  RMQPTGFEDIIAVLALYRPGPMGMNAHNDYADRKNGRQQIKPIHPELEEPLKDILAETYG 710

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQ+MQIAQ ++GYS+  ADVLRRAMGKK KE ++K+ E F +G  +NG S     
Sbjct: 711  LIVYQEQIMQIAQKVAGYSMGRADVLRRAMGKKKKEVLEKEFEGFRAGMKENGFSDEAIQ 770

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             +++ +  FA Y FNKSHAA Y ++SY TA++K +YP E++AA +T   DN +K   +  
Sbjct: 771  ALWDTILPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAALLTSVGDNKDKSAVYLS 830

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLE 866
            + R+  I+++PP VN     F    + I + L AI+ VG      I+     K  + S  
Sbjct: 831  ECRRLGIRVLPPDVNESGRRFAAVGDDIRFGLGAIRNVGANVVDSIIATREKKGKYTSFT 890

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF    +    N+RV+ESL+ AGA D FG++R+ +++  ++       +++       ++
Sbjct: 891  DFLDSSELVVCNKRVIESLIKAGAFDSFGHTRLSMMRVHEDAVDAVVPLKRQEAMGQFDL 950

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQ-----------RVLGFYFSGHPLDVYKPIL 975
            F    G       ++  S   + ++F++E+            +LG Y S HPLD  + IL
Sbjct: 951  FQGFGGGGDGDTAVQTASSPLAHLKFDDEEYPRKQKLAYEREMLGLYVSAHPLDGAERIL 1010

Query: 976  RKMGIKGYEESVA-TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            RK   +     +A   +   I +A ++ S +++  +KG      T  +     E  FFP
Sbjct: 1011 RKHAKRPIAAILADPPKEGEIEIAGLITSLERRVNKKGEPWAICTVEDMDASLEVLFFP 1069


>gi|158335662|ref|YP_001516834.1| DNA polymerase III subunit alpha [Acaryochloris marina MBIC11017]
 gi|158305903|gb|ABW27520.1| DNA polymerase III alpha subunit [Acaryochloris marina MBIC11017]
          Length = 864

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 309/787 (39%), Positives = 468/787 (59%), Gaps = 34/787 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L +++ +      PAIA+TD   ++ A+   +     GI+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPDLVSRAVELNMPAIALTDHGVMYGAIGLIKTCKKQGIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL--VSRMYLLDQGKQ 127
           I+G ++ +    N  +T Q + P       V+L    +GYQ L++L  +S ++ +     
Sbjct: 62  IVGNEMYVI---NGDITKQERRPRY---HQVVLAKNKKGYQNLVKLTTISSLHGVQGRGI 115

Query: 128 SVRICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R C++  L E   EGLI+ +    G I +A       +A +    +K+LFGD  Y+ +
Sbjct: 116 FSRPCINKDLLEEHHEGLIVTSACLGGEIPQAIMKEKPDIARRIAKWYKELFGDDYYLEI 175

Query: 187 QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           Q H    DR    ++V++A   ++ ++ATN+S F+S  D E+HD L+ +    ++++  R
Sbjct: 176 QDHGSQEDRVVNVELVRIAQELDIKVIATNDSHFISCYDVESHDALLCIQTGKLITEDKR 235

Query: 246 PRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            R +   YLK   EM  +F D      + +A+  T+E+A +         P  P +   E
Sbjct: 236 LRYSGTEYLKTADEMALMFRDHLTDDVIADAIATTLEVAEKIEAYDIFRDPQSPDY---E 292

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             D     E  L      GL  R       +      Y++RL++EL ++ +M FS YFL+
Sbjct: 293 VPD-GYTAETYLEEVTWDGLLERC--NCKERSEVTDTYKERLEYELEMLQQMGFSTYFLV 349

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V D+I++A+ NNIPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D
Sbjct: 350 VWDYIKYARDNNIPVGPGRGSAAGSLVAYALGITNIDPVHHGLLFERFLNPERKSMPDID 409

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            DFC ++RD +I YV  KYG +RVAQIITF  + +KA L+DV R L +PY + DR+ KLI
Sbjct: 410 TDFCIEKRDAMIDYVTRKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADRMAKLI 469

Query: 480 PNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
           P     P  L+ +  D      F+E    DP V R L+++ ++EG  +    HAAG+VI 
Sbjct: 470 PVARGKPTKLKVMISDETPAPEFKEKYDKDPIVRRWLDMAIRIEGTNKTFGVHAAGVVIA 529

Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
             PL Q+VP+ R+    + +TQ+ M+ +E  GL+K DFLGLK LT++QK+ D L Q R +
Sbjct: 530 SEPLDQIVPLQRNNDGAV-ITQYFMEDLESLGLLKMDFLGLKNLTMIQKTTDLLKQNRQL 588

Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +D+  +P DD E + LL      G+FQLESSGMRQ ++ ++P  IEDI ++++LYRPGP
Sbjct: 589 DLDVDRVPMDDPEAFQLLARGELEGVFQLESSGMRQVVKDLKPSNIEDISSILALYRPGP 648

Query: 655 IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           +D  ++  + NRK+G+E I   H LI P+L+ET G+++YQEQ+M+IAQ ++GYSL +AD+
Sbjct: 649 LDAGLIPKFINRKHGRESIDYPHDLIKPILEETYGIMVYQEQIMKIAQDMAGYSLGQADL 708

Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           LRRAMGKK   EM+K +E FI GA++ G+ K ++ N+F+ +  FA+Y  +        V+
Sbjct: 709 LRRAMGKKKMAEMEKHREIFIDGAAEKGVDKKVSENLFDQMLLFAEYCLSYD----TPVL 764

Query: 773 SYQTAWM 779
           + +  W+
Sbjct: 765 TLEYGWL 771


>gi|118463133|ref|YP_882406.1| DNA polymerase III subunit alpha [Mycobacterium avium 104]
 gi|118164420|gb|ABK65317.1| DNA polymerase III alpha subunit [Mycobacterium avium 104]
          Length = 1177

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 339/996 (34%), Positives = 536/996 (53%), Gaps = 47/996 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFVHL  H+ YS+L+GA  +  +L ++     PA+ +TD  N+F A EF   A  AGI+P
Sbjct: 5   SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNAATKAGIKP 64

Query: 70  IIGCQLDID----------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
           IIG +  I           +  +        +   +   + ++   A G + L +L S  
Sbjct: 65  IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMVAENAAGLRNLFKLSSLA 124

Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
               Q  +  R+    + E   +G+I  TG  SG +         + A +    ++++FG
Sbjct: 125 SFEGQLGKWSRMDAELIAE-HADGIIATTGCPSGEVQTRLRLGQDREALESAAKWREIFG 183

Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            D  ++ L  H    ++     ++++     +P +ATN+  +++ +    H+ L+ V   
Sbjct: 184 ADNFFLELMDHGLSIEQRVRGGLLEIGRKLNIPPLATNDCHYVTRDAAHNHEALLCVQTG 243

Query: 238 TVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPI--LP 293
             +S  +R +   D +YLK+ +EM  I+ +++P A ++T+ IA R     +V  P   +P
Sbjct: 244 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDAEVPGACDSTLLIAERVQSYAEVWTPRDRMP 303

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            F   E  D    + + L ++ +AGL  R   G        QDY  R ++E+ VI    F
Sbjct: 304 VFPVPEGHD----QASWLHHEVMAGLRRRFPDGV------GQDYIDRAEYEIKVICDKGF 353

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             YFLIVAD I +A+  +I VGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R 
Sbjct: 354 PSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERP 413

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471
           S PD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAAL+D  R    Q  ++ 
Sbjct: 414 SAPDIDIDFDDRRRGEMVRYAADKWGSDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 473

Query: 472 VDRLCKLIPND-PAHPVSLQAIADDS--RFREAR------LADPSVDRLLEISQKLEGLY 522
            DR+ K +P    A  + L  I D S  R++EA         DP V  + + ++ LEGL 
Sbjct: 474 ADRITKALPPPIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLI 533

Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
           R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ LT++
Sbjct: 534 RNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTII 593

Query: 583 QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
             +LD + A RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP    
Sbjct: 594 GDALDNIKANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEFN 653

Query: 642 DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQV 695
           DI+A+++LYRPGP+       Y +RKNG++ I  IHP L +P+   L ET G+I+YQEQ+
Sbjct: 654 DIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLREILAETYGLIVYQEQI 713

Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           M IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++ +  
Sbjct: 714 MFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTILP 773

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
           FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  I 
Sbjct: 774 FAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGIT 833

Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDS 874
           ++PP VN   V+F      I + L A++ VG      +++   +K  F    D+ +++D 
Sbjct: 834 VLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIKTREEKGKFTDFSDYLNKIDI 893

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
              N++V ESL+ AGA D   ++R  L     +        +K       ++F  + G  
Sbjct: 894 SACNKKVTESLIKAGAFDSLKHARKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGDGGCT 953

Query: 935 SDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLD 969
               T++    E     +   E+ +LG Y SGHPL+
Sbjct: 954 ESVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLN 989


>gi|293977832|ref|YP_003543262.1| DNA-directed DNA polymerase III (polc) [Candidatus Sulcia muelleri
            DMIN]
 gi|292667763|gb|ADE35398.1| DNA-directed DNA polymerase III (polc) [Candidatus Sulcia muelleri
            DMIN]
          Length = 1405

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 330/1013 (32%), Positives = 538/1013 (53%), Gaps = 68/1013 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-- 62
            + K+  + H+  H+S+S+L   + +N+++ K       A+ ITD  NL     F  +   
Sbjct: 228  ISKNKYYSHIHNHTSFSILSSTIDINSLIKKTIEYDMDAVGITDYGNLMGVFNFINRIKN 287

Query: 63   ------CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
                      I+PIIGC+L I   D +K T++       + + V       GY  L +L 
Sbjct: 288  INDNFLVKKKIKPIIGCELYISYNDLIKKTDK-------IYNQVFFAKNKNGYYNLSKLC 340

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S  ++ D     + I    L E     LI ++G  +  I           AEK    +  
Sbjct: 341  SHGFI-DGYYSGIPIIGKNLVEKYKANLIAVSGDLNSEIPFTILNKGENEAEKVFKWWHN 399

Query: 177  LFGDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            LFGD  Y+ + RH   +    +Q++ + +    +  +  NN+ +LS++DY AHD+L+ V 
Sbjct: 400  LFGDDFYIEILRHGLKEEDHVNQILLKFSKKFNVKFIPQNNNFYLSQKDYHAHDILLCVK 459

Query: 236  HS----TVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            +S    T + +    R      + Y KN+++M ++FSDLPEA +N  E+  +  F    +
Sbjct: 460  NSQKQSTPIGKGRGFRFGFPNQEFYFKNKNQMYNLFSDLPEAFDNLKELIEKVEFYDITN 519

Query: 289  APILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY-RQRL 341
              +LP+F      I+K C  I+   ENE        L     +GA  K  +  D  ++++
Sbjct: 520  KILLPKFDIPNKWIKKYC--IKNNYENEY-------LRYLTYKGAKKKYLYINDIIKKKI 570

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            +FEL  I ++ + GYFLIV D I  AK   + VGPGRGS AGSV AY L IT+IDP++++
Sbjct: 571  EFELETIKKIGYPGYFLIVQDLICKAKNIGVEVGPGRGSVAGSVVAYCLGITNIDPIKYN 630

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNPDR+S+PD DIDF    R+++I +V NKYG  +VAQIIT+G + AK+++RD 
Sbjct: 631  LLFERFLNPDRISLPDIDIDFDDKGREKIIEWVVNKYGKNKVAQIITYGKMGAKSSIRDT 690

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV------------- 508
             R L +P  + D + K++PN     +  + I    +   +   +  +             
Sbjct: 691  ARVLNLPLLETDNIAKIVPNLSLKEIIKKNIKYLKKKLNSEELENVIKLKKIFKEKKTLQ 750

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
             ++L+ +  +EG  R+   HA GI+I    + + +P+     S+L +TQF+   +E+ GL
Sbjct: 751  SKILKQAMVIEGSVRNTGIHACGIIITPSDIKKYIPVSTTKYSNLLLTQFDNDVVEQVGL 810

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            +K DFLGLKTLT+++ +L       +K+ L  +   D +TY L     T+ +FQ ES GM
Sbjct: 811  LKMDFLGLKTLTIIKDTLYL-----IKIPLYEVNIYDVKTYKLFKKGETVAVFQYESPGM 865

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            ++ L  ++PD  +D+IA+ +LYRPGP+  I  +  RK+G EKI    P +   L+ET G+
Sbjct: 866  QKYLRRLKPDKFDDLIAMNALYRPGPMQYITNFIARKHGLEKISYDLPELKEFLEETYGI 925

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
             +YQEQVM I+Q +SG+S  +AD LR+A+GKK K+ +   K++FI G   NG SK I   
Sbjct: 926  TVYQEQVMLISQKISGFSKGDADFLRKAIGKKDKDVLINIKQKFIDGGINNGYSKNILEK 985

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            I++    FA Y FNKSH+  Y+ I+++TA++K HYP E++A+ ++  M N++ I  F ++
Sbjct: 986  IWKDWKSFASYAFNKSHSTCYSYIAFKTAYLKAHYPAEYMASVLSNNMQNLKNITFFIEE 1045

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLE 866
             ++  + ++ P +N     F V     I + + AIKG+G  +   I+ E      ++S+ 
Sbjct: 1046 CKRMGVIVLGPDINESNYKFTVNKMGYIRFGMGAIKGIGKYSVNSIIKERKLINRYNSIF 1105

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCF--GYSRMQLL------QSLDNIQKYAQWVEKN 918
                 VD + +N++VLE+LV +GA D F     R Q          ++ I K+    +  
Sbjct: 1106 CLIKNVDLRLVNKKVLENLVLSGAFDNFKKKIHRSQYFYEENGSNMIEKIIKFGVKYKNL 1165

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            + N   ++F++ K     +   +     N+    + E+ V+G Y + HPL+ Y
Sbjct: 1166 KINMKNSLFSNVKDIEILEPKFKNCKKWNNIDLLKKEKEVIGMYLTSHPLNEY 1218


>gi|282875876|ref|ZP_06284743.1| putative DNA polymerase III DnaE [Staphylococcus epidermidis SK135]
 gi|281294901|gb|EFA87428.1| putative DNA polymerase III DnaE [Staphylococcus epidermidis SK135]
          Length = 935

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 346/1025 (33%), Positives = 549/1025 (53%), Gaps = 111/1025 (10%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI G
Sbjct: 4    HLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              + I + D L           T+ ++VL     +G + L +L S + +  + K+ V I 
Sbjct: 64   --MTIYLTDGLY----------TIETVVL-AKNNQGLKSLYQLSSAIMM--RNKEEVPI- 107

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRHRG 191
              WL+    E LI++             F  ++++ K+++  F+      LY+N   +  
Sbjct: 108  -EWLKRYD-EHLIII-------------FKEAELSHKQVIDAFEG--KKELYLNHNSNNT 150

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKDRPRV 248
                R               V   ++ +L+E+D E    L A+  +T   ++ +K+    
Sbjct: 151  LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKE---- 191

Query: 249  TPDHYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDD----- 302
            T D +  +  E+ ++  +L E  + N  EI   C   +  H  +LP+F+    +      
Sbjct: 192  TLDEHFPSIEELQTL--NLSEDMITNANEIEELCQAEIAYHQSLLPQFVTPNGETSKDYL 249

Query: 303  ----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                I +  E EL +K                      Y  RL  E  +I  M F  YFL
Sbjct: 250  WTILIHRLREWELNDKT---------------------YFNRLKHEYKIITDMGFEDYFL 288

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV+D I +AK + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD 
Sbjct: 289  IVSDLIHFAKTHEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDI 348

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDF   RR++VI+YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KL
Sbjct: 349  DIDFEDTRREKVIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKL 408

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP+     ++L+       F+     +   +R  E+S+KLEGL RH STHAAGI+I D+P
Sbjct: 409  IPHKLG--ITLEEAYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQP 466

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVD 597
            L +  P+       L  TQ+ M   E+ GL+K DFLGL+ L+++ Q  L       + +D
Sbjct: 467  LFKFAPLTTGDTGLL--TQWTMAEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINID 524

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP+DD + + LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ 
Sbjct: 525  IEAIPYDDKKVFDLLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEE 584

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y  R++   ++  +HP ++P+LK T GVIIYQEQ+M IA  ++G+S  EAD+LRRAM
Sbjct: 585  IPTYITRRHNPNQVAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAM 644

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             KK +  ++ +++ FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +
Sbjct: 645  SKKNRAILESERQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMS 704

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYP  F A  ++  + + +K      +A+   I I+PP++N     +K  +  IY 
Sbjct: 705  YLKVHYPHYFYANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYL 764

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            SL  IKG+G  + + I+ E   + P+    DF  R+  +  NR++LESL+  GA D FG 
Sbjct: 765  SLGTIKGIGYQSVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGK 824

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LLQ++D +      VE++     E +F       + K + E+       +  + E+
Sbjct: 825  TRATLLQAIDQVLDLNSDVEQD-----EMLF----DLLTPKQSYEEKEELPDQLLSDCEK 875

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRKGSRI 1015
              LGFY S HP++      +K   K Y        G++ + +       +Q +T+ G  +
Sbjct: 876  EYLGFYISKHPVE------KKFEKKQYLGIFQLSNGSHYQPILVQFDHIKQIRTKNGQNM 929

Query: 1016 GWVTF 1020
             +VT+
Sbjct: 930  AFVTY 934


>gi|41407355|ref|NP_960191.1| DNA polymerase III subunit alpha [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395707|gb|AAS03574.1| DnaE1 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 1177

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 339/996 (34%), Positives = 536/996 (53%), Gaps = 47/996 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFVHL  H+ YS+L+GA  +  +L ++     PA+ +TD  N+F A EF   A  AGI+P
Sbjct: 5   SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNAATKAGIKP 64

Query: 70  IIGCQLDID----------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
           IIG +  I           +  +        +   +   + ++   A G + L +L S  
Sbjct: 65  IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMVAENAAGLRNLFKLSSLA 124

Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
               Q  +  R+    + E   +G+I  TG  SG +         + A +    ++++FG
Sbjct: 125 SFEGQLGKWSRMDAELIAE-HADGIIATTGCPSGEVQTRLRLGQDREALESAAKWREIFG 183

Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            D  ++ L  H    ++     ++++     +P +ATN+  +++ +    H+ L+ V   
Sbjct: 184 ADNFFLELMDHGLSIEQRVRDGLLEIGRKLNIPPLATNDCHYITRDAAHNHEALLCVQTG 243

Query: 238 TVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPI--LP 293
             +S  +R +   D +YLK+ +EM  I+ +++P A ++T+ IA R     +V  P   +P
Sbjct: 244 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDAEVPGACDSTLLIAERVQSYAEVWTPRDRMP 303

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            F   E  D    + + L ++ +AGL  R   G        QDY  R ++E+ VI    F
Sbjct: 304 VFPVPEGHD----QASWLHHEVMAGLRRRFPDGV------GQDYIDRAEYEIKVICDKGF 353

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             YFLIVAD I +A+  +I VGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R 
Sbjct: 354 PSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERP 413

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471
           S PD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAAL+D  R    Q  ++ 
Sbjct: 414 SAPDIDIDFDDRRRGEMVRYAADKWGSDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 473

Query: 472 VDRLCKLIPND-PAHPVSLQAIADDS--RFREAR------LADPSVDRLLEISQKLEGLY 522
            DR+ K +P    A  + L  I D S  R++EA         DP V  + + ++ LEGL 
Sbjct: 474 ADRITKALPPPIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLI 533

Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
           R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ LT++
Sbjct: 534 RNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTII 593

Query: 583 QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
             +LD + A RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP    
Sbjct: 594 GDALDNIKANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEFN 653

Query: 642 DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQV 695
           DI+A+++LYRPGP+       Y +RKNG++ I  IHP L +P+   L ET G+I+YQEQ+
Sbjct: 654 DIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLREILAETYGLIVYQEQI 713

Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           M IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++ +  
Sbjct: 714 MFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTILP 773

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
           FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  I 
Sbjct: 774 FAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGIT 833

Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDS 874
           ++PP VN   V+F      I + L A++ VG      +++   +K  F    D+ +++D 
Sbjct: 834 VLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIKTRNEKGKFTDFSDYLNKIDI 893

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
              N++V ESL+ AGA D   ++R  L     +        +K       ++F  + G  
Sbjct: 894 SACNKKVTESLIKAGAFDSLKHARKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGDGGCT 953

Query: 935 SDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLD 969
               T++    E     +   E+ +LG Y SGHPL+
Sbjct: 954 ESVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLN 989


>gi|218247224|ref|YP_002372595.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 8801]
 gi|257061441|ref|YP_003139329.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 8802]
 gi|218167702|gb|ACK66439.1| DNA polymerase III, alpha subunit [Cyanothece sp. PCC 8801]
 gi|256591607|gb|ACV02494.1| DNA polymerase III, alpha subunit [Cyanothece sp. PCC 8802]
          Length = 874

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 318/818 (38%), Positives = 484/818 (59%), Gaps = 75/818 (9%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  LN ++D+    + PAIA+TD   ++ A+E  +     GI+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLNALVDRAVELEMPAIALTDHGVMYGAIELMKVCRNKGIKP 61

Query: 70  IIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD- 123
           IIG ++     DI++    +  +Q           V+L    +GY+ L++L +  +L   
Sbjct: 62  IIGNEMYVINEDIEVNKRHRKYHQ-----------VVLAKNTQGYKNLVKLTTISHLKGI 110

Query: 124 QGKQS-VRICLSWLQEIGT---EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
           QGK    R C++  +E+ T   EGLI+ +    G + ++     ++ A+     ++KLF 
Sbjct: 111 QGKGIFARPCIN--KELLTQYHEGLIVTSACLGGEVPQSILAGDTKQAKTVAKWYQKLFK 168

Query: 180 DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
           D  Y+ +Q H    DR    ++V++A    + ++ATN+S F+S  D EAHD L+ +    
Sbjct: 169 DDYYLEIQDHGSQEDRIVNRELVKIARDLGIKIIATNDSHFISCYDVEAHDALLCIQTGK 228

Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCSFILQVHA-PI 291
           ++++  R R +   YLK+  EM  +F D LP     EA+ NT+E+A +      +   P 
Sbjct: 229 LITEDKRLRYSGTEYLKSAEEMALLFRDHLPDDVIEEAINNTLEVADKIEPYKNIFGEPR 288

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
           +P +            ++ +   A  GL  RL     ++G  +  Y++RL++EL ++ RM
Sbjct: 289 IPNYPVPSG----HTPDSYVEEIAWEGLLERLK--CRSRGEISDVYKERLEYELKMLQRM 342

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            FS YFL+V D+I++A+ N IPVGPGRGS AGS+ AY L IT+IDP+   LLFERFLNP+
Sbjct: 343 GFSTYFLVVWDYIKYARDNGIPVGPGRGSAAGSLVAYCLKITNIDPVHHGLLFERFLNPE 402

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R SMPD D DFC +RRDE+I+YV  KYG   VAQIITF  + +KA L+DV R L +PYS+
Sbjct: 403 RKSMPDVDTDFCIERRDEMIKYVTEKYGEANVAQIITFNRMTSKAVLKDVARVLDIPYSE 462

Query: 472 VDRLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHAST 527
            D++ K+IP     P  L+ +  D      F+E    DP V R L+++ ++EG  +    
Sbjct: 463 SDKMAKMIPVSRGKPTKLKVMISDETPCPEFKERYDNDPQVRRWLDMAIRIEGTNKTFGV 522

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           HAAG+VI   PL ++VP+ ++    + +TQ+ M+ +E  GL+K DFLGL+ LT +QK+ +
Sbjct: 523 HAAGVVISSEPLDEIVPLQKNNEGSV-ITQYFMEDLESLGLLKMDFLGLRNLTTIQKTAE 581

Query: 588 FLAQ-RGVKVDLSLIPF------------------DDHETYHLLTTKGTL-GIFQLESSG 627
            + Q R V++DL  +P                   +D +  H L  +G L GIFQLESSG
Sbjct: 582 LIKQNRKVELDLDQLPLEERKALQIIAKGTAKKLPEDIQKTHKLLERGDLEGIFQLESSG 641

Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
           M+Q ++ ++P  IEDI ++++LYRPGP+D  ++  + NRK+G+E I   H L++P+LKET
Sbjct: 642 MKQIVKDLKPSGIEDISSILALYRPGPLDAGLIPKFINRKHGQEPIKYEHRLLEPILKET 701

Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             V++YQEQ+M++AQ L+GYSL EAD+LRRAMGKK   EM+K +E+FI GA+KNG+ K I
Sbjct: 702 YAVLVYQEQIMKMAQDLAGYSLGEADLLRRAMGKKKISEMEKHREKFIEGAAKNGVIKEI 761

Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           A N+F  + +FA+Y            +SY T  +   Y
Sbjct: 762 AENLFTQMVQFAEY-----------CLSYDTEILTVEY 788


>gi|161833722|ref|YP_001597918.1| putative DNA polymerase III subunit alpha (dnaE)/DNA polymerase III,
            epsilon subunit (dnaQ) fusion [Candidatus Sulcia muelleri
            GWSS]
 gi|152206212|gb|ABS30522.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase III,
            epsilon subunit (dnaQ) fusion [Candidatus Sulcia muelleri
            GWSS]
          Length = 1411

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 329/1007 (32%), Positives = 535/1007 (53%), Gaps = 68/1007 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-------- 62
            + H+  H+S+S+L   + +N+++ K       A+ ITD  N+     F  +         
Sbjct: 236  YSHIHNHTSFSILSSTIDINSLIKKTIEYDMDAVGITDYGNMMGVFNFINRIKNINDNFL 295

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                I+PIIGC+L I   D +K T++       + + V       GY  L +L S  ++ 
Sbjct: 296  VKKKIKPIIGCELYISYNDLIKKTDK-------IYNQVFFAKNKNGYYNLSKLCSHGFI- 347

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            D     + I    L E     LI ++G  +  I           AEK    +  LFGD  
Sbjct: 348  DGYYSGIPIIGKNLVEKYKANLIAVSGDLNSEIPFTILNKGENEAEKVFKWWHNLFGDDF 407

Query: 183  YVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS---- 237
            Y+ + RH   +    +Q++ + +    +  +  NN+ +LS++DY AHD+L+ V +S    
Sbjct: 408  YIEILRHGLKEEDHVNQILLKFSKKFNVKFIPQNNNFYLSQKDYHAHDILLCVKNSQKQS 467

Query: 238  TVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
            T + +    R      + Y KN+++M ++FSDLPEA +N  E+  +  F    +  +LP+
Sbjct: 468  TPIGKGRGFRFGFPNQEFYFKNKNQMYNLFSDLPEAFDNLKELIEKVEFYDITNKILLPK 527

Query: 295  F------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY-RQRLDFELNV 347
            F      I+K C  I+   ENE        L     +GA  K  +  D  ++++ FEL  
Sbjct: 528  FYIPNKWIKKYC--IKNNYENEY-------LRYLTYKGAKKKYLYINDIIKKKISFELET 578

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I ++ + GYFLIV DFI  AK   + VGPGRGS AGSV AY L IT+IDP++++LLFERF
Sbjct: 579  IKKIGYPGYFLIVQDFICQAKNIGVEVGPGRGSVAGSVVAYCLGITNIDPIKYNLLFERF 638

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNPDR+S+PD DIDF    R+++I +V NKYG  +VAQIIT+G + AK+++RD  R L +
Sbjct: 639  LNPDRISLPDIDIDFDDKGREKIIEWVVNKYGKNKVAQIITYGKMGAKSSIRDTARVLNL 698

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV-------------DRLLEI 514
            P  + D + K++PN     +  + I    +   +   +  +              ++L+ 
Sbjct: 699  PLLETDNIAKIVPNISLKEIIKKNIKYLKKKLNSEELENVIKLKKIFKEKKTLQSKILKQ 758

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            +  +EG  R+   HA GI+I    + + +P+     S+L +TQF+   +E+ GL+K DFL
Sbjct: 759  AMVIEGSVRNTGIHACGIIITPSDIKKYIPVSTTKYSNLLLTQFDNDVVEQVGLLKMDFL 818

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            GLKTLT+++ +L       +K+ L  +   D +TY L     T+ +FQ ES GM++ L  
Sbjct: 819  GLKTLTIIKDTLYL-----IKIPLYEVNLYDVKTYKLFKKGETVAVFQYESPGMQKYLRR 873

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
            ++PD  +D+IA+ +LYRPGP+  I  +  RK+G EKI    P +   L+ET G+ +YQEQ
Sbjct: 874  LKPDKFDDLIAMNALYRPGPMQYITNFIARKHGLEKISYDLPELQEFLEETYGITVYQEQ 933

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VM I+Q +SG+S  +AD LR+A+GKK K+ +   K++FI G   NG SK I   I++   
Sbjct: 934  VMLISQKISGFSKGDADFLRKAIGKKDKDVLINIKQKFIYGGINNGYSKNILEKIWKDWK 993

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNKSH+  Y+ I+++TA++K HYP E++A+ ++  M N++ I  F ++ ++  +
Sbjct: 994  SFASYAFNKSHSTCYSYIAFKTAYLKAHYPAEYMASVLSNNMQNLKNITFFIEECKRMGV 1053

Query: 815  QIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRV 872
             ++ P +N     F V     I + + AIKG+G  +   I+ E      ++S+      V
Sbjct: 1054 IVLGPDINESNYKFTVNKMGYIRFGMGAIKGIGKYSVNSIIKERKLINRYNSIFCLIKNV 1113

Query: 873  DSKKLNRRVLESLVFAGALDCF--GYSRMQLLQS------LDNIQKYAQWVEKNRTNKHE 924
            D + +N++VLE+LV +GA D F     R Q          ++ I K+    +  + N   
Sbjct: 1114 DLRLVNKKVLENLVLSGAFDNFKKKIHRSQYFDEENGSNMIEKIIKFGVKYKNLKINMKN 1173

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            ++F++ K     +   +     N+    + E+ V+G Y + HPL+ Y
Sbjct: 1174 SLFSNVKDIEILEPKFKNCKKWNNIDLLKKEKEVIGMYLTSHPLNEY 1220


>gi|172038990|ref|YP_001805491.1| DNA polymerase III subunit alpha [Cyanothece sp. ATCC 51142]
 gi|171700444|gb|ACB53425.1| DNA polymerase III alpha subunit, N-terminal extein/intein
           [Cyanothece sp. ATCC 51142]
          Length = 874

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 319/816 (39%), Positives = 481/816 (58%), Gaps = 71/816 (8%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  LN ++D+    + PAIA+TD   ++ A+E  +     G++P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLNALIDRAVELEMPAIALTDHGVMYGAIELIKVCRNKGVKP 61

Query: 70  IIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD- 123
           IIG ++     DI+ +   K  +Q           V+L    +GY+ L++L +  +L   
Sbjct: 62  IIGNEMYVINGDIEEKKKYKKYHQ-----------VVLAKNTQGYKNLVKLTTISHLKGM 110

Query: 124 QGKQS-VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
           QGK    R C++  L E   EGLI+ +    G I +       + A+     +KKLF + 
Sbjct: 111 QGKGIFARPCINKELLEQYHEGLIVTSACLGGEIPQRILAGDIKEAKAVAKWYKKLFKED 170

Query: 182 LYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            Y+ +Q H    DR     + ++A   ++ +VATN+S F+S  D EAHD L+ +    ++
Sbjct: 171 FYLEIQDHGSVEDRIVNVAIAKIARDLDIKIVATNDSHFISCYDVEAHDALLCIQTGKLI 230

Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHA-PILP 293
           + + R R +   YLK+  EM  +F D      + EA+ NT+E+A +      +   P +P
Sbjct: 231 TDEKRLRYSGTEYLKSADEMRLLFRDHLSDDVIEEAVNNTLEVAEKIEPYKDILGEPRIP 290

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            +      +     ++ +   A  GL  RL     ++     +YR+RL++EL ++ +M F
Sbjct: 291 NYPVPAGHN----PDSYVEEIAWQGLLERLK--CRSRSEIPDEYRERLEYELKMLQQMGF 344

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
           S YFL+V D+I++A+ N+IPVGPGRGS AGS+ AY L IT+IDP+   LLFERFLNP+R 
Sbjct: 345 STYFLVVWDYIKYARDNHIPVGPGRGSAAGSLVAYCLKITNIDPVHHGLLFERFLNPERK 404

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
           SMPD D DFC +RRDE+I+YV  KYG   VAQIITF  + +KA L+DV R L +PY++ D
Sbjct: 405 SMPDVDTDFCIERRDEMIKYVTRKYGEANVAQIITFNRMTSKAVLKDVARVLDIPYAESD 464

Query: 474 RLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
           ++ K+IP     P  L+ +  D      F+E    DP V R ++++ ++EG  +    HA
Sbjct: 465 KMTKMIPVSRGKPTKLKVMVSDETPTPEFKERYENDPLVRRWVDMAIRIEGTNKTFGVHA 524

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
           AG+VI   PL Q+VP+ ++    + +TQ+ M+ +E  GL+K DFLGL+ LT +Q++ D +
Sbjct: 525 AGVVISSEPLDQVVPLQKNNDGAV-ITQYYMEDLESLGLLKMDFLGLRNLTTIQRTADLI 583

Query: 590 AQ-RGVKVDLSLIPFD------------------DHETYHLLTTKGTL-GIFQLESSGMR 629
            Q +GV +DL  +P D                  D E  H L  KG L GIFQLESSGM+
Sbjct: 584 KQNQGVTLDLDQLPLDERKALEIIAKGTAKKLPPDVEKTHKLLEKGDLEGIFQLESSGMK 643

Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQG 687
           Q ++ ++P  IEDI ++++LYRPGP+D  ++  + NRK+G+E+I+  H L++P+LKET  
Sbjct: 644 QIVKDLKPSGIEDISSILALYRPGPLDAGLIPKFINRKHGREEIIYQHKLLEPILKETYA 703

Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
           V++YQEQ+M++AQ L+GYSL EAD+LRRAMGKK   EM K +E FI GA+KNG+S+ IA 
Sbjct: 704 VLVYQEQIMKMAQDLAGYSLGEADLLRRAMGKKKIAEMTKHREIFIDGATKNGVSQAIAE 763

Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           ++FE + KFA+Y            +SY T  +   Y
Sbjct: 764 DLFEQMIKFAEY-----------CLSYDTEILTVEY 788


>gi|319948506|ref|ZP_08022638.1| DNA polymerase III subunit alpha [Dietzia cinnamea P4]
 gi|319437803|gb|EFV92791.1| DNA polymerase III subunit alpha [Dietzia cinnamea P4]
          Length = 1181

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 347/1072 (32%), Positives = 556/1072 (51%), Gaps = 66/1072 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +S+L+G   ++ +  + +    PA+ +TD  N++ A +F ++A   G++PI
Sbjct: 5    FVHLHNHTEFSMLDGMAQIDPLFAEASRLGMPAVGMTDHGNMYGASDFYKQAKKTGVKPI 64

Query: 71   IGCQLDIDMQDNLK----------MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            IG +  +  +   +            +           + ++   A G + L  L S   
Sbjct: 65   IGIEAYVAPESRFEKKRILWGEKHQKSDDVAGSGAYTHMTMVAENATGLRNLFRLSSLAS 124

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179
               Q  +  R+    L E  +EG+I  +G  SG I         + A +    ++ +FG 
Sbjct: 125  YEGQLGKWARMDAEILAEY-SEGIIATSGCPSGEIQTRLRLGHIKEAYEAAEKWQSIFGK 183

Query: 180  DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            D  ++ L  H G D   R RE  +++L     +P + TN+  +++ E   AH+ ++ V  
Sbjct: 184  DNFFLELMDH-GIDIERRVRE-DLLKLGRDLGMPPLVTNDCHYVTREQAHAHEAMLCVQT 241

Query: 237  STVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPI--L 292
               ++ ++R +   D +YLK+  EM + + S++P A +NT+ IA R      +  P   +
Sbjct: 242  GKTLADENRFKFDGDGYYLKSAQEMRAQWDSEVPGACDNTLWIAERVQPYDDIWTPRDRM 301

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P+F   E +     E+  L  +   GL+ R   G        Q+Y +R +FEL VI    
Sbjct: 302  PKFPVPEGE----TEDTWLAKEVHKGLQWRFPDGV------PQEYIERANFELEVIKGKG 351

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            + GYFL+V D I+ A+   I VGPGRGS AG++ AYAL IT+IDP+   LLFERFLNP+R
Sbjct: 352  YPGYFLVVGDLIEHARSIGIKVGPGRGSAAGALVAYALKITNIDPIEHGLLFERFLNPER 411

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA--LQMPYS 470
             S PD DIDF   RR E+IRY  +K+G +++AQ+ITFG+++ KAA++D  R    Q  Y+
Sbjct: 412  PSAPDIDIDFDDRRRGEMIRYASDKWGADKIAQVITFGTIKTKAAIKDAARVNFGQPGYA 471

Query: 471  QVDRLCKLIPND-PAHPVSLQAIADDSRFREARLA--------DPSVDRLLEISQKLEGL 521
              DR+ K +P    A  + L  I D    R    A        DP V R+ + ++ LEG+
Sbjct: 472  IADRITKALPPAIMAKDIPLSGITDPKHERYGEAAEVRQLLETDPDVKRIYDTARGLEGM 531

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R A  HA  +++   PL  ++PM++  +    +T ++    E  GL+K DFLGL+ LT+
Sbjct: 532  VRQAGVHACAVIMSSEPLLDVIPMWKRAQDGAIITGWDYPSCEDIGLLKMDFLGLRNLTV 591

Query: 582  LQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +   L+ +   RG ++DL  +  DD  TY LL    TLG+FQL+S GMR+ L+ M+P   
Sbjct: 592  IGDCLENIKLNRGEEIDLDTLSTDDQATYDLLARGDTLGVFQLDSGGMRELLKRMKPTGF 651

Query: 641  EDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQ 694
             DI+A ++LYRPGP+     +N  +RKNGK+++V IHP L +P+   L ET G+I+YQEQ
Sbjct: 652  NDIVAALALYRPGPMGMGTHWNYADRKNGKQELVPIHPELEEPLREILGETHGLIVYQEQ 711

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            +M I++ L+GY+  EAD  R+AMGKK  E +  + E+F  G  + G SK     ++  + 
Sbjct: 712  IMAISRELAGYTAGEADGFRKAMGKKKAEVLAAEYEKFSGGMFERGFSKEAVDALWGTIE 771

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNKSHAA Y ++S+ T ++K +YP E++AA +T   D+ +K   +  + RQ  I
Sbjct: 772  PFASYAFNKSHAAGYGLVSFWTGYLKANYPAEYMAALLTSVGDDKDKAALYLSNCRQMGI 831

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVD 873
            +++PPSVN    +F      I + L A++ VG      I+ A  A   F    D+ +++D
Sbjct: 832  KVLPPSVNESLTNFASVGKDIRFGLGAVRNVGAQVVDSIVAAREAKGEFTDFSDYLAKID 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
                 ++V ESL+ AGA D  G+ R  L     +  +     +K       ++F     T
Sbjct: 892  QTACTKKVTESLIKAGAFDSLGHPRKGLFLVHADAVESVMSTKKAEAVGQFDLFGGGDDT 951

Query: 934  FSDKITLEKFSVENSSVRFENEQRV------LGFYFSGHPLDVYKPILRKMGIKGYEESV 987
             +D    + F+V      ++ +Q++      LG Y SGHPLD  +  L        + ++
Sbjct: 952  AADTGFGDVFAVRVPDEEWDTKQKLALEREMLGLYVSGHPLDGLEAALEAK----TDTNI 1007

Query: 988  ATI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ATI       G  + +  ++    ++  + G     VT  +     E  FFP
Sbjct: 1008 ATIHEGELPHGTAVTIGGIISGVDRRVNKNGEPWAIVTIEDFNGSVEVLFFP 1059


>gi|126660124|ref|ZP_01731243.1| DNA polymerase III subunit alpha [Cyanothece sp. CCY0110]
 gi|126618567|gb|EAZ89317.1| DNA polymerase III subunit alpha [Cyanothece sp. CCY0110]
          Length = 873

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 320/815 (39%), Positives = 481/815 (59%), Gaps = 70/815 (8%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  LN ++D+    + PAIA+TD   ++ A+E  +     G++P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLNALIDRALELEMPAIALTDHGVMYGAIELIKVCRNKGVKP 61

Query: 70  IIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD- 123
           IIG ++     DI+ +   K  +Q           V+L    +GY+ L++L +  +L   
Sbjct: 62  IIGNEMYVINGDIEEKKKYKKYHQ-----------VVLAKNTQGYKNLVKLTTISHLNGM 110

Query: 124 QGKQS-VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
           QGK    R C++  L E   EGLI+ +    G I +       + A+     ++K+F D 
Sbjct: 111 QGKGIFARPCINKELLEEYHEGLIVTSACLGGEIPQRILAGDIKEAKAIAKWYQKIFKDD 170

Query: 182 LYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            Y+ +Q H    DR     + ++A    + +VATN+S F+S  D EAHD L+ +  + ++
Sbjct: 171 FYLEIQDHGSVEDRIVNVAIAKIARDLGIKIVATNDSHFISCYDVEAHDALLCIQTAKLI 230

Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCSFILQVHAPILPR 294
           + + R R +   YLK+  EM  +F D LP     EA+ NT+E+A +      +  P +P 
Sbjct: 231 TDEKRLRYSGTEYLKSADEMRLLFRDHLPDDVIEEAINNTLEVAEKIEPYKILGEPRIPN 290

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
           +      +     ++ +   A  GL  RL     ++     DYR+RL++EL ++ RM FS
Sbjct: 291 YPVPAGHN----PDSYVEEIAWQGLLERLK--CRSRSEIPDDYRERLEYELKMLQRMGFS 344

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFL+V D+I++A+ N IPVGPGRGS AGS+ AY L IT+IDP+   LLFERFLNP+R S
Sbjct: 345 TYFLVVWDYIKYARDNRIPVGPGRGSAAGSLVAYCLKITNIDPVHHGLLFERFLNPERKS 404

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           MPD D DFC +RRDE+I+YV  KYG   VAQIITF  + +KA L+DV R L +PY++ D+
Sbjct: 405 MPDVDTDFCIERRDEMIKYVTRKYGEANVAQIITFNRMTSKAVLKDVARVLDIPYAESDK 464

Query: 475 LCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
           + K+IP     P  L+ +  +      F+E    DP V R ++++ ++EG  +    HAA
Sbjct: 465 MTKMIPVSRGKPTKLKVMVSNETPTPEFKERYENDPLVRRWVDMAIRIEGTNKTFGVHAA 524

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           G+VI   PL Q+VP+ ++    + +TQ+ M+ +E  GL+K DFLGL+ LT +Q++ D + 
Sbjct: 525 GVVISSEPLDQVVPLQKNNDGAV-ITQYYMEDLESLGLLKMDFLGLRNLTTIQRTADLIK 583

Query: 591 Q-RGVKVDLSLIPFD------------------DHETYHLLTTKGTL-GIFQLESSGMRQ 630
           Q +G ++DL  +P D                  D E  H L  KG L GIFQLESSGM+Q
Sbjct: 584 QNQGFELDLDQLPLDERKALEIIAKGTAKKLPPDVERTHKLLEKGDLEGIFQLESSGMKQ 643

Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            ++ ++P  IEDI ++++LYRPGP+D  ++  + NRK+G+E+I+  H L++P+LKET  V
Sbjct: 644 IVKDLKPSGIEDISSILALYRPGPLDAGLIPKFINRKHGREEIIYQHKLLEPILKETYAV 703

Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
           ++YQEQ+M++AQ L+GYSL EAD+LRRAMGKK   EM K +E FI GA+KNG+S+ IA +
Sbjct: 704 LVYQEQIMKMAQDLAGYSLGEADLLRRAMGKKKIAEMTKHREIFIDGATKNGVSQAIAED 763

Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           +FE + KFA+Y            +SY T  +   Y
Sbjct: 764 LFEQMIKFAEY-----------CLSYDTEILTVEY 787


>gi|58337253|ref|YP_193838.1| DNA polymerase III alpha-chain [Lactobacillus acidophilus NCFM]
 gi|227903838|ref|ZP_04021643.1| possible DNA-directed DNA polymerase [Lactobacillus acidophilus ATCC
            4796]
 gi|58254570|gb|AAV42807.1| DNA polymerase III alpha-chain [Lactobacillus acidophilus NCFM]
 gi|227868725|gb|EEJ76146.1| possible DNA-directed DNA polymerase [Lactobacillus acidophilus ATCC
            4796]
          Length = 1035

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 341/1032 (33%), Positives = 553/1032 (53%), Gaps = 60/1032 (5%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    ++++++        ++ +TD N  +  + F + A  AGI+P++G 
Sbjct: 6    LQNLSSFTLLDSPTKVSDLINTAKEKGYQSVGLTDINVTYGLVNFYELAKKAGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI-C 132
            Q+ ++          G         +++   +  GY  L+ L S + LL +  Q+ +I  
Sbjct: 66   QVRLN----------GLIDSTQKYDLIVFAKSDAGYHNLLRLSSAINLLTENGQNDKILT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +  ++ L+++   +   +  A F  + Q+    L   +KL  D +Y+ +   +  
Sbjct: 116  LKELTKYLSDLLVIVPANTKSEL-VALFETNQQLGSDFLRELRKLSSD-VYLGVYASKNG 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVTP 250
            + Y  + +  L     LPLVA  ++ +L   D      L ++ +S    Q   P  + + 
Sbjct: 174  ENYI-NYLRTLNKQFNLPLVAVEDTEYLKPRDQFLQKTLRSI-NSGQKLQDILPLAKQSG 231

Query: 251  DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             HYL +  +++  +   DL EA+ NT +IA+ C+  +    P+LP++ + +        E
Sbjct: 232  SHYLASAEDVLERYHQLDLDEAVNNTWKIAQECNANVVFQKPVLPKYRQNKF----TTSE 287

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR  A  GL+ R  Q  I       +Y++RL++EL +I +M F  YFLIV D + +  
Sbjct: 288  EYLRYLARTGLKDRFKQKTIPA-----EYQKRLNYELRIINQMGFDDYFLIVWDVVNYCH 342

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS  GS+ +YAL IT++DPL ++LLFERFLNP R  MPD D+D    +RD
Sbjct: 343  RVKITTGPGRGSACGSLVSYALKITEVDPLEYNLLFERFLNPARHEMPDIDLDIPDVQRD 402

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   ++++  + IP      +S
Sbjct: 403  TVIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEINKWARAIPYSKGK-IS 461

Query: 489  LQAIADDSRFREARL---ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            L+   ++SR  E RL   A      L + +  LEGL RH S HAAG+VI D  ++ +  +
Sbjct: 462  LKQAYEESR--ELRLLVDATQENKLLFQTAMNLEGLPRHYSIHAAGLVISDDSIAGISGL 519

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                   +PVTQ   K++E  GL+K DFLGL+ LT+L   L+ + ++G+K+D + IP DD
Sbjct: 520  QAGPLG-IPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLICEQGIKIDPNEIPLDD 578

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             ET  L     T  IFQ ES G+RQ L  + P+  ED++A+ +LYRPGP+ NI ++  RK
Sbjct: 579  SETLQLFQEGKTDAIFQFESGGIRQVLRKLHPNNFEDLVAVNALYRPGPMQNIDIFIARK 638

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+  +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ +
Sbjct: 639  NGQAGVKYPDPSLKRILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVI 698

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +++K +FISG  K G +K +   ++  + +FA+YGFN+SHA AY  +++  A++K HYP 
Sbjct: 699  EQEKSKFISGTIKKGHAKEVGERVYRYIEQFANYGFNRSHAVAYTKVAFWLAYLKVHYPA 758

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  A   L      K + +   A++ NI+++ P +N   +D+ + +  I   L AIKG+
Sbjct: 759  AFYTA--MLNSSTSVKAQSYIMQAQEANIKVVSPDINQSKLDYSLDNKNILVGLKAIKGL 816

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                A+ I  A+  KP+ SL DF  R+D K L    +E+L+ AGA D    +R +LL + 
Sbjct: 817  RMDFAQEI--ANNTKPYKSLNDFLRRIDPKFLQVDAIEALIMAGAFDQIEDNRNELLINC 874

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              I    Q   +N +     I        +DK T        ++ + E E++VLGF  + 
Sbjct: 875  KEIIANVQLTGQNMS--LSEILGDAPLKHADKPT--------NAEKAEMEEKVLGFTTTT 924

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK----KTRKGSRIGWVTFS 1021
             PL   +   RK   +   +         I  + + V K  K    +T+ G  + + +F+
Sbjct: 925  TPLVAVQKFARKFNARPLSQF-------QINESGISVGKLMKFKPIRTKNGKNMAFASFA 977

Query: 1022 EPAKEYEANFFP 1033
            + + E E   FP
Sbjct: 978  DSSSEQEVIIFP 989


>gi|328955785|ref|YP_004373118.1| DNA polymerase III, alpha subunit [Coriobacterium glomerans PW2]
 gi|328456109|gb|AEB07303.1| DNA polymerase III, alpha subunit [Coriobacterium glomerans PW2]
          Length = 1274

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 324/952 (34%), Positives = 509/952 (53%), Gaps = 52/952 (5%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC++     + L   ++     P +  ++LL     GY  L++LVS    +    
Sbjct: 119  IKPIFGCEVYFTPDETLARDHK-----PELYHLILLARNEVGYVNLMQLVSEA-AVSGFY 172

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               R+ L  L+    EG+I  +   +G I R     +++ A     TF+ LF     Y+ 
Sbjct: 173  YKPRVTLDNLRR-HREGIIGSSACLAGVIPRCIDEGNTEQAIIWAETFRDLFEPGSFYIE 231

Query: 186  LQRHR------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            +Q H         D     Q++++A    + ++ATN+  +L+  D    D+++ +  +  
Sbjct: 232  IQEHGITTDAGMTDEQLSHQLIEIAARVGVKVIATNDFHYLTRADAPVQDLMLCIGTNAK 291

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +   +R R+   + Y+K+  EM ++F   PEAL+NTVE+A RC   L   + ILPRF   
Sbjct: 292  MDDPNRMRMQGSEFYMKSEEEMRALFPYCPEALDNTVELAERCEVELDWDSIILPRF--- 348

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
               D  +  E++ R +   GL  R       +     +  +R ++E  VI    F+ YFL
Sbjct: 349  PGLDEGETHESQFRRECERGLARRYGDDWREREISGVNIAERFEYEYRVICDKGFAAYFL 408

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVAD+++WAK+N I VGPGRGS AG++ AYA+ IT  DPL   L+FERFL+P+R  MPD 
Sbjct: 409  IVADYVRWAKENGIGVGPGRGSAAGAIVAYAMDITTFDPLENGLMFERFLSPERAEMPDI 468

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF  +RR EV+ YV+ +YG ++V  +IT+ +++AK A+ D  R L  P S   RL K+
Sbjct: 469  DMDFDDERRLEVVEYVRGRYGADKVTHVITYSTIKAKQAINDAARVLDYPVSTGQRLSKM 528

Query: 479  IPNDPAHPVSLQAIADDSR--------FREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            I + P+  +S Q +    +        F +A   D    R+++ +  +EGL R    HA 
Sbjct: 529  ISSAPSVKLS-QVLKQQKKKEELYNPDFADAYRGDDDARRIIDAALSIEGLTRGEGVHAC 587

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFL 589
             ++I   P+++ VP   D +  + +TQ+    +   GL+K DFLGL+TLT++ K+  + L
Sbjct: 588  AVLICRDPVNEHVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKANIL 647

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            A  G +VD+  IPFDD   + L+    T G+FQ+ES+GM   ++ M+P   + ++AL++L
Sbjct: 648  ANFGTEVDVDAIPFDDPAIFELMAAGRTAGVFQVESAGMTATIKNMRPSEFKHVVALIAL 707

Query: 650  YRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            YRPGP+   +V  Y +R +G++K+V     + P+L+ET G I+YQEQVMQI+  +SG++ 
Sbjct: 708  YRPGPLGAGMVADYIDRMHGRKKVVYYDNRLAPLLEETYGTIVYQEQVMQISMHMSGFTA 767

Query: 708  SEADVLRRAMGKKIKEEM------------DKQKERFISGASKNGISKTIAVNIFELLAK 755
             E+D +R+A+ KK  E M            +  ++ +++GA +N  S+ IA  I+  + K
Sbjct: 768  GESDKVRKAVAKKHIELMETVVQHWDDGTDETMQDHWMNGAVRNDFSRAIAEQIWADVLK 827

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA+Y FNKSH+A YA++  QTAW+K HYP E++AA +T      EKI  +    R   I+
Sbjct: 828  FAEYAFNKSHSAGYAILVMQTAWLKAHYPYEYMAAVLTSFTGKTEKIVHYISACRHEGIE 887

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDS 874
            ++PP +N    DF      I + LA I+GVG   AR I+E       F +L D+  R+D 
Sbjct: 888  VLPPDINESNKDFTAVHEGIRFGLAGIRGVGEGVARTIIEERERGGAFKNLHDYMERLDP 947

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLD-----NIQKYAQWVEKNRTNKHENIF-- 927
               NRRV E+L+ AGA D  G+ R QL+  +D     NI        K R     + F  
Sbjct: 948  ACANRRVCEALIKAGAFDASGFPRRQLMGFIDKNNPENILDAVVRRNKTRATGQVSFFDV 1007

Query: 928  --AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                E   F  K+        +   +   E+ VLG Y S HPL  Y+  L +
Sbjct: 1008 LGDVEGSGFEVKVPEPDGQEWDRHTKLAQEREVLGIYVSDHPLRPYECALAR 1059



 Score = 42.0 bits (97), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 29/45 (64%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          +FVHL  HS YS+L+GA  + +++++      PA+A+TD   ++ 
Sbjct: 2  AFVHLHNHSEYSMLDGATRIEDMVERAVELGMPAVALTDHGYMYG 46


>gi|227515187|ref|ZP_03945236.1| possible DNA-directed DNA polymerase [Lactobacillus fermentum ATCC
            14931]
 gi|227086519|gb|EEI21831.1| possible DNA-directed DNA polymerase [Lactobacillus fermentum ATCC
            14931]
          Length = 1099

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 360/1044 (34%), Positives = 537/1044 (51%), Gaps = 95/1044 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L V S YSLLE  +    ++         A+ + D   L+ A+ F ++A  AG+ P
Sbjct: 2    GFVPLAVKSMYSLLEAPVRPAELVAVAKERGYQAVGLVDARVLYGAVNFVRRANQAGLHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG  L +   +                 + LL   A GYQ L  L +R  + D+  Q +
Sbjct: 62   VIGVSLPLTFAEG-------------TLDVTLLAKGAVGYQNLTRLSTRA-MTDRANQPL 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
             I    L+E+  + ++++         +      S+       T+ +L    D L +NL 
Sbjct: 108  TI--EDLREVSDDLVVIVA-------PQLMLLGVSEQ------TYAQLGEVADYLGINLD 152

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRP 246
                +       +  +A    LPL+A     +L+E+DY A  VL A+ A  T+       
Sbjct: 153  ----FTAAERQDLQAVAERCGLPLIAFEPVEYLNEDDYFATQVLRAIKAGHTIEDPLKAS 208

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALE--NTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            + T  H+L+   E+ + +     A     TV +A RC        P+LP F       + 
Sbjct: 209  QRTGRHWLRPAEEVAAAYRAAGLAEAAAQTVAVAERCQVHFADQTPVLPAFPTPAGQGV- 267

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR     GL  R   G  A      +Y+ RL+ EL VI +M F  YFLIV D +
Sbjct: 268  ---ADYLRELCQRGLAKRKLAGDPA------EYQARLEHELTVIHQMGFDNYFLIVWDLM 318

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A ++ I  GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLNP+R  MPD D+D   
Sbjct: 319  NFAHQHQILTGPGRGSAAGSLVAYALAITDVDPLQYGLLFERFLNPERAQMPDIDLDLPD 378

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI----- 479
            +RR+EV+ Y+ + YGHERVAQIITFGSL  K  LRDV R   +P  QVD L ++I     
Sbjct: 379  NRREEVLNYLHHHYGHERVAQIITFGSLGTKQVLRDVSRVFNLPKYQVDSLSQVIDRVKG 438

Query: 480  PN-------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            P+       + A PV  Q +A DS+          V  LLE++ KLEGL RH S HAAG+
Sbjct: 439  PHQTLADLLESAQPV--QNLARDSKL---------VACLLEVAAKLEGLPRHDSIHAAGV 487

Query: 533  VIGDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            V+   PL + VP+   +    + VTQF    +E  GL+K D LGL+ LT ++ +L+ + Q
Sbjct: 488  VLAAEPLIKTVPLQAGNEPGAMLVTQFEKDTVESLGLLKIDLLGLRNLTTVETALNLIHQ 547

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                 DL+ I  +D  T  L     T GIFQ ESSG+RQ L  + PD  E+I+A+ +LYR
Sbjct: 548  HQPDFDLTHIALNDRPTLALFDRGQTSGIFQFESSGIRQTLVNLHPDNFEEIVAVNALYR 607

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+DNI  +  RK G+E +      + P+L  T G+++YQEQVMQ+A ++ G+SL EAD
Sbjct: 608  PGPMDNINHFIARKKGQEAVNLPAKELAPILAPTYGILVYQEQVMQVAAVMGGFSLGEAD 667

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAM KK    M   KE F++GA+K G S  +A  +F  + +FA+YGFN+SHA AY+ 
Sbjct: 668  LLRRAMSKKKLATMASMKEAFLAGANKRGYSNAVAEQVFAYIDQFANYGFNRSHAVAYSK 727

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++++ A++K H+P EFLAA M  + D   K+  +  +A+Q  I    P++N       + 
Sbjct: 728  MAFEMAYLKVHFPAEFLAALMETDPDT-SKVWAYFSEAKQLGITTHGPAINQSQERVSLV 786

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            D  ++  L  IKG+     R I+E  +   P+  L D  +R+D+K     +   L+ AGA
Sbjct: 787  DQELWLGLDMIKGLRRDFIRAIIEERNQHGPYQDLPDLVNRLDAKWHKEALFVPLIDAGA 846

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            LD  GY+R ++ + L  I + A++                 G     +  ++      +V
Sbjct: 847  LDHLGYNRAEMAEGLKAILEGAEYA--------------GLGLGMAPVVAQRNEYP-LAV 891

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKT 1009
            R   E  VLG Y SGHP+  Y+ +  K+ +     +VA +R N  +RL  MV   ++  T
Sbjct: 892  RLAREHAVLGTYLSGHPVSQYQDLRTKLKLP----TVAQLRPNQRVRLVLMVTRMRKVTT 947

Query: 1010 RKGSR-IGWVTFSEPAKEYEANFF 1032
            ++  + + ++T S+     E   F
Sbjct: 948  KREHKPMAFLTASDETGAVEVTIF 971


>gi|86742845|ref|YP_483245.1| DNA polymerase III subunit alpha [Frankia sp. CcI3]
 gi|86569707|gb|ABD13516.1| DNA polymerase III, alpha subunit [Frankia sp. CcI3]
          Length = 1249

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 347/1076 (32%), Positives = 565/1076 (52%), Gaps = 69/1076 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA     +  + A    PA+ +TD  N+F A EF Q A +AG++P
Sbjct: 5    SFVHLHVHTEYSMLDGAAKTGLLFKEAAKLGMPAVGMTDHGNMFGAYEFYQGAKSAGVKP 64

Query: 70   IIG---------------------CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
            IIG                      Q D+D        + G         + +L + A G
Sbjct: 65   IIGIEAYLAPESRHHKRPVLWGERSQRDVDPAGEGGDVSGGGA----YTHMTMLAANAAG 120

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
             + L  L S +  ++   +  R+    + +  +EG+I  TG  SG +           A 
Sbjct: 121  LRNLFRL-SSIASIEGYYRKPRMDHELVSQY-SEGIIATTGCPSGEVQTRLRLGQFDKAL 178

Query: 169  KRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
                T++++FG D  ++ L  H    +R     ++ +     L  +ATN+S +++++   
Sbjct: 179  AAAATYQEVFGADNFFLELMDHGLPIERSVRQGLLDIGDKLGLRPLATNDSHYVTQDQAG 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFI 284
            +H+VL+ V     +    R +     +YLK+  EM +++ S++P A ++++ IA R    
Sbjct: 239  SHEVLLCVGTGKKLDDPTRFKFDGSGYYLKSSEEMRNLWDSEVPGACDSSLLIAERVESY 298

Query: 285  LQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
              V   +  +PR+     +     + + LR +   GL  R   G  A      D  +R+D
Sbjct: 299  DDVFKFVDRMPRYPVPAGE----TQLSWLRKEIDRGLTWRFPAGVPA------DVVERVD 348

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +E+ VI +M F  YFL+VAD  ++A+   I +GPGRGS  GS+ AY L IT+++P+  +L
Sbjct: 349  YEVGVIDKMGFPAYFLVVADICKFARDRGIGLGPGRGSATGSMIAYILGITELNPIEHAL 408

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            +FERFLNP+R+S PD D+DF + RR EVIRY+  +YG +RVAQI TFG+++AKAA++D  
Sbjct: 409  IFERFLNPERISPPDIDLDFDERRRGEVIRYITEQYGEDRVAQINTFGTIKAKAAIKDSC 468

Query: 463  RALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSRFREARLA--------DPSVDRLLE 513
            R L   Y+  D++ K +P D     + L  I D +  R    A        D  V ++++
Sbjct: 469  RVLGYDYALGDKISKAMPPDVMGQGIPLAGIFDPNHERYGEAAEVRAQYETDTKVRKVID 528

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             ++ LEGL R    HAAG+++   PL  ++P++R       +T F     E+ GL+K D 
Sbjct: 529  TARGLEGLTRGTGVHAAGVILCSEPLLDVLPIHRRDNDGAIITGFPFPQCEEMGLLKMDC 588

Query: 574  LGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL+ LT++  +++ + + R V +DLS +P +D + + LL    TLG+FQL+   MR  L
Sbjct: 589  LGLRNLTVIGDAIEAVKRNRNVDIDLSTLPLEDAKAFELLARGDTLGVFQLDGGPMRNLL 648

Query: 633  EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQ 686
              M P    DI A+++LYRPGP+  ++ + Y +RKNG+++I+ IHP     ++P+L ET 
Sbjct: 649  RLMAPTKFGDIAAVLALYRPGPMAANSHIEYADRKNGRKEILPIHPELAEALEPILGETY 708

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
             +++YQEQVM IA+ L+GYSL  AD+LRRAMGKK KE +DK+  RF +G  + G +    
Sbjct: 709  HLVVYQEQVMAIARELAGYSLGGADLLRRAMGKKKKEILDKEFARFSAGMKERGYTDAAV 768

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              ++++L  F+ YGFNKSH A Y V+S+ TA++K +YP EF+AA +T   D+ +K+  + 
Sbjct: 769  QALWDVLVPFSGYGFNKSHTAGYGVVSFWTAYLKANYPAEFMAALLTSVGDDKDKMAVYL 828

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSL 865
             + R+  IQ++PP VN   + F    + I + L A++ VG      I  A   K  ++S 
Sbjct: 829  AETRRMGIQVLPPDVNESDLRFGAVGDSIRFGLGAVRNVGENVVASIAAARRRKGAYESF 888

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DF  +VD    N+R ++SL+ AGA D  G+ R  L+   +N        ++       +
Sbjct: 889  ADFLQKVDIGVCNKRTIDSLIKAGAFDSLGHHRRVLVNVHENAIDAVIITKRAEAIGQFD 948

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRF------ENEQRVLGFYFSGHPLDVYKPILRKMG 979
            +F        ++       ++ S   +        E+ +LG Y S HPL+  +  L +  
Sbjct: 949  LFGDGGAGEEEESPGLGLDLDLSGPEWPKKELLAQERDMLGLYVSSHPLEGAERALDRHR 1008

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW--VTFSEPAKEYEANFFP 1033
                 +      G  +++A  ++SK  ++  K +   W  VT  +     E  FFP
Sbjct: 1009 DTRIVDLAEANDGTTVQIAG-IISKIDRRINKNTAKAWAIVTVEDLDASVEVLFFP 1063


>gi|86742759|ref|YP_483159.1| DNA polymerase III subunit alpha [Frankia sp. CcI3]
 gi|86569621|gb|ABD13430.1| DNA polymerase III, alpha subunit [Frankia sp. CcI3]
          Length = 1183

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 347/1076 (32%), Positives = 565/1076 (52%), Gaps = 69/1076 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA     +  + A    PA+ +TD  N+F A EF Q A +AG++P
Sbjct: 5    SFVHLHVHTEYSMLDGAAKTGLLFKEAAKLGMPAVGMTDHGNMFGAYEFYQGAKSAGVKP 64

Query: 70   IIG---------------------CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
            IIG                      Q D+D        + G         + +L + A G
Sbjct: 65   IIGIEAYLAPESRHHKRPVLWGERSQRDVDPAGEGGDVSGGGA----YTHMTMLAANAAG 120

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
             + L  L S +  ++   +  R+    + +  +EG+I  TG  SG +           A 
Sbjct: 121  LRNLFRL-SSIASIEGYYRKPRMDHELVSQY-SEGIIATTGCPSGEVQTRLRLGQFDKAL 178

Query: 169  KRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
                T++++FG D  ++ L  H    +R     ++ +     L  +ATN+S +++++   
Sbjct: 179  AAAATYQEVFGADNFFLELMDHGLPIERSVRQGLLDIGDKLGLRPLATNDSHYVTQDQAG 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFI 284
            +H+VL+ V     +    R +     +YLK+  EM +++ S++P A ++++ IA R    
Sbjct: 239  SHEVLLCVGTGKKLDDPTRFKFDGSGYYLKSSEEMRNLWDSEVPGACDSSLLIAERVESY 298

Query: 285  LQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
              V   +  +PR+     +     + + LR +   GL  R   G  A      D  +R+D
Sbjct: 299  DDVFKFVDRMPRYPVPAGE----TQLSWLRKEIDRGLTWRFPAGVPA------DVVERVD 348

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +E+ VI +M F  YFL+VAD  ++A+   I +GPGRGS  GS+ AY L IT+++P+  +L
Sbjct: 349  YEVGVIDKMGFPAYFLVVADICKFARDRGIGLGPGRGSATGSMIAYILGITELNPIEHAL 408

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            +FERFLNP+R+S PD D+DF + RR EVIRY+  +YG +RVAQI TFG+++AKAA++D  
Sbjct: 409  IFERFLNPERISPPDIDLDFDERRRGEVIRYITEQYGEDRVAQINTFGTIKAKAAIKDSC 468

Query: 463  RALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSRFREARLA--------DPSVDRLLE 513
            R L   Y+  D++ K +P D     + L  I D +  R    A        D  V ++++
Sbjct: 469  RVLGYDYALGDKISKAMPPDVMGQGIPLAGIFDPNHERYGEAAEVRAQYETDTKVRKVID 528

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             ++ LEGL R    HAAG+++   PL  ++P++R       +T F     E+ GL+K D 
Sbjct: 529  TARGLEGLTRGTGVHAAGVILCSEPLLDVLPIHRRDNDGAIITGFPFPQCEEMGLLKMDC 588

Query: 574  LGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL+ LT++  +++ + + R V +DLS +P +D + + LL    TLG+FQL+   MR  L
Sbjct: 589  LGLRNLTVIGDAIEAVKRNRNVDIDLSTLPLEDAKAFELLARGDTLGVFQLDGGPMRNLL 648

Query: 633  EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQ 686
              M P    DI A+++LYRPGP+  ++ + Y +RKNG+++I+ IHP     ++P+L ET 
Sbjct: 649  RLMAPTKFGDIAAVLALYRPGPMAANSHIEYADRKNGRKEILPIHPELAEALEPILGETY 708

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
             +++YQEQVM IA+ L+GYSL  AD+LRRAMGKK KE +DK+  RF +G  + G +    
Sbjct: 709  HLVVYQEQVMAIARELAGYSLGGADLLRRAMGKKKKEILDKEFARFSAGMKERGYTDAAV 768

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              ++++L  F+ YGFNKSH A Y V+S+ TA++K +YP EF+AA +T   D+ +K+  + 
Sbjct: 769  QALWDVLVPFSGYGFNKSHTAGYGVVSFWTAYLKANYPAEFMAALLTSVGDDKDKMAVYL 828

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSL 865
             + R+  IQ++PP VN   + F    + I + L A++ VG      I  A   K  ++S 
Sbjct: 829  AETRRMGIQVLPPDVNESDLRFGAVGDSIRFGLGAVRNVGENVVASIAAARRRKGAYESF 888

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DF  +VD    N+R ++SL+ AGA D  G+ R  L+   +N        ++       +
Sbjct: 889  ADFLQKVDIGVCNKRTIDSLIKAGAFDSLGHHRRVLVNVHENAIDAVIITKRAEAIGQFD 948

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRF------ENEQRVLGFYFSGHPLDVYKPILRKMG 979
            +F        ++       ++ S   +        E+ +LG Y S HPL+  +  L +  
Sbjct: 949  LFGDGGAGEEEESPGLGLDLDLSGPEWPKKELLAQERDMLGLYVSSHPLEGAERALDRHR 1008

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW--VTFSEPAKEYEANFFP 1033
                 +      G  +++A  ++SK  ++  K +   W  VT  +     E  FFP
Sbjct: 1009 DTRIVDLAEANDGTTVQIAG-IISKIDRRINKNTAKAWAIVTVEDLDASVEVLFFP 1063


>gi|315658035|ref|ZP_07910908.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus
            lugdunensis M23590]
 gi|315496925|gb|EFU85247.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus
            lugdunensis M23590]
          Length = 1067

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 343/1025 (33%), Positives = 541/1025 (52%), Gaps = 83/1025 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL +H+SY LL  +L + +++ K +     A+AITDTN L+   +F     +A I+PI 
Sbjct: 6    VHLNIHTSYDLLNSSLKIEDVVAKASKQGYTALAITDTNVLYGYPKFYDACVSANIKPIF 65

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + + + D L                VL     EG   + +L S + + D+      +
Sbjct: 66   G--MTVYITDGLSSV-----------EAVLYALNNEGLTAMYQLSSAIKMKDKS----LV 108

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRHR 190
               W+ +  +   I+                  QV +K     +K   D  +YVN     
Sbjct: 109  PFEWITKYQSNIAIVF----------------KQVEQKHEHILEKFLNDEFIYVNSDSKN 152

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             +   R               V    + +L++ D +    L A+  +  +   +      
Sbjct: 153  DFGLLR---------------VWLRTARYLNDNDADTIAALQAIKLNEKLDLVNEMDNLN 197

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            +H+L+  SE+  +     E    T  +A +C+  +Q H  +LP+F  K  D+        
Sbjct: 198  EHFLE-ASELDELTVS-QEEWAQTQALAEKCNAEIQYHQSLLPQF--KTPDN-------- 245

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
              + + A L  +L Q       + ++Y  RL+ E  +I  M F  YFLIV+D I +AK +
Sbjct: 246  --SSSKAYLWKQLVQRLKTLQLNQKNYIDRLNHEFKIITNMGFEDYFLIVSDLIHYAKTH 303

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++++LLFERFLNP+R++MPD DIDF   RR+ V
Sbjct: 304  DVMVGPGRGSSAGSLVSYLLGITTIDPIKYNLLFERFLNPERVTMPDIDIDFEDTRRERV 363

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I YVQ KYG   V+ I+TFG L A+A  RDVGR +      +  + KLIP+     ++L 
Sbjct: 364  IEYVQQKYGEYHVSGIVTFGHLLARAVARDVGRIMGFDEITLAEISKLIPHQLG--ITLN 421

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               D+ +F++    +   ++  E+ +KLEGL RH STHAAGI+I D+PL   VP+   + 
Sbjct: 422  QAYDNDKFKDFVHRNYRHEKWFELCKKLEGLPRHTSTHAAGIIINDQPLFNFVPL--TIG 479

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + +  +     V++D+  IPFDD + +
Sbjct: 480  DTGLLTQWTMTEAERLGLLKIDFLGLRNLSIIHQIVTQVKYDLNVEIDIEAIPFDDPKVF 539

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R  L+ ++P   EDI+A+ SLYRPGP++ I  Y  R++   
Sbjct: 540  ALLSQGETTGIFQLESEGVRHVLQRLKPQHFEDIVAVTSLYRPGPMEEIPTYITRRHEPS 599

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +HP ++P+LK T GVIIYQEQ+MQIA   +G+S  EAD+LRRAM KK +  ++ ++
Sbjct: 600  KVAYLHPDLEPILKSTYGVIIYQEQIMQIASRFAGFSYGEADILRRAMSKKNRAVLENER 659

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A
Sbjct: 660  QHFVEGAQRNGYEEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFYA 719

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + N +K     ++A+   I I+PP +N     +K     IY SL AIKGVG  +
Sbjct: 720  NILSNVVGNEQKTAAIIEEAKIQGIAILPPHINHSHWFYKATPQGIYLSLGAIKGVGYQS 779

Query: 850  ARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I+    ++  F S +DF  R+  +   R++LESL+  GA D  G++R   LQ +D  
Sbjct: 780  VKTIVNNRKEQGNFKSFKDFSKRIPKRIKTRKLLESLILVGAFDSLGHNRATSLQMIDE- 838

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                     + T+   +IF     T  D+I  E+ +  N       E+  LGFY S HP+
Sbjct: 839  ------AVDDITHVGLDIFDIAGMTPKDEI--EEQAELNDLQLSMYEKEYLGFYISKHPV 890

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            +  K   RK  +  Y  + A    N+  +       +Q +T+KG ++ +V  ++  K  +
Sbjct: 891  E--KMFHRKQFLGIYTLANA---ANHQPILVQFDQIKQIRTKKGQQMAFVVVNDGIKVID 945

Query: 1029 ANFFP 1033
               FP
Sbjct: 946  GVIFP 950


>gi|28378550|ref|NP_785442.1| DNA-directed DNA polymerase III, alpha chain [Lactobacillus plantarum
            WCFS1]
 gi|28271386|emb|CAD64291.1| DNA-directed DNA polymerase III, alpha chain [Lactobacillus plantarum
            WCFS1]
          Length = 1116

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 338/1029 (32%), Positives = 550/1029 (53%), Gaps = 45/1029 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V LQV S++SLL    +++ ++          +A+TD + ++  ++F      A I PI
Sbjct: 4    YVPLQVLSTFSLLHSTSTVSELVQTAKQQGYSTLALTDVDIMYGIVDFYNACRQAEITPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  L++           G+       S+V+L     GYQ L+ L +          S+ 
Sbjct: 64   LGITLNL----------LGRELTAQTFSLVVLAKDQAGYQNLMRLSTMKQTATDAGLSLT 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
              L +L       L++LT      +      N+++ A   + T ++      LY+ +   
Sbjct: 114  AVLPYLNH-----LMVLTPAKDSELAALLLQNTAERAADWITTLRQAVDSASLYLGISLD 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            +       + +   A  H+LP+VA +   ++  +DY A  VL A+     + Q +  + +
Sbjct: 169  QA--PALRTTMTAFAQQHQLPVVALDPVDYVQAKDYFAVSVLRAIDRGQQIEQPESLQGI 226

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
               H L+  + + + +  L   L   V      +   QV        + +      +   
Sbjct: 227  EGSHCLRPANTVTADYEQL--GLTTAVAATAEIAAQCQVELQFQQPQLPQFPTPAGQPAN 284

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR    AGL  RLA  AI      Q Y+ RLD EL VI +M F  YFLIV D + +A 
Sbjct: 285  VYLRQLCTAGLTERLA--AITPSVDQQAYQDRLDHELTVIDQMGFDDYFLIVWDVMNFAH 342

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLN  R +MPD D+D   +RR+
Sbjct: 343  EAQITTGPGRGSAAGSLVAYALNITDVDPLKYDLLFERFLNAKRANMPDIDLDIPDNRRE 402

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +V+ YV +KYGH+RVAQIITFG+L AK ALRDVGR   +   ++      IPN   H   
Sbjct: 403  QVLNYVHDKYGHDRVAQIITFGTLAAKQALRDVGRVFGLSTYEMSDWSAAIPNQ-LHITL 461

Query: 489  LQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             QA     R +   +AD S ++LL E +++LEGL RH STHAAG+V+  +PL Q+VP+  
Sbjct: 462  DQAYQGSQRLQNL-VADSSKNKLLFETARRLEGLPRHYSTHAAGVVLSQKPLIQIVPLQA 520

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
               + + +TQ+    +E  GL+K DFLGL+ L+L+  +L ++  Q G  + ++ I  +D 
Sbjct: 521  GSET-MMMTQYTKDTVEAVGLLKMDFLGLRNLSLMASALHYVQRQTGKPLAITKIDLNDP 579

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T G+FQ ES+G+R  L  + PD  E + A+ +LYRPGP++NI  +  RK 
Sbjct: 580  ATLKLFQAGDTTGVFQFESAGIRNVLRRLHPDNFELVAAVNALYRPGPMENIDHFIARKK 639

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E +      + P+L  T G+++YQEQVMQ+A ++ G++L EAD+LRRAM KK +  +D
Sbjct: 640  GQEPVSYPAEQLAPILGPTYGILVYQEQVMQVAAVMGGFTLGEADLLRRAMSKKKRAVID 699

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +++FI+GA +NG S+ +A  +++ + +FA+YGFN+SHA AY+ ++++ A++K HY   
Sbjct: 700  KMRQQFIAGAQQNGYSEAVATQVYQYIEQFANYGFNRSHAIAYSKMAFELAYLKVHYSGA 759

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  + M   + N  K+K++  +ARQ  + I+PP +N     F      I + L++IKG+ 
Sbjct: 760  FFTSLMNSVLGNGTKLKQYLAEARQHQVAIIPPDINRSGQYFDWNGQAIVFGLSSIKGLR 819

Query: 847  TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  ++ E  A+ PF SL+ F  R+D+K L   ++++L++AGA D FG +R +LL S+
Sbjct: 820  RDFIASVLDERQANGPFKSLQQFMQRIDAKWLKADLMDALIYAGAFDHFGLNRAELLTSV 879

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              +   A+ +     +  E++    K     +I+L +        R   E   LG Y SG
Sbjct: 880  PELMSSAE-LAGGSMSLFESLAPKIKK--QPEISLGE--------RLAKEAEYLGVYVSG 928

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK-KTRKGSRIGWVTFSEPA 1024
            HP++ Y  + ++     + + V+T+         + ++K +  +T++G  + + T S+ +
Sbjct: 929  HPVETYDWLAQQR----HTQLVSTLTSEQPAQILVYITKVRTIRTKRGQPMAFATGSDLS 984

Query: 1025 KEYEANFFP 1033
             E +   FP
Sbjct: 985  GEIDLTIFP 993


>gi|108800053|ref|YP_640250.1| DNA polymerase III subunit alpha [Mycobacterium sp. MCS]
 gi|119869179|ref|YP_939131.1| DNA polymerase III subunit alpha [Mycobacterium sp. KMS]
 gi|126435686|ref|YP_001071377.1| DNA polymerase III subunit alpha [Mycobacterium sp. JLS]
 gi|108770472|gb|ABG09194.1| error-prone DNA polymerase, DnaE-like / DNA polymerase III, alpha
            subunit [Mycobacterium sp. MCS]
 gi|119695268|gb|ABL92341.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium sp. KMS]
 gi|126235486|gb|ABN98886.1| error-prone DNA polymerase, DnaE-like / DNA polymerase III, alpha
            subunit [Mycobacterium sp. JLS]
          Length = 1191

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 347/1003 (34%), Positives = 546/1003 (54%), Gaps = 55/1003 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YS+L+GA  +  +L +    + PAI +TD  N+F A EF   A  AGI+PI
Sbjct: 12   FVHLHNHTEYSMLDGAAKVKPMLAEAQRLEMPAIGMTDHGNMFGASEFYNAATDAGIKPI 71

Query: 71   IGCQLDID----------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            IG +  I           +  +    +   +   +   + ++   A G + L +L S   
Sbjct: 72   IGIEAYIAPASRFETKRVLWGDPSQKSDDVSGSGSYTHMTMVAENATGLRNLFKLSSLAS 131

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
               Q  +  R+    + E   EG+I  TG  SG +         + A +    ++++FG 
Sbjct: 132  FEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHQREALEAAAKWREIFGP 190

Query: 181  R-LYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            +  ++ L  H G D   R RE  ++++     +P +ATN+  +++ +  + H+ L+ +  
Sbjct: 191  QNFFLELMDH-GLDIERRVREG-LLEIGQKLGIPPLATNDCHYVTRDASQNHEALLCIQT 248

Query: 237  STVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPI--L 292
               +S   R +   D +YLK+ +EM +++ S +P A ++T+ IA R      V AP   +
Sbjct: 249  GKTLSDPTRFKFDGDGYYLKSAAEMRALWDSQVPGACDSTLLIAERVQSYADVWAPRDRM 308

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P F   E  D    + + L ++ +AGL+ R +  A++ G    DY +R ++E+ VI    
Sbjct: 309  PIFPVPEGHD----QASWLHHEVMAGLKRRFS--AVSGGVVPNDYIERAEYEIKVICDKG 362

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F  YFLIVAD I +AK  +I VGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R
Sbjct: 363  FPSYFLIVADLINYAKSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPER 422

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYS 470
             S PD DIDF   RR E++RY  NK+G +RVAQ+ITFG+++ KAAL+D  R    Q  ++
Sbjct: 423  PSAPDIDIDFDDRRRGEMLRYAANKWGSDRVAQVITFGTIKTKAALKDSARVHYGQPGFA 482

Query: 471  QVDRLCKLIPND-PAHPVSLQAIADDS--RFREARL------ADPSVDRLLEISQKLEGL 521
              DR+ K +P    A  + +  I D +  R++EA         DP V  + E ++ LEGL
Sbjct: 483  IADRITKALPPPIMAKDIPVSGITDPTHERYKEAAEVRALIDTDPDVRTIYETARGLEGL 542

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R+A  HA  +++   PL   +P++R  +    +T ++    E  GL+K DFLGL+ LT+
Sbjct: 543  VRNAGVHACAVIMSSEPLIDAIPLWRRPQDGAVITGWDYPSCEAIGLLKMDFLGLRNLTI 602

Query: 582  LQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +   ++ + A RGV +DL  +  DD + Y LL    TLG+FQL+   MR  L  MQP   
Sbjct: 603  IGDCIENIKANRGVDLDLESLALDDPKAYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEF 662

Query: 641  EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQ 694
             DI+A+++LYRPGP+       Y +RKNG++ I  IHP ++  LK    ET G+I+YQEQ
Sbjct: 663  NDIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKEILAETYGLIVYQEQ 722

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            +M IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++ + 
Sbjct: 723  IMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYQGFREGMTANGFSEAAVKALWDTIL 782

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  I
Sbjct: 783  PFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRRLGI 842

Query: 815  QIMPPSVNTPCVDF-KVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV 872
             ++PP VN    +F  VGD+ I + L A++ VG      ++   A+K  +    D+ +++
Sbjct: 843  TVLPPDVNESVQNFASVGDD-IRFGLGAVRNVGANVVASLVNTRAEKGKYSDFSDYLNKI 901

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D    N++V ESL+ AGA D  G+ R  L     +        +K       ++F    G
Sbjct: 902  DIAACNKKVTESLIKAGAFDSLGHPRKGLFLIHTDAVDSVLGTKKAEAMGQFDLFGSGDG 961

Query: 933  TFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLD 969
            + +D      FS++     +E+      E+ +LG Y SGHPL+
Sbjct: 962  SGADAGD-SAFSIKVPDEEWEDKHKLALEREMLGLYVSGHPLN 1003


>gi|317508659|ref|ZP_07966315.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974]
 gi|316253062|gb|EFV12476.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974]
          Length = 1180

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 350/1014 (34%), Positives = 546/1014 (53%), Gaps = 81/1014 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFVHL  H+ YS+L+G   +N + ++ A    PA+ +TD  N++ A EF + A   G++P
Sbjct: 4   SFVHLHNHTEYSMLDGHAQVNAMFEEAARLGMPAVGMTDHGNMWGAAEFYRAAKKYGVKP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPS--------------IVLLVSTAEGYQRLIEL 115
           IIG +  +            K  F   PS              + ++   A+G   L++L
Sbjct: 64  IIGIEAYLAPSSRFST----KREFWGQPSQRSDDVSGSGAYTHMTMVAKDAQGLHNLMKL 119

Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            S   +  Q  +  R+    L E G  G+I  TG  SG +         + A +    F+
Sbjct: 120 SSLASIEGQLGKWPRMDAEILAEHG-RGIIATTGCPSGEVQTKLRLGQFEEACEAAGRFQ 178

Query: 176 KLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
           ++FG +  Y+ L  H G D   R RE  +++L    ++P +ATN+  ++ +E    H++L
Sbjct: 179 EIFGKENFYLELMDH-GIDIERRVRE-DLLRLGERLKIPPLATNDCHYVKQEHARGHEIL 236

Query: 232 MAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQV-- 287
           + V     +S   R +   D +YLK+   M + + S +P A +NT+ +A +     +V  
Sbjct: 237 LCVQTGKTMSDPGRFKFDGDGYYLKSAELMRAAWDSQVPGACDNTLRVAEQVGSYDEVWE 296

Query: 288 ---HAPILPRFIEKECDDIQKEEENELRNKAV-AGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                P+ P            E++N    K V  GLE R   G       A++YR R  F
Sbjct: 297 KRDRMPVFPV--------PDGEDQNSWLAKEVDRGLERRFPDGV------AEEYRARAAF 342

Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
           EL+VI +  F  YFL+V D I +A+   I VGPGRGS AGS+ +YAL IT++DP+   LL
Sbjct: 343 ELDVIKQKGFPSYFLVVGDLIAYARSVGIRVGPGRGSAAGSLVSYALGITNLDPIEHGLL 402

Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           FERFLNP+R S PD DIDF   RR E+IRY   K+G +RVAQ+ITFG+++ KAA++D  R
Sbjct: 403 FERFLNPERPSAPDIDIDFDDRRRGEMIRYASEKWGADRVAQVITFGTIKTKAAIKDSAR 462

Query: 464 AL--QMPYSQVDRLCKLIPND-PAHPVSLQAIAD--DSRFREAR------LADPSVDRLL 512
            L  Q  +S  DR+ K +P    A  + L  I D    R++EA        +DP V ++ 
Sbjct: 463 VLHGQPGFSIADRITKALPPAIMAKDIPLSGITDPEHERYKEAAEIRELIASDPDVAKIY 522

Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
           E +  LEGL R+A  HA  I++ + PL   +P+++  +    +T ++    E  GL+K D
Sbjct: 523 ETALSLEGLIRNAGVHACAIIMSNEPLIDTIPLWKRAQDGAIITGWDYPSCEDIGLLKMD 582

Query: 573 FLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
           FLGL+ LT++  +++ + Q RG+++DL  +P  D  T+ LL+   TLG+FQL+   MR  
Sbjct: 583 FLGLRNLTVIGDAIENIRQNRGIELDLETVPLTDPATFALLSRGETLGVFQLDGGPMRDL 642

Query: 632 LEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ET 685
           L  M+P    DI+A++SLYRPGP  ++    Y +RKNG+++I  IHP ++  LK    ET
Sbjct: 643 LRRMRPTGFGDIVAVLSLYRPGPMGVNAHNDYADRKNGRQQIKPIHPELEEPLKEILAET 702

Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
            G+I+YQEQ+M IAQ ++ YS+ +AD LR+AMGKK  E +  + E F +G   NG S+  
Sbjct: 703 YGLIVYQEQIMFIAQKVASYSMGKADALRKAMGKKKLEVLQAEYEGFAAGMLGNGFSEAA 762

Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
              +++ +  FADY FNKSHAA Y +++Y TA++K +YP E++AA +T   D+ +K   +
Sbjct: 763 IKALWDTVLPFADYAFNKSHAACYGLVAYWTAYLKANYPAEYMAALLTSVGDDKDKAAVY 822

Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDS 864
             D R+  I ++ P VN   VDF      I + L+A++ VG      I+    A+  F S
Sbjct: 823 LADCRKMGITVLAPDVNKSRVDFAAVGEDILFGLSAVRNVGVGLVESIIRTREAEGAFTS 882

Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRT 920
             D+ ++ D    N++ +ESL+ AG  D  G+ R  L     +++D +    +   + + 
Sbjct: 883 FSDYLAKADIAACNKKAVESLIKAGGFDALGHPRKGLYLVHAEAVDAVMGTKKAEAQGQY 942

Query: 921 NKHENIFAHEKG------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
           +   + F  E G      TF  +I  E++ ++    +   E+ +LG Y SGHPL
Sbjct: 943 DLFSDFF--ESGSPELASTFETQIPDEEWDMKQ---KLALEREMLGLYVSGHPL 991


>gi|325674398|ref|ZP_08154086.1| DNA-directed DNA polymerase III alpha subunit [Rhodococcus equi ATCC
            33707]
 gi|325554658|gb|EGD24332.1| DNA-directed DNA polymerase III alpha subunit [Rhodococcus equi ATCC
            33707]
          Length = 1178

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 349/1074 (32%), Positives = 568/1074 (52%), Gaps = 71/1074 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  +  +  +       A+ +TD  N++ A EF   A   GI+P
Sbjct: 4    SFVHLHNHTEYSMLDGAAKVGPLFKEAERLGMTAVGMTDHGNMYGASEFYNSAKKHGIKP 63

Query: 70   IIGCQLDIDMQD--NLKMTNQGKTPFPTVPS-----------IVLLVSTAEGYQRLIELV 116
            IIG +  +  +   N K    G    P+  S           + ++   + G + L +L 
Sbjct: 64   IIGIEAYVAPESRFNTKRVLWGD---PSQKSDDVSGSGAYTHMTMVAENSTGLRNLFKLS 120

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S   +  Q  +  R+    L     EG+I  TG  SG I         + A +    +++
Sbjct: 121  SLASIEGQLGKWPRMDEE-LIATHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQE 179

Query: 177  LFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            ++G D  ++ L  H    +R     ++ +     +P +ATN+  +++++  E H+ L+ +
Sbjct: 180  IWGKDNFFLELMDHGLSIERRVREGLLSIGRQLGIPPLATNDCHYVTKDAAENHEALLCI 239

Query: 235  AHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQV--HAP 290
                 +S   R +   D +YLK+  EM +I+ S++P A +N+V I  R      V  H  
Sbjct: 240  QTGKTLSDPTRFKFDGDGYYLKSAEEMRAIWDSEVPGACDNSVLIGERVQPYEDVWQHRD 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             +P F   E +     + + L  + + GL+ R   G        ++Y +R ++E+ VI +
Sbjct: 300  RMPIFPVPEGE----TQASWLHKEVMRGLDRRFPAGP------PREYIERAEYEIGVINQ 349

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F  YFL+V D I  A++  I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP
Sbjct: 350  MGFPAYFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNP 409

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468
            +R+SMPD DIDF   RR E++RY  +K+G ++VAQ+ITFG+++ KAA++D  R    Q  
Sbjct: 410  ERVSMPDIDIDFDDRRRGEMVRYATDKWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPG 469

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIAD--DSRFREARL------ADPSVDRLLEISQKLE 519
            ++  D++ K +P    A  +S+  I D    R++EA        ++P V ++ + ++ LE
Sbjct: 470  FAIADQITKALPPPIMAKDISVSGITDPEHERYKEAVEVRALIDSNPDVAKIYQTAKGLE 529

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R+A  HA  +++   PL+  +P+++  +    +T ++    E  GL+K DFLGL+ L
Sbjct: 530  GLIRNAGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNL 589

Query: 580  TLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +++ + A RGV +DL  +P +D  TY LL    TLG+FQL+ S MR  L  MQP 
Sbjct: 590  TVIGDAIENIKANRGVDIDLDTLPLEDPATYELLARGDTLGVFQLDGSAMRDLLRRMQPT 649

Query: 639  CIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI+A+++LYRPGP+       Y +RKNG++ +  IHP ++  LKE    T G+I+YQ
Sbjct: 650  GFEDIVAVLALYRPGPMGMNAHNDYADRKNGRQDVKPIHPELEEPLKEILADTFGLIVYQ 709

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQ+MQIAQ ++GYSL +AD+LRRAMGKK KE +D+  + F  G   NG S+     +++ 
Sbjct: 710  EQIMQIAQKVAGYSLGQADLLRRAMGKKKKEILDEAYDGFAEGMKANGFSQAAITALWDT 769

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA Y FNKSHAA Y ++S+ TA++K +YP E++A  +T   D+ +K   +  D R+ 
Sbjct: 770  VLPFAGYAFNKSHAAGYGLVSFWTAYLKANYPSEYMAGLLTSVGDDKDKAAVYLSDCRKM 829

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSR 871
             I ++PP VN   VDF      I + L A++ VG      I+ A  +K  F    D+ ++
Sbjct: 830  GITVLPPDVNASRVDFASVGEDIRFGLGAVRNVGANVVGSIIAAREEKGSFTDFSDYLNK 889

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            +D+   +++V ESL+ AG  D  G+ R  L+    +        +K       ++F    
Sbjct: 890  IDALACSKKVTESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAMGQFDLFG--- 946

Query: 932  GTFSDKITLEKFSVE------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            G  +D+     F+V+      +S  +   E+ +LG Y SGHPL+  + +L        + 
Sbjct: 947  GDDADESITSVFNVKVPDEEWDSKHKLALEREMLGLYVSGHPLNGVEHVLAAQS----DT 1002

Query: 986  SVATI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            S+  I       G  + +  ++ S  ++  + G         + +   E  FFP
Sbjct: 1003 SIPVILEGDIKDGTQVTVGGILASVNRRINKNGLTWASAQLEDLSGGIEVLFFP 1056


>gi|312140121|ref|YP_004007457.1| DNA polymerase iii alpha subunit dnae1 [Rhodococcus equi 103S]
 gi|311889460|emb|CBH48777.1| DNA polymerase III alpha subunit DnaE1 [Rhodococcus equi 103S]
          Length = 1178

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 349/1074 (32%), Positives = 568/1074 (52%), Gaps = 71/1074 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  +  +  +       A+ +TD  N++ A EF   A   GI+P
Sbjct: 4    SFVHLHNHTEYSMLDGAAKVGPLFKEAERLGMTAVGMTDHGNMYGASEFYNSAKKHGIKP 63

Query: 70   IIGCQLDIDMQD--NLKMTNQGKTPFPTVPS-----------IVLLVSTAEGYQRLIELV 116
            IIG +  +  +   N K    G    P+  S           + ++   + G + L +L 
Sbjct: 64   IIGIEAYVAPESRFNTKRVLWGD---PSQKSDDVSGSGAYTHMTMVAENSTGLRNLFKLS 120

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S   +  Q  +  R+    L     EG+I  TG  SG I         + A +    +++
Sbjct: 121  SLASIEGQLGKWPRMDEE-LIATHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQE 179

Query: 177  LFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            ++G D  ++ L  H    +R     ++ +     +P +ATN+  +++++  E H+ L+ +
Sbjct: 180  IWGKDNFFLELMDHGLSIERRVREGLLSIGRQLGIPPLATNDCHYVTKDAAENHEALLCI 239

Query: 235  AHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQV--HAP 290
                 +S   R +   D +YLK+  EM +I+ S++P A +N+V I  R      V  H  
Sbjct: 240  QTGKTLSDPTRFKFDGDGYYLKSAEEMRAIWDSEVPGACDNSVLIGERVQPYEDVWQHRD 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             +P F   E +     + + L  + + GL+ R   G        ++Y +R ++E+ VI +
Sbjct: 300  RMPIFPVPEGE----TQASWLHKEVMRGLDRRFPAGP------PREYIERAEYEIGVINQ 349

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F  YFL+V D I  A++  I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP
Sbjct: 350  MGFPAYFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNP 409

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468
            +R+SMPD DIDF   RR E++RY  +K+G ++VAQ+ITFG+++ KAA++D  R    Q  
Sbjct: 410  ERVSMPDIDIDFDDRRRGEMVRYATDKWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPG 469

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIAD--DSRFREARL------ADPSVDRLLEISQKLE 519
            ++  D++ K +P    A  +S+  I D    R++EA        ++P V ++ + ++ LE
Sbjct: 470  FAIADQITKALPPPIMAKDISVSGITDPEHERYKEAVEVRALIDSNPDVAKIYQTAKGLE 529

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R+A  HA  +++   PL+  +P+++  +    +T ++    E  GL+K DFLGL+ L
Sbjct: 530  GLIRNAGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNL 589

Query: 580  TLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +++ + A RGV +DL  +P +D  TY LL    TLG+FQL+ S MR  L  MQP 
Sbjct: 590  TVIGDAIENIKANRGVDIDLDTLPLEDPATYELLARGDTLGVFQLDGSAMRDLLRRMQPT 649

Query: 639  CIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI+A+++LYRPGP+       Y +RKNG++ +  IHP ++  LKE    T G+I+YQ
Sbjct: 650  GFEDIVAVLALYRPGPMGMNAHNDYADRKNGRQDVKPIHPELEEPLKEILADTFGLIVYQ 709

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQ+MQIAQ ++GYSL +AD+LRRAMGKK KE +D+  + F  G   NG S+     +++ 
Sbjct: 710  EQIMQIAQKVAGYSLGQADLLRRAMGKKKKEILDEAYDGFAEGMKANGFSQAAITALWDT 769

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA Y FNKSHAA Y ++S+ TA++K +YP E++A  +T   D+ +K   +  D R+ 
Sbjct: 770  VLPFAGYAFNKSHAAGYGLVSFWTAYLKANYPSEYMAGLLTSVGDDKDKAAVYLSDCRKM 829

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSR 871
             I ++PP VN   VDF      I + L A++ VG      I+ A  +K  F    D+ ++
Sbjct: 830  GITVLPPDVNASRVDFASVGEDIRFGLGAVRNVGANVVGSIIAAREEKGSFTDFSDYLNK 889

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            +D+   +++V ESL+ AG  D  G+ R  L+    +        +K       ++F    
Sbjct: 890  IDALACSKKVTESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAMGQFDLFG--- 946

Query: 932  GTFSDKITLEKFSVE------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            G  +D+     F+V+      +S  +   E+ +LG Y SGHPL+  + +L        + 
Sbjct: 947  GDDADESITSVFNVKVPDEEWDSKHKLALEREMLGLYVSGHPLNGVEHVLAAQS----DT 1002

Query: 986  SVATI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            S+  I       G  + +  ++ S  ++  + G         + +   E  FFP
Sbjct: 1003 SIPVILEGDIKDGTQVTVGGILASVNRRINKNGLTWASAQLEDLSGGIEVLFFP 1056


>gi|260662144|ref|ZP_05863040.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            fermentum 28-3-CHN]
 gi|260553527|gb|EEX26419.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            fermentum 28-3-CHN]
          Length = 1099

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 358/1044 (34%), Positives = 536/1044 (51%), Gaps = 95/1044 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L V S YSLLE  +    ++         A+ + D   L+ A+ F ++A  AG+ P
Sbjct: 2    GFVPLAVKSMYSLLEAPVRPAELVAVAKERGYQAVGLVDARVLYGAVNFVRRANQAGLHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG  L +   +                 + LL   A GYQ L  L +R  + D+  Q +
Sbjct: 62   VIGVSLPLTFAEG-------------TLDVTLLAKGAVGYQNLTRLSTRA-MTDRANQPL 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
             I    L+E+  + ++++         +      S+       T+ +L    D L +NL 
Sbjct: 108  TI--EDLREVSDDLVVIVA-------PQLMLLGVSEQ------TYAQLGEVADYLGINLD 152

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRP 246
                +       +  +A    LPL+A     +L+E+DY A  VL A+ A  T+       
Sbjct: 153  ----FTAAERQDLQAVAERCGLPLIALEPVEYLNEDDYFATQVLRAIKAGHTIEDPLKAS 208

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALE--NTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            + T  H+L+   E+ + +     A     TV +A RC        P+LP F       + 
Sbjct: 209  QRTGRHWLRPAEEVAAAYRAAGLAEAAAQTVAVAERCQVHFADQTPVLPAFPTPAGQGV- 267

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR     GL  R   G  A      +Y+ RL+ EL VI +M F  YFLIV D +
Sbjct: 268  ---ADYLRELCQRGLAKRKLAGDPA------EYQARLEHELTVIHQMGFDNYFLIVWDLM 318

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A ++ I  GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLNP+R  MPD D+D   
Sbjct: 319  NFAHQHQILTGPGRGSAAGSLVAYALAITDVDPLQYGLLFERFLNPERAQMPDIDLDLPD 378

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI----- 479
            +RR+EV+ Y+ + YGHERVAQIITFGSL  K  LRDV R   +P  QV+ L ++I     
Sbjct: 379  NRREEVLNYLHHHYGHERVAQIITFGSLGTKQVLRDVSRVFNLPKYQVESLSQVIDRVKG 438

Query: 480  PN-------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            P+       + A PV  Q +A DS+          V  LLE++ KLEGL RH S HAAG+
Sbjct: 439  PHQTLADLLESAQPV--QNLARDSKL---------VACLLEVAAKLEGLPRHDSIHAAGV 487

Query: 533  VIGDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            V+   PL + VP+   +    + VTQF    +E  GL+K D LGL+ LT ++ +L+ + Q
Sbjct: 488  VLAAEPLIKTVPLQAGNEPGAMLVTQFEKDTVESLGLLKIDLLGLRNLTTVETALNLIHQ 547

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                 DL+ I  +D  T  L     T GIFQ ESSG+RQ L  + PD  E+I+A+ +LYR
Sbjct: 548  HQPDFDLTHIALNDRPTLALFDRGQTSGIFQFESSGIRQTLVNLHPDNFEEIVAVNALYR 607

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+DNI  +  RK G+E +      + P+L  T G+++YQEQVMQ+A ++ G+SL EAD
Sbjct: 608  PGPMDNINHFIARKKGQEAVNLPAKELAPILAPTYGILVYQEQVMQVAAVMGGFSLGEAD 667

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAM KK    M   KE F++GA+K G    +A  +F  + +FA+YGFN+SHA AY+ 
Sbjct: 668  LLRRAMSKKKLATMASMKEAFLAGANKRGYPNAVAEQVFAYIDQFANYGFNRSHAVAYSK 727

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++++ A++K H+P EFLAA M  + D   K+  +  +A+Q  I    P++N       + 
Sbjct: 728  MAFEMAYLKVHFPAEFLAALMETDPDT-SKVWAYFSEAKQLGITTHGPAINQSQERVSLV 786

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            D  ++  L  IKG+     R I+E  +   P+  L D  +R+D+K     +   L+ AGA
Sbjct: 787  DQELWLGLDMIKGLRRDFIRAIIEERNQHGPYQDLPDLVNRLDAKWHKEALFVPLIDAGA 846

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            LD  GY+R ++ + L  I + A++                 G     +  ++      +V
Sbjct: 847  LDHLGYNRAEMAEGLKAILEGAEYA--------------GLGLGMAPVVAQRNEYP-LAV 891

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKT 1009
            R   E  VLG Y SGHP+  Y+ +  K+ +     +VA +R N  +RL  MV   ++  T
Sbjct: 892  RLAREHAVLGTYLSGHPVSQYQDLRTKLKLP----TVAQLRPNQRVRLVLMVTRMRKVTT 947

Query: 1010 RKGSR-IGWVTFSEPAKEYEANFF 1032
            ++  + + ++T S+     E   F
Sbjct: 948  KREHKPMAFLTASDETGAVEVTIF 971


>gi|183982382|ref|YP_001850673.1| DNA polymerase III, alpha subunit, DnaE1 [Mycobacterium marinum M]
 gi|183175708|gb|ACC40818.1| DNA polymerase III, alpha subunit, DnaE1 [Mycobacterium marinum M]
          Length = 1180

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 340/1003 (33%), Positives = 537/1003 (53%), Gaps = 57/1003 (5%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S SFVHL  H+ YS+L+GA  +  +L ++     PAI +TD  N+F A EF   A  AG+
Sbjct: 6   SRSFVHLHNHTEYSMLDGAAKITPMLAEVERLDMPAIGMTDHGNMFGASEFYNSATKAGV 65

Query: 68  QPIIGCQLDIDMQ---DNLKMT-------NQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
           +PIIG +  +      D  ++T           +   +   + ++   A G + L +L S
Sbjct: 66  KPIIGVEAYVAPGSRFDTRRITWGDPSQKGDDVSGSGSYTHLTMVAENATGLRNLFKLSS 125

Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
                 Q  +  R+    + E   EG+I  TG  SG +         + A +    ++++
Sbjct: 126 LASFEGQLGKWSRMDAELVAE-HAEGIIATTGCPSGEVQTRLRLGHDREALESAAKWREI 184

Query: 178 FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           FG D  ++ L  H    +R     ++++    ++P +ATN+  +++ +    H+ L+ V 
Sbjct: 185 FGADNYFLELMDHGLSIERRVREGLIEIGRKLDIPPLATNDCHYVTRDAAHNHEALLCVQ 244

Query: 236 HSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPI-- 291
               +S  +R +   D +YLK+ +EM  ++ D +P A ++T+ IA R      V  P   
Sbjct: 245 TGKTLSDPNRFKFDGDGYYLKSAAEMRQLWDDDIPGACDSTLLIAERVQSYADVWTPRDR 304

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
           +P F   E  D      + L ++ +AGL  R   G        QDY  R ++E+ VI   
Sbjct: 305 MPIFPVPEGHD----PASWLHHEVMAGLRRRFPSGL------GQDYIDRAEYEIKVICDK 354

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            F  YFLIVAD I +A+  +I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+
Sbjct: 355 GFPSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPE 414

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPY 469
           R S PD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAAL+D  R    Q  +
Sbjct: 415 RPSAPDIDIDFDDRRRGEMVRYAADKWGQDRVAQVITFGTIKTKAALKDSARIHYGQPGF 474

Query: 470 SQVDRLCKLIPND-PAHPVSLQAIADDS--RFREAR------LADPSVDRLLEISQKLEG 520
           +  DR+ K +P    A  + L  I D +  RF+EA         DP V  + + ++ LEG
Sbjct: 475 AIADRITKALPPPIMAKDIPLSGITDPAHERFKEAAEVRGLIETDPDVRTIYQTARGLEG 534

Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
           L R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ LT
Sbjct: 535 LIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLT 594

Query: 581 LLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
           ++  +++ + A RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP  
Sbjct: 595 IIGDAIENIKANRGIDLDLESLPLDDKPTYELLGRGETLGVFQLDGGPMRDLLRRMQPTE 654

Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQE 693
             DI+A+++LYRPGP+       Y +RKN ++ +  IHP L +P+   L ET G+I+YQE
Sbjct: 655 FNDIVAVLALYRPGPMGMNAHNDYADRKNNRQAVKPIHPELEEPLREILSETYGLIVYQE 714

Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
           Q+M IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++ +
Sbjct: 715 QIMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTI 774

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  
Sbjct: 775 LPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLG 834

Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV 872
           I ++PP VN   V+F      I + L A++ VG      ++   + K  F    D+ +++
Sbjct: 835 ITVLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIGTRSGKGKFTDFSDYLNKI 894

Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
           D    N++V ESL+ AGA D  G+ R  L     +        +K       ++F     
Sbjct: 895 DISACNKKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGG--- 951

Query: 933 TFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLD 969
             SD      F+++     +E+      E+ +LG Y SGHPL+
Sbjct: 952 --SDSGADAVFTIKVPEDEWEDKHKLALEREMLGLYVSGHPLN 992


>gi|118617195|ref|YP_905527.1| DNA polymerase III subunit alpha [Mycobacterium ulcerans Agy99]
 gi|118569305|gb|ABL04056.1| DNA polymerase III, alpha subunit, DnaE1 [Mycobacterium ulcerans
           Agy99]
          Length = 1180

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 340/1003 (33%), Positives = 537/1003 (53%), Gaps = 57/1003 (5%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S SFVHL  H+ YS+L+GA  +  +L ++     PAI +TD  N+F A EF   A  AG+
Sbjct: 6   SRSFVHLHNHTEYSMLDGAAKITPMLAEVERLDMPAIGMTDHGNMFGASEFYNSATKAGV 65

Query: 68  QPIIGCQLDIDMQ---DNLKMT-------NQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
           +PIIG +  +      D  ++T           +   +   + ++   A G + L +L S
Sbjct: 66  KPIIGVEAYVAPGSRFDTRRITWGDPSQKGDDVSGSGSYTHLTMVAENATGLRNLFKLSS 125

Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
                 Q  +  R+    + E   EG+I  TG  SG +         + A +    ++++
Sbjct: 126 LASFEGQLGKWSRMDAELVAE-HAEGIIATTGCPSGEVQTRLRLGHDREALESAAKWREI 184

Query: 178 FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           FG D  ++ L  H    +R     ++++    ++P +ATN+  +++ +    H+ L+ V 
Sbjct: 185 FGADNYFLELMDHGLSIERRVREGLIEIGRKLDIPPLATNDCHYVTRDAAHNHEALLCVQ 244

Query: 236 HSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPI-- 291
               +S  +R +   D +YLK+ +EM  ++ D +P A ++T+ IA R      V  P   
Sbjct: 245 TGKTLSDPNRFKFDGDGYYLKSAAEMRQLWDDDIPGACDSTLLIAERVQSYADVWTPRDR 304

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
           +P F   E  D      + L ++ +AGL  R   G        QDY  R ++E+ VI   
Sbjct: 305 MPIFPVPEGHD----PASWLHHEVMAGLRRRFPSGL------GQDYIDRAEYEIKVICDK 354

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            F  YFLIVAD I +A+  +I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+
Sbjct: 355 GFPSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPE 414

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPY 469
           R S PD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAAL+D  R    Q  +
Sbjct: 415 RPSAPDIDIDFDDRRRGEMVRYAADKWGQDRVAQVITFGTIKTKAALKDSARIHYGQPGF 474

Query: 470 SQVDRLCKLIPND-PAHPVSLQAIADDS--RFREAR------LADPSVDRLLEISQKLEG 520
           +  DR+ K +P    A  + L  I D +  RF+EA         DP V  + + ++ LEG
Sbjct: 475 AIADRITKALPPPIMAKDIPLSGITDPAHERFKEAAEVRGLIETDPDVRTIYQTARGLEG 534

Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
           L R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ LT
Sbjct: 535 LIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLT 594

Query: 581 LLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
           ++  +++ + A RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP  
Sbjct: 595 IIGDAIENIEANRGIDLDLESLPLDDKPTYELLGRGETLGVFQLDGGPMRDLLRRMQPTE 654

Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQE 693
             DI+A+++LYRPGP+       Y +RKN ++ +  IHP L +P+   L ET G+I+YQE
Sbjct: 655 FNDIVAVLALYRPGPMGMNAHNDYADRKNNRQAVKPIHPELEEPLREILSETYGLIVYQE 714

Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
           Q+M IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++ +
Sbjct: 715 QIMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTI 774

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  
Sbjct: 775 LPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLG 834

Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV 872
           I ++PP VN   V+F      I + L A++ VG      ++   + K  F    D+ +++
Sbjct: 835 ITVLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIGTRSGKGKFTDFSDYLNKI 894

Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
           D    N++V ESL+ AGA D  G+ R  L     +        +K       ++F     
Sbjct: 895 DISACNKKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGG--- 951

Query: 933 TFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLD 969
             SD      F+++     +E+      E+ +LG Y SGHPL+
Sbjct: 952 --SDSGADAVFTIKVPEDEWEDKHKLALEREMLGLYVSGHPLN 992


>gi|218283532|ref|ZP_03489522.1| hypothetical protein EUBIFOR_02112 [Eubacterium biforme DSM 3989]
 gi|218215800|gb|EEC89338.1| hypothetical protein EUBIFOR_02112 [Eubacterium biforme DSM 3989]
          Length = 989

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 355/1005 (35%), Positives = 538/1005 (53%), Gaps = 81/1005 (8%)

Query: 44   IAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
            + +TD N ++  +EF Q      +  IIG ++D         +   + PF      +LL 
Sbjct: 13   VCLTDHNVMYGTMEFYQLCKKHNVHAIIGLEVD---------SIYNEEPF----HFILLA 59

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFN 162
                G Q L +L S +      K++V    S+ + I   +  ++LT  SS   D    + 
Sbjct: 60   KNDMGLQNLYKLSSII------KENV----SFDEVIKYAKDCVVLT--SSDGKDTFSAYI 107

Query: 163  SSQVAEKRLLTFKKL----FGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNS 217
              Q  EK L  F +L    F D  YV++  +  G  R     + QL    +   VA +  
Sbjct: 108  EHQDLEK-LSAFVELCKNSFSD-FYVSISMNDSGKKRVDNKILKQL----DCKCVALSRI 161

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            L+   ED ++   L A+A  T +  +    V    YL++  EM +++ +    L  T +I
Sbjct: 162  LYEKSEDVKSLQALRAIAKQTSIENQGLD-VQFQRYLRSPQEMEALYDECD--LLATEQI 218

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
            AR C+  +      LP F  K    +  +  + L      GLE RL       G     Y
Sbjct: 219  ARMCNVQMAFQKSKLPVFENK----LHIDSSDYLVKLCKKGLEKRL------NGNLDAVY 268

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
              RL++EL+VI  M F+ YFLIV DFI++A+  +I VGPGRGS AGS+ AY L IT IDP
Sbjct: 269  MNRLEYELSVIINMGFTDYFLIVWDFIRYARSKDIFVGPGRGSAAGSLVAYCLGITHIDP 328

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
            ++ +LLFERFLNP R+SMPD D DF  DRRDEVIRYV+  YG + V+ I+TF +LQA+ A
Sbjct: 329  IQNNLLFERFLNPSRISMPDIDTDFPDDRRDEVIRYVRKLYGQDHVSHIVTFNTLQARQA 388

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
            +RDVGR + +P   VD L K++ N P   + +QA  D++ FR+   +D  +  L ++   
Sbjct: 389  IRDVGRVMNIPARIVDELSKMLKNTPKITL-MQAYNDNALFRKRIQSDQKLIELFQMCVS 447

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EGL RH S HAAGIV+ D+P+  + P+   V  D+  TQF  +++E  GLIK DFLG++
Sbjct: 448  IEGLPRHTSLHAAGIVLSDQPIVNVCPLV-SVDGDIQATQFTAEYLEDLGLIKMDFLGIR 506

Query: 578  TLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT + + +  L  Q+ + +D+  I   D +TY LL+   TLG+FQLESSG+   L+ +Q
Sbjct: 507  NLTTIHEIVTNLKEQKHISLDMMKINLKDAKTYQLLSLGNTLGVFQLESSGITTLLQKIQ 566

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            P+ IEDI  +++LYRPG + +I  Y  RK    K+V  HPL++P+LKET G++IYQEQVM
Sbjct: 567  PNKIEDISVVLALYRPGAMQHIDTYIERKKDPSKVVYPHPLLEPILKETYGIMIYQEQVM 626

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            Q AQ++ G+SL++AD LR+AM KK  + M   KE+FI GA KN I  +++  IF ++ +F
Sbjct: 627  QTAQVIGGFSLAQADTLRKAMSKKKLDVMQNLKEQFILGARKNRIKDSVSNEIFSIMEQF 686

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A YGFNKSH+ AY++++YQ A++K +YP+ F  + +   + +  K  ++  + ++ NI +
Sbjct: 687  AGYGFNKSHSYAYSLVAYQMAYLKANYPLYFYQSLLNSVIGSGIKTSQYIYECKRRNIVV 746

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
                +N     + +  N I   L  +KGVG T    I+E     P+  L DF ++    K
Sbjct: 747  NGCDINHSKAFYTIEQNSIRMPLQVLKGVGKTIYPTIIEHV---PYTDLFDFLAKASMYK 803

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            +N   +  L+  GALDCFGY+R  L ++L  +  Y   V     N     F+        
Sbjct: 804  INESTIRILIDGGALDCFGYNRATLNENLRKLMDYVNIVRIEDPNDLRFDFSIVSRPGIQ 863

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK--------PILRKMGIKGYEESVA 988
            +I       EN   + + EQ V GFY S HP+   +        P+L  +   GY     
Sbjct: 864  RIK------ENPIQKAQKEQYVYGFYVSEHPVQSLRMHKYPNCIPLLNAVNRDGY----- 912

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  + +   V S +  KT+KG  + +++  + A + +A   P
Sbjct: 913  ------MNILVRVASFRTHKTKKGDWMCFMSVEDEAGKMDAVIMP 951


>gi|54023768|ref|YP_118010.1| DNA polymerase III subunit alpha [Nocardia farcinica IFM 10152]
 gi|54015276|dbj|BAD56646.1| putative DNA polymerase III alpha subunit [Nocardia farcinica IFM
            10152]
          Length = 1196

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 340/1009 (33%), Positives = 544/1009 (53%), Gaps = 55/1009 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL  H+ YS+L+GA  ++ +  +       A+ +TD  N++ A EF   A   G+
Sbjct: 19   SGSFVHLHNHTEYSMLDGAAKISPLFTEAKRLGMTAVGMTDHGNMYGASEFYNSAKKHGL 78

Query: 68   QPIIGCQLDIDMQDN-----LKMTNQGKTPFPTVPS-----IVLLVSTAEGYQRLIELVS 117
            +PIIG +  I          ++  + G+       S     + ++   A G + L +L S
Sbjct: 79   KPIIGIEAYIAPGSRFDTKRVQWGDPGQKGDDVSGSGAYTHMTMVAENATGLRNLFKLSS 138

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +  Q  +  R+    + +   EG+I  TG  SG +         + A +    ++++
Sbjct: 139  LASIEGQLGKWARMDAEIIAQ-HAEGIIATTGCPSGEVQTRLRLGHEREALEAAAKWQEI 197

Query: 178  FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG D  ++ +  H    +R     ++ +     +P +ATN+  ++ E D   H+ L+ V 
Sbjct: 198  FGPDNFFLEVMDHGLSIERRVREGLLDIGRKLGIPPLATNDCHYVYESDAANHEALLCVQ 257

Query: 236  HSTVVSQKDRPRV-TPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQV--HAPI 291
                +S   R +     +YLK+  EM +I+ +++P A +NT+ I  R      V  H   
Sbjct: 258  TGKTLSDPTRFKFDGSGYYLKSGDEMRAIWDAEVPGACDNTLLIGERVQSYDAVWEHRDR 317

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +P F   E +     + + L  + + GLE R   G        ++Y +R ++EL+VI  M
Sbjct: 318  MPIFPVPEGE----TQASWLHKEVMRGLERRFPNGV------PEEYLRRAEYELDVICEM 367

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFL+V D I  A++  I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+
Sbjct: 368  GFPAYFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPE 427

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPY 469
            R+SMPD DIDF   RR E++RY   K+G +RVAQ+ITFG+++ KAA++D  R    Q  +
Sbjct: 428  RVSMPDIDIDFDDRRRGEMVRYATEKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGF 487

Query: 470  SQVDRLCKLIPND-PAHPVSLQAIAD--DSRFREAR------LADPSVDRLLEISQKLEG 520
            +  D++ K +P    A  + L  I D    R++EA         +P V ++ E ++ LEG
Sbjct: 488  AIADQISKALPPPIMAKDIPLSGIMDPEHERYKEAAEVRELIANNPDVAKIYETARGLEG 547

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R+A  HA  +++   PL   +P+++  +    +T ++    E  GL+K DFLGL+ LT
Sbjct: 548  LIRNAGVHACAVIMSSEPLMDAIPLWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLT 607

Query: 581  LLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  +LD + A RG+ +D+  +P DD  TY LL+   TLG+FQL+ S MR  L  MQP  
Sbjct: 608  VIGDALDNIKANRGIDLDMDNLPLDDPATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTG 667

Query: 640  IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQE 693
             EDI+A+++LYRPGP+       Y +RKNG++++  IHP ++  LK    +T G+I+YQE
Sbjct: 668  FEDIVAVLALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKDILADTYGLIVYQE 727

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            Q+MQIAQ ++GYSL  AD+LRRAMGKK  E ++ + E F +G  +NG SK     +++ +
Sbjct: 728  QIMQIAQKVAGYSLGRADILRRAMGKKKAEVLEAEFEGFEAGMLENGFSKPAIKALWDTI 787

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNKSHAA Y ++S+ TA++K +YP E++A  +T   D+ +K   +  D R+  
Sbjct: 788  LPFAGYAFNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLSDCRRLG 847

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRV 872
            I ++PP VN    +F      I + L A++ VG      I++A  +K  F    D+ +++
Sbjct: 848  ITVLPPDVNESEQNFASVGKDIRFGLGAVRNVGANVVASIIQARKEKSKFTDFSDYLNKI 907

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D+    ++V ESL+ AGA D  G+ R  L+    +        +K       ++F    G
Sbjct: 908  DAIACTKKVTESLIKAGAFDSLGHPRKGLMLIHSDAIDAVMATKKAEAIGQFDLFG---G 964

Query: 933  TFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPIL 975
              +D+     F+V+     +E       E+ +LG Y SGHPL+  + +L
Sbjct: 965  MDADESVTSVFNVKVPDEEWETKHKLALEREMLGLYVSGHPLNGVEHVL 1013


>gi|307128611|ref|YP_003880641.1| DNA polymerase III subunit alpha [Candidatus Sulcia muelleri CARI]
 gi|306483073|gb|ADM89943.1| DNA polymerase III, alpha subunit [Candidatus Sulcia muelleri CARI]
          Length = 1379

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 332/1010 (32%), Positives = 540/1010 (53%), Gaps = 75/1010 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            F H+  H+S+S+L   + +N+++ K       A+ ITD  N+     F +K         
Sbjct: 211  FSHIHNHTSFSILSSTIDINSLIKKTIEYNMDAVGITDYGNMMGVFNFIKKIKNLNDNNN 270

Query: 67   -IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
             I+PIIGC+L I     +K   + + P   +   V       GY  L +L S  ++    
Sbjct: 271  KIKPIIGCELFISYNYLIKKFTK-QNP-DKIYHQVFFAKNKNGYNNLSKLCSHGFIDGYY 328

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                RI  + +++   E LI ++G  +  I           AEK    +  LFGD  Y+ 
Sbjct: 329  SGIPRIGKNLIEKY-KENLIAISGDLNSEIPFTILNKGENEAEKVFKWWHNLFGDDFYIE 387

Query: 186  LQRHRGYDRYRESQVVQLAYT--HELPLVATNNSLFLSEEDYEAHDVLMAVAHS----TV 239
            + RH G +       + L ++  + +  +A NN+ +LS++DY AHD+L+ V +S    T 
Sbjct: 388  ILRH-GLEEEDHVNKILLKFSKKYNVKFIAQNNNFYLSQKDYNAHDILLCVKNSQKQSTP 446

Query: 240  VSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
            + +    R      + Y KN+ +M ++FSDLPEA +N  E+  +  F    +  +LP+F 
Sbjct: 447  IGKGKGFRFGFPNKEFYFKNKFQMYNLFSDLPEAFDNLKELIEKVEFYDISNQILLPKF- 505

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQD-YRQRLDFELNVIARMKF 353
                 +I  +   +  NK      +R    +GA  K     D  +++++FEL  I ++ +
Sbjct: 506  -----NIPNKWIKKNCNKNNENEYLRFLTYKGAKKKYIDLNDRIKKKIEFELETIKKIGY 560

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFLIV D I  AK   I VGPGRGS AGSV AY L IT+IDP++++LLFERFLNPDR+
Sbjct: 561  PGYFLIVQDLIFKAKNIGIEVGPGRGSVAGSVVAYCLGITNIDPIKYNLLFERFLNPDRV 620

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            S+PD DIDF    R+++I +V NKYG  +VAQIIT+G + AK+++RD  R L +   + +
Sbjct: 621  SLPDIDIDFDDKGREKIIEWVVNKYGKNKVAQIITYGKMGAKSSIRDTARVLNLTLLETN 680

Query: 474  RLCKLIPN-DPAHPVSLQAIADDSRFREARLADPSV------------DRLLEISQKLEG 520
            ++ K++PN      +  +  +         L +                ++L+ +  +EG
Sbjct: 681  KIAKIVPNLSLKEIIKKKIKSLKEILNNEELENVIKLKKIFKKKNTLQSKILKQAMVIEG 740

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              R+   HA GI+I    +   +P+     S+  +TQF+   +EK GL+K DFLGLKTLT
Sbjct: 741  SVRNTGIHACGIIITPSDIKDYIPVSTTKDSNFLLTQFDNDVVEKVGLLKMDFLGLKTLT 800

Query: 581  LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +++++L  ++     + L  IP DD +TY L     T+ +FQ ES GM++ L  ++PD  
Sbjct: 801  IIKETLYLISN----LKLENIPLDDVKTYELFKKGETVAVFQYESPGMQKYLIQLKPDKF 856

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             D+IA+ +LYRPGP+  I  +  RK+G EKI    P +   L+ET G+ +YQEQVM I+Q
Sbjct: 857  YDLIAMNALYRPGPMQYIPNFIARKHGLEKISYDLPELKEFLEETYGITVYQEQVMLISQ 916

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             +SG+S  +AD LR+A+GKK K+ + K K +FI G  KNG S  I   I++    FA Y 
Sbjct: 917  KISGFSKGDADFLRKAIGKKDKKILFKIKNKFIYGGLKNGFSIKILEKIWKDWKAFASYA 976

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSH+  Y+ I++QTA++KTHYP E++A+ ++  M  ++ +  F ++ ++  + ++ P 
Sbjct: 977  FNKSHSTCYSYIAFQTAYLKTHYPAEYMASVLSNNMQKIKNVTFFIEECKRIGVIVLGPD 1036

Query: 821  VNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +N     F V     I + L AIKG+G ++ + I++   ++ ++S+ +    VD + +N+
Sbjct: 1037 INESNYKFTVNKMGYIRFGLGAIKGIGESSVKSILKERKNR-YNSILELIKNVDLRLVNK 1095

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---------- 929
            +VLE+LV +GA D           +L+NI +Y  + E+N +N  E +             
Sbjct: 1096 KVLENLVLSGAFD-----------NLNNIHRYQYFYEENGSNMIEKMIKFGVKYKKLKKN 1144

Query: 930  -EKGTFSDKITLE----KFSV---ENSSVRFENEQRVLGFYFSGHPLDVY 971
             +   F +   +E    KF +    N+  +   E+ V+G Y + HPL+ Y
Sbjct: 1145 VKNTLFRNVKDIEILEPKFKICKEWNNFYKLNKEKEVIGMYMTSHPLNEY 1194


>gi|118469839|ref|YP_887493.1| DNA polymerase III subunit alpha [Mycobacterium smegmatis str. MC2
           155]
 gi|118171126|gb|ABK72022.1| DNA polymerase III alpha subunit [Mycobacterium smegmatis str. MC2
           155]
          Length = 1184

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 351/1006 (34%), Positives = 543/1006 (53%), Gaps = 61/1006 (6%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S SFVHL  H+ YS+L+GA  +  +L +    + PAI +TD  N+F A EF   A  AGI
Sbjct: 9   SGSFVHLHNHTEYSMLDGAAKITPMLAEAQRLEMPAIGMTDHGNMFGASEFYNSATKAGI 68

Query: 68  QPIIGCQLDIDMQ---DNLKMT--NQGKTPFPTVPS-----IVLLVSTAEGYQRLIELVS 117
           +PIIG +  I      D  ++T  + G+       S     + ++   A G + L +L S
Sbjct: 69  KPIIGIEAYIAPGSRFDTKRVTWGDPGQKGDDVSGSGAYTHMTMVAENATGLRNLFKLSS 128

Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
                 Q  +  R+    + E   EG+I  TG  SG +         + A +    ++++
Sbjct: 129 LASFEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHEREALEAAAKWREI 187

Query: 178 FG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           FG +  ++ L  H G D   R RE  ++++     +P +ATN+  +++ E    H+ L+ 
Sbjct: 188 FGPENFFLELMDH-GLDIERRVREG-LLEIGRKLGIPPLATNDCHYVTREAARNHEALLC 245

Query: 234 VAHSTVVSQKDRPRVTPDHY-LKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPI 291
           V     +S   R +   D Y LK+  EM +++ S +P A ++T+ I  R      V  P 
Sbjct: 246 VQTGKTLSDPTRFKFDGDGYFLKSAEEMRALWDSQVPGACDSTLLIGERVQSYADVWEPR 305

Query: 292 --LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
             +P F   E  D    + + L ++  AGLE R   G +      ++Y  R ++E+ VI 
Sbjct: 306 DRMPVFPVPEGHD----QASWLTHEVKAGLERRFRGGPVP-----EEYTTRAEYEIKVIC 356

Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
              F  YFLIVAD I +A+   I VGPGRGS AGS+ AYAL IT+IDP+   LLFERFLN
Sbjct: 357 DKGFPSYFLIVADLINYARSVGIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLN 416

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA--LQM 467
           P+R S PD DIDF   RR E++RY  N++G ERVAQ+ITFG+++ KAAL+D  R    Q 
Sbjct: 417 PERPSAPDIDIDFDDRRRGEMLRYAANRWGSERVAQVITFGTIKTKAALKDSARVNFGQP 476

Query: 468 PYSQVDRLCKLIPND-PAHPVSLQAIADDS--RFREARL------ADPSVDRLLEISQKL 518
            ++  DR+ K +P    A  + L  I D +  R++EA         DP V  + E ++ L
Sbjct: 477 GFAIADRITKALPPPIMAKDIPLSGITDPNHERYKEAAEVRGLIDTDPDVRTIYETARGL 536

Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
           EGL R+A  HA  +++   PL   +P+++  +    +T ++    E  GL+K DFLGL+ 
Sbjct: 537 EGLVRNAGVHACAVIMSSEPLIDAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRN 596

Query: 579 LTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
           LT++  ++ +  A RG+ +DL  +P DD   Y LL+   TLG+FQL+   MR  L  MQP
Sbjct: 597 LTIIGDAIANIKANRGIDLDLETLPLDDPAAYELLSRGDTLGVFQLDGGPMRDLLRRMQP 656

Query: 638 DCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIY 691
               DI+A+++LYRPGP+       Y +RKNG++ I  IHP ++  LK    ET G+I+Y
Sbjct: 657 TGFNDIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKDILAETYGLIVY 716

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QEQ+M IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++
Sbjct: 717 QEQIMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFKEGMTANGFSEGAVKALWD 776

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +  FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+
Sbjct: 777 TILPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRR 836

Query: 812 FNIQIMPPSVNTPCVDF-KVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFC 869
             I ++PP VN    +F  VGD+ I + L AI+ VG      +++   +K  F    D+ 
Sbjct: 837 LGITVLPPDVNESEHNFASVGDD-IRFGLGAIRNVGANVVSSLIKTRTEKGKFTDFSDYL 895

Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
           +++D    N++V ESL+ AGA D  G+ R  L     +        +K       ++F  
Sbjct: 896 NKIDITACNKKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGG 955

Query: 930 EKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLD 969
            + T +D +    F+++     +E+      E+ +LG Y SGHPL+
Sbjct: 956 GEDTGTDAV----FTIKVPDEEWEDKHKLALEREMLGLYVSGHPLN 997


>gi|139438972|ref|ZP_01772432.1| Hypothetical protein COLAER_01438 [Collinsella aerofaciens ATCC
            25986]
 gi|133775683|gb|EBA39503.1| Hypothetical protein COLAER_01438 [Collinsella aerofaciens ATCC
            25986]
          Length = 1267

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 345/1027 (33%), Positives = 531/1027 (51%), Gaps = 74/1027 (7%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG- 125
            I+PI GC++     + L   ++     P +  ++LL    EGY  L++ VS   +  QG 
Sbjct: 119  IKPIFGCEVYFTPDETLARDHK-----PELYHMILLAKDQEGYVNLMQTVSEAAV--QGF 171

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLY 183
                R+ L  L+    +G+I  +   +G I +       + A K   TF+  F  GD  Y
Sbjct: 172  YYKPRVTLDNLRR-HAKGMICTSACIAGIIPKYIDRGDMEGAIKWAETFRDTFDPGD-FY 229

Query: 184  VNLQRH-----RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            + +Q H      G  D   +  ++ +A    + ++ATN+  +L  ED    DV+M +  +
Sbjct: 230  IEIQEHGITTDNGLTDEQMDRTLIDIAKQVGVKVIATNDFHYLRREDAPVQDVIMCIGMN 289

Query: 238  TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V   +R R+T  + Y+K   EM ++F   PEA +NT+EIA +C   L   + ILPRF 
Sbjct: 290  AKVDDPNRMRMTGSEFYMKTEEEMRAMFPYCPEACDNTLEIADKCYVELDWDSIILPRF- 348

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                 D  +  E++ R +   GL          +     + ++R ++E  VI    F+ Y
Sbjct: 349  --PLLDPGETHESQFRRECEKGLRQHYGDDWATREIGGVNIKERFEYEYKVICDKGFAAY 406

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVA+++QWAK N I VGPGRGS AG++ AYA+ IT  DPL   L+FERFL+P R  MP
Sbjct: 407  FLIVAEYVQWAKDNGIGVGPGRGSAAGAIVAYAMNITAFDPLENGLMFERFLSPQRTEMP 466

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  +RR EV+ +V+  YG E+V  +IT+ +++AK A+ D  R L  P     RL 
Sbjct: 467  DIDMDFDDERRLEVVEHVRQLYGPEKVTHVITYSTIKAKQAINDAARVLDYPVYMGQRLS 526

Query: 477  KLIPNDPAHPVSLQAIAD---------DSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
            K++ +DP   V L+ + D         +  F EA   D    R+++ +  +EGL R    
Sbjct: 527  KMVSSDPK--VKLKQVLDKQPGKEDLFNPDFAEAYKKDDDARRIIDTALSIEGLTRGEGV 584

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HA  ++I   P+++ VP   D +  + +TQ+    +   GL+K DFLGL+TLT++ K+  
Sbjct: 585  HACAVLICRDPVNEHVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKA 644

Query: 588  FLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             + +  G+ +    IPFDD E + L+ +  T G+FQ+ES+GM   ++ M+P   + ++AL
Sbjct: 645  NIKKNFGIDIKEEEIPFDDPEIFKLMGSGHTAGVFQVESAGMTATIKNMKPTEYKHVVAL 704

Query: 647  VSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ++LYRPGP+   +V  Y NR NGKE  VS    +D +L ET G ++YQEQVM I+  + G
Sbjct: 705  IALYRPGPLGAGMVSSYINRMNGKEPAVSYDDRLDDILGETYGTMVYQEQVMLISVEMCG 764

Query: 705  YSLSEADV-LRRAMGKK--------IKEEMDKQKE----RFISGASKNGISKTIAVNIFE 751
            +S  E+D  +R+ + KK        +    D   E     +++GA KN  ++ +A  I++
Sbjct: 765  FSKGESDSRIRKPVAKKKIKLLTSTVLHWEDGSDETTYDHWMNGAIKNNYTREVAQKIWD 824

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             + +FA Y FNKSH+A YA++  QTAW+K HYP E++AA +T      +KI  +    R 
Sbjct: 825  DVLEFASYAFNKSHSAGYAILVMQTAWLKAHYPHEYMAAVLTSYTGKTDKIVHYVSACRH 884

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCS 870
              I ++ P VN    +F      + + LA I+GVGT  A+ I+ E  A  PF +L DF  
Sbjct: 885  DGIPVLSPDVNESGTEFTATKEGVRFGLAGIRGVGTGVAQAIIAEREAGGPFKTLHDFVE 944

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD-----NIQKYAQWVEKNRTNKHEN 925
            RVDS + NRRV+ESL+ AGA D  GY R Q++  +D     NI   A   +K+R +   +
Sbjct: 945  RVDSSQANRRVIESLIKAGAFDSTGYPRRQMMHFVDKNNPENIIDAAVKRQKDRASGQTS 1004

Query: 926  IFAH----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG-- 979
             F      E   F   +        +  ++   E+ VLG Y S HPL  ++  L K    
Sbjct: 1005 FFDMFGDVEGSGFEVSVPDPDGQEWDRHLKLSQEKEVLGIYVSDHPLRPFEYALAKARDF 1064

Query: 980  -----IKGYE---ESVATI-----RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
                   GYE    +  TI      G  +  A MV S  ++ T+ G  +G V   +   E
Sbjct: 1065 SFSQIDTGYEVQNPTGGTINQEIPEGKALWWAGMVSSVSKRVTKNGDPMGIVQLEDMEGE 1124

Query: 1027 YEANFFP 1033
                 FP
Sbjct: 1125 ATVVVFP 1131



 Score = 41.2 bits (95), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
          +FVHL  H+ +S+L+GA  + +++++      PA+AITD   ++   + +  AC A
Sbjct: 2  AFVHLHNHTVFSMLDGATRIQDMVNRAVELSMPAVAITDHGYMYGVPDLAL-ACDA 56


>gi|186684965|ref|YP_001868161.1| DNA polymerase III subunit alpha [Nostoc punctiforme PCC 73102]
 gi|186467417|gb|ACC83218.1| DNA polymerase III, alpha subunit [Nostoc punctiforme PCC 73102]
          Length = 876

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 324/824 (39%), Positives = 479/824 (58%), Gaps = 88/824 (10%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+  A    AIA+TD   ++ A+E  +   +  I+P
Sbjct: 2   SFVPLHIHSDYSLLDGASQLPELVDQAIALGMKAIALTDHGVMYGAVELIKICRSQNIKP 61

Query: 70  IIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           IIG ++     DI+ Q+     +Q           V+L    +GY+ L++L +  +L  Q
Sbjct: 62  IIGNEMYVINGDIEKQERRPKYHQ-----------VVLAKNTKGYKNLVKLTTISHL--Q 108

Query: 125 GKQS----VRICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
           G Q      R C++  L +   EGLI+ +    G + +A   N    A K    +K +FG
Sbjct: 109 GVQGKGIFSRPCINKDLLKQYHEGLIVTSACLGGEVPQAILSNRPDAARKVAQWYKDVFG 168

Query: 180 DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
           D  Y+ +Q H    DR    ++V++A    + ++ATN+S F+S  D EAHD L+ +    
Sbjct: 169 DDYYLEIQDHGSQEDRIVNVEIVKIARELGIKIIATNDSHFISCFDVEAHDALLCIQTGK 228

Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCS--FIL---QV 287
           ++ +  R R +   YLK+  EM  +F D LP     EA+  T E+A +     I+   Q+
Sbjct: 229 LIIEDKRMRYSGTEYLKSGEEMRQLFRDHLPDDVISEAVATTEEVADKVEPYHIMGEPQI 288

Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFEL 345
             P +P        D   E      + A  GL  RL +    K     D  Y++RL++EL
Sbjct: 289 PTPPIP---SGHTADTYAE------DVAWNGLLERLNR----KSRQEVDSVYKERLEYEL 335

Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +I +M FS YFL+V D+I++A+ NNIPVGPGRGS AGS+ AYA+ IT+IDP+   LLFE
Sbjct: 336 KMIQQMGFSKYFLVVWDYIKFARDNNIPVGPGRGSAAGSLVAYAMRITNIDPVHHGLLFE 395

Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
           RFLNP+R SMPD D DFC ++RD+VI YV  KYG +RVAQIITF  L +KA L+DV R L
Sbjct: 396 RFLNPERKSMPDIDTDFCIEQRDKVIEYVTEKYGADRVAQIITFNRLTSKAVLKDVARVL 455

Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGL 521
            +PY + D++ KLIP     P  L+ +  D      F+E    +P V   L+++ ++EG 
Sbjct: 456 NIPYGEADKMAKLIPVVRGKPTKLKVMVSDKTPEPEFKEKYDKEPHVRHWLDMAMRIEGT 515

Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
            +    HAAG+VI D PL ++VP+ ++    + +TQ+ M+ +E  GL+K DFLGL+ LTL
Sbjct: 516 NKTFGVHAAGVVISDEPLDEIVPLQKNNDGSV-ITQYFMEDLESMGLLKMDFLGLRNLTL 574

Query: 582 LQKSLDFLAQ-RGVKVD-------------------LSLIPFDDHETYHLLTTKGTLGIF 621
           +QK++D + + RG +VD                    S +P D  +TY LL      GIF
Sbjct: 575 IQKTVDLIQETRGYRVDPDEIPRQERKAQKILAKGEHSSLPKDVQKTYELLEAGELEGIF 634

Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLID 679
           QLESSGMRQ +  ++P  IEDI ++++LYRPGP+D  ++  + NRK+G+E I   H +++
Sbjct: 635 QLESSGMRQIVRDLKPSNIEDISSILALYRPGPLDAGLIPKFINRKHGRENIDYQHTVLE 694

Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
           P+L ET G+++YQEQ+M+IAQ ++GYSL +AD+LRRAMGKK   EM KQ+E+F+ GA+KN
Sbjct: 695 PILDETYGIMVYQEQIMKIAQDMAGYSLGQADLLRRAMGKKKVSEMQKQREKFVDGAAKN 754

Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           G+ K +A  +FE + KFA+Y            +SY+T  +   Y
Sbjct: 755 GVPKKVADELFEQMLKFAEY-----------CLSYETEILTVEY 787


>gi|17231070|ref|NP_487618.1| DNA polymerase III subunit alpha [Nostoc sp. PCC 7120]
 gi|17132711|dbj|BAB75277.1| DNA polymerase III alpha subunit [Nostoc sp. PCC 7120]
          Length = 877

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 314/815 (38%), Positives = 478/815 (58%), Gaps = 69/815 (8%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+  A    AIA+TD   ++ A+E  +   +  I+P
Sbjct: 2   SFVPLHIHSDYSLLDGASQLPELIDQAIALGMKAIAVTDHGVMYGAIELLKICRSKNIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS- 128
           IIG ++ I +  +L+   +G+  +  V    +L    +GY+ L++L +  +L  QG Q  
Sbjct: 62  IIGNEMYI-LNGDLEKQERGRPKYHQV----VLAKNTKGYKNLVKLTTISHL--QGVQGK 114

Query: 129 ---VRICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
               R C++   L+E   EGLI+ +    G I +A   N    A K    +K +FGD  Y
Sbjct: 115 GIFSRPCINKDLLKEY-HEGLIVTSACLGGEIPQAILSNRPDAARKVAKWYKDVFGDDFY 173

Query: 184 VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           + +Q H    DR    +++++A   E+  VATN+S ++S  D EAHD L+ +    ++S+
Sbjct: 174 LEIQDHGSQEDRIVNVEIIKIARELEIKFVATNDSHYISCFDVEAHDALLCIQTGKLISE 233

Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296
             R R +   YLK+  EM  +F D      + EA+  T E+A +      +  P +P + 
Sbjct: 234 DKRMRYSGTEYLKSGEEMKLLFRDHLTDDVIAEAIATTEEVADKVEPYHIMGEPRIPNYP 293

Query: 297 --EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                  D   EE       A  GL  +L + +  +      YR+RL++EL ++ +M FS
Sbjct: 294 IPSGHTPDTYVEE------VAWQGLLEKLNRKS--RNEVEPVYRERLEYELKMLQQMGFS 345

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFL+V D+I++A+ NNIPVGPGRGS AGS+ AY + IT+IDP+   LLFERFLNP+R S
Sbjct: 346 SYFLVVWDYIKFARDNNIPVGPGRGSAAGSLVAYTMGITNIDPVHHGLLFERFLNPERKS 405

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           MPD D DFC ++RD+VI YV +KYG ERVAQIITF  L +KA L+DV R L +PY + D+
Sbjct: 406 MPDIDTDFCIEQRDKVIEYVTDKYGKERVAQIITFNRLTSKAVLKDVARVLNIPYGESDK 465

Query: 475 LCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
           + KLIP     P  L+ +  D+     F+E    DP V   L+++ ++EG  +    HAA
Sbjct: 466 MAKLIPVVRGKPTKLKVMISDATPEPEFKEKYDNDPRVRHWLDMAMRIEGTNKTFGVHAA 525

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           G+VI   PL ++VP+ ++    + +TQ+ M+ +E  GL+K DFLGLK LT++QK++D + 
Sbjct: 526 GVVISADPLDEIVPLQKNNDGSV-ITQYFMEDLESMGLLKMDFLGLKNLTMIQKTIDLIE 584

Query: 591 QR-GVKVD-------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
           ++ G ++D                      +P D  +TY LL +    GIFQLESSGM+Q
Sbjct: 585 EKHGFRIDPYEITSQERKAQKILAKGEYKTLPKDVQKTYELLESGELEGIFQLESSGMKQ 644

Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            +  ++P  IEDI ++++LYRPGP+D  ++  + NRK+G+E I     L++P+L ET G+
Sbjct: 645 IVRDLKPSNIEDISSILALYRPGPLDAGLIPKFINRKHGRENIDYESQLLEPILNETYGI 704

Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
           ++YQEQ+M+IAQ ++GY+L +AD+LRRAMGKK   EM KQ+E+FI G++KNG+ K +A  
Sbjct: 705 MVYQEQIMKIAQDMAGYTLGQADLLRRAMGKKKVSEMQKQQEKFIDGSTKNGVKKQVAEK 764

Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           +F+ + KFA+Y            +SY T  +   Y
Sbjct: 765 LFDDMLKFAEY-----------CLSYDTEVLTVEY 788


>gi|296164423|ref|ZP_06846997.1| DNA-directed DNA polymerase III alpha subunit [Mycobacterium
            parascrofulaceum ATCC BAA-614]
 gi|295900205|gb|EFG79637.1| DNA-directed DNA polymerase III alpha subunit [Mycobacterium
            parascrofulaceum ATCC BAA-614]
          Length = 1181

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 355/1077 (32%), Positives = 565/1077 (52%), Gaps = 66/1077 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S SFVHL  H+ YS+L+GA  +  +L ++     PA+ +TD  N+F A EF   A  
Sbjct: 1    MNQSSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNAATK 60

Query: 65   AGIQPIIGCQLDIDMQDN-----LKMTNQGK-----TPFPTVPSIVLLVSTAEGYQRLIE 114
            AGI+PIIG +  I          ++  + G+     +   +   + ++   A G + L +
Sbjct: 61   AGIKPIIGVEAYIAPGSRFDTRRIQWGDPGQKSDDVSGSGSYTHLTMVAENATGLRNLFK 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +         + A +    +
Sbjct: 121  LSSLASFEGQLGKWSRMDAELIAE-HAEGIIATTGCPSGEVQTRLRLGHDREALESAAKW 179

Query: 175  KKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            +++FG D  ++ L  H G     R RE  ++++     +P +ATN+  +++ +    H+ 
Sbjct: 180  REIFGADNYFLELMDH-GLSIEQRVREG-LLEIGRKLGIPPLATNDCHYVTRDAAHNHEA 237

Query: 231  LMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVH 288
            L+ V     +S  +R +   D +YLK+ +EM  ++ D +P A ++T+ IA R      V 
Sbjct: 238  LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRRLWDDQIPGACDSTLLIAERVQPYDDVW 297

Query: 289  A--PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
            A    +P F   E  D    + + L ++ +AGL  R   G        QDY  R ++E+ 
Sbjct: 298  AQRDRMPIFPVPEGHD----QASWLHHEVMAGLRRRFPSGV------GQDYIDRAEYEIK 347

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI    F  YFLIVAD I +A+  +I VGPGRGS AGS+ AYAL IT+IDP+   LLFER
Sbjct: 348  VICDKGFPSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFER 407

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL- 465
            FLNP+R S PD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAAL+D  R   
Sbjct: 408  FLNPERPSAPDIDIDFDDRRRGEMVRYAADKWGQDRVAQVITFGTIKTKAALKDSARIHY 467

Query: 466  -QMPYSQVDRLCKLIPND-PAHPVSLQAIAD--DSRFREAR------LADPSVDRLLEIS 515
             Q  ++  DR+ K +P    A  + L  I D    R++EA         DP V  + + +
Sbjct: 468  GQPGFAIADRITKALPPPIMAKDIPLSGITDPEHERYKEAAEVRGLIETDPDVRTIYQTA 527

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + LEGL R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLG
Sbjct: 528  RGLEGLIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLG 587

Query: 576  LKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L+ LT++  +L+ + A RGV +DL  +P DD  TY LL    TLG+FQL+   MR  L  
Sbjct: 588  LRNLTIIGDALENIKANRGVDLDLESVPLDDEPTYELLGRGDTLGVFQLDGGPMRDLLRR 647

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGV 688
            MQP    DI+A+++LYRPGP+       Y +RKN ++ I  IHP L +P+   L ET G+
Sbjct: 648  MQPTEFNDIVAVLALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILSETYGL 707

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQ+M IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     
Sbjct: 708  IVYQEQIMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFQEGMTANGFSEKAVKA 767

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            +++ +  FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D
Sbjct: 768  LWDTILPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLAD 827

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLED 867
             R+  I ++PP VN   V+F      I + L A++ VG      +++   +K  F    D
Sbjct: 828  CRKLGITVLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIKTRNEKGKFTDFSD 887

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            + +++D    N++V ESL+ AGA D   ++R  L     +        +K       ++F
Sbjct: 888  YLNKIDISACNKKVTESLIKAGAFDSLSHARKGLFLVHTDAVDSVLGTKKAEAIGQFDLF 947

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGIK 981
                G      T   F+++     +E+      E+ +LG Y SGHPL+    +L     +
Sbjct: 948  GGSDGEAG--CTDSVFTIKVPEDEWEDKHKLALEREMLGLYVSGHPLNGVAHLL---AAQ 1002

Query: 982  GYEESVATIRGN-----NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +  A + G+      +R+  ++ S  ++  + G         +     E  FFP
Sbjct: 1003 TDTQIPAILDGDVPNESQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1059


>gi|184155343|ref|YP_001843683.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            fermentum IFO 3956]
 gi|183226687|dbj|BAG27203.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            fermentum IFO 3956]
          Length = 1099

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 360/1044 (34%), Positives = 535/1044 (51%), Gaps = 95/1044 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L V S YSLLE  +    ++         A+ + D   L+ A+ F ++A  AG+ P
Sbjct: 2    GFVPLAVKSMYSLLEAPVRPAELVAVAKERGYQAVGLVDARVLYGAVNFVRRANQAGLHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG  L +   +                 + LL   A GYQ L  L +R  + D+  Q +
Sbjct: 62   VIGVSLPLTFAEG-------------TLDVTLLAKGAVGYQNLTRLSTRA-MTDRANQPL 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
             I    L+E G++ L+++         +      S+       T+ +L    D L +NL 
Sbjct: 108  TI--EDLRE-GSDDLVVIVA------PQLMLLGVSEQ------TYAQLGEVADYLGINLD 152

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRP 246
                +       +  +A    LPL+A     +L+E+DY A  VL A+ A  T+       
Sbjct: 153  ----FTAAERQDLQAVAERCGLPLIAFEPVEYLNEDDYFATQVLRAIKAGHTIEDPLKAS 208

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALE--NTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            + T  H+L+   E+ + +     A     TV +A RC        P+LP F       + 
Sbjct: 209  QRTGRHWLRPAEEVAAAYRAAGLAEAAAQTVAVAERCQVHFADQTPVLPAFPTPAGQGV- 267

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR     GL  R   G  A      +Y+ RL+ EL VI +M F  YFLIV D +
Sbjct: 268  ---ADYLRELCQRGLAKRKLAGDPA------EYQARLEHELTVIHQMGFDNYFLIVWDLM 318

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A ++ I  GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLNP+R  MPD D+D   
Sbjct: 319  NFAHQHQILTGPGRGSAAGSLVAYALAITDVDPLQYGLLFERFLNPERAQMPDIDLDLPD 378

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI----- 479
            +RR+EV+ Y+ + YGHERVAQIITFGSL  K  LRDV R   +P  QVD L ++I     
Sbjct: 379  NRREEVLNYLHHHYGHERVAQIITFGSLGTKQVLRDVSRVFNLPKYQVDSLSQVIDRVKG 438

Query: 480  PN-------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            P+       + A PV  Q +A DS+          V  LLE++ KLEGL RH S HAAG+
Sbjct: 439  PHQTLADLLESAQPV--QNLARDSKL---------VACLLEVAAKLEGLPRHDSIHAAGV 487

Query: 533  VIGDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            V+   PL + VP+   +    + VTQF    +E  GL+K D LGL+ LT ++ +L+ + Q
Sbjct: 488  VLAAEPLIKTVPLQAGNEPGAMLVTQFEKDTVESLGLLKIDLLGLRNLTTVETALNLIHQ 547

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                 DL+ I  +D  T  L     T GIFQ ESSG+RQ L  + PD  E+I+A+ +LYR
Sbjct: 548  HQPDFDLTHIALNDRPTLALFDRGQTSGIFQFESSGIRQTLVNLHPDNFEEIVAVNALYR 607

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+DNI  +  RK G+E +      + P+L  T G+++YQEQVMQ+A ++ G+SL EAD
Sbjct: 608  PGPMDNINHFIARKKGQEAVNLPAKELAPILAPTYGILVYQEQVMQVAAVMGGFSLGEAD 667

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAM KK    M   KE F++GA+K G    +A  +F  + +FA+YGFN+SHA AY+ 
Sbjct: 668  LLRRAMSKKKLATMASMKEAFLAGANKRGYPNAVAEQVFAYIDQFANYGFNRSHAVAYSK 727

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++++ A++K H+P EFLAA M    D   K+  +  +A+Q  I    P++N       + 
Sbjct: 728  MAFEMAYLKVHFPAEFLAALMETNPDT-SKVWAYFSEAKQLGITTHGPAINQSQERVSLV 786

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            D  ++  L  IKG+     R I+E  +   P+  L D  +R+D+K     +   L+ AGA
Sbjct: 787  DQELWLGLDMIKGLRRDFIRAIIEERNQHGPYQDLPDLVNRLDAKWHKEDLFVPLIDAGA 846

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            LD  GY+R ++ + L  I + A++                 G     +  ++      +V
Sbjct: 847  LDHLGYNRAEMAEGLKAILEGAEYA--------------GLGLGMAPVVAQRNEYP-LAV 891

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKT 1009
            R   E  VLG Y SGHP+  Y+ +  K+ +     +VA +R    +RL  MV   ++  T
Sbjct: 892  RLAREHAVLGTYLSGHPVSQYQDLRTKLKLP----TVAQLRPKQRVRLVLMVTRMRKVTT 947

Query: 1010 RKGSR-IGWVTFSEPAKEYEANFF 1032
            ++  + + ++T S+     E   F
Sbjct: 948  KREHKPMAFLTASDETGAVEVTIF 971


>gi|134102263|ref|YP_001107924.1| DNA polymerase III subunit alpha [Saccharopolyspora erythraea NRRL
            2338]
 gi|291003774|ref|ZP_06561747.1| DNA polymerase III subunit alpha [Saccharopolyspora erythraea NRRL
            2338]
 gi|133914886|emb|CAM04999.1| DNA polymerase III alpha subunit [Saccharopolyspora erythraea NRRL
            2338]
          Length = 1194

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 362/1075 (33%), Positives = 560/1075 (52%), Gaps = 66/1075 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YS+L+GA  +  +  +    + PA+ +TD  N+F A EF Q+A   GI+PI
Sbjct: 6    FVHLHVHTEYSMLDGAAKVGALFAEAQRLEMPAVGMTDHGNMFGADEFYQQAKKTGIKPI 65

Query: 71   IGCQLDIDMQDNL--------KMTNQGKTPFP---------TVPSIVLLVSTAEGYQRLI 113
            IG +  +              +   +G   +              + +L   A G + L 
Sbjct: 66   IGIEAYLAPGSRFHKKPVFWGEAKQRGTDEYGEGGDVSGAGAYTHMTMLARNATGLRNLF 125

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L SR  +  Q ++  R+    + E   EG+I  TG  SG +           A +    
Sbjct: 126  TLSSRASMEGQYRKP-RMDRELVAEY-AEGIIATTGCPSGEVQTRLRLRQFDEAMQAASD 183

Query: 174  FKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            +K +FG +  ++ L  H    +R     ++++A    L  VATN+S +++ +  E+H  L
Sbjct: 184  YKDIFGAENFFLELMDHGLPIERSVREGLLKIAKELGLKPVATNDSHYVTADQAESHGAL 243

Query: 232  MAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHA 289
            + V     ++ + R +   D +YLK+ +EM   +  ++P A +NT+ IA R      V +
Sbjct: 244  LCVQSGKTLNDESRFKFDGDGYYLKSAAEMREYWDKEVPGAADNTLLIAERVESYEDVWS 303

Query: 290  --PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                +PR      D   K E   L  +    L  R  +GA       Q+   R+  EL+V
Sbjct: 304  FQDRMPRV----TDGSGKTERQLLEAEVEQYLPTRYPEGA------TQECLDRIKVELDV 353

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            +    +  YFL+V D  +WAK   I VGPGRGS AGS+ AY L IT++DPL   L+FERF
Sbjct: 354  LDTKGYCAYFLVVGDLTRWAKSQGIHVGPGRGSAAGSLLAYILHITNLDPLEHGLIFERF 413

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL-- 465
            LNP+R S PD D+DF   RRDEV++Y  +KYG ++VAQ+ITFG ++ KAA++D  R    
Sbjct: 414  LNPERDSPPDIDLDFDDRRRDEVLQYAIDKYGRDKVAQVITFGKIKTKAAIKDSARVHHG 473

Query: 466  QMPYSQVDRLCKLIPND-PAHPVSLQAIADDSRFREARLA--------DPSVDRLLEISQ 516
            Q  ++  D++ K +P    A  + L  I D    R A  A        DPSV ++ + ++
Sbjct: 474  QPGFAIADKISKALPPPIAAKDIPLSGIVDPQHERYAEAAEVRNLIETDPSVSQIFDTAR 533

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
             LEGL R+A  HA  +++  +PL   VP++ RD  S   +T ++    E  GL+K DFLG
Sbjct: 534  GLEGLIRNAGVHACAVILSSQPLMGTVPLWARDDGS--IITGWDYPSCEAIGLLKMDFLG 591

Query: 576  LKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L  LT+L  +L  + A    ++DLS +  DD +TY LL    +LG+FQLE  GMR+ L+ 
Sbjct: 592  LSNLTILGDALKMVKANHDREIDLSNLGLDDAKTYELLARGESLGVFQLEGGGMRELLKR 651

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK----ETQGV 688
            MQP    DI+A  +LYRPGP++      Y +RKNGK+ +  IHP +D  LK    ET G+
Sbjct: 652  MQPTEFADIVACNALYRPGPMEVNAHNDYADRKNGKKPVEPIHPDLDEPLKDILSETYGL 711

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQ+M IAQ ++GYSL  AD+LRRAMGKK KE +D++ E F +G  + G        
Sbjct: 712  IVYQEQIMAIAQKVAGYSLGRADILRRAMGKKKKEVLDQEFEGFQAGMREQGFRDEAIDK 771

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++  +  FA Y FNKSHAA YA+++Y TA++K +YP E++AA +T   DN +K+  +  +
Sbjct: 772  LWATVLPFAGYAFNKSHAAGYALVAYWTAYLKANYPAEYMAALLTSNGDNKDKMAVYLAE 831

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLED 867
             R+  ++++ P VN    DF    + I + L+A++ VG+     I +   DK  + S  D
Sbjct: 832  CRRMGVKVLSPDVNDSLNDFTAVGSDIRFGLSAVRNVGSNVVASIAKVREDKGRYSSFTD 891

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F  + ++   N+RV+ESL+ AGA D  G++RM L Q  +        +++ +     ++F
Sbjct: 892  FLDKSETVACNKRVIESLIKAGAFDSLGHTRMSLAQHHEAAVDAVIGLKRQQALGQFDLF 951

Query: 928  AHEKGTF----SDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                       S  +   +F+ +    +     E+ +LG Y S HPLD  + +L      
Sbjct: 952  GGGDDAGGEESSSPLAHLQFTPDEWPRKQMLSYEREMLGLYVSAHPLDGAERLLAPYQDT 1011

Query: 982  GYEESVATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            G  E V   R    + +++A M+   Q++  + G     VT  +     E  FFP
Sbjct: 1012 GIAELVGGEREAGKDQVKIAGMISGIQRRINKNGHPWAIVTLEDLDASVEVLFFP 1066


>gi|314967462|gb|EFT11561.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL037PA1]
          Length = 1190

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 333/1014 (32%), Positives = 532/1014 (52%), Gaps = 76/1014 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
           FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +        
Sbjct: 6   FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65

Query: 67  --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102
             I+PIIG +                       D D +    ++  G+        + + 
Sbjct: 66  PLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120

Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
              +EG   L  L S +   +      R+    + +  + G+I  TG  SG +       
Sbjct: 121 AKDSEGLHNLFRL-SSLASYEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRLG 178

Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220
             + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S ++
Sbjct: 179 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 238

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVE 276
           +E+  +AHD L+ V    V   KD P         +Y+K+  +M ++F D PEA +NT+ 
Sbjct: 239 TEDQADAHDSLLCVG---VGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLL 295

Query: 277 IARRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
           +        +V   +  +P+F   E +     +E+ LR K   GL+ +            
Sbjct: 296 LTEMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------P 345

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
           ++  +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  
Sbjct: 346 KEVLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIA 405

Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           I+PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++A
Sbjct: 406 INPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKA 465

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLAD 505
           KAA++D  R L  P++  D++ K +P D     V L  I D S         FR+    +
Sbjct: 466 KAAVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADN 525

Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
           P V +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+
Sbjct: 526 PDVAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEE 585

Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            GL+K DFLGL+ L ++   +  + A RG+ VDL  I  DD  TY +L    TLG+FQL+
Sbjct: 586 MGLMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLD 645

Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----I 678
            + MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP     +
Sbjct: 646 GTAMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDL 705

Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
           D +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  +
Sbjct: 706 DEILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMRE 765

Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
           +G S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+
Sbjct: 766 HGYSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDD 825

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
            +K+  +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A  
Sbjct: 826 KDKMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRARE 885

Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
           +  P      F  +V     N+R++ESL+ AGA D  G+SR  L+   +        +++
Sbjct: 886 ENGPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYEQAVDAVIDIKR 945

Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968
           N+ N  +++F     +   ++ +E+   ++    S +   E+ +LG Y S HPL
Sbjct: 946 NQANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999


>gi|298244334|ref|ZP_06968140.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963]
 gi|297551815|gb|EFH85680.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963]
          Length = 1170

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 339/1059 (32%), Positives = 562/1059 (53%), Gaps = 66/1059 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G   +  ++ +  A     +AITD   ++ A+EF  +    GI P+
Sbjct: 5    FAHLHVHTEYSLLDGLSRIPTLIKQAKALGMEHLAITDHGAMYGAMEFYLECQKQGIHPV 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  ++  + D++    +    +     +VLL  T  GY+ L++L +  +         R
Sbjct: 65   IG--MEAYLVDDVNYKPKKSNAYW---HLVLLAHTQAGYENLMKLTTLGFTQGLYYGKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-FKKLFG-DRLYVNLQR 188
            I    L+    EGLI  +    G I           + +R +  ++ +FG +  Y+  Q+
Sbjct: 120  IDKKMLKN-HAEGLIATSSCLGGEIPELLVERQDMDSARRAVRWYQDVFGPENFYLEFQQ 178

Query: 189  HRGYDRYRE---SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            H G    ++   + + Q+  +  +P + TN+  +++++   AHD+ + +         DR
Sbjct: 179  HYGKGSPQDACNTGLYQIYQSMHVPAILTNDLHYVNKDQANAHDLFLCIQMGNRYDDPDR 238

Query: 246  PRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R   D Y LK+  EM  ++ D+P+ L NTV +A RC          LP F      DI 
Sbjct: 239  FRFDSDEYFLKSPQEMALLYPDIPDVLRNTVLLAERCQIDPTAKKAGLPTF------DIP 292

Query: 305  K---EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                  ++ L +  + G   R  + + +        ++++D+E ++I +  F+ YFLI  
Sbjct: 293  AGFPSPDDYLYDLCLKGARWRFGEVSTS-------VQEQIDYEFSIIKQKGFASYFLIQQ 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D   +A+ + I     RGS AGS+ AY L IT++DPLR+ LLFERF+NP+R  MPD D+D
Sbjct: 346  DVTNYARDHGITC-LARGSAAGSLIAYCLGITNVDPLRYGLLFERFMNPERNDMPDIDMD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            +   RR+EVI Y   +YG E+ AQ++TF +L AK +++DV RAL       +R+ +LIP 
Sbjct: 405  YPDSRREEVINYTMQRYGLEKTAQMVTFNTLAAKGSVKDVARALGKT-DLGERITRLIPT 463

Query: 482  DPAHPVSLQAIADD-SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V+LQ+  DD +  R     +  V  +++ +++LEGL R    HAAG+++  RPL+
Sbjct: 464  GPK--VTLQSSLDDVAELRMLYTQNGEVSEIIDFARQLEGLNRSTGVHAAGVLLSARPLN 521

Query: 541  QLVPMYRDVRSDLPVTQ----FNMKWIE-KAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
            ++VP+ R    D P T     +  KW+E   GLIK+DFLGL  L++L+++L+F+A+ +G 
Sbjct: 522  EIVPLSRKDPKD-PTTPLVCGYEHKWLEDNLGLIKYDFLGLANLSVLREALNFVARTQGE 580

Query: 595  KVDLSLIPFDD----------HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            ++ L  IP D            + + +L+    + +FQLES+ MR+ L+ ++P CIEDI+
Sbjct: 581  ELLLEHIPVDPTPDPVLRERREKAFAMLSRGDAIAVFQLESAKMREYLKQLKPTCIEDIM 640

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            A+V+LYRPGP+D+I  +   K+G++KI  + P +   L E+ GVI+YQ+QV+QIA  L+G
Sbjct: 641  AMVALYRPGPMDSIPEFVACKHGRKKIEYLDPRLSEWLAESYGVIVYQDQVLQIANNLAG 700

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            +S  + +  R+A+ KK  EE++  K  FI G   NG+    A  +FEL+  F  YGFNK+
Sbjct: 701  FSWGKVNKFRKALSKKKMEEVEGYKGDFIQGCVNNGMKAAAAEKLFELVLPFGGYGFNKA 760

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAA+Y V++Y TA++K +YP E++AA++T +  + +++  F  +A +  ++++ P +N  
Sbjct: 761  HAASYGVVAYYTAYLKANYPAEYMAAALTADAGDSKQVAVFIAEAHKMGVKVLGPDINKS 820

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLE 883
             + F V +  I + L AIKG+G      I+ A  D  PF SL DFC RV    + + V+E
Sbjct: 821  ELGFSVEEGNIRFGLLAIKGIGEGPITEILRARTDNGPFTSLVDFCVRVG---VGKGVIE 877

Query: 884  SLVFAGALDCFGYS--RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            +L+ AGALD       R QLL S++    Y +   + R  +   +F+  K   S  + L 
Sbjct: 878  NLIKAGALDSLEGEGKRHQLLASVETAITYGK---RERQAREREVFSLFKDLASAPVPLV 934

Query: 942  KFSVENSSVR----FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---ATIRGNN 994
               VE + +      + E+ ++G Y S HPL     +          E +   A +    
Sbjct: 935  FSLVEAAEISRKQLLDWEKELIGIYISPHPLTYLAHLFDGRVTHSTTELLEKGAEVGKGT 994

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            I L  ++ + +   T+KG  +   T  +         FP
Sbjct: 995  ITLGGVITNIRAFSTKKGDMMCSFTLEDAQGGMVVTVFP 1033


>gi|327183463|gb|AEA31910.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL 1118]
          Length = 1035

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 340/1031 (32%), Positives = 538/1031 (52%), Gaps = 58/1031 (5%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    + +++         A+ + D N  +  + F + A   GI+P++G 
Sbjct: 6    LQNLSSFTLLDSPTKVADLIKTAKEKGYSAVGLADINVTYGLVNFYEIAKKEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI-C 132
            Q+ ++          G         +++   T  GY  L+ L S + LL +  Q+ +I  
Sbjct: 66   QIRLN----------GLIDSTQKYDLLVFAKTNAGYHNLLRLSSAINLLTENGQNDKILT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +   + L+++   +   +   F  N  Q+    L   KK+  D  Y+ +      
Sbjct: 116  LKELTKYLEDLLVIIPANTRSELVYLFETNQ-QLGSDYLRDLKKIVSD-FYLGVYAAEND 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD- 251
              Y +  V  L+   +LPLVA  +S +L   D      L A+  S    Q   P    D 
Sbjct: 174  QDYLDY-VRSLSKQFDLPLVAVEDSEYLRPRDQFLQKTLRAI-RSGQKMQDMVPLAKQDG 231

Query: 252  -HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             HY+ +  +M+  +   DL +A+ NT +IA +C+  +    P+LP++ + +        E
Sbjct: 232  SHYMVDAEQMLERYHRFDLDDAVNNTAKIAEKCNAEVIFQKPVLPKYHQNKF----LTSE 287

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L   A  GL+ R  Q  I       +Y++RL++EL +I +M F  YFLIV D I +  
Sbjct: 288  EYLHYLAQTGLQARFGQEKIPA-----EYQKRLNYELRIINQMGFDDYFLIVWDVINYCH 342

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS  GS+ +Y+L IT++DPL++ LLFERFLNP R  MPD D+D     RD
Sbjct: 343  RVKITTGPGRGSACGSLVSYSLRITEVDPLKYHLLFERFLNPARHEMPDIDLDIPDIHRD 402

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +  ++V++  + IP        
Sbjct: 403  TVIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMAEVNKWARAIPFSKGKMTL 462

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             QA  +    R    A      L   +  LEGL RH S HAAG+VI D  ++ +  +   
Sbjct: 463  KQAYEESRELRLLVDATEENKLLFRTAMALEGLPRHYSIHAAGLVISDDSIAGISGLQAG 522

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
                +PVTQ   K++E  GL+K DFLGL+ LT+L   LD +  +GVK+D + IP +D +T
Sbjct: 523  PLG-IPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILDLVRSQGVKIDPNKIPLNDAKT 581

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T  IFQ ES G+R+ L  + PD  ED++A+ +LYRPGP+ NI  +  RKNGK
Sbjct: 582  LELFQQGKTDAIFQFESEGIRRVLRQLHPDNFEDLVAVNALYRPGPMQNIDTFVARKNGK 641

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++
Sbjct: 642  EPVRYPDPSLKQILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQE 701

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K +FI+G  KNG SK +   ++  + +FA+YGFN+SHA AY  I++  A++K HYP  F 
Sbjct: 702  KSKFIAGVVKNGHSKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFY 761

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             A   L      K +++   A++ NI+++ P +N   +++ + +N I   L AIKG+   
Sbjct: 762  TA--MLNSSTSAKAQQYVMQAQEANIRVLTPDINHSQLEYTLQNNNILVGLKAIKGLRVD 819

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A+ I  A+  KP+ SL DF  R+DSK L    +E+L+ AGA D    +R +LL +  +I
Sbjct: 820  FAKEI--AANTKPYKSLSDFLRRIDSKFLQIDAIEALIMAGAFDQIEDNRNELLANCKDI 877

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                Q          +NI   E     D   L+   +  +  + E E++VLGF  +  PL
Sbjct: 878  IANVQLT-------GQNISLSE--ILGDA-PLKPAEIPTNGEKAEMEEKVLGFATTTTPL 927

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRL------AAMVVSKQQKKTRKGSRIGWVTFSE 1022
                     + ++ Y +    +  N  +          ++S ++ +T+    + +  F++
Sbjct: 928  ---------VAVQKYAQKFNALPLNQFQFNESGIGVGKLMSLKRIRTKNDKTMAFAGFAD 978

Query: 1023 PAKEYEANFFP 1033
             + + E   FP
Sbjct: 979  SSSQQEVIIFP 989


>gi|313820452|gb|EFS58166.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL036PA1]
 gi|313822742|gb|EFS60456.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL036PA2]
          Length = 1190

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 333/1014 (32%), Positives = 531/1014 (52%), Gaps = 76/1014 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
           FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +        
Sbjct: 6   FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65

Query: 67  --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102
             I+PIIG +                       D D +    ++  G+        + + 
Sbjct: 66  PLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120

Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
              +EG   L  L S +   +      R+    + +  + G+I  TG  SG +       
Sbjct: 121 AKDSEGLHNLFRL-SSLASYEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRLG 178

Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220
             + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S ++
Sbjct: 179 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 238

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVE 276
           +E+  +AHD L+ V    V   KD P         +Y+K+  +M ++F D PEA +NT+ 
Sbjct: 239 TEDQADAHDSLLCVG---VGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLL 295

Query: 277 IARRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
           +        +V   +  +P+F   E +     +E+ LR K   GL+ +            
Sbjct: 296 LTEMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------P 345

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
           ++  +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  
Sbjct: 346 KEVLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIA 405

Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           I+PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++A
Sbjct: 406 INPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKA 465

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLAD 505
           KAA++D  R L  P++  D++ K +P D     V L  I D S         FR+    +
Sbjct: 466 KAAVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADN 525

Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
           P V +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+
Sbjct: 526 PDVAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEE 585

Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            GL+K DFLGL+ L ++   +  + A RG+ VDL  I  DD  TY +L    TLG+FQL+
Sbjct: 586 MGLMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKSIALDDKTTYEMLARGDTLGVFQLD 645

Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----I 678
            + MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP     +
Sbjct: 646 GTAMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDL 705

Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
           D +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  +
Sbjct: 706 DEILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMRE 765

Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
           +G S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+
Sbjct: 766 HGYSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDD 825

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
            +K+  +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A  
Sbjct: 826 KDKMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRARE 885

Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
           +  P      F  +V     N+R++ESL+ AGA D  G+SR  L+            +++
Sbjct: 886 ENGPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKR 945

Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968
           N+ N  +++F     +   ++ +E+   ++    S +   E+ +LG Y S HPL
Sbjct: 946 NQANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999


>gi|289428306|ref|ZP_06429993.1| DNA polymerase III, alpha subunit [Propionibacterium acnes J165]
 gi|289158455|gb|EFD06671.1| DNA polymerase III, alpha subunit [Propionibacterium acnes J165]
 gi|313807645|gb|EFS46132.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL087PA2]
 gi|313818682|gb|EFS56396.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL046PA2]
 gi|313825324|gb|EFS63038.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL063PA1]
 gi|314925061|gb|EFS88892.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL036PA3]
 gi|314960402|gb|EFT04504.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL002PA2]
 gi|314978578|gb|EFT22672.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL072PA2]
 gi|314987996|gb|EFT32087.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL005PA2]
 gi|314989806|gb|EFT33897.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL005PA3]
 gi|315084184|gb|EFT56160.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL027PA2]
 gi|315085527|gb|EFT57503.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL002PA3]
 gi|315088416|gb|EFT60392.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL072PA1]
 gi|327331815|gb|EGE73552.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL096PA3]
 gi|327443592|gb|EGE90246.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL013PA2]
 gi|328753347|gb|EGF66963.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL020PA1]
          Length = 1190

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 333/1014 (32%), Positives = 531/1014 (52%), Gaps = 76/1014 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
           FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +        
Sbjct: 6   FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65

Query: 67  --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102
             I+PIIG +                       D D +    ++  G+        + + 
Sbjct: 66  PLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120

Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
              +EG   L  L S +   +      R+    + +  + G+I  TG  SG +       
Sbjct: 121 AKDSEGLHNLFRL-SSLASYEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRLG 178

Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220
             + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S ++
Sbjct: 179 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 238

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVE 276
           +E+  +AHD L+ V    V   KD P         +Y+K+  +M ++F D PEA +NT+ 
Sbjct: 239 TEDQADAHDSLLCVG---VGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLL 295

Query: 277 IARRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
           +        +V   +  +P+F   E +     +E+ LR K   GL+ +            
Sbjct: 296 LTEMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------P 345

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
           ++  +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  
Sbjct: 346 KEVLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIA 405

Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           I+PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++A
Sbjct: 406 INPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKA 465

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLAD 505
           KAA++D  R L  P++  D++ K +P D     V L  I D S         FR+    +
Sbjct: 466 KAAVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADN 525

Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
           P V +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+
Sbjct: 526 PDVAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEE 585

Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            GL+K DFLGL+ L ++   +  + A RG+ VDL  I  DD  TY +L    TLG+FQL+
Sbjct: 586 MGLMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKSIALDDKTTYEMLARGDTLGVFQLD 645

Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----I 678
            + MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP     +
Sbjct: 646 GTAMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDL 705

Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
           D +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  +
Sbjct: 706 DEILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMRE 765

Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
           +G S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+
Sbjct: 766 HGYSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDD 825

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
            +K+  +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A  
Sbjct: 826 KDKMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRARE 885

Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
           +  P      F  +V     N+R++ESL+ AGA D  G+SR  L+            +++
Sbjct: 886 ENGPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKR 945

Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968
           N+ N  +++F     +   ++ +E+   ++    S +   E+ +LG Y S HPL
Sbjct: 946 NQANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999


>gi|239637978|ref|ZP_04678939.1| DNA polymerase III subunit alpha [Staphylococcus warneri L37603]
 gi|239596541|gb|EEQ79077.1| DNA polymerase III subunit alpha [Staphylococcus warneri L37603]
          Length = 1064

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 338/1028 (32%), Positives = 549/1028 (53%), Gaps = 91/1028 (8%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L +H+SY LL  +L ++++++K   +    +AITDTN L+   +F      AGI P+ G
Sbjct: 4    YLNIHTSYDLLNSSLRISDVVNKAKNEGIETLAITDTNVLYGYPKFYDACIEAGIHPVFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              + + + D L                VLL    +G + L +L S + +    K+   I 
Sbjct: 64   --MTVYLTDGLYQL-----------ETVLLAQNNDGLKDLYQLSSAIKM----KEKEDIP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            + WL+      +I+  G                  E+    F + F D+ +V L +    
Sbjct: 107  IEWLKRYANHLIIIFKG-----------------VEEHHQLFIEAFHDKKHVYLNQ---- 145

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKDRPRV 248
                               V  N   +L++ED +    L A+  ++    V  Q+D    
Sbjct: 146  ---------DCIAIENRSFVWLNTMRYLNKEDADTISALQAIKENSKLDLVAEQEDYHE- 195

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                ++ N++E+ ++  +  E +  T EIA+ C+  L  H  +LP+F         +   
Sbjct: 196  ----HVFNKNELRNLEIN-DELIIKTDEIAQLCTAELNYHQSLLPQF---------QTPN 241

Query: 309  NELRNKAV-AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             EL    +   LE +L    + +     DY +RL  E ++I  M F  YFLIV+D I +A
Sbjct: 242  GELSKTYLWQKLEEKLNHLNLNR----PDYWERLKHEYDIITNMGFEDYFLIVSDLIHYA 297

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K +++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR
Sbjct: 298  KTHDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRR 357

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            ++VI+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ + KLIP+     +
Sbjct: 358  EKVIQYVQEKYGQLHVSGIVTFGHLLARAVARDVGRIMGFEEITLNEISKLIPHKLG--I 415

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            +L+    +  F++    +   +R  EI +KLEGL RH STHAAGI+I D  L +  P+  
Sbjct: 416  TLEEAYQNDEFKQFVHRNYRHERWFEICKKLEGLPRHTSTHAAGIIINDHALYEYAPL-- 473

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606
             +     +TQ+ M   E+ GL+K DFLGL+ L+++ + ++ + +   + +++  IPFDD 
Sbjct: 474  TLGDTGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIINQVKKDLNISIEIESIPFDDP 533

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + + LL+   T GIFQLES G+R+ L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R+ 
Sbjct: 534  KVFELLSQGDTTGIFQLESDGVRRVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRQ 593

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
               K+  +H  + P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++
Sbjct: 594  DPSKVEYLHEDLAPILKNTYGVIIYQEQIMQIASQFANFSYGEADILRRAMSKKNRAVLE 653

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             +++ F+ GA +NG  + ++  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  
Sbjct: 654  SERQHFVDGAKQNGYDEYMSKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPNY 713

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F A  ++  + + +K      +A+  +I I+PP++N     +K  ++ IY SL AIKGVG
Sbjct: 714  FYANILSNVIGSEKKTAAMIDEAKHQSITILPPNINESYWFYKATNDGIYLSLGAIKGVG 773

Query: 847  TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
              + + I+ E   +  F    DF  R+  +   R++LESL+  GA D FG +R  LL S+
Sbjct: 774  YQSVKLIVDERYQNGDFKDFFDFARRLPKRVKTRKLLESLILVGAFDIFGKNRATLLHSI 833

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D +      +E++     + +F      F+ K + E+    +  +  E E+  LGFY S 
Sbjct: 834  DQVIDQVTDIEQD-----DMLF----DFFTPKQSYEEKEELSDQLISEYEKEYLGFYISK 884

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP++  K   +K  +  Y+ S A    N   +       ++ +T+ G  + +VT ++   
Sbjct: 885  HPVE--KEFNKKQYLTIYKLSNAK---NYQPILVQFNQIKRIRTKNGQNMAFVTLNDGVH 939

Query: 1026 EYEANFFP 1033
              +   FP
Sbjct: 940  LLDGVIFP 947


>gi|170785363|gb|ACB37722.1| DNA polymerase III alpha subunit [Micromonospora chalcea]
          Length = 1031

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 338/929 (36%), Positives = 503/929 (54%), Gaps = 64/929 (6%)

Query: 148  TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYD---RYRESQVVQL 203
            TG  SG +           A K    ++ +FG D  ++ L  H G D   R RE  + ++
Sbjct: 4    TGCPSGAVQTRLRLGQFDEAIKVASAYQDIFGKDNYFLELMDH-GLDIERRVREG-LTEI 61

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY-LKNRSEMVS 262
                 +P V TN+S +  E   EAHDVL+ V   + ++  +R R     Y +K+  +M +
Sbjct: 62   GKKLGIPPVVTNDSHYTHEAQAEAHDVLLCVQTGSNIADPNRFRFEGGGYFIKSADQMRA 121

Query: 263  IFSD--LPEALENTVEIARRC--SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
            + S     +   NT+ +A +   + + + H  ++PRF   E +     EE+  R +   G
Sbjct: 122  VDSSELWLQGCRNTLLVAEKVDPAGMFEFHN-LMPRFPIPEGE----TEESWFRKETFKG 176

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            L  R   G I +G+  Q      ++EL VI +M F  YFL+VADFIQWAK   I VGPGR
Sbjct: 177  LARRFP-GGIPEGHVVQ-----AEYELGVIIQMGFPSYFLVVADFIQWAKNQGIAVGPGR 230

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GS AGS+ AYAL ITD+DP+   L+FERFLNP+R+SMPD DIDF + RR EVI+YV +K+
Sbjct: 231  GSAAGSLVAYALGITDLDPIPHGLIFERFLNPERVSMPDVDIDFDERRRGEVIKYVTDKW 290

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-------------DPAH 485
            G ++VAQI TFG+++AKAA++D  R L  PY+  DR+ K +P              DP H
Sbjct: 291  GEDKVAQIATFGTIKAKAAIKDSARVLGYPYAVGDRITKAMPPAVMGKDIPLSGIFDPKH 350

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            P   +A       R    +DP V ++++ ++ +EGL R    HAAG+++   P+ + +P+
Sbjct: 351  PRYAEA----GEIRGLYESDPDVKKVIDTAKGIEGLIRQTGVHAAGVIMSAEPIIEHIPL 406

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFD 604
             R     + +TQF+    E  GL+K DFLGL+ LT++  ++ +     G  +DL  +  D
Sbjct: 407  MRRDSDGVIITQFDYPTCESLGLLKMDFLGLRNLTIIDDAVKNIQLNHGKDLDLLGLDLD 466

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYN 662
            D   Y LL    TLG+FQL+   MR  L  M+PD  EDI A+++LYRPGP  +D+   Y 
Sbjct: 467  DKAAYELLARGDTLGVFQLDGGPMRSLLRLMKPDNFEDISAVLALYRPGPMGVDSHTNYA 526

Query: 663  NRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             RKNG ++I  IHP ++  L+E    T G+I+YQEQV + AQ+L+GY+L +AD+LRRAMG
Sbjct: 527  LRKNGLQEITPIHPELEEPLREILAPTHGLIVYQEQVQRAAQILAGYTLGQADLLRRAMG 586

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK KE +DK+   F  G  + G S      ++++L  FA Y FNK+H+AAY ++SY TA+
Sbjct: 587  KKKKEILDKEFVPFRDGCRERGYSDEAIQAVWDVLVPFAGYAFNKAHSAAYGLVSYWTAY 646

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K HYP E++A  +T   D+ +K+  +  + R+  IQ++PP VNT    F      I + 
Sbjct: 647  LKAHYPAEYMAGLLTSVGDDKDKMALYLSECRRMGIQVLPPDVNTSAGPFTPVGKDIRFG 706

Query: 839  LAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            LAAI+ VG      IM    +K  +    DF ++VD+   N++ +ESL+ AGA D  G+S
Sbjct: 707  LAAIRNVGANVVASIMRCRQEKGEYADFYDFLAKVDAVVCNKKTIESLIKAGAFDVMGHS 766

Query: 898  RMQLLQ-SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV------ 950
            R  LL    D I  YA    K    +++   A     F D  T+   +    ++      
Sbjct: 767  RKGLLAVHADAIDAYADVKRKEAVGQYDLFGA----GFGDTETVGGNTTVMPTIGEAEWD 822

Query: 951  ---RFENEQRVLGFYFSGHPLDVYKPILRKMG---IKGYEESVATIRGNNIRLAAMVVSK 1004
               +   E+ +LG Y S HPL   + +L       I    E      G  + LA ++   
Sbjct: 823  KRDKLAFEREMLGLYVSDHPLFGLEHVLGAAADCTIAALSEEGTVPDGAVVTLAGILSGV 882

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q++ T++G      T  + A   EA FFP
Sbjct: 883  QRRVTKQGRAWASATLEDLAGGVEALFFP 911


>gi|75907825|ref|YP_322121.1| DNA polymerase III subunit alpha [Anabaena variabilis ATCC 29413]
 gi|75701550|gb|ABA21226.1| intein [Anabaena variabilis ATCC 29413]
          Length = 877

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 313/815 (38%), Positives = 477/815 (58%), Gaps = 69/815 (8%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+  A    AIA+TD   ++ A+E  +   +  I+P
Sbjct: 2   SFVPLHIHSDYSLLDGASQLPELIDQAIALGMKAIAVTDHGVMYGAIELLKICRSKNIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS- 128
           IIG ++ I +  +L    +G+  +  V    +L    +GY+ L++L +  +L  QG Q  
Sbjct: 62  IIGNEMYI-LNGDLAKQERGRPKYHQV----VLAKNTKGYKNLVKLTTISHL--QGVQGK 114

Query: 129 ---VRICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
               R C++   L+E   EGLI+ +    G I +A   N    A K    +K +FGD  Y
Sbjct: 115 GIFSRPCINKDLLKEY-HEGLIVTSACLGGEIPQAILSNRPDAARKVAKWYKDVFGDDFY 173

Query: 184 VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           + +Q H    DR    +++++A   ++  VATN+S ++S  D EAHD L+ +    ++S+
Sbjct: 174 LEIQDHGSQEDRIVNVEIIKIARELDIKFVATNDSHYISCFDVEAHDALLCIQTGKLISE 233

Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296
             R R +   YLK+  EM  +F D      + EA+  T E+A +      +  P +P + 
Sbjct: 234 DKRMRYSGTEYLKSGEEMKLLFRDHLTDDVIAEAIATTEEVADKIEPYHIMGEPRIPNYP 293

Query: 297 --EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                  D   EE       A  GL  +L + +  +      YR+RL++EL ++ +M FS
Sbjct: 294 IPSGHTPDTYVEE------VAWQGLLDKLNRKS--RNEVEPVYRERLEYELKMLQQMGFS 345

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFL+V D+I++A+ NNIPVGPGRGS AGS+ AY + IT+IDP+   LLFERFLNP+R S
Sbjct: 346 SYFLVVWDYIKFARDNNIPVGPGRGSAAGSLVAYTMGITNIDPVHHGLLFERFLNPERKS 405

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           MPD D DFC ++RD+VI YV +KYG ERVAQIITF  L +KA L+DV R L +PY + D+
Sbjct: 406 MPDIDTDFCIEQRDKVIEYVTDKYGKERVAQIITFNRLTSKAVLKDVARVLNIPYGEADK 465

Query: 475 LCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
           + KLIP     P  L+ +  D+     F+E    DP V   L+++ ++EG  +    HAA
Sbjct: 466 MAKLIPVVRGKPTKLKVMVSDTTPEPEFKEKYDNDPRVRHWLDMAMRIEGTNKTFGVHAA 525

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           G+VI   PL ++VP+ ++    + +TQ+ M+ +E  GL+K DFLGLK LT++QK++D + 
Sbjct: 526 GVVISADPLDEIVPLQKNNDGSV-ITQYFMEDLESMGLLKMDFLGLKNLTMIQKTIDLIE 584

Query: 591 QR-GVKVD-------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
           ++ G ++D                      +P D  +TY LL +    GIFQLESSGM+Q
Sbjct: 585 EKHGFRIDPYEITSQERKAQKILAKGEYKTLPKDVQKTYELLESGELEGIFQLESSGMKQ 644

Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            +  ++P  IEDI ++++LYRPGP+D  ++  + NRK+G+E I     +++P+L ET G+
Sbjct: 645 IVRDLKPSNIEDISSILALYRPGPLDAGLIPKFINRKHGRENIDYESQVLEPILNETYGI 704

Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
           ++YQEQ+M+IAQ ++GY+L +AD+LRRAMGKK   EM KQ+E+FI G++KNG+ K +A  
Sbjct: 705 MVYQEQIMKIAQDMAGYTLGQADLLRRAMGKKKVSEMQKQQEKFIDGSTKNGVKKQVAEK 764

Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           +FE + KFA+Y            +SY T  +   Y
Sbjct: 765 LFEDMLKFAEY-----------CLSYDTEVLTVEY 788


>gi|289425264|ref|ZP_06427041.1| DNA polymerase III subunit alpha [Propionibacterium acnes SK187]
 gi|295130708|ref|YP_003581371.1| DNA polymerase III, alpha subunit [Propionibacterium acnes SK137]
 gi|289154242|gb|EFD02930.1| DNA polymerase III subunit alpha [Propionibacterium acnes SK187]
 gi|291376065|gb|ADD99919.1| DNA polymerase III, alpha subunit [Propionibacterium acnes SK137]
 gi|313772287|gb|EFS38253.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL074PA1]
 gi|313792016|gb|EFS40117.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL110PA1]
 gi|313802034|gb|EFS43268.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL110PA2]
 gi|313810152|gb|EFS47873.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL083PA1]
 gi|313812820|gb|EFS50534.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL025PA1]
 gi|313827619|gb|EFS65333.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL063PA2]
 gi|313830483|gb|EFS68197.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL007PA1]
 gi|313833519|gb|EFS71233.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL056PA1]
 gi|313838855|gb|EFS76569.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL086PA1]
 gi|314962672|gb|EFT06772.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL082PA1]
 gi|314973483|gb|EFT17579.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL053PA1]
 gi|314976163|gb|EFT20258.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL045PA1]
 gi|314983815|gb|EFT27907.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL005PA1]
 gi|315077888|gb|EFT49939.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL053PA2]
 gi|315080513|gb|EFT52489.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL078PA1]
 gi|315096030|gb|EFT68006.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL038PA1]
 gi|327326310|gb|EGE68100.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL096PA2]
 gi|327445796|gb|EGE92450.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL043PA2]
 gi|327448221|gb|EGE94875.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL043PA1]
 gi|327453265|gb|EGE99919.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL092PA1]
 gi|328760728|gb|EGF74294.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL099PA1]
          Length = 1190

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 333/1014 (32%), Positives = 531/1014 (52%), Gaps = 76/1014 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
           FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +        
Sbjct: 6   FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65

Query: 67  --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102
             I+PIIG +                       D D +    ++  G+        + + 
Sbjct: 66  PLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120

Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
              +EG   L  L S +   +      R+    + +  + G+I  TG  SG +       
Sbjct: 121 AKDSEGLHNLFRL-SSLASYEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRLG 178

Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220
             + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S ++
Sbjct: 179 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 238

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVE 276
           +E+  +AHD L+ V    V   KD P         +Y+K+  +M ++F D PEA +NT+ 
Sbjct: 239 TEDQADAHDSLLCVG---VGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLL 295

Query: 277 IARRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
           +        +V   +  +P+F   E +     +E+ LR K   GL+ +            
Sbjct: 296 LTEMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------P 345

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
           ++  +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  
Sbjct: 346 KEVLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIA 405

Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           I+PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++A
Sbjct: 406 INPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKA 465

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLAD 505
           KAA++D  R L  P++  D++ K +P D     V L  I D S         FR+    +
Sbjct: 466 KAAVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADN 525

Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
           P V +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+
Sbjct: 526 PDVAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEE 585

Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            GL+K DFLGL+ L ++   +  + A RG+ VDL  I  DD  TY +L    TLG+FQL+
Sbjct: 586 MGLMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLD 645

Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----I 678
            + MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP     +
Sbjct: 646 GTAMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDL 705

Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
           D +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  +
Sbjct: 706 DEILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMRE 765

Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
           +G S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+
Sbjct: 766 HGYSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDD 825

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
            +K+  +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A  
Sbjct: 826 KDKMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRARE 885

Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
           +  P      F  +V     N+R++ESL+ AGA D  G+SR  L+            +++
Sbjct: 886 ENGPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKR 945

Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968
           N+ N  +++F     +   ++ +E+   ++    S +   E+ +LG Y S HPL
Sbjct: 946 NQANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999


>gi|313837783|gb|EFS75497.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL037PA2]
 gi|314927335|gb|EFS91166.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL044PA1]
 gi|314972435|gb|EFT16532.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL037PA3]
          Length = 1219

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 330/1011 (32%), Positives = 528/1011 (52%), Gaps = 70/1011 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +        
Sbjct: 35   FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 94

Query: 67   --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102
              ++PIIG +                       D D +    ++  G+        + + 
Sbjct: 95   PLVKPIIGIEAYVAPSTRTSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 149

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
                EG   L  L S +   +      R+    + +   +G+I  TG  SG +       
Sbjct: 150  AKDPEGLHNLFRL-SSLASYEGYYMKPRMDRELMSQY-PDGIIASTGCPSGEVQTRLRLG 207

Query: 163  SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220
              + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S ++
Sbjct: 208  QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLRLAKKLDIPLLVTNDSHYV 267

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            +E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ +  
Sbjct: 268  TEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDYPEACDNTLLLTE 327

Query: 280  RCSFILQV--HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
                  +V  H   +P+F   E +     +E+ LR K   GL+ +            ++ 
Sbjct: 328  MIGSYDEVFKHVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------PKEV 377

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             +RL+ EL+VI  + FS YFLIV+D    A+   +PVGPGRGS AGS+ AY   I  I+P
Sbjct: 378  LERLETELSVIEPLGFSSYFLIVSDICSAARSMGVPVGPGRGSAAGSLVAYLTGIIAINP 437

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
            L   LLFERFLNP+R++ PD D+DF   +RD+VI YV  KYG E  +Q+ TFG ++AKAA
Sbjct: 438  LEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTYKYGAEYTSQVNTFGKIKAKAA 497

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLADPSV 508
            ++D  R L  P+S  D++ K +P D     V L  I D S         FR+    +P V
Sbjct: 498  VKDANRILGYPFSLGDKITKAMPPDVMGKGVPLDKIFDPSHERYGEGQEFRQLVADNPDV 557

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
             ++++ ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ GL
Sbjct: 558  AKVVDTARGLEGLIRGTGVHACAFILSSAPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGL 617

Query: 569  IKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            +K DFLGL+ L ++   +  +   RG+ VDL  +  DD  TY +L    TLG+FQL+ + 
Sbjct: 618  MKMDFLGLRNLGIMDHCIKIIKDNRGIDVDLKDLALDDTATYEMLARGDTLGVFQLDGTA 677

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPM 681
            MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP     +D +
Sbjct: 678  MRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEI 737

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G 
Sbjct: 738  LAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGY 797

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +K
Sbjct: 798  SDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDK 857

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK- 860
            +  +  D R  +I ++PP VN   ++F      I + L A++ VG      I+ A  +  
Sbjct: 858  MAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREENG 917

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            P      F  RV     N+R++ESL+ AGA D  G+SR  L+   +        +++N+ 
Sbjct: 918  PAPDFFTFLDRVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAIYEQAVDAVIDIKRNQV 977

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968
            N  +++F     +   ++ +E+   ++    S +   E+ +LG Y S HPL
Sbjct: 978  NGQDDLFGMGDDSQPSQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 1028


>gi|307154137|ref|YP_003889521.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 7822]
 gi|306984365|gb|ADN16246.1| DNA polymerase III, alpha subunit [Cyanothece sp. PCC 7822]
          Length = 875

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 319/816 (39%), Positives = 477/816 (58%), Gaps = 70/816 (8%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+      PAIA+TD   ++ A+E  +      I+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAIELIKICRGKNIKP 61

Query: 70  IIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL--VSRMYLLDQ 124
           IIG ++ I   D+ D  K   +           V+L    +GY+ L++L  +S ++ +  
Sbjct: 62  IIGNEMYIINADLDDRTKKQRKYHQ--------VVLAKNNQGYKNLVKLTTISSLHGMHG 113

Query: 125 GKQSVRICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                R C++  L E   EGLI+ +    G + +A    + + A+K    ++ LFGD  Y
Sbjct: 114 KGIFARPCINKKLLEQYHEGLIVTSACLGGEVPQAILAGNLEEAKKVAKWYQDLFGDDYY 173

Query: 184 VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           + +Q H    DR     +V++A    + +VATN+S F+S  D EAHD L+ +    ++S+
Sbjct: 174 LEIQDHGSKEDRIVNLGIVKIAKELGIKIVATNDSHFISCYDVEAHDALLCIQTGQLISE 233

Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHA-PILPRF 295
           + R R +   YLK+  EM  +F D      + EA++NT+E+A +     ++   P +P +
Sbjct: 234 EKRMRYSGTEYLKSAEEMRQLFRDHLEDEIIEEAIKNTLEVAEKVVQDYKILGEPRIPDY 293

Query: 296 I--EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
                   D   EE      KA  GL  RL   +I +      Y++RL++EL +I +M F
Sbjct: 294 PVPAGHTPDTYVEE------KAWQGLLERLKCHSITELNPL--YKKRLEYELKMIQQMGF 345

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
           S YFL+V D+I++A+ N IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP+R 
Sbjct: 346 STYFLVVWDYIKYARDNGIPVGPGRGSAAGSLVAYSLKITNIDPVHHGLLFERFLNPERK 405

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
           SMPD D DFC +RRD++I+YV  KYG   VAQIITF  L +KA L+DV R L +PY++ D
Sbjct: 406 SMPDIDTDFCIERRDDMIKYVTKKYGEGNVAQIITFNRLTSKAVLKDVARVLDIPYAESD 465

Query: 474 RLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
           ++ KLIP     P  L+ +  D      F+     DP+V R ++++ ++EG  +    HA
Sbjct: 466 KMAKLIPVSRGKPTKLKVMISDETPEPEFKAKYDNDPNVKRWVDMAIRIEGTNKTFGVHA 525

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
           AG+VI  +PL ++VP+ ++    + +TQ+ M+ +E  GL+K DFLGLK LT LQK+ + +
Sbjct: 526 AGVVISSQPLDEIVPLQKNNDGAV-ITQYYMEDLESLGLLKMDFLGLKNLTTLQKTAELI 584

Query: 590 AQ-RGVKVDLSLIPFD------------------DHETYHLLTTKGTL-GIFQLESSGMR 629
            Q +   +D+  +P D                  D E  H L  +G L GIFQLESSGMR
Sbjct: 585 KQNKQEDIDVETLPLDERKALEIIAKGVYKKLPKDIEATHKLLERGDLEGIFQLESSGMR 644

Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQG 687
           Q +  ++P  IEDI ++++LYRPGP+D  ++  + +RK+G+  I   HPL++P+LKET  
Sbjct: 645 QIVRDLKPSGIEDISSILALYRPGPLDAGLIPKFIDRKHGRVPIKYDHPLLEPILKETYA 704

Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
           V++YQEQ+M++AQ L+GYSL EAD+LRRAMGKK   EM K KE FI G++KNG+ + IA 
Sbjct: 705 VLVYQEQIMKMAQDLAGYSLGEADLLRRAMGKKKISEMQKHKEIFIDGSTKNGVPQEIAE 764

Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           N+F+ + KFA+Y            +SY T  +   Y
Sbjct: 765 NLFDQMVKFAEY-----------CLSYDTEILTVEY 789


>gi|255535519|ref|YP_003095890.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium
            3519-10]
 gi|255341715|gb|ACU07828.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium
            3519-10]
          Length = 1567

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 331/1039 (31%), Positives = 547/1039 (52%), Gaps = 92/1039 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------------ 58
            + +   HS YS L+ +  +N ++ K   +   A+ I D  N+  A +F            
Sbjct: 263  YFNFHNHSIYSSLQSSTHINELISKAMDNDLKAVGIVDLGNMMGAFKFVSEVEKTNAQIK 322

Query: 59   ---------SQKACAAG------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
                      +KA   G            + P+IGC+  I  +   K   +      T  
Sbjct: 323  KTYQTYLENKEKADREGTAFTEKEPRKEPLIPVIGCEFYISDRPEQKQFTKDDPDRRT-- 380

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            ++VLL     GY+ L++L S  Y+        RI    + E   + LI LT G+ G +  
Sbjct: 381  NVVLLAKNFSGYKNLVKLSSLGYVNGFYFGVPRISRKMIAEF-KDNLIALTAGTLGDVPS 439

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNN 216
                   Q  E+    +K  FG+  YV +Q H   +    ++V +  A  +++ ++A N 
Sbjct: 440  TVLEFGEQKGEEVFKWWKNTFGEDFYVQIQNHEVEEEEHLNEVLLGFADQYDVKILAQNE 499

Query: 217  SLFLSEEDYEAHDVLMAVAHSTVVSQ-------KDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            + + ++ D    D+L  +     +S        K R   +   Y+KN  E+   F   P+
Sbjct: 500  TFYTNKSDANIQDILYCIKDGEKLSSPVGKGFGKRRGLPSKQFYIKNTDELKQSFIQFPD 559

Query: 270  ALENTVEIARRCSFILQVHAPILPRFI--------EKECDDIQKEEENELRNKAVAGLEV 321
            A E   E+  +          +LP F         E + D  ++ E   LR+   AG E 
Sbjct: 560  AFEAYTELLGKFEPYTLKRDVLLPEFDIPEEFLHDEDKTDGGKRGENAYLRHLTYAGAEK 619

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
            R  +          + R+RLDFEL VIA+  + GYFLIV DF   A+K  + VGPGRGS 
Sbjct: 620  RYPE-------ITDEIRKRLDFELEVIAKTGYPGYFLIVQDFCNEARKMGVWVGPGRGSA 672

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            AGS  AY   IT++DP+ ++LLFERFLNP+R+SMPD DIDF  + RD++I++V  KYG  
Sbjct: 673  AGSAVAYCTGITNVDPIEYNLLFERFLNPERISMPDIDIDFDDEGRDKIIKWVVEKYGKN 732

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-----LQAIADDS 496
             VAQIIT+  L  K+A++D GR L +   + + + KLIP+ P   ++      + +  + 
Sbjct: 733  NVAQIITYSVLGGKSAIKDAGRVLDLSIPETNNIAKLIPSAPGMNIAKAFSKFEKLPPED 792

Query: 497  RF--REAR--LADPSVDR--LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            +   +E +  LA+P+ +R  +L  +Q++EG  R+   HA G++I    +S L+P+    +
Sbjct: 793  KVLAQEMKDILANPTDERYDVLYAAQRMEGCIRNTGIHACGVIITPEDISNLIPITIAAK 852

Query: 551  S-DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET 608
              D+ V+QF+    E AGL+K DFLGL+TLT+++ ++  + +R G ++D+  +P DD +T
Sbjct: 853  DPDILVSQFDNSVAESAGLLKMDFLGLRTLTIIKHAIKLIKERHGTEIDIDHVPLDDAKT 912

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y L     T+GIFQ ES GM++ +  ++P    D+IA+ +LYRPGPI  I  + NRKN  
Sbjct: 913  YQLFQEGRTIGIFQYESPGMQKYMRELKPTKFADLIAMNALYRPGPIKYIPNFINRKNEI 972

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E+ V         L+ET G+ +YQEQVM ++Q L+ ++  EAD LR+AMGKK +  +DK 
Sbjct: 973  EETVYDLEETKEFLEETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKDRATLDKM 1032

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
              +F+    KN ++      I++    FA+Y FNKSH+  YA+I+Y TA++K +YP E++
Sbjct: 1033 YPKFLEEGQKNNLNVDKLNKIWKDWEAFAEYAFNKSHSTCYALIAYHTAYLKANYPAEYM 1092

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGT 847
            A+ MT  ++N ++I  F +D +   + ++ P+VN    +F V +  +I + L AIKG+G+
Sbjct: 1093 ASVMTNNLNNTKQITMFMEDCKSIGVDVLGPAVNESQYEFSVNEKGQIRFGLGAIKGIGS 1152

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQ--- 903
              +  I++   ++ + ++ DF  ++ S ++N+RV ESLV AGA D    Y R Q      
Sbjct: 1153 GPSEAIVDGRKNEKYKNIYDFFEKIPSSQMNKRVAESLVVAGAFDEVDRYHRAQYFDIDI 1212

Query: 904  ----SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN----- 954
                +++ + +Y Q  + ++     ++FA     F++++ +E+  + N +  ++N     
Sbjct: 1213 TGKTTIERLLRYGQSFQDSKNEIENSLFAD----FAEEVKIEQPKI-NPAPEWQNMHMLN 1267

Query: 955  -EQRVLGFYFSGHPLDVYK 972
             E+ ++GFY S HPLD Y+
Sbjct: 1268 KEKEIIGFYLSAHPLDEYR 1286


>gi|314918129|gb|EFS81960.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL050PA1]
          Length = 1190

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 332/1014 (32%), Positives = 531/1014 (52%), Gaps = 76/1014 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
           FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +        
Sbjct: 6   FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65

Query: 67  --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102
             I+PIIG +                       D D +    ++  G+        + + 
Sbjct: 66  PLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120

Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
              +EG   L  L S +   +      R+    + +  + G+I  TG  SG +       
Sbjct: 121 AKDSEGLHDLFRL-SSLASYEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRLG 178

Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220
             + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S ++
Sbjct: 179 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 238

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVE 276
           +E+  +AHD L+ V    V   KD P         +Y+K+  +M ++F D PEA +NT+ 
Sbjct: 239 TEDQADAHDSLLCVG---VGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLL 295

Query: 277 IARRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
           +        +V   +  +P+F   E +     +E+ LR K   GL+ +            
Sbjct: 296 LTEMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------P 345

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
           ++  +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  
Sbjct: 346 KEVLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIA 405

Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           I+PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++A
Sbjct: 406 INPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKA 465

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLAD 505
           KAA++D  R L  P++  D++ K +P D     V L  I D S         FR+    +
Sbjct: 466 KAAVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADN 525

Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
           P V +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+
Sbjct: 526 PDVAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEE 585

Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            GL+K DFLGL+ L ++   +  + A RG+ VDL  I  DD  TY +L    TLG+FQL+
Sbjct: 586 MGLMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLD 645

Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----I 678
            + MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E ++ IHP     +
Sbjct: 646 GTAMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPVIPIHPELKEDL 705

Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
           D +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  +
Sbjct: 706 DEILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMRE 765

Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
           +G S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+
Sbjct: 766 HGYSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDD 825

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
            +K+  +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A  
Sbjct: 826 KDKMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRARE 885

Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
           +  P      F  +V     N+R++ESL+ AGA D  G+SR  L+            +++
Sbjct: 886 ENGPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKR 945

Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968
           N+ N  +++F     +   ++ +E+   ++    S +   E+ +LG Y S HPL
Sbjct: 946 NQANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999


>gi|328907421|gb|EGG27187.1| DNA polymerase III subunit alpha [Propionibacterium sp. P08]
          Length = 1190

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 330/1011 (32%), Positives = 528/1011 (52%), Gaps = 70/1011 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
           FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +        
Sbjct: 6   FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65

Query: 67  --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102
             ++PIIG +                       D D +    ++  G+        + + 
Sbjct: 66  PLVKPIIGIEAYVAPSTRTSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120

Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
               EG   L  L S +   +      R+    + +   +G+I  TG  SG +       
Sbjct: 121 AKDPEGLHNLFRL-SSLASYEGYYMKPRMDRELMSQY-PDGIIASTGCPSGEVQTRLRLG 178

Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220
             + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S ++
Sbjct: 179 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLRLAKKLDIPLLVTNDSHYV 238

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
           +E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ +  
Sbjct: 239 TEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDYPEACDNTLLLTE 298

Query: 280 RCSFILQV--HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
                 +V  H   +P+F   E +     +E+ LR K   GL+ +            ++ 
Sbjct: 299 MIGSYDEVFKHVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------PKEV 348

Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            +RL+ EL+VI  + FS YFLIV+D    A+   +PVGPGRGS AGS+ AY   I  I+P
Sbjct: 349 LERLETELSVIEPLGFSSYFLIVSDICSAARSMGVPVGPGRGSAAGSLVAYLTGIIAINP 408

Query: 398 LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
           L   LLFERFLNP+R++ PD D+DF   +RD+VI YV  KYG E  +Q+ TFG ++AKAA
Sbjct: 409 LEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTYKYGAEYTSQVNTFGKIKAKAA 468

Query: 458 LRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLADPSV 508
           ++D  R L  P+S  D++ K +P D     V L  I D S         FR+    +P V
Sbjct: 469 VKDANRILGYPFSLGDKITKAMPPDVMGKGVPLDKIFDPSHERYGEGQEFRQLVADNPDV 528

Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
            ++++ ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ GL
Sbjct: 529 AKVVDTARGLEGLIRGTGVHACAFILSSAPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGL 588

Query: 569 IKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
           +K DFLGL+ L ++   +  +   RG+ VDL  +  DD  TY +L    TLG+FQL+ + 
Sbjct: 589 MKMDFLGLRNLGIMDHCIKIIKDNRGIDVDLKDLALDDTATYEMLARGDTLGVFQLDGTA 648

Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPM 681
           MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP     +D +
Sbjct: 649 MRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEI 708

Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
           L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G 
Sbjct: 709 LAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGY 768

Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
           S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +K
Sbjct: 769 SDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDK 828

Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK- 860
           +  +  D R  +I ++PP VN   ++F      I + L A++ VG      I+ A  +  
Sbjct: 829 MAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREENG 888

Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
           P      F  RV     N+R++ESL+ AGA D  G+SR  L+   +        +++N+ 
Sbjct: 889 PAPDFFTFLDRVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAIYEQAVDAVIDIKRNQV 948

Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968
           N  +++F     +   ++ +E+   ++    S +   E+ +LG Y S HPL
Sbjct: 949 NGQDDLFGMGDDSQPSQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999


>gi|325956638|ref|YP_004292050.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC]
 gi|325333203|gb|ADZ07111.1| DNA polymerase III, alpha subunit [Lactobacillus acidophilus 30SC]
          Length = 1035

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 339/1031 (32%), Positives = 537/1031 (52%), Gaps = 58/1031 (5%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    + +++         A+ + D N  +  + F + A   GI+P++G 
Sbjct: 6    LQNLSSFTLLDSPTKVADLIKTAKEKGYSAVGLADINVTYGLVNFYEIAKKEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI-C 132
            Q+ ++          G         +++   T  GY  L+ L S + LL +  Q+ +I  
Sbjct: 66   QIRLN----------GLIDSTQKYDLLVFAKTNAGYHNLLRLSSAINLLTENGQNDKILT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +   + L+++   +   +   F  N  Q+    L   KK+  D  Y+ +   +  
Sbjct: 116  LKELTKYLEDLLVIIPANTRSELVYLFETNQ-QLGSDYLRDLKKIVPD-FYLGVYAAKNA 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD- 251
              Y +  V  L+   +LPLVA  +S +L   D      L A+  S    Q   P    D 
Sbjct: 174  QDYLDY-VRSLSKQFDLPLVAVEDSEYLRPRDQFLQKTLRAI-RSGQKMQDMVPLAKQDG 231

Query: 252  -HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             HY+ +  +M+  +   DL +A+ NT +IA +C+  +    P+LP++ + +        E
Sbjct: 232  SHYMVDAEQMLERYHRFDLDDAVNNTAKIAEKCNAEVIFQKPVLPKYHQNKF----PTSE 287

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L   A  GL+ R  Q  I       +Y++RL++EL +I +M F  YFLIV D I +  
Sbjct: 288  EYLHYLAQTGLQARFGQEKIPT-----EYQKRLNYELRIINQMGFDDYFLIVWDVINYCH 342

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS  GS+ +Y+L IT++DPL++ LLFERFLNP R  MPD D+D     RD
Sbjct: 343  RVKITTGPGRGSACGSLVSYSLRITEVDPLKYHLLFERFLNPARHEMPDIDLDIPDIHRD 402

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   +V++  + IP        
Sbjct: 403  TVIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEVNKWVRAIPFSKGKMTL 462

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             QA  +    R    A      L   +  LEGL RH S HAAG+VI D  ++ +  +   
Sbjct: 463  KQAYEESRELRLLVDATEENKLLFRTAMALEGLPRHYSIHAAGLVISDDSIAGISGLQAG 522

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
                +PVTQ   K++E  GL+K DFLGL+ LT+L   LD +  +GVK+D + IP +D +T
Sbjct: 523  PLG-IPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILDLVRSQGVKIDPNKIPLNDAKT 581

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T  IFQ ES G+R+ L  + PD  ED++A+ +LYRPGP+ NI  +  RKNG 
Sbjct: 582  LELFQQGKTDAIFQFESEGIRRVLRQLHPDNFEDLVAVNALYRPGPMQNIDTFVARKNGN 641

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++
Sbjct: 642  EPVRYPDPSLKQILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQE 701

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K +FI+G  KNG SK +   ++  + +FA+YGFN+SHA AY  I++  A++K HYP  F 
Sbjct: 702  KSKFIAGVVKNGHSKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFY 761

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             A   L      K +++   A++ NI+++ P +N   +++ + +N I   L AIKG+   
Sbjct: 762  TA--MLNSSTSAKAQQYVMQAQEANIRVLTPDINHSQLEYTLQNNNILVGLKAIKGLRVD 819

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A+ I  A+  KP+ SL DF  R+DSK L    +E+L+ AGA D    +R +LL +  +I
Sbjct: 820  FAKEI--AANTKPYKSLSDFLRRIDSKFLQIDAIEALIMAGAFDQIEDNRNELLANCKDI 877

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                Q          +NI   E     D   L+   +  +  + E E++VLGF  +  PL
Sbjct: 878  IANVQLT-------GQNISLSE--ILGDA-PLKPAEIPTNGEKAEMEEKVLGFATTTTPL 927

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRL------AAMVVSKQQKKTRKGSRIGWVTFSE 1022
                     + ++ Y +    +  N  +          ++S ++ +T+    + +  F++
Sbjct: 928  ---------VAVQKYAQKFNALPLNQFQFNESGIGVGKLMSLKRIRTKNDKTMAFAGFAD 978

Query: 1023 PAKEYEANFFP 1033
             + + E   FP
Sbjct: 979  SSSQQEVIIFP 989


>gi|313764330|gb|EFS35694.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL013PA1]
 gi|313815868|gb|EFS53582.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL059PA1]
 gi|314915320|gb|EFS79151.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL005PA4]
 gi|314920206|gb|EFS84037.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL050PA3]
 gi|314931729|gb|EFS95560.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL067PA1]
 gi|314955630|gb|EFT00032.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL027PA1]
 gi|314958026|gb|EFT02129.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL002PA1]
 gi|315098658|gb|EFT70634.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL059PA2]
 gi|315101339|gb|EFT73315.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL046PA1]
 gi|327450658|gb|EGE97312.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL087PA3]
 gi|327454004|gb|EGF00659.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL083PA2]
 gi|328753262|gb|EGF66878.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL025PA2]
 gi|328754076|gb|EGF67692.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL087PA1]
          Length = 1190

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 332/1014 (32%), Positives = 531/1014 (52%), Gaps = 76/1014 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
           FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +        
Sbjct: 6   FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65

Query: 67  --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102
             I+PIIG +                       D D +    ++  G+        + + 
Sbjct: 66  PLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120

Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
              +EG   L  L S +   +      R+    + +  + G+I  TG  SG +       
Sbjct: 121 AKDSEGLHDLFRL-SSLASYEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRLG 178

Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220
             + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S ++
Sbjct: 179 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 238

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVE 276
           +E+  +AHD L+ V    V   KD P         +Y+K+  +M ++F D PEA +NT+ 
Sbjct: 239 TEDQADAHDSLLCVG---VGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLL 295

Query: 277 IARRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
           +        +V   +  +P+F   E +     +E+ LR K   GL+ +            
Sbjct: 296 LTEMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------P 345

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
           ++  +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  
Sbjct: 346 KEVLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIA 405

Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           I+PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++A
Sbjct: 406 INPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKA 465

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLAD 505
           KAA++D  R L  P++  D++ K +P D     V L  I D S         FR+    +
Sbjct: 466 KAAVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADN 525

Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
           P V +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+
Sbjct: 526 PDVAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEE 585

Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            GL+K DFLGL+ L ++   +  + A RG+ VDL  I  DD  TY +L    TLG+FQL+
Sbjct: 586 MGLMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLD 645

Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----I 678
            + MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E ++ IHP     +
Sbjct: 646 GTAMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPVIPIHPELKEDL 705

Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
           D +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  +
Sbjct: 706 DEILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMRE 765

Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
           +G S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+
Sbjct: 766 HGYSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDD 825

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
            +K+  +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A  
Sbjct: 826 KDKMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRARE 885

Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
           +  P      F  +V     N+R++ESL+ AGA D  G+SR  L+            +++
Sbjct: 886 ENGPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKR 945

Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968
           N+ N  +++F     +   ++ +E+   ++    S +   E+ +LG Y S HPL
Sbjct: 946 NQANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999


>gi|238855206|ref|ZP_04645525.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 269-3]
 gi|260664570|ref|ZP_05865422.1| DNA polymerase III alpha-chain [Lactobacillus jensenii SJ-7A-US]
 gi|282932500|ref|ZP_06337925.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 208-1]
 gi|238832098|gb|EEQ24416.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 269-3]
 gi|260561635|gb|EEX27607.1| DNA polymerase III alpha-chain [Lactobacillus jensenii SJ-7A-US]
 gi|281303449|gb|EFA95626.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 208-1]
          Length = 1039

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 336/1036 (32%), Positives = 553/1036 (53%), Gaps = 64/1036 (6%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS+SLL+  + ++ ++         ++A+TD N  +  ++F   A  A + P++G 
Sbjct: 6    LQTLSSFSLLKSPILVDELVKDAVDKGYSSLALTDINVTYGLVDFYLAAKKANLNPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
             + ++      M +Q          ++ +    EGY+ L+ L S + L  D G +   + 
Sbjct: 66   TIRLN-----GMIDQAHRY-----DLISIAKNNEGYKNLLRLSSAINLKTDNGDERKVLT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNL--QR 188
            L  + +  ++ + ++    +  + R    N+ ++    L   +K+      LY+ +   +
Sbjct: 116  LKQVAKYLSDQIFIIPANVTSEL-RYLSENNEKLGSDYLRELQKIIPSSSDLYLGVYASK 174

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247
            ++ Y  Y    V  LA    LPL A  +  +L   D      L A+     +V       
Sbjct: 175  NQPYINY----VKALAAQFNLPLAAAEDVQYLQASDQFLVKTLRAIEQGQKLVDTSSLAL 230

Query: 248  VTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                HYL++  E+V+ +++  + EAL N  +IA  C   +    P LPR+ +    +   
Sbjct: 231  QKGSHYLRSSGELVAAYNENGIIEALHNAAKIADECKAEVIFTQPELPRYRQ----NFAP 286

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADFI 364
              +  LR     GLE R       KG +  + Y++RLD+EL +I +M F  YFLIV D I
Sbjct: 287  SSKIYLRQLVQKGLENRF------KGQNIPEIYQKRLDYELKIINQMGFDDYFLIVWDVI 340

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A   +I  GPGRGS AGS+ AY+L IT++DP++++LLFERFLNP R  MPD D+D   
Sbjct: 341  NYAHSVDITTGPGRGSAAGSLVAYSLAITEVDPIKYNLLFERFLNPARAQMPDIDLDIPD 400

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDE+I+Y+  KYG +  AQI+TFG+L AK ALRD  R   +   Q  +    IP    
Sbjct: 401  NRRDEIIKYMFEKYGMDHAAQILTFGTLAAKQALRDCARVFGLTTVQASKFTHAIPFSKV 460

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              ++L     +S+  +  +    +++LL   + +LEG+ RHAS HAAG+VI D+ ++Q+ 
Sbjct: 461  K-ITLSQAYQESKALQLLVNASELNKLLFRTAMRLEGIPRHASIHAAGLVISDKSIAQIA 519

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
             +       +PVTQ     +E+ GL+K DFLGL+ LT+L ++++ LA+ G+K+D   IP 
Sbjct: 520  GLQAGTLG-IPVTQQTKAHVEELGLLKIDFLGLRNLTILGETVELLAKDGIKLDPKQIPL 578

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D +T  L     T  +FQ ES G++  L+ + PD  ED++A+ +LYRPGPI NI  + N
Sbjct: 579  NDAKTLQLFQKGQTDAVFQFESQGIKNVLKRLHPDSFEDVVAVNALYRPGPIQNIDHFIN 638

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK GKE I      +  +LK T G+++YQEQVMQ AQ+++G+SL EAD+LRRAM KK ++
Sbjct: 639  RKQGKEAITYPDSSLAQLLKPTYGILVYQEQVMQTAQIMAGFSLGEADLLRRAMSKKKQD 698

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +D+++E+FI+GA KNG  +  A  ++  + +FA+YGFN+SHA AY+ I++  A++K HY
Sbjct: 699  LIDQEREKFITGAVKNGHPQATASKVYAYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHY 758

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P  F  A +     N  K  ++   A++  ++I+PP +N    D+ + + +I   L AIK
Sbjct: 759  PAAFFTALLNSVSANRIKAGEYITQAQEVGVKILPPDINQSQTDYSLLNGQIQVGLKAIK 818

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            G+     ++I  A+  K F SL DF  ++D+K L+ + + +++ AG  D    +R  LL 
Sbjct: 819  GIRVDFLKNI--ANLPKNFSSLADFLRKIDAKFLSEQTIAAMIKAGCFDKIDKNRKMLLL 876

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            +   I +  ++  +N T       +   G     I LE+    N++ +   E+ VLGF  
Sbjct: 877  NCKEIVENIKFTGQNET------LSEGLGG----IRLEQAPAPNANEKATMEEEVLGFST 926

Query: 964  SGHPLDVYKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQK----KTRKGSRIGW 1017
            +  P+ V         ++ Y E  +  T+    +    + V K  K    +T+KG  + +
Sbjct: 927  TKTPILV---------VQKYAERFNAQTLNSFTVNETGIAVGKLIKLKLIRTKKGDTMAF 977

Query: 1018 VTFSEPAKEYEANFFP 1033
             TF + + E E   FP
Sbjct: 978  STFRDASSEQEITIFP 993


>gi|315108557|gb|EFT80533.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL030PA2]
          Length = 1190

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 333/1014 (32%), Positives = 530/1014 (52%), Gaps = 76/1014 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
           FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +        
Sbjct: 6   FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65

Query: 67  --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102
             I+PIIG +                       D D +    ++  G+        + + 
Sbjct: 66  PLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120

Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
              +EG   L  L S +   +      R+    + +  + G+I  TG  SG +       
Sbjct: 121 AKDSEGLHNLFRL-SSLASYEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRLG 178

Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220
               A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S ++
Sbjct: 179 QFDEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 238

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVE 276
           +E+  +AHD L+ V    V   KD P         +Y+K+  +M ++F D PEA +NT+ 
Sbjct: 239 TEDQADAHDSLLCVG---VGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLL 295

Query: 277 IARRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
           +        +V   +  +P+F   E +     +E+ LR K   GL+ +            
Sbjct: 296 LTEMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------P 345

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
           ++  +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  
Sbjct: 346 KEVLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIA 405

Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           I+PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++A
Sbjct: 406 INPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKA 465

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLAD 505
           KAA++D  R L  P++  D++ K +P D     V L  I D S         FR+    +
Sbjct: 466 KAAVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADN 525

Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
           P V +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+
Sbjct: 526 PDVAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEE 585

Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            GL+K DFLGL+ L ++   +  + A RG+ VDL  I  DD  TY +L    TLG+FQL+
Sbjct: 586 MGLMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLD 645

Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----I 678
            + MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP     +
Sbjct: 646 GTAMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDL 705

Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
           D +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  +
Sbjct: 706 DEILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMRE 765

Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
           +G S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+
Sbjct: 766 HGYSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDD 825

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
            +K+  +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A  
Sbjct: 826 KDKMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRARE 885

Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
           +  P      F  +V     N+R++ESL+ AGA D  G+SR  L+            +++
Sbjct: 886 ENGPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKR 945

Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968
           N+ N  +++F     +   ++ +E+   ++    S +   E+ +LG Y S HPL
Sbjct: 946 NQANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999


>gi|296393842|ref|YP_003658726.1| DNA polymerase III subunit alpha [Segniliparus rotundus DSM 44985]
 gi|296180989|gb|ADG97895.1| DNA polymerase III, alpha subunit [Segniliparus rotundus DSM 44985]
          Length = 1179

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 349/1014 (34%), Positives = 550/1014 (54%), Gaps = 77/1014 (7%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S SFVHL  H+ YSLL+G   ++ +  + A  + PA+ +TD  N++ + EF + +   G+
Sbjct: 2   SDSFVHLHNHTEYSLLDGHAQVDAMFQEAARLKMPAVGMTDHGNMWGSAEFYKASKKHGV 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS--------------IVLLVSTAEGYQRLI 113
           +PIIG +  +            K  F   P               + ++   A+G + L+
Sbjct: 62  KPIIGIEAYLAPSSRFST----KREFWGEPGQRSDDVSGSGAYTHMTMVAKDAQGLRNLM 117

Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
           +L S      Q  +  R+    L E G  G+I  TG  SG +         + A +    
Sbjct: 118 KLSSLASFEGQLGKWPRMDAELLAEHG-RGVIATTGCPSGEVQTKLRLGQFEAACEAAGR 176

Query: 174 FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
           F+++FG +  Y+ L  H G D   R RE  +++L    ++P +ATN+  ++ +E    H+
Sbjct: 177 FQEIFGKENFYLELMDH-GIDIERRVRE-DLLRLGERLKIPPLATNDCHYVRQEHARGHE 234

Query: 230 VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQV 287
           +L+ V     +S   R +   D +YLK    M + + S++P A +NT+ IA +     +V
Sbjct: 235 ILLCVQTGKTMSDPGRFKFDGDGYYLKPADMMRAAWDSEVPGACDNTLLIAEQVGSYDEV 294

Query: 288 HA--PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                 +P F   + +D    + + LR++   GL+ R   G       + +YR R  FEL
Sbjct: 295 WEVRDRMPVFPVPDGED----QNSWLRHEVDRGLQRRFPDGV------SDEYRARAAFEL 344

Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
           +VI +  F  YFLIV D I +A+   I VGPGRGS AGS+ +YAL IT++DP++  LLFE
Sbjct: 345 DVIKQKGFPSYFLIVGDLIAYARSVGIRVGPGRGSAAGSLVSYALGITNLDPIKHGLLFE 404

Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
           RFLNP+R S PD DIDF   RR E+IRY   K+G +RVAQ+ITFG+++ KAAL+D  R L
Sbjct: 405 RFLNPERPSAPDIDIDFDDRRRGEMIRYASEKWGADRVAQVITFGTIKTKAALKDSARVL 464

Query: 466 --QMPYSQVDRLCKLIPNDPA-----HPVSLQAIADDSRFREAR------LADPSVDRLL 512
             Q  ++  DR+ K +P  PA      P+S     +  R++EA         DP V ++ 
Sbjct: 465 HGQPGFAIADRITKALP--PAIMAKDIPLSGITNPEHERYKEATEIRELIANDPDVAKIY 522

Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
           E +  LEGL R+A  HA  I++ + PL + +P+++  +    +T ++    E  GL+K D
Sbjct: 523 ETALSLEGLIRNAGVHACAIIMSNEPLIETIPLWKRPQDGAIITGWDYPSCEDIGLLKMD 582

Query: 573 FLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
           FLGL+ LT++  +++ + Q RGV++DL   P DD  T+ LL+   TLG+FQL+   MR  
Sbjct: 583 FLGLRNLTVIGDAIENIRQNRGVELDLENAPLDDPATFALLSRGETLGVFQLDGGPMRDL 642

Query: 632 LEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKET 685
           L  M+P    DI+A++SLYRPGP  ++    Y +RKNG+++I  IHP L +P+   L ET
Sbjct: 643 LRRMKPTGFGDIVAVLSLYRPGPMGVNAHNDYADRKNGRQQIKPIHPELEEPLKEILSET 702

Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
            G+I+YQEQ+M IAQ ++GYS+ +AD LR+AMGKK  E +  + E F  G   NG S+  
Sbjct: 703 YGLIVYQEQIMFIAQKVAGYSMGKADALRKAMGKKKLEVLQAEYEGFSQGMRGNGFSEAA 762

Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
              +++ +  FADY FNKSHAA YA+++Y T ++K +YP E++AA +T   D+ +K   +
Sbjct: 763 VKALWDTVLPFADYAFNKSHAACYALVAYWTGYLKANYPAEYMAALLTSVGDDKDKAAVY 822

Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDS 864
             D R+  I ++ P VN   VDF      I + L+ ++ VG      I+    ++  F S
Sbjct: 823 LADCRKMGITVLAPDVNKSRVDFAAVGEDILFGLSGVRNVGVGLVESIIRTRESEGAFTS 882

Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL----LQSLDNIQKYAQWVEKNRT 920
             D+ ++ D    N++ +ESL+ AG  D  G+ R  L     +++D +    +   + + 
Sbjct: 883 FSDYLAKADITACNKKAVESLIKAGGFDALGHPRKGLYLVHTEAVDAVMSTKKAEAQGQY 942

Query: 921 NKHENIFAHEKG------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
           +   + F  E G      TF  +I  E++ ++    +   E+ +LG Y SGHPL
Sbjct: 943 DLFSDFF--ESGSPELTATFEVQIPDEEWDMKQ---KLALEREMLGLYVSGHPL 991


>gi|326382578|ref|ZP_08204269.1| DNA polymerase III subunit alpha [Gordonia neofelifaecis NRRL
            B-59395]
 gi|326198697|gb|EGD55880.1| DNA polymerase III subunit alpha [Gordonia neofelifaecis NRRL
            B-59395]
          Length = 1178

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 357/1081 (33%), Positives = 566/1081 (52%), Gaps = 80/1081 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL  H+ YS+L+GA  ++ +  +       AI +TD  N+F A EF   A   GI
Sbjct: 2    SGSFVHLHNHTEYSMLDGAAKMSPLFSEAERLGMTAIGMTDHGNMFGASEFYNTAKKHGI 61

Query: 68   QPIIGCQLDIDMQD--NLKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIG +  I  +   N K    G         +       + ++   A G + L +L S
Sbjct: 62   KPIIGIEAYIAPESRFNTKRVLWGTRDQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +  Q  +  R+    + E   EG+I  TG  SG +           A +    ++++
Sbjct: 122  LASIEGQLGKWARMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHDAEALEAAGKWQEI 180

Query: 178  FG-DRLYVNLQRHRGYDRYRESQVVQLAYTHEL---PLVATNNSLFLSEEDYEAHDVLMA 233
            FG +  Y+ L  H G +  +  +   L    +L   PLV TN+  +++    E+H+ L+ 
Sbjct: 181  FGKENFYLELMEH-GLEIEQRVRSGLLDVGRKLGIKPLV-TNDCHYVTRGHAESHEALLC 238

Query: 234  VAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHA-- 289
            +     +S   R +   D +YLK+  EM +++ D+ P   ++T+EI  R     +V+   
Sbjct: 239  LQTGKTLSDPTRFKFDGDGYYLKSAEEMRALWDDVVPGGCDSTLEIGERVQSYEEVYTHH 298

Query: 290  ---PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               PI P       D     +E  L  + +AGL+ R        G    +Y  R ++EL+
Sbjct: 299  DRMPIFPV-----PDGFT--QETWLAREVMAGLDRRF------DGNPPGEYVTRAEYELS 345

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI +M F  YFL+V D I  A +  I VGPGRGS AGS+ AYAL IT+IDP+   LLFER
Sbjct: 346  VINQMGFPAYFLVVGDLIAHALEVGIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFER 405

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL- 465
            FLNP+R+SMPD DIDF   RR E+I Y   K+GH++VAQ+ITFG+++ KAA++D  R   
Sbjct: 406  FLNPERVSMPDIDIDFDDRRRGEMITYASQKWGHDKVAQVITFGTIKTKAAIKDSARVQF 465

Query: 466  -QMPYSQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSVDRL 511
             Q  ++  DR+ K +P              DP H    +  A+ +  R     DP V R+
Sbjct: 466  GQPGFAIADRITKALPPPIMAKDIPVWGITDPEH----ERYAEATEVRTLIETDPDVKRI 521

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
             + +  LEGL R+A  HA  +++   PL+  +P+++  +    +T ++    E  GL+K 
Sbjct: 522  YDTALGLEGLVRNAGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKM 581

Query: 572  DFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            DFLGL+ LT++  +++ +   RG+ +DL  +P +D ++Y LL    TLG+FQL+ S MR 
Sbjct: 582  DFLGLRNLTVIGDAIENIKTNRGIDLDLDKLPLEDPKSYELLARGDTLGVFQLDGSAMRD 641

Query: 631  ALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE---- 684
             L  M+P   EDI+A+++LYRPGP  ++    Y +RKNG++++  IHP ++  LKE    
Sbjct: 642  LLRRMEPTGFEDIVAVLALYRPGPMGVNAHNDYADRKNGRQEVKPIHPELEEPLKEILAE 701

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+I+YQEQ+MQIAQ ++GYSL +AD+LRRAMGKK KE +D+  + F  G   NG S+ 
Sbjct: 702  TFGLIVYQEQIMQIAQKVAGYSLGQADLLRRAMGKKKKEILDEAYDGFAEGMRGNGFSQE 761

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
                +++ +  FA Y FNKSHAA Y ++S+ TA++K +YP E++A  +T   D+ +K   
Sbjct: 762  AITALWDTVLPFAGYAFNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAI 821

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFD 863
            +  D R+  I ++PP VN    DF      I + LAAI+ VG+     I+ A  +K  + 
Sbjct: 822  YLADCRKMGITVLPPDVNASRADFAAVGEDIRFGLAAIRNVGSGVVSSIISAREEKGAYT 881

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNI--QKYAQWVEK 917
            +  D+  ++D +  +++V ESL+ AG  D  G+ R  L     +++D +   K A+ + +
Sbjct: 882  NFSDYLGKIDVQACSKKVTESLIKAGGFDSLGHDRKGLFLVHSEAIDAVISTKKAEAIGQ 941

Query: 918  -NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
             +      +        F+ K+  +++  ++   +   E+ +LG Y SGHPL   +  + 
Sbjct: 942  FDLFGGVGDDGGGASDVFAVKVPEDEWETKH---KLALERDMLGLYVSGHPLAGLEHAIA 998

Query: 977  KMGIKG----YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                       E SVA   G  I +  ++ S  ++  +KG     V   +     E  FF
Sbjct: 999  AQTDTSITSLLEGSVAD--GAQITIGGIISSVTRRVNKKGEPWAAVQLEDMVGGVEVYFF 1056

Query: 1033 P 1033
            P
Sbjct: 1057 P 1057


>gi|218440338|ref|YP_002378667.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 7424]
 gi|218173066|gb|ACK71799.1| DNA polymerase III, alpha subunit [Cyanothece sp. PCC 7424]
          Length = 876

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 319/818 (38%), Positives = 476/818 (58%), Gaps = 74/818 (9%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+      PAIA+TD   ++ A+E  +   +  I+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAIELIKICRSKNIKP 61

Query: 70  IIGCQL---DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL--VSRMYLLDQ 124
           IIG ++   + D+ D  K   +           V+L    +GY+ L++L  +S ++ +  
Sbjct: 62  IIGNEMYVINADLDDRSKKHRKYHQ--------VVLAKNNQGYKNLVKLTTISSLHGMHG 113

Query: 125 GKQSVRICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                R C++   L+E   EGLI+ +    G + +         A+K    +K LFGD  
Sbjct: 114 KGIFARPCINKELLKEY-HEGLIVTSACLGGEVPQNILAGKLDQAKKVAKWYKDLFGDDY 172

Query: 183 YVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           Y+ +Q H    DR     +V++A   ++ +VATN+S F+S  D EAHD L+ +    +++
Sbjct: 173 YLEIQDHGSPEDRIVNLGIVKIAKDLKIKIVATNDSHFISCYDVEAHDALLCIQTGKLIT 232

Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRC----SFILQVHAPI 291
           ++ R R +   YLK+  EM  +F D      + EA+ NT+E+A +       + +   P 
Sbjct: 233 EEKRMRYSGTEYLKSADEMRQLFRDHLEDEMIEEAINNTLEVADKVVQDYKILGEPRIPD 292

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            P       D   +E       K   GL  RL   ++ +   A  Y+QRL++EL +I +M
Sbjct: 293 YPVPPGHTADSYVEE-------KTWEGLLERLKCRSVIEIPPA--YKQRLEYELKMIQQM 343

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            FS YFL+V D+I++A+ + IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+
Sbjct: 344 GFSTYFLVVWDYIKYARDHEIPVGPGRGSAAGSLVAYALKITNIDPVHHGLLFERFLNPE 403

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R SMPD D DFC +RRDE+I+YV  KYG   VAQIITF  L +KA L+DV R L +PYS+
Sbjct: 404 RKSMPDIDTDFCIERRDEMIKYVTEKYGERNVAQIITFNRLTSKAVLKDVARVLDIPYSE 463

Query: 472 VDRLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHAST 527
            D++ KLIP     P  L+ +  D      F++   +DP V R ++++ ++EG  +    
Sbjct: 464 SDKMAKLIPVSRGKPTKLKVMISDETPEPEFKQKYDSDPQVKRWVDMAIRIEGTNKTFGV 523

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           HAAG+VI  +PL ++VP+ ++    + +TQ+ M+ +E  GL+K DFLGLK LT +QK+ +
Sbjct: 524 HAAGVVISSQPLDEIVPLQKNNDGAV-ITQYFMEDLESLGLLKMDFLGLKNLTTIQKTAE 582

Query: 588 FL-AQRGVKVDLSLIPF------------------DDHETYHLLTTKGTL-GIFQLESSG 627
            +   +   +D+  +P                   DD E  H L  +G L GIFQLESSG
Sbjct: 583 LVKVNKNEIIDVDELPLHERKALEIIAKGELKKLPDDVEKTHKLLERGDLEGIFQLESSG 642

Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
           MRQ +  ++P  IEDI ++++LYRPGP+D  ++  + +RK+GKE I   H L++P+LKET
Sbjct: 643 MRQIVRDLKPSGIEDISSILALYRPGPLDAGLIPKFIDRKHGKEPIKYEHQLLEPILKET 702

Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             V++YQEQ+M++AQ L+GYSL EAD+LRRAMGKK   EM K KE FI G++KNG+S+ I
Sbjct: 703 YAVLVYQEQIMKMAQDLAGYSLGEADLLRRAMGKKKISEMKKHKEIFIDGSTKNGVSQEI 762

Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           A N+F+ + KFA+Y            +SY+T  M   Y
Sbjct: 763 AENLFDQMVKFAEY-----------CLSYETQIMTVEY 789


>gi|298247514|ref|ZP_06971319.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963]
 gi|297550173|gb|EFH84039.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963]
          Length = 1173

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 337/1065 (31%), Positives = 571/1065 (53%), Gaps = 75/1065 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G   +  ++ +        +AITD   ++ ALEF +   A  I+P+
Sbjct: 7    FAHLHVHTEYSLLDGFSRIKTLVKQAKELGMKHLAITDHGAMYGALEFYKACKANDIRPV 66

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +  +    N+K   +G+  +     ++LL     GY+ L+++++            R
Sbjct: 67   LGVEAYLTEDMNVKAKKRGQRDYT---HLLLLAKNNTGYRNLMKMMTIANTEGMYANHAR 123

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            I  +   +   EG+I  +    G + +         A+  +  ++ + G    Y+ +Q H
Sbjct: 124  IDKNIFSQY-AEGIIATSSCLGGEVPQLLLEGKENEAKNIIRWYQDVLGRGNYYLEIQEH 182

Query: 190  RGYDRYR----ESQVVQLAYT-H---ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
             G+++      + ++ ++ Y  H   ++P++ TN+  ++ + D  AH+VL+ V   + +S
Sbjct: 183  HGHEKNGTPSPQDKLNKMLYGLHKELDVPMIVTNDLHYVQDTDAHAHEVLLCVQTGSTLS 242

Query: 242  QKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              +R     + Y L++  +M+ +F +L + L NTV +A +C      +   LP+      
Sbjct: 243  DPNRFAFDSNEYFLRSPQQMLDLFPELHDGLLNTVRLAEQCEVDPLAYKAQLPKV----- 297

Query: 301  DDIQKE---EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             DI  +    +  L  + + G+  R        G   +  +++LD+EL++I +  F  YF
Sbjct: 298  -DIPPQYGTPDEFLYAQCLEGIRYRF-------GELTEPLKRQLDYELSIIVQKGFVPYF 349

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+VAD+++WA++  I     RGS AGS+ A+ L IT++DPLR+ LLFERFLNP+R  MPD
Sbjct: 350  LVVADYVRWAREQGIRC-LARGSAAGSLVAFTLGITNVDPLRYQLLFERFLNPERDDMPD 408

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  DRR+EVIRY+  KYGHE VAQ++TF S+ AK +++DV R++       D++ +
Sbjct: 409  IDMDFPDDRREEVIRYLGEKYGHECVAQMVTFNSMAAKQSVKDVARSMGRQ-DLGDKISR 467

Query: 478  LIPNDPAHPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   ++LQ   +D R   +    D     LL+++ KLEG  R    HAAG+++ +
Sbjct: 468  LIPTGPK--ITLQGSLNDVRDLNDLYQHDGEAKDLLDMALKLEGSVRSTGVHAAGVLVAN 525

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595
             PL   VP+ +  R     TQ+    +E+ GLIK+D LGL  LT+L  ++ F+ + RG  
Sbjct: 526  EPLVNFVPLQK--REGRISTQYEHSHLEEIGLIKYDILGLSNLTILDNAVKFIKESRGED 583

Query: 596  VDLSLIPFDD----------HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            ++L  +P D            + Y LL    T G+FQLES+ MR+ ++ ++P CIEDI A
Sbjct: 584  INLEKLPLDPTGDPELDRKRQKAYELLAAGETTGVFQLESAKMREYIKMLKPTCIEDITA 643

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +V+LYRPGP+D+I  + + K+G++K+  + P +   L+E+ GVI+YQ+QV+ IA  L+G+
Sbjct: 644  MVALYRPGPMDSIPDFVDAKHGRKKVTYLDPRLSQWLEESYGVIVYQDQVLLIAVNLAGF 703

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            S  + +  R+A+ KKI  E++  K  F+ G  KNG+ + +A  +FE +  F  YGFNK+H
Sbjct: 704  SWGKVNKFRKALSKKIMHEVEGYKGDFLKGCVKNGVKQEVAETLFEQILPFGGYGFNKAH 763

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AA+YAV+S+ TA++K +Y  EF+AA+MT E  + +KI     + ++  ++++ P VN   
Sbjct: 764  AASYAVVSFYTAYLKANYTAEFMAATMTAEAADAKKIANAIAECKRMGVEVLGPDVNKSQ 823

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLES 884
              F + +  I + L AIKG+G      I+ A A+  PF SL DFC+RVD+  + +  +E+
Sbjct: 824  KGFAIENGGIRFGLLAIKGIGDGPIDGIIRARAEGGPFKSLGDFCTRVDAHAVGKGAIET 883

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE--- 941
            L+  GA+D    S  Q    L ++++  Q+ +  R+       A E+G  S    LE   
Sbjct: 884  LIKVGAMDSLMPSENQRHILLASVERAVQYGKSERS-------AKERGLVSLFGDLEEVG 936

Query: 942  ---KFSVENSSVR------FENEQRVLGFYFSGHPLDVYKPILRKMG----IKGYEESVA 988
               +FS+  ++         E E+ ++G Y + HPL     I  + G    I    E + 
Sbjct: 937  GSLEFSLSTNAQEIPRKQLLEWERELIGVYIAKHPLAYLSDIFVERGATHTIGQVTEELD 996

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            T     + +  M+   ++  T+KG  +  V   +         FP
Sbjct: 997  T---KKVTVGGMIKEARRITTKKGDDMCVVQLEDMYGTLGITIFP 1038


>gi|327330381|gb|EGE72130.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL097PA1]
          Length = 1190

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 332/1014 (32%), Positives = 530/1014 (52%), Gaps = 76/1014 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
           FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +        
Sbjct: 6   FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65

Query: 67  --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102
             I+PIIG +                       D D +    ++  G+        + + 
Sbjct: 66  PLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120

Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
              +EG   L  L S +   +      R+    + +  + G+I  TG  SG +       
Sbjct: 121 AKDSEGLHNLFRL-SSLASYEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRLG 178

Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220
             + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S ++
Sbjct: 179 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 238

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVE 276
           +E+  +AHD L+ V    V   KD P         +Y+K+  +M ++F D PEA +NT+ 
Sbjct: 239 TEDQADAHDSLLCVG---VGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLL 295

Query: 277 IARRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
           +        +V   +  +P+F   E +     +E+ LR K   GL+ +            
Sbjct: 296 LTEMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------P 345

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
           ++  +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  
Sbjct: 346 KEVLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIA 405

Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           I+PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++A
Sbjct: 406 INPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKA 465

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLAD 505
           KAA++D  R L  P++  D++ K +P D     V L  I D S         FR+    +
Sbjct: 466 KAAVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADN 525

Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
           P V +++  ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+
Sbjct: 526 PDVAKVVATAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEE 585

Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            GL+K DFLGL+ L ++   +  + A RG+ VDL  I  DD  TY +L    TLG+FQL+
Sbjct: 586 MGLMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLD 645

Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----I 678
            + MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP     +
Sbjct: 646 GTAMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDL 705

Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
           D +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  +
Sbjct: 706 DEILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMRE 765

Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
           +G S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+
Sbjct: 766 HGYSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDD 825

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
            +K+  +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A  
Sbjct: 826 KDKMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRARE 885

Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
           +  P      F  +V     N+R++ESL+ AGA D  G+SR  L+            +++
Sbjct: 886 ENGPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKR 945

Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968
           N+ N  +++F     +   ++ +E+   ++    S +   E+ +LG Y S HPL
Sbjct: 946 NQANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999


>gi|315038186|ref|YP_004031754.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL 1112]
 gi|312276319|gb|ADQ58959.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL 1112]
          Length = 1035

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 339/1031 (32%), Positives = 537/1031 (52%), Gaps = 58/1031 (5%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    + +++         A+ + D N  +  + F + A   GI+P++G 
Sbjct: 6    LQNLSSFTLLDSPTKVADLIKTAKEKGYSAVGLADINVTYGLVNFYEIAKKEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI-C 132
            Q+ ++          G         +++   T  GY  L+ L S + LL +  Q+ +I  
Sbjct: 66   QIRLN----------GLIDSTQKYDLLVFAKTNAGYHNLLRLSSAINLLTENGQNDKILT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +   + L+++   +   +   F  N  Q+    L   KK+  D  Y+ +   +  
Sbjct: 116  LKELTKYLEDLLVIIPANTRSELVYLFETNQ-QLGSDYLRDLKKIVPD-FYLGVYAAKNA 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD- 251
              Y +  V  L+   +LPLVA  +S +L   D      L A+  S    Q   P    D 
Sbjct: 174  QDYLDY-VRSLSKQFDLPLVAVEDSEYLRPRDQFLQKTLRAI-RSGQKMQDMVPLAKQDG 231

Query: 252  -HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             HY+ +  +M+  +   DL +A+ NT +IA +C+  +    P+LP++ + +        E
Sbjct: 232  SHYMVDAEQMLERYHRFDLDDAVNNTAKIAEKCNAEVIFQKPVLPKYHQNKF----PTSE 287

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L   A  GL+ R  Q  I       +Y++RL++EL +I +M F  YFLIV D I +  
Sbjct: 288  EYLHYLAQTGLQARFGQEKIPA-----EYQKRLNYELRIINQMGFDDYFLIVWDVINYCH 342

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS  GS+ +Y+L IT++DPL++ LLFERFLNP R  MPD D+D     RD
Sbjct: 343  RVKITTGPGRGSACGSLVSYSLRITEVDPLKYHLLFERFLNPARHEMPDIDLDIPDIHRD 402

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   +V++  + IP        
Sbjct: 403  TVIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEVNKWVRAIPFSKGKMTL 462

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             QA  +    R    A      L   +  LEGL RH S HAAG+VI D  ++ +  +   
Sbjct: 463  KQAYEESRELRLLVDATEENKLLFRTAMALEGLPRHYSIHAAGLVISDDSIAGISGLQAG 522

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
                +PVTQ   K++E  GL+K DFLGL+ LT+L   LD +  +GVK+D + IP +D +T
Sbjct: 523  PLG-IPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILDLVRSQGVKIDPNKIPLNDAKT 581

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T  IFQ ES G+R+ L  + PD  ED++A+ +LYRPGP+ NI  +  RKNGK
Sbjct: 582  LELFQQGKTDAIFQFESEGIRRVLRQLHPDNFEDLVAVNALYRPGPMQNIDTFVARKNGK 641

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E +    P +  +L+ T G+++YQEQVMQ AQ+L+ +SL EAD+LRRAM KK ++ ++++
Sbjct: 642  EPVRYPDPSLKQILQPTYGILVYQEQVMQTAQILARFSLGEADILRRAMSKKKQDVIEQE 701

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K +FI+G  KNG SK +   ++  + +FA+YGFN+SHA AY  I++  A++K HYP  F 
Sbjct: 702  KSKFIAGVVKNGHSKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFY 761

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             A   L      K +++   A++ NI+++ P +N   +++ + +N I   L AIKG+   
Sbjct: 762  TA--MLNSSTSAKAQQYVMQAQEANIRVLTPDINHSQLEYTLQNNNILVGLKAIKGLRVD 819

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A+ I  A+  KP+ SL DF  R+DSK L    +E+L+ AGA D    +R +LL +  +I
Sbjct: 820  FAKEI--AANTKPYKSLSDFLRRIDSKFLQIDAIEALIMAGAFDQIEDNRNELLANCKDI 877

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                Q          +NI   E     D   L+   +  +  + E E++VLGF  +  PL
Sbjct: 878  IANVQLT-------GQNISLSE--ILGDA-PLKPAEIPTNGEKAEMEEKVLGFATTTTPL 927

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRL------AAMVVSKQQKKTRKGSRIGWVTFSE 1022
                     + ++ Y +    +  N  +          ++S ++ +T+    + +  F++
Sbjct: 928  ---------VAVQKYAQKFNALPLNQFQFNESGIGVGKLMSLKRIRTKNDKTMAFAGFAD 978

Query: 1023 PAKEYEANFFP 1033
             + + E   FP
Sbjct: 979  SSSQQEVIIFP 989


>gi|242373992|ref|ZP_04819566.1| DNA polymerase III, alpha subunit [Staphylococcus epidermidis
            M23864:W1]
 gi|242348346|gb|EES39948.1| DNA polymerase III, alpha subunit [Staphylococcus epidermidis
            M23864:W1]
          Length = 1069

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 337/1026 (32%), Positives = 539/1026 (52%), Gaps = 85/1026 (8%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL +H++Y LL  +L + ++++K   +   A+AITDT+ L+   +F     AA I PI G
Sbjct: 4    HLNIHTAYDLLNASLRIEDVINKAKNEGYTALAITDTHVLYGFPKFYDACIAADIHPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              L         +   G     TV    +L    EG + L +L S + +    K+   + 
Sbjct: 64   MTL---------ILTDGLYKVETV----VLAQNNEGLKALYQLSSAIKM----KEKEEVP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L WL+      +I+     S  +     FN                   +Y+N       
Sbjct: 107  LEWLKRYDDNLIIIFKDVESTHLQILEAFNDHT---------------HVYMNHTSDDII 151

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
            DR +               V   ++ +L+ ED +    L A+  ++ +   +  +   +H
Sbjct: 152  DRKK---------------VWLQSARYLNREDADTISALQAIRDNSKLDLINESKDFGEH 196

Query: 253  YLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            +  +++E+ +I  D+  E ++NT  I   C   L  H  +LP+F+    + + KE     
Sbjct: 197  F-PDQNELKNISDDVDEEVIKNTQTIVDLCQAELVYHQSLLPQFVTPNGE-VAKEY---- 250

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                   L   L         H   Y +RL  E  +I  M F  YFLIV+D I +AK ++
Sbjct: 251  -------LWSVLIDKLNEWNLHNDQYLERLKHEYEIITNMGFEDYFLIVSDLIHYAKTHD 303

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 304  VMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVI 363

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     ++L  
Sbjct: 364  QYVQDKYGDLHVSGIVTFGHLLARAVGRDVGRIMGFDETTLNEISKLIPHKLG--ITLDE 421

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                  F+     +   +   ++S+KLEGL RH STHAAGI+I D+PL +  P+   +  
Sbjct: 422  AYQQDNFKAFVHRNHRNELWFDMSKKLEGLPRHTSTHAAGIIINDQPLYKFAPL--TLGD 479

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  IPFDD + + 
Sbjct: 480  TGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIVTQVKKDLNIDIDVETIPFDDRKVFK 539

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++   K
Sbjct: 540  LLSQGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSK 599

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++
Sbjct: 600  VEYLHPDLEPILKNTYGVIIYQEQIMQIASKFANFSYGEADILRRAMSKKNRAVLESERQ 659

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA  NG  + ++  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K +YP  F A 
Sbjct: 660  HFVNGAKDNGYDEQMSKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVYYPNYFYAN 719

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K      +A+   I I+PP++N     +K     IY SL  IKGVG  + 
Sbjct: 720  ILSNVIGSEKKTANMIDEAKHQKINILPPNINESHWFYKATSQGIYLSLGTIKGVGYQSV 779

Query: 851  RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+ E   +  F    DF  R+  +   R++LE+L+  GA D F  +R  LLQ++D + 
Sbjct: 780  KLIVDERYNNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDNFDKNRATLLQAIDQVL 839

Query: 910  KYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
                 VE++     + +F     K  + DK  L    + N       E+  LGFY S HP
Sbjct: 840  DTTSDVEQD-----DMLFDILTPKQVYEDKEELPDKLLSNY------EKEYLGFYISKHP 888

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            ++  K   +K  +  Y+ S A    N   +     + +Q +T+ G  + +VT ++     
Sbjct: 889  VE--KEFEKKQYLGIYKLSNAQ---NFQPILVQFDTIKQIRTKNGQNMAFVTLNDGMTLM 943

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 944  DGVIFP 949


>gi|302525308|ref|ZP_07277650.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4]
 gi|302434203|gb|EFL06019.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4]
          Length = 1195

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 370/1082 (34%), Positives = 566/1082 (52%), Gaps = 73/1082 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA  +  +  + A    PA+ +TD  N++   EF Q +   GI+P
Sbjct: 5    SFVHLHVHTEYSMLDGAAKIGPLFAEAARLGMPAVGMTDHGNMYGGDEFFQTSKKHGIKP 64

Query: 70   IIGCQLDIDMQDNL--------KMTNQGKTPFP---------TVPSIVLLVSTAEGYQRL 112
            IIG +  +  +           + + +G   F              + ++   A G + L
Sbjct: 65   IIGIEAYVAPESRFHKKPVFWGQASQRGSDEFGEGGDVSGGGAYTHMTMVAGNATGLRNL 124

Query: 113  IELVSRMYLLDQGK-QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
             +L S   +  QG  +  R+    + E   EG+I  TG  SG +         + A +  
Sbjct: 125  FKLSSLASI--QGYYRKPRMDRELIAE-NAEGIIATTGCPSGEVQTRLRLGQREAAIQAA 181

Query: 172  LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              +K +FG    Y+ L  H    +R     ++++    +LP +ATN+S +++++  + H 
Sbjct: 182  SDYKDIFGAGNFYLELMDHGLPIERSVREGLLEIGKLLDLPPLATNDSHYVTKDQADTHS 241

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHY-LKNRSEMVSIFS-DLPEALENTVEIARRCSFILQV 287
             L+ V     ++   R +   D Y LK+  EM   +  ++P A +NT+ IA R      V
Sbjct: 242  ALLCVQAGKTLNDPTRFKFDGDGYFLKSAQEMREYWDKEVPGAADNTLLIAERVESYEDV 301

Query: 288  --HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
              H   +P F   E       E   LR++   GL+ R   G I  GY      +R D+EL
Sbjct: 302  YAHKDRMPVFDVPEG----HTEATWLRHQVAEGLKWRFPDG-IPDGYE-----ERCDYEL 351

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            NVI    F  YFLIVAD IQ A++  I VGPGRGS AG++ AYAL IT++DP+   LLFE
Sbjct: 352  NVIEGKGFPAYFLIVADLIQHAREVGILVGPGRGSAAGALVAYALGITNLDPIPQKLLFE 411

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+RMSMPD DIDF   RR E+IRY  +KYG +RVAQ+ITFG+++ KAA++D  R  
Sbjct: 412  RFLNPERMSMPDIDIDFDDRRRGEMIRYATDKYGADRVAQVITFGTIKTKAAIKDSARVH 471

Query: 466  --QMPYSQVDRLCKLIPND-PAHPVSLQAIADDSRFREARLA--------DPSVDRLLEI 514
              Q  YS  D++ K +P    A  + L  I D    R A  A        D     + E 
Sbjct: 472  FGQPGYSIADKISKALPPPIMAKDIPLSGIVDSKHERYAEAAEVRTLVETDEECKTIFET 531

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++ LEGL R+A  HA  +++   PL+  +P+++     + +T ++    E  GL+K DFL
Sbjct: 532  ARGLEGLIRNAGVHACAVIMSSEPLTDAIPVWQRDDGSI-ITGWDYPSCEAIGLLKMDFL 590

Query: 575  GLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT++  +L+ + A RG ++DL  + FDD E Y LL    TLG+FQL+   MR  L 
Sbjct: 591  GLRNLTVIGDALENIKANRGEEIDLDRLGFDDPEAYKLLGRGDTLGVFQLDGGAMRDLLR 650

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQG 687
             M P   EDIIA+++LYRPGP+       Y +RKN +++I  IHP L +P+   L ET G
Sbjct: 651  RMLPTGFEDIIAVLALYRPGPMGMNAHNDYADRKNNRQQIKPIHPQLEEPLREILSETYG 710

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS-----KNGIS 742
            +I+YQEQ+MQIAQ ++GY++  AD LRRAMGKK KE ++K+ E F  G       + G S
Sbjct: 711  LIVYQEQIMQIAQKVAGYTMGRADTLRRAMGKKKKEVLEKEYEGFEEGMKSSPLVEGGFS 770

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                  +++ +  FA Y FNKSHAAAY +I+Y TA++K +Y  E++AA +T   DN +K 
Sbjct: 771  PEAVKALWDTILPFAGYAFNKSHAAAYGLIAYWTAYLKANYTAEYMAALLTSVGDNKDKS 830

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-P 861
              +  + R+  I+++PP VN   + F    N I + L A++ VG      I++   +K  
Sbjct: 831  AIYLSECRRLGIKVLPPDVNESALRFAAVGNDIRFGLGAVRNVGANVVESIIKTREEKGK 890

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + S  DF  + +    N+RV+ESL+ AGA D  G++R+ ++Q  ++  +    +++    
Sbjct: 891  YSSFTDFLDKSELVACNKRVIESLIKAGAFDSMGHTRLSMIQVHEDAVEAVVPLKRQEAM 950

Query: 922  KHENIF--------AHEKGTFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVY 971
               ++F        A E    S  +   KF  E    +     E+ +LG Y S HPLD  
Sbjct: 951  GQFDLFGSFGGGDDAAEAAPSSSPLAHLKFGEEEYPRKQLLAYEREMLGLYVSAHPLDGA 1010

Query: 972  KPILRKMGIKGYEESVA-TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            + ILRK   K     +A   +   + ++ ++ S +++  +KG      T  +     E  
Sbjct: 1011 ERILRKHAPKPIAALLADPPKEGEVVISGLLTSLERRVNKKGEPWAICTVEDMDAAIEVL 1070

Query: 1031 FF 1032
            FF
Sbjct: 1071 FF 1072


>gi|50842630|ref|YP_055857.1| DNA polymerase III subunit alpha [Propionibacterium acnes KPA171202]
 gi|50840232|gb|AAT82899.1| DNA polymerase III alpha subunit [Propionibacterium acnes KPA171202]
          Length = 1220

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 330/1014 (32%), Positives = 530/1014 (52%), Gaps = 76/1014 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +        
Sbjct: 36   FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 95

Query: 67   --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102
              ++PIIG +                       D D +    ++  G+        + + 
Sbjct: 96   PLVKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 150

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
               +EG   L  L S +   +      R+    + +    G+I  TG  SG +       
Sbjct: 151  AKDSEGLHNLFRL-SSLASYEGYYMKPRMDRELMGQY-PGGIIASTGCPSGEVQTRLRLG 208

Query: 163  SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220
              + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S ++
Sbjct: 209  QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 268

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVE 276
            +E+  +AHD L+ V    V   KD P         +Y+K+  +M ++F D PEA +NT+ 
Sbjct: 269  TEDQADAHDSLLCVG---VGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLL 325

Query: 277  IARRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
            +        +V   +  +P+F   E +     +E+ LR K   GL+ +            
Sbjct: 326  LTEMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------P 375

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
            ++  +RL+ EL+VI  + F+ YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  
Sbjct: 376  KEVLERLETELSVIEPLGFASYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIA 435

Query: 395  IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
            I+PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++A
Sbjct: 436  INPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKA 495

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLAD 505
            KAA++D  R L  P++  D++ K +P D     V L  I D S         FR+    +
Sbjct: 496  KAAVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADN 555

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
            P V +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+
Sbjct: 556  PDVAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEE 615

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GL+K DFLGL+ L ++   +  + A RG+ VDL  I  DD  TY +L    TLG+FQL+
Sbjct: 616  MGLMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLD 675

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----I 678
             + MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP     +
Sbjct: 676  GTAMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDL 735

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            D +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  +
Sbjct: 736  DEILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMRE 795

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            +G S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+
Sbjct: 796  HGYSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDD 855

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
             +K+  +  D R  +I ++PP VN   ++F      I + L A++ VG      I+ A  
Sbjct: 856  KDKMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRARE 915

Query: 859  DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
            +  P      F  +V     N+R++ESL+ AGA D  G+SR  L+            +++
Sbjct: 916  ENGPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKR 975

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968
            N+ N  +++F     +   ++ +E+   ++    S +   E+ +LG Y S HPL
Sbjct: 976  NQANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 1029


>gi|315092840|gb|EFT64816.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL060PA1]
          Length = 1190

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 330/1014 (32%), Positives = 530/1014 (52%), Gaps = 76/1014 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
           FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +        
Sbjct: 6   FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65

Query: 67  --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102
             ++PIIG +                       D D +    ++  G+        + + 
Sbjct: 66  PLVKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120

Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
              +EG   L  L S +   +      R+    + +    G+I  TG  SG +       
Sbjct: 121 AKDSEGLHNLFRL-SSLASYEGYYMKPRMDRELMGQY-PGGIIASTGCPSGEVQTRLRLG 178

Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220
             + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S ++
Sbjct: 179 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 238

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVE 276
           +E+  +AHD L+ V    V   KD P         +Y+K+  +M ++F D PEA +NT+ 
Sbjct: 239 TEDQADAHDSLLCVG---VGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLL 295

Query: 277 IARRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
           +        +V   +  +P+F   E +     +E+ LR K   GL+ +            
Sbjct: 296 LTEMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------P 345

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
           ++  +RL+ EL+VI  + F+ YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  
Sbjct: 346 KEVLERLETELSVIEPLGFASYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIA 405

Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           I+PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++A
Sbjct: 406 INPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKA 465

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLAD 505
           KAA++D  R L  P++  D++ K +P D     V L  I D S         FR+    +
Sbjct: 466 KAAVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADN 525

Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
           P V +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+
Sbjct: 526 PDVAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEE 585

Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            GL+K DFLGL+ L ++   +  + A RG+ VDL  I  DD  TY +L    TLG+FQL+
Sbjct: 586 MGLMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLD 645

Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----I 678
            + MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP     +
Sbjct: 646 GTAMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDL 705

Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
           D +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  +
Sbjct: 706 DEILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMRE 765

Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
           +G S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+
Sbjct: 766 HGYSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDD 825

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
            +K+  +  D R  +I ++PP VN   ++F      I + L A++ VG      I+ A  
Sbjct: 826 KDKMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRARE 885

Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
           +  P      F  +V     N+R++ESL+ AGA D  G+SR  L+            +++
Sbjct: 886 ENGPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKR 945

Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968
           N+ N  +++F     +   ++ +E+   ++    S +   E+ +LG Y S HPL
Sbjct: 946 NQANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999


>gi|314923593|gb|EFS87424.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL001PA1]
 gi|314966638|gb|EFT10737.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL082PA2]
 gi|314981367|gb|EFT25461.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL110PA3]
 gi|315092033|gb|EFT64009.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL110PA4]
 gi|315103640|gb|EFT75616.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL050PA2]
 gi|315105689|gb|EFT77665.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL030PA1]
 gi|327327462|gb|EGE69238.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL103PA1]
          Length = 1190

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 330/1014 (32%), Positives = 530/1014 (52%), Gaps = 76/1014 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
           FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +        
Sbjct: 6   FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65

Query: 67  --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102
             ++PIIG +                       D D +    ++  G+        + + 
Sbjct: 66  PLVKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120

Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
              +EG   L  L S +   +      R+    + +    G+I  TG  SG +       
Sbjct: 121 AKDSEGLHNLFRL-SSLASYEGYYMKPRMDRELMGQY-PGGIIASTGCPSGEVQTRLRLG 178

Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220
             + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S ++
Sbjct: 179 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 238

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVE 276
           +E+  +AHD L+ V    V   KD P         +Y+K+  +M ++F D PEA +NT+ 
Sbjct: 239 TEDQADAHDSLLCVG---VGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLL 295

Query: 277 IARRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
           +        +V   +  +P+F   E +     +E+ LR K   GL+ +            
Sbjct: 296 LTEMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------P 345

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
           ++  +RL+ EL+VI  + F+ YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  
Sbjct: 346 KEVLERLETELSVIEPLGFASYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIA 405

Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           I+PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++A
Sbjct: 406 INPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKA 465

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLAD 505
           KAA++D  R L  P++  D++ K +P D     V L  I D S         FR+    +
Sbjct: 466 KAAVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADN 525

Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
           P V +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+
Sbjct: 526 PDVAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEE 585

Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            GL+K DFLGL+ L ++   +  + A RG+ VDL  I  DD  TY +L    TLG+FQL+
Sbjct: 586 MGLMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLD 645

Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----I 678
            + MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP     +
Sbjct: 646 GTAMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDL 705

Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
           D +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  +
Sbjct: 706 DEILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMRE 765

Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
           +G S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+
Sbjct: 766 HGYSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDD 825

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
            +K+  +  D R  +I ++PP VN   ++F      I + L A++ VG      I+ A  
Sbjct: 826 KDKMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRARE 885

Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
           +  P      F  +V     N+R++ESL+ AGA D  G+SR  L+            +++
Sbjct: 886 ENGPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKR 945

Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968
           N+ N  +++F     +   ++ +E+   ++    S +   E+ +LG Y S HPL
Sbjct: 946 NQANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999


>gi|300784068|ref|YP_003764359.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32]
 gi|299793582|gb|ADJ43957.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32]
          Length = 1195

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 361/1084 (33%), Positives = 569/1084 (52%), Gaps = 77/1084 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA  +  +  + A    PA+ +TD  N++   EF Q++   G++P
Sbjct: 5    SFVHLHVHTEYSMLDGAAKIAPLFAEAARLGMPAVGMTDHGNMYGGDEFYQQSKKHGLKP 64

Query: 70   IIGCQLDID------------MQDNLKMTNQ-GK----TPFPTVPSIVLLVSTAEGYQRL 112
            IIG +  I              Q N + +++ G+    +       + +L   A G + L
Sbjct: 65   IIGIEAYIAPESRFHKKPVFWGQSNQRGSDELGEGGDVSGAGAYTHMTMLAQNATGLRNL 124

Query: 113  IELVSRMYLLDQGK-QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
             +L S   +  QG  +  R+    + E    G+I  TG  SG +         + A +  
Sbjct: 125  FKLSSLASM--QGYYRKPRMDRELIAE-NHSGIIATTGCPSGEVQTRLRLGQKEAAIQAA 181

Query: 172  LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              +K +FG D  ++ L  H    +R     ++++    +L  +ATN+S +++++  + H 
Sbjct: 182  SDYKDIFGADNFFLELMDHGLPIERSVREGLLEVGRLLDLKPIATNDSHYVTKDQADTHS 241

Query: 230  VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQV 287
             L+ V     ++   R +   D +YLK+ +EM   +  ++P A + T+ IA R      V
Sbjct: 242  ALLCVQAGKTLNDPTRFKFDGDGYYLKSAAEMREYWDKEVPGAADTTLMIAERVESYEDV 301

Query: 288  --HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
              H   LP F   E  D    +   LR +   GL+ R   G +   Y    Y +R++ EL
Sbjct: 302  YSHKDRLPFFEVPEGYD----QGGWLREEVQRGLKWRFPDG-VPDEY----YNERIEIEL 352

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +VI    F  YFLIVAD I +A+K  I VGPGRGS AGS+ AY L IT++DP+   LLFE
Sbjct: 353  DVIIGKGFPAYFLIVADLISYARKVGIRVGPGRGSAAGSLVAYVLGITNLDPIPQKLLFE 412

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+SMPD DIDF   RR E+IRY  +KYG ++VAQ+ITFG+++ KAA++D  R  
Sbjct: 413  RFLNPERVSMPDIDIDFDDRRRGEMIRYATDKYGSDKVAQVITFGTIKTKAAIKDSARVH 472

Query: 466  --QMPYSQVDRLCKLIPND-PAHPVSLQAIADDSRFREARLA--------DPSVDRLLEI 514
              Q  Y+  D++ K +P    A  + L  I D+   R    A        D     + E 
Sbjct: 473  FGQPGYAIADKISKALPPPIMAKDIPLSGIVDNKHERYGEAAEVRALVETDDECKTIFET 532

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++ LEGL R+A  HA  +++   PL+  +P+++     + +T ++    E  GL+K DFL
Sbjct: 533  ARGLEGLIRNAGVHACAVIMSCDPLTDAIPLWQRDDGSI-ITGWDYPSCEAIGLLKMDFL 591

Query: 575  GLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT++  ++D + A RGV VDL  +  DD ETY LL    TLG+FQL+   MR  L 
Sbjct: 592  GLRNLTVIGDAIDNIKANRGVDVDLDTLGVDDPETYKLLARGDTLGVFQLDGGPMRDLLR 651

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE----TQG 687
             M+P   +DI+A+ +LYRPGP+       Y +RKN ++K+  IHP +D  L+E    T G
Sbjct: 652  RMEPTVFDDIVAVGALYRPGPMGMNAHNDYADRKNNRQKVKPIHPELDEPLREILADTYG 711

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN-----GIS 742
            +I+YQEQ+M I Q ++GY++  ADVLRRAMGKK KE +DK+ E F +G   +     G S
Sbjct: 712  LIVYQEQIMHIGQKVAGYTMGRADVLRRAMGKKKKEVLDKEYEGFEAGMRASDLRPGGFS 771

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                  +++ +  FA Y FNKSHAAAY +ISY TA++K ++  E++AA +T   DN +K 
Sbjct: 772  PEAIKALWDTILPFAGYAFNKSHAAAYGLISYWTAYLKANFRAEYMAALLTSVGDNKDKS 831

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-P 861
              +  + R+  I+++PP VN   + F    + I + L A++ VG      I++   +K  
Sbjct: 832  AVYLSECRRLGIKVLPPDVNESALRFAAVGDDIRFGLGAVRNVGANVVESIIKTREEKGK 891

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + S  DF  + +    N+RV+ESL+ AG  D  G++R+ ++Q  ++  +    +++    
Sbjct: 892  YASFTDFLDKSELVACNKRVIESLIKAGGFDSLGHTRLSMIQVHEDAVEAVVPLKRQEAM 951

Query: 922  KHENIFA-----HEKGTFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPI 974
               ++F       E    S  +   KF  E    +     E+ +LG Y S HPLD  + I
Sbjct: 952  GQFDLFGFGGDEGEAAPSSSPLAHLKFGEEEYPRKQLLAYEREMLGLYVSAHPLDGAERI 1011

Query: 975  LRKMGIKGYEESVATI-----RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            LRK   K     +A+I     +   + ++ ++ S +++  +KG      T  +     E 
Sbjct: 1012 LRKHAPK----PIASILNDPPKEGELVISGLITSLERRVNKKGEPWAICTVEDMDASLEV 1067

Query: 1030 NFFP 1033
             FFP
Sbjct: 1068 LFFP 1071


>gi|282853897|ref|ZP_06263234.1| DNA polymerase III subunit alpha [Propionibacterium acnes J139]
 gi|282583350|gb|EFB88730.1| DNA polymerase III subunit alpha [Propionibacterium acnes J139]
          Length = 1190

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 328/1011 (32%), Positives = 529/1011 (52%), Gaps = 70/1011 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
           FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +        
Sbjct: 6   FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65

Query: 67  --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102
             ++PIIG +                       D D +    ++  G+        + + 
Sbjct: 66  PLVKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120

Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
              +EG   L  L S +   +      R+    + +    G+I  TG  SG +       
Sbjct: 121 AKDSEGLHNLFRL-SSLASYEGYYMKPRMDRELMGQY-PGGIIASTGCPSGEVQTRLRLG 178

Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220
             + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S ++
Sbjct: 179 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 238

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
           +E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ +  
Sbjct: 239 TEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLTE 298

Query: 280 RCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
                 +V   +  +P+F   E +     +E+ LR K   GL+ +            ++ 
Sbjct: 299 MIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------PKEV 348

Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            +RL+ EL+VI  + F+ YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+P
Sbjct: 349 LERLETELSVIEPLGFASYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINP 408

Query: 398 LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
           L   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKAA
Sbjct: 409 LEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAA 468

Query: 458 LRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLADPSV 508
           ++D  R L  P++  D++ K +P D     V L  I D S         FR+    +P V
Sbjct: 469 VKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDV 528

Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
            +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ GL
Sbjct: 529 AKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGL 588

Query: 569 IKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
           +K DFLGL+ L ++   +  + A RG+ VDL  I  DD  TY +L    TLG+FQL+ + 
Sbjct: 589 MKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTA 648

Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPM 681
           MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP     +D +
Sbjct: 649 MRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEI 708

Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
           L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G 
Sbjct: 709 LAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGY 768

Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
           S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +K
Sbjct: 769 SDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDK 828

Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK- 860
           +  +  D R  +I ++PP VN   ++F      I + L A++ VG      I+ A  +  
Sbjct: 829 MAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREENG 888

Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
           P      F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+ 
Sbjct: 889 PAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDFMGHSRRGLMAVYGQAVDAVIDIKRNQA 948

Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968
           N  +++F     +   ++ +E+   ++    S +   E+ +LG Y S HPL
Sbjct: 949 NGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999


>gi|145224220|ref|YP_001134898.1| DNA polymerase III subunit alpha [Mycobacterium gilvum PYR-GCK]
 gi|315444554|ref|YP_004077433.1| DNA polymerase III subunit alpha [Mycobacterium sp. Spyr1]
 gi|145216706|gb|ABP46110.1| DNA polymerase III, alpha subunit [Mycobacterium gilvum PYR-GCK]
 gi|315262857|gb|ADT99598.1| DNA polymerase III, alpha subunit [Mycobacterium sp. Spyr1]
          Length = 1183

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 346/1007 (34%), Positives = 543/1007 (53%), Gaps = 58/1007 (5%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S SFVHL  H+ YS+L+GA  +  +L +    + PAI +TD  N+F A EF   A  AGI
Sbjct: 2   SGSFVHLHNHTEYSMLDGAAKVKPMLAEAQRLEMPAIGMTDHGNMFGASEFYNAATDAGI 61

Query: 68  QPIIGCQLDID----------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
           +PIIG +  I           +  +    +   +   +   + ++   A G + L +L S
Sbjct: 62  KPIIGIEAYIAPASRFDTKRVLWGDPGQKSDDVSGSGSYTHMTMVAENATGLRNLFKLSS 121

Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
                 Q  +  R+    + E   EG+I  TG  SG +         + A +    ++++
Sbjct: 122 LASFEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHDREALEAAARWREI 180

Query: 178 FG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           FG +  ++ L  H G D   R RE  ++++     +P +ATN+  +++ +  + H+ L+ 
Sbjct: 181 FGPENFFLELMDH-GLDIERRVREG-LLEIGQKLGIPPLATNDCHYVTRDASQNHEALLC 238

Query: 234 VAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPI 291
           +     +S  +R +   D +YLK+ +EM +++   +P A ++T+ IA R      V AP 
Sbjct: 239 IQTGKTLSDPNRFKFDGDGYYLKSAAEMRALWDGQVPGACDSTLLIAERVQPYTDVWAPK 298

Query: 292 --LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
             +P F   E  D    + + L ++ +AGLE R +  A A G    +Y +R D+E+ VI 
Sbjct: 299 DRMPVFPVPEGHD----QGSWLTHEVMAGLERRFS--AAAGGQVPPEYIERADYEIKVIC 352

Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
              F  YFLIVAD I +AK   I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLN
Sbjct: 353 DKGFPAYFLIVADLINYAKSVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLN 412

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467
           P+R S PD DIDF   RR E++RY  NK+G +RVAQ+ITFG+++ KAAL+D  R    Q 
Sbjct: 413 PERPSAPDIDIDFDDRRRGEMLRYAANKWGSDRVAQVITFGTIKTKAALKDSARVHYGQP 472

Query: 468 PYSQVDRLCKLIPND-PAHPVSLQAIADDS--RFREARL------ADPSVDRLLEISQKL 518
            ++  DR+ K +P    A  + +  I D +  R++EA         DP V  + E ++ L
Sbjct: 473 GFAIADRITKALPPPIMAKDIPVSGITDPTHERYKEAAEVRALIDTDPDVRTIYETARGL 532

Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
           EGL R+A  HA  +++   PL   +P+++  +    +T ++    E  GL+K DFLGL+ 
Sbjct: 533 EGLVRNAGVHACAVIMSSEPLIDAIPLWKRPQDGAVITGWDYPSCEAIGLLKMDFLGLRN 592

Query: 579 LTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
           LT++   ++ + A RGV VDL  +  DD + Y LL    TLG+FQL+ S MR  L  MQP
Sbjct: 593 LTIIGDCIENIKANRGVDVDLESLALDDPKAYELLGRGDTLGVFQLDGSAMRDLLRRMQP 652

Query: 638 DCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIY 691
               DI+A+++LYRPGP+       Y +RKNG++ I  IHP ++  LK    ET G+I+Y
Sbjct: 653 TEFNDIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKDILAETYGLIVY 712

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QEQ+M IAQ ++ YS+ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++
Sbjct: 713 QEQIMFIAQKVASYSMGKADALRKAMGKKKLEVLEAEYKGFKEGMTANGFSEGAVKALWD 772

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +  FA Y FNKSHAA Y ++SY TA++K +Y  E++A  +T   D+ +K   +  D R+
Sbjct: 773 TILPFAGYAFNKSHAAGYGLVSYWTAYLKANYQAEYMAGLLTSVGDDKDKAAIYLADCRR 832

Query: 812 FNIQIMPPSVNTPCVDF-KVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFC 869
             I ++PP VN    +F  VGD+ I + L A++ VG      ++    +K  +    D+ 
Sbjct: 833 LGITVLPPDVNESVQNFASVGDD-IRFGLGAVRNVGANVVASLVSTREEKGKYTDFSDYL 891

Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-- 927
           +++D     ++V ESL+ AGA D  G+ R  L     +        +K       ++F  
Sbjct: 892 NKIDITACTKKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGG 951

Query: 928 -----AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                      F+ K+  E++  ++   +   E+ +LG Y SGHPL+
Sbjct: 952 GDDDGDTGDSAFTIKVPDEEWEDKH---KLALEREMLGLYVSGHPLN 995


>gi|120403761|ref|YP_953590.1| DNA polymerase III subunit alpha [Mycobacterium vanbaalenii PYR-1]
 gi|119956579|gb|ABM13584.1| DNA polymerase III, alpha subunit [Mycobacterium vanbaalenii PYR-1]
          Length = 1182

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 345/1006 (34%), Positives = 539/1006 (53%), Gaps = 57/1006 (5%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S SFVHL  H+ YS+L+GA  +  +L +    + PAI +TD  N+F A EF   A  AGI
Sbjct: 2   SGSFVHLHNHTEYSMLDGAAKVKPMLAEAQRLEMPAIGMTDHGNMFGASEFYNAATDAGI 61

Query: 68  QPIIGCQLDID----------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
           +PIIG +  I           +  +    +   +   +   + ++   A G + L +L S
Sbjct: 62  KPIIGIEAYIAPASRFETKRVLWGDPSQKSDDVSGGGSYTHMTMVAENATGLRNLFKLSS 121

Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
                 Q  +  R+    + E   EG+I  TG  SG +         + A +    ++++
Sbjct: 122 LASFEGQLGKWARMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHDREALEAAARWREI 180

Query: 178 FG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           FG +  ++ L  H G D   R RE  ++ +     +P +ATN+  +++ +  + H+ L+ 
Sbjct: 181 FGPENFFLELMDH-GLDIERRVREG-LLDIGQKLGIPPLATNDCHYVTRDAAQNHEALLC 238

Query: 234 VAHSTVVSQKDRPRVTPDHY-LKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPI 291
           +     +S  +R +   D Y LK+ +EM +++   +P A ++T+ IA R      V  P 
Sbjct: 239 IQTGKTLSDPNRFKFDGDGYFLKSAAEMRALWDGQVPGACDSTLLIAERVQSYADVWTPK 298

Query: 292 --LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
             +P F   E  D    + + L ++ + GL+ R   GA       Q+Y  R  +E+ VI 
Sbjct: 299 DRMPIFPVPEGHD----QGSWLTHEVMTGLQERRFHGAPVP----QEYIDRAQYEIKVIC 350

Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
              F  YFLIVAD I +A+   I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLN
Sbjct: 351 DKGFPAYFLIVADLINYARSVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLN 410

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467
           P+R S PD DIDF   RR E++RY  NK+G +RVAQ+ITFG+++ KAAL+D  R    Q 
Sbjct: 411 PERPSAPDIDIDFDDRRRGEMLRYAANKWGSDRVAQVITFGTIKTKAALKDSARVHYGQP 470

Query: 468 PYSQVDRLCKLIPND-PAHPVSLQAIADDS--RFREARL------ADPSVDRLLEISQKL 518
            ++  DR+ K +P    A  + +  I D +  R++EA         DP V  + E ++ L
Sbjct: 471 GFAIADRITKALPPPIMAKDIPVSGITDPTHERYKEAAEVRALIDTDPDVRTIYETARGL 530

Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
           EGL R+A  HA  +++   PL   +P+++  +    +T ++    E  GL+K DFLGL+ 
Sbjct: 531 EGLVRNAGVHACAVIMSSEPLIDAIPLWKRPQDGAVITGWDYPSCEAIGLLKMDFLGLRN 590

Query: 579 LTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
           LT++   ++ + A RG+ VDL  +  DD + Y LL    TLG+FQL+   MR  L  MQP
Sbjct: 591 LTIIGDCIENIKANRGIDVDLESLTLDDPKAYELLGRGDTLGVFQLDGGPMRDLLRRMQP 650

Query: 638 DCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIY 691
               DI+A+++LYRPGP+       Y +RKNG++ I  IHP L +P+   L ET G+I+Y
Sbjct: 651 TEFNDIVAVLALYRPGPMGMNAHNDYADRKNGRQAIKPIHPELEEPLKDILSETYGLIVY 710

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QEQ+M IAQ ++ YS+ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++
Sbjct: 711 QEQIMFIAQKVASYSMGKADALRKAMGKKKLEVLEAEYQGFKEGMTANGFSEKAVKALWD 770

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +  FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+
Sbjct: 771 TILPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRR 830

Query: 812 FNIQIMPPSVNTPCVDF-KVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFC 869
             I ++PP VN    +F  VGD+ I + L A++ VG      ++    +K  F    D+ 
Sbjct: 831 LGITVLPPDVNESVQNFASVGDD-IRFGLGAVRNVGANVVSSLVATRKEKGKFADFSDYL 889

Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
           +++D    N++V ESLV AGA D  G+ R  L     +        +K       ++F  
Sbjct: 890 NKIDIAACNKKVTESLVKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGG 949

Query: 930 EKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLD 969
             G+ +D      F+++     +E+      E+ +LG Y SGHPL+
Sbjct: 950 ADGSGADAGD-SAFTIKVPDEEWEDKHKLALEREMLGLYVSGHPLN 994


>gi|284928809|ref|YP_003421331.1| DNA-directed DNA polymerase III PolC [cyanobacterium UCYN-A]
 gi|284809268|gb|ADB94973.1| DNA-directed DNA polymerase III PolC [cyanobacterium UCYN-A]
          Length = 873

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 312/815 (38%), Positives = 479/815 (58%), Gaps = 70/815 (8%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L VHS+YSLL+GA  L+ ++D+      PAIA+TD   ++ A+E  +      I+P
Sbjct: 2   SFVGLHVHSAYSLLDGASQLDALVDRAIQLGMPAIALTDHGVMYGAIELIKVCKNKNIKP 61

Query: 70  IIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD- 123
           IIG ++     DI  +   K  +Q           V+L    +GY+ L +L +  +L   
Sbjct: 62  IIGNEMYVINGDITEKKRYKKYHQ-----------VVLAKNTQGYKNLSKLTTISHLEGV 110

Query: 124 QGKQSV-RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
           QGK    R C++  L E   +GLI+ +    G I +       Q A++    +KK+F + 
Sbjct: 111 QGKGIFSRPCINKELLEKYHDGLIVTSACLGGEIPQKILSGDFQGAKEVAQWYKKIFAND 170

Query: 182 LYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            Y+ +Q H    DR     + ++A    + ++ATN+S F S  D EAHD L+ +  + ++
Sbjct: 171 FYLEIQDHGSTEDRIVNVSISKIAQDLNIKIIATNDSHFTSCYDVEAHDALLCIQTAKLI 230

Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPR 294
           S + R R +   YLK+  EM  +F D      + EA+ NT+E+A +      +  P +P 
Sbjct: 231 SDEKRLRYSGTEYLKSIDEMKLLFRDHLDDDLIKEAINNTLEVANKIDTYHILGEPRIPD 290

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
           F      D+    ++ +R  ++ GL  RL   +I +   +++Y+QRL++EL+++ +M FS
Sbjct: 291 FPVPIGHDL----DSYVREISLQGLLERLNCKSINQV--SEEYQQRLEYELDMLEKMGFS 344

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFL+V D+I++A+ N IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP+R S
Sbjct: 345 SYFLVVWDYIKYARDNEIPVGPGRGSAAGSLVAYSLKITNIDPIYHGLLFERFLNPERKS 404

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           MPD D DFC +RRDE+I+YV  KYG + VAQIITF  + +KA L+DV R L +PYS+ D+
Sbjct: 405 MPDVDTDFCIERRDEMIKYVTKKYGEKNVAQIITFNRMTSKAVLKDVARVLDIPYSESDK 464

Query: 475 LCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
           + K+IP     P  L+ +  +      F++    DP V R L+++ ++EG  +    HAA
Sbjct: 465 MTKMIPVTRGKPTKLKVMVSNETPSPEFKDRYDQDPLVRRWLDMAIRIEGTNKTFGVHAA 524

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           G+VI    L ++VP+ ++      +TQ+ M+ +E  GL+K DFLGL+ LT +Q++ D + 
Sbjct: 525 GVVISSESLDEIVPLQKN-NDGAVITQYYMEDLESLGLLKMDFLGLRNLTTIQRAADLIE 583

Query: 591 Q-RGVKVDLSLIPFD------------------DHETYHLLTTKGTL-GIFQLESSGMRQ 630
           + R +K+D+  +P D                  D E  H L   G L GIFQLESSGM+Q
Sbjct: 584 KNRNIKLDVEQLPTDERKALKELEQGKISKLPTDIEKTHKLLGDGELEGIFQLESSGMKQ 643

Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            ++ ++P  IEDI ++++LYRPGP+D  ++  + NRK+GKE I     L++P+LKET  V
Sbjct: 644 IVKDLKPSGIEDISSILALYRPGPLDAGLIPKFINRKHGKEAIKYEDKLLEPILKETYAV 703

Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
           ++YQEQ+M +AQ L+GYSL EAD+LRRAMGKK   EM+K ++ FI G+  NG+S+++A N
Sbjct: 704 LVYQEQIMTMAQQLAGYSLGEADLLRRAMGKKKASEMEKHQKNFIDGSLNNGVSRSVAEN 763

Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           +F+ + KFA+Y            +SY T  +   Y
Sbjct: 764 LFQQMVKFAEY-----------CLSYDTKVLTVEY 787


>gi|295426301|ref|ZP_06818961.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            amylolyticus DSM 11664]
 gi|295064040|gb|EFG54988.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            amylolyticus DSM 11664]
          Length = 1040

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 336/1028 (32%), Positives = 545/1028 (53%), Gaps = 47/1028 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  S++SLLE    + ++L         A+A+TD N  +  + F + A   GI+ ++G 
Sbjct: 6    LQNLSAFSLLESPTRVKDLLTTAKKRNYGAVALTDINVTYGLVNFFELAKEVGIKALLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
            Q+ I+          G     +   ++ +  +  GY  L+ L S + LL D G  +  + 
Sbjct: 66   QIRIN----------GLIDPTSKYDLIAIAKSNAGYHNLLRLSSAINLLTDNGNNNKILT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRHR 190
            L  L +   E +I++       +       + Q+    +   K++     +LY+ +   +
Sbjct: 116  LKELTKYLDEMVIIVPANQHSEL-VMLSQRNDQLGADFVRELKEIVPATSQLYLGVYASK 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RV 248
              + Y +  +  LA    LPLVAT +  +L+ +D+     L A+     + Q   P  + 
Sbjct: 175  NQNNYIDY-IQSLAKQFALPLVATEDCQYLNPQDHFLRKTLQAIKQGDKL-QDIVPLSKQ 232

Query: 249  TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            T  HYL    E+ S + D  L +AL NT +IA  C+  +    P+LP++ +   D     
Sbjct: 233  TGSHYLAEGEELFSRYHDFYLDQALNNTWKIAEECNAEVIFQKPVLPKYHQ---DKFASS 289

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +E  L   A  GL+ R     + + Y     ++RL +EL+VI RM F  YFLIV D I +
Sbjct: 290  KE-YLLYLAQNGLKARFKGKNVPEAY-----QKRLRYELDVINRMGFDDYFLIVWDVINY 343

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
              +  I  GPGRGS  GS+ +YAL IT++DPL + LLFERFLNP R  MPD D+D    R
Sbjct: 344  CHRVGITTGPGRGSACGSLVSYALRITEVDPLEYHLLFERFLNPARHEMPDIDLDIPDIR 403

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD+VI+Y+  KYG +  AQI+TFG+L AK ALRD GR   +   ++++    +P      
Sbjct: 404  RDDVIKYMYRKYGMDHAAQILTFGTLAAKQALRDTGRVFGLSVVELNKWADAVPYSKGK- 462

Query: 487  VSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            ++L     +SR     +   S ++LL + ++ LEGL RH S HAAG+VI D  ++ +  +
Sbjct: 463  ITLNEAYQESRQTRLIVDSTSENKLLFQTARALEGLPRHYSIHAAGLVISDNSIASISGL 522

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
             +  +  +PVTQ   K++E  GL+K DFLGL+ LT+L  +L  +  +G+ +D + IP +D
Sbjct: 523  -QAGQLGIPVTQQTKKYVESLGLLKIDFLGLRNLTILGNTLALIKSQGINIDPNKIPLND 581

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T  +FQ ES G+R+ L  + PD  ED++A+ +LYRPGP+ NI  +  RK
Sbjct: 582  AKTLELFRTGKTDAVFQFESEGIRKVLRKLSPDNFEDLVAVNALYRPGPMQNIDTFIARK 641

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G++ IV   P +  +L  T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK +  +
Sbjct: 642  KGEQAIVYPDPSLKQILAPTYGILVYQEQVMQTAQILAGFSLGEADLLRRAMSKKNQALI 701

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             ++K +FI G  + G SK +   +++ + +FA+YGFN+SHA AY  I+Y  A++K HYP 
Sbjct: 702  GQEKAKFIEGTIQKGHSKQVGERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPA 761

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  A +     +  K + +   A++  I+I+PP +N   +DFK+   +I   L AIKG+
Sbjct: 762  AFYTALLNSSGASKLKAQNYIMQAQEAGIRILPPDINQSGLDFKLLKGQILVGLKAIKGL 821

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 + I++    KP  SL+DF  +++ K L    + +L+ AG  D    +R +LL + 
Sbjct: 822  RNDFTKSIVQLK--KPIKSLDDFLRKIELKYLQLDPIRALIMAGCFDHLNDNRNELLVNC 879

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              + +  Q   +N +                   ++K +   SS R + E++VLGF  + 
Sbjct: 880  KEMIENVQLTGQNLS----------LSELLGDAPIKKAAAPTSSQRADMEEKVLGFSTTT 929

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             PL V +   +K   K   +    I  N++ +  ++  K   +T+KG  + + +F++ + 
Sbjct: 930  TPLIVVQKYAQKFNAKALNQ--VDINENSVCVGKLMKLK-LIRTKKGQTMAFASFADSSS 986

Query: 1026 EYEANFFP 1033
            + E   FP
Sbjct: 987  QQEVTIFP 994


>gi|256850997|ref|ZP_05556386.1| DNA polymerase III alpha-chain [Lactobacillus jensenii 27-2-CHN]
 gi|260661209|ref|ZP_05862123.1| DNA polymerase III alpha-chain [Lactobacillus jensenii 115-3-CHN]
 gi|256616059|gb|EEU21247.1| DNA polymerase III alpha-chain [Lactobacillus jensenii 27-2-CHN]
 gi|260548146|gb|EEX24122.1| DNA polymerase III alpha-chain [Lactobacillus jensenii 115-3-CHN]
          Length = 1039

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 330/1033 (31%), Positives = 552/1033 (53%), Gaps = 58/1033 (5%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS+SLL+  + +++++         ++A+TD N  +  ++F   A  A ++P++G 
Sbjct: 6    LQTLSSFSLLKSPILIDDLVKDAVDKGYSSLALTDINVTYGLVDFYLAAQKANLKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
             + ++      + +Q          ++ +    +GY+ ++ L S + L  D G +   + 
Sbjct: 66   TIRLN-----GIVDQAHRY-----DLISIAKNNQGYKNILRLSSAINLKTDNGDERKVLT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQ--R 188
            L  L +  ++ + ++    +  + R    N+ ++    +   +K+      LY+ +   +
Sbjct: 116  LKQLAKYLSDQVFIVPANITSEL-RYLAENNEKLGSDFIRELQKIIPSSSDLYLGVYAGK 174

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247
            ++ Y  Y +S   Q      LPL AT +  +L   D+     L A+     +V       
Sbjct: 175  NQPYIDYAKSMAKQF----NLPLAATEDVQYLQASDHFLVKTLRAIEQGQKLVDTSSLAL 230

Query: 248  VTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                HYL+   E+VS +++  +  AL N  +IA  C   +    P LP++ +    D +K
Sbjct: 231  QKGSHYLRTSGELVSAYNECGILSALHNAAKIADECKASVTFTQPELPKYKQSFAPDSKK 290

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVA 361
                 LR         +L Q  +A+ ++ Q     Y++RLD+EL +I +M F  YFLIV 
Sbjct: 291  Y----LR---------QLVQKGLARRFNGQTIPEIYQKRLDYELKIIDQMGFDDYFLIVW 337

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D I +A   +I  GPGRGS AGS+ AY+L IT++DP++++LLFERFLNP R  MPD D+D
Sbjct: 338  DVINYAHSVDITTGPGRGSAAGSLVAYSLAITEVDPIKYNLLFERFLNPARAQMPDIDLD 397

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
               +RRDE+I+Y+  KYG +  AQI+TFG+L AK ALRD  R   +   Q  +    IP 
Sbjct: 398  IPDNRRDEIIKYMFEKYGMDHAAQILTFGTLAAKQALRDCARVFGLTTIQASKFTHAIPF 457

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLS 540
              +  ++L     +S+  +  +    +++LL + + +LEG+ RHAS HAAG+VI D+ ++
Sbjct: 458  SKSK-ITLAQAYQESKALQLLVNASELNKLLFKTAMRLEGIPRHASIHAAGLVISDKSIA 516

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            Q+  +       +PVTQ     +E+ GL+K DFLGL+ LT+L  +++ LA+ G+K+D   
Sbjct: 517  QIAGLQAGTLG-IPVTQQTKAHVEELGLLKIDFLGLRNLTILGDTVELLAKDGIKLDPKR 575

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD +T  L     T  +FQ ES G++  L  + PD  ED++A+ +LYRPGPI NI  
Sbjct: 576  IPLDDVKTLQLFQRGKTDAVFQFESQGIKNVLRRLHPDSFEDVVAVNALYRPGPIQNIDH 635

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + NRK GKE I      +  +L+ T G+++YQEQVMQ AQ+++G+SL EAD+LRRAM KK
Sbjct: 636  FINRKQGKEPITYPDSSLAKLLQPTYGILVYQEQVMQTAQIMAGFSLGEADLLRRAMSKK 695

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++ +D+++E+FI+GA KNG  +  A  ++  + +FA+YGFN+SHA AY+ I++  A++K
Sbjct: 696  KQDLIDQEREKFIAGAVKNGHPQATASKVYAYIEQFANYGFNRSHAVAYSKIAFWLAYLK 755

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYP  F  A +     N  K  ++   A++  ++I+ P +N    D+ + + +I   L 
Sbjct: 756  VHYPAAFFTALLNSVSANRVKAGEYITQAQEAGVKILAPDINNSQTDYYLVNGQIQVGLK 815

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKG+     R+I  A   K F SL DF  ++D K L+ + + +++ AG  D    +R  
Sbjct: 816  AIKGLRVDFLRNI--AGLPKNFTSLADFLRKIDVKFLSEQAIAAMIKAGCFDKIDENRKM 873

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL +   I +  ++  +N T       +   G     I LE+    NS+ +   E+ VLG
Sbjct: 874  LLANCKEIVENIKFTGQNET------LSEGLGG----IRLEQAPAPNSNEKATMEEEVLG 923

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            F  +  P+ V +    +   +       T+    I +  ++  K   +T+KG  + + TF
Sbjct: 924  FSTTKTPILVVQKYAERFNAQALNS--FTVNETGIAVGKLIKLK-LIRTKKGDTMAFSTF 980

Query: 1021 SEPAKEYEANFFP 1033
             + + E E   FP
Sbjct: 981  RDASSEQEITIFP 993


>gi|262202886|ref|YP_003274094.1| DNA polymerase III subunit alpha [Gordonia bronchialis DSM 43247]
 gi|262086233|gb|ACY22201.1| DNA polymerase III, alpha subunit [Gordonia bronchialis DSM 43247]
          Length = 1180

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 361/1079 (33%), Positives = 567/1079 (52%), Gaps = 78/1079 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  +  +  +       AI +TD  N+F A EF   A    I+P
Sbjct: 4    SFVHLHNHTEYSMLDGAAKVAPLFAEAKRLGMTAIGMTDHGNMFGASEFYNTAVKNDIKP 63

Query: 70   IIGCQLDI----------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
            IIG +  +                D +D+  ++  G         + ++   A G + L 
Sbjct: 64   IIGIEAYVAPASRFETKRVTWGTRDQKDD-DVSGSG-----AYTHMTMVAENATGLRNLF 117

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +L S   +  Q  +  R+    + E   EG+I  TG  SG +         + A +    
Sbjct: 118  KLSSLASIEGQLGKWARMDADIIAEY-AEGIIATTGCPSGEVQTRLRLGHEREALEAAAK 176

Query: 174  FKKLFG-DRLYVNLQRHRGYDRYRESQVVQLAYTHEL---PLVATNNSLFLSEEDYEAHD 229
            ++++FG +  Y+ L  H G +  R  +   L    +L   PLV TN+  +++++  ++H+
Sbjct: 177  WQEIFGKENFYLELMEH-GLEIERRVRDGLLEVGRKLGIKPLV-TNDCHYVTKDHAKSHE 234

Query: 230  VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQV 287
             L+ V     +S   R +   D +YLK+ +EM  ++ S +P A +NT+EI  R      V
Sbjct: 235  ALLCVQTGKTLSDPTRFKFDGDGYYLKSAAEMRELWDSVVPGACDNTLEIGERVQSYADV 294

Query: 288  --HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
              H   +P F   E +     ++  LR +   GL  R   GA       ++Y++R ++EL
Sbjct: 295  FTHRDRMPVFPVPEGE----SQQTWLRKEVAKGLAERRFAGAEVP----REYQERANYEL 346

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +VI +M F  YFL+V D I+ A++  I VGPGRGS AGS+ A+AL IT+IDP+   LLFE
Sbjct: 347  DVIIQMGFPAYFLVVGDLIRHAQEVGIRVGPGRGSAAGSLVAWALGITNIDPIPHGLLFE 406

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+SMPD DIDF   RR E++RY  +++G ++VAQ+ITFG+++ KAA++D  R  
Sbjct: 407  RFLNPERVSMPDIDIDFDDRRRGEMVRYATDRWGSDKVAQVITFGTIKTKAAIKDSARVQ 466

Query: 466  --QMPYSQVDRLCKLIPND-PAHPVSLQAIA--DDSRFREAR------LADPSVDRLLEI 514
              Q  +S  DR+ K +P    A  + +  I   D  RF EA         DP V ++ + 
Sbjct: 467  FGQPGFSIADRITKALPPPIMAKDIPVWGITDPDHERFNEAAEVRSLIETDPDVKKIYDT 526

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            +  LEGL R+A  HA  +++   PL+  +P++R  +    +T ++    E  GL+K DFL
Sbjct: 527  ALGLEGLIRNAGVHACAVIMSSEPLTDAIPVWRRAQDGAIITGWDYPSCEAIGLLKMDFL 586

Query: 575  GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT++  +++ +   RG  +DL   P DD +TY LL    TLG+FQL+   MR+ L+
Sbjct: 587  GLRNLTVIGDAIENIKINRGFDLDLDDAPLDDPKTYELLARGDTLGVFQLDGGAMRELLK 646

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQG 687
             MQP   EDI+A+++LYRPGP+       Y +RKNG++++  IHP L +P+   L +T G
Sbjct: 647  RMQPTGFEDIVAVLALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELAEPLKEILADTYG 706

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQ+MQIAQ ++GYSL  AD+LRRAMGKK  E +  + E F +G   NG S     
Sbjct: 707  LIVYQEQIMQIAQKVAGYSLGRADILRRAMGKKKAEVLAAEFEGFEAGMKANGFSGPAIK 766

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             +++ +  FA Y FNKSHAA Y ++S+ TA++K +YP E++A  +T   D+ +K   +  
Sbjct: 767  ALWDTILPFAGYAFNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAIYLA 826

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLE 866
            D R+  I ++PP VN    +F      I + LAAI+ VG+     I+ A  +K  F S  
Sbjct: 827  DCRKLGITVLPPDVNESQRNFAAVGTDIRFGLAAIRNVGSGVVSSILAAREEKGKFTSFS 886

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            D+  ++D    N++V ESL+ AGA D   + R  L        +     +K       ++
Sbjct: 887  DYLGKIDVTACNKKVTESLIKAGAFDSLAHPRKGLFLVHGEAVESVLGTKKAEAIGQFDL 946

Query: 927  FAHEKGTFSDKITLEKFSVE------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
            F    G  +D    E F+V+      ++  +   E+ +LG Y SGHPL   +  +     
Sbjct: 947  FGDAGG--ADDTMAEVFAVKVPDEEWDTKHKLAIEREMLGLYVSGHPLSGVEHAIAAH-- 1002

Query: 981  KGYEESVATI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               + S+ T+       G  I +  ++ S  ++  +KG     VT  +     E  FFP
Sbjct: 1003 --TDTSITTLLEGNIADGAQITIGGIISSVTRRVNKKGEPWAAVTLEDMVGGVEVYFFP 1059


>gi|282932049|ref|ZP_06337507.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 208-1]
 gi|281303816|gb|EFA95960.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 208-1]
          Length = 1039

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 330/1033 (31%), Positives = 552/1033 (53%), Gaps = 58/1033 (5%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS+SLL+  + +++++         ++A+TD N  +  ++F   A  A ++P++G 
Sbjct: 6    LQTLSSFSLLKSPILIDDLVKDAVDKGYSSLALTDINVTYGLVDFYLAAQKANLKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
             + ++      + +Q          ++ +    +GY+ ++ L S + L  D G +   + 
Sbjct: 66   TIRLN-----GIVDQAHRY-----DLISIAKNNQGYKNILRLSSAINLKTDNGDERKVLT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNL--QR 188
            L  L +  ++ + ++    +  + R    N+ ++    +   +K+      LY+ +   +
Sbjct: 116  LKQLAKYLSDQVFIVPANITSEL-RYLAENNEKLGSDFIRELQKIIPSSSDLYLGVYAGK 174

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247
            ++ Y  Y +S   Q      LPL AT +  +L   D+     L A+     +V       
Sbjct: 175  NQPYIDYAKSMAKQF----NLPLAATEDVQYLPASDHFLVKTLRAIEQGQKLVDTSSLAL 230

Query: 248  VTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                HYL+   E+VS +++  +  AL N  +IA  C   +    P LP++ +    D +K
Sbjct: 231  QKGSHYLRTSGELVSAYNECGILSALHNAAKIADECKASVTFTQPELPKYKQSFAPDSKK 290

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVA 361
                 LR         +L Q  +A+ ++ Q     Y++RLD+EL +I +M F  YFLIV 
Sbjct: 291  Y----LR---------QLVQKGLARRFNGQTIPEIYQKRLDYELKIIDQMGFDDYFLIVW 337

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D I +A   +I  GPGRGS AGS+ AY+L IT++DP++++LLFERFLNP R  MPD D+D
Sbjct: 338  DVINYAHSVDITTGPGRGSAAGSLVAYSLAITEVDPIKYNLLFERFLNPARAQMPDIDLD 397

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
               +RRDE+I+Y+  KYG +  AQI+TFG+L AK ALRD  R   +   Q  +    IP 
Sbjct: 398  IPDNRRDEIIKYMFEKYGMDHAAQILTFGTLAAKQALRDCARVFGLTTIQASKFTHAIPF 457

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLS 540
              +  ++L     +S+  +  +    +++LL + + +LEG+ RHAS HAAG+VI D+ ++
Sbjct: 458  SKSK-ITLAQAYQESKALQLLVNASELNKLLFKTAMRLEGIPRHASIHAAGLVISDKSIA 516

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            Q+  +       +PVTQ     +E+ GL+K DFLGL+ LT+L  +++ LA+ G+K+D   
Sbjct: 517  QIAGLQAGTLG-IPVTQQTKAHVEELGLLKIDFLGLRNLTILGDTVELLAKDGIKLDPKR 575

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD +T  L     T  +FQ ES G++  L  + PD  ED++A+ +LYRPGPI NI  
Sbjct: 576  IPLDDVKTLQLFQRGKTDAVFQFESQGIKNVLRRLHPDSFEDVVAVNALYRPGPIQNIDH 635

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + NRK GKE I      +  +L+ T G+++YQEQVMQ AQ+++G+SL EAD+LRRAM KK
Sbjct: 636  FINRKQGKEPITYPDSSLAKLLQPTYGILVYQEQVMQTAQIMAGFSLGEADLLRRAMSKK 695

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++ +D+++E+FI+GA KNG  +  A  ++  + +FA+YGFN+SHA AY+ I++  A++K
Sbjct: 696  KQDLIDQEREKFIAGAVKNGHPQATASKVYAYIEQFANYGFNRSHAVAYSKIAFWLAYLK 755

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYP  F  A +     N  K  ++   A++  ++I+ P +N    D+ + + +I   L 
Sbjct: 756  VHYPAAFFTALLNSVSANRVKAGEYITQAQEAGVKILAPDINNSQTDYYLVNGQIQVGLK 815

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKG+     R+I  A   K F SL DF  ++D K L+ + + +++ AG  D    +R  
Sbjct: 816  AIKGLRVDFLRNI--AGLPKNFTSLADFLRKIDVKFLSEQAIAAMIKAGCFDKIDENRKM 873

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL +   I +  ++  +N T       +   G     I LE+    NS+ +   E+ VLG
Sbjct: 874  LLANCKEIVENIKFTGQNET------LSEGLGG----IRLEQAPAPNSNEKATMEEEVLG 923

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            F  +  P+ V +    +   +       T+    I +  ++  K   +T+KG  + + TF
Sbjct: 924  FSTTKTPILVVQKYAERFNAQALNS--FTVNETGIAVGKLIKLK-LIRTKKGDTMAFSTF 980

Query: 1021 SEPAKEYEANFFP 1033
             + + E E   FP
Sbjct: 981  RDASSEQEITIFP 993


>gi|22299599|ref|NP_682846.1| DNA polymerase III subunit alpha [Thermosynechococcus elongatus
           BP-1]
 gi|22295783|dbj|BAC09608.1| DNA polymerase III alpha subunit [Thermosynechococcus elongatus
           BP-1]
          Length = 872

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 325/794 (40%), Positives = 472/794 (59%), Gaps = 47/794 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L +++ +      PAIA+TD   ++ A+E  +      ++P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPDLVARAMELGMPAIALTDHGVMYGAIELLKLCRGKPLKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTP-FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IIG ++ +    N  +T Q + P F  V    +L    +GY  L +L +  +L  QG Q 
Sbjct: 62  IIGNEMYVI---NGDITKQERKPRFHQV----VLAKNKQGYHNLCKLTTISHL--QGFQG 112

Query: 129 ----VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                R C++  L     EGLI+ +    G I +A      ++A      +++ FG+  Y
Sbjct: 113 KGIFARPCINKELLAQYREGLIVTSACLGGEIPQAILQGKPELARSVAAWYQQTFGEDFY 172

Query: 184 VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           + +Q H    DR    ++V++     + ++ATN+S F+S  D EAHD L+ +  + ++S 
Sbjct: 173 LEIQDHGSQEDRVVNVELVRIGRELGIKIIATNDSHFISCHDVEAHDALLCIQTNKLLSD 232

Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCSFILQVHAPILPRFI 296
           + R R +   YLK+ +EM  +F D LP     EAL NT+E+A +         P  P F 
Sbjct: 233 EKRLRYSGTEYLKSAAEMARLFRDHLPDEVIQEALANTLEVADKIEAYNIFREPQSPEFP 292

Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                      +  L   A  GL  R  Q +  +   A  YRQRL++EL ++ +M FS Y
Sbjct: 293 VPPG----HTADTYLEQVAWQGLLERF-QLSDRQQLEA-TYRQRLEYELKMLQQMGFSNY 346

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
           FL+V D+I++A+ +NIPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMP
Sbjct: 347 FLVVWDYIKYARDHNIPVGPGRGSAAGSLVAYALRITNIDPVHHGLLFERFLNPERKSMP 406

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           D D DFC DRR+EVI+YV  KYG +RVAQIITF  + +KA L+DV R L +PYSQ D++ 
Sbjct: 407 DIDTDFCIDRREEVIQYVTQKYGSDRVAQIITFNRMTSKAVLKDVARVLDIPYSQADQMA 466

Query: 477 KLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
           KLIP     PV L  +  +      F+E   +DP V R ++++ ++EG  +    HAAG+
Sbjct: 467 KLIPVVRGKPVKLAVMISEETPSPEFKEKYDSDPVVRRWIDMAMRIEGTNKTYGVHAAGV 526

Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
           VI   PL QLVP+ R+    + +TQ+ M+ +E  GL+K DFLGLK LT+LQK+ + + + 
Sbjct: 527 VIASEPLDQLVPLQRNNDGAV-ITQYFMEDLESLGLLKMDFLGLKNLTMLQKTQELIEKN 585

Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            G ++DL  +P DD +TY LL      GIFQLESSGM Q +  ++P  +EDI ++++LYR
Sbjct: 586 HGQRIDLDALPLDDAKTYQLLAEGKLEGIFQLESSGMHQIVRELKPSNLEDISSVLALYR 645

Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
           PGP+D  ++  + NRK+G+E I   H L+ P+L ET GV+ YQEQ+M++AQ L+GYSL +
Sbjct: 646 PGPLDAGLIPKFINRKHGREPIQYQHELLKPILSETYGVLCYQEQIMRMAQDLAGYSLGQ 705

Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
           AD+LRRAMGKK KEEM+K +  FI GA+KNG+   IA  +F+ +  FA+Y          
Sbjct: 706 ADLLRRAMGKKKKEEMEKHEALFIEGAAKNGVPSAIAQELFKQMLDFAEY---------- 755

Query: 770 AVISYQTAWMKTHY 783
             +S +TA M   Y
Sbjct: 756 -CLSGETAVMTVEY 768


>gi|170078017|ref|YP_001734655.1| DNA polymerase III subunit alpha [Synechococcus sp. PCC 7002]
 gi|169885686|gb|ACA99399.1| DNA polymerase III alpha subunit [Synechococcus sp. PCC 7002]
          Length = 882

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 312/806 (38%), Positives = 475/806 (58%), Gaps = 51/806 (6%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  +  ++ +    + PAIA+TD   ++ A+E  +      I+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQIKPLIKRAEELKMPAIALTDHGVMYGAIELLKTCRNKRIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQS 128
           IIG ++ +   D    T + K         V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62  IIGNEMYVINGDIEDKTQRFKKYHQ-----VVLAKNTQGYKNLVKLTTISHLKGFQGKGI 116

Query: 129 -VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R C++  L E   EGLIM +    G + +       Q A +    +K +FGD  Y+ +
Sbjct: 117 FARPCINKELIEQHHEGLIMTSACLGGEVPQCILKGEYQRAREVAKWYKNIFGDDYYLEI 176

Query: 187 QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           Q H    DR    ++V++A   ++ ++ATN+S F+S  D EAHD L+ +  + ++++  R
Sbjct: 177 QDHGSQEDRIVNVEIVKIAQELDIKIIATNDSHFISCYDVEAHDALLCIQTAKLITEDKR 236

Query: 246 PRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            R +   YLK+  EM  +F D      + +A+ NT+E+A +      +  P +P +   E
Sbjct: 237 LRYSGTEYLKSADEMRKLFRDHLDPGIIDQAIANTLEVAAKVEPYKILGEPRIPDYPVPE 296

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   ++ L      GL  RL     A+      Y++RL++EL ++ +M FS YFL+
Sbjct: 297 G----HTADSYLEAVTWDGLLKRLKCKTQAEV--DPTYKERLEYELQMMQQMGFSTYFLV 350

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V D++++A+ N+IPVGPGRGS AGS+ AY+L IT+IDP+  SLLFERFLNP+R SMPD D
Sbjct: 351 VWDYVKYARDNDIPVGPGRGSAAGSLVAYSLGITNIDPIHHSLLFERFLNPERKSMPDVD 410

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            DFC +RRDE+I+YV  KYG +RVAQIITF  + +KA L+DV R L +PY + D + K+I
Sbjct: 411 TDFCIERRDEMIKYVTEKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADMMAKMI 470

Query: 480 PNDPAHPVSLQA-IADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
           P     P  L+  I+DD+    F+     DP V R ++++ ++EG  +    HAAG+VI 
Sbjct: 471 PVARGKPAKLKVMISDDTPEPEFKRRYETDPQVRRWVDMAIRIEGTNKTFGVHAAGVVIS 530

Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
             PL + VP+ R+    + +TQ+ M+ +E  GL+K DFLGLK LT ++K+ D + + R V
Sbjct: 531 STPLDEAVPLQRNNEGAV-ITQYYMEDVEAMGLLKMDFLGLKNLTTIKKAADLIKEYRHV 589

Query: 595 KVDLSLIPFD------------------DHETYHLLTTKGTL-GIFQLESSGMRQALEGM 635
           ++DL  +P D                  D +  H L  +G L GIFQLES GM++ ++ +
Sbjct: 590 ELDLDQLPLDERKALEIISKGHAKKLPGDIDKTHDLFGRGDLEGIFQLESDGMKKIVQDL 649

Query: 636 QPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
           +P  IEDI ++++LYRPGP+D   I ++ NRK+G EKI   H L+  +L ET GV++YQE
Sbjct: 650 RPSGIEDISSVLALYRPGPLDAGLIPIFINRKHGVEKIEYQHELLQSILNETYGVLVYQE 709

Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
           Q+M++AQ L+GYSL EAD+LRRAMGKK  +EM K + +F+ GA+ NG+S+ IA ++F+ +
Sbjct: 710 QIMKMAQDLAGYSLGEADLLRRAMGKKKIDEMKKHEAKFVEGAATNGVSEAIARDLFDQM 769

Query: 754 AKFADY---GFNKSHAAAYAVISYQT 776
            KFA+Y   G        Y V+  QT
Sbjct: 770 VKFAEYCLAGGTPVVTVEYGVLPIQT 795


>gi|297205881|ref|ZP_06923276.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus jensenii
            JV-V16]
 gi|297149007|gb|EFH29305.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus jensenii
            JV-V16]
          Length = 1040

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 326/1029 (31%), Positives = 547/1029 (53%), Gaps = 50/1029 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS+SLL+  + +++++         ++A+TD N  +  ++F   A    ++P++G 
Sbjct: 7    LQTLSSFSLLKSPILIDDLVKDAVDKGYSSLALTDINVTYGLVDFYLAAKKVNLKPLLGM 66

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
             + ++      + +Q          ++ +    +GY+ ++ L S + L  D G +   + 
Sbjct: 67   TIRLN-----GIVDQAHRY-----DLISIAKNNQGYKNILRLSSAINLKTDNGDERKVLT 116

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +  ++ + ++    +  + R    N+ ++    +   +K+      + L  + G 
Sbjct: 117  LKQLAKYLSDQVFIVPANITSEL-RYLAENNEKLGSDFIRELQKIIPSSSDLYLGAYAGK 175

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPD 251
            ++        +A    LPL AT +  +L   D+     L A+     +V           
Sbjct: 176  NQPYIDYAKSMAKQFNLPLAATEDVQYLQASDHFLVKTLRAIEQGQKLVDTSSLALQKGS 235

Query: 252  HYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HYL+   E+VS +++  +  AL N  +IA  C   +    P LP++ +    D     + 
Sbjct: 236  HYLRTSGELVSAYNECSILSALHNAAKIADECKASVTFTQPELPKYKQSFAPD----SKI 291

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             LR         +L Q  +AK ++ Q     Y++RLD+EL +I +M F  YFLIV D I 
Sbjct: 292  YLR---------QLVQKGLAKRFNGQPIPEIYQKRLDYELKIIDQMGFDDYFLIVWDVIN 342

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A   +I  GPGRGS AGS+ AY+L IT++DP++++LLFERFLNP R  MPD D+D   +
Sbjct: 343  YAHSVDITTGPGRGSAAGSLVAYSLAITEVDPIKYNLLFERFLNPARAQMPDIDLDIPDN 402

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDE+I+Y+  KYG +  AQI+TFG+L AK ALRD  R   +   Q  +    IP   + 
Sbjct: 403  RRDEIIKYMFEKYGMDHAAQILTFGTLAAKQALRDCARVFGLTTIQASKFTHAIPFSKSK 462

Query: 486  PVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             ++L     +S+  +  +    +++LL + + +LEG+ RHAS HAAG+VI D+ ++Q+  
Sbjct: 463  -ITLAQAYQESKALQLLVNASELNKLLFKTAMRLEGIPRHASIHAAGLVISDKSIAQIAG 521

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +       +PVTQ     +E+ GL+K DFLGL+ LT+L  +++ LA+ G+K+D   IP D
Sbjct: 522  LQAGTLG-IPVTQQTKAHVEELGLLKIDFLGLRNLTILGDTIELLAKDGIKLDPKRIPLD 580

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T  L     T  +FQ ES G++  L  + PD  ED++A+ +LYRPGPI NI  + NR
Sbjct: 581  DIKTLQLFQKGKTDAVFQFESQGIKNVLRRLHPDSFEDVVAVNALYRPGPIQNIDHFINR 640

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K GKE I      +  +L+ T G+++YQEQVMQ AQ+++G+SL EAD+LRRAM KK ++ 
Sbjct: 641  KQGKEPITYPDSSLAKLLQPTYGILVYQEQVMQTAQIMAGFSLGEADLLRRAMSKKKQDL 700

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D+++E+FI+GA KNG  +  A  ++  + +FA+YGFN+SHA AY+ I++  A++K HYP
Sbjct: 701  IDQEREKFIAGAVKNGHPQATASKVYAYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHYP 760

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
              F  A +     N  K  ++   A++  ++I+ P +N    D+ + + +I   L AIKG
Sbjct: 761  AAFFTALLNSVSANRVKAGEYITQAQEAGVKILAPDINNSQTDYYLVNGQIQVGLKAIKG 820

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +     R+I  A   K F SL DF  ++D+K L+ + + +++ AG  D    +R  LL +
Sbjct: 821  LRVDFLRNI--AGLPKNFTSLADFLRKIDAKFLSEQAIAAMIKAGCFDKIDENRKMLLAN 878

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
               I +  ++  +N T       +   G     I LE+    NS+ +   E+ VLGF  +
Sbjct: 879  CKEIVENIKFTGQNET------LSEGLGG----IRLEQAPAPNSNEKATMEEEVLGFSTT 928

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
              P+ V +    +   +       T+    I +  ++  K   +T+KG  + + TF + +
Sbjct: 929  KTPILVVQKYAERFNAQALNS--FTVNETGIAVGKLIKLK-LIRTKKGDTMAFSTFRDAS 985

Query: 1025 KEYEANFFP 1033
             E E   FP
Sbjct: 986  SEQEITIFP 994


>gi|42519003|ref|NP_964933.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
 gi|41583290|gb|AAS08899.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
          Length = 1038

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 342/1036 (33%), Positives = 543/1036 (52%), Gaps = 61/1036 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQ  S ++LLE    + N+ +        AIA+TD N  +  ++F + A   GI+P++
Sbjct: 4    VSLQNLSGFTLLESPTKVKNLAENAKKKGYSAIALTDINITYGLVDFYKAAKDIGIKPLL 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVR 130
            G QL I+          G         ++++    +GY+ ++ L S + LL + G++ + 
Sbjct: 64   GMQLRIN----------GLIDGANKYDLIVIAKDDQGYRNILRLSSAVNLLTENGEKEIV 113

Query: 131  ICLSWLQE-IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQ 187
            + L  L++ +G   LI++T  +     +    N+ +V    L   + L      +Y+ + 
Sbjct: 114  LTLEDLKKYLGH--LILITPSNLHSELKMLQTNNPKVGANYLRKAQDLLPSSSSMYLGVY 171

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
               G   Y  + +  LA    LPL A  +  +L+  +      L A+  +T +   ++  
Sbjct: 172  ADSGQQEYI-NYIRSLATQFNLPLTAVEDGQYLNRNEQFLRRTLQAIKTNTHLENIEQLA 230

Query: 247  RVTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            +    HYLKN  E+  I+   D+ +AL+N  EI + C+  ++   P LP+F +       
Sbjct: 231  KQAGSHYLKNSEELQVIYRKFDIEDALKNAEEIGKICTAEIKFQDPQLPKFKQ------- 283

Query: 305  KEEENELRNKAVAGLEV--RLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
                    NK     E    LAQ  +AK ++ Q    YR+RLD+EL VI  M F  YFLI
Sbjct: 284  --------NKFPTSKEYLHSLAQTGLAKRFNNQIPTKYRERLDYELQVINEMGFDDYFLI 335

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D + +A   +I  GPGRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D
Sbjct: 336  VWDVMNFAHSVHITTGPGRGSAAGSLVSYALRITEVDPIEYNLLFERFLNPARQQMPDID 395

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +D   +RRDEVI+Y+  KYG    AQI+TFG+L AK  L+DV R   +   +  R    I
Sbjct: 396  LDIPDNRRDEVIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAI 455

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P+        +A       +     +     L   ++ LE L RH S HAAG+VI D  L
Sbjct: 456  PHSKGKITLAEAYQKSKELQLLVNTNELSKILFATAEHLENLPRHYSIHAAGLVITDDSL 515

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +++V +       +PVTQ     +E  GL+K DFLGL+ LT+L   +  L   G+ ++ +
Sbjct: 516  AEIVGLQAGPLG-IPVTQQTKSNVESLGLLKIDFLGLRNLTILGNIVAALRADGININPN 574

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD ET  L     T  +FQ ES G+++ LE + PD  EDI+A+ +LYRPGPI+NI 
Sbjct: 575  HIPLDDQETLDLFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPINNID 634

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             + NRK+GKE++    P +  +L  T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM K
Sbjct: 635  HFINRKHGKERVQYPDPSLKKILGTTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSK 694

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  + + +++ +FI GA K G  K  A  +++ +A+FA+YGFN+SHA AY+ I++  A+ 
Sbjct: 695  KNADVIQRERAKFIEGAIKLGRKKETAEKVYDYIAQFANYGFNRSHAVAYSKIAFWLAYF 754

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYP  F  A +   M N  KI ++   A++  I+I+PP +     DF + + +I   L
Sbjct: 755  KVHYPGAFYLALLNSNMGNRNKIAQYLMQAQEAGIKILPPDIENSKTDFSLENGKILVGL 814

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             AI+G+ +   + I+E    +P  S+ DF  ++D+  L+   +E+L+ AG  D    +R 
Sbjct: 815  KAIRGLRSDLLKQILEIK--RPIKSMTDFLWKIDNNLLSADAVENLIKAGTFDRLAPNRN 872

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF--SVENSSVRFENEQR 957
            +LL+   ++ +  +    N +     +F     T   K+  EK   + E S++  E    
Sbjct: 873  ELLKINKDLVESVKMAGSNLS-----LFE----TLEPKVEEEKMPTAAEKSAMEVE---- 919

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             +GF    +P+   +   RK   K  +   +  +G  I +  ++  K    T+KG  + +
Sbjct: 920  AMGFSTGINPIIAVQKYARKFNAKRLQVFESNEQG--IAVGKLIKVK-PITTKKGDNMAF 976

Query: 1018 VTFSEPAKEYEANFFP 1033
              FS+ + E +   FP
Sbjct: 977  AVFSDTSGEKDFTIFP 992


>gi|302335488|ref|YP_003800695.1| DNA polymerase III, alpha subunit [Olsenella uli DSM 7084]
 gi|301319328|gb|ADK67815.1| DNA polymerase III, alpha subunit [Olsenella uli DSM 7084]
          Length = 1302

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 347/1054 (32%), Positives = 525/1054 (49%), Gaps = 100/1054 (9%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC+      D ++   + +        ++LL     GY  LI+ +S+    +   
Sbjct: 126  IKPIFGCEAYFITDDCIERGTKQRRY-----HLILLAKNERGYVNLIKCMSQAAGHEMMY 180

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R  L  L+    EGLI  +    G I +       + A +   TF+ +FGD  Y+ +
Sbjct: 181  YKPRTTLDMLKRY-HEGLICQSACVQGIIQQRVIEGDVEGARQWARTFQDVFGDDFYMEI 239

Query: 187  QRH-----RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            Q H      G+ DR  +  ++++A    + +V TN+  +L+ ED    D+L  +  +T +
Sbjct: 240  QDHGLEFPNGWNDRKLDEYLIKIADELGVKVVCTNDIHYLTREDASTQDILSCIGKATTI 299

Query: 241  SQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                R R+   + Y+K+  EM  +FS  P+A +NT+E+A +C + L  ++  LP F    
Sbjct: 300  DDNSRMRMEGTEFYMKSEEEMRQLFSWYPQACDNTLEVADKCDYELDWNSMYLPEF---- 355

Query: 300  CDDIQKEE--ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               ++K E  E   R +   GL  R  +G         + R R + E  +I    F+ YF
Sbjct: 356  -PGLRKGETAEERFREECERGLAKRYGEGWRDLEIGGWNVRDRFEHEYKIITEKGFANYF 414

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV D++QWAK N I VGPGRGS AG++ AYA+ IT+ DPL   L+FERFL+P R  MPD
Sbjct: 415  LIVQDYVQWAKDNGIGVGPGRGSAAGAIVAYAMNITNFDPLENGLMFERFLSPQRSEMPD 474

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  +    V+++V++ YG +RV ++IT+ +++AK A+ D  R L  P     RL K
Sbjct: 475  IDMDFDDEHLQMVLQHVRDVYGEDRVCKVITYSTIKAKQAINDANRVLGFPVYMGQRLSK 534

Query: 478  LIPNDPA-------HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            ++ NDP        H    +       F EA   D    R+++ +  +EG  R    HA 
Sbjct: 535  MLSNDPKLTLPNALHKNEKKPDQYSPDFEEAYNKDADAHRIIDAALSIEGFMRGEGVHAC 594

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL- 589
              +I   P++  VP   D + ++ +TQ+    +   GL+K DFLGL+TLT++ K+L+ + 
Sbjct: 595  ATLIAPTPVTDHVPTKLDTKGNVTITQYEGHSVADMGLLKMDFLGLRTLTVINKALENIR 654

Query: 590  ----------------------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
                                      V +D+    F D   Y LL +  T G+FQ+ES+G
Sbjct: 655  RSYPDLSRADELPEQVRSAIKPGATCVDLDVDKCDFSDPAIYELLGSGHTAGVFQVESAG 714

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
            M   ++GMQP   + I+AL++LYRPGP+   +V  Y NR NGKE +V     +  +L ET
Sbjct: 715  MTATIKGMQPTEYKHIVALIALYRPGPLGAGMVTSYINRMNGKEPVVFYDDRLSDILDET 774

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEAD--VLRRAMGKKIK--------EEMDKQKE----R 731
             G ++YQEQVMQI+  +S +S  E+D  + +    KKIK         E D   E     
Sbjct: 775  YGTMVYQEQVMQISMKMSNFSPGESDGRIRKPVAKKKIKMLTSQVFHWEGDGADETIYDH 834

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +++GA  NG  + +A  I++ + +FA Y FNKSH+A YA++  QTAW+K+H+P EF+A+ 
Sbjct: 835  WMNGALGNGYQRDVAQRIWDDVLEFASYAFNKSHSAGYAILVMQTAWLKSHFPREFMASV 894

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            +T  M   +KI  +    R+  I ++PP VN    DF      + +  A I+GVG     
Sbjct: 895  LTSYMGKTDKIVHYVTSCRREGIDVLPPDVNESGKDFTATPQGVRFGFAGIRGVGDGVGE 954

Query: 852  HIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD---- 906
             IM E  A  PF SL DFC RVD  + NRRV+E+L+ +GA D  GY R QL+  +D    
Sbjct: 955  AIMAEREARGPFKSLHDFCERVDGSQANRRVVEALIKSGAFDSTGYPRKQLMGFVDKNDP 1014

Query: 907  -NIQKYAQWVEKNRTNKHE---NIFAHEKGT-FSDKITLEKFSVE-NSSVRFENEQRVLG 960
             NI   A   +K++ N      ++FA   G  F D I       E + + +   E  VLG
Sbjct: 1015 ANIIDAAAKRQKDKANGQVSMFDMFADVAGAGFEDDIPEPNPHDEWDRNTKLAQEHEVLG 1074

Query: 961  FYFSGHPLDVYKPILRKMGIKGYE--------------ESVATIR-----GNNIRLAAM- 1000
             Y S HPL  Y+  + K   + Y                  AT R     G  IRLA M 
Sbjct: 1075 IYVSDHPLRPYEYAISKA--RDYTLSEIEESEEVVDPVSGAATTRYKVPEGKPIRLAGMV 1132

Query: 1001 -VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             V    +K T+KG ++  VT  +   E     FP
Sbjct: 1133 PVGGVVKKVTKKGDQMAIVTLEDMEGEVTLVVFP 1166



 Score = 41.2 bits (95), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 29/45 (64%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          +FVHL  HS +S+L+GA  + +++ +    + PA+A+TD   LF 
Sbjct: 2  AFVHLHNHSDFSILDGATPVESLVKRAVDLKMPAVALTDHGYLFG 46


>gi|323340850|ref|ZP_08081101.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus ruminis
            ATCC 25644]
 gi|323091701|gb|EFZ34322.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus ruminis
            ATCC 25644]
          Length = 1120

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 360/1073 (33%), Positives = 564/1073 (52%), Gaps = 120/1073 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ-P 69
            F  LQV S+YSLL+  L +++ ++  +     A+ +TD + L+ A EF +     GI+ P
Sbjct: 2    FAPLQVKSAYSLLQSPLKISDYVEAASKMGYEALCLTDVDVLYGAFEFFEACRKYGIKKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL---LD--- 123
            +IG +L++          QG      + S++LL   A GY+ L+++ S       LD   
Sbjct: 62   VIGIELNM----------QGDGEEEPI-SLLLLAKNAAGYRNLVKISSNKLSENSLDPHD 110

Query: 124  --QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FG 179
              Q    ++ CL        +G+ ++    S  +  +  F            FKKL   G
Sbjct: 111  NPQTCDDIKDCL--------DGVAVIVSPESIKVASSPKF------------FKKLQSNG 150

Query: 180  DRLYVN----LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             +LY+       R    D YR      +A T ++P +A +   +L  +DY    VL A+ 
Sbjct: 151  AKLYLGKGPQFSRELLLDAYR------IAETLKIPQIALSKVEYLKPDDYFGQVVLQAID 204

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILP 293
                ++   R  ++   YLK+ SE    + +  +      T ++     F L      LP
Sbjct: 205  ADERINFDQR--MSGSEYLKSPSEYQIDYKNAGMETEFGQTEKLLSEIDFWLTPSEISLP 262

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVI 348
             +         K ++   +  A   L+ RL    I + +         Y++RLD EL VI
Sbjct: 263  HY---------KFQKGVAKVSAHDYLK-RLCADGIKRCFRENPDKIDIYQKRLDHELKVI 312

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
              M F  YFLIV+   Q+A+   I VGPGRGS AGS+ +Y L ITD+DP++++LLFERFL
Sbjct: 313  HEMGFEDYFLIVSGITQYARSVGIIVGPGRGSAAGSLVSYVLRITDVDPIKYNLLFERFL 372

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            N +R  MPD D+D   ++RD +I+YV + YG   +AQIITF +  AK ALRD  R   + 
Sbjct: 373  NEERHEMPDIDLDIPDNKRDRIIKYVYDTYGSRHMAQIITFDTFGAKQALRDGCRIFGLT 432

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
             ++ D   K IP      +  +A  +  R R         +RL E +QKLEGL RH STH
Sbjct: 433  QAETDAWSKAIPFGDKMTLE-RARRESQRIRNLIADSKRNERLFETAQKLEGLPRHFSTH 491

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            AAGIV+ D+ L ++VP+   + +D   +TQF+ K +EKAGL+K D LGLK L +L  + D
Sbjct: 492  AAGIVLSDQNLDEVVPV--QIGNDGYLMTQFSKKPVEKAGLLKIDLLGLKNLRILNTAKD 549

Query: 588  FLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             + Q +  K+DL  IP DD  T  L     T GIFQ +S G+RQA+  ++P+  ED++AL
Sbjct: 550  LVNQNKASKLDLEQIPLDDKATLELFYNAKTEGIFQFDSYGIRQAMLKIRPENFEDVVAL 609

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
             +LYRPGPI NI  +  R++G++ +     +++P+L  T G+I+YQEQ MQ++  + G++
Sbjct: 610  NALYRPGPIRNIDEFTARRHGRKTVSYPAKVLEPILNSTYGIIVYQEQAMQVSSKMGGFT 669

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L EAD+LR+A+ KK  E +++ + +F++GA K G SK  A+ +++ + +F +YGFN+SHA
Sbjct: 670  LGEADILRQAISKKEHETIERMRVKFVAGAQKKGFSKEDALRVYDYIERFGEYGFNRSHA 729

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
             AY+ +++Q A++K HYP EF  A ++  + NVEK + F   A++  I+I+ P +N    
Sbjct: 730  VAYSKMAFQMAYLKAHYPAEFYCALLSTVIGNVEKTQSFLAAAKKRKIKILAPDINKSSY 789

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIM---EASADKPFDSLEDFCSRV----------- 872
            DF++ D  I +   ++KG+     R I+    A   +PF SL+DF +R+           
Sbjct: 790  DFRISDGGIMFGFLSVKGIRFDFIRQILAERHAGGYRPFKSLDDFMNRMVERALVDKHDH 849

Query: 873  --DSKKLN------RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              D+KK        R ++E+L++ GA D     R QLL  LD + KY Q          E
Sbjct: 850  DGDAKKREKIAKSYRPIVETLIYVGAFDSLEADRSQLLNRLDVLVKYDQL--SMSVPLLE 907

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            ++F   K     K+TL++        R E E+  LG Y S HPLD Y    + +G     
Sbjct: 908  SLFVPSKKNVR-KLTLDE--------RLEKEKERLGVYLSAHPLDKYSAFAQGIG----A 954

Query: 985  ESVATIRGNNIRLAAMVVSK----QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             S+A++  +     A+V+ +    ++ KT+KG  + +V+  +   E EA FFP
Sbjct: 955  SSLASLVPDQ---QAIVLVRIKEIKKIKTKKGDEMAFVSCIDQTGEMEATFFP 1004


>gi|296140319|ref|YP_003647562.1| DNA polymerase III subunit alpha [Tsukamurella paurometabola DSM
           20162]
 gi|296028453|gb|ADG79223.1| DNA polymerase III, alpha subunit [Tsukamurella paurometabola DSM
           20162]
          Length = 1183

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 347/1010 (34%), Positives = 543/1010 (53%), Gaps = 69/1010 (6%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFVHL  H+ YS+L+GA  ++ +  +       A+ ++D  N+F A +F   A    I+P
Sbjct: 6   SFVHLHNHTEYSMLDGAAKVDPLFAEAKRLGMTAVGMSDHGNMFGASDFYNTAVKYDIKP 65

Query: 70  IIGCQLDIDMQD--NLKMTNQGKTPFPTVPS-----------IVLLVSTAEGYQRLIELV 116
           IIG +  I  +   N K    G    P+  S           + ++   A G + L +L 
Sbjct: 66  IIGIEAYIAPESRFNTKRVRWGD---PSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLS 122

Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
           S   +  Q  +  R+    + E   EG+I  TG  SG +         Q A +    +++
Sbjct: 123 SLASIEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHEQEALEAAAKWQE 181

Query: 177 LFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
           +FG +  Y+ L  H G D   R RE  ++++     +  +ATN+  +++++  E+H  L+
Sbjct: 182 IFGKENFYLELMDH-GIDIERRVREG-LLEIGRKLGIKPLATNDCHYVTKDKAESHGALL 239

Query: 233 AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQV--H 288
            +     +S   R +   D +YLK+  EM  ++ + +P A ++TVEI  R     +V  H
Sbjct: 240 CIQTGKTLSDPTRFQFDGDGYYLKSAQEMRELWDAQVPGACDSTVEIGERVQSYKEVWEH 299

Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              +PRF   E       +E+ L ++ + GL  R   G         DY +R  +EL+VI
Sbjct: 300 KDRMPRFPVPE----NHTQESFLESEVMDGLNRRFPDGP------PPDYVERARYELSVI 349

Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             M F  YFL+V D I  A +  I VGPGRGS AGS+ A+AL IT+IDP+   LLFERFL
Sbjct: 350 NEMGFPAYFLVVGDLIAHAHEVGIRVGPGRGSAAGSLVAWALGITNIDPIPHGLLFERFL 409

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--Q 466
           NP+R+SMPD DIDF   RR E+I Y   K+G ++VAQ+ITFG+++ KAA++D  R +  Q
Sbjct: 410 NPERVSMPDIDIDFDDRRRGEMITYASEKWGSDKVAQVITFGTIKTKAAIKDSARVIYGQ 469

Query: 467 MPYSQVDRLCKLIPND-PAHPVSLQAIADDS--RFREARL------ADPSVDRLLEISQK 517
             YS  DR+ K +P    A  +S++ I D +  R++EA         DP V ++ +++  
Sbjct: 470 PGYSIADRITKALPPPIMAKDISVKGITDPAHERYKEAVEVRQLIETDPDVKKIYDMALG 529

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
           LEGL R+A  HA  +++   PL+  +P+++  +    +T ++    E  GL+K DFLGL+
Sbjct: 530 LEGLIRNAGVHACAVIMSCDPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLR 589

Query: 578 TLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            LT++  +L +    RG+ +D+  +P DD  TY LL    TLG+FQL+   MR  L  MQ
Sbjct: 590 NLTVIGDALANIKHNRGIDLDMDQLPLDDETTYQLLQRGNTLGVFQLDGGPMRDLLRRMQ 649

Query: 637 PDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVII 690
           P   EDI+A+ +LYRPGP  ++    Y +RKNG++++  IHP L +P+   L ET G+I+
Sbjct: 650 PTKFEDIVAVGALYRPGPMGVNAHNDYADRKNGRQQVKPIHPELEEPLAEILSETFGLIV 709

Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
           YQEQ+MQIAQ ++GYSL +AD+LRRAMGKK KE +D+    F  G   NG S+     ++
Sbjct: 710 YQEQIMQIAQKVAGYSLGQADLLRRAMGKKKKEILDEAYGGFQQGMLDNGFSQPAITALW 769

Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
           E +  FA Y FNKSHAAAY ++SY TA++K +YP E++AA +T   D+ +K   +  D R
Sbjct: 770 ETVLPFAGYAFNKSHAAAYGLVSYWTAYLKANYPAEYMAALLTSVGDDKDKAAIYLGDCR 829

Query: 811 QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFC 869
           +  I ++PP VN     F      I + + +++ VG      I+    +K  F S  D+ 
Sbjct: 830 RLGITVLPPDVNESFHAFTSVGEDIRFGMGSVRNVGEGVVASIVNTREEKGNFTSFSDYL 889

Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
           ++++    +++V ESL+ AG  D   + R  L     +  +     +K       ++F  
Sbjct: 890 AKIEVAACSKKVTESLIKAGGFDSLEHPRKGLFLVHSDAIESVLSTKKAEAVGQFDLFGS 949

Query: 930 ---EKG-------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
              E G        F+ K+  E++  ++   +   E+ +LG Y S HPLD
Sbjct: 950 MGDEGGGTEPIDDVFTIKVPDEEWDGKH---KLALEREMLGLYVSAHPLD 996


>gi|330998194|ref|ZP_08322020.1| DNA polymerase III, alpha subunit [Paraprevotella xylaniphila YIT
            11841]
 gi|329568886|gb|EGG50684.1| DNA polymerase III, alpha subunit [Paraprevotella xylaniphila YIT
            11841]
          Length = 1316

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 346/1056 (32%), Positives = 549/1056 (51%), Gaps = 106/1056 (10%)

Query: 68   QPIIGCQLDIDMQ--DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            +PI GC++ +  +  D ++    G+        +++L     GY  L++LVS+ +    G
Sbjct: 149  KPIFGCEMYVAPRRLDQMEKEKDGRRY-----HLIVLAKNETGYHNLVKLVSKSWT--DG 201

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                     +  E   EGLI+ +   +G + R       + AE+ +  +K++FGD  Y+ 
Sbjct: 202  FYVRPRTDRFELEAHREGLIICSACIAGEVPRKILSGDLEGAEEAVQWYKRVFGDNYYLE 261

Query: 186  LQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            LQRH   D             +   +++++LA  +++ LV TN+  F+ +ED EAHD L+
Sbjct: 262  LQRHEVKDPDQRANRETFPLQQRANARLIELARKYDVKLVCTNDCHFVEQEDAEAHDRLI 321

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             ++ +  +    R   +   + K R+EM  +F+D+PEAL NT +I  +  F    HAPI+
Sbjct: 322  CLSTNRDLDDPKRMLYSKQEWFKTRAEMNEVFADVPEALANTCDICDQVEFYSIDHAPIM 381

Query: 293  PRFI------------EKECDD--------------IQKEEENELRNKAVAGLE------ 320
            P F             +K  D+              +   E+ E + K + G +      
Sbjct: 382  PNFAIPEEFGTEEGYRKKYTDEDLFEEFTRDENGNVVLSREDAEQKVKKLGGCDKLYRLK 441

Query: 321  ------VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN- 370
                    L     AK Y     +  R+R++FEL+V+  M F GYFLIV D+I  A+   
Sbjct: 442  LEADYLAELTYIGAAKLYGDPLPEHVRERINFELHVMKTMGFPGYFLIVQDYINAARHEL 501

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            N+ VGPGRGS AGS  AY L IT IDP+ + LLFERFLNPDR+S+PD D+DF  D R +V
Sbjct: 502  NVSVGPGRGSAAGSAVAYCLGITKIDPIEYDLLFERFLNPDRISLPDIDVDFDDDGRGKV 561

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-------NDP 483
            + +V  KYG E+VA IIT+G++  K A++DV R  ++P    + LCKLIP       N  
Sbjct: 562  LSWVTQKYGEEKVAHIITYGTMATKLAIKDVARVEKLPLDISNGLCKLIPDKLPDDENGK 621

Query: 484  AHPVSL-QAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +  ++L  AI+     ++A  + +P +   +  ++ LEG  R+   HA G++I    +S 
Sbjct: 622  SRKMNLPNAISCIPELQQAEASPNPLLRDTIRYARMLEGNVRNTGVHACGVIICRDDVSD 681

Query: 542  LVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKV 596
             VP+     ++    L  TQ+    IE  GLIK DFLGLKTL+++++   +     G+++
Sbjct: 682  WVPVSTAEDKETGEKLRCTQYEGSVIEDTGLIKMDFLGLKTLSIIKECQANIYDSLGMEI 741

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+  +   D  TY L     T+G FQ ES GM++ L  +QP   ED+IA+ +LYRPGP+D
Sbjct: 742  DVDALDITDPATYRLYCDGRTIGTFQFESPGMQKYLRELQPSTFEDLIAMNALYRPGPMD 801

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I  + +RK G++ +    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+D LR+A
Sbjct: 802  YIPDFIDRKQGRKPVEYDIPCMEKYLKDTYGITVYQEQVMLLSRQLADFTRGESDTLRKA 861

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK+ E+++    +FI G  KNG    +   I+    KFA Y FNKSHA  Y+ ++YQT
Sbjct: 862  MGKKLIEKLNHMYPKFIEGGKKNGHDPKVLEKIWADWKKFASYAFNKSHATCYSWVAYQT 921

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRI 835
            A++K ++P +++AA M+  + N+  I K   + +   I  + P VN     F V  D  I
Sbjct: 922  AYLKANFPAQYMAAVMSRSLANITDITKLMSECKSIGINTLGPDVNISRRKFSVDVDGNI 981

Query: 836  YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L A+KG+G +    I+ E  A  P+ ++ DF  RV S  + R  LESLV +GA DCF
Sbjct: 982  RFGLGAVKGLGDSAVDAIVKEREAHGPYKNIFDFIQRVPSGAVKRNNLESLVLSGAFDCF 1041

Query: 895  -GYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE--- 946
             G +R Q      +    I + A++  + +T+K     A +   F D   +E  + E   
Sbjct: 1042 EGITREQYFGVNAKGESFIDQLARYGSRYQTDKD----AVQNSLFGDMDMVEIATPEVPQ 1097

Query: 947  ----NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM------GIKGYEESVATIRGNNIR 996
                +S  R   E+ ++G Y S HPLD Y  IL+ +       +K  E+ V      ++ 
Sbjct: 1098 AEPWSSLERLNKERDLVGIYLSAHPLDDYAVILQNVCNVHMADLKDLEQFVNM----DLT 1153

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            L  MV + ++  ++ G   G VT  +    YE   F
Sbjct: 1154 LGGMVTAVRKGISKTGKPYGIVTMEDFTGAYELALF 1189



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          FVHL VH+ YS+L+G  S++ ++DK   D    +AITD  N+ +  EF
Sbjct: 4  FVHLHVHTQYSILDGQASVSRLVDKAMKDGMRGMAITDHGNMMAIKEF 51


>gi|111018082|ref|YP_701054.1| DNA polymerase III subunit alpha [Rhodococcus jostii RHA1]
 gi|110817612|gb|ABG92896.1| DNA-directed DNA polymerase III alpha subunit [Rhodococcus jostii
            RHA1]
          Length = 1178

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 348/1071 (32%), Positives = 566/1071 (52%), Gaps = 65/1071 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  +  + ++       A+ +TD  N++ A EF  +A   GI+P
Sbjct: 4    SFVHLHNHTEYSMLDGAAKVGPLFEEAERLGMSAVGMTDHGNMYGASEFYNEAKKQGIKP 63

Query: 70   IIGCQLDIDMQD--NLKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  I  +   N K    G         +       + ++   A G + L +L S  
Sbjct: 64   IIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSSLA 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +  Q  +  R+    L     EG+I  TG  SG I         + A +    +++++G
Sbjct: 124  SIEGQLGKWARMDEE-LIATHHEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEIWG 182

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +R     +++++   E+P +ATN+  ++++E  E H+ L+ +   
Sbjct: 183  KDNFFLELMDHGLSIERRVREGLLEISKKLEIPPLATNDCHYVTKEAAENHEALLCIQTG 242

Query: 238  TVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQV--HAPILP 293
              +S   R +   D +YLK  +EM +++ D +P A +NT+ IA R      V  H   +P
Sbjct: 243  KTLSDPTRFKFDGDGYYLKPAAEMRALWDDQVPGACDNTLLIAERVQSYDDVWAHHDRMP 302

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             F   E +     +   LR + + GL+ R   G        ++Y  R D+E+ VI  M F
Sbjct: 303  IFPVPEGE----TQGTWLRKEVMRGLDRRFPDGP------PEEYLARADYEIGVILEMGF 352

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL+V D I  A++  I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R+
Sbjct: 353  PAYFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERV 412

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471
            SMPD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAA++D  R    Q  ++ 
Sbjct: 413  SMPDIDIDFDDRRRGEMVRYATDKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFAI 472

Query: 472  VDRLCKLIPND-PAHPVSLQAIADDS--RFREARL------ADPSVDRLLEISQKLEGLY 522
             D++ K +P    A  +S+  I D +  R++EA        ++P V ++ + ++ LEGL 
Sbjct: 473  ADQITKALPPPIMAKDISVSGITDPNHERYKEAVEVRALIDSNPDVAKIYQTAKGLEGLI 532

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R+A  HA  +++   PL   +P+++  +    +T ++    E  GL+K DFLGL+ LT++
Sbjct: 533  RNAGVHACAVIMSSEPLMDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVI 592

Query: 583  QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++D + A RG+ +DL  +  DD  TY LL+   TLG+FQL+ S MR  L  MQP   E
Sbjct: 593  GDAIDNIKANRGIDLDLDTLALDDQATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFE 652

Query: 642  DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            DI+A+++LYRPGP+       Y +RKNG++++  IHP ++  LKE    T G+I+YQEQ+
Sbjct: 653  DIVAVLALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKEILADTYGLIVYQEQI 712

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQIAQ ++GYSL +AD+LRRAMGKK    +++    F  G   N  S+     +++ +  
Sbjct: 713  MQIAQKVAGYSLGQADILRRAMGKKKLSVLEEAYAGFREGMLANEFSEPAIKALWDTILP 772

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSHAA Y ++S+ T ++K +YP E++A  +T   D+ +K   +  D R+  I 
Sbjct: 773  FAGYAFNKSHAAGYGLVSFWTGYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKMGIT 832

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDS 874
            ++PP VN   V+F      I + + A++ VG      I++A  +K  F    D+ +++D+
Sbjct: 833  VLPPDVNESEVNFASVGEDIRFGMGAVRNVGANVVGSIIKARKEKSKFVDFSDYLNKIDA 892

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-- 932
               +++V ESL+ AG  D  G+ R  L+    +        +K       ++F  +    
Sbjct: 893  AACSKKVTESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAIGQFDLFGGDDADE 952

Query: 933  ----TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
                 F+ KI  E++   +S  R   E+ +LG Y SGHPL+  + +L        + ++ 
Sbjct: 953  SISSVFNVKIPDEEW---DSKHRLALEREMLGLYVSGHPLNGVEHVLSAQS----DTAIP 1005

Query: 989  TI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            TI       G  + +  ++ S  ++  + G         +     E  FFP
Sbjct: 1006 TILEGDIKDGTQVTVGGILASVNRRINKNGLTWASAQLEDLTGGIEVLFFP 1056


>gi|170017064|ref|YP_001727983.1| DNA polymerase III, alpha subunit [Leuconostoc citreum KM20]
 gi|169803921|gb|ACA82539.1| DNA polymerase III, alpha subunit [Leuconostoc citreum KM20]
          Length = 1113

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 346/1039 (33%), Positives = 544/1039 (52%), Gaps = 69/1039 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQ+ S+YSLL+   ++  I+         AIA+TD N ++ A+EF QKA   GI+P+
Sbjct: 2    YAPLQILSAYSLLKNPNTITQIIRTAKDRHYGAIALTDINVMYGAVEFYQKAKDMGIKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L ++   N   T      FP    +VL+     GYQ L+ L S          +  
Sbjct: 62   FGVTLQVNGLVNTSTT------FP----LVLIAENQTGYQNLMWLSSAKMTAQDTTMTFD 111

Query: 131  ICLSWLQEIGT-----EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            + +  LQ I         L  L       +D  +   S+++ ++ L           Y+ 
Sbjct: 112  LLVDHLQGIHVILPHDSELSQLIASEYQEVDNYWHQLSNKIDDQHL-----------YIG 160

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKD 244
            +  H        +++ Q +  H+  LVA ++  +L+ +D     VL A+ A+  +   K 
Sbjct: 161  I--HPQLAPQIRARLAQFSQIHQASLVALDDVDYLNADDAFTTQVLKAIDANVKLDGIKA 218

Query: 245  RPRVTPDHYLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQV-HAPILPRFIEKEC 300
              + +  H L +  ++   + D   L  A +N  ++  R    L       LP F     
Sbjct: 219  LAQQSGSHVLVDFEQLRQSYQDDEALKLAFKNNEQLVARSHVSLTFKQTTALPPF----- 273

Query: 301  DDIQKEEENE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
              +  E  N    L+N A+ GL  ++    I    HAQ Y +RL  EL +I ++ F+ YF
Sbjct: 274  -QLPAETANAAEYLKNLAMTGLNAKMH---ITSQQHAQ-YLERLHNELAIINKLGFNDYF 328

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV D + +AK+N+I +G GRGS AGS+ A++L ITDIDP++F LLFERFLN +R+ MPD
Sbjct: 329  LIVWDIVNFAKQNHIQLGVGRGSAAGSLVAFSLGITDIDPVKFGLLFERFLNAERVQMPD 388

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             DID+  +RR++V+ Y+  KYG    AQIITFG+L AK ALRD  R   +  + + R+  
Sbjct: 389  IDIDWPDNRREDVLAYLHQKYGQRNFAQIITFGTLAAKQALRDTARVFGVSQTMMSRISN 448

Query: 478  LIPNDP-AHPVSLQAIADDSRFREARLAD-PSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             +P       V++     DS      L D  + D LL+ +QK+EGL R+ STHAAG+V+ 
Sbjct: 449  AVPQGKQGRRVTIGEALKDSDALSRVLGDIDNGDLLLKTAQKIEGLPRNYSTHAAGVVLS 508

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
            D PL   +P+     S L +TQF    +E  GL+K D LGL  LT+L ++L +  Q    
Sbjct: 509  DSPLVNTLPVQSGSESRL-LTQFEKNPVEALGLLKIDILGLSNLTILAQTLYYAKQYLPD 567

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            + D+  +P DD  T  L     T G+FQ ESSG++  L+ +QP   E I+A+ +LYRPGP
Sbjct: 568  RFDIGHVPLDDKATLALYAKGDTNGVFQFESSGIKHVLKQLQPATFEHIVAVNALYRPGP 627

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
              NI  +  R++G+E +  + P +  +L  T G+I+YQEQVM +A+  +G++L EADVLR
Sbjct: 628  SRNIESFIKRRHGQETVTVLDPSLKTILAPTFGIIVYQEQVMLVAEKYAGFTLGEADVLR 687

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
             AM KK   +M     +FISGA   G  ++ A  IF  + +FA+YGFN+SHA AY+ +S+
Sbjct: 688  SAMSKKKLAQMADMHGKFISGAVSQGHDQSQAEQIFAYIDEFANYGFNRSHAVAYSKLSF 747

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            Q A+MK HYP+ F  A +   + + +KI+ +  +A+   I +  P+VN     + +  + 
Sbjct: 748  QLAYMKVHYPIAFFTALLNANLGSPDKIRLYVTEAKARGIVVKAPNVNQSDRFWTINKDF 807

Query: 835  IYYSLAAIKGVGTT-TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +   L +IKGV T   A  I E   + PF+S++    R+  K   R VL  +V+AGALD 
Sbjct: 808  LQMGLHSIKGVRTDFVAALIDERKNNGPFESIQSLVRRLPEKFRKRDVLTQMVYAGALDS 867

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FGY+R++L+ +LD++ + A + E         I +  K      ITL +        +  
Sbjct: 868  FGYNRVELVTALDDLIEAASFGEL--------ILSETKIKKMADITLTE--------KLV 911

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            +E+  +G   SGHPLD +  I+++   +   +   ++    +++  M+ S +Q +T+KG 
Sbjct: 912  HEKETIGVNLSGHPLDTFASIIKQNDFQQIAD--VSLAKEPVKMIVMIDSVRQTRTKKGE 969

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + +VT S+         F
Sbjct: 970  TMAFVTVSDTTGTISLTIF 988


>gi|56751907|ref|YP_172608.1| DNA polymerase III subunit alpha [Synechococcus elongatus PCC 6301]
 gi|56686866|dbj|BAD80088.1| DNA polymerase III alpha subunit [Synechococcus elongatus PCC 6301]
          Length = 870

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 306/773 (39%), Positives = 454/773 (58%), Gaps = 40/773 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA--AGI 67
           SFV L +HS YSLL+GA  L +++ +      PAIA+TD   ++ A+E   K C     I
Sbjct: 2   SFVGLHMHSDYSLLDGASQLPDLVARAKELGMPAIALTDHGVMYGAIELL-KVCKNQGNI 60

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI--VLLVSTAEGYQRLIELVSRMYLLDQG 125
           +PIIG ++ +       + +    P P V     ++L    +GYQ L++L S  +L  QG
Sbjct: 61  RPIIGNEMYV-------INSPIDDPNPRVRKYHPIVLAKNKKGYQNLVKLTSISHL--QG 111

Query: 126 KQS----VRICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            +      R C+     E   EGLI+ +    G I +A   +   VA +    +++ FG+
Sbjct: 112 FKGRGIFARPCIDKEHLEKYREGLIVTSACLGGEIPQAILQSRPDVARRVAAWYQERFGE 171

Query: 181 RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y+ +Q H    DR    ++V++A    + LVATN+S F+S  D EAHD L+ +    +
Sbjct: 172 DFYLEIQDHGSPEDRIVNVEIVRIAQELGIELVATNDSHFISCFDVEAHDALLCIQTGKL 231

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSD-LPE-----ALENTVEIARRCSFILQVHAPILP 293
           V +  R R +   YLK+  EM  +F D LP+     A+ NT+ IA +      +  P +P
Sbjct: 232 VVEDKRLRYSGTEYLKSAEEMHQLFRDHLPDDVIAKAIANTLVIASKIEDYNILGEPKIP 291

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            F   +       EE  +   A  GL  RL          A  YR RL++E+ ++  M F
Sbjct: 292 TFPVPD----GYNEETYMAEVARQGLAERLNCDRYEDCEEA--YRDRLEYEIKMMHEMGF 345

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
           + YFL+V D+I++A+ NNIPVGPGRGS AGS+ AY + IT+IDP+   LLFERFLNP+R 
Sbjct: 346 ASYFLVVWDYIKFARDNNIPVGPGRGSAAGSLVAYCMGITNIDPVHHGLLFERFLNPERK 405

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
           SMPD D DFC D+RD+VI YV  KYG +RVAQIITF  + +KA L+DV R L +PY + D
Sbjct: 406 SMPDIDTDFCIDQRDKVIDYVTKKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEAD 465

Query: 474 RLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
           R+ KLIP     P  L+ +  D      F+E    D  V   ++++ ++EG  +    HA
Sbjct: 466 RMAKLIPVARGKPAKLKVMISDQTPAPEFKEKYEKDARVKHWVDMALRIEGTNKTFGVHA 525

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
           AG+VI   PL ++VP+ R+    + +TQ+ M+ IE  GL+K DFLGL+ LT++QK++D +
Sbjct: 526 AGVVISAVPLDEIVPLQRNNDGQV-ITQYYMEDIEACGLLKMDFLGLRNLTMIQKAIDLV 584

Query: 590 AQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            +  G  +D   +P DD +TY LL      G+FQLESSGMRQ +  ++P  +EDI ++++
Sbjct: 585 QETSGQAIDPDRLPMDDPKTYQLLAKGDLEGVFQLESSGMRQIVRDLKPSNLEDISSILA 644

Query: 649 LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
           LYRPGP+D  ++  + NRK+G+E I     ++ P+L ET G+++YQEQ+M+IAQ + GY+
Sbjct: 645 LYRPGPLDAGLIPKFINRKHGREAIDYADQMLQPILNETYGIMVYQEQIMKIAQDMGGYT 704

Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
           L EAD+LRRAMGKK   EM K +  F+ GA KNG+++ +A  +F+ +  FA+Y
Sbjct: 705 LGEADLLRRAMGKKKMSEMVKHQSTFVEGAKKNGVAEKVAAELFDQMVLFAEY 757


>gi|119512710|ref|ZP_01631782.1| DNA polymerase III subunit alpha [Nodularia spumigena CCY9414]
 gi|119462630|gb|EAW43595.1| DNA polymerase III subunit alpha [Nodularia spumigena CCY9414]
          Length = 876

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 314/812 (38%), Positives = 471/812 (58%), Gaps = 64/812 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D   +    AIA+TD   ++ A+E  +   +  I+P
Sbjct: 2   SFVPLHIHSDYSLLDGASQLPELVDHAISLGMKAIALTDHGVMYGAVELIKICRSKSIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQS 128
           IIG ++ I   D  K   + K         V+L    +GY+ L+++ +  +L   QGK  
Sbjct: 62  IIGNEMYIINGDFTKQERRPKY------HQVVLAKNTQGYKNLVKITTISHLDGVQGKGI 115

Query: 129 V-RICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R C++  L +   EGLI+ +    G I +A   N    A K    +K++FGD  Y+ +
Sbjct: 116 FSRPCINKDLLKQYREGLIVTSACLGGEIPQAILSNRPDAARKIAKWYKEIFGDDYYLEI 175

Query: 187 QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           Q H    DR    ++V++A    +  +ATN+S F+S  D EAHD L+ +    ++S+  R
Sbjct: 176 QDHGSQEDRIVNVEIVKIARELNIKFIATNDSHFISCFDVEAHDALLCIQTGQLISEDKR 235

Query: 246 PRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCSFILQVHAPILPR--FIE 297
            R +   YLK+  EM  +F D LP     EA+  T E+A +      +  P +P      
Sbjct: 236 MRYSGTEYLKSADEMKQLFRDHLPDDIIAEAIATTEEVADKVGVYDIMGDPQIPTPPIPS 295

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               D   EE       A  GL  RL + + ++      Y++RL++EL ++  M FS YF
Sbjct: 296 GHTPDTYAEE------VAWNGLLERLNRKSRSEVDPV--YKERLEYELKMLQTMGFSTYF 347

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           L+V D+I++A+ NNIPVGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R SMPD
Sbjct: 348 LVVWDYIKFARDNNIPVGPGRGSAAGSLVAYAMKITNIDPVHHGLLFERFLNPERKSMPD 407

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D DFC ++RD+VI YV  KYG +RVAQIITF  L +KA L+DV R L +PY + D++ K
Sbjct: 408 IDTDFCIEKRDKVIEYVTEKYGKDRVAQIITFNRLTSKAVLKDVARVLNIPYGEADKMAK 467

Query: 478 LIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
           LIP     P  L+ +  D      F+E    +  V   L+++ ++EG  ++   HAAG+V
Sbjct: 468 LIPVVRGKPTKLKVMISDKTPAPEFKERYDNNAHVRHWLDMAIRIEGTNKNFGVHAAGVV 527

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
           I   PL ++VP+ R+    + +TQ+ M+ +E  GL+K DFLGL+ LTL+Q+++D + + +
Sbjct: 528 ISADPLDEIVPLQRNNDGSV-ITQYFMEDLESMGLLKMDFLGLRNLTLIQRTIDLIEETK 586

Query: 593 GVKVD-------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
           G ++D                    S +P D  ++Y LL      GIFQLESSGMRQ + 
Sbjct: 587 GYRIDPDEITGQERKAQKILAKGEHSNLPKDVKKSYELLEAGELEGIFQLESSGMRQIVR 646

Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            ++P  IEDI ++++LYRPGP+D  ++  + NRK+G+E I     +++P+L ET G+++Y
Sbjct: 647 DLKPSNIEDISSILALYRPGPLDAGLIPKFINRKHGREAIDYQSAILEPILNETYGIMVY 706

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QEQ+M+IAQ ++GYSL +AD+LRRAMGKK   EM KQ+E+F+ GA+KNG+ K +A  +FE
Sbjct: 707 QEQIMKIAQDMAGYSLGQADLLRRAMGKKKVSEMQKQREKFVDGAAKNGVKKQVADELFE 766

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            + KFA+Y            +SY T  +   Y
Sbjct: 767 QMLKFAEY-----------CLSYDTEILTVEY 787


>gi|81301008|ref|YP_401216.1| DNA polymerase III subunit alpha [Synechococcus elongatus PCC 7942]
 gi|81169889|gb|ABB58229.1| DNA polymerase III, alpha subunit / Intein [Synechococcus elongatus
           PCC 7942]
          Length = 870

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 306/773 (39%), Positives = 454/773 (58%), Gaps = 40/773 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA--AGI 67
           SFV L +HS YSLL+GA  L +++ +      PAIA+TD   ++ A+E   K C     I
Sbjct: 2   SFVGLHMHSDYSLLDGASQLPDLVARAKELGMPAIALTDHGVMYGAIELL-KVCKNQGNI 60

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI--VLLVSTAEGYQRLIELVSRMYLLDQG 125
           +PIIG ++ +       + +    P P V     ++L    +GYQ L++L S  +L  QG
Sbjct: 61  RPIIGNEMYV-------INSPIDDPNPRVRKYHQIVLAKNKKGYQNLVKLTSISHL--QG 111

Query: 126 KQS----VRICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            +      R C+     E   EGLI+ +    G I +A   +   VA +    +++ FG+
Sbjct: 112 FKGRGIFARPCIDKEHLEKYREGLIVTSACLGGEIPQAILQSRPDVARRVAAWYQERFGE 171

Query: 181 RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y+ +Q H    DR    ++V++A    + LVATN+S F+S  D EAHD L+ +    +
Sbjct: 172 DFYLEIQDHGSPEDRIVNVEIVRIAQELGIELVATNDSHFISCFDVEAHDALLCIQTGKL 231

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSD-LPE-----ALENTVEIARRCSFILQVHAPILP 293
           V +  R R +   YLK+  EM  +F D LP+     A+ NT+ IA +      +  P +P
Sbjct: 232 VVEDKRLRYSGTEYLKSAEEMHQLFRDHLPDDVIAKAIANTLVIASKIEDYNILGEPKIP 291

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            F   +       EE  +   A  GL  RL          A  YR RL++E+ ++  M F
Sbjct: 292 TFPVPD----GYNEETYMAEVARQGLAERLNCDRYEDCEEA--YRDRLEYEIKMMHEMGF 345

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
           + YFL+V D+I++A+ NNIPVGPGRGS AGS+ AY + IT+IDP+   LLFERFLNP+R 
Sbjct: 346 ASYFLVVWDYIKFARDNNIPVGPGRGSAAGSLVAYCMGITNIDPVHHGLLFERFLNPERK 405

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
           SMPD D DFC D+RD+VI YV  KYG +RVAQIITF  + +KA L+DV R L +PY + D
Sbjct: 406 SMPDIDTDFCIDQRDKVIDYVTKKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEAD 465

Query: 474 RLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
           R+ KLIP     P  L+ +  D      F+E    D  V   ++++ ++EG  +    HA
Sbjct: 466 RMAKLIPVARGKPAKLKVMISDQTPAPEFKEKYEKDARVKHWVDMALRIEGTNKTFGVHA 525

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
           AG+VI   PL ++VP+ R+    + +TQ+ M+ IE  GL+K DFLGL+ LT++QK++D +
Sbjct: 526 AGVVISAVPLDEIVPLQRNNDGQV-ITQYYMEDIEACGLLKMDFLGLRNLTMIQKAIDLV 584

Query: 590 AQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            +  G  +D   +P DD +TY LL      G+FQLESSGMRQ +  ++P  +EDI ++++
Sbjct: 585 QETSGQAIDPDRLPMDDPKTYQLLAKGDLEGVFQLESSGMRQIVRDLKPSNLEDISSILA 644

Query: 649 LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
           LYRPGP+D  ++  + NRK+G+E I     ++ P+L ET G+++YQEQ+M+IAQ + GY+
Sbjct: 645 LYRPGPLDAGLIPKFINRKHGREAIDYADQMLQPILNETYGIMVYQEQIMKIAQDMGGYT 704

Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
           L EAD+LRRAMGKK   EM K +  F+ GA KNG+++ +A  +F+ +  FA+Y
Sbjct: 705 LGEADLLRRAMGKKKMSEMVKHQSTFVEGAKKNGVAEKVAAELFDQMVLFAEY 757


>gi|223043605|ref|ZP_03613650.1| DNA polymerase III, alpha subunit [Staphylococcus capitis SK14]
 gi|222443093|gb|EEE49193.1| DNA polymerase III, alpha subunit [Staphylococcus capitis SK14]
          Length = 1067

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 339/1030 (32%), Positives = 548/1030 (53%), Gaps = 95/1030 (9%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL +H++Y LL  +L + ++++K   +   A+AITDT+ L+   +F     A  I PI G
Sbjct: 4    HLNIHTAYDLLNASLKIEDVVNKAKNEGYRALAITDTHVLYGFPKFYDACIAKDIHPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              + I + D L           TV ++VL     EG + L +L S + +    K+   + 
Sbjct: 64   --MTISLTDGLY----------TVETVVL-AQNNEGLKALYQLSSAIKM----KEKEEVP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L WL+      +I+        ID        Q+ E         F D+++V +  H   
Sbjct: 107  LEWLKRYDKNLIIIFKD-----IDNT----HKQIIEA--------FNDKIHVYIN-HTSN 148

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKDRPRV 248
            D     +V               ++ +L+ ED +    L A+  ++    +   KD    
Sbjct: 149  DIVNRKKV------------WLKSARYLNREDADTISALQAIKDNSKLDIINDSKDFGEH 196

Query: 249  TPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             PD   K   E+     ++ E + +NT +I   C   L  H  +LP+++  +        
Sbjct: 197  FPDQ--KEFEEL-----EIDEKIKQNTEDIVDLCKAELVYHQSLLPQYVTPD-------- 241

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              E+    +  + +R          + + Y  RL  E  +I +M F  YFLIV+D I +A
Sbjct: 242  -GEVSKDYLWSVLIRKLNEW---NLNNEQYLNRLKHEYEIITKMGFEDYFLIVSDLIHYA 297

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K +++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR
Sbjct: 298  KTHDVMVGPGRGSSAGSLVSYLLEITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRR 357

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            ++VI+YVQ KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     +
Sbjct: 358  EKVIQYVQEKYGELHVSGIVTFGHLLARAVGRDVGRIMGFDETTLNEISKLIPHKLG--I 415

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            +L     +  F+     +   +   E+S+KLEGL RH STHAAGI+I D+PL +  P+  
Sbjct: 416  TLDKAYQEEDFKSFVHRNHRNELWFEMSKKLEGLPRHTSTHAAGIIINDQPLYKYAPL-- 473

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606
             +     +TQ+ M   E+ GL+K DFLGL+ L+++ + ++ + +   V +D+  IPFDD 
Sbjct: 474  TLGDTGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIVNQVKKDLDVDIDVEAIPFDDK 533

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              + LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++
Sbjct: 534  NVFKLLSQGDTTGIFQLESEGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRH 593

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
               K+  +H  ++ +LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++
Sbjct: 594  DPSKVEYLHNDLESILKSTYGVIIYQEQIMQIASKFANFSYGEADILRRAMSKKNRAVLE 653

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             +++ F++GA +NG ++ I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K +YP  
Sbjct: 654  NERQHFVNGAKQNGYNEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVYYPNY 713

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F A  ++  + + +K      +A+   + I+PP++N     +K     IY SL AIKGVG
Sbjct: 714  FYANILSNVIGSEKKTSAIIDEAKHQKLNILPPNINESHWYYKATTKGIYLSLGAIKGVG 773

Query: 847  TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
              + + I+ E   +  F    DF  R+  +  +R++LE+L+  GA D FG +R  LLQ++
Sbjct: 774  YQSVKTIVDERYNNGKFKDFFDFTRRIPKRVKSRKLLEALILVGAFDHFGKNRATLLQTI 833

Query: 906  DNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            D +   A  VE++     + +F     K  + DK  L         +  + E+  LGFY 
Sbjct: 834  DQVLDTASDVEQD-----DMLFDILTPKQAYEDKEELP------DKMLSDYEKEYLGFYI 882

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S HP++  K   +K  +  Y+   A    N+  +     + +Q +T+ G  + +VT ++ 
Sbjct: 883  SKHPVE--KEFDKKQYLGIYKLGNAQ---NHQPILVHFDAIKQIRTKNGQNMAFVTLNDG 937

Query: 1024 AKEYEANFFP 1033
                +   FP
Sbjct: 938  MLLMDGVIFP 947


>gi|21283375|ref|NP_646463.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            MW2]
 gi|49486528|ref|YP_043749.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            MSSA476]
 gi|297207585|ref|ZP_06924020.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus ATCC 51811]
 gi|300911666|ref|ZP_07129110.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus TCH70]
 gi|38604909|sp|Q8NW58|DPO3A_STAAW RecName: Full=DNA polymerase III subunit alpha
 gi|60392206|sp|Q6G8M4|DPO3A_STAAS RecName: Full=DNA polymerase III subunit alpha
 gi|21204815|dbj|BAB95511.1| DNA POLYMERASE III ALPHA SUBUNIT [Staphylococcus aureus subsp. aureus
            MW2]
 gi|49244971|emb|CAG43432.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            MSSA476]
 gi|296887602|gb|EFH26500.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus ATCC 51811]
 gi|300887087|gb|EFK82288.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus TCH70]
          Length = 1065

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 342/1034 (33%), Positives = 536/1034 (51%), Gaps = 103/1034 (9%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4    YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                        MT        TV ++VL     +G + L +L S             I 
Sbjct: 64   ------------MTIYVTNGLNTVETVVL-AKNNDGLKDLYQLSSE------------IK 98

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            ++ L+ +  E L                    + +   ++ FKK+ GD+       HR  
Sbjct: 99   MNALEHVSFELL-------------------KRFSNNMIIIFKKV-GDQ-------HRDI 131

Query: 193  DRYRESQVVQLAYTHELPL-------VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             +  E+      Y   L +       V   N  + + +D +    L A+  +T +     
Sbjct: 132  VQVFETH--NDTYMDHLSISIQGRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHD 189

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                  H+L  +   ++      E L     IA++C   L+ H  +LP++ E   D+  K
Sbjct: 190  QEDFGAHFLTEKE--INQLDINQEYLTQVDVIAQKCDAELKYHQSLLPQY-ETPNDESAK 246

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +    +    +  LE+          Y    Y +RL +E  VI  M F  YFLIV+D I 
Sbjct: 247  KYLWRVLVTQLKKLEL---------NYDV--YLERLKYEYKVITNMGFEDYFLIVSDLIH 295

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK N++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   
Sbjct: 296  YAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDT 355

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+ VI+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+    
Sbjct: 356  RRERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG- 414

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++L        F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+
Sbjct: 415  -ITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPL 473

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             +     L  TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFD
Sbjct: 474  TKGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFD 531

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D + + LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R
Sbjct: 532  DQKVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITR 591

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++   K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  
Sbjct: 592  RHDPSKVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAV 651

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            ++ +++ FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP
Sbjct: 652  LESERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYP 711

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
              F A  ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKG
Sbjct: 712  NYFYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKG 771

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG  + + I+ E   +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ
Sbjct: 772  VGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQ 831

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVL 959
            ++D        V     N  ++ F  +    K  + DK  L    +       + E+  L
Sbjct: 832  AIDQ-------VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYL 878

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GFY S HP+D  K  + K  +  ++ S A    NN  +       +Q +T+ G  + +VT
Sbjct: 879  GFYVSQHPVD--KKFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVT 933

Query: 1020 FSEPAKEYEANFFP 1033
             ++  +  +   FP
Sbjct: 934  LNDGIETLDGVIFP 947


>gi|314933855|ref|ZP_07841220.1| DNA polymerase III, alpha subunit [Staphylococcus caprae C87]
 gi|313654005|gb|EFS17762.1| DNA polymerase III, alpha subunit [Staphylococcus caprae C87]
          Length = 1067

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 339/1030 (32%), Positives = 549/1030 (53%), Gaps = 95/1030 (9%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL +H++Y LL  +L + ++++K   +   A+AITDT+ L+   +F     A  I PI G
Sbjct: 4    HLNIHTAYDLLNASLKIEDVVNKAKNEGYRALAITDTHVLYGFPKFYDACIAKDIHPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              + I + D L           TV ++VL     EG + L +L S + +    K+   + 
Sbjct: 64   --MTITLTDGLY----------TVETVVL-AQNNEGLKALYQLSSAIKM----KEKEEVP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L WL+      +I+        ID        Q+ E         F D+++V +  H   
Sbjct: 107  LEWLKRYDKNLIIIFKD-----IDNT----HKQIIEA--------FDDKIHVYIN-HTSN 148

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKDRPRV 248
            D     +V               ++ +L+ ED +    L A+  ++    +   KD    
Sbjct: 149  DIVNRKKV------------WLKSARYLNREDADTISALQAIKDNSKLDIINDSKDFGEH 196

Query: 249  TPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             PD   K   E+     ++ E + +NT +I   C   L  H  +LP+++  +        
Sbjct: 197  FPDQ--KEFEEL-----EIDEKIKQNTEDIVDLCKAELVYHQSLLPQYVTPD-------- 241

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              E+    +  + +R          + + Y  RL  E  +I +M F  YFLIV+D +Q+A
Sbjct: 242  -GEVSKDYLWSVLIRKLNEW---NLNNEQYLNRLKHEYEIITKMGFEDYFLIVSDLMQYA 297

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K +++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR
Sbjct: 298  KTHDVMVGPGRGSSAGSLVSYLLEITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRR 357

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            ++VI+YVQ KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     +
Sbjct: 358  EKVIQYVQEKYGELHVSGIVTFGHLLARAVGRDVGRIMGFDETTLNEISKLIPHKLG--I 415

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            +L     +  F+     +   +   E+S+KLEGL RH STHAAGI+I D+PL +  P+  
Sbjct: 416  TLDKAYQEEDFKSFVHRNHRNELWFEMSKKLEGLPRHTSTHAAGIIINDQPLYKYAPL-- 473

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606
             +     +TQ+ M   E+ GL+K DFLGL+ L+++ + ++ + +   V +D+  IPFDD 
Sbjct: 474  TLGDTGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIVNQVKKDLDVDIDVEAIPFDDK 533

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              + LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++
Sbjct: 534  NVFKLLSQGDTTGIFQLESEGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRH 593

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
               K+  +H  ++ +LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++
Sbjct: 594  DPSKVEYLHNDLESILKSTYGVIIYQEQIMQIASKFANFSYGEADILRRAMSKKNRAVLE 653

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             +++ F++GA +NG ++ I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K +YP  
Sbjct: 654  NERQHFVNGAKQNGYNEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVYYPNY 713

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F A  ++  + + +K      +A+   + I+PP++N     +K     IY SL AIKGVG
Sbjct: 714  FYANILSNVIGSEKKTSAIIDEAKHQKLNILPPNINESHWYYKATSKGIYLSLGAIKGVG 773

Query: 847  TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
              + + I+ E   +  F    DF  R+  +  +R++LE+L+  GA D FG +R  LLQ++
Sbjct: 774  YQSVKTIVDERYNNGKFKDFFDFTRRIPKRVKSRKLLEALILVGAFDHFGKNRATLLQTI 833

Query: 906  DNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            D +   A  VE++     + +F     K  + DK  L         +  + E+  LGFY 
Sbjct: 834  DQVLDTASDVEQD-----DMLFDILTPKQAYEDKEELP------DKMLSDYEKEYLGFYI 882

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S HP++  K   +K  +  Y+   A    N+  +     + +Q +T+ G  + +VT ++ 
Sbjct: 883  SKHPVE--KEFDKKQYLGIYKLGNAQ---NHQPILVQFDAIKQIRTKNGQNMAFVTLNDG 937

Query: 1024 AKEYEANFFP 1033
                +   FP
Sbjct: 938  MLLMDGVIFP 947


>gi|88195511|ref|YP_500316.1| DNA polymerase III subunit alpha superfamily protein [Staphylococcus
            aureus subsp. aureus NCTC 8325]
 gi|14194671|sp|Q9F1K0|DPO3A_STAA8 RecName: Full=DNA polymerase III subunit alpha
 gi|12082345|dbj|BAB20884.1| DnaE [Staphylococcus aureus]
 gi|87203069|gb|ABD30879.1| DNA polymerase III, alpha subunit superfamily [Staphylococcus aureus
            subsp. aureus NCTC 8325]
 gi|329726967|gb|EGG63424.1| putative DNA polymerase III subunit alpha [Staphylococcus aureus
            subsp. aureus 21189]
          Length = 1065

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 339/1033 (32%), Positives = 537/1033 (51%), Gaps = 101/1033 (9%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4    YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                        MT        TV ++VL     +G + L +L S             I 
Sbjct: 64   ------------MTIYVTNGLNTVETVVL-AKNNDGLKDLYQLSSE------------IK 98

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG- 191
            ++ L+ +  E L                    + +   ++ FKK+ GD+       HR  
Sbjct: 99   MNALEHVSFELL-------------------KRFSNNMIIIFKKV-GDQ-------HRDI 131

Query: 192  ---YDRYRESQVVQLAYTHE-LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
               ++ + ++ +  L+ + +    V   N  + + +D +    L A+  +T +       
Sbjct: 132  VQVFETHNDTYMDHLSISIQGRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQE 191

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                H+L  +   ++      E L     IA++C   L+ H  +LP++ E   D+  K+ 
Sbjct: 192  DFGAHFLTEKE--INQLDINQEYLTQVDVIAQKCDAELKYHQSLLPQY-ETPNDESAKKY 248

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               +    +  LE+           +   Y +RL +E  VI  M F  YFLIV+D I +A
Sbjct: 249  LWRVLVTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYA 297

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR
Sbjct: 298  KTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRR 357

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            + VI+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +
Sbjct: 358  ERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--I 415

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            +L        F+E    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +
Sbjct: 416  TLDEAYQIDDFKEFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTK 475

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606
                 L  TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD 
Sbjct: 476  GDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQ 533

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + + LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++
Sbjct: 534  KVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRH 593

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
               K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++
Sbjct: 594  DPSKVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLE 653

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             +++ FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  
Sbjct: 654  SERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNY 713

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F A  ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG
Sbjct: 714  FYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVG 773

Query: 847  TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
              + + I+ E   +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++
Sbjct: 774  YQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAI 833

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            D        V     N  ++ F  +    K  + DK  L    +       + E+  LGF
Sbjct: 834  DQ-------VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGF 880

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTF 1020
            Y S HP+D      +K   K Y          N +   +   K +Q +T+ G  + +VT 
Sbjct: 881  YVSQHPVD------KKFVAKQYLTIFKLSNAQNYKPILVQFDKVKQIRTKNGQNMAFVTL 934

Query: 1021 SEPAKEYEANFFP 1033
            ++  +  +   FP
Sbjct: 935  NDGIETLDGVIFP 947


>gi|329733207|gb|EGG69544.1| putative DNA polymerase III subunit alpha [Staphylococcus aureus
            subsp. aureus 21193]
          Length = 1065

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 338/1032 (32%), Positives = 540/1032 (52%), Gaps = 99/1032 (9%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4    YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                        MT        TV ++VL     +G + L +L S             I 
Sbjct: 64   ------------MTIYVTNGLNTVETVVL-AKNNDGLKDLYQLSSE------------IK 98

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG- 191
            ++ L+ +  E L                    + +   ++ FKK+ GD+       HR  
Sbjct: 99   MNALEHVSFELL-------------------KRFSNNMIIIFKKV-GDQ-------HRDI 131

Query: 192  ---YDRYRESQVVQLAYTHE-LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
               ++ + ++ +  L+ + +    V   N  + + +D +    L A+  +T +       
Sbjct: 132  VQVFETHNDTYMDHLSISIQGRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQE 191

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                H+L  +   +       E L     IA++C+  L+ H  +LP++ E   D+  K+ 
Sbjct: 192  DFGAHFLTEKE--IKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQY-ETPNDESAKKY 248

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               +    +  LE+           +   Y +RL +E  VI  M F  YFLIV+D I +A
Sbjct: 249  LWRVLVTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYA 297

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR
Sbjct: 298  KTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRR 357

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            + VI+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +
Sbjct: 358  ERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--I 415

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            +L        F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +
Sbjct: 416  TLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTK 475

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606
                 L  TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD 
Sbjct: 476  GDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQ 533

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + + LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++
Sbjct: 534  KVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRH 593

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
               K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++
Sbjct: 594  DPSKVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLE 653

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             +++ FI GA +NG  + I+  IF+L+ KF+DYGF ++HA +Y+ I+Y  +++K HYP  
Sbjct: 654  SERQHFIEGAKQNGYHEDISKQIFDLILKFSDYGFPRAHAVSYSKIAYIMSFLKVHYPNY 713

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F A  ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG
Sbjct: 714  FYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVG 773

Query: 847  TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
              + + I+ E   +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++
Sbjct: 774  YQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAI 833

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            D        V     N  ++ F  +    K  + DK  L    +       + E+  LGF
Sbjct: 834  DQ-------VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGF 880

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S HP+D  K  + K  +  ++ S A    NN  +       +Q +T+ G  + +VT +
Sbjct: 881  YVSQHPVD--KKFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLN 935

Query: 1022 EPAKEYEANFFP 1033
            +  +  +   FP
Sbjct: 936  DGIETLDGVIFP 947


>gi|163787271|ref|ZP_02181718.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium ALC-1]
 gi|159877159|gb|EDP71216.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium ALC-1]
          Length = 1128

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 320/855 (37%), Positives = 470/855 (54%), Gaps = 76/855 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------------ 58
            FVHL  HS +S+L+  +S+ +++   A +  PA+A+TD  N+  A  F            
Sbjct: 261  FVHLHNHSQFSILQSTISIKDLVAAAAKENMPAVALTDHGNMMGAFHFVSAVGNHNKGVK 320

Query: 59   SQKACAAG---------IQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
            +Q A A           I+PIIGC+  + +  D+    + G         IVL+    +G
Sbjct: 321  AQHAQAEENGDEKKGKLIKPIIGCEFFVCEKHDDKTRKDNGY-------QIVLMAKNKKG 373

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
            Y  L +L S  +    G   V      L E   E LI LTG   G +           AE
Sbjct: 374  YHNLAKLSSAAFT--DGFYYVPRIDKQLIEQYKEDLICLTGNLYGEVPSKVLNVGENQAE 431

Query: 169  KRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEA 227
            + LL +K  F D LY+ L RH   D  R + V +Q A  H++ LVATNN+ ++ +E+  A
Sbjct: 432  EALLWWKDTFQDDLYIELMRHNQEDENRVNPVLIQFAKKHDVKLVATNNTYYVEQENANA 491

Query: 228  HDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            HD+L+ V      +T + +    R      ++Y K+  EM ++F D+PEA+ N  ++  +
Sbjct: 492  HDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSSEEMKALFRDVPEAIVNIQDVVDK 551

Query: 281  CSFILQVHAPILPRFI--------EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
                      +LP F         + E D  ++ E   L++    G E R        G 
Sbjct: 552  IEPYELARDVLLPAFDIPNEFKHEDDEADGGKRGENAFLKHLTYKGAEKRY-------GD 604

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
               + ++RLDFEL+VI    + GYFLIV DFI+ A+K ++ VGPGRGS AGSV AY L I
Sbjct: 605  ITPEIKERLDFELSVIENTGYPGYFLIVEDFIREARKMDVSVGPGRGSAAGSVVAYCLWI 664

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV NKYG  +VAQIIT+G++
Sbjct: 665  TNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGSNQVAQIITYGTM 724

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPN----DPAHPVSLQAIADDSRFREARLADPSV 508
             AK+++RD  R L +P    DR+ KLIP          +S + +A   +FR   L    V
Sbjct: 725  AAKSSIRDTARVLDLPLGDADRISKLIPTMSKLGKIFGLSEKDLA--KKFRAEDLE--KV 780

Query: 509  DRLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
            + LL IS               LEG  R+   HA G++I    ++  VP+     SDL V
Sbjct: 781  NELLNISDGEDLQAETVNQARVLEGSVRNTGIHACGVIITPGDITNYVPVALAKDSDLYV 840

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTT 614
            TQF+   +E AGL+K DFLGLKTLTL++ ++  + A+  + +D    P DD ETY L   
Sbjct: 841  TQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKIVKAKHDILLDPENFPLDDEETYALFQR 900

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
              T+GIFQ ES GM++ ++ ++P   +D+IA+ +LYRPGP++ I  +  RK+G E+I   
Sbjct: 901  GETVGIFQYESPGMQKHMKNLKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGDEEIDYD 960

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
             P ++  LKET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK    +DK K +FI 
Sbjct: 961  LPEMEEYLKETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIE 1020

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             AS  G+       I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA ++ 
Sbjct: 1021 QASAKGLDAKKLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSN 1080

Query: 795  EMDNVEKIKKFCQDA 809
             M++++ +  F ++ 
Sbjct: 1081 NMNDIKSVTFFMEEC 1095


>gi|82751290|ref|YP_417031.1| DNA polymerase III alpha subunit [Staphylococcus aureus RF122]
 gi|82656821|emb|CAI81250.1| DNA polymerase III alpha subunit [Staphylococcus aureus RF122]
          Length = 1065

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 335/1027 (32%), Positives = 532/1027 (51%), Gaps = 89/1027 (8%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4    YLNIHTAYDLLNSSLKIEDAVRLAVSENVEALAITDTNVLYGFPKFYDACIANNIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                        MT        T+ ++VL      G + L +L S++ +         + 
Sbjct: 64   ------------MTIYVTNGLNTIETVVL-AKDNNGLKDLYQLSSKIKM----NSMENVS 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
               LQ+  +  +I+    +    D    F+S +                           
Sbjct: 107  FELLQQFSSNLIIIFKNVADEHRDIVQDFDSHE--------------------------- 139

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
            D Y + + V       +  V   N  + + +D +    L A+  +T +           H
Sbjct: 140  DTYLDHRSV---LVQGIKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAH 196

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +L  +   +       E L     IA++C+  L+ H  +LP++ +   D+  K+    + 
Sbjct: 197  FLTEKE--IKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVL 253

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
               +  LE+          Y    Y +RL +E  VI  M F  YFLIV+D I +AK N++
Sbjct: 254  VTQLKKLEL---------NYDV--YLERLKYEYKVITNMGFEDYFLIVSDLIHYAKMNDV 302

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+
Sbjct: 303  MVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQ 362

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L   
Sbjct: 363  YVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEA 420

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                 F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +     
Sbjct: 421  YQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGL 480

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611
            L  TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + L
Sbjct: 481  L--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFDL 538

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            L+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+
Sbjct: 539  LSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKV 598

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ 
Sbjct: 599  QYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQH 658

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  
Sbjct: 659  FIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANI 718

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            ++  + + +K  +  ++A++ +I I+PP++N     +K     IY S+  IKGVG  + +
Sbjct: 719  LSNVIGSEKKTAQMIEEAKKQSITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVK 778

Query: 852  HIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
             I+ E   +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D    
Sbjct: 779  VIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ--- 835

Query: 911  YAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                V     N  ++ F  +    K  + DK  L    +       + E+  LGFY S H
Sbjct: 836  ----VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQH 885

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P+D  K  + K  +  ++ S A    NN  +       +Q +T+ G  + +VT ++  + 
Sbjct: 886  PVD--KKFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIET 940

Query: 1027 YEANFFP 1033
             +   FP
Sbjct: 941  LDGVIFP 947


>gi|302333367|gb|ADL23560.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus JKD6159]
          Length = 1065

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 336/1028 (32%), Positives = 536/1028 (52%), Gaps = 91/1028 (8%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4    YLNIHTAYDLLNSSLKIEDAVRLAVSENVEALAITDTNVLYGFPKFYDACIANNIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                        MT        T+ ++VL      G + L +L S++ +         + 
Sbjct: 64   ------------MTIYVTNGLNTIETVVL-AKDNNGLKDLYQLSSKIKM----NSMENVS 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
               LQ+  +  +I+    +    D    F+S +                           
Sbjct: 107  FELLQQFSSNLIIIFKNVADEHRDIVQVFDSHE--------------------------- 139

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
            D Y + + V       +  V   N  + + +D +    L A+  +T +           H
Sbjct: 140  DTYLDHRSV---LVQGIKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAH 196

Query: 253  YLKNRSEMVSIFSDLPEALENTVE-IARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            +L  + E+  +  D+ +     V+ IA++C+  L+ H  +LP++ +   D+  K+    +
Sbjct: 197  FLTEK-EIKQL--DINQGYLTQVDVIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRV 252

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                +  LE+           +   Y +RL +E  VI  M F  YFLIV+D I +AK N+
Sbjct: 253  LVTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTND 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +    
Sbjct: 362  QYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLRITLDEAY 421

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
              DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +    
Sbjct: 422  QIDD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG 479

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
             L  TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + 
Sbjct: 480  LL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFD 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K
Sbjct: 538  LLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSK 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++
Sbjct: 598  VQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A 
Sbjct: 658  HFIEGAKENGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + 
Sbjct: 718  ILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSV 777

Query: 851  RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+ E   +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D   
Sbjct: 778  KVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ-- 835

Query: 910  KYAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
                 V     N  ++ F  +    K  + DK  L    +       + E+  LGFY S 
Sbjct: 836  -----VLDGDLNIEQDGFLFDILTPKQIYEDKEELPDALIS------QYEKEYLGFYVSQ 884

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+D  K  + K  +  ++ S A    NN  +       +Q +T+ G  + +VT ++  +
Sbjct: 885  HPVD--KKFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGKNMAFVTLNDGIE 939

Query: 1026 EYEANFFP 1033
              +   FP
Sbjct: 940  TLDGVIFP 947


>gi|57650573|ref|YP_186586.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus COL]
 gi|87161888|ref|YP_494343.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus USA300_FPR3757]
 gi|151221809|ref|YP_001332631.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus str. Newman]
 gi|161509916|ref|YP_001575575.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus USA300_TCH1516]
 gi|221142338|ref|ZP_03566831.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus str. JKD6009]
 gi|258450902|ref|ZP_05698955.1| DNA polymerase III subunit alpha [Staphylococcus aureus A5948]
 gi|262049018|ref|ZP_06021896.1| DNA polymerase III, alpha chain [Staphylococcus aureus D30]
 gi|262051793|ref|ZP_06024010.1| DNA polymerase III, alpha chain [Staphylococcus aureus 930918-3]
 gi|282924393|ref|ZP_06332066.1| DNA polymerase III subunit alpha [Staphylococcus aureus A9765]
 gi|284024750|ref|ZP_06379148.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus 132]
 gi|294849863|ref|ZP_06790602.1| DNA polymerase III subunit alpha [Staphylococcus aureus A9754]
 gi|304380705|ref|ZP_07363376.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus ATCC BAA-39]
 gi|81859569|sp|Q5HF71|DPO3A_STAAC RecName: Full=DNA polymerase III subunit alpha
 gi|57284759|gb|AAW36853.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus COL]
 gi|87127862|gb|ABD22376.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus USA300_FPR3757]
 gi|150374609|dbj|BAF67869.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus str. Newman]
 gi|160368725|gb|ABX29696.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus USA300_TCH1516]
 gi|257861438|gb|EEV84246.1| DNA polymerase III subunit alpha [Staphylococcus aureus A5948]
 gi|259160287|gb|EEW45314.1| DNA polymerase III, alpha chain [Staphylococcus aureus 930918-3]
 gi|259162835|gb|EEW47399.1| DNA polymerase III, alpha chain [Staphylococcus aureus D30]
 gi|269941182|emb|CBI49570.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            TW20]
 gi|282592894|gb|EFB97897.1| DNA polymerase III subunit alpha [Staphylococcus aureus A9765]
 gi|294823202|gb|EFG39632.1| DNA polymerase III subunit alpha [Staphylococcus aureus A9754]
 gi|302751529|gb|ADL65706.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus str. JKD6008]
 gi|304340812|gb|EFM06741.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus ATCC BAA-39]
 gi|315197169|gb|EFU27508.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus CGS01]
 gi|320141645|gb|EFW33480.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus MRSA131]
 gi|320143799|gb|EFW35572.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus MRSA177]
 gi|329314376|gb|AEB88789.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            T0131]
          Length = 1065

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 338/1033 (32%), Positives = 537/1033 (51%), Gaps = 101/1033 (9%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4    YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                        MT        TV ++VL     +G + L +L S             I 
Sbjct: 64   ------------MTIYVTNGLNTVETVVL-AKNNDGLKDLYQLSSE------------IK 98

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG- 191
            ++ L+ +  E L                    + +   ++ FKK+ GD+       HR  
Sbjct: 99   MNALEHVSFELL-------------------KRFSNNMIIIFKKV-GDQ-------HRDI 131

Query: 192  ---YDRYRESQVVQLAYTHE-LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
               ++ + ++ +  L+ + +    V   N  + + +D +    L A+  +T +       
Sbjct: 132  VQVFETHNDTYMDHLSISIQGRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQE 191

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                H+L  +   ++      E L     IA++C   L+ H  +LP++ E   D+  K+ 
Sbjct: 192  DFGAHFLTEKE--INQLDINQEYLTQVDVIAQKCDAELKYHQSLLPQY-ETPNDESAKKY 248

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               +    +  LE+           +   Y +RL +E  VI  M F  YFLIV+D I +A
Sbjct: 249  LWRVLVTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYA 297

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR
Sbjct: 298  KTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRR 357

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            + VI+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +
Sbjct: 358  ERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--I 415

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            +L        F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +
Sbjct: 416  TLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTK 475

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606
                 L  TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD 
Sbjct: 476  GDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQ 533

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + + LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++
Sbjct: 534  KVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRH 593

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
               K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++
Sbjct: 594  DPSKVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLE 653

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             +++ FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  
Sbjct: 654  SERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNY 713

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F A  ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG
Sbjct: 714  FYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVG 773

Query: 847  TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
              + + I+ E   +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++
Sbjct: 774  YQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAI 833

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            D        V     N  ++ F  +    K  + DK  L    +       + E+  LGF
Sbjct: 834  DQ-------VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGF 880

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTF 1020
            Y S HP+D      +K   K Y          N +   +   K +Q +T+ G  + +VT 
Sbjct: 881  YVSQHPVD------KKFVAKQYLTIFKLSNAQNYKPILVQFDKVKQIRTKNGQNMAFVTL 934

Query: 1021 SEPAKEYEANFFP 1033
            ++  +  +   FP
Sbjct: 935  NDGIETLDGVIFP 947


>gi|282916962|ref|ZP_06324720.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            D139]
 gi|282319449|gb|EFB49801.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            D139]
          Length = 1065

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 333/1027 (32%), Positives = 531/1027 (51%), Gaps = 89/1027 (8%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4    YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                        MT        T+ ++VL      G + L +L S++ +         + 
Sbjct: 64   ------------MTIYVTNGLNTIETVVL-AKDNNGLKDLYQLSSKIKI----NSMENVS 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
               LQ+  +  +I+    +    D    F+S +                           
Sbjct: 107  FELLQQFSSNLIIIFKNVADEHRDIVQVFDSHE--------------------------- 139

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
            D Y + + V       +  V   N  + + +D +    L A+  +T +           H
Sbjct: 140  DTYLDHRSV---LVQGIKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAH 196

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +L  +   +       E L     IA++C+  L+ H  +LP++ +   D+  K+    + 
Sbjct: 197  FLTEKE--IKQLDINQEYLTQVDAIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVL 253

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
               +  LE+           +   Y +RL +E  VI  M F  YFLIV+D I +AK N++
Sbjct: 254  VTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDV 302

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+
Sbjct: 303  MVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQ 362

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L   
Sbjct: 363  YVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEA 420

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                 F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +     
Sbjct: 421  YQIDNFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGL 480

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611
            L  TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFD+ + + L
Sbjct: 481  L--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDNQKVFEL 538

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            L+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+
Sbjct: 539  LSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKV 598

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ 
Sbjct: 599  QYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQH 658

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  
Sbjct: 659  FIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANI 718

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + +
Sbjct: 719  LSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVK 778

Query: 852  HIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
             I+ E   +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D    
Sbjct: 779  VIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ--- 835

Query: 911  YAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                V     N  ++ F  +    K  + DK  L    +       + E+  LGFY S H
Sbjct: 836  ----VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQH 885

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P+D  K  + K  +  ++ S A    NN  +       +Q +T+ G  + +VT ++  + 
Sbjct: 886  PVD--KMFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIET 940

Query: 1027 YEANFFP 1033
             +   FP
Sbjct: 941  LDGVIFP 947


>gi|17375431|sp|P74750|DPO3A_SYNY3 RecName: Full=DNA polymerase III subunit alpha; Contains: RecName:
           Full=Ssp dnaE intein
          Length = 1355

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 300/791 (37%), Positives = 466/791 (58%), Gaps = 59/791 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+      PAIA+TD   ++ A+E  +      I+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAVELLKVCRGKPIKP 61

Query: 70  IIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL--VSRMYLL 122
           IIG ++     DI++    +  +Q           V+L    +GY+ L++L  +S +  +
Sbjct: 62  IIGNEMYVINGDIEINKRHRRFHQ-----------VVLAKNNQGYRNLVKLTTISNLKGI 110

Query: 123 DQGKQSVRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                  R C++  L E   EGLI+ +    G + +A        A +    +K LFGD 
Sbjct: 111 QGSGIFARPCINKELLEQYKEGLIVTSACLGGEVPQAILKGDLDHARQVAKWYKNLFGDD 170

Query: 182 LYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            Y+ +Q H    DR     +V++A   ++ +VATN+S F+S  D EAHD L+ +    ++
Sbjct: 171 YYLEIQDHGSVEDRLVNINLVKIAQELDIKIVATNDSHFISCNDVEAHDALLCIQTGKLI 230

Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSD-LPE-----ALENTVEIARRCSFILQVHAPILPR 294
           +++ R R +   YLK+  EM  +F D LP+     A+ NT+E+A +      +  P +P 
Sbjct: 231 TEEKRLRYSGTEYLKSAEEMHLLFRDHLPDDIIETAIANTLEVADKVEAYSILGEPRIPH 290

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
           +            E  + + A  GL  RL      +      Y++RL++EL ++ +M F 
Sbjct: 291 YPIPP----NHTPETYVEDIAWDGLLERLK--CRERADITPVYKERLEYELRMLEKMGFC 344

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFL+V D+I++A+ + IPVGPGRGS AGS+ AY + IT+IDP+   L+FERFLNP+R S
Sbjct: 345 TYFLVVWDYIKYARDHGIPVGPGRGSAAGSLVAYCMKITNIDPVHHGLIFERFLNPERKS 404

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           MPD D DFC DRRDE+I YV  KYG ++VAQIITF  + +KA L+DV R L +PY++ D+
Sbjct: 405 MPDVDTDFCIDRRDEMIEYVTQKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYAESDK 464

Query: 475 LCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
           + K+IP     P  L+ +  D     +F+     +P V + ++++ ++EG  +    HAA
Sbjct: 465 MAKMIPVSRGKPAKLKVMISDQTPEPQFKARYDNEPWVKKWIDMAIRIEGTNKTFGVHAA 524

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           G+VI   PL Q+VP+ ++    + +TQ+ M+ +E  GL+K DFLGLK LT LQ++++ +A
Sbjct: 525 GVVISSEPLDQIVPLQKNNDGAV-ITQYYMEDVEAMGLLKMDFLGLKNLTTLQRAVELVA 583

Query: 591 Q-RGVKVDLSLIPF------------------DDHETYHLLTTKGTL-GIFQLESSGMRQ 630
           + +G+++DL  +P                   DD +  H L   G L GIFQLES GM+Q
Sbjct: 584 ETKGIELDLDDLPLQERKALQIRARTGSKKLPDDVKKTHKLLEAGDLEGIFQLESQGMKQ 643

Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            +  ++P  IEDI ++++LYRPGP+D   I ++ NRK+G+E+I   H L++P+L ET GV
Sbjct: 644 IVRDLKPSGIEDISSILALYRPGPLDAGLIPIFINRKHGREEISYQHKLLEPILNETYGV 703

Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
           ++YQEQ+M++AQ L+ YSL EAD+LRRAMGKK  EEM K + +F+ G++K+G+   IA N
Sbjct: 704 LVYQEQIMKMAQDLADYSLGEADLLRRAMGKKKAEEMQKHRAKFVDGSTKHGVPSRIAEN 763

Query: 749 IFELLAKFADY 759
           +F+ + KFA+Y
Sbjct: 764 LFDQMVKFAEY 774



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 149/292 (51%), Gaps = 22/292 (7%)

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSH+ AYA ++YQTA++K +YPVE++AA +T   D+ EK++K+ ++ ++  I + PP 
Sbjct: 935  FNKSHSTAYAYVTYQTAYLKANYPVEYMAALLTASSDSQEKVEKYRENCQKMGITVEPPD 994

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA---SADKPFDSLEDFCSRVDSKKL 877
            +N     F      I + L+A++ +G      I+ A   S +K F SL DFC++VD + +
Sbjct: 995  INRSQRHFTPLGEAILFGLSAVRNLGEGAIEQIITARDNSEEKRFKSLADFCTQVDLRVV 1054

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR +E+L+ AGA D    +R QLL  L+ +  +AQ   K +     NIF       S K
Sbjct: 1055 NRRAIETLIMAGAFDGVQSNRNQLLHDLELVIAWAQKRAKEKETGQLNIFDSLTAGESIK 1114

Query: 938  IT---------------LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG-IK 981
                             + +FS++    + + E+  LGFY S HPL   +   R +  I 
Sbjct: 1115 AKEAANNGFEQEPSAPPVAEFSLQE---KLQLEKEHLGFYVSEHPLKSVQRSARLLSPIN 1171

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +     +R     +A +V  K+    + G  + ++T  + + + EA  FP
Sbjct: 1172 LVDLDQYKVRQKVSAVAILVAVKKIITKKNGQPMAFLTLEDMSGQSEAVVFP 1223


>gi|269203340|ref|YP_003282609.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus ED98]
 gi|262075630|gb|ACY11603.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus ED98]
          Length = 1065

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 335/1028 (32%), Positives = 528/1028 (51%), Gaps = 91/1028 (8%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4    YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                        MT        TV ++VL     +G + L +L S + +         + 
Sbjct: 64   ------------MTIYVTNGLNTVETVVL-AKNNDGLKDLYQLSSEIKM----NSMENVS 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
               LQ+  ++ +I+    +    D    F+S +                           
Sbjct: 107  FELLQQFSSDLIIIFKNVADEHRDIVQVFDSHE--------------------------- 139

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
            D Y + Q V       +  V   N  + + +D +    L A+  +  +           H
Sbjct: 140  DTYLDHQSV---LVQGIKHVWIQNVCYQTRQDADTISALAAIRDNAKLDLIHDQEDFGAH 196

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +L  +   +       E L     IA++C+  L+ H  +LP++ +   D+  K+    + 
Sbjct: 197  FLTEKE--IKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVL 253

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
               +  LE+          Y    Y +RL +E  VI  M F  YFLIV+D I +AK N++
Sbjct: 254  VTQLKKLEL---------NYDV--YLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDV 302

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+
Sbjct: 303  MVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQ 362

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L   
Sbjct: 363  YVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEA 420

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                 F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +     
Sbjct: 421  YQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGL 480

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611
            L  TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + L
Sbjct: 481  L--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILIQVKKDLGINIDIEKIPFDDQKVFEL 538

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            L+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+
Sbjct: 539  LSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKV 598

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ 
Sbjct: 599  QYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQH 658

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  
Sbjct: 659  FIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANI 718

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + +
Sbjct: 719  LSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVK 778

Query: 852  HIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
             I+ E   +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D    
Sbjct: 779  VIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ--- 835

Query: 911  YAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                V     N  ++ F  +    K  + DK  L    +       + E+  LGFY S H
Sbjct: 836  ----VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQH 885

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAK 1025
            P+D      +K   K Y          N +   +   K +Q +T+ G  + +VT ++  +
Sbjct: 886  PVD------KKFVAKQYLTIFKLSNAQNYKPILVQFDKVKQIRTKNGQNMAFVTLNDGIE 939

Query: 1026 EYEANFFP 1033
              +   FP
Sbjct: 940  TLDGVIFP 947


>gi|226360211|ref|YP_002777989.1| DNA polymerase III subunit alpha [Rhodococcus opacus B4]
 gi|226238696|dbj|BAH49044.1| DNA polymerase III alpha subunit [Rhodococcus opacus B4]
          Length = 1178

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 346/1071 (32%), Positives = 567/1071 (52%), Gaps = 65/1071 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  +  + ++    +  A+ +TD  N++ A EF   A   GI+P
Sbjct: 4    SFVHLHNHTEYSMLDGAAKVGPLFEEAERLEMSAVGMTDHGNMYGASEFYNVAKKQGIKP 63

Query: 70   IIGCQLDIDMQD--NLKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  +  +   N K    G         +       + ++   A G + L +L S  
Sbjct: 64   IIGIEAYVAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSSLA 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +  Q  +  R+    L     EG+I  TG  SG I         + A +    +++++G
Sbjct: 124  SIEGQLGKWARMDEE-LIATHHEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEIWG 182

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +R     +++++ T  +P +ATN+  +++++  E H+ L+ +   
Sbjct: 183  KDNFFLELMDHGLSIERRVREGLLEISKTLGIPPLATNDCHYVTKDAAENHEALLCIQTG 242

Query: 238  TVVSQKDRPRVTPDHY-LKNRSEMVSIFSD-LPEALENTVEIARRCSFILQV--HAPILP 293
              +S   R +   D Y LK+ +EM +++ D +P A +NT+ IA R      V  H   +P
Sbjct: 243  KTLSDPTRFKFDGDGYFLKSAAEMRALWDDQVPGACDNTLLIAERVQSYDDVWAHHDRMP 302

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             F   E +     +   LR + + GL+ R   G        ++Y  R D+E+ VI  M F
Sbjct: 303  IFPVPEGE----TQGTWLRKEVMRGLDRRFPSGP------PEEYLARADYEIGVILEMGF 352

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL+V D I  A++  I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R+
Sbjct: 353  PAYFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERV 412

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471
            SMPD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAA++D  R    Q  ++ 
Sbjct: 413  SMPDIDIDFDDRRRGEMVRYATDKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFAI 472

Query: 472  VDRLCKLIPND-PAHPVSLQAIADDS--RFREARL------ADPSVDRLLEISQKLEGLY 522
             D++ K +P    A  +S+  I D +  R++EA        ++P V ++ + ++ LEGL 
Sbjct: 473  ADQITKALPPPIMAKDISVSGITDPNHERYKEAVEVRALIDSNPDVAKIYQTAKGLEGLI 532

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R+A  HA  +++   PL   +P+++  +    +T ++    E  GL+K DFLGL+ LT++
Sbjct: 533  RNAGVHACAVIMSSEPLMDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVI 592

Query: 583  QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++D + A RG+++DL  +  DD  TY LL+   TLG+FQL+ S MR  L  MQP   E
Sbjct: 593  GDAIDNIKANRGIELDLDTLELDDTATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFE 652

Query: 642  DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            DI+A+++LYRPGP+       Y +RKNG++++  IHP ++  LKE    T G+I+YQEQ+
Sbjct: 653  DIVAVLALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKEILADTYGLIVYQEQI 712

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQIAQ ++GYSL +AD+LRRAMGKK    +++    F  G   N  S+     +++ +  
Sbjct: 713  MQIAQKVAGYSLGQADILRRAMGKKKLSVLEEAYAGFREGMLANEFSEPAIKALWDTILP 772

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSHAA Y ++S+ T ++K +YP E++A  +T   D+ +K   +  D R+  I 
Sbjct: 773  FAGYAFNKSHAAGYGLVSFWTGYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKMGIT 832

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDS 874
            ++PP VN   V+F      I + + A++ VG      I++A  +K  F    D+ +++D+
Sbjct: 833  VLPPDVNESEVNFASVGEDIRFGMGAVRNVGANVVGSIIKARKEKSKFVDFSDYLNKIDA 892

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-- 932
               +++V ESL+ AG  D  G+ R  L+    +        +K       ++F  +    
Sbjct: 893  AACSKKVTESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAIGQFDLFGGDDADE 952

Query: 933  ----TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
                 F+ KI  E++   +S  R   E+ +LG Y SGHPL+  + +L        + ++ 
Sbjct: 953  SIASVFNVKIPEEEW---DSKHRLALEREMLGLYVSGHPLNGVEHVLSAQS----DTAIP 1005

Query: 989  TI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            TI       G  + +  ++ S  ++  + G         +     E  FFP
Sbjct: 1006 TILEGDIKDGTQVTVGGILASVNRRINKNGLTWASAQLEDLTGGIEVLFFP 1056


>gi|15924693|ref|NP_372227.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            Mu50]
 gi|15927280|ref|NP_374813.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            N315]
 gi|148268182|ref|YP_001247125.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus JH9]
 gi|150394249|ref|YP_001316924.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus JH1]
 gi|156980020|ref|YP_001442279.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            Mu3]
 gi|255006487|ref|ZP_05145088.2| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            Mu50-omega]
 gi|257794087|ref|ZP_05643066.1| DNA polymerase subunit III [Staphylococcus aureus A9781]
 gi|258415791|ref|ZP_05682062.1| DNA polymerase subunit III [Staphylococcus aureus A9763]
 gi|258421972|ref|ZP_05684892.1| DNA polymerase subunit III [Staphylococcus aureus A9719]
 gi|258438270|ref|ZP_05689554.1| DNA polymerase subunit III [Staphylococcus aureus A9299]
 gi|258443728|ref|ZP_05692067.1| DNA polymerase subunit III [Staphylococcus aureus A8115]
 gi|258445939|ref|ZP_05694115.1| DNA polymerase subunit III [Staphylococcus aureus A6300]
 gi|258448381|ref|ZP_05696498.1| DNA polymerase subunit III [Staphylococcus aureus A6224]
 gi|258454139|ref|ZP_05702110.1| DNA polymerase subunit III [Staphylococcus aureus A5937]
 gi|282893197|ref|ZP_06301431.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8117]
 gi|282927832|ref|ZP_06335443.1| DNA polymerase subunit III, alpha [Staphylococcus aureus A10102]
 gi|295406012|ref|ZP_06815820.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8819]
 gi|296274871|ref|ZP_06857378.1| DNA polymerase III DnaE [Staphylococcus aureus subsp. aureus MR1]
 gi|297245062|ref|ZP_06928939.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8796]
 gi|54036991|sp|P63980|DPO3A_STAAN RecName: Full=DNA polymerase III subunit alpha
 gi|54040952|sp|P63979|DPO3A_STAAM RecName: Full=DNA polymerase III subunit alpha
 gi|13701498|dbj|BAB42792.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            N315]
 gi|14247475|dbj|BAB57865.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            Mu50]
 gi|147741251|gb|ABQ49549.1| DNA polymerase III catalytic subunit, DnaE type [Staphylococcus
            aureus subsp. aureus JH9]
 gi|149946701|gb|ABR52637.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus JH1]
 gi|156722155|dbj|BAF78572.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            Mu3]
 gi|257788059|gb|EEV26399.1| DNA polymerase subunit III [Staphylococcus aureus A9781]
 gi|257839384|gb|EEV63857.1| DNA polymerase subunit III [Staphylococcus aureus A9763]
 gi|257842016|gb|EEV66445.1| DNA polymerase subunit III [Staphylococcus aureus A9719]
 gi|257848314|gb|EEV72305.1| DNA polymerase subunit III [Staphylococcus aureus A9299]
 gi|257851134|gb|EEV75077.1| DNA polymerase subunit III [Staphylococcus aureus A8115]
 gi|257855181|gb|EEV78120.1| DNA polymerase subunit III [Staphylococcus aureus A6300]
 gi|257858349|gb|EEV81234.1| DNA polymerase subunit III [Staphylococcus aureus A6224]
 gi|257863591|gb|EEV86348.1| DNA polymerase subunit III [Staphylococcus aureus A5937]
 gi|282590342|gb|EFB95421.1| DNA polymerase subunit III, alpha [Staphylococcus aureus A10102]
 gi|282764515|gb|EFC04641.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8117]
 gi|294969009|gb|EFG45030.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8819]
 gi|297178142|gb|EFH37390.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8796]
 gi|312830081|emb|CBX34923.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            ECT-R 2]
 gi|315130663|gb|EFT86649.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            CGS03]
 gi|329727251|gb|EGG63707.1| putative DNA polymerase III subunit alpha [Staphylococcus aureus
            subsp. aureus 21172]
          Length = 1065

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 335/1028 (32%), Positives = 527/1028 (51%), Gaps = 91/1028 (8%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4    YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                        MT        TV ++VL     +G + L +L S + +         + 
Sbjct: 64   ------------MTIYVTNGLNTVETVVL-AKNNDGLKDLYQLSSEIKM----NSMENVS 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
               LQ+  +  +I+    +    D    F+S +                           
Sbjct: 107  FELLQQFSSNLIIIFKNVADEHRDIVQVFDSHE--------------------------- 139

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
            D Y + Q V       +  V   N  + + +D +    L A+  +  +           H
Sbjct: 140  DTYLDHQSV---LVQGIKHVWIQNVCYQTRQDADTISALAAIRDNAKLDLIHDQEDFGAH 196

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +L  +   +       E L     IA++C+  L+ H  +LP++ +   D+  K+    + 
Sbjct: 197  FLTEKE--IKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVL 253

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
               +  LE+          Y    Y +RL +E  VI  M F  YFLIV+D I +AK N++
Sbjct: 254  VTQLKKLEL---------NYDV--YLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDV 302

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+
Sbjct: 303  MVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQ 362

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L   
Sbjct: 363  YVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEA 420

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                 F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +     
Sbjct: 421  YQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGL 480

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611
            L  TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + L
Sbjct: 481  L--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILIQVKKDLGINIDIEKIPFDDQKVFEL 538

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            L+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+
Sbjct: 539  LSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKV 598

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ 
Sbjct: 599  QYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQH 658

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  
Sbjct: 659  FIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANI 718

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + +
Sbjct: 719  LSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVK 778

Query: 852  HIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
             I+ E   +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D    
Sbjct: 779  VIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ--- 835

Query: 911  YAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                V     N  ++ F  +    K  + DK  L    +       + E+  LGFY S H
Sbjct: 836  ----VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQH 885

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAK 1025
            P+D      +K   K Y          N +   +   K +Q +T+ G  + +VT ++  +
Sbjct: 886  PVD------KKFVAKQYLTIFKLSNAQNYKPILVQFDKVKQIRTKNGQNMAFVTLNDGIE 939

Query: 1026 EYEANFFP 1033
              +   FP
Sbjct: 940  TLDGVIFP 947


>gi|298694972|gb|ADI98194.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            ED133]
          Length = 1065

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 333/1027 (32%), Positives = 530/1027 (51%), Gaps = 89/1027 (8%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4    YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                        MT        T+ ++VL      G + L +L S++ +         + 
Sbjct: 64   ------------MTIYVTNGLNTIETVVL-AKDNNGLKDLYQLSSKIKM----NSMENVS 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
               LQ+  +  +I+    +    D    F+S +                           
Sbjct: 107  FELLQQFSSNLIIIFKNVADEHRDIVQVFDSHE--------------------------- 139

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
            D Y + Q V       +  V      + + +D +    L A+  +T +           H
Sbjct: 140  DTYLDHQSV---LVQGIKHVWIQTVCYQTPQDADTISALAAIRDNTKLDLIHDQEDFGAH 196

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +L  +   +       E L     IA++C+  L+ H  +LP++ +   D+  K+    + 
Sbjct: 197  FLTEKE--IKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVL 253

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
               +  LE+           +   Y +RL +E  VI  M F  YFLIV+D I +AK N++
Sbjct: 254  VTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDV 302

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+
Sbjct: 303  MVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQ 362

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L   
Sbjct: 363  YVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEA 420

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                 F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +     
Sbjct: 421  YQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGL 480

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611
            L  TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFD+ + + L
Sbjct: 481  L--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDNQKVFEL 538

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            L+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+
Sbjct: 539  LSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHNPSKV 598

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ 
Sbjct: 599  QYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQH 658

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  
Sbjct: 659  FIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANI 718

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + +
Sbjct: 719  LSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVK 778

Query: 852  HIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
             I+ E   +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D    
Sbjct: 779  VIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ--- 835

Query: 911  YAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                V     N  ++ F  +    K  + DK  L    +       + E+  LGFY S H
Sbjct: 836  ----VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQH 885

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P+D  K  + K  +  ++ S A    NN  +       +Q +T+ G  + +VT ++  + 
Sbjct: 886  PVD--KKFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIET 940

Query: 1027 YEANFFP 1033
             +   FP
Sbjct: 941  LDGVIFP 947


>gi|331701392|ref|YP_004398351.1| DNA polymerase III subunit alpha [Lactobacillus buchneri NRRL
            B-30929]
 gi|329128735|gb|AEB73288.1| DNA polymerase III, alpha subunit [Lactobacillus buchneri NRRL
            B-30929]
          Length = 1115

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 351/1040 (33%), Positives = 563/1040 (54%), Gaps = 67/1040 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+V LQV SSYSLL+  + + +++ +       A+A+TD N ++ A+EF      A I+P
Sbjct: 2    SYVPLQVISSYSLLQSPIRIADLIAEAKDRGYQALALTDLNVMYGAVEFYDACLKAAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG  L +     L +T++           VL+    +GY  L++L +    + +     
Sbjct: 62   LIGLTLQLP---GLILTDKEY-------GWVLIAKNQQGYANLLKLSTLKMTMPE----- 106

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQ 187
             +  S L +  ++ +++L   +   ++       +  A   +   K L  D   L + + 
Sbjct: 107  -LTASQLGDYLSDLVLILPPAAE--MNDLLLQGRADDAADLIDQVKSLGIDPNALKIGVD 163

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-- 245
             H   D   +  + +LA   ++ LVA +   +L+  DY +  VL  +     ++   +  
Sbjct: 164  YHSS-DSLND-MLSKLAADKQVALVADSPVEYLNATDYFSMQVLKNIGAGEKIANVAQFS 221

Query: 246  PRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             +V P ++L+  +++ + +    L +AL    +I   C+  ++   P LP+F      D 
Sbjct: 222  KQVGP-YWLRPATQIEAQYRQVHLADALTQVDQIVADCNVEIKKQQPKLPQFDTPNGID- 279

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                   LR     GL  RL +  I     A  Y +RLD EL+VI  M F  YFLIV D 
Sbjct: 280  ---SGTYLRQLCETGLADRLKKNQITD---ATPYHRRLDQELSVIHSMGFDNYFLIVWDV 333

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I +A + +I  GPGRGS AGS+ AY LTITD+DP+++ LLFERFLNP+R+ MPD D+D  
Sbjct: 334  INFAHQTDIITGPGRGSAAGSLVAYTLTITDVDPIKYDLLFERFLNPERVQMPDIDLDIP 393

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RDEVI+YV  KYGH+RVAQIITFG+L AK ++RDVGR   +  +Q D+  K IPN  
Sbjct: 394  DDKRDEVIQYVHQKYGHKRVAQIITFGTLAAKQSIRDVGRVFGLNTAQQDQWSKAIPN-- 451

Query: 484  AHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A  V+L+ A+A+  R +      P  + L + +Q LEGL RH STHAAG+V+ D PL  L
Sbjct: 452  AFHVTLKDALANSQRLKNLVADSPLNEALYQTAQALEGLPRHYSTHAAGLVLSDDPLVNL 511

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLI 601
            VP+ ++    L +TQ++  ++E  GL+K DFLGL+ L++L  +L+ +     KV D+S +
Sbjct: 512  VPL-QNGNEGLLMTQYSKDYVESVGLLKMDFLGLRNLSILGDALEQVQLTTGKVLDISAV 570

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD +T  L     T GIFQ ES+G+R  L  + P+  EDI  + +LYRPGP+ NI   
Sbjct: 571  PLDDAKTIQLFADGDTTGIFQFESNGIRNVLRRLHPERFEDIALVNALYRPGPMQNIDEV 630

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK   E +      +  +L+ T GVI+YQEQVM +A  ++G+SL +AD+LRRAM KK 
Sbjct: 631  VKRKTNHEALTYPDDSLKDILQPTYGVIVYQEQVMLVASKMAGFSLGQADILRRAMSKKK 690

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               M++ K +F++GA + G S ++A  +F+ + +FA+YGFNKSHA AY+ ++Y+ A++K 
Sbjct: 691  LGVMEQMKAQFMTGAKQRGYSDSVANKVFDYIERFANYGFNKSHAVAYSKMAYELAYLKV 750

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YP EF  A +    +N  K+K++ Q A+   ++++ P++N     F   D +I + L +
Sbjct: 751  YYPGEFHVALLNSVNNNSVKVKEYIQAAKSMGVKVVGPNINHSEARFTFQDQQIVFGLDS 810

Query: 842  IKGVGTTTARHIM------EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            IKGV     RH M      E   + PF S  DF SR+  K     ++ +L++AGALD F 
Sbjct: 811  IKGV-----RHDMVVDLLAERQQNGPFKSFPDFLSRLPGKYRKVELINALIYAGALDVFP 865

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
            ++R +L+ +     ++   VE +      N  +  K        + +  + +   + E E
Sbjct: 866  FNRSELIAA---APEFISSVELS-----GNSMSLFKALEPKMPKMPEMPLMD---KLEKE 914

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN--NIRLAAMVVSKQQKKTRKGS 1013
               LG Y SGHP + + P+ +++      E+ AT+     NI L   +   +  +T+ G 
Sbjct: 915  NAYLGAYLSGHPTERFAPLAQRLN----AETTATLSSGMKNIYLILYITKVKIIRTKTGK 970

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
            ++ ++  ++   +     FP
Sbjct: 971  QMAFLDGNDQVGQTSVTVFP 990


>gi|285817385|gb|ADC37872.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981]
          Length = 1065

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 335/1028 (32%), Positives = 527/1028 (51%), Gaps = 91/1028 (8%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4    YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                        MT        TV ++VL     +G + L +L S + +         + 
Sbjct: 64   ------------MTIYVTNGLNTVETVVL-AKNNDGLKDLYQLSSEIKM----NSMENVS 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
               LQ+  +  +I+    +    D    F+S +                           
Sbjct: 107  FELLQQFSSNLIIIFKNVADEHRDIVQVFDSHE--------------------------- 139

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
            D Y + Q V       +  V   N  + + +D +    L A+  +  +           H
Sbjct: 140  DTYLDHQSV---LVQGIKHVWIQNVCYQTRQDADTISALAAIRDNAKLDLIHDQEDFGAH 196

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +L  +   +       E L     IA++C+  L+ H  +LP++ +   D+  K+    + 
Sbjct: 197  FLTEKE--IKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVL 253

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
               +  LE+          Y    Y +RL +E  VI  M F  YFLIV+D I +AK N++
Sbjct: 254  VTQLKKLEL---------NYDV--YLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDV 302

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+
Sbjct: 303  MVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQ 362

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L   
Sbjct: 363  YVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEA 420

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                 F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +     
Sbjct: 421  YQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGL 480

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611
            L  TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + L
Sbjct: 481  L--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILIQVKKDLGINIDIEKIPFDDQKVFEL 538

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            L+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+
Sbjct: 539  LSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKV 598

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ 
Sbjct: 599  QYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQH 658

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  
Sbjct: 659  FIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANI 718

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + +
Sbjct: 719  LSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVK 778

Query: 852  HIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
             I+ E   +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D    
Sbjct: 779  VIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ--- 835

Query: 911  YAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                V     N  ++ F  +    K  + DK  L    +       + E+  LGFY S H
Sbjct: 836  ----VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQH 885

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAK 1025
            P+D      +K   K Y          N +   +   K +Q +T+ G  + +VT ++  +
Sbjct: 886  PVD------KKFVAKQYLTIFKLSNAQNYKPILVQFDKVKQIRTKNGQNMAFVTLNDGIE 939

Query: 1026 EYEANFFP 1033
              +   FP
Sbjct: 940  TLDGVIFP 947


>gi|295692868|ref|YP_003601478.1| DNA polymerase iii, alpha subunit [Lactobacillus crispatus ST1]
 gi|295030974|emb|CBL50453.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus ST1]
          Length = 1035

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 334/1028 (32%), Positives = 541/1028 (52%), Gaps = 52/1028 (5%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL     +++++        P + + D N  +  + F + A  AGI+P++G 
Sbjct: 6    LQNISSFTLLSSPTKVSDLIKDAKEKGYPVVGLADVNVTYGLVNFYELAKKAGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI-C 132
            QL ++          G         +++   T +GY  L+ L S + LL +  Q+ ++  
Sbjct: 66   QLRLN----------GLVDSTQKYDLLVFAKTNKGYHNLLRLSSAVNLLTENGQNDKVLT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L+ L +   + LI++       +  A    +  +    +   KKL  D LY+ +   +  
Sbjct: 116  LNELTKYLDDLLIIVPANLKSEL-MALHDTNQALGSDYVRQLKKLTSD-LYLGVYASKAS 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVTP 250
              Y +  V  LA   EL LVA  +S +L   +      L A+A    + Q   P  +   
Sbjct: 174  IDYIDY-VRGLAKQFELSLVAVEDSQYLRPREQFLQKTLRAIAKGDKL-QDILPLAKQAG 231

Query: 251  DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             HYL +   ++  +   DL +A+ NT +IA++C+  +    P+LP++ +   D     EE
Sbjct: 232  SHYLDSAQNVLECYHQYDLDDAINNTWKIAQKCNAEVIFQKPVLPKYHQ---DKFPTSEE 288

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR  A  GL+ R  Q +I       +Y++RL++EL VI +M F  YFLIV D I +  
Sbjct: 289  -YLRYLAQTGLQARFGQKSIPA-----EYQKRLNYELRVINQMGFDDYFLIVWDVINYCH 342

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS  GS+ +Y+L IT++DP++++LLFERFLNP R  MPD D+D    +R+
Sbjct: 343  RVKITTGPGRGSACGSLVSYSLRITEVDPIQYNLLFERFLNPARHEMPDIDLDIPDIQRN 402

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI+Y+  KYG +  AQI+TFG++ AK  LRDVGR   +   ++ +    IP      + 
Sbjct: 403  TVIKYMYQKYGMDHAAQILTFGTMAAKQVLRDVGRVFGLTGPEITKWTHAIPYS-KDKME 461

Query: 489  LQAIADDSRFREARL---ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            L+    +SR  E RL   A P    L + +  LEGL RH S HAAG+VI D  ++ +  +
Sbjct: 462  LKKAYQESR--ELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDDSIAGISGL 519

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
             +     +PVTQ   K++E  GL+K DFLGL+ LT+L   L  + Q+GVK+D + IP +D
Sbjct: 520  -QAGPFGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILALVRQQGVKLDPNTIPLND 578

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L     T  +FQ ES G+R  L  + PD  ED++A+ +LYRPGP+ NI  +  RK
Sbjct: 579  PKTMELFQQGKTDAVFQFESGGIRGVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVARK 638

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG   +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK +  +
Sbjct: 639  NGTATVHYPDPSLKQILQSTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKNQNVI 698

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++ +FI+G  K G  K +   ++  + +FA+YGFN+SHA AY  I++  A++K HYP 
Sbjct: 699  EQERGKFIAGTVKKGHPKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPA 758

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  A   L      K + +   A++  ++I+PP +N   +D+ + D +I   L AIKG+
Sbjct: 759  AFYTA--MLNSSTSAKAQSYSMQAQEAGVRILPPDINHSQLDYTLQDGKILVGLKAIKGL 816

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                A+ I  A+  KP+ S  DF  R+D+K L    +E+L+ AGA D    +R +LL + 
Sbjct: 817  RLDFAKEI--AANTKPYKSFNDFLRRIDAKFLQVDAIEALIMAGAFDSIEDNRNELLLNC 874

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             ++    Q   +N +               D   L+      ++ + E E++ LGF  + 
Sbjct: 875  KDVIANVQLTGQNMSLSE---------ILGDA-PLKPAEPPTAAQKAEMEEKALGFTTTT 924

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             PL   +   +K   +   +      G ++     ++  +Q +T+ G  + + +F++ + 
Sbjct: 925  TPLIAVQKYAQKFNARPLNQFQLNDSGISV---GKLMKLKQIRTKNGKTMAFASFADTSS 981

Query: 1026 EYEANFFP 1033
            E E   FP
Sbjct: 982  EQEIIIFP 989


>gi|16332330|ref|NP_443058.1| DNA polymerase III subunit alpha [Synechocystis sp. PCC 6803]
 gi|1653960|dbj|BAA18870.1| DNA polymerase III alpha subunit [Synechocystis sp. PCC 6803]
          Length = 897

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 300/791 (37%), Positives = 466/791 (58%), Gaps = 59/791 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+      PAIA+TD   ++ A+E  +      I+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAVELLKVCRGKPIKP 61

Query: 70  IIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL--VSRMYLL 122
           IIG ++     DI++    +  +Q           V+L    +GY+ L++L  +S +  +
Sbjct: 62  IIGNEMYVINGDIEINKRHRRFHQ-----------VVLAKNNQGYRNLVKLTTISNLKGI 110

Query: 123 DQGKQSVRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                  R C++  L E   EGLI+ +    G + +A        A +    +K LFGD 
Sbjct: 111 QGSGIFARPCINKELLEQYKEGLIVTSACLGGEVPQAILKGDLDHARQVAKWYKNLFGDD 170

Query: 182 LYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            Y+ +Q H    DR     +V++A   ++ +VATN+S F+S  D EAHD L+ +    ++
Sbjct: 171 YYLEIQDHGSVEDRLVNINLVKIAQELDIKIVATNDSHFISCNDVEAHDALLCIQTGKLI 230

Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSD-LPE-----ALENTVEIARRCSFILQVHAPILPR 294
           +++ R R +   YLK+  EM  +F D LP+     A+ NT+E+A +      +  P +P 
Sbjct: 231 TEEKRLRYSGTEYLKSAEEMHLLFRDHLPDDIIETAIANTLEVADKVEAYSILGEPRIPH 290

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
           +            E  + + A  GL  RL      +      Y++RL++EL ++ +M F 
Sbjct: 291 YPIPP----NHTPETYVEDIAWDGLLERLK--CRERADITPVYKERLEYELRMLEKMGFC 344

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFL+V D+I++A+ + IPVGPGRGS AGS+ AY + IT+IDP+   L+FERFLNP+R S
Sbjct: 345 TYFLVVWDYIKYARDHGIPVGPGRGSAAGSLVAYCMKITNIDPVHHGLIFERFLNPERKS 404

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           MPD D DFC DRRDE+I YV  KYG ++VAQIITF  + +KA L+DV R L +PY++ D+
Sbjct: 405 MPDVDTDFCIDRRDEMIEYVTQKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYAESDK 464

Query: 475 LCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
           + K+IP     P  L+ +  D     +F+     +P V + ++++ ++EG  +    HAA
Sbjct: 465 MAKMIPVSRGKPAKLKVMISDQTPEPQFKARYDNEPWVKKWIDMAIRIEGTNKTFGVHAA 524

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           G+VI   PL Q+VP+ ++    + +TQ+ M+ +E  GL+K DFLGLK LT LQ++++ +A
Sbjct: 525 GVVISSEPLDQIVPLQKNNDGAV-ITQYYMEDVEAMGLLKMDFLGLKNLTTLQRAVELVA 583

Query: 591 Q-RGVKVDLSLIPF------------------DDHETYHLLTTKGTL-GIFQLESSGMRQ 630
           + +G+++DL  +P                   DD +  H L   G L GIFQLES GM+Q
Sbjct: 584 ETKGIELDLDDLPLQERKALQIRARTGSKKLPDDVKKTHKLLEAGDLEGIFQLESQGMKQ 643

Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            +  ++P  IEDI ++++LYRPGP+D   I ++ NRK+G+E+I   H L++P+L ET GV
Sbjct: 644 IVRDLKPSGIEDISSILALYRPGPLDAGLIPIFINRKHGREEISYQHKLLEPILNETYGV 703

Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
           ++YQEQ+M++AQ L+ YSL EAD+LRRAMGKK  EEM K + +F+ G++K+G+   IA N
Sbjct: 704 LVYQEQIMKMAQDLADYSLGEADLLRRAMGKKKAEEMQKHRAKFVDGSTKHGVPSRIAEN 763

Query: 749 IFELLAKFADY 759
           +F+ + KFA+Y
Sbjct: 764 LFDQMVKFAEY 774


>gi|253734514|ref|ZP_04868679.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            TCH130]
 gi|253727568|gb|EES96297.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            TCH130]
          Length = 1065

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 339/1034 (32%), Positives = 535/1034 (51%), Gaps = 103/1034 (9%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4    YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                        MT        TV ++VL     +G + L +L S             I 
Sbjct: 64   ------------MTIYVTNGLNTVETVVL-AKNNDGLKDLYQLSSE------------IK 98

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            ++ L+ +  E L                    + +   ++ FKK+ GD+       HR  
Sbjct: 99   MNALEHVSFELL-------------------KRFSNNMIIIFKKV-GDQ-------HRDI 131

Query: 193  DRYRESQVVQLAYTHELPL-------VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             +  E+      Y   L +       V   N  + + +D +    L A+  +T +     
Sbjct: 132  VQVFETH--NDTYMDHLSISIQGRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHD 189

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                  H+L  +   ++      E L     IA++C   L+ H  +LP++ E   D+  K
Sbjct: 190  QEDFGAHFLTEKE--INQLDINQEYLTQVDVIAQKCDAELKYHQSLLPQY-ETPNDESAK 246

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +    +    +  LE+           +   Y +RL +E  VI  M F  YFLIV+D I 
Sbjct: 247  KYLWRVLVTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIH 295

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK N++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   
Sbjct: 296  YAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDT 355

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+ VI+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+    
Sbjct: 356  RRERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG- 414

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++L        F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+
Sbjct: 415  -ITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPL 473

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             +     L  TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFD
Sbjct: 474  TKGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFD 531

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D + + LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R
Sbjct: 532  DQKVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITR 591

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++   K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  
Sbjct: 592  RHDPSKVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAV 651

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            ++ +++ FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP
Sbjct: 652  LESERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYP 711

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
              F A  ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKG
Sbjct: 712  NYFYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKG 771

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG  + + I+ E   +  +    DF  R+  +   R++LE+L+  GA D FG +R  LLQ
Sbjct: 772  VGYQSVKVIVDERYQNGKYKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQ 831

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVL 959
            ++D        V     N  ++ F  +    K  + DK  L    +       + E+  L
Sbjct: 832  AIDQ-------VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYL 878

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GFY S HP+D  K  + K  +  ++ S A    NN  +       +Q +T+ G  + +V 
Sbjct: 879  GFYVSQHPVD--KKFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVI 933

Query: 1020 FSEPAKEYEANFFP 1033
             ++  +  +   FP
Sbjct: 934  LNDGIETLDGVIFP 947


>gi|283770780|ref|ZP_06343672.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            H19]
 gi|283460927|gb|EFC08017.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            H19]
          Length = 1065

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 333/1027 (32%), Positives = 530/1027 (51%), Gaps = 89/1027 (8%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4    YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                        MT        T+ ++VL      G + L +L S++ +         + 
Sbjct: 64   ------------MTIYVTNGLNTIETVVL-AKDNNGLKDLYQLSSKIKI----NSMENVS 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
               LQ+  +  +I+    +    D    F+S +                           
Sbjct: 107  FELLQQFSSNLIIIFKNVADEHRDIVQVFDSHE--------------------------- 139

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
            D Y + + V       +  V   N  + + +D +    L A+  +T +           H
Sbjct: 140  DTYLDHRSV---LVQGIKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAH 196

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +L  +   +       E L     IA++C+  L+ H  +LP++ +   D+  K+    + 
Sbjct: 197  FLTEKE--IKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVL 253

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
               +  LE+           +   Y +RL +E  VI  M F  YFLIV+D I +AK N++
Sbjct: 254  VTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDV 302

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+
Sbjct: 303  MVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQ 362

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L   
Sbjct: 363  YVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEA 420

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                 F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +     
Sbjct: 421  YQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGL 480

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611
            L  TQ+ M   E  GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFD+ + + L
Sbjct: 481  L--TQWTMTEAEHIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDNQKVFEL 538

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            L+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+
Sbjct: 539  LSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKV 598

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ 
Sbjct: 599  QYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQH 658

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  
Sbjct: 659  FIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANI 718

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + +
Sbjct: 719  LSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVK 778

Query: 852  HIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
             I+ E   +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D    
Sbjct: 779  VIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ--- 835

Query: 911  YAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                V     N  ++ F  +    K  + DK  L    +       + E+  LGFY S H
Sbjct: 836  ----VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSEH 885

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P+D  K  + K  +  ++ S A    NN  +       +Q +T+ G  + +VT ++  + 
Sbjct: 886  PVD--KMFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIET 940

Query: 1027 YEANFFP 1033
             +   FP
Sbjct: 941  LDGVIFP 947


>gi|227889857|ref|ZP_04007662.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849721|gb|EEJ59807.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 1038

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 340/1040 (32%), Positives = 537/1040 (51%), Gaps = 69/1040 (6%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQ  SS++LLE    + N+ +        AIA+TD N  +  ++F + A   GI+P++
Sbjct: 4    VSLQNLSSFTLLESPTKVKNLAENAKKKGYSAIALTDINITYGLVDFYKAAKDTGIKPLL 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG--KQSV 129
            G QL I+          G         ++++    +GY+ ++ L S + LL +   K++V
Sbjct: 64   GMQLRIN----------GLIDEANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENV 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQ 187
                   + +G   LI++T  +     +    N+ ++    L   +        +Y+ + 
Sbjct: 114  LTFEDLKKYLGH--LILITPSNLHSELKMLQTNNPKMGANYLRKLQDSLPSSSSMYLGVY 171

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
               G   Y  + +  LA    LPL A  +  +L+  +      L A+  +T +   ++  
Sbjct: 172  ADSGQQEYI-NYISSLATQFSLPLTAVEDGQYLNRNEQFLRRTLQAIKTNTHLENIEQLA 230

Query: 247  RVTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            +    HYLKN  E+   +   D+ +ALEN  +I + C+  ++   P LP+F +       
Sbjct: 231  KQAGSHYLKNSEELQVSYRKFDIEDALENAEKIGKICTAEIKFQDPQLPKFKQ------- 283

Query: 305  KEEENELRNKAVAGLEV--RLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
                    NK     E    LAQ  +AK ++ Q    Y++RLD+EL VI  M F  YFLI
Sbjct: 284  --------NKFPTSKEYLHALAQEGLAKRFNNQIPAQYQKRLDYELQVINEMGFDDYFLI 335

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D + +A   +I  GPGRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D
Sbjct: 336  VWDVMNFAHSVHITTGPGRGSAAGSLVSYALRITEVDPIEYNLLFERFLNPARQQMPDID 395

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +D   +RRDE+I+Y+  KYG    AQI+TFG+L AK  L+DV R   +   +  R    I
Sbjct: 396  LDIPDNRRDEIIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAI 455

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P+        +A       +     +     L   ++ LE L RH S HAAG+VI D  L
Sbjct: 456  PHSKGKITLAEAYQKSKELQLLVNTNELSKILFATAEHLENLPRHYSIHAAGLVITDDSL 515

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +++V +       +PVTQ     +E  GL+K DFLGL+ LT+L   +  L   G+ +D +
Sbjct: 516  AEIVGLQAGPLG-IPVTQQTKFNVESLGLLKIDFLGLRNLTILGNIVAALRADGIDIDPN 574

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD ET  L     T  +FQ ES G+++ LE + PD  EDI+A+ +LYRPGPI+NI 
Sbjct: 575  QIPLDDQETLALFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPINNID 634

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             + NRK+GKE++    P +  +L  T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM K
Sbjct: 635  HFINRKHGKERVQYPDPSLKKILGTTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSK 694

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  E + +++ +FI GA K G  K  A  +++ +A+FA+YGFN+SHA AY+ I++  A+ 
Sbjct: 695  KNAEVIQRERAKFIEGAIKLGRKKETAEKVYDYIAQFANYGFNRSHAVAYSKIAFWLAYF 754

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYP  F  A +   M N  KI ++   A++  I+I+PP +     DF + + +I   L
Sbjct: 755  KVHYPGAFYLALLNSNMGNRNKIAQYLMQAQEAGIKILPPDIENSKADFSLENGKILVGL 814

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             AI+G+ +   + I+E    +P  S+ DF  ++D+  L+   +E+L+ AG  D    +R 
Sbjct: 815  KAIRGLRSDLLKQILEIK--RPIKSMTDFLWKIDNNLLSAGAVENLIKAGTFDRLAPNRN 872

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF--SVENSSVRFENEQR 957
            +LL+   ++ +  +    N +     +F     T   K+  EK   + E S++  E    
Sbjct: 873  ELLKINKDLVESVKMAGSNLS-----LFE----TLEPKVEEEKMPTAAEKSAMEVE---- 919

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK----KTRKGS 1013
             +GF    +P+   +   RK   K  +   +  +G       + V K  K     T+KG 
Sbjct: 920  AMGFSTGINPIIAVQKYARKFNAKRLQVFESNEQG-------IAVGKLMKVKPITTKKGD 972

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             + +  FS+ + E +   FP
Sbjct: 973  NMAFAVFSDTSGERDFTIFP 992


>gi|253732353|ref|ZP_04866518.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            USA300_TCH959]
 gi|253723875|gb|EES92604.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            USA300_TCH959]
          Length = 1065

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 336/1034 (32%), Positives = 537/1034 (51%), Gaps = 103/1034 (9%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4    YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                        MT        TV ++VL     +G + L +L S             I 
Sbjct: 64   ------------MTIYVTNGLNTVETVVL-AKNNDGLKDLYQLSSE------------IK 98

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            ++ L+ +  E L                    + +   ++ FKK+ GD+       HR  
Sbjct: 99   MNALEHVSFELL-------------------KRFSNNMIIIFKKV-GDQ-------HRDI 131

Query: 193  DRYRESQVVQLAYTHELPL-------VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             +  E+      Y   L +       V   N  + + +D +    L A+  +T +     
Sbjct: 132  VQVFETH--NDTYMDHLSISIQGRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHD 189

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                  H+L  +   ++      E L     IA++C   L+ H  +LP++ E   D+  K
Sbjct: 190  QEDFGAHFLTEKE--INQLDINQEYLTQVDVIAQKCDAELKYHQSLLPQY-ETPNDESAK 246

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +    +    +  LE+           +   Y +RL +E  VI  M F  YFLIV+D I 
Sbjct: 247  KYLWRVLVTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIH 295

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK N++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   
Sbjct: 296  YAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDT 355

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+ VI+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+    
Sbjct: 356  RRERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG- 414

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++L        F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+
Sbjct: 415  -ITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPL 473

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
             +     L  TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFD
Sbjct: 474  TKGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFD 531

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D + + LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R
Sbjct: 532  DQKVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITR 591

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++   K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  
Sbjct: 592  RHDPSKVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAV 651

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            ++ +++ FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP
Sbjct: 652  LESERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYP 711

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
              F A  ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKG
Sbjct: 712  NYFYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKG 771

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG  + + I+ E   +  +    DF  R+  +   R++LE+L+  GA D FG +R  LLQ
Sbjct: 772  VGYQSVKVIVDERYQNGKYKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQ 831

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS----SVRFENEQRVL 959
            ++D +      +E++             G   D +T ++   +      ++  + E+  L
Sbjct: 832  AIDQVLDGDLNIEQD-------------GLLFDILTPKQMYEDKEELPDALISQYEKEYL 878

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GFY S HP+D  K  + K  +  ++ S A    NN  +       +Q +T+ G  + +V 
Sbjct: 879  GFYVSQHPVD--KKFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVI 933

Query: 1020 FSEPAKEYEANFFP 1033
             ++  +  +   FP
Sbjct: 934  LNDGIETLDGVIFP 947


>gi|268319606|ref|YP_003293262.1| hypothetical protein FI9785_1131 [Lactobacillus johnsonii FI9785]
 gi|262397981|emb|CAX66995.1| dnaE [Lactobacillus johnsonii FI9785]
          Length = 1038

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 340/1036 (32%), Positives = 538/1036 (51%), Gaps = 61/1036 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQ  SS++LLE    + N+ +        AIA+TD N  +  ++F + A   GI+P++
Sbjct: 4    VSLQNLSSFTLLESPTKVKNLAENAKKKGYSAIALTDINITYGLVDFYKAAKDTGIKPLL 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG--KQSV 129
            G QL I+          G         ++++    +GY+ ++ L S + LL +   K++V
Sbjct: 64   GMQLRIN----------GLIDEANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENV 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQ 187
                   + +G   LI++T  +     +    N+ ++    L   +        +Y+ + 
Sbjct: 114  LTFEDLKKYLGH--LILITPSNLHSELKMLQTNNPKMGANYLRKLQDSLPSSSSMYLGVY 171

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
               G   Y  + +  LA    LPL A  +  +L+  +      L A+  +T +   ++  
Sbjct: 172  ADSGQQEYI-NYIRSLATQFSLPLTAVEDGQYLNRNEQFLRRTLQAIKTNTHLENVEQLA 230

Query: 247  RVTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            +    HYLKN  E+   +   D+ +ALEN  +I + C+  ++   P LP+F +       
Sbjct: 231  KQAGSHYLKNSEELQVSYRKFDIEDALENAEKIGKICTAEIKFQDPQLPKFKQ------- 283

Query: 305  KEEENELRNKAVAGLEV--RLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
                    NK     E    LAQ  +AK ++ Q    Y++RLD+EL VI  M F  YFLI
Sbjct: 284  --------NKFPTSKEYLHALAQEGLAKRFNDQIPAQYQKRLDYELQVINEMGFDNYFLI 335

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D + +A   +I  GPGRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D
Sbjct: 336  VWDVMNFAHSVHITTGPGRGSAAGSLVSYALRITEVDPIEYNLLFERFLNPARQQMPDID 395

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +D   +RRDEVI+Y+  KYG    AQI+TFG+L AK  L+DV R   +   +  R    I
Sbjct: 396  LDIPDNRRDEVIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAI 455

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P+        +A       +     +     L   ++ LE L RH S HAAG+VI D  L
Sbjct: 456  PHSKGKITLAEAYQKSKELQLLVNTNELSKILFATAEHLENLPRHYSIHAAGLVITDDSL 515

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +++V +       +PVTQ     +E  GL+K DFLGL+ LT+L   +  L   G+ +D +
Sbjct: 516  AEIVGLQAGPLG-IPVTQQTKLNVESLGLLKIDFLGLRNLTILGNIVAALRADGIDIDPN 574

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD ET  L     T  +FQ ES G+++ LE + PD  EDI+A+ +LYRPGPI+NI 
Sbjct: 575  QIPLDDQETLALFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPINNID 634

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             + NRK+GKE++    P +  +L  T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM K
Sbjct: 635  HFINRKHGKERVQYPDPSLKKILGTTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSK 694

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  E + +++ +FI GA K G  K  A  +++ +A+FA+YGFN+SHA AY+ I++  A+ 
Sbjct: 695  KNAEVIQRERAKFIEGAIKLGRKKETAEKVYDYIAQFANYGFNRSHAVAYSKIAFWLAYF 754

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYP  F  A +   M N  KI ++   A++  I+I+PP +     DF + + +I   L
Sbjct: 755  KVHYPGAFYLALLNSNMGNRHKIAQYLMQAQEAGIKILPPDIENSKADFSLENGKILVGL 814

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             AI+G+ +   + I+E    +P  S+ DF  ++D+  L+   + +L+ AG  D    +R 
Sbjct: 815  KAIRGLRSDLLKQILEIK--RPIKSMTDFLWKIDNNLLSADAVGNLIKAGTFDRLAPNRN 872

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF--SVENSSVRFENEQR 957
            +LL+   ++ +  +    N +     +F     T   K+  EK   + E S++  E    
Sbjct: 873  ELLKINKDLVESVKMAGSNLS-----LFE----TLEPKVEEEKMPTAAEKSAMEVE---- 919

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             +GF    +P+   +   RK   K  +   +  +G  I +  ++  K Q  T+KG  + +
Sbjct: 920  AMGFSTGINPIIAVQKYARKFNAKRLQVFESNEQG--IAVGKLMKVK-QITTKKGDNMAF 976

Query: 1018 VTFSEPAKEYEANFFP 1033
              FS+ + E +   FP
Sbjct: 977  AVFSDTSGEKDFTIFP 992


>gi|228982552|ref|ZP_04142811.1| hypothetical protein bthur0002_56850 [Bacillus thuringiensis Bt407]
 gi|228776735|gb|EEM25043.1| hypothetical protein bthur0002_56850 [Bacillus thuringiensis Bt407]
          Length = 1237

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 343/1008 (34%), Positives = 539/1008 (53%), Gaps = 78/1008 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V L  H+ YSLL+GA  ++    ++ A  + A AITD   ++  L+F +K   A  +PI
Sbjct: 74   YVSLHGHTGYSLLDGATKIH----EMVAKTEWASAITDHGVMYGTLDFYKKMKKANKKPI 129

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +  I+  D  K   +GK         +LL   A GY+ L++L S  +     K  V+
Sbjct: 130  LGFEAYIETLDGKK---EGKHQ-------LLLAINATGYRNLVKLTSMGFENKYYKPHVK 179

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
              L WL++  +EG++  +    G + +A       +A K +     +FG +  Y+ +QRH
Sbjct: 180  --LEWLEKY-SEGVVSTSSCLGGLVPQAIIKGDMDLARKTVQKMIDIFGKENYYIEIQRH 236

Query: 190  RGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                   E +VV     QLA    L  +AT++S +   ED   H++L+ +   T +   +
Sbjct: 237  GC----EEEEVVNPALLQLAEEFGLKAIATSDSHYTEIEDASVHEILLCIGTKTTMDDPN 292

Query: 245  RPRVTPD--HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R  V P   +++    EM  +F D+PE L+NT+++A R +  +Q+    LP F   E  +
Sbjct: 293  R-MVFPGSGYHIHTSEEMEDLFWDMPELLDNTLDLAERINIDIQLGEIYLPEFPLPEGFE 351

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             Q +    L   A  G   R       K + +++YR+RL FE+  I  M F GYF+IV D
Sbjct: 352  SQADYFEHL---AWEGFAKRFKG---QKEFKSKEYRERLTFEIETIKTMGFPGYFVIVWD 405

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI++AK+  I VGPGRGS  GS+ AYAL ITDIDP+ + L+FERFLNPDR+SMPD DIDF
Sbjct: 406  FIRFAKERGILVGPGRGSACGSLVAYALDITDIDPIPYGLIFERFLNPDRISMPDIDIDF 465

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI YV+  YG E V++IITFG+L AK ++RDV R L  P   +  +   IP  
Sbjct: 466  EDTRREEVIDYVKELYGEEAVSRIITFGTLAAKVSVRDVARVLDKPLGNM--IANAIPEK 523

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   ++ +A+ +   F     +D  V  +++I+ ++EGL R+ S HA G++I    ++  
Sbjct: 524  PGMTLN-KALNESPEFYNMYHSDAEVKEIVDIALRIEGLPRNVSQHACGVIIAPSAVTDH 582

Query: 543  VPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQR---GV 594
            +P       D  +    TQ+N    E+ GL+K DFLGL+T+ ++ ++ +D   +R   G+
Sbjct: 583  IPQVLLENTDTGAYEHTTQYNKDECEEMGLLKMDFLGLRTMGVMGRAFIDINKKRKELGL 642

Query: 595  K-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC-----------IED 642
            + + L  IP DD   Y  +    T G+FQLES+GM   +  +  D             E 
Sbjct: 643  EPITLESIPLDDIRVYEYIAKGNTAGVFQLESAGMTNFMMELFQDAHTLDAEMGKQLFER 702

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            +IA +SLYRPGP+D I  Y       E I    P + P+L+ T  +I+YQEQ M I + L
Sbjct: 703  LIAGISLYRPGPLDEIPNYIKNMLKPEGIEYDVPQLQPILETTYNIIVYQEQCMFIVREL 762

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLA 754
            + ++  ++D +R+ M KK++  +++  E F        I+G   NGI + IA+ ++E + 
Sbjct: 763  ANFTRGQSDTIRKGMAKKVEALLNEYGEYFVHGSEEKGITGCVANGIDEHIAIALWERMK 822

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
            KF  Y FNKSHA  YA I+ +T ++  +YP E++ A++   +   +KIK +   +++  I
Sbjct: 823  KFGRYAFNKSHATGYANIAIKTGFLAYYYPTEYMCATLNSFITMSDKIKAYMAVSKRQKI 882

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
             ++PP VN     F V  N I + L  I+ +G  + R I E      F + +D   R+  
Sbjct: 883  DVLPPDVNKSREVFTVEGNSIRFGLQGIRNMGKISIRLIEERDTRGDFRNFQDCAVRMAK 942

Query: 875  -KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             +K++RRVLE+L+F+GA+D F  +R   L  LD +   A    K+  +   +IF     +
Sbjct: 943  YQKVDRRVLEALIFSGAVDSFEGTRNSKLMMLDALLLVASQERKDYQSGQLSIFDIPLLS 1002

Query: 934  FSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
              DKI      TL +F+++    + E E+   GFY S HPLD Y+ +L
Sbjct: 1003 -QDKIREVLTPTLTEFNID---FKLEKEKEFAGFYISAHPLDSYETLL 1046


>gi|320527694|ref|ZP_08028866.1| putative DNA polymerase III DnaE [Solobacterium moorei F0204]
 gi|320131937|gb|EFW24495.1| putative DNA polymerase III DnaE [Solobacterium moorei F0204]
          Length = 1021

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 342/1027 (33%), Positives = 534/1027 (51%), Gaps = 52/1027 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL V S Y+LL+  + +  ++         ++A+TD + +     F  +    GI PII
Sbjct: 3    THLFVRSCYTLLDSTIRIPELVSTAKKYGYQSVALTDHHVMHGVARFLHECKKEGIHPII 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++D+         ++ K PF      +LL    +GY  L++L S   +L  G++ V  
Sbjct: 63   GLEVDV-------FYHEQKVPF------LLLAKNNKGYTNLMKLSS---MLCDGREYV-- 104

Query: 132  CLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              ++ + I   E   ++  G  G  D            ++L   K  F            
Sbjct: 105  --TYEELIQYCEHNFLVVYGEGGYFDAELISEDRTGITQKLALMKSEFPPFDIAISYEET 162

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
               R + + +  LA    +  +A N   +L ++DYE   VL A+   T +  K+   +T 
Sbjct: 163  SLWRSKNAVLKALAKAQGIQTIALNKIYYLGQKDYETLKVLSAIKQGTTLRDKNVTPITG 222

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             ++L +  EM  I+    + L  T EIA  C     +    +P +  K  D I  E+   
Sbjct: 223  RYFL-SIPEMEQIYD--ADDLRRTDEIASECHCDGNLEKTGIPEYPLK--DGITAEQY-- 275

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L    +AGL+ RL       G     Y +RL +EL VI +M F  YFLIV DFI++ ++ 
Sbjct: 276  LPQLCLAGLKKRL------NGDLKPAYVERLKYELQVIHQMGFEDYFLIVYDFIRYGRQK 329

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I +GPGRGS AGS+ AY L IT +DPL+++LLFERFLN +R+SMPD D D     R E+
Sbjct: 330  GIYIGPGRGSAAGSLVAYCLGITMVDPLQYNLLFERFLNAERVSMPDIDTDIPDIHRQEI 389

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I YV  KYG + +A IITF +L ++A LRDVG+A+ +P  ++D +  LIP  P   +  +
Sbjct: 390  IDYVYQKYGEQHIANIITFDTLASRAVLRDVGKAMDIPKREIDMIVGLIPQTPKITLK-K 448

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A     + R    A P +     +++++EGL ++ S HAAGIV+  +P+ +++P  + + 
Sbjct: 449  AYEQKEKLRVLLNASPQLMTYFNMAKRIEGLPKNKSIHAAGIVMSGKPIEEIIPTIQ-MA 507

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
              +  TQF   ++E+ GLIK DFLGLK LT + + +  + ++     +  IP  D +TY 
Sbjct: 508  EGMKTTQFVGNYLEERGLIKMDFLGLKNLTTIDEIVQMIHKKNPDFHILSIPLHDAKTYR 567

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T+G+FQ ES GMR  L  M+P+C EDIIA ++L+RPGP D I VY   +     
Sbjct: 568  LFAQADTIGVFQFESDGMRNLLRKMKPNCFEDIIAALALFRPGPKDQINVYLEGRKNPSS 627

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +V     ++P+LKET GV IYQEQVM +AQ+ + +SL +AD+LR+A+ KK +EE+   ++
Sbjct: 628  VVYPSKELEPILKETYGVTIYQEQVMLMAQIAAKFSLVKADILRKAISKKNEEELAGLRQ 687

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             ++ G  +NG S  +A  +F+L  KFA YGFNKSHA AY +++YQ A++K +YP+EF  +
Sbjct: 688  EYVRGCKENGYSDEMASYLFDLAEKFAGYGFNKSHAVAYGLVAYQLAYLKANYPLEFYTS 747

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +   + +  K   +  + R+ +I I  P VN     +      I   L+ IK VGT  A
Sbjct: 748  ILNSVIGDSTKSAIYITECRRKHISIEAPDVNRSTDIYYHNGKSIILPLSIIKDVGTLAA 807

Query: 851  RHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            R I++    K  F    DF +R   +K+NR  LE L+ AGALD F   R  ++ +LD+  
Sbjct: 808  RTILDERDKKGSFGDYFDFVARAVLRKINRTQLERLISAGALDGFDLGRTTMMNTLDDAV 867

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPL 968
            KYA+ V+     +     + +    S  + +  K S E  S   ENE+  LGF     P+
Sbjct: 868  KYAKLVQVPFGTQ----LSIDPQLVSKPVVVRMKDSQEELS---ENEKAALGFNLGEQPI 920

Query: 969  DVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
                 + +K+GI      +A +  N    R  A + S +Q +TRKG  + ++  ++   E
Sbjct: 921  ---VHLRQKLGIT--YPPLAELNSNRGLYRGFAYIQSVRQIRTRKGDLMCFLKLTDETGE 975

Query: 1027 YEANFFP 1033
             +    P
Sbjct: 976  SDMAVMP 982


>gi|227879083|ref|ZP_03996972.1| possible DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256843072|ref|ZP_05548560.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256850276|ref|ZP_05555705.1| DNA polymerase III alpha-chain [Lactobacillus crispatus MV-1A-US]
 gi|262046332|ref|ZP_06019294.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US]
 gi|293381286|ref|ZP_06627289.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 214-1]
 gi|312977257|ref|ZP_07789005.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus CTV-05]
 gi|227861324|gb|EEJ68954.1| possible DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256614492|gb|EEU19693.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256712913|gb|EEU27905.1| DNA polymerase III alpha-chain [Lactobacillus crispatus MV-1A-US]
 gi|260573203|gb|EEX29761.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US]
 gi|290922102|gb|EFD99101.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 214-1]
 gi|310895688|gb|EFQ44754.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus CTV-05]
          Length = 1035

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 334/1028 (32%), Positives = 541/1028 (52%), Gaps = 52/1028 (5%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL     +++++        P + + D N  +  + F + A  AGI+P++G 
Sbjct: 6    LQNISSFTLLSSPTKVSDLIKDAKEKGYPVVGLADVNVTYGLVNFYELAKKAGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI-C 132
            QL ++          G         +++   T +GY  L+ L S + LL +  Q+ ++  
Sbjct: 66   QLRLN----------GLVDSTQKYDLLVFAKTNKGYHNLLRLSSAVNLLTENGQNDKVLT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L+ L +   + LI++       +  A    +  +    +   KKL  D LY+ +   +  
Sbjct: 116  LNELTKYLDDLLIIVPANLKSEL-MALHDTNQALGSDYVRQLKKLTFD-LYLGVYASKAS 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVTP 250
              Y +  V  LA   EL LVA  +S +L   +      L A+A    + Q   P  +   
Sbjct: 174  IDYIDY-VRGLAKQFELSLVAVEDSQYLRPREQFLQKTLRAIAKGDKL-QDILPLAKQAG 231

Query: 251  DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             HYL +   ++  +   DL +A+ NT +IA++C+  +    P+LP++ +   D     EE
Sbjct: 232  SHYLDSAQNVLERYHQYDLDDAINNTWKIAQKCNAEVIFQKPVLPKYHQ---DKFPTSEE 288

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR  A  GL+ R  Q +I       +Y++RL++EL VI +M F  YFLIV D I +  
Sbjct: 289  -YLRYLAQTGLQARFGQKSIPA-----EYQKRLNYELRVINQMGFDDYFLIVWDVINYCH 342

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS  GS+ +Y+L IT++DP++++LLFERFLNP R  MPD D+D    +R+
Sbjct: 343  RVKITTGPGRGSACGSLVSYSLRITEVDPIQYNLLFERFLNPARHEMPDIDLDIPDIQRN 402

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI+Y+  KYG +  AQI+TFG++ AK  LRDVGR   +   ++ +    IP      + 
Sbjct: 403  TVIKYMYQKYGMDHAAQILTFGTMAAKQVLRDVGRVFGLTGPEITKWTHAIPYS-KDKMG 461

Query: 489  LQAIADDSRFREARL---ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            L+    +SR  E RL   A P    L + +  LEGL RH S HAAG+VI D  ++ +  +
Sbjct: 462  LKKAYQESR--ELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDDSIAGISGL 519

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
             +     +PVTQ   K++E  GL+K DFLGL+ LT+L   L  + Q+GVK+D + IP +D
Sbjct: 520  -QAGPFGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILALVRQQGVKLDPNTIPLND 578

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L     T  +FQ ES G+R  L  + PD  ED++A+ +LYRPGP+ NI  +  RK
Sbjct: 579  PKTMELFQQGKTDAVFQFESGGIRGVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVARK 638

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG   +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK +  +
Sbjct: 639  NGTATVHYPDPSLKQILQSTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKNQNVI 698

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++ +FI+G  K G  K +   ++  + +FA+YGFN+SHA AY  I++  A++K HYP 
Sbjct: 699  EQERGKFIAGTVKKGHPKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPA 758

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  A   L      K + +   A++  ++I+PP +N   +D+ + D +I   L AIKG+
Sbjct: 759  AFYTA--MLNSSTSAKAQSYSMQAQEAGVRILPPDINHSQLDYTLQDGKILVGLKAIKGL 816

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                A+ I  A+  KP+ S  DF  R+D+K L    +E+L+ AGA D    +R +LL + 
Sbjct: 817  RLDFAKEI--AANTKPYKSFNDFLRRIDAKFLQVDAIEALIMAGAFDSIEDNRNELLLNC 874

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             ++    Q   +N +               D   L+      ++ + E E++ LGF  + 
Sbjct: 875  KDVIANVQLTGQNMSLSE---------ILGDA-PLKPAEPPTAAQKAEMEEKALGFTTTT 924

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             PL   +   +K   +   +      G ++     ++  +Q +T+ G  + + +F++ + 
Sbjct: 925  TPLIAVQKYAQKFNARPLNQFQLNDSGISV---GKLMKLKQIRTKNGKTMAFASFADTSS 981

Query: 1026 EYEANFFP 1033
            E E   FP
Sbjct: 982  EQEIIIFP 989


>gi|298492518|ref|YP_003722695.1| DNA polymerase III subunit alpha ['Nostoc azollae' 0708]
 gi|298234436|gb|ADI65572.1| DNA polymerase III, alpha subunit ['Nostoc azollae' 0708]
          Length = 877

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 311/820 (37%), Positives = 471/820 (57%), Gaps = 80/820 (9%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+       AIA+TD   ++ A+E  +   +  I+P
Sbjct: 2   SFVPLHIHSDYSLLDGASQLPELVDQAITLGMKAIALTDHGVMYGAVELIKVCRSKNIKP 61

Query: 70  IIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           IIG ++     DI+ Q+     +Q           V+L    +GY+ L++L +  +L  Q
Sbjct: 62  IIGNEMYIINGDIEKQERRPKYHQ-----------VVLAKNTKGYRNLVKLTTISHL--Q 108

Query: 125 GKQS----VRICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
           G Q      R C++   L+E   EGLI+ +    G I +A        A K    +K++F
Sbjct: 109 GVQGKGIFSRPCINKNSLKEY-KEGLIVTSACLGGEIPQAILSKRPDAARKVAKWYKEVF 167

Query: 179 GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
           G+  Y+ +Q H    DR    ++V++A    +  +ATN+S ++S  D EAHD L+ +   
Sbjct: 168 GEDFYLEIQDHGSQEDRIVNVEIVKIARELGIKFIATNDSHYISCFDVEAHDALLCIQTG 227

Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCSFILQVHAPI 291
            ++S+  R R +   YLK+  EM  +F D LP     EA+  T E+  +      +  P 
Sbjct: 228 QLISEDKRMRYSGTEYLKSAQEMQQLFRDHLPDYVIAEAIATTEEVGDKIEPYHIMDEPK 287

Query: 292 LPR--FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
           +P          D   EE       A  GL  RL + +  +    Q Y++RL++EL ++ 
Sbjct: 288 IPTPPIPSGHTPDTYAEE------IAWQGLLERLNRKS--RSEVDQIYKERLEYELKMLQ 339

Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
           RM FS YFL+V D+I++A+ NNIPVGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLN
Sbjct: 340 RMGFSTYFLVVWDYIKFARDNNIPVGPGRGSAAGSLVAYAMRITNIDPVHHGLLFERFLN 399

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
           P+R SMPD D DFC ++RD+VI YV NKYG +RVAQIITF  L +KA L+DV R L +PY
Sbjct: 400 PERKSMPDIDTDFCIEKRDQVIEYVTNKYGADRVAQIITFNRLTSKAVLKDVARVLDIPY 459

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHA 525
            + D++ K+IP     P  L+ +  +      F+E    D  +   L+++ ++EG  +  
Sbjct: 460 GEADKMAKMIPVVRGKPTKLKVMVSNETPAPEFKEKYDHDAKIRHWLDMAMRIEGTNKTF 519

Query: 526 STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
             HAAG+VI   PL ++VP+ R+    + +TQ+ M+ +E  GL+K DFLGL+ LTL+QK+
Sbjct: 520 GVHAAGVVISAEPLDEIVPLQRNNDGSV-ITQYFMEDLESLGLLKMDFLGLRNLTLIQKT 578

Query: 586 LDFLAQ-RGVKVD-------------------LSLIPFDDHETYHLLTTKGTLGIFQLES 625
           +D + +  G K+D                    S +P +  + Y LL +    G+FQLES
Sbjct: 579 IDLIQETNGYKIDPDEITGQERKAQHILAKGQHSTLPKEVQKAYSLLESGDLEGVFQLES 638

Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK 683
           SGM+Q +  ++P  IEDI ++++LYRPGP+D  ++  + NRK+ +E+I     +++P+L 
Sbjct: 639 SGMKQIVRDLKPSNIEDISSILALYRPGPLDAGLIPKFINRKHRREEIEYETGILEPILN 698

Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
           ET G+++YQEQ+M+IAQ ++GYSL +AD+LRRAMGKK   EM KQ+E+FI GA KNG+ K
Sbjct: 699 ETYGIMVYQEQIMKIAQDMAGYSLGQADLLRRAMGKKKVSEMQKQEEKFIDGAMKNGVKK 758

Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +A  +F  + KFA+Y            +SY+T  +   Y
Sbjct: 759 QVAEKLFADMLKFAEY-----------CLSYKTEVLTVEY 787


>gi|90961842|ref|YP_535758.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118]
 gi|90821036|gb|ABD99675.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118]
          Length = 1097

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 343/1041 (32%), Positives = 548/1041 (52%), Gaps = 79/1041 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV SSYSLL+  L ++  +         A+ +TD N+++  L+F  +   AGI+PI
Sbjct: 2    YAPLQVLSSYSLLQSPLRISEYVKLGKELGYSALVLTDINSMYGVLDFYHECVKAGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-RMYLLDQGKQSV 129
            IG  L             G   +      + +   + GYQ L+ + S R+  +D+  +++
Sbjct: 62   IGITL-----------QSGDDEY------IFIAKNSNGYQNLMNISSKRLTAVDENYKNI 104

Query: 130  ---RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                    +LQ++     I++   S   ++      S QV E + L       + +Y  +
Sbjct: 105  FKLTDITEYLQDV-----IVILNPSYLTVNDII---SDQVTELQTLVSA---AETIYYGV 153

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
              +   DR   +  +  A   +L  +      +L E DY +  VL A+     V+     
Sbjct: 154  NPN---DRDAINNDLMAAEKLQLETILLTPVKYLKERDYFSTKVLQAIGTGENVNPNWNF 210

Query: 247  RVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +    +YL    E   + +D L  A +N + +  +C+  L      LP F  KE + +  
Sbjct: 211  K-NDGNYLHTPEEYGRLGTDYLSNAYQNAINVIAQCNLTLNFPKTQLPHF--KETNGLSS 267

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            E    LR     GL  R+A+  I    + ++Y+ RLD+EL+VI RM F  YFLIV D   
Sbjct: 268  EAF--LRKLCQEGLAKRIAEENIK---NQEEYQNRLDYELSVIHRMGFDDYFLIVWDVTN 322

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A +NNI  GPGRGS AGS+ +Y L ITDIDP+++ L+FERFLN +R  MPD D+D    
Sbjct: 323  FAHENNILTGPGRGSAAGSLVSYTLYITDIDPIKYDLIFERFLNEERAQMPDIDLDIPDI 382

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            +RD +I Y+  KYG + +AQIITFG+L+ K  LRDV R   +   + D   K IP +  +
Sbjct: 383  KRDTIIEYLHQKYGQQHMAQIITFGTLKTKQVLRDVARVFDLKTYEADAWSKAIPKE--Y 440

Query: 486  PVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             ++L+     S+  +  +AD S +RLL E +  LEGL RH STHAAGI++ D  L   VP
Sbjct: 441  GITLKEAYASSQSLKNLVADNSKNRLLFETAIALEGLPRHYSTHAAGIILSDDDLVDHVP 500

Query: 545  MYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--I 601
            +   +  D + ++QF    +E+ GL+K DFLGL+ L++L+ ++  L ++G  +D  +  I
Sbjct: 501  V--QIGGDGILMSQFAKNQVEEVGLLKMDFLGLRNLSILENTIT-LIKKGYHIDFDIRKI 557

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
              DD ET  +     T GIFQ ES+G+R  L  ++P   ED+ A+ +LYRPGPI NI  +
Sbjct: 558  NLDDPETLKIYQNAETSGIFQFESAGIRGVLTKLKPTSFEDVAAVNALYRPGPIQNIDEF 617

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK+G+  I      ++ +LK+T G+++YQEQVMQ+A  + G++L +AD LRRAM KK 
Sbjct: 618  IARKHGERPITYPSKELEGILKQTYGIMVYQEQVMQVASTMGGFTLGQADSLRRAMSKKK 677

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             + + + +  FI+GA K G +  +A  ++  + +F DYGFN+SHA AY+ +S++ A++K 
Sbjct: 678  HDIISRMEVMFINGAMKKGYTHEVAKKVYAYIMEFGDYGFNRSHAVAYSKMSFELAYIKA 737

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP  F AA +   + N  K K +  +A+   +++  P +N     + + +  IY+ L+ 
Sbjct: 738  HYPAAFFAALLNSVIGNPRKTKDYVLEAKNKGVKVHHPDINISQSLYILRNGGIYFGLSC 797

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK +     + I+ E      F ++EDF  R+D + L R ++E L+++G  D FG SR +
Sbjct: 798  IKSLRKNFLQDILQERKRSGIFKNMEDFLQRIDKRYLKRELIEILIYSGVFDTFGQSRKE 857

Query: 901  LL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            LL    + L NI+     VE        +I A +      K T+EK  + N  +  E E 
Sbjct: 858  LLAMLPRLLSNIELSGNNVEL------FSILAPK------KTTVEKIEISNDEL-LEKEN 904

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKK---TRKG 1012
              LG Y SGHP++ Y  ++           V+ I   N  +  +M++  +  K   T+ G
Sbjct: 905  YYLGAYLSGHPVEKYAELIYLTN----STRVSQINESNKDKYVSMILQIKVIKIIRTKNG 960

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
            S++ +VT ++     +  FFP
Sbjct: 961  SQMAFVTAADQTGNMDLTFFP 981


>gi|227890867|ref|ZP_04008672.1| DNA polymerase III alpha subunit [Lactobacillus salivarius ATCC
            11741]
 gi|227867276|gb|EEJ74697.1| DNA polymerase III alpha subunit [Lactobacillus salivarius ATCC
            11741]
          Length = 1109

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 342/1043 (32%), Positives = 549/1043 (52%), Gaps = 73/1043 (6%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E+   +  LQV SSYSLL+  L ++  +         A+ +TD N+++  L+F  +   A
Sbjct: 9    ERYYMYAPLQVLSSYSLLQSPLRISEYVKLGKELGYSALVLTDINSMYGVLDFYHECVKA 68

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-RMYLLDQ 124
            GI+PIIG  L                   +    + +   + GYQ L+ + S R+  +D+
Sbjct: 69   GIKPIIGITLQ-----------------SSDDEYIFIAKNSNGYQNLMNISSKRLTAVDE 111

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              +++   L+ + E   + +++L        D      S QV E + L       + +Y 
Sbjct: 112  NYKNI-FKLTDITEYLQDVIVVLNPSYLTVND----IISDQVTELQTLVSA---AETIYY 163

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             +  +   DR   +  +  A   +L  +      +L E DY +  VL A+     V+   
Sbjct: 164  GVNPN---DRDAINNDLMAAEKLQLETILLTPVKYLKERDYFSTKVLQAIGTGENVNPNW 220

Query: 245  RPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              +    +YL    E   + +D L  A +N + +  +C+  L      LP F  KE + +
Sbjct: 221  NFK-NDGNYLHTPEEYERLGTDYLSSAYQNAINVIAQCNLTLNFPKTQLPHF--KETNGL 277

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              E+   LR     GL  R+A+  I    + ++Y+ RLD+EL+VI RM F  YFLIV D 
Sbjct: 278  NSEDF--LRKLCQEGLAKRIAEENIK---NQEEYQNRLDYELSVIHRMGFDDYFLIVWDV 332

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
              +A +NNI  GPGRGS AGS+ +Y L ITDIDP+++ L+FERFLN +R  MPD D+D  
Sbjct: 333  TNFAHENNILTGPGRGSAAGSLVSYTLYITDIDPIKYDLIFERFLNEERAQMPDIDLDIP 392

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              +RD +I Y+  KYG + +AQIITFG+L+ K  LRDV R   +   + D   K IP + 
Sbjct: 393  DIKRDTIIEYLHQKYGQQHMAQIITFGTLKTKQVLRDVARVFDLKTYEADAWSKAIPKE- 451

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
             + ++L+     S+  +  +AD S +RLL E +  LEGL RH STHAAGI++ D  L   
Sbjct: 452  -YGITLKEAYASSQSLKNLVADNSKNRLLFETAIALEGLPRHYSTHAAGIILSDDDLVDH 510

Query: 543  VPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600
            VP+   +  D + ++QF    +E+ GL+K DFLGL+ L++L+ ++  L ++G  +D  + 
Sbjct: 511  VPV--QIGGDGILMSQFAKNQVEEVGLLKMDFLGLRNLSILENTIT-LIKKGYHIDFDIR 567

Query: 601  -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I  DD ET  +     T GIFQ ES+G+R  L  ++P   ED+ A+ +LYRPGPI NI 
Sbjct: 568  KINLDDPETLKIYQNAETSGIFQFESAGIRGVLTKLKPTSFEDVAAVNALYRPGPIQNID 627

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RK+G+  I      ++ +LK+T G+++YQEQVMQ+A  + G++L +AD LRRAM K
Sbjct: 628  EFIARKHGERPITYPSKELEGILKQTYGIMVYQEQVMQVASTMGGFTLGQADSLRRAMSK 687

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  + + + +  FI+GA K G +  +A  ++  + +F DYGFN+SHA AY+ +S++ A++
Sbjct: 688  KKHDIISRMEVMFINGAMKKGYTHEVAKKVYAYIMEFGDYGFNRSHAVAYSKMSFELAYI 747

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYP  F AA +   + N  K K +  +A+   +++  P +N     + + +  IY+ L
Sbjct: 748  KAHYPAAFFAALLNSVIGNPRKTKDYVLEAKNKGVKVHHPDINISQSLYILRNGEIYFGL 807

Query: 840  AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            + IK +     + I+ E      F ++EDF  R++ + L R ++E L+++G  D FG SR
Sbjct: 808  SCIKSLRKNFLQDILQERKRSGIFKNMEDFLQRINKRYLKRELIEILIYSGVFDTFGQSR 867

Query: 899  MQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
             +LL    + L NI+     VE        +I A +      K T+EK  + N  +  E 
Sbjct: 868  KELLAMLPRLLSNIELSGNNVEL------FSILAPK------KTTVEKIEISNDEL-LEK 914

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKK---TR 1010
            E   LG Y SGHP++ Y  ++           V+ I   N  +  +M++  +  K   T+
Sbjct: 915  ENYYLGAYLSGHPVEKYVELIYLTN----STRVSQINESNKDKYVSMILQIKVIKIIRTK 970

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
             GS++ +VT ++     +  FFP
Sbjct: 971  NGSQMAFVTAADQTGNMDLTFFP 993


>gi|323342047|ref|ZP_08082280.1| DNA-directed DNA polymerase III alpha subunit [Erysipelothrix
            rhusiopathiae ATCC 19414]
 gi|322464472|gb|EFY09665.1| DNA-directed DNA polymerase III alpha subunit [Erysipelothrix
            rhusiopathiae ATCC 19414]
          Length = 1030

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 348/1036 (33%), Positives = 546/1036 (52%), Gaps = 78/1036 (7%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL V S YSLL+G + +  I +K   ++  +IA+TD + LF AL+F   A    I+PI G
Sbjct: 13   HLMVRSHYSLLKGMMPVELICEKAKHNESKSIALTDRHVLFGALDFYDAARKHHIKPIYG 72

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             ++ I ++D             +    ++L  T EGYQ LI L    YLL     S +  
Sbjct: 73   MEITI-LEDE------------SYYDSLVLARTNEGYQGLIHL---SYLL-----SKQAY 111

Query: 133  LSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHR 190
            +S    +  E  LI +     GP ++     +       +   KK+F    Y+ L  +  
Sbjct: 112  ISEADVVPFESELIFIAYSEQGPFEKGMLSKNLDEVANTMERLKKMFS-YFYIGLSHQES 170

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G+      Q+ Q+A   E+  VA     + +++D EA   L A+  ST +  K     +P
Sbjct: 171  GFFSNVNDQLRQMAVLREIECVALPKVYYENKDDEEAFRALQAIDKSTYLEDKTLVS-SP 229

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            +    +  +   ++++   +L +T  IA  C+  +      LP F          E   E
Sbjct: 230  NRNFISDDDFKVLYTEAELSLTDT--IAEMCNVSIMNLKTELPEF----------ETHQE 277

Query: 311  LRNKAVA------GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + NK         GL+ RL      K      YR+RL++EL +I  M F+ YFLIV D I
Sbjct: 278  VSNKVFLEQLSHFGLKRRLNNSVPEK------YRERLNYELKIINEMNFTDYFLIVYDVI 331

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++AKK  I VGPGRGS AGS+ AY L I +IDP+ + LLFERFLNP+R+SMPD DIDF  
Sbjct: 332  RYAKKAGIYVGPGRGSSAGSLVAYCLGIVEIDPIEYDLLFERFLNPERVSMPDIDIDFPD 391

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D+R  VI YV+NKYG + VA I+TFG+L+A+ A RD  R LQ+P  +VD++ KLI  DP 
Sbjct: 392  DKRQYVIDYVRNKYGDDYVAHIVTFGTLKARQAFRDTARVLQVPIRKVDQVSKLI--DPM 449

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +       +SRF+    ++  + +  E++ K+EG+ RH STHAAGIV+  +PL  +VP
Sbjct: 450  MGLR-DNYNKNSRFKSLIQSEDLLKKTFELACKIEGMPRHTSTHAAGIVLSKKPLDVVVP 508

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            + + + S+    Q+ M  +E  GL+K DFLGL+ LT++  ++          D+  IP D
Sbjct: 509  VIQ-LDSETKAVQYEMSHLESIGLVKIDFLGLRNLTIID-NISRQINESEAFDIMSIPLD 566

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY L++   T+G+FQLES GM+  L+ ++P    DI+  V+L+RPGP++NI +Y   
Sbjct: 567  DQKTYELISRAETVGVFQLESDGMKALLKKVKPHKFSDIVDTVALFRPGPMENIPLYLEN 626

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++  EK+  IH  +  + + T G++IYQEQ+MQ+AQ+++G+SL+ AD+LR+AMGKK  +E
Sbjct: 627  RDHPEKVKYIHDDLKRITESTNGILIYQEQIMQVAQIMAGFSLARADILRKAMGKKNAKE 686

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D  K  FI G    G  +T A  +F L+ KFA+YGFNKSH+ AY +I+YQ +++K +YP
Sbjct: 687  LDGLKTEFIQGCIDKGHKETFAEELFSLIYKFANYGFNKSHSVAYGLIAYQLSYLKANYP 746

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
              F    +T  + +  K +++  + R+  + + P ++      + +    I      IKG
Sbjct: 747  HLFYTYLLTSVIGSEVKTRQYIDECRRRKVDLRPVNLEQSRNSYTLEGYAIRLPFTVIKG 806

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +  +    I  E   + P+ +  +  SR++   + +   E L+ AGA D     R+ ++ 
Sbjct: 807  ISKSIGTKIQNEVHDNGPYLNYYNAISRLNLVGIKKNQFELLIQAGAFDYLNSDRLSMIA 866

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGF 961
            SL+   +YA  +   +          +     D I+   F+V  EN      +E  VLGF
Sbjct: 867  SLEEALRYANIIRVEKDG--------QSSLNMDLISEPIFTVVSENRRQVLNDELVVLGF 918

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATI----RGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            YFS HP          + +K   ES + I    R    R+ AMV   +  +T+KG ++ +
Sbjct: 919  YFSEHP---------TLRLKKKHESDSLIEVKVRDKYFRIIAMVDRIKLHRTKKGDQMAF 969

Query: 1018 VTFSEPAKEYEANFFP 1033
            +  S+     +   FP
Sbjct: 970  IQLSDDTGLIDGVVFP 985


>gi|303233203|ref|ZP_07319876.1| putative DNA polymerase III subunit alpha [Atopobium vaginae
            PB189-T1-4]
 gi|302480788|gb|EFL43875.1| putative DNA polymerase III subunit alpha [Atopobium vaginae
            PB189-T1-4]
          Length = 1302

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 337/1019 (33%), Positives = 519/1019 (50%), Gaps = 100/1019 (9%)

Query: 67   IQPIIGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR-----M 119
            I PI GC++++ + D+   + T Q +   P      LLV   +GY  L++LVS      M
Sbjct: 125  ITPIFGCEVNL-IPDSCIERGTTQTRYHLP------LLVKNNQGYHNLMKLVSEASNKMM 177

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            Y         R+ L  L+    EGLI L+G   G I R    ++   AE      + +FG
Sbjct: 178  YY------RPRVTLDMLRTY-HEGLICLSGCYQGVIARMVVQHAMDEAEGWARALQDIFG 230

Query: 180  DRLYVNLQRHR----GYDRYRESQVVQLAYTHELPL----VATNNSLFLSEEDYEAHDVL 231
            D  Y+ LQ H      +    E+ +    Y     L    VATN++ + S +D E  D+L
Sbjct: 231  DDFYLELQDHNISLDSWGGMTETDIAHTIYDMGKKLGIATVATNDNHYFSRDDVETRDLL 290

Query: 232  MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QV 287
              ++  T + +  +  +   ++Y+K + EM S+FS  P+A+E T  IA++C+F L    +
Sbjct: 291  SCISAGTHLDESYQTTLPGSEYYMKTQEEMSSLFSWAPDAIEQTYAIAQKCNFELDWTNM 350

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
            + P  P   E E        E+  R +  AGL  +  +       +  + ++R ++E  V
Sbjct: 351  YLPKFPGLREGE------SSEDRFRAECEAGLARKYGKDWEHTVINGVNVKERFEYEYGV 404

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I    F+ YFLIV ++++WAK++ I VGPGRGS AG++ AYA+ IT  DPL   L+FERF
Sbjct: 405  ICFKGFADYFLIVQEYVRWAKEHGIGVGPGRGSAAGAIVAYAMDITTFDPLENGLMFERF 464

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            L+P+R  MPD D+DF  +RR EV+++V+  YG ERV  +IT+ +++AK A+ D  R L  
Sbjct: 465  LSPERTEMPDIDMDFDDERRLEVVQHVRELYGSERVCHVITYSTIKAKQAINDAARVLNY 524

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSR-------FREARLADPSVDRLLEISQKLEG 520
            P S   +L K+I NDP   +S      D +       F +    +    R+++ ++ +EG
Sbjct: 525  PVSLGQKLSKMISNDPKVKLSYVLEKTDGKEDMYNPDFLKEYETNADERRIIDAARAIEG 584

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R    HA  ++I   P++  VP   D +  + +TQ+    +   GL+K DFLGL+TLT
Sbjct: 585  LTRGEGVHACAVLIAPTPVNDHVPTKLDTKGGVEITQYEGHSVADMGLLKMDFLGLRTLT 644

Query: 581  LLQKSLDFLAQR-----------------------GVKVDLSLIPFDDHETYHLLTTKGT 617
            ++ K+L+ +  R                        + +D + I F D   Y LL++  T
Sbjct: 645  VISKTLENIRTRYPDLSLIDTFSPTVKAALKEGATSIDIDPAKIDFSDPAIYKLLSSGHT 704

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIH 675
             G+FQ+ES GM   ++ M+P     I+AL++LYRPGP+   +V  Y NR NG+E +V   
Sbjct: 705  AGVFQVESEGMTATIKNMKPREFRQIVALIALYRPGPLGAGMVTSYINRMNGREPVVFYD 764

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV-LRRAMGKK---------IKEEM 725
              +  +L ET G I+YQEQVMQI+  +SG+S  E+D  +R+ + KK            E 
Sbjct: 765  DRLSEILDETYGTIVYQEQVMQISVKMSGFSKGESDSRIRKPVAKKKIALLTSTIFHWEN 824

Query: 726  DKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             K +   + ++ GA  NG  + +A  I++ + +FA Y FNKSH+A YA++  QTAW+K H
Sbjct: 825  GKDETTYDHWMGGAKANGYKEDVAQKIWDDVLEFASYAFNKSHSAGYAILVMQTAWLKAH 884

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            +P E++A+ +T  M   +KI  +        I I+PP +N    DF      + +  A I
Sbjct: 885  FPREYMASVLTSYMGKTDKITHYISACHHEGIDILPPDINESRRDFTATAQGVRFGFAGI 944

Query: 843  KGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +GVG      IM+  AD  PF  L DF +R DS   NRRV+E+L+ AGA D  GY R QL
Sbjct: 945  RGVGEQVGEAIMQERADHGPFLHLHDFVNRSDSACANRRVVEALIKAGAFDASGYPRCQL 1004

Query: 902  LQSLD-----NIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKI-TLEKFSVENSSVR 951
            +  +D     NI   A   +K+R+    ++F      E   F   I  ++     +    
Sbjct: 1005 MGFVDKNNPKNILDSAAKQQKSRSMGQLSLFDLYGNVEGSGFEQHIPPIDPNDSWDQGFM 1064

Query: 952  FENEQRVLGFYFSGHPLDVYKPIL---RKMGIKGYEES--VATIRGNNIRLAAMVVSKQ 1005
               E+ VLG Y S HPL  Y   +   R + I   EE+  V    G+ +RL   V   Q
Sbjct: 1065 LAQEREVLGIYVSDHPLRPYHVAVERSRDVSISQLEETREVHDEDGSLLRLEYTVADHQ 1123



 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          FVHL  HS +S+L+ A S+  ++        PA+A+TD   +F   +F
Sbjct: 3  FVHLHNHSQFSILDAATSIQRMVKAAVERHMPALALTDHEYMFGVPDF 50


>gi|323440753|gb|EGA98462.1| DNA polymerase III alpha subunit [Staphylococcus aureus O11]
          Length = 1065

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 336/1040 (32%), Positives = 534/1040 (51%), Gaps = 115/1040 (11%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4    YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                        MT        T+ ++VL      G + L +L S+            I 
Sbjct: 64   ------------MTIYVTNGLNTIETVVL-AKDNNGLKDLYQLSSK------------IK 98

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            ++ ++ +  E L                    Q +   ++ FK +           HRG 
Sbjct: 99   MNSIENVSFELL-------------------QQFSSNLIIIFKNV--------ADEHRG- 130

Query: 193  DRYRESQVVQLAYTHE-------------LPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
                   +VQ+  +HE             +  V      + + +D +    L A+  +T 
Sbjct: 131  -------IVQVFDSHEDTYLDHRSVLVQGIKHVWIQTVCYQTPQDADTISALAAIRDNTK 183

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +           H+L  +   +       E L     IA++C+  L+ H  +LP++ +  
Sbjct: 184  LDLIHDQEDFGAHFLTEKE--IKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQY-QTP 240

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             D+  K+    +    +  LE+           +   Y +RL +E  VI  M F  YFLI
Sbjct: 241  NDESAKKYLWRVLVTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLI 289

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V+D I +AK N++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD D
Sbjct: 290  VSDLIHYAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDID 349

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDF   RR+ VI+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  +I
Sbjct: 350  IDFEDTRRERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSVI 409

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P+     ++L        F++    +   +R   I +KLEGL RH STHAAGI+I D PL
Sbjct: 410  PHKLG--ITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPL 467

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
             +  P+ +     L  TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+
Sbjct: 468  YEYAPLTKGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDI 525

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IPFDD + + LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I
Sbjct: 526  EKIPFDDQKVFDLLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEI 585

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R++   K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM 
Sbjct: 586  PTYITRRHDPSKVQYLHPYLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMS 645

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK +  ++ +++ FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  ++
Sbjct: 646  KKNRAVLESERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSF 705

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K HYP  F A  ++  + + +K  +  ++A++  I I+PP++N     +K     IY S
Sbjct: 706  LKVHYPNYFYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSKEGIYLS 765

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            +  IKGVG  + + I+ E   +  F    DF  R+  +   R++LE+L+  GA D FG +
Sbjct: 766  IGTIKGVGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKT 825

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFE 953
            R  LLQ++D        V     N  ++ F  +    K  + DK  L    +       +
Sbjct: 826  RSTLLQAIDQ-------VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------Q 872

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  LGFY S HP+D  K  + K  +  ++ S A    NN  +       +Q +T+ G 
Sbjct: 873  YEKEYLGFYVSQHPVD--KMFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGQ 927

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             + +VT ++  +  +   FP
Sbjct: 928  NMAFVTLNDGIETLDGVIFP 947


>gi|258424118|ref|ZP_05687000.1| DNA polymerase subunit III [Staphylococcus aureus A9635]
 gi|257845739|gb|EEV69771.1| DNA polymerase subunit III [Staphylococcus aureus A9635]
          Length = 1065

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 335/1029 (32%), Positives = 530/1029 (51%), Gaps = 93/1029 (9%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4    YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS--RMYLLDQGKQSVR 130
                        MT        TV ++VL      G + L +L S  +M  L+       
Sbjct: 64   ------------MTIYVTNGLNTVETVVL-AKDNNGLKDLYQLSSEIKMNALEH------ 104

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    L+      +I+    +    D    F+S +                         
Sbjct: 105  VSFELLKRFSNNMIIIFKNVADEHRDIVQVFDSHE------------------------- 139

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D Y + + V       +  V   N  + + +D +    L A+  +T +          
Sbjct: 140  --DTYLDHRSV---LVQGIKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFG 194

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             H+L  +   +       E L     IA++C+  L  H  +LP++ +   D+  K+    
Sbjct: 195  AHFLTEKE--IKQLDINQEYLTQVDVIAQKCNAELNYHQSLLPQY-QTPNDESAKKYLWR 251

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            +    +  LE+           +   Y +RL +E  VI  M F  YFLIV+D I +AK N
Sbjct: 252  VLVTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTN 300

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++V
Sbjct: 301  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKV 360

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L 
Sbjct: 361  IQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLD 418

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +   
Sbjct: 419  EAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDT 478

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
              L  TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPF+D + +
Sbjct: 479  GLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFEDQKVF 536

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   
Sbjct: 537  ELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPS 596

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ ++
Sbjct: 597  KVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESER 656

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A
Sbjct: 657  QHFIEGAKQNGYHEGISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYA 716

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  +
Sbjct: 717  NILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQS 776

Query: 850  ARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I+ E   +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D  
Sbjct: 777  VKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ- 835

Query: 909  QKYAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
                  V     N  ++ F  +    K  + DK  L    +       + E+  LGFY S
Sbjct: 836  ------VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVS 883

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+D  K  + K  +  ++ S A    NN  +       +Q +T+ G  + +VT ++  
Sbjct: 884  QHPVD--KMFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLNDGI 938

Query: 1025 KEYEANFFP 1033
            +  +   FP
Sbjct: 939  ETLDGVIFP 947


>gi|323442993|gb|EGB00615.1| DNA polymerase III alpha subunit [Staphylococcus aureus O46]
          Length = 1065

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 337/1040 (32%), Positives = 533/1040 (51%), Gaps = 115/1040 (11%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L +H++Y LL  +L + + +    ++   A+AITDTN L+    F     A  I+PI G
Sbjct: 4    YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPRFYDACIANNIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                        MT        T+ ++VL      G + L +L S+            I 
Sbjct: 64   ------------MTIYVTNGLNTIETVVL-AKDNNGLKDLYQLSSK------------IK 98

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            ++ ++ +  E L                    Q +   ++ FK +           HRG 
Sbjct: 99   MNSIENVSFELL-------------------QQFSSNLIIIFKNV--------ADEHRG- 130

Query: 193  DRYRESQVVQLAYTHE-------------LPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
                   +VQ+  +HE             +  V      + + +D +    L A+  +T 
Sbjct: 131  -------IVQVFDSHEDTYLDHRSVLVQGIKHVWIQTVCYQTPQDADTISALAAIRDNTK 183

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +           H+L  +   +       E L     IA++C+  L+ H  +LP++ +  
Sbjct: 184  LDLIHDQEDFGAHFLTEKE--IKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQY-QTP 240

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             D+  K+    +    +  LE+           +   Y +RL +E  VI  M F  YFLI
Sbjct: 241  NDESAKKYLWRVLVTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLI 289

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V+D I +AK N++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD D
Sbjct: 290  VSDLIHYAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDID 349

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDF   RR+ VI+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LI
Sbjct: 350  IDFEDTRRERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLI 409

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P+     ++L        F++    +   +R   I +KLEGL RH STHAAGI+I D PL
Sbjct: 410  PHKLG--ITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPL 467

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
             +  P+ +     L  TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+
Sbjct: 468  YEYAPLTKGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDI 525

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IPFDD + + LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I
Sbjct: 526  EKIPFDDQKVFDLLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEI 585

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R++   K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM 
Sbjct: 586  PTYITRRHDPSKVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMS 645

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK +  ++ +++ FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  ++
Sbjct: 646  KKNRAVLESERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSF 705

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K HYP  F A  ++  + + +K  +  ++A++  I I+PP++N     +K     IY S
Sbjct: 706  LKVHYPNYFYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSKEGIYLS 765

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            +  IKGVG  + + I+ E   +  F    DF  R+  +   R++LE+L+  GA D FG +
Sbjct: 766  IGTIKGVGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKT 825

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFE 953
            R  LLQ++D        V     N  ++ F  +    K  + DK  L    +       +
Sbjct: 826  RSTLLQAIDQ-------VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------Q 872

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  LGFY S HP+D  K  + K  +  ++ S A    NN  +       +Q +T+ G 
Sbjct: 873  YEKEYLGFYVSQHPVD--KMFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGQ 927

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             + +VT ++  +  +   FP
Sbjct: 928  NMAFVTLNDGIETLDGVIFP 947


>gi|329667461|gb|AEB93409.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii DPC 6026]
          Length = 1038

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 338/1040 (32%), Positives = 538/1040 (51%), Gaps = 69/1040 (6%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQ  S ++LLE    + N+ +        AIA+TD N  +  ++F + A   GI+P++
Sbjct: 4    VSLQNLSGFTLLESPTKVKNLAENAKKKGYSAIALTDINITYGLVDFYKAAKDTGIKPLL 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG--KQSV 129
            G QL I+          G         ++++    +GY+ ++ L S + LL +   K+++
Sbjct: 64   GMQLRIN----------GLIDEANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQ 187
                +  + +G   LI++T  +     +    N+ ++    L   +        +Y+ + 
Sbjct: 114  LTFENLKKYLGH--LILITPSNLHSELKMLQTNNPKMGANYLRKLQDSLPSSSSMYLGVY 171

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
               G   Y  + +  LA    LPL A  +  +L+  +      L A+  +T +   ++  
Sbjct: 172  ADSGQQEYI-NYIRSLATQFSLPLTAVEDGQYLNRNEQFLRRTLQAIKTNTHLENIEQLA 230

Query: 247  RVTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            +    HYLKN  E+   +   D+ +AL+N  EI + C+  ++   P LP+F +       
Sbjct: 231  KQAGSHYLKNSEELQVSYRKFDIEDALKNAEEIGKICTAEIKFQDPQLPKFKQ------- 283

Query: 305  KEEENELRNKAVAGLEV--RLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
                    NK     E    LAQ  +AK ++ Q    Y++RLD+EL VI  M F  YFLI
Sbjct: 284  --------NKFPTSKEYLHALAQEGLAKRFNNQIPAQYQKRLDYELQVINEMGFDDYFLI 335

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D + +A   +I  GPGRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D
Sbjct: 336  VWDVMNFAHSVHITTGPGRGSAAGSLVSYALRITEVDPIEYNLLFERFLNPARQQMPDID 395

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +D   +RRDEVI+Y+  KYG    AQI+TFG+L AK  L+DV R   +   +  R    I
Sbjct: 396  LDIPDNRRDEVIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAI 455

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P+        +A       +     +     L   ++ LE L RH S HAAG+VI D  L
Sbjct: 456  PHSKGKITLAEAYQKSKELQLLVNTNELSKILFATAEHLENLPRHYSIHAAGLVITDDSL 515

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +++V +       +PVTQ     +E  GL+K DFLGL+ LT+L   +  L   G+ +D +
Sbjct: 516  AEIVGLQAGPLG-IPVTQQTKLNVESLGLLKIDFLGLRNLTILGNIVAALRADGIDIDPN 574

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD ET  L     T  +FQ ES G+++ LE + PD  EDI+A+ +LYRPGPI+NI 
Sbjct: 575  RIPLDDQETLTLFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPINNID 634

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             + NRK+GKE++    P +  +L  T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM K
Sbjct: 635  HFINRKHGKERVQYPDPSLKKILGTTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSK 694

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  + + +++ +FI GA K G  K  A  +++ +A+FA+YGFN+SHA AY+ I++  A+ 
Sbjct: 695  KNADVIQRERAKFIEGAIKLGRKKETAEKVYDYIAQFANYGFNRSHAVAYSKIAFWLAYF 754

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYP  F  A +   M N  KI ++   A++  I+I+PP++     DF + + +I   L
Sbjct: 755  KVHYPGAFYLALLNSNMGNRNKIAQYLMQAQEAGIKILPPNIENSKADFSLENGKILVGL 814

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             AI+G+ +   + I+E    +P  S+ DF  ++D+  L+   +E+L+ AG  D    +R 
Sbjct: 815  KAIRGLRSDLLKQILEIK--RPIKSMTDFLWKIDNNLLSADAVENLIKAGTFDRLAPNRN 872

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF--SVENSSVRFENEQR 957
            +LL+   ++ +  +    N +     +F     T   K+  EK   + E S++  E    
Sbjct: 873  ELLKINKDLVESVKMAGSNLS-----LFE----TLEPKVEEEKMPTAAEKSAMEVE---- 919

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK----KTRKGS 1013
             +GF    +P+   +   RK   K  +   +  +G       + V K  K     T+KG 
Sbjct: 920  AMGFSTGINPIIAVQKYARKFNAKRLQVFESNEQG-------IAVGKLMKVKPITTKKGD 972

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             + +  FS+ + E +   FP
Sbjct: 973  NMAFAVFSDTSGEKDFTIFP 992


>gi|327542106|gb|EGF28600.1| DNA polymerase III, alpha subunit [Rhodopirellula baltica WH47]
          Length = 1045

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 302/818 (36%), Positives = 466/818 (56%), Gaps = 31/818 (3%)

Query: 174 FKKLFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
           F K+FGDR ++ +  +     R +    V +A    LPLVAT++  ++++ED EA D+++
Sbjct: 35  FHKVFGDRYFIEIMNNDVDIQRTQLEGAVDIANKMGLPLVATSDCHYVNQEDAEAQDIML 94

Query: 233 AVAHSTVVSQKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
            +      +   R ++  D + L++  +M   F  L +A+  + EIA      L+ +   
Sbjct: 95  CINTGRFRTDNTRMKMENDQFFLRSPQQMYEKFPGLEDAVGRSQEIADTVDIQLEFNKYF 154

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIA 349
            P F    C D +    + LR     GL  R       I  G  + +   RLD EL+VI 
Sbjct: 155 FPSF---PCPD-ELTPLDYLRKLCEQGLMERYEGDDERIIDGKLSDEVMARLDRELDVIE 210

Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
           ++ +  YFLIV DF+  A+   I     RGSG G++  YAL ++ + PLR+ LLFERFL+
Sbjct: 211 KLGYPTYFLIVWDFVNHARDIGIS-ATARGSGVGAIVCYALYMSHVCPLRYDLLFERFLD 269

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
             R   PD DIDF ++RR EVI YV+ +YG E V QI TFG+L AKAA++D GRAL +P 
Sbjct: 270 ESRTEPPDIDIDFEKERRIEVIDYVKERYGSEMVCQIGTFGTLAAKAAIKDTGRALGIPL 329

Query: 470 SQVDRLCKLIPNDPAHPV--SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
           S+V+++ +L+P++    +  SL+  AD    +     DP +  LL+++ K+EGL R+  T
Sbjct: 330 SRVNQITELVPDELKITIAKSLEKSAD---LKMIYDGDPEIRELLDLAMKIEGLARNVGT 386

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           HAA +VI D+PL++ VP+ R       +TQ+ M  +E +GL+K DFLGL+ LT+L +++ 
Sbjct: 387 HAAAVVIADKPLTEYVPLGRVPGKQDVITQWAMVDVEASGLLKMDFLGLRNLTILSRTVK 446

Query: 588 FLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            + Q  G  +D    P DD  +Y LL    T G+FQLES G+R  L+ M+PD   DIIA 
Sbjct: 447 LVEQTTGTTIDPLKFPLDDKPSYALLQRGETKGVFQLESGGIRDLLQRMKPDTFNDIIAT 506

Query: 647 VSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            +LYRPGP++  +V  Y N K+G+++    HP++  +L+ET  +++YQEQVM+I   L  
Sbjct: 507 AALYRPGPLEGGMVDDYVNIKHGRQQPEYKHPVLKEILEETNSIMVYQEQVMRILNRLGD 566

Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
             L++A    +A+ KK +  +D   + FI+G+ KNG+++  A +I+ L+ KFA YGFNKS
Sbjct: 567 VPLAKAYTCIKAISKKKQALIDANHDVFIAGSIKNGLAEKDAEDIWNLIVKFAGYGFNKS 626

Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN-----VEKIKKFCQDARQFNIQIMPP 819
           H+ AYA+++YQTA++K HYPVEF+AA ++ ++        + + +  +D  + +I+++PP
Sbjct: 627 HSTAYALVAYQTAYLKAHYPVEFMAALLSSDISGRNFKRKDALVEHMEDCDRMDIEVLPP 686

Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLN 878
           +VN    DF V D +I ++L+AIK  G +TA  I E    + PF  + DFC RVD    N
Sbjct: 687 NVNQSDADFGVLDGKIPFALSAIKACGGSTAISIEEERKKNGPFKDIFDFCERVDPHDCN 746

Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN--------IFAHE 930
           R  +E+L+ AGA DCFG  R QL   L+   +    V+ ++     +          A  
Sbjct: 747 RSSIETLIKAGAFDCFGAKRSQLASVLERAMQAGAKVQADKKTGQASFFDAFDEEDDADS 806

Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
            G  S  + L          +   E+ VLGFY   HPL
Sbjct: 807 NGESSAAVPLPDIEEWPDREKLLAEKEVLGFYLDSHPL 844


>gi|227510300|ref|ZP_03940349.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis
            ATCC 27305]
 gi|227189952|gb|EEI70019.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis
            ATCC 27305]
          Length = 1093

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 351/1014 (34%), Positives = 538/1014 (53%), Gaps = 80/1014 (7%)

Query: 43   AIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            A+A+TD N ++ A+EF      AGIQPIIG  L      NL      +  +    SI+LL
Sbjct: 12   ALAMTDINVMYGAVEFYDTCIDAGIQPIIGLTL------NLPGVMLSENNY----SILLL 61

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRI------------CLSWLQEIGTEGLIMLTGG 150
                 GYQ L+++ +   L + G+  V I             L  L EI      +L  G
Sbjct: 62   AKNQTGYQNLLKIST---LKNSGETDVTIDQLNGRLDGLYVILPPLAEIND----LLLQG 114

Query: 151  SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVV----QLAYT 206
             S  I             K+ L F                G D +    ++    ++A  
Sbjct: 115  KSADISDLISKLMDLGLTKQDLKF----------------GVDYHSSDALIDMLSKVAAD 158

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ--KDRPRVTPDHYLKNRSEMVSIF 264
            +++ L+A     +L+ EDY    VL A+A  T +S   +   +V P ++L+ +  M   +
Sbjct: 159  NQVQLIADAPVQYLNAEDYFPMQVLKAIAAGTKISNVAELSQQVGP-YFLRPQDRMEKEY 217

Query: 265  S--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
                L  AL+   E+   C   ++   P LP+F  +  +D+  E    LR     GL  R
Sbjct: 218  QRLHLNAALQAIDEVVSNCHVEIKKKQPKLPQF--ETPNDM--EPGQYLRQLCEKGLSKR 273

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
            L    I+       YR RLD EL+VI  M F  YFLIV D I +A +  I  GPGRGS A
Sbjct: 274  LEAAHISDD---APYRHRLDRELSVIHSMGFDDYFLIVWDVINFAHQARIITGPGRGSAA 330

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GS+ AY L ITD+DP+++ LLFERFLNP+R+ MPD D+D   D+RD+VI+YV  KYGH+R
Sbjct: 331  GSLVAYTLFITDVDPIKYELLFERFLNPERVQMPDIDLDIPDDKRDDVIQYVHQKYGHQR 390

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            VAQIITFG+L AK A RDVGR   +  +Q D   K IP+  A  V+L     +S+  +  
Sbjct: 391  VAQIITFGTLAAKQATRDVGRVFGLNPNQQDVWSKAIPS--AFHVTLADAYHNSQQLKNL 448

Query: 503  LADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
            +AD  +++ L + +Q LEGL RH STHAAG+V+ D  L  LVP+ +D    L +TQ++  
Sbjct: 449  VADSDLNKSLFKTAQVLEGLPRHYSTHAAGLVLSDNLLVDLVPL-QDGNDGLLMTQYSKD 507

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
            ++E  GL+K DFLGL+ LT+L  +L  + Q  G K+++S IP DD +T  L     T G+
Sbjct: 508  YVESVGLLKIDFLGLRNLTILADALAEIKQATGQKINISQIPLDDKKTLKLFANGDTTGV 567

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ ESSG+R  L  + P+  ED+  + +LYRPGP++NI     RK+ +E +      ++ 
Sbjct: 568  FQFESSGIRSVLRRLHPEQFEDVALVNALYRPGPMENIDEVVKRKSHQEALTYPDQSLED 627

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +LK T GVI+YQEQVM +A  ++G+SL +AD+LRRAM KK  + MD+ K  F++GA K G
Sbjct: 628  ILKSTYGVIVYQEQVMLVASKMAGFSLGQADILRRAMSKKKLKVMDRMKSLFLTGAEKKG 687

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
              K +A  +F+ + KFA+YGFNKSHA AY+ ++Y+ A++K ++P EF  A +    ++  
Sbjct: 688  HPKQVAEKVFDYIEKFANYGFNKSHAVAYSKMAYELAYLKVYFPGEFHVALLNSVQNSSV 747

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASAD 859
            K+K++  DA+   ++++ P +N    DF   D +I + LA+IKGV     + I+ +   +
Sbjct: 748  KMKEYLSDAKSMGVKVVAPDINKSRADFSYQDQQIVFGLASIKGVRHDMVQDILNDRDQN 807

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
              + S  +  +R+  K     ++ +L+++GALD F Y+R +L+ +        Q      
Sbjct: 808  GRYKSFPNLLARLSDKYRKPDLINALIYSGALDGFSYNRSELISAAPEFISSIQL----- 862

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            +    ++F   + T   K  +          R E E   LG Y SGHP++ +  + +++ 
Sbjct: 863  SGDSMSLFKALEPTVPRKPEMPLMQ------RLEKENDYLGAYLSGHPVERFTALRKRLN 916

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K   + V  +  N + L   +   +  +T+ G ++ +   S+   E     FP
Sbjct: 917  AKLTNQLVVGM--NQVVLILYITKVKIIRTKTGKQMAFFDGSDEVGEMSVTVFP 968


>gi|227513307|ref|ZP_03943356.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
 gi|227083508|gb|EEI18820.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
          Length = 1093

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 349/1006 (34%), Positives = 545/1006 (54%), Gaps = 64/1006 (6%)

Query: 43   AIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            A+A+TD N ++ A+EF      AGIQPIIG  L      NL      +  +    SI+LL
Sbjct: 12   ALAMTDINVMYGAVEFYDTCIDAGIQPIIGLTL------NLPGVMLSENNY----SILLL 61

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFF 161
                 GYQ L+++ +   L   G+ +V I     Q  G  +GL ++    +   D     
Sbjct: 62   AKNQTGYQNLLKIST---LKSSGETNVMID----QLNGRLDGLYVILPPFAEINDLLLQG 114

Query: 162  NSSQVAEKRLLTFKKLFGDRLYVNLQRHR---GYDRYRESQVV----QLAYTHELPLVAT 214
             S+ ++E        L    + + L +     G D +    ++    ++A  +++ L+A 
Sbjct: 115  KSADISE--------LISKLMDLGLTKQDIKFGVDYHSSDTLIDMLSKVAADNQVQLIAD 166

Query: 215  NNSLFLSEEDYEAHDVLMAVAHSTVVSQ--KDRPRVTPDHYLKNRSEMVSIFS--DLPEA 270
                +L+ EDY    VL A+A  T +S   +   +V P ++L+ + +M   +    L  A
Sbjct: 167  APVQYLNAEDYFPMQVLKAIAAGTKISNVAELSQQVGP-YFLRPQDQMEKEYQRLHLNAA 225

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
            L+   E+   C   ++   P LP+F  +  +D+  E    LR     GL  RL    I+ 
Sbjct: 226  LQAIDEVVSNCHVEIKKKQPKLPQF--ETPNDM--EPGQYLRQLCERGLSKRLEAAHISD 281

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                  YR RLD EL+VI  M F  YFLIV D I +A +  I  GPGRGS AGS+ AY L
Sbjct: 282  D---APYRHRLDRELSVIHSMGFDDYFLIVWDVINFAHQARIITGPGRGSAAGSLVAYTL 338

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             ITD+DP+++ LLFERFLNP+R+ MPD D+D   D+RD+VI+YV  KYGH+RVAQIITFG
Sbjct: 339  FITDVDPIKYELLFERFLNPERVQMPDIDLDIPDDKRDDVIQYVHQKYGHQRVAQIITFG 398

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            +L AK A RDVGR   +  +Q D   K IP+  A  V+L     +S+  +  +AD ++++
Sbjct: 399  TLAAKQATRDVGRVFGLNPNQQDVWSKAIPS--AFHVTLADAYHNSQQLKNLVADSNLNK 456

Query: 511  -LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
             L + +Q LEGL RH STHAAG+V+ D  L  LVP+ +D    L +TQ++  ++E  GL+
Sbjct: 457  SLFKTAQVLEGLPRHYSTHAAGLVLSDNLLVDLVPL-QDGNDGLLMTQYSKDYVESVGLL 515

Query: 570  KFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGL+ LT+L  +L  + Q  G K+++S IP DD +T  L     T G+FQ ESSG+
Sbjct: 516  KIDFLGLRNLTILADALAEIKQATGQKINISQIPLDDKKTLKLFANGDTTGVFQFESSGI 575

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            R  L  + P+  ED+  + +LYRPGP++NI     RK+ +E +      +  +LK T GV
Sbjct: 576  RSVLRRLHPEQFEDVALVNALYRPGPMENIDEVVKRKSHQEALTYPDQSLKDILKSTYGV 635

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQVM +A  ++G+SL +AD+LRRAM KK  + MD+ K  F++GA K G  K +A  
Sbjct: 636  IVYQEQVMLVASKMAGFSLGQADILRRAMSKKKLKVMDRMKSLFLTGAEKRGHPKQVAEK 695

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            +F+ + KFA+YGFNKSHA AY+ ++Y+ A++K ++P EF  A +    ++  K+K++  D
Sbjct: 696  VFDYIEKFANYGFNKSHAVAYSKMAYELAYLKVYFPGEFHVALLNSVQNSSVKMKEYLSD 755

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLED 867
            A+   ++++ P +N    DF   D +I + LA+IKGV     + I+ +   +  + S  +
Sbjct: 756  AKSMGVKVVAPDINKSRADFSYQDQQIVFGLASIKGVRHDMVQDILNDRDQNGRYKSFPN 815

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
              +R+  K     ++ +L+++GALD F Y+R +L+ +        Q      +    ++F
Sbjct: 816  LLARLSDKYRKPDLINALIYSGALDGFSYNRSELISAAPEFISSIQL-----SGDSMSLF 870

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               + T   K  +          R E E   LG Y SGHP++ +  + +++  K   + V
Sbjct: 871  KALEPTVPRKPEMPLMQ------RLEKENDYLGAYLSGHPVERFTALRKRLDAKLTNQLV 924

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +  N + L   +   +  +T+ G ++ +   S+   E     FP
Sbjct: 925  VGM--NQVVLILYITKVKIIRTKTGKQMAFFDGSDEVGEMSVTVFP 968


>gi|25028585|ref|NP_738639.1| DNA polymerase III subunit alpha [Corynebacterium efficiens YS-314]
 gi|23493870|dbj|BAC18839.1| putative DNA polymerase III alpha subunit [Corynebacterium efficiens
            YS-314]
          Length = 1204

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 342/1023 (33%), Positives = 551/1023 (53%), Gaps = 71/1023 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  SFVHL  H+ YS+L+G   ++ + D++   Q PA+ ITD  N++ +  F +K   
Sbjct: 17   MAKQSSFVHLHNHTEYSMLDGMAKIDMLADEVNRQQMPAVGITDHGNMYGSNAFYRKMTE 76

Query: 65   AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113
            AG++PIIG +  L  + + N +    G+ P      +          +L   A G + L 
Sbjct: 77   AGVKPIIGIEAYLAPESRFNKERVRWGE-PHQKSDDVSASGAYLHQTMLAENATGLRNLF 135

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L S      Q  +  R+    + E   EG+I  TG  SG +           A +    
Sbjct: 136  YLSSMASYEGQLGKWPRMDAEIIAER-AEGIIATTGCPSGDVQTRLRLGQFNEALEAAAM 194

Query: 174  FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            ++ ++G D  ++ L  H G D   R R S+++++     LP + TN+  ++ E   +AH+
Sbjct: 195  WQDIYGRDNYFLELMDH-GLDIENRVR-SELLEIGRKLNLPPLVTNDCHYVLESQAQAHE 252

Query: 230  VLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQV 287
             ++ V     +  +DR +     +Y+K   +M S++ D +P+  +NT+ IA R    +Q 
Sbjct: 253  AMLCVQTGKTLHDEDRFKFDGSGYYIKTAEQMRSLWDDTVPDGCDNTLWIAER----VQD 308

Query: 288  HAPILPRFIEKECDDIQKEEENE-------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            +  I   + E   D +   +  E       L ++ +AGLE R     +      Q+Y +R
Sbjct: 309  YGEI---WEEHPHDRMPVADVPEGHTPTSWLHHEVMAGLEDRFPGQQVP-----QEYIER 360

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
             ++E++VI    +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+  
Sbjct: 361  AEYEISVIDMKGYPSYFLIVAEIIKHARSIGIWVGPGRGSAAGALVAYALTITNIDPIEH 420

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNP+R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K A++D
Sbjct: 421  GLLFERFLNPERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQAIKD 480

Query: 461  VGRAL--QMPYSQVDRLCKLIPND-PAHPVSLQAIAD--DSRFREAR------LADPSVD 509
              R    Q  Y   DR+ K++P    A  + L  I D    R+ EA         DP V 
Sbjct: 481  SARVQFGQPGYQIADRITKVLPPPIMAKDIPLSGITDPEHERYNEAGEVRALIETDPDVR 540

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            ++ + ++ LEG+ R A  HA  +++  +PL + +PM++       +T ++    E  GL+
Sbjct: 541  KIYDTARGLEGVVRQAGVHACAVIMSSQPLLECIPMWKRPADGAYITGWDYPACEAIGLL 600

Query: 570  KFDFLGLKTLTLLQKSLDFL-AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            K DFLGL+ LT++  +++ + A R G  VDL  +  +D ETY LL+   TLGIFQL+  G
Sbjct: 601  KMDFLGLRNLTVIGDAIENIKANRDGKVVDLENLSIEDEETYKLLSRGETLGIFQLDGGG 660

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM--- 681
            M++ L+ MQP    DI+A ++LYRPGP  ++    Y +RKNG++ I  IHP L +P+   
Sbjct: 661  MQELLKRMQPTGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEPLAEI 720

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L ET G+I+YQEQ+M+I+Q ++ Y+  +AD  R+AMGKK  E + K+   F +G   NG 
Sbjct: 721  LGETYGLIVYQEQIMKISQKVANYTAGQADGFRKAMGKKKPEVLAKEFAAFEAGMKANGF 780

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            S      +++ +  FA Y FNKSHAA Y ++S+ TA++K HY  E++AA +T   DN +K
Sbjct: 781  SADAIKTLWDTILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDK 840

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
               +  D R   I+++ P +N   ++F      I Y L AI+ VG+     I+E    K 
Sbjct: 841  TAIYLADCRHLGIRVLSPDINESALNFMPVGTDIRYGLGAIRNVGSEVVDSIIETRQSKG 900

Query: 862  -FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVE 916
             F    D+  ++D+   N+R+ ESL+ AGA D  G++R  L+     ++D++    +  +
Sbjct: 901  MFRDFSDYLDKIDTLPCNKRITESLIKAGAFDSLGHTRKGLMLVYEDAVDSVIATKKAAD 960

Query: 917  KNRTNKHENIFAHEK----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
            K + +   +  A  +    G F   +  +K+  ++       E+ +LG Y SGHPLD Y+
Sbjct: 961  KGQFDLFASFGAEAEDEVGGFFQIAVPDDKWDRKH---ELALEREMLGLYVSGHPLDGYE 1017

Query: 973  PIL 975
              L
Sbjct: 1018 DAL 1020


>gi|259507641|ref|ZP_05750541.1| DNA polymerase III, alpha subunit [Corynebacterium efficiens YS-314]
 gi|259164820|gb|EEW49374.1| DNA polymerase III, alpha subunit [Corynebacterium efficiens YS-314]
          Length = 1188

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 342/1023 (33%), Positives = 551/1023 (53%), Gaps = 71/1023 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  SFVHL  H+ YS+L+G   ++ + D++   Q PA+ ITD  N++ +  F +K   
Sbjct: 1    MAKQSSFVHLHNHTEYSMLDGMAKIDMLADEVNRQQMPAVGITDHGNMYGSNAFYRKMTE 60

Query: 65   AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113
            AG++PIIG +  L  + + N +    G+ P      +          +L   A G + L 
Sbjct: 61   AGVKPIIGIEAYLAPESRFNKERVRWGE-PHQKSDDVSASGAYLHQTMLAENATGLRNLF 119

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L S      Q  +  R+    + E   EG+I  TG  SG +           A +    
Sbjct: 120  YLSSMASYEGQLGKWPRMDAEIIAER-AEGIIATTGCPSGDVQTRLRLGQFNEALEAAAM 178

Query: 174  FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            ++ ++G D  ++ L  H G D   R R S+++++     LP + TN+  ++ E   +AH+
Sbjct: 179  WQDIYGRDNYFLELMDH-GLDIENRVR-SELLEIGRKLNLPPLVTNDCHYVLESQAQAHE 236

Query: 230  VLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQV 287
             ++ V     +  +DR +     +Y+K   +M S++ D +P+  +NT+ IA R    +Q 
Sbjct: 237  AMLCVQTGKTLHDEDRFKFDGSGYYIKTAEQMRSLWDDTVPDGCDNTLWIAER----VQD 292

Query: 288  HAPILPRFIEKECDDIQKEEENE-------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            +  I   + E   D +   +  E       L ++ +AGLE R     +      Q+Y +R
Sbjct: 293  YGEI---WEEHPHDRMPVADVPEGHTPTSWLHHEVMAGLEDRFPGQQVP-----QEYIER 344

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
             ++E++VI    +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+  
Sbjct: 345  AEYEISVIDMKGYPSYFLIVAEIIKHARSIGIWVGPGRGSAAGALVAYALTITNIDPIEH 404

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNP+R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K A++D
Sbjct: 405  GLLFERFLNPERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQAIKD 464

Query: 461  VGRAL--QMPYSQVDRLCKLIPND-PAHPVSLQAIAD--DSRFREAR------LADPSVD 509
              R    Q  Y   DR+ K++P    A  + L  I D    R+ EA         DP V 
Sbjct: 465  SARVQFGQPGYQIADRITKVLPPPIMAKDIPLSGITDPEHERYNEAGEVRALIETDPDVR 524

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            ++ + ++ LEG+ R A  HA  +++  +PL + +PM++       +T ++    E  GL+
Sbjct: 525  KIYDTARGLEGVVRQAGVHACAVIMSSQPLLECIPMWKRPADGAYITGWDYPACEAIGLL 584

Query: 570  KFDFLGLKTLTLLQKSLDFL-AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            K DFLGL+ LT++  +++ + A R G  VDL  +  +D ETY LL+   TLGIFQL+  G
Sbjct: 585  KMDFLGLRNLTVIGDAIENIKANRDGKVVDLENLSIEDEETYKLLSRGETLGIFQLDGGG 644

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM--- 681
            M++ L+ MQP    DI+A ++LYRPGP  ++    Y +RKNG++ I  IHP L +P+   
Sbjct: 645  MQELLKRMQPTGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEPLAEI 704

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L ET G+I+YQEQ+M+I+Q ++ Y+  +AD  R+AMGKK  E + K+   F +G   NG 
Sbjct: 705  LGETYGLIVYQEQIMKISQKVANYTAGQADGFRKAMGKKKPEVLAKEFAAFEAGMKANGF 764

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            S      +++ +  FA Y FNKSHAA Y ++S+ TA++K HY  E++AA +T   DN +K
Sbjct: 765  SADAIKTLWDTILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDK 824

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
               +  D R   I+++ P +N   ++F      I Y L AI+ VG+     I+E    K 
Sbjct: 825  TAIYLADCRHLGIRVLSPDINESALNFMPVGTDIRYGLGAIRNVGSEVVDSIIETRQSKG 884

Query: 862  -FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVE 916
             F    D+  ++D+   N+R+ ESL+ AGA D  G++R  L+     ++D++    +  +
Sbjct: 885  MFRDFSDYLDKIDTLPCNKRITESLIKAGAFDSLGHTRKGLMLVYEDAVDSVIATKKAAD 944

Query: 917  KNRTNKHENIFAHEK----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
            K + +   +  A  +    G F   +  +K+  ++       E+ +LG Y SGHPLD Y+
Sbjct: 945  KGQFDLFASFGAEAEDEVGGFFQIAVPDDKWDRKH---ELALEREMLGLYVSGHPLDGYE 1001

Query: 973  PIL 975
              L
Sbjct: 1002 DAL 1004


>gi|227524451|ref|ZP_03954500.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
 gi|227088410|gb|EEI23722.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
          Length = 1093

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 349/1006 (34%), Positives = 543/1006 (53%), Gaps = 64/1006 (6%)

Query: 43   AIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            A+A+TD N ++ A+EF      AGIQPIIG  L      NL      +  +    SI+LL
Sbjct: 12   ALAMTDINVMYGAVEFYDTCIDAGIQPIIGLTL------NLPGVMLSENNY----SILLL 61

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFF 161
                 GYQ L+++ +   L   G+  V I     Q  G  +GL ++    +   D     
Sbjct: 62   AKNQTGYQNLLKIST---LKSSGETDVMID----QLNGRLDGLYVILPPFAEINDLLLQG 114

Query: 162  NSSQVAEKRLLTFKKLFGDRLYVNLQRHR---GYDRYRESQVV----QLAYTHELPLVAT 214
             S+ ++E        L    + + L +     G D +    ++    ++A  +++ L+A 
Sbjct: 115  KSADISE--------LISKLMDLGLTKQDLKFGVDYHSSDTLIDMLSKVAADNQVQLIAD 166

Query: 215  NNSLFLSEEDYEAHDVLMAVAHSTVVSQ--KDRPRVTPDHYLKNRSEMVSIFS--DLPEA 270
                +L+ EDY    VL A+A  T +S   +   +V P ++L+ + +M   +    L  A
Sbjct: 167  APVQYLNAEDYFPMQVLKAIAAGTKISNVAELSQQVGP-YFLRPQDQMEKEYQRLHLNAA 225

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
            L+   E+   C   ++   P LP+F  +  +D+  E    LR     GL  RL    I+ 
Sbjct: 226  LQAIDEVVSNCHVEIKKKQPKLPQF--ETPNDM--EPGQYLRQLCEKGLSKRLEAAHISD 281

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                  YR RLD EL+VI  M F  YFLIV D I +A +  I  GPGRGS AGS+ AY L
Sbjct: 282  D---APYRHRLDRELSVIHSMGFDDYFLIVWDVINFAHQARIITGPGRGSAAGSLVAYTL 338

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             ITD+DP+++ LLFERFLNP+R+ MPD D+D   D+RD+VI+YV  KYGH+RVAQIITFG
Sbjct: 339  FITDVDPIKYELLFERFLNPERVQMPDIDLDIPDDKRDDVIQYVHQKYGHQRVAQIITFG 398

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            +L AK A RDVGR   +  +Q D   K IP+  A  V+L     +S+  +  +AD  +++
Sbjct: 399  TLAAKQATRDVGRVFGLNPNQQDVWSKAIPS--AFHVTLADAYHNSQQLKNLVADSDLNK 456

Query: 511  -LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
             L + +Q LEGL RH STHAAG+V+ D  L  LVP+ +D    L +TQ++  ++E  GL+
Sbjct: 457  SLFKTAQVLEGLPRHYSTHAAGLVLSDNLLVDLVPL-QDGNDGLLMTQYSKDYVESVGLL 515

Query: 570  KFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGL+ LT+L  +L  + Q  G K+++S IP DD +T  L     T G+FQ ESSG+
Sbjct: 516  KIDFLGLRNLTILADALAEIKQATGQKINISQIPLDDKKTLKLFANGETTGVFQFESSGI 575

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            R  L  + P+  ED+  + +LYRPGP++NI     RK+ +E +      +  +LK T GV
Sbjct: 576  RSVLRRLHPEQFEDVALVNALYRPGPMENIDEVVKRKSHQEALTYPDQSLKDILKSTYGV 635

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQVM +A  ++G+SL +AD+LRRAM KK  + MD+ K  F++GA K G  K +A  
Sbjct: 636  IVYQEQVMLVASKMAGFSLGQADILRRAMSKKKLKVMDRMKSLFLTGAEKRGHPKQVAEK 695

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            +F+ + KFA+YGFNKSHA AY+ ++Y+ A++K ++P EF  A +    ++  K+K++  D
Sbjct: 696  VFDYIEKFANYGFNKSHAVAYSKMAYELAYLKVYFPGEFHVALLNSVQNSSVKMKEYLSD 755

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLED 867
            A+   ++++ P +N    DF   D +I + LA+IKGV     + I+ +   +  + S  +
Sbjct: 756  AKSMGVKVVAPDINKSRADFSYQDQQIVFGLASIKGVRHDMVQDILNDRDQNGRYKSFPN 815

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
              +R+  K     ++ +L+++GALD F Y+R +L+ +        Q      +    ++F
Sbjct: 816  LLARLSDKYRKPDLINALIYSGALDGFSYNRSELISAAPEFISSIQL-----SGDSMSLF 870

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               + T   K  +          R E E   LG Y SGHP++ +  + +++  K   + V
Sbjct: 871  KALEPTVPRKPEMPLMQ------RLEKENDYLGAYLSGHPVERFTALRKRLDAKLTNQLV 924

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +  N + L   +   +  +T+ G ++ +   S+   E     FP
Sbjct: 925  VGM--NQVVLILYITKVKIIRTKTGKQMAFFDGSDEVGEMSVTVFP 968


>gi|257898944|ref|ZP_05678597.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
 gi|257836856|gb|EEV61930.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
          Length = 1103

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 341/1036 (32%), Positives = 537/1036 (51%), Gaps = 72/1036 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     GIQPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++     N G         ++       GYQ+L++L SR  + ++      
Sbjct: 63   IGLHLSYTYEEK----NYG---------LLAYAKDETGYQQLMKLSSRKMIQEK------ 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFGDRLYVN 185
              ++    I T+ L+ +   +   +  AF     FF+  Q         + +F    Y+ 
Sbjct: 104  --MALDDMIETDHLVFVVPANHS-VSEAFNKEEHFFSHWQ------FLLENVFAKDFYIG 154

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD- 244
            L  +   D+  E    Q       PL A +    L +ED  A +V+  +   + +  +  
Sbjct: 155  LSENTP-DQLPEW--YQYVTKENYPLCALHPIASLQQEDLFALEVMKHIKEGSQMPLESL 211

Query: 245  -RPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + + YL +  EM+  F +  L +A+     +A   SF  Q H  +LP +   +  
Sbjct: 212  SAPLPSANGYLLSEQEMIKRFEEAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPQG- 270

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               K+    LR    + +E R+         + ++YR+RLD+EL+VI +M F  YFLIV 
Sbjct: 271  ---KQAGEYLRELCYSQVEHRIVD-------YTKEYRERLDYELSVIHQMGFDDYFLIVW 320

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D
Sbjct: 321  DVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLD 380

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
               +RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN
Sbjct: 381  IPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPN 440

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 ++ QA     +  E   A      L + +  LEGL RH STHAAG+VI DR L +
Sbjct: 441  QLKITLT-QAYKTSRQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDRNLLE 499

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            LVP+ R    +  +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  
Sbjct: 500  LVPLQRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGQEIRLKE 558

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  
Sbjct: 559  IPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNIDT 618

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RK GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK
Sbjct: 619  FIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKK 678

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K+ +D++K  F+SGA + G S+  AV ++E + KFA+YGFN+SHA AY+ + +Q A++K
Sbjct: 679  KKDVLDEEKSHFVSGALQQGYSEKTAVTVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLK 738

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSL 839
             H+P  F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L
Sbjct: 739  AHHPGAFFTSLMNSVRHNTTKLKEYIAEARKNKLKLSSPSINQSNYSFELVNKEEIRFGL 798

Query: 840  AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKG+       ++ E   + PF S++ F  R+D + L   +L+SL   G  D    +R
Sbjct: 799  TAIKGIRRDFVEDVLNERKQNGPFKSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNR 858

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             QL+  L+   K    V    +     I A ++   +D    E+  +E   +        
Sbjct: 859  KQLMLDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL-------- 908

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIGW 1017
             G Y SGHP + +     ++ +    + +  I  N  + L  M+   ++ +T+KG  + +
Sbjct: 909  -GVYLSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLLMIKEVREIRTKKGELMAF 963

Query: 1018 VTFSEPAKEYEANFFP 1033
            V  ++ + E     FP
Sbjct: 964  VEGTDSSGEISVTVFP 979


>gi|300361563|ref|ZP_07057740.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus gasseri
            JV-V03]
 gi|300354182|gb|EFJ70053.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus gasseri
            JV-V03]
          Length = 1038

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 337/1032 (32%), Positives = 540/1032 (52%), Gaps = 53/1032 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQ  SS++LLE    + ++ +        A+A+TD N  +  + F + A   GI+P++
Sbjct: 4    VSLQNLSSFTLLESPTKVKDLAENAKKKGYSALALTDVNITYGLVNFYKAAKETGIKPLL 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVR 130
            G QL I+          G         ++++    +GY+ ++ L S + LL + G++   
Sbjct: 64   GMQLRIN----------GLVDQANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENV 113

Query: 131  ICLSWLQE-IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQ 187
            + L  L++ +G   L+++T  +     +    N+ ++    + T K        +Y+ + 
Sbjct: 114  LELEELKKYLGH--LVIITPSNIHSELKMLQANNPKMGANYIRTLKDSVPTSSSIYLGVY 171

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
              +G   Y  + +  LA   EL L A  +  +L+  +      L A+  +T +   ++  
Sbjct: 172  ADQGQQEYI-NYLRSLATQFELLLTAVEDGQYLNRNEQFLRRTLQAIKSNTHLENIEQLA 230

Query: 247  RVTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            +    HYLKN  E+   +   ++ +ALEN  +I + CS  +    P LP+F + +     
Sbjct: 231  KQAGSHYLKNSEELQVNYRKFEIEDALENAEKIGQICSAQITFQDPQLPKFKQNKF---- 286

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L + A  GL  R       KG   + Y+ RLD+EL VI  M F  YFLIV D +
Sbjct: 287  PTSKEYLHSLAQNGLAKRF------KGRIPEKYQARLDYELKVINEMGFDDYFLIVWDVM 340

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A   +I  GPGRGS AGS+ +YAL IT++DPL ++LLFERFLNP R  MPD D+D   
Sbjct: 341  NFAHSVHITTGPGRGSAAGSLVSYALRITEVDPLEYNLLFERFLNPARQQMPDIDLDIPD 400

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDEVI+Y+  KYG    AQI+TFG+L AK  L+DV R   +   +  R    IP+   
Sbjct: 401  NRRDEVIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHAKG 460

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 +A       +     +     L   ++ LE L RH S HAAG+VI D  L+++V 
Sbjct: 461  KITLAEAYQKSKELQLLVNTNAFSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVG 520

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +       +PVTQ     +E  GL+K DFLGL+ LT+L   +  L   GV++D + IP +
Sbjct: 521  LQAGPLG-IPVTQQTKLNVESLGLLKIDFLGLRNLTILGNIIAALKSEGVEIDPNQIPLN 579

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D ET  L     T  +FQ ES G+++ LE + PD  EDI+A+ +LYRPGP++NI  + NR
Sbjct: 580  DQETLALFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPMNNIGHFINR 639

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GKEK+    P +  +L  T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK  + 
Sbjct: 640  KHGKEKVQYPDPSLKKILGPTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNADV 699

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + K++E+FI GA K G  K IA  +++ +A+FA+YGFN+SHA AY+ I++  A+ K HYP
Sbjct: 700  IQKEREKFIQGAVKLGRRKEIAEQVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYP 759

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
              F  + +   + N  KI ++   A++  I+ +PP +     DF + + +I   L A++G
Sbjct: 760  GAFYLSLLNSNIGNRNKIAQYLMQAQEAGIKTLPPDIENSKADFSLENGKILVGLKAVRG 819

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            + +   + I+E    +P  S+ DF  ++D+  L+   + +L+ AGA D    +R +LL+ 
Sbjct: 820  LRSDLLKQILEIK--RPIKSMTDFLWKIDNNLLSADAIANLIKAGAFDRLAPNRNELLKI 877

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF--SVENSSVRFENEQRVLGFY 962
              ++ +  +    N +     +F     T   KI  EK   + E S++  E     +GF 
Sbjct: 878  NKDLVESVKMAGSNLS-----LFE----TLEPKIEEEKMPTAAEKSAMEVE----AMGFS 924

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFS 1021
               +P+   +   RK   K     +     N   +A   + K +Q  T+KG  + +  FS
Sbjct: 925  TGINPIIAVQKYARKYNAK----RLQAFENNEQGIAVGKLMKIKQITTKKGDNMAFAVFS 980

Query: 1022 EPAKEYEANFFP 1033
            + + + +   FP
Sbjct: 981  DSSGDKDFTIFP 992


>gi|300214577|gb|ADJ78993.1| DNA polymerase III alpha subunit [Lactobacillus salivarius CECT 5713]
          Length = 1097

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 336/1034 (32%), Positives = 541/1034 (52%), Gaps = 65/1034 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV SSYSLL+  L +   +         A+ +TD N+++  L+F  +   AGI+PI
Sbjct: 2    YAPLQVLSSYSLLQSPLRIPEYVKLGKELGYNALVLTDINSMYGVLDFYHECVKAGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-RMYLLDQGKQSV 129
            IG  L             G   +      + +   + GYQ L+ + S R+  +D+  +++
Sbjct: 62   IGITL-----------QSGDDEY------IFIAKNSNGYQNLMNISSKRLTAVDENYKNI 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               L+ + E   + +++L        D      S QV E + L       +  Y  +  +
Sbjct: 105  -FKLADITEYLQDVIVILKPSYLTVND----IISDQVTELQTLVSA---AETTYYGVNPN 156

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               DR   +  +  A   +L  +      +L E DY +  VL A+     V+     +  
Sbjct: 157  ---DRDAINNDLMAAEKLQLETILLTPVKYLKERDYFSTKVLQAIGTGENVNPNWNFK-N 212

Query: 250  PDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +YL    E   + +D L  A +N + +  +C+  L      LP F  KE + +    E
Sbjct: 213  DGNYLHTPEEYERLGTDYLSSAYQNAINVIAQCNLTLNFPKTQLPHF--KETNGLS--SE 268

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL  R+A+  I    + ++Y+ RLD+EL+VI RM F  YFLIV D   +A 
Sbjct: 269  GFLRKLCQEGLAKRIAEENIK---NQEEYQNRLDYELSVIHRMGFDDYFLIVWDVTNFAH 325

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +NNI  GPGRGS AGS+ +Y L ITDIDP+++ L+FERFLN +R  MPD D+D    +RD
Sbjct: 326  ENNILTGPGRGSAAGSLVSYTLYITDIDPIKYDLIFERFLNEERAQMPDIDLDIPDIKRD 385

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             +I Y+  KYG + +AQIITFG+L+ K  LRDV R   +   + D   K IP +  + ++
Sbjct: 386  TIIEYLHQKYGQQHMAQIITFGTLKTKQVLRDVARVFDLKTYEADAWSKAIPKE--YGIT 443

Query: 489  LQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L+     S+  +  +AD S +RLL E +  LEGL RH STHAAGI++ D  L   VP+  
Sbjct: 444  LKEAYASSQSLKNLVADNSKNRLLFETAIALEGLPRHYSTHAAGIILSDDDLIDHVPV-- 501

Query: 548  DVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IPFD 604
             +  D + ++QF    +E+ GL+K DFLGL+ L++L+ ++  L ++G  VD  +  I  D
Sbjct: 502  QIGGDGILMSQFAKNQVEEVGLLKMDFLGLRNLSILENTIT-LIKKGYHVDFDIRKINLD 560

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D ET  +     T G+FQ ES+G+R  L  ++P   ED+ A+ +LYRPGPI NI  +  R
Sbjct: 561  DPETLKIYQNAETSGVFQFESAGIRGVLTKLKPTSFEDVAAVNALYRPGPIQNIDEFIAR 620

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+  I      ++ +LK+T G+++YQEQVMQ+A  + G++L +AD LRRAM KK  + 
Sbjct: 621  KHGERPITYPSKELEGILKQTYGIMVYQEQVMQVASTMGGFTLGQADSLRRAMSKKKHDI 680

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + + +  FI+GA K G +  +A  ++  + +F DYGFN+SHA AY+ +S++ A++K HYP
Sbjct: 681  ISRMEVMFINGAMKKGYTHEVAKKVYAYIMEFGDYGFNRSHAVAYSKMSFELAYIKAHYP 740

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
              F AA +   + N  K K +  +A+   +++  P +N     + + +  IY+ L+ IK 
Sbjct: 741  AAFFAALLNSVIGNPRKTKDYVLEAKNKGVRVHHPDINISQSLYILRNGEIYFGLSCIKS 800

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL- 902
            +     + I+ E   +  F ++EDF  R+D + L R ++E L+++G  D FG SR +L  
Sbjct: 801  LRKNFLQDILQERKRNGIFKNMEDFLQRIDKRYLKRELIEILIYSGVFDTFGQSRRELFA 860

Query: 903  ---QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
               + L NI+     VE         +F+        K T+EK  + N  +  E E   L
Sbjct: 861  MLPRLLSNIELSGNNVE---------LFSM---LAPKKTTVEKIEISNDEL-LEKENYYL 907

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G Y SGHP++ Y  ++         +   + +   + +   +   +  +T+ GS++ +VT
Sbjct: 908  GAYLSGHPVEKYTELIYLTNSTRVSQINESNKDKYVSMILQIKVIKIIRTKNGSQMAFVT 967

Query: 1020 FSEPAKEYEANFFP 1033
             ++     +  FFP
Sbjct: 968  AADQTGNMDLTFFP 981


>gi|301301229|ref|ZP_07207385.1| DNA polymerase III, alpha subunit [Lactobacillus salivarius
            ACS-116-V-Col5a]
 gi|300851228|gb|EFK78956.1| DNA polymerase III, alpha subunit [Lactobacillus salivarius
            ACS-116-V-Col5a]
          Length = 1097

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 335/1034 (32%), Positives = 543/1034 (52%), Gaps = 65/1034 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV SSYSLL+  L +   +         A+ +TD N+++  L+F  +   AGI+PI
Sbjct: 2    YAPLQVLSSYSLLQSPLRIPEYVKLGKELGYNALVLTDINSMYGVLDFYHECVKAGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-RMYLLDQGKQSV 129
            IG  L             G   +      + +   + GYQ L+ + S R+  +D+  +++
Sbjct: 62   IGITL-----------QSGDDEY------IFIAKNSNGYQNLMNISSKRLTAVDENYKNI 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               L+ + E   + +++L        D      S QV E + L       +  Y  +  +
Sbjct: 105  -FKLADITEYLQDVIVILKPSYLTVND----IISDQVTELQTLVSA---AETTYYGVNPN 156

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               DR   +  +  A   +L  +      +L E DY +  VL A+     V+     + +
Sbjct: 157  ---DRDAINNDLMAAEKLQLETILLTPVKYLKERDYFSTKVLQAIGTGENVNPNWNLK-S 212

Query: 250  PDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +YL    E   + +D L  A +N + +  +C+  L      LP F  KE + +  E+ 
Sbjct: 213  DGNYLHTPEEYERLGADYLSSAYQNAINMIAQCNLTLNFPKTQLPHF--KETNGLSSEDF 270

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL  R+A+  I    + ++Y+ RLD+EL+VI RM F  YFLIV D   +A 
Sbjct: 271  --LRKLCQEGLAKRIAEENIK---NQEEYQSRLDYELSVIHRMGFDDYFLIVWDVTNFAH 325

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +NNI  GPGRGS AGS+ +Y L ITDIDP+++ L+FERFLN +R  MPD D+D    +RD
Sbjct: 326  ENNILTGPGRGSAAGSLVSYTLYITDIDPIKYDLIFERFLNEERAQMPDIDLDIPDIKRD 385

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             +I Y+  KYG + +AQIITFG+L+ K  LRDV R   +   + D   K IP +  + ++
Sbjct: 386  TIIEYLHQKYGQQHMAQIITFGTLKTKQVLRDVARVFDLKTYEADAWSKAIPKE--YGIT 443

Query: 489  LQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L+     S+  +  +AD S +RLL E +  LEGL RH STH+AGI++ D  L   VP+  
Sbjct: 444  LKEAYASSQSLKNLVADNSKNRLLFETAIALEGLPRHYSTHSAGIILSDDDLVDHVPV-- 501

Query: 548  DVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IPFD 604
             +  D + ++QF    +E+ GL+K DFLGL+ L++L+ ++  L ++G  +D  +  I  D
Sbjct: 502  QIGGDGILMSQFAKNQVEEVGLLKMDFLGLRNLSILENTIT-LIKKGYHIDFDIRKINLD 560

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D ET  +     T GIFQ ES+G+R  L  ++P   ED+ A+ +LYRPGPI NI  +  R
Sbjct: 561  DPETLKIYQNAETSGIFQFESAGIRGVLTKLKPTSFEDVAAVNALYRPGPIQNIDEFIAR 620

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+  I      ++ +LK+T G+++YQEQVMQ+A  + G++L +AD LRRAM KK  + 
Sbjct: 621  KHGERPITYPSKELEGILKQTYGIMVYQEQVMQVASTMGGFTLGQADSLRRAMSKKKHDI 680

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + + +  FI+GA K G +  +A  ++  + +F DYGFN+SHA AY+ +S++ A++K HYP
Sbjct: 681  ISRMEVMFINGAMKKGYTHEVAKKVYAYIMEFGDYGFNRSHAVAYSKMSFELAYIKAHYP 740

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
              F AA +   + N  K K +  +A+   +++  P +N     + + +  IY+ L+ IK 
Sbjct: 741  AAFFAALLNSVIGNPRKTKDYVLEAKNKGVRVHHPDINISQSLYILRNGEIYFGLSCIKS 800

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL- 902
            +     + I+ E      F ++EDF  R+D + L R +++ L+++G  D FG SR +LL 
Sbjct: 801  LRKNFLQDILQERKRSGIFKNMEDFLQRIDKRYLKRELIDILIYSGVFDTFGQSRKELLA 860

Query: 903  ---QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
               + L NI+     VE         +F+        K T+EK  + N  +  E E   L
Sbjct: 861  MLPRLLSNIELSGNNVE---------LFSM---LAPKKTTVEKIKISNDEL-LEKENYYL 907

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G Y SGHP++ Y  ++         +   + +   + +   +   +  +T+ GS++ +VT
Sbjct: 908  GAYLSGHPVEKYTELIYLTNSTRVSQINESNKDKYVSMILQIKVIKIIRTKNGSQMAFVT 967

Query: 1020 FSEPAKEYEANFFP 1033
             ++     +  FFP
Sbjct: 968  AADQTGNMDLTFFP 981


>gi|308234386|ref|ZP_07665123.1| DNA polymerase III, alpha subunit [Atopobium vaginae DSM 15829]
 gi|328944202|ref|ZP_08241666.1| DNA polymerase III [Atopobium vaginae DSM 15829]
 gi|327491121|gb|EGF22896.1| DNA polymerase III [Atopobium vaginae DSM 15829]
          Length = 1302

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 340/1061 (32%), Positives = 538/1061 (50%), Gaps = 114/1061 (10%)

Query: 67   IQPIIGCQLD-IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-----RMY 120
            I+PI GC+ + I  Q   K T Q +        + LLV  A GY  L++++S      MY
Sbjct: 125  IKPIFGCEANLIPDQCIEKGTPQKRY------HLTLLVKNAVGYVNLMKMMSLAANQMMY 178

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                     R   + L++   EGLI L+G + G I +         A      FK LFGD
Sbjct: 179  Y------KPRTTFAMLEKY-HEGLICLSGCAHGVIAQMIVTQQYDAARAWAQKFKALFGD 231

Query: 181  RLYVNLQRH----RGYDRYRES----QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
              Y+ +Q H      ++   E     ++VQL     + +VATN++ +  ++D E  D+L 
Sbjct: 232  DFYLEIQDHGVSLDSWNGMSEQMIAQRIVQLGKEEGIAVVATNDNHYFHQDDVETRDILS 291

Query: 233  AVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVH 288
             +  +T + +  +  +   + Y K+  +M ++F+ +PEA++ +V IA +CSF L    ++
Sbjct: 292  CIGANTHLDENYQSTLPGSEFYFKSEEQMRALFAWVPEAVDESVRIAAKCSFELDWTHMY 351

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             P  P   E E        E   R++   GL  +  +       +  + ++R ++E  VI
Sbjct: 352  LPKFPGLREGET------SEERFRSECEQGLARKYGKQWQDVTINGVNVKERFEYEYGVI 405

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
                F+ YFLIV ++++WAK++ I VGPGRGS AG++ AYA+ IT  DPL   L+FERFL
Sbjct: 406  CFKGFADYFLIVQEYVRWAKEHGIGVGPGRGSAAGAIVAYAMDITAFDPLENGLMFERFL 465

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            + +R  MPD D+DF  +RR EV+++V+  YG +RV  +IT+ +++AK A+ D  R L  P
Sbjct: 466  SLERTEMPDIDMDFDDERRLEVVQHVRELYGSDRVCHVITYSTIKAKQAINDAARVLGYP 525

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSR-------FREARLADPSVDRLLEISQKLEGL 521
             +   +L K++ +DP   +       + +       F +A   +    R+++ ++ +EG+
Sbjct: 526  VATAQKLSKMVSSDPKTKLKFVLSKTEGKEDMYNPDFVDAYHNNGDEHRIIDAARSIEGI 585

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HA  I+I   P++  VP   D +  + +TQ+    +   GL+K DFLGL+TLT+
Sbjct: 586  IRGEGVHACAILIAPTPVNDHVPTKLDTKGGVEITQYEGHSVADMGLLKMDFLGLRTLTV 645

Query: 582  LQKSLDFLAQR------------GVK-----------VDLSLIPFDDHETYHLLTTKGTL 618
            + K+LD +               GVK           +D   IPF D   + L+ +  T 
Sbjct: 646  ISKALDNIRASYPDLSKLDSLGDGVKACLKPGATCIDIDPQKIPFTDPRIFQLVGSGRTA 705

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP 676
            G+FQ+ES GM   ++ M+P     I+AL++LYRPGP+   +V  Y NR NG+E +V    
Sbjct: 706  GVFQIESEGMTATIKNMKPKEFRQIVALIALYRPGPLGAGMVTSYINRMNGREPVVFYDD 765

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV-LRRAMGKK---------IKEEMD 726
             +  +L ET G I+YQEQVMQI+  +SG+S  E+D  +R+ + KK            E  
Sbjct: 766  RLSDILDETYGTIVYQEQVMQISVKMSGFSKGESDSKIRKPVAKKKIALLTSTIFHWENG 825

Query: 727  KQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            + +   + +++GAS NG  K +A  I++ + +FA Y FNKSH+A YA++  QTAW+K ++
Sbjct: 826  RDETTYDHWMNGASANGYKKEVAQRIWDDVLEFASYAFNKSHSAGYAILVMQTAWLKAYF 885

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P E++A+ +T  M    KI  +        I+I+PP +N    DF      I +  A I+
Sbjct: 886  PREYMASVLTSYMGKTNKIVHYISACNHEGIKILPPDINESGRDFTATPQGIRFGFAGIR 945

Query: 844  GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      IM E   + PF +L DF  RV+S + NRRV+E+L+ AGA D  GY R QL+
Sbjct: 946  GVGENVGIAIMQERKKNGPFANLHDFVKRVNSAQANRRVVEALIKAGAFDSCGYPRKQLM 1005

Query: 903  QSLD-----NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN--- 954
              +D     NI   A   EK+R+    ++F +  GT       EK    +   R+E+   
Sbjct: 1006 GFIDKNNPKNIIDEAARHEKDRSMGQLSLFDY-FGTVEGSGFEEKIPPADPHDRWEDGFM 1064

Query: 955  ---EQRVLGFYFSGHPLDVYKPILRK---MGIKGYEESVATI--------------RGNN 994
               E+ VLG Y + HPL  Y+  LR+     +   EES   I               G  
Sbjct: 1065 LSQEREVLGIYVTDHPLRPYQVALRRSRDFTLSELEESKEVIDEQSGATHLEYKVPEGKT 1124

Query: 995  IRLAAMVVSK--QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            I LA M  +   Q++ T+ G ++  VT  +   +     FP
Sbjct: 1125 IHLAGMTATGLIQRRLTKTGKQMAIVTLEDMEGQIPLVVFP 1165



 Score = 41.2 bits (95), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          +FVHL  HS +S+L+ + S+ N++D   A    A+A+TD   +F   +F
Sbjct: 2  AFVHLHNHSFFSVLDASTSIQNMVDAAVAQHMHALALTDHAYMFGIPDF 50


>gi|293571121|ref|ZP_06682160.1| DNA polymerase III subunit alpha [Enterococcus faecium E980]
 gi|291608803|gb|EFF38086.1| DNA polymerase III subunit alpha [Enterococcus faecium E980]
          Length = 1103

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 340/1036 (32%), Positives = 536/1036 (51%), Gaps = 72/1036 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     GIQPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++     N G         ++       GYQ+L++L SR  + ++      
Sbjct: 63   IGLHLSYTYEEK----NYG---------LLAYAKDETGYQQLMKLSSRKMIQEK------ 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFGDRLYVN 185
              ++    I T+ L+ +   +   +  AF     FF+  Q         + +F    Y+ 
Sbjct: 104  --MALDDMIETDHLVFVVPANHS-VSEAFNKEEHFFSHWQ------FLLENVFTKDFYIG 154

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD- 244
            L  +   D+  E    Q       PL A +    L +ED  A +V+  +   + +  +  
Sbjct: 155  LSENTP-DQLPEW--YQYVTKENYPLCALHPIASLQQEDLFALEVMKHIKEGSQMPLESL 211

Query: 245  -RPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + + YL +  EM+  F +  L +A+     +A   SF  Q H  +LP +   +  
Sbjct: 212  SAPLPSANGYLLSEQEMIKRFEEAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPQG- 270

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               K+    LR    + +E R+         + ++YR+RLD+EL+VI +M F  YFLIV 
Sbjct: 271  ---KQAGEYLRELCYSQVEHRIVD-------YTKEYRERLDYELSVIHQMGFDDYFLIVW 320

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D
Sbjct: 321  DVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLD 380

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
               +RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN
Sbjct: 381  IPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPN 440

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 ++ QA     +  E   A      L + +  LEGL RH STHAAG+VI DR L +
Sbjct: 441  QLKITLT-QAYKTSRQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDRNLLE 499

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            LVP+ R    +  +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  
Sbjct: 500  LVPLQRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGQEIRLKE 558

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  
Sbjct: 559  IPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNIDT 618

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RK GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK
Sbjct: 619  FIARKKGKEAIHYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKK 678

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K+ +D++K  F+SGA + G  +  AV ++E + KFA+YGFN+SHA AY+ + +Q A++K
Sbjct: 679  KKDVLDEEKSHFVSGALQQGYLEKTAVTVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLK 738

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSL 839
             H+P  F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L
Sbjct: 739  AHHPGAFFTSLMNSVRHNTTKLKEYIAEARKNKLKLSSPSINQSNYSFELVNKEEIRFGL 798

Query: 840  AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKG+       ++ E   + PF S++ F  R+D + L   +L+SL   G  D    +R
Sbjct: 799  TAIKGIRRDFVEDVLNERKQNGPFKSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNR 858

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             QL+  L+   K    V    +     I A ++   +D    E+  +E   +        
Sbjct: 859  KQLMLDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL-------- 908

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIGW 1017
             G Y SGHP + +     ++ +    + +  I  N  + L  M+   ++ +T+KG  + +
Sbjct: 909  -GVYLSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLLMIKEVREIRTKKGELMAF 963

Query: 1018 VTFSEPAKEYEANFFP 1033
            V  ++ + E     FP
Sbjct: 964  VEGTDSSGEISVTIFP 979


>gi|257870428|ref|ZP_05650081.1| DNA polymerase III E [Enterococcus gallinarum EG2]
 gi|257804592|gb|EEV33414.1| DNA polymerase III E [Enterococcus gallinarum EG2]
          Length = 1102

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 338/1044 (32%), Positives = 535/1044 (51%), Gaps = 91/1044 (8%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             L   S+YSLL+  + +   +          + + D N L+ ALEF Q+   AGI+P+IG
Sbjct: 4    QLTTLSAYSLLQSTIKIPRYIAAAKKAGYKVLGLADHNVLYGALEFYQQCQNAGIKPVIG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
               D                FP    + L      GY+ L+ L S   +   G   +   
Sbjct: 64   VLFDCTF-------GTSTMRFP----LYLFAKNLSGYRLLMRLSSEKMI--NGHLDLSEY 110

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE--KRLLTFKKLFGDR-LYVNLQRH 189
            L+     G    I+  G    P        S  +A+  + L  F   F  + L++ +Q+ 
Sbjct: 111  LTLPDLFG----ILPQGQGFSPD------QSEDLAQLSRALTDFVARFDQKSLFLGVQKA 160

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--QKDRPR 247
                     Q       H L L A      L + +  A  V+  + + T +   +K + +
Sbjct: 161  AATPEREWFQ------QHGLELCAYQPVAALEQAELFAVQVMEHIKNGTQIEDFRKAKEQ 214

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +  +YL+  +E++  F +  EAL N   IA  C+  + +H  +LP F  +E ++     
Sbjct: 215  SSETYYLEQPAELIQAFGENSEALVNNQRIAEECTLTIPLHQRLLPHFPLEEGEN----A 270

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR      L  R+ Q           YRQRLD+EL+VI  M F  YFLI+ D + +A
Sbjct: 271  ADFLRKLCFEKLSERITQVT-------DIYRQRLDYELSVIHTMGFDDYFLIIWDVMDFA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             KN I  G GRGS AGS+ A+ L ITD+DP+ + LLFERFLNP+R +MPD D+D   +RR
Sbjct: 324  HKNEIVTGAGRGSAAGSLVAFVLAITDVDPIEYDLLFERFLNPERYTMPDIDLDIPDNRR 383

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE++ YV+ KYG E +AQI TFG++ AK  LRDV R   +  S+ +R  K IPN     +
Sbjct: 384  DEILHYVRQKYGQEYMAQIATFGTMAAKMVLRDVSRVFGLSQSEANRWSKAIPNALKMTL 443

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            +L A    ++ RE    +   + +  +++ LEGL RH STHAAG+VI D+ L  LVP+ +
Sbjct: 444  AL-AYEQSNQLRELATFNERNETMFAVAKVLEGLPRHVSTHAAGVVISDKNLLDLVPLQQ 502

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VDLSLI 601
                ++ +TQF M  +E  GL+K DFLGL+ L+++  +L     RG+K      V    I
Sbjct: 503  G-SDEILLTQFTMNDVETVGLLKMDFLGLRNLSIIDNTL-----RGIKRVTNETVTQKAI 556

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P +D     L     T GIFQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +
Sbjct: 557  PLNDPAVLRLFQQGDTAGIFQFESAGIRNVLRKLGPESIEDIAAVNALYRPGPMQNIDTF 616

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK G+EK+V     + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK 
Sbjct: 617  IRRKKGQEKVVYPDAALVPILQNTYGIIVYQEQIMQVASKMAGFSLGQADILRRAISKKK 676

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K+ +D+++  F+ GA  N  S   A  +++ + +FA+YGFN+SHA AY+ I +Q A++K 
Sbjct: 677  KDVLDEERRHFVEGAVANHFSAEKAEEVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKV 736

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLA 840
            HYP  F AA +    +N  K+K++  +A ++ + I+PPS+N     F +  + +I +  +
Sbjct: 737  HYPGPFFAALLHSVRNNPGKLKEYLNEATRYGVAILPPSINKSGYSFYLQSEKQIRFGFS 796

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGALDCFGY 896
            ++KG+     + I+ E   +  F SL+ F  R+   ++K L    +  L+  GA D    
Sbjct: 797  SVKGIRRDLIQDILDERKENGTFSSLDQFLLRLHQKNNKWLKEDYIRPLLSIGAFDELVT 856

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV------ 950
            +R Q L  L+               K +NI  +  G+      LE  +++ + V      
Sbjct: 857  NRKQALIQLE--------------GKIQNI-TYSGGSLD---LLETMALKEAEVADYDLE 898

Query: 951  -RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             +   E+  LG Y SGHP+  Y+ + +        + V   R   +R+   V   ++ +T
Sbjct: 899  QKLALEEEYLGVYLSGHPVQQYQKLQQLKQTIAIADLVPNER---VRILFYVRQIREIRT 955

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            +KG ++ ++  ++ +KE     FP
Sbjct: 956  KKGEQMAFLEGTDASKEVSITVFP 979


>gi|257888619|ref|ZP_05668272.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,141,733]
 gi|257824673|gb|EEV51605.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,141,733]
          Length = 1103

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 338/1036 (32%), Positives = 535/1036 (51%), Gaps = 72/1036 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +      IQPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEEIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++     N G         ++       GYQ+L++L SR  + ++      
Sbjct: 63   IGLHLSYTYEEK----NYG---------LLAYAKDETGYQQLMKLSSRKMIQEK------ 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFGDRLYVN 185
              ++    I T+ L+ +   +   +  AF     FF+  Q         + +F    Y+ 
Sbjct: 104  --MALDDMIETDHLVFVVPATHS-VSEAFNKEEHFFSHWQ------FLLENVFTKDFYIG 154

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD- 244
            L  +      +  +  Q       PL A +    L +ED  A +V+  +   + +  +  
Sbjct: 155  LSENTPN---QLPEWYQYVTKENYPLCALHPIASLQQEDLFALEVMKHIKEGSQMPLESL 211

Query: 245  -RPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + + YL +  EM+  F +  L +A+     +A   SF  Q H  +LP +   +  
Sbjct: 212  SAPLPSANGYLISEQEMIKRFEEAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPQG- 270

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               K+    LR    + +E R+         + ++YR+RLD+EL+VI +M F  YFLIV 
Sbjct: 271  ---KQAGEYLRELCYSQVEHRIVD-------YTKEYRERLDYELSVIHQMGFDDYFLIVW 320

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D
Sbjct: 321  DVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLD 380

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
               +RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN
Sbjct: 381  IPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPN 440

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 ++ QA     +  E   A      L + +  LEGL RH STHAAG+VI DR L +
Sbjct: 441  QLKITLT-QAYKTSRQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDRNLLE 499

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            LVP+ R    +  +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  
Sbjct: 500  LVPLQRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGQEIRLKE 558

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  
Sbjct: 559  IPLNDAKTLPLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNIDT 618

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RK GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK
Sbjct: 619  FIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKK 678

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K+ +D++K  F+SGA + G S+  AV ++E + KFA+YGFN+SHA AY+ + +Q A++K
Sbjct: 679  KKDVLDEEKSHFVSGALQQGYSEKTAVTVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLK 738

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSL 839
             H+P  F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L
Sbjct: 739  AHHPGAFFTSLMNSVRHNTTKLKEYIAEARKNKLKLSSPSINQSNYSFELVNKEEIRFGL 798

Query: 840  AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKG+       ++ E   + PF S++ F  R+D + L   +L+SL   G  D    +R
Sbjct: 799  TAIKGIRRDFVEDVLNERKQNGPFKSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNR 858

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             QL+  L+   K    V    +     I A ++   +D    E+  +E   +        
Sbjct: 859  KQLMLDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL-------- 908

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIGW 1017
             G Y SGHP + +     ++ +    + +  I  N  + L  M+   ++ +T+KG  + +
Sbjct: 909  -GVYLSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLLMIKEVREIRTKKGELMAF 963

Query: 1018 VTFSEPAKEYEANFFP 1033
            V  ++ + E     FP
Sbjct: 964  VEGTDSSGEISVTVFP 979


>gi|227550594|ref|ZP_03980643.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257897003|ref|ZP_05676656.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|293378695|ref|ZP_06624853.1| DNA polymerase III, alpha subunit [Enterococcus faecium PC4.1]
 gi|227180302|gb|EEI61274.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257833568|gb|EEV59989.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|292642623|gb|EFF60775.1| DNA polymerase III, alpha subunit [Enterococcus faecium PC4.1]
          Length = 1103

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 338/1036 (32%), Positives = 535/1036 (51%), Gaps = 72/1036 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +      IQPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEEIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++     N G         ++       GYQ+L++L SR  + ++      
Sbjct: 63   IGLHLSYTYEEK----NYG---------LLAYAKDETGYQQLMKLSSRKMIQEK------ 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFGDRLYVN 185
              ++    I T+ L+ +   +   +  AF     FF+  Q         + +F    Y+ 
Sbjct: 104  --MALDDMIETDHLVFVVPATHS-VSEAFNKEEHFFSHWQ------FLLENVFTKDFYIG 154

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD- 244
            L  +      +  +  Q       PL A +    L +ED  A +V+  +   + +  +  
Sbjct: 155  LSENTPN---QLPEWYQYVTKENYPLCALHPIASLQQEDLFALEVMKHIKEGSQMPLESL 211

Query: 245  -RPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + + YL +  EM+  F +  L +A+     +A   SF  Q H  +LP +   +  
Sbjct: 212  SAPLPSANGYLISEQEMIKRFEEAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPQG- 270

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               K+    LR    + +E R+         + ++YR+RLD+EL+VI +M F  YFLIV 
Sbjct: 271  ---KQAGEYLRELCYSQVEHRIVD-------YTKEYRERLDYELSVIHQMGFDDYFLIVW 320

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D
Sbjct: 321  DVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLD 380

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
               +RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN
Sbjct: 381  IPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPN 440

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 ++ QA     +  E   A      L + +  LEGL RH STHAAG+VI DR L +
Sbjct: 441  QLKITLT-QAYKTSRQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDRNLLE 499

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            LVP+ R    +  +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  
Sbjct: 500  LVPLQRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGQEIRLKE 558

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  
Sbjct: 559  IPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNIDT 618

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RK GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK
Sbjct: 619  FIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKK 678

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K+ +D++K  F+SGA + G S+  AV ++E + KFA+YGFN+SHA AY+ + +Q A++K
Sbjct: 679  KKDVLDEEKSHFVSGALQQGYSEKTAVTVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLK 738

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSL 839
             H+P  F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L
Sbjct: 739  AHHPGAFFTSLMNSVRHNTTKLKEYIAEARKNKLKLSSPSINQSNYSFELVNKEEIRFGL 798

Query: 840  AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKG+       ++ E   + PF S++ F  R+D + L   +L+SL   G  D    +R
Sbjct: 799  TAIKGIRRDFVEDVLNERKQNGPFKSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNR 858

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             QL+  L+   K    V    +     I A ++   +D    E+  +E   +        
Sbjct: 859  KQLMLDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL-------- 908

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIGW 1017
             G Y SGHP + +     ++ +    + +  I  N  + L  M+   ++ +T+KG  + +
Sbjct: 909  -GVYLSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLLMIKEVREIRTKKGELMAF 963

Query: 1018 VTFSEPAKEYEANFFP 1033
            V  ++ + E     FP
Sbjct: 964  VEGTDSSGEISVTVFP 979


>gi|259500669|ref|ZP_05743571.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus iners
           DSM 13335]
 gi|302191358|ref|ZP_07267612.1| DNA polymerase III, alpha subunit [Lactobacillus iners AB-1]
 gi|259168053|gb|EEW52548.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus iners
           DSM 13335]
          Length = 1040

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 317/905 (35%), Positives = 494/905 (54%), Gaps = 36/905 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ  SS++LL+  +S+  ++D        AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6   LQNISSFTLLKSPISIEQLIDSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
           QL I+      + N+ +        ++++     GYQ ++ L S + L+ + GK+ + + 
Sbjct: 66  QLRIN-----GLINENQNF-----DLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRHR 190
           L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
               Y  S V  L+    L LVA  +  ++   D    +VL ++  +   S +D   +T 
Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDVFLQEVLQSIDDNQ--SIRDGYELTL 231

Query: 250 ---PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               +HYLK + ++   ++ L   EAL NT ++    +  ++   P LP+FI+ + D   
Sbjct: 232 KHVGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD--- 288

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                 L + A+ GL+ +  +  I        Y  RL +EL +I  M F+ YFLIV D I
Sbjct: 289 -TSYEFLHHLAMTGLQAKFNKHDIP-----AKYLNRLKYELKIIDEMGFNDYFLIVWDVI 342

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +     I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   
Sbjct: 343 NYCHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPD 402

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           +RR+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       ++   K IP   +
Sbjct: 403 NRRNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKS 462

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V 
Sbjct: 463 KITLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVG 522

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
           + ++    +PVTQ   K++E  GL+K DFLGL  LT+L  + + +   G+K+D+  IP D
Sbjct: 523 L-QNGSLGIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNAFNEVKMSGIKLDMDKIPLD 581

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D  T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  R
Sbjct: 582 DPATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRR 641

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           KN +EK+V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   E
Sbjct: 642 KNKEEKVVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSME 701

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M K    F++ A + G S + A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP
Sbjct: 702 MKKIGVDFVNRAVQQGHSASAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYP 761

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
            +F  A +   + + +K+ K+  D +  NI+I  P +N    +F + D   I   L +I 
Sbjct: 762 KQFYVALLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSII 821

Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
           G+       IM  +  +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL 
Sbjct: 822 GLRMDFVEQIM--NLQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLA 879

Query: 904 SLDNI 908
           S +++
Sbjct: 880 SYEDL 884


>gi|227488551|ref|ZP_03918867.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum
            ATCC 51867]
 gi|227543156|ref|ZP_03973205.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum
            ATCC 51866]
 gi|227091445|gb|EEI26757.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum
            ATCC 51867]
 gi|227180965|gb|EEI61937.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum
            ATCC 51866]
          Length = 1188

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 342/1018 (33%), Positives = 538/1018 (52%), Gaps = 70/1018 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+G   ++ + +++     PA+ +TD  N+F +  F +K  A GI+P
Sbjct: 5    SFVHLHNHTEYSMLDGMAKVDLLAEEVKRQGMPAVGMTDHGNMFGSDAFYRKMTAEGIKP 64

Query: 70   IIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSR 118
            IIG +  +  D + N K    G+ P      +          ++     G + L  L S 
Sbjct: 65   IIGIETYMAPDSRFNKKRVLWGE-PHQKRDDVSASGAYLHQTMIAENVTGLKNLFHLSSM 123

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID---RAFFFNSSQVAEKRLLTFK 175
                 Q  +  R+    + E   EG+I  TG  SG +    R   F+ +  A  R   ++
Sbjct: 124  ASYEGQLGKWPRMDAELISE-HAEGIIATTGCPSGDVQTRLRLGQFDEALAAAAR---WQ 179

Query: 176  KLFG-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
             ++G D  ++ L  H G D  R    Q++++     LP + TN+  ++ +     H+ ++
Sbjct: 180  DIYGKDNFFLELMDH-GLDIERRVRDQLLEIGKRLNLPPLVTNDCHYVLQSQSHDHEAML 238

Query: 233  AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAP 290
             V     +   DR +   D +Y+K  ++M   + ++ P A +NT+ IA R     ++  P
Sbjct: 239  CVQTGKTLQDPDRFKFGGDGYYIKTAAQMRDTWDNMVPGACDNTLWIAERVGDYSEIWEP 298

Query: 291  ILPRFIEKECDDIQKEEE--NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                       D+ + E   + L ++ + GL+ R     +      Q+Y  R  +E+ VI
Sbjct: 299  --HTHDRMPIADVPEGETPTSWLTHEVMEGLKRRFPDSEVP-----QEYIDRAKYEIEVI 351

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
                +  YFLIVA+ I+ A+   I VGPGRGS AGS+ AYA+TIT+IDP+   LLFERFL
Sbjct: 352  DFKGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGSLVAYAMTITNIDPMEHGLLFERFL 411

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--Q 466
            NP+R S PD DIDF   RR E+I Y   ++G +++AQ+ITFG+++ K AL+D  R    Q
Sbjct: 412  NPERPSAPDIDIDFDDRRRSEMITYAAERWGADKIAQVITFGTVKTKQALKDSARVQFGQ 471

Query: 467  MPYSQVDRLCKLIPNDPA---HPVSLQAIAD--DSRFREARL------ADPSVDRLLEIS 515
              Y   DR+ KL+P  PA     ++L+ I D  D R+ EA         DP V ++ E +
Sbjct: 472  PGYQIADRVTKLLP--PAIMGKDITLKGIVDPNDKRYNEAGEVRQLIETDPDVRKIFETA 529

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + LEG+ R A  HA  +++   PL + +PM++  +    +T +     E  GL+K DFLG
Sbjct: 530  RGLEGVVRQAGVHACAVIMACVPLMEHIPMWKRAQDGAIITGWPYPACEAIGLLKMDFLG 589

Query: 576  LKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L+ LT+L  +L+ + + RG  V L  + +D  E Y LL    TLG+FQL+  GMR+ L  
Sbjct: 590  LRNLTVLNDALENIKENRGETVVLEDLTYDAPEVYDLLGRGDTLGVFQLDGGGMRELLRR 649

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGV 688
            M+P   +DI+A ++LYRPGP+  +  + Y +RKNGK+ I  IHP L +P+   L +T G+
Sbjct: 650  MKPTGFDDIVAALALYRPGPMGMNAHMDYADRKNGKKPIEPIHPELAEPLEEILHDTYGL 709

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQ+M+I+Q ++ YS  EAD  R+AMGKK  E + KQ  +F  G   NG S+     
Sbjct: 710  IVYQEQIMKISQKVANYSAGEADTFRKAMGKKKPEVLKKQYAKFSGGMKDNGYSQDAIDA 769

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++  +  FA Y FNKSHAA Y+V+SY TA+MKT Y  E++AA +T   DN +K   +  D
Sbjct: 770  LWGTIEPFASYAFNKSHAAGYSVVSYWTAYMKTFYTQEYMAALLTSVGDNKDKSAIYLAD 829

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLED 867
             R   I+++PP VN    +F+   + + + L A++ VG      I++   +K  F S  D
Sbjct: 830  CRHLGIKVLPPDVNASLQNFQAVGDDVRFGLGAVRNVGADVVDSIVKTRKEKGDFTSFSD 889

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            +  ++++   N+RV ESL+ AGA D  G+ R  L    ++        +K       ++F
Sbjct: 890  YLDKIETLPCNKRVTESLIKAGAFDSLGHPRKGLALIHEDAVDSVISTKKAADKGQFDLF 949

Query: 928  AH----------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            A           E   F  ++  E++  ++   +   E+ +LG Y SGHPLD Y+  L
Sbjct: 950  AGLGGGDSAGGVEPSVFDVQVPDEEWDRKH---KLALEREMLGLYVSGHPLDGYEAAL 1004


>gi|282899282|ref|ZP_06307253.1| DNA polymerase III, alpha subunit [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195851|gb|EFA70777.1| DNA polymerase III, alpha subunit [Cylindrospermopsis raciborskii
           CS-505]
          Length = 893

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 308/822 (37%), Positives = 474/822 (57%), Gaps = 83/822 (10%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA--GI 67
           SFV L +HS YSLL+GA  +  ++++  A    ++A+TD   ++ A+E   K C +  G 
Sbjct: 2   SFVPLHLHSDYSLLDGASQIPELVEQAIALGMNSLALTDHGVMYGAIELI-KICRSKPGF 60

Query: 68  QPIIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
           +PIIG ++     DI+ Q+     +Q           V+L    +GY+ L++L +  +L 
Sbjct: 61  KPIIGNEMYIINGDIEKQERRARYHQ-----------VVLAKNTKGYKNLVKLTTISHLK 109

Query: 123 D-QGKQSV-RICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             QGK    R C++   L+E   EGLI+ +   +G I +A      + A K    +K++F
Sbjct: 110 GTQGKGIFSRPCINKDLLKE-HKEGLIVTSACLAGEIPQALLGGKLEKARKVATWYKEVF 168

Query: 179 GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
           G+  Y+ +Q H    DR    ++V++A   ++  +ATN+S ++S  D EAHD L+ +   
Sbjct: 169 GEDFYLEIQDHGSQEDRIVNVELVKIARELDIKFIATNDSHYISCFDVEAHDALLCIQTG 228

Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPI 291
            +++   R R +   YLK+  EM  +F D      + EA+  T E+A +      +  P 
Sbjct: 229 KLIADDKRMRYSGTEYLKSTQEMQLLFRDHLTDDVIAEAIATTTEVAEKVEVYNIMDEPK 288

Query: 292 LPR--FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNV 347
           +P          D   EE       A  GL  RL +    K  +  D  Y++RL++EL +
Sbjct: 289 IPAPPIPTGHTPDTYTEE------VAWQGLLKRLNR----KSRNEVDTVYKERLEYELKM 338

Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
           I +M FS YFL+V D+I++A+ +NIPVGPGRGS AGS+ AYA+ IT+IDP+   LLFERF
Sbjct: 339 IEQMGFSSYFLVVWDYIKFARDHNIPVGPGRGSAAGSLVAYAMGITNIDPVHHGLLFERF 398

Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
           LNP+R SMPD D DFC ++RD+VI YV  KYG ++VAQIITF  L +KA L+DV R L +
Sbjct: 399 LNPERKSMPDIDTDFCIEKRDQVISYVTEKYGVDKVAQIITFNRLTSKAVLKDVARVLDI 458

Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYR 523
           PY + D++ K+IP     P  L+ +  D      F+     +  V R ++++ ++EG  +
Sbjct: 459 PYGEADKMAKMIPVVRGKPTKLKVMISDETPEPEFKAKYDKEQHVRRWIDMAMRIEGTNK 518

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
               HAAG+VI   PL ++VP+ ++    + +TQ+ M+ +E  GL+K DFLGL+ LTL+Q
Sbjct: 519 TFGVHAAGVVISSEPLDEIVPLQKNNDGSV-ITQYFMEDLESLGLLKMDFLGLRNLTLIQ 577

Query: 584 KSLDFLAQ-RGVKVD-------------------LSLIPFDDHETYHLLTTKGTLGIFQL 623
           K++D + Q RG  +D                    S +P D  + Y LL +    G+FQL
Sbjct: 578 KTIDLIEQNRGYTIDPDDITRQERKAQKILAKGEYSTLPKDVAQAYSLLESGDLEGVFQL 637

Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPM 681
           ESSGM+Q +  ++P  IEDI ++++LYRPGP+D  ++  + NRK+G+E I     ++ P+
Sbjct: 638 ESSGMKQIVRDLKPSNIEDISSILALYRPGPLDAGLIPKFINRKHGREPIDYESQILQPI 697

Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
           L ET G+++YQEQ+M+IAQ ++GYSL +AD+LRRAMGKK   EM KQ+E+FI GA+KNG+
Sbjct: 698 LNETYGIMVYQEQIMKIAQDMAGYSLGQADLLRRAMGKKKVAEMQKQQEKFIDGATKNGV 757

Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            K +A  +F  + KFA+Y            +SY+T  +   Y
Sbjct: 758 KKQVAEQLFADMLKFAEY-----------CLSYETEVLTLEY 788


>gi|309804153|ref|ZP_07698231.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
           11V1-d]
 gi|325912830|ref|ZP_08175208.1| DNA polymerase III, alpha subunit [Lactobacillus iners UPII 60-B]
 gi|308163736|gb|EFO66005.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
           11V1-d]
 gi|325477823|gb|EGC80957.1| DNA polymerase III, alpha subunit [Lactobacillus iners UPII 60-B]
          Length = 1040

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 319/906 (35%), Positives = 495/906 (54%), Gaps = 38/906 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6   LQNISSFTLLKSPISIEQLIGSAKKRGYKAIALTDINFTYGLIDFYKMAKSEGIKPLLGM 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
           QL I+      + N+ +        ++++     GYQ ++ L S + L+ + GK+ + + 
Sbjct: 66  QLRIN-----GLINENQNF-----DLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133 LSWLQE-IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRH 189
           L+ LQ+ +G   +I      S   D   F+++  +    +    K+      LY+ +   
Sbjct: 116 LNKLQKYLGNLHIITTANQHSELCD--LFYHNFDLMPDYIRKLAKILPQSSNLYLGVFAD 173

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
           +    Y  S V  L+    L LVA  +  ++   D    +VL ++  +   S KD   +T
Sbjct: 174 KSESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLQSIDDNQ--SIKDGYELT 230

Query: 250 ----PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                +HYLK + ++   ++ L   EAL NT ++    +  ++   P LP+FI+ + D  
Sbjct: 231 LKHVGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD-- 288

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                  L + A+ GL+ +  +  I        Y  RL +EL +I  M F+ YFLIV D 
Sbjct: 289 --TSYEFLHHLAMTGLQAKFNKHDIP-----AKYLNRLKYELKIIDEMGFNDYFLIVWDV 341

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           I +     I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D  
Sbjct: 342 INYCHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIP 401

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            +RR+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       ++   K IP   
Sbjct: 402 DNRRNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSK 461

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           +      A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V
Sbjct: 462 SKITLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTV 521

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            + ++    +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP 
Sbjct: 522 GL-QNGSLGIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPL 580

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
           DD  T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  
Sbjct: 581 DDPATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIR 640

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
           RKN +EK+V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   
Sbjct: 641 RKNKEEKVVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSM 700

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           EM K    F++ A + G S + A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HY
Sbjct: 701 EMKKIGVDFVNRAVQQGHSASAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHY 760

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAI 842
           P +F  A +   + + +K+ K+  D +  NI+I  P +N    +F + D   I   L +I
Sbjct: 761 PKQFYVALLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSI 820

Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            G+       IM  +  +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL
Sbjct: 821 IGLRMDFVEQIM--NLQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALL 878

Query: 903 QSLDNI 908
            S +++
Sbjct: 879 ASYEDL 884


>gi|300858796|ref|YP_003783779.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis
            FRC41]
 gi|300686250|gb|ADK29172.1| DNA polymerase III alpha subunit [Corynebacterium pseudotuberculosis
            FRC41]
 gi|302206501|gb|ADL10843.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis
            C231]
 gi|302331056|gb|ADL21250.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis
            1002]
 gi|308276743|gb|ADO26642.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis
            I19]
          Length = 1186

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 336/1020 (32%), Positives = 531/1020 (52%), Gaps = 67/1020 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  SFVHL  H+ YS+L+G   ++ + +++     PA+ +TD  N+F +  F +    
Sbjct: 1    MAKKSSFVHLHNHTEYSMLDGMAKVDMLAEEVLRQGMPAVGMTDHGNMFGSDAFYRTMKK 60

Query: 65   AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113
            AG++PIIG +  +  D + N      G+ P      +          +L   AEG + L 
Sbjct: 61   AGVKPIIGIEAYMAPDSRFNKTRVRWGE-PHQKSDDVSASGAYLHQTMLAENAEGLRNLF 119

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L S      Q  +  R+    + E  + G+I  TG  SG +           A +    
Sbjct: 120  YLSSMASYEGQLGKWPRMDADLIAEHAS-GIIATTGCPSGDVQTRLRLGQFDQALEAAAM 178

Query: 174  FKKLFG-DRLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++ ++G +  ++ L  H     +R R S+++++    +LP + TN+  ++ E    AH+ 
Sbjct: 179  WQDIYGKENYFLELMDHGLEIENRVR-SELLEIGRKLDLPPLVTNDCHYVLESQAPAHEA 237

Query: 231  LMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVH 288
            ++ V     +S  DR +     +Y+K   +M  ++  L PEA +NT+ IA R    +Q +
Sbjct: 238  MLCVQTGKTLSDPDRFKFDGSGYYIKTAEQMREMWDSLVPEACDNTLWIAER----VQDY 293

Query: 289  APILPRFIEKECDDIQKEEENE----LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
              I               E +     LR++ + GL VR   G +      Q Y  R ++E
Sbjct: 294  GEIWEEHTHDRMPIADVPEGHTPTSWLRHEVLEGLRVRFNGGEVP-----QSYIDRAEYE 348

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            ++VI    +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLF
Sbjct: 349  ISVIDMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHDLLF 408

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K A++D  R 
Sbjct: 409  ERFLNPERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQAIKDSARV 468

Query: 465  L--QMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVD 509
               Q  Y   DR+ K +P              DP HP   +A       R     DP V 
Sbjct: 469  QYGQPGYQIADRITKELPPAIMAKDIPLSGIMDPEHPRYGEA----GEVRNLIETDPDVK 524

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            ++ + ++ LEG+ R A  HA  +++   PL + +PM++       +T +     E  GL+
Sbjct: 525  KIYDTARGLEGVVRQAGVHACAVIMASVPLLEHIPMWKRAADGALITGWPYPACEAIGLL 584

Query: 570  KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGL+ LT++   ++ +   R   VDL  +  DD + Y LL++  TLG+FQL+S GM
Sbjct: 585  KMDFLGLRNLTVIGDCIENIKINRKETVDLEELTTDDPKVYELLSSGDTLGVFQLDSGGM 644

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLID----PML 682
            ++ L+ MQP    DI+A ++LYRPGP  ++    Y +RKNG++ I  IHP +D     +L
Sbjct: 645  QELLKRMQPTGFHDIVASLALYRPGPMGVNAHWDYADRKNGRKPIEPIHPELDEPLREIL 704

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
             ET G+I+YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + KQ ++F+ G   NG S
Sbjct: 705  DETYGLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKQPEVLAKQYDKFLEGMLSNGYS 764

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
            K     ++  +  FA Y FNKSHAA Y ++SY TA++K +Y  E++AA +T   D  +K 
Sbjct: 765  KGAVDALWGTIEPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVADKKDKS 824

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-P 861
              +  + R   I ++ P VN   ++F    N I + L A++ VG      I++A  +K  
Sbjct: 825  AIYLSNCRHLGISVLSPDVNESRLNFLPVGNDIRFGLGAVRNVGEDVVNSIVKARQEKGG 884

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F    D+  ++D+   N+RV ESL+ AGA D  G+ R  LL   ++        +K    
Sbjct: 885  FSDFSDYLDKIDTVACNKRVTESLIKAGAFDSLGHPRKGLLLIHEDAVDSVISTKKAADK 944

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPIL 975
               ++FA   G   D      F+V+    +++       E+ +LG Y SGHPLD Y+  L
Sbjct: 945  GQFDLFAGFGG--DDASMGNAFAVQIPEAQWDRKHQLALEREMLGLYVSGHPLDGYEEAL 1002


>gi|312871433|ref|ZP_07731528.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF
           3008A-a]
 gi|311093086|gb|EFQ51435.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF
           3008A-a]
          Length = 1040

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 318/901 (35%), Positives = 491/901 (54%), Gaps = 36/901 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6   LQNISSFTLLKSPISIEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
           QL I+      + N+ +        ++++     GYQ ++ L S + L+ + GK+ + + 
Sbjct: 66  QLRIN-----GLINENQNF-----DLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRHR 190
           L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
               Y  S V  L+    L LVA  +  ++   D    +VL ++  +   S +D   +T 
Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLQSIDDNQ--SIRDGYELTL 231

Query: 250 ---PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               +HYLK + ++   ++ L   EAL NT ++    +  ++   P LP+FI+ + D   
Sbjct: 232 KHVGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD--- 288

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                 L + A+ GL+ +  +  I        Y  RL +EL +I  M F+ YFLIV D I
Sbjct: 289 -TSYEFLHHLAMTGLQAKFNKHDIP-----AKYLNRLKYELKIIDEMGFNDYFLIVWDVI 342

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +     I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   
Sbjct: 343 NYCHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARQQMPDIDLDIPD 402

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           +RR+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       ++   K IP   +
Sbjct: 403 NRRNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKS 462

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V 
Sbjct: 463 KITLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVG 522

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
           + ++    +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP D
Sbjct: 523 L-QNGSLGIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLD 581

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D  T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  R
Sbjct: 582 DPATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRR 641

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           KN +EK+V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   E
Sbjct: 642 KNKEEKVVYPDPVLINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSIE 701

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M K    F++ A K G S + A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP
Sbjct: 702 MKKIGVDFVNRAVKQGHSASAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYP 761

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
            +F  A +   + + +K+ K+  D +  NI+I  P +N    +F + D   I   L +I 
Sbjct: 762 KQFYVALLNSNIYDKQKVTKYIMDLKLDNIKITLPDINYSKRNFYISDKGEIVTGLNSIL 821

Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
           G+       IM  +  +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL 
Sbjct: 822 GLRMDFVEQIM--NLQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLA 879

Query: 904 S 904
           S
Sbjct: 880 S 880


>gi|312872348|ref|ZP_07732418.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF
           2062A-h1]
 gi|312875479|ref|ZP_07735482.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF
           2053A-b]
 gi|325911984|ref|ZP_08174386.1| DNA polymerase III, alpha subunit [Lactobacillus iners UPII 143-D]
 gi|311088990|gb|EFQ47431.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF
           2053A-b]
 gi|311092171|gb|EFQ50545.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF
           2062A-h1]
 gi|325476169|gb|EGC79333.1| DNA polymerase III, alpha subunit [Lactobacillus iners UPII 143-D]
          Length = 1040

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 317/905 (35%), Positives = 493/905 (54%), Gaps = 36/905 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6   LQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
           QL I+      + N+ +        ++++     GYQ ++ L S + L+ + GK+ + + 
Sbjct: 66  QLRIN-----GLINENQNF-----DLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRHR 190
           L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
               Y  S V  L+    L LVA  +  ++   D    +VL ++  +   S +D   +T 
Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLKSIDDNQ--SIRDGYELTL 231

Query: 250 ---PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               +HYLK + ++   ++ L   EAL NT ++    +  ++   P LP+FI+ + D   
Sbjct: 232 KHVGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD--- 288

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                 L + A+ GL+ +  +  I        Y  RL +EL +I  M F+ YFLIV D I
Sbjct: 289 -TSYEFLHHLAMTGLQAKFNKHDIP-----AKYLNRLKYELKIIDEMGFNDYFLIVWDVI 342

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +     I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   
Sbjct: 343 NYCHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPD 402

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           +RR+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       ++   K IP   +
Sbjct: 403 NRRNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKS 462

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V 
Sbjct: 463 KITLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVG 522

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
           + ++    +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP D
Sbjct: 523 L-QNGSLGIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLD 581

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D  T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  R
Sbjct: 582 DPATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRR 641

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           KN +EK+V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   E
Sbjct: 642 KNKEEKVVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSME 701

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M K    F++ A + G S   A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP
Sbjct: 702 MKKIGVDFVNRAVQQGHSAAAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYP 761

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
            +F  A +   + + +K+ K+  D +  NI+I  P +N    +F + D   I   L +I 
Sbjct: 762 KQFYVALLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSII 821

Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
           G+       IM  +  +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL 
Sbjct: 822 GLRMDFVEQIM--NLQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLA 879

Query: 904 SLDNI 908
           S +++
Sbjct: 880 SYEDL 884


>gi|329921313|ref|ZP_08277751.1| DNA polymerase III, alpha subunit [Lactobacillus iners SPIN 1401G]
 gi|328934605|gb|EGG31109.1| DNA polymerase III, alpha subunit [Lactobacillus iners SPIN 1401G]
          Length = 1040

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 316/905 (34%), Positives = 493/905 (54%), Gaps = 36/905 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6   LQNISSFTLLKSPISIEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
           QL I+      + N+ +        ++++     GYQ ++ L S + L+ + GK+ + + 
Sbjct: 66  QLRIN-----GLINENQNF-----DLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRHR 190
           L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
               Y  S V  L+    L LVA  +  ++   D    +VL ++  +   S +D   +T 
Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDVFLQEVLQSIDDNQ--SIRDGYELTL 231

Query: 250 ---PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               +HYLK + ++   ++ L   EAL NT ++    +  ++   P LP+FI+ + D   
Sbjct: 232 KHVGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD--- 288

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                 L + A+ GL+ +  +  I        Y  RL +EL +I  M F+ YFLIV D I
Sbjct: 289 -TSYEFLHHLAMTGLQAKFNKHDIP-----AKYLNRLKYELKIIDEMGFNDYFLIVWDVI 342

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +     I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   
Sbjct: 343 NYCHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPD 402

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           +RR+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       ++   K IP   +
Sbjct: 403 NRRNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKS 462

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V 
Sbjct: 463 KITLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVG 522

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
           + ++    +PVTQ   K++E  GL+K DFLGL  LT+L  + + +   G+K+D+  IP D
Sbjct: 523 L-QNGSLGIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNAFNEVKMSGIKLDMDKIPLD 581

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D  T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  R
Sbjct: 582 DPATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRR 641

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           KN +EK+V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   E
Sbjct: 642 KNKEEKVVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSME 701

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M K    F++ A + G S + A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP
Sbjct: 702 MKKIGVDFVNRAVQQGHSASAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYP 761

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
            +F  A +   + + +K+ K+  D +  NI+I  P +N    +F + D   I   L +I 
Sbjct: 762 KQFYVALLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSII 821

Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
           G+       IM  +  +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL 
Sbjct: 822 GLRMDFVEQIM--NLQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLA 879

Query: 904 SLDNI 908
           S +++
Sbjct: 880 SYEDL 884


>gi|283470969|emb|CAQ50180.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            ST398]
          Length = 1065

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 288/772 (37%), Positives = 442/772 (57%), Gaps = 40/772 (5%)

Query: 268  PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
            PE       IA++C   L+ H  +LP++ +   D+  K+    +    +  LE+      
Sbjct: 210  PEYFTQADRIAQKCDAELKYHQSLLPQY-QAPNDESAKKYLWRVLVTQLKKLEL------ 262

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                 +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ VGPGRGS AGS+ +
Sbjct: 263  -----NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVS 317

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++VI+YVQ KYG   V+ I+
Sbjct: 318  YLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVIQYVQEKYGELHVSGIV 377

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            TFG L A+A  RDVGR +      ++ +  LIP+     ++L        F++    +  
Sbjct: 378  TFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEAYQIDDFKKFVHRNHR 435

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
             +R   I +KLEGL RH STHAAGI+I D PL +  P+ +     L  TQ+ M   E+ G
Sbjct: 436  HERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLL--TQWTMTEAERIG 493

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL+   T GIFQLES 
Sbjct: 494  LLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESD 553

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+  +HP ++P+LK T 
Sbjct: 554  GVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTY 613

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ FI GA +NG  + I+
Sbjct: 614  GVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGAKQNGYHEDIS 673

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  ++  + + +K  +  
Sbjct: 674  KQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMI 733

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865
            ++A++  I I+PP++N     +K     IY S+  IKGVG  + + I+E    +  F   
Sbjct: 734  EEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKVIVEERYQNGKFKDF 793

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D        V     N  ++
Sbjct: 794  FDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ-------VLDGDLNIEQD 846

Query: 926  IFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
             F  +    K  + DK  L    +       + E+  LGFY S HP+D  K  + K  + 
Sbjct: 847  GFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQHPVD--KKFVAKQYLT 898

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++ S A    NN  +       +Q +T+ G  + +VT ++  +  +   FP
Sbjct: 899  IFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFP 947



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4  YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIFG 63

Query: 73 CQL 75
            +
Sbjct: 64 MTI 66


>gi|116629535|ref|YP_814707.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri ATCC 33323]
 gi|238852685|ref|ZP_04643095.1| DNA polymerase III subunit alpha [Lactobacillus gasseri 202-4]
 gi|311110823|ref|ZP_07712220.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri MV-22]
 gi|116095117|gb|ABJ60269.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus
            gasseri ATCC 33323]
 gi|238834831|gb|EEQ27058.1| DNA polymerase III subunit alpha [Lactobacillus gasseri 202-4]
 gi|311065977|gb|EFQ46317.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri MV-22]
          Length = 1038

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 334/1031 (32%), Positives = 541/1031 (52%), Gaps = 51/1031 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQ  SS++LLE    + ++ +        A+A+TD N  +  + F + A   GI+P++
Sbjct: 4    VSLQNLSSFTLLESPTKVKDLAENAKKKGYSALALTDVNITYGLVNFYKAAKETGIKPLL 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVR 130
            G QL I+          G         ++++    +GY+ ++ L S + LL + G++   
Sbjct: 64   GMQLRIN----------GLIDQANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENV 113

Query: 131  ICLSWLQE-IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQ 187
            + L  L++ +G   L+++T  +     +    N+  +     R+L         +Y+ + 
Sbjct: 114  LELEELKKYLGH--LVIITPSNLHSELKMLQTNNPNMGANYVRILKDAVPTSSLVYLGVY 171

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
              +G   Y  + +  LA   EL L A  +  +L+  +      L A+  +T +   ++  
Sbjct: 172  ADQGQQEYI-NYLRSLATQFELSLAAVEDGQYLNRNEQFLRRTLQAIKSNTHLENVEQLA 230

Query: 247  RVTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            +    HYLK   E+   +   ++ +ALEN  +I + C+  +    P LP+F + +     
Sbjct: 231  KQAGSHYLKTSEELQVNYRKFEIEDALENAEKIGQLCNAKITFQDPQLPKFKQNKF---- 286

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L + A  GL  R       KG   + Y++RLD+EL VI  M F  YFLIV D +
Sbjct: 287  PTSKEYLHSLAQNGLAKRF------KGQIPERYQKRLDYELKVINEMGFDDYFLIVWDVM 340

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A   +I  GPGRGS AGS+ +YAL IT++DPL ++LLFERFLNP R  MPD D+D   
Sbjct: 341  NFAHSVHITTGPGRGSAAGSLVSYALRITEVDPLEYNLLFERFLNPARQQMPDIDLDIPD 400

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDEVI+Y+  KYG    AQI+TFG+L AK  L+DV R   +   +  R    IP+   
Sbjct: 401  NRRDEVIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHAKG 460

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 +A       +     +     L   ++ LE L RH S HAAG+VI D  L+++V 
Sbjct: 461  KITLAEAYQKSKELQLLVNTNTFSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVG 520

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +       +PVTQ     +E  GL+K DFLGL+ LT+L   +  L   GV++D + IP +
Sbjct: 521  LQAGPLG-IPVTQQTKLNVESLGLLKIDFLGLRNLTILGNIIAALKSEGVEIDPNQIPLN 579

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D ET  L     T  +FQ ES G+++ LE + PD  EDI+A+ +LYRPGP++NI  + NR
Sbjct: 580  DQETLALFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPMNNIGHFINR 639

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GKE++    P +  +L  T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK  + 
Sbjct: 640  KHGKERVQYPDPSLKKILGPTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNADV 699

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + K++E+FI GA K G  K +A  +++ +A+FA+YGFN+SHA AY+ I++  A+ K HYP
Sbjct: 700  IQKEREKFIQGAVKLGRRKEVAEQVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYP 759

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
              F  + +   + N  KI ++   A++  I+ +PP +     DF + + +I   L AI+G
Sbjct: 760  GAFYLSLLNSNIGNRNKIAQYLMQAQEAGIKTLPPDIENSQADFSLENGKILVGLKAIRG 819

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            + +   + I+E    +P  S+ DF  ++D+  L+   + +L+ AGA D    +R +LL+ 
Sbjct: 820  LRSDLLKQILEIK--RPIKSMTDFLWKIDNNLLSADAIANLIKAGAFDRLAPNRNELLKI 877

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF--SVENSSVRFENEQRVLGFY 962
              ++ +  +    N +     +F     T   KI  EK   + E S++  E     +GF 
Sbjct: 878  NKDLVESVKMAGSNLS-----LFE----TLEPKIEEEKMPTAAEKSAMEVE----AMGFS 924

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
               +P+   +   RK   K  +   +  +G  I +  ++  K Q  T+KG  + +  FS+
Sbjct: 925  TGINPIIAVQKYARKYNAKRLQAFESNEQG--IAVGKLMRIK-QITTKKGDNMAFAVFSD 981

Query: 1023 PAKEYEANFFP 1033
             + + +   FP
Sbjct: 982  SSGDKDFTIFP 992


>gi|312873990|ref|ZP_07734026.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF
           2052A-d]
 gi|311090539|gb|EFQ48947.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF
           2052A-d]
          Length = 1040

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 317/905 (35%), Positives = 492/905 (54%), Gaps = 36/905 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6   LQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
           QL I+      + N+ +        ++++     GYQ ++ L S + L+ + GK+ + + 
Sbjct: 66  QLRIN-----GLINENQNF-----DLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRHR 190
           L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLVKILPQSSNLYLGVFADK 174

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
               Y  S V  L+    L LVA  +  ++   D    +VL ++  +   S +D   +T 
Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLKSIDDNQ--SIRDGYELTL 231

Query: 250 ---PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               +HYLK + ++   ++ L   EAL NT ++    +  ++   P LP+FI+ + D   
Sbjct: 232 KHVGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD--- 288

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                 L + A+ GL+ +  +  I        Y  RL +EL +I  M F+ YFLIV D I
Sbjct: 289 -TSYEFLHHLAMTGLQAKFNKHDIP-----AKYLNRLKYELKIIDEMGFNDYFLIVWDVI 342

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +     I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   
Sbjct: 343 NYCHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPD 402

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           +RR+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       +D   K IP   +
Sbjct: 403 NRRNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITIDSWLKAIPKSKS 462

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 A      F     A  S     E+++K+EGL RH S HAAG+VI D  +++ V 
Sbjct: 463 KITLSDAYKLSKDFWMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVG 522

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
           + ++    +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP D
Sbjct: 523 L-QNGSLGIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLD 581

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D  T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  R
Sbjct: 582 DPATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRR 641

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           KN +EK+V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   E
Sbjct: 642 KNKEEKVVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSME 701

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M K    F++ A + G S   A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP
Sbjct: 702 MKKIGVDFVNRAVQQGHSAAAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYP 761

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
            +F  A +   + + +K+ K+  D +  NI+I  P +N    +F + D   I   L +I 
Sbjct: 762 KQFYVALLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSII 821

Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
           G+       IM  +  +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL 
Sbjct: 822 GLRMDFVEQIM--NLQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLA 879

Query: 904 SLDNI 908
           S +++
Sbjct: 880 SYEDL 884


>gi|297590764|ref|ZP_06949402.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus MN8]
 gi|297575650|gb|EFH94366.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus MN8]
          Length = 1065

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 287/772 (37%), Positives = 442/772 (57%), Gaps = 40/772 (5%)

Query: 268  PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
            PE       IA++C+  L+ H  +LP++ +   D+  K+    +    +  LE+      
Sbjct: 210  PEYFTQADRIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVLVTQLKKLEL------ 262

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                 +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ VGPGRGS AGS+ +
Sbjct: 263  -----NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVS 317

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++VI+YVQ KYG   V+ I+
Sbjct: 318  YLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVIQYVQEKYGELHVSGIV 377

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            TFG L A+A  RDVGR +      ++ +  LIP+     ++L        F++    +  
Sbjct: 378  TFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEAYQIDDFKKFVHRNHR 435

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
             +R   I +KLEGL RH STHAAGI+I D PL +  P+ +     L  TQ+ M   E+ G
Sbjct: 436  HERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLL--TQWTMTEAERIG 493

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL+   T GIFQLES 
Sbjct: 494  LLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESD 553

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+  +HP ++P+LK T 
Sbjct: 554  GVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTY 613

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ FI G  +NG  + I+
Sbjct: 614  GVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGTKQNGYHEDIS 673

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  ++  + + +K  +  
Sbjct: 674  KQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMI 733

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865
            ++A++  I I+PP++N     +K     IY S+  IKGVG  + + I+E    +  F   
Sbjct: 734  EEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKVIVEERYQNGKFKDF 793

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D        V     N  ++
Sbjct: 794  FDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ-------VLDGDLNIEQD 846

Query: 926  IFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
             F  +    K  + DK  L    +       + E+  LGFY S HP+D  K  + K  + 
Sbjct: 847  GFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQHPVD--KKFVAKQYLT 898

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++ S A    NN  +       +Q +T+ G  + +VT ++  +  +   FP
Sbjct: 899  IFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFP 947



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4  YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIFG 63

Query: 73 CQL 75
            +
Sbjct: 64 MTI 66


>gi|315653496|ref|ZP_07906417.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus iners
           ATCC 55195]
 gi|315489187|gb|EFU78828.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus iners
           ATCC 55195]
          Length = 1040

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 316/905 (34%), Positives = 492/905 (54%), Gaps = 36/905 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6   LQNISSFTLLKSPISIEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
           QL I+      + N+ +        ++++     GYQ ++ L S + L+ + GK+ + + 
Sbjct: 66  QLRIN-----GLINENQNF-----DLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRHR 190
           L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
               Y  S V  L+    L LVA  +  ++   D    +VL ++  +   S +D   +T 
Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLQSIDDNQ--SIRDGYELTL 231

Query: 250 ---PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               +HYLK + ++   ++ L   EAL NT ++    +  ++   P LP+FI+ + D   
Sbjct: 232 KHVGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD--- 288

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                 L + A+ GL+ +  +  I        Y  RL +EL +I  M F+ YFLIV D I
Sbjct: 289 -TSYEFLHHLAMTGLQAKFNKHDIP-----AKYLNRLKYELKIIDEMGFNDYFLIVWDVI 342

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +     I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   
Sbjct: 343 NYCHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPD 402

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           +RR+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       ++     IP   +
Sbjct: 403 NRRNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQNAIPKSKS 462

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V 
Sbjct: 463 KITLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVG 522

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
           + ++    +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP D
Sbjct: 523 L-QNGSLGIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLD 581

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D  T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  R
Sbjct: 582 DPATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRR 641

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           KN +EK+V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   E
Sbjct: 642 KNREEKVVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSME 701

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M K    F++ A + G S   A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP
Sbjct: 702 MKKIGVDFVNRAVQQGHSAVAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYP 761

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
            +F  A +   + + +K+ K+  D +  NI+I  P +N    +F + D   I   L +I 
Sbjct: 762 KQFYVALLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSII 821

Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
           G+       IM  +  +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL 
Sbjct: 822 GLRMDFVEQIM--NLQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLA 879

Query: 904 SLDNI 908
           S +++
Sbjct: 880 SYEDL 884


>gi|309809270|ref|ZP_07703139.1| DNA polymerase III, alpha subunit [Lactobacillus iners SPIN
           2503V10-D]
 gi|308170383|gb|EFO72407.1| DNA polymerase III, alpha subunit [Lactobacillus iners SPIN
           2503V10-D]
          Length = 1040

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 317/901 (35%), Positives = 489/901 (54%), Gaps = 36/901 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6   LQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
           QL I+      + N+ +        ++++     GYQ ++ L S + L+ + GK+ + + 
Sbjct: 66  QLRIN-----GLINENQNF-----DLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRHR 190
           L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLVKILPQSSNLYLGVFADK 174

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
               Y  S V  L+    L LVA  +  ++   D    +VL ++  +   S +D   +T 
Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLKSIDDNQ--SIRDGYELTL 231

Query: 250 ---PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               +HYLK + ++   ++ L   EAL NT +++   +  ++   P LP+FI+ + D   
Sbjct: 232 KHVGNHYLKTKDKLCESYNSLGILEALRNTKQVSDDSNIEIKFTMPQLPKFIQHKFD--- 288

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                 L + A+ GL+ +  +  I        Y  RL +EL +I  M F+ YFLIV D I
Sbjct: 289 -TSYEFLHHLAMTGLQAKFNKHDIP-----SKYLNRLKYELKIIDEMGFNDYFLIVWDVI 342

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +     I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   
Sbjct: 343 NYCHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPD 402

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           +RR+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       +D   K IP   +
Sbjct: 403 NRRNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITIDSWLKAIPKSKS 462

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V 
Sbjct: 463 KITLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVG 522

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
           + ++    +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP D
Sbjct: 523 L-QNGSLGIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLD 581

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D  T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  R
Sbjct: 582 DPATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRR 641

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           KN +E +V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   E
Sbjct: 642 KNKEENVVYPDPVLINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSIE 701

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M K    F++ A + G S   A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP
Sbjct: 702 MKKIGVDFVNRAVQQGHSAAAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYP 761

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
            +F  A +   + + +K+ K+  D +  NI+I  P +N    +F + D   I   L +I 
Sbjct: 762 KQFYVALLNSNIYDKQKVTKYIMDLKLDNIKITLPDINYSKRNFYISDKGEIVTGLNSIL 821

Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
           G+       IM  +  +P  SL DF  ++D+K L   ++ +L+ +GA D    +R  LL 
Sbjct: 822 GLRMDFVEQIM--NLQRPIKSLTDFLWKIDTKYLLPDMIGNLIKSGAFDKLHKNRSALLA 879

Query: 904 S 904
           S
Sbjct: 880 S 880


>gi|49483944|ref|YP_041168.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            MRSA252]
 gi|282906098|ref|ZP_06313953.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            Btn1260]
 gi|282909013|ref|ZP_06316831.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            WW2703/97]
 gi|282911329|ref|ZP_06319131.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            WBG10049]
 gi|283958453|ref|ZP_06375904.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus A017934/97]
 gi|295428273|ref|ZP_06820902.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            EMRSA16]
 gi|60392207|sp|Q6GG04|DPO3A_STAAR RecName: Full=DNA polymerase III subunit alpha
 gi|49242073|emb|CAG40772.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            MRSA252]
 gi|282325024|gb|EFB55334.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            WBG10049]
 gi|282327277|gb|EFB57572.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            WW2703/97]
 gi|282331390|gb|EFB60904.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            Btn1260]
 gi|283790602|gb|EFC29419.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus A017934/97]
 gi|295127673|gb|EFG57310.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            EMRSA16]
 gi|312437840|gb|ADQ76911.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus TCH60]
 gi|315195607|gb|EFU25994.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            CGS00]
          Length = 1065

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 287/772 (37%), Positives = 442/772 (57%), Gaps = 40/772 (5%)

Query: 268  PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
            PE       IA++C+  L+ H  +LP++ +   D+  K+    +    +  LE+      
Sbjct: 210  PEYFTQADRIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVLVTQLKKLEL------ 262

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                 +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ VGPGRGS AGS+ +
Sbjct: 263  -----NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVS 317

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++VI+YVQ KYG   V+ I+
Sbjct: 318  YLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVIQYVQEKYGELHVSGIV 377

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            TFG L A+A  RDVGR +      ++ +  LIP+     ++L        F++    +  
Sbjct: 378  TFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEAYQIDDFKKFVHRNHR 435

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
             +R   I +KLEGL RH STHAAGI+I D PL +  P+ +     L  TQ+ M   E+ G
Sbjct: 436  HERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLL--TQWTMTEAERIG 493

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL+   T GIFQLES 
Sbjct: 494  LLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESD 553

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+  +HP ++P+LK T 
Sbjct: 554  GVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTY 613

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ FI G  +NG  + I+
Sbjct: 614  GVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGTKQNGYHEDIS 673

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  ++  + + +K  +  
Sbjct: 674  KQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMI 733

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865
            ++A++  I I+PP++N     +K     IY S+  IKGVG  + + I+E    +  F   
Sbjct: 734  EEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKVIVEERYQNGKFKDF 793

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D        V     N  ++
Sbjct: 794  FDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ-------VLDGDLNIEQD 846

Query: 926  IFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
             F  +    K  + DK  L    +       + E+  LGFY S HP+D  K  + K  + 
Sbjct: 847  GFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQHPVD--KKFVAKQYLT 898

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++ S A    NN  +       +Q +T+ G  + +VT ++  +  +   FP
Sbjct: 899  IFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFP 947



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4  YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIFG 63

Query: 73 CQL 75
            +
Sbjct: 64 MTI 66


>gi|282919466|ref|ZP_06327201.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            C427]
 gi|282317276|gb|EFB47650.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            C427]
          Length = 1065

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 287/772 (37%), Positives = 442/772 (57%), Gaps = 40/772 (5%)

Query: 268  PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
            PE       IA++C+  L+ H  +LP++ +   D+  K+    +    +  LE+      
Sbjct: 210  PEYFTQADRIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVLVTQLKKLEL------ 262

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                 +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ VGPGRGS AGS+ +
Sbjct: 263  -----NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVS 317

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++VI+YVQ KYG   V+ I+
Sbjct: 318  YLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVIQYVQEKYGELHVSGIV 377

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            TFG L A+A  RDVGR +      ++ +  LIP+     ++L        F++    +  
Sbjct: 378  TFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEAYQIDDFKKFVHRNHR 435

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
             +R   I +KLEGL RH STHAAGI+I D PL +  P+ +     L  TQ+ M   E+ G
Sbjct: 436  HERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLL--TQWTMTEAERIG 493

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL+   T GIFQLES 
Sbjct: 494  LLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESD 553

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+  +HP ++P+LK T 
Sbjct: 554  GVRSVLKKLKPEHYEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTY 613

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ FI G  +NG  + I+
Sbjct: 614  GVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGTKQNGYHEDIS 673

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  ++  + + +K  +  
Sbjct: 674  KQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMI 733

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865
            ++A++  I I+PP++N     +K     IY S+  IKGVG  + + I+E    +  F   
Sbjct: 734  EEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKVIVEERYQNGKFKDF 793

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D        V     N  ++
Sbjct: 794  FDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ-------VLDGDLNIEQD 846

Query: 926  IFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
             F  +    K  + DK  L    +       + E+  LGFY S HP+D  K  + K  + 
Sbjct: 847  GFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQHPVD--KKFVAKQYLT 898

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++ S A    NN  +       +Q +T+ G  + +VT ++  +  +   FP
Sbjct: 899  IFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFP 947



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4  YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIFG 63

Query: 73 CQL 75
            +
Sbjct: 64 MTI 66


>gi|222151616|ref|YP_002560772.1| DNA polymerase III alpha chain [Macrococcus caseolyticus JCSC5402]
 gi|222120741|dbj|BAH18076.1| DNA polymerase III alpha chain [Macrococcus caseolyticus JCSC5402]
          Length = 1051

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 333/966 (34%), Positives = 521/966 (53%), Gaps = 92/966 (9%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           VHL VHS+Y LL   + ++ ++ ++   ++ A+A+TD N LF    F +   AA I+PII
Sbjct: 6   VHLNVHSAYDLLHSTVEIDALVTRVTELKEHAVALTDFNVLFGVQSFYKACIAADIKPII 65

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G  ++I + D LK               V L     GY  LI+L SR+ L     + V +
Sbjct: 66  G--MEICVTDGLKQLRA-----------VCLARNNTGYVNLIKLSSRIQL-----KGVEL 107

Query: 132 C-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
             L WL +  +  +++    +           S  +     L  KK++  D LY+     
Sbjct: 108 TPLKWLSQYQSGIIVIFKSITESESHFTQGIESYYICHNSSLDAKKVYIEDVLYL----- 162

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                  ES  VQ  +   L  +  N  L L          ++ +   T           
Sbjct: 163 -------ESSGVQ--HLEVLNAIEENKKLPLE---------MVRIKAGTA---------- 194

Query: 250 PDHYLKNRSEMVSIFSDLP-EALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQKEE 307
              Y+K+  +++ +   +P E L+ T EIA +C+  +  H   +P+F +E    D    +
Sbjct: 195 ---YMKDDVQLIDL--KIPQEYLDRTHEIADQCNVDITKHHATMPKFPVEGYSSDAYLMK 249

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + + + +   + R              Y QRL +E +VI +M ++ YFLIV D IQ+A
Sbjct: 250 LLQEKKREIPHFDER--------------YEQRLRYEYDVITQMGYADYFLIVGDLIQYA 295

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           K+++I VGPGRGS  GS+ +Y L IT++DP++++LLFERFLNP+R++MPD DIDF   +R
Sbjct: 296 KEHDILVGPGRGSSGGSLISYVLGITEVDPVQYNLLFERFLNPERVTMPDIDIDFEDTKR 355

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           D+VI+Y  +KYG   V+ I+TFG L A+A +RD GR LQ   +++ ++  LIP      +
Sbjct: 356 DQVIQYAVDKYGKYNVSGIVTFGHLNARAVMRDTGRILQFSDAELKKISTLIPKRVG--I 413

Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
           +L  +  D  F      D    +  +I+  LEGL R+ STHAAG++I D+ L+  VP+  
Sbjct: 414 TLDDMKMDEDFMRFINEDDRRKQWFDIAYALEGLPRNTSTHAAGVIIHDQLLTDYVPI-- 471

Query: 548 DVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
            +  D + +TQ+ M  +E  GL+K DFLGL+ L++++  +D +  Q   ++DL+ +P DD
Sbjct: 472 -IEGDSVSLTQWTMTEVESIGLLKIDFLGLRNLSIIRNVMDQVRIQFNQQLDLNTLPLDD 530

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
            + Y LL    T GIFQLES G+R  L  ++P    DI+A+++LYRPGP++ I VY  R+
Sbjct: 531 PKVYTLLAQGDTTGIFQLESEGIRNVLRNLKPSHFNDIVAVLALYRPGPMEQIPVYIERR 590

Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
           +G + +  IH  +  +LK+T GVIIYQEQ+MQIA   +G+S  EAD+LRRAM KK    +
Sbjct: 591 HGAQSVDYIHDDLKAILKDTFGVIIYQEQIMQIANQFAGFSYGEADILRRAMSKKDMSVL 650

Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             +KE FI G+   G  K  A  I+EL+ KFA+YGF K+HA AYA I+Y   ++K HYP 
Sbjct: 651 LTEKEHFILGSVNKGYDKQTAEAIYELILKFANYGFPKAHAVAYAKIAYYMLYLKVHYPN 710

Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            F  A ++ ++ +  K K+   + ++  I I    +N     ++   + I  +L  IKG+
Sbjct: 711 IFYTAILSNQIGSEHKTKEIIDEVKKRGIPIYAADINKAHWYYRTYKDGILNALGVIKGL 770

Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
           G  + + I++A     F  + DFC+R+ S+  ++ +LE+L+ AG  D FG++R  LL SL
Sbjct: 771 GYKSVQDIIDARKQGSFKDIYDFCARIPSRIASKPLLEALIHAGCFDSFGHTRATLLASL 830

Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKG--TFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
           D I      ++  RTN+ E  F    G     D I  E+ S      + E E+  LGFY 
Sbjct: 831 DMI------IDVERTNEGEESFLESLGLNKKKDYIIHEEMS---DMKKAEYEKAYLGFYL 881

Query: 964 SGHPLD 969
           + HP++
Sbjct: 882 TNHPVE 887


>gi|257425817|ref|ZP_05602241.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            55/2053]
 gi|257428483|ref|ZP_05604881.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            65-1322]
 gi|257431117|ref|ZP_05607494.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            68-397]
 gi|257433799|ref|ZP_05610157.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            E1410]
 gi|257436716|ref|ZP_05612760.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            M876]
 gi|282914498|ref|ZP_06322284.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus M899]
 gi|282924844|ref|ZP_06332510.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            C101]
 gi|293503576|ref|ZP_06667423.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            58-424]
 gi|293510591|ref|ZP_06669296.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            M809]
 gi|293537133|ref|ZP_06671813.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus M1015]
 gi|257271511|gb|EEV03657.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            55/2053]
 gi|257275324|gb|EEV06811.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            65-1322]
 gi|257278065|gb|EEV08713.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            68-397]
 gi|257281892|gb|EEV12029.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            E1410]
 gi|257284067|gb|EEV14190.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            M876]
 gi|282313210|gb|EFB43606.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            C101]
 gi|282321679|gb|EFB52004.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus M899]
 gi|290919978|gb|EFD97046.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus M1015]
 gi|291095242|gb|EFE25507.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            58-424]
 gi|291466482|gb|EFF09003.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            M809]
          Length = 1065

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/772 (37%), Positives = 441/772 (57%), Gaps = 40/772 (5%)

Query: 268  PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
            PE       IA++C+  L+ H  +LP++ +   D+  K+    +    +  LE+      
Sbjct: 210  PEYFTQADRIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVLVTQLKKLEL------ 262

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                 +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ VGPGRGS AGS+ +
Sbjct: 263  -----NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVS 317

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            Y L IT IDP++F+LLFERFLNP+R++MPD DIDF    R++VI+YVQ KYG   V+ I+
Sbjct: 318  YLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTHREKVIQYVQEKYGELHVSGIV 377

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            TFG L A+A  RDVGR +      ++ +  LIP+     ++L        F++    +  
Sbjct: 378  TFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEAYQIDDFKKFVHRNHR 435

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
             +R   I +KLEGL RH STHAAGI+I D PL +  P+ +     L  TQ+ M   E+ G
Sbjct: 436  HERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLL--TQWTMTEAERIG 493

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL+   T GIFQLES 
Sbjct: 494  LLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESD 553

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+  +HP ++P+LK T 
Sbjct: 554  GVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTY 613

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ FI G  +NG  + I+
Sbjct: 614  GVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGTKQNGYHEDIS 673

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  ++  + + +K  +  
Sbjct: 674  KQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMI 733

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865
            ++A++  I I+PP++N     +K     IY S+  IKGVG  + + I+E    +  F   
Sbjct: 734  EEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKVIVEERYQNGKFKDF 793

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D        V     N  ++
Sbjct: 794  FDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ-------VLDGDLNIEQD 846

Query: 926  IFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
             F  +    K  + DK  L    +       + E+  LGFY S HP+D  K  + K  + 
Sbjct: 847  GFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQHPVD--KKFVAKQYLT 898

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++ S A    NN  +       +Q +T+ G  + +VT ++  +  +   FP
Sbjct: 899  IFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFP 947



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4  YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIFG 63

Query: 73 CQL 75
            +
Sbjct: 64 MTI 66


>gi|315149565|gb|EFT93581.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0012]
          Length = 1109

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 339/1038 (32%), Positives = 543/1038 (52%), Gaps = 68/1038 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +      +G +       ++L     +GYQ+L++L S   +  +G   +
Sbjct: 62   IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
                S L +     L  +T  + G + + FF +  Q        F++L  + D   + ++
Sbjct: 110  AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244
                 ++ R   +       +LP VA      L+ E+  A  VL ++  +    + SQ  
Sbjct: 161  HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219

Query: 245  RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             P +   +YL+       +M+ I     E ++NT+++A  C   + +H  +LP F     
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D Q    + LR   +  L  R+        +  + Y++RL+ EL +I  M F  YFLIV
Sbjct: 274  PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+
Sbjct: 326  WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +P
Sbjct: 386  DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L 
Sbjct: 446  NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+     +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+
Sbjct: 505  NLVPLQLG-SNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLN 563

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI 
Sbjct: 564  QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            V+  RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ K
Sbjct: 624  VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++
Sbjct: 684  KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I + 
Sbjct: 744  KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +++KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +
Sbjct: 804  FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863

Query: 898  RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R QL   L+ NIQ     +     +  E +   E          E+ +      R E E+
Sbjct: 864  RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015
            + LG Y SGHP + +K    K  +    + V  + GN   +L   V + +  +T+KG ++
Sbjct: 912  QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVGNQPTKLLIYVKNIRTIRTKKGEQM 967

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +         FP
Sbjct: 968  AFVDGDDTTGSISLTLFP 985


>gi|282904273|ref|ZP_06312161.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus C160]
 gi|282595891|gb|EFC00855.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus C160]
          Length = 1065

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/772 (37%), Positives = 441/772 (57%), Gaps = 40/772 (5%)

Query: 268  PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
            PE       IA++C+  L+ H  +LP++ +   D+  K+    +    +  LE+      
Sbjct: 210  PEYFTQADRIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVLVTQLKKLEL------ 262

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                 +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ VGPGRGS AGS+ +
Sbjct: 263  -----NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVS 317

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++VI+YVQ KYG   V+ I+
Sbjct: 318  YLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVIQYVQEKYGELHVSGIV 377

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            TFG L A+A  RDVGR +      ++ +  LIP+     ++L        F++    +  
Sbjct: 378  TFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEAYQIDDFKKFVHRNHR 435

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
             +R   I +KLEGL RH STHAAGI+I D PL +  P+ +     L  TQ+ M   E+ G
Sbjct: 436  HERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLL--TQWTMTEAERIG 493

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGL+ L+++ + L  + +  G+ +D+  IP DD + + LL+   T GIFQLES 
Sbjct: 494  LLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPIDDQKVFELLSQGDTTGIFQLESD 553

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+  +HP ++P+LK T 
Sbjct: 554  GVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTY 613

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ FI G  +NG  + I+
Sbjct: 614  GVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGTKQNGYHEDIS 673

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  ++  + + +K  +  
Sbjct: 674  KQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMI 733

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865
            ++A++  I I+PP++N     +K     IY S+  IKGVG  + + I+E    +  F   
Sbjct: 734  EEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKVIVEERYQNGKFKDF 793

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D        V     N  ++
Sbjct: 794  FDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ-------VLDGDLNIEQD 846

Query: 926  IFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
             F  +    K  + DK  L    +       + E+  LGFY S HP+D  K  + K  + 
Sbjct: 847  GFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQHPVD--KKFVAKQYLT 898

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++ S A    NN  +       +Q +T+ G  + +VT ++  +  +   FP
Sbjct: 899  IFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFP 947



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4  YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIFG 63

Query: 73 CQL 75
            +
Sbjct: 64 MTI 66


>gi|261208961|ref|ZP_05923366.1| DNA polymerase III alpha subunit [Enterococcus faecium TC 6]
 gi|289565227|ref|ZP_06445679.1| DNA polymerase III alpha subunit [Enterococcus faecium D344SRF]
 gi|294615026|ref|ZP_06694915.1| DNA polymerase III subunit alpha [Enterococcus faecium E1636]
 gi|260077000|gb|EEW64722.1| DNA polymerase III alpha subunit [Enterococcus faecium TC 6]
 gi|289163048|gb|EFD10896.1| DNA polymerase III alpha subunit [Enterococcus faecium D344SRF]
 gi|291592157|gb|EFF23777.1| DNA polymerase III subunit alpha [Enterococcus faecium E1636]
          Length = 1104

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 337/1037 (32%), Positives = 533/1037 (51%), Gaps = 73/1037 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++     N G         ++       GYQ+LI+L SR  + +      +
Sbjct: 63   IGLHLSYTYEEK----NYG---------LLAYAKDEIGYQQLIKLSSRKMIQE------K 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFGDRLYVN 185
            + L+ + E      ++    S   +  AF     FF   Q         + +F    Y+ 
Sbjct: 104  LELAEMTETDHLAFVVPANHS---VSEAFNKEDNFFGHWQ------FLLENVFTRNFYIG 154

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            L  +   D+  E    Q        L A +    L +E+  A +V+  +   + +  ++ 
Sbjct: 155  LIENTP-DQLPEW--YQYVIKENYSLCALHPIASLQQEELFALEVMKHIKDGSQIPLENL 211

Query: 246  PR---VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                 +T + YL +  EM+  F  + L +A+     +A   SF  Q H  +LP +     
Sbjct: 212  SASLPLTANGYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG 271

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                K+    LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFLIV
Sbjct: 272  ----KQAGEYLRELCYSQVERRITN-------YTKEYQERLDYELSVIHQMGFDDYFLIV 320

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+
Sbjct: 321  WDVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDL 380

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IP
Sbjct: 381  DIPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIP 440

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     ++ QA     +  E   A      L + +  LEGL RH STHAAG+VI D+ L 
Sbjct: 441  NQLKITLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLL 499

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
            +LVP+ R    +  +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L 
Sbjct: 500  ELVPLQRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLK 558

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP +D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI 
Sbjct: 559  EIPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNID 618

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RK GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ K
Sbjct: 619  TFIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSK 678

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D++K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A++
Sbjct: 679  KKKDVLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYL 738

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYS 838
            K H+P  F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + 
Sbjct: 739  KAHHPGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFG 798

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG+       I+ E   + PF S++ F  R+D + L   +L+SL   G  D    +
Sbjct: 799  LTAIKGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPN 858

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R QL+  L+   K    V    +     I A ++   +D    E+  +E   +       
Sbjct: 859  RKQLMLDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL------- 909

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIG 1016
              G Y SGHP + +     ++ +    + +  I  N  + L  M+   ++ +T+KG  + 
Sbjct: 910  --GIYLSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMA 963

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +V  ++ + E     FP
Sbjct: 964  FVEGTDSSGEISVTVFP 980


>gi|38234155|ref|NP_939922.1| DNA polymerase III subunit alpha [Corynebacterium diphtheriae NCTC
            13129]
 gi|38200417|emb|CAE50105.1| DNA polymerase III alpha subunit [Corynebacterium diphtheriae]
          Length = 1186

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 335/1017 (32%), Positives = 529/1017 (52%), Gaps = 61/1017 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  SFVHL  H+ YS+L+G   ++ + +++     PA+ +TD  N+F +  F +   A
Sbjct: 1    MAKKSSFVHLHNHTEYSMLDGMAKVDMLAEEVVRQGMPAVGMTDHGNMFGSDAFYRAMKA 60

Query: 65   AGIQPIIGCQLDIDMQDNL-KMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIE 114
            AG++PIIG +  +     L K   +   P      +          +L    EG   L  
Sbjct: 61   AGVKPIIGIEAYMAPGSRLHKERVRWGEPHQKSDDVSASGAYLHQTMLAENVEGLHNLFY 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E  T G+I  TG  SG +           A +    +
Sbjct: 121  LSSMASYEGQLGKWPRMDAELIAEHAT-GIIATTGCPSGDVQTRLRLGQFDQALEAAAMW 179

Query: 175  KKLFG-DRLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            + ++G +  ++ L  H     +R R S+++++    +LP + TN+  ++ E    AH+ +
Sbjct: 180  QDIYGKENYFLELMDHGLEIENRVR-SELLEIGRKLDLPPLVTNDCHYVLESQAPAHEAM 238

Query: 232  MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHA 289
            + V     +S  DR +     +Y+K   +M   +  L P+A +NT+ IA R     ++  
Sbjct: 239  LCVQTGKTLSDPDRFKFDGSGYYIKTAEQMRETWDSLVPQACDNTLWIAERVQDYGEIWE 298

Query: 290  PILPRFIEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
            P  P       D  +       LR++   GL +R   GA+      Q+Y +R +FE++VI
Sbjct: 299  P-HPHDRMPIADVPEGHTPTSWLRHEVHEGLRMRFNGGAVP-----QNYLERAEFEIDVI 352

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
                +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFL
Sbjct: 353  DMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHGLLFERFL 412

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--Q 466
            NP+R S PD DIDF   RR E+IRY   ++G +++AQ+ITFG+++ K AL+D  R    Q
Sbjct: 413  NPERPSAPDIDIDFDDRRRGEMIRYAAQRWGEDKIAQVITFGTVKTKQALKDSARVQYGQ 472

Query: 467  MPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
              Y   DR+ K +P              DP HP   +A       R     DP V ++ +
Sbjct: 473  EGYKMADRITKELPPAIMAKDIPLSGIMDPEHPRYGEA----GEVRHLIETDPDVRKIYD 528

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             ++ LEG+ R A  HA  +++   PL + +PM++       +T +     E  GL+K DF
Sbjct: 529  TARGLEGVVRQAGVHACAVIMASVPLLEHIPMWKRANDGALITGWPYPACEAIGLLKMDF 588

Query: 574  LGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL+ LT++   L+ +   R  ++DL  +  DD   Y LL++  TLG+FQL+S GM++ L
Sbjct: 589  LGLRNLTVIGDCLENIKINRNEELDLEALQTDDPNVYKLLSSGDTLGVFQLDSGGMQELL 648

Query: 633  EGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQ 686
            + MQP    DI+A ++LYRPGP  ++    Y +RKNG++ I  IHP L +P+   L+ET 
Sbjct: 649  KRMQPTGFNDIVASLALYRPGPMGVNAHWDYADRKNGRKPIEPIHPELEEPLKEILEETY 708

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+I+YQEQ+M+I++ L+ Y+  EAD  R+AMGKK  E + K+ ++F  G   NG SK   
Sbjct: 709  GLIVYQEQIMEISRKLANYTAGEADGFRKAMGKKKPEVLAKEYKKFSEGMFSNGYSKAAV 768

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              ++  +  FA Y FNKSHAA Y ++SY TA++K +Y  E++AA +T   D  +K   + 
Sbjct: 769  DALWGTIEPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVADKKDKSAIYL 828

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSL 865
             + R  +I ++ P VN   ++F      I + L A++ VG      I++A  +K  F   
Sbjct: 829  SNCRHLDISVLSPDVNESHLNFMPVGEDIRFGLGAVRNVGEDVVAAIIKAREEKGAFTDF 888

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             D+  ++D    N+RV ESL+ AGA D   + R  LL   ++        +K       +
Sbjct: 889  SDYLDKIDITACNKRVTESLIKAGAFDSMDHPRKGLLLIHEDAVDAVTSTKKAADKGQFD 948

Query: 926  IFAHEKGTFSDKITLEK-FSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPIL 975
            +FA   G  +D   +   F+V+    +++       E+ +LG Y SGHPLD Y+  L
Sbjct: 949  LFA---GLGADAEEVNNVFAVQIPDAQWDKKHQLALEREMLGLYVSGHPLDGYEEAL 1002


>gi|69247357|ref|ZP_00604321.1| DNA polymerase III alpha subunit [Enterococcus faecium DO]
 gi|257891358|ref|ZP_05671011.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260560443|ref|ZP_05832617.1| DNA polymerase III alpha subunit [Enterococcus faecium C68]
 gi|314937961|ref|ZP_07845274.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133a04]
 gi|314940993|ref|ZP_07847895.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133C]
 gi|314947550|ref|ZP_07850962.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0082]
 gi|314953129|ref|ZP_07856084.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133A]
 gi|314993023|ref|ZP_07858417.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133B]
 gi|314995294|ref|ZP_07860404.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133a01]
 gi|68194880|gb|EAN09352.1| DNA polymerase III alpha subunit [Enterococcus faecium DO]
 gi|257827718|gb|EEV54344.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260073445|gb|EEW61773.1| DNA polymerase III alpha subunit [Enterococcus faecium C68]
 gi|313590479|gb|EFR69324.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133a01]
 gi|313592474|gb|EFR71319.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133B]
 gi|313594797|gb|EFR73642.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133A]
 gi|313600185|gb|EFR79028.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133C]
 gi|313642684|gb|EFS07264.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133a04]
 gi|313645993|gb|EFS10573.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0082]
          Length = 1104

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 336/1037 (32%), Positives = 533/1037 (51%), Gaps = 73/1037 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++     N G         ++       GYQ+L++L SR  + +      +
Sbjct: 63   IGLHLSYTYEEK----NYG---------LLAYAKDEIGYQQLMKLSSRKMIQE------K 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFGDRLYVN 185
            + L+ + E      ++    S   +  AF     FF   Q         + +F    Y+ 
Sbjct: 104  LELAEMTETDHLAFVVPANHS---VSEAFNKEDNFFGHWQ------FLLENVFTRNFYIG 154

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            L  +   D+  E    Q        L A +    L +E+  A +V+  +   + +  ++ 
Sbjct: 155  LTENTP-DQLPEW--YQYVIKENYSLCALHPIASLQQEELFALEVMKHIKEGSQIPLENL 211

Query: 246  PR---VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                 +T + YL +  EM+  F  + L +A+     +A   SF  Q H  +LP +     
Sbjct: 212  SASLPLTANVYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG 271

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                K+    LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFLIV
Sbjct: 272  ----KQAGEYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFLIV 320

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+
Sbjct: 321  WDVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDL 380

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IP
Sbjct: 381  DIPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIP 440

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     ++ QA     +  E   A      L + +  LEGL RH STHAAG+VI D+ L 
Sbjct: 441  NQLKITLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLL 499

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
            +LVP+ R    +  +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L 
Sbjct: 500  ELVPLQRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLK 558

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP +D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI 
Sbjct: 559  EIPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRLDPENIEDIAAVNALYRPGPMQNID 618

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RK GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ K
Sbjct: 619  TFIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSK 678

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D++K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A++
Sbjct: 679  KKKDVLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYL 738

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYS 838
            K H+P  F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + 
Sbjct: 739  KAHHPGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFG 798

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG+       I+ E   + PF S++ F  R+D + L   +L+SL   G  D    +
Sbjct: 799  LTAIKGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPN 858

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R QL+  L+   K    V    +     I A ++   +D    E+  +E   +       
Sbjct: 859  RKQLMLDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL------- 909

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIG 1016
              G Y SGHP + +     ++ +    + +  I  N  + L  M+   ++ +T+KG  + 
Sbjct: 910  --GIYLSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMA 963

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +V  ++ + E     FP
Sbjct: 964  FVEGTDSSGEISVTVFP 980


>gi|297580888|ref|ZP_06942813.1| DNA polymerase III [Vibrio cholerae RC385]
 gi|297534714|gb|EFH73550.1| DNA polymerase III [Vibrio cholerae RC385]
          Length = 649

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 275/664 (41%), Positives = 400/664 (60%), Gaps = 31/664 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G++
Sbjct: 4   PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +  
Sbjct: 64  PIIGADF----------TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 113

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L R
Sbjct: 114 PVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 172

Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
               D   ES +   + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 173 TGRADE--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
           P+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 231 PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----G 285

Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286 MAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 345

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
           DP   +    IA+ +  +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466 DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596
             P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V
Sbjct: 525 FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584

Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585 RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657 NIVV 660
           + +V
Sbjct: 645 SGMV 648


>gi|257880259|ref|ZP_05659912.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,230,933]
 gi|257883058|ref|ZP_05662711.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,502]
 gi|294623223|ref|ZP_06702097.1| DNA polymerase III subunit alpha [Enterococcus faecium U0317]
 gi|257814487|gb|EEV43245.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,230,933]
 gi|257818716|gb|EEV46044.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,502]
 gi|291597365|gb|EFF28542.1| DNA polymerase III subunit alpha [Enterococcus faecium U0317]
          Length = 1104

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 336/1037 (32%), Positives = 533/1037 (51%), Gaps = 73/1037 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++     N G         ++       GYQ+L++L SR  + +      +
Sbjct: 63   IGLHLSYTYEEK----NYG---------LLAYAKDEIGYQQLMKLSSRKMIQE------K 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFGDRLYVN 185
            + L+ + E      ++    S   +  AF     FF   Q         + +F    Y+ 
Sbjct: 104  LELAEMTETDHLAFVVPANHS---VSEAFNKEDNFFGHWQ------FLLENVFTRNFYIG 154

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            L  +   D+  E    Q        L A +    L +E+  A +V+  +   + +  ++ 
Sbjct: 155  LTENTP-DQLPEW--YQYVIKENYSLCALHPIASLQQEELFALEVMKHIKEGSQIPLENL 211

Query: 246  PR---VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                 +T + YL +  EM+  F  + L +A+     +A   SF  Q H  +LP +     
Sbjct: 212  SASLPLTANVYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG 271

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                K+    LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFLIV
Sbjct: 272  ----KQAGEYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFLIV 320

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+
Sbjct: 321  WDVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDL 380

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IP
Sbjct: 381  DIPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIP 440

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     ++ QA     +  E   A      L + +  LEGL RH STHAAG+VI D+ L 
Sbjct: 441  NQLKITLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLL 499

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
            +LVP+ R    +  +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L 
Sbjct: 500  ELVPLQRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLK 558

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP +D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI 
Sbjct: 559  EIPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRLDPENIEDIAAVNALYRPGPMQNID 618

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RK GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ K
Sbjct: 619  TFIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSK 678

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D++K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A++
Sbjct: 679  KKKDVLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYL 738

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYS 838
            K H+P  F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + 
Sbjct: 739  KAHHPGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFG 798

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG+       I+ E   + PF S++ F  R+D + L   +L+SL   G  D    +
Sbjct: 799  LTAIKGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPN 858

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R QL+  L+   K    V    +     I A ++   +D    E+  +E   +       
Sbjct: 859  RKQLMLDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL------- 909

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIG 1016
              G Y SGHP + +     ++ +    + +  I  N  + L  M+   ++ +T+KG  + 
Sbjct: 910  --GIYLSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMA 963

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +V  ++ + E     FP
Sbjct: 964  FVEGTDSSGEISVTVFP 980


>gi|294619116|ref|ZP_06698611.1| DNA polymerase III subunit alpha [Enterococcus faecium E1679]
 gi|291594777|gb|EFF26159.1| DNA polymerase III subunit alpha [Enterococcus faecium E1679]
          Length = 1104

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 337/1037 (32%), Positives = 532/1037 (51%), Gaps = 73/1037 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++     N G         ++       GYQ+LI+L SR  + +      +
Sbjct: 63   IGLHLSYTYEEK----NYG---------LLAYAKDEIGYQQLIKLSSRKMIQE------K 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFGDRLYVN 185
            + L+ + E      ++    S   +  AF     FF   Q         + +F    Y+ 
Sbjct: 104  LELAEMTETDHLAFVVPANHS---VSEAFNKEDNFFGHWQ------FLLENVFTRNFYIG 154

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            L  +   D+  E    Q        L A +    L +E+  A +V+  +   + +  ++ 
Sbjct: 155  LIENTP-DQLPEW--YQYVIKENYSLCALHPIASLQQEELFALEVMKHIKDGSQIPLENL 211

Query: 246  PR---VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                 +T + YL +  EM+  F  + L +A+     +A   SF  Q H  +LP +     
Sbjct: 212  SASLPLTANGYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG 271

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                K+    LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFLIV
Sbjct: 272  ----KQAGEYLRELCYSQVERRITN-------YTKEYQERLDYELSVIHQMGFDDYFLIV 320

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+
Sbjct: 321  WDVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDL 380

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IP
Sbjct: 381  DIPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIP 440

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     +  QA     +  E   A      L + +  LEGL RH STHAAG+VI D+ L 
Sbjct: 441  NQLKITLP-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLL 499

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
            +LVP+ R    +  +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L 
Sbjct: 500  ELVPLQRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLK 558

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP +D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI 
Sbjct: 559  EIPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNID 618

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RK GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ K
Sbjct: 619  TFIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSK 678

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D++K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A++
Sbjct: 679  KKKDVLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYL 738

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYS 838
            K H+P  F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + 
Sbjct: 739  KAHHPGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFG 798

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG+       I+ E   + PF S++ F  R+D + L   +L+SL   G  D    +
Sbjct: 799  LTAIKGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPN 858

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R QL+  L+   K    V    +     I A ++   +D    E+  +E   +       
Sbjct: 859  RKQLMLDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL------- 909

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIG 1016
              G Y SGHP + +     ++ +    + +  I  N  + L  M+   ++ +T+KG  + 
Sbjct: 910  --GIYLSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMA 963

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +V  ++ + E     FP
Sbjct: 964  FVEGTDSSGEISVTVFP 980


>gi|253315124|ref|ZP_04838337.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            str. CF-Marseille]
          Length = 967

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 288/772 (37%), Positives = 439/772 (56%), Gaps = 42/772 (5%)

Query: 269  EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
            E L     IA++C+  L+ H  +LP++ +   D+  K+    +    +  LE+       
Sbjct: 113  EYLTQVDVIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVLVTQLKKLEL------- 164

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
               Y    Y +RL +E  VI  M F  YFLIV+D I +AK N++ VGPGRGS AGS+ +Y
Sbjct: 165  --NYDV--YLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVSY 220

Query: 389  ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
             L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+YVQ KYG   V+ I+T
Sbjct: 221  LLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQEKYGELHVSGIVT 280

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
            FG L A+A  RDVGR +      ++ +  LIP+     ++L        F++    +   
Sbjct: 281  FGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEAYQIDDFKKFVHRNHRH 338

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
            +R   I +KLEGL RH STHAAGI+I D PL +  P+ +     L  TQ+ M   E+ GL
Sbjct: 339  ERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLL--TQWTMTEAERIGL 396

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            +K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL+   T GIFQLES G
Sbjct: 397  LKIDFLGLRNLSIIHQILIQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESDG 456

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            +R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+  +HP ++P+LK T G
Sbjct: 457  VRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTYG 516

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            VIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ FI GA +NG  + I+ 
Sbjct: 517  VIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGAKQNGYHEDISK 576

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  ++  + + +K  +  +
Sbjct: 577  QIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMIE 636

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLE 866
            +A++  I I+PP++N     +K     IY S+  IKGVG  + + I+ E   +  F    
Sbjct: 637  EAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKVIVDERYQNGKFKDFF 696

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D        V     N  ++ 
Sbjct: 697  DFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ-------VLDGDLNIEQDG 749

Query: 927  FAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
            F  +    K  + DK  L    +       + E+  LGFY S HP+D      +K   K 
Sbjct: 750  FLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQHPVD------KKFVAKQ 797

Query: 983  YEESVATIRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Y          N +   +   K +Q +T+ G  + +VT ++  +  +   FP
Sbjct: 798  YLTIFKLSNAQNYKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFP 849


>gi|293569257|ref|ZP_06680555.1| DNA polymerase III subunit alpha [Enterococcus faecium E1071]
 gi|291587963|gb|EFF19813.1| DNA polymerase III subunit alpha [Enterococcus faecium E1071]
          Length = 1104

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 336/1037 (32%), Positives = 531/1037 (51%), Gaps = 73/1037 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++     N G         ++       GYQ+L++L SR  + +      +
Sbjct: 63   IGLHLSYTYEEK----NYG---------LLAYAKDEIGYQQLMKLSSRKMIQE------K 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFGDRLYVN 185
            + L+ + E      ++    S   +  AF     FF   Q           +F    Y+ 
Sbjct: 104  LELAEMTETDHLAFVVPANHS---VSEAFNKEDNFFGHWQ------FLLGNVFTRNFYIG 154

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            L  +   D+  E    Q        L A +    L +E+  A +V+  +   + +  ++ 
Sbjct: 155  LTENTP-DQLPEW--YQYVIKENYSLCALHPIASLQQEELFALEVMKHIKEGSQIPLENL 211

Query: 246  PR---VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                 +T + YL +  EM+  F  + L +A+     +A   SF  Q H  +LP +     
Sbjct: 212  SASLPLTANGYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG 271

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                K+    LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFLIV
Sbjct: 272  ----KQAGEYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFLIV 320

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP R +MPD D+
Sbjct: 321  WDVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPKRFTMPDIDL 380

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IP
Sbjct: 381  DIPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIP 440

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     ++ QA     +  E   A      L + +  LEGL RH STHAAG+VI D+ L 
Sbjct: 441  NQLKITLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLL 499

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
            +LVP+ R    +  +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L 
Sbjct: 500  ELVPLQRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLK 558

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP +D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI 
Sbjct: 559  EIPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRLDPENIEDIAAVNALYRPGPMQNID 618

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RK GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ K
Sbjct: 619  TFIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSK 678

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D++K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A++
Sbjct: 679  KKKDVLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYL 738

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYS 838
            K H+P  F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + 
Sbjct: 739  KAHHPGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFG 798

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG+       I+ E   + PF S++ F  R+D + L   +L+SL   G  D    +
Sbjct: 799  LTAIKGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPN 858

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R QL+  L+   K    V    +     I A ++   +D    E+  +E   +       
Sbjct: 859  RKQLMLDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL------- 909

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIG 1016
              G Y SGHP + +     ++ +    + +  I  N  + L  M+   ++ +T+KG  + 
Sbjct: 910  --GIYLSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMA 963

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +V  ++ + E     FP
Sbjct: 964  FVEGTDSSGEISVTVFP 980


>gi|227517968|ref|ZP_03948017.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0104]
 gi|227074586|gb|EEI12549.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0104]
          Length = 1109

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 337/1037 (32%), Positives = 540/1037 (52%), Gaps = 66/1037 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +      +G +       ++L     +GYQ+L++L S   +  +G   +
Sbjct: 62   IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
                S L +     L  +T  + G + + FF +  Q        F++L  + D   + ++
Sbjct: 110  AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244
                 ++ R   +       +LP VA      L+ E+  A  VL ++  +    + SQ  
Sbjct: 161  HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219

Query: 245  RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             P +   +YL+       +M+ I     E ++NT+++A  C   + +H  +LP F     
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D Q    + LR   +  L  R+        +  + Y++RL+ EL +I  M F  YFLIV
Sbjct: 274  PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+
Sbjct: 326  WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +P
Sbjct: 386  DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L 
Sbjct: 446  NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+     +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+
Sbjct: 505  NLVPLQLG-SNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAIKRVYNQTIHLN 563

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI 
Sbjct: 564  QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            V+  RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ K
Sbjct: 624  VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++
Sbjct: 684  KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I + 
Sbjct: 744  KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +++KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +
Sbjct: 804  FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863

Query: 898  RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R QL   L+ NIQ     +     +  E +   E          E+ +      R E E+
Sbjct: 864  RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            + LG Y SGHP + +K        +   E V      + +L   V + +  +T+KG ++ 
Sbjct: 912  QYLGVYLSGHPTEEFKKTRLAKQTQLVHELV---ENQSTKLLIYVKNIRTIRTKKGEQMA 968

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +V   +         FP
Sbjct: 969  FVDGDDTTGSISLTLFP 985


>gi|300860057|ref|ZP_07106145.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TUSoD Ef11]
 gi|300850875|gb|EFK78624.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TUSoD Ef11]
 gi|315144680|gb|EFT88696.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX2141]
 gi|315160663|gb|EFU04680.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0645]
          Length = 1109

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 339/1038 (32%), Positives = 542/1038 (52%), Gaps = 68/1038 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +      +G +       ++L     +GYQ+L++L S   +  +G   +
Sbjct: 62   IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
                S L +     L  +T  + G + + FF +  Q        F++L  + D   + ++
Sbjct: 110  AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244
                 ++ R   +       +LP VA      L+ E+  A  VL ++  +    + SQ  
Sbjct: 161  HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219

Query: 245  RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             P +   +YL+       +M+ I     E ++NT+++A  C   + +H  +LP F     
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D Q    + LR   +  L  R+        +  + Y++RL+ EL +I  M F  YFLIV
Sbjct: 274  PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+
Sbjct: 326  WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +P
Sbjct: 386  DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L 
Sbjct: 446  NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+     +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+
Sbjct: 505  NLVPLQLG-SNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLN 563

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI 
Sbjct: 564  QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            V+  RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ K
Sbjct: 624  VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D+++  F++GA + G  K  A  +++ + +FA+YGFN+SHA AY+ I +Q A++
Sbjct: 684  KKKDVLDEERNHFVNGALQQGYPKETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I + 
Sbjct: 744  KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +++KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +
Sbjct: 804  FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863

Query: 898  RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R QL   L+ NIQ     +     +  E +   E          E+ +      R E E+
Sbjct: 864  RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015
            + LG Y SGHP + +K    K  +    + V  +  N   +L   V + +  +T+KG ++
Sbjct: 912  QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +         FP
Sbjct: 968  AFVDGDDTTGSISLTLFP 985


>gi|257415661|ref|ZP_05592655.1| DNA polymerase III alpha subunit [Enterococcus faecalis AR01/DG]
 gi|257157489|gb|EEU87449.1| DNA polymerase III alpha subunit [Enterococcus faecalis ARO1/DG]
 gi|315147993|gb|EFT92009.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX4244]
          Length = 1109

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 339/1038 (32%), Positives = 543/1038 (52%), Gaps = 68/1038 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +      +G +       ++L     +GYQ+L++L S   +  +G   +
Sbjct: 62   IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
                S L +     L  +T  + G + + FF +  Q        F++L  + D   + ++
Sbjct: 110  AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244
                 ++ R   +       +LP VA      L+ E+  A  VL ++  +    + SQ  
Sbjct: 161  HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219

Query: 245  RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             P +   +YL+       +M+ I     E ++NT+++A  C   + +H  +LP F     
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D Q    + LR   +  L  R+        +  + Y++RL+ EL +I  M F  YFLIV
Sbjct: 274  PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+
Sbjct: 326  WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +P
Sbjct: 386  DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L 
Sbjct: 446  NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+ +   +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+
Sbjct: 505  NLVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLN 563

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI 
Sbjct: 564  QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            V+  RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ K
Sbjct: 624  VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D+++  F++GA + G  K  A  +++ + +FA+YGFN+SHA AY+ I +Q A++
Sbjct: 684  KKKDVLDEERNHFVNGALQQGYPKETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I + 
Sbjct: 744  KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +++KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +
Sbjct: 804  FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863

Query: 898  RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R QL   L+ NIQ     +     +  E +   E          E+ +      R E E+
Sbjct: 864  RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015
            + LG Y SGHP + +K    K  +    + V  +  N   +L   V + +  +T+KG ++
Sbjct: 912  QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +         FP
Sbjct: 968  AFVDGDDTTGSISLTLFP 985


>gi|257885304|ref|ZP_05664957.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,501]
 gi|257821156|gb|EEV48290.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,501]
          Length = 1104

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 335/1037 (32%), Positives = 533/1037 (51%), Gaps = 73/1037 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++     N G         ++       GYQ+L++L SR  + +      +
Sbjct: 63   IGLHLSYTYEEK----NYG---------LLAYAKDEIGYQQLMKLSSRKMIQE------K 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFGDRLYVN 185
            + L+ + E      ++    S   +  AF     FF   Q         + +F    Y+ 
Sbjct: 104  LDLAEMTETDHLAFVVPANHS---VSEAFNKEDNFFGHWQ------FLLENVFTRNFYIG 154

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            L  +   D+  E    Q        L A +    L +E+  A +V+  +   + +  ++ 
Sbjct: 155  LTENTP-DQLPEW--YQYVIKENYSLCALHPIASLQQEELFALEVMKHIKDGSQIPLENL 211

Query: 246  PR---VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                 +T + YL +  EM+  F  + L +A+     +A   SF  Q H  +LP +     
Sbjct: 212  SASLPLTANGYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG 271

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                K+    LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFLIV
Sbjct: 272  ----KQAGEYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFLIV 320

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+
Sbjct: 321  WDVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDL 380

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IP
Sbjct: 381  DIPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIP 440

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     ++ QA     +  E   A      L + +  LEGL RH STHAAG+VI D+ L 
Sbjct: 441  NQLKITLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLL 499

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
            +LVP+ R    +  +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L 
Sbjct: 500  ELVPLQRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLK 558

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P +D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI 
Sbjct: 559  EMPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNID 618

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RK GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ K
Sbjct: 619  TFIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSK 678

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D++K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A++
Sbjct: 679  KKKDVLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYL 738

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYS 838
            K H+P  F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + 
Sbjct: 739  KAHHPGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFG 798

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG+       I+ E   + PF S++ F  R+D + L   +L+SL   G  D    +
Sbjct: 799  LTAIKGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPN 858

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R QL+  L+   K    V    +     I A ++   +D    E+  +E   +       
Sbjct: 859  RKQLMLDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL------- 909

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIG 1016
              G Y SGHP + +     ++ +    + +  I  N  + L  M+   ++ +T+KG  + 
Sbjct: 910  --GIYLSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMA 963

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +V  ++ + E     FP
Sbjct: 964  FVEGTDSSGEISVTVFP 980


>gi|46200108|ref|YP_005775.1| DNA polymerase III alpha subunit [Thermus thermophilus HB27]
 gi|46197736|gb|AAS82148.1| DNA polymerase III alpha subunit [Thermus thermophilus HB27]
          Length = 2067

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 308/769 (40%), Positives = 441/769 (57%), Gaps = 64/769 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           F HL  H+ +SLL+GA  L+++L   K    + PA+A+TD  NLF A+EF +KA   GI+
Sbjct: 7   FAHLHQHTQFSLLDGAAKLSDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATEMGIK 66

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PI+G +  +  +       +GK        + LL     GYQ L+ L SR YL +   + 
Sbjct: 67  PILGYEAYVAAESRFD-RKRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYL-EGFYEK 124

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            RI    L+E   EGLI L+G     I +    +   +AE RL  +  +F DR ++ +Q 
Sbjct: 125 PRIDREILRE-HAEGLIALSGCLGAEIPQFILQDRLDLAEARLNEYLSIFKDRFFIEIQN 183

Query: 189 HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H   ++ + ++V+ + A  + L +VATN+  ++ +ED  AH+VL+A+   + +    R R
Sbjct: 184 HGLPEQKKVNEVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKSTLDDPGRWR 243

Query: 248 VTPDH-YLKNRSEMVSIFSDLP---EALENTVEIARRCSFILQVHAPI---LPRF----- 295
              D  Y+K   EM ++F +     E  +NTVEIAR C+  L +   +   +PRF     
Sbjct: 244 FPCDEFYVKTPEEMRAMFPEEEWGDEPFDNTVEIARMCNVELPIGDKMVYRIPRFPLPEG 303

Query: 296 ---------------IEKECDDIQK---------------EEENELRNKAVAGLEV---- 321
                          + +  D I +                 + E   +A+A +E     
Sbjct: 304 RTEAQYLMELTFKGLLRRYPDRITEGFYREVFRLLGKLPPHGDGEALAEALAQVEREAWE 363

Query: 322 RLAQG----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
           RL +     A  K + A+    R  +EL+VI RM F GYFLIV D+I WA++N + VGPG
Sbjct: 364 RLMKSLPPLAGVKEWTAEAIFHRALYELSVIERMGFPGYFLIVQDYINWARRNGVSVGPG 423

Query: 378 RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
           RGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF    RD VI+YV+ +
Sbjct: 424 RGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYVRER 483

Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDS 496
           YG ++VAQI T GSL +KAAL+DV R   +P+ + + L KLIP     P  LQ AI    
Sbjct: 484 YGEDKVAQIGTLGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLQEAIQVVP 543

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
             R     DP V  +LE++ +LEGL RHAS HAAG+VI   PL+ LVP+ RD +   PVT
Sbjct: 544 ELRAEMEKDPKVREVLEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRD-QEGRPVT 602

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTK 615
           Q++M  +E  GL+K DFLGL+TLT L +    + A +GV++D   +P DD +T+ LL+  
Sbjct: 603 QYDMGAVEALGLLKMDFLGLRTLTFLDEVKRIVKASQGVELDYDALPLDDPKTFALLSRG 662

Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI-VSI 674
            T G+FQLES GM   L G++P   ED+IA++SLYRPGP+++I  Y  R +G E +  S 
Sbjct: 663 ETKGVFQLESGGMTATLRGLKPRRFEDLIAILSLYRPGPMEHIPTYIRRHHGLEPVSYSE 722

Query: 675 HP----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            P     + P+L ET G+ +YQEQ+MQIA  ++GYSL EAD+LRR + +
Sbjct: 723 FPHAEKYLKPILDETYGIPVYQEQIMQIASAVAGYSLGEADLLRRCLAE 771



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/278 (37%), Positives = 150/278 (53%), Gaps = 16/278 (5%)

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            + SHAAAY+++SYQTA++K HYPVEF+AA +++E  + +K+ ++ +DAR   I+++PP V
Sbjct: 1660 HNSHAAAYSLLSYQTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARAMGIEVLPPDV 1719

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRR 880
            N    DF V   +I + L+A+K VG   A  I+ E     P+ SL DF  R+D K LN+R
Sbjct: 1720 NRSGFDFLVQGRQILFGLSAVKNVGEAAAEAILRERERGGPYRSLGDFLKRLDEKVLNKR 1779

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKI 938
             LE L+ AGALD FG  R +LL SL+ + K   W  +NR      +     G FS  ++ 
Sbjct: 1780 TLEFLIKAGALDGFG-ERARLLASLEGLLK---WAAENREKARSGMM----GLFSEVEEP 1831

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NN 994
             L + +  +   R   E+  LG Y SGHP+  Y P LR+      EE     R     + 
Sbjct: 1832 PLAEAAPLDEITRLRYEKEALGIYVSGHPILRY-PGLRETATCTLEELPHLARDLPPRSR 1890

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + LA MV    +K T+ G  +     S+     EA  F
Sbjct: 1891 VLLAGMVEEVVRKPTKSGGMMARFVLSDETGALEAVAF 1928



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            +SE  V+  +MGKK  EEM   +ERF+ GA + G+ +  A  +F++L  FA+YGFNK   
Sbjct: 1182 VSEDLVVHNSMGKKKVEEMKSHRERFVQGAKERGVPEEEANRLFDMLEAFANYGFNKCLP 1241

Query: 767  AAYAVISYQTA 777
            A   V+ + T 
Sbjct: 1242 ARARVVDWCTG 1252


>gi|55980149|ref|YP_143446.1| DNA polymerase III subunit alpha [Thermus thermophilus HB8]
 gi|55771562|dbj|BAD70003.1| DNA polymerase III alpha subunit [Thermus thermophilus HB8]
          Length = 2067

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 308/769 (40%), Positives = 441/769 (57%), Gaps = 64/769 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           F HL  H+ +SLL+GA  L+++L   K    + PA+A+TD  NLF A+EF +KA   GI+
Sbjct: 7   FAHLHQHTQFSLLDGAAKLSDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATEMGIK 66

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PI+G +  +  +       +GK        + LL     GYQ L+ L SR YL +   + 
Sbjct: 67  PILGYEAYVAAESRFD-RKRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYL-EGFYEK 124

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            RI    L+E   EGLI L+G     I +    +   +AE RL  +  +F DR ++ +Q 
Sbjct: 125 PRIDREILRE-HAEGLIALSGCLGAEIPQFILQDRLDLAEARLNEYLSIFKDRFFIEIQN 183

Query: 189 HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H   ++ + ++V+ + A  + L +VATN+  ++ +ED  AH+VL+A+   + +    R R
Sbjct: 184 HGLPEQKKVNEVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKSTLDDPGRWR 243

Query: 248 VTPDH-YLKNRSEMVSIFSDLP---EALENTVEIARRCSFILQVHAPI---LPRF----- 295
              D  Y+K   EM ++F +     E  +NTVEIAR C+  L +   +   +PRF     
Sbjct: 244 FPCDEFYVKTPEEMRAMFPEEEWGDEPFDNTVEIARMCNVELPIGDKMVYRIPRFPLPEG 303

Query: 296 ---------------IEKECDDIQK---------------EEENELRNKAVAGLEV---- 321
                          + +  D I +                 + E   +A+A +E     
Sbjct: 304 RTEAQYLMELTFKGLLRRYPDRITEGFYREVFRLLGKLPPHGDGEALAEALAQVEREAWE 363

Query: 322 RLAQG----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
           RL +     A  K + A+    R  +EL+VI RM F GYFLIV D+I WA++N + VGPG
Sbjct: 364 RLMKSLPPLAGVKEWTAEAIFHRALYELSVIERMGFPGYFLIVQDYINWARRNGVSVGPG 423

Query: 378 RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
           RGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF    RD VI+YV+ +
Sbjct: 424 RGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYVRER 483

Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDS 496
           YG ++VAQI T GSL +KAAL+DV R   +P+ + + L KLIP     P  LQ AI    
Sbjct: 484 YGEDKVAQIGTLGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLQEAIQVVP 543

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
             R     DP V  +LE++ +LEGL RHAS HAAG+VI   PL+ LVP+ RD +   PVT
Sbjct: 544 ELRAEMEKDPKVREVLEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRD-QEGRPVT 602

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTK 615
           Q++M  +E  GL+K DFLGL+TLT L +    + A +GV++D   +P DD +T+ LL+  
Sbjct: 603 QYDMGAVEALGLLKMDFLGLRTLTFLDEVKRIVKASQGVELDYDALPLDDPKTFALLSRG 662

Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI-VSI 674
            T G+FQLES GM   L G++P   ED+IA++SLYRPGP+++I  Y  R +G E +  S 
Sbjct: 663 ETKGVFQLESGGMTATLRGLKPRRFEDLIAILSLYRPGPMEHIPTYIRRHHGLEPVSYSE 722

Query: 675 HP----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            P     + P+L ET G+ +YQEQ+MQIA  ++GYSL EAD+LRR + +
Sbjct: 723 FPHAEKYLKPILDETYGIPVYQEQIMQIASAVAGYSLGEADLLRRCLAE 771



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 104/278 (37%), Positives = 151/278 (54%), Gaps = 16/278 (5%)

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            + SHAAAY+++SYQTA++K HYPVEF+AA +++E  + +K+ ++ +DAR   I+++PP V
Sbjct: 1660 HNSHAAAYSLLSYQTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARAMGIEVLPPDV 1719

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRR 880
            N    DF V   +I + L+A+K VG   A  I+ E     P+ SL DF  R+D K LN+R
Sbjct: 1720 NRSGFDFLVQGRQILFGLSAVKNVGEAAAEAILRERERGGPYRSLGDFLKRLDEKVLNKR 1779

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKI 938
             LESL+ AGALD FG  R +LL SL+ + K   W  +NR      +     G FS  ++ 
Sbjct: 1780 TLESLIKAGALDGFG-ERARLLASLEGLLK---WAAENREKARSGMM----GLFSEVEEP 1831

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NN 994
             L + +  +   R   E+  LG Y SGHP+  Y P LR+      EE     R     + 
Sbjct: 1832 PLAEAAPLDEITRLRYEKEALGIYVSGHPILRY-PGLRETATCTLEELPHLARDLPPRSR 1890

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + LA MV    +K T+ G  +     S+     EA  F
Sbjct: 1891 VLLAGMVEEVVRKPTKSGGMMARFVLSDETGALEAVAF 1928



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            +SE  V+  +MGKK  EEM   +ERF+ GA + G+ +  A  +F++L  FA+YGFNK   
Sbjct: 1182 VSEDLVVHNSMGKKKVEEMKSHRERFVQGAKERGVPEEEANRLFDMLEAFANYGFNKCLP 1241

Query: 767  AAYAVISYQTA 777
            A   V+ + T 
Sbjct: 1242 ARARVVDWCTG 1252


>gi|293556333|ref|ZP_06674915.1| DNA polymerase III subunit alpha [Enterococcus faecium E1039]
 gi|291601501|gb|EFF31771.1| DNA polymerase III subunit alpha [Enterococcus faecium E1039]
          Length = 1104

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 336/1039 (32%), Positives = 537/1039 (51%), Gaps = 77/1039 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++     N G         ++       GYQ+L++L SR  + +      +
Sbjct: 63   IGLHLSYTYEEK----NYG---------LLAYAKDEIGYQQLMKLSSRKMIQE------K 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFGDRLYVN 185
            + L+ + E      ++    S   +  AF     FF   Q         + +F    Y+ 
Sbjct: 104  LELAEMTETDHLAFVVPANHS---VSEAFNKEDNFFGHWQ------FLLENVFTRNFYIG 154

Query: 186  LQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            L  +   D+  E    V++  Y+    L A +    L +E+  A +V+  +   + +  +
Sbjct: 155  LTENTP-DQLPEWYHYVIKENYS----LCALHPIASLQQEELFALEVMKHIKDGSQIPLE 209

Query: 244  DRPR---VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +      +T + YL +  EM+  F  + L +A+     +A   SF  Q H  +LP +   
Sbjct: 210  NLSASLPLTANGYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVP 269

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  K+    LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFL
Sbjct: 270  NG----KQAGEYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFL 318

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV D + +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD 
Sbjct: 319  IVWDVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDI 378

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+D   +RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K 
Sbjct: 379  DLDIPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKA 438

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IPN     ++ QA     +  E   A      L + +  LEGL RH STHAAG+VI D+ 
Sbjct: 439  IPNQLKITLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKN 497

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L +LVP+ R    +  +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ 
Sbjct: 498  LLELVPLQRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIR 556

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  IP +D +T  L     T G+FQ ES+G+R  L  + P+ IED+ A+ +LYRPGP+ N
Sbjct: 557  LKEIPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDVAAVNALYRPGPMQN 616

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+
Sbjct: 617  IDTFIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAV 676

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             KK K+ +D++K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A
Sbjct: 677  SKKKKDVLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMA 736

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIY 836
            ++K H+P  F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I 
Sbjct: 737  YLKAHHPGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKKEIR 796

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            + L AIKG+       I+ E   + PF S++ F  R+D + L   +L+SL   G  D   
Sbjct: 797  FGLTAIKGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELS 856

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R QL+  L+   K    V    +     I A ++   +D    E+  +E   +     
Sbjct: 857  PNRKQLMLDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL----- 909

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSR 1014
                G Y SGHP + +     ++ +    + +  I  N  + L  M+   ++ +T+KG  
Sbjct: 910  ----GIYLSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGEL 961

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + +V  ++ + E     FP
Sbjct: 962  MAFVEGTDSSGEISVTVFP 980


>gi|319440285|ref|ZP_07989441.1| DNA polymerase III subunit alpha [Corynebacterium variabile DSM
            44702]
          Length = 1188

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 330/1021 (32%), Positives = 520/1021 (50%), Gaps = 69/1021 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K  SFVHL  H+ YS+L+G   ++ +  +++    PA+ +TD  N+F +  F     AA 
Sbjct: 2    KKSSFVHLHNHTEYSMLDGMAKVDLLAQEVSRQGMPAVGMTDHGNMFGSDAFYHAMTAAD 61

Query: 67   IQPIIGCQLDID-----MQDNLKMTNQGKTPFPTVPS------IVLLVSTAEGYQRLIEL 115
            I+PIIG +  +      ++D +K   Q +     V          ++   A G   L  L
Sbjct: 62   IKPIIGIETYMAPDSRLIKDRIKW-GQPEQKRDDVAGGGYYLHQTMMAENATGLHNLFRL 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S      Q  +  R+    + E   EG+I  TG  SG +           A +    ++
Sbjct: 121  SSLASYEGQVSKYPRMDAEIVAE-HAEGIIATTGCPSGDVQTRLRLGQFDKALEAAAMWQ 179

Query: 176  KLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             ++G D  ++ L  H G D   R R+  ++++    ELP + TN+  ++ ++  + H+V+
Sbjct: 180  DIYGKDNYFLELMDH-GLDIEKRVRDD-LLEIGKRLELPPLVTNDCHYVLQKQAKPHEVM 237

Query: 232  MAVAHSTVVSQK------DRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRC-- 281
            + V     + +        R   + D Y    +EM+  + D  +P+  +NT+ IA R   
Sbjct: 238  LCVQTGATLEEPTLDEGGKRFAFSGDGYYIKPAEMLREYWDPIVPDGCDNTLWIAERVQD 297

Query: 282  -SFILQVHA-PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
               + + H    +P++   E         +E+ +    GL  R   G +      Q+Y  
Sbjct: 298  YGELWEEHTHDRMPKYDVPEGHTPTSWLTSEVHD----GLIERFNGGEVP-----QEYLD 348

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            R  +E++VI    +  YFL+VAD I+ A+   I VGPGRGS AG++ AYALTIT+IDP+ 
Sbjct: 349  RAKYEIDVIDMKGYPSYFLVVADLIKHARSIGISVGPGRGSAAGALVAYALTITNIDPIE 408

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              L+FERFLNP+R S PD DIDF  DRR E+IRY    +G ++VAQ+ITFG+++ K A++
Sbjct: 409  HGLMFERFLNPERPSAPDIDIDFADDRRSEMIRYAAENWGEDKVAQVITFGTVKTKQAIK 468

Query: 460  DVGRAL--QMPYSQVDRLCK-LIPNDPAHPVSLQAIADDSRFREARLA--------DPSV 508
            D  RA   Q  +   DR+ K L P   A  + L  I D    R    A        DP V
Sbjct: 469  DASRAHHGQPGFQIADRITKALPPAQAAKDIPLSGIMDPEHPRYGEAAEIRTLIETDPVV 528

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
              + + +  LEG+ R A  HA  +++   PL   +PM++       +T +     E  GL
Sbjct: 529  KEIYDDALGLEGVVRQAGVHACAVIMASVPLMDHIPMWKRPADGAYITGWPYPACEAIGL 588

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            +K DFLGL+ LT++   +  + + RG   DL  +  DD  +Y LL    TLGIFQL+S G
Sbjct: 589  LKMDFLGLRNLTVIADCIKNIKRNRGEDFDLENLETDDPASYELLARGDTLGIFQLDSGG 648

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP----LIDPM 681
            M++ L+ M+P    DI+A ++LYRPGP  +     Y +RKNG++ I  IHP     I  +
Sbjct: 649  MQELLKRMKPTGFNDIVASLALYRPGPMGVGAHWDYADRKNGRKPIEPIHPELAESIKDI 708

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L+ET G+I+YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + K+  +F +G   NG 
Sbjct: 709  LEETYGLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAKEFGKFSAGMKSNGY 768

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            S      +++ +  FA Y FNKSHAA Y ++S+ TA++K HY  E++AA +T   D  +K
Sbjct: 769  SDEAIKALWDTVLPFAGYAFNKSHAAGYGLVSFWTAYLKEHYTAEYMAALLTSVADKKDK 828

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK- 860
               +  D R   ++++ P VN     F+     I + L A++ VG      I++A  +K 
Sbjct: 829  SAIYLADCRHLGVKVLSPDVNESAYTFQSVGEDIRFGLGAVRNVGEDVVDSIVKAREEKG 888

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             F    D+  ++D+   N+RV +SL+ AGA D  G+ R  L    ++        +K   
Sbjct: 889  KFTDFSDYLDKIDATACNKRVTDSLIKAGAFDSLGHPRKGLNLIHEDAVDAVTSTKKAAA 948

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPI 974
                ++FA      S++ T + F VE     ++       E+ +LG Y SGHPLD ++  
Sbjct: 949  KGQFDLFA----GLSEEETGDAFKVEVPDQEWDRKHALTLEKEMLGLYVSGHPLDGFEAS 1004

Query: 975  L 975
            L
Sbjct: 1005 L 1005


>gi|255971496|ref|ZP_05422082.1| DNA polymerase III alpha subunit [Enterococcus faecalis T1]
 gi|255974111|ref|ZP_05424697.1| DNA polymerase III alpha subunit [Enterococcus faecalis T2]
 gi|256617966|ref|ZP_05474812.1| DNA polymerase III alpha subunit [Enterococcus faecalis ATCC 4200]
 gi|257089451|ref|ZP_05583812.1| DNA polymerase III alpha subunit [Enterococcus faecalis CH188]
 gi|307275526|ref|ZP_07556668.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX2134]
 gi|307278911|ref|ZP_07559971.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0860]
 gi|312904606|ref|ZP_07763764.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0635]
 gi|312952684|ref|ZP_07771546.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0102]
 gi|21314374|gb|AAM46913.1|AF508326_1 DNA polymerase III E [Enterococcus faecalis]
 gi|255962514|gb|EET94990.1| DNA polymerase III alpha subunit [Enterococcus faecalis T1]
 gi|255966983|gb|EET97605.1| DNA polymerase III alpha subunit [Enterococcus faecalis T2]
 gi|256597493|gb|EEU16669.1| DNA polymerase III alpha subunit [Enterococcus faecalis ATCC 4200]
 gi|256998263|gb|EEU84783.1| DNA polymerase III alpha subunit [Enterococcus faecalis CH188]
 gi|306504393|gb|EFM73603.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0860]
 gi|306507914|gb|EFM77042.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX2134]
 gi|310629200|gb|EFQ12483.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0102]
 gi|310632119|gb|EFQ15402.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0635]
 gi|315153119|gb|EFT97135.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0031]
 gi|315577423|gb|EFU89614.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0630]
          Length = 1109

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 338/1038 (32%), Positives = 544/1038 (52%), Gaps = 68/1038 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +      +G +       ++L     +GYQ+L++L S   +  +G   +
Sbjct: 62   IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
                S L +     L  +T  + G + + FF +  Q        F++L  + D   + ++
Sbjct: 110  AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244
                 ++ R   +       +LP VA      L+ E+  A  VL ++  +    + SQ  
Sbjct: 161  HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219

Query: 245  RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             P +   +YL+       +M+ I     E ++NT+++A  C   + +H  +LP F     
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAGS--EVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D Q    + LR+  +  L  R+        +  + Y++RL+ EL +I  M F  YFLIV
Sbjct: 274  PDNQTAG-SYLRSLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+
Sbjct: 326  WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +P
Sbjct: 386  DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L 
Sbjct: 446  NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+ +   +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+
Sbjct: 505  NLVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLN 563

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI 
Sbjct: 564  QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            V+  RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ K
Sbjct: 624  VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++
Sbjct: 684  KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I + 
Sbjct: 744  KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +++KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +
Sbjct: 804  FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863

Query: 898  RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R QL   L+ NIQ     +     +  E +   E          E+ +      R E E+
Sbjct: 864  RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015
            + LG Y SGHP + +K    K  +    + V  +  N   +L   V + +  +T+KG ++
Sbjct: 912  QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +         FP
Sbjct: 968  AFVDGDDTTGSISLTLFP 985


>gi|305681335|ref|ZP_07404142.1| DNA polymerase III subunit alpha [Corynebacterium matruchotii ATCC
            14266]
 gi|305659540|gb|EFM49040.1| DNA polymerase III subunit alpha [Corynebacterium matruchotii ATCC
            14266]
          Length = 1203

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 335/1015 (33%), Positives = 526/1015 (51%), Gaps = 57/1015 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  SFVHL  H+ YS+L+G   ++ + ++       A+ +TD  N+F +  F +    
Sbjct: 18   MAKKSSFVHLHNHTEYSMLDGMAKIDMLAEEATRLGMSAVGMTDHGNMFGSDSFYRAMTK 77

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQ------GKTPFPTVPSIVL----LVSTAEGYQRLIE 114
            AGI+PIIG +  +       M  Q       K+   +     L    +  TAEG   L  
Sbjct: 78   AGIKPIIGIEAYLAPGSRFDMKRQRWGDESQKSDDVSASGAYLHQTMIAETAEGLHNLFY 137

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E  T G+I  TG  SG I           A +    +
Sbjct: 138  LSSMASYEGQLGKWPRMDAELIAEHAT-GIIGTTGCPSGDIQTRLRLGQFDKALETAAMW 196

Query: 175  KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++G D  ++ L  H    +    S+++++    +LP + TN+  ++ E    AH+V++
Sbjct: 197  QDIYGRDNFFLELMDHGLNIENRVRSELLEIGRKLDLPPLVTNDCHYVLESQAHAHEVML 256

Query: 233  AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRC---SFILQV 287
             V     +S  DR +     +++K+  +M  ++ DL P+A +NT+ IA R    S I + 
Sbjct: 257  CVQTGKTMSDPDRFKFDGTGYFVKSAEQMRELWDDLVPDACDNTLWIAERVQDYSSIWEA 316

Query: 288  HAPILPRFIEKECDDIQKEEE--NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            H      +      D+ +       LR++ + GL  R     +       +Y +R ++E+
Sbjct: 317  HP-----YDRMPIADVPEGHTPTTWLRHQVLDGLRDRFDGAEVPA-----NYIERAEYEI 366

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VI    +  YFLIVA+ I+ A+   I VGPGRGS AGS+ AYALTIT+IDP+   LLFE
Sbjct: 367  GVIDMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGSLVAYALTITNIDPIHHGLLFE 426

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R S PD DIDF   RR E+IRY   ++G +++AQ+ITFG+++ K A++D  RAL
Sbjct: 427  RFLNPERPSAPDIDIDFDDRRRGEMIRYASERWGEDKIAQVITFGTVKTKQAIKDSARAL 486

Query: 466  --QMPYSQVDRLCKLIPND-PAHPVSLQAIAD--DSRFREAR------LADPSVDRLLEI 514
              Q  Y   DR+ K++P    A  +SL  I D    R+ EA         DP V ++ + 
Sbjct: 487  YGQPGYQIADRITKVLPPPIMAKDISLAGIMDPEHDRYTEAGEVRQLIETDPDVRQIYDT 546

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++ LEG+ R A  HA  +++   PL   +PM++       +T +     E  GL+K DFL
Sbjct: 547  ARGLEGVVRQAGVHACAVIMASVPLLDCIPMWKRAADGALITGWPYPACEAIGLLKMDFL 606

Query: 575  GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT++  +L+ +   R   +DL  +   D   Y LL    TLG+FQL+S GM++ L+
Sbjct: 607  GLRNLTVIGDALENIKINRDETIDLENLAITDPNVYKLLARGDTLGVFQLDSGGMQELLK 666

Query: 634  GMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQG 687
             MQP    DI+A ++LYRPGP  ++  + Y +RKNG++ I  IHP ++  LK    ET G
Sbjct: 667  RMQPTEFNDIVAALALYRPGPMGVNAHLDYADRKNGRKPITPIHPELEEALKDILDETYG 726

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQ+M+I++ ++ Y+  EAD  R+AMGKK  E +  + E+F +G   NG SK    
Sbjct: 727  LIVYQEQIMEISRRVANYTAGEADGFRKAMGKKKPEVLAAEYEKFSAGMFSNGYSKDAVD 786

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++  +  FA Y FNKSHAA Y ++SY TA++K +Y  E++AA +T   D  +K   +  
Sbjct: 787  ALWGTIEPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVSDKKDKSAIYLA 846

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLE 866
            + R   I ++ P VN    +F      I + L A++ VG      I+ E  A   +    
Sbjct: 847  NCRHLGIAVLSPDVNESAYNFLPVGQDIRFGLGAVRNVGEDVVASIVRERKAKGLYKDFT 906

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            D+  ++D    N+RV ESL+ AGA D  GYSR  L+   ++    A   +K       ++
Sbjct: 907  DYLEKIDLTACNKRVTESLIKAGAFDSMGYSRKGLMMVFEDAVDAAIGPKKAMDKGQFDL 966

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPIL 975
            F+   G    ++T   FS+      ++       E+ +LG Y SGHPLD ++  L
Sbjct: 967  FSALGG--ESEVTENVFSISVPDDTWDRKHQLALERDMLGLYVSGHPLDGFEEAL 1019


>gi|229548984|ref|ZP_04437709.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|257421291|ref|ZP_05598281.1| DNA polymerase III subunit alpha [Enterococcus faecalis X98]
 gi|229306005|gb|EEN72001.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|257163115|gb|EEU93075.1| DNA polymerase III subunit alpha [Enterococcus faecalis X98]
 gi|315156892|gb|EFU00909.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0043]
 gi|315157679|gb|EFU01696.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0312]
          Length = 1109

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 338/1038 (32%), Positives = 544/1038 (52%), Gaps = 68/1038 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +      +G +       ++L     +GYQ+L++L S   +  +G   +
Sbjct: 62   IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
                S L +     L  +T  + G + + FF +  Q        F++L  + D   + ++
Sbjct: 110  AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244
                 ++ R   +       +LP VA      L+ E+  A  VL ++  +    + SQ  
Sbjct: 161  HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219

Query: 245  RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             P +   +YL+       +M+ I     E ++NT+++A  C   + +H  +LP F     
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAGS--EVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D Q    + LR+  +  L  R+        +  + Y++RL+ EL +I  M F  YFLIV
Sbjct: 274  PDNQTAG-SYLRSLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+
Sbjct: 326  WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +P
Sbjct: 386  DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L 
Sbjct: 446  NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+ +   +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+
Sbjct: 505  NLVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLN 563

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI 
Sbjct: 564  QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            V+  RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ K
Sbjct: 624  VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++
Sbjct: 684  KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I + 
Sbjct: 744  KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +++KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +
Sbjct: 804  FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863

Query: 898  RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R QL   L+ NIQ     +     +  E +   E          E+ +      R E E+
Sbjct: 864  RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015
            + LG Y SGHP + +K    K  +    + V  +  N   +L   V + +  +T+KG ++
Sbjct: 912  QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELFENQPTKLLIYVKNIRTIRTKKGEQM 967

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +         FP
Sbjct: 968  AFVDGDDTTGSISLTLFP 985


>gi|213965246|ref|ZP_03393443.1| DNA polymerase III, alpha subunit [Corynebacterium amycolatum SK46]
 gi|213952098|gb|EEB63483.1| DNA polymerase III, alpha subunit [Corynebacterium amycolatum SK46]
          Length = 1185

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 338/1032 (32%), Positives = 542/1032 (52%), Gaps = 84/1032 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+G   ++ + D++A    PA+ +TD  N+F +  F ++  + GI+P
Sbjct: 5    SFVHLHNHTEYSMLDGMAKIDLLADEVARQGMPAVGVTDHGNMFGSNAFYRQMKSKGIKP 64

Query: 70   IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSRM 119
            IIG +  +  +    K   Q   P      +          +L + A+G + L  L S  
Sbjct: 65   IIGIEAYMAPESRFNKKRIQWGEPHQRRDDVSGRGSYLHQTMLAANAQGLRNLFYLSSMA 124

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
                Q  +  R+    + E   EG+I  TG  SG +           A +    ++ ++G
Sbjct: 125  SYEGQISKYPRMDAELVAER-AEGIIATTGCPSGDVQTRLRLGQFDEALQAAGMWQDIYG 183

Query: 180  -DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             +  ++ L  H G D   R R S+++++     LP + TN+  +++ +  +AH+ ++ V 
Sbjct: 184  KENYFLELMDH-GLDIETRVR-SELLEIGRKLNLPPLVTNDCHYVTRDQAKAHEAMLCVQ 241

Query: 236  HSTVVSQKDRPRVTPDHY-LKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILP 293
                ++  DR +   D Y +K+  EM + +  L P A +NT+ IA R     ++      
Sbjct: 242  TGKTLNDPDRFKFDGDGYFIKSAEEMRATWDHLVPGACDNTLLIAERVEDYDEL------ 295

Query: 294  RFIEKECDDIQKEEENE-------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
             + E   D + K +  E       L +  + GL  R     +      ++Y +R ++E+ 
Sbjct: 296  -WEEHPHDRMPKADVPEGETPTTWLHHNVMEGLRKRFEGREVP-----EEYIRRAEYEIE 349

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI    +  YFLIVA+ I+ A++  I VGPGRGS AGS+ AYA  IT+IDP+   LLFER
Sbjct: 350  VIDGKGYPSYFLIVAELIRHAREVGIKVGPGRGSAAGSLVAYATWITNIDPIEHGLLFER 409

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL- 465
            FLNP+R S PD DIDF   RRDE+IRY  +++G ++VAQ++TFG+++ K AL+D  R   
Sbjct: 410  FLNPERPSAPDIDIDFDDRRRDEMIRYAADRWGEDKVAQVVTFGTVKTKQALKDSARVQF 469

Query: 466  -QMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRL 511
             Q  Y   DR+ K +P              DP HP   +A    +  R+    DP V R+
Sbjct: 470  GQPGYQIADRITKALPPAIMAKDIPLGGIVDPEHPRYGEA----AEVRQLIETDPDVARI 525

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
             E ++ LEG+ R    HA  +V+   PL   +PM++       +T ++    E  GL+K 
Sbjct: 526  YETARGLEGVVRQTGVHACAVVMASVPLMDHIPMWKRQADGAIITGWDYPACEAIGLLKM 585

Query: 572  DFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            DFLGL+ LT++   ++ + + RG  V L  +  DD + Y LL+   TLG+FQL+  GMR+
Sbjct: 586  DFLGLRNLTVIGDCIEHIKSNRGETVLLDDLQTDDPKVYELLSRGDTLGVFQLDGGGMRE 645

Query: 631  ALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE---- 684
             L+ MQP   +DI+A ++LYRPGP  ++    Y + KNG++   +IH  +D  LKE    
Sbjct: 646  LLKRMQPTGFDDIVASLALYRPGPMGVNAHFDYADIKNGRKPYNAIHAELDEQLKEILEE 705

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+I+YQEQ+M+I+Q L+ Y+  +AD  R+AMGKK  E + K+   F  G  +NG SK 
Sbjct: 706  THGLIVYQEQIMKISQKLANYTAGQADGFRKAMGKKKPEVLAKEFVNFEGGMLENGYSKD 765

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
                +++++  FA Y FNKSHAA Y ++SY TA++K +Y  E++AA +T   D+  K+  
Sbjct: 766  AVQKLWDIILPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVADDKNKLAI 825

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFD 863
            +  D R   I+++PP VN   +DF+     I + L AI+ VG      I++   +K  F 
Sbjct: 826  YLSDCRHLGIKVLPPDVNESGMDFEPVGEDIRFGLGAIRNVGHDVVASIVKTREEKGKFT 885

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNR 919
            S  D+  ++++   N+R+ ESL+ AGA D  G+ R  L     +++D++    +  +K +
Sbjct: 886  SFSDYLDKIETLPCNKRITESLIKAGAFDSLGHPRKGLALIHEEAIDSVLSTKKAADKGQ 945

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE--NEQRVLGFYFSGHPLDVYKPILRK 977
             +     F  ++ T S+ I   +   E    + E   E+ +LG Y SGHPLD        
Sbjct: 946  FDLFAG-FGGDEDTGSESIFEIRVPDEKWDRKHELTLEREMLGLYVSGHPLD-------- 996

Query: 978  MGIKGYEESVAT 989
                G+EES+A 
Sbjct: 997  ----GFEESLAA 1004


>gi|29375623|ref|NP_814777.1| DNA polymerase III, alpha subunit [Enterococcus faecalis V583]
 gi|227555152|ref|ZP_03985199.1| DNA polymerase III, alpha subunit [Enterococcus faecalis HH22]
 gi|257418632|ref|ZP_05595626.1| DNA polymerase III alpha subunit [Enterococcus faecalis T11]
 gi|29343084|gb|AAO80847.1| DNA polymerase III, alpha subunit [Enterococcus faecalis V583]
 gi|227175736|gb|EEI56708.1| DNA polymerase III, alpha subunit [Enterococcus faecalis HH22]
 gi|257160460|gb|EEU90420.1| DNA polymerase III alpha subunit [Enterococcus faecalis T11]
 gi|315574296|gb|EFU86487.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0309B]
 gi|315581632|gb|EFU93823.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0309A]
 gi|327534630|gb|AEA93464.1| DNA-directed DNA polymerase III alpha subunit [Enterococcus faecalis
            OG1RF]
          Length = 1109

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 338/1038 (32%), Positives = 543/1038 (52%), Gaps = 68/1038 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +      +G +       ++L     +GYQ+L++L S   +  +G   +
Sbjct: 62   IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
                S L +     L  +T  + G + + FF +  Q        F++L  + D   + ++
Sbjct: 110  AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244
                 ++ R   +       +LP VA      L+ E+  A  VL ++  +    + SQ  
Sbjct: 161  HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219

Query: 245  RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             P +   +YL+       +M+ I     E ++NT+++A  C   + +H  +LP F     
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D Q    + LR   +  L  R+        +  + Y++RL+ EL +I  M F  YFLIV
Sbjct: 274  PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+
Sbjct: 326  WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +P
Sbjct: 386  DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L 
Sbjct: 446  NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+ +   +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+
Sbjct: 505  NLVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLN 563

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI 
Sbjct: 564  QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            V+  RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ K
Sbjct: 624  VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++
Sbjct: 684  KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I + 
Sbjct: 744  KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +++KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +
Sbjct: 804  FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863

Query: 898  RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R QL   L+ NIQ     +     +  E +   E          E+ +      R E E+
Sbjct: 864  RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015
            + LG Y SGHP + +K    K  +    + V  +  N   +L   V + +  +T+KG ++
Sbjct: 912  QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +         FP
Sbjct: 968  AFVDGDDTTGSISLTLFP 985


>gi|260584014|ref|ZP_05851762.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
            700633]
 gi|260158640|gb|EEW93708.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
            700633]
          Length = 1112

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 332/1042 (31%), Positives = 550/1042 (52%), Gaps = 89/1042 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQV S YSLL   + L   +          +A+TD   L  A+EF        I+P
Sbjct: 2    TFTILQVTSGYSLLRSTIDLYRYVMTAKELGYQKLALTDEGVLHGAIEFYNLCRNQNIEP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC        N +             S+++      GYQ LIEL ++     Q  + V
Sbjct: 62   IIGCLFQYKQWRNAE----------AFSSMIVYAKDEIGYQSLIELSTQY----QKSKLV 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               +  + +  +E L ++    +   + A   ++ +VA +R L   +   +R + N+  H
Sbjct: 108  SKDMEKIIKEASEHLQIVFPQENS--EWALECSNGEVAFQRWLFEAE---ERYFPNI--H 160

Query: 190  RGYDRYRESQVVQL------AYTHE-----LPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             G +    +Q++ +      A+  +     LP V T    +L  ED  ++ VL A+    
Sbjct: 161  LGIE---SNQILPIPLEELEAWGQDFSMKLLPFVKT---FYLKAEDDFSYRVLKAIGDGE 214

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAPILPRFI 296
             +S   +  V+  +YL++   +    S + E   +    E      + L  H  +LP+F 
Sbjct: 215  TLS-TTQAEVSGQYYLQDEKTLTQQSSTILEGKLVRQLEEFVDSLKWKLSKHKLLLPKFQ 273

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E   + +E   E+  +++   E+              +Y  RL++EL++I +M F  Y
Sbjct: 274  TPE-GKMSQEYLQEICQQSLKDKELV-----------KDEYESRLNYELSIIHQMGFDDY 321

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV D +++A +  I  GPGRGS AGS+ +Y L IT +DP+ + LLFERFLNP+R +MP
Sbjct: 322  FLIVWDIMKYAHEAGIQTGPGRGSAAGSLVSYLLNITKVDPIEYQLLFERFLNPERYTMP 381

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  +RR++++ YV+ KYG   VAQI TFG+  +K ALRDV R L +   Q     
Sbjct: 382  DIDLDFPDNRREDILDYVRRKYGENHVAQIATFGTFGSKQALRDVCRVLGLTTVQAGEWS 441

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K IPN     ++L+   + S+  +  ++  P    + E + ++EGL RH STHAAG+V+ 
Sbjct: 442  KAIPNQLG--INLKTAYEQSKNLQTLVSRSPKNQLIFETACRIEGLPRHLSTHAAGVVLY 499

Query: 536  DRPLSQLVPM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
            D+PL+ ++P+ Y+D    +P+TQ+ MK++E+ GL+K DFLGL  L++L  S++       
Sbjct: 500  DKPLTDVIPLIYKD--QQMPITQYTMKYVEQIGLLKMDFLGLTNLSILHDSIELTKSIYQ 557

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             ++ L+ IP DD +T  L     T GIFQ ES G+R+ L+ ++P  +EDI A+ +LYRPG
Sbjct: 558  HEIILNEIPLDDEKTLELFQMADTNGIFQFESDGIRRVLKKLRPTNLEDIAAVNALYRPG 617

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P++ I  +  RK+G+E +   HP+++ +L+ T GV++YQEQVMQ+   ++G++L +AD+L
Sbjct: 618  PMEQIDTFIKRKHGQEVVKYPHPILESILQSTYGVMVYQEQVMQVTSQMAGFTLGQADIL 677

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRA+GKK  + ++ +K  FI GA   GI    A  +++ + +FA+YGFN+SHA AY++++
Sbjct: 678  RRAIGKKDAKVIETEKAHFIEGAIGKGIDVASATEVYQYIERFANYGFNRSHAFAYSLLA 737

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQ A+ K HYP  F  A +    D   K++ +  +A+Q  I I  PS+NT   D+    +
Sbjct: 738  YQLAYFKAHYPRAFYTAILRFVGDRSPKLQTYFIEAKQRGISIKNPSINTSVDDYTATID 797

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I+  L AIKG+     + I+ +   + PF    DF  R+  +   + VLE+L+ AGA D
Sbjct: 798  GIFIGLNAIKGLRRDFIQEILTQRKQNGPFIDFMDFAFRIGKRYCKKEVLEALIDAGAFD 857

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-- 950
              G +R  L  ++D + +  ++        H +  A E    ++++  + F  E+S++  
Sbjct: 858  ELGKNRATLRATIDAVIESVKF--------HGSNIALE---LNEEMYPKYFEEEDSNIIE 906

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKG----YEESVATIRG--NNIRLAAMVVSK 1004
            + E E  VLGF  S  P + Y+ + ++         YE  + ++ G   NIR        
Sbjct: 907  KIEREIAVLGFPVSAFPTEPYEILYKEQKANRISTIYESKLVSVLGILKNIR-------- 958

Query: 1005 QQKKTRKGSRIGWVTFSEPAKE 1026
             + +T+KG  + + T  +   E
Sbjct: 959  -KTRTKKGEPMAFGTIQDETGE 979


>gi|256761801|ref|ZP_05502381.1| DNA polymerase III alpha subunit [Enterococcus faecalis T3]
 gi|256957134|ref|ZP_05561305.1| DNA polymerase III alpha subunit [Enterococcus faecalis DS5]
 gi|257086401|ref|ZP_05580762.1| DNA polymerase III alpha subunit [Enterococcus faecalis D6]
 gi|294779297|ref|ZP_06744701.1| DNA polymerase III, alpha subunit [Enterococcus faecalis PC1.1]
 gi|307269669|ref|ZP_07551002.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX4248]
 gi|256683052|gb|EEU22747.1| DNA polymerase III alpha subunit [Enterococcus faecalis T3]
 gi|256947630|gb|EEU64262.1| DNA polymerase III alpha subunit [Enterococcus faecalis DS5]
 gi|256994431|gb|EEU81733.1| DNA polymerase III alpha subunit [Enterococcus faecalis D6]
 gi|294453664|gb|EFG22062.1| DNA polymerase III, alpha subunit [Enterococcus faecalis PC1.1]
 gi|306513997|gb|EFM82588.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX4248]
 gi|315027021|gb|EFT38953.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX2137]
 gi|315031757|gb|EFT43689.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0017]
 gi|315034170|gb|EFT46102.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0027]
 gi|315171981|gb|EFU15998.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX1342]
 gi|323480286|gb|ADX79725.1| DNA polymerase III subunit alpha [Enterococcus faecalis 62]
          Length = 1109

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 338/1038 (32%), Positives = 542/1038 (52%), Gaps = 68/1038 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +      +G +       ++L     +GYQ+L++L S   +  +G   +
Sbjct: 62   IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
                S L +     L  +T  + G + + FF +  Q        F++L  + D   + ++
Sbjct: 110  AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244
                 ++ R   +       +LP VA      L+ E+  A  VL ++  +    + SQ  
Sbjct: 161  HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219

Query: 245  RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             P +   +YL+       +M+ I     E ++NT+++A  C   + +H  +LP F     
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D Q    + LR   +  L  R+        +  + Y++RL+ EL +I  M F  YFLIV
Sbjct: 274  PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+
Sbjct: 326  WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +P
Sbjct: 386  DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L 
Sbjct: 446  NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+     +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+
Sbjct: 505  NLVPLQLG-SNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLN 563

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI 
Sbjct: 564  QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            V+  RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ K
Sbjct: 624  VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++
Sbjct: 684  KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I + 
Sbjct: 744  KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +++KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +
Sbjct: 804  FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863

Query: 898  RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R QL   L+ NIQ     +     +  E +   E          E+ +      R E E+
Sbjct: 864  RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015
            + LG Y SGHP + +K    K  +    + V  +  N   +L   V + +  +T+KG ++
Sbjct: 912  QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +         FP
Sbjct: 968  AFVDGDDTTGSISLTLFP 985


>gi|256960227|ref|ZP_05564398.1| DNA polymerase III alpha subunit [Enterococcus faecalis Merz96]
 gi|293382589|ref|ZP_06628522.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|293387817|ref|ZP_06632359.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|312906805|ref|ZP_07765802.1| putative DNA polymerase III DnaE [Enterococcus faecalis DAPTO 512]
 gi|312978940|ref|ZP_07790666.1| putative DNA polymerase III DnaE [Enterococcus faecalis DAPTO 516]
 gi|256950723|gb|EEU67355.1| DNA polymerase III alpha subunit [Enterococcus faecalis Merz96]
 gi|291080032|gb|EFE17396.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|291082792|gb|EFE19755.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|310627059|gb|EFQ10342.1| putative DNA polymerase III DnaE [Enterococcus faecalis DAPTO 512]
 gi|311288377|gb|EFQ66933.1| putative DNA polymerase III DnaE [Enterococcus faecalis DAPTO 516]
          Length = 1109

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 338/1038 (32%), Positives = 543/1038 (52%), Gaps = 68/1038 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +      +G +       ++L     +GYQ+L++L S   +  +G   +
Sbjct: 62   IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
                S L +     L  +T  + G + + FF +  Q        F++L  + D   + ++
Sbjct: 110  AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244
                 ++ R   +       +LP VA      L+ E+  A  VL ++  +    + SQ  
Sbjct: 161  HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219

Query: 245  RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             P +    YL+       +M+ I     E ++NT+++A  C   + +H  +LP F     
Sbjct: 220  -PEIEGLDYLREAETTMEQMLQIAGS--EVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D Q    + LR+  +  L  R+        +  + Y++RL+ EL +I  M F  YFLIV
Sbjct: 274  PDNQTAG-SYLRSLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+
Sbjct: 326  WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +P
Sbjct: 386  DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L 
Sbjct: 446  NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+ +   +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+
Sbjct: 505  NLVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLN 563

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI 
Sbjct: 564  QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            V+  RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ K
Sbjct: 624  VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++
Sbjct: 684  KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I + 
Sbjct: 744  KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +++KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +
Sbjct: 804  FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863

Query: 898  RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R QL   L+ NIQ     +     +  E +   E          E+ +      R E E+
Sbjct: 864  RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015
            + LG Y SGHP + +K    K  +    + V  +  N   +L   V + +  +T+KG ++
Sbjct: 912  QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +         FP
Sbjct: 968  AFVDGDDTTGSISLTLFP 985


>gi|295398598|ref|ZP_06808630.1| DNA-directed DNA polymerase III alpha subunit [Aerococcus viridans
            ATCC 11563]
 gi|294973199|gb|EFG48994.1| DNA-directed DNA polymerase III alpha subunit [Aerococcus viridans
            ATCC 11563]
          Length = 1162

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 336/1048 (32%), Positives = 544/1048 (51%), Gaps = 63/1048 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L V+S+YSLL   +S+   +   A      + + D N +  +L F +     GI P+
Sbjct: 2    FVPLHVNSAYSLLTSPMSVEAYVQAGATAGYTHLGLADVNVMSGSLAFVRACEQNGITPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  +  ++ DN+K              +V+     EGYQ L+ L S + L  Q + + R
Sbjct: 62   IGLTVQFNI-DNVK------------EELVVYAKNYEGYQHLMALSSSLKL--QAEANRR 106

Query: 131  ICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQV----AEKRLLTFKKLFGD-RLY 183
                  QEI    +  I++    +GP  R       Q      E+ LL +++ F D +L+
Sbjct: 107  AIY---QEITMHADDYIVIFSAMTGPHMRYLKQGDGQADYDQLEEELLWWRRHFSDDQLF 163

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            + L      +++    +++L+    +PLVA  +  + + +D+    VL A+ ++  ++  
Sbjct: 164  LGLSALEN-EQFHAKAIIELSEQSGVPLVAMPHIQYANPDDFFTQQVLEAIDNNKPMTGI 222

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSD-------LPEALENTVEIARRCSFILQVHAPILPRF 295
            D   +V   H L+N  +   ++ D         ++L+      +    +      +LP++
Sbjct: 223  DELKQVKGSHALRNPDQWAKMYQDPDDQDSVYKDSLDRLEVAVKGIDIVFPQIETLLPKY 282

Query: 296  -IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
             +  E     K     L++ A AGL  R+A    A       Y  RL +EL+VI  M F 
Sbjct: 283  PLPSEYTATPKY----LKDLAEAGLVKRVANITDA-------YTDRLAYELSVIHDMGFD 331

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFLIV D + +A +++I  GPGRGS AG++ AY L ITD+DP+   LLFERFLNPDR +
Sbjct: 332  DYFLIVWDVMNYAHQHHIQTGPGRGSAAGALVAYVLEITDVDPIANDLLFERFLNPDRQN 391

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD D+DF  ++R EV+ YV  KYG   VAQI TFG+  A+ ALR+VG         +  
Sbjct: 392  MPDIDLDFPDNKRQEVLDYVYRKYGDNHVAQIATFGTFGARQALRNVGSVFGKAQVTLSE 451

Query: 475  LCKLIPNDPAHPV-SLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
                + N+P  P  +L ++ D S + RE    +       + ++KLEGL RH STHAAG+
Sbjct: 452  WANTVGNNPNLPAETLTSVYDQSQKLRELIENEDHGQLWFDTARKLEGLPRHVSTHAAGV 511

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI D+PL+   P+ +   + +P TQ+ M  +E  GL+K DFL L  LT+L   L  + + 
Sbjct: 512  VIADQPLTLHTPL-QASSTHIPNTQYTMGDVEAVGLLKVDFLSLSNLTILHDGLAAVGKL 570

Query: 593  GVKVDLSL-IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
              +   +L IP DD +TY +     T G+FQ ES G++  L+ + P  IED++A+ +LYR
Sbjct: 571  TSRPVKALDIPLDDPKTYEIFQHADTNGVFQFESDGIKNVLKQVAPTSIEDVVAVNALYR 630

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+  I  +  RK+G+E I   HP + P+L  T G+++YQEQVMQ+ Q ++G+SL EAD
Sbjct: 631  PGPVQQIPHFVARKHGREAIAYPHPDLAPILAPTYGIMVYQEQVMQVTQKIAGFSLGEAD 690

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRA+GKK  E ++  +++FISGA +NG  +++AV I++ +  FA+YGFNKSH+ AY+ 
Sbjct: 691  ILRRAIGKKKHETIENVRKQFISGAIENGYQESVAVQIYDYIEAFANYGFNKSHSFAYSY 750

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-V 830
            ++YQ AW+K +YPV F   ++       +K K    +A+   ++++ P +N        V
Sbjct: 751  LAYQLAWIKANYPVAFYYGNLKHTRIYDKKGKNLVLEAKNHGVEVVNPDINKSFYGLSVV 810

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D+++   L  I+G+       +++A  A+ PF    DF  R+    L   +L  L  AG
Sbjct: 811  DDHQLQLGLGDIRGIPKRAVEEMIQAREAEGPFKDFTDFIHRLGKLALKEDILVKLAQAG 870

Query: 890  ALDCFGYSRMQL-LQSLDNIQKYAQWVEKNRTNKHENIFAHE--KGTFSDKIT-LEKFSV 945
            ALD FGY+R  L L+++  +  + Q   K    +  ++   +     F+ KI  +++F  
Sbjct: 871  ALDSFGYNRRTLQLEAIPKMITHEQLF-KTDNQRQTSLLGDDDLSAMFAPKIVEIDEF-- 927

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +     ENE   LG   S    + Y+    + GI  Y E++     +       V++ +
Sbjct: 928  -DQHQLIENEIETLGQALSISLFEDYEG-FYQTGIIDYIENLK--ENSKAFFLGEVIAVK 983

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  T+K   + +VT  +   +     FP
Sbjct: 984  RITTKKNQPMAFVTVKDQTGQISVTAFP 1011


>gi|256962530|ref|ZP_05566701.1| DNA polymerase III alpha subunit [Enterococcus faecalis HIP11704]
 gi|307272063|ref|ZP_07553328.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0855]
 gi|256953026|gb|EEU69658.1| DNA polymerase III alpha subunit [Enterococcus faecalis HIP11704]
 gi|306511283|gb|EFM80288.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0855]
          Length = 1109

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 338/1038 (32%), Positives = 543/1038 (52%), Gaps = 68/1038 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEVCQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +      +G +       ++L     +GYQ+L++L S   +  +G   +
Sbjct: 62   IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
                S L +     L  +T  + G + + FF +  Q        F++L  + D   + ++
Sbjct: 110  AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244
                 ++ R   +       +LP VA      L+ E+  A  VL ++  +    + SQ  
Sbjct: 161  HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219

Query: 245  RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             P +   +YL+       +M+ I     E ++NT+++A  C   + +H  +LP F     
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D Q    + LR   +  L  R+        +  + Y++RL+ EL +I  M F  YFLIV
Sbjct: 274  PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+
Sbjct: 326  WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +P
Sbjct: 386  DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L 
Sbjct: 446  NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+ +   +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+
Sbjct: 505  NLVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLN 563

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI 
Sbjct: 564  QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            V+  RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ K
Sbjct: 624  VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++
Sbjct: 684  KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I + 
Sbjct: 744  KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +++KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +
Sbjct: 804  FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863

Query: 898  RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R QL   L+ NIQ     +     +  E +   E          E+ +      R E E+
Sbjct: 864  RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015
            + LG Y SGHP + +K    K  +    + V  +  N   +L   V + +  +T+KG ++
Sbjct: 912  QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +         FP
Sbjct: 968  AFVDGDDTTGSISLTLFP 985


>gi|225021950|ref|ZP_03711142.1| hypothetical protein CORMATOL_01982 [Corynebacterium matruchotii ATCC
            33806]
 gi|224945236|gb|EEG26445.1| hypothetical protein CORMATOL_01982 [Corynebacterium matruchotii ATCC
            33806]
          Length = 1203

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 335/1015 (33%), Positives = 525/1015 (51%), Gaps = 57/1015 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  SFVHL  H+ YS+L+G   ++ + ++       A+ +TD  N+F +  F +    
Sbjct: 18   MAKKSSFVHLHNHTEYSMLDGMAKIDMLAEEATRLGMSAVGMTDHGNMFGSDSFYRAMTK 77

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQ------GKTPFPTVPSIVL----LVSTAEGYQRLIE 114
            AGI+PIIG +  +       M  Q       K+   +     L    +  TAEG   L  
Sbjct: 78   AGIKPIIGIEAYLAPGSRFDMKRQRWGDESQKSDDVSASGAYLHQTMIAETAEGLHNLFY 137

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E  T G+I  TG  SG I           A +    +
Sbjct: 138  LSSMASYEGQLGKWPRMDAELIAEHAT-GIIGTTGCPSGDIQTRLRLGQFDKALETAAMW 196

Query: 175  KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++G D  ++ L  H    +    S+++++    +LP + TN+  ++ E    AH+V++
Sbjct: 197  QDIYGRDNFFLELMDHGLNIENRVRSELLEIGRRLDLPPLVTNDCHYVLESQAHAHEVML 256

Query: 233  AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRC---SFILQV 287
             V     +S  DR +     +++K+  +M  ++ DL P+A +NT+ IA R    S I + 
Sbjct: 257  CVQTGKTMSDPDRFKFDGTGYFVKSAEQMRELWDDLVPDACDNTLWIAERVQDYSSIWEA 316

Query: 288  HAPILPRFIEKECDDIQKEEE--NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            H      +      D+ +       LR++ + GL  R     +       +Y +R ++E+
Sbjct: 317  HP-----YDRMPIADVPEGHTPTTWLRHQVLDGLRDRFDGAEVPA-----NYIERAEYEI 366

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VI    +  YFLIVA+ I+ A+   I VGPGRGS AGS+ AYALTIT+IDP+   LLFE
Sbjct: 367  GVIDMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGSLVAYALTITNIDPIHHGLLFE 426

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R S PD DIDF   RR E+IRY   ++G +++AQ+ITFG+++ K A++D  RAL
Sbjct: 427  RFLNPERPSAPDIDIDFDDRRRGEMIRYASERWGEDKIAQVITFGTVKTKQAIKDSARAL 486

Query: 466  --QMPYSQVDRLCKLIPND-PAHPVSLQAIAD--DSRFREAR------LADPSVDRLLEI 514
              Q  Y   DR+ K++P    A  +SL  I D    R+ EA         DP V ++ + 
Sbjct: 487  YGQPGYQIADRITKVLPPPIMAKDISLAGIMDPEHDRYTEAGEVRQLIETDPDVRQIYDT 546

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++ LEG+ R A  HA  +++   PL   +PM++       +T +     E  GL+K DFL
Sbjct: 547  ARGLEGVVRQAGVHACAVIMASVPLLDCIPMWKRAADGALITGWPYPACEAIGLLKMDFL 606

Query: 575  GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT++  +L+ +   R   +DL  +   D   Y LL    TLG+FQL+S GM++ L 
Sbjct: 607  GLRNLTVIGDALENIKINRDETIDLENLAITDPNVYKLLARGDTLGVFQLDSGGMQELLR 666

Query: 634  GMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQG 687
             MQP    DI+A ++LYRPGP  ++  + Y +RKNG++ I  IHP ++  LK    ET G
Sbjct: 667  RMQPTEFNDIVAALALYRPGPMGVNAHLDYADRKNGRKPITPIHPELEEALKDILDETYG 726

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQ+M+I++ ++ Y+  EAD  R+AMGKK  E +  + E+F +G   NG SK    
Sbjct: 727  LIVYQEQIMEISRRVANYTAGEADGFRKAMGKKKPEVLAAEYEKFSAGMFSNGYSKDAVD 786

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++  +  FA Y FNKSHAA Y ++SY TA++K +Y  E++AA +T   D  +K   +  
Sbjct: 787  ALWGTIEPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVSDKKDKSAIYLA 846

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLE 866
            + R   I ++ P VN    +F      I + L A++ VG      I+ E  A   +    
Sbjct: 847  NCRHLGIAVLSPDVNESAYNFLPVGQDIRFGLGAVRNVGEDVVASIVRERKAKGLYKDFT 906

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            D+  ++D    N+RV ESL+ AGA D  GYSR  L+   ++    A   +K       ++
Sbjct: 907  DYLEKIDLTACNKRVTESLIKAGAFDSMGYSRKGLMMVFEDAVDAAIGPKKAMDKGQFDL 966

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPIL 975
            F+   G    ++T   FS+      ++       E+ +LG Y SGHPLD ++  L
Sbjct: 967  FSALGG--ESEVTENVFSISVPDDTWDRKHQLALERDMLGLYVSGHPLDGFEEAL 1019


>gi|315173327|gb|EFU17344.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX1346]
          Length = 1109

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 338/1038 (32%), Positives = 543/1038 (52%), Gaps = 68/1038 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +      +G +       ++L     +GYQ+L++L S   +  +G   +
Sbjct: 62   IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
                S L +     L  +T  + G + + FF +  Q        F++L  + D   + ++
Sbjct: 110  AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244
                 ++ R   +       +LP VA      L+ E+  A  VL ++  +    + SQ  
Sbjct: 161  HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219

Query: 245  RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             P +   +YL+       +M+ I     E ++NT+++A  C   + +H  +LP F     
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D Q    + LR   +  L  R+        +  + Y++RL+ EL +I  M F  YFLIV
Sbjct: 274  PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+
Sbjct: 326  WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +P
Sbjct: 386  DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L 
Sbjct: 446  NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+ +   +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+
Sbjct: 505  NLVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLN 563

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP +D  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI 
Sbjct: 564  QIPLNDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            V+  RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ K
Sbjct: 624  VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D+++  F++GA + G  K  A  +++ + +FA+YGFN+SHA AY+ I +Q A++
Sbjct: 684  KKKDVLDEERNHFVNGALQQGYPKETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I + 
Sbjct: 744  KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +++KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +
Sbjct: 804  FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863

Query: 898  RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R QL   L+ NIQ     +     +  E +   E          E+ +      R E E+
Sbjct: 864  RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015
            + LG Y SGHP + +K    K  +    + V  +  N   +L   V + +  +T+KG ++
Sbjct: 912  QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +         FP
Sbjct: 968  AFVDGDDTTGSISLTLFP 985


>gi|300173404|ref|YP_003772570.1| DNA polymerase III subunit alpha [Leuconostoc gasicomitatum LMG
            18811]
 gi|299887783|emb|CBL91751.1| DNA polymerase III alpha subunit [Leuconostoc gasicomitatum LMG
            18811]
          Length = 1115

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 335/1035 (32%), Positives = 543/1035 (52%), Gaps = 81/1035 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQ+ S+YSLL+   ++  I++        AIA+TD N ++ A++F Q A    I+P+
Sbjct: 2    YAPLQILSAYSLLKNPNTIEQIIETAKKRHYQAIALTDINVMYGAVKFYQVAKENNIKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L ++          G     TV  IVL+     GYQ L+ + S        K + +
Sbjct: 62   FGVTLQVN----------GLVNTATVFPIVLIAENQTGYQNLMWISS-------AKMTTK 104

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE-------------KRLLTFKKL 177
            I    L         ++TG  +G      F N S++++             ++L+T  K+
Sbjct: 105  ISEMTLD--------VITGHLAGI--NIIFPNDSEISQFIASEYTQSVDYWQQLIT--KI 152

Query: 178  FGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
               +LY+ +          + ++V  +  ++  L+A +   +L+ +D     VL A+  +
Sbjct: 153  DPKKLYLGINPQLA--PQIQERLVTFSAKNQAKLIALDTVDYLNPDDAFTTQVLKAIETN 210

Query: 238  TVVSQ-KDRPRVTPDHYLKNRSEM-VSIFSD--LPEA-LENTVEIARRCSFILQVHAPIL 292
            T +   K   +    H L++  E+ ++  ++  L  A L N + +++    I+      L
Sbjct: 211  TKLDDIKLLAQQIGTHVLQDFDEVQIAYLANDALKTAYLNNELLVSKSQVEIVFKQTATL 270

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P+F      +  +  EN LR+ A  GL  R+    +A       Y +RL  EL +I  + 
Sbjct: 271  PKF---RLPNENQTSENYLRSIAEKGLLERINGRQVA----LDQYEKRLQHELQIIDNLA 323

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F+ YFLIV D + +A + NI +G GRGS AGS+ AYAL ITD+DP++F LLFERFLNP R
Sbjct: 324  FNDYFLIVWDIVNFAHQKNIQMGAGRGSAAGSLVAYALRITDVDPIQFGLLFERFLNPQR 383

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            + MPD DID+  ++RD ++ Y+ +KYG    AQI+TFG+L AK ALRD  R   +    +
Sbjct: 384  IQMPDIDIDWPDNKRDLILNYLHDKYGQRNFAQILTFGTLAAKQALRDTARVFGVSQQMM 443

Query: 473  DRLCKLIPNDP-AHPVSLQAIADDSRFREARLAD-PSVDRLLEISQKLEGLYRHASTHAA 530
             R+   +P       V +Q   + S      L+D  + + LL+++Q +EGL R+ STHAA
Sbjct: 444  SRISNAVPQGKQGRKVLIQDTLNASNVLRTVLSDVDNGELLLKVAQHIEGLPRNYSTHAA 503

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFL 589
            G+V+   PL   +P+ +    D  +TQF    +E  GL+K D LGL  L++L ++L D  
Sbjct: 504  GVVLSSEPLINTLPV-QSGSDDRLLTQFEKNPVEALGLLKIDILGLSNLSILAQTLYDAK 562

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
             Q     D+S IP DD +T  L     T G+FQ ESSG++  L  ++P   E I+A+ +L
Sbjct: 563  KQLPDHFDISKIPLDDSKTLALYAKGDTNGVFQFESSGIKNVLRQLKPTTFEHIVAVNAL 622

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP  NI  +  R++G EK+  +   +  +L  T G+I+YQEQVM +A+  +G++L E
Sbjct: 623  YRPGPSRNIQSFIQRRHGHEKVTILDSSLKTILAPTFGIIVYQEQVMLVAETFAGFTLGE 682

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LR AM KK  E+M    E+F+ GA   G     A  IF  + +FA+YGFN+SHA AY
Sbjct: 683  ADLLRSAMSKKKIEKMTAMHEKFVQGAIDLGHDGEQAEQIFAYIDEFANYGFNRSHAVAY 742

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            + +S++ A+MK HYPV F  A +   + + EKI+ +  +A+  NI++ PP++N     + 
Sbjct: 743  SKLSFELAYMKAHYPVAFFTALLNANLGSPEKIRSYIMEAKLRNIEVSPPNINQSQRFWT 802

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              D ++   L  I+GV T     ++ E   +  F S++ F  R+  K   +  L  LV+A
Sbjct: 803  ADDQKLQMGLTNIRGVRTDFVSAVLAERQENGHFKSIQSFIRRLPDKLRKQDTLIQLVYA 862

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GALD FGY+R +L+ +L ++ + A +         + I +  K   SD  TL        
Sbjct: 863  GALDAFGYNRSELITALADLIEAAGF--------GDFILSETKIKKSDDFTLTD------ 908

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQK 1007
              +  +E+  +G   SGHPLD Y  ++     K +E+    I+ +  I+   ++ S ++ 
Sbjct: 909  --KLAHEKEAIGVNLSGHPLDTYSALIIS---KKFEQIADMIKKDQKIKTIVIIDSIRKT 963

Query: 1008 KTRKGSRIGWVTFSE 1022
            +T+KG  + ++T S+
Sbjct: 964  RTKKGEEMAFMTVSD 978


>gi|23308898|ref|NP_601331.2| DNA polymerase III subunit alpha [Corynebacterium glutamicum ATCC
            13032]
 gi|21324900|dbj|BAB99523.1| DNA polymerase III alpha subunit [Corynebacterium glutamicum ATCC
            13032]
          Length = 1194

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 330/1017 (32%), Positives = 537/1017 (52%), Gaps = 63/1017 (6%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            ++ K  SFVHL  H+ +S+L+G   ++ + D++ A   PA+ ITD  N++ +  F +K  
Sbjct: 6    HMAKQSSFVHLHNHTEFSMLDGMAKIDMLADEVKAQGMPAVGITDHGNMYGSNPFYRKMT 65

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTN-QGKTPFPTVPSI---------VLLVSTAEGYQRLI 113
              GI+PIIG +  +  +   K    +   P      +          +L     G + L 
Sbjct: 66   EMGIKPIIGIETYMAPESRFKKERVRWGEPHQKSDDVSGSGAYLHQTMLAENTTGLRNLF 125

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L S      Q  +  R+    + E   EG+I  TG  SG +           A +    
Sbjct: 126  YLSSMASYEGQLGKWPRMDADIIAE-HAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAM 184

Query: 174  FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            ++ ++G D  ++ L  H G D   R R S+++++     LP + TN+  ++ E   +AH+
Sbjct: 185  WQDIYGRDNYFLELMDH-GLDIETRVR-SELLEIGRKLNLPPLVTNDCHYVLESQAQAHE 242

Query: 230  VLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQV 287
             ++ V     +  +DR +     +Y+K+  +M +++ D+ P+  +NT+ IA R     ++
Sbjct: 243  AMLCVQTGKTLHDEDRFKFGGTGYYVKSAEQMRALWDDMVPDGCDNTLWIAERVQSYDEI 302

Query: 288  HAPILPRFIEKECDDIQKEEENE-------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
                   + E   D +   +  E       L ++ +AGLE R +   +      +DY +R
Sbjct: 303  -------WEEHSHDRMPIADVPEGYTPTTWLHHEVMAGLEDRFSGQQVP-----EDYIER 350

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
             ++E++VI    +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+  
Sbjct: 351  AEYEISVIDMKGYPSYFLIVAEIIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEH 410

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNP+R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K AL+D
Sbjct: 411  GLLFERFLNPERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQALKD 470

Query: 461  VGRAL--QMPYSQVDRLCK-LIPNDPAHPVSLQAIADDS--RFREARL------ADPSVD 509
              R    Q  Y   DR+ K L P   A  + L  I D    RF EA         DP V 
Sbjct: 471  SARVQMGQPGYQIADRVIKELPPAIMAKDIPLSGITDPDHPRFNEAGAVRQLIETDPDVK 530

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            R+ + ++ LEG+ R +  HA  +++   PL   +PM++       +T ++    E  GL+
Sbjct: 531  RIYDTARGLEGVVRQSGVHACAVIMSSVPLLDCIPMWKRPADGALITGWDYPACEAIGLL 590

Query: 570  KFDFLGLKTLTLLQKSLDFL-AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            K DFLGL+ LT++  +++ + A R G  +DL  +  +D ETY LL    TLG+FQL+  G
Sbjct: 591  KMDFLGLRNLTVIGDAIENIKANRDGEVLDLENLAIEDEETYKLLGRGETLGVFQLDGGG 650

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP----LIDPM 681
            M++ L+ MQP    DI+A ++LYRPGP  ++    Y +RKNG++ I  IHP     ++ +
Sbjct: 651  MQELLKRMQPTGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEALEEI 710

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L ET G+I+YQEQ+M+I+Q ++ Y+  +AD  R+AMGKK  E ++K+   F  G   NG 
Sbjct: 711  LGETYGLIVYQEQIMRISQKVANYTAGQADGFRKAMGKKKPEVLEKEFANFEGGMKANGY 770

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            S      +++ +  FA Y FNKSHAA Y ++S+ TA++K HY  E++AA +T   DN +K
Sbjct: 771  SDAAIKTLWDTILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDK 830

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
               +  D R   I+++ P +N   ++F      I Y L AI+ VG      I++   +K 
Sbjct: 831  SAIYLSDCRHLGIRVLSPDINESSLNFLPVGTDIRYGLGAIRNVGAEVVDSILDTRKEKG 890

Query: 862  -FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             F    D+  ++D+   N+R+ ESL+  GA D  G++R  L+   ++        +K   
Sbjct: 891  LFKDFSDYLDKIDTLPCNKRITESLIKGGAFDSLGHARKGLMLVFEDAVDSVIATKKAAD 950

Query: 921  NKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFEN----EQRVLGFYFSGHPLDVYK 972
                ++FA      +D + +  + +V +     ++    E+ +LG Y SGHPLD Y+
Sbjct: 951  KGQFDLFAAFDSDNNDDVASFFQITVPDDEWDRKHELALEREMLGLYVSGHPLDGYE 1007


>gi|315168074|gb|EFU12091.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX1341]
          Length = 1109

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 338/1038 (32%), Positives = 542/1038 (52%), Gaps = 68/1038 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +      +G +       ++L     +GYQ+L++L S   +  +G   +
Sbjct: 62   IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
                S L +     L  +T  + G + + FF +  Q        F++L  + D   + ++
Sbjct: 110  AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244
                 ++ R   +       +LP VA      L+ E+  A  VL ++  +    + SQ  
Sbjct: 161  HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219

Query: 245  RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             P +   +YL+       +M+ I     E  +NT+++A  C   + +H  +LP F     
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAG--AEVAQNTIQLAENCRVDIPLHQKLLPHF---PV 273

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D Q    + LR   +  L  R+        +  + Y++RL+ EL +I  M F  YFLIV
Sbjct: 274  PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+
Sbjct: 326  WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +P
Sbjct: 386  DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L 
Sbjct: 446  NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+ +   +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+
Sbjct: 505  NLVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLN 563

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI 
Sbjct: 564  QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            V+  RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ K
Sbjct: 624  VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++
Sbjct: 684  KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I + 
Sbjct: 744  KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +++KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +
Sbjct: 804  FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863

Query: 898  RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R QL   L+ NIQ     +     +  E +   E          E+ +      R E E+
Sbjct: 864  RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015
            + LG Y SGHP + +K    K  +    + V  +  N   +L   V + +  +T+KG ++
Sbjct: 912  QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +         FP
Sbjct: 968  AFVDGDDTTGSISLTLFP 985


>gi|257077930|ref|ZP_05572291.1| DNA polymerase III alpha subunit [Enterococcus faecalis JH1]
 gi|256985960|gb|EEU73262.1| DNA polymerase III alpha subunit [Enterococcus faecalis JH1]
          Length = 1109

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 337/1038 (32%), Positives = 542/1038 (52%), Gaps = 68/1038 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +      +G +       ++L     +GYQ+L++L S   +  +G   +
Sbjct: 62   IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
                S L +     L  +T  + G + + FF +  Q        F++L  + D   + ++
Sbjct: 110  AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244
                 ++ R   +       +LP VA      L+ E+  A  VL ++  +    + SQ  
Sbjct: 161  HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219

Query: 245  RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             P +   +YL+       +M+ I     E ++NT+++A  C   + +H  +LP F     
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D Q    + LR   +  L  R+        +  + Y++RL+ EL +I  M F  YFLIV
Sbjct: 274  PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+
Sbjct: 326  WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +P
Sbjct: 386  DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     +  ++  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L 
Sbjct: 446  NKLKITLE-ESYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+     +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+
Sbjct: 505  NLVPLQLG-SNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLN 563

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI 
Sbjct: 564  QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            V+  RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ K
Sbjct: 624  VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++
Sbjct: 684  KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I + 
Sbjct: 744  KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +++KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +
Sbjct: 804  FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863

Query: 898  RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R QL   L+ NIQ     +     +  E +   E          E+ +      R E E+
Sbjct: 864  RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015
            + LG Y SGHP + +K    K  +    + V  +  N   +L   V + +  +T+KG ++
Sbjct: 912  QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +         FP
Sbjct: 968  AFVDGDDTTGSISLTLFP 985


>gi|169629781|ref|YP_001703430.1| DNA polymerase III subunit alpha [Mycobacterium abscessus ATCC 19977]
 gi|169241748|emb|CAM62776.1| DNA polymerase III alpha subunit [Mycobacterium abscessus]
          Length = 1185

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 337/1015 (33%), Positives = 527/1015 (51%), Gaps = 63/1015 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  +  +L ++      A+ +TD  N++ A EF   A A G++P
Sbjct: 7    SFVHLHNHTEYSMLDGAAKIKPMLAEVERLGMSAVGMTDHGNMYGASEFYNVAAATGVKP 66

Query: 70   IIGCQLDI---------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            IIG +  I                 Q +  ++  G     +   + ++   A G + L +
Sbjct: 67   IIGIEAYIAPASRFDTKRVFWGDPGQKSDDVSGSG-----SYTHMTMVAENATGLRNLFK 121

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E  + G+I  TG  SG +           A      +
Sbjct: 122  LSSLASFEGQLGKWARMDADLIAEHAS-GIIATTGCPSGEVQTRLRLGQESEALAAAAKW 180

Query: 175  KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG D  ++ L  H    +R     ++++     +P +ATN+  +++++    H+ L+
Sbjct: 181  QDIFGKDNFFLELMDHGLSIERRVREGLLEVGKKLGIPPLATNDCHYVTKDHAHNHEALL 240

Query: 233  AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVH-- 288
             V     +S   R +   D +YLK  SEM  ++ D +P A +NT+ IA R      V   
Sbjct: 241  CVQTGKTLSDPTRFKFDGDGYYLKPASEMRDLWDDAVPGACDNTLLIAERVQSYEDVWNF 300

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +P F   E +D    +++ LR +   GLE R        G    +Y  R  +EL+VI
Sbjct: 301  KDRMPIFPVPEGED----QDSWLRKEVDRGLERRFEG---VPGGVPDEYFTRAHYELDVI 353

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +  F  YFL+V D +  AK+  I VGPGRGS AGS+ AYAL IT+IDP+   LLFERFL
Sbjct: 354  KQKGFPAYFLVVGDLVSHAKEVGIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFL 413

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--Q 466
            NP+R S PD DIDF   RR E++RY   K+G +RVAQ+ITFG+++ KAAL+D  R    Q
Sbjct: 414  NPERPSAPDIDIDFDDRRRGEMVRYATEKWGSDRVAQVITFGTIKTKAALKDSARIHYGQ 473

Query: 467  MPYSQVDRLCKLIPND-PAHPVSLQAIA--DDSRFREARL------ADPSVDRLLEISQK 517
              ++  DR+ K +P    A  + +  I   +  R++EA         DP V  + + +  
Sbjct: 474  PGFAIADRITKALPPPIMAKDIPVWGITNPEHERYKEAAEVRTLIDTDPDVRNIYQTALG 533

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R+A  HA  +++   PL+  +P+++  +    +T ++    E  GL+K DFLGL+
Sbjct: 534  LEGLIRNAGVHACAVIMSSEPLTDAIPLWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLR 593

Query: 578  TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT++  +LD + A RG+ +DL  +P DD  TY LL+   TLG+FQL+   MR  L  MQ
Sbjct: 594  NLTVIGDALDNIKANRGIDLDLDHLPLDDPATYELLSRGDTLGVFQLDGGPMRDLLRRMQ 653

Query: 637  PDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK----ETQGVII 690
            P    DI+A+++LYRPGP+       Y +RKNG++ I  IHP ++  LK    ET G+I+
Sbjct: 654  PTGFNDIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKDILAETFGLIV 713

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQ+M IAQ ++ YS+ +AD LR+AMGKK  E ++ + + F  G + NG S+     ++
Sbjct: 714  YQEQIMFIAQKVASYSMGKADALRKAMGKKKLEVLEAEYKGFYEGMTNNGFSEKAVKALW 773

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            + +  FA Y FNKSHAA Y ++S+ TA++K +YP E++A  +T   D+ +K   +  D R
Sbjct: 774  DTILPFAGYAFNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCR 833

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFC 869
            +  I ++PP VN    +F      I Y L  ++ VG    + ++    +K  F    D+ 
Sbjct: 834  RLGITVLPPDVNESVHNFASVGEDIRYGLGGVRNVGANVVQSLIATREEKGAFTDFSDYL 893

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             ++D    N++V ESLV AGA D  G+ R  L     +        +K       ++F  
Sbjct: 894  HKIDIAACNKKVTESLVKAGAFDSLGHPRKGLFLVQSDAVDSVLGTKKAEAMGQFDLFG- 952

Query: 930  EKGTFSDKITLEK-FSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRK 977
              G   D +     F+++     +E       E+ +LG Y SGHPL+    +L +
Sbjct: 953  --GGGEDSVPASDIFAIKVPDDEWEEKHKLALEREMLGLYVSGHPLNGVAHLLSR 1005


>gi|313901726|ref|ZP_07835155.1| DNA polymerase III, alpha subunit [Thermaerobacter subterraneus DSM
            13965]
 gi|313468014|gb|EFR63499.1| DNA polymerase III, alpha subunit [Thermaerobacter subterraneus DSM
            13965]
          Length = 1162

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 341/1086 (31%), Positives = 544/1086 (50%), Gaps = 103/1086 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  HS+YS L+GA  +  ++++ AA   PA+A+TD +N+  A+EF + A AAGI+PI
Sbjct: 2    FVHLHCHSAYSFLDGASPVQALVERAAALGMPALALTDHDNVAGAVEFDRAARAAGIKPI 61

Query: 71   IGCQLDIDMQD-----------------------------------------------NL 83
             G ++ + + +                                                 
Sbjct: 62   QGAEVTLLLDEPAGPAGVRPARPRPAAGAGPGGARPAGGGLGTGGKPGGGGPGGPGDAAP 121

Query: 84   KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW---LQEI- 139
            +   +G+ P P    +VLL +  +GY RL  L++R +L D+ + S    L W   L+E+ 
Sbjct: 122  RPAAEGR-PEPVTAHLVLLATGPQGYARLCRLLTRAHL-DRPRGSP--ALPWTVLLEEVA 177

Query: 140  -GTE-----GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGY 192
             G E     GLI L+G   GP+ +A        A +R    +  FG +  ++ LQ   G+
Sbjct: 178  PGGEPLAGHGLIALSGCRQGPVLQALLRGDRATALERARQLRDAFGRENFFLELQG--GW 235

Query: 193  ---DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
               +R     +  LA    + LVATN+  + + + +  HD+L  V     V +    R +
Sbjct: 236  LPGNRALNRALADLAEHLGVGLVATNDVHYATRDRFAVHDLLACVRLGIPVDEPHPQRHL 295

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              D+ LK+   M  +F+  P+ALE T+ IA RC       AP LP     E    +    
Sbjct: 296  NADNDLKSPRAMARMFAGYPQALEATLAIAERC-------APALP-----EGGVPRPAFP 343

Query: 309  NELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
                 +A A L  ++ +GA+ + G      RQRL+ EL++I +++ + YFL+V D  ++A
Sbjct: 344  LPPGVRAEAYLREQVERGALWRYGRITPRIRQRLEHELSIIEKLQLADYFLLVWDVARYA 403

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I    GRGS A S  AY L ITD+D +   LLFERFL+ +R   PD DIDF    R
Sbjct: 404  RQQGIRCA-GRGSAADSAVAYCLGITDVDAIERGLLFERFLSLERAEQPDIDIDFDARYR 462

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D+V  YV+ +YG E VA + T+ +  A+ ALRD G+ L  P + +DR+ K +P   +  +
Sbjct: 463  DQVADYVEQRYGPEHVATVCTYQTYHARGALRDFGKVLGFPEAVIDRIAKRVPYYLSRQL 522

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+A+    R+  L    + RL+ + +   GL RH  TH  G+VI  RPLS L P+ R
Sbjct: 523  G-RALAEVPELRDLDLPRERLKRLVALCEAAAGLPRHMGTHLGGLVISRRPLSDLSPLQR 581

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
              +    + QF+ + +E+ GL+K D L L+TL  +++++  + +R    D   IP DD  
Sbjct: 582  SAKGRR-ILQFDKRGVEELGLVKLDLLSLRTLGAVEEAVRVIRRRNPSFDYDHIPLDDRA 640

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRK 665
            TY LL T  T+G FQLES   R     ++P+ +ED++A V++ RPGPI  D +  +  R+
Sbjct: 641  TYRLLGTGETVGAFQLESPAQRALQPRLRPENLEDVVASVAIIRPGPIKGDMVEPFLARR 700

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEE 724
             G+E +  +HP ++P+L++T GV+++QEQV++IA  ++G++  EAD LRR M   +  EE
Sbjct: 701  RGQEPVTYLHPKLEPILRKTWGVVLFQEQVIEIATAIAGFTPGEADRLRRVMTHARSPEE 760

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M+     F+  A + G+ + +A  IF ++  +A YGF ++HAAA+ V +Y+TA++  HYP
Sbjct: 761  MEDIGRHFLRRARQQGVGEEVAQAIFRMIQGYASYGFCEAHAAAFGVTAYKTAYLLAHYP 820

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             E+ AA ++L+            +A +  IQI+P  +NT  V F      I   L A+KG
Sbjct: 821  AEWYAALLSLQPMGYYPPNTLGVEAARRGIQILPLDINTSQVAFTATPGTIRIGLRAVKG 880

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKK-------LNRRVLESLVFAGALDCFGY 896
            +G   A  I+ E     PF  L DF  R+ ++        L+R  + +L+ AGA D    
Sbjct: 881  LGDEPAAAIVAERERGGPFRHLMDFLLRLAARGGTAAGPVLDREQVAALIRAGAFDGLHA 940

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LL  LD     A+              A      +D   LEK+++E   +  +  +
Sbjct: 941  NRRALLWGLDEALATARQAAGGGDLAQGLAAAWSPPVVADFPDLEKWAMEREVLGIDVHR 1000

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            R        H L + + +L   G +          G  +R A + V   +  TR G  I 
Sbjct: 1001 R--------HLLAMLREVLEARGYRPAAALRGLPPGVPVRAAGIPVRPHRPPTRSGRVIV 1052

Query: 1017 WVTFSE 1022
            ++T  +
Sbjct: 1053 FLTLED 1058


>gi|307286902|ref|ZP_07566982.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0109]
 gi|312900994|ref|ZP_07760287.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0470]
 gi|306502027|gb|EFM71314.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0109]
 gi|311291895|gb|EFQ70451.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0470]
          Length = 1109

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 337/1038 (32%), Positives = 541/1038 (52%), Gaps = 68/1038 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L   +EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGVVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +      +G +       ++L     +GYQ+L++L S   +  +G   +
Sbjct: 62   IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
                S L +     L  +T  + G + + FF +  Q        F++L  + D   + ++
Sbjct: 110  AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244
                 ++ R   +       +LP VA      L+ E+  A  VL ++  +    + SQ  
Sbjct: 161  HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219

Query: 245  RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             P +   +YL+       +M+ I     E ++NT+++A  C   + +H  +LP F     
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D Q    + LR   +  L  R+        +  + Y++RL+ EL +I  M F  YFLIV
Sbjct: 274  PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+
Sbjct: 326  WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +P
Sbjct: 386  DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L 
Sbjct: 446  NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+     +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+
Sbjct: 505  NLVPLQLG-SNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLN 563

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI 
Sbjct: 564  QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            V+  RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ K
Sbjct: 624  VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++
Sbjct: 684  KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I + 
Sbjct: 744  KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +++KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +
Sbjct: 804  FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863

Query: 898  RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R QL   L+ NIQ     +     +  E +   E          E+ +      R E E+
Sbjct: 864  RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015
            + LG Y SGHP + +K    K  +    + V  +  N   +L   V + +  +T+KG ++
Sbjct: 912  QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +         FP
Sbjct: 968  AFVDGDDTTGSISLTLFP 985


>gi|237785363|ref|YP_002906068.1| DNA polymerase III subunit alpha [Corynebacterium kroppenstedtii DSM
            44385]
 gi|237758275|gb|ACR17525.1| DNA polymerase III, alpha subunit [Corynebacterium kroppenstedtii DSM
            44385]
          Length = 1199

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 331/1023 (32%), Positives = 535/1023 (52%), Gaps = 77/1023 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+G   ++ ++D++     PA+ +TD  N+F +  F +   A  I+P
Sbjct: 12   SFVHLHNHTEYSMLDGMAKVDLLVDEVKRQNMPAVGMTDHGNMFGSDAFYRAMTANDIKP 71

Query: 70   IIG--CQLDIDMQDNLKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG  C +  D + N K    G+        +         ++   A G + L  L S  
Sbjct: 72   IIGVECYMAPDSRFNKKRVRWGEAHQKRDDVSASGAYLHQTMIAENATGLKNLFYLSSMA 131

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
                Q  +  R+    + E  +EG+I  T   SG +           A K    ++ ++G
Sbjct: 132  SYEGQLGKWPRMDAELIAE-HSEGIIATTACPSGEVQTRLRLGQFDEALKAAAKWQDIYG 190

Query: 180  -DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H      R  ++++++     +P + TN+  +++++   +H+V++ V   
Sbjct: 191  KDNYFLELMDHGIEIEQRVRNELLEIGRKLNIPPLVTNDCHYVTKDQARSHEVMLCVQTG 250

Query: 238  TVVSQK------DRPRVTPD-HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHA 289
            + +++       +R     D +YLK+  EM   + D+ P   +NT+ IA R     ++  
Sbjct: 251  STMNEPTLDQGGNRFAFNGDGYYLKSAREMRDTWDDMVPGGCDNTLLIAERVGDYSEIWE 310

Query: 290  PI----LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            P     +P++   E         + L ++   GL+ R     +      Q+Y  R  +E+
Sbjct: 311  PHTHDRMPKYDVPEG----YTPTSWLTHEVEQGLKKRFEGQPVP-----QEYTDRAKYEI 361

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VI    +  YFL+VAD I+ A++  I VGPGRGS AGS+ AYALTIT+IDPL+  LLFE
Sbjct: 362  GVIDFKGYPSYFLVVADLIKHARRVGIRVGPGRGSAAGSLVAYALTITNIDPLQHGLLFE 421

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R S PD DIDF   RR E+IRY  + +G ++VAQ+ITFG+++ K AL+D  RA 
Sbjct: 422  RFLNPERPSAPDIDIDFDDRRRGEMIRYAADNWGEDKVAQVITFGTVKTKQALKDSARAH 481

Query: 466  --QMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDR 510
              Q  +   +R+ K +P              DP HP   +A    +  R+    DP V +
Sbjct: 482  FGQPGFQMAERITKALPAPIMAKDIPLSGIVDPEHPRYSEA----AEVRQLIETDPDVKK 537

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            + + ++ LEG+ R A  HA  +++   PL   +PM++  +    +T +     E  GL+K
Sbjct: 538  IFDTARGLEGVVRQAGVHACAVIMASVPLLDHIPMWKRAQDGAIITGWPYPACEAIGLLK 597

Query: 571  FDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             DFLGL+ LT++   ++ + + RG  +DL  +   D  TY LL+   TLG+FQL+S GMR
Sbjct: 598  MDFLGLRNLTVIGDCIENIKENRGEDLDLEGLSVVDEPTYELLSRGDTLGVFQLDSGGMR 657

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHP-LIDPM---LK 683
            + L+ M P    DI+A ++LYRPGP+       Y +RKNG+EKI  IHP L +P+   L 
Sbjct: 658  ELLKRMGPTEFSDIVAALALYRPGPMGEGAHWSYADRKNGREKITPIHPELEEPLRDILA 717

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+I+YQEQ+M+I+Q ++ YS  +AD  R+AMGKK  E + K++  F +G  +NG S 
Sbjct: 718  ETYGLIVYQEQIMKISQKVANYSAGQADSFRKAMGKKKPEVLAKERVSFEAGMKENGYSD 777

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                 +++++  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K  
Sbjct: 778  DAINTLWKVILPFAGYAFNKSHAAGYGLVSFWTAYLKANYTAEYMAALLTSVSDKKDKSA 837

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PF 862
             +  D R   I ++ P VN+    F+     I + L A++ VG      I+    +K  F
Sbjct: 838  IYLSDCRHLGIDVLSPDVNSSKYTFQSVGKDIRFGLGAVRNVGEDVVESIVSTRREKGAF 897

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKN 918
                D+ +++D+   NRRV ESL+ AGA D  G+ R  L      ++D++    +  +K 
Sbjct: 898  KDFTDYLNKIDTIACNRRVTESLIKAGAFDSMGHPRKGLYLIHEDAVDSVISTKKAADKG 957

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYK 972
            +     ++FA   G   ++ +   FS+E     ++       E+ +LG Y S HPLD Y+
Sbjct: 958  QF----DLFAGLGGEAEEEDS--AFSIEVPDQEWDRKHKLALEREMLGLYVSEHPLDGYE 1011

Query: 973  PIL 975
              L
Sbjct: 1012 ETL 1014


>gi|315165092|gb|EFU09109.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX1302]
          Length = 1109

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 337/1038 (32%), Positives = 541/1038 (52%), Gaps = 68/1038 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L   +EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGVVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +      +G +       ++L     +GYQ+L++L S   +  +G   +
Sbjct: 62   IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
                S L +     L  +T  + G + + FF +  Q        F++L  + D   + ++
Sbjct: 110  AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244
                 ++ R   +       +LP VA      L+ E+  A  VL ++  +    + SQ  
Sbjct: 161  HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219

Query: 245  RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             P +   +YL+       +M+ I     E ++NT+++A  C   + +H  +LP F     
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D Q    + LR   +  L  R+        +  + Y++RL+ EL +I  M F  YFLIV
Sbjct: 274  PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+
Sbjct: 326  WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +P
Sbjct: 386  DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L 
Sbjct: 446  NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+     +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+
Sbjct: 505  NLVPLQLG-SNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLN 563

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI 
Sbjct: 564  QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            V+  RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ K
Sbjct: 624  VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++
Sbjct: 684  KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I + 
Sbjct: 744  KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +++KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +
Sbjct: 804  FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863

Query: 898  RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R QL   L+ NIQ     +     +  E +   E          E+ +      R E E+
Sbjct: 864  RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015
            + LG Y SGHP + +K    K  +    + V  +  N   +L   V + +  +T+KG ++
Sbjct: 912  QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +         FP
Sbjct: 968  AFVDGDDTTGSISLTLFP 985


>gi|62390966|ref|YP_226368.1| DNA polymerase III subunit alpha [Corynebacterium glutamicum ATCC
            13032]
 gi|41326305|emb|CAF20467.1| PUTATIVE DNA POLYMERASE III, ALPHA CHAIN [Corynebacterium glutamicum
            ATCC 13032]
          Length = 1188

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 330/1016 (32%), Positives = 536/1016 (52%), Gaps = 63/1016 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  SFVHL  H+ +S+L+G   ++ + D++ A   PA+ ITD  N++ +  F +K   
Sbjct: 1    MAKQSSFVHLHNHTEFSMLDGMAKIDMLADEVKAQGMPAVGITDHGNMYGSNPFYRKMTE 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN-QGKTPFPTVPSI---------VLLVSTAEGYQRLIE 114
             GI+PIIG +  +  +   K    +   P      +          +L     G + L  
Sbjct: 61   MGIKPIIGIETYMAPESRFKKERVRWGEPHQKSDDVSGSGAYLHQTMLAENTTGLRNLFY 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +           A +    +
Sbjct: 121  LSSMASYEGQLGKWPRMDADIIAE-HAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAMW 179

Query: 175  KKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            + ++G D  ++ L  H G D   R R S+++++     LP + TN+  ++ E   +AH+ 
Sbjct: 180  QDIYGRDNYFLELMDH-GLDIETRVR-SELLEIGRKLNLPPLVTNDCHYVLESQAQAHEA 237

Query: 231  LMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVH 288
            ++ V     +  +DR +     +Y+K+  +M +++ D+ P+  +NT+ IA R     ++ 
Sbjct: 238  MLCVQTGKTLHDEDRFKFGGTGYYVKSAEQMRALWDDMVPDGCDNTLWIAERVQSYDEI- 296

Query: 289  APILPRFIEKECDDIQKEEENE-------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
                  + E   D +   +  E       L ++ +AGLE R +   +      +DY +R 
Sbjct: 297  ------WEEHSHDRMPIADVPEGYTPTTWLHHEVMAGLEDRFSGQQVP-----EDYIERA 345

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            ++E++VI    +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   
Sbjct: 346  EYEISVIDMKGYPSYFLIVAEIIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHG 405

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K AL+D 
Sbjct: 406  LLFERFLNPERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQALKDS 465

Query: 462  GRAL--QMPYSQVDRLCK-LIPNDPAHPVSLQAIADDS--RFREARL------ADPSVDR 510
             R    Q  Y   DR+ K L P   A  + L  I D    RF EA         DP V R
Sbjct: 466  ARVQMGQPGYQIADRVIKELPPAIMAKDIPLSGITDPDHPRFNEAGAVRQLIETDPDVKR 525

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            + + ++ LEG+ R +  HA  +++   PL   +PM++       +T ++    E  GL+K
Sbjct: 526  IYDTARGLEGVVRQSGVHACAVIMSSVPLLDCIPMWKRPADGALITGWDYPACEAIGLLK 585

Query: 571  FDFLGLKTLTLLQKSLDFL-AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
             DFLGL+ LT++  +++ + A R G  +DL  +  +D ETY LL    TLG+FQL+  GM
Sbjct: 586  MDFLGLRNLTVIGDAIENIKANRDGEVLDLENLAIEDEETYKLLGRGETLGVFQLDGGGM 645

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP----LIDPML 682
            ++ L+ MQP    DI+A ++LYRPGP  ++    Y +RKNG++ I  IHP     ++ +L
Sbjct: 646  QELLKRMQPTGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEALEEIL 705

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
             ET G+I+YQEQ+M+I+Q ++ Y+  +AD  R+AMGKK  E ++K+   F  G   NG S
Sbjct: 706  GETYGLIVYQEQIMRISQKVANYTAGQADGFRKAMGKKKPEVLEKEFANFEGGMKANGYS 765

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                  +++ +  FA Y FNKSHAA Y ++S+ TA++K HY  E++AA +T   DN +K 
Sbjct: 766  DAAIKTLWDTILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKS 825

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP- 861
              +  D R   I+++ P +N   ++F      I Y L AI+ VG      I++   +K  
Sbjct: 826  AIYLSDCRHLGIRVLSPDINESSLNFLPVGTDIRYGLGAIRNVGAEVVDSILDTRKEKGL 885

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F    D+  ++D+   N+R+ ESL+  GA D  G++R  L+   ++        +K    
Sbjct: 886  FKDFSDYLDKIDTLPCNKRITESLIKGGAFDSLGHARKGLMLVFEDAVDSVIATKKAADK 945

Query: 922  KHENIFAHEKGTFSDKI-TLEKFSVENSSVRFEN----EQRVLGFYFSGHPLDVYK 972
               ++FA      +D + +  + +V +     ++    E+ +LG Y SGHPLD Y+
Sbjct: 946  GQFDLFAAFDSDNNDDVASFFQITVPDDEWDRKHELALEREMLGLYVSGHPLDGYE 1001


>gi|300780861|ref|ZP_07090715.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium
           genitalium ATCC 33030]
 gi|300532568|gb|EFK53629.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium
           genitalium ATCC 33030]
          Length = 1185

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 332/1015 (32%), Positives = 526/1015 (51%), Gaps = 64/1015 (6%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + K  SFVHL  H+ +S+L+G   ++ + ++++    PA+ +TD  N+F +  F ++   
Sbjct: 1   MAKKSSFVHLHNHTEFSMLDGMAKVDLLAEEVSRQGMPAVGMTDHGNMFGSNAFYRRMTD 60

Query: 65  AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113
           AGI+PIIG +  +  + + N K    G TP      +          +L   A G + L 
Sbjct: 61  AGIKPIIGIEAYMAPESRFNKKRVLWG-TPDQKGDDVSASGAYLHQTMLAENATGLRNLF 119

Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            L S      Q  +  R+    + E   +G+I  TG  SG +           A +    
Sbjct: 120 RLSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQYDQALEAAAM 178

Query: 174 FKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
           ++ ++G D  ++ L  H    +R     ++++    +LP + TN+  ++ E    AH+ +
Sbjct: 179 WQDIYGKDNYFLELMDHGLTIERRVREDLLRIGEALDLPPLVTNDCHYVLESQAPAHEAM 238

Query: 232 MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHA 289
           + V     +   DR +     +Y+K+  +M + + D+ P+  +NT+ +A R     ++ A
Sbjct: 239 LCVQTGKTLLDPDRFKFDGTGYYIKSAEQMRNDWDDMVPDGCDNTLWVAERVGDYGELWA 298

Query: 290 PILPRFIEKECD--DIQKEEENE-----LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                  E   D   I    E E     LR +   GL+ R     +      +DYR R D
Sbjct: 299 -------EHPHDRMPIATVPEGETPTTWLRKEVHRGLDERFEGKEVP-----EDYRTRAD 346

Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
           +E++VI    +  YFLIVA+ I+ A+   I VGPGRGS AGS+ AYALTIT+IDP+   L
Sbjct: 347 YEIDVIDMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGSLVAYALTITNIDPMEHGL 406

Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
           LFERFLNP+R S PD DIDF   RR E++ Y    +G +++AQ+ITFG+++ K A++D  
Sbjct: 407 LFERFLNPERPSAPDIDIDFDDRRRGEMLTYAAENWGEDKIAQVITFGTVKTKQAIKDSA 466

Query: 463 RA--LQMPYSQVDRL-CKLIPNDPAHPVSLQAIAD--DSRFREAR------LADPSVDRL 511
           +    Q  + + DR+   L P   A  + L  I D    R+ EA         DP V ++
Sbjct: 467 KVNFGQEGFQKADRINAALPPAIMAKDIPLSGITDPEHDRYSEATEVRSMIETDPDVAKI 526

Query: 512 LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            E ++ LEG+ R A  HA  +++   PL   +PM++       +T ++    E  GL+K 
Sbjct: 527 YETARGLEGVVRQAGVHACAVIMASVPLMDHIPMWKRPADGALITGWDYPACEAIGLLKM 586

Query: 572 DFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
           DFLGL+ LT++  +++ + + RG  +DL  +  D+   Y LL+   TLG+FQL+  GM++
Sbjct: 587 DFLGLRNLTVIGDAIENIEKNRGETIDLEALDTDNEAVYELLSRGDTLGVFQLDGGGMQE 646

Query: 631 ALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----E 684
            L+ M+P    DI+A ++LYRPGP  ++    Y +RKNG++ I  IHP ++  LK    E
Sbjct: 647 LLKRMKPTGFNDIVASLALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEPLKEILDE 706

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
           T G+I+YQEQ+M I+Q ++ Y+  +AD  R+AMGKK  E + ++ E+F  G   NG SK 
Sbjct: 707 TYGLIVYQEQIMNISQKVANYTAGQADGFRKAMGKKKPEVLAQEYEKFSQGMFDNGYSKA 766

Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
               ++  +  FA Y FNKSHAA YA++SY TA++K +Y  E++AA +T   D  +K   
Sbjct: 767 AVDALWGTIEPFASYAFNKSHAAGYALVSYWTAYLKANYAAEYMAALLTSVGDKKDKSAI 826

Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFD 863
           +  D R   I ++PP +N     F   D  I Y LAAI+ VG      IME+   K  F 
Sbjct: 827 YLADCRHLGISVLPPDINESEETFMAVDKDIRYGLAAIRNVGAEVVESIMESRRTKGAFT 886

Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
           +  D+  ++D    N+R+ ESL+ AGA D   + R  LL   D+        +K      
Sbjct: 887 NFSDYLDKIDLLPCNKRITESLIKAGAFDSLDHPRKGLLLVSDDAVDSVLTTKKAADKGQ 946

Query: 924 ENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYK 972
            ++F+   G   D+     FS+E     +E       E+ +LG Y SGHPLD ++
Sbjct: 947 FDLFSAFGG---DQEATNAFSIEVPDDEWEKKHKLALEREMLGLYVSGHPLDGFE 998


>gi|257083953|ref|ZP_05578314.1| DNA polymerase III alpha subunit [Enterococcus faecalis Fly1]
 gi|256991983|gb|EEU79285.1| DNA polymerase III alpha subunit [Enterococcus faecalis Fly1]
          Length = 1109

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 335/1038 (32%), Positives = 542/1038 (52%), Gaps = 68/1038 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +      +G +       ++L     +GYQ+L++L S   +  +G   +
Sbjct: 62   IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
                S L +     L  +T  + G + + FF +  Q        F++L  + D   + ++
Sbjct: 110  AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244
                 ++ R   +       +LP VA      L+ E+  A  VL ++  +    + SQ  
Sbjct: 161  HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219

Query: 245  RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             P +   +YL+       +M+ I     E ++NT+++A  C   + +H  +LP F     
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF----P 272

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +   + LR   +  L  R+        +  + Y++RL+ EL +I  M F  YFLIV
Sbjct: 273  VPANQTAGSYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+
Sbjct: 326  WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +P
Sbjct: 386  DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L 
Sbjct: 446  NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+ +   +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+
Sbjct: 505  NLVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLN 563

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP +D  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI 
Sbjct: 564  QIPLNDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            V+  RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ K
Sbjct: 624  VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++
Sbjct: 684  KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I + 
Sbjct: 744  KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +++KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +
Sbjct: 804  FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863

Query: 898  RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R QL   L+ NIQ     +     +  E +   E          E+ +      R E E+
Sbjct: 864  RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015
            + LG Y SGHP + +K    K  +    + V  +  N   +L   V + +  +T+KG ++
Sbjct: 912  QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +         FP
Sbjct: 968  AFVDGDDTTGSISLTLFP 985


>gi|172040866|ref|YP_001800580.1| DNA polymerase III subunit alpha [Corynebacterium urealyticum DSM
            7109]
 gi|171852170|emb|CAQ05146.1| DNA polymerase III, alpha subunit [Corynebacterium urealyticum DSM
            7109]
          Length = 1188

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 331/1029 (32%), Positives = 535/1029 (51%), Gaps = 91/1029 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+G   ++ + ++++    PA+ +TD  N+F A  F +   AAGI+P
Sbjct: 5    SFVHLHNHTEYSMLDGMAKVDMLAEEVSRQGMPAVGMTDHGNMFGADAFYRTMTAAGIKP 64

Query: 70   IIGCQ--LDIDMQDNLKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  +  D + N+     G         +         +L   A G + L  L S  
Sbjct: 65   IIGIEAYMAPDSRFNMNRVRWGNPEQKKDDVSASGAYLHQTMLAENATGLRNLFYLSSMA 124

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
                Q  +  R+    + E   EG+I  TG  SG +           A +    ++ ++G
Sbjct: 125  SYEGQLGKWPRMDAELIAE-HAEGVIATTGCPSGDVQTRLRLGQFNEALEAAAMWQDIYG 183

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    ++    +++++    +LP + TN+  ++ E    AH+V++ V   
Sbjct: 184  KDNFFLELMDHGLEIEKRVRDELMEIGRKLDLPPLVTNDCHYVLENQAAAHEVMLCVQTG 243

Query: 238  TVVSQKDRPRV----------TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQ 286
            + +   D P +             +Y++   ++ + +  + P+  +NT+ IA R    +Q
Sbjct: 244  STM---DEPTIDEGGKRFAFSGSSYYIRTAEDIRNQWDHVVPDGCDNTLWIAER----VQ 296

Query: 287  VHAPILPRFIEKECDDIQKEEENE-------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
             +  I   + E   D +   E  E       L ++   GLE R   G +      Q+Y  
Sbjct: 297  DYGEI---WEEHPYDRMPVAEVPEGHTPTSWLTHEVNRGLEERFNGGPVP-----QEYLD 348

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            R ++E++VI    +  YFLIVA+ I++A+   I VGPGRGS AG++ AYALTIT+IDP+ 
Sbjct: 349  RAEYEISVIDMKGYPSYFLIVAELIKYARSVGIRVGPGRGSAAGALVAYALTITNIDPIE 408

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              LLFERFLNP+R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K A++
Sbjct: 409  HGLLFERFLNPERPSAPDIDIDFDDRRRGEMIRYASDRWGEDKIAQVITFGTVKTKQAIK 468

Query: 460  DVGRAL--QMPYSQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLA 504
            D  RA   Q  +   DR+ K +P              DP HP   +A    +  R+    
Sbjct: 469  DSARAWYGQAGFQMADRITKALPPAIMAKDIELKGIKDPEHPRYAEA----AEVRQLIDT 524

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            DP V+++ E +  LEG+ R A  HA  +++   PL   +PM++  +    +T +     E
Sbjct: 525  DPQVNKIYEDALGLEGVVRQAGVHACAVIMSSVPLLDCIPMWKRKQDGALITGWPYPACE 584

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GL+K DFLGL+ LT++  ++D + + RG   DL  +  +D  TY LL    TLG+FQL
Sbjct: 585  AIGLLKMDFLGLRNLTVIGDAIDNIKKNRGEDFDLEGLATEDAATYELLARGDTLGVFQL 644

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDP 680
            +S GM++ L+ MQP    DI+A ++LYRPGP  +     Y +RKNG++ I  IHP L +P
Sbjct: 645  DSGGMQELLKRMQPTGFNDIVAALALYRPGPMGVKAHWEYADRKNGRKPITPIHPELEEP 704

Query: 681  M---LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            +   L+ET G+I+YQEQ+M+I+Q ++ Y+  +AD  R+AMGKK +E +D++ E F  G  
Sbjct: 705  LKEILEETYGLIVYQEQIMRISQKVANYTAGQADGFRKAMGKKKREVLDQEYETFSGGMI 764

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             NG SK     ++  +  FADY FNKSHAA Y ++S+ TA++K +Y  E++AA +T   +
Sbjct: 765  DNGYSKDAIDTLWNTILPFADYAFNKSHAAGYGLVSFWTAYLKANYTAEYMAALLTSVSN 824

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
              +K   +  D R   I+++ P VN     F+     I + L A++ VG      I+ + 
Sbjct: 825  QKDKSAIYLSDCRHLGIKVLSPDVNESAFTFQSVGEDIRFGLGAVRNVGEDVVESIIASR 884

Query: 858  ADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYA 912
             +K  F    D+  ++D+   ++RV ESL+ AGA D  G+ R  L+     ++D +    
Sbjct: 885  EEKGDFKDFSDYLDKIDAVAASKRVTESLIKAGAFDSLGHPRKGLVLVHEDAVDAVVATK 944

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGH 966
            +   K + +    + A E G        + F VE     +E       E+ +LG Y SGH
Sbjct: 945  KAAAKGQFDLFAGLGAEEAG--------DVFKVEVPDQEWERKHELALERDMLGLYVSGH 996

Query: 967  PLDVYKPIL 975
            PLD ++  L
Sbjct: 997  PLDGFEDAL 1005


>gi|329577043|gb|EGG58517.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1467]
          Length = 1109

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 337/1038 (32%), Positives = 541/1038 (52%), Gaps = 68/1038 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +      +G +       ++L     +GYQ+L++L S   +  +G   +
Sbjct: 62   IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
                S L +     L  +T  + G + + FF +  Q        F++L  + D   + ++
Sbjct: 110  AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244
                 ++ R   +       +LP VA      L+ E+  A  VL ++  +    + SQ  
Sbjct: 161  HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219

Query: 245  RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             P +   +YL+       +M+ I     E ++NT+++A  C   + +H  +LP F     
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D Q    + LR   +  L  R+        +  + Y++RL+ EL +I  M F  YFLIV
Sbjct: 274  PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+
Sbjct: 326  WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +P
Sbjct: 386  DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L 
Sbjct: 446  NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+     +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+
Sbjct: 505  NLVPLQLG-SNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLN 563

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI 
Sbjct: 564  QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            V+  RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +A +LRRA+ K
Sbjct: 624  VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQAAILRRAISK 683

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++
Sbjct: 684  KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I + 
Sbjct: 744  KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +++KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +
Sbjct: 804  FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863

Query: 898  RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R QL   L+ NIQ     +     +  E +   E          E+ +      R E E+
Sbjct: 864  RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015
            + LG Y SGHP + +K    K  +    + V  +  N   +L   V + +  +T+KG ++
Sbjct: 912  QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +         FP
Sbjct: 968  AFVDGDDTTGSISLTLFP 985


>gi|295114593|emb|CBL33230.1| DNA polymerase III catalytic subunit, DnaE type [Enterococcus sp.
           7L76]
          Length = 930

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 312/913 (34%), Positives = 496/913 (54%), Gaps = 51/913 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2   SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIG +L+    +      +G +       ++L     +GYQ+L++L S   +  +G   +
Sbjct: 62  IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
               S L +     L  +T  + G + + FF +  Q        F++L  + D   + ++
Sbjct: 110 AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244
                ++ R   +       +LP VA      L+ E+  A  VL ++  +    + SQ  
Sbjct: 161 HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219

Query: 245 RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            P +   +YL+       +M+ I     E ++NT+++A  C   + +H  +LP F     
Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D Q    + LR   +  L  R+        +  + Y++RL+ EL +I  M F  YFLIV
Sbjct: 274 PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            D + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+
Sbjct: 326 WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           D   +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +P
Sbjct: 386 DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
           N     +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L 
Sbjct: 446 NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             VP+ +   +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+
Sbjct: 505 NSVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAIKRVYNQTIHLN 563

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI 
Sbjct: 564 QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
           V+  RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ K
Sbjct: 624 VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K K+ +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++
Sbjct: 684 KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
           K HYP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I + 
Sbjct: 744 KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803

Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            +++KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +
Sbjct: 804 FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863

Query: 898 RMQLLQSLD-NIQ 909
           R QL   L+ NIQ
Sbjct: 864 RRQLAVGLESNIQ 876


>gi|145296091|ref|YP_001138912.1| DNA polymerase III subunit alpha [Corynebacterium glutamicum R]
 gi|140846011|dbj|BAF55010.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1194

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 329/1017 (32%), Positives = 537/1017 (52%), Gaps = 63/1017 (6%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            ++ K  SFVHL  H+ +S+L+G   ++ + D++ A   PA+ ITD  N++ +  F +K  
Sbjct: 6    HMAKQSSFVHLHNHTEFSMLDGMAKIDMLADEVKAQGMPAVGITDHGNMYGSNPFYRKMT 65

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTN-QGKTPFPTVPSI---------VLLVSTAEGYQRLI 113
              GI+PIIG +  +  +   K    +   P      +          +L     G + L 
Sbjct: 66   EMGIKPIIGIETYMAPESRFKKERVRWGEPHQKSDDVSGSGAYLHQTMLAENTTGLRNLF 125

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L S      Q  +  R+    + E   EG+I  TG  SG +           A +    
Sbjct: 126  YLSSMASYEGQLGKWPRMDADIIAER-AEGIIATTGCPSGDVQTRLRLGQFDEALEAAAM 184

Query: 174  FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            ++ ++G D  ++ L  H G D   R R S+++++     LP + TN+  ++ E   +AH+
Sbjct: 185  WQDIYGRDNYFLELMDH-GLDIETRVR-SELLEIGRKLNLPPLVTNDCHYVLESQAQAHE 242

Query: 230  VLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQV 287
             ++ V     +  +DR +     +Y+K+  +M +++ D+ P+  +NT+ IA R     ++
Sbjct: 243  AMLCVQTGKTLHDEDRFKFGGTGYYVKSAEQMRALWDDMVPDGCDNTLWIAERVQSYDEI 302

Query: 288  HAPILPRFIEKECDDIQKEEENE-------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
                   + E   D +   +  E       L ++ +AGL+ R +   +      +DY +R
Sbjct: 303  -------WEEHSHDRMPIADVPEGHTPTSWLHHEVMAGLKDRFSGQQVP-----EDYIER 350

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
             ++E++VI    +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+  
Sbjct: 351  AEYEISVIDMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEH 410

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNP+R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K AL+D
Sbjct: 411  GLLFERFLNPERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQALKD 470

Query: 461  VGRAL--QMPYSQVDRLCK-LIPNDPAHPVSLQAIADDS--RFREARL------ADPSVD 509
              R    Q  Y   DR+ K L P   A  + L  I D    RF EA         DP V 
Sbjct: 471  SARVQMGQPGYQIADRVIKELPPAIMAKDIPLSGITDPDHPRFNEAGAVRQLIETDPDVK 530

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            R+ + ++ LEG+ R +  HA  +++   PL   +PM++       +T ++    E  GL+
Sbjct: 531  RIYDTARGLEGVVRQSGVHACAVIMSSVPLLDCIPMWKRPADGALITGWDYPACEAIGLL 590

Query: 570  KFDFLGLKTLTLLQKSLDFL-AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            K DFLGL+ LT++  +++ + A R G  +DL  +  +D ETY LL    TLG+FQL+  G
Sbjct: 591  KMDFLGLRNLTVIGDAIENIKANRDGEVLDLENLAIEDEETYKLLGRGETLGVFQLDGGG 650

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP----LIDPM 681
            M++ L+ MQP    DI+A ++LYRPGP  ++    Y +RKNG++ I  IHP     ++ +
Sbjct: 651  MQELLKRMQPTGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEALEEI 710

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L ET G+I+YQEQ+M+I+Q ++ Y+  +AD  R+AMGKK  E ++K+   F  G   NG 
Sbjct: 711  LGETYGLIVYQEQIMRISQKVANYTAGQADGFRKAMGKKKPEVLEKEFANFEGGMKANGY 770

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            S      +++ +  FA Y FNKSHAA Y ++S+ TA++K HY  E++AA +T   DN +K
Sbjct: 771  SDAAIKTLWDTILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDK 830

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
               +  D R   I+++ P +N   ++F      I Y L AI+ VG      I++   +K 
Sbjct: 831  SAIYLSDCRHLGIRVLSPDINESSLNFLPVGTDIRYGLGAIRNVGAEVVDSILDTRKEKG 890

Query: 862  -FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             F    D+  ++D+   N+R+ ESL+  GA D  G++R  L+   ++        +K   
Sbjct: 891  LFKDFSDYLDKIDTLPCNKRITESLIKGGAFDSLGHARKGLMLVFEDAVDSVIATKKAAD 950

Query: 921  NKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFEN----EQRVLGFYFSGHPLDVYK 972
                ++FA      +D + +  + +V +     ++    E+ +LG Y SGHPLD Y+
Sbjct: 951  KGQFDLFAAFDSDNNDDVASFFQITVPDDEWDRKHELALEREMLGLYVSGHPLDGYE 1007


>gi|229546892|ref|ZP_04435617.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1322]
 gi|256852698|ref|ZP_05558069.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|229308057|gb|EEN74044.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1322]
 gi|256712043|gb|EEU27080.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|315029734|gb|EFT41666.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX4000]
          Length = 1109

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 335/1038 (32%), Positives = 543/1038 (52%), Gaps = 68/1038 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +      +G +       ++L     +GYQ+L++L S   +  +G   +
Sbjct: 62   IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
                S L +     L  +T  + G + + FF +  Q        F++L  + D   + ++
Sbjct: 110  AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244
                 ++ R   +       +LP VA      L++E+  A  VL ++  +    + SQ  
Sbjct: 161  HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTKEEGFAVTVLESIKENNQLNITSQT- 219

Query: 245  RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             P +   +YL+       +M+ I     E ++NT+++A  C   + +H  +LP F     
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAGNCRVDIPLHQKLLPHF----P 272

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +   + LR   +  L  R+        +  + Y++RL+ EL +I  M F  YFLIV
Sbjct: 273  VLANQTAGSYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+
Sbjct: 326  WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +P
Sbjct: 386  DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L 
Sbjct: 446  NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+ +   +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+
Sbjct: 505  NLVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLN 563

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP +D  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI 
Sbjct: 564  QIPLNDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            V+  RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ K
Sbjct: 624  VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++
Sbjct: 684  KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I + 
Sbjct: 744  KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +++KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +
Sbjct: 804  FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863

Query: 898  RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R QL   L+ NIQ     +     +  E +   E          E+ +      R E E+
Sbjct: 864  RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015
            + LG Y SGHP + +K    K  +    + V  +  N   +L   V + +  +T+KG ++
Sbjct: 912  QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +         FP
Sbjct: 968  AFVDGDDTTGSISLTLFP 985


>gi|193216861|ref|YP_002000103.1| DNA polymerase III subunit alpha [Mycoplasma arthritidis 158L3-1]
 gi|193002184|gb|ACF07399.1| DNA polymerase III subunit alpha [Mycoplasma arthritidis 158L3-1]
          Length = 999

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 312/916 (34%), Positives = 486/916 (53%), Gaps = 96/916 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +++ ++S YS L+  + L+N+++    +    +AIT+  N FS   F +K  A  ++ I
Sbjct: 3   LINIHLNSIYSFLQSTIQLDNLIENALKNNVEYLAITERGNFFSFAPFYEKCQAHKLKSI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G  +DI++        QGK P+         +  A+    L EL +  Y +   K+   
Sbjct: 63  FGLDVDIEI--------QGK-PYR-------FILHAKNNTGLFELFNLSYDILSNKKL-- 104

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               +L ++     I+        +   ++  + QV +           D  Y++L  H 
Sbjct: 105 ----YLDDVANNKNIIFIE----HVLDGYYKKTKQVLDY----------DNHYISLGLHE 146

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                                  + N++F++E     H +L  ++H   +   D   +  
Sbjct: 147 ----------------------VSENAVFINEN---LHKIL--ISHHNAIMDFDDNSLIK 179

Query: 251 DHYLKNRSEMVS------------IFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIE 297
              L N   + S            + +DL + L   T E+ + C F L  +  ILP+F  
Sbjct: 180 ILALMNEDAINSNATFDILEFGFAVATDLEKKLITKTNELMQGCYFELPKNDYILPKFQN 239

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
           +   D  K  +  ++N  V   E         K     +Y+ RL  E+++I ++KF  YF
Sbjct: 240 ELNLDSTKYLQTLIKNNIVKRFE---------KSAWNDEYKLRLLHEMSIIEKLKFEDYF 290

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           LI+ D++ WAKKN I +GPGRGS AGS+ +Y L IT++DPL++ L+FERFLNP+R+SMPD
Sbjct: 291 LIIQDWVNWAKKNKIAIGPGRGSAAGSLVSYILGITNVDPLKYGLIFERFLNPERVSMPD 350

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            DID   +RR EVI Y+  KYG  +VA I+TF SL  K+A+RDV R   +  + ++ + K
Sbjct: 351 IDIDVQDNRRQEVIEYLNKKYGSSQVANIVTFASLGKKSAIRDVMRTYDVSPAMINEVSK 410

Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVD-----RLLEISQKLEGLYRHASTHAAGI 532
           LI         L+    + +F  A  +    D     ++L  + +LEG YR   THAAG+
Sbjct: 411 LIGLKEGSL--LEEYQSNKKFALALNSLNKEDANFSTKILNYASQLEGFYRQTGTHAAGV 468

Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQ 591
           +I  +P++Q++P Y+ +   +  TQ +M+++E  GL+K D LGLKTLT +Q+ L      
Sbjct: 469 IIAPKPINQIIPTYK-IEDGIQQTQVSMEYLEHFGLLKMDILGLKTLTTIQEVLLQIKKT 527

Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
           + + +DL+ I ++D  T+ LL T  T+GIFQLES GM +AL+ +  D   DI+A +SLYR
Sbjct: 528 KNLDLDLAKIKYEDQLTFDLLNTGSTVGIFQLESFGMTKALKQIHVDSFNDIVATISLYR 587

Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           PGP+DN+ VY  RKN  E I SI    D ++K T G+IIYQEQ+MQI Q ++  S S+AD
Sbjct: 588 PGPMDNLKVYAKRKNAHEPIPSISKAYDEIVKGTYGIIIYQEQIMQIVQAVANLSFSQAD 647

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +RR + KK  +EM   K  F++ A KNG S+  A+NIFEL++KFADYGFNKSHA +YA+
Sbjct: 648 NIRRIISKKKVDEMHAVKTNFVNSAIKNGYSEKDALNIFELISKFADYGFNKSHAVSYAM 707

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
           ISYQ A++K HYP+EF +A ++      E I +F  +A+   I+I+ P +N    +  + 
Sbjct: 708 ISYQMAYLKAHYPLEFYSAIISSAHGAHETIARFSAEAKSLGIEIISPDINLSNQNATIL 767

Query: 832 DNRIYYSLAAIKGVGTTTARHIME-ASADKPF-DSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +  I   L  IKG+G  T R I+E    + P+ + L  F   +  K      LE L+ A 
Sbjct: 768 NKAIVLPLNMIKGIGPETVRLILEDRKINGPYRNFLHLFVCLMHIKNFGLANLEILIKAN 827

Query: 890 ALDCFGYSRMQLLQSL 905
           AL  F  ++  +L  +
Sbjct: 828 ALRTFNINQATMLNEI 843


>gi|227548935|ref|ZP_03978984.1| DNA polymerase III subunit alpha [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227078960|gb|EEI16923.1| DNA polymerase III subunit alpha [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 1186

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 330/1011 (32%), Positives = 531/1011 (52%), Gaps = 55/1011 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + K+ SFVHL  H+ +S+L+G   ++ + D++     PA+ +TD  N+F +  F ++   
Sbjct: 1   MAKNSSFVHLHNHTEFSMLDGMAKVDLLADEVIRQGMPAVGMTDHGNMFGSNAFYRRMVE 60

Query: 65  AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113
           AG++PIIG +  +  + + N K    G TP      +          +L   A G + L 
Sbjct: 61  AGVKPIIGIEAYMAPESRFNKKRVLWG-TPDQKRDDVSASGAYLHQTMLAENATGLRNLF 119

Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
           +L +      Q  +  R+    + E   +G+I  TG  SG +           A +    
Sbjct: 120 KLSTLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFDAALEAAAM 178

Query: 174 FKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
           ++ ++G D  ++ L  H  + +R     ++++    ELP + TN+  ++ E    AH+ +
Sbjct: 179 WQDIYGKDNYFLELMDHGLHIERRVRDDLLKIGEILELPPLVTNDCHYVLESQAPAHEAM 238

Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIF-SDLPEALENTVEIARRC---SFILQ 286
           + V     +  +DR +     +Y+K+ ++M  I+ S +P+  +NT+ IA R    S + +
Sbjct: 239 LCVQTGKTMMDQDRFKFDGTGYYIKSAAQMREIWDSTVPDGCDNTLWIAERVGDYSELWE 298

Query: 287 VHAPILPRFIEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            H    P       D  + E     LR + + GLE R     +      Q+Y  R ++E+
Sbjct: 299 EH----PHDRMPVADVPEGETPTTWLRKEVMRGLEERFPGSEVP-----QEYIDRANYEV 349

Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
           +VI    +  YFLIVA+ I+ A++  I VGPGRGS AG++ AYALTIT+IDP+   LLFE
Sbjct: 350 DVIDMKGYPSYFLIVAEIIKHAREIGIRVGPGRGSAAGALVAYALTITNIDPIEHGLLFE 409

Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
           RFLNP+R S PD DIDF   RR E+I Y   ++G +++AQ+ITFG+++ K A++D  +  
Sbjct: 410 RFLNPERPSAPDIDIDFDDRRRGEMITYAAERWGEDKIAQVITFGTVKTKQAIKDAAKVW 469

Query: 466 --QMPYSQVDRL-CKLIPNDPAHPVSLQAIADDSRFREARLA--------DPSVDRLLEI 514
             Q  +   DR+   L P   A  + L  I D    R    A        DP V ++ E 
Sbjct: 470 FGQPGFQMADRINSALPPAIMAKDIPLVGITDPEHERYPEAAEVRTLIETDPDVAKIYET 529

Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
           ++ LEG+ R A  HA  +++   PL + +PM++       +T ++    E  GL+K DFL
Sbjct: 530 ARGLEGVVRQAGVHACAVIMASVPLMEHIPMWKRPADGALITGWDYPACEAIGLLKMDFL 589

Query: 575 GLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
           GL+ LT++  ++ +    RGV +DL  +  D+   Y LL+   TLG+FQL+S GM+  L+
Sbjct: 590 GLRNLTVIGDAMANIEKNRGVTIDLETLDIDNAAVYELLSRGDTLGVFQLDSGGMQDLLK 649

Query: 634 GMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQG 687
            M+P    DI+A ++LYRPGP  +     Y +RKNG++ I  IHP L +P+   L ET G
Sbjct: 650 RMKPTGFNDIVASLALYRPGPMGVKAHEAYADRKNGRKPITPIHPELEEPLREILDETYG 709

Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
           +I+YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + ++  +F  G   NG SK    
Sbjct: 710 LIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAEEYSKFSEGMFSNGFSKDAVD 769

Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
            ++  +  FA Y FNKSHAA YA++SY TA++K +Y  E++AA +T   D  +K   +  
Sbjct: 770 ALWGTIEPFASYAFNKSHAAGYALVSYWTAYLKANYTAEYMAALLTSVGDKKDKSAIYLA 829

Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLE 866
           D R   I ++ P +N    +F    + I Y LAA++ VG      I E    K  F S  
Sbjct: 830 DCRHLGISVLQPDINESEENFMAVGSDIRYGLAAVRNVGVEVVESIKETRRTKGAFTSFS 889

Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNK 922
           D+  +++    N+R+ ESL+ AGA D  G+ R  L+     ++D++    +  +K + + 
Sbjct: 890 DYLDKIELLACNKRITESLIKAGAFDSLGHPRKGLMLVQEDAVDSVLTTKKAADKGQFDL 949

Query: 923 HENIFAHEKGTFSDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYK 972
             + FA E G      T++    E +       E+ +LG Y SGHPLD Y+
Sbjct: 950 FAS-FAGEDGAEQAVFTIDVPDDEWDRKHTLALEREMLGLYVSGHPLDGYE 999


>gi|307289993|ref|ZP_07569918.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0411]
 gi|306498951|gb|EFM68444.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0411]
          Length = 1109

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 333/1036 (32%), Positives = 541/1036 (52%), Gaps = 64/1036 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +      +G +       ++L     +GYQ+L++L S   +  +G   +
Sbjct: 62   IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187
                S L +     L  +T  + G + + FF +  Q        F++L  + D   + ++
Sbjct: 110  AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244
                 ++ R   +       +LP VA      L++E+  A  VL ++  +    + SQ  
Sbjct: 161  HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTKEEGFAVTVLESIKENNQLNITSQT- 219

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             P +   +YL+     +     +   E ++NT+++A  C   + +H  +LP F       
Sbjct: 220  -PEIEGLNYLREAETTMEQILQIAGAEVVQNTIQLAGNCRVDIPLHQKLLPHF----PVL 274

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +   + LR   +  L  R+        +  + Y++RL+ EL +I  M F  YFLIV D
Sbjct: 275  ANQTAGSYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIVWD 327

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D 
Sbjct: 328  VMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDI 387

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN 
Sbjct: 388  PDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNK 447

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  L
Sbjct: 448  LKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNL 506

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+ +   +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ I
Sbjct: 507  VPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQI 565

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P +D  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+
Sbjct: 566  PLNDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVF 625

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK 
Sbjct: 626  IRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKK 685

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K+ +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K 
Sbjct: 686  KDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKV 745

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLA 840
            HYP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  +
Sbjct: 746  HYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFS 805

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            ++KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R 
Sbjct: 806  SLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRR 865

Query: 900  QLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
            QL   L+ NIQ     +     +  E +   E          E+ +      R E E++ 
Sbjct: 866  QLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEEQY 913

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIGW 1017
            LG Y SGHP + +K    K  +    + V  +  N   +L   V + +  +T+KG ++ +
Sbjct: 914  LGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQMAF 969

Query: 1018 VTFSEPAKEYEANFFP 1033
            V   +         FP
Sbjct: 970  VDGDDTTGSISLTLFP 985


>gi|259046884|ref|ZP_05737285.1| DNA polymerase III, alpha subunit [Granulicatella adiacens ATCC
            49175]
 gi|259036507|gb|EEW37762.1| DNA polymerase III, alpha subunit [Granulicatella adiacens ATCC
            49175]
          Length = 1117

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 348/1052 (33%), Positives = 538/1052 (51%), Gaps = 92/1052 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV SSYSLL+  + LN  +          +A+TD   L  A+EF ++    GIQPI
Sbjct: 3    YTTLQVFSSYSLLKSTIRLNEYVATGKLLGYKQLALTDDGVLHGAVEFYERCIQNGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC  +I  + +                +V+    ++GY+ L++L +   L  QG    +
Sbjct: 63   LGCTFEIAWKSDASKKEM----------LVVYAKGSKGYESLLKLST---LYQQGLTWTK 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF-NSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
                W+     +  I+L      P D  +   NS    E  L   K+ + G  + + + R
Sbjct: 110  EMTEWIATHSEDVKIVLP-----PTDSEWVAANSKGRLEAVLKAVKEEYAGVEIAIGITR 164

Query: 189  H----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--Q 242
                   +++ RE     +     LP VA + S +L+  DY    VL A+     +S  Q
Sbjct: 165  EMVERSEFEKMREG----IEAAGVLP-VAFSVSRYLNATDYFPWKVLQAIRLGGTLSFTQ 219

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI--LQVHAPI----LPRFI 296
            +D    T    L   + M  +F    + +E  V ++    F   L V  P+    LP+F 
Sbjct: 220  ED---ATGSESLPEATSMAKVF----QVVEGGVLLSNLEKFTKDLVVEIPLRDTMLPKFP 272

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSG 355
              +              K  A     L + A+ + G     Y  RL  EL VI  M F  
Sbjct: 273  VPD-------------GKTSAQFLYELCEAAMLEMGVTTPIYVNRLKEELAVIHEMGFDD 319

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV D ++ A++  I  G GRGS AGS+ AY L IT +DP+R+ LLFERFLN +R +M
Sbjct: 320  YFLIVWDIMRHAREKGIQTGAGRGSAAGSLVAYLLHITGVDPIRYHLLFERFLNRERYTM 379

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF  D+R++++ Y+ +KYG++ VAQI+TFG+L AK  LRDV +        +  +
Sbjct: 380  PDIDLDFPDDKREDILAYIVSKYGNQNVAQIVTFGTLGAKQVLRDVCKVFG---ENIITV 436

Query: 476  CKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             K   N     V+L Q   ++  FRE   +     +L ++++ LEGL RH+S HAAG+V+
Sbjct: 437  QKFSNNIAQGKVTLEQTYKENKAFREHIESSERNRKLYQVAKALEGLPRHSSVHAAGVVL 496

Query: 535  GDRPLSQLVP-MYRDV-------RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
                L++ VP M RD         +D  +TQ+ M+ +EK GL+K D LGL  LTLL K++
Sbjct: 497  SQDALTKTVPLMKRDKGYSASLQEADWMLTQYAMQAVEKVGLLKMDLLGLSNLTLLHKAI 556

Query: 587  DFLAQRGVK--VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
                Q+  K  +D++ IP DD  T+ L     T GIFQ ES G+R+ L+ M+P   ED++
Sbjct: 557  Q-QTQKITKKELDITKIPLDDPRTFELFQKAQTNGIFQFESDGIRRVLKEMKPTEFEDLV 615

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            A++SLYRPGP++ I  + NRK G E +   H  +  +L+ T G+++YQEQVMQ A  ++G
Sbjct: 616  AVLSLYRPGPMEQISHFINRKKGTEIVQYPHASLQRILEPTYGILVYQEQVMQAASEMAG 675

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            +SL EAD+LRRA+GKK  E +  QKE+F+ GA   G  +  A  +++ + KFA+YGFNKS
Sbjct: 676  FSLGEADILRRAIGKKNSETIAAQKEKFVQGAVSKGYKQEDAETVYDYIEKFANYGFNKS 735

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HA AYA++SYQ A++K +YP  F  A          K++ +  +ARQ  I+I+PPS+N  
Sbjct: 736  HAVAYAMLSYQLAYLKANYPTAFFTALFQNASAKSSKLQDYLVEARQLGIKILPPSINNS 795

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLE 883
              DF   D+ +   L +IKG+       I++   +  PF   +DF  R+ ++     +L 
Sbjct: 796  FADFVANDSGVIVGLNSIKGIRRDFVESIVKNRYEYGPFKGFQDFAYRMGAQYTKEPLLV 855

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            +L+ AGA D FG +R  L  ++D + K  ++   N              +  D + +   
Sbjct: 856  ALINAGAFDEFGETRATLKANVDAVAKSVKFHGLNL-------------SLEDDLEVAFT 902

Query: 944  SVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
             VE   +  R   E  VLGF  S HP   Y P+++   I+  +   +      +R   ++
Sbjct: 903  HVEEEPLLQRIGEEIEVLGFSISPHPSSKYDPLMKSGWIQAIQ---SVFEEGYMRFVGLI 959

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V  ++  TRKG ++ +VT  + +   +   FP
Sbjct: 960  VDIRKISTRKGEKMAYVTLQDASGMIDVVVFP 991


>gi|317496209|ref|ZP_07954569.1| DNA polymerase III [Gemella moribillum M424]
 gi|316913784|gb|EFV35270.1| DNA polymerase III [Gemella moribillum M424]
          Length = 1092

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 319/982 (32%), Positives = 537/982 (54%), Gaps = 83/982 (8%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           ++ +LQVHS+Y LL   +    + +K+ +D Q ++ I D N ++ A++  ++A   GI  
Sbjct: 2   AYYNLQVHSAYDLLNSTIKYKELFEKLKSDNQDSVVIVDPN-MYGAIKAYKEAKKTGINL 60

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I G ++ +    +    N             +L      + +L EL +R   L++ + S+
Sbjct: 61  ISGLEVKLGYGISFLTFN-------------ILCKNERMFHKLFELSTR--FLNEEELSL 105

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
              L+ +++   + ++++T      I+ ++        +++L+ +   FG     N   +
Sbjct: 106 EAFLAEIKDFKDDFVLIVTSELRDSIEFSYL-------QEQLIGYDFYFGFNEKFNYSIY 158

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             YD                 +V T  S +L+++ Y+   V  A+  +T ++ ++     
Sbjct: 159 TYYDN----------------IVYTKPSYYLNKDHYQQVVVARAIRDNTKLNIRELTTTI 202

Query: 250 PDHYLKNRSEMVSIF-SD-------LPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            DH++++  +   +  SD       L ++L+N   I  +C + L+     LP++I  E +
Sbjct: 203 GDHFVRSVQDFSLLLESDNEEYIFMLQKSLDNQQRIIDKCHYELEFSGYHLPKYIYGEHE 262

Query: 302 DI--QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
           D+  +   ++ LR     G + +L    + K Y+A  Y++R ++EL +I  M F+ YFLI
Sbjct: 263 DVFAKMSAKDYLRYLVQKGAKEKL----VGKDYYA--YKKRYEYELKIIDDMGFNDYFLI 316

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V DF+++AK N I VG GRGS AGS+  Y L IT+ DPL ++LLFERFLN +R+SMPD D
Sbjct: 317 VYDFVKYAKDNGILVGAGRGSAAGSLVCYLLNITEADPLEYNLLFERFLNKERISMPDID 376

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           IDF   RRDEVI+YV+ KYG ++VAQIITF + Q+K+A R+  R LQ  +++ D   K I
Sbjct: 377 IDFQDTRRDEVIKYVEGKYGEDKVAQIITFTTFQSKSAARETARILQ--FNEED--LKFI 432

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGD-R 537
            ++ +   +L    + S      +    ++R    I+  LE L ++ S HAAGIVI D +
Sbjct: 433 SSNVSSTRTLTECYEVSENLRNFVNKSDLNRRWFSIALSLEELPKNPSVHAAGIVISDDK 492

Query: 538 PLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
           PL +  P+     S++   +TQ+ M  +E  GL+K DFLG++ LT++   ++ + +    
Sbjct: 493 PLIKHTPL---AASNVTKYLTQWTMDDVESVGLLKIDFLGIRYLTMVSNIVEQIKKDNPS 549

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            D++ I + D + Y+L T   T GIFQ ESSGM++ L  ++P    DI+A+ +LYRPGP+
Sbjct: 550 FDITKINYADQKVYNLFTQGRTEGIFQFESSGMKEKLRLLRPTEFNDIVAMNALYRPGPM 609

Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             I  Y  RK+G+EK+V  HP ++ +L++T GVI+YQEQ+M IA   +  SL+EAD +RR
Sbjct: 610 AQIETYVRRKHGEEKVVYPHPHLEKILRDTYGVIVYQEQIMLIAVNFAHMSLNEADNMRR 669

Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
           A+ KK KE+++     FI  +   G    IA  +F+L+  FA+YGFNKSHA  Y++++Y+
Sbjct: 670 AVSKKKKEDLEYYGRIFIEKSVAAGYDLNIAKKLFDLIVTFANYGFNKSHAVVYSMLAYR 729

Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            A++K +Y   F+ A +   + + +KI ++ Q+     I +  P VN    DF V    I
Sbjct: 730 LAYLKVYYTKYFMTALLNNVISSEKKINEYKQELNNLGITLAKPDVNVSLSDFSVYKQDI 789

Query: 836 YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            ++L AIK VG  ++  I++   +   +  ++DF  R++ KK++ +  +SLV AGALD F
Sbjct: 790 VFALTAIKNVGYRSSYEIVQDRLNFGKYQDIDDFLKRMN-KKVDYQAAQSLVKAGALDTF 848

Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNR--TNKHENIFAHEKGTFSDKITLEKFSVENSSV-- 950
           GY+R  L+      +K   + E +R   N      + E G     +TL+   VE+  +  
Sbjct: 849 GYNRATLM------KKVKDYYEDDRKYINNVRVALSAESG-----LTLKVEEVEDYPIAE 897

Query: 951 RFENEQRVLGFYFSGHPLDVYK 972
           + + E+ V G YF  HP+ V K
Sbjct: 898 KIQMEKEVTGTYFLKHPVQVEK 919


>gi|298528510|ref|ZP_07015914.1| DNA polymerase III, alpha subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512162|gb|EFI36064.1| DNA polymerase III, alpha subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 775

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 293/785 (37%), Positives = 443/785 (56%), Gaps = 32/785 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL  H+ YSL EG + + ++  +    + PA++ITD+ NLF A++   KA   GI+PI
Sbjct: 4   FCHLHCHTEYSLFEGCIRIEDLCSRAVEYKMPAVSITDSGNLFGAMKLYLKAREYGIKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129
           IGC++++  +   K+T++    +     +VLL     GY  L+ LVS  ++  QG     
Sbjct: 64  IGCEVNLSPE---KITDRDSFNY----HLVLLAMDLHGYHNLVRLVSAGWM--QGFYYKP 114

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPID---RAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
           R+    LQ   + GLI L+    G +    R   F+ +  A ++   +  +F DR Y+ L
Sbjct: 115 RVDKDMLQTY-SNGLIALSACMEGEVQYLLRTKGFDHALEAARQ---YASIFPDRFYLEL 170

Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           +     D+     ++++++    LP+VATN+  +L+ +D EA+  L  +  +  +   + 
Sbjct: 171 EASGLKDQAEVNGRLMEMSEKTGLPMVATNDCRYLAPQDAEAYAALRCIQKNERLDHHNL 230

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + + Y K+  EM   FS  P ALEN  +I  +C   L+     LP++     D + K
Sbjct: 231 N--SRELYFKSPEEMEKEFSHCPTALENVQKIIEQCGLDLEYPKRHLPKYTPSAEDTLDK 288

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
           E    L   +  GLE +LA   +       +Y  RLD EL VI     S YFL+V D++ 
Sbjct: 289 E----LVALSEKGLEEKLAN--LPYEVDRDEYFTRLDKELKVICEQGESWYFLVVHDYVS 342

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           WAK   I VGPGRG   GS+TAYAL IT +DP+R  L FE+F N  +  + D D+DFC +
Sbjct: 343 WAKSRGIVVGPGRGFAPGSMTAYALGITGVDPIRHRLYFEKFFNT-KTGLKDIDVDFCHE 401

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EV  Y++ KYG         F + +A+  LRDVG+ +     QV+++  LIP     
Sbjct: 402 RREEVFEYLREKYGQANAVYPSVFVASKARVVLRDVGQVMGFSLDQVEQITSLIPEKIGI 461

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            VS +A+  +   R     +  + R L+I ++L+ L RH S HAAGIVI +  L   +P+
Sbjct: 462 TVS-KALEMEPALRNLMNDNEEMQRYLDICKRLDRLVRHVSIHAAGIVISNEKLQSYLPL 520

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFD 604
           Y D    + V+Q++   + + G IKFDFLGLK L+L+ ++L  +     +V D+  +P D
Sbjct: 521 YSDQNKAI-VSQYDWDDLRRLGFIKFDFLGLKYLSLISRTLALIKVNKKQVPDMENLPLD 579

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
           D  T+ LL    T G+FQLESSGMR  L  + P C EDIIAL ++YRP  + N +   + 
Sbjct: 580 DTLTFDLLDGGLTEGVFQLESSGMRNTLMDLTPTCFEDIIALHAIYRPAFLQNGIDKDFI 639

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            RK+G   +   HP ++P+L ET G+IIYQEQ+M+IAQ L+GYSL E D LRR +GKK  
Sbjct: 640 KRKHGLVSVEYPHPDLEPILNETHGLIIYQEQLMEIAQTLAGYSLEEGDTLRRVLGKKEA 699

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             M +Q+E+FI  A   G+ +  A ++FEL+ +FA Y F+KSH+ AY++I+YQTA++K H
Sbjct: 700 TTMAEQREKFIQKARDKGLDQLTAKHVFELMERFASYTFSKSHSVAYSMIAYQTAYLKAH 759

Query: 783 YPVEF 787
           YP EF
Sbjct: 760 YPEEF 764


>gi|329768254|ref|ZP_08259755.1| hypothetical protein HMPREF0428_01452 [Gemella haemolysans M341]
 gi|328837453|gb|EGF87082.1| hypothetical protein HMPREF0428_01452 [Gemella haemolysans M341]
          Length = 1089

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 326/1047 (31%), Positives = 557/1047 (53%), Gaps = 100/1047 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            + +LQVHS+Y LL   +   ++  K+A D Q ++ I D N ++ A++  +++  AGI  I
Sbjct: 2    YYNLQVHSAYDLLNSTIKYESLFLKLARDNQRSVVIVDPN-MYGAIKAYKESKRAGINLI 60

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G ++ +         N             +L  + + + +L+E+ ++   ++  + ++ 
Sbjct: 61   QGLEVSLGYGIGFLKFN-------------ILCKSEKMFYKLLEISTK--FMNGEEWTIE 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               S ++E   + ++++       ++ ++  N                   L+ N   + 
Sbjct: 106  DFSSEMKEYSDDFVLIVVDELRDSMEFSYLNN-------------------LFSNYDFYF 146

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G++   ES  V   Y+    +V T  S +L++E+Y+   V  A+  +  ++ ++   ++ 
Sbjct: 147  GFN---ESFQVS-PYSFYENIVYTKPSYYLNKENYQQVIVSRAIRDNKKLNIQELTIISG 202

Query: 251  DHYLKNRSEMVSIFSDLPEAL--------ENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            D +++ + +   I +   E L        EN   I  +C + L      LP+++  E +D
Sbjct: 203  DEFVRKQKDFEEILALGDEELQMIFKKSFENQQNIVDKCQYELNFSGYHLPKYVYGEKED 262

Query: 303  I-----QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I      KE  + L  K V G  V         G     Y++R  +EL +I  M F+ YF
Sbjct: 263  IYSKFSSKEYLHFLVQKGVKGKLV---------GKDLYPYKKRYSYELKIIDEMGFNDYF 313

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DF+++AK N I VG GRGS AGS+  Y L IT+ DPL ++LLFERFLN +R+SMPD
Sbjct: 314  LIVYDFVKYAKDNGILVGAGRGSAAGSLVCYLLDITEADPLEYNLLFERFLNKERISMPD 373

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             DIDF   RRDEVI+YV+ KYG ++VAQIITF + Q+K+A R+  R LQ      ++  K
Sbjct: 374  IDIDFQDTRRDEVIKYVEEKYGQDKVAQIITFTTFQSKSAARESARILQFD----EQTLK 429

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVD-RLLEISQKLEGLYRHASTHAAGIVIGD 536
             I ++ +   +L+   + S    A +   +++ R   I+  LE L ++ S HAAGIVI D
Sbjct: 430  FISSNISSTRTLKECYEMSEELRAFINQSNINKRWFSIALSLENLPKNPSVHAAGIVISD 489

Query: 537  -RPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
             +PL    P+     S++   +TQ+ M  +E  GL+K DFLG++ LT++   ++ + +  
Sbjct: 490  DKPLVNYAPL---AESNMTKYLTQWTMDDVESVGLLKIDFLGIRYLTMVSSVVEEVKKEN 546

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
               D++ I + D + Y L     T GIFQ ESSGM++ L  ++P    DI+A+ +LYRPG
Sbjct: 547  PTFDITKINYQDPKVYELFAKGKTEGIFQFESSGMKEKLNLLKPTEFNDIVAMNALYRPG 606

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+  I VY  RKN +E++V  HP ++ +LK+T GVI+YQEQ+M IA   +  SL+EAD +
Sbjct: 607  PMAQIEVYVRRKNKEEQVVYPHPHLEKILKDTYGVIVYQEQIMLIAVNFAHMSLNEADNM 666

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRA+ KK KE+++     F+  +   G    +A  +F+L+  FA+YGFNKSHA  Y++++
Sbjct: 667  RRAVSKKKKEDLEYYGRIFVEKSVAVGYDLQVAKKLFDLIVTFANYGFNKSHAVVYSMLA 726

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y+ A++K +Y   F+ A +   + + +KI ++ Q+     I ++ P VN    +F V  N
Sbjct: 727  YRLAYLKVYYTKYFMTALLNNVISSEKKINEYKQELNNLGINLVKPDVNRSLSNFSVYKN 786

Query: 834  RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I ++L AIK VG  +   I++   +   +  ++DF  R++ KK++ +   SLV AGALD
Sbjct: 787  DIVFALTAIKNVGYRSGYEIVQDRINFGRYLDIDDFLKRMN-KKVDYQAAVSLVKAGALD 845

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNR--TNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             FGY+R  L++ +D+      +   NR   N      + E G     +TL+   VE+ S+
Sbjct: 846  TFGYNRATLMKKVDD------YYSDNRQYINNVRVALSAESG-----LTLKVEEVEDYSI 894

Query: 951  --RFENEQRVLGFYFSGHPLDVYKPILRKMGIK--GYEESVATIRGNNIRLAAMVVSKQQ 1006
              + + E+ V G YF  HP+ V K     + ++  G E S + +          ++++++
Sbjct: 895  TEKIQMEKEVTGTYFLKHPVQVEKEKYSYLPLQYIGAELSDSYVE---------IITRKE 945

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             KT+ G  + ++T ++   +Y+   FP
Sbjct: 946  IKTKNGDYMAFLTVNDGKNDYDVTVFP 972


>gi|298500380|ref|ZP_07010185.1| DNA polymerase III subunit alpha [Vibrio cholerae MAK 757]
 gi|297541073|gb|EFH77127.1| DNA polymerase III subunit alpha [Vibrio cholerae MAK 757]
          Length = 637

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 268/651 (41%), Positives = 389/651 (59%), Gaps = 27/651 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G++
Sbjct: 4   PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +  
Sbjct: 64  PIIGADF----------TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 113

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L R
Sbjct: 114 PVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 172

Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  +       + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    RP+
Sbjct: 173 TGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPK 232

Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F           
Sbjct: 233 NYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----GMA 287

Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +F
Sbjct: 288 IEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEF 347

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           IQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348 IQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P DP
Sbjct: 408 MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP 467

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              +    IA+ +  +E   AD  V  L++  + LEG  R+A  HA G+VI    ++   
Sbjct: 468 GMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFA 526

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
           P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K     V +
Sbjct: 527 PIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRI 586

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
             IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L
Sbjct: 587 EAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVAL 637


>gi|282897054|ref|ZP_06305056.1| DNA polymerase III, alpha subunit [Raphidiopsis brookii D9]
 gi|281197706|gb|EFA72600.1| DNA polymerase III, alpha subunit [Raphidiopsis brookii D9]
          Length = 882

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 302/821 (36%), Positives = 463/821 (56%), Gaps = 81/821 (9%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA--GI 67
           SFV L +HS YSLL+GA  +  ++++  A    ++A+TD   ++ A+E   K C +  G 
Sbjct: 2   SFVPLHLHSDYSLLDGASQIPELVEQAIALGMNSLALTDHGVMYGAIELI-KICRSKPGF 60

Query: 68  QPIIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
           +PIIG ++     DI+ Q+     +Q           V+L    +GY+ L++L +  +L 
Sbjct: 61  KPIIGNEMYIINGDIEKQERRPRYHQ-----------VVLAKNTKGYKNLVKLTTISHLK 109

Query: 123 D-QGKQSV-RICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             QGK    R C++  L E   EGLI+ +   +G I +A      + A K    +K +FG
Sbjct: 110 GTQGKGIFSRPCINKNLLEEHKEGLIVTSACLAGEIPQAVLGGKLETARKVARWYKGVFG 169

Query: 180 DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
           +  Y+ +Q H    DR    ++V++A    +  +ATN+S ++S  D EAHD L+ +    
Sbjct: 170 EDFYLEIQDHGSQEDRIVNVELVKIARELGIKFIATNDSHYISCFDVEAHDALLCIQTGK 229

Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSF--ILQVHAP 290
           +++   R R +   YLK+  EM  +F D      + EA+  T E+A +     I+     
Sbjct: 230 LIADDKRMRYSGTEYLKSTQEMQLLFRDHLTDDVIAEAIATTTEVAEKVEVYNIMDEPKI 289

Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVI 348
             P        D   EE       A  GL  RL +    K  +  D  Y++RL++EL +I
Sbjct: 290 PTPPIPTGHTPDTYTEE------VAWQGLLKRLNR----KSRNEVDTLYKERLEYELKMI 339

Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
            +M FS YFL+V D+I++A+ +NIPVGPGRGS AGS+ AYA+ IT+IDP+   LLFERFL
Sbjct: 340 EQMGFSSYFLVVWDYIKFARDHNIPVGPGRGSAAGSLVAYAMGITNIDPVHHGLLFERFL 399

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
           NP+R SMPD D DFC ++RD+VI YV  KYG ++VAQIITF  L +KA L+DV R L +P
Sbjct: 400 NPERKSMPDIDTDFCIEKRDQVISYVTEKYGADKVAQIITFNRLTSKAVLKDVARVLDIP 459

Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRH 524
           Y + D++ K+IP     P  L+ +  D      F+     +  V R ++++ ++EG  + 
Sbjct: 460 YGEADKMAKMIPVVRGKPTKLKVMISDETPEPEFKAKYDKEQHVRRWIDMAMRIEGTNKT 519

Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
              HAAG+VI   PL ++VP+ ++    + +TQ+ M+ +E  GL+K DF G +      K
Sbjct: 520 FGVHAAGVVISSEPLDEIVPLQKNNDGSV-ITQYFMEDLESLGLLKMDFFGSEKSDPNSK 578

Query: 585 SLDFLAQ-RGVKVD-------------------LSLIPFDDHETYHLLTTKGTLGIFQLE 624
           ++D + Q RG  +D                    S +P D  + Y LL +    G+FQLE
Sbjct: 579 TIDLIEQNRGYTIDPDDITRQERKAQKILAKGEYSTLPKDVAQAYSLLESGDLEGVFQLE 638

Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPML 682
           SSGM+Q +  ++P  IEDI ++++LYRPGP+D  ++  + NRK+G+E I     ++ P+L
Sbjct: 639 SSGMKQIVRDLKPSNIEDISSILALYRPGPLDAGLIPKFINRKHGRESIDYESQILQPIL 698

Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            ET G+++YQEQ+M+IAQ ++GYSL +AD+LRRAMGKK   EM KQ+E+FI GA+KNG+ 
Sbjct: 699 NETYGIMVYQEQIMKIAQDMAGYSLGQADLLRRAMGKKKVAEMQKQQEKFIDGATKNGVK 758

Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           K +A  +F  + KFA+Y            +SY+T  +   Y
Sbjct: 759 KQVAEQLFADMLKFAEY-----------CLSYETEVLTLEY 788


>gi|315639541|ref|ZP_07894683.1| DNA-directed DNA polymerase III alpha subunit [Enterococcus italicus
            DSM 15952]
 gi|315484691|gb|EFU75145.1| DNA-directed DNA polymerase III alpha subunit [Enterococcus italicus
            DSM 15952]
          Length = 1101

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 282/794 (35%), Positives = 443/794 (55%), Gaps = 49/794 (6%)

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            L+   EM   F   PEALE   ++   C   L +H  +LP++     +  +    + L  
Sbjct: 219  LRPAEEMDQAFQKCPEALEELAKLVVLCQLELPLHQVLLPKYPVPNGESAK----DYLAY 274

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
                GL  R     IA   H   Y++RLD+EL +I +M F  YFLIV D + +A + NI 
Sbjct: 275  LCKQGLASR----QIA---HTSTYQRRLDYELRIIHQMGFDDYFLIVWDIMNFAHEQNIV 327

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
             G GRGS AGS+ +Y L+IT+IDP+   LLFERFLNP+R +MPD D+D   +RRD ++ Y
Sbjct: 328  TGAGRGSAAGSLVSYLLSITEIDPIDADLLFERFLNPERYTMPDIDLDIPDNRRDVILHY 387

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            V+ KYG + VAQI TFG++ AK  LRDV R   +  S+++R  K IPN     +  +A  
Sbjct: 388  VKEKYGADYVAQIATFGTMAAKMVLRDVARTFGLSQSEMNRWSKAIPNQLKITLK-EAYQ 446

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                 RE    +     L +I+ +LEGL RH STHAAG+VI D  L +LVP+ +    +L
Sbjct: 447  TSKSLRELVEMNEKNRLLFQIASQLEGLPRHVSTHAAGVVISDTNLRKLVPL-QAGSGEL 505

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL------SLIPFDDHE 607
             +TQF M  +E  GL+K DFLGL+ L+++  +L     +G+   +      ++IP +D +
Sbjct: 506  YLTQFAMNDVETVGLLKMDFLGLRNLSIIDDTL-----KGIYYQMKQCFTQAMIPKNDKQ 560

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY L     T+G+FQ ES+G+R+ L  ++P  +E++  + +LYRPGP+  I  Y  RKNG
Sbjct: 561  TYELFQRGETVGVFQFESAGIRKVLRDVRPANLEELAVVNALYRPGPMKMIDAYVKRKNG 620

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             EK   +   + P+L+ T G+++YQEQVMQ+A ++ G+SL EAD+LRRA+ KK +  +D+
Sbjct: 621  LEKSTYLDQSLAPILRSTYGIMVYQEQVMQVASMMGGFSLGEADILRRAISKKKRAVLDE 680

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+E+F  GA   G  + IA   ++ + +FADYGFN+SHA AY+ I+YQ A++KTHYP+ F
Sbjct: 681  QREKFYQGAQTKGYDRKIAEATYQYIERFADYGFNRSHAFAYSEIAYQMAYLKTHYPLPF 740

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVG 846
              A +     N  K++++  +A++  +  + PS+N     F +  +  I + LA+IKG+ 
Sbjct: 741  YRALLQSVQGNASKMREYISEAKRQGVVFLAPSINASYSGFSIESSEGIRFGLASIKGLR 800

Query: 847  TTTARHIMEASADK-PFDSLEDFCSRVDS---KKLNRRVLESLVFAGALDCFGYSRMQLL 902
                + ++    ++ PF S++ F  R++    K + + +LE LV  GA D    +R QLL
Sbjct: 801  KDFTQAVIRERKERGPFKSMDHFLLRLNQLNPKYIKKEILEPLVEVGAFDTIEPNRKQLL 860

Query: 903  QSLDNIQKYAQWVEKNRTNKHENI-FAHEKGTFSDKITLEKFSVENSSV--RFENEQRVL 959
            Q L+               K +N+ F+         + L+   V + ++  +   E+ +L
Sbjct: 861  QELEG--------------KRQNLAFSGGSMDMLALMPLKTTEVVDFTLPEKLTFEENLL 906

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G Y SGHP+  Y  + RK       + V    G  + L   + + ++ +T+KG ++ ++ 
Sbjct: 907  GVYVSGHPIQEYDDLRRKWQTTQLSDLVP---GTTVLLLGYLKNIREIRTKKGEKMAFLD 963

Query: 1020 FSEPAKEYEANFFP 1033
              +   E     FP
Sbjct: 964  IMDLGAERSVTLFP 977



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           ++ L   S+YSLLE  + L   + K       A+ + D N L   +EF Q    A I+PI
Sbjct: 2   YIPLATKSAYSLLESTIRLPQYVQKAHEYHYEALGLMDHNTLHGTIEFYQLCQKAKIKPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
           IG  LDI   D        +T +P       +  +  GYQ+L+EL ++  L
Sbjct: 62  IGLLLDISFAD--------ETSYP----FYFVAKSFAGYQQLMELSTKKML 100


>gi|229824039|ref|ZP_04450108.1| hypothetical protein GCWU000282_01343 [Catonella morbi ATCC 51271]
 gi|229786393|gb|EEP22507.1| hypothetical protein GCWU000282_01343 [Catonella morbi ATCC 51271]
          Length = 1116

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 316/964 (32%), Positives = 511/964 (53%), Gaps = 50/964 (5%)

Query: 16  VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75
           VHS+ SLL   L++ + ++         + + D ++L  AL+F  +  AAG++ +IG   
Sbjct: 5   VHSANSLLASTLTIPSYVEAAKERGYQILGLADVHSLQGALDFYNRCQAAGLKAMIGA-- 62

Query: 76  DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            I +   LK T          P +V  ++ A GY  LI L+ R   L     S      +
Sbjct: 63  TIKLPGALKQTQ-------VYPFLVYALNQA-GYYELIGLIRR---LSHQPLSPGAIWDY 111

Query: 136 LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYDR 194
           L +     L  ++ G +  +++    +  Q A   L   +++FG   +Y+ +     Y+ 
Sbjct: 112 LTQ-SCHNLFYISCGHASEVEQTLIHSGDQEASLVLERLEQVFGPGNVYLGVAAF-PYNP 169

Query: 195 YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                +   A  +++PLV       L++ D  +  VL A+  +  +  + R  +   HY+
Sbjct: 170 VEGEALKAFAKAYQVPLVVGQGVSTLNQGDAFSLKVLEAIGANETLDVELRA-MQGVHYV 228

Query: 255 KNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            N +++ + +    L + L N+ ++A R    L  +   LP+F   +           LR
Sbjct: 229 YNWADLEAQYVRLGLADCLTNSRQLADRMQVSLPQNQAFLPKFPTPD----HLPASQFLR 284

Query: 313 NKAVAGLE-VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
           +   + LE +R A  A+        Y+QRLD+EL VI  M FS YFLIV D I + + + 
Sbjct: 285 DLTQSALEDLRPADLAV--------YQQRLDYELEVIDSMGFSDYFLIVWDIIVYCQSHA 336

Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
           I VGPGRGS AGS+ +Y L IT +DP++++LLFERFLNP+R +MPD D+D   ++R +V+
Sbjct: 337 IRVGPGRGSAAGSLVSYLLGITRVDPIQYNLLFERFLNPERYNMPDIDMDIPDNKRQQVL 396

Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-Q 490
            YV  +YG E+VAQI T G+  A+AA+RD  R L      +    + IP +    +SL Q
Sbjct: 397 HYVVERYGQEQVAQIATLGTFGARAAMRDTLRVLGADSETLRVWARAIPKE--LDISLPQ 454

Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
           A    +  R+      +  +L +++Q +EGL RH STHAA +VI D+ L Q++P+    R
Sbjct: 455 AYQKSAALRQLVSQSETNQQLFQVAQTIEGLPRHISTHAAAVVIHDQALDQVIPVVE--R 512

Query: 551 SDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
            + P+ TQF M  +EK GL+K DFLGL+ L LL   +  + +     D+  I  +D +T 
Sbjct: 513 PNQPLMTQFTMYDVEKVGLLKMDFLGLRNLNLLDTIIKQVQKSQADFDIEAISMEDAQTL 572

Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
            L     T G+FQ ES G++Q L  +QP+  EDI+A+ +L+RPGP+  I  Y  R++GKE
Sbjct: 573 ALFRAADTNGVFQFESDGIKQVLRKLQPERFEDIVAVNALFRPGPMKQIDHYVARRHGKE 632

Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
              +IHP+++ +L  T G+I+YQEQVMQ+ Q ++G+SL +AD+LRRAMGKK  + M +++
Sbjct: 633 SYQAIHPILEEILAPTYGIIVYQEQVMQVCQRMAGFSLGQADLLRRAMGKKQADVMARER 692

Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
           E FI GA + GI   IA   ++ + +FA YGFN+SHA  Y+ +++Q A++K HYP+ F  
Sbjct: 693 EHFIRGAREQGIEPEIASATYDYIYEFASYGFNRSHAVVYSTLAFQLAYLKVHYPLAFYQ 752

Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
           A + +   N   +  +  +A++    ++  ++N   + F V   ++   L+AI+ +    
Sbjct: 753 ALLNMGSSNQTTMADYILEAKRHTGPLLGLNLNESQIGFSVSGQQLQVGLSAIRTLRHDF 812

Query: 850 ARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             HI+E      P+  L  F  R+  K L    LESL+  GA D  G +R  LL++LD +
Sbjct: 813 VSHIVEDRQLLGPYTGLLHFMQRLPKKWLKHEWLESLISVGAFDYTGMNRPTLLKNLDKL 872

Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
            +   +   N +     +F   +        +E     N S + + E  +LGF   GHP+
Sbjct: 873 MQSVTFSGGNLS-----LFPELEP------RIEWVEDWNPSQKRDKEVEILGFSLEGHPV 921

Query: 969 DVYK 972
             Y+
Sbjct: 922 ATYQ 925


>gi|255325317|ref|ZP_05366423.1| DNA polymerase III subunit alpha [Corynebacterium tuberculostearicum
            SK141]
 gi|255297882|gb|EET77193.1| DNA polymerase III subunit alpha [Corynebacterium tuberculostearicum
            SK141]
          Length = 1190

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 323/1020 (31%), Positives = 539/1020 (52%), Gaps = 63/1020 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+ SFVHL  H+ +S+L+G   ++ + D++   + PA+ +TD  N++ +  F ++   
Sbjct: 1    MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVRQEMPAVGMTDHGNMYGSDAFYRRMTG 60

Query: 65   AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113
            AG++PIIG +  +  + + N K    G TP      +          ++   A G + L 
Sbjct: 61   AGVKPIIGIEAYMAPESRFNKKRVLWG-TPDQKRDDVSASGAYLHQTMIAENATGLRNLF 119

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L S      Q  +  R+    + E   +G+I  TG  SG +           A +    
Sbjct: 120  TLSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFNEALEAAAM 178

Query: 174  FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            ++ ++G D  ++ L  H G D   R R+  ++++    +LP + TN+  ++ E    AH+
Sbjct: 179  WQDIYGKDNFFLELMDH-GLDIEKRTRDG-LLEIGRKLDLPPLVTNDCHYVLESQAPAHE 236

Query: 230  VLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQV 287
             ++ V         DR +     +Y+K+ ++M   + D+ P+  +NT+ IA R    +Q 
Sbjct: 237  AMLCVQTGKTFMDPDRFKFGGTGYYIKSAAQMRETWDDMIPDGCDNTLWIAER----VQD 292

Query: 288  HAPILPRFIEKECDDIQKEEENE----LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            +  I               E +     L ++ + GL+ R     +      ++Y +R  +
Sbjct: 293  YGEIWEEHTHDRMPIADVPEGHTPTSWLTHEVMEGLQKRFPGQDVP-----EEYIERAKY 347

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            E++VI    +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDPL   LL
Sbjct: 348  EISVIEMKGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGALVAYALTITNIDPLEHDLL 407

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R S PD DIDF   RR E+I Y   ++G ++VAQ+ITFG+++ K A++D  +
Sbjct: 408  FERFLNPERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAK 467

Query: 464  AL--QMPYSQVDRL-CKLIPNDPAHPVSLQAIADDSRFREARLA--------DPSVDRLL 512
                Q  +   DR+   L P   A  + L+ I D    R +  A        DP V ++ 
Sbjct: 468  VHFGQPGFQMADRINGALPPAIMAKDIPLKGITDPDHERYSEAAEVRQMVESDPDVKKIY 527

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            + ++ LEG+ R A  HA  +++    L   +PM++       +T ++    E  GL+K D
Sbjct: 528  DTARGLEGVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMD 587

Query: 573  FLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD---HETYHLLTTKGTLGIFQLESSGM 628
            FLGL+ LT++  +++ + + RG ++ L  +  DD    + Y LL+   TLG+FQL+S GM
Sbjct: 588  FLGLRNLTVIGDAIENIKRNRGEEIHLEQLHADDPKVSKVYDLLSRGDTLGVFQLDSGGM 647

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE-- 684
            ++ L+ M+P   +DI+A ++LYRPGP  ++    Y +RKNG+++I  IHP ++  LKE  
Sbjct: 648  QELLKRMKPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEIL 707

Query: 685  --TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
              T G+I+YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + +Q ++F  G  +NG S
Sbjct: 708  DETYGLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMQENGYS 767

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
            K+    ++  +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K 
Sbjct: 768  KSAMDALWGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKS 827

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-P 861
              +  D R   I+++PPSVN    DF+     I + + AI+ VG+     I+++  DK  
Sbjct: 828  AIYLSDCRHLGIKVLPPSVNESEEDFQAVGEDIRFGMGAIRNVGSEVVESIIKSRHDKGA 887

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEK 917
            F S  D+  +++     +RV E+L+ AGA D   + R  L+     ++D +Q   +  +K
Sbjct: 888  FTSFSDYLDKIELAACTKRVTEALIKAGAFDDLNHPRKGLMLIHEDAVDAVQTTKKAADK 947

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE--NEQRVLGFYFSGHPLDVYKPIL 975
             + +    I   E    S+   L+    +N   + E   E+ +LG Y SGHPLD ++  L
Sbjct: 948  GQFDLFAGIGGGEDDAASNAFALD-IPEDNWDRKHELALEREMLGLYVSGHPLDGFEEAL 1006


>gi|311741557|ref|ZP_07715381.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium
            pseudogenitalium ATCC 33035]
 gi|311303727|gb|EFQ79806.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium
            pseudogenitalium ATCC 33035]
          Length = 1194

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 323/1020 (31%), Positives = 539/1020 (52%), Gaps = 63/1020 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+ SFVHL  H+ +S+L+G   ++ + D++   + PA+ +TD  N++ +  F ++   
Sbjct: 5    MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVRQEMPAVGMTDHGNMYGSDAFYRRMTG 64

Query: 65   AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113
            AG++PIIG +  +  + + N K    G TP      +          ++   A G + L 
Sbjct: 65   AGVKPIIGIEAYMAPESRFNKKRVLWG-TPDQKRDDVSASGAYLHQTMIAENATGLRNLF 123

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L S      Q  +  R+    + E   +G+I  TG  SG +           A +    
Sbjct: 124  TLSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFNEALEAAAM 182

Query: 174  FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            ++ ++G D  ++ L  H G D   R R+  ++++    +LP + TN+  ++ E    AH+
Sbjct: 183  WQDIYGKDNFFLELMDH-GLDIEKRTRDG-LLEIGRKLDLPPLVTNDCHYVLESQAPAHE 240

Query: 230  VLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQV 287
             ++ V         DR +     +Y+K+ ++M   + D+ P+  +NT+ IA R    +Q 
Sbjct: 241  AMLCVQTGKTFMDPDRFKFGGTGYYIKSAAQMRETWDDMIPDGCDNTLWIAER----VQD 296

Query: 288  HAPILPRFIEKECDDIQKEEENE----LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            +  I               E +     L ++ + GL+ R     +      ++Y +R  +
Sbjct: 297  YGEIWEEHTHDRMPIADVPEGHTPTSWLTHEVMEGLQKRFPGQDVP-----EEYIERAKY 351

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            E++VI    +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDPL   LL
Sbjct: 352  EISVIEMKGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGALVAYALTITNIDPLEHDLL 411

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R S PD DIDF   RR E+I Y   ++G ++VAQ+ITFG+++ K A++D  +
Sbjct: 412  FERFLNPERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAK 471

Query: 464  AL--QMPYSQVDRL-CKLIPNDPAHPVSLQAIADDSRFREARLA--------DPSVDRLL 512
                Q  +   DR+   L P   A  + L+ I D    R +  A        DP V ++ 
Sbjct: 472  VHFGQPGFQMADRINGALPPAIMAKDIPLKGITDPDHERYSEAAEVRQMVESDPDVKKIY 531

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            + ++ LEG+ R A  HA  +++    L   +PM++       +T ++    E  GL+K D
Sbjct: 532  DTARGLEGVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMD 591

Query: 573  FLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD---HETYHLLTTKGTLGIFQLESSGM 628
            FLGL+ LT++  +++ + + RG ++ L  +  DD    + Y LL+   TLG+FQL+S GM
Sbjct: 592  FLGLRNLTVIGDAIENIKRNRGEEIHLEQLHADDPKVSKVYDLLSRGDTLGVFQLDSGGM 651

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE-- 684
            ++ L+ M+P   +DI+A ++LYRPGP  ++    Y +RKNG+++I  IHP ++  LKE  
Sbjct: 652  QELLKRMKPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEIL 711

Query: 685  --TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
              T G+I+YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + +Q ++F  G  +NG S
Sbjct: 712  DETYGLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMQENGYS 771

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
            K+    ++  +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K 
Sbjct: 772  KSAMDALWGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKS 831

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-P 861
              +  D R   I+++PPSVN    DF+     I + + AI+ VG+     I+++  DK  
Sbjct: 832  AIYLSDCRHLGIKVLPPSVNESEEDFQAVGEDIRFGMGAIRNVGSEVVESIIKSRHDKGA 891

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEK 917
            F S  D+  +++     +RV E+L+ AGA D   + R  L+     ++D +Q   +  +K
Sbjct: 892  FTSFSDYLDKIELAACTKRVTEALIKAGAFDDLNHPRKGLMLIHEDAVDAVQTTKKAADK 951

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE--NEQRVLGFYFSGHPLDVYKPIL 975
             + +    I   E    S+   L+    +N   + E   E+ +LG Y SGHPLD ++  L
Sbjct: 952  GQFDLFAGIGGGEDDAASNAFALD-IPEDNWDRKHELALEREMLGLYVSGHPLDGFEEAL 1010


>gi|110005217|emb|CAK99543.1| probable dna polymerase III alpha chain transmembrane protein
           [Spiroplasma citri]
          Length = 1014

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 332/997 (33%), Positives = 512/997 (51%), Gaps = 84/997 (8%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           HL V +SYSLL   ++ +            ++AI D NN+F   EF Q      I+PIIG
Sbjct: 5   HLNVRTSYSLLSSLITFDKYFTYAMTTGLLSLAICD-NNMFGVYEFHQLCQKNKIKPIIG 63

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             + I   D          P+    ++ L     +GY  L+E+ S + +  + K++V   
Sbjct: 64  LNVIIWFND---------IPY----NMNLFARNQKGYFNLVEISSLVMINTENKKNVT-- 108

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              L EI       LT      I+    + +     +   T K L      + L  + G 
Sbjct: 109 ---LDEISK----FLTTDVKIIIN----YTTDDYQPELYQTLKSLLKVETDLYLGINNGN 157

Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR----V 248
               ES    LA      ++  N   + + ED+ A+ V+  +   T+  +         V
Sbjct: 158 LSLLESLQTLLASEQ---IIWNNKVQYFTSEDFIAYKVVDTIKTQTLFKESKMKDLYGWV 214

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF--ILQVHAP---ILPRFIEKECDDI 303
           +P  Y +   + +  F        N   + +   F  +L+   P      +F+++ C   
Sbjct: 215 SPPSYYQQYFDNIKTFI----TGINVFPLHKGTIFDNLLRYPTPEGQTAQQFLQEIC--- 267

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               +  L+ K ++                   Y +RL++EL VI +M F+ YFLIV D+
Sbjct: 268 ----QTALKQKRISS--------------SKTTYLERLNYELTVINKMGFNDYFLIVWDY 309

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           +++AK+ NI VGPGRGS AGS+ +Y L IT IDP+ ++LLFERFLNP+R S+PD DIDF 
Sbjct: 310 VRYAKQQNIFVGPGRGSAAGSLVSYLLDITTIDPITYNLLFERFLNPERKSLPDIDIDFE 369

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            D+R+ V+ Y+  KYG E VA IITF ++  K A+RD+ R   +   + D++ K +P + 
Sbjct: 370 DDKREMVVEYLFEKYGSEHVAHIITFQTIGMKMAIRDICRIFDIAIEEADKMSKAVPLEY 429

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +    +AI  +  F   +   P V   L   +K+ GL R   THAAG+V+  + L  ++
Sbjct: 430 NYHYE-EAINSNPLFEIYQKKYPQVFLHL---KKIIGLPRQTGTHAAGVVLTQQRLQTII 485

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
           P+ ++  + +  TQ++M ++E+ G++K D LGL+ LT+L   +D + Q   VK+D++ +P
Sbjct: 486 PV-KEGYNGIYQTQYSMNYLEELGILKMDLLGLRNLTILHDVIDNIYQETKVKLDVNTLP 544

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +D +TY LL    T GIFQLES GM + L  M PD +EDI+A  SLYRPGP DNI ++ 
Sbjct: 545 LNDRKTYQLLAQGDTKGIFQLESPGMTKVLVDMAPDQLEDIVATSSLYRPGPQDNIPLFI 604

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            RK    K+  I   +  +L  T G+I+YQEQVM IAQ ++ +SL++ADVLRRAMGKK  
Sbjct: 605 KRKKKLAKVTYIDERLAEILAPTYGIIVYQEQVMLIAQKVANFSLAKADVLRRAMGKKDA 664

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             M + K  FI  A KN   + IA  I+EL+ KFA YGFN+SHA AY+++ YQ A++K +
Sbjct: 665 SIMSQMKTEFIEEAVKNHYVEKIAQEIWELIYKFAAYGFNRSHAVAYSLLGYQMAYLKAN 724

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
           Y  +FLA+ +T  + +  K   +   A++ ++ I+PP++N P   +   DN+I   L  I
Sbjct: 725 YSSQFLASLLTHVIGDEHKTNDYIALAKKNHLTIVPPNINAPYRQYHTIDNQICVPLLII 784

Query: 843 KGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           K +G      I  E   +     L D   R+  K LNR+  E+L F+GALD F  +R+ L
Sbjct: 785 KQIGFAFFNKIAQEYQTNGMLTDLYDLFIRLYKKGLNRKTYEALCFSGALDVFKMNRITL 844

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             +   I  Y + ++    N  EN+          ++ +E     +  +  E E   LGF
Sbjct: 845 FNNYQRILTYIELIKTQEEN--ENLVVDFSLAEKPELVIEP---NDEVICLEKEYEFLGF 899

Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
           Y S HPL   K I  K    GY++    I  +N+RL+
Sbjct: 900 YLSNHPL---KYIREK---AGYQDKTTLI--SNLRLS 928


>gi|306836456|ref|ZP_07469431.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium
            accolens ATCC 49726]
 gi|304567675|gb|EFM43265.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium
            accolens ATCC 49726]
          Length = 1190

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 326/1023 (31%), Positives = 539/1023 (52%), Gaps = 69/1023 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+ SFVHL  H+ +S+L+G   ++ + D++     PA+ +TD  N++ +  F ++  +
Sbjct: 1    MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVKQNMPAVGMTDHGNMYGSDAFYKRMTS 60

Query: 65   AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113
            AG++PIIG +  +  + + N K    G TP      +          ++   A G + L 
Sbjct: 61   AGVKPIIGIEAYMAPESRFNKKRVLWG-TPDQKRDDVSASGAYLHQTMIAENATGLRNLF 119

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L S      Q  +  R+    + E   +G+I  TG  SG +           A +    
Sbjct: 120  TLSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFNEALEAAAM 178

Query: 174  FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            ++ ++G D  ++ L  H G D   R R+  ++++    +LP + TN+  ++ E    AH+
Sbjct: 179  WQDIYGKDNFFLELMDH-GLDIEKRTRDG-LLEIGRKLDLPPLVTNDCHYVLESQAPAHE 236

Query: 230  VLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQV 287
             ++ V         DR +     +Y+K+ ++M   + DL P+  +NT+ IA R     +V
Sbjct: 237  AMLCVQTGKTFMDPDRFKFGGTGYYIKSAAQMRDTWDDLIPDGCDNTLWIAERVQDYSEV 296

Query: 288  HAPILPRFIEKECDDIQKEEENE-------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
                   + E   D +   +  E       L ++ + GL+ R     +      ++Y +R
Sbjct: 297  -------WEEHTHDRMPIADVPEGHTPTSWLTHEVMEGLQRRFPGRDVP-----EEYIER 344

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
              +E++VI    +  YFLIVA+ I++A+   I VGPGRGS AG++ AYALTIT+IDPL  
Sbjct: 345  AKYEISVIEMKGYPSYFLIVAELIKYARSVGIRVGPGRGSAAGALVAYALTITNIDPLEH 404

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNP+R S PD DIDF   RR E+I Y   ++G ++VAQ+ITFG+++ K A++D
Sbjct: 405  DLLFERFLNPERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKD 464

Query: 461  VGRAL--QMPYSQVDRL-CKLIPNDPAHPVSLQAIADDSRFREARLA--------DPSVD 509
              +    Q  +   DR+   L P   A  + L+ I D    R +  A        DP V 
Sbjct: 465  SAKVHFGQPGFQMADRINGALPPAIMAKDIPLRGITDPDHERYSEAAEVRQMVETDPDVK 524

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            ++ + ++ LEG+ R A  HA  +++    L   +PM++       +T ++    E  GL+
Sbjct: 525  KIYDTARGLEGVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLL 584

Query: 570  KFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD---HETYHLLTTKGTLGIFQLES 625
            K DFLGL+ LT++  +++ + + RG +V L  +  DD    + Y LL+   TLG+FQL+S
Sbjct: 585  KMDFLGLRNLTVIGDAIENIKRNRGEEVQLEQLHADDPKVSKVYDLLSRGDTLGVFQLDS 644

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             GM++ L+ M+P   +DI+A ++LYRPGP  ++    Y +RKNG+++I  IHP ++  LK
Sbjct: 645  GGMQELLKRMKPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLK 704

Query: 684  ----ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
                ET G+I+YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + +Q ++F SG  +N
Sbjct: 705  EILDETYGLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWSGMQEN 764

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G SK+    ++  +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  
Sbjct: 765  GYSKSAMDALWGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKK 824

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SA 858
            +K   +  D R   I ++PPSVN    DF+     I + + AI+ VG+     I+ +  A
Sbjct: 825  DKSAIYLSDCRHLGINVLPPSVNESEEDFQAVGEDIRFGMGAIRNVGSEVVESIIASRKA 884

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
               F S  D+  ++D    ++RV E+L+ AGA D F   R  L+   ++     Q  +K 
Sbjct: 885  KGAFTSFSDYLDKIDLAACSKRVTEALIKAGAFDDFQQPRKGLMLIHEDAVDAVQTTKKA 944

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYK 972
                  ++FA   G   D  +   F+++     ++       E+ +LG Y SGHPLD ++
Sbjct: 945  ADKGQFDLFAGFGGG-DDASSEGAFAIDVPDDSWDRKHELALEREMLGLYVSGHPLDGFE 1003

Query: 973  PIL 975
              L
Sbjct: 1004 EAL 1006


>gi|268317469|ref|YP_003291188.1| DNA polymerase III, alpha subunit [Rhodothermus marinus DSM 4252]
 gi|262335003|gb|ACY48800.1| DNA polymerase III, alpha subunit [Rhodothermus marinus DSM 4252]
          Length = 1607

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 291/728 (39%), Positives = 416/728 (57%), Gaps = 43/728 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL  H+ YSLL+GA  +  +L++ A  +  A+AITD  NLF   EF + A   GIQPI
Sbjct: 4   FSHLHCHTQYSLLDGAARIQTLLERAAEYEIEAVAITDHGNLFGVPEFYRTAEKIGIQPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IGC+        L  T++      T    VLL     GY+ LI+L S  YL +      R
Sbjct: 64  IGCEF------YLTPTSRHDRNERTRYHQVLLAKNETGYRNLIKLSSLSYL-EGYYYKPR 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I    L +   EGLI  T    G I +       + A K    + +LFG+  Y+ +Q H 
Sbjct: 117 IDHELLTQY-HEGLIATTCCLQGEIPQTILHKGEEAARKLFEWYLELFGEDYYIEIQDH- 174

Query: 191 GYDRYRESQVVQLAYTHE--LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
           G    ++   + L +  E  + ++ATN+  ++   D+E HDVL+ +     +S   R R 
Sbjct: 175 GLPEQKKINAILLRWAREYGVRVIATNDVHYVDRTDFEPHDVLLCLQTGKDMSDPSRLRF 234

Query: 249 TPDH-YLKNRSEM-VSIFSDLP-----EALENTVEIARRCSF------ILQVHAPILPRF 295
             D  YLK+ +EM  ++ SD+      E + NT E+A +C F      +L  H PI P +
Sbjct: 235 DNDQFYLKSPAEMRQALLSDIEPRLVDEMMANTGEVADKCRFQLPTGKLLMPHYPIPPEY 294

Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                     + +  LR+    G   R             +  +RL+ EL +I +M F+G
Sbjct: 295 --------NGDMDAYLRDLVFEGARRRYGDPL------PHEVAERLEHELAIIKKMGFAG 340

Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
           YFLIV DF   A++  + VGPGRGS AGS  AY L IT+IDPL++ LLFERFLNP+R+SM
Sbjct: 341 YFLIVQDFTTAARRLGVRVGPGRGSAAGSAVAYCLGITNIDPLKYDLLFERFLNPERVSM 400

Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
           PD DIDF    R +VI YV  KYG E V QIITFG++ AK A+RDV R L +P ++ DR+
Sbjct: 401 PDIDIDFDDRGRGKVIDYVVQKYGRENVCQIITFGTMGAKMAIRDVARVLGIPLAEADRI 460

Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            KLIP+ P   ++ QA  +    R  + + DP + +LL  ++ LEG  RH   HAAG++I
Sbjct: 461 AKLIPDGPKVTLA-QAYEEVPELRALKESNDPQIRKLLHYAEVLEGSVRHTGVHAAGVII 519

Query: 535 GDRPLSQLVP--MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
               +S  VP  + +   +D   TQ++ KWIE+ GL+K DFLGLKTLT+L  +L  + + 
Sbjct: 520 APGRVSDYVPVAVAKGKDNDTVTTQYDGKWIEEFGLLKMDFLGLKTLTILNDALQLIKEN 579

Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            G+++DL  IP DD +T+ L     T+ IFQ ES GMR+ L  ++P  I+D+IA+ +LYR
Sbjct: 580 HGIEIDLDQIPLDDPKTFELFQRGETVAIFQFESEGMREWLRKLKPTSIDDLIAMNALYR 639

Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           PGP+D I  Y  RK+G E +   HPL++P+LK T G+ IYQEQVMQ+AQ+++GY+L +AD
Sbjct: 640 PGPMDLIPNYIARKHGLEPVEYPHPLLEPVLKNTYGIPIYQEQVMQMAQVMAGYTLGQAD 699

Query: 712 VLRRAMGK 719
           +LRR + +
Sbjct: 700 LLRRCVAE 707



 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 164/264 (62%), Gaps = 4/264 (1%)

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            V+  +MGKK  EEM K +E F++GA++ G+    A  +F+++ KFA YGFNKSH+AAY++
Sbjct: 1123 VVHNSMGKKKVEEMKKHREIFVAGAAERGVDAETANAVFDMMEKFAGYGFNKSHSAAYSI 1182

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K +YP EF+AA+MT EM + +K+     +AR+  ++++PPS+N     F V 
Sbjct: 1183 VAYQTAYLKANYPAEFMAAAMTSEMGDTKKLAVVLDEARRMGLELLPPSINRSQAHFTVE 1242

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            D RI + L AIKGVG      I++A     PF ++ D    +D + +N++VLESL  AGA
Sbjct: 1243 DGRIRFGLGAIKGVGLGAIEAILKAREKHGPFRTIFDLIRHLDLRVVNKKVLESLARAGA 1302

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENS 948
            LD     R QL++++D   +YAQ V+ +R     ++F  E GT +      L      + 
Sbjct: 1303 LDELEGHRAQLVEAIDLAVQYAQKVQADRMAGQASLFG-ESGTRTALPPPNLPVVQPWSR 1361

Query: 949  SVRFENEQRVLGFYFSGHPLDVYK 972
            +   + E+ ++GFY +GHPL+ Y+
Sbjct: 1362 ARCLKEERELIGFYVTGHPLEAYR 1385


>gi|296112095|ref|YP_003622477.1| DNA-directed DNA polymerase III, alpha chain [Leuconostoc kimchii
            IMSNU 11154]
 gi|295833627|gb|ADG41508.1| DNA-directed DNA polymerase III, alpha chain [Leuconostoc kimchii
            IMSNU 11154]
          Length = 1113

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 327/1038 (31%), Positives = 548/1038 (52%), Gaps = 67/1038 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQ+ S+YSLL+   ++  I+         A+A+TD N ++ A++F Q A   GI+P+
Sbjct: 2    YAPLQILSAYSLLKNPNTIEQIIQVAKERHYEAVALTDINVMYGAVDFYQTARKYGIKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L I+      + N   T FP    ++L+     GYQ L+ + S          ++ 
Sbjct: 62   FGLTLLIN-----GLVNTATT-FP----VLLIAENQAGYQNLMWISSAKMTSKSSDMTLT 111

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L  I     ++L+  S      A  ++ +    + L T  K+  + +Y+ +  + 
Sbjct: 112  IIADHLDGIN----VILSQDSELAQFIAAEYDDATDYWQDLTT--KIKPENVYLGI--NP 163

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVT 249
                  +S++V  +  ++  L+A ++  +L+ +D     VL A+ A++ +   K   +  
Sbjct: 164  SLAPQIQSRLVNFSLANQARLIALDDIDYLNPDDAFTTQVLKAIDANAQLDGVKVLSQQL 223

Query: 250  PDHYLKNRSEMVSIF---SDLPEALENTVEIARRCSF-ILQVHAPILPRFIEKECDDIQK 305
              H L++ +++ + +     L  A ++  ++  +    I+      LP F   E  + ++
Sbjct: 224  GTHTLEDLNQVKAAYLTTDALKMAYQHNEQLVSKSHVDIMFKQTASLPSF---ELPNSEQ 280

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 L+  +  GL  RL    + + +    Y +RL  EL VI  + F+ YFLIV D + 
Sbjct: 281  TSGEYLQFISEKGLSNRLKGRKLPEDH----YSKRLKHELQVINHLGFNDYFLIVWDIVN 336

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A + NI +G GRGS AGS+ AYAL ITD+DPL+F LLFERFLNPDR+ MPD DID+  +
Sbjct: 337  FAHQKNIQMGAGRGSAAGSLVAYALGITDVDPLQFGLLFERFLNPDRVQMPDIDIDWPDN 396

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DPA 484
            +R+ ++ Y+ +KYG    AQIITFG+L AK ALRD  R   +  + + R+ + IP     
Sbjct: 397  KREAILTYLHDKYGQRNFAQIITFGTLAAKQALRDTARVFGVSQAMMSRISRAIPQPKQG 456

Query: 485  HPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              VS+Q A+      +       + D LL+++Q++EGL R+ STHAAG+V+    L + +
Sbjct: 457  RKVSIQDALESSDNLKNTLSTIENGDLLLKVAQQIEGLPRNYSTHAAGVVLSADVLVKTL 516

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--VDLSLI 601
            P+ +    D  +TQF    +E  GL+K D LGL  L++L ++L ++A+  +    ++S +
Sbjct: 517  PV-QSGTDDRLLTQFEKNPVEALGLLKIDVLGLSNLSILAQTL-YVAKANLPEYFNISDV 574

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD +T  L     T GIFQ ES G++  L  ++P   E I+A+ +LYRPGP  NI  +
Sbjct: 575  PLDDEKTLDLYAAGDTDGIFQFESPGIKNVLRQLKPATFEHIVAVNALYRPGPSRNIETF 634

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R++G E +  +   +  +L  T G+I+YQEQVM +A+  +G++L EAD+LR AM KK 
Sbjct: 635  IKRRHGLENVTMLDASLKTILAPTFGIIVYQEQVMLVAEAYAGFTLGEADILRSAMSKKK 694

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E+M    ++F++GA   G     A  IF  + +FA+YGFN+SHA AY+ +S++ A+MK 
Sbjct: 695  LEKMTAMHKQFVTGAVSLGHDAKQAEQIFAYIDEFANYGFNRSHAVAYSKLSFELAYMKA 754

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLA 840
            HYPV F  A +   + + +K++++   A+   I + PPS+N     F   DN+ +   L 
Sbjct: 755  HYPVAFFTAVLNANLGSPDKVRRYVTAAKSRGITVKPPSINR-SQRFWTSDNQTLQMGLN 813

Query: 841  AIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             I+GV T     ++E   +   F S + F  R+  K     +L  LV+AGALD FGY+R 
Sbjct: 814  NIRGVRTDFVTTLLEERQNNGEFQSFQSFVRRLPDKFRKHDILIQLVYAGALDAFGYNRA 873

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI----TLEKFSVENSSVRFENE 955
            +L+ +LD++                     E  +F D I     ++K +  +S+ +  +E
Sbjct: 874  ELISALDDLI--------------------EAASFGDLILNETKIKKVAEFSSTEKLAHE 913

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSR 1014
            + V+G   SGHPLD Y   L  +  + +++ V   + N  I + A+V + ++ +T+KG  
Sbjct: 914  KDVIGVNLSGHPLDSY---LEMITTQHFQQIVDFTQKNQMITVIALVDNIRKTRTKKGEE 970

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + ++T S+         F
Sbjct: 971  MAFITVSDMTGSISVTIF 988


>gi|317121639|ref|YP_004101642.1| DNA polymerase III subunit alpha [Thermaerobacter marianensis DSM
           12885]
 gi|315591619|gb|ADU50915.1| DNA polymerase III, alpha subunit [Thermaerobacter marianensis DSM
           12885]
          Length = 1264

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 302/890 (33%), Positives = 482/890 (54%), Gaps = 47/890 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL  HS+YS L+GA  +  ++++ A    PA+A+TD +N+  A+EF + A AAGI+PI
Sbjct: 2   FVHLHCHSAYSFLDGASPVQALVERAAGLGMPALALTDHDNVAGAVEFDRAARAAGIKPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFP-TVPS--------IVLLVSTAEGYQRLIELVSRMYL 121
            G +L + + +    +  G +  P T P         +VLL +   GY RL  L++R +L
Sbjct: 62  QGVELTLLLDEPAGSSGGGTSERPLTAPRGGELATAHLVLLATGPAGYARLCRLLTRAHL 121

Query: 122 LDQGKQSVRICLSW---LQEI--GTE-----GLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            +Q +   R  L W   L+E+  G E     GLI L+G   GP+ +A        A +R 
Sbjct: 122 -EQPRG--RPALPWSVLLEEVAPGGEPLPGHGLIALSGCRRGPVLQALLQGDRATALERA 178

Query: 172 LTFKKLFGDRLYVNLQRHRGY---DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              +  FG R +  L+   G+   +R     +  LA    + +VATN+  + + + +  H
Sbjct: 179 RRLRDTFG-REHFFLELQGGWLPGNRALNRTLADLAEHLGVGVVATNDVHYATRDRFAVH 237

Query: 229 DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
           D+L  V     V +    R +  ++ LK+   M  +F+  P+AL+ T+ IA RC  +L  
Sbjct: 238 DLLACVRLGIPVDEPHPQRHLNAENDLKSPRAMAQMFAGYPQALKATLAIAERCQPVLPA 297

Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELN 346
            A  +PR        I+ E          A L  ++ +GA+ + G      RQRL+ EL 
Sbjct: 298 GA--VPRPAFPLPPGIRAE----------AYLREQVERGALWRYGRITPRIRQRLEHELR 345

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
           +I +++ + YFL+V D  ++A++  I    GRGS A S  AY L ITD+D +   LLFER
Sbjct: 346 IIEKLQLADYFLLVWDVARYARQQGIRCA-GRGSAADSAVAYCLGITDVDAIERGLLFER 404

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           FL+ +R   PD DIDF    RD+V  YV+ +YG E VA + T+ +  A+ ALRD G+AL 
Sbjct: 405 FLSLERAEQPDIDIDFDARYRDQVADYVEQRYGPEHVATVCTYQTYHARGALRDFGKALG 464

Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
            P + +DR+ K +P   +  +  +A+ +    R+  L      RL+++ +   GL RH  
Sbjct: 465 FPTAVIDRIAKRVPYALSRHLG-RALEEVPELRDLDLPRERFRRLVDLCEAAAGLPRHMG 523

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
           TH  G+VI  RPL +L P+ R  +    + QF+ + +E+ GL+K D L L+TL  +++++
Sbjct: 524 THLGGLVISRRPLVELSPLQRSAKGRR-ILQFDKRGVEELGLVKLDLLPLRTLGAVEEAV 582

Query: 587 DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             + +R    D   IP DD  TY LL T  T+G FQLES   R     ++P+ +ED++A 
Sbjct: 583 RVIRRRDPAFDYDRIPLDDRATYELLRTGETVGAFQLESPAQRALQPRLKPENLEDVVAS 642

Query: 647 VSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
           V++ RPGPI  D +  +  R+ G+E +  +HP ++P+L++T GV+++QEQV++IA  ++G
Sbjct: 643 VAIIRPGPIKGDMVEPFLARRRGREPVTYLHPKLEPILRKTWGVVLFQEQVIEIATAIAG 702

Query: 705 YSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
           ++  EAD LRR M   +  E+M+     F+  A + G+ + +A  IF ++  +A YGF +
Sbjct: 703 FTPGEADRLRRVMTHARSPEDMEDIGRHFLRRAREQGVDEAVAQAIFRMIQGYASYGFCE 762

Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
           +HAAA+ V +Y+TA++  HYP E+ AA ++L+          C +A +  I+I+P  +N 
Sbjct: 763 AHAAAFGVTAYKTAYLLAHYPAEWYAALLSLQPMGYYPPNTLCVEAARRGIRILPLDINA 822

Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRV 872
             V F      I   L A+KG+G   A  I+ E     PF    DF  R+
Sbjct: 823 SQVGFAATPGAIRIGLRAVKGLGEEPAAAIVAERERGGPFRHFMDFLLRM 872


>gi|282852082|ref|ZP_06261440.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 224-1]
 gi|282556842|gb|EFB62446.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 224-1]
          Length = 899

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 293/836 (35%), Positives = 455/836 (54%), Gaps = 34/836 (4%)

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSEMV 261
            LA   EL L A  +  +L+  +      L A+  +T +   ++  +    HYLK   E+ 
Sbjct: 47   LATQFELSLAAVEDGQYLNRNEQFLRRTLQAIKSNTHLENVEQLAKQAGSHYLKTSEELQ 106

Query: 262  SIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
              +   ++ +ALEN  +I + C+  +    P LP+F + +        +  L + A  GL
Sbjct: 107  VNYRKFEIEDALENAEKIGQLCNAKITFQDPQLPKFKQNKF----PTSKEYLHSLAQNGL 162

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
              R       KG   + Y++RLD+EL VI  M F  YFLIV D + +A   +I  GPGRG
Sbjct: 163  AKRF------KGQIPERYQKRLDYELKVINEMGFDDYFLIVWDVMNFAHSVHITTGPGRG 216

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            S AGS+ +YAL IT++DPL ++LLFERFLNP R  MPD D+D   +RRDEVI+Y+  KYG
Sbjct: 217  SAAGSLVSYALRITEVDPLEYNLLFERFLNPARQQMPDIDLDIPDNRRDEVIKYMFEKYG 276

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
                AQI+TFG+L AK  L+DV R   +   +  R    IP+        +A       +
Sbjct: 277  MNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHAKGKITLAEAYQKSKELQ 336

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
                 +     L   ++ LE L RH S HAAG+VI D  L+++V +       +PVTQ  
Sbjct: 337  LLVNTNTFSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVGLQAGPLG-IPVTQQT 395

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               +E  GL+K DFLGL+ LT+L   +  L   GV++D + IP +D ET  L     T  
Sbjct: 396  KLNVESLGLLKIDFLGLRNLTILGNIIAALKSEGVEIDPNQIPLNDQETLALFQRGDTDA 455

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            +FQ ES G+++ LE + PD  EDI+A+ +LYRPGP++NI  + NRK+GKE++    P + 
Sbjct: 456  VFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPMNNIGHFINRKHGKERVQYPDPSLK 515

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
             +L  T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK  + + K++E+FI GA K 
Sbjct: 516  KILGPTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNADVIQKEREKFIQGAVKL 575

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G  K +A  +++ +A+FA+YGFN+SHA AY+ I++  A+ K HYP  F  + +   + N 
Sbjct: 576  GRRKEVAEQVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYPGAFYLSLLNSNIGNR 635

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
             KI ++   A++  I+ +PP +     DF + + +I   L AI+G+ +   + I+E    
Sbjct: 636  NKIAQYLMQAQEAGIKTLPPDIENSQADFSLENGKILVGLKAIRGLRSDLLKQILEIK-- 693

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
            +P  S+ DF  ++D+  L+   + +L+ AGA D    +R +LL+   ++ +  +    N 
Sbjct: 694  RPIKSMTDFLWKIDNNLLSADAIANLIKAGAFDRLAPNRNELLKINKDLVESVKMAGSNL 753

Query: 920  TNKHENIFAHEKGTFSDKITLEKF--SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
            +     +F     T   KI  EK   + E S++  E     +GF    +P+   +   RK
Sbjct: 754  S-----LFE----TLEPKIEEEKMPTAAEKSAMEVE----AMGFSTGINPIIAVQKYARK 800

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               K  +   +  +G  I +  ++  K Q  T+KG  + +  FS+ + + +   FP
Sbjct: 801  YNAKRLQAFESNEQG--IAVGKLMRIK-QITTKKGDNMAFAVFSDSSGDKDFTIFP 853


>gi|296117566|ref|ZP_06836150.1| DNA polymerase III, alpha subunit [Corynebacterium ammoniagenes DSM
            20306]
 gi|295969297|gb|EFG82538.1| DNA polymerase III, alpha subunit [Corynebacterium ammoniagenes DSM
            20306]
          Length = 1192

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 321/1022 (31%), Positives = 535/1022 (52%), Gaps = 68/1022 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+ SFVHL  H+ +S+L+G   ++ + ++++  + PA+ +TD  N+F +  F ++   
Sbjct: 4    MAKNSSFVHLHNHTEFSMLDGMAKVDLLAEEVSRQEMPAVGMTDHGNMFGSDAFYRRMTK 63

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSI---------VLLVSTAEGYQRLIE 114
            AG++PIIG +  +          Q   TP      +          +L   A G   L +
Sbjct: 64   AGVKPIIGIEAYMAPGSRFNKKRQLWGTPDQKRDDVSASGAYLHQTMLAENATGLSNLFK 123

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   +G+I  TG  SG +           A +    +
Sbjct: 124  LSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFDEALEAAAMW 182

Query: 175  KKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            + ++G D  ++ L  H G D   R R+  ++++    +LP + TN+  ++ E    +H+ 
Sbjct: 183  QDIYGRDNYFLELMDH-GLDIEKRTRDG-LLEIGRKLDLPPLVTNDCHYVLESQAPSHEA 240

Query: 231  LMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVH 288
            ++ V     +   DR +     +Y+K   +M  ++  + P+  +NT+ IA R      + 
Sbjct: 241  MLCVQTGKTLMDPDRFKFDGTGYYIKTAEQMRELWDHMVPDGCDNTLWIAERVESYDSL- 299

Query: 289  APILPRFIEKECDDIQKEEENE-------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
                  + E   D +   +  E       L ++ + GL+ R     +      ++Y +R 
Sbjct: 300  ------WEEHSHDRMPVADVPEGHTPTTWLTHEVMEGLKDRFDGKEVP-----EEYIKRA 348

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            ++E++VI    +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   
Sbjct: 349  EYEISVIDMKGYPSYFLIVAEIIKHARSIGIWVGPGRGSAAGALVAYALTITNIDPIEHD 408

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R S PD DIDF   RR E+I+Y   ++G +++AQ+ITFG+++ K A++D 
Sbjct: 409  LLFERFLNPERPSAPDIDIDFDDRRRGEMIQYAAERWGEDKIAQVITFGTVKTKQAIKDA 468

Query: 462  GRAL--QMPYSQVDRL-CKLIPNDPAHPVSLQAIADDSRFREARLA--------DPSVDR 510
             +    Q  +   DR+   L P   A  + L  I D    R +  A        DP V +
Sbjct: 469  AKVHFGQPGFQMADRINGALPPAVMAKDIPLAGITDPEHERYSEAAEVRQMVETDPDVKK 528

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            + + ++ LEG+ R A  HA  +++    L   +PM++       +T ++    E  GL+K
Sbjct: 529  IYDTARGLEGVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLK 588

Query: 571  FDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDD---HETYHLLTTKGTLGIFQLESS 626
             DFLGL+ LT++  +L +    RG+ ++L  +  DD    + Y LL++  TLG+FQL+S 
Sbjct: 589  MDFLGLRNLTVIGDALANIKKNRGIDLNLEDLHADDPQVSKVYDLLSSGDTLGVFQLDSG 648

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHP-LIDPM-- 681
            GM++ L+ M+P   +DI+A ++LYRPGP+     +N  +RKNG+++I  IHP L +P+  
Sbjct: 649  GMQELLKRMKPTGFKDIVASLALYRPGPMGVNAHWNYADRKNGRQEITPIHPELEEPLSE 708

Query: 682  -LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
             L ET G+I+YQEQ+M+I+Q L+ Y+  EAD  R+AMGKK  E + ++ E+F  G   NG
Sbjct: 709  ILGETYGLIVYQEQIMRISQKLANYTAGEADGFRKAMGKKKPEVLAQEYEKFSQGMFTNG 768

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             SK     ++  +  FA Y FNKSHAA Y ++S+ TA++K ++  E++AA +T   D  +
Sbjct: 769  YSKGAVDALWGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYFAPEYMAALLTSVADKKD 828

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
            K   +  D R   I+++PP VN    DF+   + I + + AI+ VG+     I+EA  DK
Sbjct: 829  KSAIYLADCRHLGIKVLPPDVNESAEDFEAVGDDIRFGMGAIRNVGSEVVESIIEARRDK 888

Query: 861  -PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
              F S  D+  ++      +RV ESL+ AGA D  G+ R  L+   ++     Q  +K  
Sbjct: 889  GAFKSFSDYLDKISLVACTKRVTESLIKAGAFDSLGHPRKGLMLIQEDAVDSVQSTKKAA 948

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKP 973
                 ++FA   G   D  ++  F+++     ++       E+ +LG Y SGHPLD ++ 
Sbjct: 949  DKGQFDLFASFGG--DDGESVSSFAIDIPEESWDRKHELALEREMLGLYVSGHPLDGFED 1006

Query: 974  IL 975
             L
Sbjct: 1007 AL 1008


>gi|227503307|ref|ZP_03933356.1| DNA polymerase III subunit alpha [Corynebacterium accolens ATCC
            49725]
 gi|227075810|gb|EEI13773.1| DNA polymerase III subunit alpha [Corynebacterium accolens ATCC
            49725]
          Length = 1190

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 325/1023 (31%), Positives = 538/1023 (52%), Gaps = 69/1023 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+ SFVHL  H+ +S+L+G   ++ + D++     PA+ +TD  N++ +  F ++  +
Sbjct: 1    MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVKQNMPAVGMTDHGNMYGSDAFYKRMTS 60

Query: 65   AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113
            AG++PIIG +  +  + + N K    G TP      +          ++   A G + L 
Sbjct: 61   AGVKPIIGIEAYMAPESRFNKKRVLWG-TPDQKRDDVSASGAYLHQTMIAENATGLRNLF 119

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L S      Q  +  R+    + E   +G+I  TG  SG +           A +    
Sbjct: 120  TLSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFNEALEAAAM 178

Query: 174  FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            ++ ++G D  ++ L  H G D   R R+  ++++    +LP + TN+  ++ E    AH+
Sbjct: 179  WQDIYGKDNFFLELMDH-GLDIEKRTRDG-LLEIGRKLDLPPLVTNDCHYVLESQAPAHE 236

Query: 230  VLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQV 287
             ++ V         DR +     +Y+K+ ++M   + DL P+  +NT+ IA R     +V
Sbjct: 237  AMLCVQTGKTFMDPDRFKFGGTGYYIKSAAQMRDTWDDLIPDGCDNTLWIAERVQDYSEV 296

Query: 288  HAPILPRFIEKECDDIQKEEENE-------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
                   + E   D +   +  E       L ++ + GL+ R     +      ++Y +R
Sbjct: 297  -------WEEHPHDRMPIADVPEGHTPTSWLTHEVMEGLQQRFPGRDVP-----EEYIER 344

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
              +E++VI    +  YFLIVA+ I++A+   I VGPGRGS AG++ AYALTIT+IDPL  
Sbjct: 345  AKYEISVIEMKGYPSYFLIVAELIKYARSVGIRVGPGRGSAAGALVAYALTITNIDPLEH 404

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNP+R S PD DIDF   RR E+I Y   ++G ++VAQ+ITFG+++ K A++D
Sbjct: 405  DLLFERFLNPERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKD 464

Query: 461  VGRAL--QMPYSQVDRL-CKLIPNDPAHPVSLQAIADDSRFREARLA--------DPSVD 509
              +    Q  +   DR+   L P   A  + L+ I D    R +  A        DP V 
Sbjct: 465  SAKVHFGQPGFQMADRINGALPPAIMAKDIPLRGITDPDHERYSEAAEVRQMVETDPDVK 524

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            ++ + ++ LEG+ R A  HA  +++    L   +PM++       +T ++    E  GL+
Sbjct: 525  KIYDTARGLEGVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLL 584

Query: 570  KFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD---HETYHLLTTKGTLGIFQLES 625
            K DFLGL+ LT++  +++ + + RG +V L  +  DD    + Y LL+   TLG+FQL+S
Sbjct: 585  KMDFLGLRNLTVIGDAIENIKRNRGEEVQLEQLHADDPKVSKVYDLLSRGDTLGVFQLDS 644

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             GM++ L+ M+P   +DI+A ++LYRPGP  ++    Y +RKNG+++I  IHP ++  LK
Sbjct: 645  GGMQELLKRMKPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLK 704

Query: 684  ----ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
                ET G+I+YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + +Q ++F  G  +N
Sbjct: 705  EILDETYGLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMQEN 764

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G SK+    ++  +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  
Sbjct: 765  GYSKSAMDALWGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKK 824

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SA 858
            +K   +  D R   I ++PPSVN    DF+     I + + AI+ VG+     I+ +  A
Sbjct: 825  DKSAIYLSDCRHLGINVLPPSVNESEEDFQAVGEDIRFGMGAIRNVGSEVVESIIASRKA 884

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
               F S  D+  ++D    ++RV E+L+ AGA D F   R  L+   ++     Q  +K 
Sbjct: 885  KGAFTSFSDYLDKIDLAACSKRVTEALIKAGAFDDFQQPRKGLMLIHEDAVDAVQTTKKA 944

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYK 972
                  ++FA   G   D  +   F+++     ++       E+ +LG Y SGHPLD ++
Sbjct: 945  ADKGQFDLFAGFGGG-DDASSEGAFAIDVPDDSWDRKHELALEREMLGLYVSGHPLDGFE 1003

Query: 973  PIL 975
              L
Sbjct: 1004 EAL 1006


>gi|308447379|ref|XP_003087417.1| hypothetical protein CRE_07974 [Caenorhabditis remanei]
 gi|308256652|gb|EFP00605.1| hypothetical protein CRE_07974 [Caenorhabditis remanei]
          Length = 699

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 296/717 (41%), Positives = 416/717 (58%), Gaps = 43/717 (5%)

Query: 99  IVLLVSTAEGYQRLIELVSRMYLLDQGKQ-SVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
           + +L  T EG   L  L S  Y   QG     R+    LQ  G +GLI  TG  SG I  
Sbjct: 1   MTMLSETTEGMHNLFRLSS--YASMQGYYFKPRMDRELLQTYG-KGLITTTGCPSGEIQT 57

Query: 158 AFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVAT 214
                    A +    F+ +FG +  +  L  H G D  R  +S ++++A   ++PLVAT
Sbjct: 58  RLRLGQYDEARQAAAEFQDIFGRENFFCELMDH-GLDIERRVQSDLIKIARDLKIPLVAT 116

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALEN 273
           N+  ++ E D EAH  L+ V   + +   +R +     +YLK  +EM  IF D P+A +N
Sbjct: 117 NDLHYVHEADAEAHSALLCVQSGSRLDDPNRFKFDGSGYYLKTAAEMRHIFRDFPDACDN 176

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           T+ IA RC+      A  +PR+   + +     E++    +   GL  R   G       
Sbjct: 177 TLLIAERCNVEFNTSANYMPRYPVPDGE----TEDSWFIKEVEKGLHYRYPSGI------ 226

Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
               R++ ++E+ VI +M F GYFL+VADFI W+K N I VGPGRGSGAGS+ AYA+ IT
Sbjct: 227 PDSVRKQAEYEIGVITQMGFPGYFLVVADFINWSKDNGIRVGPGRGSGAGSMVAYAMRIT 286

Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
           D+DPL+  L+FERFLNPDR+SMPDFD+DF   RR EVI YV  KYG ERVAQI+T+G+++
Sbjct: 287 DLDPLQHGLIFERFLNPDRVSMPDFDVDFDDRRRGEVIMYVTEKYGDERVAQIVTYGTIK 346

Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFRE 500
           +K AL+D  R L  P+   ++L K +P              DP HP   +A    + FR 
Sbjct: 347 SKQALKDASRVLCFPFGMGEKLTKAMPPAVMAKDIPLSGITDPEHPRYKEA----AEFRA 402

Query: 501 ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
               DP    + + +  LEGL R    HAAG+++   PL  ++P+ +  +    VTQF+ 
Sbjct: 403 VLTEDPEAKLVYDTALGLEGLKRQWGVHAAGVIMSSDPLIDIIPLQKREQDGQIVTQFDY 462

Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
              E  GLIK DFLGL+ LT++  +L+ +   RG ++DL  +  DD  +Y LL    TLG
Sbjct: 463 PTCEGLGLIKMDFLGLRNLTIISDALENIRLNRGEELDLERLELDDAPSYELLARGDTLG 522

Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL 677
           +FQL+   MR  L  M+PD  EDI A+++LYRPGP+  D+   Y  RKNG + I  IHP 
Sbjct: 523 VFQLDGGPMRGLLRLMKPDNFEDISAVLALYRPGPMGADSHTNYALRKNGLQPITPIHPE 582

Query: 678 IDPMLKE----TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
           ++  LK+    T G+IIYQEQVM IAQ ++G+SL +AD+LRRAMGKK K E+DKQ E F 
Sbjct: 583 LEEPLKDILETTYGLIIYQEQVMSIAQRVAGFSLGQADILRRAMGKKKKSELDKQYEGFS 642

Query: 734 SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            G  + G S+     ++++L  F+DY FNK+H+AAY V+SY TA++K HYP E++AA
Sbjct: 643 GGMKERGFSEAAIKALWDILLPFSDYAFNKAHSAAYGVVSYWTAYLKEHYPAEYMAA 699


>gi|297618290|ref|YP_003703449.1| DNA polymerase III subunit alpha [Syntrophothermus lipocalidus DSM
            12680]
 gi|297146127|gb|ADI02884.1| DNA polymerase III, alpha subunit [Syntrophothermus lipocalidus DSM
            12680]
          Length = 1031

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 315/1009 (31%), Positives = 534/1009 (52%), Gaps = 53/1009 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +HL VHS +S L+G  S+ +++D+ A    PA+A+TD +NL  A++F  +A  AGI+PI 
Sbjct: 1    MHLHVHSCFSFLDGGSSIKSLVDRAAESGMPALALTDHDNLCGAVQFKLEAQKAGIKPIQ 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +    +L                 LL    EGY+ L  ++++ +L D  ++  + 
Sbjct: 61   GVEVTVAGGYHL----------------TLLAEDEEGYRNLCRILTKAHL-DNPRRQPQA 103

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ-RH 189
             L  L+E   EG+I L+G   G I           A +  L + +++G D  Y+ LQ  +
Sbjct: 104  GLDILKE-HAEGIIALSGCRKGEIPARILSRQYDAAYRAALAYLEIWGKDGFYLELQDTY 162

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ--KDRPR 247
                R     + +LA    + +VATNN  +   ED++ HD+L  V   T V +   +RP 
Sbjct: 163  LPGTRTLNRDLAELAEKLGVGVVATNNVHYACPEDFKVHDILTCVRTLTRVYEVHPERP- 221

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  +++LK   EM  +F + P+A+ NT EIA RC   L+  A + PRF         +  
Sbjct: 222  LNAENHLKPEREMKKLFREYPQAVANTWEIAERCRPSLEPGASLFPRFNPPP----GQTA 277

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+ LR  A  G   R   G + +        +RL+ E+++I  + ++ YFL+V D +++A
Sbjct: 278  ESLLRELAYRG--ARKKYGRVTR-----RVEERLEHEIHIINTLGYADYFLVVWDIVEYA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I    GRGS A S  AY L IT++D L   LLFERF++ +R   PD DIDF    R
Sbjct: 331  RRQGI-RHTGRGSVADSFVAYCLGITEVDSLARGLLFERFMSLERAEKPDIDIDFDARWR 389

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D +  YV  KYG ++VA++ T+ + +A++A+R++G+AL +P +++DR+ K +P       
Sbjct: 390  DRISEYVTRKYGEDKVAKVCTYSTYRARSAVRELGKALGLPEAELDRVAKRLPYGAYADR 449

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                ++     RE+ L       LL++ +++ G  R   TH  G+V+   PL  + P+ +
Sbjct: 450  IRDMLSLLPELRESGLDRDKFALLLDLCERVAGFPRFLGTHLGGLVVSREPLCDITPLQQ 509

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
              + ++ VTQF+   +E+ GL+K D L L+ ++ ++ ++  + Q     D   IP DD  
Sbjct: 510  SAKGEI-VTQFDKDDVEELGLVKLDLLSLRAMSAVEDTVRAVKQEKKTFDYEKIPLDDDA 568

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRK 665
            TY ++    T+G+FQLES   R     +    IEDI+A V+L RPGPI   +V  Y +R+
Sbjct: 569  TYRMINKGQTIGVFQLESPAQRALQARLGASDIEDIVASVALIRPGPIKGNMVEPYISRR 628

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEE 724
             G+E +  +HP ++P+L +T GVI++QEQV++IA  ++ ++  EAD LR+ M   + ++ 
Sbjct: 629  QGREPVTFLHPALEPILAKTYGVILFQEQVIEIATAIARFTPGEADRLRKVMTHARSQKV 688

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MD+    FI  A +NG+S+  A  IF+ +A +A YGF ++HAAA+A  SY+TA++  HYP
Sbjct: 689  MDEVGREFIKKAVENGVSQEAAATIFKAMAGYASYGFCEAHAAAFATTSYKTAYLLRHYP 748

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             +F AA ++ +            +AR+  I+I+PP +N     F+V    I   LA +KG
Sbjct: 749  AQFYAAVLSNQPMGYYPPHVILNEARRRGIKILPPCINRSGEAFRVEKGGIRIPLARVKG 808

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +     + I+     +PF SL +   +     L R  +++L+  GALD F  +R +LL  
Sbjct: 809  LSREGLKKIL---VYRPFASLTEVWEKTG---LARDEMKNLIKCGALDVFDTNRRRLLVK 862

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYF 963
               +    Q       N  E I A + G  +D K+ +  F+ +    ++  E  +LG   
Sbjct: 863  ARKLYFRPQPA----GNVKEGIIAFDDGEAADAKMDIPDFTEDE---KYAMEFEILGLSP 915

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              H +  ++  L++ G K   +  A   G+ +++A +++   +  T+ G
Sbjct: 916  REHLMARFRGYLKRNGFKSSRDLAALPDGSWVKVAGVLLCPHRPPTKSG 964


>gi|296132555|ref|YP_003639802.1| DNA polymerase III, alpha subunit [Thermincola sp. JR]
 gi|296031133|gb|ADG81901.1| DNA polymerase III, alpha subunit [Thermincola potens JR]
          Length = 1028

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 331/1018 (32%), Positives = 522/1018 (51%), Gaps = 68/1018 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ +S L+GA  + +++ K      PAIA+TD NNL  A++F Q A AAGI+P
Sbjct: 2    SFVHLHVHTPFSFLDGAGKIEDLIAKAVEMGCPAIAMTDHNNLCGAVKFHQLATAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQS 128
            IIG +  I MQD   +T   + P               GY  L  +++  +L   +G  +
Sbjct: 62   IIGTE--ITMQDGHHLTLLARNPL--------------GYANLCRILTDGHLNSPRGYPT 105

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
            V+  LS L +     +I+L+G   G I         + A      +  LFG    ++ LQ
Sbjct: 106  VK--LSTLAK-HCRDIIILSGCRMGKIPSLILRGRFREALNTAAEYLHLFGRSNFFLELQ 162

Query: 188  R-----HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                   +  + Y    + QLA   ++ +VATNN  + ++E +  HD+L  V   T +  
Sbjct: 163  PPLLPGSQALNNY----LAQLAEQLKMDIVATNNVHYCTKEGFPVHDLLTCVRTLTKLED 218

Query: 243  -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                 R+  ++ LK+ +EM ++F   P A+ NT+ IA RC+  L+    I P F     +
Sbjct: 219  VHPERRLNAENDLKSPAEMANLFYQYPRAVHNTLMIADRCAPALKPPEKIFPSFPVPSGE 278

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                         A A L     +GA  + G   +   +RL+ EL++I R+ +  YFL+V
Sbjct: 279  ------------PAAAYLRRLTYEGARKRYGRLTRAITERLEHELDIICRLGYEDYFLLV 326

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +AKK  I    GRGS A S  AY L IT++D +   LLFERF++ +R   PD DI
Sbjct: 327  WDLVDYAKKQKIRYA-GRGSAADSAVAYCLFITEVDSINRGLLFERFMSLERAQKPDIDI 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF    RD V  Y+  KYG  RVA + T+ + +A++A RD+G+A+  P  ++D + K +P
Sbjct: 386  DFDSRYRDRVADYLYKKYGSNRVAGVCTYNTFRARSAFRDLGKAMDFPAEEIDLIAKRLP 445

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
               A  + L A+      RE  L      +L      + G  R  STH  GIV+   PL 
Sbjct: 446  FIRADQIDL-ALEKFPELREGGLPLEKYRQLFGYCTAVSGFPRFISTHLGGIVVSRDPLV 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
             L P+ +  +  + V+QF+ ++IE  GL+K D L L+T+++++ +   +     + D   
Sbjct: 505  NLTPLQKAAKG-IVVSQFDKEYIEDLGLVKLDLLSLRTMSVVENATLTIRAENPEFDYET 563

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D  TY LL T  T+G+FQLES   R     +Q  C+EDI+A V+L RPGPI   +V
Sbjct: 564  IPLNDKATYELLNTGQTIGVFQLESPAQRALQSRLQASCLEDIVASVALIRPGPIKGNMV 623

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  R++GKE +  +HP + P+L++T GV+++QEQV++IA +++G++  EAD LRR M 
Sbjct: 624  EPFIARRHGKEPVSYLHPKLKPILEKTYGVVLFQEQVIEIATVIAGFTPGEADRLRRVMT 683

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              +  E+M      F++ A  NGISK IA  IF  +  +A YGF ++HAAA+A  +Y+TA
Sbjct: 684  HARSHEDMLGIGREFVAKAIANGISKEIAETIFGYIVGYASYGFCEAHAAAFATTAYKTA 743

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++  HYP E+ AA ++ +          C +AR+  I I+PP +N    DF V    I  
Sbjct: 744  YLVKHYPAEYYAAILSHQPMGFYGSNTICVEARRRGINILPPDINLSQRDFTVEKGNIRI 803

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            SL+ +KG+  +   +I+      PF  ++DF +RV   K++R +L  L+  GA D    +
Sbjct: 804  SLSQVKGMKASVLDNILAERNIAPFSGIDDFLNRV---KIDRALLTHLILCGAFDSLHSN 860

Query: 898  RMQLLQSLDNIQKYAQWVEKNRT---NKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            R QLL           WV + RT    K E +   + G+    +   + +  +   +F  
Sbjct: 861  RKQLL----------WWVNQQRTFKLQKEERVC--QNGSLPVNLPWPEIADYSEVEKFNW 908

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            E ++LG     H +  ++  L K G     +  +   G  ++ A + +   +  TR G
Sbjct: 909  EYKILGIDVRRHYMSYWRAYLDKHGFTNSLKIKSLPHGAKVKAAGLPIRPHRPPTRSG 966


>gi|257081296|ref|ZP_05575657.1| DNA polymerase III alpha subunit [Enterococcus faecalis E1Sol]
 gi|256989326|gb|EEU76628.1| DNA polymerase III alpha subunit [Enterococcus faecalis E1Sol]
          Length = 1066

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 324/996 (32%), Positives = 522/996 (52%), Gaps = 68/996 (6%)

Query: 52   LFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
            +  A+EF +    AGIQPIIG +L+    +      +G +       ++L     +GYQ+
Sbjct: 1    MHGAVEFYEACQEAGIQPIIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQ 49

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L++L S   +  +G   +    S L +     L  +T  + G + + FF +  Q      
Sbjct: 50   LMQLSSSK-MTTEGPFYLAEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH--- 100

Query: 172  LTFKKL--FGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              F++L  + D   + ++     ++ R   +       +LP VA      L+ E+  A  
Sbjct: 101  -AFQQLASYFDPQSLFVEHSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVT 159

Query: 230  VLMAVAHST---VVSQKDRPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCS 282
            VL ++  +    + SQ   P +   +YL+       +M+ I     E ++NT+++A  C 
Sbjct: 160  VLESIKENNQLNITSQT--PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCR 215

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
              + +H  +LP F      D Q    + LR   +  L  R+        +  + Y++RL+
Sbjct: 216  VDIPLHQKLLPHF---PVPDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLE 264

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             EL +I  M F  YFLIV D + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ L
Sbjct: 265  KELTIIHNMGFDDYFLIVWDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDL 324

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R +MPD D+D   +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV 
Sbjct: 325  LFERFLNPERYTMPDIDLDIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVA 384

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            R   +  S+ +R    +PN     +  +A  +  R +E     P+   L + + +LEGL 
Sbjct: 385  RVFGLSQSEANRWSAAVPNKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLP 443

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            RH STHAAG+VI D  L  LVP+ +   +++ +TQF M  +EK GL+K DFLGL+ L+++
Sbjct: 444  RHVSTHAAGVVISDENLLNLVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSII 502

Query: 583  QKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              +L  + +     + L+ IP DD  T  L     T G+FQ ES+G+R  L  + P  IE
Sbjct: 503  DDTLTAVKRVYNRTIRLNQIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIE 562

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            DI A+ +LYRPGP+ NI V+  RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  
Sbjct: 563  DIAAVNALYRPGPMQNIDVFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAK 622

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            ++G+SL +AD+LRRA+ KK K+ +D+++  F++GA + G  K  A  +++ + +FA+YGF
Sbjct: 623  MAGFSLGQADILRRAISKKKKDVLDEERNHFVNGALQQGYPKETANQVYDYIERFANYGF 682

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            N+SHA AY+ I +Q A++K HYP  F  A +     N  KIK++  +AR+    I+ PS+
Sbjct: 683  NRSHAFAYSFIGFQMAYLKVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSI 742

Query: 822  NTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNR 879
            N     F +    +I +  +++KG+     ++I+ E   + P+ + ++F  R+D K L  
Sbjct: 743  NQSHYSFYLNQQQQILFGFSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKV 802

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
              +E L+  GA D    +R QL   L+ NIQ     +     +  E +   E        
Sbjct: 803  ENIEPLIAIGAFDEIAPNRRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE-------- 852

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRL 997
              E+ +      R E E++ LG Y SGHP + +K    K  +    + V  +  N   +L
Sbjct: 853  --EEIADYPLEERLEQEEQYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKL 906

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               V + +  +T+KG ++ +V   +         FP
Sbjct: 907  LIYVKNIRTIRTKKGEQMAFVDGDDTTGSISLTLFP 942


>gi|182418120|ref|ZP_02949420.1| DNA polymerase III subunit alpha [Clostridium butyricum 5521]
 gi|237666184|ref|ZP_04526171.1| DNA polymerase III subunit alpha [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377938|gb|EDT75478.1| DNA polymerase III subunit alpha [Clostridium butyricum 5521]
 gi|237658274|gb|EEP55827.1| DNA polymerase III subunit alpha [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 702

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 275/707 (38%), Positives = 420/707 (59%), Gaps = 31/707 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +E    FVHL +H+ YSLL+G+  +  ++ +       +IAITD   ++  ++F + A  
Sbjct: 1   MENEKKFVHLHLHTEYSLLDGSGKIKKLMKQTKELGMDSIAITDHGVMYGLVDFFKAAEE 60

Query: 65  AGIQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            GI+ I+GC++ +  +  ++K  ++  +       +VLLV    GYQ L+++VS M  ++
Sbjct: 61  YGIKAILGCEVYVAAKSMHIKQPDKENSTH----HLVLLVKNEIGYQNLMKIVS-MASIE 115

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                 RI   +L+   +EG+I L+    G +      ++ + A+K  L +K +F D  Y
Sbjct: 116 GFYYKPRIDHEYLKN-HSEGIIALSACLGGEVQSDLLNDNYEKAKKDALMYKDIFKDGFY 174

Query: 184 VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           + +Q H   ++ + +++ ++LA    +PLVATN+  ++ +ED ++HD+LM +  +  V  
Sbjct: 175 LEIQNHGMEEQKKVNELNIKLAEETGIPLVATNDVHYIKKEDSKSHDILMCIQTAKTVDD 234

Query: 243 KDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            +R R   D  YLK+  EM  +FS +PEALENTV+IA  C+F  + H   LP+F   E  
Sbjct: 235 PNRRRYPSDQFYLKSPEEMWDMFSYMPEALENTVKIADECNFKYKFHESKLPKFPLPEGK 294

Query: 302 DIQKEEENE---------------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
           D   E   E               LR K +   EV      +     AQ++  RL++EL 
Sbjct: 295 DDPYEYLKETCYTGLIDRYDVFKDLREKELDYDEV---NKIVENSSEAQEFVDRLEYELG 351

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
           VI +M +  YFLIV DFI+++  N IP GPGRGS AGS+ AY L IT IDP+++SL+FER
Sbjct: 352 VIKQMGYIDYFLIVWDFIKFSYDNGIPTGPGRGSAAGSIVAYTLGITKIDPIKYSLIFER 411

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           FLNP+R+SMPD D DFC +RR EVI YV  KYG + V+QIITFG++ A+  +RDVGRA+ 
Sbjct: 412 FLNPERVSMPDVDSDFCYERRQEVIDYVVRKYGKDCVSQIITFGTMAARLCIRDVGRAMN 471

Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
             YS+VD++ K+IP      +  +A+  +   + A  +D  V  L+++S  LEGL RH+S
Sbjct: 472 YSYSEVDKIAKMIPTMLGITIE-KALDLNPELKIAYDSDERVKNLIDVSMDLEGLPRHSS 530

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
           THAAG+VI  +PL + VP+ ++  S   VTQF M  +E+ GL+K DFLGL+TLT++  ++
Sbjct: 531 THAAGVVIASKPLVEYVPLQKNDES--IVTQFGMNTLEELGLLKMDFLGLRTLTVMSDAI 588

Query: 587 DFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             +   RGV +DL  I FDD E Y ++    T G+FQLES GM   ++ ++PD +EDIIA
Sbjct: 589 KMVKVNRGVDIDLDKIDFDDKEVYKMIGEGRTAGVFQLESPGMTSFMKELKPDNLEDIIA 648

Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +SLYRPGP+  I  Y   K   +K+    P ++ +L  T GV++YQ
Sbjct: 649 GISLYRPGPMAEIPRYIECKRNPDKVEYETPELESILNVTYGVMVYQ 695


>gi|257893645|ref|ZP_05673298.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,408]
 gi|293560684|ref|ZP_06677168.1| DNA polymerase III subunit alpha [Enterococcus faecium E1162]
 gi|257830024|gb|EEV56631.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,408]
 gi|291605358|gb|EFF34808.1| DNA polymerase III subunit alpha [Enterococcus faecium E1162]
          Length = 1027

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 285/792 (35%), Positives = 439/792 (55%), Gaps = 34/792 (4%)

Query: 248  VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +T + YL +  EM+  F  + L +A+     +A   SF  Q H  +LP +         K
Sbjct: 140  LTANVYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG----K 195

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +    LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFLIV D + 
Sbjct: 196  QAGEYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFLIVWDVMA 248

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D   +
Sbjct: 249  FAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPDN 308

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN    
Sbjct: 309  RREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKI 368

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++ QA     +  E   A      L + +  LEGL RH STHAAG+VI D+ L +LVP+
Sbjct: 369  TLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLLELVPL 427

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
             R    +  +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  IP +
Sbjct: 428  QRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLKEIPLN 486

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  R
Sbjct: 487  DAKTLLLFQRGETSGVFQFESAGIRNVLRRLDPENIEDIAAVNALYRPGPMQNIDTFIAR 546

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+ 
Sbjct: 547  KKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKDV 606

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A++K H+P
Sbjct: 607  LDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHP 666

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIK 843
              F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AIK
Sbjct: 667  GAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFGLTAIK 726

Query: 844  GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            G+       I+ E   + PF S++ F  R+D + L   +L+SL   G  D    +R QL+
Sbjct: 727  GIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQLM 786

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              L+   K    V    +     I A ++   +D    E+  +E   +         G Y
Sbjct: 787  LDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL---------GIY 835

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             SGHP + +     ++ +    + +  I  N  + L  M+   ++ +T+KG  + +V  +
Sbjct: 836  LSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMAFVEGT 891

Query: 1022 EPAKEYEANFFP 1033
            + + E     FP
Sbjct: 892  DSSGEISVTVFP 903


>gi|227504715|ref|ZP_03934764.1| DNA polymerase III subunit alpha [Corynebacterium striatum ATCC 6940]
 gi|227198725|gb|EEI78773.1| DNA polymerase III subunit alpha [Corynebacterium striatum ATCC 6940]
          Length = 1190

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 324/1020 (31%), Positives = 539/1020 (52%), Gaps = 63/1020 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+ SFVHL  H+ +S+L+G   ++ + D++   + PA+ +TD  N++ +  F +K  +
Sbjct: 1    MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVRQEMPAVGMTDHGNMYGSNAFYKKMTS 60

Query: 65   AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113
            AG++PIIG +  +  + + N K    G TP      +          +L   A G + L 
Sbjct: 61   AGVKPIIGIEAYMAPESRFNKKRVLWG-TPDQKRDDVSASGAYLHQTMLAENATGLKNLF 119

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +L S      Q  +  R+    + E   EG+I  TG  SG +           A +    
Sbjct: 120  KLSSLASYEGQLGKWPRMDAELIAE-HAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAM 178

Query: 174  FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            ++ ++G D  ++ L  H G D   R R+  ++++    +LP + TN+  ++ E    +H+
Sbjct: 179  WQDIYGKDNFFLELMDH-GLDIEKRTRDG-LLEIGRKLDLPPLVTNDCHYVLESQAPSHE 236

Query: 230  VLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQV 287
             ++ V         DR +     +Y+K+ ++M  I+ D+ P+  +NT+ IA R    +Q 
Sbjct: 237  AMLCVQTGKTFMDPDRFKFDGTGYYIKSAAQMREIWDDMIPDGCDNTLWIAER----VQD 292

Query: 288  HAPILPRFIEKECDDIQKEEENE----LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            +  I               E +     L ++ + GL+ R     +      ++Y +R ++
Sbjct: 293  YGEIWEEHTHDRMPIADVPEGHTPTSWLTHEVMEGLQDRFPGKEVP-----EEYVKRAEY 347

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            E++VI    +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LL
Sbjct: 348  EISVIDMKGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGALVAYALTITNIDPIEHDLL 407

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R S PD DIDF   RR E+I+Y  +++G ++VAQ+ITFG+++ K A++D  +
Sbjct: 408  FERFLNPERPSAPDIDIDFDDRRRGEMIQYAADRWGEDKVAQVITFGTVKTKQAIKDSAK 467

Query: 464  AL--QMPYSQVDRL-CKLIPNDPAHPVSLQAIAD--DSRFREAR------LADPSVDRLL 512
                Q  +   DR+   L P   A  + L  I D    R+ EA         DP V ++ 
Sbjct: 468  VHFGQPGFQMADRINGALPPAIMAKDIPLAGIMDPEHERYSEATEVRQMIETDPDVKKIY 527

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            E ++ LEG+ R A  HA  +++    L   +PM++       +T ++    E  GL+K D
Sbjct: 528  ETARGLEGVVRQAGVHACAVIMASVRLMDHIPMWQRPADGAYITGWDYPACEAIGLLKMD 587

Query: 573  FLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD---HETYHLLTTKGTLGIFQLESSGM 628
            FLGL+ LT++   L+ + + RG ++ L  I  DD    + Y LL+   TLG+FQL+S GM
Sbjct: 588  FLGLRNLTVIGDCLENIKKNRGEEIHLEEIHADDPNVSKVYELLSRGETLGVFQLDSGGM 647

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---L 682
            ++ L+ M+P   +DI+A ++LYRPGP  ++    Y +RKNG+++I  IHP L +P+   L
Sbjct: 648  QELLKRMKPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLREIL 707

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
             ET G+I+YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + +Q ++F  G  +NG S
Sbjct: 708  DETYGLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMQENGYS 767

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
            K     ++  +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K 
Sbjct: 768  KDAMDALWGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKS 827

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-P 861
              +  D R   I ++ P VN    +F+     I + + AI+ VG+     I++   +K  
Sbjct: 828  AIYLSDCRHLGIHVLSPDVNESVENFQAVGEDIRFGMGAIRNVGSEVVESIVKTRKEKGA 887

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEK 917
            + S  D+  +++     +RV ESL+ AGA D   + R  L+     ++D +Q   +  +K
Sbjct: 888  YTSFSDYLDKIELTACTKRVTESLIKAGAFDSMEHPRKGLMLIHEDAVDAVQTTKKAADK 947

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE--NEQRVLGFYFSGHPLDVYKPIL 975
             + +        E+   +    ++    EN   + E   E+ +LG Y SGHPLD ++  L
Sbjct: 948  GQFDLFAGFGGEEQAEVASAFAID-IPDENWDRKHELALEREMLGLYVSGHPLDGFEEAL 1006


>gi|241889100|ref|ZP_04776404.1| DNA polymerase III subunit alpha [Gemella haemolysans ATCC 10379]
 gi|241864349|gb|EER68727.1| DNA polymerase III subunit alpha [Gemella haemolysans ATCC 10379]
          Length = 1089

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 326/1048 (31%), Positives = 553/1048 (52%), Gaps = 102/1048 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            + ++QVHS+Y LL   +   ++  K+A D Q ++ I D N ++ A++  + +   GI  I
Sbjct: 2    YYNMQVHSAYDLLNSTIKYESLFSKLAKDNQKSVVIVDPN-MYGAIKAYKASKKVGINLI 60

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G ++++     L   N             LL  T + + +L+E+ ++      G++   
Sbjct: 61   QGLEVNLGYGIGLLKFN-------------LLCKTEKMFYKLLEISTKFM---NGEE--- 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR----LLTFKKLFGDRLYVNL 186
                W  E            ++  ID    F  + V E R        K L        L
Sbjct: 102  ----WTVE----------DFANDMIDYREDFVLTVVDELRDSMEFSYLKNL--------L 139

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             ++  Y  + ES  V L Y+    +V T  S +L++E Y+   V  A+  +  ++ +   
Sbjct: 140  SKYDFYFGFNESFQVGL-YSDYDNIVYTKPSFYLNKEHYQQVIVSRAIRDNKKLNIQGLT 198

Query: 247  RVTPDHYLKNRSEMVSI--------FSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
             ++ D +++ + +   I        ++   ++  N   I   C + L      LP++I  
Sbjct: 199  TISGDDFVREKKDFEEILALGDEELYAIFEKSFANQKLIIDSCEYELNFSGYHLPKYIYG 258

Query: 299  ECDDI-QKEEENELRNKAV-AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            E ++I +K    E  +  V  G++ +L       G     Y++R  +EL +I  M F+ Y
Sbjct: 259  EKEEIFEKLSSKEYLHYLVQKGVKEKLI------GKDLYQYQKRYSYELKIIDEMGFNDY 312

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV DF+++AK N I VG GRGS AGS+  Y L IT+ DPL ++LLFERFLN +R+SMP
Sbjct: 313  FLIVYDFVKYAKDNGILVGAGRGSAAGSLVCYLLDITEADPLEYNLLFERFLNKERISMP 372

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D DIDF   RRDEVI+YV+ KYG ++VAQIITF + Q+K+A R+  R LQ      ++  
Sbjct: 373  DIDIDFQDTRRDEVIKYVEEKYGSDKVAQIITFTTFQSKSAARESARILQFD----EQTL 428

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVD-RLLEISQKLEGLYRHASTHAAGIVIG 535
            K I ++ +   +L+   + S      +   +++ R   I+  LE L ++ S HAAGIVI 
Sbjct: 429  KFISSNISSTRTLKECYEISEELRTFINTSNINKRWFSIALSLEHLPKNPSVHAAGIVIS 488

Query: 536  D-RPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            D +PL    P+     S++   +TQ+ M  +E  GL+K DFLG++ LT++   ++ + + 
Sbjct: 489  DDKPLVNYTPL---AESNMTKYLTQWTMDDVESVGLLKIDFLGIRYLTMVSSIVEEIRKE 545

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                D++ I + D + Y L     T GIFQ ESSGM++ L  ++P    DI+A+ +LYRP
Sbjct: 546  NPAFDITKINYQDPKVYELFAKGKTEGIFQFESSGMKEKLNLLKPTEFNDIVAMNALYRP 605

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP+  I VY  RKN +E+++  HP ++ +LK+T GVI+YQEQ+M IA   +  SL+EAD 
Sbjct: 606  GPMAQIEVYVRRKNKEEQVIYPHPHLEKILKDTYGVIVYQEQIMLIAVNFAHMSLNEADN 665

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +RRA+ KK KE+++     F+  +   G    +A  +F+L+  FA+YGFNKSHA  Y+++
Sbjct: 666  MRRAVSKKKKEDLEYYGRIFVEKSVAAGYDIKVAEKLFDLIVTFANYGFNKSHAVVYSML 725

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +Y+ A++K +Y   F+ A +   + + +KI ++ Q+     I ++ P VN    +F+V  
Sbjct: 726  AYRLAYLKVYYTKHFMTALLNNVISSEKKINEYKQELMNLGINLVKPDVNRSLANFRVFK 785

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            N I ++L AIK VG  +   I++   +  P+  ++DF  R++ KK++ +   SLV AGAL
Sbjct: 786  NDIVFALTAIKNVGYRSGYEIVQDRINFGPYLDIDDFLKRMN-KKVDYQAAVSLVKAGAL 844

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNR--TNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            D FGY+R  L++ +++      +   NR   N      + E G     +TL+   +E+ S
Sbjct: 845  DTFGYNRATLMKKVND------YYSDNRQFINNVRVALSAESG-----LTLKVEEIEDYS 893

Query: 950  V--RFENEQRVLGFYFSGHPLDVYKPILRKMGIK--GYEESVATIRGNNIRLAAMVVSKQ 1005
            +  + + E+ V G YF  HP+ V K     + ++  G E S + +          +++++
Sbjct: 894  ITEKIQMEKEVTGTYFLKHPVQVEKEKYSYLPLQYIGGEVSDSYVE---------IITRK 944

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +T+ G  + ++T ++   +Y+   FP
Sbjct: 945  EIRTKNGDYMAFLTVNDGKNDYDVTVFP 972


>gi|300933332|ref|ZP_07148588.1| DNA polymerase III subunit alpha [Corynebacterium resistens DSM
            45100]
          Length = 1189

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 338/1066 (31%), Positives = 547/1066 (51%), Gaps = 78/1066 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+G   ++ +  +      PA+ +TD  N+F A  F +   AA I+P
Sbjct: 5    SFVHLHNHTEYSMLDGMAKVDMLAAEAKRQGMPAVGMTDHGNMFGADAFYRAMTAADIKP 64

Query: 70   IIGCQLDID-----MQDNLKMTNQGKTPFPTVPSIVLLVST-----AEGYQRLIELVSRM 119
            IIG +  I       Q+ ++  N  +       S   L  T     A G + L  L S  
Sbjct: 65   IIGIEAYIAPESRFNQNRVRWGNPEQKSDDVSASGAYLHQTMIAENATGLRNLFYLSSLA 124

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
                Q  +  R+    + E   EG+I  TG  SG +           A +    ++ ++G
Sbjct: 125  SYEGQLGKWPRMDAELIAE-HAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAKWQDIYG 183

Query: 180  -DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             D  ++ L  H G +   R RE  ++++    +LP + TN+  ++ E    AH+V++ V 
Sbjct: 184  KDNFFLELMDH-GLEIERRVRED-LLEIGRRLDLPPLVTNDCHYVLESQAAAHEVMLCVQ 241

Query: 236  HSTVVSQKDRPRVT----------PDHYLKNRSEMVSIFS-DLPEALENTVEIARRC--- 281
              + +   D P +             +YL+   ++ + +  ++P+  +NT+ +A R    
Sbjct: 242  TGSTL---DEPTLDEGGKRFAFSGTGYYLRTAEDLRAQWDKEVPKGCDNTLWVAERVQDY 298

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEE--NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
            S + + H      F      D+ + E     L ++ + GLE R     +       +Y  
Sbjct: 299  SEVWEEHP-----FDRMPIADVPEGETPTTWLTHEVMKGLEDRFPGKPVPT-----EYID 348

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            R  +E+ VI    +  YFLIVA+ I++A+   I VGPGRGS AGS+ AYALTIT+IDP+ 
Sbjct: 349  RAKYEIEVIDMKGYPSYFLIVAELIKYARSVGIRVGPGRGSAAGSLVAYALTITNIDPME 408

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              LLFERFLNP+R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K A++
Sbjct: 409  HGLLFERFLNPERPSAPDIDIDFDDRRRGEMIRYASDRWGEDKIAQVITFGTVKTKQAIK 468

Query: 460  DVGRAL--QMPYSQVDRLCK-LIPNDPAHPVSLQAIAD--DSRFREAR------LADPSV 508
            D  RA   Q  +   DR+ K L P   A  + L  I D    R+ EA         DP V
Sbjct: 469  DSARAHYGQAGFQMADRITKALPPAIMAKDIPLSGIMDPEHERYNEAAEVRNLIETDPDV 528

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
            +++ + ++ LEG+ R A  HA  +++   PL   +PM++  +    +T +     E  GL
Sbjct: 529  NKIYQDARGLEGVVRQAGVHACAVIMSSVPLLDCIPMWKRKQDGALITGWPYPACEAIGL 588

Query: 569  IKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            +K DFLGL+ LT++  +L+ + A R   +DL  +  +D  TY LL    TLG+FQL+S G
Sbjct: 589  LKMDFLGLRNLTVIGDALENIKANRDFDLDLENLSTEDEPTYELLARGETLGVFQLDSGG 648

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM--- 681
            M++ L+ M+P    DI+A ++LYRPGP  +     Y +RKNG++ IV IHP L +P+   
Sbjct: 649  MQELLKRMKPTGFNDIVAALALYRPGPMGVGAHWEYADRKNGRKPIVPIHPELEEPLQEI 708

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L+ET G+I+YQEQ+M+I+Q ++ Y+  +AD  R+AMGKK  E ++K+   F SG   NG 
Sbjct: 709  LEETYGLIVYQEQIMKISQKVANYTAGQADGFRKAMGKKKPEVLEKEFVNFESGMKDNGF 768

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            S      +++ +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K
Sbjct: 769  SDAAIKTLWDTILPFAGYAFNKSHAAGYGLVSFWTAYLKANYAPEYMAALLTSVADKKDK 828

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK- 860
               +  D R   I+++ P VN     F+     I + L A++ VG      I+ +  +K 
Sbjct: 829  SAIYLADCRHLGIRVLSPDVNESAYTFQSVGEDIRFGLGAVRNVGEEVVESIIRSREEKG 888

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             F    D+  +++    ++RV ESL+ AGA D  G+ R  L+   ++        +K   
Sbjct: 889  AFKDFSDYLDKIEIAAASKRVTESLIKAGAFDSLGHPRKGLVLVHEDAVDAVTSTKKAAA 948

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPI 974
                ++FA   G   D+   + F V+     ++       E+ +LG Y SGHPLD ++  
Sbjct: 949  KGQFDLFA---GFGDDEAVGDVFRVDVPDQNWDRKHELAMERDMLGLYVSGHPLDGFEDA 1005

Query: 975  LRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWV 1018
            L           ++    NN  +++  ++ S +++  R G+   WV
Sbjct: 1006 LDAQVDTPLTTVLSGELPNNREVKIGGIISSVERRVDRNGNP--WV 1049


>gi|258614449|ref|ZP_05712219.1| DNA polymerase III, alpha subunit [Enterococcus faecium DO]
          Length = 1013

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 285/792 (35%), Positives = 439/792 (55%), Gaps = 34/792 (4%)

Query: 248  VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +T + YL +  EM+  F  + L +A+     +A   SF  Q H  +LP +         K
Sbjct: 126  LTANVYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG----K 181

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +    LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFLIV D + 
Sbjct: 182  QAGEYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFLIVWDVMA 234

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D   +
Sbjct: 235  FAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPDN 294

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN    
Sbjct: 295  RREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKI 354

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++ QA     +  E   A      L + +  LEGL RH STHAAG+VI D+ L +LVP+
Sbjct: 355  TLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLLELVPL 413

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
             R    +  +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  IP +
Sbjct: 414  QRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLKEIPLN 472

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  R
Sbjct: 473  DAKTLLLFQRGETSGVFQFESAGIRNVLRRLDPENIEDIAAVNALYRPGPMQNIDTFIAR 532

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+ 
Sbjct: 533  KKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKDV 592

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A++K H+P
Sbjct: 593  LDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHP 652

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIK 843
              F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AIK
Sbjct: 653  GAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFGLTAIK 712

Query: 844  GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            G+       I+ E   + PF S++ F  R+D + L   +L+SL   G  D    +R QL+
Sbjct: 713  GIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQLM 772

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              L+   K    V    +     I A ++   +D    E+  +E   +         G Y
Sbjct: 773  LDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL---------GIY 821

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             SGHP + +     ++ +    + +  I  N  + L  M+   ++ +T+KG  + +V  +
Sbjct: 822  LSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMAFVEGT 877

Query: 1022 EPAKEYEANFFP 1033
            + + E     FP
Sbjct: 878  DSSGEISVTVFP 889


>gi|326803733|ref|YP_004321551.1| DNA polymerase III, alpha subunit [Aerococcus urinae
            ACS-120-V-Col10a]
 gi|326651141|gb|AEA01324.1| DNA polymerase III, alpha subunit [Aerococcus urinae
            ACS-120-V-Col10a]
          Length = 1124

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 326/1044 (31%), Positives = 535/1044 (51%), Gaps = 70/1044 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L V++SY+LL+  + + + ++   A     +AI+D N ++  ++F        I P+
Sbjct: 2    FTPLNVNTSYTLLKSPMPVKDYVEAAKALDYQNLAISDVNVMYGVIDFYNYCKHYDINPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ-GKQSV 129
            IG  + I   D                  ++     +GY+ L+ L S +   +    Q+V
Sbjct: 62   IGMTVSIQRPDQRDQE-----------EWLIYAKNDQGYRSLMRLSSLIKSQEPIDYQAV 110

Query: 130  RICL-----SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
            R  +     +W         I +   ++GP          + A   L   +++F    LY
Sbjct: 111  RDFIFNNHRNW---------ITIIEANNGPHMHFLKQQREEEAAAFLDKLREIFKASDLY 161

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQ 242
            + +        Y ++ +  LA   ++PL+A +   +LS+ D    DVL A+  +  + + 
Sbjct: 162  MGVDESY---LYHQAALEDLAKESQIPLIAQSKLAYLSKNDVFTQDVLAAIEVNQPLDNY 218

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            +++       +L++ +     + +  L +A +   E        +Q    +LP++     
Sbjct: 219  REKAGAEGQFFLRSLASYQESYQNKGLAKAFDQVSEAFDGVHLDIQFDQALLPKY---PI 275

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +  Q  +E  L++ A  GL  R+         + Q YR+RLD+EL++I +M F+ YFLIV
Sbjct: 276  ESGQSSKEF-LKDLAYQGLSKRVG--------NEQSYRERLDYELSIIDQMGFNDYFLIV 326

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +A K +I  GPGRGS AGS+ AY L ITD+DP+R  LLFERFLNP+R SMPD D+
Sbjct: 327  WDVMDYAHKKHIMTGPGRGSAAGSLVAYCLFITDVDPIRNHLLFERFLNPERQSMPDIDL 386

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  D+R +++ YV +KYG + VAQI TFG+  A+ A+RDVG A     + + R    I 
Sbjct: 387  DFPDDKRQDILNYVYHKYGSDHVAQISTFGTFAARKAIRDVGNAFNKSQATMSRWANTIS 446

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   +    +A    S+ ++    +       + ++K+EGL RH STHAAG+++ D+ L+
Sbjct: 447  SQ--NQTLEEAYQSSSQLQQYIAEEEDGQLWFQTAKKIEGLPRHVSTHAAGVILSDQDLT 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              +P+   +   +  +Q+ M  IE+ GL+K DFL L  LT+L  S+   A++  K  L  
Sbjct: 505  DFIPLQAALNHSIHQSQYTMHEIERIGLLKIDFLSLSNLTILANSVR-AAEKISKSRLRP 563

Query: 601  IPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            I F  +D   Y + +   TLG+FQ ES+G+R+ L  ++P  + D+ A+ +LYRPGP+  I
Sbjct: 564  IDFPRNDQSVYRVFSQANTLGVFQFESNGIRRVLRRVKPSSMADLAAVNALYRPGPMQQI 623

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + NRK+GKE I   HP ++ +LKET G+I+YQEQVMQ+AQ ++G+SL EAD+LRR + 
Sbjct: 624  NHFVNRKHGKEPITYPHPDLEGILKETYGIIVYQEQVMQVAQKIAGFSLGEADILRRTIS 683

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK K  MD+ + +FI  A   G S+++A  I+  +  FADYGFNKSHA AY+ ++Y+ AW
Sbjct: 684  KKDKATMDRLQAKFIRQAVAKGYSQSVAPKIYSYIEAFADYGFNKSHAYAYSYLAYEMAW 743

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYY 837
            +K HYP  F   ++        K ++   +A    +++  P VN      +V D++ I  
Sbjct: 744  LKVHYPAAFYYGNLLQHKIYETKGQQLTYEASLCQVKLQLPDVNRSYTTMQVVDDQHILL 803

Query: 838  SLAAIKGVGTT-TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LA I+G+    T   + E      + SL DF  R+         LE L  AGALD FGY
Sbjct: 804  GLADIRGLMRNFTTAIVQERLNGGQYRSLGDFIQRLPKNYSKADNLEKLALAGALDSFGY 863

Query: 897  SRMQLLQSLDNIQKYAQWVE--KNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFE 953
            +R  L++  + + K  + V       N+  ++F  E +  ++ +I  +  +  +  +  E
Sbjct: 864  NRRTLIE--EALPKLLEAVNLFGGSNNQQLSLFNQENRELYAPEI--KHLNEYDDRLLLE 919

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGI----KGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             EQ  LG   S      Y+P  +   I    K  ++S  TI G        +V  ++ +T
Sbjct: 920  GEQETLGQSISVELYSDYRPYYQNGQIQPINKLSDKSQVTIIGE-------IVKVKRIQT 972

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            +K   + ++T  +   E E   FP
Sbjct: 973  KKNQPMAFLTLRDEHSEVEVIAFP 996


>gi|326692987|ref|ZP_08229992.1| DNA-directed DNA polymerase III, alpha chain [Leuconostoc argentinum
            KCTC 3773]
          Length = 1117

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 333/1046 (31%), Positives = 532/1046 (50%), Gaps = 80/1046 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQ+ S+YSLL+   ++  I+         AIA+TD N ++ A+EF + A    ++P+
Sbjct: 2    YAPLQILSAYSLLKNPNTIPQIIATAKVRHYEAIALTDLNVMYGAVEFYRTALENNLKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L+++      + N   T FP    ++L+  T  GYQ L+ L S         ++  
Sbjct: 62   FGVTLEVN-----GLVNTATT-FP----MILISETQVGYQNLMWLSSA----KMTAKTPD 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS--QVAEKRLLTFKKLFGDRLYVNLQR 188
            + L+ L +   EG+ ++  G S   + + F  S+   VA+        +    LY+ +  
Sbjct: 108  LTLAALSD-HLEGINVILPGDS---ELSQFIASAYDDVAQYWQTLTTYIAPTHLYLGINP 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST------VVSQ 242
                    ++++ +     +  L+A ++  +L+ +D     VL ++  +        +SQ
Sbjct: 164  QMAPQI--QTRLAEFQAATQAQLIALDDVAYLNTDDAFTTQVLKSIDANVKLEGIKALSQ 221

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAPILPRFIEKEC 300
            +   ++  D+   N+ +     SDL +A  L N   +AR    +       LP F   + 
Sbjct: 222  QSGTQILQDY---NQVKAAYQTSDLLKAAFLANEALVARSQVTLTFSQTAALPAF---QL 275

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFL 358
                 +    LR  A  GL  RL      +G H     Y+  L  EL VI ++ F+ YFL
Sbjct: 276  PAGMPDAGTYLRTLAEKGLAARL------QGLHVDQSRYQALLAHELAVIDQLGFNDYFL 329

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV D + +A +N+I +G GRGS AGS+ AYAL ITD+DPL+F LLFERFLN DR+ MPD 
Sbjct: 330  IVWDIVNFAYQNHIQLGAGRGSAAGSLVAYALRITDVDPLQFGLLFERFLNADRVQMPDI 389

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DID+  ++RD V++Y+ +KYG    AQI+TFG+L AK ALRD  R   +    + R+   
Sbjct: 390  DIDWPDNKRDVVLKYLHDKYGQRNFAQILTFGTLAAKQALRDTARVFGVSQQMMSRISNA 449

Query: 479  IPNDP-AHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +P       VS+Q A+      ++          LL+++Q++EGL R+ STHAAG+V+  
Sbjct: 450  VPTGKQGRKVSIQDALQAGDGLQKVLSEIDDGQLLLKVAQQIEGLPRNYSTHAAGVVLSA 509

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVK 595
              L   +P+       L +TQF    +E  GL+K D LGL  L++L ++L +   Q    
Sbjct: 510  DTLVHTLPVQSGTDERL-LTQFEKDTVEALGLLKIDVLGLSNLSILAQTLYEARHQLPEH 568

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             D+S +P DD  T  L     T GIFQ ES+G++  L  +QP   E I+A+ SLYRPGP 
Sbjct: 569  FDISRVPLDDAATLALYAKGDTNGIFQFESAGIKHVLRQLQPATFEHIVAVNSLYRPGPS 628

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             NI  +  R++G E +      +  +L  T G+I+YQEQVM +A+  +G +L EADVLR 
Sbjct: 629  RNIESFIKRRHGLEPVTVPDASLKTILAPTFGIIVYQEQVMLVAEAYAGLTLGEADVLRS 688

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AM KK   +M   +E+FI+GA   G  +  A  IF  + +FA+YGFN+SHA AY+ +S+Q
Sbjct: 689  AMSKKKLTQMAAMQEKFINGAVALGHDRQEAAQIFAYIDEFANYGFNRSHAVAYSKLSFQ 748

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
             A+MK HYP  F  A +   + + EK++ +  +A+   +Q+  P +N     + V    +
Sbjct: 749  LAYMKAHYPAAFFTAVLNANLGSPEKVRLYVAEAKARQLQVAAPHINQSQRFWTVNQGVL 808

Query: 836  YYSLAAIKGVGTT-TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               L  I+G+ T   A  + E +A+ PF S++ F  R+  K   R  L  LV+AGALD F
Sbjct: 809  QMGLNNIRGLRTDFVATVLAERTANGPFQSIQSFVRRLPEKFRKRDTLRQLVYAGALDTF 868

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI----TLEKFSVENSSV 950
            GY+RM+L+ +LD++                     E  +F D I     ++K    + + 
Sbjct: 869  GYNRMELVTALDDLI--------------------EAASFGDLILNETKIKKMPDWDLTE 908

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE----SVATIRGNNIRLAAMVVSKQQ 1006
            +   E+  +G   SG+PLD Y  ++       Y+E    +  T +   + + A++   + 
Sbjct: 909  KLAYEKEAIGVNLSGYPLDGYASLIAD---HNYQEIADLTEKTDKKQPVTVIALIDQVRT 965

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +T+KG  + +VT S+         F
Sbjct: 966  TRTKKGEEMAFVTVSDATGTTSVTVF 991


>gi|168700398|ref|ZP_02732675.1| DNA polymerase III alpha subunit [Gemmata obscuriglobus UQM 2246]
          Length = 1617

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 292/793 (36%), Positives = 444/793 (55%), Gaps = 34/793 (4%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +  F HL +H+ YSLL+G   +  ++ +       A+AITD  NL+ A+EF  +    GI
Sbjct: 2   AKCFCHLHLHTHYSLLDGFNRIQPLVKQTKELGMNAVAITDHGNLYGAIEFYMECKKGGI 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           +PIIG +  +     L   ++G+  F T   + LL     G++ LI+L S  YL +   +
Sbjct: 62  KPIIGYEAYLAPGSRLDRDSKGELGFST--HLTLLAQNETGFKNLIKLSSSAYL-EGFYR 118

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
           + RI    L E   +GLI L+G  +G  ++    +  Q AEK    F+K+FG+  ++ +Q
Sbjct: 119 NPRIDRQIL-EAHKDGLICLSGCLAGEFNQYIIKDKPQEAEKTAKWFRKVFGENYFIEIQ 177

Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV----AHSTVVSQ 242
            +  G           +A    +PLVAT ++ +L  ED +AHD+L  +     H     +
Sbjct: 178 NNGIGLQDQCTPVAADIANRLGVPLVATADAHYLCAEDAQAHDILFCINTRQMHDPRKKK 237

Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
               R+   +++++  +M  +F +  +A+  + EIA + +  L       P F   E   
Sbjct: 238 YPEERMPNPYFVRSPEDMYRLFPNYQDAVARSQEIADKVNIDLDFKKRHFPVFTTPE--- 294

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             +  E  LR     G+E R       +G  ++  R+RLD EL +IARM FS YFLIV D
Sbjct: 295 -GRTPEQYLRELCERGMEERY------EGKASEAVRKRLDHELGIIARMGFSSYFLIVWD 347

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           F+++A++  IP    RGSG G++  Y L ++ + P+ + LLFERFL+P+R   PD DIDF
Sbjct: 348 FVRFAREEGIPC-TARGSGCGAIVCYLLYMSHVCPIEYDLLFERFLDPNRSEAPDIDIDF 406

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           CQDRR+ VI YV+ KYG E VAQI TFG+L AKAAL+DVGR L     +++ LCKL+P  
Sbjct: 407 CQDRRELVIDYVKKKYGEESVAQIGTFGTLAAKAALKDVGRVLGQTPDRMNALCKLVPMK 466

Query: 483 PAHPVSLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            A   SLQ   D+S  F+     DPS+ ++++I+ KLEG  R+   HAAG+VI + P++ 
Sbjct: 467 GAISKSLQEALDESPDFKREYDQDPSIKQVVDIALKLEGANRNVGKHAAGVVIANGPVTN 526

Query: 542 LVPMYR-------DVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            VP+ R       D  SD      TQ+ M  +EK GL+K DFLGL+ LT+L   +  + +
Sbjct: 527 YVPVQRPPKKGGSDEGSDDTTTMTTQWEMGILEKVGLLKMDFLGLRNLTVLDNCVKLIKK 586

Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            RG+ V+ +  P  D  TY LL      G+FQLES G+R+ L+ M+PD I D+IA+++LY
Sbjct: 587 TRGITVEPTKFPLTDEATYQLLQRGDAKGVFQLESEGIRELLKRMKPDNIRDLIAVLALY 646

Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
           RPGP++  +V  Y   KN +++    HP+++ +L ET  V++YQEQ+M+I   L G  L+
Sbjct: 647 RPGPLEGGMVDEYVECKNKRKQPFYPHPVMEEVLSETFAVMVYQEQIMRILNKLGGIELA 706

Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
           +A    +A+ KK  E ++ +K  F++GA + G+    A  IFEL+ KF  YGFNK   A 
Sbjct: 707 KAYACIKAISKKNFEIINARKVDFVTGAKERGLEAEKADEIFELIVKFGGYGFNKCVVAG 766

Query: 769 YAVISYQTAWMKT 781
             V   +T  + T
Sbjct: 767 TEVTDAETGAVVT 779



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/267 (34%), Positives = 131/267 (49%), Gaps = 17/267 (6%)

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF---CQDARQFNIQIMP 818
            + SH AAYA I YQTA++KTHY  E++AA ++ E+D+  K   F     DAR+  + ++P
Sbjct: 1206 HNSHTAAYAQIGYQTAYLKTHYTAEYMAALLSSEIDDGNKRDVFIDHISDARRLGVDVLP 1265

Query: 819  PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKL 877
            P VN    DF V +NRI + L AIKGVG   A  I+ A  +   F  L DFC RVD + +
Sbjct: 1266 PDVNRGMADFDVLNNRIIFGLTAIKGVGRGAALEIVRARNEGGKFKDLFDFCERVDRRII 1325

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHEKG 932
             +  +E ++ AGA D FG    Q            Q   + R  +   +F     A + G
Sbjct: 1326 AKAAVEGMIQAGAFDVFGKRSAQFAAVAKAYAVADQRAAEKRKGQ-TGLFDDVEEAADAG 1384

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
              +  +T      E   ++FE E   LGFY S HPL  +   LR+   + ++  V    G
Sbjct: 1385 PTNQGLTDVPEWPETERLKFEKE--ALGFYISSHPLAQHDEQLRRF--RTHDCGVLAKGG 1440

Query: 993  NN---IRLAAMVVSKQQKKTRKGSRIG 1016
             N    R+A M+ +   +   KG  IG
Sbjct: 1441 KNGTEARIAGMITNLDVRTANKGRNIG 1467


>gi|262184456|ref|ZP_06043877.1| DNA polymerase III subunit alpha [Corynebacterium aurimucosum ATCC
            700975]
          Length = 1193

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 326/1020 (31%), Positives = 534/1020 (52%), Gaps = 63/1020 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+ SFVHL  H+ +S+L+G   ++ + D++     PA+ +TD  N++ +  F Q+  +
Sbjct: 4    MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVLRQGMPAVGMTDHGNMYGSNAFYQRMTS 63

Query: 65   AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113
            AG++PIIG +  L  + + N K    G TP      +          +L     G + L 
Sbjct: 64   AGVKPIIGIEAYLAPESRFNKKRVLWG-TPDQKRDDVSASGAYLHQTMLAENETGLRNLF 122

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +L S      Q  +  R+    + E   EG+I  TG  SG +           A +    
Sbjct: 123  KLSSLASYEGQLGKWPRMDAELIAE-HAEGIIATTGCPSGDVQTRLRLGQFNEALEAAAM 181

Query: 174  FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            ++ ++G D  ++ L  H G D   R R+  ++++    +LP + TN+  ++ E    +H+
Sbjct: 182  WQDIYGKDNFFLELMDH-GLDIEKRTRDG-LLEIGRKLDLPPLVTNDCHYVLESQAPSHE 239

Query: 230  VLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQV 287
             ++ V         DR +     +Y+K+ ++M  ++  + PEA +NT+ IA R    +Q 
Sbjct: 240  AMLCVQTGKTFMDPDRFKFDGTGYYIKSAAQMRELWDHMVPEACDNTLWIAER----VQD 295

Query: 288  HAPILPRFIEKECDDIQKEE----ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            +  I               E     + L ++ + GL+ R   G +      Q+Y  R ++
Sbjct: 296  YGAIWEEHTHDRMPIADVPEGYTPTSWLTHEVMEGLKDRFNGGDVP-----QEYIDRAEY 350

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            E++VI    +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LL
Sbjct: 351  EISVIDMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPIEHGLL 410

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R S PD DIDF   RR E+I Y   ++G ++VAQ+ITFG+++ K A++D  +
Sbjct: 411  FERFLNPERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAK 470

Query: 464  AL--QMPYSQVDRL-CKLIPNDPAHPVSLQAIAD--DSRFREAR------LADPSVDRLL 512
                Q  +   DR+   L P   A  + L  I D    R+ EA         DP V ++ 
Sbjct: 471  VHFGQPGFQMADRINGALPPAIMAKDIPLAGIMDPEHERYSEATEVRQMIETDPDVKKIY 530

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            E ++ LEG+ R A  HA  +++    L   +PM++       +T ++    E  GL+K D
Sbjct: 531  ETARGLEGVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMD 590

Query: 573  FLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD---HETYHLLTTKGTLGIFQLESSGM 628
            FLGL+ LT++   L+ + + RG +V L  +  DD    + Y LL+   TLG+FQL+S GM
Sbjct: 591  FLGLRNLTVIGDCLENIKKNRGEEVHLEDLHADDPNASKVYDLLSRGDTLGVFQLDSGGM 650

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK--- 683
            ++ L+ M+P   +DI+A ++LYRPGP  ++    Y +RKNG+++I  IHP ++  LK   
Sbjct: 651  QELLKRMKPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEIL 710

Query: 684  -ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
             ET G+I+YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + +Q ++F  G   NG S
Sbjct: 711  DETYGLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMKDNGYS 770

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
            K     ++  +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K 
Sbjct: 771  KEAMDALWGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKS 830

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-P 861
              +  D R   I+++ P VN     F+     I + + AI+ VG      I++   +K  
Sbjct: 831  AIYLADCRHLGIRVLSPDVNESVETFQAVGEDIRFGMGAIRNVGGEVVDSIVKTRREKGA 890

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEK 917
            F S  D+  +++    ++RV ESL+ AGA D   + R  L+     ++D++Q   +  +K
Sbjct: 891  FTSFSDYLDKIELAACSKRVTESLIKAGAFDSLEHPRKGLMLIHEDAVDSVQTTKKAADK 950

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE--NEQRVLGFYFSGHPLDVYKPIL 975
             + +        ++G       ++    EN   + E   E+ +LG Y SGHPLD ++  L
Sbjct: 951  GQFDLFAGFGGDDQGDSVSAFAID-IPEENWDRKHELALEREMLGLYVSGHPLDGFEEAL 1009


>gi|257877689|ref|ZP_05657342.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC20]
 gi|257811855|gb|EEV40675.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC20]
          Length = 1103

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 331/1051 (31%), Positives = 545/1051 (51%), Gaps = 100/1051 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+YSLL+  + + + +++        + +TD N L+ A+EF Q+  A GI+PI
Sbjct: 2    YSQLTTLSAYSLLQSTIKIPHYIEQAKKMGYQTLGLTDHNVLYGAVEFYQQCLAQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G   D           +G   FP    + +     +GYQ L+ L S   + +Q   +  
Sbjct: 62   FGALFDCTF-------GEGSMSFP----LYVFAKNLKGYQTLMRLSSEKMITEQLNLAAC 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              L  L  +  EG   L               ++Q A + +    K   + L++ +   +
Sbjct: 111  DSLQDLFGLLPEGEGFLPSQHDD-------LEANQEALRAI--SHKFDSESLFLGITS-K 160

Query: 191  GYD-----RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--QK 243
            G D      + E  +   AY    P+ A      L++E+  A  V+M +   + +   ++
Sbjct: 161  GLDPETIAWFNEQNIAPCAYQ---PIAA------LAQEEAFAVKVMMHIKEGSQIEDFRQ 211

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---IEKEC 300
             + +     +L+   ++ + F +  +AL N   IA  C+  L +H  +LP +    E+  
Sbjct: 212  AKEQGAAQLFLQPADQLTAAFEEWSQALMNNQRIAAECAVELPLHQRLLPHYPLPAEESA 271

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D        LR      L  R+A    A       Y QRLD+EL+VI +M F  YFLI+
Sbjct: 272  ADY-------LRKICFERLPQRVAHVTSA-------YEQRLDYELSVIHKMGFDDYFLII 317

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +A +  I  G GRGS AG++ AY L+ITD+DP+++ LLFERFLNP+R +MPD D+
Sbjct: 318  WDVMDFAHQQEIVTGAGRGSAAGALVAYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 377

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RRDE+++YV+ KYG E +AQI TFG++ AK  LRDV R   +  S+ +R  K IP
Sbjct: 378  DIPDNRRDEILQYVRQKYGQEYMAQIATFGTMAAKMVLRDVSRVFGLSQSEANRWSKAIP 437

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     + L A    ++ RE    +     + ++++ LEGL RH STHAAG+VI D+ L 
Sbjct: 438  NALKMTLDL-AYEQSNQLRELVSFNERNHVMFQVAKILEGLPRHVSTHAAGVVISDKNLL 496

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
             LVP+ ++    + +TQF M  +E  GL+K DFLGL+ L+++  +L     +G+K     
Sbjct: 497  DLVPL-QEGSDGIWLTQFTMNDVEAIGLLKMDFLGLRNLSIIDNTL-----KGIKRISQQ 550

Query: 596  -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V    IP DD  T  L     T GIFQ ES+G+R  L  + P+ IEDI A+ +LYRPGP
Sbjct: 551  IVTQKEIPLDDPATLRLFQKGETAGIFQFESAGIRNVLRKLGPESIEDIAAVNALYRPGP 610

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + NI  +  RK G+E++      + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LR
Sbjct: 611  MQNIDTFIKRKKGQERVSYPDDSLIPILQNTYGIIVYQEQIMQVASKMAGFSLGQADILR 670

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RA+ KK K+ +D+++  F+ GA  N   +  A  +++ + +FA+YGFN+SHA AY+ I +
Sbjct: 671  RAISKKKKDVLDEERRHFVQGALANQYDEKTANLVYDYIERFANYGFNRSHAFAYSFIGF 730

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDN 833
            Q A++K HYP  F A+ +    +   K+K++  +A ++ ++++PPS+N     F++  + 
Sbjct: 731  QMAYLKVHYPAPFFASILHSVRNTASKMKEYLNEAARYGVEVLPPSINASGFSFQLQNEK 790

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAG 889
            +I +  ++IKG+     + I+ E      F S++ F  R+   +SK L    L  L+  G
Sbjct: 791  QIRFGFSSIKGIRRDMIQDILAERKQHGNFTSMDQFLLRLNQRNSKWLKLDYLLPLLSIG 850

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
              D    +R Q L  L+               K +NI  +  G+      LE  +++  +
Sbjct: 851  VFDVIAPNRKQALIQLE--------------GKIQNI-TYSGGSLD---LLETMALKEEA 892

Query: 950  V-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            V       +   E+  LG Y SGHP++ ++ + +   I    + V   R   +R+   V 
Sbjct: 893  VADYKLEEKLALEEEYLGVYLSGHPVEQFQKLHQLKQITDIADLVPNER---VRILLYVR 949

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              ++ +T+KG ++ +V  ++ +KE     FP
Sbjct: 950  KIREIRTKKGEQMAFVEGTDASKEVSVTIFP 980


>gi|325571261|ref|ZP_08146761.1| DNA-directed DNA polymerase III alpha subunit [Enterococcus
            casseliflavus ATCC 12755]
 gi|325155737|gb|EGC67933.1| DNA-directed DNA polymerase III alpha subunit [Enterococcus
            casseliflavus ATCC 12755]
          Length = 1103

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 331/1050 (31%), Positives = 547/1050 (52%), Gaps = 98/1050 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+YSLL+  + + + +++        + +TD N L+ A+EF Q+  A GI+PI
Sbjct: 2    YSQLTTLSAYSLLQSTIKIPHYIEQAKKMGYQTLGLTDHNVLYGAVEFYQQCLAQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G   D           +G   FP    + +     +GYQ L+ L S   + +Q   +  
Sbjct: 62   FGALFDCTF-------GEGSMSFP----LYVFAKNLKGYQTLMRLSSEKMITEQLNLAAC 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              L  L  +  EG   L               ++Q A + +    K   + L++ +   +
Sbjct: 111  DSLQDLFGLLPEGEGFLPSQHDD-------LEANQEALRAI--SHKFDSESLFLGI-TSK 160

Query: 191  GYD-----RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--QK 243
            G D      + E  +   AY    P+ A      L++E+  A  V+  +   + +   ++
Sbjct: 161  GLDPETIAWFNEQNIAPCAYQ---PIAA------LAQEEAFAVKVMTHIKDGSQIEDFRQ 211

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             + + T   +L+   ++ + F +  +AL N   IA  C+  L +H  +LP +       +
Sbjct: 212  AKEQATTQLFLQPADQLTASFGEASQALMNNQRIAAECAVELPLHQRLLPHY------PL 265

Query: 304  QKEEE--NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             +EE   + LR      L  R+A    A       Y QRLD+EL+VI +M F  YFLI+ 
Sbjct: 266  AQEESAADYLRKICFERLPQRVAHVTSA-------YEQRLDYELSVIHKMGFDDYFLIIW 318

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A +  I  G GRGS AG++ AY L+ITD+DP+++ LLFERFLNP+R +MPD D+D
Sbjct: 319  DVMDFAHQQEIVTGAGRGSAAGALVAYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLD 378

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
               +RRDE+++YV+ KYG E +AQI TFG++ AK  LRDV R   +  S+ +R  K IPN
Sbjct: 379  IPDNRRDEILQYVRQKYGQEYMAQIATFGTMAAKMVLRDVSRVFGLSQSEANRWSKAIPN 438

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 + L A    ++ RE    +     + ++++ LEGL RH STHAAG+VI D+ L  
Sbjct: 439  ALKMTLDL-AYEQSNQLRELVSFNERNQVMFQVAKILEGLPRHVSTHAAGVVISDKNLLD 497

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------ 595
            LVP+ ++    + +TQF M  +E  GL+K DFLGL+ L+++  +L     +G+K      
Sbjct: 498  LVPL-QEGSDGIWLTQFTMNDVEAIGLLKMDFLGLRNLSIIDNTL-----KGIKRISQQI 551

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            V    IP DD  T  L     T GIFQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+
Sbjct: 552  VTQKEIPLDDPATLRLFQKGETAGIFQFESAGIRNVLRKLGPESIEDIAAVNALYRPGPM 611

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             NI  +  RK G+E++      + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRR
Sbjct: 612  QNIDTFIKRKKGQERVSYPDDSLIPILQNTYGIIVYQEQIMQVASKMAGFSLGQADILRR 671

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            A+ KK K+ +D+++  F+ GA  N   +  A  +++ + +FA+YGFN+SHA AY+ I +Q
Sbjct: 672  AISKKKKDVLDEERRHFVQGALANHYDEKTANLVYDYIERFANYGFNRSHAFAYSFIGFQ 731

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834
             A++K HYP  F A+ +    +   K+K++  +A ++ ++++PPS+N     F++  + +
Sbjct: 732  MAYLKVHYPAPFFASILHSVRNTASKMKEYLNEAARYGVEVLPPSINASGFSFQLQNEKQ 791

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890
            I +  ++IKG+     + I+ E      F S++ F  R+   +SK L    L  L+  G 
Sbjct: 792  IRFGFSSIKGIRRDMIQDILAERKEHGNFTSMDQFLLRLNQRNSKWLKLDYLLPLLSIGV 851

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R Q L  L+               K +NI  +  G+      LE  +++  +V
Sbjct: 852  FDGIAPNRKQALIQLE--------------GKIQNI-TYSGGSLD---LLETMALKEEAV 893

Query: 951  -------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                   +   E+  LG Y SGHP++ ++ + +   I    + V   R   +R+   V  
Sbjct: 894  ADYKLEEKLALEEEYLGVYLSGHPVEQFQKLHQLKQITDIADLVPNER---VRILLYVRK 950

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++ +T+KG ++ +V  ++ +KE     FP
Sbjct: 951  IREIRTKKGEQMAFVEGTDASKEVSVTIFP 980


>gi|227833468|ref|YP_002835175.1| DNA polymerase III, alpha subunit [Corynebacterium aurimucosum ATCC
            700975]
 gi|227454484|gb|ACP33237.1| DNA polymerase III, alpha subunit [Corynebacterium aurimucosum ATCC
            700975]
          Length = 1190

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 326/1020 (31%), Positives = 534/1020 (52%), Gaps = 63/1020 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+ SFVHL  H+ +S+L+G   ++ + D++     PA+ +TD  N++ +  F Q+  +
Sbjct: 1    MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVLRQGMPAVGMTDHGNMYGSNAFYQRMTS 60

Query: 65   AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113
            AG++PIIG +  L  + + N K    G TP      +          +L     G + L 
Sbjct: 61   AGVKPIIGIEAYLAPESRFNKKRVLWG-TPDQKRDDVSASGAYLHQTMLAENETGLRNLF 119

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +L S      Q  +  R+    + E   EG+I  TG  SG +           A +    
Sbjct: 120  KLSSLASYEGQLGKWPRMDAELIAE-HAEGIIATTGCPSGDVQTRLRLGQFNEALEAAAM 178

Query: 174  FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            ++ ++G D  ++ L  H G D   R R+  ++++    +LP + TN+  ++ E    +H+
Sbjct: 179  WQDIYGKDNFFLELMDH-GLDIEKRTRDG-LLEIGRKLDLPPLVTNDCHYVLESQAPSHE 236

Query: 230  VLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQV 287
             ++ V         DR +     +Y+K+ ++M  ++  + PEA +NT+ IA R    +Q 
Sbjct: 237  AMLCVQTGKTFMDPDRFKFDGTGYYIKSAAQMRELWDHMVPEACDNTLWIAER----VQD 292

Query: 288  HAPILPRFIEKECDDIQKEE----ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            +  I               E     + L ++ + GL+ R   G +      Q+Y  R ++
Sbjct: 293  YGAIWEEHTHDRMPIADVPEGYTPTSWLTHEVMEGLKDRFNGGDVP-----QEYIDRAEY 347

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            E++VI    +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LL
Sbjct: 348  EISVIDMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPIEHGLL 407

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R S PD DIDF   RR E+I Y   ++G ++VAQ+ITFG+++ K A++D  +
Sbjct: 408  FERFLNPERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAK 467

Query: 464  AL--QMPYSQVDRL-CKLIPNDPAHPVSLQAIAD--DSRFREAR------LADPSVDRLL 512
                Q  +   DR+   L P   A  + L  I D    R+ EA         DP V ++ 
Sbjct: 468  VHFGQPGFQMADRINGALPPAIMAKDIPLAGIMDPEHERYSEATEVRQMIETDPDVKKIY 527

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            E ++ LEG+ R A  HA  +++    L   +PM++       +T ++    E  GL+K D
Sbjct: 528  ETARGLEGVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMD 587

Query: 573  FLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD---HETYHLLTTKGTLGIFQLESSGM 628
            FLGL+ LT++   L+ + + RG +V L  +  DD    + Y LL+   TLG+FQL+S GM
Sbjct: 588  FLGLRNLTVIGDCLENIKKNRGEEVHLEDLHADDPNASKVYDLLSRGDTLGVFQLDSGGM 647

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK--- 683
            ++ L+ M+P   +DI+A ++LYRPGP  ++    Y +RKNG+++I  IHP ++  LK   
Sbjct: 648  QELLKRMKPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEIL 707

Query: 684  -ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
             ET G+I+YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + +Q ++F  G   NG S
Sbjct: 708  DETYGLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMKDNGYS 767

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
            K     ++  +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K 
Sbjct: 768  KEAMDALWGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKS 827

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-P 861
              +  D R   I+++ P VN     F+     I + + AI+ VG      I++   +K  
Sbjct: 828  AIYLADCRHLGIRVLSPDVNESVETFQAVGEDIRFGMGAIRNVGGEVVDSIVKTRREKGA 887

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEK 917
            F S  D+  +++    ++RV ESL+ AGA D   + R  L+     ++D++Q   +  +K
Sbjct: 888  FTSFSDYLDKIELAACSKRVTESLIKAGAFDSLEHPRKGLMLIHEDAVDSVQTTKKAADK 947

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE--NEQRVLGFYFSGHPLDVYKPIL 975
             + +        ++G       ++    EN   + E   E+ +LG Y SGHPLD ++  L
Sbjct: 948  GQFDLFAGFGGDDQGDSVSAFAID-IPEENWDRKHELALEREMLGLYVSGHPLDGFEEAL 1006


>gi|257867601|ref|ZP_05647254.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC30]
 gi|257873931|ref|ZP_05653584.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC10]
 gi|257801657|gb|EEV30587.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC30]
 gi|257808095|gb|EEV36917.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC10]
          Length = 1103

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 330/1051 (31%), Positives = 546/1051 (51%), Gaps = 100/1051 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+YSLL+  + + + +++        + +TD N L+ A+EF Q+  A GI+PI
Sbjct: 2    YSQLTTLSAYSLLQSTIKIPHYIEQAKKMGYQTLGLTDHNVLYGAVEFYQQCLAQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G   D           +G   FP    + +     +GYQ L+ L S   + +Q   ++ 
Sbjct: 62   FGALFDCTF-------GEGSMSFP----LYVFAKNLKGYQTLMRLSSEKMITEQ--LNLA 108

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
             C S     G     +L  G      +     ++Q A + +    K   + L++ +   +
Sbjct: 109  ACDSLQDLFG-----LLPEGEGFLPSQHDDLEANQEALRAI--SHKFDSESLFLGI-TSK 160

Query: 191  GYDR-----YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--QK 243
            G D      + E  +   AY    P+ A      L++E+  A  V+  +   + +   ++
Sbjct: 161  GLDSETIAWFNEQNIAPCAYQ---PIAA------LAQEEAFAVKVMTHIKEGSQIEDFRQ 211

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---IEKEC 300
             + +     +L+   ++ + F +  +AL N   IA  C+  L +H  +LP +    E+  
Sbjct: 212  AKEQGAAQLFLQPADQLTAAFEEWSQALMNNQRIAAECAVELPLHQRLLPHYPLPAEESA 271

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D        LR      L  R+A    A       Y QRLD+EL+VI +M F  YFLI+
Sbjct: 272  ADY-------LRKICFERLPQRVAHVTSA-------YEQRLDYELSVIHKMGFDDYFLII 317

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +A +  I  G GRGS AG++ AY L+ITD+DP+++ LLFERFLNP+R +MPD D+
Sbjct: 318  WDVMDFAHQQEIVTGAGRGSAAGALVAYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 377

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RRDE+++YV+ KYG E +AQI TFG++ AK  LRDV R   +  S+ +R  K IP
Sbjct: 378  DIPDNRRDEILQYVRQKYGQEYMAQIATFGTMAAKMVLRDVSRVFGLSQSEANRWSKAIP 437

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            N     + L A    ++ RE    +     + ++++ LEGL RH STHAAG+VI D+ L 
Sbjct: 438  NALKMTLDL-AYEQSNQLRELVSFNERNQVMFQVAKILEGLPRHVSTHAAGVVISDKNLL 496

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
             LVP+ ++    + +TQF M  +E  GL+K DFLGL+ L+++  +L     +G+K     
Sbjct: 497  DLVPL-QEGSDGIWLTQFTMNDVEAIGLLKMDFLGLRNLSIIDNTL-----KGIKRISQQ 550

Query: 596  -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V    IP DD  T  L     T GIFQ ES+G+R  L  + P+ IEDI A+ +LYRPGP
Sbjct: 551  IVTQKEIPLDDPATLRLFQKGETAGIFQFESAGIRNVLRKLGPESIEDITAVNALYRPGP 610

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + NI  +  RK G+E++      + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LR
Sbjct: 611  MQNIDTFIKRKKGQERVSYPDDSLIPILQNTYGIIVYQEQIMQVASKMAGFSLGQADILR 670

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RA+ KK K+ +D+++  F+ GA  N   +  A  +++ + +FA+YGFN+SHA AY+ I +
Sbjct: 671  RAISKKKKDVLDEERRHFVQGALANQYDEKTANLVYDYIERFANYGFNRSHAFAYSFIGF 730

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDN 833
            Q A++K HYP  F A+ +    +   K+K++  +A ++ ++++PPS+N     F++  + 
Sbjct: 731  QMAYLKVHYPAPFFASILHSVRNTASKMKEYLNEAARYGVEVLPPSINASGFSFQLQNEK 790

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAG 889
            +I +  ++IKG+     + I+ E      F S++ F  R+   +SK L    L  L+  G
Sbjct: 791  QIRFGFSSIKGIRRDMIQDILAERKEHGNFTSMDQFLLRLNQRNSKWLKLDYLLPLLSIG 850

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
              D    +R Q L  L+               K +NI  +  G+      LE  +++  +
Sbjct: 851  VFDGIAPNRKQALIQLE--------------GKIQNI-TYSGGSLD---LLETMALKEEA 892

Query: 950  V-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            V       +   E+  LG Y SGHP++ ++ + +   I    + V   R   +R+   V 
Sbjct: 893  VADYKLEEKLALEEEYLGVYLSGHPVEQFQKLHQLKQITDIADLVPNER---VRILLYVR 949

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              ++ +T+KG ++ +V  ++ +KE     FP
Sbjct: 950  KIREIRTKKGEQMAFVEGTDASKEVSVTIFP 980


>gi|298528545|ref|ZP_07015949.1| DNA polymerase III, alpha subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512197|gb|EFI36099.1| DNA polymerase III, alpha subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 782

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 288/801 (35%), Positives = 451/801 (56%), Gaps = 33/801 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL  H+ YSL EG + +  +  K A  + PA++ITD+ NL+ A++    A   GI+PI
Sbjct: 4   FAHLHCHTEYSLFEGCIRIEELCSKAAEYKMPAVSITDSGNLYGAMKLYSAAREYGIKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129
           IGC++++      K+T++ K  +     +VLL     GY  L++LVS  +L  QG     
Sbjct: 64  IGCEINLVPG---KVTDRDKFNY----HLVLLAMDLRGYHNLVKLVSAGWL--QGFYYKP 114

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPID---RAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
           R+    LQ+  ++G+I L+    G +    RA  F+    A    + + +++ DR Y+ L
Sbjct: 115 RVDKDMLQKY-SDGIIALSACLKGEVQYLLRAKGFDQGLEAA---MQYARIYPDRFYLEL 170

Query: 187 QRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +   GY+   E   ++++L+    LP+VA N+  +L+ +D EAH VL  + ++  + ++D
Sbjct: 171 EA-SGYNEQAEVNDRLMELSEKTGLPIVAANDCRYLTPQDAEAHAVLKCIKNAERLDEQD 229

Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              + T + Y K+  EM   FS  P ALEN  +I  +C+  L      LPR+     D +
Sbjct: 230 LDNLDTRELYFKSPEEMEKEFSYCPTALENVHKIVEQCNLDLDSPKRHLPRYKPTIEDTL 289

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            KE    L   A+ GL+ +LA   +      + Y  RLD EL ++     S YFL+V D+
Sbjct: 290 DKE----LTALALNGLDEKLA--TLPYKVDREKYFTRLDKELKILCEQGKSWYFLVVYDY 343

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           + WA+   I VGPGRGS  G +TAYAL IT IDP+   L FERF N  R  + D D+D C
Sbjct: 344 VAWARSRGIAVGPGRGSAPGCMTAYALGITGIDPILHKLHFERFCNTKRAGVVDIDVDLC 403

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
           Q+RR EV  YV  KYG   V  I  F  ++A+   RDV   + +   Q +R+ +LIP +P
Sbjct: 404 QERRQEVFDYVFEKYGQNSVVYISVFICMRARTVFRDVSLVIGISPEQAERIIQLIPQEP 463

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              +S +A+  +   R     +  + R  +I  +LEGL RH ++HAA IVI +  L   +
Sbjct: 464 GMTIS-KAMEMEPALRSIMNDNEKMQRCFDICTRLEGLIRHITSHAARIVISNENLQDYL 522

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
           P+YR    +L + Q++   +E+ G   FD LGLK L+L+ ++LD + A +    D+  +P
Sbjct: 523 PLYRGRNHEL-IAQYDYNDLERLGFPGFDLLGLKYLSLISRTLDLIKASQKQAPDMDSLP 581

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            DD +T+ L+    T G FQLE  G RQ L  ++P+ +ED+ A+++LYRPGP+ + ++ N
Sbjct: 582 LDDAKTFVLIEQGHTDGAFQLEGDGFRQYLRELKPERLEDLAAMLALYRPGPLVSGMLSN 641

Query: 663 --NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
              R++G+      H  +  +LKET G+IIY EQVM IA  ++G+SL +A++L + +  K
Sbjct: 642 FIKRRHGRVAAEYAHAELADILKETHGMIIYHEQVMTIAHKIAGFSLEDAEILAKNLVGK 701

Query: 721 IKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
             E + +QKE+FI GA  KN +    A  IF+++ +   YG+ K+H+ AYA+ISYQTA++
Sbjct: 702 KPEALIQQKEKFIKGAMQKNNVPVKTAEQIFDMMKQAGPYGYLKAHSIAYAMISYQTAFL 761

Query: 780 KTHYPVEFLAASMTLEMDNVE 800
           K +YP EF  A  T+   N++
Sbjct: 762 KANYPEEFQQAKDTVFGKNMK 782


>gi|227432231|ref|ZP_03914227.1| possible DNA-directed DNA polymerase [Leuconostoc mesenteroides
            subsp. cremoris ATCC 19254]
 gi|227352004|gb|EEJ42234.1| possible DNA-directed DNA polymerase [Leuconostoc mesenteroides
            subsp. cremoris ATCC 19254]
          Length = 1112

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 275/733 (37%), Positives = 424/733 (57%), Gaps = 40/733 (5%)

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L   AV+GL+ RL    ++       Y +RL  EL  I  + FS YFLIV D + +A KN
Sbjct: 283  LEKIAVSGLKKRLQGHNVSLNL----YEERLQHELKTIEVLGFSDYFLIVWDIVNFAHKN 338

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ AY+L ITD+DPL+F+LLFERFLN +R+ MPD DID+   +R+E+
Sbjct: 339  HIQTGPGRGSVAGSLVAYSLQITDVDPLQFNLLFERFLNDERVQMPDIDIDWPPSKREEL 398

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSL 489
              Y+  KYG     QIITFG+L +K ALRDVGR   +P   + +L   IP       VS+
Sbjct: 399  FTYLHQKYGKRNFGQIITFGTLASKQALRDVGRVFGLPTPTLSKLSASIPEGKNGRKVSI 458

Query: 490  QAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                   + + A L D    RLL + + K+EGL ++ STHAAGIV+   PL Q +P+   
Sbjct: 459  DDALKAPQLQNA-LRDIDNGRLLLQTALKIEGLPKNYSTHAAGIVLSANPLVQTLPVQSG 517

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV--KVDLSLIPFDDH 606
                L +TQF    +E+ GL+K D LGL+ L +L ++L + AQ+ +  + D++ I  DD 
Sbjct: 518  TEGRL-LTQFEKDPVEQLGLLKIDILGLQNLAILSQAL-YYAQKELPERFDITKIVLDDA 575

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T G+FQ ES+G++  L  ++P   E I+A+ +LYRPGP  NI  +  R++
Sbjct: 576  KTLALFAKGDTNGVFQFESAGIKNVLRKLKPATFEHIVAVNALYRPGPAQNIDKFIARRH 635

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GKE +    P +  +L  T G+I+YQEQVM +A+  +G++L EADVLR AM KK  ++M 
Sbjct: 636  GKEAVTISDPSLKSILALTFGIIVYQEQVMLVAESYAGFTLGEADVLRSAMSKKKVDKMQ 695

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K  E+FI GA KNG  +  A  IF  + +FA+YGFN+SHA AY+ ++++ A++K HYPV 
Sbjct: 696  KLHEQFIKGALKNGHDQEQAELIFSYIDEFANYGFNRSHAVAYSKLAFELAYLKAHYPVA 755

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  A +   +   +K++++  +A+   I ++ P VN     +   +N++   L  I+GV 
Sbjct: 756  FFTALLNANLGEQKKVQQYVSEAKIRGIVVLAPDVNKSYKFWTSIENQLQMGLNNIRGVR 815

Query: 847  TTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            T     ++E   +   F +++ F  R+  K   R VLE LV+AGALD FGY+R +L++++
Sbjct: 816  TDFVTSVLEERQNNGSFQTIQSFVRRLPDKMRKREVLEQLVYAGALDSFGYNRRELIENI 875

Query: 906  DNIQKYAQW----VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             ++ + A +    +E+ +  K+++ FA      SD              R + E+ V+G 
Sbjct: 876  ASLIEGASFGNLILEETKIKKYDD-FA-----LSD--------------RLKKEKEVIGV 915

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTF 1020
              SGHPLD Y   + +    G+ +    ++ + + ++ A+V S +Q +T+KG  + +V  
Sbjct: 916  NLSGHPLDTYVDFILE---NGFSQIGNVVQPSQVEKIIAIVDSIRQIRTKKGDDMAFVKV 972

Query: 1021 SEPAKEYEANFFP 1033
            S+   E     FP
Sbjct: 973  SDTTGEISVTIFP 985



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 10/107 (9%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  LQ+ SSYSLL+   ++  I+         AIA+ D N ++ A+E+ ++    GI+P+
Sbjct: 2   YAPLQILSSYSLLKNPNTIEQIVQTAKTRGYEAIALADVNVMYGAIEWFRQTKKHGIKPL 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            G  L   M + L  T    T FP    +VLL     GYQ L+ L S
Sbjct: 62  FGLTL---MVNGLVNT---ATLFP----VVLLAENQVGYQNLMWLSS 98


>gi|116492856|ref|YP_804591.1| DNA polymerase III catalytic subunit, DnaE type [Pediococcus
            pentosaceus ATCC 25745]
 gi|116103006|gb|ABJ68149.1| DNA polymerase III catalytic subunit, DnaE type [Pediococcus
            pentosaceus ATCC 25745]
          Length = 1107

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 321/1042 (30%), Positives = 552/1042 (52%), Gaps = 75/1042 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV LQV SSYSLL   + +++++         A+ +TD N ++  +EF Q      ++P
Sbjct: 2    AFVPLQVLSSYSLLSSPIKIDDLIATAKNRGYQAMTLTDHNTMYGTVEFYQACIKNNLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-RM------YLL 122
            I+G  L +D            T      ++VL+  + +GY+ L+++ S +M      ++ 
Sbjct: 62   IVGLTLWLD----------STTGIDNQFALVLIAKSVKGYRNLMQISSAKMTSSTPKFVF 111

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR- 181
            D  K  +   +  +    +E + +L  G SG             A + L  ++++ GD  
Sbjct: 112  DDIKDLLDDLIMIVPAQRSEMIELLERGLSGD------------ATELLENYRQVVGDED 159

Query: 182  --LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              L +NL++           ++Q+A  H L  +   +  +L+ ED+ A  VL  +A   V
Sbjct: 160  LYLGINLKQ----TNIMRQTLMQIAEKHSLGCLPLPSVEYLNSEDHFATQVLKDIASGEV 215

Query: 240  VSQKD-RPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFI 296
            +   +   +   +++LK R      + D  L E L+    +  +    +    P LP+F 
Sbjct: 216  IKHPEILAKDQGNNWLKPRDVFEKEYRDAGLSELLDQLDALTSQIELKIPFVQPKLPKFP 275

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFS 354
                            N++       L    + K  +AQ+  Y+QRLD ELNVI  M F+
Sbjct: 276  TPA-------------NQSAIQYLKELCFQQLEKSKNAQNLQYQQRLDRELNVIESMGFA 322

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFLIV D +Q+A +N+I  GPGRGS AGS+ AY L IT +DP+ + LLFERFLNP+R  
Sbjct: 323  DYFLIVHDVVQFAHQNHILTGPGRGSAAGSLVAYLLRITSVDPIEYGLLFERFLNPERAQ 382

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL-QMPYSQVD 473
            MPD D+D   D+R+ +++YV +KYGH+ V QIITFG+L AK A+RDV R   +MP ++++
Sbjct: 383  MPDIDLDIPDDKRELMLKYVHDKYGHQHVGQIITFGTLAAKQAIRDVARVFGEMP-NKIN 441

Query: 474  RLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            ++  LIP++    ++L+ A+ + S+ +E          + E +++LEGL RH STHAAGI
Sbjct: 442  QISALIPSELN--ITLERALENSSKLQEFIRTSEKNRFMFETARRLEGLPRHYSTHAAGI 499

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            V+ +  L++  P+ +D    + ++Q++  ++E+ GL+K DFLGL+ L+L+   LD + Q 
Sbjct: 500  VLSENNLTETTPV-QDGNEGMLMSQYSKNYVERVGLLKMDFLGLRNLSLMANILDQVHQL 558

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                D+  I  +D +T  L     T GIFQ ES+G+R  L  ++PD    ++A+ +LYRP
Sbjct: 559  KPDFDIENINLNDTKTLELFQRGDTSGIFQFESAGIRNVLRKVKPDRFGLVVAVNALYRP 618

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP++NI  +  RK  +E     + ++  +L ET G+++YQEQVM++A  + G SL +AD+
Sbjct: 619  GPMENIDRFVKRKEHREHYSFPNDVLSEILGETFGILVYQEQVMEVASAMGGLSLGQADL 678

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAM KK  + +++ +  FI GA + G +  +   ++  +  FA+YGFNKSHA AY+ +
Sbjct: 679  LRRAMSKKKHDVIEQMRTNFIDGALQKGYNAKLTQQVYSYIENFANYGFNKSHAVAYSKL 738

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            ++Q A++KT++P  F  A +   +    K K++ Q+  +  I++  P +N   + +    
Sbjct: 739  AFQLAYLKTYFPGPFYTALLNSVIGGEAKTKEYIQELNRLGIKVKAPDINLSQLQYAFYQ 798

Query: 833  NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             +I     +IKG+     R+++E   ++  F S++    R+  K +   ++E L+F+G L
Sbjct: 799  QQIIMGFLSIKGLRRDFIRNLIEERQSNGEFKSVDSLLRRMRDKGITEEIIEKLIFSGTL 858

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D FGY+R +L   L  + K   +  +N      ++F     T   +  ++         +
Sbjct: 859  DSFGYNRAELGDFLPELLKGIAFSGQNV-----DLFEKLMPTIKHRPDMD------LDEK 907

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
             + E+ +LG Y S HP++ Y  ++ + G K  +E     +   I     + S +  +T+K
Sbjct: 908  LDWEEELLGTYISAHPVERYANLIEQNGFKKIDEFSDEAQVTTI---VYIRSIRTIRTKK 964

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  + +   ++P  E EA  FP
Sbjct: 965  GESMAFANITDPTGESEAVIFP 986


>gi|270291308|ref|ZP_06197530.1| DNA polymerase III subunit alpha [Pediococcus acidilactici 7_4]
 gi|270280154|gb|EFA25990.1| DNA polymerase III subunit alpha [Pediococcus acidilactici 7_4]
          Length = 1112

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 320/1036 (30%), Positives = 547/1036 (52%), Gaps = 59/1036 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L V SSYSLL     +  ++         A+A+TD N ++ A+EF Q      ++P
Sbjct: 3    AFVPLHVLSSYSLLTSPTKIAELVKTAKDRGYSAMALTDNNTMYGAIEFYQACLKNDLKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G  L I +     + NQ         ++VLL     GY  L+ + S        K ++
Sbjct: 63   IVG--LTIWLDSTRGIDNQF--------ALVLLAKNINGYHNLLRISSAKMTEISAKPTL 112

Query: 130  R---ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVN 185
                +   W      + L+++       ++       +  A+  +  +++ +    L++ 
Sbjct: 113  TFNDLRAYW------KDLVVIVPPVRSEVNELLERGMANDAQALIEEYQQSIDSPDLFLG 166

Query: 186  LQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +   + +  R   +Q+ Q A    LPL +     +L+EED+ A  VL  +    V+   +
Sbjct: 167  INGQQSHVMRQTLTQMAQKAGIGCLPLPSVE---YLNEEDHFATQVLRDIDSGKVLQHPE 223

Query: 245  R-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI---LQVHAPILPRFIEKEC 300
               +   +++LK  +E V  +  L +A E   ++ R  + I   + + +P LP+F     
Sbjct: 224  LLAKGGGNNWLKPATEFVREYGQLGDA-EMLTQLDRVVAGINLEIPIVSPRLPQFATPNQ 282

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D       +L  +A+  L+  +          A+ Y+ RLD EL VI  M F+ YFLI+
Sbjct: 283  QD-SFTYLTQLCQQALTQLKENVPD--------AERYQARLDHELAVIKEMGFADYFLII 333

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +Q+A +  I  GPGRGS AGS+ AY L IT +DPL++ LLFERFLNP+R  MPD D+
Sbjct: 334  HDVVQFAHQKQILTGPGRGSAAGSLVAYLLKITSVDPLQYGLLFERFLNPERAQMPDIDL 393

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL-QMPYSQVDRLCKLI 479
            D   D+R+ V++YV ++YGH+ V QIITFG+L AK A+RDV R   +MP ++++++  LI
Sbjct: 394  DIPDDQREVVLQYVHDRYGHQHVGQIITFGTLAAKQAIRDVARVFGEMP-NKINQISALI 452

Query: 480  PNDPAHPVSLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            PN     ++L+  A  S R R+   + P    + E + +LEGL RH STHAAGIV+    
Sbjct: 453  PNKLN--ITLKQAAQTSHRLRDFIESSPKNRFMFETACRLEGLPRHFSTHAAGIVLSQDE 510

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            L + VP+ +D    + ++Q++  ++E+ GL+K DFLGL+ L+L+   L+ + +   + ++
Sbjct: 511  LVESVPV-QDGNEGMLMSQYSKNFVEQVGLLKMDFLGLRNLSLMNNILELVHRTEPQFEI 569

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I  +D +T  L     T G+FQ ES+G+R  L  + P     ++A+ +LYRPGP++NI
Sbjct: 570  EKIELNDPQTLQLFQWGDTSGVFQFESTGIRNVLRKVHPTNFGLVVAVNALYRPGPMENI 629

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+  E     + +++ +L ET G+++YQEQVM++A  + G SL +AD+LRRAM 
Sbjct: 630  DRFVKRKDHLEPYRFPNQILERVLGETYGILVYQEQVMEVASAMGGLSLGQADLLRRAMS 689

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK    +++ +  FI GA + G S+ IA  ++  +  FA+YGFNKSHA AY+ +++Q A+
Sbjct: 690  KKKHAVIEQMRTNFIQGAVQKGYSEKIAQQVYRYIENFANYGFNKSHAVAYSKLAFQLAY 749

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K HYP +F  A +   + N  K K + Q+ ++  I  + P +N     +   + +I   
Sbjct: 750  LKAHYPGDFYTALLNSVVGNDTKTKTYIQELKRLGIPTLAPDINQSSATYTYQNGQIRMG 809

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
              AIKG+     +H++ E      F +++D+  R+ ++ ++  V++ L+FAGALD FGY+
Sbjct: 810  FTAIKGLRRDFIQHLLAERERGGQFKTVDDWLRRMGNQGIDEDVIDKLIFAGALDSFGYN 869

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R +L + L  + K   +  +N      ++F     T   +  L          + + E+ 
Sbjct: 870  RAELDEYLPELLKGITFSGQNV-----DLFQKLMPTIKSRPDLP------LDEKLDREEE 918

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            +LG Y S HP++ +  ++++      ++  A   G  +     + S +  +T+KG  + +
Sbjct: 919  LLGTYVSAHPVERFAELIKQRRFVQIQQFKA---GEKVTSIVYIRSIRSIRTKKGEPMAF 975

Query: 1018 VTFSEPAKEYEANFFP 1033
               S+   E EA  FP
Sbjct: 976  AKISDQTDECEAVIFP 991


>gi|116617885|ref|YP_818256.1| DNA polymerase III catalytic subunit, DnaE type [Leuconostoc
            mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096732|gb|ABJ61883.1| DNA polymerase III catalytic subunit, DnaE type [Leuconostoc
            mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 1112

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 275/733 (37%), Positives = 423/733 (57%), Gaps = 40/733 (5%)

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L   AV+GL+ RL    ++       Y +RL  EL  I  + FS YFLIV D + +A KN
Sbjct: 283  LETIAVSGLKKRLQGHNVSLNL----YEERLQHELKTIEVLGFSDYFLIVWDIVNFAHKN 338

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ AY+L ITD+DPL+F+LLFERFLN +R+ MPD DID+   +R+E+
Sbjct: 339  HIQTGPGRGSVAGSLVAYSLQITDVDPLQFNLLFERFLNDERVQMPDIDIDWPPSKREEL 398

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSL 489
              Y+  KYG     QIITFG+L +K ALRDVGR   +P   + +L   IP       VS+
Sbjct: 399  FTYLHQKYGKRNFGQIITFGTLASKQALRDVGRVFGLPTPTLSKLSASIPEGKNGRKVSI 458

Query: 490  QAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                   + + A L D    RLL + + K+EGL ++ STHAAGIV+   PL Q +P+   
Sbjct: 459  DDALKAPQLQNA-LRDIDNGRLLLQTALKIEGLPKNYSTHAAGIVLSANPLVQTLPVQSG 517

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--VDLSLIPFDDH 606
                L +TQF    +E+ GL+K D LGL+ L +L ++L + AQ+ +    D++ I  DD 
Sbjct: 518  TEGRL-LTQFEKDPVEQLGLLKIDILGLQNLAILSQAL-YYAQKELPEGFDITKIALDDA 575

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T G+FQ ES+G++  L  ++P   E I+A+ +LYRPGP  NI  +  R++
Sbjct: 576  KTLALFAKGDTNGVFQFESAGIKNVLRKLKPATFEHIVAVNALYRPGPAQNIDKFIARRH 635

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GKE +    P +  +L  T G+I+YQEQVM +A+  +G++L EADVLR AM KK  ++M 
Sbjct: 636  GKEAVTIPDPSLKSILAPTFGIIVYQEQVMLVAESYAGFTLGEADVLRSAMSKKKVDKMQ 695

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K  E+FI GA KNG  +  A  IF  + +FA+YGFN+SHA AY+ ++++ A++K HYPV 
Sbjct: 696  KLHEQFIKGALKNGHDQEQAELIFSYIDEFANYGFNRSHAVAYSKLAFELAYLKAHYPVA 755

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  A +   +   +K++++  +A+   I ++ P VN     +   +N++   L  I+GV 
Sbjct: 756  FFTALLNANLGEQKKVQQYVSEAKIRGIVVLAPDVNKSYKFWTSIENQLQMGLNNIRGVR 815

Query: 847  TTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            T     ++E   +   F +++ F  R+  K   R VLE LV+AGALD FGY+R +L++++
Sbjct: 816  TDFVTGVLEERQNNGSFQTIQSFVRRLPDKMRKREVLEQLVYAGALDSFGYNRRELIENI 875

Query: 906  DNIQKYAQW----VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             ++ + A +    +E+ +  K+++ FA      SD              R + E+ V+G 
Sbjct: 876  ASLIEGASFGNLILEETKIKKYDD-FA-----LSD--------------RLKKEKEVIGV 915

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTF 1020
              SGHPLD Y   + +    G+ +    ++ + + ++ A+V S +Q +T+KG  + +V  
Sbjct: 916  NLSGHPLDTYVDFILE---NGFSQIGNVVQPSQVEKIIAIVDSIRQIRTKKGDDMAFVKV 972

Query: 1021 SEPAKEYEANFFP 1033
            S+   E     FP
Sbjct: 973  SDTTGEISVTIFP 985



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 10/107 (9%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  LQ+ SSYSLL+   ++  I+         AIA+ D N ++ A+++ ++    GI+P+
Sbjct: 2   YAPLQILSSYSLLKNPNTIEQIVQTAKTRGYEAIALADVNVMYGAIDWFRQTKKHGIKPL 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            G  L   M + L  T    T FP    +VLL     GYQ L+ L S
Sbjct: 62  FGLTL---MVNGLVNT---ATLFP----VVLLAENQVGYQNLMWLSS 98


>gi|288803004|ref|ZP_06408440.1| DNA polymerase III, alpha subunit [Prevotella melaninogenica D18]
 gi|288334521|gb|EFC72960.1| DNA polymerase III, alpha subunit [Prevotella melaninogenica D18]
          Length = 871

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 302/857 (35%), Positives = 452/857 (52%), Gaps = 87/857 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA----- 65
           +VHL VH++YS+L+G   +  ++DK  AD    +AITD   +F   EF+   CA      
Sbjct: 20  YVHLHVHTNYSILDGQSKVTRLVDKAIADGMKGMAITDHGVMFGIKEFAD-YCAKVNKGR 78

Query: 66  ------GIQPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
                   +PI GC++ +    M D  K  +       +   +++L     GY+ LI+LV
Sbjct: 79  KEKGEEPFKPIFGCEMYVARRTMHDKDKSMHDN-----SGYHLIVLAKNYTGYKNLIKLV 133

Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
           S  ++ D      R     L++   EGLI+ T   +G +      +  + A +    + +
Sbjct: 134 SNAWV-DGYYYRPRTDREQLEKY-HEGLIVCTACIAGEVPNKIIHDDIEGARESCEWYHR 191

Query: 177 LFGDRLYVNLQRHRGYD----RYRESQVVQ---------LAYTHELPLVATNNSLFLSEE 223
           +FGD  Y+ LQRH   D      RE+  +Q          A  + + +V TN+  F  +E
Sbjct: 192 VFGDDFYLELQRHEVKDPSLVANREAYPLQQKANKVLMKFAQEYGIKIVCTNDCHFEDKE 251

Query: 224 DYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
             EAHD L+ ++ +  +    R R +   + K R+EM  IFSD+PEA+ NT+EI  +   
Sbjct: 252 TAEAHDHLLCLSTNEDLDDPKRMRYSKQEWFKTRAEMNEIFSDIPEAMTNTLEILNKVET 311

Query: 284 ILQVHAPILPRF-------IEKECD------DIQKE-------------EENELRNKAVA 317
               H PI+P F        E+E        D+ KE             EE +     + 
Sbjct: 312 YNINHGPIMPFFPIPEDFGTEEEWKQKFSEGDLYKEFTTDENGESPLSPEEGQKVIDRLG 371

Query: 318 GLE------------VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVAD 362
           G E             +LA     K Y    + + +  + FEL+V+  M F GYFLIV D
Sbjct: 372 GYEKMYRIKFEADYLAKLAYDGAKKLYGDPLSDEVKNHIRFELHVMKTMGFPGYFLIVQD 431

Query: 363 FIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           FI  A+++ ++ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D D
Sbjct: 432 FINAARQDLDVMVGPGRGSAAGSVVAYCLGITQIDPLKYDLLFERFLNPDRVNLPDIDTD 491

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           F  D R  V+++V +KYGHE  A IIT+ ++  K +++DV R  ++P    + LCK IP 
Sbjct: 492 FDDDGRGRVLQWVMDKYGHENCAHIITYSTMATKNSIKDVARVEKLPLDVSNALCKAIPE 551

Query: 482 DPAHPVSLQ---AIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDR 537
                + +    AI      + A +++   +R  ++ ++ LEG  R    HA G +I   
Sbjct: 552 RLPDGMKMNLTNAIKCTPELQNAEVSEDIRERNTIKYAKMLEGTVRGTGIHACGFIICRN 611

Query: 538 PLSQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
           P+ + VP+      D     +PVTQ++   IE  GLIK DFLGLKTL+ L+++   + Q 
Sbjct: 612 PIDEWVPISTATDPDFPEKKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVVKQT 671

Query: 593 -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            G  +DL  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +LYR
Sbjct: 672 TGDVIDLEKIPIDDELTYQLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNALYR 731

Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           PGP+D I  +  RK+    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+D
Sbjct: 732 PGPMDYIPDFIRRKHDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESD 791

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LR+AMGKK+K  +DK K +FI    +NG    I   I+    KFA Y FNKSHA  Y+ 
Sbjct: 792 ALRKAMGKKMKAIVDKMKPKFIKQGQENGHDPQILEKIWSDWEKFASYAFNKSHATCYSW 851

Query: 772 ISYQTAWMKTHYPVEFL 788
           ++YQTA+MK HYP E++
Sbjct: 852 VAYQTAYMKAHYPAEYI 868


>gi|221635931|ref|YP_002523807.1| error-prone DNA polymerase [Thermomicrobium roseum DSM 5159]
 gi|221157507|gb|ACM06625.1| error-prone DNA polymerase [Thermomicrobium roseum DSM 5159]
          Length = 1059

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 325/1028 (31%), Positives = 514/1028 (50%), Gaps = 76/1028 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS +SLL+       ++ + AA     +A+TD + L   + F + A   GI PI
Sbjct: 5    YAELHAHSCFSLLDAPCHPEQLVQQAAALGYEHLALTDHDALHGVVRFVRAAERVGIHPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIV----LLVSTAEGYQRLIELVSRMYLLDQGK 126
            +G ++ ++   +L +  + +  + T+  ++    L   T EG       ++        +
Sbjct: 65   VGAEITMEDGSHLALLAEDERGYATLARLLSAARLGWPTPEGPGSEDTALAG----SPAR 120

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
            ++V +   WL +   +GLI+LTG   GP+ RA    +   A  R     ++FG +R +V 
Sbjct: 121  RAVALPWHWLVD-HHDGLIVLTGCRQGPLARALTEGNRADALARAHWLARVFGPERCFVE 179

Query: 186  LQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            LQ H  RG DR R +++  LA T  LPLVAT N  +L    +   DVL+ +     +   
Sbjct: 180  LQDHGERG-DRERCTELAALARTAGLPLVATGNVHYLDAAGWRLQDVLVCIREGITIETP 238

Query: 244  DRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKE 299
               R T   Y L   + M   F   P+A+ NT  IA RC   L   QV  P LP  +   
Sbjct: 239  HPARKTSAAYRLVAPASMAHRFRSFPDAVANTRRIAERCQVSLDFRQVRFPPLPHLVPPG 298

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               +Q      LR +A  G + R  Q        ++   ++L+ EL VI R+  + +FLI
Sbjct: 299  ETPMQV-----LRRQAYEGAQRRYGQ-------LSEPVVRQLEHELGVIERLGVAEFFLI 346

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
             AD     +      G GRGS A S+ AY L IT +DPL   LLFERFLN +R SMPD D
Sbjct: 347  CADLANRFR------GRGRGSAADSLVAYCLGITQVDPLAHRLLFERFLNEERPSMPDID 400

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDF  + R+  I YV   YG E  A +  + + QA++A+RD+GR L +P   +D L K  
Sbjct: 401  IDFGLEDRERAIAYVYATYGVEHAAMVCNYVTFQARSAIRDLGRVLGLPPEIIDELAKSQ 460

Query: 480  PN-DPAHPVSLQAIADDSRFREARLADPSVDR----LLEISQKLEGLYRHASTHAAGIVI 534
                 A PV  +A+A        RL+ P + R    L+ +  +LE + RH S H  G+VI
Sbjct: 461  GRLGEALPVLARALAP-------RLS-PDLRRRLAWLVRLVPQLEDIPRHLSVHVGGMVI 512

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
              RP+ +   +         V  ++ + IE+AGLIK D L ++ ++++ ++++ + Q  G
Sbjct: 513  AGRPVVEFTTVEPSRMPGRVVLGWDKRDIEEAGLIKTDVLCVRAISVVHQAIELIEQASG 572

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            +++DL  +P DD   Y LL T  T+G +Q+ES   +Q+L    P+  ED+IA V++ RPG
Sbjct: 573  LRIDLEQLPLDDPAVYRLLQTADTIGTYQVESRAQQQSLPRTHPERFEDLIAQVAIIRPG 632

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PI   +V  Y  R+ G E +  +HP ++P+L+ET GVI+YQEQV+++A  ++G +  +AD
Sbjct: 633  PIQGGMVHPYIRRRRGLEPVRYLHPKLEPILRETLGVILYQEQVLEVAMAIAGMTAGQAD 692

Query: 712  VLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
              RRAMG K+ +  M+  +  F++GA +NG+++ +A  IFE +A FA+YGF KSHAAA A
Sbjct: 693  AFRRAMGSKRSRAAMEALRGDFLAGAERNGVARPVAERIFEQIAAFAEYGFCKSHAAALA 752

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
              +Y+T W++ HYP   L A +  +       +    DA +  I ++PP V        +
Sbjct: 753  RTAYETLWLRAHYPAALLCALLNNQPMGFYAPEVLIWDALRRGIHVLPPDVLASAARSTL 812

Query: 831  GDNRIY----YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
              + ++      L A++GVG   A  I+ A +++PF    D   R    +L    +E+LV
Sbjct: 813  TGDPVHGPVRLGLTAVRGVGRAAAERIVAARSEEPFRDTADVVRRA---QLTPEQVEALV 869

Query: 887  FAGALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
              GA D      SR +LL  L         V   R  +   +   E      ++     +
Sbjct: 870  LVGAFDRLAPDRSRRELLWDLLA-------VATERPERPRLLDVSEPAVRLPELD----T 918

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
            VE + + +     +LGF    H +++Y+   R + +           G   R+A +VV +
Sbjct: 919  VEQTFLDYA----ILGFCLDRHLMELYRAQRRILRVTPAARLRTLPPGATARVAGLVVCR 974

Query: 1005 QQKKTRKG 1012
            Q   T +G
Sbjct: 975  QAPPTARG 982


>gi|213027544|ref|ZP_03341991.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 533

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/515 (46%), Positives = 343/515 (66%), Gaps = 22/515 (4%)

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 19  VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 78

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +FSD+PEALENTVEIA+RC+  +++    LP+F   +        E+ L  K+  GL
Sbjct: 79  MCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDYLVKKSKEGL 133

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 134 EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 193

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 194 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 253

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   ++ +A   + 
Sbjct: 254 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLA-KAFEAEP 312

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 313 QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 372

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +
Sbjct: 373 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 432

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E
Sbjct: 433 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 492

Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIA 699
           ++        H  + P+L+ T G+I+YQEQVMQIA
Sbjct: 493 ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIA 527


>gi|304385057|ref|ZP_07367403.1| DNA-directed DNA polymerase III alpha subunit [Pediococcus
            acidilactici DSM 20284]
 gi|304329251|gb|EFL96471.1| DNA-directed DNA polymerase III alpha subunit [Pediococcus
            acidilactici DSM 20284]
          Length = 1127

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 320/1039 (30%), Positives = 548/1039 (52%), Gaps = 59/1039 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K  +FV L V SSYSLL     +  ++         A+A+TD N ++ A+EF Q      
Sbjct: 15   KMMAFVPLHVLSSYSLLTSPTKIAELVKTAKDRGYSAMALTDNNTMYGAIEFYQACLKND 74

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI+G  L I +     + NQ         ++VLL     GY  L+ + S        K
Sbjct: 75   LKPIVG--LTIWLDSTRGIDNQF--------ALVLLAKNINGYHNLLRISSAKMTEISAK 124

Query: 127  QSVR---ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRL 182
             ++    +   W      + L+++       ++       +  A+  +  +++ +    L
Sbjct: 125  PTLTFNDLRAYW------KDLVVIVPPVRSEVNELLERGMANDAQALIEEYQQSIDSPDL 178

Query: 183  YVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ +   + +  R   +Q+ Q A    LPL +     +L+EED+ A  VL  +    V+ 
Sbjct: 179  FLGINGQQSHVMRQTLTQMAQKAGIGCLPLPSVE---YLNEEDHFATQVLRDIDSGKVLQ 235

Query: 242  QKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI---LQVHAPILPRFIE 297
              +   +   +++LK  +E V  +  L +A E   ++ R  + I   + + +P LP+F  
Sbjct: 236  HPELLAKGGGNNWLKPATEFVREYGQLGDA-EMLTQLDRVVAGINLEIPIVSPRLPQFAT 294

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                D       +L  +A+  ++  +          A+ Y+ RLD EL VI  M F+ YF
Sbjct: 295  PNQQD-SFTYLTQLCQQALTQVKENVPD--------AERYQARLDHELAVIKEMGFADYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LI+ D +Q+A +  I  GPGRGS AGS+ AY L IT +DPL++ LLFERFLNP+R  MPD
Sbjct: 346  LIIHDVVQFAHQKQILTGPGRGSAAGSLVAYLLKITSVDPLQYGLLFERFLNPERAQMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL-QMPYSQVDRLC 476
             D+D   D+R+ V++YV ++YGH+ V QIITFG+L AK A+RDV R   +MP ++++++ 
Sbjct: 406  IDLDIPDDQREVVLQYVHDRYGHQHVGQIITFGTLAAKQAIRDVARVFGEMP-NKINQIS 464

Query: 477  KLIPNDPAHPVSLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             LIPN     ++L+  A  S R R+   + P    + E + +LEGL RH STHAAGIV+ 
Sbjct: 465  ALIPNKLN--ITLKQAAQTSHRLRDFIESSPKNRFMFETACRLEGLPRHFSTHAAGIVLS 522

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
               L + VP+ +D    + ++Q++  ++E+ GL+K DFLGL+ L+L+   L+ + +   +
Sbjct: 523  QDELVESVPV-QDGNEGMLMSQYSKNFVEQVGLLKMDFLGLRNLSLMNNILELVHRTEPQ 581

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             ++  I  +D +T  L     T G+FQ ES+G+R  L  + P     ++A+ +LYRPGP+
Sbjct: 582  FEIEKIELNDPQTLQLFQRGDTSGVFQFESTGIRNVLRKVHPTNFGLVVAVNALYRPGPM 641

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            +NI  +  RK+  E     + +++ +L ET G+++YQEQVM++A  + G SL +AD+LRR
Sbjct: 642  ENIDRFVKRKDHLEPYRFPNQILERVLGETYGILVYQEQVMEVASAMGGLSLGQADLLRR 701

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AM KK    +++ +  FI GA + G S+ IA  ++  +  FA+YGFNKSHA AY+ +++Q
Sbjct: 702  AMSKKKHAVIEQMRTNFIQGAVQKGYSEKIAQQVYRYIENFANYGFNKSHAVAYSKLAFQ 761

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
             A++K HYP +F  A +   + N  K K + Q+ ++  I  + P +N     +   + +I
Sbjct: 762  LAYLKAHYPGDFYTALLNSVVGNDTKTKTYIQELKRLGIPTLAPDINQSSATYTYQNGQI 821

Query: 836  YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
                 AIKG+     +H++ E      F +++D+  R+ ++ ++  V++ L+FAGALD F
Sbjct: 822  RMGFTAIKGLRRDFIQHLLAERERGGQFKTVDDWLRRMGNQGIDEDVIDKLIFAGALDSF 881

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            GY+R +L + L  + K   +  +N      ++F     T   +  L          + + 
Sbjct: 882  GYNRAELDEYLPELLKGITFSGQNV-----DLFQKLMPTIKSRPDLP------LDEKLDR 930

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+ +LG Y S HP++ +  ++++      ++  A   G  +     + S +  +T+KG  
Sbjct: 931  EEELLGTYVSAHPVERFAELIKQRRFVPIQQFKA---GEKVTSIVYIRSFRSIRTKKGEP 987

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + +   S+   E EA  FP
Sbjct: 988  MAFAKISDQTDECEAVIFP 1006


>gi|302546169|ref|ZP_07298511.1| LOW QUALITY PROTEIN: DNA polymerase III, alpha subunit [Streptomyces
            hygroscopicus ATCC 53653]
 gi|302463787|gb|EFL26880.1| LOW QUALITY PROTEIN: DNA polymerase III, alpha subunit [Streptomyces
            himastatinicus ATCC 53653]
          Length = 880

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 262/708 (37%), Positives = 405/708 (57%), Gaps = 35/708 (4%)

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL+VADFI WAK N I VGPGRGS AGS+ +YAL ITD+DP+   L+FERFLNP+R+SMP
Sbjct: 56   FLVVADFIMWAKNNGIAVGPGRGSAAGSIVSYALGITDLDPVEHGLIFERFLNPERVSMP 115

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D DIDF + RR EVIRYV  KYG ++VAQI T+G+++AK A++D  R L  PY+  DR+ 
Sbjct: 116  DVDIDFDERRRGEVIRYVTEKYGADKVAQIGTYGTIKAKNAIKDSARVLGYPYAMGDRIT 175

Query: 477  KLIPNDP-AHPVSLQAIADDS--RFREARLA------DPSVDRLLEISQKLEGLYRHAST 527
            K +P D     + L  I D+   R+ EA         +P V ++++ ++ +EGL R    
Sbjct: 176  KAMPADVLGKGIPLSGITDEKHPRYSEAGEVRGMYENEPDVKKVIDTARGIEGLVRQMGV 235

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HAAG+++    ++  VP++        VTQ++    E  GL+K DFLGL+ LT++  ++ 
Sbjct: 236  HAAGVIMSSETVTDHVPVFSPKNDGQVVTQWDYPTCESLGLLKMDFLGLRNLTIMDDAVK 295

Query: 588  FL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             + A +GV + +  +  DD +T+ LL    TLG+FQ +   MR  L  M+PD  EDI A+
Sbjct: 296  MVRANKGVDLKMLDLSLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRMMKPDHFEDISAV 355

Query: 647  VSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIAQ 700
             +LYRPGP  +++ + Y  RKNG+++I  IHP ++  LKE    T G+I+YQEQV + AQ
Sbjct: 356  SALYRPGPMGMNSHINYALRKNGQQEITPIHPELEEPLKEVLGITYGLIVYQEQVQKAAQ 415

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +L+GYSL +AD+LRRAMGKK +E +DK+   F  G  + G S      ++++L  FA Y 
Sbjct: 416  VLAGYSLGQADLLRRAMGKKKQEVLDKEFVPFQKGCRERGYSDEAIQAVWDVLVPFAGYA 475

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+  I+++ P+
Sbjct: 476  FNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVRDDKDKSAVYLNECRRMGIKVLTPN 535

Query: 821  VNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878
            VN    +F   GD+ I + L A++ VG      I+     K  + S  D+  +V++   N
Sbjct: 536  VNESEANFTAQGDDVILFGLTAVRNVGQNVVEAIIRGRKSKGKYSSFPDYLDKVEAVVCN 595

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            +R  ESL+ AGA D  G++R  L    + +      V++       ++F    G   D  
Sbjct: 596  KRTTESLIKAGAFDEMGHTRKGLTAHYETMIDNVVAVKRKEAEGQFDLFGGMGGEGGDGE 655

Query: 939  TLE-KFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMG------IKGYEE 985
                   +E S + ++       E+ +LG Y S HPL   + +L          + G E 
Sbjct: 656  APGFGLDIEFSDIEWDKAYLLAQEREMLGLYVSDHPLFGIEHVLNDKADAAISQLTGGEH 715

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +   I    + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 716  ADGAI----VTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 759


>gi|68535846|ref|YP_250551.1| DNA polymerase III subunit alpha [Corynebacterium jeikeium K411]
 gi|260578063|ref|ZP_05845985.1| DNA polymerase III, alpha subunit [Corynebacterium jeikeium ATCC
            43734]
 gi|68263445|emb|CAI36933.1| DNA polymerase III, alpha subunit [Corynebacterium jeikeium K411]
 gi|258603803|gb|EEW17058.1| DNA polymerase III, alpha subunit [Corynebacterium jeikeium ATCC
            43734]
          Length = 1189

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 325/1024 (31%), Positives = 526/1024 (51%), Gaps = 80/1024 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+G   ++ +  ++     PA+ +TD  N++ A  F +   AAG++P
Sbjct: 5    SFVHLHNHTEYSMLDGMAKVDLLAKEVVRQGMPAVGMTDHGNMYGADAFYRAMTAAGVKP 64

Query: 70   IIGCQLDIDMQD--NLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSR 118
            IIG +  I  +   N +    GK P      +          ++   A G + L  L S 
Sbjct: 65   IIGIEAYIAPESRFNQQRVRWGK-PEQKSDDVSASGAYLHQTMIAENATGLRNLFYLSSM 123

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
                 Q  +  R+    + +  +EG+I  TG  SG +           A +    ++ ++
Sbjct: 124  ASYEGQLGKWPRMDAELIAQ-HSEGIIATTGCPSGDVQTRLRLGQFDKALEAAGMWQDIY 182

Query: 179  G-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            G D  ++ L  H G +   R R+  ++++    ELP + TN+  ++ E+   AH+V++ V
Sbjct: 183  GKDNFFLELMDH-GLEIEKRVRDD-LLEIGRKLELPPLVTNDCHYVLEQQAPAHEVMLCV 240

Query: 235  AHSTVVSQKDRPRV----------TPDHYLKNRSEMVSIFS-DLPEALENTVEIARRCSF 283
               + +   D P +             +Y+++  ++ + +  ++P+  +NT+ +A R   
Sbjct: 241  QTGSTL---DEPTLDQGGKRFAFSGTGYYVRSAEDIRAQWDKEVPKGCDNTLWVAERVQD 297

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENE-------LRNKAVAGLEVRLAQGAIAKGYHAQD 336
              +V       + E   D +   +  E       L ++ + GLE R     +       +
Sbjct: 298  YSEV-------WEEHPHDRMPIADVPEGHTPTTWLTHEVMKGLEERFPGKEVPA-----E 345

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
            Y  R  +E++VI    +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+ID
Sbjct: 346  YIDRAKYEISVIDMKGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGALVAYALTITNID 405

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            P+   LLFERFLNP+R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K 
Sbjct: 406  PMEHGLLFERFLNPERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQ 465

Query: 457  ALRDVGRAL--QMPYSQVDRLCK-LIPNDPAHPVSLQAIADDSRFREARLA--------D 505
            A++D  RA   Q  +   DR+ K L P   A  + L  I D    R    A        D
Sbjct: 466  AIKDSARAHYGQAGFQMADRITKALPPAIMAKDIPLHGITDPEHERYPEAAEVRQLIETD 525

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
            P V ++ + +  LEG+ R A  HA  +++   PL   +PM++  +    +T +     E 
Sbjct: 526  PDVAKIYKDALGLEGVIRQAGVHACAVIMSSVPLLDCIPMWKRKQDGALITGWPYPACEA 585

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GL+K DFLGL+ LT++  +L+ + A R   +DL  +   D  TY LL    TLG+FQL+
Sbjct: 586  IGLLKMDFLGLRNLTVIGDALENIKANRDFDLDLENLDTVDDPTYELLARGETLGVFQLD 645

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLID--- 679
            S+GM++ L+ M+P    DI+A ++LYRPGP  +D    Y +RKNG++ IV IHP ++   
Sbjct: 646  SAGMQKLLKRMKPTGFNDIVAALALYRPGPMGVDAHWEYADRKNGRKPIVPIHPELEEAL 705

Query: 680  -PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
              +L+ET G+I+YQEQ+M+I+Q ++ Y+  +AD  R+AMGKK  E ++K+   F SG   
Sbjct: 706  HEILEETYGLIVYQEQIMKISQKVANYTAGQADGFRKAMGKKKPEVLEKEFVTFESGMKS 765

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG S      +++ +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D 
Sbjct: 766  NGYSADAIKTLWDTILPFAGYAFNKSHAAGYGLVSFWTAYLKANYAPEYMAALLTSVADK 825

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
             +K   +  D R   I+++ P VN     F+     I + L A++ VG      I+ +  
Sbjct: 826  KDKSAIYLADCRHLGIRVLSPDVNDSRYTFQSVGKDIRFGLGAVRNVGEDVVNSIIASRE 885

Query: 859  DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
            +K  F    D+  ++D    N+RV ESL+ AGA D  G+ R  ++   ++        +K
Sbjct: 886  EKGAFTDFSDYLDKIDLVAANKRVTESLIKAGAFDSLGHPRKGMVLVHEDAVDAVTATKK 945

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVY 971
                   ++FA   G          F VE     +E       E+ +LG Y SGHPLD +
Sbjct: 946  AAAKGQFDLFAGLGGDDDAGDV---FRVEVPDQEWERKHQLALERDMLGLYVSGHPLDGF 1002

Query: 972  KPIL 975
            +  L
Sbjct: 1003 EDAL 1006


>gi|255521289|ref|ZP_05388526.1| DNA polymerase III (alpha subunit) DnaE [Listeria monocytogenes FSL
           J1-175]
          Length = 694

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 275/724 (37%), Positives = 425/724 (58%), Gaps = 38/724 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3   FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG  + + +Q  L   N  +        ++L+  +  GY  L+++ S +   ++G +   
Sbjct: 63  IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE--- 109

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
           +  SWL+   +  LI ++ G+ G I+R     + + A +      ++FG + +Y++ Q+ 
Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              +    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P   
Sbjct: 169 ---NPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250 PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           P+ Y  ++ EM   +    E  A   T E+A RC   + +   +LPRF   E  +     
Sbjct: 226 PN-YFTSQEEMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNEGQNAS--- 281

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + LR  A AGL+ R   GA        +Y++RL++EL VI  M F+ YFLIV D I+++
Sbjct: 282 -DVLRQTAFAGLKERNLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRYS 332

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           ++  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RR
Sbjct: 333 REAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           DEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     +
Sbjct: 393 DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450

Query: 488 SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           +LQ A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 451 TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511 LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
            +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570 KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
           +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630 HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726 DKQK 729
           ++++
Sbjct: 690 NEER 693


>gi|167471052|ref|ZP_02335756.1| DNA polymerase III, alpha subunit [Yersinia pestis FV-1]
          Length = 743

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 252/605 (41%), Positives = 362/605 (59%), Gaps = 25/605 (4%)

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            TFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A A + +  E   AD  
Sbjct: 15   TFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPGMTLE-KAFAAEPQLAEIYEADEE 73

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D   + PVTQF+   +E AG
Sbjct: 74   VRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVTQFDKNDVEYAG 133

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            L+KFDFLGL+TLT++  +L+ +  R  K     +D++ IP +D +++ +L    T  +FQ
Sbjct: 134  LVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLEDKKSFDMLQRSETTAVFQ 193

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----H 675
            LES GM+  ++ ++PDC ED+IALV+L+RPGP+ + +V N  +RK+G+E I        H
Sbjct: 194  LESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDIEWQH 253

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
              + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD+LRRAMGKK   EM KQ+  F  G
Sbjct: 254  ESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPAEMAKQRSVFEDG 313

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A   GI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT +
Sbjct: 314  AKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTAD 373

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIM 854
            MDN +K+     +  +  ++I+PP +N+    F V D+  I Y + AIKGVG      I+
Sbjct: 374  MDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIL 433

Query: 855  EASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            EA  +   F  L D C+RVD+KKLN+R+LE L+ +GA D  G  R  L+ SL +  K A 
Sbjct: 434  EARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSGAFDRLGPHRAALMSSLGDALKAAD 493

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-----SSVRFENEQRVLGFYFSGHPL 968
               K       ++F    G  +D     + S  N       V  + E+  LG Y +GHP+
Sbjct: 494  QHAKAEAIGQVDMF----GVLADAPEQVEQSYANVPPWQEQVVLDGERETLGLYLTGHPI 549

Query: 969  DVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
              Y K I R  G    ++   T RG       +V++ +   T++G+RIG  T  + +   
Sbjct: 550  TQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVMVTKRGNRIGICTLDDRSGRL 609

Query: 1028 EANFF 1032
            E   F
Sbjct: 610  EVMLF 614


>gi|269115187|ref|YP_003302950.1| DNA polymerase III subunit alpha [Mycoplasma hominis]
 gi|268322812|emb|CAX37547.1| DNA polymerase III, alpha chain [Mycoplasma hominis ATCC 23114]
          Length = 996

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 290/913 (31%), Positives = 483/913 (52%), Gaps = 92/913 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            ++L +++ +S LE  +++N+ + ++  +      IT+  N +S   F  +A    ++PI
Sbjct: 3   LINLHLNTIFSFLESTITINDFIQELLNNNIEYFGITEHCNFYSMPHFLNEARKHDLKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G  +++ +++NL                ++     E +  L     +M  L+ GK+   
Sbjct: 63  FGLDVNVKIENNLY-------------RFIVYCQNKESFMNL-----KMLSLNYGKKGY- 103

Query: 131 ICLSWLQEIGTEGLIMLTGGSSG---------PIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
           I L+ +++     LI +     G          I+  +F  S    E      + +F   
Sbjct: 104 IDLAEIRDYS--NLIWIEHPIFGYYKKTNNILEIENHYFAISQYDIENS--EIQNIFDKC 159

Query: 182 LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           L +N   H    +Y ++ +++           +NN +F  E  YE   V           
Sbjct: 160 LLIN---HNSILKYDDNSIIKTMSN------ISNNKIF--ESIYEEFKV----------- 197

Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                    D   KN S++        E +E T + A++  F ++     +P+F      
Sbjct: 198 ---------DIETKNNSKL-------EELIERTNDFAKKLYFEIETKGFKMPKF------ 235

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              K ++N   N+ +  L  +  +    K     +Y+QR   EL VI  + F+ YFL+V 
Sbjct: 236 ---KNDKNIASNEYLKLLLFKSIREKFDKYSWTDEYQQRFLKELKVIEDLNFADYFLVVQ 292

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D++ WAK NNI +GPGRGS AGS+  Y L IT++DP+++ L+FERFLN +R++MPD DID
Sbjct: 293 DWVNWAKNNNIKIGPGRGSAAGSLIGYLLNITEVDPIKYDLIFERFLNSNRVTMPDIDID 352

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
              ++R++VI Y+  KYGHE VA I+TF SL  K+A+RD+ R   +  + ++ + K I N
Sbjct: 353 VQDNKRNDVIEYLLKKYGHEFVANIVTFSSLGKKSAIRDILRINNIAPTLINEISKNIEN 412

Query: 482 DPAHPVSLQAIADDSRFREARLA--DPSVD----RLLEISQKLEGLYRHASTHAAGIVIG 535
           D      L    +++R  +  LA  +P+ +    R+L  + ++ G YR   THAAG+VI 
Sbjct: 413 DEQ---DLLVEYNENRNLQLSLAKLNPNDESFSIRILNQAARISGFYRQIGTHAAGLVIS 469

Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
           D+P+  + P+  +  + L  TQ +M+++E  GL+K D LGLKTLT +   +D + Q + +
Sbjct: 470 DQPVISIAPVQYNSENFLQ-TQISMEYLEDFGLVKMDILGLKTLTTISNIVDLIYQNQNL 528

Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
           K++L  I   D +T  LL++  T G+FQ+ES  M +AL  ++ +  EDI+A++SL RPGP
Sbjct: 529 KINLKDIDLTDQKTLELLSSGHTRGVFQVESPIMIKALRQVKVNNFEDIVAIISLNRPGP 588

Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
           I N+ VY  RK G E I  I+   D +L  T G+I+YQEQ+M+IAQ+++  +  EAD LR
Sbjct: 589 IKNVSVYAKRKFGLEPIPKINNEYDKILDSTYGIIVYQEQIMKIAQVVAKMTFIEADNLR 648

Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           R + KK   EM+  K  FI  A KNG  K++A NIF  + KFA YGFN+SHA +Y++I++
Sbjct: 649 RIISKKKVNEMEDIKSIFIERAMKNGYEKSLATNIFNSIEKFASYGFNRSHAVSYSIITF 708

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
           Q A++K HYP+EF  + ++    + + I KF  +A +  ++I+ P +N    +  + + +
Sbjct: 709 QMAFLKAHYPLEFYTSCISSAHGSQDTIAKFVNEASECGVEIVSPDINLSESEAIIKNRK 768

Query: 835 IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRV-DSKKLNRRVLESLVFAGALD 892
           I   L  IKG+G   A  I+E  S   P+ +  DF  ++  S+ + +  +E L+ A  L 
Sbjct: 769 IILPLTLIKGLGPEIANSIVENRSKYGPYKNFLDFLLKISSSQSIGKSTIELLIKANTLR 828

Query: 893 CFGYSRMQLLQSL 905
            F Y++  LL  +
Sbjct: 829 SFNYNQNTLLNEI 841


>gi|110801675|ref|YP_697669.1| DNA polymerase III, alpha subunit, interruption-C [Clostridium
           perfringens SM101]
 gi|110682176|gb|ABG85546.1| DNA polymerase III, alpha subunit, interruption-C [Clostridium
           perfringens SM101]
          Length = 783

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 242/601 (40%), Positives = 362/601 (60%), Gaps = 40/601 (6%)

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           FLNP+R+SMPD D DFC + R  VI YV  KYGH+ V+QIITFG++ A+A +RDVGRA+ 
Sbjct: 2   FLNPERVSMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMN 61

Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
             Y++VDR+ K IP      +  +A+  +   +     +  V  L+++S++LEGL RH+S
Sbjct: 62  YTYAEVDRIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVKELIDVSRRLEGLPRHSS 120

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
           THAAG+VI  +PL + VP+ ++  S   VTQF+M  +E+ GL+K DFLGL+TLT+++ ++
Sbjct: 121 THAAGVVIASQPLVEYVPLQKNDES--IVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAV 178

Query: 587 DFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
           D +   RGV +DL  + FDD E Y ++    T+G+FQLES+GM   ++ ++PDC+EDIIA
Sbjct: 179 DMIKYNRGVDIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIA 238

Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +SLYRPGP+  I  Y + K   + +  I P ++ +L  T GV++YQEQVM+I + L+GY
Sbjct: 239 GISLYRPGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGY 298

Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGAS------------KNGISKTIAVNIFELL 753
           S+  +D++RRAM KK  + M+++++ FI G              +NGIS   A  IF+ +
Sbjct: 299 SMGRSDLVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSM 358

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             FA Y FNKSHAAAYAVI +QTA++  +YPVEFLAA +   M N +K+ ++ + A +  
Sbjct: 359 MDFASYAFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLG 418

Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV 872
           IQ++PP +N     F V  + I + + AIK VG     +I ++  +K  F SL DFC+++
Sbjct: 419 IQVLPPDINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGKFTSLMDFCNKI 478

Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
           D   +N+R +ESL+ AG  D     R QLL   + I        K   +   ++F     
Sbjct: 479 DLSIVNKRSVESLIKAGTFDSLNVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFG---- 534

Query: 933 TFSDKITLEKFSVENSSVRFEN------------EQRVLGFYFSGHPLDVY-KPILRKMG 979
                  L++ S  N  +R+ N            E+ + G Y SGHPLD Y KP+  +  
Sbjct: 535 ------ALQEESESNLEIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTS 588

Query: 980 I 980
           I
Sbjct: 589 I 589


>gi|241896302|ref|ZP_04783598.1| DNA-directed DNA polymerase III, alpha chain [Weissella
           paramesenteroides ATCC 33313]
 gi|241870463|gb|EER74214.1| DNA-directed DNA polymerase III, alpha chain [Weissella
           paramesenteroides ATCC 33313]
          Length = 1122

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 317/974 (32%), Positives = 494/974 (50%), Gaps = 60/974 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            V LQ  +++SLL   ++   ++  +      A+A+TD N L+   +F Q A AA IQPI
Sbjct: 1   MVPLQTMTAFSLLRSPMTPQQLIKAVQDKGYQAVALTDYNVLYGMYDFYQAAQAADIQPI 60

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G   ++       +  Q    +P    ++ LV    GY  L+++ S +       Q+ +
Sbjct: 61  LGLTAEL-------IGLQSSQSYP----VIFLVENQVGYHNLLQISSAI-----NTQNEK 104

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           + L  L+   +   I+L   S G +  A    +       L+       D  +V L    
Sbjct: 105 MTLDDLKSYLSGLYIILP--SIGEL--AVLLGTEPERAMTLVKTVTALADATHVFLGVSL 160

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVT 249
                    + +LA      ++A  N L+ +  D  +  V+  +    ++S      +  
Sbjct: 161 DMREAMLQSIKELAQNTGTRIIANENVLYPNASDQFSAQVIQKLGQGEIISNVGLAQKQA 220

Query: 250 PDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              YLK  ++  + ++   L +A+ENT  IA     +L+  +  +P++   +     +  
Sbjct: 221 ATAYLKESTDWANEYNSRGLSDAVENTDWIAAHSYVVLEQSSVTVPKYETPQG----QSS 276

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + L   A  GL  RL   A+     A  Y+ RL  EL +I  + F+ YFLIV D + +A
Sbjct: 277 SDYLAELATTGLTNRLHDMAV----DATPYKARLKEELRIINELGFADYFLIVWDVLNYA 332

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K +I  GPGRGS AGS+ AY L ITD+DP+ + LLFERFLNP+R  MPD DID   +RR
Sbjct: 333 HKKSIRTGPGRGSAAGSLVAYVLWITDVDPIAYDLLFERFLNPERHQMPDIDIDIPDNRR 392

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           +E++ Y+   YGHERVAQIITF ++  +A +RDV R   +  +Q+D L K +P   A   
Sbjct: 393 EEILDYLHEHYGHERVAQIITFSTMAQRAVIRDVARVFGLNPTQIDNLSKSMPRGTA--- 449

Query: 488 SLQAIADDS-RFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
           SLQA  + S  FR A L  P   +LL + + KLEGL R+AS HAAG+V+   PL+  +P+
Sbjct: 450 SLQASYESSLPFRNALLDLPVDGQLLYQTALKLEGLPRNASLHAAGVVLSAEPLANYMPV 509

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IPF 603
                  L VTQ     +E  GL+K DFL L  L +L  ++  + +       S+  +  
Sbjct: 510 QLGDDGRL-VTQLPKGPVEALGLLKMDFLALSNLNILDIAIREIQKIPDHESFSIASVSL 568

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
           DD  T  L     T G+FQ ES GM+  L  ++PD  EDI+A  +L+RPGP+ NI  +  
Sbjct: 569 DDQATLRLFQNGLTNGVFQFESGGMKNILRQLRPDSFEDIVAANALFRPGPMQNIPHFVA 628

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
           RK+ +EK       +  +L  T G+I+YQEQVM++A+  +G+SL EAD+LRRAM KK  +
Sbjct: 629 RKHQEEKQDVPDASMAEILAPTYGIIVYQEQVMRVAERFAGFSLGEADLLRRAMSKKDHD 688

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           ++   + +FI GA      + +A  +F  +  FA YGFN+SHA AY+ +++Q A++K HY
Sbjct: 689 KIAAMQSKFIDGAVGRHHDQQVAEQVFSYIETFAQYGFNRSHAVAYSKLAFQLAYIKAHY 748

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAI 842
           P  F  A +   + + +K+  +  +A+  ++ I+ PS+N     + +     +   LA+I
Sbjct: 749 PAAFYKAVLNDSIADHKKVGIYIAEAKLSHVTILRPSLNHSWQGYSMNKQGELQMGLASI 808

Query: 843 KGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            G+        I E      +  L +F  R+ SK      LE L++AGALD FG++R  L
Sbjct: 809 SGLRRDFREALIQERQEGGQYRDLTNFIGRLPSKYRKVSQLEPLIYAGALDEFGFNRKTL 868

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE----NSSVRFENEQR 957
           L S+   Q Y   V            A E  +  + +T +   V     N  + +E+E  
Sbjct: 869 LGSM---QGYIDAVG----------LAGESISLFESLTPKMHEVAEFPLNEKLGYEHE-- 913

Query: 958 VLGFYFSGHPLDVY 971
            LG Y SGHP++ Y
Sbjct: 914 YLGVYLSGHPIEPY 927


>gi|170763890|ref|ZP_02634742.2| DNA polymerase III subunit alpha [Clostridium perfringens B str.
           ATCC 3626]
 gi|182420478|ref|ZP_02642185.2| DNA polymerase III, alpha subunit [Clostridium perfringens NCTC
           8239]
 gi|170712862|gb|EDT25044.1| DNA polymerase III subunit alpha [Clostridium perfringens B str.
           ATCC 3626]
 gi|182381484|gb|EDT78963.1| DNA polymerase III, alpha subunit [Clostridium perfringens NCTC
           8239]
          Length = 783

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 242/601 (40%), Positives = 363/601 (60%), Gaps = 40/601 (6%)

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           FLNP+R+SMPD D DFC + R  VI YV  KYGH+ V+QIITFG++ A+A +RDVGRA+ 
Sbjct: 2   FLNPERVSMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMN 61

Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
             Y++VDR+ K IP      +  +A+  +   +     +  V  L+++S++LEGL RH+S
Sbjct: 62  YTYAEVDRIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVKELIDVSRRLEGLPRHSS 120

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
           THAAG+VI  +PL + VP+ ++  S   VTQF+M  +E+ GL+K DFLGL+TLT+++ ++
Sbjct: 121 THAAGVVIASQPLVEYVPLQKNDES--IVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAV 178

Query: 587 DFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
           D +   RGV++DL  + FDD E Y ++    T+G+FQLES+GM   ++ ++PDC+EDIIA
Sbjct: 179 DMIKYNRGVEIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIA 238

Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +SLYRPGP+  I  Y + K   + +  I P ++ +L  T GV++YQEQVM+I + L+GY
Sbjct: 239 GISLYRPGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGY 298

Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGAS------------KNGISKTIAVNIFELL 753
           S+  +D++RRAM KK  + M+++++ FI G              +NGIS   A  IF+ +
Sbjct: 299 SMGRSDLVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSM 358

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             FA Y FNKSHAAAYAVI +QTA++  +YPVEFLAA +   M N +K+ ++ + A +  
Sbjct: 359 MDFASYAFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLG 418

Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRV 872
           IQ++PP +N     F V  + I + + AIK VG     +I ++  +K  F SL DFC+++
Sbjct: 419 IQVLPPDINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGRFTSLMDFCNKI 478

Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
           D   +N+R +ESL+ AG  D     R QLL   + I        K   +   ++F     
Sbjct: 479 DLSIVNKRSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFG---- 534

Query: 933 TFSDKITLEKFSVENSSVRFEN------------EQRVLGFYFSGHPLDVY-KPILRKMG 979
                  L++ S  N  +R+ N            E+ + G Y SGHPLD Y KP+  +  
Sbjct: 535 ------ALQEESESNLEIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTS 588

Query: 980 I 980
           I
Sbjct: 589 I 589


>gi|170764215|ref|ZP_02638356.2| DNA polymerase III, alpha subunit [Clostridium perfringens CPE str.
           F4969]
 gi|170715700|gb|EDT27882.1| DNA polymerase III, alpha subunit [Clostridium perfringens CPE str.
           F4969]
          Length = 783

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 242/601 (40%), Positives = 362/601 (60%), Gaps = 40/601 (6%)

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           FLNP+R+SMPD D DFC + R  VI YV  KYGH+ V+QIITFG++ A+A +RDVGRA+ 
Sbjct: 2   FLNPERVSMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMN 61

Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
             Y++VDR+ K IP      +  +A+  +   +     +  V  L+++S++LEGL RH+S
Sbjct: 62  YTYAEVDRIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVKELIDVSRRLEGLPRHSS 120

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
           THAAG+VI  +PL + VP+ ++  S   VTQF+M  +E+ GL+K DFLGL+TLT+++ ++
Sbjct: 121 THAAGVVIASQPLVEYVPLQKNDES--IVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAV 178

Query: 587 DFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
           D +   RGV +DL  + FDD E Y ++    T+G+FQLES+GM   ++ ++PDC+EDIIA
Sbjct: 179 DMIKYNRGVDIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIA 238

Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +SLYRPGP+  I  Y + K   + +  I P ++ +L  T GV++YQEQVM+I + L+GY
Sbjct: 239 GISLYRPGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGY 298

Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGAS------------KNGISKTIAVNIFELL 753
           S+  +D++RRAM KK  + M+++++ FI G              +NGIS   A  IF+ +
Sbjct: 299 SMGRSDLVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSM 358

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             FA Y FNKSHAAAYAVI +QTA++  +YPVEFLAA +   M N +K+ ++ + A +  
Sbjct: 359 MDFASYAFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLG 418

Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRV 872
           IQ++PP +N     F V  + I + + AIK VG     +I ++  +K  F SL DFC+++
Sbjct: 419 IQVLPPDINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGRFTSLMDFCNKI 478

Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
           D   +N+R +ESL+ AG  D     R QLL   + I        K   +   ++F     
Sbjct: 479 DLSIVNKRSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFG---- 534

Query: 933 TFSDKITLEKFSVENSSVRFEN------------EQRVLGFYFSGHPLDVY-KPILRKMG 979
                  L++ S  N  +R+ N            E+ + G Y SGHPLD Y KP+  +  
Sbjct: 535 ------ALQEESESNLEIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTS 588

Query: 980 I 980
           I
Sbjct: 589 I 589


>gi|302552433|ref|ZP_07304775.1| LOW QUALITY PROTEIN: DNA polymerase III subunit alpha [Streptomyces
            viridochromogenes DSM 40736]
 gi|302470051|gb|EFL33144.1| LOW QUALITY PROTEIN: DNA polymerase III subunit alpha [Streptomyces
            viridochromogenes DSM 40736]
          Length = 914

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 257/736 (34%), Positives = 403/736 (54%), Gaps = 41/736 (5%)

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +R + E+ VI  M FS YFL+VAD  ++A+ N IP+GPGRGS  GS+ AYA  IT++ PL
Sbjct: 56   ERFETEMAVIGPMGFSSYFLVVADICRYARDNGIPLGPGRGSATGSLVAYATRITELCPL 115

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               LLFERFLNP+R++ PD D+DF   +RD ++RYV +KYG E  A + TFG ++AK A+
Sbjct: 116  EHGLLFERFLNPERINPPDVDLDFDDRQRDRMVRYVIDKYGDEYTALVNTFGKIKAKNAI 175

Query: 459  RDVGRALQMPYSQVDRLCKLIP---NDPAHPVSLQAIADDSRFREAR------LADPSVD 509
            +D  R L  PY+  +R+ K +P   N  + P+     A  +R+ EA        ++P V 
Sbjct: 176  KDSARILGYPYAHGERITKALPPDQNGKSAPLDALFDASHARYPEAGEIRQMYGSEPDVA 235

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            R+++ ++ +EGL R    HAA +++    L+  +P++        +T F+    E  GL+
Sbjct: 236  RVIDTARGVEGLTRGTGVHAAAVILSKTRLTDRIPLHLRASDGARITGFDYPSCEAMGLV 295

Query: 570  KFDFLGLKTLTLLQKSLDFLAQ-RGVKV-----------------DLSLIPFDDHETYHL 611
            K DFLGL+ L ++ ++++ + + RGV++                    +IP DD  TY L
Sbjct: 296  KMDFLGLRNLGVIDQAIENVRENRGVRLATVDPGDGAGGDPGGDPGTVVIPLDDARTYRL 355

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKE 669
            L    TLG+FQL+  GMR  L+ M P   EDI A  +LYRPGP+  +    Y  R+NGK+
Sbjct: 356  LAEANTLGVFQLDGGGMRALLKLMAPTRFEDIAAANALYRPGPMAANAHTNYALRQNGKQ 415

Query: 670  KIVSIHP----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
                IHP     ++P+L  T  +++YQEQ+M +A+ L+GY+L  AD+LRRAMGKK  E +
Sbjct: 416  AATPIHPELREALEPILGPTHHLLVYQEQIMAVARQLAGYTLGGADMLRRAMGKKKPEVL 475

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              + E+F  G + NG S      +++++  F+ Y FNKSH A Y ++SY TA++K +YP 
Sbjct: 476  AAEWEKFHGGMTANGYSDEAVRALWDVMLPFSGYAFNKSHTAGYGLVSYWTAYLKANYPA 535

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            E++AA +T   D+ +K   +  DAR   ++++PP +N    +F    + + + L +++ V
Sbjct: 536  EYMAALLTSVGDDKDKAALYLADARANGVRVLPPDINESVAEFTAVGDDVRFGLRSVRNV 595

Query: 846  GTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            G      +++A      F S  DF  +     LN+R +ESL+ AGA D  G+SR  L   
Sbjct: 596  GDGVIEAVIDARRRGGRFTSFSDFLHKAGLPALNKRAVESLIKAGAFDSLGHSRKGLTAV 655

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFSVENSSVR---FENEQRV 958
             +        V+K  +   +++FA   G  +D      L+    E    R      E+ +
Sbjct: 656  HEAAVDAVIPVKKAASFGQDDLFAGLGGAEADAAPAFGLDFAVAEEEWPRRQLLATEREM 715

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            LG Y S HPLD  + IL         E +A+ R    +RL+ ++   Q+K T++G+    
Sbjct: 716  LGLYVSAHPLDGAERILAAARDCSVAELLASGRTSGEVRLSGLITGVQRKVTKQGNAWAV 775

Query: 1018 VTFSEPAKEYEANFFP 1033
            V  ++     E  FFP
Sbjct: 776  VQLTDRDAGIEVLFFP 791


>gi|251782507|ref|YP_002996809.1| DNA polymerase III DnaE [Streptococcus dysgalactiae subsp.
            equisimilis GGS_124]
 gi|242391136|dbj|BAH81595.1| DNA polymerase III alpha subunit [Streptococcus dysgalactiae subsp.
            equisimilis GGS_124]
 gi|323127393|gb|ADX24690.1| DNA polymerase III DnaE [Streptococcus dysgalactiae subsp.
            equisimilis ATCC 12394]
          Length = 1036

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 322/1041 (30%), Positives = 519/1041 (49%), Gaps = 132/1041 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L++  ++        I I D +NL+ A  F +     G++P+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLSHYFEQAKQLGYQTIGIMDRDNLYGAYHFIRGCQKHGLRPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++++  Q+   + N             L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEVVYQEQQVLLN-------------LIAKNTQGYHQLLKIST-------AKMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EGL ++                            +++ D L V    + 
Sbjct: 102  LQMDYLCQ-HLEGLAVIIPN-------------------------RVWTDTLAVPFDYYI 135

Query: 191  GYDRYRESQVVQLAYTH---ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            G D+Y +       ++H   +   +      + +++D E   +L A+  +  +S  + P 
Sbjct: 136  GVDQYTD-------FSHMDSKKQFIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPV 186

Query: 248  VTPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            V  D  L +  ++ + + +  P+AL+N  ++     +        LPRF      +  K 
Sbjct: 187  VESDQELGDCQQLTAYYQAHCPQALQNLEDLVSGIHYDFDTDLK-LPRF------NRDKS 239

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + EL+    AGL        +AKG   + Y+ RL  EL VI+ M F  YFLIV D +++
Sbjct: 240  AKQELQELTQAGL--------VAKGLWQEPYQTRLAHELTVISDMGFDDYFLIVWDLLRF 291

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             +     +G GRGS AGS+ AYAL IT IDP+R  LLFERFLN +R SMPD DID     
Sbjct: 292  GRSKGYYMGMGRGSAAGSLVAYALDITGIDPIRHDLLFERFLNKERYSMPDIDIDLPDIY 351

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAH 485
            R E +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I   D   
Sbjct: 352  RSEFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGFKDSLA 411

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             V  + I+    FR+   +     +   I+Q++EG  R  S HAAGIV+ D  L+  +P+
Sbjct: 412  TVYEKNIS----FRQTINSRVEFQKAFTIAQRIEGNPRQTSIHAAGIVMSDDNLTNHIPL 467

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
                  ++ VTQ++   +E  GL+K DFLGL+ LT +QK  + +A+  G  +D++ I  +
Sbjct: 468  --KAGDEMMVTQYDANAVEANGLLKMDFLGLRNLTFVQKMQEKVAKEYGQHIDIAAIDLE 525

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T  L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D  V +  R
Sbjct: 526  DPKTLALFAKGDTRGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTVNFIKR 585

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            + G+EKI  I P+I P+L+ T G+++YQEQVMQIAQ  +G++L +AD+LRRAM KK   E
Sbjct: 586  RQGQEKIDLIDPVIAPILESTYGIMLYQEQVMQIAQAYAGFTLGKADLLRRAMSKKNLLE 645

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M K +E F++GA + G S+  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP
Sbjct: 646  MQKMEEAFVAGAKQLGRSEETAKLLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYP 705

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIK 843
              F    M     +      +  DA + N Q+   ++N+ P  D K+  N IY  L  IK
Sbjct: 706  AVFYDIMMNYSSSD------YITDALESNFQVAQVTINSIPYTD-KIESNSIYMGLKNIK 758

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            G+    A  I+E    +PF S+EDF +RV  K      LE L+  G  DCF  +R ++L+
Sbjct: 759  GLPRDFAYWIIE---QRPFSSVEDFLTRVPEKYQKIAFLEPLIKIGLFDCFDPNRKKILE 815

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +L+ +  +         N+  ++FA      G   D  T EK+S          EQ ++G
Sbjct: 816  NLEGLLVF--------VNELGSLFADSSFNWGDTEDYSTTEKYSF---------EQELIG 858

Query: 961  FYFSGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
               S HPL          + PI + +  K   E+   ++ ++IR      S QQ      
Sbjct: 859  VGMSKHPLIDIAEKSTQAFTPISQLVKDK---EATILVQVDSIRTIRTKTSGQQ------ 909

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + +++ ++  K+ +   FP
Sbjct: 910  --MAFLSVNDTKKKLDVTLFP 928


>gi|322411903|gb|EFY02811.1| DNA polymerase III DnaE [Streptococcus dysgalactiae subsp.
            dysgalactiae ATCC 27957]
          Length = 1036

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 321/1041 (30%), Positives = 523/1041 (50%), Gaps = 132/1041 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L++  ++        I I D +NL+ A  F +     G++P+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLSHYFEQAKQLGYQTIGIMDRDNLYGAYHFIRGCQKHGLRPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++++  Q+   + N             L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEVVYQEQQVLLN-------------LIAKNTQGYHQLLKIST-------AKMSGK 101

Query: 131  ICLSWLQEIGTEGLIML------TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            + + +L +   EGL ++      T   S P D  ++ +  Q  +     F  +   R ++
Sbjct: 102  LHMDYLCQ-HLEGLAVIIPNRVWTDTLSFPFD--YYISVDQYTD-----FSSMDSKRQFI 153

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             L+  R                            + +++D E   +L A+  +  +S  +
Sbjct: 154  PLRTAR----------------------------YFAQDDMETLHMLHAIRDN--LSLVE 183

Query: 245  RPRVTPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             P V  D  L +  ++ + + +  P+AL+N  ++     +        LPRF      + 
Sbjct: 184  TPVVESDQELGDCQQLTAFYQAHCPQALQNLEDLVSGIHYDFDTDLK-LPRF------NR 236

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             K  + EL+    AGL        +AKG   + Y+ RL  EL VI+ M F  YFLIV D 
Sbjct: 237  DKSAKQELQELTQAGL--------VAKGLWHEPYQTRLAHELTVISDMGFDDYFLIVWDL 288

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++ +     +G GRGS AGS+ AYAL IT IDP+R  LLFERFLN +R SMPD DID  
Sbjct: 289  LRFGRSKGYYMGMGRGSAAGSLVAYALNITGIDPVRHDLLFERFLNKERYSMPDIDIDLP 348

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-ND 482
               R E +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I   D
Sbjct: 349  DIYRSEFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGFKD 408

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                V  + I+    FR+   +     +   I+Q++EG  R  S HAAGIV+ D  L+  
Sbjct: 409  SLATVYEKNIS----FRQTINSRVEFQKAFAIAQRIEGNPRQTSIHAAGIVMSDDNLTNH 464

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
            +P+      ++ VTQ++   +E  GL+K DFLGL+ LT +QK  + +A+  G ++D++ I
Sbjct: 465  IPL--KAGDEMMVTQYDANAVEANGLLKMDFLGLRNLTFVQKMQEKVAKEYGQQIDIAAI 522

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
              +D +T  L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D  V +
Sbjct: 523  DLEDSQTLALFAKGDTRGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTVNF 582

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R+ G+EKI  I P+I P+L+ T G+++YQEQVMQIAQ  +G++L +AD+LRRAM KK 
Sbjct: 583  IKRRQGQEKIDLIDPVIAPILESTYGIMLYQEQVMQIAQTYAGFTLGKADLLRRAMSKKN 642

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              EM K +E F++GA + G S+  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K 
Sbjct: 643  LLEMQKMEEAFVAGAKQLGRSEETAKLLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKA 702

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLA 840
            HYP  F    M     +      +  DA + N Q+   ++N+ P  D K+  N IY  L 
Sbjct: 703  HYPAVFYDIMMNYSSSD------YITDALESNFQVAQVTINSIPYTD-KIEANSIYMGLK 755

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             IKG+    A  I+E    + F S+EDF +RV  K      LE L+  G  DCF  +R +
Sbjct: 756  NIKGLPRDFAYWIIE---QRSFSSVEDFLTRVPEKYQKIAFLEPLIKIGLFDCFDPNRKK 812

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +L++L+ +  +         N+  ++FA     + D    E +S   ++ ++  EQ ++G
Sbjct: 813  ILENLEGLIVF--------VNELGSLFADSSFNWVDT---EDYS---TTEKYSFEQELIG 858

Query: 961  FYFSGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
               S HPL          + PI + +  K   E+   ++ ++IR     +S QQ      
Sbjct: 859  VGMSKHPLIDIAEKSTQAFTPISQLVKDK---EATILVQVDSIRTIRTKISGQQ------ 909

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + +++ ++  K+ + N FP
Sbjct: 910  --MAFLSVNDTKKKLDVNLFP 928


>gi|313884090|ref|ZP_07817856.1| DNA polymerase III, alpha subunit [Eremococcus coleocola
            ACS-139-V-Col8]
 gi|312620537|gb|EFR31960.1| DNA polymerase III, alpha subunit [Eremococcus coleocola
            ACS-139-V-Col8]
          Length = 1113

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 316/1027 (30%), Positives = 527/1027 (51%), Gaps = 52/1027 (5%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75
            V S+YS  +  + + + + +  A    A+ + D  NLF+A EF Q +   GI+ ++G  +
Sbjct: 4    VKSTYSFNQATILVKDYVQQAKAMGYQAVGLADQGNLFAAYEFYQASQVFGIKAVLGLTV 63

Query: 76   DI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +  + D+ K            P+++  +   +GYQ LI+L SR+ +  Q + S ++ L+
Sbjct: 64   SLPGLIDDQK----------AWPALIYAIDQ-KGYQGLIKL-SRL-MSHQKEYSNQLYLN 110

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYD 193
             L +     L+ ++ G    +D     +  + A+  L   +++FG D++Y+  Q    ++
Sbjct: 111  CLSDYKGH-LVYISRGHDSELDSLVLHDQIKEAQDLLKQLREIFGEDKVYLGHQI-LPFN 168

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT--PD 251
            +     +   A + +L  V+T     L +ED  A  +L            D        +
Sbjct: 169  QIVTRHLSDFAKSMDLKQVSTQPVRLLQQEDVMALTILKRRVDRAAYEPLDLTNFGQRSE 228

Query: 252  HYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              L +R ++  ++    L E + N+ ++  R  F LQ    +LP F        Q E   
Sbjct: 229  KVLLSRKDLEDLYQHYGLVEIISNSDQLMTRLEFKLQEGKDLLPVFDSGSLLTSQ-EYLK 287

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            +L  +A+         G  AK      Y++RL +EL+VI +M +  YFLIVAD + + ++
Sbjct: 288  QLVTQALNQF------GLAAKN----TYQERLAYELSVIHQMGYDDYFLIVADIVSYCRQ 337

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            ++I +G GRGS  GS+  Y L ++ IDPL++ L+FERFLNP+R +MPD D+D     RD+
Sbjct: 338  HHIQLGAGRGSAPGSLVTYLLGVSTIDPLKYDLIFERFLNPERQTMPDIDLDIPNSHRDQ 397

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI YV+ KYG+E+VAQI TF    AK+A+++V R +    SQ+    KLIP DP   + L
Sbjct: 398  VIAYVRQKYGYEQVAQIATFNRFGAKSAIQEVLRQVGQD-SQLKTWSKLIPTDPNRKIDL 456

Query: 490  -QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             QA  ++  FR    A P+   + +  Q LEGL    S HA G+VI D P+  ++P+  +
Sbjct: 457  GQAYQENKSFRHLVDASPTNQAIFQAGQALEGLISEHSIHAGGLVITDFPIDSMIPVLEE 516

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
             +S   +TQF+   +E  GL+K D L LK LTLL + L  +  +    ++  I  +DHET
Sbjct: 517  GQS--LITQFDKDGVENLGLLKIDLLALKNLTLLDQILQEVKVKDQAFEIEDIDLNDHET 574

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T G+FQ ES G+R  L  +QP   EDI+A+ +L+RPGP+  I  Y  RK+G+
Sbjct: 575  LQLFRRAQTRGVFQFESPGIRNVLSQLQPTSFEDIVAVNALFRPGPMGQIQTYIKRKHGQ 634

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             +     P ++ +LK+T G+IIYQEQVMQI   ++G+++ +AD+LRRAM KK  E M  Q
Sbjct: 635  YQATYPVPELEGILKDTYGIIIYQEQVMQILVSMAGFTMGQADLLRRAMSKKDHEVMQAQ 694

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K  F++GA + G  +  A  +++ +A+FA+YGFN+SHA  Y+ +++Q A++K HY   F 
Sbjct: 695  KVNFLTGALEKGYEEKTASQVYDAIAEFANYGFNRSHAVVYSKLAFQLAYLKVHYSQAFF 754

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +  +     +++ + ++ +   I+I+   VN   +      N +      +KG+   
Sbjct: 755  LGQLKFD---PTQMQAYLEEIKAAGIKILTLDVNKSQMGVSANGNDLRLGFQMVKGIRPD 811

Query: 849  TARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              R I++      P+    DF  R+  K L    LE L+  GA D  GY+R  LL +L+ 
Sbjct: 812  LMREIIDNRQLMGPYQDFFDFLRRLPDKYLQVTPLEILIKVGAFDSLGYNRATLLTNLEK 871

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +  ++   N      ++F       + KI  E  +  N       E+  LGFY SGHP
Sbjct: 872  VIESVRFSGLNM-----DLFEE----MAPKI--ETVAELNPLQLIHQEKEHLGFYLSGHP 920

Query: 968  LDVYKPILR-KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            LD Y+  L  ++ +    +       +  RL  ++   +  +TR+G  + +    + + +
Sbjct: 921  LDFYRDNLNAEINLMNISQIKKEEPKSPFRLLGIISRIKLTQTRQGQTMAFAQIEDESGK 980

Query: 1027 YEANFFP 1033
             +   FP
Sbjct: 981  LDQVLFP 987


>gi|37784574|gb|AAP47638.1| DnaE precursor [Aphanothece halophytica]
          Length = 712

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/600 (40%), Positives = 374/600 (62%), Gaps = 40/600 (6%)

Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
           DR   +++V+++   ++ +VATN+S F+S  D EAHD L+ +  + ++++  R R +   
Sbjct: 10  DRIVNTEIVKISQELDIKIVATNDSHFISCNDVEAHDALICIQTNKLITEDKRLRYSGTE 69

Query: 253 YLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
           YLK+  EM  +F D      +  A+ NTVE+A +      +  P +P +      +    
Sbjct: 70  YLKSADEMRQLFRDHLSDDVIESAIANTVEVAEKVKPYNILGEPRIPDYPVPSGYNA--- 126

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +  L      GL  RL  G  ++   ++ Y+ RL+ EL ++    FS YFL+V D+I++
Sbjct: 127 -DTYLEELTWNGLMERL--GCRSRSEISETYKTRLERELTIMQERGFSTYFLVVWDYIKY 183

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A+ +NIPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D DFC +R
Sbjct: 184 ARDHNIPVGPGRGSAAGSLVAYALKITNIDPVHHGLLFERFLNPERKSMPDIDTDFCIER 243

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           RDEVI YV  +YG ++VAQIITF  + +KA L+DV R L +PYS+ DRL K+IP     P
Sbjct: 244 RDEVIEYVTRRYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYSESDRLAKMIPVARGKP 303

Query: 487 VSL-QAIADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
             L + I+DD+    F++   +D  V R ++++ ++EG  +    HAAG+VI   PL ++
Sbjct: 304 AELTKMISDDTPEPEFKKLYDSDEKVRRWVDMAIRIEGTNKTXGVHAAGVVISKEPLDEV 363

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            P+ ++    + +TQ+  +  E  GL K  FLGLK LT  Q++ D L + +G KV L  +
Sbjct: 364 XPLQKNNDGAV-ITQYXXEDXEAXGLXKMXFLGLKNLTTFQRTADLLRKIKGXKVGLDXL 422

Query: 602 PFDD--------------------HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
           P D+                     +TY+L+      G+FQLESSGM + ++ ++P  IE
Sbjct: 423 PLDEIHSRKILAKGEIKNTKPPDIQKTYNLIEKGWLEGVFQLESSGMLKVVQDLKPSSIE 482

Query: 642 DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
           D+ ++++LYRPGP+D  ++  + +RK+G+E+I+  HP+++P+L ET  V++YQEQ+M+IA
Sbjct: 483 DLSSILALYRPGPLDAGLIPKFIDRKHGREEIIYEHPILEPILDETYAVMVYQEQIMKIA 542

Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
           Q ++GYSL +AD+LRRAMGKK  +EM K +E FI GA+KNG+ +  A ++F+ + KFA+Y
Sbjct: 543 QDMAGYSLGQADLLRRAMGKKKVKEMQKHREIFIDGATKNGVKQETAEHLFDQMIKFAEY 602


>gi|162447106|ref|YP_001620238.1| DNA polymerase III subunit alpha [Acholeplasma laidlawii PG-8A]
 gi|161985213|gb|ABX80862.1| DNA polymerase III alpha subunit [Acholeplasma laidlawii PG-8A]
          Length = 982

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 335/1023 (32%), Positives = 529/1023 (51%), Gaps = 115/1023 (11%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL---FSALEFSQK---ACAAGI 67
            L   SSYS+L+  L L  I      +    +AITD NNL   + AL  S+K       G 
Sbjct: 8    LYTQSSYSILKSTLHLETIFKHAKQENLDFVAITDDNNLHGLYKALVLSKKYQIPLILGF 67

Query: 68   QP---IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            Q    ++G  LD+                      ++     E  + LIEL S       
Sbjct: 68   QKTFKVLGYDLDL----------------------LIYAQNDEALKSLIELNSLT----- 100

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RL 182
              ++  I      ++  + +I+L      P  ++F +   +++E+       L       
Sbjct: 101  -ARTPDIPFESCVQLLNKLIIVL------PSTQSFIYQHYEMSERIYEVISSLHKSLKNF 153

Query: 183  YVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ L     ++  + + +++ +A   +L  + T    +  EE+   +D++  +  S   S
Sbjct: 154  YLGLGNATDFEVDKITPILKKIALNEDLKYLPTYQQSYEDEENKTTYDIVNTIKDSQFKS 213

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                  +    +L +++E+V  +       +N   +  R ++    +   LP F  K  D
Sbjct: 214  ------LNVSMHLLSKNELVKKYEQEKNIFKNVDAVFGRVNYTYLDNTQSLPVFPTK--D 265

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            ++  E    L   A  GLE RL    + K   + DY QRL+ EL VI +M +  YFLIV 
Sbjct: 266  NV--ESHIYLYALAHKGLEKRLENSGVRK---STDYIQRLNEELEVIHQMGYDDYFLIVY 320

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF+++AK N+I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLN DR SMPD D+D
Sbjct: 321  DFVRFAKTNDILVGPGRGSAAGSLVAYCLGITEVDPIQYDLLFERFLNIDRKSMPDIDLD 380

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F   +RD VI YV+ KYG   V  + TF +L  K ++RD+ R  QM  SQ +R+  +I  
Sbjct: 381  FPDVKRDLVIDYVKEKYGLNHVVTMTTFTNLTTKTSMRDIAR--QMNLSQ-ERINAIIA- 436

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
              +H    + I D+S  REA+       +L++++  +EG+ R   TH AGI++  + L+ 
Sbjct: 437  --SHT---KGILDESD-REAQ-------KLVKVASTIEGIPRQTGTHPAGIILSKQDLTT 483

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVP+    + D+  +Q     +E  G +K DFLGLK LT+++   D L     K+ LS +
Sbjct: 484  LVPLMNGPK-DIYQSQLEASDLESLGFLKIDFLGLKNLTMIE---DILKLEQNKLKLSDM 539

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD +T+ LL+     G+FQLES GMR  +  ++P   EDI+AL++L+RPGP+  I  Y
Sbjct: 540  PLDDKKTFELLSNADVEGVFQLESQGMRNVIRKLRPSHFEDIVALLALFRPGPMQFIDDY 599

Query: 662  NNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
              R++G   EK+ S    ID +LK T G+I+YQEQ+M+I Q+ +GY LSEAD++RRA+ K
Sbjct: 600  IKRRHGDTYEKLDSD---IDEILKPTYGIIVYQEQIMKIFQVYAGYKLSEADIIRRAISK 656

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K ++ +D++K RFI  + +       A  I+  + KFADYGFN+SH+ AYA I+Y  A++
Sbjct: 657  KNRDMIDREKARFIEKSVRLNRDAETAEKIYNHIEKFADYGFNRSHSVAYAFIAYYMAYL 716

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            KTHY   F++  M+    N   +K+   DA+   + + PP++N   +DF    + I   L
Sbjct: 717  KTHYYASFISVLMSQNTSNTAYLKELVLDAQNKGLVVYPPNINLSKLDFIPYKSGILAPL 776

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
              IKG+G TTA+ I+E    +PFDS + F  +V  K LN + +E L+ A ALD FG +  
Sbjct: 777  TMIKGIGLTTAKKIVEL---QPFDSYDHFKEKV-FKVLNEKSIEILIHANALDVFGLNHK 832

Query: 900  QLL-QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
            +LL Q+  N   + Q+++  +  + E +       F+   TL+           E E  V
Sbjct: 833  ELLDQNNLNQTGFEQFLDDYKKTRLEEL------PFN---TLK-----------EKEIEV 872

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LGF       +V   +     +K       +++  +IR   M+ S +   T+KG  + ++
Sbjct: 873  LGFNLKYLKDEVLIRLNETHKLKP-----LSLKEQSIRTIGMIESVKIITTKKGDEMAFI 927

Query: 1019 TFS 1021
            TFS
Sbjct: 928  TFS 930


>gi|302327802|gb|ADL27003.1| DNA polymerase III, alpha subunit [Fibrobacter succinogenes subsp.
            succinogenes S85]
          Length = 1285

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 262/670 (39%), Positives = 377/670 (56%), Gaps = 27/670 (4%)

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
            H  +  +R+  ELN I  M  +GY LIV DFI W++++ IPVGPGRGS AGS+  Y + I
Sbjct: 422  HETNVGKRMYKELNCIRNMNVAGYLLIVWDFINWSREHGIPVGPGRGSAAGSLVTYIIGI 481

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            TDIDPL F LLFERFLNP+R+SMPD D DF    R  VI+YV +KYG E V QIIT+G L
Sbjct: 482  TDIDPLTFDLLFERFLNPERVSMPDIDTDFADRDRGRVIQYVTDKYGKECVGQIITYGML 541

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR----FREARLADP-- 506
            ++KA + DV R L +P ++   + KL P    +    QA     +      +    +P  
Sbjct: 542  KSKAVITDVARVLGIPPAEAKAITKLFPQRTLNFSLKQAWTGKDKKGNNLEDGYSPEPLQ 601

Query: 507  -------SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
                   S   L +++++LE L R    HA G+VI   P+  L P+YR    D PV  ++
Sbjct: 602  AMIGSRASYQNLWDVAKRLEDLPRQTGVHACGVVITPTPIYNLAPLYRAAPEDTPVVMYD 661

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTL 618
              + E  GL+K DFLGL  L+++Q ++  + Q R +K+ ++ IP DD  T+ LL    T 
Sbjct: 662  KHYAEDIGLLKMDFLGLINLSIIQDTVKMVEQNRNIKLVMNKIPIDDKATFELLGKGLTT 721

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
             +FQ ES GM++ L  ++P  I D+IA+ +LYRPGPID I  +  RKNGKE+I   HP +
Sbjct: 722  TVFQFESPGMQKYLRELKPTRIFDLIAMNALYRPGPIDQIPHFIARKNGKEEIDCYHPDL 781

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            + +L ET GVI+YQEQVM++AQ+L GYSL  AD +RR M KK+ E+M K +  F      
Sbjct: 782  EQVLGETYGVIVYQEQVMKLAQILGGYSLGGADNIRRIMAKKMPEKMAKLEPEFFQKCLD 841

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             G  K +   +++ +  F  Y FNKSHAAAYA ++YQTA++KTHY  E++AASMT +M  
Sbjct: 842  KGYDKAMIQKVWDAVLPFCGYAFNKSHAAAYAYVAYQTAYLKTHYGPEYMAASMTSKMGK 901

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EA 856
             E       + ++  I ++ P++NT    F      +I Y LA I+ VG      ++ E 
Sbjct: 902  TEDTVTIILECKRLGIPVLSPNINTSLGVFSANTKGQILYGLAGIRNVGIAVVEDVVAER 961

Query: 857  SADKPFDSLEDFCSRVDSKK---------LNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                 +  + DFC RV   +         LN++VLE L+ AGALD    SR     ++D 
Sbjct: 962  ERRGIYKDIFDFCKRVTEYQAAQPEKRPPLNKKVLECLIMAGALDDLPGSRAVQCATVDR 1021

Query: 908  IQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              + A   ++++     ++F         +    LE+     +      E+ VLG + SG
Sbjct: 1022 ALEVAMRSQEDKAKGQVSLFDLGGPAAMPNTAEVLEEAEEWTAMEMLNKERSVLGLFLSG 1081

Query: 966  HPLDVYKPIL 975
            HPLD ++P L
Sbjct: 1082 HPLDEFRPEL 1091



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 147/303 (48%), Gaps = 25/303 (8%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL-------EFSQKA 62
           +FVHLQ HS +S+L+ +  L++IL   AA+  PA+A+TD   +F  L       E ++K 
Sbjct: 2   AFVHLQTHSEFSILQASARLDDILAAAAAENAPAVALTDHGAMFGILEIQTRGKELNKKR 61

Query: 63  CAAGIQP---IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
              G+ P   + GC + +D       +   K P  T   + LLV   +GY  L+ +VS  
Sbjct: 62  KEQGLPPVKTVYGCHIYVDTP-----SASQKDP-TTFERLTLLVENEKGYYNLLRIVS-- 113

Query: 120 YLLDQGKQSVRICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
           Y  + G++   I    L+ I    EG+I + G       +        +A + +    ++
Sbjct: 114 YRYEDGERWAEIPSVPLETINEFKEGIIAIAGDYFSCYGQNVASGRDSLALEYMDRLNEI 173

Query: 178 FG-DRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           F  D LY+++  +    +   ++  V+LA  +   +VA  +  ++  ED  +H +L  ++
Sbjct: 174 FDHDHLYISVCDNGIPQQKHVNEFNVELAKKYGREVVAVGDVHYIKPEDATSHKILRCIS 233

Query: 236 -HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ--VHAPIL 292
              T+   +D+   T   Y +   EMV +F  +P A+ENTV+IA RC+F ++  +     
Sbjct: 234 LKVTLNGFEDKRFPTEKFYFRTEKEMVELFGHIPGAIENTVKIAERCNFTVKTGIGDEFW 293

Query: 293 PRF 295
           PRF
Sbjct: 294 PRF 296


>gi|94990613|ref|YP_598713.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS10270]
 gi|94544121|gb|ABF34169.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10270]
          Length = 1036

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 313/1038 (30%), Positives = 517/1038 (49%), Gaps = 126/1038 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   + N             L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101

Query: 131  ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            + + +L Q +    +I+ + G S                           D L V    +
Sbjct: 102  LHMDYLCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             G D+Y +   +      +  L+      + +++D E   +L A+  +  +S  + P V 
Sbjct: 135  IGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188

Query: 250  PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D  L +  ++ + + +  P+AL+N  ++     +    +   LP F      +  K  +
Sbjct: 189  SDQELTDCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL+    AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ +
Sbjct: 242  QELQELTEAGLK--------EKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGR 293

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                 +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R 
Sbjct: 294  SKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I        S
Sbjct: 354  EFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 409

Query: 489  LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L  + + S  FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+  
Sbjct: 410  LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKS 469

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+  G ++D++ I  +D 
Sbjct: 470  G--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDP 527

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ 
Sbjct: 528  QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 587

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM 
Sbjct: 588  GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQ 647

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 648  KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845
            F    M     +      +  DA + + Q+   ++N+ P  D K+  ++IY  L  IKG+
Sbjct: 708  FYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 760

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                A  I+E    +PF+S+EDF +R+  K   +  LE L+  G  DCF  +R ++L +L
Sbjct: 761  PRDFAYWIIE---QRPFNSVEDFLTRIPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNL 817

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963
            D +                 +F +E G+     +      ++ S   ++  EQ ++G   
Sbjct: 818  DGLL----------------VFVNELGSLFSDSSFSWVDAKDYSATEKYSLEQEIVGVGM 861

Query: 964  SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            S HPL          + PI +   +    E+V  I+ ++IR+     S QQ        +
Sbjct: 862  SKHPLIDIAEKSTQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 910

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +++ ++  K+ +   FP
Sbjct: 911  AFLSVNDTKKKLDVTLFP 928


>gi|261415097|ref|YP_003248780.1| DNA polymerase III, alpha subunit [Fibrobacter succinogenes subsp.
            succinogenes S85]
 gi|261371553|gb|ACX74298.1| DNA polymerase III, alpha subunit [Fibrobacter succinogenes subsp.
            succinogenes S85]
          Length = 1285

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 262/670 (39%), Positives = 377/670 (56%), Gaps = 27/670 (4%)

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
            H  +  +R+  ELN I  M  +GY LIV DFI W++++ IPVGPGRGS AGS+  Y + I
Sbjct: 422  HETNVGKRMYKELNCIRNMNVAGYLLIVWDFINWSREHGIPVGPGRGSAAGSLVTYIIGI 481

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            TDIDPL F LLFERFLNP+R+SMPD D DF    R  VI+YV +KYG E V QIIT+G L
Sbjct: 482  TDIDPLTFDLLFERFLNPERVSMPDIDTDFADRDRGRVIQYVTDKYGKECVGQIITYGML 541

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR----FREARLADP-- 506
            ++KA + DV R L +P ++   + KL P    +    QA     +      +    +P  
Sbjct: 542  KSKAVITDVARVLGIPPAEAKAITKLFPQRTLNFSLKQAWTGKDKKGNNLEDGYSPEPLQ 601

Query: 507  -------SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
                   S   L +++++LE L R    HA G+VI   P+  L P+YR    D PV  ++
Sbjct: 602  AMIGSRASYQNLWDVAKRLEDLPRQTGVHACGVVITPTPIYNLAPLYRAAPEDTPVVMYD 661

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTL 618
              + E  GL+K DFLGL  L+++Q ++  + Q R +K+ ++ IP DD  T+ LL    T 
Sbjct: 662  KHYAEDIGLLKMDFLGLINLSIIQDTVKMVEQNRNIKLVMNKIPIDDKATFELLGKGLTT 721

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
             +FQ ES GM++ L  ++P  I D+IA+ +LYRPGPID I  +  RKNGKE+I   HP +
Sbjct: 722  TVFQFESPGMQKYLRELKPTRIFDLIAMNALYRPGPIDQIPHFIARKNGKEEIDCYHPDL 781

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            + +L ET GVI+YQEQVM++AQ+L GYSL  AD +RR M KK+ E+M K +  F      
Sbjct: 782  EQVLGETYGVIVYQEQVMKLAQILGGYSLGGADNIRRIMAKKMPEKMAKLEPEFFQKCLD 841

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             G  K +   +++ +  F  Y FNKSHAAAYA ++YQTA++KTHY  E++AASMT +M  
Sbjct: 842  KGYDKAMIQKVWDAVLPFCGYAFNKSHAAAYAYVAYQTAYLKTHYGPEYMAASMTSKMGK 901

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EA 856
             E       + ++  I ++ P++NT    F      +I Y LA I+ VG      ++ E 
Sbjct: 902  TEDTVTIILECKRLGIPVLSPNINTSLGVFSANTKGQILYGLAGIRNVGIAVVEDVVAER 961

Query: 857  SADKPFDSLEDFCSRVDSKK---------LNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                 +  + DFC RV   +         LN++VLE L+ AGALD    SR     ++D 
Sbjct: 962  ERRGIYKDIFDFCKRVTEYQAAQPEKRPPLNKKVLECLIMAGALDDLPGSRAVQCATVDR 1021

Query: 908  IQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              + A   ++++     ++F         +    LE+     +      E+ VLG + SG
Sbjct: 1022 ALEVAMRSQEDKAKGQVSLFDLGGPAAMPNTAEVLEEAEEWTAMEMLNKERSVLGLFLSG 1081

Query: 966  HPLDVYKPIL 975
            HPLD ++P L
Sbjct: 1082 HPLDEFRPEL 1091



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 148/309 (47%), Gaps = 37/309 (11%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL-------EFSQKA 62
           +FVHLQ HS +S+L+ +  L++IL   AA+  PA+A+TD   +F  L       E ++K 
Sbjct: 2   AFVHLQTHSEFSILQASARLDDILAAAAAENAPAVALTDHGAMFGILEIQTRGKELNKKR 61

Query: 63  CAAGIQP---IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
              G+ P   + GC + +D       +   K P  T   + LLV   +GY  L+ +VS  
Sbjct: 62  KEQGLPPVKTVYGCHIYVDTP-----SASQKDP-TTFERLTLLVENEKGYYNLLRIVS-- 113

Query: 120 YLLDQGKQSVRICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
           Y  + G++   I    L+ I    EG+I + G       +        +A + +    ++
Sbjct: 114 YRYEDGERWAEIPSVPLETINEFKEGIIAIAGDYFSRYGQNVASGRDSLALEYMDRLNEI 173

Query: 178 FG-DRLYVNL-------QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
           F  D LY+++       Q+H   + +     V+LA  +   +VA  +  ++  ED  +H 
Sbjct: 174 FDHDHLYISVCDNGIPQQKH--VNEFN----VELAKKYGREVVAVGDVHYIKPEDATSHK 227

Query: 230 VLMAVA-HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ-- 286
           +L  ++   T+   +D+   T   Y +   EMV +F  +P A+ENTV+IA RC+F ++  
Sbjct: 228 ILRCISLKVTLNGFEDKRFPTEKFYFRTEKEMVELFGHIPGAIENTVKIAERCNFTVKTG 287

Query: 287 VHAPILPRF 295
           +     PRF
Sbjct: 288 IGDEFWPRF 296


>gi|71903627|ref|YP_280430.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS6180]
 gi|71802722|gb|AAX72075.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS6180]
          Length = 1036

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 313/1038 (30%), Positives = 517/1038 (49%), Gaps = 126/1038 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   + N             L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101

Query: 131  ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            + + +L Q +    +I+ + G S                           D L V    +
Sbjct: 102  LHMDYLCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             G D+Y +   +      +  L+      + +++D E   +L A+  +  +S  + P V 
Sbjct: 135  IGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188

Query: 250  PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D  L +  ++ + + +  P+AL+N  ++     +    +   LP F      +  K  +
Sbjct: 189  SDQELADCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL++   AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ +
Sbjct: 242  QELQDLTEAGLK--------EKGLWKEPYQSRLLRELVIISDMGFDDYFLIVWDLLRFGR 293

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                 +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R 
Sbjct: 294  SKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I        S
Sbjct: 354  EFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 409

Query: 489  LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L  + + S  FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+  
Sbjct: 410  LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKS 469

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+  G ++D++ I  +D 
Sbjct: 470  G--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDP 527

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ 
Sbjct: 528  QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 587

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM 
Sbjct: 588  GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQIYAGFTLGKADLLRRAMSKKNLQEMQ 647

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 648  KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845
            F    M     N      +  DA + + Q+   ++N+ P  D K+  ++IY  L  IKG+
Sbjct: 708  FYDIMMNYSSSN------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 760

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                A  I+E    +PF+S+EDF +R   K   +  LE L+  G  DCF  +R +++ +L
Sbjct: 761  PRDFAYWIVE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKIMDNL 817

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963
            D +                 +F +E G+     +      ++ S   ++  EQ ++G   
Sbjct: 818  DGLL----------------VFVNELGSLFSDSSFSWVDTKDYSATEKYSLEQEIVGVGM 861

Query: 964  SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            S HPL          + PI +   +    E+V  I+ ++IR+     S QQ        +
Sbjct: 862  SKHPLIDIAEKSTQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 910

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +++ ++  K+ +   FP
Sbjct: 911  AFLSVNDTKKKLDVTLFP 928


>gi|21910450|ref|NP_664718.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS315]
 gi|28896025|ref|NP_802375.1| DNA polymerase III DnaE [Streptococcus pyogenes SSI-1]
 gi|25452930|sp|Q8K7A1|DPO3A_STRP3 RecName: Full=DNA polymerase III subunit alpha
 gi|21904649|gb|AAM79521.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
            MGAS315]
 gi|28811275|dbj|BAC64208.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
            SSI-1]
          Length = 1036

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 314/1038 (30%), Positives = 516/1038 (49%), Gaps = 126/1038 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   + N             L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101

Query: 131  ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            + + +L Q +    +I+ + G S                           D L V    +
Sbjct: 102  LHMDYLCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             G D+Y +   +      +  L+      + +++D E   +L A+  +  +S  + P V 
Sbjct: 135  IGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188

Query: 250  PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D  L +  ++ + + +  P+AL+N  ++     +    +   LP F      +  K  +
Sbjct: 189  SDQELTDCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL+    AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ +
Sbjct: 242  QELQELTEAGLK--------EKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGR 293

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                 +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R 
Sbjct: 294  SKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I        S
Sbjct: 354  EFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 409

Query: 489  LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L  + + S  FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+  
Sbjct: 410  LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKS 469

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D+ +TQ++   IE  GL+K DFLGL+ LT +QK  + +A+  G ++D++ I  +D 
Sbjct: 470  G--DDMMITQYDAHAIEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDP 527

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ 
Sbjct: 528  QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 587

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM 
Sbjct: 588  GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQIYAGFTLGKADLLRRAMSKKNLQEMQ 647

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 648  KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845
            F    M     +      +  DA + + Q+   ++N+ P  D K+  ++IY  L  IKG+
Sbjct: 708  FYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 760

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                A  I+E    +PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +L
Sbjct: 761  PRDFAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNL 817

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963
            D +                 +F +E G+     +      ++ S   ++  EQ ++G   
Sbjct: 818  DGLL----------------VFVNELGSLFSDSSFSWVDAKDYSATEKYSLEQEIVGVGM 861

Query: 964  SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            S HPL          + PI +   +    E+V  I+ ++IR+     S QQ        +
Sbjct: 862  SKHPLIDIAEKSTQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 910

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +++ ++  K+ +   FP
Sbjct: 911  AFLSVNDTKKKLDVTLFP 928


>gi|209559542|ref|YP_002286014.1| DNA polymerase III DnaE [Streptococcus pyogenes NZ131]
 gi|209540743|gb|ACI61319.1| DNA polymerase III alpha subunit [Streptococcus pyogenes NZ131]
          Length = 1036

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 313/1038 (30%), Positives = 517/1038 (49%), Gaps = 126/1038 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   + N             L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101

Query: 131  ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            + + +L Q +    +I+ + G S                           D L V    +
Sbjct: 102  LHMDYLCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             G D+Y +   +      +  L+      + +++D E   +L A+  +  +S  + P V 
Sbjct: 135  IGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188

Query: 250  PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D  L +  ++ + + +  P+AL+N  ++     +    +   LP F      +  K  +
Sbjct: 189  SDQELTDCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL+    AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ +
Sbjct: 242  QELQELTEAGLK--------EKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGR 293

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                 +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R 
Sbjct: 294  SKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E +RYV+N+YG +  AQI+TF +  +K A+RDV +   +P  ++  L K I        S
Sbjct: 354  EFLRYVRNRYGSDHSAQIVTFSTFGSKQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 409

Query: 489  LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L  + + S  FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+  
Sbjct: 410  LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKS 469

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+  G ++D++ I  +D 
Sbjct: 470  G--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDP 527

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ 
Sbjct: 528  QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 587

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM 
Sbjct: 588  GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQ 647

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 648  KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845
            F    M     +      +  DA + + Q+   ++N+ P  D K+  ++IY  L  IKG+
Sbjct: 708  FYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 760

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                A  I+E    +PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +L
Sbjct: 761  PRDFAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNL 817

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963
            D +                 +F +E G+     +      ++ S   ++  EQ ++G   
Sbjct: 818  DGLL----------------VFVNELGSLFSDSSFSWVDAKDYSATEKYSLEQEIVGVGM 861

Query: 964  SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            S HPL          + PI +   +    E+V  I+ ++IR+     S QQ        +
Sbjct: 862  SKHPLIDIAEKSTQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 910

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +++ ++  K+ +   FP
Sbjct: 911  AFLSVNDTKKKLDVTLFP 928


>gi|15675237|ref|NP_269411.1| DNA polymerase III DnaE [Streptococcus pyogenes M1 GAS]
 gi|71910803|ref|YP_282353.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS5005]
 gi|81175277|sp|P0C0F3|DPO3A_STRP1 RecName: Full=DNA polymerase III subunit alpha
 gi|13622407|gb|AAK34132.1| putative DNA polymerase III (alpha subunit) [Streptococcus pyogenes
            M1 GAS]
 gi|71853585|gb|AAZ51608.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS5005]
          Length = 1036

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 313/1038 (30%), Positives = 517/1038 (49%), Gaps = 126/1038 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   + N             L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEIEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101

Query: 131  ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            + + +  Q +    +I+ + G S                           D L V    +
Sbjct: 102  LHMDYFCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             G D+Y +   +      +  L+      + +++D E   +L A+  +  +S  + P V 
Sbjct: 135  IGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188

Query: 250  PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D  L +  ++ + + +  P+AL+N  ++     +    +   LP F      +  K  +
Sbjct: 189  SDQELADCQQLTAFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL++   AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ +
Sbjct: 242  QELQDLTEAGLK--------EKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGR 293

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                 +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R 
Sbjct: 294  SKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I        S
Sbjct: 354  EFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 409

Query: 489  LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L  + + S  FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+  
Sbjct: 410  LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDALTNHIPLKS 469

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+  G ++D++ I  +D 
Sbjct: 470  G--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDITAIDLEDP 527

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ 
Sbjct: 528  QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 587

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM 
Sbjct: 588  GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQ 647

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 648  KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845
            F    M     +      +  DA + + Q+   ++N+ P  D K+  ++IY  L  IKG+
Sbjct: 708  FYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 760

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                A  I+E    +PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +L
Sbjct: 761  PRDFAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNL 817

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963
            D +                 +F +E G+     +      ++ SV  ++  EQ ++G   
Sbjct: 818  DGLL----------------VFVNELGSLFSDSSFSWVDTKDYSVTEKYSLEQEIVGVGM 861

Query: 964  SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            S HPL          + PI +   +    E+V  I+ ++IR+     S QQ        +
Sbjct: 862  SKHPLIDIAEKSTQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 910

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +++ ++  K+ +   FP
Sbjct: 911  AFLSVNDTKKKLDVTLFP 928


>gi|50914323|ref|YP_060295.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS10394]
 gi|73919250|sp|Q5XBV1|DPO3A_STRP6 RecName: Full=DNA polymerase III subunit alpha
 gi|50903397|gb|AAT87112.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10394]
          Length = 1036

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 314/1038 (30%), Positives = 516/1038 (49%), Gaps = 126/1038 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   + N             L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101

Query: 131  ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            + + +L Q +    +I+ + G S                           D L V    +
Sbjct: 102  LHMDYLCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             G D+Y +   +      +  L+      + +++D E   +L A+  +  +S  + P V 
Sbjct: 135  IGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188

Query: 250  PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D  L +  ++ + + +  P+AL+N  ++     +    +   LP F      +  K  +
Sbjct: 189  SDQELADCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL+    AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ +
Sbjct: 242  QELQELTEAGLK--------EKGLWKEPYQSRLLHELIIISDMGFDDYFLIVWDLLRFGR 293

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                 +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R 
Sbjct: 294  SKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I        S
Sbjct: 354  EFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 409

Query: 489  LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L  + + S  FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+  
Sbjct: 410  LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKS 469

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+  G ++D++ I  +D 
Sbjct: 470  G--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDP 527

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ 
Sbjct: 528  QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 587

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM 
Sbjct: 588  GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQ 647

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 648  KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845
            F    M     +      +  DA + + Q+   ++N+ P  D K+  ++IY  L  IKG+
Sbjct: 708  FYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 760

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                A  I+E    +PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +L
Sbjct: 761  PRDFAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNL 817

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963
            D +                 +F +E G+     +      ++ S   ++  EQ V+G   
Sbjct: 818  DGLL----------------VFVNELGSLFSDSSFSWVDTQDYSATEKYSLEQEVVGVGM 861

Query: 964  SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            S HPL          + PI +   +    E+V  I+ ++IR+     S QQ        +
Sbjct: 862  SKHPLIDIAEKSIQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 910

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +++ ++  K+ +   FP
Sbjct: 911  AFLSVNDTKKKLDVTLFP 928


>gi|257458194|ref|ZP_05623348.1| DNA polymerase III subunit alpha [Treponema vincentii ATCC 35580]
 gi|257444488|gb|EEV19577.1| DNA polymerase III subunit alpha [Treponema vincentii ATCC 35580]
          Length = 744

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 258/631 (40%), Positives = 375/631 (59%), Gaps = 24/631 (3%)

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFD+DFC +RR EVI YV+ KYG E V QIITFG+L+ KAA++DVGR L++P  +V+ 
Sbjct: 1    MPDFDVDFCFERRQEVIDYVRRKYGDESVGQIITFGTLKPKAAIKDVGRVLEIPLGEVNA 60

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            + K++P+DP      +A AD     E R +DP    L  I++KLE L R+ S HAAGIVI
Sbjct: 61   ITKMMPSDPKLTFE-KAFADVPELAEMR-SDPRYTELFSIAEKLEDLNRNTSLHAAGIVI 118

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
            G   L+  VP+Y+D ++    +QF M  IE  GL+K DFLGLKTLTL++ + D + +RG 
Sbjct: 119  GKTKLTDYVPLYKDSKTGKTASQFTMDLIEDCGLVKMDFLGLKTLTLIKHTEDLIKKRGG 178

Query: 594  --VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                  +  I   D  T+ +L    +  +FQ ES GM+  L+  +PD IED+IAL +LYR
Sbjct: 179  EYANFSIEQIDEQDAATFKMLGEGKSAAVFQFESQGMQNILKRAKPDKIEDLIALNALYR 238

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+  I  +   K    KI    P ++ +L ET GVI+YQEQVMQ+AQ + GYSL +AD
Sbjct: 239  PGPMAYIDQFIESKFDSSKIQYPDPCLEDILSETYGVIVYQEQVMQVAQRIGGYSLGQAD 298

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK KE M+K+K RFI GA KN   +  A  IFE+L  FA YGFNKSHAAAY+V
Sbjct: 299  LLRRAMGKKKKEVMEKEKTRFIEGAVKNNFREKDADRIFEILIPFAGYGFNKSHAAAYSV 358

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K ++P EF+AA++T E+ + +K+ ++  +A +  + +  P +NT    F V 
Sbjct: 359  LAYQTAYLKANFPAEFMAANLTNEITSTDKLPEYISEANKMGLALHAPDINTSEEYFSVY 418

Query: 832  DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            +  I + L  IKGVG   AR I+ E +A  P+ S  DF  R+D   +N++ LE L+  G 
Sbjct: 419  EGDIVFGLLGIKGVGEQAARDIVAERTAHGPYKSFIDFLDRLDLHTVNKKNLEVLIKTGC 478

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT--FSDKITLEKFSVENS 948
             D  G +R +LL +L+    ++   +        ++F  + G   FSD  T ++ +    
Sbjct: 479  FDKLGQNRSELLDNLEAAMAFSAQKKAGSAVGQTSLF-EDTGIKEFSD-FTFKQVNDLPQ 536

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-------KGYEESVATIRGNNIRLAAMV 1001
              +   E+ ++GFY SGHPLD YK  + +          +  +E + TI G       M+
Sbjct: 537  KEKLRIEKELMGFYISGHPLDEYKKAIDRSATLELINFRRAQKEKLYTIVG-------MI 589

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +  +T+ G  +G+ TF +     +  FF
Sbjct: 590  TGIRPYQTKNGKWMGFGTFEDRTGTIDLTFF 620


>gi|306827247|ref|ZP_07460534.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus pyogenes
            ATCC 10782]
 gi|304430394|gb|EFM33416.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus pyogenes
            ATCC 10782]
          Length = 1036

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 313/1038 (30%), Positives = 516/1038 (49%), Gaps = 126/1038 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   + N             L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101

Query: 131  ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            + + +L Q +    +I+ + G S                           D L V    +
Sbjct: 102  LHMDYLCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             G D+Y +   +      +  L+      + +++D E   +L A+  +  +S  + P V 
Sbjct: 135  IGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188

Query: 250  PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D  L +  ++ + + +  P+AL+N  ++     +    +   LP F      +  K  +
Sbjct: 189  SDQELTDCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL+    AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ +
Sbjct: 242  QELQELTEAGLK--------EKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGR 293

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                 +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R 
Sbjct: 294  SKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I        S
Sbjct: 354  EFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 409

Query: 489  LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L  + + S  FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+  
Sbjct: 410  LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKS 469

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+  G ++D++ I  +D 
Sbjct: 470  G--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDP 527

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ 
Sbjct: 528  QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 587

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM 
Sbjct: 588  GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQ 647

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 648  KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845
            F    M     +      +  DA + + Q+   ++N+ P  D K+  ++IY  L  IKG+
Sbjct: 708  FYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 760

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                A  I+E    +PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +L
Sbjct: 761  PRDFAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNL 817

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963
            D +                 +F +E G+     +      ++ S   ++  EQ ++G   
Sbjct: 818  DGLL----------------VFVNELGSLFSDSSFSWVDAKDYSATEKYSLEQEIVGVGM 861

Query: 964  SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            S HPL          + PI +   +    E+V  I+ ++IR+     S QQ        +
Sbjct: 862  SKHPLIDIAEKSTQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 910

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +++ ++  K+ +   FP
Sbjct: 911  AFLSVNDTKKKLDVTLFP 928


>gi|226327033|ref|ZP_03802551.1| hypothetical protein PROPEN_00894 [Proteus penneri ATCC 35198]
 gi|225204251|gb|EEG86605.1| hypothetical protein PROPEN_00894 [Proteus penneri ATCC 35198]
          Length = 584

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 246/594 (41%), Positives = 353/594 (59%), Gaps = 23/594 (3%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P F+HL+VHS YS+++G      ++ K+A+   PA AITD  NL   ++F   A  AGI+
Sbjct: 4   PRFIHLRVHSDYSMIDGLAKTGPLVKKVASLGMPAFAITDFTNLCGLVKFYGAAHGAGIK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PIIG   D+ ++  L               + +L     GYQ L  L+S  Y    G   
Sbjct: 64  PIIGA--DVYLETELLGDEYAH--------LTILARNNVGYQNLTLLISEAYKHGYGAAG 113

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I   WL     EGL++L+GG  G + +     +  + ++ L  ++  F D  Y+ L R
Sbjct: 114 PTIKQEWLTTY-KEGLLLLSGGRMGDVGKFLLRGNRALVDQCLEYYQTHFPDSYYLELIR 172

Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  +     + V LA    LP+VATN+  FL  +D++AH++ +A+     +S   RP+
Sbjct: 173 TGRTDEETYLHEAVALASEKGLPVVATNDVCFLDSDDFDAHEIRVAIHDGFTLSDPKRPK 232

Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +P  Y++   EM  +F+D+PEALEN+VEIA+RC+  +++    LP+F           
Sbjct: 233 NYSPQQYMRTEEEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPTG-----NMS 287

Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288 TEDFLVKKSQEGLEERLAFLFPDPEERKKRRPEYDERLDIELKVINQMGFPGYFLIVMEF 347

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           IQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408 MEKRDRVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468 GMTLE-KAFAAEPQLPEIYEADEEVKSLIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKV 596
           P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + A+R  KV
Sbjct: 527 PLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKV 580


>gi|94994536|ref|YP_602634.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS10750]
 gi|94548044|gb|ABF38090.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10750]
          Length = 1036

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 313/1038 (30%), Positives = 517/1038 (49%), Gaps = 126/1038 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   + N             L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101

Query: 131  ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            + + +L Q +    +I+ + G S                           D L V    +
Sbjct: 102  LHMDYLCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             G D+Y +   +      +  L+      + +++D E   +L A+  +  +S  + P V 
Sbjct: 135  IGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188

Query: 250  PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D  L +  ++ + + +  P+AL+N  ++     +    +   LP F      +  K  +
Sbjct: 189  SDQELADCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL++   AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ +
Sbjct: 242  QELQDLTEAGLK--------EKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGR 293

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                 +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R 
Sbjct: 294  SKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I        S
Sbjct: 354  EFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 409

Query: 489  LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L  + + S  FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+  
Sbjct: 410  LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHMPLKS 469

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+  G ++D++ I  +D 
Sbjct: 470  G--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDP 527

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ 
Sbjct: 528  QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 587

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM 
Sbjct: 588  GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQ 647

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 648  KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845
            F    M     +      +  DA + + Q+   ++N+ P  D K+  ++IY  L  IKG+
Sbjct: 708  FYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 760

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                A  I+E    +PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +L
Sbjct: 761  PRDFAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNL 817

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963
            D +                 +F +E G+     +      ++ S   ++  EQ ++G   
Sbjct: 818  DGLL----------------VFVNELGSLFSDSSFSWVDAKDYSATEKYSLEQEIVGVGM 861

Query: 964  SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            S HPL          + PI +   +    E+V  I+ ++IR+     S QQ        +
Sbjct: 862  SKHPLIDIAEKSTQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 910

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +++ ++  K+ +   FP
Sbjct: 911  AFLSVNDTKKKLDVTLFP 928


>gi|225873142|ref|YP_002754601.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC
            51196]
 gi|225792983|gb|ACO33073.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC
            51196]
          Length = 1072

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 320/1035 (30%), Positives = 528/1035 (51%), Gaps = 71/1035 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V L   S++S LEG  +  ++ ++ AA Q PA+A+ D N L+ A  F   A   G+Q  
Sbjct: 5    YVELHAASAFSFLEGGSNPESLTERAAALQMPAMALLDRNGLYGAARFHTSAQRHGVQAN 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTP--FPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IG ++ +  +   ++T     P  +PT P  + LL +T +GYQ L +L+SR  L +  KQ
Sbjct: 65   IGAEVAVP-EFGARLTPPAWLPHLWPTEPVRLPLLCATRKGYQNLCQLISRYKLREPSKQ 123

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNL 186
                 ++ L++   EGLI LTGGS GP+  A         +K L     +FG + +YV L
Sbjct: 124  EGAARVNELEQF-AEGLICLTGGSEGPLAAALMQGGEAAGQKLLHRLTAIFGHQHVYVEL 182

Query: 187  QRHRGYDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            QRH  +DR   +R    +++A+   LP+VATN   + SE D E  D+  A+ H T + + 
Sbjct: 183  QRH--HDREQEWRNQAALRIAHKLRLPMVATNGVRYASERDREVLDLFTAIRHHTPLDRA 240

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                      +L++  EM ++F D+P A+ENT+E++ R +F L       PR+     D 
Sbjct: 241  GHLLSANSLRHLRSAREMAALFRDIPAAIENTIELSSRLAFQLSDLGYEFPRYPVPAGDC 300

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL----DFELNVIARMKFSGYFL 358
            +    ++ LR +   G+ +R          H  D   R+    + EL++IAR+ F+GYFL
Sbjct: 301  M----DSFLRKRVQEGVALRY------NSRHNHDLLARVHKQVERELSLIARLGFAGYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV D I++ K+++I V  GRGS A SV  YAL IT +DP+   LLFERFLN +R   PD 
Sbjct: 351  IVWDIIRFCKQHDILV-QGRGSAANSVVCYALEITAVDPVGMDLLFERFLNENRGEWPDI 409

Query: 419  DIDF-CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D+D   +++R++ I+YV  +YG    A      + + K+A R+VG+AL      + RL  
Sbjct: 410  DLDLPSEEKREQAIQYVYQRYGELGAAMTANVITYRGKSAAREVGKALGFDADALQRLSG 469

Query: 478  LIPN-DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            L+ N +   P    ++A   R      A P + R LE+  +++ + RH   H+ G+VI  
Sbjct: 470  LVANFEWKGPTD--SLAHSFRHAGFDPAQPRIARYLELCTRIQDMPRHLGQHSGGMVICQ 527

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVK 595
              L+Q+VP+ R       V Q++ +     G+IK D LGL  + +L+  ++ + +  G +
Sbjct: 528  GQLNQVVPVERASMPGRTVVQWDKEDCADMGIIKVDLLGLGMMAVLKDCVELIPRHYGER 587

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +DL+ +P  D   Y  L    T+G+FQ+ES     +L    P    D++  V++ RPGPI
Sbjct: 588  IDLAQLP-QDEAVYRTLQRADTVGMFQVESRAQMASLPRNMPAKFYDLVVQVAIIRPGPI 646

Query: 656  DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               ++  Y  R+ GKE +   HP ++P+L+ T GV ++QEQ+++IA  ++ +S +EA+ L
Sbjct: 647  VGKMMHPYMRRRQGKEPVTYPHPSLEPVLQRTLGVPLFQEQLLRIAMTVANFSGTEAEEL 706

Query: 714  RRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRA+G ++  E M   + +  +G + NGI+      I + ++ FA YGF +SHAA++A+I
Sbjct: 707  RRAVGMRRSWERMKNLESKLRAGMAANGIAPATQEQIIQQISSFALYGFPESHAASFALI 766

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT---PCVDFK 829
            +Y +A++K  Y   F  A +  +           +DA++  +++ P  +     PC   +
Sbjct: 767  AYASAYLKVKYLAAFTCALLNNQPMGFYMPAVIVKDAQRHGLRVKPIDIQISAWPCTLEQ 826

Query: 830  VGDN--RIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLV 886
              D+   +   L   +G+   TA   + A  +  PF S E+  +RV +  L+R+ L  L 
Sbjct: 827  EPDDSLSLRLGLGYARGLRQRTAEATLHARQENGPFSSAENLVARVPA--LSRKELALLA 884

Query: 887  FAGALDCFGYSRMQLLQSLDNI--QKYAQWVEKNRTNKHEN-IFAHEKGTFSDKITLEKF 943
              GAL+           SLD +  ++ A W +  R  K E  +FA       ++      
Sbjct: 885  RIGALN-----------SLDQVAHRRDALW-QIERAGKPEGPLFAQSNEALREQ------ 926

Query: 944  SVENSSVRFENEQRVLGFYFSG------HPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
             V    +    E+R++  YF        HP+   +  L   GI           G  +R+
Sbjct: 927  DVALPLMPMTTEERLVADYFGTGLTVGKHPMSYRRQELDHAGILTASALQQFQDGKLVRV 986

Query: 998  AAMVVSKQQKKTRKG 1012
            A  V+++Q+  T KG
Sbjct: 987  AGCVIARQRPGTAKG 1001


>gi|218290516|ref|ZP_03494625.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            LAA1]
 gi|218239419|gb|EED06615.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            LAA1]
          Length = 1039

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 324/1036 (31%), Positives = 514/1036 (49%), Gaps = 58/1036 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  HS YS L+GA S+  ++ + AA   PA+A+TD N +    EF + A   G++PI
Sbjct: 2    FVHLHCHSPYSFLDGASSIETLVAQAAAQGMPALALTDRNTIAGQPEFHRLAALYGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L ++    L                V+L   A+G++ L EL++RM++  + +   R
Sbjct: 62   AGAELTLEDGSQL----------------VVLAEHAKGFRHLCELLTRMHVDARDRADPR 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +  + L E   EGL++L+GG  G + RA    +   A + +  ++ +FGDR Y+      
Sbjct: 106  LREADLFE-RNEGLLILSGGLRGFVQRALARRAYGDARRFVERYRDVFGDRFYLEWTADG 164

Query: 191  --GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL--MAVAHSTVVSQKDRP 246
              G  R R   ++ LA    +P VA       S E+   HDVL  + V         +RP
Sbjct: 165  LPGCAR-RMRDLLDLAEATGVPAVAATEVRAASPEEVAVHDVLTCIRVGCDLQTPHPERP 223

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  YL + +E +  F+  P A+  TVEIA RCS +     P+ P + +         
Sbjct: 224  -FNRLGYLHDEAEAMRRFAQDPRAMARTVEIAERCSPVFPAEGPLFPEYRDASG------ 276

Query: 307  EENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                     V  LE  + +GA  + G  + + R RL+ EL +I  + ++ YFL+V D ++
Sbjct: 277  ------RGGVEFLEQLVWRGARERYGKVSPELRIRLEHELAIIRDLGYADYFLVVWDIVR 330

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I    GRGS A SV AY L +TD+D L  +LLFERFL+ +R   PD DIDF  D
Sbjct: 331  YARSRGIRCA-GRGSAADSVVAYCLYLTDVDALNRNLLFERFLSRERAERPDIDIDFASD 389

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI YV  +YG +RVA++ T+ + +A++A+R+VGR   +P   +D+L K IP     
Sbjct: 390  RRDEVIDYVYRRYGRDRVARVATYQTFRARSAVREVGRVFGIPEELLDQLAKRIPWSTHA 449

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                +A+      R+ +    +   +L +S+++ G  RH  TH  GIVI   PL ++  +
Sbjct: 450  DEIEEALERVPELRDFQPYRRAFQWMLAVSRQIAGFPRHFGTHTGGIVISGEPLMKVTSL 509

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                   L +T ++ + +E  GL+K D L L+T+  ++ +L     R   VD   IP DD
Sbjct: 510  QPSASGWL-ITPYDKRLLEDVGLVKLDLLSLRTMAAVEGALRLGTARA--VDYDHIPMDD 566

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
              T+  +    T+G+FQLES   R     +  + +ED++A V+L RPGPI   +V  +  
Sbjct: 567  EATFASIRRGDTIGVFQLESPAQRALQVRLGAESLEDLVASVALIRPGPIQGNMVDPFLA 626

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+ G E +  +HP ++P+L +T GV+++QEQV++IA  ++G++  EAD LRR M   + +
Sbjct: 627  RRRGLEPVSYLHPKLEPILGKTYGVVLFQEQVIEIATAIAGFTPGEADELRRVMSHARSR 686

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EM++  ERF+  A   G+    A  +F  +  +A YGF ++HAAA+A  +Y+TA++  H
Sbjct: 687  AEMEQIGERFVQKAVHQGVPLETAQTLFSYVRGYASYGFCEAHAAAFATTAYKTAYLIEH 746

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAA 841
            +P  F AA +             C +AR+  ++I+P  +N    D  V + + I      
Sbjct: 747  HPASFFAAVLNQLPMGYYPAHVICAEARRRGVRILPVDINESEWDAGVPEPDAIRLGFRL 806

Query: 842  IKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CFGYSRM 899
            I+      AR ++E   A  PF  L D  +RV   + +    E L+ AGA D      R 
Sbjct: 807  IRSFSERVARALVEERQASGPFRCLSDAVTRV--PQADALHFERLIRAGAFDRVESRDRR 864

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENS-SVRFENEQ 956
            +LL  L  +          R  K   +F          D I L +     S + R  +E 
Sbjct: 865  ELLWQLPRLLVL-------RKEKALALFDTISAPSPAEDAIRLPQSMPPMSLAERIADEY 917

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             VLG   SGH L +Y+  LR  G     E      G  +++A + +   +  T+ G  + 
Sbjct: 918  SVLGVGVSGHWLSLYREALRSEGYCTLAEVGEKREGARVKVAGLSIRPHRPPTKSGKTVV 977

Query: 1017 WVTFSEPAKEYEANFF 1032
            + T  +     +A  F
Sbjct: 978  FFTLEDETGIADAVMF 993


>gi|94988724|ref|YP_596825.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS9429]
 gi|94992547|ref|YP_600646.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS2096]
 gi|94542232|gb|ABF32281.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS9429]
 gi|94546055|gb|ABF36102.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS2096]
          Length = 1036

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 312/1038 (30%), Positives = 516/1038 (49%), Gaps = 126/1038 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   + N             L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101

Query: 131  ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            + + +L Q +    +I+ + G S                           D L V    +
Sbjct: 102  LHMDYLCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             G D+Y +   +      +  L+      + +++D E   +L A+  +  +S  + P V 
Sbjct: 135  IGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188

Query: 250  PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D  L +  ++ + + +  P+AL+N  ++     +    +   LP F      +  K  +
Sbjct: 189  SDQELADCQQLTAFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL++   AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ +
Sbjct: 242  QELQDLTEAGLK--------EKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGR 293

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                 +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R 
Sbjct: 294  SKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I        S
Sbjct: 354  EFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 409

Query: 489  LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L  + + S  FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+  
Sbjct: 410  LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKS 469

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+  G ++D++ I  +D 
Sbjct: 470  G--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDP 527

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ 
Sbjct: 528  QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 587

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+EKI  I P+I  +L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM 
Sbjct: 588  GQEKIDLIDPVIASILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQ 647

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 648  KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845
            F    M     +      +  DA + + Q+   ++N+ P  D K+  ++IY  L  IKG+
Sbjct: 708  FYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 760

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                A  I+E    +PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +L
Sbjct: 761  PRDFAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNL 817

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963
            D +                 +F +E G+     +      ++ S   ++  EQ ++G   
Sbjct: 818  DGLL----------------VFVNELGSLFSDSSFSWVDTKDYSATEKYSLEQEIVGVGM 861

Query: 964  SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            S HPL          + PI +   +    E+V  I+ ++IR+     S QQ        +
Sbjct: 862  SKHPLIDIAEKSTQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 910

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +++ ++  K+ +   FP
Sbjct: 911  AFLSVNDTKKKLDVTLFP 928


>gi|258511002|ref|YP_003184436.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            subsp. acidocaldarius DSM 446]
 gi|257477728|gb|ACV58047.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            subsp. acidocaldarius DSM 446]
          Length = 1039

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 324/1035 (31%), Positives = 521/1035 (50%), Gaps = 56/1035 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  HS YS L+GA S+  ++ + AA   PA+A+TD N +    EF + A A G++PI
Sbjct: 2    FVHLHCHSPYSFLDGASSIEALVAQAAAQGMPALALTDRNTIAGQPEFHRLAAAYGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L   M+D  ++              V+L   A G++ L EL++RM++  + +   R
Sbjct: 62   AGAELT--MEDGSQL--------------VVLAEHATGFRHLCELLTRMHVDARDRADPR 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +  + L E  +EGL++L+GG  G + RA    +   A + +  ++ +FGDR Y+      
Sbjct: 106  LREADLFE-RSEGLLILSGGLRGFVQRALARRAYGDARRFVERYRNVFGDRFYLEWTADG 164

Query: 191  --GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL--MAVAHSTVVSQKDRP 246
              G  R R   ++ LA    +P VA       S E+   HDVL  + V         +RP
Sbjct: 165  LPGCAR-RMRDLLDLAEATGVPAVAATEVRAASPEEVAVHDVLTCIRVGCDLQTPHPERP 223

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  YL + +E +  F+  P A+  TVEIA RCS +     P+ P     E  D    
Sbjct: 224  -FNRLGYLHDEAEAMRRFAQDPRAMARTVEIAERCSPVFPAEGPLFP-----EYRDASGR 277

Query: 307  EENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               EL       LE  + QGA  + G  + + + RL+ E  +I  + ++ YFL+V D ++
Sbjct: 278  GGVEL-------LEQLVWQGARKRYGKVSPELQMRLEHEFAIIRDLGYADYFLVVWDIVR 330

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I    GRGS A SV AY L +TD+D L  +LLFERFL+ +R   PD DIDF  D
Sbjct: 331  YARSRGIRCA-GRGSAADSVVAYCLYLTDVDALNRNLLFERFLSRERAERPDIDIDFASD 389

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI YV  +YG +RVA++ T+ + +A++A+R+VGR   +P   +D+L K IP     
Sbjct: 390  RRDEVIDYVYRRYGRDRVARVATYQTFRARSAVREVGRVFGIPEELLDQLAKRIPWSTHA 449

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                +A+      R+ +    +   +L +S+++ G  R+  TH  GIVI   PL ++  +
Sbjct: 450  DEIEEALERVPELRDFQPYRRAFQWMLAVSRQIAGFPRYFGTHTGGIVISGEPLMKVTSL 509

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                   L +T ++ + +E  GL+K D L L+T+  ++ +L     R   VD   IP DD
Sbjct: 510  QPSASGWL-ITPYDKRLLEDVGLVKLDLLSLRTMAAVEGALRLGTARA--VDYDHIPMDD 566

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
              T+  +    T+G+FQLES   R     +  + +ED++A V+L RPGPI   +V  +  
Sbjct: 567  EATFASIRRGDTIGVFQLESPAQRALQVRLGAESLEDLVASVALIRPGPIQGNMVDPFLA 626

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIK 722
            R+ G E +  +HP ++P+L +T GV+++QEQV++IA  ++G++  EAD LRR M   + +
Sbjct: 627  RRRGLEPVSYLHPKLEPILGKTYGVVLFQEQVIEIATAIAGFTPGEADELRRVMSHARSR 686

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EM++  ERF+  A + G+    A  +F  +  +A YGF ++HAAA+A  +Y+TA++  H
Sbjct: 687  AEMEQIGERFVQKAVRQGVPLETAKTLFSYVRGYASYGFCEAHAAAFATTAYKTAYLIEH 746

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAA 841
            +P  F AA +             C +AR+  ++I+P  +N    D  V + + I      
Sbjct: 747  HPASFFAAVLNQLPMGYYPAHVICAEARRRGVRILPVDINESEWDAGVPEPDAIRLGFRL 806

Query: 842  IKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            I+      AR ++E   A   F SL D   R+   + +    E L+ AGA D     R++
Sbjct: 807  IRSFSERVARALVEERQAFGSFRSLADAVMRL--PQADALHFERLIRAGAFD-----RVE 859

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENS-SVRFENEQR 957
                 + + +  +W+   R  K   +F          D I L +     S + R  +E  
Sbjct: 860  SRDRRELLWQLPRWL-ALRKEKALALFDTISAPSPAEDAIRLPQSMPPMSLAERIADEYS 918

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            VLG   SGH L +Y+  LR  G     E+     G  +++A + +   +  T+ G  + +
Sbjct: 919  VLGVGVSGHWLSLYREALRNEGYCTLAEAGEKREGARVKVAGLSIRPHRPPTKSGKTVVF 978

Query: 1018 VTFSEPAKEYEANFF 1032
             T  +     +A  F
Sbjct: 979  FTLEDETGIADAVMF 993


>gi|19746207|ref|NP_607343.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS8232]
 gi|25452932|sp|Q8P0S5|DPO3A_STRP8 RecName: Full=DNA polymerase III subunit alpha
 gi|19748390|gb|AAL97842.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS8232]
          Length = 1036

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 312/1038 (30%), Positives = 516/1038 (49%), Gaps = 126/1038 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   + N             L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101

Query: 131  ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            + + +L Q +    +I+ + G S                           D L V    +
Sbjct: 102  LHMDYLCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             G D+Y +   +      +  L+      + +++D E   +L A+  +  +S  + P V 
Sbjct: 135  IGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188

Query: 250  PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D  L +  ++ + + +  P+AL+N  ++     +    +   LP F      +  K  +
Sbjct: 189  SDQELADCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL++   AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ +
Sbjct: 242  QELQDLTEAGLK--------EKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGR 293

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                 +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R 
Sbjct: 294  SKGYYMGMGRGSAAGSLVAYALDITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I        S
Sbjct: 354  EFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 409

Query: 489  LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L  + + S  FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+  
Sbjct: 410  LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKS 469

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+  G ++D++ I  +D 
Sbjct: 470  G--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDP 527

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ 
Sbjct: 528  QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 587

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM 
Sbjct: 588  GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQ 647

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 648  KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845
            F    M     +      +  DA + + Q+   ++N+ P  D K+  ++IY  L  IKG+
Sbjct: 708  FYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 760

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                A  I+E    +PF+S+EDF +R   K   +  LE L+  G  D F  +R ++L +L
Sbjct: 761  PRDFAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDYFEPNRKKILDNL 817

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963
            D +                 +F +E G+     +      ++ S   ++  EQ ++G   
Sbjct: 818  DGLL----------------VFVNELGSLFSDSSFSWVDTKDYSATEKYSLEQEIVGVGM 861

Query: 964  SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            S HPL          + PI +   +    E+V  I+ ++IR+     S QQ        +
Sbjct: 862  SKHPLIDIAEKSTQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 910

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +++ ++  K+ +   FP
Sbjct: 911  AFLSVNDTKKKLDVTLFP 928


>gi|139473654|ref|YP_001128370.1| DNA polymerase III DnaE [Streptococcus pyogenes str. Manfredo]
 gi|134271901|emb|CAM30139.1| DNA polymerase III alpha subunit [Streptococcus pyogenes str.
            Manfredo]
          Length = 1036

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 312/1038 (30%), Positives = 515/1038 (49%), Gaps = 126/1038 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   + N             L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101

Query: 131  ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            + + +L Q +    +I+ + G S                           D L V    +
Sbjct: 102  LHMDYLCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             G D+Y +   +      +  L+      + +++D E   +L A+  +  +S  + P V 
Sbjct: 135  IGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188

Query: 250  PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D  L +  ++ + + +  P+AL+N  ++     +    +   LP F      +  K  +
Sbjct: 189  SDQELADCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL+    AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ +
Sbjct: 242  QELQELTEAGLK--------EKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGR 293

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                 +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R 
Sbjct: 294  SKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I        S
Sbjct: 354  EFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 409

Query: 489  LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L  + + S  FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+  
Sbjct: 410  LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKS 469

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+  G ++D++ I  +D 
Sbjct: 470  G--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDP 527

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ 
Sbjct: 528  QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 587

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM 
Sbjct: 588  GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQ 647

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 648  KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845
            F    M     +      +  DA + + Q+   ++N+ P  D K+  ++IY  L  IKG+
Sbjct: 708  FYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 760

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                A  I+E    +PF+S+EDF +R   K   +  LE L+  G  D F  +R ++L +L
Sbjct: 761  PRDFAYWIIE---QRPFNSVEDFLTRAPEKYQKKFFLEPLIKIGLFDYFEPNRKKILDNL 817

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963
            D +                 +F +E G+     +      ++ S   ++  EQ ++G   
Sbjct: 818  DGLL----------------VFVNELGSLFSDSSFSWVDTKDYSATEKYSLEQEIVGVGM 861

Query: 964  SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            S HPL          + PI +   +    E+V  I+ ++IR+     S QQ        +
Sbjct: 862  SKHPLIDIAEKSTQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 910

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +++ ++  K+ +   FP
Sbjct: 911  AFLSVNDTKKKLDVTLFP 928


>gi|76363557|sp|P0C0F2|DPO3A_STRPY RecName: Full=DNA polymerase III subunit alpha
 gi|9789551|gb|AAF98350.1| DNA polymerase III alpha subunit [Streptococcus pyogenes]
          Length = 1034

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 312/1038 (30%), Positives = 516/1038 (49%), Gaps = 128/1038 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   + N             L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEIEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101

Query: 131  ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            + + +  Q +    +I+ + G S                           D L V    +
Sbjct: 102  LHMDYFCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             G D+Y +   +      +  L+      + +++D E   +L A+  +  +S  + P V 
Sbjct: 135  MGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188

Query: 250  PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D  L +  ++ + + +  P+AL+N  ++     +    +   LP F      +  K  +
Sbjct: 189  SDQELADCQQLTAFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL++   AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ +
Sbjct: 242  QELQDLTEAGLK--------EKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGR 293

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                 +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R 
Sbjct: 294  SKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E +RYV+N+YG +  AQI+TF +     A+RDV +   +P  ++  L K I        S
Sbjct: 354  EFLRYVRNRYGSDHSAQIVTFSTF--GQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 407

Query: 489  LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L  + + S  FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+  
Sbjct: 408  LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDALTNHIPLKS 467

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+  G ++D++ I  +D 
Sbjct: 468  G--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDITAIDLEDP 525

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ 
Sbjct: 526  QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 585

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM 
Sbjct: 586  GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQ 645

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 646  KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 705

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845
            F    M     +      +  DA + + Q+   ++N+ P  D K+  ++IY  L  IKG+
Sbjct: 706  FYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 758

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                A  I+E    +PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +L
Sbjct: 759  PRDFAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNL 815

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963
            D +                 +F +E G+     +      ++ SV  ++  EQ ++G   
Sbjct: 816  DGLL----------------VFVNELGSLFSDSSFSWVDTKDYSVTEKYSLEQEIVGVGM 859

Query: 964  SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            S HPL          + PI +   +    E+V  I+ ++IR+     S QQ        +
Sbjct: 860  SKHPLIDIAEKSTQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 908

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +++ ++  K+ +   FP
Sbjct: 909  AFLSVNDTKKKLDVTLFP 926


>gi|237732881|ref|ZP_04563362.1| DNA polymerase III subunit alpha [Mollicutes bacterium D7]
 gi|229384034|gb|EEO34125.1| DNA polymerase III subunit alpha [Coprobacillus sp. D7]
          Length = 1034

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 291/961 (30%), Positives = 489/961 (50%), Gaps = 125/961 (13%)

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYV------NLQRHRGY--DRYRESQVVQLAYT 206
            +   FF++    A+K L  +  +FG    +       +Q  + +    + +S++    Y 
Sbjct: 5    VSSGFFYD----ADKLLDEYTNIFGKNNVIIEISLHGIQSEKDFINSNWLQSKIFNEGYM 60

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR----------VTPDHYLKN 256
            +    VATN+  +L++E         A+  S  +S    P              + Y K 
Sbjct: 61   Y----VATNDIYYLNKEH--------ALHRSIGLSMNPNPDGIDEYSNYVDYNSEFYFKT 108

Query: 257  RSEMVSIFS----DLPEALENTVEIARRCSFILQVHAPI---LPRFIEKECDDIQKEEEN 309
              EM  +FS      P+ L N+ +I ++C+       PI   LP F            E 
Sbjct: 109  EKEMEKVFSAYLHKYPDLLTNSEKIVKQCN----AQVPIERALPEFPLPNG----FSSEQ 160

Query: 310  ELRNKAVAGLEVRLA-QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             L      G + +   + AI   +  +DY++RL+ E + I +M F  YFLIV DFI W+K
Sbjct: 161  YLYKLVWEGFKEKFPNESAIDNRFTLEDYKERLEHEFDTIVKMGFVDYFLIVQDFINWSK 220

Query: 369  --------------------------KN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
                                      KN  I VGPGRGS AGS+ AY L IT++DP+++ 
Sbjct: 221  DIEVYKHPEVYFPHIELSKVSKMCIEKNFEIKVGPGRGSAAGSLLAYCLKITNLDPMKYD 280

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPD DIDF    R++V+ YVQNKYG+  VAQI+TF  L+ K+ ++ V
Sbjct: 281  LLFERFLNPERVSMPDVDIDFSNRDREKVVEYVQNKYGYSHVAQIVTFQKLKLKSIIKKV 340

Query: 462  GRALQMPYSQVDRLCKLIPND---------------PAHPVSLQAIADDSRFREARLADP 506
             ++  +PYS+ D + K+IP                    P  L  I +   F      D 
Sbjct: 341  AKSYGIPYSKTDEMTKMIPGKICVSTEKEDGTIEIVEKEPELLCEIENIDYFSNLINKDD 400

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
             +  + ++ + LEGL      HAAG++IG +PL   +P+  +V   L VTQF  K  E  
Sbjct: 401  DIKLVFKMGKVLEGLTSTTGKHAAGVIIGRQPLQSYLPL-MEVDGVL-VTQFEKKASESI 458

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K DFLGL+TL ++Q++ + + +   ++  ++ I  +D +T+ +     T  +FQ E 
Sbjct: 459  GLLKMDFLGLQTLDIIQETEELVKENYNQIIHINDISIEDEKTFEIFQKGNTGRVFQFEG 518

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
            +GM+  L+ M P  +E + A  +LYRPGP+D I  Y   +    KI   H L   + +ET
Sbjct: 519  AGMKNLLKQMHPTSLEHLNAACALYRPGPMDYIPNYIEGRKFPNKIDYPHELFKEVAEET 578

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+++YQEQ+MQ+ Q ++G+SL EAD+LRR + KK K+ +DK +++F+ G  K  +++  
Sbjct: 579  FGILVYQEQIMQLVQKMAGFSLGEADILRRGISKKEKDYLDKARKQFVDGCKKINVAEET 638

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            +  I++ +  FA+YGFNKSH+ AY+ +SYQT W+K H+P  F+AA++T+   N +K+   
Sbjct: 639  SSKIYDTIELFAEYGFNKSHSCAYSYVSYQTGWLKAHFPEAFMAANLTVAAQNKDKVAAI 698

Query: 806  CQDARQFNIQIMPPSVNTP----CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
              + ++  I+++PP +N       ++ K G   I +   AI+ VG   A+     +  K 
Sbjct: 699  LSECKKMQIEVLPPDINKSEDKFTLENKNGKMCIRFGFNAIQDVGEQFAKQCSRKNK-KS 757

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
              S ++F + ++  +L +  L  ++ +GA D +G +R+ L + L+N+ +Y +  ++    
Sbjct: 758  LTSFQEFLNELNISQLRKDTLTFMINSGAFDNYG-TRLALNKELENLLEYEKAKKRINLV 816

Query: 922  KHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR-KM 978
             ++ + +     + D  +  L+K           NE+  + F  SGH LD Y+ + + K 
Sbjct: 817  GYKFVLSLPTNNYFDGYEYPLDKL--------VSNEKEAIHFSLSGHILDGYRNLYQEKT 868

Query: 979  GI------KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             I      + Y +S  ++ G       ++ + +Q  T+KGS++ +++  +   E E   F
Sbjct: 869  AIADIKIDQSYYDSYVSVLG-------IIKNIKQITTKKGSQMAFLSLEDETGELEGVIF 921

Query: 1033 P 1033
            P
Sbjct: 922  P 922


>gi|312862976|ref|ZP_07723216.1| DNA polymerase III, alpha subunit [Streptococcus vestibularis F0396]
 gi|322516651|ref|ZP_08069564.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            vestibularis ATCC 49124]
 gi|311101836|gb|EFQ60039.1| DNA polymerase III, alpha subunit [Streptococcus vestibularis F0396]
 gi|322124816|gb|EFX96243.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            vestibularis ATCC 49124]
          Length = 1036

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 312/1028 (30%), Positives = 518/1028 (50%), Gaps = 106/1028 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS ++  + LN  + +       +I + D +NL++A  F+Q A   G++P+
Sbjct: 2    FAQLDTKSVYSFMDSVVDLNTYVKRAKELGYQSIGLMDRDNLYAAYHFAQLAIRNGLRPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + ++         +  K PF       LL    +GY+ L++L +    L  G++   
Sbjct: 62   IGIEANL-------FYDGRKIPFR------LLAKNNQGYKNLMKLATE---LSSGQREFT 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   +L +I    LI+                 S+  E  +       G  +++ +   R
Sbjct: 106  LFSDYLNDIA---LII----------------PSEDWEPGMS-----LGSEVFIGV---R 138

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D  +E          + P+V  +   +    D      L A++ +  +S+     + P
Sbjct: 139  PEDAGKE---------FDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEAS---ICP 186

Query: 251  -DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +  L +  EM S +SD+PEAL N  ++    ++        LPRF  ++   +     +
Sbjct: 187  MNQLLFSPQEMESAYSDIPEALNNLEQLVSDITYQFDTDLK-LPRF-NRDMPAV-----D 239

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            +LR  A +GL+        +K      Y++RLD EL++I +M F  YFLIV D +++ + 
Sbjct: 240  QLRQLAQSGLD--------SKALREPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRS 291

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AY L IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 292  RGYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNEERYSMPDIDIDLPDIYRSE 351

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             + YV+++YG +  AQI+TF +  AK A+RDV +       ++ +L K I    +   +L
Sbjct: 352  FLHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKI----SFRDNL 407

Query: 490  QAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             ++ + +  FR+         R  EI++ +EG  R  S HAAGIV+ D  L+  +P+   
Sbjct: 408  TSVYEKNMSFRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--K 465

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + L + +G+ +D+  I  +D +
Sbjct: 466  TGEDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGIAIDIKSIDLEDSQ 525

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  +  T GIFQ E +G    L+ ++P   E+++A  SL RPG  D    +  RK G
Sbjct: 526  TLALFASGKTKGIFQFEQAGAINLLKRIKPTKFEEVVATTSLNRPGASDYTDNFIARKYG 585

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEK+  I P++ P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM K
Sbjct: 586  KEKVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFTLGKADLLRRAMSKKDANEMSK 645

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
              E F+ G+ + G    IA  +F ++AKFA YGFN+SHA AY+ +++Q A+ KTHYP  F
Sbjct: 646  MSEEFMKGSRRFGRDPQIAERLFSMMAKFAGYGFNRSHAYAYSALAFQLAYFKTHYPQIF 705

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVG 846
                +     +      + +DA +    +    +N  P +D K+ D +I   L  IKG+ 
Sbjct: 706  YDVMLNYSSSD------YIKDAIENGFSLASLDINRIPYLD-KISDGKIVLGLKTIKGLP 758

Query: 847  TTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
               A  I+E    +  + S+EDF +R+ SK     +L  L+  G  D F  +R +++ +L
Sbjct: 759  RDFALWIIEERKQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDIFEPNRQKIIGNL 818

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             N+  +         N+  ++FA    ++   +  E +S    + R+  EQ +LG   S 
Sbjct: 819  SNLFTF--------VNELGSLFAESSYSW---VEYEDYS---QTERYSIEQDLLGVGLST 864

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HPL     + +KM  + Y+        +   +   + S +  +T+KG ++ +++  +   
Sbjct: 865  HPLH----LAQKMTSRPYQPISELALNSKATVLVQLESVRIIRTKKGDQMAFLSVFDGVN 920

Query: 1026 EYEANFFP 1033
            + +   FP
Sbjct: 921  KLDVTLFP 928


>gi|55823117|ref|YP_141558.1| DNA polymerase III DnaE [Streptococcus thermophilus CNRZ1066]
 gi|55739102|gb|AAV62743.1| DNA polymeraDNA polymerase III alphase III alpha subunit
            [Streptococcus thermophilus CNRZ1066]
          Length = 1036

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 313/1028 (30%), Positives = 511/1028 (49%), Gaps = 106/1028 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS ++  + LN  + +       +I + D +NL++A  F+Q A   G++P+
Sbjct: 2    FAQLDTKSVYSFMDSVVDLNTYVKRAKELGYQSIGLMDRDNLYAAYHFAQLAIRNGLRPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + ++  +         K PF       LL    +GY+ LI+L +    L  G++   
Sbjct: 62   IGTEANLFYEGR-------KIPFR------LLAKNNQGYKNLIKLATE---LSSGQREFT 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                +L +I     ++L      P                        G  +++ +   R
Sbjct: 106  YFSDYLNDIA----LILPSEDWEP--------------------GMSLGSEVFIGV---R 138

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D  +E          + P+V  +   +    D      L A++ +  +S+     + P
Sbjct: 139  PEDAGKE---------FDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEVS---ICP 186

Query: 251  -DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +  L +  EM   +S LPEAL N  ++    S+    +   LPRF  +E   +     +
Sbjct: 187  MNQLLFSAKEMEEAYSKLPEALNNLNQLVSDVSYQFDTNLK-LPRF-NREMPAV-----D 239

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            +LR  A +GL+        +K      Y++RLD EL++I +M F  YFLIV D +++ + 
Sbjct: 240  QLRQLAQSGLD--------SKALREPAYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRS 291

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AY L IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 292  RGYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNKERYSMPDIDIDLPDIYRSE 351

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAHPVS 488
             + YV+++YG +  AQI+TF +  AK A+RDV +       ++ +L K I   D    V 
Sbjct: 352  FLHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKISFRDTLTTVY 411

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             + ++    FR+         R  EI++ +EG  R  S HAAGIV+ D  L+  +P+   
Sbjct: 412  EKNMS----FRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--K 465

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + L + +G+ +D+  I  +D +
Sbjct: 466  AGEDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGIAIDIKSIDLEDSQ 525

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  +  T GIFQ E +G    L+ ++P   E+++A  SL RPG  D    +  RK G
Sbjct: 526  TLALFASGKTKGIFQFEQAGAINLLKRIKPAKFEEVVATTSLNRPGASDYTDNFVARKYG 585

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEK+  I P++ P+L+ T G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK   EM K
Sbjct: 586  KEKVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKDANEMSK 645

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
              E+F+ G+ + G    +A  +F ++ KFA YGFNKSHA AY+ +++Q A+ KTHYP  F
Sbjct: 646  MSEQFMEGSRQLGRDPQVAKRLFSMITKFAGYGFNKSHAYAYSALAFQLAYFKTHYPQIF 705

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVG 846
                +     +      + +DA +    +    +N  P +D K+ D +I   L  IKG+ 
Sbjct: 706  YDVMLNYSSSD------YIRDAIENGFSLASLDINRIPYMD-KISDGKIVLGLKTIKGLP 758

Query: 847  TTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
               A  I+E    +  + S+EDF +R+ SK     +L  L+  G  D F  +R +++ +L
Sbjct: 759  RDFALWIIEDRQQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDRFEPNRQKIIGNL 818

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             N+  +         N+  ++FA    ++   +  E +S    + R+  EQ +LG   S 
Sbjct: 819  SNLFTF--------VNELGSLFAESSYSW---VEYEDYS---QTERYSIEQDLLGVGLST 864

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HPL     + +KM  + Y+        +   +   + S +  +T+KG ++ +++  +   
Sbjct: 865  HPLH----LAQKMASRPYQPISELTLNSKATVLVQLESVRIIRTKKGDQMAFLSVFDGVN 920

Query: 1026 EYEANFFP 1033
            + +   FP
Sbjct: 921  KLDVTLFP 928


>gi|157149864|ref|YP_001450622.1| DNA polymerase III DnaE [Streptococcus gordonii str. Challis substr.
            CH1]
 gi|157074658|gb|ABV09341.1| DNA-directed DNA polymerase III alpha chain [Streptococcus gordonii
            str. Challis substr. CH1]
          Length = 1033

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 316/1026 (30%), Positives = 505/1026 (49%), Gaps = 109/1026 (10%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             L   + YS ++  +S+   ++K        + I D +NL+ A  F ++  AAGIQ ++G
Sbjct: 4    QLDTKTVYSFMDSLVSIKKYVEKAKEFGYSHLGIMDMDNLYGAYHFLEETKAAGIQGLLG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              L++ ++D   +T            + LL   ++GY+ L++ VS + +LD+ + S    
Sbjct: 64   LDLNL-VKDGQPLT------------LRLLAINSQGYRNLMK-VSTLIMLDKKEWSD--- 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
               +Q +  +GL ++     G  D                      G   Y+ +      
Sbjct: 107  ---IQHL-MQGLALIVPAYPGIDDLDL-------------------GKDYYIGVS----- 138

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
                 +  +Q      LPL       +    D E   +L A+  +  VS ++   +    
Sbjct: 139  ----PTTPLQEFSRPTLPLYTVR---YFDTGDLETLQMLRAIREN--VSLREVGDLPSGQ 189

Query: 253  YLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            +L    ++  IF    PE+LEN   + R   + +      LPRF      + ++    EL
Sbjct: 190  HLLRPEQLRQIFEQTFPESLENLEGLVRDIHYDIDTELK-LPRF------NPERPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R ++ AGL+ R        G  +  Y++RLD EL VI +M F  YFLIV D +++ +   
Sbjct: 243  RERSEAGLKKR--------GLTSSLYQERLDQELAVIHKMGFDDYFLIVWDLLRFGRSQG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E I
Sbjct: 295  YYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERFTMPDIDIDIPDVYRPEFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAHPVSLQ 490
            RYV+++YG    AQI+T+ +  AK A+RDV +   +   ++  + K I   D  +    +
Sbjct: 355  RYVRDRYGTLHAAQIVTYSTFGAKQAIRDVFKRFGVAEYELTNITKKIRFGDNLNTAYEK 414

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
             IA    FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+     
Sbjct: 415  NIA----FRQIINSKLEYQKAFDIAKKIEGNPRQTSIHAAGVVMSDNDLTDQIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETY 609
             D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  + + +  I  +D +T 
Sbjct: 469  EDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEAVLKKYEIDIQIESIDLEDKKTL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  QLFAAGDTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGRE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +VSI   +D +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM K +
Sbjct: 589  AVVSIDESLDDILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNALEMHKME 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E F+SGA K G S+  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F  
Sbjct: 649  EEFVSGAMKLGHSEKKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPEVFFD 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA  F  ++ P ++NT     K  +N+I+  L  IKG+    
Sbjct: 709  VLLNYSSSD------YITDALSFGFKLAPLTINTVPYRDKFEENQIFLGLKNIKGLPRDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E   ++PF  +EDF  R+ S+      L  L+  G  D F  +R +++ +L N+ 
Sbjct: 763  AYWIIE---ERPFTGIEDFLLRLPSQYRKESFLIPLIQIGLFDSFESNRQKIISNLSNL- 818

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHP 967
                            IF  E G+     +     VE+ S   +FE EQ +LG   S HP
Sbjct: 819  ---------------FIFVEELGSLFADSSYSWTEVEDYSQAEKFELEQSILGVGLSDHP 863

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L      +     K +         +  ++ A V S +  +T+ G  + ++  ++  K+ 
Sbjct: 864  L----MTIANATTKSFTWIGDLAENSRAKILAQVQSIKVIRTKNGENMAFLQVTDTKKKL 919

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 920  DVTLFP 925


>gi|55821207|ref|YP_139649.1| DNA polymerase III DnaE [Streptococcus thermophilus LMG 18311]
 gi|55737192|gb|AAV60834.1| DNA polymeraDNA polymerase III alphase III alpha subunit
            [Streptococcus thermophilus LMG 18311]
          Length = 1036

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 313/1028 (30%), Positives = 511/1028 (49%), Gaps = 106/1028 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS ++  + LN  + +       +I + D +NL++A  F+Q A   G++P+
Sbjct: 2    FAQLDTKSVYSFMDSVVDLNTYVKRAKELGYQSIGLMDRDNLYAAYHFAQLAIRNGLRPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + ++  +         K PF       LL    +GY+ LI+L +    L  G++   
Sbjct: 62   IGTEANLFYEGR-------KIPFR------LLAKNNQGYKNLIKLATE---LSSGQREFT 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                +L +I     ++L      P                        G  +++ +   R
Sbjct: 106  YFSDYLNDIA----LILPSEDWEP--------------------GMSLGSEVFIGV---R 138

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D  +E          + P+V  +   +    D      L A++ +  +S+     + P
Sbjct: 139  PEDAGKE---------FDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEVS---ICP 186

Query: 251  -DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +  L +  EM   +S LPEAL N  ++    S+    +   LPRF  +E   +     +
Sbjct: 187  MNQLLFSAKEMEEAYSKLPEALNNLNQLVSDVSYQFDTNLK-LPRF-NREMPAV-----D 239

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            +LR  A +GL+        +K      Y++RLD EL++I +M F  YFLIV D +++ + 
Sbjct: 240  QLRQLAQSGLD--------SKALREPAYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRS 291

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AY L IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 292  RGYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNKERYSMPDIDIDLPDIYRSE 351

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAHPVS 488
             + YV+++YG +  AQI+TF +  AK A+RDV +       ++ +L K I   D    V 
Sbjct: 352  FLHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKISFRDTLTTVY 411

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             + ++    FR+         R  EI++ +EG  R  S HAAGIV+ D  L+  +P+   
Sbjct: 412  EKNMS----FRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--K 465

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + L + +G+ +D+  I  +D +
Sbjct: 466  AGEDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGIAIDIKSIDLEDSQ 525

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  +  T GIFQ E +G    L+ ++P   E+++A  SL RPG  D    +  RK G
Sbjct: 526  TLALFASGKTKGIFQFEQAGAINLLKRIKPAKFEEVVATTSLNRPGASDYTDNFVARKYG 585

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEK+  I P++ P+L+ T G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK   EM K
Sbjct: 586  KEKVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKDANEMSK 645

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
              E+F+ G+ + G    +A  +F ++ KFA YGFNKSHA AY+ +++Q A+ KTHYP  F
Sbjct: 646  MSEQFMEGSRQLGRDPQVAKRLFSMITKFAGYGFNKSHAYAYSALAFQLAYFKTHYPQIF 705

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVG 846
                +     +      + +DA +    +    +N  P +D K+ D +I   L  IKG+ 
Sbjct: 706  YDVMLNYSSSD------YIRDAIENGFSLASLDINRIPYMD-KISDGKIVLGLKTIKGLP 758

Query: 847  TTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
               A  I+E    +  + S+EDF +R+ SK     +L  L+  G  D F  +R +++ +L
Sbjct: 759  RDFALWIIEDRQQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDRFEPNRRKIIGNL 818

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             N+  +         N+  ++FA    ++   +  E +S    + R+  EQ +LG   S 
Sbjct: 819  SNLFTF--------VNELGSLFAESSYSW---VEYEDYS---QTERYSIEQDLLGVGLST 864

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HPL     + +KM  + Y+        +   +   + S +  +T+KG ++ +++  +   
Sbjct: 865  HPLH----LAQKMASRPYQPISELTLNSKATVLVQLESVRIIRTKKGDQMAFLSVFDGVN 920

Query: 1026 EYEANFFP 1033
            + +   FP
Sbjct: 921  KLDVTLFP 928


>gi|228476876|ref|ZP_04061521.1| DNA polymerase III subunit alpha [Streptococcus salivarius SK126]
 gi|228251450|gb|EEK10595.1| DNA polymerase III subunit alpha [Streptococcus salivarius SK126]
          Length = 1036

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 313/1028 (30%), Positives = 519/1028 (50%), Gaps = 106/1028 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS ++  + LN+ + +       A+ + D +NL++A  F+Q A   G++P+
Sbjct: 2    FAQLDTKSVYSFMDSVVDLNSYVARAKELGYQALGLMDRDNLYAAYHFAQLASRNGLRPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG      M+ NL    + K PF       LL    +GY+ L++L +    L  G++   
Sbjct: 62   IG------MEANLFYEGR-KIPFR------LLAKNNQGYKNLMKLATE---LSSGQREFT 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                +L +I     ++L      P                        G  +++ +   R
Sbjct: 106  AFSDYLNDIA----LILPSEDWEP--------------------GMTLGSEVFIGV---R 138

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D  +E          + P+V  +   +    D     +L A++ +  +S+     + P
Sbjct: 139  PEDAGKE---------FDYPVVPLHTVRYFENSDRSTIQMLHAISQNVSLSEAS---ICP 186

Query: 251  -DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +  L +  E+ S +SD+PEAL N  ++    ++        LPRF  ++   +     +
Sbjct: 187  MNQLLFSPQEIESAYSDIPEALNNLEQLVSDITYQFDTDLK-LPRF-NRDMPAV-----D 239

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            +LR  A +GLE        +K   +  Y++RLD EL++I +M F  YFLIV D +++ + 
Sbjct: 240  QLRQLAQSGLE--------SKKLTSPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRS 291

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AY L IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 292  RGYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNEERYSMPDIDIDLPDIYRSE 351

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             + YV+++YG +  AQI+TF +  AK A+RDV +       ++ +L K I    +   +L
Sbjct: 352  FLHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKI----SFRDNL 407

Query: 490  QAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             ++ + +  FR+         R  EI++ +EG  R  S HAAGIV+ D  L+  +P+   
Sbjct: 408  TSVYEKNMSFRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--K 465

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + L + +G+ +D+  I  +D +
Sbjct: 466  AGEDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGITIDIKSIDLEDPQ 525

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  +  T GIFQ E +G    L+ ++P   E+++A  SL RPG  D    +  RK G
Sbjct: 526  TLALFASGKTKGIFQFEQAGAINLLKRIKPAKFEEVVATTSLNRPGASDYTDNFIARKYG 585

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEK+  I P++ P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM K
Sbjct: 586  KEKVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFTLGKADLLRRAMSKKDANEMSK 645

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
              E+F+ G+ + G    IA  +F ++AKFA YGFN+SHA AY+ +++Q A+ KTHYP  F
Sbjct: 646  MSEQFMEGSRQLGRDPQIAERLFSMMAKFAGYGFNRSHAYAYSALAFQLAYFKTHYPQIF 705

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVG 846
                +     +      + +DA +    +    +N  P +D K+ D +I   L  IKG+ 
Sbjct: 706  YDVMLNYSSSD------YIKDAIENGFSLARLDINRIPYLD-KISDGKIVLGLKTIKGLP 758

Query: 847  TTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
               +  I+E    +  + S+EDF +R+ SK     +L  L+  G  D F  +R +++ +L
Sbjct: 759  RDFSLWIIEDRKQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDIFEPNRQKIIGNL 818

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +N+  +         N+  ++FA    ++ D    E +S    + R+  EQ +LG   S 
Sbjct: 819  NNLFTF--------VNELGSLFAESSYSWVD---YEDYS---QTDRYNLEQELLGVGLSP 864

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HPL     + +KM  + Y+            +   + S +  +T+KG ++ ++  ++   
Sbjct: 865  HPLH----LAQKMASRPYQPISDLTVNTKATVLVQLESVRIIRTKKGDQMAFLNVTDGIN 920

Query: 1026 EYEANFFP 1033
            + +   FP
Sbjct: 921  KLDVTLFP 928


>gi|269124207|ref|YP_003306784.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM
           12112]
 gi|268315533|gb|ACZ01907.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM
           12112]
          Length = 1056

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 285/927 (30%), Positives = 501/927 (54%), Gaps = 87/927 (9%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
           ++H+ YSLLEG  S+   + K   +    +AITD   +F+A++F     +  I PIIG +
Sbjct: 4   RIHTEYSLLEGVGSVEEYVQKARENNIKELAITDFG-MFAAIKFYNSCKSNNIVPIIGIE 62

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
           + +          +G      + ++ LL    +G + + +L +  +      +   I L 
Sbjct: 63  IHL----------KGFLDQENIYTLTLLAKNEKGVKNIYKLSTISH------ERNFILLD 106

Query: 135 WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR 194
            L E G + + +L+GG +  +      N  +  +K +    +     L + +     Y R
Sbjct: 107 DLLEHGKD-IYILSGGVNSELVSYVLKNDYKKVKKLMEIMLEKLDIILEIPMFEMLEYQR 165

Query: 195 YRESQVVQLAYTHELPL--VATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPD 251
               ++V      EL +  +  N   +L +ED     +  A+  + T+ + ++  +    
Sbjct: 166 LMFDKLVD-----ELNVKSIEVNEIYYLEKEDKILQKIFAAIKENRTLKTVQNEKKQDGL 220

Query: 252 HYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
           H++  N+ +   I +D+   L+N             V  P++     K  D + ++E   
Sbjct: 221 HFIINNQDKREDILNDIDIVLDNK-----------NVEFPLV-----KLPDGLSEKE--- 261

Query: 311 LRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
                     + + +  I K Y    ++ + R+++ELNVI +M +  YFLIV DFI++AK
Sbjct: 262 --------YIINILEKNIGKKYPNITKEIQDRINYELNVIDKMGYIKYFLIVHDFIKYAK 313

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
           +N+I +GPGRGS AGS+ +Y L IT++DP+++ L+FERFLNP+R+SMPD D+D  Q++R 
Sbjct: 314 ENDIFIGPGRGSAAGSIISYLLGITELDPIKYGLIFERFLNPERISMPDIDVDIEQEKRI 373

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
           ++I Y++  YG   V+QIITF + +   AL+D+ R  ++P   + +L      D +   S
Sbjct: 374 DLIEYIKRTYGSRNVSQIITFSTFKPTLALKDLARVFEIPEKSIRKLL-----DESKEKS 428

Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
           L  ++D             V  L++ ++++EG  +++STHAAG++I    + + +P+  D
Sbjct: 429 LDELSDSKEM---------VKSLIDYAKRIEGKIKNSSTHAAGVIITKEDMRENLPLIYD 479

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
             +     QF    +E  G +K D LGLK L +++   + + +    +D+  +P +  E 
Sbjct: 480 SYTKDYQIQFEANVLESLGYLKMDLLGLKNLNVVK---NVIKKVNEDIDIYNLP-EYEEA 535

Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID-----NIVVYNN 663
           ++LL T  T+GIFQ ES G+ Q    ++   +EDI  L++LYRPGP++     +++V  N
Sbjct: 536 FNLLNTGNTIGIFQCESRGITQLAMNLKIHSLEDIALLLALYRPGPLESGLIPSLIVMKN 595

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            KN   KI ++ P+I+ +L  T GV++YQEQVM+IAQ +SGYSL++AD LR+A+GKK  E
Sbjct: 596 NKNI--KIKTVDPMIEDILLPTYGVLVYQEQVMEIAQKISGYSLAKADELRKAIGKKNVE 653

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            + + ++ FI  A    I K  A  I++L+  F +YGFNK+HA +YA I+YQTA++K  Y
Sbjct: 654 LLKQNRKDFIENAI---IPKQRAEKIYDLIDNFGNYGFNKAHAISYANITYQTAYLKAKY 710

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
           P EF A+ +T E+   +K+     +  + NI++ PPS+N    +F++ +N I   L+A+K
Sbjct: 711 PREFFASLLTTELKVEKKLVNSYAEMLKRNIEMYPPSINRSTAEFEIEENGIRIPLSALK 770

Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            +   TAR ++E    +  F  + DF +R   + LN+  LE L+++G  D F   R +L+
Sbjct: 771 EMSEKTAREVVEEREKNGNFKDIFDFITR--CRFLNKSNLEGLIYSGCFDEFNIGRKKLI 828

Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAH 929
            +L +I K+     K++T+ + ++F +
Sbjct: 829 VNLQDIIKWIDKRNKSQTDIYSSLFLN 855


>gi|71893932|ref|YP_279378.1| DNA polymerase III DnaE [Mycoplasma hyopneumoniae J]
 gi|71852059|gb|AAZ44667.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae J]
          Length = 981

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 247/643 (38%), Positives = 376/643 (58%), Gaps = 29/643 (4%)

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
           ++ RL +E   I ++KF+ YFLI+ DF++WA+KN I +GPGRGS +GS+ AY L IT ++
Sbjct: 258 WKARLQYEYETICKLKFTNYFLIIWDFLKWARKNEILIGPGRGSASGSLVAYLLEITSVN 317

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL++ L+FERFLNP R++MPD DID    RR EVI Y+  KYG +  A IITF +L AK+
Sbjct: 318 PLKYDLIFERFLNPQRITMPDIDIDIQDTRRQEVIDYLFEKYGPDHCATIITFSTLAAKS 377

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD--DSRFR---------EARLAD 505
             RD+ +   +P  Q+++  KLIPN+     +L  + D   S FR         +A    
Sbjct: 378 VFRDISKTFGIPEIQINKNAKLIPNN----ANLSQLYDQKSSEFRRLIEKGDNFKAENNS 433

Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
               ++ +IS  LEG+ R +STHAAGIV+   P+++LVP++ + + +L   Q+  ++IE 
Sbjct: 434 EIYKKIYKISAFLEGMPRQSSTHAAGIVLSKIPITKLVPVH-NSKENLNQIQYAAEFIED 492

Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
             L+K D LGLK LT++   L  +   G K+  + +P  ++ T +LL+   T GIFQLES
Sbjct: 493 FSLLKIDLLGLKNLTIVANILAKINSDGHKITFNQLPISENSTNNLLSQGKTSGIFQLES 552

Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY--NNRKNGKEKIVSIHPLIDPMLK 683
            GM  +++ +    I DIIA++SL+RPGPI  I  Y  N  +N  EKI    P  D +++
Sbjct: 553 PGMTASIKKIGVSSINDIIAIISLFRPGPIQQIPTYAKNKERNNWEKIF---PEYDKIVE 609

Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            T GVIIYQEQ+MQI Q+++G++L +AD++R A+ KK + ++DK KE FI   +  G   
Sbjct: 610 STFGVIIYQEQIMQICQVVAGFNLEQADIIRVAISKKDETKLDKIKENFIKNGTNLGYEP 669

Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
            +  +I+ L+ KF+DYGFNK+HA AYA ++Y+ A++K  YP  F    ++ E     KIK
Sbjct: 670 KLVEDIYNLIYKFSDYGFNKAHAVAYATLAYKMAYLKAKYPAYFFVELISNENGAQAKIK 729

Query: 804 KFCQDARQFNIQIMPPSVN--TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADK 860
           K+  +AR F  +I  P++N  T    F  G N I+  L  +KG+GT   + I+ E S + 
Sbjct: 730 KYVGEARNFGFKIHRPNINFSTENAVFDKGKNTIFLPLLMVKGLGTIAIKTIIDERSKNG 789

Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            + +  DF  R+     ++  +E L+FA  L  FG ++  L  + + +  +A +V     
Sbjct: 790 IYKNFLDFIKRMKLVNFSKVAIEKLIFANTLSDFG-NQETLAHNFELLWNHASFV---LN 845

Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
           +K  N+         D   LEK    N    +ENE + LG  F
Sbjct: 846 DKDGNLVLTTDNFGLDLEFLEKIPY-NQEKNYENEVKYLGMSF 887


>gi|225850456|ref|YP_002730690.1| DNA polymerase III subunit alpha [Persephonella marina EX-H1]
 gi|225645313|gb|ACO03499.1| DNA polymerase III subunit alpha [Persephonella marina EX-H1]
          Length = 1574

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 267/718 (37%), Positives = 412/718 (57%), Gaps = 39/718 (5%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S  FVHL +H+ YSLL+GA+ +  +  K       A+ +TD  N+F A++F Q+    GI
Sbjct: 2   SGDFVHLHLHTHYSLLDGAIKIPELAQKAVEYGYKAVGMTDHGNIFGAVQFYQEMKKVGI 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS----IVLLVSTAEGYQRLIELVSRMYLLD 123
           +PIIG +         +   +GK     +      ++L      G++ L++L S  Y   
Sbjct: 62  KPIIGMEAYFTSN---RFEKKGKGSEDILSDKNYHLILHAKDKTGFKNLMKLSSLAYT-- 116

Query: 124 QGKQSVRICLSW-LQEIGTEGLIMLTGGSSGPIDRAFF---FNSSQVAEKRLLTFKKLFG 179
           +G    +  + W L E   EGLI  T    G I        F+ +    KRL   K +FG
Sbjct: 117 EG-FYYKPRIDWELLERYHEGLICQTACLKGFIPHLLSQGKFDEAYQQAKRL---KDIFG 172

Query: 180 DRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
           D LY  +Q +   ++   ++ +++LA    + +VATN+S +L+ ED +AHDV+ A+    
Sbjct: 173 DDLYFEIQINGLPEQEVANKGIIELARKLGVKIVATNDSHYLNPEDQKAHDVIKALQMKK 232

Query: 239 VVSQKDRP----RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPI 291
            V++  +     +VT  H+ K   EM   F    EAL NTVEIA +C+  ++       +
Sbjct: 233 TVAELKKEGKVFQVTGLHFTKP-EEMYRKFKGYEEALRNTVEIAEKCNVEIETADTRGYL 291

Query: 292 LPRF----IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
            P++    +++E  + +K E  E    +  GLE RL++         ++YR+RL +E++V
Sbjct: 292 FPKYQIPGLDREATEEEKVEYFE--KLSWEGLERRLSEKKDLPKSKIEEYRERLRYEIDV 349

Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
           I +M F  YFLIV DFI +AKKN IPVGP RGS AGS+ AY L ITD+DPL+  L+FERF
Sbjct: 350 IKQMGFPEYFLIVQDFINYAKKNGIPVGPARGSAAGSLVAYTLGITDVDPLQHGLIFERF 409

Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
           LNPDR+SMPD D+DFC + R +VI YV+ KYG + VAQIIT+  +++K  +RDV RAL  
Sbjct: 410 LNPDRISMPDIDVDFCMENRGKVIEYVKEKYGEQSVAQIITYNFMKSKMVIRDVARALGF 469

Query: 468 PYSQVDRLCKLIPNDPAHPVSL---QAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            YS+ DR+ K+I   P    +L   + +  +  FR+    D  V  L+++++KLEGL RH
Sbjct: 470 SYSEADRIAKMILPGPVQGSTLTIDENLEANPEFRKLYETDEKVRELIDLARKLEGLARH 529

Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
              HAAG+VI   PL + VP+Y D +     TQF+M  +E  GL+K DFLGLKTLT L  
Sbjct: 530 TGIHAAGVVIAPGPLDEFVPVYVD-KDGTKATQFDMNTLETLGLVKMDFLGLKTLTELNY 588

Query: 585 SLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
             + + +R G+ ++   +P DD   Y LL +  T G+FQLES GM+  L  ++PD  ++I
Sbjct: 589 MKNLIKERHGIDINFHKLPIDDQNVYRLLQSGKTTGVFQLESKGMQDLLVRLKPDKFDEI 648

Query: 644 IALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
           IA+++L+RPGP+ + +V  + +RK+G++ +      +  +L+ET G+ +  + ++ +A
Sbjct: 649 IAILALFRPGPLMSGMVDDFIDRKHGRKPVEYPFEEVKEILEETYGLCLTGDTLITMA 706



 Score =  214 bits (546), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 130/337 (38%), Positives = 196/337 (58%), Gaps = 13/337 (3%)

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            IYQEQ+M +A +LSG++++EAD LR+A+GKK  + M K K+RFISGA + G  K     +
Sbjct: 1106 IYQEQIMFMANILSGFTMAEADTLRKAIGKKKADVMAKMKDRFISGAVERGFDKVKIEKL 1165

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++ + KFA Y FNKSH+ AYA ++Y TA++KT+YP EF A  +++E +N  K      D 
Sbjct: 1166 WDDIEKFASYSFNKSHSTAYAYLTYWTAYIKTYYPEEFFAVKLSIE-NNDNKFLNLLLDM 1224

Query: 810  RQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLED 867
              F I+++PP +N    +F + D  +I + L+ IK VG  +A+ I+E    +  +  + D
Sbjct: 1225 EDFGIKLLPPDINRSRSNFSIEDKGKIRFGLSRIKNVGEQSAKLIVEERERNGDYKDIFD 1284

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
               R+DSK LN+RVLE+L+ AGA D  G  R  +L S+D      Q   + + +   ++F
Sbjct: 1285 IAERMDSKALNKRVLEALIKAGAFDFSGVDRGVMLASVDRALSAGQKAREKKASGQNSLF 1344

Query: 928  AH----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                  E G        E  S E   + FE E  VLGFY SGHPL+ YK  L+   IK  
Sbjct: 1345 GLMPQIEDGNGFAYENAEPIS-EKEKLNFEKE--VLGFYISGHPLNAYKKELQGYVIKI- 1400

Query: 984  EESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
              S+A  + G+ +R+A ++   ++KKTR GS +  +T
Sbjct: 1401 -NSLAERKTGDKVRIAGVISDIKKKKTRSGSTMAILT 1436


>gi|22537100|ref|NP_687951.1| DNA polymerase III DnaE [Streptococcus agalactiae 2603V/R]
 gi|25010983|ref|NP_735378.1| DNA polymerase III DnaE [Streptococcus agalactiae NEM316]
 gi|76788136|ref|YP_329656.1| DNA polymerase III DnaE [Streptococcus agalactiae A909]
 gi|77406846|ref|ZP_00783875.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae H36B]
 gi|77411007|ref|ZP_00787362.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae CJB111]
 gi|77413238|ref|ZP_00789435.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae 515]
 gi|22533960|gb|AAM99823.1|AE014234_13 DNA polymerase III, alpha subunit [Streptococcus agalactiae
           2603V/R]
 gi|23095383|emb|CAD46588.1| DNA polymerase III (alpha subunit) [Streptococcus agalactiae
           NEM316]
 gi|76563193|gb|ABA45777.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae A909]
 gi|77160698|gb|EAO71812.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae 515]
 gi|77162931|gb|EAO73887.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae CJB111]
 gi|77174540|gb|EAO77380.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae H36B]
          Length = 1034

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 313/965 (32%), Positives = 487/965 (50%), Gaps = 109/965 (11%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F  L   + YS ++  + L   + K  +     I I D +NL++A  F Q+A  A ++PI
Sbjct: 2   FAQLDTRTVYSFMDSLVDLKTYVSKSKSLGYQTIGILDHSNLYAAYHFIQEAQKANLRPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G   DI +++             ++    + ++T  GY+ L++L +        + S +
Sbjct: 62  VGFSFDIVVENR------------SIEVYCIAINTV-GYKNLLKLST-------AQMSEK 101

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           + L+ L E   EG+ ++                  V ++  L F  + G    VNL    
Sbjct: 102 MSLNLLTE-HLEGVQLI-------------LPYQDVLDQLNLPFDYVIG----VNLTSP- 142

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                      Q+ YT   P++A +   +  + D E   +L A+  + ++  KD    + 
Sbjct: 143 -----------QIPYTK--PIIAIDTVRYFQKNDIETLQMLHAIRDNVLL--KDAQYASK 187

Query: 251 DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQ--VHAPILPRFIEKECDDIQKEE 307
           +  LK   EM   F +  PEAL N   +    ++        PI  R I           
Sbjct: 188 NQELKPCQEMTLAFKERFPEALANLESLVENVAYHFDSDFKLPIFNREIP---------- 237

Query: 308 ENELRNKAVAGLEVR-LAQGAI-AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    AG E+R L Q  + +KG  +  Y++RL+ EL +I +M F  YFLIV D ++
Sbjct: 238 ---------AGEELRTLTQNNLKSKGLWSDAYQERLEKELTIIHKMGFDDYFLIVWDLLR 288

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           + +     +G GRGS AGS+ +YAL IT IDP++ +L+FERFLN +R SMPD DID    
Sbjct: 289 FGRSKGYYMGMGRGSAAGSLVSYALNITGIDPVKHNLIFERFLNEERYSMPDIDIDLPDI 348

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPA 484
            R E +RYV+N+YG    AQI+TF +  AK A+RDV +       ++  + K I   D  
Sbjct: 349 YRGEFLRYVRNRYGSMHSAQIVTFSTFGAKQAIRDVFKRFGASEYELTNITKKIHFRDNL 408

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             V  + +A    FR+   +     +  +I++++EG  R  S HAAG+V+ D  L+  +P
Sbjct: 409 TSVYNRNLA----FRQIIDSKIEYQKAYDIAKRIEGNPRQTSIHAAGVVMSDDLLTDHIP 464

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
           +      D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + + +  G+ + L  I  
Sbjct: 465 LKNG--EDMMITQYDASSVEDNGLLKMDFLGLRNLTFVQKMKEKVDKDYGISIQLETIDL 522

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
           +D ET  L     T GIFQ E SG    L  ++P+C ED++A  SL RPG  D    + N
Sbjct: 523 EDKETLKLFAAGQTKGIFQFEQSGAINLLRRIRPECFEDVVATTSLNRPGASDYTENFIN 582

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
           R+ GKEKI  + P+I P+L+ T G+++YQEQVMQIAQ  +G++L ++D+LRRAM KK  +
Sbjct: 583 RRFGKEKIDLVDPVIAPILQPTYGIMLYQEQVMQIAQTYAGFTLGKSDLLRRAMSKKNSK 642

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           EM K  + F+ GA   G  +  A  IFE +AKFA YGFN+SHA AY+ +++Q A+ K HY
Sbjct: 643 EMQKMSQSFLEGAVSKGHRQEDARLIFERMAKFAGYGFNRSHAFAYSALAFQLAYFKAHY 702

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              F    + +   N +    +  DA  F   I  PS+NT     ++   +IY  L  IK
Sbjct: 703 SDVFY--DIMINYSNSD----YLIDAIDFGFVIEKPSINTISYRDRIYKKKIYLGLKNIK 756

Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
           GV    A  I   S ++PF S+EDF  R+  +      +  L+  GA D F  +R ++  
Sbjct: 757 GVPNDLAYWI---SKNQPFQSIEDFLMRLPQQFQKSGFISPLIAIGAFDEFDNNRRKITS 813

Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
           +LD++  +         N+  ++FA    T    + +E FS   +S ++E EQ +LG   
Sbjct: 814 NLDSLFTFV--------NELGSLFA---DTSYHWLEVEDFS---NSEKYEMEQDILGVGI 859

Query: 964 SGHPL 968
           S HPL
Sbjct: 860 SPHPL 864


>gi|312278519|gb|ADQ63176.1| DNA polymeraDNA polymerase III alphase III alpha subunit
            [Streptococcus thermophilus ND03]
          Length = 1036

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 312/1028 (30%), Positives = 511/1028 (49%), Gaps = 106/1028 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS ++  + LN  + +       +I + D +NL++A  F+Q A   G++P+
Sbjct: 2    FAQLDTKSVYSFMDSVVDLNTYVKRAKELGYQSIGLMDRDNLYAAYHFAQLAIRNGLRPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + ++  +         K PF       LL    +GY+ L++L +    L  G++   
Sbjct: 62   IGTEANLFYEGR-------KIPFR------LLAKNNQGYKNLMKLATE---LSSGQREFT 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                +L +I     ++L      P                        G  +++ +   R
Sbjct: 106  YFSDYLNDIA----LILPSEDWEP--------------------GMSLGSEVFIGV---R 138

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D  +E          + P+V  +   +    D      L A++ +  +S+     + P
Sbjct: 139  PEDAGKE---------FDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEVS---ICP 186

Query: 251  -DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +  L +  EM   +S LPEAL N  ++    S+    +   LPRF  +E   +     +
Sbjct: 187  MNQLLFSAKEMEEAYSKLPEALNNLNQLVSDVSYQFDTNLK-LPRF-NREMPAV-----D 239

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            +LR  A +GL+        +K      Y++RLD EL++I +M F  YFLIV D +++ + 
Sbjct: 240  QLRQLAQSGLD--------SKALREPAYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRS 291

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AY L IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 292  RGYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNEERYSMPDIDIDLPDIYRGE 351

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAHPVS 488
             + YV+++YG +  AQI+TF +  AK A+RDV +       ++ +L K I   D    V 
Sbjct: 352  FLHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKISFRDTLTTVY 411

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             + ++    FR+         R  EI++ +EG  R  S HAAGIV+ D  L+  +P+   
Sbjct: 412  EKNMS----FRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--K 465

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + L + +G+ +D+  I  +D +
Sbjct: 466  AGEDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGIAIDIKSIDLEDSQ 525

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  +  T GIFQ E +G    L+ ++P   E+++A  SL RPG  D    +  RK G
Sbjct: 526  TLALFASGKTKGIFQFEQAGAINLLKRIKPAKFEEVVATTSLNRPGASDYTDNFVARKYG 585

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEK+  I P++ P+L+ T G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK   EM K
Sbjct: 586  KEKVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKDANEMSK 645

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
              E+F+ G+ + G    +A  +F ++ KFA YGFNKSHA AY+ +++Q A+ KTHYP  F
Sbjct: 646  MSEQFMEGSRQLGRDPQVAKRLFSMITKFAGYGFNKSHAYAYSALAFQLAYFKTHYPQIF 705

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVG 846
                +     +      + +DA +    +    +N  P +D K+ D +I   L  IKG+ 
Sbjct: 706  YDVMLNYSSSD------YIRDAIENGFSLASLDINRIPYMD-KISDGKIVLGLKTIKGLP 758

Query: 847  TTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
               A  I+E    +  + S+EDF +R+ SK     +L  L+  G  D F  +R +++ +L
Sbjct: 759  RDFALWIIEDRQQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDRFEPNRRKIIGNL 818

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             N+  +         N+  ++FA    ++   +  E +S    + R+  EQ +LG   S 
Sbjct: 819  SNLFTF--------VNELGSLFAESSYSW---VEYEDYS---QTERYSIEQDLLGIGLST 864

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HPL     + +KM  + Y+        +   +   + S +  +T+KG ++ +++  +   
Sbjct: 865  HPLH----LAQKMASRPYQPISELTLNSKATVLVQLESVRIIRTKKGDQMAFLSVFDGVN 920

Query: 1026 EYEANFFP 1033
            + +   FP
Sbjct: 921  KLDVTLFP 928


>gi|312601529|gb|ADQ90784.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 168]
          Length = 981

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 247/643 (38%), Positives = 375/643 (58%), Gaps = 29/643 (4%)

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
           ++ RL +E   I ++KF+ YFLI+ DF++WA+KN I +GPGRGS +GS+ AY L IT ++
Sbjct: 258 WKARLQYEYETICKLKFTNYFLIIWDFLKWARKNEILIGPGRGSASGSLVAYLLEITSVN 317

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL++ L+FERFLNP R++MPD DID    RR EVI Y+  KYG +  A IITF +L AK+
Sbjct: 318 PLKYDLIFERFLNPQRITMPDIDIDIQDTRRQEVIDYLFEKYGPDHCATIITFSTLAAKS 377

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD--DSRFR---------EARLAD 505
             RD+ +   +P  Q+++  KLIPN+     +L  + D   S FR         +A    
Sbjct: 378 VFRDISKTFGIPEIQINKNAKLIPNN----ANLSQLYDQKSSEFRRLIEKGDNFKAENNS 433

Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
               ++ +IS  LEG+ R +STHAAGIV+   P+++LVP++ + + +L   Q+  ++IE 
Sbjct: 434 EIYKKIYKISAFLEGMPRQSSTHAAGIVLSKIPITKLVPVH-NSKENLNQIQYAAEFIED 492

Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
             L+K D LGLK LT++   L  +   G K+  + +P  +  T +LL+   T GIFQLES
Sbjct: 493 FSLLKIDLLGLKNLTIVANILAKINSDGHKITFNQLPISEDSTNNLLSQGKTSGIFQLES 552

Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY--NNRKNGKEKIVSIHPLIDPMLK 683
            GM  +++ +    I DIIA++SL+RPGPI  I  Y  N  +N  EKI    P  D +++
Sbjct: 553 PGMTASIKKIGVSSINDIIAIISLFRPGPIQQIPTYAKNKERNNWEKIF---PEYDKIVE 609

Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            T GVIIYQEQ+MQI Q+++G++L +AD++R A+ KK + ++DK KE FI   +  G   
Sbjct: 610 STFGVIIYQEQIMQICQVVAGFNLEQADIIRVAISKKDETKLDKIKENFIKNGTNLGYEP 669

Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
            +  +I+ L+ KF+DYGFNK+HA AYA ++Y+ A++K  YP  F    ++ E     KIK
Sbjct: 670 KLVEHIYNLIYKFSDYGFNKAHAVAYATLAYKMAYLKAKYPAYFFVELISNENGAQAKIK 729

Query: 804 KFCQDARQFNIQIMPPSVN--TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADK 860
           K+  +AR F  +I  P++N  T    F  G N I+  L  +KG+GT   + I+ E S + 
Sbjct: 730 KYVGEARNFGFKIHRPNINFSTENAVFDKGKNTIFLPLLMVKGLGTIAIKTIIDERSKNG 789

Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            + +  DF  R+     ++  +E L+FA  L  FG ++  L  + + +  +A +V     
Sbjct: 790 IYKNFLDFIKRMKLVNFSKVAIEKLIFANTLSDFG-NQETLAHNFELLWNHASFV---LN 845

Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
           +K  N+         D   LEK    N    +ENE + LG  F
Sbjct: 846 DKDGNLVLTTDNFGLDLEFLEKIPY-NQEKNYENEVKYLGMSF 887


>gi|72080910|ref|YP_287968.1| DNA polymerase III DnaE [Mycoplasma hyopneumoniae 7448]
          Length = 989

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 246/641 (38%), Positives = 374/641 (58%), Gaps = 25/641 (3%)

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
           ++ RL +E   I ++KF+ YFLI+ DF++WA+KN I +GPGRGS +GS+ AY L IT ++
Sbjct: 266 WKARLQYEYETICKLKFTNYFLIIWDFLKWARKNEILIGPGRGSASGSLVAYLLEITSVN 325

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL++ L+FERFLNP R++MPD DID    RR EVI Y+  KYG +  A IITF +L AK+
Sbjct: 326 PLKYGLIFERFLNPQRITMPDIDIDIQDTRRQEVIDYLFEKYGPDHCATIITFSTLAAKS 385

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR---------EARLADPS 507
             RD+ +   +P  Q+++  KLIPN+    +S       S FR         +A      
Sbjct: 386 VFRDISKIFGIPEIQINKNAKLIPNNAN--LSQLYNQKSSEFRRLIEKGDNFKAENNSEI 443

Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
             ++ +IS  LEG+ R +STHAAGIV+   P+++LVP++ + + +L   Q+  ++IE   
Sbjct: 444 YKKIYKISAFLEGMPRQSSTHAAGIVLSKIPITKLVPVH-NSKENLNQIQYAAEFIEDFS 502

Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
           L+K D LGLK LT++   L  +   G K+  + +P  ++ T +LL+   T GIFQLES G
Sbjct: 503 LLKIDLLGLKNLTIVANILAKINSDGHKITFNQLPISENSTNNLLSQGKTSGIFQLESPG 562

Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY--NNRKNGKEKIVSIHPLIDPMLKET 685
           M  +++ +    I DIIA++SL+RPGPI  I  Y  N  +N  EKI    P  D +++ T
Sbjct: 563 MTASIKKIGVSSINDIIAIISLFRPGPIQQIPTYAKNKERNNWEKIF---PEYDKIVEST 619

Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
            GVIIYQEQ+MQI Q+++G++L +AD++R A+ KK + ++DK KE FI   +  G    +
Sbjct: 620 FGVIIYQEQIMQICQVVAGFNLEQADIIRVAISKKDETKLDKIKENFIKNGTNLGYEPKL 679

Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
             +I+ L+ KF+DYGFNK+HA AYA ++Y+ A++K  YP  F    ++ E     KIKK+
Sbjct: 680 VEHIYNLIYKFSDYGFNKAHAVAYATLAYKMAYLKAKYPAYFFVELISNENGAQAKIKKY 739

Query: 806 CQDARQFNIQIMPPSVN--TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPF 862
             +AR F  +I  P++N  T    F  G N I+  L  +KG+GT   + I+ E S +  +
Sbjct: 740 VGEARNFGFKIHRPNINFSTENAVFDKGKNTIFLPLLMVKGLGTIAIKTIIDERSKNGIY 799

Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
            +  DF  R+     ++  +E L+FA  L  FG ++  L  + + +  +A +V     +K
Sbjct: 800 KNFLDFIKRMKLVNFSKVAIEKLIFANTLSDFG-NQETLAHNFELLWNHASFV---LNDK 855

Query: 923 HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             N+         D   LEK    N    +ENE + LG  F
Sbjct: 856 DGNLVLTTDNFGLDLEFLEKIPY-NQEKNYENEVKYLGMSF 895



 Score = 39.3 bits (90), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/74 (22%), Positives = 38/74 (51%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          L K+   ++L   + Y+ L   + L++++     +    + ITD N++F   +F +    
Sbjct: 5  LTKNMQLINLHTRTEYTFLSSTIKLDSLIKFALENNLKTLVITDLNSMFGVPKFYKLCKQ 64

Query: 65 AGIQPIIGCQLDID 78
            I P+IG +++I+
Sbjct: 65 NKINPVIGLEIEIE 78


>gi|116627933|ref|YP_820552.1| DNA polymerase III DnaE [Streptococcus thermophilus LMD-9]
 gi|116101210|gb|ABJ66356.1| DNA polymerase III catalytic subunit, DnaE type [Streptococcus
            thermophilus LMD-9]
          Length = 1036

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 312/1028 (30%), Positives = 511/1028 (49%), Gaps = 106/1028 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS ++  + LN  + +       +I + D +NL++A  F+Q A   G++P+
Sbjct: 2    FAQLDTKSVYSFMDSVVDLNTYVKRAKELGYQSIGLMDRDNLYAAYHFAQLAIRNGLRPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + ++  +         K PF       LL    +GY+ L++L +    L  G++   
Sbjct: 62   IGTEANLFYEGR-------KIPFR------LLAKNNQGYKNLMKLATE---LSSGQREFT 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                +L +I     ++L      P                        G  +++ +   R
Sbjct: 106  YFSDYLNDIA----LILPSEDWEP--------------------GMSLGSEVFIGV---R 138

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D  +E          + P+V  +   +    D      L A++ +  +S+     + P
Sbjct: 139  PEDAGKE---------FDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEVS---ICP 186

Query: 251  -DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +  L +  EM   +S LPEAL N  ++    S+    +   LPRF  +E   +     +
Sbjct: 187  MNQLLFSAKEMEEAYSKLPEALNNLNQLVSDVSYQFDTNLK-LPRF-NREMPAV-----D 239

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            +LR  A +GL+        +K      Y++RLD EL++I +M F  YFLIV D +++ + 
Sbjct: 240  QLRQLAQSGLD--------SKALREPAYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRS 291

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AY L IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 292  RGYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNEERYSMPDIDIDLPDIYRSE 351

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAHPVS 488
             + YV+++YG +  AQI+TF +  AK A+RDV +       ++ +L K I   D    V 
Sbjct: 352  FLHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKISFRDTLTTVY 411

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             + ++    FR+         R  EI++ +EG  R  S HAAGIV+ D  L+  +P+   
Sbjct: 412  EKNMS----FRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--K 465

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + L + +G+ +D+  I  +D +
Sbjct: 466  AGEDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGIAIDIKSIDLEDSQ 525

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  +  T GIFQ E +G    L+ ++P   E+++A  SL RPG  D    +  RK G
Sbjct: 526  TLALFASGKTKGIFQFEQAGAINLLKRIKPAKFEEVVATTSLNRPGASDYTDNFVARKYG 585

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEK+  I P++ P+L+ T G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK   EM K
Sbjct: 586  KEKVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKDANEMSK 645

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
              E+F+ G+ + G    +A  +F ++ KFA YGFNKSHA AY+ +++Q A+ KTHYP  F
Sbjct: 646  MSEQFMEGSRQLGRDPQVAKRLFSMITKFAGYGFNKSHAYAYSSLAFQLAYFKTHYPQIF 705

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVG 846
                +     +      + +DA +    +    +N  P +D K+ D +I   L  IKG+ 
Sbjct: 706  YDVMLNYSSSD------YIRDAIENGFSLASLDINRIPYMD-KISDGKIVLGLKTIKGLP 758

Query: 847  TTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
               A  I+E    +  + S+EDF +R+ SK     +L  L+  G  D F  +R +++ +L
Sbjct: 759  RDFALWIIEDRQQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDRFEPNRRKIIGNL 818

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             N+  +         N+  ++FA    ++   +  E +S    + R+  EQ +LG   S 
Sbjct: 819  SNLFTF--------VNELGSLFAESSYSW---VEYEDYS---QTERYSIEQDLLGVGLST 864

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HPL     + +KM  + Y+        +   +   + S +  +T+KG ++ +++  +   
Sbjct: 865  HPLH----LAQKMASRPYQPISELTLNSKATVLVQLESVRIIRTKKGDQMAFLSVFDGVN 920

Query: 1026 EYEANFFP 1033
            + +   FP
Sbjct: 921  KLDVTLFP 928


>gi|13357977|ref|NP_078251.1| DNA polymerase III DnaE [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762126|ref|YP_001752499.1| DNA polymerase III DnaE [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|183508625|ref|ZP_02958129.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|186701626|ref|ZP_02971330.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|14194693|sp|Q9PQ74|DPO3A_UREPA RecName: Full=DNA polymerase III subunit alpha
 gi|11356840|pir||D82895 DNA polymerase III alpha chain 2 UU415 [imported] - Ureaplasma
           urealyticum
 gi|6899403|gb|AAF30826.1|AE002138_13 DNA polymerase III alpha chain 2 [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827703|gb|ACA32965.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|182676084|gb|EDT87989.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|186700858|gb|EDU19140.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 969

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 300/894 (33%), Positives = 469/894 (52%), Gaps = 96/894 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F++L VHS YSLL   LS+++++     ++QP + +TD NN++  +EF  KA A  + PI
Sbjct: 2   FINLNVHSHYSLLNSTLSIDDLIKYALDNKQPYVCLTDLNNMYGCIEFYDKAKAHNLTPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG          L+   Q  T          LV+ A+ Y   ++L+         K S  
Sbjct: 62  IG----------LEFEYQNAT----------LVAYAKNYNGYLKLI---------KWSSW 92

Query: 131 ICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
           I  S   EI    + LI++    +       F+ +        +  + +F    Y N   
Sbjct: 93  IMTSKEFEIQDDFDDLIIVCKKGTIVFKSPNFYQTHDQNAPNAIALQSVF----YAN--- 145

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                  +  ++V LA      ++A  N L L  ED+                 K+    
Sbjct: 146 -------KNDKIVFLA------MLAIKNDLKL--EDF-----------------KNCCDF 173

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH-APILPRFIEKECDDIQKEE 307
             +H+L N +   S FS  P AL N  ++       +Q+H  PI     +K+   I  E 
Sbjct: 174 DNNHFL-NDNLAQSFFS--PIALNNLNKVLNELK--VQIHDLPINIPVYDKQNSIISSEI 228

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              L+   ++GL+ RL       G   + Y QRL +EL+VI   +F  YFLIV DFI +A
Sbjct: 229 ---LKQLCISGLKKRLNAN---DGQVNKIYVQRLKYELDVINEKQFDDYFLIVYDFINFA 282

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           K N I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D   ++R
Sbjct: 283 KSNGIIVGPGRGSAAGSLVAYCLHITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKR 342

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           D VI Y+  KYG++ VA I+TF  L+AK A+RDVGR L +    +D++CK I  +    +
Sbjct: 343 DLVIEYLFEKYGNDHVAYILTFQRLKAKMAIRDVGRILGIDLKVIDKICKNIKPEYDEDL 402

Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L AI  ++  +E  L       L EIS+KL    R   THAAGI++ D  +S ++P+  
Sbjct: 403 DL-AIKKNTILKEMYLLHK---ELFEISKKLINAPRQIGTHAAGIILSDSLISNIIPIQL 458

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
            + +D P++Q++M+++E+ GLIK D LGLK LT++   L  + + +  K+DL  I ++D 
Sbjct: 459 GI-NDRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIYENQNKKIDLFNINYNDK 517

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             +  L    T GIFQLES GM++ L  ++P  IEDI  + +L+RPGP  NI  +  R+ 
Sbjct: 518 FVFEDLAKARTNGIFQLESPGMKKVLLKVKPQNIEDISIVSALFRPGPQQNIKTFVERRF 577

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            +E+    +     +L+ T G+I+YQEQV+++ + ++ + ++ +D  RRA+ KK ++ + 
Sbjct: 578 KREEFSYWNEATRKILEPTYGIIVYQEQVIELVKTIANFDIATSDNFRRAISKKDEKILI 637

Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
           + K+ FI+GA  N   + +   IFE +  FA YGFN SH+ AY+ ISY  A++K +Y +E
Sbjct: 638 QLKDDFINGALNNNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYTLE 697

Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKG 844
           FL+  ++    + +K+  +  +A++FNI I  P +     DF +   +  I +    IKG
Sbjct: 698 FLSVLLSHTSASKDKLLSYLNEAKEFNISIKGPDIQYFSNDFVIDTQKQIIRFGFKTIKG 757

Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKK---LNRRVLESLVFAGALDCFG 895
            G    + I  A       +L D+ S +D+ K   ++ + +E L+  G  D FG
Sbjct: 758 FGDELLKKIKSALQKS---TLSDYISYIDALKKGNVSLKNIEILIRVGTFDSFG 808


>gi|144575533|gb|AAZ53945.2| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 7448]
          Length = 981

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 246/641 (38%), Positives = 374/641 (58%), Gaps = 25/641 (3%)

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
           ++ RL +E   I ++KF+ YFLI+ DF++WA+KN I +GPGRGS +GS+ AY L IT ++
Sbjct: 258 WKARLQYEYETICKLKFTNYFLIIWDFLKWARKNEILIGPGRGSASGSLVAYLLEITSVN 317

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL++ L+FERFLNP R++MPD DID    RR EVI Y+  KYG +  A IITF +L AK+
Sbjct: 318 PLKYGLIFERFLNPQRITMPDIDIDIQDTRRQEVIDYLFEKYGPDHCATIITFSTLAAKS 377

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR---------EARLADPS 507
             RD+ +   +P  Q+++  KLIPN+    +S       S FR         +A      
Sbjct: 378 VFRDISKIFGIPEIQINKNAKLIPNNAN--LSQLYNQKSSEFRRLIEKGDNFKAENNSEI 435

Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
             ++ +IS  LEG+ R +STHAAGIV+   P+++LVP++ + + +L   Q+  ++IE   
Sbjct: 436 YKKIYKISAFLEGMPRQSSTHAAGIVLSKIPITKLVPVH-NSKENLNQIQYAAEFIEDFS 494

Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
           L+K D LGLK LT++   L  +   G K+  + +P  ++ T +LL+   T GIFQLES G
Sbjct: 495 LLKIDLLGLKNLTIVANILAKINSDGHKITFNQLPISENSTNNLLSQGKTSGIFQLESPG 554

Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY--NNRKNGKEKIVSIHPLIDPMLKET 685
           M  +++ +    I DIIA++SL+RPGPI  I  Y  N  +N  EKI    P  D +++ T
Sbjct: 555 MTASIKKIGVSSINDIIAIISLFRPGPIQQIPTYAKNKERNNWEKIF---PEYDKIVEST 611

Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
            GVIIYQEQ+MQI Q+++G++L +AD++R A+ KK + ++DK KE FI   +  G    +
Sbjct: 612 FGVIIYQEQIMQICQVVAGFNLEQADIIRVAISKKDETKLDKIKENFIKNGTNLGYEPKL 671

Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
             +I+ L+ KF+DYGFNK+HA AYA ++Y+ A++K  YP  F    ++ E     KIKK+
Sbjct: 672 VEHIYNLIYKFSDYGFNKAHAVAYATLAYKMAYLKAKYPAYFFVELISNENGAQAKIKKY 731

Query: 806 CQDARQFNIQIMPPSVN--TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPF 862
             +AR F  +I  P++N  T    F  G N I+  L  +KG+GT   + I+ E S +  +
Sbjct: 732 VGEARNFGFKIHRPNINFSTENAVFDKGKNTIFLPLLMVKGLGTIAIKTIIDERSKNGIY 791

Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
            +  DF  R+     ++  +E L+FA  L  FG ++  L  + + +  +A +V     +K
Sbjct: 792 KNFLDFIKRMKLVNFSKVAIEKLIFANTLSDFG-NQETLAHNFELLWNHASFV---LNDK 847

Query: 923 HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             N+         D   LEK    N    +ENE + LG  F
Sbjct: 848 DGNLVLTTDNFGLDLEFLEKIPY-NQEKNYENEVKYLGMSF 887


>gi|171920472|ref|ZP_02931773.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|171902930|gb|EDT49219.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
          Length = 969

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 299/894 (33%), Positives = 468/894 (52%), Gaps = 96/894 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F++L VHS YSLL   LS+++++     ++QP + +TD NN++  +EF  KA A  + PI
Sbjct: 2   FINLNVHSHYSLLNSTLSIDDLIKYALDNKQPYVCLTDLNNMYGCIEFYDKAKAHNLTPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG + +           Q  T          LV+ A+ Y   ++L+         K S  
Sbjct: 62  IGLEFEY----------QNAT----------LVAYAKNYNGYLKLI---------KWSSW 92

Query: 131 ICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
           I  S   EI    E LI++          + F+ +        +  + +F    Y N   
Sbjct: 93  IMTSKEFEIQDDFEDLIIVCKKGDIVFKNSNFYQTHDQNAPNAIALQSVF----YAN--- 145

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                  +  ++V LA      ++A  N L L  ED+                 K+    
Sbjct: 146 -------KSDKIVFLA------MLAIKNDLKL--EDF-----------------KNCCDF 173

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH-APILPRFIEKECDDIQKEE 307
             +H+L +     S FS  P AL N  ++       +Q+H  PI     +K+   I  E 
Sbjct: 174 DNNHFLTDYLAQ-SFFS--PIALNNLNKVLNELK--VQIHDLPINIPVYDKQNSIISSEI 228

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              L+   ++GL+ RL       G   + Y QRL +EL+VI   +F  YFLIV DFI +A
Sbjct: 229 ---LKQLCISGLKKRLNA---HDGQVNKIYVQRLKYELDVINEKQFDDYFLIVYDFINFA 282

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           K N I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D   ++R
Sbjct: 283 KSNGIIVGPGRGSAAGSLVAYCLHITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKR 342

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           D VI Y+  KYG++ VA I+TF  L+AK A+RDVGR L +    +D++CK I  +    +
Sbjct: 343 DLVIEYLFEKYGNDHVAYILTFQRLKAKMAIRDVGRILGIDLKVIDKICKNIKPEYDEDL 402

Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L AI  ++  +E  L       L EIS+KL    R   THAAGI++ D  +S ++P+  
Sbjct: 403 DL-AIKKNTILKEMYLLHK---ELFEISKKLINAPRQIGTHAAGIILSDSLISNIIPIQL 458

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
            + +D P++Q++M+++E+ GLIK D LGLK LT++   L  + + +  K+DL  I ++D 
Sbjct: 459 GI-NDRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIHENQNKKIDLFNIDYNDK 517

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             +  L    T GIFQLES GM++ L  ++P  IEDI  + +L+RPGP  NI  +  R+ 
Sbjct: 518 FVFEDLAKARTNGIFQLESPGMKKVLLKVKPHNIEDISIVSALFRPGPQQNIKTFVERRF 577

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            +E+    +     +L+ T G+I+YQEQV+++ + ++ + ++ +D  RRA+ KK ++ + 
Sbjct: 578 KREEFSYWNEATRKILEPTYGIIVYQEQVIELVKTIANFDIATSDNFRRAISKKDEKILI 637

Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
           + K+ FI+GA  N   + +   IFE +  FA YGFN SH+ AY+ ISY  A++K +Y +E
Sbjct: 638 QLKDDFINGALNNNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYTLE 697

Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKG 844
           FL+  ++    + +K+  +  +A++FNI I  P +     DF +   +  I +    IKG
Sbjct: 698 FLSVLLSHTSASKDKLLSYLNEAKEFNISIKGPDIQYFSNDFVIDTQKQIIRFGFKTIKG 757

Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKK---LNRRVLESLVFAGALDCFG 895
            G    + I  A       +L D+ S +D+ K   ++ + +E L+  G  D FG
Sbjct: 758 FGDELLKKIKSALQKS---TLSDYISYIDALKKGNVSLKNIEILIRVGTFDSFG 808


>gi|322392240|ref|ZP_08065701.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus peroris
            ATCC 700780]
 gi|321144775|gb|EFX40175.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus peroris
            ATCC 700780]
          Length = 1033

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 318/1031 (30%), Positives = 514/1031 (49%), Gaps = 121/1031 (11%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             L   + YS +E  +S+   +         ++ I D +NL+ A  F ++    GIQP++G
Sbjct: 4    QLDTKTVYSFMESMISIKRYVSLGKEYGYSSLGIMDEDNLYGAYYFIKECQKQGIQPLLG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             ++ +  +D                ++ LL  +  GYQ L++L +   L   GK+     
Sbjct: 64   LEMTVHHKDEWL-------------NLRLLALSNRGYQNLMKLST---LKMTGKKEWTDF 107

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
             S+L++I      ++    SG  D    ++           +  ++ D L  N       
Sbjct: 108  SSYLEDI-----CVIVPYYSGIADLDLGYD----------YYIGVYPDTLQSNF------ 146

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD----RPRV 248
                 SQ +       LPL   N+      ED EA  +L A+  +  + + D    +  +
Sbjct: 147  -----SQPI-------LPLYRVNS---FEPEDLEALQMLKAIKENVTLREVDVQSQQGLL 191

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQKEE 307
             P   L+            P+ALEN   + ++ S+  ++ + + LPRF      + ++  
Sbjct: 192  LPVERLEQ-----PFLEKFPQALENLERVTKKTSY--EIDSSLKLPRF------NPERPA 238

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              ELR +A+ GL+         KG   QDY+ RL+ EL+VI  M F  YFL+V D +++ 
Sbjct: 239  VEELRERAIQGLK--------QKGLWNQDYQARLEDELSVIHEMGFDDYFLVVWDLLRFG 290

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     +G GRGS  GS+ AYAL IT IDP+  +L+FERFLN +R +MPD DID     R
Sbjct: 291  RSQGYYMGMGRGSAVGSLVAYALDITGIDPVAKNLIFERFLNRERYTMPDIDIDIPDIYR 350

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I        
Sbjct: 351  PEFIRYVRDRYGSIHAAQIVTYSTFGAKQAIRDVFKRYGVPEYELTAITKKIGFKDTLTT 410

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            + +    +  FR+         +  EI++K+EG  R  S HAAG+VI D+ L+  +P+  
Sbjct: 411  AYEG---NLGFRQLIQGKIEYQKAFEIAKKIEGYPRQTSIHAAGVVISDKNLTDYIPL-- 465

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT  QK  + L + +G+ + +  I  +D 
Sbjct: 466  KYGEDMLITQYDAHGVEGNGLLKMDFLGLRNLTFAQKMQELLFETQGIPLRIEDIDLEDK 525

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ET  L     T GIFQ E  G  + L+ ++P+  ED++A  SL RPG  D I  +  RK+
Sbjct: 526  ETLALFAAGKTKGIFQFEQPGAIRLLKRVKPESFEDVVATTSLNRPGASDYIDNFVARKH 585

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GKEK+  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK   EM 
Sbjct: 586  GKEKVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRYAGFSLGKADILRRAMGKKNAAEMH 645

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + +E FI GA +NG SK  A  +F ++ KFA YGFN+SHA AYA +++Q A+ KTHYP  
Sbjct: 646  RMEESFIQGALENGHSKEQAQEVFAVMEKFAGYGFNRSHAYAYAALAFQLAYFKTHYPAI 705

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F    +     +      +  DA +   ++ P S+NT     K+ D  +Y  L +IKG+ 
Sbjct: 706  FYQVMLNYASGD------YILDALEMGFKLTPFSINTVPYQDKLTDKTVYLGLKSIKGMS 759

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               +  I+E   ++PF S+EDF +R+        +L  LV  G  D F  +R ++L +L 
Sbjct: 760  RDFSYWIIE---NRPFSSVEDFITRLPKNYQKLSLLTPLVEVGLFDGFDKNRQKILANLP 816

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             +  +         ++  ++FA    +++D    E FS   +  +F+ EQ  LG   S H
Sbjct: 817  TLFIF--------VDELGSLFADSSYSWTDT---EDFS---NIEKFKKEQEWLGVGISQH 862

Query: 967  PLDVYK-----PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            PL +       PI+    +   + +   +   +IR+          +T+KG  + ++  S
Sbjct: 863  PLLILAKNPLYPIVSLSELSEGQTATVLVEIQSIRVI---------RTKKGENMAFLKVS 913

Query: 1022 EPAKEYEANFF 1032
            +     E   F
Sbjct: 914  DSKTNLEVTVF 924


>gi|322372809|ref|ZP_08047345.1| DNA polymerase III, alpha subunit [Streptococcus sp. C150]
 gi|321277851|gb|EFX54920.1| DNA polymerase III, alpha subunit [Streptococcus sp. C150]
          Length = 1036

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 312/1027 (30%), Positives = 508/1027 (49%), Gaps = 104/1027 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS ++  + L + + +       A+ + D +NL++A  F+Q A   G++P+
Sbjct: 2    FAQLDTKSVYSFMDSVVDLPSYVKRAKELGYQALGLMDRDNLYAAYHFAQLATKNGLRPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG      M+ NL    +G+     + +  LL    +GY+ L++L +    L  G++   
Sbjct: 62   IG------MEANL--VYEGR-----MIAFRLLAKNNQGYKNLMKLATE---LSSGQREFT 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               ++L EI     ++L      P                       F   +++ +   R
Sbjct: 106  ALSNYLNEIA----LILPSEEWEP--------------------GMAFESDVFIGV---R 138

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D  +E          + P++  +   +    D     +L A++ +  +S+     + P
Sbjct: 139  PEDAGKE---------FDYPVLPLHTVRYFDNVDRSTIQMLHAISQNVSLSEAS---ICP 186

Query: 251  -DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +  L +  EM S  SD+P+AL N  ++    ++        LPRF             +
Sbjct: 187  MNQLLFSPQEMESAHSDIPDALNNLDQLVSDITYQFDTELK-LPRFNRDML------AVD 239

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            +LR  A  GLE +    ++        Y++RLD EL VI +M F  YFLIV D +++ + 
Sbjct: 240  QLRQLAQDGLETKELTASV--------YQERLDKELAVIHQMGFDDYFLIVWDLLRFGRS 291

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R +MPD DID     R E
Sbjct: 292  RGYYMGMGRGSAAGSLVAYALDITGIDPVKNDLLFERFLNEERYTMPDIDIDLPDIYRSE 351

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             + YV+++YG    AQI+TF +  AK A+RDV +       ++ +L K I    +   +L
Sbjct: 352  FLHYVRDRYGSMHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKI----SFRDNL 407

Query: 490  QAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             ++ + +  FR+     P   R  EI++ +EG  R  S HAAGIV+ D  L++ +P+   
Sbjct: 408  TSVYEKNMSFRQLINQRPEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTEHIPL--K 465

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + L + +GV +D+  I  +D +
Sbjct: 466  AGEDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGVVIDIKSIDLEDSQ 525

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  +  T GIFQ E +G    L+ ++P   E+++A  SL RPG  D I  +  RK G
Sbjct: 526  TLALFASGKTKGIFQFEQAGAINLLKRIKPSQFEEVVATTSLNRPGASDYIDNFIARKYG 585

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEK+  I P++  +L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM K
Sbjct: 586  KEKVDLIDPVVAHILEPTYGIMLYQEQVMQIAQVFAGFTLGKADLLRRAMSKKDANEMSK 645

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
              E F+SG+ + G +  IA  +F ++AKFA YGFN+SHA AY+ +++Q A+ K+HYP  F
Sbjct: 646  MSEAFMSGSQQLGRNPQIAERLFSMMAKFAGYGFNRSHAYAYSALAFQLAYFKSHYPQVF 705

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
                +     +      + +DA      +    +N      K+ D +I   L  IKG   
Sbjct: 706  YDVMLNYSSSD------YIKDAIGNGFSLARLDINRIPFHDKISDGKIVLGLKTIKGFPR 759

Query: 848  TTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
              A  I+E   +   + S+EDF +R+  K     VL  LV  G  D F  +R +++ +L 
Sbjct: 760  DFALWIIEDRKENGKYVSIEDFLTRIPKKYQKVEVLTPLVHIGLFDIFETNRQKIIGNLS 819

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
            N+  +         N+  ++FA    ++ D     +        R+  EQ +LG   S H
Sbjct: 820  NLFTF--------VNELGSLFAESSYSWVDYDDYSQID------RYNMEQELLGVGLSPH 865

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            PL     + +KM    Y+        +   +   + S +  +T+KG R+ +++ S+   +
Sbjct: 866  PLH----LAQKMATHPYQPISDLTVNSKATVLVQLESVRIIRTKKGDRMAFLSVSDGINK 921

Query: 1027 YEANFFP 1033
             +   FP
Sbjct: 922  LDVTLFP 928


>gi|50365400|ref|YP_053825.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
 gi|50363956|gb|AAT75941.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
          Length = 992

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 263/672 (39%), Positives = 385/672 (57%), Gaps = 34/672 (5%)

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           L+ K +AGL+       +      ++Y QRL+ EL++I +  F+ YFLIV D++ +A++N
Sbjct: 238 LKQKCLAGLQHYFKN--VKHEPIKEEYIQRLNHELSIIEKTGFADYFLIVHDYVSFARRN 295

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
           +I VGPGRGS AGS+ ++ L IT IDP+ ++LLFERFLNP+R++MPD DIDF  +RRDEV
Sbjct: 296 DIIVGPGRGSAAGSLVSFLLRITTIDPIEYNLLFERFLNPERITMPDIDIDFQDNRRDEV 355

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
           I Y+  KYG   VA I+T+ ++  K+A RD  R  Q+  + V+ + K + +D    +S  
Sbjct: 356 IEYLFEKYGKYNVATIVTYQTIAFKSAFRDACRIYQIDMNLVNLITKSLTDD---YLSFD 412

Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            I    +  +          + ++ +KL G  R   THAAGI+I D  L  ++P+ R   
Sbjct: 413 EILKTQKLIKEYSEKAEFKNIFKLVEKLIGCPRQTGTHAAGIIISDTDLRNVLPI-RQGL 471

Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IPFDDHET 608
           + +  TQF+M ++E  GLIK D LGL+ LT L++ LD L ++    D +L  I  +D +T
Sbjct: 472 NGIYQTQFDMNYLEDIGLIKMDLLGLRNLTTLKEILD-LVKKNHNEDFTLSKIDLNDAKT 530

Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
           + +L    T GIFQLES GM   +  M+ + I DI A  SLYRPGP + I  Y N KN +
Sbjct: 531 FKILREGNTTGIFQLESQGMTNLIIDMKVNNINDISAASSLYRPGPQEMIPDYINNKNNR 590

Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            ++  I   +  +L  T GVI+YQEQVMQI QL+  +SL +AD++RRAMGKK  E M + 
Sbjct: 591 -RVSLIDKSLANILLPTYGVIVYQEQVMQILQLVGNFSLGKADIVRRAMGKKQIEYMMEV 649

Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
           K+ FI+ A  N  S   AV I+  + +FA YGFNKSHA AY+ I Y  AW K HYP EF 
Sbjct: 650 KDEFINNAMANNYSNEKAVAIWNWIEQFAKYGFNKSHAIAYSYIGYWLAWFKAHYPAEFY 709

Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV---------NTPCVDFKVGDNRIYYSL 839
            A +   + N  K  ++ ++ +QF I+++ PSV         +T  +++   +NRIY  L
Sbjct: 710 TALLNGVVGNPSKTSRYIKEVKQFGIEVIKPSVKPAISKKLEDTIKLNYTSSENRIYMPL 769

Query: 840 AAIKGVG---TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             IKG+G     T   + E  ++  FD L +F   + +K LN      L  AG+ DCFGY
Sbjct: 770 TLIKGIGRDFIATLNKVYEEHSN-LFDDLNNFFFYMKNKGLNESNYTLLAKAGSFDCFGY 828

Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
           ++  ++ + D I  ++  +  N     ENI + +K T   KI        N  V    E+
Sbjct: 829 NKSTMVANKDFI--FSAMMAFN-----ENI-SLDKQT---KIENLFEEELNEEVESSYEK 877

Query: 957 RVLGFYFSGHPL 968
            V GFY S +PL
Sbjct: 878 EVFGFYISSNPL 889


>gi|331266518|ref|YP_004326148.1| DNA polymerase III subunit alpha [Streptococcus oralis Uo5]
 gi|326683190|emb|CBZ00808.1| DNA polymerase III subunit alpha [Streptococcus oralis Uo5]
          Length = 1033

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 304/970 (31%), Positives = 481/970 (49%), Gaps = 123/970 (12%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +AI D +NL+ A  F +     GIQP+IG
Sbjct: 4   QLDTKTVYSFMESVVSIEKYVQTAKVYGYSHLAIMDVDNLYGAYHFLEVTRKYGIQPLIG 63

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            ++ + ++D   +            S   L  + +GYQ L++L +   L   G+++    
Sbjct: 64  LEMSL-IKDEKNI------------SFRFLALSTKGYQELMKLST---LKMTGRKNWSDF 107

Query: 133 LSWLQEIGT-----EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            S L+++       +G+  L  G        +F   S    + + T K +          
Sbjct: 108 TSHLEDVAVIVPYFDGIDQLDLGHD------YFIGVSPDTHQEVFT-KPI---------- 150

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-- 245
                                LPL   N+    ++ED +   +L AV  +  + + D   
Sbjct: 151 ---------------------LPLYQVNS---FAKEDLQVLQILSAVKDNVSMREVDLHS 186

Query: 246 ------PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                 P    +   KNR          P+AL N  ++    S+ L      LPRF    
Sbjct: 187 QQGNFLPASDLEARFKNR---------FPQALANLQDLIENVSYQLDPSLK-LPRF---- 232

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             + ++    ELR +A  GL          KG  +  YR+RL+ EL VI  M F  YFL+
Sbjct: 233 --NPERPAVEELRARAEKGLS--------DKGLTSAIYRERLNEELAVIHDMGFDDYFLV 282

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V D +++ +     +G GRGS  GS+ AY+L IT IDP+  +L+FERFLN +R +MPD D
Sbjct: 283 VWDLLRFGRSQGYYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDID 342

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           ID     R E IRYV+++YG + VAQI+T+ +  AK A+RDV +   +P  ++  + K I
Sbjct: 343 IDIPDLYRPEFIRYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKI 402

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                      A   + +FR+   +     +  EI++K+EG  R  S HAAG+V+ D+ L
Sbjct: 403 S---FRDTLTTAYEKNLQFRQVINSKIEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDL 459

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
           +  +P+      D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + LA+  GV + +
Sbjct: 460 TDYIPL--KYGEDMLITQYDAHGVEANGLLKMDFLGLRNLTFVQKMQELLAESEGVHLKI 517

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             I  +D ET  L  +  T GIFQ E  G  + L+ +QP   E+++A  SL RPG  D I
Sbjct: 518 EEIDLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPQVFEEVVATTSLNRPGASDYI 577

Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             +  RK+GKEK+  + P+++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMG
Sbjct: 578 DNFVARKHGKEKVTVLDPVLEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMG 637

Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           KK  +EM   KE FI+GA K G  +  A  +F ++ KFA YGFN+SHA AY+ +++Q A+
Sbjct: 638 KKNAKEMHLMKEDFITGAVKLGHLEEKANQVFAVMEKFAGYGFNRSHAYAYSALAFQLAY 697

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            KTHYP  F    +     +      +  DA Q    + P ++N+     K+   +IY  
Sbjct: 698 FKTHYPAIFFQVMLNYSSSD------YIVDALQMGFDVAPLAINSIPYHDKIAKKKIYLG 751

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
           L AIKG+    +  I+E   ++PF S+EDF +R+        +L  LV  G  D F  +R
Sbjct: 752 LKAIKGMPRDLSYWIIE---NRPFSSIEDFVTRLPKNYKKLSLLTPLVELGLFDEFDKNR 808

Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
            ++L +L N+  + + +          +FA    ++++    + F+    + +F  EQ +
Sbjct: 809 QKILVNLPNLFVFVEEL--------GGLFADTNYSWTEA---DDFT---EAEKFYKEQEL 854

Query: 959 LGFYFSGHPL 968
           +G   S HPL
Sbjct: 855 IGVGISPHPL 864


>gi|54020612|ref|YP_116107.1| DNA polymerase III DnaE [Mycoplasma hyopneumoniae 232]
 gi|53987785|gb|AAV27986.1| DNA polymerase III alpha chain 2 [Mycoplasma hyopneumoniae 232]
          Length = 985

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 245/643 (38%), Positives = 375/643 (58%), Gaps = 29/643 (4%)

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
           ++ RL +E   I ++KF+ YFLI+ DF++WA+KN I +GPGRGS +GS+ AY L IT ++
Sbjct: 258 WKARLQYEYETICKLKFTNYFLIIWDFLKWARKNEILIGPGRGSASGSLVAYLLEITSVN 317

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL++ L+FERFLNP R++MPD DID    RR EVI Y+  KYG +  A IITF +L AK+
Sbjct: 318 PLKYDLIFERFLNPQRITMPDIDIDIQDTRRQEVIDYLFEKYGPDHCATIITFSTLAAKS 377

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD--DSRFR---------EARLAD 505
             RD+ +   +P +Q+++  KLIPN+     +L  + D   S FR         +A    
Sbjct: 378 VFRDISKTFGIPETQINKNAKLIPNN----ANLSQLYDQKSSEFRRLIEKGDNFKAENNS 433

Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
               ++ +IS  LEG+ R +STHAAGIV+   P+++LVP++ + + +L   Q+  ++IE 
Sbjct: 434 EIYKKIYKISAFLEGMPRQSSTHAAGIVLSKIPITKLVPVH-NSKENLNQIQYAAEFIED 492

Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
             L+K D LGLK LT++   L  +   G K+  + +P  ++ T +LL+   T GIFQLES
Sbjct: 493 FSLLKIDLLGLKNLTIVANILAKINSDGHKITFNQLPISENSTNNLLSQGKTSGIFQLES 552

Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY--NNRKNGKEKIVSIHPLIDPMLK 683
            GM  +++ +    I DIIA++SL+RPGPI  I  Y  N  +N  EKI    P  D +++
Sbjct: 553 PGMTASIKKIGVSSINDIIAIISLFRPGPIQQIPTYTKNKERNNWEKIF---PEYDKIVE 609

Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            T GVIIYQEQ+MQI Q+++G++L +AD++R A+ KK + ++DK KE FI   +  G   
Sbjct: 610 STFGVIIYQEQIMQICQVVAGFNLEQADIIRVAISKKDETKLDKIKENFIKNGTNLGYEP 669

Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
            +  +I+ L+ KF+DYGFNK+HA AYA ++Y+ A++K  Y   F    ++ E     KIK
Sbjct: 670 KLVEHIYNLIYKFSDYGFNKAHAVAYATLAYKMAYLKAKYSAYFFVELISNENGAQAKIK 729

Query: 804 KFCQDARQFNIQIMPPSVN--TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADK 860
           K+  +AR F  +I  P++N  T    F  G N I+  L  +KG+GT   + I+ E S + 
Sbjct: 730 KYVGEARDFGFKIHRPNINFSTENAVFDKGKNTIFLPLLMVKGLGTIAVKTIIDERSKNG 789

Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            + +  DF  R+     ++  +E L+FA  L  FG ++  L  + + +  +A +V     
Sbjct: 790 IYKNFLDFIKRMKLVNFSKVAIEKLIFANTLSDFG-NQETLAHNFELLWNHASFV---LN 845

Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
           +K  N+         D   LEK         +ENE + LG  F
Sbjct: 846 DKDGNLVLTTDNFGLDLEFLEKIPYSQEK-NYENEVKYLGMSF 887


>gi|319744957|gb|EFV97287.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
           agalactiae ATCC 13813]
          Length = 1034

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 313/965 (32%), Positives = 487/965 (50%), Gaps = 109/965 (11%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F  L   + YS ++  + L   + K  +     I I D +NL++A  F Q+A  A ++PI
Sbjct: 2   FAQLDTRTVYSFMDSLVDLKTYVSKSKSLGYQTIGILDHSNLYAAYHFIQEAQKANLRPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G   DI +++             ++    + ++T  GY+ L++L +        + S +
Sbjct: 62  VGFSFDIVVENR------------SIEIYCIAINTV-GYKNLLKLST-------AQMSEK 101

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           + L+ L E   EG+ ++      P   A         ++  L F  + G    VNL    
Sbjct: 102 MSLNLLTE-HLEGVQLIL-----PYQDAL--------DQLNLPFDYVIG----VNLTSP- 142

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                      Q+ YT   P++A +   +  + D E   +L A+  + ++  KD    + 
Sbjct: 143 -----------QIPYTK--PIIAIDTVRYFQKNDIETLQMLHAIRDNVLL--KDAQYASK 187

Query: 251 DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQ--VHAPILPRFIEKECDDIQKEE 307
           +  LK   EM   F +  PEAL N   +    ++        PI  R I           
Sbjct: 188 NQELKPCQEMTLAFKERFPEALANLESLVENVTYHFDSDFKLPIFNREIP---------- 237

Query: 308 ENELRNKAVAGLEVR-LAQGAI-AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    AG E+R L Q  + +KG  +  Y++RL+ EL +I +M F  YFLIV D ++
Sbjct: 238 ---------AGEELRTLTQNNLKSKGLWSDAYQERLEKELTIIHKMGFDDYFLIVWDLLR 288

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           + +     +G GRGS AGS+ +YAL IT IDP++ +L+FERFLN +R SMPD DID    
Sbjct: 289 FGRSKGYYMGMGRGSAAGSLVSYALNITGIDPVKHNLIFERFLNEERYSMPDIDIDLPDI 348

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPA 484
            R E +RYV+N+YG    AQI+TF +  AK A+RDV +       ++  + K I   D  
Sbjct: 349 YRGEFLRYVRNRYGSMHSAQIVTFSTFGAKQAIRDVFKRFGASEYELTNITKKIHFRDNL 408

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             V  + +A    FR+   +     +  +I++++EG  R  S HAAG+V+ D  L+  +P
Sbjct: 409 TSVYNRNLA----FRQIIDSKIEYQKAYDIAKRIEGNPRQTSIHAAGVVMSDDLLTDHIP 464

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
           +      D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + + +  G+ + L  I  
Sbjct: 465 LKNG--EDMMITQYDASSVEANGLLKMDFLGLRNLTFVQKMKEKVDKDYGISIQLETIDL 522

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
           +D ET  L     T GIFQ E SG    L  ++P+C ED++A  SL RPG  D    + N
Sbjct: 523 EDKETLKLFAAGQTKGIFQFEQSGAINLLRRIRPECFEDVVATTSLNRPGASDYTENFIN 582

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
           R+ GKEKI  + P+I P+L+ T G+++YQEQVMQIAQ  +G++L ++D+LRRAM KK  +
Sbjct: 583 RRFGKEKIDLVDPVIAPILQPTYGIMLYQEQVMQIAQTYAGFTLGKSDLLRRAMSKKNSK 642

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           EM K  + F+ GA   G  +  A  IFE +AKFA YGFN+SHA AY+ +++Q A+ K HY
Sbjct: 643 EMQKMAQSFLEGAVAKGHRQEDARLIFERMAKFAGYGFNRSHAFAYSALAFQLAYFKAHY 702

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              F    + +   N +    +  DA  F   I  PS+NT     ++   +IY  L  IK
Sbjct: 703 SDVFY--DIMINYSNSD----YLIDAIDFGFVIEKPSINTISYRDRIYKKKIYLGLKNIK 756

Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            V    A  I   S ++PF S+EDF  R+  +      +  L+  GA D F  +R ++  
Sbjct: 757 AVPNDLAYWI---SKNQPFQSIEDFLMRLPQQFQKSGFISPLIAIGAFDEFDNNRRKITS 813

Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
           +LD++  +         N+  ++FA    T    + +E FS   +S ++E EQ +LG   
Sbjct: 814 NLDSLFTFV--------NELGSLFA---DTSYHWLEVEDFS---NSEKYEMEQDILGVGI 859

Query: 964 SGHPL 968
           S HPL
Sbjct: 860 SPHPL 864


>gi|306829373|ref|ZP_07462563.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus mitis
            ATCC 6249]
 gi|304428459|gb|EFM31549.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus mitis
            ATCC 6249]
          Length = 1033

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 310/1034 (29%), Positives = 500/1034 (48%), Gaps = 127/1034 (12%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             L   + YS +E  +S+   +          +AI D +NL+ A  F +     GIQP+IG
Sbjct: 4    QLDTKTVYSFMESVVSIEKYVHTAKDYGYSHLAIMDVDNLYGAYHFLEVTRKYGIQPLIG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             ++ + + +                S   L  + +GYQ L++L +   L   G+++    
Sbjct: 64   LEITLIIDEK-------------AISFRFLALSTKGYQELMKLST---LKMTGRKNWSDF 107

Query: 133  LSWLQEIGT-----EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             S L+++       +G+  L  G        +F   S    + + T K +          
Sbjct: 108  TSHLEDVAVIVPYYDGIDQLDLGHD------YFIGVSPDTHQEVFT-KPI---------- 150

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD--- 244
                                 LPL   N+     +ED +   +L AV  +  + + D   
Sbjct: 151  ---------------------LPLYQVNS---FEKEDIQVLQILSAVKDNVSLREVDVHS 186

Query: 245  -----RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                  P    +   KNR          P++L N  ++    S+ L      LPRF    
Sbjct: 187  QQGIFLPASDLEARFKNR---------FPQSLANLQDLIENVSYQLDPSLK-LPRF---- 232

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              + ++    ELR +A         QG IAK   +  Y++RL+ EL VI  M F  YFL+
Sbjct: 233  --NPERPAVEELRERA--------EQGLIAKELTSVLYQERLNEELAVIHDMGFDDYFLV 282

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++ +     +G GRGS  GS+ AY+L IT IDP+  +L+FERFLN +R +MPD D
Sbjct: 283  VWDLLRFGRSQGYYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDID 342

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID     R E IRYV+++YG + VAQI+T+ +  AK A+RDV +   +P  ++  + K I
Sbjct: 343  IDIPDLYRPEFIRYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKI 402

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                       A   + +FR+   +     +  EI++K+EG  R  S HAAG+V+ D+ L
Sbjct: 403  S---FRDTLTTAYEKNLQFRQVINSKIEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDL 459

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
            +  +P+      D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + LA+  GV + +
Sbjct: 460  TDYIPL--KYGEDMLITQYDAHGVEANGLLKMDFLGLRNLTFVQKMQELLAESEGVHLKI 517

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I  +D ET  L +   T GIFQ E  G  + L+ ++P   E+++A  SL RPG  D I
Sbjct: 518  EEIDLEDSETLALFSAGNTKGIFQFEQPGAIRLLKRVKPQVFEEVVATTSLNRPGASDYI 577

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+GKEK+  + P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMG
Sbjct: 578  DNFVARKHGKEKVTVLDPTLEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMG 637

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  +EM   KE FI+GA K G S+  A  +F ++ KFA YGFN+SHA AY+ +++Q A+
Sbjct: 638  KKNAKEMHLMKEDFIAGAVKLGHSEEKANQVFAVMEKFAGYGFNRSHAYAYSSLAFQLAY 697

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
             KTHYP  F    +     +      +  DA Q    + P ++N+     K+   +IY  
Sbjct: 698  FKTHYPAIFFQVMLNYSSSD------YIVDALQMGFDVAPLAINSIPYHDKIAQKKIYLG 751

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L  IKG+    +  I+E   ++PF S+EDF +R+        +L  LV  G  D F  +R
Sbjct: 752  LKTIKGMPRDFSYWIIE---NRPFSSVEDFVTRLPKNYKKLSLLSPLVELGLFDDFDKNR 808

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             ++L +L N+  + + +          +FA    ++++    + F+    + +F  EQ +
Sbjct: 809  QKILVNLPNLFVFVEEL--------GGLFADASYSWTEA---DDFT---EAEKFYKEQEL 854

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +G   S HPL      L K  +           G+++ L   V   +  +T+KG  + ++
Sbjct: 855  IGVGISAHPLQT----LAKQALYSTTPIATLTEGSHVTLLVEVQKIKVIRTKKGENMAFL 910

Query: 1019 TFSEPAKEYEANFF 1032
               +   + +   F
Sbjct: 911  QVHDSKSKLDVTVF 924


>gi|322374440|ref|ZP_08048954.1| DNA polymerase III, alpha subunit [Streptococcus sp. C300]
 gi|321279940|gb|EFX56979.1| DNA polymerase III, alpha subunit [Streptococcus sp. C300]
          Length = 1033

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 310/1023 (30%), Positives = 507/1023 (49%), Gaps = 105/1023 (10%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             L   + YS +E  +S+   +          +AI D +NL+ A  F +     GI+P+IG
Sbjct: 4    QLDTKTVYSFMESVVSIEKYVQMAKEYGYSHLAIMDVDNLYGAYHFLEATRKHGIRPLIG 63

Query: 73   CQLD-IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
             ++  +  ++N+              S+  L  + +GYQ L++L +   L   G++    
Sbjct: 64   LEMTLVKDEENI--------------SLRFLALSTKGYQELMKLST---LKMTGRKKWSD 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L+++    +    G     +   +F   S    + + T       R  + L +   
Sbjct: 107  FTSHLEDVAIV-VPYFNGVEQLDLGHDYFIGVSPDTPQEVFT-------RPILPLYQVNS 158

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            +++  + QV+Q+       L A  +++ L E D  +   +   A S + +Q         
Sbjct: 159  FEK-EDLQVLQI-------LSAVKDNVSLREVDVHSQQGIFLPA-SDLEAQ--------- 200

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQKEEENE 310
               KNR          P+AL N   +    S+  Q+   + LPRF      + ++    E
Sbjct: 201  --FKNR---------FPQALANLQGLIENVSY--QIDPSLKLPRF------NPERPAVEE 241

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR +A         QG   KG  +  Y +RL+ EL VI  M F  YFL+V D +++ +  
Sbjct: 242  LRERA--------EQGLSDKGLTSAIYHERLNEELAVIHDMGFDDYFLVVWDLLRFGRSQ 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ AY+L IT IDP+  +L+FERFLN +R +MPD DID     R E 
Sbjct: 294  GYYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDLYRPEF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV+++YG + VAQI+T+ +  AK A+RDV +   +P  ++  + K I           
Sbjct: 354  IRYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKIS---FRDTLTT 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI++K+EG  R  S HAAG+V+ D+ L+  +P+     
Sbjct: 411  AYEKNLQFRQVINSKIEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDLTDYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + LA+ G + + +  I  +D ET 
Sbjct: 469  EDMLITQYDAHGVEANGLLKMDFLGLRNLTFVQKMQELLAESGGIHLRIEDIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E  G  + L+ +QP   E+++A  SL RPG  D I  +  RK+GKE
Sbjct: 529  ALFAAGNTKGIFQFEQPGAIRLLKRVQPQVFEEVVATTSLNRPGASDYIDNFVARKHGKE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  + P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK  +EM   K
Sbjct: 589  KVTVLDPALEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAKEMHLMK 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E FI+GA K G ++  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  EDFITGAMKLGHTEEKANQVFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFFQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA Q   ++ P ++N+     K+   +IY  L AIKG+    
Sbjct: 709  VMLNYSSSD------YIVDALQMGFEVAPLAINSIPYHDKISQKKIYLGLKAIKGMPRDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            +  I+E   ++PF S+EDF +R+        +L SLV  G  D F  +R ++L +L N+ 
Sbjct: 763  SYWIIE---NRPFSSIEDFITRLPKNYKKLSLLTSLVELGLFDEFDKNRQKILVNLPNLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             + + +          +FA    ++++    + F+    + +F  EQ ++G   S HPL 
Sbjct: 820  VFVEEL--------GGLFADTNYSWTEA---DDFT---EAEKFYKEQELIGVGISPHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 L K  +    +      G+   L   V   +  +T+KG  + ++   +   + + 
Sbjct: 866  T----LAKQALYPTTQITNLTEGSQTTLLVEVQKIKVIRTKKGESMAFLQVHDSKSKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TVF 924


>gi|322376497|ref|ZP_08050990.1| DNA polymerase III, alpha subunit [Streptococcus sp. M334]
 gi|321282304|gb|EFX59311.1| DNA polymerase III, alpha subunit [Streptococcus sp. M334]
          Length = 1042

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 327/1044 (31%), Positives = 520/1044 (49%), Gaps = 133/1044 (12%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            EK      L   + YS +E  +S++  +          +A+ D +NL+ A +F +     
Sbjct: 6    EKCKLIAQLDTKTVYSFMESVISIDKYVRAAKDYGYTHLAMMDIDNLYGAFDFLEITKKY 65

Query: 66   GIQPIIGCQLD--IDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYL 121
            GI P++G ++   +D Q+ NL+                 L  ++ GYQ+L++L  ++M  
Sbjct: 66   GIHPLLGLEMTLLVDEQEVNLR----------------FLALSSVGYQQLMKLSTAKM-- 107

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
              QG+++  +   +L++I                                      F + 
Sbjct: 108  --QGEKTWSVLSQYLEDIAV--------------------------------IVPYFEEI 133

Query: 182  LYVNLQRHRGYDRY--RESQVVQLAYTHE-LPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
              +NL    GYD Y     + +   + H  LPL   N        D E   VL A+  + 
Sbjct: 134  ESLNL----GYDYYIGVYPETLTSEFHHPILPLYRVNA---FESRDREVLQVLTAIKEN- 185

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIE 297
             +  ++ P  +      + S +  +F +  P+ALEN  ++    S+ L      LPRF  
Sbjct: 186  -LPLREVPLRSRQDVFISASSLEKLFQERFPQALENLEKLISGISYDLDTSLK-LPRF-- 241

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                +  +    ELR +A    E+ LAQ    KG   ++Y+ RLD EL VI  M F  YF
Sbjct: 242  ----NPARPAVEELRERA----ELGLAQ----KGLTGKEYQDRLDQELAVIHDMGFDDYF 289

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+V D +++ + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD
Sbjct: 290  LVVWDLLRFGRSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPD 349

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             DID     R + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K
Sbjct: 350  IDIDIPDIYRPDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITK 409

Query: 478  LIPN----DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
             I        A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+V
Sbjct: 410  KISFRDNLKSAYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVV 462

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
            I D+ L+  +P+      ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  
Sbjct: 463  ISDQDLTNYIPLKHG--DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETE 520

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            GVK+ ++ I  +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RP
Sbjct: 521  GVKIVINEIDLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRP 580

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            G  D I  +  RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+
Sbjct: 581  GASDYINNFVARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADI 640

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK    M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +
Sbjct: 641  LRRAMGKKDASAMHEMRASFIQGSLEAGHTAEKAEKVFDVMEKFAGYGFNRSHAYAYSAL 700

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            ++Q A+ KTHYP  F    + L   N +    +  DA +   ++ P S+NT     K+ +
Sbjct: 701  AFQLAYFKTHYPAIFY--QVMLNSSNSD----YLMDALEAGFEVAPLSINTIPYHDKIAN 754

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              IY  L +IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D
Sbjct: 755  KSIYLGLKSIKGVSKDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFD 811

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSV 950
             F  +R ++  +L N+ +                F  E G+ F D I + ++        
Sbjct: 812  SFEKNRQKVFNNLANLFE----------------FVKELGSLFGDTIYSWQESEDWTGQE 855

Query: 951  RFENEQRVLGFYFSGHPLDVY--KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
            +F  EQ +LG   S HPL     K I     I    E+  +I    I+   ++      +
Sbjct: 856  KFYMEQELLGVGVSKHPLQAIASKAIYPITPIGNLSENSHSIILVEIQKIKII------R 909

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T+KG  + ++   +  K+ +   F
Sbjct: 910  TKKGENMAFLQVDDSKKKLDVTLF 933


>gi|269836260|ref|YP_003318488.1| DNA polymerase III, alpha subunit [Sphaerobacter thermophilus DSM
            20745]
 gi|269785523|gb|ACZ37666.1| DNA polymerase III, alpha subunit [Sphaerobacter thermophilus DSM
            20745]
          Length = 1095

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 329/1039 (31%), Positives = 504/1039 (48%), Gaps = 84/1039 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V L +H++YS L+GA     I+ + +     A+AITD + L  A+EF+Q A AA IQPI
Sbjct: 7    YVELHLHTAYSFLDGASLPEEIIARASELGYRALAITDHDGLHGAMEFAQLARAADIQPI 66

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L   + D   +T              LL  +  GY  L  L++  +    G+  V 
Sbjct: 67   TGAELT--LADGSHLT--------------LLAESVTGYGNLCRLITAAH--HAGEDRVP 108

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L     EGLI+LTG   G + R         AE  L  + + FG + + V LQ++
Sbjct: 109  RLDPDLLPRHAEGLILLTGCRQGALARLVDAGDLAGAEGLLRRYVEWFGAENVVVELQQN 168

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
              Y D  R   +V+LA    L   AT N  +   E +   DVL+A+   T +    R R 
Sbjct: 169  LVYGDTRRVRLLVELAERLGLRYAATGNVHYHRPERHRLQDVLVAIRERTTLDGAHRARR 228

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI-----LQVHAPILPRFIEKECDD 302
               + YL+   E+  +F   P ALE T+EIA RC+       L    P  P    +  DD
Sbjct: 229  ANAEFYLRAAEEVAVLFDRYPAALEATLEIAERCAGFDLTRDLAYRFPDYPTAPGETPDD 288

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGY----HAQDYRQRLDFELNVIARMKFSGYFL 358
                            L  R+ + A+A+ Y           RL  EL +IAR + +G+FL
Sbjct: 289  ----------------LLARICREALAERYPEPERRAAAEARLAEELRLIARHRLAGFFL 332

Query: 359  IVADFIQWAKK--------------NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +  D +  A++               N+P G GRGS   S+  Y + ++ +DPL   L  
Sbjct: 333  LYRDLLLLAQEVAAEVRGTDTPRAGGNLPPGRGRGSSVSSIVCYLIGLSHVDPLAHGLFL 392

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
             RFLN D  S+PD D+DF +D R+ +I  V   YG E  A +  F + + ++A+RD+G+A
Sbjct: 393  GRFLNEDLRSVPDIDLDFPRDIRERLIERVYEVYGPEHAALVCAFSTYKLRSAVRDIGKA 452

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L +P   +D++ KL     A  +  + +A    F  AR   P +  L+E++++L G  RH
Sbjct: 453  LGLPQPDIDKIAKLSEARSAKDLG-EELARIPEF-AARRDAPPLRYLVELAEELAGFPRH 510

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             + H  G+++   PL +LVP+         + Q++    + A  IK DFL L  L+L+++
Sbjct: 511  VTQHVGGMIVSSSPLVELVPIQPAAMPGRYLCQWDKDSCDDARFIKIDFLALGMLSLVEE 570

Query: 585  SLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
             L+ + + G   VDLS I F D   Y ++    T+G+FQ+ES    Q L   QP  +ED+
Sbjct: 571  CLELIVRSGKPPVDLSRIDFADPAVYDMICAGDTIGVFQIESRAQIQMLPRTQPRSLEDL 630

Query: 644  IALVSLYRPGPIDNIVV---YNNR----KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            I  V++ RPGPI    V     NR    +N +  I   HP ++P+L+ET GVI+YQEQV+
Sbjct: 631  IVQVAIVRPGPIVGKAVNPYVQNRQRRMRNPRAPIRYDHPSLEPVLEETLGVILYQEQVL 690

Query: 697  QIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            ++A +L+G++  +A+ LRRAM  K+ +E M     +F  GA   G+   +A  +F  L  
Sbjct: 691  EVAMVLAGFTAGQAEALRRAMSRKRSREAMLHFWRQFRDGALARGVRLEVAKEVFRKLLG 750

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA+YGF KSH+AA+AV++YQ+AW++ +YP EF  A    +            DA++  ++
Sbjct: 751  FAEYGFPKSHSAAFAVLAYQSAWLRCYYPTEFTCALFNNQPMGFYPPHVIVNDAKRHGVR 810

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDS 874
            I+PP VN       V  N +      ++G+G   A  I  E  A+ P+ SL DF  RV  
Sbjct: 811  ILPPDVNQSGARCTVEGNAVRIGFGYVQGIGEDAALLIEREREANGPYRSLADFVRRV-- 868

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
              L R  +E+L+  GA D FG  R + L  L  +   A+   KN     +   A      
Sbjct: 869  -PLAREAVENLIVVGAFDGFGLGRREALWQL-GLFIPARGFGKNGAAGKQLPLALP--VE 924

Query: 935  SDKITLEKFSV-ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
             D + L   S  E  +  ++     LG     HPL + +P L +  I    +      G 
Sbjct: 925  QDMVELRPMSAWEQMAADYDT----LGLSPRYHPLGLLRPHLPE-AIVSTVDLAEIPDGT 979

Query: 994  NIRLAAMVVSKQQKKTRKG 1012
             +R+A +VV +Q+  T KG
Sbjct: 980  EVRVAGLVVCRQRPGTAKG 998


>gi|78044029|ref|YP_359806.1| DNA polymerase III subunit alpha [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996144|gb|ABB15043.1| DNA polymerase III, alpha subunit [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 964

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 291/908 (32%), Positives = 477/908 (52%), Gaps = 87/908 (9%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +V L + + YS LE ++ L+ +++K A     A+ I DTN LF A +    A    ++ +
Sbjct: 4   YVPLNIKTGYSFLESSIKLDGLMEKTARLGLKAVGIADTN-LFGAAKAFFAAKNFNLKLL 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G ++  +                    + L     EGY+ L+   ++ Y    GK+   
Sbjct: 63  LGLEVKSEAG-----------------PLWLYARDNEGYKFLVRAATQKYF---GKE--- 99

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV------ 184
             LS  + +   GLI+L G           F ++ +  K +L FK+ FGD  Y+      
Sbjct: 100 -VLSLAEILEARGLIILGGAE---------FLAAGL--KNVLNFKEAFGDDFYLLAKVDD 147

Query: 185 ---NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
              N +  R         ++ +A  + L +  + N  FL +  Y  + +L A+ ++  + 
Sbjct: 148 LLTNPENIRA--------LLAIAKKYRLKIAGSPNPRFLEKNHYFFYRLLCAMKNNVTLD 199

Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
           Q  + R +P  Y  + +EM  IF+ +  +L+ T+EIA +           LP F    C 
Sbjct: 200 QIKK-RTSPYAYYLSPNEMAKIFAPINHSLKTTLEIAEKVGDFFPGDDLKLPEFT---CP 255

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E++  LR   + G   R        G  +++ ++RL++EL +I R+  +GYFLIV 
Sbjct: 256 G---EKDEYLRKLCLEGAYARY-------GRISREVKERLNYELEIIKRLGLAGYFLIVH 305

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D +++++  ++ +GPGRGS AGS+  Y L +T++DPL+  LLFERFLNP R  +PD D+D
Sbjct: 306 DLVRFSRSQDLALGPGRGSAAGSLVLYLLGVTEVDPLKHGLLFERFLNPGRKVLPDVDLD 365

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           F    R++VIRY+  KYG + VA I T  +  A+ A+R+V +AL  P   ++++  L+P 
Sbjct: 366 FGHLDREKVIRYLFQKYGDDGVAHIGTVITFAARGAVREVAKALGYPEPLLNKITPLLPA 425

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                +  +A+      R+A L DP + +LL +++  EG  RH S HA+G+V+  R   +
Sbjct: 426 FGGSSIE-KAVRALPEVRKA-LEDPVMRKLLTLARFFEGHPRHFSVHASGLVVARREDLE 483

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            +P+    R +  +TQF+   +E+ G +K D LGL+ LT++ +S     +R        I
Sbjct: 484 QIPLASSFRGE-KITQFDKDDVERLGFLKVDLLGLRLLTVVHRS-----RRSAS-----I 532

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
           P +D ET+  +    T+G FQLES GMR  L  + P  IE++  +++L+RPGP+++  V 
Sbjct: 533 PLNDGETWKRIQKAQTIGCFQLESDGMRYYLGKVAPRNIEELAQVLALFRPGPLESGQVD 592

Query: 662 NN--RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
           N    K+ K   V  HP + P+L+E+ G+++YQEQV++IA L++G+ L+++D LRRAM K
Sbjct: 593 NYLLAKHQKAPPVYPHPALKPVLEESHGLVLYQEQVLKIAALVAGFDLAKSDDLRRAMSK 652

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
             ++ M + KE F+ GA KNG S   A  IF LL  FA YGFNK+H  +YA ++Y + ++
Sbjct: 653 HDRKIMAELKEEFMMGAVKNGYSAADAEKIFSLLQNFAGYGFNKAHGVSYAYLAYYSTFL 712

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKF-CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            TH+P  +   ++ L  D       F  ++A +  I+I+ P +N     F    + I   
Sbjct: 713 ITHWPKTYF--TLLLNSDGGFYPPSFYLREAGRRGIKILLPDINESQYGFTEVKDGIRIG 770

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
              I+GVG   A  I+E    +P+ S  DF  R    KL+   + +L+ AGA D FG SR
Sbjct: 771 FKDIEGVGPKAASIILEGRT-RPYTSFWDFWQRA-GHKLSVETIRNLILAGAFDGFGVSR 828

Query: 899 MQLLQSLD 906
             LL  L+
Sbjct: 829 ESLLYCLE 836


>gi|313890133|ref|ZP_07823768.1| DNA polymerase III, alpha subunit [Streptococcus pseudoporcinus SPIN
            20026]
 gi|313121494|gb|EFR44598.1| DNA polymerase III, alpha subunit [Streptococcus pseudoporcinus SPIN
            20026]
          Length = 1036

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 317/1034 (30%), Positives = 517/1034 (50%), Gaps = 118/1034 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L   + YS ++  + L++ + +       +I I D + L++A  F  KA  AG+QPI
Sbjct: 2    FVQLDTKTVYSFMDSLIDLDHYISEAKRIGYQSIGIMDKDCLYAAYHFILKAQKAGLQPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  ++  +        QGK       S+ LL     GYQ L++L +     +   + ++
Sbjct: 62   LGLAIEYPI--------QGKE-----ESLYLLAKNNLGYQNLLKLSTLRMSAEFTPEHIK 108

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              L  L       +I+        I+  F + +    E +L                   
Sbjct: 109  DFLDGLM------VILPYQPHLHGIELGFPYFTGVFEETKL------------------- 143

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                     V  L   + +PL       + S+ + E   VL A+  +  +S+     V  
Sbjct: 144  ---------VQPLPLQNLIPLRTVR---YFSDSERETLQVLHAIRDNVTLSET--KVVEA 189

Query: 251  DHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              YLK+  E+   F +L P   ++  ++ +   +    H   LPRF      + Q+  + 
Sbjct: 190  GQYLKDPKEIAQKFEELYPGINDHLADLLKDIRYEFD-HEFKLPRF------NRQRAAKE 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL+     GL+         KG     Y++RL+ EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELKELTEDGLK--------KKGLWQDIYQERLEKELQIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++ +LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVKHNLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             + YV+N+YG +  AQI+TF +  AK A+RDV +   +P  ++  L K I    A   +L
Sbjct: 355  FLHYVRNRYGSDHSAQIVTFSTFGAKQAIRDVFKRFGVPEYEISNLSKKI----AFKDTL 410

Query: 490  QAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +I + +  FR+   +   + +  EI++++EG  R  S HAAGIV+ D  L+  +P+   
Sbjct: 411  TSIYEKNISFRQTINSRLELQKAFEIAKRIEGNPRQTSIHAAGIVMSDDLLTDHIPLKEG 470

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHE 607
            +  ++ VTQ++   +E  GL+K DFLGL+ LT +QK  + +A+  G  + +  I  +D +
Sbjct: 471  I--EMMVTQYDAPAVEANGLLKMDFLGLRNLTFVQKMKEKVAKDFGKDIIIEEIDLEDPK 528

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T GIFQ E SG    L+ ++P   E+I+A  SL RPG  D    +  R+ G
Sbjct: 529  TLELFAKGDTKGIFQFEQSGAISLLKRIKPKRFEEIVATTSLNRPGASDYTNNFIKRRRG 588

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM K
Sbjct: 589  QEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVFAGFTLGKADLLRRAMSKKNLAEMKK 648

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +  F+ GA++ G S+  A  +F  + KFA YGFN+SHA AY+ +++Q A+ K HYP  F
Sbjct: 649  MENDFLEGAARLGRSEETARLLFNRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVF 708

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
                M     +      +  DA + + +++P ++N    + K+  N+IY  L  IKG+  
Sbjct: 709  FDVIMNYSNSD------YISDALESDFKVVPLTINNIPYNDKIDSNKIYMGLKNIKGLPR 762

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A  I+E    +PF S+E F S + +K   + +LE L   G  D F  +R ++L +LD 
Sbjct: 763  DLAYWIIEK---RPFSSIESFLSALPTKYQKKDLLEPLFAVGLFDLFESNRRKVLNNLDG 819

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  +         ++  ++FA    ++SD    + FS   +  +++ E+  +G   S HP
Sbjct: 820  LLIF--------VSELGSLFADSSFSWSD---CDDFS---NREKYQLEENYIGIGLSPHP 865

Query: 968  L--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            L          + PI + +  K  E ++  ++   +R+     S QQ        + ++T
Sbjct: 866  LLEIAEKTDQAFTPITKLL--KDSEHTI-LVQIEKVRIIRTKSSGQQ--------MAFLT 914

Query: 1020 FSEPAKEYEANFFP 1033
             ++  K+ +   FP
Sbjct: 915  VTDTKKKIDVTVFP 928


>gi|77408937|ref|ZP_00785660.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae COH1]
 gi|77172437|gb|EAO75583.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae COH1]
          Length = 1034

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 314/965 (32%), Positives = 485/965 (50%), Gaps = 109/965 (11%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F  L   + YS ++  + L   + K  +     I I D +NL++A  F Q+A  A ++PI
Sbjct: 2   FAQLDTRTVYSFMDSLVDLKTYVSKSKSLGYQTIGILDHSNLYAAYHFIQEAQKANLRPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G   DI +++             ++    + ++T  GY+ L++L +        + S +
Sbjct: 62  VGFSFDIVVENR------------SIEVYCIAINTV-GYKNLLKLST-------AQMSEK 101

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           + L+ L E   EG+ ++      P   A         ++  L F  + G    VNL    
Sbjct: 102 MSLNLLTE-HLEGVQLIL-----PYQDAL--------DQLNLPFDYVIG----VNLTSP- 142

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                      Q+ YT   P++A +   +  + D E   +L A+  + ++  KD    + 
Sbjct: 143 -----------QIPYTK--PIIAIDTVRYFQKNDIETLQMLHAIRDNVLL--KDAQYASK 187

Query: 251 DHYLKNRSEMVSIFSD-LPEALENTVEIARRC--SFILQVHAPILPRFIEKECDDIQKEE 307
           +  LK   EM   F    PEAL N   +       F      PI  R I           
Sbjct: 188 NQELKPCQEMTLAFKKRFPEALANLESLVENVVYHFDSDFKLPIFNREIP---------- 237

Query: 308 ENELRNKAVAGLEVR-LAQGAI-AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    AG E+R L Q  + +KG  +  Y++RL+ EL +I +M F  YFLIV D ++
Sbjct: 238 ---------AGEELRTLTQNNLKSKGLWSDAYQERLEKELTIIHKMGFDDYFLIVWDLLR 288

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           + +     +G GRGS AGS+ +YAL IT IDP++ +L+FERFLN +R SMPD DID    
Sbjct: 289 FGRSKGYYMGMGRGSAAGSLVSYALNITGIDPVKHNLIFERFLNEERYSMPDIDIDLPDI 348

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPA 484
            R E +RYV+N+YG    AQI+TF +  AK A+RDV +       ++  + K I   D  
Sbjct: 349 YRGEFLRYVRNRYGSMHSAQIVTFSTFGAKQAIRDVFKRFGASEYELTNITKKIHFRDNL 408

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             V  + +A    FR+   +     +  +I++++EG  R  S HAAG+V+ D  L+  +P
Sbjct: 409 TSVYNRNLA----FRQIIDSKIEYQKAYDIAKRIEGNPRQTSIHAAGVVMSDDLLTDHIP 464

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
           +      D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + + +  G+ + L  I  
Sbjct: 465 LKNG--EDMMITQYDASSVEANGLLKMDFLGLRNLTFVQKMKEKVDKDYGISIQLEAIDL 522

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
           +D ET  L     T GIFQ E SG    L  ++P+C ED++A  SL RPG  D    + N
Sbjct: 523 EDKETLKLFAAGQTKGIFQFEQSGAINLLRRIRPECFEDVVATTSLNRPGASDYTENFIN 582

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
           R+ GKEKI  + P+I P+L+ T G+++YQEQVMQIAQ  +G++L ++D+LRRAM KK  +
Sbjct: 583 RRFGKEKIDLVDPVIAPILQPTYGIMLYQEQVMQIAQTYAGFTLGKSDLLRRAMSKKNSK 642

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           EM K  + F+ GA   G  +  A  IFE +AKFA YGFN+SHA AY+ +++Q A+ K HY
Sbjct: 643 EMQKMSQSFLEGAVSKGHRQEDARLIFERMAKFAGYGFNRSHAFAYSALAFQLAYFKAHY 702

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              F    + +   N +    +  DA  F   I  PS+NT     ++   +IY  L  IK
Sbjct: 703 SDVFY--DIMINYSNSD----YLIDAIDFGFVIEKPSINTISYRDRIYKKKIYLGLKNIK 756

Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            V    A  I   S ++PF S+EDF  R+  +      +  L+  GA D F  +R ++  
Sbjct: 757 AVPNDLAYWI---SKNQPFQSIEDFLMRLPQQFQKSGFISPLIAIGAFDEFDNNRRKITS 813

Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
           +LD++  +         N+  ++FA    T    + +E FS   +S ++E EQ +LG   
Sbjct: 814 NLDSLFTFV--------NELGSLFA---DTSYHWLEVEDFS---NSEKYEMEQDILGVGI 859

Query: 964 SGHPL 968
           S HPL
Sbjct: 860 SPHPL 864


>gi|322385804|ref|ZP_08059448.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            cristatus ATCC 51100]
 gi|321270542|gb|EFX53458.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            cristatus ATCC 51100]
          Length = 1036

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 309/1026 (30%), Positives = 507/1026 (49%), Gaps = 104/1026 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS ++  +S+   + +       ++ + D +NL+ A  F ++A AAG+QP++
Sbjct: 3    TQLDTKTVYSFMDSLVSIKKYVQRAKGLGYKSLGMMDVDNLYGAYHFLEEAKAAGLQPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++++    N         P     ++ LL   ++GY+ L+++ +   +  Q  +  + 
Sbjct: 63   GLEMEVFKDGN---------PL----NLRLLALDSQGYRNLMKISTLKMMNRQNWEDFQH 109

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                      +GL ++      PI     F      +  L  +  +F D     L R   
Sbjct: 110  LF--------KGLALIV-----PI-----FEGVDQLDLGLDFYVGVFPDTPRQELTR--- 148

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P++  +   +  + D E   +L A+  +  +S ++   ++  
Sbjct: 149  ------------------PVLPLHTVRYFEQGDLETLQMLRAIRDN--ISLREVGHLSSH 188

Query: 252  HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +L     +   F++  PE+L N  ++     + +      LPRF      + ++    E
Sbjct: 189  EFLLAPESLEETFAENFPESLTNLEKLVAGVHYEINTELK-LPRF------NPERPAVEE 241

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A  GL  R   G +        Y+ RLD EL+VI +M F  YFLIV D +++ +  
Sbjct: 242  LRELAETGLAKRGLAGEV--------YQARLDQELDVIHQMGFDDYFLIVWDLLRFGRSQ 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ AYAL IT IDP+  +LLFERFLN +R +MPD DID     R E 
Sbjct: 294  GYYMGMGRGSAVGSLVAYALEITGIDPVEKNLLFERFLNLERYTMPDIDIDIPDVYRPEF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAHPVSL 489
            IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I   D       
Sbjct: 354  IRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNMTKKIGFRDNLTTAYE 413

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            + IA    FR+   +     +  EI++K+EG  R  S HAAG+V+ D  L+  +P+    
Sbjct: 414  RNIA----FRQIINSKLEYQKAFEIAKKIEGNPRQTSIHAAGVVMSDDDLTNQIPL--KY 467

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L + GV +D++ I  +D ET
Sbjct: 468  GEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQQMKEAALDKYGVDIDIARIDLEDEET 527

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ +QP   E+++A  SL RPG  D I  +  RK+G+
Sbjct: 528  LRLFAAGNTKGIFQFEQAGAISLLKRVQPVKFEEVVATTSLNRPGASDYIDNFVKRKHGR 587

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++  I P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + 
Sbjct: 588  ERVEMIDPSLEDILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAAEMHQM 647

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F+ GA K G S+T A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 648  EEEFVKGAVKLGHSETKAKEVFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDIFF 707

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGT 847
               +     +      +  DA  F  ++ P ++ N P  D K  + +IY  L  IKG+  
Sbjct: 708  DVMLNYSSSD------YITDALGFGFELAPLTIHNIPYKD-KFQERKIYLGLKNIKGLPR 760

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A  I+E     PF S+EDF  R+        +L  LV  G  D F  +R ++L +L N
Sbjct: 761  DFAFWIIEERQKNPFSSVEDFILRLPQSYHKLPLLSPLVQLGLFDVFEPNRQKILHNLPN 820

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  +A        ++  ++FA    +++D    E F+   ++ +FE EQ ++G   S HP
Sbjct: 821  LFVFA--------DELGSLFADTSYSWTDS---EDFT---AAEKFEQEQALIGIGLSDHP 866

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L      L K   + +         +   +   V S +  +T+ G  + ++  ++  K+ 
Sbjct: 867  LIS----LAKKANRSFVWIEELADNSKATILVEVQSIKVIRTKNGENMAFMQVTDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|325684283|gb|EGD26456.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            delbrueckii subsp. lactis DSM 20072]
          Length = 1164

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 310/1021 (30%), Positives = 495/1021 (48%), Gaps = 68/1021 (6%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  S+ ++L   +   +++         A+A+TD N  F   +F Q+A  AGI+P++G 
Sbjct: 6    LQTISANTILASPMKTADLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLG- 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                 +Q   K     +  +     +V L  + +GYQ L+ L S + +           L
Sbjct: 65   -----LQGRFKGIELEEAEY----DLVFLAQSQKGYQSLMRLSSFLNIASGDLAGPAPSL 115

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL---QRHR 190
            + L E+    +I+  G +S         NS +   K+L  F    G  LY+ +   +   
Sbjct: 116  ADLPELSDLTVIVPAGLTSELRQLNKLRNSGEEYVKKLQAFLPK-GLPLYLGVYPAESAA 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             YD Y    V +LA    LP+    +  +L   D     VL A+    V+ + +   +  
Sbjct: 175  AYDAY----VKKLAEISALPITVVEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAE 230

Query: 251  ---DHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                H+L+    +     +  L EAL N+ EIA  C   +    P LP F +        
Sbjct: 231  GQGSHWLRPAPVLEDACREMGLEEALANSGEIAASCHAKIPFKEPQLPVFPQATG----L 286

Query: 306  EEENELRNKAVAGLE-VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              +  L   A AGLE + L QG     YHA     RL  EL VI +M F+ YFLIV D +
Sbjct: 287  SSDQYLEKLAFAGLEKLGLKQGI----YHA-----RLQKELAVIQQMGFADYFLIVGDIV 337

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             + ++    VGPGRGS AGS+ AYAL IT IDPL++ LLFERFLNP R  MPD D+DF  
Sbjct: 338  NYCRQRGALVGPGRGSAAGSLVAYALGITQIDPLKYDLLFERFLNPARADMPDIDLDFTT 397

Query: 425  DRRDEVIRYVQNKYG--------HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
              R     YVQ KYG         + VA+I+   +++AK+ L   G+   +    + RL 
Sbjct: 398  SGRKLAFAYVQEKYGAKARFGEGSDLVARILALTTMKAKSVLERTGQVFGLTLPAIARLK 457

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            + +        +L      + F+    A P    L + + +LEGL     THA G+VI +
Sbjct: 458  QAM----GAAKTLAEAGQQAEFKALVAASPLTRLLYQTAARLEGLPEDTGTHAPGLVISE 513

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
             PLS+ + +     + L   +   K++EK GL+K DFL L  L LL+  L  + +    +
Sbjct: 514  EPLSRQIGLMTGKEAPLWTVEQTKKYVEKYGLLKIDFLTLDNLELLEGVLAEIQKSSGPL 573

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL+ +P DD +T  L     T  IFQ  SSGM++ L  +QP   +D+   V+LYRPGPI 
Sbjct: 574  DLTRLPLDDPDTLRLFARGETQQIFQFNSSGMQEVLRKIQPRTFDDLSVAVALYRPGPIA 633

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +I +Y  RKNG   +    P +  +L  T G+ +YQEQVMQ A++ +G+SL+EADV R A
Sbjct: 634  SIPLYVARKNGTSPVQYPDPSLKEVLGPTYGIFVYQEQVMQTARIFAGFSLAEADVFRNA 693

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + KK    + ++K +F++GA + G S+  A  ++ L+  FA+YGFN SHA AYA+++Y  
Sbjct: 694  ISKKQAGLLAEEKGKFVAGAVRKGHSRQAAEAVYALIEPFANYGFNHSHAVAYALLAYWQ 753

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++  H+P EF      L     ++     + AR+  ++I+ P +N    + ++ + RIY
Sbjct: 754  AFLSVHFPREFYLEK--LRASRGKEKGAIIRQARKAGVEILGPEINLSQAEARLFEGRIY 811

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  I G+       ++  +  +P  S   F  ++D+K+L  + L  L+ AG  D    
Sbjct: 812  LGLKDIMGITPAFLDQLL--ALKRPVTSFPAFLRQLDTKELKEKQLVPLIEAGLFDQVSP 869

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LL +  N+   A+  +K+     ++  A ++         E   +  ++ +   E+
Sbjct: 870  NRASLLVNCGNMLNTARLSQKSLV--LQDFLAAKE---------ENVPMPTAAEKVAMEE 918

Query: 957  RVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            R +GF  +  PL++  K + ++ G K +        G  +   A  + K   + ++G+R 
Sbjct: 919  RAMGFAVTASPLEIAGKALAKRYGAKPFAGLALNETGQVL---AQFIKKNNWRVKRGARA 975

Query: 1016 G 1016
            G
Sbjct: 976  G 976


>gi|320546638|ref|ZP_08040950.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus equinus
            ATCC 9812]
 gi|320448693|gb|EFW89424.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus equinus
            ATCC 9812]
          Length = 1035

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 309/1041 (29%), Positives = 509/1041 (48%), Gaps = 133/1041 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   + +        I I D +NL++A  F + A   GI+P+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLEGYVKEAKVLGYQTIGIMDKDNLYAAFHFIEIAKKQGIRPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-------LD 123
            +G +L +D+Q+NL +T              L+    +GY+ L+++ SR          L+
Sbjct: 62   LGLELTLDIQENLSVT------------FYLIARDTQGYKNLMKVSSRQMTNGIQLEDLN 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
               Q + + + + +++ +          S P D                          Y
Sbjct: 110  DYLQGIAVIIPYFEDLES---------ISVPFD-------------------------YY 135

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            + +  H     Y +            P++  +   + +  + E   +L A+  +  VS K
Sbjct: 136  IGVDIHSEEREYNK------------PILPLHTVRYFNTNEVETLHMLHAIRDN--VSLK 181

Query: 244  DRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            D P V  + +L     +   F    P+ALEN  ++     +        LPRF      +
Sbjct: 182  DAPLVPQNQHLVACDILTQAFEQKFPKALENLEQLVSTIQYDFNSELK-LPRF------N 234

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             QK  + EL     +GL+         KG    +Y++RL  EL+VI +M F  YFLIV D
Sbjct: 235  RQKPAQEELVELTQSGLK--------EKGLWLLEYQERLSKELSVIHKMGFDDYFLIVWD 286

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++ +     +G GRGS AGS+ +YAL IT IDP++ +LLFERFLN +R SMPD DID 
Sbjct: 287  LLRFGRSRGYYMGMGRGSAAGSLVSYALDITGIDPVKNNLLFERFLNEERYSMPDIDIDL 346

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-N 481
                R E + YV+N+YG    AQI+TF +  AK A+RDV +    P  ++  + K I   
Sbjct: 347  PDVYRSEFLHYVRNRYGSLHSAQIVTFSTFGAKQAIRDVFKRFGAPEHELTNITKKISFR 406

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            D    V  + ++    FR+   +     +   I++++EG  R  S HAAG+V+ D  L++
Sbjct: 407  DNLTTVYEKNLS----FRQIINSKIEYQKAFAIAKRIEGNPRQTSIHAAGVVMSDDNLTE 462

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
             +P+      D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  + +A+   V +D+  
Sbjct: 463  HIPL--KAGEDMMITQYDASAVEANGLLKMDFLGLRNLTFVQRMQEKVAKDYDVNIDIKS 520

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            I  +D +T  L     T GIFQ E +G    L+ ++P   EDI+A  SL RPG  D    
Sbjct: 521  INLEDKKTLALFAAGRTKGIFQFEQAGAINLLKRIKPRKFEDIVATTSLNRPGASDYTEN 580

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  R+  KE +  I PL+  +L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK
Sbjct: 581  FIKRRFRKETVDLIDPLVAHILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKK 640

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              E+M K +  F+ GA   G    +A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K
Sbjct: 641  KVEDMQKMESEFLKGAQSLGRPLDVAKDLFSRMAKFAGYGFNRSHAFAYSALAFQLAYFK 700

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYP  F    +     +      +  DA +    +    +NT   + K+ D RIY  L 
Sbjct: 701  AHYPAVFYDVMLNYSSAD------YITDALESEFSVNKIDINTVPYNDKISDGRIYLGLK 754

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             +KGV       I+E   ++PF S+EDF +++      +  +  L+  GA D F  +R +
Sbjct: 755  NLKGVPRDMCYWIIE---NRPFSSIEDFLTKLPENYQKKEFVTPLIEIGAFDKFEKNRRK 811

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            ++++L+ +  +         N+  ++FA    ++   I +E FS   S+ ++  EQ +LG
Sbjct: 812  IIENLEPLFMF--------VNELGSLFAETSYSW---IEVEDFS---SAEKYRQEQGLLG 857

Query: 961  FYFSGHPLDVYKPILRKMGIKG------YEESVATI--RGNNIRLAAMVVSKQQKKTRKG 1012
               S HPL     I +K  +        +E + ATI    N IR+         +   KG
Sbjct: 858  VGISPHPL---LEIAKKSSVSFTALADLHENTEATILVELNQIRVI--------RTKTKG 906

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
             ++ ++  ++  K+++   FP
Sbjct: 907  EQMAFLNVTDMKKKFDVTLFP 927


>gi|51893023|ref|YP_075714.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
            14863]
 gi|71151840|sp|Q67N73|DNAE2_SYMTH RecName: Full=Error-prone DNA polymerase
 gi|51856712|dbj|BAD40870.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
            14863]
          Length = 1085

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 317/1054 (30%), Positives = 515/1054 (48%), Gaps = 65/1054 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS +S L+GA  L++++ + A    PA+A+TD NN+  A+ F +KA  AGIQP
Sbjct: 2    SFVHLHVHSPFSFLDGASRLDDLIAEAALHGMPALALTDHNNVSGAVRFQRKAQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G +L ++   +L +   G   +    ++  L++ A   Q        M+ L  G   +
Sbjct: 62   IQGAELTLEGGYHLTLLATGPKGYA---NLNRLITAAHLGQEPRATPGAMFALAPGHDRL 118

Query: 130  R-IC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            +  C LS L    T+GLI L+G   G I           AE     +   F  R Y+ L 
Sbjct: 119  QPACPLSALSH-DTDGLIALSGCRRGEIPSLILRGRLAEAEAAARRYAAWFPGRFYLELH 177

Query: 188  RHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
              R       ++ ++ L     LPLV T+N    + E++  HD+L  V   T + Q    
Sbjct: 178  DERLPGEQALNRALRDLGEALGLPLVVTSNVHHRTREEFFVHDLLTCVRTLTRIDQPHPE 237

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R   D  YLK    M+  F + PEA++NT+ IA RC  +L + A + P F   +      
Sbjct: 238  RPLNDQRYLKPPEVMIERFREFPEAVKNTLAIAERCRPVLDLDARLHPEFQTPDG----- 292

Query: 306  EEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                   +   A L   +  GA  + G   +  R+RL+ EL +I R+ +  YFL+V D +
Sbjct: 293  -------SHPAAYLTHLVYDGAARRYGRITERIRRRLEHELTIITRLGYEDYFLLVWDVV 345

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A++  I    GRGS A S  AY L ITD+D +   LLFERF++ +R   PD DIDF  
Sbjct: 346  RFARERGIRCA-GRGSAADSAVAYCLFITDVDAIERGLLFERFMSLERAQKPDIDIDFDA 404

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RRDEV  YV  KYG + VA + T+ + QA++A+RD+G+A+    + +D L K IP    
Sbjct: 405  RRRDEVAAYVYRKYGADHVASVCTYNTFQARSAVRDLGKAMGFQEADLDYLAKRIPWHAG 464

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                L  +A     R++ +     ++L++ ++++    R   TH  G+VI  RPL ++ P
Sbjct: 465  ADEILTVMARYPELRQSGIPWHKFEQLVQAAERVARFPRFIGTHLGGLVISRRPLLEVTP 524

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +    +  + V QF+ +++E  GL+K D L L+T T +  ++  +      +D   IP  
Sbjct: 525  LQMAAKGQV-VCQFDKEYVEDLGLVKLDLLSLRTFTAVDDAVRAIGD----IDYEQIPHG 579

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
            D  TY +L    ++G+FQLES   R     ++PD  EDI+A V++ RPGPI   +V  + 
Sbjct: 580  DAATYEMLGVGESIGVFQLESPAQRALQARLKPDRFEDIVASVAIIRPGPIKGNMVEPFL 639

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R++GKE++  +HP + P+L++T GV+++QEQV++IA  ++G++  EAD LRR M   + 
Sbjct: 640  ARRHGKEEVTYLHPKLKPILEKTYGVVLFQEQVIEIATAVAGFTPGEADQLRRVMTHARN 699

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +E+M+     F   A+  G+   +A  IF  +  +A YGF ++HAAA+A  +Y+TA++  
Sbjct: 700  REDMEAIGRLFRQKAAAAGVDPAVADTIFSYIQGYASYGFCEAHAAAFANTAYKTAYLVR 759

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD--------- 832
            HYP E+ AA M+ +      I     +AR+  + ++P  +N     F V +         
Sbjct: 760  HYPAEYFAALMSAQPMGYYPINTLAVEARRRGVGLLPVDINRSEEAFTVEEWSREAWEAF 819

Query: 833  --------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                            I   L A+KGVG   A  I+ A     F SL D   R     + 
Sbjct: 820  WGMEPFAPEYPATGKAIRIGLRAVKGVGEPAAAAILAARDGGEFRSLADLVRRTGG-AVP 878

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            R  LE+LV AGA D    +R   L  + ++ + A+ + + R      +   +      + 
Sbjct: 879  RGPLEALVLAGAFDRLHSNRRAALWQVAHLLE-AERIRQERGAGQAGLLDGDAPGLGAQA 937

Query: 939  TLEKFSVE----------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
                 +             ++ R+  E  + G     H +   +  L + G    +E   
Sbjct: 938  AEALEAASPQGTPAIADFGAAERYLKEYELTGLMVRTHFMRFVRERLAREGYLTAQEVRQ 997

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
               G  +++A + V   +  TR G  + +++  +
Sbjct: 998  RRAGELVKVAGLPVCPHRPPTRSGKIVVFLSLED 1031


>gi|322389221|ref|ZP_08062782.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            parasanguinis ATCC 903]
 gi|321144126|gb|EFX39543.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            parasanguinis ATCC 903]
          Length = 1033

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 311/1028 (30%), Positives = 529/1028 (51%), Gaps = 113/1028 (10%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             L   S Y+ +E  +++ + +    +    A+ I D +NL+ A EF +   A  + P++G
Sbjct: 4    QLDTKSVYTFMESLVTIKDYVQVAKSMGYGALGIMDIDNLYGAYEFIEACQAQKLNPLVG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             ++ +++ +             T+P  ++ +ST +GYQ L+++ +   +     + V+  
Sbjct: 64   LEIGLEVDNE------------TIPLRMMALST-KGYQNLMKMSTVKMMGKSNWEDVKHL 110

Query: 133  LSWLQEIGTEGLIMLTGG--SSG--PIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                    TEG+ ++     +SG  P+   +F                +F D        
Sbjct: 111  --------TEGVAVIVPAPFASGDLPLGLDYFIG--------------VFAD-------- 140

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                        VQ  ++H  P++  +   F   ED EA  +L A+  +  +++     +
Sbjct: 141  ----------TPVQ-EFSH--PVLPLHTVRFFEAEDVEAMQMLAAIKDNQSLTETGP--I 185

Query: 249  TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             P   LK   ++ + F++  P+A+ N  ++ +   + +      LPRF      + QK  
Sbjct: 186  DPTTVLKTPQDLKNDFAERFPQAITNLEKLVQGIQYDIDTQLK-LPRF------NPQKPA 238

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              ELR  A AGL        + K   +  Y++RL++EL++I +M F  YFLIV D +++ 
Sbjct: 239  VEELRELAQAGL--------LRKNLTSPVYQERLEYELDIIHQMGFDDYFLIVWDLLRFG 290

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     +G GRGS  GS+ AYAL IT IDP+  +LLFERFLN +R +MPD DID     R
Sbjct: 291  RSQGYYMGMGRGSAVGSLVAYALGITGIDPVEKNLLFERFLNVERYTMPDIDIDIPDIYR 350

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAHP 486
             E IRYV+++YG    AQI+TF +  AK A+RDV +   +P  ++  + K I   D    
Sbjct: 351  PEFIRYVRDRYGSYHAAQIVTFSTFGAKQAIRDVFKRFGVPEYELTSITKRIGFRDTLTT 410

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               Q +A    FR+   +    +R  EI++++EG  R  S HAAG+V+ D+ L+  +P+ 
Sbjct: 411  AYEQNLA----FRQVIHSRAEFERGFEIAKRIEGQPRQTSIHAAGVVMSDQDLTDHIPL- 465

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
                 D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + + ++   ++ +  I  +D
Sbjct: 466  -KYGEDMFVTQYDAHAVEANGLLKMDFLGLRNLTFVQKMKEAVYEKYQEEIVIEAIDLED 524

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             ET  L T   T GIFQ E +G  + L  ++P+  E+++A  SL RPG  D I  +  RK
Sbjct: 525  PETLALFTAGDTKGIFQFEQAGAIRLLRRVRPNHFEEVVATTSLNRPGASDYIDNFVKRK 584

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+EK+  + P I+ +L+ T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK   EM
Sbjct: 585  HGQEKVEILDPAIEAILRPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKNVAEM 644

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             K ++ F++GA K G ++  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP 
Sbjct: 645  HKMEDDFVAGALKLGHTEEKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQMAYFKVHYPD 704

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F    +     +      +  DA QF+ ++ P S+NT     K  D +IY  +  IKG+
Sbjct: 705  VFFDVMLNYSSSD------YLTDALQFDFKVAPLSINTIPYRDKFQDRKIYLGMKNIKGL 758

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                A  I++   ++PF+S+EDF  R+ ++     +L  LV  G  D F  +R ++L +L
Sbjct: 759  PRDLAYWIID---NRPFESVEDFILRLPNQYHKLPLLTPLVELGLFDIFEKNRRKVLHNL 815

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             N+  +A        ++  ++FA    ++++    E FS    + ++E E+ ++G   S 
Sbjct: 816  PNLFVFA--------DELGSLFADSNYSWTEA---EDFS---QAEKYEKEEAIIGVGLST 861

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HPL      + +      +     I+G   R+   V + +  +T+ G  + ++  S+  K
Sbjct: 862  HPLIA----IGQTSPYEIQPISQLIQGEQARILIEVQAIRTIRTKSGDLMAFLQVSDTKK 917

Query: 1026 EYEANFFP 1033
            + +   FP
Sbjct: 918  KLDVTLFP 925


>gi|262282918|ref|ZP_06060685.1| DNA-directed DNA polymerase subunit III alpha [Streptococcus sp.
            2_1_36FAA]
 gi|262261170|gb|EEY79869.1| DNA-directed DNA polymerase subunit III alpha [Streptococcus sp.
            2_1_36FAA]
          Length = 1033

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 318/1032 (30%), Positives = 507/1032 (49%), Gaps = 121/1032 (11%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             L   + YS ++  +S+   ++K        + I D +NL+ A  F ++   AGIQ ++G
Sbjct: 4    QLDTKTVYSFMDSLVSIKKYVEKAKEFGYSHLGIMDMDNLYGAYHFLEETKVAGIQGLLG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              L++ ++D   +            S+ LL   ++GY+ L++ VS + +LD+ + S    
Sbjct: 64   LDLNL-VKDGQPL------------SLRLLAINSQGYRNLMK-VSTLIMLDKKEWSD--- 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
               +Q +  +GL ++     G  D                      G   Y+ +      
Sbjct: 107  ---IQHL-MQGLALIVPAYPGIDDLDL-------------------GKDYYIGVS----- 138

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPD 251
                 +  +Q      LPL       +    D E   +L A+  +  + +  D P  +  
Sbjct: 139  ----PTTPLQDFSRPTLPLYTVR---YFDTGDLETLQMLRAIRENVSLREVGDLP--SGQ 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            H+L+      +     PE+LEN   + +   + +      LPRF      + ++    EL
Sbjct: 190  HFLRPEQLRDAFEKTFPESLENLERLVQDVHYDIDTELK-LPRF------NPERPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R ++ AGL+ R        G  +  Y++RL+ EL VI +M F  YFLIV D +++ +   
Sbjct: 243  RERSEAGLKKR--------GLTSSLYQERLNQELAVIHQMGFDDYFLIVWDLLRFGRSQG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E I
Sbjct: 295  YYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPEFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAHPVSLQ 490
            RYV+++YG    AQI+T+ +  AK A+RDV +   +   ++  + K I   D       +
Sbjct: 355  RYVRDRYGTLHAAQIVTYSTFGAKQAIRDVFKRFGVAEYELTNITKKIRFGDSLSTAYEK 414

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
             IA    FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+     
Sbjct: 415  NIA----FRQIINSKLEYQKAFDIAKKIEGNPRQTSVHAAGVVMSDNDLTDQIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IPFDDHET 608
             D+ +TQ++   +E  GL+K DFLGL+ LT +Q+ +    Q+  ++D+ +  I  +D +T
Sbjct: 469  EDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQR-MKEAVQKKYEIDIQIESIDLEDKKT 527

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G+
Sbjct: 528  LQLFAAGDTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGR 587

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E +VSI   +D +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM K 
Sbjct: 588  EAVVSIDESLDDILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNALEMHKM 647

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F+SGA K G S+  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 648  EEEFVSGAMKLGHSEKKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPEVFF 707

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA  F  ++ P ++NT     K  +N+I+  L  IKG+   
Sbjct: 708  DVLLNYSSSD------YITDALSFGFKLAPLTINTVPYHDKFEENQIFLGLKNIKGLPRD 761

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E   ++PF  +EDF  R+ S+      L  LV  G  D F  +R +++ +L N+
Sbjct: 762  LAYWIIE---ERPFTGIEDFLLRLPSQYRKESSLIPLVQIGLFDSFEPNRQKIISNLSNL 818

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGH 966
                             IF  E G+     +      E+ S   +FE EQ +LG   S H
Sbjct: 819  ----------------FIFVEELGSLFADSSYSWTEAEDYSQAEKFELEQSILGVGLSDH 862

Query: 967  PLDVYKPILRKMGI-KGYEESVATI----RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            PL         M I K   ES + I      +  ++ A V S +  +T+ G  + ++  +
Sbjct: 863  PL---------MTIAKATTESFSWIGDLAENSRAKILAQVQSIKVIRTKNGENMAFLQVT 913

Query: 1022 EPAKEYEANFFP 1033
            +  K+ +   FP
Sbjct: 914  DTKKKLDVTLFP 925


>gi|331270939|ref|YP_004385650.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925]
 gi|329127331|gb|AEB77275.1| DNA polymerase III, alpha subunit [Clostridium botulinum BKT015925]
          Length = 1171

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 273/820 (33%), Positives = 431/820 (52%), Gaps = 83/820 (10%)

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           RI L+ L+E   + LI+ +   +G I++A    + + A++  L +K++F D  Y+ LQ H
Sbjct: 101 RIDLNQLKEF-KDDLIIGSACLAGKINKA---TTYEQAKQYALEYKEIFSDNFYLELQAH 156

Query: 190 RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              D+ + ++ +++L Y   +P + T++S ++ +ED E H      A+   V++K+    
Sbjct: 157 TSEDQIKANKRLMKLHYDTNIPYIITSDSHYVKKEDKENH------ANFVNVNRKNADVT 210

Query: 249 TP-----DHYLKNRSEMVSIF--SDLPE-----ALENTVEIARRCSFILQVHAPILPRFI 296
           T      D Y+ +  EM  I   S+L E      L+NT +IA  C+  +Q H P+LP   
Sbjct: 211 TTGEIYDDCYIHSTDEMYEIMFKSELTEDEITIGLQNTNKIADICNGTIQFHEPVLP--- 267

Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG--YHAQDYRQRLDFELNVIARMKFS 354
           E +  +  K EE         G + R     I     +  QDY+QR+  E NVI +M++ 
Sbjct: 268 EVKIPNEYKSEEEYFMALITKGWKDRNMDEQIKNDLLHTEQDYKQRVLHEYNVIKQMEYI 327

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            Y LIVAD++QWA    IP  P RGS  GS+ AY L IT+I+PL++ LLFER+LNP+R+S
Sbjct: 328 SYHLIVADYMQWAVNQRIPTAPARGSAGGSLIAYLLKITNINPLKYDLLFERYLNPERVS 387

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           +PD D DF   RR+EV +Y+Q  YG E VAQII F     K A++D G+ +++P   V+ 
Sbjct: 388 LPDIDSDFSSGRREEVFKYLQQTYGEEYVAQIINFSKYTPKVAIQDAGKMIKVPIKDVNV 447

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           + + + +D     S+Q   ++ +  +   + P    +L +++  EG  +  ST+A G VI
Sbjct: 448 IKEFMQDDTIDD-SIQNAKNNKKLIDLLNSYP---EMLSLAKSFEGRVKTTSTNACGTVI 503

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +P+ Q   M +   +D  + Q +    EK G++K D LG   L ++ + +  +A    
Sbjct: 504 SSKPIYQYCGM-KKGDNDEQLLQVDKVITEKLGMVKCDILGTTVLQIIDEVMK-MADMDF 561

Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               + IP DD ETY         G+FQL S  M +    +QP  IEDI   +S YRPG 
Sbjct: 562 YDLYTKIPLDDKETYEFFKKGLYYGVFQLGSYNMTKFFMKLQPKSIEDICLGISAYRPGS 621

Query: 655 ---IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
              ID+I+   NRK GKE IV  H +++P+LK T G+ +YQEQVMQ+ Q + G+S ++AD
Sbjct: 622 MKYIDDII---NRKEGKEPIVYDHEVLEPILKPTYGICVYQEQVMQVLQAMGGFSFAQAD 678

Query: 712 VLRRAMGKKIKEEMDKQKERF---------------------------------ISGASK 738
           ++RR M KK  + +  Q+  F                                 I GA  
Sbjct: 679 LVRRGMAKKKAQYVLGQRNNFIYGLVEFTIDGTRCTTTYELAKEYLNDIEYTVVIEGAIH 738

Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            GI   IA  +F+ L  FA YGFNKSH  AYA+++Y TA++K HYP  F+   ++   D 
Sbjct: 739 KGIEIKIAKKVFDDLEDFALYGFNKSHGLAYALLAYYTAYLKCHYPTYFMKTILSHAKDG 798

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
           +E I ++    +   ++++ P++N   + F V +  I Y + ++  VG  T R IM    
Sbjct: 799 ME-IAQYLTQCKDLCVKVVHPNINESNLGFSVYNGSILYGIGSLYNVGEPTTRQIMNK-- 855

Query: 859 DKPFDSLEDFCSR------VDSKKLNRRVLESLVFAGALD 892
            +P+ S EDF ++       D  K+++  L SL+ +G  D
Sbjct: 856 -RPYTSFEDFINKNVNNIAEDEIKIDKSALISLINSGCFD 894


>gi|306825369|ref|ZP_07458709.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304432307|gb|EFM35283.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 1033

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 301/961 (31%), Positives = 476/961 (49%), Gaps = 105/961 (10%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +AI D +NL+ A  F +     GIQP+IG
Sbjct: 4   QLDTKTVYSFMESVISIEKYVQTAKEYGYSHLAIMDVDNLYGAYHFLEVTRKYGIQPLIG 63

Query: 73  CQLD-IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            ++  I  ++N+              S+  L  + +GYQ L++L +   L   G+++   
Sbjct: 64  LEMTLIKDEENI--------------SLRFLALSTKGYQELMKLST---LKMTGRKNWSD 106

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             S L+++    +    G     +   +F   S    + + T       RL + L +   
Sbjct: 107 FTSHLEDVAI-IVPYFNGVEQLDLGHDYFIGVSPDTPQEVFT-------RLILPLYQVNS 158

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
           +++  + QV+Q+       L A  +++ L E D  +   +              P    +
Sbjct: 159 FEK-EDIQVLQI-------LSAVKDNVSLREVDVHSQQGIFL------------PASDLE 198

Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQKEEENE 310
              KNR           +AL N   +    S+  Q+   + LPRF      + ++    E
Sbjct: 199 ARFKNR---------FSQALANLQGLIENVSY--QIDPSLKLPRF------NPERPAVEE 241

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           LR +A         QG   KG  +  Y +RL+ EL VI  M F  YFL+V D +++ +  
Sbjct: 242 LRERA--------EQGLSDKGLTSAIYHERLNEELAVIHDMGFDDYFLVVWDLLRFGRSQ 293

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
              +G GRGS  GS+ AY+L IT IDP+  +L+FERFLN +R +MPD DID     R E 
Sbjct: 294 GYYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDLYRPEF 353

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
           IRYV+++YG + VAQI+T+ +  AK A+RDV +   +P  ++  + K I           
Sbjct: 354 IRYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKIS---FRDTLTT 410

Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
           A   + +FR+   +     +  EI++K+EG  R  S HAAG+V+ D+ L+  +P+     
Sbjct: 411 AYEKNLQFRQVINSKIEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDLTDYIPL--KYG 468

Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
            D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + LA+  GV + +  I  +D  T 
Sbjct: 469 EDMLITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQELLAESEGVHLKIEEIDLEDKATL 528

Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
            L     T GIFQ E  G  + L+ +QP   E+++A  SL RPG  D I  +  RK+GKE
Sbjct: 529 ALFAAGNTKGIFQFEQPGAIRLLKRVQPQVFEEVVATTSLNRPGASDYIDNFVARKHGKE 588

Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
           K+  + P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK  +EM   K
Sbjct: 589 KVTVLDPALEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAKEMHLMK 648

Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
           E FI+GA K G ++  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649 EDFITGAMKLGHTEEKANQVFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFFQ 708

Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
             +     +      +  DA Q   ++ P ++N+     K+   +IY  L AIKG+    
Sbjct: 709 VMLNYSSSD------YIVDALQMGFEVAPLAINSIPYHDKIAQKKIYLGLKAIKGMPRDF 762

Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
           +  I+E   ++PF S+EDF +R+        +L  LV  G  D F  +R ++L +L N+ 
Sbjct: 763 SYWIIE---NRPFSSVEDFVTRLPKNYKKLSLLTPLVELGLFDEFDKNRQKILVNLPNL- 818

Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN--SSVRFENEQRVLGFYFSGHP 967
                           +F  E G      T      ++   + +F  EQ ++G   S HP
Sbjct: 819 ---------------FVFVEELGGLFADTTYSWTEADDFTEAEKFYKEQELIGVGISAHP 863

Query: 968 L 968
           L
Sbjct: 864 L 864


>gi|300900778|ref|ZP_07118922.1| DNA polymerase III, alpha subunit [Escherichia coli MS 198-1]
 gi|300355727|gb|EFJ71597.1| DNA polymerase III, alpha subunit [Escherichia coli MS 198-1]
          Length = 570

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/579 (41%), Positives = 351/579 (60%), Gaps = 22/579 (3%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
           +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59  DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA +  LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F      D+  E+   +R K   GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF---PTGDMSTEDYLVMRAKE--GL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAK 562


>gi|324014098|gb|EGB83317.1| DNA polymerase III, alpha subunit [Escherichia coli MS 60-1]
          Length = 564

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/576 (41%), Positives = 348/576 (60%), Gaps = 22/576 (3%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
           +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59  DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR 559


>gi|300812161|ref|ZP_07092605.1| DNA polymerase III, alpha subunit [Lactobacillus delbrueckii subsp.
            bulgaricus PB2003/044-T3-4]
 gi|300496846|gb|EFK31924.1| DNA polymerase III, alpha subunit [Lactobacillus delbrueckii subsp.
            bulgaricus PB2003/044-T3-4]
          Length = 1164

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 310/1021 (30%), Positives = 494/1021 (48%), Gaps = 68/1021 (6%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  S+ ++L   +   +++         A+A+TD N  F   +F Q+A  AGI+P++G 
Sbjct: 6    LQTISANTILASPMKTADLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLG- 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                 +Q   K     +  +     +V L  + +GYQ L+ L S + +           L
Sbjct: 65   -----LQGRFKGVELEEAEY----DLVFLAQSQKGYQSLMRLSSFLNIASGDLAGPAPSL 115

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL---QRHR 190
            S L E+    +I+  G +S         NS +   K+L  F    G  LY+ +   +   
Sbjct: 116  SDLPELSDLTVIVPAGLTSELRQLNKLRNSGEEYVKKLQAFLPK-GLPLYLGVYPAESAA 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             YD Y    V +LA    LP+    +  +L   D     VL A+    V+ + +   +  
Sbjct: 175  AYDAY----VKKLAEISALPITVVEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAE 230

Query: 251  ---DHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                H+L+    +     +  L EAL N+ +IA  C   +    P LP F +        
Sbjct: 231  GQGSHWLRPAPVLEDACREMGLEEALANSGKIAASCHAKIPFKEPQLPVFPQATG----L 286

Query: 306  EEENELRNKAVAGLE-VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              +  L   A AGLE + L QG     YHA     RL  EL VI +M F+ YFLIV D +
Sbjct: 287  SSDQYLEKLAFAGLEKLGLRQGI----YHA-----RLQKELAVIQQMGFADYFLIVGDIV 337

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             + ++    VGPGRGS AGS+ AYAL IT IDPL++ LLFERFLNP R  MPD D+DF  
Sbjct: 338  NYCRQRGALVGPGRGSAAGSLVAYALGITQIDPLKYDLLFERFLNPARADMPDIDLDFTT 397

Query: 425  DRRDEVIRYVQNKYG--------HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
              R     YVQ KYG         + VA+I+   +++AK+ L   G+   +    + RL 
Sbjct: 398  SGRKLAFAYVQEKYGAKARFGEGSDLVARILALTTMKAKSVLERTGQVFGLTLPAIARLK 457

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            + +        +L      + F+    A P    L + + +LEGL     THA G+VI +
Sbjct: 458  QAM----GAAKTLAEAGQQTEFKALVAASPLTRLLYQTAARLEGLPEDTGTHAPGLVISE 513

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
             PLS+ + +     + L   +   K++EK GL+K DFL L  L LL+  L  + +    +
Sbjct: 514  EPLSRQIGLMTGKEAPLWTVEQTKKYVEKYGLLKIDFLTLDNLELLEGVLAEIQKSSGPL 573

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL+ +P DD +T  L     T  IFQ  SSGM++ L  +QP   +D+   V+LYRPGPI 
Sbjct: 574  DLTRLPLDDPDTLRLFARGETQQIFQFNSSGMQEVLRKIQPRTFDDLSVAVALYRPGPIA 633

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +I +Y  RKNG   +    P +  +L  T G+ +YQEQVMQ A++ +G+SL+EADV R A
Sbjct: 634  SIPLYVARKNGTSPVQYPDPSLKEVLGPTYGIFVYQEQVMQTARIFAGFSLAEADVFRNA 693

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + KK    + ++K +F++GA + G S+  A  ++ L+  FA+YGFN SHA AYA+++Y  
Sbjct: 694  ISKKQAGLLAEEKGKFVAGAVRKGHSRQAAEAVYALIEPFANYGFNHSHAVAYALLAYWQ 753

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++  H+P EF      L     ++     + AR+  ++I+ P +N    + ++ + RIY
Sbjct: 754  AFLSVHFPREFYLEK--LRASRGKEKGAIIRQARKAGVEILGPDINLSQAEARLFEGRIY 811

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  I G+       ++  +  +P  S   F  ++D+K+L  + L  L+ AG  D    
Sbjct: 812  LGLKDIMGITPAFLDQLL--ALKRPVTSFPAFLRQLDTKELKEKQLVPLIEAGLFDQVSP 869

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LL +  N+   A+  +K+     ++  A ++         E   +   + +   E+
Sbjct: 870  NRASLLVNCGNMLNTARLSQKSLV--LQDFLAAKE---------ENVPMPTPAEKVAMEE 918

Query: 957  RVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            R +GF  +  PL++  K + ++ G K +        G  +   A  + K   + ++G+R 
Sbjct: 919  RAMGFAVTASPLEIAGKALAKRYGAKPFAGLALNETGQVL---AQFIKKNDWRVKRGARA 975

Query: 1016 G 1016
            G
Sbjct: 976  G 976


>gi|171779317|ref|ZP_02920281.1| hypothetical protein STRINF_01162 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
 gi|171281934|gb|EDT47365.1| hypothetical protein STRINF_01162 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
          Length = 1035

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 309/1032 (29%), Positives = 509/1032 (49%), Gaps = 115/1032 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   + +        I I D +NL++A  F  KA + G++P+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLEGYVKEAKVLGYQTIGIMDKDNLYAAFHFITKAKSEGLRPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L +++Q+NL +            S+ L+     GY+ L+++ SR        + ++
Sbjct: 62   LGLELTLNLQENLSL------------SVYLIARDTTGYKNLMKVSSRQMTSGIQVEDLK 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RH 189
              LS        GL+++     G              E   L F+   G    VN+    
Sbjct: 110  DYLS--------GLVVIIPDFDG-------------LESLSLPFEYYIG----VNVHSEE 144

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            R YD+               PL+  +   + +  + E   +L A+  +  +S KD     
Sbjct: 145  RDYDK---------------PLIPLHTVRYFNTNEVETLHMLHAIRDN--ISLKDASAAP 187

Query: 250  PDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                L     +   F    P+ALEN  ++     +        LPRF      + QK  +
Sbjct: 188  QGQQLMACDILTQAFEQKFPQALENLEKLVAEIHYDFNSELK-LPRF------NRQKPAQ 240

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL     AGL+        AK     +Y++RL  EL+VI +M F  YFLIV D +++ +
Sbjct: 241  EELIELTEAGLK--------AKNLWLPEYQERLAKELSVIHKMGFDDYFLIVWDLLRFGR 292

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                 +G GRGS AGS+ +YAL IT IDP++ +LLFERFLN +R SMPD DID     R 
Sbjct: 293  SRGYYMGMGRGSAAGSLVSYALDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYRS 352

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAHPV 487
            E + YV+N+YG    AQI+TF +  AK A+RDV +    P  ++  + K I   D    V
Sbjct: 353  EFLHYVRNRYGSLHSAQIVTFSTFGAKQAIRDVFKRFGAPEHELTNITKKISFKDNLTSV 412

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              + +A    FR+   A     +   I++++EG  R  S HAAG+V+ D  L++ +P+  
Sbjct: 413  YEKNLA----FRQIINAKIEYQKAFAIAKRIEGNPRQTSIHAAGVVMSDDNLTEHIPL-- 466

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  + +A+  G+ +D+  I  +D 
Sbjct: 467  KAGEDMMITQYDAAAVEANGLLKMDFLGLRNLTFVQRMQEKVAKDYGINIDVKSIDLEDQ 526

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T GIFQ E +G    L+ ++P   EDI+A  SL RPG  D    +  R+ 
Sbjct: 527  QTLALFAAGKTKGIFQFEQAGAINLLKRIKPQKFEDIVATTSLNRPGASDYTENFIRRRF 586

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E I  I PL+  +L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  E+M 
Sbjct: 587  GQEAIDLIDPLVAKILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKKAEDMQ 646

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +  F+ GA   G     A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 647  KMESEFLKGAQALGRPLETAKDLFSRMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 706

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F    +     +      +  DA +   +I    +NT   + K+ D +IY  L  ++ + 
Sbjct: 707  FYDVMLNYSSAD------YITDAMESEFRIKKIDINTVPYNDKIADGQIYLGLKNLRALP 760

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                  I++    +PF S+EDF +++      + ++  LV  GA D F  +R +++++L+
Sbjct: 761  RDLCYWIID---HRPFSSIEDFLTKLPENYQKKELITPLVEVGAFDNFEKNRRKIIENLE 817

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN--SSVRFENEQRVLGFYFS 964
             +                 IF +E G+   + +     VE+  ++ ++  EQ +LG   S
Sbjct: 818  PL----------------FIFVNELGSLFAENSYNWIEVEDFPNTEKYRQEQGLLGVGIS 861

Query: 965  GHP-LDVYK--PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             HP L++ K   +        +E + ATI    + L+ + V + +    KG ++ ++  +
Sbjct: 862  PHPLLEIAKNSSVAFTALADLHENTEATIL---VELSQIRVIRTKT---KGEQMAFLNVT 915

Query: 1022 EPAKEYEANFFP 1033
            +  K+++   FP
Sbjct: 916  DTQKKFDVTLFP 927


>gi|313123522|ref|YP_004033781.1| DNA polymerase iii, alpha subunit (dnae) [Lactobacillus delbrueckii
            subsp. bulgaricus ND02]
 gi|312280085|gb|ADQ60804.1| DNA polymerase III, alpha subunit (DnaE) [Lactobacillus delbrueckii
            subsp. bulgaricus ND02]
          Length = 1159

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 308/1021 (30%), Positives = 496/1021 (48%), Gaps = 68/1021 (6%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            +Q  S+ ++L   +   +++         A+A+TD N  F   +F Q+A  AGI+P++G 
Sbjct: 1    MQTISANTILASPMKTADLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLG- 59

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                 +Q   K     +  +     +V L  + +GYQ L+ L S + +           L
Sbjct: 60   -----LQGRFKGIELEEAEY----DLVFLAQSQKGYQSLMRLSSFLNIASGDLAGPAPSL 110

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL---QRHR 190
            + L E+    +I+  G +S         NS +   K+L  F    G  LY+ +   +   
Sbjct: 111  ADLPELSDLTVIVPAGLTSELRQLNKLRNSGEEYVKKLQAFLPK-GLPLYLGVYPAESAA 169

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             YD Y    V +LA    LP+    +  +L   D     VL A+    V+ + +   +  
Sbjct: 170  AYDAY----VKKLAEISALPITVVEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAE 225

Query: 251  ---DHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                H+L+    +     +  L EAL N+ +IA  C   +    P LP F +        
Sbjct: 226  GQGSHWLRPAPVLEDACREMGLEEALANSGKIAASCHAKIPFKEPQLPVFPQATG----L 281

Query: 306  EEENELRNKAVAGLE-VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              +  L   A AGLE + L QG     YHA     RL  EL VI +M F+ YFLIV D +
Sbjct: 282  SSDQYLEKLAFAGLEKLGLRQGI----YHA-----RLQKELAVIQQMGFADYFLIVGDIV 332

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             + ++    VGPGRGS AGS+ AYAL IT IDPL++ LLFERFLNP R  MPD D+DF  
Sbjct: 333  NYCRQRGALVGPGRGSAAGSLVAYALGITQIDPLKYDLLFERFLNPARADMPDIDLDFTT 392

Query: 425  DRRDEVIRYVQNKYG--------HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
              R     YVQ KYG         + VA+I+   +++AK+ L   G+   +    + RL 
Sbjct: 393  SGRKLAFAYVQEKYGAKARFGEGSDLVARILALTTMKAKSVLERTGQVFGLTLPAIARLK 452

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            + +        +L      + F+    A P    L + + +LEGL     THA G+VI +
Sbjct: 453  QAM----GAAKTLAEAGQQAEFKALVAASPLTRLLYQTAARLEGLPEDTGTHAPGLVISE 508

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
             PLS+ + +     + L   +   K++EK GL+K DFL L  L LL+  L  + +    +
Sbjct: 509  EPLSRQIGLMTGKEAPLWTVEQTKKYVEKYGLLKIDFLTLDNLELLEGVLAEIQKSSGPL 568

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL+ +P DD +T  L     T  IFQ  SSGM++ L  +QP   +D+   V+LYRPGPI 
Sbjct: 569  DLTRLPLDDPDTLRLFARGETQQIFQFNSSGMQEVLRKIQPRTFDDLSVAVALYRPGPIA 628

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +I +Y  RKNG   +    P +  +L  T G+++YQEQVMQ A++ +G+SL+EADV R A
Sbjct: 629  SIPLYVARKNGTSPVQYPDPSLKEVLGPTYGILVYQEQVMQTARIFAGFSLAEADVFRNA 688

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + KK    + ++K +F++GA + G S+  A  ++ L+  FA+YGFN SHA AYA+++Y  
Sbjct: 689  ISKKQAGLLAEEKGKFVAGAVRKGHSRQAAEAVYALIEPFANYGFNHSHAVAYALLAYWQ 748

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++  H+P EF      L     ++     + AR+  ++I+ P +N    + ++ + RIY
Sbjct: 749  AFLSVHFPREFYLEK--LRASRGKEKGAIIRQARKAGVEILGPDINLSQAEARLFEGRIY 806

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  I G+       ++  +  +P  S   F  ++D+K+L  + L  L+ AG  D    
Sbjct: 807  LGLKDIMGITPAFLDQLL--ALKRPVTSFPAFLRQLDTKELKEKQLVPLIEAGLFDQVSP 864

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LL +  N+   A+  +K+     ++  A ++         E   +  ++ +   E+
Sbjct: 865  NRASLLVNCGNMLNTARLSQKSLV--LQDFLAAKE---------ENVPMPTAAEKVAMEE 913

Query: 957  RVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            R +GF  +  PL++  K + ++ G K +        G  +   A  + K   + ++G+R 
Sbjct: 914  RAMGFAVTASPLEIAGKALAKRYGAKPFAGLALNETGQVL---AQFIKKNNWRVKRGARA 970

Query: 1016 G 1016
            G
Sbjct: 971  G 971


>gi|297624571|ref|YP_003706005.1| DNA polymerase III subunit alpha [Truepera radiovictrix DSM 17093]
 gi|297165751|gb|ADI15462.1| DNA polymerase III, alpha subunit [Truepera radiovictrix DSM 17093]
          Length = 1719

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/457 (49%), Positives = 309/457 (67%), Gaps = 17/457 (3%)

Query: 317 AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           A LE   AQG +++   A    +R ++EL VI  M F  YFLIVADFI WAK   I VGP
Sbjct: 414 AHLEKLKAQGGVSE--EALTILERAEYELGVIIAMGFPDYFLIVADFINWAKSQGIAVGP 471

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYA  ITDIDPL F LLFERFLNPDR+SMPDFD+DF   RR EV+ YV+ 
Sbjct: 472 GRGSGAGSLVAYATRITDIDPLAFDLLFERFLNPDRVSMPDFDVDFSDARRMEVVDYVRR 531

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN--DPAHPVSLQAIAD 494
           KYG E+VAQI TFG++ +KAA+RD  R L++PY+  D + KLIP     + P+  +A+ +
Sbjct: 532 KYGEEKVAQIATFGTMASKAAVRDAARVLEVPYADADAVSKLIPVVFGRSTPIK-KALEE 590

Query: 495 DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
            S  R   L +      ++++  LEGL RHAS HAAG++I   P+ +L P++R    D P
Sbjct: 591 VSEIRT--LYEGGAKEFMDVAMTLEGLTRHASVHAAGVIIAREPIQELAPVFRS--GDGP 646

Query: 555 -VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLL 612
            V Q++M  +E+ G +K DFLGL+TLT ++ ++  + + RGV +D    P  D +T+ LL
Sbjct: 647 IVCQYDMGSVEELGFLKMDFLGLRTLTFIETAVRIIEESRGVTLDPDAFPQGDPKTFELL 706

Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI- 671
           +     G+FQ ES GM   L+ ++P+ I+D+IA+ +LYRPGP++NI  Y  R +G E++ 
Sbjct: 707 SRGEAAGVFQFESPGMVDTLKKLRPNRIQDLIAVSALYRPGPMENIPTYIRRHHGLEEVD 766

Query: 672 -VSIHPL----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +  P+    + P+L+ET G+ +YQEQ+MQIAQ ++GY+L EAD+LRRAMGKK  EEM 
Sbjct: 767 YTAQFPVAGEYLAPILEETYGIPVYQEQIMQIAQAVAGYTLGEADLLRRAMGKKKVEEML 826

Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
           KQ+E F++GA+K GI    A  IF+LL KFA+YGFNK
Sbjct: 827 KQREVFLAGAAKKGIPAAEASAIFDLLEKFANYGFNK 863



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/285 (32%), Positives = 144/285 (50%), Gaps = 13/285 (4%)

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
             D   + SH+AAY  +SYQTA++K HYPVEF AA +T+E  + +K+ ++  DAR+  +Q+
Sbjct: 1288 GDLIVHNSHSAAYGALSYQTAYLKAHYPVEFTAALLTVERGDSDKVAQYVTDARKLGVQV 1347

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            +PP +N    DF      + + L  IK VG     HI+E     PF  L DFC RVDS  
Sbjct: 1348 LPPDINESRSDFTPVGEVVRFGLYGIKNVGDGAVEHILEVRKAGPFKDLFDFCKRVDSSL 1407

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            +N+R LE LV AGA D  G  R  +L +L++  K+     +       ++F  E+     
Sbjct: 1408 VNKRALEHLVKAGAFDKLG-DRSAMLANLESAMKWGAAQREQAAAGQLSLFGAEE-VKPP 1465

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK-----MGIKG-YEESVATI 990
            ++ +EK       +RFE E   LG Y S HP++ Y  +         G++  Y E VA  
Sbjct: 1466 EVKVEKPYSTLELLRFEKE--ALGLYISDHPMNSYPGLAHAASCTVAGLEACYRELVAAS 1523

Query: 991  RGNN---IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            RG     + LA ++ +  +K  R G+ + +   ++     E   F
Sbjct: 1524 RGETRQRLVLAGIMQNVVKKAARSGNMMAFFDLTDETGSKEVVAF 1568



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 142/299 (47%), Gaps = 24/299 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           F HL  H++YSLL+GA  + +++   K  + + P +A+TD  N+  A+EF + A   G++
Sbjct: 27  FAHLHQHTAYSLLDGAARIKDLMAWVKEVSPENPTVAMTDHGNMHGAVEFYKTAEKFGVK 86

Query: 69  PIIGCQLDIDMQDNL-KMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           PI+G +  +       K    G +        + LL    +GYQ L +L SR +L +   
Sbjct: 87  PILGFEAYVTAGSRFEKRRPAGASKLDGGYFHLTLLAKNFKGYQNLCKLNSRGWL-EGFY 145

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              R+    L+E  +EG+I L+G     + R       +  E+ L  +  ++GD  ++ L
Sbjct: 146 MKPRVDHELLREY-SEGVIALSGCLGAQLPRYLLDLGEEAGEEILKQYLDIYGDNFFIEL 204

Query: 187 QRH------RGYDRYRE---------SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
           Q H         +  RE           +  LA+ + L +VATN+  ++ + D +AH+ L
Sbjct: 205 QNHVPENPSEMTESLRELTEQQTRLNPMLKSLAHKYGLGMVATNDGHYVKKGDAKAHEAL 264

Query: 232 MAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQV 287
           +A+   T +S  +R R   D  Y+K   EM      S+   AL N+V +A  C+  L +
Sbjct: 265 LAIQTKTTLSDPNRFRFPCDEFYVKTPEEMARAIPESEYEGALSNSVLVAEMCNVELPI 323


>gi|300920134|ref|ZP_07136585.1| DNA polymerase III, alpha subunit [Escherichia coli MS 115-1]
 gi|300412831|gb|EFJ96141.1| DNA polymerase III, alpha subunit [Escherichia coli MS 115-1]
          Length = 566

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/576 (40%), Positives = 348/576 (60%), Gaps = 22/576 (3%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
           +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59  DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR 559


>gi|325125570|gb|ADY84900.1| DNA polymerase III alpha-chain [Lactobacillus delbrueckii subsp.
            bulgaricus 2038]
          Length = 1164

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 307/1021 (30%), Positives = 497/1021 (48%), Gaps = 68/1021 (6%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  S+ ++L   +  ++++         A+A+TD N  F   +F Q+A  AGI+P++G 
Sbjct: 6    LQTISANTILASPMKTDDLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLG- 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                 +Q   K     +  +     +V L  + +GY+ L+ L S + +           L
Sbjct: 65   -----LQGRFKGIELEEAEY----DLVFLAQSQKGYKSLMRLSSFLNIASGDLAGPAPSL 115

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL---QRHR 190
            + L E+    +I+  G +S         NS +   K+L  F    G  LY+ +   +   
Sbjct: 116  ADLPELSDLTVIVPAGLTSELRQLNKLRNSGEEYVKKLQAFLPK-GLPLYLGVYPAESAA 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             YD Y    V +LA    LP+    +  +L   D     VL A+    V+ + +   +  
Sbjct: 175  AYDAY----VKKLAEISALPITVVEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAQ 230

Query: 251  ---DHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                H+L+    +     +  L EAL N+ +IA  C   +    P LP F +        
Sbjct: 231  GQGSHWLRPAPVLEDACREMGLEEALANSGKIAASCQAKIPFKEPQLPVFPQATG----L 286

Query: 306  EEENELRNKAVAGLE-VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              +  L   A AGLE + L QG     YHA     RL  EL VI +M F+ YFLIV D +
Sbjct: 287  SSDQYLEKLAFAGLEKLGLRQGI----YHA-----RLQKELAVIQQMGFADYFLIVGDIV 337

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             + ++    VGPGRGS AGS+ AYAL IT IDPL++ LLFERFLNP R  MPD D+DF  
Sbjct: 338  NYCRQKGALVGPGRGSAAGSLVAYALGITQIDPLKYDLLFERFLNPARADMPDIDLDFTT 397

Query: 425  DRRDEVIRYVQNKYG--------HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
              R     YVQ KYG         + VA+I+   +++AK+ L   G+   +    + RL 
Sbjct: 398  SGRKLAFAYVQEKYGAKARFGEGSDLVARILALTTMKAKSVLERTGQVFGLTLPAIARLK 457

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            + +        +L      + F+    A P    L + + +LEGL     THA G+VI +
Sbjct: 458  QAM----GAAKTLAEAGQQAEFKALVAASPLTRLLYQTAARLEGLPEDTGTHAPGLVISE 513

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
             PLS+ + +     + L   +   K++EK GL+K DFL L  L LL+  L  + +    +
Sbjct: 514  EPLSRQIGLMTGKEAPLWTVEQTKKYVEKYGLLKIDFLTLDNLELLEGVLAEIQKSSGPL 573

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL+ +P DD +T  L     T  IFQ  SSGM++ L  +QP   +D+   V+LYRPGPI 
Sbjct: 574  DLTRLPLDDPDTLRLFARGETQQIFQFNSSGMQEVLRKIQPRTFDDLSVAVALYRPGPIA 633

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +I +Y  RKNG   +    P +  +L  T G+ +YQEQVMQ A++ +G+SL+EAD+ R A
Sbjct: 634  SIPLYVARKNGTSPVQYPDPSLKEVLGPTYGIFVYQEQVMQTARIFAGFSLAEADIFRNA 693

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + KK    + ++K++F++GA + G S+  A  ++ L+  FA+YGFN SHA AYA+++Y  
Sbjct: 694  ISKKQAGLLAEEKDKFVAGAVRKGHSRQAAEAVYALIEPFANYGFNHSHAVAYALLAYWQ 753

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++  H+P EF      L     ++     + AR+  ++I+ P +N    + ++ + RIY
Sbjct: 754  AFLSVHFPREFYLEK--LRASRGKEKGAIIRQARKAGVEILGPDINLSRAEARLFEGRIY 811

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  I G+       ++  +  +P  S   F  ++D+K+L  + L  L+ AG  D    
Sbjct: 812  LGLKDIMGITPAFLDQLL--ALKRPVTSFTAFLRQLDTKELKEKQLVPLIEAGLFDQVSP 869

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LL +  N+   A+  +K+     ++  A ++         E   +  ++ +   E+
Sbjct: 870  NRASLLVNCGNMLNTARLSQKSLV--LQDFLAAKE---------ENVPMPTAAEKVAMEE 918

Query: 957  RVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            R +GF  +  PL++  K + ++ G K +        G  +   A  + K   + ++G+R 
Sbjct: 919  RAMGFAVTASPLEIAGKALAKRYGAKPFAGLALNETGQVL---AQFIKKNDWRVKRGARA 975

Query: 1016 G 1016
            G
Sbjct: 976  G 976


>gi|148997019|ref|ZP_01824673.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP11-BS70]
 gi|168575555|ref|ZP_02721491.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae MLV-016]
 gi|169832805|ref|YP_001694350.1| DNA polymerase III DnaE [Streptococcus pneumoniae Hungary19A-6]
 gi|307067549|ref|YP_003876515.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae AP200]
 gi|147756719|gb|EDK63759.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP11-BS70]
 gi|168995307|gb|ACA35919.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183578569|gb|EDT99097.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae MLV-016]
 gi|306409086|gb|ADM84513.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae AP200]
          Length = 1033

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 309/969 (31%), Positives = 495/969 (51%), Gaps = 121/969 (12%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLG 63

Query: 73  CQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQS 128
            ++ +   D + NL+                 L  ++ GYQ+L++L  ++M    QG+++
Sbjct: 64  LEMTVFVDDQEVNLR----------------FLALSSVGYQQLMKLSTAKM----QGEKT 103

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +   +L++I     +++            +F+  +  E          G   Y+ +  
Sbjct: 104 WSVLSQYLEDIA----VIVP-----------YFDRVESLE---------LGCDYYIGV-- 137

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 Y E+   +  +   LPL   N        D E   VL A+  +  +  ++ P  
Sbjct: 138 ------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLR 185

Query: 249 TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           +      + S +  +F +  P+AL+N  ++    S+ L      LPRF      +  +  
Sbjct: 186 SRQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLK-LPRF------NPARPA 238

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             ELR +A  GL        + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ 
Sbjct: 239 VEELRERAELGL--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFG 290

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R
Sbjct: 291 RSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYR 350

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DP 483
            + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I        
Sbjct: 351 PDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +
Sbjct: 411 AYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYI 463

Query: 544 PM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
           P+ Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I
Sbjct: 464 PLKYGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEI 520

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +
Sbjct: 521 DLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNF 580

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK 
Sbjct: 581 VARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKD 640

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              M + +  FI G+ + G +   A  +F++L KFA YGFN+SHA AY+ +++Q A+ KT
Sbjct: 641 ASAMHEMRASFIQGSIEAGHTAEKAEQVFDVLEKFAGYGFNRSHAYAYSALAFQLAYFKT 700

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           HYP  F    + L   N +    +  DA +   ++ P S+NT     K+ +  IY  L +
Sbjct: 701 HYPAIFY--QIMLNSANSD----YVTDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKS 754

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           IKGV    A  I+E    +P+ ++EDF +++    L   +LE LV  G  D F  +R ++
Sbjct: 755 IKGVSNDLALWIIE---HRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKV 811

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVL 959
             +L N+ +                F  E G+ F D I + ++        +F  EQ +L
Sbjct: 812 FNNLANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELL 855

Query: 960 GFYFSGHPL 968
           G   S HPL
Sbjct: 856 GIGVSKHPL 864


>gi|182683841|ref|YP_001835588.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|182629175|gb|ACB90123.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
          Length = 1042

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 311/976 (31%), Positives = 500/976 (51%), Gaps = 121/976 (12%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           EK      L   + YS +E  +S+   +          +A+ D +NL+ A +F +     
Sbjct: 6   EKCKLIAQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKY 65

Query: 66  GIQPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYL 121
           GI P++G ++ +   D + NL+        F ++ S+        GYQ+L++L  ++M  
Sbjct: 66  GIHPLLGLEMTVFVDDQEVNLR--------FLSLSSV--------GYQQLMKLSTAKM-- 107

Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             QG+++  +   +L++I     +++            +F+  +  E          G  
Sbjct: 108 --QGEKTWSVLSQYLEDIA----VIVP-----------YFDRVESLE---------LGCD 141

Query: 182 LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +        Y E+   +  +   LPL   N        D E   VL A+  +  + 
Sbjct: 142 YYIGV--------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LP 187

Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            ++ P  +      + S +  +F +  P+AL+N  ++    S+ L      LPRF     
Sbjct: 188 LREVPLRSRQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLK-LPRF----- 241

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +  +    ELR +A  GL        + KG  +++Y+ RLD EL+VI  M F  YFL+V
Sbjct: 242 -NPARPAVEELRERAELGL--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVV 292

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            D +++ + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DI
Sbjct: 293 WDLLRFGRSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDI 352

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           D     R + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I 
Sbjct: 353 DIPDIYRPDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKIS 412

Query: 481 N----DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                  A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D
Sbjct: 413 FRDNLKSAYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISD 465

Query: 537 RPLSQLVPM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
           + L+  +P+ Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+
Sbjct: 466 QDLTNYIPLKYGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGI 522

Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            + +  I  +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG 
Sbjct: 523 HLKIEEIDLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGA 582

Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            D I  +  RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LR
Sbjct: 583 SDYINNFVARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILR 642

Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           RAMGKK    M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++
Sbjct: 643 RAMGKKDASAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAF 702

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
           Q A+ KTHYP  F    + L   N +    +  DA +   ++ P S+NT     K+ +  
Sbjct: 703 QLAYFKTHYPAIFY--QIMLNSANSD----YLIDALEAGFEVAPLSINTIPYHDKIANKA 756

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
           IY  L +IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F
Sbjct: 757 IYLGLKSIKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSF 813

Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRF 952
             +R ++  +L N+ +                F  E G+ F D I + ++        +F
Sbjct: 814 EKNRQKVFNNLANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKF 857

Query: 953 ENEQRVLGFYFSGHPL 968
             EQ +LG   S HPL
Sbjct: 858 YMEQELLGIGVSKHPL 873


>gi|324017809|gb|EGB87028.1| DNA polymerase III, alpha subunit [Escherichia coli MS 117-3]
          Length = 560

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/576 (40%), Positives = 348/576 (60%), Gaps = 22/576 (3%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
           +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59  DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR 559


>gi|146134269|dbj|BAF57223.1| DNA polymerase III subunit alpha [Streptococcus bovis]
          Length = 1035

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 309/1032 (29%), Positives = 508/1032 (49%), Gaps = 115/1032 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   + +        I I D +NL++A  F  KA + G++P+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLEGYVKEAKVLGYQTIGIMDKDNLYAAFHFITKAKSEGLRPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L +++Q+NL +            S+ L+     GY+ L+++ SR       + +  
Sbjct: 62   LGLELTLNLQENLSL------------SVYLIARDTTGYKNLMKVSSR-------QMTSG 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L  L+E    GL ++     G              E   L F    G  ++      R
Sbjct: 103  IQLEDLKEY-LSGLAVIIPYYDG-------------LESLSLPFDYYIGVDVH---SEER 145

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             YD+               PL+  +   + +  + E   +L A+  +  +S KD P    
Sbjct: 146  DYDK---------------PLIPLHTVRYFNTNEVETLHMLHAIRDN--ISLKDAPAAPQ 188

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               L     +   F    P+ALEN  ++     +        LPRF      + QK  + 
Sbjct: 189  GQQLMACDILTQAFEQKFPQALENLEKLVAEIHYDFNSELK-LPRF------NRQKPAQE 241

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL     AGL+        AK     +Y++RL  EL+VI +M F  YFLIV D +++ + 
Sbjct: 242  ELIELTEAGLK--------AKNLWLPEYQERLAKELSVIHKMGFDDYFLIVWDLLRFGRS 293

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ +YAL IT IDP++ +LLFERFLN +R SMPD DID     R E
Sbjct: 294  RGYYMGMGRGSAAGSLVSYALDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYRSE 353

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAHPVS 488
             + YV+N+YG    AQI+TF +  AK A+RDV +    P  ++  + K I   D    V 
Sbjct: 354  FLHYVRNRYGSLHSAQIVTFSTFGAKQAIRDVFKRFGAPEHELTNITKKISFRDNLSTVY 413

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             + ++    FR+   +     +   I++++EG  R  S HAAG+V+ D  L++ +P+   
Sbjct: 414  EKNLS----FRQIINSKIEYQKAFAIAKRIEGNPRQTSIHAAGVVMSDDNLTEHIPL--K 467

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHE 607
               D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  + +A+  G+ +D+  I  +D +
Sbjct: 468  AGEDMMITQYDAAAVEANGLLKMDFLGLRNLTFVQRMQEKVAKEYGITIDIKSIDLEDQQ 527

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T GIFQ E +G    L+ ++P   EDI+A  SL RPG  D    +  R+ G
Sbjct: 528  TLALFAAGKTKGIFQFEQAGAINLLKRIKPQKFEDIVATTSLNRPGASDYTENFIRRRFG 587

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E I  I PL+  +L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  E+M K
Sbjct: 588  QEAIDLIDPLVAKILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKKAEDMQK 647

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +  F+ GA   G     A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F
Sbjct: 648  MESEFLKGAQALGRPLETAKDLFSRMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVF 707

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
                +     +      +  DA +   +I    +N    + K+ D RIY  L  ++ +  
Sbjct: 708  YDVMLNYSSAD------YITDAMESEFRIKKIDINIVPYNDKIADGRIYLGLKNLRALPR 761

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                 I++    +PF S+EDF +++      + ++  LV  GA D F  +R +++++L+ 
Sbjct: 762  DLCYWIID---HRPFSSIEDFLTKLPENYQKKELITPLVEVGAFDNFEKNRRKIIENLEP 818

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  +         N+  ++FA     +   I +E F    ++ ++  EQ +LG   S HP
Sbjct: 819  LFMF--------VNELGSLFAENSYNW---IEVEDFP---NTEKYRQEQGLLGVGISPHP 864

Query: 968  LDVYKPILRKMGIKG------YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            L     I +   I        +E + ATI    + L+ + V + +    KG ++ ++  +
Sbjct: 865  L---LEIAKNSSIAFTALSDLHENTEATIL---VELSQIRVIRTKT---KGEQMAFLNVT 915

Query: 1022 EPAKEYEANFFP 1033
            +  K+++   FP
Sbjct: 916  DTQKKFDVTLFP 927


>gi|293365265|ref|ZP_06611982.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus oralis
           ATCC 35037]
 gi|307703806|ref|ZP_07640747.1| DNA polymerase III subunit alpha [Streptococcus oralis ATCC 35037]
 gi|291316715|gb|EFE57151.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus oralis
           ATCC 35037]
 gi|307622641|gb|EFO01637.1| DNA polymerase III subunit alpha [Streptococcus oralis ATCC 35037]
          Length = 1033

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 301/967 (31%), Positives = 477/967 (49%), Gaps = 117/967 (12%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +AI D +NL+ A  F +     GIQP+IG
Sbjct: 4   QLDTKTVYSFMESVVSIEKYVQMAKEYGYSHLAIMDVDNLYGAYHFLEVTRKYGIQPLIG 63

Query: 73  CQLD-IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            ++  I  ++N+              S+  L  + +GYQ L++L +   L   G+++   
Sbjct: 64  LEMTLIKDKENI--------------SLRFLALSTKGYQELMKLST---LKMTGRKNWSD 106

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             S L+++    +    G     +   +F   S    + + T                  
Sbjct: 107 FTSHLEDVAIV-VPYFNGVEQLDLGVDYFIGVSPDTPQEVFT------------------ 147

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR------ 245
                         +  LPL   N+     +ED +   +L AV  +  + + D       
Sbjct: 148 --------------SPILPLYQVNS---FEKEDIQVLQILSAVKDNVSLREVDLHSQQGI 190

Query: 246 --PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI-LPRFIEKECDD 302
             P    +   KNR          P+AL N   +    S+  Q+   + LPRF      +
Sbjct: 191 FLPASDLEARFKNR---------FPQALANLQGLIENVSY--QIDPSLKLPRF------N 233

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            ++    ELR +A         QG   KG  +  Y +RL+ EL VI  M F  YFL+V D
Sbjct: 234 PERPAVEELRERA--------EQGLSDKGLTSAIYHERLNEELAVIHDMGFDDYFLVVWD 285

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +++ +     +G GRGS  GS+ AY+L IT IDP+  +L+FERFLN +R +MPD DID 
Sbjct: 286 LLRFGRSQGYYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDIDIDI 345

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               R E IRYV+++YG + VAQI+T+ +  AK A+RDV +   +P  ++  + K I   
Sbjct: 346 PDLYRPEFIRYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKIS-- 403

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                   A   + +FR+   +     +  EI++K+EG  R  S HAAG+V+ D+ L+  
Sbjct: 404 -FRDTLTTAYEKNLQFRQIINSKIEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDLTDY 462

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
           +P+      D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + LA+  GV + +  I
Sbjct: 463 IPL--KYGEDMLITQYDAHGVEANGLLKMDFLGLRNLTFVQKMQELLAESEGVHLKIEDI 520

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +D ET  L     T GIFQ E  G  + L+ +QP   E+++A  SL RPG  D I  +
Sbjct: 521 DLEDKETLALFVAGNTKGIFQFEQPGAIRLLKRVQPQVFEEVVATTSLNRPGASDYIDNF 580

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK+GKEK+  + P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK 
Sbjct: 581 VARKHGKEKVTVLDPALEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKN 640

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EM   KE FI+GA K G ++  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ KT
Sbjct: 641 AKEMHLMKEDFITGAMKLGHTEEKANQVFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKT 700

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           HYP  F    +     +      +  DA Q   ++ P ++N+     K+   +IY  L A
Sbjct: 701 HYPAIFFQVMLNYSSSD------YIVDALQMGFEVAPLAINSIPYHDKIAQKKIYLGLKA 754

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           IKG+    +  I+E   ++PF S+EDF +R+        +L  LV  G  D F  +R + 
Sbjct: 755 IKGMPRDLSYWIIE---NRPFSSIEDFVTRLPKNYKKLSLLTPLVELGLFDEFDKNRQKN 811

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
           L +L N+  + + +          +FA    ++++    + F+    + +F  EQ ++G 
Sbjct: 812 LVNLPNLFVFVEEL--------GGLFADTNYSWTEA---DDFT---EAEKFYKEQELIGV 857

Query: 962 YFSGHPL 968
             S HPL
Sbjct: 858 GISPHPL 864


>gi|270292875|ref|ZP_06199086.1| DNA polymerase III, alpha subunit [Streptococcus sp. M143]
 gi|270278854|gb|EFA24700.1| DNA polymerase III, alpha subunit [Streptococcus sp. M143]
          Length = 1033

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 302/963 (31%), Positives = 480/963 (49%), Gaps = 109/963 (11%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +AI D +NL+ A  F +     GIQP+IG
Sbjct: 4   QLDTKTVYSFMESVVSIEKYVQTAKEYGYSHLAIMDVDNLYGAYHFLEVTRKQGIQPLIG 63

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            ++ + + +                S   L  + +GYQ L++L +   L   G+++    
Sbjct: 64  LEMTLIIDEK-------------ALSFRFLALSTKGYQELMKLST---LKMTGRKNWSDF 107

Query: 133 LSWLQEIGT-----EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            S L+++       EG+  L  G        +F   S    + + T       R  + L 
Sbjct: 108 TSHLEDVAVIVPYFEGIEQLDLGHD------YFIGISPDTPQEVFT-------RPILPLY 154

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           +   +++  + QV+Q+       L A  +++ L E D  +   +   A            
Sbjct: 155 QVNSFEK-EDIQVLQI-------LSAIKDNVSLREVDLHSQQGIFLPA------------ 194

Query: 248 VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                     S++ + F +  P+AL N   +     + L      LPRF      + ++ 
Sbjct: 195 ----------SDLEARFKNHFPQALANLQGLIENVDYQLDPSLK-LPRF------NPERP 237

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              ELR +A         QG   KG  +  Y +RL+ EL VI  M F  YFL+V D +++
Sbjct: 238 AVEELRERA--------EQGLSDKGLTSAIYHERLNEELAVIHDMGFDDYFLVVWDLLRF 289

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +     +G GRGS  GS+ AY+L IT IDP+  +L+FERFLN +R +MPD DID     
Sbjct: 290 GRSQGYYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDLY 349

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R E IRYV+++YG + VAQI+T+ +  AK A+RDV +   +P  ++  + K I       
Sbjct: 350 RPEFIRYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKIS---FRD 406

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               A   + +FR+   +     +  EI++K+EG  R  S HAAG+V+ D+ L+  +P+ 
Sbjct: 407 TLTTAYEKNLQFRQLINSKIEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDLTDYIPL- 465

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + LA+  GV + +  I  +D
Sbjct: 466 -KYGEDMLITQYDAHGVEANGLLKMDFLGLRNLTFVQKMQELLAESEGVHLKIEEIDLED 524

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T  L +   T GIFQ E  G  + L+ +QP   E+++A  SL RPG  D I  +  RK
Sbjct: 525 KATLALFSAGNTKGIFQFEQPGAIRLLKRVQPQVFEEVVATTSLNRPGASDYIDNFVARK 584

Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
           +GKEK+  + P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK  +EM
Sbjct: 585 HGKEKVTVLDPALEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAKEM 644

Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              KE FISGA K G S+  A   F ++ KFA YGFN+SHA AY+ +++Q A+ KTHYP 
Sbjct: 645 HLMKEDFISGAMKLGHSEEKANQFFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPA 704

Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            F    +           ++  DA Q   Q+ P ++N+     K+   +IY  L AIKG+
Sbjct: 705 IFFQVMLNYSS------SEYIVDALQMGFQVAPLAINSIPYHDKIAQKKIYLGLKAIKGM 758

Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
               +  I+E   ++PF S+EDF +R+        +L  LV  G  D F  +R ++L +L
Sbjct: 759 PRDFSYWIIE---NRPFSSVEDFVTRLPKNYKKLSLLTPLVELGLFDEFDKNRQKILVNL 815

Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            N+  + + +          +FA    ++++    + F+    + +F  EQ ++G   S 
Sbjct: 816 PNLFVFVEEL--------GGLFADTNYSWTEA---DDFT---EAEKFYKEQELIGVGISP 861

Query: 966 HPL 968
           HPL
Sbjct: 862 HPL 864


>gi|251770815|gb|EES51404.1| DNA-directed DNA polymerase [Leptospirillum ferrodiazotrophum]
          Length = 1109

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 318/1011 (31%), Positives = 503/1011 (49%), Gaps = 111/1011 (10%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQKA 62
           E S  F HL  H+ YS+L+G   +  ++++         AITD  NLF+    L   + A
Sbjct: 3   EVSQKFSHLHTHTQYSILDGMNKIPKLVEQSVESGIGGFAITDHGNLFALPEVLREQKTA 62

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              G++  +GC+  +   D L+   +  T   T      +     G + L++L ++ Y  
Sbjct: 63  NERGVKIAMGCEFYV-TDDRLQKNKESDTYHLTA-----IAKNNVGLESLMKLSTKAYT- 115

Query: 123 DQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
            +G  S  RI L  L E    GLI+L+G   G + +A    +   A   +  +  +FGD 
Sbjct: 116 -EGFYSHPRIDLDLLSE-HKNGLIVLSGCLGGQVAQALKDGNKAKAMDLVGAYHDIFGDN 173

Query: 182 LYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            ++ +      ++    + + +++    +  V T +  +  +E Y AHD  +A+   +++
Sbjct: 174 YFLEVMPLEIREQIDVNAAISEISKRTGIETVTTCDCHYQKKEHYAAHDTWLAIQTGSLL 233

Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
           S  DR R + D          + F    E LEN+       S +L+  + I+ R    E 
Sbjct: 234 SDPDRFRFSTDR---------AYFQTPEEVLENSKGAGLDESSMLRT-SMIMERISGYEI 283

Query: 301 DDIQK-----EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
           D   K         +LR  A +GL+    +G + +     DYR+RL++EL+VI ++ F  
Sbjct: 284 DKALKMPVIENAHEKLREMAFSGLQ---KKGLLNR----PDYRERLEYELDVIGKLGFDS 336

Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
           YFL+V   IQ AK N  P GPGRGS AGS+  + L ITD+DP++  L+FERFLNP R+S 
Sbjct: 337 YFLLVQKIIQIAKNNGTPTGPGRGSAAGSLVVWVLGITDLDPIKHGLIFERFLNPARVSP 396

Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
           PD D+D     R  VIR +  +YG  RVA I+T G    K  L+DV R   + +++ +  
Sbjct: 397 PDIDLDIGTKGRGGVIRSIVEEYGTARVATIMTLGLALDKMVLKDVMRTEGISFAEAN-- 454

Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                        ++ + D S       A P+   +LE ++ L G  R+  THAAGIVI 
Sbjct: 455 --------VATTGMKTLDDFSP------ATPTEHEVLERAKVLNGTVRNIGTHAAGIVIS 500

Query: 536 DRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
             PL   VP+     ++   +   Q +MK +++ G IK D LGLK L +L+   D   + 
Sbjct: 501 PEPLYGKVPLMSSKVAEENGILQLQLDMKAVDEWGYIKVDVLGLKELDILK---DLSKRT 557

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS-GMRQALEGMQPDCIEDIIALVSLYR 651
           G           D +T  +++   T G+FQL +S GM++ L  M+ D   D+ A +SL+R
Sbjct: 558 GADPKQEEF-MHDKDTLEMISVGETTGVFQLGTSEGMKRMLRDMKCDSFNDVCAALSLFR 616

Query: 652 PGPIDNIVVYN---NR---KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
           PGP+++ +V     N+   KNG E I S++P  D +L ET GV IYQEQ+M++ ++L+G+
Sbjct: 617 PGPLESGIVAQYIRNKELSKNG-EPIPSLNPRTDTLLAETYGVPIYQEQIMEMGKILAGF 675

Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            + EAD+LR+AMGKK  EEM K KE+++SG  KNGIS+  A+ +FE +  F+ YGFNKSH
Sbjct: 676 DMKEADLLRKAMGKKKPEEMAKMKEKWVSGCLKNGISEKEALELFEKVEHFSGYGFNKSH 735

Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
           +AAYA+ S + AW K HYP  + AA ++ E D VE      + A++  I ++PP +   C
Sbjct: 736 SAAYAITSMKMAWYKCHYPAHYWAAKISHEND-VESRGVMAESAKREGIVVVPPRI---C 791

Query: 826 VD----FKV---------------------GDNRIYYSLAAIKGVGTTTARHI-MEASAD 859
           V+    FK                      G++RI   +  +KGV    A  + +E + +
Sbjct: 792 VEENTLFKKHTGNNQETSHYPDLCAVIDHNGEDRIVLGIETLKGVSEGVAEALSIETNLE 851

Query: 860 KPFDSLEDFCSRVDSKK------LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            PF S++D   R+  K+      LN+R + +L   G  D     R  +L  +++  K   
Sbjct: 852 GPFKSMQDVYDRLVVKREDRPPILNKRSMVALTAVGFFDPIYKDRKAVLSWIESKYKEPG 911

Query: 914 WV------EKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +      ++ RT K   IF    EK     +   E  S +  +V  E ++
Sbjct: 912 SIPCLEPPKRKRTKKQAEIFTSQEEKKVVQQERIAETTSPKKKNVTIETDK 962


>gi|332076180|gb|EGI86646.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae
           GA41301]
          Length = 1033

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 308/969 (31%), Positives = 497/969 (51%), Gaps = 121/969 (12%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLG 63

Query: 73  CQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQS 128
            ++ +   D + NL+                 L  ++ GYQ+L++L  ++M    QG+++
Sbjct: 64  LEMTVFVDDQEVNLR----------------FLALSSVGYQQLMKLSTAKM----QGEKT 103

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +   +L++I     +++            +F+  +  E          G   Y+ +  
Sbjct: 104 WSVLSQYLEDIA----VIVP-----------YFDRVESLE---------LGCDYYIGV-- 137

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 Y E+   +  +   LPL   N        D E   VL A+  +  +  ++ P  
Sbjct: 138 ------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLR 185

Query: 249 TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           +      + S +  +F +  P+AL+N  ++    S+ L +    LPRF      +  +  
Sbjct: 186 SRQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDISLK-LPRF------NPARPA 238

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             ELR +A  GL        + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ 
Sbjct: 239 VEELRERAELGL--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFG 290

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R
Sbjct: 291 RSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYR 350

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DP 483
            + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I        
Sbjct: 351 PDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +
Sbjct: 411 AYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYI 463

Query: 544 PM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
           P+ Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I
Sbjct: 464 PLKYGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEI 520

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +
Sbjct: 521 DLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNF 580

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK 
Sbjct: 581 VARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKD 640

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KT
Sbjct: 641 VSAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKT 700

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           HYP  F    + L   N +    +  DA +   ++ P S+NT     K+ +  IY  L +
Sbjct: 701 HYPAIFY--QIMLNSANSD----YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKS 754

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++
Sbjct: 755 IKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKV 811

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVL 959
             +L N+ +                F  E G+ F D I + ++        +F  EQ +L
Sbjct: 812 FNNLANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELL 855

Query: 960 GFYFSGHPL 968
           G   S HPL
Sbjct: 856 GIGVSKHPL 864


>gi|197294579|ref|YP_001799120.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
           australiense]
 gi|171853906|emb|CAM11869.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
           australiense]
          Length = 918

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 290/942 (30%), Positives = 495/942 (52%), Gaps = 75/942 (7%)

Query: 16  VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75
           + S YSLL+  L L  ++ K   +    +A++D  NL+    F Q      I+PI+G ++
Sbjct: 7   LQSYYSLLDSLLPLEKLVLKAKENDYEFVALSDDYNLYGMPTFLQLCQKHDIKPILGLKI 66

Query: 76  DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
                 N    NQ          +++     +G + LI+L +      + +    + L  
Sbjct: 67  ------NFLWKNQ-------TGELLVYAKNDQGIKNLIQLATA----SKKEAQSHLHLEQ 109

Query: 136 LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY 195
           ++ +G +  I++ G    P     F N  +   + +L   K     +++ +     +   
Sbjct: 110 IEALGKDLFIIICGLC--PFWEKIFVNDQKNEFQEVLEKLKTIFSEIFLGISFQSFFLEK 167

Query: 196 RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
               ++  +   E+P +  N + +   +  E + +L  + + T+ S+ D   +T      
Sbjct: 168 LSDNLIDFSTHFEIPCLPVNKTNYDDAKAQETYQILAKMKNKTIYSEIDLSFLT------ 221

Query: 256 NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQKEEENELRNK 314
            +SE    +   P+ +++  ++  + ++      P+   F +    D I+K+E++  +  
Sbjct: 222 -KSEFDIRYQKYPQIMDSLKQLIPKINY----QTPLKKNFSLPSYLDFIEKKEKDLPKEV 276

Query: 315 AVAGLEVRLAQGAIAKGY------------------HAQDYRQRLDFELNVIARMKFSGY 356
                E +L Q   AK Y                    + Y QR++ EL +I  + +  Y
Sbjct: 277 VFEKPEKKLFQNLDAKKYLKKIVYQGLEKFLNPSKSKYEKYSQRINEELKIINDLNYENY 336

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
           FLIV+D +++AKKNNI VGPGRGS +GS+  + L IT+IDPL+++L+FERFLNP R +MP
Sbjct: 337 FLIVSDLVKYAKKNNILVGPGRGSSSGSLVCFCLEITEIDPLKYNLIFERFLNPQRKTMP 396

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ----MPYSQV 472
           D D+DF  ++R+ VI+Y++ KYG   VA IITFGS   K A+  +   L+    MP+ Q 
Sbjct: 397 DIDLDFPDNKREIVIQYIRQKYGLHHVANIITFGSFAKKNAI--IKELLKFKKLMPF-QE 453

Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            +L   + N   +      I DD         D  +  LL+I+  LEGL R   TH AGI
Sbjct: 454 KQLFHFLENQKPN-----QITDD--------LDDQIKNLLQIASFLEGLPRFTGTHPAGI 500

Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
           ++    L Q +P+ +    +L  TQ+  K +E  GL+K D LGL +LT++++ +  + + 
Sbjct: 501 ILSKDNLLQNIPLQKSNHLNLLQTQWEAKELETMGLLKIDLLGLHSLTIIEQIIAAIKES 560

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +L  IP +D +TY LL+   TLG+FQLES   ++ L  M P+  ED++AL++L RP
Sbjct: 561 QKDFNLFSIPLNDPKTYQLLSNAKTLGVFQLESGNAKKILTRMAPNNFEDLVALLALNRP 620

Query: 653 GPIDNIVVY-NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           GPID+  ++  NR     + +    LID +LK T GVI+YQEQ+MQIA L + YSL+EAD
Sbjct: 621 GPIDSFDLFLKNRNQFNSQKIYFDSLIDHILKPTHGVILYQEQIMQIASLFAKYSLAEAD 680

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           + RRA+ KK K  + K+K+ F+    K G S +++  I++ + KFA+YGFNKSH+ AY++
Sbjct: 681 LFRRAISKKDKTVLLKEKKYFLEKTQKEGHSLSLSNQIYDYILKFANYGFNKSHSVAYSL 740

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
           ISY+ A++KTHY +EF+   +   +++  + K   ++A Q  I ++ P++      +   
Sbjct: 741 ISYRMAYLKTHYFIEFMTILLNDSLNDPLQTKALLKEAFQAGITLVKPNIFVSSDQYYFK 800

Query: 832 DNRIYYSLAAIKGVGTTTARHIMEASADKPFD-SLEDFCSRVDSKKLNRRVLESLVFAGA 890
           +N+++  L+ IKGV +   + +++    K F  S ++F  R+    LN  +L +L+  GA
Sbjct: 801 NNQLFLPLSLIKGVNSNFCKELIQERHKKNFTLSFKEFKQRLFF-CLNETILTNLILGGA 859

Query: 891 LDCFGYSRMQLL--QSLDNIQKYAQWVEKNRTNKHENIFAHE 930
           LD  G +R  L   Q+L+ + KY +++   R  ++E   +HE
Sbjct: 860 LDQMGLNRKTLFHNQALNEV-KYYRFLPNYRIVEYEEFLSHE 900


>gi|15900778|ref|NP_345382.1| DNA polymerase III DnaE [Streptococcus pneumoniae TIGR4]
 gi|14972370|gb|AAK75022.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae TIGR4]
          Length = 1042

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 310/973 (31%), Positives = 499/973 (51%), Gaps = 115/973 (11%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           EK      L   + YS +E  +S+   +          +A+ D +NL+ A +F +     
Sbjct: 6   EKCKLIAQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKY 65

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQ 124
           GI P++G ++ + + D      QG        ++  L  ++ GYQ+L++L  ++M    Q
Sbjct: 66  GIHPLLGLEMTVFVDD------QG-------VNLRFLALSSVGYQQLMKLSTAKM----Q 108

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
           G+++  +   +L++I     +++            +F+  +  E          G   Y+
Sbjct: 109 GEKTWSVLSQYLEDIA----VIVP-----------YFDRVESLE---------LGCDYYI 144

Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +        Y E+   +  +   LPL   N        D E   VL A+  +  +  ++
Sbjct: 145 GV--------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLRE 190

Query: 245 RPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            P  +      + S +  +F +  P+AL+N  ++    S+ L      LPRF      + 
Sbjct: 191 VPLRSRQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLK-LPRF------NP 243

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +    ELR +A  GL        + KG  +++Y+ RLD EL+VI  M F  YFL+V D 
Sbjct: 244 ARPAVEELRERAELGL--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDL 295

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           +++ + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID  
Sbjct: 296 LRFGQSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIP 355

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-- 481
              R + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I    
Sbjct: 356 DIYRPDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRD 415

Query: 482 --DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
               A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L
Sbjct: 416 NLKSAYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDL 468

Query: 540 SQLVPM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
           +  +P+ Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + 
Sbjct: 469 TNYIPLKYGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLK 525

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           +  I  +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D 
Sbjct: 526 IEEIDLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDY 585

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           I  +  RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ L+G+SL +AD+LRRAM
Sbjct: 586 INNFVARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRLAGFSLGKADILRRAM 645

Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
           GKK    M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A
Sbjct: 646 GKKDASAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLA 705

Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
           + KTHYP  F    + L   N +    +  DA +   ++   S+NT     K+ +  IY 
Sbjct: 706 YFKTHYPAIFY--QVMLNSSNSD----YLIDALEAGFEVASLSINTIPYHDKIANKAIYL 759

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L +IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +
Sbjct: 760 GLKSIKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKN 816

Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENE 955
           R ++  +L N+ +                F  E G+ F D I + ++        +F  E
Sbjct: 817 RQKVFNNLANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKFYME 860

Query: 956 QRVLGFYFSGHPL 968
           Q +LG   S HPL
Sbjct: 861 QELLGIGVSKHPL 873


>gi|237649493|ref|ZP_04523745.1| DNA polymerase III DnaE [Streptococcus pneumoniae CCRI 1974]
          Length = 1033

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 309/969 (31%), Positives = 495/969 (51%), Gaps = 121/969 (12%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLG 63

Query: 73  CQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQS 128
            ++ +   D + NL+                 L  ++ GYQ+L++L  ++M    QG+++
Sbjct: 64  LEMTVFVDDQEVNLR----------------FLALSSVGYQQLMKLSTAKM----QGEKT 103

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +   +L++I     +++            +F+  +  E          G   Y+ +  
Sbjct: 104 WSVLSQYLEDIA----VIVP-----------YFDRVESLE---------LGCDYYIGV-- 137

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 Y E+   +  +   LPL   N        D E   VL A+  +  +  ++ P  
Sbjct: 138 ------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLR 185

Query: 249 TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           +      + S +  +F +  P+AL+N  ++    S+ L +    LPRF            
Sbjct: 186 SRQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDISLK-LPRF------------ 232

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            N  R  AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ 
Sbjct: 233 -NPAR-PAVEELRERAELGIVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFG 290

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R
Sbjct: 291 RSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYR 350

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DP 483
            + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I        
Sbjct: 351 PDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +
Sbjct: 411 AYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYI 463

Query: 544 PM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
           P+ Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I
Sbjct: 464 PLKYGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEI 520

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +
Sbjct: 521 DLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNF 580

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK 
Sbjct: 581 VARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKD 640

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KT
Sbjct: 641 VSAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKT 700

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           HYP  F    + L   N +    +  DA +   ++ P S+NT     K+ +  IY  L +
Sbjct: 701 HYPAIFY--QIMLNSANSD----YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKS 754

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++
Sbjct: 755 IKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKV 811

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVL 959
             +L N+ +                F  E G+ F D I + ++        +F  EQ +L
Sbjct: 812 FNNLANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELL 855

Query: 960 GFYFSGHPL 968
           G   S HPL
Sbjct: 856 GIGVSKHPL 864


>gi|307709383|ref|ZP_07645841.1| DNA polymerase III subunit alpha [Streptococcus mitis SK564]
 gi|307619966|gb|EFN99084.1| DNA polymerase III subunit alpha [Streptococcus mitis SK564]
          Length = 1033

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 312/973 (32%), Positives = 495/973 (50%), Gaps = 129/973 (13%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIEKYVRVAKEYGYTHLAMMDIDNLYGAFDFLEVTKKYGIHPLLG 63

Query: 73  CQLDI--DMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQS 128
            ++++  D Q+ NL+                 L  ++ GYQ+L++L  ++M    QG++S
Sbjct: 64  LEMNVLVDAQEVNLR----------------FLALSSVGYQQLMKLSTAKM----QGEKS 103

Query: 129 VRICLSWLQEIGT-----EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             +   +L++I       +GL +L  G                                Y
Sbjct: 104 WSVLSQYLEDIAVIVPYFDGLELLNLGCD-----------------------------YY 134

Query: 184 VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
           + +        Y E+   +  +   LPL   N        D E   VL A+  +  +S +
Sbjct: 135 IGV--------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LSLR 180

Query: 244 DRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           + P  +      + S +  +F +  P+AL+N  ++    S+ L      LPRF      +
Sbjct: 181 EVPLRSRQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLK-LPRF------N 233

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             +    ELR +A    E+ LAQ    KG  +++Y+ RLD EL VI  M F  YFL+V D
Sbjct: 234 PARPAVEELRERA----ELGLAQ----KGLTSKEYQDRLDQELAVIHDMGFDDYFLVVWD 285

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +++ + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID 
Sbjct: 286 LLRFGRSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDI 345

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN- 481
               R + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I   
Sbjct: 346 PDIYRPDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFR 405

Query: 482 ---DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ 
Sbjct: 406 DNLKSAYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQD 458

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
           L+  +P+      ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + 
Sbjct: 459 LTNYIPLKHG--DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAKTEGIHLK 516

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           +  I  +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D 
Sbjct: 517 VEEIDLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDY 576

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           I  +  RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAM
Sbjct: 577 INNFVARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAM 636

Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
           GKK    M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A
Sbjct: 637 GKKDASAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLA 696

Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
           + KTHYP  F    + L   N +    +  DA +   ++ P S+NT     K+ +  IY 
Sbjct: 697 YFKTHYPAIFY--QVMLNSANSD----YLTDALEAGFEVAPLSINTIPYHDKIANKSIYL 750

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L +IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +
Sbjct: 751 GLKSIKGVSNDLALWIIE---NRPYSNIEDFIAKLPENFLKLPLLEPLVKVGLFDSFEKN 807

Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENE 955
           R ++  +L N+ +                F  E G+ F D I + ++        +F  E
Sbjct: 808 RQKVFNNLVNLFE----------------FVKELGSLFGDTIYSWQESEDWTEQEKFYME 851

Query: 956 QRVLGFYFSGHPL 968
           Q +LG   S HPL
Sbjct: 852 QELLGIGVSKHPL 864


>gi|149007158|ref|ZP_01830822.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP18-BS74]
 gi|307127553|ref|YP_003879584.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae 670-6B]
 gi|147761196|gb|EDK68163.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP18-BS74]
 gi|306484615|gb|ADM91484.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae 670-6B]
 gi|332075509|gb|EGI85977.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae
           GA17545]
          Length = 1033

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 308/966 (31%), Positives = 496/966 (51%), Gaps = 115/966 (11%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLG 63

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQSVRI 131
            ++ + + D      QG        ++  L  ++ GYQ+L++L  ++M    QG+++  +
Sbjct: 64  LEMTVFVDD------QG-------VNLRFLALSSVGYQQLMKLSTAKM----QGEKTWSV 106

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              +L++I     +++            +F+  +  E          G   Y+ +     
Sbjct: 107 LSQYLEDIA----VIVP-----------YFDRVESLE---------LGCDYYIGV----- 137

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
              Y E+   +  +   LPL   N        D E   VL A+  +  +  ++ P  +  
Sbjct: 138 ---YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLRSRQ 188

Query: 252 HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               + S +  +F +  P+AL+N  ++    S+ L      LPRF      +  +    E
Sbjct: 189 DVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLK-LPRF------NPARPAVEE 241

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           LR +A  GL        + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 242 LRERAELGL--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294 GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DPAHP 486
           IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I        A+ 
Sbjct: 354 IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKSAYE 413

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM- 545
            +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+ 
Sbjct: 414 GNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLK 466

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
           Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +
Sbjct: 467 YGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLE 523

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  R
Sbjct: 524 DKETLDLFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVAR 583

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           K+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    
Sbjct: 584 KHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASA 643

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP
Sbjct: 644 MHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYP 703

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             F    + L   N +    +  DA +   ++ P S+NT     K+ +  IY  L +IKG
Sbjct: 704 AIFY--QIMLNSANSD----YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKG 757

Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
           V    A  I+E    +P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +
Sbjct: 758 VSNDLALWIIE---HRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNN 814

Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVLGFY 962
           L N+ +                F  E G+ F D I + ++        +F  EQ +LG  
Sbjct: 815 LANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELLGIG 858

Query: 963 FSGHPL 968
            S HPL
Sbjct: 859 VSKHPL 864


>gi|303254600|ref|ZP_07340703.1| DNA polymerase III DnaE [Streptococcus pneumoniae BS455]
 gi|303259799|ref|ZP_07345774.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP-BS293]
 gi|303264635|ref|ZP_07350553.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae BS397]
 gi|303267465|ref|ZP_07353317.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae BS457]
 gi|301801743|emb|CBW34452.1| DNA polymerase III alpha subunit [Streptococcus pneumoniae INV200]
 gi|302598452|gb|EFL65495.1| DNA polymerase III DnaE [Streptococcus pneumoniae BS455]
 gi|302639004|gb|EFL69464.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP-BS293]
 gi|302642998|gb|EFL73293.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae BS457]
 gi|302645722|gb|EFL75951.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae BS397]
          Length = 1033

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 309/969 (31%), Positives = 498/969 (51%), Gaps = 121/969 (12%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLG 63

Query: 73  CQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQS 128
            ++ +   D + NL+        F ++ S+        GYQ+L++L  ++M    QG+++
Sbjct: 64  LEMTVFVDDQEVNLR--------FLSLSSV--------GYQQLMKLSTAKM----QGEKT 103

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +   +L++I     +++            +F+  +  E          G   Y+ +  
Sbjct: 104 WSVLSQYLEDIA----VIVP-----------YFDRVESLE---------LGCDYYIGV-- 137

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 Y E+   +  +   LPL   N        D E   VL A+  +  +  ++ P  
Sbjct: 138 ------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLR 185

Query: 249 TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           +      + S +  +F +  P+AL+N  ++    S+ L      LPRF      +  +  
Sbjct: 186 SRQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLK-LPRF------NPARPA 238

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             ELR +A  GL        + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ 
Sbjct: 239 VEELRERAELGL--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFG 290

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R
Sbjct: 291 RSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYR 350

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DP 483
            + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I        
Sbjct: 351 PDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +
Sbjct: 411 AYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYI 463

Query: 544 PM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
           P+ Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I
Sbjct: 464 PLKYGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEI 520

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +
Sbjct: 521 DLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNF 580

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK 
Sbjct: 581 VARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKD 640

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KT
Sbjct: 641 ASAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKT 700

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           HYP  F    + L   N +    +  DA +   ++ P S+NT     K+ +  IY  L +
Sbjct: 701 HYPAIFY--QIMLNSANSD----YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKS 754

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++
Sbjct: 755 IKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKV 811

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVL 959
             +L N+ +                F  E G+ F D I + ++        +F  EQ +L
Sbjct: 812 FNNLANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELL 855

Query: 960 GFYFSGHPL 968
           G   S HPL
Sbjct: 856 GIGVSKHPL 864


>gi|185178880|ref|ZP_02964653.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 5
            str. ATCC 27817]
 gi|188518258|ref|ZP_03003786.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 11
            str. ATCC 33695]
 gi|195867837|ref|ZP_03079837.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 9
            str. ATCC 33175]
 gi|198273830|ref|ZP_03206364.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 4
            str. ATCC 27816]
 gi|225550623|ref|ZP_03771572.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 2
            str. ATCC 27814]
 gi|225551185|ref|ZP_03772131.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 8
            str. ATCC 27618]
 gi|184209132|gb|EDU06175.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 5
            str. ATCC 27817]
 gi|188998262|gb|EDU67359.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 11
            str. ATCC 33695]
 gi|195660534|gb|EDX53791.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 9
            str. ATCC 33175]
 gi|198249585|gb|EDY74367.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 4
            str. ATCC 27816]
 gi|225379000|gb|EEH01365.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 8
            str. ATCC 27618]
 gi|225379777|gb|EEH02139.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 2
            str. ATCC 27814]
          Length = 969

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 275/777 (35%), Positives = 429/777 (55%), Gaps = 43/777 (5%)

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            +Y  N  E  S+FS +  AL+N  ++       LQV    LP  I     +        L
Sbjct: 176  NYFLNDHEAQSLFSTI--ALDNLNKVLNE----LQVEIHDLPINIPVYDKNNLTVSSEIL 229

Query: 312  RNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            +   ++GL+ RL    G + K Y      QRL +EL+VI+  +F  YFLIV DFI +AK 
Sbjct: 230  KQLCISGLKQRLNAHDGQVKKAY-----AQRLKYELDVISEKQFDDYFLIVYDFINYAKS 284

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D   ++RD+
Sbjct: 285  NGIIVGPGRGSAAGSLVAYCLYITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKRDQ 344

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI Y+  KYG++ VA I+TF  L+AK ALRDVGR L +    +D++CK I  D    + L
Sbjct: 345  VIEYLFEKYGNDHVAYIVTFQRLKAKMALRDVGRILGIDLKVIDKICKNIKTDYDEDIDL 404

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             AI   +  +E  +       L EIS+KL    R   THAAGI++ +  ++ ++P+   +
Sbjct: 405  -AIKKSATLKEMYVLHK---ELFEISKKLIHAPRQIGTHAAGIILSNSSITNIIPIQLGI 460

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
             +D P++Q++M+++E+ GLIK D LGLK LT++   L  + + +  K+DL  I ++D   
Sbjct: 461  -NDRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIYKTQNKKIDLFNIDYNDKFV 519

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            +  L    T GIFQLES GM++ L  ++P  IEDI  + +L+RPGP  NI  +  R+  +
Sbjct: 520  FQDLAKAKTNGIFQLESPGMKKVLLKVKPQNIEDISIVSALFRPGPQQNIKTFVERRFKR 579

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E+    +     +L+ T G+IIYQEQV+++ + ++ + ++ +D  RRA+ KK ++ + + 
Sbjct: 580  EEFSYWNEQTKKILEPTYGIIIYQEQVIELVKTIANFDIATSDNFRRAISKKDEKILMQL 639

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K+ FI+GA  N   + +   IFE +  FA YGFN SH+ AY+ ISY  A++K +YP+EFL
Sbjct: 640  KDDFINGALANNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYPLEFL 699

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVG 846
            +  ++    + EK+  +  +A+ FNI I  P +     DF + +++  I +    IKG G
Sbjct: 700  SVLLSHTSASKEKLLSYLDEAKDFNISIKGPDIQHFSNDFVIDNHKQIIRFGFKTIKGFG 759

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKK---LNRRVLESLVFAGALDCFGYSRMQLLQ 903
                + I  A  +     L D+ S +D+ K   ++ + +E L+  GA D F  +R+ LL 
Sbjct: 760  DELLKKIKLALENA---ELSDYISYIDALKKGNISLKNIEILIRIGAFDSFEINRLFLLN 816

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL-EKFSVENSSVRFENEQRVLGFY 962
            +L+ I       EK   N H          +++ +++ E+F         E+E + LG  
Sbjct: 817  NLEEI------FEKTGLNGHFFDLNLVGLDYANDMSINERFQ--------EDEIQYLGIN 862

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWV 1018
             S      Y   +    +K   ES   I  N  + + A V++  Q KT+KG+ I ++
Sbjct: 863  LSSLNYTNYTNEIDYSNLKYEIESFNEINTNYEVNIVAQVLNIVQSKTKKGNDIFYL 919



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 43/66 (65%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F++L VHS YSLL  ALS+++++     + QP + +TD NN++  +EF  KA A  + PI
Sbjct: 2  FINLNVHSYYSLLNSALSIDDLIQHALDNNQPYVCLTDLNNMYGCIEFYDKAKAHNLIPI 61

Query: 71 IGCQLD 76
          IG + +
Sbjct: 62 IGLEFE 67


>gi|225858693|ref|YP_002740203.1| DNA polymerase III DnaE [Streptococcus pneumoniae 70585]
 gi|225721617|gb|ACO17471.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae 70585]
          Length = 1033

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 319/1035 (30%), Positives = 519/1035 (50%), Gaps = 129/1035 (12%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4    QLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLG 63

Query: 73   CQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQS 128
             ++ +   D + NL+                 L  ++ GYQ+L++L  ++M    QG+++
Sbjct: 64   LEMTVFVDDQEVNLR----------------FLALSSVGYQQLMKLSTAKM----QGEKT 103

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   +L++I     +++            +F+  +  E          G   Y+ +  
Sbjct: 104  WSVLSQYLEDIA----VIVP-----------YFDRVESLE---------LGCDYYIGV-- 137

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                  Y E+   +  +   LPL   N        D E   VL A+  +  +  ++ P  
Sbjct: 138  ------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLR 185

Query: 249  TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +      + S +  +F +  P+AL+N  ++    S+ L      LPRF      +  +  
Sbjct: 186  SRQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLK-LPRF------NPARPA 238

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              ELR +A  GL        + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ 
Sbjct: 239  VEELRERAELGL--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFG 290

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R
Sbjct: 291  RSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYR 350

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DP 483
             + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I        
Sbjct: 351  PDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKS 410

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +
Sbjct: 411  AYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYI 463

Query: 544  PM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            P+ Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I
Sbjct: 464  PLKYGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEI 520

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
              +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +
Sbjct: 521  DLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNF 580

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ L+G+SL +AD+LRRAMGKK 
Sbjct: 581  VARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRLAGFSLGKADILRRAMGKKD 640

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KT
Sbjct: 641  ASAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKT 700

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP  F    + L   N +    +  DA +   ++ P S+NT     K+ +  IY  L +
Sbjct: 701  HYPAIFY--QIMLNSANSD----YVTDALEAGFEVAPLSINTIPYHDKIANKSIYIGLKS 754

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKG+    A  I+E    +P+ ++EDF +++    L   +LE LV  G  D F  +R ++
Sbjct: 755  IKGLSKDLALWIIE---HRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDLFEKNRQKV 811

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVL 959
              +L N+ +                F  E G+ F D I + ++        +F  EQ +L
Sbjct: 812  FNNLANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELL 855

Query: 960  GFYFSGHPLDVY--KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            G   S HPL     K I     I    E+   I    +R   ++      +T+KG  + +
Sbjct: 856  GIGVSKHPLQAIASKAIYPITPIGNLSENSYAIILVEVRKIKVI------RTKKGENMAF 909

Query: 1018 VTFSEPAKEYEANFF 1032
            +   +  K+ +   F
Sbjct: 910  LQADDSKKKLDVTLF 924


>gi|168482961|ref|ZP_02707913.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           CDC1873-00]
 gi|172043523|gb|EDT51569.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           CDC1873-00]
          Length = 1033

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 308/969 (31%), Positives = 496/969 (51%), Gaps = 121/969 (12%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLG 63

Query: 73  CQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQS 128
            ++ +   D + NL+                 L  ++ GYQ+L++L  ++M    QG+++
Sbjct: 64  LEMTVFVDDQEVNLR----------------FLALSSVGYQQLMKLSTAKM----QGEKT 103

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +   +L++I     ++++           +F+  +  E          G   Y+ +  
Sbjct: 104 WSVLSQYLEDIA----VIVS-----------YFDRVESLE---------LGCDYYIGV-- 137

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 Y E+   +  +   LPL   N        D E   VL A+  +  +  ++ P  
Sbjct: 138 ------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLR 185

Query: 249 TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           +      + S +  +F +  P+AL+N  ++    S+ L      LPRF      +  +  
Sbjct: 186 SRQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLK-LPRF------NPARPA 238

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             ELR +A  GL        + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ 
Sbjct: 239 VEELRERAELGL--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFG 290

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R
Sbjct: 291 RSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYR 350

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DP 483
            + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I        
Sbjct: 351 PDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +
Sbjct: 411 AYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYI 463

Query: 544 PM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
           P+ Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I
Sbjct: 464 PLKYGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEI 520

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +
Sbjct: 521 DLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNF 580

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK 
Sbjct: 581 VARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKD 640

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KT
Sbjct: 641 ASAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKT 700

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           HYP  F    + L   N +    +  DA +   ++   S+NT     K+ +  IY  L +
Sbjct: 701 HYPAIFY--QVMLNSSNSD----YLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKS 754

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++
Sbjct: 755 IKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKV 811

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVL 959
             +L N+ +                F  E G+ F D I + +K        +F  EQ +L
Sbjct: 812 FNNLANLFE----------------FVKELGSLFGDAIYSWQKSEDWTEQEKFYMEQELL 855

Query: 960 GFYFSGHPL 968
           G   S HPL
Sbjct: 856 GIGVSKHPL 864


>gi|148284147|ref|YP_001248237.1| DNA polymerase III alpha chain [Orientia tsutsugamushi str. Boryong]
 gi|146739586|emb|CAM79338.1| DNA polymerase III alpha chain [Orientia tsutsugamushi str. Boryong]
          Length = 1234

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/541 (42%), Positives = 351/541 (64%), Gaps = 21/541 (3%)

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
            R+A++ D     +++ + +LEGL+RH S HAAGIVIG + L   + +Y+D  SD+PV Q+
Sbjct: 591  RKAQIQD-----VIKTALELEGLHRHVSVHAAGIVIGRQNLIDTIALYKDKNSDIPVVQY 645

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
            +MK++E AGLIKFDFLGL+TLT++ K L+ L  + +  +++ + F+D  TY LL+   T+
Sbjct: 646  SMKYLEAAGLIKFDFLGLQTLTIISKCLELLKNKNINFEINNLEFNDKLTYQLLSNGNTI 705

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G+FQ ESSGM+ AL+ ++PDCIED+IAL +LYRPGP+DN+  Y + K+G+ K   +H  +
Sbjct: 706  GVFQFESSGMQDALKRLKPDCIEDLIALGALYRPGPMDNLRTYIDCKHGRLKPNYLHSKL 765

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +P+LKET G IIYQEQVM+IA++L+ Y+LS+AD LR+AM KKIK EM+ QK  FI+GA +
Sbjct: 766  EPILKETYGTIIYQEQVMEIAKVLAKYTLSKADFLRQAMAKKIKSEMENQKVIFINGAIE 825

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NGISK  A +IF  + KFA YGFNKSHAA YAVISYQTA++K +YP EFL A + L++++
Sbjct: 826  NGISKNQAESIFAEVEKFAGYGFNKSHAAIYAVISYQTAYLKANYPTEFLVACLNLDIND 885

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS 857
             +KI  F Q+A+Q  I+++PP++N     F +  DN I ++L AIK V     + I+E  
Sbjct: 886  QDKIDLFIQEAKQLGIKVIPPNINKSKEYFSISADNAIIFALGAIKNVTPNIGKIIVEER 945

Query: 858  ADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG--YSRMQLLQSLDNIQKYAQW 914
              +  F ++ DF  R DS  ++R+V ESL++AG  D F    +R QL  S+D I  YA  
Sbjct: 946  LHRGEFKTILDFAVRTDSYSISRKVFESLIYAGCFDDFQQPVNRHQLFASIDRINNYA-- 1003

Query: 915  VEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
              K+  N H+  F+    T  D ++ + ++S+   +++   E  VLG + + +P+  Y+ 
Sbjct: 1004 -SKHAKNIHQ--FSFITSTVEDVLSPISEYSLHEKAMK---EFEVLGSFLTCNPISPYES 1057

Query: 974  ILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +L K G+   +    T++  +  +R+A +V  K  + + +G +   +  S+     E   
Sbjct: 1058 LLAKHGVVNSKYLSTTLKSGSTAVRIAGIVQKKNSRMSPRG-KFNIIKLSDSCGNSEVKI 1116

Query: 1032 F 1032
            F
Sbjct: 1117 F 1117



 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/496 (43%), Positives = 295/496 (59%), Gaps = 29/496 (5%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +  F+HL+V SSYSLLE  LS   IL     D+ PA+A+TD +NLF +LEF+  A   GI
Sbjct: 2   NAKFIHLRVQSSYSLLESTLSTQKILSLAQRDEMPAVALTDKSNLFGSLEFALAAAKEGI 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           QPI G  L+I           G+   P    I+L+     GYQ L++L S  Y+ +    
Sbjct: 62  QPIHGIILNIQYY--------GQNDSPKYSEILLIAQNKAGYQNLLKLASFPYIKNDRTT 113

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              + L  L     EG+I+L+G   G I    F  +  +AE     FK +FG+R Y  + 
Sbjct: 114 INHVTLDDLFTYN-EGIIVLSGYFYGIIGNLLFEKNFVLAENYAKKFKTIFGNRFYFEIN 172

Query: 188 RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
           R      Y  E   VQLA    +PLVATNN LF   E Y  H+VLM + +  +  + D+ 
Sbjct: 173 RITSKQIYAIEKSYVQLAQKLNIPLVATNNILFDEGEKYATHEVLMKICNPNI--EIDKF 230

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
           ++    Y K+++EM+  F DLP+A+ENTV + +R SF+L+   P+LP+F  K+ D     
Sbjct: 231 KINNQCYFKSQNEMIETFWDLPQAIENTVYLTQRISFMLEAKKPLLPKF-AKDAD----- 284

Query: 307 EENEL-RNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARMKFSGYFL 358
           EEN+L R  +  GL  +L      K Y   +       Y  RL++EL++I  M FSGYFL
Sbjct: 285 EENKLIRQLSEEGLSQKLKLQF--KNYSTAEFEDKKKIYFDRLNYELSIICSMNFSGYFL 342

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           IV+DFI+W+K+NNI V P RGSGA SV A+ L IT++DP+RF LLFERFLNP+R+SMPDF
Sbjct: 343 IVSDFIKWSKENNISVNP-RGSGAASVVAWGLGITNLDPIRFGLLFERFLNPERVSMPDF 401

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           DIDFCQ+RR EVI YV+ KYG  +V QIITFG LQAKA ++DV RAL + Y+  + +  L
Sbjct: 402 DIDFCQERRGEVINYVRRKYGEGKVGQIITFGKLQAKAVVKDVARALGLGYNYANYITSL 461

Query: 479 IPNDPAHPVSLQAIAD 494
           IP +   PV+LQ   D
Sbjct: 462 IPFNAVRPVTLQEAID 477


>gi|300932138|ref|ZP_07147423.1| DNA polymerase III, alpha subunit [Escherichia coli MS 187-1]
 gi|300460114|gb|EFK23607.1| DNA polymerase III, alpha subunit [Escherichia coli MS 187-1]
          Length = 566

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/576 (40%), Positives = 347/576 (60%), Gaps = 22/576 (3%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
           +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59  DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNA 110

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            GLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 111 -GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR 559


>gi|237820831|ref|ZP_04596676.1| DNA polymerase III DnaE [Streptococcus pneumoniae CCRI 1974M2]
          Length = 950

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 309/969 (31%), Positives = 492/969 (50%), Gaps = 121/969 (12%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLG 63

Query: 73  CQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQS 128
            ++ +   D + NL+                 L  ++ GYQ+L++L  ++M    QG+++
Sbjct: 64  LEMTVFVDDQEVNLR----------------FLALSSVGYQQLMKLSTAKM----QGEKT 103

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +   +L++I                    +F+  +  E          G   Y+ +  
Sbjct: 104 WSVLSQYLEDIAV---------------IVPYFDRVESLE---------LGCDYYIGV-- 137

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 Y E+   +  +   LPL   N        D E   VL A+  +  +  ++ P  
Sbjct: 138 ------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLR 185

Query: 249 TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           +      + S +  +F +  P+AL+N  ++    S+ L +    LPRF            
Sbjct: 186 SRQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDISLK-LPRF------------ 232

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            N  R  AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ 
Sbjct: 233 -NPAR-PAVEELRERAELGIVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFG 290

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R
Sbjct: 291 RSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYR 350

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DP 483
            + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I        
Sbjct: 351 PDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +
Sbjct: 411 AYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYI 463

Query: 544 PM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
           P+ Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I
Sbjct: 464 PLKYGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEI 520

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +
Sbjct: 521 DLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNF 580

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK 
Sbjct: 581 VARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKD 640

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KT
Sbjct: 641 VSAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKT 700

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           HYP  F    + L   N +    +  DA +   ++ P S+NT     K+ +  IY  L +
Sbjct: 701 HYPAIFY--QIMLNSANSD----YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKS 754

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++
Sbjct: 755 IKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKV 811

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVL 959
             +L N+ +                F  E G+ F D I + ++        +F  EQ +L
Sbjct: 812 FNNLANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELL 855

Query: 960 GFYFSGHPL 968
           G   S HPL
Sbjct: 856 GIGVSKHPL 864


>gi|315111549|ref|YP_812810.2| DNA polymerase III, alpha subunit [Lactobacillus delbrueckii subsp.
            bulgaricus ATCC BAA-365]
          Length = 1164

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 306/1021 (29%), Positives = 496/1021 (48%), Gaps = 68/1021 (6%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  S+ ++L   +   +++         A+A+TD N  F   +F Q+A  AGI+P++G 
Sbjct: 6    LQTISANTILASPMKTADLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLG- 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                 +Q   K     +  +     +V L  + +GY+ L+ L S + +           L
Sbjct: 65   -----LQGRFKGIELEEAEY----DLVFLAQSQKGYKSLMRLSSFLNIASGDLAGPAPSL 115

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL---QRHR 190
            + L E+    +I+  G +S         NS +   K+L  F    G  LY+ +   +   
Sbjct: 116  ADLPELSDLTVIVPAGLTSELRQLNKLRNSGEEYVKKLQAFLPK-GLPLYLGVYPAESAA 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             YD Y    V +LA    LP+    +  +L   D     VL A+    V+ + +   +  
Sbjct: 175  AYDAY----VKKLAEISSLPITVVEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAE 230

Query: 251  ---DHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                H+L+    +     +  L EAL N+ +IA  C   +    P LP F +        
Sbjct: 231  GQGSHWLRPAPVLEDACREMGLEEALANSGKIAASCQAKIPFEEPQLPVFPQATG----L 286

Query: 306  EEENELRNKAVAGLE-VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              +  L   A AGLE + L QG     YHA     RL  EL VI +M F+ YFLIV D +
Sbjct: 287  SSDQYLEKLAFAGLEKLGLRQGI----YHA-----RLQKELAVIQQMGFADYFLIVGDIV 337

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             + ++    VGPGRGS AGS+ AYAL IT IDPL++ LLFERFLNP R  MPD D+DF  
Sbjct: 338  NYCRQKGALVGPGRGSAAGSLVAYALGITQIDPLKYDLLFERFLNPARADMPDIDLDFTT 397

Query: 425  DRRDEVIRYVQNKYG--------HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
              R     YVQ KYG         + VA+I+   +++AK+ L   G+   +    + RL 
Sbjct: 398  SGRKLAFAYVQEKYGAKARFGEGSDLVARILALTTMKAKSVLERTGQVFGLTLPAIARLK 457

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            + +        +L      + F+    A P    L + + +LEGL     THA G+VI +
Sbjct: 458  QAM----GAAKTLAEAGQQAEFKALVAASPLTRLLYQTAARLEGLPEDTGTHAPGLVISE 513

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
             PLS+ + +     + L   +   K++EK GL+K DFL L  L LL+  L  + +    +
Sbjct: 514  EPLSRQIGLMTGKEAPLWTVEQTKKYVEKYGLLKIDFLTLDNLELLEGVLAEIQKSSGPL 573

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL+ +P DD +T  L     T  IFQ  SSGM++ L  +QP   +D+   V+LYRPGPI 
Sbjct: 574  DLTRLPLDDPDTLRLFARGETQQIFQFNSSGMQEVLRKIQPRTFDDLSVAVALYRPGPIA 633

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +I +Y  RKNG   +    P +  +L  T G+ +YQEQVMQ A++ +G+SL+EAD+ R A
Sbjct: 634  SIPLYVARKNGTSPVQYPDPSLKEVLGPTYGIFVYQEQVMQTARIFAGFSLAEADIFRNA 693

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + KK    + ++K++F++GA + G S+  A  ++ L+  FA+YGFN SHA AYA+++Y  
Sbjct: 694  ISKKQAGLLAEEKDKFVAGAVRKGHSRQAAEAVYALIEPFANYGFNHSHAVAYALLAYWQ 753

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++  H+P EF      L     ++     + AR+  ++I+ P +N    + ++ + RIY
Sbjct: 754  AFLSVHFPREFYLEK--LRASRGKEKGAIIRQARKAGVEILGPDINLSRAEARLFEGRIY 811

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  I G+       ++  +  +P  S   F  ++D+K+L  + L  L+ AG  D    
Sbjct: 812  LGLKDIMGITPAFLDQLL--ALKRPVTSFTAFLRQLDTKELKEKQLVPLIEAGLFDQVSP 869

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LL +  N+   A+  +K+     ++  A ++         E   +  ++ +   E+
Sbjct: 870  NRASLLVNCGNMLNTARLSQKSLV--LQDFLAAKE---------ENVPMPTAAEKVAMEE 918

Query: 957  RVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            R +GF  +  PL++  K + ++ G K +        G  +   A  + K   + ++G++ 
Sbjct: 919  RAMGFAVTASPLEIAGKALAKRYGAKPFAGLALNETGQVL---AQFIKKNDWRVKRGAQA 975

Query: 1016 G 1016
            G
Sbjct: 976  G 976


>gi|116093219|gb|ABJ58372.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus
            delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 1159

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 305/1021 (29%), Positives = 496/1021 (48%), Gaps = 68/1021 (6%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            +Q  S+ ++L   +   +++         A+A+TD N  F   +F Q+A  AGI+P++G 
Sbjct: 1    MQTISANTILASPMKTADLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLG- 59

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                 +Q   K     +  +     +V L  + +GY+ L+ L S + +           L
Sbjct: 60   -----LQGRFKGIELEEAEY----DLVFLAQSQKGYKSLMRLSSFLNIASGDLAGPAPSL 110

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL---QRHR 190
            + L E+    +I+  G +S         NS +   K+L  F    G  LY+ +   +   
Sbjct: 111  ADLPELSDLTVIVPAGLTSELRQLNKLRNSGEEYVKKLQAFLPK-GLPLYLGVYPAESAA 169

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             YD Y    V +LA    LP+    +  +L   D     VL A+    V+ + +   +  
Sbjct: 170  AYDAY----VKKLAEISSLPITVVEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAE 225

Query: 251  ---DHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                H+L+    +     +  L EAL N+ +IA  C   +    P LP F +        
Sbjct: 226  GQGSHWLRPAPVLEDACREMGLEEALANSGKIAASCQAKIPFEEPQLPVFPQATG----L 281

Query: 306  EEENELRNKAVAGLE-VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              +  L   A AGLE + L QG     YHA     RL  EL VI +M F+ YFLIV D +
Sbjct: 282  SSDQYLEKLAFAGLEKLGLRQGI----YHA-----RLQKELAVIQQMGFADYFLIVGDIV 332

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             + ++    VGPGRGS AGS+ AYAL IT IDPL++ LLFERFLNP R  MPD D+DF  
Sbjct: 333  NYCRQKGALVGPGRGSAAGSLVAYALGITQIDPLKYDLLFERFLNPARADMPDIDLDFTT 392

Query: 425  DRRDEVIRYVQNKYG--------HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
              R     YVQ KYG         + VA+I+   +++AK+ L   G+   +    + RL 
Sbjct: 393  SGRKLAFAYVQEKYGAKARFGEGSDLVARILALTTMKAKSVLERTGQVFGLTLPAIARLK 452

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            + +        +L      + F+    A P    L + + +LEGL     THA G+VI +
Sbjct: 453  QAM----GAAKTLAEAGQQAEFKALVAASPLTRLLYQTAARLEGLPEDTGTHAPGLVISE 508

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
             PLS+ + +     + L   +   K++EK GL+K DFL L  L LL+  L  + +    +
Sbjct: 509  EPLSRQIGLMTGKEAPLWTVEQTKKYVEKYGLLKIDFLTLDNLELLEGVLAEIQKSSGPL 568

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL+ +P DD +T  L     T  IFQ  SSGM++ L  +QP   +D+   V+LYRPGPI 
Sbjct: 569  DLTRLPLDDPDTLRLFARGETQQIFQFNSSGMQEVLRKIQPRTFDDLSVAVALYRPGPIA 628

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +I +Y  RKNG   +    P +  +L  T G+ +YQEQVMQ A++ +G+SL+EAD+ R A
Sbjct: 629  SIPLYVARKNGTSPVQYPDPSLKEVLGPTYGIFVYQEQVMQTARIFAGFSLAEADIFRNA 688

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + KK    + ++K++F++GA + G S+  A  ++ L+  FA+YGFN SHA AYA+++Y  
Sbjct: 689  ISKKQAGLLAEEKDKFVAGAVRKGHSRQAAEAVYALIEPFANYGFNHSHAVAYALLAYWQ 748

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++  H+P EF      L     ++     + AR+  ++I+ P +N    + ++ + RIY
Sbjct: 749  AFLSVHFPREFYLEK--LRASRGKEKGAIIRQARKAGVEILGPDINLSRAEARLFEGRIY 806

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  I G+       ++  +  +P  S   F  ++D+K+L  + L  L+ AG  D    
Sbjct: 807  LGLKDIMGITPAFLDQLL--ALKRPVTSFTAFLRQLDTKELKEKQLVPLIEAGLFDQVSP 864

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LL +  N+   A+  +K+     ++  A ++         E   +  ++ +   E+
Sbjct: 865  NRASLLVNCGNMLNTARLSQKSLV--LQDFLAAKE---------ENVPMPTAAEKVAMEE 913

Query: 957  RVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            R +GF  +  PL++  K + ++ G K +        G  +   A  + K   + ++G++ 
Sbjct: 914  RAMGFAVTASPLEIAGKALAKRYGAKPFAGLALNETGQVL---AQFIKKNDWRVKRGAQA 970

Query: 1016 G 1016
            G
Sbjct: 971  G 971


>gi|306831259|ref|ZP_07464419.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            gallolyticus subsp. gallolyticus TX20005]
 gi|304426495|gb|EFM29607.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            gallolyticus subsp. gallolyticus TX20005]
          Length = 1035

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 305/1033 (29%), Positives = 501/1033 (48%), Gaps = 117/1033 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   +    +     I I D +NL++A  F ++A    +QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLEGYVKAAKSLGYQTIGIMDKDNLYAAFHFIEEAKKQSLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L   +++ L +             + LL     GY+ L+++ S+       + S  
Sbjct: 62   VGLELSFAVEETLSL------------KLYLLAQDTTGYKNLMKISSK-------QMSSD 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L  L +        LTG +   I   +F       E   L+                 
Sbjct: 103  IQLDELSD-------YLTGVA---IVVPYF------EELETLSLP--------------- 131

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             +D Y    V      +E P+       +    + E   +L A+  +  +S KD P  + 
Sbjct: 132  -FDYYIGVDVNSPQKAYEKPIFPLYTVRYFETNEVETLHMLHAIRDN--ISLKDAPPASQ 188

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               L     +   F +  P+ALEN  ++     +        LPRF      + QK  + 
Sbjct: 189  GQNLLACDILTQAFRETFPQALENQEKLVSNIHYEFDTDLK-LPRF------NRQKPAQE 241

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL  +  AGL         AK      Y++RL  EL+VI +M F  YFLIV D +++ + 
Sbjct: 242  ELIERTEAGLR--------AKNLWLPAYQERLKKELSVIHKMGFDDYFLIVWDLLRFGRS 293

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ +YAL IT IDP++ +LLFERFLN +R SMPD DID     R E
Sbjct: 294  RGYYMGMGRGSAAGSLVSYALDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYRSE 353

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             + YV+N+YG    AQI+TF +  AK A+RDV +    P  ++  + K I    +   +L
Sbjct: 354  FLHYVRNRYGSLHSAQIVTFSTFGAKQAIRDVFKRFGAPEHELTNITKKI----SFRDTL 409

Query: 490  QAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             ++ + +  FR+   +     +   I++++EG  R  S HAAG+V+ D  L++ +P+   
Sbjct: 410  TSVYEKNLSFRQIINSKIEYQKAFAIAKRIEGNPRQTSIHAAGVVMSDDNLTEHIPL--K 467

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D+ +TQ++ + +E  GL+K DFLGL+ LT +Q+  + +A+  GV +D+  I  +D +
Sbjct: 468  AGEDMMITQYDAQAVEANGLLKMDFLGLRNLTFVQRMQEKVAKDYGVTIDIKSIDLEDKK 527

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T GIFQ E +G    L+ +QP   EDI+A  SL RPG  D    +  R+ G
Sbjct: 528  TLELFAAGKTKGIFQFEQAGAINLLKRIQPRQFEDIVATTSLNRPGASDYTENFIKRRFG 587

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E++  I PL+ P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  ++M K
Sbjct: 588  QEEVDLIDPLVAPILEPTYGIMLYQEQVMQIAQIYAGFTLGKADLLRRAMSKKKADDMQK 647

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +  F+ G+ + G     A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F
Sbjct: 648  MESDFLEGSQRLGRPLETAKDLFSRMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVF 707

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
                +     +      +  DA     ++    +NT     K+ D +IY  L  ++GV  
Sbjct: 708  YDVMLNYSSAD------YITDALDSQFKVKKIDINTVPYSDKISDGQIYLGLKNLRGVPR 761

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                 I+E   ++PF S+EDF +R+      R ++  LV  GA D F  +R +++++LD 
Sbjct: 762  DLCYWIIE---NRPFSSVEDFLTRLPENYQKREMITPLVEVGAFDQFDKNRRKIIENLDP 818

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN--SSVRFENEQRVLGFYFSG 965
            +                 IF +E G+     +      E+  ++ ++  EQ +LG   S 
Sbjct: 819  LL----------------IFVNELGSLFADTSYSWIETEDYPNAEKYRLEQSLLGVGISP 862

Query: 966  HPL-----DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            HPL        K       ++   E+   +  N IR+         +   KG ++ +++ 
Sbjct: 863  HPLLEIARQSTKDFTALADLQENTEATILVELNQIRVI--------RTKTKGEQMAFLSV 914

Query: 1021 SEPAKEYEANFFP 1033
            ++  K+++   FP
Sbjct: 915  TDTQKKFDVTLFP 927


>gi|315613028|ref|ZP_07887939.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|315315138|gb|EFU63179.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
           sanguinis ATCC 49296]
          Length = 1043

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 302/964 (31%), Positives = 484/964 (50%), Gaps = 109/964 (11%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L   + YS +E  +S+   +          +AI D +NL+ A  F +      IQP++
Sbjct: 13  TQLDTKTVYSFMESVVSIEKYVQMAKEYGYSHLAIMDVDNLYGAYHFLEATRKHCIQPLV 72

Query: 72  GCQLD-IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           G ++  +  ++NL              S+  L  + +GYQ L++L +   L   G+++  
Sbjct: 73  GLEMTLVKDEENL--------------SLRFLALSTKGYQELMKLST---LKMTGRKNWS 115

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              S L+++     I++            +FN  +                     Q   
Sbjct: 116 DFTSHLEDVA----IIVP-----------YFNGVE---------------------QLDL 139

Query: 191 GYDRY--RESQVVQLAYTHE-LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           G D +        Q  +T   LPL   N+     +ED +   +L AV  +  VS +D   
Sbjct: 140 GVDYFIGVSPDTPQEVFTRPILPLYQVNS---FEKEDLQVLQILSAVKDN--VSLRDVDL 194

Query: 248 VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQK 305
            +        S++ + F +  P+AL N   +    S+  Q+   + LPRF      + ++
Sbjct: 195 HSQQGIFLPASDLEARFKNRFPQALANLQGLIENVSY--QIDTSLKLPRF------NPER 246

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               ELR +A         QG   KG  +  Y +RL+ EL VI  M F  YFL+V D ++
Sbjct: 247 PAVEELRERA--------EQGLSDKGLASAIYHERLNEELAVIHDMGFDDYFLVVWDLLR 298

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           + +     +G GRGS  GS+ AY+L IT IDP+  +L+FERFLN +R +MPD DID    
Sbjct: 299 FGRSQGYYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDL 358

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            R E IRYV+++YG + VAQI+T+ +  AK A+RDV +   +P  ++  + K I      
Sbjct: 359 YRPEFIRYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKIS---FR 415

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                A   + +FR+   +     +  EI++K+EG  R  S HAAG+V+ D+ L+  +P+
Sbjct: 416 DTLTTAYEKNLQFRQVINSKMEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDLTDYIPL 475

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
                 D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + LA+  GV + +  I  +
Sbjct: 476 --KYGEDMLITQYDAHGVEANGLLKMDFLGLRNLTFVQKMQELLAESEGVHLKIEEIDLE 533

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D ET  L     T GIFQ E  G  + L+ +QP   E+++A  SL RPG  D I  +  R
Sbjct: 534 DKETLALFAAGNTKGIFQFEQPGAIRLLKRVQPQVFEEVVATTSLNRPGASDYIDNFVAR 593

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           K+GKEK+  + P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK  +E
Sbjct: 594 KHGKEKVTVLDPALEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAKE 653

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M   KE FI+GA K G ++  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ KTHYP
Sbjct: 654 MHLMKEDFITGAMKLGHTEEKANQVFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYP 713

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             F    +     +      +  DA Q   ++ P ++N+     K+   +I+  L AIKG
Sbjct: 714 AIFFQVMLNYSSSD------YIVDALQMGFEVAPLAINSIPYHDKIAQKKIHLGLKAIKG 767

Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
           +    +  I+E   ++PF S+EDF +R+        +L  LV  G  D F  +R ++L +
Sbjct: 768 MPRDLSYWIIE---NRPFSSIEDFVTRLPKNYKKLSLLTPLVELGLFDEFDKNRQKILVN 824

Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
           L N+  + + +          +FA    ++++    + F+    + +F  EQ ++G   S
Sbjct: 825 LPNLFVFVEEL--------GGLFADTNYSWTEA---DDFT---EAEKFYKEQELIGVGIS 870

Query: 965 GHPL 968
            HPL
Sbjct: 871 PHPL 874


>gi|113475557|ref|YP_721618.1| DNA polymerase III subunit alpha / intein [Trichodesmium erythraeum
           IMS101]
 gi|110166605|gb|ABG51145.1| DNA polymerase III, alpha subunit / Intein [Trichodesmium
           erythraeum IMS101]
          Length = 2684

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 264/740 (35%), Positives = 413/740 (55%), Gaps = 82/740 (11%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+      PAIA+TD   ++ A++  +      I+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPQLIDRAVELGMPAIALTDHGVMYGAIQLIKLCRNKNIKP 61

Query: 70  IIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD- 123
           IIG ++     DI+ Q   K  +Q           V+L    +GY+ L++L +  +L   
Sbjct: 62  IIGNEMYVIKGDIEKQQRGKKFHQ-----------VVLAKNTQGYKNLVKLTTLSHLHGF 110

Query: 124 QGKQS-VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
           QGK    R C++  L E   EGLI+ +G  +G + +       + A+K    +K LFG+ 
Sbjct: 111 QGKGIFARPCINKELLEKYHEGLIVTSGCLAGEVPQNIMRGELEEAKKIAKWYKDLFGED 170

Query: 182 LYVNLQRHRGY--DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            Y+ +Q H G+  DR   + +V +A   ++ +VATN+S F+S  D EAHD L+ +    +
Sbjct: 171 YYLEIQDH-GFQEDRVVNTGIVTIAKKLKIKIVATNDSHFISCRDVEAHDALLCINTQKL 229

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRC----SFILQVHA 289
           ++++ R R +   YLK+  EM  +F D      + EA+ NT+E+A +       + +   
Sbjct: 230 IAEEKRMRYSGTEYLKSAEEMKQLFRDHLENEVIEEAIANTLEVANKVKAYEGILGEPRI 289

Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
           P  P   +   D         L   A +GL  RL      K   +  Y++R++ EL V+ 
Sbjct: 290 PDYPIPPDHNADTY-------LEKLAWSGLLERLK--LKQKSEISPIYKERMETELKVLQ 340

Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
              FS YFL+V D+I++A+ NNIPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLN
Sbjct: 341 DKGFSTYFLVVWDYIKYARDNNIPVGPGRGSAAGSLVAYSLRITNIDPVHHGLLFERFLN 400

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
           P+R SMPD D DFC + RD +I+YV  +YG ERVAQIITF  + +KA L+DVGR L + +
Sbjct: 401 PERKSMPDIDTDFCIENRDVMIKYVTQRYGEERVAQIITFNRMTSKAVLKDVGRVLGISF 460

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDS----RFREA--------------RLADPSVDRL 511
            + +++ KLIP     P  L+ +  D      F++A              +++  SV + 
Sbjct: 461 GEANKMAKLIPVARGKPAKLKVMISDETPSPEFKKAYDNQETPIEDNKAGKISTISVRQW 520

Query: 512 LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
           ++++ ++EG  +    HAAG+VI   PL ++VP+ R+    + +TQ++M+ IE  GL+K 
Sbjct: 521 IDMAIRIEGTNKTFGVHAAGVVISKEPLDEIVPLQRNNDGSV-ITQYHMEDIESLGLLKM 579

Query: 572 DFLGLKTLTLLQKSLDFLAQRG--------------------VKVDLSLIPFDDHETYHL 611
           DFLGLK LT++Q + + + +                       K +   +P D  +TY L
Sbjct: 580 DFLGLKNLTIIQNTAELIKKNHHLPLVPDDLPANERKAIEILAKGNTKKMPEDVKKTYDL 639

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
           + +    G+FQLESSGM   ++ ++P  IEDI ++++LYRPGP+D  ++  + +RK+G E
Sbjct: 640 IKSGDLEGVFQLESSGMVDVVKKLKPTSIEDISSILALYRPGPLDAGLIPKFIDRKHGSE 699

Query: 670 KIVSIHPLIDPMLKETQGVI 689
           KI   HP ++P+LKET GV+
Sbjct: 700 KIEYQHPKLEPILKETYGVL 719



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 11/72 (15%)

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            ++   MGKK   EM+K +E+FI GA++ G+S  +A ++FE + KFA+Y            
Sbjct: 2535 IVHNCMGKKKVSEMEKHREKFIDGAAQRGVSSVVAKDLFEQMIKFAEY-----------C 2583

Query: 772  ISYQTAWMKTHY 783
            ++Y+T  M   Y
Sbjct: 2584 LTYETEIMTVEY 2595



 Score = 46.2 bits (108), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 30/40 (75%), Gaps = 3/40 (7%)

Query: 686  QGVII---YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            +GV++   YQEQ+M++AQ L+GYSL EAD+LRR +    K
Sbjct: 2078 EGVVVHNCYQEQIMKMAQDLAGYSLGEADLLRRCLSGSTK 2117


>gi|301794047|emb|CBW36446.1| DNA polymerase III alpha subunit [Streptococcus pneumoniae INV104]
          Length = 1033

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 308/966 (31%), Positives = 497/966 (51%), Gaps = 115/966 (11%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLG 63

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQSVRI 131
            ++ + + D      QG        ++  L  ++ GYQ+L++L  ++M    QG+++  +
Sbjct: 64  LEMTVFVDD------QG-------VNLRFLALSSVGYQQLMKLSTAKM----QGEKTWSV 106

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              +L++I     +++            +F+  +  E          G   Y+ +     
Sbjct: 107 LSQYLEDIA----VIVP-----------YFDRVESLE---------LGCDYYIGV----- 137

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
              Y E+   +  +   LPL   N        D E   VL A+  +  +  ++ P  +  
Sbjct: 138 ---YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLRSRQ 188

Query: 252 HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               + S +  +F +  P+AL+N  ++    S+ L      LPRF      +  +    E
Sbjct: 189 DVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLK-LPRF------NPARPAVEE 241

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           LR +A  GL        + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 242 LRERAELGL--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294 GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DPAHP 486
           IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I        A+ 
Sbjct: 354 IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKSAYE 413

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM- 545
            +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+ 
Sbjct: 414 GNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLK 466

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
           Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +
Sbjct: 467 YGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLE 523

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  R
Sbjct: 524 DKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVAR 583

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           K+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ L+G+SL +AD+LRRAMGKK    
Sbjct: 584 KHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRLAGFSLGKADILRRAMGKKDASA 643

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP
Sbjct: 644 MHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYP 703

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             F    + L   N +    +  DA +   ++   S+NT     K+ +  IY  L +IKG
Sbjct: 704 AIFY--QVMLNSSNSD----YLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIKG 757

Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
           V    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +
Sbjct: 758 VSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNN 814

Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVLGFY 962
           L N+ +                F  E G+ F D I + ++        +F  EQ +LG  
Sbjct: 815 LANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELLGIG 858

Query: 963 FSGHPL 968
            S HPL
Sbjct: 859 VSKHPL 864


>gi|104773898|ref|YP_618878.1| DNA polymerase III, alpha subunit (DnaE) [Lactobacillus delbrueckii
            subsp. bulgaricus ATCC 11842]
 gi|103422979|emb|CAI97659.1| DNA polymerase III, alpha subunit (DnaE) [Lactobacillus delbrueckii
            subsp. bulgaricus ATCC 11842]
          Length = 1159

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 305/1021 (29%), Positives = 496/1021 (48%), Gaps = 68/1021 (6%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            +Q  S+ ++L   +   +++         A+A+TD N  F   +F Q+A  AGI+P++G 
Sbjct: 1    MQTISANTILASPMKTADLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLG- 59

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                 +Q   K     +  +     +V L  + +GY+ L+ L S + +           L
Sbjct: 60   -----LQGRFKGIELEEAEY----DLVFLAQSQKGYKSLMRLSSFLNIASGDLAGPAPSL 110

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL---QRHR 190
            + L E+    +I+  G +S         NS +   K+L  F    G  LY+ +   +   
Sbjct: 111  ADLPELSDLTVIVPAGLTSELRQLNKLRNSGEEYVKKLQAFLPK-GLPLYLGVYPAESAA 169

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             YD Y    V +LA    LP+    +  +L   D     VL A+    V+ + +   +  
Sbjct: 170  AYDAY----VKKLAEISALPITVVEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAQ 225

Query: 251  ---DHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                H+L+    +     +  L EAL N+ +IA  C   +    P LP F +        
Sbjct: 226  GQGSHWLRPAPVLEDACREMGLEEALANSGKIAASCQAKIPFKEPQLPVFPQATG----L 281

Query: 306  EEENELRNKAVAGLE-VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              +  L   A AG+E + L QG     YHA     RL  EL VI +M F+ YFLIV D +
Sbjct: 282  SSDQYLEKLAFAGMEKLGLRQGI----YHA-----RLQKELAVIQQMGFADYFLIVGDIV 332

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             + ++    VGPGRGS AGS+ AYAL IT IDPL++ LLFERFLNP R  MPD D+DF  
Sbjct: 333  NYCRQKGALVGPGRGSAAGSLVAYALGITQIDPLKYDLLFERFLNPARADMPDIDLDFTT 392

Query: 425  DRRDEVIRYVQNKYG--------HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
              R     YVQ KYG         + VA+I+   +++AK+ L   G+   +    + RL 
Sbjct: 393  SGRKLAFAYVQEKYGVKARFGEGSDLVARILALTTMKAKSVLERTGQVFGLTLPAIARLK 452

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            + +        +L      + F+    A P    L + + +LEGL     THA G+VI +
Sbjct: 453  QAM----GAAKTLAEAGQQAEFKALVAASPLTRLLYQTAARLEGLPEDTGTHAPGLVISE 508

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
             PLS+ + +     + L   +   K++EK GL+K DFL L  L LL+  L  + +    +
Sbjct: 509  EPLSRQIGLMTGKEAPLWTVEQTKKYVEKYGLLKIDFLTLDNLELLEGVLAEIQKSSGPL 568

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL+ +P DD +T  L     T  IFQ  SSGM++ L  +QP   +D+   V+LYRPGPI 
Sbjct: 569  DLTRLPLDDPDTLRLFARGETQQIFQFNSSGMQEVLRKIQPRTFDDLSVAVALYRPGPIA 628

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +I +Y  RKNG   +    P +  +L  T G+ +YQEQVMQ A++ +G+SL+EAD+ R A
Sbjct: 629  SIPLYVARKNGTSPVQYPDPSLKEVLGPTYGIFVYQEQVMQTARIFAGFSLAEADIFRNA 688

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + KK    + ++K++F++GA + G S+  A  ++ L+  FA+YGFN SHA AYA+++Y  
Sbjct: 689  ISKKQAGLLAEEKDKFVAGAVRKGHSRQAAEAVYALIEPFANYGFNHSHAVAYALLAYWQ 748

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++  H+P EF      L     ++     + AR+  ++I+ P +N    + ++ + RIY
Sbjct: 749  AFLSVHFPREFYLEK--LRASRGKEKGAIIRQARKAGVEILGPDINLSRAEARLFEGRIY 806

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  I G+       ++  +  +P  S   F  ++D+K+L  + L  L+ AG  D    
Sbjct: 807  LGLKDIMGITPAFLDQLL--ALKRPVTSFTAFLRQLDTKELKEKQLVPLIEAGLFDQVSP 864

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LL +  N+   A+  +K+     ++  A ++         E   +  ++ +   E+
Sbjct: 865  NRASLLVNCGNMLNTARLSQKSLV--LQDFLAAKE---------ENVPMPTAAEKVAMEE 913

Query: 957  RVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            R +GF  +  PL++  K + ++ G K +        G  +   A  + K   + ++G+R 
Sbjct: 914  RAMGFAVTASPLEIAGKALAKRYGAKPFAGLALNETGQVL---AQFIKKNDWRVKRGARA 970

Query: 1016 G 1016
            G
Sbjct: 971  G 971


>gi|289167846|ref|YP_003446115.1| DNA-polymerase III alpha-chain [Streptococcus mitis B6]
 gi|288907413|emb|CBJ22250.1| DNA-polymerase III alpha-chain [Streptococcus mitis B6]
          Length = 1042

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 311/971 (32%), Positives = 502/971 (51%), Gaps = 111/971 (11%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQ-QPAIAITDTNNLFSALEFSQKACA 64
           EK      L   + YS +E  +S++  + ++A D     +A+ D +NL+ A +F +    
Sbjct: 6   EKCKLIAQLDTKTVYSFMESVISIDKYV-RVAKDYGYTHLAMMDIDNLYGAFDFLEVTKK 64

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLD 123
            GI P++G ++++ + D  K  N           +  L  ++ GYQ+L++L  ++M    
Sbjct: 65  YGIHPLLGLEMNVLVDD--KDVN-----------LRFLALSSVGYQQLMKLSTAKM---- 107

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
           QG++S  +   +L++I               +   +F       E  LL      G   Y
Sbjct: 108 QGEKSWSVLSQYLEDIA--------------VIVPYF------EELELLNL----GCDYY 143

Query: 184 VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
           + +        Y E+   +  Y   LPL   N       +D E   VL A+  +  +  +
Sbjct: 144 IGV--------YPETLASEFHYPI-LPLYRVNT---FESKDREVLQVLTAIKEN--LPLR 189

Query: 244 DRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           + P  +      + S +  +F +  P+ALEN  ++     + L      LPRF      +
Sbjct: 190 EVPLRSRQDVFISASSLEKLFQERFPQALENLEKLISGIYYDLDTSLK-LPRF------N 242

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             +    ELR +A    E+ LAQ    KG   ++Y+ RLD EL VI  M F  YFL+V D
Sbjct: 243 PARPAVEELRERA----ELGLAQ----KGLTGKEYQDRLDQELAVIHDMGFDDYFLVVWD 294

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +++ + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID 
Sbjct: 295 LLRFGRSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDI 354

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN- 481
               R + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I   
Sbjct: 355 PDIYRPDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFSVPEYELSAITKKISFR 414

Query: 482 ---DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ 
Sbjct: 415 DNLKSAYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQD 467

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
           L+  +P+      ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + 
Sbjct: 468 LTDYIPLKHG--DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLK 525

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           +  I  +D++T  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D 
Sbjct: 526 IEEIDLEDNDTLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDY 585

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           I  +  RK+G+E++  + P ++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAM
Sbjct: 586 INNFVARKHGQEEVTVLDPALEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAM 645

Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
           GKK    M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A
Sbjct: 646 GKKDASAMHEMRASFIQGSIEAGHTAEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLA 705

Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
           + KTHYP  F    + L   N +    +  DA +   ++ P S+NT     K+ +  IY 
Sbjct: 706 YFKTHYPAIFY--QIMLNSANSD----YLSDALEAGFEVAPLSINTIPYHDKIANKSIYL 759

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L +IKG+    A  I+E    +P+ ++EDF +++    L   +LE LV  G  D F  +
Sbjct: 760 GLKSIKGLSKDLALWIIE---HRPYSNIEDFLAKLPENYLKLPLLEPLVKVGLFDSFEKN 816

Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
           R ++  +L N+ ++ + +         ++F     ++ D    E ++ +    +F  EQ 
Sbjct: 817 RQKVFNNLANLFEFVKVL--------GSLFGETIYSWLDS---EDWTEQE---KFYMEQE 862

Query: 958 VLGFYFSGHPL 968
           +LG   S HPL
Sbjct: 863 LLGVGVSKHPL 873


>gi|149019479|ref|ZP_01834798.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP23-BS72]
 gi|147930854|gb|EDK81834.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP23-BS72]
          Length = 1033

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 308/969 (31%), Positives = 495/969 (51%), Gaps = 121/969 (12%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLG 63

Query: 73  CQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQS 128
            ++ +   D + NL+                 L  ++ GYQ+L++L  ++M    QG ++
Sbjct: 64  LEMTVFVDDQEVNLR----------------FLALSSVGYQQLMKLSTAKM----QGVKT 103

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +   +L++I     +++            +F+  +  E          G   Y+ +  
Sbjct: 104 WSVLSQYLEDIA----VIVP-----------YFDRVESLE---------LGCDYYIGV-- 137

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 Y E+   +  +   LPL   N        D E   VL A+  +  +  ++ P  
Sbjct: 138 ------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLR 185

Query: 249 TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           +      + S +  +F +  P+AL+N  ++    S+ L      LPRF      +  +  
Sbjct: 186 SRQDVFISASSLEKLFQECFPQALDNLEKLISGISYDLDTSLK-LPRF------NPARPA 238

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             ELR +A  GL        + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ 
Sbjct: 239 VEELRERAELGL--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFG 290

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R
Sbjct: 291 RSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYR 350

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DP 483
            + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I        
Sbjct: 351 PDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +
Sbjct: 411 AYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYI 463

Query: 544 PM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
           P+ Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I
Sbjct: 464 PLKYGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEI 520

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +
Sbjct: 521 DLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNF 580

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK 
Sbjct: 581 VARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKD 640

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KT
Sbjct: 641 ASAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKT 700

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           HYP  F    + L   N +    +  DA +   ++ P S+NT     K+ +  IY  L +
Sbjct: 701 HYPAIFY--QIMLNSANSD----YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKS 754

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++
Sbjct: 755 IKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKV 811

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVL 959
             +L N+ +                F  E G+ F D I + ++        +F  EQ +L
Sbjct: 812 FNNLANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELL 855

Query: 960 GFYFSGHPL 968
           G   S HPL
Sbjct: 856 GIGVSKHPL 864


>gi|296876766|ref|ZP_06900814.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            parasanguinis ATCC 15912]
 gi|296432268|gb|EFH18067.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            parasanguinis ATCC 15912]
          Length = 1039

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 316/1033 (30%), Positives = 528/1033 (51%), Gaps = 109/1033 (10%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E+    V L   + Y+ +E  +++ + +    +    A+ I D +NL+ A EF +   A 
Sbjct: 3    EEKTVIVQLDTKTVYTFMESLVTIKDYVQVAKSMGYDALGIMDVDNLYGAYEFIEACQAH 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
             + P++G ++ +++ +             T+P  ++ +ST  GYQ L+++ +   L   G
Sbjct: 63   NLSPLVGLEVGLEVDNE------------TIPFRMIALST-RGYQNLMKMST---LKMMG 106

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            K +      W      E +  LT G +  +   F   +S+     L  F  +F D     
Sbjct: 107  KNN------W------EDVKHLTEGVAVIVPAPF---ASEDLPLGLDYFIGVFAD----- 146

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-- 243
                           VQ  ++H  P++      F  EED EA  +L A+  +  +++   
Sbjct: 147  -------------TPVQ-EFSH--PVLPLYTVRFFEEEDVEAMQMLAAIKDNQSLTETGP 190

Query: 244  DRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            + PR      LK   ++ + F++  P+A+ N  ++ +   + +      LPRF      +
Sbjct: 191  NDPRTV----LKTPQDLKNDFAERFPQAITNLEKLVQGIQYDIDTQLK-LPRF------N 239

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             QK    ELR  A AGL        + K      Y++RL+ EL++I +M F  YFLIV D
Sbjct: 240  SQKPAVEELRELAQAGL--------LRKNLTNPVYQERLEHELDIIHQMGFDDYFLIVWD 291

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++ +     +G GRGS  GS+ AYAL IT IDP+  +LLFERFLN +R +MPD DID 
Sbjct: 292  LLRFGRSQGYYMGMGRGSAVGSLVAYALEITGIDPVEKNLLFERFLNVERYTMPDIDIDI 351

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-N 481
                R E IRYV+++YG    AQI+TF +  AK A+RDV +   +P  ++  + K I   
Sbjct: 352  PDIYRPEFIRYVRDRYGSYHAAQIVTFSTFGAKQAIRDVFKRFGVPEYELTSITKRIGFR 411

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            D       Q +A    FR+   +     R  EI++++EG  R  S HAAG+V+ D+ L+ 
Sbjct: 412  DTLTTAYEQNLA----FRQVIHSRAEFKRGFEIAKRIEGQPRQTSIHAAGVVMSDQDLTD 467

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSL 600
             VP+      D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + + ++   ++ +  
Sbjct: 468  HVPL--KYGEDMFVTQYDAHAVEANGLLKMDFLGLRNLTFVQKMKEAVYEKYQEEIVIEA 525

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            I  +D  T  L     T GIFQ E +G  + L  ++P+  E+++A  SL RPG  D I  
Sbjct: 526  IDLEDPATLALFAAGDTKGIFQFEQAGAIRLLRRVRPNHFEEVVATTSLNRPGASDYIDN 585

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RK+G+EK+  + P I+ +L+ T G+++YQEQVMQ+AQ  +G++L +AD+LRRAMGKK
Sbjct: 586  FVKRKHGQEKVDILDPAIEEILRPTYGIMLYQEQVMQVAQRFAGFTLGKADILRRAMGKK 645

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               EM K ++ F++GA K G ++  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K
Sbjct: 646  NATEMHKMEDDFVTGALKLGHTEEKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQMAYFK 705

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYP  F    +     +      +  DA QF+ ++ P S+NT     K  D +IY  + 
Sbjct: 706  VHYPDVFFDVMLNYSSSD------YLTDALQFDFKVAPLSINTIPYRDKFQDRKIYLGMK 759

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             IKG+    A  I++   ++PF+S+EDF  R+ ++     +L  LV  G  D F  +R +
Sbjct: 760  NIKGLPRDLAYWIID---NRPFESVEDFILRLPNQYHKLPLLTPLVELGLFDNFEKNRRK 816

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +L +L N+  +A        ++  ++FA    ++++    E +S    + ++E E+ ++G
Sbjct: 817  VLHNLPNLFVFA--------DELGSLFADSNYSWTEA---EDYS---QAEKYEKEEAIIG 862

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
               S HPL      + +      +     I+G   R+   V S +  +T+ G  + ++  
Sbjct: 863  IGLSTHPLVA----IGQTSPYEIQPISQLIQGEQARILIEVQSIRTIRTKSGDLMAFLQV 918

Query: 1021 SEPAKEYEANFFP 1033
            S+  K+ +   FP
Sbjct: 919  SDTKKKLDVTLFP 931


>gi|188024087|ref|ZP_02996828.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 7
            str. ATCC 27819]
 gi|188019132|gb|EDU57172.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 7
            str. ATCC 27819]
          Length = 969

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 274/777 (35%), Positives = 429/777 (55%), Gaps = 43/777 (5%)

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            +Y  N  E  S+FS +  AL+N  ++       LQV    LP  I     +        L
Sbjct: 176  NYFLNDHEAQSLFSTI--ALDNLNKVLNE----LQVEIHDLPINIPVYDKNNLTVSSEIL 229

Query: 312  RNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            +   ++GL+ RL    G + K Y      QRL +EL+VI+  +F  YFLIV DFI +AK 
Sbjct: 230  KQLCISGLKQRLNAHDGQVKKAY-----AQRLKYELDVISEKQFDDYFLIVYDFINYAKS 284

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D   ++RD+
Sbjct: 285  NGIIVGPGRGSAAGSLVAYCLYITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKRDQ 344

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI Y+  KYG++ VA I+TF  L+AK ALRDVGR L +    +D++CK I  D    + L
Sbjct: 345  VIEYLFEKYGNDHVAYIVTFQRLKAKMALRDVGRILGIDLKVIDKICKNIKTDYDEDIDL 404

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             AI   +  +E  +       L EIS+KL    R   THAAGI++ +  ++ ++P+   +
Sbjct: 405  -AIKKSATLKEMYVLHK---ELFEISKKLIHAPRQIGTHAAGIILSNSSITNIIPIQLGI 460

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
             +D P++Q++M+++E+ GLIK D LGLK LT++   L  + + +  K+DL  I ++D   
Sbjct: 461  -NDRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIYKTQNKKIDLFNIDYNDKFV 519

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            +  L    T GIFQLES GM++ L  ++P  IEDI  + +L+RPGP  NI  +  R+  +
Sbjct: 520  FQDLAKAKTNGIFQLESPGMKKVLLKVKPQNIEDISIVSALFRPGPQQNIKTFVERRFKR 579

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E+    +     +L+ T G+IIYQEQV+++ + ++ + ++ +D  RRA+ K+ ++ + + 
Sbjct: 580  EEFSYWNEQTKKILEPTYGIIIYQEQVIELVKTIANFDIATSDNFRRAISKEDEKILMQL 639

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K+ FI+GA  N   + +   IFE +  FA YGFN SH+ AY+ ISY  A++K +YP+EFL
Sbjct: 640  KDDFINGALANNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYPLEFL 699

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVG 846
            +  ++    + EK+  +  +A+ FNI I  P +     DF + +++  I +    IKG G
Sbjct: 700  SVLLSHTSASKEKLLSYLDEAKDFNISIKGPDIQHFSNDFVIDNHKQIIRFGFKTIKGFG 759

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKK---LNRRVLESLVFAGALDCFGYSRMQLLQ 903
                + I  A  +     L D+ S +D+ K   ++ + +E L+  GA D F  +R+ LL 
Sbjct: 760  DELLKKIKLALENA---ELSDYISYIDALKKGNISLKNIEILIRIGAFDSFEINRLFLLN 816

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL-EKFSVENSSVRFENEQRVLGFY 962
            +L+ I       EK   N H          +++ +++ E+F         E+E + LG  
Sbjct: 817  NLEEI------FEKTGLNGHFFDLNLVGLDYANDMSINERFQ--------EDEIQYLGIN 862

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWV 1018
             S      Y   +    +K   ES   I  N  + + A V++  Q KT+KG+ I ++
Sbjct: 863  LSSLNYTNYTNEIDYSNLKYEIESFNEINTNYEVNIVAQVLNIVQSKTKKGNDIFYL 919



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 43/66 (65%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F++L VHS YSLL  ALS+++++     + QP + +TD NN++  +EF  KA A  + PI
Sbjct: 2  FINLNVHSYYSLLNSALSIDDLIQHALDNNQPYVCLTDLNNMYGCIEFYDKAKAHNLIPI 61

Query: 71 IGCQLD 76
          IG + +
Sbjct: 62 IGLEFE 67


>gi|288905189|ref|YP_003430411.1| DNA polymerase III, subunit alpha [Streptococcus gallolyticus UCN34]
 gi|288731915|emb|CBI13480.1| DNA polymerase III, subunit alpha [Streptococcus gallolyticus UCN34]
          Length = 1035

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 305/1033 (29%), Positives = 500/1033 (48%), Gaps = 117/1033 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   +    +     I I D +NL++A  F ++A    +QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLEGYVKAAKSLGYQTIGIMDKDNLYAAFHFIEEAKKQSLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L   +++ L +             + LL     GY+ L+++ S+       + S  
Sbjct: 62   VGLELSFAVEETLSL------------KLYLLAQDTTGYKNLMKISSK-------QMSSD 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L  L +        LTG +   I   +F       E   L+                 
Sbjct: 103  IQLDELSD-------YLTGVA---IVVPYF------EELETLSLP--------------- 131

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             +D Y    V      +E P+       +    + E   +L A+  +  +S KD P  + 
Sbjct: 132  -FDYYIGVDVNSPQKAYEKPIFPLYTVRYFETNEVETLHMLHAIRDN--ISLKDAPPASQ 188

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               L     +   F +  P+ALEN  ++     +        LPRF      + QK  + 
Sbjct: 189  GQNLLACDILTQAFRETFPKALENQEKLVSNIHYEFDTDLK-LPRF------NRQKPAQE 241

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL  +  AGL         AK      Y++RL  EL+VI +M F  YFLIV D +++ + 
Sbjct: 242  ELIERTEAGLR--------AKNLWLPAYQERLKKELSVIHKMGFDDYFLIVWDLLRFGRS 293

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ +YAL IT IDP++ +LLFERFLN +R SMPD DID     R E
Sbjct: 294  RGYYMGMGRGSAAGSLVSYALDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYRSE 353

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             + YV+N+YG    AQI+TF +  AK A+RDV +    P  ++  + K I    +   +L
Sbjct: 354  FLHYVRNRYGSLHSAQIVTFSTFGAKQAIRDVFKRFGAPEHELTNITKKI----SFRDTL 409

Query: 490  QAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             ++ + +  FR+   +     +   I++++EG  R  S HAAG+V+ D  L++ +P+   
Sbjct: 410  TSVYEKNLSFRQIINSKIEYQKAFAIAKRIEGNPRQTSIHAAGVVMSDDNLTEHIPL--K 467

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D+ +TQ++ + +E  GL+K DFLGL+ LT +Q+  + +A+  GV +D+  I  +D +
Sbjct: 468  AGEDMMITQYDAQAVEANGLLKMDFLGLRNLTFVQRMQEKVAKDYGVTIDIKSIDLEDKK 527

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T GIFQ E +G    L+ +QP   EDI+A  SL RPG  D    +  R+ G
Sbjct: 528  TLELFAAGKTKGIFQFEQAGAINLLKRIQPRQFEDIVATTSLNRPGASDYTENFIKRRFG 587

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E++  I PL+ P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  ++M K
Sbjct: 588  QEEVDLIDPLVAPILEPTYGIMLYQEQVMQIAQIYAGFTLGKADLLRRAMSKKKADDMQK 647

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +  F+ G+ + G     A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F
Sbjct: 648  MESDFLEGSQRLGRPLETAKDLFSRMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVF 707

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
                +     +      +  DA     ++    +NT     K+ D +IY  L  ++GV  
Sbjct: 708  YDVMLNYSSAD------YITDALDSQFKVKKIDINTVPYSDKISDGQIYLGLKNLRGVPR 761

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                 I+E   ++PF S EDF +R+      R ++  LV  GA D F  +R +++++LD 
Sbjct: 762  DLCYWIIE---NRPFSSAEDFLTRLPENYQKREMITPLVEVGAFDQFDKNRRKIIENLDP 818

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN--SSVRFENEQRVLGFYFSG 965
            +                 IF +E G+     +      E+  ++ ++  EQ +LG   S 
Sbjct: 819  LL----------------IFVNELGSLFADTSYSWIETEDYPNAEKYRLEQSLLGVGISP 862

Query: 966  HPL-----DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            HPL        K       ++   E+   +  N IR+         +   KG ++ +++ 
Sbjct: 863  HPLLEIARQSTKDFTALADLQENTEATILVELNQIRVI--------RTKTKGEQMAFLSV 914

Query: 1021 SEPAKEYEANFFP 1033
            ++  K+++   FP
Sbjct: 915  TDTQKKFDVTLFP 927


>gi|307704719|ref|ZP_07641617.1| DNA polymerase III subunit alpha [Streptococcus mitis SK597]
 gi|307621725|gb|EFO00764.1| DNA polymerase III subunit alpha [Streptococcus mitis SK597]
          Length = 1033

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 314/971 (32%), Positives = 493/971 (50%), Gaps = 125/971 (12%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S++  +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIDKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIYPLLG 63

Query: 73  CQLDI--DMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQS 128
            ++ +  D Q+ NL+                 L  ++ GYQ+L++L  ++M    QG++S
Sbjct: 64  LEMTVFVDAQEVNLR----------------FLALSSVGYQQLMKLSTAKM----QGEKS 103

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +   +L++I                                      F +   +NL  
Sbjct: 104 WSVLSQYLEDIAV--------------------------------IVPYFEEIESLNL-- 129

Query: 189 HRGYDRY--RESQVVQLAYTHE-LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             GYD Y     + +   + H  LPL   N        D E   VL A+  +  +  ++ 
Sbjct: 130 --GYDYYIGVYPETLTSEFHHPILPLYRVNA---FESRDREVLQVLTAIKEN--LPLREV 182

Query: 246 PRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
           P  +    L + S +  +F +  P+ALEN  ++    S+ L      LPRF      +  
Sbjct: 183 PLRSRQDVLISASSLEKLFQERFPQALENLEKLISGISYDLDTSLK-LPRF------NPA 235

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
           +    ELR +A    E+ LAQ    KG  +++Y+ RLD EL VI  M F  YFL+V D +
Sbjct: 236 RPAVEELRERA----ELGLAQ----KGLSSKEYQDRLDQELAVIHDMGFDDYFLVVWDLL 287

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           ++ + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID   
Sbjct: 288 RFGRSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPD 347

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN--- 481
             R + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I     
Sbjct: 348 IYRPDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN 407

Query: 482 -DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+
Sbjct: 408 LKSAYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLT 460

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             +P+      ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + + 
Sbjct: 461 NYIPLKHG--DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAKIEDIHLKIE 518

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            I  +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I 
Sbjct: 519 EIDLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYIN 578

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +  RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGK
Sbjct: 579 NFVARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGK 638

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K    M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ 
Sbjct: 639 KDASAMHEMRASFIQGSLEAGHTAEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYF 698

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
           KTHYP  F    + L   N +    +  DA +   ++ P S+NT     K+ +  IY  L
Sbjct: 699 KTHYPAIFY--QVMLNSANSD----YLTDALEAGFEVAPLSINTIPYHDKIANKSIYLGL 752

Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            +IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R 
Sbjct: 753 KSIKGVSKDLALWIIE---NRPYSNIEDFIAKLPDNYLKLPLLEPLVKVGLFDLFEKNRQ 809

Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKITLEKFSVE-NSSVRFENEQR 957
           ++  +L N+ +                F  E G+ F D I   + S +     +F  EQ 
Sbjct: 810 KVFNNLVNLFE----------------FVKELGSLFGDTIYNWQESEDWTDQEKFYMEQE 853

Query: 958 VLGFYFSGHPL 968
           +LG   S HPL
Sbjct: 854 LLGIGVSKHPL 864


>gi|15902839|ref|NP_358389.1| DNA polymerase III DnaE [Streptococcus pneumoniae R6]
 gi|15458393|gb|AAK99599.1| DNA-polymerase III alpha-chain [Streptococcus pneumoniae R6]
          Length = 1042

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 309/976 (31%), Positives = 497/976 (50%), Gaps = 121/976 (12%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           EK      L   + YS +E  +S+   +          +A+ D +NL+ A +F +     
Sbjct: 6   EKCKLIAQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKY 65

Query: 66  GIQPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYL 121
           GI P++G ++ +   D + NL+                 L  ++ GYQ+L++L  ++M  
Sbjct: 66  GIHPLLGLEMTVFVDDQEVNLR----------------FLALSSVGYQQLMKLSTAKM-- 107

Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             QG+++  +   +L++I     +++            +F+  +  E          G  
Sbjct: 108 --QGEKTWSVLSQYLEDIA----VIVP-----------YFDRVESLE---------LGCD 141

Query: 182 LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +        Y E+   +  +   LPL   N        D E   VL A+  +  + 
Sbjct: 142 YYIGV--------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LP 187

Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            ++ P  +      + S +  +F +  P+AL+N  ++    S+ L      LPRF     
Sbjct: 188 LREVPLRSRQDVFISASSLEKLFQECFPQALDNLEKLISGISYDLDTSLK-LPRF----- 241

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +  +    ELR +A  GL        + KG  +++Y+ RLD EL+VI  M F  YFL+V
Sbjct: 242 -NPARPAVEELRERAELGL--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVV 292

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            D +++ + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DI
Sbjct: 293 WDLLRFGRSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDI 352

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           D     R + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I 
Sbjct: 353 DIPDIYRPDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKIS 412

Query: 481 N----DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                  A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D
Sbjct: 413 FRDNLKSAYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISD 465

Query: 537 RPLSQLVPM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
           + L+  +P+ Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+
Sbjct: 466 QDLTNYIPLKYGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGI 522

Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            + +  I  +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG 
Sbjct: 523 HLKIEEIDLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGA 582

Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            D I  +  RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LR
Sbjct: 583 SDYINNFVARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILR 642

Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           RAMGKK    M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++
Sbjct: 643 RAMGKKDASAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAF 702

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
           Q A+ KTHYP  F    + L   N +    +  DA +   ++   S+NT     K+ +  
Sbjct: 703 QLAYFKTHYPAIFY--QVMLNSSNSD----YLIDALEAGFEVASLSINTIPYHDKIANKA 756

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
           IY  L +IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F
Sbjct: 757 IYLGLKSIKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSF 813

Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRF 952
             +R ++  +L N+ +                F  E G+ F D I + ++        +F
Sbjct: 814 EKNRQKVFNNLANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKF 857

Query: 953 ENEQRVLGFYFSGHPL 968
             EQ +LG   S HPL
Sbjct: 858 YMEQELLGIGVSKHPL 873


>gi|325978163|ref|YP_004287879.1| DNA polymerase III DnaE [Streptococcus gallolyticus subsp.
            gallolyticus ATCC BAA-2069]
 gi|325178091|emb|CBZ48135.1| DNA polymerase III DnaE [Streptococcus gallolyticus subsp.
            gallolyticus ATCC BAA-2069]
          Length = 1035

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 309/1036 (29%), Positives = 504/1036 (48%), Gaps = 123/1036 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   +    +     I I D +NL++A  F ++A    +QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLEGYVKAAKSLGYQTIGIMDKDNLYAAFHFIEEAKKQSLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L   +++ L +             + LL     GY+ L+++ S+       + S  
Sbjct: 62   VGLELSFAVEETLSL------------KLYLLAQDTTGYKNLMKISSK-------QMSSD 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L  L +        LTG +   I   +F       E   L+                 
Sbjct: 103  IQLDELSD-------YLTGVA---IVVPYF------EELETLSLP--------------- 131

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             +D Y    V      +E P+       +    + E   +L A+  +  +S KD P  + 
Sbjct: 132  -FDYYIGVDVNSPQKAYEKPIFPLYTVRYFETNEVETLHMLHAIRDN--ISLKDAPPASQ 188

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               L     +   F +  P+ALEN  ++     +        LPRF      + QK  + 
Sbjct: 189  GQNLLACDILTQAFRETFPQALENQEKLVSNIHYEFDTDLK-LPRF------NRQKPAQE 241

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL  +  AGL         AK      Y++RL  EL+VI +M F  YFLIV D +++ + 
Sbjct: 242  ELIERTEAGLR--------AKNLWLPAYQERLKKELSVIHKMGFDDYFLIVWDLLRFGRS 293

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ +YAL IT IDP++ +LLFERFLN +R SMPD DID     R E
Sbjct: 294  RGYYMGMGRGSAAGSLVSYALDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYRSE 353

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             + YV+N+YG    AQI+TF +  AK A+RDV +    P  ++  + K I    +   +L
Sbjct: 354  FLHYVRNRYGSLHSAQIVTFSTFGAKQAIRDVFKRFGAPEHELTNITKKI----SFRDTL 409

Query: 490  QAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             ++ + +  FR+   +     +   I++++EG  R  S HAAG+V+ D  L++ +P+   
Sbjct: 410  TSVYEKNLSFRQIINSKIEYQKAFAIAKRIEGNPRQTSIHAAGVVMSDDNLTEHIPL--K 467

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D+ +TQ++ + +E  GL+K DFLGL+ LT +Q+  + +A+  GV +D+  I  +D +
Sbjct: 468  AGEDMMITQYDAQAVEANGLLKMDFLGLRNLTFVQRMQEKVAKDYGVTIDIKSIDLEDKK 527

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T GIFQ E +G    L+ +QP   EDI+A  SL RPG  D    +  R+ G
Sbjct: 528  TLELFAAGKTKGIFQFEQAGAINLLKRIQPRQFEDIVATTSLNRPGASDYTENFIKRRFG 587

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E++  I PL+ P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  ++M K
Sbjct: 588  QEEVDLIDPLVAPILEPTYGIMLYQEQVMQIAQIYAGFTLGKADLLRRAMSKKKADDMQK 647

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +  F+ GA + G     A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F
Sbjct: 648  MESDFLEGAQRLGRPLETAKDLFSRMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVF 707

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
                +     +      +  DA     ++    +NT     K+   +IY  L  ++GV  
Sbjct: 708  YDVMLNYSSAD------YITDALDSQFKVKKIDINTVPYSDKISAGQIYLGLKNLRGVPR 761

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                 I+E   ++PF S+EDF +R+      R ++  LV  GA D F  +R +++++LD 
Sbjct: 762  DLCYWIIE---NRPFSSVEDFLTRLPENYQKREMITPLVEVGAFDQFDKNRRKIIENLDP 818

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGT-FSDK----ITLEKFSVENSSVRFENEQRVLGFY 962
            +                 IF +E G+ F+D     I  E +S   ++ ++  EQ +LG  
Sbjct: 819  L----------------FIFVNELGSLFADTSYSWIETEDYS---NAEKYRLEQSLLGVG 859

Query: 963  FSGHPL-----DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             S HPL        K       ++   E+   +  N IR+         +   KG ++ +
Sbjct: 860  ISPHPLLEIARQSTKDFTALADLQENTEATILVELNQIRVI--------RTKTKGEQMAF 911

Query: 1018 VTFSEPAKEYEANFFP 1033
            ++ ++  K+++   FP
Sbjct: 912  LSVTDTQKKFDVTLFP 927


>gi|298503097|ref|YP_003725037.1| DNA polymerase III DnaE [Streptococcus pneumoniae TCH8431/19A]
 gi|298238692|gb|ADI69823.1| DNA polymerase III DnaE [Streptococcus pneumoniae TCH8431/19A]
          Length = 1042

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 309/976 (31%), Positives = 497/976 (50%), Gaps = 121/976 (12%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           EK      L   + YS +E  +S+   +          +A+ D +NL+ A +F +     
Sbjct: 6   EKCKLIAQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKY 65

Query: 66  GIQPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYL 121
           GI P++G ++ +   D + NL+                 L  ++ GYQ+L++L  ++M  
Sbjct: 66  GIHPLLGLEMTVFVDDQEVNLR----------------FLALSSVGYQQLMKLSTAKM-- 107

Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             QG+++  +   +L++I     +++            +F+  +  E          G  
Sbjct: 108 --QGEKTWSVLSQYLEDIA----VIVP-----------YFDRVESLE---------LGCD 141

Query: 182 LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +        Y E+   +  +   LPL   N        D E   VL A+  +  + 
Sbjct: 142 YYIGV--------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LP 187

Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            ++ P  +      + S +  +F +  P+AL+N  ++    S+ L      LPRF     
Sbjct: 188 LREVPLRSRQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLK-LPRF----- 241

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +  +    ELR +A  GL        + KG  +++Y+ RLD EL+VI  M F  YFL+V
Sbjct: 242 -NPARPAVEELRERAELGL--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVV 292

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            D +++ + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DI
Sbjct: 293 WDLLRFGRSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDI 352

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           D     R + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I 
Sbjct: 353 DIPDIYRPDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKIS 412

Query: 481 N----DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                  A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D
Sbjct: 413 FRDNLKSAYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISD 465

Query: 537 RPLSQLVPM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
           + L+  +P+ Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+
Sbjct: 466 QDLTNYIPLKYGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGI 522

Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            + +  I  +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG 
Sbjct: 523 HLKIEEIDLEDKETLDLFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGA 582

Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            D I  +  RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LR
Sbjct: 583 SDYINNFVARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILR 642

Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           RAMGKK    M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++
Sbjct: 643 RAMGKKDASAMHEMRVSFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAF 702

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
           Q A+ KTHYP  F    + L   N +    +  DA +   ++   S+NT     K+ +  
Sbjct: 703 QLAYFKTHYPAIFY--QVMLNSSNSD----YLIDALEAGFEVASLSINTIPYHDKIANKA 756

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
           IY  L +IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F
Sbjct: 757 IYLGLKSIKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSF 813

Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRF 952
             +R ++  +L N+ +                F  E G+ F D I + ++        +F
Sbjct: 814 EKNRQKVFNNLANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKF 857

Query: 953 ENEQRVLGFYFSGHPL 968
             EQ +LG   S HPL
Sbjct: 858 YMEQELLGIGVSKHPL 873


>gi|148988324|ref|ZP_01819771.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP6-BS73]
 gi|148993709|ref|ZP_01823156.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP9-BS68]
 gi|168490330|ref|ZP_02714529.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP195]
 gi|147926005|gb|EDK77079.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP6-BS73]
 gi|147927789|gb|EDK78812.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP9-BS68]
 gi|183571329|gb|EDT91857.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP195]
 gi|332073225|gb|EGI83704.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae
           GA17570]
          Length = 1033

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 308/966 (31%), Positives = 497/966 (51%), Gaps = 115/966 (11%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLG 63

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQSVRI 131
            ++ + + D      QG        ++  L  ++ GYQ+L++L  ++M    QG+++  +
Sbjct: 64  LEMTVFVDD------QG-------VNLRFLALSSVGYQQLMKLSTAKM----QGEKTWSV 106

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              +L++I     +++            +F+  +  E          G   Y+ +     
Sbjct: 107 LSQYLEDIA----VIVP-----------YFDRVESLE---------LGCDYYIGV----- 137

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
              Y E+   +  +   LPL   N        D E   VL A+  +  +  ++ P  +  
Sbjct: 138 ---YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLRSRQ 188

Query: 252 HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               + S +  +F +  P+AL+N  ++    S+ L      LPRF      +  +    E
Sbjct: 189 DVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLK-LPRF------NPARPAVEE 241

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           LR +A  GL        + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 242 LRERAELGL--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGQSN 293

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294 GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DPAHP 486
           IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I        A+ 
Sbjct: 354 IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKSAYE 413

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM- 545
            +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+ 
Sbjct: 414 GNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLK 466

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
           Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +
Sbjct: 467 YGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLE 523

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  R
Sbjct: 524 DKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVAR 583

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           K+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ L+G+SL +AD+LRRAMGKK    
Sbjct: 584 KHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRLAGFSLGKADILRRAMGKKDASA 643

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP
Sbjct: 644 MHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYP 703

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             F    + L   N +    +  DA +   ++   S+NT     K+ +  IY  L +IKG
Sbjct: 704 AIFY--QVMLNSSNSD----YLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIKG 757

Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
           V    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +
Sbjct: 758 VSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNN 814

Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVLGFY 962
           L N+ +                F  E G+ F D I + ++        +F  EQ +LG  
Sbjct: 815 LANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELLGIG 858

Query: 963 FSGHPL 968
            S HPL
Sbjct: 859 VSKHPL 864


>gi|188524382|ref|ZP_03004409.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 12
            str. ATCC 33696]
 gi|195659745|gb|EDX53125.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 12
            str. ATCC 33696]
          Length = 969

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 274/777 (35%), Positives = 429/777 (55%), Gaps = 43/777 (5%)

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            +Y  N  E  S+FS +  AL+N  ++       LQV    LP  I     +        L
Sbjct: 176  NYFLNDHEAQSLFSTI--ALDNLNKVLNE----LQVEIHDLPINIPVYDKNNLTVSSEIL 229

Query: 312  RNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            +   ++GL+ RL    G + K Y      QRL +EL+VI+  +F  YFLIV DFI +AK 
Sbjct: 230  KQLCISGLKQRLNAHDGQVKKAY-----AQRLKYELDVISEKQFDDYFLIVYDFINYAKS 284

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D   ++RD+
Sbjct: 285  NGIIVGPGRGSAAGSLVAYCLYITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKRDQ 344

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI Y+  KYG++ VA I+TF  L+AK ALRDVGR L +    +D++CK I  D    + L
Sbjct: 345  VIEYLFEKYGNDHVAYIVTFQRLKAKMALRDVGRILGIDLKVIDKICKNIKTDYDEDIDL 404

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             AI   +  +E  +       L EIS+KL    R   THAAGI++ +  ++ ++P+   +
Sbjct: 405  -AIKKSATLKEMYVLHK---ELFEISKKLIHAPRQIGTHAAGIILSNSSITNIIPIQLGI 460

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
             +D P++Q++M+++E+ GLIK D LGLK LT++   L  + + +  K+DL  I ++D   
Sbjct: 461  -NDRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIYKTQNKKIDLFNIDYNDKFV 519

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            +  L    T GIFQLES GM++ L  ++P  IEDI  + +L+RPGP  NI  +  R+  +
Sbjct: 520  FQDLAKAKTNGIFQLESPGMKKVLLKVKPQNIEDISIVSALFRPGPQQNIKTFVERRFKR 579

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E+    +     +L+ T G+IIYQEQV+++ + ++ + ++ +D  RRA+ KK ++ + + 
Sbjct: 580  EEFSYWNEQTKKILEPTYGIIIYQEQVIELVKTIANFDIATSDNFRRAISKKDEKILMQL 639

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K+ FI+GA  N   + +   IFE +  FA YGFN SH+ AY+ ISY  A++K +YP+EFL
Sbjct: 640  KDDFINGALANNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYPLEFL 699

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVG 846
            +  ++    + EK+  +  +A+ FNI I  P +     DF + +++  I +    IKG G
Sbjct: 700  SVLLSHTSASKEKLLSYLDEAKDFNISIKGPDIQHFSNDFVIDNHKQIIRFGFKTIKGFG 759

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKK---LNRRVLESLVFAGALDCFGYSRMQLLQ 903
                + I  A  +     L D+ S +D+ K   ++ + +E L+  GA D F  +R+ LL 
Sbjct: 760  DELLKKIKLALENA---ELSDYISYIDALKKGNISLKNIEILIRIGAFDSFEINRLFLLN 816

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE-NEQRVLGFY 962
            +L+ I       EK   N H          +++ +++ +        RF+ +E + LG  
Sbjct: 817  NLEEI------FEKTGLNGHFFDLNLVGLDYANDMSINE--------RFQGDEIQYLGIN 862

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWV 1018
             S      Y   +    +K   ES   I  N  + + A V++  Q KT+KG+ I ++
Sbjct: 863  LSSLNYTNYTNEIDYSNLKYEIESFNEINTNYEVNIVAQVLNIVQSKTKKGNDIFYL 919



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 43/66 (65%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F++L VHS YSLL  ALS+++++     + QP + +TD NN++  +EF  KA A  + PI
Sbjct: 2  FINLNVHSYYSLLNSALSIDDLIQHALDNNQPYVCLTDLNNMYGCIEFYDKAKAHNLIPI 61

Query: 71 IGCQLD 76
          IG + +
Sbjct: 62 IGLEFE 67


>gi|168494319|ref|ZP_02718462.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575675|gb|EDT96203.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           CDC3059-06]
 gi|327389178|gb|EGE87523.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae
           GA04375]
          Length = 1033

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 308/969 (31%), Positives = 495/969 (51%), Gaps = 121/969 (12%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P+IG
Sbjct: 4   QLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLIG 63

Query: 73  CQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQS 128
            ++ +   D + NL+                 L  ++ GYQ+L++L  ++M    QG+++
Sbjct: 64  LEMTVFVDDQEVNLR----------------FLALSSVGYQQLMKLSTAKM----QGEKT 103

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +   +L++I     +++            +F+  +  E          G   Y+ +  
Sbjct: 104 WSVLSQYLEDIA----VIVP-----------YFDRVESLE---------LGCDYYIGV-- 137

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 Y E+   +  +   LPL   N        D E   VL A+  +  +  ++ P  
Sbjct: 138 ------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLR 185

Query: 249 TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           +      + S +  +F +  P+AL+N  ++    S+ L      LPRF      +  +  
Sbjct: 186 SRQDVFISASSLEKLFQECFPQALDNLEKLISGISYDLDTSLK-LPRF------NPARPA 238

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             ELR +A  GL        + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ 
Sbjct: 239 VEELRERAELGL--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFG 290

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R
Sbjct: 291 RSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYR 350

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DP 483
            + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I        
Sbjct: 351 PDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +
Sbjct: 411 AYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYI 463

Query: 544 PM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
           P+ Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I
Sbjct: 464 PLKYGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEI 520

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +
Sbjct: 521 DLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNF 580

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK 
Sbjct: 581 VARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKD 640

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KT
Sbjct: 641 ASAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKT 700

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           HYP  F    + L   N +    +  DA +   ++   S+NT     K+ +  IY  L +
Sbjct: 701 HYPAIFY--QVMLNSSNSD----YLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKS 754

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++
Sbjct: 755 IKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKV 811

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVL 959
             +L N+ +                F  E G+ F D I + ++        +F  EQ +L
Sbjct: 812 FNNLANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELL 855

Query: 960 GFYFSGHPL 968
           G   S HPL
Sbjct: 856 GIGVSKHPL 864


>gi|194397529|ref|YP_002037532.1| DNA polymerase III DnaE [Streptococcus pneumoniae G54]
 gi|194357196|gb|ACF55644.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae G54]
          Length = 1033

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 308/969 (31%), Positives = 495/969 (51%), Gaps = 121/969 (12%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLG 63

Query: 73  CQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQS 128
            ++ +   D + NL+                 L  ++ GYQ+L++L  ++M    QG+++
Sbjct: 64  LEMTVFVDDQEVNLR----------------FLALSSVGYQQLMKLSTAKM----QGEKT 103

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +   +L++I     +++            +F+  +  E          G   Y+ +  
Sbjct: 104 WSVLSQYLEDIA----VIVP-----------YFDRVESLE---------LGCDYYIGV-- 137

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 Y E+   +  +   LPL   N        D E   VL A+  +  +  ++ P  
Sbjct: 138 ------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLR 185

Query: 249 TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           +      + S +  +F +  P+AL+N  ++    S+ L      LPRF      +  +  
Sbjct: 186 SRQDVFISASFLEKLFQERFPQALDNLEKLISGISYDLDTSLK-LPRF------NPARPA 238

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             ELR +A  GL        + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ 
Sbjct: 239 VEELRERAELGL--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFG 290

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R
Sbjct: 291 RSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYR 350

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DP 483
            + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I        
Sbjct: 351 PDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +
Sbjct: 411 AYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYI 463

Query: 544 PM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
           P+ Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I
Sbjct: 464 PLKYGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEI 520

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +
Sbjct: 521 DLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNF 580

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK 
Sbjct: 581 VARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKD 640

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KT
Sbjct: 641 ASAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKT 700

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           HYP  F    + L   N +    +  DA +   ++ P S+NT     K+ +  IY  L +
Sbjct: 701 HYPAIFY--QIMLNSANSD----YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKS 754

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           IKGV    A  I+E    +P+ ++EDF +++    L   +LE LV  G  D F  +R ++
Sbjct: 755 IKGVSNDLALWIIE---HRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKV 811

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVL 959
             +L N+ +                F  E G+ F D I + ++        +F  EQ +L
Sbjct: 812 FNNLANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELL 855

Query: 960 GFYFSGHPL 968
           G   S HPL
Sbjct: 856 GIGVSKHPL 864


>gi|221231672|ref|YP_002510824.1| DNA polymerase III alpha subunit [Streptococcus pneumoniae ATCC
           700669]
 gi|220674132|emb|CAR68651.1| DNA polymerase III alpha subunit [Streptococcus pneumoniae ATCC
           700669]
          Length = 1033

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 308/969 (31%), Positives = 495/969 (51%), Gaps = 121/969 (12%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLG 63

Query: 73  CQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQS 128
            ++ +   D + NL+                 L  ++ GYQ+L++L  ++M    QG ++
Sbjct: 64  LEMIVFVDDQEVNLR----------------FLALSSVGYQQLMKLSTAKM----QGVKT 103

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +   +L++I     +++            +F+  +  E          G   Y+ +  
Sbjct: 104 WSVLSQYLEDIA----VIVP-----------YFDRVESLE---------LGCDYYIGV-- 137

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 Y E+   +  +   LPL   N        D E   VL A+  +  +  ++ P  
Sbjct: 138 ------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLR 185

Query: 249 TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           +      + S +  +F +  P+AL+N  ++    S+ L      LPRF      +  +  
Sbjct: 186 SRQDVFISASSLEKLFQECFPQALDNLEKLISGISYDLDTSLK-LPRF------NPARPA 238

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             ELR +A  GL        + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ 
Sbjct: 239 VEELRERAELGL--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFG 290

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R
Sbjct: 291 RSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYR 350

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DP 483
            + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I        
Sbjct: 351 PDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +
Sbjct: 411 AYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYI 463

Query: 544 PM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
           P+ Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I
Sbjct: 464 PLKYGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEI 520

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +
Sbjct: 521 DLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNF 580

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK 
Sbjct: 581 VARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKD 640

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KT
Sbjct: 641 ASAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKT 700

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           HYP  F    + L   N +    +  DA +   ++ P S+NT     K+ +  IY  L +
Sbjct: 701 HYPAIFY--QIMLNSANSD----YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKS 754

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++
Sbjct: 755 IKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKV 811

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVL 959
             +L N+ +                F  E G+ F D I + ++        +F  EQ +L
Sbjct: 812 FNNLANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELL 855

Query: 960 GFYFSGHPL 968
           G   S HPL
Sbjct: 856 GIGVSKHPL 864


>gi|24379620|ref|NP_721575.1| DNA polymerase III DnaE [Streptococcus mutans UA159]
 gi|24377571|gb|AAN58881.1|AE014956_2 DNA polymerase III, alpha chain [Streptococcus mutans UA159]
          Length = 1034

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 308/1030 (29%), Positives = 512/1030 (49%), Gaps = 112/1030 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L + + K        I I D +NL+ A  F ++A    + PI
Sbjct: 2    FAQLDTKTVYSFMDSLIDLKSYIKKAKEMGYSHIGIMDGDNLYGAFHFIKEAQKEKLVPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +LD+ + D+L              ++  +     GY  L+++ +        K + +
Sbjct: 62   LGLELDLFLSDDL-------------TTVCFIAQNTIGYHNLLKIST-------AKMTGQ 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               S ++E   +GL ++     G     F F+                    Y+ +++  
Sbjct: 102  QLFSDIEEF-MDGLAIIVPYFEGIDQMDFPFS-------------------FYIGVRK-- 139

Query: 191  GYDRYRESQVVQLAYTHE-LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                       QL +  + LPL   +   +   +D E   +L A+  +  +  ++ P V+
Sbjct: 140  --------DTPQLDFKRDILPL---HTVRYYDNDDTETLQILHAIRDN--LPLREVPPVS 186

Query: 250  PDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D YL ++ EM  IF +  P++L N  ++    S+        LPRF             
Sbjct: 187  KDQYLFSQEEMEQIFEERFPQSLLNLEKLVANVSYQFDTDLK-LPRFS------------ 233

Query: 309  NELRNK-AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               R+K AV  L+    +G + K   + DY++RL  EL VI +M F  YFLIV D +++ 
Sbjct: 234  ---RDKPAVVELKELAQKGLVEKKLLSDDYQKRLSDELAVIHQMGFDDYFLIVWDLLRFG 290

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +  +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R
Sbjct: 291  RSQHYYMGMGRGSAAGSLVAYALDITGIDPVKNDLLFERFLNEERYSMPDIDIDLPDIYR 350

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAHP 486
             + + YV+++YG    AQI+TF +  A+ A+RDV +       ++ ++ K I   D    
Sbjct: 351  SQFLNYVRDRYGSTHSAQIVTFSTFGARQAIRDVFKRFGATEYELSQITKKISFRDNLTS 410

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            V  + IA    FR+   +     R  EI++K+EG  R  S HAAGIV+ D  L+  +P+ 
Sbjct: 411  VYDKKIA----FRQLINSKIEYQRAFEIAKKIEGNPRQTSIHAAGIVMSDDNLTDHIPL- 465

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                 ++ +TQ++   +E  GL+K DFLGL+ LT +QK  + +AQ  G  +D+  I  +D
Sbjct: 466  -KTGEEMMITQYDAPAVEANGLLKMDFLGLRNLTFIQKMQEKVAQDYGHAIDIRAIDLED 524

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             ET  L     T GIFQ E++G    L+ ++P   E+++A  SL RPG  D    +  RK
Sbjct: 525  KETLALFAAGDTKGIFQFEAAGAINLLKRIKPSRFEEVVATTSLNRPGASDYTENFIRRK 584

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G+E++  I   I  +LK T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM
Sbjct: 585  YGQEEVDLIDSSIASILKSTYGIMLYQEQVMQIAQIFAGFTLGKADLLRRAMSKKNTVEM 644

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             K ++ F+ GA + G    +A N+F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP 
Sbjct: 645  QKMEKDFLQGADQLGRDLKVAQNLFARMAKFAGYGFNRSHAYAYSALAFQMAYFKVHYPA 704

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F    +     +      +  +A + + ++ P S+NT     K+   +IY  L  IKG+
Sbjct: 705  VFFDVMLNYSSGD------YLSNALETHFKLGPLSINTIPYSDKISHGQIYLGLKNIKGL 758

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                A  I+    ++PF S+EDF  R+  K     ++  L+  G  D F  +R +++ +L
Sbjct: 759  NRDFAYWII---GNRPFSSIEDFLIRIPEKYQKTEIITPLIQVGLFDQFDKNRQKIVVNL 815

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +++  +         N+  ++FA     +     +E     N+  +++ EQ ++G   S 
Sbjct: 816  EHLFTF--------VNELGSLFADSSYNW-----IEAQDYTNAE-KYQLEQDIIGAGVSP 861

Query: 966  HPL-DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEP 1023
            HPL ++ K   R +           + GN   + A + S +  +T+ +G ++ +++ ++ 
Sbjct: 862  HPLIEIAKHSSRHLI-----ALTDLVEGNEATILAQIESIRIIRTKSRGEQMAFLSVTDT 916

Query: 1024 AKEYEANFFP 1033
             K+     FP
Sbjct: 917  KKKLNITLFP 926


>gi|171920935|ref|ZP_02932081.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 13
            str. ATCC 33698]
 gi|171903166|gb|EDT49455.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 13
            str. ATCC 33698]
          Length = 969

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 274/777 (35%), Positives = 429/777 (55%), Gaps = 43/777 (5%)

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            +Y  N  E  S+FS +  AL+N  ++       LQV    LP  I     +        L
Sbjct: 176  NYFLNDHEAQSLFSTI--ALDNLNKVLNE----LQVEIHDLPINIPVYDKNNLTVSSEIL 229

Query: 312  RNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            +   ++GL+ RL    G + K Y      +RL +EL+VI+  +F  YFLIV DFI +AK 
Sbjct: 230  KQLCISGLKQRLNAHDGQVKKVY-----AKRLKYELDVISEKQFDDYFLIVYDFINYAKS 284

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D   ++RD+
Sbjct: 285  NGIIVGPGRGSAAGSLVAYCLYITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKRDQ 344

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI Y+  KYG++ VA I+TF  L+AK ALRDVGR L +    +D++CK I  D    + L
Sbjct: 345  VIEYLFEKYGNDHVAYIVTFQRLKAKMALRDVGRILGIDLKVIDKICKNIKTDYDEDIDL 404

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             AI   +  +E  +       L EIS+KL    R   THAAGI++ +  ++ ++P+   +
Sbjct: 405  -AIKKSATLKEMYVLHK---ELFEISKKLIHAPRQIGTHAAGIILSNSSITNIIPIQLGI 460

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
             +D P++Q++M+++E+ GLIK D LGLK LT++   L  + + +  K+DL  I ++D   
Sbjct: 461  -NDRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIYKTQNKKIDLFNIDYNDKFV 519

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            +  L    T GIFQLES GM++ L  ++P  IEDI  + +L+RPGP  NI  +  R+  +
Sbjct: 520  FQDLAKAKTNGIFQLESPGMKKVLLKVKPQNIEDISIVSALFRPGPQQNIKTFVERRFKR 579

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E+    +     +L+ T G+IIYQEQV+++ + ++ + ++ +D  RRA+ KK ++ + + 
Sbjct: 580  EEFSYWNEQTKKILEPTYGIIIYQEQVIELVKTIANFDIATSDNFRRAISKKDEKILMQL 639

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K+ FI+GA  N   + +   IFE +  FA YGFN SH+ AY+ ISY  A++K +YP+EFL
Sbjct: 640  KDDFINGALANNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYPLEFL 699

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVG 846
            +  ++    + EK+  +  +A+ FNI I  P +     DF + +++  I +    IKG G
Sbjct: 700  SVLLSHTSASKEKLLSYLDEAKDFNISIKGPDIQHFSNDFVIDNHKQIIRFGFKTIKGFG 759

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKK---LNRRVLESLVFAGALDCFGYSRMQLLQ 903
                + I  A  +     L D+ S +D+ K   ++ + +E L+  GA D F  +R+ LL 
Sbjct: 760  DELLKKIKLALENA---ELSDYISYIDALKKGNISLKNIEILIRIGAFDSFEINRLFLLN 816

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL-EKFSVENSSVRFENEQRVLGFY 962
            +L+ I       EK   N H          +++ +++ E+F         E+E + LG  
Sbjct: 817  NLEEI------FEKTGLNGHFFDLNLVGLDYANDMSINERFQ--------EDEIQYLGIN 862

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWV 1018
             S      Y   +    +K   ES   I  N  + + A V++  Q KT+KG+ I ++
Sbjct: 863  LSSLNYTNYTNEIDYSNLKYEIESFNEINTNYEVNIVAQVLNIVQSKTKKGNDIFYL 919



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 43/66 (65%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F++L VHS YSLL  ALS+++++     + QP + +TD NN++  +EF  KA A  + PI
Sbjct: 2  FINLNVHSYYSLLNSALSIDDLIQHALDNNQPYVCLTDLNNMYGCIEFYDKAKAHNLIPI 61

Query: 71 IGCQLD 76
          IG + +
Sbjct: 62 IGLEFE 67


>gi|116516844|ref|YP_816273.1| DNA polymerase III DnaE [Streptococcus pneumoniae D39]
 gi|116077420|gb|ABJ55140.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae D39]
          Length = 1033

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 307/969 (31%), Positives = 495/969 (51%), Gaps = 121/969 (12%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLG 63

Query: 73  CQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQS 128
            ++ +   D + NL+                 L  ++ GYQ+L++L  ++M    QG+++
Sbjct: 64  LEMTVFVDDQEVNLR----------------FLALSSVGYQQLMKLSTAKM----QGEKT 103

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +   +L++I     +++            +F+  +  E          G   Y+ +  
Sbjct: 104 WSVLSQYLEDIA----VIVP-----------YFDRVESLE---------LGCDYYIGV-- 137

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 Y E+   +  +   LPL   N        D E   VL A+  +  +  ++ P  
Sbjct: 138 ------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLR 185

Query: 249 TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           +      + S +  +F +  P+AL+N  ++    S+ L      LPRF      +  +  
Sbjct: 186 SRQDVFISASSLEKLFQECFPQALDNLEKLISGISYDLDTSLK-LPRF------NPARPA 238

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             ELR +A  GL        + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ 
Sbjct: 239 VEELRERAELGL--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFG 290

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R
Sbjct: 291 RSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYR 350

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DP 483
            + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I        
Sbjct: 351 PDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +
Sbjct: 411 AYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYI 463

Query: 544 PM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
           P+ Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I
Sbjct: 464 PLKYGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEI 520

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +
Sbjct: 521 DLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNF 580

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK 
Sbjct: 581 VARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKD 640

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KT
Sbjct: 641 ASAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKT 700

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           HYP  F    + L   N +    +  DA +   ++   S+NT     K+ +  IY  L +
Sbjct: 701 HYPAIFY--QVMLNSSNSD----YLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKS 754

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++
Sbjct: 755 IKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKV 811

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVL 959
             +L N+ +                F  E G+ F D I + ++        +F  EQ +L
Sbjct: 812 FNNLANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELL 855

Query: 960 GFYFSGHPL 968
           G   S HPL
Sbjct: 856 GIGVSKHPL 864


>gi|225861211|ref|YP_002742720.1| DNA polymerase III DnaE [Streptococcus pneumoniae Taiwan19F-14]
 gi|298254248|ref|ZP_06977834.1| DNA polymerase III DnaE [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|225728112|gb|ACO23963.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           Taiwan19F-14]
          Length = 1033

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 307/969 (31%), Positives = 495/969 (51%), Gaps = 121/969 (12%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLG 63

Query: 73  CQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQS 128
            ++ +   D + NL+                 L  ++ GYQ+L++L  ++M    QG+++
Sbjct: 64  LEMTVFVDDQEVNLR----------------FLALSSVGYQQLMKLSTAKM----QGEKT 103

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +   +L++I     +++            +F+  +  E          G   Y+ +  
Sbjct: 104 WSVLSQYLEDIA----VIVP-----------YFDRVESLE---------LGCDYYIGV-- 137

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 Y E+   +  +   LPL   N        D E   VL A+  +  +  ++ P  
Sbjct: 138 ------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLR 185

Query: 249 TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           +      + S +  +F +  P+AL+N  ++    S+ L      LPRF      +  +  
Sbjct: 186 SRQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLK-LPRF------NPARPA 238

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             ELR +A  GL        + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ 
Sbjct: 239 VEELRERAELGL--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFG 290

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R
Sbjct: 291 RSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYR 350

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DP 483
            + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I        
Sbjct: 351 PDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +
Sbjct: 411 AYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYI 463

Query: 544 PM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
           P+ Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I
Sbjct: 464 PLKYGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEI 520

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +
Sbjct: 521 DLEDKETLDLFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNF 580

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK 
Sbjct: 581 VARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKD 640

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KT
Sbjct: 641 ASAMHEMRVSFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKT 700

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           HYP  F    + L   N +    +  DA +   ++   S+NT     K+ +  IY  L +
Sbjct: 701 HYPAIFY--QVMLNSSNSD----YLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKS 754

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++
Sbjct: 755 IKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKV 811

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVL 959
             +L N+ +                F  E G+ F D I + ++        +F  EQ +L
Sbjct: 812 FNNLANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELL 855

Query: 960 GFYFSGHPL 968
           G   S HPL
Sbjct: 856 GIGVSKHPL 864


>gi|307706663|ref|ZP_07643470.1| DNA polymerase III subunit alpha [Streptococcus mitis SK321]
 gi|307618118|gb|EFN97278.1| DNA polymerase III subunit alpha [Streptococcus mitis SK321]
          Length = 1033

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 308/964 (31%), Positives = 502/964 (52%), Gaps = 111/964 (11%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQ-QPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            L   + YS +E  +S++  + ++A D     +A+ D +NL+ A +F +     GI P++
Sbjct: 4   QLDTKTVYSFMESVISIDKYV-RVAKDYGYTHLAMMDIDNLYGAFDFLEVTKKYGIHPLL 62

Query: 72  GCQLDIDMQD---NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQ 127
           G ++++ + D   NL+                 L  ++ GYQ+L++L  ++M    QG++
Sbjct: 63  GLEMNVLVDDKDVNLR----------------FLALSSVGYQQLMKLSTAKM----QGEK 102

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
           S  +   +L++I               +   +F       E  LL      G   Y+ + 
Sbjct: 103 SWSVLSQYLEDI--------------TVIVPYF------EELELLNL----GCDYYIGV- 137

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                  Y E+   +  +   LPL   N       +D E   VL A+  +  +  ++ P 
Sbjct: 138 -------YPETLASEFHHPI-LPLYRVNT---FESKDREVLQVLTAIKEN--IPLREVPL 184

Query: 248 VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +      + S +  +F +  P+ LEN  ++    S+ L      LPRF      +  + 
Sbjct: 185 RSRQDVFISASSLEKLFQERFPQTLENLEKLISGISYDLDTSLK-LPRF------NPARP 237

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              ELR +A    E+ LAQ  +     +++Y+ RLD EL VI  M F  YFL+V D +++
Sbjct: 238 AVEELRERA----ELGLAQKELT----SKEYQDRLDQELAVIHDMGFDDYFLVVWDLLRF 289

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     
Sbjct: 290 GRSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIY 349

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I    +  
Sbjct: 350 RPDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKI----SFR 405

Query: 487 VSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            +LQ A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+
Sbjct: 406 DNLQSAYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL 465

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
                 ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +
Sbjct: 466 KHG--DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHIKIEEIDLE 523

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  R
Sbjct: 524 DKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVAR 583

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           K+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    
Sbjct: 584 KHGQEEVTVLAPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASA 643

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ K HYP
Sbjct: 644 MHEMRASFIQGSIEAGHTAEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKMHYP 703

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             F    + L   N +    +  DA +   ++ P S+NT     K+ +  IY  L +IKG
Sbjct: 704 AIFY--QVMLNSANSD----YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKG 757

Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
           V    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +
Sbjct: 758 VSKDLALWILE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNN 814

Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
           L N+ ++ + +         ++F     ++ D    E +S +    +F  EQ +LG   S
Sbjct: 815 LVNLFEFVKVL--------GSLFGETIYSWQDS---EDWSEQE---KFYMEQELLGVGVS 860

Query: 965 GHPL 968
            HPL
Sbjct: 861 KHPL 864


>gi|240173286|ref|ZP_04751944.1| error-prone DNA polymerase [Mycobacterium kansasii ATCC 12478]
          Length = 1100

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 284/909 (31%), Positives = 461/909 (50%), Gaps = 49/909 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +  S ++  L  H++YS L+GA +   ++++ A     A+A+TD N L+ A+ F++ A  
Sbjct: 57  VRSSAAYAELHAHTAYSFLDGASTPEELVEEAARLDLCALALTDHNGLYGAVRFAEAAAE 116

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             ++ + G +L      +L    + + P P  P +++L    EGY+RL   ++  +L   
Sbjct: 117 LDMRTVFGAEL------SLGSEARTEQPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGG 170

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183
            K   R     L E       +LTG   G + +A        A++ L      FG  R+ 
Sbjct: 171 EKGKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSEGGPDAAQRALADLVDRFGAYRVS 230

Query: 184 VNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVS 241
           + L  H    D  R + +  LA    + +VAT  + F           + A+ A  ++ S
Sbjct: 231 IELTHHGHPLDDERNATLAGLAPRFGVGVVATTGAHFAHPSRSRLAMAMGAIRARQSLDS 290

Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                      +L++  EM  +F+  PEA+    E+  +C+F L + AP LP F      
Sbjct: 291 AAGWLAPLGGSHLRSGDEMARMFAWRPEAVTAAAELGGQCAFELALIAPQLPPF------ 344

Query: 302 DIQ--KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
           D+     E++ LR   +AG   R      A   +AQ     +  EL VIA++KF GYFL+
Sbjct: 345 DVPGGHTEDSWLRQLVMAGARHRYGPPDGAPRAYAQ-----IGHELKVIAQLKFPGYFLV 399

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V D  Q+ ++NNI +  GRGS A S   YAL IT +DP+   LLFERFL+P R   PD D
Sbjct: 400 VHDITQFCRRNNI-LCQGRGSAANSAVCYALGITAVDPVANELLFERFLSPARDGPPDID 458

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           ID   DRR++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K I
Sbjct: 459 IDIESDRREKVIQYVYDKYGRDYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQI 518

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            +       +  I                +++++++ ++  L RH   H+ G+VI DRP+
Sbjct: 519 SHWNGQAAEVDGIP---------------EQVVDLATQIRNLPRHMGIHSGGMVICDRPI 563

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
           + + P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+ +G++VDL
Sbjct: 564 ADVCPVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAMDLVAEHKGLEVDL 623

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
           + +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   
Sbjct: 624 AKLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLRPRVFYDLVVEVALIRPGPIQGG 683

Query: 659 VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            V  Y  R+NG + +V  HP + P L++T GV ++QEQ+MQ+A   +G++ +EAD LRRA
Sbjct: 684 SVHPYIRRRNGIDPVVYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFTAAEADQLRRA 743

Query: 717 MG-KKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           MG K+  E M + + RF  G  + +G    +   I+E L  FA++GF +SHA ++A + +
Sbjct: 744 MGSKRSTERMQRLRGRFYDGMRALHGTRDEVIDRIYEKLEAFANFGFPESHALSFASLVF 803

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN- 833
            +AW K H+P  F AA +  +       +    DAR+  + +  P VN       + +  
Sbjct: 804 YSAWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVVVHGPDVNASLAHATLENAG 863

Query: 834 -RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             +   L A++ +G   A  ++ E +A+ PF SL D  SRV   +L+    E+L  AGAL
Sbjct: 864 MEVRLGLGAVRHIGDDLAEKLVGERNANGPFASLLDLASRV---QLSVPQTEALATAGAL 920

Query: 892 DCFGYSRMQ 900
            CFG SR +
Sbjct: 921 GCFGMSRRE 929


>gi|312867739|ref|ZP_07727945.1| DNA polymerase III, alpha subunit [Streptococcus parasanguinis F0405]
 gi|311096802|gb|EFQ55040.1| DNA polymerase III, alpha subunit [Streptococcus parasanguinis F0405]
          Length = 1033

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 304/1026 (29%), Positives = 520/1026 (50%), Gaps = 109/1026 (10%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             L   S Y+ +E  +++ + +    +    A+ I D +NL+ A EF +   A  ++P++G
Sbjct: 4    QLDTKSVYTFMESLVTIKDYVHVAKSMGYDALGIMDVDNLYGAYEFIEACQAHNLRPLVG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             ++ +++ +             T+P   ++  T +GYQ L+++ +   +     + V+  
Sbjct: 64   LEIGLEVDNE------------TIP-FRMMALTTKGYQNLMKMSTVKMMGKNNWEDVKHL 110

Query: 133  LSWLQEIGTEGLIMLTGG--SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                    TEG+ ++     +SG +     +     A+  +  F  L             
Sbjct: 111  --------TEGVAVIVPAPFASGDLPLGLDYFIGVFADTPVQEFSHLV------------ 150

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                              LPL   +   F    D EA  +L A+  +  +++     + P
Sbjct: 151  ------------------LPL---HTVRFFEAGDVEAMQMLAAIKDNQSLTETGP--IDP 187

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               LK   ++ + F++  P+A+ N  ++ +   + +      LPRF      + QK    
Sbjct: 188  TTVLKTPQDLKNDFAERFPQAITNLEKLVQGIQYDIDTQLK-LPRF------NPQKPAVE 240

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ELR  A AGL        + K   +  Y++RL+ EL++I +M F  YFLIV D +++ + 
Sbjct: 241  ELRKLAQAGL--------LRKNLTSPVYQERLEHELDIIHQMGFDDYFLIVWDLLRFGRS 292

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS  GS+ AYAL IT IDP+  +LLFERFLN +R +MPD DID     R E
Sbjct: 293  QGYYMGMGRGSAVGSLVAYALGITGIDPVEKNLLFERFLNVERYTMPDIDIDIPDIYRPE 352

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAHPVS 488
             IRYV+++YG    AQI+TF +  AK A+RDV +   +P  ++  + K I   D      
Sbjct: 353  FIRYVRDRYGSYHAAQIVTFSTFGAKQAIRDVFKRFGVPEYELTSITKRIGYRDTLTTAY 412

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             Q +A    FR+   +    +R  EI++++EG  R  S HAAG+V+ D+ L+  +P+   
Sbjct: 413  EQNLA----FRQVIHSRAEFERGFEIAKRIEGQPRQTSIHAAGVVMSDQDLTDHIPL--K 466

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHE 607
               D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + + ++   ++ +  I  +D E
Sbjct: 467  YGEDMFVTQYDAHAVEANGLLKMDFLGLRNLTFVQKMKEAVYEKYQEEIVIEAIDLEDPE 526

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T GIFQ E +G  + L  ++P+  E+++A  SL RPG  D I  +  RK+G
Sbjct: 527  TLALFAAGDTKGIFQFEQAGAIRLLRRVRPNHFEEVVATTSLNRPGASDYIDNFVKRKHG 586

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +EK+  + P I+ +L+ T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK   EM K
Sbjct: 587  QEKVEILDPAIEEILRPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKNAAEMHK 646

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             ++ F++GA K G ++  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F
Sbjct: 647  MEDDFVAGALKLGHTEEKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQMAYFKVHYPDVF 706

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
                +     +      +  DA QF+ ++ P S+NT     K  D +IY  +  IKG+  
Sbjct: 707  FDVMLNYSSSD------YLADALQFDFKVAPLSINTIPYRDKFQDRKIYLGMKNIKGLPR 760

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A  I++   ++PF+S+EDF  R+ ++     +L  LV  G  D F  +R ++L +L N
Sbjct: 761  DLAYWIID---NRPFESVEDFILRLPNQYHKLPLLTPLVELGLFDIFEKNRRKVLHNLPN 817

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  +A        ++  ++F +   ++++    E FS    + ++E E+ ++G   S HP
Sbjct: 818  LFVFA--------DELGSLFGNSNYSWTEA---EDFS---QAEKYEKEEAIIGIGLSTHP 863

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L      + +      +     ++G   R+   V + +  +T+ G  + ++  S+  K+ 
Sbjct: 864  LVA----IGQTSPYEIQPISQLVQGEQARILIEVQNIRTIRTKSGDLMAFLQVSDTKKKL 919

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 920  DVTLFP 925


>gi|325675561|ref|ZP_08155245.1| error-prone DNA polymerase [Rhodococcus equi ATCC 33707]
 gi|325553532|gb|EGD23210.1| error-prone DNA polymerase [Rhodococcus equi ATCC 33707]
          Length = 1115

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 283/904 (31%), Positives = 456/904 (50%), Gaps = 46/904 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS++S L+GA     ++++       AIA+TD + ++  + F++ A   G++ +
Sbjct: 81  YAELHTHSAFSFLDGASPPEELVEEAVRLGLDAIALTDHDGMYGVVRFAEAAKELGMRTV 140

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L +D       T +  TP P    +++L    EGY+RL   ++  +L    K   R
Sbjct: 141 FGAELSLDA------TPRTGTPDPGGTHLLVLARGQEGYRRLSRQIAAAHLAGGEKGKPR 194

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                L E       +LTG   G +  A        AE  L      FG DR+ V L  H
Sbjct: 195 YDYDALTEAAGGHWQILTGCRKGHVRSALAAGGPDAAEAALRDLVDRFGADRVTVELT-H 253

Query: 190 RGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           RG     E  + + ++A   +LP++A+  + F           + AV     + +     
Sbjct: 254 RGLPEDDEINAALAEIATRQQLPVIASTAAHFAGPHRRRLAMAMAAVRARQSLDEAAGWL 313

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             T   +L++ +EMV +F+  PEA+     +   C+F L++ AP LP F   +       
Sbjct: 314 APTGGAHLRSGAEMVRLFAQCPEAVAGAAALGLECAFDLRLIAPKLPPFDVPD----GHT 369

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
           E + LR   + G   R    +     +AQ     ++ EL++I R+ F GYFL+V D + +
Sbjct: 370 EASWLRELTMQGARRRYGPPSANPAAYAQ-----IEHELDIIERLTFPGYFLVVHDIVSF 424

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            K N+I +  GRGS A S   YA+ IT++DP+R  LLFERFL+P+R   PD D+D   DR
Sbjct: 425 CKGNDI-LCQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLSPERDGPPDIDVDIESDR 483

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+E I++V  KYG E  AQ+    + + K+++RD+ RAL     Q D   K +       
Sbjct: 484 REEAIQHVYTKYGREYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSKQVSRWTG-- 541

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           V  +   D           P+V   LE++ ++EG  RH   H+ G+VI DRP++ + P+ 
Sbjct: 542 VGQETDTD---------IPPAV---LELAAQIEGFPRHLGIHSGGMVICDRPIADVCPVE 589

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +  V Q++       GL+KFD LGL  L+ L   +D +A+ +G++VDL+ +   +
Sbjct: 590 WARMENRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYMIDLVAEHKGIEVDLAQLDLSE 649

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
              Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  Y  
Sbjct: 650 QAVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVHPYIR 709

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIK 722
           R+NG+E +V  HP ++  L  T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG K+  
Sbjct: 710 RRNGREPVVYDHPCLEKALARTLGVPLFQEQLMQMAVDAAGFSAAEADQLRRAMGSKRSP 769

Query: 723 EEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
           E+M++ + R   G  + +GI+  +A  I+E L  FA++GF +SH+ ++A + + ++W K 
Sbjct: 770 EKMERLRGRLYDGMRELHGITGDVADRIYEKLHAFANFGFPESHSQSFASLVFYSSWFKL 829

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC--VDFKVGDNRIYYSL 839
           H+P  F A  +  +       +    DAR+  +++    VN        +     +   L
Sbjct: 830 HHPAAFCAGLLRAQPMGFYSPQSLVADARRHGVRVHGADVNASLAHATLEACGTEVRLGL 889

Query: 840 AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             ++G+G   A  I+ A A D PF S+ D   R+D   L    +ESL  AGAL CFG SR
Sbjct: 890 GEVRGIGDALADRIVAARAEDGPFRSILDLTGRID---LTTGQVESLATAGALSCFGLSR 946

Query: 899 MQLL 902
            + L
Sbjct: 947 REAL 950


>gi|189184300|ref|YP_001938085.1| DNA polymerase III alpha chain [Orientia tsutsugamushi str. Ikeda]
 gi|189181071|dbj|BAG40851.1| DNA polymerase III alpha chain [Orientia tsutsugamushi str. Ikeda]
          Length = 1234

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/541 (41%), Positives = 351/541 (64%), Gaps = 21/541 (3%)

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
            R+A++ D     +++ + +LEGL+RH S HAAGIVIG + L   + +Y+D  SD+PV Q+
Sbjct: 591  RKAQIQD-----VIKTALELEGLHRHVSVHAAGIVIGRQNLIDTIALYKDKNSDIPVVQY 645

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
            +MK++E AGLIKFDFLGL+TLT++ K L+ L  + +  +++ + F+D  TY LL+   T+
Sbjct: 646  SMKYLEAAGLIKFDFLGLQTLTIISKCLELLKNKNINFEINNLEFNDKLTYQLLSNGNTI 705

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G+FQ ESSGM+ AL+ ++PDCIED+IAL +LYRPGP+DN+  Y + K+G+ +   +H  +
Sbjct: 706  GVFQFESSGMQDALKRLKPDCIEDLIALGALYRPGPMDNLRTYIDCKHGRLQPNYLHSKL 765

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +P+LKET G IIYQEQVM+IA++L+ Y+LS+AD LR+AM KKIK EM+ QK  FI+GA +
Sbjct: 766  EPILKETYGTIIYQEQVMEIARVLAKYTLSKADFLRQAMAKKIKSEMENQKVIFINGAIE 825

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NGISK  A +IF  + KFA YGFNKSHAA YAVISYQTA++K +YP EFL A + L++++
Sbjct: 826  NGISKNQAESIFAEVEKFAGYGFNKSHAAIYAVISYQTAYLKANYPTEFLVACLNLDIND 885

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS 857
             +KI  F Q+A+Q  I+++PP++N     F +  DN I ++L AIK V     + I+E  
Sbjct: 886  QDKIDLFIQEAKQLGIKVIPPNINKSKEYFSMSADNAIIFALGAIKNVTPNIGKIIVEER 945

Query: 858  ADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF--GYSRMQLLQSLDNIQKYAQW 914
              +  F ++ DF  R DS  ++R+V ESL++AG  D F    +R QL  S+D I  YA  
Sbjct: 946  LHRGEFKTILDFAVRADSYSISRKVFESLIYAGCFDDFQQQVNRHQLFASIDRINNYA-- 1003

Query: 915  VEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
               ++  KH + F+    T  D ++ + ++S+   +++   E  VLG + + +P+  Y+ 
Sbjct: 1004 ---SKQAKHIHQFSFITSTVEDVLSQISEYSLHEKAMK---EFEVLGSFLTCNPIAPYES 1057

Query: 974  ILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +L K G+   +    T++  +  +++A +V  K  + + +G +   +  S+     E   
Sbjct: 1058 LLAKHGVINSKYLSTTLKSGSTAVKIAGIVQKKNSRMSPRG-KFNIIKLSDSCGNSEVKI 1116

Query: 1032 F 1032
            F
Sbjct: 1117 F 1117



 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/496 (43%), Positives = 294/496 (59%), Gaps = 29/496 (5%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +  F+HL+V SSYSLLE  LS   IL      + PA+A+TD +NLF +LEF+  A   GI
Sbjct: 2   NAKFIHLRVQSSYSLLESTLSTQKILSLAQRYEMPAVALTDKSNLFGSLEFALAAAKEGI 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           Q I G  L+I           G+   P    I+L+     GYQ L++L S  Y+ +    
Sbjct: 62  QAIHGIILNIQYY--------GQNDSPKYSEILLIAQNKAGYQNLLKLASFPYIKNDRTT 113

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              + L  L     EG+I+L+G   G I    F  +  +AE     FK +FG+R Y  + 
Sbjct: 114 INHVTLDDLFTYN-EGIIVLSGYFYGIIGNLLFEKNFVLAENYAKKFKTIFGNRFYFEIN 172

Query: 188 RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
           R      Y  E   VQLA    +PLVATNN LF   E Y  H+VLM + +  +  + D+ 
Sbjct: 173 RITSKQIYAIEKSYVQLAQKLNIPLVATNNILFDEGEKYATHEVLMKICNPNI--EIDKF 230

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
           ++    Y K+++EM+  F DLP+A++NTV +A+R SF+L+   P+LP+F  K+ D     
Sbjct: 231 KINNQCYFKSQNEMIETFWDLPQAIKNTVYLAQRISFMLEAKKPLLPKF-AKDAD----- 284

Query: 307 EENEL-RNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARMKFSGYFL 358
           EEN+L R  +  GL  +L      K Y   +       Y  RL++EL+VI  M FSGYFL
Sbjct: 285 EENKLIRQLSEEGLSQKLKLQF--KNYSTAEFEDKKKIYFDRLNYELSVICSMNFSGYFL 342

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           IVADFI+W+K+NNI V P RGSGA SV A+ L IT++DP+RF LLFERFLNP+R+SMPDF
Sbjct: 343 IVADFIKWSKENNISVNP-RGSGAASVVAWGLGITNLDPIRFGLLFERFLNPERVSMPDF 401

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           DIDFCQ+RR EVI YV+ KYG  +V QIITFG LQAKA ++DV RAL + Y+  + +  L
Sbjct: 402 DIDFCQERRGEVINYVRRKYGEGKVGQIITFGKLQAKAVVKDVARALGLGYNYANYITSL 461

Query: 479 IPNDPAHPVSLQAIAD 494
           IP +   PV+LQ   D
Sbjct: 462 IPFNAVRPVTLQEAID 477


>gi|47459322|ref|YP_016184.1| DNA polymerase III DnaE [Mycoplasma mobile 163K]
 gi|47458652|gb|AAT27973.1| DNA polymerase III alpha subunit [Mycoplasma mobile 163K]
          Length = 982

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 246/661 (37%), Positives = 381/661 (57%), Gaps = 43/661 (6%)

Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
           I K    Q+ ++R+++ELNVI  +KF+ YFLI+ D +++AK+N I VGPGRGS AGS+ +
Sbjct: 240 IKKFEKYQNVKERINYELNVINSLKFADYFLIIYDIVKFAKENKISVGPGRGSAAGSIVS 299

Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
           Y L IT I+PL++ LLFERFLNP+R++MPD DIDF  DRRDE++ YV  KYGH++VA I 
Sbjct: 300 YLLNITSINPLKYDLLFERFLNPERITMPDIDIDFQDDRRDEIVEYVTKKYGHQKVALIT 359

Query: 448 TFGSLQAKAALRDVGRAL---QMPYSQVDRLCKLIPN-DPAHPVSLQAIADDSRFREARL 503
           TF    AK ALRDVGR L   Q+  + + +L KL  N D A+          ++F+   L
Sbjct: 360 TFQRFGAKMALRDVGRNLNFTQVDMNNISKLVKLNQNLDEAYRT--------TKFKAQML 411

Query: 504 ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563
           A P  + L + ++K+E   R   THAAGI+I ++ L +++P+ +   S++  TQ++M ++
Sbjct: 412 ASPKHELLYKNARKIENFPRQVGTHAAGIIISNKNLIEIIPIMQSSVSNIQ-TQYSMNYL 470

Query: 564 EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH-----------ETYHLL 612
           E   L+K D LGLK L+ + K ++   +   K+  +    D++           + + LL
Sbjct: 471 ENFSLLKIDLLGLKALSTI-KLIEQKIREAYKIKYNFSNEDEYTEQLKKDLDPKKAFQLL 529

Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
           +   T G+FQLES GM Q ++ ++     DI+ ++SLYRPGP+  I  Y + KN   KI 
Sbjct: 530 SDGNTAGVFQLESPGMIQTIKKVKISKFSDIVDVISLYRPGPMQYIQEYIDNKNDASKIK 589

Query: 673 SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
            +  L D ++ +T G+IIYQEQ+++I Q  +G S ++AD+LRRA+ KK  EE++K K+ F
Sbjct: 590 HVEKLYDEIVSKTHGIIIYQEQILEIVQKYAGLSYAKADILRRAISKKNSEEIEKFKDLF 649

Query: 733 ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
           IS + ++G S+ +A  IF  +  FA YGFNKSHA +YA  ++  A +K ++P+EF    +
Sbjct: 650 ISSSIQHGQSEKVANEIFSKIENFAQYGFNKSHAVSYATTTFYFAQLKANFPLEFYTVLI 709

Query: 793 TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--RIYYSLAAIKGVGTTTA 850
           +   D++E I K+  +A+     +  P +N    DFK   +  +I+  L  IKG+G    
Sbjct: 710 S-SSDSLETINKYVIEAKNNLYTVESPDINVS--DFKAFSDFEKIFLPLIMIKGLGKVAI 766

Query: 851 RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
           + I+ E + +  + S     +R++   + + +LE L+ + AL  FG S   LL +L    
Sbjct: 767 QKILDERNQNGKYSSFFTLVARLNFVGITKGILEKLILSNALRNFG-SMQTLLANLTQAY 825

Query: 910 KYAQWVEKNRTNKHENI---FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
            YA+ V     N  E I    + E     DK  L        S   +NE   LG  F+  
Sbjct: 826 AYAETVLFKDENGIEKINFGLSKEHTIVEDKRDL--------SFEAKNESEYLGMVFNAF 877

Query: 967 P 967
           P
Sbjct: 878 P 878



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 17/111 (15%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            ++L  +S YS+LE A+SL +++     +Q   +++TD N +F   EF +      I+PI
Sbjct: 4   LINLHTNSEYSILESAISLEHLISYAKHNQLKYLSLTDHNTMFGVPEFYELCKKNSIKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
           IG  LD+   +N ++              VL+    +GY  LI+L S+  L
Sbjct: 64  IGLDLDV---ENYRL--------------VLIAKNYQGYLELIKLSSKKML 97


>gi|209554072|ref|YP_002284852.1| DNA polymerase III DnaE [Ureaplasma urealyticum serovar 10 str. ATCC
            33699]
 gi|209541573|gb|ACI59802.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 10
            str. ATCC 33699]
          Length = 969

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 273/777 (35%), Positives = 428/777 (55%), Gaps = 43/777 (5%)

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            +Y  N  E  S+FS +  AL+N  ++       LQV    LP  I     +        L
Sbjct: 176  NYFLNDHEAQSLFSTI--ALDNLNKVLNE----LQVEIHDLPINIPVYDKNNLTVSSEIL 229

Query: 312  RNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            +   ++GL+ RL    G + K Y      +RL +EL+VI+  +F  YFLIV DFI +AK 
Sbjct: 230  KQLCISGLKQRLNAHDGQVKKVY-----AKRLKYELDVISEKQFDDYFLIVYDFINYAKS 284

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D   ++RD+
Sbjct: 285  NGIIVGPGRGSAAGSLVAYCLYITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKRDQ 344

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI Y+  KYG++ VA I+TF  L+AK ALRDVGR L +    +D++CK I  D    + L
Sbjct: 345  VIEYLFEKYGNDHVAYIVTFQRLKAKMALRDVGRILGIDLKVIDKICKNIKTDYDEDIDL 404

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             AI   +  +E  +       L EIS+KL    R   THAAGI++ +  ++ ++P+   +
Sbjct: 405  -AIKKSATLKEMYVLHK---ELFEISKKLIHAPRQIGTHAAGIILSNSSITNIIPIQLGI 460

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
             +D P++Q++M+++E+ GLIK D LGLK LT++   L  + + +  K+DL  I ++D   
Sbjct: 461  -NDRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIYKTQNKKIDLFNIDYNDKFV 519

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            +  L    T GIFQLES GM++ L  ++P  IEDI  + +L+RPGP  NI  +  R+  +
Sbjct: 520  FQDLAKAKTNGIFQLESPGMKKVLLKVKPQNIEDISIVSALFRPGPQQNIKTFVERRFKR 579

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E+    +     +L+ T G+IIYQEQV+++ + ++ + ++ +D  RRA+ KK ++ + + 
Sbjct: 580  EEFSYWNEQTKKILEPTYGIIIYQEQVIELVKTIANFDIATSDNFRRAISKKDEKILMQL 639

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K+ FI+GA  N   + +   IFE +  FA YGFN SH+ AY+ ISY  A++K +YP+EFL
Sbjct: 640  KDDFINGALANNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYPLEFL 699

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVG 846
            +  ++    + EK+  +  + + FNI I  P +     DF + +++  I +    IKG G
Sbjct: 700  SVLLSHTSASKEKLLSYLDETKDFNISIKGPDIQHFSNDFVIDNHKQIIRFGFKTIKGFG 759

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKK---LNRRVLESLVFAGALDCFGYSRMQLLQ 903
                + I  A  +     L D+ S +D+ K   ++ + +E L+  GA D F  +R+ LL 
Sbjct: 760  DELLKKIKLALENA---ELSDYISYIDALKKGNISLKNIEILIRIGAFDSFEINRLFLLN 816

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL-EKFSVENSSVRFENEQRVLGFY 962
            +L+ I       EK   N H          +++ +++ E+F         E+E + LG  
Sbjct: 817  NLEEI------FEKTGLNGHFFDLNLVGLDYANDMSINERFQ--------EDEIQYLGIN 862

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWV 1018
             S      Y   +    +K   ES   I  N  + + A V++  Q KT+KG+ I ++
Sbjct: 863  LSSLNYTNYTNEIDYSNLKYEIESFNEINTNYEVNIVAQVLNIVQSKTKKGNDIFYL 919



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 43/66 (65%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F++L VHS YSLL  ALS+++++     + QP + +TD NN++  +EF  KA A  + PI
Sbjct: 2  FINLNVHSYYSLLNSALSIDDLIQHALDNNQPYVCLTDLNNMYGCIEFYDKAKAHNLIPI 61

Query: 71 IGCQLD 76
          IG + +
Sbjct: 62 IGLEFE 67


>gi|290580380|ref|YP_003484772.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025]
 gi|254997279|dbj|BAH87880.1| DNA polymerase III alpha chain [Streptococcus mutans NN2025]
          Length = 1034

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 308/1030 (29%), Positives = 512/1030 (49%), Gaps = 112/1030 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L + + K        I I D +NL+ A  F ++A    + PI
Sbjct: 2    FAQLDTKTVYSFMDSLIDLKSYIKKAKEMGYSHIGIMDRDNLYGAFHFIKEAQKEKLVPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +LD+ + ++L              ++  +     GY  L+++ +        K + +
Sbjct: 62   LGLELDLFLSNDL-------------TTVCFIAQNTIGYHNLLKIST-------AKMTGQ 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               S ++E   +GL ++     G     F F+                    Y+ +++  
Sbjct: 102  QLFSDIEEF-MDGLAIIVPYFEGIDQMDFPFS-------------------FYIGVRK-- 139

Query: 191  GYDRYRESQVVQLAYTHE-LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                       QL +  + LPL   +   +   +D E   +L A+  +  +  ++ P V+
Sbjct: 140  --------DTPQLDFKRDILPL---HTVRYYDNDDTETLQILHAIRDN--LPLREVPPVS 186

Query: 250  PDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D YL ++ EM  IF +  P++L N  ++    S+        LPRF             
Sbjct: 187  KDQYLFSQEEMEQIFEERFPQSLLNLEKLVANVSYQFDTDLK-LPRFS------------ 233

Query: 309  NELRNK-AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               R+K AV  L+    +G I K   + DY++RL  EL VI +M F  YFLIV D +++ 
Sbjct: 234  ---RDKPAVVELKELAQKGLIEKKLLSDDYQKRLSDELAVIHQMGFDDYFLIVWDLLRFG 290

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +  +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R
Sbjct: 291  RSQHYYMGMGRGSAAGSLVAYALDITGIDPVKNDLLFERFLNEERYSMPDIDIDLPDIYR 350

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAHP 486
             + + YV+++YG    AQI+TF +  A+ A+RDV +       ++ ++ K I   D    
Sbjct: 351  SQFLNYVRDRYGSTHSAQIVTFSTFGARQAIRDVFKRFGATEYELSQITKKISFRDNLTS 410

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            V  + IA    FR+   +     R  EI++K+EG  R  S HAAGIV+ D  L+  +P+ 
Sbjct: 411  VYDKKIA----FRQLINSKIEYQRAFEIAKKIEGNPRQTSIHAAGIVMSDDNLTDHIPL- 465

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                 ++ +TQ++   +E  GL+K DFLGL+ LT +QK  + +AQ  G  +D+  I  +D
Sbjct: 466  -KTGEEMMITQYDAPAVEANGLLKMDFLGLRNLTFIQKMQEKVAQDYGRAIDIRAIDLED 524

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             ET  L     T GIFQ E++G    L+ ++P   E+++A  SL RPG  D    +  RK
Sbjct: 525  KETLALFAAGDTKGIFQFEAAGAINLLKRIKPSRFEEVVATTSLNRPGASDYTENFIRRK 584

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G+E++  I   I  +LK T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM
Sbjct: 585  YGQEEVDLIDSSIASILKSTYGIMLYQEQVMQIAQIFAGFTLGKADLLRRAMSKKNTVEM 644

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             K ++ F+ GA + G    +A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP 
Sbjct: 645  QKMEKDFLQGADQLGRDLKVAQDLFARMAKFAGYGFNRSHAYAYSALAFQMAYFKVHYPA 704

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F    +     +      +  +A + + ++ P S+NT     K+   +IY  L  IKG+
Sbjct: 705  VFFDVMLNYSSGD------YLSNALETHFKLGPLSINTIPYSDKISHGQIYLGLKNIKGL 758

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                A  I+E   ++PF S+EDF  R   K     ++  L+  G  D F  +R +++ +L
Sbjct: 759  NRDFAYWIIE---NRPFSSIEDFLIRTPEKYQKTEIITPLIQVGLFDQFDKNRQKIVVNL 815

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +++  +         N+  ++FA     +     +E     N+  +++ EQ ++G   S 
Sbjct: 816  EHLFTFV--------NELGSLFADSSYNW-----IEAQDYTNAE-KYQLEQDIIGTGVSP 861

Query: 966  HPL-DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEP 1023
            HPL ++ K   R +           + GN   + A + S +  +T+ +G ++ +++ ++ 
Sbjct: 862  HPLIEIAKHSSRHLIT-----LTDLVEGNEATILAQIESIRIIRTKSRGEQMAFLSVTDT 916

Query: 1024 AKEYEANFFP 1033
             K+     FP
Sbjct: 917  KKKLNITLFP 926


>gi|15829190|ref|NP_326550.1| DNA polymerase III DnaE [Mycoplasma pulmonis UAB CTIP]
 gi|14090134|emb|CAC13892.1| DNA POLYMERASE III, ALPHA CHAIN [Mycoplasma pulmonis]
          Length = 981

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 280/898 (31%), Positives = 457/898 (50%), Gaps = 105/898 (11%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F++L  +S YS L+  + +N+++     +    + +TDTN    A +F        I+ +
Sbjct: 4   FINLHTNSEYSFLDSLIRINDLVQYAKENNLKTLVLTDTN-FHGADKFYFLCKKNNIKAV 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G  +++D +                  ++LL     G++ L      M   +  +  + 
Sbjct: 63  LGLDIEVDHK-----------------RVILLAKNTSGFRSL------MLFSESNRNGLE 99

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I L+ L++   + LI++     G       F+  ++A+  +  F                
Sbjct: 100 ISLNQLEKT-QDDLIIINHPRLG-------FSMDEIAQSSIKNF---------------- 135

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            Y+     Q         L L    N LF  +++      ++ + +ST  +QK++     
Sbjct: 136 -YNTSNNDQ-------DPLSLYVVENKLFNVKDN-----PILEMLNSTNNNQKNKGI--- 179

Query: 251 DHYLKNRSEMVSIFSDLPEALENTV-EIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                   +  S ++ + E ++  + +I  +C+F  +     LP+F+            N
Sbjct: 180 ------EFKGFSHYAPISELMQKRINDIVDQCNFEYKKPEITLPKFM------------N 221

Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDY---RQRLDFELNVIARMKFSGYFLIVADFIQW 366
            L   +   L   L +    K +  Q Y   +QR+ +EL+VI+++ F  YFLI+ D I W
Sbjct: 222 NLGISSKDFLVKILKESWHEKSHKLQKYDNAKQRIKYELSVISKLGFEDYFLIIWDIINW 281

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           AKKN I +GPGRGS +GS+ +Y L IT+++PL F+L FERFLN DR+SMPD DID   +R
Sbjct: 282 AKKNKIAIGPGRGSASGSLVSYLLNITEVNPLEFNLFFERFLNEDRISMPDIDIDVQDNR 341

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           RDE++ Y+  KYG + V+ I TF  L AK+++RDVGR L +  ++++ + K I  D    
Sbjct: 342 RDELLNYIFEKYGEQNVSTISTFQFLGAKSSIRDVGRFLGINIAKINEISKHI--DAQQS 399

Query: 487 VSLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
           ++ Q   + S R       DP   +L++ + K+EGL R   THAAGI+I +  ++  +P 
Sbjct: 400 LAEQYENNQSLRSYLQNQEDPIFKKLIDFAMKIEGLPRQTGTHAAGIIISNEKINNYIPT 459

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
           +  + ++   +Q++M+ IEK G +K DFLGLKTL+ +    + +AQ         I FD 
Sbjct: 460 F--IVNNKNQSQYSMENIEKMGFLKIDFLGLKTLSTITHIEERIAQ------FEQIDFDK 511

Query: 606 HETY-------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             +Y        +L  K TLGIFQ+ES GM   +  +  D  +DI A +SLYRPGP+  I
Sbjct: 512 INSYIIDEKIKKVLENKSTLGIFQIESPGMTNTINKINVDDFKDIYAAISLYRPGPLKFI 571

Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
            VY   K   + I  I    D ++K+T G+I+YQEQ+M+IAQ +SG+  +EADVLR+A+ 
Sbjct: 572 SVYAKNKKNPKNIKKIIEPYDNIVKDTYGIIVYQEQIMEIAQKVSGFKFTEADVLRKAIS 631

Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           KK    +D+ K +FI G  KNG  K +  NI+  +  FA YGFNKSHA AYAV+ Y+  +
Sbjct: 632 KKDITLLDEMKAKFIQGGIKNGHPKNVVENIYLTIEDFAQYGFNKSHAVAYAVLVYKMLY 691

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            K HYP+ F ++ +     N + +K +  +A++ NI    PS+N       +  N ++  
Sbjct: 692 YKAHYPLFFYSSLIKTNHTNQDNLKTYFLEAKKNNIAFYSPSINNVSEQNILSKNEMFLP 751

Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
           L  IKG G      +  +   +  + S +DF  R    +L +  +E+L+ A AL  FG
Sbjct: 752 LIMIKGFGPAAYNKVYKDFQENGLYKSFDDFIQRAWKMELGKANIETLIKANALREFG 809


>gi|312140803|ref|YP_004008139.1| DNA polymerase iii alpha subunit dnae2 [Rhodococcus equi 103S]
 gi|311890142|emb|CBH49460.1| DNA polymerase III alpha subunit DnaE2 [Rhodococcus equi 103S]
          Length = 1093

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 282/904 (31%), Positives = 455/904 (50%), Gaps = 46/904 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS++S L+GA     ++++       AIA+TD + ++  + F++ A   G++ +
Sbjct: 59  YAELHTHSAFSFLDGASPPEELVEEAVRLGLDAIALTDHDGMYGVVRFAEAAKELGMRTV 118

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L +D       T +  TP P    +++L    EGY+RL   ++  +L    K   R
Sbjct: 119 FGAELSLDA------TPRTGTPDPGGTHLLVLARGQEGYRRLSRQIAAAHLAGGEKGKPR 172

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                L E       +LTG   G +  A        AE  L      FG DR+ V L  H
Sbjct: 173 YDYDALTEAAGGHWQILTGCRKGHVRSALAAGGPDAAEAALRDLVDRFGADRVTVELT-H 231

Query: 190 RGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           RG     E  + + ++A   +LP++A+  + F           + AV     + +     
Sbjct: 232 RGLPEDDEINAALAEIATRQQLPVIASTAAHFAGPPRRRLAMAMAAVRARQSLDEAAGWL 291

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             T   +L++ +EM  +F+  PEA+     +   C+F L++ AP LP F   +       
Sbjct: 292 APTGGAHLRSGAEMARLFAQCPEAVAGAAALGLECAFDLRLIAPKLPPFDVPD----GHT 347

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
           E + LR   + G   R    +     +AQ     ++ EL++I R+ F GYFL+V D + +
Sbjct: 348 EASWLRELTMQGARRRYGPPSANPAAYAQ-----IEHELDIIERLTFPGYFLVVHDIVSF 402

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            K N+I +  GRGS A S   YA+ IT++DP+R  LLFERFL+P+R   PD D+D   DR
Sbjct: 403 CKDNDI-LCQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLSPERDGPPDIDVDIESDR 461

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+E I++V  KYG E  AQ+    + + K+++RD+ RAL     Q D   K +       
Sbjct: 462 REEAIQHVYTKYGREYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSKQVSRWTG-- 519

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           V  +   D           P+V   LE++ ++EG  RH   H+ G+VI DRP++ + P+ 
Sbjct: 520 VGQETDTD---------IPPAV---LELAAQIEGFPRHLGIHSGGMVICDRPIADVCPVE 567

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +  V Q++       GL+KFD LGL  L+ L   +D +A+ +G++VDL+ +   +
Sbjct: 568 WARMENRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYMIDLVAEHKGIEVDLAQLDLSE 627

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
              Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  Y  
Sbjct: 628 QAVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVHPYIR 687

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIK 722
           R+NG+E +V  HP ++  L  T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG K+  
Sbjct: 688 RRNGREPVVYDHPCLEKALARTLGVPLFQEQLMQMAVDAAGFSAAEADQLRRAMGSKRSP 747

Query: 723 EEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
           E+M++ + R   G  + +GI+  +A  I+E L  FA++GF +SH+ ++A + + ++W K 
Sbjct: 748 EKMERLRGRLYDGMRELHGITGDVADRIYEKLHAFANFGFPESHSQSFASLVFYSSWFKL 807

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC--VDFKVGDNRIYYSL 839
           H+P  F A  +  +       +    DAR+  +++    VN        +     +   L
Sbjct: 808 HHPAAFCAGLLRAQPMGFYSPQSLVADARRHGVRVHGADVNASLAHATLEACGTEVRLGL 867

Query: 840 AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             ++G+G   A  I+ A A D PF S+ D   R+D   L    +ESL  AGAL CFG SR
Sbjct: 868 GEVRGIGDALAERIVAARAEDGPFRSILDLTGRID---LTTGQVESLATAGALSCFGLSR 924

Query: 899 MQLL 902
            + L
Sbjct: 925 REAL 928


>gi|295695654|ref|YP_003588892.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
 gi|295411256|gb|ADG05748.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
          Length = 1022

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 308/1031 (29%), Positives = 511/1031 (49%), Gaps = 61/1031 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
             VHL  HS +S L+GA +   ++D  +     A+A+TD + +   + F + A   GI+PI
Sbjct: 1    MVHLHAHSYFSFLDGASAPEELVDIASQLGISAMALTDRDTVAGLVPFHRAAERVGIRPI 60

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +  I M+D   +T              +L   A+GY  L  L+++ +L     +   
Sbjct: 61   SGSE--ITMEDGTVLT--------------VLAENAKGYAELCTLLTKAHLSHPRGEPRT 104

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ-R 188
            +    ++    EGLI+L+G   G I        +Q A +     +   G DR ++ +Q  
Sbjct: 105  LYQDLVKH--REGLIVLSGDRRGRIPTLLLQKQNQKAREMAEWLRDGLGKDRFFLEIQDS 162

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--QKDRP 246
                 ++   ++ +LA T ++ + AT++  + S + +  +DVL  + + T +     +RP
Sbjct: 163  FTPGSQHLTGRLCELADTLDIGVTATHDIHYASPDQFPIYDVLTCIRNQTGLESPHPERP 222

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +    YL +  EM   F   P+AL   +EIA RC   L +  P  P F     D     
Sbjct: 223  -LNGKAYLLSPEEMTLRFKRRPDALHRAMEIAERCQVSLDLSLPRHPAFPHGPGD----- 276

Query: 307  EENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                     +A L     +GAI + G    + R+RL+ EL +I  + ++ YFL+V D +Q
Sbjct: 277  -------TPMAILRRLTEEGAIRRYGSLTPEIRRRLEHELAIIETLGYADYFLVVWDVVQ 329

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+K  I    GRGS A S  AY L ITD+D     LLFERF++ +R   PD D+DF   
Sbjct: 330  YARKKGIRYA-GRGSAADSAVAYCLGITDVDAAGRGLLFERFISLERGEKPDIDVDFDAR 388

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEV  YV N+YG + VA + T+ + Q ++A+R+VGR +  P   +DRL K IP     
Sbjct: 389  RRDEVAAYVYNRYGEDHVAAVCTYQTFQIRSAIREVGRVMGFPPPLLDRLAKRIPYMVRA 448

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                 A+      R+A +    V +L  +   L  + RH  TH  G+VI   PL+ +  +
Sbjct: 449  GELGAALERFPELRDAGIEQKQVWQLFHLVSALVDIPRHIGTHLGGLVISRDPLTTVTSL 508

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
             R  +  + +T F+ + +E  GL+K D L L+TL+ ++ ++  L + G  +D   IP DD
Sbjct: 509  QRSAKGVI-ITPFDKRAVEDVGLMKLDLLSLRTLSAVEDTVQLLHRDGKPIDPEDIPLDD 567

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
             +T+  +    T+G+FQLES   R     ++PD +ED++A V+L RPGPI   +V  +  
Sbjct: 568  PDTFAAIGEGRTIGVFQLESPAQRALQVRLKPDHLEDLVASVALIRPGPIKGNMVEPFLE 627

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIK 722
            R+ G  +   IHP + P+L +T GVI++QEQV++I   ++G++  EAD LRR M   +  
Sbjct: 628  RRRGNAEFHYIHPALKPILDKTYGVILFQEQVIEIVTAVAGFTPGEADRLRRVMSHHRSL 687

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EM++  E F+  +   G+S+  A  I+  +  +A YGF ++HAAA+A  +Y+TA++  H
Sbjct: 688  REMEEIGELFLEKSMARGVSRETAEQIYNYIKGYASYGFCEAHAAAFAATAYRTAYLARH 747

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP  + A  +         I   C +A +  ++I+PP VN      ++    I   L  I
Sbjct: 748  YPAAYYAGLLNQFPMGYYPIHVLCSEAHRRGVEILPPDVNNSETGCRLEKGNIRLGLNLI 807

Query: 843  KGVG-TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KG+     AR I +     PF S E+FC R+     +R +LE+L+  GA D    +R QL
Sbjct: 808  KGLPREEVARIIEDRERHGPFASPEEFCLRIHP---SRTLLENLILTGAFDRLYPNRRQL 864

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L  L+++      ++ +  + H        G   D  TL++        R  +E R++  
Sbjct: 865  LWYLNDL------LQLSGVDIHWTQILPPPGDSGD-FTLKE--------RLFHEYRLIQV 909

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
              SGH +++++P+LR        + + +  G  +  A ++V   +  T  G  + + +  
Sbjct: 910  GLSGHLMELFRPVLRTRRFLPVVD-LESFEGKEVWTAGILVRPHRPPTPSGKTVVFFSLE 968

Query: 1022 EPAKEYEANFF 1032
            +     +A  F
Sbjct: 969  DETGIVDAVMF 979


>gi|330723855|gb|AEC46225.1| DNA polymerase III DnaE [Mycoplasma hyorhinis MCLD]
          Length = 979

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 320/985 (32%), Positives = 510/985 (51%), Gaps = 118/985 (11%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           ++L  ++ YS L+  + ++++++     Q   + ITD +N+F   +F  +  A  I PII
Sbjct: 5   INLHTNTEYSFLQSTIKISSLIEYAKQHQLKHLVITDRDNIFGVAKFYNECKANNINPII 64

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G  L+I                         +  A+ YQ  + L     LL   K S + 
Sbjct: 65  GLDLEIKS--------------------FRFILIAKNYQGFLHLS----LLSSKKMSFKE 100

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               ++E+  E +I++     G   +           K++L F   F             
Sbjct: 101 I--EIEELDNENIIVIDHPKLGLYSKT----------KKMLEFSNYFVHS---------- 138

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                +S++    Y      V T N L+ SEE Y    +L  +A S   S+KD       
Sbjct: 139 ----NDSKIANSVY------VQTRNVLYASEEKY--LKILHKIADS---SEKD------- 176

Query: 252 HYLKNRSEMVSIFSDLPEALENTVE-IARRCSFILQ---VHAP----ILPRFIEKECDDI 303
                  E V  F D     E   E I +R +F+++   +  P    ILP F + E +  
Sbjct: 177 -------EAVD-FIDFEMWYEQVDEQIIQRTNFLVENILIEFPEANMILPDF-KNEANLN 227

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E   +L  K VA  +        A+  +  ++++RL +E N+I  +KFS YFLI+ DF
Sbjct: 228 PDEFLQQLLEKQVAKKK--------AEFKNFPNFKERLVYEFNIIKSLKFSNYFLIIWDF 279

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           ++WA+KNNI +GPGRGS +GS+ +Y L IT ++PL+F L+FERFLNP R+SMPD DID  
Sbjct: 280 LRWARKNNILIGPGRGSSSGSLISYLLNITQVNPLKFDLIFERFLNPKRISMPDIDIDIQ 339

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ-MPYSQVDRLCKLIPND 482
            +RRDE+I+Y+Q KYG+E  A IITF +  AK A  DV + L+ +  + V  + K IP  
Sbjct: 340 DNRRDELIQYIQQKYGYENTALIITFSTFGAKMAFADVAKKLKNVSPTDVLAITKHIP-- 397

Query: 483 PAHPVSL-QAIADDSRFR-----EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
               +SL QA   ++ FR     +    +     + EI++ LEG+ R + THAAGIVI D
Sbjct: 398 --FGLSLEQAYKTNANFRAYVEKQDNNGNFLYKEIFEIAKFLEGMPRQSGTHAAGIVIAD 455

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVK 595
           +PL   VP     +     TQF+ +++E+  L+K D LGLK LT+++  ++ + Q   + 
Sbjct: 456 KPLYNYVPTLIS-KDKYNQTQFSAEFLEQFSLLKIDLLGLKNLTVVKGIINSINQHSNLN 514

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            + + IP  D  T  LLT   T+GIFQLES GM   L  +    I+D++A++SL+RPGPI
Sbjct: 515 FNFNSIPIFDKGTNELLTRGKTVGIFQLESPGMANTLRKVGISSIDDVVAVISLFRPGPI 574

Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            NI +Y  RK  +     I    + +LK T G+IIYQEQ+MQI Q ++G+  + +D++RR
Sbjct: 575 KNIPLYAQRKKNEADYEIISQEYNDILKSTYGIIIYQEQIMQICQTIAGFDFATSDLIRR 634

Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
           A+ KK  +++ K K+ FI G    G S  +   IF+ +  FA+YGFNKSHA AYA ++Y+
Sbjct: 635 AISKKEAKKLYKAKQLFIQGGLNKGYSAVVLEKIFQQIEYFAEYGFNKSHAVAYATLAYK 694

Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN--TPCVDFKVGDN 833
            A++K +YP+EF +  +T E  +   I KF ++A Q  I+   P++N  T  V ++   +
Sbjct: 695 MAYLKQNYPLEFYSFLITNEEGSQTNIAKFIKEA-QPAIKFKKPNINISTTSVVYERKTS 753

Query: 834 RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            IY  L  IKG+G+   + I+E  + +  +    DF  R+    ++  ++  L+ +G L 
Sbjct: 754 TIYLPLILIKGLGSVACQKILEERNKNGLYKDFLDFVIRMKIINISNTIITLLINSGTLS 813

Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            FG +   LL++L   + Y   +     ++++N++  +      K  LE    +N  +  
Sbjct: 814 EFG-NIPTLLENLVTAESYKICI---LEDENKNLYC-DYSLIPGKFELE-IKEDNLELTI 867

Query: 953 ENEQRVLGFYFSG--HPLDVYKPIL 975
           ENE+++LG  FS     +D+  P+L
Sbjct: 868 ENEEKLLGMSFSSFDQNIDLKNPVL 892


>gi|111657741|ref|ZP_01408464.1| hypothetical protein SpneT_02001071 [Streptococcus pneumoniae
           TIGR4]
          Length = 1020

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 303/935 (32%), Positives = 487/935 (52%), Gaps = 115/935 (12%)

Query: 44  IAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           +A+ D +NL+ A +F +     GI P++G ++ + + D      QG        ++  L 
Sbjct: 22  LAMMDIDNLYGAFDFLEITKKYGIHPLLGLEMTVFVDD------QG-------VNLRFLA 68

Query: 104 STAEGYQRLIEL-VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
            ++ GYQ+L++L  ++M    QG+++  +   +L++I     +++            +F+
Sbjct: 69  LSSVGYQQLMKLSTAKM----QGEKTWSVLSQYLEDIA----VIVP-----------YFD 109

Query: 163 SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
             +  E          G   Y+ +        Y E+   +  +   LPL   N       
Sbjct: 110 RVESLE---------LGCDYYIGV--------YPETLASEFHHPI-LPLYRVNA---FES 148

Query: 223 EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRC 281
            D E   VL A+  +  +  ++ P  +      + S +  +F +  P+AL+N  ++    
Sbjct: 149 RDREVLQVLTAIKEN--LPLREVPLRSRQDVFISASSLEKLFQERFPQALDNLEKLISGI 206

Query: 282 SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
           S+ L      LPRF      +  +    ELR +A  GL        + KG  +++Y+ RL
Sbjct: 207 SYDLDTSLK-LPRF------NPARPAVEELRERAELGL--------VQKGLTSKEYQDRL 251

Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
           D EL+VI  M F  YFL+V D +++ + N   +G GRGS  GS+ +YAL IT IDP+  +
Sbjct: 252 DQELSVIHDMGFDDYFLVVWDLLRFGQSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKN 311

Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
           L+FERFLN +R +MPD DID     R + IRYV NKYG +  AQI+TF +  AK ALRDV
Sbjct: 312 LIFERFLNRERYTMPDIDIDIPDIYRPDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDV 371

Query: 462 GRALQMPYSQVDRLCKLIPN----DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
            +   +P  ++  + K I        A+  +LQ       FR+   +     +  EI+ K
Sbjct: 372 LKRFGVPEYELSAITKKISFRDNLKSAYEGNLQ-------FRQQINSKLEYQKAFEIACK 424

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           +EG  R  S HAAG+VI D+ L+  +P+ Y D   ++P+TQ++   +E +GL+K DFLGL
Sbjct: 425 IEGYPRQTSVHAAGVVISDQDLTNYIPLKYGD---EIPLTQYDAHGVEASGLLKMDFLGL 481

Query: 577 KTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
           + LT +QK  + LA+  G+ + +  I  +D ET  L  +  T GIFQ E  G  + L+ +
Sbjct: 482 RNLTFVQKMQELLAETEGIHLKIEEIDLEDKETLALFASGNTKGIFQFEQPGAIRLLKRV 541

Query: 636 QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
           QP C ED++A  SL RPG  D I  +  RK+G+E++  + P+++ +L  T G+++YQEQV
Sbjct: 542 QPVCFEDVVATTSLNRPGASDYINNFVARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQV 601

Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           MQ+AQ L+G+SL +AD+LRRAMGKK    M + +  FI G+ + G +   A  +F+++ K
Sbjct: 602 MQVAQRLAGFSLGKADILRRAMGKKDASAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEK 661

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
           FA YGFN+SHA AY+ +++Q A+ KTHYP  F    + L   N +    +  DA +   +
Sbjct: 662 FAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFY--QVMLNSSNSD----YLIDALEAGFE 715

Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
           +   S+NT     K+ +  IY  L +IKGV    A  I+E   ++P+ ++EDF +++   
Sbjct: 716 VASLSINTIPYHDKIANKAIYLGLKSIKGVSNDLALWIIE---NRPYSNIEDFIAKLPEN 772

Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-F 934
            L   +LE LV  G  D F  +R ++  +L N+ +                F  E G+ F
Sbjct: 773 YLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE----------------FVKELGSLF 816

Query: 935 SDKI-TLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
            D I + ++        +F  EQ +LG   S HPL
Sbjct: 817 GDAIYSWQESEDWTEQEKFYMEQELLGIGVSKHPL 851


>gi|307708635|ref|ZP_07645099.1| DNA polymerase III alpha subunit [Streptococcus mitis NCTC 12261]
 gi|307615384|gb|EFN94593.1| DNA polymerase III alpha subunit [Streptococcus mitis NCTC 12261]
          Length = 1033

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 303/966 (31%), Positives = 491/966 (50%), Gaps = 115/966 (11%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S++  +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIDKYVRAAKEFGYTHLAMMDIDNLYGAFDFLEVTKKYGIHPLLG 63

Query: 73  CQLDIDMQD---NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQS 128
            ++++ + D   NL+                 L  ++ GYQ+L++L  ++M    QG++S
Sbjct: 64  LEMNVIVDDKDVNLR----------------FLALSSVGYQQLMKLSTAKM----QGEKS 103

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +   +L++I                                +     F +   +NL  
Sbjct: 104 WSVLSQYLEDI--------------------------------VVIVPYFEELELLNL-- 129

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             G D Y       LA     P++          +D E   VL A+  +  +  ++ P  
Sbjct: 130 --GCDYYIGVYPETLASEFHHPILPLYRVNTFESKDREVLQVLTAIKEN--LPLREVPLR 185

Query: 249 TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           +      + S +  +F +  P+AL+N  ++    S+ L      LPRF      +  +  
Sbjct: 186 SKQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLK-LPRF------NPARPA 238

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             ELR +A    E+ LAQ    KG   ++Y+ RLD EL VI  M F  YFL+V D +++ 
Sbjct: 239 VEELRERA----ELGLAQ----KGLTGKEYQDRLDQELAVIHDMGFDDYFLVVWDLLRFG 290

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R
Sbjct: 291 RSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYR 350

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DP 483
            + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I        
Sbjct: 351 PDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +
Sbjct: 411 AYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYI 463

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
           P+      ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I 
Sbjct: 464 PLKHG--DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEDIHLKIEEID 521

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  + 
Sbjct: 522 LEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFV 581

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK  
Sbjct: 582 ARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDA 641

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTH
Sbjct: 642 TAMHEMRASFIQGSIEAGHTAEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTH 701

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
           YP  F    + L   N +    +  DA +   ++ P S+NT     K+ +  IY  L +I
Sbjct: 702 YPAIFY--QIMLNSANSD----YVTDALEAGFEVAPLSINTIPYHDKIANKSIYLGLKSI 755

Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
           KG+    A  I+E    +P+ ++EDF +++    L   +LE LV  G  D F  +R ++ 
Sbjct: 756 KGLSKDLAIWIIE---HRPYSNIEDFLAKLPENYLKLPLLEPLVKVGLFDSFEKNRKKVF 812

Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            +L N+ ++ + +         ++F     ++ D    E ++ +    +F  EQ +LG  
Sbjct: 813 NNLVNLFEFVKVL--------GSLFGETIYSWQDS---EDWTEQE---KFYMEQELLGVG 858

Query: 963 FSGHPL 968
            S HPL
Sbjct: 859 VSKHPL 864


>gi|168490982|ref|ZP_02715125.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           CDC0288-04]
 gi|183574706|gb|EDT95234.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           CDC0288-04]
          Length = 1033

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 305/969 (31%), Positives = 495/969 (51%), Gaps = 121/969 (12%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLG 63

Query: 73  CQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQS 128
            ++ +   D + NL+                 L  ++ GYQ+L++L  ++M    QG+++
Sbjct: 64  LEMTVFVDDQEVNLR----------------FLALSSVGYQQLMKLSTAKM----QGEKT 103

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +   +L++I     +++            +F+  +  E          G   Y+ +  
Sbjct: 104 WSVLSQYLEDIA----VIVP-----------YFDRVESLE---------LGCDYYIGV-- 137

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 Y E+   +  +   LPL   N        D E   VL A+  +  +  ++ P  
Sbjct: 138 ------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLR 185

Query: 249 TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           +      + S +  +F +  P+AL+N  ++    S+ L      LPRF      +  +  
Sbjct: 186 SRQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLK-LPRF------NPARPA 238

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             ELR +A  GL        + KG  +++Y+ RL+ EL+VI  M F  YFL+V D +++ 
Sbjct: 239 VEELRERAELGL--------VQKGLTSKEYQDRLEQELSVIHDMGFDDYFLVVWDLLRFG 290

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R
Sbjct: 291 RSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYR 350

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DP 483
            + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I        
Sbjct: 351 PDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           A+  +LQ       FR+   +     +  +I+ K+EG  R  S HAAG+VI D+ L+  +
Sbjct: 411 AYEGNLQ-------FRQQINSKLEYQKAFDIACKIEGYPRQTSVHAAGVVISDQDLTNYI 463

Query: 544 PM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
           P+ Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I
Sbjct: 464 PLKYGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEI 520

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +
Sbjct: 521 DLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNF 580

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK 
Sbjct: 581 VARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKD 640

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KT
Sbjct: 641 ASAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKT 700

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           HYP  F    + L   N +    +  DA +   ++   S+NT     K+ +  IY  L +
Sbjct: 701 HYPAIFY--QVMLNSSNSD----YLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKS 754

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++
Sbjct: 755 IKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKV 811

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVL 959
             +L N+ +                F  E G+ F D I + ++        +F  EQ +L
Sbjct: 812 FNNLANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELL 855

Query: 960 GFYFSGHPL 968
           G   S HPL
Sbjct: 856 GIGVSKHPL 864


>gi|225868663|ref|YP_002744611.1| DNA polymerase III alpha subunit [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701939|emb|CAW99466.1| DNA polymerase III alpha subunit [Streptococcus equi subsp.
           zooepidemicus]
          Length = 1036

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 301/961 (31%), Positives = 472/961 (49%), Gaps = 99/961 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F  L   + YS ++  + LN+   +       AI I D +NL+ A  F +     G+QPI
Sbjct: 2   FAQLDTKTVYSFMDSLIDLNHYFKQAKRLGYQAIGIMDQDNLYGAYHFIKGCQRHGLQPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G ++ I +++                ++ L+     GYQ+L++L +       G   + 
Sbjct: 62  LGLEVAITVKEQ-------------ALTLKLVAKNDTGYQQLLKLSTEKM---SGDLDLD 105

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
             + +L     EG+ ++   S    D               L F    G     +L +  
Sbjct: 106 TLVQYL-----EGIAVIVPFSQSLRDLG-------------LPFDYFIGIDEASDLSKIG 147

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             +R                L+      +    + E   +L A+  +  +S  D   V  
Sbjct: 148 STER----------------LIPFRTVRYFDNAETETLQMLHAIRDN--ISLADTALVAK 189

Query: 251 DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
           D +L    EM ++F +  PEAL N V +    ++        LPRF      +  K  + 
Sbjct: 190 DQFLAPCQEMTAVFQEKCPEALVNLVNLTASIAYHFDTDLK-LPRF------NRDKPAKE 242

Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
           ELR    +GL  R            + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243 ELRELTESGLRER--------QLWKEPYQSRLAEELAIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
               +G GRGS AGS+ AY+L IT IDP++ +LLFERFLN +R SMPD DID     R E
Sbjct: 295 RGYYMGMGRGSAAGSLVAYSLRITGIDPVKNNLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAHPVS 488
            + YV+++YG E  AQI+TF +   K A+RDV +   +P  ++  L K I   D    V 
Sbjct: 355 FLHYVRDRYGSEHSAQIVTFSTFGPKQAVRDVFKRFGVPEYELTSLTKKIGFKDTLSTVY 414

Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            + IA    FR+   +     +  EI++++EG  R  S HAAGIV+ D  L+  +P+ + 
Sbjct: 415 EKNIA----FRQTINSRLEFQKAFEIAKRIEGNPRQTSIHAAGIVMSDDHLTNHIPLKKG 470

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607
              D+ VTQ++   +E  GL+K DFLGL+ LTL+QK  +  +   G+ +D+  I  +D E
Sbjct: 471 --EDMMVTQYDASAVEANGLLKMDFLGLRNLTLVQKMQEKVVNDYGLSIDIEAINLEDPE 528

Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
           T  L     T GIFQ E  G    L+ ++P   E+I+A  SL RPG  D    +  R+ G
Sbjct: 529 TIALFARGDTKGIFQFEQHGAISLLKRIKPTSFEEIVATTSLNRPGASDYTQNFIKRRQG 588

Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
           +E I  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM +
Sbjct: 589 QENIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLVEMQR 648

Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +E F++GA   G S+  A  +F  + KFA YGFN+SHA AYA +++Q A+ K HYP  F
Sbjct: 649 MQEDFLNGAKALGRSEETARLLFARMEKFAGYGFNRSHAFAYAALAFQLAYFKAHYPEVF 708

Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
               M     +      +  DA  F  +    ++NT   + K+  ++IY  L  IKG+  
Sbjct: 709 FDVMMNYSSSD------YITDALDFGFEAAQVTINTIPFNDKIERHKIYMGLKNIKGLPR 762

Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             +  I+E   ++PF S+E+F   +  K      LE L+  G  D F  +R +++ +L+ 
Sbjct: 763 EFSYWIIE---NRPFTSVENFLCSIPEKYQKTSFLEPLIKIGLFDGFEKNRQKIINNLEG 819

Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
           +  +         N+  ++FA    ++   +  E +S   ++ ++  EQ +LG   S HP
Sbjct: 820 LLTF--------VNELGSLFADSSFSW---VETEDYS---AAEKYYFEQDLLGVGMSKHP 865

Query: 968 L 968
           L
Sbjct: 866 L 866


>gi|183981180|ref|YP_001849471.1| DNA polymerase III, alpha chain, DnaE2 [Mycobacterium marinum M]
 gi|183174506|gb|ACC39616.1| DNA polymerase III, alpha chain, DnaE2 [Mycobacterium marinum M]
          Length = 1100

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 277/907 (30%), Positives = 467/907 (51%), Gaps = 42/907 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           ++ S ++  L  HS+YS L+GA +   ++++ A     A+A+TD N L+ A+ F++ A  
Sbjct: 58  VDSSIAYAELHAHSAYSFLDGASTPEELVEEAARLDLRALALTDHNGLYGAVRFAEAASG 117

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G++ + G +L      +L    + + P P  P +++L    EGY+RL   ++  +L   
Sbjct: 118 LGVRTVFGAEL------SLGPEARTEQPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGG 171

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
            K   R     L E       +LTG   G + +A        AE+ L      F   R+ 
Sbjct: 172 EKGKPRYDFDSLTEAAGGHWHILTGCRKGHVRQALRQGGPDAAERALADLVDRFTAGRVS 231

Query: 184 VNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVS 241
           V L  H    D    + +  LA    + +VAT  + F           + A+ A  ++ S
Sbjct: 232 VELTHHGHPLDDENNAMLAGLAPRFGVGVVATTGAHFAHPARSRLAMAMGAIRARQSLDS 291

Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                      +L++ +EM  +F+  P+ +    E+  +C+F L + AP LP F   +  
Sbjct: 292 AAGWLAPLGGSHLRSGAEMARLFAQRPDVVTAAAELGEQCAFGLALIAPRLPPFDVPD-- 349

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                E++ LR+  ++G   R   G+  +   A+    +++ EL VIA++ F GYFL+V 
Sbjct: 350 --GHTEDSWLRSLVMSGARERY--GSTERSPRARKAYTQIEHELKVIAQLSFPGYFLVVH 405

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D  Q+ ++N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P+R   PD DID
Sbjct: 406 DITQFCRRNDI-LCQGRGSAANSAVCYALGVTAVDPIANELLFERFLSPERDGPPDIDID 464

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
              D+R++VI+YV NKYG +  AQ+    + + ++A+RD+ RAL     Q D   K I +
Sbjct: 465 IESDQREKVIQYVYNKYGRDYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQIGH 524

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             A P  ++ I                +++++++ ++  L RH   H+ G+VI DRP++ 
Sbjct: 525 WNATPDDVEGIP---------------EQVIDLAAQIRNLPRHMGIHSGGMVICDRPIAD 569

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
           + P+     +D  V Q++       GL+KFD LGL  L+ L  + D +A+ +G++VDL+ 
Sbjct: 570 VCPVEWARMADRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYARDLVAEHKGIEVDLAR 629

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
           +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V
Sbjct: 630 LDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSV 689

Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             Y  R+NG + +V  HP ++  L++T GV ++QEQ+MQ+A   +G+S +EAD LRRA+G
Sbjct: 690 HPYIRRRNGIDPVVYEHPSMESALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAIG 749

Query: 719 -KKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            K+  E M + + RF  G  + +G    +   I+E L  FA++GF +SHA ++A + + +
Sbjct: 750 SKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYS 809

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--R 834
           +W K H+P  F AA +  +       +    DAR+  + +  P VN       + +   +
Sbjct: 810 SWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVLVHGPDVNASLAHATLENAGMQ 869

Query: 835 IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
           +   L A++ +G   A  ++ E + + PF SL +  SRV   +L+    E+L  AGAL C
Sbjct: 870 VRLGLGAVRHIGDDLAESLVAERNDNGPFASLLNLTSRV---QLSVPQTEALATAGALGC 926

Query: 894 FGYSRMQ 900
           FG SR +
Sbjct: 927 FGMSRRE 933


>gi|195978007|ref|YP_002123251.1| DNA polymerase III DnaE [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974712|gb|ACG62238.1| DNA polymerase III alpha subunit DnaE [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 1046

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 303/974 (31%), Positives = 483/974 (49%), Gaps = 113/974 (11%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           L++   F  L   + YS ++  + L++   +       AI I D +NL+ A  F +    
Sbjct: 6   LKEMSMFAQLDTKTVYSFMDSLIDLDHYFKQAKRLGYQAIGIMDQDNLYGAYHFIKGCQR 65

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR------ 118
            G+QPI+G ++ I +++                ++ L+     GYQ+L++L +       
Sbjct: 66  HGLQPILGLEVAITVKEQ-------------TLTLKLVAKNDTGYQQLLKLSTEKMSGEL 112

Query: 119 -MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            +  L Q  + + + + + Q +   GL         P D  +F    + ++       K+
Sbjct: 113 DLDTLVQHLEGIAVIVPFRQSLSDLGL---------PFD--YFIGIDEASD-----LSKI 156

Query: 178 FGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
                 + L+  R +D   E++ +Q+       L A  +++ L+                
Sbjct: 157 GSAERLIPLRTVRYFDN-AETETLQM-------LHAIRDNVGLA---------------- 192

Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFI 296
                 D   V  D +L    E+ +IF +  PEAL N  E+    ++        LPRF 
Sbjct: 193 ------DTALVAKDQFLAPCQEVTAIFQEKCPEALLNLAELTASIAYHFDTDLK-LPRF- 244

Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                +  K  + ELR    +GL  R            + Y+ RL  EL +I+ M F  Y
Sbjct: 245 -----NRDKPAKEELRELTESGLRER--------QLWKEPYQSRLAEELAIISDMGFDDY 291

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
           FLIV D +++ +     +G GRGS AGS+ AY+L IT IDP++ +LLFERFLN +R SMP
Sbjct: 292 FLIVWDLLRFGRSRGYYMGMGRGSAAGSLVAYSLRITGIDPVKNNLLFERFLNKERYSMP 351

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           D DID     R E + YV+++YG E  AQI+TF +   K A+RDV +   +P  ++  L 
Sbjct: 352 DIDIDLPDIYRSEFLHYVRDRYGSEHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELASLT 411

Query: 477 KLIP-NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
           K I   D    V  + IA    FR+   +   + +  EI++ +EG  R  S HAAGIV+ 
Sbjct: 412 KKIGFKDTLSTVYEKNIA----FRQTINSRLELQKAFEIAKCIEGNPRQTSIHAAGIVMS 467

Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGV 594
           D PL+  +P+ +    D+ VTQ++   +E  GL+K DFLGL+ LTL+QK  +  +   G+
Sbjct: 468 DDPLTNHIPLKKG--EDMMVTQYDANAVEANGLLKMDFLGLRNLTLVQKMQEKVVNDYGL 525

Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +D+  I  +D ET  L     T GIFQ E  G    L+ ++P   E+I+A  SL RPG 
Sbjct: 526 SIDIEAINLEDPETIALFARGDTKGIFQFEQHGAISLLKRIKPTSFEEIVATTSLNRPGA 585

Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            D    +  R+ G+E I  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LR
Sbjct: 586 SDYTQNFIKRRQGQENIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLR 645

Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           RAM KK   EM + +E F++GA   G S+  A  +F  + KFA YGFN+SHA AYA +++
Sbjct: 646 RAMSKKNLVEMQRMQEDFLTGARALGRSEETARLLFARMEKFAGYGFNRSHAFAYAALAF 705

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
           Q A+ K HYP  F    M     +      +  DA  F  +    ++NT   + K+  ++
Sbjct: 706 QLAYFKAHYPEVFFDVMMNYSSSD------YITDALDFGFEAAQVTINTIPFNDKIERHK 759

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
           IY  L  IKG+    +  I+E   ++PF S+E F   +  K      LE L+  G  D F
Sbjct: 760 IYMGLKNIKGLPREFSYWIIE---NRPFTSVESFLCSIPEKYQKTSFLEPLIKIGLFDGF 816

Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
             +R +++ +L+ +  +         N+  ++FA    ++   +  E +S   ++ ++  
Sbjct: 817 EKNRQKIINNLEGLLTF--------VNELGSLFADSSFSW---VETEDYS---AAEKYYF 862

Query: 955 EQRVLGFYFSGHPL 968
           EQ +LG   S HPL
Sbjct: 863 EQDLLGVGMSKHPL 876


>gi|319947285|ref|ZP_08021518.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            australis ATCC 700641]
 gi|319746527|gb|EFV98787.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            australis ATCC 700641]
          Length = 1033

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 272/783 (34%), Positives = 414/783 (52%), Gaps = 68/783 (8%)

Query: 268  PEALENTV------EIARRCSFILQVHAPI-----LPRFIEKECDDIQKEEENELRNKAV 316
            PE LE          IA     ++ VH  I     LPRF      + +K    ELR  + 
Sbjct: 194  PEELERAFVHNYPDSIAYLEKALVAVHYEIDTQLKLPRF------NPEKPAVEELRELSE 247

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             GL         +KG     Y++RL  EL VI +M F  YFLIV D +++ +     +G 
Sbjct: 248  EGLR--------SKGLDQTVYQERLRHELAVIHQMGFDDYFLIVWDLLRFGRSQGYYMGM 299

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R + I+YV+N
Sbjct: 300  GRGSAVGSLVAYALDITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPKFIQYVKN 359

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            +Y    VAQI+TF +  AK A+RDV +    P  ++  L K I           A   + 
Sbjct: 360  RYRSPHVAQIVTFSTFGAKQAIRDVFKRFGTPEYELTNLTKRIG---LRDTLASAYEKNL 416

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
             FR+A  + P   +  EI++++EG  R  S HAAG+V+    L+  +P+   +  ++ +T
Sbjct: 417  AFRQAIQSRPEYRKGFEIAKRIEGQPRQTSIHAAGVVMSGEDLTNQIPI--KMGEEMNLT 474

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTK 615
            Q++   +E  GL+K DFLGL+ LT  Q+  + + ++  K + +  IP +D ET  L    
Sbjct: 475  QYDAHGVEANGLLKMDFLGLRNLTFAQRMQEAVKEKYQKDIKIEDIPLEDPETIALFAAG 534

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
             T GIFQ E +G  + L  +QP C E+I+A  SL RPG  D I  +  RK+GKEK+  I 
Sbjct: 535  NTKGIFQFEQTGAIRLLRRVQPSCFEEIVATTSLNRPGASDYIDNFVKRKHGKEKVDMID 594

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            P ++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK   EM + ++ FI G
Sbjct: 595  PSLEGILAPTYGIMLYQEQVMQVAQTFAGFSLGKADILRRAMGKKNVAEMHRMEDDFIKG 654

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A   G S   A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F    +   
Sbjct: 655  AIALGHSAEKAKQVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKVHYPDVFFDIMLNYS 714

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
              +      +  DA QF+ Q+ P ++NT     K  D +IY  +  IKG+    A  I++
Sbjct: 715  SSD------YLTDALQFDFQVAPLTINTIPYKDKFQDQKIYLGMKNIKGLPKDLAYWIID 768

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
                +PF+S+EDF  R+ ++     +L  LV  G  DCF  +R ++LQ+L N+  +A   
Sbjct: 769  ---QRPFESIEDFILRLPNQYHKLPLLTPLVELGLFDCFEKNRRKVLQNLPNLFVFA--- 822

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL-----DV 970
                 ++  ++F     +++D    E +S    + ++E EQRV+G   S HPL       
Sbjct: 823  -----DELGSLFGQANYSWTDA---EDYS---KAEKYEMEQRVIGVGLSPHPLVEIVAAS 871

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +P      +   E++   +   +IR           +T+ G  + ++  S+  K+ +  
Sbjct: 872  SQPTRPIASLSEGEQATILVEVQSIRTI---------RTKNGENMAFLQVSDLQKKMDVT 922

Query: 1031 FFP 1033
             FP
Sbjct: 923  LFP 925



 Score = 39.3 bits (90), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 15/107 (14%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L   S Y+ ++  +S+ + + +        I + D +NL+   EF ++   AG+  ++
Sbjct: 3   TQLDTKSVYTFMDSLVSIRDYIQRAKEMGYQQIGLMDIDNLYGGYEFLEECQKAGMGAVL 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVS 117
           G  L++++              P  P SI L+    +GY+ LI++ S
Sbjct: 63  GLDLEVEL--------------PAGPLSIRLIALGTKGYKHLIKISS 95


>gi|168485842|ref|ZP_02710350.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           CDC1087-00]
 gi|183571027|gb|EDT91555.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           CDC1087-00]
          Length = 1033

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 302/960 (31%), Positives = 496/960 (51%), Gaps = 103/960 (10%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLG 63

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQSVRI 131
            ++ + + D      QG        ++  L  ++ GYQ+L++L  ++M    QG+++  +
Sbjct: 64  LEMTVFVDD------QG-------VNLRFLALSSVGYQQLMKLSTAKM----QGEKTWSV 106

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              +L++I     +++            +F+  +  E          G   Y+ +     
Sbjct: 107 LSQYLEDIA----VIVP-----------YFDRVESLE---------LGCDYYIGV----- 137

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
              Y E+   +  +   LPL   N        D E   VL A+  +  +  ++ P  +  
Sbjct: 138 ---YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLRSRQ 188

Query: 252 HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               + S +  +F +  P+AL+N  ++    S+ L      LPRF      +  +    E
Sbjct: 189 DVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLK-LPRF------NPARPAVEE 241

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           LR +A  GL        + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 242 LRERAELGL--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294 GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
           IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I       ++ +
Sbjct: 354 IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKLAYE 413

Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM-YRDV 549
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+ Y D 
Sbjct: 414 G---NLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYGD- 469

Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET
Sbjct: 470 --EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMRELLAETEGIHLKIEEIDLEDKET 527

Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+
Sbjct: 528 LALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQ 587

Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
           E++  +   ++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + 
Sbjct: 588 EEVTVLDSALEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEM 647

Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
           +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F 
Sbjct: 648 RASFIQGSIEAGHTAEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFY 707

Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
              + L   N +    +  DA +   ++   S+NT     K+ +  IY  L +IKG+   
Sbjct: 708 --QVMLNSSNSD----YLIDALEAGFEVASLSINTIPYHDKIANKSIYIGLKSIKGLSKD 761

Query: 849 TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A  I+E    +P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+
Sbjct: 762 LALWIIE---HRPYSNIEDFLAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANL 818

Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
               ++V+   +   E I++ +     D +  EKF +         EQ +LG   S HPL
Sbjct: 819 ---FEFVKVLGSLFGETIYSWQDS--EDWMEQEKFYM---------EQELLGVGVSKHPL 864


>gi|225854402|ref|YP_002735914.1| DNA polymerase III DnaE [Streptococcus pneumoniae JJA]
 gi|225723770|gb|ACO19623.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae JJA]
          Length = 1033

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 305/969 (31%), Positives = 493/969 (50%), Gaps = 121/969 (12%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLG 63

Query: 73  CQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQS 128
            ++ +   D + NL+                 L  ++ GYQ+L++L  ++M    QG+++
Sbjct: 64  LEMTVFVDDQEVNLR----------------FLALSSVGYQQLMKLSTAKM----QGEKT 103

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +   +L++I     ++++           +F+  +  E          G   Y+ +  
Sbjct: 104 WSVLSQYLEDIA----VIVS-----------YFDRVESLE---------LGCDYYIGV-- 137

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 Y E+   +  +   LPL   N        D E   VL A+  +  +  ++ P  
Sbjct: 138 ------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLR 185

Query: 249 TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           +      + S +  +F +  P+AL+N  ++    S+ L      LPRF      +  +  
Sbjct: 186 SRQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLK-LPRF------NPARPA 238

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             ELR +A  GL        + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ 
Sbjct: 239 VEELRERAELGL--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFG 290

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R
Sbjct: 291 RSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYR 350

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DP 483
            + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I        
Sbjct: 351 PDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +
Sbjct: 411 AYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYI 463

Query: 544 PM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
           P+ Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I
Sbjct: 464 PLKYGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEI 520

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +
Sbjct: 521 DLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNF 580

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK+G+E++  +   ++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK 
Sbjct: 581 VARKHGQEEVTVLDSALEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKD 640

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KT
Sbjct: 641 ASAMHEMRASFIQGSIEAGHTAEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKT 700

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           HYP  F    + L   N +    +  DA +   ++   S+NT     K+ +  IY  L +
Sbjct: 701 HYPAIFY--QVMLNYSNSD----YLIDALEAGFEVASLSINTIPYHDKIANKSIYIGLKS 754

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           IKG+    A  I+E    +P+ ++EDF +++    L   +LE LV  G  D F  +R ++
Sbjct: 755 IKGLSKDLALWIIE---HRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKV 811

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVL 959
             +L N+ +                F  E G+ F D I + ++        +F  EQ +L
Sbjct: 812 FNNLANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELL 855

Query: 960 GFYFSGHPL 968
           G   S HPL
Sbjct: 856 GIGVSKHPL 864


>gi|325694254|gb|EGD36170.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK150]
          Length = 1069

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 307/1028 (29%), Positives = 493/1028 (47%), Gaps = 108/1028 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36   IQLDTKTVYSFMDSLVPIKKYVQKAKDLGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72   GCQLD-IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G  L  I  +  L +               LL   ++GY+ L+++ +   +  +  +  +
Sbjct: 96   GLDLSLIKAEKELHLR--------------LLALDSQGYRNLMKVSTLKMMGQKNWEDFQ 141

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                 L       LI+L       +D    F           T K+ FG R  + L   R
Sbjct: 142  HLFKGL------ALIVLAFDGVADLDLGMDFYVGVFPS----TPKQEFG-RPTLPLHTVR 190

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             +DR                             D E   +L A+  +  + +       P
Sbjct: 191  YFDR----------------------------GDLETLQMLRAIRENASLREIGS---LP 219

Query: 251  DH-YLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +H +L     +   F +  PE+L N  ++ R   + +      LPRF      + ++   
Sbjct: 220  NHEFLLAPDALAGAFKETFPESLANLEKLVRHAHYDINRELK-LPRF------NRERPAV 272

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             ELR ++ AGL+ R   G +        Y++RLD EL VI +M F  YFLIV D +++ +
Sbjct: 273  EELRERSEAGLKKRGLTGKL--------YQERLDQELAVIHQMGFDDYFLIVWDLLRFGR 324

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                 +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R 
Sbjct: 325  SQGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRP 384

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +    
Sbjct: 385  EFIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT-- 442

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+   
Sbjct: 443  -SAYEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL--K 499

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607
               D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D E
Sbjct: 500  YGEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYKVDIEIAEIDLEDVE 559

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G
Sbjct: 560  TLKLFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHG 619

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM +
Sbjct: 620  LEQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMHR 679

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F
Sbjct: 680  MQEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAFFKAHYPDVF 739

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
                +     +      +  DA  F+ +  P S+N      K  D +I+  L  IKG+  
Sbjct: 740  FDVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLPR 793

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N
Sbjct: 794  DLAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPN 853

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSG 965
            +                 +FA E G+     T      ++ S   +FE EQ ++G   S 
Sbjct: 854  L----------------FVFADELGSLFADTTYSWTEAQDFSDAEKFELEQSIIGVGLSD 897

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HPL      L K   + +         +  R+ A V + +  +T+KG  + ++  S+  K
Sbjct: 898  HPL----VKLAKEADQPFSWISDLTENSRARILAEVQTIKTIRTKKGENMSFLQVSDTKK 953

Query: 1026 EYEANFFP 1033
            + +   FP
Sbjct: 954  KLDVTLFP 961


>gi|253800417|ref|YP_003033418.1| error-prone DNA polymerase [Mycobacterium tuberculosis KZN 1435]
 gi|289747192|ref|ZP_06506570.1| error-prone DNA polymerase [Mycobacterium tuberculosis 02_1987]
 gi|308379492|ref|ZP_07486489.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           SUMu010]
 gi|308380670|ref|ZP_07490710.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           SUMu011]
 gi|68565552|sp|O50399|DNAE2_MYCTU RecName: Full=Error-prone DNA polymerase
 gi|13883304|gb|AAK47817.1| DNA polymerase III, alpha subunit, putative [Mycobacterium
           tuberculosis CDC1551]
 gi|253321920|gb|ACT26523.1| error-prone DNA polymerase [Mycobacterium tuberculosis KZN 1435]
 gi|289687720|gb|EFD55208.1| error-prone DNA polymerase [Mycobacterium tuberculosis 02_1987]
 gi|308356814|gb|EFP45665.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           SUMu010]
 gi|308360762|gb|EFP49613.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           SUMu011]
 gi|328460150|gb|AEB05573.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           KZN 4207]
          Length = 1098

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 281/905 (31%), Positives = 461/905 (50%), Gaps = 45/905 (4%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 61  SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 120

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ + G +L      +L  T + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 121 VRTVFGAEL------SLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 174

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
              R     L E       +LTG   G + +A        A++ L      F   R+ + 
Sbjct: 175 GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 234

Query: 186 LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE-AHDVLMAVAHSTVVSQK 243
           L  H    D  R + +  LA    + +VAT  + F        A  +    A  ++ S  
Sbjct: 235 LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 294

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                    +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +    
Sbjct: 295 GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPD---- 350

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D 
Sbjct: 351 GHTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 405

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            ++ + N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID  
Sbjct: 406 TRFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 464

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K + +  
Sbjct: 465 SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSH-- 522

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                    ADD         D   +++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 523 -----WTGQADD--------VDGIPEQVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 569

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
           P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+ +G++VDL+ + 
Sbjct: 570 PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 629

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  
Sbjct: 630 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 689

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-K 719
           Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG K
Sbjct: 690 YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 749

Query: 720 KIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           +  E M + + RF  G  + +G    +   I+E L  FA++GF +SHA ++A + + +AW
Sbjct: 750 RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 809

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIY 836
            K H+P  F AA +  +       +    DAR+  + +  P VN              + 
Sbjct: 810 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 869

Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             L A++ +G   A  ++ E +A+ PF SL D  SRV   +L+   +E+L  AGAL CFG
Sbjct: 870 LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 926

Query: 896 YSRMQ 900
            SR +
Sbjct: 927 MSRRE 931


>gi|289555649|ref|ZP_06444859.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           KZN 605]
 gi|289440281|gb|EFD22774.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           KZN 605]
          Length = 1094

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 281/905 (31%), Positives = 461/905 (50%), Gaps = 45/905 (4%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 57  SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 116

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ + G +L      +L  T + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 117 VRTVFGAEL------SLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 170

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
              R     L E       +LTG   G + +A        A++ L      F   R+ + 
Sbjct: 171 GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 230

Query: 186 LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE-AHDVLMAVAHSTVVSQK 243
           L  H    D  R + +  LA    + +VAT  + F        A  +    A  ++ S  
Sbjct: 231 LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 290

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                    +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +    
Sbjct: 291 GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPD---- 346

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D 
Sbjct: 347 GHTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 401

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            ++ + N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID  
Sbjct: 402 TRFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 460

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K + +  
Sbjct: 461 SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSH-- 518

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                    ADD         D   +++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 519 -----WTGQADD--------VDGIPEQVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 565

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
           P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+ +G++VDL+ + 
Sbjct: 566 PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 625

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  
Sbjct: 626 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 685

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-K 719
           Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG K
Sbjct: 686 YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 745

Query: 720 KIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           +  E M + + RF  G  + +G    +   I+E L  FA++GF +SHA ++A + + +AW
Sbjct: 746 RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 805

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIY 836
            K H+P  F AA +  +       +    DAR+  + +  P VN              + 
Sbjct: 806 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 865

Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             L A++ +G   A  ++ E +A+ PF SL D  SRV   +L+   +E+L  AGAL CFG
Sbjct: 866 LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 922

Query: 896 YSRMQ 900
            SR +
Sbjct: 923 MSRRE 927


>gi|309807964|ref|ZP_07701892.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
           01V1-a]
 gi|308168815|gb|EFO70905.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
           01V1-a]
          Length = 705

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/552 (41%), Positives = 330/552 (59%), Gaps = 4/552 (0%)

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           +IV D I +     I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD
Sbjct: 1   MIVWDVINYCHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPD 60

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D+D   +RR+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       ++   K
Sbjct: 61  IDLDIPDNRRNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQK 120

Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP   +      A      FR    A  S     E+++K+EGL RH S HAAG+VI D 
Sbjct: 121 AIPKSKSKITLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDM 180

Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            +++ V + ++    +PVTQ   K++E  GL+K DFLGL  LT+L  + + +   G+K+D
Sbjct: 181 SIAKTVGL-QNGSLGIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNAFNEVKMSGIKLD 239

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           +  IP DD  T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI N
Sbjct: 240 MDKIPLDDPATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKN 299

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           I  Y  RKN +EK+V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+
Sbjct: 300 IDSYIRRKNKEEKVVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAI 359

Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K   EM K    F++ A + G S + A +IFE + KF++YGFNKSH+ AY+ +SY  A
Sbjct: 360 SSKDSMEMKKIGVDFVNRAVQQGHSASAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLA 419

Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIY 836
           ++K HYP +F  A +   + + +K+ K+  D +  NI+I  P +N    +F + D   I 
Sbjct: 420 YLKVHYPKQFYVALLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIV 479

Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L +I G+       IM  +  +P  SL DF  ++D+K L+  ++ +L+ +GA D    
Sbjct: 480 TGLDSIIGLRMDFVEQIM--NLQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHK 537

Query: 897 SRMQLLQSLDNI 908
           +R  LL S +++
Sbjct: 538 NRSALLASYEDL 549


>gi|161350055|ref|NP_338003.2| error-prone DNA polymerase [Mycobacterium tuberculosis CDC1551]
 gi|161352461|ref|NP_217887.2| error-prone DNA polymerase [Mycobacterium tuberculosis H37Rv]
 gi|161511527|ref|NP_857046.2| error-prone DNA polymerase [Mycobacterium bovis AF2122/97]
 gi|298526851|ref|ZP_07014260.1| error-prone DNA polymerase [Mycobacterium tuberculosis 94_M4241A]
 gi|308232437|ref|ZP_07416048.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           SUMu001]
 gi|71151828|sp|Q7TWL9|DNAE2_MYCBO RecName: Full=Error-prone DNA polymerase
 gi|298496645|gb|EFI31939.1| error-prone DNA polymerase [Mycobacterium tuberculosis 94_M4241A]
 gi|308213944|gb|EFO73343.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           SUMu001]
 gi|323717954|gb|EGB27142.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           CDC1551A]
          Length = 1091

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 281/905 (31%), Positives = 461/905 (50%), Gaps = 45/905 (4%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 54  SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 113

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ + G +L      +L  T + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 114 VRTVFGAEL------SLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 167

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
              R     L E       +LTG   G + +A        A++ L      F   R+ + 
Sbjct: 168 GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 227

Query: 186 LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE-AHDVLMAVAHSTVVSQK 243
           L  H    D  R + +  LA    + +VAT  + F        A  +    A  ++ S  
Sbjct: 228 LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 287

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                    +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +    
Sbjct: 288 GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPD---- 343

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D 
Sbjct: 344 GHTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 398

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            ++ + N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID  
Sbjct: 399 TRFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 457

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K + +  
Sbjct: 458 SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSH-- 515

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                    ADD         D   +++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 516 -----WTGQADD--------VDGIPEQVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 562

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
           P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+ +G++VDL+ + 
Sbjct: 563 PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 622

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  
Sbjct: 623 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 682

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-K 719
           Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG K
Sbjct: 683 YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 742

Query: 720 KIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           +  E M + + RF  G  + +G    +   I+E L  FA++GF +SHA ++A + + +AW
Sbjct: 743 RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 802

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIY 836
            K H+P  F AA +  +       +    DAR+  + +  P VN              + 
Sbjct: 803 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 862

Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             L A++ +G   A  ++ E +A+ PF SL D  SRV   +L+   +E+L  AGAL CFG
Sbjct: 863 LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 919

Query: 896 YSRMQ 900
            SR +
Sbjct: 920 MSRRE 924


>gi|222153151|ref|YP_002562328.1| DNA polymerase III DnaE [Streptococcus uberis 0140J]
 gi|222113964|emb|CAR42236.1| DNA polymerase III alpha subunit [Streptococcus uberis 0140J]
          Length = 1034

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 297/964 (30%), Positives = 480/964 (49%), Gaps = 107/964 (11%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV L   + YS ++  + L +   K       +I I D +NL++A  F +     G+Q I
Sbjct: 2   FVQLDTKTVYSFMDSLIDLESYFSKAKELGYSSIGIMDKDNLYAAYHFIKGCERHGLQAI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G ++D  + D              +P I L+     GYQ L++L +++   +  ++  +
Sbjct: 62  LGLEIDYHISDQF------------IP-IFLIAKNNLGYQNLLKLSTQIMSSENVQRHFK 108

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
             L      G E +I             +F +  ++A          F    Y+ +    
Sbjct: 109 EYLD-----GLEVII------------PYFKHMEEIA----------FPFEYYIGV---- 137

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
               Y +++     ++H+  L+      +  +ED +   VL A+  +  VS  +   V  
Sbjct: 138 ----YEDTE---FPHSHK-KLIPLRTVRYFEDEDRQTLQVLHAIRDN--VSLNETAIVEG 187

Query: 251 DHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
           D   ++  ++ +IF +  P ++E   ++     +        LPRF              
Sbjct: 188 DQKFEDSQKISTIFETRFPGSIERLNKLVSGIHYQFDNQFK-LPRF-------------- 232

Query: 310 ELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              N+ V   E   A   +G   +G    +Y  RL  EL +I+ M F  YFLIV D +++
Sbjct: 233 ---NREVPAKEQLYALTKEGLEKRGLWQDNYISRLHHELTIISEMGFEDYFLIVWDLLRF 289

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +     +G GRGS AGS+ A+AL IT IDP++ +LLFERFLN +R SMPD DID     
Sbjct: 290 GRSKGYYMGMGRGSAAGSLVAFALEITGIDPVKNNLLFERFLNNERFSMPDIDIDLPDIY 349

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R E +RYV+N+YG    AQI+TF +   K ALRDV +   +P  ++  L K I       
Sbjct: 350 RMEFLRYVRNRYGTNHSAQIVTFSTFGPKQALRDVLKRFGVPEYEISHLTKKI----GFK 405

Query: 487 VSLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            SL ++ D++  FR+   +     +  +I++++EG  R  S HAAGIV+ D  L+  +P+
Sbjct: 406 DSLHSVYDNNISFRQTIASRLEYQKAFDIAKRIEGNPRQTSIHAAGIVMSDSNLTDFIPL 465

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
            +    ++ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+  G  + +  I  +
Sbjct: 466 KQG--DEMMITQYDAPSVEANGLLKMDFLGLRNLTFVQKMKEKVAKDFGKNIIIEEIDLE 523

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D +T  L     T GIFQ E SG    L+ ++P   E+I+A  SL RPG  D    +  R
Sbjct: 524 DPKTLELFAKGDTKGIFQFEQSGAISLLKRIKPVKFEEIVATTSLNRPGASDYTSNFIKR 583

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +NGKE I  I P+I P+L+ T G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK   E
Sbjct: 584 RNGKETIDLIDPIIAPILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKKISE 643

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M K +  F+ GA   G S+  A  +F  + KFA YGFN+SHA AY+ +++Q A+ K HYP
Sbjct: 644 MKKLESEFLEGARALGRSEETAKLLFNRMEKFAGYGFNRSHAYAYSALAFQLAYFKVHYP 703

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             F    M     +      +  DA      ++P S+N+   + KV    I   +  IK 
Sbjct: 704 SVFFDVIMNYSTSD------YISDALDSEFNVVPLSINSIPFNDKVEGRTILMGMKNIKH 757

Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
           +    A  I+EA   +PF S+E+F +++  K   + +LE+L+  G  D F  +R ++LQ+
Sbjct: 758 LPRDLAYWIIEA---RPFTSIENFLTQLPDKYQKKEILEALISVGLFDVFEKNRKKVLQN 814

Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            + +  + + +         ++FA     +++    E FS   SS ++  E+  +G   S
Sbjct: 815 YEGLLVFVKEL--------GSLFADSSFNWTE---CEDFS---SSEKYRMEEEYIGIGLS 860

Query: 965 GHPL 968
            HPL
Sbjct: 861 QHPL 864


>gi|289755502|ref|ZP_06514880.1| DNA polymerase III, alpha subunit [Mycobacterium tuberculosis
           EAS054]
 gi|289696089|gb|EFD63518.1| DNA polymerase III, alpha subunit [Mycobacterium tuberculosis
           EAS054]
          Length = 1005

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 281/905 (31%), Positives = 461/905 (50%), Gaps = 45/905 (4%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 54  SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 113

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ + G +L      +L  T + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 114 VRTVFGAEL------SLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 167

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
              R     L E       +LTG   G + +A        A++ L      F   R+ + 
Sbjct: 168 GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 227

Query: 186 LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE-AHDVLMAVAHSTVVSQK 243
           L  H    D  R + +  LA    + +VAT  + F        A  +    A  ++ S  
Sbjct: 228 LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 287

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                    +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +    
Sbjct: 288 GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPD---- 343

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D 
Sbjct: 344 GHTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 398

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            ++ + N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID  
Sbjct: 399 TRFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 457

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K + +  
Sbjct: 458 SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSH-- 515

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                    ADD         D   +++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 516 -----WTGQADD--------VDGIPEQVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 562

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
           P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+ +G++VDL+ + 
Sbjct: 563 PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 622

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  
Sbjct: 623 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 682

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-K 719
           Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG K
Sbjct: 683 YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 742

Query: 720 KIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           +  E M + + RF  G  + +G    +   I+E L  FA++GF +SHA ++A + + +AW
Sbjct: 743 RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 802

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIY 836
            K H+P  F AA +  +       +    DAR+  + +  P VN              + 
Sbjct: 803 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 862

Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             L A++ +G   A  ++ E +A+ PF SL D  SRV   +L+   +E+L  AGAL CFG
Sbjct: 863 LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 919

Query: 896 YSRMQ 900
            SR +
Sbjct: 920 MSRRE 924


>gi|121639297|ref|YP_979521.1| error-prone DNA polymerase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224991794|ref|YP_002646483.1| error-prone DNA polymerase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|121494945|emb|CAL73431.1| Probable dna polymerase III (alpha chain) dnaE2 [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|224774909|dbj|BAH27715.1| error-prone DNA polymerase [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 1079

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 281/905 (31%), Positives = 461/905 (50%), Gaps = 45/905 (4%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 42  SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 101

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ + G +L      +L  T + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 102 VRTVFGAEL------SLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 155

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
              R     L E       +LTG   G + +A        A++ L      F   R+ + 
Sbjct: 156 GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 215

Query: 186 LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE-AHDVLMAVAHSTVVSQK 243
           L  H    D  R + +  LA    + +VAT  + F        A  +    A  ++ S  
Sbjct: 216 LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 275

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                    +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +    
Sbjct: 276 GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPD---- 331

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D 
Sbjct: 332 GHTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 386

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            ++ + N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID  
Sbjct: 387 TRFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 445

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K + +  
Sbjct: 446 SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSH-- 503

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                    ADD         D   +++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 504 -----WTGQADD--------VDGIPEQVIDLATQIRSLPRHLGIHSGGMVICDRPIADVC 550

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
           P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+ +G++VDL+ + 
Sbjct: 551 PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 610

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  
Sbjct: 611 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 670

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-K 719
           Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG K
Sbjct: 671 YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 730

Query: 720 KIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           +  E M + + RF  G  + +G    +   I+E L  FA++GF +SHA ++A + + +AW
Sbjct: 731 RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 790

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIY 836
            K H+P  F AA +  +       +    DAR+  + +  P VN              + 
Sbjct: 791 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 850

Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             L A++ +G   A  ++ E +A+ PF SL D  SRV   +L+   +E+L  AGAL CFG
Sbjct: 851 LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 907

Query: 896 YSRMQ 900
            SR +
Sbjct: 908 MSRRE 912


>gi|148984631|ref|ZP_01817899.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP3-BS71]
 gi|147923022|gb|EDK74137.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP3-BS71]
 gi|301799883|emb|CBW32460.1| DNA polymerase III alpha subunit [Streptococcus pneumoniae OXC141]
          Length = 1033

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 305/969 (31%), Positives = 491/969 (50%), Gaps = 121/969 (12%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLG 63

Query: 73  CQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQS 128
            ++ +   D + NL+                 L  ++ GYQ+L++L  ++M    QG+++
Sbjct: 64  LEMTVFVDDQEVNLR----------------FLALSSVGYQQLMKLSTAKM----QGEKT 103

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +   +L++I     +++            +F+  +  E          G   Y+ +  
Sbjct: 104 WSVLSQYLEDIA----VIVP-----------YFDRVESLE---------LGCDYYIGV-- 137

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 Y E+   +  +   LPL   N        D E   VL A+  +  +  ++ P  
Sbjct: 138 ------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLR 185

Query: 249 TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           +      + S +  +F +  P+AL+N  ++    S+ L +    LPRF            
Sbjct: 186 SRQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDISLK-LPRF------------ 232

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            N  R  AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ 
Sbjct: 233 -NPAR-PAVEELRERAELGFVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFG 290

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R
Sbjct: 291 RSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYR 350

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DP 483
            + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I        
Sbjct: 351 PDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +
Sbjct: 411 AYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYI 463

Query: 544 PM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
           P+ Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I
Sbjct: 464 PLKYGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEI 520

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +
Sbjct: 521 DLEDKETLDLFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNF 580

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK+G+E++  +   ++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK 
Sbjct: 581 VARKHGQEEVTVLDSALEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKD 640

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              M + +  FI G+ + G +   +  +F+++ KFA YGFN+SHA AY+ +++Q A+ KT
Sbjct: 641 ASAMHEMRASFIQGSIEAGHTAEKSEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKT 700

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           HYP  F    + L   N +    +  DA +   ++   S+NT     K+ +  IY  L +
Sbjct: 701 HYPAIFY--QVMLNYSNSD----YLIDALEAGFEVASLSINTIPYHDKIANKSIYIGLKS 754

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           IKG+    A  I+E    +P+ ++EDF +++    L   +LE LV  G  D F  +R ++
Sbjct: 755 IKGLSKDLALWIIE---HRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKV 811

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVL 959
             +L N+ +                F  E G+ F D I + ++        +F  EQ +L
Sbjct: 812 FNNLANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELL 855

Query: 960 GFYFSGHPL 968
           G   S HPL
Sbjct: 856 GIGVSKHPL 864


>gi|225870382|ref|YP_002746329.1| DNA polymerase III alpha subunit [Streptococcus equi subsp. equi
           4047]
 gi|225699786|emb|CAW93588.1| DNA polymerase III alpha subunit [Streptococcus equi subsp. equi
           4047]
          Length = 1036

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 301/961 (31%), Positives = 471/961 (49%), Gaps = 99/961 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F  L   + YS ++  + L++   +       AI I D +NL+ A  F +     G+QPI
Sbjct: 2   FAQLDTKTVYSFMDSLIDLDHYFKQAKRLGYQAIGIMDQDNLYGAYHFIKGCQRHGLQPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G ++ I +++                ++ L+     GYQ+L++L +       G   + 
Sbjct: 62  LGLEVAITVKEQ-------------ALTLKLVAKNDTGYQQLLKLSTEKM---SGDLDLD 105

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
             + +L     EG+ ++   S    D               L F    G     +L +  
Sbjct: 106 TLVQYL-----EGIAVIVPFSQSLRDLG-------------LPFDYFIGIDEASDLSKID 147

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             +R                L+      +    + E   +L A+  +  +S  D   V  
Sbjct: 148 STER----------------LIPLRTVRYFDNAETETLQMLHAIRDN--ISLADTALVAK 189

Query: 251 DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
           D +L    EM +IF +  PEAL N V +    ++        LPRF      +  K  + 
Sbjct: 190 DQFLAPCQEMTAIFQEKCPEALVNLVNLTASIAYHFDTDLK-LPRF------NRDKPAKE 242

Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
           ELR    +GL          K    + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243 ELRELTESGLR--------EKQLWKEPYQFRLAEELAIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
               +G GRGS AGS+ AY+L IT IDP++ +LLFERFLN +R SMPD DID     R E
Sbjct: 295 RGYYMGMGRGSAAGSLVAYSLRITGIDPVKNNLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAHPVS 488
            + YV+++YG E  AQI+TF +   K A+RDV +   +P  ++  L K I   D    V 
Sbjct: 355 FLHYVRDRYGSEHSAQIVTFSTFGPKQAVRDVFKRFGVPEYELTSLTKKIGFKDTLSTVY 414

Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            + IA    FR+   +     +  EI++++EG  R  S HAAGIV+ D  L+  +P+ + 
Sbjct: 415 EKNIA----FRQTINSRLEFQKAFEIAKRIEGNPRQTSIHAAGIVMSDDHLTNHIPLKKG 470

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607
              D+ VTQ++   +E  GL+K DFLGL+ LTL+QK  +  +   G+ +D+  I  +D E
Sbjct: 471 --EDMMVTQYDASAVEANGLLKMDFLGLRNLTLVQKMQEKVVNDYGLSIDIEAINLEDPE 528

Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
           T  L     T GIFQ E  G    L+ ++P   E+I+A  SL RPG  D    +  R+ G
Sbjct: 529 TIALFARGDTKGIFQFEQHGAISLLKRIKPTSFEEIVATTSLNRPGASDYTQNFIKRRQG 588

Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
           +E I  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM +
Sbjct: 589 QENIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLVEMQR 648

Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +E F++GA   G S+  A  +F  + KFA YGFN+SHA AYA +++Q A+ K HYP  F
Sbjct: 649 MQEDFLTGARALGRSEETARLLFARMEKFAGYGFNRSHAFAYAALAFQLAYFKAHYPEVF 708

Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
               M     +      +  DA  F  +    ++NT   + K+  ++IY  L  IKG+  
Sbjct: 709 FDVMMNYSSSD------YITDALDFGFEAAQVTINTIPFNDKIERHKIYMGLKNIKGLPR 762

Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             +  I+E   ++PF S+E F   +  K      LE L+  G  D F  +R +++ +L+ 
Sbjct: 763 EFSYWIIE---NRPFTSVESFLCSIPEKYQKTSFLEPLIKIGLFDGFEKNRQKIINNLEG 819

Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
           +  +         N+  ++FA    ++   +  E +S   ++ ++  EQ +LG   S HP
Sbjct: 820 LLTF--------VNELGSLFADSSFSW---VETEDYS---AAEKYYFEQDLLGVGMSKHP 865

Query: 968 L 968
           L
Sbjct: 866 L 866


>gi|148663233|ref|YP_001284756.1| error-prone DNA polymerase [Mycobacterium tuberculosis H37Ra]
 gi|148824579|ref|YP_001289333.1| error-prone DNA polymerase [Mycobacterium tuberculosis F11]
 gi|215405390|ref|ZP_03417571.1| error-prone DNA polymerase [Mycobacterium tuberculosis 02_1987]
 gi|215413269|ref|ZP_03421958.1| error-prone DNA polymerase [Mycobacterium tuberculosis 94_M4241A]
 gi|219559445|ref|ZP_03538521.1| error-prone DNA polymerase [Mycobacterium tuberculosis T17]
 gi|260188426|ref|ZP_05765900.1| error-prone DNA polymerase [Mycobacterium tuberculosis CPHL_A]
 gi|260202555|ref|ZP_05770046.1| error-prone DNA polymerase [Mycobacterium tuberculosis T46]
 gi|260206735|ref|ZP_05774226.1| error-prone DNA polymerase [Mycobacterium tuberculosis K85]
 gi|289444974|ref|ZP_06434718.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           T46]
 gi|289449069|ref|ZP_06438813.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289571607|ref|ZP_06451834.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           T17]
 gi|289576104|ref|ZP_06456331.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           K85]
 gi|294995861|ref|ZP_06801552.1| error-prone DNA polymerase [Mycobacterium tuberculosis 210]
 gi|297636030|ref|ZP_06953810.1| error-prone DNA polymerase [Mycobacterium tuberculosis KZN 4207]
 gi|297733029|ref|ZP_06962147.1| error-prone DNA polymerase [Mycobacterium tuberculosis KZN R506]
 gi|313660361|ref|ZP_07817241.1| error-prone DNA polymerase [Mycobacterium tuberculosis KZN V2475]
 gi|2661649|emb|CAA15755.1| PROBABLE DNA POLYMERASE III (ALPHA CHAIN) DNAE2 (DNA
           NUCLEOTIDYLTRANSFERASE) [Mycobacterium tuberculosis
           H37Rv]
 gi|31620149|emb|CAD95567.1| PROBABLE DNA POLYMERASE III (ALPHA CHAIN) DNAE2 (DNA
           NUCLEOTIDYLTRANSFERASE) [Mycobacterium bovis AF2122/97]
 gi|148507385|gb|ABQ75194.1| DNA polymerase III subunit alpha DnaE2 [Mycobacterium tuberculosis
           H37Ra]
 gi|148723106|gb|ABR07731.1| DNA polymerase III alpha subunit dnaE2 (DNA nucleotidyltransferase)
           [Mycobacterium tuberculosis F11]
 gi|289417893|gb|EFD15133.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           T46]
 gi|289422027|gb|EFD19228.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289540535|gb|EFD45113.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           K85]
 gi|289545361|gb|EFD49009.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           T17]
 gi|326905210|gb|EGE52143.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           W-148]
          Length = 1079

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 281/905 (31%), Positives = 461/905 (50%), Gaps = 45/905 (4%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 42  SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 101

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ + G +L      +L  T + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 102 VRTVFGAEL------SLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 155

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
              R     L E       +LTG   G + +A        A++ L      F   R+ + 
Sbjct: 156 GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 215

Query: 186 LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE-AHDVLMAVAHSTVVSQK 243
           L  H    D  R + +  LA    + +VAT  + F        A  +    A  ++ S  
Sbjct: 216 LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 275

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                    +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +    
Sbjct: 276 GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPD---- 331

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D 
Sbjct: 332 GHTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 386

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            ++ + N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID  
Sbjct: 387 TRFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 445

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K + +  
Sbjct: 446 SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSH-- 503

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                    ADD         D   +++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 504 -----WTGQADD--------VDGIPEQVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 550

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
           P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+ +G++VDL+ + 
Sbjct: 551 PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 610

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  
Sbjct: 611 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 670

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-K 719
           Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG K
Sbjct: 671 YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 730

Query: 720 KIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           +  E M + + RF  G  + +G    +   I+E L  FA++GF +SHA ++A + + +AW
Sbjct: 731 RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 790

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIY 836
            K H+P  F AA +  +       +    DAR+  + +  P VN              + 
Sbjct: 791 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 850

Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             L A++ +G   A  ++ E +A+ PF SL D  SRV   +L+   +E+L  AGAL CFG
Sbjct: 851 LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 907

Query: 896 YSRMQ 900
            SR +
Sbjct: 908 MSRRE 912


>gi|167966837|ref|ZP_02549114.1| error-prone DNA polymerase [Mycobacterium tuberculosis H37Ra]
          Length = 955

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 281/905 (31%), Positives = 461/905 (50%), Gaps = 45/905 (4%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 42  SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 101

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ + G +L      +L  T + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 102 VRTVFGAEL------SLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 155

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
              R     L E       +LTG   G + +A        A++ L      F   R+ + 
Sbjct: 156 GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 215

Query: 186 LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE-AHDVLMAVAHSTVVSQK 243
           L  H    D  R + +  LA    + +VAT  + F        A  +    A  ++ S  
Sbjct: 216 LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 275

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                    +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +    
Sbjct: 276 GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPD---- 331

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D 
Sbjct: 332 GHTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 386

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            ++ + N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID  
Sbjct: 387 TRFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 445

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K + +  
Sbjct: 446 SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSH-- 503

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                    ADD         D   +++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 504 -----WTGQADD--------VDGIPEQVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 550

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
           P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+ +G++VDL+ + 
Sbjct: 551 PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 610

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  
Sbjct: 611 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 670

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-K 719
           Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG K
Sbjct: 671 YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 730

Query: 720 KIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           +  E M + + RF  G  + +G    +   I+E L  FA++GF +SHA ++A + + +AW
Sbjct: 731 RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 790

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIY 836
            K H+P  F AA +  +       +    DAR+  + +  P VN              + 
Sbjct: 791 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 850

Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             L A++ +G   A  ++ E +A+ PF SL D  SRV   +L+   +E+L  AGAL CFG
Sbjct: 851 LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 907

Query: 896 YSRMQ 900
            SR +
Sbjct: 908 MSRRE 912


>gi|306833377|ref|ZP_07466504.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus bovis
            ATCC 700338]
 gi|304424147|gb|EFM27286.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus bovis
            ATCC 700338]
          Length = 1035

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 301/1032 (29%), Positives = 505/1032 (48%), Gaps = 115/1032 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   +    +     + I D +NL++A  F ++A    +QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLEGYVKAAKSLGYQTVGIMDKDNLYAAFHFIEEAKKQSLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L   +++ L +             + LL     GY+ L+++ S+            
Sbjct: 62   VGLELSFAVEETLSL------------KLYLLAQDTTGYKNLMKISSKQ----------- 98

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                           M +G   G +     FN        +  F++L    L        
Sbjct: 99   ---------------MSSGIQLGEL-----FNYLTGVAIVVPYFEELEALSL-------- 130

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             +D Y    V      +E P+       +    + EA  +L A+  +  +S KD P    
Sbjct: 131  PFDYYIGVDVNSPQKAYEKPIFPLYTVRYFETNEVEALHMLHAIRDN--ISLKDAPPAPQ 188

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               L     +   F +  P+ALEN  ++     +        LPRF      + QK  + 
Sbjct: 189  GQNLLACDILTQAFRETFPQALENQEKLISNIHYEFDTDLK-LPRF------NRQKLAQE 241

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL  +  AGL         AK      Y++RL+ EL++I +M F  YFLIV D +++ + 
Sbjct: 242  ELIERTEAGLR--------AKNLWLPAYQERLEKELSIIHKMGFDDYFLIVWDLLRFGRS 293

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            +   +G GRGS AGS+ +YAL IT IDP++ +LLFERFLN +R SMPD DID     R E
Sbjct: 294  HGYYMGMGRGSAAGSLVSYALDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYRSE 353

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             + YV+++YG    AQI+TF +  AK A+RDV +    P  ++  + K I    +   +L
Sbjct: 354  FLHYVRDRYGSLHSAQIVTFSTFGAKQAIRDVFKRFGAPEHELTNITKKI----SFRDTL 409

Query: 490  QAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             ++ D +  FR+   +     +   I++++EG  R  S HAAG+V+ D  L++ +P+   
Sbjct: 410  TSVYDKNLSFRQIINSKIEYQKAFAIAKRIEGNPRQTSIHAAGVVMSDDNLTEHIPL--K 467

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D+ +TQ++ + +E  GL+K DFLGL+ LT +Q+  + +A+  GV +D+  I  +D +
Sbjct: 468  AGEDMMITQYDAQAVEANGLLKMDFLGLRNLTFVQRMQEKVAKDYGVTIDIKSIDLEDKK 527

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T GIFQ E +G    L+ +QP   EDI+A  SL RPG  D    +  R+ G
Sbjct: 528  TLELFAAGKTKGIFQFEQAGAINLLKRIQPCRFEDIVATTSLNRPGASDYTENFIKRRFG 587

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E++  I PL+  +L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  ++M K
Sbjct: 588  QEEVDLIDPLVASILEPTYGIMLYQEQVMQIAQIYAGFTLGKADLLRRAMSKKKVDDMQK 647

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +  F+ GA + G     A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F
Sbjct: 648  MESDFLEGAQQLGRPLEAAKDLFSRMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVF 707

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
                +     +      +  DA     ++    +NT   + K+ D  IY  L  ++GV  
Sbjct: 708  YDIMLNYSSAD------YITDALDSQFKVKKIDINTVPYNNKISDGYIYLGLKNLRGVPR 761

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                 I+E   ++PF+S+EDF +R+        ++  LV  GA D F  +R +++++L+ 
Sbjct: 762  DLCYWIIE---NRPFNSIEDFLTRLPENYQKMDMITPLVEVGAFDKFDRNRRKIIENLEP 818

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN--SSVRFENEQRVLGFYFSG 965
            +                 IF +E G+     +      E+  ++ ++  EQ +LG   S 
Sbjct: 819  L----------------FIFVNELGSLFADTSYSWIETEDYPNAEKYRLEQSLLGVGISP 862

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ----KKTRKGSRIGWVTFS 1021
            HPL      + +   KG+  ++A ++ N    A ++V   Q    +   KG ++ +++ +
Sbjct: 863  HPL----LEIARQSTKGF-TALADLQENT--EATILVELNQIRVIRTKTKGEQMAFLSVT 915

Query: 1022 EPAKEYEANFFP 1033
            +  K+++   FP
Sbjct: 916  DTQKKFDVTLFP 927


>gi|308373723|ref|ZP_07433455.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           SUMu005]
 gi|308336574|gb|EFP25425.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           SUMu005]
          Length = 1098

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 280/905 (30%), Positives = 460/905 (50%), Gaps = 45/905 (4%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 61  SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 120

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ + G +L      +L  T + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 121 VRTVFGAEL------SLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 174

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
              R     L E       +LTG   G + +A        A++ L      F   R+ + 
Sbjct: 175 GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 234

Query: 186 LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE-AHDVLMAVAHSTVVSQK 243
           L  H    D  R + +  LA    + +V T  + F        A  +    A  ++ S  
Sbjct: 235 LTHHGHPLDDERNAALAGLAPRFGVGIVTTTGAHFADPSRGRLAMAMAAIRARRSLDSAA 294

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                    +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +    
Sbjct: 295 GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPD---- 350

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D 
Sbjct: 351 GHTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 405

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            ++ + N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID  
Sbjct: 406 TRFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 464

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K + +  
Sbjct: 465 SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSH-- 522

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                    ADD         D   +++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 523 -----WTGQADD--------VDGIPEQVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 569

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
           P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+ +G++VDL+ + 
Sbjct: 570 PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 629

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  
Sbjct: 630 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 689

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-K 719
           Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG K
Sbjct: 690 YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 749

Query: 720 KIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           +  E M + + RF  G  + +G    +   I+E L  FA++GF +SHA ++A + + +AW
Sbjct: 750 RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 809

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIY 836
            K H+P  F AA +  +       +    DAR+  + +  P VN              + 
Sbjct: 810 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 869

Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             L A++ +G   A  ++ E +A+ PF SL D  SRV   +L+   +E+L  AGAL CFG
Sbjct: 870 LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 926

Query: 896 YSRMQ 900
            SR +
Sbjct: 927 MSRRE 931


>gi|308371322|ref|ZP_07424578.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           SUMu003]
 gi|308372518|ref|ZP_07428948.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           SUMu004]
 gi|308376093|ref|ZP_07446045.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           SUMu007]
 gi|308377322|ref|ZP_07441858.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           SUMu008]
 gi|308378295|ref|ZP_07482143.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           SUMu009]
 gi|308329123|gb|EFP17974.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           SUMu003]
 gi|308332959|gb|EFP21810.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           SUMu004]
 gi|308344313|gb|EFP33164.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           SUMu007]
 gi|308348245|gb|EFP37096.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           SUMu008]
 gi|308352970|gb|EFP41821.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           SUMu009]
          Length = 1091

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 280/905 (30%), Positives = 460/905 (50%), Gaps = 45/905 (4%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 54  SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 113

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ + G +L      +L  T + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 114 VRTVFGAEL------SLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 167

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
              R     L E       +LTG   G + +A        A++ L      F   R+ + 
Sbjct: 168 GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 227

Query: 186 LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE-AHDVLMAVAHSTVVSQK 243
           L  H    D  R + +  LA    + +V T  + F        A  +    A  ++ S  
Sbjct: 228 LTHHGHPLDDERNAALAGLAPRFGVGIVTTTGAHFADPSRGRLAMAMAAIRARRSLDSAA 287

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                    +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +    
Sbjct: 288 GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPD---- 343

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D 
Sbjct: 344 GHTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 398

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            ++ + N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID  
Sbjct: 399 TRFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 457

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K + +  
Sbjct: 458 SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSH-- 515

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                    ADD         D   +++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 516 -----WTGQADD--------VDGIPEQVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 562

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
           P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+ +G++VDL+ + 
Sbjct: 563 PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 622

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  
Sbjct: 623 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 682

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-K 719
           Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG K
Sbjct: 683 YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 742

Query: 720 KIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           +  E M + + RF  G  + +G    +   I+E L  FA++GF +SHA ++A + + +AW
Sbjct: 743 RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 802

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIY 836
            K H+P  F AA +  +       +    DAR+  + +  P VN              + 
Sbjct: 803 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 862

Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             L A++ +G   A  ++ E +A+ PF SL D  SRV   +L+   +E+L  AGAL CFG
Sbjct: 863 LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 919

Query: 896 YSRMQ 900
            SR +
Sbjct: 920 MSRRE 924


>gi|108798154|ref|YP_638351.1| error-prone DNA polymerase [Mycobacterium sp. MCS]
 gi|119867250|ref|YP_937202.1| error-prone DNA polymerase [Mycobacterium sp. KMS]
 gi|108768573|gb|ABG07295.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium sp.
           MCS]
 gi|119693339|gb|ABL90412.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium sp.
           KMS]
          Length = 1099

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 279/905 (30%), Positives = 456/905 (50%), Gaps = 44/905 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS+YS L+GA +   ++++ A     AIA+TD + L+  + F++ A    ++ +
Sbjct: 61  YAELHAHSAYSFLDGAGTPEELVEEAARLDLRAIALTDHDGLYGVVRFAEAARELDMRTV 120

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L + M      + + + P P  P +++L    EGY+RL   +++ +L    K   R
Sbjct: 121 FGAELSLGMG---ARSARNEVPDPPGPHLLVLARGPEGYRRLSREIAKAHLAGGEKGKPR 177

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                L E       +LTG   G + +A        AEK L      FG DR+ V L  H
Sbjct: 178 YDYDTLTEAAGGHWHILTGCRKGHVRQALSEGGPAAAEKALADLVDRFGRDRVSVELTHH 237

Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPR 247
               D  R + + +LA    L +VAT  + F           + A+ A  ++        
Sbjct: 238 GHPLDDERNAALAELAPRFGLTVVATTAAHFAEPSRGRLAMAMGAIRARHSIDEAAGYLA 297

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--K 305
                +L++  EM  +F+  P+ +    ++  +C+F L + AP LP F      D+    
Sbjct: 298 PLGGSHLRSGEEMARLFAHCPQVVTAAADLGEQCAFGLALIAPKLPPF------DVPAGH 351

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            E++ LR+  + G   R      A   +AQ     ++ EL VI ++ F GYFL+V D  +
Sbjct: 352 TEDSWLRHLVMLGARNRYGPPERAPQAYAQ-----IEHELRVIEKLSFPGYFLVVHDITR 406

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           + K+N I +  GRGS A S   YAL +T++DP+   LLFERFL+P R   PD DID   D
Sbjct: 407 FCKENGI-LAQGRGSAANSAVCYALGVTNVDPVANELLFERFLSPARDGPPDIDIDIESD 465

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            R++ I+YV ++YG +  AQ+    + + ++A+RD+ RAL     Q D   K +      
Sbjct: 466 LREQAIQYVYDRYGRDYAAQVANVITYRGRSAIRDMARALGFSQGQQDAWSKQLSK---- 521

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                 +AD        + +P VD  L+IS     L RH   H+ G+VI DRP++ + P+
Sbjct: 522 ---WNGLADSPDIEG--IPEPVVDLALQISN----LPRHMGIHSGGMVICDRPIADVCPV 572

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
                ++  V Q++       GL+KFD LGL  L+ L   +D + + +G+ VDL+ +   
Sbjct: 573 EWARMANRSVLQWDKDDCAAIGLVKFDMLGLGMLSALHYCIDLVREHKGLDVDLAKLDLS 632

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
           +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  Y 
Sbjct: 633 EPAVYEMLQRADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHPYI 692

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKI 721
            R+NG+E +   HP +   L++T GV ++QEQ+MQ+A   +G++ +EAD LRRAMG K+ 
Sbjct: 693 KRRNGEEPVTYDHPSMANALRKTLGVPLFQEQLMQLAVDCAGFTAAEADQLRRAMGSKRS 752

Query: 722 KEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            E+M + + RF  G   ++GI+  +A  I++ L  FA++GF +SH+ ++A + + ++W K
Sbjct: 753 TEKMRRLRGRFYDGMRQRHGITGEVADRIYDKLEAFANFGFPESHSLSFASLVFYSSWFK 812

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC--VDFKVGDNRIYYS 838
            H+P  F AA +  +       +    DAR+  + +  P VN        +     +   
Sbjct: 813 LHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAYATLESAGTEVRLG 872

Query: 839 LAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L A++ +G   A  I+E   A+ PF+SL D   RV   +L+    E+L  AGAL CFG +
Sbjct: 873 LGAVRHIGDDLAERIVEERKANGPFESLLDLTGRV---QLSVPQTEALATAGALGCFGVT 929

Query: 898 RMQLL 902
           R + L
Sbjct: 930 RREGL 934


>gi|304373272|ref|YP_003856481.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
 gi|304309463|gb|ADM21943.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
          Length = 979

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 315/988 (31%), Positives = 505/988 (51%), Gaps = 124/988 (12%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           ++L  ++ YS L+  + ++++++     Q   + ITD +N+F   +F  +  A  I PII
Sbjct: 5   INLHTNTEYSFLQSTIKISSLIEYARQHQLKHLVITDRDNMFGVAKFYNECKANNINPII 64

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G  L+I                         +  A+ YQ  + L     LL   K S + 
Sbjct: 65  GLDLEIKS--------------------FRFILIAKNYQGFLHLS----LLSSKKMSFKE 100

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               ++E+  E +I++     G   +           K++L F   F             
Sbjct: 101 I--EIEELDNENIIVIDHPKLGLYSKT----------KKMLEFSNYFVHS---------- 138

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP----- 246
                +S++    Y      V T N L+ SEE Y    +L  +A S   ++KD       
Sbjct: 139 ----NDSKIANSVY------VQTRNVLYASEEKY--LKILHKIADS---AEKDEAVDFID 183

Query: 247 ------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                 +V      +  S + +I  + PEA                    ILP F + E 
Sbjct: 184 FEMWYEQVDEQIIQRTNSLVENILIEFPEA------------------NMILPDF-KNEA 224

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
           +    E   +L  K VA  +        A+  +  ++++RL +E N+I  +KFS YFLI+
Sbjct: 225 NLNPDEFLQQLLEKQVAKKK--------AEFKNFPNFKERLVYEFNIIKSLKFSNYFLII 276

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            DF++WA+KNNI +GPGRGS +GS+ +Y L IT ++PL+F L+FERFLNP R+SMPD DI
Sbjct: 277 WDFLRWARKNNILIGPGRGSSSGSLISYLLNITQVNPLKFDLIFERFLNPKRISMPDIDI 336

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ-MPYSQVDRLCKLI 479
           D   +RRDE+I+Y+Q KYG+E  A IITF +  AK A  DV + L+ +  + V  + K I
Sbjct: 337 DIQDNRRDELIQYIQQKYGYENTALIITFSTFGAKMAFADVAKKLKNVSPTDVLAITKHI 396

Query: 480 PNDPAHPVSL-QAIADDSRFR-----EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
           P      +SL QA   ++ FR     +    +     + EI++ LEG+ R + THAAGIV
Sbjct: 397 P----FGLSLEQAYKTNANFRAYVEKQDNNGNFLYKEIFEIAKFLEGMPRQSGTHAAGIV 452

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR- 592
           I D+PL   VP     +     TQF+ +++E+  L+K D LGLK LT+++  ++ + Q  
Sbjct: 453 IADKPLYNYVPTLIS-KDKYNQTQFSAEFLEQFSLLKIDLLGLKNLTVVKGIINSINQHS 511

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            +  + + IP  D  T  LLT   T+GIFQLES GM   L  +    I+D++A++SL+RP
Sbjct: 512 NLNFNFNSIPIFDKGTNELLTRGKTVGIFQLESPGMANTLRKVGISSIDDVVAVISLFRP 571

Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           GPI NI +Y  RK  +     I    + +LK T G+IIYQEQ+MQI Q ++G+  + +D+
Sbjct: 572 GPIKNIPLYAQRKKNEADYEIISQEYNDILKSTYGIIIYQEQIMQICQTIAGFDFATSDL 631

Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           +RRA+ KK  +++ K K+ FI G    G S  +   IF+ +  FA+YGFNKSHA AYA +
Sbjct: 632 IRRAISKKEAKKLYKAKQLFIQGGLNKGYSAVVLEKIFQQIEYFAEYGFNKSHAVAYATL 691

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN--TPCVDFKV 830
           +Y+ A++K +YP+EF +  +T E  +   I KF ++A Q  I+   P++N  T  V ++ 
Sbjct: 692 AYKMAYLKQNYPLEFYSFLITNEEGSQTNIAKFIKEA-QPAIKFKKPNINISTTSVVYER 750

Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             + IY  L  IKG+G+   + I+E  + +  +    DF  R+    ++  ++  L+ +G
Sbjct: 751 KTSTIYLPLILIKGLGSVACQKILEERNKNGLYKDFLDFVIRMKIINISNTIITLLINSG 810

Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            L  FG +   LL++L   + Y   +     ++++N++  +      K  LE    +N  
Sbjct: 811 TLSEFG-NIPTLLENLVTAESYKICI---LEDENKNLYC-DYSLIPGKFELE-IKEDNLE 864

Query: 950 VRFENEQRVLGFYFSG--HPLDVYKPIL 975
           +  ENE+++LG  FS     +D+  P+L
Sbjct: 865 LTIENEEKLLGMSFSSFDQNIDLKNPVL 892


>gi|225856560|ref|YP_002738071.1| DNA polymerase III DnaE [Streptococcus pneumoniae P1031]
 gi|225724719|gb|ACO20571.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae P1031]
          Length = 1033

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 307/969 (31%), Positives = 495/969 (51%), Gaps = 121/969 (12%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLG 63

Query: 73  CQLDI--DMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQS 128
            ++ +  D Q+ NL+        F ++ S+        GYQ+L++L  ++M    QG+++
Sbjct: 64  LEMTVFVDEQEVNLR--------FLSLSSV--------GYQQLMKLSTAKM----QGEKT 103

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +   +L++I     +++            +F+  +  E          G   Y+ +  
Sbjct: 104 WSVLSQYLEDIA----VIVP-----------YFDRVESLE---------LGCDYYIGV-- 137

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 Y E+   +  +   LPL   N        D E   VL A+  +  +  ++ P  
Sbjct: 138 ------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLR 185

Query: 249 TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           +      + S +  +F +  P+AL+N  ++    S+ L      LPRF      +  +  
Sbjct: 186 SRQDVFISASSLEKLFQECFPQALDNLEKLISGISYDLDTSLK-LPRF------NPARPA 238

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             ELR +A  GL        + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ 
Sbjct: 239 VEELRERAELGL--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFG 290

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R
Sbjct: 291 RSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYR 350

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DP 483
            + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I        
Sbjct: 351 PDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYKLSAITKKISFRDNLKS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +
Sbjct: 411 AYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYI 463

Query: 544 PM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
           P+ Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I
Sbjct: 464 PLKYGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEI 520

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +
Sbjct: 521 DLEDKETLDLFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNF 580

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK+G+E++  +   ++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK 
Sbjct: 581 VARKHGQEEVTVLDSALEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKD 640

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KT
Sbjct: 641 ASAMHEMRASFIQGSIEAGHTAEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKT 700

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           HYP  F    + L   N +    +  DA +   ++   S+NT     K+ +  IY  L +
Sbjct: 701 HYPAIFY--QVMLNYSNSD----YLIDALEAGFEVASLSINTIPYHDKIANKSIYIGLKS 754

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           IKG+    A  I+E    +P+ ++EDF +++    L   +LE LV  G  D F  +R ++
Sbjct: 755 IKGLSKDLALWIIE---HRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKV 811

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVL 959
             +L N+ +                F  E G+ F D I + ++        +F  EQ +L
Sbjct: 812 FNNLANLFE----------------FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELL 855

Query: 960 GFYFSGHPL 968
           G   S HPL
Sbjct: 856 GIGVSKHPL 864


>gi|126433813|ref|YP_001069504.1| error-prone DNA polymerase [Mycobacterium sp. JLS]
 gi|126233613|gb|ABN97013.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium sp.
           JLS]
          Length = 1099

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 279/905 (30%), Positives = 456/905 (50%), Gaps = 44/905 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS+YS L+GA +   ++++ A     AIA+TD + L+  + F++ A    ++ +
Sbjct: 61  YAELHAHSAYSFLDGAGTPEELVEEAARLDLRAIALTDHDGLYGVVRFAEAARELDMRTV 120

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L + M      + + + P P  P +++L    EGY+RL   +++ +L    K   R
Sbjct: 121 FGAELSLGMG---ARSARNEVPDPPGPHLLVLARGPEGYRRLSREIAKAHLAGGEKGKPR 177

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                L E       +LTG   G + +A        AEK L      FG DR+ V L  H
Sbjct: 178 YDYDALTEAAGGHWHILTGCRKGHVRQALSEGGPAAAEKALADLVDRFGRDRVSVELTHH 237

Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPR 247
               D  R + + +LA    L +VAT  + F           + A+ A  ++        
Sbjct: 238 GHPLDDERNAALAELAPRFGLTVVATTAAHFAEPSRGRLAMAMGAIRARHSIDEAAGYLA 297

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--K 305
                +L++  EM  +F+  P+ +    ++  +C+F L + AP LP F      D+    
Sbjct: 298 PLGGSHLRSGEEMARLFAHCPQVVTAAADLGEQCAFGLALIAPKLPPF------DVPAGH 351

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            E++ LR+  + G   R      A   +AQ     ++ EL VI ++ F GYFL+V D  +
Sbjct: 352 TEDSWLRHLVMLGARNRYGPPERAPQAYAQ-----IEHELRVIEKLSFPGYFLVVHDITR 406

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           + K+N I +  GRGS A S   YAL +T++DP+   LLFERFL+P R   PD DID   D
Sbjct: 407 FCKENGI-LAQGRGSAANSAVCYALGVTNVDPVANELLFERFLSPARDGPPDIDIDIESD 465

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            R++ I+YV ++YG +  AQ+    + + ++A+RD+ RAL     Q D   K +      
Sbjct: 466 LREQAIQYVYDRYGRDYAAQVANVITYRGRSAIRDMARALGFSQGQQDAWSKQLSK---- 521

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                 +AD        + +P VD  L+IS     L RH   H+ G+VI DRP++ + P+
Sbjct: 522 ---WNGLADSPDIEG--IPEPVVDLALQISN----LPRHMGIHSGGMVICDRPIADVCPV 572

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
                ++  V Q++       GL+KFD LGL  L+ L   +D + + +G+ VDL+ +   
Sbjct: 573 EWARMANRSVLQWDKDDCAAIGLVKFDMLGLGMLSALHYCIDLVREHKGLDVDLAKLDLS 632

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
           +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  Y 
Sbjct: 633 EPAVYEMLQRADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHPYI 692

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKI 721
            R+NG+E +   HP +   L++T GV ++QEQ+MQ+A   +G++ +EAD LRRAMG K+ 
Sbjct: 693 KRRNGEEPVTYDHPSMANALRKTLGVPLFQEQLMQLAVDCAGFTAAEADQLRRAMGSKRS 752

Query: 722 KEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            E+M + + RF  G   ++GI+  +A  I++ L  FA++GF +SH+ ++A + + ++W K
Sbjct: 753 TEKMRRLRGRFYDGMRQRHGITGEVADRIYDKLEAFANFGFPESHSLSFASLVFYSSWFK 812

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC--VDFKVGDNRIYYS 838
            H+P  F AA +  +       +    DAR+  + +  P VN        +     +   
Sbjct: 813 LHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAYATLESAGTEVRLG 872

Query: 839 LAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L A++ +G   A  I+E   A+ PF+SL D   RV   +L+    E+L  AGAL CFG +
Sbjct: 873 LGAVRHIGDDLAERIVEERKANGPFESLLDLTGRV---QLSVPQTEALATAGALGCFGVT 929

Query: 898 RMQLL 902
           R + L
Sbjct: 930 RREGL 934


>gi|94971073|ref|YP_593121.1| DNA polymerase III, alpha subunit [Candidatus Koribacter versatilis
            Ellin345]
 gi|94553123|gb|ABF43047.1| error-prone DNA polymerase, DnaE-like protein [Candidatus Koribacter
            versatilis Ellin345]
          Length = 1070

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 303/1036 (29%), Positives = 521/1036 (50%), Gaps = 77/1036 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            ++ L  +S++S L GA     ++ +    + PA+A+ D N ++ +  F   A   G++  
Sbjct: 7    YIELHANSAFSFLRGASLPETLIFRAQQLEYPAMALMDGNGVYGSARFHLAAKPNGVRAH 66

Query: 71   IGCQLDI-DMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            +G ++ + D+ + +         +P  P  + LL  + EGYQ L  +V+R+ + +  K  
Sbjct: 67   VGSEIAVRDLGERMAPAAWLPHQWPAEPVRLPLLCESREGYQNLCRMVTRLKMREPSKAE 126

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
                ++ ++E    GL+ LTGG  GP+  A          K +    ++FG + ++V LQ
Sbjct: 127  GAAVMADVEEF-ARGLVCLTGGDEGPLASALARGGEPEGHKTVEHLVRMFGRENVFVELQ 185

Query: 188  RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH   ++ +R    V++A + +LP++ATN   +  E + E  D+  A+ H   V+ KD  
Sbjct: 186  RHGLREQEWRNQAAVRIARSLQLPILATNGVRYADEPEREIADLFTAIRHH--VALKDAG 243

Query: 247  RVTPDH---YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ---VHAPILPRFIEKEC 300
            R+   +   YL+  +EM  +F DLPEA+ NT E+++R +F L       PI P    +  
Sbjct: 244  RLLAQNSCRYLRPTAEMARLFRDLPEAVANTWELSQRLTFELDDLGYQFPIYPTPDGESM 303

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARMKF 353
            D                 LE R+ +G I K Y A++        ++++  EL +I ++  
Sbjct: 304  DSF---------------LEKRVQEGVI-KRYGAKNEPDLYARAQKQVARELALIKKLGL 347

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
            +GYFLIV D I++ ++N+I V  GRGS A S   YAL IT +DP+   LLFERFL+  R 
Sbjct: 348  AGYFLIVWDIIRFCQQNDILV-QGRGSAANSAVCYALEITAVDPVGMELLFERFLSEARG 406

Query: 414  SMPDFDIDF-CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
              PD D+D    D+R++ I+YV  +YGH   A      + + K+A R+VG+AL      +
Sbjct: 407  EWPDIDLDLPSGDKREQAIQYVYTRYGHLGAAMTANVITYRGKSAAREVGKALGFDVETL 466

Query: 473  DRLCKLI-------PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            ++L KL+       PND     +L+   + + F EA+   P + + L++  +++ L RH 
Sbjct: 467  NKLTKLVSTWEWRGPND-----TLENQFESAGF-EAK--HPHIAKYLDLCSRIQDLPRHL 518

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
              H+ G+VI    L  +VP+         V Q++        +IK D LGL  + +++  
Sbjct: 519  GQHSGGMVICQGQLDSVVPIEPASMPGRSVVQWDKDDCADMHIIKVDLLGLGMMAVIKDC 578

Query: 586  LDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            +D + +  GV VDL+ +P +D + Y  L    T+G+FQ+ES     +L    P    DI+
Sbjct: 579  VDLVPRHYGVPVDLAQLPQNDGDVYRTLQKADTVGMFQVESRAQMASLPRNYPTRFYDIV 638

Query: 645  ALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
              V++ RPGPI   +   Y  R+  KE++   HPL++P+LK T GV ++QEQ++++A ++
Sbjct: 639  VQVAIIRPGPIVGNMANPYMRRRQKKEEVTYYHPLLEPVLKRTLGVPLFQEQLLRMAMIV 698

Query: 703  SGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            + +S +EA+ LRRA+G ++  + M +   +  +G ++NG        I + ++ FA YGF
Sbjct: 699  ANFSGTEAEELRRALGMRRSTQRMRELGVKLRAGMTENGFDPKTQEEIIQSISSFALYGF 758

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SHAA++A+I+Y +A+ K HY   F AA +  +           +DA++  ++++P  V
Sbjct: 759  PESHAASFALIAYASAYFKVHYLAAFTAAILNNQPMGFYSPAVLVKDAQRHGLRVLPVDV 818

Query: 822  NTPCVDFKV---GDNR-IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKK 876
                 D  V   GD R +   L  ++G+   TA  ++++  +  PF S ED   RV    
Sbjct: 819  QRSVWDCTVEHAGDERKLRLGLRYVRGLRQETAEILVKSRENHGPFASSEDLGRRV--PL 876

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            LNR+ L +L   GAL+  G +           ++ A W +  R ++             D
Sbjct: 877  LNRKELVALAQIGALNWVGGTAH---------RRDALW-QVERVSRRPGPLLQSAEEEED 926

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
               L + + E   V   N     G     HP+  ++  L KM +   E+      G  +R
Sbjct: 927  VSPLAQMNWEERLVADFNGT---GLTVGKHPMTYHRERLAKMRVLSAEQLQVAEDGRQVR 983

Query: 997  LAAMVVSKQQKKTRKG 1012
            +A  V+++Q+  T KG
Sbjct: 984  IAGCVIARQRPGTAKG 999


>gi|213582268|ref|ZP_03364094.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 520

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/522 (43%), Positives = 320/522 (61%), Gaps = 17/522 (3%)

Query: 108 GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
           GYQ L  L+S+ Y    G     I   WL E+  EGLI+L+GG  G + R     +  + 
Sbjct: 2   GYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALV 60

Query: 168 EKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
           E+ +  ++  F DR ++ L R  R  +       V+LA    LP+VATN+  FL  +D++
Sbjct: 61  EECVAFYEAHFPDRYFLELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFD 120

Query: 227 AHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
           AH++ +A+     +    RPR  +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +
Sbjct: 121 AHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTV 180

Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLD 342
           ++    LP+F   +        E+ L  K+  GLE RLA        +     +Y +RLD
Sbjct: 181 RLGEYFLPQFPTGDM-----TTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLD 235

Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F L
Sbjct: 236 IELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDL 295

Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
           LFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVG
Sbjct: 296 LFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVG 355

Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
           R L  PY  VDR+ KL+P DP   ++ +A   + +  E   AD  V  L+++++KLEG+ 
Sbjct: 356 RVLGHPYGFVDRISKLVPPDPGMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVT 414

Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
           R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++
Sbjct: 415 RNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTII 474

Query: 583 QKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG 619
             +L+ + +R  K     +D++ IP DD +      T G  G
Sbjct: 475 NWALEMINKRRAKNGEPPLDIAAIPLDDKKRLRHAATLGNHG 516


>gi|303262214|ref|ZP_07348158.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP14-BS292]
 gi|302636537|gb|EFL67028.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP14-BS292]
          Length = 968

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 273/769 (35%), Positives = 418/769 (54%), Gaps = 64/769 (8%)

Query: 209 LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD-L 267
           LPL   N        D E   VL A+  +  +  ++ P  +      + S +  +F +  
Sbjct: 86  LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLRSRQDVFISASSLEKLFQERF 140

Query: 268 PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
           P+AL+N  ++    S+ L      LPRF      +  +    ELR +A  GL        
Sbjct: 141 PQALDNLEKLISGISYDLDTSLK-LPRF------NPARPAVEELRERAELGL-------- 185

Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
           + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N   +G GRGS  GS+ +
Sbjct: 186 VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNGYYMGMGRGSAVGSLVS 245

Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
           YAL IT IDP+  +L+FERFLN +R +MPD DID     R + IRYV NKYG +  AQI+
Sbjct: 246 YALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFIRYVGNKYGSKHAAQIV 305

Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DPAHPVSLQAIADDSRFREARL 503
           TF +  AK ALRDV +   +P  ++  + K I        A+  +LQ       FR+   
Sbjct: 306 TFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKSAYEGNLQ-------FRQQIN 358

Query: 504 ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM-YRDVRSDLPVTQFNMKW 562
           +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+ Y D   ++P+TQ++   
Sbjct: 359 SKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYGD---EIPLTQYDAHG 415

Query: 563 IEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
           +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET  L  +  T GIF
Sbjct: 416 VEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLEDKETLALFASGNTKGIF 475

Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
           Q E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E++  + P+++ +
Sbjct: 476 QFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEEVTVLDPVLEDI 535

Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
           L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +  FI G+ + G 
Sbjct: 536 LAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRASFIQGSLEAGH 595

Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
           +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F    + L   N + 
Sbjct: 596 TVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFY--QIMLNSANSD- 652

Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
              +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    A  I+E   ++P
Sbjct: 653 ---YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDLALWIIE---NRP 706

Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
           + ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +           
Sbjct: 707 YSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE----------- 755

Query: 922 KHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                F  E G+ F D I + ++        +F  EQ +LG   S HPL
Sbjct: 756 -----FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELLGIGVSKHPL 799


>gi|254822689|ref|ZP_05227690.1| error-prone DNA polymerase [Mycobacterium intracellulare ATCC 13950]
          Length = 1095

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 299/1026 (29%), Positives = 502/1026 (48%), Gaps = 67/1026 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            +S  +  L  HS++S L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 58   RSVPYAELHAHSAFSFLDGASTPEELVEEAARLGLRALALTDHDGLYGAVRFAEAAAELD 117

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ + G +L      +L    + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 118  MRTVFGAEL------SLGGEARTERPDPAGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 171

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVN 185
               R     L E       +LTG   G + +A        AE+ L      FG + + V 
Sbjct: 172  GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSDGGPDAAERALADLVDRFGAQSVSVE 231

Query: 186  LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQK 243
            L  H +  D  R + +  LA    + +VAT  + F           + A+ A  ++ S  
Sbjct: 232  LTHHGQPLDDERNAVLAALAPRFGVGVVATTGAHFAGPSRRRLAMAMGAIRARESLDSAA 291

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++ +EM  +F+  P+ +    E+  +C+F L + AP LP F   +    
Sbjct: 292  GWLAPLGGSHLRSGAEMARLFAGGPDVVTAAAELGEQCAFGLALIAPQLPPFDVPD---- 347

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E++ LR   +AG   R        G +A     +++ EL VIA+++F GYFL+V D 
Sbjct: 348  GHTEDSWLRQLTMAGARDRY-------GPNAPRAYAQIEHELKVIAQLQFPGYFLVVHDI 400

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             ++ + NNI +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D+D  
Sbjct: 401  ARFCRDNNI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDMDIE 459

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+R++VI+YV +KYG +  AQ+    + + K A+RD+ RAL     Q D   K I +  
Sbjct: 460  SDQREKVIQYVYDKYGRDYAAQVANVITYRGKIAVRDMARALGFSQGQQDAWSKQISH-- 517

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                    +AD     +  + +P +D    ++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 518  -----WGGLADSPEVED--IPEPVID----LANQIRNLPRHMGIHSGGMVICDRPIADVC 566

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+ +G++VDL+ + 
Sbjct: 567  PVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDLARLD 626

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  
Sbjct: 627  LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 686

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-K 719
            Y  R+NG++ +V  HP ++P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG K
Sbjct: 687  YIRRRNGEDPVVYDHPSMEPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 746

Query: 720  KIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E M + + RF  G  + +G    +    +E L  FA++GF +SHA ++A + + ++W
Sbjct: 747  RSTERMRRLRGRFYEGMRALHGAPDEVIDRTYEKLEAFANFGFPESHALSFASLVFYSSW 806

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD--NRIY 836
             K H+P  F AA +  +       +    DAR+  + +  P VN       + +    + 
Sbjct: 807  FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHATLENTGTEVR 866

Query: 837  YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L A++ +G   A  ++E   A+ PF SL D  SR+   +L+    E+L  AGA  CFG
Sbjct: 867  LGLGAVRHIGDDLAEQLVEERKANGPFASLLDVTSRL---QLSVPQTEALATAGAFACFG 923

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVRFEN 954
             SR + L +       A      R  +   +     G+ S    L   S +E ++     
Sbjct: 924  MSRREGLWA-------AGAAATQRPGRLPGV-----GSSSHVPALPGMSELELAAA---- 967

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +    G     +P    +  L  MG+   E+  +   G+ + +A  V  +Q+  T +G  
Sbjct: 968  DVWATGISPDSYPTQFLREDLDAMGVVPAEKLGSVPDGDRVLIAGAVTHRQRPGTAQG-- 1025

Query: 1015 IGWVTF 1020
               VTF
Sbjct: 1026 ---VTF 1028


>gi|303269801|ref|ZP_07355549.1| DNA polymerase III DnaE [Streptococcus pneumoniae BS458]
 gi|302640661|gb|EFL71060.1| DNA polymerase III DnaE [Streptococcus pneumoniae BS458]
          Length = 957

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 273/769 (35%), Positives = 418/769 (54%), Gaps = 64/769 (8%)

Query: 209 LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD-L 267
           LPL   N        D E   VL A+  +  +  ++ P  +      + S +  +F +  
Sbjct: 75  LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLRSRQDVFISASSLEKLFQERF 129

Query: 268 PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
           P+AL+N  ++    S+ L      LPRF      +  +    ELR +A  GL        
Sbjct: 130 PQALDNLEKLISGISYDLDTSLK-LPRF------NPARPAVEELRERAELGL-------- 174

Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
           + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N   +G GRGS  GS+ +
Sbjct: 175 VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNGYYMGMGRGSAVGSLVS 234

Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
           YAL IT IDP+  +L+FERFLN +R +MPD DID     R + IRYV NKYG +  AQI+
Sbjct: 235 YALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFIRYVGNKYGSKHAAQIV 294

Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DPAHPVSLQAIADDSRFREARL 503
           TF +  AK ALRDV +   +P  ++  + K I        A+  +LQ       FR+   
Sbjct: 295 TFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKSAYEGNLQ-------FRQQIN 347

Query: 504 ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM-YRDVRSDLPVTQFNMKW 562
           +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+ Y D   ++P+TQ++   
Sbjct: 348 SKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYGD---EIPLTQYDAHG 404

Query: 563 IEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
           +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET  L  +  T GIF
Sbjct: 405 VEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLEDKETLALFASGNTKGIF 464

Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
           Q E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E++  + P+++ +
Sbjct: 465 QFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEEVTVLDPVLEDI 524

Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
           L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +  FI G+ + G 
Sbjct: 525 LAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRASFIQGSLEAGH 584

Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
           +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F    + L   N + 
Sbjct: 585 TVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFY--QIMLNSANSD- 641

Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
              +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    A  I+E   ++P
Sbjct: 642 ---YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDLALWIIE---NRP 695

Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
           + ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +           
Sbjct: 696 YSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE----------- 744

Query: 922 KHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                F  E G+ F D I + ++        +F  EQ +LG   S HPL
Sbjct: 745 -----FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELLGIGVSKHPL 788


>gi|71894540|ref|YP_278648.1| DNA polymerase III DnaE [Mycoplasma synoviae 53]
 gi|71851328|gb|AAZ43937.1| DNA polymerase III alpha subunit [Mycoplasma synoviae 53]
          Length = 990

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 248/661 (37%), Positives = 376/661 (56%), Gaps = 25/661 (3%)

Query: 264 FSDLPEAL-ENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQKEEENELRNKAVAGLEV 321
           F+DL E + +NT+ +A +C F L++   I LP F     ++I+ + +   R K       
Sbjct: 194 FNDLDEKIYQNTLNLADQC-FELEIDKEIKLPEFSSNSKEEIESKIKASERTKY------ 246

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                 +   Y      +R+++EL++I    F  YFLI+AD + WA+KN I +GPGRGS 
Sbjct: 247 ------LLLNYDKDLVIERINYELSIIKEQNFVDYFLIIADALSWARKNKISIGPGRGSV 300

Query: 382 AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
           +GS+ AY L ITD++PL F LLFERFLN  R++ PD DID   DRR EV+ Y+  KYG +
Sbjct: 301 SGSLVAYVLEITDVNPLDFDLLFERFLNTKRVTYPDIDIDIQDDRRSEVLDYIFEKYGQK 360

Query: 442 RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
           R A I TF +L AK+A++DVGR L +  S+V+ + K I ND    ++L++   + R  + 
Sbjct: 361 RCALITTFSTLGAKSAIKDVGRMLGISNSEVNLVTKTI-NDFDKNLTLES-EYNKRNSKY 418

Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
           +      + L E +  +EGLYR    HAAGIVI +  ++   P+ + V       Q +++
Sbjct: 419 KAIVSKYENLHEYATYIEGLYRQTGVHAAGIVIANNDITNYFPINK-VLDKYNQVQLSLE 477

Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LSLIPFDDHETYHLLTTKGT 617
            +EK GLIK DFLGLK LT++ K+++ L    +  D     +L  F DH+T+ +L    T
Sbjct: 478 NLEKYGLIKIDFLGLKNLTIV-KNIENLINPKLHFDNVINQNLNKFIDHKTFSILNDLKT 536

Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            GIFQLES GM++A+  ++ D  EDI A++SLYRPGP   I +Y   K    +I  +HP+
Sbjct: 537 EGIFQLESDGMKRAISQVKIDSFEDIYAIISLYRPGPSQYIPIYGKNKKDPSQIEKVHPI 596

Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            D ++  T G+I+YQEQ+MQIAQ ++G S SEAD+LRRA+ KK  +E+   K +F  G +
Sbjct: 597 YDKIVAPTFGIIVYQEQIMQIAQEVAGLSFSEADLLRRAISKKNSQELKSYKTKFFEGGA 656

Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
           KN +S  +   I+  + KFADYGFNKSHA AYAV++ + A+ K  YP  F    +     
Sbjct: 657 KNNVSSDLLNRIYSNIEKFADYGFNKSHAVAYAVLALKLAFYKARYPFIFYKVLLDNSFS 716

Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA-RHIMEA 856
           + E   K+ Q+A +  I+I    +N   ++    +N +Y S   IKG G  +A + I E 
Sbjct: 717 SQENTSKYVQEATKLKIKINAADINISSLNTVEENNNLYLSFLTIKGFGENSATKLIQER 776

Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
           +    F +  D   R+    + +  L  L+ A     FG +   L+ SL+++  +   + 
Sbjct: 777 NRAGKFKNFFDAAIRLGMIGIKKATLSLLINANIFRSFG-NINTLINSLEDVSNFVDLIN 835

Query: 917 K 917
           K
Sbjct: 836 K 836



 Score = 45.8 bits (107), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 42/169 (24%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQKAC 63
           K P ++HL+  + +S L  A+ LN + + I + +   +AITD  NL++    LEF +K  
Sbjct: 4   KKPIYLHLK--TEFSFLNSAIRLNKLFNLIESQKIEYLAITDKENLYALPYLLEFREK-- 59

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
               + IIGC+ ++D +                  +++L     GY+ + EL+       
Sbjct: 60  -YKFKLIIGCEFELDNK----------------LEVIILAKNLAGYKLINELIY------ 96

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA---------FFFNS 163
           Q   +  I LS   ++ +E + ++   ++G +            FF+NS
Sbjct: 97  QKSNNNSINLS---DLNSENIFVIDSDTNGYLKNKKSLEVELPNFFYNS 142


>gi|118616689|ref|YP_905021.1| error-prone DNA polymerase [Mycobacterium ulcerans Agy99]
 gi|118568799|gb|ABL03550.1| DNA polymerase III, alpha chain, DnaE2 [Mycobacterium ulcerans
           Agy99]
          Length = 1088

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 275/907 (30%), Positives = 465/907 (51%), Gaps = 42/907 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           ++ S ++  L  HS+YS L+GA +   ++++ A     A+A+TD N L+ A+ F++ A  
Sbjct: 46  VDSSIAYAELHAHSAYSFLDGASTPEELVEEAARLDLRALALTDHNGLYGAVRFAEAASG 105

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G++ + G +L      +L    + + P P  P +++L    EGY+RL   ++  +L   
Sbjct: 106 LGVRTVFGAEL------SLGPEARTEQPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGG 159

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
            K   R     L E       +LTG   G + +A        AE+ L      F   R+ 
Sbjct: 160 EKGKPRYDFDSLTEAAGGHWHILTGCRKGHVRQALRQGGPDAAERVLADLVDRFTAGRVS 219

Query: 184 VNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVS 241
           V L  H    D    + +  LA    + +VAT  + F           + A+ A  ++ S
Sbjct: 220 VELTHHGHPLDDENNAMLAGLAPRFGVGVVATTGAHFAHPARSRLAMAMGAIRARQSLDS 279

Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                      +L++ +EM  +F+  P+ +    E+  +C+F L + AP LP F   +  
Sbjct: 280 AAGWLAPLGGSHLRSGAEMARLFAQRPDVVTAAAELGEQCAFGLALIAPRLPPFDVPD-- 337

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                E++ LR+  ++G   R   G+  +   A+    +++ EL VIA++ F GYFL+V 
Sbjct: 338 --GHTEDSWLRSLVMSGARERY--GSTERSPRARKAYAQIEHELKVIAQLSFPGYFLVVH 393

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D  Q+ ++N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P+R   PD DID
Sbjct: 394 DITQFCRRNDI-LCQGRGSAANSAVCYALGVTAVDPIANELLFERFLSPERDGPPDIDID 452

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
              D+R++VI+YV NKYG +  AQ+    + + ++A+RD+ RAL     Q D   K I +
Sbjct: 453 IESDQREKVIQYVYNKYGRDYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQIGH 512

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                    A  DD         +   +++++++ ++  L RH   H+ G+VI DRP++ 
Sbjct: 513 -------WNATLDD--------VEGIPEQVIDLAAQIRNLPRHMGIHSGGMVICDRPIAD 557

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
           + P+     +D  V Q++       GL+KFD LGL  L+ L  + D +A+ +G++VDL+ 
Sbjct: 558 VCPVEWARMADRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYARDLVAEHKGIEVDLAR 617

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
           +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V
Sbjct: 618 LDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSV 677

Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             Y  R++G + +V  HP ++  L++T GV ++QEQ+MQ+A   +G+S +EAD LRRA+G
Sbjct: 678 HPYIRRRSGIDPVVYEHPSMESALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAIG 737

Query: 719 -KKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            K+  E M + + RF  G  + +G    +   I+E L  FA++GF +SHA ++A + + +
Sbjct: 738 SKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYS 797

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--R 834
           +W K H+P  F AA +  +       +    DAR+  + +  P VN       + +   +
Sbjct: 798 SWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVLVHGPDVNASLAHATLENAGMQ 857

Query: 835 IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
           +   L A++ +G   A  ++ E + + PF SL +  SRV   +L+    E+L   GAL C
Sbjct: 858 VRLGLGAVRHIGDDLAESLVAERNDNGPFASLLNLTSRV---QLSVPQTEALATTGALGC 914

Query: 894 FGYSRMQ 900
           FG SR +
Sbjct: 915 FGMSRRE 921


>gi|325696758|gb|EGD38646.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK160]
          Length = 1069

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 264/789 (33%), Positives = 411/789 (52%), Gaps = 51/789 (6%)

Query: 250  PDH-YLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+H +L     +   F +  PE+L N  ++ R   + +      LPRF      + ++  
Sbjct: 219  PNHEFLLAPDALAGAFKETFPESLANLEKLVRHVHYDINRELK-LPRF------NRERPA 271

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              ELR ++ AGL+ R        G   + Y++RLD EL+VI +M F  YFLIV D +++ 
Sbjct: 272  VEELRERSEAGLQKR--------GLTGELYQERLDQELDVIHQMGFDDYFLIVWDLLRFG 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R
Sbjct: 324  RSQGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYR 383

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +   
Sbjct: 384  PEFIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLTT 443

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+  
Sbjct: 444  ---AYEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL-- 498

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D 
Sbjct: 499  KYGEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIAEIDLEDA 558

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ET  L     T GIFQ E  G    L  +QP C E+++A  SL RPG  D I  +  RK+
Sbjct: 559  ETLKLFAAGQTKGIFQFEQPGAISLLNRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKH 618

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM 
Sbjct: 619  GLEQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAAEMH 678

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 679  RMQEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAFFKAHYPDV 738

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F    +     +      +  DA  F+ +  P S+N      K  D +I+  L  IKG+ 
Sbjct: 739  FFDVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLP 792

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L 
Sbjct: 793  RDLAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLP 852

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFS 964
            N+                 +FA E G+     T      ++ S   +FE EQ ++G   S
Sbjct: 853  NL----------------FVFADELGSLFADTTYSWTEAQDFSDAEKFELEQSIIGVGLS 896

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HPL      L K   + +         +  ++ A V + +  +T+KG  + ++  S+  
Sbjct: 897  DHPL----VKLAKEADQPFSWISELTENSRAKILAQVQTIKTIRTKKGENMAFLQVSDTK 952

Query: 1025 KEYEANFFP 1033
            K+ +   FP
Sbjct: 953  KKLDVTLFP 961



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/66 (24%), Positives = 35/66 (53%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36  IQLDTKTVYSFMDSLIPIKKYVQKAKGLGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72  GCQLDI 77
           G +L +
Sbjct: 96  GLELSL 101


>gi|118464788|ref|YP_883471.1| error-prone DNA polymerase [Mycobacterium avium 104]
 gi|118166075|gb|ABK66972.1| DNA polymerase III, alpha subunit, putative [Mycobacterium avium
           104]
          Length = 1093

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 276/905 (30%), Positives = 459/905 (50%), Gaps = 51/905 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS++S L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    ++ +
Sbjct: 58  YAELHAHSAFSFLDGASTPEEMVEEAARLDLRALALTDHDGLYGAVRFAEAAAELDVRTV 117

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L      +L  + + + P P  P +++L    EGY+RL   ++  +L    K   R
Sbjct: 118 FGAEL------SLGPSARTEAPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEKGKPR 171

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
             L  L E       +LTG   G + +A        A + L      FG  R+ + L RH
Sbjct: 172 YDLDALTEAAGGHWHILTGCRKGHVRQALSEGGPDEAARALADLVDRFGAARVSIELTRH 231

Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPR 247
            +  D  R + +  LA    + +VAT  + F           + A+ A  ++ S      
Sbjct: 232 GQPLDDERNAALAALAPRFGVGVVATTGAHFAGPSRRRLAMAVGAIRARESLDSAAGWLA 291

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +L++  EM  +F+  PEA+    E+  +C+F L + AP LP F   +       E
Sbjct: 292 PLGGSHLRSGEEMARLFAWCPEAVTAAAELGEQCAFGLALIAPRLPPFDVPD----GHTE 347

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
           ++ LR   + G   R      A   +AQ     ++ EL VIA+++F GYFL+V D  ++ 
Sbjct: 348 DSWLRQLTMTGARDRYGSPEHAPRAYAQ-----IEHELKVIAQLQFPGYFLVVHDIARFC 402

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           ++NNI +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D+D   D+R
Sbjct: 403 RENNI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDMDIESDQR 461

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           ++VI+YV ++YG +  AQ+    + + K A+RD+ RAL     Q D   K I        
Sbjct: 462 EKVIQYVYDRYGRDYAAQVANVITYRGKIAVRDMARALGFSQGQQDAWSKQI-------S 514

Query: 488 SLQAIADDSRFREARLADPSVD----RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           S   +AD           P V+    ++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 515 SWSGLAD----------SPDVEGIPPQVIDLANQVRNLPRHLGIHSGGMVICDRPIADVC 564

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
           P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+ +G++VDL+ + 
Sbjct: 565 PVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDLARLD 624

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  
Sbjct: 625 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 684

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-K 719
           Y  R+NG + ++  HP ++P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG K
Sbjct: 685 YIRRRNGVDPVLYDHPSMEPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 744

Query: 720 KIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           +  E M + + RF  G  + +G    +    +E L  FA++GF +SHA ++A + + ++W
Sbjct: 745 RSTERMRRLRGRFYDGMRALHGAPDEVIDRTYEKLEAFANFGFPESHALSFASLVFYSSW 804

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIY 836
            K H+P  F AA +  +       +    DAR+  + +  P VN       +      + 
Sbjct: 805 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHATLENAGTEVR 864

Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             L A++ +G   A  ++ E  A+ PF SL D  +R+   +L+    E+L  AGA  CFG
Sbjct: 865 LGLGAVRHIGDDLAEKLVQERKANGPFASLLDLTARL---QLSVPQTEALATAGAFGCFG 921

Query: 896 YSRMQ 900
            SR +
Sbjct: 922 MSRRE 926


>gi|324995477|gb|EGC27389.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK678]
          Length = 1069

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 265/789 (33%), Positives = 412/789 (52%), Gaps = 51/789 (6%)

Query: 250  PDH-YLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+H +L     +   F +  PE+L N  ++ R   + +      LPRF      + ++  
Sbjct: 219  PNHEFLLAPDALAGAFKETFPESLANLEKLVRHVHYDINRELK-LPRF------NRERPA 271

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              ELR ++ AGL+ R   G +        Y++RLD EL+VI +M F  YFLIV D +++ 
Sbjct: 272  VEELRERSEAGLKKRGLTGKL--------YQERLDQELDVIHQMGFDDYFLIVWDLLRFG 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R
Sbjct: 324  RSQGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYR 383

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +   
Sbjct: 384  PEFIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLTT 443

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+  
Sbjct: 444  ---AYEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL-- 498

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D 
Sbjct: 499  KYGEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIAEIDLEDA 558

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ET  L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+
Sbjct: 559  ETLKLFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKH 618

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM 
Sbjct: 619  GLEQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMH 678

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + +E F++GA K G S+T A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K +YP  
Sbjct: 679  RMQEDFVAGALKLGHSETKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAYYPDV 738

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F    +     +      +  DA  F+ +  P S+N      K  D +I+  L  IKG+ 
Sbjct: 739  FFDVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLP 792

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L 
Sbjct: 793  RDLAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLP 852

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFS 964
            N+                 +FA E G+     T      ++ S   +FE EQ ++G   S
Sbjct: 853  NL----------------FVFADELGSLFADTTYSWTEAQDFSDAEKFELEQSIIGVGLS 896

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HPL      L K   + +         +  R+ A V + +  +T+KG  + ++  S+  
Sbjct: 897  DHPL----VKLAKEADQPFNWISDLTENSRARILAEVQTIKTIRTKKGENMAFLQVSDTK 952

Query: 1025 KEYEANFFP 1033
            K+ +   FP
Sbjct: 953  KKLDVTLFP 961



 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/66 (24%), Positives = 35/66 (53%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36  IQLDTKTVYSFMDSLIPIKKYVQKAKELGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72  GCQLDI 77
           G +L +
Sbjct: 96  GLELSL 101


>gi|330469312|ref|YP_004407055.1| error-prone DNA polymerase [Verrucosispora maris AB-18-032]
 gi|328812283|gb|AEB46455.1| error-prone DNA polymerase [Verrucosispora maris AB-18-032]
          Length = 1088

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 307/1044 (29%), Positives = 485/1044 (46%), Gaps = 94/1044 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  H+++S L+GA     ++++       A+A+TD +  +  + F++ A A  +  I
Sbjct: 38   YAELHAHTNFSFLDGASHPEELVEEATRLGLTALAVTDHDGFYGVVRFAEAARALHLPTI 97

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L + +        Q   P P    +++L    EGY RL   ++R +L  +G +  R
Sbjct: 98   FGAELTLGLPGP-----QNGVPDPHGKHLLVLAHGHEGYARLATTIARAHL--RGGEKGR 150

Query: 131  ICLSWLQEIGTE---GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
                 L+EI  +    +++LTG   G +  A        A + L     LFG + + V L
Sbjct: 151  PVYGELEEIAADLRDHVLVLTGCRKGHVPAALLTRGVDAAARELDRLTTLFGAETVAVEL 210

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H    D  R   + +LA    LP VAT N  + +         L AV     + + D 
Sbjct: 211  TDHGHPIDGDRNDALAELATAAGLPTVATGNVHYATPGRRRLATTLAAVRARRSLDEMDG 270

Query: 246  --PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              P     H L++ +EM + F+  P A+    E     +F LQ+ AP LP +        
Sbjct: 271  WLPAAGTAH-LRSGAEMAARFAAYPGAVARAAEFGAELAFDLQLVAPQLPAYPVPPG--- 326

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E + LR    AG   R       +  H Q Y Q LD ELN+I  + F GYFL+V D 
Sbjct: 327  -HTEMSWLRQLTEAGARERYGP----REAHPQAYAQ-LDHELNMIEALGFPGYFLVVYDI 380

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++ ++ +I    GRGS A S   YAL IT++D +R  LLFERFL P+R   PD D+D  
Sbjct: 381  VEFCRRADI-YCQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVDIE 439

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR+EVI++V  +YG E  AQ+    S + ++A+RDV +A      Q D   K I    
Sbjct: 440  SDRREEVIQHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQI---- 495

Query: 484  AHPVSLQAIADDSRFREARLAD-PSV-DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                         R+ +    D P + ++++  + +++   RH   H+ G+VI DRP+ +
Sbjct: 496  ------------DRWGDVAAVDVPEIPEQVIAYANEVQTFPRHLGIHSGGMVICDRPVIE 543

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            + P+         V Q++       GL+KFD LGL  L+ L    D +   G+ +DL   
Sbjct: 544  VCPVEWGRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYGYDMI---GMSLDLGEE 600

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
              DD E Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V 
Sbjct: 601  TLDDPEVYDMLCRADSVGVFQVESRAQMATLPRLKPREFYDLVVEVALIRPGPIQGGSVH 660

Query: 661  -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG- 718
             Y  RKNG+E +   HPL+   L++T GV ++QEQ+MQ+A  L+G+  +EAD LRRAMG 
Sbjct: 661  PYIRRKNGQEPVTYAHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAEADQLRRAMGA 720

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+  E M +  +R  +G ++ GI+  +A +++  L  FA YGF +SHA ++A + Y ++W
Sbjct: 721  KRSVERMARIADRLYAGMAQRGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASSW 780

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT--------------- 823
            +K ++P  FLAA ++ +       +    DAR+  +Q+  P VN                
Sbjct: 781  LKRYHPGPFLAALLSAQPMGFYSPQTLVDDARRHGVQVRRPDVNASGVKPVLESTAETRW 840

Query: 824  ------PCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKK 876
                  P   + +G   +   L+ ++ +G   A+ I+ E SA  P+  + D   RV    
Sbjct: 841  GSQPGEPPHAWGLGGPAVRLGLSGVRTLGEPVAQRIVAERSAHGPYRDMPDLARRV---G 897

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            L    LE+L  A A  CFG +R Q L +            ++R ++          T + 
Sbjct: 898  LTAAQLEALATADAFACFGLTRRQALWAAGAAA-------QDRPDRLPGTV-----TGAA 945

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
              TL      +   R   +    G     HP    +P L  MG    +       G  IR
Sbjct: 946  APTLPGMEAVD---RLVADVWATGLSPENHPARFIRPQLEAMGAVPIDRLGRVEPGRRIR 1002

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTF 1020
            +  +V  +Q+  T  G     VTF
Sbjct: 1003 VGGIVTHRQRPATAGG-----VTF 1021


>gi|324993220|gb|EGC25140.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK405]
          Length = 1069

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 264/789 (33%), Positives = 411/789 (52%), Gaps = 51/789 (6%)

Query: 250  PDH-YLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+H +L     +   F +  PE+L N  ++ R   + +      LPRF      + ++  
Sbjct: 219  PNHEFLLAPDALAGAFKETFPESLANLEKLVRHVHYDINRELK-LPRF------NRERPA 271

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              ELR ++ AGL+ R   G +        Y++RLD EL+VI +M F  YFLIV D +++ 
Sbjct: 272  VEELRERSEAGLKKRGLTGKL--------YQERLDQELDVIHQMGFDDYFLIVWDLLRFG 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R
Sbjct: 324  RSQGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYR 383

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +   
Sbjct: 384  PEFIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLTT 443

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+  
Sbjct: 444  ---AYEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL-- 498

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D 
Sbjct: 499  KYGEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIAEIDLEDA 558

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ET  L     T GIFQ E  G    L  +QP C E+++A  SL RPG  D I  +  RK+
Sbjct: 559  ETLKLFAAGQTKGIFQFEQPGAISLLNRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKH 618

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM 
Sbjct: 619  GLEQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAAEMH 678

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 679  RMQEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAFFKAHYPDV 738

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F    +     +      +  DA  F+ +  P S+N      K  D +I+  L  IKG+ 
Sbjct: 739  FFDVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLP 792

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L 
Sbjct: 793  RDLAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLP 852

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFS 964
            N+                 +FA E G+     T      ++ S   +FE EQ ++G   S
Sbjct: 853  NL----------------FVFADELGSLFADTTYSWTEAQDFSDAEKFELEQSIIGVGLS 896

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HPL      L K   + +         +  ++ A V + +  +T+KG  + ++  S+  
Sbjct: 897  DHPL----VKLAKEADQPFSWISELTENSRAKILAQVQTIKTIRTKKGENMAFLQVSDTK 952

Query: 1025 KEYEANFFP 1033
            K+ +   FP
Sbjct: 953  KKLDVTLFP 961



 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/66 (24%), Positives = 35/66 (53%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36  IQLDTKTVYSFMDSLIPIKKYVQKAKELGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72  GCQLDI 77
           G +L +
Sbjct: 96  GLELSL 101


>gi|322388178|ref|ZP_08061782.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus infantis
            ATCC 700779]
 gi|321140850|gb|EFX36351.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus infantis
            ATCC 700779]
          Length = 1033

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 314/1030 (30%), Positives = 509/1030 (49%), Gaps = 119/1030 (11%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             L   + YS +E  +S+   +         ++ I D +NL+ A  F ++    GIQP++G
Sbjct: 4    QLDTKTVYSFMESMVSIKRYVSLGKKYGYSSLGIMDEDNLYGAYYFIKECQKQGIQPLLG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             ++ +  +D  K  N           +  L  +  GYQ L++L S   L   GK+     
Sbjct: 64   LEMTVHHKD--KWIN-----------LRFLALSNRGYQNLMKLSS---LKMTGKKEWTDF 107

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
             S+L++I    +I+        +D                      G   Y+ +      
Sbjct: 108  SSYLEDIC---VIVPYYPEIDSVD---------------------LGHDYYIGV------ 137

Query: 193  DRYRESQVVQLAYTHE-LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
              Y ++   Q  ++H  LPL   N+      ED EA  +L A+  +  + + D   V   
Sbjct: 138  --YPDTP--QSNFSHPILPLYRVNS---FESEDLEALQMLKAIKENVTLREVD---VQSQ 187

Query: 252  HYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQKEEE 308
              L   +E +  F     P AL+N   + +  S+  ++ + + LPRF      + ++   
Sbjct: 188  QGLFLPAERLEQFFLEKFPIALDNLARLVKDTSY--EIDSSLKLPRF------NPERPAV 239

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             ELR +A+ GLE         KG   Q Y+ RL+ EL+VI  M F  YFL+V D +++ +
Sbjct: 240  EELRERAIKGLE--------QKGLWNQVYQVRLEEELSVIHDMGFDDYFLVVWDLLRFGR 291

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                 +G GRGS  GS+ AYAL IT IDP+  +L+FERFLN +R +MPD DID     R 
Sbjct: 292  SQGYYMGMGRGSAVGSLVAYALDITGIDPVAKNLIFERFLNRERYTMPDIDIDIPDIYRP 351

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E IRYV+++YG    AQI+T+ +  AK A+RD+ +   +P  ++  + K I +      +
Sbjct: 352  EFIRYVRDRYGSIHAAQIVTYSTFGAKQAIRDIFKRYGVPEYELTAITKKIGSKDTLTTA 411

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +    +  FR+   +     +  EI++K+EG  R  S HAAG+VI D+ L+  +P+   
Sbjct: 412  YEG---NLGFRQLIQSKMEYQKAFEIAKKIEGYPRQTSIHAAGVVISDKNLTDYIPL--K 466

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D+ +TQ++   +E  GL+K DFLGL+ LT  QK  + L + +G+ + +  I  +D  
Sbjct: 467  YGEDMLITQYDAHGVEGNGLLKMDFLGLRNLTFAQKMQELLYETQGISLRIEDIDLEDKA 526

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T GIFQ E  G  + L+ ++P   E+++A  SL RPG  D I  +  RK+G
Sbjct: 527  TLALFAAGKTKGIFQFEQPGAIRLLKRVKPQNFEEVVATTSLNRPGASDYIDNFVARKHG 586

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEK+  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK   EM +
Sbjct: 587  KEKVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRYAGFSLGKADMLRRAMGKKNAAEMHR 646

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +E FI GA + G  +  A  +F ++ KFA YGFN+SHA AYA +++Q A+ KTH+P  F
Sbjct: 647  MEESFIQGALEKGHGQKQAQEVFAVMEKFAGYGFNRSHAYAYAALAFQLAYFKTHFPAIF 706

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
                +     +      +  DA +   ++ P S+NT     K+ D  I+  L +IKG+  
Sbjct: 707  YQVMLNYASGD------YILDALEMGFELAPLSINTVPYQDKLADKTIHLGLKSIKGMPR 760

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A  I+E    +PF S+EDF +R+        +L  LV  G  D F  +R ++L +L  
Sbjct: 761  DFAYWIIE---HRPFSSVEDFITRLPKNYKKISLLTPLVEVGLFDGFDKNRQKILTNLPT 817

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  + + +         ++FA    +++D    E FS   +  +F+ EQ  LG   S HP
Sbjct: 818  LFIFVEEL--------GSLFADSSYSWTDT---EDFS---NIEKFQKEQDWLGVGISQHP 863

Query: 968  LDVYK-----PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            L V       PI+    +   + +   +   +IR+          +T+KG  + ++  ++
Sbjct: 864  LLVLAKNPLYPIVSLSELSEGQTATVLVEIQSIRVI---------RTKKGENMAFLKVTD 914

Query: 1023 PAKEYEANFF 1032
                 E   F
Sbjct: 915  SKTSLEVTVF 924


>gi|327469649|gb|EGF15118.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK330]
          Length = 1069

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 261/770 (33%), Positives = 402/770 (52%), Gaps = 49/770 (6%)

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
             PE+L N  ++ R   + +      LPRF      + ++    ELR ++ AGL+ R   G
Sbjct: 238  FPESLANLEKLVRHVHYDINRELK-LPRF------NRERPAVEELRERSEAGLKKRGLTG 290

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
             +        Y++RLD EL VI +M F  YFLIV D +++ +     +G GRGS  GS+ 
Sbjct: 291  KL--------YQERLDQELAVIHQMGFDDYFLIVWDLLRFGRSQGYYMGMGRGSAVGSLV 342

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E IRYV+++YG    AQI
Sbjct: 343  AYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPEFIRYVRDRYGSMHAAQI 402

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
            +T+ +  AK A+RDV +   +P  ++  + K I    +      A   +  FR+   +  
Sbjct: 403  VTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDS---LTSAYEKNMGFRQIINSKL 459

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
               +  +I++K+EG  R  S HAAG+V+ D  L+  +P+      D+ +TQ++   +E  
Sbjct: 460  EYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL--KYGEDMYITQYDAHGVESN 517

Query: 567  GLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D ET  L     T GIFQ E 
Sbjct: 518  GLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIAEIDLEDAETLKLFAAGQTKGIFQFEQ 577

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
             G    L+ +QP C E+++A  SL RPG  D I  +  RK+G E++  I   +  +L  T
Sbjct: 578  PGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGLEQVELIDDSLADILAPT 637

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM   +E F++GA K G S++ 
Sbjct: 638  YGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMHHMQEDFVAGALKLGHSESK 697

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F    +     +      +
Sbjct: 698  AKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDVFFDVMLNYSSSD------Y 751

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
              DA  F+ +  P S+N      K  D +I+  L  IKG+    A  I+E   +  F  +
Sbjct: 752  ITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLPRDLAYWIIEERQNAAFTGV 811

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
            EDF  R+        +L  L+  G  D F  +R ++L +L N+                 
Sbjct: 812  EDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNL----------------F 855

Query: 926  IFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +FA E G+     T      ++ S   +FE EQ ++G   S HPL      L K   + +
Sbjct: 856  VFADELGSLFADTTYSWTEAQDFSDAEKFELEQSIIGVGLSDHPL----VKLAKEADQPF 911

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                     +  R+ A V + +  +T+KG  + ++  S+  K+ +   FP
Sbjct: 912  SWISELTENSRARILAQVQTIKTIRTKKGENMAFLQVSDTKKKLDVTLFP 961


>gi|327461490|gb|EGF07821.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK1]
          Length = 1042

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 264/789 (33%), Positives = 411/789 (52%), Gaps = 51/789 (6%)

Query: 250  PDH-YLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+H +L     +   F +  PE+L N  ++ R   + +      LPRF      + ++  
Sbjct: 192  PNHEFLLAPDALAGAFKETFPESLANLEKLVRHVHYDINRELK-LPRF------NRERPA 244

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              ELR ++ AGL+ R   G +        Y++RLD EL+VI +M F  YFLIV D +++ 
Sbjct: 245  VEELRERSEAGLKKRGLTGKL--------YQERLDQELDVIHQMGFDDYFLIVWDLLRFG 296

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R
Sbjct: 297  RSQGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYR 356

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +   
Sbjct: 357  PEFIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLTT 416

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+  
Sbjct: 417  ---AYEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL-- 471

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D 
Sbjct: 472  KYGEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIAEIDLEDA 531

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ET  L     T GIFQ E  G    L  +QP C E+++A  SL RPG  D I  +  RK+
Sbjct: 532  ETLKLFAAGQTKGIFQFEQPGAISLLNRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKH 591

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM 
Sbjct: 592  GLEQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAAEMH 651

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 652  RMQEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAFFKAHYPDV 711

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F    +     +      +  DA  F+ +  P S+N      K  D +I+  L  IKG+ 
Sbjct: 712  FFDVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLP 765

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L 
Sbjct: 766  RDLAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLP 825

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFS 964
            N+                 +FA E G+     T      ++ S   +FE EQ ++G   S
Sbjct: 826  NL----------------FVFADELGSLFADTTYSWTEAQDFSDAEKFELEQSIIGVGLS 869

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HPL      L K   + +         +  ++ A V + +  +T+KG  + ++  S+  
Sbjct: 870  DHPL----VKLAKEADQPFSWISELTENSRAKILAQVQTIKTIRTKKGENMAFLQVSDTK 925

Query: 1025 KEYEANFFP 1033
            K+ +   FP
Sbjct: 926  KKLDVTLFP 934



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/66 (24%), Positives = 35/66 (53%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 9  IQLDTKTVYSFMDSLIPIKKYVQKAKELGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 68

Query: 72 GCQLDI 77
          G +L +
Sbjct: 69 GLELSL 74


>gi|111221614|ref|YP_712408.1| error-prone DNA polymerase [Frankia alni ACN14a]
 gi|111149146|emb|CAJ60829.1| putative DNA polymerase III (ALPHA CHAIN) DNAE2 (DNA
           NUCLEOTIDYLTRANSFERASE) [Frankia alni ACN14a]
          Length = 1106

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 286/914 (31%), Positives = 460/914 (50%), Gaps = 39/914 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS++S L+GA    +++++       A+A+TD + L+  + F++ A   G++ +
Sbjct: 57  YAELHCHSAFSFLDGASQPEDLVEEAVRLGLSALALTDHDGLYGVVRFAEAAREVGLRTV 116

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G ++ +      +    G+T  P    +++L    EGY+RL  L+S  +L    K  + 
Sbjct: 117 FGAEISL----GARAARAGETD-PDGDHLLVLARDPEGYRRLARLLSDAHLAGGEKGRLV 171

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                          +LTG   G + RA   +    A   L    +LFG + + V L  H
Sbjct: 172 AEPEACARAAGGHWQVLTGCRKGTVPRALARSGPAAAGAALAELAELFGRENVAVELADH 231

Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR--P 246
               D  R   + +LA T  LPLVAT N  + +         + AV     +++ D   P
Sbjct: 232 AHPLDSARNDALAELARTARLPLVATGNVHYAAPGAARLAAAMAAVRARRSLAEMDGWLP 291

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                H L++ +EM   F+  P A+E    I   C+F L + AP LP F           
Sbjct: 292 AAGTAH-LRSGAEMAQRFARFPTAVEQAARIGAECAFDLHLVAPRLPDFPVPP----GHT 346

Query: 307 EENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
           E + LR   + G   R     Q  IA  Y       +L  EL +I ++ F GYFLIV D 
Sbjct: 347 EASWLRLLTMQGAARRYGPAGQERIAGAY------DQLAHELGLIEQLGFPGYFLIVHDI 400

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           +++ +++ I +  GRGS A S   YAL IT +D + F LLFERFL P+R   PD D+D  
Sbjct: 401 VEFCRRHRI-LCQGRGSAANSAVCYALGITGVDAVSFGLLFERFLAPERDGPPDIDLDIE 459

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             RR+EVI+YV  +YG +R AQ+    + + ++A+RDV RAL     Q D   + +    
Sbjct: 460 SGRREEVIQYVYRRYGRDRAAQVANVITYRPRSAVRDVARALGFSAGQQDAWSRQLDR-- 517

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               SL A                   + +++ +L G  RH   H+ G+VI DRP+ ++V
Sbjct: 518 ---WSLPAAGPPPSGDGGGPEHDIPPEVTQLADRLLGFPRHLGIHSGGMVICDRPVGEVV 574

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
           P+         V Q++      AGL+KFD LGL  L++L K+ D +    G  +DLSLIP
Sbjct: 575 PVEWARMPGRTVIQWDKDDCAAAGLVKFDLLGLGMLSMLHKAFDLIRGHHGRDLDLSLIP 634

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
            +D   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  
Sbjct: 635 PEDPAVYDMLCAADSIGVFQVESRAQMATLPRLRPRRFYDLVVEVALIRPGPIQGGSVHP 694

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-K 719
           Y  R+NG E++   HPL+   L +T GV ++QEQ+MQ+A  ++G+S +EAD LRRAMG K
Sbjct: 695 YIRRRNGAEEVTYPHPLLRRSLAKTLGVPLFQEQLMQMAIDIAGFSAAEADELRRAMGSK 754

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           +  + +++ +ER  +G + +GI+  +A ++F  L+ FA++GF +SH+ ++A + Y ++W+
Sbjct: 755 RSADRIERLRERLYTGMAASGITGALADDLFTKLSAFANFGFPESHSVSFAFLVYASSWI 814

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIYY 837
           K +YP  F AA +  +       +    DAR+  ++++ P VN   V   +     R+  
Sbjct: 815 KLYYPAAFCAALLNAQPMGFYSPQSLVADARRHGVEVLRPDVNASAVGASLVGAQPRVRL 874

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            L+ ++ VG + AR I+E   A  P+  + D   RV    L+   +E+L  AGA  CFG 
Sbjct: 875 GLSGVRRVGESLARRIVETRVAGGPYAGMADLVRRV---GLSVDQVEALATAGAFACFGV 931

Query: 897 SRMQLLQSLDNIQK 910
           +R + L +   + +
Sbjct: 932 ARREALWAAGAVAQ 945


>gi|15672478|ref|NP_266652.1| DNA polymerase III DnaE [Lactococcus lactis subsp. lactis Il1403]
 gi|14194667|sp|Q9CI70|DPO3A_LACLA RecName: Full=DNA polymerase III subunit alpha
 gi|12723378|gb|AAK04594.1|AE006285_2 DNA polymerase III, alpha chain 2 [Lactococcus lactis subsp. lactis
            Il1403]
 gi|326406024|gb|ADZ63095.1| DNA polymerase III subunit alpha [Lactococcus lactis subsp. lactis
            CV56]
          Length = 1060

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 305/1043 (29%), Positives = 516/1043 (49%), Gaps = 113/1043 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS L+  + +++ L+         + I D  NL +A  F +KA    +QPI
Sbjct: 2    FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            I  +L+ + +             P   S +      EGY+ L+ + +   L + G++   
Sbjct: 62   ISIELNFEWRG-----------LPIAFSFI--AKDTEGYKNLLRIST---LHNYGRRQFS 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               + L  I    +I  T GS   +        S VA++  +   +L       NL    
Sbjct: 106  DIQNHLSGIAL--IIPETYGSLSELTEL-----SSVADEAFIGIDQLTDKGAKFNLP--- 155

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA------HSTVVSQKD 244
                              LP  A     +L+  D E   +L AV        S  +S  +
Sbjct: 156  -----------------TLPFPAIR---YLNFADNEILAILHAVRDGVSFDESLTISSNE 195

Query: 245  ---RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
               RP     ++LK            P+AL+N   +  + ++        LPRF      
Sbjct: 196  LLQRPEAYETYFLKY----------FPQALKNLSALTAKIAYQFDEKLE-LPRF------ 238

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAI---AKGYHAQD---YRQRLDFELNVIARMKFSG 355
            D +++    LR +A  GL  RL +  +       + QD   Y++RL+ EL+VI +M F  
Sbjct: 239  DKKRQAVEHLREEATLGLSARLEEKNLLTEVSSVNLQDLSVYQERLEKELSVIHQMGFDD 298

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVAD +++A++ +I  G GRGS AGS+ AY L IT +DP++ +L FERFLNP+R++M
Sbjct: 299  YFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVAM 358

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD DID   DRR E++ Y++N+YG + VAQI+TF +L  + ALRDVG+A  M  +++  L
Sbjct: 359  PDIDIDMPDDRRAELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSNL 418

Query: 476  CKLIPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             +++            +AD+     RF+   L +  + R+ E+++++EG+ R  STHA+G
Sbjct: 419  TRMLVR------RFGTLADEYENNQRFKAEVLKNGKLKRIYEVARRIEGMPRQTSTHASG 472

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +V+ +  L   V +      DL +TQ+    +E  GL+K DFLGL+ LT++ +  D + +
Sbjct: 473  VVLSEESLVNYVSL--KPSEDLALTQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLVKR 530

Query: 592  R-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            R  + +D   I  +D +T  L     T+GIFQ E+  MR+ L  + P   +DI+   S++
Sbjct: 531  RQKIDIDPLKINLEDEDTLALFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIF 590

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP   I  +  R++GKE + ++   I  +LK T G++IYQEQ+MQ+AQ  +G+SL +A
Sbjct: 591  RPGPSQFIPQFVARRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKA 650

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRA+ KK   E++K +E F+  AS NG SK  A  I++L+ +FA+YGFN+SH  AY 
Sbjct: 651  DLLRRAISKKKGSELEKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYG 710

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             +++Q A+ K H+P EF    +        K +    DA +   +I  PS+N   +   V
Sbjct: 711  ALAFQIAYFKAHFPDEFYEIQL-----RDRKREVMILDALENGFEIEKPSINLMKIGDFV 765

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             + +I   LA ++G+    A+ I+E   ++P+  L DF  ++ +    +  +  L+  GA
Sbjct: 766  KNKKIRLGLAHVQGISRDLAKWIVE---NQPYKDLADFVEKLPNNFHKKENILPLIQIGA 822

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R +L  +L +      +         ++IF    G        E +S    + 
Sbjct: 823  FDYADSNRGKLAYNLADHANLLNYYS-------DDIFMASSGGGFAYHEAEDYS---ETE 872

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            +++ E+ +LG   + HPL   + + R+     +      ++   + +   +   +  +T+
Sbjct: 873  KYDFEKNLLGIGVTPHPL---QNLARRFE-GNFTPLAQLVKNRRMTILVEINYIRTHRTK 928

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
             G  + ++T S+  + ++   FP
Sbjct: 929  TGQTMAFLTVSDSRENFDVTLFP 951


>gi|327459938|gb|EGF06278.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK1057]
          Length = 1069

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 264/789 (33%), Positives = 411/789 (52%), Gaps = 51/789 (6%)

Query: 250  PDH-YLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+H +L     +   F +  PE+L N  ++ R   + +      LPRF      + ++  
Sbjct: 219  PNHEFLLTPDALAGAFKETFPESLSNLEKLVRYVHYDINRELK-LPRF------NRERPA 271

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              ELR ++ AGL+ R   G +        Y++RL+ EL VI +M F  YFLIV D +++ 
Sbjct: 272  VEELRERSEAGLKKRGLTGKL--------YQERLNQELAVIHQMGFDDYFLIVWDLLRFG 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R
Sbjct: 324  RSQGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYR 383

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +   
Sbjct: 384  PEFIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT- 442

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+  
Sbjct: 443  --SAYEKNMGFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL-- 498

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D 
Sbjct: 499  KYGEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIAEIDLEDA 558

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ET  L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+
Sbjct: 559  ETLKLFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKH 618

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM 
Sbjct: 619  GLEQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMH 678

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 679  RMQEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDV 738

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F    +     +      +  DA  F+ +  P S+N      K  D +I+  L  IKG+ 
Sbjct: 739  FFDVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLP 792

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L 
Sbjct: 793  RDLAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLP 852

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFS 964
            N+                 +FA E G+     T      ++ S   +FE EQ ++G   S
Sbjct: 853  NL----------------FVFADELGSLFADTTYSWTEAQDFSDAEKFELEQSIIGVGLS 896

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HPL      L K   + +         +  R+ A V + +  +T+KG  + ++  S+  
Sbjct: 897  DHPL----VKLAKEADQPFSWISELTENSRARILAEVQTIKTIRTKKGENMAFLQVSDTK 952

Query: 1025 KEYEANFFP 1033
            K+ +   FP
Sbjct: 953  KKLDVTLFP 961


>gi|149010467|ref|ZP_01831838.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP19-BS75]
 gi|147764948|gb|EDK71877.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP19-BS75]
          Length = 957

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 272/769 (35%), Positives = 416/769 (54%), Gaps = 64/769 (8%)

Query: 209 LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD-L 267
           LPL   N        D E   VL A+  +  +  ++ P  +      + S +  +F +  
Sbjct: 75  LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLRSRQDVFISASSLEKLFQESF 129

Query: 268 PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
           P+AL+N  ++    S+ L      LPRF      +  +    ELR +A  GL        
Sbjct: 130 PQALDNLEKLISGISYDLDTSLK-LPRF------NPARPAVEELRERAELGL-------- 174

Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
           + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N   +G GRGS  GS+ +
Sbjct: 175 VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNGYYMGMGRGSAVGSLVS 234

Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
           YAL IT IDP+  +L+FERFLN +R +MPD DID     R + IRYV NKYG +  AQI+
Sbjct: 235 YALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFIRYVGNKYGSKHAAQIV 294

Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DPAHPVSLQAIADDSRFREARL 503
           TF +  AK ALRDV +   +P  ++  + K I        A+  +LQ       FR+   
Sbjct: 295 TFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKSAYEGNLQ-------FRQQIN 347

Query: 504 ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM-YRDVRSDLPVTQFNMKW 562
           +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+ Y D   ++P+TQ++   
Sbjct: 348 SKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYGD---EIPLTQYDAHG 404

Query: 563 IEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
           +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET  L  +  T GIF
Sbjct: 405 VEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETLALFASGNTKGIF 464

Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
           Q E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E++  +   ++ +
Sbjct: 465 QFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEEVTVLDSALEDI 524

Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
           L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +  FI G+ + G 
Sbjct: 525 LAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRASFIQGSIEAGH 584

Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
           +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F    + L   N + 
Sbjct: 585 TAEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFY--QIMLNSANSD- 641

Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
              +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    A  I+E   ++P
Sbjct: 642 ---YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDLALWIIE---NRP 695

Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
           + ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +           
Sbjct: 696 YSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE----------- 744

Query: 922 KHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                F  E G+ F D I + ++        +F  EQ +LG   S HPL
Sbjct: 745 -----FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELLGIGVSKHPL 788


>gi|330808697|ref|YP_004353159.1| Error-prone DNA polymerase [Pseudomonas brassicacearum subsp.
            brassicacearum NFM421]
 gi|327376805|gb|AEA68155.1| Error-prone DNA polymerase [Pseudomonas brassicacearum subsp.
            brassicacearum NFM421]
          Length = 1025

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 315/1031 (30%), Positives = 484/1031 (46%), Gaps = 95/1031 (9%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  +  L   S++S   GA S   +  +   +   A+AITD   L   +   Q A    +
Sbjct: 2    SVEYAELHCLSNFSFQRGASSALELCRRARQEGYQALAITDECTLAGIVRAWQAAKELEL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            Q I+G ++ ++                  P +VLLV   EGYQ L  L++R     + K 
Sbjct: 62   QLIVGSEIQVE----------------NGPKLVLLVENLEGYQALCRLITRARRRSE-KG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              RI      +    GL+            A +    + AE+     + +F  RL++ +Q
Sbjct: 105  HYRIVREDFDQP-LSGLL------------ALWIAEGKDAEEHGRWLQSIFAGRLWLTVQ 151

Query: 188  RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H G D R R +  + LA   +LP+VA+ +            D + A+ H   V++  + 
Sbjct: 152  LHCGQDDRRRLADSLALAERLDLPVVASGDVHMHVRGRRALQDTMTAIRHHVTVAEAGQ- 210

Query: 247  RVTP--DHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R+ P  +H+L++R ++  ++   P AL + T+ IARRC+F L       PR +  E  D 
Sbjct: 211  RLHPNGEHHLRSRKDLADLY---PRALLDETLNIARRCTFDLGQLRYQYPRELVPEGHD- 266

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                 + LR     G+  R   GA  K       R ++D EL++IA + +  YFL V D 
Sbjct: 267  ---PASWLRELTERGMRERWKDGATDK------VRAQIDKELSLIAELGYDSYFLTVQDI 317

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +A+  +I +  GRGS A S   YAL IT+IDP   SLLFERFL+ +R   PD D+DF 
Sbjct: 318  VSFARSRHI-LCQGRGSAANSAVCYALGITEIDPSLTSLLFERFLSRERNEPPDIDVDFE 376

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL--CKLIPN 481
             DRR+EV++YV  +YG  R A      S     A+RDV +AL +P  QV+ L  C    +
Sbjct: 377  HDRREEVLQYVFQRYGRHRAALTAVVSSYHGAGAVRDVAKALGLPPDQVNALADCCGRWS 436

Query: 482  DPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            D A PV         R RE       P + R+L ++++L G  RH S H  G VI ++PL
Sbjct: 437  DEAPPV--------ERLREGGFDPDSPVLRRVLSLTRQLIGFPRHLSQHPGGFVISEQPL 488

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
              LVP+     ++  + Q++   ++  GL+K D L L  L+ +++  D +   RG +  L
Sbjct: 489  DTLVPVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLIEHYRGQRYAL 548

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   
Sbjct: 549  ASLPQNDRATYEMISRADTIGVFQIESRAQMSMLPRLRPKTFYDLVIEVAIVRPGPIQGG 608

Query: 659  VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V  Y  R+N +E +      +  +L  T GV ++QEQVMQIA + + Y+  EAD LRR+
Sbjct: 609  MVHPYLRRRNKEEAVTYPSEALKQVLNRTLGVPLFQEQVMQIAIVAADYTPGEADQLRRS 668

Query: 717  MGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M   K    ++  +ER   G  KNG +   A  IFE +  F +YGF +SHAA++A+++Y 
Sbjct: 669  MAAWKRHGGLEPHRERLAQGMKKNGYTAEFAAQIFEQIKGFGNYGFPESHAASFALLTYA 728

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DN 833
            ++W+K H P  F  A +           +  QDAR+  + I P  V     D  +   + 
Sbjct: 729  SSWLKCHEPAAFACALINSWPMGFYSPDQILQDARRHQLSIRPVDVRASDWDCSLEPMEG 788

Query: 834  R---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            R   I   L  +KG     AR I  A   +PF  + D   R    +L+ R L  L  AGA
Sbjct: 789  RQPAIRMGLRMVKGFREEDARRIEAARRHRPFSDVADLGERA---QLDARALAQLADAGA 845

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV-ENSS 949
                       LQ L   +  A+W E     K   +FA         + L K ++ EN  
Sbjct: 846  -----------LQGLAGDRHRARW-EVAGVQKQLGLFAGLPSQEEPPVALPKPTLGENLF 893

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
              +      LG     HPL + +P LR    +   E      G N+ +A +V  +Q+  T
Sbjct: 894  ADYTT----LGTTLGPHPLALLRPELRARRCRSSRELQDVEHGRNVSVAGLVTGRQRPGT 949

Query: 1010 RKGSRIGWVTF 1020
              G     VTF
Sbjct: 950  ASG-----VTF 955


>gi|254233973|ref|ZP_04927298.1| DNA polymerase III (alpha chain) dnaE2 (DNA nucleotidyltransferase)
           [Mycobacterium tuberculosis C]
 gi|124599502|gb|EAY58606.1| DNA polymerase III (alpha chain) dnaE2 (DNA nucleotidyltransferase)
           [Mycobacterium tuberculosis C]
          Length = 1079

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 278/905 (30%), Positives = 457/905 (50%), Gaps = 45/905 (4%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 42  SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 101

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ + G +L      +L  T + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 102 VRTVFGAEL------SLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 155

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              R     L E       +LTG   G + +A   +        L      F        
Sbjct: 156 GKPRYDFDALTEAAGGHWHILTGCRKGHVAQALPQSGPTADAAALPDLVDPFTPSAVSIE 215

Query: 187 QRHRGY--DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE-AHDVLMAVAHSTVVSQK 243
             H G+  D  R + +  LA    + +VAT  + F        A  +    A  ++ S  
Sbjct: 216 LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 275

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                    ++++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +    
Sbjct: 276 GWLAPLGGAHVRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPD---- 331

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D 
Sbjct: 332 GHTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 386

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            ++ + N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID  
Sbjct: 387 TRFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 445

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K + +  
Sbjct: 446 SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSH-- 503

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                    ADD         D   +++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 504 -----WTGQADD--------VDGIPEQVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 550

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
           P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+ +G++VDL+ + 
Sbjct: 551 PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 610

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  
Sbjct: 611 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 670

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-K 719
           Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG K
Sbjct: 671 YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 730

Query: 720 KIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           +  E M + + RF  G  + +G    +   I+E L  FA++GF +SHA ++A + + +AW
Sbjct: 731 RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 790

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIY 836
            K H+P  F AA +  +       +    DAR+  + +  P VN              + 
Sbjct: 791 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 850

Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             L A++ +G   A  ++ E +A+ PF SL D  SRV   +L+   +E+L  AGAL CFG
Sbjct: 851 LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 907

Query: 896 YSRMQ 900
            SR +
Sbjct: 908 MSRRE 912


>gi|145225469|ref|YP_001136147.1| error-prone DNA polymerase [Mycobacterium gilvum PYR-GCK]
 gi|145217955|gb|ABP47359.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium gilvum
           PYR-GCK]
          Length = 1087

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 277/907 (30%), Positives = 455/907 (50%), Gaps = 43/907 (4%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           +S  +  L  HS+YS L+GA +   ++++ +     A+A+TD + L+  + F++ A    
Sbjct: 48  RSMPYAELHAHSAYSFLDGASTPEELVEEASRLGLRALALTDHDGLYGVVRFAEAAKELD 107

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           +  + G +L      +L    +   P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 108 VDTVFGAEL------SLGGGTRTDVPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 161

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
             +R     L E       +LTG   G + +A        AE  L      FG +R+ V 
Sbjct: 162 GVLRYDFDALTEAAGGHWQILTGCRKGHVRQALLRGGDSAAEAALADLVDRFGRERVTVE 221

Query: 186 LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQK 243
           L  H    D  R + +  LA    L ++AT  + F           + A+ A +++    
Sbjct: 222 LTHHGHPLDDERNAALAALAPRFGLTVIATTAAHFAEPSRGRLAMAMGAIRARNSIDEAA 281

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                    +L++  EM  +F+  PE +    ++  +C+F L + AP LP F        
Sbjct: 282 GYLAPLGGSHLRSGEEMARVFAHCPEVVTAAADLGEQCAFGLALIAPQLPPFEVP----A 337

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              E + LR+  + G   R      A   +AQ     ++ EL VI ++ F GYFL+V D 
Sbjct: 338 GHTENSWLRHLVMQGARERYGPPERASRAYAQ-----IEHELRVIEQLNFPGYFLVVHDI 392

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            ++ ++N I +  GRGS A S   YAL +T++DP+   LLFERFL+P R   PD DID  
Sbjct: 393 TRFCRENAI-LSQGRGSAANSAVCYALKVTNVDPIANGLLFERFLSPARDGPPDIDIDIE 451

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            D R++ I+YV  +YG E  AQ+    + + ++A+RD+ RAL     Q D   K I    
Sbjct: 452 SDLREKAIQYVYERYGREYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQISQ-- 509

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                   +AD +   +  + +P +D  ++IS     L RH   H+ G+VI DRP++ + 
Sbjct: 510 -----WGNLADATHVED--IPEPVIDLAMQISH----LPRHMGIHSGGMVICDRPIADVC 558

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
           P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+ +G++VDL+ + 
Sbjct: 559 PVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGLEVDLAKLD 618

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  
Sbjct: 619 LSEPAVYEMLQRADSVGVFQVESRAQMATLPRLKPRMFYDLVVEVALIRPGPIQGGSVHP 678

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-K 719
           Y  R+NG+E +   HP ++  L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG K
Sbjct: 679 YIKRRNGQEPVTYEHPSMERALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 738

Query: 720 KIKEEMDKQKERFISG-ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           +  E+M + + RF  G A  +GIS  +A  I+E L  FA++GF +SH+ ++A + + ++W
Sbjct: 739 RSTEKMRRLRGRFFEGMAELHGISGDVARRIYEKLEAFANFGFPESHSLSFASLVFYSSW 798

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IY 836
            K H+P  F AA +  +       +    DAR+  + +  P VN       + ++   + 
Sbjct: 799 FKLHHPAAFCAALLRAQPMGFYSPQTLVADARRHGVDVHGPDVNASLAHATLENHGLDVR 858

Query: 837 YSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             L +I+ +G   A+ ++E    + PF SL D   RV   +L     E+L  AGAL CFG
Sbjct: 859 LGLGSIRHIGDELAQRLVEDRKLNGPFVSLTDLTRRV---QLTVPQTEALATAGALGCFG 915

Query: 896 YSRMQLL 902
            +R + L
Sbjct: 916 ITRREGL 922


>gi|120402538|ref|YP_952367.1| error-prone DNA polymerase [Mycobacterium vanbaalenii PYR-1]
 gi|119955356|gb|ABM12361.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium
            vanbaalenii PYR-1]
          Length = 1098

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 302/1031 (29%), Positives = 499/1031 (48%), Gaps = 73/1031 (7%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E S  +  L  HS+YS L+GA +   ++++ A     AIA+TD + L+  + F++ A   
Sbjct: 58   ESSTPYAELHAHSAYSFLDGASTPEELVEEAARLNLRAIALTDHDGLYGVVRFAEAAREL 117

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
             +  + G +L      +L    +   P P  P +++L    EGY+RL   ++  +L    
Sbjct: 118  DVATVFGAEL------SLGGGTRTDVPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGE 171

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184
            K  +R     L E       +LTG   G + +A      + AE  L      FG DR+ V
Sbjct: 172  KGVLRYDFDALTEAAGGHWQILTGCRKGHVRQALSTGGPEAAEAALADLVDRFGPDRVTV 231

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQ 242
             L  H    D  R + +  LA    L +VAT  + F           + A+ A +++   
Sbjct: 232  ELTHHGHPLDDERNAALAALAPRFGLGVVATTAAHFAEPARGRLAMAMGAIRARNSIDEA 291

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                      +L++  EM  +F+  PE +    E+  +C+F L + AP LP F   +   
Sbjct: 292  AGYLAPLGGSHLRSGDEMARMFAHCPEVVTAAAELGEQCAFGLALIAPQLPPFDVPD--- 348

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                E + LR+  + G   R      A   +AQ     ++ EL VI ++ F GYFL+V D
Sbjct: 349  -GHTESSWLRHLVMQGARERYGPPERASRAYAQ-----IEHELAVIEQLNFPGYFLVVHD 402

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
              ++ + NNI +  GRGS A S   YAL +T++DP+   LLFERFL+P R   PD DID 
Sbjct: 403  ITRFCRDNNI-LSQGRGSAANSAVCYALKVTNVDPIANDLLFERFLSPARDGPPDIDIDI 461

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D R+  I+YV  +YG E  AQ+    + + ++A+RD+ RAL     Q D   K +   
Sbjct: 462  ESDLRENAIQYVYQRYGREYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQVSQ- 520

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                     +AD +   +  +  P VD    +++++  L RH   H+ G+VI DRP++ +
Sbjct: 521  ------WGNLADATHVED--IPGPVVD----LAKQISNLPRHMGIHSGGMVICDRPIADV 568

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
             P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+ +G++VDL+ +
Sbjct: 569  CPVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDLAKL 628

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
               +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V 
Sbjct: 629  DLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRMFYDLVVEVALIRPGPIQGGSVH 688

Query: 661  -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG- 718
             Y  R+NG+E +   HP ++  L++T GV ++QEQ+MQ+A   +G++ +EAD LRRAMG 
Sbjct: 689  PYIKRRNGQEAVTYDHPSMESALRKTLGVPLFQEQLMQLAVDCAGFTPAEADQLRRAMGS 748

Query: 719  KKIKEEMDKQKERFISG-ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            K+  E+M + + RF  G A  +G++  +A  I+E L  FA++GF +SH+ ++A + + ++
Sbjct: 749  KRSTEKMRRLRGRFFDGMAELHGVTGDVAQRIYEKLEAFANFGFPESHSLSFASLVFYSS 808

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--I 835
            W K H+P  F AA +  +       +    DAR+  + +  P VN       + ++   +
Sbjct: 809  WFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVVVHGPDVNAGLAHATLENHGLDV 868

Query: 836  YYSLAAIKGVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               L  ++ +G   A R + E  A  PF SL D   RV   +L+    E+L  AGAL CF
Sbjct: 869  RLGLGGVRHIGDELAERLVGERKAHGPFTSLTDLTRRV---QLSVPQTEALATAGALGCF 925

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            G +R + L +       A      R ++   +     G+ S   +L   +        E 
Sbjct: 926  GITRREGLWA-------AGAAATERPDRLPGV-----GSSSHVPSLPGMT--------EL 965

Query: 955  EQRVLGFYFSG-----HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
            E  V   + +G     +P +  +  L  MG+   ++ ++   G  + +A  V  +Q+  T
Sbjct: 966  ELTVADVWATGVSPDRYPTEFLREDLDAMGVVPADQLLSLPDGTRVLVAGAVTHRQRPAT 1025

Query: 1010 RKGSRIGWVTF 1020
             +G     VTF
Sbjct: 1026 AQG-----VTF 1031


>gi|325687799|gb|EGD29819.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK72]
          Length = 1069

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 265/789 (33%), Positives = 411/789 (52%), Gaps = 51/789 (6%)

Query: 250  PDH-YLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+H +L     +   F +  PE+L N  ++ R   + +      LPRF      + ++  
Sbjct: 219  PNHEFLLAPDALAGAFKETFPESLANLEKLVRDVHYDINRELK-LPRF------NRERPA 271

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL+ ++ AGL+ R   G +        Y++RLD EL VI +M F  YFLIV D +++ 
Sbjct: 272  VEELQERSEAGLKKRGLTGKL--------YQERLDQELAVIHQMGFDDYFLIVWDLLRFG 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R
Sbjct: 324  RSQGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYR 383

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +   
Sbjct: 384  PEFIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT- 442

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+  
Sbjct: 443  --SAYEKNMGFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL-- 498

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D 
Sbjct: 499  KYGEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIAEIDLEDA 558

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+
Sbjct: 559  DTLKLFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKH 618

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM 
Sbjct: 619  GLEQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMH 678

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + +E F++GA K G S+T A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 679  RMQEDFVAGALKLGHSETKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDV 738

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F    +     +      +  DA  F+ +  P S+N      K  D +I+  L  IKG+ 
Sbjct: 739  FFDVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLP 792

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L 
Sbjct: 793  RDLAYWIIEERQNATFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLP 852

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFS 964
            N+                 +FA E G+     T      ++ S   +FE EQ ++G   S
Sbjct: 853  NL----------------FVFADELGSLFADTTYSWTEAQDFSDAEKFELEQSIIGVGLS 896

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HPL      L K   + +         +  R+ A V S +  +T+KG  + ++  S+  
Sbjct: 897  DHPL----VKLAKEADQPFSWISDLTENSRARILAEVQSIKTIRTKKGENMAFLQVSDTK 952

Query: 1025 KEYEANFFP 1033
            K+ +   FP
Sbjct: 953  KKLDVTLFP 961


>gi|315445823|ref|YP_004078702.1| DNA polymerase III subunit alpha [Mycobacterium sp. Spyr1]
 gi|315264126|gb|ADU00868.1| DNA polymerase III, alpha subunit [Mycobacterium sp. Spyr1]
          Length = 1099

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 277/909 (30%), Positives = 456/909 (50%), Gaps = 43/909 (4%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           +S  +  L  HS+YS L+GA +   ++++ +     A+A+TD + L+  + F++ A    
Sbjct: 60  RSMPYAELHAHSAYSFLDGASTPEELVEEASRLGLRALALTDHDGLYGVVRFAEAAKELD 119

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           +  + G +L      +L    +   P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 120 VDTVFGAEL------SLGGGTRTDVPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 173

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
             +R     L E       +LTG   G + +A        AE  L      FG +R+ V 
Sbjct: 174 GVLRYDFDALTEAAGGHWQILTGCRKGHVRQALLRGGDSAAEAALADLVDRFGRERVTVE 233

Query: 186 LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQK 243
           L  H    D  R + +  LA    L ++AT  + F           + A+ A +++    
Sbjct: 234 LTHHGHPLDDERNAALAALAPRFGLTVIATTAAHFAEPSRGRLAMAMGAIRARNSIDEAA 293

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                    +L++  EM  +F+  PE +    ++  +C+F L + AP LP F        
Sbjct: 294 GYLAPLGGSHLRSGEEMARVFAHCPEVVTAAADLGEQCAFGLALIAPQLPPFEVP----A 349

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              E + LR+  + G   R      A   +AQ     ++ EL VI ++ F GYFL+V D 
Sbjct: 350 GHTENSWLRHLVMQGARERYGPPERASRAYAQ-----IEHELRVIEQLNFPGYFLVVHDI 404

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            ++ ++N I +  GRGS A S   YAL +T++DP+   LLFERFL+P R   PD DID  
Sbjct: 405 TRFCRENAI-LSQGRGSAANSAVCYALKVTNVDPIANGLLFERFLSPARDGPPDIDIDIE 463

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            D R++ I+YV  +YG E  AQ+    + + ++A+RD+ RAL     Q D   K I    
Sbjct: 464 SDLREKAIQYVYERYGREYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQISQ-- 521

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                   +AD +   +  + +P +D  ++IS     L RH   H+ G+VI DRP++ + 
Sbjct: 522 -----WGNLADATHVED--IPEPVIDLAMQISH----LPRHMGIHSGGMVICDRPIADVC 570

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
           P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+ +G++VDL+ + 
Sbjct: 571 PVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGLEVDLAKLD 630

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  
Sbjct: 631 LSEPAVYEMLQRADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 690

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-K 719
           Y  R+NG+E +   HP ++  L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG K
Sbjct: 691 YIKRRNGQEPVTYEHPSMERALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 750

Query: 720 KIKEEMDKQKERFISG-ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           +  E+M + + RF  G A  +GIS  +A  I+E L  FA++GF +SH+ ++A + + ++W
Sbjct: 751 RSTEKMRRLRGRFFEGMAELHGISGDVARRIYEKLEAFANFGFPESHSLSFASLVFYSSW 810

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IY 836
            K H+P  F AA +  +       +    DAR+  + +  P VN       + ++   + 
Sbjct: 811 FKLHHPAAFCAALLRAQPMGFYSPQTLVADARRHGVDVHGPDVNASLAHATLENHGLDVR 870

Query: 837 YSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             L +I+ +G   A+ ++E    + PF SL D   RV   +L     E+L  AGAL CFG
Sbjct: 871 LGLGSIRHIGDELAQRLVEDRKLNGPFVSLTDLTRRV---QLTVPQTEALATAGALGCFG 927

Query: 896 YSRMQLLQS 904
            +R + L +
Sbjct: 928 ITRREGLWA 936


>gi|325689997|gb|EGD32001.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK115]
          Length = 1069

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 263/789 (33%), Positives = 410/789 (51%), Gaps = 51/789 (6%)

Query: 250  PDH-YLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+H +L     +   F +  PE+L N  ++ R   + +      LPRF      + ++  
Sbjct: 219  PNHEFLLAPDALAGAFKETFPESLANLEKLVRHVHYDINRELK-LPRF------NRERPA 271

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              ELR ++ AGL+ R   G +        Y++RLD EL VI +M F  YFLIV D +++ 
Sbjct: 272  VEELRERSEAGLKKRGLTGKL--------YQERLDQELAVIHQMGFDDYFLIVWDLLRFG 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R
Sbjct: 324  RSQGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYR 383

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +   
Sbjct: 384  PEFIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDS--- 440

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+  
Sbjct: 441  LTSAYEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDSDLTDQIPL-- 498

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D 
Sbjct: 499  KYGEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIADIDLEDA 558

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+
Sbjct: 559  DTLKLFAAGQTKGIFQFEQPGAISLLKRVQPICFEEVVATTSLNRPGASDYIDNFVKRKH 618

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM 
Sbjct: 619  GLEQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMH 678

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 679  RMQEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDV 738

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F    +     +      +  DA  F+ +  P S+N      K  D +I+  L  IKG+ 
Sbjct: 739  FFDVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLP 792

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L 
Sbjct: 793  RDLAYWIIEERQNAVFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLP 852

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFS 964
            N+                 +FA E G+     T      ++ S   +FE EQ ++G   S
Sbjct: 853  NL----------------FVFADELGSLFADTTYSWTEAQDFSDTEKFELEQSIIGVGLS 896

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HPL      L K   + +         +  R+ A V + +  +T+ G  + ++  S+  
Sbjct: 897  DHPL----VKLAKEAAQPFSWIAELTENSRARILAEVQTIKTIRTKNGENMAFLQVSDTK 952

Query: 1025 KEYEANFFP 1033
            K+ +   FP
Sbjct: 953  KKLDVTLFP 961


>gi|293192907|ref|ZP_06609751.1| error-prone DNA polymerase [Actinomyces odontolyticus F0309]
 gi|292819963|gb|EFF78962.1| error-prone DNA polymerase [Actinomyces odontolyticus F0309]
          Length = 1094

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 288/957 (30%), Positives = 461/957 (48%), Gaps = 108/957 (11%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS+++ L+G      ++++ A     A+AI D + ++S ++ +  A  AG+  +
Sbjct: 7   YAELHAHSAFTFLDGTDEPARMVEEAARLGLDALAILDVDGMYSTVQTTMAARTAGLPIV 66

Query: 71  IGCQLDIDMQDNLK-------MTNQGKTPFPTVPSIVLLVSTAE--GYQRLIELVSRMYL 121
            G +L +   D L+           G  P    P + L +  A   GY  L+  +S   L
Sbjct: 67  YGAELTL-APDALRGIVPGSSAPGWGLAPGAEDPGMRLPIVAASPTGYAHLVGAMSARAL 125

Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180
            + G+++ R  L  L E G E L++LTGG  GP+ RA     +  A + L      FG D
Sbjct: 126 SEPGQRNPRHDLVNLSEAGGE-LVVLTGGRRGPLMRALRAGGTAPARRVLDGLVDAFGCD 184

Query: 181 RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
           ++ V  Q  RG +      + +LA      LVAT+ +   S       D+L A    + +
Sbjct: 185 QVLVEWQAARGDEDEVGDVLAELARASGTRLVATSGARMSSPSKQALGDILTATRLGSSL 244

Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
           ++ +        +L++ +EM  +    P+AL+N  E+A  C+F L++ AP LPR    + 
Sbjct: 245 NEAEAHLGAHRSFLRSPAEMARLHGAHPQALDNACEVAAACAFDLRLVAPRLPR---TQV 301

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D     ++ L +    G  VR      ++ +H + + + ++ EL VI R+ F+GYFLIV
Sbjct: 302 PD-GHTPDSWLAHCTYEGASVRYG----SRAHHPRAW-ETIEHELGVIERLGFAGYFLIV 355

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            D + +  +N I +  GRGS A S   Y L IT +D +R +LLFERFL+  R   PD D+
Sbjct: 356 KDIVDFCARNGI-LCQGRGSAANSAVCYCLGITAVDAVRHNLLFERFLSDARSGPPDIDV 414

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           D    RR+EVI+YV + +G +R AQ+    + + ++A+RDV RAL  P            
Sbjct: 415 DIEACRREEVIQYVYDTFGRDRAAQVANVITYRPRSAIRDVARALGYPAGTA-------- 466

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                          + + + R   P +  + + +Q L  L RH   H+ G+V+ D+P+S
Sbjct: 467 ---------------TAWSQGRGEVPPL--VGDAAQALARLPRHMGIHSGGMVLTDQPVS 509

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
           ++ P+         V Q++ +    AGL+KFD L L  LT L+ + D L   G +     
Sbjct: 510 RICPVGWAAMPGRTVLQWDKEDCADAGLVKFDLLSLGMLTALRVAFDELRAGGARAGEAS 569

Query: 596 ------------------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
                             + L  +P +D   Y LL    T+G+FQ+ES      L  ++P
Sbjct: 570 NQLRGWAPRVVEGREGQPLGLHTLPEEDPRVYDLLCAADTVGVFQVESRAQMNTLPRLKP 629

Query: 638 DCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            C  DI+  V+L RPGPI    V  Y  R++G+E++  +HPL++P L++T GV ++QEQ+
Sbjct: 630 RCFYDIVVEVALIRPGPIQGRSVNPYLRRRSGREEVTYLHPLLEPALRQTLGVPLFQEQL 689

Query: 696 MQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
           M+IA   +G S + AD LRRAMG K+  E M+  K   ++G  + GI       IFE L 
Sbjct: 690 MRIATDAAGLSGARADQLRRAMGAKRSPERMEALKGDLMAGMEERGIDAPTRERIFEQLK 749

Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
            FAD+GF +SH+ ++A I Y ++W+K H P  F AA +  +           QDAR+  +
Sbjct: 750 GFADFGFPESHSFSFAHIVYASSWLKVHAPEHFYAAILASQPMGFYSPATLVQDARRHGV 809

Query: 815 QIMPPSVNTPCVDF---KVGDNR----------------------------IYYSLAAIK 843
           +++ PSVN   VD    +VGD+                             +   L+ ++
Sbjct: 810 RVVGPSVNDSLVDASVQRVGDDEAGESYNPGRPEALPSRGTVALDVDRELAVRIGLSQVR 869

Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
           G+G    R I+EA     F S  D   R     ++   +E L  AGAL+C G  R +
Sbjct: 870 GLGAVAER-IVEARRQGAFTSQADLARRA---HVSASAMEKLAMAGALECLGVGRRE 922


>gi|298231030|ref|ZP_06964711.1| DNA polymerase III DnaE [Streptococcus pneumoniae str. Canada
           MDR_19F]
          Length = 863

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 260/710 (36%), Positives = 395/710 (55%), Gaps = 58/710 (8%)

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
            P+AL+N  ++    S+ L      LPRF      +  +    ELR +A  GL       
Sbjct: 35  FPQALDNLEKLISGISYDLDTSLK-LPRF------NPARPAVEELRERAELGL------- 80

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
            + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N   +G GRGS  GS+ 
Sbjct: 81  -VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNGYYMGMGRGSAVGSLV 139

Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
           +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + IRYV NKYG +  AQI
Sbjct: 140 SYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFIRYVGNKYGSKHAAQI 199

Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DPAHPVSLQAIADDSRFREAR 502
           +TF +  AK ALRDV +   +P  ++  + K I        A+  +LQ       FR+  
Sbjct: 200 VTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKSAYEGNLQ-------FRQQI 252

Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM-YRDVRSDLPVTQFNMK 561
            +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+ Y D   ++P+TQ++  
Sbjct: 253 NSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYGD---EIPLTQYDAH 309

Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
            +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET  L  +  T GI
Sbjct: 310 GVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLEDKETLDLFASGNTKGI 369

Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
           FQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E++  + P+++ 
Sbjct: 370 FQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEEVTVLDPVLED 429

Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
           +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +  FI G+ + G
Sbjct: 430 ILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRVSFIQGSLEAG 489

Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F    + L   N +
Sbjct: 490 HTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFY--QVMLNSSNSD 547

Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
               +  DA +   ++   S+NT     K+ +  IY  L +IKGV    A  I+E   ++
Sbjct: 548 ----YLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIKGVSNDLALWIIE---NR 600

Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
           P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +          
Sbjct: 601 PYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE---------- 650

Query: 921 NKHENIFAHEKGT-FSDKI-TLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                 F  E G+ F D I + ++        +F  EQ +LG   S HPL
Sbjct: 651 ------FVKELGSLFGDAIYSWQESEDWTEQEKFYMEQELLGIGVSKHPL 694


>gi|328945925|gb|EGG40073.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK1087]
          Length = 1069

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 264/789 (33%), Positives = 411/789 (52%), Gaps = 51/789 (6%)

Query: 250  PDH-YLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+H +L     +   F +  PE+L N  ++ R   + +      LPRF      + ++  
Sbjct: 219  PNHEFLLTPDALAGAFKETFPESLANLEKLVRYVHYDINRELK-LPRF------NRERPA 271

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              ELR ++ AGL+ R   G +        Y++RL+ EL VI +M F  YFLIV D +++ 
Sbjct: 272  VEELRERSEAGLKKRGLTGKL--------YQERLNQELAVIHQMGFDDYFLIVWDLLRFG 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R
Sbjct: 324  RSQGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYR 383

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +   
Sbjct: 384  PEFIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT- 442

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+  
Sbjct: 443  --SAYEKNMGFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL-- 498

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D 
Sbjct: 499  KYGEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIADIDLEDA 558

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ET  L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+
Sbjct: 559  ETLKLFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKH 618

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM 
Sbjct: 619  GLEQVELIDESLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAAEMH 678

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 679  RMQEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAFFKAHYPDV 738

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F    +     +      +  DA  F+ +  P S+N      K  D +I+  L  IKG+ 
Sbjct: 739  FFDVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLP 792

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L 
Sbjct: 793  KDLAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILVNLP 852

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFS 964
            N+                 +FA E G+     T      ++ S   +FE EQ ++G   S
Sbjct: 853  NL----------------FVFADELGSLFADTTYSWTEAQDFSDAEKFELEQSIIGVGLS 896

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HPL      L K   + +         +  R+ A V + +  +T+KG  + ++  S+  
Sbjct: 897  DHPL----VKLAKEADQPFSWISELTENSRARILAEVQTIKTIRTKKGENMAFLQVSDTK 952

Query: 1025 KEYEANFFP 1033
            K+ +   FP
Sbjct: 953  KKLDVTLFP 961


>gi|315222678|ref|ZP_07864567.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
 gi|315188364|gb|EFU22090.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
          Length = 1033

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 259/789 (32%), Positives = 418/789 (52%), Gaps = 54/789 (6%)

Query: 250  PDH-YLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+H YL +  +    F +  PE+L+N  ++     + +      LPRF      + ++  
Sbjct: 186  PNHDYLLSPEQFTQSFQENYPESLDNLKQLVAGIHYEINTELK-LPRF------NPERPA 238

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL+ +A AGLE +     +        Y++RL  EL+VI +M F  YFLIV D +++ 
Sbjct: 239  IEELQERAEAGLEKKRLNSLV--------YKERLQQELSVIHQMGFDDYFLIVWDLLRFG 290

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     +G GRGS  GS+ AYAL IT IDP+  +LLFERFLN +R +MPD DID     R
Sbjct: 291  RSQGYYMGMGRGSAVGSLVAYALEITGIDPVEKNLLFERFLNVERYTMPDIDIDIPDVYR 350

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + + I        
Sbjct: 351  PEFIRYVRDRYGTMHAAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITRKIS---FRDN 407

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A   +  FR+   +     +  EI++++EG  R  S HAAG+V+ D  L+  +P+  
Sbjct: 408  LTSAYEKNMSFRQIINSKLEYQKAFEIAKRIEGNPRQTSIHAAGVVMSDNDLTDHIPL-- 465

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L + GV +D++ I  +D 
Sbjct: 466  KYGEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEAALEKYGVAIDIAKINLEDT 525

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L +   T GIFQ E +G    L+ +QP   E+++A  SL RPG  D I  +  RK+
Sbjct: 526  ATLQLFSAGRTKGIFQFEQAGAINLLKRVQPTQFEEVVATTSLNRPGASDYIDNFVRRKH 585

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+EK+  +   ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM 
Sbjct: 586  GQEKVEILDSSLEDILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNVVEMH 645

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +  F++GA + G S+T A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 646  KMEAEFVTGALELGHSETKAKEVFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDI 705

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F    +     +      +  DA +F+ Q+   ++N      K  D +IY  L  IKG+ 
Sbjct: 706  FFDIMLNYSSSD------YITDALEFDFQVASLNINNIPYRDKFQDKQIYLGLKNIKGLP 759

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I+E   ++PF ++EDF  ++ ++    +++  LV  G  D F  +R ++LQ+L 
Sbjct: 760  RDVAYWIIE---NRPFTNVEDFILKLPTQYHKVQLITPLVQVGLFDVFEKNRQKILQNLP 816

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN--SSVRFENEQRVLGFYFS 964
            N+                 +FA E G+            E+   + +FE E+ ++G   S
Sbjct: 817  NL----------------FVFADELGSLFADTNYSWTEAEDYTEAEKFELEKEIIGIGLS 860

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HPL      L K   + +      +  N+  +   ++S +  +T+ G  + ++  S+  
Sbjct: 861  EHPL----VKLAKSATQAFTPIQDLVENNHATILVEILSIRVIRTKTGENMAFLQVSDAK 916

Query: 1025 KEYEANFFP 1033
            ++ E   FP
Sbjct: 917  RKMEVTVFP 925


>gi|125717690|ref|YP_001034823.1| DNA polymerase III DnaE [Streptococcus sanguinis SK36]
 gi|125497607|gb|ABN44273.1| DNA-polymerase III alpha-chain, putative [Streptococcus sanguinis
            SK36]
          Length = 1069

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 264/789 (33%), Positives = 410/789 (51%), Gaps = 51/789 (6%)

Query: 250  PDH-YLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+H +L     +   F +  PE+L N  ++ R   + +      LPRF      + ++  
Sbjct: 219  PNHEFLLAPDALAGAFKETFPESLANLEKLVRDVHYDINRELK-LPRF------NRERPA 271

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              ELR ++ AGL+ R   G +        Y++RLD EL VI +M F  YFLIV D +++ 
Sbjct: 272  VEELRERSEAGLKKRGLTGKL--------YQERLDQELAVIHQMGFDDYFLIVWDLLRFG 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R
Sbjct: 324  RSQGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYR 383

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +   
Sbjct: 384  PEFIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT- 442

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+  
Sbjct: 443  --SAYEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL-- 498

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D 
Sbjct: 499  KYGEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLEKYKVDIEIAEIDLEDA 558

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+
Sbjct: 559  NTLKLFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKH 618

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM 
Sbjct: 619  GLEQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAAEMH 678

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 679  RMQEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAFFKAHYPDV 738

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F    +     +      +  DA  F+ +  P S+N      K  D +I+  L  IKG+ 
Sbjct: 739  FFDVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLP 792

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L 
Sbjct: 793  RDLAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLP 852

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFS 964
            N+                 +FA E G+     T      ++ S   +FE EQ ++G   S
Sbjct: 853  NL----------------FVFADELGSLFADTTYSWTEAQDFSDAEKFELEQSIIGVGLS 896

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HPL      L K   + +         +  R+ A V + +  +T+KG  + ++  S+  
Sbjct: 897  DHPL----VKLAKEADQPFSWISELTENSRARILAEVQTIKTIRTKKGENMAFLQVSDTK 952

Query: 1025 KEYEANFFP 1033
            K+ +   FP
Sbjct: 953  KKLDVTLFP 961


>gi|134103090|ref|YP_001108751.1| error-prone DNA polymerase [Saccharopolyspora erythraea NRRL 2338]
 gi|291003967|ref|ZP_06561940.1| error-prone DNA polymerase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915713|emb|CAM05826.1| DNA polymerase III, alpha subunit, putative [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 1056

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 287/909 (31%), Positives = 443/909 (48%), Gaps = 53/909 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS++S L+GA     ++ + A     AIA+TD + ++  + FS+ A   G++ +
Sbjct: 19  YAELHAHSNFSFLDGASHPEELVAESARLGLEAIALTDHDGMYGVVRFSEAAAEHGVRTV 78

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L + +        Q   P P    +++L     GY RL   +S   L  Q K    
Sbjct: 79  FGAELSLGL-----TAAQTGVPDPEGNHLLVLARDPGGYARLCREISSAQLAGQEKGRPT 133

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL-QR 188
             L  L E   +  ++LTG   G +  A        A   L     LFG + + V L  +
Sbjct: 134 YRLEQLAEAAEDHWLVLTGCRKGAVRSALAEGGPAAAAAELDRLVALFGGENVAVELTDQ 193

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR--P 246
               D  R   +  LA    LP VATN + F    +     V+ A+     + + D   P
Sbjct: 194 DLPTDSERNDVLFALARDAGLPAVATNGAHFAGPWNGRMASVVAAIRARRGLDEMDGWLP 253

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               +H L++  EM   F+  P A+E    + R C+F L++ AP LP F   E     + 
Sbjct: 254 AWAGNH-LRSGEEMAERFARYPGAVETAARLGRECAFDLRLVAPRLPPFDVPE----GRT 308

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
           E   LR     G   R          +AQ     ++ EL VI ++ F GYFL+V D + +
Sbjct: 309 EAEWLRELTYRGALRRYGLPQDNPAAYAQ-----IEHELAVIEKLDFPGYFLVVHDIVSF 363

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             +  I +  GRGS A S   +AL IT+ DP+R+ LLFERFL P+R   PD D+D   DR
Sbjct: 364 CGEMGI-LCQGRGSAANSAVCFALRITNADPVRYDLLFERFLAPERDGPPDIDLDIESDR 422

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+E I+YV  KYG    AQ+    S + K+A+RDV RAL     Q D   K I +     
Sbjct: 423 REEAIQYVYRKYGRTHAAQVANVISYRPKSAVRDVARALGYSPGQQDAWSKQIEH----- 477

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                + DD             D++ E++ +L G  RH   H+ G+VI  +P+S++ P+ 
Sbjct: 478 --WGPLPDDGEV---------PDQVRELAGELMGYPRHLGIHSGGMVICHQPVSEVCPVE 526

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                   V Q++       GL+KFD LGL  L+ L  ++D   +  G++VDL  +   D
Sbjct: 527 WARMPGRTVLQWDKDDCASVGLVKFDLLGLGMLSALHYAIDLAREHHGIEVDLGELDLAD 586

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
            E Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI    V  Y  
Sbjct: 587 DEVYAMLRRADAVGVFQVESRAQLATLPRLKPRKFYDLVVEVALIRPGPIQGGSVHPYIR 646

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
           R+NG+E     HPL+   L++T GV ++QEQ+MQ+A  ++G+S  EAD LRRAMG K  E
Sbjct: 647 RRNGEEDWDYEHPLMAAALEKTLGVPLFQEQLMQLAVDIAGFSAGEADELRRAMGSKRSE 706

Query: 724 E-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
           E M + + R   G + NGI+  +A  I++ L  FA++GF +SHA ++AV+ + ++W K +
Sbjct: 707 ERMARLRGRLFEGMAVNGITGELAERIYQQLLAFANFGFPESHALSFAVLVFASSWFKRY 766

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT--------PCVDFKVGDNR 834
           YP  F AA +  +       +    DAR+  +++  P VN         P  + + G   
Sbjct: 767 YPAVFCAALLKAQPMGFYSPQSLVADARRHGVRVHGPDVNASRGQADLEPDAESE-GGQA 825

Query: 835 IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
           +   LA+++ +G + A  ++ E + + P+  + D   R+    LN   +E+L  AGA  C
Sbjct: 826 VRLGLASVRTLGDSVAEQLVAERTENGPYTGMADLSRRM---SLNAAQMEALATAGAFGC 882

Query: 894 FGYSRMQLL 902
           FG SR + L
Sbjct: 883 FGLSRREAL 891


>gi|319938926|ref|ZP_08013290.1| DNA-directed DNA polymerase subunit III alpha [Streptococcus
            anginosus 1_2_62CV]
 gi|319811976|gb|EFW08242.1| DNA-directed DNA polymerase subunit III alpha [Streptococcus
            anginosus 1_2_62CV]
          Length = 1033

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 301/1029 (29%), Positives = 505/1029 (49%), Gaps = 115/1029 (11%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             L   + Y+ ++  +S+   ++         + I D +NL+ A  F + A   GIQP++G
Sbjct: 4    QLDTKTVYTFMDSLISIKKYVETAKNLGYQTLGIMDIDNLYGAYHFMETATEQGIQPLLG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             ++ +D            T  P   ++  L   ++GY+ L++L S + ++ + K      
Sbjct: 64   VEMTLDY-----------TGLPL--NLRFLALDSQGYRNLMKL-STLKMIGKSK------ 103

Query: 133  LSW--LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              W   Q +  EG+ ++      P+     F   +  +          G   Y+ +    
Sbjct: 104  --WEEFQHL-LEGIAIIV-----PV-----FEDIEALD---------LGREFYIGVF--- 138

Query: 191  GYDRYRESQVVQLAYTH-ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                       + A++H  LPL       +    D E   +L A+  ++ + +       
Sbjct: 139  -------PDTPKKAFSHATLPLQTVR---YFDAGDLETLQMLCAIRENSSLREVGN---L 185

Query: 250  PDH-YLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+H YL +  +    F +  PE+L+N   +     + +      LPRF      + ++  
Sbjct: 186  PNHEYLLSSEQFTQSFQENYPESLDNLKRLVAGIHYEINTELK-LPRF------NPERPA 238

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL+ +A AGLE +     +        Y++RL  EL+V+ +M F  YFLIV D +++ 
Sbjct: 239  AEELQERAEAGLEKKRLNSLV--------YKERLQQELSVVHQMGFDDYFLIVWDLLRFG 290

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     +G GRGS  GS+ AYAL IT IDP+  +LLFERFLN +R +MPD DID     R
Sbjct: 291  RSQGYYMGMGRGSAVGSLVAYALEITGIDPVEKNLLFERFLNVERYTMPDIDIDIPDIYR 350

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + + I        
Sbjct: 351  PEFIRYVRDRYGTMHAAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITRKIS---FRDN 407

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A   +  FR+   +     +  EI++K+EG  R  S HAAG+V+ D  L+  +P+  
Sbjct: 408  LTSAYEKNMSFRQIINSKLEYQKAFEIAKKIEGNPRQTSIHAAGVVMSDNDLTDHIPL-- 465

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L + GV +D++ I  +D 
Sbjct: 466  KYGEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEAALEKYGVAIDIAKINLEDA 525

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T GIFQ E +G    L+ +QP   E+++A  SL RPG  D I  +  RK+
Sbjct: 526  ATLQLFAAGRTKGIFQFEQAGAINLLKRVQPAQFEEVVATTSLNRPGASDYIDNFVRRKH 585

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+EK+  + P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM 
Sbjct: 586  GQEKVEMLDPSLEDILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNIAEMH 645

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +  F++GA + G S+T A  +F ++ KFA YGFN+SHA AY+ +++Q  + K HYP  
Sbjct: 646  KMEAEFVTGALELGHSETKAKEVFAVMEKFAGYGFNRSHAYAYSALAFQLTYFKAHYPDI 705

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F    +     +      +  DA +F+ Q+   ++N      K  D +IY  L  IKG+ 
Sbjct: 706  FFDIMLNYSSSD------YITDALEFDFQVASLNINNIPYRDKFQDKQIYLGLKNIKGLP 759

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I+E   ++PF ++EDF  ++ ++    +++  LV  G  D F  +R ++LQ+L 
Sbjct: 760  RDFAYWIIE---NRPFTNVEDFIMKLPTQYHKIQLITPLVQVGLFDVFEKNRQKILQNLP 816

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN--SSVRFENEQRVLGFYFS 964
            N+                 +FA E G+            E+   + +FE E+ ++G   S
Sbjct: 817  NL----------------FVFADELGSLFADTNYSWTEAEDYTEAEKFELEKEIIGVGLS 860

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HPL      L K   + +      +  N+  +   ++S +  +T+ G  + ++  S+  
Sbjct: 861  EHPL----VKLAKTATQSFTPIQELVENNHATILGEILSIRVIRTKTGENMAFLQVSDAK 916

Query: 1025 KEYEANFFP 1033
            ++ E   FP
Sbjct: 917  RKMEVTVFP 925


>gi|26553651|ref|NP_757585.1| DNA polymerase III DnaE [Mycoplasma penetrans HF-2]
 gi|26453657|dbj|BAC43989.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
          Length = 990

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/706 (35%), Positives = 393/706 (55%), Gaps = 33/706 (4%)

Query: 212 VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
           +A N + + ++ D    + L A+ ++  VS  D      D  L   SE VS+F+D     
Sbjct: 151 IAFNEARYFNKNDKRVFNALQAIKNNRTVSI-DELEEGQDLSLLTESESVSLFND----- 204

Query: 272 ENTVEIARRCSFILQVHAPILPRFIEKECDDIQK-EEENELRNKAVA------GLEVRLA 324
              V+I    + I +V+  I     E E ++I K   E+ L +KA+       GL  ++ 
Sbjct: 205 ---VQIENLNNEIKEVNLEI-----EFEKNNIIKYPNESNLSDKALLHKFCMDGLNEKIF 256

Query: 325 QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              I        Y +R+++EL +I  M F+ YFL+V DFI  AK   I +GPGRGS AGS
Sbjct: 257 NKEIDSN-SKDTYIERMEYELQIIDDMGFNDYFLVVQDFINDAKNKGILIGPGRGSAAGS 315

Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
           + AY L IT+ID ++++LLFERFLNP R++MPD DID    RRDEV+ Y+  KYG++ VA
Sbjct: 316 LIAYLLGITEIDSIKYNLLFERFLNPGRITMPDIDIDIMDIRRDEVVEYLFEKYGYDHVA 375

Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            IITF  ++AK ALRD+GR L +    ++ +CK I  D       + +A+    ++ + A
Sbjct: 376 HIITFQKIKAKMALRDIGRILNIDLKIINSICKSITKDLE-----EDLANAINTKKLQDA 430

Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
             S   L +++  + G  R    HAAG+V+  + L+ +VP+   V  ++  TQ++M ++E
Sbjct: 431 YKSYKDLFDLAIGIMGCPRQVGIHAAGVVLSQKVLTDIVPIQTSVNGEI-TTQYSMDYLE 489

Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
             GLIK D LGL  L+ +      +    G++++L+ +  +D   +  L    TLGIFQL
Sbjct: 490 DLGLIKMDLLGLTNLSTINHVCKLIKMNHGIEINLAKLNLEDQNVFLDLQQGHTLGIFQL 549

Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
           ES GM   ++ ++P CIEDI    +L+RPGP+ NI  +  R+ G EK+  I      +L+
Sbjct: 550 ESEGMTSVVKQVKPVCIEDISICSALFRPGPMQNIKPFVRRREGFEKVEYIDVKNKDILE 609

Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            T G+I+YQEQV+ + + ++ +SLSEAD+ RR + KK   E+D  K+ F   A KN  ++
Sbjct: 610 PTHGIIVYQEQVINLVRRIANFSLSEADMFRRIISKKKGHELDNFKKMFFENALKNDYTQ 669

Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                I+  +  FADYGFN SH+ AY++I Y  A++K +YP+EF+   MT   ++  KI 
Sbjct: 670 DRLEQIYNYIYTFADYGFNHSHSVAYSLIGYWMAYLKHYYPIEFMIILMTFSENDKNKID 729

Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            +  + ++ NI I  P +N     F +   N I + L +IKG+G  T++ I+E   +   
Sbjct: 730 LYVNECKRLNINIRKPDINISNKSFGLYKKNTILFGLNSIKGIGVETSKKIIEIRTNNKD 789

Query: 863 DSLEDFCS---RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
               DFC    ++ S K+    LE+L+ AG  D F  S+  +L++L
Sbjct: 790 KKFSDFCEAIKKLSSNKVGISTLETLINAGTFDGFKLSKKYMLENL 835


>gi|229489515|ref|ZP_04383378.1| DNA polymerase III, alpha subunit family [Rhodococcus erythropolis
           SK121]
 gi|229323612|gb|EEN89370.1| DNA polymerase III, alpha subunit family [Rhodococcus erythropolis
           SK121]
          Length = 1072

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 284/913 (31%), Positives = 455/913 (49%), Gaps = 64/913 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS++S L+GA     ++++       AIA+TD +  +  + F++ A   G++ +
Sbjct: 38  YAELHAHSAFSFLDGASPPEELVEEAVRLGLEAIAVTDHDGFYGVVRFAEAAREWGMRTV 97

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L +D        + G T       +++L    EGY+RL   ++  +L    K  ++
Sbjct: 98  FGAELSLDSVPRTGTADPGGT------HLLVLARGQEGYRRLSREIAAAHLAGGEKGKLQ 151

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                L E       +LTG   G + +A      + A   L    + FG +R+ V L  H
Sbjct: 152 YDYDVLTEAAGGHWQILTGCRKGHVRQALTSGGREAAADALGDLVERFGAERVSVELTHH 211

Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D  R + + +LA  H L  VAT  + F +          +A+A + V S++     
Sbjct: 212 GLAEDDERNAVLAELAREHGLRTVATTAAHFAAPPRRR-----LAMAMAAVRSRQSLDEA 266

Query: 249 ------TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                 T   +L++ +EM ++FS  PEA+    ++ R C+F L++ AP LP F      D
Sbjct: 267 AGWLAPTGGAHLRSGAEMAALFSLYPEAVSGAADLGRECAFDLKLIAPKLPPF------D 320

Query: 303 IQK--EEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
           +     E + LR   + G   R    +GA       + Y+Q L+ EL +I  + F GYFL
Sbjct: 321 VPAGHTEASWLRELTMVGALERYGPPEGA------PKAYKQ-LEHELAIIEGLNFPGYFL 373

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           +V D + + K N+I +  GRGS A S   YA+ IT++DP+R  LLFERFL P+R   PD 
Sbjct: 374 VVHDIVSFCKNNDI-LCQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLAPERDGPPDI 432

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+D   DRR+E I++V  KYG    AQ+    + + K+++RD+ RAL     Q D   K 
Sbjct: 433 DVDIESDRREEAIQHVYAKYGRTYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSK- 491

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDR 537
                   V      D +       AD  + R +LE++ ++EG  RH   H+ G+VI DR
Sbjct: 492 -------QVGRWGGIDKN-------ADTDIPRPVLELAAQIEGYPRHLGIHSGGMVICDR 537

Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596
           P++ + P+     ++  V Q++      AGL+KFD LGL  L+ L   +D +A+ +G+ V
Sbjct: 538 PIADVCPVEWARMANRSVLQWDKDDCAAAGLVKFDLLGLGMLSALHYMMDLVAEHKGITV 597

Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
           DL+ +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI 
Sbjct: 598 DLAQLDLSETAVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQ 657

Query: 657 NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
              V  Y  R+N  E +   HP ++  L+ T GV ++QEQ+MQ+A  ++G++ SEAD LR
Sbjct: 658 GGSVHPYIRRRNKLEPVSYDHPSLEKALERTLGVPLFQEQLMQMAVDVAGFTPSEADQLR 717

Query: 715 RAMG-KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           RAMG K+  E+M++ + RF  G    +GI   +A  I+E L  FA++GF +SH+ ++A +
Sbjct: 718 RAMGSKRSTEKMEQLRARFYQGMRDLHGIGDEVADRIYEKLYAFANFGFPESHSQSFAAL 777

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-- 830
            + ++W K H+P  F A  +  +       +    DAR+  +Q+    +N       V  
Sbjct: 778 VFYSSWFKLHHPAAFCAGLLRAQPMGFYSPQSLVADARRHGVQVHGADINVSLAHATVEA 837

Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           G   +   L  ++ +G   A  I+E      PF S  D   RV+   L     ESL  AG
Sbjct: 838 GGFEVRLGLGEVRNIGDALAEKIVEQRDLGGPFTSFLDLTGRVE---LTTAQAESLATAG 894

Query: 890 ALDCFGYSRMQLL 902
           AL  FG SR + L
Sbjct: 895 ALASFGISRREAL 907


>gi|154508747|ref|ZP_02044389.1| hypothetical protein ACTODO_01255 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798381|gb|EDN80801.1| hypothetical protein ACTODO_01255 [Actinomyces odontolyticus ATCC
           17982]
          Length = 1094

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 288/957 (30%), Positives = 461/957 (48%), Gaps = 108/957 (11%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS+++ L+G      ++++ A     A+AI D + ++S ++ +  A  AG+  +
Sbjct: 7   YAELHAHSAFTFLDGTDEPARMVEEAARLGLDALAILDVDGMYSTVQTTMAARTAGLPIV 66

Query: 71  IGCQLDIDMQDNLK-------MTNQGKTPFPTVPSIVLLVSTAE--GYQRLIELVSRMYL 121
            G +L +   D L+           G  P    P + L +  A   GY  L+  +S   L
Sbjct: 67  YGAELTL-APDALRGIVPGSSAPGWGLAPGAEDPGMRLPIVAASPTGYAHLVGAMSARAL 125

Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180
            + G+++ R  L  L E G E L++LTGG  GP+ RA     +  A + L      FG D
Sbjct: 126 SEPGQRNPRHDLVNLSEAGGE-LVVLTGGRRGPLMRALRAGGTAPARRVLDGLVDAFGCD 184

Query: 181 RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
           ++ V  Q  RG +      + +LA      LVAT+ +   S       D+L A    + +
Sbjct: 185 QVLVEWQAARGDEDEVGDVLAELARASGTRLVATSGARMSSPSKQALGDILTATRLGSSL 244

Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
           ++ +        +L++ +EM  +    P+AL+N  E+A  C+F L++ AP LPR    + 
Sbjct: 245 NEAEAHLGAHRSFLRSPAEMARLHGAHPQALDNACEVAAACAFDLRLVAPRLPR---TQV 301

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D     ++ L +    G  VR      ++ +H + + + ++ EL VI R+ F+GYFLIV
Sbjct: 302 PD-GHTPDSWLAHCTYEGASVRYG----SRAHHPRAW-ETIEHELGVIERLGFAGYFLIV 355

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            D + +  +N I +  GRGS A S   Y L IT +D +R +LLFERFL+  R   PD D+
Sbjct: 356 KDIVDFCARNGI-LCQGRGSAANSAVCYCLGITAVDAVRHNLLFERFLSDARSGPPDIDV 414

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           D    RR+EVI+YV + +G +R AQ+    + + ++A+RDV RAL  P            
Sbjct: 415 DIEACRREEVIQYVYDTFGRDRAAQVANVITYRPRSAIRDVARALGYPAGTA-------- 466

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                          + + + R   P +  + + +Q L  L RH   H+ G+V+ D+P+S
Sbjct: 467 ---------------TAWSQGRGEVPPL--VGDAAQALARLPRHMGIHSGGMVLTDQPVS 509

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
           ++ P+         V Q++ +    AGL+KFD L L  LT L+ + D L   G +     
Sbjct: 510 RICPVGWAAMPGRTVLQWDKEDCADAGLVKFDLLSLGMLTALRVAFDELRAGGARAGEAS 569

Query: 596 ------------------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
                             + L  +P +D   Y LL    T+G+FQ+ES      L  ++P
Sbjct: 570 NQLRGWAPRVVEGREGQPLGLHTLPEEDPRVYDLLCAADTVGVFQVESRAQMNTLPRLKP 629

Query: 638 DCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            C  DI+  V+L RPGPI    V  Y  R++G+EK+  +H L++P L++T GV ++QEQ+
Sbjct: 630 RCFYDIVVEVALIRPGPIQGRSVNPYLRRRSGREKVTYLHQLLEPALRQTLGVPLFQEQL 689

Query: 696 MQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
           M+IA+  +G S + AD LRRAMG K+  E M+  K   ++G  + GI       IFE L 
Sbjct: 690 MRIARDAAGLSGARADQLRRAMGAKRSPERMEALKGDLMAGMEERGIDAPTRERIFEQLK 749

Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
            FAD+GF +SH+ ++A I Y ++W+K H P  F AA +  +           QDAR+  +
Sbjct: 750 GFADFGFPESHSFSFAHIVYASSWLKVHAPEHFYAAILASQPMGFYSPATLVQDARRHGV 809

Query: 815 QIMPPSVNTPCVDF---KVGDNR----------------------------IYYSLAAIK 843
           +++ PSVN   VD    +VGD+                             +   L+ ++
Sbjct: 810 RVVGPSVNDSLVDASVQRVGDDEAGESYNPGRPEALPSRGTVALDVDRELAVRIGLSQVR 869

Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
           G+G    R I+EA     F S  D   R     ++   +E L  AGAL+C G  R +
Sbjct: 870 GLGAVAER-IVEARRQGAFTSQADLARRA---HVSASAMEKLAMAGALECLGVGRRE 922


>gi|41409574|ref|NP_962410.1| error-prone DNA polymerase [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|71151829|sp|Q73U92|DNAE2_MYCPA RecName: Full=Error-prone DNA polymerase
 gi|41398405|gb|AAS06026.1| DnaE2 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 1093

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 273/903 (30%), Positives = 460/903 (50%), Gaps = 47/903 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS++S L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    ++ +
Sbjct: 58  YAELHAHSAFSFLDGASTPEEMVEEAARLDLRALALTDHDGLYGAVRFAEAAAELDVRTV 117

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L      +L  + + + P P  P +++L    EGY+RL   ++  +L    K   R
Sbjct: 118 FGAEL------SLGPSARTEAPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEKGKPR 171

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
             L  L E       +LTG   G + +A        A + L      FG  R+ + L RH
Sbjct: 172 YDLDALTEAAGGHWHILTGCRKGHVRQALSDGGPDAAARALADLVDRFGAARVSIELTRH 231

Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPR 247
            +  D  R + +  LA    + +VAT  + F           + A+ A  ++ S      
Sbjct: 232 GQPLDDERNAALAALAPRFGVGVVATTGAHFAGPSRRRLAMAMGAIRARESLDSAAGWLA 291

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +L++ +EM  +F+  P+A+    E+  +C+F L + AP LP F   +       E
Sbjct: 292 PLGGSHLRSGAEMARLFAWRPQAVTAAAELGEQCAFGLALIAPRLPPFDVPD----GHTE 347

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
           ++ LR   + G   R      A   +AQ     ++ EL VIA+++F GYFL+V D  ++ 
Sbjct: 348 DSWLRQLTMTGARDRYGSPEHAPRAYAQ-----IEHELKVIAQLQFPGYFLVVHDIARFC 402

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           ++NNI +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D+D   D+R
Sbjct: 403 RENNI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDMDIESDQR 461

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP--NDPAH 485
           ++VI+YV ++YG +  AQ+    + + K A+RD+ RAL     Q D   K I   + PA 
Sbjct: 462 EKVIQYVYDRYGRDYAAQVANVITYRGKIAVRDMARALGYSQGQQDAWSKQISSWSGPAD 521

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              ++ I                 ++++++ ++  L RH   H+ G+VI DRP++ + P+
Sbjct: 522 SPDVEGIP---------------PQVIDLANQVRNLPRHLGIHSGGMVICDRPIADVCPV 566

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
                 +  V Q++       GL+KFD LGL  L+ L  ++D +A+ +G++VDL+ +   
Sbjct: 567 EWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDLARLDLS 626

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
           +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  Y 
Sbjct: 627 EPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHPYI 686

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKI 721
            R+NG + ++  HP ++P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG K+ 
Sbjct: 687 RRRNGVDPVLYDHPSMEPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSKRS 746

Query: 722 KEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            E M + + RF  G  + +G    +    +E L  FA++GF +SHA ++A + + ++W K
Sbjct: 747 TERMRRLRSRFYDGMRALHGAPDEVIDRTYEKLEAFANFGFPESHALSFASLVFYSSWFK 806

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIYYS 838
            H+P  F AA +  +       +    DAR+  + +  P VN       +      +   
Sbjct: 807 LHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHATLENAGTEVRLG 866

Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L A++ +G   A  ++ E  A+ PF SL D  +R+   +L+ +  E+L  AGA  CFG S
Sbjct: 867 LGAVRHIGDDLAEKLVQERKANGPFTSLLDLTARL---QLSVQQTEALATAGAFGCFGMS 923

Query: 898 RMQ 900
           R +
Sbjct: 924 RRE 926


>gi|118471589|ref|YP_886009.1| error-prone DNA polymerase [Mycobacterium smegmatis str. MC2 155]
 gi|118172876|gb|ABK73772.1| DNA polymerase III, alpha subunit, putative [Mycobacterium
           smegmatis str. MC2 155]
          Length = 1095

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 283/911 (31%), Positives = 464/911 (50%), Gaps = 57/911 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS+YS L+GA +   ++++ A     AIA+TD + L+  + F++ A    +  +
Sbjct: 62  YAELHAHSAYSFLDGASTPEELVEEAARLNLRAIALTDHDGLYGVVRFAEAARELDVATV 121

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L +    N+  T   + P P  P +++L    EGY+RL   +++ +L    K   R
Sbjct: 122 FGAELSLS---NVART---EDPDPPGPHLLVLARGPEGYRRLSREIAKAHLAGGEKGRPR 175

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                L E       +LTG   G + +A        A   L      FG DR+ + L  H
Sbjct: 176 YDFDQLTEAAGGHWHILTGCRKGHVRQALSDGGPDAAAAALADLVDRFGADRVSIELTHH 235

Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D  R + + +LA    L +VAT  + F +         + A+     +       +
Sbjct: 236 GHPCDDERNAALAELAPRFGLGVVATTAAHFATPSRGRLAMAMAAIRARNSIDTAAG-WL 294

Query: 249 TP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            P    +L++  EM  +F   PE +    ++  +C+F L + AP LP F   +       
Sbjct: 295 APLGGVHLRSGEEMARLFD--PEFVAAAADLGEQCAFGLALIAPQLPPFDVPD----GHT 348

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
           E++ LR+ A+AG   R      A   +AQ     ++ EL +I +++F GYFL+V D  Q+
Sbjct: 349 EDSWLRHLAMAGAARRYGPPERAPKAYAQ-----IEHELRIIEQLRFPGYFLVVHDITQF 403

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            + NNI +  GRGS A S   YAL +T++DP+   LLFERFL+P R   PD DID   D 
Sbjct: 404 CRDNNI-LCQGRGSAANSAVCYALGVTNVDPIANDLLFERFLSPARDGPPDIDIDIESDL 462

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+ VI+YV  +YG +  AQ+    + + ++A+RD+ RAL     Q D   K +       
Sbjct: 463 RENVIQYVYERYGRDYAAQVANVITYRGRSAIRDMARALGFSQGQQDAWSKHL------- 515

Query: 487 VSLQAIADDSRFREARLADPSV----DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                    SR+ + R   P V    ++++E++ ++  L RH   H+ G+VI DRP++ +
Sbjct: 516 ---------SRW-DGRPDSPDVAEIPEQVIELANQIANLPRHMGIHSGGMVICDRPIADV 565

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+ +G++VDL+ +
Sbjct: 566 CPVEWARMENRSVLQWDKDDCAAIGLVKFDMLGLGMLSALHYAIDLVAEHKGIEVDLATL 625

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V 
Sbjct: 626 DLSEPAVYEMLQRADSVGVFQVESRAQMATLPRLKPREFYDLVVEVALIRPGPIQGGSVH 685

Query: 661 -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG- 718
            Y  R+NG+E +   HP ++P LK+T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG 
Sbjct: 686 PYIKRRNGQEPVTYDHPSMEPALKKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGS 745

Query: 719 KKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
           K+   +M + + RF  G   ++GI+  +A  I+E L  FA++GF +SH+ ++A + + ++
Sbjct: 746 KRSTAKMRRLRSRFYDGMRERHGITGVVADRIYEKLEAFANFGFPESHSLSFASLVFYSS 805

Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--- 834
           W K H+P  F AA +  +       +    DAR+  + +  P VN       + +NR   
Sbjct: 806 WFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHAGL-ENRGLD 864

Query: 835 IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
           +   L +++ +G   A+ I+ E  A+  F SL D  SRV   +L     E+L  AGAL C
Sbjct: 865 VRLGLGSVRHIGDDLAQRIVDEREANGQFTSLLDLTSRV---QLTVPQTEALATAGALGC 921

Query: 894 FGYSRMQLLQS 904
           FG +R + L +
Sbjct: 922 FGITRREGLWA 932


>gi|313903425|ref|ZP_07836816.1| DNA polymerase III catalytic subunit, DnaE type [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466246|gb|EFR61769.1| DNA polymerase III catalytic subunit, DnaE type [Thermaerobacter
           subterraneus DSM 13965]
          Length = 1218

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 237/592 (40%), Positives = 352/592 (59%), Gaps = 30/592 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL VHS YSLL+GA  +  +  + A    PA+A+TD   ++ A++F +     GI+PI
Sbjct: 4   FVHLHVHSEYSLLDGAARVGELAARAAELGMPALALTDHGVMYGAIDFYKACKKHGIKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTP-FPTVPSIVLLVSTAE-GYQRLIELVSRMYL--LDQGK 126
           IGC+L +      + T   + P     P  +L ++  E GY+ LI +VSR Y        
Sbjct: 64  IGCELYL-----ARRTRHDREPKLDDQPYHLLALAQNETGYRNLIRIVSRAYAEGFYYKP 118

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
           ++ R  L+      +EGLI+ +G     I R       + A + +  + ++FGDR Y  +
Sbjct: 119 RADRELLAQY----SEGLIVTSGCIGSEIPRLLLEGREEEALQAVRWYLEVFGDRFYFEI 174

Query: 187 QRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           Q H   +  R  +++++LA   ++P+VATN+  +L+++D  AH+VL+ +     +   +R
Sbjct: 175 QDHGLPEERRAYARILELARRFDVPVVATNDVHYLNKDDAAAHEVLLCIQTGKTLDDPNR 234

Query: 246 PRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R   P+ YLK   EM ++F D+PEAL NTV++A RC    +    +LP +   E  D  
Sbjct: 235 MRFEGPEFYLKTPEEMAALFRDVPEALANTVKLAERCQLEFEFGRFLLPHYEVPEGHDAA 294

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               + LR    + L  R             + R RL+ EL VI RM +  YFLIV DF+
Sbjct: 295 ----SYLRYLCESKLPERYPNAG-------SEVRDRLNHELEVITRMGYPAYFLIVWDFV 343

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +A++N I VGPGRGS AGS+ AY L ITDIDPLR++LLFERFLNP+R++MPD DIDF  
Sbjct: 344 DYARRNGIAVGPGRGSAAGSLVAYVLGITDIDPLRYNLLFERFLNPERVTMPDIDIDFDD 403

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            RRDEVI YV  KYG +RVAQIITFG + A+A +RDVGR + +PY +VD++ K++P    
Sbjct: 404 HRRDEVIEYVVRKYGRDRVAQIITFGRMLARAVIRDVGRVMGLPYGEVDKIAKMVPAQLG 463

Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             ++L QA+      ++A    P V +L+++++KLEG+ RHAS HAAG+VIG  PL + V
Sbjct: 464 --ITLDQALESSPELKQAYDQQPVVRQLVDMARKLEGMPRHASVHAAGVVIGRDPLMEHV 521

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
           P+ R ++    VTQF M  +E+ GL+K DFLGL+TL ++Q++   + Q G +
Sbjct: 522 PLQR-MQDGSTVTQFPMTTLEELGLLKMDFLGLRTLHVIQETEQIIHQTGAR 572



 Score =  310 bits (794), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 171/463 (36%), Positives = 257/463 (55%), Gaps = 30/463 (6%)

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD  T+  ++   T  +FQ+ESSG  Q L  ++P  IED+IA V+L+RPGP+ + +V
Sbjct: 634  IPLDDAATFEAMSRGETAAMFQVESSGFTQMLRSLKPSSIEDLIAAVALFRPGPLGSGMV 693

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+  +   HP ++P+LKET G I+YQEQVMQIA +++G++L EAD+LRRAMG
Sbjct: 694  DDFIKRKHGQVPVEYPHPWLEPILKETYGTIVYQEQVMQIASVMAGFTLGEADLLRRAMG 753

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM KQ+E+F++GA+  GI   +A  IF+L+  FA YGFNKSH+AAY  ++Y TA+
Sbjct: 754  KKKPEEMQKQREKFLAGAAAKGIDAELAGRIFDLMEYFAGYGFNKSHSAAYGYLAYVTAY 813

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------G 831
            +KTHYP  ++AA+++  M N +++ ++  + R+  I ++PP VN     F V       G
Sbjct: 814  LKTHYPAPYMAATLSSVMSNSDRVAEYIAECRRLGIPVLPPDVNQSEARFTVVPDPGAPG 873

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I + LAA+K VG      I+ A  +  PF SL+DFC RVD +++NRR LESL+ AGA
Sbjct: 874  GQAIRFGLAAVKNVGFGAIESIVAARQEGGPFRSLDDFCRRVDLRQVNRRALESLIKAGA 933

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------------------AHEKG 932
             D  G  R +L+  L+ +   AQ   K R     ++                        
Sbjct: 934  FDSLGEPRARLVAGLEEVMNRAQRWHKERETGQVSLLDLTAALVGAGGRGSGGGGTGAGA 993

Query: 933  TFSDKITLEKFSVEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
              +D    E   V+    + +   E+ VLG Y SGHPL  Y+  L +       +     
Sbjct: 994  AAADLEVTELPPVDEWPPNRKLAMEKEVLGLYLSGHPLAHYQRELARRVTATTRQLADRE 1053

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G  +++  +V   ++  TR G  + +V   +     E   FP
Sbjct: 1054 DGARVQVGGLVQGVRRITTRGGDFMAFVQLEDLEGTVEVVVFP 1096


>gi|299137470|ref|ZP_07030652.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX8]
 gi|298600875|gb|EFI57031.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX8]
          Length = 1072

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 305/1037 (29%), Positives = 509/1037 (49%), Gaps = 75/1037 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V L V S++S LEGA     ++ + A  + PA+AI D N ++ A  F       G++  
Sbjct: 5    YVELHVASAFSFLEGASQPEELMKRAAELEMPAMAILDRNGVYGAARFHTSGNRNGVRAH 64

Query: 71   IGCQLDIDMQDNLKMT-----NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            IG ++ +       M      NQ     P +P   LL  +  GYQ L +L+++  + ++ 
Sbjct: 65   IGAEIAVSSFGTRWMPPAWLPNQFVAEPPRLP---LLCESQAGYQNLCQLITQFKMREKS 121

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184
            K         L +    GL+ LTGG  GP+  A      +   K +    +++G + +YV
Sbjct: 122  KLEGSATWEDLHQYAA-GLVCLTGGEEGPLAAALAEGGEEAGRKAVERLVRIYGPNNVYV 180

Query: 185  NLQRHRGYDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
             +QRH  Y+R   +R    +++A +  LP++ATN   +    + E  D+  AV H T + 
Sbjct: 181  EVQRH--YEREEEWRNQAAIRIACSLRLPVLATNGVRYAKAYEREVLDLFTAVRHHTELD 238

Query: 242  QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            Q  R   +    +L+  SEM  +F D+P A EN++E++ R  F L       P++   E 
Sbjct: 239  QAGRLLALNSQRHLRRASEMARLFHDVPNATENSIELSARLKFELDDLGYAFPKYPVPED 298

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +    ++ LR +   G+  R   G        +  +++++ EL++IAR+ F+GYFLIV
Sbjct: 299  ESM----DSFLRKRVAEGIVRRY--GPKNDRALLERAKKQVEHELDLIARLGFAGYFLIV 352

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +Q+ K  +I +  GRGS A S   YAL IT IDP+   LLFERFL+ +R   PD D+
Sbjct: 353  WDIVQFCKGRDILI-QGRGSAANSAVCYALEITVIDPVGMELLFERFLSENRGEWPDIDL 411

Query: 421  DF-CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            D   + +R++ I+YV  +YG    A      + + K++ R+VG+AL      + RL  L+
Sbjct: 412  DLPSEGQREQAIQYVYQRYGELGAAMTANVITYRGKSSAREVGKALGFDQESLGRLSSLV 471

Query: 480  P-------NDP-AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                    ND  AH  S Q    D       +  P + + LE+  +++ L RH   H+ G
Sbjct: 472  SQWEWRGKNDTIAH--SFQHAGFD-------IKHPRIAKYLELCMRIQDLPRHLGQHSGG 522

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI    L+ +VP+ R       V Q++ +     G+IK D LGL  + +L   L  + Q
Sbjct: 523  MVICQGQLNSVVPLERASMPGRTVVQWDKEDCADLGIIKVDLLGLGMMAVLHDCLKLIPQ 582

Query: 592  R-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              G  VDL+ +P +D E Y +L    T+G+FQ+ES     +L    P    D++  V++ 
Sbjct: 583  HYGEAVDLAQLP-EDEEVYRVLQQADTVGMFQIESRAQMASLPRNYPTRFYDLVVQVAII 641

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGPI   ++  Y  R+  +E +   HP ++P+LK T GV ++QEQ+++IA  ++ ++ +
Sbjct: 642  RPGPIVGKMMHPYMRRRQKREPVTYPHPSLEPVLKRTLGVPLFQEQLLRIAMTVANFTGA 701

Query: 709  EADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EA+ LRRA+G ++  E M   +    +G + NGI       I E ++ FA YGF +SHAA
Sbjct: 702  EAEELRRAVGMRRSWERMKNLEVNLRAGMAANGIDLKTQDTIVENISSFALYGFPESHAA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV---NTP 824
            ++A+I+Y +A++K  Y   F  A +  +           +DA++  ++I+P  V   + P
Sbjct: 762  SFAMIAYASAYLKVRYLAAFTCAILNNQPMGFYAPAVLVKDAQRHGLRILPIDVQISDWP 821

Query: 825  CV--DFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRV 881
            C   + + G   +   L   KG+   +A  ++++   D PF S ED   RV    LNR+ 
Sbjct: 822  CTIEEERDGSLSLRMGLGYAKGLSKQSAEMLVKSRDQDGPFRSAEDLALRV--PILNRKG 879

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQ--KYAQWVEKNRTNKHENIFAHEKGTF----S 935
            L  L   GAL+            +D I+  + A W + +R  K E     +   +    S
Sbjct: 880  LMLLARIGALN-----------KIDAIEHRRDALW-QVDRAGKLEGPLLRQNNEWLQEDS 927

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
              + L++ + E    R  ++    G     HP+   +  L+   I   +E      G  +
Sbjct: 928  RTLPLQQMTTEE---RLVSDYAGTGLTVGRHPMYYRRAALQSQRILSAQELKVYKDGEFV 984

Query: 996  RLAAMVVSKQQKKTRKG 1012
            R A  V+++Q+  T KG
Sbjct: 985  RTAGCVIARQRPGTAKG 1001


>gi|327473794|gb|EGF19212.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK408]
          Length = 1069

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 260/770 (33%), Positives = 402/770 (52%), Gaps = 49/770 (6%)

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
             PE+L N  ++ R   + +      LPRF      + ++    ELR ++ AGL+ R   G
Sbjct: 238  FPESLANLEKLVRHVHYDINRELK-LPRF------NRERPAVEELRERSEAGLKKRGLTG 290

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
             +        Y++RLD EL VI +M F  YFLIV D +++ +     +G GRGS  GS+ 
Sbjct: 291  KL--------YQERLDQELAVIHQMGFDDYFLIVWDLLRFGRSQGYYMGMGRGSAVGSLV 342

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E IRYV+++YG    AQI
Sbjct: 343  AYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPEFIRYVRDRYGSMHAAQI 402

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
            +T+ +  AK A+RDV +   +P  ++  + K I    +      A   +  FR+   +  
Sbjct: 403  VTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT---SAYEKNMGFRQIINSKL 459

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
               R  +I++K+EG  R  S HAAG+V+ D  L+  +P+      D+ +TQ++   +E  
Sbjct: 460  EYQRAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL--KYGEDMYITQYDAHGVESN 517

Query: 567  GLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D +T  L     T GIFQ E 
Sbjct: 518  GLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIADIDLEDLDTLKLFAAGQTKGIFQFEQ 577

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
             G    L+ +QP C E+++A  SL RPG  D I  +  RK+G E++  I   +  +L  T
Sbjct: 578  PGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGLEQVELIDDSLADILAPT 637

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + +E F++GA K G S++ 
Sbjct: 638  YGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMHRMQEDFVAGALKLGHSESK 697

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F    +     +      +
Sbjct: 698  AKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDVFFDVMLNYSSSD------Y 751

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
              DA  F+ +    S+N      K  D +I+  L  IKG+    A  I+E   +  F  +
Sbjct: 752  ITDALSFDFETAHLSINNIPYHDKFQDKKIFLGLKNIKGLPRDLAYWIIEERQNAAFTGV 811

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
            EDF  R+        +L  L+  G  D F  +R ++L +L N+                 
Sbjct: 812  EDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNL----------------F 855

Query: 926  IFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +FA E G+     T      ++ S   +FE EQ ++G   S HPL      L K   + +
Sbjct: 856  VFADELGSLFADTTYSWTEAQDFSDAEKFELEQSIIGVGLSNHPL----VKLAKEADQPF 911

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                     +  R+ A V + +  +T+KG  + ++  S+  K+ +   FP
Sbjct: 912  SWISELTENSRARILAEVQTIKTIRTKKGENMAFLQVSDTKKKLDVTLFP 961


>gi|254776764|ref|ZP_05218280.1| error-prone DNA polymerase [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 1093

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 277/905 (30%), Positives = 458/905 (50%), Gaps = 51/905 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS++S L+G  +   ++++ A     A+A+TD + L+ A+ F++ A    ++ +
Sbjct: 58  YAELHAHSAFSFLDGVSTPEEMVEEAARLDLRALALTDHDGLYGAVRFAEAAAELDVRTV 117

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L      +L  + + + P P  P +++L   AEGY+RL   ++  +L    K   R
Sbjct: 118 FGAEL------SLGPSARTEAPDPPGPHLLVLARGAEGYRRLSRQLAVAHLAGGEKGKPR 171

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
             L  L E       +LTG   G + +A        A + L      FG  R+ + L RH
Sbjct: 172 YDLDALTEAAGGHWHILTGCRKGHVRQALSDGGPDAAARALADLVDRFGAARVSIELTRH 231

Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPR 247
            +  D  R + +  LA    + +VAT  + F           + A+ A  ++ S      
Sbjct: 232 GQPLDDERNAALAALAPRFGVGVVATTGAHFAGPSRRRLAMAVGAIRARESLDSAAGWLA 291

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +L++  EM  +F+  PEA+    E+  +C+F L + AP LP F   +       E
Sbjct: 292 PLGGSHLRSGEEMARLFAWCPEAVTAAAELGEQCAFGLALIAPRLPPFDVPD----GHTE 347

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
           ++ LR   + G   R      A   +AQ     ++ EL VIA+++F GYFL+V D  ++ 
Sbjct: 348 DSWLRQLTMTGARDRYGSPERAPRAYAQ-----IEHELKVIAQLQFPGYFLVVHDIARFC 402

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           ++NNI +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D+D   D+R
Sbjct: 403 RENNI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDMDIESDQR 461

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           ++VI+YV ++YG +  AQ+    + + K A+RD+ RAL     Q D   K I        
Sbjct: 462 EKVIQYVYDRYGRDYAAQVANVITYRGKIAVRDMARALGYSQGQQDAWSKQI-------S 514

Query: 488 SLQAIADDSRFREARLADPSVD----RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           S   +AD           P V+    ++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 515 SWSGLAD----------SPDVEGIPPQVIDLANQVRNLPRHLGIHSGGMVICDRPIADVC 564

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
           P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+ +G++VDLS + 
Sbjct: 565 PVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDLSRLD 624

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  
Sbjct: 625 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 684

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-K 719
           Y  R+NG + ++  HP ++P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG K
Sbjct: 685 YIRRRNGVDPVLYDHPSMEPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 744

Query: 720 KIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           +  E M + + RF  G  + +G    +    +E L  FA++GF +SHA ++A + + ++W
Sbjct: 745 RSTERMRRLRGRFYDGMRALHGAPDEVIDRTYEKLEAFANFGFPESHALSFASLVFYSSW 804

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIY 836
            K H+P  F AA +  +       +    DAR+  + +  P VN       +      + 
Sbjct: 805 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHATLENAGTEVR 864

Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             L A++ +G   A  ++ E  A+ PF SL D  +R+    L+    E+L  AGA  CFG
Sbjct: 865 LGLGAVRHIGDDLAEKLVQERKANGPFASLLDLTARL---HLSVPQTEALATAGAFGCFG 921

Query: 896 YSRMQ 900
            SR +
Sbjct: 922 MSRRE 926


>gi|327489345|gb|EGF21138.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK1058]
          Length = 1069

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 263/789 (33%), Positives = 410/789 (51%), Gaps = 51/789 (6%)

Query: 250  PDH-YLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P+H +L     +   F +  PE+L N  ++ R   + +      LPRF      + ++  
Sbjct: 219  PNHEFLLAPDALAGAFKETFPESLANLEKLVRHVHYDINRELK-LPRF------NRERPA 271

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              ELR ++ AGL+ R   G +        Y++RLD EL VI +M F  YFLIV D +++ 
Sbjct: 272  VEELRERSEAGLKKRGLTGKL--------YQERLDQELAVIHQMGFDDYFLIVWDLLRFG 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R
Sbjct: 324  RSQGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYR 383

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +   
Sbjct: 384  PEFIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDS--- 440

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+  
Sbjct: 441  LTSAYEKNMGFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL-- 498

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D 
Sbjct: 499  KYGEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIAEIDLEDA 558

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ET  L     T GIFQ E  G    L+ +QP   E+++A  SL RPG  D I  +  RK+
Sbjct: 559  ETLKLFAAGQTKGIFQFEQPGAISLLKRVQPVYFEEVVATTSLNRPGASDYIDNFVKRKH 618

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM 
Sbjct: 619  GLEQVELIDDSLTDILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMH 678

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 679  RMQEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDV 738

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F    +     +      +  DA  F+ +  P S+N      K  D +I+  L  IKG+ 
Sbjct: 739  FFDVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLP 792

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L 
Sbjct: 793  RDLAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLP 852

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFS 964
            N+                 +FA E G+     T      ++ S   +FE EQ ++G   S
Sbjct: 853  NL----------------FVFADELGSLFADTTYSWTEAQDFSDAEKFELEQSIIGVGLS 896

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HPL      L K   + +         +  ++ A V + +  +T+KG  + ++  S+  
Sbjct: 897  DHPL----VKLAKEADQPFSWISELTENSRAKILAQVQTIKTIRTKKGENMAFLQVSDTK 952

Query: 1025 KEYEANFFP 1033
            K+ +   FP
Sbjct: 953  KKLDVTLFP 961


>gi|324990960|gb|EGC22895.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK353]
          Length = 1042

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 259/770 (33%), Positives = 401/770 (52%), Gaps = 49/770 (6%)

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
             PE+L N  ++ R   + +      LPRF      + ++    EL  ++ AGL+ R   G
Sbjct: 211  FPESLANLEKLVRDVHYDINRELK-LPRF------NRERPAVEELLERSEAGLKKRGLTG 263

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
             +        Y++RLD EL VI +M F  YFLIV D +++ +     +G GRGS  GS+ 
Sbjct: 264  KL--------YQERLDQELAVIHQMGFDDYFLIVWDLLRFGRSQGYYMGMGRGSAVGSLV 315

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E IRYV+++YG    AQI
Sbjct: 316  AYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPEFIRYVRDRYGSMHAAQI 375

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
            +T+ +  AK A+RDV +   +P  ++  + K I    +      A   +  FR+   +  
Sbjct: 376  VTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT---SAYEKNMAFRQIINSKL 432

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
               +  +I++K+EG  R  S HAAG+V+ D  L+  +P+      D+ +TQ++   +E  
Sbjct: 433  EYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL--KYGEDMYITQYDAHGVESN 490

Query: 567  GLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D  T  L     T GIFQ E 
Sbjct: 491  GLLKMDFLGLRNLTFVQRMKEATLEKYKVDIEIAEIDLEDANTLKLFAAGQTKGIFQFEQ 550

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
             G    L+ +QP C E+++A  SL RPG  D I  +  RK+G E++  I   +  +L  T
Sbjct: 551  PGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGLEQVELIDDSLADILAPT 610

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + +E F++GA K G S++ 
Sbjct: 611  YGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMHRMQEDFVAGALKLGHSESK 670

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F    +     +      +
Sbjct: 671  AKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDVFFDVMLNYSSSD------Y 724

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
              DA  F+ +  P S+N      K  D +I+  +  IKG+    A  I+E   +  F  +
Sbjct: 725  ITDALSFDFETAPLSINNIPYHDKFQDKKIFLGMKNIKGLPRDLAYWIIEERQNAAFTGV 784

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
            EDF  R+        +L  L+  G  D F  +R ++L +L N+                 
Sbjct: 785  EDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNL----------------F 828

Query: 926  IFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +FA E G+     T      ++ S   +FE EQ ++G   S HPL      L K   + +
Sbjct: 829  VFADELGSLFADTTYSWTEAQDFSDAEKFELEQSIIGVGLSDHPL----VKLAKEADQPF 884

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                     +  R+ A V S +  +T+KG  + ++  S+  K+ +   FP
Sbjct: 885  SWISELTENSRARILAEVQSIKTIRTKKGENMAFLQVSDTKKKLDVTLFP 934



 Score = 39.3 bits (90), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 16/66 (24%), Positives = 35/66 (53%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 9  IQLDTKTVYSFMDSLIPIKKYVQKAKDLGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 68

Query: 72 GCQLDI 77
          G +L +
Sbjct: 69 GLELSL 74


>gi|296168813|ref|ZP_06850495.1| DNA-directed DNA polymerase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295896516|gb|EFG76163.1| DNA-directed DNA polymerase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 1080

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 275/911 (30%), Positives = 463/911 (50%), Gaps = 56/911 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS++S L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    ++ +
Sbjct: 46  YAELHAHSAFSFLDGASTPEELVEEAARLGLRALALTDHDGLYGAVRFAEAAAELELRTV 105

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L      +L    + +TP P  P +++L    EGY+RL   ++  +L    K   R
Sbjct: 106 FGAEL------SLGPGARTETPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEKGKPR 159

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                L E       +LTG   G + +A        A + L      FG DR+ + L  H
Sbjct: 160 YDFDALTEAAGGHWHILTGCRKGHVRQALS-QGPDAAGRALADLVDRFGADRVSIELTHH 218

Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPR 247
            +  D  R + +  LA    + +VAT  + F           + A+ A  ++ +      
Sbjct: 219 GQPPDDERNAALAGLAPRFGVGVVATTGAHFAGPSRRRLAMAMGAIRARQSLDAAAGWLA 278

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK-- 305
                +L++  EM  +F+  P+A+    ++  +C+F L + AP LP F      D+    
Sbjct: 279 PLGGSHLRSGEEMARLFAWRPDAVTAAADLGEQCAFGLALIAPRLPPF------DVPAGH 332

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            E++ LR   + G   R      A    +Q     ++ EL VIAR++F GYFL+V D  +
Sbjct: 333 TEDSWLRQLTMTGARGRYGTPDAAPRAFSQ-----IEHELKVIARLQFPGYFLVVHDIAR 387

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           + ++NNI +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D+D   D
Sbjct: 388 FCRENNI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDMDIESD 446

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           +R++VI+YV +KYG +  AQ+    + + + A+RD+ RAL     Q D   K + +    
Sbjct: 447 QREKVIQYVYDKYGRDYAAQVANVITYRGRIAVRDMARALGFSQGQQDAWSKQLGH---- 502

Query: 486 PVSLQAIADDSRFREARLADPSVD----RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +AD           P V+    ++++++ ++  L RH   H+ G+VI DRP++ 
Sbjct: 503 ---WNGLAD----------SPDVEGIPPQVVDLANQIRNLPRHMGIHSGGMVICDRPIAD 549

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
           + P+     ++  V Q++       GL+KFD LGL  L+ L  ++D +A+ +G++VDL+ 
Sbjct: 550 VCPVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDLAR 609

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
           +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V
Sbjct: 610 LDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRIFYDLVVEVALIRPGPIQGGSV 669

Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             Y  R+NG + +V  HP ++P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG
Sbjct: 670 HPYIRRRNGLDPVVYDHPSMEPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMG 729

Query: 719 -KKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            K+  E M + ++RF  G  + +G +  +    +E L  FA++GF +SHA ++A + + +
Sbjct: 730 SKRSTERMRRLRDRFYDGMRALHGATDEVIDRAYEKLEAFANFGFPESHALSFASLVFYS 789

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNR 834
           +W K H+P  F AA +  +       +    DAR+  + +  P VN       +      
Sbjct: 790 SWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHATLENAGTE 849

Query: 835 IYYSLAAIKGVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
           +   L A++ +G   A R + E  A+ PF SL D  +R+   +L+    E+L  AGA  C
Sbjct: 850 VRLGLGAVRHIGDDLAERLVAERKANGPFASLLDLTTRL---QLSVPQTEALATAGAFGC 906

Query: 894 FGYSRMQLLQS 904
           FG SR + L +
Sbjct: 907 FGMSRREGLWA 917


>gi|116491030|ref|YP_810574.1| DNA polymerase III, alpha subunit [Oenococcus oeni PSU-1]
 gi|290890511|ref|ZP_06553586.1| hypothetical protein AWRIB429_0976 [Oenococcus oeni AWRIB429]
 gi|116091755|gb|ABJ56909.1| DNA polymerase III, alpha subunit [Oenococcus oeni PSU-1]
 gi|290479907|gb|EFD88556.1| hypothetical protein AWRIB429_0976 [Oenococcus oeni AWRIB429]
          Length = 960

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 305/1035 (29%), Positives = 483/1035 (46%), Gaps = 130/1035 (12%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  LQV S Y LL    S   ++  +      A  + + + L+ A +F Q A +  I+P
Sbjct: 2    SYTPLQVFSEYDLLRNPDSTIELVKALKKRGFQAAVLANHDYLYGAEKFRQAAISVNIRP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG          +  T+ G+        ++ +     GYQ L+++ + +      K S 
Sbjct: 62   IIGL--------TISDTDHGE--------VIFVSKNYSGYQNLMKISTYLAF---NKNSQ 102

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-----KKLFGDRLYV 184
             I      +     LI   G  +         NSS    K L  F     KK   D +  
Sbjct: 103  FILKENNLDFSNLALIFQDGKETK------IKNSSSFTRKELGYFPIDWVKK--NDSVTA 154

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +  +H         +  +L +T +  +V      +L +E++ A ++              
Sbjct: 155  SALQH--------IEKNELNFTGKSEIVGK----YLKDENFYASNL-------------- 188

Query: 245  RPRVTPDHYLKNRSEMVS-IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                 PD  LKN    ++ I  D P++               + H PI P        D 
Sbjct: 189  -----PDEILKNNQHFIADIVDDWPKS---------------EKHLPIFP------LPDS 222

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +   +  L      GLE R     I + Y     ++R+D EL  I ++  + YFL+V D 
Sbjct: 223  ENNPKKYLSKLVKLGLENRFKNKDIPEAY-----QKRIDRELRTIFQLDLADYFLVVWDI 277

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I +A+  NI +G GRGS  GS+ AYAL IT IDP+++ L FERFLNP R+ +PD DID  
Sbjct: 278  INFARHENIQLGAGRGSAVGSLVAYALYITTIDPIKYDLYFERFLNPKRIQLPDIDIDVP 337

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP--N 481
             +RR E++ Y+Q KY  +  +QI TF + + + A+RD  R        + R  + +   N
Sbjct: 338  GNRRQEIVEYLQKKYSLDNFSQIGTFDTFKRRLAVRDSARIFASSEGTLKRFSRFMAQNN 397

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            D          AD +   E     P+   ++ ++Q + GL RH   HAAGIV+    L  
Sbjct: 398  DALED------ADPNNLPETIAELPNSSEIISLAQSISGLPRHVGIHAAGIVLSPEKLVN 451

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSL 600
             VP+ +   SD+ VTQF+   +E  GL+KFD L L  L ++      + Q  G K +L  
Sbjct: 452  YVPLNQ--VSDITVTQFDKDDVEAIGLVKFDLLRLTNLDMIADIRSLIQQHYGKKFNLDS 509

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            I  +D +         T GIFQ ES   + AL+ +     +DI+A+ +L RPGP +NI +
Sbjct: 510  IDLNDKKVLDSFKNLQTNGIFQFESESAKSALKQIAVSSFDDIVAVNALNRPGPSENIPI 569

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y   K     I  I   +  +L  T GVIIYQEQVMQIAQ+ +G++L EADV R A+G K
Sbjct: 570  YAQGKKDPNHIEIIDKSLQKILLPTYGVIIYQEQVMQIAQVYAGFTLGEADVFRAAIGHK 629

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             +E++  Q + FI GA + G  +  A  IF  + +FA+YGFNKSHA AY+ ++++ A++K
Sbjct: 630  NEEKLFAQHDAFIKGAVEKGHQQEQAEEIFAYIERFANYGFNKSHAVAYSKLAFEMAYLK 689

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             ++P+EF +  +  +  N      + QD +   I+++ P +N     F      IY  L 
Sbjct: 690  IYFPLEFFSVLLNYDTKN-----SYLQDIKNKGIKLLGPDINHAERGFISDKGVIYVGLG 744

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IKG+       I+ E ++   F  L DF  R+    +    +  L +AG+LD FGY+R 
Sbjct: 745  KIKGLNRKVIDEIVKERNSHGLFSGLTDFLQRMAGSDIGESDIVQLTYAGSLDHFGYNRQ 804

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENEQRV 958
            +L                 +TN    I A E  G+   +  +      +   R  +E+ V
Sbjct: 805  EL-----------------KTNAASLITAMEFGGSLLSETKISAIGEMSLLDRLAHEKEV 847

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGW 1017
            LGF  SGHP+D  +  + K   KGY + +  ++ + I ++A M+ S +  + + G+++ +
Sbjct: 848  LGFTISGHPIDSLRKEIVK---KGYTQ-INDLKADQIVKMAVMIDSIRTTRDKNGNQMAF 903

Query: 1018 VTFSEPAKEYEANFF 1032
            V+ S+ + E     F
Sbjct: 904  VSISDGSGESSLTVF 918


>gi|229916404|ref|YP_002885050.1| DNA polymerase III, subunit alpha [Exiguobacterium sp. AT1b]
 gi|229467833|gb|ACQ69605.1| DNA polymerase III, alpha subunit [Exiguobacterium sp. AT1b]
          Length = 1055

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 319/1035 (30%), Positives = 506/1035 (48%), Gaps = 117/1035 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
             +HL V ++YSLL+  + L   + ++      ++AI D +  +    F        ++P+
Sbjct: 1    MIHLNVRTAYSLLQSTIRLEQYVLQMTERGSRSVAIAD-DAFYGVPTFLSYCQRYEVKPL 59

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  + + D L ++             V++ S+ E      EL  +  ++  G    R
Sbjct: 60   IGLRTVLRL-DGLDVS-------------VIVYSSNE-----TELKEQYRIIQAGGIEGR 100

Query: 131  ICLSWLQEIGTEGLIML--TGGSSGPIDRAFFFNS--SQVAEKRLLTFKKLFGDRLYVNL 186
              +          L++L     +S P+ R   ++   S V E++L  +  L   +    +
Sbjct: 101  TTMP---------LVVLPENWKASDPVHRRRLYHQLLSFVDEEKL--WLGLPAPQTTEQV 149

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            Q  +     RE   VQL        +    + ++  ED E    + A+    V+S +D  
Sbjct: 150  QVLKQLRLMREELAVQL--------IPAPETRYMRPEDVEGFRAISAIREGEVMSNEDVR 201

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +     +++  SEM   F+      E   E+ R  + I   H P     I +  D  QK 
Sbjct: 202  Q--KGLHVRLPSEMNDWFTT-----EELTELDRFEALIRLEHLPRAEGAIPELPDADQK- 253

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                   K + G   RL    + K    + Y +R  FEL VIA+  FS YFLIV D +++
Sbjct: 254  ------LKRLVG--ERLKSMELLK----EPYIERAKFELEVIAKTGFSSYFLIVEDIVRF 301

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+++ I VGPGRGS AGS+ ++AL IT++DP+R+ LLFERFLNP+R+SMPD D+DF  +R
Sbjct: 302  ARESGIEVGPGRGSAAGSLVSFALHITEVDPVRYGLLFERFLNPERVSMPDIDLDFEDER 361

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP--- 483
            R+EV+ YV +KYGH   AQI T  +  AKAA+RDV RAL M   +     K +       
Sbjct: 362  REEVVSYVLSKYGHTHAAQIGTLATFGAKAAMRDVARALGMTLEEGQAASKQVKAGGLDE 421

Query: 484  --AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
              + P  ++  A   + ++          LL I+++LEGL R +S HAAG+V+  +P+ +
Sbjct: 422  LMSSPKQMKWFAGSQKRQQ----------LLRIAKQLEGLPRQSSVHAAGVVLSRQPIEE 471

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            + P+  ++     VTQ+NMK +E+ GL+K D LGL+ L+ L+K  D + +      L  I
Sbjct: 472  VTPLQPELEEH--VTQYNMKDLEEVGLLKIDLLGLRNLSRLRKMEDLIRESDALFSLKTI 529

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P +D  TY LL    T GIFQ ES+GM+QAL  ++P   EDI+  +SLYRPGP+  I  Y
Sbjct: 530  PLNDARTYRLLARGETDGIFQFESTGMKQALRQVKPTEFEDIVVTMSLYRPGPMQFIETY 589

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK+G      +HP ++ ++K T GV++YQEQVM++ + L GYS +EAD++RRA+ KK 
Sbjct: 590  AKRKHGM-PYQPVHPDVEDVMKPTYGVLVYQEQVMRLLRKLGGYSYAEADLVRRAIAKKD 648

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               + +++ERF+  A K G    +A  IF  + KFA YGFN+SHA AY++ISY+ A++K 
Sbjct: 649  TGTIARERERFLQQA-KAGDQDVLA-QIFSWIEKFAGYGFNRSHAVAYSLISYRLAYVKA 706

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            H+P  F   +        +K  +  +  R+  I + PP V     D  +    +   L A
Sbjct: 707  HFPRVFHVVTS-------DKTTELVRLLRKDQIPVYPPDVLHGHADATLEGPGVRLGLKA 759

Query: 842  IKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            ++G+       ++E +   K   +L++     +  +L    L  L+ AGALD   +    
Sbjct: 760  VQGLTKRDVDRLIELNGQLKDVRTLQETMEWKNKDQLK---LRRLLGAGALDRMYHG--- 813

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
                 D  + + + VE+ R     +    E  +    +  +K    N S   E E+  LG
Sbjct: 814  -----DRTRAF-EAVERLREEAGTHFLPDELSSLG--LKQKKVKEPNWS---EEEREALG 862

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             +    PL     I       G E S     + G N  L   V   +   T+K  R+G +
Sbjct: 863  TWVVHSPLTALPDI-------GIEPSTIEEVMNGTNGYLVVYVDDVRTFMTKKQERMGVL 915

Query: 1019 TFSEPAKEYEANFFP 1033
               +   + E   FP
Sbjct: 916  MVDDGMTQDEVVVFP 930


>gi|312864545|ref|ZP_07724776.1| DNA polymerase III, alpha subunit [Streptococcus downei F0415]
 gi|311099672|gb|EFQ57885.1| DNA polymerase III, alpha subunit [Streptococcus downei F0415]
          Length = 1035

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 277/829 (33%), Positives = 438/829 (52%), Gaps = 56/829 (6%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD-LP 268
            P++  +   +  E D +   VL A+  +  +  +D   V    YL++  EM   F +  P
Sbjct: 150  PILPLHTVRYYEEADRQTLQVLHAIRDNLPL--RDVQPVPAGQYLRSCQEMQEAFEERFP 207

Query: 269  EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
            EAL+N   +    S+    H   LPRF      +  KE   ELR  A AGL+        
Sbjct: 208  EALKNLEALLAPISYHFD-HQLKLPRF------NRDKEAVLELRELAEAGLK-------- 252

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
             K   A  Y++RLD EL  I +M F  YFLIV D +++ +  +  +G GRGS AGS+ AY
Sbjct: 253  EKCLLASTYQERLDKELATIHQMGFDDYFLIVWDLLRFGRSRHYYMGMGRGSAAGSLVAY 312

Query: 389  ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
             L IT IDP++ +LLFERFLN +R SMPD DID     R E + YV+++YG    AQI+T
Sbjct: 313  TLDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYRSEFLHYVRDRYGSRHSAQIVT 372

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIP--NDPAHPVSLQAIADDSRFREARLADP 506
            + +  AK A+RDV +       ++  + + I   +D A      A   +  FR+   +  
Sbjct: 373  YSTFGAKQAIRDVFKRFGAAEYELTNITRKIGFRDDLA-----SAYEKNLSFRQMINSKE 427

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
               +   I+QK+EG  R  S HAAGIV+ D  L+  +P+      D+ +TQ++   +E  
Sbjct: 428  EYRKAFAIAQKIEGQPRQTSIHAAGIVMSDDDLTNHIPL--KSGEDMMITQYDAGAVEAN 485

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K DFLGL+ LT +Q+  + LA+ +G+++D+  I  +D  T  L     T GIFQ E 
Sbjct: 486  GLLKMDFLGLRNLTFVQRMAEKLAEEKGIQLDIRSIDLEDPGTLALFAAGRTKGIFQFEQ 545

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
            +G    L+ ++P   E+I+A  SL RPG  D    +  RK G+E I  I PL+ P+L+ T
Sbjct: 546  AGAINLLKRIKPAKFEEIVATTSLNRPGASDYTENFIRRKYGQEAIDLIDPLVAPILEGT 605

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK + EM K +  F+ GA   G + T 
Sbjct: 606  YGIMLYQEQVMQIAQVFAGFTLGKADLLRRAMSKKNQAEMQKMEADFMQGAKALGRNLTT 665

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A  +FE +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F    +     +      +
Sbjct: 666  AKELFERMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPSIFYDVMLNYSSPD------Y 719

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
              DA Q + ++   S+NT     K+ D  IY  +  +KG+    A  I+E    +PF S+
Sbjct: 720  ISDALQADFKVGSLSINTVPYTDKISDGIIYMGMKNLKGLPRDLAYWIIET---RPFSSI 776

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
            EDF +R+         +  L+  G  D F  +R ++ ++L+++  +         N+  +
Sbjct: 777  EDFLTRLPENYQKSDYIRPLIQIGLFDQFEPNRRKVEENLESLFTF--------VNELGS 828

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            +FA     +   + +E +S    S +++ E + LG   S HPL V     R+     ++E
Sbjct: 829  LFADSSYNW---LEVEDYS---PSQKYDLEMQWLGVGISPHPL-VGLAKEREGTFIPFDE 881

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANFFP 1033
             V       +R+   + + +  +T+ KG ++ +V+ ++  ++ +   FP
Sbjct: 882  LVTN---EQVRVLGQIEAVRVIRTKSKGQQMAFVSLTDTKQKLDVTVFP 927



 Score = 41.6 bits (96), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 37/71 (52%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F  +   + YS ++  ++L + + +        + I D +NL+ A  F+ +A  AG+Q I
Sbjct: 2  FAPIDTKTVYSFMDSLVNLKSYVKRAKELGYSHLGIMDQDNLYGAYHFAVQAKEAGLQAI 61

Query: 71 IGCQLDIDMQD 81
          +G +LD  + D
Sbjct: 62 VGLELDFRLAD 72


>gi|258592047|emb|CBE68352.1| Error-prone DNA polymerase [NC10 bacterium 'Dutch sediment']
          Length = 1062

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 315/1041 (30%), Positives = 500/1041 (48%), Gaps = 97/1041 (9%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            L  S S+  L   S +S LEGA   + ++++       A+A+TD + ++  +    KA  
Sbjct: 13   LMASHSYTPLWCKSHFSFLEGASHPDELVEEAHRLGLKALALTDRDGVYGIVRAHVKARE 72

Query: 65   AGIQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             G+  I+G Q+ + D+   ++ T  G +       +VLL    +GY  L  L++   L  
Sbjct: 73   LGLHLIVGAQVALADLP--VRRTQTGHS------ILVLLAQDRDGYSNLCRLITTGRLRS 124

Query: 124  -QGKQSVRICLSW---LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +G+ SV    +W    Q  G  GLI L GG      R    +  +VA +     + +FG
Sbjct: 125  PKGESSV----TWNEVCQHAG--GLIALWGGEQS--LRTGEADPDEVAGQ----LRDVFG 172

Query: 180  DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            DRLY  L RHR  D  R E+++   A  + LPLVA    L+ ++      D L A+ H  
Sbjct: 173  DRLYAFLARHRQADEVRTEARLRARAARYGLPLVAATEVLYHTQIRRPLQDTLTAIRHGV 232

Query: 239  VVSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
             VS   R R+ P  +H LK+  +  ++F+D P A+  T E+A RC+F L   A +  R+ 
Sbjct: 233  AVSTAGR-RLKPNAEHDLKSPHDFAALFADDPAAIARTEEVAGRCAFSL---AELRYRYP 288

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
             +   +     +  LR     G   R        G    D  ++L+ EL +I  +++ GY
Sbjct: 289  SERLPNGTTSSQR-LRQLTFEGARRRY------DGEVPPDVLRQLETELALIDALEYPGY 341

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL + + +Q+ ++  I +  GRGS A S   Y L IT IDP+R  LLFERF++ +R   P
Sbjct: 342  FLTMWEIVQFCRQRGI-LCQGRGSAANSAVCYCLGITAIDPVRMGLLFERFISKERAEPP 400

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+D   +RR+EVI++V + YG    A +      + ++A+RDVG+AL +P + +DRL 
Sbjct: 401  DIDLDIQHNRREEVIQHVYDTYGRSHAAMVANVIRYRPRSAVRDVGKALGLPETSMDRLA 460

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVD---RLLEISQKLEGLYRHASTHAAGIV 533
            KL+        S     +    R+A L DP       LL +S ++    RH S H  G +
Sbjct: 461  KLL--------SHHGDIEPEALRQAGL-DPETPLHRHLLRLSSEILETPRHLSIHPGGFL 511

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QR 592
            +G  P+  +VP+         V Q++   +E  GL K D LGL  L+ L      L   R
Sbjct: 512  LGHDPIWTIVPVENATMPGRTVIQWDKDDLEALGLFKVDLLGLGALSHLDLCFRLLKHHR 571

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G+ +D++ IP +D  T+ ++    T+G+FQ+ES      L  ++P    D++  VS+ RP
Sbjct: 572  GLDLDMAGIPPNDPSTFEMIQRADTVGVFQIESRAQMAMLPRLRPRSFYDLVIEVSIVRP 631

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GPI   +V  Y  R+ G+E ++  HP + P+L++T GV ++QEQVM++A + + Y+  EA
Sbjct: 632  GPIAGGMVHPYLRRRRGEEPVLYPHPSLQPVLEKTLGVPLFQEQVMRLAMIAADYTPGEA 691

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            D LRR M   +    +++ +ER IS     GI+   A  +F  +  F +YGF +SHAA++
Sbjct: 692  DQLRRDMAAWRGPGRIERHRERLISRMQTKGIAAEFAERVFSQIQGFGEYGFPESHAASF 751

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT------ 823
            A+I+Y TAW+K HYP EF  A +  +           +DA++  + + P           
Sbjct: 752  ALIAYATAWLKRHYPAEFTCALLNAQPMGFYVPATIVEDAKRHGLLVRPVDAQASTWDCT 811

Query: 824  --PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
              PC     G   I   L  +KG+       I +A    PF SL DF  R     L++  
Sbjct: 812  LEPCPQSAAG-FAIRMGLRYVKGLREGDWNRIEQARHIAPFTSLADFSRRTG---LDKGA 867

Query: 882  LESLVFAGALDCFGY---------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            L  L  AGA + FG           RM L  +L    +    V    T   E   A    
Sbjct: 868  LTVLAEAGAFEGFGSVGTAQDRLDRRMALWGALGCQSE----VTPLPTVVQEASPALTPL 923

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR- 991
              +++I  +    ++S                GHPL   +  L+   +K    ++A++R 
Sbjct: 924  GVAEEIAWDYRRTDHSP--------------RGHPLAPLRKALQAQSLKD-ARTIASMRH 968

Query: 992  GNNIRLAAMVVSKQQKKTRKG 1012
            G+ +R A +V+ +Q+  T  G
Sbjct: 969  GSRVRYAGLVICRQRPGTASG 989


>gi|256372382|ref|YP_003110206.1| DNA polymerase III, alpha subunit [Acidimicrobium ferrooxidans DSM
            10331]
 gi|256008966|gb|ACU54533.1| DNA polymerase III, alpha subunit [Acidimicrobium ferrooxidans DSM
            10331]
          Length = 1053

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 298/1034 (28%), Positives = 487/1034 (47%), Gaps = 82/1034 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            L  S + V L  HSS+S L+G +   ++++  A     A+A+TD N L+    F + A  
Sbjct: 7    LRVSEAVVELHAHSSFSFLDGVVDPEDLVEAAAVAGYRALALTDHNGLYGVPRFLEAARR 66

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+ P++G +L +        T +     P    +V+L ++ EGY+ L  +++  ++   
Sbjct: 67   VGVVPLVGAELTL-----ATTTPRAGATDPEGEHLVVLAASPEGYRALSRVIATGHMRTG 121

Query: 125  GKQSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             K    + +  L E   + G  +L G    P  RA        AE+ + +  + FGD L 
Sbjct: 122  EKGRFDLTIDDLAEAAPSGGWFVLAGWRKSPPGRALAHAGPSAAERSVRSLWERFGDALV 181

Query: 184  VNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L       D  R   +  +   H LP+VAT     +      A  V  A+     + +
Sbjct: 182  LELVDTLDPADTVRNDVLAAIGAHHGLPVVATQAVHAIDVRTQRAAVVAAAIRARRTLGE 241

Query: 243  KDR-------PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR- 294
             D        P + P   L+ R      F   P  ++  VE+A RC+F + + AP LPR 
Sbjct: 242  LDGYLPGAGPPVLRPARALRAR------FGRYPGVVDAAVELAARCAFNVDLVAPGLPRD 295

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARM 351
             +    DD          ++A+  L    A    G  A       + Q +D EL+VI  +
Sbjct: 296  VVAMGVDD----------DEALVALVAERAPRRYGPRAAPRIPGAWEQ-IDHELDVIRSL 344

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F+GYFL+V D + +  +  I    GRGS A S   YAL IT++DP+   LLFERFL+P+
Sbjct: 345  GFAGYFLVVTDIVDFCVREGI-YCQGRGSAANSAVCYALGITNVDPVALGLLFERFLSPE 403

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+D    RR+EVI+YV  +YG  R AQ+ +  + +A++ALRD  R   +  + 
Sbjct: 404  RDGPPDIDVDIESRRREEVIQYVYTRYGRARAAQVASVITYRARSALRDSARVFGVDQAT 463

Query: 472  VDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            +    K +     H  S+ +++A+        L  P+V  + E++  LEG  RH   H  
Sbjct: 464  LAAWSKGV----EHRGSVARSLAERDGAGRPLLEVPAV--IAEVASVLEGAPRHLGVHVG 517

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+V+ DRP+  + P          V Q++     + GL+KFD LGL  L  + + +D + 
Sbjct: 518  GMVLCDRPIVDVCPTEWARAEGRSVLQWDKDDCARMGLVKFDLLGLGMLEAIHEMVDLVR 577

Query: 591  QR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            +R GV+VD++ +   D   Y +L    ++G+FQ+ES      L  ++P    D++  V+L
Sbjct: 578  ERVGVEVDIATLE-QDPAVYEMLARADSVGVFQVESRAQMATLPRLRPSRFYDLVVEVAL 636

Query: 650  YRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             RPGPI    V  Y  R+ G+E +V  HPL +  L +T GV ++QEQ+MQ+A  ++G+S 
Sbjct: 637  IRPGPIQGGSVHPYLRRRAGEEPVVYPHPLAERALAKTLGVPLFQEQLMQLAMDVAGFSA 696

Query: 708  SEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            +EAD LR+AMG K+    M +  +R ++G +  G+       +   L  FA++GF +SHA
Sbjct: 697  AEADELRQAMGAKRSSARMARLHDRLMAGMAARGVDPAAREQVVTQLEAFANFGFPESHA 756

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A++A + Y +AW K HYP  F A  +  +       +   +DAR+  + ++ P V     
Sbjct: 757  ASFAWLVYVSAWFKVHYPAAFYAGLLRAQPMGFWSPQTLVRDARRHGVGVLGPDVTRSSA 816

Query: 827  DFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
               V    G+  +   L A++G+   TA  I+   A +PFDSL D   RV+   L    +
Sbjct: 817  RADVVVRDGEQLLALGLDAVRGIAAATASSIV---AMRPFDSLLDLVQRVE---LTPEQI 870

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI----FAHEKGTFSDKI 938
              L  AGA           L++L+   + A W       +H  +    F   +  F    
Sbjct: 871  RRLAGAGA-----------LRALEPSGQRAIWFADELARRHRMLDGLGFPSSEPVFPALD 919

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
              E+ ++E  +         LG     HP+   +  L  +G+   ++  +   G  +R+A
Sbjct: 920  PRERAALEVDA---------LGLLVGDHPMAFVRERLSTLGVVRADQLASQRHGRRVRVA 970

Query: 999  AMVVSKQQKKTRKG 1012
              V  +Q+  T +G
Sbjct: 971  GTVTHRQRPGTARG 984


>gi|326381920|ref|ZP_08203613.1| error-prone DNA polymerase [Gordonia neofelifaecis NRRL B-59395]
 gi|326199346|gb|EGD56527.1| error-prone DNA polymerase [Gordonia neofelifaecis NRRL B-59395]
          Length = 1096

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 298/1023 (29%), Positives = 484/1023 (47%), Gaps = 78/1023 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS+YS L+GA     ++++        +A+TD +  +  + F++ A   G+  +
Sbjct: 72   YAELHAHSAYSFLDGASMPEAMVEEAQRLGLRGLALTDHDGFYGVVRFAEAAREFGMPTV 131

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L ++     + + +     P    + +L   AEGY+RL  +++  ++    K  +R
Sbjct: 132  FGAELSLE-----RDSARAGAVDPPGEHLQVLARRAEGYRRLSRVIADAHMTGGEKGLLR 186

Query: 131  ICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
               + + E    G  ++LTG   G + RA      + A   L      FG   + V L  
Sbjct: 187  YDAAAITEHAAAGDWLILTGCRKGAVRRALDRGGKRAAGAALGEMIDRFGIGNVAVELSP 246

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD--R 245
              G D   R + +  LA  H +P VAT  + F + E+      + A+   T ++  D   
Sbjct: 247  GPGSDDDERNAILASLAAQHRVPTVATTGAHFAAPENGRLATAMAAIRARTDITTIDGWM 306

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            P V   H L+N  EM+ +     EA++N V  A  C+F L++ AP LP F   +      
Sbjct: 307  PGVGGAH-LRNGDEMLRLMPAHREAIDNAVAFADECAFSLKLIAPSLPPFDVPD----GH 361

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E   LR      L  R A+G         D  +++D EL +I  + F GYFL+V D + 
Sbjct: 362  SESTWLRE-----LTERGARGRYGTREQRPDAYRQIDHELAIIEALTFPGYFLVVHDIVS 416

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            + K+N+I +  GRGS A S   YAL IT++DP+   LLFERFL+P+R   PD D+D   D
Sbjct: 417  FCKENDI-LCQGRGSAANSAVCYALGITNVDPVANHLLFERFLSPERDGPPDIDVDIESD 475

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+E I++V  K+G    AQ+    + + ++A+RD  RAL     Q D   K+  + P  
Sbjct: 476  RREEAIQHVYAKHGRSHSAQVANVITYRGRSAVRDTARALGYAPGQQDAWSKIPDSAP-- 533

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                    DD R               E++ ++  L RH   H+ G+VI DRP++ + P 
Sbjct: 534  --------DDVR---------------EMAAQISSLPRHLGIHSGGMVICDRPIADVCPT 570

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
                 +   V Q++       GL+KFD LGL  L+ L   +D + + +GV VDL+ +   
Sbjct: 571  EWARMAGRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYMIDLVDEHKGVTVDLARLDLT 630

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
            +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  Y 
Sbjct: 631  EEAVYDMLCRADSVGVFQVESRAQMATLPRLKPRTFYDLVVEVALIRPGPIQGGSVHPYI 690

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKI 721
             R+NG E     HP ++  L  T G+ ++QEQ+MQ+A+ ++G+  +EAD LRRAMG K+ 
Sbjct: 691  RRRNGLEAPNCDHPSMEDALGRTLGIPLFQEQLMQVARDVAGFGAAEADQLRRAMGSKRS 750

Query: 722  KEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             E+M + ++RF  G  + NGI+  +A  I+E +A FA++GF +SH+ ++A + + +AW K
Sbjct: 751  PEKMQRLRQRFYDGMRETNGITGDLADRIYEKMAAFANFGFPESHSQSFASLVFYSAWFK 810

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC--VDFKVGDNRIYYS 838
             H+P  F AA +  +       +    DAR+  +Q+  P VN        + G   +   
Sbjct: 811  LHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVQVHRPDVNLSLSYAGLENGGLDVRIG 870

Query: 839  LAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AI+G+    A  I+E  SA  PF S+ D   RV++       LE++  AGA +  G  
Sbjct: 871  LGAIRGLSDEVATRIVEERSAGGPFVSVADLSRRVEATTAQ---LEAIATAGAFESLGRD 927

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R   L                R ++ +        T      +E  +V+  S        
Sbjct: 928  RRAALWEAGAAAGL-------RNDQLDVTSPRGAPTLPGMSEVELTTVDALST------- 973

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G     +P +  +P L  MG+   +  ++   G+ + +   V  +Q+  T  G     
Sbjct: 974  --GVSPRAYPTEYLRPRLDAMGVVPADRLLSVADGSRVLVGGAVTHRQRPATASG----- 1026

Query: 1018 VTF 1020
            VTF
Sbjct: 1027 VTF 1029


>gi|111023190|ref|YP_706162.1| error-prone DNA polymerase [Rhodococcus jostii RHA1]
 gi|110822720|gb|ABG98004.1| DNA-directed DNA polymerase alpha subunit (DNA polymerase III alpha
           subunit) [Rhodococcus jostii RHA1]
          Length = 1084

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 279/924 (30%), Positives = 447/924 (48%), Gaps = 97/924 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS++S L+GA     ++++       AIA+TD +  +  + F++ A    ++  
Sbjct: 61  YAELHAHSAFSFLDGASPPEELVEEAVRLGLEAIALTDHDGFYGVVRFAEAAKELNMRTA 120

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L +D                    +++L    EGY+RL   ++  +L    K  +R
Sbjct: 121 FGSELTLDDA-----------------HLLVLARGQEGYRRLSREIAAAHLAGGEKGKLR 163

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
             L  L +       +LTG   G + +A        A  RL      FG DR+ V L  H
Sbjct: 164 YDLDRLTDAAGGHWQILTGCRKGHVRQALAAGGPDAAAARLRELIDRFGADRVTVELTHH 223

Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFL------------------SEEDYEAHDV 230
               D  R + + +LA  H LP++A+  + F                   S +D   H  
Sbjct: 224 GIAEDAERNASLAELAQQHGLPVIASTAAHFAGPPRRRLAMAMAAVRARQSLDDAAGHLA 283

Query: 231 LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
               AH                 L++  EM  +F+  PEA+    ++ R C+F L++ AP
Sbjct: 284 PAGGAH-----------------LRSGEEMAHLFAAYPEAVRGAADLGRECAFDLRLIAP 326

Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            LP F   +       E + LR   + G   R      A     + YRQ ++ EL++I  
Sbjct: 327 QLPPFDVPDG----HTEASWLRQLTMDGARRRYG----APADRPEAYRQ-IEHELDIITG 377

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           + F GYFL+V D + + K N+I +  GRGS A S   YA+ IT++DP+R  LLFERFL+P
Sbjct: 378 LNFPGYFLVVHDIVSFCKNNDI-LCQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLSP 436

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
           +R   PD D+D   DRR+E I++V  KYG +  AQ+    + + K+++RD+ RAL     
Sbjct: 437 ERDGPPDIDVDIESDRREEAIQHVYAKYGRQYAAQVANVITYRGKSSVRDMARALGFSQG 496

Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRF----REARLADPSVDRLLEISQKLEGLYRHAS 526
           Q D   K +                SR+    +E     P    +LE++ ++EG  RH  
Sbjct: 497 QQDAWSKQV----------------SRWGGIGKEVGTDIPPA--VLELAAQIEGFPRHLG 538

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            H+ G+VI DRP++ + P+      +  V Q++       GL+KFD LGL  L+ L   +
Sbjct: 539 IHSGGMVICDRPIADVCPVEWARMENRSVLQWDKDDCAAVGLVKFDMLGLGMLSALHYMI 598

Query: 587 DFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
           D +A+ +G++VDL+ +   +   Y +L    ++G+FQ+ES      L  ++P    D++ 
Sbjct: 599 DLVAEHKGIEVDLAQLDLSEEAVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVV 658

Query: 646 LVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            V+L RPGPI    V  Y  R+N  E +   HP ++  LK T GV ++QEQ+MQ+A  ++
Sbjct: 659 EVALIRPGPIQGGSVHPYIRRRNKLEPVTYDHPSLEKALKRTLGVPLFQEQLMQMAVDVA 718

Query: 704 GYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGF 761
           G+S +EAD LRRAMG K+  E+M++ + R   G  + +GI   +A  I+E L  FA++GF
Sbjct: 719 GFSPAEADQLRRAMGSKRSPEKMERLRGRLYQGMRELHGIGDDVADRIYEKLYAFANFGF 778

Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            +SH+ ++A + + ++W K H+P  F A  +  +       +    DAR+  + +    +
Sbjct: 779 PESHSQSFAALVFYSSWFKLHHPAAFCAGLLRAQPMGFYSPQSLVADARRHGVPVHGADI 838

Query: 822 NTPCVDFKV--GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLN 878
           N       V  G   +   L  ++ +GT  A  I+E+  D  P+ S  D   RV+   L+
Sbjct: 839 NASLAHATVEAGGTEVRLGLGEVRHIGTALAERIVESRGDGGPYTSFLDLTGRVE---LS 895

Query: 879 RRVLESLVFAGALDCFGYSRMQLL 902
               ESL  AGALD FG SR + L
Sbjct: 896 TAQAESLATAGALDSFGLSRREAL 919


>gi|281490990|ref|YP_003352970.1| DNA polymerase III subunit alpha [Lactococcus lactis subsp. lactis
            KF147]
 gi|281374748|gb|ADA64268.1| DNA polymerase III, alpha subunit [Lactococcus lactis subsp. lactis
            KF147]
          Length = 1060

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 300/1036 (28%), Positives = 509/1036 (49%), Gaps = 99/1036 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS L+  + +++ L+         + I D  NL +A  F +KA    +QPI
Sbjct: 2    FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            I  +L+ + +             P   S +      EGY+ L+ + +   L + G++   
Sbjct: 62   ISIELNFEWRG-----------LPIAFSFI--AKDTEGYKNLLRIST---LHNYGRRQFS 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               + L  I    ++  T GS   +        S VA++  +   +L       NL    
Sbjct: 106  DIQNHLSGIAL--ILPETYGSLSELTEL-----SSVADEAFIGIDQLTDKGAKFNLP--- 155

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                              LP  A     +L+  D E   +L AV         D      
Sbjct: 156  -----------------TLPFPAIR---YLNFADNEILAILHAVRDGVPF---DESLTIS 192

Query: 251  DHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             + L  R E    +     P+AL+N   +  + ++       +LPRF      D +++  
Sbjct: 193  SNELLQRPEAYETYFQKYFPQALKNLSALTAKIAYQFD-EKLVLPRF------DKKRQAV 245

Query: 309  NELRNKAVAGLEVRLAQGAI---AKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVAD 362
              LR +A  GL  RL +  +       + QD   Y++RL+ EL+VI +M F  YFLIVAD
Sbjct: 246  EHLREEATLGLSARLEEKKLLTDVSSANLQDLSVYQERLEKELSVIHQMGFDDYFLIVAD 305

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A++  I  G GRGS AGS+ AY L IT +DP++ +L FERFLNP+R++MPD DID 
Sbjct: 306  LLRYAREQEIYCGMGRGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVAMPDIDIDM 365

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              DRR E++ Y++N+YG + VAQI+TF +L  + ALRDVG+A  M  +++  L +++   
Sbjct: 366  PDDRRAELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLTRMLVR- 424

Query: 483  PAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                     +AD+      F+   L +  + R+ E+++++EG+ R  STHA+G+V+ +  
Sbjct: 425  -----RFGTLADEYENNQHFKAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVVLSEES 479

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VD 597
            L   V +      DL +TQ+    +E  GL+K DFLGL+ LT++ +  D + +R    +D
Sbjct: 480  LVNYVSL--KPSEDLALTQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLVKRRQKNDID 537

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               I  +D +T  L     T+GIFQ E+  MR+ L  + P   +DI+   S++RPGP   
Sbjct: 538  PLKINLEDEDTLALFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQF 597

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  R++GKE + ++   I  +LK T G++IYQEQ+MQ+AQ  +G+SL +AD+LRRA+
Sbjct: 598  IPQFVARRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAI 657

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             KK   E++K +E F+  AS NG SK  A  I++L+ +FA+YGFN+SH  AY  +++Q A
Sbjct: 658  SKKKGSELEKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIA 717

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            + K H+P EF    +        K +    DA +   +I  PS+N   +   V + +I  
Sbjct: 718  YFKAHFPDEFYEIKL-----RDRKREVMILDALENGFEIEKPSINLMKIGDFVKNKKIRL 772

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             LA ++G+    A+ I+E   ++P+  L DF  ++ +    +  +  L+  GA D    +
Sbjct: 773  GLAHVQGISRDLAKWIVE---NQPYKDLADFVEKLPNNFHKKENILPLIQIGAFDYADSN 829

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R +L  +L +      +         ++IF    G        E +S    + +++ E+ 
Sbjct: 830  RGKLAYNLADHANLLNYYS-------DDIFMASSGGGFAYHEAEDYS---ETEKYDFEKN 879

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            +LG   + HPL   + + R+     +      ++   + +   +   +  + + G  + +
Sbjct: 880  LLGIGVTPHPL---QNLARRFE-GNFTPLAQLVKNRRMTILVEINYIRTHRAKTGQTMAF 935

Query: 1018 VTFSEPAKEYEANFFP 1033
            +T S+  + ++   FP
Sbjct: 936  LTVSDSRENFDVTLFP 951


>gi|225874743|ref|YP_002756202.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC
            51196]
 gi|225794171|gb|ACO34261.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC
            51196]
          Length = 1071

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 301/1038 (28%), Positives = 511/1038 (49%), Gaps = 78/1038 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V L   S++S L+ A     + D+ A    PA+A+ D N L+ A  F   A    I+  
Sbjct: 5    YVELHAASAFSFLQAASQPEKLTDRAAEIAMPALALLDHNGLYGAARFHTAAQRNNIRAH 64

Query: 71   IGCQLDID-----MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            IG ++ +            + +Q K+    +P   LL  + EGYQ L +L++R  + ++ 
Sbjct: 65   IGAEIAVSSFGPRWLPPAWLPHQCKSEPTRIP---LLCESREGYQNLCQLITRFKMREET 121

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184
            K+S       L E  + GL+ LTGG  GP+  A          + +    ++FG   +YV
Sbjct: 122  KESGAATFDDLSEYAS-GLVCLTGGDEGPLAAALSSGGEAAGREAVEELTRIFGRGSVYV 180

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH+  +  +R    +++A +  LP++ATN     +  + E  D+  A+ +   + Q 
Sbjct: 181  ELQRHQDREEEWRNQAALRIARSLNLPVIATNGVRHATPYEREVLDLFTAIRNHIELDQA 240

Query: 244  DRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R   T    +L+  SEM ++F D+P A+ENT+ ++ R  F L       PR+   + D 
Sbjct: 241  GRLLATNSQRHLRTASEMTALFRDIPGAVENTLVLSSRLGFQLHDLGYEFPRYPVPDGDT 300

Query: 303  IQKEEENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +    ++ LR +   G+  R A    +G + +       +++++ EL +IA++ F+GYFL
Sbjct: 301  M----DSFLRKRVEEGVLRRYAPKNDRGLMERA------KKQVEHELTLIAKLGFAGYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV D I++ ++++I V  GRGS A SV  Y L IT +DP+   LLFERFL+  R   PD 
Sbjct: 351  IVWDIIRFCQQHDILV-QGRGSAANSVVCYCLEITAVDPVGMDLLFERFLSESRNEWPDI 409

Query: 419  DIDF-CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D+D   +++R++ I+YV  +YG    A      + + K+A R+ G+AL      + RL  
Sbjct: 410  DLDLPSEEKREQAIQYVYRRYGELGTAMCANVITYREKSAARETGKALGFDEETLGRLSS 469

Query: 478  LIP------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            L        N      +      D   R AR+A     + +E+S +++ L RH   H+ G
Sbjct: 470  LAGQWEWRGNTDTMAHTFHHAGFD--IRHARIA-----KYIELSMRIQDLPRHLGQHSGG 522

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI    L+++VP+ R   ++  V Q++ +     G+IK D LGL  + +L   L+ + +
Sbjct: 523  MVICQGHLNKVVPLERASMANRHVVQWDKEDCADLGIIKVDLLGLGMMAVLHDCLELIPR 582

Query: 592  R-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              G KVDL+ +P DD E Y ++    T+G+FQ+ES     +L    P    D++  V++ 
Sbjct: 583  HYGNKVDLAQLPQDD-EVYRVVQRADTVGMFQIESRAQMASLPRNCPRKFYDLVVQVAII 641

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGPI   ++  Y  R+ GKE +   HP + P+L+ T GV ++QEQ+++IA  ++ +S +
Sbjct: 642  RPGPIVGQMMHPYMRRRQGKEAVTYPHPSLVPVLERTLGVPLFQEQLLRIAMTVADFSGA 701

Query: 709  EADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EAD LRRA+G ++  E M   +    +G ++NGI +     I + ++ FA YGF +SHAA
Sbjct: 702  EADELRRAVGMRRSWERMKNLEGNLRAGMTRNGIDERTQDTIVQQISSFALYGFPESHAA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++A+I+Y +A++K  Y   F AA +  +           +DA++  +++ P       +D
Sbjct: 762  SFALIAYASAYLKVKYLAAFTAAILNNQPMGFYSPAVLVKDAQRHGLRVKP-------ID 814

Query: 828  FKVGDNRIYYSLAAIKG----VGTTTARHIMEASA---------DKPFDSLEDFCSRVDS 874
             +V + R      +  G    +G   AR +   SA         D PF S+ED   RV  
Sbjct: 815  VQVSEWRCTVEHESDGGLALRIGLGYARQLKRESAEALVRSRLQDGPFRSVEDVAQRVPF 874

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
              LNR+ L+ L   GAL+         LQ +++ ++ A W +  R  K E        + 
Sbjct: 875  --LNRKELKRLAEIGALN--------QLQGIEH-RRDALW-QIERAGKLEGPLLANAESL 922

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             +          N   R   +    G     HP+   +  LR+  I   ++      G  
Sbjct: 923  REDSEARPLQQMNVEERLVADYAGTGLTVGRHPMHYRRAELRRANILSAQDLRQRRDGEY 982

Query: 995  IRLAAMVVSKQQKKTRKG 1012
            +R+A  ++++Q+  T KG
Sbjct: 983  VRVAGCIIARQRPGTAKG 1000


>gi|171910611|ref|ZP_02926081.1| DNA polymerase III, alpha subunit [Verrucomicrobium spinosum DSM
           4136]
          Length = 1032

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 289/916 (31%), Positives = 472/916 (51%), Gaps = 63/916 (6%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L   +++S L GA S   ++ + A      +AITD +  + +     K    G++ 
Sbjct: 2   SFVELHARTAFSFLRGASSPEEMMTRAADLGMDCVAITDRDGYYGSARAHYKGKELGLRA 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I G  ++I M+D        +T  P      LLV+T +GYQ L  L++R  L     QS 
Sbjct: 62  ITG--MEITMED--------ETVLP------LLVATRQGYQNLARLMTRAKLRTTKGQS- 104

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ---VAEKRLLTFKKLFG-DRLYVN 185
           R+  S L E   EG+++L+G   GP+ RA   N+++   V EK      ++FG +++++ 
Sbjct: 105 RVLWSELPE-HAEGVVVLSGDEEGPVQRALQQNAAEAPAVVEK----LCRIFGRNQVWME 159

Query: 186 LQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           LQRHR   +  R  Q+  LA   +LPL+A+N      +E     D    + H T +    
Sbjct: 160 LQRHRMRGETLRNRQIRDLAELCKLPLLASNGPCHARQEGRMLMDAFTCLRHHTHLDAAG 219

Query: 245 RPRVTPD--HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              + P+   +LKN  +M ++F+DLPEA++NT  ++ +  F L+      P      C D
Sbjct: 220 L-LLAPNSQRHLKNHGDMKALFADLPEAMDNTRRLSDQLEFGLEHLGYEFP------CYD 272

Query: 303 IQ--KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
           +    ++++ LR     G   R   G  A+       R +L+ EL++I+R+KFSGYFLIV
Sbjct: 273 VPPGHDQDSYLRELTYEGARRRFHGGVNAQ------VRAQLEKELDLISRLKFSGYFLIV 326

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
              +++A  ++I V  GRGS A S   Y+L IT  DP+   LLFERFL+  R S PD D+
Sbjct: 327 WSLVKYACDSDILV-QGRGSAANSAVCYSLGITHADPIAGKLLFERFLSEGRNSWPDIDL 385

Query: 421 DF-CQDRRDEVIRYVQNKY---GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           D    DRR++VI+ +  +Y   G    A +IT+   + ++A+R++G+ L +P   + R  
Sbjct: 386 DLPSGDRREQVIQELYRRYAPYGAAMTANVITY---RGRSAMREMGKVLNLPEDVMGRFS 442

Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            L  N    P +LQ + D  R     +  P +  ++ +  ++ GL RH   H+ G+V+  
Sbjct: 443 DLYANGD-FPHTLQ-LKDQIRQAGLPMDHPRLVAMVRLYHQVYGLPRHLGQHSGGMVLCT 500

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
           + L  +VP+         V Q++    E  G+IK D LGL  + +LQ SL     RG + 
Sbjct: 501 KGLDSIVPLEPATMPGRVVVQWDKDDCEDLGIIKVDLLGLGMMAVLQDSLTLCKARGREG 560

Query: 597 DLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              L  IP DD  TY ++    T+G+FQ+ES      L  ++P+C  D++  V++ RPGP
Sbjct: 561 PYGLHEIPKDDPATYEMMQKADTIGVFQIESRAQMATLPRLKPECFYDLVIEVAIIRPGP 620

Query: 655 IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           I   +V  Y  R+ G+EKI  IH   + +L+ T GV ++QEQ++++A +++G+S  EA+ 
Sbjct: 621 IVGNMVHPYIRRRQGREKIDFIHAEFEDILQRTLGVPLFQEQLLRMAMVIAGFSGGEAEE 680

Query: 713 LRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           LRRAM   + +E M K  ++  +   + G+++ +   I   ++ FA YGF +SHA ++A+
Sbjct: 681 LRRAMSFHRSEERMHKVMDKLRAAMEERGVAQEVQEKITACISSFALYGFPESHAISFAI 740

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
           ++  + W+K H  VEF A  +  +           +DA+Q  ++I P  V    V   V 
Sbjct: 741 LANASVWLKAHRAVEFYAGLLNNQPMGFYSTSTLVRDAKQHGLRIRPACVVVSDVLCTVE 800

Query: 832 DNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
           D++ +   L   +G+   +   I+   A +P+  L+DF  R    K  RRVL     AGA
Sbjct: 801 DDQTLRLGLNQFRGLSRGSQERIIAERAVRPWRDLDDFLRRSGLDKKERRVLAK---AGA 857

Query: 891 LDCFGYSRMQLLQSLD 906
           L+  G  R   L  ++
Sbjct: 858 LNQLGLHRRSALWQVE 873


>gi|226365695|ref|YP_002783478.1| error-prone DNA polymerase [Rhodococcus opacus B4]
 gi|226244185|dbj|BAH54533.1| error-prone DNA polymerase [Rhodococcus opacus B4]
          Length = 1084

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 277/908 (30%), Positives = 450/908 (49%), Gaps = 65/908 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS++S L+GA     ++++       AIA+TD +  +  + F++ A    ++ +
Sbjct: 61  YAELHAHSAFSFLDGASPPEELVEEAVRLGLEAIALTDHDGFYGVVRFAEAAKELNMRTV 120

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L +D                    +++L    EGY+RL   ++  +L    K  +R
Sbjct: 121 FGSELSLDDA-----------------HLLVLARGQEGYRRLSREIAAAHLAGGEKGRLR 163

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
             L  L +       +LTG   G + +A        A  RL      FG DR+ V L  H
Sbjct: 164 YDLDRLADAAGGHWQILTGCRKGHVRQALADGGPDAAAARLRDLIDRFGADRVTVELTHH 223

Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D  R + + +LA  H L ++A+  + F           + AV     +       +
Sbjct: 224 GVAEDAERNACLAELAQRHGLRVIASTAAHFAGPPRRRLAMAMAAVRARQSLDDA-AGYL 282

Query: 249 TP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            P    +L++  EM  +F+  P+A+    E+   C+F L++ AP LP F   +       
Sbjct: 283 APAGGAHLRSGEEMAHLFAAYPDAVRGAAELGLECAFDLRLIAPQLPPFDVPDG----HT 338

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
           E + LR   + G   R      A     + YRQ ++ EL +I  + F GYFL+V D + +
Sbjct: 339 EASWLRQLTMDGARRRYG----APADRPEAYRQ-IEHELGIITGLNFPGYFLVVHDIVSF 393

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            K N+I +  GRGS A S   YA+ IT++DP+R  LLFERFL+P+R   PD D+D   DR
Sbjct: 394 CKNNDI-LCQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLSPERDGPPDIDVDIESDR 452

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+E I++V  KYG +  AQ+    + + K+++RD+ RAL     Q D   K +       
Sbjct: 453 REEAIQHVYTKYGRQYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSKQV------- 505

Query: 487 VSLQAIADDSRF----REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                    SR+    +EA    P    +LE++ ++EG  RH   H+ G+VI DRP++ +
Sbjct: 506 ---------SRWGGIGKEAGTDIPPA--VLELAAQIEGFPRHLGIHSGGMVICDRPIADV 554

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            P+     ++  V Q++       GL+KFD LGL  L+ L   +D +A+ +G++VDL+ +
Sbjct: 555 CPVEWARMANRSVLQWDKDDCAAVGLVKFDMLGLGMLSALHYMIDLVAEHKGIEVDLAQL 614

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V 
Sbjct: 615 DLSEEAVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVH 674

Query: 661 -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG- 718
            Y  R+N  E +   HP ++  LK T GV ++QEQ+MQ+A  ++G+S +EAD LRRAMG 
Sbjct: 675 PYIRRRNKLEPVTYDHPSLEKALKRTLGVPLFQEQLMQMAVDVAGFSPAEADQLRRAMGS 734

Query: 719 KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
           K+  E+M++ + RF  G  + +GI   +A  I+E L  FA++GF +SH+ ++A + + ++
Sbjct: 735 KRSPEKMERLRGRFYQGMRELHGIGGDVADRIYEKLFAFANFGFPESHSQSFAALVFYSS 794

Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRI 835
           W K H+P  F A  +  +       +    DAR+  +++    VN       V  G   +
Sbjct: 795 WFKLHHPAAFCAGLLRAQPMGFYSPQSLVADARRHGVRVHGADVNASLAHATVEAGGTEV 854

Query: 836 YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              L  ++ +GT  A  I+++  D  P+ S  D   RV+   L+    ESL  AGALD F
Sbjct: 855 RLGLGEVRHIGTALAERIVDSRGDGGPYTSFLDLTGRVE---LSTAQAESLATAGALDSF 911

Query: 895 GYSRMQLL 902
           G SR + L
Sbjct: 912 GLSRREAL 919


>gi|260903724|ref|ZP_05912046.1| error-prone DNA polymerase [Brevibacterium linens BL2]
          Length = 1127

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 310/1025 (30%), Positives = 488/1025 (47%), Gaps = 76/1025 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  +  L VHS +S L+GA     ++   AA    ++A+TD N L+ A+ F+  A   G+
Sbjct: 89   SVEWAELHVHSQFSFLDGASDPEELVAAGAAAGLTSLALTDHNGLYGAVRFAHAAAEVGL 148

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
              + G +L + +++ +     G+T  P    +++L    EGY RL   ++   L  +  +
Sbjct: 149  PTVFGAELSVGLEEKIP----GQTD-PDATHLLVLARGVEGYHRLSMAITEANLAGEKNR 203

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
             V   L  L  +  +  I LTG   GP+ RA   N        L     LFG DRL V L
Sbjct: 204  PV-FGLEELAAMSGDWTI-LTGCRKGPLRRAL--NDPDGGLGALRKLIALFGADRLAVEL 259

Query: 187  QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KD 244
             R    D   R   +  LA    LP+VA+N+  F +   +++  V  +V     + +   
Sbjct: 260  SRDGTPDDDERLRHLGDLAQRTHLPIVASNSVHFATRAQWKSAQVRASVRSRLSLDELAG 319

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                T +  +    EM + F    +ALEN V I R CSF+L    P LPR      DD  
Sbjct: 320  WLPATANARIHTGEEMAARFPR--QALENAVAIGRECSFVLNSARPDLPR--APMPDDRG 375

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ--RLDFELNVIARMKFSGYFLIVAD 362
             EE   LR       E+   +GA   G  A++ +   +LD E+++IA + F GYFLIV D
Sbjct: 376  AEEY--LR-------ELIEDRGARRYGTRAENPKAWAQLDREMDMIATLGFCGYFLIVYD 426

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
              ++  +  I    GRGS A S   Y L IT +D ++  LLF+RFL+PDR   PD DID 
Sbjct: 427  ITEFCHRVAI-FCQGRGSAANSAVCYVLDITAVDAVKHELLFDRFLSPDRKGYPDIDIDI 485

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI+YV + +G ER AQ+    + +AK+A+RD   +L     Q D   K     
Sbjct: 486  ESGRREEVIQYVYDHFGRERAAQVANVITYRAKSAIRDAAFSLGYEPGQQDAFSKA---- 541

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
             ++  S    A+DS         P    +L I+  L G  RH   H+ G+++ DRP+ ++
Sbjct: 542  -SNRWSTLPEAEDS---------PVPAPVLTIADDLLGSPRHLGIHSGGMILADRPIGEV 591

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
            VP+ +       V Q++        L+KFD LGL  LT L + +D + +  G  ++ + I
Sbjct: 592  VPIEKATMGHRTVVQWDKDDCAVMDLVKFDLLGLGMLTALHEMVDLVHRHTGELIERAHI 651

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
              +D   Y +L     +G+FQ+ES      L  ++P+   D+   V+L RPGPI    V 
Sbjct: 652  DDEDEAVYTMLQKADAVGVFQVESRAQLATLPRLRPETFYDLAVQVALIRPGPIQGGSVH 711

Query: 661  -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+ G +K+  +HPL+   L +T GV ++QEQ+MQ+A  + G++ ++AD LR+AMG 
Sbjct: 712  PYIRRRQGLDKVEYLHPLLRKSLAKTYGVPLFQEQLMQMAIDVGGFTGADADQLRQAMGS 771

Query: 720  KIKEE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E+ M +  ++F +GA+ NG+ +  A +IF  +A FA+YGF +SHA ++A + YQ+AW
Sbjct: 772  RRSEKRMTELAQKFQTGAAANGVDEETAESIFSTIAAFANYGFPESHAISFANLVYQSAW 831

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------- 830
             K H+   F    +  +       +    DAR+  ++I+P  +        +        
Sbjct: 832  FKYHHHAAFTVGLLRSQPMGFYSPQSLVADARRHGVRILPVDIRHSMAGSDLERLESDGT 891

Query: 831  ---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               G+  I   L ++  VG + A  I+   A  PF S+ D   R     + ++ LE L  
Sbjct: 892  GDSGEFGIRLGLDSVSHVG-SFAEVIVTERAKAPFTSVADLAERT---GIGKQGLEGLAT 947

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGAL CF   R Q L           W+       H  +      T S   TL      +
Sbjct: 948  AGALSCFDLDRRQAL-----------WLAGGVAGAHPGVLP-GTATISSAPTLPTMDAFD 995

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +++    E    G    G+P ++ +  L + G     ++ A   G  + +AA+V  +Q+ 
Sbjct: 996  TTL---AELFSTGITVDGYPTEILRASLIERGYASTADAAAAADGTRMTVAAIVTHRQRP 1052

Query: 1008 KTRKG 1012
             T  G
Sbjct: 1053 ATASG 1057


>gi|329116894|ref|ZP_08245611.1| DNA polymerase III, alpha subunit [Streptococcus parauberis NCFD
            2020]
 gi|326907299|gb|EGE54213.1| DNA polymerase III, alpha subunit [Streptococcus parauberis NCFD
            2020]
          Length = 1034

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 267/829 (32%), Positives = 435/829 (52%), Gaps = 56/829 (6%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS-DLP 268
            PL+A     + S+ D E+   L A+  +  V+  +   V    +L +   +   F    P
Sbjct: 149  PLIALRKVRYFSDNDRESLQTLHAIRDN--VNLTETSLVEQGQFLDSVETVTDFFKVQFP 206

Query: 269  EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
            +AL+N   +    S+        LPRF      + +   +++LR     GL+        
Sbjct: 207  DALKNLENLTSTISYHFDSQLK-LPRF------NREIPAKDQLRQLTEEGLK-------- 251

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
             K     DY+ RL+ EL +I+ M F  YFLIV D +++ +     +G GRGS AGS+ AY
Sbjct: 252  KKNLWLPDYQVRLEKELQIISEMGFDDYFLIVWDLLRFGRSKGYYMGMGRGSAAGSLVAY 311

Query: 389  ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
            +L IT IDP++  LLFERFLN +R SMPD DID     R E + YV+N+YG +  AQI+T
Sbjct: 312  SLEITGIDPIKNDLLFERFLNKERYSMPDIDIDLPDIYRSEFLHYVRNRYGSDHSAQIVT 371

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAHPVSLQAIADDSRFREARLADPS 507
            F +   K A+RDV +   +P  ++  L K I   D    V  + I+    FR+   +   
Sbjct: 372  FSTFGPKQAIRDVFKRFGVPEYELSHLTKKIGFKDTLDSVYEKNIS----FRQFVNSRLE 427

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
              R  EI++++EG  R  S HAAGIV+ D  L+  +P+   +  D+ +TQ++   +E  G
Sbjct: 428  YQRAFEIAKRIEGNPRQTSIHAAGIVMSDDNLTDHIPL--KLGDDMMITQYDAVAVEANG 485

Query: 568  LIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGL+ LT +QK  +     +G+ + ++ I  +D +T  L     T GIFQ E +
Sbjct: 486  LLKMDFLGLRNLTFVQKMKEKLFKDQGIDISIADINLEDSDTLALFARGDTKGIFQFEQN 545

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            G    L+ ++P   E+I+A  SL RPG  D    +  R+NG+E +  I P+I P+L+ T 
Sbjct: 546  GAISLLKRIKPVRFEEIVATTSLNRPGASDYTNNFIKRRNGQEVVDLIDPVIAPILESTY 605

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK   EM K +  F++GA++ G S   A
Sbjct: 606  GIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKNSAEMKKLESEFLAGAAQLGRSLETA 665

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F    M     +      + 
Sbjct: 666  KLLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPGIFFDVIMNYSNSD------YI 719

Query: 807  QDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             DA   + +++P S+N  P  D KV  N I   +  IKG+    A  I+E   ++PF  +
Sbjct: 720  SDALDSDFKVIPLSINNIPYTD-KVEKNTILMGMKNIKGLPRDFAYWIIE---NRPFSGI 775

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
            E F +R+  K   +  L  L+  G  D F  +R +++++ + +  +         N+  +
Sbjct: 776  ESFMTRIPEKYKKKEALIPLIQIGLFDQFEPNRKKVIENCEALLVF--------VNELGS 827

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            +FA    ++ D    + +S   +S +++ EQ ++G   S HPL       RK     +  
Sbjct: 828  LFADSSFSWVDA---DDYS---NSEKYQLEQEIIGVGLSKHPLLALAEKTRKQ----FTP 877

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANFFP 1033
                ++  +  +   + S +  +T+  G ++ +++ ++  K+++   FP
Sbjct: 878  ITKLVKDTDAEILVQIDSIRIIRTKSNGQQMAFLSVTDTKKKFDVTIFP 926



 Score = 46.6 bits (109), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 14/110 (12%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F  L   + YS ++  + L +   +        I I D +NL++A  F       G+QPI
Sbjct: 2   FAQLDTKTVYSFMDSLVDLEHYFTEAKKLGYKTIGIMDKDNLYAAYHFITGCQKHGLQPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRM 119
           +G ++D   QDNL              ++ L+    +GY+ L+++  S+M
Sbjct: 62  LGLEIDYPSQDNLM-------------TLFLIAQNNQGYKNLLKISTSKM 98


>gi|87307671|ref|ZP_01089815.1| DNA polymerase III alpha subunit [Blastopirellula marina DSM 3645]
 gi|87289841|gb|EAQ81731.1| DNA polymerase III alpha subunit [Blastopirellula marina DSM 3645]
          Length = 1033

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 304/1030 (29%), Positives = 487/1030 (47%), Gaps = 81/1030 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   +  L   +++S LE A     ++ +       A+AITD ++L   +  +  A   G
Sbjct: 6    KKMRYAELYCRTNFSFLEAASHPEELVARAQELDYAALAITDFSSLAGVVRANTAAKECG 65

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +IG ++               TP    P +VL      GY  L  L++      + +
Sbjct: 66   LKILIGVEI---------------TPTDGWP-VVLWAKNRAGYANLCRLIT----TGRRR 105

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                 C   + +I      +L G  S         NS Q + + +  ++++FG   Y+  
Sbjct: 106  APKGECQLTVADIAAHAAHLLCGVVSPA-------NSEQFSPQGVGRYREIFGAGGYLLA 158

Query: 187  QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q  RG +D  R   +  L+    LPLVA    LF + +    HDVL A+ H T V+Q   
Sbjct: 159  QLQRGPHDHDRVDCLQTLSQQTRLPLVAAGGVLFHTPKRKPLHDVLTAIRHHTTVAQAG- 217

Query: 246  P--RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            P  +   + +L+ R  +  +F+ LP A+E TVEIA +C+F L               D++
Sbjct: 218  PYLQTNAERHLRERDVIARLFAGLPHAVERTVEIADQCTFSL---------------DEL 262

Query: 304  QKEEENELRNKAVAGLEVR---LAQGAIAK--GYHAQDYRQRLDFELNVIARMKFSGYFL 358
            + E   EL    +  +E       QGA  +  G      R+ L  EL +I  +++  YFL
Sbjct: 263  RYEYPEELAPPGMTPIEYLRQLTWQGAAMRYPGELPTKIRELLQHELTLIEELRYEPYFL 322

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
             V D +++A+  +I +  GRGS A S   Y L +T +DP R ++LFERF++ +R   PD 
Sbjct: 323  TVWDLVRFARTRDI-LCQGRGSAANSAVCYCLGVTAVDPGRVNVLFERFISRERDEAPDI 381

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF  +RR+EV++Y+  KYG ER        + + ++A+RDVG+AL +    VDRL K 
Sbjct: 382  DVDFEHERREEVLQYLYEKYGRERAGMTAVTITYRPRSAIRDVGKALGLSLDLVDRLAKN 441

Query: 479  IPNDPAHPVSLQAIADDSRFREARL-ADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGD 536
              +  A P   Q      R REA L    SV R  L + Q+L G  RH S H  G+VI  
Sbjct: 442  ADHYRA-PTDFQV-----RCREAGLDGRSSVGRQFLYLVQQLIGFPRHLSQHTGGMVITR 495

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595
             PL  LVP+         V ++N   ++  G++K D L L  LT ++K    + Q  G  
Sbjct: 496  GPLHDLVPIENAAMPGRTVVEWNKDDLDDLGILKVDCLALGMLTAIRKCFALIEQTTGQL 555

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ IP  D + Y ++    T+G+FQ+ES      L  +QP C  D++  V++ RPGPI
Sbjct: 556  HTLASIPEGDEQVYEMICQADTIGVFQIESRAQMSMLPRLQPRCYYDLVIEVAIVRPGPI 615

Query: 656  --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              D +  Y  R++G+E+    +  I  +L++T GV ++QEQ MQ+A + +G++  EAD L
Sbjct: 616  QGDMVHPYLRRRSGEEEATYPNDAIQGVLEKTLGVPLFQEQCMQLAIVAAGFTPGEADQL 675

Query: 714  RRAMGKKIKEE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAMG   +   +D+ + + + G  +NG+S   A  +F  +  F +YGF +SHAA++A++
Sbjct: 676  RRAMGAWRRPGVIDQFRIKLLEGMQRNGLSGDFAERVFLQIRGFGEYGFPESHAASFALL 735

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW+K HYP EF AA +  +        +  QDAR+ ++ I P  VN    D  +  
Sbjct: 736  VYVSAWLKCHYPAEFAAAIINSQPMGFYAPAQLIQDARKHDVAIRPIEVNNSDWDCTIET 795

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              +   L  I G+    A+ IM A  D  F SL DF  R     L +  +  L  A AL 
Sbjct: 796  GALRLGLRMIGGLQQAAAQAIMTARRDGRFHSLSDFAKRT---ALPQSQILPLAEADALS 852

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                +R   L ++  +         +   + + +F   +      + L     E      
Sbjct: 853  SMNPTRRDALWNVLGV---------DAPTRQKTLFDDLEPDAEPPVWLPAMLPEEE---V 900

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              + R  G     HPL  ++  L  +G+       A      +++A +V+ +Q+  T KG
Sbjct: 901  HADYRTTGLSLRAHPLSFHRERLTMLGVTSAAALAAIANNAAVKVAGIVLLRQRPSTAKG 960

Query: 1013 SRIGWVTFSE 1022
              I +VT  +
Sbjct: 961  --ITFVTLED 968


>gi|42561210|ref|NP_975661.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
            SC str. PG1]
 gi|42492708|emb|CAE77303.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
            SC str. PG1]
 gi|301320544|gb|ADK69187.1| putative DNA polymerase III DnaE [Mycoplasma mycoides subsp. mycoides
            SC str. Gladysdale]
          Length = 987

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 301/1033 (29%), Positives = 516/1033 (49%), Gaps = 105/1033 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L + + Y  LE  ++++  ++ I  ++      ++T+ ++   EF +KA    I+PIIG 
Sbjct: 7    LTIKNQYDFLESLITIDQYIEFIKKNKLSYAFYSETHTMYGVAEFFKKATDNNIKPIIG- 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             L I+ +D+ K+              ++     +GYQ ++  VS  +L D          
Sbjct: 66   -LTIEFEDSTKL--------------IIYAKNKKGYQ-ILNFVSS-FLNDGFNHYDYEIK 108

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
             ++ E+    ++++   S                    L FK    D+L          D
Sbjct: 109  EYILELVNNNVVVIGLISD-------------------LDFKTHLIDKLN---------D 140

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
             + + + + L +         N   +L   D + +++L A+  +  +   D+ + T +++
Sbjct: 141  DFYDVKELNLYF---------NQISYLDINDQKTYNILNAIKTNKTI---DQIQNTNNYF 188

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
              +   ++  +S     LEN  ++    +F +  +      F   +   ++ +  N L +
Sbjct: 189  YPDNDYLIKNYS-----LENIKKVINEINFKVDFNL-----FDSNKKHLVKYKNINNLSS 238

Query: 314  ----KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
                + V  L ++  Q  I      + Y  RL++EL VI +M FS YFLIV+D++ +AKK
Sbjct: 239  FEYLRQVCLLSLKKYQQKIKPNLDLKLYISRLNYELEVIKQMGFSDYFLIVSDYVNFAKK 298

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N+I VGPGRGS AGS+ +Y L ITDIDPL + LLFERFLNPDR ++PD D+DF  +RR+E
Sbjct: 299  NDILVGPGRGSAAGSLISYLLRITDIDPLEYDLLFERFLNPDRSNLPDIDLDFQDNRREE 358

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V+ Y+  KYG   V  I T+ ++  K A RDV R   +    V+++ K++  D       
Sbjct: 359  VLEYLFEKYGKYHVGMITTYQTIGYKMAWRDVCRVFNIDLLIVNKISKVL--DQYTNSDF 416

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                 +++       +     +     K+ GL R  STHAAGIV+ D  L +LVP+ +  
Sbjct: 417  LEFIKENKLLNDYFQNNVFKEIFITMHKIVGLPRQTSTHAAGIVLTDCDLRELVPI-KIG 475

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ--KSLDFLAQRGVKVDLSLIPFDDHE 607
             + +  TQF+M +++  GLIK D LGL+ LT +Q  K L +L Q  +K+ L+ I  +D +
Sbjct: 476  FNGINQTQFDMNYLDDLGLIKMDILGLRNLTTIQEIKHLIYLNQ-NLKISLNKIDLNDKK 534

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY-NNRKN 666
             + LL  K T GIFQLES GM   +  MQ D IE I    +LYRPGP + I +Y  N+K 
Sbjct: 535  AFELLKNKQTSGIFQLESKGMTDLISKMQVDSIELISIASALYRPGPQEMISIYLENKKT 594

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             K KI  I   +  +LK T G+IIYQEQVMQ+   +  +S ++AD++RRAM KK  + M 
Sbjct: 595  NKFKI--IDQSVFEILKPTYGIIIYQEQVMQMLNKVVNFSYAKADIIRRAMSKKNNKVMQ 652

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              K  FI+ A KN  S   A  I+  + KF++YGFNKSH+ +Y+ ISY  A+ K H+  E
Sbjct: 653  SMKLEFINSAVKNNFSYNKANLIWNWIEKFSNYGFNKSHSISYSYISYWLAYFKAHFTTE 712

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  + +   + N  K +++ ++   + I++  PSV     ++++ + +IY  L  IK +G
Sbjct: 713  FYTSLLDQNIGNEIKTQQYIKELYDYKIKVNKPSVINANFNYQIINKQIYMPLTCIKSIG 772

Query: 847  TTTARHIMEASADKP--FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
                + I  A ++    +  + +F   +  +K++  VL++L+ AGALD F Y++  ++++
Sbjct: 773  YEVVKKINLAKSENENMYLDIHNFILAMIKQKISVNVLQTLIKAGALDIFNYNKKTMIEN 832

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            LD +   A     N   +  NI   E      KI L  +      +    E+ + GF+  
Sbjct: 833  LDLLISQA-----NAYKQVNNILDDE------KINLIIYDEYEDEILASFEKELYGFFIE 881

Query: 965  GHPLDVYKPILRKMGIKGYEES---VATIRGNNIR-LAAMVVSKQQKKTRKGSRIGWVTF 1020
             +P       + K+    ++ +   ++ +  N ++ +   ++  ++ K +  +++ +VT 
Sbjct: 882  QNP-------ILKLKTSNFDLNLIDISKLEYNKVQVILGYILKIKEIKDKNNNKMAFVTI 934

Query: 1021 SEPAKEYEANFFP 1033
             +   E E   F 
Sbjct: 935  FDNTSELELTIFS 947


>gi|146318196|ref|YP_001197908.1| DNA polymerase III DnaE [Streptococcus suis 05ZYH33]
 gi|145689002|gb|ABP89508.1| DNA polymerase III, alpha subunit [Streptococcus suis 05ZYH33]
          Length = 1036

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 271/818 (33%), Positives = 437/818 (53%), Gaps = 52/818 (6%)

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEI 277
            F  EE  E+  VL A+  +  ++Q     V     L +   + ++FS+  P+A++N  ++
Sbjct: 160  FFEEEQLESLQVLHAIRDNIPLNQV--SDVDSRQKLLSADSLTNLFSNRFPQAVDNLRDL 217

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
                S+ L      LPRF             N  R  AV  L  R  QG   KG     Y
Sbjct: 218  VAGISYQLNTDLK-LPRF-------------NRDR-PAVEELYERSYQGLEEKGLTNSLY 262

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            ++RL+ EL++I +M+F  YFLIV D +++ +     +G GRGS  GS+ AYAL IT IDP
Sbjct: 263  KERLEKELSIIHQMEFDDYFLIVWDLLRFGRSQGYYMGMGRGSAVGSLVAYALNITGIDP 322

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
            ++ +LLFERFLN +R SMPD DID     R + IRYV+++YG    AQI+T+ +  AK A
Sbjct: 323  VKHNLLFERFLNAERYSMPDIDIDIPDIHRADFIRYVRDRYGSTHAAQIVTYSTFGAKQA 382

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
            +RDV +    P  ++  + K I    +   + Q    ++ FR+   +     +   I+Q+
Sbjct: 383  IRDVFKRFGTPEYELSNITKKISFRDSLTSAYQR---NAAFRQIINSKIEYQKAFAIAQQ 439

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EG  R  S HAAGIV+ D  L+  +P+   +  D+ VTQ++   +E  GL+K DFLGL+
Sbjct: 440  IEGQPRQTSIHAAGIVMSDEELTDTIPL--KIGDDMLVTQYDAHAVEANGLLKMDFLGLR 497

Query: 578  TLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT +QK  + + +R   ++D++ I  +D +T  L     T GIFQ E  G    L  ++
Sbjct: 498  NLTFVQKMAEGVRERYQQEIDIAKIDLEDKKTLELFAAGRTKGIFQFEQPGAISLLRRVK 557

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            P   EDI+A  SL RPG  D    +  RK+G+E +  + P I P+L+ T G+++YQEQVM
Sbjct: 558  PGRFEDIVATTSLNRPGASDYSDNFVKRKHGQETVDLLDPTIAPILQPTYGIMLYQEQVM 617

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            QIAQ+ +G++L +AD+LRRAM KK  +EM   +  F+ GA KNG ++  A  IF ++AKF
Sbjct: 618  QIAQVYAGFTLGKADLLRRAMSKKNAQEMQAMEAEFLQGALKNGHAEENAREIFGMMAKF 677

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A YGFN+SHA AY+ +++Q A+ K+HY   F    +            + +DA QF+ ++
Sbjct: 678  AGYGFNRSHAYAYSALAFQMAYFKSHYTDVFFDVMLN------HSSSAYIEDAMQFDFEV 731

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
               ++N      K   +++Y  L  +KG+    A  I++    +P+ S+EDF  R+    
Sbjct: 732  ARLTINNIPYHDKFDKSKVYLGLKTLKGLPKDLALWILD---HRPYKSVEDFILRLPDNF 788

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
              + +L  L+  G  D F  +R +++++LDN+  +A+ +           FA E  +++D
Sbjct: 789  KKKDLLIPLIQIGLFDDFDANRKKIIENLDNLFVFAEAI--------GTFFAEESYSWTD 840

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
               +E +S    S +F  EQ +LG   S HPL     I R+   + + +      GN   
Sbjct: 841  ---VEDYS---DSEKFMLEQELLGVGISPHPL---VNICRE-SKRSFTDLADLAVGNRAT 890

Query: 997  LAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
            +   + + +  +T+K G ++ ++  ++  +  +   FP
Sbjct: 891  VLVQIQAIRLIRTKKTGEQMAFLRVTDTKRTLDVTLFP 928



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 13/106 (12%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
              L   + Y+ ++  +++ + + +       A+ I D N+L++A  F +     G+QPI
Sbjct: 2   LAQLDTKTVYTFMDSMVTIESYVGRAKELGYHALGIMDKNSLYAAYSFMESCNKMGLQPI 61

Query: 71  IGCQLDIDMQ-DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
           IGC+LD  +Q +   +T Q            L+  T  GY+ L+++
Sbjct: 62  IGCELDWKLQGEEQDITTQ------------LIALTTRGYRNLLKI 95


>gi|253751378|ref|YP_003024519.1| DNA polymerase III alpha subunit [Streptococcus suis SC84]
 gi|253753279|ref|YP_003026419.1| DNA polymerase III alpha subunit [Streptococcus suis P1/7]
 gi|253755890|ref|YP_003029030.1| DNA polymerase III alpha subunit [Streptococcus suis BM407]
 gi|251815667|emb|CAZ51255.1| DNA polymerase III alpha subunit [Streptococcus suis SC84]
 gi|251818354|emb|CAZ56178.1| DNA polymerase III alpha subunit [Streptococcus suis BM407]
 gi|251819524|emb|CAR45104.1| DNA polymerase III alpha subunit [Streptococcus suis P1/7]
 gi|292557997|gb|ADE30998.1| DNA polymerase III alpha subunit [Streptococcus suis GZ1]
 gi|319757664|gb|ADV69606.1| DNA polymerase III alpha subunit [Streptococcus suis JS14]
          Length = 1036

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 271/818 (33%), Positives = 437/818 (53%), Gaps = 52/818 (6%)

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEI 277
            F  EE  E+  VL A+  +  ++Q     V     L +   + ++FS+  P+A++N  ++
Sbjct: 160  FFEEEQLESLQVLHAIRDNIPLNQV--SDVDSRQKLLSADSLTNLFSNRFPQAVDNLRDL 217

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
                S+ L      LPRF             N  R  AV  L  R  QG   KG     Y
Sbjct: 218  VAGISYQLNTDLK-LPRF-------------NRDR-PAVEELYERSYQGLEEKGLTNSLY 262

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            ++RL+ EL++I +M+F  YFLIV D +++ +     +G GRGS  GS+ AYAL IT IDP
Sbjct: 263  KERLEKELSIIHQMEFDDYFLIVWDLLRFGRSQGYYMGMGRGSAVGSLVAYALNITGIDP 322

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
            ++ +LLFERFLN +R SMPD DID     R + IRYV+++YG    AQI+T+ +  AK A
Sbjct: 323  VKHNLLFERFLNAERYSMPDIDIDIPDIHRADFIRYVRDRYGSTHAAQIVTYSTFGAKQA 382

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
            +RDV +    P  ++  + K I    +   + Q    ++ FR+   +     +   I+Q+
Sbjct: 383  IRDVFKRFGTPEYELSNITKKISFRDSLTSAYQR---NAAFRQIINSKIEYQKAFAIAQQ 439

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EG  R  S HAAGIV+ D  L+  +P+   +  D+ VTQ++   +E  GL+K DFLGL+
Sbjct: 440  IEGQPRQTSIHAAGIVMSDEELTDTIPL--KIGDDMLVTQYDAHAVEANGLLKMDFLGLR 497

Query: 578  TLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT +QK  + + +R   ++D++ I  +D +T  L     T GIFQ E  G    L  ++
Sbjct: 498  NLTFVQKMAEGVRERYQQEIDIAKIDLEDKKTLELFAAGRTKGIFQFEQPGAISLLRRVK 557

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            P   EDI+A  SL RPG  D    +  RK+G+E +  + P I P+L+ T G+++YQEQVM
Sbjct: 558  PGRFEDIVATTSLNRPGASDYSDNFVKRKHGQETVDLLDPTIAPILQPTYGIMLYQEQVM 617

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            QIAQ+ +G++L +AD+LRRAM KK  +EM   +  F+ GA KNG ++  A  IF ++AKF
Sbjct: 618  QIAQVYAGFTLGKADLLRRAMSKKNAQEMQAMEAEFLQGALKNGHAEENAREIFGMMAKF 677

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A YGFN+SHA AY+ +++Q A+ K+HY   F    +            + +DA QF+ ++
Sbjct: 678  AGYGFNRSHAYAYSALAFQMAYFKSHYTDVFFDVMLN------HSSSAYIEDAMQFDFEV 731

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
               ++N      K   +++Y  L  +KG+    A  I++    +P+ S+EDF  R+    
Sbjct: 732  ARLTINNIPYHDKFDKSKVYLGLKTLKGLPKDLALWILD---HRPYKSVEDFILRLPDNF 788

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
              + +L  L+  G  D F  +R +++++LDN+  +A+ +           FA E  +++D
Sbjct: 789  KKKDLLIPLIQIGLFDDFDANRKKIIENLDNLFVFAEAI--------GTFFAEESYSWTD 840

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
               +E +S    S +F  EQ +LG   S HPL     I R+   + + +      GN   
Sbjct: 841  ---VEDYS---DSEKFMLEQELLGVGISPHPL---VNICRE-SKRSFTDLADLAVGNRAT 890

Query: 997  LAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
            +   + + +  +T+K G ++ ++  ++  +  +   FP
Sbjct: 891  VLVQIQAIRLIRTKKTGEQMAFLRVTDTKRTLDVTLFP 928



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 13/106 (12%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
              L   + Y+ ++  +++ + + +       A+ I D N+L++A  F +     G+QPI
Sbjct: 2   LAQLDTKTVYTFMDSMVTIESYVGRAKELGYHALGIMDKNSLYAAYSFMESCNKMGLQPI 61

Query: 71  IGCQLDIDMQ-DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
           IGC+LD  +Q +   +T Q            L+  T  GY+ L+++
Sbjct: 62  IGCELDWKLQGEEQDITTQ------------LIALTTRGYRNLLKI 95


>gi|125623350|ref|YP_001031833.1| DNA polymerase III DnaE [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492158|emb|CAL97087.1| DNA polymerase III alpha subunit [Lactococcus lactis subsp. cremoris
            MG1363]
 gi|300070098|gb|ADJ59498.1| DNA polymerase III DnaE [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 1070

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 306/1051 (29%), Positives = 518/1051 (49%), Gaps = 119/1051 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS L+  + L++ L+         + I D  NL +A  F +KA    +QP+
Sbjct: 2    FAPLNTKTEYSFLDSVVKLDDYLEGALRLGYKTVGICDVGNLHAAFRFVRKAQMLNLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-V 129
            I  +L+ + +             P   S   +    EGY+ L+  +S  +  D+ + S +
Sbjct: 62   ISIELNFEWRG-----------LPV--SFSFIAKNTEGYKNLLR-ISTFHNYDRRQFSDI 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            +  LS        G+ ++   + G +        S++A          F D  Y+ +   
Sbjct: 108  QNHLS--------GIALVIPETYGTLSEL-----SELAA---------FADEAYIGI--- 142

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                     Q         LP +      +L+  D E   +L AV     +S  +   V+
Sbjct: 143  --------DQQTDKGTKFNLPTLPFPAVRYLNFADNEILAILHAVRDG--LSFDESLTVS 192

Query: 250  PDHYLKNRSEMVSIFSD-LPEALEN----TVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             +  L+      S F    P+AL N    T +IA +    L+     LPRF      D +
Sbjct: 193  SNELLQRPEAYESYFQKYFPQALTNLSVLTAKIAYQFDEKLE-----LPRF------DKK 241

Query: 305  KEEENELRNKAVAGLEVRLAQ-------------GAIAKGYHAQD---YRQRLDFELNVI 348
            +E    LR +A+ GL  RL +              A+A+     D   Y++RL+ EL+VI
Sbjct: 242  REAVEHLREEAILGLSARLEEKKSLTEISSVSLASALAEESTTIDLSVYQERLEKELSVI 301

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F  YFLIVAD +++A++ +I  G GRGS AGS+ AY L IT +DP++ +L FERFL
Sbjct: 302  HQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVKHNLFFERFL 361

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R++MPD DID   DRR E++ Y++N+YG + VAQI+TF +L  + ALRDVG+A  M 
Sbjct: 362  NPERVAMPDIDIDMPDDRRAELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMT 421

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRH 524
             +++  L +++            +AD+     RF+   L +  + R+ E+++++EG+ R 
Sbjct: 422  EAELSNLTRMLVR------RFGTLADEYENNQRFKAEVLKNGKLKRIYEVARRIEGMPRQ 475

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             STHA+G+V+ +  L   V +      DL +TQ+    +E  GL+K DFLGL+ LT++ +
Sbjct: 476  TSTHASGVVLSEESLMNYVSL--KPSEDLALTQYEAPDVEAIGLLKIDFLGLRNLTIISR 533

Query: 585  SLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
              D + +R  + +D   I  +D  T  L     T+GIFQ E+  MR+ L  + P   +DI
Sbjct: 534  LRDLVKKRQKIDIDPLKIDLEDETTLALFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDI 593

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            +   S++RPGP   I  +  R++GKE +  +   I  +LK T G++IYQEQ+MQ+AQ  +
Sbjct: 594  VDATSIFRPGPSQFIPQFVARRHGKEIVPVVDDSISEILKPTYGIMIYQEQIMQVAQAFA 653

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G+SL +AD+LRRA+ KK   E++K +E F+  A + G SK  A  I++L+ +FA+YGFN+
Sbjct: 654  GFSLGKADLLRRAISKKKGSELEKLREDFLISAGELGHSKEKAEEIYDLIERFANYGFNR 713

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH  AY  +++Q A+ K H+P EF    +        K +    DA     +I  P++N 
Sbjct: 714  SHGFAYGALAFQIAYFKAHFPDEFYEIQL-----RDRKREVMILDALDNGFEIEKPNINQ 768

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
              +   V + +I   LA ++G+    A+ I+E   ++ + +L DF  ++ +    +  + 
Sbjct: 769  MKIGDFVKNKKIRLGLAHVQGISRDLAKWIVE---NQSYKNLADFVEKLPNNFHKKESIL 825

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH-ENIFAHEKGTFSDKITLEK 942
             L+  GA D    +R +L  +L +          N  N + ++IF    G        E 
Sbjct: 826  PLIQIGAFDYADSNRGKLAYNLAD--------HANLLNYYSDDIFMASSGGGFAYHEAED 877

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            +S    + +++ E+ +LG   + HPL      L +     +      ++   + +   + 
Sbjct: 878  YS---ETEKYDFEKNLLGIGVTPHPLQS----LAQRFSGNFTPIANLVKNRRMTILVEIN 930

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +  +T+ G  + ++T S+  + ++   FP
Sbjct: 931  YIRTHRTKTGQTMAFLTVSDSRENFDVTLFP 961


>gi|226305466|ref|YP_002765426.1| error-prone DNA polymerase [Rhodococcus erythropolis PR4]
 gi|226184583|dbj|BAH32687.1| error-prone DNA polymerase [Rhodococcus erythropolis PR4]
          Length = 1095

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 280/908 (30%), Positives = 450/908 (49%), Gaps = 54/908 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS++S L+GA     ++++       AIA+TD +  +  + F++ A   G++ +
Sbjct: 61  YAELHAHSAFSFLDGASPPEELVEEAVRLGLEAIAVTDHDGFYGVVRFAEAAREWGMRTV 120

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L +D        + G T       +++L    EGY+RL   ++  +L    K  ++
Sbjct: 121 FGAELSLDSVPRTGTADPGGT------HLLVLARGQEGYRRLSREIAAAHLAGGEKGKLQ 174

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                L E       +LTG   G + +A      + A + L    + FG +R+ V L  H
Sbjct: 175 YNYDVLTEAAGGHWQILTGCRKGHVRQALTSGGREAAAEALQDLVERFGAERVSVELTHH 234

Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D  R + + +LA    L  VAT  + F +         + AV     + +      
Sbjct: 235 GLAEDDERNAVLAELARERGLRTVATTAAHFAAPPRRRLAMAMAAVRARQSLDEAAGWLA 294

Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK-- 305
            T   +L++ +EM ++FS  PEA+    ++ R C+F L++ AP LP F      D+    
Sbjct: 295 PTGGAHLRSGAEMATLFSLYPEAVSGAADLGRECAFDLKLIAPKLPPF------DVPAGH 348

Query: 306 EEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E + LR   + G   R    +GA       + Y+Q L+ EL +I  + F GYFL+V D 
Sbjct: 349 TEASWLRELTMVGALERYGPPEGA------PKAYKQ-LEHELAIIEGLNFPGYFLVVHDI 401

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           + + K N+I +  GRGS A S   YA+ IT++DP+R  LLFERFL P+R   PD D+D  
Sbjct: 402 VSFCKNNDI-LCQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLAPERDGPPDIDVDIE 460

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            DRR+E I++V  KYG    AQ+    + + K+++RD+ RAL     Q D   K      
Sbjct: 461 SDRREEAIQHVYAKYGRTYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSK------ 514

Query: 484 AHPVSLQAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              V      D +       AD  + R +LE++ ++EG  RH   H+ G+VI DRP++ +
Sbjct: 515 --QVGRWGGIDKN-------ADTDIPRPVLELAAQIEGYPRHLGIHSGGMVICDRPIADV 565

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            P+     ++  V Q++      AGL+KFD LGL  L+ L   +D +A+ +G+ VDL+ +
Sbjct: 566 CPVEWARMANRSVLQWDKDDCAAAGLVKFDLLGLGMLSALHYMMDLVAEHKGITVDLAQL 625

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V 
Sbjct: 626 DLSETAVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVH 685

Query: 661 -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG- 718
            Y  R+N  E +   HP ++  L+ T GV ++QEQ+MQ+A  ++G++ SEAD LRRAMG 
Sbjct: 686 PYIRRRNKLEPVSYDHPSLEKALERTLGVPLFQEQLMQMAVDVAGFTPSEADQLRRAMGS 745

Query: 719 KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
           K+  E+M++ + R   G    +GI   +A  I+E L  FA++GF +SH+ ++A + + ++
Sbjct: 746 KRSTEKMEQLRARLYQGMRDLHGIGDEVADRIYEKLYAFANFGFPESHSQSFAALVFYSS 805

Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRI 835
           W K H+P  F A  +  +       +    DAR+  +Q+    +N       V  G   +
Sbjct: 806 WFKLHHPAAFCAGLLRAQPMGFYSPQSLVADARRHGVQVHGADINVSLAHATVEAGGFEV 865

Query: 836 YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              L  ++ +G   A  I+E      PF S  D   RV+   L     ESL  AGAL  F
Sbjct: 866 RLGLGEVRNIGDALAEKIVEQRDLGGPFTSFLDLTGRVE---LTTAQAESLATAGALASF 922

Query: 895 GYSRMQLL 902
           G SR + L
Sbjct: 923 GISRREAL 930


>gi|116511322|ref|YP_808538.1| DNA polymerase III DnaE [Lactococcus lactis subsp. cremoris SK11]
 gi|116106976|gb|ABJ72116.1| DNA polymerase III catalytic subunit, DnaE type [Lactococcus lactis
            subsp. cremoris SK11]
          Length = 1070

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 302/1047 (28%), Positives = 517/1047 (49%), Gaps = 111/1047 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS L+  + L++ L+         + I D  NL +A  F +KA    +QP+
Sbjct: 2    FAPLNTKTEYSFLDSVVKLDDYLEGALRLGYKTVGICDVGNLHAAFRFVRKAQMLNLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-V 129
            I  +L+ + +             P   S   +    EGY+ L+  +S  +  D+ + S +
Sbjct: 62   ISIELNFEWRG-----------LPV--SFSFIAKNTEGYKNLLR-ISTFHNYDRRQFSDI 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            +  LS        G+ ++   + G +        S+++E         F D  Y+ +   
Sbjct: 108  QNHLS--------GIALVIPETYGAL--------SELSEL------AAFADEAYIGI--- 142

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                     Q         LP +      +L+  D E   +L AV     +S  +   V+
Sbjct: 143  --------DQQTDKGTKFNLPTLPFPAVRYLNFADNEILAILHAVRDG--LSFDESLTVS 192

Query: 250  PDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             +  L+      S F    P+AL N   +  + ++        LPRF      D ++E  
Sbjct: 193  SNELLQRPEAYESYFQKYFPQALTNLSVLTAKIAYPFDEKLE-LPRF------DKKREAV 245

Query: 309  NELRNKAVAGLEVRLAQ-------------GAIAKGYHAQD---YRQRLDFELNVIARMK 352
              LR +A+ GL  RL +              A+A+     D   Y++RL+ EL+VI +M 
Sbjct: 246  EHLREEAILGLSARLEEKKSLTGISSVSLANALAEESTMIDLSVYQERLEKELSVIHQMG 305

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F  YFLIVAD +++A++ +I  G GRGS AGS+ AY L IT +DP++ +L FERFLNP+R
Sbjct: 306  FDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVKHNLFFERFLNPER 365

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            ++MPD DID   DRR E++ Y++N+YG + VAQI+TF +L  + ALRDVG+A  M  +++
Sbjct: 366  VAMPDIDIDMPDDRRAELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAEL 425

Query: 473  DRLCKLIPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
              L +++            +AD+     RF+   L +  + R+ E+++++EG+ R  STH
Sbjct: 426  SNLTRMLVR------RFGTLADEYENNQRFKAEVLKNGKLKRIYEVARRIEGMPRQTSTH 479

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            A+G+V+ +  L   V +      DL +TQ+    +E  GL+K DFLGL+ LT++ +  D 
Sbjct: 480  ASGVVLSEESLVNYVSL--KPSEDLALTQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDL 537

Query: 589  LAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + +R  + +D   I  +D  T  L     T+GIFQ E+  MR+ L  + P   +DI+   
Sbjct: 538  VKKRQKIDIDPLKIDLEDEATLALFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDAT 597

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            S++RPGP   I  +  R++GKE +  +   I  +LK T G++IYQEQ+MQ+AQ  +G+SL
Sbjct: 598  SIFRPGPSQFIPQFVARRHGKEIVPVVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSL 657

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             +AD+LRRA+ KK   E++K +E F+  A + G SK  A  I++L+ +FA+YGFN+SH  
Sbjct: 658  GKADLLRRAISKKKGSELEKLREDFLISAGEMGHSKEKAEEIYDLIERFANYGFNRSHGF 717

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AY  +++Q A+ K H+P EF    +        K +    DA     +I  P++N   + 
Sbjct: 718  AYGALAFQIAYFKAHFPDEFYEIQL-----RDRKREVMILDALDNGFEIEKPNINQMKIG 772

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
              V + +I   LA ++G+    A+ I+E   ++ + +L DF  ++ +    +  +  L+ 
Sbjct: 773  DFVKNKKIRLGLAHVQGISRDLAKWIVE---NQSYKNLADFVEKLPNNFHKKESILPLIQ 829

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH-ENIFAHEKGTFSDKITLEKFSVE 946
             GA D    +R +L  +L +          N  N + ++IF    G        E +S  
Sbjct: 830  IGAFDYADSNRGKLAYNLAD--------HANLLNYYSDDIFMASSGGGFAYHEAEDYS-- 879

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
              + +++ E+ +LG   + HPL      L +     +      ++ + + +   +   + 
Sbjct: 880  -ETEKYDFEKNLLGIGVTPHPLQS----LAQRFSGNFTPIANLVKNSRMTILVEINYIRT 934

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +T+ G  + ++T S+  + ++   FP
Sbjct: 935  HRTKTGQTMAFLTVSDSRENFDVTLFP 961


>gi|172058225|ref|YP_001814685.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum
           255-15]
 gi|171990746|gb|ACB61668.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum
           255-15]
          Length = 1055

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 281/887 (31%), Positives = 448/887 (50%), Gaps = 82/887 (9%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            V L V ++YS L+  + ++  LD++      A AI +T+ L     F        + PI
Sbjct: 1   MVQLNVRTAYSPLQSTIRMDRYLDEVKRRGFSAAAICETS-LTGVPAFMAGCKQRELIPI 59

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G +  I+               P   +I+    T+ G + L  L S M + D       
Sbjct: 60  VGFEQVIE---------------PDELTILWYAKTSLGLKVLYRLASEMPVEDY------ 98

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK---LFGDRLYVNLQ 187
                     +E + +L      P D A      ++  + + +  K   L G +   +  
Sbjct: 99  ----------SELIAVLEPKRQAPEDEARL---RRLVAQWMGSAHKATILLGVKAVRSTV 145

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                +RYR     Q A    +  +  +   +L  E+ +A   L A+   T+ +++   +
Sbjct: 146 ERDSRERYR-----QAANALGIETIPIDPVRYLFREEADAFQALRAIDEGTMFAEQ---K 197

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           V+   +LK   E+   F+D    L     + R       +  P   R + +  DD     
Sbjct: 198 VSRSAHLKLTEELQDQFTDRELRL-----LTRWAESQETLTLPFQSRPLPQVTDD----- 247

Query: 308 ENELRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                N A+     RLA  G +A G+  ++  +RL +EL VI +  F+ YFLIV D ++ 
Sbjct: 248 ----SNHALN----RLAHDGLLAHGHVGEEATKRLQYELEVIEKTGFADYFLIVEDLVRH 299

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           AK   I VGPGRGS AGS+ +YAL IT +DPL++ LLFERFLNP+R++MPD DID    R
Sbjct: 300 AKSEGIRVGPGRGSAAGSLVSYALGITTVDPLKYGLLFERFLNPERITMPDIDIDIEDAR 359

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EV+ Y+  +YG + V QI T  +L AKAALRDV RAL+    + D   K +       
Sbjct: 360 REEVLEYLVERYGKQHVGQIGTLSTLGAKAALRDVARALEFSKDETDAAAKQL----GKV 415

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +LQ +   +             +LL+++Q +EGL R  S HAAG++IG   L +  P+ 
Sbjct: 416 TTLQGLEQQASIYRWFSGSEKRRQLLQLAQAIEGLPRQRSIHAAGVIIGSEELIETTPV- 474

Query: 547 RDVR-SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            D+  S   VTQ+ MK IE+ GL+K D LGL+ LT L++    +        +  IP +D
Sbjct: 475 -DLHASGRFVTQYLMKAIEQQGLLKIDLLGLRNLTRLRQMEQLIQHAYPDFSVERIPDED 533

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T  L     T  IFQ ES+GM+Q L  ++P+  ED++A +SL+RPGP+  I +Y  RK
Sbjct: 534 KATLRLFAKGETDQIFQFESAGMKQTLREVKPNRFEDLVATMSLFRPGPMKFIDLYAKRK 593

Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            G+   + +HP+++ +L  T GVI+YQEQ+M+I + ++G++L++AD+LRRA+ KK  + +
Sbjct: 594 AGQPYQM-VHPILEEILTATYGVIVYQEQIMEITRRVAGFTLAQADLLRRAISKKSSQSV 652

Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
           + +K+RFI GA +NG   T+A  +++ + +FA YGFN+SHA AY  ISY   +MK HYP 
Sbjct: 653 EAEKKRFIEGALQNGFDLTVAETLYDQIERFAGYGFNRSHAVAYTKISYALGYMKAHYPQ 712

Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            F   S    +D  E++ +  ++ R   + ++PP +        +    I   +  ++G+
Sbjct: 713 IFSLVS----IDQPERLVRVMREKR---LPVLPPDIWMSDFRSTLEGKGIRLGIQTLRGI 765

Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
                  + EA+  K   ++    S V   K  R  +E L+++GA D
Sbjct: 766 TEKDFHTLREAA--KTSQTITQLLSAVGWGKKERAKIELLLYSGAFD 810


>gi|296138661|ref|YP_003645904.1| DNA polymerase III subunit alpha [Tsukamurella paurometabola DSM
            20162]
 gi|296026795|gb|ADG77565.1| DNA polymerase III, alpha subunit [Tsukamurella paurometabola DSM
            20162]
          Length = 1093

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 300/1025 (29%), Positives = 486/1025 (47%), Gaps = 71/1025 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  H+++S L+GA     ++++  A    A+A+TD N  +  + F++ A   G+  +
Sbjct: 58   YAELHAHTAFSFLDGAAQPEEMVEQAHALGLTALAVTDHNGFYGVVRFAEAALGLGVPTV 117

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +     L+   +  T  P    +++L    EGY+RL   ++  ++    K  +R
Sbjct: 118  FGAELSL-----LRDAERTGTADPDGEHLLVLARGQEGYRRLSRAMAEAHMEAGEKGKLR 172

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L E       +LTG   G + R         A   L      FG DR+ + L  H
Sbjct: 173  FHPDRLAEWSEGHWHILTGCRKGAVRRGLDAAGPDGAAGALAHLLDRFGPDRVSMELTVH 232

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR--P 246
                D  R   +  +A    +  VAT  + F   +       L A+     + + D   P
Sbjct: 233  GVPEDDERNHLLAGVAARMGVGTVATTGAHFARPDQRRLAATLAAIRARRSLDELDGWLP 292

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK- 305
                 H L++  EM  +  + P A+   VE+A  C+F L++ AP LP F      D+   
Sbjct: 293  AAGGAH-LRSGDEMALLLPEHPGAIAGAVELAAECAFSLRLIAPNLPPF------DVPAG 345

Query: 306  -EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              E   LR     G   R          + + YRQ ++ ELNVI  + F GYFLIV   +
Sbjct: 346  HTEATWLRELTRRGALDRYGP----PESNPKAYRQ-IEHELNVIETLTFPGYFLIVHSIV 400

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             + ++++I +  GRGS A S   +AL IT +DP+R  LLFERFL P+R   PD D+D   
Sbjct: 401  SFCRESDI-LCQGRGSAANSAVCFALGITAVDPVRNGLLFERFLAPERDGPPDIDVDIES 459

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+E I++V   YG    AQ+    + + ++A+RD  RAL     Q D   K I +   
Sbjct: 460  DRREEAIQFVYRTYGRAYAAQVANVITYRGRSAVRDTARALGYSQGQQDAWSKQISS--- 516

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                         +R   + D   +R+++++ ++  L RH   H+ G+VI DRP++ + P
Sbjct: 517  -----------YGWRNDPVPDGVPERVIDLATQIADLPRHLGIHSGGMVICDRPIADVCP 565

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
                   D  V Q++      AGL+KFD LGL  L+ L  + D L + +G++VD + +  
Sbjct: 566  TEWARMQDRSVLQWDKDDCAAAGLVKFDLLGLGMLSALHYAQDLLKEHKGIEVDFAQLDL 625

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
             D   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  Y
Sbjct: 626  TDDTVYAMLRRADSVGVFQVESRAQMATLPRLKPRTFYDLVVEVALIRPGPIQGGSVHPY 685

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KK 720
              R+NG+E+    HP +   L+ T GV ++QEQ+MQ+A  ++ ++ +EAD LRRAMG K+
Sbjct: 686  IRRRNGQEEPRVEHPSMWKTLERTLGVPLFQEQLMQLAVDVADFTPAEADQLRRAMGSKR 745

Query: 721  IKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
              E+M++ +ERF  GA + +GI   +A  IFE LA FA++GF +SH+ ++A + + ++W 
Sbjct: 746  STEKMEQLRERFYRGAKQLHGIEGELADRIFEKLAAFANFGFPESHSQSFASLVFYSSWF 805

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT--PCVDFKVGDNRIYY 837
            K ++P  F AA +  +       +    DAR+  + +  P +N   P  + +     +  
Sbjct: 806  KCYHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDLNISLPWANLENAGMEVRL 865

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAAI+ +G   A  I+ E  A   +  L D  SRV+   L     E+L  +GALDCFG 
Sbjct: 866  GLAAIRTIGDELAERIVAEREAGGIYAGLTDLTSRVE---LTVAQAEALATSGALDCFGR 922

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVRFENE 955
             R Q L         A    + R ++          T     TL   S  E ++      
Sbjct: 923  DRRQALWE-------AGAAARERPDRLPGT-----ATAGAPPTLPGMSETELAAADVWAT 970

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
               +G Y    P +  +P L ++G+   ++ ++   G+ + +   V  +Q+  T  G   
Sbjct: 971  SVTVGKY----PTEFLRPKLDELGVIPADQLLSLPDGDRVLVGGAVTHRQRPATAGG--- 1023

Query: 1016 GWVTF 1020
              VTF
Sbjct: 1024 --VTF 1026


>gi|319948757|ref|ZP_08022877.1| error-prone DNA polymerase [Dietzia cinnamea P4]
 gi|319437590|gb|EFV92590.1| error-prone DNA polymerase [Dietzia cinnamea P4]
          Length = 1049

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 284/918 (30%), Positives = 447/918 (48%), Gaps = 77/918 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  H+++S L+GA S   + +  A     A+AITD + L+  + F++ A   G+  +
Sbjct: 3   YAELHAHTAFSFLDGASSPEAMAEAAAELGLTALAITDHDGLYGVVRFAEAASELGLATV 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L +   ++L +  +G+                EGY+RL   ++R +L    K   R
Sbjct: 63  FGAELSLPGGEHLLVLARGQ----------------EGYRRLSRAIARAHLRGGAKGEPR 106

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-------QVAEKRLLTFKKLFG-DRL 182
             ++ L E       +LTG   G + RA     +       + A   L    +LFG DR+
Sbjct: 107 YEITELAEAAGGHWYVLTGCRRGRVRRALERGGTGGPDFDTEAARTALEQLVELFGRDRV 166

Query: 183 YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVV 240
            V L  H    D  R   +  LA    LP+VAT  +     E      V+ A+ A   + 
Sbjct: 167 VVELTCHGVPEDTERCDALAGLAARAGLPVVATTAAHCAGPEGARLASVMAALGARDALE 226

Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
           +           +L++  EM  +F   P+A+     + R C+F L++ AP LP F   E 
Sbjct: 227 THAAHLPAAGGAHLRSGEEMADLFDRWPDAVAGADRLGRECAFDLRLIAPQLPPFDVPE- 285

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                 E+  L   A AG   R          +AQ  R     EL VIA + F GYFL+V
Sbjct: 286 ---GHTEDTMLAELAYAGAARRYGTREEMPEAYAQIGR-----ELKVIAELGFPGYFLVV 337

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            D +++ ++  I +  GRGS A S   Y+L IT++DP+R  LLFERFL P+R   PD D+
Sbjct: 338 HDIVEFCRREGI-LCQGRGSAANSAVCYSLGITNVDPVRAQLLFERFLAPERDGPPDIDV 396

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           D    RR+E I+YV ++YG +  AQ+    + + ++A+RDV RAL     Q D   K + 
Sbjct: 397 DIESGRREEAIQYVYSRYGRDYAAQVANVITYRGRSAVRDVARALGYSPGQQDAWSKSVD 456

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                      + +           P V   L ++++L GL RH   H+ G+VI DRP++
Sbjct: 457 R-------WSGLKNHEGEATEHTVPPDV---LALARQLVGLPRHLGIHSGGMVICDRPVA 506

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
            +VP+         V Q++       GL+KFD LGL  LT L  ++D  A+ + + VDL+
Sbjct: 507 DVVPVEWARMPGRTVLQWDKDDCAAVGLVKFDMLGLGMLTALHHAIDLAAEHKDLDVDLA 566

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            +   D + Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    
Sbjct: 567 KLDLADPQVYEMLCRGDSVGVFQVESRAQMATLPRLRPRTFYDLVVEVALIRPGPIQGGS 626

Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           V  Y  R+NG+EK+   HP ++ +L  T G+ ++QEQ+MQIA +++G++ +EAD LRRAM
Sbjct: 627 VHPYIRRRNGREKVEFDHPALEEVLGRTLGIPLFQEQLMQIATVIAGFTGAEADQLRRAM 686

Query: 718 G-KKIKEEMDKQKERFISGASK-NGISKT----------IAVNIFELLAKFADYGFNKSH 765
           G K+  E M + KERF +G  + +GI  +          +   I+E +  FA+YGF +SH
Sbjct: 687 GAKRSPERMARLKERFFAGMRELHGIGTSPPGTPYTGPEVGERIWEKMCAFANYGFPESH 746

Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
           + ++A I Y +AW K H+P  F AA +  +       +    DAR+  +     +V+ PC
Sbjct: 747 SQSFAAIVYYSAWFKCHHPAIFCAALLRSQPMGFYSPQSLVADARRHGV-----TVHRPC 801

Query: 826 VDFKVG-------DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKL 877
           V+  +G          +   L +++ +G   A  I  E  +  P+ S  D   R     L
Sbjct: 802 VNRSLGGATCENDGTEVRLGLESVRAIGEDLATAIADERDSHGPYTSAADLAGRT---GL 858

Query: 878 NRRVLESLVFAGALDCFG 895
           + R +E+L  AGALD  G
Sbjct: 859 SVRQMEALATAGALDSLG 876


>gi|83319615|ref|YP_424605.1| DNA-directed DNA polymerase III (polc) [Mycoplasma capricolum subsp.
            capricolum ATCC 27343]
 gi|83283501|gb|ABC01433.1| DNA-directed DNA polymerase III (polc) [Mycoplasma capricolum subsp.
            capricolum ATCC 27343]
          Length = 986

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 251/731 (34%), Positives = 401/731 (54%), Gaps = 37/731 (5%)

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            + V  L ++  Q  I      + Y  RL++EL +I +M FS YFLIV+D++ +AKKN+I 
Sbjct: 242  RQVCLLSLKKYQQKIKPNLDLKLYINRLNYELEIIKQMGFSDYFLIVSDYVNFAKKNDIL 301

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L ITDIDPL + LLFERFLNPDR ++PD D+DF  +RR+EV+ Y
Sbjct: 302  VGPGRGSAAGSLISYLLRITDIDPLEYDLLFERFLNPDRSNLPDIDLDFQDNRREEVLEY 361

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            +  KYG   V  I T+ ++  K A RDV R   +    V+++ K++  D           
Sbjct: 362  LFEKYGKNHVGMITTYQTIGYKMAWRDVCRVFNIDLLIVNKISKVL--DQYTNSDFLEFI 419

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
             +++       +     +     K+ GL R  STHAAGIV+ D  L +LVP+ +   + +
Sbjct: 420  KENKLLNDYFQNDLFKEIFITMHKIVGLPRQTSTHAAGIVLTDCDLRELVPI-KIGFNGI 478

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ--KSLDFLAQRGVKVDLSLIPFDDHETYHL 611
              TQF+M +++  GLIK D LGL+ LT +Q  K L +L Q  +K+ L+ I  +D + + L
Sbjct: 479  NQTQFDMNYLDALGLIKMDILGLRNLTTIQEIKHLIYLNQ-NLKISLNKIDLNDKKAFEL 537

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY-NNRKNGKEK 670
            L  K T GIFQLES GM   +  MQ D IE I    +LYRPGP + I +Y  N+K  K K
Sbjct: 538  LKNKQTSGIFQLESKGMTDLISKMQVDSIELISIASALYRPGPQEMIPIYLENKKTNKFK 597

Query: 671  IV--SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            I+  S++ ++ P    T G+I+YQEQVMQ+   ++ +S ++AD++RRAM KK  + M   
Sbjct: 598  IIDKSVYEILKP----TYGIIVYQEQVMQMLNKVANFSYAKADIIRRAMSKKNNKVMQSM 653

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K  FI+ A KN  S   A  I+  + KF++YGFNKSH+ +Y+ ISY  A+ K H+  EF 
Sbjct: 654  KLEFINSAIKNNFSYNKANLIWNWIEKFSNYGFNKSHSISYSYISYWLAYFKAHFTTEFY 713

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             + +   + N  K +++ ++   + I++  PSV     ++K+ + +IY  L  IK +G  
Sbjct: 714  TSLLDQNIGNEIKTQQYIKELYDYKIKVNKPSVINSNFNYKIINKQIYMPLTCIKSIGYE 773

Query: 849  TARHIMEASADKP--FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
              + I  A ++    +  + +F   V  +K+N  VL++L+ AGALD F Y++  ++++LD
Sbjct: 774  VVKKINLAKSENENMYLDIHNFILAVIKQKINVNVLQTLIKAGALDIFNYNKKTMIENLD 833

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             +   A     N   +  NI   E      KI L  +      +    E+ + GF+   +
Sbjct: 834  LLISQA-----NAYKQVNNILDDE------KINLIIYDEYEDEILASFEKELYGFFIDQN 882

Query: 967  PLDVYKPILRKMGIKGYEES---VATIRGNNIR-LAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            P       + K+    +  +   ++ +  N ++ +   ++  ++ K +  +++ +VT  +
Sbjct: 883  P-------ILKLKTNNFNLNLIDISKLEYNKVQVILGYILKIKEIKDKNNNKMAFVTVFD 935

Query: 1023 PAKEYEANFFP 1033
               E E   F 
Sbjct: 936  NTSELELTIFS 946


>gi|116748373|ref|YP_845060.1| DNA polymerase III subunit alpha [Syntrophobacter fumaroxidans MPOB]
 gi|116697437|gb|ABK16625.1| DNA polymerase III, alpha subunit [Syntrophobacter fumaroxidans MPOB]
          Length = 1003

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 294/1034 (28%), Positives = 493/1034 (47%), Gaps = 89/1034 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL VHS YS++ G  S+  +    +A     +A+TD    +  + F   A   GI P
Sbjct: 4    TFVHLHVHSHYSMMRGVSSVTALCRTASALGFEHLALTDDKGFYGLINFLDAARRFGIHP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G             T  G  P     + V+L  T  GY+ L EL +R +L        
Sbjct: 64   IVG-------------TTIGTGP----DTAVVLAKTPRGYELLSELTTRRHLDAD----- 101

Query: 130  RICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                S L++   G   L++LT      I +A         E          GDR      
Sbjct: 102  ---FSLLRDFPDGRRDLVVLTANPE--IIKALHPRRECGVE-----VVPGPGDR------ 145

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                       +++++A++  +P VATN   F   EDY  H ++ A+  +  +S   R  
Sbjct: 146  -----------RLLKMAHSLGVPPVATNAVHFAHLEDYSLHRLVRAIDLNLTLSNIPREE 194

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             V PD +L++ ++M       PEAL NT+++A  C         I P + ++  D     
Sbjct: 195  IVRPDQWLQSAAQMERRLPHCPEALANTLKLAGECHTKWDHFRTIFPHYRDRREDHFAL- 253

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L  K   G+  R  + + A         +RL  EL++I    +  YFL+VAD +  
Sbjct: 254  ----LLEKCRKGISWRYGRTSPA-------VEERLAEELDLIGAKGYVDYFLVVADIV-- 300

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
                  P+  GRGSGA S+ +Y L IT +DPLR +LLF RFLNP+R  +PD D+DF  D 
Sbjct: 301  ---GRRPIHCGRGSGAASLVSYLLGITHVDPLRHNLLFGRFLNPERKDLPDIDVDFPWDE 357

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD++   ++  YG ER+A +       A+AA+R+V R   +P +++  + + +       
Sbjct: 358  RDDLFEELRRHYGAERMATVANHVGFGARAAVREVARVYGVPAAEIKEVTRRMSFWTEPG 417

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               + I    +FR   L DP    +++++ +LE L RH S H  G++I    +S+ VP+ 
Sbjct: 418  AMWERIGTHPKFRGFPL-DPPWPEIIDLAGRLESLPRHLSMHCGGVIIAPDRISRHVPVQ 476

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS---LIPF 603
            R  +    + Q+     EKAGL+K D LG ++L +++ SL  + +   K DL    L P 
Sbjct: 477  RSAKGAR-IIQWEKDQAEKAGLVKIDLLGNRSLAVIRDSLAAIRENYGK-DLEYARLNPV 534

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +T   + T  T+G+F +ES  MR   +       E ++   S+ RP     I  Y +
Sbjct: 535  DDPDTREQIRTGRTMGVFYVESPAMRLLQQKAGCGDFEHLVIHSSIIRPAANRYIRDYLD 594

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R +G      +HP +  +L E  G+++YQE V+Q A +L+G+S  EAD LR+ + KK +E
Sbjct: 595  RLHGA-PYEPLHPSLAGLLAENYGILVYQEDVVQAAMILAGFSWGEADGLRKVISKKSRE 653

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            ++   + RF  G +  G+S  +   ++E+   F+ Y F K H+A+YA++S+++A++K HY
Sbjct: 654  QLSDYRSRFARGCAARGVSPDVVDRVWEMFISFSGYSFCKPHSASYALVSFKSAYLKAHY 713

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P EF+AA ++           +  ++R+  + +  P +N    +++ GD  +   L  ++
Sbjct: 714  PAEFMAAVLS-NGGGYYSTFAYVSESRRMGLTVAGPDINESAWNYRGGDRCVRMGLRQLQ 772

Query: 844  GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF--GYSRMQ 900
             +  +T   I+ E   + PF S+E+   RVD    +  +L     +GALD    G +R +
Sbjct: 773  NIRRSTLEDILAERGKNGPFASVEELLRRVDIPPSDGMILAR---SGALDSLSGGLNRPR 829

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL     I+ +        T  H  I A  +     +I +      +    + +E   LG
Sbjct: 830  LLWF---IEAWFNGAGVKGTAGHGQISAFPRP--RARIVVPPLPGFSPRQTWRHEMETLG 884

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            F  S HPL + +P+ RK+  +  + + +    G  +  A   +++++  TR+G  + +V+
Sbjct: 885  FVLSVHPLAMVEPMARKLPHRVTKAADLHRHVGERVCTAGWPITRKEVLTREGEPMEFVS 944

Query: 1020 FSEPAKEYEANFFP 1033
            F +    YE  FFP
Sbjct: 945  FEDRTAIYETVFFP 958


>gi|254523352|ref|ZP_05135407.1| DNA polymerase III, alpha subunit subfamily, putative
            [Stenotrophomonas sp. SKA14]
 gi|219720943|gb|EED39468.1| DNA polymerase III, alpha subunit subfamily, putative
            [Stenotrophomonas sp. SKA14]
          Length = 1036

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 307/1036 (29%), Positives = 485/1036 (46%), Gaps = 99/1036 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S   GA     +  + A     A+AITD  +L   +   Q A   G+ 
Sbjct: 6    PGYAELHCLSAFSFQRGASIAEELFARAAGQGYRALAITDECSLAGIVRAWQAAKTHGVA 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  ++                  P + LL +    Y  L +L++      +  + 
Sbjct: 66   LIVGAEFQVE----------------DGPKLALLCTDQTAYAGLCQLITTCR--RRAAKG 107

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
               CL        + L +  G     +DR       Q A   L   +  F DRL++ ++ 
Sbjct: 108  EYRCLR------DDLLGLPDGLLCLWLDR-------QPAATDLELLRTGFNDRLWLAVEL 154

Query: 189  HRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H  +D     Q++Q     H LPLVA+ +            D L A+ H   V++    R
Sbjct: 155  HHEHDDAHRLQLLQAFGERHRLPLVASGDVHMHVRRRRALQDTLTAIRHRCSVAEAGW-R 213

Query: 248  VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            + P  + +L+ R+ +  ++    E L  T+ IA RC F L+      PR +  E  D   
Sbjct: 214  LFPNGERHLRPRTALAQLYPR--ELLAETLRIAERCHFTLEQLQYTYPRELVPEGHD--- 268

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              ++ LR     G+  R   G       AQ  R++++ EL +I +  ++ YFL V D ++
Sbjct: 269  -PDSWLRVLVERGIPWRWKNGIEP----AQ--RKQIEHELALIRQKNYASYFLTVQDIVR 321

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S   + L +T+IDP R +LLFERF++ +R   PD DIDF  +
Sbjct: 322  FARSKDI-LCQGRGSAANSAVCFVLGVTEIDPARSNLLFERFISAERDEPPDIDIDFEHE 380

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV++YV N+YG ER A      S + ++A+RDV RAL +P  QV+ L   + +   H
Sbjct: 381  RREEVLQYVFNRYGRERAALTAVAISYRGRSAIRDVARALGLPMDQVNELGAAMDHWGGH 440

Query: 486  ---PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               P +L+    D          P + RLL ++ +L    RH S H  G VI + PLS L
Sbjct: 441  VPLPETLRERGFDPE-------TPLMRRLLSLTAELIDFPRHLSQHPGGFVISEHPLSTL 493

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-LSLI 601
            VP+     +D  V Q++   ++  GL+K D L L  LT ++K L  L Q G+    +  I
Sbjct: 494  VPVENAAMADRTVIQWDKDDLDATGLMKVDCLALGMLTAIRKCLAMLQQHGLHSGRMDAI 553

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
              DD  TY +++   T+G+FQ+ES      L  MQP    D++  V++ RPGPI   +V+
Sbjct: 554  EDDDTPTYDMISAADTIGVFQIESRAQMAMLPRMQPRNFYDLVIEVAIVRPGPIQGDMVH 613

Query: 662  NN-------RKNGKEKIVSI-HPLIDPMLK----ETQGVIIYQEQVMQIAQLLSGYSLSE 709
                     R+ G E + ++  PL  P L+     T GV ++QEQVMQ+A   +GY+  E
Sbjct: 614  PYLERRRLLREQGPEALDNLEEPLYPPQLERVFARTLGVPLFQEQVMQLAVDAAGYTPGE 673

Query: 710  ADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD LRR+M   K +  ++  +E+ ++G  KNG S+    ++FE +  F DYGF +SHAA+
Sbjct: 674  ADALRRSMAAWKRRGGLEPHREKLLAGMLKNGFSREYGEHLFEQIKGFGDYGFPESHAAS 733

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV---NTPC 825
            +A+++Y + W+K H+P  F A+ +  +        +  QDAR+  I+++P  V   +  C
Sbjct: 734  FALLTYASCWLKCHHPAAFTASLINSQPLGFYSPDQLLQDARRHGIRVLPLDVRHSDWDC 793

Query: 826  -VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
             +D   G   I   L  I G      + IM   A +PFD + D C R     L+RR    
Sbjct: 794  TLDISKGATAIRLGLRLIDGCNEPAVQAIMRERARRPFDDVGDLCQRT---ALDRRQQGL 850

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  AGA           L+ L   +  A+W      N+   +F H + T   ++ L   S
Sbjct: 851  LADAGA-----------LRGLSGHRHRARWDISGVENR-LPLFDHARATAEARVPLPLPS 898

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + + R  G     HP+   +  LR  G     +  A   G  +R+A +V  +
Sbjct: 899  AWED---MQADYRSTGTTLGRHPISFLRAQLRTRGCLDAAQLAAHGHGRRVRIAGLVRMR 955

Query: 1005 QQKKTRKGSRIGWVTF 1020
            Q+ +T  G     VTF
Sbjct: 956  QRPQTASG-----VTF 966


>gi|291301059|ref|YP_003512337.1| DNA polymerase III subunit alpha [Stackebrandtia nassauensis DSM
           44728]
 gi|290570279|gb|ADD43244.1| DNA polymerase III, alpha subunit [Stackebrandtia nassauensis DSM
           44728]
          Length = 1073

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 287/922 (31%), Positives = 439/922 (47%), Gaps = 70/922 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +  L  HS++S L+GA S  +++ +        +AITD + L+ A+ F+Q A   G+  
Sbjct: 29  GYAELHAHSNFSFLDGASSPEDLVAEALRLGLSGLAITDHDGLYGAVRFAQAAKGTGLAT 88

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           + G +L I +        +   P P+   +++L   AEGY +L   +   +L   G Q  
Sbjct: 89  VYGAELSIGLTGE-----RAGVPDPSGTHLLVLARGAEGYAKLSAAIGNAHL--AGGQKG 141

Query: 130 RICLSWLQEIGTE---GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
                 L+ +       +++LTG   GP+ RA        A   L    +LFG D +YV 
Sbjct: 142 LPDYGSLEGVAARLRGHVVVLTGCRKGPVRRALDAGGVDAARVELERLVELFGRDGVYVE 201

Query: 186 LQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           L  H+ + D  R   +  LA    L +VATNN  +     +    V  AV  +  + + D
Sbjct: 202 LTDHQAFTDGDRNEALADLASELGLSVVATNNVHYARSSRHRLSQVAAAVRANMPLDELD 261

Query: 245 R--PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              P   P   L +  EMV  F+    A+ +++ +AR  +F L + AP LP F      D
Sbjct: 262 GWLP-AAPTARLCSPDEMVERFAPFGGAVASSLRLARELAFDLDLVAPALPPFPVPAGHD 320

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               E++ LR+   AG   R   G +       D  ++LD EL+VI R+ F+GYFLIV D
Sbjct: 321 ----EDSWLRHLVQAGAAERY--GPLGS---RSDVVRQLDHELDVIKRLGFAGYFLIVHD 371

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            + + ++  I V  GRGS A SV  + L IT  DP+ F LLFERFL+P R   PD D+D 
Sbjct: 372 IVDYCRREGILV-QGRGSAANSVVCFTLGITAADPIAFKLLFERFLSPAREGPPDIDLDI 430

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              RR+ VI+YV + YG    AQ+    + + ++A+RD   AL     QVD      P  
Sbjct: 431 EARRREAVIQYVYDTYGRTYAAQVANVITYRRRSAIRDSAAALGYSPGQVDAWIAASPRR 490

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              P   +  AD   +                + +L G  RH   H+ G+VI DRP+  +
Sbjct: 491 -GGPALTELPADVGTY----------------AGQLLGAPRHLGIHSGGMVICDRPIIDV 533

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLI 601
           VP+         V Q++      AGL+K D LGL  LT L+++ D   A   V VDL+ +
Sbjct: 534 VPVEHARMDKRTVLQWDKDDCADAGLVKIDLLGLGMLTALREARDVANAHYDVPVDLAAL 593

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
             DD E Y ++     +G FQ+ES    Q    ++P  + D+   ++L RPGPI    V 
Sbjct: 594 TPDDAEVYAMVHKGDAIGTFQIESRAQLQLAPRLRPANLHDLAVQIALVRPGPIQGGAVH 653

Query: 661 -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG- 718
            Y  R++G E +V  H L  P L+++ GV ++QEQ+MQ+A    G+S ++AD LR+AMG 
Sbjct: 654 PYLRRRDGLEPVVYPHRLAQPALEKSLGVPLFQEQMMQLAVDCGGFSPADADELRQAMGA 713

Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           K+  E M + K+RF +GA+ N I      +++  +  F+ YGF +SHA ++A I+Y + +
Sbjct: 714 KRSAERMHRLKDRFYAGAAANDIPHATIDDLWSRMEAFSGYGFPESHAISFAYIAYASCY 773

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN---------------- 822
           +K +YP  FL   +  +      I     DAR+  ++I P  +N                
Sbjct: 774 LKRYYPAAFLTGLIRAQPMGFYSINTLIADARRHGVRIHPVHINHSHATTTLDGHGTPAP 833

Query: 823 --TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
              P   +  G   +   L  + G+  T A  I   +  +P+ S+ D   R     L   
Sbjct: 834 ADAPARQWGSGGPAVRLGLNQVHGISDTVAERI---AVGQPYTSITDLARRA---GLTET 887

Query: 881 VLESLVFAGALDCFGYSRMQLL 902
            LE+L  AGAL   G +R Q L
Sbjct: 888 HLENLATAGALTALGPTRRQAL 909


>gi|218780427|ref|YP_002431745.1| DNA polymerase III, alpha subunit [Desulfatibacillum alkenivorans
           AK-01]
 gi|218761811|gb|ACL04277.1| DNA polymerase III, alpha subunit [Desulfatibacillum alkenivorans
           AK-01]
          Length = 880

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 286/896 (31%), Positives = 448/896 (50%), Gaps = 62/896 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL VHS +S + G      +  K       A A+TD N ++ A+ F   A   G+  +
Sbjct: 2   FAHLHVHSGFSFMYGTFLPEALAAKAKEAGFNAAALTDKNGVYGAVRFCAAAEKLGVHAV 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG QL I+ +D+L                VLL  + +GY  L  L++  +  + G +   
Sbjct: 62  IGTQLTIEGRDDL----------------VLLAKSPKGYNNLCRLITLAH--EYGPRDQP 103

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR--------LLTFKKLFG-DR 181
            C      + +  ++ LTGG  G      FF   + A+          +   +++FG + 
Sbjct: 104 ACPEKFLALHSRDIVCLTGGRDG-----RFFKLVEGADGTQYRRACGWVWRLQEIFGKEN 158

Query: 182 LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
           +YV +Q     YD      + ++A     PL ATN+ + L   D   H  L+ +  + V 
Sbjct: 159 VYVEIQNAGTPYDARIMHIMARVAEKAGAPLAATNDVVCLEPGDLPVHHALVDI-QNQVH 217

Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            +  + R + ++YLK++ EM  +     +ALENT  IA  C  +L          + K  
Sbjct: 218 HRACQARESREYYLKSQEEMAKLIP-YSQALENTGIIAHECQAMLP---------LGKSS 267

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ--DYRQRLDFELNVIARMKFSGYFL 358
             +        +++A+A L  R    ++A+ ++    D  QRL+ EL  I R   SGYFL
Sbjct: 268 PPVFPVPPGMSQDQALAKLCYR----SLARRFNPLELDVLQRLEKELGHIRRRDLSGYFL 323

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           +V +   +AK   I  G  RGS AGS+    L +  ++PL   LLFERFLN  R+ MPD 
Sbjct: 324 LVKEIHSFAKARRI-RGTVRGSAAGSLVL-HLLLGGVNPLEHRLLFERFLNNGRLDMPDV 381

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DF   RRDE+  Y+  KY ++  A + T  + +A+ ALR +GRAL   Y ++DRL + 
Sbjct: 382 DMDFDSLRRDEIFEYLMEKYPNQ-AAMVATVSTFRARGALRSLGRALGYSYEKIDRLTQF 440

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
           +P+        +AI        + L     D LL +++K+ GL  + S H  G+V+    
Sbjct: 441 VPHFLRSHDIRKAIERMPELEGSPLLQE--DELLWLAEKISGLPHNLSVHLGGMVLTPGE 498

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
           +    P+ +  R  +PV QF+   +E  GL+K D LGL+  + +Q  ++ L ++GV++ L
Sbjct: 499 IFNWSPL-QTSRKGIPVVQFDKDDVEALGLVKLDILGLRMHSAIQFGVELLEKKGVRLCL 557

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             +P DD  T+ +L T  ++G+FQ+ES G RQ L  +QP   EDIIA +SL+RPGP+   
Sbjct: 558 DEVPLDDPATFRMLRTTDSVGVFQVESPGQRQLLGRLQPRHFEDIIAEISLFRPGPMSGA 617

Query: 659 VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
           +V  Y  R+N KE +   HP + P+LK T GV+++QEQ+++IA  ++G    E D +RR+
Sbjct: 618 MVEPYVLRRNNKEPVTYPHPDLRPILKSTFGVVLFQEQILEIAHDIAGMPYGEGDRMRRS 677

Query: 717 MGKKIKEEMDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
           + KK    + ++ +E F+ G  K G     A   F+L+A F  YGF K+HAA++A I+YQ
Sbjct: 678 LSKKAPRAVFREMEEAFVKGCLKKGYDNPTAQAFFDLVASFMGYGFCKAHAASFAHITYQ 737

Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
           +A++KTHYP+ F    +  E            +AR+  I ++ P VN   V +   +  I
Sbjct: 738 SAYLKTHYPLAFYFGILNAEHVGSYPHSVILNEARRMGIPVLQPHVNKSGVQYLEENGGI 797

Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              L  IK +G      I+       F S +DF  RV      R  LE    AGAL
Sbjct: 798 RIPLIRIKNIGPKYCEKIILEREKGLFLSADDFTKRVSLPAKARFSLEK---AGAL 850


>gi|223932493|ref|ZP_03624494.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
 gi|330833069|ref|YP_004401894.1| DNA polymerase III subunit alpha [Streptococcus suis ST3]
 gi|223898764|gb|EEF65124.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
 gi|329307292|gb|AEB81708.1| DNA polymerase III alpha subunit [Streptococcus suis ST3]
          Length = 1036

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 270/818 (33%), Positives = 436/818 (53%), Gaps = 52/818 (6%)

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEI 277
            F  EE  E+  VL A+  +  ++Q     +     L +   + ++FS+  P+A++N  ++
Sbjct: 160  FFEEEQLESLQVLHAIRDNIPLNQV--VDIDSRQKLLSADSLTNLFSNRFPQAVDNLRDL 217

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
                S+ L      LPRF             N  R  AV  L  R  QG   KG     Y
Sbjct: 218  VAGISYQLNTDLK-LPRF-------------NRDR-PAVEELYERSYQGLEEKGLTNSLY 262

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            ++RL+ EL++I +M F  YFLIV D +++ +     +G GRGS  GS+ AYAL IT IDP
Sbjct: 263  KERLEKELSIIHQMGFDDYFLIVWDLLRFGRSQGYYMGMGRGSAVGSLVAYALNITGIDP 322

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
            ++ +LLFERFLN +R SMPD DID     R + IRYV+++YG    AQI+T+ +  AK A
Sbjct: 323  VKHNLLFERFLNAERYSMPDIDIDIPDIHRADFIRYVRDRYGSTHAAQIVTYSTFGAKQA 382

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
            +RDV +    P  ++  + K I    +   + Q    ++ FR+   +     +   I+Q+
Sbjct: 383  IRDVFKRFGTPEYELSNITKKISFRDSLTSAYQR---NAAFRQIINSKIEYQKAFAIAQQ 439

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EG  R  S HAAGIV+ D  L+  +P+   +  D+ VTQ++   +E  GL+K DFLGL+
Sbjct: 440  IEGQPRQTSIHAAGIVMSDEDLTDTIPL--KIGDDMLVTQYDAHAVEANGLLKMDFLGLR 497

Query: 578  TLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT +QK  + + +R   ++D++ I  +D +T  L     T GIFQ E  G    L  ++
Sbjct: 498  NLTFVQKMAEGVRERYQQEIDIAKIDLEDKKTLELFAAGRTKGIFQFEQPGAISLLRRVK 557

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            P   EDI+A  SL RPG  D    +  RK+G+E +  + P I P+L+ T G+++YQEQVM
Sbjct: 558  PGRFEDIVATTSLNRPGASDYSDNFVKRKHGQETVDLLDPTIAPILQPTYGIMLYQEQVM 617

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            QIAQ+ +G++L +AD+LRRAM KK  +EM   +  F+ GA KNG ++  A  IF ++AKF
Sbjct: 618  QIAQVYAGFTLGKADLLRRAMSKKNAQEMQVMEAEFLQGALKNGHAEENAREIFGMVAKF 677

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A YGFN+SHA AY+ +++Q A+ K+HY   F    +            + +DA QF+ ++
Sbjct: 678  AGYGFNRSHAYAYSALAFQMAYFKSHYTDVFFDVMLN------HSSSAYIEDAMQFDFEV 731

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
               ++N      K   +++Y  L  +KG+    A  I++    +P+ S+EDF  R+    
Sbjct: 732  ARLTINNIPYHDKFDKSKVYLGLKTLKGLPKDLALWILD---HRPYKSVEDFILRLPDNF 788

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
              + +L  L+  G  D F  +R +++++LDN+  +A+ +           FA E  +++D
Sbjct: 789  KKKDLLIPLIQIGLFDDFVANRKKIIENLDNLFVFAEAI--------GTFFAEESYSWTD 840

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
               +E +S    S +F  EQ +LG   S HPL     I R+   + + +      GN   
Sbjct: 841  ---VEDYS---DSEKFMLEQELLGVGISPHPL---VNICRE-SKRSFTDLADLAVGNRAT 890

Query: 997  LAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
            +   + + +  +T+K G ++ ++  ++  +  +   FP
Sbjct: 891  VLVQIQAIRLIRTKKTGEQMAFLRVTDTKRTLDVTLFP 928



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 13/104 (12%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + Y+ ++  +++ N + +       A+ I D N+L++A  F +     G+QPIIG
Sbjct: 4   QLDTKTVYTFMDSMVTIENYVGRAKELGYHALGIMDKNSLYAAYSFMESCNKMGLQPIIG 63

Query: 73  CQLDIDMQDNLK-MTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
           C+LD  +Q+  + +T Q            L+  T  GY+ L+++
Sbjct: 64  CELDWKLQEGEQDVTTQ------------LIALTTRGYRNLLKI 95


>gi|169630782|ref|YP_001704431.1| error-prone DNA polymerase [Mycobacterium abscessus ATCC 19977]
 gi|169242749|emb|CAM63777.1| Error-prone DNA polymerase [Mycobacterium abscessus]
          Length = 1078

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 281/912 (30%), Positives = 457/912 (50%), Gaps = 60/912 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS++S L+GA     ++ + A     A+AITD +  +  + F++ A   G+  +
Sbjct: 42  YAELHAHSAFSFLDGASLPEEMVQEAARLDLKALAITDHDGFYGVVRFAEAAKELGLPTV 101

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG----K 126
            G +L +  Q N + +            +++L    EGY+RL   ++  +L        K
Sbjct: 102 FGAELSLGGQGNTEDSVH----------LLVLARGQEGYRRLSRQMAGAHLSGGTPKDRK 151

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
              R  L  L E       +LTG   G + RA        AE+ L      FG DR+ + 
Sbjct: 152 GKPRYDLDALTEAAGGHWHILTGCRKGHVRRALAGGGPVAAERALANLVDRFGADRVSIE 211

Query: 186 LQRHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE-AHDVLMAVAHSTVVSQ 242
           L RH   G D  R +++  LA    + ++AT  + F + E    A  +    A  ++   
Sbjct: 212 LNRHGHPGEDE-RNAELAALARGFGVGVIATTAAHFATPESGRLAMAMAAVRARKSLDDA 270

Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                     +L++  EM  +FS  PE +    E+   C+F L++ AP LP F      D
Sbjct: 271 AGWLDPVGGAHLRSGDEMARLFSHYPEVVTAAAELGEECAFDLRLIAPQLPPF------D 324

Query: 303 IQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
           +     E++ LR+ A+ G   R    A A+  +AQ     ++ EL +IA++ F GYFL+V
Sbjct: 325 VPSGHTEDSWLRHLALEGAARRYGPRAGAQKAYAQ-----IERELEIIAQLNFPGYFLVV 379

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            D  Q+ ++++I +  GRGS A S   YAL +T++DP+   LLFERFL+P R   PD DI
Sbjct: 380 HDITQFCRRSDI-LCQGRGSAANSAVCYALGVTNVDPVDNGLLFERFLSPARDGPPDIDI 438

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           D   D R++ I+YV NKYG E  AQ+    + + + A+RD+ +AL     Q D   K + 
Sbjct: 439 DIESDEREQAIQYVYNKYGREYAAQVANVITYRGRMAVRDMAKALGFAQGQQDAWSKQMG 498

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
           +          +AD      A   D    ++++++++++   RH   H+ G+VI DRPL+
Sbjct: 499 H-------WGGLAD------AAAVDGIPPQVIQLARQIKDFPRHMGIHSGGMVICDRPLA 545

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
            +VP+      +  V Q++       GL+KFD LGL  L+ L   +D + + +G+ VDL+
Sbjct: 546 DVVPVEWARMENRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYCIDLVREHKGIDVDLA 605

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            I   +   Y +L    ++G+FQ+ES      L  ++P C  D++  V+L RPGPI    
Sbjct: 606 HINLKEQAVYEMLARADSVGVFQVESRAQMATLPRLKPKCFYDLVVEVALIRPGPIQGGS 665

Query: 660 V--YNNRKNGKEK-IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
           V  Y  R N  +K     HP +   L +T GV ++QEQ+MQ+A  ++G+S +E+D LRRA
Sbjct: 666 VHPYIRRYNKIDKDWQHDHPSMAAALDKTLGVPLFQEQLMQLAVDVAGFSPAESDQLRRA 725

Query: 717 MG-KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           MG K+  E M++ + RF  G    +GI+  +A  I+E L  FA++GF +SHA ++A + +
Sbjct: 726 MGSKRSPERMERLRNRFYEGMRNLHGITGELADRIYEKLYAFANFGFPESHAQSFASLVF 785

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN- 833
            ++W K H+P  F AA +  +       +    DAR+  + +  P VN   + +   +N 
Sbjct: 786 YSSWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNA-SLSYATLENA 844

Query: 834 --RIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
              +   L A++ +G   A+ I+E    + PF SL D   R+   +L    +E+L   GA
Sbjct: 845 GLEVRIGLGAVRHIGDDLAQAIVEERKVRGPFVSLLDLTGRI---QLTTAQVEALATGGA 901

Query: 891 LDCFGYSRMQLL 902
           L CF  SR + L
Sbjct: 902 LGCFDMSRREAL 913


>gi|331703662|ref|YP_004400349.1| DNA polymerase III subunit alpha [Mycoplasma mycoides subsp. capri LC
            str. 95010]
 gi|328802217|emb|CBW54371.1| DNA polymerase III alpha subunit [Mycoplasma mycoides subsp. capri LC
            str. 95010]
          Length = 987

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 250/731 (34%), Positives = 401/731 (54%), Gaps = 37/731 (5%)

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            + V  L ++  Q  I      + Y  RL++EL VI +M FS YFLIV+D++ +AKKN+I 
Sbjct: 243  RQVCLLSLKKYQQKIKPNLDLKLYINRLNYELEVIKQMGFSDYFLIVSDYVNFAKKNDIL 302

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L ITDIDPL + LLFERFLNPDR ++PD D+DF  +RR+EV+ Y
Sbjct: 303  VGPGRGSAAGSLISYLLRITDIDPLEYDLLFERFLNPDRSNLPDIDLDFQDNRREEVLEY 362

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            +  KYG   V  I T+ ++  K A RDV R   +    V+++ K++  D           
Sbjct: 363  LFEKYGKYHVGMITTYQTIGYKMAWRDVCRVFNIDLLIVNKISKVL--DQYTNSDFLEFI 420

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
             +++       +     +     K+ GL R  STHAAGIV+ D  L +LVP+ +   + +
Sbjct: 421  KENKLLNDYFQNDLFKEIFITMHKIVGLPRQTSTHAAGIVLTDCDLRELVPI-KIGFNGI 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ--KSLDFLAQRGVKVDLSLIPFDDHETYHL 611
              TQF+M +++  GLIK D LGL+ LT +Q  K L +L Q  +K+ L+ I  +D + + L
Sbjct: 480  NQTQFDMNYLDALGLIKMDILGLRNLTTIQEIKHLIYLNQ-NLKISLNKIDLNDRKAFEL 538

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY-NNRKNGKEK 670
            L  K T GIFQLES GM   +  MQ D IE I    +LYRPGP + I +Y  N+K  K K
Sbjct: 539  LKNKQTSGIFQLESKGMTDLISKMQVDSIEQISIASALYRPGPQEMIPIYLENKKTNKFK 598

Query: 671  IV--SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            I+  S++ ++ P    T G+I+YQEQVMQ+   ++ +S ++AD++RRAM KK  + M   
Sbjct: 599  IIDKSVYEILKP----TYGIIVYQEQVMQMLNKVANFSYAKADIIRRAMSKKNNKVMQSM 654

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K  FI+ A KN  S   A  I+  + KF++YGFNKSH+ +Y+ ISY  A+ K H+  EF 
Sbjct: 655  KLEFINSAIKNNFSYNKANLIWNWIEKFSNYGFNKSHSISYSYISYWLAYFKAHFTTEFY 714

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             + +   + N  K +++ ++   + I++  PSV     ++++ + +IY  L  IK +G  
Sbjct: 715  TSLLDQNIGNEIKTQQYIKELYDYKIKVNKPSVINSNFNYQIINKQIYMPLTCIKSIGYE 774

Query: 849  TARHIMEASADKP--FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
              + I  A ++    +  + +F   +  +K+N  VL++L+ AGALD F Y++  ++++LD
Sbjct: 775  VVKKINLAKSENENMYLDIHNFILAMIKQKINVNVLQTLIKAGALDIFNYNKKTMIENLD 834

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             +   A     N   +  NI   E      KI L  +      +    E+ + GF+   +
Sbjct: 835  LLISQA-----NAYKQVNNILDDE------KINLIIYDEYEDEILASFEKELYGFFIDQN 883

Query: 967  PLDVYKPILRKMGIKGYEES---VATIRGNNIRLA-AMVVSKQQKKTRKGSRIGWVTFSE 1022
            P       + K+    +  +   ++ +  N +++    ++  ++ K +  +++ +VT  +
Sbjct: 884  P-------ILKLKTNNFNLNLIDISKLEYNKVQVVLGYILKIKEIKDKNNNKMAFVTVFD 936

Query: 1023 PAKEYEANFFP 1033
               E E   F 
Sbjct: 937  NTSELELTIFS 947


>gi|302023511|ref|ZP_07248722.1| DNA polymerase III DnaE [Streptococcus suis 05HAS68]
          Length = 1036

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 270/818 (33%), Positives = 436/818 (53%), Gaps = 52/818 (6%)

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEI 277
            F  EE  E+  VL A+  +  ++Q     +     L +   + ++FS+  P+A++N  ++
Sbjct: 160  FFEEEQLESLQVLHAIRDNIPLNQV--VDIDSRQKLLSADSLTNLFSNRFPQAVDNLRDL 217

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
                S+ L      LPRF             N  R  AV  L  R  QG   KG     Y
Sbjct: 218  VAGISYQLNTDLK-LPRF-------------NRDR-PAVEELYERSYQGLEEKGLTNSLY 262

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            ++RL+ EL++I +M F  YFLIV D +++ +     +G GRGS  GS+ AYAL IT IDP
Sbjct: 263  KERLEKELSIIHQMGFDDYFLIVWDLLRFGRSQGYYMGMGRGSAVGSLVAYALNITGIDP 322

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
            ++ +LLFERFLN +R SMPD DID     R + IRYV+++YG    AQI+T+ +  AK A
Sbjct: 323  VKHNLLFERFLNAERYSMPDIDIDIPDIHRADFIRYVRDRYGSTHAAQIVTYSTFGAKQA 382

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
            +RDV +    P  ++  + K I    +   + Q    ++ FR+   +     +   I+Q+
Sbjct: 383  IRDVFKRFGTPEYELSNITKKISFRDSLTSAYQR---NAAFRQIINSKIEYQKAFAIAQQ 439

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EG  R  S HAAGIV+ D  L+  +P+   +  D+ VTQ++   +E  GL+K DFLGL+
Sbjct: 440  IEGQPRQTSIHAAGIVMSDEDLTDTIPL--KIGDDMLVTQYDAHAVEANGLLKMDFLGLR 497

Query: 578  TLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT +QK  + + +R   ++D++ I  +D +T  L     T GIFQ E  G    L  ++
Sbjct: 498  NLTFVQKMAEGVRERYQQEIDIAKIDLEDKKTLELFAAGRTKGIFQFEQPGAISLLRRVK 557

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            P   EDI+A  SL RPG  D    +  RK+G+E +  + P I P+L+ T G+++YQEQVM
Sbjct: 558  PGRFEDIVATTSLNRPGASDYSDNFVKRKHGQETVDLLDPTIAPILQPTYGIMLYQEQVM 617

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            QIAQ+ +G++L +AD+LRRAM KK  +EM   +  F+ GA KNG ++  A  IF ++AKF
Sbjct: 618  QIAQVYAGFTLGKADLLRRAMSKKNAQEMQVMEAEFLQGALKNGHAEENAREIFGMVAKF 677

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A YGFN+SHA AY+ +++Q A+ K+HY   F    +            + +DA QF+ ++
Sbjct: 678  AGYGFNRSHAYAYSALAFQMAYFKSHYTDVFFDVMLN------HSSGAYIEDAMQFDFEV 731

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
               ++N      K   +++Y  L  +KG+    A  I++    +P+ S+EDF  R+    
Sbjct: 732  ARLTINNIPYHDKFDKSKVYLGLKTLKGLPKDLALWILD---HRPYKSVEDFILRLPDNF 788

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
              + +L  L+  G  D F  +R +++++LDN+  +A+ +           FA E  +++D
Sbjct: 789  KKKDLLIPLIQIGLFDDFVANRKKIIENLDNLFVFAEAI--------GTFFAEESYSWTD 840

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
               +E +S    S +F  EQ +LG   S HPL     I R+   + + +      GN   
Sbjct: 841  ---VEDYS---DSEKFMLEQELLGVGISPHPL---VNICRE-SKRSFTDLADLAVGNRAT 890

Query: 997  LAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
            +   + + +  +T+K G ++ ++  ++  +  +   FP
Sbjct: 891  VLVQIQAIRLIRTKKTGEQMAFLRVTDTKRTLDVTLFP 928



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 13/104 (12%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + Y+ ++  +++ N + +       A+ I D N+L++A  F +     G+QPIIG
Sbjct: 4   QLDTKTVYTFMDSMVTIENYVGRAKELGYHALGIMDKNSLYAAYSFMESCNKMGLQPIIG 63

Query: 73  CQLDIDMQDNLK-MTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
           C+LD  +Q+  + +T Q            L+  T  GY+ L+++
Sbjct: 64  CELDWKLQEGEQDVTTQ------------LIALTTRGYRNLLKI 95


>gi|104781527|ref|YP_608025.1| error-prone DNA polymerase [Pseudomonas entomophila L48]
 gi|95110514|emb|CAK15222.1| probable DNA polymerase III, alpha subunit [Pseudomonas entomophila
            L48]
          Length = 1026

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 306/1031 (29%), Positives = 476/1031 (46%), Gaps = 95/1031 (9%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  L   S++S   GA S + +  +       A+AITD   L   +   Q A A  +
Sbjct: 3    TPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKAHEL 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + IIG ++ +         +QG       P +VLLV    GYQ L  L++R     + ++
Sbjct: 63   RLIIGSEVQV---------HQG-------PKLVLLVQDLHGYQNLCALITRAR--RRARK 104

Query: 128  SVRICLSWLQEIGTEGLIML-TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                 L    E   +GL+ L   G   P +   +              + LFG+RL++  
Sbjct: 105  GSYQLLGEDLEAHHQGLLALWVAGPDEPSESGPW-------------LRALFGERLWLAA 151

Query: 187  QRHRGYD-----RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVV 240
              HRG D      +  +Q ++L     +PLVA  +    +       D + A+ AH +V 
Sbjct: 152  HLHRGADDQARLAWLRAQGLRLG----VPLVACGDVHMHARGRRALQDCMTAIRAHCSVA 207

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                      + +L+   ++  ++      L+ T+ IAR+C+F L       PR +  E 
Sbjct: 208  EAGGLLFANGERHLRPLDQLRELYP--APLLDETLNIARQCTFELSQLKYRYPRELVPE- 264

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                    + LR     GL  R   G   K       R  LD EL +I  + +  YFL V
Sbjct: 265  ---GHSPASWLRALCEQGLPGRWPAGPSDK------VRAVLDKELALIEELGYESYFLTV 315

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +A++  I +  GRGS A SV  + L IT++DP+   LLFERFL+ +R   PD D+
Sbjct: 316  HDIVAFARRQRI-LCQGRGSAANSVVCFVLGITELDPMVHRLLFERFLSRERNEPPDIDV 374

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  DRR+EVI+YV ++YG  R A      S  A  A+RDV RAL +   QVD L K   
Sbjct: 375  DFEHDRREEVIQYVFSRYGRHRAALTAVVSSYHAAGAVRDVARALGLSADQVDALAKCCG 434

Query: 481  NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                       I DD R  EA      PS+ R+L ++ +L G  RH S H  G VI ++P
Sbjct: 435  R------WSDRIPDDQRLAEAGFDAQSPSLRRILVLAGELIGFPRHLSQHPGGFVISEQP 488

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD 597
            L QLVP+         V Q++   ++  GL+K D L L  L+ L++  D L   RG+++ 
Sbjct: 489  LDQLVPVENATMEARTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLLYRHRGIELT 548

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            L+ IP DD  TY ++    T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  
Sbjct: 549  LASIPPDDPATYAMIGRAETMGVFQIESRAQMAMLPRLRPENFYDLVIEVAIVRPGPIQG 608

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D +  Y  R+  +E +      +  + + T GV ++QEQVM++A + + Y+  EAD LRR
Sbjct: 609  DMVHPYLRRRLRQEPVTYPSEKLREVFQRTLGVPLFQEQVMELAMVAADYTPGEADQLRR 668

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +M   K    ++  ++R +SG  +NG     A  IFE +  F  YGF +SHAA++A++ Y
Sbjct: 669  SMAAWKRHGGLEPHRQRLVSGMLRNGYELAFAERIFEQIKGFGSYGFPESHAASFALLCY 728

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---- 830
             ++W+K H P  F  A +           +  Q+AR+  I++ P  V     D  +    
Sbjct: 729  ASSWLKCHQPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVLHSAWDCTLEPVG 788

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             G+  I   L  ++G   T +R + +A A +P+  +ED C R     L+ R    L  AG
Sbjct: 789  EGELAIRLGLRQVRGFSETDSRRLEQARAQRPWRDVEDLCLRAG---LDSRARGRLADAG 845

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL     +R Q           A+W +         +FA  +      + L   +V    
Sbjct: 846  ALRALAGNRHQ-----------ARW-QVAAVQAQLPLFAQVEPAPEPVVALPAPTVTQD- 892

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 +   LG     HPL + +  LR +G +   E      G+NI +A +VV +Q+ +T
Sbjct: 893  --LHADYDTLGTTLGPHPLSLLRSRLRALGCRSAGELAGVEDGDNIAVAGLVVGRQRPQT 950

Query: 1010 RKGSRIGWVTF 1020
              G     VTF
Sbjct: 951  ASG-----VTF 956


>gi|256384031|gb|ACU78601.1| DNA polymerase III, alpha subunit subfamily, putative [Mycoplasma
            mycoides subsp. capri str. GM12]
 gi|256384863|gb|ACU79432.1| DNA polymerase III, alpha subunit subfamily, putative [Mycoplasma
            mycoides subsp. capri str. GM12]
 gi|296455849|gb|ADH22084.1| DNA polymerase III, alpha subunit subfamily, putative [synthetic
            Mycoplasma mycoides JCVI-syn1.0]
          Length = 987

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 249/731 (34%), Positives = 401/731 (54%), Gaps = 37/731 (5%)

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            + V  L ++  Q  I      + Y  RL++EL +I +M FS YFLIV+D++ +AKKN+I 
Sbjct: 243  RQVCLLSLKKYQQKIKPNLDLKLYINRLNYELEIIKQMGFSDYFLIVSDYVNFAKKNDIL 302

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L ITDIDPL + LLFERFLNPDR ++PD D+DF  +RR+EV+ Y
Sbjct: 303  VGPGRGSAAGSLISYLLRITDIDPLEYDLLFERFLNPDRSNLPDIDLDFQDNRREEVLEY 362

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            +  KYG   V  I T+ ++  K A RDV R   +    V+++ K++  D           
Sbjct: 363  LFEKYGKYHVGMITTYQTIGYKMAWRDVCRVFNIDLLIVNKISKVL--DQYTNSDFLEFI 420

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
             +++       +     +     K+ GL R  STHAAGIV+ D  L +LVP+ +   + +
Sbjct: 421  KENKLLNDYFQNDLFKEIFITMHKIIGLPRQTSTHAAGIVLTDCDLRELVPI-KIGFNGI 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ--KSLDFLAQRGVKVDLSLIPFDDHETYHL 611
              TQF+M +++  GLIK D LGL+ LT +Q  K L +L Q  +K+ L+ I  +D + + L
Sbjct: 480  NQTQFDMNYLDALGLIKMDILGLRNLTTIQEIKHLIYLNQ-NLKISLNKIDLNDKKAFEL 538

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY-NNRKNGKEK 670
            L  K T GIFQLES GM   +  MQ D IE I    +LYRPGP + I +Y  N+K  K K
Sbjct: 539  LKNKQTSGIFQLESKGMSDLISKMQVDSIEQISIASALYRPGPQEMIPIYLENKKTNKFK 598

Query: 671  IV--SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            I+  S++ ++ P    T G+I+YQEQVMQ+   ++ +S ++AD++RRAM KK  + M   
Sbjct: 599  IIDKSVYEILKP----TYGIIVYQEQVMQMLNKVANFSYAKADIIRRAMSKKNNKVMQSM 654

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K  FI+ A KN  S   A  I+  + KF++YGFNKSH+ +Y+ ISY  A+ K H+  EF 
Sbjct: 655  KLEFINSAIKNNFSYNKANLIWNWIEKFSNYGFNKSHSISYSYISYWLAYFKAHFTTEFY 714

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             + +   + N  K +++ ++   + I++  PSV     ++++ + +IY  L  IK +G  
Sbjct: 715  TSLLDQNIGNEIKTQQYIKELYDYKIKVNKPSVINSNFNYQIINKQIYMPLTCIKSIGYE 774

Query: 849  TARHIMEASADKP--FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
              + I  A ++    +  + +F   +  +K+N  VL++L+ AGALD F Y++  ++++LD
Sbjct: 775  VVKKINLAKSENENMYLDIHNFILAMIKQKINVNVLQTLIKAGALDIFNYNKKTMIENLD 834

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             +   A     N   +  NI   E      KI L  +      +    E+ + GF+   +
Sbjct: 835  LLISQA-----NAYKQVNNILDDE------KINLIIYDEYEDEILASFEKELYGFFIDQN 883

Query: 967  PLDVYKPILRKMGIKGYEES---VATIRGNNIR-LAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            P       + K+    +  +   ++ +  N ++ +   ++  ++ K +  +++ +VT  +
Sbjct: 884  P-------ILKLKTNNFNLNLIDISKLEYNKVQVILGYILKIKEIKDKNNNKMAFVTVFD 936

Query: 1023 PAKEYEANFFP 1033
               E E   F 
Sbjct: 937  NTSELELTIFS 947


>gi|117928203|ref|YP_872754.1| error-prone DNA polymerase [Acidothermus cellulolyticus 11B]
 gi|117648666|gb|ABK52768.1| error-prone DNA polymerase, DnaE-like protein [Acidothermus
            cellulolyticus 11B]
          Length = 1090

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 295/1023 (28%), Positives = 485/1023 (47%), Gaps = 77/1023 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++S L+GA     ++++ A      +A+TD +  +  + F++ A   G++ +
Sbjct: 56   YAELHCHSNFSFLDGASHPEELVEEAARLGLETLALTDHDGFYGVVRFAEAAAELGVRTV 115

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L + +     +  +     P    +++L    EGY+RL   +S  +L   GK   +
Sbjct: 116  FGAELSLSL-----VEPRAGAVDPDAVHLLVLARDPEGYRRLAVAMSAAHLRGGGKGRPQ 170

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
               + L        ++LTG   G + RA        A + +    ++FG + + V L   
Sbjct: 171  YDETELAHTAGGHWLILTGCRKGRVRRALAAEGPDGAVREIDRLVEMFGRENVAVELTDD 230

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247
             +  D      +   A    LP+VAT N+ + + +       L AV     + +      
Sbjct: 231  GQPLDSAANDVLAAAAVRCGLPVVATTNAHYATPDRGRLAAALAAVRARKSLDEIAGWLP 290

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              P  +L++  EM   F+  P A+ N   +   C+F +++ AP LP F           E
Sbjct: 291  AAPVRHLRSGVEMAQRFARYPGAVANAARLGAACAFDVRLIAPRLPDFPVPP----GHTE 346

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR  A+ G     A       +   D  ++LD+EL+VI ++ F GYFL+V + +++ 
Sbjct: 347  MSYLRELAMRG-----AAEKYGPPHQRPDVYRQLDYELDVIEQLGFPGYFLVVWEIVEFC 401

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A SV  Y L IT  DP+ F LLFERFL+P+R   PD D+D    RR
Sbjct: 402  RSRGI-LCQGRGSAANSVVCYVLGITKADPIAFRLLFERFLSPERDGPPDIDVDIESGRR 460

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+YV ++YG ER AQ+ T  + + ++A+RD+ RAL     Q D   K          
Sbjct: 461  EEVIQYVYSRYGRERAAQVATVITYRPRSAVRDMARALGYSPGQQDAWSK---------- 510

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             L    +  R  EA    P  D ++ +++++ G  RH   H+ G+VI DRP++++ P+  
Sbjct: 511  QLDRYGEIPRGSEADHDVP--DDVVHLARQVLGFPRHLGIHSGGMVICDRPVAEVCPVEW 568

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDH 606
                   V Q++     + G++KFD LGL  L+ L++  D +    GV++ L  IP +D 
Sbjct: 569  ARMPGRSVLQWDKDDCARIGVVKFDLLGLGMLSALRECFDLIETYHGVRLSLETIPPEDP 628

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
              Y +L    ++G+FQ+ES      L  +QP    D++  V++ RPGPI    V+    R
Sbjct: 629  AVYDMLCAADSVGVFQVESRAQMATLPRLQPRNFYDLVTEVAIIRPGPIQGGSVHPFIRR 688

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKE 723
            + G+E +   HPL+   L+ T GV ++QEQ+MQ+A  ++G + +EAD LR+AMG K+  E
Sbjct: 689  RRGREPVRYAHPLLRHSLERTYGVPLFQEQIMQMAIDVAGLTPAEADHLRQAMGAKRSVE 748

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M++ K +  +G ++NGI+  +A  I+E L  FA +GF +SHA ++A + Y +AW+K +Y
Sbjct: 749  RMERLKAKLYAGMARNGITGAVADEIYEKLQAFAHFGFPESHAISFAFLVYASAWLKKYY 808

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIYYSL 839
            P  F AA +          +    DAR+  + I  P V +      +    G   +   L
Sbjct: 809  PAAFCAALLNAAPLGFYSPQTVVADARRHGVVIRRPCVASSATKTILEPMDGGWAVRLGL 868

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            + +KGV   TA  I+   A +P+  + D   R +   L+   LE+L  AGA +CFG  R 
Sbjct: 869  SLVKGVSAETADRIV---ARRPYRDMADLARRCE---LSVTHLEALAAAGACECFGLDRR 922

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENE 955
            Q L           W+  +                     LE F VE +  R     E E
Sbjct: 923  QAL-----------WLAGSAAETRPG-------------QLEGFGVEATPPRLPPMTEME 958

Query: 956  QRVLGFYFSGHPLDVYKPI-----LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
              V    F G   DVY        L +MG+    +       + + +  +V   Q+  T 
Sbjct: 959  TTVTDLRFLGISPDVYPTAHVRDQLTEMGVVPAAQLHRVAPDSRVLVGGVVTHWQRPATA 1018

Query: 1011 KGS 1013
            +G+
Sbjct: 1019 RGT 1021


>gi|300782746|ref|YP_003763037.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32]
 gi|299792260|gb|ADJ42635.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32]
          Length = 1103

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 281/911 (30%), Positives = 454/911 (49%), Gaps = 47/911 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS++S L+GA     ++++ A  +  AIA+TD + ++  + F++ A   G+  +
Sbjct: 61  YAELHCHSNFSFLDGASHPEELVEEAARLELDAIALTDHDGMYGVVRFAEAARELGVDTV 120

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129
            G +L   ++     + Q   P P    ++LL    +GY+ L   ++   +  Q  K   
Sbjct: 121 FGTELSFGLR-----SPQNGVPDPEGEHLLLLARGDQGYRALCRAITAGQIHHQAEKGRP 175

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
              L  + E      ++LTG   G +  A   +    A ++L      FG D +YV L  
Sbjct: 176 SYDLGAVAEEVAGQCVVLTGCRKGAVRSALVAHGPAAAAEKLKELVDRFGRDNVYVELTD 235

Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRP 246
           HR   D      + QLA    LP VAT  + +   E     D L A+ A   +   +   
Sbjct: 236 HRQPLDSTHNDLLTQLAGELGLPTVATTAAHYARPERAPLADALAAIRARRGIDELEGWL 295

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +L++ +EM ++F   P A+  +  +   C+F L++ AP LP F   E       
Sbjct: 296 PAAGTAFLRSGAEMDALFRRYPGAVRRSALLGMECAFPLKLIAPELPPFDVPEG----YT 351

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
           E   LR     G E R  QG      H +  ++++  EL +I  + F GYFLIV D +++
Sbjct: 352 ETTYLRELTKEGAEERF-QGKP----HEEQAKEQIKHELAIIEELGFPGYFLIVWDIVRF 406

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            ++++I +  GRGS A S   YAL IT +D + + LLFERFL PDR   PD D+D   DR
Sbjct: 407 CREHDI-LCQGRGSAANSAVCYALGITKVDSVAYELLFERFLAPDRDGYPDIDLDIESDR 465

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+E I+YV  K+G  R+AQ+    + +A++A+RD  RAL     Q D   K I       
Sbjct: 466 REEAIQYVFEKHGRLRIAQVANVITYRARSAVRDAARALGYSPGQQDAWSKQIDR----W 521

Query: 487 VSLQAIADDSRFREARLADPSV-DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            SLQ    D         D  + D +L+++  LE   RH   H+ G+V+   P+SQ+VP+
Sbjct: 522 GSLQNTEKDH--------DHDIPDEVLQLAFALEDFPRHLGIHSGGMVMCAEPVSQVVPV 573

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
                +D  V Q+  +    AGL+KFD LGL  L+ L   +D +A+ +  +VDL+ +   
Sbjct: 574 EWARMADRSVIQWEKEDCAAAGLVKFDLLGLGMLSALHYMIDLVAEYKDEQVDLAELDLA 633

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
           D + Y +L     +G+FQ+ES      L  +QP    D+   V+L RPGPI    V  Y 
Sbjct: 634 DEKIYDMLCRADAIGVFQVESRAQLATLPRLQPREFYDLAVEVALIRPGPIQGGSVHPYI 693

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKI 721
            RK G+E+    HPL++  L +T+GV ++QEQ+MQIA  ++ ++ +EAD LR AMG K+ 
Sbjct: 694 RRKQGREEWTYDHPLLERALHKTKGVPLFQEQMMQIALDVANFTAAEADQLRHAMGSKRS 753

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             +MD  ++RF+ GA+ NG+   +A  IF  L  FA++GF +SHA ++A + + +A+ K 
Sbjct: 754 DRKMDLLRQRFLEGAAANGVDDELAQKIFLKLKAFANFGFPESHALSFAHLVFSSAYFKF 813

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT--PCVDFKVGDNR----- 834
           ++P  FLA  +  +       +    DAR+  + +  P +N   P    +   ++     
Sbjct: 814 YHPDAFLAGLLRAQPMGFYSPQSLVADARRHGVTVHGPDINRSLPHATLEALPDKGKLHA 873

Query: 835 IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
           +   L+ ++ +G   A+ I+ E + +  +  + D   RV   +L    +E+L  AGA   
Sbjct: 874 VRTGLSTVRKIGEDLAKRIVAERAENGDYRDMADVARRV---RLTTPQIEALATAGAFAG 930

Query: 894 FGYSRMQLLQS 904
           FG  R Q L +
Sbjct: 931 FGGDRRQALWT 941


>gi|254416531|ref|ZP_05030283.1| DNA polymerase III, alpha subunit subfamily, putative [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176735|gb|EDX71747.1| DNA polymerase III, alpha subunit subfamily, putative [Microcoleus
           chthonoplastes PCC 7420]
          Length = 835

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/520 (41%), Positives = 322/520 (61%), Gaps = 40/520 (7%)

Query: 247 RVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCSFILQVHAPILPRFIEKEC 300
           R +   YLK+  EM  +F D LP     EA+ NT+E+A +      +  P +P +   + 
Sbjct: 2   RYSGTEYLKSAEEMAQLFRDHLPDEVIQEAIANTLEVADKVKRYDIMGEPRIPNYPVPKG 61

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                  ++ L      GL  R+  G  ++      Y++RL++EL ++ +M FS YFL+V
Sbjct: 62  ----HSADSYLEEVTWDGLLERM--GCRSRSDIDLVYKERLEYELKMMQQMGFSTYFLVV 115

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            D+I++A+   IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP+R SMPD D 
Sbjct: 116 WDYIKYARDQKIPVGPGRGSAAGSLVAYSLKITNIDPVHHGLLFERFLNPERKSMPDIDT 175

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DFC +RRDEVI YV +KYG +RVAQIITF  + +KA L+DV R L +PY + DR+ K+IP
Sbjct: 176 DFCIERRDEVIEYVTHKYGADRVAQIITFNRMTSKAVLKDVARVLNIPYGESDRMAKMIP 235

Query: 481 NDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                P  L+ +  +      FR+A L +P V R L+++ ++EG  +    HAAG+VI  
Sbjct: 236 VSRGKPTKLKVMISEKTPTPEFRDAYLNNPEVQRWLDMAIRIEGTNKTFGVHAAGVVISS 295

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595
            PL ++VP+  +    + +TQ+ M+ +E  GL+K DFLGLK LT +QK+ + + Q + + 
Sbjct: 296 EPLDEIVPLQVNNEGAV-ITQYFMEDLESLGLLKMDFLGLKNLTTIQKTAELIRQHQNIT 354

Query: 596 VDLSLIPFDDHETYHLLTT------------------KGTL-GIFQLESSGMRQALEGMQ 636
           +DL  +P D+ + + ++                    KG L GIFQLESSGMRQ +  ++
Sbjct: 355 LDLDQLPLDERKAFEIVAKGEIKKIPDDIKQTYTVLEKGELEGIFQLESSGMRQVVRELK 414

Query: 637 PDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
           P  IEDI ++++LYRPGP+D  ++  + NRK+GKEK+   HPL++P+LKET G + YQEQ
Sbjct: 415 PSSIEDISSILALYRPGPLDAGLIPKFINRKHGKEKVEYQHPLLEPILKETYGTLCYQEQ 474

Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
           +M++AQ L+GYSL +AD+LRR +     E +D +  R +S
Sbjct: 475 IMKMAQDLAGYSLGQADLLRRCLSGS-TEIIDAETGRLVS 513



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%)

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QE+V  ++   +   ++   +    MGKK   EM+K +E FI GA+KNG++K IA  +FE
Sbjct: 664 QEEVFDLSISQTHNLIANDFIAHNCMGKKKVAEMEKHREIFIDGAAKNGVAKRIAEELFE 723

Query: 752 LLAKFADY 759
            +  FA+Y
Sbjct: 724 QMILFAEY 731


>gi|54022882|ref|YP_117124.1| error-prone DNA polymerase [Nocardia farcinica IFM 10152]
 gi|71151830|sp|Q5Z1D1|DNAE2_NOCFA RecName: Full=Error-prone DNA polymerase
 gi|54014390|dbj|BAD55760.1| putative DNA polymerase III alpha subunit [Nocardia farcinica IFM
           10152]
          Length = 1146

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 283/933 (30%), Positives = 451/933 (48%), Gaps = 82/933 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS+YS L+GA     ++++       AIA+TD +  +  + F++ A   GI  +
Sbjct: 62  YAELHAHSAYSFLDGASQPEELVEEAVRLGLEAIALTDHDGFYGTVRFAEAAKEWGIATV 121

Query: 71  IGCQLDIDM-----QDNLKMTNQGKT-------------------------PFPTVPSIV 100
            G +L + +     + + +   +G+                          P P  P ++
Sbjct: 122 FGAELSLGVARPAPRRSARKAARGRGRAVRYAATPEFEHAAAPDSAPRTGEPDPPGPHLL 181

Query: 101 LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI----- 155
           +L    EGY+RL   ++  +L    K  +R  +  L         +LTG   G +     
Sbjct: 182 VLARGQEGYRRLSREIAAAHLAAGEKGVLRYDIDALTAAAGGHWHILTGCRKGHLRTALA 241

Query: 156 -DRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLV 212
            D A        AE  L    + FG DR+ V L  H    D  R + ++ LA    LP++
Sbjct: 242 DDLAAGETGLPRAEAALRDLVERFGADRVSVELTHHGVPADDERNALLIALADRVGLPVL 301

Query: 213 ATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
           AT  + F   E       L A+ A  ++             +L++ +EM  +F+  P+A+
Sbjct: 302 ATTGAHFAGPEQRRRAMALAAIRARRSLDEMAGWLAPAGGAHLRSGAEMARLFAACPDAV 361

Query: 272 ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
            N V ++R C+F L++ AP LP F   +  D    E + LR   + G   R         
Sbjct: 362 ANAVALSRECAFDLRLIAPQLPPFAVPDGHD----ENSWLRELVLRGAARRYGP------ 411

Query: 332 YHAQD--YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
            HA    YRQ L+ EL VIA + F GYFL+V D + + ++N I +  GRGS A S   +A
Sbjct: 412 PHANPPAYRQ-LEHELEVIATLGFPGYFLVVHDIVSFCERNGI-LCQGRGSAANSAVCFA 469

Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
           + IT++DP+   LLFERFL+P+R   PD DID   DRR+E I++V  +YG E  AQ+   
Sbjct: 470 IGITNVDPVANELLFERFLSPERDGPPDIDIDIESDRREEAIQHVYARYGREYAAQVANV 529

Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR--EARLADPS 507
            + + K+A+RD  +AL     Q D   K +                SR+    A      
Sbjct: 530 ITYRGKSAVRDAAKALGFSPGQQDAWSKQV----------------SRWTGVGAETGTDI 573

Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            +++L ++  LEGL RH   H+ G+VI DRP++ + P+     +   V Q++       G
Sbjct: 574 PEQVLRLAADLEGLPRHMGIHSGGMVICDRPIADVCPVEWARMAGRSVLQWDKDDCAAVG 633

Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
           L+KFD LGL  L+ L   +D + +  GV+V L  +   +   Y +L+   ++G+FQ+ES 
Sbjct: 634 LVKFDMLGLGMLSALHYMIDLVREHEGVEVRLHELDLKEPAVYEMLSRADSVGVFQVESR 693

Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE 684
                L  ++P    D++  V+L RPGPI    V  Y  R+NG E +   HP ++  L  
Sbjct: 694 AQMATLPRLRPREFYDLVVEVALIRPGPIQGGSVHPYIRRRNGTEPVTYDHPALENSLGR 753

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISG-ASKNGIS 742
           T GV ++QEQ+MQ+A  ++G++ +EAD LRRAMG K+  E M + KER   G A  +GI+
Sbjct: 754 TLGVPLFQEQLMQMAVDVAGFTAAEADQLRRAMGSKRSPERMRRLKERLYRGMAELHGIT 813

Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
             +A  I+E L  FA++GF +SH+ ++A + + +AW K H+P  F A  +  +       
Sbjct: 814 GEVADRIYEKLYAFANFGFPESHSQSFAALVFYSAWFKLHHPAAFCAGLLRAQPMGFYSP 873

Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIYYSLAAIKGVGTTTARHIMEASADK 860
           +    DAR+  + +  P VN    +  +  G   +   LA ++ +G+  A  I+ A  + 
Sbjct: 874 QSLVADARRHGVPVHGPDVNASLAEATLENGGREVRLGLAGVRHIGSELAERIVAARVEH 933

Query: 861 -PFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            P+ S+ D   RV+   L     E+L  AGA D
Sbjct: 934 GPYTSVLDLTGRVE---LTVAQAEALATAGAFD 963


>gi|262201696|ref|YP_003272904.1| DNA polymerase III subunit alpha [Gordonia bronchialis DSM 43247]
 gi|262085043|gb|ACY21011.1| DNA polymerase III, alpha subunit [Gordonia bronchialis DSM 43247]
          Length = 1090

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 296/1024 (28%), Positives = 483/1024 (47%), Gaps = 81/1024 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS+YS L+GA     ++ +       A++ITD +  +  + F++ A   G+  +
Sbjct: 67   YAELHAHSAYSFLDGASMPEEMVTEAQRLDLRALSITDHDGFYGIVRFAEAAREFGMPTV 126

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L   +  ++  T     P      +++L   +EGY+RL   ++  +++   K  +R
Sbjct: 127  FGSELS--LAHDVARTGHNDPPGE---HLLVLARDSEGYRRLSRTIADAHMVAGEKGLLR 181

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L        ++LTG   G + RA     +  AE  L      FG D + V L   
Sbjct: 182  YERESLSSAAGGHWLILTGCRKGAVRRALDRGGASAAEVALRDLVDRFGRDDVAVELTAS 241

Query: 190  RGY--DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ--KDR 245
             G   D  R + +  +A    +  VAT  + F           + AV   T +       
Sbjct: 242  -GLPDDDDRNAALAGVARLVGVATVATTGAHFAGPRRRRLAMAMAAVRARTDIDTIAGWM 300

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            P V   H L +  EM  +     +A++N V++A  C+F L + AP LP F      D+  
Sbjct: 301  PGVAGAH-LCSGDEMARLLPAHRDAIDNAVQLAADCAFELGLIAPQLPPF------DVPD 353

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    + +     R   G  A+  H Q YRQ ++ EL ++  + F GYFL+VAD + 
Sbjct: 354  GHTEITWLRELTMTRARRRYGTPAQ--HPQAYRQ-IEHELAIVETLNFPGYFLVVADIVD 410

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            + K N+I +  GRGS A S   YAL IT++DP+   LLFERFL+P+R   PD D+D   D
Sbjct: 411  FCKANDI-LCQGRGSAANSAVCYALGITNVDPVANKLLFERFLSPERDGPPDIDVDIESD 469

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+E I+YV  +YG +  AQ+    + + ++A+RD+ RAL     Q D            
Sbjct: 470  RREEAIQYVYRRYGRDYSAQVANVITYRGRSAVRDMARALGYGTGQQDAW---------- 519

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                           +RL D +   + +++ ++ G+ RH   H+ G+VI DRP++ + P 
Sbjct: 520  ---------------SRLPDEAPPEVADLAGEILGMPRHLGIHSGGMVICDRPIADVCPT 564

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
                  +  V Q++       GL+KFD LGL  L+ L  ++D +A+ +G+ VDL+ +   
Sbjct: 565  EWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGLHVDLAELDLS 624

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
            +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  Y 
Sbjct: 625  EPAVYEMLCRADSVGVFQVESRAQMATLPRLRPRKFYDLVVEVALIRPGPIQGGSVHPYI 684

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKI 721
             R++G+EK    HP +   L+ T GV ++QEQ+MQ+A  ++G+  + AD LRRAMG K+ 
Sbjct: 685  RRRHGQEKPTVEHPSMHKALERTLGVPLFQEQLMQLAVDVAGFDAAGADQLRRAMGSKRS 744

Query: 722  KEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             E M++ ++RF  G    +GI+  +A  IFE ++ FA++GF +SH+ ++A + + ++W K
Sbjct: 745  PERMERLRQRFYDGMRDLHGITGEVADRIFEKMSAFANFGFPESHSQSFASLVFYSSWFK 804

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT--PCVDFKVGDNRIYYS 838
             H+P  F AA +  +       +    DAR+  +++  P +N   P    +     +   
Sbjct: 805  LHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVRVHRPDINVSLPHATLENEGLEVRLG 864

Query: 839  LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L  ++GVGT  A  I+E   AD P+  + D   R     L  R LE L  AGA D FG S
Sbjct: 865  LDGVRGVGTEVAERIVERRDADGPYRDITDVSRRA---GLTTRELEGLAGAGAFDVFGVS 921

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVRFENEQ 956
            R Q L           W         ++       + +   TL   S VE ++     + 
Sbjct: 922  RRQAL-----------WEAGAAATVRDDQL--PLASAATTPTLPGLSDVELAA----TDA 964

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
               G   + +P    +P LR MG+   E  ++   G+ + +   V  +Q+  T  G    
Sbjct: 965  WATGITPTSYPTQFLRPRLRAMGVLAAETLLSVPDGSRVVVGGAVTHRQRPATASG---- 1020

Query: 1017 WVTF 1020
             VTF
Sbjct: 1021 -VTF 1023


>gi|262196390|ref|YP_003267599.1| DNA polymerase III subunit alpha [Haliangium ochraceum DSM 14365]
 gi|262079737|gb|ACY15706.1| DNA polymerase III, alpha subunit [Haliangium ochraceum DSM 14365]
          Length = 1074

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 306/1067 (28%), Positives = 485/1067 (45%), Gaps = 123/1067 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  L   S++S LEGA   + ++++  A    A+A++D + L+  +     A   G + 
Sbjct: 3    TYAPLWCKSNFSFLEGASHPDELIEEAHALGLRALALSDRDGLYGVVRAHVCAEKIGFKL 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR-MYLLDQGKQS 128
            I G Q+ +D                    IVLL     GY  L  L+++     D+G   
Sbjct: 63   IHGAQVSVDDGSQ----------------IVLLCRDRAGYANLCHLLTKGRRRSDKGSSQ 106

Query: 129  VRICLSWLQEIG-TEGLIMLTGGSSG-------------PID--RAFFFNSSQVAEKRLL 172
            V    SW +      GLI L GG+               P D  R           +   
Sbjct: 107  V----SWREVCAHAGGLIALWGGAGSLLTRPGENRPGGVPADIPRPLGGRPQSYLGRVAD 162

Query: 173  TFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
              ++ FGD LY    RHR  +    E+++   A    LP+ A    L+ S       DVL
Sbjct: 163  DLREAFGDALYALCARHREAEEVVTEARLRARAERFGLPVAAAVEVLYHSRARRPLQDVL 222

Query: 232  MAVAHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
              + H   +S   R  R   +H L +      +F D P A+  T++IA RC F L     
Sbjct: 223  TCLRHHVTLSTAGRYIRANDEHDLHSPQAFGILFDDDPAAVARTLDIAARCQFGL---GE 279

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            I  R+  +     +   E  LR  +  G   R       +G    D R +L  EL +I  
Sbjct: 280  IRYRYPSERLPSGKTTSE-WLRELSFEGARWRY------RGEVPADVRAQLTRELALIDE 332

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            + + GYFL + + +++ +   I +  GRGS A S   Y L IT +DP+R  LLFERFL+ 
Sbjct: 333  LDYGGYFLTMYEIVRFCRAQGI-LCQGRGSAANSAVCYCLDITAVDPVRMGLLFERFLSR 391

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R   PD D+D   DRR+EVI++V +KYG +  A +      + ++A+RDVG+ L +P +
Sbjct: 392  ERAEPPDIDLDIEHDRREEVIQHVYDKYGRDHAAMVAVVIRYRPRSAVRDVGKVLGIPAT 451

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
             +DR  KL+    +H   + A A +    +  L  P+   L  ++ ++    RH S H  
Sbjct: 452  SLDRCAKLL----SHYEGITAEALEQAGMDPHL--PAHQHLGRLASEILDFPRHLSIHPG 505

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G ++G  P+  LVP+     +   V Q++   +E  GL K D LGL  L  L +  D ++
Sbjct: 506  GFLLGHEPVHSLVPIENGAMAGRTVIQWDKNDLEDLGLFKVDLLGLGALNQLHRCFDLVS 565

Query: 591  Q-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            + RG+ + ++ IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+
Sbjct: 566  EHRGIDLSMATIPADDTATYDMICRADTVGVFQIESRAQMSMLPRLRPRYFYDLVIEVSI 625

Query: 650  YRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             RPGPI   +V  Y  R++G EKI   H  ++P+L+ T GV ++QEQVM++A + + Y+ 
Sbjct: 626  VRPGPITGGMVHPYLRRRHGLEKIEYPHESLEPVLERTLGVPLFQEQVMRLAMVAADYTP 685

Query: 708  SEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             EAD LRR M   +    +D+ +ER +S  ++ GI+   A  +FE +  F +YGF +SHA
Sbjct: 686  GEADQLRRDMAAWRRSGRIDQHRERLVSAMTRKGIAAEFAERVFEQIRGFGEYGFPESHA 745

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A++A+I+Y TA+M+ H+P E+  A +  +            DAR+  + + P  V     
Sbjct: 746  ASFALIAYATAYMRCHFPAEYACALLNAQPMGFYSPATIINDARRHGVSVRPIDVGASAW 805

Query: 827  DFKV--------------GDN---------RIYYS----LAAIKGVGTTTARHIMEASAD 859
            D  +              GD+         RI Y+    L  +KG+       I +A A 
Sbjct: 806  DCTLEPLPASQRRTTEENGDSGDSDSDAPARICYAIRMGLRYVKGLRRDAGTRIEDARAR 865

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             PF  L DF  R    +L+ R    L  +GAL  FG +R  +L           W     
Sbjct: 866  APFADLGDFVRRT---RLDERSHTRLAESGALAAFGRNRRDVL-----------W----- 906

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS------GHPLDVYKP 973
                  +  H++   SD ++L +     S  + +    +L  Y +      GHPL+  + 
Sbjct: 907  -----QVRGHQRAK-SDTLSLPQTGPAPSLAQLDQLDEILWDYQASLHSTRGHPLEPLRA 960

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             LR   I           G  +R A +V+ +Q+  T  G     VTF
Sbjct: 961  SLRAQNIADARSVQRMRHGQRLRYAGLVICRQRPPTAAG-----VTF 1002


>gi|284991707|ref|YP_003410261.1| DNA polymerase III subunit alpha [Geodermatophilus obscurus DSM
            43160]
 gi|284064952|gb|ADB75890.1| DNA polymerase III, alpha subunit [Geodermatophilus obscurus DSM
            43160]
          Length = 1268

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 328/1150 (28%), Positives = 536/1150 (46%), Gaps = 147/1150 (12%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            ++  FVHL V S YS+  GA    +++++ A     A+A+TD + L+ A++F+    AA 
Sbjct: 2    RADPFVHLHVASGYSMQYGANHPADLVERAAEHGMRALALTDRDGLYGAVKFALACRAAD 61

Query: 67   IQPIIGCQLDI------------------------------DMQDNLKMTNQGKTPF--- 93
            ++P+ G  L +                                 D+       ++P    
Sbjct: 62   VRPLFGVDLAVTPSVDTTVPPALAPVVGGAHSAQRARSRRPGAPDDAPGRAGRRSPARGG 121

Query: 94   ----PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
                P +P +  L     G++ L  L +  +L  +G +   +    L      GL+ L G
Sbjct: 122  ASVDPRLPRVTFLARDGAGWRSLCRLTTATHL--RGTRGEPVSSLALAAEHAPGLVALLG 179

Query: 150  GSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTH 207
              S P+ RA     + VA  RL  ++ +FG   L + +  HRG  DR R   +++ A   
Sbjct: 180  PDS-PVGRALAAGRADVASARLAAWRAVFGPGSLVLEVVHHRGRGDRSRAQALLRFAAAE 238

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
             +P V TN   ++   D    DVL A      +  +   R T + +LK+  EM  +  DL
Sbjct: 239  GVPAVLTNAVRYVDALDAPTADVLDAARRLVPLDARHVDRRTAEGHLKSGKEMAEVAEDL 298

Query: 268  --PEA------LENTVEIARRCSFILQVHAPILP-RFIEKECDDIQKEEENELRNKAVAG 318
              P+       LE T  +A +C+  ++    +   R+ E E   +    E  +   AV  
Sbjct: 299  VGPDRDAVLQLLERTARLAEQCAVDVRADLGVGSVRYPELEV--VTTPAEQGMGPSAV-- 354

Query: 319  LEVRLAQGAIAKGY-HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
            L  R   G   +G     +  +RLD EL VI  + +  YFL VAD +   K   +     
Sbjct: 355  LRARCEAGLGRRGMPRTAEVARRLDDELEVIDVLGYPSYFLTVADVVDLIKSLRVRAA-A 413

Query: 378  RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
            RGSGAGS+  Y L I+D+DP+R+ LL ERFL+P R  +PD DID    RR EV   V ++
Sbjct: 414  RGSGAGSLVTYLLGISDVDPIRYGLLMERFLSPLRHQLPDVDIDVESARRMEVYDAVLDR 473

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G  RV+ I    + + + A+RDVG AL +P ++VD + K  P+  A+ V   A+ D   
Sbjct: 474  FGAHRVSCISMMDTYRVRHAIRDVGAALGLPPAEVDAVAKAFPHIRANQVH-AALKDLPE 532

Query: 498  FREARLAD------PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
             R +RL          +D L ++  +L+GL RH + H  G+++ D  L    P+      
Sbjct: 533  LRASRLGSRRGGGTGDLDLLFDLVARLDGLPRHIALHPCGVLLSDATLLDRTPVENSYLG 592

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYH 610
              P++QF+   +E+ GL+K D LG++  + +  +LD +A+  G  VD+  +P DD  T+ 
Sbjct: 593  -YPMSQFDKDDVEELGLLKLDLLGIRMQSAIAHALDEVARVDGETVDIDAVPRDDPTTFE 651

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGK 668
            L+ +  TLG+FQ+ES G R+ +    P+  EDI+  +SL+RPGP+  D +  +   +NG 
Sbjct: 652  LIRSTRTLGMFQIESPGQRELVGKFGPETFEDIVIDISLFRPGPVKSDMVTPFLLARNGW 711

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             + V  HP + P L++T GV+++ EQV+QI   ++G  L++AD  RRA+G   +E   + 
Sbjct: 712  REPVYPHPDLAPYLEQTAGVVVFHEQVLQIVAQMTGCDLAQADEARRALGD--RELHPEV 769

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  F+  A +    + +      L+A F  +GF K+HAAA+A+ +YQ+AW+KTH+P  FL
Sbjct: 770  RAWFVPEAVQRYPVEVVEQVWQVLVA-FGSFGFCKAHAAAFALPTYQSAWLKTHHPAAFL 828

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-----------------PCVDFKVG 831
            A  +T +     K +    DAR F ++++   VN                  P V+   G
Sbjct: 829  AGVLTHDPGMYPK-RLILDDARNFGVRVLGLDVNASAGTYRVERLEADPDAGPEVETAGG 887

Query: 832  DNR---------------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
              R               I  SL+ +KG+    A  +    A +P+ SL DF  R     
Sbjct: 888  WARPSWMPVAMPDPSRYGIRLSLSDVKGI---CAEEVERVVAGQPYRSLTDFWHRA---S 941

Query: 877  LNRRVLESLVFAGALDC-FGY-----------------SRMQLLQSLDNIQKYAQWVEKN 918
            ++R V+E LV AG  D  +G+                 +R  LL  +  + ++++   K 
Sbjct: 942  VSRPVVERLVLAGGFDSLYGFGVRDREAGRPTRGRRQVTRRDLLLQIGELDRWSRSGAKA 1001

Query: 919  RTNKHENI---------------FAHEKG-TFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             T    ++                A E G  +++   L + + +   VR E E  VLG  
Sbjct: 1002 ATTGQLSLDLMGLEMEGTELPGEEAEEPGLGWAEGSGLPELT-DAELVRAELE--VLGLD 1058

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             S H +D Y+P L  +G     E + +  G  + +A + V+ Q    R G R+ +VT  +
Sbjct: 1059 ASRHVVDFYRPFLAAIGAVLAGELLGSRSGAEVLVAGVKVATQTPPIRSGRRVVFVTLDD 1118

Query: 1023 PAKEYEANFF 1032
                 ++ FF
Sbjct: 1119 GTGCTDSTFF 1128


>gi|282854988|ref|ZP_06264320.1| error-prone DNA polymerase [Propionibacterium acnes J139]
 gi|282581576|gb|EFB86961.1| error-prone DNA polymerase [Propionibacterium acnes J139]
          Length = 1134

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 303/1067 (28%), Positives = 490/1067 (45%), Gaps = 123/1067 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HSSYS L+GA S  +++ + A      +A+TD + L+  +  ++ A A G+  I
Sbjct: 57   YAELHCHSSYSFLDGASSPEDLVIRAAELGLSGLALTDHDGLYGVVRMAEAAEACGLSTI 116

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +L I + +      Q     P    +++L +  EGY+RL E ++  YL++ G +   
Sbjct: 117  IGSELSIGVPEP-----QNGVADPVGSHLLVLANGPEGYRRLAEALTDAYLVEGGHKGRP 171

Query: 131  IC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            +  L  L E+      +LTG   G + +       Q AE  L     LFG D + V L  
Sbjct: 172  VHDLDHLAEVADGHWTVLTGCRKGAVRQGLVRGMPQ-AEAELRRLVDLFGIDNVLVELTD 230

Query: 189  HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-- 245
            HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV     + + D   
Sbjct: 231  HRAPTDSRDNDLLAELASRHSLSTVATTAAHYAGGEQFELACALSAVRARRSLDEMDGWL 290

Query: 246  -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             P   P   L++ +EM  +FS   +A++NTV +A R +F L+    + PR  +++  D  
Sbjct: 291  PP--GPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLK---SVRPRLPDQKVPD-G 344

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR+    G         +AK         RL  EL++I    F+GYFLIV+D  
Sbjct: 345  HTPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDRGFAGYFLIVSDIA 396

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  R   PD D+DF  
Sbjct: 397  EFAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREEEPDIDVDFDA 455

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD--------RLC 476
             RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D        R  
Sbjct: 456  RRREEVIQYVYAKYGRRNAAQVADVITYRPRSAIRDMAKALGYSQGQQDAWSRQMERRSV 515

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
              +P+DP  P     I DD               +  ++Q++ GL RH   H+AG+V+  
Sbjct: 516  PPLPHDPDGP----EIPDD---------------VTTLAQQVMGLPRHLGIHSAGMVLTR 556

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVK 595
             P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q  G  
Sbjct: 557  EPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCGRF 616

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ IP ++   Y +L    ++G+FQ+ES      L  ++P C  D+   + L RPGP+
Sbjct: 617  WTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGVLPRLRPRCFYDLAVEIGLIRPGPV 676

Query: 656  DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                V  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   ++++AD+L
Sbjct: 677  QGGAVHPYIRRRTGAEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTVADADLL 736

Query: 714  RRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAMG K+  E ++  + +   G + NGI    A  I+  +  FA++GF +SHA ++A +
Sbjct: 737  RRAMGSKRGVERINSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFAGL 796

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV--DFKV 830
             Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V  D ++
Sbjct: 797  VYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSLVGADLEL 856

Query: 831  --------------------------------------GDNR------IYYSLAAIKGVG 846
                                                  GD+R      +   L+ + G+ 
Sbjct: 857  LDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSGIN 916

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
              TA  I+E    + F SL+D   RVD   L+   +E+L  AGA D    SR   L  + 
Sbjct: 917  IETATRIVEERERESFASLDDLARRVD---LSGEEVEALALAGAFDDLVGSRRGALWQIG 973

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             I             + +     +     +   +E            ++ R  G   + H
Sbjct: 974  QINGVG-------PGQLDVQVVTQPPLLPEPTQMELLG---------DDLRATGISTADH 1017

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            P+   +  L + G+   +       G  + +A +V  +Q+  T  G+
Sbjct: 1018 PVRQVRDALNRRGVVRVDRLDGVESGRRVEVAGVVTHRQRPGTAGGA 1064


>gi|289428491|ref|ZP_06430176.1| error-prone DNA polymerase [Propionibacterium acnes J165]
 gi|289158323|gb|EFD06541.1| error-prone DNA polymerase [Propionibacterium acnes J165]
          Length = 1134

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 292/966 (30%), Positives = 461/966 (47%), Gaps = 107/966 (11%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HSSYS L+GA +  +++ +        +A+TD + L+  +  ++ A A G+  I
Sbjct: 57  YAELHCHSSYSFLDGASNPEDLVIRAVELGLSGLALTDHDGLYGVVRMAEAAEACGLSTI 116

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +L I + +      Q     P    +++L +  EGY+RL E ++  YL++ G++   
Sbjct: 117 IGSELSIGVPEP-----QNGVADPVGSHLLVLANGPEGYRRLAEALTDAYLVEGGRKGRP 171

Query: 131 IC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
           +  L  L E+      +LTG   G + +       Q AE  L     LFG D + V L  
Sbjct: 172 VHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGMLQ-AEAELRRLVDLFGIDNVLVELTD 230

Query: 189 HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-- 245
           HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV     + + D   
Sbjct: 231 HRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVRARRSLDEMDGWL 290

Query: 246 -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   P   L++ +EM  +FS   +A++NTV +A R +F L+    + PR  +++  D  
Sbjct: 291 PP--GPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLK---SVRPRLPDQKVPD-G 344

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               + LR+    G         +AK         RL  EL++I    F+GYFLIV+D +
Sbjct: 345 HTPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDRGFAGYFLIVSDIV 396

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           ++A+   I +  GRGS A S   YAL IT +DP+ + L FERFL+  R   PD D+DF  
Sbjct: 397 EFAQSQGI-LCQGRGSAAASAVCYALGITVVDPVFYGLPFERFLSVLREEEPDIDVDFDA 455

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD--------RLC 476
            RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D        R  
Sbjct: 456 RRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDAWSRQMERRSV 515

Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
             +P+DP  P     I DD               +  ++Q++ GL RH   H+AG+V+  
Sbjct: 516 PPLPHDPDGP----EIPDD---------------VTTLAQQVMGLPRHLGIHSAGMVLTR 556

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVK 595
            P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q  G  
Sbjct: 557 EPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCGRF 616

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPGP+
Sbjct: 617 WTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPGPV 676

Query: 656 DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               V  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD+L
Sbjct: 677 QGGAVHPYIRRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADADLL 736

Query: 714 RRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           RRAMG K+  E +D  + +   G + NGI    A  I+  +  FA++GF +SHA ++A +
Sbjct: 737 RRAMGSKRGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFAGL 796

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV--DFKV 830
            Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V  D ++
Sbjct: 797 VYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADLEL 856

Query: 831 --------------------------------------GDNR------IYYSLAAIKGVG 846
                                                 GD+R      +   L+ + G+ 
Sbjct: 857 LDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSGIN 916

Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
             TA  I+E    + F SL+D   RVD   L+   +E+L  AGA D    SR   L  + 
Sbjct: 917 IETATRIVEERERESFASLDDLARRVD---LSGEEVEALALAGAFDDLVGSRRGALWQIG 973

Query: 907 NIQKYA 912
            I   A
Sbjct: 974 QINGVA 979


>gi|294053669|ref|YP_003547327.1| DNA polymerase III, alpha subunit [Coraliomargarita akajimensis DSM
            45221]
 gi|293613002|gb|ADE53157.1| DNA polymerase III, alpha subunit [Coraliomargarita akajimensis DSM
            45221]
          Length = 1066

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 301/1037 (29%), Positives = 500/1037 (48%), Gaps = 80/1037 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V L   S+++ L GAL    ++         A A+ D N ++ A +F   A   G + +
Sbjct: 3    YVELHARSAFNFLRGALPPKAMVRAFREFGIGAAAMPDRNGVYGAPDFQFAAEELGFEAL 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK---- 126
            I  +L   +   L+ T         +P   + V    GYQ L  L++RM+L  + +    
Sbjct: 63   ISAELT--LARGLEHTWLSGDYLGHLP---VFVENRTGYQNLCRLLTRMHLRWRKQSGPL 117

Query: 127  --QSVRICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDR 181
              +S     + L E+   +EGLI  TG   GP+  A+    ++  E  +     +F  DR
Sbjct: 118  PGESDAYPAADLAELAAHSEGLIATTGDREGPLACAWRAGGARALEAAMDVLCAVFPKDR 177

Query: 182  LYVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            +YV +QRH     R Y+R     +V LA    +PL+ATN   + S       DV   + +
Sbjct: 178  IYVEIQRHLVRSERPYNR----ALVALAEHKGVPLLATNGPAYASSTGRAVLDVFTCLRY 233

Query: 237  STVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
             T + +  R      +  +K+ + M ++F DLP+A++NTV +A R  F L+      P++
Sbjct: 234  HTTLDRAGRLLEANTEQCIKSPAAMRALFEDLPQAVDNTVRLAARLQFRLRDLGYHFPKY 293

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                 + +     + LR   + G + R   G+I++       R++L+ EL +I ++ F+G
Sbjct: 294  PVPTGETMN----SFLRKLTLFGAQNRY--GSISR-----KVRRQLEHELKIIEKLGFAG 342

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV D   +  +  I +  GRGS A S   Y+L IT +DP+   LLFERFL+  R   
Sbjct: 343  YFLIVWDITNFCTERGI-LCQGRGSAANSAVCYSLGITAVDPIAGGLLFERFLSEGRKGW 401

Query: 416  PDFDIDFCQD-RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            PD DID     +R+ VI+ V  +YG    A        + ++A+R++G+ L +P   V+R
Sbjct: 402  PDIDIDLPSGAQREAVIQEVYQRYGKHSAAMTANVNHYRGRSAMREIGKVLGLPLDVVER 461

Query: 475  LCKLIP-NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAG 531
               L    D  H + +       + ++A L   +P     L++ +   GL R+   H+ G
Sbjct: 462  FNALFSRGDFPHTLKMM-----DQIKQAGLDWENPRHQAALQVFKATTGLPRNLGQHSGG 516

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI +  L+Q+VP+         V Q+N    E  G++K D LGL  + ++Q+ ++   +
Sbjct: 517  MVICNDALNQIVPLENASMEGRVVLQWNKDACEDLGMVKIDLLGLGMMAVMQECIELTHE 576

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            RG  VDL+ I   D ETY LL    T+G+FQ+ES      L  MQP C  D+   V++ R
Sbjct: 577  RGRGVDLACIDKTDTETYDLLCRAETIGVFQVESRAQMATLPRMQPRCFYDLAIEVAIIR 636

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGPI   +   Y NR+NG E +  +   + P+L+ T G+ ++QEQV+++  +++G + SE
Sbjct: 637  PGPISGDLANPYLNRRNGIEPVTYLDERLKPILERTLGIPMFQEQVLKMGIVMAGLNASE 696

Query: 710  ADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            ++ LRRA+G  + +E ++  K    +   + GI    A  I   +  FA YGF +SHA +
Sbjct: 697  SEQLRRALGFTRDEERVNAAKATLRARLQQRGIEGEKADWIVNTIDSFALYGFPESHAVS 756

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +A+I+Y +AWMK H   EF  A +  +           QDAR++ ++ +PP V     D 
Sbjct: 757  FALIAYASAWMKVHRTEEFFCALLNNQPMGFYGPATLIQDARRYGLRFLPPDVTRSEWDC 816

Query: 829  KVGDNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
             + D+     I   L  I G+G      ++EA A +PF++L  F      K+   RVL  
Sbjct: 817  TIEDDEGAACIRIGLKMINGLGQPAVVAMLEARAVRPFETLAQFRLGTQFKQDELRVLAQ 876

Query: 885  LVFAGALDCFGYSRMQLLQSLD--------NIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
               AGAL+ F  SR Q L +++        ++ +  Q V ++    +       + T  +
Sbjct: 877  ---AGALNGFMASRRQALWAVEQPLELDLFSVAELEQQVAEDPVPYNRRAAPLPEMTQWE 933

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI 995
            ++  + F+  + +V               HP+   +P LR  G     ES+ T R G  +
Sbjct: 934  RLCAD-FATTSVTV-------------GSHPMRQMRPQLR--GRTWTAESLNTARDGQRV 977

Query: 996  RLAAMVVSKQQKKTRKG 1012
             +   V+ +Q+  T KG
Sbjct: 978  TVVGAVICRQRPGTAKG 994


>gi|325272956|ref|ZP_08139274.1| error-prone DNA polymerase [Pseudomonas sp. TJI-51]
 gi|324101909|gb|EGB99437.1| error-prone DNA polymerase [Pseudomonas sp. TJI-51]
          Length = 1026

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 301/1026 (29%), Positives = 469/1026 (45%), Gaps = 85/1026 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  +  L   S++S   GA S + +  +       A+AITD   L   +   Q A    +
Sbjct: 3    SAPYAELHCLSNFSFQRGASSADELFRRAKEQGYQALAITDECTLAGIVRAWQAAKVHQL 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
              ++G   ++ + D               P +VLLV+   GYQ L  L++R     + K 
Sbjct: 63   PLVVGS--EVQLHDG--------------PKLVLLVADLAGYQNLCALITRARRRAE-KG 105

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              ++    LQ+     L +   G  G      +              + LF +RL++ + 
Sbjct: 106  DYQLFRDDLQQHHHGLLALWVAGDRGDTATGQWL-------------RGLFAERLWLAVH 152

Query: 188  RHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
             HRG D  R  Q  Q LA    +  VA  +            D + A+     V++  R 
Sbjct: 153  LHRGSDDARHLQGQQALAAELGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVAEAGRF 212

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +L++  ++  ++   PE L  T+ IA+RC F L       PR +  E      
Sbjct: 213  LFANGERHLRSPVQLAELYP--PEMLAETLAIAQRCQFDLGQLRYQYPRELVPEA----H 266

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     GL VR   G  AK       RQ LD EL +I  + +  YFL V D + 
Sbjct: 267  TPASWLRALCEQGLPVRWPHGPSAK------VRQVLDTELALIEELGYESYFLTVHDIVA 320

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A++  I +  GRGS A SV  + L IT++DP++  LLFERFL+ +R   PD D+DF  D
Sbjct: 321  FARRQRI-LCQGRGSAANSVVCFVLGITELDPMQHRLLFERFLSRERNEPPDIDVDFEHD 379

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV  +YG  R A      +  A  A+RDV R L +P  QVD L K        
Sbjct: 380  RREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARVLGLPMDQVDALAKCCGR---- 435

Query: 486  PVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                  I D+ R  EA      P + R+L ++ +L G  RH S H  G VI  +PL QLV
Sbjct: 436  --WSDRIPDEQRLAEAGFEAGSPLLRRVLILAGELIGFPRHLSQHPGGFVISQQPLDQLV 493

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+     ++  V Q++   ++  GL+K D L L  L+ L++  D L + RG ++ L+ IP
Sbjct: 494  PVENAAMAERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLLQRHRGRELTLATIP 553

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             +D  TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  
Sbjct: 554  SEDPATYAMISRAETMGVFQIESRAQMAMLPRLRPNTFYDLVIEVAIVRPGPIQGDMVHP 613

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+  +E +    P +  + + T GV ++QEQVM++A + + YS  EAD LRR+M   
Sbjct: 614  YLRRRLKQEPVTYPSPKLKEVFERTLGVPLFQEQVMELAMVAADYSPGEADQLRRSMAAW 673

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    ++  ++R + G  +NG     A  IFE +  F  YGF +SHAA++A++ Y ++W+
Sbjct: 674  KRHGGLEPHRQRLLQGMLRNGYELAFAERIFEQIKGFGSYGFPESHAASFALLCYASSWL 733

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNR 834
            K H P  F  A +           +  Q+AR+  I++ P  V     D  +     G   
Sbjct: 734  KCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSEWDCTLEPDAQGTLA 793

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +   L  ++G+    AR + +A A +P+  +ED C R     L  R    L  AGAL   
Sbjct: 794  LRMGLRLVRGLAEADARRLEQARAQQPWRDVEDLCLRAG---LATRARACLADAGALRAL 850

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
               R Q           A+W +         +FA  +      + L   +V    V    
Sbjct: 851  ASDRHQ-----------ARW-QVAAVQAQLPLFADVQAVPEVAVQLPAPTVAQDLV---A 895

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            + + LG     HPL + +  LR +G +   E      G+NI +  +VV +Q+ +T  G  
Sbjct: 896  DYQALGTTLGPHPLTLLRTRLRALGCRSSAELQGLEHGDNIAVTGLVVGRQRPQTASG-- 953

Query: 1015 IGWVTF 1020
               VTF
Sbjct: 954  ---VTF 956


>gi|313665521|ref|YP_004047392.1| DNA polymerase III DnaE [Mycoplasma leachii PG50]
 gi|312949998|gb|ADR24594.1| putative DNA polymerase III DnaE [Mycoplasma leachii PG50]
          Length = 987

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 249/727 (34%), Positives = 396/727 (54%), Gaps = 33/727 (4%)

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
            +  L ++  Q  I      + Y  RL++EL VI +M FS YFLIV+D++ +AKKN+I VG
Sbjct: 245  ICLLSLKKYQQKIKPNLDLKLYINRLNYELEVIKQMGFSDYFLIVSDYVNFAKKNDILVG 304

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
            PGRGS AGS+ +Y L ITDIDPL + LLFERFLNPDR ++PD D+DF  +RR+EV+ Y+ 
Sbjct: 305  PGRGSAAGSLISYLLRITDIDPLEYDLLFERFLNPDRSNLPDIDLDFQDNRREEVLEYLF 364

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
             KYG   V  I T+ ++  K A RD+ R   +    V+++ K +  D            +
Sbjct: 365  EKYGKNHVGMITTYQTIGYKMAWRDLCRVFNIDLLIVNKISKAL--DQYTNSDFLEFIKE 422

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
            ++       +     +     K+ GL R  STHAAGIV+ D  L +LVP+ +   + +  
Sbjct: 423  NKLLNDYFQNNVFKEIFITMHKIVGLPRQTSTHAAGIVLTDCDLRELVPI-KIGFNGINQ 481

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQ--KSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
             QF+M +++  GLIK D LGL+ LT +Q  K L +L Q  +K+ L+ IP +D + + LL 
Sbjct: 482  IQFDMNYLDDLGLIKMDILGLRNLTTIQEIKHLIYLNQ-NLKISLNKIPLNDKKAFELLK 540

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY-NNRKNGKEKIV 672
             K T GIFQLES GM   +  MQ D IE I    +LYRPGP + I  Y  N+K  K KI 
Sbjct: 541  NKQTSGIFQLESKGMTDLISKMQVDSIEQISIASALYRPGPQEMIPTYLGNKKTNKFKI- 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             I   +  +LK T G+IIYQEQVMQ+   ++ +S ++AD++RRAM KK  + M   K  F
Sbjct: 600  -IDQSVFEILKPTYGIIIYQEQVMQMLNKVANFSYAKADIIRRAMSKKNNKVMQSMKLEF 658

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I+ A KN  S   A  I+  + KF++YGFNKSH+ +Y+ ISY  A+ K H+  EF  + +
Sbjct: 659  INSAVKNNFSYNKANLIWNWIEKFSNYGFNKSHSISYSYISYWLAYFKAHFTTEFYTSLL 718

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
               + N  K +++ ++   + I++   SV     ++++ + +IY  L  IK +G    + 
Sbjct: 719  DQNIGNEIKTQQYIKELYDYKIKVNKSSVINANFNYQIINKQIYMPLTCIKSIGYEVVKK 778

Query: 853  IMEASADKP--FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
            I  A ++    +  + +F   +  +K+N  VL++L+ AGALD F Y++  ++++LD +  
Sbjct: 779  INLAKSENENMYLDIHNFILAIVKQKININVLQTLIKAGALDIFNYNKKTMIENLDLLIS 838

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
             A     N   +  NI   E      KI L  +      +    E+ + GF+   +P   
Sbjct: 839  QA-----NAYKQVNNILDDE------KINLIIYDEYEDEILASFEKELYGFFIEQNP--- 884

Query: 971  YKPILRKMGIKGYEES---VATIRGNNIR-LAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
                + K+    ++ +   ++ +  N ++ +   ++  ++ K +  +++ +VT  +   E
Sbjct: 885  ----ILKLKTSNFDLNLIDISKLEYNKVQVILGYILKIKEIKDKNNNKMAFVTIFDNTSE 940

Query: 1027 YEANFFP 1033
             E   F 
Sbjct: 941  LELTIFS 947


>gi|302868946|ref|YP_003837583.1| DNA polymerase III subunit alpha [Micromonospora aurantiaca ATCC
            27029]
 gi|302571805|gb|ADL48007.1| DNA polymerase III, alpha subunit [Micromonospora aurantiaca ATCC
            27029]
          Length = 1116

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 303/1042 (29%), Positives = 477/1042 (45%), Gaps = 90/1042 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++S L+GA     + ++ A     A+A+TD +  +  + F++ A A  +  I
Sbjct: 66   YAELHAHSNFSFLDGASHPEELAEEAARLGLTALAVTDHDGFYGVVRFAEAARALRLPTI 125

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L + +        Q   P P    +++L    EGY RL   +SR  L  +G +  R
Sbjct: 126  FGAELSLGLPGP-----QNGEPDPLGRHLLVLAHGHEGYARLAATISRAQL--RGGEKGR 178

Query: 131  ICLSWLQEIGTE---GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
                 L+E+  E    +++LTG   G +  A        A + L     LFG + + V L
Sbjct: 179  PVYGELEELAAELRDHVLVLTGCRKGHVPAALLTEGVDAAARELDRLTALFGAETVAVEL 238

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H    D  R   +  LA    LP VATNN  + +         + AV     + + D 
Sbjct: 239  TDHGHPVDADRNDALADLAAAAGLPTVATNNVHYATPGRRRLATTVAAVRARRSLDEIDG 298

Query: 246  --PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              P     H L++ +EM + F+  P A+    E     +F LQ+ AP LP +        
Sbjct: 299  WLPAAATAH-LRSGAEMAARFAAYPGAVARAAEYGAELAFDLQLVAPRLPAYPVPPG--- 354

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E + LR   + G   R          H + Y Q L+ EL +I  + F GYFL+V D 
Sbjct: 355  -HTEMSWLRRLTMDGARERYGP----PEAHPEAYAQ-LEHELRMIEDLGFPGYFLVVYDI 408

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + + +  +I    GRGS A S   YAL IT++D +R  LLFERFL P+R   PD D+D  
Sbjct: 409  VAFCRAQDI-YCQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVDIE 467

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR+EVI++V  +YG E  AQ+    S + ++A+RDV +A      Q D   K I  D 
Sbjct: 468  SDRREEVIQHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQI--DR 525

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               V+   +AD              ++++  + +L+   RH   H+ G+VI DRP+ ++ 
Sbjct: 526  WGSVAAVDVADIP------------EQVVAYANELQTFPRHLGIHSGGMVICDRPVIEVC 573

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+         V Q++       GL+KFD LGL  L+ L    D +   G ++DL  +  
Sbjct: 574  PVEWGRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYGYDLI---GSRLDLGDMTL 630

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD E Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  Y
Sbjct: 631  DDPEVYDMLCRADSVGVFQVESRAQMATLPRLKPREFYDLVVEVALIRPGPIQGGSVHPY 690

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KK 720
              RKNG+E +   HPL+   L++T GV ++QEQ+MQ+A  L+G+  + AD LRRAMG K+
Sbjct: 691  IRRKNGQEPVTYAHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAGADQLRRAMGAKR 750

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              E M +  +R  +G ++ GI+  +A +++  L  FA YGF +SHA ++A + Y ++W+K
Sbjct: 751  SVERMAQIADRLYAGMAERGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASSWLK 810

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT----------------- 823
             ++P  FLAA +  +       +    DAR+  +++  P +N                  
Sbjct: 811  RYHPGPFLAALLNAQPMGFYSPQTLADDARRHGVEVRRPDINASGAKAVLESTPETRWGS 870

Query: 824  ----PCVDFKVGDNRIYYSLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLN 878
                P   + +G   +   L +++ +G   A  I  E +A  P+  + D   RV    L 
Sbjct: 871  VPGEPPHAWGLGGPAVRLGLGSVRTLGEDVAERIEAERAAHGPYRDMPDLARRV---GLT 927

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
               LE+L  A A  CFG +R Q L +            ++R  +          T +D  
Sbjct: 928  AAQLEALATADAFACFGLTRRQALWAAGAAA-------QDRPGRLPGTV-----TGADPP 975

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
            TL   +  +   R   +    G     HP    +  L ++G            G  IR+ 
Sbjct: 976  TLPGMAAVD---RLVADVWATGLSPESHPARFIRDRLDELGAVPIARLGQVPPGQRIRVG 1032

Query: 999  AMVVSKQQKKTRKGSRIGWVTF 1020
             +V  +Q+  T  G     VTF
Sbjct: 1033 GIVTHRQRPATAGG-----VTF 1049


>gi|315504584|ref|YP_004083471.1| DNA polymerase iii, alpha subunit [Micromonospora sp. L5]
 gi|315411203|gb|ADU09320.1| DNA polymerase III, alpha subunit [Micromonospora sp. L5]
          Length = 1116

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 303/1042 (29%), Positives = 477/1042 (45%), Gaps = 90/1042 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++S L+GA     + ++ A     A+A+TD +  +  + F++ A A  +  I
Sbjct: 66   YAELHAHSNFSFLDGASHPEELAEEAARLGLTALAVTDHDGFYGVVRFAEAARALRLPTI 125

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L + +        Q   P P    +++L    EGY RL   +SR  L  +G +  R
Sbjct: 126  FGAELSLGLPGP-----QNGEPDPLGRHLLVLAHGHEGYARLAATISRAQL--RGGEKGR 178

Query: 131  ICLSWLQEIGTE---GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
                 L+E+  E    +++LTG   G +  A        A + L     LFG + + V L
Sbjct: 179  PVYGELEELAAELRDHVLVLTGCRKGHVPAALLTEGVDAAARELDRLTALFGAETVAVEL 238

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H    D  R   +  LA    LP VATNN  + +         + AV     + + D 
Sbjct: 239  TDHGHPVDADRNDALADLAAAAGLPTVATNNVHYATPGRRRLATTVAAVRARRSLDEIDG 298

Query: 246  --PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              P     H L++ +EM + F+  P A+    E     +F LQ+ AP LP +        
Sbjct: 299  WLPAAATAH-LRSGAEMAARFAAYPGAVARAAEYGAELAFDLQLVAPRLPAYPVPPG--- 354

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E + LR   + G   R          H + Y Q L+ EL +I  + F GYFL+V D 
Sbjct: 355  -HTEMSWLRRLTMDGARERYGP----PEAHPEAYAQ-LEHELRMIEDLGFPGYFLVVYDI 408

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + + +  +I    GRGS A S   YAL IT++D +R  LLFERFL P+R   PD D+D  
Sbjct: 409  VAFCRAQDI-YCQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVDIE 467

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR+EVI++V  +YG E  AQ+    S + ++A+RDV +A      Q D   K I  D 
Sbjct: 468  SDRREEVIQHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQI--DR 525

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               V+   +AD              ++++  + +L+   RH   H+ G+VI DRP+ ++ 
Sbjct: 526  WGSVAAVDVADIP------------EQVVAYANELQTFPRHLGIHSGGMVICDRPVIEVC 573

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+         V Q++       GL+KFD LGL  L+ L    D +   G ++DL  +  
Sbjct: 574  PVEWGRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYGYDLI---GSRLDLGDMTL 630

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD E Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  Y
Sbjct: 631  DDPEVYDMLCRADSVGVFQVESRAQMATLPRLKPREFYDLVVEVALIRPGPIQGGSVHPY 690

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KK 720
              RKNG+E +   HPL+   L++T GV ++QEQ+MQ+A  L+G+  + AD LRRAMG K+
Sbjct: 691  IRRKNGQEPVTYAHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAGADQLRRAMGAKR 750

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              E M +  +R  +G ++ GI+  +A +++  L  FA YGF +SHA ++A + Y ++W+K
Sbjct: 751  SVERMAQIADRLYAGMAERGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASSWLK 810

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT----------------- 823
             ++P  FLAA +  +       +    DAR+  +++  P +N                  
Sbjct: 811  RYHPGPFLAALLNAQPMGFYSPQTLADDARRHGVEVRRPDINASGAKAVLESTPETRWGS 870

Query: 824  ----PCVDFKVGDNRIYYSLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLN 878
                P   + +G   +   L +++ +G   A  I  E +A  P+  + D   RV    L 
Sbjct: 871  VPGEPPHAWGLGGPAVRLGLGSVRTLGEDVAERIEAERAAHGPYRDMPDLARRV---GLT 927

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
               LE+L  A A  CFG +R Q L +            ++R  +          T +D  
Sbjct: 928  AAQLEALATADAFACFGLTRRQALWAAGAAA-------QDRPGRLPGTV-----TGADPP 975

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
            TL   +  +   R   +    G     HP    +  L ++G            G  IR+ 
Sbjct: 976  TLPGMAAVD---RLVADVWATGLSPESHPARFIRDRLDELGAVPIARLGQVPPGQRIRVG 1032

Query: 999  AMVVSKQQKKTRKGSRIGWVTF 1020
             +V  +Q+  T  G     VTF
Sbjct: 1033 GIVTHRQRPATAGG-----VTF 1049


>gi|146320384|ref|YP_001200095.1| DNA polymerase III, alpha subunit [Streptococcus suis 98HAH33]
 gi|145691190|gb|ABP91695.1| DNA polymerase III, alpha subunit [Streptococcus suis 98HAH33]
          Length = 822

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 239/655 (36%), Positives = 371/655 (56%), Gaps = 29/655 (4%)

Query: 315 AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
           AV  L  R  QG   KG     Y++RL+ EL++I +M+F  YFLIV D +++ +     +
Sbjct: 26  AVEELYERSYQGLEEKGLTNSLYKERLEKELSIIHQMEFDDYFLIVWDLLRFGRSQGYYM 85

Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
           G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R SMPD DID     R + IRYV
Sbjct: 86  GMGRGSAVGSLVAYALNITGIDPVKHNLLFERFLNAERYSMPDIDIDIPDIHRADFIRYV 145

Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
           +++YG    AQI+T+ +  AK A+RDV +    P  ++  + K I    +   + Q    
Sbjct: 146 RDRYGSTHAAQIVTYSTFGAKQAIRDVFKRFGTPEYELSNITKKISFRDSLTSAYQR--- 202

Query: 495 DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
           ++ FR+   +     +   I+Q++EG  R  S HAAGIV+ D  L+  +P+   +  D+ 
Sbjct: 203 NAAFRQIINSKIEYQKAFAIAQQIEGQPRQTSIHAAGIVMSDEELTDTIPL--KIGDDML 260

Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLT 613
           VTQ++   +E  GL+K DFLGL+ LT +QK  + + +R   ++D++ I  +D +T  L  
Sbjct: 261 VTQYDAHAVEANGLLKMDFLGLRNLTFVQKMAEGVRERYQQEIDIAKIDLEDKKTLELFA 320

Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              T GIFQ E  G    L  ++P   EDI+A  SL RPG  D    +  RK+G+E +  
Sbjct: 321 AGRTKGIFQFEQPGAISLLRRVKPGRFEDIVATTSLNRPGASDYSDNFVKRKHGQETVDL 380

Query: 674 IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
           + P I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM   +  F+
Sbjct: 381 LDPTIAPILQPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNAQEMQAMEAEFL 440

Query: 734 SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            GA KNG ++  A  IF ++AKFA YGFN+SHA AY+ +++Q A+ K+HY   F    + 
Sbjct: 441 QGALKNGHAEENAREIFGMMAKFAGYGFNRSHAYAYSALAFQMAYFKSHYTDVFFDVMLN 500

Query: 794 LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
                      + +DA QF+ ++   ++N      K   +++Y  L  +KG+    A  I
Sbjct: 501 ------HSSSAYIEDAMQFDFEVARLTINNIPYHDKFDKSKVYLGLKTLKGLPKDLALWI 554

Query: 854 MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
           ++    +P+ S+EDF  R+      + +L  L+  G  D F  +R +++++LDN+  +A+
Sbjct: 555 LD---HRPYKSVEDFILRLPDNFKKKDLLIPLIQIGLFDDFDANRKKIIENLDNLFVFAE 611

Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
            +           FA E  +++D   +E +S    S +F  EQ +LG   S HPL
Sbjct: 612 AI--------GTFFAEESYSWTD---VEDYS---DSEKFMLEQELLGVGISPHPL 652


>gi|289425592|ref|ZP_06427368.1| error-prone DNA polymerase [Propionibacterium acnes SK187]
 gi|289153998|gb|EFD02687.1| error-prone DNA polymerase [Propionibacterium acnes SK187]
          Length = 1137

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 291/966 (30%), Positives = 460/966 (47%), Gaps = 107/966 (11%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HSSYS L+GA +  +++ +        +A+TD + L+  +  ++ A A G+  I
Sbjct: 60  YAELHCHSSYSFLDGASNPEDLVIRAVELGLSGLALTDHDGLYGVVRMAEAAEACGLSTI 119

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +L I + +      Q     P    +++L +  EGY+RL E ++  YL++ G++   
Sbjct: 120 IGSELSIGVPEP-----QNGVADPVGSHLLVLANGPEGYRRLAEALTDAYLVEGGRKGRP 174

Query: 131 IC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
           +  L  L E+      +LTG   G + +       Q AE  L     LFG D + V L  
Sbjct: 175 VHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGMLQ-AEAELRRLVDLFGIDNVLVELTD 233

Query: 189 HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-- 245
           HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV     + + D   
Sbjct: 234 HRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVRARRSLDEMDGWL 293

Query: 246 -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   P   L++ +EM  +FS   +A++NTV +A R +F L+    + PR  +++  D  
Sbjct: 294 PP--GPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLK---SVRPRLPDQKVPD-G 347

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               + LR+    G         +AK         RL  EL++I    F+GYFLIV+D +
Sbjct: 348 HTPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDRGFAGYFLIVSDIV 399

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           ++A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  R   PD D+DF  
Sbjct: 400 EFAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREEEPDIDVDFDA 458

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD--------RLC 476
            RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D        R  
Sbjct: 459 RRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDAWSRQMERRSV 518

Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
             +P+DP  P     I DD               +  ++Q++ GL RH   H+AG+V+  
Sbjct: 519 PPLPHDPDGP----EIPDD---------------VTTLAQQVMGLPRHLGIHSAGMVLTR 559

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVK 595
            P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q  G  
Sbjct: 560 EPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCGRF 619

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPGP+
Sbjct: 620 WTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPGPV 679

Query: 656 DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               V  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD+L
Sbjct: 680 QGGAVHPYIRRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADADLL 739

Query: 714 RRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           RRAMG K+  E +D  + +   G + NGI    A  I+  +  FA++GF +SHA ++A +
Sbjct: 740 RRAMGSKRGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFAGL 799

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV--DFKV 830
            Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V  D ++
Sbjct: 800 VYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADLEL 859

Query: 831 --------------------------------------GDNR------IYYSLAAIKGVG 846
                                                 GD+R      +   L+ + G+ 
Sbjct: 860 LDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSGIN 919

Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
             TA  I+E    + F SL+D   RVD   L+   +E+L  AGA D    SR   L  + 
Sbjct: 920 IETATRIVEERERESFASLDDLARRVD---LSGEEVEALALAGAFDDLVGSRRGALWQIG 976

Query: 907 NIQKYA 912
            I   A
Sbjct: 977 QINGVA 982


>gi|50843116|ref|YP_056343.1| error-prone DNA polymerase [Propionibacterium acnes KPA171202]
 gi|295131169|ref|YP_003581832.1| DNA polymerase III, alpha subunit [Propionibacterium acnes SK137]
 gi|71151831|sp|Q6A780|DNAE2_PROAC RecName: Full=Error-prone DNA polymerase
 gi|50840718|gb|AAT83385.1| DNA polymerase III, alpha chain [Propionibacterium acnes KPA171202]
 gi|291376583|gb|ADE00438.1| DNA polymerase III, alpha subunit [Propionibacterium acnes SK137]
          Length = 1134

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 291/966 (30%), Positives = 460/966 (47%), Gaps = 107/966 (11%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HSSYS L+GA +  +++ +        +A+TD + L+  +  ++ A A G+  I
Sbjct: 57  YAELHCHSSYSFLDGASNPEDLVIRAVELGLSGLALTDHDGLYGVVRMAEAAEACGLSTI 116

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +L I + +      Q     P    +++L +  EGY+RL E ++  YL++ G++   
Sbjct: 117 IGSELSIGVPEP-----QNGVADPVGSHLLVLANGPEGYRRLAEALTDAYLVEGGRKGRP 171

Query: 131 IC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
           +  L  L E+      +LTG   G + +       Q AE  L     LFG D + V L  
Sbjct: 172 VHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGMLQ-AEAELRRLVDLFGIDNVLVELTD 230

Query: 189 HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-- 245
           HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV     + + D   
Sbjct: 231 HRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVRARRSLDEMDGWL 290

Query: 246 -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   P   L++ +EM  +FS   +A++NTV +A R +F L+    + PR  +++  D  
Sbjct: 291 PP--GPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLK---SVRPRLPDQKVPD-G 344

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               + LR+    G         +AK         RL  EL++I    F+GYFLIV+D +
Sbjct: 345 HTPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDRGFAGYFLIVSDIV 396

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           ++A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  R   PD D+DF  
Sbjct: 397 EFAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREEEPDIDVDFDA 455

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD--------RLC 476
            RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D        R  
Sbjct: 456 RRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDAWSRQMERRSV 515

Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
             +P+DP  P     I DD               +  ++Q++ GL RH   H+AG+V+  
Sbjct: 516 PPLPHDPDGP----EIPDD---------------VTTLAQQVMGLPRHLGIHSAGMVLTR 556

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVK 595
            P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q  G  
Sbjct: 557 EPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCGRF 616

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPGP+
Sbjct: 617 WTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPGPV 676

Query: 656 DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               V  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD+L
Sbjct: 677 QGGAVHPYIRRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADADLL 736

Query: 714 RRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           RRAMG K+  E +D  + +   G + NGI    A  I+  +  FA++GF +SHA ++A +
Sbjct: 737 RRAMGSKRGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFAGL 796

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV--DFKV 830
            Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V  D ++
Sbjct: 797 VYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADLEL 856

Query: 831 --------------------------------------GDNR------IYYSLAAIKGVG 846
                                                 GD+R      +   L+ + G+ 
Sbjct: 857 LDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSGIN 916

Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
             TA  I+E    + F SL+D   RVD   L+   +E+L  AGA D    SR   L  + 
Sbjct: 917 IETATRIVEERERESFASLDDLARRVD---LSGEEVEALALAGAFDDLVGSRRGALWQIG 973

Query: 907 NIQKYA 912
            I   A
Sbjct: 974 QINGVA 979


>gi|85057409|ref|YP_456325.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789514|gb|ABC65246.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 916

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 280/919 (30%), Positives = 474/919 (51%), Gaps = 85/919 (9%)

Query: 16  VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75
           + S YSLL+   SL  ++ K   +    +A++D +NL+    F +      I+PI+G ++
Sbjct: 7   LQSFYSLLQSLNSLETLVQKAKENNYDFVALSD-DNLYGMPTFLKLCHKYQIKPILGLKI 65

Query: 76  DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
                 N    NQ       + ++++     +G + LI++ + +    + K++ +I L+ 
Sbjct: 66  ------NFFHNNQ-------LATLLIYAKNDQGIKNLIQISTII----KNKETPQINLNK 108

Query: 136 LQEIGTEGLIMLTGGSSGPIDRAFFFNSS----QVAEKRLLTFKKLFGDRLYVNLQRHRG 191
           +  +G +GL  L  G +   D  FF +      Q++ + L  F     D L + +     
Sbjct: 109 IANLG-KGLFTLIPGENPFFDEIFFRDQKDKFFQISTQLLKIF-----DELVLGISYQNS 162

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
           +       ++  A   ++P V  N + + + +    + +L  + +    +Q D   +T D
Sbjct: 163 FLELLSENIIDFANHFQIPYVPVNKTCYDTFQAQPTYQILTQMENKKNDNQTDLSFLTKD 222

Query: 252 HY--LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP---ILPRFIEKECDDIQKE 306
           ++    N      +F  L + +          S   Q + P    LP F+    D +Q +
Sbjct: 223 NFDSTYNAQTHKKMFIYLKKLI---------FSIKYQNYLPQKFFLPSFV----DFLQPQ 269

Query: 307 E---ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
           +   ++ L+  +  GL     Q    K      Y+QRLD EL +IA M++  YFLIV D 
Sbjct: 270 KITAKDYLKQISYEGLR----QYINFKSPKYTKYQQRLDQELKIIADMEYDNYFLIVGDV 325

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           +++AKK  I VGPGRGS +GS+  + L IT+IDPL++ L+FERFLNP R +MPD D+DF 
Sbjct: 326 VRYAKKQGILVGPGRGSSSGSLVCFCLQITEIDPLQYELIFERFLNPQRKNMPDIDLDFP 385

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RD +I+YV  KYG + VA IITFG   ++ A+             ++ L K +P   
Sbjct: 386 DNTRDLIIQYVCQKYGTKHVASIITFGRFVSQKAI-------------INELVKFMPTVK 432

Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                 + A  D     +    D  +  LL ++  +EG+ R   TH AGI++   PL Q+
Sbjct: 433 EFQTKRVLAYLDKKSTYQKETLDLQMKNLLTMASYIEGMPRFTGTHPAGIILSQIPLYQI 492

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
           +P+ +   ++L  TQ+    +E  GL+K DFLGL++LTL+ + +  + +   K  L  IP
Sbjct: 493 IPLQKGTHNNLQQTQWEASDLESIGLLKIDFLGLRSLTLINQMVLAIQKNNFKFSLFKIP 552

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +D +T+ LL    T+GIFQLES   +  L+ M P   ED+IAL++L RPGPID+  ++ 
Sbjct: 553 LNDKKTFELLQQGKTIGIFQLESYNAKIFLQKMMPQKFEDLIALLALNRPGPIDSFNMF- 611

Query: 663 NRKNGKEKIVSIH-PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             KN  +K  +   PLID +L+ T G+I+YQEQ+MQI  + + YSL++AD+ RRA+ KK 
Sbjct: 612 -LKNRHQKTTTFFSPLIDFILQPTYGIILYQEQIMQILAVFAKYSLAQADLFRRAISKKE 670

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
           K+ + ++K  FI+ + + G   TIA  I++ + KFA+YGFNKSH+ AY++ISY+ A++K 
Sbjct: 671 KDLLLQEKNNFIAQSKEQGRDLTIAYKIYDYILKFANYGFNKSHSVAYSLISYRMAYLKA 730

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           ++ + F+   +   + +  + +   ++  Q  I I PP + +    +   DN+++  L  
Sbjct: 731 NHFIAFVITLLNDAIGDTSQTEILLKEVIQKGIIIEPPHIFSSQDKYYFQDNKLFLPLTI 790

Query: 842 IKGVGTTTARHIM--------------EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           IKG+  +  + +M              + S    + S + F  ++    L   +L +L+F
Sbjct: 791 IKGINVSFCQELMKKQKNLIKEYQKLTKTSQSPLYYSFKTFKQQL-FPFLTEPLLTNLIF 849

Query: 888 AGALDCFGYSRMQLLQSLD 906
           AGA D  G +R  L Q+ D
Sbjct: 850 AGAFDKMGLNRNTLEQNKD 868


>gi|258653321|ref|YP_003202477.1| error-prone DNA polymerase [Nakamurella multipartita DSM 44233]
 gi|258556546|gb|ACV79488.1| DNA polymerase III, alpha subunit [Nakamurella multipartita DSM
           44233]
          Length = 1092

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 279/906 (30%), Positives = 458/906 (50%), Gaps = 55/906 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS++S L+GA +   ++ +       A+AITD + L+  + F++ A  AG++ +
Sbjct: 55  YAELHCHSAFSFLDGASTPEQLVAEAVRLGLEALAITDHDGLYGIVRFAEAAREAGLRTL 114

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L + + +      Q   P P    +++L    EGY RL   +SR  L    K    
Sbjct: 115 YGAELSLGLPEP-----QLGVPDPVGEHLLVLARGQEGYHRLSTQISRAQLAGGAKGRPV 169

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
             L  L +      ++LTG   G + RA   +    A + L      FG D + V L   
Sbjct: 170 YDLDELADAAGGHWLILTGCRKGSVRRALQRHGPARAAEELRALMDRFGRDNVVVELTTS 229

Query: 190 RG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D      +  LA   +LP+VAT  + + +  +      + AV     + + D P +
Sbjct: 230 LAPTDDEDNDALAALAAELDLPIVATTAAHYATPAEGRIAAAMAAVRARRSLEEAD-PYL 288

Query: 249 T--PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              P  +L++ +EM ++F+  P A+     I R CSF L++ AP LP +      D    
Sbjct: 289 PAGPGSHLRSGAEMAALFARYPAAVPTAAAIGRECSFDLRLLAPKLPPYDVPPGHD---- 344

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYR----QRLDFELNVIARMKFSGYFLIVAD 362
           E + LR   +AG          A+ Y + D R     +++ EL +IAR+ F GYFLIV D
Sbjct: 345 ENSHLRQLTLAG---------AARRYGSPDDRPDAYAQIEKELGIIARLDFPGYFLIVND 395

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            + + ++++I +  GRGS A S   YAL IT +D +R+ LLFERFL P+R   PD D+D 
Sbjct: 396 IVDFCRRSDI-LCQGRGSAANSAVCYALGITAVDAVRYELLFERFLAPERDGPPDIDVDI 454

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
             DRR+EVI+YV   YG ++ AQ+    + + + A+RD+ +AL     Q D   K +  D
Sbjct: 455 ESDRREEVIQYVFATYGRDKAAQVANVNTYRPRMAVRDMAKALGHSPGQQDAYSKQL--D 512

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              P++ Q   D S       AD     +L ++ +++   RH S H+ G+VI DRP++ +
Sbjct: 513 GWVPLAGQ---DASGIP----AD-----VLALAHRIQDYPRHLSIHSGGMVICDRPVASV 560

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
            P+      +  V Q++       GL+KFD LGL  L+ L  ++D + +  G+++D + +
Sbjct: 561 CPVEWARMENRSVLQWDKDDCAAMGLVKFDLLGLGMLSALHYAVDLIREHEGLEIDFAQL 620

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
             ++   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V 
Sbjct: 621 DLEEPAVYEMLQRADSVGVFQVESRAQMATLPRLKPRTFYDLVVEVALIRPGPIQGNAVH 680

Query: 661 -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG- 718
            Y  R+NG+E++   HP+++  L +T G+ ++QEQ+MQ+A  ++G+   EAD LRRAMG 
Sbjct: 681 PYIRRRNGQEEVTYDHPVMEKSLAKTLGIPLFQEQLMQLAVDVAGFDAGEADQLRRAMGA 740

Query: 719 KKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
           K+ K +M+K K R   G   ++GI+  +A  I+E L  FA++GF +SHA ++A + + +A
Sbjct: 741 KRSKGKMEKLKARLYDGMRERHGITGPVADRIYERLLAFANFGFAESHALSFAALVFYSA 800

Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT--PCVDFKVG-DNR 834
           W+K H+P  F AA +  +       +    DAR+  + I  P +N      D + G D R
Sbjct: 801 WLKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVSIRRPDINASRAHADLEPGPDGR 860

Query: 835 --IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             +   L  ++ +G   A  I+     + + SL++    V    L     E+L  AGALD
Sbjct: 861 PAVRLGLDEVRTIGDELAARIVARRPTEGYRSLDELTRTV---TLTAPQAEALATAGALD 917

Query: 893 CFGYSR 898
               +R
Sbjct: 918 TLVGTR 923


>gi|237784951|ref|YP_002905656.1| DNA polymerase III subunit alpha [Corynebacterium kroppenstedtii DSM
            44385]
 gi|237757863|gb|ACR17113.1| DNA polymerase III, alpha subunit [Corynebacterium kroppenstedtii DSM
            44385]
          Length = 1039

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 310/1034 (29%), Positives = 477/1034 (46%), Gaps = 122/1034 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S+YS L GA S   ++D  A     A+A+ D + ++ A++F++ A  +GI  I
Sbjct: 21   FAELHACSAYSFLRGASSPAEMVDSAAELGLEALALVDRDGVYGAVQFAEAAADSGIATI 80

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +    +       K        + +L   AEGY+RL  ++S  ++    K  VR
Sbjct: 81   FGAELTLTPSVSSSQPASSKNER----ILTVLCRGAEGYRRLSRVISDAHMCTGEKNEVR 136

Query: 131  I-CLSWLQEIGTEGLIMLTGGSSGP-IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
               L  L   G +  I+L   S  P +D         V E           DRL V    
Sbjct: 137  YPSLDELARRGGDHWIILADYSWTPYLDELVEHFPRVVVEL----------DRLLVPDD- 185

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD---- 244
                DR+ E    QL    +L L A  +S   +          +A A + +  +KD    
Sbjct: 186  ---ADRHEE----QLEAAEQLGLAAVYSSAATAARPKSGR---LAGAKTALRYRKDVEDA 235

Query: 245  RPRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             P   P    YL++ +EM    +D PE   NT+ +AR C+F L   AP LP +   E   
Sbjct: 236  EPYTHPIGGTYLRSGAEMFD--ADYPELTANTLAVARDCAFTLTTIAPELPDWPVPEGYT 293

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ--RLDFELNVIARMKFSGYFLIV 360
                 E+ +  +           GA+  G    ++    ++D ELNVI  + F GYFLIV
Sbjct: 294  EITWLEHMVEKR-----------GAVRYGSREDNHAAWAQIDHELNVIGGLNFPGYFLIV 342

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + + ++ NI +  GRGS A S   +AL IT++DP+   LLFERFL+P+R   PD D+
Sbjct: 343  TDLVDFCRRANI-LAQGRGSSANSAVCFALGITNVDPVAADLLFERFLSPEREGPPDIDL 401

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD---RLCK 477
            D    RR+EVI+Y  NKYG E  AQ+    + + + ALRD  RAL     ++D   R   
Sbjct: 402  DIESGRREEVIQYCYNKYGRENAAQVANVITYRRRGALRDAARALGYSSGRIDAWVRGLD 461

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
             +PND                            ++ ++ +L G  RH S H+ G+VI DR
Sbjct: 462  DVPND----------------------------VVTLADQLRGQPRHLSIHSGGMVICDR 493

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKV 596
            P++ +VP+      +  + Q++       GL+KFD LGL  L  +  ++D +   RG  V
Sbjct: 494  PIADVVPVEWARMENRSIIQWDKDDAASGGLVKFDLLGLGMLEAIHHAIDQVRDHRGRTV 553

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            +L  +  DD E Y +L     +G+FQ+ES     AL  ++P    D++  V+L RPGPI 
Sbjct: 554  NLWQLGLDDPEVYAMLARADAVGVFQVESRAQMSALPRLKPREFYDLVVQVALIRPGPIQ 613

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
               V  Y  R+NG+E +   HP +   L +T GV ++QEQVM++A   +G++  EAD LR
Sbjct: 614  GGSVHPYIRRRNGEEAVTFDHPCLKDALAKTLGVPLFQEQVMRVAVDAAGFTPVEADALR 673

Query: 715  RAMG-KKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RAMG K+  ++M++  ERF  G   K+G+ +     +++ +  FA YGF +SHA ++A I
Sbjct: 674  RAMGAKRSAKKMEQLHERFARGCREKHGMDEATITTLWKKIIAFAAYGFPESHAQSFASI 733

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW K +YP EF  A +  +       +    DAR+  ++I+P  VN   V+    D
Sbjct: 734  VYFSAWFKRYYPAEFCVALLRAQPMGFYSPQSLIADARRHGVEILPIDVNHSDVEANAID 793

Query: 833  ---------NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVL 882
                     N +   L A+KG+G   A+ +++A AD  PF  + D   R     ++   +
Sbjct: 794  NPDLEPGAPNSLRLGLDAVKGLGARGAKAVVQARADGGPFTRIADLSRRA---GISVSQV 850

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-GTFSDKITLE 941
            E+L  AGAL   G  R + L           W           I AHE+ G       + 
Sbjct: 851  EALATAGALRSMGIDRREGL-----------WA--------AGIAAHERPGMLPGMSEIS 891

Query: 942  KFSVENSSVRFE---NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
              S+   S  FE    +    G     HP+++ +  L   GI    +  +      + +A
Sbjct: 892  IPSLPGMSA-FELAAADIASTGITADIHPVELLRKHLDNAGIISIRQLASCEDSTRVTVA 950

Query: 999  AMVVSKQQKKTRKG 1012
              V  +Q+  T  G
Sbjct: 951  GTVTHRQRPGTAGG 964


>gi|108804744|ref|YP_644681.1| DNA polymerase III subunit alpha [Rubrobacter xylanophilus DSM 9941]
 gi|108765987|gb|ABG04869.1| DNA polymerase III, alpha subunit [Rubrobacter xylanophilus DSM 9941]
          Length = 1084

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 316/1050 (30%), Positives = 494/1050 (47%), Gaps = 89/1050 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL   S +S   G  +   +    A     A+A+TD + L+           AG+ P
Sbjct: 3    GFAHLHARSGFSYGFGVATPEELAGAAARMGMWALALTDRDGLYGVPRLLAACEGAGVSP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G ++ ++   +                +VLL +  EGY+ L  L++      + ++  
Sbjct: 63   IVGAEVGMEEGGH----------------VVLLAAGMEGYRSLSRLITAYRCSSEDRRRP 106

Query: 130  RICLSWLQEIGTEGLIMLTGGSS-GPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQ 187
               L  L E   EGL+ LTG    G + R       + A K +   ++ FG   ++  L 
Sbjct: 107  VCPLPVLLEH-AEGLVCLTGAVPFGLLPRLVLSGREKQARKVVGLLREAFGAAGVFAELS 165

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
              R    R R ++V   A    LP+VATN + +L  ED+  H+VL+A ++ T +      
Sbjct: 166  DDRTAGSRRRMARVAAFARECGLPVVATNEAAYLRPEDHRLHEVLVAASNLTRLPGPGY- 224

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL----QVHAP--ILPRFIEKEC 300
            R T   +LK    M  +F   PEAL N   +A RC+  +    +VH P  +LP       
Sbjct: 225  RPTDQLWLKPPGAMRRLFEGYPEALANAALVAERCAGSVRLSGKVHMPAAVLP------- 277

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E E     +A L   + +GA  + G       +RL  EL  I  +  + YFLI
Sbjct: 278  -------EGETAEGRLARL---VGEGARRRYGRPGDRVWRRLRRELACIGALGHAAYFLI 327

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
              +  + A++  +PV  GRGS A S+ AY L +T  +PL   LLFERFL+  R   PD D
Sbjct: 328  AHEAKEIARERGVPVS-GRGSAANSMVAYCLGLTSPEPLGNRLLFERFLHEGRKDPPDID 386

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +D   + RD V   +  +YG    A   T  ++  + A+R   RAL  P  ++DRL + +
Sbjct: 387  LDLDSELRDGVRNELMGRYGRHGAAVAATAETMSLRGAVRVAARALGHPPEEIDRLSRHV 446

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSV-----------DRLLEISQKLEGLYRHASTH 528
            P        + A  D   + EA L +P++             LLE+S +L G    A TH
Sbjct: 447  PARFRDRDRVYAGIDG--WEEA-LREPAMRGHPLRDRRRHRLLLELSARLCGRLWQAGTH 503

Query: 529  AAGIVIG--DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
              G+V G  +R LS+LVP+    +  L   Q++   +E  GL K D LGLK  T L+K+ 
Sbjct: 504  NGGVVFGTAERHLSELVPLEPSGKEGLLRCQYDKDDLEYVGLPKLDLLGLKMHTALRKAG 563

Query: 587  DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            +  + R G +VD   +P  D  TY L+ T  T GIFQLES G       ++P    D++A
Sbjct: 564  ELASARLGEEVDPYALPPGDGATYALIRTGRTAGIFQLESPGQMSLSTRLKPRRFPDLVA 623

Query: 646  LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
             VSL+RPGP+  D +  Y NR+NG+E        ++P+L+ T GV+++QEQV+++   ++
Sbjct: 624  QVSLFRPGPVRGDLVTPYVNRRNGREPYTVPLEELEPVLRPTYGVMVFQEQVLEVCHRVA 683

Query: 704  GYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            G+SL+E D++RRAM + +    M + +ERF+  A   G+ +  A  +FE +  F+ YGF+
Sbjct: 684  GFSLAEGDLVRRAMTRARGPGAMRELRERFVGSAVGRGVPREKAEEVFEWMEGFSVYGFS 743

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
             +H A++A I+Y +A+M+ HYP EF    +  +       +    +AR+  + ++PP ++
Sbjct: 744  AAHGASFAEIAYASAYMRVHYPAEFFCGLLNSQPMGFYSPRVLLNEARRAGLSVLPPDIH 803

Query: 823  TPCVDFKV-GDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                 F V GD   +   L+  KG+       I+     +PF S  D   R     + R 
Sbjct: 804  LSGEGFTVEGDGTALRVGLSYCKGLSERAIASIVSEREREPFASAADLYRRT---AVERD 860

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI-FAHEKGTFSDKIT 939
             L  ++ AG LD  G  R +LL     +       EK R    E I  AH    ++++ T
Sbjct: 861  SLRDMIRAGFLDALG-DRGRLLGEAGRLP------EKRRRGDQEEIPPAHPASWWAERET 913

Query: 940  LEKFS-------VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                         E++  R E E  VLG     HPL+ Y+  LR++G+   EE+     G
Sbjct: 914  RGGGDAPVGLPLAEDARERMEWE--VLGLNVRRHPLEPYRAALRELGVVPSEEAKGLAHG 971

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
              +R+A ++   Q   TR G  + W    E
Sbjct: 972  RRVRVAGLIECLQHPPTRSGHPV-WFLLIE 1000


>gi|194366156|ref|YP_002028766.1| error-prone DNA polymerase [Stenotrophomonas maltophilia R551-3]
 gi|194348960|gb|ACF52083.1| DNA polymerase III, alpha subunit [Stenotrophomonas maltophilia
            R551-3]
          Length = 1036

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 303/1036 (29%), Positives = 478/1036 (46%), Gaps = 99/1036 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S   GA     +  + A     A+AITD  +L   +   Q A   G+ 
Sbjct: 6    PGYAELHCLSAFSFQRGASIAEELFARAAGQGYRALAITDECSLAGIVRAWQAAKTHGVA 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  ++                  P + LL +    Y  L +L++        +++
Sbjct: 66   LIVGAEFQVE----------------DGPKLALLCTDQAAYAGLCQLITTCR-----RRA 104

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +     L+E        L       +DR       Q A   L   +  F DRL++ ++ 
Sbjct: 105  AKGEYRCLREDLLGLPDGLLCLW---LDR-------QPAAIDLELLRAGFDDRLWLAVEL 154

Query: 189  HRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H  +D  R  Q +Q     H LPLVA+ +            D L A+ H   V++    R
Sbjct: 155  HHEHDDARRLQQLQAFGERHRLPLVASGDVHMHVRRRRALQDTLTAIRHRCSVAEAGW-R 213

Query: 248  VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            + P  + +L+ R+ +  ++    E L  T+ IA RC F L+      PR +  E  D   
Sbjct: 214  LFPNGERHLRPRTALAQLYPS--ELLAETLRIAERCHFTLEQLQYTYPRELVPEGHD--- 268

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              ++ LR     G+  R       KG      R++++ EL +I    ++ YFL V D ++
Sbjct: 269  -PDSWLRVLVERGIPWRW------KGGIEPAQRKQIEHELALIREKNYASYFLTVQDIVR 321

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S   + L +T+IDP R +LLFERF++ +R   PD DIDF  +
Sbjct: 322  FARSQDI-LCQGRGSAANSAVCFVLGVTEIDPARSNLLFERFISAERDEPPDIDIDFEHE 380

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV++YV  +YG ER A      S + ++A+RDV RAL +P  QV+ L   + +   H
Sbjct: 381  RREEVLQYVFKRYGRERAALTAVAISYRGRSAIRDVARALGLPMDQVNELGAAMDHWGGH 440

Query: 486  ---PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               P +L+    D          P + RLL ++ +L    RH S H  G VI + PLS L
Sbjct: 441  VPLPETLRERGFDPE-------TPLMRRLLALTAELIDFPRHLSQHPGGFVISEHPLSTL 493

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-LSLI 601
            VP+     +D  V Q++   ++  GL+K D L L  LT ++K L  L Q G+    +  I
Sbjct: 494  VPVENAAMADRTVIQWDKDDLDATGLMKVDCLALGMLTAIRKCLAMLQQHGLHSGRMDAI 553

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
              DD  TY ++    T+G+FQ+ES      L  +QP    D++  V++ RPGPI   +V+
Sbjct: 554  EDDDKPTYDMICAADTIGVFQIESRAQMAMLPRLQPREFYDLVIEVAIVRPGPIQGDMVH 613

Query: 662  NN-------RKNGKEKIVSI-HPLIDPMLK----ETQGVIIYQEQVMQIAQLLSGYSLSE 709
                     R+ G + +    +PL  P LK     T GV ++QEQVMQ+A   +GY+  E
Sbjct: 614  PYLERRRLLREQGPDALNDPDNPLYPPQLKRVFARTLGVPLFQEQVMQLAVDAAGYTPGE 673

Query: 710  ADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD LRR+M   K +  ++  +E+ ++G  KN  S+    ++FE +  F DYGF +SHAA+
Sbjct: 674  ADALRRSMAAWKRRGGLEPHREKLLAGMLKNNFSREYGEHLFEQIKGFGDYGFPESHAAS 733

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV---NTPC 825
            +A+++Y + W+K HYP  F A+ +  +        +  QDAR+  I+++P  V   +  C
Sbjct: 734  FALLTYASCWLKCHYPAAFTASLINSQPLGFYSPDQLLQDARRHGIRVLPVDVRHSDWDC 793

Query: 826  -VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
             +DF  G   I   L  + G      R IM   A +PFD + D C R     L+RR    
Sbjct: 794  TLDFSKGPAAIRLGLRLVDGCNEPAVRAIMRERARRPFDDVGDLCQRT---ALDRRQQGL 850

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  AGA           L+ L   +  A+W      N+   +F   + T   ++ L   S
Sbjct: 851  LADAGA-----------LRGLSGHRHRARWDISGVENR-LPLFDQARATAEARVPLPLPS 898

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + + R  G     HP+   +  LR  G     +      G  +R+A +V  +
Sbjct: 899  AWED---MQADYRSTGTTLGRHPISFLRAQLRSRGCLDAAQLAGHGHGRRVRIAGLVRMR 955

Query: 1005 QQKKTRKGSRIGWVTF 1020
            Q+ +T  G     VTF
Sbjct: 956  QRPQTASG-----VTF 966


>gi|296129882|ref|YP_003637132.1| DNA polymerase III, alpha subunit [Cellulomonas flavigena DSM 20109]
 gi|296021697|gb|ADG74933.1| DNA polymerase III, alpha subunit [Cellulomonas flavigena DSM 20109]
          Length = 1173

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 314/1116 (28%), Positives = 500/1116 (44%), Gaps = 143/1116 (12%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L  HS++S L+GA     +  + A   Q A+A+TD + L+  + F+Q A A G+ 
Sbjct: 30   PRYAELHAHSAFSFLDGASQPEELAAEAARLGQSALALTDHDGLYGVVRFAQAARAVGLP 89

Query: 69   PIIGCQLDIDMQDNLKMTNQGK-TPFPTV---PS---------IVLLVSTAEGYQRLIEL 115
             + G +L +   D  +   + + TP P V   P+         +++L   A+GY+ L   
Sbjct: 90   TVFGAELHLPAPDPRRHPREKRPTPGPPVLDAPTGVPDPRASHLLVLARGADGYRALSRA 149

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS----------- 164
            ++  +L    K +    L  L E      ++LTG   G + RA                 
Sbjct: 150  IAEGHLRTGRKGAAEYHLEELAEAAAGQWLVLTGCRKGAVRRALAGGDPSGVLGVAPGGI 209

Query: 165  QVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
            + A   L     LFG D + V    H   YD  R   +  LA    LPLVAT N  + +E
Sbjct: 210  EAARTELDRLVALFGRDNVAVETTMHGDAYDTDRADALATLAADARLPLVATGNVHYATE 269

Query: 223  EDYEAHDVLMAVAHSTVVSQKDR--PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
             D +    L AV   + +   D   P   P  +L++ +EM+ +    P A+    ++A  
Sbjct: 270  RDADLALALAAVRARSSLDDLDGWLPGA-PVAHLRSAAEMLHLHRRHPSAVTTAADLAAE 328

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEE--NELRNKAVAGL----EVRLAQGAIAKGYHA 334
            C+F L + AP LP +      D   E     EL  +  A L    +     GA A+    
Sbjct: 329  CAFDLSLVAPSLPPY---PVPDGHTEATWLRELVRRGAAELYGPPDAERVPGAYAQ---- 381

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
                  L+ EL VI  + F GYFL+V D + + ++  I +  GRGS A S   Y L +T 
Sbjct: 382  ------LEHELRVIEDLGFPGYFLVVYDLVDFCRRQGI-MAQGRGSAANSAVCYVLRVTA 434

Query: 395  IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
            +DP++  LLFERFL P+R   PD D+D    RR+EVI++V   +G    AQ+    S + 
Sbjct: 435  VDPVKHGLLFERFLAPERDGPPDIDVDIESARREEVIQHVYATHGRSHAAQVANVISYRP 494

Query: 455  KAALRDVGRALQMPYSQVD----------------------RLCKLIPNDPAHPVSLQAI 492
            ++A+RD  RAL     Q D                       L +  P  P   V+    
Sbjct: 495  RSAVRDAARALGYDAGQQDAWSTSIERWGSLRGPEKPSAWWHLTRSGPVGPGSEVAGMPT 554

Query: 493  ADDSRFREARL------ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            AD+      RL      A+   + +++++++   L RH   H+ G+V+ DRP+ ++ P+ 
Sbjct: 555  ADNHDVVPTRLPPSAAEAEEIPEHVIDLAERFLRLPRHLGIHSGGMVMCDRPVIEVCPVE 614

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDD 605
                    V Q++ +    AGL+KFD LGL  LT L+ +  +     GV +DL  +P +D
Sbjct: 615  WARMEGRTVLQWDKEDCADAGLVKFDLLGLGMLTALRLAFTEVEKHEGVTLDLHGLPHED 674

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
               Y LL+   T+G+FQ+ES      L  ++P    DI+  V+L RPGPI    V+   N
Sbjct: 675  PAVYELLSAADTVGVFQVESRAQMGTLPRLRPSTFYDIVVEVALIRPGPIQGGSVHPFIN 734

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIK 722
            R  G+E +  +HPL++  L +T GV ++QEQ+MQ+A  ++ ++ +EAD LRRAMG K+  
Sbjct: 735  RAKGREPVTYLHPLLEKSLGKTLGVPLFQEQLMQMAIDVADFTPAEADQLRRAMGSKRSM 794

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E M+  + R + G + NGI   +   IF+ L  FAD+GF +SHA ++A + Y ++W+K H
Sbjct: 795  ERMEAIRSRLMEGMAANGIGSQVREQIFDKLKAFADFGFPESHAYSFAFLVYASSWLKVH 854

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV--------------------- 821
            +P  F A  +  +       +    DAR+  I+++ P V                     
Sbjct: 855  HPAAFYAGLLAAQPMGFYSPQSLAADARRHGIEVLRPDVLASEVLAVVERLGPPPHGGEP 914

Query: 822  ----------NTPCVDFKVGDNRIYY-----SLAAIKGVGTTTARHIMEA-SADKPFDSL 865
                       T  V  + G+  +        L  ++ +G   AR +++A +AD PF  L
Sbjct: 915  RLVPQPSGTGPTRPVGVRTGEGSVRTLAVRQGLTQVRTIGEDVARALVDARTADGPFTDL 974

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
            +D   RV    L    +E+L  AGALD  G  R   L +   + +             + 
Sbjct: 975  QDLVRRV---HLTTAQIEALATAGALDSLGVDRRSGLWAAGALAQEGP----------DT 1021

Query: 926  IFAHEKGTFSDKIT-LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            +     G  +  +  L    V  + V         G     +P    +  L   G+   E
Sbjct: 1022 LPGVAVGVKAPALPGLSGVEVATADV------WATGVSVDSYPTQFVRDGLDAAGVLTVE 1075

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            ++  T  G  + +A +V  +Q+  T +G     VTF
Sbjct: 1076 QAFRTEEGRRVAVAGVVTHRQRPGTAQG-----VTF 1106


>gi|221215348|ref|ZP_03588313.1| error-prone DNA polymerase [Burkholderia multivorans CGD1]
 gi|221164780|gb|EED97261.1| error-prone DNA polymerase [Burkholderia multivorans CGD1]
          Length = 1049

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 309/1034 (29%), Positives = 491/1034 (47%), Gaps = 97/1034 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AAG+ 
Sbjct: 10   PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAAGLP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL--LVSTAEGYQRLIELVSRMYLLDQGK 126
             IIG    +   D               P+I    L    +GY  L ELVS +  +   K
Sbjct: 70   LIIGSHFRLTAADG-------------SPAIAFSALAMNRDGYGNLCELVS-LGRMRGKK 115

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             S R+    L++       +        I    F  + Q  + ++  F ++FGDR +V L
Sbjct: 116  GSYRLAPRDLEQPDAPFTHLRGLPDCIAILSPDFPANEQRLDAQVEWFARVFGDRAWVAL 175

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H R  D      V ++A  H +P+VAT+  L          DVL ++     VS+   
Sbjct: 176  TLHARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTSIRLGRPVSECGY 235

Query: 246  PRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              + P  + +L++R  + +++     ALE TV +ARRC+F L               DD+
Sbjct: 236  -ELAPNAERHLRSRLRLANLYP--AGALEETVRVARRCTFSL---------------DDL 277

Query: 304  QKEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            + E  +E           LR +   G + R   G         D + +++ EL +IA + 
Sbjct: 278  KYEYPDEVVPAGYDVATYLREQTYIGAQRRFPAGIPV------DVQAQIEHELQLIAELN 331

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            +  YFL V D +Q+A++N I +  GRGS A S   Y L +T++DP R S+LFERF++ +R
Sbjct: 332  YEAYFLTVYDIVQFARQNGI-LCQGRGSAANSAVCYCLGVTEVDPSRQSMLFERFMSKER 390

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
               PD D+DF   RR+EV++Y+  KYG +R A      + + ++ALR+ G+AL +  + V
Sbjct: 391  NEPPDIDVDFEHQRREEVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDPAIV 450

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV---DRLLEISQKLEGLYRHASTHA 529
            DR+ K      +    LQ      RF EA L DP      +    + +L G  RH S H+
Sbjct: 451  DRVAKSHHWFDSRADLLQ------RFAEAGL-DPEAPLNQQWAAFAAQLLGYPRHLSQHS 503

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G VI    L++LVP+      D  + Q++   IE  G++K D L L  L++++++LD +
Sbjct: 504  GGFVISRGKLTRLVPVENAAMEDRTIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMI 563

Query: 590  AQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            ++ RG   +L  IP +D  TY +L    ++G+FQ+ES      L  ++P C  D++  V+
Sbjct: 564  SEKRGETFELQDIPSEDKATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVA 623

Query: 649  LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            + RPGP+   +V  Y  R+ G E +      ++  LK T GV I+QEQVMQ+A L +G+S
Sbjct: 624  IVRPGPVQGGMVHPYLRRRQGLEPVTFPSDGMEKALKRTLGVPIFQEQVMQVAMLAAGFS 683

Query: 707  LSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
              EAD LRRAM   K K  ++   +R +SG  + G  +  A  IF  +  F +YGF +SH
Sbjct: 684  AGEADQLRRAMAAWKRKGGLEPYHDRLVSGMLERGYDREFAEAIFAQIKGFGEYGFPESH 743

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AA++A++ Y +AW++ H P  FLAA +  +        +  QDAR+  ++++P  VN   
Sbjct: 744  AASFALLVYSSAWLRRHEPAVFLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVST 803

Query: 826  VDFKV------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
             D  +         R+ +SL  ++G+    A  I  A A +PF  + D   R    +L+R
Sbjct: 804  WDSVIEGPTTSAPVRLGFSL--LRGMRADVAGRIELARAVRPFVDVADLARRA---QLDR 858

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
              L+ L  A AL           +SL    + A            ++    +GT  D   
Sbjct: 859  HDLQVLARANAL-----------RSLAGGNRRAALWLAAAAIPDRDLL---RGTERDD-A 903

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLA 998
            +      +       + R +GF    HPL + +  L    ++  E+ +AT+R G   R  
Sbjct: 904  VPALPQASEGKEIVTDYRAMGFTLGRHPLALLRDRLTLDRLQSAEQ-LATLRSGQLARAC 962

Query: 999  AMVVSKQQKKTRKG 1012
             +V  +Q+  T  G
Sbjct: 963  GLVTVRQRPGTANG 976


>gi|330822180|ref|YP_004351008.1| DNA polymerase III, alpha subunit [Burkholderia gladioli BSR3]
 gi|327374332|gb|AEA65685.1| DNA polymerase III, alpha subunit [Burkholderia gladioli BSR3]
          Length = 1049

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 308/1030 (29%), Positives = 482/1030 (46%), Gaps = 89/1030 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQ  S++S L GA     ++++ A     AIAITD  +L   +    +A AAG+ 
Sbjct: 10   PAYAELQCASNFSFLHGASRAEELVERAARLGYSAIAITDECSLAGVVRAHMEAKAAGLP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG         + ++T    +P     +   L    EGY  L EL++ +      K +
Sbjct: 70   LIIG--------SHFRLTAGDGSP---ALAFTALAMNREGYGNLCELIT-LGRTRAAKGT 117

Query: 129  VRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L+  E   E L  L       I    F  + Q  + +L    ++FGDR  V L
Sbjct: 118  YRLAPMDLEHPEAPLEHLRSLP--DCMIIVTPDFPANEQRLDAQLEWAARVFGDRARVAL 175

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H R  D      V + A  H++P+VAT+  L          DVL  +     V +   
Sbjct: 176  TLHARAMDDIHRGAVERAAARHDVPVVATSWPLMHVRSRKPLQDVLTGIRLGRSVGECGY 235

Query: 246  PRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              + P  + +L++R  + +++     ALE TV IA+RC+F L               D++
Sbjct: 236  -ELAPNAERHLRSRLRLANLYP--AGALEETVRIAQRCTFSL---------------DEL 277

Query: 304  QKEEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            + E  +EL           R +   G   R   G I     AQ     ++ EL +IA +K
Sbjct: 278  RYEYPDELVPAGYTPASYLREQTYIGAHGRFPNG-IPFNVQAQ-----IEHELQLIAELK 331

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            +  YFL V D +++A+  NI +  GRGS A S   Y L +T++DP R ++LFERF++ +R
Sbjct: 332  YEPYFLTVYDIVRFARSQNI-LCQGRGSAANSAVCYCLRVTEVDPARGNMLFERFISKER 390

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
               PD D+DF   RR+EV++Y+ +KYG +R A      + + + ALR+ G+AL +    V
Sbjct: 391  NEPPDIDVDFEHQRREEVMQYIYSKYGRDRAALTAAVSTYRPRGALREAGKALGVDPIIV 450

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAA 530
            DR+ K      AH          +RF EA L    P   +    +  L G  RH S H+ 
Sbjct: 451  DRVAK------AHHWFDSKADLLARFAEAGLDVEAPMNQQWAAFATALLGYPRHLSQHSG 504

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G VI    LS++VP+      D  + Q++   IE  GL+K D L L  L++++++L+ ++
Sbjct: 505  GFVISRTKLSRMVPIENAAMEDRTIIQWDKDDIEALGLLKIDVLALGMLSMVRRALEMIS 564

Query: 591  Q-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            + RG   +L  IP +D  TY +L    ++G+FQ+ES      L  +QP C  D++  V++
Sbjct: 565  EKRGEAFELQDIPAEDAATYEMLCHGDSMGVFQVESRAQMSMLPRLQPRCFYDLVIEVAI 624

Query: 650  YRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             RPGP+   +V+    R+ G E +    P ++  LK T GV I+QEQVMQ+A L +G+S 
Sbjct: 625  VRPGPVQGGMVHPFLRRRQGLEPVTFPSPDVEKALKRTLGVPIFQEQVMQVAMLAAGFSA 684

Query: 708  SEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             EAD LRRAM   K K  ++   ER ++G    G  +  A  IF  +  F DYGF +SHA
Sbjct: 685  GEADQLRRAMAAWKRKGGLEPYHERLVNGMLARGYDRDFAEAIFAQIKGFGDYGFPESHA 744

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A++A++ Y +AW++ H P  FLAA +  +        +  QDAR+  ++++P  V T   
Sbjct: 745  ASFALLVYASAWLRRHEPAVFLAALLNSQPMGFYTPSQLIQDARRRGVEVLPVDVTTSTW 804

Query: 827  DFKV-GDNR---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
            D  + GD     +   ++ I G+    A  I  A A +PF  + D   R     L+R  L
Sbjct: 805  DSVLEGDTTAAPVRLGMSLISGMRVEAAERIQLARAVRPFVDVADLARRA---ALDRHDL 861

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
              L  A AL                 ++ A W         + +   E+    D+     
Sbjct: 862  TVLAHASALRSLAKGN----------RRNAIWTAAAAVPDKDILRGTER---DDEAPALP 908

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             + E S +    + R +GF    HPL++ +  LR   +    E      G   R   +V 
Sbjct: 909  QASEGSEI--VTDYRAMGFTLGRHPLELLRDRLRADRLLPARELAQLRNGQFARACGIVT 966

Query: 1003 SKQQKKTRKG 1012
             +Q+  T KG
Sbjct: 967  VRQRPGTAKG 976


>gi|161506601|ref|YP_001573722.1| DNA polymerase III, alpha subunit [Burkholderia multivorans ATCC
            17616]
 gi|189348876|ref|YP_001942071.1| DNA polymerase [Burkholderia multivorans ATCC 17616]
 gi|160346839|gb|ABX19922.1| DNA polymerase III, alpha subunit [Burkholderia multivorans ATCC
            17616]
 gi|189339014|dbj|BAG48081.1| DNA polymerase [Burkholderia multivorans ATCC 17616]
          Length = 1049

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 308/1034 (29%), Positives = 491/1034 (47%), Gaps = 97/1034 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AAG+ 
Sbjct: 10   PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAAGLP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL--LVSTAEGYQRLIELVSRMYLLDQGK 126
             IIG    +   D               P+I    L    +GY  L ELVS +  +   K
Sbjct: 70   LIIGSHFRLTAADG-------------APAIAFSALAMNRDGYGNLCELVS-LGRMRGKK 115

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             S R+    L++       +        I    F  + Q  + ++  F ++FGDR +V L
Sbjct: 116  GSYRLAPRDLEQPDAPFTHLRGLPDCIAILSPDFPANEQRLDAQVEWFARVFGDRAWVAL 175

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H R  D      V ++A  H +P+VAT+  L          DVL ++     VS+   
Sbjct: 176  TLHARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTSIRLGRPVSECGY 235

Query: 246  PRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              + P  + +L++R  + +++     ALE TV +ARRC+F L               DD+
Sbjct: 236  -ELAPNAERHLRSRLRLANLYP--AGALEETVRVARRCTFSL---------------DDL 277

Query: 304  QKEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            + E  +E           LR +   G + R   G         D + +++ EL +IA + 
Sbjct: 278  KYEYPDEVVPAGYDVATYLREQTYIGAQRRFPAGIPV------DVQAQIEHELQLIAELN 331

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            +  YFL V D +Q+A++N I +  GRGS A S   Y L +T++DP R S+LFERF++ +R
Sbjct: 332  YEAYFLTVYDIVQFARQNGI-LCQGRGSAANSAVCYCLGMTEVDPSRQSMLFERFMSKER 390

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
               PD D+DF   RR+EV++Y+  KYG +R A      + + ++ALR+ G+AL +  + V
Sbjct: 391  NEPPDIDVDFEHQRREEVMQYIYRKYGRDRAALTAAVSTYRPRSALREAGKALGVDPAIV 450

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV---DRLLEISQKLEGLYRHASTHA 529
            DR+ K      +    LQ      RF EA L DP      +    + +L G  RH S H+
Sbjct: 451  DRVAKSHHWFDSRADLLQ------RFAEAGL-DPEAPLNQQWAAFAAQLLGYPRHLSQHS 503

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G VI    L++LVP+      D  + Q++   IE  G++K D L L  L++++++LD +
Sbjct: 504  GGFVISRGKLTRLVPVENAAMEDRTIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMI 563

Query: 590  AQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            ++ RG   +L  IP +D  TY +L    ++G+FQ+ES      L  ++P C  D++  V+
Sbjct: 564  SEKRGETFELQDIPAEDKATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVA 623

Query: 649  LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            + RPGP+   +V  Y  R+ G E +      ++  LK T GV I+QEQVMQ+A L +G+S
Sbjct: 624  IVRPGPVQGGMVHPYLRRRQGLEPVTFPSDGMEKALKRTLGVPIFQEQVMQVAMLAAGFS 683

Query: 707  LSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
              EAD LRRAM   K K  ++   +R +SG  + G  +  A  IF  +  F +YGF +SH
Sbjct: 684  AGEADQLRRAMAAWKRKGGLEPYHDRLVSGMLERGYDREFAEAIFAQIKGFGEYGFPESH 743

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AA++A++ Y +AW++ H P  FLA+ +  +        +  QDAR+  ++++P  VN   
Sbjct: 744  AASFALLVYSSAWLRRHEPAVFLASLLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVST 803

Query: 826  VDFKV------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
             D  +         R+ +SL  ++G+    A  I  A A +PF  + D   R    +L+R
Sbjct: 804  WDSVIEGPTTSAPVRLGFSL--LRGMRADVAGRIELARAVRPFVDVADLARRA---QLDR 858

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
              L+ L  A AL           +SL    + A            ++    +GT  D   
Sbjct: 859  HDLQVLARANAL-----------RSLAGGNRRAALWLAAAAIPDRDLL---RGTERDD-A 903

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLA 998
            +      +       + R +GF    HPL + +  L    ++  E+ +AT+R G   R  
Sbjct: 904  VPALPQASEGKEIVTDYRAMGFTLGRHPLALLRDRLTLDRLQSAEQ-LATLRSGQLARAC 962

Query: 999  AMVVSKQQKKTRKG 1012
             +V  +Q+  T  G
Sbjct: 963  GLVTVRQRPGTANG 976


>gi|182415861|ref|YP_001820927.1| DNA polymerase III, alpha subunit [Opitutus terrae PB90-1]
 gi|177843075|gb|ACB77327.1| DNA polymerase III, alpha subunit [Opitutus terrae PB90-1]
          Length = 1116

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 280/933 (30%), Positives = 455/933 (48%), Gaps = 64/933 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +V L   S++S L GA    ++  + A    PA+AI D + +++A    Q A    ++ I
Sbjct: 10  YVELHASSAFSFLRGASQPEDLAAEAARLGLPALAIADRDGVYAAARLYQAARELQLRAI 69

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA----------EGYQRLIELVSRMY 120
           +G ++ ++    L +     T +    ++  L+STA          E ++R   LV+   
Sbjct: 70  VGAEVTLEDGTALPLLVTNGTGYA---NLCRLISTAKLEPREAAVVEAWRREHPLVTPAD 126

Query: 121 LLDQGKQSVRICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             +  +   R C +  +E+    EGLI LTG   GP+  A+    +  A       + +F
Sbjct: 127 SHEDPRARKRPCFATWRELAEHAEGLIALTGDEDGPVLSAWRNRGADAAAAVAARLQTIF 186

Query: 179 G-DRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
           G DRLYV LQR R   R  ++ +     LA   +LPL+AT    + +  +    DV   +
Sbjct: 187 GADRLYVELQRRR--QRGEDTALCFLADLAAARQLPLLATGGVRYATRAERPIADVFTCL 244

Query: 235 AHSTVVSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
              T +    R  ++P  + +L++   M  +F D PEA+ N++ +A R  F LQ      
Sbjct: 245 REHTTLDAAGR-LLSPNAERHLRSGRAMAELFQDYPEAVVNSLRLAERLDFTLQNLDYRF 303

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           P F     + +    E+ LR +  AG   R+       G      R +LD EL +I ++ 
Sbjct: 304 PDFPVGPGETM----ESVLREQTYAGARERI-------GELTPKLRAQLDRELAMINKLG 352

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           F GYFLIV D  QW  +  I +  GRGS A S   YAL IT ++PLR+ LLFERFL+  R
Sbjct: 353 FPGYFLIVWDICQWCHQRGILI-QGRGSAANSAVCYALGITAVNPLRYRLLFERFLSEGR 411

Query: 413 M------SMPDFDIDF-CQDRRDEVIRYVQNKY---GHERVAQIITFGSLQAKAALRDVG 462
           +      S PD D+D    D R+ VI+ +  +Y   G   VA +IT+   + ++A R++G
Sbjct: 412 VGKDGHPSWPDIDLDLPSGDLRESVIQEIYQRYAPRGAAMVANVITY---RGRSAAREIG 468

Query: 463 RALQMPYSQVDRLCKLIPN-DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
           + L +P   +DR   L  N D  H + L   A   +        P +  +L + ++++GL
Sbjct: 469 KVLGLPGDVLDRFSALYANGDFPHTLDL---AQQVKLSGLPGGHPRLPAMLALYRQMQGL 525

Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
            RH   H+ G+V     L ++VP+         V Q++    E+ GL+K DFLGL  + +
Sbjct: 526 PRHLGQHSGGMVFCPNRLDRVVPIENASMEGRRVVQWDKDDCEELGLVKVDFLGLGMMAV 585

Query: 582 LQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
           LQ +     QRG  + L  +P +D ET   +    T+G+FQ+ES   +  L  +QP    
Sbjct: 586 LQDAFALCTQRGEPLTLHTVPPEDPETLATIRRADTIGVFQVESRAQQATLPRLQPQNFY 645

Query: 642 DIIALVSLYRPGPIDNIVVYN--NRKNGKEKIV----SIHPLIDPMLKETQGVIIYQEQV 695
           D+   VS+ RPGPI   V +    R+ G+EK+V    S+  L+ P+L+ T GVI++QEQ+
Sbjct: 646 DVAIAVSIVRPGPIAGRVSHPLIKRRAGEEKVVYLDESVEHLMKPILERTWGVILFQEQM 705

Query: 696 MQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
           ++ A +L+G+S ++A+ LRRA G  +    + K  E+   G    G S+ +   + E   
Sbjct: 706 LETAMVLAGFSGAQAEELRRAFGFNRNTARLRKVVEQLQLGMRARGHSEAVVQKVLESST 765

Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
            FA YGF +SHA ++A+++Y + W+K H P EF A+ +  +           QDAR+  +
Sbjct: 766 TFAGYGFPESHAISFALLAYASTWLKVHRPAEFTASLLNNQPMGFYSPATLIQDARRHGL 825

Query: 815 QIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
           ++    V     +  V  D+ I   L  +KG+     R ++   A + F S++D+ +R  
Sbjct: 826 KVKAGCVQRSSWECTVEADDTIRIGLRYVKGLREANVRAMLAQRAARAFTSIDDWLARTS 885

Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                RR L ++   GAL      R   L  ++
Sbjct: 886 FSAAERRALAAV---GALRTLASHRRAALWQVE 915


>gi|226525340|gb|ACO70937.1| DNA polymerase III alpha subunit [uncultured Verrucomicrobia
            bacterium]
          Length = 1040

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 296/1020 (29%), Positives = 491/1020 (48%), Gaps = 80/1020 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++V L   S+ S L GA    +++ + A  + PA+A+ D + ++ +    +     G++ 
Sbjct: 12   TYVELHARSACSFLRGASHPESLVREAARLKLPALAVCDRDGVYGSARVHRDGKEHGVRA 71

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +L         M +Q   P        +LV+T  GY+ L ++++R  L  +G + +
Sbjct: 72   IVGAEL--------TMEDQSVVP--------VLVATRTGYRNLCQMITRAKL--RGTK-L 112

Query: 130  RICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNL 186
               + W  E+G  +EGL+ LTG   GP+ RA        A       +  FG   ++V +
Sbjct: 113  DAPVRW-DELGEFSEGLVALTGDEEGPVRRALASKDRAAAMAATERLRAAFGGHNVFVEI 171

Query: 187  QRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            QRH  RG +R  ++ +  LA    LPL+ATN  L  + E+    DV     H T +    
Sbjct: 172  QRHLHRGEERENDA-LADLAEATGLPLLATNGVLHATREERGVLDVFSCARHHTNLESGG 230

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R      + +LK+ + M  +F++ PEA+ NT  +A R  F L+      P+F     + +
Sbjct: 231  RHLAYNAERHLKSPARMARLFANHPEAIANTERLADRLEFSLENLGYEFPKFPVSPGETM 290

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFLIVA 361
                ++ L ++ + G   R         Y A   +   +L  EL +I R+ FSGYFLIV 
Sbjct: 291  ----DSVLYHRTMEGARNR---------YPAMTPKVLDQLHKELELITRLGFSGYFLIVW 337

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + + + +NI +  GRGS A S   YAL IT  DP+  +LLFERFL+  R + PD D+D
Sbjct: 338  DLVNFCRNDNILI-QGRGSAANSAVCYALGITACDPVAGNLLFERFLSEGRKTWPDIDLD 396

Query: 422  F-CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
                DRR+ VI+ V  +YG    A      + + ++A+R++G+AL      ++R  +L  
Sbjct: 397  LPSGDRRERVIQEVYRRYGRHGAAMTANVITFRGRSAMREIGKALNFAPDVLNRFSRLFG 456

Query: 481  N-DPAHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            N D  H + L A     + REA +    P     +E+ +K+ GL RH   H+ G++I   
Sbjct: 457  NGDFPHTMDLSA-----QLREAGIPPEHPRTKSAVELYRKIYGLPRHLGQHSGGMIICQG 511

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             LS +VP+         V Q++       G+IK D LGL  +  +Q SL+    R   VD
Sbjct: 512  ELSSVVPLENASMPGRVVAQWDKDDCHDLGIIKVDLLGLGMMAAMQDSLEMCQARDRPVD 571

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  TY L+    T+G FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 572  LATMPMDDPATYDLMCRADTIGTFQVESRAQMATLPRLRPQKFYDVVVEVAIIRPGPIQG 631

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             ++  Y  R  GKE +  IHP + P+L+ T GV ++QEQ++++A +++ +S SEA+ LRR
Sbjct: 632  GLLHPYLARHAGKEDVEYIHPDLKPVLERTLGVPLFQEQILKVAMVMADFSGSEAEDLRR 691

Query: 716  AMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            A+   + +E MD+   +  +G  + G+   I   I      FA YGF +SHA ++A+I+Y
Sbjct: 692  ALSFHRSQERMDQVCVKLRAGMVRKGVDPEIVDRIVHATQSFAVYGFPESHAISFALIAY 751

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833
             + WMK H   EF A  +  +           +DA++  ++    SV        VG D+
Sbjct: 752  ASCWMKVHRAPEFYAGLLNNQPMGFYSPATLVKDAKRRGLRTRAVSVLVSDWLCTVGDDD 811

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +   L  ++G+       I+     K F+SL DF  R    K   R L           
Sbjct: 812  TLRLGLCYVRGLTKEDGERIVAERQRKSFESLMDFQLRTAVPKPALRTL----------- 860

Query: 894  FGYSRMQLLQSLDNIQKYAQW-VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
               +++  L  L   ++ AQW VE  R  + +++FA E     +++ L+     +   R 
Sbjct: 861  ---AKIGALNGLSEHRRAAQWEVEIRR--EEDDLFARE--IREEELPLKPM---DPFERV 910

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +          HP+ + +  L  +  +  +  +A + G  + +  MV+ +Q+  T KG
Sbjct: 911  RADYAGTSLTTGPHPMALVRDRLPDL-WRAADLPLA-VNGQRLSIGGMVICRQRPGTAKG 968


>gi|145294807|ref|YP_001137628.1| error-prone DNA polymerase [Corynebacterium glutamicum R]
 gi|140844727|dbj|BAF53726.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1017

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 290/1010 (28%), Positives = 467/1010 (46%), Gaps = 94/1010 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   SSY+ L GA   ++++ +       A+++ D +  + A+ F++ A  AG+  +
Sbjct: 22   FAELHATSSYNFLTGASDPSDVVVQAKKLGLVALSVMDRDGFYGAVRFAEAAAEAGMHTV 81

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L   +Q+ +               + +L    EGY++L  L+S   +    K  VR
Sbjct: 82   YGAELS--LQEGV---------------LTVLCKNPEGYKKLSHLISDAKMATGEKGEVR 124

Query: 131  IC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               L  + E      ++L G     +D+  +      +E  +L F    G  +       
Sbjct: 125  YPPLPMVAEHAAGDWVVLAGFQW--LDKIDYVIDCFKSENIVLEF----GSTMTPEDADR 178

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLS-EEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              Y R  + +          P  A   S+ L+  +   AH + +A A S +      P  
Sbjct: 179  NEYLRRTQVKFQLRGILSTNPESAARASVRLAGAKQALAHKMSLADAESEL-----HPMG 233

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T   ++++   ++    D  + +  TVE+A  C+F L + AP LP++        +  E 
Sbjct: 234  T--TWMRSGDTLLKAHPDYADLIATTVELAAECAFTLDLVAPNLPKWDTPG----EHTEM 287

Query: 309  NELRNKAVAGLEVR-LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + L +     ++ R + + A  K   A     ++D+EL VI ++ F GYFLIV D +++ 
Sbjct: 288  SWLAHLVSTRIDTRYVGRSADIKARAAT----QIDYELGVIEKLGFPGYFLIVNDLVEFC 343

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            + +NI +  GRGS A S   + L IT+ +P+   LLFERFL+PDR   PD DID    RR
Sbjct: 344  RDSNI-LCQGRGSAANSAVCFVLGITNAEPISAGLLFERFLSPDRDGPPDIDIDIESGRR 402

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+YV  KYG +  AQ+    + + K A+RD  RAL  P    D   K     P    
Sbjct: 403  EEVIQYVYEKYGRDNAAQVANVITYRTKGAMRDAARALGYPQGAADAWAKGTSEPP---- 458

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                                 D +LE++ + +G  RH   H+ G+VI DRP++ +VP+  
Sbjct: 459  ---------------------DDVLELAAQFKGQPRHLGIHSGGMVICDRPIADVVPVEW 497

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                +  V Q++      AGL+KFD LGL  L  +   LD +A+ RG K++L  +   + 
Sbjct: 498  ARMDNRSVVQWDKDDCATAGLVKFDLLGLGMLEAIHHMLDLVAEHRGKKINLWELDLAEP 557

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
            E Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI    V  Y  R
Sbjct: 558  EVYDMLCKADAVGVFQVESRAQLSTLPRLKPRTFFDLVVEVALIRPGPIQGGSVHPYLRR 617

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKE 723
            + G+E I   HP+++  L +T G+ ++QEQ+MQ+A   +G+S  EAD LRRAMG K+  E
Sbjct: 618  RAGEEAITYDHPVLEKSLGKTLGIPLFQEQLMQVAVDAAGFSGGEADSLRRAMGSKRSPE 677

Query: 724  EMDKQKERFISG-ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             M   + RF  G    NGI    A  ++  +  FA YGF +SH+ ++A + Y +AW K H
Sbjct: 678  RMAALRSRFFQGLKDTNGIVGETAEKLWNKIVAFAAYGFPESHSQSFASLVYFSAWYKYH 737

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP EF    +  +       +    DAR+  + I+P +VN   V+    +  I   L  +
Sbjct: 738  YPAEFCVGLLRAQPMGFYSPQSLISDARRHGVSILPITVNDSGVEADAPNGAIRLGLNLV 797

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KG+G   A+ I +   + PFDS+ D   R D   LN   +E+L  AGA+DC G  R Q L
Sbjct: 798  KGLGHDAAQRIED---NAPFDSIPDLSRRAD---LNVAQVEALARAGAVDCLGVGRRQAL 851

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
                     A      +T     + A E          E  +   S+          G  
Sbjct: 852  WQ-------AGVAATEKTGMLPGLSAIEAPALPGMSAFELMATNISAT---------GVT 895

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
                P+ + +  + ++GI   +  +    G  +R+A +V  +Q+ +T  G
Sbjct: 896  ADYQPMALIRERMEELGIVPADRLLEVEDGTRLRIAGIVTHRQRPQTASG 945


>gi|77459371|ref|YP_348878.1| error-prone DNA polymerase [Pseudomonas fluorescens Pf0-1]
 gi|123604378|sp|Q3KBG7|DNAE2_PSEPF RecName: Full=Error-prone DNA polymerase
 gi|77383374|gb|ABA74887.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens Pf0-1]
          Length = 1025

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 315/1031 (30%), Positives = 489/1031 (47%), Gaps = 99/1031 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L   S++S   GA S   +  +       A+AITD   L   +   Q A +  +  
Sbjct: 4    GYAELHCLSNFSFQRGASSALELFQRAKKHGYQALAITDECTLAGIVRAWQAAKSVELPL 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ I+                  P +VLLV   EGYQ L  L+++     Q  Q  
Sbjct: 64   IIGSEIRIE----------------NGPKLVLLVENIEGYQALCGLITQARRRTQKGQ-- 105

Query: 130  RICLSWLQEIGTE---GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                  L+E  +E   GL++L    +  +D        +V E R L  K+ FG+RL++ +
Sbjct: 106  ---YQILREDFSEPLPGLLVLWVPEA--VD--------EVEEGRWL--KQTFGERLWLAV 150

Query: 187  QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q HRG  D+ R + ++ LA   ++P VA+ +    +       D + A+ H   V++   
Sbjct: 151  QLHRGQNDQQRLAALLSLADELQIPAVASGDVHMHARGRRALQDTMTAIRHHVPVAEAGL 210

Query: 246  PRVTPDHYLKNRSEMVSIFSDL-PEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R+ P+     RS  + +  +L P+ L + ++++ARRC+F L       P+ +  E    
Sbjct: 211  -RLHPNGERHLRS--LDVLRELYPQTLLDESLKLARRCTFDLGELRYQYPKELVPE---- 263

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +    + LR+    G+  R  +GA  K        +++D EL +IA + +  YFL V D 
Sbjct: 264  EHSASSWLRHLTEQGIAWRWPKGAQPK------VLKQIDDELELIAELGYESYFLTVHDV 317

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A++  I +  GRGS A S   +AL IT+IDP R +LLFERF++ +R   PD D+DF 
Sbjct: 318  VRFAREQKI-LCQGRGSAANSAVCFALGITEIDPDRTTLLFERFMSRERNEPPDIDVDFE 376

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL--CKLIPN 481
             +RR+EV++YV  +YG  R A      +  A  A+RDV +AL +P  Q++ L  C    +
Sbjct: 377  HERREEVLQYVFRRYGRRRAALTAVVSTYHASGAIRDVAKALGLPPDQINALADCCGHWS 436

Query: 482  DPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            D   PV         R RE       P + R+L ++ +L G  RH S H  G VI ++PL
Sbjct: 437  DETPPV--------ERLREGGFDPESPLLHRVLSLTGQLIGFPRHLSQHPGGFVISEQPL 488

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
              LVP+     +D  + Q++   ++  GL+K D L L  L+ +++  D L +R    DLS
Sbjct: 489  DTLVPVENAAMADRTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLL-RRHRHQDLS 547

Query: 600  L--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  IP +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 548  LATIPPEDRPTYDMISRADTIGVFQIESRAQMSMLPRLRPQTFYDLVIEVAIVRPGPIQG 607

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  Y  R+N +E+     P ++ +LK T GV ++QEQVMQIA + + YS  EAD LRR
Sbjct: 608  GMVHPYLRRRNKEEEETYPSPELEVVLKRTLGVPLFQEQVMQIAIVAADYSPGEADQLRR 667

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +M   K    ++  KER  +G  KNG S   A  IFE +  F  YGF +SHAA++A+++Y
Sbjct: 668  SMAAWKRHGGLEPHKERLAAGMKKNGYSPEFAAQIFEQIKGFGSYGFPESHAASFALLTY 727

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---- 830
             + W+K H P  F  A +           +  QDAR+ ++QI P  V     D  +    
Sbjct: 728  ASCWLKCHEPAAFACALINSWPMGFYSPDQILQDARRHHLQIRPVDVRASDWDCSLEPIA 787

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            G+   I   L  IKG     AR I +A A   F  + D   R     L+ R    L  AG
Sbjct: 788  GEQPAIRMGLRMIKGFREEDARSIEKARARGAFADVADLGERAG---LDSRAQALLADAG 844

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A           L+ L   +  A+W E     K   +FA         + L   SV    
Sbjct: 845  A-----------LRGLAGHRHRARW-EVAGVQKQLGLFAGLPSQEEPDVLLPTPSVSED- 891

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 +   LG     HPL + +  LR    +   + +    G  + +A +V  +Q+  T
Sbjct: 892  --LFTDYATLGTTLGPHPLTLLRNELRARRCRSSRDLLEVEHGRPVSVAGLVTGRQRPGT 949

Query: 1010 RKGSRIGWVTF 1020
              G     VTF
Sbjct: 950  ASG-----VTF 955


>gi|291300434|ref|YP_003511712.1| DNA polymerase III subunit alpha [Stackebrandtia nassauensis DSM
           44728]
 gi|290569654|gb|ADD42619.1| DNA polymerase III, alpha subunit [Stackebrandtia nassauensis DSM
           44728]
          Length = 1105

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 285/929 (30%), Positives = 447/929 (48%), Gaps = 81/929 (8%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +  L  HS +S L+GA S  +++ +        +AITD + L+ A+ FSQ A    +  
Sbjct: 62  GYAELHAHSYFSFLDGASSPEDLVTEALRLGLSGLAITDHDGLYGAVRFSQAAKDTSLST 121

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           + G +L + +        +   P P+   ++ L     GY +L   +    L   G Q  
Sbjct: 122 VYGAELSLGLSGE-----RTGVPDPSGTHLLTLARGPNGYAKLSATIGNAQL--AGGQKG 174

Query: 130 RICLSWLQEIGT---EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
                 L+++     + +++LTG   GP+ RA   +      + L   K LFG + + V 
Sbjct: 175 LPDYGSLEDVAAALRDEVLVLTGCRKGPVRRALA-DGPDAVRRELERLKHLFGPEGVAVE 233

Query: 186 LQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           L  HR +     +Q++  LA   +LP+VATNN  +     +    V+ A+  +  + + D
Sbjct: 234 LTDHRAFVDTDHNQLLFDLATDLDLPVVATNNVHYARAARHRLSQVMSAIRANLPLEELD 293

Query: 245 R--PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              P   P   L + SEM   F+  P A+ NTV +    +F L + AP LP F   +  D
Sbjct: 294 GWLP-AAPVARLCSPSEMAERFAPFPGAVANTVRLTGELAFDLDLIAPALPPFPVPDGHD 352

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               E + LR  A  G  +RL   A  +    + YR RL+ EL++I  + F GYFLIV D
Sbjct: 353 ----EASWLRELAREG-ALRLYGTAAER---PEAYR-RLEHELDIITNLGFPGYFLIVRD 403

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            + + ++N I V  GRGS   SV  Y L IT +DP+R++LLFERF++P R   PD D+D 
Sbjct: 404 IVGFCEENRILV-QGRGSAVTSVVCYCLGITAVDPVRYNLLFERFMSPIREGPPDIDLDI 462

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              RR+EVI+YV  KYG    AQ+    S + ++A RDV  AL     Q+D       N 
Sbjct: 463 EARRREEVIQYVFTKYGRTYAAQVANVISYRRRSATRDVATALGHSPGQIDAWSA---NS 519

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLL----EISQKLEGLYRHASTHAAGIVIGDRP 538
           P                  R   P++D L       + +L G  RH   H+ G+VI DRP
Sbjct: 520 P------------------RRGGPALDELPTDVGTYAGQLLGAPRHLGIHSGGMVICDRP 561

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD 597
           + ++VP+      +  V Q++      AGL+KFD LGL  LT L ++ D         +D
Sbjct: 562 VIEVVPVEHARMENRTVLQWDKDDCADAGLVKFDLLGLGMLTALHEAADLANTHYATGID 621

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           L  +   D + Y ++    ++G FQ+ES    Q    ++ + + D+   ++L RPGPI  
Sbjct: 622 LKKLAPTDPDVYAMIHAGDSVGTFQIESRAQIQLAPRLRAENLHDLAVQIALVRPGPIQG 681

Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             V  Y  R+ G+E I   HP ++  LK T GV ++QEQ+M +A   +G+S +EAD LR+
Sbjct: 682 GAVHPYVRRRRGEEPIEYPHPTMEAALKRTLGVPLFQEQMMALASDCAGFSAAEADELRQ 741

Query: 716 AMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           AMG K+  E M + K RF++GA+ N I+  +A +++  L  F+ YGF +SHA ++A I+Y
Sbjct: 742 AMGAKRSVERMQRLKSRFLTGAAANDITGPLADDLWSRLEAFSGYGFPESHAISFAYIAY 801

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------------ 822
            +A++K +YP  FL   +  +      +     DAR+  + +    +N            
Sbjct: 802 ASAYLKRYYPAAFLVGLIRAQPMGFYSVNTLIADARRHGVTVHAVHINHSSATTTLDQKG 861

Query: 823 -------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                  TP      G   +   L  I+G+ T TA  I+     +P+  +     R +  
Sbjct: 862 APALPETTPATWGAQGPT-VRLGLDQIRGINTETAERIVRG---QPYTDISQLARRAE-- 915

Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +    LE+L  +GAL  FG +R Q L +
Sbjct: 916 -ITTTQLENLATSGALADFGLTRRQALWT 943


>gi|294155789|ref|YP_003560173.1| DNA polymerase III, alpha subunit [Mycoplasma crocodyli MP145]
 gi|291600163|gb|ADE19659.1| DNA polymerase III, alpha subunit [Mycoplasma crocodyli MP145]
          Length = 974

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 273/903 (30%), Positives = 460/903 (50%), Gaps = 101/903 (11%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           +L  ++ +S L   + L  +    +  +   +A+TD NN+F+   F   +    I+PIIG
Sbjct: 5   YLHTNTEFSFLNSTIKLEKLFKLASEKEYEYLAMTDINNMFALGMFLNLSKKYNIKPIIG 64

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            +L   +QDN+              S++++    EGY   IEL +  +L+ +G Q V   
Sbjct: 65  FEL---LQDNI--------------SVIIIAKNYEGY---IELNNIAFLVSKG-QKVE-- 101

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              L+ + +  + ++    +G +                             NL+  +  
Sbjct: 102 ---LESLDSNNVYVIDHEENGYLKN---------------------------NLEVPKIS 131

Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
           + +  S+ +    T   P+        L E+D EA      +A  T  + K       D+
Sbjct: 132 NFWYNSKTIISDQTIYAPVKKV-----LFEDDNEA-----LIALQTTGNNKITNSYYNDY 181

Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
           +  N  + + I +   + L N   +    + I     P L  F     +D+  E+   L 
Sbjct: 182 F--NEKDFIGIDN---KVLLNVNTLVNSINIIFPDSTPKLAEF----KNDLTPEKL--LY 230

Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            + + GL++   +    + Y  +   +RL +E   I ++ F  YFLI+ D I +AK   I
Sbjct: 231 KQCLIGLDINKKE---FEKYSIETVMERLTYEYKTIVKLGFCSYFLIIKDVIDFAKNKGI 287

Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
            +GPGRGS AGS+ ++ L IT I+PL+++LLFERFLN DR++MPD DID   DRRDE+ +
Sbjct: 288 YIGPGRGSAAGSLISFLLGITKINPLKYNLLFERFLNVDRVTMPDIDIDIQDDRRDEIAK 347

Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
           Y+  KYG+E  + I TF S+ AK A+RD+GR LQ+  + +D + K +  +     +L+  
Sbjct: 348 YIVEKYGYEYCSYISTFQSIGAKMAIRDIGRYLQINLNIIDSISKSLDQNE----TLEEA 403

Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
              +R  +A +++    +LLE+++K+EG+ R    H AGI+I +  ++ + P Y +  ++
Sbjct: 404 CLKNRVFKAEISE--YPKLLELAKKIEGIPRQHGIHPAGIIISNTKITDIAPTYSN-STN 460

Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK---------SLDFLAQRGVKVDLSLIPF 603
           L   Q  + ++E  GL+K DFLGLKTL++++            D+L  +   +      F
Sbjct: 461 LSQIQLPLNFLEDYGLLKIDFLGLKTLSIIKDIEEVIPNELRFDYLYDKNENI------F 514

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
           +D +T+ +L +  T GIFQLES GM+ A+  +  D   D++A++SL+RPGP+  I  Y N
Sbjct: 515 NDKKTFDVLNSGLTEGIFQLESPGMKSAITKVSIDSFNDLVAIISLFRPGPMQYIDQYAN 574

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            K   + I  IHP  D ++K+T G+I+YQEQ+MQI Q +S  + S+AD+LRRA+ KK ++
Sbjct: 575 GKKDPKTIKRIHPYYDEIVKDTFGIIVYQEQIMQIVQKISSMTFSQADLLRRAISKKDEK 634

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           ++ + K  F  G  KN I K +   I+  +  FADYGFNKSHA AY+ I+Y+ A+ KT+Y
Sbjct: 635 KLVEMKSSFFEGGIKNNIKKDVLDEIYARIELFADYGFNKSHAVAYSYITYKMAYYKTNY 694

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              F  A ++        I K+ ++A+  +I +  P +N       V ++ +Y  L  IK
Sbjct: 695 KNVFYRALISNANGTHLTINKYVKEAKSVDISVQSPDINFSKKHAVVINSNLYLPLNMIK 754

Query: 844 GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
           GVG      I+    D K F S  +   ++ +  +   ++ +L+ +     +G +   LL
Sbjct: 755 GVGGVALEKIINTPKDNKKFSSFFELYLKLRNSGVGESIINALIKSNTFRTYG-NVNSLL 813

Query: 903 QSL 905
            SL
Sbjct: 814 NSL 816


>gi|240047654|ref|YP_002961042.1| DNA polymerase III DnaE [Mycoplasma conjunctivae HRC/581]
 gi|239985226|emb|CAT05239.1| DNA polymerase III alpha subunit [Mycoplasma conjunctivae]
          Length = 978

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 250/665 (37%), Positives = 380/665 (57%), Gaps = 25/665 (3%)

Query: 318 GLEVRLAQGAIAKGYHAQDY---RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
            L+  L    I K    ++Y   R+RL  E  VI+ + FS YFL++ DFI+WA+  NI +
Sbjct: 228 NLKSILEDSVIKKQDELKNYPQVRKRLSSEYKVISELNFSNYFLLIWDFIKWARSQNILI 287

Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
           GPGRGS +GS+ +Y L IT I+PLR+ LLFERFLNP R +MPD DID    RR EVI Y+
Sbjct: 288 GPGRGSSSGSLISYLLDITQINPLRYDLLFERFLNPLRQTMPDIDIDIQDTRRSEVIDYI 347

Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI-PNDPAHPVSLQAIA 493
           Q  YG+E  A IITF +L A++  RDV +A  +  S+V+   KLI PN     ++LQ   
Sbjct: 348 QKTYGYEHTATIITFSTLAARSVFRDVSKAFGISESEVNANAKLIKPN-----MTLQECY 402

Query: 494 DDSRFREARLADP-------SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           D+ +     L D            + +IS+ LEG+ R + THAAGIV+   P+ QLVP  
Sbjct: 403 DEEKSAFRSLIDRQEQDKTYKYKEIFKISKFLEGMPRQSGTHAAGIVVSKVPICQLVPTL 462

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
              +      QF+ +++E+  L+K D LGLK L ++Q+ L  +A+   ++    +P  D 
Sbjct: 463 ES-KDGYNQVQFSAEYLEEFSLLKIDLLGLKNLNIVQQILTLIAKENHELSFEDLPLFDA 521

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            T +LL++  T GIFQLES GM   L G+  D IED+IA +SL+RPGP+  I +Y  RKN
Sbjct: 522 ATNNLLSSGLTSGIFQLESPGMSSTLRGVGVDSIEDVIATISLFRPGPLKQIPIYKQRKN 581

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            K K  SI    D ++  T G+IIYQEQ+MQI Q ++G++L++AD++R A+ KK + ++ 
Sbjct: 582 NKIKWESISYEYDQIVAPTYGIIIYQEQIMQICQQIAGFNLAQADIIRVAISKKDESKLI 641

Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             K+ FI  A K G        I+EL+ KFADYGFNK+HAAAYA ++Y+ A++KT +P +
Sbjct: 642 AIKDSFIEAAIKKGHKLEYIEKIYELIYKFADYGFNKAHAAAYATLAYKMAYLKTKFPAQ 701

Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--FKVGDNRIYYSLAAIKG 844
           F +  ++ E  + E IKK+  +A++   ++  P +N    +  F + +  I+  L  IKG
Sbjct: 702 FYSCLISNENGSHENIKKYALEAQKSGFKVCQPDINHSFENATFDLEEKLIFLPLTMIKG 761

Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
           +G+   R ++ E  A   + +  DF  R+     +  ++  L+ A AL  FG S+  LL 
Sbjct: 762 IGSNYIRPLLKEREAKGKYSNFIDFFLRMKIINFSETLIIKLIKASALASFG-SQDSLLA 820

Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
           S++  + Y   + ++   +    +      F+    L++  ++      +NE   LG  F
Sbjct: 821 SVEIAKNYYPCILEDAKGEK---YIDYSQVFNIPFVLKEVEIDYQQT-IKNEIEFLGMQF 876

Query: 964 SGHPL 968
           S  P+
Sbjct: 877 SKPPI 881



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 17/108 (15%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            ++L  +S YS L   + ++++++    +    + +TD NNLF+  +F        I PI
Sbjct: 3   LINLHTNSEYSFLSSTIKIDSLINYAIQNNLSTLVLTDINNLFAVPKFYHLCKKNNINPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
           IG QL+ +                     +LL     GYQ L  L S+
Sbjct: 63  IGLQLEAENY-----------------HFILLAKNYLGYQHLSALSSK 93


>gi|315604150|ref|ZP_07879216.1| error-prone DNA polymerase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313856|gb|EFU61907.1| error-prone DNA polymerase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 1096

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 288/977 (29%), Positives = 461/977 (47%), Gaps = 117/977 (11%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS++S LEG     +++++ A     A+AI D + ++S ++ +  A   G+  I
Sbjct: 11  YAELHAHSAFSFLEGTDEPASMVEEAARLGLDALAILDVDGMYSTVQTTVAARRCGLPVI 70

Query: 71  IGCQLDIDMQDNLKM-------TNQGKTPFPTVPSIVLLVSTAE--GYQRLIELVSRMYL 121
            G +L +   + L+        T  G  P    P I L V TA   GY  L+  +S   L
Sbjct: 71  YGAELTLG-SNALRSILPGSCGTGWGLPPGAEDPGIRLPVLTASPTGYANLVGAMSERAL 129

Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180
             +G++S    L  +   G+ GL +LTGG+ GP+ RA        A + +    ++ G D
Sbjct: 130 ATRGERSPTHSLDDVGGAGS-GLRVLTGGARGPLMRALRAGGPVWARRVVRALSEVCGAD 188

Query: 181 RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            + +  Q   G  +     +  LA      LVAT  +   S       DVL A    + +
Sbjct: 189 NVLIEWQAAAGDGQEVGDVLADLARQTGTRLVATTGARMSSPSKQALGDVLTATRLRSSL 248

Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            + +        +L++  EM  +     E+LE+  ++A   +F L++ AP LPR      
Sbjct: 249 EEANAHLGAHRAFLRSAREMAHLHRSHLESLEHACDVAADAAFDLRLVAPKLPR------ 302

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYR--QRLDFELNVIARMKFSGYF 357
               +  +    +  +A L     QGA  + G  AQ  R  + +D EL+VIAR+ F+GYF
Sbjct: 303 ---TRVPDGHTNDTWLAHLT---HQGAQQRYGTRAQHPRAWETIDHELDVIARLGFAGYF 356

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           LIV + + +  +  I +  GRGS A S   Y L IT +D +R +LLFERFL+  R   PD
Sbjct: 357 LIVKEIVDFCAERGI-LCQGRGSSANSAVCYCLGITAVDAVRHNLLFERFLSDARSGPPD 415

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D+D    RR+EVI++V + YG  R AQ+    + + ++A+RD  RAL  P         
Sbjct: 416 IDVDIEACRREEVIQHVYSTYGRNRAAQVANVITYRPRSAMRDAARALGYPAG------- 468

Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                     + QA      +   +   P++ R  E +  L  L RH   H+ G+V+ D+
Sbjct: 469 ----------AAQA------WSRGKGQTPTLVR--EAADALARLPRHMGIHSGGMVLTDQ 510

Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD---------- 587
           P+S++ P+    R    V Q++ +    AGL+KFD L L  LT L+ + D          
Sbjct: 511 PVSRICPVRWAAREGRTVLQWDKEDCADAGLVKFDLLSLGMLTALRIAFDELNGSNRSAD 570

Query: 588 --------------FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
                          L +R + + L  +P +D   Y LL    T+G+FQ+ES      L 
Sbjct: 571 TLGRAPLRGWAPRPLLGRREMPLGLHTLPEEDPRVYDLLCAADTVGVFQVESRAQMNTLP 630

Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            ++P C  DI+  V+L RPGPI    V  Y  R+ G+E +  +HPL++P L++T GV ++
Sbjct: 631 RLKPRCFYDIVVEVALIRPGPIQGRAVNPYLRRRAGREAVTYLHPLLEPALRQTLGVPLF 690

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
           QEQ+M+IA   +G S ++AD LRRAMG K+  E M+  +   ++G +  GI       IF
Sbjct: 691 QEQLMRIAADAAGLSGAQADQLRRAMGAKRSSERMEALRADLMTGMAARGIDAPTRERIF 750

Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
             L  FAD+GF +SH+ ++A I Y +AW+K H P  F AA +  +           QDAR
Sbjct: 751 GQLKGFADFGFPESHSFSFAHIVYASAWLKVHAPEHFYAAILASQPMGFYSPATLVQDAR 810

Query: 811 QFNIQIMPPSVNTPCVD------------FKVGDN-----------------RIYYSLAA 841
           +  ++++ PSVN   +D            ++ G +                  +   L+ 
Sbjct: 811 RHGVRVLAPSVNDSLLDASVERGATSASSYRAGRSDPLPSRQIVPVDVDPSLAVRIGLSQ 870

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           ++G+G    R I+EA  +  F+S  D   R   ++ +   +E L  +GAL+C G  R + 
Sbjct: 871 VRGLGKAAER-ILEARKEGAFESQADLARRAHLREGD---MEKLALSGALECLGVGRREG 926

Query: 902 LQSLDNI----QKYAQW 914
           + +   +       AQW
Sbjct: 927 MWAAGALAVPEADSAQW 943


>gi|322433250|ref|YP_004210471.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX9]
 gi|321165642|gb|ADW71344.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX9]
          Length = 1069

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 295/1033 (28%), Positives = 500/1033 (48%), Gaps = 68/1033 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +V L   S++S LEGA     + ++ A+   PA+ I D + L+ A      A   G++ 
Sbjct: 4    GYVELHGRSAFSFLEGASMPEAMAEQAASLGMPALGILDRDGLYGAPRLYMTAKKLGLRS 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKT-PFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             IG ++      N  +    +    P  P  + LL  +  GY+ L +L++  Y L Q  +
Sbjct: 64   HIGAEISTAEFGNQVLPEDWQPHTIPERPVRLSLLCESQTGYRNLSQLITG-YKLQQKSK 122

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
               I    + E   EGL+ LTGG  GP+  A          K L +  + FG + +YV L
Sbjct: 123  GEGIAPYRMIEERAEGLVCLTGGDEGPLAAALARGGLDEGRKALQSLVRTFGQENVYVEL 182

Query: 187  QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRHR  ++  R    + LA    LPL+ATN     +  + E  D++ A+ H   + +   
Sbjct: 183  QRHRIREQEARNQAAITLARELHLPLLATNGPNMATAFEREVLDLMTAIRHGCTLDEAGL 242

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ---VHAPILPRFIEKECD 301
              +   +  +   +EM+++F DLP A+  TVE++ R  F+++      P+ P   E E  
Sbjct: 243  LLQRNTNRQMIGATEMLTLFRDLPYAVAETVELSSRLQFVMKDMGYQFPLYP-IPEDETM 301

Query: 302  D--IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            D  + K     + N+      V+L + A           ++++ EL +IA++  +GYFLI
Sbjct: 302  DTFLHKRTMEGVANRYGCKTSVKLRKKA----------ERQVERELALIAKLGLAGYFLI 351

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++ +KN + V  GRGS A S   Y+L IT +DP+   LLFERFL+  R   PD D
Sbjct: 352  VWDIVEFCRKNGMLV-QGRGSAANSAVCYSLGITAVDPVGMDLLFERFLSEVRGEWPDID 410

Query: 420  IDF-CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            +D    D R+  I+YV  +YG    A      + + K+A  + G+AL        RL +L
Sbjct: 411  LDLPSGDDRERAIQYVYQRYGQLGAAMCANVITYRGKSAAGETGKALGFDVETTKRLTQL 470

Query: 479  IPN-DPAHPVSLQAIADDSRFREAR--LADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            + + +   P        + +F+ A   L  P + + LE+S ++  L RH   H+ G++I 
Sbjct: 471  VGSWEWKGPTDTM----EEQFQNAGFDLHHPRIAKYLELSIRMLDLPRHLGQHSGGMIIA 526

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
               L+ +VP+         V Q++ + +   GLIK D LGL  + +L+  ++ + +  G 
Sbjct: 527  QGQLASVVPIEPASMVGRNVIQWDKEDVSDMGLIKVDLLGLGMMAVLKDCVELIPRYYGK 586

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            KVD++ IP DD + Y  L    T+G+FQ+ES     +L    PD   D++  V++ RPGP
Sbjct: 587  KVDIAQIPHDDPKVYESLRRADTVGLFQVESRAQMASLPRNNPDKFYDLVVQVAIIRPGP 646

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            I   ++  Y  R+ G+++I   HPL++P+L  T GV ++QEQ+++IA  ++ ++  EA+ 
Sbjct: 647  IVGKMMNPYMERRQGRQEIRYPHPLLEPVLHRTLGVPLFQEQLLRIAMTIANFTGGEAEE 706

Query: 713  LRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRA+G ++  ++M   + +  +G   NG+       I + ++ FA YGF +SHAA++A+
Sbjct: 707  LRRALGSRRSADKMKALELKLRAGMDANGVGPAAQEEIVQSISSFALYGFPESHAASFAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV---NTPCVDF 828
            I+Y +AW+K HY   F AA +  +           +DA++  ++I P  V   +  C   
Sbjct: 767  IAYASAWLKFHYLGAFTAAILNNQPMGFYSAAVLVKDAQRHGLRIKPVDVLRSSWSCTLE 826

Query: 829  KVGDNRIYYSLA--AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            K  + ++   L    ++G+   +A  +  A   +PF S+E+   RV S  L R  L +L 
Sbjct: 827  KEDNGKLSLRLGFRYVRGMREGSAVELEAAREMRPFASIEELARRVPS--LTRTDLTTLA 884

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
              GAL+  G          + + +     +  R  +       E         L++    
Sbjct: 885  EVGALNSIG----------EGLHRREALWQVERAGRKAGPLLEE---------LDRDEDA 925

Query: 947  NSSVR-FENEQRVLGFYFSG------HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
            +S +R  E  +R++  Y S       HP+   +P LR M I    +      G   R+A 
Sbjct: 926  DSPLRAMEPHERMVADYASTGVTVGRHPMAHCRPQLRAMEIIPARDLSLLRHGVKARIAG 985

Query: 1000 MVVSKQQKKTRKG 1012
             V+++Q+  T  G
Sbjct: 986  CVIARQRPGTAHG 998


>gi|145595754|ref|YP_001160051.1| error-prone DNA polymerase [Salinispora tropica CNB-440]
 gi|145305091|gb|ABP55673.1| DNA polymerase III, alpha subunit [Salinispora tropica CNB-440]
          Length = 1124

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 304/1046 (29%), Positives = 472/1046 (45%), Gaps = 98/1046 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  H+++S L+GA     + ++       A+A+TD +  +  + F++ A A  +  +
Sbjct: 74   YAELHTHTNFSFLDGASHPEELAEEAVRLGLTALAVTDHDGFYGVVRFAEAARALHLPTV 133

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +D    L     G+ P P    ++LL    EGY RL   +SR  L  +G +  R
Sbjct: 134  FGAELSLD----LPGAPNGE-PDPLGRHLLLLAHGHEGYARLAATISRAQL--RGGEKGR 186

Query: 131  ICLSWLQEIGTE---GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
                 L E+  E    +++LTG   G +  A        A + L     LFG + + V L
Sbjct: 187  PIYGELAEVAAELRDHVLVLTGCRKGHVPAALLTEGVDAAARELDRLTALFGAETVAVEL 246

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H    D  R   + +LA    LP VATNN  + +         L AV     + + D 
Sbjct: 247  TDHGHPIDADRNDALAELAEAAGLPTVATNNVHYATPGRRRLATTLAAVRARRSLDEIDG 306

Query: 246  --PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              P     H L++ +EM + F+  P A+    E     +F LQ+ AP LP +        
Sbjct: 307  WLPAAGAAH-LRSGAEMAARFAAYPGAVARAAEFGAELAFDLQLVAPALPAYPVAS---- 361

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E + LR+    G   R          H + Y Q L+ ELN+I  + F GYFL+V D 
Sbjct: 362  GHTEMSWLRHLTARGARERYGP----PEAHPEAYAQ-LEHELNMIEELGFPGYFLVVYDI 416

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + + ++ +I    GRGS A S   YAL IT++D +R  LLFERFL P+R   PD D+D  
Sbjct: 417  VTFCREQDI-YCQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVDIE 475

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR+EVI++V  +YG E  AQ+    S + ++A+RDV +A      Q D   K I    
Sbjct: 476  SSRREEVIQHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQI---- 531

Query: 484  AHPVSLQAIADDSRFREARLADPS--VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                         R+     AD     + ++  +  ++   RH   H+ G+VI DRP+ +
Sbjct: 532  ------------DRWGSVAAADVEGIPEPVVAYADAVQTFPRHLGIHSGGMVICDRPVIE 579

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            + P+         V Q++       GL+KFD LGL  L  L    D +   G +++L  +
Sbjct: 580  VCPVEWGRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLAALHHGYDMI---GARLELGDM 636

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
              DD E Y +L     +G+FQ+ES      L  ++P C  D++  V+L RPGPI    V 
Sbjct: 637  TLDDDEVYDMLCRADAVGVFQVESRAQMATLPRLKPRCFYDLVVEVALIRPGPIQGGSVH 696

Query: 661  -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG- 718
             Y  RKNG+E +   HPL+   L++T GV ++QEQ+MQ+A  L+G+  +EAD LRRAMG 
Sbjct: 697  PYIRRKNGQEPVTFPHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAEADQLRRAMGA 756

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+  E M +  +R  +G ++ GI+  +A +++  L  FA YGF +SHA ++A + Y ++W
Sbjct: 757  KRSAERMARIADRLYAGMAERGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASSW 816

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT--------------- 823
            +K ++P  FLAA +  +       +    DAR+  +++  P VN                
Sbjct: 817  LKRYHPAPFLAALLNAQPMGFYSPQTLVDDARRHGVEVRRPDVNASGAGAVLESTPSTRW 876

Query: 824  ------PCVDFKVGDNRIYYSLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKK 876
                  P   + +G   +   L +++ +G   A  I  E +A  P+  + D   RV    
Sbjct: 877  GSQPGEPPHAWGLGGPAVRLGLDSVRTLGGEVAGRIETERAARGPYRDMSDLARRV---G 933

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            L    LE+L  A A  CFG +R Q L           W       +H +      GT   
Sbjct: 934  LTAAQLEALATADAFACFGVTRRQAL-----------WSAGAAAQEHPDRL---PGTVPG 979

Query: 937  KI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             +  TL      +   R   +    G     HP    +  L  +G            G  
Sbjct: 980  TVAPTLPGMGAVD---RLVADVWATGLSPESHPARFVREQLDALGAVPIARLARVEPGRR 1036

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            +R+  +V  +Q+  T  G     VTF
Sbjct: 1037 VRVGGIVTHRQRPATAGG-----VTF 1057


>gi|301633233|gb|ADK86787.1| putative DNA polymerase III, alpha subunit [Mycoplasma pneumoniae
           FH]
          Length = 872

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/571 (38%), Positives = 316/571 (55%), Gaps = 13/571 (2%)

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
           Q Y +RL  EL +I  + F+GYFL+V+D +Q+A  N+I +GPGRGS  GS+ A+ L IT 
Sbjct: 271 QLYEERLAKELEIINSLHFAGYFLVVSDLVQFAHNNDILIGPGRGSAVGSLVAFLLKITQ 330

Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           IDP+  +L+FERF++  R  +PD DID  + +RD VI YV  KYG E+ AQI+TF   + 
Sbjct: 331 IDPVANNLIFERFISRHRQGLPDIDIDIMETKRDLVIDYVMQKYGREQCAQIVTFQKFKT 390

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
           ++ALRDVG+  +      D L KL  +     + +  + D       +L+  S   L E+
Sbjct: 391 RSALRDVGKVFKHIEGAEDLLGKLPKDKSLLELDVNGVTDPV----LQLSLKSFRLLWEV 446

Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
           ++++    R  S HA+G+VI   PL   +P+     ++  VTQ +M W+E   L KFD L
Sbjct: 447 AREIINFPRQPSIHASGVVIVTEPLITTIPLMVGNNNNY-VTQVSMDWLEWYNLNKFDLL 505

Query: 575 GLKTLTLLQKSLDFLAQRGVKVD--LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
           GL  LT++ + +  +  + V V   L  IP DD  T+  LT + TLG+FQLES GM++ L
Sbjct: 506 GLINLTMIHEVVQAVKPKEVSVQQFLQQIPLDDEATFTNLTNQATLGVFQLESFGMKKVL 565

Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           + ++P  + D+  +++LYRPGP DNI  +   +N       I P I P+LKET GV+I+Q
Sbjct: 566 KQIKPHNLHDLAIVLALYRPGPQDNINTFIANRNLGFDTSDIDPRILPILKETYGVLIFQ 625

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQV+ IA+ ++ YSL  AD  RRA+ KK  + +      F  GA  N  S   A  IF  
Sbjct: 626 EQVINIAKTVANYSLETADSFRRAISKKNLQVIQDNMRSFYEGALANNFSLKAATTIFNY 685

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           + +FA YGFN SHA  YA++SY TAW+KTHY  +F    +  E    EK K+   +    
Sbjct: 686 IQRFAGYGFNLSHALGYALLSYWTAWLKTHYFEQFNLWWLNHEQGKKEKQKQLLNEFISS 745

Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR---HIMEASADKPFDSLEDFC 869
             +I PP +N    DF V D ++Y     I G+G   A    H+ E     P  SL    
Sbjct: 746 GYEICPPLINKAKSDFSVQDKKLYLGFKLINGIGDKQAHALEHVQEVLKQNPNLSLIATV 805

Query: 870 SRVDSKKLNRRVLESLVF---AGALDCFGYS 897
           +   SK +    L+ +     AG  +CF Y+
Sbjct: 806 NLCLSKTVGGLELKDITLLQQAGCFNCFNYT 836



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 16/106 (15%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV+L  +S Y+ L   LS   ++D    DQQ A+ +TD  NLF A EF      A I+P+
Sbjct: 2   FVNLHTNSYYNFLNSTLSPQKLVDLAVQDQQVAVCLTDP-NLFGATEFFLACQKAHIKPL 60

Query: 71  IGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
           IG  + +   + N+              +++++  T  GYQ L+ L
Sbjct: 61  IGLSVTVRHYEQNV--------------NLLVIAQTNRGYQNLMCL 92


>gi|296121580|ref|YP_003629358.1| DNA polymerase III, subunit alpha [Planctomyces limnophilus DSM 3776]
 gi|296013920|gb|ADG67159.1| DNA polymerase III, alpha subunit [Planctomyces limnophilus DSM 3776]
          Length = 1026

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 295/1031 (28%), Positives = 491/1031 (47%), Gaps = 89/1031 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-AAGIQ 68
            S+  L   +++S LE A   + ++ + A     A+A+TD N+L   +  +        ++
Sbjct: 2    SYAELHCLTNFSFLEAASHPDEMVARAAELGYSALAVTDINSLAGVVRANTATKDHPPLK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G ++                P    P IV+ V    GY  L  L++      + +  
Sbjct: 62   LIVGSEI---------------RPVDASP-IVVWVKDRRGYANLCRLIT----TGRRRAP 101

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
               C   L +I      +L G         F  N + +       ++ +FG+  ++  + 
Sbjct: 102  KGECHLTLDDIAQHAAGLLAGVVPPLHCEEFSINDAYL-------YRDIFGE-AFLLAEL 153

Query: 189  HRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRP 246
            HRG +D YR   +  L+    LPLVA  N LF   +    HDVL A+   T V+Q  +  
Sbjct: 154  HRGPHDHYRRGWLQDLSRQTNLPLVAAGNVLFHVPDRKPLHDVLTAIRLGTTVAQVGEAL 213

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +     +L+    + +I+ D+P ALE T+ IA +C+F L               D+++ E
Sbjct: 214  QTNAQRHLRPLDSLKAIYGDIPGALERTLMIAEQCTFSL---------------DELRYE 258

Query: 307  EENELRNKA---VAGLEVRLAQGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVA 361
               EL       +  L+    QGA  +  H   +  R  L+ ELN+I  +++  YFL V 
Sbjct: 259  YPEELAPPGFSPIQYLQHLTWQGAEQRYPHGLPEKIRHLLEHELNLIEELRYEPYFLTVW 318

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +++A+  +I +  GRGS A S   Y L IT +DP R  +LFERF++ +R   PD D+D
Sbjct: 319  DIVRFARSRDI-LCQGRGSAANSAVCYCLGITAVDPERIDVLFERFISRERDEAPDIDVD 377

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EV++Y+ NKYG ER        + + ++A+RDVG+AL      VDRL K   +
Sbjct: 378  FEHERREEVLQYLYNKYGRERAGIAAVTITYRPRSAIRDVGKALGFSLDLVDRLAKNADH 437

Query: 482  DPAHPVSLQAIADDSRFR--EARLADPSVD--RLLEISQKLEGLYRHASTHAAGIVIGDR 537
              A        +DD R R  EA L   S+   + + +  +L G  RH S H  G+VI   
Sbjct: 438  YRA--------SDDFRLRCQEAGLDIRSITGRQFVHLVGELLGFPRHLSQHVGGMVITRG 489

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKV 596
            PL +LVP+         V Q+N   ++  G++K D L L  LT ++K    + +  G  +
Sbjct: 490  PLHELVPIENAAMDGRTVVQWNKDDLDDLGILKVDCLALGMLTAIRKCFALVESTTGKTL 549

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI- 655
             L+ IP  D   Y ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI 
Sbjct: 550  TLASIPEGDERVYDMICRADTMGVFQIESRAQMSMLPRLKPRCYYDLVIEVAIVRPGPIQ 609

Query: 656  -DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
             D +  Y  R+ G+E+    +  I  +LK+T GV ++QEQ MQ+A + +G++  EAD LR
Sbjct: 610  GDMVHPYLRRRFGEEEETYPNEAIRRVLKKTLGVPLFQEQCMQLAIVAAGFTPGEADQLR 669

Query: 715  RAMGKKIKEE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RAMG   +   +D+ +++ + G  ++G+    A  +F+ +  F +YGF +SHAA++A++ 
Sbjct: 670  RAMGAWRRPGVIDQFRQKLLDGMKQHGLEGEFAERVFQQIRGFGEYGFPESHAASFALLV 729

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y +AW+K H+P +F AA +  +        +  QD R+  I++ P  VN    D  +   
Sbjct: 730  YVSAWLKYHFPAQFTAAVINSQPMGFYAPSQLVQDVRKHQIEVRPVDVNRSEWDCTLEQE 789

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +      IKG+  + A  ++E+  D  F S+ DF  R     L +  +E L  A A   
Sbjct: 790  SLRLGFCLIKGLQESAALTVVESRRDGSFTSMHDFVRRT---SLPQAQVERLAEADA--- 843

Query: 894  FGYSRMQLLQSLDNIQKYAQW--VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
                    L SL+  ++ A W  +  ++  +   +F   +     + TL   + E     
Sbjct: 844  --------LASLNQTRRVAVWNALSVSKKPRQRTLFDDLEPEEEPEATLPTMAPEEE--- 892

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               + R+ G     HPL  ++  L  +GI   E          +++A +V+ +Q+  T K
Sbjct: 893  VHADYRMTGLSLRSHPLAFHRERLETLGIIPAERLAQVPDDTLVKVAGIVLMRQRPSTAK 952

Query: 1012 GSRIGWVTFSE 1022
            G  I +VT  +
Sbjct: 953  G--ITFVTIED 961


>gi|148547815|ref|YP_001267917.1| error-prone DNA polymerase [Pseudomonas putida F1]
 gi|148511873|gb|ABQ78733.1| DNA polymerase III, alpha subunit [Pseudomonas putida F1]
          Length = 1026

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 299/1031 (29%), Positives = 472/1031 (45%), Gaps = 95/1031 (9%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  L   S++S   GA S + +  +       A+AITD   L   +   Q A    +
Sbjct: 3    TPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVHQL 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G   ++ + D               P +VLLV    GYQ L  L++R       ++
Sbjct: 63   RLIVGS--EVQLCDG--------------PKLVLLVENLTGYQNLCALITRAR-----RR 101

Query: 128  SVRICLSWLQE---IGTEGLIML-TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            + +      ++   +  +GL+ L     SG      +  S             +F +RL+
Sbjct: 102  AEKGAYQLFRDDLLLHHQGLLALWVAADSGDTATGAWLRS-------------VFAERLW 148

Query: 184  VNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +  HRG D   R  ++  LA    +  VA  +            D + A+     VS+
Sbjct: 149  LAVHLHRGSDDAMRLQRLRALAADVGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVSE 208

Query: 243  KDR-PRVTPDHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              R      + +L++++++  ++  DL   L  T+ IARRC F L       PR +  E 
Sbjct: 209  AGRFLFANGERHLRSQAQLAELYPLDL---LAETLVIARRCQFDLSELNYQYPRELVPE- 264

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                    + LR     G+ +R   G   K       R  L  EL +I  + +  YFL V
Sbjct: 265  ---GHTPASWLRELCEQGMPLRWPGGPSGK------VRAVLAKELGLIEELGYESYFLTV 315

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +A+   I +  GRGS A SV  + L IT++DP++  LLFERFL+ +R   PD D+
Sbjct: 316  HDIVAFARSQRI-LCQGRGSAANSVVCFVLGITELDPMKHHLLFERFLSRERNEPPDIDV 374

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  DRR+EVI+YV  +YG  R A      +  A  A+RDV R L +P  QVD L K   
Sbjct: 375  DFEHDRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARVLGLPADQVDALAKCCG 434

Query: 481  NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                       I DD R  EA      PS+ R+L ++ +L G  RH S H  G VI  +P
Sbjct: 435  R------WSDRIPDDQRLAEAGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQP 488

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597
            L QLVP+      +  V Q++   ++  GL+K D L L  L+ L++  D L   RG  + 
Sbjct: 489  LDQLVPVENAAMPERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLLQHHRGRHLT 548

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            L+ IP +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 549  LATIPSEDPATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAIVRPGPIQG 608

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D +  Y  R+  +E +    P +  + + T GV ++QEQVM++A + + Y+  EAD LRR
Sbjct: 609  DMVHPYLRRRLKQEPVTYPSPQLKEVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRR 668

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +M   K    ++  +ER + G  +NG +   A  IFE +  F  YGF +SHAA++A++ Y
Sbjct: 669  SMAAWKRHGGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHAASFALLCY 728

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---- 830
             ++W+K H P  F  A +           +  Q+AR+  I++ P  V     D  +    
Sbjct: 729  ASSWLKCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPDA 788

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             G   I   L  ++G+  T AR + +A A +P+ ++ED C R     L+ R    L   G
Sbjct: 789  EGTLAIRMGLRLVRGLAETDARRVQQARAQRPWRNVEDLCLRAG---LDARARARLADGG 845

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL      R Q           A+W +         +FA  +    + + L   +V    
Sbjct: 846  ALRALASDRHQ-----------ARW-QVAAVQPQLPLFADVQALPEEPVQLPVPTVGED- 892

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 + + LG     HPL + +  LR +G +   E      G+NI +A +VV +Q+ +T
Sbjct: 893  --LMADYQTLGTTLGPHPLALLRSRLRALGCRSSSELQGVEHGDNIAVAGLVVGRQRPQT 950

Query: 1010 RKGSRIGWVTF 1020
              G     VTF
Sbjct: 951  ASG-----VTF 956


>gi|162148659|ref|YP_001603120.1| putative DNA polymerase III alpha subunit [Gluconacetobacter
            diazotrophicus PAl 5]
 gi|161787236|emb|CAP56829.1| putative DNA polymerase III alpha subunit [Gluconacetobacter
            diazotrophicus PAl 5]
          Length = 1055

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 297/1025 (28%), Positives = 480/1025 (46%), Gaps = 84/1025 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  LQV S +S L G  S   +  +  A    A+ ITD N+L   ++    A A+G+
Sbjct: 5    APRYAELQVTSYFSFLRGVSSPGELFGQAKALGISALGITDRNSLAGMVQAHLAARASGV 64

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+GC+LD++                  P +++  +    Y  L  L++ +     GK 
Sbjct: 65   RLIVGCRLDLE----------------DAPPVLVYPTDRAAYGNLCRLLT-LGKARAGKG 107

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK----RLLTFKKLFGDRLY 183
              R+    L   G EGL+ +                S VA++     L   +  FGDR Y
Sbjct: 108  KCRLLWRDLVAWG-EGLLAVL--------------VSDVADEECAAHLRRLRDAFGDRAY 152

Query: 184  VNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L  R R  D+ R  ++V LA+   +  V TN+ LF + +     DV+  V H+T +  
Sbjct: 153  MALTLRRRPNDQIRLYELVNLAHAQRVKTVVTNDVLFHTHDRRILQDVVTCVRHNTTIEH 212

Query: 243  KDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                R    D YLK  +EM  +F+  PEA++ T+EI  RC F L   A   P  IE    
Sbjct: 213  AGFARERHADRYLKPPAEMARLFARYPEAIDRTMEIVARCRFSLDDLAYQYPDEIEIPGQ 272

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              Q+  E      A+     R   G I       D    L  EL +I RM+++ YFL V 
Sbjct: 273  TPQQALE------ALTWQAARETYGGIIP----PDVEMVLRHELALIGRMEYAPYFLTVH 322

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
              ++ AK+ +I +  GRGS A S   + L IT IDP R +LLFERF++ +R   PD D+D
Sbjct: 323  SIVREAKRRDI-LCQGRGSAANSAVCFVLGITAIDPSRTTLLFERFISEERGEPPDIDVD 381

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F   RR+E+I++V + YG +R A        +AK ALRDVG+ + +P   +  L + I  
Sbjct: 382  FEHARREEIIQWVYDHYGRDRAALTAVVIRYRAKGALRDVGKVMGLPEDVIALLSRQIWG 441

Query: 482  DPAH--PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
               H  P        D   R  RL        L++++ L G+ RH S H  G V+    L
Sbjct: 442  WSHHVDPEKFAGTGIDLTDRRIRLT-------LDLARCLIGVPRHLSQHPGGFVLTRDRL 494

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDL 598
             +LVP+      D  + +++   I+    +K D L L  LT ++K LD L A +G    L
Sbjct: 495  DELVPIEPAAMEDRQIIEWDKDDIDALKFMKVDILALGMLTCMKKGLDLLAAHKGQHFTL 554

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
              +P +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D
Sbjct: 555  QTVPAEDPRTYAMIRKADTIGVFQIESRAQMSMLPRLKPRTYYDLVIEVAIVRPGPIQGD 614

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+ G E+     P ++ +LK T GV ++QEQVMQ+A + + ++ +EAD LRRA
Sbjct: 615  MVHPYLRRREGLEEPDYPTPELEEVLKRTLGVPLFQEQVMQVAMVCADFTAAEADGLRRA 674

Query: 717  MGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M   K    +   + R + G ++ G  +  A  I++ L  F  YGF +SHAA++A+++Y 
Sbjct: 675  MATFKNTGTVSHFQTRLLEGMTRKGYPEEFAQRIYQQLEGFGSYGFPESHAASFAILAYT 734

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GD 832
            ++W+K H+P  FLAA +  +        +  +DAR+  +++ P  +N    D  +    D
Sbjct: 735  SSWLKCHHPDVFLAALLNSQPMGFYAPAQLVRDAREHGVEVRPVCINASRWDSTLEGEDD 794

Query: 833  NR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD-SKKLNRRVLESLVF 887
            +R    +   ++ +KG+    A  +  A   +PF S++D   R    ++   R+ E+  F
Sbjct: 795  DRGCFAVRVGMSLVKGLANAHAAALAAARLRRPFASIDDLWRRAGVPQEALVRLAEADAF 854

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
              A   FG +R + L           W  K   ++   +FA    +   +      +   
Sbjct: 855  RPA---FGLARREAL-----------WAIKGLHDEPLPLFAAAAQSRETEEPAMALAPMT 900

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                   +   LG    GHP+   +  LR+  I     ++A   G  +  A +V+ +Q+ 
Sbjct: 901  DGAEVVGDYNHLGLSLRGHPVSFLREDLRQRRIVPCGTAMALRDGKRVEAAGLVLVRQRP 960

Query: 1008 KTRKG 1012
             + +G
Sbjct: 961  GSGEG 965


>gi|310821701|ref|YP_003954059.1| DNA polymerase III subunit alpha [Stigmatella aurantiaca DW4/3-1]
 gi|309394773|gb|ADO72232.1| DNA polymerase III, alpha subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 1007

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 302/1028 (29%), Positives = 475/1028 (46%), Gaps = 111/1028 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S L GA     ++   A    PA+A+TD + L+  ++    A   G++ I
Sbjct: 2    YAELVCRSNFSFLRGASHPEELVATAARLGLPALALTDGDGLYGVVKAHLAAREHGLKLI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L +          +G       P +V+    A GY  +  LVS   +     ++  
Sbjct: 62   LGTELTL---------TEG-------PPVVVYAMDAGGYANMCRLVSASRMAHPKGET-- 103

Query: 131  ICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              L W +E+   +EGLI L      PI+        QV         + F  R +V L R
Sbjct: 104  -GLPW-REVAERSEGLIALLP-HPAPIE--------QVG-----GLAEAFPGRFHVGLCR 147

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                 D  RE++   LA    +PL A N+            DVL A+ H T V  K   R
Sbjct: 148  TLSAGDGPREARAEALARELGVPLCAHNDVHVHHRRRQPLQDVLTAIRHKTTVD-KAGTR 206

Query: 248  VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ- 304
            + P  +  LK+ +EM  +F D PEA+E T+EIA+RC   L               DD++ 
Sbjct: 207  LLPNAERTLKSPAEMARLFRDRPEAIERTLEIAQRCHATL---------------DDLRY 251

Query: 305  --KEEE--------NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
               EE+          LR     GL VR   G         + R++++ E+ +I  + F 
Sbjct: 252  HFSEEDLPPGLTAMGHLRQLTEEGLGVRYPAGV------PPEVRKQVEHEMRLIEALDFP 305

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFL + D +++A+   I +  GRGS A SV  YAL +T IDP+R  LLFERFL+ +R  
Sbjct: 306  GYFLALWDIVRFARSRGI-LCQGRGSAANSVVCYALQLTAIDPVRMGLLFERFLSMERKE 364

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF  +RR+EV++YV  K+G  R   +  F   + + ALR+VG++L +   QVDR
Sbjct: 365  PPDIDVDFEHERREEVLQYVYEKHGRHRAGMVCEFICYRGRLALREVGKSLGLSLDQVDR 424

Query: 475  LCKLIPND-----PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            L K+         P   V     A DSR R+           L +++++EG  RH S H 
Sbjct: 425  LSKVAAASGFEVTPEVLVEAGLSAFDSRVRQT----------LTLAREMEGFPRHVSIHV 474

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G VI   PL  L+P+         V Q+        G++K D L L  LT + K L  +
Sbjct: 475  GGFVITREPLVDLIPVENAAMKGRTVIQWEKDDTNALGVLKVDLLALGMLTAVSKCLALI 534

Query: 590  AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             +  G ++ L+ IP +D + Y +L    T+G+FQ+ES      L  ++P    D++  ++
Sbjct: 535  REHFGRELSLATIPPEDPKVYDMLCEADTVGVFQIESRAQMNMLPRLKPRTFYDLVIEIA 594

Query: 649  LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            L RPGPI   +V  Y  R+NG+E      P +  +L++T GV ++QEQ M++A + +G++
Sbjct: 595  LIRPGPIVGNMVHPYLRRRNGEEVPTYPTPDVQAILEKTLGVPLFQEQAMKLAMVAAGFT 654

Query: 707  LSEADVLRRAMGKKIKEE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
              EAD LRRA+G K  E+ ++  + RF+ G  K G        +F     FA YGF +SH
Sbjct: 655  AGEADGLRRALGHKRAEQLLEPYRMRFVEGGRKRGYPAAYMEELFAQFRGFAHYGFPESH 714

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +A++A+I+Y ++W+K HYP  F  A +  +            DAR+  +++ P  V    
Sbjct: 715  SASFALIAYASSWLKCHYPQAFTTALLNSQPMGFYAPHTLVADARRHGVEVRPVDVRHSG 774

Query: 826  VDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
             D  + +   +   L  ++G+G    + +  A A   F  L D   R    ++ R  L  
Sbjct: 775  WDCTLEEGGALRLGLRMVRGLGEAAGKRVAAARAGG-FSCLGDVARRT---RIPRHELTR 830

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  AGAL     SR Q L  +  +               +++F    G   D   +E   
Sbjct: 831  LALAGALASLCGSRRQALWEIQALGPL----------DADDLFF---GMSMDGTQVE-LP 876

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                + R   +   +G     HPL++ +P LR +G    E       G  + +  M++ +
Sbjct: 877  PMGVAERVTADYETVGLSLEKHPLELLRPTLRTLGAVSAEGLQRVSSGRRVAVGGMLICR 936

Query: 1005 QQKKTRKG 1012
            Q+  T +G
Sbjct: 937  QRPPTARG 944


>gi|220979967|emb|CAP72159.1| Putative DNA polymerase III alpha subunit [Escherichia coli LF82]
          Length = 1168

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 298/979 (30%), Positives = 471/979 (48%), Gaps = 136/979 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           L V + +SL E AL   N + KIA +    A+   D+ N+ S +   Q+A    +  I G
Sbjct: 4   LMVRTDFSLGESALKAENAV-KIAREAGYTAVISADSMNIASVIPL-QRAAGDDMAVICG 61

Query: 73  CQLDI----DMQDNLKMTNQGKTPFPTVP-----SIVLLVSTAEGYQRLIELVSRMYLLD 123
            +L+I      +   K+  +      ++      S   L+   +GY+ + EL++     +
Sbjct: 62  VKLNIVDDPTYEHRAKLAKESMRCMESLERGRNYSFTALIKNEQGYRDICELMTAANTRE 121

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182
           Q     R+ L  L     +G I+L     G +     F  +  A K + T     G D  
Sbjct: 122 QFYFVPRLSLEQLVSTYAKGNIILLTSDIGSV-----FQRNDFA-KIISTLITAGGKDNF 175

Query: 183 YVNLQRHRG--YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
           Y  +  H    YD+    + +++A   ++  VA   + + S +D +  D+   V ++  +
Sbjct: 176 YSVVYPHPTPFYDQI-NVRAMKVASALKIEPVAFYPAYYESIDDADIKDIAHMVTNNIKI 234

Query: 241 SQKDRPRVTP--DHYLKNRSEMV------SIFSDLP--EALENTVE--IARRCSFILQVH 288
            Q  R R+    D+ +  R  ++      S+  D+P   A+ +T +  I   C++     
Sbjct: 235 DQPHRLRIPHQRDNAINGRRHLLEALKAFSVRMDVPVTAAMASTTQDSIIDACTWRWHEL 294

Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFEL 345
            P LP+  +        +E   L   AVAGL  RL     G        + Y +RL +E+
Sbjct: 295 PPALPKMAD--------DEPATLMKLAVAGLRKRLTTKEFGYTPPASENRVYVERLKYEM 346

Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
           + + R+ F GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFE
Sbjct: 347 DTLTRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFE 406

Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
           RF+NP+R+ +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R  
Sbjct: 407 RFINPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIY 466

Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQAIADDS-RFREARLADPSVDRL-------LEISQK 517
            +  +           D A    L+ + DDS    E R    S+D+           + K
Sbjct: 467 GVESA-----------DMAVSKELKNVEDDSLPLEELREQLASLDKYATKYPDAFNAACK 515

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
           L+ L R    HAAG+++   PL++  P+ R  R D     F+ ++ E  GLIK D LGL 
Sbjct: 516 LQSLMRGFGRHAAGMIVAGVPLTERTPVER--RGDARCIAFDKRYCEAMGLIKLDVLGLA 573

Query: 578 TLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE--- 633
           TL LL  +  ++ +  G  ++L  IP DD +         T G+FQLES  MR+ L+   
Sbjct: 574 TLDLLDSAKRYIKESTGEDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLG 633

Query: 634 -GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
            G++P   + ++A  +L+RPGPI + ++  Y +   G     SIHP ++ + +ET GV++
Sbjct: 634 GGIEPMSFKTVVATTALFRPGPIQSGMLDDYVSVAKGFMAPHSIHPRLEEVTRETNGVLL 693

Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK-------ERFISG-------- 735
           YQEQ+MQ +++L+G+S++EAD LR A+GKK    MDK K       ER  +G        
Sbjct: 694 YQEQIMQSSRVLAGFSMAEADALRSAIGKK---NMDKMKAIGSDFVERAQAGWVTLSLKN 750

Query: 736 ------------------------------------ASKNGISKTIAVNIFELLAKFADY 759
                                               + + G+SK  A  I++   KF  Y
Sbjct: 751 GGTVEVHKHAKLDCSDGKRRSYSEAISDGIDYVEIVSEQEGLSKEKAQEIWDAFEKFGGY 810

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            FNKSH+ AY++ISYQ+ W+KTHYP EF AA++T+  ++  K +   +DA  + I+++PP
Sbjct: 811 AFNKSHSVAYSLISYQSMWLKTHYPAEFFAAALTILGED--KHQGLVKDALTYGIRVLPP 868

Query: 820 SVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEA--SADKPFDSLEDFCSRV 872
            VN      ++     G   +Y   +A+KG      + IM A       F+S+  F   V
Sbjct: 869 DVNVSSNRIEIRTLEDGSQALYAPFSAVKGCSENGCQAIMRAREKVGGKFESVAQFDEAV 928

Query: 873 DSKKLNRRVLESLVFAGAL 891
           + +  N RV ESL   GA 
Sbjct: 929 EKRACNSRVRESLHKVGAF 947


>gi|269795426|ref|YP_003314881.1| DNA polymerase III subunit alpha [Sanguibacter keddieii DSM 10542]
 gi|269097611|gb|ACZ22047.1| DNA polymerase III, alpha subunit [Sanguibacter keddieii DSM 10542]
          Length = 1117

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 312/1080 (28%), Positives = 496/1080 (45%), Gaps = 108/1080 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQ----PAIAITDTNNLFSALEFSQKACA 64
            P +  L  HS++S L+GA    N  +++AA+       A+A+TD + L+  + F++ A  
Sbjct: 11   PEYAELHAHSAFSFLDGA----NQPEELAAEAYRLGLTALALTDHDGLYGVVRFAEAARQ 66

Query: 65   AGIQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             G+  I G +L + D    L        P P    +++L    +GY+ L   ++  +L  
Sbjct: 67   LGLPTIFGAELHLPDAVGTLDAPT--GVPDPRSEHLLVLARGPQGYRNLSSAIAEGHLST 124

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS---QVAEKRLLTFKKLFG- 179
              K +    L  L        ++LTG   G +  A     +   + A  +L      FG 
Sbjct: 125  GRKGAADHSLEELGARADGQWLVLTGCRKGAVRSALGSGPTWDPRGAATQLDRLVATFGR 184

Query: 180  DRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            D + V +      YD  R   +  LA+   + LVAT  + +    D +    L AV   +
Sbjct: 185  DNVAVEVTSTGDPYDDERNEHLAALAHAARVDLVATTAAHYAHPRDADLAAALAAVRARS 244

Query: 239  VVSQKDR--PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
             +   D   P   P  +L++  EM++  S  PEA+     +   C+F L + AP LP + 
Sbjct: 245  SLDDMDGWLPGA-PSAHLRSAGEMLARHSAHPEAVTAAARLGAECAFDLSLVAPNLPPYP 303

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                      E   LR     G   R    +     G +AQ     +D EL +I  + F 
Sbjct: 304  VP----AGHTEATWLRELVRRGALHRYGPRESERVPGAYAQ-----IDRELRIIEDLTFP 354

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFL+V D +++ + N I +  GRGS A S   YAL IT +D +   LLFERFL P+R  
Sbjct: 355  GYFLVVYDLVEFCRVNGI-LAQGRGSAANSAVCYALGITAVDAVAHGLLFERFLAPERDG 413

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL------QMP 468
             PD D+D    RR+EVI++V + +G    AQ+    S + ++A+RD  RAL      Q  
Sbjct: 414  PPDIDVDIESQRREEVIQHVFDTFGRRHAAQVANVISYRPRSAVRDAARALGYDTGQQDA 473

Query: 469  YS-QVDRLCKLIPNDPAHPVSLQAIADDSRF----REARLADPSV--------------- 508
            +S Q++R   L P  P+       + +   +    +  R+ DP V               
Sbjct: 474  WSKQIERWGSLRPAPPSPEAVAAGMPEGKPYGALEQRERIRDPLVEPTARDDRAMAREGM 533

Query: 509  ----------------DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                            D +++++++   L RH   H+ G+V+ DRP+ ++ P+       
Sbjct: 534  WVKGGHAPQRDTEDIPDAVVDLAERFLRLPRHLGIHSGGMVMCDRPVIEVCPVEWARMPG 593

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHL 611
              V Q++ +    AGL+KFD LGL  LT L+ + + ++   GV++ L  +P +D   Y L
Sbjct: 594  RTVLQWDKEDCADAGLVKFDLLGLGMLTALRIAFEQVSTHEGVELTLHGLPQEDPGVYRL 653

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKE 669
            L    T+G+FQ+ES      L  +QPDC  DI+  V+L RPGPI  +++  Y  RK G+E
Sbjct: 654  LCAADTIGVFQVESRAQISTLPRLQPDCFYDIVIEVALIRPGPIQGNSVHPYIARKRGRE 713

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQ 728
            K+  +HPL++  L +T GV ++QEQ+MQ++  L+ ++ +EAD LRRAMG K+  E+M+  
Sbjct: 714  KVTYLHPLLEKSLGKTLGVPLFQEQLMQMSIDLADFTPTEADALRRAMGSKRSTEKMEAL 773

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
             ER +SG  K GI +     IF+ L  FAD+GF +SHA ++A + Y +AW+K H+P  F 
Sbjct: 774  HERLLSGMEKKGIDRVAGEEIFDKLKGFADFGFPESHAYSFAYLVYASAWLKVHHPEAFY 833

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPP----SVNTPCVDFKVGDNR---IYYSLAA 841
            A  +  +       +    DAR+ ++ ++ P    S     V+   G  R   +   LA+
Sbjct: 834  AGLLAAQPMGFYSPQSLVADARRHDVPVLRPDLLASQPQAAVEPAPGSARGLAVRLGLAS 893

Query: 842  IKGVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            ++ V T  A R + E +   PF  L D   RV   +L    LE+L  AGALDC G  R +
Sbjct: 894  VRTVTTEVAERLVAERTEHGPFLDLRDLARRV---RLTTAQLEALATAGALDCLGVERRE 950

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             L           W       +  +         S  +      VE +      +    G
Sbjct: 951  AL-----------WAAGALAQERPDTLPGVSVGVSAPMLPGMSEVETAVA----DTWSTG 995

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                 +P    +P L + G    EE      G  + +  +V  +Q+  T +G     VTF
Sbjct: 996  VTTESYPTQYARPGLVRAGAITVEECRTAEEGRRVAVGGVVTHRQRPGTARG-----VTF 1050


>gi|218847814|ref|YP_002454607.1| DNA polymerase III, alpha subunit [Bacillus cereus G9842]
 gi|218546316|gb|ACK98708.1| DNA polymerase III, alpha subunit [Bacillus cereus G9842]
          Length = 1163

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 271/885 (30%), Positives = 435/885 (49%), Gaps = 117/885 (13%)

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
            Y  + + QLA     P + T +  + ++ED E HD+L+  +    ++ ++R     + ++
Sbjct: 283  YVNAVIDQLAAETNTPKILTTDVHYANKEDNEIHDILVTSSIGKCINDENRLVYAHEFWM 342

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
            K   EM+   +D+ EA +NT+ IA + +  L    P+ P FI    + +    E+ LR K
Sbjct: 343  KTEEEMLVKCNDI-EAWKNTMRIANKVNVTLP-KEPLFPNFIVDGSETV----EDLLRKK 396

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
            A  GL     + A+  G     Y +RL +EL+VI    F  YFLI  D I  A K    V
Sbjct: 397  AWDGL----FEMALTDGIDVNSYSKRLQYELDVICSEGFQDYFLIEEDMIDAAVKAGFLV 452

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
            GPGRGSGAGS+    L IT +DP++++LLFERFLNP+R   PD D+D+  +    V+ Y+
Sbjct: 453  GPGRGSGAGSLVCRCLKITWLDPIKYNLLFERFLNPERAGYPDLDVDYSYEGTRFVLNYL 512

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            + KYG ++VAQI T G+L A+A  R  G+ L +  +  D   K IP+ P   +  +A A+
Sbjct: 513  KQKYGIDKVAQIGTKGTLAARAVCRRTGKTLGLDTATQDAFAKAIPSRPGITLK-EAYAE 571

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
            +S  ++     P   +  E    LEG       HA GIV+   P++++ P+  D    + 
Sbjct: 572  ESMVQQYAQMYP---KWWEAMLALEGHVSQVGVHAGGIVLSPEPITKVTPLRTDSEG-IE 627

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT 614
             TQ++M WIEK  L+KFD L ++TL +++K+L+F    G       I  +D   +  +  
Sbjct: 628  TTQYDMVWIEKL-LVKFDVLKVETLDIVKKTLEFAGLWGKMNIYRDIDINDPLVFERVYN 686

Query: 615  KGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
               L GIFQ ES   ++ +  M+P+  EDI  +V+L RPGP+D I  Y  RK G+E++  
Sbjct: 687  ALNLSGIFQCESDLFKKIISEMKPNSFEDISVIVALGRPGPLDLIPTYVARKWGREELKY 746

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM-------- 725
                ++P+L+ET GV +YQEQ+MQ +++L G +L ++D++R+ + KK  + M        
Sbjct: 747  PFSALEPVLQETYGVWVYQEQIMQASRVLGGLTLGQSDMIRKGVSKKKHDLMNRWIDLMI 806

Query: 726  -------------------------------DKQKERFISGASKNGISKTIAVNIFELLA 754
                                           D  K+ ++ GA   G  +   + I     
Sbjct: 807  YGSEEYKKRHAELVLQYPKDAEGKPTLWVDYDYAKQPYVEGAINRGFDEQTLLQIKIDWI 866

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK-----FCQDA 809
            KF +Y FNK+H+AAYA++S  TAW+K +YPVEF++A +T      +K KK     + ++ 
Sbjct: 867  KFGNYCFNKAHSAAYALLSVVTAWLKCYYPVEFMSALLTFSERKKDKNKKPKNIYYMKEC 926

Query: 810  RQFNIQIMPPSVNTPCVDFKV-----------------------GDNRIYYSLAAIKGVG 846
             +  I I+PP +N     +                           N I Y L++I GV 
Sbjct: 927  EEMGITILPPDINESMAGWAPIKTETKGIFLANSFAGFTTETINKSNEIRYGLSSIAGVS 986

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
              T   IM+   ++P+ S+ED   RVD  K+N+  + +L+ +G+ D    +R  LL++  
Sbjct: 987  GETVDEIMQ---NRPYKSVEDMLLRVDGSKVNKTKVTALIKSGSFDNLSKNRNLLLRNYM 1043

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL----EKF-------------SVENSS 949
              +   ++    +T    +I   EK  F   IT+    EK              SVE+  
Sbjct: 1044 QFRN-EEYEHIPKTTNKGDIVDFEKECFGVSITVKSRWEKLEEGKSAQFTGVIRSVESWK 1102

Query: 950  VR---------FENEQRVLGFYFSGHPLDVYKPILR---KMGIKG 982
             R          E ++ V+     G+ ++ Y+  LR   K+ IKG
Sbjct: 1103 ARTGKTHYTLSLETQEEVIMVTVWGYLMEKYQQTLRLGNKITIKG 1147



 Score = 45.4 bits (106), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           HL VHS  S+LEG  ++ +++ K  +    A+ ITD     +  +F  +  A GI+PI 
Sbjct: 5  CHLHVHSEESVLEGLSNVKHLVAKAKSSGMTALGITDHGVCSAIPDFITECLANGIKPIP 64

Query: 72 GCQL 75
          GC++
Sbjct: 65 GCEV 68


>gi|19551870|ref|NP_599872.1| error-prone DNA polymerase [Corynebacterium glutamicum ATCC 13032]
 gi|62389529|ref|YP_224931.1| error-prone DNA polymerase [Corynebacterium glutamicum ATCC 13032]
 gi|71151824|sp|Q6M7C6|DNAE2_CORGL RecName: Full=Error-prone DNA polymerase
 gi|41324863|emb|CAF19345.1| PUTATIVE DNA POLYMERASE III ALPHA CHAIN [Corynebacterium glutamicum
            ATCC 13032]
          Length = 1055

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 293/1019 (28%), Positives = 471/1019 (46%), Gaps = 102/1019 (10%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E S  F  L   SSY+ L GA   ++++ +       A+++ D +  + A+ F++ A  A
Sbjct: 55   EASVPFAELHATSSYNFLTGASDPSDVVVQAKKLGLVALSVMDRDGFYGAVRFAEAAAEA 114

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+  + G +L   +Q+ +               + +L    EGY++L  L+S   +    
Sbjct: 115  GMHTVYGAELS--LQEGV---------------LTVLCKNPEGYKKLSHLISDAKMATGE 157

Query: 126  KQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            K  VR   L  + E      ++L G     +D+  +       E  +L F    G  +  
Sbjct: 158  KGEVRYPPLPMVAEHAAGDWVVLAGFQW--LDKIDYVIDCFKPENIVLEF----GSTMTP 211

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLS-EEDYEAHDVLMAVAHSTVVSQK 243
                   Y R  +++          P  A   S+ L+  +   A  + +A A S +    
Sbjct: 212  EDADRNEYLRRTQAKFQLRGILSTNPESAARGSVRLAGAKQALARKMPLADAESEL---- 267

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              P  T   ++++   ++    D  + +  TVE+A  C+F L + AP LP++        
Sbjct: 268  -HPMGT--TWMRSGDTLLKAHPDYADLIATTVELAAECAFTLDLVAPNLPKWDTPG---- 320

Query: 304  QKEEENELRNKAVAGLEVR-LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +  E + L +     ++ R + + A  K   A     ++D+EL VI ++ F GYFL+V D
Sbjct: 321  EHTEMSWLAHLVSTRIDTRYVGRSADIKARAAT----QIDYELGVIEKLGFPGYFLVVND 376

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++ + +NI +  GRGS A S   + L IT+ +P+   LLFERFL+PDR   PD DID 
Sbjct: 377  LVEFCRDSNI-LCQGRGSAANSAVCFVLGITNAEPISAGLLFERFLSPDRDGPPDIDIDI 435

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI+YV  KYG +  AQ+    + + K A+RD  RAL  P    D   K     
Sbjct: 436  ESGRREEVIQYVYEKYGRDNAAQVANVITYRTKGAMRDAARALGYPQGAADAWAKGTSEP 495

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P                         D +LE++ + +G  RH   H+ G+VI DRP++ +
Sbjct: 496  P-------------------------DDVLELAAQFKGQPRHLGIHSGGMVICDRPIADV 530

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+      +  V Q++      AGL+KFD LGL  L  +   LD +A+ RG K++L  +
Sbjct: 531  VPVEWARMDNRSVVQWDKDDCATAGLVKFDLLGLGMLEAIHHMLDLVAEHRGKKINLWEL 590

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
               + E Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI    V 
Sbjct: 591  DLAEPEVYDMLCKADAVGVFQVESRAQLSTLPRLKPRTFFDLVVEVALIRPGPIQGGSVH 650

Query: 661  -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG- 718
             Y  R+ G+E I   HP+++  L +T G+ ++QEQ+MQ+A   +G+S  EAD LRRAMG 
Sbjct: 651  PYLRRRAGEEAITYDHPVLEKSLGKTLGIPLFQEQLMQVAVDAAGFSGGEADSLRRAMGS 710

Query: 719  KKIKEEMDKQKERFISG-ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            K+  E M   + RF  G    NGI    A  ++  +  FA YGF +SH+ ++A + Y +A
Sbjct: 711  KRSPERMAALRSRFFQGLKDTNGIVGETAEKLWNKIVAFAAYGFPESHSQSFASLVYFSA 770

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W K HYP EF    +  +       +    DAR+  + I+P +VN   V+    +  I  
Sbjct: 771  WFKYHYPAEFCVGLLRAQPMGFYSPQSLISDARRHGVSILPITVNDSGVEADAPNGAIRL 830

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  +KG+G   A+ I +   + PFDS+ D   R D   LN   +E+L  AGA+DC G  
Sbjct: 831  GLNLVKGLGHDAAQRIED---NAPFDSIPDLSRRAD---LNVAQVEALARAGAVDCLGVG 884

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-GTFSDKITLEKFSVENSSVRFE--- 953
            R Q L           W           + A EK G       +E  ++   S  FE   
Sbjct: 885  RRQAL-----------W--------QAGVAATEKPGMLPGLSVIEAPALPGMSA-FELMA 924

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
                  G      P+ + +  + ++GI   +  +    G  +R+A +V  +Q+ +T  G
Sbjct: 925  TNISATGVTADYQPMALIRERMEELGIVPADRLLEVEDGTRLRIAGIVTHRQRPQTASG 983


>gi|21323403|dbj|BAB98031.1| DNA polymerase III alpha subunit [Corynebacterium glutamicum ATCC
            13032]
          Length = 1004

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 293/1019 (28%), Positives = 471/1019 (46%), Gaps = 102/1019 (10%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E S  F  L   SSY+ L GA   ++++ +       A+++ D +  + A+ F++ A  A
Sbjct: 4    EASVPFAELHATSSYNFLTGASDPSDVVVQAKKLGLVALSVMDRDGFYGAVRFAEAAAEA 63

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+  + G +L   +Q+ +               + +L    EGY++L  L+S   +    
Sbjct: 64   GMHTVYGAELS--LQEGV---------------LTVLCKNPEGYKKLSHLISDAKMATGE 106

Query: 126  KQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            K  VR   L  + E      ++L G     +D+  +       E  +L F    G  +  
Sbjct: 107  KGEVRYPPLPMVAEHAAGDWVVLAGFQW--LDKIDYVIDCFKPENIVLEF----GSTMTP 160

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLS-EEDYEAHDVLMAVAHSTVVSQK 243
                   Y R  +++          P  A   S+ L+  +   A  + +A A S +    
Sbjct: 161  EDADRNEYLRRTQAKFQLRGILSTNPESAARGSVRLAGAKQALARKMPLADAESEL---- 216

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              P  T   ++++   ++    D  + +  TVE+A  C+F L + AP LP++        
Sbjct: 217  -HPMGT--TWMRSGDTLLKAHPDYADLIATTVELAAECAFTLDLVAPNLPKWDTPG---- 269

Query: 304  QKEEENELRNKAVAGLEVR-LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +  E + L +     ++ R + + A  K   A     ++D+EL VI ++ F GYFL+V D
Sbjct: 270  EHTEMSWLAHLVSTRIDTRYVGRSADIKARAAT----QIDYELGVIEKLGFPGYFLVVND 325

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++ + +NI +  GRGS A S   + L IT+ +P+   LLFERFL+PDR   PD DID 
Sbjct: 326  LVEFCRDSNI-LCQGRGSAANSAVCFVLGITNAEPISAGLLFERFLSPDRDGPPDIDIDI 384

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI+YV  KYG +  AQ+    + + K A+RD  RAL  P    D   K     
Sbjct: 385  ESGRREEVIQYVYEKYGRDNAAQVANVITYRTKGAMRDAARALGYPQGAADAWAKGTSEP 444

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P                         D +LE++ + +G  RH   H+ G+VI DRP++ +
Sbjct: 445  P-------------------------DDVLELAAQFKGQPRHLGIHSGGMVICDRPIADV 479

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+      +  V Q++      AGL+KFD LGL  L  +   LD +A+ RG K++L  +
Sbjct: 480  VPVEWARMDNRSVVQWDKDDCATAGLVKFDLLGLGMLEAIHHMLDLVAEHRGKKINLWEL 539

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
               + E Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI    V 
Sbjct: 540  DLAEPEVYDMLCKADAVGVFQVESRAQLSTLPRLKPRTFFDLVVEVALIRPGPIQGGSVH 599

Query: 661  -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG- 718
             Y  R+ G+E I   HP+++  L +T G+ ++QEQ+MQ+A   +G+S  EAD LRRAMG 
Sbjct: 600  PYLRRRAGEEAITYDHPVLEKSLGKTLGIPLFQEQLMQVAVDAAGFSGGEADSLRRAMGS 659

Query: 719  KKIKEEMDKQKERFISG-ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            K+  E M   + RF  G    NGI    A  ++  +  FA YGF +SH+ ++A + Y +A
Sbjct: 660  KRSPERMAALRSRFFQGLKDTNGIVGETAEKLWNKIVAFAAYGFPESHSQSFASLVYFSA 719

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W K HYP EF    +  +       +    DAR+  + I+P +VN   V+    +  I  
Sbjct: 720  WFKYHYPAEFCVGLLRAQPMGFYSPQSLISDARRHGVSILPITVNDSGVEADAPNGAIRL 779

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  +KG+G   A+ I +   + PFDS+ D   R D   LN   +E+L  AGA+DC G  
Sbjct: 780  GLNLVKGLGHDAAQRIED---NAPFDSIPDLSRRAD---LNVAQVEALARAGAVDCLGVG 833

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-GTFSDKITLEKFSVENSSVRFE--- 953
            R Q L           W           + A EK G       +E  ++   S  FE   
Sbjct: 834  RRQAL-----------W--------QAGVAATEKPGMLPGLSVIEAPALPGMSA-FELMA 873

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
                  G      P+ + +  + ++GI   +  +    G  +R+A +V  +Q+ +T  G
Sbjct: 874  TNISATGVTADYQPMALIRERMEELGIVPADRLLEVEDGTRLRIAGIVTHRQRPQTASG 932


>gi|116878540|ref|YP_357154.2| DNA polymerase III subunit alpha [Pelobacter carbinolicus DSM 2380]
 gi|114843176|gb|ABA88984.2| DNA polymerase III, alpha subunit [Pelobacter carbinolicus DSM 2380]
          Length = 1047

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 310/1040 (29%), Positives = 485/1040 (46%), Gaps = 100/1040 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VHS++S   G  S   +     A     +A+TD N ++    F + A  AGI P+
Sbjct: 35   FTHLHVHSAFSPNWGIHSPATLCAAAKAAGMTRLALTDRNGMYGIPCFLEAAQKAGIAPL 94

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +     Q                   VLL    +GY  L  L+S ++  D     + 
Sbjct: 95   IGAEAVSGSQ-----------------RAVLLARNQDGYANLCRLLSALH--DPQPFDLA 135

Query: 131  ICL-SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            + L +W      EGL +L+       D A      ++AE+          + L+V     
Sbjct: 136  VALATW-----REGLYILS-------DNAAVLG--RLAEQSR--------EGLFVETS-- 171

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                 +R  Q + LA    LP VAT+ ++FL   D + H VL A+A +T +S+       
Sbjct: 172  ---PGHRMEQAMFLARRLGLPPVATSRAVFLQNADIKTHRVLRAIAGNTTLSRLSAETCA 228

Query: 250  -PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             P  +L+  +++ + F   PEALEN   IA  C       A I PRF       +  ++ 
Sbjct: 229  GPADFLRAETDLKAAFPHYPEALENAARIADNCQTNWDFSATIFPRF-----RGLADQQA 283

Query: 309  NELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + L       LE R  +GAI + G        RL  EL +I    F+ YFL+V +    A
Sbjct: 284  STL-------LERRAHEGAIRRYGEMNTKIAARLSKELTIIRDKGFAHYFLVVQEL---A 333

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K++  P   GRGS A S+ AY L IT +DPLR++L FERFLN  R+  PD DIDF  D R
Sbjct: 334  KRS--PRTCGRGSAAASLVAYCLGITHVDPLRYNLFFERFLNKGRIDPPDIDIDFPWDER 391

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D V+ +   +YG++R A +      +++ ALR+V +   MP  ++  + + + +  +   
Sbjct: 392  DAVLDFAFQRYGNQRAAMVANQVGFKSRGALREVAKVFGMPADEIKTITRRLSSHWSIQR 451

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+     FR   L+    D +L I+ +L G  RH S H  G+VI    + Q VP   
Sbjct: 452  GTKAMDSHPLFRGESLSSDWQD-ILAIATRLNGQLRHLSQHCGGLVIVPDDIRQYVPTEV 510

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL-SLIPFDD 605
              +   P+ Q+     E AGL+K D LG ++L +++ +L  +    G  +D  +  P  D
Sbjct: 511  SAKGR-PLIQWEKDQTEAAGLVKIDILGNRSLAVIRDALTAVHHHTGNNIDYRNWQPLTD 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGM-----QPD---CIEDIIALVSLYRPGPIDN 657
             +T  LL +  T+G F +ES   RQ L+ M      PD     E ++   S+ RP   + 
Sbjct: 570  AKTRALLCSGDTIGCFYIESPATRQLLKKMWGNRPMPDEDTLFEHLVMASSIIRPAANNV 629

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  R +GK     +HPL++P+L ET G+ +YQEQ+ QIA  LSG+S SE D LR+ +
Sbjct: 630  IREFVARMHGK-PWHHLHPLLEPILDETYGLAVYQEQITQIAMALSGFSASEGDRLRKII 688

Query: 718  GKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             KK K + +D  ++RF+ G ++NGIS  +   I++ +  FA Y F K H+A+YA++S + 
Sbjct: 689  SKKDKGKTLDDYRQRFMQGGNRNGISAAVLKKIWQQVLSFAGYSFCKPHSASYALVSCKA 748

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            AW+K ++P EF+AA ++        +  +  +AR+  + I+ P +NT    ++  D  + 
Sbjct: 749  AWLKANHPAEFMAAVISNGGGYYTPL-GYLSEARRMGLHILTPDINTSDRAYRGKDRDLR 807

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L  I  V   T   I+ E   + PF   E+F  R+    L    ++ L+ AG  D   
Sbjct: 808  IGLMQIAAVAQATIEVILNERRKNGPFSDYENFLWRL--PHLPVADIKQLIKAGCFDALE 865

Query: 896  YS--RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
             S  R  L+  L  +Q       +      + +F  E          +  +++       
Sbjct: 866  GSEQRPGLIWRLLQLQ-------RGPATAADTLFVTEPEPPPVLPPYDAVTLQT------ 912

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E   LG     HPL  Y   +R  G     E    I G +I L    V+ +  +T KG 
Sbjct: 913  QELETLGMPVGSHPLVPYAEAIRSSGAVPAAELSRWI-GRHITLVGWWVTGKPVRTVKGQ 971

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             + +VTF +    ++A FFP
Sbjct: 972  PMEFVTFEDATALFDATFFP 991


>gi|313498875|gb|ADR60241.1| DnaE2 [Pseudomonas putida BIRD-1]
          Length = 1026

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 298/1030 (28%), Positives = 470/1030 (45%), Gaps = 95/1030 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S   GA S + +  +       A+AITD   L   +   Q A    ++
Sbjct: 4    PGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVHQLR 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G   ++ + D               P +VLLV    GYQ L  L++R       +++
Sbjct: 64   LIVGS--EVQLCDG--------------PKLVLLVENLTGYQNLCALITRAR-----RRA 102

Query: 129  VRICLSWLQE---IGTEGLIML-TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +      ++   +  +GL+ L     SG      +  S             +F +RL++
Sbjct: 103  EKGAYQLFRDDLLLHHQGLLALWVAADSGDTATGVWLRS-------------VFAERLWL 149

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +  HRG D   R  ++  LA    +  VA  +            D + A+     VS+ 
Sbjct: 150  AVHLHRGSDDAMRLQRLRALAADVGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVSEA 209

Query: 244  DR-PRVTPDHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             R      + +L++++++  ++  DL   L  T+ IARRC F L       PR +  E  
Sbjct: 210  GRFLFANGERHLRSQAQLAELYPLDL---LAETLVIARRCQFDLSELNYQYPRELVPE-- 264

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                   + LR     G+ +R   G   K       R  L  EL +I  + +  YFL V 
Sbjct: 265  --GHTPASWLRELCEQGMPLRWPDGPSGK------VRAVLAKELGLIEELGYESYFLTVH 316

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A+   I +  GRGS A SV  + L IT++DP++  LLFERFL+ +R   PD D+D
Sbjct: 317  DIVAFARSQRI-LCQGRGSAANSVVCFVLGITELDPMKHHLLFERFLSRERNEPPDIDVD 375

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  DRR+EVI+YV  +YG  R A      +  A  A+RDV R L +P  QVD L K    
Sbjct: 376  FEHDRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARVLGLPADQVDALAKCCGR 435

Query: 482  DPAHPVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                      I DD R  EA      PS+ R+L ++ +L G  RH S H  G VI  +PL
Sbjct: 436  ------WSDRIPDDQRLAEAGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQPL 489

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDL 598
             QLVP+      +  V Q++   ++  GL+K D L L  L+ L++  D L   RG  + L
Sbjct: 490  DQLVPVENAAMPERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLLQHHRGRHLTL 549

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
            + IP +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D
Sbjct: 550  ATIPSEDPATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAIVRPGPIQGD 609

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+  +E +    P +  + + T GV ++QEQVM++A + + Y+  EAD LRR+
Sbjct: 610  MVHPYLRRRLKQEPVTYPSPQLKEVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRRS 669

Query: 717  MGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M   K    ++  +ER + G  +NG +   A  IFE +  F  YGF +SHAA++A++ Y 
Sbjct: 670  MAAWKRHGGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHAASFALLCYA 729

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----- 830
            ++W+K H P  F  A +           +  Q+AR+  I++ P  V     D  +     
Sbjct: 730  SSWLKCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPDAQ 789

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            G   I   L  ++G+    AR + +A A +P+ ++ED C R     L+ R    L   GA
Sbjct: 790  GTLAIRMGLRLVRGLAEADARRVQQARAQRPWRNVEDLCLRAG---LDARARARLADGGA 846

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            L      R Q           A+W +         +FA  +    + + L   +V     
Sbjct: 847  LRALASDRHQ-----------ARW-QVAAVQPQLPLFADVQALPEEPVQLPVPTVGED-- 892

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                + + LG     HPL + +  LR +G +   E      G+NI +A +VV +Q+ +T 
Sbjct: 893  -LMADYQTLGTTLGPHPLALLRSRLRALGCRSSSELQGVEHGDNIAVAGLVVGRQRPQTA 951

Query: 1011 KGSRIGWVTF 1020
             G     VTF
Sbjct: 952  SG-----VTF 956


>gi|212695654|ref|ZP_03303782.1| hypothetical protein ANHYDRO_00171 [Anaerococcus hydrogenalis DSM
            7454]
 gi|212677327|gb|EEB36934.1| hypothetical protein ANHYDRO_00171 [Anaerococcus hydrogenalis DSM
            7454]
          Length = 754

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/645 (33%), Positives = 354/645 (54%), Gaps = 30/645 (4%)

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD DIDFC + RD V+ YV + YG + V+QI+TFG ++A+ A+RDVGR + + + +VD+
Sbjct: 1    MPDIDIDFCYENRDRVVDYVYDLYGKDHVSQIVTFGRMKARNAIRDVGRVMDISFKKVDK 60

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            + KLIP      +  +A+ +  +       D    R+++ ++ +E L RH S HAAG+VI
Sbjct: 61   IAKLIPQAIGMTID-KALENTEKLAYEYENDVETKRMIDTARNIENLPRHTSIHAAGVVI 119

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRG 593
                L+ +VP+   + +D  VTQFNM  IE+ GL+K DFLGL+ LT++Q ++ D    + 
Sbjct: 120  SKEILTDIVPLA--LSNDQIVTQFNMTEIEELGLLKMDFLGLRNLTVIQDTIKDVKKYKN 177

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            + ++L  I  +D +         T+GIFQ ES+GMR  L+ ++P   +D++A  SL+RPG
Sbjct: 178  IDINLDNIDENDPKVLEQFRKAETIGIFQFESAGMRNFLKNLKPTRFDDLVAANSLFRPG 237

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  Y   K   + +  I P + P+L+ T G+I+YQEQVMQI Q L+G+SL EAD L
Sbjct: 238  PMDQIPNYIKNKMHPQNVSYIDPSLKPILEVTYGIIVYQEQVMQIVQQLAGFSLGEADNL 297

Query: 714  RRAMGKKIKEEMDKQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGF 761
            RRAM KK    M+  +E F+ G               NGIS+  A  I++ +  FA Y F
Sbjct: 298  RRAMSKKKMSVMEANREIFVHGKKDAKGNYEVLGCVNNGISEKNANKIYDEMISFAKYAF 357

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NKSH+AAY++++ QTA++K ++  E++A  +T  M +  K+  +  +A++  I+I+PP +
Sbjct: 358  NKSHSAAYSLVAIQTAYLKCYFKEEYMANLLTSIMGDSSKVYLYISEAKRLGIEIVPPDI 417

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---DSKKLN 878
            N     F    N+I + ++AIK VG      I++   +K + + +DF  R+   D   LN
Sbjct: 418  NKSERRFIAEKNKIIFGMSAIKNVGDNLIDLIVKIRDEKKYKTFKDFLERIEANDPTALN 477

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSD 936
            ++ LESL+ +GA D  GY R +L+   +   +     EK       N+  F  +     D
Sbjct: 478  KKALESLIKSGAFDSLGYKRSELIAVHETALQSIHDNEKVNLKGQMNLLDFDQKDQNEQD 537

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR----- 991
             I     +   +  +   E+ VLGFY S HPL+     ++K       E ++ +R     
Sbjct: 538  DIKFPPVNEYKNKQKLSLEKEVLGFYISDHPLNSLSDRVKKY-TNFSTEILSELRPIDLD 596

Query: 992  ---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  + +A ++ +K +  T+K + + + T  +     E   FP
Sbjct: 597  KYDNKEVVMAGVITNKSETMTKKNTLMAFSTLEDMYGSIEMIIFP 641


>gi|256394376|ref|YP_003115940.1| DNA polymerase III subunit alpha [Catenulispora acidiphila DSM
           44928]
 gi|256360602|gb|ACU74099.1| DNA polymerase III, alpha subunit [Catenulispora acidiphila DSM
           44928]
          Length = 1127

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 290/947 (30%), Positives = 457/947 (48%), Gaps = 85/947 (8%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L  HS +S L+GA S   ++ + A      +A+TD +    A+++ Q A  A + 
Sbjct: 52  PPYAELHAHSHFSFLDGASSPAELVAEAARLGLHGLAVTDHDGFAGAMQYKQAAEDAELA 111

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            + G +L ++    L     G T  P    +++L   AEGY+RL   + +  L  Q K  
Sbjct: 112 TVFGAELSLE----LTAARTGVTD-PAGSHLLVLARRAEGYRRLSAAIGKAQLAGQEKGK 166

Query: 129 VRICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSS-----QVAEKRLLTFKKLFGDR- 181
               L  L E   +G   +LTG   G + +A   +       + A+  L     LFGDR 
Sbjct: 167 PVYVLDDLAEAAADGDWTILTGCRKGTVRQALERHGLTEAGFEAADAELRKLMDLFGDRN 226

Query: 182 LYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTV 239
           + + L  H +  D  R   + +LA  H LP VAT N  +    DY  H  + A+ A  T+
Sbjct: 227 VLIELTDHDQPLDDARNRLLARLAARHGLPTVATGNVHYARPADYRLHTAMAALRARRTL 286

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                     P  YL++ +EM++ F   +   A+  + E+A   +F  +   P LP +  
Sbjct: 287 AEMDGWLPGAPTAYLRSGAEMLARFPVHEFGRAVVRSAELAADHAFDFKTINPQLPDYPV 346

Query: 298 KECDDIQKEEENELRNKAVAGLEVRL-AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            E       E + LR+    G   R  ++    K YH      ++ +EL+VI ++KF GY
Sbjct: 347 PE----GHTEASWLRHLTYLGAAQRYGSESENPKAYH------QIAYELDVIEQLKFPGY 396

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
           FLIV D  ++ +   I +  GRGS A S   +AL IT +D +R  L+FERFL+P R   P
Sbjct: 397 FLIVYDIAEFCRAQGI-LAQGRGSAANSAVCFALGITSVDSVRHGLVFERFLSPVRDGPP 455

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           D D+D    RR++VI++V  KYG +R A +    + +A+ ALRD  R L      VD   
Sbjct: 456 DIDVDIEAGRREDVIQHVYAKYGRDRAAMVCNVITYRARLALRDSARVLGYSPGTVDAWA 515

Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
             I      P   + I                +++LE++ +L+   RH   H  G+VI D
Sbjct: 516 GTIGPHEGVPDGSEEIP---------------EQVLELAGRLQRRPRHLGIHNGGMVIVD 560

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595
           RPL+Q+VP+    R    V Q++      AGL+KFD LGL  L  +  +LD +A+  G +
Sbjct: 561 RPLAQVVPIEWARREGRTVLQWDKDDCAAAGLVKFDLLGLGMLGAIHDALDLIAEHHGTR 620

Query: 596 VDLSLIPFD-DHET---YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
           + L  +P D D E    Y ++    T+G+FQ+ES      L  ++P C  D++  V+L R
Sbjct: 621 LGLHDLPQDGDPEADAVYAMIQDADTVGVFQIESRAQMVTLPRLKPKCFYDLVVEVALIR 680

Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
           PGPI    V  Y  R+NG E++   HP ++P+L+ T GV+++QEQ MQ+A   +G+S +E
Sbjct: 681 PGPIQGGAVHPYLRRRNGDEEVTYPHPTLEPVLERTLGVVLFQEQAMQMAIAAAGFSAAE 740

Query: 710 ADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
           AD LR+AMG K+  E M + KER ++G ++ GI+     +I+  L  F+ YGF +SH+ +
Sbjct: 741 ADRLRQAMGSKRSPERMAELKERLMAGMAERGITPETGEDIYAKLHAFSGYGFPESHSVS 800

Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------ 822
            A I + + ++K +YP  F AA +  +            D R+  +Q+    VN      
Sbjct: 801 MAYIVWCSCYLKRYYPAAFTAALLNNQPMGFYSPGSLVTDVRRHGVQVKRVDVNASGAKA 860

Query: 823 ---TPCVDF---------------------KVGDNRIYYSLAAIKGVGTTTARHIM-EAS 857
              +P   +                      +    +   L++++ +G   A  ++ E +
Sbjct: 861 TLQSPDKPYGSGSGSGSGSGSDRTRHRHASPIAQPAVRLGLSSVRDLGDDAAEQVVAERT 920

Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
           A  PF  +EDF  R     L+R  LE+L  AGA  CFG  R + L +
Sbjct: 921 AGGPFTGVEDFIVRT---GLSRSTLEALATAGAFGCFGLDRREALWT 964


>gi|148272699|ref|YP_001222260.1| DNA polymerase IIIsubunit alpha [Clavibacter michiganensis subsp.
            michiganensis NCPPB 382]
 gi|147830629|emb|CAN01565.1| DNA polymerase III, alpha chain [Clavibacter michiganensis subsp.
            michiganensis NCPPB 382]
          Length = 1140

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 315/1106 (28%), Positives = 506/1106 (45%), Gaps = 119/1106 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL V S++S   G  +   ++D++A++  PA AITD + L+ A+   +++ AAG+ P
Sbjct: 2    SFTHLHVASAFSAHFGTSAPEALVDRVASEGAPAAAITDRDGLYGAVRHIRRSLAAGVSP 61

Query: 70   IIGCQLDIDMQDNLKMT--NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            ++G +L +  +   ++T    G T      ++  L+S + G        S       G  
Sbjct: 62   VVGAELGLTGEHPGRITVLAHGGTRGQGWAALSRLISASHGRG---TARSTARSAQAGIA 118

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R     L E G  G +ML  G    + RA       +A + L  + +L    + V + 
Sbjct: 119  RTRPPAFLLGEDGPVGTVML--GPDSDVGRAVAAGDHALASRHLAEWARLLPGAVVVEVV 176

Query: 188  RH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
             H             +++++LA  H +P V TN   +L  +D    DVL A      +  
Sbjct: 177  CHFTEPGESASLRHAARMLELADAHRVPAVLTNAVRYLEPDDALTGDVLDAAGTLRPLGS 236

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARRCSFI----LQV 287
              RP+     +LK  +EM  I  ++  A           L  T E+A RC       L  
Sbjct: 237  F-RPQPNGQAWLKTPTEMQGIAREIAGASSLDRRAGEALLRATEELADRCRLDPDADLAW 295

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR----LDF 343
              P LP   EK    +  + +  L  KA AG+  R        G+  +  RQR    +  
Sbjct: 296  RKPKLP---EKSVIGVTGDPDEALWRKAEAGVTERF-------GHVDEAMRQRVLARMRT 345

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL  I    F+ YFL VAD     +   +     RGSGAGS+  Y L I+++DPL   LL
Sbjct: 346  ELTTITGFGFATYFLTVADVCALMRDMGV-RNQARGSGAGSLVNYLLRISNVDPLEHDLL 404

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFL   R ++PD DID    RR EV   V  KYG  RV  +    + +A+ A RD G 
Sbjct: 405  FERFLGKVRSTLPDIDIDVESARRHEVYHRVFEKYGSNRVTLLSMQNTYRARGAARDAGL 464

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEIS 515
            AL +   Q+D + K I    A            L+ IAD  R       DPS+D L++++
Sbjct: 465  ALDLDEQQIDFIAKNIWRFNAREFRAVLETKPELKPIADLVR------DDPSIDLLVDLT 518

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            ++L+ L RH S H  G+++GD  L    P+ +     LP++QF+   I+  GL+K D LG
Sbjct: 519  ERLDRLPRHISMHPCGVILGDSDLLSTSPV-QPSGMGLPMSQFDKDDIDDMGLLKLDILG 577

Query: 576  LKTLTLLQKSLDFL--------------------AQRGVKVDLSLIPFDDHETYHLLTTK 615
            ++  + +  +LD +                      R  +++L  IP DD ET+  + T 
Sbjct: 578  VRMQSTMAYALDEIHRIHGARSAVAGGIPVDARYVHRDGRIELDEIPHDDEETFAAIRTT 637

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS 673
             TLG+FQ+ES G R+ +  MQPD  ED+IA VSL+RPGP+   +V  + + K+G      
Sbjct: 638  HTLGMFQIESPGQRELIGKMQPDVYEDLIADVSLFRPGPMKGNMVAPFLDTKHGITLPDY 697

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK---IKEEMDKQKE 730
            +HP   P L  T GV+IY EQV++I       SL+EAD LRR M +    +++   ++  
Sbjct: 698  LHPRFAPFLAPTFGVVIYHEQVIRIFADCMQVSLAEADELRRNMERMDTVVEQAFRERTA 757

Query: 731  RFISG-ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              + G   +   S      I++ L  F  +GF K+H AA+A+ ++Q+AW+KTHYP EFLA
Sbjct: 758  MHVDGRTGRRPFSDADVERIWKALKGFGSFGFCKAHGAAFALPTWQSAWLKTHYPAEFLA 817

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--------------GDNRI 835
              +T +     K +    +AR+  + ++P  VN     ++V              G+  I
Sbjct: 818  GILTHDPGMYPK-RLLLTEARRMGVPVLPLDVNRSRGVYRVERVDGGETTGRTRIGELGI 876

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              SL  + G+       I      +P+DS+ DF ++    + +R +LE L   GALD   
Sbjct: 877  RLSLQDVHGMSEAELERIERG---QPYDSISDFYAKA---QPSRALLERLAAVGALDPLA 930

Query: 896  YSR----MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF----SDKITLEKFSVE- 946
             +      +   S  ++  Y +     R        A   G       D+  + + S + 
Sbjct: 931  TNEDDRAARGAASRGDVMAYVR-----RLTARAARPADPAGQLPLFVDDRDLIPRGSPDP 985

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +   R   E  +L    + H L+ Y+P+L ++G+    + +    G+ + +A + ++ Q 
Sbjct: 986  DGRARVAAELDILQMEVTEHVLESYRPMLDELGVIPASQLLEVRSGSEVVVAGIRIATQT 1045

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
               R G R+ +++  +     ++ FF
Sbjct: 1046 PPMRSGKRVVFISLDDGTGCSDSTFF 1071


>gi|238029059|ref|YP_002913284.1| DNA polymerase III, alpha subunit [Burkholderia glumae BGR1]
 gi|237880636|gb|ACR32964.1| DNA polymerase III, alpha subunit [Burkholderia glumae BGR1]
          Length = 1049

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 303/1029 (29%), Positives = 484/1029 (47%), Gaps = 87/1029 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQ  S++S L GA     ++++ A     AIAITD  +L   +    +A AAG+ 
Sbjct: 10   PAYAELQCASNFSFLHGASRAEELVERAARLGYSAIAITDECSLAGVVRAHVEAKAAGLP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG         + ++T+   +P     +   L    EGY  L EL++ +      K +
Sbjct: 70   LIIG--------SHFQLTSADGSP---ALAFTALAMNREGYGNLCELIT-LARTRGAKGT 117

Query: 129  VRICLSWLQEIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             R+    L+      L  L G      I    F  + Q  + ++  F  +FGDR  V L 
Sbjct: 118  YRLAPLDLEHPEAP-LTHLRGLPDCMTILTPDFPANEQRLDAQIEWFAAVFGDRARVALT 176

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H R  D      V + A  + +P+VAT+  +          DVL A+     V +    
Sbjct: 177  LHARAMDDIHRGAVERAAARYGVPVVATSWPVMHVRSRKPLQDVLTAIRLGRSVRECGY- 235

Query: 247  RVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             + P  + +L++R  + +++     ALE TV +ARRC+F L               D+++
Sbjct: 236  ELAPNAERHLRSRLRLSNLYP--AGALEETVRVARRCTFSL---------------DELR 278

Query: 305  KEEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             E  +EL           R +   G   R   G     +H Q    +++ EL +IA++K+
Sbjct: 279  YEYPDELVPAGYSPASYLREQTYIGAHARFPGGI---PFHVQ---AQIEHELQLIAKLKY 332

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL V D +++A+  NI +  GRGS A S   Y L +T++DP R ++LFERF++ +R 
Sbjct: 333  EPYFLTVYDIVRFARSQNI-LCQGRGSAANSAVCYCLRVTEVDPARGNMLFERFISCERN 391

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D+DF   RR+EV++Y+  KYG +R A      + + + ALR+ G+AL +    VD
Sbjct: 392  EPPDIDVDFEHQRREEVMQYIYAKYGRDRAALTAAVSTYRPRGALREAGKALGVDPIIVD 451

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAG 531
            R+ K      AH          +RF EA L    P   +    +  L G  RH S H+ G
Sbjct: 452  RVAK------AHHWFDSKADLLARFAEAGLDVEAPLNQQWAAFATALLGYPRHLSQHSGG 505

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             VI    LS++VP+     +D  + Q++   IE  G++K D L L  L++++++L+ +++
Sbjct: 506  FVISRTKLSRMVPIENAAMADRTIIQWDKDDIEALGILKVDILALGMLSMVRRALEMISE 565

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
             RG   +L  IP +D  TY +L    ++G+FQ+ES      L  +QP C  D++  V++ 
Sbjct: 566  KRGEPFELQDIPPEDAATYAMLCEGDSMGVFQVESRAQMSMLPRLQPRCFYDLVIEVAIV 625

Query: 651  RPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+   +V+    R+ G E +    P ++  LK T GV I+QEQVMQ+A L +G+S  
Sbjct: 626  RPGPVQGGMVHPFLRRRQGLEPVTFPSPDVEKALKRTLGVPIFQEQVMQVAMLAAGFSAG 685

Query: 709  EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EAD LRRAM   K K  ++    R + G    G  +  A  IF  +  F DYGF +SHAA
Sbjct: 686  EADQLRRAMAAWKRKGGLEPYHARLVEGMLARGYDRDFAEAIFAQIKGFGDYGFPESHAA 745

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++A++ Y +AW++ H P  FLAA +  +        +  QDAR+ +++I+P  V     D
Sbjct: 746  SFALLVYASAWLRRHEPGVFLAALLNSQPMGFYTPSQLLQDARRRSVRILPVDVTISTWD 805

Query: 828  FKV-GDNR---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
              + GD     +   ++ IKG+    A  I  A + +PF  + D   R     L+R  L+
Sbjct: 806  STLEGDTTAAPVRVGMSLIKGMRAEAAARIELARSVRPFADVADLARRA---ALDRHDLQ 862

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
             L  AGAL                 ++ A W+        + +    +GT  D       
Sbjct: 863  VLAAAGALRSLA----------GGNRRDALWLAAAAVPGRDLL----RGTERDDAA-PAL 907

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
               +      ++ R +GF    HPL++ +  LR   +    E      G   R   +V  
Sbjct: 908  PQASEGRELVSDYRSMGFTLGRHPLELLRARLRTDRLLPAAELAQLRNGQFARACGIVTV 967

Query: 1004 KQQKKTRKG 1012
            +Q+  T KG
Sbjct: 968  RQRPGTAKG 976


>gi|190574832|ref|YP_001972677.1| error-prone DNA polymerase [Stenotrophomonas maltophilia K279a]
 gi|190012754|emb|CAQ46383.1| putative DNA polymerase III alpha subunit [Stenotrophomonas
            maltophilia K279a]
          Length = 1036

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 300/1033 (29%), Positives = 477/1033 (46%), Gaps = 93/1033 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S   GA     +  + A     A+AITD  +L   +   Q A A G+ 
Sbjct: 6    PGYAELHCLSAFSFQRGASIAEELFARAAGQGYRALAITDECSLAGIVRAWQAAKAHGVA 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  ++                  P + LL +    Y  L +L++        +++
Sbjct: 66   LIVGAEFQVE----------------DGPKLALLCTDQAAYAGLCQLITTCR-----RRA 104

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +     L+E        L       +DR       Q A   L   +  F DRL++ ++ 
Sbjct: 105  AKGEYRCLREDLLGLPDGLLCLW---LDR-------QPAATDLELLRAGFNDRLWLAVEL 154

Query: 189  HRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H  +D  R  Q +Q     H L LVA+ +            D L A+ H   V++    R
Sbjct: 155  HHEHDDARRLQQLQAFGERHRLTLVASGDVHMHVRRRRALQDTLTAIRHRCSVAEAGW-R 213

Query: 248  VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            + P  + +L+ R+ +  ++    E L  T+ IA RC F L+      PR +  E  D   
Sbjct: 214  LFPNGERHLRPRTALAQLYP--AELLAETLRIAERCHFTLEQLQYTYPRELVPEGHD--- 268

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              ++ LR      +  R  +G           R++++ EL +I    ++ YFL V D ++
Sbjct: 269  -PDSWLRELVEEKIPWRWPEGI------KDAQRKQIEHELALIREKNYASYFLTVHDIVR 321

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S   + L +T+IDP R +LLFERF++ +R   PD DIDF  +
Sbjct: 322  FARSQDI-LCQGRGSAANSTVCFVLGVTEIDPARSNLLFERFISAERNEPPDIDIDFEHE 380

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV++YV  +YG ER A      S + ++A+RDV RAL +P  QV+ L   +     H
Sbjct: 381  RREEVLQYVFKRYGRERAALTAVAISYRGRSAIRDVARALGLPMDQVNELGAAMD----H 436

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                  + +  R R      P + RLL ++ +L    RH S H  G VI + PLS LVP+
Sbjct: 437  WGGNIPLPETLRERGFDPDTPLMRRLLALTAELIDFPRHLSQHPGGFVISEHPLSTLVPV 496

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFD 604
                 +D  V Q++   ++  GL+K D L L  LT ++K L  L Q G+ +  +  IP +
Sbjct: 497  ENAAMADRTVIQWDKDDLDATGLMKVDCLALGMLTAIRKCLAMLKQHGLHEGRMDAIPDE 556

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN- 663
            D  TY ++    T+G+FQ+ES      L  MQP    D++  V++ RPGPI   +V+   
Sbjct: 557  DGPTYDMICAADTIGVFQIESRAQMAMLPRMQPREFYDLVIEVAIVRPGPIQGDMVHPYL 616

Query: 664  ------RKNGKEKIVSI-HPLIDPMLK----ETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                  R+ G + +    +PL  P L+     T GV ++QEQVMQ+A   +GY   EAD 
Sbjct: 617  ERRRILREQGPDALNDPDNPLYPPQLERVFARTLGVPLFQEQVMQLAVEAAGYEPGEADA 676

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRR+M   K +  ++  +E+ ++G  KNG S     ++FE +  F DYGF +SHAA++A+
Sbjct: 677  LRRSMAAWKRRGGLEPHREKLLTGMLKNGFSLEYGEHLFEQIKGFGDYGFPESHAASFAL 736

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV---NTPC-VD 827
            ++Y + W+K H+P  F A+ +  +        +  QDAR+  I+++P  V   +  C +D
Sbjct: 737  LTYASCWLKCHHPAAFTASLINSQPLGFYSPDQLLQDARRHGIRVLPVDVRHSDWDCTLD 796

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            F  G   I   L  + G      + IM   A +PFD + D C R     L+RR    L  
Sbjct: 797  FSRGAAAIRLGLRLVDGCNEPDVQAIMRERARRPFDDVGDLCQRT---ALDRRQQGLLAD 853

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGA           L+ L   +  A+W      N+   +F   + T   ++ L   S   
Sbjct: 854  AGA-----------LRGLSGHRHRARWDISGVENR-LPLFDQARATAEARVPLPLPSAWE 901

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                 + + R  G     HP+   +  LR  G     + V    G  +R+A +V  +Q+ 
Sbjct: 902  D---MQADYRSTGTTLGRHPISFLRAQLRSRGCLDAAQLVDHGHGRRVRIAGLVRMRQRP 958

Query: 1008 KTRKGSRIGWVTF 1020
            +T  G     VTF
Sbjct: 959  QTASG-----VTF 966


>gi|229591045|ref|YP_002873164.1| error-prone DNA polymerase [Pseudomonas fluorescens SBW25]
 gi|229362911|emb|CAY49821.1| putative DNA polymerase III alpha subunit [Pseudomonas fluorescens
            SBW25]
          Length = 1030

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 304/1028 (29%), Positives = 474/1028 (46%), Gaps = 93/1028 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L   S++S   GA S   + ++       A+AITD   L   +   Q A A  +  
Sbjct: 9    SYAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLAGIVRAWQAAKAVELPL 68

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ I+                  P +VLLV    GYQ L  L++ +      K S 
Sbjct: 69   IIGSEVRIE----------------NGPKLVLLVEDLSGYQHLCRLIT-LARRRAEKGSY 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+ L    +    GL+            A +       +  +   ++ F +RL++ +  H
Sbjct: 112  RLLLEDFDQ-PLPGLL------------ALWVAEDSDTQASIQWLRRTFAERLWLAVHLH 158

Query: 190  RGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             G D  +R  Q + LA +  +P VA  +    +       D + A+ H   V++    R+
Sbjct: 159  CGQDDAHRLEQRLNLAASLRIPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAG-TRL 217

Query: 249  TP--DHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             P  + +L++   + +++   P AL + T  IARRC+F L       PR +  E  D   
Sbjct: 218  HPNGERHLRSLDALAALY---PHALLDETQAIARRCTFDLSQLRYHYPRELVPEGHDA-- 272

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E+ LR    AG+  R  QG  A         Q++  EL +I+ + +  YFL V D ++
Sbjct: 273  --ESWLRAVTEAGIAQRWPQGVDAHTL------QQIHKELALISELGYESYFLTVHDIVR 324

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S   +AL IT+IDP   S+LFERFL+ +R   PD D+DF  +
Sbjct: 325  FARSRSI-LCQGRGSAANSAVCFALGITEIDPSLTSMLFERFLSKERNEPPDIDVDFEHE 383

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL--CKLIPNDP 483
            RR+EV++YV  +YG  R A      S  A  A+RDV +AL +P  QV+ L  C    +D 
Sbjct: 384  RREEVLQYVFQRYGRTRAALTAVVSSYHAAGAVRDVAKALGLPPDQVNALADCCGRWSDD 443

Query: 484  AHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            A P+         R RE       P + R+L ++Q+L G  RH S H  G VI + PL  
Sbjct: 444  APPL--------ERLREGGFDPQSPILRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDT 495

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            LVP+     ++  + Q++   ++  GL+K D L L  L+ +++  D L + R     L+ 
Sbjct: 496  LVPVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNRDFSLAS 555

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V
Sbjct: 556  LPKEDPATYAMISKADTIGVFQIESRAQMSMLPRLRPQTFYDLVIEVAIVRPGPIQGGMV 615

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R+N +E+     P ++ +L+ T G+ ++QEQVMQIA + + Y   EAD LRR+M 
Sbjct: 616  HPYLRRRNKEEETTYPSPELEVVLQRTLGIPLFQEQVMQIAMVAADYGPGEADQLRRSMA 675

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K    ++  +ER  +G  KNG S+  A  IFE +  F  YGF +SHAA++A+++Y + 
Sbjct: 676  AWKRHGGLEPHQERLRTGMLKNGYSEEFAAQIFEQIKGFGSYGFPESHAASFALLTYASC 735

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GD 832
            W+K H P  F  A +           +  QDAR+  +QI P  V     D  +       
Sbjct: 736  WLKCHEPAAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASDWDCSLEPIDGAQ 795

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              I   L  I G+     R I  A     F  + D  +R     L+ R    L  AGAL 
Sbjct: 796  PAIRMGLRMIAGLREEEGRRIETARERGVFSDIADLDARAG---LDARTQALLADAGALR 852

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                         DN  K A+W E    +K   +FA   G  S    +            
Sbjct: 853  ALA----------DNRHK-ARW-EVAGVHKQLGLFA---GLPSPDEAVVALPAPTVGEDL 897

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + +   +G     HPL + +  LRK   +  +E +    G N+ +A +V  +Q+  T  G
Sbjct: 898  QADYATVGTTLGPHPLALLRTELRKRRCRSSQELMLVEHGRNVSIAGLVTGRQRPGTASG 957

Query: 1013 SRIGWVTF 1020
                 VTF
Sbjct: 958  -----VTF 960


>gi|88856604|ref|ZP_01131261.1| DNA polymerase III subunit alpha [marine actinobacterium PHSC20C1]
 gi|88814258|gb|EAR24123.1| DNA polymerase III subunit alpha [marine actinobacterium PHSC20C1]
          Length = 1148

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 304/1063 (28%), Positives = 481/1063 (45%), Gaps = 114/1063 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HSS+S L+GA     + ++ A     A+A+TD + L+  +  ++ A   G+  +
Sbjct: 68   YAELHAHSSFSFLDGASMPEKMAEEAARLGLSALALTDHDGLYGIVRMAEAAAELGLPTL 127

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L + +        Q     P    +++L    EGY RL   ++R  L    K    
Sbjct: 128  FGAELSLGL-----TGPQAGNADPEGDHLLVLARKEEGYHRLALAITRAQLRGGEKGRPH 182

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAF---FFNSSQVAEKRLLT------FKKLFG-D 180
              L+ L E+      +LTG   G + RA      NS+  +E  L          +LFG +
Sbjct: 183  YELNELAELAGGHWFVLTGCRKGRVRRALNGSLPNSAPTSETMLAAGHELDRLSELFGSE 242

Query: 181  RLYVNLQRHRGY--DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             + V L  H GY  D      +  LA    L +VAT+N+ + +   +  H  + AV    
Sbjct: 243  AVIVELFDH-GYPLDSAYNDALYSLAEERGLRVVATSNAHYATPRQHHLHSAISAVRARR 301

Query: 239  VVSQKDR--PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
             + + D   P     H L++ +EM + F+  P A+  TVEIA   +F L+   P LP   
Sbjct: 302  SLDEMDGWLPAAGTAH-LRSGAEMATRFARYPGAVATTVEIAHEAAFELRQAKPALPDQD 360

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E         + LR    AG++ R  +        ++  R R+  EL+VI    F+GY
Sbjct: 361  VPEG----HTPASWLRELTWAGVKDRSIE-------LSEQNRARIQRELDVIEEKHFAGY 409

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV D + +A+   I +  GRGS A SV  Y L IT +DPLR+ L FERF++  R   P
Sbjct: 410  FLIVHDIVSFARGRGI-LCQGRGSAASSVVCYLLKITAVDPLRYKLPFERFISAMREEEP 468

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  +RR+EVI+YV  +YG E  AQ+      + + A+RD+ +AL     Q D   
Sbjct: 469  DIDVDFDSERREEVIQYVFERYGRENAAQVANVIQYRPRFAVRDMAKALGYSSGQQDAWS 528

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSV-DRLLEISQKLEGLYRHASTHAAGIVIG 535
            K +               +    E    D  + D ++E++Q++    RH   H+ G+V+ 
Sbjct: 529  KQM---------------ERWGSEVSGVDHDIPDAVVELAQQVMKFPRHLGIHSGGMVLT 573

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
             RP+ ++VP+    +    V Q++       GL+KFD LGL  L+ +Q S D + +  G 
Sbjct: 574  QRPVGEVVPIEHARKEKRTVVQWDKDDCAWMGLVKFDLLGLGILSAMQYSFDLVDEALGE 633

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            + DL+ IP ++   Y  L     +G+FQ+ES      L  +QP     ++  ++L RPGP
Sbjct: 634  RWDLATIPAEEQGVYDQLCRADAVGVFQVESRAQMGLLPRLQPREFYHLVVEIALVRPGP 693

Query: 655  IDNIVV--YNNRKNGKEKIVSIHP-LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            I    V  Y  RK G + I  +HP L++P L+ T GV I+QEQ+MQIA  + G S  +AD
Sbjct: 694  IQGGAVHPYVRRKMGADPITYLHPNLVEP-LERTLGVPIFQEQLMQIAVAVGGCSADDAD 752

Query: 712  VLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAMG K+  E +DK + +  +G + NGI    A  I+E +  FA +GF +SHA ++ 
Sbjct: 753  LLRRAMGSKRGIERIDKLRSKLYAGMASNGIVGADADRIYESIQAFAGFGFAESHALSFG 812

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV--------- 821
            ++ Y +AW++ HYP  FLAA +  +       +    DAR+  +Q+  P +         
Sbjct: 813  LLVYASAWIRLHYPAAFLAALLRAQPMGFYSPQSLVADARRHGVQVRGPDIQRSGVFAVL 872

Query: 822  ------------NTPCVD--------------FKVGDNR------IYYSLAAIKGVGTTT 849
                        +  C+D              F   D+R      +   L  +KG+G   
Sbjct: 873  EQLVDGATAPTGDARCLDHEQPPIGPFDRTAHFDTDDHRRDGAFSVRLGLDEVKGIGAAV 932

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+       F S+ D   RV    L  + LE+L  AGA +  G +R + L       
Sbjct: 933  AEKIVAERESGEFASMNDVVRRV---GLTTKQLEALAAAGAFEVLGLTRREAL------- 982

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                W   N ++  E    +        +    FS+     +   +    G     HP+ 
Sbjct: 983  ----WNAGNASHDREEYLPNSMVVVQPPL----FSLATEFDQLMADLWATGISPQSHPVA 1034

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +  L + G+    +      G  I +  +V  +Q+  T  G
Sbjct: 1035 HVREALTQRGVLAAADLTVAESGRRIEIGGVVTHRQRPATASG 1077


>gi|13508117|ref|NP_110066.1| DNA polymerase III alpha subunit [Mycoplasma pneumoniae M129]
 gi|2494194|sp|P75404|DPO3A_MYCPN RecName: Full=DNA polymerase III subunit alpha
 gi|1674148|gb|AAB96107.1| DNA polymerase III alpha subunit [Mycoplasma pneumoniae M129]
          Length = 872

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/571 (38%), Positives = 314/571 (54%), Gaps = 13/571 (2%)

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
           Q Y +RL  EL +I  + F+ YFL+V+D +Q+A  N+I +GPGRGS  GS+ A+ L IT 
Sbjct: 271 QLYEERLAKELEIINSLHFASYFLVVSDLVQFAHNNDILIGPGRGSAVGSLVAFLLKITQ 330

Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           IDP+  +L+FERF++  R  +PD DID  + +RD VI YV  KYG E+ AQI+TF   + 
Sbjct: 331 IDPVANNLIFERFISRHRQGLPDIDIDIMETKRDLVIDYVMQKYGREQCAQIVTFQKFKT 390

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
           ++ALRDVG+         D L KL  +     + +  + D       +L+  S   L E+
Sbjct: 391 RSALRDVGKVFNHIEGAEDLLGKLPKDKSLLELDVNGVTDPV----LQLSLKSFRLLWEV 446

Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
           ++++    R  S HA+G+VI   PL   +P+     ++  VTQ +M W+E   L KFD L
Sbjct: 447 AREIINFPRQPSIHASGVVIVTEPLITTIPLMVGNNNNY-VTQVSMDWLEWYNLNKFDLL 505

Query: 575 GLKTLTLLQKSLDFLAQRGVKVD--LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
           GL  LT++ + +  +  + V V   L  IP DD  T+  LT + TLG+FQLES GM++ L
Sbjct: 506 GLINLTMIHEVVQAVKPKEVSVQQFLQQIPLDDEATFTNLTNQATLGVFQLESFGMKKVL 565

Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           + ++P  + D+  +++LYRPGP DNI  +   +N       I P I P+LKET GV+I+Q
Sbjct: 566 KQIKPHNLHDLAIVLALYRPGPQDNINTFIANRNLGFDTSDIDPRILPILKETYGVLIFQ 625

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQV+ IA+ ++ YSL  AD  RRA+ KK  + +      F  GA  N  S   A  IF  
Sbjct: 626 EQVINIAKTVANYSLETADSFRRAISKKNLQVIQDNMRSFYEGALANNFSLKAATTIFNY 685

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           + +FA YGFN SHA  YA++SY TAW+KTHY  +F    +  E    EK K+   +    
Sbjct: 686 IQRFAGYGFNLSHALGYALLSYWTAWLKTHYFEQFNLWWLNHEQGKKEKQKQLLNEFISS 745

Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR---HIMEASADKPFDSLEDFC 869
             +I PP +N    DF V D ++Y     I G+G   A    H+ E     P  SL    
Sbjct: 746 GYEICPPLINKAKSDFSVQDKKLYLGFKLINGIGDKQAHALEHVQEVLKQNPNLSLIATV 805

Query: 870 SRVDSKKLNRRVLESLVF---AGALDCFGYS 897
           +   SK +    L+ +     AG  +CF Y+
Sbjct: 806 NLCLSKTVGGLELKDITLLQQAGCFNCFNYT 836



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 16/106 (15%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV+L  +S Y+ L   LS   ++D    DQQ A+ +TD  NLF A EF      A I+P+
Sbjct: 2   FVNLHTNSYYNFLNSTLSPQKLVDLAVQDQQVAVCLTDP-NLFGATEFFLACQKAHIKPL 60

Query: 71  IGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
           IG  + +   + N+              +++++  T  GYQ L+ L
Sbjct: 61  IGLSVTVRHYEQNV--------------NLLVIAQTNRGYQNLMCL 92


>gi|288957250|ref|YP_003447591.1| DNA polymerase III subunit alpha [Azospirillum sp. B510]
 gi|288909558|dbj|BAI71047.1| DNA polymerase III subunit alpha [Azospirillum sp. B510]
          Length = 1043

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 306/1021 (29%), Positives = 471/1021 (46%), Gaps = 88/1021 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV +S+S LEGA   + +    AA    A+ +TD N+L   ++    A   GI+P+
Sbjct: 4    YAELQVATSFSFLEGASQPDELALTAAALGLAAVGVTDRNSLAGVVQMHVAARKLGIRPL 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC+LD+           G   +PT             Y RL    SR+  L + +    
Sbjct: 64   IGCRLDL-------TDAGGLLAYPT---------DRAAYARL----SRLLTLGKRRAPKG 103

Query: 131  ICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             C     ++    EG++ L      P  R   F     A +  L   +LF         R
Sbjct: 104  ECFIARADVLAHAEGMLFLL---LSPDRRDESFLRELRAWRGGLARGQLF----LAASHR 156

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
            ++G D  R   +  LA    +PLVATN+ L+         DV+  + H T + +   R  
Sbjct: 157  YQGDDSRRLRWLAGLAEAEGVPLVATNDVLYHGAGRRALADVMTCIRHHTSIDEAGWRLC 216

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + +LK   EM  +F D PEA+  T EIA  C F L               D+++ E 
Sbjct: 217  ANAERHLKPAVEMARLFRDHPEAVARTAEIADACRFSL---------------DELRYEY 261

Query: 308  ENEL-RNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +E+   +      V L     AK Y A      RQ ++ EL +IA  +++ YFL V D 
Sbjct: 262  PDEVAEGRDPQETLVTLTWEGAAKRYPAGIPDPVRQTVERELALIADRRYAPYFLTVHDI 321

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +A+K +I +  GRGS A S   Y L IT +DP    LLFERF++  R   PD D+DF 
Sbjct: 322  VNFARKQDI-LCQGRGSAANSAVCYCLGITSVDPTEVDLLFERFISAARDEPPDIDVDFE 380

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EVI+Y+  KYG +R     T    +A++ALR+VG+A+ +    V RL   I    
Sbjct: 381  HERREEVIQYIYRKYGRDRAGLTATVIRYRARSALREVGKAMGLSADLVARLTGSIWG-- 438

Query: 484  AHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                S Q + D+ R R   L   DP + R LE++Q+L G  RH S H  G VI   PLS 
Sbjct: 439  ---WSGQGV-DEERARSLGLDPDDPRLRRTLELAQELTGFPRHLSQHVGGFVITRGPLSD 494

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            L P+      D    +++   I+  G++K D L L  LT + ++ D + +  G +  L+ 
Sbjct: 495  LCPVANAAMEDRTTIEWDKDDIDALGILKVDVLALGMLTCIHRTFDMIERLHGTRWTLAT 554

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D   Y +L    +LG+FQ+ES      L  ++P C  D++  V++ RPGPI   +V
Sbjct: 555  IPQNDPAVYGMLGRADSLGVFQVESRAQMSMLPRLKPTCFYDLVIEVAIVRPGPIQGGMV 614

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R++G E +    P ++P+L  T GV ++QEQ M++A + +G+S  EAD LRRAM 
Sbjct: 615  HPYLRRRSGAEPVTYPMPRLEPVLHRTLGVPLFQEQAMKVAMVGAGFSGEEADQLRRAMA 674

Query: 719  KKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
               K  ++ +  ++FI+G + NG     A   F+ +  F +YGF +SHAA++A++ Y +A
Sbjct: 675  AFRKTGQVRRFHDKFIAGMTANGCDAAFAERCFQQIEGFGEYGFPESHAASFALLVYVSA 734

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--- 834
            W+K H+P  F AA +  +        +  +DAR+  + ++PP VN    D  V       
Sbjct: 735  WIKRHHPAIFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPPDVNLSGWDCAVEAGETGL 794

Query: 835  -IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +   L  I+GV    A  I+ + A    D   D   R    +L    LE L  A A   
Sbjct: 795  TLRLGLRLIRGVTEDHADAIVLSRAGGYRDPY-DLWRRA---RLPVATLEKLARADAFRS 850

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVENSSVR 951
             G  R           + A W  +   +    +FA   G  + +    L   ++    V 
Sbjct: 851  VGLDR-----------RAALWAVRALGDAPLPLFARLDGPMAGEPDAPLPAMALGEHVV- 898

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +   L      HPL + +  L   G+   E    T  G  +  A +V+ +Q+  +  
Sbjct: 899  --MDYGSLSLSLKAHPLALLRDGL--PGVTPAERLARTRDGRRLTTAGLVLVRQRPGSAA 954

Query: 1012 G 1012
            G
Sbjct: 955  G 955


>gi|226525297|gb|ACO70896.1| DNA polymerase III alpha subunit [uncultured Verrucomicrobia
           bacterium]
          Length = 1022

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 277/920 (30%), Positives = 454/920 (49%), Gaps = 80/920 (8%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           ++V L   S++S L G      + ++ A  + PA+A+ D + ++ A  F  K    G++ 
Sbjct: 2   AYVELHARSAFSFLRGGSFPERLAERAAELKMPAMALCDRDGVYGAPRFFGKGREHGVRS 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I+GC+L   M+D   +               +LV +  GYQ L  L+++  L    ++S 
Sbjct: 62  IVGCELT--MEDGFILP--------------VLVESRTGYQNLCRLLTQAKLRGTKERSP 105

Query: 130 RICLSW--LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              ++W  L E    GL+ L G  +G ++       +    K L  F K   + ++V +Q
Sbjct: 106 ---VNWNDLAEYAN-GLVALFGMENGKLE-------AGPVPKLLAAFGK---ENVFVEIQ 151

Query: 188 RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           RH  RG  R R   ++ LA  H LPL+ATN  L+      E  DV   + H T +    R
Sbjct: 152 RHLTRGEQR-RNQALIDLARHHRLPLLATNGVLYAEPRQREVLDVFTCLRHHTQLDLAGR 210

Query: 246 P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                 + +LK+ +EM ++F DLPEA++NT  +A R  F L+      P F         
Sbjct: 211 LLEQNAERHLKSGAEMSALFRDLPEAIDNTERLAERLEFTLENLGYQFPTFPTSG----- 265

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ---RLDFELNVIARMKFSGYFLIVA 361
                   ++ + G+  RL      + Y A+  R+   +++ EL +I R+ F+GYFLIV 
Sbjct: 266 --------DETMEGMLRRLTYEGARRRYSARLPRKVVRQIERELELICRLGFAGYFLIVW 317

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR--MSMPDFD 419
           D +++ ++N+I V  GRGS A SV  Y L IT  DP+++ LLFERFL+  R   S PD D
Sbjct: 318 DLVKFCEENDIMV-QGRGSAANSVVCYCLRITLCDPIKYKLLFERFLSEGRNPRSWPDID 376

Query: 420 IDF-CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           +D    DRR+ VI+ V  +YG    A      S + ++A R++G+ L      +DR   L
Sbjct: 377 LDLPSGDRRERVIQEVYRRYGERGAAMTANVISYRGRSAAREIGKVLNFSNDVLDRFSNL 436

Query: 479 IPN-DPAHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             N D  H +  Q      +  +A +A   P +   + +++ + GL RH   H+ G+VI 
Sbjct: 437 FANGDFPHTLGFQ-----EQVIKAGIAPEHPRLPAFMRLNEAMRGLPRHLGQHSGGMVIC 491

Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            + L ++VP+ R       V Q++    E  G++K D LGL  L  +Q++L   ++RG +
Sbjct: 492 QQSLDRVVPLERASMPGRVVVQWDKDDCEDLGIVKIDLLGLGMLAAIQETLTLCSERGRE 551

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
           V    +P DD  TY ++    T+G+FQ+ES      L  M+P C  D++  V++ RPGPI
Sbjct: 552 VQFHKLPQDDPATYEMIRKADTIGVFQIESRAQMATLPRMKPTCFYDLVIEVAIIRPGPI 611

Query: 656 DNIVV--YNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
              ++  Y  R+ GK  E       L+ P+L+ T GV ++QEQ++ +A  L+ +S SEA+
Sbjct: 612 QGGLMHPYLARREGKEPETYFGYDELLKPVLERTLGVPLFQEQMLGMAMALADFSGSEAE 671

Query: 712 VLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            LRRA+   +  E M+K + +  +   +  I       I   ++ FA YGF +SHA ++A
Sbjct: 672 ELRRALSFHRSHERMEKVQVKLRAALERKEIRPEAIEQIVNAVSSFALYGFPESHAISFA 731

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT---PCVD 827
            ++Y ++W+K H   EF AA +  +           +DA++  ++  P  V     PCV 
Sbjct: 732 YLAYGSSWLKVHRAPEFYAALLNNQPMGFYAPATLIKDAQRRGVKFRPVCVQASQWPCV- 790

Query: 828 FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               D  I   L  +KG+    A  ++   A +P++ L D  SRV   +L +    +L  
Sbjct: 791 -IEADGAIRLGLCMVKGLQRERAERLI---AGRPYEVLGDVQSRV---RLTKEEWRTLAE 843

Query: 888 AGALDCFGYSRMQLLQSLDN 907
            GA    G  R + L ++++
Sbjct: 844 IGAFAVLGKHRREALWTVED 863


>gi|256832419|ref|YP_003161146.1| DNA polymerase III, alpha subunit [Jonesia denitrificans DSM 20603]
 gi|256685950|gb|ACV08843.1| DNA polymerase III, alpha subunit [Jonesia denitrificans DSM 20603]
          Length = 1093

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 258/847 (30%), Positives = 413/847 (48%), Gaps = 48/847 (5%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            SP +  L  HS+YS L+GA S    + +       A+A+T+ N L+SA++ +  A   G
Sbjct: 2   SSPRYAELHAHSTYSFLDGASSPAEFVAEAERLGLSALALTEHNGLYSAVQVATAAKDTG 61

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ + G ++ +   D  +     + P      +V+L     GY+ L   +S  +L    K
Sbjct: 62  VRTVFGAEVSVTPADAPEPVAGHRDP--QADHLVVLARDPRGYRALSHALSLAHLAGGAK 119

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV-- 184
                  + L + G +  ++L G    PI RA        A +      + FG +  V  
Sbjct: 120 GRTHHTYTSLADQGDDQWVILAGCRKSPILRALQRQGHDAALEVAHDLAQRFGRQNLVID 179

Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            ++R   YD      V ++A   ++ L+A+ N+ +    D+   +VL A+     ++  D
Sbjct: 180 WVRRGTAYDDALGDAVERVAQEAKIALIASTNAHYAHPRDHRRAEVLSALGAGRTLADND 239

Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R+ +P  +L++  +MV + +  P +++    +A   +F   V AP LP +      D 
Sbjct: 240 PWRLASPTAHLRSARDMVRLHARRPHSVDAAARLADELAFDFDVVAPRLPPYPVPAGHDE 299

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                +   NKA      R   G     + A    Q +D EL++I  + F+GYFLIV D 
Sbjct: 300 STWLRHLTDNKA------RRVYGTRDTNHAAW---QHIDHELSIITSLGFAGYFLIVHDI 350

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           +++   +NI +  GRGS A S   YAL IT +D +R  LLFERFL P+R   PD DID  
Sbjct: 351 MEFCSTHNI-LAQGRGSAANSAVCYALGITAVDAVRHGLLFERFLAPERDGPPDIDIDIE 409

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI---- 479
             RR+EVI++V  +YG    AQ+ T  + + + A+RD  R L  P  QV+   K I    
Sbjct: 410 SGRREEVIQHVYTRYGRHHAAQVATVITYRPRLAVRDAARVLGYPIGQVNAWSKTIDRSF 469

Query: 480 --------------PNDPAHPVSLQAIADDSRFREARLAD--PSVDRLLEISQKLEGLYR 523
                          +D   P +      D R      AD  P+V    + +  L  L R
Sbjct: 470 RPDTPPGTPTTPDHTSDLPAPTTQPPTPHDGR------ADLPPAVR---DTASLLHNLPR 520

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
           H   H+ G+V+ DRP++ + P+         V Q++ +    AGL+KFD LGL  LT L+
Sbjct: 521 HLGIHSGGMVLCDRPVTHVCPVEWGTTPGRTVLQWDKEDCADAGLVKFDLLGLGMLTALR 580

Query: 584 KSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            + D + A     + L  +P +D   Y LL    T+G+FQ+ES      L  ++P C  D
Sbjct: 581 IAFDHVAATTNTALGLYTLPPEDPGVYELLQAADTVGVFQVESRAQISTLPRLKPTCFYD 640

Query: 643 IIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
           I+  V+L RPGPI    V  Y  R+ G+E +   HPL+ P L++T G+ ++QEQ+MQIA 
Sbjct: 641 IVIEVALIRPGPIQGGSVHPYLRRRQGREPVTYPHPLLKPALEKTLGIPLFQEQLMQIAI 700

Query: 701 LLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
             +G++ +E+D LRRAMG K+    M+  + R + G ++ GI    +  I+E L  FAD+
Sbjct: 701 DAAGFTPAESDQLRRAMGSKRSTARMEALRTRLLDGMAQRGIPPHASTEIYERLKAFADF 760

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           GF +SHA ++A I Y +A++K H+P  F +A +  +       +    DAR+  + I  P
Sbjct: 761 GFPESHAFSFAHIVYASAYLKRHHPAAFYSALLAAQPMGFYSPQSLMNDARRHGLTIHRP 820

Query: 820 SVNTPCV 826
            + T  +
Sbjct: 821 CIATSTI 827


>gi|284931595|gb|ADC31533.1| DNA polymerase III alpha subunit [Mycoplasma gallisepticum str. F]
          Length = 1023

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/577 (36%), Positives = 333/577 (57%), Gaps = 24/577 (4%)

Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
           ++RL++EL +I ++ FS YFL V DFI  AK+  I +GPGRGS AGS  +Y L IT I+P
Sbjct: 257 QKRLNYELAIIKKLNFSDYFLFVYDFINHAKQQGIVIGPGRGSAAGSFISYLLNITTINP 316

Query: 398 LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
           + + L+FERFLNP R SMPD D+D    RR+EV+ Y+ NKY  + VA IITF  ++ K A
Sbjct: 317 ISYGLIFERFLNPQRKSMPDIDVDIMDSRREEVVDYLFNKYSKDNVAHIITFQRIKVKNA 376

Query: 458 LRDVGRALQMPYSQVDRLCKLIPNDP-------AHPVSLQAIADDSRF--------REAR 502
           +RDV R L +  S+ D +   +  D         +  +L+ + + +          R   
Sbjct: 377 IRDVCRVLDLKTSETDEVINFVSYDEISDWEKNQNATALKKVLNCNECDLDQKKCKRSGA 436

Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM-YRDVRSDLPVTQFNMK 561
           ++   + ++ +++Q +  + R    HAAG+V G+  L+Q +P+ Y + RS   V+QF+M+
Sbjct: 437 VSCYVISKIFDLAQTIFNVPRQTGLHAAGVVCGNDALTQTIPLQYLNNRS---VSQFSME 493

Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IPFDDHETYHLLTTKGTLG 619
           ++E+ GL+K D LGLKTLT++ + ++ L +     D  +  IP ++  T++LL    T G
Sbjct: 494 YLEQFGLMKIDLLGLKTLTIIDE-INSLVKLNYDRDFDINNIPLNNKNTFNLLKKGYTKG 552

Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
           +FQLES GM+  L+ + P+ IEDI  + +LYRPGP DNI  Y  R+    +   +   + 
Sbjct: 553 VFQLESLGMQNVLKKVLPESIEDISIISALYRPGPQDNIDEYVKRRFSNTEFNYLSEDLI 612

Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
            +LK T G+IIYQEQV+  A +++ +  ++AD  RRA+ KK +  + K K+ FI  A KN
Sbjct: 613 EILKPTHGIIIYQEQVINTAMVVANFDAAQADSFRRAISKKDEALLLKDKKAFIEQAIKN 672

Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
             S+  A+ IFE L KFADYGFN SH+ +YA ++YQ A++K +YP EF    +   +D+ 
Sbjct: 673 RYSEQKALEIFEYLHKFADYGFNHSHSLSYAFLAYQMAYLKANYPKEFYLILLKNNVDSK 732

Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--RIYYSLAAIKGVGTTTARHIMEAS 857
            K+  +  +  + NI I+ P++N     F +  +  +I      I G+G   A  I++A 
Sbjct: 733 VKLTDYFIEIIERNIGIIKPNINLSDWSFSLSADHQKIILGFNMINGLGNENANKIVQAR 792

Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +K F+   D    +    + + + + LV  G  D F
Sbjct: 793 NNKQFEGFIDCLINLAKNGITKSLFDKLVNVGVFDQF 829



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 15/107 (14%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV+L   S YSLL   LS++ I+D    + Q  + +TD N L+ A+EF   A    + PI
Sbjct: 2   FVNLNTRSYYSLLSTNLSISEIIDFAVKNNQTHVCLTDLNVLYGAVEFYNLAKKNHLIPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
           IG ++                   T   +VL+     GY  LI++ S
Sbjct: 62  IGLEI---------------FDHSTNSELVLIAKNNSGYLNLIKISS 93


>gi|227549925|ref|ZP_03979974.1| error-prone DNA polymerase [Corynebacterium lipophiloflavum DSM
            44291]
 gi|227078021|gb|EEI15984.1| error-prone DNA polymerase [Corynebacterium lipophiloflavum DSM
            44291]
          Length = 1042

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 302/1035 (29%), Positives = 468/1035 (45%), Gaps = 117/1035 (11%)

Query: 2    TQYLEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            T Y E S + F  L   SSYS L+GA     ++ +       A+A+ D +  + A++F++
Sbjct: 40   TNYPEASHAPFAELHAVSSYSFLDGASEPEEMVRRARDLGITALALLDRDGFYGAVKFAE 99

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AGI  + G +L +           G    P      +L    EGY+ L  L++   
Sbjct: 100  AAAEAGIDTVFGAELTL-----------GDRVLP------VLAKGPEGYRHLSHLIAAAR 142

Query: 121  LLDQGKQSVRICLSWL--QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
            ++ + K +V      L   E+    +++        ID         V  +  ++     
Sbjct: 143  MITREKDAVSYPPLELIAHELAGTCIVLAGWQWVDDIDHLVELFGGNVVREYEVSMTPED 202

Query: 179  GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH--DVLM-AVA 235
             D        HR  D Y     +  A    +P  AT +   L+         D L  A A
Sbjct: 203  ADH-------HRALDDYPHVPAIVSA----MPAAATRDDARLAAAKRALARRDCLNDAHA 251

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
            H   +           ++L++  ++ ++     + +   + IA +C+F L + AP LPR+
Sbjct: 252  HLHPMGA---------NWLRSAEQIEAMLPGAQDKIATALAIAAQCAFTLNLVAPELPRY 302

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                  D    E + LR+  +AG ++R A         A     ++D+EL VI  + F G
Sbjct: 303  PTPTGFD----EMSWLRHITLAGAQLRYATRPDETRAKAM---SQIDYELGVIEELNFPG 355

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV D + +A++ NI +  GRGS A S   +AL IT+ +P+   LLFERFL+PDR   
Sbjct: 356  YFLIVHDLVDFARRENI-LCQGRGSAANSAVCFALGITNAEPISAGLLFERFLSPDRDGP 414

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD DID    RR+EVI+Y   +YG +  AQ+    + + K A+RD  RAL       D  
Sbjct: 415  PDIDIDIESGRREEVIQYAYERYGRDNAAQVANVITYRTKGAIRDAARALGYAQGAADSW 474

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             K I   P                         + + +++ +L+G  RH   H+ G+VI 
Sbjct: 475  SKGISRPP-------------------------EGVEKLASQLKGQPRHLGIHSGGMVIC 509

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
            DRP++ +VP+      +  V Q++      AGL+KFD LGL  L  L   +D +    G 
Sbjct: 510  DRPIADVVPVEWARMENRSVVQWDKDDCASAGLVKFDLLGLGMLEALHHMIDLVRDTAGR 569

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +V+L  +   D   Y +L     +G+FQ+ES      L  ++P C  D++  V+L RPGP
Sbjct: 570  EVNLWELDVADARVYEMLCRADAVGVFQVESRAQLSTLPRLKPRCFFDLVVEVALIRPGP 629

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            I    V  Y  R++GKE IV  HP+++  L +T G+ ++QEQ+MQIA   +G+S  EAD 
Sbjct: 630  IQGGSVHPYLRRRDGKEAIVYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFSGREADA 689

Query: 713  LRRAMG-KKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            LRRAMG K+  E+M + KERF  G  + N I   +A  ++  +  FA YGF +SH+ ++A
Sbjct: 690  LRRAMGSKRSPEKMAQLKERFFDGCWATNRIDHDVAETLWAKIVAFAAYGFPESHSQSFA 749

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP-----C 825
             + + +AW K +YP +F    +  +       +   QDAR+  I+++P SVN       C
Sbjct: 750  SLVFFSAWFKCYYPAQFCVGLLRAQPMGFYSPQSLIQDARRHGIEVLPVSVNDSGREAIC 809

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            VD    +  I   L  IKG+G   A  I    A +PF  + D   R D   L+   +E+L
Sbjct: 810  VD----NATIRVGLNLIKGLGDKAADRI---EAAQPFRDIPDLSRRAD---LSVEHVEAL 859

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGALDCFG  R Q L         A      R      + A E          E    
Sbjct: 860  ARAGALDCFGVDRRQALWQ-------AGVAATEREGMLPGLSAIEAPALPGMNAFELMVA 912

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
            +  +          G      P+++ +  LR  G+           G  +R+A +V  +Q
Sbjct: 913  DIGAT---------GVTHDKQPMELLRERLRADGLVTAAGLKQVEDGTRVRVAGVVTHRQ 963

Query: 1006 QKKTRKGSRIGWVTF 1020
            + +T  G     VTF
Sbjct: 964  RPRTASG-----VTF 973


>gi|297626724|ref|YP_003688487.1| DNA polymerase III alpha subunit [Propionibacterium freudenreichii
            subsp. shermanii CIRM-BIA1]
 gi|296922489|emb|CBL57062.1| DNA polymerase III alpha subunit [Propionibacterium freudenreichii
            subsp. shermanii CIRM-BIA1]
          Length = 1181

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 305/1097 (27%), Positives = 512/1097 (46%), Gaps = 112/1097 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+FVHL+V SSYSL  GA     ++   AA     + +TD + L+ A+ F Q    A I 
Sbjct: 2    PAFVHLRVASSYSLQYGASHPEELVAGAAAAGMTMLGLTDRDGLYGAVRFVQACQQANIS 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPT---------VPSIVLLVSTAEGYQRLIELVSRM 119
            PI+G  L +++        + + P P          +P +V+L  +  G+  L  LV+  
Sbjct: 62   PIVGVDLAVELCGVPDGARRVR-PVPVKGGSLRDEGLPRVVVLARSKAGWAALCRLVTGA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +      + V     + Q  G  GL +L G  S  + RA   +    A++ L  ++++  
Sbjct: 121  HQAPDRARPVATGQLFGQWAGDGGLSVLLGPDSS-LGRALANHDDHGADRELARWRQVVP 179

Query: 180  D-RLYVNLQRHRGYDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            D R+ + +  H G D      +   +V+ A  H L  V TN       +     DVL A 
Sbjct: 180  DNRIALAVSDHLGRDGEASLPQAVAMVRFADRHRLECVLTNQVRMARADQAPVCDVLDAA 239

Query: 235  AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA----------LENTVEIARRCSF- 283
                 ++       T + +LK   +M ++ + + +           L +T  +A  C   
Sbjct: 240  RLLQPLTMGRLGLGTGEGWLKPSGQMAAVAARISDGAGRDDRGRRLLADTRVLAEECVLD 299

Query: 284  ------ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
                  + ++H P +P            +    LR + +AGL  R       +G +    
Sbjct: 300  PKRDIGLGEIHLPGVP------------DANRRLRERCLAGLPRRY------RG-NTTMV 340

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             QRLD EL VI     + YFL VA  +   +   +     RGSGAGS+  + L I+ +DP
Sbjct: 341  EQRLDAELGVIEGCNMASYFLTVAGVVDMVRGAGLRC-TARGSGAGSLVNHLLGISGVDP 399

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
            +R+ LL ERFL+ +R  +PD D+D    RR ++ R V +++G ++VA +    + +A+ A
Sbjct: 400  MRYGLLMERFLSAERDKLPDIDLDVESARRTDIYRMVLDRFGADQVACVAMVETYRARHA 459

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
            LRDVG AL +P  ++D + K  P+  A  V   A+A+    R A + +     +L++ + 
Sbjct: 460  LRDVGAALSVPPGEIDAMAKAFPHIRADQVR-NALAELPELRSAGINEERFGVVLDLVEG 518

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            L+GL RH + H  G++I D+ L    P+     SD P++Q++   +E+ GL+K D LG++
Sbjct: 519  LDGLPRHLALHPCGVIISDKTLYDRSPVQTSA-SDFPMSQYDKDDVEEMGLLKLDVLGVR 577

Query: 578  TLTLLQKSLDFLAQRGVKVDL----SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
              + +  +LD +       ++     L PFDD E Y L+    TLG FQ+ES G R+ + 
Sbjct: 578  MQSAIAHALDEIRHTEGPEEVPDLEELEPFDDPEVYELIDHSQTLGCFQIESPGQRELVG 637

Query: 634  GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
               P C  DII  +SL+RPGP+  D +  + + + G      +   + P+L ET GVI++
Sbjct: 638  KFAPTCFNDIIIDISLFRPGPVKADMVSPFLDARAGWVSPSYLDERLRPILAETYGVIVF 697

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
             EQV++I   ++G  L  AD +RRA+G    +     +E F   A  NG  +  A  I+ 
Sbjct: 698  HEQVIRIIAEVTGKGLGRADEMRRALGSMSAKP--AVQEWFFKYARLNGYDQGQATRIWA 755

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             L  FA +GF K+HAA+++V +YQ+AW+K H+P +FLA  +T +     K +   ++AR+
Sbjct: 756  ALESFASFGFCKAHAASFSVPTYQSAWLKRHWPAQFLAGILTHDPGMYPK-RLLLEEARR 814

Query: 812  FNIQIMPPSVNT----------------PCVDFKVGDNR---IYYSLAAIKGVGTTTARH 852
             +I ++   VN+                P     + D R   I  SLA + G+   T   
Sbjct: 815  MSISVLGIDVNSCSGSFHAEPVEADPQMPAPPAGLPDARDWGIRLSLADVAGI---TDDM 871

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC-FG-----------YSRMQ 900
            I    A +P+D L DF +R     ++  V E+L+  G LD  +G            +R  
Sbjct: 872  IGSIVAGQPYDDLSDFFAR---SHVSAPVAENLIMVGGLDSLYGIDPDRPSGAGRVTRRD 928

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTF----SDKITLEKFSVENSSVRFENE 955
            LL +L ++      V   R  +  +  A   +GTF    +  +        + + R + E
Sbjct: 929  LLLTLGDL------VRDARAGRRAHGAATSLQGTFDFAAAGDVEPSGLPEMSRAERTQAE 982

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
              VLG   S H ++ Y+ +L+ +G     + +       + +A + V+ Q    R G R+
Sbjct: 983  LAVLGMDVSRHIVEFYQEMLQGLGWVPAAQLLDHRNHEEVLVAGVKVATQTPPVRSGRRV 1042

Query: 1016 GWVTFSEPAKEYEANFF 1032
             +++  +     +A FF
Sbjct: 1043 VFLSLDDSTGPVDATFF 1059


>gi|223940255|ref|ZP_03632114.1| DNA polymerase III, alpha subunit [bacterium Ellin514]
 gi|223891082|gb|EEF57584.1| DNA polymerase III, alpha subunit [bacterium Ellin514]
          Length = 1420

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 283/1043 (27%), Positives = 484/1043 (46%), Gaps = 111/1043 (10%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   ++ L +HS YS L   LS+  +++     + PA+A+TD  NL  A EF   A  AG
Sbjct: 421  KVKHYLPLNMHSYYSFLNSTLSVEGVVNLARRYELPAVALTDDGNLHGAAEFVLAAKKAG 480

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+P++G ++ +                  +P++   V   +GY  L  L+S    L   +
Sbjct: 481  IKPVLGVRVKVG----------------GIPAL-FYVENTKGYHNLCHLLSAPKELTARE 523

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R          TEGL+                    V+  RLL     F  R Y  +
Sbjct: 524  LEGR----------TEGLLA-------------------VSYNRLLA--PFFPGRFYFAV 552

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                       S+        E P VA     +    D   +DV+ ++   T++ Q+   
Sbjct: 553  N----------SREAMRDAPREWPCVAALACRYAVPGDRWKYDVVQSIRTLTLLKQEHPE 602

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            ++     + ++  EM  +F + PE L NT EIA RCSF      P  P F  +  D +  
Sbjct: 603  KIMGGQLHFRSPMEMQRMFGEHPELLVNTNEIAERCSFEFPFGPPQFPAFATR--DGLSS 660

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +    LR   + GLE R           A+ +R++++ EL++I  + +  YFL++ D +Q
Sbjct: 661  K--ALLRKLVMDGLEKRYKD-------RAEKHRKQVEEELSIIEEVGYEEYFLVMWDILQ 711

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM---PDFDIDF 422
              KK  I     RGS A S+  Y L I+ + P+RF L F RFLN DRM++   PD D+DF
Sbjct: 712  SCKKEGIE-WITRGSAADSLVCYCLEISGVCPIRFELYFRRFLNKDRMALNKLPDIDVDF 770

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              DR+D+VI  +  KYG E+ A +  F + QA+ A+ DV + L +   Q+ R  + IP+ 
Sbjct: 771  PHDRKDDVIDLIFKKYGEEKTAIVGGFSTYQARGAVADVAKVLGVSEFQIRRFTERIPHT 830

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
             A  ++ + + +     +  L +      LE+++ L+G  R+A  H  G+V+  +P+ +L
Sbjct: 831  AAIGLT-EILKEHQECGDLPLEEDPYKSALEMAEFLDGFPRYAKMHPCGLVLSRQPMHEL 889

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS-LI 601
             P +       P T ++M  +E  GLIK D L    L +++   + L QRG++ DL+ L 
Sbjct: 890  TPTF-IANKGYPTTHYDMDAVEMIGLIKMDVLAQGGLAVMRDMDEGLRQRGIQFDLAALE 948

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIV 659
            P++D   + +++  G   +  +ES  M           I+ +IA+VS+ RPG  +    V
Sbjct: 949  PWEDKRVWEMISGGGARAVHHIESPAMVSLCRMCNVSEIDGLIAIVSVIRPGAANEQKKV 1008

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G E     HP ++  LK T G+++Y+E ++QI +  +G     ADVLRRA+ K
Sbjct: 1009 KFTRRYQGMEPPSYPHPSLEACLKSTHGLVVYEEHILQICEAFAGLPPGRADVLRRALNK 1068

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
              +E +++ ++ FI+ A   G ++     ++EL + F  Y F K+H+ AY + +YQ+AW+
Sbjct: 1069 YKQETIEEIRQEFIASARARGHAEENIQEVWELASGFEGYAFCKAHSTAYGIEAYQSAWL 1128

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K +YPVEF+AA ++      + +  +  +  +  +Q++PP V+ P   F   +  I   +
Sbjct: 1129 KLNYPVEFMAAVLSNGKGFYDPL-VYVLECHRLGLQLLPPCVSEPGPHFVPTEKFIRVPI 1187

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
              IKG+   T   I++    + F+SL DF  RV +   +   +E L+  GA D FG  R 
Sbjct: 1188 RYIKGLTAKTNERILKEHQQRLFESLNDFYRRVGA---SGEEMELLLRVGAFDRFGKKRT 1244

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF---SVENSSVR--FEN 954
            +             W  +     +      ++G       +E+     +E  S R   + 
Sbjct: 1245 EQF-----------WECQFLKRAYGASMDLKQGWLLPPPGMEQLPEMQLEEPSRREQLQW 1293

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-----GNNIRLAAMVVSKQQKKT 1009
            E  + GF  SGHPL++++ I        +E   +  +     G  + L  +++ ++    
Sbjct: 1294 EAELFGFPVSGHPLELHEEI-------AWETYCSVDKLGDHIGEEVILCGLIIEQRMHHQ 1346

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
              G  + ++T ++     E   F
Sbjct: 1347 TTGELMKFLTLADWTGIIETELF 1369


>gi|31544436|ref|NP_853014.1| DNA polymerase III subunit alpha [Mycoplasma gallisepticum str.
           R(low)]
 gi|31541281|gb|AAP56582.1| DNA polymerase III alpha subunit [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930492|gb|ADC30431.1| DNA polymerase III alpha subunit [Mycoplasma gallisepticum str.
           R(high)]
          Length = 1023

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/577 (36%), Positives = 333/577 (57%), Gaps = 24/577 (4%)

Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
           ++RL++EL +I ++ FS YFL V DFI  AK+  I +GPGRGS AGS  +Y L IT I+P
Sbjct: 257 QKRLNYELAIIKKLNFSDYFLFVYDFINHAKQQGIVIGPGRGSAAGSFISYLLNITTINP 316

Query: 398 LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
           + + L+FERFLNP R SMPD D+D    RR+EV+ Y+ NKY  + VA IITF  ++ K A
Sbjct: 317 ISYGLIFERFLNPQRKSMPDIDVDIMDSRREEVVDYLFNKYSKDNVAHIITFQRIKVKNA 376

Query: 458 LRDVGRALQMPYSQVDRLCKLIPNDP-------AHPVSLQAIADDSRF--------REAR 502
           +RDV R L +  S+ D +   +  D         +  +L+ + + +          R   
Sbjct: 377 IRDVCRVLDLKTSETDEVINFVSYDEISDWEKNQNATALKKVLNCNECDLDQKKCKRSGA 436

Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM-YRDVRSDLPVTQFNMK 561
           ++   + ++ +++Q +  + R    HAAG+V G+  L+Q +P+ Y + RS   V+QF+M+
Sbjct: 437 VSCYVISKIFDLAQTIFNVPRQTGLHAAGVVCGNDALTQTIPLQYLNNRS---VSQFSME 493

Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IPFDDHETYHLLTTKGTLG 619
           ++E+ GL+K D LGLKTLT++ + ++ L +     D  +  IP ++  T++LL    T G
Sbjct: 494 YLEQFGLMKIDLLGLKTLTIIDE-INSLVKLNYDRDFDINNIPLNNKNTFNLLKKGYTKG 552

Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
           +FQLES GM+  L+ + P+ IEDI  + +LYRPGP DNI  Y  R+    +   +   + 
Sbjct: 553 VFQLESLGMQNVLKKVLPESIEDISIISALYRPGPQDNIDEYVKRRFSNTEFNYLSEDLI 612

Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
            +LK T G+IIYQEQV+  A +++ +  ++AD  RRA+ KK +  + K K+ FI  A KN
Sbjct: 613 EILKPTHGIIIYQEQVINTAMVVANFDAAQADSFRRAISKKDEALLLKDKKAFIEQAIKN 672

Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
             S+  A+ IFE L KFADYGFN SH+ +YA ++YQ A++K +YP EF    +   +D+ 
Sbjct: 673 RYSEQKALEIFEYLHKFADYGFNHSHSLSYAFLAYQMAYLKANYPKEFYLILLKNNVDSK 732

Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--RIYYSLAAIKGVGTTTARHIMEAS 857
            K+  +  +  + NI I+ P++N     F +  +  +I      I G+G   A  I++A 
Sbjct: 733 VKLTDYFIEIIERNIGIIKPNINLSDWSFSLSADHQKIILGFNMINGLGNENANKIVQAR 792

Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +K F+   D    +    + + + + LV  G  D F
Sbjct: 793 NNKQFEGFIDCLINLAKNGITKSLFDKLVNVGVFDQF 829



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 15/107 (14%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV+L   S YSLL   LS++ I+D    + Q  + +TD N L+ A+EF   A    + PI
Sbjct: 2   FVNLNTRSYYSLLSTNLSVSEIIDFAVKNNQTHVCLTDLNVLYGAVEFYNLAKKNHLIPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
           IG ++                   T   +VL+     GY  LI++ S
Sbjct: 62  IGLEI---------------FDHSTNSELVLIAKNNSGYLNLIKISS 93


>gi|326333953|ref|ZP_08200183.1| DNA polymerase III, alpha subunit [Nocardioidaceae bacterium Broad-1]
 gi|325948232|gb|EGD40342.1| DNA polymerase III, alpha subunit [Nocardioidaceae bacterium Broad-1]
          Length = 1141

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 298/1078 (27%), Positives = 481/1078 (44%), Gaps = 133/1078 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            +  L  HS +S L+GA S + ++ +        IAITD +  + A  F++ A   G    
Sbjct: 53   YAELHAHSDFSFLDGASSPSALVSEAIRKGLRGIAITDHDGFYGAPAFAEAAQKLGPTGE 112

Query: 67   ---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
               +  + G +L + +        Q     P    +++L    EGY++L   ++   L  
Sbjct: 113  SDRLLTVYGAELSLGL-----TKPQNGVADPEGSHLLVLARGVEGYRQLAGAITEAQLRG 167

Query: 124  QGKQSVRICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181
              K      L  L +    G  ++LTG   G + +A        A + L      FG D 
Sbjct: 168  DEKGRPTYDLDELADRARSGSWLILTGCRKGAVRQALTGTGPIAAARALRELTDRFGRDN 227

Query: 182  LYVNLQRHRGY--DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHST 238
            + V L   RG+  D Y    +  +A    LP VATNN  + + + +   D L AV A  T
Sbjct: 228  VVVELT-DRGHPTDSYDNDLLAGIAREAGLPTVATNNVHYATPDRHRVADALAAVRARRT 286

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +          P  Y+++  EM  +F   P A+  +VEIA  C+F L+   P LP+    
Sbjct: 287  LSEIAGWLPAGPVAYVRSGEEMEHLFRRYPGAVARSVEIAEECAFDLRKATPKLPKRGIP 346

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E +       + LR+    G   R AQ   A     +  R+R++ EL+VI R  F GYF+
Sbjct: 347  EGETAA----SRLRHLTEEGFAERYAQAYAADPEFVEKARERVEHELDVIERKDFPGYFV 402

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV D + +A+  +I +  GRGS A S   YAL IT IDP+ + L FERF++  R   PD 
Sbjct: 403  IVHDIVDYARSQDI-LCQGRGSAAASAVCYALGITAIDPVFYELPFERFISEHREEEPDI 461

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF  D+R++VI++V ++YG    AQ+      + K A+RD  +AL     Q D   K 
Sbjct: 462  DVDFDSDKREKVIQWVYDRYGRRNAAQVANIVGYRPKMAVRDAAKALGHSPGQQDAWSKH 521

Query: 479  I-------PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            +       P+D   P  + A+A                       ++ G  RH   H+ G
Sbjct: 522  VGYSRVEAPDDVGIPAPVLALA----------------------AEIHGAPRHLGIHSGG 559

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +V+ + P+ ++VP+ R       V Q++    E  GL+KFD LGL  L  L   ++   +
Sbjct: 560  MVLTEEPIGEVVPIERARMDKRTVIQWDKDAAEYMGLVKFDLLGLGMLAALDHMMNLARE 619

Query: 592  R-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              G    L+ IP ++   Y +L    ++G+FQ+ES      L  +QP C  D+   ++L 
Sbjct: 620  HLGEGWTLATIPKEEPAVYDMLCRADSIGVFQVESRAQIGTLPRLQPRCFYDLAIEIALI 679

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+    V  Y  R  G+E +   H L+ P+L+ T+GV ++QEQ+M++ ++L  +S  
Sbjct: 680  RPGPVQGGAVHPYVRRATGREPVSYSHELLIPVLERTRGVPLFQEQLMEMGRVLGDFSHD 739

Query: 709  EADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            +AD+LRRAMG K+  E +D  KE+   G    G+++  A  ++  +  FA++GF +SHA 
Sbjct: 740  DADLLRRAMGSKRGVERIDSLKEKLYRGMRDKGMTEQTAKAVYTQILSFANFGFAESHAL 799

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV--NTPC 825
            ++A + Y ++W K HYP  FLA  +  +       +   QDAR+  +++  P +  +   
Sbjct: 800  SFAKLVYASSWFKLHYPAAFLAGLLRAQPMGFYSPQSLTQDARRHGVEVRRPDLIRSQAA 859

Query: 826  VDF------------------------------------KVGDNRIYYSLAAIKGVGTTT 849
             D                                     + G+  +   L +++G+G   
Sbjct: 860  ADLEPLDDDVSPTGKDECRLDGTKTEWVPGTPDPTPEHRRDGNFAVRLGLDSVRGIGKDV 919

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A+ I++A  + PF    D   R     L R  LE+L  AG LD F  SR Q L       
Sbjct: 920  AQRIVKARTEAPFKDSLDLSRRA---GLERAQLEALATAGCLDVFTSSRRQALWQ----- 971

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN--EQRVLGFYFSG-- 965
              A W E                   D++   +F+ E  ++   +  E+ +   + +G  
Sbjct: 972  --AGWTETE-----------------DQLEGVRFTAETPALPGLDPVEETLADLWATGVT 1012

Query: 966  ---HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
               HP    +  L   G+    +   +  G  I +A +V  +Q+  T  G     VTF
Sbjct: 1013 PGSHPFAHLRAGLTAAGLPSIGDLPTSEPGRRITVAGLVTHRQRPGTAGG-----VTF 1065


>gi|291320098|ref|YP_003515356.1| DNA polymerase III subunit alpha [Mycoplasma agalactiae]
 gi|290752427|emb|CBH40398.1| DNA polymerase III, alpha subunit [Mycoplasma agalactiae]
          Length = 977

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 283/907 (31%), Positives = 450/907 (49%), Gaps = 117/907 (12%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+ L   + YS LE  + + +++     + + A+ ++D NN+F+  EF ++  A  I+PI
Sbjct: 4   FIDLYNTTEYSFLESLIKVKDLVRLSKENGKRAVVLSDHNNMFALGEFLKQCAAYEIKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG  LD++                     +LL    EG++ +  L+     L + ++ +R
Sbjct: 64  IGVDLDVEES-----------------RFILLAKNYEGFKLINSLI-----LKKSREEIR 101

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                L +I ++ L ++   S+G                            LY   + H+
Sbjct: 102 -----LNDIISDNLFIIDHPSNG----------------------------LYAKNEHHK 128

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSE------EDYEAHDVLMAVAHSTVVSQKD 244
             D           Y    P  +  NS+++ E      ED E  ++L+ + ++       
Sbjct: 129 LSDNKN--------YYISSPDSSIPNSIYVKENKLIDVEDNETLNILLKLGNN------- 173

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                     K  +   S F D         +   R +FI+       P+   K     +
Sbjct: 174 ----------KEANYNFSYFEDYT----TDSDFLARINFIVDNCNVTFPKKELKLASFCE 219

Query: 305 KEEEN-ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            EE+N EL    +  ++  LA+   A   +      R+++E +VI ++ F  YFLI++D 
Sbjct: 220 SEEKNYEL---FIEKIKQGLAKHKKALLPYKTAVNDRINYECSVIKKLGFINYFLIISDM 276

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           I++A  N I +GPGRGS AGS+ +Y L IT I+PL+++LLFERFLN D++S PD DID  
Sbjct: 277 IEYADNNGISIGPGRGSAAGSLISYLLGITKINPLKYNLLFERFLNIDKVSWPDIDIDIQ 336

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            DRRDE+  Y+QNKYG  RVA I TF ++  K A+RDVGR L +P S V+R+ K I    
Sbjct: 337 DDRRDEIFAYLQNKYGKSRVAVISTFQTMGTKQAIRDVGRMLDIPLSDVNRISKSINAFA 396

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +    +  A +  F +   +    ++ +    KL+GL R    HAAG++I D+ L++ V
Sbjct: 397 NYSSIEEEFAKNLTFNKEVSSLKDYEKFINHVSKLQGLPRQYGIHAAGLIISDKDLNEYV 456

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ------KSLDFLAQRGVKVD 597
           P++ +  S L V Q  M+++E  GL+K D LGLKTLT ++        L    Q   + D
Sbjct: 457 PVFENAYSFLQV-QVPMEFVEDFGLLKIDLLGLKTLTEIKHIEKRISKLKLFDQLVYEND 515

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           L L    D    +LL    T G+FQ+ESSGM+  ++ +     ED+ A++SLYRPGP + 
Sbjct: 516 LEL---QDPMAINLLNNGNTEGLFQIESSGMKSTIKRVGIQSFEDLFAIISLYRPGPKEY 572

Query: 658 IVVY-NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
           I  Y NNRKN K  I  I P+ D ++  T G+IIYQEQ+M+IAQ ++  S ++AD+LRRA
Sbjct: 573 IKDYANNRKNPK-LIEKIDPVYDEIVAPTYGIIIYQEQIMEIAQAVAKMSFAQADLLRRA 631

Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
           + KK + E+ K +  F  G  +N  S      I++ + KFA YGFNKSHA +YA ++ + 
Sbjct: 632 ISKKNEVELHKYRNTFFEGGLRNNFSIESLTKIYDKIEKFAQYGFNKSHAVSYAYLTMKM 691

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV----NTPCVDFKVGD 832
           A+ K  YP  + +A ++    +  KI  F  + +  N  +  PS+    N+  VD   GD
Sbjct: 692 AYYKARYPQVYFSALISNSYGDQNKIASFVNELKNMNFSVYSPSIIHFTNSAIVD--NGD 749

Query: 833 NRIYYSLAAIKGVGTTTARHI-MEASADKPFDSLEDF--CSRVDSKKLNRRVLESLVFAG 889
             IY     IKG+G  + + I ++   +  +  L  F    R+    +   ++ +L+ A 
Sbjct: 750 --IYLPFNMIKGLGAESIKKIALDIKENGQYKDLSLFEILLRLRFAGIKNSMISTLIRAN 807

Query: 890 ALDCFGY 896
               FGY
Sbjct: 808 VFRNFGY 814


>gi|170721609|ref|YP_001749297.1| error-prone DNA polymerase [Pseudomonas putida W619]
 gi|169759612|gb|ACA72928.1| DNA polymerase III, alpha subunit [Pseudomonas putida W619]
          Length = 1026

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 307/1027 (29%), Positives = 477/1027 (46%), Gaps = 87/1027 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  L   S++S   GA S   +L +       A+AITD   L   +   Q A A  I
Sbjct: 3    APGYAELHCLSNFSFQRGASSAEELLRRAREQGYQALAITDECTLAGIVRAWQAAKAQQI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G ++        ++ N         P +VLLV    GYQ L  L++R     Q K 
Sbjct: 63   RLIVGSEV--------RLHNG--------PKLVLLVQDLSGYQNLCALITRARRRAQ-KG 105

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            S ++    L+E+   GL+ L              +S  +A  + L  + +FG+RL++ + 
Sbjct: 106  SYQLFPDDLREL-HRGLLALW----------LAEDSRDLATGQWL--QGVFGERLWLGVH 152

Query: 188  RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
             HRG D   R +++  LA    +  VA  +            D + A+     V++  R 
Sbjct: 153  LHRGSDDETRLARLRGLAGQLGIRAVACGDVHMHVRGRRALQDCMTAIRQHCSVAEAGRF 212

Query: 246  PRVTPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                 + +L+   ++  ++ +DL   L  T+ IA RC F L       PR +  E     
Sbjct: 213  LFANGERHLRTLEQLAELYPADL---LSETLCIAERCQFDLGELRYQYPRELVPE----G 265

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +   + LR     GL  R   G   K       R+ L  EL +IA + +  YFL V D +
Sbjct: 266  QTPASWLRQLCERGLAHRWPSGPSDK------VREVLAKELALIAELGYESYFLTVHDIV 319

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+  +I +  GRGS A SV  + L IT++DP++  LLFERFL+ +R   PD D+DF  
Sbjct: 320  AFARSQHI-LCQGRGSAANSVVCFVLGITELDPMKHRLLFERFLSRERNEPPDIDVDFEH 378

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVI+YV  +YG  R A      +  A  A+RDV R L +P  QVD L K       
Sbjct: 379  DRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARVLGLPADQVDALAKCCGRWS- 437

Query: 485  HPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                   I D+ R  EA      PS+ R+L ++ +L G  RH S H  G VI ++PL  L
Sbjct: 438  -----DRIPDEQRLAEAGFEPGSPSLRRILVLAAQLIGFPRHLSQHPGGFVISEQPLDHL 492

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+     ++  V Q++   ++  GL+K D L L  L+ L++  D + Q RG  + L+ I
Sbjct: 493  VPVENAAMAERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLMQQHRGRHLTLATI 552

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D + 
Sbjct: 553  PAEDPATYAMISRAETMGVFQIESRAQMAMLPRLKPSTFYDLVIEVAIVRPGPIQGDMVH 612

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+  +E +      +  + + T GV ++QEQVM++A + + YS  EAD LRR+M  
Sbjct: 613  PYLRRRLKQEPVTYPSLKLKEVFERTLGVPLFQEQVMELAMVAADYSPGEADQLRRSMAA 672

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    ++  +ER + G  +NG     A  IFE +  F  YGF +SHAA++A++ Y ++W
Sbjct: 673  WKRHGGLEPHRERLVQGMLRNGYDLAFAERIFEQIKGFGSYGFPESHAASFALLCYASSW 732

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDN 833
            +K H P  F  A +           +  Q+AR+  I++ P  V     D  +     G  
Sbjct: 733  LKCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVGHSQWDCTLEPVAEGAL 792

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I   L  I+G     AR +  A A +P+  +ED C R     L+ R    L  AGAL  
Sbjct: 793  AIRLGLRQIRGFAEADARRLEAARARRPWRDVEDLCLRAG---LDSRARARLADAGALRA 849

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R Q           A+W +         +FA  + T    + L   +V    V   
Sbjct: 850  LARDRHQ-----------ARW-QVAAVQPQLPLFAELQATPEAAVALPAPTVGEDLV--- 894

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +   LG     HPL + +  LR +G +  +E      G+ + +A +VV +Q+ +T  G 
Sbjct: 895  ADYATLGTTLGPHPLTLLRSRLRVLGCRSSQELAGVEHGDAVAVAGLVVGRQRPQTASG- 953

Query: 1014 RIGWVTF 1020
                VTF
Sbjct: 954  ----VTF 956


>gi|327480947|gb|AEA84257.1| error-prone DNA polymerase [Pseudomonas stutzeri DSM 4166]
          Length = 1026

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 298/1024 (29%), Positives = 469/1024 (45%), Gaps = 97/1024 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + ++       A+AITD  +L   +   Q +   G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFERAKRQGYDALAITDECSLAGIVRAWQASKDTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGK-QS 128
            IG ++ I+                  P +VLLV    GYQ L +L++R     ++G+ Q+
Sbjct: 65   IGSEVQIE----------------GGPKLVLLVENLTGYQALCQLITRARRRAEKGRYQA 108

Query: 129  VRICLSWLQEIGTEGL--IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            +R  LS   E   EGL  I L G +    D  +                  F +RL++ +
Sbjct: 109  LREDLS---EGSLEGLLAIWLPGHAGADTDGRWLLER--------------FRERLWLGI 151

Query: 187  QRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            + HRG D   +  Q +  A    +P VA  +    +       D + A+ H   V++   
Sbjct: 152  ELHRGPDDTLQLRQSLTQASRLGIPAVACGDVHMHARGRRALQDCMTAIRHHLPVAEAG- 210

Query: 246  PRVTP--DHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFIL---QVHAPILPRFIEKE 299
              + P  + +L++R E+  ++   P AL   T+ I++RC F L   + H P        E
Sbjct: 211  CHLFPNGERHLRSREELAQLY---PAALLSETLRISQRCHFQLDQLKYHYP-------HE 260

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                  +  + LR     G   R   G   K       R +L+ EL +IA + +  YFL 
Sbjct: 261  LVPPGHDSTSWLRKLVEDGARWRWPDGIPEKA------RAQLEHELELIADLHYESYFLT 314

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++A++  I +  GRGS A S   + L IT++DP+R  LLFERFL+ +R   PD D
Sbjct: 315  VHDIVRFARERGI-LCQGRGSAANSSVCFVLGITELDPVRSKLLFERFLSRERNEPPDID 373

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  DRR+EVI+YV  +YG  R A      S +A  ALRDV +AL +P  Q++ L    
Sbjct: 374  VDFEHDRREEVIQYVFQRYGRNRAALTAVASSYRATGALRDVAKALGLPPDQINALAGCC 433

Query: 480  PNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                 H      I DDSR REA     +P + R+L ++  L G  RH S H  G VI ++
Sbjct: 434  GRWSEH------IPDDSRLREAGFDPDNPVLRRVLVLTDALIGFPRHLSQHPGGFVISEQ 487

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596
            PL  LVP+     +D  V Q++   ++  GL+K D L L  L+ +++  D +   RG + 
Sbjct: 488  PLDTLVPIENASMADRTVIQWDKDDLDAVGLLKVDVLALGMLSAIRRCFDLIEHYRGTRW 547

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI- 655
             ++ +P +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI 
Sbjct: 548  TIATLPAEDKPTYEMISRADTIGVFQIESRAQMAMLPRLRPKTFYDLVIQVAIVRPGPIQ 607

Query: 656  -DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
             D +  Y  R+N +E++      + P+ + T GV ++QEQVM++A + + Y+  EAD LR
Sbjct: 608  GDMVHPYLRRRNKEEEVDYPSEELKPVFERTLGVPLFQEQVMELAIVAAEYTPDEADKLR 667

Query: 715  RAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RAM   K    ++  + R        G        IFE +  F  YGF +SHAA++A+++
Sbjct: 668  RAMAAWKRHGSLEPHRVRLTERMLAKGYQPDFIARIFEQIKGFGSYGFPESHAASFALLT 727

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y + W+K H P  F  A +           +  QDAR+  ++I P  V     D  +  +
Sbjct: 728  YASCWLKRHEPAAFACALINSWPMGFYNPDQILQDARRHRLEIRPVDVRHSGWDCSLEPS 787

Query: 834  R-----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            R     I   L  ++G   T A+ I  A   +PF  + D C R +   L  R  E L  A
Sbjct: 788  RQAQPAIRLGLRMVRGFRETDAQRIEAARQRQPFTDIHDLCLRAE---LEPRAREQLADA 844

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA           L+ L   +  A+W           +FA         I L   SV   
Sbjct: 845  GA-----------LRGLAGHRHRARWAVAG-IEPQLPLFASLPAPEETSINLPLPSVGED 892

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
                 N+   LG     HPL + +  L+    +   E      G  + +A +V+ +Q+ +
Sbjct: 893  ---LFNDYATLGTTLGPHPLLLLRDELKARRCRSSRELGTIEHGRPVSVAGLVIGRQRPQ 949

Query: 1009 TRKG 1012
            T  G
Sbjct: 950  TASG 953


>gi|92119219|ref|YP_578948.1| DNA polymerase III, alpha subunit [Nitrobacter hamburgensis X14]
 gi|91802113|gb|ABE64488.1| error-prone DNA polymerase, DnaE-like protein [Nitrobacter
            hamburgensis X14]
          Length = 1087

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 297/1027 (28%), Positives = 475/1027 (46%), Gaps = 90/1027 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV S +S L GA S   +    A+    A+AI D N+L   +   + A   G++ I
Sbjct: 5    YAELQVTSHFSFLRGASSCEELFAHAASLGIEALAIVDHNSLAGIVRAHEAAKVTGVRLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+LD  + D +              S+++  +    Y RL  L+S +     GK   +
Sbjct: 65   VGCRLD--LADGM--------------SVLVYPTDRPAYSRLCRLLS-IGKTRGGK--AK 105

Query: 131  ICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
              L+W   +  +EGLI                 +     +R+   +  FGDR ++ L  R
Sbjct: 106  CILNWEDVVDWSEGLIAALVPDV----------ADDACAQRIRRLRDTFGDRAHMALTLR 155

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
             R  D+ R  ++  +A    +  V TN+ LF         DV+  + H+  + +   R  
Sbjct: 156  RRPNDQMRIHELNNMAQRFRVATVVTNDVLFHEPARRILQDVVTCIRHNVTIDEAGFRRE 215

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK   EM  +F+  PEAL  TV IA RC+F +   A   P   E+    +  ++
Sbjct: 216  RHADRYLKPPDEMTRLFARYPEALARTVAIAGRCTFSMDELAYQYPE--ERTMPGLTPQQ 273

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L      G   R  +G         + R  L+ EL +I R++++ YFL V   +++A
Sbjct: 274  A--LEKLTWEGAAERYPEGL------PDEVRPTLEHELRLIERLQYAPYFLTVNSIVRFA 325

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +I +  GRGS A S   Y L IT IDP R  LLFERF++ +R   PD D+DF  +RR
Sbjct: 326  RSRDI-LCQGRGSAANSAVCYVLGITSIDPERNDLLFERFVSEERREPPDIDVDFEHERR 384

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN------ 481
            + V+++V   YG    A   T    +AK ALRDVG+AL +    +  L   I        
Sbjct: 385  EIVMQWVFETYGRNHAALCSTVIRYRAKGALRDVGKALGLTEDLIKLLSSQIWGWSEEGV 444

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P H   L    DD R + A          + ++++L G  RH S H  G V+    L +
Sbjct: 445  EPKHAEELNLNLDDRRLKLA----------IVLARELIGTPRHLSQHPGGFVLTHDRLDE 494

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            LVP+      +  V +++   I+    +K D L L  LT ++++ +FLA+ +G ++DL+ 
Sbjct: 495  LVPIEPAAMPNRQVIEWDKDDIDALKFMKVDCLALGMLTCMKRAFNFLAEAKGTELDLAT 554

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            IP +D  TY ++    TLG FQ+ES      L  M+P    D++  V++ RPGPI  D +
Sbjct: 555  IPSEDPRTYAMIRKADTLGTFQIESRAQMAMLPRMKPRTFYDLVIEVAIVRPGPIQGDMV 614

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R+ GKE +V   P ++ +L +T GV ++QEQ M++A   +G++  EAD LRRAM 
Sbjct: 615  HPYLRRREGKEPVVFPKPELEKVLGKTLGVPLFQEQAMRVAIECAGFTPGEADQLRRAMA 674

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K    + K K++ I+G    G  +  A   F  L  F  YGF +SHAA++A+I+Y ++
Sbjct: 675  TFKFTGGVSKFKDKLINGMVDRGYDREFAEKTFSQLEGFGSYGFPESHAASFALIAYASS 734

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVDFKVGDNR 834
            WMK  +P  F AA +  +        +  +DAR   +++ P  +N     C    + D+ 
Sbjct: 735  WMKCWHPDVFCAALLNAQPMGFYAPAQIVRDARDHGVEVRPVCINASRWDCTLEPINDDG 794

Query: 835  IYYSLA--AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
                L    I+G+       I+ A AD+PF+S++D   R D        + SLV     D
Sbjct: 795  FAVRLGFRLIRGLSNKNGAEIVAARADQPFESVDDLWRRADIP------VASLVQLAKAD 848

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                      +SL   ++ A W  K   ++   +FA    T  +  T+E+      S+R 
Sbjct: 849  AMN-------ESLGLARREALWALKALRDEPLELFA--AATQREARTIEEVREPAVSLRL 899

Query: 953  EN-------EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                     + R +G     HP    +  L    I    +++    G  +  A +V+ +Q
Sbjct: 900  MTSGGEVVEDYRHVGLTLRQHPASFLRADLSSRRIVTCADAMNACDGKWLTTAGLVLVRQ 959

Query: 1006 QKKTRKG 1012
            +  + KG
Sbjct: 960  KPGSAKG 966


>gi|331699065|ref|YP_004335304.1| Error-prone DNA polymerase [Pseudonocardia dioxanivorans CB1190]
 gi|326953754|gb|AEA27451.1| Error-prone DNA polymerase [Pseudonocardia dioxanivorans CB1190]
          Length = 1142

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 280/914 (30%), Positives = 442/914 (48%), Gaps = 52/914 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS++S L+GA     ++++ A     A+A+TD + ++  + F++ A   G+  I
Sbjct: 64  YAELHCHSNFSFLDGASHPEELVEQAARLGLDALALTDHDGMYGVVRFAEAAAELGVATI 123

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL--DQGKQS 128
            G +L + +        Q   P P    ++LL    +GY+ L  ++S   L   ++G+  
Sbjct: 124 FGAELSLGLS-----APQNGVPDPEGSHLLLLARDPDGYRALCRVISAAQLRGREKGRPV 178

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            R+     Q  G   ++ LTG   G + +A        AE+ L    + FG         
Sbjct: 179 YRVDEIVEQTAGH--VVALTGCRKGAVRQALAAGGPVAAEEALGWLVERFGREGVAVELT 236

Query: 189 HRGY--DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
           H+    D  R   +  LA    LP VAT  + +     Y     + AV     + + D  
Sbjct: 237 HQALPGDTERNDALAALAARAGLPTVATTGAHYAEPGRYPLAAAMAAVRSRRSLDEADGW 296

Query: 246 --PRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             P  T    L++ +EM + F D  P A+     + R C+F + + AP LP F   E  D
Sbjct: 297 LPPAGT--ARLRSGAEMAARFEDRYPGAVARAAALGRECAFTIDLVAPDLPPF---EVPD 351

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             ++E + L  +   G   R   G+ A+   A +  +R   E+ +I   KF GYFLIV D
Sbjct: 352 -GRDEASLLWERVRKGAMCRY--GSQAENPEAAETIER---EMEIIVAKKFPGYFLIVHD 405

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +++ ++N+I +  GRGS A S   +AL IT++D +   LLFERFL+P R   PD D+D 
Sbjct: 406 IVEFCRRNDI-LCQGRGSAANSAVCFALGITNVDAVACGLLFERFLSPARDGYPDIDLDI 464

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              RR+EVI+YV  +YG    AQ+    + + ++A+RD+ RAL     Q D   K I   
Sbjct: 465 ESGRREEVIQYVYGRYGRGCAAQVANVITYRPRSAVRDMARALGFSPGQQDAWSKQIER- 523

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                    I             P+V   L ++++L G  RH   H+ G+VI DRP+S++
Sbjct: 524 ------WHGIGGSDGPPVPEGMPPAV---LALAEQLLGFPRHLGIHSGGMVICDRPVSEV 574

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLI 601
           VP+      +  V Q++      AGL+KFD LGL  LT L   +D + A  G++V+L  +
Sbjct: 575 VPVEWARMEERTVVQWDKDDCAAAGLVKFDLLGLGMLTALHTMIDLVAAHHGLRVELYEL 634

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
              D E Y +L    ++G+FQ+ES      L  ++P+   D++  V+L RPGPI    V 
Sbjct: 635 QPTDPEVYAMLQRADSVGVFQVESRAQMATLPRLKPERFYDLVVEVALIRPGPIQGGSVH 694

Query: 661 -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG- 718
            Y  R+   E+    HPL+   L +T GV ++QEQ+MQ+A  ++G+S ++AD LRRAMG 
Sbjct: 695 PYIRRRRDLEEWHHDHPLLAGALDKTLGVPLFQEQLMQVAVDVAGFSAADADELRRAMGS 754

Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           K+  E+M++ + RF  G + NGI+  +A  IF  +  FA++GF +SH+ ++A + YQ+AW
Sbjct: 755 KRSTEKMERLRGRFYDGMAANGITGEVAEGIFAKMLAFANFGFPESHSISFASLVYQSAW 814

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------G 831
            K +YP  F AA +  +       +    DAR+  + +  P V     +  +       G
Sbjct: 815 FKRYYPAAFCAALLNSQPMGFYSPQSLVADARRHGVLVRGPDVCEGGAEATLEPDPRSEG 874

Query: 832 DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
              I   L  ++ VG   A  I         +  L D   RV   +L     E+L  AGA
Sbjct: 875 GVAIRLGLGEVRSVGIEKAEEIEAERVRGGRYRDLADLARRV---RLTAPQAEALATAGA 931

Query: 891 LDCFGYSRMQLLQS 904
             CFG  R   L +
Sbjct: 932 FGCFGIDRRSALWA 945


>gi|18466680|ref|NP_569487.1| putative DNA polymerase III alpha subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|16505996|emb|CAD09882.1| putative DNA polymerase III alpha subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
          Length = 1172

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 294/983 (29%), Positives = 468/983 (47%), Gaps = 140/983 (14%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           L V + +SL E AL   N + KIA D    A+   D+ N+ S +   Q+A    +  I G
Sbjct: 4   LMVRTDFSLGESALKAENAV-KIARDAGYTAVISADSMNIASVIPL-QRAAGDDMAVICG 61

Query: 73  CQLDI-DMQDNLKMTNQGKTPFPTVPSIV--------LLVSTAEGYQRLIELVSRMYLLD 123
            +L++ D        +  K     + S+V         L+   +GY+ + EL++     +
Sbjct: 62  VKLNVVDDPTYEHRAHLAKESGGCMESLVRDRSYCFTALIKNEQGYRDVCELMTLANKRE 121

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI----DRAFFFNSSQVAEKRLLTFKKLFG 179
           Q     R+ L  L     +G I+L     G +    D A    +   A  R         
Sbjct: 122 QFYFVPRLALDQLAAAYAKGNIILLTSDIGSVFQRRDFAKIIGTLVTAGGR--------- 172

Query: 180 DRLYVNLQRHRG--YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
           D  Y  +  H    YD+    + +++A   ++  VA   + + + +D +  D+   V ++
Sbjct: 173 DNFYSVVYPHPTPFYDQI-NVRAMKVASELKIEPVAFYPAYYEAVDDADIKDIAHMVTNN 231

Query: 238 TVVSQKDRPRVTP--DHYLKNRSEMV------SIFSDLP--EALENTVE--IARRCSFIL 285
             + Q  R R+    D+ +  R  ++      S+  D+P   A+ +T +  I   C++  
Sbjct: 232 IKIDQPHRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEACTWRW 291

Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR---QRLD 342
               P LP+  +        +E   L   AVAGL  RL          A ++R    RL 
Sbjct: 292 HELPPALPKMAD--------DEPATLMKLAVAGLRKRLTTKEFGYTPPASEHRVYVDRLK 343

Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
           +E++ + R+ F GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  L
Sbjct: 344 YEMDTLTRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGL 403

Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
           LFERF+NP+R+ +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  
Sbjct: 404 LFERFINPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTA 463

Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS-RFREARLADPSVDRL-------LEI 514
           R   +  +           D A     + + DDS    E R    S+D+         + 
Sbjct: 464 RIYGVDAA-----------DMAVSKEFKNLEDDSLSLEELREQLASLDKYATKNPEAFKA 512

Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
           + KL+ L R    HAAG+++   PL +  P+  ++R +     F+ ++ E  GLIK D L
Sbjct: 513 ACKLQSLMRGFGRHAAGMIVAGVPLVERTPV--ELRGNARCIAFDKRYCEAMGLIKLDVL 570

Query: 575 GLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
           GL TL LL  +  ++ +  G  ++L  IP DD +         T G+FQLES  MR+ L+
Sbjct: 571 GLATLDLLDSAKRYIKESTGDDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGPMRKLLK 630

Query: 634 ----GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQG 687
               G++P   + ++A  +L+RPGPI + ++  Y +   G     S+HP++D +  ET G
Sbjct: 631 DLGGGIEPMSFKTVVATTALFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDELTAETNG 690

Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA----------- 736
           VI+YQEQ M   +LL+G++++EAD +R+A+GKK  E+M    E+F+  A           
Sbjct: 691 VILYQEQTMNATRLLAGFTMAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWIDVEMED 750

Query: 737 -----------------------------------------SKNGISKTIAVNIFELLAK 755
                                                    S+ G+S+T A  I++   K
Sbjct: 751 GTTQRIHRAEHFKCGDGALRTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEIWDAFEK 810

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
              Y FNKSH+ AY++ISYQ+ W+KTHYP EF AA++T+  ++  K +   +DA  + I+
Sbjct: 811 NGAYQFNKSHSVAYSLISYQSMWLKTHYPAEFFAAALTILGED--KHQGLVKDALTYGIR 868

Query: 816 IMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEA--SADKPFDSLEDF 868
           ++PP VN      ++     G   +Y   +A+KG      + IM A       F+SLE F
Sbjct: 869 VLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGCQAIMRAREKVGGKFESLEQF 928

Query: 869 CSRVDSKKLNRRVLESLVFAGAL 891
              V+ +  N RV ESL   GA 
Sbjct: 929 EEAVEKRACNSRVRESLQKVGAF 951


>gi|159039006|ref|YP_001538259.1| error-prone DNA polymerase [Salinispora arenicola CNS-205]
 gi|157917841|gb|ABV99268.1| DNA polymerase III, alpha subunit [Salinispora arenicola CNS-205]
          Length = 1124

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 300/1042 (28%), Positives = 477/1042 (45%), Gaps = 90/1042 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  H+++S L+GA     + ++       A+A+TD +  +  + F++ A A  +  I
Sbjct: 74   YAELHTHTNFSFLDGASHPEELAEEATRLGLTALAVTDHDGFYGVVRFAEAARALHLPTI 133

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +D    L     G+ P P    ++LL    EGY RL   +SR  L  +G +  R
Sbjct: 134  FGAELSLD----LPGPPNGE-PDPLGRHLLLLAHGHEGYARLAATISRAQL--RGGEKGR 186

Query: 131  ICLSWLQEIGTE---GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
                 L E+  E    +++LTG   G +  A        A + L     LFG + + V L
Sbjct: 187  PVYGELAEVAAELRDHVLVLTGCRKGHVPAALLTEGVDAAARELDRLTALFGAETVAVEL 246

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H    D  R   + +LA    LP VATNN  + +         L AV     + + D 
Sbjct: 247  TDHGHPVDADRNDALAELADAAGLPTVATNNVHYATPGRRRLATTLAAVRARRSLDEIDG 306

Query: 246  --PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              P     H L++ +EM + F+  P A+    E     +F LQ+ AP LP +        
Sbjct: 307  WLPAAGTAH-LRSGAEMAARFAAYPGAVARAAEFGAELAFDLQLVAPALPAYPVPS---- 361

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E + LR+    G   R          H + Y Q L+ ELN+I  + F GYFL+V D 
Sbjct: 362  GHTEMSWLRHLTARGARERYGP----PEAHPEAYAQ-LEHELNMIEELGFPGYFLVVYDI 416

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + + ++ +I    GRGS A S   YAL IT++D +R  LLFERFL P+R   PD D+D  
Sbjct: 417  VTFCREQDI-YCQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVDIE 475

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR+EVI++V  +YG E  AQ+    S + ++A+RDV +A      Q D   K +    
Sbjct: 476  SHRREEVIQHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQVDR-- 533

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                   ++A+         A+   + ++  +  ++   RH   H+ G+VI DRP+ ++ 
Sbjct: 534  -----WGSVAEVD-------AEGIPEPVVAYADAVQTFPRHLGIHSGGMVICDRPVIEVC 581

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+         V Q++       GL+KFD LGL  L  L    D +   G +++L  +  
Sbjct: 582  PVEWGRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLAALHHGYDMI---GTRLELGDMTL 638

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD E Y +L     +G+FQ+ES      L  ++P C  D++  V+L RPGPI    V  Y
Sbjct: 639  DDSEVYDMLCRADAVGVFQVESRAQMATLPRLRPRCFYDLVVEVALIRPGPIQGGSVHPY 698

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KK 720
              RKNG+E +   HPL+   L++T GV ++QEQ+MQ+A  L+G+  +EAD LRRAMG K+
Sbjct: 699  IRRKNGQEPVTYPHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAEADQLRRAMGAKR 758

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              E M +  +R  +G ++ GI+  +A +++  L  FA YGF +SHA ++A + Y ++W+K
Sbjct: 759  SVERMARIADRLYAGMAERGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASSWLK 818

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT----------------- 823
             ++P  FLAA +  +       +    DAR+  +++  P VN                  
Sbjct: 819  RYHPAPFLAALLNAQPMGFYSPQTLVDDARRHGVEVRRPDVNASGAGAVLESTPNTRWGS 878

Query: 824  ----PCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLN 878
                P   + +G   +   L  ++ +G   A  I+ E +A   +  + D   R     L 
Sbjct: 879  QPGEPPHAWGLGGPAVRLGLDGVRALGAEVAERIVAERTAHGLYQDMSDLARRA---GLT 935

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
               LE+L  A A  CFG +R Q L +     +          ++ + +     GT +   
Sbjct: 936  AAQLEALATADAFACFGVTRRQALWAAGAAAQ----------DRPDRLPGTVPGTVAP-- 983

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
            TL   +  +   R   +    G     HP    +  L  +G    ++      G  IR+ 
Sbjct: 984  TLPGMAAVD---RLVADVWATGLSPESHPARFIRDQLDALGAVPIDQLARVEPGRRIRVG 1040

Query: 999  AMVVSKQQKKTRKGSRIGWVTF 1020
             +V  +Q+  T  G     VTF
Sbjct: 1041 GIVTHRQRPATAGG-----VTF 1057


>gi|302037566|ref|YP_003797888.1| DNA polymerase III subunit alpha [Candidatus Nitrospira defluvii]
 gi|300605630|emb|CBK41963.1| DNA polymerase III, alpha subunit [Candidatus Nitrospira defluvii]
          Length = 1033

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 299/1052 (28%), Positives = 497/1052 (47%), Gaps = 123/1052 (11%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL  HSSYS + G  +L  +        Q  +A+TDTN L+ A+ F + A  AG+
Sbjct: 2    SSGFVHLHTHSSYSPMWGIPTLEALCQAARTQGQDRLALTDTNGLYGAIRFLEVAQHAGL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG +L  +                     VLL  T  GY  L  L+S  +     ++
Sbjct: 62   KPIIGAELVHEAH-----------------RAVLLAKTPAGYANLCRLLSVRH-----EE 99

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            S   C++ +      GLI+L+   S                  L  ++K   + LYV L 
Sbjct: 100  STFDCIAAVARYRA-GLIILSDDLSA-----------------LRAWRKDSQEDLYVELS 141

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
               G D     + +  +  + LP VAT  + FL   D+E H +L A+A +T +S + RP 
Sbjct: 142  P--GSD---IQEALTFSRGNRLPPVATTRAAFLHPADFETHRLLRAIADNTTLS-RLRPE 195

Query: 248  --VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                P H+L + + +      + EAL N+  IA  C         I P F +     +  
Sbjct: 196  RCCAPSHWLMSPAGIERYLPHVSEALTNSRRIADDCFTDWTFKETIFPSFRQ-----LST 250

Query: 306  EEENE-LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            E   E LR K   G + R        G  ++  R R++ EL VI   +++ YFL+V + +
Sbjct: 251  EAAFESLRTKTYEGAQRRY-------GTLSEAVRHRIEVELAVIREKRYADYFLVVDEIV 303

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            + A +       GRGS A S+ +Y L IT +DP+R +LLFERFLNP R   PD DIDF  
Sbjct: 304  REAPRTC-----GRGSAAASIVSYCLGITHVDPIRHNLLFERFLNPGRHDPPDIDIDFPW 358

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN--- 481
            D R +++ +V  +YG ++ A +    +L A+AA+R++ +   +P +++ +   L+     
Sbjct: 359  DERPKILEWVFARYGAQQAAMVANQNTLAARAAMREIAKVYGLPAAEIGKALDLLHRRAD 418

Query: 482  --DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              +     +LQ  A +   R  +L  P  D L    Q L+G +RH S H  G+V+    +
Sbjct: 419  FVNVTENSTLQTWASEV-CRALQLRPPWPDILFRAGQ-LQGHFRHLSLHPGGVVLVPDEI 476

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
             + VP+     S  PV Q+     E AGL+K D LG ++L +++ +L  +    G  +D 
Sbjct: 477  RRYVPVETSA-SGWPVIQWEKDQAEDAGLVKIDLLGNRSLAVIRDALAAVHHNTGRLIDY 535

Query: 599  SLI-PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM----------QPDCIEDIIALV 647
             L  P  D  T  L+    T+G F +ES   R  L+ +            D  E ++ + 
Sbjct: 536  ELWDPISDPVTRELIRRGETMGCFYVESPATRLLLKKLWTTMPQARRAHADVFEYLVVVS 595

Query: 648  SLYRPGP---IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            S+ RP      D+ V    R++      S HPL+D +L ET G+++YQE VM++A  L G
Sbjct: 596  SIIRPAANVYADDFV----RRSHGHPYRSWHPLLDEVLAETHGIMVYQEDVMKVAVALGG 651

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKER-FISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            +SL + D LR+ + KK KE   +  +R F  GA+   + ++    I+ ++  F+ Y F K
Sbjct: 652  FSLHDGDQLRKILSKKHKERQLRDYQRQFYEGAAARDVHRSTIDKIWAMIMSFSGYSFCK 711

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
             H+A+YA +S+++A+++ HYP EFLAA ++ +         +  + R+  + I+PP +N 
Sbjct: 712  PHSASYAQVSFKSAYLRAHYPAEFLAAVISNQGGYYSAF-AYLSEGRRMGLTILPPDINV 770

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVL 882
                ++  +  +   L  +K +    A+ I+    D   + SL+DF  RV+ +     + 
Sbjct: 771  SDWPYRGSNRAVRVGLMQLKALRKEFAQRIVVERQDHGAYRSLQDFLVRVNPEIAQATL- 829

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
              L+ AG   CF           D+I       E  R      +FA + G  +  + +  
Sbjct: 830  --LIKAG---CF-----------DSIAG-----ELTRPALIWRLFAAQSGKPAGYLPIPP 868

Query: 943  -FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
             +S +    +  +E  + GF  S HPL+++K ++  +      + +A   G ++ L   +
Sbjct: 869  DYSPQQ---KLSHELELFGFPLSEHPLELFKDVVASLSYLPARD-LAKHVGKHVTLLGWI 924

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V+++   T++G  + +VTF +    Y+A FFP
Sbjct: 925  VTEKIVSTKQGEPMEFVTFEDQTSLYDATFFP 956


>gi|115380095|ref|ZP_01467134.1| error-prone DNA polymerase [Stigmatella aurantiaca DW4/3-1]
 gi|115362901|gb|EAU62097.1| error-prone DNA polymerase [Stigmatella aurantiaca DW4/3-1]
          Length = 984

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 295/997 (29%), Positives = 463/997 (46%), Gaps = 111/997 (11%)

Query: 42   PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
            PA+A+TD + L+  ++    A   G++ I+G +L +          +G       P +V+
Sbjct: 10   PALALTDGDGLYGVVKAHLAAREHGLKLILGTELTL---------TEG-------PPVVV 53

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG--TEGLIMLTGGSSGPIDRAF 159
                A GY  +  LVS   +     ++    L W +E+   +EGLI L      PI+   
Sbjct: 54   YAMDAGGYANMCRLVSASRMAHPKGET---GLPW-REVAERSEGLIALLP-HPAPIE--- 105

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSL 218
                 QV         + F  R +V L R     D  RE++   LA    +PL A N+  
Sbjct: 106  -----QVG-----GLAEAFPGRFHVGLCRTLSAGDGPREARAEALARELGVPLCAHNDVH 155

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEALENTVE 276
                      DVL A+ H T V  K   R+ P  +  LK+ +EM  +F D PEA+E T+E
Sbjct: 156  VHHRRRQPLQDVLTAIRHKTTVD-KAGTRLLPNAERTLKSPAEMARLFRDRPEAIERTLE 214

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQ---KEEE--------NELRNKAVAGLEVRLAQ 325
            IA+RC   L               DD++    EE+          LR     GL VR   
Sbjct: 215  IAQRCHATL---------------DDLRYHFSEEDLPPGLTAMGHLRQLTEEGLGVRYPA 259

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
            G         + R++++ E+ +I  + F GYFL + D +++A+   I +  GRGS A SV
Sbjct: 260  GV------PPEVRKQVEHEMRLIEALDFPGYFLALWDIVRFARSRGI-LCQGRGSAANSV 312

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
              YAL +T IDP+R  LLFERFL+ +R   PD D+DF  +RR+EV++YV  K+G  R   
Sbjct: 313  VCYALQLTAIDPVRMGLLFERFLSMERKEPPDIDVDFEHERREEVLQYVYEKHGRHRAGM 372

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-----PAHPVSLQAIADDSRFRE 500
            +  F   + + ALR+VG++L +   QVDRL K+         P   V     A DSR R+
Sbjct: 373  VCEFICYRGRLALREVGKSLGLSLDQVDRLSKVAAASGFEVTPEVLVEAGLSAFDSRVRQ 432

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
                       L +++++EG  RH S H  G VI   PL  L+P+         V Q+  
Sbjct: 433  T----------LTLAREMEGFPRHVSIHVGGFVITREPLVDLIPVENAAMKGRTVIQWEK 482

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLG 619
                  G++K D L L  LT + K L  + +  G ++ L+ IP +D + Y +L    T+G
Sbjct: 483  DDTNALGVLKVDLLALGMLTAVSKCLALIREHFGRELSLATIPPEDPKVYDMLCEADTVG 542

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPL 677
            +FQ+ES      L  ++P    D++  ++L RPGPI   +V  Y  R+NG+E      P 
Sbjct: 543  VFQIESRAQMNMLPRLKPRTFYDLVIEIALIRPGPIVGNMVHPYLRRRNGEEVPTYPTPD 602

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE-MDKQKERFISGA 736
            +  +L++T GV ++QEQ M++A + +G++  EAD LRRA+G K  E+ ++  + RF+ G 
Sbjct: 603  VQAILEKTLGVPLFQEQAMKLAMVAAGFTAGEADGLRRALGHKRAEQLLEPYRMRFVEGG 662

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             K G        +F     FA YGF +SH+A++A+I+Y ++W+K HYP  F  A +  + 
Sbjct: 663  RKRGYPAAYMEELFAQFRGFAHYGFPESHSASFALIAYASSWLKCHYPQAFTTALLNSQP 722

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIME 855
                       DAR+  +++ P  V     D  + +   +   L  ++G+G    + +  
Sbjct: 723  MGFYAPHTLVADARRHGVEVRPVDVRHSGWDCTLEEGGALRLGLRMVRGLGEAAGKRVAA 782

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
            A A   F  L D   R    ++ R  L  L  AGAL     SR Q L  +  +       
Sbjct: 783  ARAGG-FSCLGDVARRT---RIPRHELTRLALAGALASLCGSRRQALWEIQALGPL---- 834

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
                    +++F    G   D   +E       + R   +   +G     HPL++ +P L
Sbjct: 835  ------DADDLFF---GMSMDGTQVE-LPPMGVAERVTADYETVGLSLEKHPLELLRPTL 884

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            R +G    E       G  + +  M++ +Q+  T +G
Sbjct: 885  RTLGAVSAEGLQRVSSGRRVAVGGMLICRQRPPTARG 921


>gi|259506675|ref|ZP_05749577.1| error-prone DNA polymerase [Corynebacterium efficiens YS-314]
 gi|259165759|gb|EEW50313.1| error-prone DNA polymerase [Corynebacterium efficiens YS-314]
          Length = 1052

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 294/1036 (28%), Positives = 453/1036 (43%), Gaps = 134/1036 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L   SSY+ L GA     ++D+       A+A+ D + L+ A+ F++ A   G+  +
Sbjct: 56   FVELHATSSYNFLAGASDPGEMVDRAHELGLSALALVDRDGLYGAVRFAEAAAEVGLATV 115

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +          +G         + +L    EGY+RL  L++   +    K SV 
Sbjct: 116  FGAELSL---------REG--------VLTVLCRGVEGYRRLSHLITGAAMSAGEKGSVD 158

Query: 131  I-CLSWLQEIGTEGLIMLTGGS-SGPIDRAF--FFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               L  + E G    ++L G      ID     F   + V E         F  R+    
Sbjct: 159  YPLLPQVAEQGAGHWVVLAGVEWQKKIDHLIECFGRDNVVLE---------FPARMLPED 209

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE-AHDVLMAVAHSTVVSQKDR 245
              H    R  +++         +P  AT + + L+      A    +A A S++      
Sbjct: 210  TDHHDILRSIQTRTGLRGILSTMPTAATRDHVRLAGAKCALALRANLAEAESSLHPMGGT 269

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---------- 295
                   +L++   +   +    + L  TVEIA  C+F   + AP LPR+          
Sbjct: 270  -------WLRSGGALARAYPQCGDLLATTVEIASGCAFTFDLVAPELPRWDTPDGHTEMT 322

Query: 296  -----IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +E   D   +    E+R +A                      R ++  EL VI +
Sbjct: 323  WLTHLVESRFDRRYRSRPAEVRERA----------------------RAQIRHELGVIEQ 360

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            + F GYFLIV D +Q+     I +  GRGS A S   + L IT+ +P+   LLFERFL+ 
Sbjct: 361  LGFPGYFLIVDDLVQFCHNATI-LCQGRGSAANSAVCFVLGITNAEPITAGLLFERFLSR 419

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            DR   PD DID    RR+EVI+YV  +YG +  AQ+    + + K ALRD  RAL  P  
Sbjct: 420  DRDGPPDIDIDIESGRREEVIQYVYTRYGRDNAAQVANVITYRTKGALRDAARALGYPQG 479

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
             VD   +     PA                          ++E++ +L+G  RH   H+ 
Sbjct: 480  TVDAWSRGASEPPAD-------------------------VVELAGQLKGQPRHLGIHSG 514

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VI DRP++ +VP          V Q++      AGL+KFD LGL  L  L   +D +A
Sbjct: 515  GMVICDRPIADVVPTEWARMEGRSVVQWDKDDCAAAGLVKFDLLGLGMLEALHHMMDLVA 574

Query: 591  -QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
              RG+ V+L  +   D   Y +L     +G+FQ+ES      L  ++P    D++  V+L
Sbjct: 575  HHRGITVNLWELDLADAGVYDMLCRADAVGVFQVESRAQMSTLPRLKPRTFFDLVVEVAL 634

Query: 650  YRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             RPGPI    V  Y  R++G+E +   HP+++  L +T G+ ++QEQ+MQIA   +G++ 
Sbjct: 635  IRPGPIQGGSVHPYLRRRSGEEAVTYDHPVLEKSLGKTLGIPLFQEQIMQIAVDAAGFTG 694

Query: 708  SEADVLRRAMG-KKIKEEMDKQKERFISG-ASKNGISKTIAVNIFELLAKFADYGFNKSH 765
             EAD LRRAMG K+    M   + RF  G A  +GI    A  ++  +  FA YGF +SH
Sbjct: 695  GEADALRRAMGSKRSPTRMAALRSRFYQGLADTHGIIGDTADKLWNKMVAFAAYGFPESH 754

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            + ++A + Y +AW K HYP EF A  +  +       +    DAR+  ++I+P S+N   
Sbjct: 755  SQSFATLVYFSAWFKHHYPAEFCAGLLRAQPMGFYSPQSLIADARRHGVEILPISINESG 814

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            V     D  +   L  +KG+G   AR I E +   P+ S+ D   R D   L    +E+L
Sbjct: 815  VQADAPDGHLRLGLDLVKGLGEEAARRIAEHA---PYTSIPDLSRRAD---LGVAHIEAL 868

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGALDC G  R + L         A      R      I A E          E  + 
Sbjct: 869  ARAGALDCLGVGRREALWQ-------AGIAATERPGMLPGISAIEAPALPGMSAFELMAT 921

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004
              ++          G      P+ + +  L  +G+   +  +  +  G  +R+A +V  +
Sbjct: 922  SIAAT---------GVTHDAQPMALLRAHLDALGVVPADRLLTDVADGTRVRIAGVVTHR 972

Query: 1005 QQKKTRKGSRIGWVTF 1020
            Q+ +T  G     VTF
Sbjct: 973  QRPQTASG-----VTF 983


>gi|167033740|ref|YP_001668971.1| error-prone DNA polymerase [Pseudomonas putida GB-1]
 gi|166860228|gb|ABY98635.1| DNA polymerase III, alpha subunit [Pseudomonas putida GB-1]
          Length = 1026

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 295/1028 (28%), Positives = 472/1028 (45%), Gaps = 89/1028 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  L   S++S   GA S + +  +       A+AITD   L   +   Q A A  +
Sbjct: 3    TPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKAHQL 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G   ++ + D               P +VLLV    GYQ L  L++R     + K 
Sbjct: 63   RLIVGS--EVQLHDG--------------PKLVLLVENLTGYQNLCALITRARRRAE-KG 105

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              ++    LQ+   +GL+            A +     V +      + +F +RL++ + 
Sbjct: 106  EYQLFRDDLQQ-HHQGLL------------ALWVADDSVDKATGEWLRSVFAERLWLAVH 152

Query: 188  RHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
             HRG D     Q +Q LA    +  VA  +            D + A+     V++  R 
Sbjct: 153  LHRGCDDAMRLQRLQALAADVGVRAVACGDVHMHVRGRRALQDCMTAIRQHCQVNEAGRF 212

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +L++++++  ++      L  T+ IA+RC F L       P      C+ + +
Sbjct: 213  LFANGERHLRSQAQLGELYP--ANLLAETLTIAQRCQFDLSELKYQYP------CELVPE 264

Query: 306  EE--ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                 + LR+    GL +R   G       ++  R  L  EL +I  + +  YFL V D 
Sbjct: 265  GHTPASWLRDLCEQGLPLRWPNGP------SEKVRDVLAKELALIEELGYESYFLTVHDI 318

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +A+   I +  GRGS A SV  + L IT++DP+   LLFERFL+ +R   PD D+DF 
Sbjct: 319  VAFARSQRI-LCQGRGSAANSVVCFVLGITELDPMEHHLLFERFLSRERNEPPDIDVDFE 377

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR+EVI+YV  +YG  R A      +  A  A+RDV R L +P  QVD L K      
Sbjct: 378  HDRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARVLGLPADQVDALAKCCGR-- 435

Query: 484  AHPVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                    I D+ R  EA      PS+ R+L ++ +L G  RH S H  G VI  +PL Q
Sbjct: 436  ----WSDRIPDEQRLAEAGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQPLDQ 491

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            LVP+     +   V Q++   ++  GL+K D L L  L+ L++  D L + RG ++ L+ 
Sbjct: 492  LVPVENAAMAQRTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLLQRHRGRQLTLAT 551

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            IP +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 552  IPSEDPATYAMISRAETMGVFQIESRAQMAMLPRLRPTTFYDLVIEVAIVRPGPIQGDMV 611

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R+  +E +      +  + + T GV ++QEQVM++A + + Y+  EAD LRR+M 
Sbjct: 612  HPYLRRRLKQEPVTYPSAQLKAVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRRSMA 671

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K    ++  +ER + G  +NG     A  IFE +  F  YGF +SHAA++A++ Y ++
Sbjct: 672  AWKRHGGLEPHRERLVQGMLRNGYELAFAQRIFEQIKGFGSYGFPESHAASFALLCYASS 731

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GD 832
            W+K H P  F  A +           +  Q+AR+  I++ P  V     D  +     G 
Sbjct: 732  WLKCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSEWDCTLEPDEHGT 791

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              I   L  ++G+    AR + +A A +P+  +ED C R     L+ R    L  AGAL 
Sbjct: 792  LAIRMGLRLVRGLAEADARRLQQARAQRPWRDVEDLCLRAG---LDSRARARLADAGALR 848

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                 R Q           A+W +         +FA  +      + L   +V+   V  
Sbjct: 849  ALASDRHQ-----------ARW-QVAAVQPQLPLFADVQALPEVAVALPAPTVDEDLV-- 894

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              + + LG     HPL + +  LR +G +   E      G+ I +A +VV +Q+ +T  G
Sbjct: 895  -ADYQTLGTTLGPHPLALLRSRLRALGCRSSSELQGVEHGDTIAVAGLVVGRQRPQTASG 953

Query: 1013 SRIGWVTF 1020
                 VTF
Sbjct: 954  -----VTF 956


>gi|294010399|ref|YP_003543859.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S]
 gi|292673729|dbj|BAI95247.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S]
          Length = 1090

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 307/1030 (29%), Positives = 473/1030 (45%), Gaps = 89/1030 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  LQV S +S L GA S   +  + A     A+A+ D N+L   +   Q A   G+
Sbjct: 3    APRYAELQVTSHFSFLRGASSCEELFSQAALAGIEALAVVDRNSLAGIVRAHQAAKTTGV 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+GC+LD  + D   M       +PT  S          Y RL  L+S   L  Q   
Sbjct: 63   RLIVGCRLD--LVDGASMLV-----YPTDRS---------AYSRLCRLLS---LGKQRAG 103

Query: 128  SVRICLSW--LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
              +  L W  L   G EGLI++        + A           RL   +  FGDR Y+ 
Sbjct: 104  KAKCHLEWPDLMAYG-EGLIVVLVPDQADAECAL----------RLRRLRDAFGDRAYLA 152

Query: 186  LQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQK 243
            L  R R  D+ R  ++  LA    +P V TN+ LF         DV+  + H+ T+ +  
Sbjct: 153  LTLRRRPNDQLRIHELSNLATQMRVPTVVTNDVLFHEPARRVLQDVVTCIRHNVTIDALG 212

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR     D Y+K   EM  +F+  PEAL  T++IA RC F L   A   P    +E DD 
Sbjct: 213  DRRERHADRYIKPPEEMHRLFARYPEALARTLQIADRCRFNLDELAYQYP----EERDDP 268

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                +  L      G   R  +G       A      L  EL +I ++ ++ YFL V   
Sbjct: 269  ALTPQETLAKLTWEGAAQRYPEGVPDSVIAA------LRHELRLIEKLGYAPYFLTVNAI 322

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+  +I +  GRGS A S   Y L IT IDP R  LLFERF++ +R   PD D+DF 
Sbjct: 323  VRFARSKDI-LCQGRGSAANSAVCYVLGITSIDPGRNDLLFERFVSEERREPPDIDVDFE 381

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+ V+++V + YG +  A   T    + K ALRDVG+AL +P   +  L   +    
Sbjct: 382  HERREIVMQWVFDTYGRDHAALCSTVIRYRTKGALRDVGKALGLPEDLIGTLSSQV---- 437

Query: 484  AHPVSLQAIADDSRFREA---RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                +      + R  EA    LAD  +   L+++++L G  RH S H  G V+    L 
Sbjct: 438  ---WAWSEEGVEQRHVEALNLNLADRRLRLTLDLARQLMGAPRHLSQHPGGFVLTHDRLD 494

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+      D  V +++   I+    +K D L L  LT ++K LD LA+ +GV +DL+
Sbjct: 495  DLVPIEPAAMKDRQVIEWDKDDIDALKFMKVDVLALGMLTCMKKGLDLLAEHKGVNLDLA 554

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DN 657
             IP +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D 
Sbjct: 555  SIPAEDPRTYAMIRKADTLGTFQIESRAQMSMLPRLKPRTYYDLVVQVAIVRPGPIQGDM 614

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +  Y  R+ G E +    P ++ +L +T GV ++QEQ M++A   +G++  EAD+LR++M
Sbjct: 615  VHPYLRRREGLEPVHYPKPELEKVLGKTLGVPLFQEQAMRVAIECAGFTPGEADMLRKSM 674

Query: 718  GK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
               K    +   +++ I+G   NG  +  A   F+ L  F  YGF +SHAA++A+I+Y +
Sbjct: 675  ATFKFTGGVSHFRDKLIAGMVANGYEQAFAEQTFKQLEGFGSYGFPESHAASFALIAYAS 734

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVDFKVGDN 833
            AW+K  +P  F AA +  +        +  +DA +  + + P   N     C      D 
Sbjct: 735  AWLKCWHPDVFCAALLNSQPMGFYAPAQIVRDAIEHGVDVRPVCANASRWDCTLEPTSDE 794

Query: 834  RIY---YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
              Y     L  +KG+  T    I+ A AD+P+ S++D   R  +         +LV    
Sbjct: 795  SRYAVRLGLRMVKGLANTHGAAIVSARADQPYTSIDDLWRRAGAPS------AALVQLAE 848

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--------TLEK 942
             D F         +L   ++ A W  K   ++   +FA      +  I         L  
Sbjct: 849  ADAF-------RPALGLARREALWAIKALRDEPLPLFAAASAREAGAIPEIDEPAVALRP 901

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             +     V  E+   V G     HPL   +  L++  I    E++A   G  +  A +V+
Sbjct: 902  MTAGGEVV--EDYGHV-GLTLRTHPLSFLREDLQRRRIVTCAEAMAARDGRWVEAAGIVL 958

Query: 1003 SKQQKKTRKG 1012
             +Q+  + KG
Sbjct: 959  VRQRPGSAKG 968


>gi|25027188|ref|NP_737242.1| error-prone DNA polymerase [Corynebacterium efficiens YS-314]
 gi|71151823|sp|Q8FRX6|DNAE2_COREF RecName: Full=Error-prone DNA polymerase
 gi|23492469|dbj|BAC17442.1| putative DNA polymerase III alpha subunit [Corynebacterium efficiens
            YS-314]
          Length = 1073

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 294/1036 (28%), Positives = 453/1036 (43%), Gaps = 134/1036 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L   SSY+ L GA     ++D+       A+A+ D + L+ A+ F++ A   G+  +
Sbjct: 77   FVELHATSSYNFLAGASDPGEMVDRAHELGLSALALVDRDGLYGAVRFAEAAAEVGLATV 136

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +          +G         + +L    EGY+RL  L++   +    K SV 
Sbjct: 137  FGAELSL---------REG--------VLTVLCRGVEGYRRLSHLITGAAMSAGEKGSVD 179

Query: 131  I-CLSWLQEIGTEGLIMLTGGS-SGPIDRAF--FFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               L  + E G    ++L G      ID     F   + V E         F  R+    
Sbjct: 180  YPLLPQVAEQGAGHWVVLAGVEWQKKIDHLIECFGRDNVVLE---------FPARMLPED 230

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE-AHDVLMAVAHSTVVSQKDR 245
              H    R  +++         +P  AT + + L+      A    +A A S++      
Sbjct: 231  TDHHDILRSIQTRTGLRGILSTMPTAATRDHVRLAGAKCALALRANLAEAESSLHPMGGT 290

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---------- 295
                   +L++   +   +    + L  TVEIA  C+F   + AP LPR+          
Sbjct: 291  -------WLRSGGALARAYPQCGDLLATTVEIASGCAFTFDLVAPELPRWDTPDGHTEMT 343

Query: 296  -----IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +E   D   +    E+R +A                      R ++  EL VI +
Sbjct: 344  WLTHLVESRFDRRYRSRPAEVRERA----------------------RAQIRHELGVIEQ 381

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            + F GYFLIV D +Q+     I +  GRGS A S   + L IT+ +P+   LLFERFL+ 
Sbjct: 382  LGFPGYFLIVDDLVQFCHNATI-LCQGRGSAANSAVCFVLGITNAEPITAGLLFERFLSR 440

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            DR   PD DID    RR+EVI+YV  +YG +  AQ+    + + K ALRD  RAL  P  
Sbjct: 441  DRDGPPDIDIDIESGRREEVIQYVYTRYGRDNAAQVANVITYRTKGALRDAARALGYPQG 500

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
             VD   +     PA                          ++E++ +L+G  RH   H+ 
Sbjct: 501  TVDAWSRGASEPPAD-------------------------VVELAGQLKGQPRHLGIHSG 535

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VI DRP++ +VP          V Q++      AGL+KFD LGL  L  L   +D +A
Sbjct: 536  GMVICDRPIADVVPTEWARMEGRSVVQWDKDDCAAAGLVKFDLLGLGMLEALHHMMDLVA 595

Query: 591  -QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
              RG+ V+L  +   D   Y +L     +G+FQ+ES      L  ++P    D++  V+L
Sbjct: 596  HHRGITVNLWELDLADAGVYDMLCRADAVGVFQVESRAQMSTLPRLKPRTFFDLVVEVAL 655

Query: 650  YRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             RPGPI    V  Y  R++G+E +   HP+++  L +T G+ ++QEQ+MQIA   +G++ 
Sbjct: 656  IRPGPIQGGSVHPYLRRRSGEEAVTYDHPVLEKSLGKTLGIPLFQEQIMQIAVDAAGFTG 715

Query: 708  SEADVLRRAMG-KKIKEEMDKQKERFISG-ASKNGISKTIAVNIFELLAKFADYGFNKSH 765
             EAD LRRAMG K+    M   + RF  G A  +GI    A  ++  +  FA YGF +SH
Sbjct: 716  GEADALRRAMGSKRSPTRMAALRSRFYQGLADTHGIIGDTADKLWNKMVAFAAYGFPESH 775

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            + ++A + Y +AW K HYP EF A  +  +       +    DAR+  ++I+P S+N   
Sbjct: 776  SQSFATLVYFSAWFKHHYPAEFCAGLLRAQPMGFYSPQSLIADARRHGVEILPISINESG 835

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            V     D  +   L  +KG+G   AR I E +   P+ S+ D   R D   L    +E+L
Sbjct: 836  VQADAPDGHLRLGLDLVKGLGEEAARRIAEHA---PYTSIPDLSRRAD---LGVAHIEAL 889

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGALDC G  R + L         A      R      I A E          E  + 
Sbjct: 890  ARAGALDCLGVGRREALWQ-------AGIAATERPGMLPGISAIEAPALPGMSAFELMAT 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004
              ++          G      P+ + +  L  +G+   +  +  +  G  +R+A +V  +
Sbjct: 943  SIAAT---------GVTHDAQPMALLRAHLDALGVVPADRLLTDVADGTRVRIAGVVTHR 993

Query: 1005 QQKKTRKGSRIGWVTF 1020
            Q+ +T  G     VTF
Sbjct: 994  QRPQTASG-----VTF 1004


>gi|116626077|ref|YP_828233.1| DNA polymerase III subunit alpha [Candidatus Solibacter usitatus
            Ellin6076]
 gi|116229239|gb|ABJ87948.1| DNA polymerase III, alpha subunit [Candidatus Solibacter usitatus
            Ellin6076]
          Length = 1014

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 290/1020 (28%), Positives = 486/1020 (47%), Gaps = 94/1020 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +V L   S++S LEG+     +    A    PA+A+ D N ++ +  F   A  AG++
Sbjct: 3    PPYVELHARSAFSFLEGSCLPEELAGACANFGMPAMALLDRNGVYGSPRFHLAAKKAGVR 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
              IG ++          TN    P        LL ++ EGYQ L  LV+RM L    K  
Sbjct: 63   AHIGSEITC--------TNGLTYP--------LLAASREGYQNLCRLVTRMKL-RAAKGE 105

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
                L  L E  + GL+ +T                   ++RLL   +++G   LY  LQ
Sbjct: 106  GAATLEELAEF-SRGLLCITPHP----------------DQRLL---EIYGRHNLYAELQ 145

Query: 188  RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH   +    +Q  V+LA    +P++ATN+  +      E  DV   + +   ++   R 
Sbjct: 146  RHCNREEEAGNQRTVELARRLGIPIIATNHPAYAIPAQRELLDVFTCIRNKVTLTTAGRL 205

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + ++K   EM  +F+DLPEA+ NT+EI+ R  F L       PR+   + +    
Sbjct: 206  LERNNERHVKTPDEMARLFADLPEAIANTLEISSRLDFTLADLGYEFPRYPVPDGET--- 262

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             + + LR  A  G   R                  ++ EL +I R++ +GYFLIV D ++
Sbjct: 263  -QISFLRKLADEGARRRYRPYYERARLQ-------VERELTMIERLRLAGYFLIVWDIVR 314

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF-CQ 424
            + K+++I +  GRGS A S   YAL IT +DP+   LLFERFL+ +R   PD D+D    
Sbjct: 315  FCKEHDI-LAQGRGSAANSAVCYALEITAVDPVGMDLLFERFLSEERGEWPDIDLDLPSG 373

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP---- 480
            D+R++ I+YV  ++G    A      + + ++A R+VG+AL    S ++ L KL+     
Sbjct: 374  DKREQAIQYVYQRFGQLGAAMTANVITYRGRSAAREVGKALGFEISTLENLTKLVRAWEW 433

Query: 481  NDPAHPVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
             DP           D +FREA   +A+P V +  E+ Q  + L RH   H+ G+V+    
Sbjct: 434  KDPKD-------TTDRQFREAGFDIANPRVRKFFELYQMAQDLPRHLGQHSGGMVVCQGA 486

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            L  +VP+         V Q++ +     G++K D LGL  + +++  L         VD+
Sbjct: 487  LDSVVPLEPASMPGRVVVQWDKEDCADLGIVKVDLLGLGMMAVIEDCLKMCPD----VDI 542

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD + Y  L    T+G+FQ+ES      L  M+P    D++  V++ RPGPI   
Sbjct: 543  AHLPQDDPKVYGALQRADTIGMFQVESRAQMSCLPRMKPVRFYDVVVQVAIIRPGPIVGK 602

Query: 659  VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V  Y NR+ G+E +  +HP ++P+L+ T GV ++QEQ++++A + +G+S  EA+ LRRA
Sbjct: 603  MVHPYLNRRQGREVVDCLHPSLEPVLRRTLGVPLFQEQLLRMAMIAAGFSGGEAEELRRA 662

Query: 717  MG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            MG K+ ++ M + + +  +G ++ GI+      I   +  FA YGF +SHAA++A+++Y 
Sbjct: 663  MGFKRSEKRMQEIEIKLRAGMTRKGITGESQEAIVRSITSFALYGFPESHAASFALLAYA 722

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-TPCVDFKVGDNR 834
            +AW+K H   EF  A +  +           +DA++  ++++P  V  +  +   V D  
Sbjct: 723  SAWLKCHRLAEFTCAMLNNQPMGFYSPAILIKDAQRHGLRVLPVDVTQSEWLCTVVSDQC 782

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +   L   +G+     + I+ A A++PF S++D   RV  ++L +  L  L   GAL+  
Sbjct: 783  MRLGLRYARGLREQAGQAILRARAERPFTSVDDLAVRV--RELRKDELNRLAEIGALNPL 840

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRF 952
                          ++ A W  +        + AH  E G  S  + +      +   R 
Sbjct: 841  EKQH----------RRDALWQSQRAILPVGPLLAHLEETGEPSPLVPM------DHEERL 884

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              + R  G     HP+   +  +  +G+           G+ +R+A  V+ +Q+  T KG
Sbjct: 885  WADYRGTGLTVGKHPMAWRRIEMNALGVVPAMHLARVRDGSVVRIAGSVIVRQRPGTAKG 944


>gi|154244758|ref|YP_001415716.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2]
 gi|154158843|gb|ABS66059.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2]
          Length = 1059

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 304/1031 (29%), Positives = 474/1031 (45%), Gaps = 91/1031 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P++  LQV S +S L GA S   +    AA    A+A+TD N L   +   + A  AG+
Sbjct: 3    APAYAELQVTSHFSFLRGASSAEELFATAAAMGIGALAVTDRNTLAGIVRAHEAAKEAGV 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + IIGC+LD+       +       +PT             Y RL  L+S    L +G+ 
Sbjct: 63   RLIIGCRLDL-------VCGMSVLVYPT---------DWAAYSRLCRLLS----LGKGRA 102

Query: 128  SVRIC-LSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                C L W   +   EGLI++               + +    RL   +  FGDR Y+ 
Sbjct: 103  GKARCHLEWDDLVAYGEGLIVVLAPDL----------ADETCGLRLRRLRDAFGDRAYLG 152

Query: 186  LQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQK 243
            L  R R  D+ R  ++  LA    +P V TN+ LF         DV+ A+ H+ TV +  
Sbjct: 153  LTLRRRPNDQMRLWELSTLAAGLGVPTVVTNDVLFHEPGRRILQDVVTAIRHNVTVDALG 212

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R     D YLK   EM  +F+  PEAL  T EIA RC F L       P    +E DD 
Sbjct: 213  IRRERHADRYLKAPGEMHRLFARWPEALARTREIADRCRFSLDELRYQYP----EERDDP 268

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                +  L      G   R  +G        ++    L  EL +I ++ ++ YFL V   
Sbjct: 269  ALSPQETLERLTWEGAASRYPEGV------PEEVTAALKHELALIGKLDYAPYFLTVNSI 322

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+   I +  GRGS A S   Y L IT IDP R  LLFERF++ +R   PD D+DF 
Sbjct: 323  VRFARSRGI-LRQGRGSAANSAVCYVLGITAIDPGRNDLLFERFVSEERREPPDIDVDFE 381

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EVI++V   YG ER A   T    ++K ALRDVG+A+ +P   +  L   +    
Sbjct: 382  HERREEVIQWVYEHYGRERAALTATVIRYRSKGALRDVGKAMGLPEDLIQTLSGQLWGWS 441

Query: 484  AHPVSLQAIAD---DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
               V+ Q + D   +   R  RL        LE++ +L G  RH S H  G V+    L 
Sbjct: 442  EAGVTEQQLRDLNLNPEDRRLRLT-------LELAAQLRGAPRHLSQHPGGFVLTHDRLD 494

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             LVP+         + +++   I+    +K D L L  L+ +++ LD LA+ + +++DL+
Sbjct: 495  DLVPIEPAAMEGRQIIEWDKDDIDALRFMKVDVLALGMLSCMRRGLDLLAEHKDIRLDLA 554

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DN 657
             IP +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D 
Sbjct: 555  SIPAEDPRTYAMIRKADTLGTFQIESRAQMSMLPRLKPRTYYDLVVQVAIVRPGPIQGDM 614

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +  Y  R+ G E++    P ++ +L +T GV ++QEQ M++A   +G++  EAD+LR++M
Sbjct: 615  VHPYLRRREGLEEVDYPRPELEKVLGKTLGVPLFQEQAMRVAIECAGFTAGEADLLRKSM 674

Query: 718  GK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
               K    + K ++R ISG    G  +  A   F+ L  F  YGF +SHAA++A+I+Y +
Sbjct: 675  ATFKHTGGVSKFRDRLISGMIARGYEEEFAARTFQQLEGFGSYGFPESHAASFALIAYAS 734

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVDFKVGDN 833
            AW+K  +P  F AA +  +        +  +DAR+  +++ P  +N     C     GD 
Sbjct: 735  AWLKCWHPDVFCAALLNAQPMGFYAPAQIVRDAREHGVEVRPVCINASRWDCTLEPTGDE 794

Query: 834  R---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA-G 889
                +   L  +KG+    A  ++ A  D+ F S++D   R     +    L+ +  A G
Sbjct: 795  SRFAVRLGLRMVKGLANAHAAAVVAARGDETFTSVDDLWRRA---GVPVAALDQIAAADG 851

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSD----KITLE 941
                FG +R           + AQW  K   ++   +FA     E  T  +     I L 
Sbjct: 852  FRPAFGLAR-----------REAQWAIKGLRDEELPLFAAASEREGQTVPELDEPAIALR 900

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                    V    +   +G     HP+   +  L +  I    E++A      +  A +V
Sbjct: 901  AMPAGREVV---EDYGHIGLSLRRHPVSFLREDLARRRIVSCAEAMAAPDQRWLEAAGIV 957

Query: 1002 VSKQQKKTRKG 1012
            + +Q+  +  G
Sbjct: 958  LVRQRPGSANG 968


>gi|296115453|ref|ZP_06834087.1| DNA polymerase III, alpha subunit [Gluconacetobacter hansenii ATCC
            23769]
 gi|295978026|gb|EFG84770.1| DNA polymerase III, alpha subunit [Gluconacetobacter hansenii ATCC
            23769]
          Length = 1058

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 292/1028 (28%), Positives = 480/1028 (46%), Gaps = 92/1028 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  LQV + +S L GA S   + ++  A    A++I D N+L   ++    A A G++
Sbjct: 6    PCYAELQVTTYFSFLRGASSPIELFEQAKALGIEALSICDRNSLAGMVQAYGAAKATGVR 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++GC++D+                   P++++  +    Y RL  L++ +     GK  
Sbjct: 66   LVVGCRIDL----------------ADFPAVLVYPTDRAAYGRLCRLLT-IGKARAGKGK 108

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +    L   G EGLI++    +          +       L   K  F DR Y+ L  
Sbjct: 109  CHLLWEDLVAWG-EGLIIVMVPDT----------ADDACALHLRKLKDAFADRAYMALTL 157

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D+ R  ++  LA    +P V TN+ LF + +     DV+  + H+T + +    R
Sbjct: 158  LRRPNDQMRLYELANLAQQAHVPTVVTNDVLFHTHDRRILQDVVTCIRHNTTIDEAGFVR 217

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                D YLK   EM  +FS  PEA+  TV+I  RC F L               DD+  +
Sbjct: 218  ERHADRYLKPPQEMARLFSRYPEAVARTVQIVERCHFSL---------------DDLAYQ 262

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDY--------RQRLDFELNVIARMKFSGYFL 358
              +E+   +V G   + A  A+     A+ Y        R+ L+ EL +I RM ++ YFL
Sbjct: 263  YPDEV---SVPGQTPQQALEALTWEAAARTYPEGIPDEVRKSLNHELGLIGRMAYAPYFL 319

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
             V   +++A+  +I +  GRGS A S   Y L IT IDP R SLLFERF++ +R   PD 
Sbjct: 320  TVNSIVRYARSQDI-LCQGRGSAANSAVCYVLGITAIDPARNSLLFERFVSEERGEPPDI 378

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF   RR++VI++V   YG +R A        +AK ALRDVG+ + +P   +  L   
Sbjct: 379  DVDFEHARREQVIQWVYEHYGRDRAALTAVVIRYRAKGALRDVGKVMGLPEDLIRTLSGQ 438

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            I +     +   A+ D        L+D  +   L++++ L G  RH S H  G V+    
Sbjct: 439  I-HGWGRTLDDDALTDSG----IDLSDRRIRLTLDLARCLIGTPRHLSQHPGGFVLTHDR 493

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L +LVP+         + +++   I+    +K D L L  LT ++K LD LA+ +G    
Sbjct: 494  LDELVPIEPASMEARQIIEWDKDDIDVLKFMKVDILALGMLTCMKKGLDLLAEHKGQHFT 553

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            L  +P +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 554  LQTLPAEDPRTYAMIRKADTIGVFQIESRAQMSMLPRLKPRVFYDLVIEVAIVRPGPIQG 613

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D +  Y  R+ G E      P ++ +LK+T G+ ++QEQ MQ+A + +G++ +EAD LRR
Sbjct: 614  DMVHPYLRRREGIEPEDYPTPELEKVLKKTLGIPLFQEQAMQVAMICAGFTAAEADQLRR 673

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AM   K    + + + R I+G   NG  +  A  I+  L  F  YGF +SHAA++A+++Y
Sbjct: 674  AMATFKNTGTVSQFQTRLINGMRANGYDEEFAERIYLQLEGFGSYGFPESHAASFAILAY 733

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---- 830
             ++WMK  +P  FLA+ +  +        +  +DAR+  ++I P  VN    D  +    
Sbjct: 734  SSSWMKCTHPDVFLASLLNSQPMGFYAPAQLVRDAREHGVEIRPVCVNASRWDSTLEGPE 793

Query: 831  ---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               G   +   ++ +KG+    A  I+ A   +PF S++D   R   K        +L  
Sbjct: 794  SPNGMFAVRLGMSLVKGLANDDAARIVAARDSRPFTSIDDLWRRAGVKA------AALTH 847

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---ITLEKFS 944
                D F         SL   ++ A W  +   ++   +FA  + T   +   + L+   
Sbjct: 848  LAEADAF-------RPSLGLARREALWAIRVLRDEPLPLFAAAQITREAEEPDVLLQPMR 900

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 VR  N    LG     HPL   +  L++  I    +++A   G  + +A +V+ +
Sbjct: 901  DGAEVVRDYNR---LGLTLRDHPLTFLREDLQERDIMSCRQALAAKDGKRLTVAGLVLVR 957

Query: 1005 QQKKTRKG 1012
            Q+  + +G
Sbjct: 958  QRPGSAEG 965


>gi|148377433|ref|YP_001256309.1| DNA polymerase III DnaE [Mycoplasma agalactiae PG2]
 gi|148291479|emb|CAL58864.1| DNA polymerase III, alpha subunit [Mycoplasma agalactiae PG2]
          Length = 977

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 280/907 (30%), Positives = 451/907 (49%), Gaps = 117/907 (12%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+ L   + YS LE  + + +++     + + A+ ++D NN+F+  EF ++  A  I+PI
Sbjct: 4   FIDLYNTTEYSFLESLIKVKDLVRLSKENGKRAVVLSDHNNMFALGEFLKQCAAYEIKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG  LD++                     +LL    EG++ +  L+     L + ++ ++
Sbjct: 64  IGVDLDVEES-----------------RFILLAKNYEGFKLINSLI-----LKKSREEIK 101

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                L +I ++ L ++   S+G                            LY   + H+
Sbjct: 102 -----LSDIISDNLFIIDHPSNG----------------------------LYAKNEHHK 128

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSE------EDYEAHDVLMAVAHSTVVSQKD 244
             D           Y    P  +  NS+++ E      ED E  ++L+ + ++       
Sbjct: 129 LSDNKN--------YYISSPDSSIPNSIYVKENKLIDVEDNETLNILLKLGNN------- 173

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                     K  +   S F D         +   R +FI+       P+   K     +
Sbjct: 174 ----------KEANYNFSYFEDYT----TDSDFLARINFIVDNCNVTFPKKELKLASFCE 219

Query: 305 KEEEN-ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            EE+N EL    +  ++  LA+   A   +      R+++E +VI ++ F  YFLI++D 
Sbjct: 220 SEEKNYEL---FIEKIKQGLAKHKKALLPYKTAVNDRINYECSVIKKLVFINYFLIISDM 276

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           I++A  N I +GPGRGS AGS+ +Y L IT I+PL+++LLFERFLN D++S PD DID  
Sbjct: 277 IEYADNNGISIGPGRGSAAGSLISYLLGITKINPLKYNLLFERFLNIDKVSWPDIDIDIQ 336

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            DRRDE+  Y+QNKYG  +VA I TF ++  K A+RDVGR L +P S V+R+ K I    
Sbjct: 337 DDRRDEIFAYLQNKYGKSKVAVISTFQTMGTKQAIRDVGRMLDIPLSDVNRISKSINAFA 396

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +    +  A +  F +   +    ++ +    KL+GL R    HAAG++I D+ L++ V
Sbjct: 397 NYSSIEEEFAKNLTFNKEVSSLKDYEKFINHVSKLQGLPRQYGIHAAGLIISDKDLNEYV 456

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ------KSLDFLAQRGVKVD 597
           P++ +  S L V Q  M+++E  GL+K D LGLKTLT ++        L    +   + D
Sbjct: 457 PVFENAYSFLQV-QVPMEFVEDFGLLKIDLLGLKTLTEIKHIEKRISKLKLFDELVYEND 515

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           L L    D    +LL    T G+FQ+ESSGM+  ++ +     ED+ A++SLYRPGP + 
Sbjct: 516 LEL---QDPMAINLLNNGNTEGLFQIESSGMKSTIKKVGIQSFEDLFAIISLYRPGPKEY 572

Query: 658 IVVY-NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
           I  Y NNRKN K  I  I P+ D ++  T G+IIYQEQ+M+IAQ ++  S ++AD+LRRA
Sbjct: 573 IKDYANNRKNPK-LIEKIDPVYDEIVAPTYGIIIYQEQIMEIAQAVAKMSFAQADLLRRA 631

Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
           + KK + E+ K +  F  G  +N  S      I++ + KFA YGFNKSHA +YA ++ + 
Sbjct: 632 ISKKNEAELHKYRNTFFEGGLRNNFSIESLTKIYDKIEKFAQYGFNKSHAVSYAYLTMKM 691

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV----NTPCVDFKVGD 832
           A+ K  YP  + +A ++    +  KI  F  + +  N  +  PS+    N+  VD   GD
Sbjct: 692 AYYKARYPQVYFSALISNSYGDQNKIASFVNELKNMNFSVYSPSIIHFTNSAIVD--NGD 749

Query: 833 NRIYYSLAAIKGVGTTTARHI-MEASADKPFD--SLEDFCSRVDSKKLNRRVLESLVFAG 889
             IY     IKG+G  + + I ++   +  +   SL +   R+    +   ++ +L+ A 
Sbjct: 750 --IYLPFNMIKGLGAESIKKIALDIKENGQYKDLSLFEILLRLRFAGIKNSMISTLIRAN 807

Query: 890 ALDCFGY 896
               FGY
Sbjct: 808 VFRSFGY 814


>gi|146282691|ref|YP_001172844.1| error-prone DNA polymerase [Pseudomonas stutzeri A1501]
 gi|145570896|gb|ABP80002.1| DNA polymerase III, alpha subunit, putative [Pseudomonas stutzeri
            A1501]
          Length = 1065

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 296/1024 (28%), Positives = 468/1024 (45%), Gaps = 97/1024 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + ++       A+AITD  +L   +   Q +   G+  I
Sbjct: 44   YAELHCLSNFSFQRGASSARELFERAKRQGYDALAITDECSLAGIVRAWQASKDTGLPLI 103

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGK-QS 128
            IG ++ I+                  P +VLLV    GYQ L +L++R     ++G+ Q+
Sbjct: 104  IGSEVQIE----------------GGPKLVLLVENLTGYQALCQLITRARRRAEKGRYQA 147

Query: 129  VRICLSWLQEIGTEGL--IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            +R  LS   E   EGL  I L G +    D  +                  F +RL++ +
Sbjct: 148  LREDLS---EGSLEGLLAIWLPGHAGADTDGRWLLER--------------FRERLWLGI 190

Query: 187  QRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            + HRG D   +  Q +  A    +P VA  +    +       D + A+ H   V++   
Sbjct: 191  ELHRGPDDALQLRQSLTQASRLGIPAVACGDVHMHARGRRALQDCMTAIRHHLPVAEAG- 249

Query: 246  PRVTP--DHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFIL---QVHAPILPRFIEKE 299
              + P  + +L++R E+  ++   P AL   T+ I++RC F L   + H P        E
Sbjct: 250  CHLFPNGERHLRSREELAQLY---PAALLSETLRISQRCHFQLDQLKYHYP-------HE 299

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                  +  + LR     G   R   G   K       R +++ EL +IA + +  YFL 
Sbjct: 300  LVPPGHDTTSWLRKLVEDGARWRWPDGIPEKA------RAQIEHELELIADLHYESYFLT 353

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++A++  I +  GRGS A S   + L IT++DP+R  LLFERFL+ +R   PD D
Sbjct: 354  VHDIVRFARERGI-LCQGRGSAANSSVCFVLGITELDPVRSKLLFERFLSRERNEPPDID 412

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  DRR+EVI+YV  +YG  R A      S +A  ALRDV +AL +P  Q++ L    
Sbjct: 413  VDFEHDRREEVIQYVFQRYGRNRAALTAVASSYRATGALRDVAKALGLPPDQINALAGCC 472

Query: 480  PNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                 H      I DDSR REA     +P + R+L ++  L G  RH S H  G VI ++
Sbjct: 473  GRWSEH------IPDDSRLREAGFDPDNPILRRVLVLTDALIGFPRHLSQHPGGFVISEQ 526

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596
            PL  LVP+     +D  V Q++   ++  GL+K D L L  L+ +++  D +   RG + 
Sbjct: 527  PLDTLVPIENASMADRTVIQWDKDDLDAVGLLKVDVLALGMLSAIRRCFDLIEHYRGTRW 586

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI- 655
             ++ +P +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI 
Sbjct: 587  TIATLPAEDKPTYEMISRADTIGVFQIESRAQMAMLPRLRPKTFYDLVIQVAIVRPGPIQ 646

Query: 656  -DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
             D +  Y  R+N +E++      + P+ + T GV ++QEQVM++A + + Y+  EAD LR
Sbjct: 647  GDMVHPYLRRRNKEEEVDYPSEELKPVFERTLGVPLFQEQVMELAIVAAEYTPDEADKLR 706

Query: 715  RAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RAM   K    ++  + R        G        IFE +  F  YGF +SHAA++A+++
Sbjct: 707  RAMAAWKRHGSLEPHRVRLTERMLAKGYQPDFIARIFEQIKGFGSYGFPESHAASFALLT 766

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y + W+K H P  F  A +           +  QDAR+  ++I P  V     D  +  +
Sbjct: 767  YASCWLKRHEPAAFACALINSWPMGFYNPDQILQDARRHRLEIRPVDVRHSGWDCSLEPS 826

Query: 834  R-----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            R     I   L  ++G     A+ I  A   +PF  + D C R +   L  R  E L  A
Sbjct: 827  RQAQPAIRLGLRMVRGFREADAQRIEAARQRQPFTDIHDLCLRAE---LEPRAREQLADA 883

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA           L+ L   +  A+W           +FA         I L   SV   
Sbjct: 884  GA-----------LRGLAGHRHRARWAVAG-IEPQLPLFASLPAPEETSINLPLPSVGED 931

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
                 N+   LG     HPL + +  L+    +   E      G  + +A +V+ +Q+ +
Sbjct: 932  ---LFNDYATLGTTLGPHPLLLLRDELKARRCRSSRELGTIEHGRPVSVAGLVIGRQRPQ 988

Query: 1009 TRKG 1012
            T  G
Sbjct: 989  TASG 992


>gi|312961389|ref|ZP_07775894.1| DNA polymerase III alpha subunit [Pseudomonas fluorescens WH6]
 gi|311285047|gb|EFQ63623.1| DNA polymerase III alpha subunit [Pseudomonas fluorescens WH6]
          Length = 1030

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 300/1028 (29%), Positives = 474/1028 (46%), Gaps = 93/1028 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L   S+++   GA S   + ++       A+AITD   L   +   Q A A  +  
Sbjct: 9    SYAELPCLSNFTFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVDLPL 68

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ I+                  P +VLLV    GYQ L  L++      Q K S 
Sbjct: 69   IIGSEVRIE----------------NGPKLVLLVQDLSGYQHLCRLITLARRRAQ-KGSY 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L +   + L  L          A +       +  +   ++ F +RL++ +  H
Sbjct: 112  RL----LHDDFAQPLPGLL---------ALWVAEDSDTQTSIQWLRQTFAERLWLAVHLH 158

Query: 190  RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             G D  R   Q ++LA +  +P VA  +    +       D + A+ H   V++    R+
Sbjct: 159  CGQDDARHLQQRLRLAASLRIPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAG-TRL 217

Query: 249  TP--DHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             P  + +L++   + +++   P+AL + T  IARRC+F L       PR +  E  D   
Sbjct: 218  HPNGERHLRSLDALRALY---PQALLDETQRIARRCTFDLGQLRYHYPRELVPEGHD--- 271

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     G+  R  +G  AK        Q+++ EL +I R+ +  YFL V D ++
Sbjct: 272  -AASWLRTVTEEGIAQRWPEGIDAKTL------QQINHELALIGRLGYESYFLTVHDIVR 324

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S   +AL IT+I+P   ++LFERFL+ +R   PD D+DF  +
Sbjct: 325  FARSRSI-LCQGRGSAANSAVCFALGITEINPSLTNMLFERFLSEERNEPPDIDVDFEHE 383

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL--CKLIPNDP 483
            RR+EV++YV  +YG  R A      S  A  A+RDV +AL +P  Q++ L  C    +D 
Sbjct: 384  RREEVLQYVFQRYGRTRAALTAVVSSYHASGAVRDVAKALGLPPDQINALADCCGRWSDD 443

Query: 484  AHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            A P+         R REA      P + R+L ++Q+L G  RH S H  G VI + PL  
Sbjct: 444  APPL--------ERLREAGFDPDSPLLRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDT 495

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            LVP+     ++  + Q++   ++  GL+K D L L  L+ +++  D L + R + + L+ 
Sbjct: 496  LVPVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNLDLALAT 555

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V
Sbjct: 556  IPKEDPATYAMISKADTIGVFQIESRAQMSMLPRLKPQTFYDLVIEVAIVRPGPIQGGMV 615

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R+N +EK     P +  +L+ T G+ ++QEQVMQIA + + YS  EAD LRR+M 
Sbjct: 616  HPYLRRRNKEEKTTYPSPQLKTVLERTLGIPLFQEQVMQIAMVAADYSPGEADQLRRSMA 675

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K    ++  +ER  +G   NG ++  A  IFE +  F  YGF +SHAA++A+++Y + 
Sbjct: 676  AWKRHGGLEPHQERLRTGMLNNGYTEAFAAQIFEQIKGFGSYGFPESHAASFALLTYASC 735

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GD 832
            W+K H P  F  A +           +  QDAR+  +QI P  V     D  +       
Sbjct: 736  WLKCHEPAAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASDWDCSLEPIDGQQ 795

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              I   L  I G      R +  A     F  + D   R     L+ R    L  AGAL 
Sbjct: 796  PAIRLGLRMISGFREEDGRRLEAARRRGVFRDIADLDQRAG---LDARAQALLADAGALR 852

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                +R Q           A+W E    +    +FA   G     + L   +V       
Sbjct: 853  ALAGNRHQ-----------ARW-EVAGVHTQLGLFAGLPGPDEAVVALPTPTVGED---L 897

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +   +G     HPL + +  LRK   +   E +A   G N+ +  +V  +Q+  T  G
Sbjct: 898  HADYATVGTTLGPHPLALLRDELRKRRCRSSRELMAVEHGRNVSVVGLVTGRQRPGTASG 957

Query: 1013 SRIGWVTF 1020
                 VTF
Sbjct: 958  -----VTF 960


>gi|302524129|ref|ZP_07276471.1| error-prone DNA polymerase [Streptomyces sp. AA4]
 gi|302433024|gb|EFL04840.1| error-prone DNA polymerase [Streptomyces sp. AA4]
          Length = 1053

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 277/925 (29%), Positives = 448/925 (48%), Gaps = 66/925 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           ++  L  HS++S L+GA     ++++ A  +  AIA+TD + ++  + F++ A   G+  
Sbjct: 2   AYAELHCHSNFSFLDGASHPEELVEEAARLRLDAIALTDHDGMYGVVRFAEAAKELGVAT 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           + G +L   +        Q     P    ++LL   ++GY+ L   ++   L    ++  
Sbjct: 62  VFGTELSFGLS-----APQNGVADPEGEHLLLLARGSDGYRSLCRAITAGQLRGHDEKDA 116

Query: 130 RIC--------LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180
                      LS + E       +LTG   G +  A        A   L     LFG  
Sbjct: 117 ERAEKGRPIYDLSAVAEEVVGKCAVLTGCRKGSVRSALVREGPDAAFAELRRLVDLFGRT 176

Query: 181 RLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHST 238
           ++YV L  H +  D      + ++A   +LP VAT  + +   E     D L A+ A   
Sbjct: 177 QVYVELIDHGQPLDSTHNDLLAEMADELKLPTVATTAAHYARPERGRLADALAAIRARRG 236

Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           +   +         +L++ +EM  IF   P A++ +  +   C+F L++ AP LP F   
Sbjct: 237 IDDLEGWLPGDAAAFLRSGNEMAEIFQRYPGAVQRSALLGMECAFPLKLLAPKLPPF--- 293

Query: 299 ECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              D+ K   E   LR     G + R       K   AQ  +Q +  E+ VI  + F GY
Sbjct: 294 ---DVPKGETETTHLRALVREGFKERYR----GKPKEAQAEKQ-IKHEMEVIESLGFPGY 345

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
           FLIV D +++ ++ +I +  GRGS A S   YAL IT +DP++++LLFERFL PDR   P
Sbjct: 346 FLIVWDIVRFCREQDI-LCQGRGSAANSAVCYALGITKVDPIKYNLLFERFLAPDRDGYP 404

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           D D+D   DRR+E I+YV  K+G    AQ+    + +A++A+RD  RAL     Q D   
Sbjct: 405 DIDLDIESDRREEAIQYVYGKHGRLNAAQVANVITYRARSAIRDAARALGYSPGQQDAWS 464

Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAG 531
           K I                 R+   R  +   D      +++++  LE   RH   H+ G
Sbjct: 465 KQI----------------DRWGALRSTEKDHDHDIPNDVVQLAFALEDFPRHLGIHSGG 508

Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
           +V+   P+SQ+ P+      +  V Q+  +     GL+KFD LGL  L+ L   LD + +
Sbjct: 509 MVMCREPVSQVCPVEWARMENRSVLQWEKEDCAAVGLVKFDLLGLGMLSALHYMLDLVKE 568

Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            +  ++DL+ +   D   Y +L     +G+FQ+ES      L  ++P    D+   V+L 
Sbjct: 569 YKDEEIDLAELDLADENIYEMLCHADAIGVFQVESRAQLATLPRLRPKEFYDLAVEVALI 628

Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
           RPGPI    V  Y  RK G+EK    HPL+   LK+T GV ++QEQ+MQIA  ++ ++ +
Sbjct: 629 RPGPIQGGSVHPYIRRKQGREKWEYDHPLLKNALKKTLGVPLFQEQMMQIALDVAKFTPA 688

Query: 709 EADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
           EAD LR AMG K+ + +M++  +RF+ GA  NG+   +A  IF+ L  FA++GF +SHA 
Sbjct: 689 EADQLRHAMGSKRSQRKMERLHKRFLDGAVANGVDAELAEKIFQKLKAFANFGFPESHAL 748

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT--PC 825
           ++A + + +A+ K ++P  F A  +  +       +    DAR+  +  + P +N   P 
Sbjct: 749 SFAHLVFASAYFKHYHPDAFCAGLLRAQPMGFYSPQSLVADARRHGVTTLGPDINRSLPH 808

Query: 826 VDFK-VGDNRIYYS----LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNR 879
              + + DN   ++    L+ ++ +G T A  I+ E  A+  ++S+ D   RV   +L  
Sbjct: 809 ATLEALPDNGKLHAVRGGLSTVRMIGETLAEEIVAERQANGRYESMSDLGRRV---RLTT 865

Query: 880 RVLESLVFAGALDCFGYSRMQLLQS 904
             LE+L  AGA   FG  R Q L S
Sbjct: 866 PQLEALATAGAFSAFGPDRRQALWS 890


>gi|295395748|ref|ZP_06805937.1| DNA-directed DNA polymerase III alpha subunit [Brevibacterium
            mcbrellneri ATCC 49030]
 gi|294971409|gb|EFG47295.1| DNA-directed DNA polymerase III alpha subunit [Brevibacterium
            mcbrellneri ATCC 49030]
          Length = 1032

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 295/1021 (28%), Positives = 465/1021 (45%), Gaps = 79/1021 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++S L+GA     ++    A    A+A+TD N L+ A+ F+Q+A   G+  +
Sbjct: 2    YAELHAHSNFSFLDGASDPEELVHAAHAAGLSALALTDHNGLYGAVRFAQEAQRVGMPTV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +D+   +          P    +++L  + +GY++L   +S+ Y  + G+++  
Sbjct: 62   FGAELSLDLAHKIPGQKD-----PQATHLLVLARSVDGYRQLSRAISQGY--EHGEKNRP 114

Query: 131  ICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            I    L+E+        +LTG   GP+          V+  R LT  +LF DR+ V L R
Sbjct: 115  IL--HLEELAALDPDWYILTGCRKGPLIPHLGDPDGGVSALRGLT--ELFPDRVVVELTR 170

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRP 246
                 D  R   +  LA    LP VATN   +     Y    V  A+ +H+++       
Sbjct: 171  FGHPTDDARIEHLTHLATRASLPTVATNAVHYAYRSGYRGAHVRAAIRSHASLDELAGWL 230

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKECDDI 303
                  Y++   +M   F   P  +E    I + C+F L   QV  P  P    ++ D+ 
Sbjct: 231  PADATAYVRTPHDMRERFG--PGPVETAHRIGQECAFELSAAQVGLPQAPVPPGRDADE- 287

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                   LR    AG   R       +  H + + Q +D EL  I  M F+GYFLIV D 
Sbjct: 288  ------HLRELVYAGARRRYGD----RSEHPRAWEQ-IDSELATITSMGFAGYFLIVEDI 336

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             ++   N I    GRGS A S   + L IT +D ++F LLF+RFL+P R   PD DID  
Sbjct: 337  ARFCHTNGI-YCQGRGSAANSAVCFVLGITAVDAVKFQLLFDRFLSPQRAGYPDIDIDIE 395

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR+EVI+YV   YG  R AQ+    + + K+A+RD   A      Q D   K      
Sbjct: 396  SGRREEVIQYVYRTYGRTRAAQVANVITYRTKSAVRDAASAFGYSPGQQDAFAKTT---- 451

Query: 484  AHPVSLQAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
             H  +L    D+          P V   +LE ++ L    RH   H+ G+++ DRP+  L
Sbjct: 452  -HRGALSPDTDEP---------PHVPAPVLEAARDLHDSPRHLGIHSGGMILTDRPIYDL 501

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
            VP+         V Q++        L+KFD LGL  L  L+   + + +  G  VD   I
Sbjct: 502  VPIEPAAMEGRTVIQWDKDDSAAMNLVKFDLLGLGMLEALRHMNELVKKHTGHAVDRGNI 561

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D   Y +L     +G+FQ+ES      L  M+P    D++  ++L RPGPI  +++ 
Sbjct: 562  PQED-GVYDMLCRADAVGVFQVESRAQLSTLPRMRPRNFYDLVVEIALIRPGPIQGESVH 620

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG- 718
             Y  R+ G E +   HP +   L +T GV ++QEQ+MQIA  ++G+S ++AD LRRAMG 
Sbjct: 621  PYLRRRQGVEPVTYAHPALKNSLGKTLGVPLFQEQLMQIAIDVAGFSGADADELRRAMGA 680

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            ++    M   +ERF  G S  G+  T+A  IF  +A FADYGF +SHA ++A + Y++AW
Sbjct: 681  RRSARTMAALEERFYQGCSARGVEPTVAREIFGKIAAFADYGFPESHALSFANLVYESAW 740

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP--CVDFK-----VG 831
             K  +   F AA +  +       +    DAR+  + I    +N      D +     VG
Sbjct: 741  FKYRHHAAFTAALLRSQPMGFYSPQSLIADARRHGVNIRAVDINLSHEHSDLEPDPQSVG 800

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I   L ++KG+    A  ++     +P+ S+ED   +     +    LE+L  AGA 
Sbjct: 801  GFAIRLGLTSVKGISAEVATQVVTHRT-QPYTSIEDLACKT---GIPSDALEALATAGAY 856

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            + FG  R Q L           W+  +      +          +   L   +  ++++ 
Sbjct: 857  ESFGVDRRQAL-----------WIAGSLAGAGPDTLPGTSAVM-EAPALPLMTEFDTTL- 903

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               E    G   +G+P +  +  L   G+    +++    G  I +A +V  +Q+ KT  
Sbjct: 904  --AELFSTGMTVNGYPTEHLRAALNARGLASTRDAMNAQAGARITVAGIVTHRQRPKTTT 961

Query: 1012 G 1012
            G
Sbjct: 962  G 962


>gi|162417899|ref|YP_001604616.1| DNA polymerase III, alpha subunit [Yersinia pestis Angola]
 gi|162350871|gb|ABX84820.1| DNA polymerase III, alpha subunit [Yersinia pestis Angola]
          Length = 1174

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 294/991 (29%), Positives = 471/991 (47%), Gaps = 154/991 (15%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           L V + +SL E AL   N + KIA D    A+   D+ N+ S +   +   AAG    + 
Sbjct: 4   LMVRTDFSLGESALKAENAV-KIARDAGYTAVISADSMNIASVIPLQR---AAGDDMAVI 59

Query: 73  CQLDIDMQDNLKMTNQGKTPFPT---VPSIV--------LLVSTAEGYQRLIELVSRMYL 121
           C + +++ D+    ++ +    +   + S+V         L+   +GY+ + EL++    
Sbjct: 60  CGVKLNVVDDPTYEHRARLAKESERYMESLVRDRSYCFTALIKNEQGYRDVCELMTLANK 119

Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-- 179
            +Q     R+ L  L     +G I+L     G            V ++R   F K+ G  
Sbjct: 120 REQFYFVPRLALDQLAAAYAKGNIILLTSDIG-----------SVFQRR--DFAKIIGTL 166

Query: 180 ------DRLYVNLQRHRG--YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
                 D  Y  +  H    YD+    + +++A   ++  VA   + + + +D +  D+ 
Sbjct: 167 VTAGGRDNFYSVVYPHPTPFYDQI-NVRAMKVASALKIEPVAFYPAYYEAVDDADIKDIA 225

Query: 232 MAVAHSTVVSQKDRPRVTP--DHYLKNRSEMV------SIFSDLP--EALENTVE--IAR 279
             V ++  + Q  R R+    D+ +  R  ++      S+  D+P   A+ +T +  I  
Sbjct: 226 HMVTNNIKIDQPHRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIE 285

Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR- 338
            C++      P LP+  +        +E   L   AVAGL  RL          A ++R 
Sbjct: 286 ACTWRWHELPPALPKMAD--------DEPATLMKLAVAGLRKRLTTKEFGYTPPASEHRV 337

Query: 339 --QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
              RL +E++ + R+ F GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++D
Sbjct: 338 YVDRLKYEMDTLTRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVD 397

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           P+R  LLFERF+NP+R+ +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +
Sbjct: 398 PIRHGLLFERFINPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAAS 457

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS-RFREARLADPSVDRL---- 511
           ALRD  R   +  +           D A     + + DDS    E R    S+D+     
Sbjct: 458 ALRDTARIYGVDAA-----------DMAVSKEFKNLEDDSLSLEELREQLASLDKYATKY 506

Query: 512 ---LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
               + + KL+ L R    HAAG+++   PL +  P+  ++R +     F+ ++ E  GL
Sbjct: 507 PEAFKAACKLQSLMRGFGRHAAGMIVAGVPLVERTPV--ELRGNARCIAFDKRYCEAMGL 564

Query: 569 IKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
           IK D LGL TL LL  +  ++ +  G  ++L  IP DD +         T G+FQLES  
Sbjct: 565 IKLDVLGLATLDLLDSAKRYIKESTGEDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGP 624

Query: 628 MRQALE----GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPM 681
           MR+ L+    G++P   + ++A  +L+RPGPI + ++  Y +   G     S+HP++D +
Sbjct: 625 MRKLLKDLGGGIEPMSFKTVVATTALFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDEL 684

Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA----- 736
             ET GVI+YQEQ M   +LL+G++++EAD +R+A+GKK  E+M    E+F+  A     
Sbjct: 685 TAETNGVILYQEQTMNATRLLAGFTMAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWI 744

Query: 737 -----------------------------------------------SKNGISKTIAVNI 749
                                                          S+ G+S+T A  I
Sbjct: 745 DVEMEDGTTQRIHRAEHFKCEDGALRTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEI 804

Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
           ++   K   Y FNKSH  AY++ISYQ+ W+KTHYP EF AA++T+  ++  K +   +DA
Sbjct: 805 WDAFEKNGAYQFNKSHPVAYSLISYQSMWLKTHYPAEFFAAALTILGED--KHQGLVKDA 862

Query: 810 RQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEA--SADKPF 862
             + I ++PP VN      ++     G   +Y   +A+KG      + IM A       F
Sbjct: 863 LTYGIHVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGCQAIMRAREKVGGKF 922

Query: 863 DSLEDFCSRVDSK--KLNRRVLESLVFAGAL 891
           +SLE F   VD +    N RV ESL   GA 
Sbjct: 923 ESLEQFEEAVDKRACACNSRVRESLQKVGAF 953


>gi|294339290|emb|CAZ87646.1| Error-prone DNA polymerase [Thiomonas sp. 3As]
          Length = 1037

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 284/944 (30%), Positives = 453/944 (47%), Gaps = 70/944 (7%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +V L   S++S L GA     ++++        +A+TD  +L   +     A AAG+ 
Sbjct: 5   PDYVELHCRSNFSFLTGASHPEELVERAQELHYAGLAVTDECSLAGIVRAHGAAKAAGLP 64

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G Q  ++  +  +       PF    ++V+L     GY  L E ++R+      K S
Sbjct: 65  LLVGAQFAVEGDEKTR-----TPPF----TLVVLACNLNGYGNLCEFITRLRRASP-KGS 114

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL----FGDRLYV 184
            R+     Q I  E L                  S Q  +++LL         F  R+++
Sbjct: 115 YRLD---RQSITGEALADCV---------VLAVPSRQATDEQLLELGAWLLARFTGRVWL 162

Query: 185 NLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            ++ HR  D  R  + +Q LA    +PLVA  +            D L A+     +++ 
Sbjct: 163 AVELHRRLDDERWLERLQDLAEATAIPLVAAGDVHMHRRSRKPLQDTLTAIRLGLPIAEC 222

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               + P+     RS +    S  PE L  T+ +A RC F L       P    KE    
Sbjct: 223 GHA-LQPNAERHLRSRLRLALSYPPELLAETLRVAARCRFSLDELRYRYP----KEVIPA 277

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +  +  LR +   G   R   G  A+    QD    L+ EL +IA + ++ YFL V D 
Sbjct: 278 GETADGYLRRRVYEGAGRRWPDGLHAR---VQDL---LEHELALIAELGYAHYFLTVDDI 331

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           + +A+  +I +  GRGS A S   YAL IT++DP +  +LFERF++ +R   PD D+DF 
Sbjct: 332 VAFARSRHI-LCQGRGSAANSAVCYALGITEVDPEQQQVLFERFISKERNEPPDIDVDFE 390

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            +RR+EVI+Y+  KYG +R A        + K+ALRDVG+AL      V+RL + +    
Sbjct: 391 HERREEVIQYLYAKYGRDRAALTAAVIRYRPKSALRDVGKALGFDLETVERLARNVQWWD 450

Query: 484 AHPVSLQAIADDSRFREARLADP---SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              V+ +      R  E  L DP    V + + + ++L G  RH S H  G V+ + PLS
Sbjct: 451 GREVARE------RLEEVGL-DPEALGVQQWMALVRQLLGFPRHLSQHTGGFVLTEGPLS 503

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
           +LVP+      +  V +++   ++ AGL+K D L L  LT ++K+LD + Q RG    + 
Sbjct: 504 RLVPIENASMPERTVIEWDKDDLDAAGLLKVDILALGMLTAIRKALDAIGQSRGQVFAMQ 563

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP +D +TY +L    ++G+FQ+ES   +  L  +QP C  D++   ++ RPGPI   +
Sbjct: 564 DIPREDPQTYDMLCQADSVGVFQVESRAQQGMLPRLQPRCFYDLVIETAIVRPGPIQGGM 623

Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           V  Y NR+ GKE +V     ++ +L+ T GV ++QEQVMQIA + +G+S  EAD LRRAM
Sbjct: 624 VHPYLNRRQGKETVVYPSKDLESVLQRTLGVPVFQEQVMQIAMVAAGFSAGEADGLRRAM 683

Query: 718 GK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
              +    ++K ++R ISG ++ G     A +I+E +  F++YGF +SHAA++A++ Y +
Sbjct: 684 AAWRRTGSLEKYRDRLISGMAERGYPPDFAQSIYEQVQGFSEYGFPESHAASFALLVYAS 743

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
           AW+K H+P EFL A +  +        +  QDA++  + + P  V     D  + +   Y
Sbjct: 744 AWIKRHHPAEFLMALLNSQPMGFYTPSQLVQDAKRHGVTVRPVDVLHSDWDCTLEEGVPY 803

Query: 837 ----YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
                 L  +KG+G      I  A    P    ED   R    +L+   +  L  A AL 
Sbjct: 804 PTVRLGLRLVKGLGREVGWRIANARLHSPPVDAEDLAKRA---QLDTPAMRQLAAADALR 860

Query: 893 CF-GYSRMQLLQS---------LDNIQKYAQWVEKNRTNKHENI 926
              G+ R Q+ ++         LD+      W+E     + E+I
Sbjct: 861 SLSGHRRQQVWEATAVERLPALLDDAAPQEDWLELPAPPEGEDI 904


>gi|218193695|gb|EEC76122.1| hypothetical protein OsI_13390 [Oryza sativa Indica Group]
          Length = 3986

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/486 (40%), Positives = 289/486 (59%), Gaps = 16/486 (3%)

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            V  ++E++QKLEG+ R+   HA G++I    L+   P+Y+   S+  V+Q++   +E  G
Sbjct: 2891 VKTVIEMAQKLEGMTRNIGMHAGGVLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIG 2950

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLE 624
            L+KFDFLGL TLT+L+ + +F+ +R    +      IP DD  TY L +   T  +FQ E
Sbjct: 2951 LVKFDFLGLATLTILEIAREFIMKRHKGQENFAFENIPLDDAPTYRLFSEGKTEAVFQFE 3010

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S GM+  L+  +P  +ED+IAL +LYRPGP+D I  + NRK+GKE +   HPL++P+L E
Sbjct: 3011 SRGMQGMLKEARPSRLEDLIALNALYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLAE 3070

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+++YQEQVMQ AQ+L GYSL  AD+LRRAMGKK  EEM + +E F  GA++ GI + 
Sbjct: 3071 TYGIMVYQEQVMQTAQVLGGYSLGGADMLRRAMGKKKAEEMAEHREIFRKGAAEKGIGQD 3130

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
             A  +F+L+ KFA YGFNKSHAAAY++++Y T W+K HY  EF  A+MT+EMD+ +K+K 
Sbjct: 3131 KADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKV 3190

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK--- 860
              +DA +  +   PP VN     F+ V D  I Y L A+KG G      I+ A   +   
Sbjct: 3191 LYEDAMKMGLTFEPPDVNRGMYRFEPVTDKVIRYGLGAVKGTGQQAIEAIIAAREGRGVG 3250

Query: 861  -------PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
                   PF SL DFC+RVD  +LN+R LE+L+ AGA D    +R  L+ S+D    +A 
Sbjct: 3251 PRGETKGPFASLFDFCARVDRTRLNKRTLEALIKAGAFDAIEMNRASLVASIDRAFDFAN 3310

Query: 914  WV--EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             +    N+    + +     G+ +    L +        R   E+  +GFY SGH  D  
Sbjct: 3311 SLIANANQGGLFDMMGDDSHGSSTQDPALVEMLPWGVKERLTQEKTAVGFYLSGHLFDEV 3370

Query: 972  KPILRK 977
            +  +R+
Sbjct: 3371 EKEVRR 3376



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 70/117 (59%), Gaps = 10/117 (8%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +  ++P FVHL++H+ +S+++G   ++ +    + D QPA+AITD +NLF A++F ++A 
Sbjct: 2750 HARRAPMFVHLRLHTEFSVVDGTARIDEVAKAASKDGQPALAITDLHNLFGAIKFYKEAR 2809

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
              G++P++G ++ I+ +        G  P      I+LL    +GY  L EL++R +
Sbjct: 2810 GKGVKPVLGAEVSIEPE------TAGNPP----GRILLLAQGRQGYLNLCELLARAW 2856


>gi|258652927|ref|YP_003202083.1| DNA polymerase III subunit alpha [Nakamurella multipartita DSM
           44233]
 gi|258556152|gb|ACV79094.1| DNA polymerase III, alpha subunit [Nakamurella multipartita DSM
           44233]
          Length = 1422

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 301/1010 (29%), Positives = 476/1010 (47%), Gaps = 142/1010 (14%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL VH  +S  +G    +++++      QPA+A+TD  ++  A  F Q A  AGI+PI
Sbjct: 8   FVHLHVHGEHSHQDGISRADDLVEAAVRHGQPALALTDHGSIGGAWRFGQAAAQAGIKPI 67

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFP----------------------TVPSIVLLVSTAEG 108
           IG +  + + D      +G  P P                      T   + +L +T EG
Sbjct: 68  IGVEAYLAIGDR---ALRGSRPVPRDLLGADGGGAGADAEVGFKKQTYEHLTVLAATGEG 124

Query: 109 YQRLIELVSRMYLLDQGK---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----- 160
           +  L  L +     D  +      R+  + L    + GLI LTG  SGP+  A       
Sbjct: 125 FGNLSRLTA-----DASRHVYHRPRMDYTSLAA-HSAGLIGLTGCVSGPVAGALLRDGTR 178

Query: 161 ------FNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLV 212
                 F+    A++ ++T + +FG DRL+V +  H    +R    Q+  LA    L  +
Sbjct: 179 QPDGTVFDGRAAAKQAIITLRDIFGRDRLFVEVMDHGIAAERRVTEQLFDLARRAGLKTL 238

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHST---------VVSQKDRPRVTPDHY-LKNRSEMVS 262
            TN+S + + +D   HD+ + +  +T          ++  +R R T   Y L++ +EM +
Sbjct: 239 FTNDSHYTNADDAPLHDLWLCIGETTRQGAGKPPFKITDTNRWRFTGTGYHLRSTAEMYA 298

Query: 263 IFSD---LPEALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQKEEENELRNKAVA- 317
           +         AL NT+ +A      +   + I LPR+          E    L +     
Sbjct: 299 LAGGDDRAVRALRNTLLVADMIEDRVLPESRIRLPRYDRLGAFTCAAELLRSLVDDGAGE 358

Query: 318 --GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
             G + R A+          D   R+D EL VI ++ F  YFLIV + +  A+      G
Sbjct: 359 RWGADWRAAR---------PDVANRIDHELAVINQLGFVDYFLIVREALYAARGAGYRTG 409

Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
           PGRGS AGS  +YAL I D+DPL   LLFERFL+P R  MPD D D  +  +  V RY+ 
Sbjct: 410 PGRGSAAGSAVSYALRIVDVDPLANGLLFERFLDPTRAEMPDIDSDLDRAGQQWVFRYLS 469

Query: 436 NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV---DRLCKLIPN---------DP 483
            ++G +RVA+I   G  +A+A++RD  RA+   ++ +   ++L   +P          DP
Sbjct: 470 ERWGADRVARIGAPGYTRARASIRDAARAIVPGHAAIQVGNQLAAKVPPTAPTLAGLIDP 529

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +P       D    R A   DP    +L+ +  +EGL + A  HA G+V+   PL  LV
Sbjct: 530 TNP-------DGEALRAAVPTDPDHQAVLDSAVGIEGLVKQAGVHACGVVVSSEPLPPLV 582

Query: 544 PMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVD- 597
           P+ R V +D    + VT +++  +   GL+K DFLGL+TL ++  ++    A  G  +D 
Sbjct: 583 PL-RQVTADDGQPIWVTDWDVHDLADLGLVKIDFLGLRTLDVIDAAVAQIRASTGTDIDP 641

Query: 598 --LSLIPFDD--HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             L+  P D      + +L    T G+FQLES+ M    E  +P  I+D+ A+++L+RPG
Sbjct: 642 EHLADEPGDPRAEAVWTMLGAGRTSGVFQLESASMAGLCERARPRSIDDLSAILALWRPG 701

Query: 654 PIDNIV--VYNNRKNGKEKIVSIHPLIDP--------MLKETQGVIIYQEQVMQIAQLLS 703
           PI      ++  R+ G + +       DP        +L  TQG+I+YQEQ+MQI  L++
Sbjct: 702 PISAGFPDLFAARQTGADTVDYSIFTTDPAEERALRTVLDTTQGLIVYQEQIMQIGALVA 761

Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFI---------SGASKNGISKTIAVNIFELLA 754
           G+  +    LR+A+ KK    M +  ERF+          GA+K   +++ A  ++  + 
Sbjct: 762 GFGPTLTSKLRKAVSKKDAAAMTEIGERFLVGAARDVTDDGAAKQPFARSTARALWAGIK 821

Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
               Y FNKSH+ AYA +++QTAW+K  Y  +F AA +    D+ +K      D R   +
Sbjct: 822 GAGAYSFNKSHSRAYAELTWQTAWLKASYLPQFAAALLAC-TDSADKRAAALMDLRSEQV 880

Query: 815 QIMPPSVN-----TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
            ++ PSVN     T C    V    +   L+ I GVG+  A  + E +    +  L +  
Sbjct: 881 TVLGPSVNHGADVTSCDRHGV----VRLGLSEIAGVGSAGAAIVRERTHGGDYTDLHNLY 936

Query: 870 SRV---------DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
            RV         D++ L+   L +LV +GALD FG  RM L   + +++ 
Sbjct: 937 RRVRVPDAAGSGDTRPLSASTLLALVESGALDQFG-PRMGLAALIGSVKS 985


>gi|293411935|ref|ZP_06654660.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469490|gb|EFF11979.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 1172

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 292/983 (29%), Positives = 464/983 (47%), Gaps = 140/983 (14%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           L V + +SL E AL   N + KIA +    A+   D+ N+ S +   Q+A    +  I G
Sbjct: 4   LMVRTDFSLGESALKAENAV-KIAREAGYTAVISADSMNIASVIPL-QRAAGDDMAVICG 61

Query: 73  CQLDI----DMQDNLKMTNQGKTPFPTVP-----SIVLLVSTAEGYQRLIELVSRMYLLD 123
            +L+I      +   K+  +      ++      S   L+   +GY+ + EL++     +
Sbjct: 62  VKLNIVDDPTYEHRAKLAKESMGCMESLERGRNYSFTALIKNEQGYRDICELMTAANTRE 121

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI----DRAFFFNSSQVAEKRLLTFKKLFG 179
           Q     R+ L  L     +G I+L     G +    D A   +S   A  +         
Sbjct: 122 QFYFVPRLSLEQLVSTYAKGNIILLTADIGSVYQRNDFAKIISSLITAGGK--------- 172

Query: 180 DRLYVNLQRHRG--YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
           +  Y  +  H    YD+    + +++A   ++  VA   + + S +D +  D+   V ++
Sbjct: 173 NNFYSVVYPHPTPFYDQI-NVRAMKVASALKIEPVAFYPAYYESIDDADIKDIAHMVTNN 231

Query: 238 TVVSQKDRPRVTP--DHYLKNRSEMV------SIFSDLP--EALENTVE--IARRCSFIL 285
             + Q  R R+    D+ +  R  ++      S+  D+P   A+ +T +  I   C++  
Sbjct: 232 IKIDQPHRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIDACTWRW 291

Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLD 342
               P LP+  +        +E   L   AVAGL  RL     G        + Y +RL 
Sbjct: 292 HELPPALPKMAD--------DEPATLMKLAVAGLRKRLTTKEFGYTPPASENRVYVERLK 343

Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
           +E++ + R+ F GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  L
Sbjct: 344 YEMDTLTRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGL 403

Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
           LFERF+NP+R+ +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  
Sbjct: 404 LFERFINPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTA 463

Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS-RFREARLADPSVDRL-------LEI 514
           R   +  +           D A    L+ + DDS    E R    S+D+           
Sbjct: 464 RIYGVESA-----------DMAVSKELKNVEDDSLPLEELREQLASLDKYATKYPDAFNA 512

Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
           + KL+ L R    HAAG+++   PL++  P+ R  R D     F+ ++ E  GLIK D L
Sbjct: 513 ACKLQSLMRGYGRHAAGMIVAGVPLTERTPVER--RGDARCIAFDKRYCEAMGLIKLDVL 570

Query: 575 GLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
           GL TL LL  +  ++ +  G  ++L  I  +D +         T G+FQLES  MR+ L+
Sbjct: 571 GLATLDLLDSAKRYIKENTGEDINLDAISLEDRKVLDGFAAGYTQGVFQLESGPMRKLLK 630

Query: 634 ----GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQG 687
               G++P   + ++A  +L+RPGPI + ++  Y +   G     S+HP++D +  ET G
Sbjct: 631 DLGGGIEPMSFKTVVATTALFRPGPIQSGMLDDYVSVAKGFMTPESLHPVLDELTAETNG 690

Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA----------- 736
           VI+YQEQ M   +LL+G++++EAD +R+A+GKK  E+M    E+FI  A           
Sbjct: 691 VILYQEQTMNATRLLAGFTMAEADGVRKAIGKKDMEKMKSMGEKFIVQAQAGWIDVELED 750

Query: 737 -----------------------------------------SKNGISKTIAVNIFELLAK 755
                                                    S  G+S+  A  I+    K
Sbjct: 751 GTTQRIHRAEHFKCEDGTLKTVEEALEFGAKLPINAVRVTASHPGLSEMKAKEIWTAFEK 810

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
              Y FNKSH+ AY++ISYQ+ W+KTHYP EF AA++T+  ++  K +   +DA  + I+
Sbjct: 811 NGAYQFNKSHSVAYSLISYQSMWLKTHYPAEFFAAALTILGED--KHQGLVKDALTYGIR 868

Query: 816 IMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEA--SADKPFDSLEDF 868
           ++PP VN      ++     G   +Y   +A+KG      + IM A       F+SL  F
Sbjct: 869 VLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGCQAIMRAREKVGGKFESLAQF 928

Query: 869 CSRVDSKKLNRRVLESLVFAGAL 891
              V+ +  N RV ESL   GA 
Sbjct: 929 EEAVEKRACNSRVRESLQKVGAF 951


>gi|153010470|ref|YP_001371684.1| DNA polymerase III, alpha subunit [Ochrobactrum anthropi ATCC 49188]
 gi|151562358|gb|ABS15855.1| DNA polymerase III, alpha subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 1059

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 304/1034 (29%), Positives = 479/1034 (46%), Gaps = 97/1034 (9%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P++  LQV S +S L GA S   +    AA    A+A+TD N L   +   + A  AG+
Sbjct: 3    APAYAELQVTSHFSFLRGASSAEELFAAAAAMGIEALAVTDRNTLAGIVRAHEAAKEAGV 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+GC+LD+                    S+++  +    Y RL  L+S    L +G+ 
Sbjct: 63   RLIVGCRLDL----------------ACGMSVLVYPTDRAAYSRLCRLLS----LGKGRA 102

Query: 128  SVRIC-LSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                C L W   +   EGLI++               + +    RL   +  FGDR Y+ 
Sbjct: 103  GKARCHLEWDDLVAYGEGLIVVLAPDL----------ADETCGLRLRRLRDAFGDRAYLG 152

Query: 186  LQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV---- 240
            L  R R  D+ R  ++  LA    +P V TN+ LF         DV+ A+ H+  V    
Sbjct: 153  LTLRRRPNDQMRLWELSTLAAGLGVPTVVTNDVLFHEPGRRILQDVVTAIRHNLTVDALG 212

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            +++DR     D YLK  +EM  +F+  PEAL  T EIA RC F L       P    +E 
Sbjct: 213  TRRDR---HADRYLKPPAEMHRLFARWPEALARTREIADRCRFSLDELRYQYP----EER 265

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            DD     +  L      G   R  +G         +    L  EL +I ++ ++ YFL V
Sbjct: 266  DDPALTPQETLERLTWEGAASRYPEGV------PDEVTAALKHELALIGKLDYAPYFLTV 319

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
               +++A+   I +  GRGS A S   Y L IT IDP R  LLFERF++ +R   PD D+
Sbjct: 320  NSIVRFARSRGI-LCQGRGSAANSAVCYVLGITAIDPGRNDLLFERFVSEERREPPDIDV 378

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI++V   YG ER A   T    ++K ALRDVG+AL +P   +  L   + 
Sbjct: 379  DFEHERREEVIQWVYEHYGRERAALTATVIRYRSKGALRDVGKALGLPEDLIQTLSGQLW 438

Query: 481  NDPAHPVSLQAIAD---DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                  V+ Q + D   + + R  RL        LE++ +L G  RH S H  G V+   
Sbjct: 439  GWSEAGVTEQQLRDLNLNPQDRRLRLT-------LELAAQLRGAPRHLSQHPGGFVLTHD 491

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596
             L  LVP+         + +++   I+    +K D L L  L+ +++ LD LA+ + +++
Sbjct: 492  RLDDLVPIEPAAMEGRQIIEWDKDDIDALRFMKVDVLALGMLSCMRRGLDLLAEHKDIRL 551

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI- 655
            DL+ IP +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI 
Sbjct: 552  DLASIPAEDPRTYAMIRKADTLGTFQIESRAQMSMLPRLKPRTYYDLVVQVAIVRPGPIQ 611

Query: 656  -DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
             D +  Y  R+ G E++    P ++ +L +T GV ++QEQ M++A   +G++  EAD+LR
Sbjct: 612  GDMVHPYLRRREGLEEVDYPRPELEKVLGKTLGVPLFQEQAMRVAIECAGFTAGEADLLR 671

Query: 715  RAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            ++M   K    + K ++R ISG  + G  +  A   F+ L  F  YGF +SHAA++A+I+
Sbjct: 672  KSMATFKHTGGVSKFRDRLISGMIERGYEQDFAERTFQQLEGFGSYGFPESHAASFALIA 731

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVDFKV 830
            Y +AW+K  +P  F AA +  +        +  +DAR+  +++ P  +N     C     
Sbjct: 732  YASAWLKCWHPDVFCAALLNAQPMGFYAPAQIVRDAREHEVEVRPVCINASRWDCTLEPT 791

Query: 831  GDNR---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            GD     +   L  +KG+    A  I+ A  D+ F S++D   R     +    L+ +  
Sbjct: 792  GDESRFAVRLGLRMVKGLANAHAAAIVAAQGDEMFTSVDDLWRRA---GVPVAALDQIAA 848

Query: 888  A-GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSD----KI 938
            A G    FG +R           + AQW  K   ++   +FA     E  T  +     I
Sbjct: 849  ADGFRPAFGLAR-----------REAQWAIKGLRDEELPLFAAASEREGRTVPELDEPAI 897

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
             L         V    +   +G     HP+   +  L +  I    E++A      +  A
Sbjct: 898  ALRAMPAGREVV---EDYGHIGLSLRRHPVSFLREDLARRRIVTCAEAMAARDQRWLEAA 954

Query: 999  AMVVSKQQKKTRKG 1012
             +V+ +Q+  +  G
Sbjct: 955  GIVLVRQRPGSANG 968


>gi|134287639|ref|YP_001109805.1| DNA polymerase III, alpha subunit [Burkholderia vietnamiensis G4]
 gi|134132289|gb|ABO60024.1| DNA polymerase III, alpha subunit [Burkholderia vietnamiensis G4]
          Length = 1048

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 310/1035 (29%), Positives = 490/1035 (47%), Gaps = 100/1035 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AA + 
Sbjct: 10   PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAANMA 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS--RMYLLDQGK 126
             IIG    +   D            P + +   L    +GY  L E +S  RM    +GK
Sbjct: 70   LIIGSHFRLTAADGA----------PAL-AFTALAMNRDGYGNLCEFISLGRM----RGK 114

Query: 127  QSVRICLSWLQEIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            +          E        L G      I    F  + Q  + ++  F ++FGDR +V 
Sbjct: 115  KGTYRLAPLDLEHPEAPYTHLRGLPDCIAILSPDFPANEQRLDAQVEWFARVFGDRAWVA 174

Query: 186  LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L  H R  D      V ++A  H +P+VAT+  L          DVL  +     VS+  
Sbjct: 175  LTLHARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGRPVSECG 234

Query: 245  RPRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
               + P  + +L++R  + +++     ALE TV +ARRC+F L               DD
Sbjct: 235  Y-ELAPNAERHLRSRLRLANLYP--AGALEETVRVARRCTFSL---------------DD 276

Query: 303  IQKEEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            ++ E  +EL           R +   G   R   G         D + +++ EL +IA +
Sbjct: 277  LKYEYPDELVPAGTDPATYLREQTYIGARRRFPAGI------PIDVQAQIEHELQLIADL 330

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            K+  YFL V D +Q+A++  I +  GRGS A S   Y L +T++DP R S+LFERF++ +
Sbjct: 331  KYEAYFLTVYDIVQFAREQGI-LCQGRGSAANSSVCYCLGVTEVDPSRQSMLFERFISKE 389

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+DF   RR+EV++Y+  KYG +R A      + + ++ALR+ G+AL +  + 
Sbjct: 390  RNEPPDIDVDFEHQRREEVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDPAI 449

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV---DRLLEISQKLEGLYRHASTH 528
            VDR+ K      +    LQ      RF EA L DP      +    + +L G  RH S H
Sbjct: 450  VDRVAKQHHWFDSRADLLQ------RFSEAGL-DPDAPLNQQWAAFAAQLLGYPRHLSQH 502

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            + G VI    L++LVP+      D  + Q++   IE  G++K D L L  L++++++LD 
Sbjct: 503  SGGFVISRGKLTRLVPVENAAMEDRSIIQWDKDDIEALGILKIDVLALGMLSMVRRALDM 562

Query: 589  LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            +++ RG   +L  IP +D  TY +L    ++G+FQ+ES      L  ++P C  D++  V
Sbjct: 563  ISEKRGETFELQDIPAEDKATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEV 622

Query: 648  SLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            ++ RPGP+   +V+    R+ G E +      ++  L  T GV I+QEQVMQ+A L +G+
Sbjct: 623  AIVRPGPVQGGMVHPFLRRRQGLEPVTFPSEGMEKALARTLGVPIFQEQVMQVAMLAAGF 682

Query: 706  SLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            S  EAD LRRAM   K K  ++   ER +SG  + G  +  A +IF  +  F +YGF +S
Sbjct: 683  SAGEADQLRRAMAAWKRKGGLEPYHERLVSGMLERGYDREFAESIFAQIKGFGEYGFPES 742

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAA++A++ Y +AW++ H P  FLAA +  +        +  QDAR+  ++++P  VN  
Sbjct: 743  HAASFALLVYSSAWLRRHEPAVFLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVS 802

Query: 825  CVDFKV------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
              D  +         R+ +SL  ++G+    A  I  A A +PF  + D   R    +L+
Sbjct: 803  TWDSALEGPATSAPVRLGFSL--LRGMREDVAGRIELARAARPFVDVADLARRA---RLD 857

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            R  L+ L  A AL C          SL   ++ A W+        + +    +GT  D  
Sbjct: 858  RHDLQVLARANAL-C----------SLTGGRRAALWLAAAALPDRDLL----RGTERDD- 901

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRL 997
            T+      +       + R +GF    HPL + +  L    ++  E+ +AT+R G   R 
Sbjct: 902  TVPALPQASEGHEIVTDYRAMGFTLGRHPLALLRERLALDRLQSAEQ-LATLRSGQLARA 960

Query: 998  AAMVVSKQQKKTRKG 1012
              +V  +Q+  T  G
Sbjct: 961  CGLVTVRQRPGTANG 975


>gi|254239049|ref|ZP_04932372.1| hypothetical protein PACG_05227 [Pseudomonas aeruginosa C3719]
 gi|126170980|gb|EAZ56491.1| hypothetical protein PACG_05227 [Pseudomonas aeruginosa C3719]
          Length = 1031

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 301/1028 (29%), Positives = 488/1028 (47%), Gaps = 86/1028 (8%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +  +L +  ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q
Sbjct: 1    MAAWLVRMSAYAELHCLSNFSFQRGASSATELFARAARLGYRALAITDECSLAGIVRAWQ 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A    +Q I+G ++ ++         QG       P +VLL    EGYQ L  L++R  
Sbjct: 61   AAREHQVQLIVGSEIRLE---------QG-------PKLVLLAEDLEGYQNLCRLITRGR 104

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 K   R+    LQ+    GL+ +           +  N  +  ++++   ++ F  
Sbjct: 105  R-QADKGHYRLLREDLQQ-PLAGLLAI-----------WLPNDHE--DEQVAWLRERFPQ 149

Query: 181  RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            RL++ ++ HRG D   R  +++ LA    LP VA  +    +       D + A+ +   
Sbjct: 150  RLWLGVELHRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLP 209

Query: 240  VSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFI 296
            VS+     + P  + +L+    +  I+   P+AL   T++IA RC F L+      PR +
Sbjct: 210  VSEAG-AYLFPNGERHLRTLEALQGIY---PQALLAETLKIAERCRFDLEQLKYQYPREL 265

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                 D      + LR+    G+  R   GA AK       R++++ EL +IA + +  Y
Sbjct: 266  VPAGHD----PASWLRHLTEQGIARRWPNGASAK------VRKQIERELELIAELGYESY 315

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D + +A+   I +  GRGS A S   +AL IT++DP R +LLFERFL+ +R   P
Sbjct: 316  FLTVQDIVAFARGREI-LCQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPP 374

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  +RR+EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L 
Sbjct: 375  DIDVDFEHERREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLA 434

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
                       S QA + + R  EA      P + R+L ++ +L G  RH S H  G VI
Sbjct: 435  NCCGR-----WSDQAPSAE-RLEEAGFDPQSPILRRVLALTGELIGFPRHLSQHPGGFVI 488

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRG 593
             ++PL  LVP+     ++  V Q++   ++  GL+K D L L  L+ L++S D + A RG
Sbjct: 489  SEQPLDTLVPVENASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRG 548

Query: 594  VK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             K + ++ IP +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 549  GKRLSIASIPSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRP 608

Query: 653  GPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GPI  D +  Y  R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EA
Sbjct: 609  GPIQGDMVHPYLRRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEA 668

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            D LRR+M   K    ++  +ER   G   NG     A  IFE +  F  YGF +SHAA++
Sbjct: 669  DELRRSMAAWKRHGGLEHHRERLTRGMLANGYEADFAARIFEQIKGFGSYGFPESHAASF 728

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-- 827
            A+++Y ++W+K H P  F  A +           +  QDAR+  +Q  P  V     D  
Sbjct: 729  ALLTYASSWLKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCS 788

Query: 828  ---FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
               F      I   L  I+G     AR I +    +PF  + D   R    +L+ R LE 
Sbjct: 789  LESFGQAQPAIRLGLRMIRGFREEDARRIEQVREAQPFLDVHDLGRRA---RLDARALEL 845

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  AGA           L+ L   +  A+W   +       +FA  +GT  ++ T+    
Sbjct: 846  LADAGA-----------LRGLAGHRHKARWAVAS-VEPQLPLFA--EGTVIEESTV-SLP 890

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
            + +      ++  +LG     HPL + +  L+    +   E      G  IR+A +V+ +
Sbjct: 891  LPSRGEELLSDYALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVIGR 950

Query: 1005 QQKKTRKG 1012
            Q+ +T  G
Sbjct: 951  QRPQTASG 958


>gi|307321595|ref|ZP_07600988.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
 gi|306892764|gb|EFN23557.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
          Length = 1087

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 292/1026 (28%), Positives = 481/1026 (46%), Gaps = 88/1026 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L V + +S L GA S   +          A+ + D N+L   +   + + A G++ +
Sbjct: 3    YAELHVTTDFSFLRGASSAEELFATAKLMGIEALGVVDRNSLAGIVRALEASRATGLRLV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+LD  +QD +              SI++  +    Y RL    +R+  L +G+    
Sbjct: 63   VGCRLD--LQDGM--------------SILVYPTDRAAYSRL----TRLLTLGKGRGGKA 102

Query: 131  ICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             C+    ++    EGLI +   +           + +V   +L    ++FGDR YV+L  
Sbjct: 103  NCIIHFDDVALYAEGLIGILVPNL----------ADEVCAVQLRKIAEVFGDRAYVSLCL 152

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK--DR 245
            R R  D+ R  ++  LA  H L  + TN+ LF      +  DV+  +   T +     +R
Sbjct: 153  RRRPNDQLRLHELTNLAVKHRLKTIVTNDVLFHEHGRRQLQDVVTCIRTGTTIDDVGFER 212

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R   D YLK   EM  +F   PEAL  T+EI  RC F L+      P    +E      
Sbjct: 213  ER-HADRYLKPPEEMARLFPAYPEALARTMEIVERCRFSLEELVYQYP----EEALIPGM 267

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L++    G+  R  +G  A   H +   + +  EL +I  MK++ YFL V   ++
Sbjct: 268  TAQQSLQHYTWEGVRARYPEGLPA---HVE---KTIRHELALIETMKYAPYFLTVFSIVR 321

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +
Sbjct: 322  YARSQGI-LCQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHE 380

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+++   YGH++ A   T    +AK A+RDVG+AL +P   +  L   I      
Sbjct: 381  RREEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALGLPEDLIKTLSSGI------ 434

Query: 486  PVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              S      + + RE  L +P   RL   L+++Q+L G  RH   H  G V+    L  L
Sbjct: 435  -WSWSETVGERQVRELGL-NPDDRRLTLTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDL 492

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+     +D  V +++   IE    +K D L L  LT + K+   +++ +   +DL+ I
Sbjct: 493  VPIEPATMADRQVIEWDKDDIEALKFMKVDVLALGMLTCMAKAFALISEHKHEDIDLATI 552

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY ++    TLG FQ+ES      L  M+P    D++  V++ RPGPI  D + 
Sbjct: 553  PQEDPSTYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAIVRPGPIQGDMVH 612

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+ GKEK+    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M  
Sbjct: 613  PYLRRREGKEKVEYPTPELEAVLHKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMAT 672

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    + + K++ ++G  ++G ++  A   F  L  F  YGF +SHAA++A+I+Y + +
Sbjct: 673  FKFTGGVSRFKDKLVNGMIRDGYTQEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNY 732

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GD 832
            +K H+P  F AA +  +        +  +DAR+  +++ P  +N    D  +      G 
Sbjct: 733  IKCHFPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSRWDCMLEPIDGSGG 792

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            + +   +  ++G+ T  A  I+ A AD+PF S++D   R          + SLV     D
Sbjct: 793  HAVRLGMRLVRGLATADAARIVAARADEPFTSVDDMWRRSGVP------VASLVELAEAD 846

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
             F       L SL   ++ A W  K   ++   +F       +  I  E+   E    + 
Sbjct: 847  AF-------LPSLGLERRDALWAIKALRDEPLPLFTAAADREARAIA-EQQEPEVKLRQM 898

Query: 953  ENEQRVL------GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
             +   V+      G     HPL   +  L K  I     ++    G  + +A +V+ +Q+
Sbjct: 899  TDGHNVVEDYSHTGLTLREHPLRFMRDDLAKRRIVTCARAMTAHDGQWLIVAGLVLVRQR 958

Query: 1007 KKTRKG 1012
              + KG
Sbjct: 959  PGSVKG 964


>gi|31795434|ref|NP_857887.1| putative DNA polymerase III alpha subunit [Yersinia pestis KIM]
 gi|40787972|ref|NP_857689.2| DNA polymerase III alpha subunit [Yersinia pestis KIM]
 gi|52788118|ref|YP_093946.1| putative DNA polymerase III alpha chain [Yersinia pestis]
 gi|108793591|ref|YP_636745.1| DNA polymerase III [Yersinia pestis Antiqua]
 gi|108793791|ref|YP_636633.1| DNA polymerase III [Yersinia pestis Nepal516]
 gi|145597255|ref|YP_001154722.1| DNA polymerase III [Yersinia pestis Pestoides F]
 gi|167402528|ref|ZP_02307979.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|229904862|ref|ZP_04519972.1| DNA polymerase III alpha subunit [Yersinia pestis Nepal516]
 gi|270491053|ref|ZP_06208126.1| DNA polymerase III, alpha subunit [Yersinia pestis KIM D27]
 gi|294502044|ref|YP_003565781.1| DNA polymerase III [Yersinia pestis Z176003]
 gi|14194660|sp|O68770|DPO3A_YERPE RecName: Full=DNA polymerase III subunit alpha
 gi|3883104|gb|AAC82764.1| putative DNA polymerase III , alpha subunit [Yersinia pestis KIM
           10]
 gi|52538047|emb|CAG27472.1| putative DNA polymerase III alpha chain [Yersinia pestis]
 gi|108777855|gb|ABG20373.1| DNA polymerase III [Yersinia pestis Nepal516]
 gi|108782138|gb|ABG16195.1| DNA polymerase III [Yersinia pestis Antiqua]
 gi|145213023|gb|ABP42428.1| DNA polymerase III [Yersinia pestis Pestoides F]
 gi|167048094|gb|EDR59502.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|229678177|gb|EEO74283.1| DNA polymerase III alpha subunit [Yersinia pestis Nepal516]
 gi|262363938|gb|ACY60657.1| DNA polymerase III [Yersinia pestis D106004]
 gi|262364096|gb|ACY64432.1| DNA polymerase III [Yersinia pestis D182038]
 gi|270335034|gb|EFA45812.1| DNA polymerase III, alpha subunit [Yersinia pestis KIM D27]
 gi|294352515|gb|ADE66571.1| DNA polymerase III [Yersinia pestis Z176003]
 gi|320017589|gb|ADW01159.1| DNA polymerase III alpha subunit [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 1174

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 291/989 (29%), Positives = 468/989 (47%), Gaps = 150/989 (15%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           L V + +SL E AL   N + KIA D    A+   D+ N+ S +   Q+A    +  I G
Sbjct: 4   LMVRTDFSLGESALKAENAV-KIARDAGYTAVISADSMNIASVIPL-QRAAGDDMAVICG 61

Query: 73  CQLDI----DMQDNLKMTNQGKTPFPTVP-----SIVLLVSTAEGYQRLIELVSRMYLLD 123
            +L++      +   ++  + +    ++          L+   +GY+ + EL++     +
Sbjct: 62  VKLNVVDDPTYEHRARLAKESERCMESLVRDRSYCFTALIKNEQGYRDVCELMTLANKRE 121

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG---- 179
           Q     R+ L  L     +G I+L     G            V ++R   F K+ G    
Sbjct: 122 QFYFVPRLALDQLAAAYAKGNIILLTSDIG-----------SVFQRR--DFAKIIGTLVT 168

Query: 180 ----DRLYVNLQRHRG--YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
               D  Y  +  H    YD+    + +++A   ++  VA   + + + +D +  D+   
Sbjct: 169 AGGRDNFYSVVYPHPTPFYDQI-NVRAMKVASALKIEPVAFYPAYYEAVDDADIKDIAHM 227

Query: 234 VAHSTVVSQKDRPRVTP--DHYLKNRSEMV------SIFSDLP--EALENTVE--IARRC 281
           V ++  + Q  R R+    D+ +  R  ++      S+  D+P   A+ +T +  I   C
Sbjct: 228 VTNNIKIDQPHRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEAC 287

Query: 282 SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR--- 338
           ++      P LP+  +        +E   L   AVAGL  RL          A ++R   
Sbjct: 288 TWRWHELPPALPKMAD--------DEPATLMKLAVAGLRKRLTTKEFGYTPPASEHRVYV 339

Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            RL +E++ + R+ F GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+
Sbjct: 340 DRLKYEMDTLTRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPI 399

Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
           R  LLFERF+NP+R+ +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +AL
Sbjct: 400 RHGLLFERFINPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASAL 459

Query: 459 RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS-RFREARLADPSVDRL------ 511
           RD  R   +  +           D A     + + DDS    E R    S+D+       
Sbjct: 460 RDTARIYGVDAA-----------DMAVSKEFKNLEDDSLSLEELREQLASLDKYATKYPE 508

Query: 512 -LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
             + + KL+ L R    HAAG+++   PL +  P+  ++R +     F+ ++ E  GLIK
Sbjct: 509 AFKAACKLQSLMRGFGRHAAGMIVAGVPLVERTPV--ELRGNARCIAFDKRYCEAMGLIK 566

Query: 571 FDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
            D LGL TL LL  +  ++ +  G  ++L  IP DD +         T G+FQLES  MR
Sbjct: 567 LDVLGLATLDLLDSAKRYIKESTGEDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGPMR 626

Query: 630 QALE----GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK 683
           + L+    G++P   + ++A  +L+RPGPI + ++  Y +   G     S+HP++D +  
Sbjct: 627 KLLKDLGGGIEPMSFKTVVATTALFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDELTA 686

Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA------- 736
           ET GVI+YQEQ M   +LL+G++++EAD +R+A+GKK  E+M    E+F+  A       
Sbjct: 687 ETNGVILYQEQTMNATRLLAGFTMAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWIDV 746

Query: 737 ---------------------------------------------SKNGISKTIAVNIFE 751
                                                        S+ G+S+T A  I++
Sbjct: 747 EMEDGTTQRIHRAEHFKCEDGALRTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEIWD 806

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
              K   Y FNKSH  AY++ISYQ+ W+KTHYP EF AA++T+  ++  K +   +DA  
Sbjct: 807 AFEKNGAYQFNKSHPVAYSLISYQSMWLKTHYPAEFFAAALTILGED--KHQGLVKDALT 864

Query: 812 FNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEA--SADKPFDS 864
           + I ++PP VN      ++     G   +Y   +A+KG      + IM A       F+S
Sbjct: 865 YGIHVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGCQAIMRAREKVGGKFES 924

Query: 865 LEDFCSRVDSK--KLNRRVLESLVFAGAL 891
           LE F   V+ +    N RV ESL   GA 
Sbjct: 925 LEQFEEAVEKRACACNSRVRESLQKVGAF 953


>gi|170697435|ref|ZP_02888526.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria IOP40-10]
 gi|170137614|gb|EDT05851.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria IOP40-10]
          Length = 1049

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 300/1032 (29%), Positives = 487/1032 (47%), Gaps = 93/1032 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AA + 
Sbjct: 10   PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAANMP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    +   D            P + +   L    +GY  L E +S +  +   K +
Sbjct: 70   LIIGSHFRLTAADGA----------PAL-AFTALAMNRDGYGNLCEFIS-LGRMRGKKGT 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    ++        + T      I    F  + Q  + ++  F ++FGDR +V L  
Sbjct: 118  YRLAPLDVEHPEAPFTHLRTLPDCIAILSPDFPANEQRLDAQVEWFARVFGDRAWVALTL 177

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H R  D      V ++A  H +P+VAT+  L          DVL  +     V++     
Sbjct: 178  HARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGRPVTECGY-E 236

Query: 248  VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            + P  + +L++R  + +++     ALE TV +ARRC+F L               DD++ 
Sbjct: 237  LAPNAERHLRSRLRLANLYP--AGALEETVRVARRCTFSL---------------DDLKY 279

Query: 306  EEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            E  +EL           R +   G   R   G         D + +++ EL +IA +K+ 
Sbjct: 280  EYPDELVPAGTDATTYLREQTYIGARRRFPAGI------PIDVQAQIEHELQLIADLKYE 333

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFL V D +Q+A++  I +  GRGS A S   Y L +T++DP R S+LFERF++ +R  
Sbjct: 334  AYFLTVYDIVQFAREQGI-LCQGRGSAANSSVCYCLGVTEVDPSRQSMLFERFISKERNE 392

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EV++Y+  KYG +R A      + + ++ALR+ G+AL +  + VDR
Sbjct: 393  PPDIDVDFEHQRREEVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDPAIVDR 452

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSV---DRLLEISQKLEGLYRHASTHAAG 531
            + K      +    LQ      RF EA L DP      +    + +L G  RH S H+ G
Sbjct: 453  VAKQHHWFDSRADLLQ------RFAEAGL-DPEAPLNQQWAGFAAQLLGYPRHLSQHSGG 505

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             VI    L++LVP+      D  + Q++   IE  G++K D L L  L++++++LD +++
Sbjct: 506  FVISRGKLTRLVPVENAAMEDRSIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISE 565

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
             RG   +L  IP +D  TY +L    ++G+FQ+ES      L  ++P C  D++  V++ 
Sbjct: 566  KRGETFELEDIPAEDMATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIV 625

Query: 651  RPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+   +V+    R+ G E +      ++  L  T GV I+QEQVMQ+A L +G+S  
Sbjct: 626  RPGPVQGGMVHPFLRRRQGLEPVTFPSEGMEKALARTLGVPIFQEQVMQVAMLAAGFSAG 685

Query: 709  EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EAD LRRAM   K K  ++   ER +SG  + G  +  A +IF  +  F +YGF +SHAA
Sbjct: 686  EADQLRRAMAAWKRKGGLEPYHERLVSGMLERGYDREFAESIFAQIKGFGEYGFPESHAA 745

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++A++ Y +AW++ H P  FLAA +  +        +  QDAR+  ++++P  VN    D
Sbjct: 746  SFALLVYSSAWLRRHEPGVFLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWD 805

Query: 828  FKV------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
              +         R+ +SL  ++G+    A  +  A A +PF  + D   R    +L+R  
Sbjct: 806  SAIEGPTTSAPVRLGFSL--LRGMREDVAGRVELARAARPFVDVADLARRA---RLDRHD 860

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            L+ L  A AL           +SL    + A            ++    +GT  D   + 
Sbjct: 861  LQVLARANAL-----------RSLAGGNRRAALWLAAAAVPDRDLL---RGTERDD-AVP 905

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAM 1000
                 +       + R +GF    HPL + +  L    ++  ++ +AT+R G   R   +
Sbjct: 906  ALPQASEGKEIVTDYRAMGFTLGRHPLALLRDRLTLDRLQPADQ-LATLRSGQLARACGL 964

Query: 1001 VVSKQQKKTRKG 1012
            V  +Q+  T  G
Sbjct: 965  VTVRQRPGTANG 976


>gi|116048576|ref|YP_792625.1| error-prone DNA polymerase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115583797|gb|ABJ09812.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 1031

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 302/1028 (29%), Positives = 487/1028 (47%), Gaps = 86/1028 (8%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +  +L +  ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q
Sbjct: 1    MAAWLVRMSAYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQ 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A    +Q I+G ++ ++         QG       P +VLL    EGYQ L  L++R  
Sbjct: 61   AAREHQVQLIVGSEIRLE---------QG-------PKLVLLAEDLEGYQNLCRLITRGR 104

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 K   R+    LQ+    GL+ +           +  N  +  +++    ++ F  
Sbjct: 105  R-QADKGHYRLLREDLQQ-PLAGLLAI-----------WLPNDHE--DEQAAWLRERFPQ 149

Query: 181  RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            RL++ ++ HRG D   R  +++ LA    LP VA  +    +       D + A+ +   
Sbjct: 150  RLWLGVELHRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLP 209

Query: 240  VSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFI 296
            VS+     + P  + +L+    +  I+   P+AL   T++IA RC F L+      PR +
Sbjct: 210  VSEAG-AYLFPNGERHLRTLEALQGIY---PQALLAETLKIAERCRFDLEQLKYQYPREL 265

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                 D      + LR+    G+  R   GA AK       R++++ EL +IA + +  Y
Sbjct: 266  VPAGHD----PASWLRHLTEQGIARRWPNGASAK------VRKQIERELELIAELGYESY 315

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D + +A+   I +  GRGS A S   +AL IT++DP R +LLFERFL+ +R   P
Sbjct: 316  FLTVQDIVAFARGREI-LCQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPP 374

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  +RR+EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L 
Sbjct: 375  DIDVDFEHERREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLA 434

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
                       S QA + + R  EA      P + R+L ++ +L G  RH S H  G VI
Sbjct: 435  NCCGR-----WSDQAPSAE-RLEEAGFDPQSPILRRVLALTGELIGFPRHLSQHPGGFVI 488

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRG 593
             ++PL  LVP+     ++  V Q++   ++  GL+K D L L  L+ L++S D + A RG
Sbjct: 489  SEQPLDTLVPVENASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRG 548

Query: 594  VK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             K + ++ IP +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 549  GKRLSIASIPSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRP 608

Query: 653  GPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GPI  D +  Y  R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EA
Sbjct: 609  GPIQGDMVHPYLRRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEA 668

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            D LRR+M   K    ++  +ER   G   NG     A  IFE +  F  YGF +SHAA++
Sbjct: 669  DELRRSMAAWKRHGGLEHHRERLTRGMLANGYEADFAARIFEQIKGFGSYGFPESHAASF 728

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-- 827
            A+++Y ++W+K H P  F  A +           +  QDAR+  +Q  P  V     D  
Sbjct: 729  ALLTYASSWLKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCS 788

Query: 828  ---FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
               F      I   L  I+G     AR I +    +PF  + D   R    +L+ R LE 
Sbjct: 789  LEPFGQAQPAIRLGLRMIRGFREEDARRIEQVREAQPFLDVHDLGRRA---RLDARALEL 845

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  AGA           L+ L   +  A+W   +       +FA  +GT  ++ T+    
Sbjct: 846  LADAGA-----------LRGLAGHRHKARWAVAS-VEPQLPLFA--EGTVIEESTV-SLP 890

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
            + +      ++  +LG     HPL + +  L+    +   E      G  IR+A +VV +
Sbjct: 891  LPSRGEELLSDYALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVVGR 950

Query: 1005 QQKKTRKG 1012
            Q+ +T  G
Sbjct: 951  QRPQTASG 958


>gi|313105494|ref|ZP_07791765.1| hypothetical protein PA39016_000030000 [Pseudomonas aeruginosa 39016]
 gi|310878267|gb|EFQ36861.1| hypothetical protein PA39016_000030000 [Pseudomonas aeruginosa 39016]
          Length = 1024

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 301/1019 (29%), Positives = 484/1019 (47%), Gaps = 86/1019 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q A    +Q 
Sbjct: 3    AYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQAAREHQVQL 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G ++ ++         QG       P +VLL    EGYQ L  L++R       K   
Sbjct: 63   IVGSEIRLE---------QG-------PKLVLLAEDLEGYQNLCRLITRGRR-QADKGHY 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    LQ+    GL+ +           +  N  +  +++    ++ F  RL++ ++ H
Sbjct: 106  RLLREDLQQ-PLAGLLAI-----------WLPNDHE--DEQAAWLRERFPQRLWLGVELH 151

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            RG D   R  +++ LA    LP VA  +    +       D + A+ +   VS+     +
Sbjct: 152  RGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLPVSEAG-AYL 210

Query: 249  TP--DHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             P  + +L+    ++ I+   P+AL   T++IA RC F L+      PR +     D   
Sbjct: 211  FPNGERHLRTLEALLGIY---PQALLAETLKIAERCRFDLEQLKYQYPRELVPAGHD--- 264

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR+    G+  R   GA AK       R++++ EL +IA + +  YFL V D + 
Sbjct: 265  -PASWLRHLTEQGIARRWPNGASAK------VRKQIERELELIAELGYESYFLTVQDIVA 317

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   +AL IT++DP R +LLFERFL+ +R   PD D+DF  +
Sbjct: 318  FARGREI-LCQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPDIDVDFEHE 376

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L          
Sbjct: 377  RREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLANCCGR---- 432

Query: 486  PVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              S QA + + R  EA      P + R+L ++ +L G  RH S H  G VI ++PL  LV
Sbjct: 433  -WSDQAPSAE-RLEEAGFDPQSPILRRVLALTGELIGFPRHLSQHPGGFVISEQPLDTLV 490

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK-VDLSLI 601
            P+     ++  V Q++   ++  GL+K D L L  L+ L++S D + A RG K + ++ I
Sbjct: 491  PVENASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKRLSIASI 550

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D + 
Sbjct: 551  PSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQGDMVH 610

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EAD LRR+M  
Sbjct: 611  PYLRRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADELRRSMAA 670

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    ++  +ER   G   NG     A  IFE +  F  YGF +SHAA++A+++Y ++W
Sbjct: 671  WKRHGGLEHHRERLTRGMLANGYEADFAARIFEQIKGFGSYGFPESHAASFALLTYASSW 730

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-----FKVGDN 833
            +K H P  F  A +           +  QDAR+  +Q  P  V     D     F     
Sbjct: 731  LKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLEPFGQAQP 790

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I   L  I+G     AR I +    +PF  + D   R    +L+ R LE L  AGA   
Sbjct: 791  AIRLGLRMIRGFREEDARRIEQVREAQPFLDVHDLGRRA---RLDARALELLADAGA--- 844

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                    L+ L   +  A+W   +       +FA  +GT  ++ T+    + +      
Sbjct: 845  --------LRGLAGHRHKARWAVAS-VEPQLPLFA--EGTVIEESTV-SLPLPSRGEELL 892

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            ++  +LG     HPL + +  L+    +   E      G  IR+A +VV +Q+ +T  G
Sbjct: 893  SDYALLGTTLGPHPLKLLRGKLKARRCRDSRELAKLGHGRPIRVAGLVVGRQRPQTASG 951


>gi|161378129|ref|NP_745263.2| error-prone DNA polymerase [Pseudomonas putida KT2440]
          Length = 1026

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 297/1031 (28%), Positives = 472/1031 (45%), Gaps = 95/1031 (9%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  L   S++S   GA S + +  +       A+AITD   L   +   Q A    +
Sbjct: 3    TPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVHQL 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G   ++ + D               P +VLLV    GYQ L  L++R       ++
Sbjct: 63   RLIVGS--EVQLCDG--------------PKLVLLVENLTGYQNLCALITRAR-----RR 101

Query: 128  SVRICLSWLQE---IGTEGLIML-TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            + +      ++   +  +GL+ L     SG      +  S             +F +RL+
Sbjct: 102  AEKGAYQLFRDDLLLHHQGLLALWVAADSGDTATGAWLRS-------------VFAERLW 148

Query: 184  VNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +  HRG D   R  ++  LA    +  VA  +            D + A+     VS+
Sbjct: 149  LAVHLHRGSDDAVRLQRLRALAADVGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVSE 208

Query: 243  KDR-PRVTPDHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              R      + +L++++++  ++  DL   L  T+ IARRC F L       PR +  E 
Sbjct: 209  AGRFLFANGERHLRSQAQLAELYPLDL---LAETLVIARRCQFDLSELNYQYPRELVPE- 264

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                    + LR     G+ +R   G   K       R  L  EL +I  + +  YFL V
Sbjct: 265  ---GHTPASWLRELCEQGMPLRWPDGPSGK------VRDVLAKELGLIEELGYESYFLTV 315

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +A+   I +  GRGS A SV  + L IT++DP++  LLFERFL+ +R   PD D+
Sbjct: 316  HDIVAFARSQRI-LCQGRGSAANSVVCFVLGITELDPMKHHLLFERFLSRERNEPPDIDV 374

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  DRR+EVI+YV  +YG  R A      +  A  A+RDV RAL +P  QVD L K   
Sbjct: 375  DFEHDRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARALGLPADQVDALAKCCG 434

Query: 481  NDPAHPVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                       I DD R  EA      PS+ R+L ++ +L G  RH S H  G VI  +P
Sbjct: 435  R------WSDRIPDDQRLAEAGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQP 488

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597
            L QLVP+      +  V Q++   ++  GL+K D L L  L+ L++  D L   RG  + 
Sbjct: 489  LDQLVPVENAAMPERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDQLQHHRGRHLT 548

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            L+ IP +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 549  LATIPSEDPATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAIVRPGPIQG 608

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D +  Y  R+  +E +    P +  + + T GV ++QEQVM++A + + Y+  EAD LRR
Sbjct: 609  DMVHPYLRRRLKQEPVTYPSPQLKEVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRR 668

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +M   K    ++  +ER + G  +NG +   A  IFE +  F  YGF +SHAA++A++ Y
Sbjct: 669  SMAAWKRHGGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHAASFALLCY 728

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---- 830
             ++W+K H P  F  A +           +  Q+AR+  I++ P  V     D  +    
Sbjct: 729  ASSWLKCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPDA 788

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             G   I   L  ++G+    A+ + +A + +P+ ++ED C R     L+ R    L   G
Sbjct: 789  EGTLAIRMGLRLVRGLAEADAKRVQQARSQRPWRNVEDLCLRAG---LDARARARLADGG 845

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL      R Q           A+W +         +FA  +    + + L   +V    
Sbjct: 846  ALRALASDRHQ-----------ARW-QVAAVQPQLPLFADVQALPEEPVQLPVPTVGED- 892

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 + + LG     HPL + +  LR +G +   E      G+NI +A +VV +Q+ +T
Sbjct: 893  --LMADYQTLGTTLGPHPLALLRARLRALGCRSSSELQGVEHGDNIAVAGLVVGRQRPQT 950

Query: 1010 RKGSRIGWVTF 1020
              G     VTF
Sbjct: 951  ASG-----VTF 956


>gi|165939425|ref|ZP_02227972.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|167422789|ref|ZP_02314542.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167470030|ref|ZP_02334734.1| DNA polymerase III [Yersinia pestis FV-1]
 gi|229897817|ref|ZP_04512972.1| DNA polymerase III alpha subunit [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229900269|ref|ZP_04515404.1| DNA polymerase III alpha subunit [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|165912613|gb|EDR31243.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166958282|gb|EDR55303.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|229686628|gb|EEO78709.1| DNA polymerase III alpha subunit [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229693398|gb|EEO83448.1| DNA polymerase III alpha subunit [Yersinia pestis biovar Orientalis
           str. PEXU2]
          Length = 1037

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 291/989 (29%), Positives = 468/989 (47%), Gaps = 150/989 (15%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           L V + +SL E AL   N + KIA D    A+   D+ N+ S +   Q+A    +  I G
Sbjct: 4   LMVRTDFSLGESALKAENAV-KIARDAGYTAVISADSMNIASVIPL-QRAAGDDMAVICG 61

Query: 73  CQLDI----DMQDNLKMTNQGKTPFPTVP-----SIVLLVSTAEGYQRLIELVSRMYLLD 123
            +L++      +   ++  + +    ++          L+   +GY+ + EL++     +
Sbjct: 62  VKLNVVDDPTYEHRARLAKESERCMESLVRDRSYCFTALIKNEQGYRDVCELMTLANKRE 121

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG---- 179
           Q     R+ L  L     +G I+L     G            V ++R   F K+ G    
Sbjct: 122 QFYFVPRLALDQLAAAYAKGNIILLTSDIG-----------SVFQRR--DFAKIIGTLVT 168

Query: 180 ----DRLYVNLQRHRG--YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
               D  Y  +  H    YD+    + +++A   ++  VA   + + + +D +  D+   
Sbjct: 169 AGGRDNFYSVVYPHPTPFYDQI-NVRAMKVASALKIEPVAFYPAYYEAVDDADIKDIAHM 227

Query: 234 VAHSTVVSQKDRPRVTP--DHYLKNRSEMV------SIFSDLP--EALENTVE--IARRC 281
           V ++  + Q  R R+    D+ +  R  ++      S+  D+P   A+ +T +  I   C
Sbjct: 228 VTNNIKIDQPHRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEAC 287

Query: 282 SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR--- 338
           ++      P LP+  +        +E   L   AVAGL  RL          A ++R   
Sbjct: 288 TWRWHELPPALPKMAD--------DEPATLMKLAVAGLRKRLTTKEFGYTPPASEHRVYV 339

Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            RL +E++ + R+ F GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+
Sbjct: 340 DRLKYEMDTLTRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPI 399

Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
           R  LLFERF+NP+R+ +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +AL
Sbjct: 400 RHGLLFERFINPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASAL 459

Query: 459 RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS-RFREARLADPSVDRL------ 511
           RD  R   +  +           D A     + + DDS    E R    S+D+       
Sbjct: 460 RDTARIYGVDAA-----------DMAVSKEFKNLEDDSLSLEELREQLASLDKYATKYPE 508

Query: 512 -LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
             + + KL+ L R    HAAG+++   PL +  P+  ++R +     F+ ++ E  GLIK
Sbjct: 509 AFKAACKLQSLMRGFGRHAAGMIVAGVPLVERTPV--ELRGNARCIAFDKRYCEAMGLIK 566

Query: 571 FDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
            D LGL TL LL  +  ++ +  G  ++L  IP DD +         T G+FQLES  MR
Sbjct: 567 LDVLGLATLDLLDSAKRYIKESTGEDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGPMR 626

Query: 630 QALE----GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK 683
           + L+    G++P   + ++A  +L+RPGPI + ++  Y +   G     S+HP++D +  
Sbjct: 627 KLLKDLGGGIEPMSFKTVVATTALFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDELTA 686

Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA------- 736
           ET GVI+YQEQ M   +LL+G++++EAD +R+A+GKK  E+M    E+F+  A       
Sbjct: 687 ETNGVILYQEQTMNATRLLAGFTMAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWIDV 746

Query: 737 ---------------------------------------------SKNGISKTIAVNIFE 751
                                                        S+ G+S+T A  I++
Sbjct: 747 EMEDGTTQRIHRAEHFKCEDGALRTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEIWD 806

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
              K   Y FNKSH  AY++ISYQ+ W+KTHYP EF AA++T+  ++  K +   +DA  
Sbjct: 807 AFEKNGAYQFNKSHPVAYSLISYQSMWLKTHYPAEFFAAALTILGED--KHQGLVKDALT 864

Query: 812 FNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEA--SADKPFDS 864
           + I ++PP VN      ++     G   +Y   +A+KG      + IM A       F+S
Sbjct: 865 YGIHVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGCQAIMRAREKVGGKFES 924

Query: 865 LEDFCSRVDSK--KLNRRVLESLVFAGAL 891
           LE F   V+ +    N RV ESL   GA 
Sbjct: 925 LEQFEEAVEKRACACNSRVRESLQKVGAF 953


>gi|71151833|sp|Q88I82|DNAE2_PSEPK RecName: Full=Error-prone DNA polymerase
 gi|24984742|gb|AAN68727.1|AE016504_10 DNA polymerase III, alpha subunit, putative [Pseudomonas putida
            KT2440]
          Length = 1033

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 297/1031 (28%), Positives = 472/1031 (45%), Gaps = 95/1031 (9%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  L   S++S   GA S + +  +       A+AITD   L   +   Q A    +
Sbjct: 10   TPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVHQL 69

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G   ++ + D               P +VLLV    GYQ L  L++R       ++
Sbjct: 70   RLIVGS--EVQLCDG--------------PKLVLLVENLTGYQNLCALITRAR-----RR 108

Query: 128  SVRICLSWLQE---IGTEGLIML-TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            + +      ++   +  +GL+ L     SG      +  S             +F +RL+
Sbjct: 109  AEKGAYQLFRDDLLLHHQGLLALWVAADSGDTATGAWLRS-------------VFAERLW 155

Query: 184  VNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +  HRG D   R  ++  LA    +  VA  +            D + A+     VS+
Sbjct: 156  LAVHLHRGSDDAVRLQRLRALAADVGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVSE 215

Query: 243  KDR-PRVTPDHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              R      + +L++++++  ++  DL   L  T+ IARRC F L       PR +  E 
Sbjct: 216  AGRFLFANGERHLRSQAQLAELYPLDL---LAETLVIARRCQFDLSELNYQYPRELVPE- 271

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                    + LR     G+ +R   G   K       R  L  EL +I  + +  YFL V
Sbjct: 272  ---GHTPASWLRELCEQGMPLRWPDGPSGK------VRDVLAKELGLIEELGYESYFLTV 322

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +A+   I +  GRGS A SV  + L IT++DP++  LLFERFL+ +R   PD D+
Sbjct: 323  HDIVAFARSQRI-LCQGRGSAANSVVCFVLGITELDPMKHHLLFERFLSRERNEPPDIDV 381

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  DRR+EVI+YV  +YG  R A      +  A  A+RDV RAL +P  QVD L K   
Sbjct: 382  DFEHDRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARALGLPADQVDALAKCCG 441

Query: 481  NDPAHPVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                       I DD R  EA      PS+ R+L ++ +L G  RH S H  G VI  +P
Sbjct: 442  R------WSDRIPDDQRLAEAGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQP 495

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597
            L QLVP+      +  V Q++   ++  GL+K D L L  L+ L++  D L   RG  + 
Sbjct: 496  LDQLVPVENAAMPERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDQLQHHRGRHLT 555

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            L+ IP +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 556  LATIPSEDPATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAIVRPGPIQG 615

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D +  Y  R+  +E +    P +  + + T GV ++QEQVM++A + + Y+  EAD LRR
Sbjct: 616  DMVHPYLRRRLKQEPVTYPSPQLKEVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRR 675

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +M   K    ++  +ER + G  +NG +   A  IFE +  F  YGF +SHAA++A++ Y
Sbjct: 676  SMAAWKRHGGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHAASFALLCY 735

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---- 830
             ++W+K H P  F  A +           +  Q+AR+  I++ P  V     D  +    
Sbjct: 736  ASSWLKCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPDA 795

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             G   I   L  ++G+    A+ + +A + +P+ ++ED C R     L+ R    L   G
Sbjct: 796  EGTLAIRMGLRLVRGLAEADAKRVQQARSQRPWRNVEDLCLRAG---LDARARARLADGG 852

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL      R Q           A+W +         +FA  +    + + L   +V    
Sbjct: 853  ALRALASDRHQ-----------ARW-QVAAVQPQLPLFADVQALPEEPVQLPVPTVGED- 899

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 + + LG     HPL + +  LR +G +   E      G+NI +A +VV +Q+ +T
Sbjct: 900  --LMADYQTLGTTLGPHPLALLRARLRALGCRSSSELQGVEHGDNIAVAGLVVGRQRPQT 957

Query: 1010 RKGSRIGWVTF 1020
              G     VTF
Sbjct: 958  ASG-----VTF 963


>gi|296390977|ref|ZP_06880452.1| error-prone DNA polymerase [Pseudomonas aeruginosa PAb1]
          Length = 1024

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 300/1019 (29%), Positives = 483/1019 (47%), Gaps = 86/1019 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q A    +Q 
Sbjct: 3    AYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQAAREHQVQL 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G ++ ++         QG       P +VLL    EGYQ L  L++R       K   
Sbjct: 63   IVGSEIRLE---------QG-------PKLVLLAEDLEGYQNLCRLITRGRR-QADKGHY 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    LQ+    GL+ +             +  +   ++++   ++ F  RL++ ++ H
Sbjct: 106  RLLREDLQQ-PLAGLLAI-------------WLPNDHGDEQVAWLRERFPQRLWLGVELH 151

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            RG D   R  +++ LA    LP VA  +    +       D + A+ +   VS+     +
Sbjct: 152  RGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLPVSEAG-AYL 210

Query: 249  TP--DHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             P  + +L+    +  I+   P+AL   T++IA RC F L+      PR +     D   
Sbjct: 211  FPNGERHLRTLEALQGIY---PQALLAETLKIAERCRFDLEQLKYQYPRELVPAGHD--- 264

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR+    G+  R   GA AK       R++++ EL +IA + +  YFL V D + 
Sbjct: 265  -PASWLRHLTEQGIARRWPNGASAK------VRKQIERELELIAELGYESYFLTVQDIVA 317

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   +AL IT++DP R +LLFERFL+ +R   PD D+DF  +
Sbjct: 318  FARSREI-LCQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPDIDVDFEHE 376

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L          
Sbjct: 377  RREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLANCCGR---- 432

Query: 486  PVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              S QA + + R  EA      P + R+L ++ +L G  RH S H  G VI ++PL  LV
Sbjct: 433  -WSDQAPSAE-RLEEAGFDPQSPILRRVLALTGELIGFPRHLSQHPGGFVISEQPLDTLV 490

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK-VDLSLI 601
            P+     ++  V Q++   ++  GL+K D L L  L+ L++S D + A RG K + ++ I
Sbjct: 491  PVENASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKRLSIASI 550

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D + 
Sbjct: 551  PSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQGDMVH 610

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EAD LRR+M  
Sbjct: 611  PYLRRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADELRRSMAA 670

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    ++  +ER   G   NG     A  IFE +  F  YGF +SHAA++A+++Y ++W
Sbjct: 671  WKRHGGLEHHRERLTRGMLANGYEADFAARIFEQIKGFGSYGFPESHAASFALLTYASSW 730

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-----FKVGDN 833
            +K H P  F  A +           +  QDAR+  +Q  P  V     D     F     
Sbjct: 731  LKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLESFGQAQP 790

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I   L  I+G     AR I +    +PF  + D   R    +L+ R LE L  AGA   
Sbjct: 791  AIRLGLRMIRGFREEDARRIEQVREAQPFLDVHDLGRRA---RLDARALELLADAGA--- 844

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                    L+ L   +  A+W   +       +FA  +GT  ++ T+    + +      
Sbjct: 845  --------LRGLAGHRHKARWAVAS-VEPQLPLFA--EGTVIEESTV-SLPLPSRGEELL 892

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            ++  +LG     HPL + +  L+    +   E      G  IR+A +VV +Q+ +T  G
Sbjct: 893  SDYALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVVGRQRPQTASG 951


>gi|307311805|ref|ZP_07591444.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
 gi|306899546|gb|EFN30176.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
          Length = 1087

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 295/1026 (28%), Positives = 482/1026 (46%), Gaps = 88/1026 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV + +S L  A S   +          A+ + D N+L   +   + + A G++ +
Sbjct: 3    YAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASRATGLRLV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+LD  +QD +              SI++  +    Y RL    +R+  L +G+    
Sbjct: 63   VGCRLD--LQDGM--------------SILVYPTDRAAYSRL----TRLLTLGKGRGGKA 102

Query: 131  ICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             C+    ++    EGLI    G   P D A      +V   +L    ++FGDR YV+L  
Sbjct: 103  NCIIHFDDVALYAEGLI----GILVP-DLA-----DEVCAVQLRKIAEVFGDRAYVSLCL 152

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK--DR 245
            R R  D+ +  ++  LA  H +  + TN+ LF      +  DV+  +     +     +R
Sbjct: 153  RRRPNDQLQLHELTNLAVKHRVKTIVTNDVLFHEHGRRQLQDVVTCIRTGMTIDDVGFER 212

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R   D YLK   EM  +F   PEAL  T+EI  RC F L+      P    +E   +  
Sbjct: 213  ER-HADRYLKPPEEMARLFPAYPEALARTMEIVERCRFSLEELVYQYP----EEALILGM 267

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L++    G+  R  +G      H +   + +  EL +I  MK++ YFL V   ++
Sbjct: 268  TAQQSLQHYTWEGVRARYPEGLPT---HVE---KTIRHELALIETMKYAPYFLTVFSIVR 321

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +
Sbjct: 322  YARSQGI-LCQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHE 380

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+++   YGH++ A   T    +AK A+RDVG+AL +P   +  L   I      
Sbjct: 381  RREEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALDLPEDLIRTLSSGI------ 434

Query: 486  PVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              S      + + RE  L +P   RL   L ++Q+L G  RH S H  G V+    L  L
Sbjct: 435  -WSWSETVGERQVRELGL-NPDDRRLTLTLRLAQQLMGAPRHLSQHPGGFVLTHDRLDDL 492

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+     +D  V +++   IE    +K D L L  LT + K+   +++ +   +DL+ I
Sbjct: 493  VPIEPATMADRQVIEWDKDDIEALKFMKVDVLALGMLTCMAKAFALISEHKHEDIDLATI 552

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY ++    TLG FQ+ES      L  M+P    D++  V++ RPGPI  D + 
Sbjct: 553  PQEDRATYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAIVRPGPIQGDMVH 612

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+ GKEK+    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M  
Sbjct: 613  PYLRRREGKEKVEYPTPELEAVLHKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMAT 672

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    + + K++ ++G  +NG +K  A   F  L  F  YGF +SHAA++A+I+Y + +
Sbjct: 673  FKFTGGVSRFKDKLVNGMIRNGYTKEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNY 732

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GD 832
            +K ++P  F AA +  +        +  +DAR+  +++ P  +N    D  +      G 
Sbjct: 733  IKCYFPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSRWDCMLEPIDGSGG 792

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            + +   +  ++G+ T  A  I+ A AD+PF S++D   R          + SLV     D
Sbjct: 793  HAVRLGMRLVRGLATADAARIVAARADEPFTSVDDMWRRSGVP------VASLVELAEAD 846

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
             F       L SL   ++ A W  K   ++   +F       +  I  E+   E    + 
Sbjct: 847  AF-------LPSLSLERRDALWAIKALRDEPLPLFTAAADREARAIA-EQEEPEVELRQM 898

Query: 953  ENEQRVL------GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
             + Q V+      G     HPL   +  L K  I    +++    G  +  A +V+ +Q+
Sbjct: 899  TDGQNVVEDYSHTGLTLREHPLRFMRDDLAKRRIVTCAQAMTAHDGQWLMAAGLVLVRQR 958

Query: 1007 KKTRKG 1012
              + KG
Sbjct: 959  PGSAKG 964


>gi|124263148|ref|YP_001023618.1| DNA polymerase III, alpha subunit [Methylibium petroleiphilum PM1]
 gi|124262394|gb|ABM97383.1| error-prone DNA polymerase, DnaE-like protein [Methylibium
            petroleiphilum PM1]
          Length = 1033

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 289/1022 (28%), Positives = 478/1022 (46%), Gaps = 86/1022 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L+  S++S L GA     ++++       A+AITD  ++   +     A   G+ 
Sbjct: 7    PAYAELRCLSAFSFLRGASMPEELVERAKELGYSALAITDECSVAGVVRAHVTAKEQGLP 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG Q  ++             PF    ++V+L  T +GY  L E ++++ +    K +
Sbjct: 67   LIIGSQFQLE-----------DAPF----TLVVLAQTLQGYGNLCEFITKLRMASP-KGT 110

Query: 129  VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             R+ L+  L     E L+++        DR  F        + +LT    F  R ++ ++
Sbjct: 111  YRLQLTDVLPGPLAECLVLVAP------DRTAFPEELLKVARWMLTH---FSGRCWLAVE 161

Query: 188  RHRGYDRYRESQVVQLAYTHEL---PLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQK 243
              R  D   E  + +L    EL   PLVAT +            DV+ A      +    
Sbjct: 162  LLRLLDD--EMWLHKLREVSELTAIPLVATGDVHVHVRSRKALQDVMTATRVGKPLTGCG 219

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-----QVHAPILPRFIEK 298
               +   + +L+ R  +   + +  E L  T  +A  CSF L     Q  A ++P     
Sbjct: 220  GALQPNAERHLRTRLRLAQTYPE--ELLTETSRVASLCSFSLDELKYQYPAEVVP----- 272

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                + +   + LR     G   R  +G  AK       + +++ EL +I+ + +  YFL
Sbjct: 273  ----VGETASSFLRRLTYEGAGRRWPEGMQAK------VQTQIEHELKLISELGYEHYFL 322

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
             VAD + +A+  +I +  GRGS A SV  Y L +T++DP R S+LFERF++ +R   PD 
Sbjct: 323  TVADIVNFARSRHI-LCQGRGSAANSVVCYCLGVTEVDPARMSVLFERFISKERNEPPDI 381

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF  +RR+EVI Y+  KYG  R     T  S + K+A+RDVG+AL      VDR+ K 
Sbjct: 382  DVDFEHERREEVIHYLYGKYGRHRAGLTATVISYRPKSAIRDVGKALGFDLETVDRVAKN 441

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                    V  + +A+     E    D +V +LL ++ +L G+ RH S H  G V+   P
Sbjct: 442  HMWFEGRQVLTERMAEVGLNPE----DLAVKQLLALTGQLIGMPRHLSQHVGGFVLTKGP 497

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVD 597
            LS++VP+      D  V +++   ++  GL+K D L L  LT ++KSL+F+ QR G + +
Sbjct: 498  LSRMVPIENAAMEDRTVIEWDKDDLDALGLLKVDVLALGMLTAIRKSLEFIGQRKGYRFE 557

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP +D ETY +++   T+G+FQ+ES      L  M+P+C  D++  V++ RPGPI  
Sbjct: 558  MQDIPAEDPETYRMISKADTVGVFQIESRAQMSMLPRMKPECFYDLVIEVAIVRPGPIQG 617

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  Y NR+ GKE +V     +   L  T GV ++QEQVMQ+A L +G++  EAD LRR
Sbjct: 618  GMVHPYLNRRQGKEPVVYPSEALKEALGRTLGVPVFQEQVMQVAILAAGFTPGEADQLRR 677

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +M   K K  +D+   R + G +  G  K  A  IF+ +  F++YGF +SHAA++A++ Y
Sbjct: 678  SMAAWKRKGGLDQYYSRIVDGMTARGYEKAFAEQIFQQIHGFSEYGFPESHAASFALLVY 737

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-- 832
             + W+K H+P EFLAA +  +        +  QDA++  + + P  V     D  +    
Sbjct: 738  ASCWIKCHHPAEFLAAMLNSQPLGFYTPSQLVQDAKRHGVDVRPVDVMYSDWDCTLEGLP 797

Query: 833  --NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                +   L  + G+   + + ++ A  + PFD+ ED   R     L +  ++ L  A A
Sbjct: 798  HPPAVRLGLRQVSGLKAESVQRLVAARQEAPFDNAEDLARRA---ALEQHEMKLLAAADA 854

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            L      R Q +     ++   + +     +  E      +    ++I  +  S      
Sbjct: 855  LMSLSGHRRQQVWDAAALRSTPKLLRDAPVD--EEFLELPEAPEGEEIVWDYAST----- 907

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                     G     HPL + +P L    +   E+      G ++    +V  +QQ  T 
Sbjct: 908  ---------GLTLRRHPLALLRPQLEARRLLTAEQLDRLPNGRHVGTCGIVTLRQQPDTA 958

Query: 1011 KG 1012
             G
Sbjct: 959  NG 960


>gi|107100135|ref|ZP_01364053.1| hypothetical protein PaerPA_01001156 [Pseudomonas aeruginosa PACS2]
          Length = 1024

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 299/1019 (29%), Positives = 481/1019 (47%), Gaps = 86/1019 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q A    +Q 
Sbjct: 3    AYAELHCLSNFSFQRGASSATELFARAARLGYRALAITDECSLAGIVRAWQAAREHQVQL 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G ++ ++         QG       P +VLL    EGYQ L  L++R       K   
Sbjct: 63   IVGSEIRLE---------QG-------PKLVLLAEDLEGYQNLCRLITRGRR-QADKGHY 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    LQ+    GL+ +             +  +   +++    ++ F  RL++ ++ H
Sbjct: 106  RLLREDLQQ-PLAGLLAI-------------WLPNDHGDEQAAWLRERFPQRLWLGVELH 151

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            RG D   R  +++ LA    LP VA  +    +       D + A+ +   VS+     +
Sbjct: 152  RGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLPVSEAG-AYL 210

Query: 249  TP--DHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             P  + +L+    +  I+   P+AL   T++IA RC F L+      PR +     D   
Sbjct: 211  FPNGERHLRTLEALQGIY---PQALLAETLKIAERCRFDLEQLKYQYPRELVPAGHD--- 264

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR+    G+  R   GA AK       R++++ EL +IA + +  YFL V D + 
Sbjct: 265  -PASWLRHLTEQGIARRWPNGASAK------VRKQIERELELIAELGYESYFLTVQDIVA 317

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   +AL IT++DP R +LLFERFL+ +R   PD D+DF  +
Sbjct: 318  FARGRKI-LCQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPDIDVDFEHE 376

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L          
Sbjct: 377  RREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLANCCGR---- 432

Query: 486  PVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              S QA + + R  EA      P + R+L ++ +L G  RH S H  G VI ++PL  LV
Sbjct: 433  -WSDQAPSAE-RLEEAGFDPQSPILRRVLALTDELIGFPRHLSQHPGGFVISEQPLDTLV 490

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK-VDLSLI 601
            P+     ++  V Q++   ++  GL+K D L L  L+ L++S D + A RG K + ++ I
Sbjct: 491  PVENASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKRLSIASI 550

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D + 
Sbjct: 551  PSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQGDMVH 610

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EAD LRR+M  
Sbjct: 611  PYLRRRNGEEPVAYPSAELEKVFERTLGVPLFQEQVMELAIVAADYTPGEADELRRSMAA 670

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    ++  +ER   G    G     A  IFE +  F  YGF +SHAA++A+++Y ++W
Sbjct: 671  WKRHGGLEHHRERLTRGMLAKGYEADFAARIFEQIKGFGSYGFPESHAASFALLTYASSW 730

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-----FKVGDN 833
            +K H P  F  A +           +  QDAR+  +Q  P  V     D     F     
Sbjct: 731  LKRHEPAAFACALINSWPMGFYSPDQLLQDARRHTLQTRPVDVRHSGWDCSLESFGQAQP 790

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I   L  I+G     AR I +    +PF  + D   R    +L+ R LE L  AGA   
Sbjct: 791  AIRLGLRMIRGFREEDARRIEQVREAQPFLDVHDLGRRA---RLDARALELLADAGA--- 844

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                    L+ L   +  A+W   +       +FA  +GT  ++ T+    + +      
Sbjct: 845  --------LRGLAGHRHKARWAVAS-VEPQLPLFA--EGTVIEETTV-SLPLPSRGEELL 892

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            ++  +LG     HPL + +  L+    +   E      G  IR+A +VV +Q+ +T  G
Sbjct: 893  SDYALLGTTLGPHPLKLLRGQLKACRCRDSRELAKLGHGRPIRVAGLVVGRQRPQTASG 951


>gi|297520197|ref|ZP_06938583.1| DNA polymerase III subunit alpha [Escherichia coli OP50]
          Length = 490

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/481 (42%), Positives = 291/481 (60%), Gaps = 21/481 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P FVHL+VHS  S+++G      ++ K AA   PA+AITD  NL   ++F      AGI+
Sbjct: 4   PRFVHLRVHSDCSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PI+G   D ++Q +L            +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64  PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R
Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172

Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  +       V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR
Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287

Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484 A 484
            
Sbjct: 468 G 468


>gi|284031892|ref|YP_003381823.1| DNA polymerase III subunit alpha [Kribbella flavida DSM 17836]
 gi|283811185|gb|ADB33024.1| DNA polymerase III, alpha subunit [Kribbella flavida DSM 17836]
          Length = 1145

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 287/963 (29%), Positives = 449/963 (46%), Gaps = 119/963 (12%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L VHS++S L+GA S   ++++       AIA+TD +  + A  F++ A A  +  +
Sbjct: 66  YAELHVHSNFSFLDGASSPEQLVEEAVRHGLHAIALTDHDGFYGAARFAETADAYAMPTV 125

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L + +        Q     P    +++L    EGY RL   ++  +L    K    
Sbjct: 126 YGAELSLGLPGP-----QNGVADPDGSHLLVLAEGKEGYHRLAGAMTEAHLAGGEKGRPV 180

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFG-DRLYV 184
             L  L   G +  ++LTG   G + +A          +  A + L     LFG DR+ V
Sbjct: 181 YDLEELAARGRDHWLILTGCRKGAVRQALTTASSPAAGAAAARRELDRLTALFGRDRVVV 240

Query: 185 NLQRHRGYDRYRESQVVQLAYTHE-----------LPLVATNNSLFLSEEDYEAHDVLMA 233
            L  HR          + L+ TH            LP VAT N  +    D+     L A
Sbjct: 241 ELIDHR----------MPLSSTHNQALADLAAAAGLPTVATGNVHYAQPRDHRLASALAA 290

Query: 234 VAHSTVVSQKDR--PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
           V     + + D   P   P  +L + +EM   F + P A+  +VE+A + +F L+   P 
Sbjct: 291 VRARRSLDEMDGWLP-AGPAAFLHSGAEMAMKFRNFPGAVARSVELADQLAFRLRAAQPR 349

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR----QRLDFELNV 347
           LP+ I+      Q           +  L   + +GA A+ Y  +D R    QRL+ EL+V
Sbjct: 350 LPK-IDVPAGLTQ-----------MGWLRQLVFEGA-AERYGTRDQRPDAYQRLERELDV 396

Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
           I +  F GYFLIV D +++A+++ I +  GRGS A S   Y L +T +D + + L FERF
Sbjct: 397 IEQRDFPGYFLIVWDMVRYAREHGI-LCQGRGSAANSAVVYCLGVTAVDSILYGLPFERF 455

Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
           L   R   PD D+DF  DRR+EVI+Y+  KYG    AQ+    S + K A+RD+ +AL  
Sbjct: 456 LAATRSEEPDIDVDFDSDRREEVIQYMYGKYGRRNAAQVANVISYRPKMAVRDMAKALGY 515

Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL-LEISQKLEGLYRHAS 526
              Q D   K +               D    +    D  +  L +E++ +L    RH  
Sbjct: 516 STGQQDAWSKQV---------------DGWSADLSSTDHDIPPLVVEMATELLKAPRHLG 560

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            H+ G+V+ ++P+ ++VP+         V Q++       GL+KFD LGL  L  +Q  +
Sbjct: 561 IHSGGMVLTEQPVGEVVPIEHARMEKRTVLQWDKDDCAYMGLVKFDMLGLGMLAAIQYCI 620

Query: 587 DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
           D +A R G +  L  IP ++   Y  L    ++G+FQ+ES      L  ++P    D+  
Sbjct: 621 DLVADRLGERWQLHTIPKEEQGVYDQLCRADSVGVFQVESRAQMATLPRLRPRRFYDLAC 680

Query: 646 LVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            ++L RPGPI    V+    R  G+E I   HPL++P+L+ T+GV ++QEQ+MQ+A  + 
Sbjct: 681 EIALIRPGPIQGGAVHPFVRRMTGQEPITYPHPLLEPVLERTKGVPLFQEQLMQMAMAIG 740

Query: 704 GYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
           G    EAD+LRRAMG K+  E++   K +  +G + NG++  +A +I+  +  FA++GF 
Sbjct: 741 GIDGDEADLLRRAMGSKRGIEKISSLKTKLYAGMATNGLTGDVADDIYARIEAFANFGFA 800

Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP--- 819
           +SH+ ++A++ Y + W + HYP  FLAA +  +       +    DAR+  +++  P   
Sbjct: 801 ESHSISFALLVYASTWFRLHYPAAFLAALLRAQPMGFYSPQSLVADARRHGVEVRRPDLQ 860

Query: 820 ---------------------------SVNTP-----------CVDFKV-GDNRIYYSLA 840
                                      +V  P           C D +  G   +   LA
Sbjct: 861 RSGVHALLEDLDDRRPARPTGMDSCLATVQPPIGPFDPDAPDTCADHRRDGAFAVRLGLA 920

Query: 841 AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
           A+K +GTT A  I+E      P+  L D   R     L    LE+L  AGA DCFG  R 
Sbjct: 921 AVKSIGTTMAETIVEQRELHGPYADLADLARRT---GLTASQLEALATAGAFDCFGIDRR 977

Query: 900 QLL 902
           Q L
Sbjct: 978 QAL 980


>gi|119716129|ref|YP_923094.1| error-prone DNA polymerase [Nocardioides sp. JS614]
 gi|119536790|gb|ABL81407.1| error-prone DNA polymerase, DnaE-like protein [Nocardioides sp.
            JS614]
          Length = 1145

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 306/1065 (28%), Positives = 477/1065 (44%), Gaps = 103/1065 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-----CAA 65
            +  L  HSS+S L+GA   ++++ +        +AITD +  + A  F++ A        
Sbjct: 53   YAELHCHSSFSFLDGASGPDHLVLEALRLGLHGLAITDHDGFYGAPLFAETAQLHATNEQ 112

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
             ++   G +L + +        Q     P    +++L    EGY RL   ++   L    
Sbjct: 113  SLKTAYGAELSLGL-----TRPQHGVADPEGGHLLVLARGVEGYHRLAGAITDAQLRGDE 167

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184
            K      L+ L E G +  ++LTG   G + RA   +    A   L     LFG D + V
Sbjct: 168  KGRPVYDLAELAERGRDHWLVLTGCRKGAVRRALLEHGPVAAAAELDRLTALFGHDNVVV 227

Query: 185  NLQRHRGY--DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVS 241
             L  H GY  D      +  LA  H L +VATNN      E +   D + AV A  ++  
Sbjct: 228  ELIDH-GYPTDSAHNDLLAALAADHGLRVVATNNVHHARPEQHRVADAMAAVRARRSLAE 286

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                   +    L++  EMV  F+  P A+  +VE+A    F LQ   P LP    K+  
Sbjct: 287  MDGWLPASGMACLRSGEEMVRRFARYPGAVARSVELADEIVFDLQKATPRLP----KDGI 342

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                     LR     G   R A G +         R  ++ EL +IA   F GYF+IV 
Sbjct: 343  PAGHTPSTWLRELTERGFAQRYAGGPLET-----RARASVEHELRIIAEKDFDGYFVIVH 397

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A+   I +  GRGS A S   YAL IT IDP+ + L FERF++  R   PD D+D
Sbjct: 398  DIVAFARSRGI-LCQGRGSAASSAVCYALGITAIDPVFYRLPFERFISQHRDEEPDIDVD 456

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F   RR+EVI++V  +YG    AQ+      + K A+RD  +AL     Q D   K +  
Sbjct: 457  FDAGRREEVIQWVYERYGRHNAAQVANVVGYRPKMAVRDAAKALGHSPGQQDAWSKQV-- 514

Query: 482  DPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  S   +A  D     A L  P+   ++ ++    G  RH   H+ G+V+ +RP+ 
Sbjct: 515  -----TSWTTVATRDGGEHPADLHVPAP--VVALANGFLGAPRHLGIHSGGMVLTERPIG 567

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599
            ++VP+ R       V Q++    E  GL+KFD LGL  L+ L   +  + +  G + +LS
Sbjct: 568  EVVPIERARMDKRTVLQWDKDGCEYMGLVKFDLLGLGMLSALDHMMRIVEEHLGERWELS 627

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP ++   Y LL    ++G+FQ+ES      L  ++P    D+   ++L RPGPI    
Sbjct: 628  TIPKEEPAVYDLLCRADSVGVFQVESRAQIGTLPRLRPREFYDLAIEIALIRPGPIQGGA 687

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            V  Y  R  G+E++   HP + P+L+ T+GV ++QEQ+M +A++L   +  EAD+LRRAM
Sbjct: 688  VHPYIRRATGREEVEYAHPSLVPVLERTKGVPLFQEQLMDMARVLGDCTRDEADLLRRAM 747

Query: 718  G-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            G K+  E ++  K++   G ++ G+    A  I+  +  FA++GF +SHA ++A + Y +
Sbjct: 748  GSKRGIERIESIKDKLYEGMARKGLVGEEADAIYLKILSFANFGFAESHALSFAKLVYAS 807

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV----------NTPCV 826
            +W K HYP  FLAA +  +       +    DAR+  ++++ P +               
Sbjct: 808  SWCKLHYPGAFLAALLRAQPMGFYSPQSLVHDARRHGVEVLRPDLVRSAASADLEPLAVA 867

Query: 827  DFKVGDNR-----------------------------IYYSLAAIKGVGTTTARHIMEAS 857
            D  VG  R                             +   L A++G+    A  I+ A 
Sbjct: 868  DGPVGLPRCLVDHPERTDWVPGTPDPTPAHRRDAAYAVRLGLDAVRGISAVVAERIVAAR 927

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CFGYSRMQLLQSLDNIQKYAQWVE 916
            A++PF    D   R     L+ R LE+L  AGA D  F    +   Q+L N    A W E
Sbjct: 928  AERPFADQADLSRRA---GLDARQLEALATAGAFDEAFPGGGLSRRQALWN----AGWTE 980

Query: 917  KNRTNKH-ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
               + +H E I A   G       +++  V  + +         G   + HP    +  L
Sbjct: 981  ---SEEHLEGIRA--AGPAPMLPEMDEVEVTMADL------WATGITPAQHPFGHLRERL 1029

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            R  GIK   ++ +   G  + +A +V  +Q+  T  G     VTF
Sbjct: 1030 RAAGIKSVADTASAEPGRRVHVAGLVTHRQRPGTAGG-----VTF 1069


>gi|218893372|ref|YP_002442241.1| error-prone DNA polymerase [Pseudomonas aeruginosa LESB58]
 gi|218773600|emb|CAW29414.1| probable DNA polymerase alpha chain [Pseudomonas aeruginosa LESB58]
          Length = 1031

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 301/1028 (29%), Positives = 485/1028 (47%), Gaps = 86/1028 (8%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +  +L +  ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q
Sbjct: 1    MAAWLVRMSAYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQ 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A    +Q IIG ++ ++         QG       P +VLL    EGYQ L  L++R  
Sbjct: 61   AAREHQVQLIIGSEIRLE---------QG-------PKLVLLAEDLEGYQNLCRLITRGR 104

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 K   R+    LQ+    GL+ +             +  +   +++    ++ F  
Sbjct: 105  R-QADKGHYRLLREDLQQ-PLAGLLAI-------------WLPNDHGDEQAAWLRERFPQ 149

Query: 181  RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            RL++ ++ HRG D   R  +++ LA    LP VA  +    +       D + A+ +   
Sbjct: 150  RLWLGVELHRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLP 209

Query: 240  VSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFI 296
            VS+     + P  + +L+    +  I+   P+AL   T++IA RC F L+      PR +
Sbjct: 210  VSEAG-AYLFPNGERHLRTLEALQGIY---PQALLAETLKIAERCRFDLEQLKYQYPREL 265

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                 D      + LR+    G+  R   GA AK       R++++ EL +IA + +  Y
Sbjct: 266  VPAGHD----PASWLRHLTEQGIARRWPNGASAK------VRKQIERELELIAELGYESY 315

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D + +A+   I +  GRGS A S   +AL IT++DP R +LLFERFL+ +R   P
Sbjct: 316  FLTVQDIVAFARGREI-LCQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPP 374

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  +RR+EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L 
Sbjct: 375  DIDVDFEHERREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLA 434

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
                       S QA + + R  EA      P + R+L ++ +L G  RH S H  G VI
Sbjct: 435  NCCGR-----WSDQAPSAE-RLEEAGFDPQSPILRRVLALTDELIGFPRHLSQHPGGFVI 488

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRG 593
             ++PL  LVP+     ++  V Q++   ++  GL+K D L L  L+ L++S D + A RG
Sbjct: 489  SEQPLDTLVPVENASMAERTVIQWDKDDLDAVGLLKVDILALGMLSALRRSFDLIHALRG 548

Query: 594  VK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             K + ++ IP +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 549  GKRLSIASIPSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRP 608

Query: 653  GPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GPI  D +  Y  R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EA
Sbjct: 609  GPIQGDMVHPYLRRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEA 668

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            D LRR+M   K    ++  +ER   G    G     A  IFE +  F  YGF +SHAA++
Sbjct: 669  DELRRSMAAWKRHGGLEHHRERLTRGMLAKGYEADFAARIFEQIKGFGSYGFPESHAASF 728

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-- 827
            A+++Y ++W+K H P  F  A +           +  QDAR+  +Q  P  V     D  
Sbjct: 729  ALLTYASSWLKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCS 788

Query: 828  ---FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
               F      I   L  I+G     AR I +    +PF  + D   R    +L+ R LE 
Sbjct: 789  LESFGQAQPAIRLGLRMIRGFREEDARRIEQVREAEPFLDVHDLGRRA---RLDARALEL 845

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  AGA           L+ L   +  A+W   +       +FA  +GT  ++ T+    
Sbjct: 846  LADAGA-----------LRGLAGHRHKARWAVAS-VEPQLPLFA--EGTAIEESTV-SLP 890

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
            + +      ++  +LG     HPL + +  L+    +   E      G  IR+A +VV +
Sbjct: 891  LPSRGEELLSDYALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVVGR 950

Query: 1005 QQKKTRKG 1012
            Q+ +T  G
Sbjct: 951  QRPQTASG 958


>gi|308154503|ref|NP_249360.3| DNA polymerase alpha chain [Pseudomonas aeruginosa PAO1]
 gi|71151832|sp|Q9I5Q2|DNAE2_PSEAE RecName: Full=Error-prone DNA polymerase
 gi|9946548|gb|AAG04058.1|AE004502_1 probable DNA polymerase alpha chain [Pseudomonas aeruginosa PAO1]
          Length = 1031

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 300/1028 (29%), Positives = 485/1028 (47%), Gaps = 86/1028 (8%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +  +L +  ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q
Sbjct: 1    MAAWLVRMSAYAELHCLSNFSFQRGASSATELFARAARLGYRALAITDECSLAGIVRAWQ 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A    +Q I+G ++ ++         QG       P +VLL    EGYQ L  L++R  
Sbjct: 61   AAREHQVQLIVGSEIRLE---------QG-------PKLVLLAEDLEGYQNLCRLITRGR 104

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 K   R+    LQ+    GL+ +             +  +   +++    ++ F  
Sbjct: 105  R-QADKGHYRLLREDLQQ-PLAGLLAI-------------WLPNDHGDEQAAWLRERFPQ 149

Query: 181  RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            RL++ ++ HRG D   R  +++ LA    LP VA  +    +       D + A+ +   
Sbjct: 150  RLWLGVELHRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLP 209

Query: 240  VSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFI 296
            VS+     + P  + +L+    +  I+   P+AL   T++IA RC F L+      PR +
Sbjct: 210  VSEAG-AYLFPNGERHLRTLEALQGIY---PQALLAETLKIAERCRFDLEQLKYQYPREL 265

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                 D      + LR+    G+  R   GA AK       R++++ EL +IA + +  Y
Sbjct: 266  VPAGHD----PASWLRHLTEQGIARRWPNGASAK------VRKQIERELELIAELGYESY 315

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D + +A+   I +  GRGS A S   +AL IT++DP R +LLFERFL+ +R   P
Sbjct: 316  FLTVQDIVAFARGRKI-LCQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPP 374

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  +RR+EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L 
Sbjct: 375  DIDVDFEHERREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLA 434

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
                       S QA + + R  EA      P + R+L ++ +L G  RH S H  G VI
Sbjct: 435  NCCGR-----WSDQAPSAE-RLEEAGFDPQSPILRRVLALTDELIGFPRHLSQHPGGFVI 488

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRG 593
             ++PL  LVP+     ++  V Q++   ++  GL+K D L L  L+ L++S D + A RG
Sbjct: 489  SEQPLDTLVPVENASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRG 548

Query: 594  VK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             K + ++ IP +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 549  GKRLSIASIPSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRP 608

Query: 653  GPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GPI  D +  Y  R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EA
Sbjct: 609  GPIQGDMVHPYLRRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEA 668

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            D LRR+M   K    ++  +ER   G    G     A  IFE +  F  YGF +SHAA++
Sbjct: 669  DELRRSMAAWKRHGGLEHHRERLTRGMLAKGYEADFAARIFEQIKGFGSYGFPESHAASF 728

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-- 827
            A+++Y ++W+K H P  F  A +           +  QDAR+  +Q  P  V     D  
Sbjct: 729  ALLTYASSWLKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCS 788

Query: 828  ---FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
               F      I   L  I+G     AR I +    +PF  + D   R    +L+ R LE 
Sbjct: 789  LESFGQAQPAIRLGLRMIRGFREEDARRIEQVREAEPFLDVHDLGRRA---RLDARALEL 845

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  AGA           L+ L   +  A+W   +       +FA  +GT  ++ T+    
Sbjct: 846  LADAGA-----------LRGLAGHRHKARWAVAS-VEPQLPLFA--EGTAIEESTV-SLP 890

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
            + +      ++  +LG     HPL + +  L+    +   E      G  IR+A +VV +
Sbjct: 891  LPSRGEELLSDYALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVVGR 950

Query: 1005 QQKKTRKG 1012
            Q+ +T  G
Sbjct: 951  QRPQTASG 958


>gi|330990447|ref|ZP_08314406.1| Error-prone DNA polymerase 1 [Gluconacetobacter sp. SXCC-1]
 gi|329762484|gb|EGG78969.1| Error-prone DNA polymerase 1 [Gluconacetobacter sp. SXCC-1]
          Length = 1053

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 265/889 (29%), Positives = 427/889 (48%), Gaps = 77/889 (8%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           ++  LQV + +S L GA S   + ++  A    A+ I D N+L   ++    A   GI+ 
Sbjct: 2   AYAELQVTTYFSFLRGASSPIELFEQAKALGIEALGICDRNSLAGMVQAHVAAKETGIRL 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           ++GC+LD+                     +++  +    Y RL  L+S    L + +   
Sbjct: 62  VVGCRLDL----------------ADFAPVLVYPTDRAAYARLCRLLS----LGKARAGK 101

Query: 130 RIC-LSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             C L W   +   EGL+++    +          +       L   ++ F DR  + L 
Sbjct: 102 GKCHLLWEDLVAWGEGLLVILLPDT----------ADDACALHLRKLQEAFADRASMALT 151

Query: 188 -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R R  D+ R  ++  LA+   +P++ TN+ LF + +     DV+  + + T + +    
Sbjct: 152 LRRRPNDQMRLYELANLAHQARVPMIVTNDVLFHTHDRRILQDVVTCIRNHTTIDEAGFA 211

Query: 247 RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           R    D YLK  +EM  +FS  PEA++ T EI  RC F L               DD+  
Sbjct: 212 RERHADRYLKPPAEMARLFSRYPEAIDRTREIVARCRFSL---------------DDLAY 256

Query: 306 EEENELR------NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
           +  +E+        +A+  L    A  A  +G    + R+ L  EL +I RM ++ YFL 
Sbjct: 257 QYPDEVSVPGQSPQQALEALTWEGAAAAYPEGI-PPEVRKTLTHELALIGRMDYAPYFLT 315

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V   +++A+   I +  GRGS A S   Y L IT IDP R SLLFERF++ +R   PD D
Sbjct: 316 VHSIVRYARSQGI-LCQGRGSAANSAVCYVLGITAIDPARTSLLFERFVSEERREPPDID 374

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           +DF   RR++VI+++   YG    A        +AK ALRDVG+ + +P   +  L   I
Sbjct: 375 VDFEHARREQVIQWIYGHYGRNHAALTAVVTRYRAKGALRDVGKVMGLPEDLIRTLSSQI 434

Query: 480 PNDPAHPVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                         D+    E    L+D  +   L++++ L G+ RH S H  G V+   
Sbjct: 435 -------WGWGRKLDEDALDETGIDLSDRRIRLTLDLARCLIGMPRHLSQHPGGFVLTHD 487

Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596
            L +LVP+         + +++   I+    +K D L L  LT ++K LD LA+ +G   
Sbjct: 488 RLDELVPIEPAAMDARQIIEWDKDDIDVLKFMKVDVLALGMLTCMKKGLDLLAEHKGQHY 547

Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI- 655
            L  IP +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI 
Sbjct: 548 TLQTIPAEDPRTYAMIRKADTIGVFQIESRAQMSMLPRLRPRVFYDLVIEVAIVRPGPIQ 607

Query: 656 -DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            D +  Y  R+ G+EK +   P ++ +L++T G+ ++QEQVMQ+A + +G+S SEAD LR
Sbjct: 608 GDMVHPYLRRRAGQEKEIYPTPELEKVLRKTLGIPLFQEQVMQVAMVCAGFSASEADQLR 667

Query: 715 RAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
           RAM   K    + + + R I G +  G   T A  IF+ L  F  YGF +SHAA++A+++
Sbjct: 668 RAMATFKNTGTVSRFRTRLIEGMTARGYPATFAERIFQQLEGFGSYGFPESHAASFAILA 727

Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GD 832
           Y ++WMK  +P  FLAA +  +        +  +DAR+  ++I P  +N    D  + G 
Sbjct: 728 YSSSWMKCTHPDVFLAALLNSQPMGFYAPAQLVRDAREHGVEIRPICINASRWDSTLEGP 787

Query: 833 NR------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            R      +   +  +KG+    A  I+ A  D+PF S++D   R   K
Sbjct: 788 ERNDGLFAVRLGMNLVKGLANEDAARIVAARGDRPFTSVDDLWRRAGVK 836


>gi|158520254|ref|YP_001528124.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3]
 gi|158509080|gb|ABW66047.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3]
          Length = 1003

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 290/1033 (28%), Positives = 481/1033 (46%), Gaps = 86/1033 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
             + L V S YSL+ G   +  +           +A+TDT+NL+    F        I P+
Sbjct: 1    MIPLTVRSGYSLMWGTAPIKEVCRVARQQGYDRLALTDTDNLYGLWHFLDACRRNDITPV 60

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L               T   T    VLLV   EGY+ L  L++  +L    K    
Sbjct: 61   VGAEL---------------TDPATTDRAVLLVKNPEGYKNLCRLITARHLEPDFKLETA 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I          +GL +LT             +  Q  E  +  +  +   R  ++L    
Sbjct: 106  IARH------ADGLAVLTRNPC---------HLKQWHESGVAVYGAM--PRRPMSLS--- 145

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                   S + Q A    +PLVAT  S FLS +D +AH +L A+  +T V +       P
Sbjct: 146  -------SPLCQTARYLNVPLVATPGSFFLSPQDMDAHRMLRAIDLNTTVDRLGPLEAAP 198

Query: 251  -DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + +L +  E    F   PEAL NT  ++   +F       ++P +  K   D      +
Sbjct: 199  GEAWLASPREYEKRFEACPEALANTRRLSETLTFTGPEFGLVMPPWESKTGTD----PGS 254

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR  A  G + R  +         +   +RL+ EL++I +M+F+ YFL+V D ++ +  
Sbjct: 255  ALRQAAYRGAQARYGRDL------PEPVARRLEHELSIIIQMRFAAYFLVVQDIVRLS-- 306

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
               P   GRGSGA S+ AY L IT++ P++ +L FERFLNP R   PD D+DF  D RD 
Sbjct: 307  ---PRICGRGSGAASLVAYCLRITNVCPIKHNLYFERFLNPGRKDAPDIDVDFAWDERDT 363

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP----NDPAH 485
            V+  V  ++G +  A +     +Q + A+R+V R   +  +++ R+ K +P     D A 
Sbjct: 364  VLAAVFERFG-DHCAMVCNHVRMQPRMAVREVARVYGLTEAEISRVTKKMPWFWRQDTAG 422

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L+ +++    R+  L  P    ++ +++K+ G  R+ S H  G++I  RP+ + VP+
Sbjct: 423  LDILRELSERPESRDLDLPAPWPG-IMAVARKICGAPRYLSVHPGGVIITPRPVCEYVPV 481

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS-LIPFD 604
             R  +  + + Q+     E AGL+K D LG ++L +++ ++  L      +D S   P D
Sbjct: 482  ERAAKG-VRIIQWEKDQAEDAGLVKIDLLGNRSLAVIRDAIYNLRSNNHLLDESTWAPED 540

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  T   ++   T+G F +ES   R   +  +    E ++   S+ RP   D I  Y  R
Sbjct: 541  DFATQEAVSQGKTMGCFYIESPATRLLQKKSRVGDFEHLVIHSSIIRPAANDYIQEYLRR 600

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             +G      IHPL+  +L ET G+++YQE V + A  ++G+S ++AD LR+ M KK K+ 
Sbjct: 601  LHGA-SWDPIHPLLADVLDETFGIMVYQEDVSRAAVSVAGFSHADADGLRKVMSKKDKDH 659

Query: 725  -MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +     RF  GA+KNG++      I+ ++  F+ Y F K H+A+YA +S+Q AW+KTHY
Sbjct: 660  VLADFYRRFADGAAKNGVTPEKIREIWRMMMSFSGYSFCKPHSASYARVSFQAAWLKTHY 719

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P  F+AA ++           +  +AR+  I I+ P VN   + ++   N I   L+A+ 
Sbjct: 720  PAAFMAAVIS-NQGGFYSTFAYVSEARRSGITILAPDVNASDIRWQGNGNTIRVGLSAVG 778

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD--CFGYSRMQL 901
             +   T    +       F  LED+  RV   + +    ++L+ +GA D  C G SR  +
Sbjct: 779  HLSLKTMEKTLAHRKAARFTGLEDYMDRV---RPDEPEAQALIQSGAFDALCPGRSRSMI 835

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
                    ++A W + NR     +    +  T    +       E+   R+  E  VLGF
Sbjct: 836  R------WQWACW-KNNRPPASSSPLLFD--TAPGPVVPPPQITEDPLERYRQEFSVLGF 886

Query: 962  YFSGHPLDVYKPILR-KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                HP+ +YK  L  +  IK   + +    G  + +A  +++ +  +T+ G  + ++TF
Sbjct: 887  LCDTHPMTLYKTELEGRQTIKA--KHLGRYAGKRVCVAGWLITGKVVRTKNGDPMEFLTF 944

Query: 1021 SEPAKEYEANFFP 1033
             +    +EA FFP
Sbjct: 945  EDETDIFEATFFP 957


>gi|254244906|ref|ZP_04938228.1| hypothetical protein PA2G_05781 [Pseudomonas aeruginosa 2192]
 gi|126198284|gb|EAZ62347.1| hypothetical protein PA2G_05781 [Pseudomonas aeruginosa 2192]
          Length = 1031

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 301/1028 (29%), Positives = 485/1028 (47%), Gaps = 86/1028 (8%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +  +L +  ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q
Sbjct: 1    MAAWLVRMSAYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQ 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A    +Q IIG ++ ++         QG       P +VLL    EGYQ L  L++R  
Sbjct: 61   AAREHQVQLIIGSEIRLE---------QG-------PKLVLLAEDLEGYQNLCRLITRGR 104

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 K   R+    LQ+    GL+ +             +  +   +++    ++ F  
Sbjct: 105  R-QADKGHYRLLREDLQQ-PLAGLLAI-------------WLPNDHGDEQAAWLRERFPQ 149

Query: 181  RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            RL++ ++ HRG D   R  +++ LA    LP VA  +    +       D + A+ +   
Sbjct: 150  RLWLGVELHRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLP 209

Query: 240  VSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFI 296
            VS+     + P  + +L+    +  I+   P+AL   T++IA RC F L+      PR +
Sbjct: 210  VSEAG-AYLFPNGERHLRTLEALQGIY---PQALLAETLKIAERCRFDLEQLKYQYPREL 265

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                 D      + LR+    G+  R   GA AK       R++++ EL +IA + +  Y
Sbjct: 266  VPAGHD----PASWLRHLTEQGIARRWPNGASAK------VRKQIERELELIAELGYESY 315

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D + +A+   I +  GRGS A S   +AL IT++DP R +LLFERFL+ +R   P
Sbjct: 316  FLTVQDIVAFARGRKI-LCQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPP 374

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  +RR+EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L 
Sbjct: 375  DIDVDFEHERREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLA 434

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
                       S QA + + R  EA      P + R+L ++ +L G  RH S H  G VI
Sbjct: 435  NCCGR-----WSDQAPSAE-RLEEAGFDPQSPILRRVLALTDELIGFPRHLSQHPGGFVI 488

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRG 593
             ++PL  LVP+     ++  V Q++   ++  GL+K D L L  L+ L++S D + A RG
Sbjct: 489  SEQPLDTLVPVENASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRG 548

Query: 594  VK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             K + ++ IP +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 549  GKRLSIASIPSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRP 608

Query: 653  GPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GPI  D +  Y  R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EA
Sbjct: 609  GPIQGDMVHPYLRRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEA 668

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            D LRR+M   K    ++  +ER   G    G     A  IFE +  F  YGF +SHAA++
Sbjct: 669  DELRRSMAAWKRHGGLEHHRERLTRGMLAKGYEADFAARIFEQIKGFGSYGFPESHAASF 728

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-- 827
            A+++Y ++W+K H P  F  A +           +  QDAR+  +Q  P  V     D  
Sbjct: 729  ALLTYASSWLKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCS 788

Query: 828  ---FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
               F      I   L  I+G     AR I +    +PF  + D   R    +L+ R LE 
Sbjct: 789  LESFGQAQPAIRLGLRMIRGFREEDARRIEQVREAEPFLDVHDLGRRA---RLDARALEL 845

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  AGA           L+ L   +  A+W   +       +FA  +GT  ++ T+    
Sbjct: 846  LADAGA-----------LRGLAGHRHKARWAVAS-VEPQLPLFA--EGTAIEESTV-SLP 890

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
            + +      ++  +LG     HPL + +  L+    +   E      G  IR+A +VV +
Sbjct: 891  LPSRGEELLSDYALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVVGR 950

Query: 1005 QQKKTRKG 1012
            Q+ +T  G
Sbjct: 951  QRPQTASG 958


>gi|317133724|ref|YP_004089635.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7]
 gi|315450186|gb|ADU23749.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7]
          Length = 1347

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 274/879 (31%), Positives = 437/879 (49%), Gaps = 103/879 (11%)

Query: 167  AEKRLLTFKKLFG-DRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEED 224
            A K  L + +LFG +  ++ LQ H   D +Y   ++  +A    +P V  N++ +  + D
Sbjct: 306  ARKEALYYSELFGKNNFFIELQFHGFEDEQYVFPRLCNIAKGLNIPCVPANDAHYTYKTD 365

Query: 225  YEAHDVLMAVAHSTVVSQKDRPR----VTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
             +  ++L+A +   ++   D       +  D  L      +    D+ +A EN   IA  
Sbjct: 366  AKRREMLVADSFKKIIETLDERSCQLFIKSDEELTEALTQILTKKDVEQAFENLRLIADN 425

Query: 281  CSFIL--QVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG-YHAQ 335
            C+ +L  + H P+  LP   E E D       + +R   + G+E R   G  + G    Q
Sbjct: 426  CNVVLPKEHHYPVYHLP---EGETD------SSYIRKLVLEGVEKRYPGGKASDGTVWDQ 476

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK--NNIP------VGPGRGSGAGSVTA 387
            ++  R++ EL +I +M ++ Y L+V D++ + +K   N P      +GPGRGS  GS+  
Sbjct: 477  EHINRMESELEIIGKMGYNHYHLVVQDYLNFGRKLGFNCPEGVGYTIGPGRGSAVGSLVC 536

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            Y L ITD+DPL+++L FER+LNP+R+SMPD D DF    R++ I Y++ KYG E V  + 
Sbjct: 537  YLLGITDLDPLKYNLFFERYLNPERVSMPDIDADFANFVREDCIDYMREKYGVEGVCGVT 596

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDR---LCKLIPNDPAHPVSLQAIADDSR-----FR 499
            T G+L  KAA+   GR     +  V R   + KL+P    H   L  +AD S+     F 
Sbjct: 597  TKGTLGIKAAILLAGRVNPKTHDDVQRVRAISKLVPKGAKHFTDLIDVADKSKGDIKSFM 656

Query: 500  EARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
             ++ +  S++R ++E +  +EGL  +   HAA ++I D           +V   + +   
Sbjct: 657  LSKYSAGSIERQIIEDASSVEGLTVNYGRHAAAVIISDTG---------NVSDQVALMST 707

Query: 559  NMKWI---------EKAGLIKFDFLGLKTLTLLQKSLDFL---AQRGVKVDLSLIPFDDH 606
               W           + GL+K DFLGL  L ++  +L  +    +R + ++   + F+D 
Sbjct: 708  GGAWAVQCTKEEAEAEVGLLKMDFLGLINLDIITATLRKIYRNTRRKINMNTD-VHFEDE 766

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYN 662
                + +T  T  +FQ  S GM+Q L+  +P   EDII LV+ YRPGP+    D I V +
Sbjct: 767  VFEGIFSTGNTDAVFQFSSDGMKQMLKEFRPSSFEDIILLVAAYRPGPMQYLSDIIAVKH 826

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK     I    P + P+L  T G  +YQEQV +I + L+GYSL +AD++RRAM KK  
Sbjct: 827  GRKPESYAI----PELKPILNGTYGKTVYQEQVQEIFKKLAGYSLGQADLVRRAMSKKKL 882

Query: 723  EE--------MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +E        +    ER I G   NGI++  A  +F+ +  FA Y FNKSHAAAYA ++Y
Sbjct: 883  KELAKEKESFLHGDPERGIKGCIANGINEADANILFDEMMDFASYAFNKSHAAAYAYVAY 942

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTAW+K HYP E++AA M  E    +K+  +  ++R   + +  P +N   V F    + 
Sbjct: 943  QTAWLKYHYPTEYMAAVM--EHSKYDKLPMYIYNSRDMGLTVKIPDINKSDVGFIAEKDS 1000

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I +  + +KGVG      I+E      F SL++F SR +   L+   L++LVF GA DCF
Sbjct: 1001 IIFGFSGMKGVGDVDIEKIIEERKKGEFKSLKNFISRTN---LSIDTLKNLVFGGAFDCF 1057

Query: 895  GYSRMQLLQSLDNIQKYAQWVE---------------------KNRTNKHENIFAHEKGT 933
            G +R  +   +++++     +E                     K +  + E      K  
Sbjct: 1058 GQTRKSMFSYVESLKDIKSEIESIQSKIDVLTEKMNEDASEKDKKKLRELEKNCDEYKTK 1117

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
            + D I  + +  E+   R   E+ +LG + S HP++ YK
Sbjct: 1118 YQDLICEQGY--EDKIGRLTAERNILGTFISDHPINSYK 1154


>gi|229820774|ref|YP_002882300.1| DNA polymerase III, alpha subunit [Beutenbergia cavernae DSM 12333]
 gi|229566687|gb|ACQ80538.1| DNA polymerase III, alpha subunit [Beutenbergia cavernae DSM 12333]
          Length = 1194

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 316/1148 (27%), Positives = 498/1148 (43%), Gaps = 167/1148 (14%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++S L+GA     ++ + A  +  A+AITD + L+  + F++ A A G++ +
Sbjct: 9    YAELHAHSAFSFLDGASQPEALVAEAARLELDAVAITDHDGLYGVVRFAEAARALGMRSV 68

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-------D 123
             G +L +D +     T     P P    +V+L     GY RL   ++  +L        D
Sbjct: 69   FGAELSLDQR-----TPATGVPDPDATHLVVLARGPAGYHRLSRAIATAHLATGKKGERD 123

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF---------------------N 162
             G       L  L E      ++LTG   G + RA                        +
Sbjct: 124  YGHAVGLDPLEVLAEQAAGDWLVLTGCRKGAVRRALDGGADGADGAGGAGGAGSIAGAEH 183

Query: 163  SSQVAEKRLLTFKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFL 220
              + A + L     LFG D + V L       D  R   +  LA    LP+VAT      
Sbjct: 184  GERAAARELDRLVALFGRDNVAVELTDLGAPADSARCDTLADLAARAGLPVVATGGVHCA 243

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
               +    DVL AV     + + D        +L++  EM++  +  P+A+    E+   
Sbjct: 244  HPREGRLVDVLAAVRARRSLEEIDGWLPPAPAHLRSADEMLARHARHPQAVRTAAELGLE 303

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            C+F L + AP LP        D    E + LR      L +R A+          D    
Sbjct: 304  CAFDLTLVAPRLPPHPVPPGYD----EASWLRE-----LTMRCARTRYGTRDERPDAYAI 354

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            +D EL++I R+ F GYFLIV + + +  +  I +  GRGS A S   YAL IT +D ++ 
Sbjct: 355  IDRELDIIVRLGFPGYFLIVHEIVDFCVQQGI-LCQGRGSAANSAVCYALGITAVDAVQH 413

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFL+  R   PD D+D    RR+EVI++V  +YG E  AQ+    S + ++A+RD
Sbjct: 414  KLLFERFLSDGRSGPPDIDVDIESGRREEVIQFVYTRYGREHAAQVANVISYRPRSAVRD 473

Query: 461  VGRALQMPYSQVDRLCKLI----------PNDPAHPVSLQA---------------IADD 495
              RA      Q D   K I          P +P   V   A                A  
Sbjct: 474  AARAFGYDVGQQDAWSKGIERWGTLRGPDPGNPDPAVKANATSTSSTSSSPSRATGTAAG 533

Query: 496  SRFREARL--ADPSVDR---------------LLEISQKLEGLYRHASTHAAGIVIGDRP 538
             + RE  +   DP+  R               +L++++++  L RH   H+ G+V+  RP
Sbjct: 534  PKIREKGVDTHDPAPPRHAPASAREMGEIPNHVLDVAEQMLRLPRHLGIHSGGMVLCHRP 593

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD 597
            + ++ P+         V Q++      AGL+KFD LGL  LT L+ + + + A  G ++ 
Sbjct: 594  VIEVCPVEWATMPGRTVLQWDKDDCADAGLVKFDLLGLGMLTALRLAFEQVEATSGERLA 653

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            L  +P +D + Y LL    T+G+FQ+ES      L  ++P    DI+  V+L RPGPI  
Sbjct: 654  LHSLPQEDPKVYELLCAADTVGVFQVESRAQISTLPRLKPRNFYDIVVEVALIRPGPIQG 713

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            +++  +  R+NGKEK+  +HPL++  L +T G+ ++QEQ+MQIA  ++G+S SEAD LRR
Sbjct: 714  NSVHPFIRRRNGKEKVTYLHPLLEGALSKTLGIPLFQEQLMQIAIDVAGFSGSEADQLRR 773

Query: 716  AMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AMG K+  E+M+   ER ++G +  G+ + +   I++ L  F+D+GF +SHA ++A + Y
Sbjct: 774  AMGSKRSLEKMEALHERLLAGMADRGVPRDVGEQIYDKLKAFSDFGFPESHAFSFAYLVY 833

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN--------------------- 813
             +AW+K H+P  F A  +  +            DAR+                       
Sbjct: 834  ASAWLKIHHPEAFFAGLLGAQPMGFYSPASLVADARRHGVVVRRASIADSAVHALVEHGA 893

Query: 814  -----IQIMP---PSVNTPCVDFKVGDNR------------------------------I 835
                 + ++P    S  T  VD    D R                              +
Sbjct: 894  ADHGAVGLVPRATQSSETWLVDAGKADARGAAAVDPALPLDPAADAEDADGGPSGRRFAV 953

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               LA I+G+G  TA  I+      PF   +D   RV   +L    LE+L  AGAL CFG
Sbjct: 954  RLGLAPIRGIGEKTAERIVTERDRAPFADAQDLARRV---RLTAAQLEALATAGALRCFG 1010

Query: 896  YSRMQLLQSLDNIQKYAQWVE--KNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSSVRF 952
             SR + L S   +   +  V      T   + +     G  +  +  ++ F V ++ V  
Sbjct: 1011 TSRREALWSAGALAGESGRVHLTSQGTVVQDVLGGTASGVAAPALPGMDAFEVASADV-- 1068

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
                   G     +P +  +P L   G++          G  + +  +V  +Q+  T  G
Sbjct: 1069 ----WATGLSPDRYPTEFVRPGLDAAGVRPVATLGGIENGARVEVGGVVTHRQRPGTAGG 1124

Query: 1013 SRIGWVTF 1020
                 VTF
Sbjct: 1125 -----VTF 1127


>gi|108761967|ref|YP_632162.1| DNA polymerase III subunit alpha [Myxococcus xanthus DK 1622]
 gi|108465847|gb|ABF91032.1| DNA polymerase III, alpha subunit [Myxococcus xanthus DK 1622]
          Length = 1013

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 292/1019 (28%), Positives = 478/1019 (46%), Gaps = 92/1019 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S L GA     ++   A     A+A+TD + L+  ++    A   G++ I
Sbjct: 3    YAELVCRSNFSFLRGASHPEELVATAARLGLGALALTDADGLYGVVKAHLAAKEHGVRLI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L   ++D               P +V+  +   GY  L  LVS+  +     ++  
Sbjct: 63   LGAEL--TLEDG--------------PPVVVYAADGTGYSNLCALVSQSRMTHPKGEA-- 104

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
              L W        +   + G    +     F       +++++  + F +R +V + R  
Sbjct: 105  -GLPW------RAVADRSAGLLALLPAPAPF-------EQVVSLAEAFPERFHVGICRTL 150

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               D  RE++  +LA    +PLVA N+            DVL+++ H T V +    R+ 
Sbjct: 151  SAGDAEREARAERLALELGVPLVAHNDVHTHHRRRQALQDVLVSIRHGTSVDRAG-TRLL 209

Query: 250  P--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-QVHAPILPRFIEKECDDIQKE 306
            P  +  LK+  +M  +F+D PEAL    E+A RC   L  +H     RF E+   +  + 
Sbjct: 210  PNAERTLKSPRDMARLFADRPEALARAAELASRCHASLDDLHY----RFPEEGLPE-GRT 264

Query: 307  EENELRNKAVAGLEVRLAQG---AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +  LR     GL  R  +G   A+ K         +++ EL +IA + F+GYFL + D 
Sbjct: 265  ADAHLRVLTYEGLRFRYPEGVPPAVVK---------QIEHELKLIAALDFAGYFLALWDI 315

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+   I +  GRGS A S   YAL IT IDP+R  LLFERFL+ +R   PD D+DF 
Sbjct: 316  VRFARARGI-LCQGRGSAANSAVCYALQITAIDPVRMGLLFERFLSMERKEPPDIDVDFE 374

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV++YV  K+G      +      + + ALR+ G+AL +   QVDRL K+  ++ 
Sbjct: 375  HERREEVLQYVYEKHGRRHAGMVCEVICYRGRLALRETGKALGLSLDQVDRLSKVSASN- 433

Query: 484  AHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                      D    REA L+  D  V + L ++ +LEG  RH S H  G V+   PL++
Sbjct: 434  ----GFDVTPD--VLREAGLSAEDGRVQKTLALAMELEGFPRHLSIHVGGFVMTREPLTE 487

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            LVP+         V Q+    I   GL+K D L L  LT L K    + +  G ++ L+ 
Sbjct: 488  LVPVENAAMPGRTVIQWEKDDINAVGLLKVDLLALGMLTALSKCFALIREHHGRELSLAT 547

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P +D + Y +L    T+G+FQ+ES      L  ++P    D++  ++L RPGPI   +V
Sbjct: 548  VPAEDPKVYDMLCEADTVGVFQIESRAQMNMLPRLRPRTFYDLVVEIALIRPGPIVGNMV 607

Query: 661  YN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
            +    R+NG+E++      +  +L +T GV ++QEQ M++A + +G++  EAD LRR + 
Sbjct: 608  HPFLRRRNGQEQVEYPSEAVKEILGKTLGVPLFQEQAMKLAMVAAGFTAGEADGLRRVLS 667

Query: 719  KKIKEEMDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K  E M  Q + RF+ G    G ++  A   F+    FA YGF +SH+A++A+I+Y ++
Sbjct: 668  HKRAESMLLQYRGRFVEGCVSRGYTRKQAEEWFDNFRGFAHYGFPESHSASFALIAYASS 727

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRI 835
            W+K HYP  F AA +  +            DA++  + + P  V     D  +  G   +
Sbjct: 728  WLKCHYPAAFTAALLNSQPMGFYAPHTLVADAQRHGVVVRPVDVRHSSWDCTLEEGGAAL 787

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC--SRVDSKKLNRRVLESLVFAGALDC 893
               L  +KG+G +  R +  A  +  F  + D    SR    +L R     L  AGAL  
Sbjct: 788  RLGLRMVKGLGESAGRRVATAKREG-FRDVGDLARWSRAPRHELTR-----LALAGALSS 841

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               SR Q L  L  +               +++F    G   D   +E  S++    R  
Sbjct: 842  LCGSRRQALWELQALGPL----------DSDDLFF---GMAMDGTAVELPSMDVLE-RVC 887

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             +   +G     HPL++ +P+L++ G    E       G  + +  M++ +Q+  T KG
Sbjct: 888  ADYDTVGLSLEKHPLELLRPVLKQQGAVTAEGLKKVAHGRRVAVGGMLICRQRPPTAKG 946


>gi|116687247|ref|YP_840493.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
 gi|116652962|gb|ABK13600.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
          Length = 1049

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 300/1032 (29%), Positives = 488/1032 (47%), Gaps = 93/1032 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AA + 
Sbjct: 10   PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAANMP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG         + ++T    +P     +   L    +GY  L E +S +  +   K +
Sbjct: 70   LIIG--------SHFRLTAADGSP---ALAFTALAMNRDGYGNLCEFIS-LGRMRSKKGT 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L+   T    +        I    F  + Q  + ++  F ++FGDR +V L  
Sbjct: 118  YRLAPLDLEHPETPYTHLRNLPDCIAILSPDFPANEQRLDAQVEWFARVFGDRAWVALTL 177

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H R  D      + ++A  H +P+VAT+  L          DVL  +     V++     
Sbjct: 178  HARAMDDIHRGVIERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGRPVTECGY-E 236

Query: 248  VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            + P  + +L++R  + +++     ALE TV +ARRC+F L               DD++ 
Sbjct: 237  LAPNAERHLRSRLRLANLYP--AGALEETVRVARRCTFSL---------------DDLKY 279

Query: 306  EEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            E  +EL           R +   G   R   G         D + +++ EL +IA M + 
Sbjct: 280  EYPDELVPAGTDPATYLREQTYIGARRRFPAGIPV------DVQAQIEHELQLIADMHYE 333

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFL V D +Q+A++  I +  GRGS A S   Y L +T++DP R S+LFERF++ +R S
Sbjct: 334  AYFLTVYDIVQFAREQGI-LCQGRGSAANSAVCYCLGVTEVDPSRQSMLFERFISKERNS 392

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   +R+ V++Y+  KYG +R A      + + ++ALR+ G+AL +  + V+R
Sbjct: 393  PPDIDVDFEHQKREIVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDPAIVER 452

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSV---DRLLEISQKLEGLYRHASTHAAG 531
            + K      +    LQ      RF EA L DP      +    + +L G  RH S H+ G
Sbjct: 453  VAKQHHWFDSRADLLQ------RFAEAGL-DPGAPLNQQWAGFAAQLLGYPRHLSQHSGG 505

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             VI    L++LVP+      D  + Q++   IE  G++K D L L  L++++++LD +++
Sbjct: 506  FVISRGKLTRLVPVENAAMEDRSIIQWDKDDIEALGILKVDCLALGMLSMVRRALDMISE 565

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
             RG   +L  IP +D  TY +L    ++G+FQ+ES      L  ++P C  D++  V++ 
Sbjct: 566  KRGETFELQDIPAEDKATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIV 625

Query: 651  RPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+   +V+    R+ G E +      ++  L  T GV I+QEQVMQ+A L +G+S  
Sbjct: 626  RPGPVQGGMVHPFLRRRQGLEPVTFPSESMEKALARTLGVPIFQEQVMQVAMLAAGFSAG 685

Query: 709  EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EAD LRRAM   K K  ++   ER +SG  + G  +  A +IF  +  F +YGF +SHAA
Sbjct: 686  EADQLRRAMAAWKRKGGLEPYHERLVSGMLERGYDREFAESIFAQIKGFGEYGFPESHAA 745

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++A++ Y +AW++ H P  FLAA +  +        +  QDAR+  ++++P  VN    D
Sbjct: 746  SFALLVYSSAWLRRHEPAVFLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWD 805

Query: 828  FKV------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
              +         R+ +SL  ++G+    A  I  A A +PF  + D   R    +L+R  
Sbjct: 806  STIEGPTTSAPVRLGFSL--LRGMREDVAGRIELARAARPFVDVADLARRA---RLDRHD 860

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            L+ L  A AL           +SL    + A            ++    +GT  D   + 
Sbjct: 861  LQVLARANAL-----------RSLAGGNRRAALWLAAAAVPDRDLL---RGTERDD-AVP 905

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAM 1000
                 +       + R +GF    HPL + +  L    ++  E+ +AT+R G   R   +
Sbjct: 906  ALPQASEGHEIVTDYRAMGFTLGRHPLALLRDRLALDRLQSAEQ-LATLRSGQLARACGL 964

Query: 1001 VVSKQQKKTRKG 1012
            V  +Q+  T  G
Sbjct: 965  VTVRQRPGTANG 976


>gi|172064770|ref|YP_001812420.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MC40-6]
 gi|171998255|gb|ACB69171.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MC40-6]
          Length = 1049

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 276/910 (30%), Positives = 445/910 (48%), Gaps = 76/910 (8%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AA + 
Sbjct: 10  PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAANMP 69

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG    +   D            P + +   L    +GY  L E +S +  +   K +
Sbjct: 70  LIIGSHFRLTAADGA----------PAL-AFTALAMNRDGYGNLCEFIS-LGRMRGKKGT 117

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            R+    ++        + T      I    F  + Q  + ++  F ++FGDR +V L  
Sbjct: 118 YRLAPLDVEHPEAPFTHLRTLPDCIAILSPDFPANEQRLDAQVEWFARVFGDRAWVALTL 177

Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H R  D      V ++A  H +P+VAT+  L          DVL  +     V++     
Sbjct: 178 HARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGRPVTECGY-E 236

Query: 248 VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           + P  + +L++R  + +++     ALE TV +ARRC+F+L               DD++ 
Sbjct: 237 LAPNAERHLRSRLRLANLYP--AGALEETVRVARRCTFLL---------------DDLKY 279

Query: 306 EEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
           E  +EL           R +   G   R   G         D + +++ EL +IA +K+ 
Sbjct: 280 EYPDELVPAGTDATTYLREQTYIGARRRFPAGI------PIDVQAQIEHELQLIADLKYE 333

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFL V D +Q+A++  I +  GRGS A S   Y L +T++DP R S+LFERF++ +R  
Sbjct: 334 AYFLTVYDIVQFAREQGI-LCQGRGSAANSSVCYCLGVTEVDPSRQSMLFERFISKERNE 392

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            PD D+DF   RR+EV++Y+  KYG +R A      + + ++ALR+ G+AL +  + VDR
Sbjct: 393 PPDIDVDFEHQRREEVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDPAIVDR 452

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSV---DRLLEISQKLEGLYRHASTHAAG 531
           + K      +    LQ      RF EA L DP      +    + +L G  RH S H+ G
Sbjct: 453 VAKQHHWFDSRADLLQ------RFAEAGL-DPEAPLNQQWAGFAAQLLGYPRHLSQHSGG 505

Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            VI    L++LVP+      D  + Q++   IE  G++K D L L  L++++++LD +++
Sbjct: 506 FVISRGKLTRLVPVENAAMEDRSIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISE 565

Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            RG   +L  IP +D  TY +L    ++G+FQ+ES      L  ++P C  D++  V++ 
Sbjct: 566 KRGETFELQDIPAEDMATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIV 625

Query: 651 RPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
           RPGP+   +V+    R+ G E++      ++  L  T GV I+QEQVMQ+A L +G+S  
Sbjct: 626 RPGPVQGGMVHPFLRRRQGLERVTFPSEGMEKALARTLGVPIFQEQVMQVAMLAAGFSAG 685

Query: 709 EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
           EAD LRRAM   K K  ++   ER ++G  + G  +  A +IF  +  F +YGF +SHAA
Sbjct: 686 EADQLRRAMAAWKRKGGLEPYHERLVNGMLERGYDREFAESIFAQIKGFGEYGFPESHAA 745

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
           ++A++ Y +AW++ H P  FL A +  +        +  QDAR+  ++++P  VN    D
Sbjct: 746 SFALLVYSSAWLRRHEPAVFLTALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWD 805

Query: 828 FKV------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
             +         R+ +SL  ++G+    A  I  A A + F  + D   R    +L+R  
Sbjct: 806 SAIEGPTTEAPVRLGFSL--LRGMREDVAGRIELARAARSFVDVADLARRA---RLDRHD 860

Query: 882 LESLVFAGAL 891
           L+ L  A AL
Sbjct: 861 LQVLARANAL 870


>gi|194246498|ref|YP_002004137.1| DNA polymerase III, alpha subunit [Candidatus Phytoplasma mali]
 gi|193806855|emb|CAP18284.1| DNA polymerase III, alpha subunit [Candidatus Phytoplasma mali]
          Length = 920

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 270/933 (28%), Positives = 469/933 (50%), Gaps = 94/933 (10%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           +    S Y+LL+   SL +I+     +    ++++D  NL+  +EF +      I+P+IG
Sbjct: 4   YFYCQSYYNLLKSLNSLEDIVKTAIKNNYDFVSLSDDENLYGMIEFLELCYKYKIKPVIG 63

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            ++ +++    + +   K        I++      G   LI+L + +       ++  + 
Sbjct: 64  IKIKLNLNKKNEFSKNNKKI-----EILVYAKNDIGINNLIKLSNII-----KAENKEVY 113

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFN------------SSQVAEKRLLTFK-KLFG 179
           L  LQE+  EG+ ++       I   FFF             + ++ E  LL FK K+  
Sbjct: 114 LQDLQEL-QEGIFVIIS-----ILDKFFFEKVNNYFLSPTDANKEIIETILLNFKEKIKN 167

Query: 180 DRLYVNLQRHRGYDRYR----------------ESQVVQLAYTHELPLVATNNSLFLSEE 223
             + ++LQ +   D                   E  +   A   ++ ++ T+ + +L ++
Sbjct: 168 FYIGISLQANINVDMIEYGINDLSIISPDLEQIEDNITYFADKLKIKILPTHKTKYLEQK 227

Query: 224 DYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
           D   ++ L+ + ++   ++K+  ++      K   E +  +   P+ + N  E+  + ++
Sbjct: 228 DNIVYEQLIKL-NTDNKNEKNNQKLNFSFLTK--EEFILKYDKFPKLMLNLQELVSKINY 284

Query: 284 ILQV-----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
              +     H P + + +  +   I K++  E   K +   E ++            +Y 
Sbjct: 285 SNNIFDDKFHLPKINKDVLLDSSKILKKKTWENFKKKINTKENKIYS----------EYV 334

Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
           +RL  EL +I++MK+  YFLIVAD I +AKKNNI VGPGRGS  GS+  + L IT+IDPL
Sbjct: 335 KRLKHELKIISQMKYEDYFLIVADIISYAKKNNILVGPGRGSSVGSLVCFCLDITEIDPL 394

Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
           ++ L+FERFLNP R  MPD D+DF  ++R+ VI YV+NKY +  VA +ITF        +
Sbjct: 395 KYDLIFERFLNPQRTKMPDIDLDFPDNQRENVINYVKNKYKNNNVANLITFLHFPMNFLI 454

Query: 459 RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
             +   L   Y+  D L K I          +   D + ++        ++R+  I  K+
Sbjct: 455 DKIANNL-YGYTNTDNLKKKIS---------KKTLDKTDYK-----GKEIERIANIIIKI 499

Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMY--RDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
               R   TH +GI++    L + +P+    + +     TQF  K ++K GL K DFLG+
Sbjct: 500 P---RTTGTHISGIILSQENLLKTLPLQLNNNNKQTNYQTQFEDKNLQKIGLFKIDFLGI 556

Query: 577 KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
           K LTL+ K L    ++   +++  IP DD +TY+LL  + T+ IFQLES+  +  L+ +Q
Sbjct: 557 KALTLMNKIL----KKIKNLEIKNIPLDDIKTYNLLKEQKTISIFQLESTTAKNVLKKIQ 612

Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
           P    D+I ++   RPG I+ I  Y   KN   K V +HPLI  +LK T GVIIYQEQ+M
Sbjct: 613 PCKFSDLIDVLGFNRPGTINFINEYIRNKNTNIKKVFLHPLIHEILKPTHGVIIYQEQIM 672

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           QI    + Y+L EAD  R A+ KK +  +  +K  FI  + +NG S      I++ +  F
Sbjct: 673 QIIIKFANYNLIEADNFRNAISKKDQYFLINEKNTFIKKSMENGNSIEDTNKIYDHIYNF 732

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEF--LAASMTLEMDNVEKIKKFCQDARQFNI 814
           A+YGFNKSH+ AYA+I+Y+ +++KT+Y  EF  +  +   + ++ E    F ++ +   +
Sbjct: 733 ANYGFNKSHSVAYALITYRMSYLKTNYQKEFNLVLLNQFAKNNDWEATNNFIKEIKT-EM 791

Query: 815 QIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
           + + P++      + V  + ++   L +IKGV     +++++    K F++ E+F  R+ 
Sbjct: 792 KFIKPNIFNSSNQYNVLSEKKLIIPLISIKGVDNNFYQNLIKEKEQKKFENYENFKQRLK 851

Query: 874 ---SKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
              +   N  +L++L+F+GALD FG +R  L +
Sbjct: 852 ISLNLNKNENLLDNLIFSGALDIFGLNRRTLYE 884


>gi|229105233|ref|ZP_04235882.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-28]
 gi|228678159|gb|EEL32387.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-28]
          Length = 562

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 222/592 (37%), Positives = 349/592 (58%), Gaps = 39/592 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3   FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG    I        + + +  +P    +VLL     GYQ L+++ S   ++ + K+   
Sbjct: 63  IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             D    + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306
            D +YLK+  EM ++FS   EA+ NTV+IA RC   +  H   LP+F     E +DI   
Sbjct: 226 TDQYYLKSSDEMEALFSHTEEAIYNTVKIAERCKVEIPFHVNQLPKFPVPSNETNDIY-- 283

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               LR     GL  R        G   + + +RL+ ELNVI+ M FS YFLIV DF+++
Sbjct: 284 ----LRRVCEEGLHKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKY 332

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   R
Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           RDE+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     
Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450

Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
           ++L+   ++S+  RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +
Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKV 596
            ++  +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+  +RG K+
Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKRGKKL 561


>gi|226228139|ref|YP_002762245.1| error-prone DNA polymerase [Gemmatimonas aurantiaca T-27]
 gi|226091330|dbj|BAH39775.1| error-prone DNA polymerase [Gemmatimonas aurantiaca T-27]
          Length = 1113

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 290/1045 (27%), Positives = 475/1045 (45%), Gaps = 76/1045 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++SLL+GA     ++ + A+    A+A+TD + +   ++F   A    +  I
Sbjct: 29   YAELHCHSAFSLLDGASLPEQLVTRAASFGYQALALTDHDEMGGIVQFGVAARERQLNAI 88

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSV 129
            +G +L + M          +T       +VLL  T EGY+ +  LV+R  +  ++G+ SV
Sbjct: 89   LGVELTVRMPHLDGQRGDRRT------QLVLLAETREGYRNISTLVTRARMDSERGRPSV 142

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + +  L++    G+  LTGG  G + +         A +       +FG  L +    H
Sbjct: 143  PLAM--LRQHAA-GVTALTGGPRGWVPQLLAEGRQYEAFEAAQELHAIFGQHLAIECWDH 199

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247
            R   +R    Q++ LA    +P V TNN  +   +D   HD L A+ H  T+     R R
Sbjct: 200  RLPEERVLVEQLIPLAKWLGVPWVVTNNVYYAEPKDRAVHDALSALRHQRTLDEMGTRLR 259

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               +  LK+   +   +  L E +  T++IA+RC+F L    P +P F   +        
Sbjct: 260  PNAEWALKDPRLIYQRWRGLEEGVRATLDIAKRCAFRLAGLKPAMPPFPLPD----GFTA 315

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L    + G   R           +  +RQ++  EL  I R   + +FL V   ++ A
Sbjct: 316  DTYLEEIVLTGARERWGD------RFSDVHRQQIAHELAAIRRRDCATFFLTVWRIVRHA 369

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A S   Y L +T +DP+ F LLFERFL  D    PD DIDF    R
Sbjct: 370  RSEGI-LCQGRGSAASSAVCYCLGVTPVDPIYFGLLFERFLGDDATEEPDIDIDFAHRDR 428

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            + ++++V   +G E  A +    +   ++A RD  R L     Q D L        AH  
Sbjct: 429  ERILQHVYKHFGREHAAMVCEQITWGGRSAARDAARVLGFSPQQGDILADFSDRHGAHTT 488

Query: 488  S--LQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +   +      R   A   L DP V +L  +   L  L RH S H  G V+ D PL  LV
Sbjct: 489  ADLFETAEGQQRLTAAGFDLTDPRVQQLAPVMNGLHELPRHRSIHVGGFVLSDEPLGSLV 548

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+     +D  V Q+    +   G+ K D LGL  LT++Q  L +L   +   +D++   
Sbjct: 549  PIEPASMADRTVIQWEKDDLGPVGMYKIDLLGLGMLTVVQDCLRYLRHTKNTHIDMAHFN 608

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD + Y  +    T+G+FQ+ES      L  ++P C  D++  V+L RPGP+   +V  
Sbjct: 609  MDDKDVYDTMCRADTVGVFQIESRAQMSTLPRLKPRCFYDLVVEVALIRPGPLQGQMVHP 668

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-K 719
            Y  R+  +E +   HP + P+L+ T GV I+QEQ MQ+A  ++ ++ ++AD LR+ MG K
Sbjct: 669  YLRRRAKEEAVDYPHPDVKPILERTFGVPIFQEQAMQVAIKMADFTQAQADELRKTMGHK 728

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            + K  M K + +   G  K  I   +   I   +  FA +GF +SHAA++A+I Y TA++
Sbjct: 729  RSKVRMKKVERQLRDGMEKKKIDPKVIERICHQINGFAAFGFPESHAASFALIVYATAYL 788

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--FKVGDNR--- 834
            + HY  E+L A +  +           +DA++  +++ P  +     D   ++ D R   
Sbjct: 789  RYHYAPEYLCAILNAQPMGFYAPGTLIEDAKRHGVEVRPVDLMRSGWDHSLELPDGRTLM 848

Query: 835  -------------------------IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDF 868
                                     +   +  I+ +G + AR ++EA+ AD PF S+ED 
Sbjct: 849  PNDGTILWGPRHTIDATQTSAEHVAVRLGVRLIRNLG-SKARKVLEAALADGPFRSIEDA 907

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             SRV    L+ R   +L  AGALD      M   +  +  ++ A W     T +     A
Sbjct: 908  VSRV---TLDARGWRALAEAGALDS-----MFAHEPPERRRRVALWEVLALTKEPPLPLA 959

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
              +             VE ++  +    R+ G    GHP+   +P+L   G++  ++   
Sbjct: 960  PPRRAPPPTSLAACTPVELTAADY----RMTGVSLVGHPMKHARPVLEPNGVRTIQDIQQ 1015

Query: 989  TIR-GNNIRLAAMVVSKQQKKTRKG 1012
              + G  + +A +V+ +Q+  T KG
Sbjct: 1016 HGKDGETVAIAGVVICRQRPPTAKG 1040


>gi|296114706|ref|ZP_06833357.1| DNA polymerase III, alpha subunit [Gluconacetobacter hansenii ATCC
            23769]
 gi|295978740|gb|EFG85467.1| DNA polymerase III, alpha subunit [Gluconacetobacter hansenii ATCC
            23769]
          Length = 1057

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 292/1024 (28%), Positives = 472/1024 (46%), Gaps = 82/1024 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  LQ  + +S L GA S   +  +  A    A+ I D N+L   ++    A   G+
Sbjct: 5    APRYAELQGTTYFSFLRGASSPIELFAQAKALGVEALGICDRNSLAGMVQAHVAAKEVGL 64

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + ++GC+LD+               FP  P +V  +  A  Y RL  L++ +     GK 
Sbjct: 65   RLVVGCRLDL-------------ADFP--PVLVYPMDRA-AYGRLCRLLT-IGKARAGKG 107

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +    L   G   ++++   ++   D A   +        L   K  F DR ++ L 
Sbjct: 108  KCHLLWEDLVAWGEGQIVIMIPNTA---DDACGLH--------LRKLKDAFADRAFMALT 156

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
               R  D+ R  ++  LA+   +P V TN+ LF +       DV+  + H+T + +    
Sbjct: 157  LLRRPNDQMRLYELANLAHQARVPTVVTNDVLFHTHNRRILQDVVTCIRHNTTIDEAGFV 216

Query: 247  RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R    D YLK   EM  +FS  PEA+  T++I  RC F L   A   P  +       Q+
Sbjct: 217  RERHADRYLKPPQEMARLFSRYPEAVARTMDIVERCRFSLDDLAYQYPDEVSVPGQTPQQ 276

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E              L   A A+ Y      +  Q L+ ELN+I RM+++ YFL V  
Sbjct: 277  ALET-------------LTWEAAARTYPEGIPDEVCQSLNHELNLIGRMQYAPYFLTVNS 323

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             + +A+  +I +  GRGS A S   Y L IT IDP R SLLFERF++ +R   PD D+DF
Sbjct: 324  IVHYARSQDI-LCQGRGSAANSAVCYVLGITAIDPARNSLLFERFVSEERGEPPDIDVDF 382

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR++VI++V   YG +R A        +AK ALRDVG+ + +P   +  L   I   
Sbjct: 383  EHARREQVIQWVYEHYGRDRAALTAVVIRYRAKGALRDVGKVMGLPEDLIRTLSGQI--- 439

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              H    +   D        L+D  +   L++++ L G  RH S H  G V+    L +L
Sbjct: 440  --HGWGRKLDDDALNDTGIDLSDRRIRLTLDLARCLIGAPRHLSQHPGGFVLTHDRLDEL 497

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+         + +++   I+    +K D L L  LT ++K LD L + +G    L  I
Sbjct: 498  VPIEPASMEQRQIIEWDKDDIDVLKFMKVDILALGMLTCMKKGLDLLGEHKGQHFTLQSI 557

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D + 
Sbjct: 558  PGEDPRTYAMIRKADTIGVFQIESRAQMSMLPRLKPRVFYDLVIEVAIVRPGPIQGDMVH 617

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+ G E+     P ++ +L +T G+ ++QEQ MQ+A + +G++ +EAD LRRAM  
Sbjct: 618  PYLRRREGLEREDYPTPELEAVLSKTLGIPLFQEQAMQVAMICAGFTAAEADQLRRAMAT 677

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    + + + R I G   NG  +  A  I++ L  F  YGF +SHAA++A+++Y ++W
Sbjct: 678  FKNTGTVSQFQTRLIEGMRANGYDEEFAERIYQQLEGFGSYGFPESHAASFAILAYSSSW 737

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------G 831
            MK  +P  FLA+ +  +        +  +DAR+  ++I P  VN    D  +       G
Sbjct: 738  MKCTHPDVFLASLLNSQPMGFYAPAQLVRDAREHGVEIRPVCVNASRWDSTLEGPESPNG 797

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               +   ++ +KG+    A  I+ A A +PF S++D   R   K        +L      
Sbjct: 798  LFAVRLGMSLVKGLANDDAARIVAARASRPFTSVDDLWRRAGVKA------AALTHLAEA 851

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---ITLEKFSVENS 948
            D F         SL   ++ A W  K   ++   +FA  + T   +   + L+       
Sbjct: 852  DAF-------RPSLGLARREALWAIKALRDEPLPLFAAAQVTREAEEPDVLLQPMRDGAE 904

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             VR  N    LG     HPL   +  L++ GI    +++    G  + +A +V+ +Q+  
Sbjct: 905  VVRDYNR---LGLSLRDHPLAFLRKDLQEQGILPCRQALNAKDGKRLTVAGLVLVRQRPG 961

Query: 1009 TRKG 1012
            + +G
Sbjct: 962  SAEG 965


>gi|227505308|ref|ZP_03935357.1| error-prone DNA polymerase [Corynebacterium striatum ATCC 6940]
 gi|227198106|gb|EEI78154.1| error-prone DNA polymerase [Corynebacterium striatum ATCC 6940]
          Length = 1013

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 250/774 (32%), Positives = 366/774 (47%), Gaps = 70/774 (9%)

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +L++  +M  +F D PE +  TV +   CSF     AP LP F   E  D    E   L 
Sbjct: 224  WLRSGEQMAQLFPDRPELIAETVAVLSECSFTWDALAPNLPDF---EVPD-GYTEMTWLE 279

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQR----LDFELNVIARMKFSGYFLIVADFIQWAK 368
            +      E R A           D ++R    + +EL VI ++ F GYFLIV D + + K
Sbjct: 280  HLTWERAEERYAS-------RPADVQERAWKQIAYELGVIEQLTFPGYFLIVCDLVDFCK 332

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            ++NI +  GRGS A S   +AL IT+ +P+   LLFERFL+PDR   PD DID    RR+
Sbjct: 333  RSNI-LCQGRGSAANSAVCFALGITNAEPISAGLLFERFLSPDRDGPPDIDIDIESGRRE 391

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YV  KYG ER AQ+    + + K A RD  RAL  P    D   K +   P   V 
Sbjct: 392  EVIQYVYEKYGRERAAQVANVITYRRKGATRDAARALGYPQGSADSWSKGLSQPPGDVVK 451

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            L                         +++  G  RH   H+ G+V+ DRP++ +VPM   
Sbjct: 452  L-------------------------AEQFLGQPRHLGIHSGGMVLCDRPIADVVPMEWA 486

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
                  V Q++      AGL+KFD LGL  L  L    D + +  G KV+L  +   + E
Sbjct: 487  RMEKRSVLQWDKDDCAAAGLVKFDLLGLGMLEALHHMQDLVEETTGHKVNLWELDLAEKE 546

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRK 665
             Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI    V  Y  R+
Sbjct: 547  VYDMLCRADAVGVFQVESRAQLSTLPRLKPRKFFDLVVEVALIRPGPIQGGSVHPYLRRR 606

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEE 724
            +GKE +   HP+++  L +T G+ ++QEQ+MQIA   +G+S +EAD LRRAMG K+    
Sbjct: 607  DGKEAVTYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFSGAEADDLRRAMGSKRSPAR 666

Query: 725  MDKQKERFISG-ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            M   ++RF  G A  NGI    A  ++  +  FA YGF +SH+ ++A + Y +AWMK HY
Sbjct: 667  MAAIRQRFYDGLAQTNGIVGETADKLWNKIVAFAAYGFPESHSQSFASLVYFSAWMKYHY 726

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYS 838
            P +F    +  +       +   QDAR+  + ++P  VN      +      G+  I   
Sbjct: 727  PAQFCVGLLRAQPMGFYSPQSLIQDARRHGVAVLPLDVNASGCQARAVVQDGGEVAIRLG 786

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L  IKG+G   A+ I +A A  PF  + D   R D   L+   +E+L  AGALDCFG SR
Sbjct: 787  LNLIKGLGEKAAQRIEDACAQAPFQDIADLSRRAD---LSVEHVEALAGAGALDCFGLSR 843

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             Q L         A      R      + A    +       E  + + +S         
Sbjct: 844  RQALWQ-------AGVAATERAGMLPGLSAISAPSLPGMSAFELMASDVAST-------- 888

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             G      P+++ +  L    +    +      G  +R+A +V  +Q+ +T  G
Sbjct: 889  -GVTHDKQPMELVRAALNDAHVCTAAQLRQVPDGTRVRIAGIVTHRQRPQTAAG 941



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 17/111 (15%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S +F  L   SSYS L+GA     ++ +        +A+ D +  +  ++F++ A   G+
Sbjct: 10  SVAFAELHAVSSYSFLDGASEPEELVARAVELGLCGLALVDKDGFYGLMKFAEAAARVGL 69

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
             + G +L +                 +   + +L  T EGY+RL  L+++
Sbjct: 70  PAVFGAELSL-----------------SDAPLTVLARTPEGYRRLSRLIAQ 103


>gi|296136343|ref|YP_003643585.1| DNA polymerase III, alpha subunit [Thiomonas intermedia K12]
 gi|295796465|gb|ADG31255.1| DNA polymerase III, alpha subunit [Thiomonas intermedia K12]
          Length = 1037

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 287/949 (30%), Positives = 456/949 (48%), Gaps = 80/949 (8%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +V L   S++S L GA     ++++        +A+TD  +L   +     A AAG+ 
Sbjct: 5   PDYVELHCRSNFSFLTGASHPEELVERAHELHYAGLALTDECSLAGIVRAHGAAKAAGLP 64

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G Q  ++  +  +       PF    ++V+L     GY  L E ++R+      K S
Sbjct: 65  LLVGVQFAVEGDEKTR-----TPPF----TLVVLACNLNGYGNLCEFITRLRRASP-KGS 114

Query: 129 VRICLSWLQEIGTEGL---IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            R+     Q I  E L   ++L   S    D       + +  +        F  R+++ 
Sbjct: 115 YRLD---RQSITGETLADCVVLAVPSRQATDAGLLELGAWLLAR--------FTGRVWLA 163

Query: 186 LQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           ++ HR  D  R  + +Q LA    +PLVA  +            D L A+       +  
Sbjct: 164 VELHRRLDDERWLERLQDLAEATAIPLVAAGDVHMHRRSRKPLQDTLTAI-------RLG 216

Query: 245 RPRVTPDHYLKN------RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           RP     H L+       RS +    +   E L  T+ +A RC F L       P    K
Sbjct: 217 RPIADCGHALQPNAERHLRSRLRLALTYPAELLAETLRVAARCRFSLDELRYRYP----K 272

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
           E     +  +  LR +   G   R   G  AK    QD    L+ EL +IA + ++ YFL
Sbjct: 273 EVIPAGETADGYLRRRVYEGAGRRWPDGLHAK---VQDL---LEHELALIAELGYAHYFL 326

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V D + +A+  +I +  GRGS A S   YAL IT++DP +  +LFERF++ +R   PD 
Sbjct: 327 TVDDIVAFARSRHI-LCQGRGSAANSAVCYALGITEVDPEQQQVLFERFISKERNEPPDI 385

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DF  +RR+EVI+Y+  KYG +R A        + K+ALRDVG+AL      VDRL + 
Sbjct: 386 DVDFEHERREEVIQYLYAKYGRDRAALTAAVIRYRPKSALRDVGKALGFDLETVDRLARN 445

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADP---SVDRLLEISQKLEGLYRHASTHAAGIVIG 535
           +     H    + +A + R  E  L DP    V + + + ++L G  RH S H  G V+ 
Sbjct: 446 V-----HWWDGREVARE-RLEEVGL-DPDALGVQQWMALVRQLLGFPRHLSQHTGGFVLT 498

Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
           + PLS+LVP+      +  V +++   ++ AGL+K D L L  LT ++K+LD + Q  G 
Sbjct: 499 EGPLSRLVPIENASMPERTVIEWDKDDLDAAGLLKVDILALGMLTAIRKALDAIGQSLGQ 558

Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              +  IP +D +TY +L    ++G+FQ+ES   +  L  +QP C  D++   ++ RPGP
Sbjct: 559 TFAMQDIPREDPQTYDMLCQADSVGVFQVESRAQQGMLPRLQPRCFYDLVIETAIVRPGP 618

Query: 655 IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           I   +V  Y NR+ GKE +V     ++ +L+ T GV ++QEQVMQIA + +G+S  EAD 
Sbjct: 619 IQGGMVHPYLNRRQGKEVVVYPSKDLESVLQRTLGVPVFQEQVMQIAMVAAGFSAGEADG 678

Query: 713 LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           LRRAM   +    ++K ++R I+G ++ G S   A +I+E +  F++YGF +SHAA++A+
Sbjct: 679 LRRAMAAWRRTGSLEKYRDRLIAGMTERGYSADFAQSIYEQVQGFSEYGFPESHAASFAL 738

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
           + Y +AW+K H+P EFL A +  +        +  QDA++  + + P  V     D  + 
Sbjct: 739 LVYASAWIKRHHPAEFLMALLNSQPMGFYTPSQLVQDAKRHGVTVRPVDVLHSDWDCTLE 798

Query: 832 DNRIY----YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           +   Y      L  +KG+G      I  A   +P    ED   R    +L+   L  L  
Sbjct: 799 EAVPYPAVRLGLRLVKGLGREAGLRIAAARMSRPPVDAEDLAKRA---QLDTMALRQLAA 855

Query: 888 AGALDCF-GYSRMQLLQS---------LDNIQKYAQWVEKNRTNKHENI 926
           A AL    G+ R Q+ ++         LD+      W+E     + E+I
Sbjct: 856 ADALRSLSGHRRQQVWEATAVERMPALLDDAAPQEDWLELPAPPEGEDI 904


>gi|254365986|ref|ZP_04982031.1| DNA polymerase III (alpha chain) dnaE2 (DNA nucleotidyltransferase)
           [Mycobacterium tuberculosis str. Haarlem]
 gi|134151499|gb|EBA43544.1| DNA polymerase III (alpha chain) dnaE2 (DNA nucleotidyltransferase)
           [Mycobacterium tuberculosis str. Haarlem]
          Length = 1090

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 223/656 (33%), Positives = 358/656 (54%), Gaps = 36/656 (5%)

Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
           +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +       E++ LR
Sbjct: 296 HLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPD----GHTEDSWLR 351

Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
           +  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D  ++ + N+I
Sbjct: 352 SLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDITRFCRDNDI 406

Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
            +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID   D+R++VI+
Sbjct: 407 -LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIESDQREKVIQ 465

Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
           YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K + +           
Sbjct: 466 YVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSH-------WTGQ 518

Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
           ADD         D   +++++++ ++  L RH   H+ G+VI DRP++ + P+     ++
Sbjct: 519 ADD--------VDGIPEQVIDLATQIRNLPRHLGIHSGGMVICDRPIADVCPVEWARMAN 570

Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHL 611
             V Q++       GL+KFD LGL  L+ L  + D +A+ +G++VDL+ +   +   Y +
Sbjct: 571 RSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLDLSEPAVYEM 630

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
           L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  Y  R+NG +
Sbjct: 631 LARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHPYIRRRNGVD 690

Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQ 728
            ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG K+  E M + 
Sbjct: 691 PVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSKRSTERMRRL 750

Query: 729 KERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
           + RF  G  + +G    +   I+E L  FA++GF +SHA ++A + + +AW K H+P  F
Sbjct: 751 RGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAWFKLHHPAAF 810

Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIYYSLAAIKGV 845
            AA +  +       +    DAR+  + +  P VN              +   L A++ +
Sbjct: 811 CAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVRLGLGAVRYL 870

Query: 846 GTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
           G   A  ++ E +A+ PF SL D  SRV   +L+   +E+L  AGAL CFG SR +
Sbjct: 871 GAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFGMSRRE 923



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 63/112 (56%), Gaps = 7/112 (6%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    ++ 
Sbjct: 57  AYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELDVRT 116

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMY 120
           + G +L      +L  T + + P P  P +++L    EGY+RL  +L +R++
Sbjct: 117 VFGAEL------SLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAARIW 162


>gi|16262942|ref|NP_435735.1| DnaE3 DNA polymerase III alpha chain [Sinorhizobium meliloti 1021]
 gi|71151852|sp|Q92ZJ6|DNE22_RHIME RecName: Full=Error-prone DNA polymerase 2
 gi|14523588|gb|AAK65147.1| DnaE3 DNA polymerase III alpha chain [Sinorhizobium meliloti 1021]
          Length = 1087

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 294/1026 (28%), Positives = 482/1026 (46%), Gaps = 88/1026 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV + +S L  A S   +          A+ + D N+L   +   + + A G++ +
Sbjct: 3    YAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASRATGLRLV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+LD  +QD +              SI++  +    Y RL    +R+  L +G+    
Sbjct: 63   VGCRLD--LQDGM--------------SILVYPTDRAAYSRL----TRLLTLGKGRGGKA 102

Query: 131  ICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             C+    ++    EGLI    G   P D A      +V   +L    ++FGDR YV+L  
Sbjct: 103  NCIIHFDDVALYAEGLI----GILVP-DLA-----DEVCAVQLRKIAEVFGDRAYVSLCL 152

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK--DR 245
            R R  D+ +  ++  LA  H +  + TN+ LF      +  DV+  +     +     +R
Sbjct: 153  RRRPNDQLQLHELTNLAVKHRVKTIVTNDVLFHEHGRRQLQDVVTCIRTGMTIDDVGFER 212

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R   D YLK   EM  +F   PEAL  T+EI  RC F L+      P    +E   +  
Sbjct: 213  ER-HADRYLKPPEEMARLFPAYPEALARTMEIVERCRFSLEELVYQYP----EEALILGM 267

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L++    G+  R  +G      H +   + +  EL +I  MK++ YFL V   ++
Sbjct: 268  TAQQSLQHYTWEGVRARYPEGLPT---HVE---KTIRHELALIETMKYAPYFLTVFSIVR 321

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +
Sbjct: 322  YARSQGI-LCQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHE 380

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+++   YGH++ A   T    +AK A+RDVG+AL +P   +  L   I      
Sbjct: 381  RREEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALDLPEDLIRTLSSGI------ 434

Query: 486  PVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              S      + + RE  L +P   RL   L ++Q+L G  R+ S H  G V+    L  L
Sbjct: 435  -WSWSETVGERQVRELGL-NPDDRRLTLTLRLAQQLMGAPRNLSQHPGGFVLTHDRLDDL 492

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+     +D  V +++   IE    +K D L L  LT + K+   +++ +   +DL+ I
Sbjct: 493  VPIEPATMADRQVIEWDKDDIEALKFLKVDVLALGMLTCMAKAFALISEHKHEDIDLATI 552

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY ++    TLG FQ+ES      L  M+P    D++  V++ RPGPI  D + 
Sbjct: 553  PQEDPATYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAIVRPGPIQGDMVH 612

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+ GKEK+    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M  
Sbjct: 613  PYLRRREGKEKVEYPTPELEAVLHKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMAT 672

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    + + K++ ++G  +NG +K  A   F  L  F  YGF +SHAA++A+I+Y + +
Sbjct: 673  FKFTGGVSRFKDKLVNGMIRNGYTKEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNY 732

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GD 832
            +K ++P  F AA +  +        +  +DAR+  +++ P  +N    D  +      G 
Sbjct: 733  IKCYFPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSRWDCMLEPIDGSGG 792

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            + +   +  ++G+ T  A  I+ A AD+PF S++D   R          + SLV     D
Sbjct: 793  HAVRLGMRLVRGLATADAARIVAARADEPFTSVDDMWRRSGVP------VASLVELAEAD 846

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
             F       L SL   ++ A W  K   ++   +F       +  I  E+   E    + 
Sbjct: 847  AF-------LPSLSLERRDALWAIKALRDEPLPLFTAAADREARAIA-EQEEPEVELRQM 898

Query: 953  ENEQRVL------GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
             + Q V+      G     HPL   +  L K  I    +++    G  +  A +V+ +Q+
Sbjct: 899  TDGQNVVEDYSHTGLTLREHPLRFMRDDLAKRRIVTCAQAMTAHDGQWLMAAGLVLVRQR 958

Query: 1007 KKTRKG 1012
              + KG
Sbjct: 959  PGSAKG 964


>gi|162145940|ref|YP_001600398.1| putative DNA polymerase III alpha subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161784514|emb|CAP54047.1| putative DNA polymerase III alpha subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 1054

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 271/892 (30%), Positives = 429/892 (48%), Gaps = 93/892 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  LQV S +S L GA S   + ++  A    A+ I D N+L   ++    A A G++ +
Sbjct: 4   YAELQVTSYFSFLRGASSPLELFEQARALGIAALGIADRNSLAGMVQAHVAARATGVRLV 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +GC+LD+                   P +++  +    Y RL  L+S   L        R
Sbjct: 64  VGCRLDL----------------ADFPPVLVYPTDRAAYGRLCRLLS---LGKSRAGKAR 104

Query: 131 ICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             L W   +   +GL+ +               + +     L   K  F DR Y+ L   
Sbjct: 105 CHLLWEDLVAWGDGLLAILVPDV----------ADEACALHLRKLKDAFHDRAYMALTLL 154

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            R  D+ R   +  LA+   +P V TN+ LF + +     DV+  + H+T + +    R 
Sbjct: 155 RRPNDQMRLYALANLAHRARVPTVVTNDVLFHTHDRRILQDVVTCIRHNTTIDEAGFARE 214

Query: 249 T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D YLK   EM  +F   PEA++ T+ I  RC F L               DD+  + 
Sbjct: 215 RHADRYLKPPQEMARLFGRYPEAVDRTIAIMERCRFSL---------------DDLAYQY 259

Query: 308 ENELRNKAVAG------LEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYF 357
            +E+   +V G      LEV   +GA  + ++ +    +    L+ EL +I RM ++ YF
Sbjct: 260 PDEV---SVPGQTPQQALEVLTWEGA--RRFYPEGIPDEVTASLNHELALIGRMNYAPYF 314

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           L V   +++A+  +I +  GRGS A S   Y L IT IDP R SLLFERF++ +R   PD
Sbjct: 315 LTVNSIVRYARSQDI-LCQGRGSAANSAVCYVLGITAIDPARNSLLFERFVSEERGEPPD 373

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D+DF   RR++VI++V   YG ER A        +AK ALRDVG+ + +P   +  L  
Sbjct: 374 IDVDFEHARREQVIQWVYGHYGRERAALTAVVIRYRAKGALRDVGKVMGLPEDLIGTLSG 433

Query: 478 LIPNDPAHPVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            I             AD  +FR+    L+D  +   L+++  L G+ RH S H  G V+ 
Sbjct: 434 QI-------WGWSKNADPEQFRDTGIDLSDRRIRLTLDLACCLIGVPRHLSQHPGGFVLT 486

Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
              L +LVP+      D  + +++   I+    +K D L L  LT ++K LD LA+ +G 
Sbjct: 487 HDRLDELVPIEPAAMDDRQIIEWDKDDIDVLKFMKVDILALGMLTCMKKGLDLLAEHKGQ 546

Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
           +  L+ IP +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGP
Sbjct: 547 RFALATIPAEDPLTYAMIRRADTIGVFQIESRAQMSMLPRLKPRVFYDLVIEVAIVRPGP 606

Query: 655 I--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           I  D +  Y  R+ G E      P ++ +LK+T G+ ++QEQ MQ+A + + ++ SEAD 
Sbjct: 607 IQGDMVHPYLRRREGIEPEEYPTPELEKVLKKTLGIPLFQEQAMQVAMVCADFTASEADQ 666

Query: 713 LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           LRRAM   K    + + + + + G   NG ++  A  I++ L  F  YGF +SHAA++A+
Sbjct: 667 LRRAMATFKNTGTIGRFQTKLVEGMKANGYTEEFAERIYQQLEGFGSYGFPESHAASFAI 726

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN--------- 822
           ++Y ++W+K H+P  FLAA +  +        +  +DAR+  + I P  VN         
Sbjct: 727 LAYSSSWLKCHHPDVFLAALLNSQPMGFYAPAQLVRDAREHGVGIRPICVNASRWDSTLE 786

Query: 823 ---TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              T C  F V   R+  SL  +KG+    A  I+ A   +PF S++D   R
Sbjct: 787 GPETACGRFAV---RLGMSL--VKGLANADAARIVAARGARPFASVDDLWRR 833


>gi|225389825|ref|ZP_03759549.1| hypothetical protein CLOSTASPAR_03573 [Clostridium asparagiforme
           DSM 15981]
 gi|225044110|gb|EEG54356.1| hypothetical protein CLOSTASPAR_03573 [Clostridium asparagiforme
           DSM 15981]
          Length = 592

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 227/605 (37%), Positives = 353/605 (58%), Gaps = 31/605 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +F HL VH+ YSLL+G+  +  ++ +       ++A+TD   ++  ++F + A   GI+P
Sbjct: 2   AFTHLHVHTEYSLLDGSCKIRELVARAKELGMDSMAVTDHGVMYGVIDFYKAAREVGIKP 61

Query: 70  IIGCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           I+GC++ +         N  G+  +     +VLL    +GYQ L+++VS+ ++ D     
Sbjct: 62  ILGCEVYVAPGSRFDRENVNGEDRYY---HLVLLAENDQGYQNLMKIVSKGFV-DGFYYK 117

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
            R+    L E   EG+I L+   +G + R       + A +  L ++  FG    ++ LQ
Sbjct: 118 PRVDYELL-ETYHEGIIALSACLAGEVQRYLSRGMYEEAGRAALRYQDTFGKGNFFLELQ 176

Query: 188 RHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            H G D  ++    +++L+    + LVATN+  +   ED +AHD+L+ +     V+ ++R
Sbjct: 177 DH-GLDAQKQVNQGLLRLSRDLGIDLVATNDVHYTYAEDEKAHDILLCIQTGKKVADENR 235

Query: 246 PRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R     +Y K+  EM ++F    EA+ENT +IA+RC+  ++     LPRF   E  D  
Sbjct: 236 MRYEGGQYYCKSEEEMRALFPYALEAIENTHKIAQRCNVEIEFGVLKLPRFEVPEGFD-- 293

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVAD 362
                 L +  + G           + Y   D   R+RLD+EL+VI  M +  YFLIV D
Sbjct: 294 --SWTYLNHLCMQGFN---------RHYPEDDGTLRERLDYELDVIRTMGYVDYFLIVWD 342

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           FI +A+   I VGPGRGS AGS+ +Y+L IT+IDP+R++LLFERFLNP+R+SMPD D+DF
Sbjct: 343 FINYARSKGISVGPGRGSAAGSIVSYSLGITNIDPIRYNLLFERFLNPERVSMPDIDVDF 402

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C +RR EVI YV  KYG ++V QI+TFG+L AK  +RDVGR L +PY+  D + K+IPND
Sbjct: 403 CYERRQEVIDYVVEKYGKDQVVQIVTFGTLAAKGVVRDVGRVLDLPYALCDSIAKMIPND 462

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               +  +A+  +   ++A   D +V  L+++S++LEGL RH S HAAG+VIG R + + 
Sbjct: 463 LGMTLD-KALVMNPDLKKAYNEDETVHNLIDMSKRLEGLPRHTSMHAAGVVIGSRSIDEF 521

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--VKVDLSL 600
           VP+ R        TQF M  IE+ GL+K DFLGL+TLT++Q +++ +AQ+   V +DL  
Sbjct: 522 VPLSR-AADGTITTQFTMTTIEELGLLKMDFLGLRTLTVIQNAVN-MAQKNHHVSIDLDN 579

Query: 601 IPFDD 605
           I ++D
Sbjct: 580 IDYND 584


>gi|300779744|ref|ZP_07089600.1| DNA-directed DNA polymerase [Corynebacterium genitalium ATCC 33030]
 gi|300533854|gb|EFK54913.1| DNA-directed DNA polymerase [Corynebacterium genitalium ATCC 33030]
          Length = 1074

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 296/1037 (28%), Positives = 473/1037 (45%), Gaps = 120/1037 (11%)

Query: 11   FVHLQVHSSYSLLE---GALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            F  L   S+YS L    GA     I+ +       A+ + D +  + A++F++ A   G+
Sbjct: 62   FAELHAVSTYSFLSDTGGASEPEEIVARAQELGLSAVGLLDRDGFYGAVKFAEAAAEVGM 121

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
              + G +L +   D     +       +V  + ++    EGY+RL  L++  ++    K 
Sbjct: 122  PTVFGAELSLPRDDGGPGDD-------SVIPLSVIARGPEGYRRLSHLMAAAHMATGEKD 174

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              ++    L  I  E    L G  +          S Q A+ R+    + FG DR+    
Sbjct: 175  --KVLYPPLPVIADE----LAGTCT-------VLASWQWAD-RIDDLIEYFGPDRVVREF 220

Query: 187  QRHRGYDRYRESQVVQLAYTH------ELPLVATNNSLFLSEEDYE-AHDVLMAVAHSTV 239
                  +    ++ ++ AY H        P  AT     L+      A    M VA+  +
Sbjct: 221  TATMLPEDADHNEALR-AYPHVPAIISAAPGAATRQGARLAGAKRSLARRQAMGVAYCDL 279

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                        ++L++  +++++     + L  TV++A  C+F L + AP LP F   +
Sbjct: 280  HPMGA-------NWLRSGEQLLAMAPGCADMLAATVDLAAECAFTLNLVAPQLPLFPTPD 332

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR----LDFELNVIARMKFSG 355
              D    E + LR+      E R A           D R+R    ++ ELNVI ++ F G
Sbjct: 333  GHD----EMSWLRHLVRVRGEERYAS-------RPADVRERACTQIEHELNVIEQLGFPG 381

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV D + + ++++I +  GRGS A S   +AL IT+++P+   LLFERFL+PDR   
Sbjct: 382  YFLIVNDIVDFCRESDI-LCQGRGSAANSAVCFALGITNVEPISAQLLFERFLSPDRDGP 440

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD DID    RR+E I+YV   YG +  AQ+    + ++K A+RD  RAL  P    D  
Sbjct: 441  PDIDIDIESGRREEAIQYVYRTYGRDNAAQVANVITYRSKGAVRDAARALGYPQGAADAW 500

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             K +   P+   SL                         +++L G  RH   H+ G+VI 
Sbjct: 501  SKGLSEPPSLVSSL-------------------------AEQLRGQPRHLGIHSGGMVIC 535

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
            DRP++ +VP+      D  V Q++      AGL+KFD LGL  L  L   +D + +  G 
Sbjct: 536  DRPIADVVPVEWARMEDRSVVQWDKDDCASAGLVKFDLLGLGMLEALHHMIDLVRETTGR 595

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +V L  +P DD   Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGP
Sbjct: 596  EVRLWELPLDDASVYDMLARADAVGVFQVESRAQMNTLPRLKPREFFDLVVEVALIRPGP 655

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            I    V  Y  R++G+E I   HP+++  L  T G+ ++QEQ+MQIA   +G++ +EAD 
Sbjct: 656  IQGGSVHPYLRRRDGREPIEFDHPVLEKSLGRTLGIPLFQEQLMQIAVDAAGFTGAEADS 715

Query: 713  LRRAMG-KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            LRRAMG K+   +M+  ++RF  G  + NGI   +A  +++ +  FA YGF +SH+ ++A
Sbjct: 716  LRRAMGSKRSPAKMEALRQRFFDGCRETNGIDSAVADRLWQKIVAFAAYGFPESHSQSFA 775

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-TPC---- 825
             + Y +AW K +YP +F    +  +       +   QDAR+  I ++P SVN + C    
Sbjct: 776  SLVYFSAWFKHYYPAQFCVGLLRAQPMGFYSPQSLIQDARRHGIDVLPVSVNESGCEARC 835

Query: 826  -VDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
             VD   G D  I   +  IKG+G   A  I    A +PF  + D   R D   L+    E
Sbjct: 836  VVDAVSGADPAIRVGMNLIKGLGDKAAERI---EAAQPFTGIPDLSRRAD---LSVEHAE 889

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            +L  AGALDCFG  R Q L           W       + + +           I+    
Sbjct: 890  ALARAGALDCFGVDRRQAL-----------WQAGVAATERDGMLPGLS-----AISAPAL 933

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
               N+      +    G      P+++ +  L   G+    + ++   G  +R+A ++  
Sbjct: 934  PGMNAFELMAADVAATGVTPGLMPMEMLRGALGATGVVAAADLMSVEDGTRVRIAGVITH 993

Query: 1004 KQQKKTRKGSRIGWVTF 1020
            +Q+  T  G     VTF
Sbjct: 994  RQRPVTAGG-----VTF 1005


>gi|110636133|ref|YP_676341.1| DNA polymerase III, alpha subunit [Mesorhizobium sp. BNC1]
 gi|110287117|gb|ABG65176.1| error-prone DNA polymerase, DnaE-like protein [Chelativorans sp.
           BNC1]
          Length = 1096

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 278/910 (30%), Positives = 432/910 (47%), Gaps = 63/910 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  LQV S +S L GA S   +    A     A+ I D ++L   +   + A A GI+ +
Sbjct: 6   YAELQVTSHFSFLRGASSAEELFAAAALMGIEALGIVDRSSLAGIVRAWEAAKATGIRLV 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IGC+LD+                    SI++  +    Y RL  L+S    L +G+    
Sbjct: 66  IGCRLDLACG----------------ASILVYPTDRAAYARLCRLLS----LGKGRAGKG 105

Query: 131 IC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
            C L W           L   + G I       + +    RL   + +FGDR ++ L  R
Sbjct: 106 KCHLEWTD---------LARYAEGQIALLVPDEADETCTMRLRRLRDVFGDRAHLALTLR 156

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
            R  D+ R  ++  LA    +  V TN+ LF         DV+ A+ H+T V     R  
Sbjct: 157 RRPNDQMRLHELSGLASRMGVACVVTNDVLFHEPGRRVLQDVVTAIRHTTTVDALGFRRE 216

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D YLK+  EM  +F+  PEAL  TVEIA RC F L       P    +E DD     
Sbjct: 217 RHADRYLKSPEEMHRLFARYPEALARTVEIAERCRFSLDELVYQYP----EERDDPALSP 272

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
           +  L      G   R   G           R  L+ EL +IA++ ++ YFL V   +++A
Sbjct: 273 QQTLERLTWEGAASRYPDGL------PDTVRATLNHELGLIAQLDYAPYFLTVHSIVRFA 326

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           +   I +  GRGS A S   Y L +T IDP R  LLFERF++ +R   PD D+DF  DRR
Sbjct: 327 RSQGI-LCQGRGSAANSAVCYVLGVTSIDPDRNQLLFERFVSAERNEPPDIDVDFEHDRR 385

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           +EVI+++   YG +R A   T    +AK ALRDVG+AL +P   +  L   +       V
Sbjct: 386 EEVIQWIYATYGRDRAALCCTVIRYRAKGALRDVGKALGLPEDLISTLSTQVWGWSEQEV 445

Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             Q +   +      +AD  +   LE+++ L G  RH S H  G V+    L  LVP+  
Sbjct: 446 GPQHVDQLN----LNMADRRLRLTLELARALIGFPRHLSQHPGGFVLTRDRLDDLVPIEP 501

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                    +++   I+   ++K D LGL  L+ ++++LD LA+ +GV +DL+ IP +D 
Sbjct: 502 AAMEARQTIEWDKDDIDALRMMKVDVLGLGMLSCMRRALDLLAEHKGVALDLASIPAEDP 561

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNR 664
            TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  R
Sbjct: 562 RTYAMIRRADTLGTFQIESRAQMSMLPRLKPRTFYDLVIEVAIVRPGPIQGDMVHPYLRR 621

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKE 723
           + G+E +    P ++ +L +T GV ++QEQ M +A   +G++  EAD LRR+M   K   
Sbjct: 622 REGREDVHYPKPELEAVLGKTLGVPLFQEQAMMVAVSCAGFTPGEADQLRRSMATFKFTG 681

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            + K +++ ++G   NG  +  A+  F+ L  F  YGF +SHAA++A+I+Y ++W+K  +
Sbjct: 682 GVSKFRDKLVAGMVANGYEEAFALATFKQLEGFGSYGFPESHAASFALIAYASSWVKCWH 741

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVDFKVGDNR---IYY 837
           P  F  A +  +        +  +DAR   ++I P  +N+    C      D     +  
Sbjct: 742 PDVFACALLNSQPMGFYADAQIVRDARDHGVEIRPVCINSSRWDCTLEPTADESRFAVRL 801

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR--VDSKKLNRRVLESLVFAGALDCFG 895
            +  +KG+       I+ A  +  F S++D   R  V +  L  R+ E+  F  A   FG
Sbjct: 802 GMRMVKGLPNRDVAAIVAAREELRFASVDDLWRRAGVPTAALT-RLAEADAFRPA---FG 857

Query: 896 YSRMQLLQSL 905
            +R + L ++
Sbjct: 858 LARREALWAI 867


>gi|218513826|ref|ZP_03510666.1| DNA polymerase III subunit alpha [Rhizobium etli 8C-3]
          Length = 276

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 168/245 (68%), Positives = 214/245 (87%), Gaps = 1/245 (0%)

Query: 444 AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREAR 502
           AQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA+P  L +AI ++ + +E  
Sbjct: 1   AQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPANPTPLSKAIEEEPKLQEEA 60

Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
             +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LVPMYRD RSD+PVTQFNMKW
Sbjct: 61  AKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKW 120

Query: 563 IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
           +E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP DD +TY +L+   T+G+FQ
Sbjct: 121 VEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGISVDLAAIPLDDKKTYEMLSRGETVGVFQ 180

Query: 623 LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
           +ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN RK+G E++ SIHP+ID +L
Sbjct: 181 VESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNARKHGDEELESIHPMIDHLL 240

Query: 683 KETQG 687
           KETQG
Sbjct: 241 KETQG 245


>gi|282864426|ref|ZP_06273482.1| DNA polymerase III, alpha subunit [Streptomyces sp. ACTE]
 gi|282560913|gb|EFB66459.1| DNA polymerase III, alpha subunit [Streptomyces sp. ACTE]
          Length = 1154

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 290/1066 (27%), Positives = 470/1066 (44%), Gaps = 70/1066 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL   S +SL  GA     + ++ A  +  A+A+TD + L   + F++    AGI+
Sbjct: 2    PGFTHLHTVSGFSLRYGASHPERLAERAAEREMDALALTDRDTLAGTVRFARACEDAGIR 61

Query: 69   PIIGCQLDI---DMQDNLKMTNQGKTPF-------PTVPSIVLLV-STAEGYQRLIELVS 117
            P+ G +L +           T++ +TP         + P +  L    A G+  L  LV+
Sbjct: 62   PLFGTELAVAPFAGGGGAGRTHRPRTPVRGGAFVDESAPRVTFLARDGAHGWAELCRLVT 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              +  D G       L     +  EGL +L G +S  +  A        A   L  +++L
Sbjct: 122  AAHAPDMGAADTGQPLVGRAALPAEGLTVLLGPAS-EVGAALAAGRPDRAAALLAPWREL 180

Query: 178  FGDRLYVNLQRH----RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +GD L +    H     G    R  ++ V  A    +  V TN   +         DVL 
Sbjct: 181  YGDALRLEAVHHGRAGTGPGSLRLAARTVGFAADQGVRAVLTNAVRYADPGQGPVADVLD 240

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARRC 281
            +      V  +  P  + + +LK+   M      +  A           L  T   A  C
Sbjct: 241  SARRLVPVDPRRSPLDSGERWLKDARAMRETAERITSAAGLGPGAGERLLAETRHTADAC 300

Query: 282  SF-------ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
                     +  VH P  P  +  E    ++  +  L ++A AG+ +R   G        
Sbjct: 301  RVDPVDDLGLGSVHFPE-PHLVGAE----RRTAQRVLASRAAAGMVLRGLDGR------- 348

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
            +DY +R+  EL++IA   F+ YFL VA  +   K   I V   RGSGAGS+  + L I  
Sbjct: 349  RDYWERMHHELDIIAHHGFASYFLTVAQVVDDVKGMGIRVA-ARGSGAGSLVNHLLGIAH 407

Query: 395  IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
             DP+   LL ERFL+  R  +PD DID    RR EV R +  ++G ERVA +    + + 
Sbjct: 408  ADPVEHGLLMERFLSKRRFVLPDIDIDVESARRLEVYRAIIGRFGAERVATVSMPETYRV 467

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            + A+RDVG AL M  ++ DRL K  P+  A      A+ +    RE         RL E+
Sbjct: 468  RHAIRDVGAALSMDPAETDRLAKAFPHIRARDAR-AAMEELPELREVAGRKERYGRLWEL 526

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
             + L+ L R  + H  G+++ D  L +  P+        P+ QF+   +E  GL+K D L
Sbjct: 527  VEALDALPRGIAMHPCGVLLSDDSLLRRTPVVPTSGEGFPMAQFDKDDVEHLGLLKLDVL 586

Query: 575  GLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            G++  + +  ++  L +  G +VDL  +P DD ETY L+ +  TLG FQ+ES G R  + 
Sbjct: 587  GVRMQSAMAHAVTELERASGQEVDLDAVPPDDPETYRLIKSTETLGCFQIESPGQRDLVG 646

Query: 634  GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
             +QP    D++  +SL+RPGP+  D +  +   ++G+  +   HP ++  L++T GV+++
Sbjct: 647  RLQPATFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRYPHPDLEGPLRDTYGVVVF 706

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
             EQ++++  +++G    EAD +RR +     E   + K  F   A++ G    +    +E
Sbjct: 707  HEQIIEMVDIMTGCGRGEADRVRRGLSD--PESQGRIKVWFALRAAERGYGAEVVDRAWE 764

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            ++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+
Sbjct: 765  IVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARR 823

Query: 812  FNIQIMPPSVNTPCVDFK---VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
              + ++P  VN          V +  ++    A+  V   +   +    A +P+ SL DF
Sbjct: 824  RGVPVLPLDVNRSAAAHGIELVSEKGVWGLRLALSDVHGISEAEVARIEAGQPYSSLLDF 883

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF- 927
              R    +  +   E L   GALD FG +R  LL  L  + +  +          +    
Sbjct: 884  WQRA---RPGKPAAERLAQVGALDAFGANRRDLLLHLSELHRAQRGAGARGGAGAQLPLG 940

Query: 928  -AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
              H  GT    + L      N + R   E  VL    S H +  +   L ++G    +  
Sbjct: 941  DGHRTGT----VGLPDL---NDAERLSAELGVLSMDVSRHLMGDHHTFLEELGALSAKRL 993

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 G  + +A    + Q    R G R+ + T  +     +  FF
Sbjct: 994  REAAHGETVLVAGAKAATQTPPVRSGRRVVFTTLDDGTGLVDLAFF 1039


>gi|313808664|gb|EFS47122.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL087PA2]
 gi|313819151|gb|EFS56865.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL046PA2]
 gi|313820880|gb|EFS58594.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL036PA1]
 gi|313823290|gb|EFS61004.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL036PA2]
 gi|313826186|gb|EFS63900.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL063PA1]
 gi|314925973|gb|EFS89804.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL036PA3]
 gi|314960687|gb|EFT04788.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL002PA2]
 gi|314979513|gb|EFT23607.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL072PA2]
 gi|314986415|gb|EFT30507.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL005PA2]
 gi|314988502|gb|EFT32593.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL005PA3]
 gi|315085135|gb|EFT57111.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL002PA3]
 gi|315090069|gb|EFT62045.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL072PA1]
 gi|327330102|gb|EGE71854.1| error-prone DNA polymerase [Propionibacterium acnes HL096PA3]
 gi|327448373|gb|EGE95027.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL013PA2]
 gi|328755488|gb|EGF69104.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL020PA1]
          Length = 1031

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 279/919 (30%), Positives = 436/919 (47%), Gaps = 107/919 (11%)

Query: 58  FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++
Sbjct: 1   MAEAAEACGLSTIIGSELSIGVPEP-----QNGVADPVGSHLLVLANGPEGYRRLAEALT 55

Query: 118 RMYLLDQGKQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
             YL++ G++   +  L  L E+      +LTG   G + +       Q AE  L     
Sbjct: 56  DAYLVEGGRKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGMLQ-AEAELRRLVD 114

Query: 177 LFG-DRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
           LFG D + V L  HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV
Sbjct: 115 LFGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAV 174

Query: 235 AHSTVVSQKDR---PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
                + + D    P   P   L++ +EM  +FS   +A++NTV +A R +F L+    +
Sbjct: 175 RARRSLDEMDGWLPP--GPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLK---SV 229

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            PR  +++  D      + LR+    G         +AK         RL  EL++I   
Sbjct: 230 RPRLPDQKVPD-GHTPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDR 280

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            F+GYFLIV+D +++A+   I +  GRGS A S   YAL IT +DP+ + L FERFL+  
Sbjct: 281 GFAGYFLIVSDIVEFAQSQGI-LCQGRGSAAASAVCYALGITVVDPVFYGLPFERFLSVL 339

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R   PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q
Sbjct: 340 REEEPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQ 399

Query: 472 VD--------RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            D        R    +P+DP  P     I DD               +  ++Q++ GL R
Sbjct: 400 QDAWSRQMERRSVPPLPHDPDGP----EIPDD---------------VTTLAQQVMGLPR 440

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
           H   H+AG+V+   P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L 
Sbjct: 441 HLGIHSAGMVLTREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALS 500

Query: 584 KSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            S D ++Q  G    L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D
Sbjct: 501 ISFDLISQHCGRFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYD 560

Query: 643 IIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
           +   + L RPGP+    V  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A 
Sbjct: 561 LAVEIGLIRPGPVQGGAVHPYIRRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMAT 620

Query: 701 LLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            +   + ++AD+LRRAMG K+  E +D  + +   G + NGI    A  I+  +  FA++
Sbjct: 621 TVGNCTAADADLLRRAMGSKRGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANF 680

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           GF +SHA ++A + Y +AW+K HYP  FLAA +  +            DAR+  +    P
Sbjct: 681 GFAESHALSFAGLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRP 740

Query: 820 SVNTPCV--DFKV--------------------------------------GDNR----- 834
            V    V  D ++                                      GD+R     
Sbjct: 741 DVARSSVGADLELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHF 800

Query: 835 -IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +   L+ + G+   TA  I+E    + F SL+D   RVD   L+   +E+L  AGA D 
Sbjct: 801 AVRLGLSDVSGINIETATRIVEERERESFASLDDLARRVD---LSGEEVEALALAGAFDD 857

Query: 894 FGYSRMQLLQSLDNIQKYA 912
              SR   L  +  I   A
Sbjct: 858 LVGSRRGALWQIGQINGVA 876


>gi|15891704|ref|NP_357376.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58]
 gi|71151849|sp|Q8UAY9|DNE21_AGRT5 RecName: Full=Error-prone DNA polymerase 1
 gi|15160162|gb|AAK90161.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58]
          Length = 1091

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 298/1040 (28%), Positives = 486/1040 (46%), Gaps = 104/1040 (10%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  LQV + +S L GA S + + ++       A+ + D N+L +     + A   G+
Sbjct: 3    APRYAELQVTTHFSFLRGASSCDELFEQAKNLGIEALGVVDRNSLAAIPRAYEAANNHGV 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + +IGC+LD+D   ++ +    +                  Y RL  L+S    + + + 
Sbjct: 63   RLVIGCRLDLDDDLSVLVYPMDRA----------------AYGRLCRLLS----VGKKRG 102

Query: 128  SVRIC-LSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                C LSW   +   EGLI++               +  +   RL   K  F DR Y+ 
Sbjct: 103  GKGKCRLSWDDLVAYGEGLIVVLLADL----------ADDLCALRLRRLKAAFADRAYMA 152

Query: 186  LQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L  R R  D+ R  ++  +A    +P V TN+ LF   E     DV+  + H+  + +  
Sbjct: 153  LSLRRRPNDQMRLFELSGMAQAAGVPTVVTNDVLFHVPERRMLQDVVTCIRHNCTIDEAG 212

Query: 245  -RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R     D Y+K   EM  +F+  PEAL  ++EIA+RC F L+      P   E+    +
Sbjct: 213  FRRERHADRYMKPPEEMHRLFARYPEALSRSLEIAKRCKFSLKELVYQYPE--ERSLPGL 270

Query: 304  QKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++  E +  +AV G   R   G   K   A      L  EL+V+ R++++ YFL V  
Sbjct: 271  TAQQALEKMVWEAVPG---RYPNGLPEKVEKA------LHHELDVVGRLQYASYFLTVNA 321

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS-LLFERFLNPDRMSMPDFDID 421
             +++A+  +I +  GRGS A SV  + L IT IDP  FS L+FERF++ +R   PD D+D
Sbjct: 322  IVRYARSKDI-LCQGRGSAANSVICFVLGITAIDPALFSNLVFERFVSENRGEPPDIDVD 380

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP-------YSQVDR 474
            F   RR+EVI++V + YG ++ A        + + ALRDVG+ L +P        SQV R
Sbjct: 381  FEHQRREEVIQWVYDTYGRDKAALCSVVTRYRGRGALRDVGKVLGLPEDLTKLLSSQVWR 440

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              + +       ++L    +D R + A           E++ +L G  RH S H  G V+
Sbjct: 441  WSEGVGEKQVKELNLNM--EDRRLKLA----------FELANQLVGTPRHHSQHPGGFVL 488

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRG 593
                L +LVP+     +D  + +++   I+    +K D L L  L+ +++  D L A+ G
Sbjct: 489  SHDRLDELVPIEPAAMNDRQIIEWDKDDIDIVKFMKMDCLALGMLSCMKRGFDLLEARTG 548

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             K DL+ +P DD  T+ ++    TLG FQ+ES      L  ++P    D++  V++ RPG
Sbjct: 549  EKYDLAAMPPDDPATFAMIQKADTLGTFQIESRAQMSMLPRLKPAKFYDLVIQVAIVRPG 608

Query: 654  PI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PI  D +  Y  R+ GKE ++   P ++ +LK+T GV ++QEQ M+IA   + ++  EAD
Sbjct: 609  PIQGDMVHPYLRRRQGKEPVLYEKPQLENILKKTLGVPLFQEQAMRIAMDCADFTADEAD 668

Query: 712  VLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRAM   K    + K KE+ ++G   NG  K  A  IF+ L  F  YGF +SHAA++A
Sbjct: 669  QLRRAMATFKNVGTISKFKEKLVTGMVANGYDKEFAERIFKQLEGFGSYGFPESHAASFA 728

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +I+Y ++W+K H+P  F  A +  +        +  +DAR   +++ P  VN    D  +
Sbjct: 729  LIAYASSWLKCHHPDIFCTAILNSQPMGFYAPAQIVRDARDHGVEVRPVCVNNSRFDCTL 788

Query: 831  ---------GDNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                     G+ R  +   L  +KG+    A  I+ A  D+PF S++D   R        
Sbjct: 789  EPTGKKNDKGEERFAVRLGLRMVKGLSNDHAADIVAARQDRPFASVDDLWRRAG------ 842

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
                  V A AL C   +    L SL   ++ A W  K   ++   +FA       +   
Sbjct: 843  ------VPAAALVCLAEAD-AFLPSLRLARREALWAIKALRDEPLPLFA--AAAIRENAV 893

Query: 940  LEKFSVENSSVR-------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
            +E+    + ++R          +   +G     HP+   +  L +  I    E+V    G
Sbjct: 894  IEELQEPSVALRPMTDGGEVVQDYGHVGLTLREHPMTFLRRDLSRRRIVTCAEAVRVRDG 953

Query: 993  NNIRLAAMVVSKQQKKTRKG 1012
              +  A +V+ +Q+  + KG
Sbjct: 954  TWLETAGLVLVRQRPGSAKG 973


>gi|315085031|gb|EFT57007.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL027PA2]
          Length = 1031

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 279/919 (30%), Positives = 436/919 (47%), Gaps = 107/919 (11%)

Query: 58  FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++
Sbjct: 1   MAEAAEACGLSTIIGSELSIGVPEP-----QNGVADPVGSHLLVLANGPEGYRRLAEALT 55

Query: 118 RMYLLDQGKQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
             YL++ G++   +  L  L E+      +LTG   G + +       Q AE  L     
Sbjct: 56  DAYLVEGGRKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGMLQ-AEAELRRLVD 114

Query: 177 LFG-DRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
           LFG D + V L  HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV
Sbjct: 115 LFGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAV 174

Query: 235 AHSTVVSQKDR---PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
                + + D    P   P   L++ +EM  +FS   +A++NTV +A R +F L+    +
Sbjct: 175 RARRSLDEMDGWLPP--GPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLK---SV 229

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            PR  +++  D      + LR+    G         +AK         RL  EL++I   
Sbjct: 230 RPRLPDQKVPD-GHTPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDR 280

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            F+GYFLIV+D +++A+   I +  GRGS A S   YAL IT +DP+ + L FERFL+  
Sbjct: 281 GFAGYFLIVSDIVEFAQSQGI-LCQGRGSAAASAVCYALGITVVDPVFYGLPFERFLSVL 339

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R   PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q
Sbjct: 340 REEEPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQ 399

Query: 472 VD--------RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            D        R    +P+DP  P     I DD               +  ++Q++ GL R
Sbjct: 400 QDAWSRQMERRSVPPLPHDPDGP----EIPDD---------------VPTLAQQVMGLPR 440

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
           H   H+AG+V+   P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L 
Sbjct: 441 HLGIHSAGMVLTREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALS 500

Query: 584 KSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            S D ++Q  G    L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D
Sbjct: 501 ISFDLISQHCGRFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYD 560

Query: 643 IIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
           +   + L RPGP+    V  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A 
Sbjct: 561 LAVEIGLIRPGPVQGGAVHPYIRRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMAT 620

Query: 701 LLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            +   + ++AD+LRRAMG K+  E +D  + +   G + NGI    A  I+  +  FA++
Sbjct: 621 TVGNCTAADADLLRRAMGSKRGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANF 680

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           GF +SHA ++A + Y +AW+K HYP  FLAA +  +            DAR+  +    P
Sbjct: 681 GFAESHALSFAGLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRP 740

Query: 820 SVNTPCV--DFKV--------------------------------------GDNR----- 834
            V    V  D ++                                      GD+R     
Sbjct: 741 DVARSSVGADLELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHF 800

Query: 835 -IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +   L+ + G+   TA  I+E    + F SL+D   RVD   L+   +E+L  AGA D 
Sbjct: 801 AVRLGLSDVSGINIETATRIVEERERESFASLDDLARRVD---LSGEEVEALALAGAFDD 857

Query: 894 FGYSRMQLLQSLDNIQKYA 912
              SR   L  +  I   A
Sbjct: 858 LVGSRRGALWQIGQINGVA 876


>gi|86360883|ref|YP_472770.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42]
 gi|86284985|gb|ABC94043.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42]
          Length = 1087

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 295/1028 (28%), Positives = 482/1028 (46%), Gaps = 92/1028 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV + +S L GA S   +          A+ I D N+L   +   + + A G++ +
Sbjct: 3    YAELQVTTHFSFLRGASSAEELFATAKLMGIAALGIADRNSLAGIVRALEASRATGLRLV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+LD+          QG        SI++  +    Y RL    +R+  L +G+    
Sbjct: 63   VGCRLDL----------QGGM------SIIVYPTDRTAYSRL----TRLLTLGKGRGGKA 102

Query: 131  ICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             C+  L+++   +EGLI +      P D             +L    ++FGDR YV+L  
Sbjct: 103  NCILHLKDVAHYSEGLIGILV-PDMPDDGCAV---------QLRKMAEIFGDRAYVSLCL 152

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK--DR 245
            R R  D+ R  ++  LA  H +  V TN+ LF      +  DV+  +   T +     +R
Sbjct: 153  RRRPNDQLRLHKLSNLAAQHRVKTVVTNDVLFHEPGRRQLQDVVTCIRTGTTIDDVGFER 212

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R   D YLK   EM  +F   PEAL  T EI  RC F L+      P    +E      
Sbjct: 213  ER-HADRYLKPPEEMARLFPRYPEALSRTAEIVERCRFSLEELVYQYP----EEALIPGM 267

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L +    G++ R  +G  A   H +   + +  EL++I  MK++ YFL V   ++
Sbjct: 268  TAQQSLEHYTWEGVKTRYPEGLPA---HVE---KTIRHELSLIETMKYAPYFLTVFSIVR 321

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +
Sbjct: 322  YARSQGI-LCQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHE 380

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+++   YGH++ A   T    +AK A+RDVG+AL +P   +  L   I      
Sbjct: 381  RREEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALGLPEDLIKALSSGI------ 434

Query: 486  PVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              S      +++ R   L +P   RL   L ++Q+L G  RH   H  G V+    L  L
Sbjct: 435  -WSWSETVGENQVRALGL-NPEDRRLALTLRLAQQLMGAPRHLGQHPGGFVLTHDRLDHL 492

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+     +D  V +++   +E   ++K D L L  LT + K+   + + +   ++L+ I
Sbjct: 493  VPIEPAAMADRQVIEWDKDDVEALKMMKVDVLALGMLTCMAKAFALIGEHKHQDLELATI 552

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY ++    TLG FQ+ES      L  M+P    D++  V++ RPGPI  D + 
Sbjct: 553  PQEDPATYAMIRRADTLGTFQIESRAQMSMLPRMKPKTFYDLVIQVAIVRPGPIQGDMVH 612

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+ GKEK+    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M  
Sbjct: 613  PYLRRREGKEKVEYPTPELEAVLHKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMAT 672

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    + + +++ +SG  +NG +   A   F  L  F  YGF +SHAA++A+I+Y + +
Sbjct: 673  FKFTGGVSRFQDKLVSGMIRNGYTMEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNY 732

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNR 834
            +K H+P  F AA +  +        +   DAR+  +++ P  +N    D  +    G  R
Sbjct: 733  IKCHFPDVFCAALLNSQPMGFYAPAQIVIDARKHGVEVRPVCINRSRWDSTLEEVEGTER 792

Query: 835  --IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              +   +  ++G+ T  A  I+ A AD+PF S++D   R          + SLV     D
Sbjct: 793  HSVRLGMRLVRGLATADAARIVAARADEPFASVDDMWRRSGVP------VASLVELAEAD 846

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--------SDKITLEKFS 944
             F       L SL   ++ A W  +   ++   +F                  + L + +
Sbjct: 847  AF-------LPSLRLERRDALWAIRALRDEPLPLFTAAAEREARAIAEQQEPDVELRQMT 899

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              ++ V  E+   V G     HPL   +  L +  I    E++A   G  + +A +V+ +
Sbjct: 900  DGHNVV--EDYSHV-GLTLREHPLRFLRADLTQRRIVTCAEAMAARDGKWLMVAGLVLVR 956

Query: 1005 QQKKTRKG 1012
            Q+  + KG
Sbjct: 957  QRPGSAKG 964


>gi|146306963|ref|YP_001187428.1| error-prone DNA polymerase [Pseudomonas mendocina ymp]
 gi|167016911|sp|A4XTN0|DNAE2_PSEMY RecName: Full=Error-prone DNA polymerase
 gi|145575164|gb|ABP84696.1| DNA polymerase III, alpha subunit [Pseudomonas mendocina ymp]
          Length = 1026

 Score =  367 bits (943), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 282/1022 (27%), Positives = 459/1022 (44%), Gaps = 87/1022 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  L   S++S   GA S   + ++ A     A+AITD   L   +   Q A   G+
Sbjct: 2    TPDYAELHCLSNFSFQRGASSARELFERAARLGYRALAITDECTLAGIVRAWQAARETGL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-RMYLLDQGK 126
              I+G ++                P    P +VLL     GYQ L  L++      ++G+
Sbjct: 62   ALIVGSEM----------------PIEGGPKLVLLAEDLAGYQALCRLITVARRRAEKGR 105

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              +      L+E     L  L          A +    Q ++      ++ F DRL++ +
Sbjct: 106  YRL------LREDFDTPLAGLL---------AIWLAEPQASDSEGAWLRQRFADRLWLGI 150

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            + HRG D   R  Q+  LA   ++P +A  +    +       D + A+     V++   
Sbjct: 151  ELHRGADDAARLRQLQALAARLQIPALACGDVHMHARGRRALQDCMTAIRQHLPVAEAG- 209

Query: 246  PRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              + P  + +L+ R E+  ++    E L+ T+ +A RC F L       P     E    
Sbjct: 210  AWLFPNGERHLRRREELAELYPQ--ELLDETLRVAARCHFELDQLKYQYP----HELVPA 263

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              +  + LR++   GL  R   GA  K       R +++ EL +I  +K+  YFL V D 
Sbjct: 264  GHDASSWLRHRVEEGLRWRWPDGASTK------VRTQVEHELQLITELKYESYFLTVHDI 317

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS--LLFERFLNPDRMSMPDFDID 421
            + WA+K +I +  GRGS A S   +AL IT+++P      LLFERFL+ +R   PD D+D
Sbjct: 318  VSWARKQHI-LCQGRGSAANSTVCFALGITELNPDNSGSRLLFERFLSRERNEPPDIDVD 376

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EVI+YV  +YG +R A      +     ALRDV +AL +P  QV  L      
Sbjct: 377  FEHERREEVIQYVFRRYGRQRAALTAVASTYHGAGALRDVAKALGLPPDQVGALADCCGR 436

Query: 482  DPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
               H      + D  R REA      PS+ R+L ++ +L G  RH S H  G VI + PL
Sbjct: 437  WSDH------MPDAERLREAGFDPDSPSLHRILTLAGELIGFPRHLSQHPGGFVISEHPL 490

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
              LVP+     ++  V Q++   ++  GL+K D L L  L+ L++    + + RG +  L
Sbjct: 491  QTLVPVENASMAERTVIQWDKDDLDLVGLLKVDILALGMLSALRRCFALIERYRGTRWTL 550

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
            + +P +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D
Sbjct: 551  ASLPQEDAATYAMISRADTVGVFQIESRAQMAMLPRLRPKTFYDLVIQVAIVRPGPIQGD 610

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+N +E +      + P+   T GV ++QEQVM++A + + YS  EAD LRR+
Sbjct: 611  MVHPYLRRRNDEEPVEYPSDELRPVFARTLGVPLFQEQVMELAMVAADYSPGEADELRRS 670

Query: 717  MGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M   K    ++  ++R  S   + G +      IF  +  F  YGF +SHAA++A+++Y 
Sbjct: 671  MAAWKRHGGLEPHRQRLTSRMLEKGYTAEFTARIFRQIEGFGSYGFPESHAASFALLTYA 730

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-- 833
            + W+K H P  +  A +           +  QDAR+  I++ P  V     D  +  +  
Sbjct: 731  SCWLKCHEPAAYACALVNSWPMGFYSPDQVLQDARRHGIEVRPADVRHSAWDCSLEPSDG 790

Query: 834  ---RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                I   L  ++G     A  I       PF  ++D C R     L+ R  E L  AGA
Sbjct: 791  EQPAIRLGLRLLRGFREEDALRIEATRQAAPFTDVDDLCRRA---TLDARARECLADAGA 847

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            L     +R +           A+W           +FA    +  + + L + +V    +
Sbjct: 848  LRGLAGNRYR-----------ARWAVAG-VEPQLPLFAGHS-SREEPVALPRPTVGEDLL 894

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +    G     HPL + +  LR    +   E      G  + +A +V+ +Q+ +T 
Sbjct: 895  ---TDYATFGTTLGPHPLALLRERLRAKRCRSSHELCTVEHGRPVSVAGLVIGRQRPQTA 951

Query: 1011 KG 1012
             G
Sbjct: 952  SG 953


>gi|166214646|ref|ZP_02240681.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166204168|gb|EDR48648.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Antiqua
           str. B42003004]
          Length = 949

 Score =  367 bits (941), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 270/891 (30%), Positives = 428/891 (48%), Gaps = 138/891 (15%)

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L+   +GY+ + EL++     +Q     R+ L  L     +G I+L     G        
Sbjct: 15  LIKNEQGYRDVCELMTLANKREQFYFVPRLALDQLAAAYAKGNIILLTSDIG-------- 66

Query: 162 NSSQVAEKRLLTFKKLFG--------DRLYVNLQRHRG--YDRYRESQVVQLAYTHELPL 211
               V ++R   F K+ G        D  Y  +  H    YD+    + +++A   ++  
Sbjct: 67  ---SVFQRR--DFAKIIGTLVTAGGRDNFYSVVYPHPTPFYDQI-NVRAMKVASALKIEP 120

Query: 212 VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP--DHYLKNRSEMV------SI 263
           VA   + + + +D +  D+   V ++  + Q  R R+    D+ +  R  ++      S+
Sbjct: 121 VAFYPAYYEAVDDADIKDIAHMVTNNIKIDQPHRLRIPHQRDNAVNGRRHLLEALKAFSV 180

Query: 264 FSDLP--EALENTVE--IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
             D+P   A+ +T +  I   C++      P LP+  +        +E   L   AVAGL
Sbjct: 181 RMDVPVTAAMASTTQDTIIEACTWRWHELPPALPKMAD--------DEPATLMKLAVAGL 232

Query: 320 EVRLAQGAIAKGYHAQDYR---QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             RL          A ++R    RL +E++ + R+ F GYFL+V D +  +++  IPVGP
Sbjct: 233 RKRLTTKEFGYTPPASEHRVYVDRLKYEMDTLTRLGFCGYFLMVRDLMNHSRETGIPVGP 292

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGS AGS+ A+ + IT++DP+R  LLFERF+NP+R+ +PD D+DF Q RR EVI Y+  
Sbjct: 293 GRGSSAGSLVAWCIGITNVDPIRHGLLFERFINPERLDLPDADLDFSQARRHEVIEYLNE 352

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
           +YG + VA I  F  L A +ALRD  R   +  +           D A     + + DDS
Sbjct: 353 RYGEDYVAGIPNFTYLGAASALRDTARIYGVDAA-----------DMAVSKEFKNLEDDS 401

Query: 497 -RFREARLADPSVDRL-------LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
               E R    S+D+         + + KL+ L R    HAAG+++   PL +  P+  +
Sbjct: 402 LSLEELREQLASLDKYATKYPEAFKAACKLQSLMRGFGRHAAGMIVAGVPLVERTPV--E 459

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHE 607
           +R +     F+ ++ E  GLIK D LGL TL LL  +  ++ +  G  ++L  IP DD +
Sbjct: 460 LRGNARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRYIKESTGEDINLDAIPLDDRK 519

Query: 608 TYHLLTTKGTLGIFQLESSGMRQALE----GMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
                    T G+FQLES  MR+ L+    G++P   + ++A  +L+RPGPI + ++  Y
Sbjct: 520 VLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTVVATTALFRPGPIQSGMLDDY 579

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            +   G     S+HP++D +  ET GVI+YQEQ M   +LL+G++++EAD +R+A+GKK 
Sbjct: 580 VSVAKGFMAPQSLHPVLDELTAETNGVILYQEQTMNATRLLAGFTMAEADGVRKAIGKKD 639

Query: 722 KEEMDKQKERFISGA--------------------------------------------- 736
            E+M    E+F+  A                                             
Sbjct: 640 MEKMKSMGEKFVVQAQAGWIDVEMEDGTTQRIHRAEHFKCEDGALRTVEEALEAGVKLPM 699

Query: 737 -------SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                  S+ G+S+T A  I++   K   Y FNKSH  AY++ISYQ+ W+KTHYP EF A
Sbjct: 700 AAVRVTGSQPGLSETKAKEIWDAFEKNGAYQFNKSHPVAYSLISYQSMWLKTHYPAEFFA 759

Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKG 844
           A++T+  ++  K +   +DA  + I ++PP VN      ++     G   +Y   +A+KG
Sbjct: 760 AALTILGED--KHQGLVKDALTYGIHVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAVKG 817

Query: 845 VGTTTARHIMEA--SADKPFDSLEDFCSRVDSK--KLNRRVLESLVFAGAL 891
                 + IM A       F+SLE F   V+ +    N RV ESL   GA 
Sbjct: 818 CSENGCQAIMRAREKVGGKFESLEQFEEAVEKRACACNSRVRESLQKVGAF 868


>gi|327333237|gb|EGE74959.1| error-prone DNA polymerase [Propionibacterium acnes HL097PA1]
          Length = 1031

 Score =  367 bits (941), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 279/919 (30%), Positives = 435/919 (47%), Gaps = 107/919 (11%)

Query: 58  FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++
Sbjct: 1   MAEAAEACGLSTIIGSELSIGVPEP-----QNGVADPVGSHLLVLANGPEGYRRLAEALT 55

Query: 118 RMYLLDQGKQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
             YL++ G++   +  L  L EI      +LTG   G + +       Q AE  L     
Sbjct: 56  DAYLVEGGRKGRPVHDLDHLAEIADGHWTVLTGCRKGAVRQGLVRGMLQ-AEVELRRLVD 114

Query: 177 LFG-DRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
           LFG D + V L  HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV
Sbjct: 115 LFGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAV 174

Query: 235 AHSTVVSQKDR---PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
                + + D    P   P   L++ +EM  +FS   +A++NTV +A R +F L+    +
Sbjct: 175 RARRSLDEMDGWLPP--GPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLK---SV 229

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            PR  +++  D      + LR+    G         +AK         RL  EL++I   
Sbjct: 230 RPRLPDQKVPD-GHTPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDR 280

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            F+GYFLIV+D +++A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  
Sbjct: 281 GFAGYFLIVSDIVEFAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVL 339

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R   PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q
Sbjct: 340 REEEPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQ 399

Query: 472 VD--------RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            D        R    +P+DP  P     I DD               +  ++Q++ GL R
Sbjct: 400 QDAWSRQMERRSVPPLPHDPDGP----EIPDD---------------VTTLAQQVMGLPR 440

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
           H   H+AG+V+   P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L 
Sbjct: 441 HLGIHSAGMVLTREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALS 500

Query: 584 KSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            S D ++Q  G    L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D
Sbjct: 501 ISFDLISQHCGRFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYD 560

Query: 643 IIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
           +   + L RPGP+    V  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A 
Sbjct: 561 LAVEIGLIRPGPVQGGAVHPYIRRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMAT 620

Query: 701 LLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            +   + ++AD+LRRAMG K+  E +D  + +   G + NGI    A  I+  +  FA++
Sbjct: 621 TVGNCTAADADLLRRAMGSKRGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANF 680

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           GF +SHA ++A + Y +AW+K HYP  FLAA +  +            DAR+  +    P
Sbjct: 681 GFAESHALSFAGLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRP 740

Query: 820 SVNTPCV--DFKV--------------------------------------GDNR----- 834
            V    V  D ++                                      GD+R     
Sbjct: 741 DVARSSVGADLELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDNGDHRRDTHF 800

Query: 835 -IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +   L+ + G+   TA  I+E    + F SL+D   RVD   L+   +E+L  AGA D 
Sbjct: 801 AVRLGLSDVSGINIETATRIVEERERESFASLDDLARRVD---LSGEEVEALALAGAFDD 857

Query: 894 FGYSRMQLLQSLDNIQKYA 912
              SR   L  +  I   A
Sbjct: 858 LVGSRRGALWQIGQINGVA 876


>gi|313793495|gb|EFS41542.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL110PA1]
 gi|313802915|gb|EFS44126.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL110PA2]
 gi|313839824|gb|EFS77538.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL086PA1]
 gi|314963556|gb|EFT07656.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL082PA1]
 gi|315079143|gb|EFT51148.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL053PA2]
 gi|327455700|gb|EGF02355.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL092PA1]
          Length = 1031

 Score =  367 bits (941), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 278/919 (30%), Positives = 435/919 (47%), Gaps = 107/919 (11%)

Query: 58  FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++
Sbjct: 1   MAEAAEACGLSTIIGSELSIGVPEP-----QNGVADPVGSHLLVLANGPEGYRRLAEALT 55

Query: 118 RMYLLDQGKQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
             YL++ G++   +  L  L E+      +LTG   G + +       Q AE  L     
Sbjct: 56  DAYLVEGGRKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGMLQ-AEAELRRLVD 114

Query: 177 LFG-DRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
           LFG D + V L  HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV
Sbjct: 115 LFGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAV 174

Query: 235 AHSTVVSQKDR---PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
                + + D    P   P   L++ +EM  +FS   +A++NTV +A R +F L+    +
Sbjct: 175 RARRSLDEMDGWLPP--GPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLK---SV 229

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            PR  +++  D      + LR+    G         +AK         RL  EL++I   
Sbjct: 230 RPRLPDQKVPD-GHTPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDR 280

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            F+GYFLIV+D +++A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  
Sbjct: 281 GFAGYFLIVSDIVEFAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVL 339

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R   PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q
Sbjct: 340 REEEPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQ 399

Query: 472 VD--------RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            D        R    +P+DP  P     I DD               +  ++Q++ GL R
Sbjct: 400 QDAWSRQMERRSVPPLPHDPDGP----EIPDD---------------VTTLAQQVMGLPR 440

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
           H   H+AG+V+   P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L 
Sbjct: 441 HLGIHSAGMVLTREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALS 500

Query: 584 KSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            S D ++Q  G    L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D
Sbjct: 501 ISFDLISQHCGRFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYD 560

Query: 643 IIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
           +   + L RPGP+    V  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A 
Sbjct: 561 LAVEIGLIRPGPVQGGAVHPYIRRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMAT 620

Query: 701 LLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            +   + ++AD+LRRAMG K+  E +D  + +   G + NGI    A  I+  +  FA++
Sbjct: 621 TVGNCTAADADLLRRAMGSKRGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANF 680

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           GF +SHA ++A + Y +AW+K HYP  FLAA +  +            DAR+  +    P
Sbjct: 681 GFAESHALSFAGLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRP 740

Query: 820 SVNTPCV--DFKV--------------------------------------GDNR----- 834
            V    V  D ++                                      GD+R     
Sbjct: 741 DVARSSVGADLELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHF 800

Query: 835 -IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +   L+ + G+   TA  I+E    + F SL+D   RVD   L+   +E+L  AGA D 
Sbjct: 801 AVRLGLSDVSGINIETATRIVEERERESFASLDDLARRVD---LSGEEVEALALAGAFDD 857

Query: 894 FGYSRMQLLQSLDNIQKYA 912
              SR   L  +  I   A
Sbjct: 858 LVGSRRGALWQIGQINGVA 876


>gi|313812386|gb|EFS50100.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL025PA1]
          Length = 1031

 Score =  367 bits (941), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 279/919 (30%), Positives = 435/919 (47%), Gaps = 107/919 (11%)

Query: 58  FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++
Sbjct: 1   MAEAAEACGLSTIIGSELSIGVPEP-----QNGVADPVGSHLLVLANGPEGYRRLAEALT 55

Query: 118 RMYLLDQGKQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
             YL++ G++   +  L  L EI      +LTG   G + +       Q AE  L     
Sbjct: 56  DAYLVEGGRKGRPVHDLDHLAEIADGHWTVLTGCRKGAVRQGLVRGMLQ-AEVELRRLVD 114

Query: 177 LFG-DRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
           LFG D + V L  HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV
Sbjct: 115 LFGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAV 174

Query: 235 AHSTVVSQKDR---PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
                + + D    P   P   L++ +EM  +FS   +A++NTV +A R +F L+    +
Sbjct: 175 RARRSLDEMDGWLPP--GPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLK---SV 229

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            PR  +++  D      + LR+    G         +AK         RL  EL++I   
Sbjct: 230 RPRLPDQKVPD-GHTPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDR 280

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            F+GYFLIV+D +++A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  
Sbjct: 281 GFAGYFLIVSDIVEFAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVL 339

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R   PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q
Sbjct: 340 REEEPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQ 399

Query: 472 VD--------RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            D        R    +P+DP  P     I DD               +  ++Q++ GL R
Sbjct: 400 QDAWSRQMERRSVPPLPHDPDGP----EIPDD---------------VTTLAQQVMGLPR 440

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
           H   H+AG+V+   P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L 
Sbjct: 441 HLGIHSAGMVLTREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALS 500

Query: 584 KSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            S D ++Q  G    L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D
Sbjct: 501 ISFDLISQHCGRFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYD 560

Query: 643 IIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
           +   + L RPGP+    V  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A 
Sbjct: 561 LAVEIGLIRPGPVQGGAVHPYIRRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMAT 620

Query: 701 LLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            +   + ++AD+LRRAMG K+  E +D  + +   G + NGI    A  I+  +  FA++
Sbjct: 621 TVGNCTAADADLLRRAMGSKRGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANF 680

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           GF +SHA ++A + Y +AW+K HYP  FLAA +  +            DAR+  +    P
Sbjct: 681 GFAESHALSFAGLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRP 740

Query: 820 SVNTPCV--DFKV--------------------------------------GDNR----- 834
            V    V  D ++                                      GD+R     
Sbjct: 741 DVARSSVGADLELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHF 800

Query: 835 -IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +   L+ + G+   TA  I+E    + F SL+D   RVD   L+   +E+L  AGA D 
Sbjct: 801 AVRLGLSDVSGINIETATRIVEERERESFASLDDLARRVD---LSGEEVEALALAGAFDD 857

Query: 894 FGYSRMQLLQSLDNIQKYA 912
              SR   L  +  I   A
Sbjct: 858 LVGSRRGALWQIGQINGVA 876


>gi|2996335|gb|AAC13215.1| DNA polymerase III alpha subunit homolog [Yersinia pestis KIM 10]
          Length = 1135

 Score =  366 bits (940), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 270/891 (30%), Positives = 428/891 (48%), Gaps = 138/891 (15%)

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L+   +GY+ + EL++     +Q     R+ L  L     +G I+L     G        
Sbjct: 61  LIKNEQGYRDVCELMTLANKREQFYFVPRLALDQLAAAYAKGNIILLTSDIG-------- 112

Query: 162 NSSQVAEKRLLTFKKLFG--------DRLYVNLQRHRG--YDRYRESQVVQLAYTHELPL 211
               V ++R   F K+ G        D  Y  +  H    YD+    + +++A   ++  
Sbjct: 113 ---SVFQRR--DFAKIIGTLVTAGGRDNFYSVVYPHPTPFYDQI-NVRAMKVASALKIEP 166

Query: 212 VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP--DHYLKNRSEMV------SI 263
           VA   + + + +D +  D+   V ++  + Q  R R+    D+ +  R  ++      S+
Sbjct: 167 VAFYPAYYEAVDDADIKDIAHMVTNNIKIDQPHRLRIPHQRDNAVNGRRHLLEALKAFSV 226

Query: 264 FSDLP--EALENTVE--IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
             D+P   A+ +T +  I   C++      P LP+  +        +E   L   AVAGL
Sbjct: 227 RMDVPVTAAMASTTQDTIIEACTWRWHELPPALPKMAD--------DEPATLMKLAVAGL 278

Query: 320 EVRLAQGAIAKGYHAQDYR---QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             RL          A ++R    RL +E++ + R+ F GYFL+V D +  +++  IPVGP
Sbjct: 279 RKRLTTKEFGYTPPASEHRVYVDRLKYEMDTLTRLGFCGYFLMVRDLMNHSRETGIPVGP 338

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGS AGS+ A+ + IT++DP+R  LLFERF+NP+R+ +PD D+DF Q RR EVI Y+  
Sbjct: 339 GRGSSAGSLVAWCIGITNVDPIRHGLLFERFINPERLDLPDADLDFSQARRHEVIEYLNE 398

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
           +YG + VA I  F  L A +ALRD  R   +  +           D A     + + DDS
Sbjct: 399 RYGEDYVAGIPNFTYLGAASALRDTARIYGVDAA-----------DMAVSKEFKNLEDDS 447

Query: 497 -RFREARLADPSVDRL-------LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
               E R    S+D+         + + KL+ L R    HAAG+++   PL +  P+  +
Sbjct: 448 LSLEELREQLASLDKYATKYPEAFKAACKLQSLMRGFGRHAAGMIVAGVPLVERTPV--E 505

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHE 607
           +R +     F+ ++ E  GLIK D LGL TL LL  +  ++ +  G  ++L  IP DD +
Sbjct: 506 LRGNARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRYIKESTGEDINLDAIPLDDRK 565

Query: 608 TYHLLTTKGTLGIFQLESSGMRQALE----GMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
                    T G+FQLES  MR+ L+    G++P   + ++A  +L+RPGPI + ++  Y
Sbjct: 566 VLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTVVATTALFRPGPIQSGMLDDY 625

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            +   G     S+HP++D +  ET GVI+YQEQ M   +LL+G++++EAD +R+A+GKK 
Sbjct: 626 VSVAKGFMAPQSLHPVLDELTAETNGVILYQEQTMNATRLLAGFTMAEADGVRKAIGKKD 685

Query: 722 KEEMDKQKERFISGA--------------------------------------------- 736
            E+M    E+F+  A                                             
Sbjct: 686 MEKMKSMGEKFVVQAQAGWIDVEMEDGTTQRIHRAEHFKCEDGALRTVEEALEAGVKLPM 745

Query: 737 -------SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                  S+ G+S+T A  I++   K   Y FNKSH  AY++ISYQ+ W+KTHYP EF A
Sbjct: 746 AAVRVTGSQPGLSETKAKEIWDAFEKNGAYQFNKSHPVAYSLISYQSMWLKTHYPAEFFA 805

Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKG 844
           A++T+  ++  K +   +DA  + I ++PP VN      ++     G   +Y   +A+KG
Sbjct: 806 AALTILGED--KHQGLVKDALTYGIHVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAVKG 863

Query: 845 VGTTTARHIMEA--SADKPFDSLEDFCSRVDSK--KLNRRVLESLVFAGAL 891
                 + IM A       F+SLE F   V+ +    N RV ESL   GA 
Sbjct: 864 CSENGCQAIMRAREKVGGKFESLEQFEEAVEKRACACNSRVRESLQKVGAF 914


>gi|313773082|gb|EFS39048.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL074PA1]
 gi|313810788|gb|EFS48502.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL083PA1]
 gi|313831126|gb|EFS68840.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL007PA1]
 gi|313834194|gb|EFS71908.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL056PA1]
 gi|314975021|gb|EFT19116.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL053PA1]
 gi|314976902|gb|EFT20997.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL045PA1]
 gi|314984774|gb|EFT28866.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL005PA1]
 gi|315081044|gb|EFT53020.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL078PA1]
 gi|315096590|gb|EFT68566.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL038PA1]
 gi|315107677|gb|EFT79653.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL030PA1]
 gi|327327972|gb|EGE69743.1| error-prone DNA polymerase [Propionibacterium acnes HL096PA2]
 gi|327444405|gb|EGE91059.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL043PA1]
 gi|327444584|gb|EGE91238.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL043PA2]
 gi|328762313|gb|EGF75800.1| error-prone DNA polymerase [Propionibacterium acnes HL099PA1]
          Length = 1031

 Score =  366 bits (940), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 278/919 (30%), Positives = 435/919 (47%), Gaps = 107/919 (11%)

Query: 58  FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++
Sbjct: 1   MAEAAEACGLSTIIGSELSIGVPEP-----QNGVADPVGSHLLVLANGPEGYRRLAEALT 55

Query: 118 RMYLLDQGKQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
             YL++ G++   +  L  L E+      +LTG   G + +       Q AE  L     
Sbjct: 56  DAYLVEGGRKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGMLQ-AEAELRRLVD 114

Query: 177 LFG-DRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
           LFG D + V L  HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV
Sbjct: 115 LFGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAV 174

Query: 235 AHSTVVSQKDR---PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
                + + D    P   P   L++ +EM  +FS   +A++NTV +A R +F L+    +
Sbjct: 175 RARRSLDEMDGWLPP--GPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLK---SV 229

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            PR  +++  D      + LR+    G         +AK         RL  EL++I   
Sbjct: 230 RPRLPDQKVPD-GHTPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDR 280

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            F+GYFLIV+D +++A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  
Sbjct: 281 GFAGYFLIVSDIVEFAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVL 339

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R   PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q
Sbjct: 340 REEEPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQ 399

Query: 472 VD--------RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            D        R    +P+DP  P     I DD               +  ++Q++ GL R
Sbjct: 400 QDAWSRQMERRSVPPLPHDPDGP----EIPDD---------------VTTLAQQVMGLPR 440

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
           H   H+AG+V+   P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L 
Sbjct: 441 HLGIHSAGMVLTREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALS 500

Query: 584 KSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            S D ++Q  G    L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D
Sbjct: 501 ISFDLISQHCGRFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYD 560

Query: 643 IIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
           +   + L RPGP+    V  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A 
Sbjct: 561 LAVEIGLIRPGPVQGGAVHPYIRRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMAT 620

Query: 701 LLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            +   + ++AD+LRRAMG K+  E +D  + +   G + NGI    A  I+  +  FA++
Sbjct: 621 TVGNCTAADADLLRRAMGSKRGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANF 680

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           GF +SHA ++A + Y +AW+K HYP  FLAA +  +            DAR+  +    P
Sbjct: 681 GFAESHALSFAGLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRP 740

Query: 820 SVNTPCV--DFKV--------------------------------------GDNR----- 834
            V    V  D ++                                      GD+R     
Sbjct: 741 DVARSSVGADLELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHF 800

Query: 835 -IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +   L+ + G+   TA  I+E    + F SL+D   RVD   L+   +E+L  AGA D 
Sbjct: 801 AVRLGLSDVSGINIETATRIVEERERESFASLDDLARRVD---LSGEEVEALALAGAFDD 857

Query: 894 FGYSRMQLLQSLDNIQKYA 912
              SR   L  +  I   A
Sbjct: 858 LVGSRRGALWQIGQINGVA 876


>gi|311744021|ref|ZP_07717827.1| error-prone DNA polymerase [Aeromicrobium marinum DSM 15272]
 gi|311313151|gb|EFQ83062.1| error-prone DNA polymerase [Aeromicrobium marinum DSM 15272]
          Length = 1133

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 301/1067 (28%), Positives = 481/1067 (45%), Gaps = 124/1067 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS YS L+GA    ++ ++       A+A+TD +    A  F++ A   G+  +
Sbjct: 57   YAELHCHSHYSFLDGASGPADLAEEAVRLGLSALALTDHDGFAGAPVFAEAAQEHGLATV 116

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L + +        Q     P    +++L   AEGY RL   ++  +L    K    
Sbjct: 117  FGAELSLGLPGP-----QNGVADPVGTHLLVLARGAEGYHRLAAAITDAHLHGDEKGRPV 171

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
              L  L   G +  I+LTG   G +  A        A   L     LFG D + V L  H
Sbjct: 172  YDLDQLAAHGRDHWIVLTGCRKGAVRHALATAGVSAAAAELDRLTALFGLDHVVVELTHH 231

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR--P 246
                D  R   +  LA  H LP+VAT N    +         + A+     ++  D   P
Sbjct: 232  GLPDDSRRNDALASLAADHGLPVVATGNVHHATPAGGRLAAAMAAIRARRSLADLDGWLP 291

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP-RFIEKECDDIQK 305
                 H L++ +EM + F+  P A+  +V IA + +F L+   P LP R +     ++  
Sbjct: 292  PSGAAH-LRSGAEMQARFARYPGAVARSVTIAEQIAFDLRSVTPRLPVRGVPAGHTNL-- 348

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR  A  G+  R A       +     R+R++ EL VIA   F GYFLIV D ++
Sbjct: 349  ---SWLRELADRGIARRYA-------HDPGPARERIERELAVIADKGFEGYFLIVHDIVR 398

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
             A++  I +  GRGS A S   YAL IT +D +R+ L FERFL   R   PD D+DF  D
Sbjct: 399  EARERGI-LCQGRGSSANSALCYALEITAVDSIRYGLPFERFLASTRDEEPDIDVDFDSD 457

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD-------RLCKL 478
            RR+EVI++V + YG    AQ+    + + ++A+RD  +AL     Q D       R   L
Sbjct: 458  RREEVIQWVYDTYGRRNAAQVANVITYRPRSAIRDAAKALGYSTGQQDAWSRSAERWGGL 517

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
             P+                   A L  P V    E++++L G  RH   H+ G+++ +RP
Sbjct: 518  EPD-------------------AELPAPVV----ELAEQLMGSPRHLGIHSGGMILTERP 554

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD 597
            + ++ P+ R   +D  V Q++    E  GL+KFD LGL  L  L  +   +    G +  
Sbjct: 555  IGEVCPIERARMTDRTVLQWDKDACEWMGLVKFDLLGLGMLGALDHTFGLVETHLGERWG 614

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  IP ++   + +L    ++G+FQ+ES      L  +QP    D+   ++L RPGPI  
Sbjct: 615  LDTIPKEEPGVFDMLCRADSIGVFQVESRAQIGTLPRLQPRSYYDLAIEIALIRPGPIQG 674

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              V  Y  R  G+E +   HP+++P+L+ T+GV ++QEQ+MQ+A +L G +  EAD+LRR
Sbjct: 675  GAVHPYIRRATGREPVTYPHPVLEPVLRRTKGVPLFQEQLMQMAIVLGGCTGDEADLLRR 734

Query: 716  AMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AMG K+  E +++ K++  +G +++GI+   A  I+  +  FA++GF +SHA ++A++ Y
Sbjct: 735  AMGSKRGIERIERLKDQLFTGMAEHGITGEAADAIYVTIQSFANFGFAESHALSFALLVY 794

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV--NTPCVDFKVGD 832
             ++W+K HYP  FLAA +  +       +    DAR   +    P +  +    D +  D
Sbjct: 795  ASSWLKLHYPAAFLAALLRNQPMGFYSPQSLVADARHHGVTTRGPDIVRSMATADLEPLD 854

Query: 833  NR---------------------------------------IYYSLAAIKGVGTTTARHI 853
             R                                       +   L A++GVG   A  +
Sbjct: 855  ARSVRASGLDSCLHREQPPMTRFDPDGVDPTTTHRRDEGLAVRLGLDAVQGVGAEVAARV 914

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            + A  ++PF  + D   R     L    +ESL  AGA D FG +R Q L +     +  Q
Sbjct: 915  VAAREERPFADMADVARRT---ALTVAQMESLATAGAFDSFGLTRRQALWNAGYTDRPDQ 971

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
                  T     +     G  + + TL        S R   ++         HP++  + 
Sbjct: 972  LPGTATTAPPPTL----PGMSAVETTLADL----WSTRISPDR---------HPMEHLRE 1014

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            +L    +     ++A   G  +R+A ++  +Q+  T  G     VTF
Sbjct: 1015 LLTSEQVLSVAGAMAGEHGRRVRVAGLITHRQRPMTASG-----VTF 1056


>gi|148243808|ref|YP_001220047.1| DNA polymerase III, alpha subunit [Acidiphilium cryptum JF-5]
 gi|146400371|gb|ABQ28905.1| error-prone DNA polymerase, DnaE-like [Acidiphilium cryptum JF-5]
          Length = 1082

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 298/1032 (28%), Positives = 477/1032 (46%), Gaps = 97/1032 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++V L   S +S L GA S + +  + A     A+AITD N L   +     A A  ++ 
Sbjct: 6    AYVELHCTSHFSFLRGASSCDELFAQAAHLGLEALAITDRNTLAGIVRAHVAAKANDMRL 65

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC+LD+     L +       +PT             Y RL  L+S   L  Q     
Sbjct: 66   IVGCRLDLTDGTALLV-------YPT---------DRPAYARLSRLLS---LGKQRGGKA 106

Query: 130  RICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
            +  L W   +   EGLI +     G  D A   N  ++A+         FGDR Y+ L  
Sbjct: 107  QCRLDWSDLVAYAEGLIGVL--VPGEADDACVRNLRRLAQS--------FGDRAYLALTL 156

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
            R R  D  R  ++  LA   ++P V TN+ LF + +     DV+  + H   +     R 
Sbjct: 157  RRRPNDALRLFELSNLAARAKVPTVVTNDVLFHARDRRILQDVVTCIRHGCTIDDAGFRR 216

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI--Q 304
                D YLK  +EM  +FS  PEAL  T EIA RC F L               D++  Q
Sbjct: 217  ERHADRYLKPPAEMHRLFSRYPEALARTQEIADRCLFSL---------------DELRYQ 261

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYFLIVA 361
              +EN L          +L     A+ Y A    +    L  EL +I  + ++ YFL V 
Sbjct: 262  YPDENVLPGLTTQEALTQLTWEGAAQRYPAGVPAEVVTILRHELRLIETLDYAPYFLTVN 321

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
              +++A+   I +  GRGS A S   + L IT IDP R  LLFERF++ +R   PD D+D
Sbjct: 322  SIVRFARSQGI-LCQGRGSAANSAVCFVLGITSIDPERNDLLFERFISEERREPPDIDVD 380

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+ V+++V + YG +  A   T    + K ALRDVG+AL +P   +  L   +  
Sbjct: 381  FEHERREIVMQWVFDTYGRDHAALCSTVIRYRTKGALRDVGKALGLPEDLITALNAQVWG 440

Query: 482  ------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                  +P H   L    +D R + A          ++++++L G  RH S H  G V+ 
Sbjct: 441  WSEGGIEPKHAAELHLNLEDRRLKLA----------IDLARELIGTPRHLSQHPGGFVLT 490

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
               L +LVP+      +  + +++   I+    +K D L L  L+ +++  D LAQ +G+
Sbjct: 491  RDRLDELVPIEPAAMDNRQIIEWDKDDIDALKFMKVDCLALGMLSCMKRGFDLLAQHKGI 550

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            ++DL+ IP +D  TY ++    TLG FQ+ES      L  M+P    D++  V++ RPGP
Sbjct: 551  ELDLATIPAEDPHTYAMIRRADTLGTFQIESRAQMVMLPRMKPRTFYDLVIEVAIVRPGP 610

Query: 655  I--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            I  D +  Y  R+ GKE +V   P ++ +L +T GV ++QEQ M++A   +G++ +EAD 
Sbjct: 611  IQGDMVHPYLRRREGKEAVVYPKPELEKVLGKTLGVPLFQEQAMRVAIECAGFTATEADQ 670

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRR+M   K    +   +++ +SG   NG  +  A   F  L  F  YGF +SHAA++A+
Sbjct: 671  LRRSMATFKFTGGVSHFRDKLVSGMVANGYEQEFAERTFSQLEGFGSYGFPESHAASFAL 730

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            I+Y ++W+K H+P  F AA +  +        +  +DA+   ++I P  VN    D  + 
Sbjct: 731  IAYASSWLKCHHPDVFCAALLNAQPMGFYAPAQIVRDAKDHGVEIRPVCVNASRWDCTLE 790

Query: 832  DNR------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                     +   L  +KGV       ++ A A+  F S++D   R            +L
Sbjct: 791  PTHDESRLAVRLGLRMVKGVANPHVAKMIAARANHLFASVDDLWRRAGVPT------AAL 844

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEK-- 942
            V     D F       L SL   ++ A W  K   ++   +FA         ++ L++  
Sbjct: 845  VQMAEADAF-------LPSLKLARRDALWAIKALRDEALPLFAAVANRTEQPVSELQEPV 897

Query: 943  FSVENSSVRFE--NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
            F+++  +   E   +   LG     HP+   +  LR+  I   ++ ++T  G  +  A +
Sbjct: 898  FALKPLTGGGEVVEDYVHLGLSLRSHPVAYLREDLRRERIVSCDQVMSTRDGKFLETAGI 957

Query: 1001 VVSKQQKKTRKG 1012
            V+ +Q+  + +G
Sbjct: 958  VLVRQRPGSARG 969


>gi|70731058|ref|YP_260799.1| error-prone DNA polymerase [Pseudomonas fluorescens Pf-5]
 gi|78099245|sp|Q4KAD4|DNAE2_PSEF5 RecName: Full=Error-prone DNA polymerase
 gi|68345357|gb|AAY92963.1| DNA polymerase III, alpha subunit, putative [Pseudomonas fluorescens
            Pf-5]
          Length = 1034

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 300/1035 (28%), Positives = 477/1035 (46%), Gaps = 97/1035 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  L   S++S   GA S   +  +  A    A+AITD   L   +   Q +   G++ 
Sbjct: 3    AYAELHCLSNFSFQRGASSAAELFQRAKALGYQALAITDECTLAGIVRAWQASRDTGLKL 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G ++ ++                  P +VLLV    GYQ L  L++R     + K S 
Sbjct: 63   IVGSEMQVE----------------DGPRLVLLVEDLAGYQGLCRLITRARRRAE-KGSY 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+      E     L +   G+  P+           A+ R L  +++F  RL++ L+ H
Sbjct: 106  RLLREDFAEPLPGLLALWLTGAGEPL-----------AQGRWL--QQVFPQRLWLALELH 152

Query: 190  RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPR 247
             G D  R   Q + LA    LP VA  +            D + A+ H   V++   R  
Sbjct: 153  CGQDDARHLQQQLALARQLGLPAVACGDVHMHVRGRRALQDTMTAIRHHLPVAEAGQRLF 212

Query: 248  VTPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L+    +  ++   P+AL + ++ IA RC+F L       PR +  E  D    
Sbjct: 213  ANGERHLRPVEVLQGLY---PQALLDESLAIAGRCAFDLGQLRYQYPRELVPEGHDAG-- 267

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     G+  R   GA A      +  +++D EL +I  + +  YFL V D + +
Sbjct: 268  --SWLRVLTQRGIVRRWPTGARA------EVLKQIDKELTLICDLGYESYFLTVHDIVDF 319

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++ +I +  GRGS A SV  +AL IT+IDP R +LLFERFL+ +R   PD D+DF  +R
Sbjct: 320  ARRQHI-LCQGRGSAANSVVCFALGITEIDPDRSTLLFERFLSRERNEPPDIDVDFEHER 378

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++Y+  +YG  R A      +     A+RDV +AL +P  QV+ L     +    P
Sbjct: 379  REEVLQYLFQRYGRHRAALTAVVSTYHGAGAVRDVAKALGLPPDQVNALADCCGHWSDTP 438

Query: 487  VSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             S++      R +EA      P + R+L ++ +L G  RH S H  G VI ++PL  LVP
Sbjct: 439  PSVE------RLQEAGFDPQSPVLRRVLSLTGQLIGFPRHLSQHPGGFVISEQPLDHLVP 492

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPF 603
            +     ++  V Q++   ++  GL+K D L L  L+ +++  D +   RG +  L+ IP 
Sbjct: 493  VENATMAERTVIQWDKDDLDMVGLLKVDILALGMLSAIRRCFDLIHGYRGQRYSLASIPP 552

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V  Y
Sbjct: 553  EDPATYEMIGRADTIGVFQIESRAQMSMLPRLKPQNFYDLVIEVAIVRPGPIQGGMVHPY 612

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R+N +E      P ++ +LK T GV ++QEQVMQIA + + Y+  EAD LRR+M   K
Sbjct: 613  LRRRNRQEPETYPSPELEGVLKRTLGVPLFQEQVMQIAIVAADYTPGEADQLRRSMAAWK 672

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                ++  +ER   G ++NG S   A  IFE +  F  YGF +SHAA++A+++Y + W+K
Sbjct: 673  RHGGLEPHRERLRRGMNRNGYSDEFATQIFEQIKGFGSYGFPESHAASFALLTYASCWLK 732

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---------- 830
             H P  F  A +           +  QDAR+  +Q++   V     D  +          
Sbjct: 733  CHEPAAFACALINSWPMGFYSPDQILQDARRHGLQVLAVDVGASDWDCSLEPIPVQPARA 792

Query: 831  -----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                 G   +   L  IKG     AR I  A   + F  + D   R    +L+ R  E L
Sbjct: 793  GNGPPGQPALRLGLRMIKGFREDDARRIERARRQRAFVDIADLGERA---RLDVRAQELL 849

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGA           LQ+L   +  A+W E     +   +FA         + L + SV
Sbjct: 850  ADAGA-----------LQALAGDRYRARW-EVAGVERQLGLFAGLPSQEEAPVALPRPSV 897

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                   + +   LG     HPL + +P L     +   + +A   G ++ +A +V  +Q
Sbjct: 898  GED---LQADYHSLGTTLGPHPLALLRPQLAARRCRSSRDLLAVEHGRSVSVAGLVTGRQ 954

Query: 1006 QKKTRKGSRIGWVTF 1020
            +  T  G     VTF
Sbjct: 955  RPGTASG-----VTF 964


>gi|209547187|ref|YP_002279105.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv.
            trifolii WSM2304]
 gi|209538431|gb|ACI58365.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM2304]
          Length = 1087

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 294/1028 (28%), Positives = 483/1028 (46%), Gaps = 92/1028 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV + +S L GA S   +          A+ I D N+L   +   + + A G++ +
Sbjct: 3    YAELQVTTHFSFLRGASSAEELFATAKLMGIEALGIVDRNSLAGIVRALEASRATGLRLV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+LD  + D + M       +PT             Y RL    +R+  L +G+    
Sbjct: 63   VGCRLD--LADGMSMLV-----YPT---------DRAAYSRL----TRLLTLGKGRGGKA 102

Query: 131  ICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             C+  L ++    EGLI    G   P D A      +    +L    ++FGDR YV+L  
Sbjct: 103  KCILQLDDVALYAEGLI----GVLVP-DMA-----DETCAVQLRKMAEIFGDRAYVSLCL 152

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK--DR 245
            R R  D+ R  ++  LA  H +  V TN+ LF      +  DV+  +   T +     +R
Sbjct: 153  RRRPNDQLRLHELSNLAVKHRVKTVITNDVLFHEPGRRQLQDVVTCIRTGTTIDDVGFER 212

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R   D +LK   EM  +F   PEAL  T++I  RC F L+    ++ ++ E+       
Sbjct: 213  ER-HADRFLKPPEEMARLFPRYPEALARTMDIVERCRFSLE---ELVYQYPEEALIPGMT 268

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             +E+ L +    G+  R  +G  A   H +   + +  EL +I  MK++ YFL V   ++
Sbjct: 269  AQES-LEHYTWEGVTTRYPEGLPA---HVE---KTIRHELALIETMKYAPYFLTVFSIVR 321

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +
Sbjct: 322  YARAQGI-LCQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHE 380

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+++   YGH++ A   T    +AK A+RDVG+AL +P   ++ L   I      
Sbjct: 381  RREEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALGLPEDLINSLSSGI------ 434

Query: 486  PVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              S      +++ R   L +P   RL   L ++Q+L G  RH   H  G V+    L  L
Sbjct: 435  -WSWSETVGENQVRALGL-NPEDRRLALTLRLAQQLMGAPRHLGQHPGGFVLTHDRLDHL 492

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+      D  V +++   +E   ++K D L L  LT + K+   + + +   + L+ I
Sbjct: 493  VPIEPAAMVDRQVIEWDKDDVEALKMMKVDVLALGMLTCMAKAFALIGEHKHQDLYLATI 552

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY ++    TLG FQ+ES      L  M+P    D++  V++ RPGPI  D + 
Sbjct: 553  PQEDPATYAMIRKADTLGTFQIESRAQMSMLPRMKPKTFYDLVIQVAIVRPGPIQGDMVH 612

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+ GKEK+    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M  
Sbjct: 613  PYLRRREGKEKVEYPTPELEAVLHKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMAT 672

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    + + K++ +SG  K+G S   A   F  L  F  YGF +SHAA++A+I+Y + +
Sbjct: 673  FKFTGGVSRFKDKLVSGMIKSGYSPEFAEKTFGQLEGFGSYGFPESHAASFALIAYASNY 732

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GD 832
            +K H+P  F AA +  +        +   DAR+ ++++ P  +N    D  +      G 
Sbjct: 733  VKCHFPDVFCAALLNSQPMGFYAPAQIVSDARKHDVEVCPICINRSRWDCTLEEVEGTGR 792

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            + +   +  ++G+ T  A  I+ A AD+PF S++D   R          + SLV     D
Sbjct: 793  HAVRLGMRLVRGLATADAARIVAARADEPFASVDDMWRRSGVP------VASLVELAEAD 846

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--------SDKITLEKFS 944
             F       L SL   ++ A W  K   ++   +F                 ++ L + +
Sbjct: 847  AF-------LPSLRLERRDALWAIKALRDEPLPLFTSAAEREARAIAEQQEPEVELRQMT 899

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              ++ V    +   +G     HPL   +  L K  I    +++    G  +  A +V+ +
Sbjct: 900  DGHNVV---EDYSHIGLTLREHPLRFLRADLTKRQIVTCAKAMTARDGQWLMAAGLVLVR 956

Query: 1005 QQKKTRKG 1012
            Q+  + KG
Sbjct: 957  QRPGSAKG 964


>gi|313763361|gb|EFS34725.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL013PA1]
 gi|313829317|gb|EFS67031.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL063PA2]
 gi|314914584|gb|EFS78415.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL005PA4]
 gi|314918982|gb|EFS82813.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL050PA1]
 gi|314920606|gb|EFS84437.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL050PA3]
 gi|314930402|gb|EFS94233.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL067PA1]
 gi|314956070|gb|EFT00466.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL027PA1]
 gi|314957586|gb|EFT01689.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL002PA1]
 gi|314968599|gb|EFT12697.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL037PA1]
 gi|315098067|gb|EFT70043.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL059PA2]
 gi|315100767|gb|EFT72743.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL046PA1]
 gi|315109377|gb|EFT81353.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL030PA2]
 gi|327452428|gb|EGE99082.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL087PA3]
 gi|327452443|gb|EGE99097.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL083PA2]
 gi|328754927|gb|EGF68543.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL087PA1]
 gi|328759021|gb|EGF72637.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL025PA2]
          Length = 1031

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 278/919 (30%), Positives = 434/919 (47%), Gaps = 107/919 (11%)

Query: 58  FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++
Sbjct: 1   MAEAAEACGLSTIIGSELSIGVPEP-----QNGVVDPMGSHLLVLANGPEGYRRLAEALT 55

Query: 118 RMYLLDQGKQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
             YL++ G++   +  L  L E+      +LTG   G + +       Q AE  L     
Sbjct: 56  DAYLVEGGRKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVRGMLQ-AEAELRRLVD 114

Query: 177 LFG-DRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
           LFG D + V L  HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV
Sbjct: 115 LFGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAV 174

Query: 235 AHSTVVSQKDR---PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
                + + D    P   P   L++ +EM  +FS   +A++NTV +A R +F L+    +
Sbjct: 175 RARRSLDEMDGWLPP--GPVARLRSGAEMADLFSRHRDAVDNTVSVAERTAFHLK---SV 229

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            PR  +++  D      + LR+    G      +  +AK         RL  ELN+I   
Sbjct: 230 RPRLPDQKVPD-GHTPISWLRHLVEEGRRACYGEDPVAK--------DRLATELNLIENR 280

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            F+GYFLIV+D +++A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  
Sbjct: 281 GFAGYFLIVSDIVEFAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVL 339

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R   PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q
Sbjct: 340 REEEPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQ 399

Query: 472 VD--------RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            D        R    +P+DP        I DD               +  ++Q++ GL R
Sbjct: 400 QDAWSRQMERRSVPPLPHDP----DGSEIPDD---------------VTTLAQQVMGLPR 440

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
           H   H+AG+V+   P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L 
Sbjct: 441 HLGIHSAGMVLTREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALS 500

Query: 584 KSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            S D ++Q  G    L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D
Sbjct: 501 ISFDLISQHCGRFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYD 560

Query: 643 IIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
           +   + L RPGP+    V  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A 
Sbjct: 561 LAVEIGLIRPGPVQGGAVHPYIRRRTGAEPVTYPHPLLEPVLERTLGIPLFQEQLMQMAT 620

Query: 701 LLSGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            +   + ++AD+LRRAMG K + E +D    +   G + NGI    A  I+  +  FA++
Sbjct: 621 TVGNCTAADADLLRRAMGSKRRVERIDSLCTKLFEGMAANGIDDDTAQGIYARIESFANF 680

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           GF +SHA ++A + Y +AW+K HYP  FLAA +  +            DAR+  +    P
Sbjct: 681 GFAESHALSFAGLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRP 740

Query: 820 SVNTPCV--DFKV--------------------------------------GDNR----- 834
            V    V  D ++                                      GD+R     
Sbjct: 741 DVARSSVGADLELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHF 800

Query: 835 -IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +   L+ + G+   TA  I+E    + F SL+D   RVD   L+   +E+L  AGA D 
Sbjct: 801 AVRLGLSDVSGISIETATRIVEERERESFVSLDDLARRVD---LSGEEVEALALAGAFDD 857

Query: 894 FGYSRMQLLQSLDNIQKYA 912
              SR   L  +  I   A
Sbjct: 858 LVGSRRGALWQIGQINGVA 876


>gi|314981796|gb|EFT25889.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL110PA3]
 gi|315091577|gb|EFT63553.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL110PA4]
          Length = 1031

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 291/1027 (28%), Positives = 466/1027 (45%), Gaps = 128/1027 (12%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
             ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++
Sbjct: 1    MAEAAEACGLSTIIGSELSIGVPEP-----QNGVADPVGSHLLVLANGPEGYRRLAEALT 55

Query: 118  RMYLLDQGKQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
              YL++ G +   +  L  L E+      +LTG   G + +       Q AE  L     
Sbjct: 56   DAYLVEGGHKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVRGMPQ-AEAELRRLVD 114

Query: 177  LFG-DRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            LFG D + V L  HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV
Sbjct: 115  LFGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLSTVATTAAHYAGGEQFELACALSAV 174

Query: 235  AHSTVVSQKDR---PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
                 + + D    P   P   L++ +EM  +FS   +A++NTV +A R +F L+    +
Sbjct: 175  RARRSLDEMDGWLPP--GPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLK---SV 229

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             PR  +++  D      + LR+    G         +AK         RL  EL++I   
Sbjct: 230  RPRLPDQKVPD-GHTPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDR 280

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F+GYFLIV+D  ++A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  
Sbjct: 281  GFAGYFLIVSDIAEFAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVL 339

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q
Sbjct: 340  REEEPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAIRDMAKALGYSQGQ 399

Query: 472  VD--------RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             D        R    +P+DP  P     I DD               +  ++Q++ GL R
Sbjct: 400  QDAWSRQMERRSVPPLPHDPDGP----EIPDD---------------VTTLAQQVMGLPR 440

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
            H   H+AG+V+   P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L 
Sbjct: 441  HLGIHSAGMVLTREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALS 500

Query: 584  KSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             S D ++Q  G    L+ IP ++   Y +L    ++G+FQ+ES      L  ++P C  D
Sbjct: 501  ISFDLISQHCGRFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGVLPRLRPRCFYD 560

Query: 643  IIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            +   + L RPGP+    V  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A 
Sbjct: 561  LAVEIGLIRPGPVQGGAVHPYIRRRTGAEPVTYPHPLLEPVLERTLGIPLFQEQLMQMAT 620

Query: 701  LLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
             +   ++++AD+LRRAMG K+  E ++  + +   G + NGI    A  I+  +  FA++
Sbjct: 621  TVGNCTVADADLLRRAMGSKRGVERINSLRTKLFEGMAANGIDDDTAQGIYARIESFANF 680

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GF +SHA ++A + Y +AW+K HYP  FLAA +  +            DAR+  +    P
Sbjct: 681  GFAESHALSFAGLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRP 740

Query: 820  SVNTPCV--DFKV--------------------------------------GDNR----- 834
             V    V  D ++                                      GD+R     
Sbjct: 741  DVARSSVGADLELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHF 800

Query: 835  -IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +   L+ + G+   TA  I+E    + F SL+D   RVD   L+   +E+L  AGA D 
Sbjct: 801  AVRLGLSDVSGINIETATRIVEERERESFASLDDLARRVD---LSGEEVEALALAGAFDD 857

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               SR   L  +  I             + +     +     +   +E            
Sbjct: 858  LVGSRRGALWQIGQINGVG-------PGQLDVQVVTQPPLLPEPTQMELLG--------- 901

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            ++ R  G   + HP+   +  L + G+   +       G  + +A +V  +Q+  T  G 
Sbjct: 902  DDLRATGISTADHPVRQVRDALNRRGVVRVDRLDGVESGRRVEVAGVVTHRQRPGTAGG- 960

Query: 1014 RIGWVTF 1020
                VTF
Sbjct: 961  ----VTF 963


>gi|154252973|ref|YP_001413797.1| DNA polymerase III subunit alpha [Parvibaculum lavamentivorans DS-1]
 gi|154156923|gb|ABS64140.1| DNA polymerase III, alpha subunit [Parvibaculum lavamentivorans DS-1]
          Length = 1085

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 294/1022 (28%), Positives = 479/1022 (46%), Gaps = 70/1022 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SF  L V +++S L GA     ++    A    AI I D N L   +     A    I
Sbjct: 2    SASFAELAVATNFSFLRGASHAEELVLAAKAQGLSAIGIADRNTLAGIVRAHAAAKEEKI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + ++G +L   +QD  +              ++        Y RL  L++ +      K 
Sbjct: 62   RLLVGARLV--LQDGFE--------------VIAYPQDRAAYGRLTRLLT-LGNRRAPKG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               + +S L E G EG   +      P D  F        E +L    + F D +++ L 
Sbjct: 105  ECFLAMSDLLEHG-EGHCFIAMPPPVP-DEDF--------EAKLRLIAETFPDSIWLGLT 154

Query: 188  RHRGYDRYRESQVVQL-AYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDR 245
                 D  R   V++L A   ++PLVATN+ L+ S +    HDV+  V  H T+     R
Sbjct: 155  PFYRADDVRRHHVLELLARKTQVPLVATNDVLYHSPDRKPLHDVVTCVREHCTLKEAGFR 214

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + ++K+  EM  + + +P+AL  T +I  RCSF L+       R+ E   D+   
Sbjct: 215  LAANAERHVKSPEEMSRLLAHVPKALSATFDIVERCSFSLEEL-----RY-EYPADNFS- 267

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E+E   + +  L    A+   ++G   +  R+ +D EL +I  M ++ YFL V D ++
Sbjct: 268  --EHETPQELLVRLTWEGARDFFSQGVDDK-IRKAIDHELKLIEEMAYAPYFLTVHDIVR 324

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  NI +  GRGS A S   + L IT ++P    LLFERF++ DR   PD D+DF  +
Sbjct: 325  YARSQNI-LCQGRGSAANSTVCFCLGITSVNPSEIDLLFERFISKDRNEPPDIDVDFEHE 383

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG  R     T  S ++++A+RDVG+   +    +  L +      + 
Sbjct: 384  RREEVIQYIYEKYGRHRAGIAATVISYRSRSAIRDVGKVFGLSEDVISALSRSTWGWSSS 443

Query: 486  PVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
             VS +        RE  L DPS  RL   L+++ +L G  RH S H  G VI   PL ++
Sbjct: 444  GVSQKDA------REIGL-DPSDRRLRLALKLAGELIGFPRHLSQHVGGFVITKGPLDEV 496

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLI 601
            VP+      D    +++   ++  G++K D L L  LT ++K+ +F+ +   + + L+ +
Sbjct: 497  VPIQNAAMDDRTFVEWDKDDLDTLGILKIDVLALGMLTCIRKAFEFIEKHYARPMTLAGV 556

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P  D   Y +L     +G+FQ+ES      L  ++P    D++  V++ RPGPI  D + 
Sbjct: 557  PQGDKAVYDMLCEADAIGVFQVESRAQMSMLPRLKPRNFYDLVVEVAIVRPGPIQGDMVH 616

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R++GKE+I     +++ +L+ T GV ++QEQ M+IA + +G++  E+D LRRAM  
Sbjct: 617  PYLRRRSGKEEITYPSSVLEEVLERTYGVPLFQEQAMKIAIVAAGFTPGESDQLRRAMAT 676

Query: 720  KIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
              K   +   +++FI+G  KNG  +  A   F+ +  FADYGF +SHAA++A ++Y +AW
Sbjct: 677  FRKSGTIGMYRDKFIAGMLKNGYKQDFAERCFKQIEGFADYGFPESHAASFARLAYISAW 736

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDN 833
            +K HYP  F AA +  +        +  +DA +  +++ P  VN    D  +     G  
Sbjct: 737  LKYHYPDAFCAALLNSQPMGFYAPAQLVRDASEHGVEVRPVDVNHSDWDCTLEKTTGGKC 796

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +   L  +KGV   T   I E    K FDS+     +     L  RV+E L  A A   
Sbjct: 797  AVRLGLRQVKGVQIATGETI-EGKRGKGFDSIRHLWLKTG---LGPRVIEKLADADAFRS 852

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTF--SDKITLEKFSVENSSV 950
             G+ R + L ++  +  Y    +   T     +FA  E+G     + ++L         V
Sbjct: 853  IGFDRREALWAVRGLGGYGNG-QNGTTPAALPLFATLEEGGLQVEEDVSLPAMPPGEHVV 911

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +  +L      HP+   +P     G     +   T  G  I +A +V+ +Q+  T 
Sbjct: 912  L---DYAMLRLSLKAHPISFLRPRFAACGAISSRQLKETEAGKRISIAGLVLVRQRPGTA 968

Query: 1011 KG 1012
             G
Sbjct: 969  SG 970


>gi|206479930|ref|YP_002235441.1| putative DNA polymerase subunit alpha [Burkholderia cenocepacia
            J2315]
 gi|195945086|emb|CAR57711.1| putative DNA polymerase alpha subunit [Burkholderia cenocepacia
            J2315]
          Length = 1049

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 296/1032 (28%), Positives = 483/1032 (46%), Gaps = 93/1032 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A +A + 
Sbjct: 10   PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKSANMP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    +   D             +  +   L    +GY  L E +S +  +   K S
Sbjct: 70   LIIGSHFQLTAADG-----------SSALAFTALAMNRDGYGNLCEFIS-LGRMRGKKGS 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    +         +        I    F  + Q  + ++  F ++FGDR ++ L  
Sbjct: 118  YRLAPLDVDHPEAPYAHLRGLPDCLAILSPDFPANEQRLDAQVEWFARVFGDRAWIALTL 177

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H R  D      + ++A  H +P+VAT+  L          DVL  +     V++     
Sbjct: 178  HARAMDDIHRGVLERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGRPVTECGY-E 236

Query: 248  VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            + P  + +L++R  + +++     ALE TV +ARRC+F L               DD++ 
Sbjct: 237  LAPNAERHLRSRLRLANLYP--AGALEETVRVARRCTFSL---------------DDLKY 279

Query: 306  EEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            E  +EL           R +   G   R   G         D + +++ EL +IA M + 
Sbjct: 280  EYPDELVPAGTDPATYLREQTYIGARRRFPAGIPV------DVQAQIEHELQLIADMHYE 333

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFL V D +Q+A++  I +  GRGS A S   Y L +T++DP R S+LFERF++ +R S
Sbjct: 334  AYFLTVYDIVQFAREQGI-LCQGRGSAANSAVCYCLGVTEVDPSRQSMLFERFISKERNS 392

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   +R+ V++Y+  KYG +R A      + + ++ALR+ G+AL +  + V+R
Sbjct: 393  PPDIDVDFEHQKREIVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDTAIVER 452

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSV---DRLLEISQKLEGLYRHASTHAAG 531
            + K      +    LQ      RF EA L DP      +    + +L G  RH S H+ G
Sbjct: 453  VAKQHHWFDSRADLLQ------RFAEAGL-DPEAPLNQQWAAFAAQLLGYPRHLSQHSGG 505

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             VI    L++LVP+      D  + Q++   IE  G++K D L L  L++++++LD +++
Sbjct: 506  FVISRGKLTRLVPVENAAMEDRSIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISE 565

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
             RG   +L  IP  D  TY +L    ++G+FQ+ES      L  ++P C  D++  V++ 
Sbjct: 566  KRGETFELQDIPAQDKATYDMLCEGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIV 625

Query: 651  RPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+   +V+    R+ G E +      ++  L  T GV I+QEQVMQ+A L +G+S  
Sbjct: 626  RPGPVQGGMVHPFLRRRQGLEPVTFPSEGMEKALARTLGVPIFQEQVMQVAMLAAGFSAG 685

Query: 709  EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EAD LRRAM   K K  ++   ER +SG  + G  +  A +IF  +  F +YGF +SHAA
Sbjct: 686  EADQLRRAMAAWKRKGGLEPYHERLVSGMLERGYDREFAESIFAQIKGFGEYGFPESHAA 745

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++A++ Y +AW++ H P  FLAA +  +        +  QDAR+  ++++P  VN    D
Sbjct: 746  SFALLVYSSAWLRRHEPAVFLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWD 805

Query: 828  FKVGDN------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
              +  +      R+ +SL  ++G+    A  I  A A +PF  + D   R    +L+R  
Sbjct: 806  SAIEGSTTSAPVRLGFSL--LRGMREDVAGRIELARAARPFVDVADLARRA---QLDRHD 860

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            L+ L  A AL           +SL    + A            ++    +GT  D   + 
Sbjct: 861  LQVLARANAL-----------RSLAGGNRRAALWLAAAAVPDRDLL---RGTERDD-AVP 905

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAM 1000
                 +       + R +GF    HPL + +  L    ++  E+ +AT+R G   R   +
Sbjct: 906  ALPQASEGHEIVTDYRAMGFTLGRHPLALLRDRLALDRLQSAEQ-LATLRSGQLARACGL 964

Query: 1001 VVSKQQKKTRKG 1012
            V  +Q+  T  G
Sbjct: 965  VTVRQRPGTANG 976


>gi|314965837|gb|EFT09936.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL082PA2]
 gi|315094870|gb|EFT66846.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL060PA1]
 gi|315104143|gb|EFT76119.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL050PA2]
 gi|327325029|gb|EGE66837.1| error-prone DNA polymerase [Propionibacterium acnes HL103PA1]
          Length = 1031

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 291/1027 (28%), Positives = 465/1027 (45%), Gaps = 128/1027 (12%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
             ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++
Sbjct: 1    MAEAAEACGLSTIIGSELSIGVPEP-----QNGVADPVGSHLLVLANGPEGYRRLAEALT 55

Query: 118  RMYLLDQGKQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
              YL++ G +   +  L  L E+      +LTG   G + +       Q AE  L     
Sbjct: 56   DAYLVEGGHKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVRGMPQ-AEAELRRLVD 114

Query: 177  LFG-DRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            LFG D + V L  HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV
Sbjct: 115  LFGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLSTVATTAAHYAGGEQFELACALSAV 174

Query: 235  AHSTVVSQKDR---PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
                 + + D    P   P   L++ +EM  +FS   +A++NTV +A R +F L+    +
Sbjct: 175  RARRSLDEMDGWLPP--GPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLK---SV 229

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             PR  +++  D      + LR+    G         +AK         RL  EL++I   
Sbjct: 230  RPRLPDQKVPD-GHTPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDR 280

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F+GYFLIV+D  ++A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  
Sbjct: 281  GFAGYFLIVSDIAEFAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVL 339

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q
Sbjct: 340  REEEPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAIRDMAKALGYSQGQ 399

Query: 472  VD--------RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             D        R    +P+DP  P     I DD               +  ++Q++ GL R
Sbjct: 400  QDAWSRQMERRSVPPLPHDPDGP----EIPDD---------------VTTLAQQVMGLPR 440

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
            H   H+AG+V+   P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L 
Sbjct: 441  HLGIHSAGMVLTREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALS 500

Query: 584  KSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             S D ++Q  G    L+ IP ++   Y +L    ++G+FQ+ES      L  ++P C  D
Sbjct: 501  ISFDLISQHCGRFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGVLPRLRPRCFYD 560

Query: 643  IIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            +   + L RPGP+    V  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A 
Sbjct: 561  LAVEIGLIRPGPVQGGAVHPYIRRRTGAEPVTYPHPLLEPVLERTLGIPLFQEQLMQMAT 620

Query: 701  LLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
             +   + ++AD+LRRAMG K+  E ++  + +   G + NGI    A  I+  +  FA++
Sbjct: 621  TVGNCTAADADLLRRAMGSKRGVERINSLRTKLFEGMAANGIDDDTAQGIYARIESFANF 680

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GF +SHA ++A + Y +AW+K HYP  FLAA +  +            DAR+  +    P
Sbjct: 681  GFAESHALSFAGLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRP 740

Query: 820  SVNTPCV--DFKV--------------------------------------GDNR----- 834
             V    V  D ++                                      GD+R     
Sbjct: 741  DVARSSVGADLELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHF 800

Query: 835  -IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +   L+ + G+   TA  I+E    + F SL+D   RVD   L+   +E+L  AGA D 
Sbjct: 801  AVRLGLSDVSGINIETATRIVEERERESFASLDDLARRVD---LSGEEVEALALAGAFDD 857

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               SR   L  +  I             + +     +     +   +E            
Sbjct: 858  LVGSRRGALWQIGQINGVG-------PGQLDVQVVTQPPLLPEPTQMELLG--------- 901

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            ++ R  G   + HP+   +  L + G+   +       G  + +A +V  +Q+  T  G 
Sbjct: 902  DDLRATGISTADHPVRQVRDALNRRGVVRVDRLDGVESGRRVEVAGVVTHRQRPGTAGG- 960

Query: 1014 RIGWVTF 1020
                VTF
Sbjct: 961  ----VTF 963


>gi|325068677|ref|ZP_08127350.1| DNA polymerase III, alpha subunit [Actinomyces oris K20]
          Length = 1135

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 312/1109 (28%), Positives = 486/1109 (43%), Gaps = 157/1109 (14%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS+YS L+GA   +++          A+A+TD + +   ++ +Q   A G+  I
Sbjct: 7    YAELHAHSAYSFLDGANEPDDLASAAVELGLEALALTDHDGVPGIVKHAQAGRAYGLPTI 66

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ--- 127
             G +L +    +L +                L     GY+RL+  +S+ + LD G +   
Sbjct: 67   HGTELTLADGSHLPV----------------LARNPVGYRRLVSAISQ-HNLDAGHRQEP 109

Query: 128  ---------SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS------QVAEKRLL 172
                     ++R   +   E  +   ++LTG ++GP+ RA            + A+  L 
Sbjct: 110  AHDPTALASALRSDPTDQTEAASGSCLVLTGTANGPLRRALGDPRRPDTWDLKAADACLG 169

Query: 173  TFKKLFG--DR-----------------------LYVNLQRHRG-YDRYRESQVVQLAYT 206
               +LF   DR                       L V L    G  D      + +LA+ 
Sbjct: 170  HLTELFAAPDRGRPFDAGPTTTAHRQVEGDAAIGLAVELTLDGGPTDAALTDALTRLAHD 229

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
            H LPLVAT         D    DVL A    T +            +L+   +M  +   
Sbjct: 230  HRLPLVATGAVRCARPTDARLADVLTATRLVTDLEGARGHLPAIGRWLRGAQDMALLHRR 289

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
             P+A++   E+A   +F L + AP LP        D    E +       + L     QG
Sbjct: 290  RPDAVDLAAELASDLAFDLSLIAPDLP--------DADVPEGH----TPASWLRELTRQG 337

Query: 327  AIAKGYHAQDYRQR---LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
            A  +    Q++ +    L+ EL VI  + F GYFLIV   +++  ++ I +  GRGS A 
Sbjct: 338  ATRRYGTPQEHPRAWEVLNHELEVIESLGFPGYFLIVHAIVEFCTQSGI-LCQGRGSAAN 396

Query: 384  SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            S   YAL IT +D +R  +LFERFL+P R   PD D+D    RR+EVI++V ++YG ER 
Sbjct: 397  SAVCYALGITAVDAVRHQMLFERFLSPGRAGYPDIDLDIEACRREEVIQHVYSRYGRERA 456

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYS-------QVDRLCKLIPNDPAHPVSLQAIADDS 496
            AQ+    S + ++A+RD  RAL  P         Q+DR   + P        L   +D+ 
Sbjct: 457  AQVANVISYRPRSAVRDAARALGHPAGVQDAWAKQMDRWASVRPG------GLTGQSDE- 509

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
                  + +P    +L+I++KL  L RH   H  G+V+  RP++++ P+      D  V 
Sbjct: 510  ------VPEP----VLDIAEKLLRLPRHLGVHPGGMVLCGRPVTEVCPVRWAAMDDRSVL 559

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV------------------DL 598
            Q++     +AGL+KFD LGL  LT L+ +   LAQRG  V                   L
Sbjct: 560  QWDKDDCAEAGLVKFDLLGLGALTALRLAFTTLAQRGQTVPDAVTEGELRTSQSGRPWGL 619

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
              +P +D   Y LLT   T+G+FQ+ES      L  ++P    DI+  V+L RPGPI  D
Sbjct: 620  HTLPEEDPAVYRLLTAADTVGVFQVESRAQMATLPRLRPQEFYDIVVEVALIRPGPIQGD 679

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+ G+E++  +H  + P L +T GV ++QEQ+MQIA   +G+S +EAD LR+A
Sbjct: 680  AVNPYIRRRLGREEVTYLHGSLKPALTKTLGVPLFQEQLMQIAVDAAGFSPAEADSLRQA 739

Query: 717  MG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            MG K+  E MD  +++ I+G    GI    A  I+  L  FA++GF +SHA ++A + Y 
Sbjct: 740  MGAKRSIERMDALRDKLIAGMRSRGIDAPTAETIYSKLRSFAEFGFPESHAFSFAYLVYA 799

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----- 830
            +AW+K   P +F A  +  +       +    DAR+  ++++P  +N   V   V     
Sbjct: 800  SAWLKARKPEDFYAGVLAAQPMGFWSPQSLVADARRHGVRVLPADINRSLVQATVEQRED 859

Query: 831  --------------------------GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFD 863
                                       D  +   LA IKG+G   A+ I+ E  A  P+ 
Sbjct: 860  HQEAGHSDQWEPLRPHPAALSSLDVHDDLAVRLGLAPIKGLGERAAQAIVTERRAHGPYR 919

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
             L D   RV    L+R  LESL  +GALD  G  R Q L +   +               
Sbjct: 920  DLADLARRV---SLSRSRLESLAVSGALDSLGVERRQALWAAGVLSDEHGRRRGASRRGQ 976

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
               +       +         +     R   +  + G    G PL + +PIL   G+   
Sbjct: 977  GAWYQPTLPGTAVGAQAPTLPIMTDRERQAADLSLTGVSTQGSPLKLLRPILADDGVLSA 1036

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             +      G+ +R+A +V  +Q+  T  G
Sbjct: 1037 ADLADQEHGSRVRVAGVVTHRQRPHTASG 1065


>gi|152986891|ref|YP_001350182.1| error-prone DNA polymerase [Pseudomonas aeruginosa PA7]
 gi|167016910|sp|A6VAU7|DNAE2_PSEA7 RecName: Full=Error-prone DNA polymerase
 gi|150962049|gb|ABR84074.1| probable DNA polymerase alpha chain [Pseudomonas aeruginosa PA7]
          Length = 1024

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 303/1028 (29%), Positives = 478/1028 (46%), Gaps = 93/1028 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q A    ++ 
Sbjct: 3    AYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQAAREYRVKL 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR-MYLLDQGKQS 128
            ++G ++ ++         QG       P +VLL     GYQ+L  L++R     D+G  S
Sbjct: 63   LVGSEIRLE---------QG-------PKLVLLAEDLAGYQQLCRLITRGRRRADKG--S 104

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    LQ    +G++ +     G  D A +               + F  RL++ ++ 
Sbjct: 105  YRLLREDLQP-ALDGVLAIWLAEPGDDDDAAWLG-------------ECFPQRLWLGVEL 150

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HRG D   R   ++ LA   +LP VA  +            D + A+ +   VS+     
Sbjct: 151  HRGADDDARLRGLLALAARAQLPAVACGDVHMHCRGRRALQDCMTAIRNHLPVSEAGAHL 210

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                + +L+  + +  I+   PEAL   T+ IA RC F L+      PR +     D   
Sbjct: 211  FANGERHLRPLAALQGIY---PEALLAETLRIAERCRFDLEQLKYQYPRELVPAGHD--- 264

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     G+  R   GA AK       R++++ EL +I+ + +  YFL V D + 
Sbjct: 265  -PASWLRRLTEKGIRRRWPDGASAK------VREQIEKELKLISELGYESYFLTVQDIVG 317

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A++  I +  GRGS A S   +AL IT++DP R +LLFERFL+ +R   PD D+DF  +
Sbjct: 318  FARRQKI-LCQGRGSAANSAVCFALGITELDPERINLLFERFLSRERNEPPDIDVDFEHE 376

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV N+YG +R A      +     A+RDV +AL +P  QVD L          
Sbjct: 377  RREEVIQYVFNRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPDQVDALANCCGRWSDR 436

Query: 486  PVSLQAIADDSRFREARLADPS---VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              S +      R  EA   DP    + R+L ++ +L G  RH S H  G VI ++PL  L
Sbjct: 437  APSAE------RLMEAGF-DPQSAVLRRVLALTGELVGFPRHLSQHPGGFVISEQPLDTL 489

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ--RGVKVDLSL 600
            VP+      +  V Q++   ++  GL+K D L L  L+ L++S D L +   G ++ L+ 
Sbjct: 490  VPVENASMVERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLLHELRGGERLSLAS 549

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            IP +D  TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +
Sbjct: 550  IPSEDPATYAMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIQVAIVRPGPIQGDMV 609

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R+NG+E +      ++ + + T GV ++QEQVM++A + + YS  EAD LRR+M 
Sbjct: 610  HPYLRRRNGEEPVAYPSVELEKVFERTLGVPLFQEQVMELAIVAADYSPGEADELRRSMA 669

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K    ++  +ER   G   NG     A  IFE +  F  YGF +SHAA++A+++Y ++
Sbjct: 670  AWKRHGGLEHHRERLTRGMLANGYEADFAARIFEQIKGFGSYGFPESHAASFALLTYASS 729

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVDFKVGDNR 834
            W+K H P  F  A +           +  QDAR+  IQ  P  V      C    +G  +
Sbjct: 730  WLKRHEPAAFACALINSWPMGFYSPDQLLQDARRHAIQTRPVDVRHSRWDCSLEPIGQEQ 789

Query: 835  --IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              I   L  I+G     AR I +A   + F  + D   R     L+ R LE L  AGAL 
Sbjct: 790  PAIRLGLRMIRGFREEDARRIEQARQAQSFTDVHDLGRRAG---LDTRALELLADAGAL- 845

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                      + L   +  A+W           +FA         I+L    + +     
Sbjct: 846  ----------RGLAGHRHKARWAIAG-VEPQLPLFAEGPRIEEPAISL---PLPSRGEEL 891

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             ++  +LG     HPL + +  L+    +   E V    G  +R+A +VV +Q+ +T  G
Sbjct: 892  LSDYALLGTTLGPHPLKLLRVQLKARRCRASRELVGMEHGRPVRIAGLVVGRQRPQTASG 951

Query: 1013 SRIGWVTF 1020
                 VTF
Sbjct: 952  -----VTF 954


>gi|296270533|ref|YP_003653165.1| DNA polymerase III subunit alpha [Thermobispora bispora DSM 43833]
 gi|296093320|gb|ADG89272.1| DNA polymerase III, alpha subunit [Thermobispora bispora DSM 43833]
          Length = 1155

 Score =  364 bits (935), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 293/1066 (27%), Positives = 498/1066 (46%), Gaps = 80/1066 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL   S+YS   G    + +  + A      +A+TD + L+  ++  +   A GI PI
Sbjct: 4    FTHLHTASAYSFRYGTAFPDALARRAAEHGMDMLALTDRDGLYGVIKHVRACHARGIAPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G    +D+        +G+        IV+L  +  G+  L  LV+  +         R
Sbjct: 64   AG----VDLALGPARPERGRGSGADGERIVVLARSG-GWAALCRLVTAAHRRRGEPYVTR 118

Query: 131  ICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY--VNLQ 187
              ++      G E L+ +  G +  + RA      + A   L  ++    D +    +L 
Sbjct: 119  ETVAEHAAGPGGEPLLTVLLGPASDVGRAVAERRDRQAAALLHAWRSAVPDVVVEVADLY 178

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             HR  D    ++++ LA    +P V +N   +L   D++  +VL A      +  +    
Sbjct: 179  GHR--DANTAARMIGLADATGVPAVLSNTVRYLDAADHQVGNVLDAARKRVPLHPRHIDH 236

Query: 248  VTPDHYLKNRSEMVSIF-----SDLPEA---LENTVEIARRCSF----ILQVHAPILPRF 295
             T   YLK+ +EM  +       D   A   L  T  +A RC      I+ +  P+ PR 
Sbjct: 237  PTAHAYLKDSTEMAWVALRICGGDRDRAGRLLAETRRVAERCVLDPVEIVPLLDPVRPRL 296

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVR-LAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
               E D    +    LR++   GL  R LA+ A A        R+RL  EL++I R   S
Sbjct: 297  HLPEVD---GDPVRRLRHRCEEGLAARGLARSAEA--------RRRLAAELSIIERKGLS 345

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFL VA      +   I     RGSGAG +  Y + I +++PL   LL ERFL+  R  
Sbjct: 346  GYFLAVAGITDMIRSMGIRCAI-RGSGAGCLVNYLIGIGEVNPLDHGLLMERFLSEGRKG 404

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            +PD DID    RR +  R + ++YG  R+A +    + +A++A+RDVG A+ +P  ++D 
Sbjct: 405  LPDIDIDVESARRLDCYRAILDRYGEARMACVSMVETYRARSAIRDVGAAMGLPPHEIDV 464

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            + K  P+  A  +   A++D    R + L D ++  +  I+++L+GL RH + H  G++I
Sbjct: 465  IVKAFPHIRAGQIR-AALSDLPELRGSGLNDRALQTVFRIAERLDGLPRHIAMHPCGVLI 523

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-- 592
            G+  L    P+   +    P++QF+   +E AGL+K D LG++    +Q +L +  +   
Sbjct: 524  GNSGLRDRTPVEPSMLG-FPMSQFDKDDVEDAGLLKLDVLGVR----MQSALAYAVREVE 578

Query: 593  ---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
               G ++DL  +P DD ET+ L+    TLG FQ+ES G R+ +  ++P  + D+I  +SL
Sbjct: 579  RVDGRRIDLDAVPRDDPETFDLICAGRTLGCFQIESPGQRELVGKLEPRTMHDLIVDISL 638

Query: 650  YRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +RPGP+  D +  Y   ++G       H  +   L+ET GV+I+ EQV+++  +++G  L
Sbjct: 639  FRPGPVNSDMVTPYLEARHGFRAPSYPHEDLREALRETHGVVIFHEQVLRVIDIMTGCGL 698

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            SEA+  RRA+     E  ++ +  F+  A K G  +     ++  +  F  +GF K+HAA
Sbjct: 699  SEAERARRAL--DTPEGREEVRAWFVPLARKKGYGEETIERVWRTIDAFGAFGFCKAHAA 756

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN----T 823
            A+A+ +YQ+AW+K H+P  F A  +T E   +   +    +ARQ  +Q++P  VN    T
Sbjct: 757  AFALPTYQSAWLKRHHPAAFFAGVLTHE-PGMYPNRAIIDEARQCGVQVLPLDVNRSGKT 815

Query: 824  PCVDFKVGDNRIYYSLAAI-KGVGT----TTARHIMEASAD-----KPFDSLEDFCSRVD 873
              V+           +AAI +G G     +  + + EA  D     +P+ SL DF  R  
Sbjct: 816  WLVERTGPPAEGRDGIAAIGRGYGVRVPFSAVKGVSEAEVDRMVAGRPYTSLADFWERA- 874

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN---RTNKHENIFAHE 930
              + +R V E +V  G     G+  +  L+  +   +  +   ++   +    E   A  
Sbjct: 875  --RPSRPVAERIVAVG-----GFDSIYGLRPGEPRWRPGRLTRRDLIAQVGALERASAGA 927

Query: 931  KG----TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
             G     F+++IT  +      +   E E  +LG   S H +  ++ +L  +G+   ++ 
Sbjct: 928  TGQLPMGFTERITPGELPEMTEAEAVEAELEILGMDVSRHVIGFHRDLLEAIGVTWAKDL 987

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++   G  + +A   V+ Q    R G RI + T  +     +  FF
Sbjct: 988  LSRRNGAEVVVAGAKVATQTPAVRSGQRIIFTTLDDSTGPIDLTFF 1033


>gi|314923721|gb|EFS87552.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL001PA1]
          Length = 1031

 Score =  364 bits (935), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 291/1027 (28%), Positives = 465/1027 (45%), Gaps = 128/1027 (12%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
             ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++
Sbjct: 1    MAEAAEACGLSTIIGSELSIGVPEP-----QNGVADPVGSHLLVLANGPEGYRRLAEALT 55

Query: 118  RMYLLDQGKQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
              YL++ G +   +  L  L E+      +LTG   G + +       Q AE  L     
Sbjct: 56   DAYLVEGGHKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVRGMPQ-AEAELRRLVD 114

Query: 177  LFG-DRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            LFG D + V L  HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV
Sbjct: 115  LFGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLSTVATTAAHYAGGEQFELACALSAV 174

Query: 235  AHSTVVSQKDR---PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
                 + + D    P   P   L++ +EM  +FS   +A++NTV +A R +F L+    +
Sbjct: 175  RARRSLDEMDGWLPP--GPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLK---SV 229

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             PR  +++  D      + LR+    G         +AK         RL  EL++I   
Sbjct: 230  RPRLPDQKVPD-GHTPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDR 280

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F+GYFLIV+D  ++A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  
Sbjct: 281  GFAGYFLIVSDIAEFAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVL 339

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q
Sbjct: 340  REEEPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAIRDMAKALGYSQGQ 399

Query: 472  VD--------RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             D        R    +P+DP  P     I DD               +  ++Q++ GL R
Sbjct: 400  QDAWSRQMERRSVPPLPHDPDGP----EIPDD---------------VTTLAQQVMGLPR 440

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
            H   H+AG+V+   P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L 
Sbjct: 441  HLGIHSAGMVLTREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALS 500

Query: 584  KSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             S D ++Q  G    L+ IP ++   Y +L    ++G+FQ+ES      L  ++P C  D
Sbjct: 501  ISFDLISQHCGRFWTLASIPRNEPGVYDMLCRGDSVGVFQVESRAQIGVLPRLRPRCFYD 560

Query: 643  IIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            +   + L RPGP+    V  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A 
Sbjct: 561  LAVEIGLIRPGPVQGGAVHPYIRRRTGAEPVTYPHPLLEPVLERTLGIPLFQEQLMQMAT 620

Query: 701  LLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
             +   + ++AD+LRRAMG K+  E ++  + +   G + NGI    A  I+  +  FA++
Sbjct: 621  TVGNCTAADADLLRRAMGSKRGVERINSLRTKLFEGMAANGIDDDTAQGIYARIESFANF 680

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GF +SHA ++A + Y +AW+K HYP  FLAA +  +            DAR+  +    P
Sbjct: 681  GFAESHALSFAGLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRP 740

Query: 820  SVNTPCV--DFKV--------------------------------------GDNR----- 834
             V    V  D ++                                      GD+R     
Sbjct: 741  DVARSSVGADLELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHF 800

Query: 835  -IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +   L+ + G+   TA  I+E    + F SL+D   RVD   L+   +E+L  AGA D 
Sbjct: 801  AVRLGLSDVSGINIETATRIVEERERESFASLDDLARRVD---LSGEEVEALALAGAFDD 857

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               SR   L  +  I             + +     +     +   +E            
Sbjct: 858  LVGSRRGALWQIGQINGVG-------PGQLDVQVVTQPPLLPEPTQMELLG--------- 901

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            ++ R  G   + HP+   +  L + G+   +       G  + +A +V  +Q+  T  G 
Sbjct: 902  DDLRATGISTADHPVRQVRDALNRRGVVRVDRLDGVESGRRVEVAGVVTHRQRPGTAGG- 960

Query: 1014 RIGWVTF 1020
                VTF
Sbjct: 961  ----VTF 963


>gi|255323961|ref|ZP_05365087.1| putative DNA polymerase III, alpha subunit [Corynebacterium
            tuberculostearicum SK141]
 gi|255299141|gb|EET78432.1| putative DNA polymerase III, alpha subunit [Corynebacterium
            tuberculostearicum SK141]
          Length = 1039

 Score =  364 bits (934), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 244/767 (31%), Positives = 370/767 (48%), Gaps = 65/767 (8%)

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +L++  +M  +  D PE +  TV +AR CSF     AP LP F   E        E+E+ 
Sbjct: 259  WLRSGEQMAQLLPDRPELIAETVALARECSFTWDALAPNLPHFPVPEGYTEMSWLEHEVW 318

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             +A      R A+         Q  R+++  EL VI ++ F GYFLIV D + + ++ NI
Sbjct: 319  RRAKDRYASRPAE-------IRQAARKQIRHELGVIKQLGFPGYFLIVCDLVDFCRRENI 371

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             +  GRGS A S   +AL IT+ +P+   LLFERFL+PDR   PD DID    RR+EVI+
Sbjct: 372  -LCQGRGSAANSAVCFALGITNAEPISAQLLFERFLSPDRDGPPDIDIDIESGRREEVIQ 430

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YV   +G +R AQ+    + + K A RD  RAL  P    D   K     P         
Sbjct: 431  YVYRTHGRDRAAQVANVITYRRKGATRDAARALGYPQGSADAWSKGTSEPP--------- 481

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
            AD S   E  L  P                RH   H+ G+V+ DRP++ +VPM      +
Sbjct: 482  ADVSSLAEQFLGQP----------------RHLGIHSGGMVLCDRPIADVVPMEWARMEN 525

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHL 611
              V Q++      AGL+KFD LGL  L  L   +D + A  G +V L  +   + E Y +
Sbjct: 526  RSVLQWDKDDCAAAGLVKFDLLGLGMLEALHHMIDAVRATTGREVHLWELDLAEPEVYDM 585

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L     +G+FQ+ES      L  ++P    D++  V+L RPGPI    V  Y  R++G E
Sbjct: 586  LCRADAVGVFQVESRAQLATLPRLKPRRFFDLVVEVALIRPGPIQGGSVHPYLRRRDGLE 645

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQ 728
            ++   HP+++  L +T G+ ++QEQ+MQIA   +G+S +EAD LRRAMG K+  E+M   
Sbjct: 646  EVTYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFSGAEADDLRRAMGSKRSPEKMAAL 705

Query: 729  KERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            + RF +G  + NGI   +A  ++  +  FA YGF +SH+ ++A + Y +AW K HYP EF
Sbjct: 706  RSRFFAGLRETNGIEGEVAEKLWAKIVAFAAYGFPESHSQSFASLVYFSAWFKYHYPAEF 765

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVG 846
                +  +       +   QDAR+  ++++P S+N +       G   I   L  IKG+G
Sbjct: 766  CVGLLRAQPMGFYSPQSLIQDARRHGVRVLPVSINDSGAQAHATGSAEIRLGLNLIKGLG 825

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
             + A+ +    A  PF S+ D   R D   L+   +E+L  AGAL+C G  R Q L    
Sbjct: 826  ESAAKRV---EAGAPFTSMSDLSRRAD---LSVEQVEALATAGALECLGLDRRQAL---- 875

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSSVRFENEQRVLGFYFSG 965
                   W       + E +        S  +  +  F +  + V         G   + 
Sbjct: 876  -------WQAGVAATEREGMLPGTSALASPHLPGMSAFELMATDV------AATGVTHNQ 922

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             P+++ +  L  +    +   V    G  +R+A ++  +Q+ +T  G
Sbjct: 923  QPMELVRASLADVLPASHLPHVPD--GTRVRIAGIITHRQRPRTASG 967



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 19/132 (14%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F  L   SSYS L+GA     ++ +        +AI D +  +  ++F++ A  AG+  +
Sbjct: 48  FAELHAVSSYSFLDGAAEPEELVARAVELGLEGLAIVDCDGFYGLMKFAEAAAKAGLPAV 107

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L +            + P      + +L  T EGY+RL  L++R  +  +  +  R
Sbjct: 108 YGAELSL-----------AEAP------VTVLARTPEGYRRLSRLIARARM--EAGEKDR 148

Query: 131 ICLSWLQEIGTE 142
           +    L E+  E
Sbjct: 149 VAYPPLDEVARE 160


>gi|227832328|ref|YP_002834035.1| DNA polymerase III, alpha subunit [Corynebacterium aurimucosum ATCC
            700975]
 gi|227453344|gb|ACP32097.1| DNA polymerase III, alpha subunit [Corynebacterium aurimucosum ATCC
            700975]
          Length = 1045

 Score =  364 bits (934), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 250/770 (32%), Positives = 375/770 (48%), Gaps = 65/770 (8%)

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +L++  +M  +  + PE +  TV +   CSF  +  AP LP F   E        E+   
Sbjct: 259  WLRSGEQMARLLPERPELIAETVRVLEECSFTWEALAPNLPDFDVPEGHTEMSWLEHLTF 318

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             +A A    R       K    + + Q + +EL V+ ++ F GYFLIV D + + K+ NI
Sbjct: 319  ERAAARYATR------PKEIRERAWEQ-MRYELGVVKQLGFPGYFLIVCDLVDFCKRENI 371

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             +  GRGS A S   +AL IT+ +P+   LLFERFL+PDR   PD DID    RR+EVI+
Sbjct: 372  -LCQGRGSAANSAVCFALGITNAEPISAGLLFERFLSPDRDGPPDIDIDIESGRREEVIQ 430

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YV  K+G ER AQ+    + + K ALRD  RAL  P    D   K I   PA P  ++++
Sbjct: 431  YVYAKHGRERAAQVANVITYRRKGALRDAARALGYPQGSADAWSKGIA--PA-PSDVESL 487

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
            AD                      +  G  RH   H+ G+V+ DRP++ +VP+      +
Sbjct: 488  AD----------------------QFLGQPRHLGIHSGGMVLCDRPIADVVPVEWARMEN 525

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611
              V Q++      AGL+KFD LGL  L  L   +D + +  G  V+L  +   D E Y +
Sbjct: 526  RSVLQWDKDDCAAAGLVKFDLLGLGMLEALHHMMDLVEESTGRMVNLWELDLADSEVYDM 585

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L     +G+FQ+ES      L  ++P    D++  V+L RPGPI    V  Y  R++GKE
Sbjct: 586  LCRADAVGVFQVESRAQLSTLPRLKPRVFFDLVVEVALIRPGPIQGGSVHPYLRRRDGKE 645

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQ 728
             +   HP+++  L +T G+ ++QEQ+MQIA   +G+S +EAD LRRAMG K+   +M   
Sbjct: 646  PVTYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFSGAEADDLRRAMGSKRSPAKMAAL 705

Query: 729  KERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            K+RF  G  + NGI   +A  ++  +  FA YGF +SH+ ++A + Y +AW K +YP +F
Sbjct: 706  KQRFYEGLEETNGIVGEVADKLWAKIVAFAAYGFPESHSQSFASLVYFSAWFKRYYPAQF 765

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAI 842
                +  +       +   QDAR+  ++++P SVN    + +V     G  RI   L  I
Sbjct: 766  CVGLLRAQPMGFYSPQSLIQDARRHGVEVLPVSVNESGREARVVVGADGQTRIRLGLNLI 825

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KG+G   A  I EA+A  PF  + D   R D   L    +E+L  AGALD FG  R Q L
Sbjct: 826  KGLGDKAADRI-EAAA--PFAGVPDLSRRAD---LTVDHVEALAVAGALDVFGVDRRQAL 879

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
                     A      R      + A E          E  + + +S    + Q+     
Sbjct: 880  WQ-------AGVAATERAGMLPGLSAIEAPFLPGMSAFELMAADVASTGVTHNQQ----- 927

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
                P++  +  L+  GI    +      G  +R+A +V  +Q+ +T  G
Sbjct: 928  ----PMEQVRGELQSRGILAAADLPGVEDGTRVRIAGVVTHRQRPQTAGG 973



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 19/132 (14%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F  L   SSYS L GA     ++ +        IA+ D +  +  ++F++ A   G+  +
Sbjct: 48  FAELHAVSSYSFLRGASEPEELVARAVDLGLWGIALVDRDGFYGLMKFAEAAAKVGLPAV 107

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L +D             P P    + +L  T EGY+RL  L+SR + ++ G++ V 
Sbjct: 108 FGAELSLD-------------PAP----LTVLARTPEGYRRLSRLISRAH-MEAGEKGV- 148

Query: 131 ICLSWLQEIGTE 142
           +    L EIG +
Sbjct: 149 VSYPSLAEIGAQ 160


>gi|262183812|ref|ZP_06043233.1| error-prone DNA polymerase [Corynebacterium aurimucosum ATCC 700975]
          Length = 953

 Score =  364 bits (934), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 250/770 (32%), Positives = 375/770 (48%), Gaps = 65/770 (8%)

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +L++  +M  +  + PE +  TV +   CSF  +  AP LP F   E        E+   
Sbjct: 167  WLRSGEQMARLLPERPELIAETVRVLEECSFTWEALAPNLPDFDVPEGHTEMSWLEHLTF 226

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             +A A    R       K    + + Q + +EL V+ ++ F GYFLIV D + + K+ NI
Sbjct: 227  ERAAARYATR------PKEIRERAWEQ-MRYELGVVKQLGFPGYFLIVCDLVDFCKRENI 279

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             +  GRGS A S   +AL IT+ +P+   LLFERFL+PDR   PD DID    RR+EVI+
Sbjct: 280  -LCQGRGSAANSAVCFALGITNAEPISAGLLFERFLSPDRDGPPDIDIDIESGRREEVIQ 338

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YV  K+G ER AQ+    + + K ALRD  RAL  P    D   K I   PA P  ++++
Sbjct: 339  YVYAKHGRERAAQVANVITYRRKGALRDAARALGYPQGSADAWSKGIA--PA-PSDVESL 395

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
            AD                      +  G  RH   H+ G+V+ DRP++ +VP+      +
Sbjct: 396  AD----------------------QFLGQPRHLGIHSGGMVLCDRPIADVVPVEWARMEN 433

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611
              V Q++      AGL+KFD LGL  L  L   +D + +  G  V+L  +   D E Y +
Sbjct: 434  RSVLQWDKDDCAAAGLVKFDLLGLGMLEALHHMMDLVEESTGRMVNLWELDLADSEVYDM 493

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L     +G+FQ+ES      L  ++P    D++  V+L RPGPI    V  Y  R++GKE
Sbjct: 494  LCRADAVGVFQVESRAQLSTLPRLKPRVFFDLVVEVALIRPGPIQGGSVHPYLRRRDGKE 553

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQ 728
             +   HP+++  L +T G+ ++QEQ+MQIA   +G+S +EAD LRRAMG K+   +M   
Sbjct: 554  PVTYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFSGAEADDLRRAMGSKRSPAKMAAL 613

Query: 729  KERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            K+RF  G  + NGI   +A  ++  +  FA YGF +SH+ ++A + Y +AW K +YP +F
Sbjct: 614  KQRFYEGLEETNGIVGEVADKLWAKIVAFAAYGFPESHSQSFASLVYFSAWFKRYYPAQF 673

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAI 842
                +  +       +   QDAR+  ++++P SVN    + +V     G  RI   L  I
Sbjct: 674  CVGLLRAQPMGFYSPQSLIQDARRHGVEVLPVSVNESGREARVVVGADGQTRIRLGLNLI 733

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KG+G   A  I EA+A  PF  + D   R D   L    +E+L  AGALD FG  R Q L
Sbjct: 734  KGLGDKAADRI-EAAA--PFAGVPDLSRRAD---LTVDHVEALAVAGALDVFGVDRRQAL 787

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
                     A      R      + A E          E  + + +S    + Q+     
Sbjct: 788  WQ-------AGVAATERAGMLPGLSAIEAPFLPGMSAFELMAADVASTGVTHNQQ----- 835

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
                P++  +  L+  GI    +      G  +R+A +V  +Q+ +T  G
Sbjct: 836  ----PMEQVRGELQSRGILAAADLPGVEDGTRVRIAGVVTHRQRPQTAGG 881


>gi|313814758|gb|EFS52472.1| DNA polymerase III, alpha subunit [Propionibacterium acnes
           HL059PA1]
          Length = 1031

 Score =  364 bits (934), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 278/919 (30%), Positives = 433/919 (47%), Gaps = 107/919 (11%)

Query: 58  FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++
Sbjct: 1   MAEAAEACGLSTIIGSELSIGVPEP-----QNGVVDPMGSHLLVLANGPEGYRRLAEALT 55

Query: 118 RMYLLDQGKQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
             YL++ G++   +  L  L E+      +LTG   G + +       Q AE  L     
Sbjct: 56  DAYLVEGGRKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVRGMLQ-AEAELRRLVD 114

Query: 177 LFG-DRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
           LFG D + V L  HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV
Sbjct: 115 LFGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAV 174

Query: 235 AHSTVVSQKDR---PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
                + + D    P   P   L++ +EM  +FS   +A++NTV +A R +F L+    +
Sbjct: 175 RARRSLDEMDGWLPP--GPVARLRSGAEMADLFSRHRDAVDNTVSVAERTAFHLK---SV 229

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            PR  +++  D      + LR+    G      +  +AK         RL  ELN+I   
Sbjct: 230 RPRLPDQKVPD-GHTPISWLRHLVEEGRRACYGEDPVAK--------DRLATELNLIENR 280

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            F+GYFLIV+D +++A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  
Sbjct: 281 GFAGYFLIVSDIVEFAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVL 339

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R   PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q
Sbjct: 340 REEEPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQ 399

Query: 472 VD--------RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            D        R    +P+DP        I DD               +  ++Q++ GL R
Sbjct: 400 QDAWSRQMERRSVPPLPHDP----DGSEIPDD---------------VTTLAQQVMGLPR 440

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
           H   H+AG+V+   P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L 
Sbjct: 441 HLGIHSAGMVLTREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALS 500

Query: 584 KSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            S D ++Q  G    L+ IP ++   Y +L    ++G FQ+ES     AL  ++P C  D
Sbjct: 501 ISFDLISQHCGRFWTLASIPRNEPGVYDMLCRGDSIGAFQVESRAQIGALPRLKPRCFYD 560

Query: 643 IIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
           +   + L RPGP+    V  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A 
Sbjct: 561 LAVEIGLIRPGPVQGGAVHPYIRRRTGAEPVTYPHPLLEPVLERTLGIPLFQEQLMQMAT 620

Query: 701 LLSGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            +   + ++AD+LRRAMG K + E +D    +   G + NGI    A  I+  +  FA++
Sbjct: 621 TVGNCTAADADLLRRAMGSKRRVERIDSLCTKLFEGMAANGIDDDTAQGIYARIESFANF 680

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           GF +SHA ++A + Y +AW+K HYP  FLAA +  +            DAR+  +    P
Sbjct: 681 GFAESHALSFAGLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRP 740

Query: 820 SVNTPCV--DFKV--------------------------------------GDNR----- 834
            V    V  D ++                                      GD+R     
Sbjct: 741 DVARSSVGADLELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHF 800

Query: 835 -IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +   L+ + G+   TA  I+E    + F SL+D   RVD   L+   +E+L  AGA D 
Sbjct: 801 AVRLGLSDVSGISIETATRIVEERERESFVSLDDLARRVD---LSGEEVEALALAGAFDD 857

Query: 894 FGYSRMQLLQSLDNIQKYA 912
              SR   L  +  I   A
Sbjct: 858 LVGSRRGALWQIGQINGVA 876


>gi|269218398|ref|ZP_06162252.1| putative DNA polymerase III dnae2 [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211509|gb|EEZ77849.1| putative DNA polymerase III dnae2 [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 1187

 Score =  364 bits (934), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 274/930 (29%), Positives = 426/930 (45%), Gaps = 104/930 (11%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           E +  +  L VHS+YS L+GA    +++ +    +  A+A+TD       ++ +  A  A
Sbjct: 31  EGAVPYAELHVHSAYSFLDGASLPADLVARACELELQALAVTDHGGFPGVVQLASAARTA 90

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR------- 118
           G+  +IG +L +  +D     +      P    IVLL    EGY+RL   V         
Sbjct: 91  GLPAVIGTELTLLSEDRSAQAD------PPGEHIVLLARDPEGYRRLSRTVGEAMLASGE 144

Query: 119 -------------------MYLLDQGKQSVRICLSWLQEIGTEGL---IMLTG------- 149
                              M L    K  VR  L  L+  G EG    + L G       
Sbjct: 145 KNRARYELEDLAAASGGNWMVLSGCRKGGVRRALEGLEGQGAEGSRGGLPLEGAGSRERA 204

Query: 150 ------GSSG-----------PIDRAFFFNSSQV-----AEKRLLTFKKLFG-DRLYVNL 186
                 GS G           P   AF   S  +     A +++   + LFG   + V L
Sbjct: 205 DCLGIAGSPGIAGGRRNSGFNPGASAFSGPSPALWDVDAAVEQVRRLESLFGKGNVAVEL 264

Query: 187 QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                  DR R   +V+ A    +P +AT N  +    D +  DV  A    T + + D 
Sbjct: 265 TNSGAPLDRERCRALVETANRAGVPYLATGNVHYARPRDRDVADVFAATRARTTLEEIDP 324

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                  +L++  +M+S+  D PEA+     I   C+F L + AP LP F   E      
Sbjct: 325 FLPANGSHLRSGGQMLSLHRDHPEAVAEAARIGAECAFDLALVAPDLPDFPVPE----GH 380

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR----LDFELNVIARMKFSGYFLIVA 361
            E + LR          L +    K Y  +    R    +D EL+VI  + F GYFLIV 
Sbjct: 381 TEASWLRC---------LTRERALKRYGPRSSNPRAWEVIDHELDVIVGLGFPGYFLIVC 431

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           + + + +   I    GRGS A S   +AL IT +D +R  +LFERFL+P R   PD D+D
Sbjct: 432 EIVDFCRSRGIWC-QGRGSSANSAVCFALGITAVDAVRHKMLFERFLSPGRSGPPDIDVD 490

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
              DRR+EVI++V  +YG +  AQ+    S + ++A+RD  +AL     QV+   + +  
Sbjct: 491 IESDRREEVIQHVYERYGRKCAAQVANTISYRPRSAIRDAAKALGYEEGQVEAWLRSV-- 548

Query: 482 DPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              H V  +A +   + +  A         + +++ +++ L RH   H  G+V+ DRP+ 
Sbjct: 549 --EHKVPAKADVGGSAGYEPAGYEADVPAAVADLASRMQRLPRHLGIHTGGMVLCDRPVI 606

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
            + P          V Q++     +AGL+KFD LGL  LT L+KS   L   G+      
Sbjct: 607 DVCPAGWARMPGRTVLQWDKDDCAEAGLVKFDLLGLGMLTALRKSYTQLTDAGIAGSDGK 666

Query: 596 -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            + L  +P +D   Y LL    T+G+FQ+ES      L  ++P+C  DI+  V+L RPGP
Sbjct: 667 PLGLHNLPQEDPRVYALLQAADTVGVFQVESRAQMATLPRLRPECFYDIVIEVALIRPGP 726

Query: 655 I--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           I  D +  Y  R+ G+E +   HPL  P L++T GV ++QEQ+MQIA  ++G++ ++AD 
Sbjct: 727 IQGDAVSPYLARRRGREPVTYPHPLTKPALEKTLGVPLFQEQLMQIAIDVAGFTPAQADR 786

Query: 713 LRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           LR+AMG K+  E M + K    SG +  G+   +   I++ L  FA++GF +SH+ ++A 
Sbjct: 787 LRKAMGAKRSHERMSELKSELYSGMASKGVPPRVREEIYDKLDAFAEFGFPESHSFSFAY 846

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
           + Y +AW+K H+P  F A  +  +       +    DAR+  +      V +PCV   +G
Sbjct: 847 LVYASAWLKVHFPEHFYAGILAAQPMGFYSPQSLVADARRHGVH-----VASPCVVRSLG 901

Query: 832 DNRIYYSLAAIKGVGTTTARHIMEASADKP 861
           +  +    AA + V         E   D+P
Sbjct: 902 EASVRKRGAAERDVAKCGGER-AEMECDEP 930


>gi|84496189|ref|ZP_00995043.1| putative DNA polymerase III alpha subunit [Janibacter sp. HTCC2649]
 gi|84382957|gb|EAP98838.1| putative DNA polymerase III alpha subunit [Janibacter sp. HTCC2649]
          Length = 1282

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 309/1166 (26%), Positives = 505/1166 (43%), Gaps = 165/1166 (14%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL V S YS+  GA +  +++++ A D QPA+A+TD + L+ A+ F+     AGI
Sbjct: 2    NPDFVHLHVASGYSMRFGASTPEDLVERAADDGQPALALTDRDGLYGAVRFAMACGKAGI 61

Query: 68   QPIIGCQLDIDMQD-NLKMTNQGKTPF-------PTVPSIVLL-------VSTAEGYQRL 112
             PI+G  L +  +    +   + +TP          +P + +L            G+  L
Sbjct: 62   APILGVDLAVGAEPVPGRPVRKVRTPVRGGAVVDQRLPRVTVLARGRAAGTGRGLGWAAL 121

Query: 113  IELVSRMYLLDQGKQSVRI---CLSWLQ--------------------------EIGTEG 143
              LV+  +L  +  Q V +      W +                          E+    
Sbjct: 122  CRLVTDTHLRGERGQPVTLPDLLARWCRGGDPSSTTDFVPRTDNSLALAVRAGHEVEEPS 181

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYD-----RYRE 197
             + +  G    + RA        A   L  ++ +   D L + +  + G +     R   
Sbjct: 182  RLRVLLGPDSDVGRALLARRPTEARALLERWRAILPPDALAIEIVGNGGPEGTPGSRVHA 241

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
              ++ LA    +P + T        +     D+L A     V+  +   RVT   +L   
Sbjct: 242  RHLLGLADEARVPAILTAAVRHADRDGVRTVDILDAARRLVVLDSRHLDRVTDAGHLATS 301

Query: 258  SEM----VSIFSDLPEALE---NTVEIARRCSF-------ILQVHAPILPRFIEKECDDI 303
             EM    + +  D   A +    T+ +A  C         I  VH P  P  +  E    
Sbjct: 302  EEMWLRALEVTGDNGRAAQLIGATLALADECVLDARADLGIGAVHLP-EPSILGIEAGVD 360

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              +   E    AV G    L   A            RLD EL VIA + +  YFL VA+ 
Sbjct: 361  PHQVLTERCRAAVNGRFPALGDAA------RHTVLSRLDDELRVIADLGYPTYFLTVAEV 414

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
                K   + V   RGSGAGS+  Y L I+ +DP+R  LL ERF +P R  +PD DID  
Sbjct: 415  TDLIKARGVRVA-ARGSGAGSLVNYLLGISGVDPIRHDLLMERFCSPLRAELPDIDIDVE 473

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR E+   + +++G ERV  +    + + + A+RDVG AL MP  ++D + K  P+  
Sbjct: 474  SARRTEIYEAILDRFGGERVTCVSMMDTYKVRHAVRDVGAALGMPPIEIDEIAKAFPHIR 533

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            A   +  AIAD    R   L  P ++   E+ ++L+GL RH + H  G+V+ +  L    
Sbjct: 534  AKD-ARSAIADLPELRSRGLDAPRLNTFFELVERLDGLPRHIALHPCGVVLSNAGLLDRT 592

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL---S 599
            P+        P++ F+   +E  GL+K D LG++  + +  ++  + +  GV+VDL   +
Sbjct: 593  PVEASWLG-FPMSHFDKDDVETLGLLKLDVLGIRMQSAMAHAVAEVRRVDGVEVDLDDET 651

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DN 657
             +P +D  TY L+ +  TLG FQ+ES G R+ +    P+   D+I  +SL+RPGP+  D 
Sbjct: 652  QVPLEDPATYRLIRSTHTLGCFQIESPGQRELIGKFGPERFGDLIIDISLFRPGPVKSDM 711

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +   ++G  K   +HP + P L ET+GV+++ EQV++I    +G +L++AD +RR M
Sbjct: 712  IRPFLESRHGWSKPQLLHPTLVPALAETEGVVVFHEQVLRIVAETTGVTLAQADEVRRTM 771

Query: 718  GK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            G  K +EE++     +   A   G +      I+ +L  FA +GF K+HAAA+A+ +Y +
Sbjct: 772  GSPKGQEEIEAW---WRPAARARGYAPADVDLIWSVLKSFASFGFCKAHAAAFALPTYHS 828

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------ 830
            AW+KTH+P  FLA  +T +     K +    DAR   I ++   VN     +++      
Sbjct: 829  AWLKTHHPAAFLAGVLTHDPGMYPK-RLILDDARSLGIAVLGLDVNGSGDTYRIERLECG 887

Query: 831  ---------------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                            D  I  SL  +KG+       I+ A   +PF +L DF SR    
Sbjct: 888  GESDFVPVHPDLPDASDYGIRLSLTDVKGISGAEVASIVAA---QPFSNLGDFWSRA--- 941

Query: 876  KLNRRVLESLVFAGALDCF--------------GYSRMQLLQSLDNIQKYAQWVEKNRTN 921
             ++R ++E LV AGA D                  +R  LL  +  + ++    E+  T 
Sbjct: 942  TVSRPIVERLVMAGAFDSMHGIGGSGSGLGRRGRITRRDLLLHVGELDRW----ERASTG 997

Query: 922  KHENIFAHEKGTFSDKI----------TLEKFSVENSSV--------------------- 950
            +            SD++               +  + SV                     
Sbjct: 998  RSSRRRIPPPALASDQVRERAAAQSQAARPVVAAADQSVQLTLDLGDRPELTPGTGLPEM 1057

Query: 951  ----RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                R   E  VLG   S H ++ Y P+L  +G+    + + +   + + +A + V+ Q 
Sbjct: 1058 TGTERVRAELDVLGLDASAHVVEFYGPMLDALGVVRSRDLLRSRSNSEVWVAGVKVATQT 1117

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
               R G R+ ++T  +     +A FF
Sbjct: 1118 PPIRSGRRVVFLTLDDSTGPVDATFF 1143


>gi|163757930|ref|ZP_02165019.1| putative dna polymerase iii alpha chain protein [Hoeflea
            phototrophica DFL-43]
 gi|162285432|gb|EDQ35714.1| putative dna polymerase iii alpha chain protein [Hoeflea
            phototrophica DFL-43]
          Length = 1123

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 282/1045 (26%), Positives = 483/1045 (46%), Gaps = 99/1045 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++V L   S++S L GA     ++ + A      IA+TD N+L   +     A  AG+ 
Sbjct: 4    PAYVELAAASNFSFLRGASHTEELVVQAARLGLGGIALTDRNSLAGVVRGHMAAKEAGLA 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS---RMYLLDQG 125
              +GC+L                     P I++       Y  L EL++   R     + 
Sbjct: 64   FAVGCRLVF---------------MDGTPDILVWPEDRAAYGNLCELLTLGKRRAPKGEC 108

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
              ++  CL+        GL+M     +   DR       +     L   +  F D L++ 
Sbjct: 109  HLTLEDCLAH-----GRGLLMALVPPAAGSDRM------KALPPVLERLRTAFPDHLHLA 157

Query: 186  LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQK 243
            L RH G D  R  + + +LA TH++PLVA  + L+ + E     DVL  +    T+ +  
Sbjct: 158  LTRHHGPDDQRHMAAIARLAQTHDVPLVAIGDVLYHAPERRPLQDVLTCIRERETLATIG 217

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKEC 300
             R +   + +L++ +EM+ +F    +A+    ++  R  F L   +   P  P F     
Sbjct: 218  TRLKPNAERHLRSHAEMLHLFKGYEQAVAQAAKLFARICFSLDELRYQYPDAPLFEALSS 277

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +  +E  E R  A+ GL+ R   G   K   A      +  EL +I ++ ++ YFL V
Sbjct: 278  EPLPAQEALE-RLTAI-GLKKRYPDGTPEKVLKA------IAHELRLIRKLDYAPYFLTV 329

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +++A+  +I +  GRGS A S   Y L IT+++P +  LLFERF++ +R   PD D+
Sbjct: 330  YDIVRFARSQDI-LCQGRGSAANSAVCYCLEITEVNPGKVDLLFERFISEERNEPPDIDV 388

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI+Y+  KYG +R     T  + +A++A+R+VG+   +    +      I 
Sbjct: 389  DFEHERREEVIQYIYEKYGRDRAGLAATVITYRARSAIREVGKVFGLSNDAI----AAIS 444

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                   S +   +D+R      AD  + ++L+++ ++ G  RH S H  G VI    LS
Sbjct: 445  GTKWGGWSREVDPEDARRAGLDPADKHLAQMLDLASQITGFPRHLSQHVGGFVITRDKLS 504

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599
             L+P+      D  + +++   +E  G++K D L L  LT ++K+ DFL    G +  L+
Sbjct: 505  SLIPIENAAMEDRTIVEWDKDDLESLGMLKIDVLALGMLTCIRKAFDFLDTHYGRRETLA 564

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DN 657
             +P  D  TY ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI  D 
Sbjct: 565  SLPDGDRATYDMICRADTIGVFQIESRAQMSMLPRLRPRCYYDLVIEVAIVRPGPIQGDM 624

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +  Y  R+ G+E +    P ++ +L +T GV ++QEQ M IA +  G+S  EAD LRRAM
Sbjct: 625  VHPYLRRRQGREPVSFPKPELEAVLGKTLGVPLFQEQAMNIAIVAGGFSPGEADKLRRAM 684

Query: 718  G--KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
               +++      QK + + G  +NG  +  A + F  +  F +YGF +SHAA++A++ Y 
Sbjct: 685  ATFRRVGTIGSFQK-KMVEGMLRNGYEREFAEHCFRQIEGFGEYGFPESHAASFALLVYV 743

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP-------------PSVN 822
            + W+K HYP  F AA +  +        +  +DAR+  ++I P             P  N
Sbjct: 744  SCWLKCHYPDVFCAAILNSQPMGFYAPAQLIRDAREHGVEIRPVDINFSSWDALLEPDAN 803

Query: 823  TPCVDFKVGD--------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
               V  +  D        + +   L  +KG G   A  +++    + +DS+ D   R   
Sbjct: 804  PQPVSQRHHDMADVMKHSHAVRLGLRQVKGFGKADAAMLVDKRG-RGYDSVRDLWMR--- 859

Query: 875  KKLNRRVLESLVFAGALDCFGYSR------MQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              L+RR +E L  A      G  R      ++ L  L + ++   +   + +N       
Sbjct: 860  SGLSRRAIEQLAEADCFRSIGLERRDAIWAVKALDPLSSAERLPLFAIADTSNLQRE--- 916

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
                     I L    +    +   N+ + L F    HP+   +  L + G + +   +A
Sbjct: 917  -------PDIDLPPMPLGEQVI---NDYQSLSFSLKAHPISFLRANLARSGFR-HNMDLA 965

Query: 989  TIR-GNNIRLAAMVVSKQQKKTRKG 1012
             IR G  +++A +V+ +Q+  + KG
Sbjct: 966  GIRSGVRVKVAGLVLVRQRPGSAKG 990


>gi|182679714|ref|YP_001833860.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635597|gb|ACB96371.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 1090

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 271/881 (30%), Positives = 423/881 (48%), Gaps = 59/881 (6%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +S  +  LQV S +S L GA S   +  + A     A+A+ D ++L   +   Q A A
Sbjct: 1   MNRSARYAELQVTSHFSFLRGASSCEELFAQAALLGIEALAVVDRHSLAGIVRAHQAAKA 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            GI+ IIGC+LD  + D +              S+++  +    Y RL  L+S   L  Q
Sbjct: 61  TGIRLIIGCRLD--LADGM--------------SVLVYPTDRASYARLCRLLS---LGKQ 101

Query: 125 GKQSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                +  L WL  +   EGL+ +               + ++    L      F DR Y
Sbjct: 102 RGGKAQCHLDWLDLVAHGEGLLTILIAE----------KADEICGLHLRRLHDTFKDRAY 151

Query: 184 VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           + L  HR   D+ R  Q+  LA    +P V TN+ LF         DV+  + H   + +
Sbjct: 152 LALTLHRRPNDQLRLHQLAVLAARFRVPTVVTNDILFHEPARRILQDVVTCIRHGCTIDE 211

Query: 243 KD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              R     D YLK   EM  +FS  PEAL  T+EI  RC F L+      P   EK   
Sbjct: 212 AGFRRERHADRYLKPPEEMHRLFSLYPEALARTLEITDRCQFSLEELTYQYPE--EKTMP 269

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +  +E       A+  L ++ A     +G      +  LD EL +IA++ ++ YFL V 
Sbjct: 270 GLTAQE-------ALTRLTLKGAADHYPEGV-PDKVQALLDHELELIAKLNYAPYFLTVN 321

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
             + +AK   I +  GRGS A S   Y L IT I P +  LLFERF++ +R   PD D+D
Sbjct: 322 AIVHFAKTEGI-LCQGRGSAANSAVCYVLGITSIAPDQHDLLFERFVSEERREPPDIDVD 380

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           F  +RR+ VI+++   YG +R A   T    +AK ALRDVG+AL +P   +  L     +
Sbjct: 381 FEHERREIVIQWIYKTYGRDRAALCATVIRYRAKGALRDVGKALGLPEDLLTML-----S 435

Query: 482 DPAHPVSLQAI-ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 S Q +    ++     L DP +   L+++++L G  RH S H  G V+    L 
Sbjct: 436 SQTWVWSKQGLDVKSAKELNLNLDDPRLRLTLDLARELIGTPRHLSQHPGGFVLTHDRLD 495

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
           +LVP+     +D  V +++   IE    +K D L L  L+ +++S + LA+ + + + L+
Sbjct: 496 ELVPIEPAAMTDRQVIEWDKDDIEVLKFMKVDVLALGMLSCMKRSFNLLAEHKKLALALT 555

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DN 657
            IP +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D 
Sbjct: 556 SIPSEDPHTYAMIQRADTIGVFQIESRAQMSMLPRLKPKTFYDLVIEVAIVRPGPIQGDM 615

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           +  Y  R+ GKE        +  +L++T GV ++QEQ M+IA   +G++  EAD LRR+M
Sbjct: 616 VHPYLRRREGKEDPDLPRAELKNVLEKTLGVPLFQEQAMRIAIECAGFTPGEADQLRRSM 675

Query: 718 GK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
              K    ++  K++ ++G   NG     A  IF  L  F  YGF +SHAA++A+++Y +
Sbjct: 676 ATFKHTGTINTFKDKLVNGMVANGYEHAFAERIFHQLEGFGSYGFPESHAASFALLAYAS 735

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVDFKVGDN 833
           +W+K  +P  F AA +  +        +  +DAR   ++I P  VN     C     GD 
Sbjct: 736 SWIKCWHPDVFCAALLNSQPMGFYAPAQIVRDARNHGVEIRPVCVNHSHWDCTLEATGDE 795

Query: 834 R---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
           +   +   +  +K +    A  I+ A AD+PF S+ED   R
Sbjct: 796 KRFALRLGMRMVKRLSNQDAATIVAAKADQPFLSIEDLWHR 836


>gi|239817499|ref|YP_002946409.1| DNA polymerase III, subunit alpha [Variovorax paradoxus S110]
 gi|239804076|gb|ACS21143.1| DNA polymerase III, alpha subunit [Variovorax paradoxus S110]
          Length = 1040

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 263/880 (29%), Positives = 436/880 (49%), Gaps = 57/880 (6%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L+  S++S L GA   + ++++       A+A+TD  +L   +     A    ++
Sbjct: 4   PDYAELRCVSNFSFLRGASQPDELVERAKQLGYAALALTDECSLAGVVRAHVAAKDHDLK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            +IG Q  ++    L   +    PF    ++ +L    +GY  L   ++++    + K +
Sbjct: 64  LLIGSQFLVEPDAEL---DPEAAPF----TLTVLACDLDGYGNLSAFITKLRRSSE-KGT 115

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            ++ L+ ++     G ++L    + P   A     +Q+        ++  G R +  +++
Sbjct: 116 YKLPLAQIRGAELAGCVVL----ASPRRMA---TPAQLGWLGAWLLREFLG-RCWFAVEK 167

Query: 189 HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS---TVVSQKD 244
            R  D      ++ +++   E+PLVA  +  F         DV+ A       T    + 
Sbjct: 168 LRLLDDEMWLHRLGEVSAATEIPLVAAGDVHFHVRSRKPLQDVMTATRLGKPLTDCGLEL 227

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
           +P    + +L+ R  +   ++  PE L  T+++A RCSF L+      P       D++ 
Sbjct: 228 QPNA--ERHLRTRLRLAQTYA--PELLAETLKVAARCSFNLEELRYQYP-------DEVV 276

Query: 305 KEEENE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              E     LR     G   R   G  AK       + +++ EL +IA +K+  YFL VA
Sbjct: 277 PAGETPAGYLRRLTYEGGGRRWPDGIPAK------VQAQIEHELALIAELKYEHYFLTVA 330

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D + +A+  +I +  GRGS A SV  Y   +T++DP R S+LFERF++ +R   PD DID
Sbjct: 331 DIVMFARARHI-LCQGRGSAANSVVCYCTGVTEVDPGRMSVLFERFISKERNEPPDIDID 389

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           F  +RR+EV++Y+  KYG +R A      S + K+A+RDVG+AL M    VD L K    
Sbjct: 390 FEHERREEVLQYLYAKYGRDRAAITGVVISYRPKSAIRDVGKALGMSLETVDALAK---- 445

Query: 482 DPAHPVSLQAIADDSRFREARLADPS--VDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              H           R +E  LA  S  V +LL ++++L G  RH S H  G V+   PL
Sbjct: 446 --GHQWWDGGAVRPERLQELGLAADSLQVQQLLHLTEQLIGFPRHLSQHTGGFVLTKGPL 503

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
            ++VP+      D  V +++   ++  GL+K D L L  LT ++K+LDF+  R G    +
Sbjct: 504 CRMVPIENASMPDRTVIEWDKDDLDALGLLKVDCLALGMLTAIRKALDFIGLRKGCVFGM 563

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             IP +D  TY ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI   
Sbjct: 564 QDIPAEDSATYDMICKADTIGVFQIESRAQMSMLPRLKPRCFYDLVIEVAIVRPGPIQGG 623

Query: 659 VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
           +V  Y NR+ G+E +V     +   L  T GV ++QEQVMQI+ L +G++  EAD LRR+
Sbjct: 624 MVHPYLNRRQGREPVVYPSEALKEALGRTLGVPVFQEQVMQISILAAGFTPGEADGLRRS 683

Query: 717 MGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
           M   K K  ++    + + G +  G  ++ A  IFE +  F++YGF +SHAA++A++ Y 
Sbjct: 684 MAAWKRKGGLEHYHAKIVDGMTARGYEESFAKAIFEQIKGFSEYGFPESHAASFALLVYA 743

Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD--- 832
           + W+K H+P EFLAA +  +        +  QDAR+  +++ P  V    VD  + D   
Sbjct: 744 SCWIKCHHPAEFLAAMLNSQPLGFYSPSQLVQDARRHGVEVRPVDVMYSDVDCTLEDLAH 803

Query: 833 -NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              +   L  I G+ + +A  I+EA   + FDS ED   R
Sbjct: 804 EPAVRLGLRMIGGLKSASAGRIVEARVQQVFDSTEDLALR 843


>gi|319787762|ref|YP_004147237.1| DNA polymerase III subunit alpha [Pseudoxanthomonas suwonensis 11-1]
 gi|317466274|gb|ADV28006.1| DNA polymerase III, alpha subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 1095

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 289/1032 (28%), Positives = 478/1032 (46%), Gaps = 87/1032 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S  ++  + A     A+AITD  +L   +   + + A G++
Sbjct: 52   PAYAELHCLSEFSFLRGASSAEDLFARAAQCGYEALAITDECSLAGIVRAWEASRATGVK 111

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G +  +D    L+               VLLV +  GY RL ELV+     +  K S
Sbjct: 112  LVVGSEFALDC--GLR--------------CVLLVQSRLGYTRLCELVT-TGRRNSAKGS 154

Query: 129  VRICLSWLQEI------GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             R+  + ++ +      G EG +  TG   G              E R L    +FGD  
Sbjct: 155  YRLSRADVERVVRAPPPGEEGGMAGTGEDCGLFALWLPGAEPDPVEGRWLRL--VFGDDA 212

Query: 183  YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVV 240
            Y+ ++ HR  D   R +Q+ +LA   ++  VA  +            D L A+ H+ T+ 
Sbjct: 213  YLAVELHREQDDAARLAQLQELAARLQMTAVAAGDVHMDVRRRRVLQDTLTAIRHNLTIA 272

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI-EKE 299
               DR     + +L+ R  + +I       L+  VE+ARRC+F L+  A    R++  KE
Sbjct: 273  ECADRLFRNGERHLRTRRALAAIHP--APLLQAAVELARRCNFDLRKEA----RYVYPKE 326

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                     + LR     G+  R  +G   +         +++ EL +IA +K+  +FL 
Sbjct: 327  LVPEGHTPSSWLRQLTEEGMRERWPEGVPPR------VAAQIEEELALIAELKYEAFFLT 380

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++A+  +I +  GRGS A S   +AL IT +DP +  LL  RFL+  R   PD D
Sbjct: 381  VEDIVRFARGKDI-LCQGRGSSANSAVCFALGITAVDPAQTRLLVSRFLSRARNEPPDID 439

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EV++YV +KYG  R A   T    + K+A+RDV +A  +P  Q+  L +  
Sbjct: 440  VDFEHERREEVLQYVYSKYGRRRAALAATVIRYRGKSAVRDVAKAFGLPPDQIGLLAECF 499

Query: 480  P-NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
               + A P+         R  EA     +P ++++L ++  LE + RH S H  G VI D
Sbjct: 500  GWGNGAAPMR-------QRLSEAGFDPDNPLINKVLALAAMLEDMPRHLSQHVGGFVISD 552

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK 595
             PLS +VP+     +D  + Q++   +E  G++K D L L  LT ++K+ D +   RGV+
Sbjct: 553  APLSTVVPVENAAMADRTIIQWDKDDLETMGMLKVDCLALGMLTCIRKAFDLVEGYRGVR 612

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D++ +P +D  TY +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 613  LDMATLPREDAATYEMLQAADSVGVFQVESRAQMAMLPRLRPKRFYDLVVQVAIVRPGPI 672

Query: 656  DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               +V  Y  R+ GKE +      +  +L  T G+ ++QEQVM++  + +GYS  EAD L
Sbjct: 673  QGGMVHPYLRRRMGKEPVTYPSEGVREILGNTLGIPLFQEQVMELV-IHAGYSPEEADHL 731

Query: 714  RRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RR+M    +  +M+  + R      +   S      +FE +  F  YGF +SHAA++A +
Sbjct: 732  RRSMAAWGRGGDMEPHRLRIRQLMEEKRYSSEFIDQLFEQIKGFGSYGFPQSHAASFAKL 791

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-----NIQIMPPSVNTP--- 824
             Y +AW+K H P  F  A +  +        +  QDAR+      ++ + P  +      
Sbjct: 792  VYVSAWLKRHEPAAFACALINSQPMGFYSPSQIVQDARRGRGDRESVDVRPVDITCSTWD 851

Query: 825  CVDFKVGDNR---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
            C    VG  +   I   L  + G+    A+ I++A   + F  + D C R    +L+ + 
Sbjct: 852  CTLEPVGQGKQPAIRLGLRLVAGLSEAAAQAIVDARRWRVFSDVADLCRRA---RLDAKA 908

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
             ++L  AGALD            L   +  A+W       K   +      T  D+  +E
Sbjct: 909  RQALAEAGALD-----------GLAGHRNAARWAVAGIEPKRPLL-----DTSPDETRIE 952

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                         + R  G     HP+ + +  L +  I G  E      G+ + +A +V
Sbjct: 953  -LPAPRLGEELLADYRSTGLSLRAHPMALLRAQLVQRRILGVRELQQRRHGSGVHVAGLV 1011

Query: 1002 VSKQQKKTRKGS 1013
              +Q+  T KG+
Sbjct: 1012 TQRQRPATAKGT 1023


>gi|114320331|ref|YP_742014.1| DNA polymerase III, alpha subunit [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311913|sp|Q0A9G3|DNAE2_ALHEH RecName: Full=Error-prone DNA polymerase
 gi|114226725|gb|ABI56524.1| error-prone DNA polymerase, DnaE-like protein [Alkalilimnicola
            ehrlichii MLHE-1]
          Length = 1025

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 300/1035 (28%), Positives = 478/1035 (46%), Gaps = 109/1035 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S +S L GA     ++ + A     A+A+TD  ++  A+   Q A    +  I
Sbjct: 5    YAELHCLSCFSFLRGASQPAELVQRAAELGYRALALTDACSVAGAVRAHQAAKETDLHLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G ++ I         +QG       P +VLL      +  L  L+S       G+   R
Sbjct: 65   HGSEIRI---------HQG-------PLLVLLAPCRRAWAELCALIS------LGRSQAR 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF--NSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                 L+    EG +        P   A +   ++   AE+    F + FGDR +V +  
Sbjct: 103  KGDYRLEREQLEGTL--------PHCLALWVPDDAPHDAEQGRW-FARHFGDRGHVAVAL 153

Query: 189  HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRP 246
            H G D   R  +++ LA    LP VA    L          D L A+ H  T+ +     
Sbjct: 154  HHGPDDEARLQRLLALADRFRLPAVAAGGVLMHRRGRRALQDTLSALRHRRTLAAMGTAL 213

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-----QVHAPILPRFIEKECD 301
              + + +L++   +  ++   P  L  +V +A +C F L     +  A ++P        
Sbjct: 214  ECSGERHLRSLHSLARLYP--PALLRRSVHLADQCRFSLDKLRYEYPAELVP-------- 263

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               +   + LR   + G      QG   K  H      ++D EL +IA M +  +FL V 
Sbjct: 264  -AGETPASYLRRLTLEGARRHWPQGMPDKVAH------QVDHELALIAEMGYEPFFLTVH 316

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A++  I +  GRGS A S   + L IT +DP R SLLFERF++ +R   PD D+D
Sbjct: 317  DVVAFARRRGI-LCQGRGSSANSAVCFCLGITAVDPARQSLLFERFISKERGEPPDIDVD 375

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EVI+Y+  KYG  R A   T    + ++ALRD GRAL +  + +DRL   I  
Sbjct: 376  FEHERREEVIQYIYRKYGRHRAALAATVIRYRPRSALRDAGRALGLDAATIDRLAGSIQW 435

Query: 482  DPAHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                 V      D  R REA L   DP + R + I+ +L GL RH S H  G VI + P+
Sbjct: 436  WDGKRV------DPERLREAGLNPDDPRLARTVAIAGQLLGLPRHLSQHVGGFVISEGPI 489

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
            S+LVP      +   + Q++   +E  GL+K D L L  L+ ++++ D LA  RG ++ L
Sbjct: 490  SELVPTENAAMAGRTIIQWDKDDLEALGLLKVDVLALGMLSCIRRAFDLLAGFRGRRLTL 549

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
            + +P +D   Y +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D
Sbjct: 550  ADVPAEDPAVYRMISDADTMGVFQIESRAQMAMLPRLRPQTFYDLVIEVAIVRPGPIQGD 609

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+ G E +      +  +L  T GV I+QEQVMQ+A + +G++  EAD LRRA
Sbjct: 610  MVHPYLRRREGLEPVDYPSEAVRGVLARTLGVPIFQEQVMQLAVVAAGFTPGEADALRRA 669

Query: 717  MGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M   K K  +   +++ + G  +NG  +  A  +F  +  F +YGF +SHAA++A++ Y 
Sbjct: 670  MAAWKRKGGLGPFRDKLLKGMRRNGYCEDYAERLFRQIQGFGEYGFPESHAASFALLVYV 729

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV---NTPCVDFKVGD 832
            +AW+K H P  F  A +  +        +  +DA +  ++I P  V   +  C     GD
Sbjct: 730  SAWLKCHEPALFTCALLNSQPMGFYAPAQLLRDAERHGVEIRPVDVRHSDWDCSPEHRGD 789

Query: 833  NR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                +   L  ++G+    A  ++ A   +PF  +++   R     L+RR LE+L  AGA
Sbjct: 790  GEPALRLGLRLVRGLNRRAADRLIAARGRRPFRDVQEMARRA---ALHRRDLETLAHAGA 846

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG--TFSDKITLEKFSVENS 948
            L           + L   ++ A W           +   E G   F D    E     ++
Sbjct: 847  L-----------RGLAGHRRAAWW----------QVLGAEAGLPVFEDLHIEEAAPALDA 885

Query: 949  SVRFEN---EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                E+   +   LGF    HPL + +P LR+  +    +  +T  G  +R A +V+++Q
Sbjct: 886  PAEGEDLVADYTSLGFTLGRHPLALLRPQLRRRRLLTAADLASTGHGRLVRTAGLVINRQ 945

Query: 1006 QKKTRKGSRIGWVTF 1020
                R GS  G VTF
Sbjct: 946  ----RPGS-AGGVTF 955


>gi|254443842|ref|ZP_05057318.1| DNA polymerase III, alpha subunit subfamily, putative
            [Verrucomicrobiae bacterium DG1235]
 gi|198258150|gb|EDY82458.1| DNA polymerase III, alpha subunit subfamily, putative
            [Verrucomicrobiae bacterium DG1235]
          Length = 1088

 Score =  361 bits (926), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 288/1079 (26%), Positives = 481/1079 (44%), Gaps = 141/1079 (13%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+V L   S++S L GA   + + +  A     A+A+ D    + +  F       G++ 
Sbjct: 3    SYVELHGRSAFSFLRGASQPDELAEACADRGVAAMAVCDRGGFYGSARFHAACREMGVKG 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC+L                P     ++ ++V T  GYQ L  +++ M+L    K   
Sbjct: 63   IVGCEL----------------PMVDGSALPVVVKTRAGYQSLCRILTDMHL-SAAKGEG 105

Query: 130  RICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
            R  L+W   +G TEGL+ LTG   G + R +          R+   K LFG   ++V LQ
Sbjct: 106  R--LAWGDLVGRTEGLVALTGDEDGVLRRYWDLGDRDGMRDRVAELKGLFGAGNVFVELQ 163

Query: 188  R--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   RG +R   S +  LA    + +VATN   +         DV   +          R
Sbjct: 164  RRHERGEERL-VSGLRDLAEAEGVSMVATNGVSYARPAGRALMDVFTCL----------R 212

Query: 246  PRVTPD-----------HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
             +V+ D            ++K  +EM  +F D+PEA++NT+ IA +  F L+      P 
Sbjct: 213  EKVSLDGAGALLSRNGQRFVKAPAEMRHLFRDIPEAVDNTLRIAEQVEFGLENLGYEFPS 272

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            +     + +    +  L+    AG   R       KG   +  R++++ EL VIA++ FS
Sbjct: 273  YGVPRGESM----DTFLKKVVWAGARKRF------KGEPNEKTRRQMEHELAVIAKLGFS 322

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV D + + + N I +  GRGS A SV  + L IT +DP+   LLFERFLN +R S
Sbjct: 323  GYFLIVWDLVNFCRDNGI-MAQGRGSAANSVVCFCLEITPVDPVGAGLLFERFLNEERRS 381

Query: 415  MPDFDIDF-CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
             PD DID    +RR+ VI+ V  +YG    A      + + K+A R++G+ L      + 
Sbjct: 382  WPDIDIDLPSGERREMVIQEVYRRYGRHGAAMTANVITYRRKSAAREIGKVLGFDEEVLG 441

Query: 474  RLCKLIP-NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            R   L   ++  H V L   AD           P    L ++ +++ GL RH   H+ G+
Sbjct: 442  RFSSLFGGHNYEHGVEL---ADQLEKSGVTKEHPRARALAKLCEQVLGLPRHLGQHSGGM 498

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI    L  +VP+         V Q++    E  G++K D LGL  + ++Q +++ L  +
Sbjct: 499  VICQGALDTVVPLEPASMPGRSVCQWDKNDCEDLGIVKVDLLGLGMMAVMQDTIETLNTK 558

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            GV ++L+ IP DD  T+ ++    T+G+FQ+ES      L  M+P    D++  V + RP
Sbjct: 559  GVDIELATIPKDDVVTFEMMQRADTVGVFQIESRAQIATLPRMKPKTFYDVVVEVGIIRP 618

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GPI   +V  Y  R+    KI  I P ++ +L+ T GV ++QEQ++++A +++ +S +EA
Sbjct: 619  GPIQGKMVHPYLERREDPSKIEYIDPRLEEVLERTLGVPLFQEQILKVAMVMADFSGAEA 678

Query: 711  DVLRRAMGKKIKEE--MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            + LRRA+      E  M+K   + +    + G+ +T   ++   ++ FA YGF +SHA +
Sbjct: 679  EELRRAVSTFSTNEKRMNKVLGKLVGAMRERGVEETKVEDVVRAVSSFAHYGFPESHAIS 738

Query: 769  YAVISYQTAWMKTHYPVEFL---------------------------------------- 788
            + +++Y + ++K HY  EF                                         
Sbjct: 739  FGLLAYASTYLKCHYAAEFFVGLLNNQPMGFYAPATLIQDAKRMGIRVLPVCVVESRWEC 798

Query: 789  -----------AASMTLEMDNVEKI--KKFCQDARQFNIQIMPPSVNTPCVDFKVGD--N 833
                          M  E+D VE +   K  ++AR+ +  +M    +      + GD   
Sbjct: 799  GAAGAAWEKVEGGGMKDEVDRVEGVMATKRHEEARRGDGDLMATKRHEKARKCEGGDRVG 858

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I   L  +KG+     + ++       F SL+DF  R    + N+  L  L   GAL+C
Sbjct: 859  EIRLGLVMVKGLSRERGKALVAERERGAFRSLKDFRFRT---RFNKEELRMLASIGALNC 915

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            F   R   L  ++ +               +++FA       ++  L    V     R +
Sbjct: 916  FCGDRRSALWEVETLL------------DEDDLFAF----VEEEEALSPLEVMTHLERLQ 959

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             +   +G     HP+   +  L   G++   +   T  G+ +++A  V+ +Q+  T KG
Sbjct: 960  ADYAGVGVTVGKHPMASLRGQL--GGVRRACDLDTTSNGSRVKVAGQVICRQRPGTAKG 1016


>gi|116251876|ref|YP_767714.1| DNA polymerase III subunit [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256524|emb|CAK07609.1| putative DNA polymerase II subunit [Rhizobium leguminosarum bv.
            viciae 3841]
          Length = 1086

 Score =  361 bits (926), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 291/1025 (28%), Positives = 479/1025 (46%), Gaps = 86/1025 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV + +S L GA S   +          A+ I D N+L   +   + + A G++ +
Sbjct: 3    YAELQVTTHFSFLRGASSAEELFATAKRLGIEALGIVDRNSLAGIVRALEASRATGLRLV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+LD  +QD +              SI++  +    Y RL    +R+  L + +    
Sbjct: 63   VGCRLD--LQDGM--------------SILVYPTDRAAYSRL----TRLLTLGKSRGGKA 102

Query: 131  ICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             C+  L ++   +EGLI +                 +    +L    ++FGD  Y++L  
Sbjct: 103  NCILHLDDVALYSEGLIGILLPDL----------PDETCAIQLRKMAEVFGDLAYLSLCL 152

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK--DR 245
            R R  D+ R  ++  LA  H++  V TN+ LF      +  DV+  V + T +     +R
Sbjct: 153  RRRPNDQMRLHEMSNLAVRHKVKTVVTNDVLFHDPSRRQLQDVVTCVRNRTTIDDVGFER 212

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R   D YLK  +EM  +FS  PEAL  T+EI  RC F L+      P    +E     K
Sbjct: 213  ER-HADRYLKPATEMERLFSRFPEALTRTMEIVDRCRFSLEELTYQYP----EEIVVPGK 267

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L       +  R   G  A   H +   + +  EL +I  M+++ YFL V   ++
Sbjct: 268  TAQASLEQYVWECVPNRYPDGLPA---HVE---KTIRHELALIEIMRYAPYFLTVFSIVR 321

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   + L +T IDP    LLFERF++ +R   PD D+DF  +
Sbjct: 322  FARSQGI-LCQGRGSAANSAVCFVLGVTSIDPETNDLLFERFVSQERDEPPDIDVDFEHE 380

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+++   YG  + A   T    + K A+RDVG+AL +P   +  L   +      
Sbjct: 381  RREEVIQWIYETYGRNKAALCATVTRYRTKGAIRDVGKALGLPEDLIKALSSGV------ 434

Query: 486  PVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              +      + + RE  L +P   RL   L+++Q+L G  RH   H  G V+    L  L
Sbjct: 435  -WAWTEEVGEKQVRELNL-NPDDRRLALTLQLAQQLMGAPRHLGQHPGGFVLTHDRLDDL 492

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+      D  V +++   +E    +K D L L  LT + KS  FL Q + V +DL+ I
Sbjct: 493  VPIEPASMVDRQVIEWDKDDVEALKFMKVDVLALGMLTCMAKSFAFLNQEKDVDLDLATI 552

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P ++ +TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D + 
Sbjct: 553  PQEEAKTYAMIRKADTLGTFQIESRAQMSMLPRLKPRTFYDLVIQVAIVRPGPIQGDMVH 612

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+ GKEK+    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M  
Sbjct: 613  PYLRRREGKEKVEYPTPELEAVLHKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMAT 672

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    + + K++ ++G  +NG +   A   F  L  F  YGF +SHAA++A+I+Y +++
Sbjct: 673  FKFTGGVSRFKDKLVNGMVRNGYTSEFAEKTFSQLEGFGSYGFPESHAASFALIAYASSY 732

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVDFKVGD--- 832
            +K H+P  F AA +  +        +  +DAR+  ++I P  VN     C    VGD   
Sbjct: 733  IKCHFPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEIRPVCVNQSRWDCTLEPVGDTDR 792

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            + +   +  ++G+ T  A  I+ A AD+ FDS++D   R            SLV     D
Sbjct: 793  HAVRLGMRMVRGLATADAARIVAARADQAFDSVDDMWRRSGVPA------ASLVELAEAD 846

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
             F         SL   ++ A W  K   ++   +FA      +  I  ++          
Sbjct: 847  AFH-------PSLGLERRDALWAIKALRDEPLPLFAAAAEREAKTIAEQQEPAVELRQMT 899

Query: 953  ENEQRVLGFYFSG-----HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +    VL +  +G     HP+   +  L +  I    E+++   G  +  A +V+ +Q+ 
Sbjct: 900  QGHNVVLDYGHAGLTLREHPVSFLRRELAERRIVTCTEAMSARDGRWLMAAGLVLVRQRP 959

Query: 1008 KTRKG 1012
             + KG
Sbjct: 960  GSAKG 964


>gi|329946827|ref|ZP_08294239.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 170
            str. F0386]
 gi|328526638|gb|EGF53651.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 170
            str. F0386]
          Length = 1265

 Score =  360 bits (925), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 311/1109 (28%), Positives = 486/1109 (43%), Gaps = 152/1109 (13%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS+YS L+GA   +++          A+A+TD N +   ++ +Q   A G+  +
Sbjct: 132  YAELHAHSTYSFLDGANEPDDLASAAIELGLEALALTDHNGVPGIVKHAQAGRAHGLPTV 191

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ--- 127
             G +L +    +L +                L     GY  L+  +S+ + LD G++   
Sbjct: 192  HGTELTLADGSHLPV----------------LARNPAGYHLLVSAISQ-HNLDAGERRDP 234

Query: 128  --SVRICLSWLQEI------GTEG-LIMLTGGSSGPIDRAFFFNSS------QVAEKRLL 172
               +    S L+ +      GT G  ++LTG  +GP+ RA              A+  L 
Sbjct: 235  AHDLPTLASALRAVPTSHTGGTSGTCLILTGTVNGPLRRALGDPHRPGTWDLAAADTCLG 294

Query: 173  TFKKLFG--DR----------------------------LYVNLQRHRG-YDRYRESQVV 201
               +LF   DR                            L V L    G  D      + 
Sbjct: 295  HLAELFAAPDRGRPVGSSATAHTTHVEGGGHVEGDAAVGLAVELTLDGGPTDAALTKILA 354

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +LA+ H LPLVAT         D    DVL A    T +            +L+   +M 
Sbjct: 355  RLAHAHRLPLVATGAVRCARPTDARLADVLTATRLVTDLEGARGHLPAIGRWLRGAQDMA 414

Query: 262  SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
             +    P+A++   ++A   +F L + AP LP        D    E           L  
Sbjct: 415  RLHRRSPDAVDLAADLASDLAFDLSLIAPDLP--------DADVPEGY----TPTTWLRE 462

Query: 322  RLAQGAIAKGYHAQDYRQR---LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
               QGA       Q++ +    L+ EL+VI  + F GYFLIV   +++ +++ I +  GR
Sbjct: 463  LTRQGATRHYGTPQEHPRAWEVLNHELDVIESLGFPGYFLIVHSIVEFCRQSGI-LCQGR 521

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GS A S   YAL IT +D +R  +LFERFL+P+R   PD D+D    RR+EVI++V ++Y
Sbjct: 522  GSAANSAVCYALGITAVDAVRHKMLFERFLSPERGGYPDIDLDIEACRREEVIQHVYSRY 581

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DPAHPVSLQAIADDSR 497
            G +  AQ+    S + ++A+RD  RAL  P    D   K +       P  L   +D+  
Sbjct: 582  GRDCAAQVANVISYRPRSAVRDAARALGHPAGVQDAWAKEMDRWATVRPGGLTGRSDE-- 639

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
                 +  P    +L++++KL  L RH   H  G+V+  RP++++ P+      +  V Q
Sbjct: 640  -----VPAP----VLDVAEKLLRLPRHLGVHPGGMVLCGRPVTEVCPVRWATMDNRSVLQ 690

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV------------------DLS 599
            ++     +AGL+KFD LGL +LT L+ +   LA+RG  V                   L 
Sbjct: 691  WDKDDCAEAGLVKFDLLGLGSLTALRLAFATLAERGQTVPDAVEEGELRTSQTGRPWGLH 750

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DN 657
             +P +D   Y LLT   T+G+FQ+ES      L  ++P    DI+  V+L RPGPI  D 
Sbjct: 751  TLPEEDPAVYRLLTAADTVGVFQVESRAQMATLPRLRPKEFYDIVVEVALIRPGPIQGDA 810

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +  Y  R+  +E++  +H  + P L  T GV ++QEQ+MQIA   +G+S +EAD LR+AM
Sbjct: 811  VNPYIRRRLKREQVTYLHDSLKPALARTLGVPLFQEQLMQIAVDAAGFSPAEADTLRQAM 870

Query: 718  G-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            G K+  E MD    R ++G    GI +  A  I+  L  FA++GF +SHA ++A + Y +
Sbjct: 871  GAKRSIERMDALHGRLVAGMKAQGIDEPTAEKIYSKLRSFAEFGFPESHAFSFAYLVYAS 930

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT------------- 823
            AW+K   P +F A  +  +       +    DAR+  ++++P  VN              
Sbjct: 931  AWLKARKPEDFYAGVLAAQPMGFWSPQSLVADARRHGVRVLPADVNRSLAQATVEQREDR 990

Query: 824  ---------------PCV--DFKVGDN-RIYYSLAAIKGVGTTTARHIM-EASADKPFDS 864
                           P V     V D+  +   LA IKG+G   A+ I+ E  A  P+  
Sbjct: 991  REANRSDQWEPLVPHPAVPSSLDVHDDLAVRLGLAPIKGLGERLAQAIVTERCAHGPYQD 1050

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ-KYAQWVEKNRTNKH 923
            L D   RV    L+R  LE+L  +GALD  G  R + L +   +  ++ Q    +R  + 
Sbjct: 1051 LTDLARRV---SLSRSRLEALAASGALDSLGVERRRALWAAGVLSDEHGQIRGASRREQG 1107

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                    GT    I      +     R   +  + G    G PL   +P L   G+   
Sbjct: 1108 AWFQPTLAGTAVGAIA-PPLPIMTGRERQAADLNLTGVSTQGSPLTSLRPGLAADGVLTA 1166

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             +      GN +R+A +V  +Q+  T  G
Sbjct: 1167 ADLSGQEHGNRVRVAGVVTHRQRPHTASG 1195


>gi|15894506|ref|NP_347855.1| DNA polymerase III Alpha chain (dnaE) [Clostridium acetobutylicum
           ATCC 824]
 gi|15024147|gb|AAK79195.1|AE007635_9 DNA Polymerase III Alpha chain (dnaE) [Clostridium acetobutylicum
           ATCC 824]
 gi|325508637|gb|ADZ20273.1| DNA Polymerase III Alpha chain (dnaE) [Clostridium acetobutylicum
           EA 2018]
          Length = 1112

 Score =  360 bits (925), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 273/940 (29%), Positives = 470/940 (50%), Gaps = 78/940 (8%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           S+  L  H  YSLL+       I+ K       AIAIT+  N+FS + F ++    G++ 
Sbjct: 2   SYAELHCHDCYSLLDAISKPEEIISKAKEYGYSAIAITNHGNMFSMVNFQKEGEKQGVKT 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I+G  ++    DNL++ +       T   ++LL    EG + L EL S  YL    K+  
Sbjct: 62  ILG--IEAYEADNLRIKDD------TRYHLILLAKNNEGLKALYELSSISYLEGFYKKP- 112

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           R+ +  ++    + LI+ +   +G IDR    +    A++ +  +KK+F +  Y+ +Q H
Sbjct: 113 RLDIKEIEPYAKD-LIISSACMAGRIDRLLLADKYNEAKEWIYKYKKVFPN-FYLEMQHH 170

Query: 190 RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              ++   ++ +V+L      P + T++S ++++ED +AH + +       V +     +
Sbjct: 171 DVIEQANLNKLIVRLGKETGTPYIMTSDSHYINKEDQKAHSIFIQTNEKREVGE-----I 225

Query: 249 TPDHYLKNRSEMVSIF------SDLPEALENTVEIARRCSFILQVHAP-ILPRF-IEKEC 300
               YLK+  E+  I        D+  A+ NT +IA+ C+  + +  P  +P   I KE 
Sbjct: 226 YDGCYLKSEKEIKEIMMKQIDKDDIELAISNTEKIAKECNVKIDLSLPNQMPEIPIPKEF 285

Query: 301 DDIQKEEENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +I  +    L NK     ++ +L +  + K      + +R+  E  V+  + +  YF++
Sbjct: 286 KNIN-QYYMYLINKGFKEKKLNKLPKNELKK------HIERIKSEYEVLDYVHYIDYFVM 338

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           +    + AKK NIP+G  RGSG   +T + + +T I+ LR++L F RF +  R S+ D+D
Sbjct: 339 LYMLTKAAKKRNIPLGFSRGSGGNCLTLFDMGVTGINSLRYNLDFSRFASKGRTSLADYD 398

Query: 420 IDFCQDRRDEVI---RYVQNKYG---HERVAQIITFGSLQAKAALRDVGRALQ------- 466
           +D  + RR E+I   + + NKY    H +VA I TF S   K A RD+G+ALQ       
Sbjct: 399 MDMSKRRRKEIIDISKELFNKYEDILHTQVAPICTFNSFSTKVACRDIGKALQVNNTYPD 458

Query: 467 MPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDR-------LLEISQKL 518
           + Y   D + K+IP    +     +AI +D + +    ++  +           +   KL
Sbjct: 459 LTYQVRDIVAKMIPKVTRYDEETGEAIEEDQQLKSIIDSNEKLQTYAKKYPLWFKYIIKL 518

Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM-KWIEKAGLIKFDFLGLK 577
           EGL +    HA+G+VI  +P+    P+  + +   P+ Q  M   ++   L+K DFLGLK
Sbjct: 519 EGLPKSLGCHASGVVISPKPIIDYAPLCLN-KDKQPMIQLEMHNVLDDLHLVKMDFLGLK 577

Query: 578 TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG-TLGIFQLESSGMRQALEGMQ 636
           TL ++  +L         +D++ I  +D + Y  +  KG T+G+FQ+ES+  RQ     Q
Sbjct: 578 TLDVIDDALKLAKLTYDDIDINKINLNDPKVYKNIYKKGNTIGVFQMESAEARQMNIDAQ 637

Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            D IED+IAL +L RP        +   K   E +  IH  +  +L+ T GV++YQEQ +
Sbjct: 638 TDNIEDVIALNALNRPACKAMFPDFVENKQHPENMKLIHEDLRSILQSTYGVLLYQEQSL 697

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER--------------FISGASKNGIS 742
            I +L + +  SE D+ RRA+GKK  E M   +E+              +  G  + G +
Sbjct: 698 SIFRL-ANFPDSEVDLARRAIGKKDMEIMKSLEEKLRDKVVKDEDGHILWHYGLKQRGWA 756

Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                +I++LL K A Y FNK H+ AY ++SY TAW+KT+YP EF+ A +  E+ + EKI
Sbjct: 757 DKQIEDIWKLLLKQATYSFNKGHSTAYGLLSYITAWLKTYYPTEFMTALLNSEIGDYEKI 816

Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            K+  + ++ N++++ P +N     F +  + I + +  IK VG +    I+    ++P+
Sbjct: 817 AKYIIECKKMNVKVIEPDINKSIDFFSISKSSILFGINMIKNVGDSVIPDIIN---NRPY 873

Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            S  DF +R +   + +R   +L+ +GA + F   +  LL
Sbjct: 874 QSFNDFITRCN---IGKRATIALIKSGAFNEFNKDKSTLL 910


>gi|325062696|gb|ADY66386.1| DNA polymerase III alpha subunit [Agrobacterium sp. H13-3]
          Length = 1091

 Score =  360 bits (924), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 296/1039 (28%), Positives = 475/1039 (45%), Gaps = 103/1039 (9%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  LQV + +S L GA S + + ++       A+ I D N+L +     + A   GI
Sbjct: 3    TPRYAELQVTTHFSFLRGASSCDELFEQAKNLGIEALGIVDRNSLAAIPRAYEAADNHGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + +IGC+            +     +P              Y RL  L+S    + + + 
Sbjct: 63   RLVIGCR-------LDLDDDLSVLVYPM---------DRPAYGRLCRLLS----VGKKRG 102

Query: 128  SVRIC-LSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                C L+W   +   EGLI++               +  +   RL   K  F DR Y+ 
Sbjct: 103  GKGKCRLTWDDLVAYGEGLIVVLLADL----------ADDLCALRLRRLKAAFADRAYMA 152

Query: 186  LQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L  R R  D+ R  ++  +A   ++P V TN+ LF   E     DV+  + H+  + +  
Sbjct: 153  LSLRRRPNDQMRLFELSNMAAAADVPTVVTNDVLFHVPERRMLQDVVTCIRHNCTIDEAG 212

Query: 245  -RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R     D Y+K   EM  +F+  PEAL  ++EIA+RC+F L+      P   E+    +
Sbjct: 213  FRRERHADRYMKPPQEMHRLFARYPEALARSLEIAKRCTFSLKELVYQYPE--ERSLPGL 270

Query: 304  QKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++  E L  +A AG   R   G   K   A      L  EL +I R++++ YFL V  
Sbjct: 271  TAQQALEKLVWEAAAG---RYPDGLPEKVEKA------LHHELGLIGRLEYAPYFLTVNA 321

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +Q+A+  NI +  GRGS A SV  Y L IT IDPL+  LLFERF++ +R   PD D+DF
Sbjct: 322  IVQFARGENI-LCQGRGSAANSVVCYVLGITAIDPLKVDLLFERFVSEERREPPDIDVDF 380

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP-------YSQVDRL 475
               RR+EVI++V N YG ++ A        + + ALRDVG+ L +P        SQV R 
Sbjct: 381  EHQRREEVIQWVYNTYGRDKAALCSVVTRYRGRGALRDVGKVLGLPEDLTKLLSSQVWRW 440

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             + +       ++L    +D R + A           E++ +L G  RH S H  G V+ 
Sbjct: 441  SEGVGEKQVQELNLN--MEDRRLKLA----------FELANQLVGTPRHHSQHPGGFVLT 488

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
               L +LVP+      D  + +++   I+    +K D L L  L+ +++  + L +R GV
Sbjct: 489  HDRLDELVPIEPAAMDDRQIIEWDKDDIDIVKFMKMDCLALGMLSCMRRGFNMLEERTGV 548

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            K DL+ +P DD  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGP
Sbjct: 549  KYDLATVPQDDDPTYAMIQKADTLGTFQIESRAQMSMLPRLKPKIFYDLVIQVAIVRPGP 608

Query: 655  I--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            I  D +  Y  R++ KE+       +  +L +T GV ++QEQ M++A   +G+S  +AD 
Sbjct: 609  IQGDMVHPYLRRRDKKEEEHYPKEELRGVLGKTLGVPLFQEQAMRVAIECAGFSPGKADQ 668

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM   K    + K ++  I G    G  +  A  IF+ L  F  YGF +SHAA++A+
Sbjct: 669  LRRAMATFKNVGTISKFRQDMIDGMVDRGYEQEFAERIFKQLEGFGSYGFPESHAASFAL 728

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            I+Y ++W+K H+P  F  A +  +        +  +DAR   +++ P  VN    D  + 
Sbjct: 729  IAYASSWLKCHHPDIFCTALLNSQPMGFYAPAQIVRDARDHGVEVRPVCVNNSRFDCSLE 788

Query: 831  --------GDNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                    G  R  +   L  +KG+    A  I+    D+ F S++D   R         
Sbjct: 789  PTGKKNANGKERYAVRLGLRMVKGLSNDHAAKIVACRQDRDFVSVDDLWRRAG------- 841

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
                 V A AL C   +    L SL   ++ A W  K   ++   +FA   G   +   +
Sbjct: 842  -----VPAAALVCLAEAD-AFLPSLSLSRREALWAIKALRDEPLPLFAAAAG--RENAVV 893

Query: 941  EKFSVENSSVR-------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
            ++ S  + ++R          +   +G     HP+   +  L +  I    E+V    G 
Sbjct: 894  DELSEPSVALRPMTDGGEVVQDYGHVGLTLREHPMSFLRRDLSRRRIVSCAEAVRVRDGT 953

Query: 994  NIRLAAMVVSKQQKKTRKG 1012
             +  A +V+ +Q+  + KG
Sbjct: 954  WLETAGLVLVRQRPGSAKG 972


>gi|32471325|ref|NP_864318.1| DNA polymerase III alpha subunit [Rhodopirellula baltica SH 1]
 gi|71151837|sp|Q7UXK9|DNAE2_RHOBA RecName: Full=Error-prone DNA polymerase
 gi|32443166|emb|CAD71997.1| DNA polymerase III alpha subunit [Rhodopirellula baltica SH 1]
          Length = 1145

 Score =  360 bits (923), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 276/1041 (26%), Positives = 494/1041 (47%), Gaps = 94/1041 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V L   S++S L+GA   + ++ + A      +AITD  ++   +     A   G+Q I
Sbjct: 105  YVELHCRSNFSFLDGASHPDELVQRAAELGYEGLAITDRESIAGVVRGFSPAQELGLQYI 164

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQS 128
            +G ++                  PT  P +VL  +    Y R+  ++S   +  ++G+  
Sbjct: 165  VGTEV-----------------HPTDAPPMVLWPTDRAAYGRMCRMLSTGRMRCEKGR-- 205

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL---TFKKLFGDRLYVN 185
               C    ++I      +L G  +    R+     + V + R      F+ +F DR Y+ 
Sbjct: 206  ---CELSFEDIAEHAQGILAGVIATDESRSIEDQHAHVNDSRQFLRGPFRDVFDDRGYLL 262

Query: 186  LQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
               HRG D   + + +  L+   ++PL+A  +  + S E    HD ++A++    V Q  
Sbjct: 263  ASFHRGVDDAAKATWLRNLSLATDVPLLACGDVRYHSAERMALHDCVVAISQGKSVEQIQ 322

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              R V   H+L++  E+  ++ D+P+A+  T+E+A+RC+F L               D +
Sbjct: 323  SDRLVNSQHHLRSLEEIAELYRDVPDAVARTIEVAQRCTFTL---------------DQL 367

Query: 304  QKEEENELRNKAVAGLE--VRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            + E   EL  + +  +E   RL    A+G    G   +   + L  E+ +I  +++  YF
Sbjct: 368  KYEYPVELAPEGMTPIEHLKRLTWEGARGRWPNGV-PEKVIETLRHEVTLIEDLQYEAYF 426

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D +++A+   I +  GRGS A SV  Y L IT +DP    LLFERF++ +R   PD
Sbjct: 427  LTVWDLVRFARSQEI-LCQGRGSAANSVVCYCLGITSVDPTHTDLLFERFISRERGEAPD 485

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF   RR+EV++Y+  KYG +R          +AK+A+R+VG+AL +    +D + K
Sbjct: 486  IDVDFEHQRREEVLQYLYEKYGRDRAGMTAVVTCYRAKSAIREVGKALAISPDIIDAVAK 545

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVD---RLLEISQKLEGLYRHASTHAAGIVI 534
            L  +   +P   +      R R+A L DP      R L +++ L G  RH S H  G+V+
Sbjct: 546  LAGSYSRNPELPE------RCRDAGL-DPDTPLGRRFLYLTETLIGFPRHLSQHVGGMVM 598

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRG 593
                L +L            V Q+N   ++  G++K D L L  L+ +++  + +     
Sbjct: 599  TAGSLCELCVTENAAMPGRSVIQWNKDDLDDIGILKVDILALGMLSAIRRCFELVKDHHN 658

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             ++ LS IP DD  TY ++    T+G+FQ+ES      L  ++P C  D++  V++ RPG
Sbjct: 659  RELSLSTIPPDDTPTYDMICAADTMGVFQIESRAQMSMLPRLKPRCYYDLVIEVAIVRPG 718

Query: 654  PIDNIVVYNNRKNGKEKIVSIHP--LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PI   +V+      +    + +P   I  +L++T GV I+QEQ M++A + +G++  EAD
Sbjct: 719  PIQGNMVHPFLAARENPAAAKYPNDAIRKVLEKTLGVPIFQEQAMKLAVVAAGFTPGEAD 778

Query: 712  VLRRAMGKKIKEE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRAM    +   +D+ + + + G   NG++   A N+F  +  F +YGF +SHAA++A
Sbjct: 779  QLRRAMAAWRRPGVIDRFRTKLLEGMKANGLNGEFAENVFRQIRGFGEYGFPESHAASFA 838

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV---- 826
            ++ Y + ++K HYP  F AA +  +        +  +DA+Q  +Q++P  +N   +    
Sbjct: 839  LLVYASCYLKRHYPTAFCAALLDSQPMGFYAPAQLIRDAQQHGVQVLPVDINDSNIRSKL 898

Query: 827  --DFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLE 883
              D      ++   L  ++G+ +  A+ I+ A  A+ PF +L D  +R    KL+R  + 
Sbjct: 899  IPDLNRPHPKLRLGLQMVRGLPSAVAQKIIVARDANGPFANLHDLTTRA---KLSRSNIA 955

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQW--VEKNRTNKHENIFAHEKGTFSDKITLE 941
            +            +    L S+   ++ A W  + ++ +     + A  +    D    E
Sbjct: 956  T-----------LADADALASIAQDRRAAVWQSLAQDDSGDSMPLLADLE---PDCSVPE 1001

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            +    + +   +N+    G     HP+  ++  L  +  K   +      G ++R+A +V
Sbjct: 1002 ELVPMSPAEEVKNDYATTGLSLKAHPVSFWRDDLNALRCKRASDLPKLRDGVHVRVAGLV 1061

Query: 1002 VSKQQKKTRKGSRIGWVTFSE 1022
            + +Q+  T KG  I +VT  +
Sbjct: 1062 LMRQRPGTAKG--ITFVTMED 1080


>gi|311739972|ref|ZP_07713806.1| DNA-directed DNA polymerase [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305045|gb|EFQ81114.1| DNA-directed DNA polymerase [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 1039

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 228/656 (34%), Positives = 336/656 (51%), Gaps = 45/656 (6%)

Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
           +L++  +M  +  D PE +  TV +AR CSF     AP LP F   E        E+E+ 
Sbjct: 259 WLRSGEQMAQLLPDRPELIAETVALARECSFTWDALAPNLPHFPVPEEHTEMSWLEHEVW 318

Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            +A      R A+         Q  R+++  EL VI ++ F GYFLIV D + + ++ NI
Sbjct: 319 RRAKDRYASRPAE-------IRQAARKQIRHELGVIKQLGFPGYFLIVCDLVDFCRRENI 371

Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
            +  GRGS A S   +AL IT+ +P+   LLFERFL+PDR   PD DID    RR+EVI+
Sbjct: 372 -LCQGRGSAANSAVCFALGITNAEPISAQLLFERFLSPDRDGPPDIDIDIESGRREEVIQ 430

Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
           YV   +G +R AQ+    + + K A RD  RAL  P    D   K     PA   SL   
Sbjct: 431 YVYRTHGRDRAAQVANVITYRRKGATRDAARALGYPQGSADAWSKGTSEPPADVSSL--- 487

Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                                 +++  G  RH   H+ G+V+ DRP++ +VPM      +
Sbjct: 488 ----------------------AEQFLGQPRHLGIHSGGMVLCDRPIADVVPMEWARMEN 525

Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHL 611
             V Q++      AGL+KFD LGL  L  L   +D + A  G +V L  +   + E Y +
Sbjct: 526 RSVLQWDKDDCAAAGLVKFDLLGLGMLEALHHMIDAVRATTGREVHLWELDLAEPEVYDM 585

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
           L     +G+FQ+ES      L  ++P    D++  V+L RPGPI    V  Y  R++G E
Sbjct: 586 LCRADAVGVFQVESRAQLATLPRLKPRRFFDLVVEVALIRPGPIQGGSVHPYLRRRDGLE 645

Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQ 728
           ++   H +++  L +T G+ ++QEQ+MQIA   +G+S +EAD LRRAMG K+  E+M   
Sbjct: 646 EVAYDHSVLEKSLGKTLGIPLFQEQLMQIAVDAAGFSGAEADDLRRAMGSKRSPEKMAAL 705

Query: 729 KERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
           + RF +G  + NGI   +A  ++  +  FA YGF +SH+ ++A + Y +AW K HYP EF
Sbjct: 706 RSRFFAGLRETNGIEGEVADKLWAKIVAFAAYGFPESHSQSFASLVYFSAWFKYHYPAEF 765

Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVG 846
               +  +       +   QDAR+  ++++P S+N      +  G   I   L  IKG+G
Sbjct: 766 CVGLLRAQPMGFYSPQSLIQDARRHGVRVLPVSINDSGAQTRATGSAEIRLGLNLIKGLG 825

Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            + A  + EA+A  PF S+ D   R D   L    +E+L  AGAL+C G  R Q L
Sbjct: 826 ESAAERV-EAAA--PFTSVSDLSRRAD---LRVEQVEALATAGALECLGLDRRQAL 875



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 17/108 (15%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F  L   SSYS L+GA     ++ +        +AI D +  +  ++F++ A  AG+  +
Sbjct: 48  FAELHAVSSYSFLDGAAEPEELVARAVELGLEGLAIVDRDGFYGLMKFAEAAAKAGLPAV 107

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            G +L +            + P      + +L  T EGY+RL  L++R
Sbjct: 108 YGAELSL-----------AEAP------VTVLARTPEGYRRLSRLIAR 138


>gi|88705720|ref|ZP_01103430.1| DNA polymerase III, alpha subunit [Congregibacter litoralis KT71]
 gi|88700233|gb|EAQ97342.1| DNA polymerase III, alpha subunit [Congregibacter litoralis KT71]
          Length = 1036

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 299/1036 (28%), Positives = 479/1036 (46%), Gaps = 109/1036 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S YS L GA     ++ + AA     IAITD  +L   ++    A   G+  I
Sbjct: 3    YCELHCLSCYSFLRGASRPEELVAQAAAKGYSGIAITDECSLAGVVKAHVAAKEHGLSLI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL---IELVSRMYLLDQGKQ 127
            IG +    + + +++              + L  T   Y  L   I L  R     + + 
Sbjct: 63   IGSEFT--LTEGIRL--------------LALAPTRAAYGELSGLISLARRRSPKGEYEV 106

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            ++R  +  L+      LI+         +R +     Q+A        +L  +R+++ + 
Sbjct: 107  TLRDVIFHLKRC----LIVWLPREDSDANRGY---GRQLA--------RLCRERVWIGVH 151

Query: 188  RHRGYDRYRESQVVQLAYTH-ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
               G D  R  + +Q   TH +LPLVA  +           HDV+ A+ H+  V+   R 
Sbjct: 152  YLLGNDELRRYRALQTLATHLQLPLVACGDVRMHCATRKPLHDVMTALHHNCSVAALGRR 211

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R+     +L++  ++   + +  E L  T+ I RRC F L       P    KE      
Sbjct: 212  RLPNAQQHLRSVKQLERFYPN--ELLTETLNILRRCHFSLDELRYEYP----KEVVPDGH 265

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     G   R   G           R+R++ EL +IA + +  YFL V D ++
Sbjct: 266  NARDYLRELTWQGASQRWPDGTPTA------IRERIEKELALIAELDYEYYFLTVYDIVR 319

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A SV  Y L IT++ P + SLLFERF++ +R   PD D+DF  +
Sbjct: 320  FARGRGI-LCQGRGSAANSVVCYCLLITEVSPEKVSLLFERFISRERDEPPDIDVDFEHE 378

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KY   R A   T  + +A++A+RDVG+AL +    VD L K +      
Sbjct: 379  RREEVIQYIYEKYSRRRAALAATVITYRARSAVRDVGKALGLDPLFVDDLAKSL------ 432

Query: 486  PVSLQAIADDSRFREARLA-----------DPSVDRLL-EISQKLEGLYRHASTHAAGIV 533
                 A  D  R  EAR +           +P++ RL  ++ Q++ G  RH S H  G V
Sbjct: 433  -----AWWDKQRDLEARFSEHGLQTDNDDGEPNIARLFYQLVQEILGFPRHLSQHVGGFV 487

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            I   P+SQLVP+     +D  V Q++   IE  GL+K D L L  L+ ++KSL  + +  
Sbjct: 488  ISRGPISQLVPVENASMADRTVIQWDKDDIEALGLLKVDVLALGMLSAIRKSLALVNRYD 547

Query: 594  VKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             ++  L  IP +D  TY +L    ++G+FQ+ES      L  ++P C  D++  +++ RP
Sbjct: 548  PRIRTLQDIPVEDVATYRMLQKADSIGVFQIESRAQMSMLPRLKPACFYDLVIEIAIVRP 607

Query: 653  GPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GPI  D +  Y  R+ G E I      +  +L+ T GV I+QEQV+++A + +G+S  EA
Sbjct: 608  GPIQGDMVHPYLRRRQGLEDISYPDEAVKSVLERTLGVPIFQEQVIRLAMVAAGFSGGEA 667

Query: 711  DVLRRAM---GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            D LRRA+   G+  K  +   +++   G  + G S+  A  +F+ +  F  YGF +SH+A
Sbjct: 668  DQLRRAITNWGRNSK--LLTFEKKLTEGMLRRGYSEDYARRLFDQIKGFGGYGFPESHSA 725

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++A+++Y ++W+K H+P  F    +  +        +  QDAR+ ++  +PP VN    D
Sbjct: 726  SFALLAYVSSWLKCHHPSAFYVGLLNSQPMGFYSPSQLIQDARRHDVVALPPDVNHSDWD 785

Query: 828  FKVGDNR-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
             ++ D+        I   L  IKG+    AR I  A  D P+  + D   R     LNR+
Sbjct: 786  HQLLDDGQQGTRAPIRLGLRLIKGLSRDAARRISMARRDTPYRQIADLRKRA---ALNRK 842

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF----SD 936
             +E+LV A AL      R Q           A+W +         + AHE  T     SD
Sbjct: 843  DMEALVDADALSSLSGHRHQ-----------ARW-QVMALEPERPLLAHEHYTAGPSPSD 890

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            +I+L + +V  S +    + R  G     HPL + +        K   +      G  +R
Sbjct: 891  EISLPEPAVAESVI---ADYRSTGVTLRAHPLALLRSETPFNQCKCQRDLELMDDGRFVR 947

Query: 997  LAAMVVSKQQKKTRKG 1012
            +A +V  +Q+  T  G
Sbjct: 948  IAGLVTCRQRPGTASG 963


>gi|300789271|ref|YP_003769562.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32]
 gi|299798785|gb|ADJ49160.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32]
          Length = 1109

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 294/1031 (28%), Positives = 457/1031 (44%), Gaps = 86/1031 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L VHS++S L+GA     ++++ A  +  A+ +TD + ++ A+ F+  A   G++  
Sbjct: 65   YAELHVHSNFSFLDGASHPETLVEEAARLELDALVLTDHDGMYGAVRFNDAARELGVRVG 124

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L + +        Q   P P    ++++     GY RL  ++SR  L    K    
Sbjct: 125  FGAELSLGLP-----APQAGAPDPAGSHLLVIARQQTGYHRLCRVISRAQLAGGEKGRPV 179

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L E     +++LTG   G + RA        A   L      FG   + V L  H
Sbjct: 180  YDFDELAEELAGHVVVLTGCRKGAVRRALAERGPAAARAELARLVDRFGRSHVAVELIDH 239

Query: 190  RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R   R   +  +  A   +L  P V + N  +   ED          A     S +D   
Sbjct: 240  R-LPRDDAANDLLAALAKDLRLPTVVSGNVHYARPEDAVV--ADAVAAVRARRSAEDLEG 296

Query: 248  VTPDH---YLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              P     +L++  E    F    P A+     +    +F L + AP LP F      D 
Sbjct: 297  WRPPSGQAFLRSGMEQRRRFERRYPGAVGRAAVLGVEVAFDLNLVAPDLPPFPVPAGHDE 356

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGY-----HAQDYRQRLDFELNVIARMKFSGYFL 358
                             + L +   AK Y     H + Y Q LD EL VI ++ F GYFL
Sbjct: 357  MS-------------FLIELTRQGAAKRYGPRDEHPKAYAQ-LDHELAVIEKLGFPGYFL 402

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D +++ ++  I +  GRGS A S   YAL I   DP++++LLFERFL P+R   PD 
Sbjct: 403  VVWDIVRFCREAGI-LCQGRGSAANSAVCYALEICHADPVKWNLLFERFLAPERDGPPDI 461

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+D    RR+E I+YV  K+G    AQ+    + +A +A+RD  +AL     Q D   KL
Sbjct: 462  DVDIESGRREEAIQYVYEKHGRFHAAQVANVITYRAPSAIRDAAKALGHSPGQQDAYGKL 521

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +        + Q         +A  A P  D +L+++ ++E   RH   H+ G+V+  +P
Sbjct: 522  VDRWGGVAATKQ---------QATGAIP--DDVLDLAARIEDFPRHLGIHSGGMVLSKQP 570

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            +S++VP+      D  V Q++       GL+KFD LGL  L+ L   +D +A+  G  VD
Sbjct: 571  VSEVVPVEWATMKDRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHHMIDLVAEHHGSTVD 630

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  +   D   Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI  
Sbjct: 631  IGKLDLADPAVYDMLCAADAVGVFQVESRAQLATLPRLRPRKFYDLVVEVALIRPGPIQG 690

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              V  Y  R+ G E+    HPL+   L  T GV ++QEQVMQ+A  ++ ++ +EAD LRR
Sbjct: 691  GSVHPYIRRRRGDEEWEHAHPLLAASLDRTLGVPLFQEQVMQMAVDVASFTAAEADQLRR 750

Query: 716  AMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AMG K+   +M     RF +G + NG+ + +A  IFE +  F+ YGF ++H+ ++A++ Y
Sbjct: 751  AMGAKRSSAKMRALMARFFAGCAANGLDRELATRIFEQIHAFSGYGFPEAHSMSFALLVY 810

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---- 830
             +AW K +YP  F A  +  +       +    DAR+  + I  P +N       +    
Sbjct: 811  ASAWFKRYYPAAFCAGLLRAQPMGFYSPQSLVADARRHGVHIREPDINASLAGATLEEDA 870

Query: 831  ---GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
               G   +   LAA++ +G   A  I+ E  A  P+  + D  SRV  KK    V E+L 
Sbjct: 871  GSTGGVALRLGLAAVRHLGDDVADLIVAERDAHGPYTDIGDLTSRVPLKK---NVAEALA 927

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFS 944
             AGA   FG  R Q L           W              H  G     D   L   +
Sbjct: 928  TAGAFSSFGGDRRQDL-----------WAAGAAAATRPG---HLPGLAPGLDAPALPGMT 973

Query: 945  VENSSVRFE---NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                  R E    +    G    GHP++  + +L + G     E + T  G  + +   V
Sbjct: 974  ------RLEVTAADLWATGVSPDGHPVEYLRELLDRRGAITVAELMRTEDGTRVWVGGAV 1027

Query: 1002 VSKQQKKTRKG 1012
              +Q+  T  G
Sbjct: 1028 THRQRPATAGG 1038


>gi|327539745|gb|EGF26350.1| error-prone DNA polymerase [Rhodopirellula baltica WH47]
          Length = 1056

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 276/1041 (26%), Positives = 493/1041 (47%), Gaps = 94/1041 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V L   S++S L+GA   + ++ + A      +AITD  ++   +     A   G+Q I
Sbjct: 16   YVELHCRSNFSFLDGASHPDELVQRAAELGYEGLAITDRESIAGVVRGFSPAQELGLQYI 75

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQS 128
            +G ++                  PT  P +VL  +    Y R+  ++S   +  ++G+  
Sbjct: 76   VGTEV-----------------HPTDAPPMVLWPTDRAAYGRMCRMLSTGRMRCEKGR-- 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL---TFKKLFGDRLYVN 185
               C    ++I      +L G  +    R+     + V + R      F+ +F DR Y+ 
Sbjct: 117  ---CELSFEDIAEHAQGILAGVIATDESRSIEDQHAHVNDSRQFLRGPFRDVFDDRGYLL 173

Query: 186  LQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
               HRG D   + + +  L+   ++PL+A  +  + S E    HD ++A++    V Q  
Sbjct: 174  ASFHRGVDDAAKATWLRNLSLATDVPLLACGDVRYHSAERMALHDCVVAISQGKSVEQIQ 233

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              R V   H+L++  E+  ++ D+P+A+  T E+A+RC+F L               D +
Sbjct: 234  SDRLVNSQHHLRSLEEIAELYRDVPDAVARTTEVAQRCTFTL---------------DQL 278

Query: 304  QKEEENELRNKAVAGLE--VRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            + E   EL  + +  +E   RL    A+G    G   +   + L  E+ +I  +++  YF
Sbjct: 279  KYEYPVELAPEGMTSIEHLKRLTWEGARGRWPNGV-PEKVIETLRHEVTLIEDLQYEAYF 337

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D +++A+   I +  GRGS A SV  Y L IT +DP    LLFERF++ +R   PD
Sbjct: 338  LTVWDLVRFARSQEI-LCQGRGSAANSVVCYCLGITAVDPTHTDLLFERFISRERGEAPD 396

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF   RR+EV++Y+  KYG +R          +AK+A+R+VG+AL +    +D + K
Sbjct: 397  IDVDFEHQRREEVLQYLYEKYGRDRAGMTAVVTCYRAKSAIREVGKALAISPDIIDAVAK 456

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVD---RLLEISQKLEGLYRHASTHAAGIVI 534
            L  +   +P   +      R R+A L DP      R L +++ L G  RH S H  G+V+
Sbjct: 457  LAGSYSRNPELPE------RCRDAGL-DPDTPLGRRFLYLTETLIGFPRHLSQHVGGMVM 509

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRG 593
                L +L            V Q+N   ++  G++K D L L  L+ +++  + +     
Sbjct: 510  TAGSLCELCVTENAAMPGRSVIQWNKDDLDDIGILKVDILALGMLSAIRRCFELVKDHHN 569

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             ++ LS IP DD  TY ++    T+G+FQ+ES      L  ++P C  D++  V++ RPG
Sbjct: 570  RELSLSTIPPDDTPTYDMICAADTMGVFQIESRAQMSMLPRLKPRCYYDLVIEVAIVRPG 629

Query: 654  PIDNIVVYNNRKNGKEKIVSIHP--LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PI   +V+      +    + +P   I  +L++T GV I+QEQ M++A + +G++  EAD
Sbjct: 630  PIQGNMVHPFLAARENPAAAKYPNDAIRKVLEKTLGVPIFQEQAMKLAVVAAGFTPGEAD 689

Query: 712  VLRRAMGKKIKEE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRAM    +   +D+ + + + G   NG++   A N+F  +  F +YGF +SHAA++A
Sbjct: 690  QLRRAMAAWRRPGVIDRFRTKLLEGMKANGLNGEFAENVFRQIRGFGEYGFPESHAASFA 749

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV---- 826
            ++ Y + ++K HYP  F AA +  +        +  +DA+Q  +Q++P  +N   +    
Sbjct: 750  LLVYASCYLKRHYPTAFCAALLDSQPMGFYAPAQLIRDAQQHGVQVLPVDINDSNIRSKL 809

Query: 827  --DFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLE 883
              D      ++   L  ++G+ +  A+ I+ A  A+ PF +L D  +R    KL+R  + 
Sbjct: 810  IPDLNRPHPKLRLGLQMVRGLPSAVAQKIIVARDANGPFANLHDLTTRA---KLSRSNIA 866

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQW--VEKNRTNKHENIFAHEKGTFSDKITLE 941
            +            +    L S+   ++ A W  + ++ +     + A  +    D    E
Sbjct: 867  T-----------LADADALASIAQDRRAAVWQSLAQDDSGDSMPLLADLE---PDCSVPE 912

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            +    + +   +N+    G     HP+  ++  L  +  K   +      G ++R+A +V
Sbjct: 913  ELVPMSPAEEVKNDYATTGLSLKAHPVSFWRDDLNALRCKRASDLPKLRDGVHVRVAGLV 972

Query: 1002 VSKQQKKTRKGSRIGWVTFSE 1022
            + +Q+  T KG  I +VT  +
Sbjct: 973  LMRQRPGTAKG--ITFVTMED 991


>gi|188591403|ref|YP_001796002.1| Error-prone DNA polymerase [Cupriavidus taiwanensis]
 gi|170938798|emb|CAP63795.1| Error-prone DNA polymerase [Cupriavidus taiwanensis LMG 19424]
          Length = 1050

 Score =  358 bits (919), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 303/1046 (28%), Positives = 467/1046 (44%), Gaps = 120/1046 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     + ++ A     A+AITD  +L   +    +A  AG++
Sbjct: 10   PDYAELHCLSNFSFLTGASRPEELAERAAQLGYHALAITDECSLAGIVRAHTEAKKAGMR 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS--RM------Y 120
             ++G         +  + N   +P     S+V L    EGY  L EL++  RM      Y
Sbjct: 70   LVVGA--------SFHLQNADGSP---ALSVVALARNREGYGNLCELITLARMRAAKGSY 118

Query: 121  LLD----QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            +L        ++    L  L +     LI+ T     P DR     ++ V+         
Sbjct: 119  VLTPRDLAAPEAPHQHLKGLPDC----LIIFTPDYGAPADR-LDLQAAWVSAT------- 166

Query: 177  LFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             F  R ++ L   +R  D      V   A  H L +VAT              DVL A+ 
Sbjct: 167  -FAGRAWMGLNLLYRPLDDIHRGTVEAAAARHHLRVVATGCVTMHVRSRKPMLDVLTAIR 225

Query: 236  HSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                V +         + +L++R  + +I+      L   V IA  C F L         
Sbjct: 226  VGRPVPECGYDLAPNAEQHLRSRLRLANIYPH--RYLTEAVHIANLCQFSL--------- 274

Query: 295  FIEKECDDIQKEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                  D+++ E  +E           LR +  AG   R   G           +Q+++ 
Sbjct: 275  ------DELRYEYPDEVVPDGTTPADYLRTETYAGAHRRFPAGIPLA------VQQQIEH 322

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL ++  M +  YFL V+D +++A+ N I +  GRGS A S   Y L IT++DP R +LL
Sbjct: 323  ELALVRDMDYERYFLTVSDIVRFARSNGI-LCQGRGSAANSAICYCLGITEVDPARGNLL 381

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERF++ +R   PD D+DF   RR+EVI+Y+  KYG +R A      + + ++ALRD G+
Sbjct: 382  FERFISKERGEPPDIDVDFEHQRREEVIQYLYRKYGRDRAALAAAVTTYRPRSALRDTGK 441

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK------ 517
            AL +  + VD + K      +H       AD  +    R A+  VD   E+SQ+      
Sbjct: 442  ALGVDPAIVDLVAK------SHHW-FDGKADLLK----RFAESGVDAEAELSQRWAHMAV 490

Query: 518  -LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             L G  RH S H  G V+    LS+LVP+     +D  V Q++   ++  GL+K D L L
Sbjct: 491  SLLGFPRHLSQHTGGFVLARGKLSRLVPIENAAMADRSVIQWDKDDLDALGLLKVDVLAL 550

Query: 577  KTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
              L+ ++++LD +A QRG   +L  IP +DH TY ++    T+G+FQ+ES      L  +
Sbjct: 551  GMLSAVRRALDLVAEQRGEAFELQDIPAEDHATYEMICRADTVGVFQIESRAQMSMLPRL 610

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
            QP    D++  V++ RPGP+   +V  Y  R+ G E +      ++  L  T GV I+QE
Sbjct: 611  QPRTFYDLVIEVAIVRPGPVQGGMVHPYLRRRQGFEPVTYPSAAMEKALSRTLGVPIFQE 670

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            QVMQ+A L +G+S  EAD LRRAM   K K  +DK  +R +SG  + G  +  A +IF  
Sbjct: 671  QVMQVAMLAAGFSAGEADQLRRAMAAWKRKGGIDKYYDRIVSGMLERGYDREFAESIFRQ 730

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  F +YGF +SHAA++A++ Y +AW+K H P  FL A +  +        +  QDA++ 
Sbjct: 731  IQGFGEYGFPESHAASFALLVYASAWLKCHEPEAFLCAMLNSQPMGFYTPSQLVQDAKRH 790

Query: 813  NIQIMPPSVNTPCVD-----FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
             + ++P  V     D     F  G    +   L+ ++G+    A+ I EA A +PF S  
Sbjct: 791  GVTVLPADVAVSGWDSALEPFHAGSRPAVRLGLSLLRGMRREAAQRIEEARAIRPFASTA 850

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            +   R     L+R  L+ L    AL      R Q L      Q  A   +K+     E  
Sbjct: 851  ELARRA---ALDRHDLQVLASGNALASITGGRRQALW-----QAAAAVPDKDMLRATE-- 900

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
             A E          E+            + R +G     HPL + +P+L         E 
Sbjct: 901  LAEESAELVPATEGEEIV---------GDYRAMGLTLRRHPLALLRPMLSARRFVSAAEL 951

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKG 1012
                     R A +V  +Q+  T  G
Sbjct: 952  AQYQPRQTARAAGLVTVRQRPSTSNG 977


>gi|71735001|ref|YP_274870.1| error-prone DNA polymerase [Pseudomonas syringae pv. phaseolicola
            1448A]
 gi|123775093|sp|Q48IB1|DNAE2_PSE14 RecName: Full=Error-prone DNA polymerase
 gi|71555554|gb|AAZ34765.1| DNA polymerase III, alpha subunit, putative [Pseudomonas syringae pv.
            phaseolicola 1448A]
 gi|320329030|gb|EFW85029.1| error-prone DNA polymerase [Pseudomonas syringae pv. glycinea str.
            race 4]
          Length = 1031

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 288/1040 (27%), Positives = 473/1040 (45%), Gaps = 113/1040 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + ++ +     A+AITD   L   +   Q + + G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASISTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-----------RM 119
            IG ++ I+                  P  VLLV +  GY+ L +L++           R+
Sbjct: 65   IGSEMHIE----------------NGPKAVLLVESQTGYEALCKLITVARRRARKGEYRL 108

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
               D    S  +   WL +I  +    L  G                        ++ F 
Sbjct: 109  LREDFEPSSDGLLAIWLPDIEGDAQACLAHGR---------------------WLRERFA 147

Query: 180  DRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +RL++ ++ HRG D   R + ++ LA +  +P VA+ +    +       D + A+ H T
Sbjct: 148  ERLWLGVELHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHT 207

Query: 239  VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V++         + +L+    +   + D    L  +V IARRC+F L+      P    
Sbjct: 208  TVAEAGHLLFANGERHLRPLDALAEHYPDW--LLAESVRIARRCTFDLKQLKYEYP---- 261

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E     +   + LR     G   R   G           R +++ EL +I   KF  YF
Sbjct: 262  HELVPKGQTPTSWLRELTERGARKRWPNGLTPA------TRAQVEKELALITEKKFDSYF 315

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D +++A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD
Sbjct: 316  LTVHDIVEFARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISRERNEPPD 374

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  DRR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L +
Sbjct: 375  IDVDFEHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPDQINALAE 434

Query: 478  LIPNDPAHPVSLQAIADDSRFREARL-AD-PSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                  A      ++    R RE    AD P + R+L ++ +L G  RH S H  G VI 
Sbjct: 435  ------AFSRWSDSLPSPERLREYGFDADTPILKRVLALTGELIGFPRHLSQHPGGFVIS 488

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594
            + PL  LVP+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG 
Sbjct: 489  EHPLETLVPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGK 548

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +  L+ +P DD ETY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGP
Sbjct: 549  RWTLADLPGDDRETYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGP 608

Query: 655  IDNIVVYNN-RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            I   +V+   R+  KE+ ++  P +  + + T GV ++QEQVM++A + +GY+  EAD L
Sbjct: 609  IQGDMVHPYLRRRNKEEAITYPPKLKSVFERTLGVPLFQEQVMEVAIIAAGYTPGEADEL 668

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM   K    ++  +ER  +G  KNG     A  IFE +  F  YGF +SHAA++A++
Sbjct: 669  RRAMAAWKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALL 728

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG- 831
            +Y + W+K H P  F  A +           +  QDAR+ +I+I P  V     D  +  
Sbjct: 729  TYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEP 788

Query: 832  --------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                    +  I   L  ++G     AR I  A + + F    D   R     L+ R  E
Sbjct: 789  LDHPDSTRNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLTLRA---GLDARAAE 845

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            +L  +GA           L+ L   +  A+W E         +F ++  +   ++TL   
Sbjct: 846  ALADSGA-----------LRGLIGHRHRARW-EVAGVEAQRPLF-NDLPSEDTQVTLPLP 892

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR---LAAM 1000
            +V         +   LG     HPL + +   R++  K +  S   +   N R   +A +
Sbjct: 893  TVAED---LMADYATLGTTLGPHPLALLR---RQLAAKRFRSSQDLLSLENDRTLSVAGL 946

Query: 1001 VVSKQQKKTRKGSRIGWVTF 1020
            V+ +Q+  T  G     VTF
Sbjct: 947  VIGRQRPGTASG-----VTF 961


>gi|330685790|gb|EGG97424.1| DNA polymerase III, alpha subunit [Staphylococcus epidermidis
           VCU121]
          Length = 626

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 233/684 (34%), Positives = 364/684 (53%), Gaps = 76/684 (11%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           +L +H+SY LL  +L +++++ K   +    +AITDTN L+   +F      AGI P+ G
Sbjct: 4   YLNIHTSYDLLNSSLRISDVVKKAKNEGIEHLAITDTNVLYGYPKFYDACLEAGIHPVFG 63

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             + + + D L                VLL    +G + L +L S + +    K+   I 
Sbjct: 64  --MTVYLTDGLYQL-----------ETVLLAQNNDGLKDLYQLSSAIKM----KEKEDIP 106

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
           + WL+      +I+                    AE+  L F   F D+ +V L +    
Sbjct: 107 IEWLKRYANHLVIIFKS-----------------AEEHHLQFIDAFNDKEHVYLNQD--- 146

Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKDRPRV 248
                     +A  H    V  N   +L+ ED +    L A+  ++    V  Q+D    
Sbjct: 147 ---------CIAINHR-SFVWLNTMRYLNNEDADTISALQAIKENSKLDLVAEQEDYHE- 195

Query: 249 TPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               +L N++E+ ++  SD  E + NT +IA+ C+  L  H  +LP+F        Q   
Sbjct: 196 ----HLFNKNELRNLECSD--ELIVNTDKIAQMCTAELNYHQSLLPQF--------QTPN 241

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               +      LE +L    + +     +Y +RL  E ++I  M F  YFLIV+D I +A
Sbjct: 242 GETSKIYLWQKLEDQLNHLNLKQ----PEYWKRLKHEYDIITNMGFEDYFLIVSDLIHYA 297

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           K +++ VGPGRGS AGS+ +Y L IT IDP+RF+LLFERFLNP+R++MPD DIDF   RR
Sbjct: 298 KTHDVMVGPGRGSSAGSLVSYLLGITTIDPIRFNLLFERFLNPERVTMPDIDIDFEDTRR 357

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           ++VI+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ + KLIP+     +
Sbjct: 358 EKVIQYVQEKYGQLHVSGIVTFGHLLARAVARDVGRIMGFDEITLNEISKLIPHKLG--I 415

Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
           +L+    +  F++    +   +R  EI +KLEGL RH STHAAGI+I D  L +  P+  
Sbjct: 416 TLEEAYQNDEFKQFVHRNYRHERWFEICKKLEGLPRHTSTHAAGIIINDHALYEYAPL-- 473

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606
            +     +TQ+ M   E+ GL+K DFLGL+ L+++ + ++ + +   + +++  IPFDD 
Sbjct: 474 TLGDTGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIINQVKKDLNINIEIERIPFDDP 533

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
           + + LL+   T GIFQLES G+R+ L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++
Sbjct: 534 KVFELLSQGDTTGIFQLESDGVRRVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRH 593

Query: 667 GKEKIVSIHPLIDPMLKETQGVII 690
              K+  +H  + P+LK T GVII
Sbjct: 594 DPSKVEYLHKDLAPILKNTYGVII 617


>gi|320324026|gb|EFW80109.1| error-prone DNA polymerase [Pseudomonas syringae pv. glycinea str.
            B076]
          Length = 1031

 Score =  358 bits (918), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 288/1040 (27%), Positives = 473/1040 (45%), Gaps = 113/1040 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + ++ +     A+AITD   L   +   Q + + G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASISTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-----------RM 119
            IG ++ I+                  P  VLLV +  GY+ L +L++           R+
Sbjct: 65   IGSEMHIE----------------NGPKAVLLVESQTGYEALCKLITVARRRARKGEYRL 108

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
               D    S  +   WL +I  +    L  G                        ++ F 
Sbjct: 109  LREDFEPSSDGLLAIWLPDIEGDAQACLAHGR---------------------WLRERFA 147

Query: 180  DRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +RL++ ++ HRG D   R + ++ LA +  +P VA+ +    +       D + A+ H T
Sbjct: 148  ERLWLGVELHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHT 207

Query: 239  VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V++         + +L+    +   + D    L  +V IARRC+F L+      P    
Sbjct: 208  TVAEAGHLLFANGERHLRPLDALAEHYPDW--LLAESVRIARRCTFDLKQLKYEYP---- 261

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E     +   + LR     G   R   G           R +++ EL +I   KF  YF
Sbjct: 262  HELVPKGQTPTSWLRELTERGARKRWPNGLTPA------TRAQVEKELALITEKKFDSYF 315

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D +++A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD
Sbjct: 316  LTVHDIVEFARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISRERNEPPD 374

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  DRR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L +
Sbjct: 375  IDVDFEHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPDQINALAE 434

Query: 478  LIPNDPAHPVSLQAIADDSRFREARL-AD-PSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                  A      ++    R RE    AD P + R+L ++ +L G  RH S H  G VI 
Sbjct: 435  ------AFSRWSDSLPSPERLREYGFDADTPILKRVLALTGELIGFPRHLSQHPGGFVIS 488

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594
            + PL  LVP+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG 
Sbjct: 489  EHPLETLVPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGK 548

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +  L+ +P DD ETY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGP
Sbjct: 549  RWTLADLPGDDRETYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGP 608

Query: 655  IDNIVVYNN-RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            I   +V+   R+  KE+ ++  P +  + + T GV ++QEQVM++A + +GY+  EAD L
Sbjct: 609  IQGDMVHPYLRRRNKEEAITYPPKLKSVFERTLGVPLFQEQVMEVAIIAAGYTPGEADEL 668

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM   K    ++  +ER  +G  KNG     A  IFE +  F  YGF +SHAA++A++
Sbjct: 669  RRAMAAWKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALL 728

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG- 831
            +Y + W+K H P  F  A +           +  QDAR+ +I+I P  V     D  +  
Sbjct: 729  TYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEP 788

Query: 832  --------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                    +  I   L  ++G     AR I  A + + F    D   R     L+ R  E
Sbjct: 789  LDHPDSTRNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLTLRA---GLDARAAE 845

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            +L  +GA           L+ L   +  A+W E         +F ++  +   ++TL   
Sbjct: 846  ALADSGA-----------LRGLIGHRHRARW-EVAGVEAQRPLF-NDLPSEDTQVTLPLP 892

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR---LAAM 1000
            +V         +   LG     HPL + +   R++  K +  S   +   N R   +A +
Sbjct: 893  TVAED---LMADYATLGTTLGPHPLALLR---RQLAAKRFRSSQDLLSLENDRTLSVAGL 946

Query: 1001 VVSKQQKKTRKGSRIGWVTF 1020
            V+ +Q+  T  G     VTF
Sbjct: 947  VIGRQRPGTASG-----VTF 961


>gi|326773455|ref|ZP_08232738.1| DNA polymerase III, alpha subunit [Actinomyces viscosus C505]
 gi|326636685|gb|EGE37588.1| DNA polymerase III, alpha subunit [Actinomyces viscosus C505]
          Length = 1132

 Score =  358 bits (918), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 316/1105 (28%), Positives = 493/1105 (44%), Gaps = 152/1105 (13%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS+YS L+GA   +++          A+A+TD + +   ++ +Q   A G+  I
Sbjct: 7    YAELHAHSAYSFLDGANEPDDLASAAVELGLEALALTDHDGVPGIVKHAQAGRAHGLPTI 66

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ--- 127
             G +L +    +L +  +  T                GY+RL+  +SR + LD G++   
Sbjct: 67   HGTELTLADGSHLPVLARNPT----------------GYRRLVSAISR-HNLDAGQRQEP 109

Query: 128  ---------SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS------QVAEKRLL 172
                     ++R   +   E      ++LTG ++GP+ RA            + A+  L 
Sbjct: 110  AHDLPTLASALRSDPTGQTEAAAGTCLVLTGTANGPLRRALGDPRRPDAWDLKAADTCLG 169

Query: 173  TFKKLFG--DR--------------------LYVNLQRHRG-YDRYRESQVVQLAYTHEL 209
               +LF   DR                    L V L    G  D      + +LA+TH L
Sbjct: 170  HLTELFAAPDRGRPTSTTTGDTQVEGDAAVGLAVELTLDGGPTDAALTDALTRLAHTHRL 229

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLP 268
            PLVAT         D    DVL +    T + +  R  + P   +L+   +M  +    P
Sbjct: 230  PLVATGAVRCARPADARLADVLTSTRLVTDL-EGARGHLPPIGRWLRGAQDMALLHRRSP 288

Query: 269  EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
             A++   E+A   +F L + AP LP        D    E +       + L     QGA 
Sbjct: 289  GAVDLAAELAADLAFDLSLIAPDLP--------DADVPEGH----TPASWLCELTRQGAT 336

Query: 329  AKGYHAQDYRQRLDF---ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
             +    Q++ +  D    EL VI  + F GYFLIV   +++  ++ I +  GRGS A S 
Sbjct: 337  RRYGTPQEHPRAWDVLNHELEVIESLGFPGYFLIVHAIVEFCAQSGI-LCQGRGSAANSA 395

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
              YAL IT +D +R  +LFERFL+P R   PD D+D    RR+EVI++V ++YG ER AQ
Sbjct: 396  VCYALGITAVDAVRHQMLFERFLSPGRAGYPDIDLDIEACRREEVIQHVYSRYGRERAAQ 455

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DPAHPVSLQAIADDSRFREARLA 504
            +    S + ++A+RD  RAL  P    D   K +       P  L    D+       + 
Sbjct: 456  VANVISYRPRSAVRDAARALGHPAGVQDAWAKQMERWTSVRPGGLSGQNDE-------VP 508

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            +P    +L+I++KL  L RH   H  G+V+  RP++++ P+      +  V Q++     
Sbjct: 509  EP----VLDIAEKLLRLPRHLGVHPGGMVLCGRPVTEVCPVRWAAMDNRSVLQWDKDDCA 564

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV------------------DLSLIPFDDH 606
            +AGL+KFD LGL  LT L+ +   LAQRG  V                   L  +P +D 
Sbjct: 565  EAGLVKFDLLGLGALTALRLAFTTLAQRGQAVPDAVTEGELRTSQSGRPWGLHTLPEEDP 624

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNR 664
              Y LLT   T+G+FQ+ES      L  ++P    DI+  V+L RPGPI  D +  Y  R
Sbjct: 625  AVYRLLTAADTVGVFQVESRAQMATLPRLRPQTFYDIVVEVALIRPGPIQGDAVNPYIRR 684

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKE 723
            + G+E++  +H  + P L +T GV ++QEQ+MQIA   +G+S +EAD LR+AMG K+  E
Sbjct: 685  RLGREEVTYLHDSLKPALTKTLGVPLFQEQLMQIAVDAAGFSPAEADSLRQAMGAKRSIE 744

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             MD  +++ I+G    GI +  A  I+  L  FA++GF +SHA ++A + Y +AW+K   
Sbjct: 745  RMDALRDKLIAGMRSRGIDEPTAETIYSKLRSFAEFGFPESHAFSFAYLVYASAWLKARK 804

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------------- 830
            P +F A  +  +       +    DAR+  ++++P  VN       V             
Sbjct: 805  PEDFYAGVLAAQPMGFWSPQSLVADARRHGVRVLPADVNRSLAQATVEQREDHQGAGPSD 864

Query: 831  ------------------GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSR 871
                               D  +   LA IKG+G   A+ I+ E  A  P+  L D   R
Sbjct: 865  QWEPLRPHPAAPSSLDIHDDLAVRLGLAPIKGLGERAAQAIVTERCAHGPYRDLADLARR 924

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE- 930
            V    L+R  LESL  +GALD  G  R Q L +   +        +  + +   ++    
Sbjct: 925  V---SLSRSRLESLAVSGALDSLGVERRQALWAA-GVLSDEHGRRRGASRQGPEVWCQPT 980

Query: 931  -KGTF--SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              GT   S   TL   +      R   +  + G    G PL + +  L   G+    +  
Sbjct: 981  LPGTAVGSQAPTLPTMTDRE---RQAADLSLTGVSTQGSPLRLLRASLTADGVLSAADLA 1037

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKG 1012
                G+ +R+A +V  +Q+  T  G
Sbjct: 1038 DQEHGSRVRVAGVVTHRQRPHTASG 1062


>gi|325168586|ref|YP_004280376.1| DNA polymerase III alpha chain [Agrobacterium sp. H13-3]
 gi|325064309|gb|ADY67998.1| DNA polymerase III, alpha chain [Agrobacterium sp. H13-3]
          Length = 1085

 Score =  357 bits (917), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 291/1029 (28%), Positives = 474/1029 (46%), Gaps = 92/1029 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  LQV + +S L GA S   + D        AI + D N+L   +   + + A G++ 
Sbjct: 2    SYAELQVTTHFSFLRGASSAQELFDTAKLLGISAIGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+LD  + D +              S+++       Y RL  L++    L + +   
Sbjct: 62   VVGCRLD--LADGM--------------SLLVYPMDRPAYSRLTRLIT----LGKSRGGK 101

Query: 130  RIC-LSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              C L W   +  +EG+I +              +++  A+ R L    +FGDR YV+L 
Sbjct: 102  NNCILHWDDVMAYSEGMIGILVPD--------LPDATCAAQLRKLA--HVFGDRAYVSLC 151

Query: 188  -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK--D 244
             R R  D+ R  ++  +A    +  V TN+ LF      +  D++  + H+T +     +
Sbjct: 152  LRRRPNDQMRLHEISNMAARFRVKTVVTNDVLFHEPGRRQLQDIVTCIRHNTTIDDVGFE 211

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R   D YLK   EM  +F   PEAL  ++EI RRC F L+      P    +E     
Sbjct: 212  RER-HADRYLKPPEEMARLFPRYPEALARSMEIVRRCKFSLEELTYQYP----EEAIVPG 266

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K+ +  L +        R  +G         D  + +  EL++I  MK++ YFL V   +
Sbjct: 267  KDAQASLEHYVWECAPDRYPEGL------PPDVLKTVRHELDLIRTMKYAPYFLTVFSIV 320

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  
Sbjct: 321  RFARSQGI-LCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEH 379

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI+++   Y H++ A   T    +AK A+RDVG+AL +P   +  L   +     
Sbjct: 380  ERREEVIQWIYKTYRHDKAALCATVTRYRAKGAIRDVGKALGLPEDVIKALSSGM----- 434

Query: 485  HPVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
               S      D   RE  L +P   RL   L+++Q+L G  RH   H  G V+    L  
Sbjct: 435  --WSWSEEVPDRNIRELNL-NPDDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDD 491

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            LVP+      D  + +++   +E    +K D L L  LT + K+   + + +G  +DLS 
Sbjct: 492  LVPIEPATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMAKAFHLIREDKGENLDLST 551

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            I  +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 552  IQQEDAATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMV 611

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R+ GKE +    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M 
Sbjct: 612  HPYLRRREGKEPVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMA 671

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K    + + KE+ +SG  KNG S   A   F  L  F  YGF +SHAA++A+I+Y + 
Sbjct: 672  TFKFTGGVSRFKEKLVSGMVKNGYSAEFAEKTFSQLEGFGSYGFPESHAASFALIAYASN 731

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVDFKVGD-- 832
            ++K HYP  F AA +  +        +   DA +  +++ P  VN     C   K+G   
Sbjct: 732  YIKCHYPDVFCAALLNSQPMGFYAPAQIVGDAIKHGVEVRPVCVNRSRWDCTLEKIGSID 791

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             + +      +KG+    A  I+ A  + PF S++D   R           E+LV     
Sbjct: 792  RHAVRLGFRQVKGLAVADAARIVTARMNSPFLSVDDMWRRSSVPT------EALVQLAEA 845

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDK----ITLEKF 943
            D F       L SL   ++ A W  K   ++   +FA     E    +++    + L + 
Sbjct: 846  DAF-------LPSLKLERRDALWAIKALRDEPLPLFAAATEREMAAIAEQQEPEVALRQM 898

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
            +  ++ +    +    G     HP+   +  L    I    E++    G  +  A +V+ 
Sbjct: 899  TDGHNVI---EDYSHTGLTLRQHPVAFLRRDLSARNIIPCAEAMNARDGRWVYTAGLVLV 955

Query: 1004 KQQKKTRKG 1012
            +Q+  + KG
Sbjct: 956  RQKPGSAKG 964


>gi|109522633|ref|YP_655445.1| gp66 [Mycobacterium phage PLot]
 gi|88910740|gb|ABD58665.1| gp66 [Mycobacterium phage PLot]
          Length = 1066

 Score =  357 bits (915), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 288/954 (30%), Positives = 448/954 (46%), Gaps = 81/954 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV L  HS++S  +G   +   + ++A     A+A+T+  NL S  +  +     GI+PI
Sbjct: 3   FVSLHTHSTFSYGDGYGPVKEHVQRVAELGMGALALTEHGNLSSHAQLEKACNEIGIKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            GC+L +      +  +Q            +L     G Q L  +V++ +     K   R
Sbjct: 63  FGCELYVAPPGENRKCHQ-----------TVLAMNEVGLQNLNRIVTKSW-----KNFYR 106

Query: 131 I-CLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ-----VAEKRLLT--------FK 175
               SW + E   EGLI+L+G +   +        S       A KR +T        ++
Sbjct: 107 WPTTSWKMLEEHHEGLIVLSGCADSVLSCTLLGGKSYGDKRLTASKRDITRAAGLIGRYQ 166

Query: 176 KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELP---LVATNNSLFLSEEDYEAHDVLM 232
           ++FGDR Y+  QR  G DR      + LA   EL    LV T +  +    D E   +L 
Sbjct: 167 EVFGDRYYLETQRFPGLDRTCALNPL-LARLSELTGARLVGTADVHYPRGSDNEMQKILH 225

Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL----------PEALENTVEIARRCS 282
           A AH     +        D  L        I+ DL           EA+  +  IA RC+
Sbjct: 226 A-AHRGSTVEATEASWEYDILLTYPESDREIYMDLVGTGLTKAQAREAVLESGRIAERCN 284

Query: 283 FILQVHAPILPRFIEKECDDIQ-KEEENELRNKAV-AGLEVRLAQGAIAKGYHAQDYRQR 340
            IL  + PI      KE D  Q     NEL  K +  G   R+A     +  + Q Y+ R
Sbjct: 285 VILPKNQPIRFPKPTKEVDGTQVPMSANELIRKWLNEGWHFRMATNPNMRK-NRQAYKAR 343

Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
           ++ EL ++    F  YFL+++D ++WAK + IPVGP RGS A S+  Y L IT++DP+ F
Sbjct: 344 VEHELGMMEEKDFLDYFLVLSDAVRWAKDHKIPVGPARGSAAASLVCYLLRITEVDPMLF 403

Query: 401 -SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
             +LFERF++P R  +PD D+DF  DRR EV RY++ KYG +RV  I  F   + K ++ 
Sbjct: 404 PHMLFERFIDPTRTELPDVDLDFSDDRRIEVKRYLEEKYGADRVGNIGNFTRYRGKNSID 463

Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ--K 517
           DV R   +P  + + +  LI         +    +D+ F     A   ++R  E++   +
Sbjct: 464 DVARVYNIPVWETEIVKNLIIERSGGDSRISDSLEDT-FNMFPKAAAVLERHPELANAIR 522

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMY--RDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
           LEG YR    HAAGIVI + P++    +Y          V  ++ K  E  G++K DFLG
Sbjct: 523 LEGNYRGMGVHAAGIVISNTPITDTCAVYERESAGKTTQVIAYDKKDGEYVGMLKADFLG 582

Query: 576 LKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
           L T+ ++  +LD +   G+ + DL  IP DD +           GIFQ E    R     
Sbjct: 583 LSTMGMIGIALDMI---GMDLEDLYRIPLDDQKVLEAFRRGDVTGIFQFEGRATRIVCSD 639

Query: 635 MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           + PD  + +  + +L RPGP+       Y   K+G++     HP++D +   T G ++YQ
Sbjct: 640 VVPDHFQHLADINALSRPGPLFSGMTAAYCEVKHGRKTPERYHPILDNLTDWTYGQVVYQ 699

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKN-GISKTIAVNIF 750
           EQV+   + L G+ +SE   +R+ + +K+ E + + + + F   A +N G +   A  I+
Sbjct: 700 EQVLSTIRELGGFPMSEVHSIRKIISQKLGEAQFEAKYKMFEDNACQNHGCTPEQAQKIW 759

Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
             LA  A Y FN +H  +Y++++Y   W+K H+P  F AA   L   N EK+ K  +DA 
Sbjct: 760 RFLATSATYSFNIAHCISYSMLAYWQMWIKQHHPTAFYAAQ--LRKVNDEKLYKLMRDAV 817

Query: 811 QFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIME-----------ASA 858
           + NI I+PPS+N     +    +  +      I GVG  T+  I+E           A A
Sbjct: 818 RHNISILPPSINESMASWSAPMEGVVRAGFLQIPGVGPKTSEVIVEWRNQKIRKGQKAIA 877

Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLV-FAGALDCFGYSRMQ-LLQSLDNIQK 910
               D +  +   ++ K +  + +E +V F  A D FG +R+Q L +SL  I K
Sbjct: 878 ASASDLM--WSDLLEVKGIGPKSIEKIVAFCEAEDPFGLNRVQDLFKSLRRIIK 929


>gi|293363769|ref|ZP_06610510.1| putative DNA polymerase III DnaE [Mycoplasma alligatoris A21JP2]
 gi|292552635|gb|EFF41404.1| putative DNA polymerase III DnaE [Mycoplasma alligatoris A21JP2]
          Length = 973

 Score =  357 bits (915), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 217/583 (37%), Positives = 335/583 (57%), Gaps = 24/583 (4%)

Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
           +RL+FE   I ++ F  YFLI+ D + +A+KN I VGPGRGS AGS+ ++ L IT I+PL
Sbjct: 254 ERLNFEFETIKKLGFVNYFLIINDVLSYARKNGIYVGPGRGSAAGSLISFLLEITQINPL 313

Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
           +++LLFERFLN  R+S+PD DID   DRRDE+ +Y+  KYG++  A I TF S+ AK A+
Sbjct: 314 KYNLLFERFLNIQRVSLPDIDIDIQDDRRDEIAQYIVEKYGYQNTAFISTFQSIGAKMAI 373

Query: 459 RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
           RD+GR L +P  +VD + K I  +      L+  +  +R  +A + +       E++ ++
Sbjct: 374 RDIGRYLNIPLKKVDSISKSIDLNE----DLKTASKSNRSFKAEIEELPELL--ELALQI 427

Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
           EGL R    H AGI+I DR ++ + P + +  +++   Q  +  +EK GL+K DFLGLKT
Sbjct: 428 EGLPRQQGMHPAGIIICDREITNIAPTHANT-ANMAQVQLTLNNLEKYGLLKIDFLGLKT 486

Query: 579 LTLL---------QKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
           L+++         +   DFL +    +       ++++T+ +L    T GIFQLES GM+
Sbjct: 487 LSIIRDIESVIPEEYKFDFLLKNNPSI------LNNNDTFRILNEGLTEGIFQLESPGMK 540

Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
            A++ ++ D   D++A++SL+RPGP+  I  Y   K   + I  IHPL D ++KET GVI
Sbjct: 541 SAIKKVEIDSFNDLVAIISLFRPGPMQFINDYAKGKKDSKLIEKIHPLYDEIVKETFGVI 600

Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
           +YQEQ+MQI Q +S  S S+AD+LRRA+ KK +  +   K+ FI    KN I   +   I
Sbjct: 601 VYQEQIMQIVQKVSNMSFSQADLLRRAISKKDENLIHSGKKEFIQNGLKNNIELNVLEKI 660

Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
           ++ +  FADYGFNKSHA AYA ++Y+ A+ KT+Y   F  A +T        I K+ ++ 
Sbjct: 661 YKRIEMFADYGFNKSHAVAYAYLTYKMAYYKTNYKNVFYRALITSANGTHLTINKYVKET 720

Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDF 868
           ++ N+ +  P +N       V    ++  +  IKGVG      I+E    +  F+S  + 
Sbjct: 721 KKINLPVASPDINRSKNYVVVSGGILFLPINMIKGVGGAALSKILEQRDKNGVFNSFFET 780

Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
             R+    +   +L  L+ +  L  FG +   LL SL   + Y
Sbjct: 781 YLRLRLAGVGEAILLLLIKSNTLRIFG-NCAALLNSLSLAKNY 822


>gi|297195254|ref|ZP_06912652.1| DNA polymerase III alpha subunit [Streptomyces pristinaespiralis ATCC
            25486]
 gi|197719664|gb|EDY63572.1| DNA polymerase III alpha subunit [Streptomyces pristinaespiralis ATCC
            25486]
          Length = 1175

 Score =  357 bits (915), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 297/1102 (26%), Positives = 484/1102 (43%), Gaps = 123/1102 (11%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            + P F HL   S +S+  GA     +  + A     A+A+TD + L  A+ F       G
Sbjct: 6    RMPYFTHLHTVSGFSVRYGASHPERLAGRAAERGMDALALTDRDTLAGAVRFVTACAKEG 65

Query: 67   IQPIIGCQLDIDMQDNLKM-TNQGKTPF-------PTVPSIVLLVSTAEGYQRLIELVSR 118
            ++P+ G  L +  +   +    + +TP         + P  V L     G+  L  +V+ 
Sbjct: 66   VRPLFGVDLAVGERARQEGPAERRRTPVRGGAFVDESAPRTVFLARDRRGWADLCRMVTA 125

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             +  D         L W    G +GL +L G SS  +  A        A K L  +++ +
Sbjct: 126  AHATDPRSP----LLPWDDNHG-DGLTVLLGPSS-EVGGALAAGRPDRAAKLLAPWRERY 179

Query: 179  GDRLYVNLQRHRGYDRYRES-----QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            GDRL + +  H G      S     + + LA    +  V TN   +         DVL A
Sbjct: 180  GDRLRLEVVHHGGGGTGPGSLRHAARTLGLAAEQGVRAVLTNAVRYADPGQGPVADVLDA 239

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
             A   V     +   + + +LK+ + M  +   + EA     E+A R   + +  A    
Sbjct: 240  -ARRLVPIDPRKGLDSGERWLKDPAAMAVLAGRVAEAAGFRRELAHRLLAMTEETA---- 294

Query: 294  RFIEKEC-----DDIQKEEENELRNKAVAGLEVRLAQ---------GAIAKGYHAQ-DYR 338
                 EC     DD+     +     A+ G E R AQ         G + +GY  + +Y 
Sbjct: 295  ----AECLVDPEDDLGIGSVH-FPEPALVGAEYRTAQRVLASRAAAGMVLRGYDGRREYW 349

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +R+  EL++IA   F+ YFL VA  +   K   I V   RGSGAGS+  + L I   DP+
Sbjct: 350  ERMHHELDIIAHHGFASYFLTVAQVVDDVKGMGIRVA-ARGSGAGSLVNHLLGIAHADPV 408

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               LL ERFL+  R  +PD DID    RR EV R +  ++G ERVA +    + + + A+
Sbjct: 409  EHGLLMERFLSKRRRVLPDIDIDVESARRLEVYRKIIGRFGEERVATVAMPETYRVRHAI 468

Query: 459  RDVGRALQMPYSQVDRLCKLIPN--------DPAHPVSLQAIADDSRFREARLADPSVDR 510
            RDVG AL M  +++D+L K  P+          A    L+ +A +S+ RE         R
Sbjct: 469  RDVGAALSMDPAEIDKLAKSFPHIRARDARAALAELPELREVATESKRRE---------R 519

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            + E+ + L+ L R  + H  G+++ D  L    P+        P++QF+   +E+ GL+K
Sbjct: 520  MWELVEALDALPRGVAMHPCGVLLSDASLLTRTPVVPTSGEGFPMSQFDKDDVEELGLLK 579

Query: 571  FDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             D LG++  + +  ++ +     G +VD+  +P  D  TY L+ +  TLG FQ+ES G R
Sbjct: 580  LDVLGVRMQSAMAHAVAEVRRATGEEVDVDAVPPGDPATYRLIRSTETLGCFQIESPGQR 639

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
              +  +QP+   D++  +SL+RPGP+  D +  +   ++G+      HP ++  L++T G
Sbjct: 640  DLVGRLQPETFGDLVVDISLFRPGPVAADMVRPFIEARHGRAPARYPHPDLEGPLRQTYG 699

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            V+++ EQ+++I  +++G    EAD +RR +     E   K K  F   A   G +  +  
Sbjct: 700  VVVFHEQIIEILDIMTGCGRDEADRVRRGLSD--PESQGKIKTWFARNAGAKGYAPEVIG 757

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
              +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    
Sbjct: 758  RAWEIIEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLA 816

Query: 808  DARQFNIQIMPPSVN-------------------------------TPCVDFKVGDNR-- 834
            DAR+  + ++P  VN                                P  D + G  R  
Sbjct: 817  DARRRGVPVLPLDVNRSAVAHRIELVSDDVSSRASAGAGGGSRGGSVPAADARSGQGRWG 876

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +  +L+ + G+    A  I    A +P+ SL DF  R      +R V E L   GALD F
Sbjct: 877  LRLALSDVHGISEAEAARI---EAGQPYSSLLDFWQRACP---SRPVAERLAQVGALDAF 930

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSV 950
            G +R  LL  L          E +RT +    +  +    +G  +  + L        + 
Sbjct: 931  GANRRDLLLHL---------AELHRTRRGAASYGSQLPLAQGQKTAPVGLPDL---GDAE 978

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R   E  VLG   S H +  +   L ++G+   +       G  + +A    + Q    R
Sbjct: 979  RLSAELGVLGMDASRHLMADHHAFLAELGVLSAQRLRDAPHGRTVLVAGAKAATQTPPIR 1038

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G R+ + T  + +   +  FF
Sbjct: 1039 SGRRVIFTTLDDGSGLVDLAFF 1060


>gi|149919649|ref|ZP_01908128.1| DNA polymerase III, alpha subunit [Plesiocystis pacifica SIR-1]
 gi|149819592|gb|EDM79020.1| DNA polymerase III, alpha subunit [Plesiocystis pacifica SIR-1]
          Length = 1125

 Score =  357 bits (915), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 292/1088 (26%), Positives = 503/1088 (46%), Gaps = 125/1088 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V L V S++S LEGA   + +++  A    PA+ + D + +   +     A    ++ +
Sbjct: 4    YVPLTVKSNFSFLEGASHPSELVETAAELGLPALGLCDRDGVHGVVRAHMAAKEVNLKLL 63

Query: 71   IGCQLDI-DMQDNLKMTN-------------------QGKTPFPTV---PSIVLLVSTAE 107
            +G +L +  + + L +T+                   +G+ P P +     + +L    +
Sbjct: 64   LGAELSLGSLPEQLMLTSPTPRRAQQNRRSSRGRGRGRGRKPPPELGEGSRVTVLAEDRD 123

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF--NSSQ 165
            G+ RL  L+S    +  G+         L E+  E    + G ++    R+      +  
Sbjct: 124  GWARLCRLLS----IAHGRGPKGQARLTLDELAGEAGTGVYGEAANSPARSMHARPGAGL 179

Query: 166  VAEKR----LLTFKKLFG-DRLYVNLQRHRGYDRYRESQVVQLAYTH-ELPLVATNNSLF 219
            +A  R    L    + +G DR+Y  + RHR  +       ++ A  H  +  V + + L+
Sbjct: 180  IALVRDPQHLPLLAEAWGRDRVYALVTRHRRAEELALEDKLRAAAQHVGVACVGSTDVLY 239

Query: 220  LSEEDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
                     DVL  V A +T+       +   +H L +   M   F+D PE L+ ++EIA
Sbjct: 240  HRSARRPLQDVLACVRAGATLREAGQAIQGNAEHALDSIVAMRERFADCPELLDRSLEIA 299

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
             RCSF L     + P     E     + E + LR    AG   R A   I     AQ   
Sbjct: 300  ERCSFSLDQLRYVYP----GETLPAGRSEGDHLRELTFAGARTRYAD-RIPPEVTAQ--- 351

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
              L+ EL++IA + + GYFL + + +++ ++  I +  GRGS A S   Y L IT IDP+
Sbjct: 352  --LERELSLIAELDYGGYFLTMKEIVEFCRREGI-LCQGRGSAANSAVCYCLGITAIDPV 408

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
            R  LLFERFL+ +R   PD D+D   +RR+EVI++V  ++G    A +      +A++A+
Sbjct: 409  RMDLLFERFLSRERAEPPDIDLDIEHERREEVIQWVYARWGRRHAAMVANVIRYRARSAV 468

Query: 459  RDVGRALQMPYSQVDRLCKLIPN----DPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            R+VG+ L +P + +DR+ KL+ +        P  L+ +  D          P  + L+ +
Sbjct: 469  REVGKVLGLPQTCLDRVSKLLGHHYHGGSVDPELLRTVGLDPEH-------PIHEHLIRL 521

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            S +L    RH S H  G ++G  P+  +VP+         V Q++   +E  GL K D L
Sbjct: 522  STELLDFPRHLSIHPGGFLLGSDPVDSMVPIEPASMEGRTVIQWDKYDVEDLGLFKVDLL 581

Query: 575  GLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL  L+ +++ LD + A  GV +D++ IP++D  T+ LL    T+G+FQ+ES      L 
Sbjct: 582  GLGALSHVRRCLDLIGAHEGVDLDMATIPYEDTPTFDLLCRGDTVGVFQVESRAQMAMLP 641

Query: 634  GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
             ++P C  D++  V++ RPGPI  D +  Y  R+ G E I   HP ++ +L +T GV I+
Sbjct: 642  RLRPRCFYDLVIEVAIVRPGPIQGDMVHPYLRRRQGHEPIEFPHPKLERVLAKTCGVPIF 701

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            QEQVM++A  ++ Y+  EAD LRR MG  +    ++  ++R +S    NGI +  A  +F
Sbjct: 702  QEQVMKLAIAVADYTPGEADQLRRDMGAWRSSGRIEAHEQRLVSRMMANGIEREFAERVF 761

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            + +  F +YGF +SHAA++A+I++ TAW++ H+   F  A +  +      +    +DAR
Sbjct: 762  QQIKGFGEYGFPESHAASFALIAWVTAWLRAHHMPAFSCALLNSQPMGFYSVATLVEDAR 821

Query: 811  QFNIQIMPPSVNT-------------------PCVDFKVGDNRIYYSLAAIKGVG----- 846
            +  +++ P  V +                   PC  +      +   L  IKG+      
Sbjct: 822  RHGVEVRPIDVRSSDWDCLLEPRKLEGAGGPDPCSRWA-----MRMGLRWIKGLAHKDAA 876

Query: 847  ---TTTARHIMEASADKP----FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
                     + + S   P    +  L+DF   V   +L ++ L  L  AGAL+ F  +  
Sbjct: 877  AVVAARRARLAKNSGKNPGRPAWRDLDDF---VRDTRLPKKSLTLLAEAGALEAFDRA-P 932

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-RFENEQRV 958
            + L    + ++ A W  +    + +           D+++L + +    +  R +  + V
Sbjct: 933  RPLADRTSTRRDASWAVRGALVRAD-----------DRLSLGEAAAHQPAFPRLDRHEAV 981

Query: 959  LGFYFS------GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
               Y +      GHPL+  +  LR+  +   E+  A   G  +R   +V+ +Q+  T  G
Sbjct: 982  AWDYRTSFHSTRGHPLEQLRARLRRARVPHAEQLAALPTGRKVRYVGLVICRQRPGTASG 1041

Query: 1013 SRIGWVTF 1020
                 VTF
Sbjct: 1042 -----VTF 1044


>gi|302187800|ref|ZP_07264473.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae 642]
          Length = 1031

 Score =  357 bits (915), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 294/1035 (28%), Positives = 479/1035 (46%), Gaps = 103/1035 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S + + ++       A+AITD   L   +   Q + + G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSASELFERALRHGYKALAITDECTLAGIVRAWQASTSTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ I+                  P +VLLV    GY+ L  L++      + K+   
Sbjct: 65   VGSEMHIE----------------NGPKVVLLVENQTGYEALCRLIT--VARRRAKKGEY 106

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              L    E   +GL+ L         +A   +   + E+        F +RL++ +  HR
Sbjct: 107  RLLREDFEPAPDGLLALWLPDLDGDAQACLADGRWLCER--------FAERLWLGVGLHR 158

Query: 191  GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            G D   R + ++ LA +  +P VA+ +    +       D + A+ H T V++       
Sbjct: 159  GPDDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEAGHLLFA 218

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + +L+    +   + D    L  +V IARRC+F L                D++ E  
Sbjct: 219  NGERHLRPLDVLSEHYPDW--LLAESVRIARRCTFDL---------------GDLKYEYP 261

Query: 309  NELRNKA---VAGLEVRLAQGAIAK--GYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +EL  K     + L     +G   +  G      R +++ EL +IA  KF  YFL V D 
Sbjct: 262  HELVPKGQTPTSWLRELTERGVRRRWPGGLTPATRAQVEKELALIAEKKFDSYFLTVHDI 321

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF 
Sbjct: 322  VEFARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISRERNEPPDIDVDFE 380

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L +      
Sbjct: 381  HDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPDQINALAE------ 434

Query: 484  AHPVSLQAIADDSRFREARL-AD-PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            A      ++    R RE    AD P + R+L ++ +L G  RH S H  G VI + PL  
Sbjct: 435  AFSRWSDSLPSPERLREYGFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLDT 494

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSL 600
            LVP+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ 
Sbjct: 495  LVPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGQRWTLAT 554

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P DD +TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +
Sbjct: 555  LPGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMV 614

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R+NG+E  V+  P ++ + K T GV ++QEQVM++A L + Y+  EAD LRRAM 
Sbjct: 615  HPYLRRRNGEEA-VTYPPKLESVFKRTLGVPLFQEQVMEVAILAADYTPGEADELRRAMA 673

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K    ++  +ER   G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + 
Sbjct: 674  AWKRHGGLEPHRERLRKGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASC 733

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GD 832
            W+K H P  F  A +           +  QDAR+ +I+I P  V     D  +      D
Sbjct: 734  WLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHSD 793

Query: 833  NR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            +     I   L  ++G     A  I  A A +PF    D   R +   L+ R  E+L  +
Sbjct: 794  STRNLAIRLGLRMVRGFREEDALRIEAARAKRPFVDATDLTLRAE---LDSRAAEALADS 850

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA           L+ L   +  A+W E         +F  +  +   ++ L   +V   
Sbjct: 851  GA-----------LRGLIGHRHRARW-EVAGVEAQRPLF-DDLPSEETQVILPLPTVAED 897

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR---LAAMVVSKQ 1005
             V    +   LG     HPL + +   R++  K +  S   +   N R   +A +V+ +Q
Sbjct: 898  LV---ADYTTLGTTLGPHPLALLR---RQLAAKRFRSSQDLLHLENDRTLSVAGLVIGRQ 951

Query: 1006 QKKTRKGSRIGWVTF 1020
            +  T  G     VTF
Sbjct: 952  RPGTASG-----VTF 961


>gi|229897023|ref|ZP_04512182.1| DNA polymerase III alpha subunit [Yersinia pestis Pestoides A]
 gi|229700059|gb|EEO88099.1| DNA polymerase III alpha subunit [Yersinia pestis Pestoides A]
          Length = 905

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 273/924 (29%), Positives = 441/924 (47%), Gaps = 148/924 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           L V + +SL E AL   N + KIA D    A+   D+ N+ S +   Q+A    +  I G
Sbjct: 4   LMVRTDFSLGESALKAENAV-KIARDAGYTAVISADSMNIASVIPL-QRAAGDDMAVICG 61

Query: 73  CQLDI----DMQDNLKMTNQGKTPFPTVP-----SIVLLVSTAEGYQRLIELVSRMYLLD 123
            +L++      +   ++  + +    ++          L+   +GY+ + EL++     +
Sbjct: 62  VKLNVVDDPTYEHRARLAKESERCMESLVRDRSYCFTALIKNEQGYRDVCELMTLANKRE 121

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG---- 179
           Q     R+ L  L     +G I+L     G            V ++R   F K+ G    
Sbjct: 122 QFYFVPRLALDQLAAAYAKGNIILLTSDIG-----------SVFQRR--DFAKIIGTLVT 168

Query: 180 ----DRLYVNLQRHRG--YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
               D  Y  +  H    YD+    + +++A   ++  VA   + + + +D +  D+   
Sbjct: 169 AGGRDNFYSVVYPHPTPFYDQI-NVRAMKVASALKIEPVAFYPAYYEAVDDADIKDIAHM 227

Query: 234 VAHSTVVSQKDRPRVTP--DHYLKNRSEMV------SIFSDLP--EALENTVE--IARRC 281
           V ++  + Q  R R+    D+ +  R  ++      S+  D+P   A+ +T +  I   C
Sbjct: 228 VTNNIKIDQPHRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEAC 287

Query: 282 SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR--- 338
           ++      P LP+  +        +E   L   AVAGL  RL          A ++R   
Sbjct: 288 TWRWHELPPALPKMAD--------DEPATLMKLAVAGLRKRLTTKEFGYTPPASEHRVYV 339

Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            RL +E++ + R+ F GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+
Sbjct: 340 DRLKYEMDTLTRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPI 399

Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
           R  LLFERF+NP+R+ +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +AL
Sbjct: 400 RHGLLFERFINPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASAL 459

Query: 459 RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS-RFREARLADPSVDRL------ 511
           RD  R   +  +           D A     + + DDS    E R    S+D+       
Sbjct: 460 RDTARIYGVDAA-----------DMAVSKEFKNLEDDSLSLEELREQLASLDKYATKYPE 508

Query: 512 -LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
             + + KL+ L R    HAAG+++   PL +  P+  ++R +     F+ ++ E  GLIK
Sbjct: 509 AFKAACKLQSLMRGFGRHAAGMIVAGVPLVERTPV--ELRGNARCIAFDKRYCEAMGLIK 566

Query: 571 FDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
            D LGL TL LL  +  ++ +  G  ++L  IP DD +         T G+FQLES  MR
Sbjct: 567 LDVLGLATLDLLDSAKRYIKESTGEDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGPMR 626

Query: 630 QALE----GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK 683
           + L+    G++P   + ++A  +L+RPGPI + ++  Y +   G     S+HP++D +  
Sbjct: 627 KLLKDLGGGIEPMSFKTVVATTALFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDELTA 686

Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA------- 736
           ET GVI+YQEQ M   +LL+G++++EAD +R+A+GKK  E+M    E+F+  A       
Sbjct: 687 ETNGVILYQEQTMNATRLLAGFTMAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWIDV 746

Query: 737 ---------------------------------------------SKNGISKTIAVNIFE 751
                                                        S+ G+S+T A  I++
Sbjct: 747 EMEDGTTQRIHRAEHFKCEDGALRTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEIWD 806

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
              K   Y FNKSH  AY++ISYQ+ W+KTHYP EF AA++T+  ++  K +   +DA  
Sbjct: 807 AFEKNGAYQFNKSHPVAYSLISYQSMWLKTHYPAEFFAAALTILGED--KHQGLVKDALT 864

Query: 812 FNIQIMPPSVNTPCVDFKVGDNRI 835
           + I ++PP VN       V  NRI
Sbjct: 865 YGIHVLPPDVN-------VSSNRI 881


>gi|330875010|gb|EGH09159.1| error-prone DNA polymerase [Pseudomonas syringae pv. morsprunorum
            str. M302280PT]
          Length = 1031

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 290/1042 (27%), Positives = 475/1042 (45%), Gaps = 128/1042 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + D+       A+AITD   L   +   Q +   G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFDRALRHGYAALAITDECTLAGIVRAWQASKDTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-----------RM 119
            +G ++ ++                  P IVLLV +  GYQ L  L++           R+
Sbjct: 65   VGSEMHLE----------------NGPKIVLLVESLTGYQALCTLITVARRRAKKGEYRL 108

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
               D       +   WL +I  +    L  G+                       ++ F 
Sbjct: 109  LREDFDHLPDGLLAIWLADIEGDAQACLAQGN---------------------WLRERFA 147

Query: 180  DRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +RL++ ++ HRG D   R + ++ LA +  +P VA+ +    +       D + A+ H T
Sbjct: 148  ERLWLGVELHRGADDEQRLADLLALAQSLAIPAVASGDVHMHARGRRALQDTITAIRHHT 207

Query: 239  VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI---LQVHAP--IL 292
             V++         + +L++   +   + D    L  TV IARRC+F    LQ   P  ++
Sbjct: 208  TVAEAGHLLFANGERHLRSLDALAEHYPDW--LLAETVRIARRCTFTFDQLQYEYPHELV 265

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P+  +     +++  E  +R +   GL V                R +++ EL +I   K
Sbjct: 266  PKG-QTATSWLRELTERGIRRRWPKGLSV--------------AARAQVEKELALITEKK 310

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F  YFL V D +++A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R
Sbjct: 311  FDSYFLTVHDIVEFARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISRER 369

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
               PD D+DF  DRR+EVI+Y+  +YG  R A      +     ALRDV + L +P  Q+
Sbjct: 370  DEPPDIDVDFEHDRREEVIQYIFRRYGRGRTALTAVASTYHGSGALRDVAKVLGLPPDQI 429

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAA 530
            + L        A      A+    R RE       P + R+L ++ +L G  RH S H  
Sbjct: 430  NALAD------AFSRWSDALPSAERLREYGFDAETPILKRVLTLTGELIGFPRHLSQHPG 483

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G VI + PL  LVP+     ++  + Q++   ++  GL+K D L L  L+ L+++ D + 
Sbjct: 484  GFVISEHPLDTLVPVENAAMAERTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVH 543

Query: 591  -QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
              RG +  L+ +P DD  TY +++   T+G+FQ+ES      L  ++P+   D++  V++
Sbjct: 544  LHRGKQWTLASLPSDDRPTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAI 603

Query: 650  YRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             RPGPI  D +  Y  R+NG+E  V+  P +  + + T GV ++QEQVM++A + + Y+ 
Sbjct: 604  VRPGPIQGDMVHPYLRRRNGEEA-VTYPPKLKSVFERTLGVPLFQEQVMEVAIIAADYTP 662

Query: 708  SEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             EAD LRRAM   K    +D  +ER  +G   NG     A  IFE +  F  YGF +SHA
Sbjct: 663  GEADQLRRAMAAWKRHGGLDPHRERLRTGMLANGYEADFADRIFEQIKGFGSYGFPESHA 722

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A++A+++Y + W+K H P  F  A +           +  QDAR+ +I+I P  V     
Sbjct: 723  ASFALLTYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSHW 782

Query: 827  DFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            D  +          +  I   L  ++      A  I  A A +PF    D   R     L
Sbjct: 783  DCTLEPLDHPDSTRNLAIRLGLRMLRSFREEDALRIEAARAKRPFADATDLTQRA---GL 839

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW----VEKNRTNKHENIFAHEKGT 933
            + R  E+L  +GA           L+ L   +  A+W    VE  R    +++ + E   
Sbjct: 840  DSRAAEALADSGA-----------LRGLIGHRHRARWEVAGVEAQRP-LFDDLTSEEV-- 885

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--VATIR 991
               ++TL   +V    V    +   LG     HPL + +   R++  K +  S  + T+ 
Sbjct: 886  ---QVTLPLPTVAEDLV---ADYATLGTTLGPHPLALLR---RQLAAKRFRSSQDLLTLE 936

Query: 992  GN-NIRLAAMVVSKQQKKTRKG 1012
             N  + +A +V+ +Q+  T  G
Sbjct: 937  NNRTLSVAGLVIGRQRPGTASG 958


>gi|237799621|ref|ZP_04588082.1| error-prone DNA polymerase [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331022476|gb|EGI02533.1| error-prone DNA polymerase [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 869

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 264/913 (28%), Positives = 429/913 (46%), Gaps = 90/913 (9%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S  +  L   S++S   GA S   + ++       A+AITD   L   +   Q +   G+
Sbjct: 2   STDYAELHCLSNFSFQRGASSARELFERALRHGYTALAITDECTLAGIVRAWQASKDTGV 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS------RMYL 121
             I+G ++ I+                  P +VLLV    GY+ L +L++      R   
Sbjct: 62  PLIVGSEMHIE----------------NGPKVVLLVENKAGYEALCKLITVARRRARKGE 105

Query: 122 LDQGKQSVRICLS-----WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
               ++ V + L      WL +IG +    L+ G+                       ++
Sbjct: 106 YRLLREDVEVSLDGLLAIWLPDIGDDAQACLSQGN---------------------WLRE 144

Query: 177 LFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           LF +RL++ ++ HRG D   R + ++ LA    +P VA+ +    +       D + A+ 
Sbjct: 145 LFAERLWLGVELHRGPDDDQRLADLLALAQALGIPAVASGDVHMHARGRRALQDTMTAIR 204

Query: 236 HSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-QVHAPILP 293
           H T V++         + +L++   +   + D    L  +  IARRC+F L Q+      
Sbjct: 205 HHTTVAEAGHLLFANGERHLRSLDTLAEHYPDW--LLAESARIARRCTFDLDQLKYEYPH 262

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             + K      +   + LR     G+  R   G           R +++ EL +I   KF
Sbjct: 263 ELVPK-----GQTSSSWLRELTERGIRRRWPNGLSTVA------RAQVEKELALIKEKKF 311

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             YFL V D +++A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R 
Sbjct: 312 DSYFLTVHDIVEFARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISRERD 370

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
             PD D+DF  DRR+EVI+YV  +YG  R A      +     A+RDV + L +P  Q++
Sbjct: 371 EPPDIDVDFEHDRREEVIQYVFRRYGRGRAALTAVASTYHGSGAVRDVAKVLGLPPDQIN 430

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAG 531
            L +      A      ++    R RE       P + R+L ++ +L G  RH S H  G
Sbjct: 431 TLAE------AFSRWSDSLPSPERLREYGFNAETPVLKRVLTLTGELIGFPRHLSQHPGG 484

Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA- 590
            VI + PL  LVP+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +  
Sbjct: 485 FVISEHPLDTLVPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHL 544

Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            RG +  L+ +P DD +TY +++   T+G+FQ+ES      L  ++P+   D++  V++ 
Sbjct: 545 HRGKRWTLADLPGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIV 604

Query: 651 RPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
           RPGPI  D +  Y  R+NG+E  V+  P+++ + K T GV ++QEQVM++A + + Y+  
Sbjct: 605 RPGPIQGDMVHPYLRRRNGEEA-VTYPPMLESVFKRTLGVPLFQEQVMEVAIIAADYTPG 663

Query: 709 EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
           EAD LRRAM   K    +D  +ER  +G  KNG     A  IFE +  F  YGF +SHAA
Sbjct: 664 EADQLRRAMAAWKRHGGLDPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAA 723

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
           ++A+++Y + W+K H P  F  A +           +  QDAR+ +I+I P  V     D
Sbjct: 724 SFALLTYASCWLKCHEPAAFACALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSHWD 783

Query: 828 F---------KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                     +  +  I   L  ++      A  I  A + +PF    D   R     L+
Sbjct: 784 CSLEPVEHPDRTRNLAIRLGLRMLRSFREDDALRIEAARSKRPFTDATDLAQRA---GLD 840

Query: 879 RRVLESLVFAGAL 891
            R  E+L  +GAL
Sbjct: 841 SRAAEALADSGAL 853


>gi|66045759|ref|YP_235600.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae B728a]
 gi|75502059|sp|Q4ZTG0|DNAE2_PSEU2 RecName: Full=Error-prone DNA polymerase
 gi|63256466|gb|AAY37562.1| DNA polymerase III alpha subunit [Pseudomonas syringae pv. syringae
            B728a]
          Length = 1031

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 290/1039 (27%), Positives = 475/1039 (45%), Gaps = 122/1039 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + ++       A+AITD   L   +   Q + + G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFERALRHGYKALAITDECTLAGIVRAWQASKSTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ I+                  P +VLLV    GY+ L +L++ +     GK   R
Sbjct: 65   VGSEMHIE----------------NGPKVVLLVENQAGYEALCKLIT-VARRRAGKGEYR 107

Query: 131  ICLS------------WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
            +               WL ++       L GG                        ++ F
Sbjct: 108  VLREDFEPAPDGLLALWLPDLDGNAQACLAGGR---------------------WLRERF 146

Query: 179  GDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +RL++ +  HRG D   R + ++ LA +  +P VA+ +    +       D + A+ H 
Sbjct: 147  AERLWLGVGLHRGPDDEQRLADLLALAQSLGVPAVASGDVHMHARGRRALQDTMTAIRHH 206

Query: 238  TVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
            T V++         + +L+    +   + D    L  +V IARRC+F L           
Sbjct: 207  TTVAEAGHLLFANGERHLRPLDALSEHYPDW--LLAESVRIARRCTFDL----------- 253

Query: 297  EKECDDIQKEEENELRNK---AVAGLEVRLAQGAIAK--GYHAQDYRQRLDFELNVIARM 351
                 D++ E  +EL  K   + + L     +G   +  G      R +++ EL +IA  
Sbjct: 254  ----GDLKYEYPHELVPKGQTSTSWLRELTERGVRRRWPGGLTPATRAQVEKELALIAEK 309

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            KF  YFL V D +++A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +
Sbjct: 310  KFDSYFLTVHDIVEFARSQHI-LCQGRGSAANSAVCYALGITELNPEQSNLLFERFISRE 368

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+DF  DRR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q
Sbjct: 369  RNEPPDIDVDFEHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPEQ 428

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARL-AD-PSVDRLLEISQKLEGLYRHASTHA 529
            ++ L +      A      ++    R RE    AD P + R+L ++ +L G  RH S H 
Sbjct: 429  INALAE------AFSRWSDSLPSPERLREYGFDADTPILKRVLALTGELIGFPRHLSQHP 482

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G VI + PL  LVP+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +
Sbjct: 483  GGFVISEHPLETLVPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLV 542

Query: 590  A-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
               RG +  L+ +P DD +TY +++   T+G+FQ+ES      L  ++P+   D++  V+
Sbjct: 543  HLHRGQRWTLATLPGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVA 602

Query: 649  LYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            + RPGPI  D +  Y  R+NG+E  V+  P ++ + K T GV ++QEQVM++A L + Y+
Sbjct: 603  IVRPGPIQGDMVHPYLRRRNGEED-VTYPPKLESVFKRTLGVPLFQEQVMEVAILAADYT 661

Query: 707  LSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
              EAD LRRAM   K    ++  +ER  +G  KNG     A  IFE +  F  YGF +SH
Sbjct: 662  PGEADELRRAMAAWKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESH 721

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AA++A+++Y + W+K H P  F  A +           +  QDAR+ +I+I P  V    
Sbjct: 722  AASFALLTYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSD 781

Query: 826  VDF---------KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
             D          +  +  I   L  ++      A  I  A A +PF    D   R +   
Sbjct: 782  WDCSLEPLDHPDRTRNLAIRLGLRMVRSFREEDALRIEVARAKRPFVDATDLTLRAE--- 838

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            L+ R  E+L  +GA           L+ L   +  A+W E         +F  +  +   
Sbjct: 839  LDARAAEALADSGA-----------LRGLIGHRHRARW-EVAGVEAQRPLF-DDLPSEET 885

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            ++TL   +V    V    +   LG     HPL + +   R++  K +  S   +   N R
Sbjct: 886  QVTLPLPTVAEDLV---ADYTTLGTTLGPHPLALLR---RQLAAKRFRSSQDLLHLENDR 939

Query: 997  ---LAAMVVSKQQKKTRKG 1012
               +A +V+ +Q+  T  G
Sbjct: 940  TLSVAGLVIGRQRPGTASG 958


>gi|330503437|ref|YP_004380306.1| error-prone DNA polymerase [Pseudomonas mendocina NK-01]
 gi|328917723|gb|AEB58554.1| error-prone DNA polymerase [Pseudomonas mendocina NK-01]
          Length = 1022

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 280/1019 (27%), Positives = 468/1019 (45%), Gaps = 90/1019 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+++   GA S   + ++ A     A+AITD   L   +   + +   G++ I
Sbjct: 4    YAELHCLSNFTFQRGASSAQELFERAARLGYRALAITDECTLAGIVRAWEASKKTGVKLI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ I+                  P +VLL    EGYQ L  L++R       K + R
Sbjct: 64   VGSEVQIEKG----------------PKLVLLAENLEGYQALCGLITRARR-RAAKGTYR 106

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +          E  ++       P+D       S+     L   + +F +RL++ ++ HR
Sbjct: 107  LL--------HEDFVV-------PLDGLLAIWLSEGEATALPWLRSVFPERLWLGVELHR 151

Query: 191  GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            G D   R  ++++LA  H+LP VA  +    +       D + A+ H   V++       
Sbjct: 152  GADDSARLQRLLELAAVHDLPTVACGDVHMHARGRRALQDCMTAIRHHLPVAEAGAHLFA 211

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKECDDIQK 305
              + +L+   E+  ++   PE L  ++ IA RCSF L   + H P        E      
Sbjct: 212  NGERHLRRLEELGELYP--PELLAQSLRIAERCSFDLDELEYHYP-------HELVPAGH 262

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +  + LR     G   R  +G  A        R +++ EL +IA +++  YFL V D ++
Sbjct: 263  DPTSWLRVLVERGAAERWREGVPAAA------RTQIEHELALIAELEYESYFLTVHDIVR 316

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A++ +I +  GRGS A S   +AL IT++DP    LLFERFL+ +R   PD D+DF  +
Sbjct: 317  FAREQHI-LCQGRGSAANSSVCFALGITELDPTESRLLFERFLSRERNEPPDIDVDFEHE 375

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL---CKLIPND 482
            RR+EVI+YV  +YG  R A      +     A+RDV +AL +P  QV+ L   C    + 
Sbjct: 376  RREEVIQYVFRRYGRTRAALTAVVNTYHGAGAIRDVAKALGLPPDQVNALADCCGRWSSG 435

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P  P  L     D +       +P + R+L ++ +L G  RH S H  G VI +  L  L
Sbjct: 436  PPTPERLLEAGFDPQ-------NPLLRRVLILTGELIGFPRHLSQHPGGFVISEHALDTL 488

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+     ++  V Q++   +++ GL+K D L L  L+ L++    + + RG +  L+ +
Sbjct: 489  VPVENATMTERTVIQWDKDDLDRVGLLKVDVLALGMLSALRRCFGLIERYRGTQWTLATL 548

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY +++   T+G FQ+ES      L  ++P+   D++  V++ RPGPI  D + 
Sbjct: 549  PKEDPATYAMISRADTIGAFQIESRAQMAMLPRLRPNTFYDLVIQVAIVRPGPIQGDMVH 608

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+N +E I      + P+ + T GV ++QEQVM++A + + Y+  EAD LRR+M  
Sbjct: 609  PYLRRRNEEEAIDYPSDELKPVFERTLGVPLFQEQVMELAIVAAEYTPGEADELRRSMAA 668

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    ++  ++R  S   + G ++     IF  +  F  YGF +SHAA++A+++Y + W
Sbjct: 669  WKRHGGLEPHRQRLTSRMLEKGYTQEFTERIFRQIEGFGSYGFPESHAASFALLAYASCW 728

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDN 833
            +K H P  +  A +           +  QDAR+ ++++ P  V     D  +     G+ 
Sbjct: 729  LKCHEPAAYACALVNSWPMGFYSPDQVLQDARRHDVEVRPVDVRYSDWDCSLEPNEHGEP 788

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I   L  I+G+    AR I +A     F  +ED   R    +L+    E L  AGAL  
Sbjct: 789  AIRLGLRMIRGMREDDARRIEQARQSGSFRDVEDLSVRA---RLDASARERLADAGALAG 845

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R Q           A+W       +   +FA         ++L   S     +   
Sbjct: 846  LAGHRHQ-----------ARWAVAG-VEEQLPLFAGVSAPNEASLSLPAPSQGEDLL--- 890

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             +   LG     HPL + + +LR    +   E  A   G  + +A +V+ +Q+ +T  G
Sbjct: 891  TDYATLGTTLGPHPLALLRQVLRARRCRSSHELQAVEHGRPVSVAGLVIGRQRPQTASG 949


>gi|319777594|ref|YP_004137245.1| DNA polymerase iii alpha subunit [Mycoplasma fermentans M64]
 gi|238810015|dbj|BAH69805.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|318038669|gb|ADV34868.1| DNA polymerase III alpha subunit [Mycoplasma fermentans M64]
          Length = 967

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 215/586 (36%), Positives = 331/586 (56%), Gaps = 32/586 (5%)

Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
           D+ +RL++E NVI ++ +  YFLI+ D + WAK   I +GPGRGS AGS+ +Y L IT+I
Sbjct: 250 DWNKRLEYEFNVIKKLGYINYFLIIQDLVNWAKSQKIAIGPGRGSAAGSLVSYLLNITEI 309

Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
           +PLR++LLFERFLNPDR+S PD DID   DRR EV  Y+Q KYG ++   I TF ++ AK
Sbjct: 310 NPLRYNLLFERFLNPDRVSWPDIDIDIQDDRRFEVFEYLQKKYGVDKTGLISTFQTIGAK 369

Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
            A+RD+GR + +    ++R+ K I +D        A  +D  F+      P    L + +
Sbjct: 370 MAIRDMGRVMGISLIDINRISKTIKSDNL----TDAYKNDIDFKIEMDNYP---ELYKHA 422

Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            K+EGL R  S HAAG +I    L   VP+      +    Q  M +IE  GL+K D LG
Sbjct: 423 LKIEGLPRQQSFHAAGFIIAKDKLFNYVPVCLSNLDNYQQVQVPMNYIESYGLLKIDLLG 482

Query: 576 LKTLT---LLQKSL------DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
           L+TLT   L++KSL      D+L +   ++       +D +T  +L    T GIFQLES 
Sbjct: 483 LRTLTEIQLIEKSLEENQKFDYLVKNDPQI------LNDPKTLTMLNLGFTEGIFQLESP 536

Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
           GM++ ++ +  +  +D+ A++SL+RPGP+D I  Y   K  ++ I  IHP  D ++  T 
Sbjct: 537 GMKKTIQKVVLNSFDDLYAIISLFRPGPMDFINDYATNKKNQKLIKKIHPDYDKVVANTY 596

Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
           G+I+YQEQ+MQIAQ + G + ++AD+LR+A+ KK + ++ K +  F   A K GI++ I 
Sbjct: 597 GIIVYQEQIMQIAQSIGGMTFAQADLLRKAISKKSEVDIKKYRSIFFENAIKKGINEKII 656

Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
             I+  + KF  YGFNKSHA +YA ++ + ++ K  Y   F ++ +T        I K+ 
Sbjct: 657 NAIYNNIEKFGLYGFNKSHAVSYAYLTMKMSYYKARYANLFYSSLITNAAGAQATINKYV 716

Query: 807 QDARQFNIQIMPPSV---NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPF 862
            + ++ N  +  P++   +  C+   V ++ IY     IKG G      I+ + + + PF
Sbjct: 717 AEIKKLNFPVYSPNILHSSNKCI---VTNDGIYLPFEMIKGFGAEGVNKIVADLNENGPF 773

Query: 863 D-SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             +L D   R+    +    +E L+ A A   FG+  M+ + S DN
Sbjct: 774 QKNLIDTMLRLRFAGIKDAAMEILIKANAFRDFGH--MKYILSCDN 817



 Score = 42.0 bits (97), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 17/106 (16%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +V+L   S Y+ L+  + +++++        PA+ ++D NN+F    F +      I+ I
Sbjct: 4   YVNLYNTSEYTFLDSLIRIDDLVRLSKEHNLPAVVLSDRNNMFGLGAFMEACLKYDIKGI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           IG  LD+   DN +               ++L    +GYQ++ +L+
Sbjct: 64  IGVDLDV---DNYRF--------------IVLAKNYQGYQKINQLI 92


>gi|71151844|sp|Q8PN74|DNAE2_XANAC RecName: Full=Error-prone DNA polymerase
          Length = 1083

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 283/1056 (26%), Positives = 473/1056 (44%), Gaps = 127/1056 (12%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q  +  P++  L   S +S L GA S   +  +       A+AITD  +L   +   + 
Sbjct: 39   AQQADGLPAYAELHCLSDFSFLRGASSAEQLFARAQQCGYSALAITDECSLAGIVRGLEA 98

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-- 119
            + A G++ I+G +    + D  +               VLLV  A GY +L  L++    
Sbjct: 99   SRATGVRLIVGSEFT--LVDGTR--------------FVLLVENAHGYPQLCGLITTARR 142

Query: 120  ------YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
                  Y LD+ +   +                       P   A +   +Q   ++   
Sbjct: 143  AASKGAYRLDRAEVQAQF------------------RDVAPGVFALWLPGAQPQAEQGAW 184

Query: 174  FKKLFGDRLYVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
             +++FG+R ++ ++ HR  D      V+Q LA    +  +A+ +       +    D L 
Sbjct: 185  LQQVFGERAFLAVELHREQDDVARLHVLQALAQQLGMTALASGDVHMAQRRERIVQDTLT 244

Query: 233  AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
            A+ H+  +++         + +L+ R  + +I+ D    L+ TVE+A+RC+F +   +  
Sbjct: 245  AIRHTLPLAECGAHLFRNGERHLRTRRALGNIYPD--ALLQATVELAQRCTFDISKISYT 302

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             PR +  E         + LR    AG+  R   G  AK       R+ ++ EL +IA  
Sbjct: 303  YPRELVPE----GHTPTSYLRQLTEAGIRRRWPGGITAK------VREDIEKELALIALK 352

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            K+  +FL V D +++A++ NI +  GRGS A S   YAL IT ++P    LL  RFL+  
Sbjct: 353  KYEAFFLTVQDVVRFAREQNI-LCQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEK 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+DF  +RR+EV++YV +KYG ER A   T    + K+A+RDV +A  +P  Q
Sbjct: 412  RDEPPDIDVDFEHERREEVLQYVYSKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQ 471

Query: 472  VDRLCKLIP-NDPAHPVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTH 528
            +  L       +   P+       D R  EA   LA+P ++++L +++ L    RH S H
Sbjct: 472  IALLANCYGWGNGETPM-------DQRIEEAGFDLANPLINKILAVTEHLRDHPRHLSQH 524

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
              G VI D PLS LVP+     ++  + Q++   +E   L+K D L L  LT ++K+LD 
Sbjct: 525  VGGFVISDEPLSLLVPVENAAMANRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDL 584

Query: 589  L-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            +   RG    ++ +P  D  TY ++    T+G+FQ+ES      L  ++P    D++  V
Sbjct: 585  VRGHRGRNYSIATLPGGDAPTYKMIQRADTVGVFQIESRAQMAMLPRLKPAAFYDLVIEV 644

Query: 648  SLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            ++ RPGPI  D +  Y  R+ G+E++    P ++ +LK T GV ++QEQVM++    + Y
Sbjct: 645  AIVRPGPIQGDMVHPYLRRRQGREEVNYPSPAVEDILKPTLGVPLFQEQVMELLMHAADY 704

Query: 706  SLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            S  EAD LRR+M   +   +M++ + R        G + +    IFE +  F  YGF +S
Sbjct: 705  SEDEADNLRRSMAAWRRGGDMEQHRTRVRERMQGKGYASSFIDQIFEQIKGFGSYGFPQS 764

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-----IQIMPP 819
            HAA++A + Y + W+K H P  F    +  +        +  QDAR+ +     ++++P 
Sbjct: 765  HAASFAKLVYASCWLKRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPV 824

Query: 820  SVNTPCVDFKVGDNRIYYSLA-------------AIKGVGTTTARHIMEASADKPFDSLE 866
             V     D  +   R + S A              + G+    A+ I+ A   + F  + 
Sbjct: 825  DVLHSDWDNTLVGGRPWRSAADPGEQPAIRLGMRQVAGLSQVVAQRIVAARTQRAFADIG 884

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            D C R     L+ +   +L  AGA           LQ +   +  A+W            
Sbjct: 885  DLCLRA---ALDEKARLALAEAGA-----------LQGMVGNRNAARWAMAG-------- 922

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQ---------RVLGFYFSGHPLDVYKPILRK 977
                      +  L   S E   V FE  +         R +G     HP+ + +P +R+
Sbjct: 923  -------VEARCPLLPGSPEERPVEFEAPRAGEEILADYRSVGLSLRQHPMALLRPQMRQ 975

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
              I G  E      G+ + +A +V  +Q+  T KG+
Sbjct: 976  RRILGLRELQGRRHGSGVHVAGLVTQRQRPATAKGT 1011


>gi|206599772|ref|YP_002241961.1| gp68 [Mycobacterium phage Gumball]
 gi|206282986|gb|ACI06440.1| gp66 [Mycobacterium phage Gumball]
          Length = 1100

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 287/960 (29%), Positives = 447/960 (46%), Gaps = 85/960 (8%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           K   FV L  HS++S  +G   +   + ++A     A+A+T+  NL S  +  +     G
Sbjct: 33  KPMKFVSLHTHSTFSYGDGYGPVKEHVQRVAELGMGALALTEHGNLSSHAQLEKACNEIG 92

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I+PI GC+L +      +  +Q            +L     G Q L  +V++ +     K
Sbjct: 93  IKPIFGCELYVAPPGENRKCHQ-----------TVLAMNEVGLQNLNRIVTKSW-----K 136

Query: 127 QSVRI-CLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT----------- 173
              R    SW + E   EGLI+L+G +   +        S   +KRL             
Sbjct: 137 NFYRWPTTSWKMLEEHNEGLIVLSGCADSVLSCTLLGGKS-YGDKRLTASKRDIARAAGL 195

Query: 174 ---FKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELP---LVATNNSLFLSEEDYEA 227
              ++++FGDR Y+  QR  G DR      + LA   EL    LV T +  +    D + 
Sbjct: 196 IGRYQEVFGDRYYLEAQRFPGLDRTCALNPL-LARLSELTGARLVGTADVHYPRGSDNDM 254

Query: 228 HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL----------PEALENTVEI 277
             +L A AH     +        D  L        I+ DL           EA+  +  I
Sbjct: 255 QKILHA-AHRGSTVEATEASWEYDILLTYPESDREIYMDLVGTGLTKAQAREAVLESGRI 313

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQ-KEEENELRNKAV-AGLEVRLAQGAIAKGYHAQ 335
           A RC+ IL  + PI      KE D  Q     NEL  K +  G   R+A     +  + Q
Sbjct: 314 AERCNVILPKNQPIRFPKPTKEVDGTQVPMSANELIRKWLNEGWHFRMATNPNMRK-NRQ 372

Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            Y+ R++ EL ++    F  YFL+++D ++WAK + IPVGP RGS A S+  Y L IT++
Sbjct: 373 AYKARVEHELGMMEEKDFLDYFLVLSDAVRWAKDHKIPVGPARGSAAASLVCYLLRITEV 432

Query: 396 DPLRFS-LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           DP+ F  +LFERF++P R  +PD D+DF  DRR EV RY++ KYG +RV  I  F   + 
Sbjct: 433 DPMLFPHMLFERFIDPTRTELPDVDLDFSDDRRIEVKRYLEEKYGADRVGNIGNFTRYRG 492

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
           K ++ DV R   +P  + + +  LI         +    +D+ F     A   ++R  E+
Sbjct: 493 KNSIDDVARVYNIPVWETEIVKNLIIERSGGDSRISDSLEDT-FNMFPKAAAVLERHPEL 551

Query: 515 SQ--KLEGLYRHASTHAAGIVIGDRPLSQLVPMY--RDVRSDLPVTQFNMKWIEKAGLIK 570
           +   +LEG YR    HAAGIVI + P++    +Y          V  ++ K  E  G++K
Sbjct: 552 ANAIRLEGNYRGMGVHAAGIVISNTPITDTCAVYERESAGKTTQVIAYDKKDGEYVGMLK 611

Query: 571 FDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
            DFLGL T+ ++  +LD +   G+ + DL  IP DD +           GIFQ E    R
Sbjct: 612 ADFLGLSTMGMIGIALDMI---GMDLEDLYRIPLDDQKVLEAFRRGDVTGIFQFEGRATR 668

Query: 630 QALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
                + PD  + +  + +L RPGP+       Y   K+G++     HP++D +   T G
Sbjct: 669 IVCSDVVPDHFQHLADINALSRPGPLFSGMTAAYCEVKHGRKTPERYHPILDNLTDWTYG 728

Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKN-GISKTI 745
            ++YQEQV+   + L G+ +SE   +R+ + +K+ E + + + + F   A +N G +   
Sbjct: 729 QVVYQEQVLSTIRELGGFPMSEVHSIRKIISQKLGEAQFEAKYKMFEDNACQNHGCTPEQ 788

Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
           A  I+  LA  A Y FN +H  +Y++++Y   W+K H+P  F AA   L   N EK+ K 
Sbjct: 789 AQKIWRFLATSATYSFNIAHCISYSMLAYWQMWIKQHHPTAFYAAQ--LRKVNDEKLYKL 846

Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-------- 856
            +DA + NI I+PPS+N     +    +  +      I GVG  T+  I+E         
Sbjct: 847 MRDAVRHNISILPPSINESMASWSAPMEGVVRAGFLQIPGVGPKTSEVIVEWRNQKIRKG 906

Query: 857 ----SADKPFDSLEDFCSRVDSKKLNRRVLESLV-FAGALDCFGYSRMQ-LLQSLDNIQK 910
               +A  P     D    ++ K +  + +E +V F  A D FG +R+Q L +SL  I K
Sbjct: 907 QKAIAASAPDLMWSDL---LEVKGIGPKSIEKIVAFCEAEDPFGLNRVQDLFKSLRRIIK 963


>gi|149276053|ref|ZP_01882198.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39]
 gi|149233481|gb|EDM38855.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39]
          Length = 1074

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 282/1024 (27%), Positives = 473/1024 (46%), Gaps = 84/1024 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  LQV +++S L GA     ++    A     IAITD N L   +          I  
Sbjct: 2    SYTELQVTTNFSFLRGASHPEEMVAHAYALGYKKIAITDHNTLAGVVRAHTATKGKEISI 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQS 128
            I  C+L+  + D               PS++   +    Y RL  L+S+  L  ++G   
Sbjct: 62   IPACRLN--LLDG--------------PSLLAYPTDMAAYTRLSALLSKGNLRAEKGDCH 105

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            +     +    G + +++       P +    F+     ++ L  +++  G+ LY+   R
Sbjct: 106  LYKTDVYEHAEGMKFIVI------PPQELNTLFDFDAAFKQDLTEYRQALGNSLYLAATR 159

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRP 246
             ++G D  +  ++ QL+    +P+ ATN+  +      E  DVL  V    T+ +   R 
Sbjct: 160  AYQGNDLKKMYRIAQLSADLHIPMAATNDVYYHDTSRRELQDVLTCVREKCTIHTAGFRL 219

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK   EM+ +F   PEA+ +  EIA  C F L     + P    +E     + 
Sbjct: 220  HKNAERHLKPIDEMLRLFRQYPEAIRHAQEIADACEFSLSTLKYVYP----EELTTDGRT 275

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + EL + A  G   R  +  I +   A      + +EL  +  M ++ YFL V D +++
Sbjct: 276  PQQELTHLAWEGANERY-ENNIPESISAA-----IRYELKFMEEMNYASYFLTVYDIVRF 329

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I +  GRGS A S   Y L IT +DP +F LLFERF++  R   PD D+DF  +R
Sbjct: 330  ARQQGI-LCQGRGSAANSTVCYCLGITAVDPTKFELLFERFISSARNEPPDIDVDFEHER 388

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+ NKYG +R A + T      K A+RDVG+A+ +    + RL   I       
Sbjct: 389  REEVIQYIYNKYGRDRAAIVATVTQQHKKGAIRDVGKAMGLSVDTISRLSSAI------- 441

Query: 487  VSLQAIADDSRFREARLA------DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                   +D   R++ L       DP + ++L+++ ++ G  R    H  G VI    L+
Sbjct: 442  ---WEFTEDWFERDSILEKGLNPDDPHLRKVLQLTGQMIGFPRQLGQHTGGFVITQGKLT 498

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
             L P+      +    ++N   I+  G +K D L L  LT ++K  D LA++  + DL+L
Sbjct: 499  DLCPILNARMDNRTNIEWNKDDIDALGFLKIDVLALGMLTCIRKCFD-LAKKHHQRDLTL 557

Query: 601  --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
              +P DD E Y +++   TLG+FQ+ES   +  L  ++P C  D++  V++ RPGPI  D
Sbjct: 558  ANVPQDDPEVYQMISHADTLGVFQIESRAQQSMLPRLRPKCFYDLVIEVAIVRPGPIQGD 617

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+NG+EK       +  +LK T GV ++QEQ M+IA + +G++ +EAD LRR+
Sbjct: 618  MVHPYLRRRNGEEKEEYPSEALREILKRTLGVPLFQEQAMKIAIVAAGFTPTEADELRRS 677

Query: 717  MGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M   K+K  +  QK++ I G   NG     A  IF+ L  F  YGF +SHAA++A++ Y 
Sbjct: 678  MATFKVKGMVSTQKKKLIEGMIANGYEAAFAERIFKQLEGFGSYGFPESHAASFALLVYV 737

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP----CVDFKVG 831
            ++W+K H P  F A  +        +  +   DA++  +++    VN       ++ K G
Sbjct: 738  SSWIKCHLPDVFAAGLLNSMPMGFYQPAQIVIDAKKHGVEVREADVNHSDWDNLLEEKSG 797

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            D + +      IKG+       +++A    P+ ++ + C       +++  LE L  A A
Sbjct: 798  DWHAMRLGFRQIKGLAEDEILALIQART-TPYKNIHELC----EAGVSQSTLEKLADADA 852

Query: 891  LDCFGYSRMQLLQSLDNIQK--YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
                G  R Q L  +  +Q    A +  ++  +K E        T  + +  +  S   S
Sbjct: 853  FRSMGLDRRQALWEVSALQDRPIALFQGQDSESKSEPQIELPLMTAGEHVVQDYASTSLS 912

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
                             HP+   +  LR + +    E      G  +++A +V+ +Q+  
Sbjct: 913  --------------LKAHPVSFVREQLRLLRVVSTGELSEIKDGTPLKVAGLVLVRQRPG 958

Query: 1009 TRKG 1012
            T KG
Sbjct: 959  TAKG 962


>gi|289763553|ref|ZP_06522931.1| DNA polymerase III alpha subunit dnaE2 (DNA nucleotidyltransferase)
           [Mycobacterium tuberculosis GM 1503]
 gi|289711059|gb|EFD75075.1| DNA polymerase III alpha subunit dnaE2 (DNA nucleotidyltransferase)
           [Mycobacterium tuberculosis GM 1503]
          Length = 861

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 217/641 (33%), Positives = 347/641 (54%), Gaps = 36/641 (5%)

Query: 268 PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
           P  +    E+  RC+F LQ+ AP LP F   +       E++ LR+  +AG   R     
Sbjct: 82  PRRVTAAAELGERCAFGLQLIAPRLPPFDVPD----GHTEDSWLRSLVMAGARERYGPPK 137

Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
            A   ++Q     ++ EL VIA+++F GYFL+V D  ++ + N+I +  GRGS A S   
Sbjct: 138 SAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDITRFCRDNDI-LCQGRGSAANSAVC 191

Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
           YAL +T +DP+   LLFERFL+P R   PD DID   D+R++VI+YV +KYG +  AQ+ 
Sbjct: 192 YALGVTAVDPVANELLFERFLSPARDGPPDIDIDIESDQREKVIQYVYHKYGRDYAAQVA 251

Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
              + + ++A+RD+ RAL     Q D   K + +           ADD         D  
Sbjct: 252 NVITYRGRSAVRDMARALGFSPGQQDAWSKQVSH-------WTGQADD--------VDGI 296

Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            +++++++ ++  L RH   H+ G+VI DRP++ + P+     ++  V Q++       G
Sbjct: 297 PEQVIDLATQIRNLPRHLGIHSGGMVICDRPIADVCPVEWARMANRSVLQWDKDDCAAIG 356

Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
           L+KFD LGL  L+ L  + D +A+ +G++VDL+ +   +   Y +L    ++G+FQ+ES 
Sbjct: 357 LVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLDLSEPAVYEMLARADSVGVFQVESR 416

Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE 684
                L  ++P    D++  V+L RPGPI    V  Y  R+NG + ++  HP + P L++
Sbjct: 417 AQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHPYIRRRNGVDPVIYEHPSMAPALRK 476

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGA-SKNGIS 742
           T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG K+  E M + + RF  G  + +G  
Sbjct: 477 TLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSKRSTERMRRLRGRFYDGMRALHGAP 536

Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
             +   I+E L  FA++GF +SHA ++A + + +AW K H+P  F AA +  +       
Sbjct: 537 DEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAWFKLHHPAAFCAALLRAQPMGFYSP 596

Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIYYSLAAIKGVGTTTARHIM-EASAD 859
           +    DAR+  + +  P VN              +   L A++ +G   A  ++ E +A+
Sbjct: 597 QSLVADARRHGVAVHGPCVNASLAHATCENAGTEVRLGLGAVRYLGAELAEKLVAERTAN 656

Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            PF SL D  SRV   +L+   +E+L  AGAL CFG SR +
Sbjct: 657 GPFTSLPDLTSRV---QLSVPQVEALATAGALGCFGMSRRE 694


>gi|206599684|ref|YP_002241563.1| gp65 [Mycobacterium phage Butterscotch]
 gi|206599860|ref|YP_002241480.1| gp66 [Mycobacterium phage Troll4]
 gi|206282866|gb|ACI06353.1| gp65 [Mycobacterium phage Butterscotch]
 gi|206283102|gb|ACI06527.1| gp66 [Mycobacterium phage Troll4]
          Length = 1100

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 287/960 (29%), Positives = 447/960 (46%), Gaps = 85/960 (8%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           K   FV L  HS++S  +G   +   + ++A     A+A+T+  NL S  +  +     G
Sbjct: 33  KPMKFVSLHTHSTFSYGDGYGPVKEHVQRVAELGMGALALTEHGNLSSHAQLEKACNEIG 92

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I+PI GC+L +      +  +Q            +L     G Q L  +V++ +     K
Sbjct: 93  IKPIFGCELYVAPPGENRKCHQ-----------TVLAMNEVGLQNLNRIVTKSW-----K 136

Query: 127 QSVRI-CLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT----------- 173
              R    SW + E   EGLI+L+G +   +        S   +KRL             
Sbjct: 137 NFYRWPTTSWKMLEEHNEGLIVLSGCADSVLSCTLLGGKS-YGDKRLTASKRDIARAAGL 195

Query: 174 ---FKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELP---LVATNNSLFLSEEDYEA 227
              ++++FGDR Y+  QR  G DR      + LA   EL    LV T +  +    D E 
Sbjct: 196 IGRYQEVFGDRYYLEAQRFPGLDRTCALNPL-LARLSELTGARLVGTADVHYPRGSDNEM 254

Query: 228 HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL----------PEALENTVEI 277
             +L A AH     +        D  L        I+ DL           EA+  +  I
Sbjct: 255 QKILHA-AHRGSTVEATEASWEYDILLTYPESDREIYMDLVGTGLTKAQAREAVLESGRI 313

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQ-KEEENELRNKAV-AGLEVRLAQGAIAKGYHAQ 335
           A RC+ IL  + PI      KE D  +     NEL  K +  G   R+A     +  + Q
Sbjct: 314 AERCNVILPKNQPIRFPKPTKEVDGTKVPMSANELIRKWLNEGWHFRMATNPNMRK-NRQ 372

Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            Y+ R++ EL ++    F  YFL+++D ++WAK + IPVGP RGS A S+  Y L IT++
Sbjct: 373 AYKARVEHELGMMEEKDFLDYFLVLSDAVRWAKDHKIPVGPARGSAAASLVCYLLRITEV 432

Query: 396 DPLRFS-LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           DP+ F  +LFERF++P R  +PD D+DF  DRR EV RY++ KYG +RV  I  F   + 
Sbjct: 433 DPMLFPHMLFERFIDPTRTELPDVDLDFSDDRRIEVKRYLEEKYGADRVGNIGNFTRYRG 492

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
           K ++ DV R   +P  + + +  LI         +    +D+ F     A   ++R  E+
Sbjct: 493 KNSIDDVARVYNIPVWETEIVKNLIIERSGGDSRISDSLEDT-FNMFPKAAAVLERHPEL 551

Query: 515 SQ--KLEGLYRHASTHAAGIVIGDRPLSQLVPMY--RDVRSDLPVTQFNMKWIEKAGLIK 570
           +   +LEG YR    HAAGIVI + P++    +Y          V  ++ K  E  G++K
Sbjct: 552 ANAIRLEGNYRGMGVHAAGIVISNTPITDTCAVYERESAGKTTQVIAYDKKDGEYVGMLK 611

Query: 571 FDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
            DFLGL T+ ++  +LD +   G+ + DL  IP DD +           GIFQ E    R
Sbjct: 612 ADFLGLSTMGMIGIALDMI---GMDLEDLYRIPLDDQKVLEAFRRGDVTGIFQFEGRATR 668

Query: 630 QALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
                + PD  + +  + +L RPGP+       Y   K+G++     HP++D +   T G
Sbjct: 669 IVCSDVVPDHFQHLADINALSRPGPLFSGMTAAYCEVKHGRKTPERYHPILDNLTDWTYG 728

Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKN-GISKTI 745
            ++YQEQV+   + L G+ +SE   +R+ + +K+ E + + + + F   A +N G +   
Sbjct: 729 QVVYQEQVLSTIRELGGFPMSEVHSIRKIISQKLGEAQFEAKYKMFEDNACQNHGCTPEQ 788

Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
           A  I+  LA  A Y FN +H  +Y++++Y   W+K H+P  F AA   L   N EK+ K 
Sbjct: 789 AQKIWRFLATSATYSFNIAHCISYSMLAYWQMWIKQHHPTAFYAAQ--LRKVNDEKLYKL 846

Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-------- 856
            +DA + NI I+PPS+N     +    +  +      I GVG  T+  I+E         
Sbjct: 847 MRDAVRHNISILPPSINESMASWSAPMEGVVRAGFLQIPGVGPKTSEVIVEWRNQKIRKG 906

Query: 857 ----SADKPFDSLEDFCSRVDSKKLNRRVLESLV-FAGALDCFGYSRMQ-LLQSLDNIQK 910
               +A  P     D    ++ K +  + +E +V F  A D FG +R+Q L +SL  I K
Sbjct: 907 QKAIAASAPDLMWSDL---LEVKGIGPKSIEKIVAFCEAEDPFGLNRVQDLFKSLRRIIK 963


>gi|21241953|ref|NP_641535.1| DNA polymerase III subunit alpha [Xanthomonas axonopodis pv. citri
            str. 306]
 gi|21107345|gb|AAM36071.1| DNA polymerase III alpha chain [Xanthomonas axonopodis pv. citri str.
            306]
          Length = 1065

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 283/1056 (26%), Positives = 473/1056 (44%), Gaps = 127/1056 (12%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q  +  P++  L   S +S L GA S   +  +       A+AITD  +L   +   + 
Sbjct: 21   AQQADGLPAYAELHCLSDFSFLRGASSAEQLFARAQQCGYSALAITDECSLAGIVRGLEA 80

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-- 119
            + A G++ I+G +    + D  +               VLLV  A GY +L  L++    
Sbjct: 81   SRATGVRLIVGSEFT--LVDGTR--------------FVLLVENAHGYPQLCGLITTARR 124

Query: 120  ------YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
                  Y LD+ +   +                       P   A +   +Q   ++   
Sbjct: 125  AASKGAYRLDRAEVQAQF------------------RDVAPGVFALWLPGAQPQAEQGAW 166

Query: 174  FKKLFGDRLYVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
             +++FG+R ++ ++ HR  D      V+Q LA    +  +A+ +       +    D L 
Sbjct: 167  LQQVFGERAFLAVELHREQDDVARLHVLQALAQQLGMTALASGDVHMAQRRERIVQDTLT 226

Query: 233  AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
            A+ H+  +++         + +L+ R  + +I+ D    L+ TVE+A+RC+F +   +  
Sbjct: 227  AIRHTLPLAECGAHLFRNGERHLRTRRALGNIYPD--ALLQATVELAQRCTFDISKISYT 284

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             PR +  E         + LR    AG+  R   G  AK       R+ ++ EL +IA  
Sbjct: 285  YPRELVPE----GHTPTSYLRQLTEAGIRRRWPGGITAK------VREDIEKELALIALK 334

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            K+  +FL V D +++A++ NI +  GRGS A S   YAL IT ++P    LL  RFL+  
Sbjct: 335  KYEAFFLTVQDVVRFAREQNI-LCQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEK 393

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+DF  +RR+EV++YV +KYG ER A   T    + K+A+RDV +A  +P  Q
Sbjct: 394  RDEPPDIDVDFEHERREEVLQYVYSKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQ 453

Query: 472  VDRLCKLIP-NDPAHPVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTH 528
            +  L       +   P+       D R  EA   LA+P ++++L +++ L    RH S H
Sbjct: 454  IALLANCYGWGNGETPM-------DQRIEEAGFDLANPLINKILAVTEHLRDHPRHLSQH 506

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
              G VI D PLS LVP+     ++  + Q++   +E   L+K D L L  LT ++K+LD 
Sbjct: 507  VGGFVISDEPLSLLVPVENAAMANRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDL 566

Query: 589  L-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            +   RG    ++ +P  D  TY ++    T+G+FQ+ES      L  ++P    D++  V
Sbjct: 567  VRGHRGRNYSIATLPGGDAPTYKMIQRADTVGVFQIESRAQMAMLPRLKPAAFYDLVIEV 626

Query: 648  SLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            ++ RPGPI  D +  Y  R+ G+E++    P ++ +LK T GV ++QEQVM++    + Y
Sbjct: 627  AIVRPGPIQGDMVHPYLRRRQGREEVNYPSPAVEDILKPTLGVPLFQEQVMELLMHAADY 686

Query: 706  SLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            S  EAD LRR+M   +   +M++ + R        G + +    IFE +  F  YGF +S
Sbjct: 687  SEDEADNLRRSMAAWRRGGDMEQHRTRVRERMQGKGYASSFIDQIFEQIKGFGSYGFPQS 746

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-----IQIMPP 819
            HAA++A + Y + W+K H P  F    +  +        +  QDAR+ +     ++++P 
Sbjct: 747  HAASFAKLVYASCWLKRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPV 806

Query: 820  SVNTPCVDFKVGDNRIYYSLA-------------AIKGVGTTTARHIMEASADKPFDSLE 866
             V     D  +   R + S A              + G+    A+ I+ A   + F  + 
Sbjct: 807  DVLHSDWDNTLVGGRPWRSAADPGEQPAIRLGMRQVAGLSQVVAQRIVAARTQRAFADIG 866

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            D C R     L+ +   +L  AGA           LQ +   +  A+W            
Sbjct: 867  DLCLRA---ALDEKARLALAEAGA-----------LQGMVGNRNAARWAMAG-------- 904

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQ---------RVLGFYFSGHPLDVYKPILRK 977
                      +  L   S E   V FE  +         R +G     HP+ + +P +R+
Sbjct: 905  -------VEARCPLLPGSPEERPVEFEAPRAGEEILADYRSVGLSLRQHPMALLRPQMRQ 957

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
              I G  E      G+ + +A +V  +Q+  T KG+
Sbjct: 958  RRILGLRELQGRRHGSGVHVAGLVTQRQRPATAKGT 993


>gi|189043217|ref|YP_001936156.1| gp65 [Mycobacterium phage Adjutor]
 gi|188090868|gb|ACD49650.1| gp65 [Mycobacterium phage Adjutor]
          Length = 1100

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 287/960 (29%), Positives = 447/960 (46%), Gaps = 85/960 (8%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           K   FV L  HS++S  +G   +   + ++A     A+A+T+  NL S  +  +     G
Sbjct: 33  KPMKFVSLHTHSTFSYGDGYGPVKEHVQRVAELGMGALALTEHGNLSSHAQLEKACNEIG 92

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I+PI GC+L +      +  +Q            +L     G Q L  +V++ +     K
Sbjct: 93  IKPIFGCELYVAPPGENRKCHQ-----------TVLAMNEVGLQNLNRIVTKSW-----K 136

Query: 127 QSVRI-CLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT----------- 173
              R    SW + E   EGLI+L+G +   +        S   +KRL             
Sbjct: 137 NFYRWPTTSWKMLEEHNEGLIVLSGCADSVLSCTLLGGKS-YGDKRLTASKRDIARAAGL 195

Query: 174 ---FKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELP---LVATNNSLFLSEEDYEA 227
              ++++FGDR Y+  QR  G DR      + LA   EL    LV T +  +    D E 
Sbjct: 196 IGRYQEVFGDRYYLEAQRFPGLDRTCALNPL-LARLSELTGARLVGTADVHYPRGSDNEM 254

Query: 228 HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL----------PEALENTVEI 277
             +L A AH     +        D  L        I+ DL           EA+  +  I
Sbjct: 255 QKILHA-AHRGSTVEATEASWEYDILLTYPESDREIYMDLVGTGLTKAQAREAVLESGRI 313

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQ-KEEENELRNKAV-AGLEVRLAQGAIAKGYHAQ 335
           A RC+ IL  + PI      KE D  +     NEL  K +  G   R+A     +  + Q
Sbjct: 314 AERCNVILPKNQPIRFPKPTKEVDGTKVPMSANELIRKWLNEGWHFRMATNPNMRK-NRQ 372

Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            Y+ R++ EL ++    F  YFL+++D ++WAK + IPVGP RGS A S+  Y L IT++
Sbjct: 373 AYKARVEHELGMMEEKDFLDYFLVLSDAVRWAKDHKIPVGPARGSAAASLVCYLLRITEV 432

Query: 396 DPLRFS-LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           DP+ F  +LFERF++P R  +PD D+DF  DRR EV RY++ KYG +RV  I  F   + 
Sbjct: 433 DPMLFPHMLFERFIDPTRTELPDVDLDFSDDRRIEVKRYLEEKYGADRVGNIGNFTRYRG 492

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
           K ++ DV R   +P  + + +  LI         +    +D+ F     A   ++R  E+
Sbjct: 493 KNSIDDVARVYNIPVWETEIVKNLIIERSGGDSRISDSLEDT-FNMFPKAAAVLERHPEL 551

Query: 515 SQ--KLEGLYRHASTHAAGIVIGDRPLSQLVPMY--RDVRSDLPVTQFNMKWIEKAGLIK 570
           +   +LEG YR    HAAGIVI + P++    +Y          V  ++ K  E  G++K
Sbjct: 552 ANAIRLEGNYRGMGVHAAGIVISNTPITDTCAVYERESAGKTTQVIAYDKKDGEYVGMLK 611

Query: 571 FDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
            DFLGL T+ ++  +LD +   G+ + DL  IP DD +           GIFQ E    R
Sbjct: 612 ADFLGLSTMGMIGIALDMI---GMDLEDLYRIPLDDQKVLEAFRRGDVTGIFQFEGRATR 668

Query: 630 QALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
                + PD  + +  + +L RPGP+       Y   K+G++     HP++D +   T G
Sbjct: 669 IVCSDVVPDHFQHLADINALSRPGPLFSGMTAAYCEVKHGRKTPERYHPILDNLTDWTYG 728

Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKN-GISKTI 745
            ++YQEQV+   + L G+ +SE   +R+ + +K+ E + + + + F   A +N G +   
Sbjct: 729 QVVYQEQVLSTIRELGGFPMSEVHSIRKIISQKLGEAQFEAKYKMFEDNACQNHGCTPEQ 788

Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
           A  I+  LA  A Y FN +H  +Y++++Y   W+K H+P  F AA   L   N EK+ K 
Sbjct: 789 AQKIWRFLATSATYSFNIAHCISYSMLAYWQMWIKQHHPTAFYAAQ--LRKVNDEKLYKL 846

Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-------- 856
            +DA + NI I+PPS+N     +    +  +      I GVG  T+  I+E         
Sbjct: 847 MRDAVRHNISILPPSINESMASWSAPMEGVVRAGFLQIPGVGPKTSEVIVEWRNQKIRKG 906

Query: 857 ----SADKPFDSLEDFCSRVDSKKLNRRVLESLV-FAGALDCFGYSRMQ-LLQSLDNIQK 910
               +A  P     D    ++ K +  + +E +V F  A D FG +R+Q L +SL  I K
Sbjct: 907 QKAIAASAPDLMWSDL---LEVKGIGPKSIEKIVAFCEAEDPFGLNRVQDLFKSLRRIIK 963


>gi|328881404|emb|CCA54643.1| DNA polymerase III alpha subunit [Streptomyces venezuelae ATCC 10712]
          Length = 1170

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 292/1093 (26%), Positives = 480/1093 (43%), Gaps = 114/1093 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-GI 67
            P F HL   S YSL  GA     +  + A     A+A+TD + L   + F+ KACA  GI
Sbjct: 2    PGFTHLHTASGYSLRYGASHPERLAARAAERGMDALALTDRDTLAGTIRFA-KACAKEGI 60

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPT-------------------------------- 95
            +P+ G    +D+         G+TP  +                                
Sbjct: 61   RPLFG----VDLAYEPTTPGPGRTPAASPGGDPRDVRRAPGRGPQDIRRVPVRGGAFVDE 116

Query: 96   -VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
              P  + L  +  G+  L  +++  +    G   +   L W      +  ++L  G +  
Sbjct: 117  SAPRALFLARSRAGWASLCAMITAAHA-GGGDHPL---LPWSALCDDDVFVLL--GPASD 170

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH----RGYDRYR-ESQVVQLAYTHEL 209
            + RA        A + L  +++ +GD L +    H     G    R  ++ V  A    +
Sbjct: 171  VGRALAAGRPDRAVRLLAPWRERYGDALRLTAVDHGRSGTGPGSLRLAARTVGFAAEQGV 230

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
              V  N   +         DVL + A   V     +   + + +LK    M +    + E
Sbjct: 231  RPVIGNAVRYADPGQGPVADVLDS-ARRLVPVDPRKELDSGEAWLKGADGMRAAAERIVE 289

Query: 270  A-----------LENTVEIARRCSF-------ILQVHAPILPRFIEKECDDIQKEEENEL 311
            A           LE T  +A  C         I   H P  P  +  E    Q+      
Sbjct: 290  AAGFRRDTAHRLLEQTATVAADCLVDPEDDLGIGSAHFP-EPHLVGAEYRTAQRV----- 343

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                   L  R A G I KGY  +  Y  R+  EL+VIA  +F+ YFL VA  +   ++ 
Sbjct: 344  -------LASRAAAGMILKGYEKRGAYWDRMHQELDVIAHHRFAPYFLTVAQVVDDVREM 396

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I V   RGSGAGS+  + L I   DP+   LL ERFL+  R ++PD DID    RR EV
Sbjct: 397  GIRVA-ARGSGAGSLVNHLLGIAHADPVEHGLLMERFLSKRRTALPDIDIDVESARRLEV 455

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
             R + +++G  RVA +    + + + A+RDVG AL +  + +DR+ K  P+  A   +L 
Sbjct: 456  YRAIIDRFGTARVATVAMPETYRVRHAVRDVGAALSLDPADIDRIAKAFPHIRARD-ALA 514

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A+ +    RE         +L E+ + L+ L R  + H  G+++ D  L    P+     
Sbjct: 515  ALDELPELRELAGERQKYGKLWELVEALDALPRGTAMHPCGVLLSDASLLARTPVVPTSG 574

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
               P++QF+ + +E  GL+K D LG++  + +  ++  + +  G + D+  +P  D ETY
Sbjct: 575  EGFPMSQFDKEDVEDLGLLKLDVLGVRMQSAMAHAVAEVERATGTRPDIDAVPDGDPETY 634

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNG 667
             L+ +  TLG FQ+ES G R  +  +QP    D++  +SL+RPGP+  D +  +   ++G
Sbjct: 635  RLIRSTETLGCFQIESPGQRDLVGRLQPATFHDLVVDISLFRPGPVAADMVRPFIEARHG 694

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +  +   HP ++  L+ET GV+++ EQ+++I ++++G    EAD +RR +     E   +
Sbjct: 695  RAPVRYPHPDLEETLRETYGVVVFHEQIIEIVRIMTGCRRDEADQVRRGLSD--PESQGR 752

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             K  F   A+  G +  +    +E++A F  YGF K+HA A+AV +YQ+AW+K H+P  F
Sbjct: 753  IKLWFTREAAARGYADEVVARTWEIVAAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAF 812

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK---VGDNRIYYSLAAIKG 844
             A  +T +     K +    DAR+  + ++P  VN   V  +   V ++++ + L     
Sbjct: 813  YAGLLTHDPGMYPK-RLLLADARRRGVPVLPLDVNRSAVAHRIELVSESKVRWGLR---- 867

Query: 845  VGTTTARHIMEA-----SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            +G T    I EA      A +P+ SL DF  R   +     V E L   GALD FG +R 
Sbjct: 868  LGLTDVHGISEAESARIEAGQPYASLLDFWERARPRTP---VAERLAQVGALDAFGANRR 924

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
             LL  L  +++      +     H       +G  +  + L      + + R   E  +L
Sbjct: 925  DLLLHLTELRRI-----QRGAASHGGQLPLAQGGKTAPVGLPDL---DETERLSAELGIL 976

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G   S H +  +   LR++G+   +    T  G  + +A    + Q    R G R+ + T
Sbjct: 977  GMDASRHLMGDHHAFLRELGVVSAQRLRDTPHGRTVLVAGAKAATQTPPIRSGKRVIFTT 1036

Query: 1020 FSEPAKEYEANFF 1032
              +     +  FF
Sbjct: 1037 LDDGTGLVDLAFF 1049


>gi|68536799|ref|YP_251504.1| error-prone DNA polymerase [Corynebacterium jeikeium K411]
 gi|78099244|sp|Q4JTH1|DNAE2_CORJK RecName: Full=Error-prone DNA polymerase
 gi|68264398|emb|CAI37886.1| DNA polymerase III, alpha subunit [Corynebacterium jeikeium K411]
          Length = 1153

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 279/941 (29%), Positives = 430/941 (45%), Gaps = 125/941 (13%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQ 68
           F  L   S+Y+ L GA     +++        A+A  D +  + A  F+     +G  + 
Sbjct: 96  FAELHASSAYNFLRGASQPEQMVEAARELGLSALACVDRDGFYGAARFATAVAESGADLA 155

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            + G +L +D                 VP + +L    EGY RL  +++   + D  K S
Sbjct: 156 TVFGAELSLD-----------------VP-LTVLCKGREGYTRLSRVIADARMADPDKDS 197

Query: 129 VRI-CLSWLQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
           VR   L  L E  G   L++L                 +  + +L+ F   FG D + V 
Sbjct: 198 VRYPSLPQLAEAAGGHWLVLL---------------DWRRTDAQLVDF---FGADNVVVE 239

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           LQ      D  R  ++  LA  H L  + ++     + +        +A A + +  +KD
Sbjct: 240 LQHTMNPADADRNERLHALAVRHGLREIVSSAPTCATPKHSR-----LAGAKAALRERKD 294

Query: 245 RPRVTP------DHYLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQVHAPILPRF 295
                P        +L++  EM+ +  D   L  A+E +V++A  C+F L + AP LP F
Sbjct: 295 MAAAEPTTHPVGGSWLRSGEEMLQLAGDCEWLARAVETSVQVAEECAFTLDLVAPNLPHF 354

Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
              E       E   LR     G   R   G       A      +D EL  I ++ F G
Sbjct: 355 PVPE----GYTEMTWLRAITERGGAQRY--GPRGSSAAANQAWATIDRELETIEQLGFPG 408

Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
           YFLIV D + +  +NNI    GRGS A S   +AL IT +D +   LLFERFL+P+R   
Sbjct: 409 YFLIVHDIVSFCHENNI-FCQGRGSAANSAVCFALGITTVDAVASGLLFERFLSPERDGP 467

Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
           PD D+D    RR+E I+YV ++YG E  AQ+    + + + A RD GRAL     Q+D  
Sbjct: 468 PDIDLDIESGRREEAIQYVYSRYGRENAAQVANVITYRRRGATRDAGRALGYAPGQIDAW 527

Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            +       HP                  + + D +  +++++    RH   H+ G+VI 
Sbjct: 528 TR-------HP------------------EQTPDVVQNLAEQMLDHPRHLGIHSGGMVIC 562

Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGV 594
           DRP++Q+VP          V Q++       GL+KFD LGL  L  L  ++D + A RG 
Sbjct: 563 DRPIAQVVPTEWARMEGRSVVQWDKDDCAAVGLVKFDLLGLGMLEALHHAVDQVRAHRGR 622

Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
           +V+L  +   + E Y +L+    +G+FQ+ES      L  ++P    D++  V+L RPGP
Sbjct: 623 EVELWRLDPTESEVYAMLSRADAVGVFQVESRAQMSTLPRLKPRTFYDLVVEVALIRPGP 682

Query: 655 IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           I    V  Y  R+NG E +   HP ++P L +T G+ ++QEQ+MQ+A   +G+S +EAD 
Sbjct: 683 IQGGSVHPYIRRRNGLEPVTFDHPCLEPALTKTLGIPLFQEQLMQMAVDAAGFSGAEADT 742

Query: 713 LRRAMG-KKIKEEMDKQKERFISG-ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
           LRRAMG K+  ++M++ K+RF  G  +KNGI   +A  +++ +  FA YGF +SH+ ++A
Sbjct: 743 LRRAMGSKRSPQKMERLKKRFYQGLEAKNGIRGVVADRLWDKIVAFASYGFPESHSQSFA 802

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM------------- 817
            + Y +AW K HYP EF  A +  +       +    DAR+  ++++             
Sbjct: 803 SLVYYSAWFKYHYPAEFCVALLRAQPMGFYSPQSLLADARRHGVEVLPVDVNDSDVQVDA 862

Query: 818 ------PPSVNTPC--------VDFKVGDNRIYYSLA-AIKGVGTTTARHIMEASAD-KP 861
                 PP  N P             VG  R+  S A  +KG+    A  I+EA      
Sbjct: 863 VASLATPPRTNRPTGVHGLGRGTGEPVGQIRLGLSGAGGVKGISAEVAERIVEARERIGR 922

Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
           F S+ED         L    +E L  AGAL   G +R Q +
Sbjct: 923 FTSVEDLSREAG---LTVAHVEKLARAGALGSLGLTRRQAV 960


>gi|260907414|ref|ZP_05915736.1| DNA polymerase III, alpha chain [Brevibacterium linens BL2]
          Length = 1122

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 306/1101 (27%), Positives = 502/1101 (45%), Gaps = 116/1101 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PSF HL V S+++   G      ++         A AITD + +F A+   +   AAGI 
Sbjct: 2    PSFTHLHVASAFTAHHGTAHPETLVAAAVVAGADAAAITDHDGIFGAIRHVRACLAAGID 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G  L     DN +++        TV  +    +   G+  L+ L+S  +   + + +
Sbjct: 62   PIVGANLQT-RDDNGQLS--------TVTVLAHGHNHGAGWAGLVRLISAAHSPRRRQHT 112

Query: 129  VRICL---SWLQ----------EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +       +W+           E G    ++L  GS   + RA        A   L  ++
Sbjct: 113  LHGTAHRSAWITPDQAPAFLSGETGPVATVLLGPGSD--VGRAVLNGDRPRARALLEAWE 170

Query: 176  KLFGDRLYVNLQRHR-----GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            +     + V +  H           + + ++QLA    +P+V TN   FL  +D    DV
Sbjct: 171  RRLPGGIAVEIVCHHTRPGTAASLQQAADMLQLARVQGVPVVLTNVVRFLRPDDAITGDV 230

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            L + A    +   +       H  +   +  S+  DL   + +   + R  +  L  H  
Sbjct: 231  LDSAAFLLPLGAFE------PHSAQAWLKPASVMHDLAYRICDYAGLRRDDAIDLLAHT- 283

Query: 291  ILPRFIEKECDDIQKEEENELRNK----------AVAGLE-VRL----AQGAIAKGY-HA 334
                  E+  D  +   E +LR +           +AG + VR+     + AI   Y HA
Sbjct: 284  ------ERVADWCRLGPETDLRWRHPKVPELEAIGLAGADPVRVLRQRCEAAITDRYPHA 337

Query: 335  -----QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                 +  R RL  EL  I    F  YFL VAD +   +   + V   RGSGAGS+  + 
Sbjct: 338  YGTGLRRVRDRLSDELATIGGFGFESYFLTVADVVDLIRDMGVRV-QARGSGAGSLVNHL 396

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L I+ +DP+  SLL ERFL   R ++PD DID    RR ++ R V ++YGH RV  +   
Sbjct: 397  LRISAVDPIEHSLLSERFLGNARSTLPDIDIDVESARRHDIYRAVFDRYGHHRVTLLSMQ 456

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DPAHPVSLQAIADDSRFREARL---AD 505
             + +A+ A+RD G AL +  +Q+DR+ K I   +PA     QA+      R+       D
Sbjct: 457  STYRARGAVRDAGAALGLDLAQIDRIAKNIWRFNPAD--FRQALETKPELRDVAAQVKTD 514

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
              +D L++++ +L+ L RH S H  G+++GD  L  L    +     LP++QF+   I+ 
Sbjct: 515  AQLDLLVDLTARLDRLPRHISMHPCGVILGDSDLLSLT-ATQPSGMGLPMSQFDKDDIDD 573

Query: 566  AGLIKFDFLGLKTLTLLQKSLD---------------------FLAQRGVKVDLSLIPFD 604
            AGL+K D LG++  + +  +L                      ++A  G +VDL  IP D
Sbjct: 574  AGLLKLDILGVRMQSSIAHTLTEIARVNGATAAVEGRLPVDAPYVAADG-RVDLEQIPHD 632

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID-NIVV-YN 662
            D  T+ L+ +  TLG FQ+ES G R+ L  MQPD  ED++A +SL+RPGPI  N+V  + 
Sbjct: 633  DEPTFELIRSTHTLGCFQIESPGQRELLGKMQPDQYEDLVADISLFRPGPIQANMVAPFI 692

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            N K G   I+ +HP   P L ET GV+IY EQ+M++       SL+EAD +RRA+     
Sbjct: 693  NAKLGYAPIIYLHPRFRPFLAETYGVLIYHEQLMRVLADCMDISLAEADEIRRALATDSA 752

Query: 723  EEMDKQKERFISGASKNG--ISKTIAVN-IFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
                + + R      + G  + +   ++ I+  +A F  +GF K+H A++A+ +YQ+AW+
Sbjct: 753  AIEARFRARTAGRVDERGRRLFRDREIDRIWTNVAAFGSFGFCKAHGASFALPTYQSAWL 812

Query: 780  KTHYPVEFLAASMTLEMD-NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDN 833
            K HYPVEFL     LE D  +   +    +AR+  I ++P  +N     ++V     G  
Sbjct: 813  KQHYPVEFLTG--ILEHDPGMYPRRLLVAEARRLGITLLPIDINASSDQYRVEQVSPGIK 870

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I +S   I G+       I++    +P+ S+ D   R    + +R ++  L   GA D 
Sbjct: 871  AIRFSFRDISGITDVELTRILDG---QPYTSITDLYERA---RPSRPLMMRLARIGAFDS 924

Query: 894  FGYSRMQLLQS-LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS-VR 951
               +R +  Q+    I  Y + +      K      ++   F D++ ++    + S+  R
Sbjct: 925  L--TRDEHGQAHRGGIIAYVRQLTARTHKKAVMPQPNQVPLFGDEVLVDAAVPDPSAEER 982

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +  VL     GH +D+Y+P+L  +G+    E +    G  + +A + V+ Q    R 
Sbjct: 983  IATDLEVLSTEVDGHVMDLYRPMLEGLGLTHASELLGLRSGTEVLVAGVRVATQTPPMRS 1042

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G R  +++  +     +  FF
Sbjct: 1043 GRRTVFISLDDGTGCIDVTFF 1063


>gi|109522839|ref|YP_655259.1| gp63 [Mycobacterium phage PBI1]
 gi|88910552|gb|ABD58479.1| gp63 [Mycobacterium phage PBI1]
          Length = 1066

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 286/956 (29%), Positives = 446/956 (46%), Gaps = 85/956 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV L  HS++S  +G   +   + ++A     A+A+T+  NL S  +  +     GI+PI
Sbjct: 3   FVSLHTHSTFSYGDGYGPVKEHVQRVAELGMGALALTEHGNLSSHAQLEKACNEIGIKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            GC+L +      +  +Q            +L     G Q L  +V++ +     K   R
Sbjct: 63  FGCELYVAPPGENRKCHQ-----------TVLAMNEVGLQNLNRIVTKSW-----KNFYR 106

Query: 131 I-CLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT--------------F 174
               SW + E   EGLI+L+G +   +        S   +KRL                +
Sbjct: 107 WPTTSWKMLEEHNEGLIVLSGCADSVLSCTLLGGKS-YGDKRLTASKRDIARAAGLIGRY 165

Query: 175 KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELP---LVATNNSLFLSEEDYEAHDVL 231
           +++FGDR Y+  QR  G DR      + LA   EL    LV T +  +    D E   +L
Sbjct: 166 QEVFGDRYYLEAQRFPGLDRTCALNPL-LARLSELTGARLVGTADVHYPRGSDNEMQKIL 224

Query: 232 MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL----------PEALENTVEIARRC 281
            A AH     +        D  L        I+ DL           EA+  +  IA RC
Sbjct: 225 HA-AHRGSTVEATEASWEYDILLTYPESDREIYMDLVGTGLTKAQAREAVLESGRIAERC 283

Query: 282 SFILQVHAPILPRFIEKECDDIQ-KEEENELRNKAV-AGLEVRLAQGAIAKGYHAQDYRQ 339
           + IL  + PI      KE D  +     NEL  K +  G   R+A     +  + Q Y+ 
Sbjct: 284 NVILPKNQPIRFPKPTKEVDGTKVPMSANELIRKWLNEGWHFRMATNPNMRK-NRQAYKA 342

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
           R++ EL ++    F  YFL+++D ++WAK + IPVGP RGS A S+  Y L IT++DP+ 
Sbjct: 343 RVEHELGMMEEKDFLDYFLVLSDAVRWAKDHKIPVGPARGSAAASLVCYLLRITEVDPML 402

Query: 400 F-SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
           F  +LFERF++P R  +PD D+DF  DRR EV RY++ KYG +RV  I  F   + K ++
Sbjct: 403 FPHMLFERFIDPTRTELPDVDLDFSDDRRIEVKRYLEEKYGADRVGNIGNFTRYRGKNSI 462

Query: 459 RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ-- 516
            DV R   +P  + + +  LI         +    +D+ F     A   ++R  E++   
Sbjct: 463 DDVARVYNIPVWETEIVKNLIIERSGGDSRISDSLEDT-FNMFPKAAAVLERHPELANAI 521

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMY--RDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
           +LEG YR    HAAGIVI + P++    +Y          V  ++ K  E  G++K DFL
Sbjct: 522 RLEGNYRGMGVHAAGIVISNTPITDTCAVYERESAGKTTQVIAYDKKDGEYVGMLKADFL 581

Query: 575 GLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
           GL T+ ++  +LD +   G+ + DL  IP DD +           GIFQ E    R    
Sbjct: 582 GLSTMGMIGIALDMI---GMDLEDLYRIPLDDQKVLEAFRRGDVTGIFQFEGRATRIVCS 638

Query: 634 GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            + PD  + +  + +L RPGP+       Y   K+G++     HP++D +   T G ++Y
Sbjct: 639 DVVPDHFQHLADINALSRPGPLFSGMTAAYCEVKHGRKTPERYHPILDNLTDWTYGQVVY 698

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKN-GISKTIAVNI 749
           QEQV+   + L G+ +SE   +R+ + +K+ E + + + + F   A +N G +   A  I
Sbjct: 699 QEQVLSTIRELGGFPMSEVHSIRKIISQKLGEAQFEAKYKMFEDNACQNHGCTPEQAQKI 758

Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
           +  LA  A Y FN +H  +Y++++Y   W+K H+P  F AA   L   N EK+ K  +DA
Sbjct: 759 WRFLATSATYSFNIAHCISYSMLAYWQMWIKQHHPTAFYAAQ--LRKVNDEKLYKLMRDA 816

Query: 810 RQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA------------ 856
            + NI I+PPS+N     +    +  +      I GVG  T+  I+E             
Sbjct: 817 VRHNISILPPSINESMASWSAPMEGVVRAGFLQIPGVGPKTSEVIVEWRNQKIRKGQKAI 876

Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLV-FAGALDCFGYSRMQ-LLQSLDNIQK 910
           +A  P     D    ++ K +  + +E +V F  A D FG +R+Q L +SL  I K
Sbjct: 877 AASAPDLMWSDL---LEVKGIGPKSIEKIVAFCEAEDPFGLNRVQDLFKSLRRIIK 929


>gi|190892912|ref|YP_001979454.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
 gi|190698191|gb|ACE92276.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
          Length = 1087

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 279/1021 (27%), Positives = 478/1021 (46%), Gaps = 78/1021 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV + +S L GA S + +          A+ + D N+L   +   + + A G++ +
Sbjct: 3    YAELQVTTHFSFLRGASSADELFATAKELGIDAVGVVDRNSLAGIVRALEASRATGVRLV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+LD  +QD +              SI++  +    Y RL    +R+  L +G+    
Sbjct: 63   VGCRLD--LQDGM--------------SILVYPTNRAAYSRL----TRLLTLGKGRGGKD 102

Query: 131  ICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             C+  L ++    EGL+       G +      ++  V   +L    ++FG+R YV+L  
Sbjct: 103  NCILHLDDVALYAEGLL-------GILVPDLPDDTCAV---QLRKMSEIFGNRAYVSLAL 152

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK--DR 245
            R R  D+ R  ++  LA T ++  V TN+ LF      +  DV+  + ++T + +   +R
Sbjct: 153  RRRPNDQLRLHEISNLAATFKVRTVVTNDVLFHEPGRRQLQDVVTCIRNNTTIDEVGFER 212

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R   D YLK   EM  +    PEAL  T+EI  RC F L       P        D Q+
Sbjct: 213  ER-HADRYLKPPEEMERLLPRYPEALARTMEIVERCKFSLDELTYQYPEEAIVPGMDAQQ 271

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E+ +R      + +R  +G   K   A      +  EL++I  MK++ YFL V   ++
Sbjct: 272  SLEHYVRE----CIPIRYPEGLPRKVLRA------VRHELDLIKEMKYAPYFLTVFSIVK 321

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +
Sbjct: 322  FARSQGI-LCQGRGSAANSAICYILGITSIDPETNDLLFERFVSKERDEPPDIDVDFEHE 380

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR++VI+++   YG ++ A   T    +AK A+RDVG+AL +P   +  L   +      
Sbjct: 381  RREQVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLPEDVIKALSSGM------ 434

Query: 486  PVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              S      D   RE  L +P   RL   L+++++L G  RH   H  G V+    L  L
Sbjct: 435  -WSWSEELPDRNIRELNL-NPDDRRLALTLKLARQLMGAPRHLGQHPGGFVLTHDRLDDL 492

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            VP+      D  + +++   +E    +K D L L  LT + K+ D +   +   +DL+ I
Sbjct: 493  VPIEPATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMNKAFDLIRDHKDEDLDLATI 552

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
            P +D  TY ++    TLG FQ+ES      L  ++P+   D++  V++ RPGPI   +V 
Sbjct: 553  PQEDAATYAMIRKADTLGTFQIESRAQMSMLPRLKPETFYDLVIQVAIVRPGPIQGNMVH 612

Query: 661  -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+ GKEK     P ++ +L  T GV ++QE  M++A + +G++  EAD LR++M  
Sbjct: 613  PYLRRREGKEKPEYPTPELEAVLGRTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMAT 672

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    + + K++ +SG  KNG S   A   F  L  F  YGF +SHAA++A+I+Y + +
Sbjct: 673  FKFTGGVSRFKDKLVSGMIKNGYSPEFAEKTFGQLEGFGSYGFPESHAASFALIAYASNY 732

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVDFKVGDNR- 834
            +K H+P  F AA +  +        +   DA+   +++ P  +N     C   ++G    
Sbjct: 733  VKCHFPDVFCAALLNSQPMGFYAAAQIVGDAKNHGVEVRPVCINKSRWDCTLERIGSGER 792

Query: 835  --IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA-L 891
              +   +  ++G+    A  I+ A  ++ F+S++D   R     +    L+ L  A A L
Sbjct: 793  HAVRLGMRMVRGLAVADAARIVAARMNREFESVDDVWRR---SNVPTEALDQLAEADAFL 849

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
                  R   + ++  +++    +      +   +   ++     ++ L + +  ++ V+
Sbjct: 850  PSLKLQRRDAIWAIKALREAPLPLFAAAAEREVKVIPEQQ---EPEVRLRQMTEGHNVVQ 906

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
                   +G     HP+   +  L+K  I    E++    G  +  A +V+ +Q   + K
Sbjct: 907  DYGH---VGLTLRDHPITFLRRDLQKRNIVTCSEAMNARDGRWLMAAGLVLVRQMPGSAK 963

Query: 1012 G 1012
            G
Sbjct: 964  G 964


>gi|37784570|gb|AAP47636.1| DnaE precursor [Aphanizomenon ovalisporum]
          Length = 503

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 181/403 (44%), Positives = 260/403 (64%), Gaps = 27/403 (6%)

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
           GS+ AYA+ IT+IDP+   LLFERFLNP+R SMPD D DFC ++RD+VI YV  KYG +R
Sbjct: 1   GSLVAYAMGITNIDPVHHGLLFERFLNPERKSMPDIDTDFCIEKRDKVIEYVTQKYGKDR 60

Query: 443 VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS----RF 498
           VAQIITF  L +KA L+DV R L +PY + D++ KLIP     P  L+ +  D      F
Sbjct: 61  VAQIITFNRLTSKAVLKDVARVLNIPYGEADKMAKLIPVVRGKPTKLKVMISDETPAPEF 120

Query: 499 REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
           +E    D  V   ++++ ++EG  +    HAAG+VI   PL ++VP+ R+    + +TQ+
Sbjct: 121 KEKYDNDQKVRHWVDMAMRIEGTNKTFGVHAAGVVISAEPLDEIVPLQRNNDGXV-ITQY 179

Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVD-------------------L 598
            M+ +E  GL+K DFLGL+ LTL+QK++D + Q  GV++D                    
Sbjct: 180 FMEDLESMGLLKMDFLGLRNLTLIQKTIDLIEQNSGVRIDPDEITGQERKAQKILAKGEY 239

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             +P D  ++Y LL      GIFQLESSGMRQ +  ++P  IEDI ++++LYRPGP+D  
Sbjct: 240 KTLPKDVKKSYELLEAGDLEGIFQLESSGMRQIVRDLKPSNIEDISSILALYRPGPLDAG 299

Query: 659 VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
           ++  + NRK+GKE I    P++ P+L ET G ++YQEQ+M+ AQ ++GYSL +AD+LRRA
Sbjct: 300 LIPKFINRKHGKETIEYESPILXPVLNETYGXMVYQEQIMKXAQDMAGYSLGQADLLRRA 359

Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
           MGKK    M KQ+E+F+ GA+KNG+ K +A  +F+ +  FA+Y
Sbjct: 360 MGKKKVAXMQKQREKFVDGAAKNGVKKQVAEELFQQMLNFAEY 402


>gi|257068737|ref|YP_003154992.1| DNA polymerase III, alpha subunit [Brachybacterium faecium DSM
           4810]
 gi|256559555|gb|ACU85402.1| DNA polymerase III, alpha subunit [Brachybacterium faecium DSM
           4810]
          Length = 1141

 Score =  354 bits (909), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 279/957 (29%), Positives = 440/957 (45%), Gaps = 100/957 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS +S L+GA S  ++  + A     AIA+ D + L  A+ F+  A  AGI  +
Sbjct: 51  YAELHAHSHFSFLDGASSPEDMAGQAARLGLGAIALVDHDGLPGAVRFATAAAEAGIATV 110

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVP----------SIVLLVSTAEGYQRLIELVSRMY 120
            G +L + ++          TP  + P           +++LV    GY++L   ++R +
Sbjct: 111 FGAELSLGLEPG--AVTASSTPVVSAPRTGVPDPDGEHLLVLVRDTAGYRQLSAAIARAH 168

Query: 121 LLDQGKQSVRICLSWLQEIGTEG-LIMLTGGSSGPIDRAF-------------------- 159
           L  + K   R  L+ L  +  EG  ++LTG   G + RA                     
Sbjct: 169 LDSRQKGVPRYRLAELSRLAREGHWLILTGCRKGAVTRAAAEHLEAGDLDAAAHAAAAAI 228

Query: 160 -----FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVAT 214
                 F    VA + L+       D L+  L +  G    RES  +       LPLVA+
Sbjct: 229 TRLVELFGPGNVAVE-LMVGGGGEADELHDALAQ--GARLVRESHGLD---EISLPLVAS 282

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
            N+ +    D    D   A+     +++ D    +   +L++  EM  +    P A+   
Sbjct: 283 TNAHYARPSDRRLADTHAALRAGVPLAEADPYLSSRPAHLRSGEEMAQLLPRYPGAIAQA 342

Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKE--EENELRNKAVAGLEVRLAQGAIAKGY 332
             + R C+  L++ AP LP F      D      E  E+  +   G      +     G 
Sbjct: 343 ARLGRDCALDLRLLAPDLPPFPVPAGHDEASWLVELVEIEGRERYGPRPTPERPEQVPGA 402

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
            AQ     +D EL VI  ++F GYFLIV + + +     I +  GRGS A S   YAL I
Sbjct: 403 WAQ-----IDHELKVITDLRFPGYFLIVHEIVDFCAGEGI-LAQGRGSAANSAVCYALGI 456

Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
           T ++P+   LLFERFL P+R   PD DID   DRR+EVI++V  +YG E  AQ+    + 
Sbjct: 457 TAVEPVGHQLLFERFLAPERDGPPDIDIDIASDRREEVIQHVYERYGRENAAQVANVITY 516

Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
           +AK A+RD  RAL       D   K +               +  F   R AD   D ++
Sbjct: 517 RAKLAVRDAARALGYDTGAQDAFAKRV---------------ERSFSALREADVPGD-VV 560

Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
           E++ +L    RH   H+ G+V+ DRP+ ++ P+     +D  V Q++     +AGL+KFD
Sbjct: 561 ELAHRLRDAPRHLGIHSGGMVLCDRPVIEVCPVQWAAMADRSVLQWDKDDCAEAGLVKFD 620

Query: 573 FLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            LGL  LT L  +L  +A+  G   +L  +P +D   Y +L    ++G+FQ+ES      
Sbjct: 621 LLGLGMLTALDHALRIIAEHHGQHFELHTLPQEDPAVYDMLCAGDSVGVFQVESRAQIST 680

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
           L  ++P    D++  V+L RPGPI    V  Y  R+N +E +  +HP ++  L  T G+ 
Sbjct: 681 LPRLRPREFYDLVVEVALIRPGPIQGGSVHPYIRRRNKEEPVTFLHPRLEKSLGRTLGIP 740

Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVN 748
           ++QEQ+MQ+   ++ ++ ++AD LRRAMG K+  ++M +  +   +G +++GI    A  
Sbjct: 741 LFQEQLMQMVVDVADFTPAQADQLRRAMGSKRSTQKMLELSDALFAGMAEHGIVGEDAEA 800

Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
           +   L  FA+YGF +SHA ++A + Y ++++K HYP  F A  +  +       +    D
Sbjct: 801 VHRKLLAFANYGFPESHAYSFAYLVYASSYLKCHYPAAFTAGLLRSQPMGFYSPQSLVAD 860

Query: 809 ARQFNIQIMPPSV--NTPCVDFKV-GDNRIY---------------------YSLAAIKG 844
           AR+  +    P V  +    D +   ++R Y                       L  ++G
Sbjct: 861 ARRHGVLTRGPDVLASRARTDLETDAEHRGYRIDPPGEQIQGEAAAQGPAIRLGLDQVRG 920

Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
           + T TA  I+ E      F S+ D   RV   +L  R LE+L  AGALD    SR Q
Sbjct: 921 ISTETAEEIVAERGRGGQFTSVPDLARRV---RLTARQLEALATAGALDALASSRRQ 974


>gi|239502677|ref|ZP_04661987.1| putative DNA polymerase III alpha subunit [Acinetobacter baumannii
           AB900]
          Length = 785

 Score =  354 bits (909), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 243/765 (31%), Positives = 395/765 (51%), Gaps = 75/765 (9%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           + V S +S+ +  L+++ I++        ++AI D  +L + ++FS KA  A I+P+ GC
Sbjct: 6   MSVQSDFSIGKSLLTVDKIVEAAKGLGYSSVAIVDDMSLHALVDFSNKATKANIKPVFGC 65

Query: 74  QLDI--DMQDNLKMTNQG---KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           +L +  D +      + G   K      P +   V + +G + L +L++     +Q    
Sbjct: 66  RLRVYDDSKYRKPPASSGIAEKRNLMFCPKV--YVKSEKGIKGLFKLLTDANSKEQYYYH 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            R  L  L ++  E +++ TG   G         S    E+ L   K  FGD LY+    
Sbjct: 124 SRTDLDALCKL--EDVVVTTGDMYG-------LFSHPDHERILKVLKARFGDDLYIEFSP 174

Query: 189 HRGYDRYRESQVVQLAYTHE-LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                  R + +  LAY  E +  V T    +L  ED +  DVL A+A +T +    RP 
Sbjct: 175 INTPLFDRLNYLGYLAYEREKIKTVVTYPFNYLENEDADTLDVLSAIATNTQLDLHYRPI 234

Query: 247 -----------RVTPDHYLKN-----RSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
                      +   DH         + E V+      E L+N  E+  +C +I +    
Sbjct: 235 QYVKDFGFKEPKFILDHTKAAIQRMAKYERVNSAEAWKEGLKNISELVDKCQYIFEKQPV 294

Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD------YRQRLDFE 344
            LP+        +  +E   L  K + G + R ++  +  GY          Y+ RL +E
Sbjct: 295 SLPK--------LSTDEFKTLCAKCLEGWKKRFSKEIL--GYKPTKAELDTVYKSRLGYE 344

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           L+++ +M F  YFL+V D + W+K N + VGPGRGS  GS+ AY L ITD+DP+RF L+F
Sbjct: 345 LSILKKMGFESYFLLVEDLVMWSKNNGVIVGPGRGSVGGSLVAYLLGITDVDPIRFGLIF 404

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           ERF+NP+R+ +PD D+DF    R +VI Y+  KYG + VA I  + +L + +ALRD GR 
Sbjct: 405 ERFINPERLDLPDADLDFASSGRYKVIDYLVEKYGEDYVAGISNYSTLASASALRDTGRI 464

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-------LLEISQK 517
             +  +Q+    KL+  +    + L   AD         A P +D+       + + + K
Sbjct: 465 SGLNNTQLSA-TKLVLKEHGTSLDLNTSAD---------AVPELDKFRNEHPVIWKHATK 514

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
           L G  +    HAAGIV+   P+     +  + R   PV  ++ + +E  GLIK D LGL 
Sbjct: 515 LAGTMKSFGQHAAGIVVAGEPIVNRAVL--ETRGKSPVVNWDKRVVEDWGLIKMDLLGLA 572

Query: 578 TLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
           TL +L  + D++ +R G+++DL  IP DD +T   L    T+G+FQLESSGM+Q L+ + 
Sbjct: 573 TLDVLNIACDYVKERHGIELDLLKIPLDDEKTMQALGRGETVGVFQLESSGMQQLLKNIS 632

Query: 637 PD---CIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
                  +DI A+ +LYRPGP+D+ ++  Y + + G +++   H +++P+L +T GV++Y
Sbjct: 633 NGGAVTFDDICAVTALYRPGPMDSGMLDDYVDLRKGLKEVTYAHEVLEPVLSDTYGVVVY 692

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
           QEQ M +A+ L+G+S++E+D LR+A+GKK  ++M + K +FI GA
Sbjct: 693 QEQTMALARKLAGFSMAESDHLRKAIGKKDLKKMAELKPKFIDGA 737


>gi|237810714|ref|YP_002895165.1| error-prone DNA polymerase [Burkholderia pseudomallei MSHR346]
 gi|237505761|gb|ACQ98079.1| error-prone DNA polymerase [Burkholderia pseudomallei MSHR346]
          Length = 1076

 Score =  354 bits (909), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 300/1061 (28%), Positives = 467/1061 (44%), Gaps = 123/1061 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D     + G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDDAAPGHDPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 127

Query: 129  VRICLSWLQEIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
             R+    L       L  L G      I    +   + V + +L  F  LFG+R  + L 
Sbjct: 128  YRLTPRMLAAP-PRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLV 186

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            Q  R  D     QV        + +VA  +            D + A+     +++    
Sbjct: 187  QLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHA 246

Query: 247  RVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             + P  + +L+ R  +  +F    +AL  T  +   C F L               DD++
Sbjct: 247  -LAPNGEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DDLR 288

Query: 305  KEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             E  +E           L  +  AG   R   G           RQR++FEL +IA +K+
Sbjct: 289  YEYPHEIVPAGHTPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKY 342

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL V D +++A+  +I +  GRGS A SV  Y L +T+I+P + +LLFERFL+ +R 
Sbjct: 343  EPYFLTVYDIVKYARSKDI-LCQGRGSAANSVVCYCLGVTEINPQQSTLLFERFLSRERG 401

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+
Sbjct: 402  EPPDIDVDFEHQRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVE 461

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAS 526
            R+ K                D SR   AR A    DP V  +    EI+ +L    RH S
Sbjct: 462  RVAK-----------EHRWFDGSRDLLARFASVGLDPEVPLIRTWAEIAARLLNFPRHLS 510

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ 
Sbjct: 511  QHSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAF 570

Query: 587  DFL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            D + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P  
Sbjct: 571  DMITAWRGPPLPDGRPFRLEHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRG 630

Query: 640  IEDIIALVSLYRPGPIDNIVV--YNNRK-----NGKEKIVSIHPLIDPMLKETQGVIIYQ 692
              D++  VS+ RPGPI    V  Y  R+         +I      ++ +L+ T G+ I+Q
Sbjct: 631  YYDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQ 690

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            EQVMQIA + +G++  EAD LRRAM   K K ++ K  ER ++G  + G S+  A  IFE
Sbjct: 691  EQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFE 750

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++
Sbjct: 751  QIKGFGEYGFPESHAASFAKLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKR 810

Query: 812  FNIQIMPPSVNT----------PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
              + ++P               P      G   +   L+ ++G+G   AR I  A A  P
Sbjct: 811  HGVTVLPIDATKSGWEASLEAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAACAAGP 870

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F S+++   R     L RR           D    +      +L   ++ A W       
Sbjct: 871  FASVDELARRA---CLERR-----------DLEALAAANAFATLAGNRRDALW------- 909

Query: 922  KHENIFAHEKGTFS----DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL-- 975
                  A E+G  +    D+           +     + R +G   + HP+ + +P L  
Sbjct: 910  -QAVAAAPERGLLAAAPIDEAVRPALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDA 968

Query: 976  RKMGIKGYEESVATIR----GNNIRLAAMVVSKQQKKTRKG 1012
            R++       S A +R    G   R   +V ++Q   T KG
Sbjct: 969  RRL------SSAAALRDRRNGRLARACGLVTARQMPGTAKG 1003


>gi|227496030|ref|ZP_03926341.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226834423|gb|EEH66806.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 1110

 Score =  354 bits (908), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 315/1083 (29%), Positives = 490/1083 (45%), Gaps = 125/1083 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L  HS+YS L+GA    ++    A     A+A+TD + +   +  +Q   A G+  
Sbjct: 5    SYAELHSHSAYSFLDGANEPEDLAAAAAELGLTALALTDHDGMPGIVRHAQAGRALGLPT 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + G +L   M D   +    ++P              EGY+ L+  +S+  L    +Q  
Sbjct: 65   VHGTELT--MSDGAHLPVLARSP--------------EGYRHLVSAISQHNLQAGRRQEP 108

Query: 130  RICLSWLQEI--GTEGL------IMLTGGSSGPIDRAF------FFNSSQVAEKRLLTFK 175
               L  L +   G  G+      ++LTG + GP+ RA           +Q A+  L    
Sbjct: 109  AHRLEDLAQALRGGTGMAAPSSCLVLTGTARGPLRRALGDPARPHTWDTQAADICLGRMV 168

Query: 176  KLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +L G D + V +  + G  D      + +LA +H LP++AT         D    DVL A
Sbjct: 169  ELLGADGVAVEITLNGGPTDAALTRMLTRLAASHRLPVLATGAVRCARPADSRLADVLTA 228

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
                T +            +L++ +EM  +    P+A+  T E+A   +F L + AP LP
Sbjct: 229  TRLGTDLEGARGHLPAIGRWLRSGAEMARLHRRAPQAVGVTAELAADLAFDLALVAPDLP 288

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYR--QRLDFELNVIAR 350
                          +    +   + L     QGA+ + G   QD    Q LD EL VI  
Sbjct: 289  ------------AAQVPPGHTPASWLRELTRQGALLRYGTREQDPHAWQVLDHELEVIES 336

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            + F GYFLIV   +++ +++ I +  GRGS A S   YAL IT +D +R  +LFERFL+P
Sbjct: 337  LGFPGYFLIVRSIVEFCEESGI-LCQGRGSAANSAVCYALGITAVDAVRHKMLFERFLSP 395

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
             R   PD D+D    RR+EVI++V  +YG  R AQ+    S + ++A+RD  RAL  P  
Sbjct: 396  GRAGYPDIDLDIEACRREEVIQHVYTRYGRHRAAQVANVISYRPRSAVRDAARALGYPAG 455

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
              D   + I     H  S +    D + RE    D   +++L+++ +L  L RH   H+ 
Sbjct: 456  LQDAWARSI----EHGWSRE---QDGQARE----DAVPEQVLDVADRLLRLPRHLGVHSG 504

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+V+  +P++++ P+         V Q++      AGL+KFD LGL  LT L+ +   L 
Sbjct: 505  GMVLAAQPVTEVCPVRWAAMEGRSVLQWDKDDCAAAGLVKFDLLGLGMLTALRLAFTSLG 564

Query: 591  QRGVKV---------------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             RG KV                      L  +P +D   Y LL    T+G+FQ+ES    
Sbjct: 565  DRGEKVPDLTSRQGDGILRPAQVGRPWGLHTLPEEDPAVYRLLQAADTIGVFQVESRAQM 624

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
              L  ++P    DI+  V+L RPGPI  D +  Y  R+ G+E+   +H L+ P L++T G
Sbjct: 625  ATLPRLRPRVFYDIVVEVALIRPGPIQGDAVNPYIRRRLGREEPDYLHDLLRPALEKTLG 684

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIA 746
            V ++QEQ+MQIA   +G+S  EAD LR+AMG K+  E M+    R + G  + GIS+  A
Sbjct: 685  VPLFQEQLMQIAVDAAGFSPVEADALRQAMGAKRSVERMEALHLRLVEGMKERGISQGTA 744

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +F+ L  FAD+GF +SHA ++A + Y +AW+K   P +F A  +  +       +   
Sbjct: 745  ELVFDKLRAFADFGFPESHAFSFAYLVYASAWLKVRRPEDFYAGVLAAQPMGFWSPQTLV 804

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNR------------------------------IY 836
             DAR+  +Q++   V+   V   V   R                              + 
Sbjct: 805  ADARRHGVQVLAADVSHSEVQASVETVRPGAPSQACVGGAGEEASTALTHLDTHRDLAVR 864

Query: 837  YSLAAIKGVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              LA IKG+G   A R + E  +   +  + D   RV   +L R+ LE+L  AGAL   G
Sbjct: 865  LGLAPIKGIGRELAERIVTERQSHGAYRDVADLARRV---RLGRKHLETLAAAGALASLG 921

Query: 896  YSRMQLLQSLDNI-QKYAQWVEKNRTNKHENIFAHE--KGTF--SDKITLEKFSVENSSV 950
             SR Q L S   +  ++ +    +RT      +      GT   S    L + S +   V
Sbjct: 922  VSRRQALWSAGVLADEHGRPHLGHRTGGDRTPWCQPPLPGTAVGSRAPDLPEMSAQERHV 981

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                + R+ G     HPL   +  L + G+           G  +R+A +V  +Q+  T 
Sbjct: 982  ---ADLRLTGVSTETHPLAFLRTALAEDGVVEVVRVGQQGNGAQVRVAGVVTHRQRPYTA 1038

Query: 1011 KGS 1013
             G+
Sbjct: 1039 AGT 1041


>gi|302550406|ref|ZP_07302748.1| DNA polymerase subunit III [Streptomyces viridochromogenes DSM 40736]
 gi|302468024|gb|EFL31117.1| DNA polymerase subunit III [Streptomyces viridochromogenes DSM 40736]
          Length = 1173

 Score =  354 bits (908), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 287/1055 (27%), Positives = 482/1055 (45%), Gaps = 63/1055 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-AGI 67
            P F HL   S +SL  GA     + ++ +     A+A+TD + L  A+ F+ KACA AG+
Sbjct: 2    PGFTHLHTVSGFSLRYGASHPERLAERASGRGMDALALTDRDTLAGAVRFA-KACAKAGV 60

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFP---------TVPSIVLLV-STAEGYQRLIELVS 117
            +P+ G  L +   +  +   + +   P         + P +  L      G+  L  LVS
Sbjct: 61   RPVFGADLAVAGVEPPEPGPRSRRRTPVRGGAFVDESAPRVTFLARDGGRGWGELCRLVS 120

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              +  +         L W +    EGL +L G  S  + RA        A + L+ ++++
Sbjct: 121  AAHEAEGAP-----LLPWGRNH-AEGLTVLLGPDS-EVGRALAAGRPDRAARLLVPWREV 173

Query: 178  FGDRLYVNLQRH----RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +GD L +    H     G    R  ++ V  A    +  V +N   +         DVL 
Sbjct: 174  YGDALRLEAVWHGRKGTGPGSLRLAARTVGFAAEQRIRPVLSNAVRYADPGLGPVADVLD 233

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            A A   V     +   + + +LK    M ++   + EA     + A R   + Q  A   
Sbjct: 234  A-ARRLVPVDPAKELDSGEAWLKGAEAMFAVAERIVEAAGFRRDTAHR--LVEQTEAAAA 290

Query: 293  PRFIEKECD----DIQKEEENEL---RNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFE 344
               ++ E D     +   E + +   R  A   L  R   G + +GY   ++Y +R+  E
Sbjct: 291  ECLVDPEDDLGIGTVHFPEPHLVGAGRRTAQRTLASRAVAGMVLRGYDRRREYWERMHHE 350

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L++IA   F+ YFL VA  +   ++  + V   RGSGAGS+  + L I   DP+   LL 
Sbjct: 351  LDIIAHHGFASYFLTVAQVVDDVREMGVRVA-ARGSGAGSLVNHLLGIAHADPVEHRLLM 409

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFL+ +R+ +PD DID    RR EV R + +++G ERVA +    + + + A+RDVG A
Sbjct: 410  ERFLSKERVVLPDIDIDVESARRLEVYRAIIDRFGTERVATVAMPETYRVRHAIRDVGAA 469

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L M  +++DR+ K  P+  A      A+ +    R          +L E+ + L+ L R 
Sbjct: 470  LSMDPAEIDRVAKSFPHIRARDAR-AALEELPELRALAGEKEKYGKLWELVEALDALPRG 528

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             + H  G+++ D  L    P+        P++QF+   +E  GL+K D LG++  + +  
Sbjct: 529  VAMHPCGVLLSDASLLARTPVMPTSGEGFPMSQFDKDDVEDLGLLKLDVLGVRMQSAMAH 588

Query: 585  SLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +++ + +  GV+VDL  +   D ETY L+ +  TLG FQ+ES G R  +  +QP    D+
Sbjct: 589  AVEEVRRVSGVRVDLDALAPGDPETYRLVQSTETLGCFQIESPGQRDLVGRLQPATFHDL 648

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +  +SL+RPGP+  D +  +   ++G+  I   HP ++  L++T GV+++ EQ++ I  +
Sbjct: 649  VVDISLFRPGPVAADMVRPFIEARHGRAPIRYPHPDLEEPLRDTYGVVVFHEQIIDIVDI 708

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            ++G    EAD +RR +     E   + K  F   A+  G         +E++  F  YGF
Sbjct: 709  MTGCGRGEADRVRRGLSD--PESQARIKVWFAQHAAARGYDAETIQRTWEIVEAFGSYGF 766

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+  + ++P  V
Sbjct: 767  CKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRGVPVLPLDV 825

Query: 822  NTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            N   V  ++    G   +  +L+ + G+    A  I E    +P+DSL DF  R    + 
Sbjct: 826  NKSGVAHRIELVSGTWGLRLALSDVHGISEAEAARIAEG---QPYDSLVDFWER---GRP 879

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            +R + + L   GALD FG +R  L   L  + + A+     +            G  +  
Sbjct: 880  SRPLAQRLAQVGALDAFGANRRDLQLHLTELHRGARGGGGGQ-------LPLAGGRRTAP 932

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
              L   +   SS R   E  VL    S + +D ++  L ++G+           G  + +
Sbjct: 933  AGLPDLT---SSERLSAELGVLSMDASRNLMDDHRAFLDELGVVSARRLREARHGETVLV 989

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A    + Q    R G R+ + T  +     +  FF
Sbjct: 990  AGAKAATQTPPIRSGKRVIFSTLDDGTGLVDLAFF 1024


>gi|307730066|ref|YP_003907290.1| DNA polymerase III subunit alpha [Burkholderia sp. CCGE1003]
 gi|307584601|gb|ADN57999.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1003]
          Length = 1049

 Score =  354 bits (908), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 288/1033 (27%), Positives = 474/1033 (45%), Gaps = 94/1033 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S++S L GA     +  + A     A+AITD  +L   +     A  A + 
Sbjct: 9    PAYAELFCLSNFSFLRGASHAEELAGRAAQLGYSALAITDECSLAGVVRAHVAAKEAKLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G           ++ N   +P      ++LL     GY  L EL++ +      K  
Sbjct: 69   FIVG--------SYFRLVNADGSP---AFGLILLAKNRNGYGNLSELIT-LARTRAPKGE 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L     +   +L       I    F    +V + +L    + F  R +V L  
Sbjct: 117  YRLTPQDLSRPDRDYRHLLGVPDCLAILVPNFPAKEEVLDAQLEWLDETFPGRAWVGLVL 176

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H R  D      V  +A   ++P+VA    L          D L A+     V +     
Sbjct: 177  HQRAMDDIHRGAVEFIARNRDVPVVALGEVLMHVRSRKPLQDTLTAIRVGKPVHECGYDL 236

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  + +++S  PEAL  TV+IA RC+F L               D+++ E
Sbjct: 237  APNAEQHLRSRLRLANLYS--PEALAATVDIAARCTFSL---------------DELRYE 279

Query: 307  EENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
              +EL           R +   G + R   G   +       +++++ EL +IA +++  
Sbjct: 280  YPDELVPSGFTPAAYLRQETYIGAQRRFPSGIPLQ------VQEQIEHELELIAELQYEP 333

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL V D +++A+  +I +  GRGS A S   Y L +T++DP R ++LFERF++ +R   
Sbjct: 334  YFLTVYDLVRFARSQHI-LCQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEP 392

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF   RR+EVI+Y+  KYG +R A      + +A+  LR+ G+AL +    VD +
Sbjct: 393  PDIDVDFEHQRREEVIQYIYRKYGRDRAAIAAAVSTYRARGVLRETGKALGVDLQIVDAV 452

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
             K      +H     +     RF E  L    P +     ++ +L G  RH S H+ G V
Sbjct: 453  AK------SHHWFDNSADLLKRFEECGLNPQTPLIRAWATLAAQLYGFPRHLSQHSGGFV 506

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QR 592
            I    L++LVP+      +  V Q++   +E  GL+K D L L  L+ ++++L+ ++ QR
Sbjct: 507  ISRGKLTRLVPVENAAMPERSVIQWDKDDLESLGLLKVDVLALGMLSAIRRTLELVSEQR 566

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G + ++  IP +D  TY ++    T+G+FQ+ES      L  M+P    D++  V++ RP
Sbjct: 567  GERFEMQDIPAEDEATYDMICAADTVGVFQIESRAQMSMLPRMRPRVFYDLVIEVAIVRP 626

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GPI    V  Y  R+ G E +      ++  L  T GV I+QEQVMQ+A L +G++  EA
Sbjct: 627  GPIQGGAVHPYLRRRQGFEPVTYPSAALETALGRTLGVPIFQEQVMQVAILAAGFTAGEA 686

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            D LRRAM   K K  + K  +R + G  + G     A  IFE +  F +YGF +SHAA++
Sbjct: 687  DQLRRAMAAWKRKGGLGKYYDRIVLGMQERGYDLAFAEAIFEQIKGFGEYGFPESHAASF 746

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT----PC 825
            A++ Y ++W+K H P  FLAA +  +        +  QDA++  ++++P  V+       
Sbjct: 747  ALLVYTSSWLKCHEPEAFLAAMLNSQPMGFYSSSQLVQDAQRHGVKVLPVDVSVSGWNSS 806

Query: 826  VDFKVGDNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            ++ + G  R  +   L+ ++G+   TA  I  A A +PF S++D   R     L+RR L 
Sbjct: 807  LERRAGGERPAVRLGLSLLRGMKEGTAGRIENARAVRPFASVKDLARRA---ALDRRDLH 863

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
             L  A A           L SL   ++ A W       + + + A       D+    + 
Sbjct: 864  ILADANA-----------LASLAGNRREALWQSAAAVPEKDMLAA---AAVEDETP--EL 907

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR----GNNIRLAA 999
               + +     + R LG     HPL++ +P L    +       +T+R    G   R   
Sbjct: 908  GAPSEAHDIVADYRSLGLTLGRHPLELLRPQL----LANRLMPASTLRTYRDGRLARGCG 963

Query: 1000 MVVSKQQKKTRKG 1012
            +V  +Q+  T KG
Sbjct: 964  LVTVRQRPGTAKG 976


>gi|308190227|ref|YP_003923158.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER]
 gi|307624969|gb|ADN69274.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER]
          Length = 967

 Score =  353 bits (907), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 217/586 (37%), Positives = 333/586 (56%), Gaps = 32/586 (5%)

Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
           ++ +RL++E NVI ++ +  YFLI+ D + WAK   I +GPGRGS AGS+ +Y L IT+I
Sbjct: 250 EWNKRLEYEFNVIKKLGYINYFLIIQDLVNWAKSQKIAIGPGRGSAAGSLVSYLLNITEI 309

Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
           +PLR++LLFERFLNPDR+S PD DID   DRR EV  Y+Q KYG ++   I TF ++ AK
Sbjct: 310 NPLRYNLLFERFLNPDRVSWPDIDIDIQDDRRFEVFEYLQKKYGVDKTGLISTFQTIGAK 369

Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
            A+RD+GR + +    ++R+ K I +D        A  +D  F+      P    L + +
Sbjct: 370 MAIRDMGRVIGISLIDINRISKTIKSDNL----TDAYKNDIDFKIEMDNYP---ELYKHA 422

Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            K+EGL R  S HAAG +I    L   VP+      +    Q  M +IE  GL+K D LG
Sbjct: 423 LKIEGLPRQQSFHAAGFIIAKDKLFNYVPVCLSNLDNYQQVQVPMNYIESYGLLKIDLLG 482

Query: 576 LKTLT---LLQKSL------DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
           L+TLT   L++KSL      D+L    VK D  ++  +D +T  +L    T GIFQLES 
Sbjct: 483 LRTLTEIQLIEKSLEENQKFDYL----VKSDPQIL--NDPKTLTMLNLGFTEGIFQLESP 536

Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
           GM++ ++ +  +  +D+ A++SL+RPGP+D I  Y   K  ++ I  IHP  D ++  T 
Sbjct: 537 GMKKTIQKVVLNSFDDLYAIISLFRPGPMDFINDYATNKKNQKLIKKIHPDYDKVVANTY 596

Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
           G+I+YQEQ+MQIAQ + G + ++AD+LR+A+ KK + ++ K +  F   A K GI++ I 
Sbjct: 597 GIIVYQEQIMQIAQSIGGMTFAQADLLRKAISKKSEVDIKKYRSIFFENAIKKGINEKII 656

Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
             I+  + KF  YGFNKSHA +YA ++ + ++ K  Y   F ++ +T        I K+ 
Sbjct: 657 NAIYNNIEKFGLYGFNKSHAVSYAYLTMKMSYYKARYANLFYSSLITNAAGAQATINKYV 716

Query: 807 QDARQFNIQIMPPSV---NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPF 862
            + ++ N  +  P++   +  C+   V ++ IY     IKG G      I+ + + + PF
Sbjct: 717 AEIKKLNFPVYSPNILHSSNKCI---VTNDGIYLPFEMIKGFGAEGVNKIVADLNENGPF 773

Query: 863 D-SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             +L D   R+    +    +E L+ A A   FG+  M+ + S DN
Sbjct: 774 QKNLIDTMLRLRFAGIKDAAMEILIKANAFRDFGH--MKYILSCDN 817



 Score = 41.2 bits (95), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 17/106 (16%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +V+L   S Y+ L+  + +++++        PA+ ++D NN+F    F +      I+ I
Sbjct: 4   YVNLYNTSEYTFLDSLIRIDDLVRLSKEHNLPAVVLSDRNNMFGLGVFMEACLKYDIKGI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           IG  LD+   DN +               ++L    +GYQ++ +L+
Sbjct: 64  IGVDLDV---DNYRF--------------IVLAKNYQGYQKINQLI 92


>gi|218667676|ref|YP_002426285.1| DNA polymerase III, alpha subunit, putative [Acidithiobacillus
            ferrooxidans ATCC 23270]
 gi|218519889|gb|ACK80475.1| DNA polymerase III, alpha subunit, putative [Acidithiobacillus
            ferrooxidans ATCC 23270]
          Length = 1015

 Score =  353 bits (906), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 288/1018 (28%), Positives = 465/1018 (45%), Gaps = 89/1018 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+ S L GA ++ ++LD+  A    A+AIT+  +L SA      AC  G  
Sbjct: 2    PEYAELHCLSALSFLRGASAVEDLLDRAQALGYRALAITEECSLGSAARAHSHACNIGFP 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  I + D               P IVLLV   +GY  L   ++R      GK  
Sbjct: 62   LILGSE--IALTDG--------------PRIVLLVQEHDGYVALSRFITRARG-RAGKGH 104

Query: 129  VRICLSWLQE-IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             +  ++ L E +G   +I+       P  ++  F+ +     R      L  + +++  +
Sbjct: 105  YQARMADLPELVGCLAIIL-------PDSQSLRFDVAGAIAVR----DCLGAENVWLGAE 153

Query: 188  RHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
              RG D   +  +V++      +P +A  +            DVL A+     ++     
Sbjct: 154  LLRGGDDAAQLREVLEQGRALNIPCLACGDVHMDRRSRRFLQDVLTAIRLRRPLADLGWA 213

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +L+ RS +  I+   PE L  T+ +A RC F L     ++ R+ +  C   Q 
Sbjct: 214  LARNGERHLRPRSVLAEIYP--PELLVETLRVAERCQFSLD---SLVYRYPDGACPADQ- 267

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            + ++ L   A  GL+ R  QG       A     +L+ EL ++  + ++GYFL V D ++
Sbjct: 268  QRDDYLAELARQGLQRRYPQGV------ATVVATQLEAELALVRELDYAGYFLTVHDIVR 321

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK   I +  GRGS A SV  YAL IT++DP R  LLF RF++ DR   PD D+DF  +
Sbjct: 322  FAKGRGI-LCQGRGSAANSVICYALGITEVDPSRMQLLFARFISRDRREPPDIDVDFEHE 380

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV   YG +  A   T    + ++A+RD  RAL     ++ RL + +      
Sbjct: 381  RREEVIQYVFQHYGRDHAALTATIIHYRPRSAMRDAARALGFAPVEIQRLTQGL------ 434

Query: 486  PVSLQAIADDSRFREARLAD-------PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                 A  D  + R  RL +       P++ RL+ +   L G  RH S H  G+V+   P
Sbjct: 435  -----AWWDGRQIRPERLQEQGFDPTSPTIQRLVTVVNALVGFPRHLSQHVGGMVLSATP 489

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            L+ LVP+     ++  V Q++   ++  G++K D L L  L++L+++LD L      + L
Sbjct: 490  LNALVPIEPAAMAERAVIQWDKDDLDVLGILKVDILALGMLSVLRRALDDLG-----MTL 544

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
            + IP +D  TY +L    +LG+FQ+ES      L  ++P C  D++  V++ RPGPI  D
Sbjct: 545  ADIPAEDPATYAMLQRGESLGVFQVESRAQMSMLPRLKPRCFYDLVIEVAIIRPGPIQGD 604

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+ G E +    P +  +L+ T GV I+QEQVMQIA   +G+S  EAD LRRA
Sbjct: 605  MVHPYLRRRQGLEPVRYPGPEVKKVLERTLGVPIFQEQVMQIAIDAAGFSGDEADGLRRA 664

Query: 717  MGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M   + K  +    +R I G    G S+  A  + + +  FA+YGF +SHAA++A++ Y 
Sbjct: 665  MAAWRRKGHLGPYSDRLIRGLRLRGYSEAFAQRLCQQIQGFAEYGFPESHAASFALLVYA 724

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            +AW+K H+P  F AA +  +        +  Q+AR+  ++++   +     D KV D  +
Sbjct: 725  SAWIKCHHPAIFAAALLNSQPMGFYAPAQIVQEARRCGVEVLSVDICHSDWDCKVQDGAL 784

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  IKG+    A  ++   A     +L     R     L+   L  L +AGAL    
Sbjct: 785  RLGLCLIKGMSPKEAERLLHWRAQG--GALHSEALR-HGLGLSAAALHQLAYAGALSSLH 841

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R Q L ++         +      +                       E S+     +
Sbjct: 842  GDRHQALWAVQGSLPLPTALPMPVVPEQA----------------PALPAETSAAACIAD 885

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             + LG     HPL   +  + + G +   E          RLA +V  +Q+  T  G+
Sbjct: 886  YQQLGLSLGPHPLHFLRERIAQSGYRRIAEVRLQHHDRPDRLAGLVTHRQRPGTAHGT 943


>gi|296120119|ref|ZP_06838673.1| error-prone DNA polymerase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967273|gb|EFG80544.1| error-prone DNA polymerase [Corynebacterium ammoniagenes DSM 20306]
          Length = 1052

 Score =  353 bits (906), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 247/785 (31%), Positives = 384/785 (48%), Gaps = 84/785 (10%)

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +L++  +M+++  D  E +  TVE+A   +F     AP LP      CD  +  +E   
Sbjct: 267  QWLRSGQQMLTLMPDRGEEIAYTVELAHELAFTWDALAPNLP-----HCDVPEGFDEMSW 321

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
              + V     R  +   A     +  +Q+++ EL VI ++ F GYFLIV D + +  ++N
Sbjct: 322  LRELV---RQRAPERYRAHPRSWEKAQQQIEHELAVIEKLGFPGYFLIVTDIVDFCARSN 378

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I +  GRGS A SV  + L IT+ +P+   LLFERFL+PDR   PD D+D    RR+EVI
Sbjct: 379  I-LCQGRGSAANSVVCFVLGITNAEPISAQLLFERFLSPDRDGPPDIDVDIESGRREEVI 437

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YV + YG +R AQ+    + + K ALRD  RAL  P    D   K I            
Sbjct: 438  QYVYSFYGRDRAAQVANVITYRRKGALRDAARALGYPQGAGDAWSKGI------------ 485

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                        A+P  D + E+++K  G  RH   H+ G+V+ DRP++ +VPM      
Sbjct: 486  ------------AEPPED-VSELAEKFRGQPRHLGIHSGGMVLCDRPIADVVPMEWARME 532

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYH 610
            D  V Q++      AGL+KFD LGL  L  +   +D + + RG  ++L  +   D   Y 
Sbjct: 533  DRSVLQWDKDDCAAAGLVKFDLLGLGMLEAIHHMVDLVKETRGKTINLWELDLADPGVYA 592

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGK 668
            +L+    +G+FQ+ES      L  ++P    D++  V+L RPGPI    V  Y  R+NG+
Sbjct: 593  MLSRADAVGVFQVESRAQLATLPRLKPRRFFDLVVEVALIRPGPIQGGSVHPYLRRRNGE 652

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDK 727
            E+I   HP+++  L +T G+ ++QEQ+MQIA   +G+S +EAD LRRAMG K+  + M+ 
Sbjct: 653  EEITYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFSGAEADELRRAMGSKRSPQRMEA 712

Query: 728  QKERFISG-ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             ++RF +G    N I   +A+ ++  +  FA YGF +SHA ++A + Y +AW K  YP E
Sbjct: 713  LRQRFFNGLWETNQIDGEVALTLWNKIVAFAAYGFPESHAQSFASLVYFSAWFKCFYPAE 772

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------GDN--RIYY 837
            F    +  +       +   QDAR+  ++I+P  VN    + ++       GD+   I  
Sbjct: 773  FCVGLLRAQPMGFYSPQSLIQDARRHGVRILPVDVNASGTEARIEKHSGKNGDDDFAIRI 832

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  ++G+   T R       D P+  + D   R D   L    LE+L  AGALD FG S
Sbjct: 833  GLNLVEGLSKVTDR----IEEDAPYKDMADLARRAD---LTTAHLEALAKAGALDGFGLS 885

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R Q L +       A+     R      +   E         +E  + + S+        
Sbjct: 886  RRQALWN-------ARVAATEREGMLPGLTITEAPALPGMSLMELVATDISAT------- 931

Query: 958  VLGFYFSGHPLDVYKP--ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
              G   +  P+ + +P  +L    +K  E+      G+ IR+A +V  +Q+ +T  G   
Sbjct: 932  --GVTHNLQPMQLIRPPGVLTAAELKTAED------GSRIRVAGIVTHRQRPQTASG--- 980

Query: 1016 GWVTF 1020
              VTF
Sbjct: 981  --VTF 983



 Score = 45.1 bits (105), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 15/120 (12%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F  L   S YS L GA     I+++       A+AI D +  +  ++F++ A    +  +
Sbjct: 52  FAELHATSCYSFLTGASEPEEIVERAVELGLEAVAIVDRDGFYGLMKFAEAAALQNLPTV 111

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L +           G+ P      ++ L    EGY+RL  LV++  ++ + K  VR
Sbjct: 112 YGVELSL-----------GEKP----TGLLALARGPEGYRRLSRLVAQARMVTKEKDEVR 156


>gi|313678740|ref|YP_004056480.1| DNA polymerase III subunit alpha [Mycoplasma bovis PG45]
 gi|312950242|gb|ADR24837.1| DNA polymerase III, alpha subunit [Mycoplasma bovis PG45]
          Length = 977

 Score =  353 bits (906), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 205/563 (36%), Positives = 322/563 (57%), Gaps = 7/563 (1%)

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
           R+++E +VI  + F  YFLI++D I++A  N+I +GPGRGS +GS+ ++ L IT I+PL+
Sbjct: 253 RINYECSVIKELGFVNYFLIISDMIEYADANDISIGPGRGSASGSLISFLLGITKINPLK 312

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
           ++LLFERFLN D++S PD DID   DRRDE+  Y+Q+KYGH RVA I TF ++  K A+R
Sbjct: 313 YNLLFERFLNVDKVSWPDIDIDIQDDRRDEIFTYLQSKYGHNRVAVISTFQTMGVKQAIR 372

Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
           DVGR L +P + ++R+ K I     +    +  A +  F +        ++ +    KL+
Sbjct: 373 DVGRMLDIPLADINRISKSINAFANYSSIEEEFAKNLVFNKEVSLIKEYEKFVNHVSKLQ 432

Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
           GL R    HAAG++I D+ LS+ VP++ +  S L V Q  M+++E  GL+K D LGLKTL
Sbjct: 433 GLPRQYGIHAAGLIISDKDLSEYVPVFENANSFLQV-QVPMEFVEDFGLLKIDLLGLKTL 491

Query: 580 TLLQKSLDFLAQRGVKVDLSL---IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
           T ++     +++  +  +L     +   D    +LL    T G+FQ+ESSGM+  ++ + 
Sbjct: 492 TEIKHIEKRISKNKLFDELVYENDLELQDPMAINLLNNGNTEGLFQIESSGMKNTIKKVG 551

Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
               ED+ A++SLYRPGP + I  Y N +     I  I P  D ++  T G+IIYQEQ+M
Sbjct: 552 IQNFEDLFAIISLYRPGPKEYIKDYANNRRDPSLIEKIDPTYDEIVAPTHGIIIYQEQIM 611

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           +IAQ ++  S ++AD+LRRA+ KK + E+ K +  F  G  KN  S      I++ + KF
Sbjct: 612 EIAQAVAKMSFAQADLLRRAISKKNEVELHKYRNTFFKGGLKNNFSLDSLEKIYDKIEKF 671

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
           A YGFNKSHA +YA ++ + A+ K  YP  + ++ ++    +  KI  F  + +  N  +
Sbjct: 672 AQYGFNKSHAVSYAYLTMKMAYYKARYPQVYFSSLISNSYGDQTKIASFVNELKNMNFSV 731

Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI-MEASADKPFDSLEDF--CSRVD 873
             P++        V +  IY     IKG+GT + R I ++   +  +  L  F    R+ 
Sbjct: 732 YSPNITHFTNSAIVDNGDIYLPFNMIKGLGTESIRKIALDIKENGEYKDLSIFEILLRLR 791

Query: 874 SKKLNRRVLESLVFAGALDCFGY 896
              L   ++ +L+ A     FG+
Sbjct: 792 FAGLKNSIISTLIRANVFRDFGF 814



 Score = 45.1 bits (105), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+ L   + YS LE  + + +++     + + A+ ++D NNLF+  EF ++     I+PI
Sbjct: 4   FIDLYNTTEYSFLESLIKVKDLVRLSKENGKKAVVLSDHNNLFALGEFLKQCNIYDIKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
           IG  LD++      +  +    F  + S++L  S+ E
Sbjct: 64  IGIDLDVE-DSRFILLAKNYDGFKLINSLILKKSSQE 99


>gi|71907571|ref|YP_285158.1| DNA polymerase III, alpha subunit [Dechloromonas aromatica RCB]
 gi|123760519|sp|Q47EP3|DNAE2_DECAR RecName: Full=Error-prone DNA polymerase
 gi|71847192|gb|AAZ46688.1| error-prone DNA polymerase, DnaE-like protein [Dechloromonas
           aromatica RCB]
          Length = 1027

 Score =  353 bits (906), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 274/913 (30%), Positives = 436/913 (47%), Gaps = 79/913 (8%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA     +  +  A    A+A+TD  +L   +     A   G++
Sbjct: 4   PEYAELHCLSNFSFLRGASHPEELAARALAQGYAALALTDECSLAGVVRAHLAAKKHGLK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I+G ++         MT  G         +V L     GY  L  L++ +      K  
Sbjct: 64  FIVGSEM---------MTVDGL-------KLVFLACNRHGYGNLSALIT-LARRRAEKGG 106

Query: 129 VRICLSWLQEIGTEG-----LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             +  + L+ I   G     L++   G           N+   A+   L  +  F  R +
Sbjct: 107 YTLHRNDLESISPSGALPDCLVLWVPG-----------NNPSSADGEWLVSR--FPGRSW 153

Query: 184 VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           + ++ H G  D  R + +  L     LPLVAT +     +      DVL A+   + V +
Sbjct: 154 IAVELHAGPEDAERLAGLQSLGEVCGLPLVATGDVHMHIKARRPVQDVLTALRLKSTVFE 213

Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-----QVHAPILPRFIE 297
                + P+     RS +       PE L  T+ IA RC F+L     +    I+P   E
Sbjct: 214 AGYA-LFPNGERHLRSRLRLSRLYPPELLAETLNIAARCEFLLDELRYEYPEEIIPSG-E 271

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                ++ E E  L+ +  AG+      G++         R+R++ EL +IA M +  YF
Sbjct: 272 TPASWLRSETERGLQRRYPAGVP-----GSV---------RERIEHELGLIAEMAYEAYF 317

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           L V D + +A+  +I +  GRGS A S   YAL +T++DP R +LLFERF++ +R   PD
Sbjct: 318 LTVYDIVCYARSQDI-LCQGRGSAANSAVCYALGVTEVDPARSALLFERFVSKERGEPPD 376

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL-C 476
            D+DF  +RR++VI+Y+  KYG ER A      + + K ALRD GRAL    +Q++ L  
Sbjct: 377 IDVDFEHERREDVIQYIYTKYGRERAALAAALITYRTKGALRDAGRALGFGIAQINALTA 436

Query: 477 KLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            L   D    +         RF E  L    P V++ L I++ L G  RH + H  G VI
Sbjct: 437 SLAWWDKREQLP-------ERFAELGLDPHAPRVEKWLAIAEALRGFPRHLTQHVGGFVI 489

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
              PLS+LVP+     S   V Q++   ++  GL+K D L L  L+ +++ L  + +  G
Sbjct: 490 SRGPLSRLVPVENAAMSARSVIQWDKDDLDAMGLMKVDILALGMLSAIRRMLQIVGETTG 549

Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             + +  IP +D  TY +L    ++G+FQ+ES      L  ++P    D++  V+L RPG
Sbjct: 550 RPMKMQDIPAEDPATYEMLCHADSMGVFQVESRAQMAMLPRLRPQNFYDLVVEVALVRPG 609

Query: 654 PI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           PI  D +  Y  R+ G+E+I  I P +D +L+ T GV I+QEQVMQ+A + + ++  EAD
Sbjct: 610 PIQGDMVHPYLKRRQGRERIEEISPAVDAVLERTYGVPIFQEQVMQLAVVAANFTPGEAD 669

Query: 712 VLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            LRRAM   K K  ++  +++ ++G + N + ++ A  I   +  F +YGF +SHAA++A
Sbjct: 670 QLRRAMAAWKRKGGLEPFEQKLLAGMAANDLPESFARRIIAQIQGFGEYGFPESHAASFA 729

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
           ++ Y +AW+K H+P  FL   +  +           QDAR+  ++++PP V T   D ++
Sbjct: 730 LLVYASAWLKRHHPAAFLCGLLNSQPMGFYSPSMLIQDARRHGVRVLPPDVMTSDWDSRL 789

Query: 831 GDNR--IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            D R  +   L  I G     A+ I      ++PF ++ D  +R     L RR L+ L  
Sbjct: 790 -DERGAVRLGLREISGFSVAAAKRITAVCRENQPFLNVADLAARAG---LQRRDLDLLAA 845

Query: 888 AGALDCFGYSRMQ 900
             AL      R Q
Sbjct: 846 GDALQGLAGHRRQ 858


>gi|331008498|gb|EGH88554.1| error-prone DNA polymerase [Pseudomonas syringae pv. tabaci ATCC
            11528]
          Length = 1031

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 287/1040 (27%), Positives = 470/1040 (45%), Gaps = 113/1040 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + ++       A+AITD   L   +   Q + + G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFERALRHGYQALAITDECTLAGIVRAWQASISTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-----------RM 119
            IG ++ I+                  P  VLLV +  GY+ L +L++           R+
Sbjct: 65   IGSEMHIE----------------NGPKAVLLVESQTGYEALCKLITVARRRARKGEYRL 108

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
               D       +   WL EI  +    L  G                        ++ F 
Sbjct: 109  LREDFEPSPDGLLAIWLPEIEGDAQACLAHGR---------------------WLRERFA 147

Query: 180  DRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +RL++ ++ HRG D   R + ++ LA +  +P VA+ +    +       D + A+ H T
Sbjct: 148  ERLWLGVELHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHT 207

Query: 239  VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V++         + +L+    +   + D    L  +V IARRC+F L+      P    
Sbjct: 208  TVAEAGHLLFANGERHLRPLDALAEHYPDW--LLAESVRIARRCTFDLKQLKYEYP---- 261

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E     +   + LR     G   R   G           R +++ EL +I   KF  YF
Sbjct: 262  HELVPKGQTPTSWLRELTERGARKRWPNGLTPA------TRAQVEKELALITEKKFDSYF 315

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D +++A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD
Sbjct: 316  LTVHDIVEFARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERNEPPD 374

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  DRR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L  
Sbjct: 375  IDVDFEHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAVRDVAKVLGLPPDQINALAD 434

Query: 478  LIPNDPAHPVSLQAIADDSRFREARL-AD-PSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                  A      ++    R RE    AD P + R+L ++ +L G  RH S H  G VI 
Sbjct: 435  ------AFSRWSDSLPPPERLREYGFDADMPILKRVLALTGELIGFPRHLSQHPGGFVIS 488

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594
            + PL  LVP+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG 
Sbjct: 489  EHPLETLVPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGK 548

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +  L+ +P DD +TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGP
Sbjct: 549  RWTLADLPGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGP 608

Query: 655  IDNIVVYNN-RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            I   +V+   R+  KE+ ++  P +  + + T GV ++QEQVM++A + +GY+  EAD L
Sbjct: 609  IQGDMVHPYLRRRNKEEAITYPPKLKSVFERTLGVPLFQEQVMEVAIIAAGYTPGEADEL 668

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM   K    ++  +ER  +G  KNG     A  IFE +  F  YGF +SHAA++A++
Sbjct: 669  RRAMAAWKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALL 728

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG- 831
            +Y + W+K H P  F  A +           +  QDAR+ +I+I P  V     D  +  
Sbjct: 729  TYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEP 788

Query: 832  --------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                    +  I   L  ++G     AR I  A + + F    D   R     L+ R  E
Sbjct: 789  LDHPDSTRNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLSLRAG---LDARAAE 845

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            +L  +GA           L+ L   +  A+W E         +F ++  +   ++TL   
Sbjct: 846  ALADSGA-----------LRGLIGHRHRARW-EVAGVEAQRPLF-NDLPSEDTQVTLPLP 892

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR---LAAM 1000
            +V         +   LG     HPL + +   R++  K +  S   +   N R   +A +
Sbjct: 893  TVAED---LMADYATLGTTLGPHPLALLR---RQLAAKRFRSSQDLLSLENDRTLSVAGL 946

Query: 1001 VVSKQQKKTRKGSRIGWVTF 1020
            V+ +Q+  T  G     VTF
Sbjct: 947  VIGRQRPGTASG-----VTF 961


>gi|198283654|ref|YP_002219975.1| DNA polymerase III subunit alpha [Acidithiobacillus ferrooxidans ATCC
            53993]
 gi|198248175|gb|ACH83768.1| DNA polymerase III, alpha subunit [Acidithiobacillus ferrooxidans
            ATCC 53993]
          Length = 1020

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 288/1018 (28%), Positives = 465/1018 (45%), Gaps = 89/1018 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+ S L GA ++ ++LD+  A    A+AIT+  +L SA      AC  G  
Sbjct: 7    PEYAELHCLSALSFLRGASAVEDLLDRAQALGYRALAITEECSLGSAARAHSHACNIGFP 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G   +I + D               P IVLLV   +GY  L   ++R      GK  
Sbjct: 67   LILGS--EIALTDG--------------PRIVLLVQEHDGYVALSRFITRARG-RAGKGH 109

Query: 129  VRICLSWLQE-IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             +  ++ L E +G   +I+       P  ++  F+ +     R      L  + +++  +
Sbjct: 110  YQARMADLPELVGCLAIIL-------PDSQSLRFDVAGAIAVR----DCLGAENVWLGAE 158

Query: 188  RHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
              RG D   +  +V++      +P +A  +            DVL A+     ++     
Sbjct: 159  LLRGGDDAAQLREVLEQGRALNIPCLACGDVHMDRRSRRFLQDVLTAIRLRRPLADLGWA 218

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +L+ RS +  I+   PE L  T+ +A RC F L     ++ R+ +  C   Q 
Sbjct: 219  LARNGERHLRPRSVLAEIYP--PELLVETLRVAERCQFSLD---SLVYRYPDGACPADQ- 272

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            + ++ L   A  GL+ R  QG       A     +L+ EL ++  + ++GYFL V D ++
Sbjct: 273  QRDDYLAELARQGLQRRYPQGV------ATVVATQLEAELALVRELDYAGYFLTVHDIVR 326

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK   I +  GRGS A SV  YAL IT++DP R  LLF RF++ DR   PD D+DF  +
Sbjct: 327  FAKGRGI-LCQGRGSAANSVICYALGITEVDPSRMQLLFARFISRDRREPPDIDVDFEHE 385

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV   YG +  A   T    + ++A+RD  RAL     ++ RL + +      
Sbjct: 386  RREEVIQYVFQHYGRDHAALTATIIHYRPRSAMRDAARALGFAPVEIQRLTQGL------ 439

Query: 486  PVSLQAIADDSRFREARLAD-------PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                 A  D  + R  RL +       P++ RL+ +   L G  RH S H  G+V+   P
Sbjct: 440  -----AWWDGRQIRPERLQEQGFDPTSPTIQRLVTVVNALVGFPRHLSQHVGGMVLSATP 494

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            L+ LVP+     ++  V Q++   ++  G++K D L L  L++L+++LD L      + L
Sbjct: 495  LNALVPIEPAAMAERAVIQWDKDDLDVLGILKVDILALGMLSVLRRALDDLG-----MTL 549

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
            + IP +D  TY +L    +LG+FQ+ES      L  ++P C  D++  V++ RPGPI  D
Sbjct: 550  ADIPAEDPATYAMLQRGESLGVFQVESRAQMSMLPRLKPRCFYDLVIEVAIIRPGPIQGD 609

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+ G E +    P +  +L+ T GV I+QEQVMQIA   +G+S  EAD LRRA
Sbjct: 610  MVHPYLRRRQGLEPVRYPGPEVKKVLERTLGVPIFQEQVMQIAIDAAGFSGDEADGLRRA 669

Query: 717  MGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M   + K  +    +R I G    G S+  A  + + +  FA+YGF +SHAA++A++ Y 
Sbjct: 670  MAAWRRKGHLGPYSDRLIRGLRLRGYSEAFAQRLCQQIQGFAEYGFPESHAASFALLVYA 729

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            +AW+K H+P  F AA +  +        +  Q+AR+  ++++   +     D KV D  +
Sbjct: 730  SAWIKCHHPAIFAAALLNSQPMGFYAPAQIVQEARRCGVEVLSVDICHSDWDCKVQDGAL 789

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  IKG+    A  ++   A     +L     R     L+   L  L +AGAL    
Sbjct: 790  RLGLCLIKGMSPKEAERLLHWRAQG--GALHSEALR-HGLGLSAAALHQLAYAGALSSLH 846

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R Q L ++         +      +                       E S+     +
Sbjct: 847  GDRHQALWAVQGSLPLPTALPMPVVPEQA----------------PALPAETSAAACIAD 890

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             + LG     HPL   +  + + G +   E          RLA +V  +Q+  T  G+
Sbjct: 891  YQQLGLSLGPHPLHFLRERIAQSGYRRIAEVRLQHHDRPDRLAGLVTHRQRPGTAHGT 948


>gi|28869981|ref|NP_792600.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato
            str. DC3000]
 gi|71151834|sp|Q881T7|DNAE2_PSESM RecName: Full=Error-prone DNA polymerase
 gi|28853226|gb|AAO56295.1| DNA polymerase III, alpha subunit, putative [Pseudomonas syringae pv.
            tomato str. DC3000]
          Length = 1031

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 283/1046 (27%), Positives = 473/1046 (45%), Gaps = 125/1046 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + D+       A+AITD   L   +   Q +   G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFDRALRHGYAALAITDECTLAGIVRAWQASKDTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-----------RM 119
            +G ++ ++                  P IVLLV    GYQ L  L++           R+
Sbjct: 65   VGSEMHLE----------------NGPKIVLLVENLTGYQALCTLITVARRRAKKGEYRL 108

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             L D       +   WL +I  +    L  G+                       ++ F 
Sbjct: 109  LLEDFDHLPGGLLAIWLADIEGDAQACLAQGN---------------------WLRERFA 147

Query: 180  DRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +RL++ ++ HRG D   R + ++ LA +  +P VA+ +    +       D + A+ H T
Sbjct: 148  ERLWLGVELHRGADDEQRLADLLALAQSLAIPAVASGDVHMHARGRRALQDTITAIRHHT 207

Query: 239  VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI---LQVHAP--IL 292
             V++         + +L++   +   + D    L  ++ IARRC+F    LQ   P  ++
Sbjct: 208  TVAEAGHLLFANGERHLRSLDALAEHYPDW--LLAESLRIARRCTFTFDQLQYEYPHELV 265

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P+  +     +++  E  +R +   GL V                R +++ EL +I   K
Sbjct: 266  PKG-QTSTSWLRELTERGIRRRWPRGLSV--------------AARAQVEKELALITEKK 310

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F  YFL V D +++A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R
Sbjct: 311  FDSYFLTVHDIVEFARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISKER 369

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
               PD D+DF  DRR+EVI+Y+  +YG  R A      +     ALRDV + L +P  Q+
Sbjct: 370  DEPPDIDVDFEHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGALRDVAKVLGLPPDQI 429

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAA 530
            + L        A      ++    R RE       P + R+L ++ +L G  RH S H  
Sbjct: 430  NALAD------AFSRWSDSLPSPERLREYGFDAETPILKRVLALTGELIGFPRHLSQHPG 483

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G VI + PL  LVP+     ++  + Q++   ++  GL+K D L L  L+ L+++ D + 
Sbjct: 484  GFVISEHPLDTLVPVENAAMAERTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVH 543

Query: 591  -QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
              RG +  L+ +P DD  TY +++   T+G+FQ+ES      L  ++P+   D++  V++
Sbjct: 544  LHRGKQWTLASLPGDDRPTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAI 603

Query: 650  YRPGPIDNIVVYNN-RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             RPGPI   +V+   R+  KE+ ++  P +  + + T GV ++QEQVM++A + + Y+  
Sbjct: 604  VRPGPIQGDMVHPYLRRRNKEEAITYPPKLKSVFERTLGVPLFQEQVMEVAIIAADYTPG 663

Query: 709  EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EAD LRRAM   K    +D  +ER  +G   NG     A  IFE +  F  YGF +SHAA
Sbjct: 664  EADQLRRAMAAWKRHGGLDPHRERLRTGMLANGYDADFADRIFEQIKGFGSYGFPESHAA 723

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++A+++Y + W+K H P  F  A +           +  QDAR+ +I+I P  V     D
Sbjct: 724  SFALLTYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSHWD 783

Query: 828  FKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
              +          +  I   L  ++      A  I  A + +PF    D   R     L+
Sbjct: 784  CTLEPLDHPDSTRNLAIRLGLRMLRSFREEDALRIEAARSKRPFADATDLAQRA---GLD 840

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW----VEKNRTNKHENIFAHEKGTF 934
             R  E+L  +GA           L+ L   +  A+W    VE  R    +++ + E    
Sbjct: 841  SRAAEALADSGA-----------LRGLIGHRHRARWEVAGVEAQRP-LFDDVTSEEV--- 885

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
              ++TL   +V    V    +   LG     HPL + +  L     +  ++ ++      
Sbjct: 886  --QVTLPLPTVAEDLV---ADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENNRT 940

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            + +A +V+ +Q+  T  G     VTF
Sbjct: 941  LSVAGLVIGRQRPGTASG-----VTF 961


>gi|260579156|ref|ZP_05847047.1| error-prone DNA polymerase [Corynebacterium jeikeium ATCC 43734]
 gi|258602702|gb|EEW15988.1| error-prone DNA polymerase [Corynebacterium jeikeium ATCC 43734]
          Length = 867

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 260/839 (30%), Positives = 400/839 (47%), Gaps = 95/839 (11%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA- 64
           E +  F  L   S+Y+ L GA     +++        A+A  D +  + A  F+      
Sbjct: 28  EATTPFAELHACSAYNFLRGASQPEQMVEAARELGLSALACVDRDGFYGAARFATAVAES 87

Query: 65  -AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            A +  + G +L +DM                   + +L    EGY RL  ++S   + D
Sbjct: 88  NADLATVFGAELSLDM------------------PLTVLCKGREGYTRLSRVISDARMAD 129

Query: 124 QGKQSVRI-CLSWLQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180
             K SVR   L  L E  G   L++L           + +  +Q+ +        LFG D
Sbjct: 130 PDKDSVRYPSLPQLAEAAGGHWLVLLD----------WRWADAQLVD--------LFGAD 171

Query: 181 RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            + V LQ      D  R  ++  LA  H L  + ++     + +        +A A + +
Sbjct: 172 NVVVELQHTMNPADADRNERLHALAVRHGLREIVSSAPTCATPKYSR-----LAGAKAAL 226

Query: 240 VSQKDRPRVTP------DHYLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQVHAP 290
             +KD     P        +L++  EM+ +  D   L  A+E +V++A  C+F L + AP
Sbjct: 227 RERKDMAAAEPTTHPVGGSWLRSGEEMLQLAGDCEWLARAVETSVQVAEECAFTLDLVAP 286

Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIA 349
            LP F   E       E   LR     G   R  Q G+ A    A      +D EL  I 
Sbjct: 287 NLPHFPVPE----GYTEMTWLRAITERGGAQRYGQRGSSAAANQAW---ATIDRELETIE 339

Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
           ++ F GYFLIV D + +  +NNI    GRGS A S   +AL IT +D +   LLFERFL+
Sbjct: 340 QLGFPGYFLIVHDIVSFCHENNI-FCQGRGSAANSAVCFALGITTVDAVASGLLFERFLS 398

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
           P+R   PD D+D    RR+E I+YV ++YG E  AQ+    + + + A RD GRAL    
Sbjct: 399 PERDGPPDIDLDIESGRREEAIQYVYSRYGRENAAQVANVITYRRRGATRDAGRALGYAP 458

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            Q+D   +   N    P ++Q           RLA+  +D             RH   H+
Sbjct: 459 GQIDAWTR---NPEQTPDAVQ-----------RLAEQMLDHP-----------RHLGIHS 493

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G+VI DRP++Q+VP          V Q++       GL+KFD LGL  L  L  ++D +
Sbjct: 494 GGMVICDRPIAQVVPTEWARMEGRSVVQWDKDDCAAVGLVKFDLLGLGMLEALHHAVDQV 553

Query: 590 -AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            A RG +V+L  +   + E Y +L+    +G+FQ+ES      L  ++P    D++  V+
Sbjct: 554 RAHRGREVELWRLDPTEPEVYAMLSRADAVGVFQVESRAQMSTLPRLKPRTFYDLVVEVA 613

Query: 649 LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
           L RPGPI    V  Y  R+NG E +   HP ++P L +T G+ ++QEQ+MQ+A   +G+S
Sbjct: 614 LIRPGPIQGGSVHPYIRRRNGLEPVTFDHPCLEPALTKTLGIPLFQEQLMQMAVDAAGFS 673

Query: 707 LSEADVLRRAMG-KKIKEEMDKQKERFISG-ASKNGISKTIAVNIFELLAKFADYGFNKS 764
            +EAD LRRAMG K+  ++M++ K+RF  G  +KNGI   +A  +++ +  FA YGF +S
Sbjct: 674 GAEADTLRRAMGSKRSPQKMERLKKRFYQGLEAKNGIRGAVADRLWDKIVAFASYGFPES 733

Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
           H+ ++A + Y +AW K HYP EF  A +  +       +    DAR+  ++++P  VN 
Sbjct: 734 HSQSFASLVYYSAWFKYHYPAEFCVALLRAQPMGFYSPQSLLADARRHGVEVLPVDVNA 792


>gi|219883035|ref|YP_002478199.1| DNA polymerase III, alpha subunit [Arthrobacter chlorophenolicus A6]
 gi|219862041|gb|ACL42382.1| DNA polymerase III, alpha subunit [Arthrobacter chlorophenolicus A6]
          Length = 1401

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 303/1101 (27%), Positives = 495/1101 (44%), Gaps = 194/1101 (17%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  H+ +S L+G   + ++  + A   Q A+AITD  +L  A  F++   AAGI+P
Sbjct: 2    AFVHLHNHTEHSSLDGLARIKSVAKRAAELGQTAMAITDHGSLAGAWRFTKACKAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQ----------------GKTPFPTVPSIVLLVSTAEGYQRLI 113
            IIG ++ + + D  +  ++                G T       + LL    +G++ L+
Sbjct: 62   IIGIEIYMSIGDRFERNSEIVDRNDDTTADADDGKGDTKEKRYEHLTLLARNEQGWKNLL 121

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI------------------ 155
             L ++    +      RI    L+E G EGLI+L+G  +GP+                  
Sbjct: 122  ALHNKAE--ESYWYKPRIDYKLLKEHG-EGLIILSGCLAGPVAGPLSRAAATKTASEQAA 178

Query: 156  ------------DRAFFFNS------------SQVAEKRLLTFKKLFG-DRLYVNLQRHR 190
                        D A   ++            +  A K L T     G + +Y+ +  H 
Sbjct: 179  AGALAAREANEEDEASKLDAEAQASLAKSAEFAAEARKNLDTLIDCVGKENVYLEIMYHS 238

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               ++     + QL+  +E+P+V TN+  +  E D   H+  +AV     +    R +  
Sbjct: 239  IEAEQSVLKPIGQLSREYEIPMVVTNDCHYEEEGDAHHHEGFLAVGSKKGLDDPARFKFN 298

Query: 250  -PDHYLKNRSEMVSI---FSDLPEALENTVEIARRCSF-ILQVHAPILPRFIEKECDDIQ 304
               +Y+K+ +EM+ I        +A   T  IA RC   ++      LP++   E     
Sbjct: 299  GSGYYVKSEAEMLDIKPGSKSWADACAMTQVIADRCDDQVIPTPHQRLPKYPLPEG---- 354

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAK--GYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                    +  V  L+  + +GAIA+     +Q+ + RL  EL++I  M F  YFLI+ D
Sbjct: 355  ------FTDSNVY-LKQLVKEGAIARYGSPLSQEVKDRLKTELDIIKDMGFPDYFLIMWD 407

Query: 363  FIQWAK--------------KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             I W +              K  I VGPGRGS AGS  +Y LTI  +DPL  +LLFERFL
Sbjct: 408  VINWCRSDAPIEFDNPDAPRKKPILVGPGRGSAAGSAVSYCLTIVGLDPLYNNLLFERFL 467

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ-- 466
             P R  MPD D+DF + RRDEV  Y+  ++G   VA+I TFG   +KAA++D  R L+  
Sbjct: 468  EPGRAGMPDIDVDFEKGRRDEVFAYLGYRWGKGNVARIGTFGVALSKAAIKDAARILKPS 527

Query: 467  MPYSQVDRLCK--LIPNDPAHPVSLQAIADDSRFREA----------------------- 501
             P  ++    K      D     SL   A+ +    A                       
Sbjct: 528  GPSEEIKAQAKEFFAAGDRGKGASLLREAEKAATERATQIMRLGNKMSDLVPASGEKAYD 587

Query: 502  --RLADP------------------SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
              +LADP                  ++D +LE+++  EG+ ++ S HA G V+   PL  
Sbjct: 588  FDQLADPKDQAGQAFRDLVEEAGQDALD-ILEMARSFEGVIKNESIHACGFVVSPEPLDD 646

Query: 542  LVPM------YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
            LVP+           +   V  ++   +E  G +K D LGL  L ++  +L+ +    G 
Sbjct: 647  LVPLRWASHAADADPAAPRVICWDGPEVEDYGFLKMDILGLMNLDIVATALENIEMTTGE 706

Query: 595  KVDLSLIPFDDHE-------TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            K+ +  +P  D +        + L+    T G+FQ+ES+GM +  + + P+ + DI A+V
Sbjct: 707  KLTMDDVPHPDTQGDPKVDAAFALIAAGNTGGVFQMESAGMVKIAQDVVPESLTDISAIV 766

Query: 648  SLYRPGPIDNIVV--YNNRKNGKEKI--------VSIHPLIDPMLKETQGVIIYQEQVMQ 697
            +L+RPGP+   V   Y  RKNG E++         +    I  +L +T GV ++QE +M+
Sbjct: 767  ALFRPGPLAAKVPDRYAARKNGLEEVDYNQFTADKTEQEWIAKVLGDTYGVFVFQESLMR 826

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN-----------GISKTIA 746
            +  ++SG+  S+  VLR+A+GKK  ++M +  E   +GA +              S   A
Sbjct: 827  LGTVISGFDASQRSVLRKAVGKKDAKKMAEVGEMLAAGAEQEFFDEDGAMISPKFSPKTA 886

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
             ++FEL+   A Y FN SH+AAYA +++ TA++K ++PVE+ AA + +   + +++  F 
Sbjct: 887  AHMFELMKGSASYLFNASHSAAYAQLAFVTAYLKANWPVEYAAAILAIADKDDKRMNAFW 946

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
               +   I ++ P +N         +  +   LA +K VG      + E   + PF +L 
Sbjct: 947  S-LKTDGITVLAPDINLSLARTAPVNGSVQMGLAEVKEVGVAGHYIVAERQKNGPFKNLH 1005

Query: 867  DFCSRV--------DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY------A 912
            D  +RV        +  KL    ++ L+ AGALD FG  R+ LL +L    K       A
Sbjct: 1006 DVLTRVTVPGKNGAEPTKLPVGAIQGLIEAGALDSFG-PRLGLLMTLRAAHKTELLPIDA 1064

Query: 913  QWVEKNRTNKHENIFAHEKGT 933
            +W +   + +         GT
Sbjct: 1065 EWSDVEESTRQRQRLGVSLGT 1085


>gi|300984944|ref|ZP_07177209.1| DNA polymerase III, alpha subunit [Escherichia coli MS 200-1]
 gi|300306594|gb|EFJ61114.1| DNA polymerase III, alpha subunit [Escherichia coli MS 200-1]
          Length = 460

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 195/468 (41%), Positives = 280/468 (59%), Gaps = 21/468 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   D ++Q 
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
           +L            +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 59  DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R  R  +       
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP  P 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPGPG 452


>gi|222148691|ref|YP_002549648.1| DNA polymerase III alpha chain [Agrobacterium vitis S4]
 gi|254777923|sp|B9JWL2|DNAE2_AGRVS RecName: Full=Error-prone DNA polymerase
 gi|221735677|gb|ACM36640.1| DNA polymerase III alpha chain [Agrobacterium vitis S4]
          Length = 1097

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 286/1026 (27%), Positives = 474/1026 (46%), Gaps = 88/1026 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV + +S L GA S   + +   +    AI + D N+L   +   + + A G++ +
Sbjct: 3    YAELQVTTHFSFLRGASSAIELFETAKSLGIDAIGVVDRNSLAGIVRALEASRATGVRLV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+LD  +QD +              SI++  +    Y RL  L++    L +G+    
Sbjct: 63   VGCRLD--LQDGM--------------SILVYPTDRTAYSRLARLIT----LGKGRGGKD 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RH 189
             C+  L +I   G  +L        D        ++AE        +FGD  Y++L  R 
Sbjct: 103  NCILMLDDIAQYGEGLLGILVPDLADDTCAVQLRKMAE--------VFGDLAYLSLCLRR 154

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK--DRPR 247
            R  D+ R  ++  +A   ++  V TN+ LF      +  D++  + ++T +     +R R
Sbjct: 155  RPNDQLRLHELSNMATRFKVKTVVTNDVLFHEPGRRQLQDIVTCIRNNTTIDTVGFERER 214

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK   EM  +F    +AL  T+EI  RC F L+      P    +E    +K  
Sbjct: 215  -HADRYLKPPEEMERLFPRYRQALRRTMEIVDRCKFSLEELTYQYP----EEAIVPRKTA 269

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L +     +  R  QG   K        Q +  EL++I +MK++ YFL V   +++A
Sbjct: 270  QESLEHYVWQCVPDRYPQGLPPKTL------QIIRHELDLIHKMKYAPYFLTVFSIVRFA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A S   Y L +T IDP   +LLFERF++ +R   PD D+DF  +RR
Sbjct: 324  RAKGI-LCQGRGSAANSAVCYILGVTSIDPETNNLLFERFVSQERDEPPDIDVDFEHERR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+++   YG E+ A   T    +AK A+RDVG+AL +P   +  L   +        
Sbjct: 383  EEVIQWIYKTYGKEKAALCATVNRYRAKGAIRDVGKALGLPEDLIKALSSGM-------W 435

Query: 488  SLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            S      D   RE  L +P   RL   L+++Q+L G  RH   H  G V+    L  LVP
Sbjct: 436  SWSQETSDRNVRELNL-NPDDRRLTLTLQLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVP 494

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +      D  + +++   +E    +K D L L  LT + K    + + +G  +DL+ I  
Sbjct: 495  IEPSTMEDRQIIEWDKDDVEALKFMKVDVLALGMLTCMSKVFALIREHKGDDLDLAKIRQ 554

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y
Sbjct: 555  EDKATYEMICKADTLGTFQIESRAQMAMLPRLKPKTFYDLVVQVAIVRPGPIQGDMVHPY 614

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R+  KE +    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M   K
Sbjct: 615  LRRREKKEDVDYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFK 674

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                + + KE+ +SG  KNG +   A   F  L  F  YGF +SHAA++A+I+Y + ++K
Sbjct: 675  FTGGVSRFKEKLVSGMVKNGYTPEFAEKTFSRLEGFGSYGFPESHAASFALIAYASNYVK 734

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVDFKVGDNR--- 834
             H+P  F AA +  +        +   DAR   +++ P  VN     C   ++G  +   
Sbjct: 735  CHFPDVFCAALLNSQPMGFYAPAQIVGDARAHGVEVRPVCVNRSRWDCTLERIGTTQQHA 794

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +   +  +KG+       I+ A  + PFDS++D   R            SLV     D F
Sbjct: 795  VRLGMRMVKGLVVADVARIVAARMNGPFDSVDDMWRRSGVPA------ASLVELAHADAF 848

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDK----ITLEKFSVE 946
                     SL   ++   W  K   ++   +FA     E  T +++    + L + +  
Sbjct: 849  Q-------PSLKLARRDVLWAIKALRDEPLPLFAAAAEREMKTIAEQNEPEVELRQMTKG 901

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            ++ V    +   +G     HP+   +  L K  I   EE++    G  +  A +V+ +Q+
Sbjct: 902  HNVV---EDYGHIGLTLRDHPIAFLRTDLAKRNIVTCEEAMTARDGRWVITAGLVLVRQK 958

Query: 1007 KKTRKG 1012
              + KG
Sbjct: 959  PGSAKG 964


>gi|16119329|ref|NP_396035.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str.
           C58]
 gi|71151851|sp|Q8UKK2|DNE22_AGRT5 RecName: Full=Error-prone DNA polymerase 2
 gi|15161845|gb|AAK90476.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str.
           C58]
          Length = 1085

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 264/879 (30%), Positives = 420/879 (47%), Gaps = 66/879 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           S+  LQV + +S L GA S   + +   A    AI + D N+L   +   + + A  I+ 
Sbjct: 2   SYAELQVTTHFSFLRGASSAQELFETAKALGIQAIGVVDRNSLAGIVRALEASRATDIRL 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           ++GC+LD  + D +              S+++  +    Y RL  L++    L + +   
Sbjct: 62  VVGCRLD--LTDGM--------------SLLVYPTDRAAYSRLTRLIT----LGKSRGGK 101

Query: 130 RIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             C L W      + +I  + G  G +              +L    + FGDR YV+L  
Sbjct: 102 NNCILHW------DDVIAYSRGMIGVLVPDL---PDATCAAQLRRIAEAFGDRAYVSLCL 152

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK--DR 245
           R R  D+ R  ++  LA   ++  V TN+ LF      +  D++  + H+T +     +R
Sbjct: 153 RRRQNDQMRLHEISNLAARFKVKTVVTNDVLFHEPGRRQLQDIVTCIRHNTTIDDVGFER 212

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R   D YLK   EM  +FS   EAL  T+EI RRC F L+      P    +E     K
Sbjct: 213 ER-HADRYLKPPEEMERLFSRYSEALARTLEIVRRCKFSLEELTYQYP----EEAIVPGK 267

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
           + +  L +        R  +G        QD  + +  EL++I  MK++ YFL V   ++
Sbjct: 268 DAQASLEHYVWECAPDRYPEGL------PQDVLKTVRHELDLIRTMKYAPYFLTVFSIVR 321

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +
Sbjct: 322 FARSQGI-LCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHE 380

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+++   Y  ++ A   T    +AK A+RDVG+AL +P   +  L   +      
Sbjct: 381 RREEVIQWIYKTYTKDKAALCATVTRYRAKGAIRDVGKALGLPEDVIKALSSGM------ 434

Query: 486 PVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
             S      D   RE  L +P   RL   L+++Q+L G  RH   H  G V+    L  L
Sbjct: 435 -WSWSEEVPDRNIRELNL-NPDDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDL 492

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
           VP+      D  + +++   +E    +K D L L  LT + K+ D + + +G ++DLS I
Sbjct: 493 VPIEPATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMAKAFDLIREHKGQQLDLSNI 552

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
             +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D + 
Sbjct: 553 EQEDAATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVH 612

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            Y  R+ GKE +    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M  
Sbjct: 613 PYLRRREGKEPVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMAT 672

Query: 720 -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K    + + K++ +SG  KNG S   A   F  L  F  YGF +SHAA++A+I+Y + +
Sbjct: 673 FKFTGGVSRFKDKLVSGMVKNGYSPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNY 732

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNR 834
           +K HYP  F AA +  +        +   DA +  +++ P  VN    D  +    G +R
Sbjct: 733 IKCHYPDVFCAALLNSQPMGFYAPAQIVGDAIKHGVEVRPVCVNRSRWDCTLERIEGSDR 792

Query: 835 --IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
             +      +KG+    A  I+ A  + PF S++D   R
Sbjct: 793 HAVRLGFRQVKGLAVADAARIVAARMNNPFASVDDMWRR 831


>gi|94499703|ref|ZP_01306240.1| putative DNA polymerase III alpha chain [Oceanobacter sp. RED65]
 gi|94428457|gb|EAT13430.1| putative DNA polymerase III alpha chain [Oceanobacter sp. RED65]
          Length = 1023

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 275/943 (29%), Positives = 446/943 (47%), Gaps = 95/943 (10%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL--EFSQKACAAGI 67
           S+  L   S++S L+GA     +  +    +  AIAITD  ++   +    + K  +  I
Sbjct: 2   SYAELFCQSNFSFLQGASHPEELAVQAEFLEYNAIAITDECSVAGVVRAHTAIKEHSLSI 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR--------M 119
           + I+G    +D              F     IVLL    + Y  L  ++S          
Sbjct: 62  KLIVGSYFILD-------------DF----HIVLLCPNRDAYAELCRIISNARRRSEKGQ 104

Query: 120 YLLDQGK-QSVRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KK 176
           Y LD+    S++ CL  WL                         N+S++       +  K
Sbjct: 105 YHLDRWDLMSIKHCLCLWLPNSSNN-------------------NASEMKNDYWAQWLNK 145

Query: 177 LFGDRLYVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
               R ++   RH   +     Q    L+ T +LP+VA    L  S      H VL A+ 
Sbjct: 146 YHKGRSWIACMRHLESNDAEHIQYCNTLSKTSDLPIVACGGVLMHSPNRQSLHHVLTAIR 205

Query: 236 HSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-----QVHA 289
           H T V      R++  +  L+  S++  ++   PE ++ ++ IA RC+F L     +  A
Sbjct: 206 HKTTVEDCQDGRLSNTERALRPISKIAKLYK--PEWIQESIRIAERCTFDLSELRYEYPA 263

Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
            ++P           K     LR+    G ++R  +G         D +Q +D EL +I 
Sbjct: 264 ELVPD---------NKSAMEHLRDLVKHGSQLRFPEGV------PSDIQQTIDKELTLIE 308

Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +K+  YFL + D + +AK+  I +  GRGS A SV  Y L IT +DP + S+LFERF++
Sbjct: 309 ELKYPYYFLTIHDLVMFAKRQKI-LFQGRGSAANSVVCYCLEITSVDPRQISVLFERFIS 367

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            +R   PD D+DF  +RR+EVI+Y+  KYG ER A   T  S + K A+RDVG+AL +  
Sbjct: 368 KERDEPPDIDVDFEHERREEVIQYIYGKYGRERTALAATVISYRLKMAIRDVGKALGLHE 427

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV--DRLLEISQKLEGLYRHAST 527
           SQ+D   K I          +++   S+  E  L   S    + + +  ++ G  RH S 
Sbjct: 428 SQLDFFIKNIFRRD------RSLNWQSQIMELGLNPESYKGQQFIHLVNEILGFPRHLSQ 481

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           H  G VI   PL +LVP+         V Q++   +E  GL+K D L L  LT ++K+  
Sbjct: 482 HVGGFVISRGPLYELVPVENAAMEARTVIQWDKDDLESLGLLKVDVLALGMLTAIRKAFS 541

Query: 588 FLAQRGVKVDLSLIPF----DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            + Q+  K  LS+       DD + Y ++    T+G+FQ+ES      L  ++P C  D+
Sbjct: 542 LIQQQH-KQSLSIAHITALGDDPDVYKMIQQADTVGVFQIESRAQMSMLPRLKPACYYDL 600

Query: 644 IALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
           +  +++ RPGPI   +V+    R+NG+E I      ++ +L  T GV I+QEQV+++A +
Sbjct: 601 VIQIAIVRPGPIQGDMVHPFLKRRNGEESIDYPSKEVEAVLSRTLGVPIFQEQVIKLAMV 660

Query: 702 LSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +G+S  EAD LRRAM   K   ++   +++ I+G  K G     A  ++  +  F +YG
Sbjct: 661 AAGFSGGEADQLRRAMASWKKTGKLKPFRDKLINGMQKRGYEAEFAERVYMQICGFGEYG 720

Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
           F +SH+A++AV++Y +AW+K +YP+EF AA +           +  QDA++  I I+P  
Sbjct: 721 FPESHSASFAVLAYVSAWLKYYYPLEFYAALLNSLPMGFYSASQLIQDAKRHGIHILPTC 780

Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
           VN    +  + D ++   L  I G+  + A+ I++    K +   ++  S      + R+
Sbjct: 781 VNHSQYEHIIEDRKMRLGLHMISGLSESAAQEIIKQRPSKGYQHTQELISL----HMTRK 836

Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            LESL  A AL     +R +    L N Q+YA  + K + N +
Sbjct: 837 DLESLASANALQAISGNRFETRWQLSN-QEYALPLLKEQCNHY 878


>gi|290961571|ref|YP_003492753.1| DNA polymerase III subunit alpha [Streptomyces scabiei 87.22]
 gi|260651097|emb|CBG74218.1| putative DNA polymerase III, alpha chain [Streptomyces scabiei 87.22]
          Length = 1174

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 294/1071 (27%), Positives = 480/1071 (44%), Gaps = 77/1071 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL+  S +SL  GA     + ++ +     A+A+TD + L  A+ F++    AGI+
Sbjct: 7    PGFTHLRTASGFSLRHGASHPERLAERASERGMDALALTDRDTLAGAVRFAKACAGAGIR 66

Query: 69   PIIGCQLDIDMQDNLKMTNQ-------GKTPFPTVPSIVLLV-STAEGYQRLIELVSRMY 120
            P+ G +L +++ +      +       G     + P +  L    A G+  L  +VS  +
Sbjct: 67   PLFGAELAVEVPEAAVRRARRRAPVRGGAFIDESTPRVTFLAREGATGWAELCRIVSAAH 126

Query: 121  L---LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
                   G   V   L W  E   EGL +L G  S  + RA        A K L+ +++ 
Sbjct: 127  ADSGPGGGGSEVPPLLPW-SESAAEGLTVLLGPGSD-VGRALAAGRPDRAAKLLVPWRER 184

Query: 178  FGDRLYVNLQRH----RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +GD L +    H     G    R  ++ V  A    +  V +N   +         DVL 
Sbjct: 185  YGDALRLEAVWHGREGTGPGSLRLAARTVGFAAEQRVRPVLSNAVRYADPGMGPVADVLD 244

Query: 233  AVAHSTVVSQKDRPRVTPDH---YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
            A      V     PR   D    +LK    M+ +   + EA     + A R   + Q  A
Sbjct: 245  AARRLVPVD----PRGELDSGEAWLKGADAMLGVAERVVEAAGFRRDTAHR--LLEQTRA 298

Query: 290  PILPRFIEKECDDI--------QKEEENELRNKAVAGLEVRLAQGAIAKGYHA-QDYRQR 340
                  ++ E DD+        +       R  A   L  R A G +  GY A + Y +R
Sbjct: 299  TAAECLVDPE-DDLGLGTVHFPEPRLVGAGRRTAQRALASRAAAGMVRHGYGARRAYWER 357

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            +  EL+VIA   F+ YFL VA  +   ++  I V   RGSGAGS+  + L I   DP+  
Sbjct: 358  MHQELDVIAHHGFASYFLTVAQVVDDVRRMGIRVA-ARGSGAGSLVNHLLDIAHADPVEH 416

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LL ERFL+  R+++PD DID    RR EV R +  ++G ERVA +    + + + A+RD
Sbjct: 417  GLLMERFLSKRRVALPDIDIDVESARRLEVYRAIIGRFGTERVATVAMPETYRVRHAVRD 476

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            VG AL +  + +DR+ K  P+  A      A+ +    R+         RL E+ + L+ 
Sbjct: 477  VGAALSLDPADIDRIAKSFPHIRARDAR-AALEELPELRQLAGEKQRYGRLWELVEALDA 535

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R  + H  G+++ D  L    P+       LP++QF+   +E  GL+K D LG++  +
Sbjct: 536  LPRGVAMHPCGVLLSDASLLSRTPVMPTSGEGLPMSQFDKDDVEDLGLLKLDVLGVRMQS 595

Query: 581  LLQKSLDFLAQ-RGVKVDLSLIPFD----DHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
             +  ++  +A+  G +VDL  + F+    D  TY L+ +  TLG FQ+ES G R  +  +
Sbjct: 596  AMAHAVAEVARATGERVDLDALDFERGAGDPATYELIRSTETLGCFQIESPGQRDLVGRL 655

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
            QP    D++  +SL+RPGP+  D +  +   ++G+  +   H  +   L+ET GV+++ E
Sbjct: 656  QPATFHDLVVDISLFRPGPVAADMVRPFIAARHGRAPVRYPHEDLAEPLRETYGVVVFHE 715

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            Q++ I  L++G    EAD +RR +     E   + +  F   A+  G         + ++
Sbjct: 716  QIIDIVHLMTGCGRDEADRVRRGLSD--PESQGRIRVWFAQHAAAKGYDAETIQRTWGIV 773

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              F  YGF K+HA A+AV +YQ+AW+KTH+P  F A  +T +     K +    DAR+  
Sbjct: 774  EAFGSYGFCKAHAVAFAVPTYQSAWLKTHHPAAFYAGLLTHDPGMYPK-RLLLADARRRG 832

Query: 814  IQIMPPSVN----TPCVDF-----KVGDNRIY---YSLAAIKGVGTTTARHIMEASADKP 861
            + ++P  VN      C++        G+ R +    +L+ + G+    A  I   +  +P
Sbjct: 833  VPVLPLDVNRSAVAHCIELVSESKGSGEERTWGIRLALSDVHGISEAEAARI---AGGQP 889

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + SL DF  R    + +R + + L   GALD FG +R  L   L  + + A+     +  
Sbjct: 890  YASLLDFWERA---RPSRPLAQRLAQVGALDAFGANRRDLQLHLTELHRGARGAGGGQ-- 944

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                      G  +    L   S   S+ R   E  VL    S + +D ++  L ++G+ 
Sbjct: 945  -----LPLAGGRRTAPAGLPDLS---SAERLSAELGVLSMDVSRNLMDDHRAFLDELGVV 996

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   T  G  + +A    + Q    R G R+ + T  +     +  FF
Sbjct: 997  SARRLRETRHGETVLVAGAKAATQTPPIRSGKRVVFTTLDDGTGLVDLAFF 1047


>gi|289629057|ref|ZP_06462011.1| error-prone DNA polymerase [Pseudomonas syringae pv. aesculi str.
            NCPPB3681]
 gi|289649726|ref|ZP_06481069.1| error-prone DNA polymerase [Pseudomonas syringae pv. aesculi str.
            2250]
 gi|330867026|gb|EGH01735.1| error-prone DNA polymerase [Pseudomonas syringae pv. aesculi str.
            0893_23]
          Length = 1031

 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 286/1040 (27%), Positives = 470/1040 (45%), Gaps = 113/1040 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + ++ +     A+AITD   L   +   Q + + G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASISTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-----------RM 119
            IG ++ I+                  P  VLLV +  GY+ L +L++           R+
Sbjct: 65   IGSEMHIE----------------NGPKAVLLVESQTGYEALCKLITVARRRARKGEYRL 108

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
               D    S  +   WL +I  +    L  G                        ++ F 
Sbjct: 109  LREDFEPSSDGLLAIWLPDIEGDAQACLAHGR---------------------WLRERFA 147

Query: 180  DRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +RL++ ++ HRG D   R + ++ LA +  +P VA+ +    +       D + A+ H T
Sbjct: 148  ERLWLGVELHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHT 207

Query: 239  VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V++         + +L+    +   + D    L  +V IARRC+F L+      P    
Sbjct: 208  TVAEAGHLLFANGERHLRPLDALAEHYPDW--LLAESVRIARRCTFDLKQLKYEYP---- 261

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E     +   + LR     G   R   G           R +++ EL +I   KF  YF
Sbjct: 262  HELVPKGQTPTSWLRELTERGARKRWPNGLTPA------TRAQVEKELALITEKKFDSYF 315

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D +++A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD
Sbjct: 316  LTVHDIVEFARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERNEPPD 374

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  DRR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L  
Sbjct: 375  IDVDFEHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAVRDVAKVLGLPPDQINALAD 434

Query: 478  LIPNDPAHPVSLQAIADDSRFREARL-AD-PSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                  A      ++    R RE    AD P + R+L ++ +L G  RH S H  G VI 
Sbjct: 435  ------AFSRWSDSLPSPERLREYGFDADMPILKRVLALTGELIGFPRHLSQHPGGFVIS 488

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594
            + PL  LVP+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG 
Sbjct: 489  EHPLETLVPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGK 548

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               L+ +P DD +TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGP
Sbjct: 549  LWTLADLPGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGP 608

Query: 655  IDNIVVYNN-RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            I   +V+   R+  KE+ ++  P +  + + T GV ++QEQVM++A + + Y+  EAD L
Sbjct: 609  IQGDMVHPYLRRRNKEEAITYPPKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADEL 668

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM   K    ++  +ER  +G  KNG     A  IFE +  F  YGF +SHAA++A++
Sbjct: 669  RRAMAAWKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALL 728

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG- 831
            +Y + W+K H P  F  A +           +  QDAR+ +I+I P  V     D  +  
Sbjct: 729  TYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEP 788

Query: 832  --------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                    +  I   L  ++G     AR I  A + + F    D   R     L+ R  E
Sbjct: 789  LDHPDSTRNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLTLRA---GLDARAAE 845

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            +L  +GA           L+ L   +  A+W E         +F ++  +   ++TL   
Sbjct: 846  ALADSGA-----------LRGLIGHRHRARW-EVAGVEAQRPLF-NDLPSEDTQVTLPLP 892

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR---LAAM 1000
            +V         +   LG     HPL + +   R++  K +  S   +   N R   +A +
Sbjct: 893  TVAED---LMADYATLGTTLGPHPLALLR---RQLAAKRFRSSQDLLHLENDRTLSVAGL 946

Query: 1001 VVSKQQKKTRKGSRIGWVTF 1020
            V+ +Q+  T  G     VTF
Sbjct: 947  VIGRQRPGTASG-----VTF 961


>gi|302546554|ref|ZP_07298896.1| DNA polymerase III, alpha subunit [Streptomyces hygroscopicus ATCC
            53653]
 gi|302464172|gb|EFL27265.1| DNA polymerase III, alpha subunit [Streptomyces himastatinicus ATCC
            53653]
          Length = 1166

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 292/1084 (26%), Positives = 486/1084 (44%), Gaps = 91/1084 (8%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            + P F HL   S +S+  GA     +  + A     AIA+TD ++L  A+ F++ + AAG
Sbjct: 2    RMPGFTHLHTASGFSMRYGAAHPERLAARAAERGMDAIALTDRDSLAGAVRFARASEAAG 61

Query: 67   IQPIIGCQLDIDMQ-DNLKMTNQGKTPF-------PTVPSIVLLV-STAEGYQRLIELVS 117
            ++P+ G  L +  +  +   T + +TP         + P  V L    A G+  L  LVS
Sbjct: 62   VRPLFGVDLAVQAELPDPGRTARRRTPVRGGAFIDESAPRAVFLARDGAAGWAALCGLVS 121

Query: 118  RMYLLDQGKQSVRI------CLSWLQEIGTEG----LIMLTGGSSGPIDRAFFFNSSQVA 167
              +       S R        L W   +   G    +I L G  S  + RA        A
Sbjct: 122  AAHAGLGHPGSARTNGDGPPLLHWRDLLNAPGALAPVIALLGPDSD-VGRALAAGRPDRA 180

Query: 168  EKRLLTFKKLFGDRLYVNLQRH----RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSE 222
             + L  +++LFGD L +    H     G    R  ++ V  A    +  V +N   +   
Sbjct: 181  ARLLAPWRELFGDALRLEAVWHGRPGTGPGSLRLAARTVGFAADQGVRAVLSNAVRYADP 240

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEA----------- 270
             +    DVL +      +  ++   + + + +LK   +M      + EA           
Sbjct: 241  GEGPVADVLDSARRLIPIDPRNPASLDSGERWLKGPRDMARAAERIAEAAGQRRDGAHRL 300

Query: 271  LENTVEIARRCSF-------ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            LE T   A  C         +  VH P  PR +       ++  E  LR++  A +    
Sbjct: 301  LEETARTAAACLVDPEDHIGLGTVHFPE-PRLVGAG----RRSAERVLRSRCAAAM---- 351

Query: 324  AQGAIAKGYHAQDYR-QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                + +GY     R  RL+ EL  I R+ ++ YFL VA  +   +   + V   RGSGA
Sbjct: 352  ----VLRGYDGDRARWGRLEDELRTIERLGYASYFLTVARVVDDTRALGVRVA-ARGSGA 406

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GS   + L +   DP+   LL ERFL+  R ++PD DID    RR +V R + +++G ER
Sbjct: 407  GSFVNHLLGVAHADPVACGLLMERFLSVRRAALPDIDIDVESARRLDVYRAIFDRFGAER 466

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN--DPAHPVSLQAIADDSRFRE 500
            VA +    + + + A+RDVG AL M  ++VDRL K  P+        +L  + +    RE
Sbjct: 467  VATVSMPETYRVRHAVRDVGAALGMDPAEVDRLAKSFPHIRARDARAALAELPELKELRE 526

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
            A        +L E+ + L+GL R  + H  G+++ D  L    P+        P++QF+ 
Sbjct: 527  ATAEQERFGKLWELVEALDGLPRGIAMHPCGVLLSDAGLLARTPIVPTSGEGFPMSQFDK 586

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDL---SLIPFDDHETYHLLTTKG 616
              +E+ GL+K D LG++  + +  ++ +     G  VDL   + +   D  TY L+ +  
Sbjct: 587  DDVEELGLLKLDVLGVRMQSAMAHAVAEIRRATGKTVDLDDPAQVRPGDPATYDLIRSTE 646

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSI 674
            TLG FQ+ES G R  L  +QPD   D++  +SL+RPGP+  D +  + + ++G+      
Sbjct: 647  TLGCFQIESPGQRDLLGRLQPDSFHDLVVDISLFRPGPVAADMVRPFIDARHGRRPARYP 706

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            HP ++  L+ET GV+++ EQ+++I  +++G     AD  RRA+     E   + +  F +
Sbjct: 707  HPDLEDALRETYGVVVFHEQIIKILSIMTGCERDLADEARRALSD--PERQGRVRAWFHA 764

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             A + G S  +    +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T 
Sbjct: 765  EAGRRGYSAEVLGRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTH 824

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDNRIYYSLAAIKGVGTT 848
            +     K +    DAR+  + I+P  VN    D+++      G+  +  +L+ + G+   
Sbjct: 825  DPGMYPK-RLLLADARRRGVPILPLDVNRSGSDYRIELMSENGEVGVRLALSDVHGISEA 883

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
              R I   +A +P+ SL+D   R       R V E L   GALD FG  R  LL  +  +
Sbjct: 884  ETRRI---AAGQPYSSLQDLWLRAHP---GRPVAERLAQVGALDAFGAGRRDLLLHIAEL 937

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +     ++  T+    +   E G  +           +   R   E  +LG   S H +
Sbjct: 938  HR-----QRAGTHDEGQLLLAETGPPAPA----GLPDLDEGERLGAELGILGMDVSRHLM 988

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
              ++  L ++G    +   +   G  + +A    + Q    R G R+ + T  +     +
Sbjct: 989  ADHRTFLDELGAMPAKRLRSARHGETVLVAGAKAATQTPPIRSGRRVIFTTLDDGTGLVD 1048

Query: 1029 ANFF 1032
              FF
Sbjct: 1049 CAFF 1052


>gi|134093911|ref|YP_001098986.1| putative DNA polymerase III subunit alpha [Herminiimonas
            arsenicoxydans]
 gi|133737814|emb|CAL60859.1| Error-prone DNA polymerase [Herminiimonas arsenicoxydans]
          Length = 1045

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 288/1024 (28%), Positives = 476/1024 (46%), Gaps = 75/1024 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S+++ L+GA     ++ +       ++AITD  +L   +    +A    + 
Sbjct: 6    PAYAELHCRSNFTFLQGASHPEELVQRACDLGYDSLAITDECSLAGVVRAYVEAKKHNLH 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-RMYLLDQGKQ 127
             IIG  + +     L                V L +   GY  L EL++      D+G  
Sbjct: 66   LIIGSDITLSCGTRL----------------VFLATNRNGYGNLSELITLGRRRADKGFY 109

Query: 128  SVR---ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            ++    +     QE  +  L  L    +  I +     S +   ++     + F  R +V
Sbjct: 110  TLHRSDLDPDERQEPNSIHLAQLPDCLAILIPKCCC--SREEIARQAAWLARTFVGRAWV 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
              +  H   D Y    +  +A   +LPLVAT + L          D L AV     V++ 
Sbjct: 168  AAELLHWSDDEYWLDLLTGIAAEMDLPLVATGDVLMHVRSRKPLQDTLTAVRLGKSVAEC 227

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                +   + +L++R  +  ++S  PE L+ T+ +A+ C+F L       P  I    + 
Sbjct: 228  GMDLQPNAEQHLRSRLRLAQLYS--PELLQETLTLAKLCTFSLDELRYQYPEEIVPAGET 285

Query: 303  IQKEEENELRNKAVAG-LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +     + LR     G  + R  QG  A      + RQ+++ EL +I  + +  +FL V 
Sbjct: 286  LS----SYLRRLTYEGATQRRFRQGIPA------NIRQQIEHELVLITELNYEPFFLTVY 335

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +++A+   I +  GRGS A SV  Y L IT++DP R S+LFERF++ +R   PD D+D
Sbjct: 336  DIVKFARSKGI-LCQGRGSAANSVVCYCLGITEVDPARSSVLFERFISRERNEPPDIDVD 394

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F   RR+EVI+Y+ NKYG  R A      + + ++A++DVG+AL + + QV+RL +    
Sbjct: 395  FEHQRREEVIQYIYNKYGRHRAALTAALITYRPRSAMKDVGKALGLDFEQVNRLSQ---- 450

Query: 482  DPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              +H         D R +E       P V +L+E+++ L G  RH S H  G VI    L
Sbjct: 451  --SHKWWDGREISDERLQEGGFDPQAPIVQKLVELTKTLIGFPRHLSQHTGGFVIARDSL 508

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDL 598
            ++LVP+      D  V +++   ++  GL+K D L L  L+ +Q++L+ ++ +RG  V++
Sbjct: 509  ARLVPIENASMKDRSVIEWDKDDLDALGLLKVDVLALGMLSAIQRALEMISTRRGRMVEM 568

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   
Sbjct: 569  QDIPSEDPLTYEMISAADTIGVFQIESRAQMSMLPRLRPQKYYDLVVQVAIVRPGPIQGG 628

Query: 659  VVY---NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            +V+     R    + IV   P I   L  T GV I+QEQVMQIA L +GY+  EAD LRR
Sbjct: 629  MVHPYLKQRHMHPDDIVYPGPEIKEALSRTFGVPIFQEQVMQIAVLAAGYTPGEADELRR 688

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +M   K K  ++K  ++   G +KNG     A  +FE +  F +YGF +SHAA++A++ Y
Sbjct: 689  SMAAWKRKGNLEKHGDKLKKGLAKNGYDPEFANRLFEQIKGFGEYGFPESHAASFALLVY 748

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             +AW+K H P  FLAA +  +        +  QDA++  + + P  V    ++  + D  
Sbjct: 749  VSAWIKRHEPAAFLAALLNSQPMGFYSASQLVQDAKRHGVPVRPIDVLISELESTMEDIH 808

Query: 835  IYY-----SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              Y      L  +KG+    A+ I+EA A + F  ++D   R +   L++  L +L  A 
Sbjct: 809  ERYPAVRLGLHMVKGLSLDGAKRIIEARAHQSFKDVDDLARRAE---LDQHELGALARAN 865

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL      R Q           A+W  +        +   +     + + L   S     
Sbjct: 866  ALLPLSGHRRQ-----------AKW--EVAAMMSAPMLLRDAPIREEPLLLPAASEGQEI 912

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
            V    +    G   + HPL + +P L+KM +    E          R   +V  +Q+  T
Sbjct: 913  V---ADYASTGLTLNRHPLALLRPRLKKMNLSTALEMKGFADRKIARTTGIVTMRQRPPT 969

Query: 1010 RKGS 1013
             KG+
Sbjct: 970  AKGT 973


>gi|296161200|ref|ZP_06844009.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1]
 gi|295888541|gb|EFG68350.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1]
          Length = 1049

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 284/1034 (27%), Positives = 476/1034 (46%), Gaps = 96/1034 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S+++ L GA     + ++       A+A+TD  +L   +     A  A + 
Sbjct: 9    PAYAELFCFSNFTFLHGASHAEELAERAEQLGYAALAVTDECSLAGVVRAHVAAKEAKLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G           ++ N   +P      ++LL    EGY  L EL++ +      K  
Sbjct: 69   FIVGSYF--------RLVNADGSP---AFGLILLARNREGYGNLSELIT-LARTRAPKGE 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L     E   +        I    F     V   ++      F  R +V L  
Sbjct: 117  YRLTPQDLSRPDRENRHLRGLPDCLAILVPDFPAKEDVLAAQVEWLDDTFTGRAWVGLVL 176

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H R  D      V  +A   ++P+VA  N +          D + A+     V +     
Sbjct: 177  HQRAMDDIHRGSVEFVARNQDVPVVALGNVVMHVRSRKPLQDTMTAIRVRRPVHECGYDL 236

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  + +++ D  +AL  TV+IA RC+F L               D+++ E
Sbjct: 237  TQNAEQHLRSRLRLANLYPD--DALAATVDIASRCAFSL---------------DELRYE 279

Query: 307  EENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
              +EL           R +   G + R   G   K       +++++ EL +IA +++  
Sbjct: 280  YPDELVPTGFTPTAYLRQETYIGAQRRFPSGIPHK------VQEQIEHELELIADLQYEP 333

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL V D +++A+  +I +  GRGS A S   Y L +T++DP R ++LFERF++ +R   
Sbjct: 334  YFLTVYDIVRFARSQSI-LCQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEP 392

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF   RR+EVI+Y+  KYG +R A      + + + ALR+ G+AL +    VD +
Sbjct: 393  PDIDVDFEHQRREEVIQYIYRKYGRDRAAIAAAVSTYRPRGALRETGKALGVDPQIVDVV 452

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
             K      +H     +    +RFRE+ L    P +    +++ +L G  RH S H+ G V
Sbjct: 453  AK------SHHWFDTSQDLLARFRESGLDPEKPLIQAWAKLASQLLGFPRHLSQHSGGFV 506

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QR 592
            I    L++LVP+      D  V +++   +E  GL+K D L L  L+ ++++LD ++ QR
Sbjct: 507  ISRGKLTRLVPVENAAMEDRSVIEWDKDDLEALGLLKIDVLALGMLSAIRRALDIVSEQR 566

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G + ++  IP +D +TY +++   T+G+FQ+ES      L  MQP    D++  V++ RP
Sbjct: 567  GERFEMQDIPAEDPQTYEMISAADTVGVFQIESRAQMSMLPRMQPRTFYDLVIEVAIVRP 626

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GPI    V  Y  R+ G E +      +   L  T GV I+QEQVMQ+A L +G++  EA
Sbjct: 627  GPIQGGAVHPYLQRRQGFEPVSYPSDALKTALGRTLGVPIFQEQVMQVAILAAGFTAGEA 686

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            D LRRAM   K K  ++K  +R + G  + G +   A +IFE +  F +YGF +SHAA++
Sbjct: 687  DQLRRAMAAWKRKGGLEKYYDRIVHGMQERGYTLAFAESIFEQIKGFGEYGFPESHAASF 746

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++ Y ++W+K H P  FLAA +  +        +  QDA++  ++++P  V     D  
Sbjct: 747  ALLVYASSWLKCHEPEAFLAAMLNSQPMGFYSPSQLVQDAQRHGVKVLPVDVTISGWDSA 806

Query: 830  V------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            +      G   +   ++ ++G+    A  I  A A +PF+S+ D   R    +L+R+ L 
Sbjct: 807  LVNLQGAGRPAVRLGMSLLRGMKDGAAERIENARAVRPFESVNDLARRA---QLDRKDLH 863

Query: 884  SLVFAGALDCF-GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
             L  A AL    G  R  L QS+  +                ++ A       D+     
Sbjct: 864  VLADANALTSLAGNRREALWQSVAAV-------------PDRDMLA--TAAVQDETPALG 908

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR----GNNIRLA 998
               E + +    + R +G     HPL++ +P L    +       +T+R    G   R  
Sbjct: 909  APTEANDI--VADYRSVGLTLGRHPLELLRPQLLAKRLM----PASTLRTYRDGRLARGC 962

Query: 999  AMVVSKQQKKTRKG 1012
             +V  +Q+  T KG
Sbjct: 963  GLVTVRQRPGTAKG 976


>gi|300087544|ref|YP_003758066.1| DNA polymerase III subunit alpha [Dehalogenimonas
            lykanthroporepellens BL-DC-9]
 gi|299527277|gb|ADJ25745.1| DNA polymerase III, alpha subunit [Dehalogenimonas
            lykanthroporepellens BL-DC-9]
          Length = 1045

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 281/1030 (27%), Positives = 484/1030 (46%), Gaps = 93/1030 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L  HS YS  +GA SL  ++ +       A+AITD +NL  A+ FS  + +  +  
Sbjct: 2    SYAELHCHSYYSFHDGASSLEELITRSGELGYRALAITDHDNLCGAMRFSHLSRSMNLSG 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ ++   +L                 LL    EGY+ L  L++  +  + G+++ 
Sbjct: 62   IIGAEVTVEGGYHL----------------TLLAENQEGYRNLCRLITLGH--ETGERNS 103

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
                S        GLI L+G   G +         + A + +  +++ FG D  ++ LQ 
Sbjct: 104  PQIPSARLAAHAAGLIALSGCPRGELSLLATAGCDERARQLVRQYQEWFGSDNYFIELQN 163

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV--AHSTVVSQKDR 245
            +  + D  R  ++V+LA     P+VAT N+ +   E +   D L+AV    S      +R
Sbjct: 164  NLVFGDAERNRRLVRLAGETGAPVVATGNAHYHLRERHRLQDCLVAVRSCKSLEACHHER 223

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             R   + +L+  +E+ + F+  PEA+ NTV IARRC F L   +   LP +         
Sbjct: 224  -RPNSEFHLRPLAEIEARFAGCPEAVANTVRIARRCEFNLTAQSGYDLPDY--------- 273

Query: 305  KEEENELRNKAVAG------LEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYF 357
                      A AG      LE    + A+ + G      R+RLD E  ++AR + +G+ 
Sbjct: 274  ---------PAPAGFTPESYLEKLCLEAAVRRYGSITAAVRERLDQEFRLVARHRLAGFL 324

Query: 358  LIVADFIQWAKKNNI--------------PVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            L+  D I+  ++  +              P G GRGS    +  Y + ++ IDPL++ L 
Sbjct: 325  LLYHDVIRLGREIMVEQGLTTADVPLEENPPGRGRGSSVSLLIGYLIGLSHIDPLKYGLS 384

Query: 404  FERFLNPDRMS-MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             ERFL  D +  +PD D+DF +  R+E+I     K+G +  A   T  + Q K A+RD+G
Sbjct: 385  LERFLPEDALGCVPDIDLDFPRSIREELILRTHRKWGWKYAALTGTIATYQIKGAVRDLG 444

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            + L +P  +VD+L + +    A  +  + ++  SRFR+ R+  P    L+ ++ +L+G  
Sbjct: 445  KVLSLPPEEVDQLARYVEWGSAAKLK-EKMSRASRFRD-RVDAPGWRDLIALAAELDGFP 502

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            ++   H  G++I   PL+ +VP+ R   +   V Q++   I+ AG +K DFL L  L+ +
Sbjct: 503  KYLGQHPGGMIISSVPLTDIVPVQRGAMAGRYVCQWDKDSIDDAGCVKIDFLALGALSQM 562

Query: 583  QKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            Q++++ + +R G  +D+S I F D   Y +L    T+GIFQ+ES+   Q +  ++P  + 
Sbjct: 563  QEAVELIRRRTGRFIDMSRIDFADPAVYDMLCRGDTIGIFQVESAAQMQTITRLKPRNLL 622

Query: 642  DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            D+   V   RPG   N  V  Y  R+ G++ +V  H L    L+ T G++++Q+QV Q+A
Sbjct: 623  DMAHEVGAVRPGVGVNGGVQEYLARRAGRKPVVYNHSLERRALERTLGIVLFQDQVNQLA 682

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKER-FISGASKNGISKTIAVNIFELLAKF-A 757
              ++G S S AD LRRA  ++  +EM  +  R F+SGA++ G+  + A  ++    KF  
Sbjct: 683  IDVAGLSPSVADQLRRAFSRRHNQEMLSRYHRMFMSGAAERGVGVSAAEAVWR---KFNG 739

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y F +SHA A+ V +YQ +W+K +YP+EF  A    +      ++   +DA +  I + 
Sbjct: 740  QYMFPESHAFAFGVTAYQASWLKLYYPLEFYVAIFNQQPMGFYNLETLKEDAGRHGIGVK 799

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKK 876
             P +N       + +  I      + G+G + A  I+ A +    +  + DF  R     
Sbjct: 800  GPDINLSAAGCTIDEGAIRLGFRQVTGLGQSAAEAIVSARTRGGDYRDVGDFLERSG--- 856

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
                VL+    A        +      SL++ ++  +W    R     +          D
Sbjct: 857  ----VLQETALA-------LAGAGAFDSLESNRRQVKWEIGLRYRPVNSQLFLPLPVRQD 905

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
             + LE         + + E R+LG + +GH +   +P      +    E  A   G  + 
Sbjct: 906  MVELEN---PGHWEKMQEEYRILGLFPAGHIMAGLRPRF-GGSVSTSREITAMKDGAEVT 961

Query: 997  LAAMVVSKQQ 1006
             A +V+ +Q+
Sbjct: 962  TAGLVIRRQR 971


>gi|213966980|ref|ZP_03395130.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato
            T1]
 gi|302059720|ref|ZP_07251261.1| error-prone DNA polymerase [Pseudomonas syringae pv. tomato K40]
 gi|302134128|ref|ZP_07260118.1| error-prone DNA polymerase [Pseudomonas syringae pv. tomato NCPPB
            1108]
 gi|213928302|gb|EEB61847.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato
            T1]
          Length = 1031

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 287/1050 (27%), Positives = 472/1050 (44%), Gaps = 119/1050 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + D+       A+AITD   L   +   Q +   G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFDRALRHGYAALAITDECTLAGIVRAWQASKDTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-----------RM 119
            +G ++ ++                  P IVLLV    GYQ L  L++           R+
Sbjct: 65   VGSEMHLE----------------NGPKIVLLVENLTGYQALCTLITVARRRAKKGEYRL 108

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             L D       +   WL +I  +    L  G+                       ++ F 
Sbjct: 109  LLEDFDHLPGGLLAIWLADIEGDAQACLAQGN---------------------WLRERFA 147

Query: 180  DRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +RL++ ++ HRG D   R + ++ LA +  +P VA+ +    +       D + A+ H T
Sbjct: 148  ERLWLGVELHRGADDEQRLADLLALAQSLAIPAVASGDVHMHARGRRALQDTITAIRHHT 207

Query: 239  VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-QVHAPILPRFI 296
             V++         + +L++   +   + D    L  ++ IARRC+F   Q+H       +
Sbjct: 208  TVAEAGHLLFANGERHLRSLDALAEHYPDW--LLAESLRIARRCTFTFDQLHYEYPHELV 265

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
             K      +   + LR     G+  R  +G    G  A   R +++ EL +I   KF  Y
Sbjct: 266  PK-----GQTSTSWLRELTERGIRRRWPRGL---GVAA---RAQVEKELALITEKKFDSY 314

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D +++A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   P
Sbjct: 315  FLTVHDIVEFARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERDEPP 373

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  DRR+EVI+Y+  +YG  R A      +     ALRDV + L +P  Q++ L 
Sbjct: 374  DIDVDFEHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGALRDVAKVLGLPPDQINALA 433

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
                   A      ++    R RE       P + R+L ++ +L G  RH S H  G VI
Sbjct: 434  D------AFSRWSDSLPSPERLREYGFDAETPILKRVLALTGELIGFPRHLSQHPGGFVI 487

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRG 593
             + PL  LVP+     ++  + Q++   ++  GL+K D L L  L+ L+++ D +   RG
Sbjct: 488  SEHPLDTLVPVENAAMAERTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRG 547

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +  L+ +P DD  TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPG
Sbjct: 548  KQWTLASLPGDDRPTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPG 607

Query: 654  PI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PI  D +  Y  R+N +E I +  P +  + + T GV ++QEQVM++A + + Y+  EAD
Sbjct: 608  PIQGDMVHPYLRRRNNEEAI-TYPPKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEAD 666

Query: 712  VLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRAM   K    +D  +ER  +G   NG     A  IFE +  F  YGF +SHAA++A
Sbjct: 667  QLRRAMAAWKRHGGLDPHRERLRTGMLANGYDADFADRIFEQIKGFGSYGFPESHAASFA 726

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +++Y + W+K H P  F  A +           +  QDAR+ +I+I    V     D  +
Sbjct: 727  LLTYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRSVDVRYSHWDCTL 786

Query: 831  G---------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                      +  I   L  ++      A  I  A + +PF    D   R     L+ R 
Sbjct: 787  EPLDHPDSTRNLAIRLGLRMLRSFREEDALRIEAARSKRPFADATDLAQRA---GLDSRA 843

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW----VEKNRTNKHENIFAHEKGTFSDK 937
             E+L  +GA           L+ L   +  A+W    VE  R    +++ + E      +
Sbjct: 844  AEALADSGA-----------LRGLIGHRHRARWEVAGVEAQRP-LFDDVTSEEV-----Q 886

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
            +TL   +V    V    +   LG     HPL + +  L     +  ++ +A      + +
Sbjct: 887  VTLPLPTVAEDLV---ADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLALENNRTLSV 943

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            A +V+ +Q+  T  G     VTF     E+
Sbjct: 944  AGLVIGRQRPGTASG-----VTFVTLEDEF 968


>gi|306835337|ref|ZP_07468361.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49726]
 gi|304568783|gb|EFM44324.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49726]
          Length = 973

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 239/767 (31%), Positives = 365/767 (47%), Gaps = 65/767 (8%)

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            ++++  +M  +    PE +  TV +AR CSF     AP LP F+  E        E+E+ 
Sbjct: 259  WMRSGEQMAQLLPGRPELIAETVHLARECSFTWGALAPNLPDFVVPEGHTEMSWLEHEVW 318

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             +       R  +        A+  +Q +  EL +I ++ F GYFLIV D + + ++ NI
Sbjct: 319  RRGKKRYASRPPE------IQARAKKQ-MRHELGIIKQLGFPGYFLIVCDLVDFCRQENI 371

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             +  GRGS A S   +AL IT+ +P+   LLFERFL+PDR   PD DID    RR+EVI+
Sbjct: 372  -LCQGRGSAANSAVCFALGITNAEPISAQLLFERFLSPDRDGPPDIDIDIESGRREEVIQ 430

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YV   +G +R AQ+    + + K A RD  RAL  P    D   K I   P         
Sbjct: 431  YVYRTHGRDRAAQVANVITYRRKGATRDAARALGYPQGSADAWSKGIAELP--------- 481

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
            AD S   E  L  P                RH   H+ G+V+ DRP++ +VPM       
Sbjct: 482  ADVSLLAEQFLDQP----------------RHLGIHSGGMVLCDRPIADVVPMEWARMEG 525

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHL 611
              V Q++      AGL+KFD LGL  L  L   +D + A  G +V L  +   +   Y +
Sbjct: 526  RSVLQWDKDDCAAAGLVKFDLLGLGMLEALHHMIDAVRATTGREVRLWELDLAEPAVYDM 585

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L     +G+FQ+ES      L  ++P C  D++  V+L RPGPI    V  Y  R++G E
Sbjct: 586  LCRADAVGVFQVESRAQLATLPRLKPRCFFDLVVEVALIRPGPIQGGSVHPYLRRRDGLE 645

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQ 728
             +   HP+++  L +T G+ ++QEQ+MQIA   +G++ +EAD LRRAMG K+   +M   
Sbjct: 646  PVTYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFTGAEADDLRRAMGSKRSPAKMAAL 705

Query: 729  KERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            + RF  G  + NGI   +A  ++  +  FA YGF +SH+ ++A + Y +AW K HYP EF
Sbjct: 706  RSRFFEGLRATNGIDGEVAEKLWAKITAFAAYGFPESHSQSFASLVYFSAWFKHHYPAEF 765

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVG 846
                +  +       +   QDAR+  ++++P S+N      + +    I   L  IKG+G
Sbjct: 766  CVGLLRAQPMGFYSPQSLIQDARRHGVRVLPLSINDSGAQARALPTGEIRLGLNLIKGLG 825

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  + EA+A  PF S+ D   R D   L+   +E+L  AGAL+C G  R Q L    
Sbjct: 826  DKAAERV-EAAA--PFSSVSDLSRRAD---LSVEQVEALATAGALECLGLERRQAL---- 875

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSSVRFENEQRVLGFYFSG 965
                   W       + E +        S  +  +  F +  + V         G     
Sbjct: 876  -------WQAGVAATEREGMLPGTSALASPHLPGMSAFELMATDV------AATGVTHDK 922

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             P+++ +  L  +    +   V    G  +R+A ++  +Q+ +T  G
Sbjct: 923  QPMELVRAALGDVLPSSHLPHVPD--GTRVRIAGIITHRQRPRTASG 967


>gi|301385165|ref|ZP_07233583.1| error-prone DNA polymerase [Pseudomonas syringae pv. tomato Max13]
          Length = 1031

 Score =  350 bits (899), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 287/1050 (27%), Positives = 472/1050 (44%), Gaps = 119/1050 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + D+       A+AITD   L   +   Q +   G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFDRALRHGYAALAITDECTLAGIVRAWQASKDTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-----------RM 119
            +G ++ ++                  P IVLLV    GYQ L  L++           R+
Sbjct: 65   VGSEMHLE----------------NGPKIVLLVEHLTGYQALCTLITVARRRAKKGEYRL 108

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             L D       +   WL +I  +    L  G+                       ++ F 
Sbjct: 109  LLEDFDHLPGGLLAIWLADIEGDAQACLAQGN---------------------WLRERFA 147

Query: 180  DRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +RL++ ++ HRG D   R + ++ LA +  +P VA+ +    +       D + A+ H T
Sbjct: 148  ERLWLGVELHRGADDEQRLADLLALAQSLAIPAVASGDVHMHARGRRALQDTITAIRHHT 207

Query: 239  VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-QVHAPILPRFI 296
             V++         + +L++   +   + D    L  ++ IARRC+F   Q+H       +
Sbjct: 208  TVAEAGHLLFANGERHLRSLDALAEHYPDW--LLAESLRIARRCTFTFDQLHYEYPHELV 265

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
             K      +   + LR     G+  R  +G    G  A   R +++ EL +I   KF  Y
Sbjct: 266  PK-----GQTSTSWLRELTERGIRRRWPRGL---GVAA---RAQVEKELALITEKKFDSY 314

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D +++A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   P
Sbjct: 315  FLTVHDIVEFARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERDEPP 373

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  DRR+EVI+Y+  +YG  R A      +     ALRDV + L +P  Q++ L 
Sbjct: 374  DIDVDFEHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGALRDVAKVLGLPPDQINALA 433

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
                   A      ++    R RE       P + R+L ++ +L G  RH S H  G VI
Sbjct: 434  D------AFSRWSDSLPSPERLREYGFDAETPILKRVLALTGELIGFPRHLSQHPGGFVI 487

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRG 593
             + PL  LVP+     ++  + Q++   ++  GL+K D L L  L+ L+++ D +   RG
Sbjct: 488  SEHPLDTLVPVENAAMAERTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRG 547

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +  L+ +P DD  TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPG
Sbjct: 548  KQWTLASLPGDDRPTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPG 607

Query: 654  PI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PI  D +  Y  R+N +E I +  P +  + + T GV ++QEQVM++A + + Y+  EAD
Sbjct: 608  PIQGDMVHPYLRRRNNEEAI-TYPPKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEAD 666

Query: 712  VLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRAM   K    +D  +ER  +G   NG     A  IFE +  F  YGF +SHAA++A
Sbjct: 667  QLRRAMAAWKRHGGLDPHRERLRTGMLANGYDADFADRIFEQIKGFGSYGFPESHAASFA 726

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +++Y + W+K H P  F  A +           +  QDAR+ +I+I    V     D  +
Sbjct: 727  LLTYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRSVDVRYSHWDCTL 786

Query: 831  G---------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                      +  I   L  ++      A  I  A + +PF    D   R     L+ R 
Sbjct: 787  EPLDHPDSTRNLAIRLGLRMLRSFREEDALRIEAARSKRPFADATDLAQRA---GLDSRA 843

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW----VEKNRTNKHENIFAHEKGTFSDK 937
             E+L  +GA           L+ L   +  A+W    VE  R    +++ + E      +
Sbjct: 844  AEALADSGA-----------LRGLIGHRHRARWEVAGVEAQRP-LFDDVTSEEV-----Q 886

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
            +TL   +V    V    +   LG     HPL + +  L     +  ++ +A      + +
Sbjct: 887  VTLPLPTVAEDLV---ADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLALENNRTLSV 943

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            A +V+ +Q+  T  G     VTF     E+
Sbjct: 944  AGLVIGRQRPGTASG-----VTFVTLEDEF 968


>gi|213965050|ref|ZP_03393249.1| DNA polymerase III, alpha subunit [Corynebacterium amycolatum SK46]
 gi|213952586|gb|EEB63969.1| DNA polymerase III, alpha subunit [Corynebacterium amycolatum SK46]
          Length = 1079

 Score =  350 bits (899), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 243/762 (31%), Positives = 364/762 (47%), Gaps = 70/762 (9%)

Query: 269  EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA--QG 326
            + ++ T +IA  C+F L + AP LPR+      D    E++ LR  A AG   R     G
Sbjct: 306  QVVQTTQDIAGECAFTLDLIAPELPRWEVPAGHD----EDSWLREIARAGARRRYGPVDG 361

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
            A      A+ + Q L+ EL VI  + F GYFLIV D  ++ ++  I +  GRGS A SV 
Sbjct: 362  AGDGSVQARAWAQ-LENELTVIRELGFPGYFLIVHDICEFCRRTGI-LAQGRGSAANSVV 419

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
             +AL IT++DP+   LLFERFL+P+R   PD D+D    RR+EVI+YV  KYG +  AQ+
Sbjct: 420  CFALGITNVDPISAGLLFERFLSPERDGPPDIDVDIESGRREEVIQYVYEKYGRDNAAQV 479

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
                + + + ALRD  R L      +D   +     P  PV                   
Sbjct: 480  ANVITYRRRGALRDAARVLGYSPGVIDAWVRDREACPTEPVR------------------ 521

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
                  +++++L G  RH   H+ G+VI DRP++ +VP+         V Q++      A
Sbjct: 522  ------QLAEQLRGQPRHLGIHSGGMVICDRPIADVVPVEWARMEGRSVVQWDKDDCAAA 575

Query: 567  GLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+KFD LGL  L  +   +D +  Q G +V+L  I   + E Y +L     +G+FQ+ES
Sbjct: 576  GLVKFDLLGLGMLEAIHHCIDLVYEQHGRRVNLWEIDVAEPEVYEMLARADAVGVFQVES 635

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK 683
                  L  ++P    D++  V+L RPGPI    V  Y  R+NG E +   HP+++  L 
Sbjct: 636  RAQLATLPRLKPREFFDLVVEVALIRPGPIQGGSVHPYIRRRNGLEPVTYEHPVLEKSLG 695

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASK-NGI 741
            +T G+ ++QEQ+MQ+A   +G+S +EAD LRRAMG K+   +M+    RF++G  + +GI
Sbjct: 696  KTLGIPLFQEQLMQMAVDAAGFSGAEADSLRRAMGSKRSVAKMEALHARFLAGLERTSGI 755

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
             + +   ++  +  FA YGF +SHA ++A + Y +AW K HYP EF  A +  +      
Sbjct: 756  DEDVGEQLWNKIVAFAAYGFPESHAQSFASLVYFSAWFKYHYPAEFCVALLRAQPMGFYS 815

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
             +    DAR+  I    P +    V+  V D RI   L AI GVG   A  I+ A   +P
Sbjct: 816  PQSLIADARRHGIGCDGPDIALSGVEASVIDGRIRLGLGAIAGVGNDVAERIVAA---RP 872

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F +  D   R    +L    +E+L  AGAL   G  R Q L           W       
Sbjct: 873  FVNAADVARRA---RLGVGHMEALARAGALGSLGIDRRQAL-----------WAAGVAAT 918

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFE---NEQRVLGFYFSGHPLDVYKPILRKM 978
            + E +           +TL           FE    +    G     +P+   +  L++ 
Sbjct: 919  ESEGMLP--------GLTLADAPALPGMTEFELAAADLMATGVTPGQYPVAALREDLQER 970

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            G+    E  A   G  + +A +V  +Q+  T  G     VTF
Sbjct: 971  GVVPAAELKAVPDGTRVEVAGVVTHRQRPGTAGG-----VTF 1007


>gi|227502752|ref|ZP_03932801.1| error-prone DNA polymerase [Corynebacterium accolens ATCC 49725]
 gi|227076482|gb|EEI14445.1| error-prone DNA polymerase [Corynebacterium accolens ATCC 49725]
          Length = 1039

 Score =  350 bits (899), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 239/767 (31%), Positives = 365/767 (47%), Gaps = 65/767 (8%)

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            ++++  +M  +    PE +  TV +AR CSF     AP LP F+  E        E+E+ 
Sbjct: 259  WMRSGEQMAQLLPGRPELIAETVHLARECSFTWGALAPNLPDFVVPEGHTEMSWLEHEVW 318

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             +       R  +        A+  +Q +  EL +I ++ F GYFLIV D + + ++ NI
Sbjct: 319  RRGKKRYASRPPE------IQARAKKQ-MRHELGIIKQLGFPGYFLIVCDLVDFCRQENI 371

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             +  GRGS A S   +AL IT+ +P+   LLFERFL+PDR   PD DID    RR+EVI+
Sbjct: 372  -LCQGRGSAANSAVCFALGITNAEPISAQLLFERFLSPDRDGPPDIDIDIESGRREEVIQ 430

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YV   +G +R AQ+    + + K A RD  RAL  P    D   K I   P         
Sbjct: 431  YVYRTHGRDRAAQVANVITYRRKGATRDAARALGYPQGSADAWSKGIAELP--------- 481

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
            AD S   E  L  P                RH   H+ G+V+ DRP++ +VPM       
Sbjct: 482  ADVSLLAEQFLDQP----------------RHLGIHSGGMVLCDRPIADVVPMEWARMEG 525

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHL 611
              V Q++      AGL+KFD LGL  L  L   +D + A  G +V L  +   +   Y +
Sbjct: 526  RSVLQWDKDDCAAAGLVKFDLLGLGMLEALHHMIDAVRATTGREVRLWELDLAEPAVYDM 585

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L     +G+FQ+ES      L  ++P C  D++  V+L RPGPI    V  Y  R++G E
Sbjct: 586  LCRADAVGVFQVESRAQLATLPRLKPRCFFDLVVEVALIRPGPIQGGSVHPYLRRRDGLE 645

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQ 728
             +   HP+++  L +T G+ ++QEQ+MQIA   +G++ +EAD LRRAMG K+   +M   
Sbjct: 646  PVTYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFTGAEADDLRRAMGSKRSPAKMAAL 705

Query: 729  KERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            + RF  G  + NGI   +A  ++  +  FA YGF +SH+ ++A + Y +AW K HYP EF
Sbjct: 706  RSRFFEGLRATNGIDGEVAEKLWAKITAFAAYGFPESHSQSFASLVYFSAWFKHHYPAEF 765

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVG 846
                +  +       +   QDAR+  ++++P S+N      + +    I   L  IKG+G
Sbjct: 766  CVGLLRAQPMGFYSPQSLIQDARRHGVRVLPLSINDSGAQARALPTGEIRLGLNLIKGLG 825

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  + EA+A  PF S+ D   R D   L+   +E+L  AGAL+C G  R Q L    
Sbjct: 826  DKAAERV-EAAA--PFSSVSDLSRRAD---LSVEQVEALATAGALECLGLERRQAL---- 875

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSSVRFENEQRVLGFYFSG 965
                   W       + E +        S  +  +  F +  + V         G     
Sbjct: 876  -------WQAGVAATEREGMLPGTSALASPHLPGMSAFELMATDV------AATGVTHDK 922

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             P+++ +  L  +    +   V    G  +R+A ++  +Q+ +T  G
Sbjct: 923  QPMELVRAALGDVLPSSHLPHVPD--GTRVRIAGIITHRQRPRTASG 967


>gi|294625888|ref|ZP_06704502.1| DNA polymerase III alpha chain [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 11122]
 gi|292599798|gb|EFF43921.1| DNA polymerase III alpha chain [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 11122]
          Length = 1065

 Score =  350 bits (899), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 277/1039 (26%), Positives = 479/1039 (46%), Gaps = 93/1039 (8%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q  +  P++  L   S +S L GA S   +  +       A+AITD  +L   +   + 
Sbjct: 21   AQQADDLPAYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEA 80

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            + A G++ I+G +    + D +++              VLLV  A GY +L  L++    
Sbjct: 81   SRATGVRLIVGSEFT--LVDGIRL--------------VLLVENAHGYPQLCGLITTARR 124

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                K + R+  + +Q    + +         P   A +   +Q   ++    +++FG+R
Sbjct: 125  A-ASKGAYRLGRAEVQAQFRDVV---------PGVFALWLPGAQPQAEQGAWLQQVFGER 174

Query: 182  LYVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ ++ HR  D     QV+Q LA    +  +A+ +       +    D L A+ H+  +
Sbjct: 175  AFLAVELHREQDDVARLQVLQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRHTLPL 234

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            ++         + +L+ R  + +I+ D    L+ TVE+++RC+F +   +   PR +  E
Sbjct: 235  AECGAHLFRNGERHLRTRRALGNIYPD--ALLQATVELSQRCTFDISKISYTYPRELVPE 292

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                     + LR    AG+  R   G  AK       R+ ++ EL +IA   +  +FL 
Sbjct: 293  ----GHTPTSYLRQLTEAGIRKRWPGGISAK------VREDIEKELALIAFKNYEAFFLT 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++A+  NI +  GRGS A S   YAL IT ++P    LL  RFL+  R   PD D
Sbjct: 343  VQDVVRFARDQNI-LCQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDID 401

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EV++YV +KYG ER A   T    + K+A+RDV +A  +P  Q+  L    
Sbjct: 402  VDFEHERREEVLQYVYSKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCY 461

Query: 480  P-NDPAHPVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
               +   P+       + R  EA   LA+P ++++L +++ L    RH S H  G VI D
Sbjct: 462  GWGNGETPM-------EQRIEEAGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISD 514

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK 595
             PLS LVP+      +  + Q++   +E   L+K D L L  LT ++K+L+ +   RG  
Sbjct: 515  EPLSLLVPVENAAMPNRTIIQWDKDDLETMQLLKVDCLALGMLTCIRKTLELVRGHRGRN 574

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              ++ +P DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 575  YSIATLPGDDAPTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPI 634

Query: 656  --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              D +  Y  R+ G+E++    P ++ +LK T GV ++QEQVM++    + YS  EAD L
Sbjct: 635  QGDMVHPYLRRRQGREEVNYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYSEDEADNL 694

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RR+M   +   +M++ + R        G + +    IFE +  F  YGF +SHAA++A +
Sbjct: 695  RRSMAAWRRGGDMEQHRTRVRERMQGKGYASSFIDQIFEQIKGFGSYGFPQSHAASFAKL 754

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-----IQIMPPSVNTPCVD 827
             Y + W+K H P  F    +  +        +  QDAR+ +     ++++P  V     D
Sbjct: 755  VYASCWLKRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWD 814

Query: 828  FKVGDNRIYYSLA-------------AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
              +   R + S A              + G+    A+ I+ A   + F  + D C R   
Sbjct: 815  NTLVGGRPWRSAADPGEQPAIRLGMRQVAGLSQVVAQRIVAARTQRAFADIGDLCLRA-- 872

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
              L+ +   +L  AGA           LQ +   +  A+W       +   +     G+ 
Sbjct: 873  -ALDEKARLALAEAGA-----------LQGMVGNRNAARWAMAGVEARRPLL----PGSP 916

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    +F    +      + R +G     HP+ + +P +R+  I G  E      G+ 
Sbjct: 917  EERPV--EFEAPRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLSELQGRRHGSG 974

Query: 995  IRLAAMVVSKQQKKTRKGS 1013
            + +A +V  +Q+  T KG+
Sbjct: 975  VHVAGLVTQRQRPATAKGT 993


>gi|254563941|ref|YP_003071036.1| error-prone DNA polymerase, DNA polymerase III subunit alpha
            [Methylobacterium extorquens DM4]
 gi|254271219|emb|CAX27231.1| error-prone DNA polymerase, DNA polymerase III, alpha subunit
            [Methylobacterium extorquens DM4]
          Length = 1067

 Score =  350 bits (898), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 298/1038 (28%), Positives = 466/1038 (44%), Gaps = 106/1038 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S   LQV + +S L GA S   +    +    PA+ +TD  +L   +   Q A   G++ 
Sbjct: 2    STPELQVTTHFSFLRGASSPEELFSAASLLGIPALGVTDHGSLAGMVRAHQAAKVTGVRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+LD+D   +              P +V     A  Y RL  L+S +     GK   
Sbjct: 62   VVGCRLDLDDLSS--------------PLLVYPTDRA-AYGRLCRLLS-LGKARGGKGRC 105

Query: 130  RICLSWLQEIGTEG----LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            R+    L+E   EG    L+    GS+ P D              L  FK LFG R    
Sbjct: 106  RLTWRDLEEW-QEGFFAILLAEQPGSALPND--------------LARFKGLFGARASCA 150

Query: 186  L-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-- 242
            L +R R  D  R   +   A    +P VAT + L+         DV+  +     + +  
Sbjct: 151  LTRRFRPDDADRLDALAAAARAARVPTVATGDILYHVAGRRRLQDVVTCIRLGLTIDRAG 210

Query: 243  --KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              K+R     D +LK  +E   +F+  PEAL   VEIA  C F L   A   P   E   
Sbjct: 211  FAKER---HADRFLKPPAETARLFARFPEALARAVEIAAACRFSLDDLAYTYP--TESRE 265

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
            D +  +E           L+V    GA A+ Y A   +   ++L  EL++I R+ ++ YF
Sbjct: 266  DGLSPQER----------LDVLTWAGA-ARRYPAGVPEAVTRQLHHELDLIGRLAYAPYF 314

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V   + +A +  I +  GRGS A S   + L IT IDP R +LLFERF++  R   PD
Sbjct: 315  LTVESIVAFANREKI-LCQGRGSAANSAVCFCLGITSIDPTRQNLLFERFVSEARREPPD 373

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  +RR+EVI+++   YG  R A        +++ ALR+VG+ + +P      L +
Sbjct: 374  IDVDFEHERREEVIQWIFQTYGRHRSALTAIVSRFRSRGALREVGKVMGLPEDVTGALNR 433

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVI 534
            +  +  +  V       +   RE  L +P   RL   L I+++L G  RH S H  G V+
Sbjct: 434  MTWSWSSEGVG------ERELRELNL-NPDDRRLRLTLAIARELIGTPRHLSQHPGGFVL 486

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
                L +LVP+     +D  V +++   I+    +K D LGL  L  L+++ D LA+ + 
Sbjct: 487  TLDRLDELVPVEPAAMADRQVIEWDKDDIDALKFMKVDVLGLGMLGCLRRAFDLLAEVKN 546

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
               DL+ IP  D  T+ ++    TLG+FQ+ES      L  M+P    D++  V++ RPG
Sbjct: 547  DPHDLASIPSKDEPTFAMIRRADTLGVFQIESRAQMAMLPRMKPKEFYDLVIEVAIVRPG 606

Query: 654  PI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PI  D +  Y  R+ G E++    P +  +L++T GV ++QEQ MQ+A + +G+S +EAD
Sbjct: 607  PIQGDMVHPYLRRREGLEEVTYPTPELKAVLEKTLGVPLFQEQAMQVAMVGAGFSATEAD 666

Query: 712  VLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRR+M   K    + + + R + G   NG ++  A   F+ L  F  YGF +SHAA++A
Sbjct: 667  ELRRSMATFKFTGGVHRFQSRLVEGMVANGYARDFAERTFKQLEGFGSYGFPESHAASFA 726

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVD 827
            +++Y ++WMK H+P  F AA +  +        +  +DAR   ++I P  VN     C  
Sbjct: 727  LLAYASSWMKCHHPDVFCAALLNAQPMGFYAPAQIVRDARAHGVEIRPLDVNFSQWDCTL 786

Query: 828  FKVGDNRIYYS----LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
              +G  R  ++    L    G+       ++ A   +PF SL +   R            
Sbjct: 787  ETLGAGRKLFAVRLGLRLANGLAERDGHRLVAARGGRPFASLPELADRAG---------- 836

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--------AHEKGTFS 935
              + A +L C    R    +SL   ++ A W  K        +F        A    T  
Sbjct: 837  --IPAASLTCL--VRADAFRSLGLNRREAAWAVKALRPDPLPLFAALSAPIQAEPAQTAE 892

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
              ++L   S     V    +    G     HPL   +  L  +G +          G  I
Sbjct: 893  PAVSLPAMSAGGEVV---ADYCANGLSLRAHPLAFLRETLTALGARPCAALERAGNGAPI 949

Query: 996  RLAAMVVSKQQKKTRKGS 1013
             +A +V+ +Q+  + KG+
Sbjct: 950  VVAGIVLMRQRPGSAKGT 967


>gi|255039130|ref|YP_003089751.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053]
 gi|254951886|gb|ACT96586.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053]
          Length = 1074

 Score =  350 bits (897), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 273/1025 (26%), Positives = 475/1025 (46%), Gaps = 88/1025 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  LQV ++++ L G      ++ +       AIAITD N L   +     A     + 
Sbjct: 2    NYTELQVTTNFTFLRGGSHPEELVGQAIELGYKAIAITDRNTLAGVVRAHAAAKGKDFRI 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQS 128
            I  C+LD  + D               PS++   +    Y  L  L++   L  ++GK  
Sbjct: 62   IPACRLD--LLDG--------------PSLLAYPTHQAAYSHLSALLTEGNLRTEKGK-- 103

Query: 129  VRICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN- 185
               C  +  ++    EG I         ++ +F F+ S   E+ L  +++  G  LY+  
Sbjct: 104  ---CDLYKADVYRYAEG-IRFIAVPPAALNESFDFDPS--FEQNLREYRRALGKSLYLGA 157

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKD 244
            ++ ++G D  +  ++ QL+   ++PLVATN+  + + +  E  DVL  +    T+ +   
Sbjct: 158  IRSYQGDDMKKLYRLDQLSQHLDIPLVATNDVHYHNFQRRELQDVLTCIREKCTIYNAGF 217

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R     + YLK  +EM  +F   PEA+E T EIA  C F L     + P  +  E     
Sbjct: 218  RLHENAERYLKPAAEMQRLFMKFPEAIERTQEIADACQFSLSSLKYVYPEELTTE----G 273

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +    EL +    G + R  +G I    HA     ++  E   +  M ++ YFL V D +
Sbjct: 274  RTPMEELIHLTWLGAKKRFPKG-IRPDIHA-----KILHEFKFVEEMNYAAYFLTVYDIV 327

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A +  I +  GRGS A SV  Y L IT +DP+   LLFERF++  R   PD D+DF  
Sbjct: 328  RFANEQKI-LCQGRGSAANSVICYCLGITSVDPIEIDLLFERFISSSRNEPPDIDVDFEH 386

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EV++Y+ NKYG +R   + T   +  K A+RDV +A+ M    + RL         
Sbjct: 387  ERREEVMQYIYNKYGRDRAGIVATVTQVHQKGAVRDVAKAMGMSMDAISRLSS------- 439

Query: 485  HPVSLQAIADDSRFREARLA--------DPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
               SL    D+  + + +L         DP + ++L+++++  G  R    H  G VI  
Sbjct: 440  ---SLWEFTDE--WFDGKLITEHGFNPNDPHLIKILDLTRQYMGFPRQLGQHTGGFVITQ 494

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVK 595
              LS L P+      +    ++N   I+  G +K D L L  LT ++K+ D L Q   ++
Sbjct: 495  GKLSDLCPILNARMENRTCIEWNKDDIDTLGFLKIDVLALGMLTCIRKAFDLLKQHYDIE 554

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             +L+ IP DD + Y ++    T+G+FQ+ES   +  L  ++P C  D++  V++ RPGPI
Sbjct: 555  HNLASIPPDDQDVYDMICKADTIGVFQIESRAQQSMLPRLKPRCFYDLVIEVAIVRPGPI 614

Query: 656  --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              D +  Y  R+N +E++V     ++ +LK+T GV ++QE  M+IA + +G++ +EAD L
Sbjct: 615  QGDMVHPYLRRRNDEEEVVYPKKELEDILKKTLGVPLFQEHAMKIAIVAAGFTATEADEL 674

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RR+M   K K  ++  +++ ++G  KNG  K  A  IF+ L  F  YGF +SHAA++A++
Sbjct: 675  RRSMATFKSKGIVNTLRDKLVNGMVKNGYEKDFAERIFKQLEGFGSYGFPESHAASFALL 734

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y ++W+K H+P  F AA +  +     +  +   DAR  ++++    +N    D  + +
Sbjct: 735  VYVSSWIKCHHPDVFAAALLNSQPMGFYRPAQIVIDARNHDVKVREIDINHSFWDNTLEN 794

Query: 833  -----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +      IKG+     + I+  +  +PF  +           ++   LE L  
Sbjct: 795  IPGEQCALRLGFRQIKGLREEEMQ-ILTNARTQPFTHIHQLL----EAGISHTALEKLAD 849

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            A A    G+ R Q           A W      ++   +FA +       + L + ++  
Sbjct: 850  ADAFRSIGFDRRQ-----------AFWEASALADRPMGLFAGQPSPREADVELPQMTLAE 898

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +   ++          HP+   +  L  +G    +          +++A +V+ +Q+ 
Sbjct: 899  HVI---HDYATTSLSLKQHPVSFVREQLDALGAVPSKALELIPDSRIVKVAGLVLVRQRP 955

Query: 1008 KTRKG 1012
             T  G
Sbjct: 956  GTASG 960


>gi|325109561|ref|YP_004270629.1| error-prone DNA polymerase, DnaE-like protein [Planctomyces
            brasiliensis DSM 5305]
 gi|324969829|gb|ADY60607.1| error-prone DNA polymerase, DnaE-like protein [Planctomyces
            brasiliensis DSM 5305]
          Length = 1061

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 287/1026 (27%), Positives = 474/1026 (46%), Gaps = 91/1026 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L+  S++S LEGA   + ++++ A     A+AITD N+L   +     A  AGI  +
Sbjct: 31   FAELRCLSNFSFLEGASHPDELVERAAELGYRALAITDRNSLAGVVRAHVAAKQAGIHLL 90

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +L               TP  ++P IV+L     GY RL  L++R     + +    
Sbjct: 91   IGAEL---------------TPVDSLP-IVVLARNRAGYGRLCRLITR----GRTRAPKG 130

Query: 131  ICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             C    Q+I   +E LI     S  P +         V  + L  ++ +F D  Y  + R
Sbjct: 131  ACELTFQDIAEHSEDLIGCVPLSVRPTETP---QEESVFRRELSRYRDVFQDSGYGLVHR 187

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D       ++LA    L  VA+N+  +         DVL A+ H   V      R
Sbjct: 188  HLSDRDDLSVHAQLKLAEGSGLTPVASNDVHYHLPNRRVLQDVLTAIRHRCPVDSLGF-R 246

Query: 248  VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            + P  + YLK   +M ++F + PE +  T +IA +C+F L     +   + E+ C + Q 
Sbjct: 247  MFPNGERYLKTPGQMRALFGNCPELVTRTADIANQCTFSLD---ELRYEYPEELCPE-QT 302

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 LR     G   R   G           RQ +++EL +IA +K+  YFL V D + 
Sbjct: 303  TPMEHLRQLTWRGAAGRYPDGT------PDHVRQLIEYELALIAELKYEAYFLTVHDLVH 356

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   + L +T +DP    +LFERF++ +R   PD DIDF  +
Sbjct: 357  FARSRGI-LCQGRGSAANSAVCFCLGVTSVDPAYTQVLFERFISKERDEAPDIDIDFEHE 415

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG ER     T  + + K+A+RDVG+AL +    ++ L          
Sbjct: 416  RREEVIQYIYQKYGRERAGMTATLITYRLKSAVRDVGKALGLSQDCLETLAAGFERSN-- 473

Query: 486  PVSLQAIADDSRFREARLADPSV--DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               LQ ++   R  EA ++  S     L  +   + G  RH S H  G+V+    L ++V
Sbjct: 474  --ELQTLS--QRMNEAGVSGGSTLGQFLRRLVVDILGFPRHLSQHTGGMVMTQGALCEVV 529

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602
            P+         V +++   ++  G++K D L L  LT ++K  D L +  G  + L+ +P
Sbjct: 530  PIENASMPGRTVVEWDKNDLDALGILKVDCLALGMLTAIRKGFDLLRESYGRDLSLATVP 589

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             +D +TY ++    T+G+FQ+ES      L  ++P  + D++  V++ RPGPI  D +  
Sbjct: 590  AEDPQTYAMIQQADTMGVFQIESRAQMSMLPRLRPKEMYDLVIQVAIVRPGPIQGDMVHP 649

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  R++G E     +  I  +L+ T GV I+QEQ M++A + +G++  EAD LRRAMG  
Sbjct: 650  YLRRRDGLEAEEYPNEQIRDVLQRTLGVPIFQEQAMKLAVVAAGFTPGEADQLRRAMGAW 709

Query: 721  IKEE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
             K   MD+  ++ ISG   +G  +  A  +F  +  F +YGF +SHAA++A++ Y +AW+
Sbjct: 710  RKSGVMDRFHQKLISGMLAHGYGRDFAERLFNQIRGFGEYGFPESHAASFALLVYVSAWL 769

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-------------TPCV 826
            K HYP  FLAA +  +     +  +  +DARQ  +++ P  VN             + C 
Sbjct: 770  KCHYPDVFLAALLNSQPLGFYQPAQLVRDARQHGVEVRPVDVNFSDWNCTLEAQPQSSCQ 829

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
              ++G          I G+    A  I+ A     F ++++  +R     +   VL  L 
Sbjct: 830  AVRLG-------FRQITGLSQRDAEAIVAARKGGAFQTVDEIANRTG---VANAVLSRLA 879

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             + A     YS +QL       ++ A W    +   +  + + +     D + +     E
Sbjct: 880  RSDA-----YSSLQL------SRRTALWESLPQRLSNSLLESQQPDAIPDALPIMPALTE 928

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                   ++ R  G     HP+   +  L ++     +   +      +R+A +V+ +Q+
Sbjct: 929  -----VIHDYRHSGLSLKDHPVRFLRKRLTQLQAVPMDTLGSYPVDRRVRVAGLVLLRQR 983

Query: 1007 KKTRKG 1012
              T KG
Sbjct: 984  PGTAKG 989


>gi|330962397|gb|EGH62657.1| error-prone DNA polymerase [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 925

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 262/911 (28%), Positives = 427/911 (46%), Gaps = 86/911 (9%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S  +  L   S++S   GA S   + ++       A+AITD   L   +   Q +   G+
Sbjct: 2   STEYAELHCLSNFSFQRGASSALELFERALRHGYTALAITDECTLAGIVRALQASRKTGL 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS---------- 117
             I+G ++ I+                  P IVLLV    GY+ L +L++          
Sbjct: 62  PLIVGSEMYIE----------------NGPKIVLLVEDKTGYEALCKLITVARRRAKKGE 105

Query: 118 -RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            R+   D  + S  +   WL +I  EG                    +Q    +    ++
Sbjct: 106 YRLLREDFERSSSGLLAIWLPDI--EG-------------------DAQACRSQGNWLRE 144

Query: 177 LFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F DRL++ ++ HRG D   R + ++ LA +  +P VA+ +    +       D + A+ 
Sbjct: 145 HFTDRLWLGVELHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIR 204

Query: 236 HSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
           H T V++         + +L+    +   + D    L  +V IARRC+F  +      P 
Sbjct: 205 HHTTVAEAGHLLFANGERHLRPLDALAEHYPDW--LLAESVRIARRCTFDFEQLKYEYP- 261

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
               E     +   + LR     G+  R  +G  A        R +++ EL +I   KF 
Sbjct: 262 ---HELVPKGQTATSWLRELTERGIRRRWPKGLSAAA------RAQVEKELALITEKKFD 312

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFL V D +++A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R  
Sbjct: 313 SYFLTVHDIVEFARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERNE 371

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            PD D+DF  DRR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ 
Sbjct: 372 PPDIDVDFEHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPSDQINT 431

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARL-AD-PSVDRLLEISQKLEGLYRHASTHAAGI 532
           L +      A      ++    R RE    AD P + R+L ++ +L G  RH S H  G 
Sbjct: 432 LAE------AFSRWSDSLPSPERLREYGFDADTPILKRVLALTGELIGFPRHLSQHPGGF 485

Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-Q 591
           VI + PL  LVP+     ++  + Q++   ++  GL+K D L L  L+ L+++ D +   
Sbjct: 486 VISEHPLDTLVPVENAAMAERTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLH 545

Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
           RG +  L+ +  DD ETY +++   T+G+FQ+ES      L  ++P+   D++  V++ R
Sbjct: 546 RGKRWTLADMSGDDPETYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVR 605

Query: 652 PGPIDNIVVYNN-RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           PGPI   +V+   R+  KE+ ++  P +  + + T GV ++QEQVM++A + + Y+  EA
Sbjct: 606 PGPIQGDMVHPYLRRRNKEEAITYPPKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEA 665

Query: 711 DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
           D LRRAM   K    +D  +ER  +G  KNG     A  IFE +  F  YGF +SHAA++
Sbjct: 666 DELRRAMAAWKRHGGLDPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASF 725

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
           A+++Y + W+K H P  F  A +           +  QDAR+ +I+I P  V     D  
Sbjct: 726 ALLTYASCWLKCHEPAAFTCALINSWPMGFYNPDQLLQDARRHHIEIRPVDVRYSHWDCT 785

Query: 830 VG---------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
           +          +  I   L  ++      A  I  A + +PF    D   R +   L+ R
Sbjct: 786 LEPVDHPDSTRNLAIRLGLRMLRSFREDDALRIEAARSKRPFADATDLTIRAE---LDSR 842

Query: 881 VLESLVFAGAL 891
             E+L  +GAL
Sbjct: 843 AAEALADSGAL 853


>gi|120611396|ref|YP_971074.1| DNA polymerase III subunit alpha [Acidovorax citrulli AAC00-1]
 gi|120589860|gb|ABM33300.1| error-prone DNA polymerase, DnaE-like protein [Acidovorax citrulli
            AAC00-1]
          Length = 1044

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 302/1026 (29%), Positives = 476/1026 (46%), Gaps = 88/1026 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L+  SS+S L GA   + ++++ A     A+A+TD  +L   +     A   G+Q
Sbjct: 14   PAYAELRCASSFSFLIGASHPHELVERAAQLGYTALALTDECSLAGIVRAHVAAKQCGLQ 73

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G Q         K+   G  P  T   + +L    EGY  L   ++R+    Q K +
Sbjct: 74   LLVGAQF--------KVAPDGGMPPCT---LTVLACDLEGYGNLCAFITRLRRAAQ-KGT 121

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +    L      G +++      P   +       +AE  L    + F  R ++ ++ 
Sbjct: 122  YELAARDLSGKDLAGCVVICS----PERMSAAIQLQTLAEWLL----RHFMGRCWIGVEM 173

Query: 189  HRGYDRYRESQVVQLAYTHE---LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD- 244
             R  D   E+ + +L  T E   LPLVAT +  F         D + AV     +++   
Sbjct: 174  LRQIDD--EAWLARLRATSEASALPLVATGDVHFHVRSRKPLQDTMTAVRLGRPLAECGL 231

Query: 245  --RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              +P    + +L+ R  +   +    E LE T+ +A RC F L       P     E   
Sbjct: 232  DLQPNA--ERHLRTRLRLAQTYP--AELLEETLRVAARCDFSLDELRYNYP----AEVVP 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +   + LR     G   R   G   K       ++ ++ EL++I  +++  YFL VAD
Sbjct: 284  PGETPASHLRRLTYEGAARRWPAGIPPK------VQEIVEHELSLIEDLRYEHYFLTVAD 337

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             + +A+   I +  GRGS A S   Y L +T++DP R S+LFERFL+ +R   PD DIDF
Sbjct: 338  IVDFARSRGI-LCQGRGSAANSAVCYCLHVTEVDPARMSVLFERFLSRERNEPPDIDIDF 396

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK---LI 479
               RR+EVI+Y+  KYG ER A      S + ++ALRDVG+AL      V  L K     
Sbjct: 397  ENARREEVIQYLYGKYGRERAALTAVVTSYRPRSALRDVGKALGFDEGTVSALAKDHQWW 456

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              D      LQA+  D+        D  V +LLE++++L G  RH S H  G V+   PL
Sbjct: 457  EEDSVRDEQLQALGLDAE-------DLRVRQLLELTEQLLGFPRHLSQHPGGFVLTQDPL 509

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV--KV 596
             ++VP+      D  V Q++   ++ AGL+K D L L  LT ++K+L  + Q RG+   +
Sbjct: 510  CRMVPIENAAMEDRTVIQWDKDDLDAAGLLKVDVLALGMLTAIRKALVMVGQIRGLDDAL 569

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL  IP +D  TY +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGPI 
Sbjct: 570  DLQDIPAEDPATYEMLCRADSIGVFQVESRAQMSMLPRLRPRCFYDLVVQVAIVRPGPIQ 629

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
              +V  Y +R+ G   +      +  +L  T GV ++QEQVMQ+A + +G+S  EAD LR
Sbjct: 630  GGMVHPYLDRRQGLVPVTYPSEALREVLGRTLGVPVFQEQVMQLAIVAAGFSAGEADGLR 689

Query: 715  RAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RAM   K K  ++K   + + G    G  +  A  +F  +  F++YGF +SHAA++A++ 
Sbjct: 690  RAMAAWKRKGGLEKYHAKLVDGMLARGYEREYAERVFLQVYGFSEYGFPESHAASFALLV 749

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD- 832
            Y ++W+K H+P  FLAA +  +        +  QDAR+  + +  P V     D  + D 
Sbjct: 750  YASSWIKRHHPAAFLAALLNSQPMGFYSPSQLVQDARRHGVGVRAPDVLHSGWDCTLEDL 809

Query: 833  ---NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                 +   L  + G+G   A  I  A A++PF  +ED   R     L++  L  L    
Sbjct: 810  PHAPAVRLGLRLVNGLGQAAAERIEAARAERPFQDVEDLALRA---SLDQPTLRVLAGGD 866

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL      R Q  Q  D   ++A           E +    +    D +      V++ S
Sbjct: 867  ALASLAGHRRQ--QVWDAAGQHAAPALLRDAPVGEAMLELPEAPEGDAV------VQDYS 918

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA--MVVSKQQK 1007
                     LG     HP+ + +P LR+       E +A +R +  RLAA  +V  +QQ 
Sbjct: 919  --------ALGLTLRSHPVALLRPQLRRYHTA---EQLANVR-DGFRLAACGLVTLRQQP 966

Query: 1008 KTRKGS 1013
             T KG+
Sbjct: 967  GTAKGT 972


>gi|163853972|ref|YP_001642015.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1]
 gi|163665577|gb|ABY32944.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1]
          Length = 1071

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 294/1034 (28%), Positives = 460/1034 (44%), Gaps = 98/1034 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S   LQV + +S L GA S   +    +    PA+ +TD  +L   +   Q A   G++ 
Sbjct: 6    STPELQVTTHFSFLRGASSPEELFSAASLLGIPALGVTDHGSLAGMVRAHQAAKVTGVRL 65

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+LD+D   +              P +V     A  Y RL  L+S +     GK   
Sbjct: 66   VVGCRLDLDDLSS--------------PLLVYPTDRA-AYGRLCRLLS-LGKARGGKGRC 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QR 188
            R+    L+E       +L     GP                L  FK LFG R    L +R
Sbjct: 110  RLTWRDLEEWQEGFFAILLAEHPGP-----------ALPNDLARFKGLFGARASCALTRR 158

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ----KD 244
             R  D  R   +   A    +P VAT + L+         DV+  +     + +    K+
Sbjct: 159  FRPDDADRLDALAAAARAARVPTVATGDILYHVAGRRRLQDVVTCIRLGLTIDRAGFAKE 218

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R     D +LK  +E   +F+  PEAL    EIA  C F L   A   P   E   D + 
Sbjct: 219  R---HADRFLKPPAETARLFARFPEALARAGEIAAACRFSLDDLAYTYP--TESREDGLS 273

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYFLIVA 361
             +E           L+V    GA A+ Y A   +   ++L  EL++I R+ ++ YFL V 
Sbjct: 274  PQER----------LDVLTWAGA-ARRYPAGVPEAVTRQLHHELDLIGRLAYAPYFLTVE 322

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
              + +A +  I +  GRGS A S   + L IT IDP R +LLFERF++  R   PD D+D
Sbjct: 323  SIVAFANREKI-LCQGRGSAANSAVCFCLGITSIDPTRQNLLFERFVSEARREPPDIDVD 381

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EVI+++   YG  R A        +++ ALR+VG+ + +P      L ++  +
Sbjct: 382  FEHERREEVIQWIFQTYGRHRSALTAIVSRFRSRGALREVGKVMGLPEDVTGALNRMTWS 441

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRP 538
              +  V       +   RE  L +P   RL   L I+++L G  RH S H  G V+    
Sbjct: 442  WSSEGVG------ERELRELNL-NPDDRRLRLTLAIARELIGTPRHLSQHPGGFVLTLDR 494

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L +LVP+     +D  V +++   I+    +K D LGL  L  L+++ D LA+ +    D
Sbjct: 495  LDELVPVEPAAMADRQVIEWDKDDIDALKFMKVDVLGLGMLGCLRRAFDLLAEVKNDPHD 554

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            L+ IP  D  T+ ++    TLG+FQ+ES      L  M+P    D++  V++ RPGPI  
Sbjct: 555  LASIPSKDEPTFAMIRRADTLGVFQIESRAQMAMLPRMKPKEFYDLVIEVAIVRPGPIQG 614

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D +  Y  R+ G E++    P +  +L++T GV ++QEQ MQ+A + +G+S +EAD LRR
Sbjct: 615  DMVHPYLRRREGLEEVTYPTPELKAVLEKTLGVPLFQEQAMQVAMVGAGFSATEADELRR 674

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +M   K    + + + R + G   NG ++  A   F+ L  F  YGF +SHAA++A+++Y
Sbjct: 675  SMATFKFTGGVHRFQNRLVEGMVANGYARDFAERTFKQLEGFGSYGFPESHAASFALLAY 734

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVDFKVG 831
             ++WMK H+P  F AA +  +        +  +DAR   ++I P  VN     C    +G
Sbjct: 735  ASSWMKCHHPDVFCAALLNAQPMGFYAPAQIVRDARAHGVEIRPLDVNFSQWDCTLETLG 794

Query: 832  DNRIYYS----LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
              R  ++    L    G+       ++ A   +PF SL +   R              V 
Sbjct: 795  AGRKLFAVRLGLRLASGLAERDGHRLVAARGGRPFASLPELADRAG------------VP 842

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--------AHEKGTFSDKIT 939
            A +L C    R    +SL   ++ A W  K        +F        A    T    ++
Sbjct: 843  ATSLTCL--VRADAFRSLGLNRREAAWAVKALRPDPLPLFAALSAPIQAEPAQTAEPAVS 900

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
            L   S     V    +    G     HPL   +  L  +G +          G  I +A 
Sbjct: 901  LPAMSAGGEVV---ADYCANGLSLRAHPLAFLRETLTTLGARPCAALERVGNGGAIVVAG 957

Query: 1000 MVVSKQQKKTRKGS 1013
            +V+ +Q+  + KG+
Sbjct: 958  IVLMRQRPGSAKGT 971


>gi|240141426|ref|YP_002965906.1| error-prone DNA polymerase, DNA polymerase III, alpha subunit
            [Methylobacterium extorquens AM1]
 gi|240011403|gb|ACS42629.1| error-prone DNA polymerase, DNA polymerase III, alpha subunit
            [Methylobacterium extorquens AM1]
          Length = 1067

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 291/1034 (28%), Positives = 461/1034 (44%), Gaps = 98/1034 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S   LQV + +S L GA S   +    +    PA+ +TD  +L   +   Q A   G++ 
Sbjct: 2    STPELQVTTHFSFLRGASSPEELFSAASLLGIPALGVTDHGSLAGMVRAHQAAKVTGVRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+LD+D   +              P +V     A  Y RL  L+S +     GK   
Sbjct: 62   VVGCRLDLDDLSS--------------PLLVYPTDRA-AYGRLCRLLS-LGKARGGKGRC 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QR 188
            R+    L+E       +L     GP                L  FK LFG R    L +R
Sbjct: 106  RLTWRDLEEWQEGFFAILLAEQPGP-----------ALPNDLARFKGLFGARASCALTRR 154

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ----KD 244
             R  D  R   +   A    +P VAT + L+         DV+  +     + +    K+
Sbjct: 155  FRPDDADRLDALAAAARAARVPTVATGDILYHVAGRRRLQDVVTCIRLGLTIDRAGFAKE 214

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R     D +LK  +E   +F+  PEAL    E+A  C F L   A   P   E   D + 
Sbjct: 215  R---HADRFLKPPAETARLFARFPEALARAGEVAAACRFSLDDLAYTYP--TESREDGLS 269

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYFLIVA 361
             +E           L+V    GA A+ Y A   +   ++L  EL++I R+ ++ YFL V 
Sbjct: 270  PQER----------LDVLTWAGA-ARRYPAGVPEAVTRQLHHELDLIGRLAYAPYFLTVE 318

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
              + +A +  I +  GRGS A S   + L IT IDP R +LLFERF++  R   PD D+D
Sbjct: 319  SIVAFANREKI-LCQGRGSAANSAVCFCLGITSIDPTRQNLLFERFVSEARREPPDIDVD 377

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EVI+++   YG  R A        +++ ALR+VG+ + +P      L ++  +
Sbjct: 378  FEHERREEVIQWIFQTYGRHRSALTAIVSRFRSRGALREVGKVMGLPEDVTGALNRMTWS 437

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRP 538
              +  V       +   RE  L +P   RL   L I+++L G  RH S H  G V+    
Sbjct: 438  WSSEGVG------ERELRELNL-NPDDRRLRLTLAIARELIGTPRHLSQHPGGFVLTLDR 490

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L +LVP+     +D  V +++   I+    +K D LGL  L  L+++ D LA+ +    D
Sbjct: 491  LDELVPVEPAAMADRQVIEWDKDDIDALKFMKVDVLGLGMLGCLRRAFDLLAEVKNDPHD 550

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            L+ IP  D  T+ ++    TLG+FQ+ES      L  M+P    D++  V++ RPGPI  
Sbjct: 551  LASIPSKDEPTFAMIRRADTLGVFQIESRAQMAMLPRMKPKEFYDLVIEVAIVRPGPIQG 610

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D +  Y  R+ G E++    P +  +L++T GV ++QEQ MQ+A + +G+S +EAD LRR
Sbjct: 611  DMVHPYLRRREGLEEVTYPTPELKAVLEKTLGVPLFQEQAMQVAMVGAGFSATEADELRR 670

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +M   K    + + + R + G   NG ++  A   F+ L  F  YGF +SHAA++A+++Y
Sbjct: 671  SMATFKFTGGVHRFQNRLVEGMVANGYARDFAERTFKQLEGFGSYGFPESHAASFALLAY 730

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVDFKVG 831
             ++WMK H+P  F AA +  +        +  +DAR   +++ P  VN     C    +G
Sbjct: 731  ASSWMKCHHPDVFCAALLNAQPMGFYAPAQIVRDARAHGVEVRPLDVNFSQWDCTLESLG 790

Query: 832  DNRIYYS----LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
              R  ++    L    G+     + ++ A   +PF SL +   R              + 
Sbjct: 791  SGRKLFAVRLGLRLASGLAERDGQRLVAARGGRPFASLPELADRAG------------IP 838

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--------AHEKGTFSDKIT 939
            A +L C    R    +SL   ++ A W  K        +F        A    T    ++
Sbjct: 839  AASLTCL--VRADAFRSLGLNRREAAWAVKALRPDPLPLFAALSAPIQAEPAQTAEPAVS 896

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
            L   S     V    +    G     HPL   +  L  +G +          G  I +A 
Sbjct: 897  LPAMSAGGEVV---ADYCANGLSLRAHPLAFLRETLTTLGARPCAALERVGNGGAIVVAG 953

Query: 1000 MVVSKQQKKTRKGS 1013
            +V+ +Q+  + KG+
Sbjct: 954  IVLMRQRPGSAKGT 967


>gi|190410010|ref|YP_001965534.1| probable DNA polymerase III alpha chain [Sinorhizobium meliloti]
 gi|125631040|gb|ABN47041.1| probable DNA polymerase III alpha chain [Sinorhizobium meliloti SM11]
          Length = 1085

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 285/1030 (27%), Positives = 473/1030 (45%), Gaps = 94/1030 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  LQV + +S L GA S   + +   A    A+ + D N+L   +   + + A G++ 
Sbjct: 2    SYAELQVTTHFSFLRGASSAQELFETAKALGIEALGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+LD  +QD +              S++        Y RL  L++    L + +   
Sbjct: 62   VVGCRLD--LQDGM--------------SVLAYPIDRAAYSRLTRLIT----LGKSRGGK 101

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              C+    ++    +G+I +      P D         V   +L    ++FGDR YV+L 
Sbjct: 102  NNCILHWDDVAAYNDGMIGILV-PDLPDD---------VCAIQLRKMAEVFGDRAYVSLC 151

Query: 188  -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK--D 244
             R R  D+ R  ++  LA   ++  V TN+ LF      +  D++  +   T + +   +
Sbjct: 152  LRRRQNDQLRLHEISNLAARFKVKTVVTNDVLFHEPGRRQLQDIVTCIRTRTTIDEVGFE 211

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R   D YLK   EM  +F   P+AL  T+EI RRC+F L+      P    +E     
Sbjct: 212  RER-HADRYLKPPEEMERLFPRYPQALARTLEIVRRCTFSLEELTYQYP----EEAIVPG 266

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K+ +  L +     +  R  +G         D  + +  EL++I  MK++ YFL V   +
Sbjct: 267  KDAQASLEHYVWQCVPDRYPEGL------PPDVLKVVRHELDLIRTMKYAPYFLTVFSIV 320

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  
Sbjct: 321  RYARSQGI-LCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEH 379

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI+++   Y  E+ A   T    +A+ A+RDVG+AL +P   +  L         
Sbjct: 380  ERREEVIQWIYRTYTREKAALCATVTRYRARGAIRDVGKALGLPEDVIKALSS------- 432

Query: 485  HPVSLQAIAD---DSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRP 538
                + A ++   D   RE  L +P   RL   L+++Q+L G  RH   H  G V+    
Sbjct: 433  ---GMWAWSEEVCDRNVRELNL-NPDDRRLVLTLKLAQQLMGAPRHLGQHPGGFVLTHDR 488

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L  LVP+      D  + +++   +E    +K D L L  LT + K+ D + + +   +D
Sbjct: 489  LDDLVPIEPATMKDRQIIEWDKDDVEALKFMKVDILALGMLTCMAKAFDLIREHKDRDLD 548

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            LS I  +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 549  LSDIEQEDPATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQG 608

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D +  Y  R+ GKE +    P ++ +L +T GV ++QE  M++A + +G++  EAD LR+
Sbjct: 609  DMVHPYLRRREGKEAVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRK 668

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +M   K    + + K++ +SG  +NG +   A   F  L  F  YGF +SHAA++A+I+Y
Sbjct: 669  SMATFKFTGGVSRFKDKLVSGMVRNGYTPEFAEKTFSQLEGFGSYGFPESHAASFALIAY 728

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVDFKVG 831
             ++++K HYP  F AA +  +        +   DAR   +++ P  +N     C   ++G
Sbjct: 729  ASSYIKCHYPEAFCAALVNSQPMGFYAPAQIVGDARAHGVEVRPVCINRSRWDCTLERIG 788

Query: 832  D---NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            D   + +      +KG+       I+ A  D  F S++D   R           E+LV  
Sbjct: 789  DSGRHAVRLGFRQVKGLAVAETARIVAARMDNAFASVDDMWRRSGVSS------EALVQL 842

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
               D F       L S+   ++ A W  K   ++   +FA         I  E+   E +
Sbjct: 843  AKADAF-------LPSMKLERRDALWAIKALRDEPLPLFAAAAKREMAAIA-EQQEPEVA 894

Query: 949  SVRFENEQRVL------GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
              +  +   V+      G     HP+   +  L    I    E++ +  G  +  A +V+
Sbjct: 895  LRQMTDGHNVIEDYSHTGLTLRQHPIAFLRKDLSVRNIITCAEAMNSRDGRWVYTAGLVL 954

Query: 1003 SKQQKKTRKG 1012
             +Q   + KG
Sbjct: 955  VRQMPGSAKG 964


>gi|319442936|ref|ZP_07992092.1| error-prone DNA polymerase [Corynebacterium variabile DSM 44702]
          Length = 1080

 Score =  347 bits (891), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 294/1054 (27%), Positives = 481/1054 (45%), Gaps = 149/1054 (14%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L    SY+ L GA   ++++         A+A+ D +  + A  F+  A   G+  +
Sbjct: 61   FAELHAAGSYNFLRGAGEPDDMVATARRLGLTALALVDRDGFYGAARFATAAAEQGMPTV 120

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L         +   G+ P      + +L    EGY+RL  +++  +L   G +  +
Sbjct: 121  FGAEL--------SLGGTGRAP------LTVLCRGQEGYRRLSHVLTDAHLGTDGHRD-K 165

Query: 131  ICLSW--LQEIGTEG----LIMLTGGSSGPIDRAF-FFNSSQVAEKRLLTFKKLFGDRLY 183
              L++  L  +  +     L+++   +   + R    F ++    +  LT      DR  
Sbjct: 166  ETLTYPDLPTLAAQADGHWLVLIDHRNRDAVSRIIDAFGTAHCVIELQLTMSPADADRNA 225

Query: 184  V--NLQRHRGYDRYRESQVVQLAYTHELP----LVATNNSLFLSEEDYEAHDVLMAVAHS 237
               +L   RG       ++V  A T   P    L     +L    +  + HD    V H 
Sbjct: 226  ALHDLAVARGL-----REIVSTAATCPTPASSRLAGAKAAL---HDRLDVHDA-APVTHP 276

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQVHAPILPR 294
               S           +L +  EMV++  D   L +A+  +V++A  C+F L + AP LP 
Sbjct: 277  LGGS-----------WLHSGEEMVAMAGDCDWLRQAVATSVDVAAECTFTLNLVAPELPH 325

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQ--GAIAKGYHAQDYR--QRLDFELNVIAR 350
                   D+ +   +        G  V L +  G    G  A + R  + +D EL VI  
Sbjct: 326  A------DVPEGYTD-------MGWLVELTRLGGEERYGTRATNPRAWEVIDHELEVIEG 372

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            + F GYFLIV D + + +++ I    GRGS A S   +AL IT++D +   LLFERFL+P
Sbjct: 373  LGFPGYFLIVHDIVDFCRRSGI-FCQGRGSAANSAVCFALGITNVDAVAADLLFERFLSP 431

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R   PD D+D    RR+EVI+YV  +YG +  AQ+    + + K ALRD  RAL     
Sbjct: 432  ERDGPPDIDLDIESTRREEVIQYVYRQYGRDNAAQVANVITYRRKGALRDAARALGHDPG 491

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            +VD   + + + PA                          + +++ +L    RH   H+ 
Sbjct: 492  RVDAWSRRVEDPPA-------------------------VVTDLASQLIDQPRHLGIHSG 526

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VI DRP++ +VP+    ++D  V Q++       GL+KFD LGL  L  L   +D + 
Sbjct: 527  GMVICDRPVADVVPVEWARKTDRSVVQWDKDDCAAVGLVKFDLLGLGMLEALHHCVDLVE 586

Query: 591  Q-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            +  G +V+L  +   D E Y +L+    +G+FQ+ES      L  ++P    D++  VSL
Sbjct: 587  ETTGSRVELWQLTPTDPEVYAMLSRADAVGVFQVESRAQLATLPRLKPRTFYDLVVEVSL 646

Query: 650  YRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             RPGPI    V  Y  R+NG+E++   HP ++P+L  T G+ ++QEQ+MQ+A + +G+S 
Sbjct: 647  IRPGPIQGGSVHPYIRRRNGEEEVTYDHPCLEPVLARTLGIPLFQEQLMQLAVVAAGFSP 706

Query: 708  SEADVLRRAMG-KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSH 765
            +EAD LRRAMG K+  E+M   + RF++G ++ NG+   +A  ++E +  FA YGF +SH
Sbjct: 707  AEADTLRRAMGSKRSPEKMAAMRSRFLAGCAELNGLVGEVAERLWEKIIAFASYGFPESH 766

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A ++A + Y +AW K H+P EF  A +  +       +    DAR+  + ++P  VN   
Sbjct: 767  AQSFASLVYFSAWFKCHHPAEFCVALLRAQPMGFYSPQSLISDARRHGVPVLPVDVNVSG 826

Query: 826  VDFKV------GDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKL 877
            V+  V      GD   I   LA+++G+G+  A  ++EA      F ++ D  SR     +
Sbjct: 827  VEAGVEKVEDAGDAWAIRPGLASVRGLGSEAASDLVEARGRVGMFRTVADL-SREAGLGV 885

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            +R V  +L  AGA D  G +R Q           A W       +   +        +  
Sbjct: 886  DRVV--ALARAGACDSLGLTRRQ-----------AVWAAGQAATERPGMLPGTSVASTPA 932

Query: 938  IT-LEKFSVENSSVRFENEQRVLGFYFSGHP-------LDVYK---PILRKMGIKGYEES 986
            +  +  F +  + +         G    GHP       LD +    P++    +   E+ 
Sbjct: 933  LPGMSAFELAAADI------AATGVTTDGHPVRLLRERLDAWPGPFPVVPASSLLSVED- 985

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                 G  IR+A +V  +Q+  T  G     VTF
Sbjct: 986  -----GRRIRVAGVVTHRQRPMTAGG-----VTF 1009


>gi|114570381|ref|YP_757061.1| DNA polymerase III subunit alpha [Maricaulis maris MCS10]
 gi|114340843|gb|ABI66123.1| error-prone DNA polymerase, DnaE-like protein [Maricaulis maris
            MCS10]
          Length = 1093

 Score =  347 bits (890), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 293/1038 (28%), Positives = 465/1038 (44%), Gaps = 96/1038 (9%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S ++  L   S++S L GA   + ++    A    AI + D N+L   +   + A  AG+
Sbjct: 2    SETYAELVAASNFSFLRGASHPDEMVLAAKALGLAAIGLCDRNSLAGVVRAHKAAKKAGM 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
               IG +L       L    + +                  Y RL    SR+  L + + 
Sbjct: 62   TLCIGTRLVTRCGFELATYPRDRA----------------AYARL----SRLLTLGKRRT 101

Query: 128  SVRICLSWLQEI--GTEG--LIMLTGGSSGP--IDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                C   L+++    EG   I+L     GP   D A  F ++       L         
Sbjct: 102  VKGKCDLGLEDVLDHAEGQVFILLPPADPGPDWQDTARHFCAAAPDGACHLALA------ 155

Query: 182  LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
                 QR  G D  R  ++   A    LPL+AT ++L+ + E     D L  +   T + 
Sbjct: 156  -----QRFDGQDGARVFRLTGFAGQTGLPLIATTDALYHTPERRALQDALTCIREKTTID 210

Query: 242  QKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                R     + +LK  +EM  +F+  PEA+ NT+ +ARR  F L   A   P  I +  
Sbjct: 211  TAGFRLEAHAERHLKPPAEMARLFAAHPEAVANTMHLARRLRFSLDEIAYQYPDEIMEPG 270

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +   +      R KAV     R   G   K   A      +++EL +I ++ ++ YFL V
Sbjct: 271  ETAMQTLTRLSREKAV----WRYPDGIPDKVAAA------IEYELTLIRQLDYAPYFLTV 320

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D ++ A+   I +  GRGS A S   Y L IT +DP R  LLFERF++ +R   PD D+
Sbjct: 321  YDIVRHARSRGI-LCQGRGSAANSTICYCLGITSVDPARIDLLFERFVSAERNEPPDIDV 379

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI+Y+  KYG  R     T  + ++K A+RD+G+A+ +    +D L + + 
Sbjct: 380  DFEHERREEVIQYIYGKYGRHRAGMTATVTTYRSKGAIRDIGKAMGLSPDLIDALARAV- 438

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDR 537
                H  S      D R   A   DP   RL   + + ++L G  RH S H  G VI   
Sbjct: 439  ---WHGSSAGVPEADIR---AMALDPDEQRLALAMRLVRELIGFPRHLSQHPGGFVITRD 492

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKV 596
             L  +VP+     +D  + +++   IE  GL+K D LGL  L+++ K+L  L +  G + 
Sbjct: 493  RLDDIVPVMNAAMADRTMIEWDKDDIETLGLMKVDVLGLGMLSVIAKALALLREAYGRRE 552

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI- 655
             L+ +  +D   Y ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI 
Sbjct: 553  SLASLQDEDPRVYDMICEADTVGVFQIESRAQMSMLPRLKPRQFYDLVIEVAIVRPGPIQ 612

Query: 656  -DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
             D +  Y  R+ G+E+I    P +  +L  T GV ++QEQ M+IA + +G++ +EAD LR
Sbjct: 613  GDMVHPYLRRREGRERIDYPSPELKAVLGRTLGVPLFQEQAMKIAVVAAGFTPAEADGLR 672

Query: 715  RAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RAM   +    + + + RF+ G  KNG +   A   F+ +  F +YGF +SHAA++A++ 
Sbjct: 673  RAMATFRHAGIIHEFRHRFLEGMIKNGYAPEFAERCFKQIEGFGEYGFPESHAASFALLV 732

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK---- 829
            Y +AW+K HYP  F  A +  +        +  +DAR+  + I PP +N    D      
Sbjct: 733  YVSAWLKCHYPDVFCTAILNAQPMGFYAPAQLVRDAREHGVDIRPPDINHSAWDCTLEAG 792

Query: 830  ------VGDNR-------IYYSLAAIKGV-GTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                  V  NR       +   L  +KG+     AR ++   A   F  +E    R    
Sbjct: 793  SEPGPDVRPNRKGAHQYAVRLGLRQVKGLADAAAARIVVARQAGGHFICVESLMRRA--- 849

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-F 934
             L+RR L+ L  A A+   G  R           + A W           +FA  +G   
Sbjct: 850  ALSRRALDQLANADAMRSLGQDR-----------RAASWQAAGLATSALPLFAAGEGAET 898

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
            ++  T        +S +   + R LG    GHPL  ++  L + G+           G+ 
Sbjct: 899  ANGETPPPLPDMPASEQVYRDYRSLGLSLKGHPLGFFRQALSERGLVEARALKTLPNGSQ 958

Query: 995  IRLAAMVVSKQQKKTRKG 1012
            I LA +V+ +Q+  +  G
Sbjct: 959  IDLAGLVLIRQRPGSASG 976


>gi|330399560|ref|YP_004030658.1| DNA polymerase III subunit alpha [Burkholderia rhizoxinica HKI 454]
 gi|312170297|emb|CBW77336.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia
           rhizoxinica HKI 454]
          Length = 1091

 Score =  347 bits (890), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 267/901 (29%), Positives = 426/901 (47%), Gaps = 84/901 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  LQ  S++S L GA     ++ + A     A+AITD  ++   +    +A   G+ 
Sbjct: 57  PEYAELQCASNFSFLYGASHPEELVARAAQLGYTALAITDECSVAGVVRAHLEAKKVGLP 116

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL--LVSTAEGYQRLIELVSRMYLLDQGK 126
            I+G Q  +          QG+      P++ L  L    +GY  L E ++ +  +   K
Sbjct: 117 LIVGAQFRL---------AQGQA----APAMALSALAMNRDGYGNLCEFIT-LGRMRGDK 162

Query: 127 QSVRI-C--LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            + R+ C  L+    +   G  +                     E +L      FG R+ 
Sbjct: 163 GTYRLSCDDLAHADAVDRHGCALSHC-------LVILHPDYPAHEAQLTWAAPHFGSRIA 215

Query: 184 VNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           V L  H +  D      V ++A  H + +VAT              DV+ A+     VS 
Sbjct: 216 VALTLHAQAMDDLHRGVVQRVAARHGVRVVATGAVRMHVRSRKPLQDVVTAIRLGQSVSA 275

Query: 243 KDRPRVTPD--HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                + P+   +L+ R  + +++    + LE TV +AR+C+F L               
Sbjct: 276 CGY-HLAPNAQQHLRARLRLANVYPR--DTLEATVHLARQCTFSL--------------- 317

Query: 301 DDIQKEEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
           D+++ E   EL           R +A  G   R   G           +Q+L+ EL +IA
Sbjct: 318 DELRYEYPEELVPNGHSATTYLREQAYLGAHRRFPNGI------PMTVQQQLEHELALIA 371

Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +++  YFL V D + +A+   I +  GRGS A S   Y L IT++DP R +LLFERF++
Sbjct: 372 TLRYEPYFLTVYDIVHFARSQGI-LCQGRGSAANSAVCYCLGITEVDPARSNLLFERFVS 430

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            +R   PD DIDF   RR+EVI+Y+  KYG ER A      + + ++ALRD G+AL +  
Sbjct: 431 RERNEPPDIDIDFEHQRREEVIQYLYRKYGRERAALTAAVTTYRPRSALRDAGKALGIDP 490

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHAST 527
             VDR+ K   +      S Q +    RF +A L    P +++   ++  L G  RH S 
Sbjct: 491 LIVDRVAK---SHQWFDTSAQLL---KRFEDAGLDTCAPIIEQWATLAATLLGFPRHLSQ 544

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           H+ G VI    LS+LVP+      D  V Q++   I+  GL+K D L L  L++++++L 
Sbjct: 545 HSGGFVISRGKLSRLVPIESAAMPDRSVIQWDKNDIDALGLLKIDILALGMLSVIRRALA 604

Query: 588 FLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            +A QRG   +L  IP +D  TY +++   T+G+FQ+ES      L  ++P C  D++  
Sbjct: 605 LVAHQRGEPFELHDIPAEDAATYEMISRADTVGVFQIESRAQMSMLPRLRPRCFYDLVIE 664

Query: 647 VSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
           V++ RPGP+   +V  Y  R+ G E +      +   L  T GV I+QEQVMQ+A L +G
Sbjct: 665 VAIVRPGPVQGGMVHPYLRRREGVEPVTYPSEAMRTALARTLGVPIFQEQVMQVAMLAAG 724

Query: 705 YSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
           ++  EAD LRRAM   + +  +++  ER + G    G  +  A +IF  +  F +YGF +
Sbjct: 725 FTAGEADQLRRAMAAWRSQGGLEQYYERIVHGMVTRGYDRAFAESIFAQIQGFGEYGFPE 784

Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
           SHAA++A++ Y +AW+K H P  FL A +  +        +  QDAR+  ++++P  V  
Sbjct: 785 SHAASFALLVYVSAWLKCHAPAAFLCALLNSQPMGFYTPSQLVQDARRHGVKVLPVDVTI 844

Query: 824 PCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
              D  +  +     +   L+ I+G+    A  I  A A +PF  + D   R    +L R
Sbjct: 845 SDWDSTLQGHSLEAPVRLGLSLIRGLAEDAAARIELARAVRPFADVTDLARRA---QLTR 901

Query: 880 R 880
           R
Sbjct: 902 R 902


>gi|309807095|ref|ZP_07701074.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
           03V1-b]
 gi|308166525|gb|EFO68725.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
           03V1-b]
          Length = 658

 Score =  347 bits (890), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 226/666 (33%), Positives = 351/666 (52%), Gaps = 33/666 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6   LQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
           QL I+      + N+ +        ++++     GYQ ++ L S + L+ + GK+ + + 
Sbjct: 66  QLRIN-----GLINENQNF-----DLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRHR 190
           L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLVKILPQSSNLYLGVFADK 174

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
               Y  S V  L+    L LVA  +  ++   D    +VL ++  +   S +D   +T 
Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLKSIDDNQ--SIRDGYELTL 231

Query: 250 ---PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               +HYLK + ++   ++ L   EAL NT +++   +  ++   P LP+FI+ + D   
Sbjct: 232 KHVGNHYLKTKDKLCESYNSLGILEALRNTKQVSDDSNVEIKFTMPQLPKFIQHKFD--- 288

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                 L + A+ GL+ +  +  I        Y  RL +EL +I  M F+ YFLIV D I
Sbjct: 289 -TSYEFLHHLAMTGLQAKFNKHDIP-----SKYLNRLKYELKIIDEMGFNDYFLIVWDVI 342

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +     I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   
Sbjct: 343 NYCHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPD 402

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           +RR+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       +D   K IP   +
Sbjct: 403 NRRNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITIDSWLKAIPKSKS 462

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V 
Sbjct: 463 KITLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVG 522

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
           + ++    +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP D
Sbjct: 523 L-QNGSLGIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLD 581

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D  T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  R
Sbjct: 582 DPATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRR 641

Query: 665 KNGKEK 670
           K  K++
Sbjct: 642 KIRKKR 647


>gi|294665463|ref|ZP_06730748.1| DNA polymerase III alpha chain [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
 gi|292604762|gb|EFF48128.1| DNA polymerase III alpha chain [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
          Length = 1065

 Score =  347 bits (890), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 275/1039 (26%), Positives = 475/1039 (45%), Gaps = 93/1039 (8%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q  +  P++  L   S +S L GA S   +  +       A+AITD  +L   +   + 
Sbjct: 21   AQQADDLPAYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEA 80

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            + A G++ I+G +    + D +++              VLLV  A GY +L  L++    
Sbjct: 81   SRATGVRLIVGSEFT--LVDGIRL--------------VLLVENAHGYPQLCGLIT---- 120

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                  + R        +G    +        P   A +   +Q   ++    +++FG+R
Sbjct: 121  -----TARRAASKGAYHLG-RAEVQAQFRDVVPGVFALWLPGAQPQAEQGAWLQQVFGER 174

Query: 182  LYVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ ++ HR  D     QV+Q LA    +  +A+ +       +    D L A+ H+  +
Sbjct: 175  AFLAVELHREQDDVARLQVLQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRHTLPL 234

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            ++         + +L+ R  + +I+ D    L+ TVE+++RC+F +   +   PR +  E
Sbjct: 235  AECGAHLFRNGERHLRTRRALGNIYPD--ALLQATVELSQRCTFDISKISYTYPRELVPE 292

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                     + LR    AG+  R   G  AK       R+ ++ EL +IA   +  +FL 
Sbjct: 293  ----GHTPTSYLRQLTEAGIRKRWPGGISAK------VREDIEKELALIAFKNYEAFFLT 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++A+  +I +  GRGS A S   YAL IT ++P    LL  RFL+  R   PD D
Sbjct: 343  VQDVVRFARDQDI-LCQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDID 401

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EV++YV +KYG ER A   T    + K+A+RDV +A  +P  Q+  L    
Sbjct: 402  VDFEHERREEVLQYVYSKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCY 461

Query: 480  P-NDPAHPVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
               +   P+       + R  EA   LA+P ++++L +++ L    RH S H  G VI D
Sbjct: 462  GWGNGETPM-------EQRIEEAGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISD 514

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK 595
             PLS LVP+      +  + Q++   +E   L+K D L L  LT ++K+L+ +   RG  
Sbjct: 515  EPLSLLVPVENAAMPNRTIIQWDKDDLETMQLLKVDCLALGMLTCIRKTLELVRGHRGRN 574

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              ++ +P DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 575  YSIATLPGDDAPTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPI 634

Query: 656  --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              D +  Y  R+ G+E++    P ++ +LK T GV ++QEQVM++    + YS  EAD L
Sbjct: 635  QGDMVHPYLRRRQGREEVNYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYSEDEADNL 694

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RR+M   +   +M++ + R        G + +    IFE +  F  YGF +SHAA++A +
Sbjct: 695  RRSMAAWRRGGDMEQHRTRVRERMQGKGYASSFIDQIFEQIKGFGSYGFPQSHAASFAKL 754

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-----IQIMPPSVNTPCVD 827
             Y + W+K H P  F    +  +        +  QDAR+ +     ++++P  V     D
Sbjct: 755  VYASCWLKRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWD 814

Query: 828  FKVGDNRIYYSLA-------------AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
              +   R + S A              + G+    A+ I+ A   + F  + D C R   
Sbjct: 815  NTLVGGRPWRSAADPGEQPAIRLGMRQVAGLSQVVAQRIVAARTQRAFADIGDLCLRA-- 872

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
              L+ +   +L  AGA           LQ +   +  A+W       +   +     G+ 
Sbjct: 873  -ALDEKARLALAEAGA-----------LQGMVGNRNAARWAMAGVEARRPLL----PGSP 916

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    +F    +      + R +G     HP+ + +P +R+  I G  E      G+ 
Sbjct: 917  EERPV--EFEAPRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRRHGSG 974

Query: 995  IRLAAMVVSKQQKKTRKGS 1013
            + +A +V  +Q+  T KG+
Sbjct: 975  VHVAGLVTQRQRPATAKGT 993


>gi|319937869|ref|ZP_08012269.1| hypothetical protein HMPREF9488_03105 [Coprobacillus sp. 29_1]
 gi|319806775|gb|EFW03414.1| hypothetical protein HMPREF9488_03105 [Coprobacillus sp. 29_1]
          Length = 734

 Score =  347 bits (890), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 218/645 (33%), Positives = 349/645 (54%), Gaps = 49/645 (7%)

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D DF    R  ++ YVQ KYG++ V+QI+T+  L  K+ +R+VG+ L +PY   D L 
Sbjct: 2    DIDTDFQNQYRHVIVEYVQAKYGYDHVSQIVTYNMLGLKSIIRNVGKVLGIPYLVTDELS 61

Query: 477  KLIPNDPAHPV---------------SLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            K +P      V               +L+ +     F+E   +   V +L +I +  +GL
Sbjct: 62   KNVPKKIRKFVYLEEEDREEEQEIEPTLEDLKTIPFFKERIDSSEDVAQLFKIGKLFDGL 121

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
                  HA G++IG  PL Q V +       + VTQF  K  E  GL+K DFLGL TL +
Sbjct: 122  PSSTGKHACGVIIGAHPLHQYVGLME--VDGVLVTQFEKKASESIGLLKMDFLGLITLDI 179

Query: 582  LQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
              ++L  + + +G+++DL  IP DD +T+ LL    +  +FQLES GMR  L+ MQP  +
Sbjct: 180  EVETLRLIKKNKGIEIDLDKIPLDDTKTFELLQRGQSGKVFQLESQGMRNLLKKMQPTDM 239

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
              IIA+ +L+RPGP+  I  Y        K+   HPL +   KET G+++YQEQ+MQ+ Q
Sbjct: 240  SHIIAIAALFRPGPMQFIDNYIEGMKTPSKVKYPHPLYENSAKETFGILVYQEQIMQVVQ 299

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             ++G+SL EAD+LRR +GKK K+ +D+ +E F      NG+ +  A  ++ ++ KFA+YG
Sbjct: 300  DMAGFSLGEADILRRGIGKKDKQYIDQMEEEFSKRCVDNGVPEKTAKEVYAMIKKFAEYG 359

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSH+AAYA+I+Y+TA++K +YPVEF+AA+ T+  DN +K+     + +   I+I+P S
Sbjct: 360  FNKSHSAAYALIAYETAYLKAYYPVEFMAANCTINSDNKDKLISCLAEIKAMGIEILPSS 419

Query: 821  VNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            +      F V    G + I Y    I G+G   A+ I   S  + F    DF S+  + +
Sbjct: 420  IRFSQTKFTVEKSEGQSAIRYGYIGIDGIGEDIAKTIETLSNCETF---YDFISQCPNIR 476

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             N+  + +L+++G  D FG  R ++ +   +I +  ++        H  I +  K +  D
Sbjct: 477  NNQ--ITNLIYSGTFDIFG-CRKKMREIAPSILETVKY--------HNQIKSIYKSSILD 525

Query: 937  KITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-- 991
             ++ E F   +      + +NE+RVL    SGHPL+  + +L     KGY+  ++ I+  
Sbjct: 526  GLSGEAFYDGTEYGFKEKLDNEKRVLHCCISGHPLEQIRGVL-----KGYDTLISDIQDL 580

Query: 992  --GNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
              G++I++   + S QQ  T+K G  + ++   +     EA  FP
Sbjct: 581  NDGDDIQILCQINSIQQIFTKKSGEPMAFLKIEDEYDFCEAIVFP 625


>gi|226357664|ref|YP_002787404.1| DNA polymerase III alpha subunit; Error-prone DNA polymerase dnaE2
            [Deinococcus deserti VCD115]
 gi|226319655|gb|ACO47650.1| putative DNA polymerase III alpha subunit; putative Error-prone DNA
            polymerase dnaE2 [Deinococcus deserti VCD115]
          Length = 1058

 Score =  347 bits (890), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 303/1034 (29%), Positives = 478/1034 (46%), Gaps = 94/1034 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L   S +S     +S   ++ + A     A+ + D  ++  A+E  + A AAG+  ++
Sbjct: 15   VLLACQSYFSEGRSTVSPRRLVQRAADAGYSAVGLADWCSVAGAVELGEAARAAGLAALV 74

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G  L +            ++P P  P  +VLL     GY  L  L++ +    QG+    
Sbjct: 75   GVTLPV------LFPAPPRSPAPYEPYPVVLLARDRPGYAVLCRLITDV----QGQYPGG 124

Query: 131  ICLSWLQEIGTE---GLIMLTGGSSG---------PIDRAFFFNSSQVAEKRLLTFKKLF 178
            + LS LQE G +    L+ LTGG +G          + RA F+         L T + +F
Sbjct: 125  LPLSLLQETGRQFQDHLLCLTGGRTGFPTVLGEQREVARAAFY---------LRTLRGIF 175

Query: 179  GDRLYVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
               LYV L      +  R  + ++ LA   ELP+VA          DY   D L      
Sbjct: 176  PFSLYVQLYHGAAPNERRRLEYLRGLARDLELPVVAAPEVCMADAADYCLLDALTCARLG 235

Query: 238  TVV--SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
              V     DRPR    H      E        P+AL N   IA  C+F L    P   R 
Sbjct: 236  IDVQTPHPDRPRNDARHV--GTPEEWGHLLPFPDALLNAERIADWCTFEL---LPERLRS 290

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
             E      Q  +E  L  +  A +  R + GA           +RL  EL  +A +  +G
Sbjct: 291  PEPRLRPFQTAQEV-LEERVFAAVGSRYSPGAREAAL------RRLKDELATVAHLDLAG 343

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            +FL  A+   + +++ I +  GRGS AGSV  Y L IT  DP+  +LLFERFL+  R SM
Sbjct: 344  FFLTAAEVTDYCREHGI-LAAGRGSAAGSVLCYLLGITLSDPIEHNLLFERFLHTGRTSM 402

Query: 416  PDFDIDFCQDRRDEVIRYVQNKY-----GHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            PD DID    RRD+V+R+V+ ++     G   VA  IT+   + K+A++D+GRAL MP  
Sbjct: 403  PDVDIDIASARRDQVLRWVEERWGLSGAGEAMVANRITY---RMKSAIQDLGRALGMPPD 459

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE-GLYRHASTHA 529
              DRL + +  D  H    +A   +  F E     P  + LL + +++E G  RH + H+
Sbjct: 460  LRDRLSRALGRDYGHLRPHRAREAEVAFTEVLGDAPVKEALLCLLERIEPGFVRHLAPHS 519

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G+V+   PL+   P+ R     + +  F+   +EK GLIK D LGL+ L  L+++ + +
Sbjct: 520  GGVVLSSEPLTFYSPLTRS-SGGIRMLTFDKDDVEKLGLIKLDLLGLRMLAALERAREEV 578

Query: 590  AQRGVKVDLSLIPF----DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
                +++    +P+    DD   +  +++  T+G+FQ+ES    Q    +QP  +  +  
Sbjct: 579  ----LRLTNEWVPYGELPDDPRVWAEISSGDTMGLFQIESPAQVQMTARLQPKTMTQLAH 634

Query: 646  LVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
             V+L RPGPI +  V  Y  R  G+E +      +  +L+ T G +++QEQ+++IA   +
Sbjct: 635  QVALVRPGPIQSGTVHPYVRRARGEEPVPERPEPLQSILRATHGTLMFQEQILRIAVHYA 694

Query: 704  GYSLSEADVLRRAMGK-KIKEEMDKQKERFISGAS-KNGISKTIAVNIFELLAKFADYGF 761
            GY    AD  R  + K +   E+ + KE+F+SGA+   G     A  +FE+ A F  YGF
Sbjct: 695  GYDWPHADRFRSRLSKVEDGHELAELKEQFLSGAALTCGAFPWEAEEVFEMCAMFRGYGF 754

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SHA A+A  SY +A+M+ HYP  + AA +T E   +       Q+ R+  + ++P  +
Sbjct: 755  AESHAHAFAQHSYASAYMRHHYPAAYFAAFLT-EAPGMWPANTIAQECRRRGVTLLPVCI 813

Query: 822  NTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNR 879
            N   + ++    R I   L A++G+    AR I+ E      F +LED   R+D   L+R
Sbjct: 814  NRSGLSYRAESLRTIRVPLTAVEGISEAKAREIVHERLIGGKFSTLEDAYDRID---LSR 870

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
               E LV AG L     SR + L  L  +    +              A  +   +  I 
Sbjct: 871  DRFEKLVLAGGLTSIEPSRRKGLFGLTLLANARK--------------AGTRPLLAPGIE 916

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSG-HPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
              +    +S+     + R  G   +G HPLD ++  LR +G +          G+   +A
Sbjct: 917  PPELPEMSSTEYLALDLRTKGLSETGRHPLDAHRARLRDLGCQALG---GLNHGDTAWVA 973

Query: 999  AMVVSKQQKKTRKG 1012
             ++V++Q+  T KG
Sbjct: 974  GVIVARQRPPTAKG 987


>gi|82703712|ref|YP_413278.1| DNA polymerase III, alpha subunit [Nitrosospira multiformis ATCC
            25196]
 gi|82411777|gb|ABB75886.1| error-prone DNA polymerase, DnaE-like protein [Nitrosospira
            multiformis ATCC 25196]
          Length = 1040

 Score =  347 bits (890), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 291/1042 (27%), Positives = 481/1042 (46%), Gaps = 116/1042 (11%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  L   S+++ L+GA     ++++ A     A+AITD  ++   +    +A   G+
Sbjct: 5    APDYAELHCCSTFNFLKGASMPEELVERAATLGYSALAITDECSMAGVVRAHAEAKKTGL 64

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
              +IG +    ++D L++              V L    EGY  L EL++ +      K 
Sbjct: 65   HLLIGSEFV--LEDGLRL--------------VGLAMNREGYGNLCELIT-LARQRSAKG 107

Query: 128  SVRICLSWLQEIG--------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            + RI  +  +            + LI+L       I R    + S V + R +  + LF 
Sbjct: 108  TYRITRADFESCTDAPHLARLPDCLILL-------IPRRNQADGSWVEDMRWV--RSLFP 158

Query: 180  DRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             R +++++R  H G + + E ++   A T  +PLVA  +            D + A+  S
Sbjct: 159  GRGWISVERLLHAGEEVWFE-RIRHAAETIGMPLVAAGDVHMHDRAHKPLQDTMTAIRLS 217

Query: 238  TVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              ++      +   + +L+ R E+  ++   PE L+ T+ IA RC+F L       P   
Sbjct: 218  QPLAACGYALQPNAEQHLRTRLELAQLYP--PELLQETLSIAARCTFSLDELRYEYP--- 272

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E     +   + LR     G+  R  +GA  K       R++++ EL +IA +K+  Y
Sbjct: 273  -DELTGTDETYTDYLRRMVENGMRWRFPKGASIK------VRKQIEHELKLIADLKYEPY 325

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D + +A+   I +  GRGS A S   Y L IT+IDP R +LLFERF++ +R   P
Sbjct: 326  FLTVFDIVSFARSQGI-LCQGRGSAANSAVCYCLGITEIDPERSNLLFERFISRERNEPP 384

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF   RR EVI+Y+  +YG +R A   T  + + ++A++DVG+AL +   ++ RL 
Sbjct: 385  DIDVDFEHQRRGEVIQYIYRRYGRDRAAIAATVITYRTRSAVQDVGKALGLDIERIRRLS 444

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLAD-------PSVDRLLEISQKLEGLYRHASTHA 529
              +           A  D S     RL +       P + +L+ ++  L G  RH S H 
Sbjct: 445  TSL-----------ARWDKSSDINKRLGENGFDPGSPVIRQLILLTTLLYGYPRHLSQHV 493

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G V+    L ++VP+      +  + Q++   + + GL+K D L L  L+ + ++LD +
Sbjct: 494  GGFVLTRDKLCRIVPIENAAMPNRRIIQWDKDDLAEVGLMKVDVLALGMLSAIHRALDLI 553

Query: 590  -AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             ++RGV   +  IP +D +TY ++    T+G+FQ+ES      L  ++P    D++  V+
Sbjct: 554  SSRRGVPFQMQDIPPEDEKTYDMICKADTIGVFQIESRAQMSMLPRLRPRTFYDLVVEVA 613

Query: 649  LYRPGPI--DNIVVYNNRKNGKEKIVSIHPL-IDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            + RPGPI  D +  Y  R+  KEK    +P  ++  L  T GV I+QEQVMQ+A L +G+
Sbjct: 614  IVRPGPIQGDMVHPYLRRRQDKEK--PDYPEGVETALARTYGVPIFQEQVMQVAMLAAGF 671

Query: 706  SLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            +  EAD LRR+M   K K  +    E+ I G +  G ++  A  IF  +  F +YGF +S
Sbjct: 672  TSGEADQLRRSMAAWKRKGGLGAFHEKLIDGMTNRGYTREFAERIFRQIEGFGEYGFPES 731

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV--- 821
            HAA++A++ Y +AW+K H P  FL A +           +  QDA +  +QI P  V   
Sbjct: 732  HAASFALLVYVSAWLKCHEPAAFLCALLNSLPMGFYSASQLIQDAGRHGVQIKPVDVTIS 791

Query: 822  NTPCV----DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            N  C+    + K     +   L  +KG+G   A  I+EA     F++ +D  +R     L
Sbjct: 792  NWECILEEQEDKALQPIVRLGLNRVKGMGLEAATRIVEAREIASFENPDDLANRA---SL 848

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN-------IFAHE 930
            N   + +L  A AL      R Q L S+      A  + +    +H         I A  
Sbjct: 849  NTAEVHALARADALRTLSGHRRQTLWSV------ASHITQRDLMRHAPAKETLPVIPAAP 902

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
            +G        E+   + +S R              HPL + +P L  M ++   E     
Sbjct: 903  EG--------EEIIADYASTRLT---------LRRHPLALLRPTLASMNLRSAMELSDYP 945

Query: 991  RGNNIRLAAMVVSKQQKKTRKG 1012
             G  +R   +V  +Q+  T  G
Sbjct: 946  TGRLVRTTGIVTCRQRPGTASG 967


>gi|312196206|ref|YP_004016267.1| DNA polymerase III subunit alpha [Frankia sp. EuI1c]
 gi|311227542|gb|ADP80397.1| DNA polymerase III, alpha subunit [Frankia sp. EuI1c]
          Length = 1213

 Score =  347 bits (889), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 260/861 (30%), Positives = 411/861 (47%), Gaps = 65/861 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS++S L+GA    +++++ A     A+A+TD + ++  + F++ A   G++ + G 
Sbjct: 68  LHCHSAFSFLDGASQPEDLVEEAARLGLSALALTDHDGMYGVVRFAEAAEQVGLRTLYGV 127

Query: 74  QLDIDMQDNLKMTN----------------------QGKTPFPTVPSIVLLVSTAEGYQR 111
           ++ +    +  +                        +   P P    +++L  T EGY+R
Sbjct: 128 EVSLAPGPDRPVPGPDTGEPRPGPRRPGPPGEAPAPRPGVPDPVGDHLLVLARTPEGYRR 187

Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEKR 170
           L   VS  +L    K      L  L     +G   +LTG   G +  A        A   
Sbjct: 188 LSRAVSDAHLAGGEKGRPLTSLDVLAAAAGDGHWQILTGCRKGLVPAALAAGGLDAARVA 247

Query: 171 LLTFKKLFG-DRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
           L      FG D + V L  H    D  R   +  LA    L  VATNN  + +       
Sbjct: 248 LDGLVGRFGRDNVAVELWDHAHPLDSDRNDALYGLAQEAGLTCVATNNVHYATPSAGRLA 307

Query: 229 DVLMAVAHSTVVSQKDR--PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            V+ ++     + + D   P     H L++ +EM   F+  P A+E    +    +F L+
Sbjct: 308 AVMASIRARRSLDEMDGHLPPAGAAH-LRSGAEMTDRFARYPGAVEAAARVGTESAFNLR 366

Query: 287 VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
           + AP LP F           E + LR   + G   R       +   A D   +L  EL 
Sbjct: 367 LVAPRLPDFPVPP----GHTEASWLRLLTMQGAARRYGPPVRERVGGAYD---QLAHELT 419

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
           +I  + F GYFLIV D +++ ++ +I +  GRGS A S   YAL IT +D + F LLFER
Sbjct: 420 LIESLGFPGYFLIVHDIVEFCRREDI-LCQGRGSAANSAVCYALGITGVDAVSFGLLFER 478

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           FL P+R   PD D+D    RR+EVI+YV  +YG +R AQ+    S ++++A+RDV RAL 
Sbjct: 479 FLAPERDGPPDIDLDIESGRREEVIQYVYGRYGRDRAAQVANVISYRSRSAVRDVARALG 538

Query: 467 MPYSQ-------VDRLCKLIPNDPAH-------------PVSLQAIADDSRFREARLADP 506
               Q       +DR   L    P               P   QA+    R   A   + 
Sbjct: 539 FSPGQQDAWSSGIDRWSPLPAAAPPAPPAAVPAVPAAVTPGPGQAVEPADRIGTAIPVE- 597

Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
               ++ ++ +L G  RH   H+ G+VI DRP++++VP+         V Q++      A
Sbjct: 598 ----VVGLAGQLLGFPRHLGIHSGGMVICDRPVAEVVPVEWARMPGRTVIQWDKDDCAVA 653

Query: 567 GLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
           GL+KFD LGL  L  L  +   +    G  +DL  IP +D   Y +L    ++G+FQ+ES
Sbjct: 654 GLVKFDLLGLGMLGALHLAFALIRDHHGRHLDLGEIPPEDPAVYDMLCAADSIGVFQVES 713

Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK 683
                 L  ++P    D++  V+L RPGPI    V  Y  R+N  E++   HPL++  LK
Sbjct: 714 RAQMATLPRLRPRRFYDLVVEVALIRPGPIQGGSVHPYIRRRNDLEEVTYPHPLLERSLK 773

Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGIS 742
           +T G+ ++QEQ+MQ+A  ++G++ +EAD LRRAMG K+  E +D+ +ERF  G + NGI+
Sbjct: 774 KTLGIPLFQEQLMQMAIDVAGFTAAEADQLRRAMGAKRATERIDRLRERFYQGMATNGIT 833

Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              A  ++  LA FA++GF +SH+ ++A + Y +AW+K +YP  F AA +  +       
Sbjct: 834 GAAADELYTKLAAFANFGFPESHSVSFAFLVYASAWIKLYYPAAFCAALLNAQPMGFYSP 893

Query: 803 KKFCQDARQFNIQIMPPSVNT 823
           +    DAR+  + +  P +N 
Sbjct: 894 QSLVADARRHGVTVHGPDLNA 914


>gi|289667318|ref|ZP_06488393.1| error-prone DNA polymerase [Xanthomonas campestris pv. musacearum
            NCPPB4381]
          Length = 1083

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 278/1039 (26%), Positives = 473/1039 (45%), Gaps = 93/1039 (8%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q  +  P++  L   S +S L GA S   +  +       A+AITD  +L   +   + 
Sbjct: 39   VQVADGLPAYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEA 98

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            +   G++ I+G +    + D  +               VLLV  A GY +L  L++    
Sbjct: 99   SRVTGVRLIVGSEFT--LVDGTR--------------FVLLVENAHGYPQLCALITTARR 142

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                K + R+  +   E+  +   +  G        A +   +Q   ++     ++ G+R
Sbjct: 143  A-ASKGAYRLGRA---EVEAQFRDVALGVF------ALWLPGAQPQAEQGAWLHQVLGER 192

Query: 182  LYVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ ++ HR  D     QV+Q LA    +  +A+ +       +    D L A+ H+  +
Sbjct: 193  AFLAVELHREQDDAARLQVLQVLAQQLGMTALASGDVHMAQRRERIVQDTLTAIRHTLPL 252

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +          + +L+ R  + +I+ D    L+  VE+A+RC+F L   +   P+ +  E
Sbjct: 253  ADCGAHLFRNGERHLRTRRALGNIYPD--ALLQAAVELAQRCTFDLSKISYTYPKELVPE 310

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                     + LR    AG+  R   G  AK       R+ ++ EL +IA  K+  +FL 
Sbjct: 311  ----GHTPTSYLRQLTEAGIRKRWPCGISAK------VREDIEKELALIALKKYEAFFLT 360

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++A++ NI +  GRGS A S   YAL IT ++P    LL  RFL+  R   PD D
Sbjct: 361  VQDVVRFAREQNI-LCQGRGSSANSAVCYALDITAVNPHETRLLMARFLSEKRDEPPDID 419

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EV++YV NKYG ER A   T    + K+A+RDV +A  +P  Q+  L    
Sbjct: 420  VDFEHERREEVLQYVYNKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCY 479

Query: 480  P-NDPAHPVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
               +   P+       + R  EA   LA+P ++++L +++ L    RH S H  G VI D
Sbjct: 480  GWGNGETPM-------EQRIEEAGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISD 532

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK 595
             PLS LVP+     +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG  
Sbjct: 533  EPLSLLVPVENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRD 592

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              ++ +P DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 593  YSIATLPGDDLPTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPI 652

Query: 656  --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              D +  Y  R+ G+E +    P ++ +LK T GV ++QEQVM++    + Y+ SEAD L
Sbjct: 653  QGDMVHPYLRRRQGREDVNYPSPEVEDILKPTLGVPLFQEQVMELLMHAADYTESEADNL 712

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RR+M   +   +M++ + R        G +      IFE +  F  YGF +SHAA++A +
Sbjct: 713  RRSMAAWRRGGDMEQHRARVRERMQGKGYASIFIDQIFEQIKGFGSYGFPQSHAASFAKL 772

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-----IQIMPPSVNTPCVD 827
             Y + W+K H P  F    +  +        +  QDAR+ +     ++++P  V     D
Sbjct: 773  VYASCWLKRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWD 832

Query: 828  FKVGDNRIYYS-------------LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
              +   R + S             +  + G+    A+ I+ A   + F  + D C R   
Sbjct: 833  NTLVGGRPWRSDDDPGEQPAIRLGMRQVAGLSEVVAQRIVAARRQRAFADIGDLCLRA-- 890

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
              L+ +   +L  AGA           LQ +   +  A+W       +   +     G+ 
Sbjct: 891  -ALDEKARLALAEAGA-----------LQGMVGNRNAARWAMAGVEARRPLL----PGSP 934

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++     F    +      + R +G     HP+ + +P +R+  I G  E      G+ 
Sbjct: 935  EERPV--AFEAPRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRSHGSG 992

Query: 995  IRLAAMVVSKQQKKTRKGS 1013
            + +A +V  +Q+  T KG+
Sbjct: 993  VHVAGLVTQRQRPATAKGT 1011


>gi|325663123|ref|ZP_08151573.1| hypothetical protein HMPREF0490_02314 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470577|gb|EGC73807.1| hypothetical protein HMPREF0490_02314 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 550

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 203/563 (36%), Positives = 326/563 (57%), Gaps = 22/563 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           + VH+ YSLL+G+  +   + ++      + AITD   +F  ++F + A AAGI PI+GC
Sbjct: 1   MHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMFGVIDFYRAAKAAGINPILGC 60

Query: 74  QLDIDMQDNLKM-TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
           ++ +          N G+  +     +VLL    +GYQ L+++VS+ ++ +      RI 
Sbjct: 61  EVYVAPGSRFDHEINGGEDRYY---HLVLLAENNQGYQNLMKIVSKGFV-EGYYYKPRID 116

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRHRG 191
           +  L+E   EG+I L+   +G + +       + A++  L ++ +FG    ++ LQ H  
Sbjct: 117 IELLEEY-HEGIIALSACLAGEVQKNLLRGMFEEAKQAALRYESIFGKGNFFLELQDHGL 175

Query: 192 YDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            ++   +Q +++LA    + LVATN+  +   ED + HD+L+ +     ++ ++R R   
Sbjct: 176 TEQADVNQRLIRLAAETGIELVATNDVHYTYAEDEKPHDILLCIQTGKKLTDENRMRYAG 235

Query: 251 -DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +Y+K+  EM+ +F    +ALENT +IA RC   ++     LP++ +        E  N
Sbjct: 236 GQYYVKSEQEMIELFPYARQALENTQKIADRCHVEIEFGVTKLPKY-DVPGGMTSWEYLN 294

Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
           +L      GLE R            ++ ++RL +EL+ I  M +  YFLIV DFI++A+ 
Sbjct: 295 QL---CFEGLERRYPN-------PGEELKERLSYELSTIKNMGYVDYFLIVWDFIKYARD 344

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
           N+I VGPGRGS AGS+ +Y L IT+IDP+R+ LLFERFLNP+R+SMPD DIDFC +RR E
Sbjct: 345 NDISVGPGRGSAAGSIVSYCLGITNIDPIRYQLLFERFLNPERVSMPDIDIDFCFERRQE 404

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
           VI YV  KYG +RV QI+TFG++ A+  +RDVGR + +PY+ VD + K+IP +    +  
Sbjct: 405 VIDYVVRKYGKDRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDAIAKMIPTELNITID- 463

Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
           +A+  +  FR+    D  V  L+++S++LEGL RH S HAAG+VI  + + + VP+ R  
Sbjct: 464 KALKMNPEFRKMYETDEQVKYLIDMSKRLEGLPRHTSMHAAGVVISQKSVDEYVPLSRAS 523

Query: 550 RSDLPVTQFNMKWIEKAGLIKFD 572
              +  TQF M  +E+ GL+K D
Sbjct: 524 DGSI-TTQFTMTTLEELGLLKMD 545


>gi|315499387|ref|YP_004088190.1| DNA polymerase iii, alpha subunit [Asticcacaulis excentricus CB 48]
 gi|315417399|gb|ADU14039.1| DNA polymerase III, alpha subunit [Asticcacaulis excentricus CB 48]
          Length = 1075

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 283/1031 (27%), Positives = 470/1031 (45%), Gaps = 94/1031 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +V LQ  S +S L+G  S + +  +  A    A+AI D N L   +     A A G++
Sbjct: 3    PPYVELQCASYFSFLQGCSSPDELFVRAQALGLEALAIADRNTLAGMVRAHVAAKATGVR 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+GC LD+    +L +    +T +  + S +L V  A G                GK  
Sbjct: 63   LIVGCHLDLTDGASLLVYPTDRTAYARL-SRLLTVGKARG----------------GKG- 104

Query: 129  VRICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFF--NSSQVAEKRLLTFKKLFGDRLYVN 185
             R  L+W   E    GLI              F    + +V  +RL  FK +F +R ++ 
Sbjct: 105  -RCDLTWQDVEDFNAGLI------------GIFIPEEADEVCAQRLRRFKTIFAERAHMA 151

Query: 186  LQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQK 243
            L  R R  D  R   +  LA    +P V TN+ L+   E  + HDV+  + H+ T+ +  
Sbjct: 152  LTLRRRQGDHLRLHDLSNLAARVRVPTVITNDVLYHVHERDQLHDVVTCIRHNCTIDTMG 211

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            D      D YLK   EM  +F     AL  + EIA +C F L               D++
Sbjct: 212  DLRHCYADRYLKTPEEMYRLFPGYEGALRRSAEIAEQCRFSL---------------DEL 256

Query: 304  --QKEEENELRN-KAVAGLEVRLAQGAIAKGYHAQDYRQR----LDFELNVIARMKFSGY 356
              Q  EE  L    A+  L+    +GA  K  + +   Q+    L  EL +I ++ ++ Y
Sbjct: 257  KYQYPEEKLLPGLSAIDALKKLTWEGA--KRRYPEGVPQKVIDLLRHELTLIEKLNYAPY 314

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V   + +A+  +I +  GRGS A S   + L IT +DP R  LLFERF++ +R   P
Sbjct: 315  FLTVNAIVNFARSQDI-LCQGRGSAANSCVCFVLGITSVDPDRNDLLFERFISEERGEPP 373

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF   RR+EV+++V   YG    A        + + A+R V + +  P   +    
Sbjct: 374  DIDVDFEHQRREEVLQWVYETYGRSHAALTAVVTRFRTRGAIRAVLKVMGYPEDTI---- 429

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLI     H         ++      L D  +   +++   L  + RH S H  G V+  
Sbjct: 430  KLISKQVTHWHRGGMTLAEAEGLGLNLNDRRLKLAIDLHLLLMNVPRHLSQHPGGFVLTH 489

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595
              L +LVP+         V +++   I+    +K D LGL  ++ +++SLD LA+ +G++
Sbjct: 490  DRLDELVPIEPARMKARQVIEWDKDDIDVLAFMKVDCLGLGMMSCMKRSLDLLAEVKGIE 549

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +DL+ IP +D  TY ++    T+G+FQ+ES   +  L   +P    D++  V++ RPGPI
Sbjct: 550  LDLATIPAEDPRTYAMIRKADTVGVFQIESRAQQAMLPRTKPRTFYDLVVQVAIVRPGPI 609

Query: 656  DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               +V  Y  R+ G E++      ++ +L +T GV ++QEQ M +    +G+S   AD++
Sbjct: 610  QGGMVHPYLRRREGTEEVTYPSKELEAILSKTLGVPLFQEQAMSVVIKAAGFSPGRADMV 669

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM   K    + K  +  + G  KNG ++  A  IF  L  F  YGF +SHA ++A+I
Sbjct: 670  RRAMATFKHTGGVSKFHDEIVQGMLKNGYTQDYAEQIFSQLEGFGSYGFPESHAYSFALI 729

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-- 830
            +Y ++WMK H+P  F AA +  +        +  ++A++  +++ P  VN    D  +  
Sbjct: 730  AYASSWMKCHHPDVFCAALLNSQPMGFYAPAQLVRNAQEHGVEVRPVCVNASHWDCTLEE 789

Query: 831  ----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN-RRVLESL 885
                G   +      +KG+ +     ++    D PF S+ D   R  +     R++ ++ 
Sbjct: 790  TNRPGRYAVRLGFRLVKGLKSADIAKLILHRGDYPFTSISDLWKRARTPVATLRQLAKAD 849

Query: 886  VFAGALDCFGYSRMQLLQSL----DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
             F+ AL   G +R   L ++    D+       +E      HE            +++L+
Sbjct: 850  AFSPAL---GLNRRDALFAIRALRDDPLPLFDHLEAIAGGTHE--------MPEPQVSLK 898

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
              +     V   N    LG     HP+   +  LR+ G+    +++A+  G N+ +A MV
Sbjct: 899  PMTAGAVVVEDYNH---LGLTLGTHPVSFLREELRQRGLMPCADAMASKDGRNVSVAGMV 955

Query: 1002 VSKQQKKTRKG 1012
            + +Q+  +  G
Sbjct: 956  LVRQKPGSANG 966


>gi|241518341|ref|YP_002978969.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM1325]
 gi|240862754|gb|ACS60418.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM1325]
          Length = 1099

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 281/1025 (27%), Positives = 473/1025 (46%), Gaps = 85/1025 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV + +S L GA S + +          A+ + D N+L   +   + + A G++ +
Sbjct: 3    YAELQVTTHFSFLRGASSADELFSTARELAIEALGVVDRNSLAGVVRALEASRATGVRLV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+LD  +Q+ +              SI+L  +    Y RL    +R+  L +G+    
Sbjct: 63   VGCRLD--LQEGM--------------SILLYPTDRGAYSRL----TRLLTLGKGRGGKA 102

Query: 131  ICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             C+  L ++   +EGL+ +               + +    +L    ++F DR YV+L  
Sbjct: 103  NCILNLDDVALYSEGLLAILVPDL----------ADETCAVQLRKMAEIFEDRAYVSLCL 152

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R R  D+ R  ++  +A  H +  V TN+ LF      +  DV+  + ++T +      R
Sbjct: 153  RRRPNDQLRLHELSNMAMRHRVRTVVTNDVLFHDPSRRQLQDVVTCIRNNTTIDDVGFKR 212

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                D YLK   EM  +F   PEAL  T+EI  RC F L+      P    +E     K 
Sbjct: 213  ERHADRYLKPPEEMERLFPRYPEALARTMEIVDRCRFSLEELTYQYP----EEAILPDKT 268

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L +     +  R  +G         +  + +  EL++I  MK++ YFL V   +++
Sbjct: 269  PQESLEHYVWECVPNRYPEGL------PPEVLKIVRHELDLIRTMKYAPYFLTVFSIVRF 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +R
Sbjct: 323  ARSQGI-LCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHER 381

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+++   YG ++ A   T    +AK A+RDVG+AL +P   +  L   +       
Sbjct: 382  REEVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLPEDLIKALSTGMWAWSEEL 441

Query: 487  VSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            VS +++ D          +P   RL   L ++Q+L G  RH   H  G V+    L  LV
Sbjct: 442  VSDRSLRDQG-------LNPQDRRLALTLRLAQQLMGAPRHLGQHPGGFVLTHDRLDDLV 494

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+      D  V +++   +E    +K D L L  LT + K+   + + +   +DL+ IP
Sbjct: 495  PIEPAAMVDRQVIEWDKDDVEALKFMKVDILALGMLTCMAKAFALIEEHKDEHLDLATIP 554

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D +  
Sbjct: 555  QEDQATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVIQVAIVRPGPIQGDMVHP 614

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+ GKE++V   P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M   
Sbjct: 615  YLRRREGKERVVYPTPELEAVLGKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATF 674

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    + + K++ +SG  +NG +   A   F  L  F  YGF +SHAA++A+I+Y + ++
Sbjct: 675  KFTGGVSRFKDKLVSGMIRNGYTAEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYV 734

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVDFKVGD---N 833
            K H P  F AA +  +        +    AR   ++I P  +N     C   ++GD   +
Sbjct: 735  KCHCPDVFCAALLNSQPMGFYAAAQIVGCARNHGVEIRPICINNSRWDCTLERIGDTDHH 794

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +   +  ++G+    A  +  A  D+PF+S++D   R            SLV     D 
Sbjct: 795  AVRLGMRMVRGLAAADAARVAAARMDQPFESVDDMWRRSGVPA------ASLVELAEADA 848

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            F       L SL   ++ A W  K   ++   +FA      +  I  E+   E +  +  
Sbjct: 849  F-------LPSLGLQRRDALWAIKALRDEPLPLFAAASEREARAIA-EQQEPEVALRQMT 900

Query: 954  NEQRV------LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +   V      +G     HP+   +  L +  I    +++    G  +  A +V+ +Q+ 
Sbjct: 901  DGHNVVQDYSHIGLTLRQHPVAFLRKALAERQIVTCAQAMNARDGRWLMTAGLVLVRQRP 960

Query: 1008 KTRKG 1012
             + KG
Sbjct: 961  GSAKG 965


>gi|256422395|ref|YP_003123048.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
 gi|256037303|gb|ACU60847.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
          Length = 1055

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 272/1024 (26%), Positives = 465/1024 (45%), Gaps = 87/1024 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V LQV S++S L GA   + ++++ A      IAITD N L   +     A A GI+ I
Sbjct: 3    YVELQVTSNFSFLRGASHPDELVEQAAEYGYKEIAITDRNTLAGIVRAHAAAKAKGIRII 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
              C+LD  +QD               PS++   +    Y RL  L++   L  +      
Sbjct: 63   PACRLD--LQDG--------------PSLLAYPTDQAAYSRLSSLLTTGNLRAEKGD--- 103

Query: 131  ICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             CL + +++     G+I +      P      F+     +  L  +K   G +LY+++ R
Sbjct: 104  -CLLYKKDVYAYAAGMIFIV---VPPEQLNTKFDFETAFKNDLKEYKDKLGSQLYLSVTR 159

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRP 246
             + G D  R  ++ QL+  + +PL ATN+  +   E  +  D+L  V    T+ +   R 
Sbjct: 160  SYLGDDHKRLYRLAQLSALYHIPLAATNDVHYHHPERRQLQDILTCVREKCTIYNAGFRL 219

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK  +EM  +F   PE + N   IA  C F L+    + P  +  E     + 
Sbjct: 220  HQNAERHLKTPAEMQRLFRQYPETISNARHIADACRFTLESLKYVYPEELTTE----GRT 275

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + EL   +  G + R       K   A      + +EL  I  M ++ YFL V D +++
Sbjct: 276  PQEELTYLSWEGAKERFGDDIPEKISSA------ISYELTFIEEMNYAAYFLTVHDIVRF 329

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A S   Y L IT ++P +  LLFERF++  R   PD D+DF  +R
Sbjct: 330  ARSQHI-LCQGRGSAANSTVCYVLGITSVNPTKIDLLFERFISSARNEPPDIDVDFEHER 388

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV NKYG +R A + T      K A+RDVG+A+ +    ++R+   I       
Sbjct: 389  REEVMQYVFNKYGRDRAAIVATVTQQHQKGAIRDVGKAMGLSVDTINRMSTSIWR----- 443

Query: 487  VSLQAIADDSRFREARL-------ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                    D  F E RL        DP + ++L +++++ G  R    H  G VI    L
Sbjct: 444  ------YTDEWFDEGRLLEHGLNPEDPHLKKVLALTKQMMGFPRQLGQHTGGFVITQGKL 497

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
             +L P+      +    ++N   I+  G +K D L L  LT ++K+ D   Q  G    L
Sbjct: 498  HELCPILNARMENRTCIEWNKDDIDTLGFMKIDVLALGMLTCIRKAFDLAKQHYGKDYTL 557

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
            + IP DD   Y +++   T+G+FQ+ES   +  L  ++P    D++  V++ RPGPI  D
Sbjct: 558  ANIPEDDPAVYEMISHADTIGVFQIESRAQQSMLPRLRPQRFYDLVIEVAIVRPGPIQGD 617

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+NG+E      P ++ +LK+T GV ++QEQ M IA   + ++ +EAD LRR+
Sbjct: 618  MVHPYLRRRNGQEA-PDYPPQLEDILKKTLGVPLFQEQAMNIAIKAASFTPTEADELRRS 676

Query: 717  MGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M   ++   ++K +++ I G + NG     A  IF+ L  F  YGF +SHAA++A++ Y 
Sbjct: 677  MATFRLNGVIEKFEKKLIDGMTANGYELDFAQRIFKQLKGFGSYGFPESHAASFALLVYV 736

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            ++++K +YP  F  A +        +  +   DAR  ++++ P  +N    D  + +   
Sbjct: 737  SSYLKCYYPDVFACALLNSMPMGFYQPAQIVSDARAHHVEVRPVDINHSSWDNTLEEKET 796

Query: 835  ----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                +      +KG+       ++ A        L      +    +++  LE L  A A
Sbjct: 797  IPHALRLGFRQVKGLNQEEMDVLLSARKKGITSILA-----LREAGVSQTALEKLADADA 851

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KGTFSDKITLEKFSVENS 948
                G  R + L           W   +  ++   +F  +  + T    + L + S    
Sbjct: 852  FRSIGLDRRRAL-----------WEISSLHDRPIGLFTGQASESTVEQPVDLPEMSAPEH 900

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             V+  N    +      HP+   +  L  + +   ++      G  +++A +++ +Q+  
Sbjct: 901  VVQDYN---AMALSLKAHPVSFVREKLSLLHVTSVKDLATIPDGMPVKVAGLILVRQRPG 957

Query: 1009 TRKG 1012
            T  G
Sbjct: 958  TASG 961


>gi|53803568|ref|YP_114587.1| DNA polymerase III subunit alpha [Methylococcus capsulatus str. Bath]
 gi|71151827|sp|Q605W1|DNAE2_METCA RecName: Full=Error-prone DNA polymerase
 gi|53757329|gb|AAU91620.1| putative DNA polymerase III, alpha subunit [Methylococcus capsulatus
            str. Bath]
          Length = 1047

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 291/1048 (27%), Positives = 477/1048 (45%), Gaps = 126/1048 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S++S L GA     ++ + A     A+A+TD  +L   +    +A   G + I
Sbjct: 9    FAELHALSNFSFLRGASHPKELVAEAARLGYAALALTDECSLAGVVRAHAEAKTLGFKLI 68

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA--EGYQRLIELVSRMYLLDQGKQS 128
            IG +  ++    L +    +  +  + + + L   A  +G  RL+      + LDQ    
Sbjct: 69   IGSEFRLEDGPKLVLLAMDRRGYGQLAAFITLGRRAAEKGEYRLLRGQLETHPLDQ---- 124

Query: 129  VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               C++ WL E               P D    + +      RL   +   G  L+++  
Sbjct: 125  ---CIAIWLPE-------------DAPDDETGAWLA------RLFPARCWIGVELFLS-- 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
               G D  R S +  L     LPLVA N+    + E     D L A+     +++     
Sbjct: 161  ---GGDGLRLSVLQALGERLGLPLVACNDVHMHARERQPLQDTLTAIRLGRPLAELGYAL 217

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                + +L+    +  I+   P A LE ++ IA RC F L               D+++ 
Sbjct: 218  FPNGERHLRPIEFLARIY---PRALLEESLRIAERCRFSL---------------DELRY 259

Query: 306  EEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            E   E           LR     G+  R  +GA  K       R++++ EL +I  M + 
Sbjct: 260  EYPAELVPDGYTAIAWLRELTRQGMAERWPEGAPDK------VRRQVEHELELIGAMAYE 313

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             +FL V D +++A+   I +  GRGS A S   Y L IT++DP R  LLFERF++ +R  
Sbjct: 314  PFFLTVHDVVRFARSRGI-LCQGRGSAANSAVCYCLGITEVDPARLDLLFERFISRERNE 372

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF  +RR+EVI+Y+  KYG  R A   +  + + ++A+RDV RAL    S++D 
Sbjct: 373  PPDIDVDFEHERREEVIQYIYRKYGRHRAALAASLITYRVRSAVRDVARALGFSPSRIDT 432

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGI 532
            L +++     H V   A     R  EA LA  +P+V RLL + Q L G  RH S H  G 
Sbjct: 433  LARVLDR---HGV---AETLPERLAEAGLASENPAVRRLLALMQMLVGFPRHLSQHVGGF 486

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
            VI    LS  VP+      +  V Q++   +E  GL+K D L L  LT ++K+L ++ + 
Sbjct: 487  VIAAEDLSHWVPVENAAMPERTVIQWDKDDLESLGLLKVDVLSLGMLTAIRKALAYVGEG 546

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            RG    L+ +P +D   Y +L    ++G+FQ+ES      L  ++P    D++  +++ R
Sbjct: 547  RGRPFTLADVPPEDPAVYEMLQRADSIGVFQVESRAQMSMLPRLRPQSYYDLVIQIAIVR 606

Query: 652  PGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGPI  D +  Y  R+ G E +    P ++ +LK T GV I+QEQVMQ+A + +G++  E
Sbjct: 607  PGPIQGDMVHPYLTRRAGLEPVSYPSPAVEKVLKRTLGVPIFQEQVMQLAMVAAGFTPGE 666

Query: 710  ADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD LRRAM     K  ++  +++ + G  + G  +  A  I+  +  F +YGF +SH+A+
Sbjct: 667  ADRLRRAMAAWHRKGGLEPFEKKLMDGMRERGYEERFARQIYRQIRGFGEYGFPESHSAS 726

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD- 827
            +A+++Y +AW+K H+P  F  A +  +        +  QDAR+  +++ P  VN    D 
Sbjct: 727  FALLAYVSAWLKCHHPAAFACALLNSQPMGFYGPSQLIQDARRHGVEVRPIDVNHSDWDC 786

Query: 828  ---------------------FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
                                  + G N  +   L  + G  +  A+ + +A    PF S+
Sbjct: 787  TLEPTEIPNPLSLWERVGVRALQTGSNPALRLGLRLVNGFSSAAAQRLSDARRQGPFQSI 846

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
            +D  +RV    L+RR LE+L  A AL   G  R +       ++       + +  + E 
Sbjct: 847  QDLATRV---PLDRRELEALAAADALHGLGGHRHRAFWEAAGVEAPTPLYAEPQFAEAEP 903

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            +   + G   D I    ++   +S+R              HPL + +  L + G +  E 
Sbjct: 904  LL-RKPGEAEDVIA--DYAAAGASLRR-------------HPLSLLRERLDRRGFRTAEA 947

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
                  G   R+A +VV +Q+  T  G+
Sbjct: 948  LWQVRNGAIARVAGLVVCRQRPMTANGT 975


>gi|330891559|gb|EGH24220.1| error-prone DNA polymerase [Pseudomonas syringae pv. mori str.
            301020]
          Length = 1031

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 284/1040 (27%), Positives = 468/1040 (45%), Gaps = 113/1040 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + ++ +     A+AITD   L   +   Q + + G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASISTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-----------RM 119
            IG ++ I+                  P  VLLV +  GY+ L +L++           R+
Sbjct: 65   IGSEMHIE----------------NGPKAVLLVESQTGYEALCKLITVARRRARKGEYRL 108

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
               D    S  +   WL +I  +    L  G                        ++ F 
Sbjct: 109  LREDFEPSSDGLLAIWLPDIEGDAQACLAHGR---------------------WLRERFA 147

Query: 180  DRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +RL++ ++ HRG D   R + ++ LA +  +P VA+ +    +       D + A+ H T
Sbjct: 148  ERLWLGVELHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHT 207

Query: 239  VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V++         + +L+    +   + D    L  +V IARRC+F L+      P    
Sbjct: 208  TVAEAGHLLFANGERHLRPLDALAEHYPDW--LLAESVRIARRCTFDLKQLKYEYP---- 261

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E     +   + LR     G   R   G           R +++ EL +I   KF  YF
Sbjct: 262  HELVPKGQTPTSWLRELTERGARKRWPNGLTPA------TRAQVEKELALITEKKFDSYF 315

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D +++A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD
Sbjct: 316  LTVHDIVEFARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERNEPPD 374

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF   RR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L  
Sbjct: 375  IDVDFEHARREEVIQYIFRRYGRGRAALTAVASTYHGSGAVRDVAKVLGLPPDQINALAD 434

Query: 478  LIPNDPAHPVSLQAIADDSRFREARL-AD-PSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                  A      ++    R RE    AD P + R+L ++ +L G  RH S H  G VI 
Sbjct: 435  ------AFSRWSDSLPSPERLREYGFDADMPILKRVLALTGELIGFPRHLSQHPGGFVIS 488

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594
            + PL  LVP+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG 
Sbjct: 489  EHPLETLVPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGK 548

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +  L+ +P DD +TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGP
Sbjct: 549  RWTLADLPGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGP 608

Query: 655  IDNIVVYNN-RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            I   +V+   R+  KE+ ++  P +  + + T GV ++QEQVM++A + +GY+  EAD L
Sbjct: 609  IQGDMVHPYLRRRNKEEAITYPPKLKSVFERTLGVPLFQEQVMEVAIIAAGYTPGEADEL 668

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM   K    ++  +ER  +G   N      A  IFE +  F  YGF +SHAA++A++
Sbjct: 669  RRAMAAWKRHGGLEPHRERLRTGMLNNDYDVDFADRIFEQIKGFGSYGFPESHAASFALL 728

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG- 831
            +Y + W+K H P  F  A +           +  QDAR+ +I+I P  V     D  +  
Sbjct: 729  TYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEP 788

Query: 832  --------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                    +  I   L  ++G     AR I  A + + F    D   R     L+ R  E
Sbjct: 789  LDHPDSTRNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLTLRA---GLDARAAE 845

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            +L  +GA           L+ L   +  A+W E         +F ++  +   ++TL   
Sbjct: 846  ALADSGA-----------LRGLIGHRHRARW-EVAGVEAQRPLF-NDLPSEDTQVTLPLP 892

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR---LAAM 1000
             V         +   LG     HPL + +   R++  K +  S   +   N R   +A +
Sbjct: 893  RVAED---LMADYATLGTTLGPHPLALLR---RQLAAKRFRSSQDLLSLENDRTLSVAGL 946

Query: 1001 VVSKQQKKTRKGSRIGWVTF 1020
            V+ +Q+  T  G     VTF
Sbjct: 947  VIGRQRPGTASG-----VTF 961


>gi|152980588|ref|YP_001353603.1| DNA polymerase III alpha subunit [Janthinobacterium sp. Marseille]
 gi|151280665|gb|ABR89075.1| DNA polymerase III alpha subunit [Janthinobacterium sp. Marseille]
          Length = 1041

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 251/885 (28%), Positives = 425/885 (48%), Gaps = 64/885 (7%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           PS+  L   S++S L GA     ++++       ++AITD  +L   +    +A    + 
Sbjct: 6   PSYAELHCRSNFSFLHGASHPEELVERACDLGYSSLAITDECSLAGVVRAHVEAKKRQLH 65

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM--------Y 120
            IIG ++ +     L                + L     GY  L EL++          Y
Sbjct: 66  LIIGSEIKLACGSKL----------------LFLACNRNGYGNLSELITLARRRAAKGSY 109

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L +        ++ L+ +     I+L       ++ A      Q A       ++ F  
Sbjct: 110 TLYRSDLDAHAAIAHLRHLPDCLTILLPQRGCSAVELA-----GQAA-----WLQQNFAG 159

Query: 181 RLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           R ++ ++  H   D +  +Q+ ++A    LPLVA  + L          D L AV     
Sbjct: 160 RAWIAVELLHWSGDEHWLAQLKEIAAQQALPLVAMGDVLMHVRSRKPLQDTLTAVRLGKS 219

Query: 240 VSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIE 297
           +++     +   + +L++R  +  I+   P AL + ++EIA  C+F L+      P  I 
Sbjct: 220 IAECGLDLQPNAEQHLRSRLRLSQIY---PAALLKESLEIAALCTFSLEELRYQYPEEIV 276

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
              + +       LR     G   R  +  I + +H      R++ EL++I  + +  YF
Sbjct: 277 PAGETMSAY----LRRLVYEGATQRRYKNGIPEEFHV-----RIEHELSLIQELHYEPYF 327

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           L V D +++A+   I +  GRGS A S+  Y L IT++DP R S+LFERF++ +R   PD
Sbjct: 328 LTVYDIVKFARSEGI-LCQGRGSAANSIVCYCLGITEVDPARSSVLFERFISRERNEPPD 386

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D+DF   RR+EV++Y+  KYG  R A      + + ++A++DVG+AL + + Q++RL +
Sbjct: 387 IDVDFEHQRREEVMQYIYQKYGRHRAALTAALITYRPRSAMKDVGKALGLDFEQINRLSQ 446

Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                    +    + ++    E+    P V +L+E++Q L G  RH S H  G VI   
Sbjct: 447 SHKWWDGKQIGADRLQENGFDPES----PIVQKLVELTQTLIGFPRHLSQHTGGFVISQD 502

Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKV 596
            L++LVP+      D  V +++   ++  GL+K D L L  L+ ++++L+ ++ +RG   
Sbjct: 503 SLARLVPIENASMKDRSVIEWDKDDLDALGLLKVDVLALGMLSAIRRALEMISLRRGHDF 562

Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
           +L  I  DD  TY ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI 
Sbjct: 563 ELQDIHDDDAATYEMICAADTIGVFQIESRAQMSMLPRLRPKCYYDLVIQVAIVRPGPIQ 622

Query: 657 NIVVY---NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             +V+    NR+  K+ I+     I+  L  T GV I+QEQVMQIA L +GY+  EAD L
Sbjct: 623 GGMVHPYLKNRRMNKDDIIYPGDEIEEALSRTCGVPIFQEQVMQIAVLAAGYTAGEADDL 682

Query: 714 RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           RR+M   K K  ++K + +  +G   NG     A  +FE +  F +YGF +SHAA++A++
Sbjct: 683 RRSMAAWKRKGNLEKHEIKLKTGLINNGYDPGFADRLFEQIKGFGEYGFPESHAASFALL 742

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            Y +AW+K H P  FLAA +  +        +  QDA++  + + P  +     +  + D
Sbjct: 743 VYVSAWIKRHEPAAFLAALLNSQPMGFYSASQLVQDAKRHGVPVRPVDIMLSETESTMED 802

Query: 833 NRIYY-----SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
               Y      L  +KG+ T  A  I++A   +PF S +D   R 
Sbjct: 803 MHAQYPAVRLGLHMVKGLSTDAAERIIDARLRRPFASTDDLARRA 847


>gi|308523775|gb|ADO33730.1| putative error-prone DNA polymerase [Deinococcus ficus]
          Length = 1069

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 297/1048 (28%), Positives = 490/1048 (46%), Gaps = 111/1048 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V +   S +S     +S   ++ + AA    A+ + D  +L  A+E    A   GI  ++
Sbjct: 17   VLIGCQSYFSEGRSTVSPRRLVQRAAAAGFTAVGLADWCSLAGAVELHDVASELGISAVV 76

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  L +           G+ P  T P ++LL ++ EGY+ L ELV+ + L    + +  +
Sbjct: 77   GVTLPV------IFPAVGRQPSETFP-MILLATSREGYETLCELVTLINL----QHNAGL 125

Query: 132  CLSWLQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              + ++E+ G E L+ LTGG  G            +A + L   K +F   LYV L    
Sbjct: 126  PWAVIEELRGQEHLVCLTGGRGGFPTLLGERKELALAARHLTALKGIFPMGLYVQLYHGE 185

Query: 191  GYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--QKDRPR 247
              +  R  + ++ LA   ELP+VA         EDY   D L        V     +RPR
Sbjct: 186  APNERRRLEYLRGLARDLELPVVAAPEIRMADREDYPLLDALTCARLGIDVQTPHPERPR 245

Query: 248  ------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAP--ILPRFI 296
                   TP+H+ +            P+   N   IA+ C + L   ++H+P   LP  +
Sbjct: 246  NDALSIETPEHWGQ--------LLPFPDGTLNAARIAQVCRWDLLPERLHSPEPTLPPGM 297

Query: 297  EKECDDIQKEEE------NELRNKAVAGL---EVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              +    ++         NE   +A+ G    +V L+Q             +RL  EL  
Sbjct: 298  TPQAALEERALAAAAEKYNECVTEALKGSREGDVSLSQAT-----------ERLQSELAT 346

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            +A +  +G+FL  A+   + K + I +  GRGS AGSV  Y L IT  DPL+ +LLFERF
Sbjct: 347  VAELDMAGFFLTAAEVADYCKAHGI-LAAGRGSAAGSVLCYVLGITLTDPLKHNLLFERF 405

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY-----GHERVAQIITFGSLQAKAALRDVG 462
            L+  R SMPD D D    RRD+V+R+V+ ++     G   VA  IT+   +  +A++D+G
Sbjct: 406  LHTGRTSMPDVDFDIASSRRDQVLRWVEERWGMTGAGEAMVANRITY---RLPSAVQDLG 462

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            RAL +P    DRL + +  D  H    +    DS F E     P  + LL++ +++E  +
Sbjct: 463  RALGLPPELRDRLSRALGRDFRHHRPHRVREADSIFCEVLGDAPIKEALLKLLERVEARF 522

Query: 523  -RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             RH + H+ G+V+    L++  P+ R     + +  F+   +E+ GLIK D LGL+ L  
Sbjct: 523  TRHLAPHSGGVVLSSASLTRYSPLMRS-SGGIRMLTFDKDDVERLGLIKLDLLGLRMLAA 581

Query: 582  LQKSLDFLAQRGVKVDLSLIPF----DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            L+++ + +    +++    +P+    DD   +  +++  T+G+FQ+ES    Q    +QP
Sbjct: 582  LERAREEV----LRLTGQWMPYGDLPDDPRVWAEISSGDTMGLFQIESPAQVQMTARLQP 637

Query: 638  DCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
              +E +   ++L RPGPI +  V  Y  R  G+E +      I  +L+ T G +++QEQ+
Sbjct: 638  KTMEQLAHQIALVRPGPIQSGTVHPYVRRARGEEPVPEQMEPIRSILRATHGTLMFQEQI 697

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKN-GISKTIAVNIFELL 753
            ++IA   +GY    AD  R  + K   E E+ + K  F+ GA++  G     A  IF + 
Sbjct: 698  LRIAVQFAGYDWPRADRFRSRLSKVEDEAELQQLKAEFVLGAAQTVGAFPEEAEEIFGMC 757

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
            A F  YGF +SHA A+A  SY +A+M+ ++P  F A  +T E   +       Q+ R+  
Sbjct: 758  AAFRGYGFAESHAHAFAQHSYASAYMRHYHPAAFFAGVLT-EAPGMWPAGTIAQECRRRK 816

Query: 814  IQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSR 871
            +Q+ P  +N   + ++  + R I  SL  + G+    AR I+ E      F S+EDF  R
Sbjct: 817  VQLAPVDINRSGLAWRAENLRSIRASLVTVDGISEDAARMIVQERLVGGKFRSVEDFYDR 876

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQ-----LLQSLDNIQKYAQWVEKNRTNKHENI 926
            VD   L +  LE+LV AGA D     + +     +L ++ N +K                
Sbjct: 877  VD---LPKDRLETLVKAGAFDRIDAQKNRREAYYVLHTVANTRKPGT------------- 920

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG-HPLDVYKPILRKMGIKGYEE 985
                +G       + + S  +   +   +    G   SG H LD ++  LR +G     +
Sbjct: 921  ----RGLLHVSTDVPELSEMSEPEQLNLDLETKGLSESGAHLLDAHRARLRDLGC----Q 972

Query: 986  SVATIR-GNNIRLAAMVVSKQQKKTRKG 1012
            ++A +R G  +  A ++V++Q+  T KG
Sbjct: 973  ALAGLRHGETVWAAGVIVARQRPPTAKG 1000


>gi|172040092|ref|YP_001799806.1| error-prone DNA polymerase [Corynebacterium urealyticum DSM 7109]
 gi|171851396|emb|CAQ04372.1| DNA polymerase III, alpha subunit [Corynebacterium urealyticum DSM
           7109]
          Length = 1157

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 252/833 (30%), Positives = 397/833 (47%), Gaps = 84/833 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQ 68
           F  L+  SSY  L GA     ++++  A    A+A  D + ++ A  F+  A  A   ++
Sbjct: 88  FAELRAASSYHFLHGASEPEELVEQAIALGITALACLDRDGMYGAARFATAAAEAEGELK 147

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            + G +L ID               P  P + +L    EGY+RL   ++   +  + K +
Sbjct: 148 TVFGAELSIDG--------------PQAPGLAVLCRGQEGYRRLSRSITAARMAHRDKDA 193

Query: 129 VRI-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNL 186
           V       L E      ++L       ID A      + AE       + FG +   V L
Sbjct: 194 VEYPSFGELAEAAGGHWLVL-------IDAAQLSIPGRAAE-----LLEAFGTQHCLVQL 241

Query: 187 QRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           Q          ++ +   A TH L  + ++     +          +A A + +  + D 
Sbjct: 242 QLSMDPADVDHNEALHAFATTHGLREILSSQPTCATPSQAR-----LAGAKAALRRRWDV 296

Query: 246 PRVTP------DHYLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQVHAPILPRF- 295
            R  P        +L++ +E+  +  D   L EA   +V++A  C+F L + AP LP F 
Sbjct: 297 ARAEPVTHPMGGSWLRSGAELRQLAGDCAWLAEATATSVDVAEECAFTLNLVAPELPHFP 356

Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
           + +   ++    E   RN    G      +G+ A    AQ   + +D EL VI ++ F G
Sbjct: 357 VPEGHSEMSWLRELVERN----GTHRYGWRGSTAA---AQKAWEVIDRELGVIEKLGFPG 409

Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
           YFLIV D +     NNI +  GRGS A S   +AL IT +D +   LLFERFL+P+R   
Sbjct: 410 YFLIVHDIVDHCHSNNI-LCQGRGSAANSAVCFALGITSVDAVAAGLLFERFLSPEREGP 468

Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
           PD D+D    RR+EVI+YV  +YG +  AQ+    + + K ALRD  RAL  P  QVD  
Sbjct: 469 PDIDLDIESGRREEVIQYVYRRYGRDNAAQVANVITYRRKGALRDAARALGYPAGQVDAW 528

Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            +     P                         +R+ +++++L G  RH   H+ G+VI 
Sbjct: 529 TRGAAEAP-------------------------ERVRQLAEQLIGQARHLGIHSGGMVIC 563

Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594
           DRP++ +VP       +  V Q++       GL+KFD LGL  L  L  ++D +A  RG 
Sbjct: 564 DRPIADVVPTEWARMENRSVVQWDKDDCAAVGLVKFDLLGLGMLEALHHAIDQVATHRGR 623

Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
           +++L  +   +   Y +L+    +G+FQ+ES      L  ++P    D++  V+L RPGP
Sbjct: 624 RIELWRLAPTEEAVYEMLSRADAVGVFQVESRAQMNTLPRLRPRRFYDLVVQVALIRPGP 683

Query: 655 IDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           I    V+    R+NG E +   HP ++P L +T G+ ++QEQ+MQ+    +G++ +EAD 
Sbjct: 684 IQGGSVHPFIRRRNGLEPVTFDHPCLEPALSKTLGIPLFQEQLMQVVVDAAGFTAAEADT 743

Query: 713 LRRAMG-KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
           LRRAMG K+  E M + KERF  G  + NGI+  +A  ++E +  FA YGF +SH+ ++A
Sbjct: 744 LRRAMGSKRSPERMARLKERFYEGLERTNGITGEVADRLWEKITAFAAYGFPESHSQSFA 803

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            + Y +AW K HYP EF  A +  +       +    DAR+  ++I+P  VN 
Sbjct: 804 ALVYYSAWFKYHYPAEFCVALLRAQPMGFYSPQSLIADARRHGVRILPVCVNA 856


>gi|83312099|ref|YP_422363.1| DNA polymerase III, alpha subunit [Magnetospirillum magneticum AMB-1]
 gi|82946940|dbj|BAE51804.1| DNA polymerase III, alpha subunit [Magnetospirillum magneticum AMB-1]
          Length = 1022

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 289/1035 (27%), Positives = 468/1035 (45%), Gaps = 126/1035 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQ  S+Y+ LEGA   + +    +A    AIAI D N L   +     A AAGI+ +
Sbjct: 4    YAELQTLSNYTFLEGASHADELAITASALGLEAIAICDRNTLSGIVRAHVAAKAAGIRLV 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +LD+    +L         FPT             Y RL    SR+  L + +    
Sbjct: 64   VGARLDLTDGASLLC-------FPT---------DRAAYGRL----SRLLTLGRRRAPKG 103

Query: 131  ICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN-LQ 187
             C     ++    EG I++      P++  F   ++Q+AE     ++ + GDRLY+   +
Sbjct: 104  ECHLARADVAEHAEGQILVLIAPD-PLEEGF---AAQLAE-----WRTVVGDRLYLAATR 154

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
            R RG D  R    +++     +PLVATN+ L+ +       DVL  +   T ++      
Sbjct: 155  RFRGDDGER----LRVLAGFGIPLVATNDVLYHTPARRPLADVLTCIRQGTTLAAAGWAL 210

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK+ +EM  +F+  PEAL N +E+ RRC F L               D++  E
Sbjct: 211  SAHGERHLKSPAEMARLFAACPEALANGLEVVRRCRFSL---------------DELAYE 255

Query: 307  EENELRNKAVAG------LEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYF 357
              NE+     AG      LE+   QGA A+ Y        + +L  EL +I ++ F+ YF
Sbjct: 256  YPNEV----AAGMDPQERLEILTRQGA-ARRYPRGVPPKVQAQLAHELALIRQLGFAPYF 310

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V   + +A+   I +  GRGS A S   Y L +T +DP +  LLFERF++ +R   PD
Sbjct: 311  LTVHAIVAFAESRGI-LCQGRGSAANSAVCYCLRVTPVDPAQMDLLFERFISAERGEPPD 369

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  +RR+EVI+++ + YG  R     T    + ++A+RDVG+ + +    V+ L K
Sbjct: 370  IDVDFEHERREEVIQHIYDTYGRHRAGLTATVIHYRTRSAIRDVGKVMGLSEDTVEALAK 429

Query: 478  LIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                  A+    +    D   RE  L   +P + R L ++++L G  RH S H  G VI 
Sbjct: 430  ------ANSGWGRRGIKDEHVRELGLDPTEPGLARTLSLAEELTGFPRHLSQHVGGFVIS 483

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGV 594
               L +LVP+      D  V Q++   ++  GL+K D L L  L+ ++K+ D L    G 
Sbjct: 484  KGRLDELVPIENAGMEDRTVIQWDKDDLDALGLMKVDVLALGMLSCIRKAFDLLRLHHGR 543

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             + L+ +P +D  TY +L     +G+FQ+ES      L  ++P    D++  V++ RPGP
Sbjct: 544  DLCLATLPREDASTYDMLCKADAVGVFQVESRAQMSMLPRLRPRRFYDLVVEVAIVRPGP 603

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            I   +V  Y  R+ GKE +      +  +L +T GV ++QEQ M+IA + +G++ SEAD 
Sbjct: 604  IQGGMVHPYLRRRQGKETVDYPSEELRQVLGKTLGVPLFQEQAMKIAMVAAGFTASEADG 663

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM   +   ++    ++ I G    G  +  A  +F+ +  F +YGF +SHAAA+A 
Sbjct: 664  LRRAMATFRHTGQVGAYGDKLIGGMVARGYERDFAERVFKQIEGFGEYGFPESHAAAFAH 723

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            + Y +AW+K HYP  F  A +  +        +  +DA    ++I P  VN    D  + 
Sbjct: 724  LVYVSAWLKCHYPAAFACALLNSQPMGFYAPAQIVRDAADHGVEIRPVDVNHSDWDCTLE 783

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               +   L  + G+                        +R D ++L      +   AG  
Sbjct: 784  GKALRLGLRQVSGL------------------------ARRDGERLA-----AARGAGYA 814

Query: 892  DCFGYSRMQLLQ--------------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
              +G  R   L+              S+   ++ A W  K        +F         K
Sbjct: 815  SAYGLWRTSGLERAALDRLAAADAFGSMGLGRREAAWAIKALDAPPLPLFEEAPPPPEAK 874

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
            + L   SV    V    +   L      HPL V +   R +GI     S+   +G  + +
Sbjct: 875  VALPPASVGEEVV---GDYAALKLSLKCHPLAVLRDPFRVLGIM-TNASLKDRKGGRVAV 930

Query: 998  AAMVVSKQQKKTRKG 1012
            + +V+ +Q+  +  G
Sbjct: 931  SGLVLVRQRPGSANG 945


>gi|170690324|ref|ZP_02881491.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M]
 gi|170144759|gb|EDT12920.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M]
          Length = 1049

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 286/1042 (27%), Positives = 472/1042 (45%), Gaps = 112/1042 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S++S L GA     + ++ A     A+AITD  +L   +     A  A + 
Sbjct: 9    PAYAELFCLSNFSFLRGASHAEELAERAAQLGYSALAITDECSLAGVVRAHVAAKEAKLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G           ++ N   +P      ++LL    EGY  L EL++ +      K  
Sbjct: 69   FIVG--------SYFRLVNADGSP---AFGLILLARNREGYGNLSELIT-LARTRAPKGE 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L     E   +L       I    F     V + ++    + F  R +V L  
Sbjct: 117  YRLTPQDLSRPDKEYRHLLGVPDCLAILVPSFPAKEDVLDAQVEWLDETFPGRAWVGLVL 176

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H R  D      V  +A   ++P+VA    L          D + A+     V +     
Sbjct: 177  HQRAMDDIHRGAVEFVARNRDVPVVALGEVLMHVRSRKPLQDTITAIRVGKPVHECGYDL 236

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  + +++S  P+AL  TV+IA RC+F L               D+++ E
Sbjct: 237  APNAEQHLRSRLRLANLYS--PDALAATVDIAARCTFSL---------------DELRYE 279

Query: 307  EENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
              +EL           R +   G + R   G     +H Q   ++++ EL +I  +++  
Sbjct: 280  YPDELVPPGFTPGAYLRQETYIGAQRRFPSGI---PHHVQ---EQIEHELELIGDLQYEP 333

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL V D +++A+  +I +  GRGS A S   Y L +T++DP R ++LFERF++ +R   
Sbjct: 334  YFLTVYDLVRFARSQHI-LCQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEP 392

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF   RR+EVI+Y+  KYG +R A      + +A+  LR+ G+AL +    VD +
Sbjct: 393  PDIDVDFEHQRREEVIQYIYRKYGRDRAAIAAAVSTYRARGVLRETGKALGVDLQIVDAV 452

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIV 533
             K      +H     +     RF E  L    P +     ++ +L G  RH S H+ G V
Sbjct: 453  AK------SHHWFDNSADLLKRFEECGLNPDTPLIRAWASLAAQLYGFPRHLSQHSGGFV 506

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QR 592
            I    L++LVP+      +  V Q++   +E  GL+K D L L  L+ ++++LD ++ QR
Sbjct: 507  ISRGKLTRLVPVENAAMPERSVIQWDKDDLESLGLLKIDVLALGMLSAIRRTLDLVSEQR 566

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G + ++  IP +D  TY +++   T+G+FQ+ES      L  M+P    D++  V++ RP
Sbjct: 567  GERFEMQDIPAEDKATYDMISAADTVGVFQIESRAQMSMLPRMRPRTFYDLVIEVAIVRP 626

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GPI    V  Y  R+ G E +      +   L  T GV I+QEQVMQ+A L +G++  EA
Sbjct: 627  GPIQGGAVHPYLRRRQGFEPVTYPGDALKTALGRTLGVPIFQEQVMQVAILAAGFTAGEA 686

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            D LRRAM   K K  + K  +R + G  + G     A  IFE +  F +YGF +SHAA++
Sbjct: 687  DQLRRAMAAWKRKGGLGKYYDRIVLGMQERGYDLAFAEAIFEQIKGFGEYGFPESHAASF 746

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN----TPC 825
            A++ Y ++W+K H P  FLAA +  +        +  QDA++  ++++P  V        
Sbjct: 747  ALLVYASSWLKCHEPEAFLAAMLNSQPMGFYSPSQLVQDAQRHGVKVLPVDVTISGWNSS 806

Query: 826  VDFKVGDNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            ++   G+ R  +   L+ ++G+   TA  I  + A +PF S++D   R     L+RR L 
Sbjct: 807  LEPMAGEKRPAVRLGLSLLRGMKEGTAERIENSRAVRPFASVKDLARRA---ALDRRDL- 862

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
                                   +I   A  +     N+ E ++        +K  L   
Sbjct: 863  -----------------------HILADANALAALAGNRREALW-QSVAAVPEKDMLAAA 898

Query: 944  SVENSSVRFE---------NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--- 991
            +VE+ +              + R +G     HPL++ +P L    +       AT+R   
Sbjct: 899  AVEDETPELGAPSEANDILADYRSVGLTLGRHPLELLRPQL----LANRLMPAATLRTYR 954

Query: 992  -GNNIRLAAMVVSKQQKKTRKG 1012
             G   R   +V  +Q+  T KG
Sbjct: 955  DGRLARGCGLVTVRQRPGTAKG 976


>gi|289661570|ref|ZP_06483151.1| error-prone DNA polymerase [Xanthomonas campestris pv. vasculorum
            NCPPB702]
          Length = 1083

 Score =  345 bits (884), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 278/1039 (26%), Positives = 472/1039 (45%), Gaps = 93/1039 (8%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q  +  P++  L   S +S L GA S   +  +       A+AITD  +L   +   + 
Sbjct: 39   AQVADGLPAYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEA 98

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            +   G++ I+G +    + D  +               VLLV  A GY +L  L++    
Sbjct: 99   SRVTGVRLIVGSEFT--LVDGTR--------------FVLLVENAHGYPQLCALITTARR 142

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                K + R+  +   E+  +   +  G        A +    Q   ++     ++ G+R
Sbjct: 143  A-ASKGAYRLGRA---EVEAQFRDVALGVF------ALWLPGVQPQAEQGAWLHQVLGER 192

Query: 182  LYVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ ++ HR  D     QV+Q LA    +  +A+ +       +    D L A+ H+  +
Sbjct: 193  AFLAVELHREQDDAARLQVLQVLAQQLGMTALASGDVHMAQRRERIVQDTLTAIRHTLPL 252

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +          + +L+ R  + +I+ D    L+  VE+A+RC+F L   +   P+ +  E
Sbjct: 253  ADCGAHLFRNGERHLRTRRALGNIYPD--ALLQAAVELAQRCTFDLSKISYTYPKELVPE 310

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                     + LR    AG+  R   G  AK       R+ ++ EL +IA  K+  +FL 
Sbjct: 311  ----GHTPTSYLRQLTEAGIRKRWPCGISAK------VREDIEKELALIALKKYEAFFLT 360

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++A++ NI +  GRGS A S   YAL IT ++P    LL  RFL+  R   PD D
Sbjct: 361  VQDVVRFAREQNI-LCQGRGSSANSAVCYALDITAVNPDETRLLMARFLSEKRDEPPDID 419

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EV++YV NKYG ER A   T    + K+A+RDV +A  +P  Q+  L    
Sbjct: 420  VDFEHERREEVLQYVYNKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCY 479

Query: 480  P-NDPAHPVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
               +   P+       + R  EA   LA+P ++++L +++ L    RH S H  G VI D
Sbjct: 480  GWGNGETPM-------EQRIEEAGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISD 532

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK 595
             PLS LVP+     +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG  
Sbjct: 533  EPLSLLVPVENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRD 592

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              ++ +P DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 593  YSIATLPGDDLPTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPI 652

Query: 656  --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              D +  Y  R+ G+E +    P ++ +LK T GV ++QEQVM++    + Y+ SEAD L
Sbjct: 653  QGDMVHPYLRRRQGREDVNYPSPEVEDILKPTLGVPLFQEQVMELLMHAADYTESEADNL 712

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RR+M   +   +M++ + R        G +      IFE +  F  YGF +SHAA++A +
Sbjct: 713  RRSMAAWRRGGDMEQHRARVRERMQGKGYASIFIDQIFEQIKGFGSYGFPQSHAASFAKL 772

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-----IQIMPPSVNTPCVD 827
             Y + W+K H P  F    +  +        +  QDAR+ +     ++++P  V     D
Sbjct: 773  VYASCWLKRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWD 832

Query: 828  FKVGDNRIYYS-------------LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
              +   R + S             +  + G+    A+ I+ A   + F  + D C R   
Sbjct: 833  NTLVGGRPWRSDDDPGEQPAIRLGMRQVAGLSEVVAQRIVAARRQRAFADIGDLCLRA-- 890

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
              L+ +   +L  AGA           LQ +   +  A+W       +   +     G+ 
Sbjct: 891  -ALDEKARLALAEAGA-----------LQGMVGNRNAARWAMAGVEARRPLL----PGSP 934

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++     F    +      + R +G     HP+ + +P +R+  I G  E      G+ 
Sbjct: 935  EERPV--AFEAPRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRSHGSG 992

Query: 995  IRLAAMVVSKQQKKTRKGS 1013
            + +A +V  +Q+  T KG+
Sbjct: 993  VHVAGLVTQRQRPATAKGT 1011


>gi|311106704|ref|YP_003979557.1| DNA polymerase III subunit alpha 2 [Achromobacter xylosoxidans A8]
 gi|310761393|gb|ADP16842.1| DNA polymerase III, alpha subunit 2 [Achromobacter xylosoxidans A8]
          Length = 1074

 Score =  345 bits (884), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 300/1060 (28%), Positives = 466/1060 (43%), Gaps = 122/1060 (11%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            L + P +  LQ  S++S L+GA     ++D+ A     A+AITD  +L   +    +A A
Sbjct: 12   LAQLPGYAELQCQSNFSFLQGASHPEELIDRAAELGYAALAITDECSLAGVVRAHVEARA 71

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              +  IIG    +              P      + LL  T EGY  L EL++ +     
Sbjct: 72   RKLPLIIGATFQLR-----------AAPDAAPLGLTLLAQTREGYGNLSELIT-LARTRA 119

Query: 125  GKQSVRICLSWLQE--IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK-RLLTFKKLFGDR 181
             K   R+    L +   G   L  L       +  A+  ++ ++AE+ R L   ++F  R
Sbjct: 120  PKGEYRLAPEDLTDPPAGYAHLRHLPE-CLAILSPAYGTDADRMAEQARWLA--RVFPHR 176

Query: 182  LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             +V L   HR  D    + V Q A   ELPLVA              HD L  +     V
Sbjct: 177  AWVGLTLLHRSRDDLHRAAVEQAAQAAELPLVALGQVQMHLRSRKPLHDTLTGIRTRQPV 236

Query: 241  SQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-----QVHAPILPR 294
            SQ         + +L+ R  + +++   P+A+  T+ +ARRC+F L     +    I+PR
Sbjct: 237  SQCGYELSGNAEQHLRTRMRLANLYP--PQAMAQTLAVARRCAFSLDELRYEYPDEIIPR 294

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                            LR + +AG   R   G             +++ EL +I  + + 
Sbjct: 295  ---------GHTPATYLRQETLAGAARRFPLGT------PDSVTTQIEKELALITDLHYE 339

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFL V D +Q+A+   I +  GRGS A S   Y L IT++DP+R + LFERF++ +R  
Sbjct: 340  AYFLTVYDIVQFARGQGI-LCQGRGSAANSAVCYCLGITEVDPVRGNNLFERFISKERNE 398

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+Y+  KYG ER A      S + ++ LRD G AL +    +D 
Sbjct: 399  PPDIDVDFEHQRREEVIQYIYGKYGRERAALTAVVISYRPRSVLRDTGSALGVDLGVIDA 458

Query: 475  LCKLIPNDPAHPV---------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            + +      AH           +L A   D   + AR           ++Q L G  RH 
Sbjct: 459  VAR------AHQWWDGKKEMLRTLGACGLDPESQVAR-------HWASLAQTLMGFPRHL 505

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            S H  G VI    LS+LVP+     +D  V Q++   ++  GL+K D L L  L+ L+++
Sbjct: 506  SQHPGGFVISRGKLSRLVPIENAAMADRSVVQWDKDDLDALGLLKVDVLALGMLSALRRT 565

Query: 586  LDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            L+   Q RG  + L  IP DD  TY ++    T+G+FQ+ES      L  ++P    D++
Sbjct: 566  LELAGQRRGQPLRLQDIPPDDTPTYDMICDADTIGVFQIESRAQMTMLPRLRPRQYYDLV 625

Query: 645  ALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
              V++ RPGPI   +V  Y  R+ GKE        +  +L  T GV I+QEQVMQIA + 
Sbjct: 626  VQVAIVRPGPIQGGMVHPYLRRRQGKEPETYPSEKVRGVLSRTMGVPIFQEQVMQIAVVA 685

Query: 703  SGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            +G++  E+D LRR+M   K K  +DK + + + G   +G     A  +F  +  F +YGF
Sbjct: 686  AGFTPGESDQLRRSMAAWKRKGGVDKYRTKLVGGLLAHGYKLDFAEALFRQIEGFGEYGF 745

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SHAA++A+++Y ++W+K H P  FLAA +  +        +  QDAR+  + ++PP V
Sbjct: 746  PESHAASFALLAYASSWLKRHEPEAFLAALLNSQPMGFYAPAQLVQDARRHGVCVLPPDV 805

Query: 822  NTPCVDFKV--------GDNR---------------IYYSLAAIKGVGTTTARHIMEASA 858
                 D  +        G  R               +   L+ I+G+    AR I +A A
Sbjct: 806  TISGWDSALETLPEGHPGARRTTHPHAPSTDGPRPAVRLGLSLIQGMREDAARRIEDARA 865

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
              PF    D   R     LNR  L +L    AL      R Q           A W E  
Sbjct: 866  TAPFADTGDLARRA---ALNRHDLNALAAGDALRTLAGHRRQ-----------ASW-EAA 910

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
             + +  ++    +     +    + S  +       + R +G     HP+ + +P L   
Sbjct: 911  ASVQSRDLL---RDAAIQETQAPQLSAPSEGQTVAADYRSVGLTLHSHPVALLRPQLAAR 967

Query: 979  G------IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
                   + GY +          R   +V  +Q+ +T KG
Sbjct: 968  NFQPASVLNGYPDKRVA------RACGIVTVRQRPQTAKG 1001


>gi|218532913|ref|YP_002423729.1| DNA polymerase III subunit alpha [Methylobacterium chloromethanicum
            CM4]
 gi|218525216|gb|ACK85801.1| DNA polymerase III, alpha subunit [Methylobacterium chloromethanicum
            CM4]
          Length = 1071

 Score =  345 bits (884), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 292/1034 (28%), Positives = 461/1034 (44%), Gaps = 98/1034 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S   LQV + +S L GA S   +    +    PA+ +TD  +L   +   Q A   G++ 
Sbjct: 6    STPELQVTTHFSFLRGASSPEELFSAASLLGIPALGVTDHGSLAGMVRAHQAAKVTGMRL 65

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+LD+D   +              P +V     A  Y RL  L+S +     GK   
Sbjct: 66   VVGCRLDLDDLSS--------------PLLVYPTDRA-AYGRLCRLLS-LGKAKGGKGRC 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QR 188
            R+    L+E       +L     G    +   N        L  FK LFG R    L +R
Sbjct: 110  RLTWRDLEEWQEGFFAILLAEQPG----SALLND-------LARFKGLFGARASCALTRR 158

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ----KD 244
             R  D  R   +   A    +P VAT + L+         DV+  +     + +    K+
Sbjct: 159  FRPDDADRLDALAAAARAARVPTVATGDILYHVAGRRRLQDVVTCIRLGLTIDRAGFAKE 218

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R     D +LK  +E   +F+  PEAL    EIA  C F L   A   P   E   D + 
Sbjct: 219  R---HADRFLKPPAETARLFARFPEALARAGEIAAACRFSLDDLAYTYP--TESREDGLS 273

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYFLIVA 361
             +E           L+V    GA A+ Y A   +   ++L  EL++I R+ ++ YFL V 
Sbjct: 274  PQER----------LDVLTWAGA-ARRYPAGVPEAVTRQLHHELDLIGRLAYAPYFLTVE 322

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
              + +A +  I +  GRGS A S   + L IT IDP R +LLFERF++  R   PD D+D
Sbjct: 323  SIVAFANREKI-LCQGRGSAANSAVCFCLGITSIDPTRQNLLFERFVSEARREPPDIDVD 381

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EVI+++   YG  R A        +++ ALR+VG+ + +P      + ++  +
Sbjct: 382  FEHERREEVIQWIFQTYGRHRSALTAIVSRFRSRGALREVGKVMGLPEDVTGAINRMTWS 441

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRP 538
              +  V       +   RE  L +P   RL   L I+++L G  RH S H  G V+    
Sbjct: 442  WSSEGVG------ERELRELNL-NPDDRRLRLTLAIARELIGTPRHLSQHPGGFVLTLDR 494

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L +LVP+     +D  V +++   I+    +K D LGL  L  L+++ D LA+ +    D
Sbjct: 495  LDELVPVEPAAMADRQVIEWDKDDIDALKFMKVDVLGLGMLGCLRRAFDLLAEVKNDPHD 554

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            L+ IP  D  T+ ++    TLG+FQ+ES      L  M+P    D++  V++ RPGPI  
Sbjct: 555  LASIPSKDEPTFAMIRRADTLGVFQIESRAQMAMLPRMKPKEFYDLVIEVAIVRPGPIQG 614

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D +  Y  R+ G E++    P +  +L++T GV ++QEQ MQ+A + +G+S +EAD LRR
Sbjct: 615  DMVHPYLRRREGLEEVTYPTPELKAVLEKTLGVPLFQEQAMQVAMVGAGFSATEADELRR 674

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +M   K    + + + R + G   NG ++  A   F+ L  F  YGF +SHAA++A+++Y
Sbjct: 675  SMATFKFTGGVHRFQNRLVEGMVANGYARDFAERTFKQLEGFGSYGFPESHAASFALLAY 734

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVDFKVG 831
             ++WMK H+P  F AA +  +        +  +DAR   ++I P  VN     C    +G
Sbjct: 735  ASSWMKCHHPDVFCAALLNAQPMGFYAPAQIVRDARAHGVEIRPLDVNFSQWDCTLESLG 794

Query: 832  DNRIYYS----LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
              R  ++    L    G+       ++ A   +PF SL +   R              + 
Sbjct: 795  SGRKLFAVRLGLRLASGLAERDGHRLVAARGGRPFASLPELADRAG------------IP 842

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--------AHEKGTFSDKIT 939
            A +L C    R    +SL   ++ A W  K        +F        A    T    ++
Sbjct: 843  AASLTCL--VRADAFRSLGLNRREAAWAVKALRPDPLPLFAALSAPIQAEPAQTAEPAVS 900

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
            L   S     V    +    G     HPL   +  L  +G +          G  I +A 
Sbjct: 901  LPAMSAGGEVV---ADYCANGLSLRAHPLAFLRETLTTLGARPCAALERVGNGGAIVVAG 957

Query: 1000 MVVSKQQKKTRKGS 1013
            +V+ +Q+  + KG+
Sbjct: 958  IVLMRQRPGSAKGT 971


>gi|227487016|ref|ZP_03917332.1| error-prone DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227093090|gb|EEI28402.1| error-prone DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 1045

 Score =  345 bits (884), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 226/648 (34%), Positives = 331/648 (51%), Gaps = 63/648 (9%)

Query: 271 LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE---LRNKAVAGLEVRLAQGA 327
           +E TV +A RC+F   + +P LP +      D+ +   NE   LR        VR     
Sbjct: 279 VEETVRVAHRCAFAFDLVSPNLPLW------DVPEPYGNEMDYLRGIVDKRTPVR----- 327

Query: 328 IAKGYHA------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
               YH+      +  R++++ EL VI  + F GYFLIV D + +  + NI    GRGS 
Sbjct: 328 ----YHSRPESIKKKAREQIERELAVIEELDFPGYFLIVNDIVDFCHRENI-YCQGRGSA 382

Query: 382 AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
           A S   +AL IT ++P+   LLFERFL+PDR   PD D+D    RR+EVI+YV  KYG +
Sbjct: 383 ANSAVCFALGITAVEPIHAKLLFERFLSPDRDGPPDIDLDIEAGRREEVIQYVYQKYGRD 442

Query: 442 RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
             AQ+    + + K A+RD GRAL  P   +D   + +  +P  PV              
Sbjct: 443 NAAQVANVITYRTKGAVRDAGRALGYPQGTIDAWSRGV-EEPPEPV-------------- 487

Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
                     + ++ + +G  RH   H+ G+VI DRP++ +VP       +  V Q++  
Sbjct: 488 ----------VALAAQFKGQPRHLGIHSGGMVICDRPIADVVPTEWARMENRSVIQWDKD 537

Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
                GL+KFD LGL  L  L   +D +   RG  V L  IP DD   Y +L    T+G+
Sbjct: 538 AAAYGGLVKFDLLGLGMLGALHHMVDQVKTHRGTDVHLWEIPLDDPHIYEMLQRADTVGV 597

Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLI 678
           FQ+ES      L  ++P    DI+  V+L RPGPI    V  Y  R+NG+E +   HP +
Sbjct: 598 FQVESRAQMSTLPRLKPRRFFDIVVEVALVRPGPIQGGSVHPYIRRRNGQEPVTYDHPCL 657

Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISG-A 736
           +  L +T G+ ++QEQ+MQ+A+  +G++ +EAD LRRAMG K+  E M K KERF  G A
Sbjct: 658 ENALGKTLGIPLFQEQLMQMAKDAAGFTGAEADELRRAMGSKRSPERMAKLKERFFDGLA 717

Query: 737 SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
           + +GI+  +A  ++  +  FA YGF +SH+ ++A + Y +AW K +YP EF    +  + 
Sbjct: 718 ATHGITGDVAQKLWMKMVAFAAYGFPESHSQSFAGLVYFSAWFKYYYPAEFTVGLLRAQP 777

Query: 797 DNVEKIKKFCQDARQFNIQIMPPSVNTPC--VDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
                 +    DAR+  I I+P  V       D   G   I   L  + G+GT  A+ + 
Sbjct: 778 MGFYSPQSLIADARRHGITILPIDVQVSGEEADTADGGRAIRLGLNLVSGLGTAAAKRVE 837

Query: 855 EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
           ++   +PF S+ D   R D   L    +E+L  AGALD FG  R Q L
Sbjct: 838 KS---QPFTSISDLSRRAD---LTVSQVEALARAGALDSFGVDRRQAL 879



 Score = 45.8 bits (107), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 58/130 (44%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +F  L   SSYS L GA     ++++        +A+TD +  + A+ F++ A   G++ 
Sbjct: 49  AFAELHCTSSYSFLGGASDPEELVERAVQLGLTGLALTDRDGFYGAVAFAEAARDTGLET 108

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           + G +L ++    L +   G   + T+  ++     A G + ++       +   G   V
Sbjct: 109 VFGAELSLEPDRALTVLAIGYEGYVTLSHLITDAHMASGEKDVLYYPPLETIAAAGGLHV 168

Query: 130 RICLSWLQEI 139
            +  +WL E+
Sbjct: 169 LVDHAWLPEL 178


>gi|330985361|gb|EGH83464.1| error-prone DNA polymerase [Pseudomonas syringae pv. lachrymans str.
            M301315]
          Length = 1031

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 283/1040 (27%), Positives = 468/1040 (45%), Gaps = 113/1040 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + ++ +     A+AITD   L   +   Q + + G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASISTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-----------RM 119
            IG ++ I+                  P  VLLV +  GY+ L +L++           R+
Sbjct: 65   IGSEMHIE----------------NGPKAVLLVESQTGYEALCKLITVARRRARKGEYRL 108

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
               D       +   WL +I  +    L  G                        ++ F 
Sbjct: 109  LREDFEPSPDGLLAIWLPDIEGDAQACLAHGR---------------------WLRERFA 147

Query: 180  DRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +RL++ ++ HRG D   R + ++ LA +  +P VA+ +    +       D + A+ H T
Sbjct: 148  ERLWLGVELHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHT 207

Query: 239  VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V++         + +L+    +   + D    L  +V IARRC+F L+      P    
Sbjct: 208  TVAEAGHLLFANGERHLRPLDALAEHYPDW--LLAESVRIARRCTFDLKQLKYEYP---- 261

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E     +   + LR     G   R   G           R +++ EL +I   KF  YF
Sbjct: 262  HELVPKGQTPTSWLRELTERGARKRWPNGLTPA------TRAQVEKELALITEKKFDSYF 315

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D +++A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD
Sbjct: 316  LTVHDIVEFARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERNEPPD 374

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  DRR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L  
Sbjct: 375  IDVDFEHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAVRDVAKVLGLPPDQINALAD 434

Query: 478  LIPNDPAHPVSLQAIADDSRFREARL-AD-PSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                  A      ++    R RE    AD P + R+L ++ +L G  RH S H  G VI 
Sbjct: 435  ------AFSRWSDSLPSPERLREYGFDADMPILKRVLALTGELIGFPRHLSQHPGGFVIS 488

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594
            + PL  LVP+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG 
Sbjct: 489  EHPLETLVPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGK 548

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +  L+ +P DD +TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGP
Sbjct: 549  RWTLADLPGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGP 608

Query: 655  IDNIVVYNN-RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            I   +V+   R+  KE+ ++  P +  + + T GV ++QEQVM++A + + Y+  EAD L
Sbjct: 609  IQGDMVHPYLRRRNKEEAITYPPKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADEL 668

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM   K    ++  +ER  +G   N      A  IFE +  F  YGF +SHAA++A++
Sbjct: 669  RRAMAAWKRHGGLEPHRERLRTGMLNNDYDVDFADRIFEQIKGFGSYGFPESHAASFALL 728

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG- 831
            +Y + W+K H P  F  A +           +  QDAR+ +I+I P  V     D  +  
Sbjct: 729  TYASCWLKCHEPAAFTCALINSWPMGFYNPDQLLQDARRHHIEIRPVDVRYSDWDCSLEP 788

Query: 832  --------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                    +  I   L  ++G     AR I  A + + F    D   R     L+ R  E
Sbjct: 789  LDHPDSTRNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLTLRA---GLDARAAE 845

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            +L  +GA           L+ L   +  A+W E         +F ++  +   ++TL   
Sbjct: 846  ALADSGA-----------LRGLIGHRHRARW-EVAGVEAQRPLF-NDLPSEDTQVTLPLP 892

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR---LAAM 1000
            +V         +   LG     HPL + +   R++  K +  S   +   N R   +A +
Sbjct: 893  TVAED---LMADYATLGTTLGPHPLALLR---RQLAAKRFRSSQDLLSLENDRTLSVAGL 946

Query: 1001 VVSKQQKKTRKGSRIGWVTF 1020
            V+ +Q+  T  G     VTF
Sbjct: 947  VIGRQRPGTASG-----VTF 961


>gi|134296110|ref|YP_001119845.1| DNA polymerase III subunit alpha [Burkholderia vietnamiensis G4]
 gi|134139267|gb|ABO55010.1| error-prone DNA polymerase, DnaE-like protein [Burkholderia
            vietnamiensis G4]
          Length = 1093

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 296/1068 (27%), Positives = 471/1068 (44%), Gaps = 132/1068 (12%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA     ++ + A     A+AI D  ++   +     A  A + 
Sbjct: 21   PDYAELCCVSNFTFLRGASHAEELVARAAQLGYQALAIADECSMAGIVRAHVAAKEAELP 80

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG--K 126
             I+G +  +       +T  GK       S++ L    EGY  L EL++ +    +G  K
Sbjct: 81   LIVGSRFRL-------VTADGKLAV----SLIALAQNREGYGNLCELIT-LARTREGVEK 128

Query: 127  QSVRICLSWLQEI--------GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             S R+    L           G    +++     G  D      +           + +F
Sbjct: 129  GSYRLTPRDLDHPEAPFEHLRGLPDCLVIVEAEYGAADERLIAQADWA--------RTVF 180

Query: 179  GDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
              R ++ L   HR  D   E  V   A    L +VA              HD L AV   
Sbjct: 181  PGRAWLGLCLLHRSRDDEHEDAVRWAARETGLRMVALGGVEMHVRSRKPLHDALTAVRLG 240

Query: 238  TVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              +++         +  L++R  + +++S   EAL+ TV IA  C F L       P  +
Sbjct: 241  KPIAECGFDLAPNAERCLRSRLRLANLYSR--EALDETVRIAELCDFSLDELRYEYPSEV 298

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E +       + LR +   G + R  QG           + +++ EL++IA M++  Y
Sbjct: 299  IPEGET----PASYLRKETYLGAQRRFPQGV------PTVVQSQIEHELDLIAAMRYESY 348

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D +++A+  +I +  GRGS A S   Y L IT++DP R +LLFERF++ +R   P
Sbjct: 349  FLTVYDIVRFARSQHI-LCQGRGSAANSAVCYCLGITEVDPERGNLLFERFISKERGEPP 407

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF   RR+EV++Y+  KYG  R A      S ++++ALRD+G+AL +    V+++ 
Sbjct: 408  DIDVDFEHQRREEVVQYIYRKYGRHRAALAAAVISYRSRSALRDMGKALGVDLGLVEQVA 467

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            +      AH     A     RF EA LA   P   +   ++  L G  RH S H  G VI
Sbjct: 468  R------AHHWWDNAKDLAERFTEAGLAPESPIAKQWANLAHALRGFPRHLSQHVGGFVI 521

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
                LS+LVP+ R       V +++   +E  GL+K D L L  L+ ++++LDF+++  G
Sbjct: 522  SHSKLSRLVPIERASMEGRSVIEWDKDDLEALGLLKVDVLALGMLSAIRRALDFVSEGTG 581

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
               ++  IP +D ETY +++   T+G+FQ+ES      L  ++P+   D++  +SL RPG
Sbjct: 582  EPFEMQDIPKEDPETYAMISKADTVGVFQIESRAQMTMLPRLKPERFYDLVIEISLIRPG 641

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PI   +V  Y  R+ G E +    P ++  L  T GV I+QEQVMQ+A L +G++  EAD
Sbjct: 642  PIQGGMVHPYLRRRQGIEPVSYPSPEMEAALSRTLGVPIFQEQVMQVAMLAAGFTPGEAD 701

Query: 712  VLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRR+M   K K  + +  +R + G +  G +   A +IF+ +  F +YGF +SHAA++A
Sbjct: 702  QLRRSMAAWKRKGGLGQYYDRILDGMTSRGYTVEFAESIFKQIEGFGEYGFPESHAASFA 761

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT------- 823
            V+ Y ++W+K H+P  FLAA +  +           QDAR+  ++++   V+        
Sbjct: 762  VLVYASSWLKRHHPAAFLAALLNSQPMGFYSPSALVQDARRHGVRVLSVDVSVSDWAATL 821

Query: 824  -----------------------PCVDFKVGDNRI------YYSLAAIKGVGTTTARHIM 854
                                     VD   G + I         LA  +G+       I 
Sbjct: 822  ESEATDGEAGGGVGATVGDGARKSKVDKAAGRDPIDRARAVRLGLAQARGLSQEAGWRIE 881

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQSLDNIQKYAQ 913
            EA A +PF+S+ D   R     LNR  L++L  AGAL    G+ R  L Q +        
Sbjct: 882  EARAVRPFESVADLALRA---SLNRHDLDALAQAGALASLAGHRREALWQVV-------- 930

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE---------NEQRVLGFYFS 964
                               +  DK  L   ++E  +V            ++ R LG    
Sbjct: 931  ------------------ASLPDKDLLRGAAIEEEAVALPAPREAEDIVSDYRALGLTLG 972

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             HPL + +  L        E   A   G   R   +V  +Q+  T  G
Sbjct: 973  RHPLSLLRERLAAQRFMTAEILNAYPNGRLARACGIVTVRQRPGTASG 1020


>gi|254516583|ref|ZP_05128642.1| putative DNA polymerase III alpha subunit subfamily [gamma
            proteobacterium NOR5-3]
 gi|219675006|gb|EED31373.1| putative DNA polymerase III alpha subunit subfamily [gamma
            proteobacterium NOR5-3]
          Length = 1036

 Score =  344 bits (882), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 292/1030 (28%), Positives = 482/1030 (46%), Gaps = 97/1030 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S YS L GA     ++ + AA    AIAITD  +L   ++    A    IQ I
Sbjct: 3    YCELHCLSCYSFLRGASRPEELVAQAAASGYTAIAITDECSLAGVVKAHVAAREHNIQLI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +    +L      +T +  +  ++ L     G +R  +    + L D      R
Sbjct: 63   IGSEFKLSEGIHLVALAPNRTAYGELSGLISL-----GRRRSPKGEYEVTLRDVIFHLKR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              L WL +  +E            I+R +     Q+A        +L  +R+++ +Q   
Sbjct: 118  CLLIWLPKDDSE------------INRGY---GKQLA--------RLCRERVWIGVQYLL 154

Query: 191  GYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
            G D  R  + +Q LA   +LPL+A  +           HDV+ A+ ++  V++    R+ 
Sbjct: 155  GNDEIRRYRALQSLASALQLPLLACGDVQMHCATRKPLHDVMTALRYNCSVAELGSRRLP 214

Query: 249  TPDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +L++ +++  ++   P + LE T+ +ARRC F L       P  +  +  + +   
Sbjct: 215  NAQQHLRSINQLERLY---PRSLLEETLNVARRCQFSLSELRYEYPEEVVPKGHNAR--- 268

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR     G   R   G  +        RQR++ EL +IA + +  YFL V D +++A
Sbjct: 269  -DYLRELTWQGANQRWPDGTPSV------IRQRIEKELALIAELDYEYYFLTVYDIVRFA 321

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A SV  Y L IT++ P + SLLFERF++ +R   PD D+DF  +RR
Sbjct: 322  RDRGI-LCQGRGSAANSVVCYCLFITEVSPEKISLLFERFISRERDEPPDIDVDFEHERR 380

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+ +KY   R A   T  + +A++A+RDVG+AL +    VD L K +        
Sbjct: 381  EEVIQYIYDKYSRRRAALAATVITYRARSAVRDVGKALGLDPIFVDDLAKSL-------- 432

Query: 488  SLQAIADDSRFREARLAD-----------PSVDRLL-EISQKLEGLYRHASTHAAGIVIG 535
               A  D  R  EAR ++           P+  +L  ++ Q++ G  RH S H  G VI 
Sbjct: 433  ---AWWDKQRDLEARFSEHGLKTGQQDDKPNTAQLFYQLVQEILGFPRHLSQHVGGFVIS 489

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
              P+SQLVP+     +D  V Q++   IE  GL+K D L L  L+ ++KSL  + +   +
Sbjct: 490  RGPISQLVPVENASMADRTVIQWDKDDIEALGLLKVDILALGMLSAIRKSLALVHRYDPR 549

Query: 596  V-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +  L  IP +D  TY +L    ++G+FQ+ES      L  ++P C  D++  +++ RPGP
Sbjct: 550  IRQLQDIPAEDMATYRMLQRADSIGVFQIESRAQMSMLPRLKPACFYDLVIEIAIVRPGP 609

Query: 655  I--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            I  D +  Y  R+ G E I      +  +L+ T GV I+QEQV+++A + +G++  EAD 
Sbjct: 610  IQGDMVHPYLRRRQGLESISYPDEAVKSVLERTLGVPIFQEQVIRLAMVAAGFTGGEADQ 669

Query: 713  LRRAM---GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            LRRA+   G+  K  +   +++   G    G S+  A  +FE +  F  YGF +SH+A++
Sbjct: 670  LRRAITNWGRNSK--LLSFEKKLTDGMLSRGYSEDYAQRLFEQIKGFGGYGFPESHSASF 727

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+++Y ++W+K H+P  F    +  +        +  QDAR+  +  +   VN    D +
Sbjct: 728  ALLAYVSSWLKCHHPGAFYVGLLNSQPMGFYTPSQLIQDARRHGVITLAADVNHSDWDHQ 787

Query: 830  VGDNR-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
            + D+        I   L  IKG+    AR I  A    P+  + D   R +   LNRR +
Sbjct: 788  LLDDGEQGTGAPIRLGLRLIKGLSKDAARRISAARRHSPYRQIADLRKRAE---LNRRDM 844

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E+LV A AL      R Q    +  ++     +E  +               SD + L +
Sbjct: 845  EALVDADALVSLSGHRHQARWQVMALEPARPLLEYEQQAT--------GALLSDDVCLPE 896

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             ++  S +    + R  G     HPL + +        K  ++  A   G  +R+A +V 
Sbjct: 897  PAIAESVI---ADYRSTGVTLRAHPLALLRGQAPFNSCKRQQDLAALNDGRFVRIAGLVT 953

Query: 1003 SKQQKKTRKG 1012
             +Q+  T  G
Sbjct: 954  CRQRPGTASG 963


>gi|320011646|gb|ADW06496.1| DNA polymerase III, alpha subunit [Streptomyces flavogriseus ATCC
            33331]
          Length = 1161

 Score =  344 bits (882), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 282/1074 (26%), Positives = 477/1074 (44%), Gaps = 82/1074 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL   S +SL  GA     + ++ A     A+A+TD ++L  A+ F++     G++P
Sbjct: 3    GFTHLHTVSGFSLRYGASHPERLAERAAGRGMDALALTDRDSLSGAVRFARACEKEGVRP 62

Query: 70   IIGCQLDIDMQ-DNLKMTNQGKTPF-------PTVPSIVLLV-STAEGYQRLIELVSRMY 120
            I G +L +  Q       ++ +TP         + P +  L    A G+  L  LV+  +
Sbjct: 63   IFGTELAVAPQVTEGAPAHRPRTPARGGAFVDESAPRVTFLARDGARGWAELCRLVTAAH 122

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 + + R  L+    +  EGL +L G +S  +  A        A   L+ +++++GD
Sbjct: 123  SGAADRGAGR-PLAGRDALPAEGLTVLLGPAS-EVGAALAAGRPDRAAALLVPWREIYGD 180

Query: 181  RLYVNLQRH----RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             L +    H     G    R  ++ V  A    +  V TN   +         DVL +  
Sbjct: 181  ALRLEAVHHGREGTGPGSLRLAARTVGFAAEQGVRAVLTNAVRYADPGQGPVADVLDSAR 240

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARRCSF- 283
                V  +  P  + + +LK+ + M      +  A           L  T   A  C   
Sbjct: 241  RLVPVDPRRTPLDSGERWLKDDAAMRGTAERIASAAGLGRGAGERLLAETRHTADACRVD 300

Query: 284  ------ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY-HAQD 336
                  +  VH P  PR +  E            R  A   L  R A G +  GY   +D
Sbjct: 301  PARDLGLGSVHFP-EPRLVGAE------------RRTAQRVLATRAAAGMVRHGYDRRRD 347

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
            Y +R+  EL++IA   F+ YFL V+  +   K   I V   RGSGAGS+  + L I   D
Sbjct: 348  YWERMHRELDIIAHHGFATYFLTVSQVVDDVKGMGIRVA-ARGSGAGSLVNHLLGIAHAD 406

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            P+   LL ERFL+  R  +PD D++    RR EV R + +++G ERVA +    + + + 
Sbjct: 407  PIEHGLLMERFLSKRRFVLPDIDVESA--RRLEVYRAIIDRFGTERVAAVSMPETYRVRH 464

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A+RDVG AL M  ++ DRL K  P+  A      A+ +    R    +     RL ++ +
Sbjct: 465  AIRDVGAALSMDPAETDRLAKAFPHIRARDAR-AAMEELPELRAVAGSKEKYGRLWDLVE 523

Query: 517  KLEGLYRHASTHAAGIVIGDRPL---SQLVPMYRDV-------RSDLPVTQFNMKWIEKA 566
             L+ L R  + H  G+++ D  L   + +VP   ++        S +P++QF+   +E  
Sbjct: 524  SLDALPRGIAMHPCGVLLSDDSLLRRTPVVPTSGEIPSLDGGGGSPIPMSQFDKDDVEHL 583

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K D LG++  + +  ++  L +  G ++DL  +P  D ETY L+    TLG FQ+ES
Sbjct: 584  GLLKLDVLGVRMQSAMAHAVTELKRASGQELDLDAVPQGDPETYRLIRDAETLGCFQIES 643

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             G R  +  +QP    D++  +SL+RPGP+  D +  +   ++G+  +   HP ++  L+
Sbjct: 644  PGQRDLVGRLQPATFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRYPHPDLEGALR 703

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T GV+++ EQ++++  +++G    EAD +RR +     E   + +  F   A++     
Sbjct: 704  DTYGVVVFHEQIIEMVNIMTGCGRGEADRVRRGLSD--PESQARIRVWFARRAAQRKYDA 761

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             + V  +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +
Sbjct: 762  QVIVRAWEIIEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-R 820

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASA 858
                DAR+  + ++P  VN      ++     G    +    A+  V   +   +    +
Sbjct: 821  LLLADARRRGVPVLPLDVNRSAAAHRIELVSGGKGEKWGLRLALSDVHGISEAEVARIES 880

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
             +P+ SL DF  R    +  +   E L   GALD FG +R  LL  L  + +  +   ++
Sbjct: 881  GQPYSSLLDFWQRA---RPGKPAAERLAQVGALDSFGANRRDLLLHLSELHRAQR---RS 934

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
             +           G  +  + L      N + R   E  VL    S H +  +   L ++
Sbjct: 935  GSGAAGAQLPLGGGHRTGSVGLPDL---NDAERLSAELGVLSLDVSRHLMGDHHGFLEEL 991

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            G    +       G  + +A   V+ Q    R G R+ + T  +     +  FF
Sbjct: 992  GAVSAKRLREARHGETVLVAGAKVATQTPPVRSGRRVIFTTLDDGTGLVDLAFF 1045


>gi|254247148|ref|ZP_04940469.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
 gi|124871924|gb|EAY63640.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
          Length = 1067

 Score =  344 bits (882), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 292/1034 (28%), Positives = 465/1034 (44%), Gaps = 96/1034 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S+++ LEGA     ++ + A      IAITD  +L   +     A      
Sbjct: 27   PAYAELFCLSNFTFLEGASHAEELVKRAAQLGYSGIAITDECSLAGVVRAHVAAKDLNFP 86

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS--RMYLLDQGK 126
             +IG           K+T    +P      ++LL    EGY  L EL++  RM     G 
Sbjct: 87   LVIG--------SYFKLTQADSSP---ALDLILLAQNREGYGNLSELITLARMRSPKGG- 134

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF--FFNSSQVAEKRLLTFKKLFGDRLYV 184
                 CL+    +  E       G  G +      F    +  + ++    + F  R +V
Sbjct: 135  ----YCLTPQDLLKPEKAYAHLRGMPGCLAILIPKFPAKPEALDAQVEWLLETFPGRAWV 190

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L  H R  D      V  +AY + +P+VA  +            D + A+     V++ 
Sbjct: 191  GLCLHQRAMDNPHAGVVEHIAYGNGVPVVAVGHVTMHVRSRKPLQDTMTAIRIGKPVAEC 250

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                + P+     RS M       P AL  TV I  RC F L               D++
Sbjct: 251  GY-ELAPNAEQHLRSRMRLAHLHHPNALNETVAILSRCGFSL---------------DEL 294

Query: 304  QKEEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            + E  +EL           R +   G   R + G I     AQ     L+ EL +I  + 
Sbjct: 295  RYEYPDELVPAGLTPTEYLRQETYIGAHRRFSNG-IPLNVQAQ-----LEHELELITELS 348

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            +  YFL V D +++A+   I +  GRGS A S   Y L IT++DP R ++LFERF++ +R
Sbjct: 349  YEPYFLTVYDIVKFARSEGI-LCQGRGSAANSAVCYCLGITEVDPARSTMLFERFISRER 407

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
             S PD D+DF   +R+ V++Y+  KYG +R A      + +A+  LRDVG+A+ +    V
Sbjct: 408  NSPPDIDVDFEHQKREIVMQYIYRKYGRDRAAIAAAVSTYRARGVLRDVGKAVGVDAQIV 467

Query: 473  DRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPS---VDRLLEISQKLEGLYRHASTH 528
            DR+ K      AH       AD   RF E+ L DPS   +     ++ +L G  RH S H
Sbjct: 468  DRVAK------AHHW-FDGTADLLERFSESGL-DPSAPIIQTWASLAAQLCGFPRHLSQH 519

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            + G VI    LS+LVP+      D  V Q++   +E  GL+K D L L  L++++++LD 
Sbjct: 520  SGGFVISRGKLSRLVPIENAAMQDRSVIQWDKDDLESLGLLKVDVLALGMLSVIRRALDL 579

Query: 589  LA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            ++  RG   ++  IP +D ETY +++   T+G+FQ+ES   +  L  ++P    D++  V
Sbjct: 580  ISLHRGEPFEMQDIPSEDPETYDMISNADTVGVFQIESRAQQSMLPRLKPRTFYDLVIEV 639

Query: 648  SLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            ++ RPGPI    V  Y  R+ G + +      ++  L  T GV I+QEQVMQ+A L +G+
Sbjct: 640  AIVRPGPIQGGAVHPYLKRRQGIDPVSYPSKDLETALARTLGVPIFQEQVMQVAILAAGF 699

Query: 706  SLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            S  EAD LRRAM   K K  ++   +R +SG    G  +  A  IF  +  FADYGF +S
Sbjct: 700  SPGEADGLRRAMAAWKRKGGLEPYHDRLVSGMLMRGYEREFAEAIFAQIKGFADYGFPES 759

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT- 823
            HAA++A++ Y ++W+K H P  FL + +  +        +  QDA++  + ++P  V   
Sbjct: 760  HAASFALLVYVSSWLKCHEPEAFLVSLLNSQPMGFYSPSQLIQDAKRHGVTVLPADVAIS 819

Query: 824  ---PCVDFKVGDNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                 +++     R  +   L+ + G+    A  I  A A +PF S  D   R    +L+
Sbjct: 820  NWESSLEYPEAGCRPVVRLGLSLLHGMRAEAADRIEMARAVEPFSSTIDLARRA---QLD 876

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            R  L  L           +R   L SL   ++ A W E       +++ A       D+ 
Sbjct: 877  RHDLHVL-----------ARSDALASLAGGRRSALW-ESVVAAPDKDLLA--SANVVDET 922

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
                ++ E   +  +++ + +G     HPL + +P+L    +           G   R  
Sbjct: 923  PDLGWASEGEEI--QSDYQSMGLTLRRHPLALLRPMLHAKKLMPAATLNTYPNGRLARAC 980

Query: 999  AMVVSKQQKKTRKG 1012
             +V  +Q+  T KG
Sbjct: 981  GLVTVRQRPGTAKG 994


>gi|186476725|ref|YP_001858195.1| DNA polymerase III subunit alpha [Burkholderia phymatum STM815]
 gi|184193184|gb|ACC71149.1| DNA polymerase III, alpha subunit [Burkholderia phymatum STM815]
          Length = 1049

 Score =  343 bits (881), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 284/1044 (27%), Positives = 475/1044 (45%), Gaps = 116/1044 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S+++ L+GA     + ++ +      +AITD  +L   +     A   G+ 
Sbjct: 9    PAYAELFCLSNFTFLQGASHAEELAERASQLGYSGLAITDECSLAGVVRAHVAAKEKGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +IG           ++ N   TP      ++LL    EGY  L EL++ +      K  
Sbjct: 69   LVIGSYF--------RLRNADGTP---AFGLILLAQNREGYGNLSELIT-LARTRAPKGE 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L     E   +        I    F  +  V + ++    + F  R +V L  
Sbjct: 117  YRLTPHDLSRPDRENAHLRGMPDCLAILVPDFPANEAVLDAQIEWLDETFQGRAWVGLVL 176

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H R  D      V  +A    +P+VA  + +          D + A+     V +     
Sbjct: 177  HQRAMDDIHRGSVEYVANQQNVPVVALGHVVMHVRSRKPLQDTMTAIRVGRPVHECGY-E 235

Query: 248  VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            + P  + +L++R  + +++ D    +  T+ +  RC+F L               D ++ 
Sbjct: 236  LAPNAEQHLRSRLRIANLYPD--HTVRETISVLSRCAFSL---------------DQLRY 278

Query: 306  EEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            E  +EL           R +   G + R   G         + +Q+++ EL +IA + + 
Sbjct: 279  EYPDELVPAGYTPTQYLRQETYIGAQHRFPSGI------PFNVQQQIEHELALIADLGYE 332

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFL V D +++A+  +I +  GRGS A S   Y L +T++DP R ++LFERF++ +R  
Sbjct: 333  PYFLTVYDIVRYARSQHI-LCQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGE 391

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+Y+  KYG +R A      + + + ALR+ G+AL +    VD 
Sbjct: 392  PPDIDVDFEHQRREEVIQYIYRKYGRDRAAIAAAVSTYRPRGALRETGKALGVDPQLVDT 451

Query: 475  LCKLIPN-DPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAG 531
            + K     D +H +         RF E+ L    P +     ++ +L    RH S H+ G
Sbjct: 452  VAKSHHWFDTSHDLL-------KRFEESGLDPEKPLIQAWARLAAQLLNFPRHLSQHSGG 504

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             VI    L++LVP+     +D  V +++   +E  GL+K D L L  L+ ++++LD +A 
Sbjct: 505  FVISRGKLTRLVPVENAAMADRSVIEWDKDDLEALGLLKVDVLALGMLSAIRRTLDLVAD 564

Query: 592  R-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            R G + ++  IP +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ 
Sbjct: 565  RTGERFEMQDIPAEDKATYDMISNADTIGVFQIESRAQMSMLPRLRPQKFYDLVIEVAIV 624

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGPI    V  Y  R+   E +      +   LK T GV I+QEQVMQ+A L +G++  
Sbjct: 625  RPGPIQGGAVHPYLRRRQKLEPVSYPSEQLKIALKRTLGVPIFQEQVMQVAILAAGFTPG 684

Query: 709  EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EAD LRRAM   K K  ++K  +R ++G  + G  ++ A  IFE +  F +YGF +SHAA
Sbjct: 685  EADQLRRAMAAWKRKGGLEKYYDRIVNGMRERGYEQSFAEAIFEQIKGFGEYGFPESHAA 744

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++A++ Y ++W+K H P  FLAA +  +        +  QDAR+  ++++P  V     D
Sbjct: 745  SFALLVYASSWLKCHEPEAFLAAMLNSQPMGFYSPSQLVQDARRHGVRVLPVDVTVSGWD 804

Query: 828  FKV----GDNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
              +    G  R  +   L+ ++G+    A  I  A A +PF S+ D   R    +LNRR 
Sbjct: 805  SSLETIRGQQRPAVRLGLSLLRGMKDGAAERIENARAVRPFRSVHDLARRA---QLNRRD 861

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            L  L  A AL     +R + L           W              H      DK  L 
Sbjct: 862  LHVLADANALSSLAGNRREAL-----------W--------------HSVAAVPDKDMLS 896

Query: 942  KFSVENSSVRFEN---------EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
              +V++ +              + R +G     HPL++ +P+L +  +       +T+R 
Sbjct: 897  VAAVQDDTPELGAPSEAQDIVADYRSVGLTLGRHPLELLRPVLLEQRLL----PASTLRD 952

Query: 993  -NNIRLA---AMVVSKQQKKTRKG 1012
              N RLA    +V  +Q+  T KG
Sbjct: 953  YRNGRLARGCGIVTVRQRPGTAKG 976


>gi|116334925|ref|YP_802420.1| DNA polymerase III alpha subunit [Candidatus Carsonella ruddii PV]
 gi|116235206|dbj|BAF35054.1| DNA polymerase III alpha subunit [Candidatus Carsonella ruddii PV]
          Length = 1113

 Score =  343 bits (881), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 278/995 (27%), Positives = 500/995 (50%), Gaps = 66/995 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL VH+ YS+++G + +  +L         +I+ITD   + S  E+ + +    I+PI
Sbjct: 4   FTHLNVHTEYSIIDGIIKIGKLLQIYNKLGIKSISITDILTIASFPEYYEYSLKKKIKPI 63

Query: 71  IG--CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IG  C L I+          GK     + +++L+     GY +LI+++S  +     +  
Sbjct: 64  IGTECFLLIN----------GK-----ILNLILIAKNYLGYLKLIKIISNAWRYGNIENG 108

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
           V + L WL +   + LI++       ++  F F    +  K L      + +  Y  + R
Sbjct: 109 VFLKLHWLYKFKNK-LIVIINLRYYLLESFFNFCEFSIFIKELTI---NYNNNFYFEINR 164

Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   +    ++++  +    + LVATN+  F+ ++D+  +   + +  + +  +K    
Sbjct: 165 INLSLEELINNKIIYFSKLFNIKLVATNSVKFIFKKDFPINLSKILICQNKIFEEKLFFD 224

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +   Y+K   +M  +F D+ E++EN   I   C+ +   +   LP+          K  
Sbjct: 225 YSNQQYIKTYKDMKKLFFDILESIENINLIILNCNVLFNFYKFNLPKI---------KIS 275

Query: 308 ENELRNKAVAGL-EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++R K    L +  L +    K    + Y  R++ E+ +  ++    Y+LI+ +FI W
Sbjct: 276 NFKIRKKIFDNLVKAGLKKRIKKKNKQIKIYLNRVNKEVLLTKKLGLIDYYLIITEFIFW 335

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +K NI  GPGRGSG+ S+  Y+L ITDIDP+  +LLFERF + +R+ +PD D+DFC   
Sbjct: 336 TRKKNIISGPGRGSGSSSLLCYSLYITDIDPINENLLFERFFSSERLGIPDLDLDFCVLE 395

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           RD +I ++ N YG+  ++QI+TF ++ AK+++RD+ RA+ M Y   +R  + +P   +  
Sbjct: 396 RDNIISHLYNYYGYNNISQIVTFHTVSAKSSIRDLSRAIGMDYISGERFSRSVP--FSIE 453

Query: 487 VSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
           +S++ I  ++   R     +     + +IS KLEG+ R+ S HA G+VI +  L+   P+
Sbjct: 454 LSMEHIFRENISVRSYISKNHKCFEIWKISSKLEGIARNISKHAGGVVICNTGLNNFTPI 513

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
             D   +  +T +    ++  GLIKFDFLGLKTL+ +  +L  ++++           DD
Sbjct: 514 LFD--ENECMTHYEKIILQDIGLIKFDFLGLKTLSTISLTLKMISEKNT----GEFFIDD 567

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
           + T+ ++    T  IFQLES G+++ ++ +  + I D+I L+SLYRPGPI +  +  + N
Sbjct: 568 YHTFQMINNLDTELIFQLESYGIKKIIKKLPIENIFDLINLLSLYRPGPIQSGFINDFIN 627

Query: 664 RKNGKEKIVSIHPLIDP-------MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
           RKN   K  + HP  D        +L  T G+I++QEQV+Q+    +  S  +++ +  +
Sbjct: 628 RKNNIVK--TYHPYSDCDFLQSKIILANTHGMILFQEQVLQLILFYTKCSNYDSEKIYAS 685

Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
           M KK K ++   K  FI+  +K GI K  +   F ++ KFA Y FNK+HA +Y+ I YQT
Sbjct: 686 MIKKSKIKLKISKLIFINECNKLGIDKKTSSKFFNIIEKFASYSFNKTHAHSYSKIVYQT 745

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
           A++K++Y +E+  +++ ++      I       +  ++    P +N    +FK+    I 
Sbjct: 746 AYLKSNYLLEYCLSNIYVDQLLGIDINNIINIIKSISVFFYKPDINLSDENFKIYKKGIL 805

Query: 837 YSLAAIKGVGTTTARHIMEASADKPF--DSLEDFCSRVDS-KKLNRRVLESLVFAGALDC 893
           Y    +  +       ++    +K F  ++ E FC      K   ++++E+L+F+G  DC
Sbjct: 806 YGFDIVTFIDENFIDKVI-YYRNKLFYYNNFEMFCKIFSVFKIKKKKIIENLIFSGFFDC 864

Query: 894 FGYSRMQLLQS----LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
           F  +R+ L  +     +NI        +  T K    F + K  F  K  L   S+   +
Sbjct: 865 FKINRVILFVNFQFIFENILTLNNEYSRTITYKFVRYFNYAKKFFLFKKILTISSINILN 924

Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
           +    E+++L FY S +PL  Y   L+ +G K + 
Sbjct: 925 I----EKKILKFYTSFYPLVFYS--LKLIGHKNFN 953


>gi|329846730|ref|ZP_08262003.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19]
 gi|328844237|gb|EGF93805.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19]
          Length = 1075

 Score =  343 bits (880), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 285/1026 (27%), Positives = 478/1026 (46%), Gaps = 83/1026 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +V LQ  S +S L G  + +++  +  A    A+AI D N L   +     A   G++
Sbjct: 2    PDYVELQCASYFSFLRGCSAPDDLFAQAKALGMEALAIADRNTLAGIVRAHVAAKETGVR 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIGC+LD  + D +              SI++      GY RL  L+S    L + +  
Sbjct: 62   LIIGCRLD--LTDGM--------------SILVYPVDRAGYGRLCRLLS----LGKSRGG 101

Query: 129  VRIC-LSWLQ-EIGTEGLIMLTGGSSGPIDRAFFF--NSSQVAEKRLLTFKKLFGDRLYV 184
               C L W   E   EGLI            A F    + ++   RL  FK++F DR Y+
Sbjct: 102  KGACDLEWSDIEDFHEGLI------------AIFIPDEADELCAVRLRRFKQVFADRAYM 149

Query: 185  NLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQ 242
             L  RHR  D  R  ++  LA+ H +P V TN+ L+   E    HDV+  + +  T+ + 
Sbjct: 150  ALTLRHRQNDHMRLHELSNLAFKHRVPTVVTNDVLYHIHERAMLHDVVTCIRNRCTIDTM 209

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             D      D +LK+  EM  +FSD  +A+  T+EIA R  F L       P   EK    
Sbjct: 210  GDLRHRYADRFLKSPEEMGRLFSDYRQAMARTIEIADRSRFSLAELEYQYPE--EKLMSG 267

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   E   L+  + AG + R  +G   K        + L  EL++I R+ ++ YFL V  
Sbjct: 268  MSAIEA--LKRLSWAGAKWRYPEGVPDKVI------KLLKHELDLIERLDYAPYFLTVNA 319

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +Q+A+  +I +  GRGS A S   Y L +T +DP R  LLFERF++ +R   PD D+DF
Sbjct: 320  IVQFARSKDI-LCQGRGSAANSCVCYVLGVTSVDPDRNDLLFERFISEERKEPPDIDVDF 378

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EV+++V   YG    A        + + ALRD  + L  P   +  L   I + 
Sbjct: 379  EHQRREEVMQWVFKTYGRNHAALTAVVTRFRTRGALRDTLKVLGFPEDTIKTLASSIRHW 438

Query: 483  PAHPVSLQAIAD---DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +   S +  A+   +++ R  +LA        EI   L  + R  S H  G V+    L
Sbjct: 439  HSTGFSEEDAAELNLNTKDRRLKLA-------FEIHLLLLDVPRQLSQHPGGFVLTHDRL 491

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
             +LVP+      D  V +++   I+    +K D L L  ++ ++++ D L + +G+ +D+
Sbjct: 492  DELVPIEPARMKDRQVIEWDKDDIDAVKFMKVDCLALGMMSCMKRAFDLLGEHKGIHIDM 551

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
            S IP +D +TY ++    T+G FQ+ES      L   +P    D++  V++ RPGPI  D
Sbjct: 552  SCIPPEDPKTYAMIRNADTIGTFQIESRAQMSMLPRTKPRTFYDLVIQVAIVRPGPIQGD 611

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R  G E++    P +  +L +T GV ++QEQ M++  + +G++  +AD++RRA
Sbjct: 612  MVHPYLRRLEGLEEVTFPTPELAAILGKTLGVPLFQEQAMRVVIVCAGFTAGQADLVRRA 671

Query: 717  MGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
                K    +    +  I+G   NG ++  A+ + + L  F  YGF +SHA ++A+IS  
Sbjct: 672  QATFKKTGGIGPLAQDIINGMKGNGYTEEFALTLVKQLEGFGSYGFPESHAFSFAIISEA 731

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-- 833
            +AWMK H+P  FLAA +  +        +  +DA+   +++    VN    D  +     
Sbjct: 732  SAWMKCHHPDVFLAAILNSQPMGFYAPGQLIRDAKLHGVEVRWFCVNNSRWDCSLEPTER 791

Query: 834  ------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN-RRVLESLV 886
                  R+ Y L  +KG+ +     ++    D P+ S+ D   R  +     R++  + V
Sbjct: 792  PGRFAVRLGYRL--VKGIRSQEIAEMILRRGDLPYKSVPDLWRRAKTPVATLRKLARADV 849

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
            F  A   F  SR + L S+  ++  A  +  +  ++     +       D+  ++   + 
Sbjct: 850  FEQA---FKVSRREALFSIRALRDDALPLFDSLLDETGRSLSE-----IDQPDMDFKRMT 901

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            + +   E+  +V GF    HP+   +  L++  I    E++ +     +++A MV  +Q+
Sbjct: 902  DGAEVVEDYNQV-GFTKGSHPVAFLRADLKERSIITCREAMTSKDKRYVQVAGMVNVRQR 960

Query: 1007 KKTRKG 1012
              +  G
Sbjct: 961  PGSANG 966


>gi|307086146|ref|ZP_07495259.1| putative PHP domain protein [Mycobacterium tuberculosis SUMu012]
 gi|308364390|gb|EFP53241.1| putative PHP domain protein [Mycobacterium tuberculosis SUMu012]
          Length = 716

 Score =  343 bits (880), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 231/740 (31%), Positives = 381/740 (51%), Gaps = 39/740 (5%)

Query: 43  AIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           A+A+TD + L+ A+ F++ A    ++ + G +L      +L  T + + P P  P +++L
Sbjct: 8   ALALTDHDGLYGAVRFAEAAAELDVRTVFGAEL------SLGATARTERPDPPGPHLLVL 61

Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
               EGY+RL   ++  +L    K   R     L E       +LTG   G + +A    
Sbjct: 62  ARGPEGYRRLSRQLAAAHLAGGEKGKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQG 121

Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
               A++ L      F   R+ + L  H    D  R + +  LA    + +VAT  + F 
Sbjct: 122 GPAAAQRALADLVDRFTPSRVSIELTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFA 181

Query: 221 SEEDYE-AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
                  A  +    A  ++ S           +L++  EM  +F+  PEA+    E+  
Sbjct: 182 DPSRGRLAMAMAAIRARRSLDSAAGWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGE 241

Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
           RC+F LQ+ AP LP F   +       E++ LR+  +AG   R      A   ++Q    
Sbjct: 242 RCAFGLQLIAPRLPPFDVPD----GHTEDSWLRSLVMAGARERYGPPKSAPRAYSQ---- 293

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            ++ EL VIA+++F GYFL+V D  ++ + N+I +  GRGS A S   YAL +T +DP+ 
Sbjct: 294 -IEHELKVIAQLRFPGYFLVVHDITRFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVA 351

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
             LLFERFL+P R   PD DID   D+R++VI+YV +KYG +  AQ+    + + ++A+R
Sbjct: 352 NELLFERFLSPARDGPPDIDIDIESDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVR 411

Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
           D+ RAL     Q D   K + +           ADD         D   +++++++ ++ 
Sbjct: 412 DMARALGFSPGQQDAWSKQVSH-------WTGQADD--------VDGIPEQVIDLATQIR 456

Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            L RH   H+ G+VI DRP++ + P+     ++  V Q++       GL+KFD LGL  L
Sbjct: 457 NLPRHLGIHSGGMVICDRPIADVCPVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGML 516

Query: 580 TLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
           + L  + D +A+ +G++VDL+ +   +   Y +L    ++G+FQ+ES      L  ++P 
Sbjct: 517 SALHYAKDLVAEHKGIEVDLARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPR 576

Query: 639 CIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
              D++  V+L RPGPI    V  Y  R+NG + ++  HP + P L++T GV ++QEQ+M
Sbjct: 577 VFYDLVVEVALIRPGPIQGGSVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLM 636

Query: 697 QIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLA 754
           Q+A   +G+S +EAD LRRAMG K+  E M + + RF  G  + +G    +   I+E L 
Sbjct: 637 QLAVDCAGFSAAEADQLRRAMGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLE 696

Query: 755 KFADYGFNKSHAAAYAVISY 774
            FA++GF +SHA ++A + +
Sbjct: 697 AFANFGFPESHALSFASLVF 716


>gi|167736963|ref|ZP_02409737.1| error-prone DNA polymerase [Burkholderia pseudomallei 14]
          Length = 890

 Score =  343 bits (880), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 278/927 (29%), Positives = 426/927 (45%), Gaps = 92/927 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
            R+    L       L  L G      I    +   + V + +L  F  LFG+R  + L 
Sbjct: 124 YRLTPRMLAAP-PRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLV 182

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
           Q  R  D     QV        + +VA  +            D + A+     +++    
Sbjct: 183 QLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHA 242

Query: 247 RVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            + P  + +L+ R  +  +F    +AL  T  +   C F L               DD++
Sbjct: 243 -LAPNGEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DDLR 284

Query: 305 KEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            E  +E           L  +  AG   R   G           RQR++FEL +IA +K+
Sbjct: 285 YEYPHEIVPAGHTSTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKY 338

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             YFL V D +++A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R 
Sbjct: 339 EPYFLTVYDIVKYARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERG 397

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
             PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+
Sbjct: 398 EPPDIDVDFEHQRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVE 457

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAS 526
           R+ K                D SR   AR A    DP V  +    EI+ +L    RH S
Sbjct: 458 RVAK-----------EHRWFDGSRDLLARFASVGLDPEVPLIRTWAEIAARLLNFPRHLS 506

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ 
Sbjct: 507 QHSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAF 566

Query: 587 DFL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
           D + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P  
Sbjct: 567 DMITAWRGPPLPDGRPFRLEHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRG 626

Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRK-----NGKEKIVSIHPLIDPMLKETQGVIIYQ 692
             D++  VS+ RPGPI    V  Y  R+         +I      ++ +L+ T G+ I+Q
Sbjct: 627 YYDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQ 686

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           EQVMQIA + +G++  EAD LRRAM   K K ++ K  ER ++G  + G S+  A  IFE
Sbjct: 687 EQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFE 746

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++
Sbjct: 747 QIKGFGEYGFPESHAASFAKLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKR 806

Query: 812 FNIQIMPPSVNT----------PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
             + ++P               P      G   +   L+ ++G+G   AR I  A A  P
Sbjct: 807 HGVTVLPIDATKSGWEASLEAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGP 866

Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFA 888
           F S+++   R     L RR LE+L  A
Sbjct: 867 FASVDELARRA---CLERRDLEALAAA 890


>gi|309805737|ref|ZP_07699777.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
           09V1-c]
 gi|308164990|gb|EFO67233.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
           09V1-c]
          Length = 658

 Score =  343 bits (880), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 225/666 (33%), Positives = 350/666 (52%), Gaps = 33/666 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6   LQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
           QL I+      + N+ +        ++++     GYQ ++ L S + L+ + GK+ + + 
Sbjct: 66  QLRIN-----GLINENQNF-----DLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRHR 190
           L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
               Y  S V  L+    L LVA  +  ++   D    +VL ++  +   S +D   +T 
Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLKSIDDNQ--SIRDGYELTL 231

Query: 250 ---PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               +HYLK + ++   ++ L   EAL NT ++    +  ++   P LP+FI+ + D   
Sbjct: 232 KHVGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD--- 288

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                 L + A+ GL+ +  +  I        Y  RL +EL +I  M F+ YFLIV D I
Sbjct: 289 -TSYEFLHHLAMTGLQAKFNKHDIP-----AKYLNRLKYELKIIDEMGFNDYFLIVWDVI 342

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +     I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   
Sbjct: 343 NYCHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPD 402

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           +RR+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       ++   K IP   +
Sbjct: 403 NRRNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKS 462

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V 
Sbjct: 463 KITLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVG 522

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
           + ++    +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP D
Sbjct: 523 L-QNGSLGIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLD 581

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D  T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  R
Sbjct: 582 DPATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRR 641

Query: 665 KNGKEK 670
           K  K++
Sbjct: 642 KIRKKR 647


>gi|256825424|ref|YP_003149384.1| DNA polymerase III subunit alpha [Kytococcus sedentarius DSM 20547]
 gi|256688817|gb|ACV06619.1| DNA polymerase III, alpha subunit [Kytococcus sedentarius DSM 20547]
          Length = 1260

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 232/748 (31%), Positives = 380/748 (50%), Gaps = 76/748 (10%)

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L  I ++ +  YFL VA      ++    V   RGSGAGS+  + L I+ +DPLR  LL 
Sbjct: 386  LATIEQLGYPTYFLTVARVCDLIREVGGRVA-ARGSGAGSLVNHLLGISRVDPLRHDLLM 444

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERF +P R  +PD DID    RR E+   +  ++G  RV  +    + + + A+RDVG  
Sbjct: 445  ERFCSPLRAELPDIDIDVESARRPEIYERILERFGAGRVTCVSMMETYRVRHAVRDVGAV 504

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L MP  +VD + K  P+      +  AI D    R A L  P + R+ ++ ++L+GL RH
Sbjct: 505  LGMPPVEVDAIAKAFPH-VRARDARAAIRDLPELRAAGLDAPRLQRMFDLVERLDGLPRH 563

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             + H  G+V+ +  L    P+  +     P++QF+   +E  GL+K D LG++  + +  
Sbjct: 564  IALHPCGVVLSNLGLRDRTPV-EESWIGFPMSQFDKDDVEDMGLLKLDVLGIRMQSAMAH 622

Query: 585  SLDFL-AQRGVKVDL---SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++D + +  GV++DL     +P DD ET+ L+ +  TLG FQ+ES G R+ +    P   
Sbjct: 623  TVDLVESTHGVRLDLDDEEQVPHDDAETFGLIGSTRTLGCFQIESPGQRELVGKFGPQTF 682

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            EDII  +SL+RPGP+  D I  + + + G  + + +HP ++  L+ T+GV+++ EQV+QI
Sbjct: 683  EDIIIDISLFRPGPVKSDMITPFLSARQGWAEPLLMHPALEEHLRSTEGVVVFHEQVLQI 742

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
                +G SL+ +D  RRAMG    +  D  +  +   A+  G +  +A  I+E+LA FA 
Sbjct: 743  ITATTGVSLAHSDEARRAMGS--PDGRDAVERWWRPAAAARGFTGEVADRIWEVLAAFAS 800

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            +GF K+HAAA+A+ +YQ+AW+KTHYP  F+A  +T +     K +    DAR+  ++I+ 
Sbjct: 801  FGFCKAHAAAFALPTYQSAWLKTHYPAHFMAGVLTHDPGMYPK-RLIMDDARELGVEILG 859

Query: 819  PSVNTPCVDF---KVGDNR-------------------------------IYYSLAAIKG 844
              VN     +   +V D+                                +  +L  +KG
Sbjct: 860  LDVNASGEGYRVERVADSSGPGEWPASAGPGAPDPDLALDRVRQRARQWGVRIALTEVKG 919

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS--RMQLL 902
            +G   AR I+E    +P+ SL DF  R    +++R ++E +V AGA D F     R  LL
Sbjct: 920  LGEDDARRIVEG---QPYSSLADFWQRA---QVDRPLVERMVLAGAFDAFASPARRRDLL 973

Query: 903  QSLDNIQKY-------------AQWVEKNRTNK--HENIFAHEKGT--FSDKITLEKFSV 945
              L +++++              +  E++R  +  H      E G     D   L   ++
Sbjct: 974  VELMDLERWRDPRPRGKRARLAGERAEQDRRRRAGHGTQQVLELGVPRAVDATGLPPMAL 1033

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004
            E    +  +E  VLG   + H L+ + P LR++G+    + V T+R G  + +A + V+ 
Sbjct: 1034 EE---QVAHELDVLGMDVTAHVLEPHLPTLRELGVTPARD-VRTMRSGAEVLVAGVRVAT 1089

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            Q    R G R+ +VT ++P    +A FF
Sbjct: 1090 QTPPVRSGRRVVFVTLNDPTGASDATFF 1117



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%)

Query: 8  SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          S  F HL V SS+SL  G      ++D+ AA  Q  +A+TD + L+ A+ F++    AGI
Sbjct: 9  SADFAHLHVASSFSLQYGTSRPQELVDRAAAWGQSHLALTDRDGLYGAVRFTRACVEAGI 68

Query: 68 QPIIGCQLDI 77
           P++G  L +
Sbjct: 69 VPVVGVDLAV 78


>gi|197116897|ref|YP_002137324.1| DNA polymerase III subunit alpha [Geobacter bemidjiensis Bem]
 gi|197086257|gb|ACH37528.1| DNA polymerase III, alpha subunit [Geobacter bemidjiensis Bem]
          Length = 1029

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 293/1063 (27%), Positives = 478/1063 (44%), Gaps = 116/1063 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL  HSS S   G  S   +    A+     +AITD N L+    F   A  AGI PI
Sbjct: 2    FIHLHAHSSLSPNWGVHSPETLCSHAASLGFKTLAITDRNGLYGVPRFLDAAREAGISPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--------- 121
            IG +          +T   +         VLL    EGY  +  L+S ++          
Sbjct: 62   IGTE---------AVTPDNRA--------VLLACNEEGYANISRLISDLHCQKNFDLIPA 104

Query: 122  LDQGKQSV------RICLSWLQEIGTEGLIM-LTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L + ++ +      R  L+ L+    EGL + L+ G S         N+  +A  R L  
Sbjct: 105  LSEYRRGIIVLSDDRKLLAALKRKSDEGLFVELSPGHS-------MHNALTLA--RDLRL 155

Query: 175  KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
              +   R  +   R+ G  +   S  +   ++        N       +D+  H VL A+
Sbjct: 156  PPVATSRAVLRAPRYGG--QAPPSDALTPTFSQRERGNGPNALAECRLDDFHLHRVLRAI 213

Query: 235  AHSTVVSQKDRPRVTPD------HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              +T +S     R+TP+        L    +M   F   PEAL+NT+ IA  C       
Sbjct: 214  HLNTKLS-----RLTPEMTAAESDALYPPDKMAEFFPHCPEALQNTIRIASLCKTDWNFS 268

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNV 347
            + I P F E   +             A   L  R  QGAI + G  +   + RLD EL++
Sbjct: 269  STIFPAFRELGTE------------AAFETLLERARQGAIWRYGSISDRVQARLDKELSI 316

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I    FS YFL+V +  + +++       GRGS A S+ AY L IT +DP+R +L FERF
Sbjct: 317  IRDKGFSHYFLVVEELTKQSERTC-----GRGSAAASLVAYCLGITHVDPIRHNLFFERF 371

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LN  R   PD D+DF  D RD ++ +   +YG  R A +      + ++ALR+V +   +
Sbjct: 372  LNEGRSDPPDIDVDFPWDERDAILDFAFARYGARRAAMVANQVGFKGRSALREVAKVYGL 431

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
            P  ++  + + I        S  A++    F+   L+      ++  +++L G  RH S 
Sbjct: 432  PDYEIKEMTERISGFWRAEQSAAAMSGHPLFKGESLSS-DWQEIMSTARRLNGQLRHLSL 490

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            H  G+VI    + + VP+       LP+ Q+     E AGL+K D LG ++L +++ ++ 
Sbjct: 491  HCGGLVIVPDEIRKYVPV-EISHKGLPLIQWEKDQTEDAGLVKIDILGNRSLAVIRDAMA 549

Query: 588  FLA-QRGVKVDLSLI-PFDDHETYHLLTTKGTLGIFQLESSGMRQAL----------EGM 635
             +  Q+GV++D +   P +D  T  LL    T+G F LES  +R  L          E  
Sbjct: 550  AVKEQKGVEIDYATWRPLEDERTQSLLRRGLTIGCFYLESPSVRLLLRKIWSSTAPPETF 609

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            + D  E ++   S+ RP     I  Y  R  GK     +HPL++ +L ET G+ IYQEQ+
Sbjct: 610  RYDLFEVLVQASSIIRPAANSFIQEYVARLQGK-PWSHLHPLLESVLGETLGIAIYQEQI 668

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEE-MDKQKERFISGASKNGISKTIAVNIFELLA 754
             QIA  L+G+S SE D LR+ + KK +E+ +   + +F++G ++ G+ + + + I++ + 
Sbjct: 669  TQIAMELAGFSASEGDQLRKVITKKHREKRLADFRNKFMAGGAERGVPEKVLLGIWDQIL 728

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y F K H+A+YA++S + A+MK H+P +F+AA ++ +         +  + R+  +
Sbjct: 729  SFAGYSFCKPHSASYALLSGKAAYMKAHHPAQFIAAVISNQGGYYSPF-AYISEGRRLGL 787

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873
             I+PP +N     +   +  +   L  I G+    A  +++   ++  F S ++F  R  
Sbjct: 788  AILPPDINESEYHYTGKEKTLRVGLMQIDGLTRDGADRLLKERRERGAFASFKEFLRRA- 846

Query: 874  SKKLNRRVLESLVFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
              +L R   E L+ AG  D       R  LL  L + Q+ A  +                
Sbjct: 847  --RLQRADAERLIKAGCFDALEGEEKRPTLLWELLHFQQQATAL---------------- 888

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL-RKMGIKGYEESVATI 990
              F  K  L      ++ +    E   LGF  S HPL +YK    R   IK  E    T 
Sbjct: 889  -LFEQKTELPHPPPYDAQLVLRQEVEALGFLVSRHPLALYKEQWQRHRPIKASELIKHT- 946

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G  + +    ++ +  + + G  + +++F +    ++A FFP
Sbjct: 947  -GKWVTMVGWWITTKTVEDKHGRPMEFISFEDVTAIFDATFFP 988


>gi|327188040|gb|EGE55268.1| DNA polymerase III, alpha chain [Rhizobium etli CNPAF512]
          Length = 1084

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 286/1026 (27%), Positives = 466/1026 (45%), Gaps = 86/1026 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  LQV + +S L GA S   + +        A+ + D N+L   +   + + A G++ 
Sbjct: 2    SYAELQVTTHFSFLRGASSAQELFETAKQLGIEALGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+LD  + D +              S+++       Y RL  L++    L + +   
Sbjct: 62   VVGCRLD--LADGM--------------SVLVYPMDRSAYSRLTRLIT----LGKSRGGK 101

Query: 130  RIC-LSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              C L W   +  +EG+I +      P D         +   +L    +LFGDR YV+L 
Sbjct: 102  NNCILHWDDIVAYSEGMIGILV-PDLPDD---------LCAIQLRKMAELFGDRAYVSLC 151

Query: 188  -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK--D 244
             R R  D+ R  ++  +A   ++  V TN+ LF      +  D++  + H+T +     +
Sbjct: 152  LRRRPNDQLRLHEISNMAARFKVRTVVTNDVLFHEPGRRQLQDIVTCIRHNTTIDDVGFE 211

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R   D YLK   EM  +F    +AL  T+EI  RC F L+      P    +E     
Sbjct: 212  RER-HADRYLKPPEEMARLFPRYAQALARTLEIVHRCKFSLEELTYQYP----EEAIVPG 266

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K+ +  L +        R  +G         D  + +  EL++I  MK++ YFL V   +
Sbjct: 267  KDAQASLEHYVWECAPDRYPEGL------PPDVLKTVRHELDLIRTMKYAPYFLTVFSIV 320

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  
Sbjct: 321  RFARSQGI-LCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEH 379

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI+++   Y  E+ A   T    +AK A+RDVG+AL +P   +  L   +     
Sbjct: 380  ERREEVIQWIYKTYTKEKAALCATVTRYRAKGAIRDVGKALGLPEDVIKALSSGM----- 434

Query: 485  HPVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
               S      D   RE  L +P   RL   L+++Q+L G  RH   H  G V+    L  
Sbjct: 435  --WSWSEEIPDRNIRELNL-NPDDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDD 491

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            LVP+      D  + +++   +E    +K D L L  LT + K+ D + + +G  +DLS 
Sbjct: 492  LVPIEPATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMAKAFDLIREHKGQDLDLSK 551

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            I  +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 552  ISQEDAATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMV 611

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R+ GKE +    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M 
Sbjct: 612  HPYLRRREGKEPVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMA 671

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K    + + K++ +SG  KNG S   A   F  L  F  YGF +SHAA++A+I+Y + 
Sbjct: 672  TFKFTGGVSRFKDKLVSGMVKNGYSAEFAEKTFSQLEGFGSYGFPESHAASFALIAYASN 731

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVDFKVGD-- 832
            ++K H P  F AA +  +        +   DA +  +++ P  VN     C   ++G   
Sbjct: 732  YIKCHCPDVFCAALLNSQPMGFYAPAQIVGDAIKHGVEVRPVCVNRSRWDCTLERIGGSD 791

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             + +      +KG+    A  I+ A  + PF S++D   R           E+LV     
Sbjct: 792  RHAVRLGFRQVKGLAVADAARIVAARMNNPFASVDDMWRRSSVPT------EALVQLAEA 845

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK-----FSVE 946
            D F       L SL   ++ A W  K   ++   +FA      +  I  ++         
Sbjct: 846  DAF-------LPSLKLERRDALWAIKALRDEPLPLFAAAAEREATAIAEQQEPEVALRQM 898

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            N       +   +G     HP+   +  L    I    E++    G  +  A +V+ +Q+
Sbjct: 899  NDGHNVIEDYSHIGLTLRQHPVAFLRKGLSVRNIITCAEAMNARDGRWVYTAGLVLVRQK 958

Query: 1007 KKTRKG 1012
              + KG
Sbjct: 959  PGSAKG 964


>gi|119475666|ref|ZP_01616019.1| DNA polymerase III, alpha subunit [marine gamma proteobacterium
            HTCC2143]
 gi|119451869|gb|EAW33102.1| DNA polymerase III, alpha subunit [marine gamma proteobacterium
            HTCC2143]
          Length = 1044

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 279/1034 (26%), Positives = 487/1034 (47%), Gaps = 108/1034 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA     ++ + A     A+ I+D  +    +     A +  I+
Sbjct: 6    PDYAELHCISNFTFLRGASHPEELVTQAAELGYRAVTISDECSFAGIVRAHMAAKSCNIK 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG +  ++  +N+++              +LL +    Y ++  L+S+  L    K S
Sbjct: 66   LIIGSEFYLN--ENIRL--------------LLLATDKTAYSQISSLISKARL-RSPKGS 108

Query: 129  VRICLSWLQEIGTEGL-IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY--VN 185
              I L   Q      L I L   +      A    + ++AE+     K +F   L+  +N
Sbjct: 109  YEISLKDFQRESPHYLAIWLVNDALTDEQEA----NQKIAEQ----LKSVFQQSLWMGIN 160

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KD 244
            L R + + + R  Q  ++A  + +P+ A+ N            DV+ A+  +T + +  +
Sbjct: 161  LPR-KSHQQQRYLQCYEIAKRYHIPMTASGNVHMHVAARKPLQDVVTAIRLNTNIQRLGN 219

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-----QVHAPILP------ 293
            + +   + +L +R ++ S++   PE L  T++IA RC F L     Q    I+P      
Sbjct: 220  KLQANAELHLHSRKQLASLYP--PELLAETLQIAARCQFTLDSLNYQYPDEIVPPNTTAT 277

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            +F+ +  +D  ++   +   + V  L                     ++ EL +I  MK+
Sbjct: 278  QFLRELTEDGARQRWPDHIPETVISL---------------------IEKELALIHEMKY 316

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL V D +Q+A+   I +  GRGS A S   Y L IT++DP R  LLFERF++ +R 
Sbjct: 317  EQYFLTVYDIVQFARNQKI-LCQGRGSAANSAVCYCLFITEVDPARSQLLFERFISKERD 375

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D+DF  +RR+EV++Y+  KYG ER A   T  + + ++A+RDVG+AL    + VD
Sbjct: 376  EPPDIDVDFEHERREEVMQYIYRKYGRERAALAATVITYRPRSAVRDVGKALGFDQALVD 435

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            +L K + +    P  L  + + ++ ++  +   S    L++  ++    RH S H  G +
Sbjct: 436  KLAKSL-SWWKKPQQLDELLNRAQVQQRSI---SAQLFLQLVDEILRFPRHLSQHVGGFI 491

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL----DFL 589
            I   P+S LVP+      +  + Q++   IE  GL+K D L L  L+ ++KSL    DF 
Sbjct: 492  ICREPISMLVPLENAAMKNRTIIQWDKTDIESLGLMKIDVLALGMLSAIRKSLGYISDFE 551

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
               G +  L  IP +D  TY +L    T+G+FQ+ES      L  ++P    D++  +++
Sbjct: 552  ETNGKEFQLDNIPAEDKATYDMLCKADTIGVFQIESRAQMNMLPRLRPQTFYDLVIQIAI 611

Query: 650  YRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             RPGPI   +V+    R+ G E I   +  ++ +L  T GV I+QEQV+Q+A + +G+S 
Sbjct: 612  IRPGPIQGGMVHPFLRRRQGLESITYANAGLEAVLGRTLGVPIFQEQVIQLAMVAAGFSG 671

Query: 708  SEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             EAD LRRA+    +   +D  +++ I+G  + G S   A  +F  L  F  YGF +SH+
Sbjct: 672  GEADQLRRAITSWGRNGHLDLFRDKLINGMLERGYSIDFADRLFNQLRGFGAYGFPESHS 731

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A++A+++Y ++W+K ++P  F    +  +        +  QDAR+  +QI+P  +N    
Sbjct: 732  ASFALLAYASSWIKCNHPGAFYCGLLNSQPMGFYAPAQLVQDARRHGVQILPVCINHSQW 791

Query: 827  DFKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            D  +    +       +KG+   +A  ++ A AD+ F S+ DF  R     +NR+    L
Sbjct: 792  DHCLMTRHVLRLGFRLLKGMHRKSAERLVTARADRSFSSMADFIQRT---HINRQEQNCL 848

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQW----VEKNRTNKHENIFAHEKGTFSDKITLE 941
            V + A  CF   R Q           +QW    VE++R      +F  E     D   + 
Sbjct: 849  VRSDAFQCFNSHRYQ-----------SQWQISAVEESRP-----LFNVESDAVLDDHIVL 892

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKP--ILRKMGIKGYEESVATI-RGNNIRLA 998
                E+  ++++      G     HP+ + +   +L +         +ATI  G+ + +A
Sbjct: 893  AAPKEHEEIQWDYS--YTGLTLRRHPMALLRENQLLHRC---TRATDLATIEHGHIVHIA 947

Query: 999  AMVVSKQQKKTRKG 1012
             +V  +Q+  T  G
Sbjct: 948  GLVTCRQRPGTATG 961


>gi|254282771|ref|ZP_04957739.1| DNA polymerase III, alpha subunit subfamily, putative [gamma
            proteobacterium NOR51-B]
 gi|219678974|gb|EED35323.1| DNA polymerase III, alpha subunit subfamily, putative [gamma
            proteobacterium NOR51-B]
          Length = 1028

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 296/1042 (28%), Positives = 479/1042 (45%), Gaps = 127/1042 (12%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L   S++S L GA     ++++ A     A+AITD  +L  A++    A A GIQ 
Sbjct: 2    SYAELHCLSNFSFLRGASHPAELVERAAHCGYSALAITDECSLGGAVKAHVAAKACGIQL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQS 128
            I+G + ++         N+G         +V L      Y  L  L+SR      +G+ S
Sbjct: 62   IVGSEFNL---------NEGI-------RLVALAPDRAAYAELSGLISRSRRRSAKGEYS 105

Query: 129  V----------RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
                       R  + WL                 P D     +  Q A  + L+ +  F
Sbjct: 106  TSLRDVIFHLKRCLIIWL-----------------PTD-----DEEQSAYGKQLSSR--F 141

Query: 179  GDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
              RL++ + R  G D  R  +   Q A    LP+VA  +           HDVL A+ ++
Sbjct: 142  SGRLWIGVSRLLGNDEIRRFRARYQFARELALPMVACGDVQMHCAARKPLHDVLTALRYN 201

Query: 238  TVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
            T V Q  + R V    +L++   ++ ++   P   + T+ IA RC F L       P   
Sbjct: 202  TSVQQLGQRRLVNSQQHLRSLDRLLPLYP--PSLTDETLAIAARCHFSLDELRYEYP--- 256

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
             +E     +   + LR +   G   R   G         D   R+  EL++I  + +  Y
Sbjct: 257  -EEVIPAGETANSYLRRQVALGAHARWPDGVPG------DIEDRIHRELDLITELNYEYY 309

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D +++A++ +I +  GRGS A SV  Y L IT++ P + SLLFERF++ +R   P
Sbjct: 310  FLTVYDIVRFARERDI-LCQGRGSAANSVVCYCLAITEVSPEQISLLFERFISRERDEPP 368

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  +RR+EVI+Y+  KY   R A   T+ + ++++A+RD+G+AL +    VD L 
Sbjct: 369  DIDVDFEHERREEVIQYIYQKYSRRRAALAATYITYRSRSAVRDIGKALGLDPIFVDDLA 428

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-------LLEISQKLEGLYRHASTHA 529
            K +           A  +  R   +R A   +          L + Q++ G  RH S H 
Sbjct: 429  KSL-----------AWWNRERELSSRFAKHGITAAGRQAHLFLNLVQEILGFPRHLSQHV 477

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G VI   PLS LVP+         V Q++ + IE  GL+K D L L  L+ ++KSLD+L
Sbjct: 478  GGFVISRGPLSHLVPIENAAMDSRTVIQWDKEDIESLGLLKVDILALGMLSAIRKSLDWL 537

Query: 590  AQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q    +  +  IP +D  TY +L    +LG+FQ+ES      L  ++P C  D++  ++
Sbjct: 538  HQYHPSIRSIQDIPKEDQATYQMLQRGDSLGVFQIESRAQMSMLPRLKPACFYDLVIEIA 597

Query: 649  LYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            + RPGPI  D +  Y  R+NG E I      I  +L+ T GV I+QEQV+++A + +G++
Sbjct: 598  IVRPGPIQGDMVHPYLRRRNGLEPISYPSEDIRSVLESTLGVPIFQEQVIRLAMVAAGFT 657

Query: 707  LSEADVLRRAM---GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
              EAD LRRA+   G+  K    +QK     G    G S   A  +F+ +  F  YGF +
Sbjct: 658  GGEADALRRAITNWGRDSKLLTFEQK--LTEGMISRGYSPQFARQLFDQIKGFGGYGFPE 715

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+A++A+++Y +AW++ H+P  F    +  +        +  Q AR+  + ++P ++N 
Sbjct: 716  SHSASFALLAYVSAWLRRHHPAAFYLGLLNSQPMGFYTPSQLIQSARRQGVVVLPIAINH 775

Query: 824  PCVDFKV---GDNR---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
               D ++   G+ +   +   L  +KG+    A  I+     + F  + D   R    +L
Sbjct: 776  SQWDHQLLPPGNGQAPPLRLGLRLVKGLSQAGAERIVAQREQRLFAHVGDLRRRA---RL 832

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW----VEKNRTNKHENIFAHEKGT 933
            ++R +E+L  A A           LQ+L   +  +QW    +E +    H+     E  T
Sbjct: 833  DKRDMEALANADA-----------LQNLSGNRHQSQWQIMALEPDSQLLHQTTSTTE--T 879

Query: 934  FSDKITLEKFS-VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
            + D I L   S VEN    +       G     HPL + +P  +    +   +S     G
Sbjct: 880  WDDDIHLPAPSTVENVLADYN----ATGLTLRSHPLALLRP--QSPFDRCRRQSELASLG 933

Query: 993  NN--IRLAAMVVSKQQKKTRKG 1012
            N+  +R+A +V  +Q+  T  G
Sbjct: 934  NHRFVRIAGIVTCRQRPGTASG 955


>gi|325001990|ref|ZP_08123102.1| error-prone DNA polymerase [Pseudonocardia sp. P1]
          Length = 886

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 229/668 (34%), Positives = 346/668 (51%), Gaps = 39/668 (5%)

Query: 253 YLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
           +L++  EM   F D  P A+     + R  +F L + AP LP F   E +     E + L
Sbjct: 72  HLRSGREMTRRFEDRHPGAVARAAGLGRELAFELHLVAPDLPPFDVPEGE----TEASWL 127

Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
           R     G   RL +     G H ++      ++ EL +I    F GYFLIV D + + ++
Sbjct: 128 RALTERG---RLQR----YGSHDENPFAAYTVERELAIIEEKNFPGYFLIVHDIVDFCRR 180

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            +I    GRGS A S   YAL IT++D +R  LLFERFL+PDR   PD D+D    RR+E
Sbjct: 181 EDI-FCQGRGSAANSAVCYALGITNVDAVRHGLLFERFLSPDRDGYPDIDLDIESGRREE 239

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            I+YV  +YG    AQ+    + + ++A+RD  RAL     Q D   K +  +  H +  
Sbjct: 240 AIQYVYRRYGRLFAAQVANVITYRPRSAVRDTARALGFSPGQQDAWSKRV--ERWHALEA 297

Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             +       E  L  P +  LL+++ +L G  RH   H+ G+VI DRP+S++VP+    
Sbjct: 298 SELGTGG---EQTLQMPPL--LLDLAGQLMGAPRHLGIHSGGMVICDRPVSEVVPVEWAR 352

Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET 608
             D  V Q++ +    AGL+KFD LGL  LT L    D + +  G +++L  I   D E 
Sbjct: 353 MEDRTVVQWDKEDCAAAGLVKFDLLGLGMLTALHLMADLVERNDGTRIELHRIGESDPEV 412

Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKN 666
           Y +L+   ++G+FQ+ES      L  ++P    D++  V+L RPGPI    V  Y  R+N
Sbjct: 413 YAMLSRADSVGVFQVESRAQMATLPRLRPREFYDLVVEVALIRPGPIQGGSVHPYIRRRN 472

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEM 725
             +     HPL+ P L +T G+ ++QEQ+MQIA  ++G+S +EAD LRRAMG K+  E+M
Sbjct: 473 RIDDWEHDHPLLKPALDKTLGIPLFQEQMMQIAVDVAGFSAAEADELRRAMGAKRSTEKM 532

Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
           ++ + RF  G + NGI+  +A  IF  +  FA++GF +SH+ ++A + Y +AW K ++P 
Sbjct: 533 ERLRGRFFDGMAANGITGELAETIFTKMLAFANFGFPESHSISFAALVYYSAWFKLYHPA 592

Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-------KVGDNRIYYS 838
            F AA +  +       +    DAR+  +++  P VN    D          G   +   
Sbjct: 593 AFCAALLNAQPMGFYSPQSLVADARRHGVRVRRPDVNEGRADAILQPDPDSTGGWAVRLG 652

Query: 839 LAAIKGVGTTTARHI--MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
           L+ I+ +GT  A  +  + ASA  PF  L D   RV   +L     E+L  AGA  CFG 
Sbjct: 653 LSGIRTIGTDLAGAVDAVRASA-GPFADLPDLARRV---RLTGPQAEALATAGAFGCFGV 708

Query: 897 SRMQLLQS 904
            R + L +
Sbjct: 709 ERREALWA 716


>gi|226327032|ref|ZP_03802550.1| hypothetical protein PROPEN_00893 [Proteus penneri ATCC 35198]
 gi|225204250|gb|EEG86604.1| hypothetical protein PROPEN_00893 [Proteus penneri ATCC 35198]
          Length = 588

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 191/466 (40%), Positives = 275/466 (59%), Gaps = 26/466 (5%)

Query: 582  LQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            L+KSL+        VD+S I   D  ++ +L    T  +FQLES GM+  ++ ++PDC E
Sbjct: 5    LKKSLE-------PVDISAISLTDQRSFDMLQRSETTAVFQLESRGMKDLIKRLRPDCFE 57

Query: 642  DIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQ 694
            D+IALV+L+RPGP+ + +V N  +RK+G E+I        H  + P+L+ T GVI+YQEQ
Sbjct: 58   DMIALVALFRPGPLQSGMVDNFIDRKHGVEEISYPDVKWQHESLQPVLEPTYGVILYQEQ 117

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ 
Sbjct: 118  VMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAIKNGVDGELAMKIFDLVE 177

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
            KFA YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  +
Sbjct: 178  KFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGL 237

Query: 815  QIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRV 872
            +++PP +N+    F V D   I Y + AIKGVG      I+EA      F  + D C+R 
Sbjct: 238  KVLPPDINSGLYHFHVNDEGEIVYGIGAIKGVGEGPIEAIVEARQQGGHFKDIFDLCART 297

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            ++KKLNRRV+E L+ +GA D  G  R  L+ SL++  K A    K       ++F    G
Sbjct: 298  ETKKLNRRVMEKLIMSGAFDKLGPHRAALMSSLEDALKAADQHAKAEAIGQSDMF----G 353

Query: 933  TFSDKITLEKFSVEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEES 986
              ++     + S  N       V  E E+  LG Y +GHP+  Y K I R       ++ 
Sbjct: 354  VLAEAPEQVERSYANIPKWPDQVVLEGERETLGLYLTGHPITRYLKEIERYAAGTRLKDL 413

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V T RG  +++A +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 414  VPTPRGQMVKVAGLVLASKVFTTKRGNRIGVCTLDDRSGRLEIMLF 459


>gi|322421354|ref|YP_004200577.1| DNA polymerase III subunit alpha [Geobacter sp. M18]
 gi|320127741|gb|ADW15301.1| DNA polymerase III, alpha subunit [Geobacter sp. M18]
          Length = 1032

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 303/1083 (27%), Positives = 479/1083 (44%), Gaps = 153/1083 (14%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHSS S   G  S   +  + A      +AITD N L+    F   A  AGI PI
Sbjct: 2    FVHLHVHSSLSPNWGVHSPEALCSEAARLGFDTLAITDRNGLYGVPRFLDAAREAGISPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +          +T Q +         VLL    EGY  +  L+S ++          
Sbjct: 62   IGTE---------AVTEQNRA--------VLLAVDREGYANISRLLSDLHCSKN------ 98

Query: 131  ICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQ 187
                 +Q +     G+I+L+                   ++RLL+  K   D+ L+V L 
Sbjct: 99   --FDLIQALAQYRRGVIVLSD------------------DRRLLSVLKRESDQGLFVELS 138

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE------------------------- 222
               G+D +R    + L+    +P VAT  +L L                           
Sbjct: 139  P--GHDMHR---ALALSRDLRIPPVATARALMLDRSALTPPLSRRERGDVDTPRQEREYV 193

Query: 223  -----------EDYEAHDVLMAVAHSTVVSQKDRPRVTP--DHYLKNRSEMVSIFSDLPE 269
                       +D+  H VL A+  +T +S+   P +T      L     M   F   PE
Sbjct: 194  DAHLRRDKDVLDDFHLHRVLRAIHLNTKLSRLA-PELTACESDLLYPPLRMSDFFPHCPE 252

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            ALENT  IA  C       + I P F     DD            A A L  R   GA+ 
Sbjct: 253  ALENTRRIAGMCRGEWDFSSTIFPAFRGLGNDD------------AFATLSARARAGALW 300

Query: 330  KGYHAQDYR--QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
            + Y + D +   RL+ EL +I    F+ YFL+V +  + +++       GRGS A S+ A
Sbjct: 301  R-YGSIDAKVEARLEKELTIIRDKGFAHYFLVVEEITKQSQRTC-----GRGSAAASLVA 354

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            Y L IT +DP+R +L FERFLN  R   PD D+DF  D RD ++ +   +YG  R A + 
Sbjct: 355  YCLGITHVDPIRHNLFFERFLNEGRSDPPDIDVDFPWDERDAILDFAFARYGARRAAMVA 414

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
                 + ++ALR+V +   +P  ++  +   I        S  A+A    FR   L+   
Sbjct: 415  NQVGFKGRSALREVAKVYGLPDFEIKEMTDRISGFWHAEQSAAAMAGHPLFRGEALSR-D 473

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
               +L  +++L G  RH S H  G+VI    + + VP+    +  LP+ Q+     E AG
Sbjct: 474  WQEILATARRLNGQLRHLSLHCGGLVIVPDEIRRYVPVEISHKG-LPLIQWEKDQTEDAG 532

Query: 568  LIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDL-SLIPFDDHETYHLLTTKGTLGIFQLES 625
            L+K D LG ++L +++ +L  +  Q+G+++D  S  P +D  T  L+    T+G F LES
Sbjct: 533  LVKIDILGNRSLAVIRDALAAVKEQKGMEIDYASWRPLEDERTQSLMRRGLTIGCFYLES 592

Query: 626  SGMRQAL----------EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
              +R  L          E    D  E ++   S+ RP     I  Y  R  GK K   +H
Sbjct: 593  PSVRLLLRKIWSSTAPPETFDSDLFEVLVQASSIIRPAANSFIQEYVARMQGK-KWSHLH 651

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE-MDKQKERFIS 734
            PL++ +L ET G+ IYQEQ+ QIA  L+G+S SE D LR+ + KK +E+ +     +FI+
Sbjct: 652  PLLESVLGETLGIAIYQEQITQIAMELAGFSASEGDQLRKVITKKHREKRLADFHAKFIA 711

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            G  + G+   +  +I+E +  FA Y F K H+A+YA++S + A+MK ++P +F+AA ++ 
Sbjct: 712  GGKERGVPGEVLDSIWEQILSFAGYSFCKPHSASYALLSAKAAYMKANHPAQFMAAVISN 771

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
            +         +  + R+  + I+PP +N     +K  +  +   L  I G+    A+ ++
Sbjct: 772  QGGYYSPF-AYISEGRRLGLTILPPDINESDYHYKGFEKSLRVGLMQIDGLTREGAKRLL 830

Query: 855  EASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF--GYSRMQLLQSLDNIQKY 911
            +   ++ PF S +DF  R   ++ +    E LV AG  D       R  LL  L + Q+ 
Sbjct: 831  KERKERGPFGSFQDFLRRAGVQRAD---AERLVKAGCFDPLEGEQRRPALLWELLHFQQQ 887

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            A  +                  F  +  L +    ++      E   LGF  S HPL +Y
Sbjct: 888  ATAL-----------------LFEQQTELPQAPPYDAETVLRQEVETLGFLVSRHPLALY 930

Query: 972  KPIL-RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            K    R   IK  E  +    G  + +    ++ +  + + G  + +++F +    ++A 
Sbjct: 931  KAQWQRHRPIKAAE--LIRHSGKWVTMVGWWITTKTVEDKHGRPMEFISFEDVTAIFDAT 988

Query: 1031 FFP 1033
            FFP
Sbjct: 989  FFP 991


>gi|209515641|ref|ZP_03264505.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160]
 gi|209503877|gb|EEA03869.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160]
          Length = 1049

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 283/1035 (27%), Positives = 475/1035 (45%), Gaps = 98/1035 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S+++ L GA     +  + A     A+AITD  +L   +     A  A + 
Sbjct: 9    PAYAELFCFSNFTFLRGASHAEELAGRAAQLGYSALAITDECSLAGVVRAHVAAKEAKLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G           ++ N   +P      ++LL     GY  L EL++ +  +   K  
Sbjct: 69   FIVGSYF--------RLVNADGSP---AFGLILLARNRNGYGNLSELIT-LARMRAPKGE 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L         +L       I    F  S    + ++      F  R +V L  
Sbjct: 117  YRLTPQDLSRPEKAYRHLLGMPDCLAILVPDFPASEDALDAQVEWLDATFTGRAWVGLVL 176

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H R  D      V  +A + ++P+VA    +          D + A+     V +     
Sbjct: 177  HQRAMDDMHRGAVEFVARSRDVPVVALGEVVMHVRSRKPLQDTMTAIRVGKPVHECGY-D 235

Query: 248  VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            + P  + +L++R  + +++    +AL  T++I  RC+F L               D+++ 
Sbjct: 236  LAPNAEQHLRSRLRLANLYPQ--DALAATLDITSRCTFSL---------------DELRY 278

Query: 306  EEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            E  +EL           R +   G + R   G     +H Q   Q+++ EL +IA +++ 
Sbjct: 279  EYPDELVPAGHTPASYLRQETYIGAQRRFPSGI---PHHVQ---QQIEHELELIADLQYE 332

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFL V D +++A+  +I +  GRGS A S   Y L +T++DP R ++LFERF++ +R  
Sbjct: 333  PYFLTVYDIVRFARSQHI-LCQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGE 391

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+Y+  KYG +R A      + + + ALR+ G+AL +    VD 
Sbjct: 392  PPDIDVDFEHQRREEVIQYIYRKYGRDRAAIAAAVSTYRPRGALRETGKALGVDPLIVDA 451

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            + K      +H          +RF E+ L    P +    +++ +L    RH S H+ G 
Sbjct: 452  VAK------SHHWFDGRQDLLARFAESGLDPDKPLIQAWAKLASQLLNFPRHLSQHSGGF 505

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-Q 591
            VI    L++LVP+      D  V +++   +E  GL+K D L L  L+ ++++LD ++ Q
Sbjct: 506  VISRGKLTRLVPVENAAMVDRSVIEWDKDDLESLGLLKVDVLALGMLSAIRRTLDLVSEQ 565

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            RG + ++  IP +D  TY +++   T+G+FQ+ES      L  M+P    D++  V++ R
Sbjct: 566  RGERFEMQDIPAEDEATYAMISAADTVGVFQIESRAQMSMLPRMRPTEFYDLVIEVAIVR 625

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGPI    V  Y  R+ G E +      +   L  T GV I+QEQVMQ+A L +G++  E
Sbjct: 626  PGPIQGGAVHPYLQRRQGFEPVTYPSDALKTALGRTLGVPIFQEQVMQVAILAAGFTAGE 685

Query: 710  ADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD LRRAM   K K  ++K  +R + G  + G ++  A  IFE +  F +YGF +SHAA+
Sbjct: 686  ADQLRRAMAAWKRKGGLEKYYDRIVLGMQERGYTQAFAEAIFEQIKGFGEYGFPESHAAS 745

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +A++ Y ++W+K H P  FLAA +  +        +  QDA++  ++++P  V     D 
Sbjct: 746  FALLVYASSWLKCHEPEAFLAAMLNSQPMGFYSPSQLVQDAKRHGVKVLPVDVTVSGWDS 805

Query: 829  KVGDN------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
             +  N       +   L+ ++G+    A  I  A A +PF S+ D   R    +L+R+ L
Sbjct: 806  SLEPNAGTPRPAVRLGLSLLRGMKDGAAERIENARAVRPFASVNDLARRA---QLDRKDL 862

Query: 883  ESLVFAGALDCF-GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
             +L  A AL    G  R  L QS+  +            ++   + A  +   +D I   
Sbjct: 863  HALAQANALTSLAGNRREALWQSVVAVPDKDMLAAAAAQDETPELGAPSE---ADDIV-- 917

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR----GNNIRL 997
                         + R LG   + HPL++ +P L    +       +T+R    G   R 
Sbjct: 918  ------------ADYRSLGLTLNRHPLELLRPQL----LANRLMPASTLRTYRDGRLARA 961

Query: 998  AAMVVSKQQKKTRKG 1012
              +V  +Q+  T KG
Sbjct: 962  CGLVTVRQRPGTAKG 976


>gi|332107597|gb|EGJ08821.1| DNA polymerase III subunit alpha [Rubrivivax benzoatilyticus JA2]
          Length = 1057

 Score =  342 bits (876), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 254/833 (30%), Positives = 400/833 (48%), Gaps = 65/833 (7%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA     ++ +       A+AITD  +L   +    +A   G++
Sbjct: 6   PPYAELHCRSNFSFLVGASHPEELVARAHVLGYAALAITDEGSLAGVVRAHAEAERLGLK 65

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I+G ++        ++    +TP    P +VLL  T  GY  L   ++    + + + +
Sbjct: 66  LIVGAEM--------RLAPPPETPDADEPRLVLLAQTRRGYGNLAHWIT----VARRRAA 113

Query: 129 VRICLSWLQEI-----------GTEGLI-MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
               L+W  ++           G  G I +L   ++ P++  F   S           K 
Sbjct: 114 KGEYLAWRSDLEGAVPTAPFLAGLPGCIALLLPDAAQPLETVFAHAS---------WLKT 164

Query: 177 LFG-DRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            FG +R  V L+  H   D      V ++A    LP+VA    L  +       DVL A 
Sbjct: 165 WFGPERAAVALELLHHAGDADLVDTVTRVAAQAGLPVVAAGGVLMHTRSRKPLLDVLAAT 224

Query: 235 AHSTVVSQKD---RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
                V++      P    + +L+ R+ + +++   PE L  T+ +A RCSF L      
Sbjct: 225 RLKRPVAECGFDLEPNA--EAHLRPRARLAALYR--PEWLAATLAVAERCSFTLAELKYE 280

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            PR    E         + LR    +G   R   G  A        R +++ EL +IAR+
Sbjct: 281 YPR----EIVPAGHTPTSWLRELTESGARRRFPAGVPAA------VRAQIEHELALIARL 330

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            +  YFL VAD + WA+  +I +  GRGS A S   Y L +T +DP + +LLFERF++ +
Sbjct: 331 GYEPYFLTVADIVHWARDQDI-LCQGRGSAANSAVCYCLEVTAVDPSKSTLLFERFISEE 389

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R   PD DIDF   RR+EVI+YV  +YG  R A      S + ++ALRDVGRAL +   +
Sbjct: 390 RNEPPDIDIDFEHQRREEVIQYVYQRYGRHRAALTAVVISYRPRSALRDVGRALGLDLDR 449

Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHA 529
           ++ + +         +      D  R RE  L  A P     +E++++L G  RH S H 
Sbjct: 450 IESVARGQQWFDGRRI------DPERLREQGLDPAAPLCRLWVELTEQLIGFPRHLSQHP 503

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G VI    LSQLVP+      D  V Q++   ++  GL+K D L L  L+ ++++LDF+
Sbjct: 504 GGFVIARDELSQLVPVENAAMEDRSVVQWDKDDLDALGLMKVDLLALGMLSAIRRALDFV 563

Query: 590 -AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            A+RG  + L  IP D+   Y +L+   ++G+FQ+ES      L  ++P+   D++  V+
Sbjct: 564 GAKRGAPLALHQIPQDEKPVYDMLSAGDSIGVFQVESRAQMSMLPRLRPEKFYDLVIEVA 623

Query: 649 LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
           + RPGPI   +V  Y  R+ G+E +      +   L+ T GV I+QEQVMQ+A L + ++
Sbjct: 624 IVRPGPIQGGMVHPYLKRRCGEEPVDYPSAEVKQALERTLGVPIFQEQVMQLAILAADFT 683

Query: 707 LSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
             EAD LRRAM   K K  +    ER +      G +   A  IF+ +  F +YGF +SH
Sbjct: 684 PGEADRLRRAMAAWKRKGGLGPFHERLVGRMVAKGYTAEFAERIFKQIEGFGEYGFPESH 743

Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           AA++A + Y +AW+K H+P  FLAA +           +  +DAR+  + + P
Sbjct: 744 AASFAQLVYASAWLKRHHPDAFLAALLNSLPMGFYAPAQLVRDAREHGVVVRP 796


>gi|162450012|ref|YP_001612379.1| DNA polymerase III, alpha subunit [Sorangium cellulosum 'So ce 56']
 gi|161160594|emb|CAN91899.1| DNA polymerase III, alpha subunit [Sorangium cellulosum 'So ce 56']
          Length = 1108

 Score =  342 bits (876), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 298/1094 (27%), Positives = 481/1094 (43%), Gaps = 149/1094 (13%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L   S +S LEGA     ++ +        +A+ D + ++ ++     A     + I
Sbjct: 9    FVELCGRSCFSFLEGASHPEELVHRAKELGLEGLALCDRDGIYGSVRAHTAAKKVEQRVI 68

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTV-PSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQS 128
            +G +L       L     G    P V PS+VLLV  +EGY  L  L++  +   ++G  S
Sbjct: 69   VGAEL------TLGAPRGGAERAPEVRPSVVLLVEDSEGYANLCRLLTIAHAECEKGMAS 122

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            +        + G   ++        P+D       + V+   L T +  FG+R  V   +
Sbjct: 123  ISAEAIAAAQRGLSAIV--------PLDP---LVPAGVSGALLGTLRDAFGERALVATWK 171

Query: 189  HRGYDRYRESQVVQLAYT----HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            H   DR R+ + V  A      H   +VAT   L+         DVL  +   T + Q  
Sbjct: 172  H--LDR-RDGERVAAALAAERRHGPCVVATARPLYHHPSRKPLADVLACIRTKTTLDQAG 228

Query: 245  RPRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              R+ P  + Y+++ ++M ++F D P  +  TVE+A RC F L   + +   F       
Sbjct: 229  T-RIAPNAEAYVRSGAQMAALFRDHPAWVARTVEVASRCRFSL---SELRYSFPSDALCM 284

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +  +  LR     G   R  +GA          R +++ EL +IA++  + YFL V  
Sbjct: 285  PGETSDQALRRLTEEGCRDRYPEGA------PPPVRAQIEKELALIAKLGVAPYFLSVQQ 338

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             ++ A+   I +  GRGS A S   + L +T +DP R SLLFERFL+ +R   PD D+DF
Sbjct: 339  VVKIARARQI-LCQGRGSAANSAVCFVLGVTAVDPARSSLLFERFLSEERHEPPDIDVDF 397

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+EVI+ +   YG +R A +    + + K+ALR+VG+A      QVDRL  L+ + 
Sbjct: 398  EHERREEVIQAIYEMYGRDRAAMVSEVIAYRGKSALREVGKAFGFSADQVDRLSGLVHHH 457

Query: 483  PAHPVSLQAIADDSRFREARLADPS---VDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                   +A   + R  EA L DP    V + + ++  LEG  RH S H  G V+   PL
Sbjct: 458  -------EADITEQRVSEAGL-DPDDVRVRQAVMMASALEGFPRHLSIHVGGFVLSSEPL 509

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL------------- 586
             ++ P+         V  ++   ++  G  K D L L  LT ++K+L             
Sbjct: 510  HKVAPVEPARMEGRTVIPWDKDDLDDLGFFKIDVLALGMLTAIRKALGLIHSDRYAGLAG 569

Query: 587  ----------------------------------------DFLAQRGVKVD----LSLIP 602
                                                     F A RG   D    L+ IP
Sbjct: 570  SSVHTARDPAFAGPSVHTARDPAFAGPSVHTARDPAPAGVSFHAGRGAAFDPIAALAQIP 629

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             +D   Y  +    T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V  
Sbjct: 630  PEDPAVYEAIGRADTVGVFQIESRAQMAMLPRLKPNKFYDLVIEVAIVRPGPIQGGMVHP 689

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+ G+E  VS HP +DP+L+ T GV ++QEQVMQIA + +GY+  EAD LRR M   
Sbjct: 690  YLRRRTGQEPPVSPHPCLDPILERTLGVPLFQEQVMQIAMVGAGYTPGEADQLRRDMAAW 749

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    +++ + R I G ++ GIS      +++ +  F +YGF +SHAA++A++ Y +AW+
Sbjct: 750  KKHGRLERHRGRLIQGFAEQGISAKFGEMLYQQIQGFGEYGFPESHAASFALLVYASAWL 809

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN--------TPCVDFKVG 831
            K H+   F  A +  +           QDA++  +++ P  V          P  +   G
Sbjct: 810  KVHHQAAFTCALLNAQPMGFYSPSALVQDAQRHGVEVRPVCVVQSAWDATLEPSAEPSAG 869

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               +   +  +KG+G      I+ A  + PF SL D   R + KK               
Sbjct: 870  PA-LRLGMRLVKGLGEAAVAAIVAAREEAPFASLPDLVRRTELKK--------------N 914

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF-SVENSSV 950
            +    +    L +L   ++ A W  + R  + E +F          + L     +E  ++
Sbjct: 915  EVEALAEAGALAALVPARREALW--RARAPRVEGLFEGVPIEQDRDVGLPPLRPLEQLAL 972

Query: 951  RFENEQRVLGFYFSGHPL-DVYKPILRKMG---IKGYEESVATIRGNNIRLAAMVVSKQQ 1006
             +      +G     HP+  V + + R+ G   ++  EE  A   G ++R+A MVV +Q+
Sbjct: 973  DYGR----VGLSLHDHPMRHVRRALKRRRGAGRVRTAEEIKAARDGESVRVAGMVVGRQR 1028

Query: 1007 KKTRKGSRIGWVTF 1020
              T  G     VTF
Sbjct: 1029 PATASG-----VTF 1037


>gi|163856925|ref|YP_001631223.1| error-prone DNA polymerase [Bordetella petrii DSM 12804]
 gi|163260653|emb|CAP42955.1| DNA polymerase III, alpha subunit [Bordetella petrii]
          Length = 1065

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 265/889 (29%), Positives = 415/889 (46%), Gaps = 62/889 (6%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  LQ  S++S L+GA     ++ + A     A+AITD  +L   +     A +    
Sbjct: 19  PAYAELQCLSNFSFLQGASRPEELVAQAAQLGYAALAITDECSLAGVVRAHVAAKS---- 74

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
               C+L + +   L +      P PT   +VLL    EGY  L EL++ +      K  
Sbjct: 75  ----CELPLIIGSTLALQGSADAPGPT---LVLLAQNREGYGNLSELIT-LGRSRAPKGQ 126

Query: 129 VRICLSWLQEIGTEGLIMLTGGSS-----GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            R+C   +   G  G   L G         P D     ++  +A ++     + F  R +
Sbjct: 127 YRLCADDIAAPGP-GHAHLRGVPDCLAILAPPDS---IDADTLA-RQAAWLARTFPGRAW 181

Query: 184 VNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           V L   HR  D    + V Q A    LP+VA              HD L A+     V+Q
Sbjct: 182 VGLTLLHRARDDLHRAAVQQAAQAAALPMVALGRVQMHLRSRKPLHDTLAAIRSKRSVAQ 241

Query: 243 KDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                +   + +L+ R  + S++    +AL  T+ IA+RCSF L       P       D
Sbjct: 242 CGYDLQANAEQHLRTRLRLASLYPA--DALAQTLVIAQRCSFSLDTLRYEYP-------D 292

Query: 302 DIQKEEENE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
           +I    E     LR +  AG   R   G +     AQ     ++ EL +I  +K+  YFL
Sbjct: 293 EIVPAGETPASYLRREVYAGARGRY-HGDVPASVTAQ-----IEKELTLITELKYEPYFL 346

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V D +Q A++ NI +  GRGS A SV  Y L IT + P +   LFERF++ +R   PD 
Sbjct: 347 TVYDIVQEARRRNI-LCQGRGSAANSVVCYCLGITAVAPEQSKALFERFISKERREPPDI 405

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DF   RR+E+I+Y+ +KYG  R A      + + ++ LRD GRAL +    +D + + 
Sbjct: 406 DVDFEHQRREEIIQYIYDKYGRHRAALTGVVITYRPRSVLRDTGRALGVDLGIIDAVARA 465

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                     L+ + +     ++R+A         +++ L G  RH S H  G VI    
Sbjct: 466 HQWWDGRQAMLRTLGNCGLDPDSRVA----RHWAVLAETLIGFPRHLSQHPGGFVISRGN 521

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
           L++LVP+      D  V Q++   ++  GL+K D L L  L++L ++LD  AQ RG  + 
Sbjct: 522 LARLVPIENAAMPDRSVVQWDKDDLDALGLLKVDILALGMLSVLHRALDLTAQRRGQPLA 581

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           L  IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 582 LHEIPQDDEATYDMICDADTVGVFQIESRAQMSMLPRLRPREYYDLVVQVAIVRPGPIQG 641

Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            +V  Y  R+ G E        +  +L  T+GV I+QEQVMQIA + +G+S  EAD LRR
Sbjct: 642 GMVHPYLKRRQGLEDETYPSEAVRGVLSRTKGVPIFQEQVMQIAMVAAGFSAGEADELRR 701

Query: 716 AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           +M   K K  +DK  ++ ++G  KN  S   A  I   +  F +YGF +SHAA++A+++Y
Sbjct: 702 SMAAWKRKGGIDKYTDKLVAGLLKNNYSAEFAAAIIRQIEGFGEYGFPESHAASFALLAY 761

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-- 832
            ++W+K H P  FLAA +  +        +  QDAR+  + ++P      C +  + +  
Sbjct: 762 ASSWLKRHEPEAFLAALLNSQPMGFYAPAQLVQDARRHGVVVLPADAAVSCWEAALENLP 821

Query: 833 ---------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                      +   L  ++G+     R I +A A +P+    D   R 
Sbjct: 822 APPGQPPARPAVRLGLNQVQGLSEDAGRRIEQARAARPYTDTRDLGRRA 870


>gi|255036108|ref|YP_003086729.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053]
 gi|254948864|gb|ACT93564.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053]
          Length = 1076

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 280/1029 (27%), Positives = 470/1029 (45%), Gaps = 96/1029 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV S++S L GA     ++++        IAITD N L   +     A   G + I
Sbjct: 3    YTELQVTSNFSFLRGASHPEELVEQAMHFGYTKIAITDRNTLAGIVRAHSAARGKGFEVI 62

Query: 71   IGCQLD-IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
               +LD ID                  PS++   +    Y RL  L+S    L   +   
Sbjct: 63   PAARLDLIDG-----------------PSLLAYPTDKPAYARLSALLS----LGNRRTEK 101

Query: 130  RICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              C  + +++    EG+  +   +  P+     F      E+ L  ++   G  LY+   
Sbjct: 102  GKCDLYRRDVYEHAEGMKFV---AVAPVTLNASFEFEPGFERALREYRSELGSELYLAAT 158

Query: 188  RHRGYDRYRESQVVQLAYTHEL------PLVATNNSLFLSEEDYEAHDVLMAVAH-STVV 240
            R      Y ES V +     E+      PLVATN+  +   E  +  D++  V    T+ 
Sbjct: 159  RS-----YVESDVKKFFRLSEISKRLDVPLVATNDVHYHHPERRQLQDIVTCVREKCTIY 213

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            +   R     + YLK+++EM+ IF   P+A+  T EIA  C+F L     + P    +E 
Sbjct: 214  NAGFRLHQNAERYLKDQAEMLRIFRGYPDAIARTQEIAEACTFSLDTLQYVYP----EEI 269

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR----LDFELNVIARMKFSGY 356
                +  + EL   A  G          A+ ++ +   ++    ++ EL  +A M ++ Y
Sbjct: 270  TGGDRSPQEELTYLAWKG----------ARDFYGEPVPEKVASAIEHELKFVAEMDYAAY 319

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D +++A++  I +  GRGS A S   + L IT +DP +F LLFERF++  R   P
Sbjct: 320  FLTVYDIVRFARERGI-LCQGRGSAANSTVCFCLGITSVDPTKFDLLFERFISSARNEPP 378

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  +RR+EVI+Y+  KYG +R A + T   L  K A+RDV +A+ M    +++L 
Sbjct: 379  DIDVDFEHERREEVIQYIYQKYGRDRSAIVATVTQLHQKGAVRDVAKAMGMSVDAINKLS 438

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
              I          + I+D         +DP + ++ +++++  G  R    H  G VI  
Sbjct: 439  SSIWEFTDEWFEGKRISDQG----FNASDPHLMKVADLTKQFMGFPRQLGQHTGGFVITQ 494

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
              ++ L P+      D    ++N   I+  G +K D L L  LT ++K  D L     K 
Sbjct: 495  GKITDLCPIINARMEDRTNIEWNKDDIDTLGFLKIDVLALGMLTCIRKGFDLLRNHYDKT 554

Query: 597  -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ IP DD + Y +++   T+G+FQ+ES   +  L  ++P    D++  V++ RPGPI
Sbjct: 555  YTLATIPQDDPKVYEMISHADTIGVFQIESRAQQSMLPRLKPKNFYDLVIEVAIVRPGPI 614

Query: 656  --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              D +  Y  R+NG+E +      ++ +L  T GV ++QEQ M+IA + +G++ +EAD L
Sbjct: 615  QGDMVHPYLRRRNGEEPVEYPSKELEDILGRTLGVPLFQEQAMKIAIVAAGFTPAEADKL 674

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RR+M   K+   + + +++ I G +  G ++  A  IF  L  F  YGF +SHAA++A++
Sbjct: 675  RRSMATFKLNGLVTQFEKKLIDGMTGRGYTEEYARRIFRQLEGFGSYGFPESHAASFALL 734

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-- 830
             Y + WMK +YP  F  A +  +     +  +   DAR+  +++ P  VN    D  +  
Sbjct: 735  VYVSCWMKCYYPDVFATALLNSQPMGFYQPAQIVIDARKHGVKVRPVDVNISSWDNTLEE 794

Query: 831  --GDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
              G+ R I      +KG+    A  ++ A    P+ ++      +    +++  LE L  
Sbjct: 795  PEGEYRAIRLGFRQVKGLAKKDALALL-AGRTGPYKAIH----LMRDAGVSQEALEKLAD 849

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT--FSDKITLEKFSV 945
            A A    G  R Q           A W     + +    FA  K    F   + L K S+
Sbjct: 850  ADAFRSMGMDRRQ-----------AMWEASALSERPMGAFAGHKSASEFEAPVELPKLSL 898

Query: 946  ENSSVRFENEQRVLGFYFSGHPLD-VYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVS 1003
                V+   +          HP+  V + ++ K  IK  +  +A +R    +R+A +V+ 
Sbjct: 899  SEHVVQ---DYMSTSLSLKAHPVSFVRQDLVAKRVIKTAD--LAGLRDKQFVRVAGLVLV 953

Query: 1004 KQQKKTRKG 1012
            +Q+  T  G
Sbjct: 954  RQRPGTAGG 962


>gi|170742616|ref|YP_001771271.1| DNA polymerase III subunit alpha [Methylobacterium sp. 4-46]
 gi|168196890|gb|ACA18837.1| DNA polymerase III, alpha subunit [Methylobacterium sp. 4-46]
          Length = 1075

 Score =  341 bits (875), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 276/928 (29%), Positives = 427/928 (46%), Gaps = 91/928 (9%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V LQV + YS L GA S   +    A     A+ +TD +++   ++  + A A G + + 
Sbjct: 3   VELQVTTHYSFLRGASSPEELFATAALLGLTALGVTDRHSVAGLVKAHEAARATGCRLVA 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE--GYQRLIELVSRMYLLDQGKQSV 129
           GC+LD+   D                   LLV   +   Y RL  L++    L +G+   
Sbjct: 63  GCRLDLSGPDA---------------GTALLVYPTDRAAYGRLCRLLT----LGKGRAGK 103

Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             C   L ++    EGLI +                 +   +RL   +++FG R +  L 
Sbjct: 104 GGCTLDLSDLAAWREGLIAVL----------LADRPDEALPRRLGRLREVFGRRAHCALT 153

Query: 188 RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-- 244
           R  G  D+ R  +V  LA    +P VAT + L    E     DV+  +   T +      
Sbjct: 154 RRFGVNDQLRLDRVADLARAARIPTVATGDVLCHVPERRLLQDVVTCIRLGTTIDAAGFA 213

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
           R R    H L+  +E   +F+  PEA+E    IA  C F L               DD+ 
Sbjct: 214 RERHAGRH-LQAPAETARLFARHPEAVERARAIAEACRFSL---------------DDLT 257

Query: 305 ---KEEENELRNKAVAGLEVRLAQGAIAK---GYHAQDYRQ-RLDFELNVIARMKFSGYF 357
               +E  E    A+  LE    +GA  +   G   + +RQ R +FEL  IAR  ++ YF
Sbjct: 258 YTYPDEVGEDGRSALERLETMTLEGAARRYPDGVPEEVHRQIRHEFEL--IARKGYAPYF 315

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           L V   +++A++  I +  GRGS A SV  Y L IT IDP+R  LLFERF++ +R   PD
Sbjct: 316 LTVEAIVRFAQRQGI-LCQGRGSAANSVVCYCLGITAIDPVRQKLLFERFVSDNRDEPPD 374

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D+DF  +RR+EVI++V   YG  R A   T     A+ A+R+VG+ L +P      L +
Sbjct: 375 IDVDFEHERREEVIQWVYATYGRHRAALTATVIRYGARGAVREVGKVLGVPEDVTGALAR 434

Query: 478 LIPNDPAHPVSLQAIADDSRFREAR-----LADPSVDRLLEISQKLEGLYRHASTHAAGI 532
           L+        S + + +    REAR     LAD  +   L++++ L G  RH   H  G 
Sbjct: 435 LVWG-----WSREGVGE----REARALNLNLADRRLRLTLDLARALIGTPRHLGQHPGGF 485

Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
           V+    L +L P+      +    +++   IE    +K D LGL  L  L+++ + L + 
Sbjct: 486 VLTLDRLDELCPITPATMENRQTIEWDKDDIEALRFMKVDVLGLGMLGCLRRAFELLGEH 545

Query: 593 GVKVD----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             + D    ++ IP +D  TY ++    TLG+FQ+ES      L  MQP  + D+   V+
Sbjct: 546 RGETDPPREIAAIPPEDEATYAMIRRADTLGVFQIESRAQMAMLPRMQPRNLYDLTIEVA 605

Query: 649 LYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
           + RPGPI  D +  Y  R+ G E+       +  +L+ T GV ++QEQ MQ+A + +G++
Sbjct: 606 VVRPGPIQGDMVHPYLRRRRGIERPEYPSEALRSVLERTLGVPLFQEQAMQVAIVAAGFT 665

Query: 707 LSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +EAD LRRAM   K   ++   +E+ I+G  +NG +   A   F  L  F  YGF +SH
Sbjct: 666 PAEADGLRRAMATFKANGKIGLYREKLIAGMIRNGYAADFAERTFRQLEGFGSYGFPESH 725

Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP- 824
           AA++A+I+Y ++W+K H+P  F  A +  +        +  +DAR+  + + P  VN   
Sbjct: 726 AASFALIAYASSWLKCHHPDVFCCALLNAQPMGFYAPAQIVRDARRHGVPVRPIDVNASR 785

Query: 825 --CVDFKVGDNRIYYSLA--AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
             C   K    R+   L    ++G+       I        F S ED   R     +  R
Sbjct: 786 WDCTLEKAEGPRLAVRLGLRLVRGLANAEGARIATVREADLFRSPEDLWRRT---AVPLR 842

Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNI 908
            LESL  A A    G  R + L ++  +
Sbjct: 843 ALESLAAADAFGSLGLGRREALWAIRGL 870


>gi|330953443|gb|EGH53703.1| error-prone DNA polymerase [Pseudomonas syringae Cit 7]
          Length = 994

 Score =  341 bits (875), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 283/1008 (28%), Positives = 459/1008 (45%), Gaps = 115/1008 (11%)

Query: 44   IAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
            +AI D   L   +   Q + + G+  IIG ++ I+                  P  VLLV
Sbjct: 1    MAIPDECTLAGIVRSWQASISTGLPLIIGSEMHIE----------------NGPKAVLLV 44

Query: 104  STAEGYQRLIELVS-----------RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
             +  GY+ L +L++           R+   D       +   WL +I  +    L  G  
Sbjct: 45   ESQTGYEALCKLITVARRRARKGEYRLLREDFEPAPDGLLAIWLPDIEGDAQACLAHGR- 103

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPL 211
                                  ++ F +RL++ ++ HRG D   R + ++ LA    +P 
Sbjct: 104  --------------------WLRERFAERLWLGVELHRGADDEQRLADLLALAQLLGIPA 143

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEA 270
            VA+ +    +       D + A+ H T V++         + +L+    +   + D    
Sbjct: 144  VASGDVHMHARGRRALQDTMTAIRHHTTVAEAGHLLFANGERHLRPLDALAEHYPDW--L 201

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
            L  +V IARRC+F L+      P     E     +   + LR     G+  R  +G    
Sbjct: 202  LAESVRIARRCTFDLKQLKYEYP----HELVPKGQTPTSWLRELTERGVRKRWPKGLTPA 257

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                   R +++ EL +IA  KF  YFL V D +++A+  +I +  GRGS A S   YAL
Sbjct: 258  ------TRAQVEKELALIAEKKFDSYFLTVHDIVEFARSQHI-LCQGRGSAANSAVCYAL 310

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             IT+++P + +LLFERF++ +R   PD D+DF  DRR+EVI+Y+  +YG  R A      
Sbjct: 311  GITELNPEKSNLLFERFISRERNEPPDIDVDFEHDRREEVIQYIFRRYGRGRAALTAVAS 370

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL-AD-PSV 508
            +     A+RDV + L +P  Q++ L +      A      ++    R RE    AD P +
Sbjct: 371  TYHGSGAMRDVAKVLGLPPDQINALAE------AFSRWSDSLPSPERLREYGFDADTPIL 424

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
             R+L ++ +L G  RH S H  G VI + PL  LVP+     +D  + Q++   ++  GL
Sbjct: 425  KRVLALTGELIGFPRHLSQHPGGFVISEHPLETLVPVENAAMADRTIIQWDKDDLDLVGL 484

Query: 569  IKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            +K D L L  L+ L+++ D +   RG +  L+ +P DD +TY +++   T+G+FQ+ES  
Sbjct: 485  LKVDILALGMLSALRRTFDLVHLHRGKRWTLASLPGDDRKTYEMISRADTIGVFQIESRA 544

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
                L  ++P+   D++  V++ RPGPI  D +  Y  R+NG+E  V+  P ++ + K T
Sbjct: 545  QMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRRNGEEA-VTYPPKLESVFKRT 603

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKT 744
             GV ++QEQVM++A L + Y+  EAD LRRAM   K    ++  +ER  +G  K G    
Sbjct: 604  LGVPLFQEQVMEVAILAADYTPGEADELRRAMAAWKRHGGLEPHRERLRTGMLKKGYEAD 663

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
             A  IFE +  F  YGF +SHAA++A+++Y + W+K H P  F  A +           +
Sbjct: 664  FADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPAAFTCALINSWPMGFYSPDQ 723

Query: 805  FCQDARQFNIQIMPPSVNTPCVDF---------KVGDNRIYYSLAAIKGVGTTTARHIME 855
              QDAR+ +I+I P  V     D          +  +  I   L  ++G     A  I  
Sbjct: 724  LLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDRTRNLAIRLGLRMVRGFREEDALRIEV 783

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
            A A +PF    D   R +   L+ R  E+L  +GA           L+ L   +  A+W 
Sbjct: 784  ARAKRPFVDATDLTLRAE---LDSRAAEALADSGA-----------LRGLIGHRHRARW- 828

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            E         +F  +  +   ++ L   +V    V    +   LG     HPL + +   
Sbjct: 829  EVAGVEAQRPLF-DDLPSEETQVILPLPTVAEDLV---ADYTTLGTTLGPHPLALLR--- 881

Query: 976  RKMGIKGYEESVATIRGNNIR---LAAMVVSKQQKKTRKGSRIGWVTF 1020
            R++  K +  S   +   N R   +A +V+ +Q+  T  G     VTF
Sbjct: 882  RQLAAKRFRSSQDLLHLENDRTLSVAGLVIGRQRPGTASG-----VTF 924


>gi|227541821|ref|ZP_03971870.1| error-prone DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182264|gb|EEI63236.1| error-prone DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 1045

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 225/648 (34%), Positives = 330/648 (50%), Gaps = 63/648 (9%)

Query: 271 LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE---LRNKAVAGLEVRLAQGA 327
           ++ TV +A RC+F   + +P LP +      D+ +   NE   LR        VR     
Sbjct: 279 VKETVRVAHRCAFAFDLVSPNLPLW------DVPEPYGNEMDYLRGIVDKRTPVR----- 327

Query: 328 IAKGYHA------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
               YH+      +  R++++ EL VI  + F GYFLIV D + +    NI    GRGS 
Sbjct: 328 ----YHSRPESIKKKAREQIERELAVIEELDFPGYFLIVNDIVDFCHHENI-YCQGRGSA 382

Query: 382 AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
           A S   +AL IT ++P+   LLFERFL+PDR   PD D+D    RR+EVI+YV  KYG +
Sbjct: 383 ANSAVCFALGITAVEPIHAKLLFERFLSPDRDGPPDIDLDIEAGRREEVIQYVYQKYGRD 442

Query: 442 RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
             AQ+    + + K A+RD GRAL  P   +D   + +  +P  PV              
Sbjct: 443 NAAQVANVITYRTKGAVRDAGRALGYPQGTIDAWSRGV-EEPPEPV-------------- 487

Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
                     + ++ + +G  RH   H+ G+VI DRP++ +VP       +  V Q++  
Sbjct: 488 ----------VALASQFKGQPRHLGIHSGGMVICDRPIADVVPTEWARMENRSVIQWDKD 537

Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
                GL+KFD LGL  L  L   +D +   RG  V L  IP DD   Y +L    T+G+
Sbjct: 538 AAAYGGLVKFDLLGLGMLGALHHMVDQVKTHRGTDVHLWEIPLDDPHIYEMLQRADTVGV 597

Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLI 678
           FQ+ES      L  ++P    DI+  V+L RPGPI    V  Y  R+NG+E +   HP +
Sbjct: 598 FQVESRAQMSTLPRLKPRRFFDIVVEVALVRPGPIQGGSVHPYIRRRNGQEPVTYDHPCL 657

Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISG-A 736
           +  L +T GV ++QEQ+MQ+A+  +G++ +EAD LRRAMG K+  E M K KERF  G A
Sbjct: 658 ENALGKTLGVPLFQEQLMQMAKDAAGFTGAEADELRRAMGSKRSPERMAKLKERFFDGLA 717

Query: 737 SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
           + +GI+  +A  ++  +  FA YGF +SH+ ++A + Y +AW K +YP EF    +  + 
Sbjct: 718 ATHGITGDVAQKLWMKMVAFAAYGFPESHSQSFAGLVYFSAWFKYYYPAEFTVGLLRAQP 777

Query: 797 DNVEKIKKFCQDARQFNIQIMPPSVNTPC--VDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
                 +    DAR+  I I+P  V       D   G   I   L  + G+G+  A+ + 
Sbjct: 778 MGFYSPQSLIADARRHGITILPIDVQVSGEEADTADGGRAIRLGLNLVSGLGSAAAKRVE 837

Query: 855 EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
           ++   +PF S+ D   R D   L    +E+L  AGALD FG  R Q L
Sbjct: 838 KS---QPFTSISDLSRRAD---LTVSQVEALARAGALDSFGVDRRQAL 879



 Score = 45.8 bits (107), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 58/130 (44%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +F  L   SSYS L GA     ++++        +A+TD +  + A+ F++ A   G++ 
Sbjct: 49  AFAELHCTSSYSFLGGASDPEELVERAVQLGLTGLALTDRDGFYGAVAFAEAARDTGLET 108

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           + G +L ++    L +   G   + T+  ++     A G + ++       +   G   V
Sbjct: 109 VFGAELSLEPDRALTVLAIGYEGYVTLSHLITDAHMASGEKDVLYYPPLETIAAAGGLHV 168

Query: 130 RICLSWLQEI 139
            +  +WL E+
Sbjct: 169 LVDHAWLPEL 178


>gi|239978670|ref|ZP_04701194.1| DNA polymerase III alpha subunit [Streptomyces albus J1074]
          Length = 1499

 Score =  340 bits (873), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 283/1046 (27%), Positives = 475/1046 (45%), Gaps = 91/1046 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL   S YSL  GA     + ++ A     A+A+TD + L  A+ F++ A  AG++P
Sbjct: 12   GFTHLHTVSGYSLRYGASHPGLLAERAAERGMDAVALTDRDTLAGAVRFAKAAATAGVRP 71

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF-------PTVPSIVLLV-STAEGYQRLIELVSRMYL 121
            + G +L +      +   QG+ P         +   +  L    A G+  L  LV+  + 
Sbjct: 72   LFGVELAV----GERPRPQGRVPVRGGAFIDESAARVTYLARDGATGWATLCRLVTAAH- 126

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                  + +  L W +  G EG+ +L G +S  + RA        A + L  +++++GD 
Sbjct: 127  ---AAGTDQPLLPWRENHG-EGVTVLLGPASD-VGRALAAGRPDRAARLLAPWREVYGDA 181

Query: 182  LYVNLQRH----RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            L +    H     G    R  ++ V  A    +P V TN   +       A DVL A A 
Sbjct: 182  LRLEAVHHGLSGTGPGSLRLAARTVGFAADQGVPAVLTNAVRYADPGSGPAADVLDA-AR 240

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V     R   + + +LK+ + M      + EA     E A R   + +         +
Sbjct: 241  RLVPVDPRRGLDSGERWLKDAAAMARTAERIAEAAGLGPEGAAR--LLAETRRTADACLV 298

Query: 297  EKECDDI----------------QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            + E DD+                ++  +  L ++A AG+ VRL     A       Y  R
Sbjct: 299  DPE-DDLGIGAVRFPEAALVGAGRRTAQRVLASRAAAGM-VRLGHDRKAA------YWDR 350

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L  EL++I    F+ YFL VA  +   +   + V   RGSGAGS+  + L I   DP+  
Sbjct: 351  LHHELDIIGHHGFATYFLTVAQVVDDVRDLGVRVA-ARGSGAGSLVNHLLGIAHADPVEH 409

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LL ERFL+  R  +PD DID    RR EV R +  ++G ERVA +    + + + A+RD
Sbjct: 410  GLLMERFLSKRRAVLPDIDIDVESARRLEVYRAILGRFGAERVATVAMPETYRVRHAVRD 469

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV---DRLLEISQK 517
            VG AL M  + +DR+ K  P    H  +  A A  +   E +  +      DRL ++ ++
Sbjct: 470  VGAALSMDPADIDRIAKAFP----HIRARDARAALAELPELKQINEEFGGRDRLWQLVEE 525

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            L+ L R  + H  G+++ D  L+   P+       LP++QF+ + +E  GL+K D LG++
Sbjct: 526  LDALPRGVAMHPCGVLLSDASLTARTPVVPTSGEQLPMSQFDKEDVEDLGLLKLDVLGVR 585

Query: 578  TLT-LLQKSLDFLAQRGVKVDL---SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
              + +   + +     G  +DL   +     D  TY L+ +  TLG FQ+ES G R  + 
Sbjct: 586  MQSAMAHATAEVERATGEPLDLDRQADPALADPATYALVRSAETLGCFQIESPGQRDLVG 645

Query: 634  GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
             +QPD   D++  +SL+RPGP+  D +  +   ++G+  +   HP ++  L++T GV+++
Sbjct: 646  RLQPDSFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRYPHPDLEDALRDTYGVVVF 705

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
             EQ+++I  +L+G     AD +RRA+     +   + +  F   A+  G +  +    +E
Sbjct: 706  HEQIIEIVSVLTGCGRDRADQVRRALSD--PDAQGRLRVWFAQHAAARGYTAEVIARTWE 763

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            ++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+
Sbjct: 764  IVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARR 822

Query: 812  FNIQIMPPSVN----TPCVDFKVGDNR------IYYSLAAIKGVGTTTARHIMEASADKP 861
              + ++P  VN    T  ++   GD        +  +L+ + G+    A  I E +   P
Sbjct: 823  RGVPVLPLDVNRSGTTHRIELVSGDGERPGRWGVRLALSDVHGISEAEAARIEEHA---P 879

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + SL DF  R    +  R V E L   GALD FG +R  LL  L  + +           
Sbjct: 880  YTSLLDFWQRA---RPGRPVAERLAQVGALDAFGANRRDLLLHLTELHRG----RPRGAA 932

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                +   +    + ++        + + R   E  VLG   S + +D ++  L ++ + 
Sbjct: 933  AQPTLLGADSAPGARRVPSAGLPDLDETERLSAELGVLGMDASRNLMDDHRDFLEELRVT 992

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQK 1007
                S  ++RG +     +V  +Q +
Sbjct: 993  ----SARSLRGASHGSTVLVAGRQGR 1014


>gi|218197064|gb|EEC79491.1| hypothetical protein OsI_20540 [Oryza sativa Indica Group]
          Length = 430

 Score =  340 bits (873), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 197/443 (44%), Positives = 265/443 (59%), Gaps = 23/443 (5%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+AITD  NL   ++F   A  AGI+PIIG    +          Q +     +  + +
Sbjct: 2   PALAITDFTNLCGLVKFYGSAHGAGIKPIIGADFHV----------QSEVLGDELAQLTV 51

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L S  EGYQ L  L+SR Y    G     I   WL E   EGLI+L+G   G + + F  
Sbjct: 52  LASNNEGYQNLTLLISRAYQRGYGAAGPIIDRDWLIE-HREGLILLSGARQGDVGK-FLL 109

Query: 162 NSSQVAEKRLLTF-KKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLF 219
             +Q    + L F ++ F D  Y+ L R  R  +       V LA    LP+VATN+  F
Sbjct: 110 RGNQAQVDQCLDFYQQYFPDCYYLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRF 169

Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
           L E+D++AH++ +A+     +    RPR  +P  Y+++  EM  +F+D+PEAL N+VEIA
Sbjct: 170 LVEDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEDEMCELFADIPEALLNSVEIA 229

Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ--- 335
           +RC+  +++    LP+F      D+  E+   L++K   GLE RL          AQ   
Sbjct: 230 KRCNVTIRLGEYFLPQF---PTGDMSTEDFLVLKSKE--GLEERLEFLFPDPEVRAQRRP 284

Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
           +Y +RLD EL VI +M F GYFLIV +FIQW+K NN+PVGPGRGSGAGS+ AYAL ITD+
Sbjct: 285 EYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNNVPVGPGRGSGAGSLVAYALKITDL 344

Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
           DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V   YG E V+QIITFG++ AK
Sbjct: 345 DPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAEMYGREAVSQIITFGTMAAK 404

Query: 456 AALRDVGRALQMPYSQVDRLCKL 478
           A +RDVGR L  PY  VDR+ KL
Sbjct: 405 AVIRDVGRVLGHPYGFVDRISKL 427


>gi|329939186|ref|ZP_08288560.1| DNA polymerase III subunit alpha [Streptomyces griseoaurantiacus
            M045]
 gi|329302071|gb|EGG45964.1| DNA polymerase III subunit alpha [Streptomyces griseoaurantiacus
            M045]
          Length = 1231

 Score =  340 bits (872), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 291/1068 (27%), Positives = 473/1068 (44%), Gaps = 82/1068 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL   S +SL  GA     + ++       A+A+TD + L  A+ F++    AG++P
Sbjct: 3    AFPHLHTASGFSLRYGASHPERLAERAGERGMDALALTDRDTLAGAVRFTRACVKAGVRP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGK-TPF-------PTVPSIVLLV-STAEGYQRLIELVSRMY 120
            + G  L +      +   + + TP         + P +  L    A G+  L  +VS  +
Sbjct: 63   LYGVDLAVAPYSPARPGRERRRTPVRGGAFVDESAPRVTFLARDGATGWADLCRIVSAAH 122

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                      + L W    G EGL +L G  S  + RA        A + L  +++ +G 
Sbjct: 123  AGRTPGDGPPL-LPWEASHG-EGLTVLLGPDSD-VGRALAAGRPDRAARLLAPWRERYGA 179

Query: 181  RLYVNLQRH----RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             L +    H     G    R  ++ V  A    +  V +N + +         DVL A A
Sbjct: 180  ALRLEAVWHGRTGTGPGSLRLAARTVGFAAEQGVRPVLSNAARYADPGLGPVADVLDA-A 238

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARRCSF- 283
               V     +   + + +LK+   M      + EA           LE T   A  C   
Sbjct: 239  RRLVPIDPAKELDSGEAWLKDTGAMTEAAERIVEAAGFPRGAAHHLLEQTRATAAECVVD 298

Query: 284  ------ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
                  I  VH P  P  +       ++  +  L ++A AG+ VRL           + Y
Sbjct: 299  PEDDLGIGTVHFP-EPHLVGA----ARRTAQRTLASRAAAGM-VRLGHAG------RRAY 346

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             +R+  EL++IA   F+ YFL VA  +   +   I V   RGSGAGS+  + L I   DP
Sbjct: 347  WERMHQELDIIAHHDFASYFLTVAQVVDDVRGMGIRVA-ARGSGAGSLVNHLLGIAHADP 405

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
            +   LL ERFL+  R  +PD DID    RR EV R + +++G ERVA +    + + + A
Sbjct: 406  VEHGLLMERFLSKRRPVLPDIDIDVESARRIEVYRAIIDRFGAERVATVAMPETYRVRHA 465

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
            +RDVG AL M  +++DR+ K  P+  A  V   A+ +    R          RL E+ + 
Sbjct: 466  VRDVGAALSMDPAEIDRIAKSFPHIRARDVR-AALDELPELRALAGERERYGRLWELVEA 524

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            L+ L R  + H  G+++ D  L    P+       LP++QF+   +E+ GL+K D LG++
Sbjct: 525  LDALPRGIAMHPCGVLLSDASLRDRTPVVPTSGEGLPMSQFDKDDVEELGLLKLDVLGVR 584

Query: 578  TLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
              + +  ++  + +  G ++DL  +P  D  TY L+ +  TLG FQ+ES G R  +  +Q
Sbjct: 585  MQSAMAHAVAEVERTSGERIDLDAVPPGDPATYGLIRSAETLGCFQIESPGQRDLVGRLQ 644

Query: 637  PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
            P    D++  +SL+RPGP+  D +  +   ++G+  +   HP ++  LKET GV+++ EQ
Sbjct: 645  PATFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRYPHPDLEGPLKETYGVVVFHEQ 704

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            ++ I   L+G  L EAD +RR +     E   + +  F   A+  G         +E++ 
Sbjct: 705  IIHIVHTLTGCGLDEADRVRRGLSDP--EAQGRIRVWFAQQAAARGYGAETIARTWEIVE 762

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+  +
Sbjct: 763  AFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRGV 821

Query: 815  QIMPPSVNTPCVDFKV-----GDNR-----IYYSLAAIKGVGTTTARHIMEASADKPFDS 864
             ++P  VN   V  ++     G+ R     +  +L+ + G+    A  I   +A +P+ S
Sbjct: 822  PVLPLDVNRSGVAHRIELVSEGEGRAGAWGLRLALSDVHGISEAEAARI---AAGQPYAS 878

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            L DF  R    + +R V   L   GALD FG +R  L   L  + + A+     +     
Sbjct: 879  LLDFWERA---RPSRPVAGRLAQVGALDAFGANRRDLQLHLTELHRGARGGGGGQ----- 930

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                   G  +    L   S E    R   E  VL    S H +D ++  L ++ +    
Sbjct: 931  --LPLAGGRRTASAGLPDLSEEE---RLSAELGVLSMDASRHLMDDHRAFLDELRVLSAR 985

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   G  + +A    + Q    R G R+ + T  +     +  FF
Sbjct: 986  RLREARHGETVLVAGAKAATQTPPIRSGRRVIFTTLDDGTGLVDLAFF 1033


>gi|308049973|ref|YP_003913539.1| DNA polymerase III, alpha subunit [Ferrimonas balearica DSM 9799]
 gi|307632163|gb|ADN76465.1| DNA polymerase III, alpha subunit [Ferrimonas balearica DSM 9799]
          Length = 1021

 Score =  340 bits (872), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 286/1032 (27%), Positives = 475/1032 (46%), Gaps = 108/1032 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F  L+  S+YS L+GA   + ++ + A     A+A+TD  +L   ++    A +AG++ 
Sbjct: 7    GFAQLRSASNYSFLQGASHPDELVQQAAELGYDALALTDECSLAGVVKAHMAAKSAGLKL 66

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +  +D QD L +    +  +  + +++ L                 Y L+    ++
Sbjct: 67   IVGSEFVLD-QDRLILLAMNRVGYGELSALITLARR--------RCDKGQYRLEWDDLTL 117

Query: 130  RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              CL  W     TE L                        +R     + F +R+++  +R
Sbjct: 118  PNCLLLWAPAAPTEAL------------------------ERGRWLARRFAERIFLVAER 153

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
              RG +    +    LA   E+P+VA +      +      D L  +     + Q   R 
Sbjct: 154  MLRGGEGEWLTAQEALARQLEVPMVAADPVRMHEKARQPLLDALTCIRLGCSLEQAGGRL 213

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-----QVHAPILPRFIEKECD 301
                + YLK R+ +V       E L +TV +A RC F L     +  A ++P  +     
Sbjct: 214  AGNAEAYLKPRTRLVQ--RHRAEWLASTVSLASRCQFSLDELRYEYPAELVPEGMSAS-- 269

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                   + LR + + G   R  +         +   ++L+ E  +I  + +  +FL + 
Sbjct: 270  -------DHLRQETLKGARRRYGEAV------PESVSRQLEQEFALIDELGYHYFFLTIY 316

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +Q+AK+  I +  GRGS A SV  Y L IT++DP + +LLFERFL+ +R   PD D+D
Sbjct: 317  DIVQFAKREAI-LHQGRGSAANSVVCYCLGITEVDPTKVNLLFERFLSRERDEPPDIDVD 375

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP- 480
            F   RR+EVI+Y+  KYG  R A   T  S + K+A+RD+G+ L +    ++R  + +  
Sbjct: 376  FEHQRREEVIQYIYRKYGRGRAALAATVISYRFKSAMRDLGKVLGIDEGLIERGLRGVDR 435

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP+ P   Q  A         L  P    L+ + ++L G  RH S H  G VI   PLS
Sbjct: 436  RDPSQPWQAQLAALG-------LTGPRALLLIRLVEQLLGFPRHLSQHVGGFVISAGPLS 488

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
            +LVP+     ++  V Q++   +E  GL+K D L L  L+ +++ L  + Q RG  + L+
Sbjct: 489  ELVPVENAAMAERTVIQWDKDDLEALGLLKVDILALGMLSAIRRCLQSVGQWRGQPMALA 548

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DN 657
             +  DD   Y +L    ++G+FQ+ES      L  ++P    D++  +++ RPGPI  D 
Sbjct: 549  DVVADDPAVYDMLCRADSVGVFQIESRAQSNMLPRLRPRSYYDLVVQIAIVRPGPIQGDM 608

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +  Y  R++G E +      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM
Sbjct: 609  VHPYLKRRHGLEPVSYPSEAVREVLERTLGVPIFQEQVIKLAMVAAGFSGGEADKLRRAM 668

Query: 718  GK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
               K   E++K + +   G ++ G S   A  IF  +  F +YGF +SH+A++A+++Y +
Sbjct: 669  ASWKRHGELEKFERKLKQGMAERGYSAEFADQIFRQIRGFGEYGFPESHSASFALLAYAS 728

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GD 832
            AW+K HYPV F  A +  +        +  QD ++ N Q++P SVN    D +V    G 
Sbjct: 729  AWLKYHYPVAFTCALLNSQPMGFYTPSQLVQDLQRHNGQVLPLSVNHSQWDHQVEAVQGQ 788

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              +   L  +KG+       ++    +  F S+      V   +L+R  LE+L  A AL 
Sbjct: 789  MALRLGLRLVKGLSRQAVETLLAVRPEGGFSSVHQL---VSLARLDRGALEALASADALA 845

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                 R Q           A+W+      +   +FA  + T    +TL     E   +  
Sbjct: 846  ELAGHRHQ-----------ARWLLAGEAQQL-PLFAELEPT--TDVTLSGPD-EAEGIVA 890

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI----RGNNIRLAAMVVSKQQKK 1008
            + +Q   G     HPL     +LR+ G      + A +     G  ++LA +VV +Q+  
Sbjct: 891  DYQQ--TGLSLGRHPLS----LLREQGQLARCLTAAQLLSCQHGQLVQLAGLVVGRQRPG 944

Query: 1009 TRKGSRIGWVTF 1020
            T  G     VTF
Sbjct: 945  TASG-----VTF 951


>gi|12045116|ref|NP_072927.1| DNA polymerase III, alpha subunit [Mycoplasma genitalium G37]
 gi|255660357|ref|ZP_05405766.1| DNA polymerase III, alpha subunit [Mycoplasma genitalium G37]
 gi|2494193|sp|Q49405|DPO3A_MYCGE RecName: Full=DNA polymerase III subunit alpha
 gi|1045954|gb|AAC71482.1| DNA polymerase III, alpha subunit [Mycoplasma genitalium G37]
 gi|166078627|gb|ABY79245.1| DNA polymerase III, alpha subunit [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 874

 Score =  340 bits (872), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 193/568 (33%), Positives = 311/568 (54%), Gaps = 16/568 (2%)

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
           Y+ RL+ ELNVI ++ F+ YFL+V D + +A K +I +G GRGS  GS+ A+ L IT ID
Sbjct: 273 YQLRLEKELNVINKLNFASYFLVVNDLVNYAFKKDILIGSGRGSAVGSLVAFLLNITKID 332

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           P++  L+FERF++  R  +PD DID  +++R E+I Y+  KYG E  AQI+TF   + ++
Sbjct: 333 PVQHQLIFERFISTHRQDLPDIDIDIMENKRAEMINYLFEKYGKENCAQIVTFQRFKTRS 392

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
           A+++V +     Y   D +  ++P D     +     +DS  +   L       ++E++ 
Sbjct: 393 AVKEVAKLFN-DYGISDMILGVLPKDQTITFTDLKATEDSALQ---LCLQQFGLIVELAL 448

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            +    R +S HA+GIVI    L + +P+ + + ++  +TQ +M+W+    L KFD LGL
Sbjct: 449 AIVDFPRQSSIHASGIVIASNSLIKTIPLLQ-LDNNHFLTQVSMEWLSFFNLNKFDLLGL 507

Query: 577 KTLTLLQKSLDFLAQRGVKVD--LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
             LT++   +  +      V+  L+ I + D  T+  L  + TLGIFQLES GM++ L  
Sbjct: 508 INLTMISDVITQIKPSNQTVNQFLNTISWTDQNTFINLVNEDTLGIFQLESFGMKKLLVQ 567

Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
           ++P  I  +  +++LYRPG  DNI ++ NR +       I P I P++K T GV+I+QEQ
Sbjct: 568 IKPKTINQLAIVLALYRPGAQDNINLFINRLHNGYDQSDIDPRILPIVKNTYGVLIFQEQ 627

Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
           ++ I ++++ YSL EAD  RRA+ KK  + + K K  F   A +N         IF  + 
Sbjct: 628 IINIVKVVANYSLEEADSFRRAISKKDVKLIQKNKRNFFERAVQNNFDLKTTTKIFSYIE 687

Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
           +FA+YGFN SHA  YA++SY TAW+KT+YPV F    +     + +K K   +   +  I
Sbjct: 688 RFANYGFNLSHALGYALLSYWTAWLKTNYPVYFYLWLLNHFQSSKDKQKLIIRTLEKSGI 747

Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV------GTTTARHIMEASADKPFDSLEDF 868
           +I PP +N    +  + + +IY  L  IKG+           +H+++   +     L D 
Sbjct: 748 EIYPPLLNKAQPNSVIENKKIYLGLNLIKGINDRYIQNLQKVQHLIQTQNNL---QLTDV 804

Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGY 896
            S    K +    L+ L+    + CF +
Sbjct: 805 VSWCLDKTIGDIPLKDLLLLKTMGCFDF 832



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV+L  +S Y+ L  ALS   +++    DQQ A+AITD  NLF A+EF        I+PI
Sbjct: 2   FVNLHTNSYYNFLNSALSPKKLVNLAINDQQKAVAITDP-NLFGAVEFFITCKQNNIKPI 60

Query: 71  IGCQLDIDMQDN---LKMTNQGKTPFPTVPSIVLL 102
           IG  L ++ Q N   L +  +    F T+  I L+
Sbjct: 61  IGLNLTVEYQKNDVKLLLIAKSNKGFQTLNKIALI 95


>gi|291450565|ref|ZP_06589955.1| DNA polymerase III [Streptomyces albus J1074]
 gi|291353514|gb|EFE80416.1| DNA polymerase III [Streptomyces albus J1074]
          Length = 1489

 Score =  340 bits (872), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 283/1046 (27%), Positives = 475/1046 (45%), Gaps = 91/1046 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL   S YSL  GA     + ++ A     A+A+TD + L  A+ F++ A  AG++P
Sbjct: 2    GFTHLHTVSGYSLRYGASHPGLLAERAAERGMDAVALTDRDTLAGAVRFAKAAATAGVRP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF-------PTVPSIVLLV-STAEGYQRLIELVSRMYL 121
            + G +L +      +   QG+ P         +   +  L    A G+  L  LV+  + 
Sbjct: 62   LFGVELAV----GERPRPQGRVPVRGGAFIDESAARVTYLARDGATGWATLCRLVTAAH- 116

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                  + +  L W +  G EG+ +L G +S  + RA        A + L  +++++GD 
Sbjct: 117  ---AAGTDQPLLPWRENHG-EGVTVLLGPASD-VGRALAAGRPDRAARLLAPWREVYGDA 171

Query: 182  LYVNLQRH----RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            L +    H     G    R  ++ V  A    +P V TN   +       A DVL A A 
Sbjct: 172  LRLEAVHHGLSGTGPGSLRLAARTVGFAADQGVPAVLTNAVRYADPGSGPAADVLDA-AR 230

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V     R   + + +LK+ + M      + EA     E A R   + +         +
Sbjct: 231  RLVPVDPRRGLDSGERWLKDAAAMARTAERIAEAAGLGPEGAAR--LLAETRRTADACLV 288

Query: 297  EKECDDI----------------QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            + E DD+                ++  +  L ++A AG+ VRL     A       Y  R
Sbjct: 289  DPE-DDLGIGAVRFPEAALVGAGRRTAQRVLASRAAAGM-VRLGHDRKAA------YWDR 340

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L  EL++I    F+ YFL VA  +   +   + V   RGSGAGS+  + L I   DP+  
Sbjct: 341  LHHELDIIGHHGFATYFLTVAQVVDDVRDLGVRVA-ARGSGAGSLVNHLLGIAHADPVEH 399

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LL ERFL+  R  +PD DID    RR EV R +  ++G ERVA +    + + + A+RD
Sbjct: 400  GLLMERFLSKRRAVLPDIDIDVESARRLEVYRAILGRFGAERVATVAMPETYRVRHAVRD 459

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV---DRLLEISQK 517
            VG AL M  + +DR+ K  P    H  +  A A  +   E +  +      DRL ++ ++
Sbjct: 460  VGAALSMDPADIDRIAKAFP----HIRARDARAALAELPELKQINEEFGGRDRLWQLVEE 515

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            L+ L R  + H  G+++ D  L+   P+       LP++QF+ + +E  GL+K D LG++
Sbjct: 516  LDALPRGVAMHPCGVLLSDASLTARTPVVPTSGEQLPMSQFDKEDVEDLGLLKLDVLGVR 575

Query: 578  TLT-LLQKSLDFLAQRGVKVDL---SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
              + +   + +     G  +DL   +     D  TY L+ +  TLG FQ+ES G R  + 
Sbjct: 576  MQSAMAHATAEVERATGEPLDLDRQADPALADPATYALVRSAETLGCFQIESPGQRDLVG 635

Query: 634  GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
             +QPD   D++  +SL+RPGP+  D +  +   ++G+  +   HP ++  L++T GV+++
Sbjct: 636  RLQPDSFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRYPHPDLEDALRDTYGVVVF 695

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
             EQ+++I  +L+G     AD +RRA+     +   + +  F   A+  G +  +    +E
Sbjct: 696  HEQIIEIVSVLTGCGRDRADQVRRALSD--PDAQGRLRVWFAQHAAARGYTAEVIARTWE 753

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            ++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+
Sbjct: 754  IVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARR 812

Query: 812  FNIQIMPPSVN----TPCVDFKVGDNR------IYYSLAAIKGVGTTTARHIMEASADKP 861
              + ++P  VN    T  ++   GD        +  +L+ + G+    A  I E +   P
Sbjct: 813  RGVPVLPLDVNRSGTTHRIELVSGDGERPGRWGVRLALSDVHGISEAEAARIEEHA---P 869

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + SL DF  R    +  R V E L   GALD FG +R  LL  L  + +           
Sbjct: 870  YTSLLDFWQRA---RPGRPVAERLAQVGALDAFGANRRDLLLHLTELHRG----RPRGAA 922

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                +   +    + ++        + + R   E  VLG   S + +D ++  L ++ + 
Sbjct: 923  AQPTLLGADSAPGARRVPSAGLPDLDETERLSAELGVLGMDASRNLMDDHRDFLEELRVT 982

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQK 1007
                S  ++RG +     +V  +Q +
Sbjct: 983  ----SARSLRGASHGSTVLVAGRQGR 1004


>gi|84624896|ref|YP_452268.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzae MAFF
            311018]
 gi|84368836|dbj|BAE69994.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzae MAFF
            311018]
          Length = 1065

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 276/1032 (26%), Positives = 469/1032 (45%), Gaps = 93/1032 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + +   G++
Sbjct: 28   PTYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRVTGVR 87

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +    + D  +               VLLV  A GY ++  LV+        +++
Sbjct: 88   LIVGSEFT--LIDGTR--------------FVLLVENAHGYPQVCGLVT------TARRA 125

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                   L     E           P   A +    Q   ++    +++FG+R ++ ++ 
Sbjct: 126  ASKGAYRLGRADVEAQFR----DVAPGVFALWLPGVQPQAEQGAWLQQVFGERAFLAVEL 181

Query: 189  HRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D     QV+Q LA    +  VA+ +       +    D L A+ H+  +++     
Sbjct: 182  HREQDDGARLQVLQALAQQLGMTAVASGDVHMAQRRERIVQDTLTAIRHTLPLAECGAHL 241

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  + +I+ D    L+  V +A+RC+F +   +   PR +  E       
Sbjct: 242  FRNGERHLRTRRALGNIYPD--ALLQAAVALAQRCTFDISKISYTYPRELVPE----GHT 295

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR    AG+  R   G  AK       R+ ++ EL +IA  K+  +FL V D +++
Sbjct: 296  PTSYLRQLTEAGIRKRWPGGITAK------VREDIEKELALIALKKYEAFFLTVQDVVRF 349

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++ NI +  GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF  +R
Sbjct: 350  AREQNI-LCQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHER 408

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAH 485
            R+EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L       +   
Sbjct: 409  REEVLQYVYRKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGET 468

Query: 486  PVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            P+       + R  EA   LA+P ++++L +++ L    RH S H  G VI D PLS LV
Sbjct: 469  PM-------EQRIEEAGFDLANPLINKILLVTEHLRDHPRHLSQHVGGFVISDEPLSLLV 521

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
            P+     +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P
Sbjct: 522  PVENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYSIATLP 581

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  
Sbjct: 582  GEDLPTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHP 641

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+ G+E +    P ++ +LK T GV ++QEQVM++    + Y+ SEAD LRR+M   
Sbjct: 642  YLRRRQGREDVSYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYTESEADNLRRSMAAW 701

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            +   +M++ + R        G + T    IFE +  F  YGF +SHAA++A + Y + W+
Sbjct: 702  RRGGDMEQHRMRVRERMQGKGYASTFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWL 761

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-----IQIMPPSVNTPCVDFKVGDNR 834
            K H P  F    +  +        +  QDAR+ +     ++++P  V     D  +   R
Sbjct: 762  KRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVVHSDWDNTLVGGR 821

Query: 835  IYYSLA-------------AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
             + S A              + G+    A+ I+ A   + F  + D C R     L+ + 
Sbjct: 822  PWRSAADPGEQPAIRLGMRQVAGLSDVVAQRIVAARTQRAFADIGDLCLRA---ALDEKA 878

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
              +L  AGA           LQ +   +  A+W       +   +     G+  ++    
Sbjct: 879  CLALAEAGA-----------LQGMVGNRNAARWAMAGVEARRPLL----PGSPEERPV-- 921

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
             F   ++      + R +G     HP+ + +P +R+  I G  +      G+ + +A +V
Sbjct: 922  AFEAPHAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRDLQGRPHGSGVHVAGLV 981

Query: 1002 VSKQQKKTRKGS 1013
              +Q+  T KG+
Sbjct: 982  TQRQRPATAKGT 993


>gi|317125081|ref|YP_004099193.1| DNA polymerase III subunit alpha [Intrasporangium calvum DSM 43043]
 gi|315589169|gb|ADU48466.1| DNA polymerase III, alpha subunit [Intrasporangium calvum DSM
           43043]
          Length = 1391

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 203/566 (35%), Positives = 316/566 (55%), Gaps = 23/566 (4%)

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
           RL+ EL VI  + ++ YFL VA      ++  + V   RGSGAGSV  Y L I+ ++P+R
Sbjct: 438 RLEDELQVIETLGYATYFLTVAQVCDLIREMGVRVA-ARGSGAGSVVNYLLGISGVEPMR 496

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
             LL ERF +P R  +PD DID    RR E+   V   +G ERV  +    + + + A+R
Sbjct: 497 HGLLMERFCSPLRAELPDIDIDVESARRTEIYERVLGHFGGERVTCVSMMDTYRVRHAIR 556

Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
           D G AL +P  ++D + K  P+  A  V   AIA+    R + L  P +  + +I ++L+
Sbjct: 557 DAGAALGLPPQEIDAMAKAFPHIAARNVR-NAIAELPELRASGLDVPRLQLMYDIVERLD 615

Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
           GL RH + H  G+V+ D  L    P+        P++QF+   +E  GL+K D LG++  
Sbjct: 616 GLPRHIALHPCGVVLSDSGLLDRTPVEASWLG-FPMSQFDKDDVEALGLLKLDILGIRMQ 674

Query: 580 TLLQKSLDFLAQ-RGVKVDL---SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
           + + +++  + +  G KVDL   + +PFDD ET+ L+ +  TLG FQ+ES G R+ +   
Sbjct: 675 SAMAQAVAEVERVDGTKVDLDDEASVPFDDAETFELIRSTRTLGCFQIESPGQRELIGKF 734

Query: 636 QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
            P   EDII  +SL+RPGP+  D IV + N + G ++   +HP + P L+ET+GV+++ E
Sbjct: 735 GPQTFEDIIIDISLFRPGPVKSDMIVPFLNARQGWKEPTYLHPTLVPALQETEGVVVFHE 794

Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
           QV+++    +G +L+EAD +RRA+G    +E  K ++ +   A   G S+     I+++L
Sbjct: 795 QVLKLVAETTGVTLAEADEVRRALGSPQGQE--KVEKWWRPAALARGYSREDVDRIWDVL 852

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             FA +GF K+HAAA+A+ +YQ+AW+KTH+P  FLA  +T +     K +    DAR F 
Sbjct: 853 KAFASFGFCKAHAAAFALPTYQSAWLKTHHPAAFLAGVLTHDPGMYPK-RLILDDARAFG 911

Query: 814 IQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
           I I+   VN    +++      GD  I  SLA ++G+       I+ A   +P+ SL DF
Sbjct: 912 ITILGLDVNVSTGEYRFERTEDGDEAIRLSLADVRGISDLEIAGIVAA---QPYASLSDF 968

Query: 869 CSRVDSKKLNRRVLESLVFAGALDCF 894
             R    +++R   E LV AGA D  
Sbjct: 969 WQRA---RVSRPTAERLVLAGAFDSL 991



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
          SFVHL V S YS+  G      ++++ AA  QPA+A+TD + L+ A++F     A  + P
Sbjct: 4  SFVHLHVASGYSMRYGTAKPEQLVERAAAFGQPALALTDRDGLYGAVKFVTACLAHDVAP 63

Query: 70 IIGCQL 75
          I+G  L
Sbjct: 64 ILGVDL 69



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%)

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R   E  VLG   SGH +D Y+P+L  +G+   +E ++   G  + +A + V+ Q    R
Sbjct: 1158 RVRAELEVLGLDASGHVVDFYRPMLDALGVARADELLSGRSGREVWVAGVKVATQTPPIR 1217

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G R+ ++T  +     +  FF
Sbjct: 1218 SGRRVVFLTLDDATGPVDLTFF 1239


>gi|307328895|ref|ZP_07608064.1| DNA polymerase III, alpha subunit [Streptomyces violaceusniger Tu
            4113]
 gi|306885405|gb|EFN16422.1| DNA polymerase III, alpha subunit [Streptomyces violaceusniger Tu
            4113]
          Length = 1194

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 297/1104 (26%), Positives = 480/1104 (43%), Gaps = 119/1104 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL   S +S+  GA     +  + A     AIA+TD ++L  A+ F++    AG++
Sbjct: 2    PGFTHLHTASGFSMRYGAAHPERLAQRAAERGMDAIALTDRDSLAGAVRFARACERAGVR 61

Query: 69   PIIGCQLDIDMQD--------NLKMTNQGKTPFPTVPSIVLLV-STAEGYQRLIELVSRM 119
            P+ G  L +  +D               G     + P  V L    A G+  L  LVS  
Sbjct: 62   PLFGVDLAVRREDPEPGRTVRRRTPVRGGAFIDESTPRAVFLARDGAAGWAALCGLVSAA 121

Query: 120  YLLDQGKQSVRI------CLSWLQEIGTEG----LIMLTGGSSGPIDRAFFFNSSQVAEK 169
            +       S R        L W   +   G    L +L G  S  + RA        A +
Sbjct: 122  HAGLTHSGSARTNGDGPPLLHWRDLVSDPGALAPLTVLLGPDSD-VGRALAAGRPDRAAR 180

Query: 170  RLLTFKKLFGDRLYVNLQRH----RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEED 224
             +  + +LFGD L +    H     G    R  ++ +  A    +P V +N + +    +
Sbjct: 181  LIAPWHELFGDALRLEAVWHGRTGTGPGSLRLAARTLGFAADQGIPAVLSNAARYADPGE 240

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTP------DHYLKNRSEMVSIFSDLPEA-------- 270
                DVL A      +  +     TP      + +LK   +M      + EA        
Sbjct: 241  GPVADVLDAARRLVPIDPR-----TPGALDSGERWLKGPLDMAKAAERIVEAAGMRRDAA 295

Query: 271  ---LENTVEIARRCSF-------ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
               LE T   A  C         +  VH P  PR +       ++  E  LR++  A + 
Sbjct: 296  HRLLEETRRTAAACLVDPEDHIGLGSVHFP-EPRLVGAG----RRSAERVLRSRCAAAMV 350

Query: 321  VRLAQGAIAKGYHAQDYR-QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
            +R        GY     R +RL+ EL  I R+ F+ YFL VA  +   ++  I V   RG
Sbjct: 351  LR--------GYDRDRVRWERLEDELRTIERLGFASYFLTVAQVVDDTRELGIRVA-ARG 401

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            SGAGS   + L I   DP+   LL ERFL+  R ++PD DID    RR +V R +  ++G
Sbjct: 402  SGAGSFVNHLLGIAHADPVANGLLMERFLSVRRAALPDIDIDVESARRLDVYRTIFERFG 461

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ERVA +    + + + A+RDVG AL M  ++VDRL K  P    H  +  A A  +   
Sbjct: 462  AERVATVSMPETYRVRHAVRDVGAALGMDPAEVDRLAKSFP----HIRARDARAALAELP 517

Query: 500  EARLADPSVDR---LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            E R      +R   L ++ + L+GL R  + H  G+++ D  L    P+        P++
Sbjct: 518  ELRAVAAEQERFGKLWDLVEALDGLPRGIAMHPCGVLLSDAGLLARTPIVPTSGEGFPMS 577

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----DLSLIPFDDHETYHLL 612
            QF+   +E+ GL+K D LG++  + +  ++  + +   +V    D   +   D  TY L+
Sbjct: 578  QFDKDDVEELGLLKLDVLGVRMQSAMAHAVTEIRRTTGRVVDIDDPGQVRPGDPATYDLI 637

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEK 670
             +  TLG FQ+ES G R  L  +QP    D++  +SL+RPGP+  D +  + + ++G++ 
Sbjct: 638  RSTETLGCFQIESPGQRDLLGRLQPTTFHDLVVDISLFRPGPVAADMVRPFIDARHGRKP 697

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
                HP ++  L+ET GV+++ EQ+++I  +++G     AD  RRA+     E   + + 
Sbjct: 698  ARYPHPDLEDALRETHGVVVFHEQIIKIVSIMTGCERDLADEARRALSN--PERQGRVRA 755

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F + A K G +  + +  +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A 
Sbjct: 756  WFHAEAEKRGYAPEVRLRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAG 815

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNR------------ 834
             +T +     K +    DAR+  + I+P  VN     +++    GD+R            
Sbjct: 816  LLTHDPGMYPK-RLLLADARRRGVPILPLDVNRSGAAYRIELTSGDSRGISNKEDRRSKG 874

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  +  +L+ + G+       I   +A +P+ SL+D   R       R V E L   
Sbjct: 875  NEDSIGVRLALSDVHGISEAETERI---AAGQPYSSLQDLWLRAHP---GRPVAERLAQV 928

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GALD FG SR  LL  +  + +  Q     R +    +   E G  +    L     +  
Sbjct: 929  GALDAFGTSRRDLLLQIAELHR--QQRGAARRDAEGQLPLAETGPAA-PAGLPDLDADE- 984

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R   E  +LG   S H +  ++  L ++G    +       G  + +A    + Q   
Sbjct: 985  --RLGAELGILGMDVSRHLMGDHRDFLEELGAIPAKRLRDAPHGEVVLVAGAKAATQTPP 1042

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
             R G R+ + T  +     +  FF
Sbjct: 1043 IRSGRRVIFTTLDDGTGLVDCAFF 1066


>gi|58583062|ref|YP_202078.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzae
            KACC10331]
 gi|71151846|sp|Q5GX78|DNAE2_XANOR RecName: Full=Error-prone DNA polymerase
 gi|58427656|gb|AAW76693.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzae
            KACC10331]
          Length = 1083

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 276/1032 (26%), Positives = 469/1032 (45%), Gaps = 93/1032 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + +   G++
Sbjct: 46   PTYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRVTGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +    + D  +               VLLV  A GY ++  LV+        +++
Sbjct: 106  LIVGSEFT--LIDGTR--------------FVLLVENAHGYPQVCGLVT------TARRA 143

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                   L     E           P   A +    Q   ++    +++FG+R ++ ++ 
Sbjct: 144  ASKGAYRLGRADVEAQFR----DVAPGVFALWLPGVQPQAEQGAWLQQVFGERAFLAVEL 199

Query: 189  HRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D     QV+Q LA    +  VA+ +       +    D L A+ H+  +++     
Sbjct: 200  HREQDDGARLQVLQALAQQLGMTAVASGDVHMAQRRERIVQDTLTAIRHTLPLAECGAHL 259

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  + +I+ D    L+  V +A+RC+F +   +   PR +  E       
Sbjct: 260  FRNGERHLRTRRALGNIYPD--ALLQAAVALAQRCTFDISKISYTYPRELVPE----GHT 313

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR    AG+  R   G  AK       R+ ++ EL +IA  K+  +FL V D +++
Sbjct: 314  PTSYLRQLTEAGIRKRWPGGITAK------VREDIEKELALIALKKYEAFFLTVQDVVRF 367

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++ NI +  GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF  +R
Sbjct: 368  AREQNI-LCQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHER 426

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAH 485
            R+EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L       +   
Sbjct: 427  REEVLQYVYRKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGET 486

Query: 486  PVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            P+       + R  EA   LA+P ++++L +++ L    RH S H  G VI D PLS LV
Sbjct: 487  PM-------EQRIEEAGFDLANPLINKILLVTEHLRDHPRHLSQHVGGFVISDEPLSLLV 539

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
            P+     +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P
Sbjct: 540  PVENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYSIATLP 599

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  
Sbjct: 600  GEDLPTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHP 659

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+ G+E +    P ++ +LK T GV ++QEQVM++    + Y+ SEAD LRR+M   
Sbjct: 660  YLRRRQGREDVSYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYTESEADNLRRSMAAW 719

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            +   +M++ + R        G + T    IFE +  F  YGF +SHAA++A + Y + W+
Sbjct: 720  RRGGDMEQHRMRVRERMQGKGYASTFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWL 779

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-----IQIMPPSVNTPCVDFKVGDNR 834
            K H P  F    +  +        +  QDAR+ +     ++++P  V     D  +   R
Sbjct: 780  KRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVVHSDWDNTLVGGR 839

Query: 835  IYYSLA-------------AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
             + S A              + G+    A+ I+ A   + F  + D C R     L+ + 
Sbjct: 840  PWRSAADPGEQPAIRLGMRQVAGLSDVVAQRIVAARTQRAFADIGDLCLRA---ALDEKA 896

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
              +L  AGA           LQ +   +  A+W       +   +     G+  ++    
Sbjct: 897  CLALAEAGA-----------LQGMVGNRNAARWAMAGVEARRPLL----PGSPEERPV-- 939

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
             F   ++      + R +G     HP+ + +P +R+  I G  +      G+ + +A +V
Sbjct: 940  AFEAPHAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRDLQGRPHGSGVHVAGLV 999

Query: 1002 VSKQQKKTRKGS 1013
              +Q+  T KG+
Sbjct: 1000 TQRQRPATAKGT 1011


>gi|317405112|gb|EFV85458.1| error-prone DNA polymerase [Achromobacter xylosoxidans C54]
          Length = 1075

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 296/1051 (28%), Positives = 463/1051 (44%), Gaps = 114/1051 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  LQ  S++S L+GA     +  + A     A+AITD  +L   +    +A    + 
Sbjct: 19   PGYAELQCQSNFSFLQGASHPEELAARAAELGYAALAITDECSLAGVVRAHMEAKTQKLP 78

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    +           G    P    + LL  T EGY  L EL++ +      K  
Sbjct: 79   LIIGATFRL---------RAGPEAAPL--DLTLLAQTREGYGNLSELIT-LARTRAPKGE 126

Query: 129  VRICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+          G E L  L    +  I    + +      ++       F  R +V L
Sbjct: 127  YRLAPEDFTAPPPGYEHLRHLPECLA--ILSPVYGDDPDRMAQQARWLAATFPRRAWVGL 184

Query: 187  QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
               +R  D    + V   A   ELP+VA              HD L  +     VSQ   
Sbjct: 185  TLLYRSRDDLHRAAVDHAARAAELPVVALGQVQMHVRSRKPLHDTLTGIRTHQCVSQCGY 244

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-----QVHAPILPRFIEKE 299
                  + +L+ R  + +++   PEAL  T+ +ARRC+F L     +    I+PR     
Sbjct: 245  ALSGNAEQHLRTRMRLANLYP--PEALAQTLVVARRCAFSLDELRYEYPDEIIPR----- 297

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY-RQRLDFELNVIARMKFSGYFL 358
                       LR + +AG   R   G         DY  ++++ EL +IA + +  YFL
Sbjct: 298  ----GHTPATYLRQETLAGAARRFPDGT-------PDYVSEQIEKELALIADLHYEAYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
             V D + +A+ N I +  GRGS A SV  Y L IT++DP R + LFERF++ +R   PD 
Sbjct: 347  TVYDIVLYARNNGI-LCQGRGSAANSVVCYCLGITEVDPRRGNNLFERFISKERNEPPDI 405

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF   RR++VI+Y+  KYG +R A      S + ++ LRD GRAL +    +D + + 
Sbjct: 406  DVDFEHQRREDVIQYIYRKYGRQRAALTAVVISYRPRSVLRDTGRALGVDPGVIDAVAR- 464

Query: 479  IPNDPAHPV---------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
                 AH           +L A   D   + AR       +   ++Q L G  RH S H 
Sbjct: 465  -----AHQWWDGKKEMLRTLGACGLDPESQVAR-------QWAALAQTLMGFPRHLSQHP 512

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G VI    LS+LVP+     +D  V Q++   ++   L+K D L L  L+ L+++L+  
Sbjct: 513  GGFVISRGKLSRLVPIENAAMADRSVVQWDKDDLDALNLLKVDVLALGMLSALRRTLELA 572

Query: 590  AQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q RG  + L  IP  D  TY ++    T+G+FQ+ES      L  ++P    D++  V+
Sbjct: 573  GQRRGQPLRLQDIPEGDDPTYDMICDADTIGVFQIESRAQMTMLPRLRPRKYYDLVVQVA 632

Query: 649  LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            + RPGPI   +V  Y  R+ GKE I      +  +L  T GV I+QEQVMQIA + +G+S
Sbjct: 633  IVRPGPIQGGMVHPYLRRRQGKEDIDYPSDKVKGVLSRTMGVPIFQEQVMQIAVVAAGFS 692

Query: 707  LSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
              EAD LRR+M   K K  +DK + + + G   +  +   A  +F  +  F +YGF +SH
Sbjct: 693  PGEADQLRRSMAAWKRKGGVDKYRAKLVGGLLAHNYTLEFAEALFRQIEGFGEYGFPESH 752

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN--- 822
            AA++A+++Y ++W+K H P  FLAA +  +        +  QDAR+  ++++P  V    
Sbjct: 753  AASFALLAYASSWLKRHEPEAFLAALLNSQPMGFYAPAQLVQDARRHGVRVLPVDVTVSG 812

Query: 823  ------TPCVDFKVGDNR------------IYYSLAAIKGVGTTTARHIMEASADKPFDS 864
                  TP  D     +             +   L+ I+G+   +AR I  A A+ PF S
Sbjct: 813  WDAALETPPADAPPRRSHPHAPSPDETRPAVRLGLSLIQGLHEDSARRIEAARAEAPFTS 872

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              D   R     L R  L +L    AL      R Q           A W  +   + H 
Sbjct: 873  TGDLARRA---ALTRHDLNALAAGDALRTLAGHRRQ-----------ASW--EAAASVHS 916

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                 +      +        EN +V    + R +G     HP+++ +P   ++  + ++
Sbjct: 917  RDLLRDAAIHETEAPRLAAPTENQTV--AADYRSVGLTLRRHPVELLRP---QLAARNFQ 971

Query: 985  ESVATIRGNNIRLA---AMVVSKQQKKTRKG 1012
             + A     + R+A    +V  +Q+ +T KG
Sbjct: 972  PASALNGYPDKRVARACGIVTVRQRPQTSKG 1002


>gi|76580102|gb|ABA49577.1| DNA polymerase III, alpha subunit, form 2 [Burkholderia pseudomallei
            1710b]
          Length = 1084

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 299/1061 (28%), Positives = 466/1061 (43%), Gaps = 127/1061 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 21   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 80

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 81   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 135

Query: 129  VRICLSWLQEIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
             R+    L       L  L G      I    +   + V + +L  F  LFG+R  + L 
Sbjct: 136  YRLTPRMLAAP-PRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLV 194

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            Q  R  D     QV        + +VA  +            D + A+     +++    
Sbjct: 195  QLQRALDGAHREQVRAAGERRGMHIVALGDVAMHIRSCKPLQDTMTAIRLGMPIAECGHA 254

Query: 247  RVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             + P  + +L+ R  +  +F    +AL  T  +   C F L               DD++
Sbjct: 255  -LAPNGEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DDLR 296

Query: 305  KEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             E  +E           L  +  AG   R   G           RQR++FEL +IA +K+
Sbjct: 297  YEYPHEIVPAGHTPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKY 350

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL V D +++A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R 
Sbjct: 351  EPYFLTVYDIVKYARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERG 409

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+
Sbjct: 410  EPPDIDVDFEHQRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVE 469

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAS 526
            R+ K                D SR   AR A    DP V  +    EI+ +L    RH S
Sbjct: 470  RVAK-----------EHRWFDGSRDLLARFASVGLDPEVPLIRTWAEIAARLLNFPRHLS 518

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ 
Sbjct: 519  QHSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAF 578

Query: 587  DFL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            D + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P  
Sbjct: 579  DMITAWRGPPLPDGRPFRLEHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRG 638

Query: 640  IEDIIALVSLYRPGPIDNIVV--YNNRK-----NGKEKIVSIHPLIDPMLKETQGVIIYQ 692
              D++  VS+ RPGPI    V  Y  R+         +I      ++ +L+ T G+ I+Q
Sbjct: 639  YYDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQ 698

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            EQVMQIA + +G++  EAD LRRAM   K K ++ K  ER ++G  + G S+  A  IFE
Sbjct: 699  EQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFE 758

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++
Sbjct: 759  QIKGFGEYGFPESHAASFAKLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKR 818

Query: 812  FNIQIMPPSVNT----------PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
              + ++P               P      G   +   L+ ++G+G   AR I  A A  P
Sbjct: 819  HGVTVLPIDATKSGWEASLEAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGP 878

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F S+++   R     L RR           D    +      +L   ++ A W       
Sbjct: 879  FASVDELARRA---CLERR-----------DLEALAAANAFATLAGNRRDALW------- 917

Query: 922  KHENIFAHEKGTFS----DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL-- 975
                  A E+G  +    D+           +     + R +G   + HP+ + +P L  
Sbjct: 918  -QAVAAAPERGLLAVAPIDEAVRPALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDA 976

Query: 976  RKMGIKGYEESVATIR----GNNIRLAAMVVSKQQKKTRKG 1012
            R++       S A +R    G   R   +V ++Q   T KG
Sbjct: 977  RRL------SSAAALRDRRNGRLARACGLVTARQMPGTAKG 1011


>gi|134279926|ref|ZP_01766638.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 305]
 gi|134249126|gb|EBA49208.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 305]
          Length = 1072

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 298/1059 (28%), Positives = 464/1059 (43%), Gaps = 123/1059 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
             R+    L       L  L G      I    +   + V + +L  F  LFG+R  + L 
Sbjct: 124  YRLTPRMLAAP-PRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLV 182

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            Q  R  D     QV        + +VA  +            D + A+     +++    
Sbjct: 183  QLQRALDGAHREQVRAAGERRGMHIVALGDVAMHIRSCKPLQDTMTAIRLGMPIAECGHA 242

Query: 247  RVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             + P  + +L+ R  +  +F    +AL  T  +   C F L               DD++
Sbjct: 243  -LAPNGEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DDLR 284

Query: 305  KEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             E  +E           L  +  AG   R   G           RQR++FEL +IA +K+
Sbjct: 285  YEYPHEIVPAGHTPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKY 338

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL V D +++A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R 
Sbjct: 339  EPYFLTVYDIVKYARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERG 397

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+
Sbjct: 398  EPPDIDVDFEHQRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVE 457

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAS 526
            R+ K                D SR   AR A    DP V  +    EI+ +L    RH S
Sbjct: 458  RVAK-----------EHRWFDGSRDLLARFASVGLDPEVPLIRTWAEIAARLLNFPRHLS 506

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ 
Sbjct: 507  QHSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAF 566

Query: 587  DFL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            D + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P  
Sbjct: 567  DMITAWRGPPLPDGRPFRLEHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRG 626

Query: 640  IEDIIALVSLYRPGPIDNIVV--YNNRK-----NGKEKIVSIHPLIDPMLKETQGVIIYQ 692
              D++  VS+ RPGPI    V  Y  R+         +I      ++ +L+ T G+ I+Q
Sbjct: 627  YYDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQ 686

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            EQVMQIA + +G++  EAD LRRAM   K K ++ K  ER ++G  + G S+  A  IFE
Sbjct: 687  EQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFE 746

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++
Sbjct: 747  QIKGFGEYGFPESHAASFAKLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKR 806

Query: 812  FNIQIMPPSVNT----------PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
              + ++P               P      G   +   L+ ++G+G   AR I  A A  P
Sbjct: 807  HGVTVLPIDATKSGWEASLEAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGP 866

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F S+++   R     L RR           D    +      +L   ++ A W       
Sbjct: 867  FASVDELARRA---CLERR-----------DLEALAAANAFATLAGNRRDALW------- 905

Query: 922  KHENIFAHEKGTFS----DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                  A E+G  +    D+           +     + R +G   + HP+ + +P L  
Sbjct: 906  -QAVAAAPERGLLAAAPIDEAVRPALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDA 964

Query: 978  MGIKGYEESVATIR----GNNIRLAAMVVSKQQKKTRKG 1012
              +     S A +R    G   R   +V ++Q   T KG
Sbjct: 965  RRLS----SAAALRDRRNGRLARACGLVTARQMPGTAKG 999


>gi|53718111|ref|YP_107097.1| error-prone DNA polymerase [Burkholderia pseudomallei K96243]
 gi|126440547|ref|YP_001057563.1| error-prone DNA polymerase [Burkholderia pseudomallei 668]
 gi|217420209|ref|ZP_03451715.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 576]
 gi|71151821|sp|Q63XR8|DNAE2_BURPS RecName: Full=Error-prone DNA polymerase
 gi|52208525|emb|CAH34461.1| putative DNA polymerase III alpha subunit [Burkholderia pseudomallei
            K96243]
 gi|126220040|gb|ABN83546.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 668]
 gi|217397513|gb|EEC37529.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 576]
          Length = 1072

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 298/1059 (28%), Positives = 464/1059 (43%), Gaps = 123/1059 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
             R+    L       L  L G      I    +   + V + +L  F  LFG+R  + L 
Sbjct: 124  YRLTPRMLAAP-PRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLV 182

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            Q  R  D     QV        + +VA  +            D + A+     +++    
Sbjct: 183  QLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHA 242

Query: 247  RVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             + P  + +L+ R  +  +F    +AL  T  +   C F L               DD++
Sbjct: 243  -LAPNGEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DDLR 284

Query: 305  KEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             E  +E           L  +  AG   R   G           RQR++FEL +IA +K+
Sbjct: 285  YEYPHEIVPAGHTPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKY 338

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL V D +++A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R 
Sbjct: 339  EPYFLTVYDIVKYARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERG 397

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+
Sbjct: 398  EPPDIDVDFEHQRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVE 457

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAS 526
            R+ K                D SR   AR A    DP V  +    EI+ +L    RH S
Sbjct: 458  RVAK-----------EHRWFDGSRDLLARFASVGLDPEVPLIRTWAEIAARLLNFPRHLS 506

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ 
Sbjct: 507  QHSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAF 566

Query: 587  DFL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            D + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P  
Sbjct: 567  DMITAWRGPPLPDGRPFRLEHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRG 626

Query: 640  IEDIIALVSLYRPGPIDNIVV--YNNRK-----NGKEKIVSIHPLIDPMLKETQGVIIYQ 692
              D++  VS+ RPGPI    V  Y  R+         +I      ++ +L+ T G+ I+Q
Sbjct: 627  YYDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQ 686

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            EQVMQIA + +G++  EAD LRRAM   K K ++ K  ER ++G  + G S+  A  IFE
Sbjct: 687  EQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFE 746

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++
Sbjct: 747  QIKGFGEYGFPESHAASFAKLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKR 806

Query: 812  FNIQIMPPSVNT----------PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
              + ++P               P      G   +   L+ ++G+G   AR I  A A  P
Sbjct: 807  HGVTVLPIDATKSGWEASLEAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGP 866

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F S+++   R     L RR           D    +      +L   ++ A W       
Sbjct: 867  FASVDELARRA---CLERR-----------DLEALAAANAFATLAGNRRDALW------- 905

Query: 922  KHENIFAHEKGTFS----DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                  A E+G  +    D+           +     + R +G   + HP+ + +P L  
Sbjct: 906  -QAVAAAPERGLLAAAPIDEAVRPALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDA 964

Query: 978  MGIKGYEESVATIR----GNNIRLAAMVVSKQQKKTRKG 1012
              +     S A +R    G   R   +V ++Q   T KG
Sbjct: 965  RRLS----SAAALRDRRNGRLARACGLVTARQMPGTAKG 999


>gi|167909389|ref|ZP_02496480.1| error-prone DNA polymerase [Burkholderia pseudomallei 112]
 gi|254196425|ref|ZP_04902849.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei S13]
 gi|169653168|gb|EDS85861.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei S13]
          Length = 1072

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 298/1059 (28%), Positives = 464/1059 (43%), Gaps = 123/1059 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
             R+    L       L  L G      I    +   + V + +L  F  LFG+R  + L 
Sbjct: 124  YRLTPRMLAAP-PRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLV 182

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            Q  R  D     QV        + +VA  +            D + A+     +++    
Sbjct: 183  QLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHA 242

Query: 247  RVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             + P  + +L+ R  +  +F    +AL  T  +   C F L               DD++
Sbjct: 243  -LAPNGEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DDLR 284

Query: 305  KEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             E  +E           L  +  AG   R   G           RQR++FEL +IA +K+
Sbjct: 285  YEYPHEIVPAGHTPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKY 338

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL V D +++A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R 
Sbjct: 339  EPYFLTVYDIVKYARNKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERG 397

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+
Sbjct: 398  EPPDIDVDFEHQRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVE 457

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAS 526
            R+ K                D SR   AR A    DP V  +    EI+ +L    RH S
Sbjct: 458  RVAK-----------EHRWFDGSRDLLARFASVGLDPEVPLIRTWAEIAARLLNFPRHLS 506

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ 
Sbjct: 507  QHSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAF 566

Query: 587  DFL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            D + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P  
Sbjct: 567  DMITAWRGPPLPDGRPFRLEHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRG 626

Query: 640  IEDIIALVSLYRPGPIDNIVV--YNNRK-----NGKEKIVSIHPLIDPMLKETQGVIIYQ 692
              D++  VS+ RPGPI    V  Y  R+         +I      ++ +L+ T G+ I+Q
Sbjct: 627  YYDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQ 686

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            EQVMQIA + +G++  EAD LRRAM   K K ++ K  ER ++G  + G S+  A  IFE
Sbjct: 687  EQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFE 746

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++
Sbjct: 747  QIKGFGEYGFPESHAASFAKLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKR 806

Query: 812  FNIQIMPPSVNT----------PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
              + ++P               P      G   +   L+ ++G+G   AR I  A A  P
Sbjct: 807  HGVTVLPIDATKSGWEASLEAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGP 866

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F S+++   R     L RR           D    +      +L   ++ A W       
Sbjct: 867  FASVDELARRA---CLERR-----------DLEALAAANAFATLAGNRRDALW------- 905

Query: 922  KHENIFAHEKGTFS----DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                  A E+G  +    D+           +     + R +G   + HP+ + +P L  
Sbjct: 906  -QAVAAAPERGLLAAAPIDEAVRPALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDA 964

Query: 978  MGIKGYEESVATIR----GNNIRLAAMVVSKQQKKTRKG 1012
              +     S A +R    G   R   +V ++Q   T KG
Sbjct: 965  RRLS----SAAALRDRRNGRLARACGLVTARQMPGTAKG 999


>gi|126453110|ref|YP_001064810.1| error-prone DNA polymerase [Burkholderia pseudomallei 1106a]
 gi|242317426|ref|ZP_04816442.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106b]
 gi|126226752|gb|ABN90292.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106a]
 gi|242140665|gb|EES27067.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106b]
          Length = 1072

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 298/1059 (28%), Positives = 464/1059 (43%), Gaps = 123/1059 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
             R+    L       L  L G      I    +   + V + +L  F  LFG+R  + L 
Sbjct: 124  YRLTPRMLAAP-PRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLV 182

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            Q  R  D     QV        + +VA  +            D + A+     +++    
Sbjct: 183  QLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHA 242

Query: 247  RVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             + P  + +L+ R  +  +F    +AL  T  +   C F L               DD++
Sbjct: 243  -LAPNGEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DDLR 284

Query: 305  KEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             E  +E           L  +  AG   R   G           RQR++FEL +IA +K+
Sbjct: 285  YEYPHEIVPAGHTSTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKY 338

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL V D +++A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R 
Sbjct: 339  EPYFLTVYDIVKYARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERG 397

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+
Sbjct: 398  EPPDIDVDFEHQRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVE 457

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAS 526
            R+ K                D SR   AR A    DP V  +    EI+ +L    RH S
Sbjct: 458  RVAK-----------EHRWFDGSRDLLARFASVGLDPEVPLIRTWAEIAARLLNFPRHLS 506

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ 
Sbjct: 507  QHSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAF 566

Query: 587  DFL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            D + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P  
Sbjct: 567  DMITAWRGPPLPDGRPFRLEHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRG 626

Query: 640  IEDIIALVSLYRPGPIDNIVV--YNNRK-----NGKEKIVSIHPLIDPMLKETQGVIIYQ 692
              D++  VS+ RPGPI    V  Y  R+         +I      ++ +L+ T G+ I+Q
Sbjct: 627  YYDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQ 686

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            EQVMQIA + +G++  EAD LRRAM   K K ++ K  ER ++G  + G S+  A  IFE
Sbjct: 687  EQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFE 746

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++
Sbjct: 747  QIKGFGEYGFPESHAASFAKLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKR 806

Query: 812  FNIQIMPPSVNT----------PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
              + ++P               P      G   +   L+ ++G+G   AR I  A A  P
Sbjct: 807  HGVTVLPIDATKSGWEASLEAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGP 866

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F S+++   R     L RR           D    +      +L   ++ A W       
Sbjct: 867  FASVDELARRA---CLERR-----------DLEALAAANAFATLAGNRRDALW------- 905

Query: 922  KHENIFAHEKGTFS----DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                  A E+G  +    D+           +     + R +G   + HP+ + +P L  
Sbjct: 906  -QAVAAAPERGLLAAAPIDEAVRPALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDA 964

Query: 978  MGIKGYEESVATIR----GNNIRLAAMVVSKQQKKTRKG 1012
              +     S A +R    G   R   +V ++Q   T KG
Sbjct: 965  RRLS----SAAALRDRRNGRLARACGLVTARQMPGTAKG 999


>gi|162210057|ref|YP_332106.2| error-prone DNA polymerase [Burkholderia pseudomallei 1710b]
 gi|254261216|ref|ZP_04952270.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1710a]
 gi|254219905|gb|EET09289.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1710a]
          Length = 1072

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 298/1059 (28%), Positives = 464/1059 (43%), Gaps = 123/1059 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
             R+    L       L  L G      I    +   + V + +L  F  LFG+R  + L 
Sbjct: 124  YRLTPRMLAAP-PRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLV 182

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            Q  R  D     QV        + +VA  +            D + A+     +++    
Sbjct: 183  QLQRALDGAHREQVRAAGERRGMHIVALGDVAMHIRSCKPLQDTMTAIRLGMPIAECGHA 242

Query: 247  RVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             + P  + +L+ R  +  +F    +AL  T  +   C F L               DD++
Sbjct: 243  -LAPNGEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DDLR 284

Query: 305  KEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             E  +E           L  +  AG   R   G           RQR++FEL +IA +K+
Sbjct: 285  YEYPHEIVPAGHTPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKY 338

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL V D +++A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R 
Sbjct: 339  EPYFLTVYDIVKYARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERG 397

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+
Sbjct: 398  EPPDIDVDFEHQRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVE 457

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAS 526
            R+ K                D SR   AR A    DP V  +    EI+ +L    RH S
Sbjct: 458  RVAK-----------EHRWFDGSRDLLARFASVGLDPEVPLIRTWAEIAARLLNFPRHLS 506

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ 
Sbjct: 507  QHSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAF 566

Query: 587  DFL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            D + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P  
Sbjct: 567  DMITAWRGPPLPDGRPFRLEHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRG 626

Query: 640  IEDIIALVSLYRPGPIDNIVV--YNNRK-----NGKEKIVSIHPLIDPMLKETQGVIIYQ 692
              D++  VS+ RPGPI    V  Y  R+         +I      ++ +L+ T G+ I+Q
Sbjct: 627  YYDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQ 686

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            EQVMQIA + +G++  EAD LRRAM   K K ++ K  ER ++G  + G S+  A  IFE
Sbjct: 687  EQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFE 746

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++
Sbjct: 747  QIKGFGEYGFPESHAASFAKLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKR 806

Query: 812  FNIQIMPPSVNT----------PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
              + ++P               P      G   +   L+ ++G+G   AR I  A A  P
Sbjct: 807  HGVTVLPIDATKSGWEASLEAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGP 866

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F S+++   R     L RR           D    +      +L   ++ A W       
Sbjct: 867  FASVDELARRA---CLERR-----------DLEALAAANAFATLAGNRRDALW------- 905

Query: 922  KHENIFAHEKGTFS----DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                  A E+G  +    D+           +     + R +G   + HP+ + +P L  
Sbjct: 906  -QAVAAAPERGLLAVAPIDEAVRPALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDA 964

Query: 978  MGIKGYEESVATIR----GNNIRLAAMVVSKQQKKTRKG 1012
              +     S A +R    G   R   +V ++Q   T KG
Sbjct: 965  RRLS----SAAALRDRRNGRLARACGLVTARQMPGTAKG 999


>gi|167917420|ref|ZP_02504511.1| error-prone DNA polymerase [Burkholderia pseudomallei BCC215]
          Length = 1072

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 298/1059 (28%), Positives = 464/1059 (43%), Gaps = 123/1059 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
             R+    L       L  L G      I    +   + V + +L  F  LFG+R  + L 
Sbjct: 124  YRLTPRMLAAP-PRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLV 182

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            Q  R  D     QV        + +VA  +            D + A+     +++    
Sbjct: 183  QLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHA 242

Query: 247  RVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             + P  + +L+ R  +  +F    +AL  T  +   C F L               DD++
Sbjct: 243  -LAPNGEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DDLR 284

Query: 305  KEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             E  +E           L  +  AG   R   G           RQR++FEL +IA +K+
Sbjct: 285  YEYPHEIVPAGHTPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKY 338

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL V D +++A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R 
Sbjct: 339  EPYFLTVYDIVKYARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERG 397

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+
Sbjct: 398  EPPDIDVDFEHQRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVE 457

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAS 526
            R+ K                D SR   AR A    DP V  +    EI+ +L    RH S
Sbjct: 458  RVAK-----------EHRWFDGSRDLLARFASVGLDPEVPLIRTWAEIAARLLNFPRHLS 506

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ 
Sbjct: 507  QHSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAF 566

Query: 587  DFL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            D + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P  
Sbjct: 567  DMITAWRGPPLPDGRPFRLEHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRG 626

Query: 640  IEDIIALVSLYRPGPIDNIVV--YNNRK-----NGKEKIVSIHPLIDPMLKETQGVIIYQ 692
              D++  VS+ RPGPI    V  Y  R+         +I      ++ +L+ T G+ I+Q
Sbjct: 627  YYDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQ 686

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            EQVMQIA + +G++  EAD LRRAM   K K ++ K  ER ++G  + G S+  A  IFE
Sbjct: 687  EQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFE 746

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++
Sbjct: 747  QIKGFGEYGFPESHAASFAKLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKR 806

Query: 812  FNIQIMPPSVNT----------PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
              + ++P               P      G   +   L+ ++G+G   AR I  A A  P
Sbjct: 807  HGVTVLPIDATKSGWEASLEAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGP 866

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F S+++   R     L RR           D    +      +L   ++ A W       
Sbjct: 867  FASVDELARRA---CLERR-----------DLEALAAANAFATLAGNRRDALW------- 905

Query: 922  KHENIFAHEKGTFS----DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                  A E+G  +    D+           +     + R +G   + HP+ + +P L  
Sbjct: 906  -QAVAAAPERGLLAAAPIDEAVRPALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDA 964

Query: 978  MGIKGYEESVATIR----GNNIRLAAMVVSKQQKKTRKG 1012
              +     S A +R    G   R   +V ++Q   T KG
Sbjct: 965  RRLS----SAAALRERRNGRLARACGLVTARQMPGTAKG 999


>gi|188577888|ref|YP_001914817.1| error-prone DNA polymerase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|254777929|sp|B2SI43|DNAE2_XANOP RecName: Full=Error-prone DNA polymerase
 gi|188522340|gb|ACD60285.1| error-prone DNA polymerase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 1083

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 276/1032 (26%), Positives = 469/1032 (45%), Gaps = 93/1032 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + +   G++
Sbjct: 46   PTYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRVTGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +    + D  +               VLLV  A GY ++  LV+        +++
Sbjct: 106  LIVGSEFT--LIDGTR--------------FVLLVENAHGYPQVCGLVT------TARRA 143

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                   L     E           P   A +    Q   ++    +++FG+R ++ ++ 
Sbjct: 144  ASKGAYRLGRADVEAQFR----DVAPGVFALWLPGVQPQAEQGAWLQQVFGERAFLAVEL 199

Query: 189  HRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D     QV+Q LA    +  VA+ +       +    D L A+ H+  +++     
Sbjct: 200  HREQDDGARLQVLQALAQQLGMTAVASGDVHMAQRRERIVQDTLTAIRHTLPLAECGAHL 259

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  + +I+ D    L+  V +A+RC+F +   +   PR +  E       
Sbjct: 260  FRNGERHLRTRRALGNIYPD--ALLQAAVALAQRCTFDISKISYTYPRELVPE----GHT 313

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR    AG+  R   G  AK       R+ ++ EL +IA  K+  +FL V D +++
Sbjct: 314  PTSYLRQLTEAGIRKRWPGGITAK------VREDIEKELALIALKKYEAFFLTVQDVVRF 367

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++ NI +  GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF  +R
Sbjct: 368  AREQNI-LCQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHER 426

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAH 485
            R+EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L       +   
Sbjct: 427  REEVLQYVYRKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGET 486

Query: 486  PVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            P+       + R  EA   LA+P ++++L +++ L    RH S H  G VI D PLS LV
Sbjct: 487  PM-------EQRIEEAGFDLANPLINKILLVTEHLRDHPRHLSQHVGGFVISDEPLSLLV 539

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
            P+     +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P
Sbjct: 540  PVENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYSIATLP 599

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  
Sbjct: 600  GEDLPTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHP 659

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+ G+E +    P ++ +LK T GV ++QEQVM++    + Y+ SEAD LRR+M   
Sbjct: 660  YLRRRQGREDVSYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYTESEADNLRRSMAAW 719

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            +   +M++ + R        G + T    IFE +  F  YGF +SHAA++A + Y + W+
Sbjct: 720  RRGGDMEQHRTRVRERMQGKGYASTFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWL 779

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-----IQIMPPSVNTPCVDFKVGDNR 834
            K H P  F    +  +        +  QDAR+ +     ++++P  V     D  +   R
Sbjct: 780  KRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVVHSDWDNTLVGGR 839

Query: 835  IYYSLA-------------AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
             + S A              + G+    A+ I+ A   + F  + D C R     L+ + 
Sbjct: 840  PWRSAADPGEQPAIRLGMRQVAGLSDVVAQRIVAARTQRAFADIGDLCLRA---ALDEKA 896

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
              +L  AGA           LQ +   +  A+W       +   +     G+  ++    
Sbjct: 897  RLALAEAGA-----------LQGMVGNRNAARWAMAGVEARRPLL----PGSPEERPV-- 939

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
             F   ++      + R +G     HP+ + +P +R+  I G  +      G+ + +A +V
Sbjct: 940  AFEAPHAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRDLQGRPHGSGVHVAGLV 999

Query: 1002 VSKQQKKTRKGS 1013
              +Q+  T KG+
Sbjct: 1000 TQRQRPATAKGT 1011


>gi|254187853|ref|ZP_04894365.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pasteur
            52237]
 gi|254296029|ref|ZP_04963486.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 406e]
 gi|157806301|gb|EDO83471.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 406e]
 gi|157935533|gb|EDO91203.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pasteur
            52237]
          Length = 1075

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 299/1061 (28%), Positives = 466/1061 (43%), Gaps = 127/1061 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 12   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 71

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 72   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 126

Query: 129  VRICLSWLQEIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
             R+    L       L  L G      I    +   + V + +L  F  LFG+R  + L 
Sbjct: 127  YRLTPRMLAAP-PRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLV 185

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            Q  R  D     QV        + +VA  +            D + A+     +++    
Sbjct: 186  QLQRALDGAHREQVRAAGERRGMHIVALGDVAMHIRSCKPLQDTMTAIRLGMPIAECGHA 245

Query: 247  RVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             + P  + +L+ R  +  +F    +AL  T  +   C F L               DD++
Sbjct: 246  -LAPNGEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DDLR 287

Query: 305  KEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             E  +E           L  +  AG   R   G           RQR++FEL +IA +K+
Sbjct: 288  YEYPHEIVPAGHTPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKY 341

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL V D +++A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R 
Sbjct: 342  EPYFLTVYDIVKYARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERG 400

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+
Sbjct: 401  EPPDIDVDFEHQRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVE 460

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAS 526
            R+ K                D SR   AR A    DP V  +    EI+ +L    RH S
Sbjct: 461  RVAK-----------EHRWFDGSRDLLARFASVGLDPEVPLIRTWAEIAARLLNFPRHLS 509

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ 
Sbjct: 510  QHSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAF 569

Query: 587  DFL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            D + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P  
Sbjct: 570  DMITAWRGPPLPDGRPFRLEHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRG 629

Query: 640  IEDIIALVSLYRPGPIDNIVV--YNNRK-----NGKEKIVSIHPLIDPMLKETQGVIIYQ 692
              D++  VS+ RPGPI    V  Y  R+         +I      ++ +L+ T G+ I+Q
Sbjct: 630  YYDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQ 689

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            EQVMQIA + +G++  EAD LRRAM   K K ++ K  ER ++G  + G S+  A  IFE
Sbjct: 690  EQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFE 749

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++
Sbjct: 750  QIKGFGEYGFPESHAASFAKLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKR 809

Query: 812  FNIQIMPPSVNT----------PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
              + ++P               P      G   +   L+ ++G+G   AR I  A A  P
Sbjct: 810  HGVTVLPIDATKSGWEASLEAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGP 869

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F S+++   R     L RR           D    +      +L   ++ A W       
Sbjct: 870  FASVDELARRA---CLERR-----------DLEALAAANAFATLAGNRRDALW------- 908

Query: 922  KHENIFAHEKGTFS----DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL-- 975
                  A E+G  +    D+           +     + R +G   + HP+ + +P L  
Sbjct: 909  -QAVAAAPERGLLAVAPIDEAVRPALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDA 967

Query: 976  RKMGIKGYEESVATIR----GNNIRLAAMVVSKQQKKTRKG 1012
            R++       S A +R    G   R   +V ++Q   T KG
Sbjct: 968  RRL------SSAAALRDRRNGRLARACGLVTARQMPGTAKG 1002


>gi|53724334|ref|YP_104628.1| error-prone DNA polymerase [Burkholderia mallei ATCC 23344]
 gi|67643462|ref|ZP_00442208.1| DNA polymerase III, alpha subunit [Burkholderia mallei GB8 horse 4]
 gi|121599722|ref|YP_991465.1| error-prone DNA polymerase [Burkholderia mallei SAVP1]
 gi|124384859|ref|YP_001027457.1| error-prone DNA polymerase [Burkholderia mallei NCTC 10229]
 gi|126448927|ref|YP_001082423.1| error-prone DNA polymerase [Burkholderia mallei NCTC 10247]
 gi|167001206|ref|ZP_02267005.1| DNA polymerase III, alpha subunit [Burkholderia mallei PRL-20]
 gi|254174862|ref|ZP_04881523.1| DNA polymerase III, alpha subunit [Burkholderia mallei ATCC 10399]
 gi|254207050|ref|ZP_04913401.1| DNA polymerase III, alpha subunit [Burkholderia mallei JHU]
 gi|254357531|ref|ZP_04973805.1| DNA polymerase III, alpha subunit [Burkholderia mallei 2002721280]
 gi|71151820|sp|Q62F99|DNAE2_BURMA RecName: Full=Error-prone DNA polymerase
 gi|52427757|gb|AAU48350.1| DNA polymerase III, alpha subunit, form 2 [Burkholderia mallei ATCC
           23344]
 gi|121228532|gb|ABM51050.1| DNA polymerase III, alpha subunit, form 2 [Burkholderia mallei
           SAVP1]
 gi|124292879|gb|ABN02148.1| DNA polymerase III, alpha subunit [Burkholderia mallei NCTC 10229]
 gi|126241797|gb|ABO04890.1| DNA polymerase III, alpha subunit [Burkholderia mallei NCTC 10247]
 gi|147752592|gb|EDK59658.1| DNA polymerase III, alpha subunit [Burkholderia mallei JHU]
 gi|148026595|gb|EDK84680.1| DNA polymerase III, alpha subunit [Burkholderia mallei 2002721280]
 gi|160695907|gb|EDP85877.1| DNA polymerase III, alpha subunit [Burkholderia mallei ATCC 10399]
 gi|238524817|gb|EEP88248.1| DNA polymerase III, alpha subunit [Burkholderia mallei GB8 horse 4]
 gi|243062927|gb|EES45113.1| DNA polymerase III, alpha subunit [Burkholderia mallei PRL-20]
          Length = 1063

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 271/911 (29%), Positives = 418/911 (45%), Gaps = 89/911 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
            R+    L       L  L G      I    +   + V + +L  F  LFG+R  + L 
Sbjct: 124 YRLTPRMLAAP-PRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLV 182

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
           Q  R  D     QV        + +VA  +            D + A+     +++    
Sbjct: 183 QLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHA 242

Query: 247 RVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            + P  + +L+ R  +  +F    +AL  T  +   C F L               DD++
Sbjct: 243 -LAPNGEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DDLR 284

Query: 305 KEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            E  +E           L  +  AG   R   G           RQR++FEL +IA +K+
Sbjct: 285 YEYPHEIVPAGHTPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKY 338

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             YFL V D +++A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R 
Sbjct: 339 EPYFLTVYDIVKYARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERG 397

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
             PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+
Sbjct: 398 EPPDIDVDFEHQRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVE 457

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAS 526
           R+ K                D SR   AR A    DP V  +    EI+ +L    RH S
Sbjct: 458 RVAK-----------EHRWFDGSRDLLARFASVGLDPEVPLIRTWAEIAARLLNFPRHLS 506

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ 
Sbjct: 507 QHSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAF 566

Query: 587 DFL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
           D + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P  
Sbjct: 567 DMITAWRGPPLPDGRPFRLEHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRG 626

Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRK-----NGKEKIVSIHPLIDPMLKETQGVIIYQ 692
             D++  VS+ RPGPI    V  Y  R+         +I      ++ +L+ T G+ I+Q
Sbjct: 627 YYDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQ 686

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           EQVMQIA + +G++  EAD LRRAM   K K ++ K  ER ++G  + G S+  A  IFE
Sbjct: 687 EQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFE 746

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++
Sbjct: 747 QIKGFGEYGFPESHAASFAKLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKR 806

Query: 812 FNIQIMPPSVNT----------PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
             + ++P               P      G   +   L+ ++G+G   AR I  A A  P
Sbjct: 807 HGVTVLPIDATKSGWEASLEAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGP 866

Query: 862 FDSLEDFCSRV 872
           F S+++   R 
Sbjct: 867 FASVDELARRA 877


>gi|38233219|ref|NP_938986.1| error-prone DNA polymerase [Corynebacterium diphtheriae NCTC 13129]
 gi|71151822|sp|Q6NJ04|DNAE2_CORDI RecName: Full=Error-prone DNA polymerase
 gi|38199478|emb|CAE49129.1| Putative DNA polymerase [Corynebacterium diphtheriae]
          Length = 1039

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 274/949 (28%), Positives = 431/949 (45%), Gaps = 168/949 (17%)

Query: 3   QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           +Y    P F  L   S Y  L GA S  +++         A+A+ D +  + A+EF++ A
Sbjct: 46  RYYSSQP-FAELHAASYYHFLHGANSPQDMVAAACQQGMSALALIDRDGFYGAMEFAEAA 104

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
             +G+  + G +L +     L +  +G                 EGY  L  L+++  + 
Sbjct: 105 ATSGLPTVFGAELTLAPDRILTVLARG----------------VEGYTSLSRLITQARM- 147

Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +G + V I     + + + G            +  F  N S   ++ LL   ++F    
Sbjct: 148 -RGSKDVTIYPPLAEIVESMGK-----------NCRFLLNHSWCTDESLL---EIF---- 188

Query: 183 YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL---------MA 233
                       Y ++ V++   T             +  ED + H++L         MA
Sbjct: 189 ------------YPDTVVLEYGVT-------------MRPEDVDHHELLDSIRQRYGFMA 223

Query: 234 VAHSTVVSQKDR------------------PRVTP------DHYLKNRSEMVSIFSDLPE 269
           +A S V S  DR                  P+ TP        +++   E+        +
Sbjct: 224 IA-SAVPSAVDRVSARVAGAKQALAQRESLPQATPRLHPMGSTWMRGGDELAGSVDK--Q 280

Query: 270 ALENTVEIARRCSFILQVHAPILPRF------------IEKECDDIQKEEENELRNKAVA 317
            L+ +VE+AR C+F L + AP LPR+            +    D   +    +++N+A  
Sbjct: 281 LLDASVEVARDCAFALDLVAPNLPRWPVPDEMAHLTGLVNARFDARYRGRSEDVKNQA-- 338

Query: 318 GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
                               R ++  EL VI  + F GYFLIV D + +   NNI +  G
Sbjct: 339 --------------------RAQIHHELAVIKELGFPGYFLIVDDIVSFCHTNNI-LCQG 377

Query: 378 RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
           RGS A SV  + L IT+++P+   LLFERFL+ DR   PD DID    RRD VI YV + 
Sbjct: 378 RGSAANSVVCFVLGITNVEPISTGLLFERFLSRDREGPPDIDIDIESGRRDAVITYVYDT 437

Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
           YG +  AQ+    + + KAALRD  RAL  P +  D        +P          D++ 
Sbjct: 438 YGRDNAAQVANVITYRTKAALRDAARALGYPNTSADAWS----TNP----------DEA- 482

Query: 498 FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
                   P+  R L  +++L+G  RH   HA G+VI DRP++ +VP     +    V Q
Sbjct: 483 --------PNAVRFL--AEQLKGQPRHLGIHAGGMVICDRPIADVVPTEWARKHGRSVVQ 532

Query: 558 FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKG 616
           ++ +    AGL+KFD LGL  L  L   +D + +  G  ++L  I   + E Y +L+   
Sbjct: 533 WDKESCASAGLVKFDLLGLGMLEALHHMIDLVVETTGTTINLWEIDLAEPEIYTMLSNGD 592

Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSI 674
            +G+FQ+ES      L  ++P    D++  V+L RPGPI    V  Y  R+NG E +   
Sbjct: 593 AVGVFQVESRAQLATLPRLRPREFFDLVVEVALVRPGPIQGGSVHPYIRRRNGLEAVTYE 652

Query: 675 HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFI 733
           HP+++  L++T GV ++QEQ+M IA   +G+S  EAD LRRAMG ++  + M++ K RF 
Sbjct: 653 HPILERSLRKTLGVPLFQEQLMHIAVDAAGFSGGEADELRRAMGSRRSVDTMNRMKRRFF 712

Query: 734 SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
           +G  +N I+  IA  ++  +  F  YGF +SH+ ++A + Y +AW K H+P EF    + 
Sbjct: 713 AGLRRNNITGDIAGILWNKIVAFVAYGFPESHSQSFASLVYFSAWFKYHHPAEFYVGLLR 772

Query: 794 LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
            +       +    DAR+  + I+  ++N   V+  V +  I   L  IKGVG T A  I
Sbjct: 773 AQPMGFYSPQSLLADARRKELTILSHNINKSQVEATVENGAIRLGLNMIKGVGKTEAEAI 832

Query: 854 MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
           +   A  P+  + D   R     L   V+E+L  +GAL+  G  R Q L
Sbjct: 833 V---AHAPYRDIADLSRRAG---LGVAVIEALARSGALETLGVGRRQAL 875


>gi|220925004|ref|YP_002500306.1| DNA polymerase III subunit alpha [Methylobacterium nodulans ORS 2060]
 gi|219949611|gb|ACL60003.1| DNA polymerase III, alpha subunit [Methylobacterium nodulans ORS
            2060]
          Length = 1072

 Score =  338 bits (866), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 279/1019 (27%), Positives = 455/1019 (44%), Gaps = 71/1019 (6%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQV + YS L GA S   +    A     A+ +TD +++   ++  + A A G + + 
Sbjct: 3    VELQVTTHYSFLRGASSPEELFTTAALLGLTALGVTDRHSVAGLVKAHEAARATGCRLVA 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+LD+   D      QG        ++++  +    Y RL  L++ +     GK    +
Sbjct: 63   GCRLDLSGPD------QGT-------ALLVYPTDRAAYGRLCRLLT-LGKERAGKGGCTL 108

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                + E  +EGLI +               S      RL   K +FG   +  L R  G
Sbjct: 109  DFGDVAEW-SEGLIAVL----------LTDKSDDALAARLGRLKGIFGRHSFCALTRRFG 157

Query: 192  YDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD--RPRV 248
             + +R  + +  LA    +P+VAT + L+   E     DV+  +   T +      R R 
Sbjct: 158  VNDHRRLEGIADLARAARVPIVATGDVLYHVPERRLMQDVVTCIRLGTTIEAAGFARERH 217

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
               H L+  +E   +F+  PEA+E    IA  C F L       P     E  +  +  +
Sbjct: 218  AGRH-LQPPAETARLFARHPEAVERAQAIAESCRFSLDDLTYTYP----DETGEDGRSAQ 272

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L    +AG   R   G        ++ R+++  EL++IA   ++ YFL V   +++A+
Sbjct: 273  ERLEAMTLAGAAQRFPGGI------PENVREQIRHELDLIASKTYAPYFLTVEAIVRFAR 326

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I +  GRGS A SV  + L IT IDP+R  LLFERF++ +R   PD D+DF  DRR+
Sbjct: 327  DQGI-LCQGRGSAANSVVCFCLGITAIDPVRLKLLFERFVSDNRDEPPDIDVDFEHDRRE 385

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN---DPAH 485
            EVI++V   YG  R A   T     A+ A+R+VG+ L +P      L +L+     D A 
Sbjct: 386  EVIQWVYATYGRHRAALTATVIRYGARGAVREVGKVLGVPEDVTGALARLVSGWSRDGAG 445

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                +A+  +   R  RL        L+I++ L G  RH   H  G V+    L +L P+
Sbjct: 446  EREAEALNLNLSDRRLRLT-------LDIAKALIGTPRHLGQHPGGFVLTLDRLDELCPI 498

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK---VDLSLI 601
                  +    +++   IE    +K D LGL  L  L+++   L + RG +    D++ I
Sbjct: 499  TPATMENRQTIEWDKDDIEALKFMKVDVLGLGMLGCLRRAFALLKEHRGDENPPQDIAGI 558

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY ++    TLG+FQ+ES      L  MQP  + D+   V+L RPGPI  D + 
Sbjct: 559  PPEDAATYAMIGKADTLGVFQIESRAQMAMLPRMQPKHLYDLTIEVALVRPGPIQGDMVH 618

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+  +  +      +  +L+ T GV ++QEQ MQ+A + +G++ +EAD LRRAM  
Sbjct: 619  PYLRRRQNRSLVHYPSEALKSVLERTLGVPLFQEQAMQVAIVAAGFTAAEADGLRRAMAT 678

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K   ++   +++ I+G  +NG +   A   F  L  F  YGF +SHAA++A+++Y ++W
Sbjct: 679  FKANGKIGLYRDKLIAGMIRNGYTPDFAARTFRQLEGFGSYGFPESHAASFALLAYASSW 738

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--FKVGDNRIY 836
            +K H+P  F  A +  +        +  +DAR+  + + P  VN    D   +    R+ 
Sbjct: 739  LKCHHPDVFACALLNAQPMGFYAPAQIVRDARRHGVPVRPIDVNASRWDCTLEPAQGRLM 798

Query: 837  ---YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
                 L  ++G+G      I        F S+ED   R     +  + LE L  A A   
Sbjct: 799  ALRLGLRLVRGLGNAEGARIATVREADLFRSVEDLWRRA---AVPLKALEHLAAADAFRS 855

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
             G  R + L ++  +      +      +   I    +    +         E ++V   
Sbjct: 856  LGLGRREALWAIKGLAPLPLPLFAAADAREAAI----RPELDEPAVALAPMPEGAAV--V 909

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             + R  G     HP+   +P L + GI           G  + +A +V+ +Q+  + KG
Sbjct: 910  ADYRASGLSLGRHPVAFLRPDLARDGISACAALKRLRDGARVTVAGLVLVRQKPGSAKG 968


>gi|257094455|ref|YP_003168096.1| DNA polymerase III subunit alpha [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046979|gb|ACV36167.1| DNA polymerase III, alpha subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1042

 Score =  338 bits (866), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 263/898 (29%), Positives = 428/898 (47%), Gaps = 89/898 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA     ++++  A    A+AITD  +L   +   + A   G+Q
Sbjct: 6   PFYAELHCCSNFSFLRGASHPEELVERAQALGYSALAITDEASLAGVVRAHKAARERGLQ 65

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG +         ++T+  + P      +VLL     GY  L  L++ +      K  
Sbjct: 66  LIIGAEF--------RLTD-ARQPGS---RLVLLAQNRAGYGNLSALIT-LARRRSAKGE 112

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA------EKRLLTFKKLFGDRL 182
            R+   +  +     L+ L  G+  P   A +   +         E R L  +  F +R 
Sbjct: 113 YRL---YRNDFEKPDLVALRSGAL-PDCLALWIADADADTDASAEEGRWLASR--FPNRS 166

Query: 183 YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVV 240
           ++ ++ H G D   R + +++LA    LP VA  +            D L A+  ++T+ 
Sbjct: 167 WLAVELHSGPDDAARLATLLELAKASGLPAVAAGDVHMHLRARRPLQDTLTAIRLYTTLF 226

Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
           +         + +L+ R  +  I+    E L  T+ +A RC F L               
Sbjct: 227 AAGHALFANGERHLRTRLRLARIYPA--ELLAATLLVAARCHFSL--------------- 269

Query: 301 DDIQKEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
           D+++ E  +E           LR +   GL  R     +  G      R R++ EL +I 
Sbjct: 270 DELRYEYPDEMVPDGQTPATFLRAEVTEGLRRRYPD-VVPPGV-----RARVEHELALIN 323

Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            + +  YFL V D + +A+  +I +  GRGS A S   Y L IT++DP R +LLFERF++
Sbjct: 324 ELAYEPYFLTVYDIVNFARSRHI-LCQGRGSAANSAVCYCLGITEVDPARSNLLFERFIS 382

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            +R   PD D+DF  +RR+EVI+Y+  KYG ER A      + + + ALRDVGRAL    
Sbjct: 383 RERGEPPDIDVDFEHERREEVIQYLYAKYGRERAALTAAVVTYRTRGALRDVGRALGFGS 442

Query: 470 SQVDRLCKLIP---NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
           +Q+D L   +         P  L+A+  D        A P V + L ++  L G  RH S
Sbjct: 443 AQIDALTASLAWWDKRDQLPGRLRAVGLDP-------AAPRVAKWLALADALRGFPRHLS 495

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            H  G VI   PL++LVP+         V Q++   ++  GL+K D L L  L+ + ++L
Sbjct: 496 QHVGGFVISRGPLARLVPIENAAMPARTVIQWDKDDLDTLGLLKIDVLALGMLSAIHRAL 555

Query: 587 DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
           D +  R     L  +P +D   Y ++    T+G+FQ+ES      L  ++P    D++  
Sbjct: 556 DLVGCR-----LPEVPAEDPAVYDMICAADTVGVFQIESRAQMAMLPRLRPRNFYDLVIE 610

Query: 647 VSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
           V+L RPGPI  D +  Y  R++G+E+I  + P I  +L+ T GV I+QEQVMQ+A + +G
Sbjct: 611 VALVRPGPIQGDMVHPYLRRRHGRERIEPMRPEIAAVLERTCGVPIFQEQVMQLAVVAAG 670

Query: 705 YSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
           ++  EAD LRRAM   + K  +   +E+ I+G  + G  +  A  IF  +  F +YGF +
Sbjct: 671 FTPGEADQLRRAMAAWRRKGGLGPFEEKLITGMRQRGHDEAFAKRIFAQIQGFGEYGFPE 730

Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN- 822
           SHAA++A++ Y +AW+K H+P  FL A +  +      + +  QDAR+  +++ P +V+ 
Sbjct: 731 SHAASFALLVYVSAWLKRHHPAAFLCALLNSQPLGFYSLSQLVQDARRHGVEVRPATVSA 790

Query: 823 --------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                   +       G   +   LA+I G+   TA  ++EA    PF ++ +  +R 
Sbjct: 791 SGWKALLESAAPAIAAGGPAVRLGLASIVGLSQATAVRLLEARKQGPFANIAELAARA 848


>gi|254201717|ref|ZP_04908081.1| DNA polymerase III, alpha subunit [Burkholderia mallei FMH]
 gi|147747611|gb|EDK54687.1| DNA polymerase III, alpha subunit [Burkholderia mallei FMH]
          Length = 1066

 Score =  338 bits (866), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 271/911 (29%), Positives = 418/911 (45%), Gaps = 89/911 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 12  PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 71

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 72  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 126

Query: 129 VRICLSWLQEIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
            R+    L       L  L G      I    +   + V + +L  F  LFG+R  + L 
Sbjct: 127 YRLTPRMLAAP-PRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLV 185

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
           Q  R  D     QV        + +VA  +            D + A+     +++    
Sbjct: 186 QLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHA 245

Query: 247 RVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            + P  + +L+ R  +  +F    +AL  T  +   C F L               DD++
Sbjct: 246 -LAPNGEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DDLR 287

Query: 305 KEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            E  +E           L  +  AG   R   G           RQR++FEL +IA +K+
Sbjct: 288 YEYPHEIVPAGHTPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKY 341

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             YFL V D +++A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R 
Sbjct: 342 EPYFLTVYDIVKYARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERG 400

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
             PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+
Sbjct: 401 EPPDIDVDFEHQRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVE 460

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAS 526
           R+ K                D SR   AR A    DP V  +    EI+ +L    RH S
Sbjct: 461 RVAK-----------EHRWFDGSRDLLARFASVGLDPEVPLIRTWAEIAARLLNFPRHLS 509

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ 
Sbjct: 510 QHSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAF 569

Query: 587 DFL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
           D + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P  
Sbjct: 570 DMITAWRGPPLPDGRPFRLEHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRG 629

Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRK-----NGKEKIVSIHPLIDPMLKETQGVIIYQ 692
             D++  VS+ RPGPI    V  Y  R+         +I      ++ +L+ T G+ I+Q
Sbjct: 630 YYDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQ 689

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           EQVMQIA + +G++  EAD LRRAM   K K ++ K  ER ++G  + G S+  A  IFE
Sbjct: 690 EQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFE 749

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++
Sbjct: 750 QIKGFGEYGFPESHAASFAKLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKR 809

Query: 812 FNIQIMPPSVNT----------PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
             + ++P               P      G   +   L+ ++G+G   AR I  A A  P
Sbjct: 810 HGVTVLPIDATKSGWEASLEAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGP 869

Query: 862 FDSLEDFCSRV 872
           F S+++   R 
Sbjct: 870 FASVDELARRA 880


>gi|254181921|ref|ZP_04888518.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1655]
 gi|184212459|gb|EDU09502.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1655]
          Length = 1072

 Score =  337 bits (865), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 270/911 (29%), Positives = 418/911 (45%), Gaps = 89/911 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
            R+    L       L  L G      I    +   + V + +L  F  LFG+R  + L 
Sbjct: 124 YRLTPRMLAAP-PRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLV 182

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
           Q  R  D     QV        + +VA  +            D + A+     +++    
Sbjct: 183 QLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHA 242

Query: 247 RVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            + P  + +L+ R  +  +F    +AL  T  +   C F L               DD++
Sbjct: 243 -LAPNGEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DDLR 284

Query: 305 KEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            E  +E           L  +  AG   R   G           RQR++FEL +IA +K+
Sbjct: 285 YEYPHEIVPAGHTPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKY 338

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             YFL V D +++A+  +I +  GRGS A SV  Y + +T+++P + +LLFERFL+ +R 
Sbjct: 339 EPYFLTVYDIVKYARSKDI-LCQGRGSAANSVVCYCIGVTEVNPQQSTLLFERFLSRERG 397

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
             PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+
Sbjct: 398 EPPDIDVDFEHQRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVE 457

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAS 526
           R+ K                D SR   AR A    DP V  +    EI+ +L    RH S
Sbjct: 458 RVAK-----------EHRWFDGSRDLLARFASVGLDPEVPLIRTWAEIAARLLNFPRHLS 506

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ 
Sbjct: 507 QHSGGFVVSCGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAF 566

Query: 587 DFL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
           D + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P  
Sbjct: 567 DMITAWRGPPLPDGRPFRLEHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRG 626

Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRK-----NGKEKIVSIHPLIDPMLKETQGVIIYQ 692
             D++  VS+ RPGPI    V  Y  R+         +I      ++ +L+ T G+ I+Q
Sbjct: 627 YYDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQ 686

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           EQVMQIA + +G++  EAD LRRAM   K K ++ K  ER ++G  + G S+  A  IFE
Sbjct: 687 EQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFE 746

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++
Sbjct: 747 QIKGFGEYGFPESHAASFAKLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKR 806

Query: 812 FNIQIMPPSVNT----------PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
             + ++P               P      G   +   L+ ++G+G   AR I  A A  P
Sbjct: 807 HGVTVLPIDATKSGWEASLEAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGP 866

Query: 862 FDSLEDFCSRV 872
           F S+++   R 
Sbjct: 867 FASVDELARRA 877


>gi|226193729|ref|ZP_03789332.1| error-prone DNA polymerase [Burkholderia pseudomallei Pakistan 9]
 gi|225934307|gb|EEH30291.1| error-prone DNA polymerase [Burkholderia pseudomallei Pakistan 9]
          Length = 928

 Score =  337 bits (865), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 270/911 (29%), Positives = 418/911 (45%), Gaps = 89/911 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
            R+    L       L  L G      I    +   + V + +L  F  LFG+R  + L 
Sbjct: 124 YRLTPRMLAAP-PRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLV 182

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
           Q  R  D     QV        + +VA  +            D + A+     +++    
Sbjct: 183 QLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHA 242

Query: 247 RVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            + P  + +L+ R  +  +F    +AL  T  +   C F L               DD++
Sbjct: 243 -LAPNGEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DDLR 284

Query: 305 KEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            E  +E           L  +  AG   R   G           RQR++FEL +IA +K+
Sbjct: 285 YEYPHEIVPAGHTPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKY 338

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             YFL V D +++A+  +I +  GRGS A SV  Y + +T+++P + +LLFERFL+ +R 
Sbjct: 339 EPYFLTVYDIVKYARSKDI-LCQGRGSAANSVVCYCIGVTEVNPQQSTLLFERFLSRERG 397

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
             PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+
Sbjct: 398 EPPDIDVDFEHQRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVE 457

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAS 526
           R+ K                D SR   AR A    DP V  +    EI+ +L    RH S
Sbjct: 458 RVAK-----------EHRWFDGSRDLLARFASVGLDPEVPLIRTWAEIAARLLNFPRHLS 506

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ 
Sbjct: 507 QHSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAF 566

Query: 587 DFL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
           D + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P  
Sbjct: 567 DMITAWRGPPLPDGRPFRLEHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRG 626

Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRK-----NGKEKIVSIHPLIDPMLKETQGVIIYQ 692
             D++  VS+ RPGPI    V  Y  R+         +I      ++ +L+ T G+ I+Q
Sbjct: 627 YYDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQ 686

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           EQVMQIA + +G++  EAD LRRAM   K K ++ K  ER ++G  + G S+  A  IFE
Sbjct: 687 EQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFE 746

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++
Sbjct: 747 QIKGFGEYGFPESHAASFAKLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKR 806

Query: 812 FNIQIMPPSVNT----------PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
             + ++P               P      G   +   L+ ++G+G   AR I  A A  P
Sbjct: 807 HGVTVLPIDATKSGWEASLEAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGP 866

Query: 862 FDSLEDFCSRV 872
           F S+++   R 
Sbjct: 867 FASVDELARRA 877


>gi|167822588|ref|ZP_02454059.1| error-prone DNA polymerase [Burkholderia pseudomallei 9]
          Length = 882

 Score =  337 bits (865), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 270/911 (29%), Positives = 418/911 (45%), Gaps = 89/911 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
            R+    L       L  L G      I    +   + V + +L  F  LFG+R  + L 
Sbjct: 124 YRLTPRMLAAP-PRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLV 182

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
           Q  R  D     QV        + +VA  +            D + A+     +++    
Sbjct: 183 QLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHA 242

Query: 247 RVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            + P  + +L+ R  +  +F    +AL  T  +   C F L               DD++
Sbjct: 243 -LAPNGEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DDLR 284

Query: 305 KEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            E  +E           L  +  AG   R   G           RQR++FEL +IA +K+
Sbjct: 285 YEYPHEIVPAGHTPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKY 338

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             YFL V D +++A+  +I +  GRGS A SV  Y + +T+++P + +LLFERFL+ +R 
Sbjct: 339 EPYFLTVYDIVKYARSKDI-LCQGRGSAANSVVCYCIGVTEVNPQQSTLLFERFLSRERG 397

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
             PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+
Sbjct: 398 EPPDIDVDFEHQRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVE 457

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAS 526
           R+ K                D SR   AR A    DP V  +    EI+ +L    RH S
Sbjct: 458 RVAK-----------EHRWFDGSRDLLARFASVGLDPEVPLIRTWAEIAARLLNFPRHLS 506

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ 
Sbjct: 507 QHSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAF 566

Query: 587 DFL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
           D + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P  
Sbjct: 567 DMITAWRGPPLPDGRPFRLEHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRG 626

Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRK-----NGKEKIVSIHPLIDPMLKETQGVIIYQ 692
             D++  VS+ RPGPI    V  Y  R+         +I      ++ +L+ T G+ I+Q
Sbjct: 627 YYDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQ 686

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           EQVMQIA + +G++  EAD LRRAM   K K ++ K  ER ++G  + G S+  A  IFE
Sbjct: 687 EQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFE 746

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++
Sbjct: 747 QIKGFGEYGFPESHAASFAKLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKR 806

Query: 812 FNIQIMPPSVNT----------PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
             + ++P               P      G   +   L+ ++G+G   AR I  A A  P
Sbjct: 807 HGVTVLPIDATKSGWEASLEAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGP 866

Query: 862 FDSLEDFCSRV 872
           F S+++   R 
Sbjct: 867 FASVDELARRA 877


>gi|288919037|ref|ZP_06413378.1| DNA-directed DNA polymerase [Frankia sp. EUN1f]
 gi|288349577|gb|EFC83813.1| DNA-directed DNA polymerase [Frankia sp. EUN1f]
          Length = 771

 Score =  337 bits (864), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 217/617 (35%), Positives = 333/617 (53%), Gaps = 39/617 (6%)

Query: 325 QGAIAKGYHAQDYR-----QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
           QGA+ +   AQ  R      +L  EL VI ++ F GYFLIV D +++ ++++I +  GRG
Sbjct: 2   QGAVRRYGPAQAERVAGAYDQLVHELKVIEQLGFPGYFLIVHDIVEFCRRSDI-LCQGRG 60

Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
           S A S   YAL IT++D + F LLFERFL P+R   PD DID    RR+EVI+YV  +YG
Sbjct: 61  SAANSAVCYALGITNVDAVSFGLLFERFLAPERDGPPDIDIDIESGRREEVIQYVYGRYG 120

Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND---PAHPVSLQAIADDS 496
            +R AQ+    + + ++A+RDV RAL     Q D   + I      PAHP    A   D+
Sbjct: 121 RDRAAQVANVITYRPRSAVRDVARALGFSPGQQDAWSRQIDRGMPRPAHP----ADRPDT 176

Query: 497 RFREARLA-------------DPSVD---RLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
           R      A             D S      +L+++ +L G  RH   H+ G+VI DRP++
Sbjct: 177 RADADADADAGAGAGAGIEAPDTSAGIPAEVLDLAGQLLGFPRHLGIHSGGMVICDRPVA 236

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599
           ++VP+         V Q++      AGL+KFD LGL  L++L    D +    G ++DL 
Sbjct: 237 EVVPVEWARMPGRTVVQWDKDDCAAAGLVKFDLLGLGMLSMLHGVFDLIRTHHGRQLDLG 296

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP +D   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    
Sbjct: 297 SIPPEDPAVYDMLCAADSVGVFQVESRAQMSTLPRLRPRRFYDLVVEVALIRPGPIQGGS 356

Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           V  Y  R+NG E++V  HPL+   L++T GV ++QEQ+MQ+A  ++G++ +EAD LRRAM
Sbjct: 357 VHPYIRRRNGAEEVVYPHPLLRRSLEKTLGVPLFQEQLMQMAIDVAGFTPAEADQLRRAM 416

Query: 718 G-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
           G K+  E +D+ + RF +G + NGI+  +A +++  LA FAD+GF +SH+ ++A + Y +
Sbjct: 417 GAKRATERIDRLRTRFYAGMAVNGITGAVADDLYAKLAAFADFGFPESHSVSFAFLVYAS 476

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT--PCVDFKVGDNR 834
           +W+K +YP  F AA +  +       +    DAR+  + +  P +N     V        
Sbjct: 477 SWVKLYYPAAFCAALLNAQPMGFYSPQSLVADARRHGVVVHGPDLNASEAGVTLVGSPAA 536

Query: 835 IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
           +   LA I+ +G   A  I+ E  A  P+  + D   RV    L    +E+L  AGA  C
Sbjct: 537 LRLGLAGIRRLGDALAERIVAERRACGPYQDMSDLVRRV---GLRTEQIEALATAGAFGC 593

Query: 894 FGYSRMQLLQSLDNIQK 910
           FG +R + L +   + +
Sbjct: 594 FGLARREALWAAGAVAQ 610


>gi|329770059|ref|ZP_08261454.1| hypothetical protein HMPREF0433_01218 [Gemella sanguinis M325]
 gi|328837370|gb|EGF87000.1| hypothetical protein HMPREF0433_01218 [Gemella sanguinis M325]
          Length = 686

 Score =  337 bits (864), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 226/723 (31%), Positives = 380/723 (52%), Gaps = 66/723 (9%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           ++ +LQVHS+Y LL   +    +  K+  D Q ++ ITD   L+ A++  + A    +  
Sbjct: 2   TYYNLQVHSAYDLLNSTIKYTELFSKLKKDGQDSVVITDPT-LYGAIKAYKIAKKFDVNL 60

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           + G ++ +    +    N             +L    E + RL+E +S M + ++ + S+
Sbjct: 61  VHGLEIKLGYVISFLKFN-------------ILCKNTEMFYRLLE-ISTM-IENKVEWSI 105

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
              +  L++   + +I++       ++ ++  N           F + F   LY      
Sbjct: 106 EKLVEELKKSKEDFVIIVIDELRDSMEFSYL-NDVLKGFDFYFGFNEKFDASLY------ 158

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +Y E+            +V T  S +L+ + Y+   V  A+  +  ++  +    T
Sbjct: 159 ----QYYEN------------VVYTKPSFYLNNDQYQQVIVSRAIRDNAKLNITELTTTT 202

Query: 250 PDHYLKNRSEMVSIF--------SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              +++ + +  ++         S L +AL    E+  +C + L      LP++   + +
Sbjct: 203 GSKFVRTQEDFKNLLNVENPLLKSMLEKALVKQAEVIGKCRYNLGFKGYHLPKYKYGKDE 262

Query: 302 DIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
           D+ +     + LR     G + +L    + K      Y++R ++EL +I  M F+ YFLI
Sbjct: 263 DVFQNFSSRDYLRYLVQKGAKEKLFGKDLYK------YKKRYEYELKIIDEMGFNDYFLI 316

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V DF+++AK N I VG GRGS AGS+  Y L IT+ DPL ++LLFERFLN +R+SMPD D
Sbjct: 317 VYDFVKYAKSNGILVGAGRGSAAGSLVCYLLNITEADPLEYNLLFERFLNKERISMPDID 376

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           IDF   RRDEVI+YV+ KYG ++VAQIITF + Q+K+A R+  R LQ      D   K I
Sbjct: 377 IDFQDTRRDEVIKYVEEKYGEDKVAQIITFTTFQSKSAARESARILQFD----DNSLKFI 432

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVD-RLLEISQKLEGLYRHASTHAAGIVIGD-R 537
            ++ +   +L+   + S      + + +++ R   I+  LE L ++ S HAAG+VI D  
Sbjct: 433 SSNISSTRTLKECYESSEPLRNFVNESTINRRWFSIALSLESLPKNPSVHAAGVVISDNN 492

Query: 538 PLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
           PL +  P+     S++   +TQ+ M  +E  GL+K DFLG++ LT++   ++ + +   +
Sbjct: 493 PLMKYAPL---AESNMTKYLTQWTMDDVESVGLLKIDFLGIRYLTMVSSIVEQIKKENPE 549

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            D++ I + D + Y+L     T GIFQ ESSGM++ L  ++P    DI+A+ +LYRPGP+
Sbjct: 550 FDITKINYKDPKVYNLFAEGRTEGIFQFESSGMKEKLRLLKPTEFNDIVAMNALYRPGPM 609

Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             I  Y  RK+G+EK+   HP ++ +LK+T GVI+YQEQ+M IA   +  SL+EAD +RR
Sbjct: 610 AQIETYIRRKHGEEKVNYPHPNLEKILKDTYGVIVYQEQIMLIAVNFAHMSLNEADNMRR 669

Query: 716 AMG 718
           A+ 
Sbjct: 670 AVS 672


>gi|188584280|ref|YP_001927725.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001]
 gi|179347778|gb|ACB83190.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001]
          Length = 1070

 Score =  337 bits (864), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 299/1030 (29%), Positives = 467/1030 (45%), Gaps = 92/1030 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S   LQV + +S L GA S   +    +    PA+ ITD  +L   +   Q A   G++ 
Sbjct: 2    STPELQVTTHFSFLRGASSPEELFSAASLLGIPALGITDHGSLAGMVRAHQAAKVTGVRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+LD+D    L +       +PT             Y RL  L+S +     GK   
Sbjct: 62   VVGCRLDLDDFLPLLV-------YPT---------DRAAYGRLCRLLS-LGKARGGKGRC 104

Query: 130  RICLSWLQ-EIGTEGL--IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            R  L+W   E   EGL  ++L  G    +        S +A   L+  +K FG R    L
Sbjct: 105  R--LTWADLEAWQEGLFAVLLPEGREAAL-------PSDLASH-LVQLRKTFGVRASCAL 154

Query: 187  -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ--- 242
             +R R  D  R   +   A    +  VAT + L+         DV+  +     + +   
Sbjct: 155  TRRFRPDDADRLDALAAAARAARVATVATGDILYHVAGRRRLQDVVTCIRLGLTIDRAGF 214

Query: 243  -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             K+R     D +LK   E   +F+  PEAL    EIA  C+F L   A   P   E   D
Sbjct: 215  AKER---HADRFLKPPDETARLFARFPEALARAGEIAAACTFSLDDLAYTYP--TEARED 269

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             +  +E   L     AG E R   G        +   ++L  EL++I R+ ++ YFL V 
Sbjct: 270  GLSPQER--LEALTWAGAERRYPAGV------PEAVTRQLRHELDLIGRLAYAPYFLTVE 321

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
              + +A +  I +  GRGS A S   + L IT IDP+R +LLFERF++  R   PD D+D
Sbjct: 322  SIVAFADRKKI-LCQGRGSAANSAVCFCLRITSIDPIRQNLLFERFVSEARREPPDIDVD 380

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EVI+++   YG  R A        +++ ALR+VG+ + +P      L +L  +
Sbjct: 381  FEHERREEVIQWIFETYGRHRSALTAIVSRFRSRGALREVGKVMGLPEDVTGALNRLTWS 440

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRP 538
              +  V       +   RE  L +P   RL   LEI+++L G  RH S H  G V+    
Sbjct: 441  WSSEGVG------ERELRELNL-NPDDRRLRLTLEIARELIGTPRHLSQHPGGFVLTLDR 493

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L +LVP+     +   V +++   I+    +K D LGL  L  L+++ D LA+ +    D
Sbjct: 494  LDELVPVEPAAMAHRQVIEWDKDDIDALKFMKVDVLGLGMLGCLRRAFDLLAEVKNQPRD 553

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            L+ IP +D  TY ++    TLG+FQ+ES      L  M+P    D++  V++ RPGPI  
Sbjct: 554  LASIPQEDGATYAMIRRADTLGVFQIESRAQMAMLPRMKPRTFYDLVIEVAIVRPGPIQG 613

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D +  Y  R+  +E++    P +  +L++T GV ++QEQ MQ+A + +G+S  EAD LRR
Sbjct: 614  DMVHPYIRRREKREEVTYPTPELKAVLEKTLGVPLFQEQAMQVAMVGAGFSAMEADELRR 673

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +M   K    + + + R + G   NG ++  A   F+ L  F  YGF +SHAA++A+++Y
Sbjct: 674  SMATFKFTGGVHRFQTRLVEGMIANGYARDFAERTFKQLEGFGSYGFPESHAASFALLAY 733

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVDFKVG 831
             ++WMK H+P  F AA +  +        +  +DAR   + I P  VN     C    +G
Sbjct: 734  ASSWMKCHHPDVFCAALLNAQPMGFYAPAQIVRDARAHGVVIRPLDVNYSEWDCTLESLG 793

Query: 832  DNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            + R    +   L    G+     RH+ +    +PF SL +     D   L    L  LV 
Sbjct: 794  EGRELFAVRLGLRLASGLPERDGRHLAKMRGGRPFASLPEL---ADRAGLPATALTCLVR 850

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            A A    G +R           + A W  K        +FA    T S+     + +V  
Sbjct: 851  ADAFRSLGLNR-----------REAAWAAKALRPDPLPLFA----TLSEPAQAAEPAVSL 895

Query: 948  SSVRFENE----QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
             ++    E        G     HPL   +  L ++G +          G +I +A +V+ 
Sbjct: 896  PAMSAGGEVVADYCAKGLSLRAHPLAFLRGTLGRLGARPCAALDRVANGASIVVAGIVLM 955

Query: 1004 KQQKKTRKGS 1013
            +Q+  + KG+
Sbjct: 956  RQRPGSAKGT 965


>gi|325921687|ref|ZP_08183521.1| DNA polymerase III, alpha subunit [Xanthomonas gardneri ATCC 19865]
 gi|325547827|gb|EGD18847.1| DNA polymerase III, alpha subunit [Xanthomonas gardneri ATCC 19865]
          Length = 1083

 Score =  337 bits (863), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 276/1033 (26%), Positives = 472/1033 (45%), Gaps = 95/1033 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G++
Sbjct: 46   PAYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRATGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +    + D  +               VLLV  A GY +L  L++        +++
Sbjct: 106  LIVGSEFT--LVDGTR--------------FVLLVENAHGYPQLCALIT------TARRA 143

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                   L     E           P   A +   +Q   ++    +++FG+R ++ ++ 
Sbjct: 144  ASKGTYRLGRAEVEAQFR----DVAPGVFAVWMPGAQPQAEQGAWLQQVFGERAFLAVEL 199

Query: 189  HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D   R   +  LA    +  +A+ +       +    D L A+ HS  +++     
Sbjct: 200  HREQDDAVRLLALQLLAQQLGMTALASGDVHMAQRRERIVQDTLTAIRHSLPLAECGAHL 259

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  + +I+ D    L+ +V +A+RC+F +       P+ +  E       
Sbjct: 260  FRNGERHLRTRRALGNIYPD--ALLQASVGLAQRCTFDISKLEYTYPKELVPE----GHT 313

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     G+  R   G  AK       R  ++ EL +IA   +  +FL V D +++
Sbjct: 314  PASYLRLLTETGMRERWPNGTPAK------VRADIEKELALIAHKNYEAFFLTVQDVVRF 367

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF  +R
Sbjct: 368  ARDQHI-LCQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHER 426

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL--CKLIPNDPA 484
            R+EV++YV +KYG ER A   T    + K+A+RDV +A  +P  Q+  L  C    N   
Sbjct: 427  REEVLQYVYSKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGDT 486

Query: 485  HPVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
             P+       + R  EA   LA+P ++++L +++ L    RH S H  G VI D PLS L
Sbjct: 487  -PM-------EQRIEEAGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSML 538

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            VP+     ++  + Q++   +E   L+K D L L  LT ++K+L+ ++  RG    ++ +
Sbjct: 539  VPVENAAMANRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLELVSGHRGRDYTIATL 598

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D + 
Sbjct: 599  PGEDAPTYKMIQRADTVGVFQIESRAQMAMLPRLKPVVFYDLVIEVAIVRPGPIQGDMVH 658

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+ G+E++    P ++ +LK T GV ++QEQVM++    + Y+ SEAD LRR+M  
Sbjct: 659  PYLRRRQGREEVNYPSPEVEEILKPTLGVPLFQEQVMELLMHAAEYTESEADNLRRSMAA 718

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             +   +M++ + R        G + T    IFE +  F  YGF +SHAA++A + Y + W
Sbjct: 719  WRRGGDMEQHRTRVRERMQNRGYASTFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCW 778

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-----IQIMPPSV------NT---- 823
            +K H P  F    +  +        +  QDAR+ +     ++++P  V      NT    
Sbjct: 779  LKRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERARVEVLPVDVLHSVWNNTLVGG 838

Query: 824  -P-CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
             P C D   G+   I   +  + G+    A  I+ A A + F  + D C R     L+ +
Sbjct: 839  RPWCSDEDPGEQPAIRLGMRQVAGLSEGVATRIVAARAQRGFADIGDLCLRA---ALDEK 895

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
               +L  AGA           LQ +   +  A+W       +   +     G+  ++   
Sbjct: 896  ARLALAEAGA-----------LQGMVGNRNAARWAMAGVEARRPLL----PGSPEERPV- 939

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
             +F    +      + R +G     HP+ + +P +R+  I G  E      G+ + +A +
Sbjct: 940  -EFEAPRAGEDILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRSHGSGVHVAGL 998

Query: 1001 VVSKQQKKTRKGS 1013
            V  +Q+  T KG+
Sbjct: 999  VTQRQRPATAKGT 1011


>gi|71151845|sp|Q8PBL8|DNAE2_XANCP RecName: Full=Error-prone DNA polymerase
 gi|78099246|sp|Q4URY1|DNAE2_XANC8 RecName: Full=Error-prone DNA polymerase
          Length = 1082

 Score =  337 bits (863), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 274/1030 (26%), Positives = 470/1030 (45%), Gaps = 90/1030 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G+Q
Sbjct: 46   PAYAELHCLSDFSFLRGASSAEQLFARAHHCGYSALAITDECSLAGIVRGLEASRATGVQ 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +    + D  +               VLLV  A GY +L  +++       GK +
Sbjct: 106  LIVGSEFT--LVDGTR--------------FVLLVENAHGYPQLCSVITTGRRA-AGKGA 148

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + ++    + +         P   A +    Q   ++    +++F +R ++ ++ 
Sbjct: 149  YRLGRAEVEAHFRDVV---------PGVFALWLPGDQPQAEQGAWLQRVFAERAFLAVEL 199

Query: 189  HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D   R   +  LA    +  +A+ +       D    D L A+ H+  ++      
Sbjct: 200  HREQDDAARLQALQALAQQLGMSALASGDVQMAQRRDRIVQDTLTAIRHTLPLADCGAHL 259

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                + +L+ R  + +I+   P AL + +VE+A+RC+F L       PR +  +      
Sbjct: 260  FRNGERHLRPRRALGNIY---PHALLQASVELAQRCTFDLSKVQYTYPRELVPQ----GH 312

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR    AG+  R  +GA A+         ++D EL +IA   +  +FL V D ++
Sbjct: 313  TPASYLRQLTEAGMRERWPEGAPAQ------VVAQIDSELELIAYKGYEAFFLTVQDVVR 366

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   YAL IT ++P    LL  RFL+ +R   PD D+DF  +
Sbjct: 367  FARAQGI-LCQGRGSSANSAVCYALGITAVNPSETRLLMARFLSKERDEPPDIDVDFEHE 425

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L          
Sbjct: 426  RREEVLQYVYTKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGD 485

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                Q IA+        LA+P ++++L +++ L    RH S H  G VI D PLS LVP+
Sbjct: 486  TPMEQRIAEAG----FDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSMLVPV 541

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604
                 +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P +
Sbjct: 542  ENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYTIATLPGE 601

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y 
Sbjct: 602  DAATYKMIQRADTVGVFQIESRAQMAMLPRLKPREFYDLVIEVAIVRPGPIQGDMVHPYL 661

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+ G E +    P ++ +L  T G+ ++QEQVM++  + +GY+ SEAD LRR+M   + 
Sbjct: 662  RRRQGYEPVSFPSPGVEEILGRTLGIPLFQEQVMELV-IHAGYTDSEADQLRRSMAAWRR 720

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              +M+  + R     +  G +      IFE +  F  YGF +SHAA++A + Y + W+K 
Sbjct: 721  GGDMEPHRVRIRELMAGRGYAPEFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKR 780

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-----IQIMPPSVNTPCVDFKVGDNRIY 836
            H P  F    +  +        +  QDAR+ +     ++++P  V     D  +   R +
Sbjct: 781  HEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERQRVEVLPVDVLHSDWDNILVGGRPW 840

Query: 837  YS-------------LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            +S             L  + G+       I+ A A +PF  + D C R     L+ +   
Sbjct: 841  HSDADPGEQPAIRLGLRQVSGLSEKVVERIVAARAQRPFADIGDLCLRA---ALDEKARL 897

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            +L  AGA           LQS+   +  A+W       +   +     G+ +++    + 
Sbjct: 898  ALAEAGA-----------LQSMVGNRNAARWAMAGVEARRPLL----PGSPAERAV--EL 940

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                +      + R +G     HP+ + +P + +  I G  E  A   G+ + +A +V  
Sbjct: 941  PAPRAGEEILADYRAVGLSLRQHPMALLRPQMLQRRILGLRELQARRHGSGVHVAGLVTQ 1000

Query: 1004 KQQKKTRKGS 1013
            +Q+  T KG+
Sbjct: 1001 RQRPATAKGT 1010


>gi|21230559|ref|NP_636476.1| DNA polymerase III alpha chain [Xanthomonas campestris pv. campestris
            str. ATCC 33913]
 gi|66769450|ref|YP_244212.1| DNA polymerase III alpha chain [Xanthomonas campestris pv. campestris
            str. 8004]
 gi|21112134|gb|AAM40400.1| DNA polymerase III alpha chain [Xanthomonas campestris pv. campestris
            str. ATCC 33913]
 gi|66574782|gb|AAY50192.1| DNA polymerase III alpha chain [Xanthomonas campestris pv. campestris
            str. 8004]
          Length = 1064

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 274/1030 (26%), Positives = 470/1030 (45%), Gaps = 90/1030 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G+Q
Sbjct: 28   PAYAELHCLSDFSFLRGASSAEQLFARAHHCGYSALAITDECSLAGIVRGLEASRATGVQ 87

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +    + D  +               VLLV  A GY +L  +++       GK +
Sbjct: 88   LIVGSEFT--LVDGTR--------------FVLLVENAHGYPQLCSVIT-TGRRAAGKGA 130

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + ++    + +         P   A +    Q   ++    +++F +R ++ ++ 
Sbjct: 131  YRLGRAEVEAHFRDVV---------PGVFALWLPGDQPQAEQGAWLQRVFAERAFLAVEL 181

Query: 189  HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D   R   +  LA    +  +A+ +       D    D L A+ H+  ++      
Sbjct: 182  HREQDDAARLQALQALAQQLGMSALASGDVQMAQRRDRIVQDTLTAIRHTLPLADCGAHL 241

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                + +L+ R  + +I+   P AL + +VE+A+RC+F L       PR +  +      
Sbjct: 242  FRNGERHLRPRRALGNIY---PHALLQASVELAQRCTFDLSKVQYTYPRELVPQ----GH 294

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR    AG+  R  +GA A+         ++D EL +IA   +  +FL V D ++
Sbjct: 295  TPASYLRQLTEAGMRERWPEGAPAQ------VVAQIDSELELIAYKGYEAFFLTVQDVVR 348

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   YAL IT ++P    LL  RFL+ +R   PD D+DF  +
Sbjct: 349  FARAQGI-LCQGRGSSANSAVCYALGITAVNPSETRLLMARFLSKERDEPPDIDVDFEHE 407

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L          
Sbjct: 408  RREEVLQYVYTKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGD 467

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                Q IA+        LA+P ++++L +++ L    RH S H  G VI D PLS LVP+
Sbjct: 468  TPMEQRIAEAG----FDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSMLVPV 523

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604
                 +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P +
Sbjct: 524  ENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYTIATLPGE 583

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y 
Sbjct: 584  DAATYKMIQRADTVGVFQIESRAQMAMLPRLKPREFYDLVIEVAIVRPGPIQGDMVHPYL 643

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+ G E +    P ++ +L  T G+ ++QEQVM++  + +GY+ SEAD LRR+M   + 
Sbjct: 644  RRRQGYEPVSFPSPGVEEILGRTLGIPLFQEQVMELV-IHAGYTDSEADQLRRSMAAWRR 702

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              +M+  + R     +  G +      IFE +  F  YGF +SHAA++A + Y + W+K 
Sbjct: 703  GGDMEPHRVRIRELMAGRGYAPEFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKR 762

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-----IQIMPPSVNTPCVDFKVGDNRIY 836
            H P  F    +  +        +  QDAR+ +     ++++P  V     D  +   R +
Sbjct: 763  HEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERQRVEVLPVDVLHSDWDNILVGGRPW 822

Query: 837  YS-------------LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            +S             L  + G+       I+ A A +PF  + D C R     L+ +   
Sbjct: 823  HSDADPGEQPAIRLGLRQVSGLSEKVVERIVAARAQRPFADIGDLCLRA---ALDEKARL 879

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            +L  AGA           LQS+   +  A+W       +   +     G+ +++    + 
Sbjct: 880  ALAEAGA-----------LQSMVGNRNAARWAMAGVEARRPLL----PGSPAERAV--EL 922

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                +      + R +G     HP+ + +P + +  I G  E  A   G+ + +A +V  
Sbjct: 923  PAPRAGEEILADYRAVGLSLRQHPMALLRPQMLQRRILGLRELQARRHGSGVHVAGLVTQ 982

Query: 1004 KQQKKTRKGS 1013
            +Q+  T KG+
Sbjct: 983  RQRPATAKGT 992


>gi|16119907|ref|NP_396612.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58]
 gi|71151853|sp|Q8U642|DNE23_AGRT5 RecName: Full=Error-prone DNA polymerase 3
 gi|15163575|gb|AAK91053.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58]
          Length = 1087

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 285/1033 (27%), Positives = 472/1033 (45%), Gaps = 100/1033 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  LQV + +S L GA S   + +   A    A+ + D N+L   +   + + A G++ 
Sbjct: 2    SYAELQVTTHFSFLRGASSAQELFETAKALGIEALGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC+LD  + D +              S+++  +    Y RL  L++    L + +   
Sbjct: 62   VIGCRLD--LADGM--------------SVLVYPTDRAAYSRLTRLIT----LGKSRGGK 101

Query: 130  RICL-SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
              CL  W      + ++  T G  G +          +   +L    +LFGDR YV+L  
Sbjct: 102  NNCLLHW------DDVVAYTDGMIGILVPDL---PDDLCGIQLRKMAELFGDRAYVSLCL 152

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK--DR 245
            R R  D+ R  ++  LA   ++  V TN+ LF      +  D++  +   T + +   +R
Sbjct: 153  RRRQNDQLRLHEISNLATRFKVRTVVTNDVLFHEPGRRQLQDIVTCIRTRTTIDEVGFER 212

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R   D YLK   EM  +F    +AL  T+EI RRC+F L+      P    +E     K
Sbjct: 213  ER-HADRYLKPPEEMERLFPRYRQALARTMEIVRRCTFSLEELTYQYP----EEAIVPGK 267

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            + +  L +     +  R  +G         D  + +  EL++I  MK++ YFL V   ++
Sbjct: 268  DAQASLEHYVWQCVPDRYPEGL------PPDVLKVVRHELDLIRTMKYAPYFLTVFSIVR 321

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +
Sbjct: 322  YARSQGI-LCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHE 380

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+++   Y  E+ A   T    +A+ A+RDVG+AL +P   +  L   +      
Sbjct: 381  RREEVIQWIYRTYTREKAALCATVTRYRARGAIRDVGKALGLPEDVIKALSSGM------ 434

Query: 486  PVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              S      D   RE  L +P   RL   L+++Q+L G  RH   H  G V+    L  L
Sbjct: 435  -WSWSEEVCDRNVRELNL-NPDDRRLVLTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDL 492

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+      D  + +++   +E    +K D L L  LT + K+ D + + +   +DLS I
Sbjct: 493  VPIEPATMKDRQIIEWDKDDVEALKFMKVDILALGMLTCMAKAFDLIREHKDRDLDLSKI 552

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
              +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D + 
Sbjct: 553  EQEDSVTYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVH 612

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+ GKE +    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M  
Sbjct: 613  PYLRRREGKEAVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMAT 672

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    + + K++ +SG  +NG +   A   F  L  F  YGF +SHAA++A+I+Y +++
Sbjct: 673  FKFTGGVSQFKDKLVSGMVRNGYAPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASSY 732

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVDFKVGD--- 832
            +K HYP  F AA +  +        +   DAR   +++ P  +N     C   ++G+   
Sbjct: 733  IKCHYPEAFCAALINSQPMGFYAPAQIVGDARAHGVEVRPVCINRSRWDCTLERIGNSDR 792

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            + +      +KG+    A  ++ A  +  F S++D   R           E+LV     D
Sbjct: 793  HAVRLGFRQVKGLAVADAARVVAARMNNAFVSVDDMWRRSGVPS------EALVQLAKAD 846

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-------------HEKGTFSDKIT 939
             F       L SL   ++ A W  K   ++   +FA              E G    ++T
Sbjct: 847  AF-------LPSLKLERRDALWAIKALRDEPLPLFAAAAEREMAAIAEQQEPGVALRQMT 899

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
                 +E+ S          G     HP+   +  L    I    E++ +  G  +  A 
Sbjct: 900  DGHNVIEDYS--------HTGLTLRQHPIAFLRKDLSVRNIITCAEAMNSRDGRWVYTAG 951

Query: 1000 MVVSKQQKKTRKG 1012
            +V+ +Q+  + KG
Sbjct: 952  LVLVRQKPGSAKG 964


>gi|29833097|ref|NP_827731.1| DNA polymerase III alpha subunit [Streptomyces avermitilis MA-4680]
 gi|29610219|dbj|BAC74266.1| putative DNA polymerase III alpha subunit [Streptomyces avermitilis
            MA-4680]
          Length = 1161

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 286/1078 (26%), Positives = 477/1078 (44%), Gaps = 89/1078 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL   S +S   GA     + ++ +     A+A+TD + L   + F++   AAG++
Sbjct: 2    PGFTHLHTVSGFSPRYGASHPERLAERASERGMDALALTDRDTLAGTVRFAKACAAAGVR 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPF-------PTVPSIVLLV-STAEGYQRLIELVSRMY 120
            P+ G +L +      +   + + P         + P +  L    A G+  L  +V+  +
Sbjct: 62   PLFGAELMVASAGEREHGGKRRAPVRGGAFIDESTPRVTFLAREGAAGWADLCRIVTASH 121

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
               +G+      L W  +   EGL +L G +S  + RA        A + L  +++++GD
Sbjct: 122  T-GEGQP----LLPW-PDNHAEGLTVLLGPASD-VGRALAAGRPDRAARLLAPWREVYGD 174

Query: 181  RLYVNLQRH----RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             L +    H     G    R  ++ V  A    +  V +N   +         DVL A A
Sbjct: 175  ALRLEAVWHGRKGTGPGSLRLAARTVGFAAEQRVRPVLSNAVRYADPGMGPVADVLDA-A 233

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
               V     +   + + +LK+   M+     + EA     + A R   + Q  A      
Sbjct: 234  RRLVPVDPTKELDSGEAWLKDADAMLGAAERIVEAAGYRRDTAYR--LLEQTQATAAECL 291

Query: 296  IEKECD----DIQKEEENEL---RNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNV 347
            ++ E D     +   E + +   R  A   L  R A G +  GY   +DY +R+  EL++
Sbjct: 292  VDPEDDLGIGTVHFPEPHLVGAGRRTAQRVLTSRAAAGMVRHGYADRRDYWERMHRELDI 351

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            IA   F+ YFL VA  +   +   I V   RGSGAGS+  + L I   DP+   LL ERF
Sbjct: 352  IAHHGFASYFLTVAQVVDDVRDMGIRVA-ARGSGAGSLVNHLLGIAHADPVEHGLLMERF 410

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            L+  R  +PD DID    RR EV R +  ++G ERVA +    + + + A+RDVG AL M
Sbjct: 411  LSKRRAVLPDIDIDVESARRIEVYRAIIGRFGTERVATVAMPETYRVRHAIRDVGAALSM 470

Query: 468  PYSQVDRLCKLIPN--------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
              + +DR+ K  P+          A    L+ +A + R    R       +L E+ + L+
Sbjct: 471  DPADIDRIAKSFPHIRARDARAALAELPELRELAGEFRREGGRYG-----KLWELVEALD 525

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
             L R  + H  G+++ D  L    P+       LP++QF+ + +E  GL+K D LG++  
Sbjct: 526  ALPRGVAMHPCGVLLSDASLLARTPVVPTSGEGLPMSQFDKEDVEDLGLLKLDVLGVRMQ 585

Query: 580  TLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            + +  ++  + +  G  VDL  +P  D  TY L+ +  TLG FQ+ES G R  +  +QP 
Sbjct: 586  SAMAHAVAEVERATGTSVDLDAVPPGDPATYRLIRSAETLGCFQIESPGQRDLVGRLQPA 645

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
               D++  +SL+RPGP+  D +  +   ++G+  +   HP ++  LKET GV+++ EQ++
Sbjct: 646  TFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRCPHPDLEGPLKETYGVVVFHEQII 705

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
             I  +++G   +EAD +RR +     E   + +  F   A+  G         +E++  F
Sbjct: 706  DIVDIMTGCGRAEADRVRRGLSD--PESQGRIRFWFAQHAAVRGYDAETIQRTWEIVEAF 763

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
              YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+  + +
Sbjct: 764  GSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRGVPV 822

Query: 817  MPPSVNTPCVDFKV----------------------GDNRIYYSLAAIKGVGTTTARHIM 854
            +P  VN   V  ++                      G   +  +L+ + G+    A  I 
Sbjct: 823  LPLDVNRSAVAHRIELVSESGDPSGGSSGGPSGGSPGRWGVRLALSDVHGISEAEAARIA 882

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
            +    +P+ SL DF  R    + +R + + L   GALD FG +R  L   L  + +    
Sbjct: 883  DG---QPYASLLDFWERA---RPSRPLAQRLAQVGALDAFGANRRDLQLHLTELHRG--- 933

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
                     +      +GT S    L   S   S+ R   E  VL    S H +D ++  
Sbjct: 934  --ARGGGGGQLPLTGGRGTAS--AGLPDLS---SAERLSAELGVLSMDASRHLMDDHREF 986

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            L ++ +           G  + +A    + Q    R G R+ + T  +     +  FF
Sbjct: 987  LDELRVVSARRLREARHGETVLVAGAKAATQTPPVRSGKRVIFTTLDDGTGLVDLAFF 1044


>gi|312115146|ref|YP_004012742.1| DNA polymerase III subunit alpha [Rhodomicrobium vannielii ATCC
            17100]
 gi|311220275|gb|ADP71643.1| DNA polymerase III, alpha subunit [Rhodomicrobium vannielii ATCC
            17100]
          Length = 1180

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 255/876 (29%), Positives = 410/876 (46%), Gaps = 56/876 (6%)

Query: 159  FFFNSSQVAEKR--LLTFKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATN 215
             F N  ++A+ R  L T      DR+Y+    R RG D  R +++   A    +PLVAT 
Sbjct: 232  IFRNPRRMADFRRHLKTLAARLPDRVYLAASHRFRGDDGQRIARLAAFADDLRVPLVATG 291

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
            + L+         DVL  + H+  + +   R     + +LK  +EM  +F+  PEA+ NT
Sbjct: 292  DVLYHIPARRRLQDVLTCIRHTCTIDEAGFRLVANAERHLKAPAEMARLFARYPEAVANT 351

Query: 275  VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
            V++A RC+F L       P  I    +  Q      L      GL  R + G        
Sbjct: 352  VKLAARCTFSLAELTYEYPEEIAPNGEAPQAR----LERLTWEGLAWRYSDGV------P 401

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
                Q++  E  +IAR  ++ +FL V D +++A+K NI +  GRGS A S   YAL IT 
Sbjct: 402  DTVAQQVRHEFELIARFDYAPFFLTVEDIVRFARKKNI-LHQGRGSAANSAVCYALGITG 460

Query: 395  IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
            +DP R +LLFERF++  R   PD D+DF  +RR+EVI+Y+ +++G  R     T    + 
Sbjct: 461  VDPARSNLLFERFISDARHEPPDIDVDFEHERREEVIQYIYSRFGRHRAGLCATVICYRT 520

Query: 455  KAALRDVGRALQMPYSQVDRLCKLI---PNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            + A+R+VG+AL +       L   +    +    P  L ++  D+       +DP +   
Sbjct: 521  RGAVREVGKALGLSPDVTAALSGSVWGWSDGGVDPGDLASLGLDA-------SDPRLILC 573

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            LE++++L G  RH S H  G +I    L +LVP+      D  +  ++   IE  G++K 
Sbjct: 574  LELTRELIGFPRHLSQHPGGFLIARGRLDELVPIENAAMKDRTIVSWDKDDIEALGMLKV 633

Query: 572  DFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            D L L  LT L K  D + A  G  +  + +P +D   Y +L+   ++G+FQ+ES   + 
Sbjct: 634  DVLALGMLTCLAKGFDLIRAHYGRDLTPATVPSEDPAVYAMLSRADSIGVFQVESRAQQT 693

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
             L  ++P    D++  V++ RPGPI  D +  Y  R+ G E+     P +  +L++T GV
Sbjct: 694  MLPRLKPQNFYDLVIEVAIVRPGPIQGDMVHPYLRRRQGLEEARFPSPELKGILEKTLGV 753

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMG--KKIKEEMDKQKERFISGASKNGISKTIA 746
             ++QEQ M+IA + +G+S   AD LRRAM   KK+   +   K+ FI G       +  A
Sbjct: 754  PLFQEQCMRIAIVAAGFSAGRADELRRAMATFKKVG-TIGTFKDEFIGGMLARNYPRDFA 812

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
               F  +  F  YGF +SHAA++A++ Y +AWMK HYP  F AA +  +        +  
Sbjct: 813  ERCFSQIQGFGTYGFPESHAASFALLVYCSAWMKCHYPDVFAAAILNSQPMGFYAPAQLV 872

Query: 807  QDARQFNIQIMPPSVNTPCVDFKV----GDN---RIYYSLAAIKGVGTTTARHIMEA-SA 858
            +DAR+  +++    VN    D  +    G+    R+ + L A  G+    AR+I+EA +A
Sbjct: 873  RDAREHGVEVRAADVNASEWDHTLEATDGERHALRLGFRLVA--GMRVEDARNIVEARAA 930

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
               F S ED   R    KL    + +L  A A       R + L  +  ++         
Sbjct: 931  AGAFRSTEDVMRRA---KLGTAAMLTLARADAFGSVARGRRETLWDVAGLEA-------- 979

Query: 919  RTNKHENIFAHEKG-TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                   +FAHE   +    +         +      +  V G     HP+   +  L+ 
Sbjct: 980  ---DKLPLFAHETAPSVPPGVPAVALPPLGAGEAVAEDYSVFGLSLRNHPMAFMRAELQA 1036

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
              +    +      G  + +A +V+ +Q+  T KG+
Sbjct: 1037 QRMVRAVDLKTLPNGRFVTIAGLVLFRQRPGTAKGT 1072



 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 37/67 (55%)

Query: 9  PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          P +  LQ  +++S LEGA   + ++ + A     AIAITD N+L   +     A   G++
Sbjct: 8  PRYAELQAATNFSFLEGASHPHELVARAAELGLSAIAITDRNSLAGVVRAHLAAREHGVK 67

Query: 69 PIIGCQL 75
           +IGC+L
Sbjct: 68 LVIGCRL 74


>gi|329909587|ref|ZP_08275095.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
            IMCC9480]
 gi|327546430|gb|EGF31433.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
            IMCC9480]
          Length = 1039

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 277/1029 (26%), Positives = 485/1029 (47%), Gaps = 85/1029 (8%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            ++ P +  L   S+Y+ L GA     ++++ A     A+AITD  +L   +    +A   
Sbjct: 3    QQLPPYAELHCLSNYTFLRGASHPEELIERAAGLGYTALAITDECSLAGVVRAHIEAKKH 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+  +IG   ++ ++  +K+              +LL +   GY  L +L++     +  
Sbjct: 63   GLALLIGT--EVTLRCGMKL--------------LLLATNRNGYGNLSQLIT-----NGR 101

Query: 126  KQSVRICLSW-LQEIGTEGLIMLTGGSSGPI-DRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +++ + C    +++  T  L  L G  +  + +RA   +  Q   + L     +F  R +
Sbjct: 102  RRADKGCYQLSIEDFVTPELAGLAGCLAILLPERAHGGDQRQQQAQWL---AHVFEARAW 158

Query: 184  VNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + ++  HR  D     ++  L+    LPLVA  +            D + A+     +++
Sbjct: 159  IAVELLHRLDDDAWLQRLSALSQQTGLPLVAGGDVHMHLRSRKPLQDTVTAIRLGKPIAE 218

Query: 243  KDRP-RVTPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKEC 300
                     + +L++R  +  ++   P AL E T+ +A+RC+F L       P  I    
Sbjct: 219  CGLALHPNAEQHLRSRLRLAQLY---PRALLEQTLVVAQRCTFSLDELRYEYPLEIVPAG 275

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              +    +  LR+    G   R A G  AK       +++++ EL +I  + +  YFL V
Sbjct: 276  ATL----DGHLRSLTYEGAARRFATGIPAK------VQEQIEHELALIHDLAYEPYFLTV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +++A+  +I +  GRGS A SV  Y L IT++DP R S+LFERF++ +R   PD D+
Sbjct: 326  HDIVRFARSRDI-LCQGRGSAANSVVCYCLGITEVDPERMSMLFERFISKERNEPPDIDV 384

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR+EVI+Y+  KYG  R A      + + ++AL+DVG+AL + + Q++RL     
Sbjct: 385  DFEHQRREEVIQYIYRKYGRHRAALTGVHITYRPRSALKDVGKALGIDFDQINRLSH--- 441

Query: 481  NDPAHPVSLQAIADDSRFREARLADPS---VDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
               +H         D R RE+   DP    V +LLE+++ L G  RH S H  G VI   
Sbjct: 442  ---SHQWWEDGQVSDERLRESGF-DPDASLVQKLLELTRTLVGFPRHLSQHPGGFVIARD 497

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKV 596
             L++LVP+      +  + +++   ++  G++K D L L  L+ ++++LD +  +RG   
Sbjct: 498  NLARLVPIENAAMPERSMIEWDKNDLDALGILKIDVLALGMLSAIRRALDLIGLRRGDIF 557

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  +P +D  TY ++    T+G+FQ+ES      L  ++P+    ++  V++ RPGPI 
Sbjct: 558  TMQDVPAEDPATYAMICAADTVGVFQIESRAQMSMLPRLRPEKFYHLVIEVAIVRPGPIQ 617

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
              +V  Y  R+ G E+    +  +   L+ T GV I+QEQVMQ+  L +G++  +AD LR
Sbjct: 618  GGMVHPYLRRRQGLEQATYANADMKLALERTLGVPIFQEQVMQVVMLAAGFTPGQADDLR 677

Query: 715  RAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+M   K K  + K +E  I G    G +   A  +F  +  F +YGF +SHAA++A++ 
Sbjct: 678  RSMAAWKRKGGLQKFREPVIEGMLARGYNLEFAEGLFSQIEGFGEYGFPESHAASFALLV 737

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV---NTPCV---- 826
            Y +AW+K H P  FLAA +  +        +  QDAR+  ++++P  V      C     
Sbjct: 738  YVSAWIKRHEPAAFLAALLNSQPMGFYGPSQLVQDARRHGVRVLPVDVMISEVECTLEEH 797

Query: 827  --DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              +       +   L  ++G+    A+ ++E  A +PFDS++D   R +  +        
Sbjct: 798  AAELNAAQPDVRLGLCLVRGLSGQAAQRVIEVRAMRPFDSVDDMARRAELDQ-------- 849

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
                   D    +    L +L   ++ A W E         +  H   T +  +TL   S
Sbjct: 850  ------HDLKALAAANALFALAGHRRQANW-EVAALLPVTPLLRHAPITEA-ALTLPAAS 901

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +  V    + R  G   + HPL + +P LR+M +    E      G  +R + +V  +
Sbjct: 902  EGHDIV---ADYRSTGLTLNRHPLALLRPRLRQMKLSTALELKGFGNGKLVRTSGLVTMR 958

Query: 1005 QQKKTRKGS 1013
            Q+  T KG+
Sbjct: 959  QRPGTAKGT 967


>gi|167844169|ref|ZP_02469677.1| error-prone DNA polymerase [Burkholderia pseudomallei B7210]
          Length = 852

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 257/847 (30%), Positives = 396/847 (46%), Gaps = 79/847 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
            R+    L       L  L G      I    +   + V + +L  F  LFG+R  + L 
Sbjct: 124 YRLTPRMLAAP-PRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLV 182

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
           Q  R  D     QV        + +VA  +            D + A+     +++    
Sbjct: 183 QLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHA 242

Query: 247 RVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            + P  + +L+ R  +  +F    +AL  T  +   C F L               DD++
Sbjct: 243 -LAPNGEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DDLR 284

Query: 305 KEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            E  +E           L  +  AG   R   G           RQR++FEL +IA +K+
Sbjct: 285 YEYPHEIVPAGHTSTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKY 338

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             YFL V D +++A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R 
Sbjct: 339 EPYFLTVYDIVKYARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERG 397

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
             PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+
Sbjct: 398 EPPDIDVDFEHQRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVE 457

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAS 526
           R+ K                D SR   AR A    DP V  +    EI+ +L    RH S
Sbjct: 458 RVAK-----------EHRWFDGSRDLLARFASVGLDPEVPLIRTWAEIAARLLNFPRHLS 506

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ 
Sbjct: 507 QHSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAF 566

Query: 587 DFL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
           D + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P  
Sbjct: 567 DMITAWRGPPLPDGRPFRLERIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRG 626

Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRK-----NGKEKIVSIHPLIDPMLKETQGVIIYQ 692
             D++  VS+ RPGPI    V  Y  R+         +I      ++ +L+ T G+ I+Q
Sbjct: 627 YYDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQ 686

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           EQVMQIA + +G++  EAD LRRAM   K K ++ K  ER ++G  + G S+  A  IFE
Sbjct: 687 EQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFE 746

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++
Sbjct: 747 QIKGFGEYGFPESHAASFAKLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKR 806

Query: 812 FNIQIMP 818
             + ++P
Sbjct: 807 HGVTVLP 813


>gi|254482564|ref|ZP_05095803.1| DNA polymerase III, alpha subunit subfamily, putative [marine gamma
           proteobacterium HTCC2148]
 gi|214037255|gb|EEB77923.1| DNA polymerase III, alpha subunit subfamily, putative [marine gamma
           proteobacterium HTCC2148]
          Length = 1031

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 280/982 (28%), Positives = 459/982 (46%), Gaps = 85/982 (8%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           ++  L   S YS L  A   + ++++ A     A+AITD  +L   ++    A  AG++ 
Sbjct: 3   NYSELHCLSCYSFLRSASHPHELVERAAQLGYGALAITDECSLAGVVKAHVAAKEAGLKL 62

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIG +  ++    L      +  +  +     L+S A   +R  +   R  L D      
Sbjct: 63  IIGSEFKLEEGIRLVALAPSRAAYSELSG---LISMAR--RRSPKGEYRANLRDVIFHLK 117

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           R  L WL     +             D+A+     Q+A        +L  +R+++ +   
Sbjct: 118 RCLLIWLPRDNDDH------------DKAY---GQQLA--------RLCKNRIWLGVSHL 154

Query: 190 RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            G D  R       LA    +PLVA  +           HDV  A+ ++T V+Q  R R+
Sbjct: 155 LGNDEARHFENTSALATALNIPLVACGDVRMHLASRKPLHDVFTALHYNTSVAQLGRRRL 214

Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +L++   +  ++   PE +  T  I  RC+F L       P    +E        
Sbjct: 215 GNSQQHLRSLERIHQLYP--PELILETERIVSRCNFSLDELRYEYP----EEVVPQGHSA 268

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + LR     G + R   G        +  +QR+D EL +I  + +  YFL V D + +A
Sbjct: 269 NSYLRQLVDEGSKRRWPTGT------PEPVQQRIDRELELIDELNYEYYFLTVYDIVDFA 322

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           +  +I +  GRGS A SV  Y L IT++ P + SLLFERF++ +R   PD D+DF  +RR
Sbjct: 323 RSRDI-LCQGRGSAANSVVCYCLGITEVSPEQISLLFERFISKERDEPPDIDVDFEHERR 381

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           +EVI+Y+  KY   R A   T  + ++++A+RDVG+AL +    VD L K +        
Sbjct: 382 EEVIQYIYRKYSRRRAALAATLITYRSRSAVRDVGKALGLDPVFVDDLAKSL-------A 434

Query: 488 SLQAIADDS-RFREARLADPS--VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                AD S RF E  +A  S   D    + Q++ G  RH S H  G VI   P+S LVP
Sbjct: 435 WWDRTADLSKRFEEQGVAGHSQQADLFYNLVQQILGFPRHLSQHVGGFVITRSPISTLVP 494

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPF 603
           +     ++  V Q++ + IE  GL+K D L L  L+ ++KSL  + +    +  +S IP 
Sbjct: 495 VENASMAERTVIQWDKEDIESLGLLKVDILALGMLSAIRKSLQMVHRYNPAIATVSDIPK 554

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
           +D  TY +L    T G+FQ+ES      L  ++P+C  D++  +++ RPGPI  D +  Y
Sbjct: 555 EDAATYQMLQQADTTGVFQIESRAQMSMLPRLKPECFYDLVIQIAIVRPGPIQGDMVHPY 614

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK G E I      I  +L+ T GV I+QEQV+++A + +G+S  EAD LRRA+    
Sbjct: 615 LRRKQGLEVITYPSEEIKGVLERTLGVPIFQEQVIRLAMVAAGFSGGEADQLRRAIANWG 674

Query: 722 K-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
           +  ++   +++   G  + G  +  A  +F+ +  FA YGF +SH+A++A+++Y ++W+K
Sbjct: 675 RNSKLLGFEQKLTQGMIERGYDEDFARRLFDQIKGFAGYGFPESHSASFALLAYISSWLK 734

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNR- 834
            H+P  F A  +  +        +  QDAR+  +  +P  VN    D ++     G N+ 
Sbjct: 735 RHHPAAFFAGLLNSQPMGFYSASQLLQDARRHGVVALPIDVNQSDWDHQLLDQHRGTNKP 794

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
           +   L  +KG+    A+ ++E     PF  + D   R    +L++R +E+L  A AL   
Sbjct: 795 VRLGLRLVKGLSRGGAQRVVEGRQQSPFRQISDLRRRA---QLDKRDMEALADADALVSL 851

Query: 895 GYSRMQLLQSLDNIQKYAQW----VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
              R Q           +QW    +E+ R    +  F +    F+DK+ L   +V    +
Sbjct: 852 SGHRHQ-----------SQWQIMALEEARPLLQDEQFQNAH-YFNDKVQLPAPAVAEEVL 899

Query: 951 RFENEQRVLGFYFSGHPLDVYK 972
              ++ R  G     HPL + +
Sbjct: 900 ---SDYRATGLTLRAHPLSLLR 918


>gi|295676323|ref|YP_003604847.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1002]
 gi|295436166|gb|ADG15336.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1002]
          Length = 1049

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 256/902 (28%), Positives = 429/902 (47%), Gaps = 80/902 (8%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  L   S+++ L GA     +  + A     A+AITD  +L   +     A  A + 
Sbjct: 9   PAYAELFCFSNFTFLRGASHAEELAQRAAQLGYSALAITDECSLAGVVRAHVAAKEAKLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I+G           ++ N   +P      ++LL     GY  L EL++ +  +   K  
Sbjct: 69  FIVG--------SYFRLVNADGSP---AFGLILLARNRNGYGNLSELIT-LARMRAPKGE 116

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            R+    L     E   +L       I    F  S    + ++    + F  R +V L  
Sbjct: 117 YRLTPQDLSRPEKEYRHLLGMPDCLAILVPDFPASEDALDAQVEWLDETFTGRAWVGLVL 176

Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H R  D      V  +A + ++P+VA    +          D + A+     V +     
Sbjct: 177 HQRAMDDMHRGAVEFVAKSRDVPVVALGEVVMHVRSRKPLQDTMTAIRVGKPVHECGYDL 236

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L++R  + +++ +  +AL  TV+I  RC+F L               D+++ E
Sbjct: 237 APNAEQHLRSRLRLANLYPE--DALAATVDIMSRCTFSL---------------DELRYE 279

Query: 307 EENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
             +EL           R +   G + R   G     +H Q   Q+++ EL +IA +++  
Sbjct: 280 YPDELVPAGHTPASYLRQETYIGAQRRFPAGI---PHHVQ---QQIEHELELIADLQYEP 333

Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
           YFL V D +++A+  +I +  GRGS A S   Y L +T++DP R ++LFERF++ +R   
Sbjct: 334 YFLTVYDIVRFARSQHI-LCQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEP 392

Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
           PD D+DF   RR+EVI+Y+  KYG +R A      + + + ALR+ G+AL +    VD +
Sbjct: 393 PDIDVDFEHQRREEVIQYIYRKYGRDRAAIAAAVSTYRPRGALRETGKALGVDPQIVDAV 452

Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLAD-------PSVDRLLEISQKLEGLYRHASTH 528
            K      +H        D SR   AR A+       P +    +++ +L    RH S H
Sbjct: 453 AK------SH-----HWFDTSRDLLARFAESGLDPDKPLIQAWAKLASQLLNFPRHLSQH 501

Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
           + G VI    L++LVP+     +D  V +++   +E  GL+K D L L  L+ ++++LD 
Sbjct: 502 SGGFVISRGKLTRLVPVENAAMADRSVIEWDKDDLESLGLLKVDVLALGMLSAIRRTLDL 561

Query: 589 LA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
           ++ QRG + ++  IP +D  TY +++   T+G+FQ+ES      L  M+P    D++  V
Sbjct: 562 VSEQRGERFEMQDIPSEDPATYAMISAADTVGVFQIESRAQMSMLPRMRPRTFYDLVIEV 621

Query: 648 SLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
           ++ RPGPI    V  Y  R+ G E +      +   L  T GV I+QEQVMQ+A L +G+
Sbjct: 622 AIVRPGPIQGGAVHPYLQRRQGFEPVTYPSDALKTALGRTLGVPIFQEQVMQVAILAAGF 681

Query: 706 SLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
           +  EAD LRRAM   K K  ++K  +R + G  + G  +  A  IFE +  F +YGF +S
Sbjct: 682 TAGEADQLRRAMAAWKRKGGLEKYYDRIVLGMQERGYDQAFAEAIFEQIKGFGEYGFPES 741

Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT- 823
           HAA++A++ Y ++W+K H P  FLAA +  +        +  QDA++  + ++P  V   
Sbjct: 742 HAASFALLVYASSWLKCHEPEAFLAAMLNSQPMGFYSPSQLVQDAQRHGVTVLPVDVTVS 801

Query: 824 ---PCVDFKVGDNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                ++ + G  R  +   L+ ++G+    A  I  A A +PF S+ D   R    +L+
Sbjct: 802 GWNSSLEPRAGAMRPAVRLGLSLLRGMKDGAAERIENARAVRPFASVNDLARRA---QLD 858

Query: 879 RR 880
           R+
Sbjct: 859 RK 860


>gi|167814068|ref|ZP_02445748.1| error-prone DNA polymerase [Burkholderia pseudomallei 91]
          Length = 848

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 257/847 (30%), Positives = 396/847 (46%), Gaps = 79/847 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
            R+    L       L  L G      I    +   + V + +L  F  LFG+R  + L 
Sbjct: 124 YRLTPRMLAAP-PRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLV 182

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
           Q  R  D     QV        + +VA  +            D + A+     +++    
Sbjct: 183 QLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGH- 241

Query: 247 RVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            + P  + +L+ R  +  +F    +AL  T  +   C F L               DD++
Sbjct: 242 ALAPNGEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DDLR 284

Query: 305 KEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            E  +E           L  +  AG   R   G           RQR++FEL +IA +K+
Sbjct: 285 YEYPHEIVPAGHTPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKY 338

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             YFL V D +++A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R 
Sbjct: 339 EPYFLTVYDIVKYARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERG 397

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
             PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+
Sbjct: 398 EPPDIDVDFEHQRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVE 457

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAS 526
           R+ K                D SR   AR A    DP V  +    EI+ +L    RH S
Sbjct: 458 RVAK-----------EHRWFDGSRDLLARFASVGLDPEVPLIRTWAEIAARLLNFPRHLS 506

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ 
Sbjct: 507 QHSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAF 566

Query: 587 DFL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
           D + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P  
Sbjct: 567 DMITAWRGPPLPDGRPFRLEHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRG 626

Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRK-----NGKEKIVSIHPLIDPMLKETQGVIIYQ 692
             D++  VS+ RPGPI    V  Y  R+         +I      ++ +L+ T G+ I+Q
Sbjct: 627 YYDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQ 686

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           EQVMQIA + +G++  EAD LRRAM   K K ++ K  ER ++G  + G S+  A  IFE
Sbjct: 687 EQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFE 746

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++
Sbjct: 747 QIKGFGEYGFPESHAASFAKLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKR 806

Query: 812 FNIQIMP 818
             + ++P
Sbjct: 807 HGVTVLP 813


>gi|167901170|ref|ZP_02488375.1| error-prone DNA polymerase [Burkholderia pseudomallei NCTC 13177]
          Length = 843

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 257/847 (30%), Positives = 396/847 (46%), Gaps = 79/847 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
            R+    L       L  L G      I    +   + V + +L  F  LFG+R  + L 
Sbjct: 124 YRLTPRMLAAP-PRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLV 182

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
           Q  R  D     QV        + +VA  +            D + A+     +++    
Sbjct: 183 QLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGH- 241

Query: 247 RVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            + P  + +L+ R  +  +F    +AL  T  +   C F L               DD++
Sbjct: 242 ALAPNGEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DDLR 284

Query: 305 KEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            E  +E           L  +  AG   R   G           RQR++FEL +IA +K+
Sbjct: 285 YEYPHEIVPAGHTPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKY 338

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             YFL V D +++A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R 
Sbjct: 339 EPYFLTVYDIVKYARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERG 397

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
             PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+
Sbjct: 398 EPPDIDVDFEHQRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVE 457

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAS 526
           R+ K                D SR   AR A    DP V  +    EI+ +L    RH S
Sbjct: 458 RVAK-----------EHRWFDGSRDLLARFASVGLDPEVPLIRTWAEIAARLLNFPRHLS 506

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ 
Sbjct: 507 QHSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAF 566

Query: 587 DFL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
           D + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P  
Sbjct: 567 DMITAWRGPPLPDGRPFRLEHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRG 626

Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRK-----NGKEKIVSIHPLIDPMLKETQGVIIYQ 692
             D++  VS+ RPGPI    V  Y  R+         +I      ++ +L+ T G+ I+Q
Sbjct: 627 YYDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQ 686

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           EQVMQIA + +G++  EAD LRRAM   K K ++ K  ER ++G  + G S+  A  IFE
Sbjct: 687 EQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFE 746

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++
Sbjct: 747 QIKGFGEYGFPESHAASFAKLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKR 806

Query: 812 FNIQIMP 818
             + ++P
Sbjct: 807 HGVTVLP 813


>gi|167892674|ref|ZP_02480076.1| error-prone DNA polymerase [Burkholderia pseudomallei 7894]
          Length = 850

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 257/847 (30%), Positives = 396/847 (46%), Gaps = 79/847 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
            R+    L       L  L G      I    +   + V + +L  F  LFG+R  + L 
Sbjct: 124 YRLTPRMLAAP-PRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLV 182

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
           Q  R  D     QV        + +VA  +            D + A+     +++    
Sbjct: 183 QLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHA 242

Query: 247 RVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            + P  + +L+ R  +  +F    +AL  T  +   C F L               DD++
Sbjct: 243 -LAPNGEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DDLR 284

Query: 305 KEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            E  +E           L  +  AG   R   G           RQR++FEL +IA +K+
Sbjct: 285 YEYPHEIVPAGHTPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKY 338

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             YFL V D +++A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R 
Sbjct: 339 EPYFLTVYDIVKYARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERG 397

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
             PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+
Sbjct: 398 EPPDIDVDFEHQRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVE 457

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAS 526
           R+ K                D SR   AR A    DP V  +    EI+ +L    RH S
Sbjct: 458 RVAK-----------EHRWFDGSRDLLARFASVGLDPEVPLIRTWAEIAARLLNFPRHLS 506

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ 
Sbjct: 507 QHSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAF 566

Query: 587 DFL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
           D + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P  
Sbjct: 567 DMITAWRGPPLPDGRPFRLEHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRG 626

Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRK-----NGKEKIVSIHPLIDPMLKETQGVIIYQ 692
             D++  VS+ RPGPI    V  Y  R+         +I      ++ +L+ T G+ I+Q
Sbjct: 627 YYDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQ 686

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           EQVMQIA + +G++  EAD LRRAM   K K ++ K  ER ++G  + G S+  A  IFE
Sbjct: 687 EQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFE 746

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++
Sbjct: 747 QIKGFGEYGFPESHAASFAKLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKR 806

Query: 812 FNIQIMP 818
             + ++P
Sbjct: 807 HGVTVLP 813


>gi|323359224|ref|YP_004225620.1| DNA polymerase III, alpha subunit [Microbacterium testaceum StLB037]
 gi|323275595|dbj|BAJ75740.1| DNA polymerase III, alpha subunit [Microbacterium testaceum StLB037]
          Length = 1137

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 290/1067 (27%), Positives = 479/1067 (44%), Gaps = 124/1067 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HSSYS L+GA S   ++++       A+A+TD +  +  + F++ A A  +Q +
Sbjct: 59   YAELHAHSSYSFLDGASSPEELVEEAERLGLHALAVTDHDGFYGIVRFAEAAEARAVQTV 118

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L ++    L    +G+   P    +++L    EGY RL   ++   L    K    
Sbjct: 119  FGAELSLE----LPAPQKGEAD-PAGSHLLVLARGEEGYHRLAAAITHAQLTGAEKGRPV 173

Query: 131  ICLSWLQE----IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
              L+ L E           +LTG   G + +A      + A + L     LFG + ++V 
Sbjct: 174  YDLAELSERSGGPADPHWAVLTGCRKGAVRQALASAGPEAAARELDALVDLFGAEAVFVE 233

Query: 186  LQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L         R + V+  LA    LP++ATNN  +   E       + AV  +  + + D
Sbjct: 234  LMDQGNPLDSRHNDVLAGLAAERGLPILATNNVHYAVPEKELLAAAVAAVRANRGLDELD 293

Query: 245  RPRVTPDH---YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                 P H   +L++ +EM + F+  P A+  TV +A   +F L+   P LP+       
Sbjct: 294  G--WLPAHAGAHLRSGAEMAARFARYPGAVARTVTLADELAFPLRRAKPALPK------Q 345

Query: 302  DIQKEEE--NELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYF 357
            D+ +     + LR+         L   A+ + Y   + + R R++ EL VI    F GYF
Sbjct: 346  DVPEGHTPMSWLRH---------LVWEAVPRKYPNLSDEDRDRIERELGVIEMKDFPGYF 396

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV   +  A++  I +  GRGS A S   + L IT +D + + L FERFL+  R   PD
Sbjct: 397  LIVYGIVAEARRRGI-LCQGRGSAANSAVCFLLEITAVDSIFYKLPFERFLSSLRDEEPD 455

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  DRR+E+I++V   YG ER AQ+      + K A+RD+ RAL     Q D   K
Sbjct: 456  IDVDFDSDRREEIIQWVYETYGRERAAQVANVIQYRPKNAVRDMARALGHSPGQQDAWSK 515

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
             +    A   +L+  AD              D+++E + +L    RH   H+ G+V+ DR
Sbjct: 516  QVERWGA---TLETGADHD----------IPDQVIEFAAELLKAPRHLGIHSGGMVLTDR 562

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596
            P+ ++VP+      +  V Q++       GL+KFD LGL  L  LQ   D +    G   
Sbjct: 563  PVGEVVPIEHARMENRTVIQWDKDDAAWMGLVKFDLLGLGMLAALQYCFDLIRDATGEAW 622

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            +LS +P ++   Y +L    ++G+FQ+ES      L  +QP    D++  ++L RPGPI 
Sbjct: 623  ELSTLPKEEKAVYDMLCRADSIGVFQVESRAQMGLLPRLQPRKFYDLVVQIALIRPGPIQ 682

Query: 657  NIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
               V+    RK G+E+I  +HP + P+L+ T GV ++QEQ+MQ+A  +   +  +AD LR
Sbjct: 683  GGAVHPFVRRKLGQEEITYVHPKLKPVLERTMGVPVFQEQLMQMAVAVGNCTAEDADQLR 742

Query: 715  RAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RAMG K+  E +D  +E+   G ++NG+   +A  ++  +  FA++GF +SH+ ++A++ 
Sbjct: 743  RAMGSKRGLERIDSLREKLYEGMAENGLVGHVADELYAKIQAFANFGFAESHSLSFALLV 802

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV------------ 821
            Y ++W+K HYP  FLA  +  +            DAR+  +++  P +            
Sbjct: 803  YASSWIKLHYPAAFLAGLLRAQPMGFYSPATLTADARRHGVRVRRPDLLRSGVEAGMEPL 862

Query: 822  ------------------NTPCVDF------------KVGDNRIYYSLAAIKGVGTTTAR 851
                                P  +F            + G   +   LA + G+GT  A 
Sbjct: 863  DDAGERGPTGLDACAEAHQPPTGEFDRSEPDETAAHRRDGAFAVRLGLAGVTGIGTNVAE 922

Query: 852  HIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
             I+ E      +  + D   R     L    LE+L  AGA +  G+SR +          
Sbjct: 923  RIVSERERGGAYRDMRDLVRRT---GLITAQLEALATAGAFESLGHSRRE---------- 969

Query: 911  YAQWVEKNRTNKH-----ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             A W+  +          +++ A +   F+D  + E  +         ++    G     
Sbjct: 970  -AIWLSGSAALDRPEFLPDSLVAVQPPLFTDPTSYELLA---------SDLWATGLSADD 1019

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            HPL  ++  L   G+    E         I +A +V  +Q+  T  G
Sbjct: 1020 HPLTHFRSALDARGVLTSRELQTAETDRRIEVAGLVTHRQRPATASG 1066


>gi|323491954|ref|ZP_08097123.1| error-prone DNA polymerase [Vibrio brasiliensis LMG 20546]
 gi|323313812|gb|EGA66907.1| error-prone DNA polymerase [Vibrio brasiliensis LMG 20546]
          Length = 1023

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 240/763 (31%), Positives = 377/763 (49%), Gaps = 55/763 (7%)

Query: 181 RLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
           RL++ +QRH   D  +Y E    QLA  ++LP+ A    L  +         L A+ H  
Sbjct: 145 RLWIAVQRHLSSDDKQYLE-HCQQLATNNQLPITACGGVLMHTATRLPLQHTLTAIKHGC 203

Query: 239 VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            V+Q    R+T  +  L+++ ++  +F    E L+ +V IA+RC+F L            
Sbjct: 204 SVNQLGEQRLTNTERTLRSQEKLAKLFKS--EWLQESVAIAKRCTFSL------------ 249

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH-----AQDYRQRLDFELNVIARMK 352
              ++++ E  +EL       +   +A     K          D    +D EL +I  + 
Sbjct: 250 ---EELKYEYPSELVPDGHTPMSYLIALVEYGKKLRFPEGVPSDIAATIDKELALIDELN 306

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           +  YFL + D + +AK+N I +  GRGS A SV  Y L IT +DP + S+LFERF++ +R
Sbjct: 307 YPFYFLTIHDIVMFAKRNRI-LYQGRGSAANSVVCYCLEITSVDPRQISVLFERFISRER 365

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
              PD D+DF  +RR+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  SQ+
Sbjct: 366 DEPPDIDVDFEHERREEVIQYIYQKYGRERAALAATVISYRFKSAVRDVGKALGIEESQL 425

Query: 473 DRLCKLIP-NDPAHPVSLQAIADDSRFREARLADPSV--DRLLEISQKLEGLYRHASTHA 529
           D   K I   D A     Q +       E  L   S+  ++ + +   + G  RH S H 
Sbjct: 426 DYFIKNINRRDRAQGWQAQIV-------ELGLQPDSLKGEQFITLVNDILGFPRHLSQHV 478

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G +I   PL +LVP+      D  V Q++   +E   L+K D L L  LT ++K  D +
Sbjct: 479 GGFIIAAGPLYELVPVENASMDDRTVIQWDKDDLESLKLLKVDVLALGMLTAIRKCFDLI 538

Query: 590 A---QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
               QR + +       DD   Y ++    T+G+FQ+ES      L  ++P C  D++  
Sbjct: 539 ERIHQRTLSIAEITRRQDDSNVYRMIQKADTVGVFQIESRAQMSMLPRLKPACYYDLVIQ 598

Query: 647 VSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
           +++ RPGPI  D +  Y  R+NG+E +      +  +L+ T GV I+QEQV++IA + +G
Sbjct: 599 IAIVRPGPIQGDMVHPYLKRRNGEETVEYPSQEVRSVLERTLGVPIFQEQVIKIAMVAAG 658

Query: 705 YSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
           +S  EAD LRRAM   K   ++ K K + I G    G     A  IF  +  F +YGF +
Sbjct: 659 FSGGEADKLRRAMAAWKKNGDLVKFKTKLIEGMQARGYQLEFAERIFAQILGFGEYGFPE 718

Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
           SH+A++AV++Y +AW+K +YP  F  + +           +  QDAR+  + I+P  VN 
Sbjct: 719 SHSASFAVLAYCSAWLKHYYPEAFYTSLLNSLPMGFYSASQLVQDARRHGVDILPICVNA 778

Query: 824 PCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
              D +V    G   I   L  IKG    +AR ++ A A   F+      +++    LN+
Sbjct: 779 SLYDHQVVVDNGKLAIRLGLRQIKGFSAHSARQLIHARAKTGFNH----STQLKHIGLNQ 834

Query: 880 RVLESLVFAGALDCFGYSRMQ----LLQSLDNIQKYAQWVEKN 918
           R +E L  A A+     +R Q    ++ SL ++  + Q  E +
Sbjct: 835 RDVELLASANAMHSLSNNRYQTRWAMMDSLSDLPLFQQAEESD 877


>gi|254786885|ref|YP_003074314.1| DNA polymerase III subunit alpha [Teredinibacter turnerae T7901]
 gi|259645265|sp|C5BNE0|DNAE2_TERTT RecName: Full=Error-prone DNA polymerase
 gi|237683874|gb|ACR11138.1| putative DNA polymerase III, alpha subunit [Teredinibacter turnerae
            T7901]
          Length = 1033

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 281/1023 (27%), Positives = 465/1023 (45%), Gaps = 90/1023 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++ HL   S+++ L GA     ++++       AIA+TD  +L  A++    A   GI+ 
Sbjct: 2    AYAHLFTFSNFTFLRGASHPAEMVEQAYRLGYDAIALTDECSLAGAVKAHVMAEECGIKL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G    +     L      +  +  +   + L       +R  +       +D  +  +
Sbjct: 62   IVGSYFKLSNNCELIALAPDRAAYAELSGFITLA------RRRADKGEYTAHMDDLRFRL 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            + CL          +I L   ++   D A  F+++             F  RL++ +   
Sbjct: 116  QTCL----------IIWLPTANTATEDNARIFSAA-------------FKQRLWLGVGHQ 152

Query: 190  RGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247
                  R  Q  Q LA T++LP+VA++ +L  S E     DVL A+ H+T VSQ   R +
Sbjct: 153  LAGGEQRLFQQWQNLAATYQLPMVASHLALMHSAERKPLQDVLTAINHNTSVSQLGTRLQ 212

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR-FIEKECDDIQKE 306
               ++YLK   E+  ++   P  ++ T+ IA RC+F L       P+  + K    I   
Sbjct: 213  SNGENYLKAIDEVFYLYP--PGLIKQTLLIAERCNFSLNELKYQYPQELVPKGLSPIA-- 268

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR    +G   R   G  A+          L  EL +I  + +  YFL V D + +
Sbjct: 269  ---HLRALVDSGKARRWPGGVPAQA------EAILAKELALIEELHYEYYFLTVYDIVAF 319

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++ NI +  GRGS A SV  Y L IT+I P + ++LFERF++ +R   PD D+DF   R
Sbjct: 320  ARQQNI-LCQGRGSAANSVVCYCLFITEIAPGQINVLFERFISKERDEPPDIDVDFEHQR 378

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-----N 481
            R++VI+Y+  KY  +R A   T  S ++++A+RDVG+AL +  + VD L K +       
Sbjct: 379  REDVIQYIYTKYSRQRAALAATVISYRSRSAIRDVGKALGLDPALVDHLAKSLAWWDRTG 438

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            D    +    +  + +          V +   + Q++ G  RH S H  G VI    +S 
Sbjct: 439  DLVKRIEAAGVQTERQL---------VQQFFALVQQIIGFPRHLSQHVGGFVITQDKVSD 489

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSL 600
            LVP+         V Q++ + +E  GL+K D L L  LT L+K+L  + +    +  L+ 
Sbjct: 490  LVPVENASMPGRTVIQWDKEDLEAMGLLKVDILALGMLTALRKTLAMVNRYEPAIASLAD 549

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            IP +D  TY +L    T+G+FQ+ES      L  ++P    D++  +++ RPGPI  D +
Sbjct: 550  IPPEDPHTYDMLCAADTVGVFQIESRAQMSMLPRLRPRTFYDLVIEIAIVRPGPIQGDMV 609

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R++G E +    P I  +LK T GV I+QEQ +++A + +G+S  EAD LRRAM 
Sbjct: 610  HPYLRRRDGLEPVSYQSPDIADVLKPTLGVPIFQEQAIRLAMVAAGFSGGEADRLRRAMA 669

Query: 719  KKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
               K   + + +E FI G   NG     A  +FE +  F  YGF +SH+A++A++ Y ++
Sbjct: 670  SWGKNGNLLQFEETFIQGMLNNGYELDFAHRLFEQIKGFGGYGFPESHSASFAILCYASS 729

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K H+P  F  A +  +        +  QDAR+  I ++P  VN    +  +     Y 
Sbjct: 730  WLKCHHPAAFYCALLNSQPMGFYSPSQLIQDARRHGIPVLPVDVNHSEAESALEPANSYR 789

Query: 838  SLAA-------IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            +  A       IKG+ +  A+ I +  A +P+  ++    R     L+R  L+ L  A A
Sbjct: 790  TPWAIRLGFTRIKGLDSEAAQRIADNRAQQPYRDIQQLARR---SGLSRADLQKLAAADA 846

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
                       L SL   +  A W +         +F  E     D +     S+E    
Sbjct: 847  -----------LHSLAGNRHLAHW-QAASVEAQAGLFDDEPPP-GDALLTAPPSLEKD-- 891

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
               ++    G     HP+ + +        K   +      G  +++A +V  +Q+  T 
Sbjct: 892  -LTSDYNTTGLSLRVHPMGILRQEYPFSRCKQQRQLSGLSHGRFVQVAGLVTGRQRPGTA 950

Query: 1011 KGS 1013
            KG+
Sbjct: 951  KGT 953


>gi|162146502|ref|YP_001600961.1| putative error-prone DNA polymerase [Gluconacetobacter diazotrophicus
            PAl 5]
 gi|161785077|emb|CAP54621.1| putative Error-prone DNA polymerase [Gluconacetobacter diazotrophicus
            PAl 5]
          Length = 1069

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 286/1028 (27%), Positives = 471/1028 (45%), Gaps = 82/1028 (7%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E  PS+  LQ  ++YS L GA   + +  +  A    A+ I D + +   ++  + A   
Sbjct: 19   ESLPSYAELQAVTNYSFLRGASHPDELFARARALGHAALGIVDHDGVAGIVQSWKAAEKH 78

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV--SRMYLLD 123
            G++ ++GC+L   ++D               P ++   +    + RL  L+  S+    D
Sbjct: 79   GVRLVVGCRLV--LRDG--------------PPLLAYPTDRAAWGRLCRLLTASKRKAAD 122

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDRL 182
                 +R   + L    T+GLI++              +    A  R L + + L GDR 
Sbjct: 123  GTAPGLR--RADLHR-ATDGLILI-----------LLPDDPDAALARDLDWLRALCGDRG 168

Query: 183  YVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ L  R R  D  R  ++ ++A    +  V T + L+         DVL  +     + 
Sbjct: 169  YLALTLRRRPGDAVRLHRLAEMARAAGVADVVTGDVLYHEPARAMLQDVLTCIRTGCTID 228

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKE 299
            +  + R    D +LK+ +EM  +++  P AL  T EIA RC+F     +P   R+   +E
Sbjct: 229  ELGQGREAYADRHLKSPAEMAVLYAAHPAALARTREIAARCTF-----SPADLRYQYPEE 283

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             DD  +  ++ L   A A L  R   GA          R+++++EL +I  + ++ YFL 
Sbjct: 284  SDDPSETPQDRLERLARAALRDRYPAGA------PDPVRRQVEYELGLIRDLHYAPYFLT 337

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V   ++ A+   I +  GRGS A S   + L IT+IDP   +LLFERF++ +R   PD D
Sbjct: 338  VHTIVRQARSQGI-LCQGRGSAANSAVCFVLGITEIDPASSNLLFERFVSAERQEPPDID 396

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EVI+++  +YG +R A   T    +A+ ALRDVG+ L +P    D    L 
Sbjct: 397  VDFESERREEVIQWIYRRYGRDRAALCATTMRYRARGALRDVGKVLGLP---ADVTGLLS 453

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +  A      A  + +R     L +  +   L+++ +L G  R   TH  G V+    L
Sbjct: 454  THLGALSFDEDAFHERARELGLNLRNRRLLLTLQLAGELIGFPRQLGTHPGGFVLTRDRL 513

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
              LVP+      D  +  ++   I+    +K D LGL  L  ++++ D L    G ++ L
Sbjct: 514  DDLVPIQPAAMDDRQIIVWDKDDIDTLRFMKVDVLGLGMLGCMRRAFDMLEDHYGKRLTL 573

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
            S IP  D +TY +++   T+G FQ+ES      L  M+P    D++  V++ RPGPI  D
Sbjct: 574  SGIPPGDADTYAMISRADTIGTFQIESRAQMAMLPRMKPREFYDLVIQVAIVRPGPIQGD 633

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+  +  +    P +  +L +T GV ++QEQ MQIA   +G++  EAD LRRA
Sbjct: 634  MVHPYLQRRADRSLVDYPSPELRDILHKTLGVPLFQEQAMQIAIRCAGFTPGEADALRRA 693

Query: 717  MGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            MG  +    +   ++R I G       +  A  IF  L  F  YGF +SHAA++A+I+Y 
Sbjct: 694  MGTFRGHGTVTYFRDRLIDGMMARHYPRDFAERIFRQLEGFGSYGFPESHAASFALIAYA 753

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---- 831
            ++WMK HYP  F AA +  +     +  +  +DAR   + + P  VN    D  +     
Sbjct: 754  SSWMKCHYPDVFCAALLNSQPMGFYRPAQIVRDARNHGVTVHPVCVNASRWDCTLERAPG 813

Query: 832  -DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                +   L  +KG+  T A  ++ AS   P+D +ED   R     L    LE L  A A
Sbjct: 814  RSTAVRLGLRMVKGLSNTDAARLV-ASRMPPYDGIEDVWRR---SGLGPDALECLAQADA 869

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSVENSS 949
                G  R           + A W  K        +F A ++G         + SV  ++
Sbjct: 870  FHALGRDR-----------RAALWDIKGLAESPLPLFAAADRGLNRPLPECVEPSVPLTA 918

Query: 950  VRFENEQRVLGFYFSG-----HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
            +  E ++ V  ++ +G     HP+   +  LR  G+    +  A   G  + +  +V+ +
Sbjct: 919  M-TEGQEVVEDYHATGLTLRRHPVAFLRDGLRDRGMIACADLRALRDGRRVVVPGLVLMR 977

Query: 1005 QQKKTRKG 1012
            Q+  T +G
Sbjct: 978  QRPGTAQG 985


>gi|330942778|gb|EGH45303.1| error-prone DNA polymerase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 873

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 257/867 (29%), Positives = 414/867 (47%), Gaps = 67/867 (7%)

Query: 174  FKKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
             ++ F +RL++ +  HRG D   R + ++ LA +  +P VA+ +    +       D + 
Sbjct: 22   LRERFTERLWLGVGLHRGPDDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMT 81

Query: 233  AVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
            A+ H T V++         + +L+    +   + D    L  +V IARRC+F L      
Sbjct: 82   AIRHHTTVAEAGHLLFANGERHLRPLDALSEHYPDW--LLAESVRIARRCTFDLGDLKYE 139

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             P     E     +   + LR     G+  R   G           R +++ EL +IA  
Sbjct: 140  YP----HELVPKGQTSTSWLRELTERGVRRRWPSGLTPA------TRAQVEKELALIAEK 189

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            KF  YFL V D +++A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +
Sbjct: 190  KFDSYFLTVHDIVEFARSQHI-LCQGRGSAANSAVCYALGITELNPEQSNLLFERFISRE 248

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+DF  DRR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q
Sbjct: 249  RNEPPDIDVDFEHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPDQ 308

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARL-AD-PSVDRLLEISQKLEGLYRHASTHA 529
            ++ L +      A      ++    R RE    AD P + R+L ++ +L G  RH S H 
Sbjct: 309  INALAE------AFSRWSDSLPSPERLREYGFDADTPILKRVLALTGELIGFPRHLSQHP 362

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G VI + PL  LVP+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +
Sbjct: 363  GGFVISEHPLETLVPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLV 422

Query: 590  A-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
               RG +  L+ +P DD +TY +++   T+G+FQ+ES      L  ++P+   D++  V+
Sbjct: 423  HLHRGQRWTLATLPGDDRKTYEMISRADTVGVFQIESRAQMAMLPRLRPEKFYDLVIEVA 482

Query: 649  LYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            + RPGPI  D +  Y  R+NG+E  V+  P ++ + K T GV ++QEQVM++A L + Y+
Sbjct: 483  IVRPGPIQGDMVHPYLRRRNGEEA-VTYPPKLESVFKRTLGVPLFQEQVMEVAILAADYT 541

Query: 707  LSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
              EAD LRRAM   K    ++  +ER  +G  KNG     A  IFE +  F  YGF +SH
Sbjct: 542  PGEADELRRAMAAWKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESH 601

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AA++A+++Y + W+K H P  F  A +           +  QDAR+ +I+I P  V    
Sbjct: 602  AASFALLTYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSD 661

Query: 826  VDF---------KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
             D          +  +  I   L  ++      A  I  A A +PF    D   R +   
Sbjct: 662  WDCSLEPLDHPDRTRNLAIRLGLRMVRSFREEDALRIEAARAKRPFVDATDLTLRAE--- 718

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            L+ R  E+L  +GA           L+ L   +  A+W E         +F  +  +   
Sbjct: 719  LDSRAAEALADSGA-----------LRGLIGHRHRARW-EVAGVEAQRPLF-DDLPSEET 765

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            ++ L   +V    V    +   LG     HPL + +   R++  K +  S   +   N R
Sbjct: 766  QVILPLPTVAEDLV---ADYTTLGTTLGPHPLALLR---RQLAAKRFRSSQDLLHLENDR 819

Query: 997  ---LAAMVVSKQQKKTRKGSRIGWVTF 1020
               +A +V+ +Q+  T  G     VTF
Sbjct: 820  TLSVAGLVIGRQRPGTASG-----VTF 841


>gi|196234154|ref|ZP_03132987.1| DNA-directed DNA polymerase [Chthoniobacter flavus Ellin428]
 gi|196221805|gb|EDY16342.1| DNA-directed DNA polymerase [Chthoniobacter flavus Ellin428]
          Length = 725

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 226/737 (30%), Positives = 375/737 (50%), Gaps = 35/737 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           ++V L   S++S L GA     + ++ A    PA+A+ D + ++ A  F  K+     + 
Sbjct: 4   AYVELHTRSAFSFLRGASLPEQLAERAAELNLPAVALCDRDGVYGAPRFYNKS-----KE 58

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I   +   + +   ++    +        + +LV +  GYQ L  L+++  L    K   
Sbjct: 59  IEAGKEGEEKKSKPRLILGAELTLEDGAVLPVLVESRTGYQNLCRLITQAKLRGT-KTDA 117

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
            +  S L E  TEGL+ LTG   GPI R    +    A +R+   ++ FGD+ ++V +QR
Sbjct: 118 PVYWSELAEF-TEGLVALTGDEEGPIARCLERDDLAGARERVTRLRRAFGDKNVFVEVQR 176

Query: 189 H--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
           H  RG +  R  Q+  LA    LPL+ATN   +   E     DV     H T +    R 
Sbjct: 177 HLQRG-EELRIRQLADLAGAERLPLLATNGVQYSIPEQRGVLDVFTCARHHTHLDAAGRL 235

Query: 247 -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                + YLK+ ++M  +F+DLPEA++NTV +A R  F L       P F   E + +  
Sbjct: 236 LSANGERYLKSAAQMAKLFTDLPEAIDNTVALAERLHFTLADLGYKFPTFPVPEGESMA- 294

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                LR + +AG   R       + ++ +  RQ +D EL +I ++ F GYFL + D ++
Sbjct: 295 ---TYLRKQVLAGARAR------CRNFNERTLRQ-IDHELGLIEQLGFCGYFLCIWDLVE 344

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF-CQ 424
           +AKK++I +  GRGS A SV  ++L IT  DP+ ++LLFERFL   R + PD D+D    
Sbjct: 345 FAKKSDIMI-QGRGSAANSVVCFSLGITACDPIEYNLLFERFLAEGRNTWPDIDLDLPSG 403

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DP 483
           DRR+ VI+ V  ++G    A      + + ++A+R++G+AL      + R   L  N D 
Sbjct: 404 DRRESVIQEVYRRFGKHGAAMTANVITFRGRSAMREIGKALNFSLESIGRFSALFANGDF 463

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            H + L A    +   +     P  +    + Q + GL RH   H+ G++I    LS  +
Sbjct: 464 PHTLDLLAQLTQAGIPKDH---PRAEAAAYLYQMIRGLPRHLGQHSGGMIICQNQLSSFI 520

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
           P+         V Q++    E  G+IK D LGL  +++LQ+++    QRG KV+L  +P 
Sbjct: 521 PLENASMPGRVVAQWDKDDCEDLGIIKVDLLGLGMMSVLQETIQLSEQRGHKVELYEVPA 580

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
           DD ETY ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI   ++  Y
Sbjct: 581 DDPETYEMIRAADTIGLFQIESRAQMATLPRLKPKCFYDLVVEVAIVRPGPIQGGLMHPY 640

Query: 662 NNRKNGKEKIVSIHP----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
             R+  +E+ V +H     ++ P L+ T GV ++QEQ+++++  L+ ++ SEA+ LRRA+
Sbjct: 641 LKRRCNQEEHVYVHKDVEEILRPTLERTLGVPLFQEQMLKMSMDLADFNGSEAEELRRAL 700

Query: 718 GKKIKEEMDKQKERFIS 734
                 + D++  R ++
Sbjct: 701 SFHRSHDRDERGLRQVA 717


>gi|188992639|ref|YP_001904649.1| hypothetical protein xccb100_3244 [Xanthomonas campestris pv.
            campestris str. B100]
 gi|254777928|sp|B0RY89|DNAE2_XANCB RecName: Full=Error-prone DNA polymerase
 gi|167734399|emb|CAP52609.1| dnaE1 [Xanthomonas campestris pv. campestris]
          Length = 1082

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 273/1030 (26%), Positives = 471/1030 (45%), Gaps = 90/1030 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G++
Sbjct: 46   PAYAELHCLSDFSFLRGASSAEQLFARAHHCGYSALAITDECSLAGIVRGLEASRATGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +     +  T             VLLV  A GY +L  +++       GK +
Sbjct: 106  LIVGSEFTL-----IDCTR-----------FVLLVENAHGYPQLCSVITTGRRA-AGKGA 148

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + ++    + +         P   A +    Q   ++    +++F +R ++ ++ 
Sbjct: 149  YRLGRAEVEAHFRDVV---------PGVFALWLPGDQPQAEQGAWLQRVFAERAFLAVEL 199

Query: 189  HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D   R   +  LA    +  +A+ +       D    D L A+ H+  ++      
Sbjct: 200  HREQDDAARLQALQALAQQLGMSALASGDVHMAQRRDRIVQDTLTAIRHTLPLADCGAHL 259

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                + +L+ R  + +I+   P AL + +VE+A+RC+F L       PR +  +      
Sbjct: 260  FRNGERHLRPRRALGNIY---PHALLQASVELAQRCTFDLSKVQYTYPRELVPQ----GH 312

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR    AG+  R  +GA A      +   ++D EL +IA   +  +FL V D ++
Sbjct: 313  TPASYLRQLTEAGMRERWPEGAPA------NVVAQIDSELELIAYKGYEAFFLTVQDVVR 366

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S   YAL IT ++P    LL  RFL+ +R   PD D+DF  +
Sbjct: 367  FARAQHI-LCQGRGSSANSAVCYALGITAVNPSETRLLMARFLSKERDEPPDIDVDFEHE 425

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L          
Sbjct: 426  RREEVLQYVYTKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGD 485

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                Q IA+        LA+P ++++L +++ L    RH S H  G VI D PLS LVP+
Sbjct: 486  TPMEQRIAEAG----FDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSMLVPV 541

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604
                 +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P +
Sbjct: 542  ENAAMADRTIIQWDKDDLETMQLLKVDCLALGMLTCIRKTLDLVRGHRGRDYTIATLPGE 601

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y 
Sbjct: 602  DAATYKMIQRADTVGVFQIESRAQMAMLPRLKPREFYDLVIEVAIVRPGPIQGDMVHPYL 661

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+ G E +    P ++ +L  T G+ ++QEQVM++  + +GY+ SEAD LRR+M   + 
Sbjct: 662  RRRQGYEPVSFPSPGVEEILGRTLGIPLFQEQVMELV-IHAGYTDSEADQLRRSMAAWRR 720

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              +M+  + R     +  G +      IFE +  F  YGF +SHAA++A + Y + W+K 
Sbjct: 721  GGDMEPHRVRIRELMAGRGYAPEFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKR 780

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-----IQIMPPSVNTPCVDFKVGDNRIY 836
            H P  F    +  +        +  QDAR+ +     ++++P  V     D  +   R +
Sbjct: 781  HEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERQRVEVLPVDVLHSDWDNILVGGRPW 840

Query: 837  YS-------------LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            +S             L  + G+       I+ A A +PF  + D C R     L+ +   
Sbjct: 841  HSDADPGEQPAIRLGLRQVSGLSEKVVERIVAARAQRPFADIGDLCLRA---ALDEKARL 897

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            +L  AGA           LQS+   +  A+W       +   +     G+ +++    + 
Sbjct: 898  ALAEAGA-----------LQSMVGNRNAARWAMAGVEARRPLL----PGSPAERAV--EL 940

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                +      + R +G     HP+ + +P + +  I G  E  A   G+ + +A +V  
Sbjct: 941  PAPRAGEEILADYRAVGLSLRQHPMALLRPQMLQRRILGLRELQARRHGSGVHVAGLVTQ 1000

Query: 1004 KQQKKTRKGS 1013
            +Q+  T KG+
Sbjct: 1001 RQRPATAKGT 1010


>gi|78046782|ref|YP_362957.1| DNA polymerase III alpha chain protein [Xanthomonas campestris pv.
            vesicatoria str. 85-10]
 gi|123585634|sp|Q3BWA6|DNAE2_XANC5 RecName: Full=Error-prone DNA polymerase
 gi|78035212|emb|CAJ22857.1| DNA polymerase III alpha chain protein [Xanthomonas campestris pv.
            vesicatoria str. 85-10]
          Length = 1082

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 273/1032 (26%), Positives = 471/1032 (45%), Gaps = 94/1032 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G++
Sbjct: 46   PAYAELHCLSDFSFLRGASSAEQLFVRAQHCGYSALAITDECSLAGIVRGLEASRATGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +    + D  +               VLLV  A GY +L  L++        K +
Sbjct: 106  LIVGSEFA--LVDGTR--------------FVLLVENAHGYPQLCGLITTARRA-ASKGA 148

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + +Q    +           P   A +   +Q   ++    +++FG+R ++ ++ 
Sbjct: 149  YRLGRAEVQAQFRD---------VAPGVFALWLPGAQPQAEQGAWLQQVFGERAFLAVEL 199

Query: 189  HRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D     QV+Q LA    +  +A+ +       +    D L A+ H+  +++     
Sbjct: 200  HREQDDVARLQVLQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRHTLPLAECGAHL 259

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  + +I+ D    L+ TVE+A+RC+F +       PR +  +       
Sbjct: 260  FRNGERHLRTRRALGNIYPD--GLLQATVELAQRCTFDISKLQYTYPRELVPQ----GHT 313

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR    AG+  R   G   K       R  ++ EL +IA +++  +FL V D +++
Sbjct: 314  PASYLRQLTEAGMRERWPDGVPKK------IRDDIENELALIAELEYEAFFLTVQDVVRF 367

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A S   YAL+IT +DP +  LL  RFL+  R   PD D+DF  +R
Sbjct: 368  ARSKDI-LCQGRGSSANSAVCYALSITSVDPSKTRLLISRFLSKARNEPPDIDVDFEHER 426

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAH 485
            R+EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L       +   
Sbjct: 427  REEVLQYVYAKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGET 486

Query: 486  PVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            P+       + R  EA   LA+P ++++L ++  L    RH S H  G VI D PLS LV
Sbjct: 487  PM-------EQRIEEAGFDLANPLINKILLVTDHLRDHPRHLSQHVGGFVISDEPLSLLV 539

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
            P+     +D  + Q++   +E   L+K D L L  LT ++K+LD +   R     L+ +P
Sbjct: 540  PVENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRHRDYTLATLP 599

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+ 
Sbjct: 600  DEDAATYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHP 659

Query: 663  NRKNGKEKIVSIHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
              +  K+K +  +P   ++ +L  T G+ ++QEQVM++  + +GY   EAD LRR+M   
Sbjct: 660  YLQRRKDKSLINYPSEGVEQILGPTLGIPLFQEQVMELV-IHAGYDPDEADKLRRSMAAW 718

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            +   +M+  + R  +     G + +    IFE +  F  YGF +SHAA++A + Y + W+
Sbjct: 719  RRGGDMESHRLRIRALMEGKGYASSFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWL 778

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-----IQIMPPSVNTPCVDFKVGDNR 834
            K H P  F    +  +        +  QDAR+ +     ++++P  V     D  +   R
Sbjct: 779  KRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWDNTLVGGR 838

Query: 835  IYYSLA-------------AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
             + S A              + G+    A+ I+ A   + F  + D C R     L+ + 
Sbjct: 839  PWRSAADPGEQPAIRLGMRQVAGLSQVVAQRIVAARTQRAFADIGDLCLRA---ALDEKA 895

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
              +L  AGA           L  L   +  A+WV      +   +     G+  ++    
Sbjct: 896  RLALAEAGA-----------LHGLVGNRNAARWVMAGVEARRPLL----PGSPEERPV-- 938

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
             F    +      + R +G     HP+ + +P +R+  I G  E      G+ + +A +V
Sbjct: 939  AFEAPRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRRHGSGVHVAGLV 998

Query: 1002 VSKQQKKTRKGS 1013
              +Q+  T KG+
Sbjct: 999  TQRQRPATAKGT 1010


>gi|307943857|ref|ZP_07659201.1| error-prone DNA polymerase [Roseibium sp. TrichSKD4]
 gi|307773487|gb|EFO32704.1| error-prone DNA polymerase [Roseibium sp. TrichSKD4]
          Length = 1135

 Score =  334 bits (857), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 278/1040 (26%), Positives = 468/1040 (45%), Gaps = 96/1040 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F  L   S++S L GA     +  + A     A+AI D N++   +     A  AG++ 
Sbjct: 20   GFAELCAASNFSFLHGASHPEELAMRAADLGLKALAICDRNSVAGVVRAHMAAKEAGLRF 79

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + GC+L                     P +++     +GY RL    SR+  +   +   
Sbjct: 80   VPGCRLGF---------------LDGTPDLLVWPKHRQGYGRL----SRLLTIGNRRAEK 120

Query: 130  RIC------LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
              C      L+ L +     L++  G  S             +A+  L   K + G  L 
Sbjct: 121  GCCHLLPDDLTHLDQGSVTALVLPPGLPS---------PDEMIAD--LQGLKAVLGSDLR 169

Query: 184  VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVS 241
            + +   +G  DR R    V+LA   ++ L+ATN+ L+   E     DVL  +  H  + +
Sbjct: 170  LAVSLSKGPADRRRLDLAVRLAQLSDVKLLATNDVLYHVLERRPLQDVLTCIRLHERLET 229

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
               +     + YLK+  +M  +F    +AL  ++ I    SF L   A   P   E+ C 
Sbjct: 230  AGRQLEANAERYLKDAEDMARLFDGAEDALYESLRILEELSFSLDDLAYEYP---EEPCG 286

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D     + EL   A  G + R   G   K   A      ++ EL ++A + ++ YFL V 
Sbjct: 287  D-SASPQAELERLAEEGAKRRYPNGVPDKVTKA------INHELKLVAELDYAPYFLTVY 339

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +++A+   I +  GRGS A SV  + L IT++DP R  LLFERF++P+R   PD D+D
Sbjct: 340  DIVRFARSRGI-LCQGRGSAANSVVCFCLGITEVDPARADLLFERFISPERRESPDIDVD 398

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EVI+Y+  KYG ER     T  + + ++ALR+VG+   +    +  L   I  
Sbjct: 399  FEHERREEVIQYIYEKYGRERSGLAATVITYRTRSALREVGKVFGLSEDAIGALSGTIWG 458

Query: 482  DPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              +   S      + +  EA +   DP + +++E+   L G  RH S H  G VI    L
Sbjct: 459  HSSSEAS------EGQVVEAGMDPKDPMLGQMMELVDTLIGFPRHLSQHVGGFVITKGRL 512

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
             ++VP+      D  V +++   ++  G++K D L L  L+ ++K+LD L++  G    +
Sbjct: 513  DEVVPIQNAAMEDRTVIEWDKDDLDALGILKIDILALGMLSAIRKALDMLSENYGCDYTV 572

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
            + IP ++ E Y +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI  D
Sbjct: 573  ATIPPEEPEVYDMLCRADSIGVFQVESRAQMTMLPRLKPQAFYDLVIEVAIVRPGPIQGD 632

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+ G EK+      ++ +L +T GV ++QEQ M+IA + +G++  EAD LRRA
Sbjct: 633  MVHPYLRRRQGLEKVTYPSRELEEVLGKTMGVPLFQEQAMKIAIVAAGFTPGEADRLRRA 692

Query: 717  MGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M   +    +   + + I G +KNG  +  A   F  +  F +YGF +SHAA++A++ Y 
Sbjct: 693  MATFRRVGTIGTFQTKMIEGMAKNGYDRDFAERCFRQIEGFGEYGFPESHAASFALLVYA 752

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF------- 828
            ++W+K  YP  F AA +  +        +  +DAR+  +++    +N    D        
Sbjct: 753  SSWIKARYPDVFCAALLNSQPMGFYAPAQLVRDAREHGVEVREVDINMSDWDAGLEPGNC 812

Query: 829  -------KVGDNR--------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                   K  D R        +     +IKGV       I+ A   + +DS+ D   R  
Sbjct: 813  AADRLHRKHADMRGTIQSNKAVRLGFRSIKGVRQDDM-EILVAMRGEGYDSVRDLWLRT- 870

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKG 932
               L R V+  L  A A    G  R   L +       AQ +E+ +      +F   + G
Sbjct: 871  --GLGRPVIMRLAEADAFRSLGLDRRTALWA-------AQGLERGKVQDRLPLFDTADAG 921

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                +   +  S+   +    + Q  L      HP+   +P L++  +    E      G
Sbjct: 922  DLRPEPNADLPSMPPGAHVMADYQ-TLSLSLKAHPVAFARPALQRQRVVPCMELDRLRSG 980

Query: 993  NNIRLAAMVVSKQQKKTRKG 1012
             ++ +A +V+ +Q+  + KG
Sbjct: 981  CHVTVAGLVLVRQRPGSAKG 1000


>gi|325917073|ref|ZP_08179309.1| DNA polymerase III, alpha subunit [Xanthomonas vesicatoria ATCC
            35937]
 gi|325536737|gb|EGD08497.1| DNA polymerase III, alpha subunit [Xanthomonas vesicatoria ATCC
            35937]
          Length = 1083

 Score =  334 bits (856), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 271/1033 (26%), Positives = 468/1033 (45%), Gaps = 95/1033 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G++
Sbjct: 46   PDYAELHCLSDFSFLRGASSAEQLFARARDCGYSALAITDECSLAGIVRGLEASRATGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +    + D  +               VLLV  A GY +L  L++        +++
Sbjct: 106  LIVGSEFT--LVDGTR--------------FVLLVENAHGYPQLCGLIT------TARRA 143

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                   L     E           P   A +   +Q    +    +++FG+R ++ ++ 
Sbjct: 144  ASKGAYRLGRAEVEAQFR----DVAPGVFALWLPGAQPQVGQGAWLQQVFGERAFLAVEL 199

Query: 189  HRGYDRYRESQVVQLAYTHE-LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D     Q +Q       +  +A+ +       +    D L A+ H+  +++     
Sbjct: 200  HREQDDVARLQALQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRHTLPLAECGAHL 259

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  + +I+ D    L+ TVE+A+RC+F +   +   PR +  E    +  
Sbjct: 260  FRNGERHLRTRRALGNIYPD--ALLQATVELAQRCTFDISKISYSYPRELVPE----EHT 313

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     G+  R   G   K       R+ ++ EL +IA  ++  +FL V D +++
Sbjct: 314  PTSYLRQLTEEGIRERWPDGISTK------VREDIEKELALIALKRYEAFFLTVQDVVRF 367

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I +  GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF  +R
Sbjct: 368  ARSRQI-LCQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHER 426

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL--CKLIPNDPA 484
            R+EV++YV NKYG ER A   T    + K+A+RDV +A  +P  Q+  L  C    N   
Sbjct: 427  REEVLQYVYNKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGDT 486

Query: 485  HPVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
             P+       + R  EA   LA+P ++++L +++ L    RH S H  G VI D PLS L
Sbjct: 487  -PM-------EQRIEEAGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSLL 538

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLI 601
            VP+     ++  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +
Sbjct: 539  VPVENAAMANRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYSIATL 598

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D + 
Sbjct: 599  PGEDAPTYKMIQHADTVGVFQIESRAQMAMLPRLKPAVFYDLVIEVAIVRPGPIQGDMVH 658

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+ G+E++    P ++ +LK T GV ++QEQVM++    + Y+ SEAD LRR+M  
Sbjct: 659  PYLRRRQGREEVNYPSPEVEDILKPTLGVPLFQEQVMELLMHAAEYTESEADNLRRSMAA 718

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             +   +M++ + R      K G +      IFE +  F  YGF +SHAA++A + Y + W
Sbjct: 719  WRRGGDMEQHRARVRERMQKRGYASAFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCW 778

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-----IQIMPPSVNTPCVDFKVGDN 833
            +K H P  F    +  +        +  QDAR+ +     ++++P  V     D  +   
Sbjct: 779  LKRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERARVEVLPVDVLHSDWDNTLVGG 838

Query: 834  RIYYS-------------LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
            R + S             +  + G+    A+ I+ A   + F  + D C R     L+ +
Sbjct: 839  RPWRSDADPGEQPAIRLGMRQVAGLSEVVAQRIVAARTQRTFADIGDLCLRA---ALDEK 895

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
               +L  AGA           LQ +   +  A+W       +   +     G+  ++   
Sbjct: 896  ARLALAEAGA-----------LQGMVGNRNAARWAMAGVEARRPLL----PGSPEERPV- 939

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
             +F    +      + R +G     HP+ + +P +++  I G  +      G+ + +A +
Sbjct: 940  -EFEAPRAGEEILADYRSVGLSLRQHPMALLRPQMQQRRILGLRDLRGRRHGSGVHVAGL 998

Query: 1001 VVSKQQKKTRKGS 1013
            V  +Q+  T KG+
Sbjct: 999  VTQRQRPATAKGT 1011


>gi|312882444|ref|ZP_07742185.1| error-prone DNA polymerase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369844|gb|EFP97355.1| error-prone DNA polymerase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 1023

 Score =  334 bits (856), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 236/744 (31%), Positives = 376/744 (50%), Gaps = 57/744 (7%)

Query: 181 RLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
           RL++ +QRH G D  RY E    +LA+   LP+ A    L  + +       L A+ H+ 
Sbjct: 145 RLWLGIQRHLGPDDKRYLEHSQ-KLAHEIALPITACGGVLMHTADRLPLQHTLSAIKHNC 203

Query: 239 VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            + +  +R     +  L+++ ++  +F    E +  +  IA+ C F L            
Sbjct: 204 KIEELGERMLTNSERSLRSQEKLSKLFK--AEWMLESTHIAKLCKFNL------------ 249

Query: 298 KECDDIQKEEENELRNK---AVAGLEVRLAQGA---IAKGYHAQDYRQRLDFELNVIARM 351
              D+IQ E  +EL  K    ++ L+  + QG      +G  A D +  +D EL +I  +
Sbjct: 250 ---DEIQYEYPSELVPKDHTPISYLKYLVEQGKKIRFPEGISA-DIQHTIDKELALIEEL 305

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            +  YFL + D + +AK++ I +  GRGS A SV  Y L IT +DP + S+LFERF++ +
Sbjct: 306 NYPFYFLTIHDIVMFAKRSQI-LYQGRGSAANSVVCYCLEITSVDPRQISVLFERFISKE 364

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R   PD D+DF  +RR+EVI+Y+  KYG ER A   T  + + K+A+RDVGRAL +  SQ
Sbjct: 365 RDEPPDIDVDFEHERREEVIQYIYKKYGRERAALAATVITYRFKSAIRDVGRALGIEASQ 424

Query: 472 VDRLCKLIP-NDPAHPVSLQAIADDSRFREARLADPSV---DRLLEISQKLEGLYRHAST 527
           +D   + +   D       Q +A           +PS     + +E+  ++ G  RH S 
Sbjct: 425 LDFFIRNVDRRDRKQNWQAQIVALG--------LEPSSLKGQQFIELVSRIIGFPRHLSQ 476

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           H  G VI   PL  LVP+      D  V Q++   +E   L+K D L L  LT ++K   
Sbjct: 477 HVGGFVITSGPLYDLVPIENAAMPDRTVIQWDKDDLESLKLLKVDILALGMLTAIRKCFS 536

Query: 588 FLAQRGVKVDLSLIPF----DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +     K  LS+       DD + Y ++    T+G+FQ+ES      L  ++P    D+
Sbjct: 537 LIKDLN-KHTLSIADITRRQDDDDVYQMIQNADTVGVFQIESRAQMNMLPRLRPKTYYDL 595

Query: 644 IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
           +  +++ RPGPI  D +  +  R+NG E++V     +  +L+ T GV I+QEQV++IA +
Sbjct: 596 VIQIAIVRPGPIQGDMVHPFLKRRNGIEQVVYPSREVKDVLERTLGVPIFQEQVIKIAMV 655

Query: 702 LSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +G+S  EAD LRRAM   K   E+ K K + + G +K G S   A  +FE +  F +YG
Sbjct: 656 AAGFSGGEADQLRRAMAAWKKNGELIKFKTKLVDGMTKRGYSMEFAHQLFEQILGFGEYG 715

Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
           F +SH+A++AV++Y +AW+K HYP  F A+ +           +  QDA++ N+ ++P  
Sbjct: 716 FPESHSASFAVLAYCSAWLKYHYPEAFYASLLNSLPMGFYSASQLVQDAKRHNVIVLPVC 775

Query: 821 VNTPCVDFKVGDN----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
           +NT   D++V  +     I      IKG    +A  I++    + F  +    ++V    
Sbjct: 776 INTSTYDYQVVKHLNKLAIRLGFRQIKGFSRASANSIVQLRPSQGFTHI----NQVKQCH 831

Query: 877 LNRRVLESLVFAGALDCFGYSRMQ 900
           LN++ +E L  A AL C    R Q
Sbjct: 832 LNKKDIELLSSADALYCLNQHRYQ 855


>gi|167561429|ref|ZP_02354345.1| error-prone DNA polymerase [Burkholderia oklahomensis EO147]
          Length = 837

 Score =  334 bits (856), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 243/828 (29%), Positives = 389/828 (46%), Gaps = 48/828 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S + ++++  A     IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSADELVERAKAHGYRGIAITDECSLAGAPRMHVAANAKGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G   D+   D       G  P P    +VLL    EGY  L EL+S    +D  K +
Sbjct: 69  LVVGAYFDVTPDD----VAPGHDPGPGAFGLVLLARNREGYGNLSELIS-WRRMDAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            R+    L    +    +        I    +   + + + +L  F  LFG+R  + L Q
Sbjct: 124 YRLTPRMLAAPPSTFAHLRGVPDCFAILVPTYPARADMLDAQLAWFDALFGERARLGLVQ 183

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D     ++        + +VA  +    +       D + A+     +++     
Sbjct: 184 LQRALDGAHREEIRAAGERRGMRIVALGDVTMHARSCKPLQDAMTAIRLGMPIAECGYA- 242

Query: 248 VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           + P  + +L+ R  +  +F    EA+  T  I   C F L       PR +  E      
Sbjct: 243 LAPNAEQHLRLRQRIAQLFPA--EAIAETCRILDACDFSLDELRYEYPRELVPE----GH 296

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + LR +  +G   R   G           ++R+ +EL +IA +K+  YFL V D +Q
Sbjct: 297 TPTSYLRRETWSGAHRRYPDGV------PDTVQERIRYELELIAELKYEPYFLTVYDIVQ 350

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+  +I +  GRGS A SV  + L +T++ P + SLLFERF++ +R   PD D+DF   
Sbjct: 351 YARSRDI-LCQGRGSAANSVVCFCLGVTEVHPEKSSLLFERFISRERGEPPDIDVDFEHQ 409

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 410 RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAK-------- 461

Query: 486 PVSLQAIADDSRFREARLAD-------PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                   D SR   AR          P +    E++ +L G  RH S H+ G VI    
Sbjct: 462 ---EHRWFDGSRDLLARFESVGLDPDTPLIRAWAELAARLLGFPRHLSQHSGGFVISRGK 518

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK-- 595
           L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ D + A RG +  
Sbjct: 519 LTRLVPVENAAMEGRRVIQWDKNDLEALGLMKVDVLALGMLSALHRAFDMITAWRGRRDG 578

Query: 596 --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
               +  IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPG
Sbjct: 579 QPFGMESIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRDYYDLVIEVAIVRPG 638

Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           PI    V  Y  R+ G E +      + P L+ T+GV I+QEQVMQIA + +G++  EAD
Sbjct: 639 PIQGGAVHPYLKRRQGLEPVTYPKDDLKPALERTRGVPIFQEQVMQIAIIAAGFTPGEAD 698

Query: 712 VLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            LRRAM   K K  +++ + + + G  +       A  IFE +  F +YGF +SHAA++A
Sbjct: 699 ALRRAMAAWKRKGNLEQYRRKIVDGMRERDYPPEFAEQIFEQIKGFGEYGFPESHAASFA 758

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            + Y ++W+K H P  F+AA +  +        +  QDA++  + ++P
Sbjct: 759 HLVYASSWLKCHEPAIFVAALLNSQPMGFYPPAQLVQDAKRHGVTVLP 806


>gi|289208277|ref|YP_003460343.1| DNA polymerase III subunit alpha [Thioalkalivibrio sp. K90mix]
 gi|288943908|gb|ADC71607.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. K90mix]
          Length = 1044

 Score =  333 bits (855), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 278/1032 (26%), Positives = 466/1032 (45%), Gaps = 91/1032 (8%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            + P +  L   S++S L GA     ++++  A    A+A+TD  +L   +     A   G
Sbjct: 7    EPPEYAELMAVSNFSFLRGASHPEELVERARALGYRALALTDIASLAGVVRAHAAAKECG 66

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY-LLDQG 125
            +  I+G      + D               P++ LLV  A GY  L  L+++     D+G
Sbjct: 67   LHLILGATFQ--LADG--------------PALTLLVRNAAGYAALCRLITQARGAADKG 110

Query: 126  KQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK-RLLTFKKLFGDRLY 183
               + R  L  L      G  +L      P + A        AE  R L      G    
Sbjct: 111  HYHLTRADLDVLPAEARAGWHVLLRIEPEPAEPAL-------AEAVRWLAGWATPGQAHL 163

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
               Q     D    ++  QLA    LP+VA  +    S       DVL A+   T V++ 
Sbjct: 164  AVSQLRTPEDATLATRARQLAEATRLPIVACGDVHMHSRGRRALQDVLTALRQRTTVAEA 223

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
               R    +  L+ R ++ +++      L  +V IAR C F L       P       D 
Sbjct: 224  APARFPNGERCLRPRDDLATLYPA--PWLAASVRIARDCDFSLDAVTYRYP------TDP 275

Query: 303  IQKEEENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + ++      LR + + G   R   G   K        ++++ EL +IA++ +  YFL V
Sbjct: 276  LPRDTSPAAYLREETLKGARGRWPDGIPPK------VTEQIERELGIIAQLGYEPYFLTV 329

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +++A+   I +  GRGS A S   YAL IT +DP R S+LFERF++ +R   PD D+
Sbjct: 330  YDIVRFARGRGI-LCQGRGSAANSAVCYALGITAVDPSRSSMLFERFISAERGEPPDIDV 388

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI+Y+  +YG ER A   T    + ++ALRDVGRAL +  +++D L   + 
Sbjct: 389  DFEHERREEVIQYIYQRYGRERAALACTVIRYRRRSALRDVGRALGISRARLDALTANL- 447

Query: 481  NDPAHPVSLQAIADDS----RFREARL-ADPSVDRLLE-ISQKLEGLYRHASTHAAGIVI 534
                      A  DD     R RE  L  D ++ R  + ++ +L G  RH S H  G VI
Sbjct: 448  ----------AWWDDGIPAERLREVGLDPDGALARQWQALTAELLGFPRHLSQHTGGFVI 497

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
             +  L +LVP+      +  V Q++   ++  GL+K D L L  L+ ++++L+ +AQ RG
Sbjct: 498  AEGRLDELVPIENAAMPERSVIQWDKDDLDAVGLLKIDVLALGMLSCVRRALELMAQHRG 557

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ +P +D   Y +L    TLGIFQ+ES      L  ++P    D++  +++ RPG
Sbjct: 558  RDWGLADVPAEDPAVYRMLQKADTLGIFQIESRAQMSMLPRLKPANFYDLVIEIAIVRPG 617

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PI   +V  Y  R+   E++   +  +  +L  T GV I+QEQV+++A + +G+S  EAD
Sbjct: 618  PIQGEMVHPYLKRRAHPERVSYPNAEVKRVLGRTLGVPIFQEQVIELAMVAAGFSAGEAD 677

Query: 712  VLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRA+G  +   ++ + +ER + G  + G  +  A  +++ +  F +YGF +SH+A++A
Sbjct: 678  GLRRAIGAWRRTGQLARYRERLMDGMRQRGYPEKFAEQLYKQILGFGEYGFPESHSASFA 737

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK- 829
            +I++ ++W+K H P  F  A +  +        +   DAR+  +++ P  V+  C D+  
Sbjct: 738  LITWVSSWLKCHEPAIFACALLNSQPMGFYAPAQIVADARRHGVEVRP--VDVRCSDWDC 795

Query: 830  -----VGDNRIYYSLA--AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                  G + +   L    + G+    A  ++ A A++PF  + D  +R     L R   
Sbjct: 796  TVEPVAGSDALALRLGLNRVGGLAQAVAERVVAARAERPFADVPDLVARA---ALTRAQA 852

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-TFSDKITLE 941
              L  A AL     +R Q           A+W  +    +   +FA     T  +     
Sbjct: 853  NRLARADALKGLAGNRHQ-----------ARWATEA-VEEPLPLFADAPAETVREADVTP 900

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                 ++      +    G     HPL + +P L +  +      +        R A +V
Sbjct: 901  LLPGPDAVDDLVQDYATQGLSLGPHPLALMRPFLEQRRLPTAARLLERPGHPGARYAGLV 960

Query: 1002 VSKQQKKTRKGS 1013
            +++Q+  +  G+
Sbjct: 961  ITRQRPGSAHGT 972


>gi|167568660|ref|ZP_02361534.1| error-prone DNA polymerase [Burkholderia oklahomensis C6786]
          Length = 844

 Score =  333 bits (855), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 243/828 (29%), Positives = 389/828 (46%), Gaps = 48/828 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S + ++++  A     IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSADELVERAKAHGYRGIAITDECSLAGAPRMHVAANAEGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G   D+   D       G  P P    +VLL    EGY  L EL+S    +D  K +
Sbjct: 69  LVVGAYFDVTPDD----VAPGHDPGPGAFGLVLLARNREGYGNLSELIS-WRRMDAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            R+    L    +    +        I    +   + + + +L  F  LFG+R  + L Q
Sbjct: 124 YRLTPQMLAAPPSTFAHLRGVPDCFAILVPTYPARADMLDAQLAWFDALFGERARLGLVQ 183

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D     ++        + +VA  +    +       D + A+     +++     
Sbjct: 184 LQRALDGAHREEIRAAGERRGMRIVALGDVTMHARSCKPLQDAMTAIRLGMPIAECGY-A 242

Query: 248 VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           + P  + +L+ R  +  +F    EA+  T  I   C F L       PR +  E      
Sbjct: 243 LAPNAEQHLRLRQRIAQLFPA--EAIAETCRILDACDFSLDELRYEYPRELVPE----GH 296

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + LR +  +G   R   G           ++R+ +EL +IA +K+  YFL V D +Q
Sbjct: 297 TPTSYLRRETWSGAHRRYPDGV------PDTVQERIRYELELIAELKYEPYFLTVYDIVQ 350

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+  +I +  GRGS A SV  + L +T++ P + SLLFERF++ +R   PD D+DF   
Sbjct: 351 YARSRDI-LCQGRGSAANSVVCFCLGVTEVHPEKSSLLFERFISRERGEPPDIDVDFEHQ 409

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 410 RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAK-------- 461

Query: 486 PVSLQAIADDSRFREARLAD-------PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                   D SR   AR          P +    E++ +L G  RH S H+ G VI    
Sbjct: 462 ---EHRWFDGSRDLLARFESVGLDPDTPLIRAWAELAARLLGFPRHLSQHSGGFVISRGK 518

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK-- 595
           L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ D + A RG +  
Sbjct: 519 LTRLVPVENAAMEGRRVIQWDKNDLEALGLMKVDVLALGMLSALHRAFDMITAWRGRRDG 578

Query: 596 --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
               +  IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPG
Sbjct: 579 QPFGMQSIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRDYYDLVIEVAIVRPG 638

Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           PI    V  Y  R+ G E +      + P L+ T+GV I+QEQVMQIA + +G++  EAD
Sbjct: 639 PIQGGAVHPYLKRRQGLEPVTYPKDDLKPALERTRGVPIFQEQVMQIAIIAAGFTPGEAD 698

Query: 712 VLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            LRRAM   K K  +++ + + + G  +       A  IFE +  F +YGF +SHAA++A
Sbjct: 699 ALRRAMAAWKRKGNLEQYRRKIVDGMRERDYPPEFAEQIFEQIKGFGEYGFPESHAASFA 758

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            + Y ++W+K H P  F+AA +  +        +  QDA++  + ++P
Sbjct: 759 HLVYASSWLKCHEPAIFVAALLNSQPMGFYPPAQLVQDAKRHGVTVLP 806


>gi|209543499|ref|YP_002275728.1| DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus
            PAl 5]
 gi|209531176|gb|ACI51113.1| DNA polymerase III, alpha subunit [Gluconacetobacter diazotrophicus
            PAl 5]
          Length = 1049

 Score =  333 bits (855), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 286/1027 (27%), Positives = 470/1027 (45%), Gaps = 86/1027 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PS+  LQ  ++YS L GA   + +  +  A    A+ I D + +   ++  + A   G++
Sbjct: 2    PSYAELQAVTNYSFLRGASHPDELFARARALGHAALGIVDHDGVAGIVQSWKAAEKHGVR 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV--SRMYLLDQGK 126
             ++GC+L   ++D               P ++   +    + RL  L+  S+    D   
Sbjct: 62   LVVGCRLV--LRDG--------------PPLLAYPTDRAAWGRLCRLLTASKRKAADGTA 105

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDRLYVN 185
              +R   + L    T+GLI++              +    A  R L + + L GDR Y+ 
Sbjct: 106  PGLR--RADLHR-ATDGLILI-----------LLPDDPDAALARDLDWLRALCGDRGYLA 151

Query: 186  LQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L  R R  D  R  ++ ++A    +  V T + L+         DVL  +     + +  
Sbjct: 152  LTLRRRPGDAVRLHRLAEMARAAGVADVVTGDVLYHEPARAMLQDVLTCIRTGCTIDELG 211

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDD 302
            + R    D +LK+ +EM  +++  P AL  T EIA RC+F     +P   R+   +E DD
Sbjct: 212  QGREAYADRHLKSPAEMAVLYAAHPAALARTREIAARCTF-----SPADLRYQYPEESDD 266

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +  ++ L   A A L  R   GA          R+++++EL +I  + ++ YFL V  
Sbjct: 267  PSETPQDRLERLARAALRDRYPAGA------PDPVRRQVEYELGLIRDLHYAPYFLTVHT 320

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             ++ A+   I +  GRGS A S   + L IT+IDP   +LLFERF++ +R   PD D+DF
Sbjct: 321  IVRQARSQGI-LCQGRGSAANSAVCFVLGITEIDPASSNLLFERFVSAERQEPPDIDVDF 379

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+EVI+++  +YG +R A   T    +A+ ALRDVG+ L +P      L   +   
Sbjct: 380  ESERREEVIQWIYRRYGRDRAALCATTMRYRARGALRDVGKVLGLPADVTGLLSTHL--- 436

Query: 483  PAHPVSLQAIADDSRFRE--ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                +S    A   R RE    L +  +   L+++ +L G  R   TH  G V+    L 
Sbjct: 437  --GALSFDEDAFHERARELGLNLRNRRLLLTLQLAGELIGFPRQLGTHPGGFVLTRDRLD 494

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599
             LVP+      D  +  ++   I+    +K D LGL  L  ++++ D L    G ++ LS
Sbjct: 495  DLVPIQPAAMDDRQIIVWDKDDIDTLRFMKVDVLGLGMLGCMRRAFDMLEDHYGKRLTLS 554

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DN 657
             IP  D +TY +++   T+G FQ+ES      L  M+P    D++  V++ RPGPI  D 
Sbjct: 555  GIPPGDADTYAMISRADTIGTFQIESRAQMAMLPRMKPREFYDLVIQVAIVRPGPIQGDM 614

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +  Y  R+  +  +    P +  +L +T GV ++QEQ MQIA   +G++  EAD LRRAM
Sbjct: 615  VHPYLQRRADRSLVDYPSPELRDILHKTLGVPLFQEQAMQIAIRCAGFTPGEADALRRAM 674

Query: 718  GK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            G  +    +   ++R I G       +  A  IF  L  F  YGF +SHAA++A+I+Y +
Sbjct: 675  GTFRGHGTVTYFRDRLIDGMMARHYPRDFAERIFRQLEGFGSYGFPESHAASFALIAYAS 734

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----- 831
            +WMK HYP  F AA +  +     +  +  +DAR   + + P  VN    D  +      
Sbjct: 735  SWMKCHYPDVFCAALLNSQPMGFYRPAQIVRDARNHGVTVHPVCVNASRWDCTLERAPGR 794

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               +   L  +KG+  T A  ++ AS   P+D +ED   R     L    LE L  A A 
Sbjct: 795  STAVRLGLRMVKGLSNTDAARLV-ASRMPPYDGIEDVWRR---SGLGPDALECLAQADAF 850

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSVENSSV 950
               G  R           + A W  K        +F A ++G         + SV  +++
Sbjct: 851  HALGRDR-----------RAALWDIKGLAESPLPLFAAADRGLNRPLPECVEPSVPLTAM 899

Query: 951  RFENEQRVLGFYFSG-----HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
              E ++ V  ++ +G     HP+   +  LR  G+    +  A   G  + +  +V+ +Q
Sbjct: 900  -TEGQEVVEDYHATGLTLRRHPVAFLRDGLRDRGMIACADLRALRDGRRVVVPGLVLMRQ 958

Query: 1006 QKKTRKG 1012
            +  T +G
Sbjct: 959  RPGTAQG 965


>gi|42521998|ref|NP_967378.1| DNA polymerase III, alpha chain [Bdellovibrio bacteriovorus HD100]
 gi|71151813|sp|Q6MQS6|DNAE2_BDEBA RecName: Full=Error-prone DNA polymerase
 gi|39574529|emb|CAE78371.1| DNA polymerase III, alpha chain [Bdellovibrio bacteriovorus HD100]
          Length = 1061

 Score =  333 bits (854), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 272/1040 (26%), Positives = 477/1040 (45%), Gaps = 92/1040 (8%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            ++  FV L   S++S L+GA S   ++ +        +A+ D N L+  +   Q   +  
Sbjct: 21   RAKGFVELLGRSNFSFLQGASSPEEMVSQAVEFGYDGMALCDLNGLYGVVRGFQTIQSPS 80

Query: 67   I---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            +    P +       +   L +T++         S+VL+    +GY  L E+      L 
Sbjct: 81   LFTASPQVKENFHYLIGSELTLTDES--------SVVLIPMNKQGYSHLCEI------LT 126

Query: 124  QGKQSVRICLSWLQ----EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             GK+      S L     E   +GL+ L                    ++R    +K+F 
Sbjct: 127  LGKRQAAKGFSKLSLEQIEKYNQGLLCLA--------------LPPWTDERYEKLEKIFD 172

Query: 180  DRLYVNLQRHRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +RLY+ L R   ++      Q   L   ++  L  T      S E     DVL    H T
Sbjct: 173  NRLYLPLWRDLTWESQEFCRQGFALEEKYKAQLFVTQRPFMHSPERKPLFDVLTCTLHHT 232

Query: 239  VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             +++ K++     +  LK+  ++  ++ D  + +E TVEI+ R +F L     I  R+  
Sbjct: 233  TLAEAKNKLIQNSERCLKSLEDISWLWQDRLDLVEKTVEISARVTFSLN---EIRYRYPA 289

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                      E  +R+  + G E R  +G   K        ++++ EL +I  +++  YF
Sbjct: 290  SSLPSGMTPTEY-MRHLTLKGAESRYPEGIPDKAL------KQIEHELELIKDLQYEDYF 342

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L + +   +A +  I +  GRGS A SV  + L +T IDP++  LLFERFL+ +R   PD
Sbjct: 343  LTLKEICDFASERKI-LYQGRGSAANSVVCFCLGLTAIDPVKMDLLFERFLSRERREPPD 401

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             DIDF   RR+EVI+++  KY     A + T    +++ A+R+  +   MP ++++ + K
Sbjct: 402  IDIDFEHSRREEVIQHIYEKYNERHAAMVCTVIRYRSRMAIRETAKVFGMPLAKINAMIK 461

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRL-LEISQKLEGLYRHASTHAAGIVIGD 536
             +  D    +   A+A D         +P   ++ + ++Q+L G  RH   H  G +I  
Sbjct: 462  FMGRDGMKRLLDPAVAADFGM------EPGPWKMFMALAQQLHGFPRHLGIHTGGFLITQ 515

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595
             P++++VP+ +   +   V Q+N   ++   L+K D L L  LT L+K  D L   +G  
Sbjct: 516  DPITEMVPVEKATMNGRYVIQWNKDDVDFLRLMKIDVLSLGMLTCLRKCFDLLRDVKGRD 575

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  TY ++    T+G+FQ+ES      L  MQP    D++  ++L RPGP+
Sbjct: 576  YSLATLPADDKPTYDMICRAETVGVFQIESRAQMNTLPRMQPRNFYDLVIEIALIRPGPL 635

Query: 656  DNIVVY---NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
               +V+     R+N  ++I   HP ++P+LK+T G+ I+QEQVM++   ++ ++  EAD 
Sbjct: 636  QGGMVHPFLKLRQNPPKEIKYAHPALEPILKKTMGIPIFQEQVMKMVVAVADFTPGEADE 695

Query: 713  LRRAMGK--KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            LRR M    K K  M   ++R  +G +++GIS   A  IF+ +  FA+YGF +SH+A++A
Sbjct: 696  LRRVMSSAWKRKATMGGIEQRLRTGFARHGISSEYADQIFKTIEGFANYGFPESHSASFA 755

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +++Y + ++K HYP  F    +  +       +    +A++  + + P  V     D+ +
Sbjct: 756  LLTYASCYLKCHYPDVFACGLLNSQPMGFYAPRTIIAEAQRNGVVVAPLDVQKSDYDYTI 815

Query: 831  ----GDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
                  + +   L +I G+     R I ++  ++  +  L DF  R    +L R VL  L
Sbjct: 816  EKTAAGDLLRVGLRSIYGIPEVLIRRIEDSRKEEGLYIDLADFIRRT---QLPRSVLLKL 872

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF---SDKITLEK 942
              AGA + F  +  +L+ +L+++            ++   ++ H K  F    D    E 
Sbjct: 873  AAAGAFESFNSNVRELIWNLESLS----------LDQQSFLWGHPKEQFELGEDDDEPEH 922

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPI-------LRKMGIKGYEESVATIR---G 992
               E++  R   E    G+    HP+ V +         LR+     Y  S    R    
Sbjct: 923  LPFESNWDRLRREYDSKGYSVESHPMSVLRTYLHSKSEALREKRFVPYFSSEDLKRMKTK 982

Query: 993  NNIRLAAMVVSKQQKKTRKG 1012
              +R+A +V   Q+  T KG
Sbjct: 983  TKVRVAGLVAITQRPPTAKG 1002


>gi|89900021|ref|YP_522492.1| DNA polymerase III subunit alpha [Rhodoferax ferrireducens T118]
 gi|89344758|gb|ABD68961.1| DNA polymerase III, alpha subunit [Rhodoferax ferrireducens T118]
          Length = 1084

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 252/851 (29%), Positives = 403/851 (47%), Gaps = 63/851 (7%)

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPD 251
            D  +  ++ QLA    +PLVA  N            DVL AV     V    R  +   +
Sbjct: 189  DTLQGQRLQQLARLTGVPLVAAGNVHMHVRSRKPLQDVLSAVRLGQPVFDCGRALQPNAE 248

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +L++R  + +I+S  P+ L NT+ +A RC+F L       P  +E   + +   +   L
Sbjct: 249  AHLRSRQRLAAIYS--PDVLANTLTVAARCTFSLDELRYQYP--LETVLEGLSAAQT--L 302

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R  A  G   R  QG  A        +Q+LD EL +I  + F  YFL V D +++A+  +
Sbjct: 303  RRYAAEGALNRYPQGTPA------SVQQQLDHELALITELHFEMYFLTVHDIVRFARSRH 356

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I +  GRGS A S   Y L +T++DP R ++LFERF++ +R   PD D+DF   RR+EVI
Sbjct: 357  I-LCQGRGSAANSAVCYCLGVTEVDPSRMNMLFERFISRERNEPPDIDVDFEHQRREEVI 415

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +Y+  KYG ER A      S + ++ALRDVGRAL +P + +  L K  P   +  V ++ 
Sbjct: 416  QYIYAKYGRERAALSAVVISYRPRSALRDVGRALAVPEALISALAKEHPGMYSRTVLVER 475

Query: 492  IADDSRFREARLADPS--VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +        A +A P+  +   L++S +L+   RH S H  G V+    L++LVP+    
Sbjct: 476  LQSALALLAADVAPPAECLQLWLDLSTQLQRFPRHLSQHPGGFVLTRGKLTRLVPVENAA 535

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHET 608
              +  + Q++   ++  GL+K D L L  L+ +++ LD ++ QRG    +  IP +D  T
Sbjct: 536  MPERSIIQWDKDDLDAMGLLKVDVLALGMLSAIRRCLDLISVQRGTPFSMQDIPPEDLAT 595

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKN 666
            Y ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI   +V  Y   + 
Sbjct: 596  YDMICQADTVGVFQIESRAQMSMLPRLKPRCFYDLVVEVAIVRPGPIQGGMVHPYLKARE 655

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEM 725
              E++    P +  +LK T GV I+QEQVMQIA   + +S  E+D LRR+M   K +  +
Sbjct: 656  HPEQVPYPSPALQEVLKRTLGVPIFQEQVMQIAMAAADFSAGESDSLRRSMAAWKRQGGV 715

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             K  +R + G  KNG S   A  IF+ +  F +YGF +SHAA++A++ Y ++W+K H P 
Sbjct: 716  HKFYDRLVGGMLKNGYSLEFAEQIFKQIEGFGEYGFPESHAASFALLVYVSSWLKRHQPA 775

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----------- 834
             FLAA +  +        +  QDA++  + + P  V     D  +   +           
Sbjct: 776  CFLAALLNSQPLGFYSPSQLVQDAQRHGVGVRPVDVTRSDWDCTLEPAKSTKLLGSDPNS 835

Query: 835  -------------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                         +   L  + G+  + A+ I+ A  + PF S ED   R   +  + + 
Sbjct: 836  GAAQLPDVCRSPFVRLGLRQVSGLSESAAQRIVAARVEAPFTSTEDLALRCALEAGDLKA 895

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            L S     +L   G+ R Q+            W    + N    + A      + ++   
Sbjct: 896  LASADALASLS--GHRRQQV------------WDAAAQQNAPGLLRAVPVAEAALQL--- 938

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
              + E   V F+     LG     HPL + +  L KM +    +      G   R   +V
Sbjct: 939  PAASEGEEVIFDYA--ALGLTLRSHPLLLLREQLSKMRLMTAAQLRDLPNGRLARACGIV 996

Query: 1002 VSKQQKKTRKG 1012
              +QQ +T KG
Sbjct: 997  TMRQQPQTAKG 1007


>gi|171317636|ref|ZP_02906822.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MEX-5]
 gi|171097213|gb|EDT42062.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MEX-5]
          Length = 1071

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 294/1044 (28%), Positives = 466/1044 (44%), Gaps = 94/1044 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASHAEELVERAAELGYRGIAITDECSLAGAPRMHVAAKAQGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G   D+   D       G  P P    +VLL    EGY  L EL+S   +    K +
Sbjct: 69   LIVGSFFDVTPDD----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISWRRMASP-KGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             ++    L     E   +        I    +   + V + ++  F+  FG R  + L Q
Sbjct: 124  YKLTSRMLSAPPAEFAHLRGMPDCFAILVPTYPVRADVLDAQVAWFRATFGARARLGLVQ 183

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D  +  ++        + +VA  +            DV+ A+     VS+     
Sbjct: 184  LQRPLDGAQREEIRAAGERRGVRIVALGDVTMHRRSCKPLQDVMTAIRVGMPVSECGYA- 242

Query: 248  VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSF---ILQVHAP--ILPRFIEKEC 300
            + P  + +L+ R  +  +FS  PE L+ T  I   C F    LQ   P  I+P+ +    
Sbjct: 243  LAPNAEQHLRARGRIAKLFS--PEELDETCAILDACDFKLDTLQYEYPDEIVPKGLTPT- 299

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                      L  +  AG   R  QG   K         ++  EL++IAR+ +  +FL V
Sbjct: 300  --------RHLEQETFAGAAARYPQGIPEK------VETQIRHELDLIARLSYEPFFLTV 345

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +++A+  NI +  GRGS A SV  Y L IT+++P + ++LFERF++ +R   PD D+
Sbjct: 346  YDIVKYARSQNI-LCQGRGSAANSVVCYCLGITEVNPEQSTMLFERFISEERGEPPDIDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR+EVI+++  KYGH+R A      + + +  LR+ G+AL +    VDR+ K   
Sbjct: 405  DFEHQRREEVIQHIYAKYGHDRAALAAAVSTYRPRGVLRETGKALGVDPMLVDRVAK--- 461

Query: 481  NDPAHPVSLQAIADDSR-----FREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
               AH        D SR     F    L  A P +    E++ +L    RH S H+ G V
Sbjct: 462  ---AH-----RWFDGSRDLLQQFASTGLDPATPIIRAWAELAGRLLNFPRHLSQHSGGFV 513

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQR 592
            I    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ D   A R
Sbjct: 514  ISRGKLTRLVPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWR 573

Query: 593  GVKVD-----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            G + D     L  IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  V
Sbjct: 574  GPQEDGEPFTLKHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLKPRNYYDLVVEV 633

Query: 648  SLYRPGPIDNIVV--YNNR---KNGKEKIVSIHP--LIDPMLKETQGVIIYQEQVMQIAQ 700
            S+ RPGPI    V  Y  R   K G+E+    +P   +  +L+ T GV I+QEQVMQIA 
Sbjct: 634  SIVRPGPIQGGAVHPYLKRRRIKAGEEEGEITYPSDALRVVLERTLGVPIFQEQVMQIAI 693

Query: 701  LLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            + +G++  EAD LRRAM   K + ++    ++ ++G  + G ++  A  IFE +  F +Y
Sbjct: 694  VAAGFTPGEADQLRRAMAAWKRRGDLGPYHDKIVNGMLERGYTREFAEQIFEQIKGFGEY 753

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++  +Q++P 
Sbjct: 754  GFPESHAASFAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHGVQVLPI 813

Query: 820  SVNTPCVDFKV----------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
             V     +  +          G   +   L+ ++G+G   AR I  A A  PFD+++   
Sbjct: 814  DVTQSNWEASLEALPDQPPPHGQPAVRLGLSLVRGLGEAAARRIEAARAAAPFDNVDVLA 873

Query: 870  SRVDSKKLNRR-VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             R    +L RR +             G+ R  L Q++                   ++ A
Sbjct: 874  RRA---QLERRDLEALAAANALATLAGHRRDALWQAVA-------------AAPERDLLA 917

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
                   DK  L   S  +  +    +    G   + HP+ + +P LR   +    E   
Sbjct: 918  AAPIDEPDKPALGAPSEADDIL---ADYDTTGLTLNRHPVALLRPALRAQRLSSAAELRD 974

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKG 1012
               G   R   +V ++Q   T KG
Sbjct: 975  RSDGRLARACGIVTARQMPGTAKG 998


>gi|213582269|ref|ZP_03364095.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. E98-0664]
          Length = 562

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 186/441 (42%), Positives = 262/441 (59%), Gaps = 27/441 (6%)

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGK 668
            +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+
Sbjct: 1    MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 60

Query: 669  EK-----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            E+     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  E
Sbjct: 61   EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 120

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HY
Sbjct: 121  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 180

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAI 842
            P EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AI
Sbjct: 181  PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAI 240

Query: 843  KGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L
Sbjct: 241  KGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 300

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRF 952
            + SL +  K A    K       ++F    G  ++    E   +E S          V  
Sbjct: 301  MNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVL 352

Query: 953  ENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
            + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A +V++ +   T++
Sbjct: 353  DGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKR 412

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G+RIG  T  + +   E   F
Sbjct: 413  GNRIGICTLDDRSGRLEVMLF 433


>gi|256788653|ref|ZP_05527084.1| DNA polymerase III, alpha chain [Streptomyces lividans TK24]
 gi|289772548|ref|ZP_06531926.1| DNA polymerase subunit III [Streptomyces lividans TK24]
 gi|289702747|gb|EFD70176.1| DNA polymerase subunit III [Streptomyces lividans TK24]
          Length = 1185

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 291/1093 (26%), Positives = 481/1093 (44%), Gaps = 118/1093 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-AGI 67
            P F HL   S +S   GA     + ++       A+A+TD + L  A+ F+ KACA AG+
Sbjct: 2    PGFTHLHTVSGFSARYGASHPERLAERAFERGMDALALTDRDTLAGAVRFA-KACAKAGV 60

Query: 68   QPIIGCQL--------DIDMQDNLKMTNQGKTPF-------PTVPSIVLLV-STAEGYQR 111
            +P+ G +L          D  +     ++ + P         + P +  L    A G+  
Sbjct: 61   RPLFGAELAVAAPESAAADRTETSVRRDRRRAPVRGGAFVDESAPRVTFLARDGARGWAD 120

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L  LVS  +  +         LSW  +   +GL +L G  S  + RA        A + L
Sbjct: 121  LCRLVSAAHTAEGSP-----LLSW-PDNHADGLTVLLGPDS-DVGRALAAGRPDRAARLL 173

Query: 172  LTFKKLFGDRLYVNLQRHR----GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            + +++++GD L +    H     G    R  ++ V  A    +  V +N   +      E
Sbjct: 174  VPWREVYGDALRLEAVWHGRTGIGPGSLRLAARTVGFAAEQGVRPVLSNAVRYADPGQGE 233

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
              DVL A A   V     +   + + +LK+   M      + E+     + A R   + Q
Sbjct: 234  VADVLDA-ARRLVPIDATKELDSGEAWLKDAGAMRHAAERIVESAGFRRDTAHR--LLEQ 290

Query: 287  VHAPILPRFIEKECDDI--------QKEEENELRNKAVAGLEVRLAQGAIAKGY----HA 334
              A      ++ E DD+        +       R  A   L  R A G + +GY      
Sbjct: 291  TRATAAECLVDPE-DDLGMGAVHFPEPHLVGAGRRTAQRALASRAAAGMVRRGYDRRRDH 349

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
            ++Y +R+  EL++IA   F+ YFL VA  +   +   I V   RGSGAGS+  + L I  
Sbjct: 350  REYWERMHHELDIIAHHGFASYFLTVAQVVDDVRHMGIRVA-ARGSGAGSLVNHLLGIAH 408

Query: 395  IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
             DP+   LL ERFL+ +R+ +PD DID    RR EV R +  ++G ERVA +    + + 
Sbjct: 409  ADPVEHGLLMERFLSKERVVLPDIDIDVESARRLEVYRAIIGRFGTERVATVAMPETYRV 468

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA---------- 504
            + A+RDVG AL M  +++DR+ K  P+               R R+AR A          
Sbjct: 469  RHAIRDVGAALSMDPAEIDRVAKSFPH--------------IRARDARAALEELPELKEL 514

Query: 505  --------DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
                         RL E+ + L+ L R  + H  G+++ D  L    P+       LP+ 
Sbjct: 515  AGESRRDGGGRYGRLWELVEGLDALPRGVAMHPCGVLLSDASLLSRTPVVPTSGEGLPMA 574

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTK 615
            QF+   +E  GL+K D LG++  + +  ++  + +  G ++DL  +P  D  TY ++ + 
Sbjct: 575  QFDKDDVEDLGLLKLDVLGVRMQSAMAHAVAEVKRATGTEIDLDAVPEGDPATYRMIRSA 634

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVS 673
             TLG FQ+ES G R  +  +QP    D++  +SL+RPGP+  D +  +   ++G+  +  
Sbjct: 635  ETLGCFQIESPGQRDLVGRLQPATFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRH 694

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
             H  +   L  T GV+++ EQ++ I  +++G    EAD +RR +     E   + K  F 
Sbjct: 695  PHEDLAEPLAGTYGVVVFHEQIIDIVAIMTGCGRGEADRVRRGLSD--PESQGRIKVWFA 752

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
              A+ NG         +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T
Sbjct: 753  QHATANGYDAETIQRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLT 812

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDNR-----IYYSLAAI 842
             +     K +    DAR+  + I+P  VN   V  ++      G  +     +  +L+ +
Sbjct: 813  HDPGMYPK-RLLLADARRRGVPILPLDVNESGVAHRIELVSESGSRKPATWGLRLALSDV 871

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             G+    A  I   +  +P+ SL DF  R    + +R +   L   GALD FG +R  L 
Sbjct: 872  HGISEAEAERI---ATGQPYASLLDFWERA---RPSRPLAGRLAQVGALDAFGANRRDLQ 925

Query: 903  QSLDNIQKYAQWVEKNR---TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
              L  + + A+    ++   T   +   A       D  + EK S E           VL
Sbjct: 926  LHLTELHRGARGGRGDQLPLTGGRKTASA----GLPDLTSEEKLSAELG---------VL 972

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
                S + +D ++  LR++G+   +       G  + +A    + Q    R G R+ + T
Sbjct: 973  SMDASRNLMDDHRTFLRELGVVSAKRLREARHGETVLVAGAKAATQTPPVRSGRRVIFST 1032

Query: 1020 FSEPAKEYEANFF 1032
              + +   +  FF
Sbjct: 1033 LDDGSGLVDLAFF 1045


>gi|83952727|ref|ZP_00961457.1| DNA polymerase III, alpha subunit, putative [Roseovarius nubinhibens
            ISM]
 gi|83835862|gb|EAP75161.1| DNA polymerase III, alpha subunit, putative [Roseovarius nubinhibens
            ISM]
          Length = 1107

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 297/1041 (28%), Positives = 457/1041 (43%), Gaps = 90/1041 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSALEFSQKACA 64
            +  L V ++++ L GA     ++ + A     AIAITD N+L      + AL+  +   A
Sbjct: 4    YAELGVTTNFTFLTGASHPEEMVARAAELGLEAIAITDRNSLAGVVRAYKALKLLRDK-A 62

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE----------------- 107
              + PI      ID     ++  Q   P P  P +  L++ A                  
Sbjct: 63   QEVLPI-RSHRRIDSSSRQEVGWQRPLPRPETPQLPRLITGARLVLRDGRGVDWLALPTD 121

Query: 108  --GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
               YQRL  L      L  GK+        L       L  L  G +G I  A   +  +
Sbjct: 122  LAAYQRLTRL------LTLGKRRAEKGQCHLD------LADLLAGCAGMILIALPEDLRR 169

Query: 166  VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
             A +     ++  G        R+ G D+        LA     P+VA  + L       
Sbjct: 170  AAPEIQQMRRRYPGHVFLGAAPRYDGSDQAYFDACAALALRCAAPMVAVGDVLMHRAARR 229

Query: 226  EAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
            +  DVL  +     +     R     +  LK   +M  +F + P AL  TVEIA RCSF 
Sbjct: 230  QLADVLTCLREGCTIDHIGTRALPNAERRLKGAEDMARLFRNHPAALRRTVEIAGRCSFC 289

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            L   +   P     E     +     LR  A  GL  R  +GA AK       R  LD E
Sbjct: 290  LSELSYQYP-----EEGSQHEPPMARLRRLAEEGLARRYPKGATAKA------RALLDKE 338

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L V+  +KF  YFL V D +Q+A+   I +  GRGS A S+  Y L ITD+ P    ++F
Sbjct: 339  LAVVEELKFPAYFLTVHDIVQFARSRGI-LCQGRGSAANSILCYLLGITDVSPEMIGMVF 397

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERF++  R   PD D+DF  +RR+EVI+++   YG ER     T    + +AA+R+VG+ 
Sbjct: 398  ERFISRHRGEPPDIDVDFEHERREEVIQWIYATYGRERAGLCATVIHFRTRAAIREVGKV 457

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGL 521
            + +      RL   I           + AD  R RE  L DP+  RL   + +  ++ G 
Sbjct: 458  MGLSQDLTTRLSADIWG------LTNSGADMERARELGL-DPADRRLAQTMRLIGEIIGF 510

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             RH S H  G VI    L +L P+      D  + +++   I+  G++K D LGL  L+ 
Sbjct: 511  PRHLSQHVGGFVITKGRLDELAPIENAAMEDRTLIEWDKDDIDTLGILKVDVLGLGMLSC 570

Query: 582  LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++KS D LAQ  G  + L+ +P +D  TY +L     +G+FQ+ES      L  M+P   
Sbjct: 571  VRKSFDLLAQHEGQNLSLATVPQEDRHTYEMLQRADAVGVFQVESRAQMNFLPRMKPREF 630

Query: 641  EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
             D++  V++ RPGPI   +V  Y  R+ G E      P ++ + + T GV ++QEQ MQI
Sbjct: 631  YDLVIEVAIVRPGPIQGGMVQPYIRRRQGLEAPEPFGPALEEVTRRTLGVPLFQEQAMQI 690

Query: 699  AQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            A   +GY+  EAD LRR++   +    + + ++RF++G   NG ++ +A   F  +  FA
Sbjct: 691  AMTGAGYTAEEADHLRRSLASFRRMGTIGEHRDRFLTGMMANGYAREVAERCFGQIEGFA 750

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            DYGF +SHAAA+A++ Y +AW+K H+P  F  A +  +        +  +DAR   ++  
Sbjct: 751  DYGFPESHAAAFALLVYVSAWLKCHHPAIFACALLNSQPMGFYAPAQIVRDARDHGVETR 810

Query: 818  PPSVNTPCVDFKV---GDNRIYYSLA--AIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            P  +N    D  +   GD  +   L    IKG+    AR I+ A  +   D  E    R 
Sbjct: 811  PVCLNHSEWDNTLERRGDGALALRLGFRQIKGLREEDARWIVAARGNGYRDP-ESVWLRA 869

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
                    VLE L  A      G +R   L ++  I+        N     E I  HE  
Sbjct: 870  GVAPA---VLERLAEADGFADMGLTRRDALWAVRAIRGQKPLPLFNDPIDGEAI--HEPA 924

Query: 933  TFSDKITLEKFSVEN-SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                 + L +  VE+  S+R              HP+++ +P +  +      +++ T  
Sbjct: 925  VTLPPMHLGEEVVEDYVSMRLT---------LRAHPMELLRPSMPGL---TRHDALLTAP 972

Query: 992  GNNIRLAAMVVSKQQKKTRKG 1012
                 +  +V+++Q+  T  G
Sbjct: 973  LERRSICGLVITRQRPGTASG 993


>gi|167585392|ref|ZP_02377780.1| error-prone DNA polymerase [Burkholderia ubonensis Bu]
          Length = 1067

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 282/1035 (27%), Positives = 454/1035 (43%), Gaps = 80/1035 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +V L   S++S L GA     ++++        IAITD  +L  A      A A G+ 
Sbjct: 9    PDYVELFCRSNFSFLHGASHAEELVERAVELGYRGIAITDECSLAGAPRMHVAAKAKGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G   ++   D     + G  P P    +VLL    EGY  L EL+S   +    K +
Sbjct: 69   LIVGAYFEVTPDD----VSPGHDPGPGAFGLVLLAQNREGYGNLSELISWRRMASP-KGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             R+    L     E   +        I    +   + V + ++  F+  FG+R  + L Q
Sbjct: 124  YRLTARMLSRPPEEFAHLRGMPDCFAILVPAYPVRADVLDAQVAWFRATFGERARLGLVQ 183

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D  +  ++       E+ +VA  +            D + A+     VS+     
Sbjct: 184  LQRALDGAQREEIRMAGARREVRVVALGDVTMHRRSCKRLQDTMTAIRLGMPVSECGYA- 242

Query: 248  VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            + P  + +L+ R ++  +FS  P+ +  T  I   C F L       P  I  +      
Sbjct: 243  LAPNAEQHLRWRRQIAQLFS--PDEIAQTCAILDACHFELDSLRYEYPDEIVPKGHTPTS 300

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E E R    AG   R  QG   K        +++  EL++IAR+ +  +FL V D ++
Sbjct: 301  YLEQETR----AGAAERYPQGVPEK------VEKQIRHELDLIARLSYEPFFLTVYDIVK 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  NI +  GRGS A SV  Y L IT+++P + ++LFERF++ +R   PD D+DF   
Sbjct: 351  YARSQNI-LCQGRGSAANSVVCYCLGITEVNPEQSTMLFERFISAERGEPPDIDVDFEHQ 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+++  KYG +R A      + + +  LR+ G+AL +    +DR+ K       H
Sbjct: 410  RREEVIQHIYRKYGKDRAALAAAVSTYRPRGVLRETGKALGVDPMLIDRVAK------GH 463

Query: 486  PVSLQAIADDSRFREARLA-------DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                    D SR    + A        P +    +++ +L    RH S H+ G VI    
Sbjct: 464  -----RWFDGSRDLLQQFAAVGLDPDTPLIRAWADLAARLLNFPRHLSQHSGGFVISRGK 518

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGV--- 594
            L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ D   A RG    
Sbjct: 519  LTRLVPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPPEP 578

Query: 595  ---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                  L  IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ R
Sbjct: 579  DGKPFTLKHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRTYYDLVIEVAIVR 638

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGPI    V  Y  R+ G EK+      + P L+ TQGV I+QEQVMQ+A + +G++  E
Sbjct: 639  PGPIQGGAVHPYLKRRQGLEKVSYPKEDLKPALERTQGVPIFQEQVMQVAMIAAGFTPGE 698

Query: 710  ADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD LRRAM   K K  ++K   + + G  +       A  IFE +  F DYGF +SHAA+
Sbjct: 699  ADELRRAMAAWKRKGNLEKYHRKIVDGMRERDYPPEFAEQIFEQIKGFGDYGFPESHAAS 758

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT----- 823
            +A ++Y ++W+K H P  FLAA +  +        +  QDA++  +Q++P          
Sbjct: 759  FAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHGVQVLPIDATKSGWEA 818

Query: 824  -----PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                 P      G   +   L+ ++G+G   AR I  A A  PF++++    R    +L 
Sbjct: 819  SLEALPGQPRPHGQPAVRLGLSLVRGLGEAAARRIEAARAAGPFENVDALARRA---QLE 875

Query: 879  RR-VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            RR +             G+ R  L Q++                   ++ A       D+
Sbjct: 876  RRDLEALAAANALATLAGHRRDALWQAVA-------------AAPERDLLA---AAPIDE 919

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
              +      + +     +    G   + HP+ + +P LR+  +    E      G   R 
Sbjct: 920  PEMPALGAPSEADDVLADYHTTGLTLNRHPVALLRPALRERRLLSAAELRDRPDGRLARA 979

Query: 998  AAMVVSKQQKKTRKG 1012
              +V ++Q   T KG
Sbjct: 980  CGLVTARQMPGTAKG 994


>gi|255532292|ref|YP_003092664.1| DNA polymerase III subunit alpha [Pedobacter heparinus DSM 2366]
 gi|255345276|gb|ACU04602.1| DNA polymerase III, alpha subunit [Pedobacter heparinus DSM 2366]
          Length = 1045

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 242/826 (29%), Positives = 394/826 (47%), Gaps = 57/826 (6%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +  LQV S++S L GA   + ++++ AA     IAITD N L   +     A   G+  
Sbjct: 2   GYTELQVTSNFSFLRGASHPDEMVEQAAAYGYSKIAITDRNTLAGIVRAHVAAKKIGMSI 61

Query: 70  IIGCQLD-IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
           I  C+ D ID                  PS++   +  + Y RL  L++   L  ++G  
Sbjct: 62  IPACRFDLIDG-----------------PSLLAYPTDRDAYSRLSGLLTTGNLRAEKGSC 104

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            +     +    G + +++       P      F+  +  +K L  +++  G  +Y+   
Sbjct: 105 HLYKKDVYEHAKGIKFIVV------PPASLNTRFDFEESFKKALAEYREALGSDVYLGAM 158

Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
           R + G D  +  ++ QLA   ++P+VATN+  +   +  E  D+L  V     +      
Sbjct: 159 RLYNGDDMKQLYRLSQLAKLLDMPMVATNDVHYHEPKRRELQDILTCVREKCTIQHAGFL 218

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                + YLK   EM  +F   P+A+  T EIA  C F L     + P  I  +    Q 
Sbjct: 219 LHQHAERYLKPMEEMQRLFRQYPDAITRTQEIAEACQFSLDSLKYVYPEEITSD-GRTQM 277

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVADF 363
           EE           L     QGA  K  HA  +     +  EL  + +   + YFL V DF
Sbjct: 278 EE-----------LTFLAWQGANEKFNHAIPEKVEATIKAELAFMEKRNLAAYFLTVHDF 326

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           +++A+   I +  GRGS A SV  Y L IT +DP +F LLF RF++  R   PD D+DF 
Sbjct: 327 VRFARSQRI-LCQGRGSAANSVVCYCLGITSVDPSKFRLLFARFMSEARDEPPDIDVDFE 385

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            +RR+EVI+Y+  KYG ER A + T   L  K A+RDV +A+ +    V+RL   +    
Sbjct: 386 HERREEVIQYIYQKYGRERAAIVATVTQLHFKGAVRDVAKAMGLSVDMVNRLSASVWRH- 444

Query: 484 AHPVSLQAIADDSRFREARLADPS---VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                   + DD +  E    DPS   + + LE++ ++ G  R    H  G VI    LS
Sbjct: 445 ------TEVLDDQQLIEQGF-DPSDRHLRKTLELTCQMIGFPRQLGQHTGGFVITQGKLS 497

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599
            L P+      D    ++N   I+  G +K D L L  LT ++K+ D + A  G+ + L+
Sbjct: 498 DLCPVMNARMEDRTCIEWNKDDIDALGFLKVDVLALGMLTCIRKAFDLVKAHYGLDLTLA 557

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DN 657
            +P DD   Y +++   T+G+FQ+ES      L  ++P C  D++  V++ RPGPI  D 
Sbjct: 558 NVPQDDPAVYEMISHADTIGVFQIESRAQMSMLPRLKPKCFYDLVIEVAIVRPGPIQGDM 617

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           +  Y  R+NG+E +      ++ +L  T GV ++QEQ M+IA +  G++ +EAD LRR+M
Sbjct: 618 VHPYLRRRNGEEPVEYPSKELEEILDRTLGVPLFQEQAMEIAIMAGGFTPAEADELRRSM 677

Query: 718 GK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
              K   ++   +++ + G    G  +  +  IF+ L  F  YGF +SHAA++A++ Y +
Sbjct: 678 ASFKANGKLHLYEKKLVDGMVARGYEEGFSRRIFKQLQGFEGYGFPESHAASFALLVYVS 737

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           +W+K +YP  F  A +        +  +   DA++  +++ P  +N
Sbjct: 738 SWLKCYYPDVFATALLNSLPMGFYQPAQLVIDAQKHGVEVKPVDIN 783


>gi|325971353|ref|YP_004247544.1| DNA polymerase III subunit alpha [Spirochaeta sp. Buddy]
 gi|324026591|gb|ADY13350.1| DNA polymerase III, alpha subunit [Spirochaeta sp. Buddy]
          Length = 970

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 290/1035 (28%), Positives = 481/1035 (46%), Gaps = 125/1035 (12%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L + +SYSLL G +  N + D++       +AITD ++L       ++A    I+ I   
Sbjct: 5    LALTTSYSLLWGTMQPNRLFDQLKQWNVGKVAITDRDSLCGYPACREEAQRCNIELICAA 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ--SVRI 131
             L            QG        ++   V + +GY++L        LL Q  Q  S   
Sbjct: 65   CL-----------TQGSD------TLYAFVQSQKGYEKLC------LLLTQRAQDPSFSY 101

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L+E  ++GL++ T  +S  +  AF       A+K LL +  +    L         
Sbjct: 102  LPSLLRE--SDGLVLAT--TSAVLLHAF-------AQKNLLVYAAITPSCL--------- 141

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVTP 250
                   + VQ A    LPL+A +++L L +ED E H +L  +  H TV S ++      
Sbjct: 142  -------KAVQTARHLALPLLACDDALLLEKEDKEVHRILRCMDLHKTVGSLQEEDCAAQ 194

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKEEE 308
             + L +  +    FS  PEA++NT         +LQ + P     I  E   +D  KE  
Sbjct: 195  CNVLLDPDQWNQAFSCWPEAVDNTN--------LLQAYDPFPSSLIFPEYPVEDAAKE-- 244

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
                      LE R+ +GA  +     D   +R+ +EL +I    F+ YFL++ D +Q +
Sbjct: 245  ----------LEARVLKGAEVRYGEVNDAIMERITYELAIIRDKGFAPYFLVMHDIVQMS 294

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +       GRGSGA S+ +Y L IT++DPL + L FERFL+P R+  PD D+DF  D R
Sbjct: 295  SRTC-----GRGSGAASIVSYCLFITNVDPLAYHLYFERFLSPSRLDPPDIDVDFAWDER 349

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D V   V  ++G +  A++      + + A+R+ GR   +  +Q+               
Sbjct: 350  DGVFAAVFERFGIDHCARVANHNCFRLRGAVRETGRCYGLSDTQITE------------- 396

Query: 488  SLQAIADDSRFREAR--LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                 A+   F   +  L DP    +  I+ KLEGL +  S H  G+VI  +P+    P+
Sbjct: 397  -----AEKKLFISGQKDLDDPLWQTICRIATKLEGLPKEISMHCGGLVITPKPVHCYAPL 451

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI-PFD 604
             R      P+  +  +  E AG +K D LG ++L +++ +L+ L +  + +D  L  P +
Sbjct: 452  -RLSSDGYPLLAWEKEGTEMAGFVKIDLLGNRSLAVIRDTLENLKEEELSIDQRLWHPTE 510

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  T   L    ++G+F +ES  MRQ  +       E I+   S+ RP     I  Y  R
Sbjct: 511  DGPTIAALEKGDSMGVFYIESPAMRQLQKKTGRGDFEHIVIHSSIIRPAANKFIAEYVER 570

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KE 723
              GK K   +HP +  +L ET G++ YQE V + A  L+G++ ++AD LR+ + KK   E
Sbjct: 571  LRGK-KWEPLHPRLSYILDETYGILCYQEDVSKTAVALAGFNEADADKLRKVIAKKAGGE 629

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            ++   +++F  G   N +S+     I+E++  F  Y F K H+A+YA++S+Q+A+++ H+
Sbjct: 630  KLRVYRKQFFDGCKANAVSEQTTQQIWEMMLSFDGYSFCKPHSASYAMVSFQSAYLRVHH 689

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P  F+AA ++       + + +  +AR+  I +  P +NT  + +    N ++  L AI 
Sbjct: 690  PSHFMAAVLS-NQGGYYRSQAYISEARRMGINVEGPDINTSRICYHAQGNTLFIGLMAIA 748

Query: 844  GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG--YSRMQ 900
             +   T   I+ E      F  L+D  +R+D   L R    SLV +G  D  G  Y R +
Sbjct: 749  NLKEQTRMQILAERRKGGLFFDLKDASTRLD---LCREDWVSLVESGCCDSLGRQYRRSE 805

Query: 901  LLQS-LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
             L+  L N ++        R+++ E +FA EK       +L    V+++      E   L
Sbjct: 806  QLRILLTNAER------TTRSDQLE-LFAPEKHIPGQTRSL--VQVKHTEDELHREFSAL 856

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            GF  S HPL ++   L+  G+K    S ++   G  + L    ++++Q  T+ G  + +V
Sbjct: 857  GFLRSYHPLLLWSSYLQ--GLKRVRASELSQYVGRYVNLIGYQITQKQVMTKTGESMSFV 914

Query: 1019 TFSEPAKEYEANFFP 1033
            +F +    YE   FP
Sbjct: 915  SFEDETALYETVLFP 929


>gi|239816178|ref|YP_002945088.1| DNA polymerase III, subunit alpha [Variovorax paradoxus S110]
 gi|239802755|gb|ACS19822.1| DNA polymerase III, alpha subunit [Variovorax paradoxus S110]
          Length = 1118

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 285/1067 (26%), Positives = 469/1067 (43%), Gaps = 121/1067 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S   GA +   ++++       A+AITD            +   AGI 
Sbjct: 33   PDYAELHCLSNFSFQRGASTPEELVERAYQLGYTALAITD------------ECSVAGIV 80

Query: 69   PIIGCQLDIDMQ-DNLKMTNQGKTPFPTVPS---------------IVLLVSTAEGYQRL 112
                C  D+  + +  +  + G+ P P  P                +V++ +  EG+  L
Sbjct: 81   RAHVCLRDLPAKLEEYEREHPGEPPLPRNPGFRLLFGSEFRFERFRLVVIANGTEGWGNL 140

Query: 113  IELVSRMYLLDQGKQSVRICLSW-------LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
             E ++     +  K   R+  SW       LQ+   + L +        +D A       
Sbjct: 141  CEFITAARNTELPKGEYRV--SWEHSDVASLQD--CQVLFVPHREPGAAVDAATLHED-- 194

Query: 166  VAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
                 LL  K L+   L++ ++  +   D    + ++Q      +PLVA  +    +   
Sbjct: 195  -----LLAAKALYAGNLWLAVEMLNELDDDLWFAALMQAGEQTGVPLVAAGDVHMHARSA 249

Query: 225  YEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
               HDVL AV     V++     +   + +L+ R  +  ++  LP  L NT+ +A RC F
Sbjct: 250  KPLHDVLTAVREGKTVAECGFALQSNAERHLRQRVRLAELY--LPRMLANTLVVAERCRF 307

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
              +V        +E         E   L  K   G +VR  +G   K       R +L+ 
Sbjct: 308  DPEVIRENYKYPLETVGSSETPAET--LVRKTWEGAQVRFPEGIPDK------VRAQLEK 359

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL +I  MK+  +FL V D +++A+  +I +  GRGS A S   Y L IT I+P +  LL
Sbjct: 360  ELALIVEMKYEMFFLTVEDIVRFARSQSI-LCQGRGSSANSAVCYCLGITAINPEKGHLL 418

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFL+  R   PD D+DF   RR+EVI+Y+  KYG ER A        +A++ALRDVG+
Sbjct: 419  FERFLSRHRHEPPDIDVDFEHQRREEVIQYIYQKYGRERAAIAAVVICYRARSALRDVGK 478

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL-----LEISQKL 518
            A+ +    +D   K       H      +  +  F+ A       D L     +E++++L
Sbjct: 479  AMGIDERLIDEFAK------DHYWFDDTVLGEQLFKAAARVGVQEDELKLVQWIEMTRRL 532

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            +G  RH S H  G V+    L++LVP+ +    D  V Q+    +E  G++K D L L  
Sbjct: 533  KGFPRHLSQHVGGFVLTHTRLTRLVPVEKASMKDRSVIQWEKDDLEAMGMLKVDVLALGM 592

Query: 579  LTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            L+ +++ LD + + RG  V +  IP DD + + ++    T+G+FQ+ES      L  ++P
Sbjct: 593  LSAIRRGLDHMNRWRGSMVQMHHIPNDDQKVFDMICDADTIGVFQIESRAQMSMLPRLKP 652

Query: 638  DCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIH---PLIDPMLKETQGVIIYQ 692
             C ED++  V++ RPGPI   +V  Y  ++    K + IH     + P L+ T G+ I+Q
Sbjct: 653  RCYEDLVIEVAIVRPGPIQGGMVHPYLKQRERVAKGLEIHYEKEELKPALERTLGIPIFQ 712

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            EQVMQIA + + ++  EAD LRRAM   K K  ++K   + + G + +G     A  IF+
Sbjct: 713  EQVMQIAMIAARFTADEADQLRRAMAAWKRKGGLEKFHHKLVKGMTDHGYKAEFAEAIFK 772

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  F DYGF +SHAA++A++   ++W+K + P  FLAA +  +        +  QDAR+
Sbjct: 773  QILGFGDYGFPESHAASFALLVTVSSWLKNYEPACFLAALLDSQPMGFYSPSQLVQDARR 832

Query: 812  FNIQIMPPSVNT------------------PCVDFKVGDN-------RIYYSLAAIKGVG 846
              +++ P  V                    P  D +  D         +   L  I  + 
Sbjct: 833  HGVEVRPADVTCSDIDTTLEARAPDAPRMPPGTDARYADRLGRENQPAVRLGLNRISSLS 892

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A+ ++EA A  PF S ED   R +    +   L +     +L   G+ R Q+  +  
Sbjct: 893  KEGAKRLLEARAQAPFTSTEDLALRAELDGKDMAALAAADALMSLS--GHRRQQVWDA-- 948

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                      + R+       A  KG   ++  L+             +   LG     H
Sbjct: 949  --------TAQRRSP------ALLKGVPINEPVLQ-LPAAPEGEEIVGDYAALGLTLRRH 993

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            PL + +P L +M +   E+  A   G  +R   +V  +Q+  T  G+
Sbjct: 994  PLALLRPRLARMKLMSAEQLRAQPSGQTVRACGIVKGRQRPGTANGT 1040


>gi|329851038|ref|ZP_08265795.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19]
 gi|328839884|gb|EGF89456.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19]
          Length = 1069

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 285/1027 (27%), Positives = 469/1027 (45%), Gaps = 98/1027 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ LQV + +S L GA S   +  + A     A+ + D N+L   ++  + A A G++ 
Sbjct: 2    TYIELQVTTHFSFLRGASSPEELFHRAAELGIEALGVVDRNSLAGIVQAHKWAKATGVRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE--GYQRLIELVSRMYLLDQGKQ 127
            I+GC+LD+                  V    LLV   +   Y  L  L+S    L +G+ 
Sbjct: 62   IVGCRLDL------------------VDGASLLVYPTDKAAYSHLCRLLS----LGKGRA 99

Query: 128  SVRIC-LSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                C L W   E    GLI +              ++  +  +RL T   +FGDR Y+ 
Sbjct: 100  GKGKCQLDWNDVEAWNAGLIAVLVPDMAD-------DTCALNLRRLAT---IFGDRAYLA 149

Query: 186  LQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L  R R  D  R  ++ Q+A    +P VATN+ L+         DV+  + H+  + +  
Sbjct: 150  LTLRRRPNDALRLYELTQIAVKLGVPTVATNDVLYHDASRRILQDVVTCIRHNCTIDEAG 209

Query: 245  -RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R     D YLK   EM  +F   P+A+  T EIA RC            RF  KE +  
Sbjct: 210  FRRERHADRYLKPGDEMARLFKAYPDAVARTQEIAARC------------RFDMKELEYQ 257

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIV 360
              +E++         LE  +  GA AK Y         ++L  EL++IA M ++ YFL V
Sbjct: 258  YPDEKSHPHLTPQQALEKFVRIGA-AKRYPDGVPDKVEKQLRHELDLIAEMGYANYFLTV 316

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +A+  +I +  GRGS A S   Y L IT++DP ++ LLF RFL+ +R   PD D+
Sbjct: 317  HDIVHFARSQDI-LCQGRGSAANSSVCYVLGITELDPAKYDLLFARFLSKNRNEPPDIDV 375

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR+ V+++V + YG +  A +      + + ALRDVG+AL +P   +  L +   
Sbjct: 376  DFEHARREIVMQWVFDTYGRDHAALVAVVTRYRIRGALRDVGKALGVPEDVLKVLAQQYR 435

Query: 481  N-----DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            +     D  H   L    D  R R            L+++++L    RH S H  G V+ 
Sbjct: 436  HWATELDETHLEGLNLNRDARRIRLT----------LDLTRQLVNAPRHLSQHPGGFVLT 485

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
               L  L  +      +  V +++   I++   +K D L L  LT ++KS D LA+ +GV
Sbjct: 486  RDRLDDLAVIEPAAMKNRQVIEWDKDDIDELKFMKVDCLALGMLTCMKKSYDMLAEHKGV 545

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP DD  TY ++    T+G+FQ+ES      L  ++P    DI   V++ RPGP
Sbjct: 546  AMDMAGIPADDKPTYAMICKADTVGVFQIESRAQMSMLPRLRPANFYDIAIEVAIVRPGP 605

Query: 655  I--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            I  D +  Y  RK+G E I   +  +  +L  T GV ++QE  M++A + +G+S  EAD 
Sbjct: 606  IQGDMVHPYLRRKHGLEPIEYPNEAVRDILGRTFGVPLFQEHAMKVAVVCAGFSDDEADH 665

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +RR++   K    +   +++  +G    G S   +  +   L  F  YGF +SHA ++A+
Sbjct: 666  VRRSLATFKHTGGVKNFRDKMYAGMIGRGYSPEFSERLINQLEGFGSYGFPESHAISFAL 725

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            I+Y ++WMK H+P  FL A +  +        +  +DAR+  + + P  VN    D  + 
Sbjct: 726  IAYASSWMKCHHPDVFLCALLNSQPMGFYAPAQLVRDAREHGVDVRPVCVNASRYDCTLE 785

Query: 832  DNRIYYSLAA------IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            +      LA       IKG+    A  ++ A+ ++ + S+ +        + +   + +L
Sbjct: 786  ETGTPGKLAVRLGFRMIKGMSEDEAA-VLVAAREERYGSIREVW------RHSGLPVSTL 838

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            V     D F         SL   ++ A W  K   +    +F   + T    + L+  + 
Sbjct: 839  VRLAEADAF-------FPSLGQSRREALWALKGMRDTPLPLFDGPE-THEPAVVLKAMTA 890

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +  V+       +G     HP+   +  L + GI   + + A    ++  +A MV+ +Q
Sbjct: 891  GSEVVQDYGH---VGLSLRRHPVSFLRGELSERGIVTCKAANARKDKSHALVAGMVLVRQ 947

Query: 1006 QKKTRKG 1012
            +  T KG
Sbjct: 948  RPGTAKG 954


>gi|325925608|ref|ZP_08186993.1| DNA polymerase III, alpha subunit [Xanthomonas perforans 91-118]
 gi|325544008|gb|EGD15406.1| DNA polymerase III, alpha subunit [Xanthomonas perforans 91-118]
          Length = 1082

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 277/1037 (26%), Positives = 472/1037 (45%), Gaps = 104/1037 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G++
Sbjct: 46   PAYAELHCLSDFSFLRGASSAEQLFVRAQHCGYSALAITDECSLAGIVRGLEASRATGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +    + D  +               VLLV  A GY +L  L++        K +
Sbjct: 106  LIVGSEFA--LVDGTR--------------FVLLVENAHGYPQLCGLITTARRA-ASKGA 148

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + +Q    +           P   A +   +Q   ++    +++FG+R ++ ++ 
Sbjct: 149  YRLGRAEVQAQFRD---------VAPGVFALWLPGAQPQAEQGAWLQQVFGERAFLAVEL 199

Query: 189  HRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D     QV+Q LA    +  +A+ +       +    D L A+ H+  +++     
Sbjct: 200  HREQDDVARLQVLQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRHTLPLAECGAHL 259

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  + +I+ D    L+ TVE+A+RC+F +       PR +  +       
Sbjct: 260  FRNGERHLRTRRALGNIYPD--GLLQATVELAQRCTFDISKLQYTYPRELVPQ----GHT 313

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR    AG+  R   G   K       R  ++ EL +IA +++  +FL V D +++
Sbjct: 314  PASYLRQLTEAGMRERWPDGVPKK------IRDDIENELALIAELEYEAFFLTVQDVVRF 367

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A S   YAL IT +DP +  LL  RFL+  R   PD D+DF  +R
Sbjct: 368  ARSKDI-LCQGRGSSANSAVCYALGITSVDPSKTRLLISRFLSKARNEPPDIDVDFEHER 426

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAH 485
            R+EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L       +   
Sbjct: 427  REEVLQYVYAKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGET 486

Query: 486  PVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            P+       + R  EA   LA+P ++++L ++  L    RH S H  G VI D PLS LV
Sbjct: 487  PM-------EQRIEEAGFDLANPLINKILLVTDHLRDHPRHLSQHVGGFVISDEPLSLLV 539

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
            P+     +D  + Q++   +E   L+K D L L  LT ++K+LD +   R     L+ +P
Sbjct: 540  PVENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRHRDYTLATLP 599

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+ 
Sbjct: 600  DEDAATYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHP 659

Query: 663  NRKNGKEKIVSIHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
              +  K+K +  +P   ++ +L  T G+ ++QEQVM++  + +GY   EAD LRR+M   
Sbjct: 660  YLQRRKDKSLINYPSEGVEQILGPTLGIPLFQEQVMELV-IHAGYDPDEADKLRRSMAAW 718

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            +   +M+  + R  +     G + +    IFE +  F  YGF +SHAA++A + Y + W+
Sbjct: 719  RRGGDMESHRVRIRALMEGKGYASSFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWL 778

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-----IQIMPPSVNTPCVDFKVGDNR 834
            K H P  F    +  +        +  QDAR+ +     ++++P  V     D  +   R
Sbjct: 779  KRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWDNALVGGR 838

Query: 835  IYYS-------------LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
             + S             +  + G+    A+ I+ A   + F  + D C R     L+ + 
Sbjct: 839  PWRSAVDPGEQPAIRLGMRQVAGLSQVVAQRIVAARTQRAFADIGDLCLRA---ALDEKA 895

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ-WVEKNRT----NKHENIFAHEKGTFSD 936
              +L  AGAL     +R        N  ++A   VE  R     +  E   A E     +
Sbjct: 896  RLALAEAGALHGMVGNR--------NAARWAMAGVEARRPLLPGSPEERPVAFEAPRAGE 947

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            +I  +  SV              G     HP+ + +P +R+  I G  E      G+ + 
Sbjct: 948  EILADYRSV--------------GLSLRQHPMALLRPQMRQRRILGLRELQGRRHGSGVH 993

Query: 997  LAAMVVSKQQKKTRKGS 1013
            +A +V  +Q+  T KG+
Sbjct: 994  VAGLVTQRQRPATAKGT 1010


>gi|115352937|ref|YP_774776.1| error-prone DNA polymerase [Burkholderia ambifaria AMMD]
 gi|115282925|gb|ABI88442.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria AMMD]
          Length = 1071

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 290/1044 (27%), Positives = 468/1044 (44%), Gaps = 94/1044 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASHAEELVERAAELGYRGIAITDECSLAGAPRMHVAAKAQGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G   ++   +       G  P P    +VLL    EGY  L EL+S   +    K +
Sbjct: 69   LIVGSFFEVTPDE----VTPGHDPGPGAFGLVLLAQNREGYGNLSELISWRRMASP-KGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             R+    L     E   +        I    +   + V + ++  F+  FG R  + L Q
Sbjct: 124  YRLTSRMLSAPPAEFAHLRGMPDCFAILVPTYPVRADVLDAQVAWFRATFGARARLGLVQ 183

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D  +  ++        + +VA  +            DV+ A+     VS+     
Sbjct: 184  LQRPLDGAQREEIRAAGERRGVRIVALGDVTMHRRSCKPLQDVMTAIRVGMPVSECGYA- 242

Query: 248  VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSF---ILQVHAP--ILPRFIEKEC 300
            + P  + +L+ R  +  +FS  PE L+ T  I   C F    LQ   P  I+P+ +    
Sbjct: 243  LAPNAEQHLRARGRIAKLFS--PEELDETCAILDACDFKLDSLQYEYPDEIVPKGLTPT- 299

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                      L  +  AG   R  QG   K        +++ +EL++IAR+ +  +FL V
Sbjct: 300  --------RHLEQETFAGAAARYPQGIPEK------VERQIRYELDLIARLSYEPFFLTV 345

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +++A+  NI +  GRGS A SV  Y L IT+++P + ++LFERF++ +R   PD D+
Sbjct: 346  YDIVKYARSQNI-LCQGRGSAANSVVCYCLGITEVNPEQSTMLFERFISEERGEPPDIDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR+EVI+++  KYGH+R A      + + +  LR+ G+AL +    VDR+ K   
Sbjct: 405  DFEHQRREEVIQHIYKKYGHDRAALAAAVSTYRPRGVLRETGKALGVDPMLVDRVAK--- 461

Query: 481  NDPAHPVSLQAIADDSR-----FREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
               AH        D SR     F    L  A P +    E++ +L    RH S H+ G V
Sbjct: 462  ---AH-----RWFDGSRDLLQQFASTGLDPATPIIRAWAELAGRLLNFPRHLSQHSGGFV 513

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQR 592
            I    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ D   A R
Sbjct: 514  ISRGKLTRLVPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWR 573

Query: 593  GVKVD-----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            G + D     L  IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  V
Sbjct: 574  GPQEDGQPFTLKHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLKPRNYYDLVVEV 633

Query: 648  SLYRPGPIDNIVVYNNRKN-----GKEKIVSIHP--LIDPMLKETQGVIIYQEQVMQIAQ 700
            S+ RPGPI    V+   K      G+E+    +P   +  +L+ T GV I+QEQVMQIA 
Sbjct: 634  SIVRPGPIQGGAVHPYLKRRRIQAGEEEGEITYPSDALRVVLERTLGVPIFQEQVMQIAI 693

Query: 701  LLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            + +G++  EAD LRRAM   K + ++    ++ ++G  + G ++  A  IFE +  F +Y
Sbjct: 694  VAAGFTPGEADRLRRAMAAWKRRGDLGPYHDKIVNGMLERGYTREFAEQIFEQIKGFGEY 753

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++  +Q++P 
Sbjct: 754  GFPESHAASFAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHGVQVLPI 813

Query: 820  SVNTPCVDFKV----------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
             V     +  +          G   +   L+ ++G+G   AR I  A A  PFD+++   
Sbjct: 814  DVTLSNWEASLEALPDQPPPHGQPAVRLGLSLVRGLGEAAARRIEAARAAGPFDNVDVLA 873

Query: 870  SRVDSKKLNRR-VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             R    +L RR +         +   G+ R  L Q++                   ++ A
Sbjct: 874  RRA---QLERRDLEALAAANALVTLAGHRRDALWQAVA-------------AAPERDLLA 917

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
                   +K  L   S  +  +    +    G   + HP+ + +P LR   +    E   
Sbjct: 918  AAPIDEPEKPALGAPSEADDIL---ADYDTTGLTLNRHPVALLRPALRAQRLSSAAELRD 974

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKG 1012
               G   R   +V ++Q   T KG
Sbjct: 975  RSDGRLARACGIVTARQMPGTAKG 998


>gi|21220233|ref|NP_626012.1| DNA polymerase III subunit alpha [Streptomyces coelicolor A3(2)]
 gi|5531449|emb|CAB50954.1| putative DNA polymerase III, alpha chain [Streptomyces coelicolor
            A3(2)]
          Length = 1185

 Score =  331 bits (848), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 291/1093 (26%), Positives = 481/1093 (44%), Gaps = 118/1093 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-AGI 67
            P F HL   S +S   GA     + ++       A+A+TD + L   + F+ KACA AG+
Sbjct: 2    PGFTHLHTVSGFSARYGASHPERLAERAFERGMDALALTDRDTLAGTVRFA-KACAKAGV 60

Query: 68   QPIIGCQLDI--------DMQDNLKMTNQGKTPF-------PTVPSIVLLV-STAEGYQR 111
            +P+ G +L +        D  +     ++ + P         + P +  L    A G+  
Sbjct: 61   RPLFGAELAVAAPESAAADRTETSVRRDRRRAPVRGGAFVDESAPRVTFLARDGARGWAD 120

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L  LVS  +  +         LSW  +   +GL +L G  S  + RA        A + L
Sbjct: 121  LCRLVSAAHTAEGSP-----LLSW-PDNHADGLTVLLGPDS-DVGRALAAGRPDRAARLL 173

Query: 172  LTFKKLFGDRLYVNLQRHR----GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            + +++++GD L +    H     G    R  ++ V  A    +  V +N   +      E
Sbjct: 174  VPWREVYGDALRLEAVWHGRTGIGPGSLRLAARTVGFAAEQGVRPVLSNAVRYADPGQGE 233

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
              DVL A A   V     +   + + +LK+   M      + E+     + A R   + Q
Sbjct: 234  VADVLDA-ARRLVPIGATKELDSGEAWLKDAGAMRHAAERIVESAGFRRDTAHR--LLEQ 290

Query: 287  VHAPILPRFIEKECDDI--------QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ--- 335
              A      ++ E DD+        +       R  A   L  R A G + +GY  +   
Sbjct: 291  TRATAAECLVDPE-DDLGMGAVHFPEPHLVGAGRRTAQRALASRAAAGMVRRGYDRRRDH 349

Query: 336  -DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
             +Y +R+  EL++IA   F+ YFL VA  +   +   I V   RGSGAGS+  + L I  
Sbjct: 350  REYWERMHHELDIIAHHGFASYFLTVAQVVDDVRHMGIRVA-ARGSGAGSLVNHLLGIAH 408

Query: 395  IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
             DP+   LL ERFL+ +R+ +PD DID    RR EV R +  ++G ERVA +    + + 
Sbjct: 409  ADPVEHGLLMERFLSKERVVLPDIDIDVESARRLEVYRAIIGRFGTERVATVAMPETYRV 468

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA---------- 504
            + A+RDVG AL M  +++DR+ K  P+               R R+AR A          
Sbjct: 469  RHAIRDVGAALSMDPAEIDRVAKSFPH--------------IRARDARAALEELPELKEL 514

Query: 505  --------DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
                         RL E+ + L+ L R  + H  G+++ D  L    P+       LP+ 
Sbjct: 515  AGESRRDGGGRYGRLWELVEGLDALPRGVAMHPCGVLLSDASLLSRTPVVPTSGEGLPMA 574

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTK 615
            QF+   +E  GL+K D LG++  + +  ++  + +  G +VDL  +P  D  TY ++ + 
Sbjct: 575  QFDKDDVEDLGLLKLDVLGVRMQSAMAHAVAEVKRATGTEVDLDAVPEGDPATYRMIRSA 634

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVS 673
             TLG FQ+ES G R  +  +QP    D++  +SL+RPGP+  D +  +   ++G+  +  
Sbjct: 635  ETLGCFQIESPGQRDLVGRLQPATFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRH 694

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
             H  +   L  T GV+++ EQ++ I  +++G    EAD +RR +     E   + K  F 
Sbjct: 695  PHEDLAEPLAGTYGVVVFHEQIIDIVAIMTGCGRGEADRVRRGLSD--PESQGRIKVWFA 752

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
              A+ NG         +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T
Sbjct: 753  QHATANGYDAETIQRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLT 812

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDNR-----IYYSLAAI 842
             +     K +    DAR+  + I+P  VN   V  ++      G  +     +  +L+ +
Sbjct: 813  HDPGMYPK-RLLLADARRRGVPILPLDVNESGVAHRIELVSESGSRKPATWGLRLALSDV 871

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             G+    A  I   +  +P+ SL DF  R    + +R +   L   GALD FG +R  L 
Sbjct: 872  HGISEAEAERI---ATGQPYASLLDFWERA---RPSRPLAGRLAQVGALDAFGANRRDLQ 925

Query: 903  QSLDNIQKYAQWVEKNR---TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
              L  + + A+    ++   T   +   A       D  + EK S E           VL
Sbjct: 926  LHLTELHRGARGGRGDQLPLTGGRKTASA----GLPDLTSEEKLSAELG---------VL 972

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
                S + +D ++  LR++G+   +       G  + +A    + Q    R G R+ + T
Sbjct: 973  SMDASRNLMDDHRTFLRELGVVSAKRLREARHGETVLVAGAKAATQTPPVRSGRRVIFST 1032

Query: 1020 FSEPAKEYEANFF 1032
              + +   +  FF
Sbjct: 1033 LDDGSGLVDLAFF 1045


>gi|166711029|ref|ZP_02242236.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzicola
            BLS256]
          Length = 1083

 Score =  331 bits (848), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 275/1032 (26%), Positives = 467/1032 (45%), Gaps = 93/1032 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + +   G++
Sbjct: 46   PTYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRVTGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +    + D  +               VLLV  A GY +L  LV+        +++
Sbjct: 106  LIVGSEFT--LIDGTR--------------FVLLVENAHGYPQLCGLVT------TARRA 143

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                   L     E           P   A +    Q   ++    +++FG+R ++ ++ 
Sbjct: 144  ASKGAYRLGRADVEAQFR----DVAPGVFALWLPGVQPQAEQGAWLQQVFGERAFLAVEL 199

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D   R   +  LA    +  VA+ +       +    D L A+ H+  +++     
Sbjct: 200  HREQDDGARLQALQALAQQLGMTAVASGDVHMAQRRERIVQDTLTAIRHTLPLAECGAHL 259

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  + +I+ D    L+  V +A+RC+F +   +   PR +  E       
Sbjct: 260  FRNGERHLRTRRALGNIYPD--ALLQAAVALAQRCTFDISKISYTYPRELVPE----GHT 313

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR    AG+  R   G  AK       R+ ++ EL +IA  K+  +FL V D +++
Sbjct: 314  PTSYLRQLTEAGIRKRWPGGITAK------VREDIEKELALIALKKYEAFFLTVQDVVRF 367

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++ NI +  GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF  +R
Sbjct: 368  AREQNI-LCQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHER 426

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAH 485
            R+EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L       +   
Sbjct: 427  REEVLQYVYRKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGET 486

Query: 486  PVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            P+       + R  EA   LA+P ++++L +++ L    RH S H  G VI D PLS LV
Sbjct: 487  PM-------EQRIEEAGFDLANPLINKILLVTEHLCDHPRHLSQHVGGFVISDEPLSLLV 539

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
            P+     +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P
Sbjct: 540  PVENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRCHRGRDYSIATLP 599

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  
Sbjct: 600  GEDLPTYKMIQRADTVGVFQIESRAQMAMLPRLKPAKFYDLVIEVAIVRPGPIQGDMVHP 659

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+ G+E +    P ++ +LK T GV ++QEQVM++    + Y+ SEAD LRR+M   
Sbjct: 660  YLRRRQGREDVSYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYTESEADNLRRSMAAW 719

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            +   +M++ + R        G + T    IFE +  F  YGF +SHAA++A + Y + W+
Sbjct: 720  RRGGDMEQHRTRVRERMQGKGYASTFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWL 779

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-----IQIMPPSVNTPCVDFKVGDNR 834
            K H P  F    +  +        +  QDAR+ +     ++++P  V     D  +   R
Sbjct: 780  KRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVVHSDWDNTLVGGR 839

Query: 835  IYYSLA-------------AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
             + S A              + G+    A+ I+ A   + F  + D C R     L+ + 
Sbjct: 840  PWRSAADPGEQPAIRLGMRQVAGLSDVVAQRIVAARTQRAFADIGDLCLRA---ALDEKA 896

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
              +L  AGA           LQ +   +  A+W       +   +     G+  ++    
Sbjct: 897  RLALAEAGA-----------LQGMVGNRNAARWAMAGVEARRPLL----PGSPEERPV-- 939

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
             F   ++      + R +G     HP+ + +P +R+  I G  +      G+ + +A +V
Sbjct: 940  AFEAPHAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLHDLQGRPHGSGVHVAGLV 999

Query: 1002 VSKQQKKTRKGS 1013
              +Q+  T KG+
Sbjct: 1000 TQRQRPATAKGT 1011


>gi|172061785|ref|YP_001809437.1| error-prone DNA polymerase [Burkholderia ambifaria MC40-6]
 gi|171994302|gb|ACB65221.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MC40-6]
          Length = 1071

 Score =  330 bits (847), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 292/1044 (27%), Positives = 466/1044 (44%), Gaps = 94/1044 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASHAEELVERAAELGYRGIAITDECSLAGAPRMHVAAKAQGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G   ++   +       G  P P    +VLL    EGY  L EL+S   +    K +
Sbjct: 69   LIVGSFFEVTPDE----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISWRRMASP-KGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             R+    L     E   +        I    +   + V + ++  F+  FG R  + L Q
Sbjct: 124  YRLTSRMLSAPPAEFAHLRGMPDCFAILVPTYPVRADVLDAQVAWFRATFGARARLGLVQ 183

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D  +  ++        + +VA  +            DV+ A+     VS+     
Sbjct: 184  LQRPLDGAQREEIRAAGERRGVRIVALGDVTMHRRSCKPLQDVMTAIRVGMPVSECGYA- 242

Query: 248  VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSF---ILQVHAP--ILPRFIEKEC 300
            + P  + +L+ R  +  +FS  PE L+ T  I   C F    LQ   P  I+P+ +    
Sbjct: 243  LAPNAEQHLRARGRIAKLFS--PEELDETCAILDACDFKLDSLQYEYPDEIVPKGLTPT- 299

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                      L  +  AG   R  QG   K        +++ +EL++IAR+ +  +FL V
Sbjct: 300  --------RHLEQETFAGAAARYPQGIPEK------VERQIRYELDLIARLSYEPFFLTV 345

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +++A+  NI +  GRGS A SV  Y L IT+++P + ++LFERF++ +R   PD D+
Sbjct: 346  YDIVKYARSQNI-LCQGRGSAANSVVCYCLGITEVNPEQSTMLFERFISEERGEPPDIDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR+EVI+++ +KYGH+R A      + + +  LR+ G+AL +    VDR+ K   
Sbjct: 405  DFEHQRREEVIQHIYDKYGHDRAALAAAVSTYRPRGVLRETGKALGVDPMLVDRVAK--- 461

Query: 481  NDPAHPVSLQAIADDSR-----FREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
               AH        D SR     F    L  A P +    E++ +L    RH S H+ G V
Sbjct: 462  ---AH-----RWFDGSRDLLQQFASTGLDPAMPIIRAWAELAGRLLNFPRHLSQHSGGFV 513

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQR 592
            I    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ D   A R
Sbjct: 514  ISRGKLTRLVPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWR 573

Query: 593  GVKVD-----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            G + D     L  IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  V
Sbjct: 574  GPQEDGQPFTLKHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLKPRNYYDLVVEV 633

Query: 648  SLYRPGPIDNIVVYNNRKN-----GKEKIVSIHP--LIDPMLKETQGVIIYQEQVMQIAQ 700
            S+ RPGPI    V+   K      G+E+    +P   +  +L+ T GV I+QEQVMQIA 
Sbjct: 634  SIVRPGPIQGGAVHPYLKRRRIMAGEEEGEVTYPSEALKEVLERTLGVPIFQEQVMQIAI 693

Query: 701  LLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            + +G++  EAD LRRAM   K K  ++K   + I G  +   ++  A  IFE +  F +Y
Sbjct: 694  VAAGFTPGEADELRRAMAAWKRKGNLEKYHGKIIDGMLERNYTREFAEQIFEQIKGFGEY 753

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++  +Q++P 
Sbjct: 754  GFPESHAASFAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHGVQVLPI 813

Query: 820  SVNTPCVDFKV----------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
             V     +  +          G   +   L+ ++G+G   AR I  A A  PFD+++   
Sbjct: 814  DVTLSNWEASLAALPDQPPPHGQPAVRLGLSLVRGLGEAAARRIEAARAAGPFDNVDVLA 873

Query: 870  SRVDSKKLNRR-VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             R    +L RR +             G+ R  L Q++                   ++ A
Sbjct: 874  RRA---QLERRDLEALAAANALATLAGHRRDALWQAVA-------------AAPERDLLA 917

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
                   +K  L   S  +  +    +    G   + HP+ + +P LR   +    E   
Sbjct: 918  AAPIDEPEKPALGAPSEADDIL---ADYDTTGLTLNRHPVALVRPALRAQRLSSAAELRD 974

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKG 1012
               G   R   +V ++Q   T KG
Sbjct: 975  RSDGRLARACGIVTARQMPGTAKG 998


>gi|167621850|ref|YP_001676635.1| DNA polymerase III, alpha subunit [Caulobacter sp. K31]
 gi|167351591|gb|ABZ74321.1| DNA polymerase III, alpha subunit [Caulobacter sp. K31]
          Length = 1053

 Score =  330 bits (847), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 285/1021 (27%), Positives = 469/1021 (45%), Gaps = 83/1021 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V LQ  S +SLL GA S   + D+       A+AI D N++   +     A A G++ I
Sbjct: 12   YVELQCASHFSLLRGASSPGELFDEAQRLGYRALAICDRNSVAGVVRAHIAAKATGVRLI 71

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC+L         +   G T       +V+L +    Y RL  L+S    L + +    
Sbjct: 72   IGCEL---------VLRCGLT-------LVVLPTDRAAYGRLCRLLS----LGKSRAGKG 111

Query: 131  ICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             C   L+++    +GLI +      P D         +   +L     +FG   ++ L  
Sbjct: 112  QCDLGLEDLAAHAQGLIAILV-PDAPDD---------LCALQLKKVAAIFGVDAHLALTL 161

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS----QK 243
            R R  D  R  Q+  +A    +  V TN  LF  +      DV+  +   T +     ++
Sbjct: 162  RRRPGDALRLHQLEAMARQAGVRPVVTNRVLFHEKGRRLLQDVVTCIREGTTIDDVGFKR 221

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR     D YLK  SE+  + +  P+A+  +VEIARRC F L   +   P     E  + 
Sbjct: 222  DR---HADRYLKAPSEIQRLLAKHPDAVTASVEIARRCRFSLDELSYQYP----HEVSEP 274

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +  +  L      G   R   G  A      +  + L  EL +I  + ++ YFL V   
Sbjct: 275  GRTPQETLERLTWFGAAQRYPDGLPA------EVEKALAHELRLIGLLGYAPYFLTVNSI 328

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +Q+A+  +I +  GRGS A S   Y L +T IDP R  LLFERF++ +R   PD D+DF 
Sbjct: 329  VQYARGQDI-LCQGRGSAANSAVCYVLGVTSIDPERNDLLFERFVSQERNEPPDIDVDFE 387

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+ V++++   YG  R A +      + + A+RDVG+ L +P      L   I +  
Sbjct: 388  HERRETVMQWIFETYGRHRCALVAVVQRFRPRGAVRDVGKVLGLPEDMTKALSSQIWS-- 445

Query: 484  AHPVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                S + I ++S  R+    L+D  +   LE++Q L    RH S H  G V+ +  L +
Sbjct: 446  ---FSREDI-EESHARDVGLDLSDRRLRLTLELAQLLLNTPRHFSQHPGGFVLTEDRLDE 501

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600
            LVP+      D  + +++   I++   +K D L L  LT L++ LD L A + +  DL+ 
Sbjct: 502  LVPIEPARMQDRQIIEWDKDDIDELKFMKVDVLALGMLTCLKRGLDLLAAHKDIHKDLAT 561

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            IP +D  TY ++    TLG+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 562  IPPEDPRTYAMIRKADTLGVFQIESRAQMVMLPRLKPRSFYDLVIEVAIVRPGPIQGDMV 621

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R+ GKEK+    P ++ +L +T GV ++QEQ M++A   +G++  EAD LRR+M 
Sbjct: 622  HPYLRRREGKEKVSYPKPELEKVLGKTLGVPLFQEQAMRVAIECAGFTPGEADQLRRSMA 681

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K+   +   +++ + G    G  +  A   F  L  F  YGF +SHAA++A+++Y ++
Sbjct: 682  TFKMTGGVSHFRQKLLGGMVARGYPQDFAEQTFSQLEGFGSYGFPESHAASFALLAYASS 741

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CV---DFKVG 831
            W+K H+P  F AA +  +     +  +  +DA +  +QI P  VN     C    D   G
Sbjct: 742  WLKCHHPDVFCAALLNSQPMGFYQPAQIVRDAVEHGVQIRPICVNASRWDCTLEPDGDTG 801

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               +   +  +KG+    A  ++ A  ++P+ S+++   R  +K     VL  L  A A 
Sbjct: 802  RLAVRLGMRLVKGLADGDAAALVLARGEEPYRSIDEVWRRSGAKP---GVLGRLAEADA- 857

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
                      L SL   ++ A W  K   +    +F     +  ++  +   ++      
Sbjct: 858  ---------FLPSLGLARREAAWAIKALRDDALPLFDQPGASELNEPAVALKAMTEGREI 908

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
             E+   V G     HPL + +  L ++      +      G  I+ A +V+ +Q   + K
Sbjct: 909  VEDYSHV-GLSLRRHPLALLRSDLTRLRRAPCRDVAQGRDGRFIQTAGLVLVRQMPGSAK 967

Query: 1012 G 1012
            G
Sbjct: 968  G 968


>gi|297183532|gb|ADI19661.1| DNA polymerase III, alpha subunit [uncultured Alteromonadales
           bacterium HF4000_16C08]
          Length = 1023

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 226/730 (30%), Positives = 367/730 (50%), Gaps = 50/730 (6%)

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
           G D +R +   +LA  ++ P+VA    L    +D     VL A    + VS   R  ++ 
Sbjct: 156 GNDHHRFATYNRLAQHYDFPVVACTGVLMHHSDDLPLQHVLHATREHSTVSNLGRHAISN 215

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-----QVHAPILPRFIEKECDDIQ 304
            +  L+  +++  ++ +    ++NT  +A  C F L     Q  A ++P           
Sbjct: 216 AERSLRPINKIQKLYPE--RWIDNTSVLAGSCHFSLNEVRYQYPAELVP---------TG 264

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                 LR     G+ +R  +G       ++  R  ++ E+ +I    ++ +FL + D +
Sbjct: 265 YTAIAYLRQCVEKGIHIRFPEGL------SKKVRAIIEKEMKLIEEQDYAYFFLTLYDIV 318

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           Q+AK+  I +  GRGS A SV  Y L IT +DP + ++LFERF++ +R   PD D+DF  
Sbjct: 319 QFAKQQGI-LYQGRGSAANSVVCYCLEITAVDPRQINVLFERFISKERDEPPDIDVDFEH 377

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            RR+E+I+Y+  KYG ER A   T    + K+A +D G+AL    SQ+  + K I    +
Sbjct: 378 QRREEIIQYIYKKYGRERTAIAATVICYRFKSAFKDAGKALGFNESQLSFVVKQINRRDS 437

Query: 485 HPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                  I   S+  E  L   D  V +L+ I+++L G  RH S H  G VI   PL +L
Sbjct: 438 ------VIPWQSQLEELGLKGDDKRVKQLIHITEQLLGTPRHLSQHVGGFVISSGPLYEL 491

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
           VP+      +  + Q++   IE  GL+K D L L  L+ ++++   L      V +S IP
Sbjct: 492 VPVENAAMPERTIIQWDKDDIETLGLLKVDVLALGMLSAIRRTFA-LINTHYPVPVS-IP 549

Query: 603 F-----DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
           F     DD + + ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI  
Sbjct: 550 FITKLGDDPQVFDMICKADTVGVFQIESRAQMSMLPRLKPRCYYDLVVQIAIVRPGPIQG 609

Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
           D +  Y  R++G E I      +  +L  T GV I+QEQV+Q+A + +G+S  EAD LRR
Sbjct: 610 DMVHPYLLRRHGSESISYPSEEVKDVLSRTMGVPIFQEQVIQLAMVAAGFSGGEADQLRR 669

Query: 716 AMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           AM    K+  + + +++ I G    G  +  A N+FE +  FA YGF +SH+A++AV++Y
Sbjct: 670 AMASWKKDGRIFEFRDKLIKGMVARGYDENFAHNLFEQIKGFAGYGFPESHSASFAVLAY 729

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---- 830
            + W+K ++PVEF  A +           +  QDA++  I ++PP +N  C + +V    
Sbjct: 730 VSCWLKFYFPVEFYVALLNSWPMGFYSPSQLVQDAKRHKITVIPPCINQSCYEHQVVYHK 789

Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
           G  +I   LA IKG+G  TA  +      + F  +E     + S  + R  LE+L  AGA
Sbjct: 790 GYKKIQLGLAIIKGLGEATAHELCRQRPHEGFTRIET----IQSLNIRRDELEALASAGA 845

Query: 891 LDCFGYSRMQ 900
            +    +R Q
Sbjct: 846 FNALTGNRYQ 855


>gi|222108967|ref|YP_002551233.1| DNA polymerase III subunit alpha [Agrobacterium radiobacter K84]
 gi|221727889|gb|ACM30939.1| DNA polymerase III subunit alpha [Agrobacterium radiobacter K84]
          Length = 1087

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 260/925 (28%), Positives = 436/925 (47%), Gaps = 79/925 (8%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           S+  LQV + +S L GA S   + +   A     + + D N+L   +   + + A G++ 
Sbjct: 2   SYAELQVTTHFSFLRGASSAQELFETAKALGIEVLGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           ++GC+LD  + D +              S+++  +    Y RL  L++    L + +   
Sbjct: 62  VVGCRLD--LADGM--------------SVLVYPTDRAAYSRLTRLIT----LGKSRGGK 101

Query: 130 RIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             C L W      + ++    G  G +      ++  +  +++    ++FGDR YV+L  
Sbjct: 102 NNCILHW------DDVVAYNDGMIGILVPDLPDDTCGIQLRKM---AEVFGDRAYVSLCL 152

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK--DR 245
           R R  D+ R  ++  LA   ++  V TN+ LF      +  D++  +   T + +   +R
Sbjct: 153 RRRQNDQLRLHEISNLAARFKVRPVVTNDVLFHEPGRRQLQDIVTCIRTRTTIDEVGFER 212

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R   D YLK   EM  +F    +AL  T+EI RRC+F L+      P    +E     K
Sbjct: 213 ER-HADRYLKPPEEMQRLFPRYRQALARTMEIVRRCTFSLEELTYQYP----EEAIVPGK 267

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
           + +  L +     +  R  +G         D  + +  EL++I  MK++ YFL V   ++
Sbjct: 268 DAQASLEHYVWQCVPDRYPEGL------PPDVLKVVRHELDLIRTMKYAPYFLTVFSIVR 321

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +
Sbjct: 322 YARSQGI-LCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHE 380

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+++   Y  E+ A   T    +A+ A+RDVG+AL +P   +  L   +      
Sbjct: 381 RREEVIQWIYRTYTREKAALCATVTRYRARGAIRDVGKALGLPEDVIKALSSGM------ 434

Query: 486 PVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
             S      D   RE  L +P   RL   L+++Q+L G  RH   H  G V+    L  L
Sbjct: 435 -WSWSEEVCDRNVRELNL-NPDDRRLVLTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDL 492

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
           VP+      D  + +++   +E    +K D L L  LT + K+ D + + +   ++LS I
Sbjct: 493 VPIEPATMKDRQIIEWDKDDVEALKFMKVDILALGMLTCMAKAFDLIREHKDRDLNLSKI 552

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
             +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D + 
Sbjct: 553 EQEDSATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVH 612

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            Y  R+ GKE +    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M  
Sbjct: 613 PYLRRREGKEAVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMAT 672

Query: 720 -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K    + + K++ +SG  +NG +   A   F  L  F  YGF +SHAA++A+I+Y +++
Sbjct: 673 FKFTGGVSQFKDKLVSGMVRNGYAPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASSY 732

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVDFKVGD--- 832
           +K HYP  F AA +  +        +   DAR   +++ P  +N     C   ++G+   
Sbjct: 733 IKCHYPEAFCAALINSQPMGFYAPAQIVGDARAHGVEVRPVCINRSRWDCTLERIGNSDR 792

Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
           + +      +KG+    A  ++ A  +  F S++D   R           E+LV     D
Sbjct: 793 HAVRLGFRQVKGLAVADAARVVAARMNNAFVSVDDMWRRTGVPS------EALVQLAKAD 846

Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEK 917
            F       L SL   ++ A W  K
Sbjct: 847 AF-------LPSLKLARRDALWAIK 864


>gi|56695575|ref|YP_165925.1| DNA polymerase III, alpha subunit, putative [Ruegeria pomeroyi DSS-3]
 gi|71151839|sp|Q5LVN0|DNAE2_SILPO RecName: Full=Error-prone DNA polymerase
 gi|56677312|gb|AAV93978.1| DNA polymerase III, alpha subunit, putative [Ruegeria pomeroyi DSS-3]
          Length = 1101

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 285/1048 (27%), Positives = 475/1048 (45%), Gaps = 102/1048 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSALEFSQKAC 63
            ++  L V ++++ L GA     ++ + A     AIAITD N+L      ++AL+  ++  
Sbjct: 2    TYAELCVTTNFTFLTGASHPEEMITRAAELGLHAIAITDRNSLAGVVRAYAALKELRREA 61

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE---------------- 107
               I+  I  Q  ID     ++ +      P  P +  L++                   
Sbjct: 62   DEAIR--IRSQHRIDSCSRQEVGHPQPIARPEAPRLPRLITGCRLVLRDSPLHWIALPRD 119

Query: 108  --GYQRLIELVSRMYLLDQGKQSVRICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNS 163
               YQRL    +R+  L + +     C   L ++  G  G+I++     G +D A     
Sbjct: 120  RAAYQRL----TRLLTLGKRRAEKGDCHLDLADLLAGCTGMILIAL-PQGRLDGAL---- 170

Query: 164  SQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
                   L   ++ F   +++    R+ G D+   +   +LA     P+VA  ++L    
Sbjct: 171  -----PHLQQVQRRFPGHVFLGAAPRYDGSDQAWLAACARLALRSSAPMVAVGDALMHRA 225

Query: 223  EDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
               +  DVL  +  H T+     R     +  LK  ++M  +F D P AL  T++IA RC
Sbjct: 226  NRRQLADVLTCMREHITIDRIGTRALPNAERRLKGHADMARLFRDHPAALRRTLDIAARC 285

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK--GYHAQDYRQ 339
            SF L   +   P       D++ + E  + R      LE   A+G + +  G   Q   +
Sbjct: 286  SFCLSELSYEYP-------DEVAEGETPQAR------LERLTAEGIVRRYPGGAPQRVHE 332

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
             +  EL ++A + F  YFL V D +Q+A+   I +  GRGS A S+  Y L ITD+ P +
Sbjct: 333  LVAKELKLVAELGFPAYFLTVHDIVQFARSQGI-LCQGRGSAANSILCYLLGITDVSPDQ 391

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
             +++FERF++  R   PD D+DF  +RR+EVI+++  +YG  R     T    +++AA+R
Sbjct: 392  IAMVFERFISKYRGEPPDIDVDFEHERREEVIQWIYQRYGRHRAGLCATVIHFRSRAAIR 451

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL- 518
            +VG+ + +       L   I             AD  R RE  L DP  DR L ++ +L 
Sbjct: 452  EVGKVMGLSQDVTASLSGQIWGQS------NGGADPERMRELGL-DPE-DRRLALTIRLI 503

Query: 519  ---EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
                G  RH S H  G VI    L +L P+      D  + +++   I+  G++K D LG
Sbjct: 504  GEIIGFPRHLSQHVGGFVITRGRLDELAPIENAAMEDRTLIEWDKDDIDTLGILKVDVLG 563

Query: 576  LKTLTLLQKSLDFL---AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            L  LT ++K+ D +    QR + +D   +P +D  TY +L     +G+FQ+ES      L
Sbjct: 564  LGMLTCIRKAFDLMREHEQRHLSID--TVPQEDAATYDMLCAADAVGVFQVESRAQMNFL 621

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
              M+P    D++  V++ RPGPI   +V  Y  R+ G EK     P +  +   T GV +
Sbjct: 622  PRMRPRTFYDLVIEVAIVRPGPIQGGMVQPYIRRRQGLEKAEPFGPELAAVTARTLGVPL 681

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +QEQ +QIA + +GY+  EAD LRR++   +    +   ++ FI+G  +NG S+ +A   
Sbjct: 682  FQEQALQIAVVGAGYTAEEADHLRRSLASFRRMGTIGAHRDTFIAGMRRNGYSQEVAERC 741

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            F  +  FADYGF +SHAAA+A+++Y +AW+K H+P  F  A +  +        +  +DA
Sbjct: 742  FGQIEGFADYGFPESHAAAFAMLAYVSAWLKCHHPAIFACALLNAQPMGFYAPAQIVRDA 801

Query: 810  RQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            R   +++ P  VN    D ++     G   +      IKG     A  I+ A  +   D 
Sbjct: 802  RDHQVELRPICVNASDWDNRLERRADGALALRLGFRQIKGFREEDAAWIVAARGNGYPDP 861

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
               +        +   VLE L  A A    G  R   L  +  I+  A     N     E
Sbjct: 862  QALWL----RAGVTPAVLERLAEADAFADMGIGRRDALWQVRAIRGQAPLPLFNDPLDGE 917

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
             I  HE      ++TL    +    V      R        HP+++ +P +   G+  ++
Sbjct: 918  II--HEP-----QVTLPAMHLGEEVVEDYVSMR---LTLRAHPMELLRPAI--PGLTPHD 965

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + +A++  + + +  +V+++Q+  T  G
Sbjct: 966  K-LASVAAHRVSVCGLVITRQRPGTASG 992


>gi|221211167|ref|ZP_03584146.1| error-prone DNA polymerase [Burkholderia multivorans CGD1]
 gi|221168528|gb|EEE00996.1| error-prone DNA polymerase [Burkholderia multivorans CGD1]
          Length = 1060

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 259/889 (29%), Positives = 418/889 (47%), Gaps = 63/889 (7%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  L   S++S L GA     ++++        IAITD  +L  A      A AAG+ 
Sbjct: 3   PAYAELFCRSNFSFLHGASHAEELVERAVDLGYRGIAITDECSLAGAPRMHVAARAAGLP 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG   ++   +       G  P P    +VLL    EGY  L EL+S    +   K +
Sbjct: 63  LIIGSYFEVTPDE----APPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMAAPKGT 117

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            ++    L     E   +        I    +   + V + ++  F+  FG+R  + L Q
Sbjct: 118 YKLTPRMLSRPPEEFAHLRGMPDCFAILVPVYPVRADVLDAQVAWFRATFGERARLGLVQ 177

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D  +  ++        + +VA  +            DV+ A+     VS+     
Sbjct: 178 LQRALDGPQREEIRAAGARRGVRVVALGDVTMHKRSCKPLQDVMTAIRLGMPVSECGYA- 236

Query: 248 VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           + P  + +L++R+ + ++FS          EIA+ C+ +   H  +     E   + + +
Sbjct: 237 LAPNAEQHLRSRARIATLFS--------ADEIAQTCAILDACHFSLKELEYEYPLELVPR 288

Query: 306 --EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                + LR +  AG+  R   G   K        +++  EL +IA++ +  +FL V D 
Sbjct: 289 GHTPTSYLRQETWAGVARRYWNGVPEK------VAKQIRHELALIAKLNYEPFFLTVYDI 342

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           +++A+  NI +  GRGS A SV  Y L IT+++P + ++LFERF++ +R   PD D+DF 
Sbjct: 343 VKFARSQNI-LCQGRGSAANSVVCYCLGITEVNPEQSTMLFERFISVERGERPDIDVDFE 401

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             RR+EVI+++  KYG +R A      + + +  LR+VG+AL +    VDR+ K      
Sbjct: 402 HQRREEVIQHIYKKYGKDRAALAAAVSTYRPRGVLREVGKALGVDPMLVDRVAK------ 455

Query: 484 AHPVSLQAIADDSR-----FREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            H        D SR     F    L    P +    E++ +L    RH S H+ G VI  
Sbjct: 456 GH-----RWFDGSRDLLQQFEMVGLDPVTPLIRTWAELAARLLNFPRHLSQHSGGFVISR 510

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVK 595
             L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ D   A RG  
Sbjct: 511 GKLTRLVPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMRTAWRGPA 570

Query: 596 VD-----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            D     L  IP +D  TY ++    T+G+FQ+ES      L  +QP    D++  V++ 
Sbjct: 571 ADGKPFTLKHIPQEDKATYDMICRADTVGVFQIESRAQMSMLPRLQPRTYYDLVIEVAIV 630

Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
           RPGPI    V  Y  R+ G EKI      + P L+ T GV I+QEQVMQIA + +G++  
Sbjct: 631 RPGPIQGGAVHPYLRRRQGLEKISYPKDDLKPALERTMGVPIFQEQVMQIAMIAAGFTAG 690

Query: 709 EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
           EAD LRRAM   K K ++ K  ++ ++G  + G ++  A  IFE +  F +YGF +SHAA
Sbjct: 691 EADGLRRAMAAWKRKGDLGKYHDQIVNGMLERGYTREFAEQIFEQIKGFGEYGFPESHAA 750

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT---- 823
           ++A ++Y ++W+K H P  F+AA +  +        +  QDAR+  + + P  V      
Sbjct: 751 SFAKLAYASSWLKCHEPAIFVAALLNSQPMGFYAPAQLVQDARRHGVTVFPVDVTKSNWE 810

Query: 824 ------PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
                 P      GD  +   L+ ++G G   AR I  A A  PF++++
Sbjct: 811 TSLEALPGATPPEGDPAVRLGLSLVRGFGEAAARRIEAARAAGPFENVD 859


>gi|84514485|ref|ZP_01001849.1| DNA polymerase III subunit alpha [Loktanella vestfoldensis SKA53]
 gi|84511536|gb|EAQ07989.1| DNA polymerase III subunit alpha [Loktanella vestfoldensis SKA53]
          Length = 1101

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 277/1029 (26%), Positives = 459/1029 (44%), Gaps = 86/1029 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L V + +S L GA    ++     +     I   D N +   +     A  AGI P+
Sbjct: 26   FVELGVATCFSFLRGASDAVDLAVTAHSLGYDKIGCADLNTMAGVVRLHAAALKAGITPV 85

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK--QS 128
            IGC+L +       ++ +    +P              Y RL  L+S+  + D G   Q+
Sbjct: 86   IGCRLQL-------VSGEAFLAYP---------RDRASYGRLCALLSKGKMRDAGGGWQA 129

Query: 129  VRICLSWLQEIGTEG----LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
               C   L ++        LI + G      D   F        + L + + +    LY 
Sbjct: 130  KGACDISLDDLAAHAADVQLIAVPG-----TDLRHFAALLPRLVRALPSLRHVAASCLY- 183

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                 RG DR R + +  LA  + L ++ATN+  + + +     DV+  + H T +++  
Sbjct: 184  -----RGDDRARINALDALARRYGLSILATNDVHYHAPDRRPLQDVMTCIRHKTTIAKAG 238

Query: 245  -RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                   + +LK+ ++M  +F+D P A+  T ++A   +F L+  A   P     E    
Sbjct: 239  FLLDANAERHLKSPAQMARLFADWPHAIRATRDVADASTFDLRDLAYEYPHETVPEGRSP 298

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            Q+  E EL  K   G   R   G  A        +  L  EL +IA++    YFL + + 
Sbjct: 299  QEYLE-ELTWK---GAAARYPDGVPAA------LQATLRKELALIAKLDIPQYFLTIHEI 348

Query: 364  IQWAKKNNIP--VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            I +A+    P  +  GRGS A S   Y L IT +DP +  LLFERF++ +R   PD D+D
Sbjct: 349  IDFARNQCKPPILCQGRGSAANSAVCYVLGITAVDPAKNDLLFERFISEERKEPPDIDVD 408

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EVI+++ NKYG  R A   T    + + A+R+VGR + +       L K I  
Sbjct: 409  FEHERREEVIQHIYNKYGRNRAALCATVIHYRPRMAVREVGRVMGLSEDVTTALAKTIWG 468

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +     A+        L DP + R + ++ ++ G+ RH   H  G ++ ++ L++
Sbjct: 469  SWGREIGAAQAAEAG----IDLRDPLMARTIRLADQMIGMPRHLGQHVGGFILTEKALTE 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600
             VP+      D    +++   I++  ++K D L L  LT ++K+ D + A  G + DL+ 
Sbjct: 525  TVPIGNGAMPDRSFIEWDKDDIDELRILKVDVLALGMLTCIRKAFDLIAAHHGKRFDLAT 584

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P +D   Y +L    +LG FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 585  VPQEDPAVYDMLCKGDSLGTFQVESRAQMNMLPRLKPRAFYDLVIQVAIVRPGPIQGDMV 644

Query: 659  VVYNNRKNGKEKI--VSIHPLIDP-----MLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
              Y  R++G E +   S  P  DP     +L  T GV I+QEQ M+IA + + +S  EA+
Sbjct: 645  HPYLRRRSGAEVVEYPSPGPQYDPDELKKVLGRTLGVPIFQEQAMKIAMVAAEFSTKEAN 704

Query: 712  VLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LR+AM   +    +   +E+ +    + G     A   F  +  F DYGF +SHAA++A
Sbjct: 705  ELRKAMATFRSHGTIGALEEKMVGRMIRRGYDPAFAARCFNQIKGFGDYGFPESHAASFA 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--- 827
            ++ Y ++W+K HYP  F AA +  +        +  +DAR+  + +    VN    D   
Sbjct: 765  LLVYISSWIKCHYPDVFCAALLNSQPMGFYAPAQIVRDAREHGVIVRAADVNYSDWDNSL 824

Query: 828  --FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                 G   +   L  I G+    A+ IM+A   +PFD L+D  +R    KL+   ++ L
Sbjct: 825  EPLAPGVFAVRLGLRQIDGMRRDMAQRIMDARG-RPFDDLKDMKTRA---KLDAGTVQRL 880

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN-RTNKHENIFAHEKGTFSD-KITLEKF 943
              A AL      R Q L           W  +  R      +FA  +   ++ +  L + 
Sbjct: 881  AAADALRSMMLDRRQAL-----------WDARALRDAPDLPLFADTRDEGAEVRFDLPQM 929

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
             V    V    + + L      HPL   +  + + G +   E      G  ++LA +V+ 
Sbjct: 930  PVCEQVV---ADYQTLRLSLKAHPLAFLRRSMTRQGYRAAAELAQMRSGQPVKLAGVVLI 986

Query: 1004 KQQKKTRKG 1012
            +Q+  + KG
Sbjct: 987  RQRPGSAKG 995


>gi|254507615|ref|ZP_05119748.1| putative DNA polymerase III alpha subunit subfamily [Vibrio
           parahaemolyticus 16]
 gi|219549502|gb|EED26494.1| putative DNA polymerase III alpha subunit subfamily [Vibrio
           parahaemolyticus 16]
          Length = 1023

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 235/744 (31%), Positives = 374/744 (50%), Gaps = 47/744 (6%)

Query: 181 RLYVNLQRHRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
           RL++ +QRH   D   E Q +Q    LA    LP+ A    L  +        VL A+  
Sbjct: 145 RLWIGIQRHLSSD---EKQYLQHCERLAQELALPITACGGVLMHTATRLPLQHVLTAIQL 201

Query: 237 STVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI---LQVHAPIL 292
              V       +T  +  L+++ ++  +F   PE LE +V IA+RC F    LQ   P  
Sbjct: 202 GKSVDNIGSHLLTNTERTLRSKEKLSKLFK--PEWLEESVHIAKRCKFSMGELQYQYP-- 257

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
                 E     +   + LR     G ++R  +G  A   H ++    +D EL++I  + 
Sbjct: 258 -----SELVPNGESPNSYLRKLVEHGKKLRFPEGVPA---HVEE---TIDKELDLIEELN 306

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           +  YFL + D + +AK+N I +  GRGS A SV  Y L IT +DP + S+LFERF++ +R
Sbjct: 307 YPFYFLTINDIVMFAKRNRI-LYQGRGSAANSVVCYCLEITSVDPRQISVLFERFISKER 365

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
              PD D+DF  +RR+EVI+Y+  KYG ER A   T  + + K+A+RDVG+AL +  SQ+
Sbjct: 366 NEPPDIDVDFEHERREEVIQYIYQKYGRERAALAATVITYRFKSAVRDVGKALGIEESQL 425

Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
           D   K + N     +  QA   +   +   L     ++ + +  ++ G  RH S H  G 
Sbjct: 426 DYFIKNV-NRRDRSLGWQAQIVELGLQPGSLKG---EQFIALVNEIMGFPRHLSQHVGGF 481

Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
           VI   PL QLVP+      D  V Q++   +E   L+K D L L  L+ ++K  D++ + 
Sbjct: 482 VIAAGPLHQLVPVENASMPDRTVIQWDKDDLESLKLLKVDVLSLGMLSAIRKCFDWVKKL 541

Query: 593 GVKVDLSLIPF----DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             + +LS+       DD   Y ++    T+G+FQ+ES      L  ++P C  D++  ++
Sbjct: 542 HNQ-ELSIAEITRRQDDPNVYRMIQQADTVGVFQIESRAQMSMLPRLKPACYYDLVIQIA 600

Query: 649 LYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
           + RPGPI   +V+    R++G E I      ++ +L  T GV I+QEQV+++A + +G+S
Sbjct: 601 IVRPGPIQGDMVHPFLKRRDGIEPITYPSKEVEEVLSRTMGVPIFQEQVIKLAMVAAGFS 660

Query: 707 LSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
             EAD LRRAM   K   ++ K K + I G    G     A  IF+ +  F +YGF +SH
Sbjct: 661 GGEADSLRRAMAAWKKNGDLIKFKTKLIEGMLSRGYELEFAERIFDQILGFGEYGFPESH 720

Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
           +A++AV++Y +AW+K +YP  F  + +           +  QDA++ N+ I+P  VN   
Sbjct: 721 SASFAVLAYCSAWLKHYYPEAFYTSILNSLPMGFYSASQLVQDAKRHNVMILPVCVNQSL 780

Query: 826 VDFKV---GDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
            D +V   GD   I   L  IKG    ++  +++A   + F+      +++    LNRR 
Sbjct: 781 HDHQVVKCGDKFAIRLGLRQIKGFSIESSHQLIKARGKQGFNH----PNQLKHIGLNRRD 836

Query: 882 LESLVFAGALDCFGYSRMQLLQSL 905
           +E L  A A+     +R Q   S+
Sbjct: 837 IELLASANAMQSIANNRYQTRWSM 860


>gi|254476960|ref|ZP_05090346.1| DNA polymerase III, alpha subunit subfamily, putative [Ruegeria sp.
            R11]
 gi|214031203|gb|EEB72038.1| DNA polymerase III, alpha subunit subfamily, putative [Ruegeria sp.
            R11]
          Length = 1123

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 283/1041 (27%), Positives = 477/1041 (45%), Gaps = 102/1041 (9%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            +SP +V   + S +S L  A    ++     A    ++ I D N L   +    KA  A 
Sbjct: 35   RSP-YVEFGLASCFSFLHAASDAVDLTATAHALGYDSLGIADRNTLAGVVRLFTKARTAC 93

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR--MYLLD- 123
            I+P+IG +L +    +L    Q +                  Y RL  L+SR  M   D 
Sbjct: 94   IRPMIGARLILMCGCDLLAYPQDRA----------------AYGRLSSLLSRGKMQTADG 137

Query: 124  --QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
              Q K +  + L  L+E   +GL ++      P D A   +        L   + +    
Sbjct: 138  NWQDKGATHLTLDMLRE-HADGLHLIL---MPPDDHATTLHQLARLLPVLPQMRHIAARY 193

Query: 182  LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            LY      RG DR R +++ +LA  H L L+ATN+ L+   +     DV+  + + T ++
Sbjct: 194  LY------RGDDRARINRLDRLARQHGLMLLATNDVLYHRPDRRPLQDVMTCIRNGTTIA 247

Query: 242  QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            +         + +LK+  EM  +F+D P A+  T ++A   +F L               
Sbjct: 248  KAGYLLEANAERHLKSPEEMCRLFADWPHAIRATRKLADDITFQLS-------------- 293

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQ----GAIAKGYHA---QDYRQRLDFELNVIARMKF 353
             D++ E  +E+  +    LE RL Q    GA  + Y A    D R  ++ E ++I R   
Sbjct: 294  -DLKYEYPHEIVPQGQQPLE-RLQQLTWEGAKER-YPAGVPTDVRLLIEKEFDLIDRKGI 350

Query: 354  SGYFLIVADFIQWAKKNNIP--VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            + YFL + D +++A+++  P  +  GRGS A S   Y L IT +DP +  +LFERFL+  
Sbjct: 351  ARYFLTIHDIVRFAREDAEPPILCQGRGSAANSAVCYCLGITAVDPSQTDVLFERFLSEA 410

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+DF  +RR+EVI+Y+  KYG  R     T    + ++A+R+VG+A+ +    
Sbjct: 411  RDEPPDIDVDFEHERREEVIQYIYQKYGRARAGLCATVIHYRPRSAIREVGKAMGLSEDV 470

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHA 529
              +L   I        S +   DD+R REA   L+DP +  +L++++++ G+ RH S H 
Sbjct: 471  TSKLAGTIWG------SFEGQMDDARAREAGLDLSDPYLRMVLKLAREMIGMPRHLSQHV 524

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G ++ +RPL+++VP+     +D    +++   I+  G+ K D L L  LT + K    L
Sbjct: 525  GGFILTERPLTEIVPIGNGAMADRSFIEWDKDDIDALGIFKVDVLALGMLTCIAKVFGLL 584

Query: 590  -AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             A  G ++D++ +P +D  TY +L    +LG+FQ+ES      L  ++PD   D++  V+
Sbjct: 585  EAHYGRQLDMASVPPEDKATYKMLCEGDSLGVFQVESRAQMAMLPKLRPDTFYDLVIEVA 644

Query: 649  LYRPGPI--DNIVVYNNRKNGKEKIVSIHP-------LIDPMLKETQGVIIYQEQVMQIA 699
            + RPGPI  D +  Y  R+   E +    P        ++ +L  T GV I+QEQ M+IA
Sbjct: 645  IVRPGPIQGDMVHPYLRRRQKLEPVDYPRPGPEYPQDEMERILHRTMGVPIFQEQAMKIA 704

Query: 700  QLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
               + +S  E++ LR+AM   + +  ++  +++ +      G     A   F+ +  F +
Sbjct: 705  MDAALFSPEESNALRKAMATFRSRGTIETLQDKMVGRMVARGYDPDFAQRCFDQIKGFGE 764

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGF +SHAA++A + Y ++WMK HYP  F    +  +        +  +DAR   +++  
Sbjct: 765  YGFPESHAASFAKLVYVSSWMKCHYPAAFACGLLNSQPMGFYAPAQIVRDARDHGVEVRA 824

Query: 819  PSVNTPCVDFKVGDNRIYYSL----AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
              VN    D  +      ++L      + G+    A+ IM A+ D PF  + D  SR   
Sbjct: 825  VDVNYSDWDCTLEPTDRGFALRLGMRQVDGMRMDAAQRIM-AARDSPFADVADLKSRC-- 881

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLL---QSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
             +L+   L  L  A AL   G  R   L   Q+L +      +       +H    AH  
Sbjct: 882  -RLDAGSLRRLAAADALRSMGMDRRAALWQTQALKDAPSLPIF-------EHAETAAH-- 931

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
            GT   ++ L         V    + + L      HP+  ++  L        ++   +  
Sbjct: 932  GT-EPEVHLPAMPRAEHVV---ADYQTLRLSLKAHPMQFFRASLHAQRFHRAQDLKGSHH 987

Query: 992  GNNIRLAAMVVSKQQKKTRKG 1012
            G  + LA +V+ +Q+  + KG
Sbjct: 988  GQRVSLAGLVLVRQKPGSAKG 1008


>gi|258539578|ref|YP_003174077.1| DNA polymerase III subunit alpha [Lactobacillus rhamnosus Lc 705]
 gi|257151254|emb|CAR90226.1| DNA polymerase III, alpha subunit [Lactobacillus rhamnosus Lc 705]
          Length = 636

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 221/654 (33%), Positives = 340/654 (51%), Gaps = 57/654 (8%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +F  LQVHS+Y+LL   L+L +++         A+A+TDTN ++  +EF ++A AAG++P
Sbjct: 2   TFTQLQVHSNYTLLHSPLALPDLIQAAKNRGYSAVALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           ++G Q++I                     ++++     GY +L++L +++ L  Q     
Sbjct: 62  LLGMQIEI-----------------ADAKLLVIAENNTGYHQLLKLSTQIMLAQQ----- 99

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
              L++   +   GL  +T   S P   A        A+  L T K      LY+ +   
Sbjct: 100 --PLAFADLLPLNGLAAVTLPDS-PFGVAVSERHEDQAQTFLTTLKAKQPSSLYIGVD-- 154

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              + + E  +   A T +LPL+A  N L+    D     V++A+   + ++ +D P +T
Sbjct: 155 ---EEHLEGTLPAFADTVKLPLLALGNVLYRDPTDAFTQKVMVAIETGSQLNFRD-PVLT 210

Query: 250 P--DHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                +LK  ++    F  + L  A+  T  IA R    +    P LP +   +    Q 
Sbjct: 211 DAGPAWLKPPTDAAKPFVQAGLQAAVTQTEAIAARADVTIDFKQPQLPHYQTPD----QT 266

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVA 361
             ++ L          +LA+  +AK +H Q     Y+ RL +EL VI  M F+ YFL+V 
Sbjct: 267 PSKDYL---------TKLAESGLAKRFHGQSIPPAYQDRLQYELRVIIEMGFADYFLVVW 317

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D + +A K NI  G GRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D+D
Sbjct: 318 DVMNYAHKVNIMPGAGRGSAAGSLVSYALAITEVDPIEYNLLFERFLNPARAQMPDIDLD 377

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
              +RR E+I+YV +KYG   +AQIITFG+  AK A+RDV R   +   + +   K IPN
Sbjct: 378 IPDNRRGELIQYVHDKYGKNHMAQIITFGTFGAKQAIRDVARVFGLSQFESNTWSKAIPN 437

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLS 540
                + L+   + S+  +  +AD   +R+L + +  LEGL RH STHAAGIV+ + PL+
Sbjct: 438 --LFHIDLKTAYEQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLT 495

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
             V + +     L  TQ     +E  GL+K DFLGLK L +L  +  F+ +  G   D  
Sbjct: 496 DTVAL-QPSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGKPFDPK 554

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            IP DD  T  L     T G+FQ ESSG++  L  ++P   ED++A+ +LYRPG
Sbjct: 555 AIPLDDQPTLALFARGDTNGVFQFESSGIKNVLRKLRPTAFEDVVAVNALYRPG 608


>gi|304310903|ref|YP_003810501.1| Error-prone DNA polymerase [gamma proteobacterium HdN1]
 gi|301796636|emb|CBL44848.1| Error-prone DNA polymerase [gamma proteobacterium HdN1]
          Length = 1075

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 288/1030 (27%), Positives = 461/1030 (44%), Gaps = 121/1030 (11%)

Query: 18   SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDI 77
            S++S L+GA     ++ +  A    AIA+TD  +L   +    +A   GI+ IIG     
Sbjct: 59   SNFSFLKGASHPEELVRQAHAQSYSAIALTDECSLAGVVRALVEAEKCGIKLIIGSYF-- 116

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ---------- 127
                   +  +G       PS +        Y +L   +S      +  Q          
Sbjct: 117  -------VCEEGLRYVALAPSKL-------AYHQLSSYISHARRRSKKGQYEAHTKDLER 162

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             +R CL          LI L        DRA+   S+Q   +  L   +   +RL++ ++
Sbjct: 163  HLRDCL----------LIWLP-------DRAYV-ESTQADTQYFLQISR---ERLWIGIE 201

Query: 188  RHRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +  G+      Q    + LA +  LP+VA    L  S       DVL A+  +T V Q  
Sbjct: 202  Q--GFCAITPEQFTWRMSLANSLHLPIVAVGGVLTHSASRQPVQDVLTAIRLNTTVDQAG 259

Query: 245  -RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               +   + +L+   E+ + F     AL+NTVEIA RC F L+      P     E    
Sbjct: 260  FELQSNRERHLQRLEELQNRFPK--AALQNTVEIANRCLFSLRELRYEYPH----ESVPS 313

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                   LR    +G   R  +G + K       R +L+ EL++IA + +  YFL V D 
Sbjct: 314  NVSPTQYLRAITYSGARQRWPEGILEK------VRAQLEKELHIIAELHYEYYFLTVYDI 367

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +Q+A+   I +  GRGS A S   + L IT++DP    LLFERF++ +R   PD D+DF 
Sbjct: 368  VQFARSRRI-LCQGRGSAANSAVCFCLFITEVDPAIHHLLFERFISKERNEPPDIDVDFE 426

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI---- 479
             +RR+E+I+++  KYG +R A   +  + + K+ALRDV +AL    + +D L +L+    
Sbjct: 427  HERREEIIQFIYQKYGRQRAALTASVITWRLKSALRDVAKALGFDGTLIDPLNRLLTWWD 486

Query: 480  -PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
             P+  A    L  I  D   R  R       +L+ +   L    RH S H  G +I D  
Sbjct: 487  QPDQLAE--QLMTIGLDYNQRRVR-------QLIYLVNILLRFPRHLSQHTGGFIISDGH 537

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L QLVP+      D  V Q++   IE  GL+K D L L  L+ +++  D LA  RG    
Sbjct: 538  LDQLVPIENASMPDRTVVQWDKDDIETLGLMKIDILALGMLSAIRRCFDLLAPIRGRHWS 597

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ +P +D E Y +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGP+  
Sbjct: 598  MATLPAEDPEVYQMLQQADSIGVFQVESRAQMSMLPRLKPACFYDLVIQVAIVRPGPMQG 657

Query: 658  IVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V+    R+ G E +      ++ +LK T GV I+QEQV+++A L +G+S  EAD LRR
Sbjct: 658  NMVHPFLKRRQGLESVEYPGKEVESVLKRTLGVPIFQEQVIELAMLAAGFSAGEADQLRR 717

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AM   K K E+ + +E+   G    G     A  I E +  F +YGF +SHAA++A++ Y
Sbjct: 718  AMASWKKKGELQRHQEKLHHGLMARGYITEFAERIIEQINGFGEYGFPESHAASFALLVY 777

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK----- 829
             +AW+K H P  F  A +  +        +  QDAR+ N++I   +V+  C  ++     
Sbjct: 778  VSAWLKCHEPAAFCCALLNSQPMGFYSASQLVQDARRHNVEIR--TVDVMCSQWEHSLEP 835

Query: 830  -VGDNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
              G  +  +   L  +K   +   + ++ A   + F S+ D   R     LN++ +++L 
Sbjct: 836  LSGRQQPALRLGLCMLKDFSSIGGQSLLRARKQRAFQSIADLKQRA---FLNQKDMDALA 892

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV- 945
               AL     +R Q           A+W         E++  H      D       SV 
Sbjct: 893  HGNALLTLTGNRHQ-----------ARW---------ESMALHAPTALVDASNESDISVL 932

Query: 946  ---ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                  +     + R LG     HP+ + +        K  +E         +++A +V 
Sbjct: 933  LRAPTEAKDMLEDYRSLGLTLGRHPMALLRNHAALKVCKLQKEVCLLSTRRFVQVAGIVT 992

Query: 1003 SKQQKKTRKG 1012
             +Q+  T KG
Sbjct: 993  CRQRPGTAKG 1002


>gi|78067625|ref|YP_370394.1| error-prone DNA polymerase [Burkholderia sp. 383]
 gi|77968370|gb|ABB09750.1| DNA polymerase III, alpha subunit [Burkholderia sp. 383]
          Length = 1068

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 287/1058 (27%), Positives = 462/1058 (43%), Gaps = 125/1058 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     ++++        IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASHAEELVERAFELGYRGIAITDECSLAGAPRMHVAAKAKGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +IG   D+   +       G  P P    +VLL    EGY  L EL+S           
Sbjct: 69   LVIGSYFDVTPDE----VAPGHDPGPGAFGLVLLAQNREGYGNLSELIS----------- 113

Query: 129  VRICLSWLQEIGTEGLIMLTGG--SSGPIDRAFFFN--------------SSQVAEKRLL 172
                  W +    +G   LT    S+ P + A                   + V + ++ 
Sbjct: 114  ------WRRMAAPKGTYQLTSRMLSAPPAEFAHLRGIPDCFAILVPTYPVRADVLDAQVA 167

Query: 173  TFKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             F+  FG+R  + L Q  R  D  +  ++        + +VA  +         E  DV+
Sbjct: 168  WFRTTFGERARLGLVQLQRALDGAQREEIRAAGERRGVRIVALGDVTMHRRSCKELQDVM 227

Query: 232  MAVAHSTVVSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSF---ILQ 286
             A+     VS+     + P  + +L+ R+ + +++S  P  +E T  I   C F    L+
Sbjct: 228  TAIRVGMPVSECGY-ALAPNAEQHLRGRNRIGNLYS--PAEIEETCTILDTCDFKLDTLR 284

Query: 287  VHAP--ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
               P  I+P+ +            + L  + +AG   R  QG   K        +++ +E
Sbjct: 285  YEYPDEIVPKGLTPT---------SYLEQETMAGAATRYPQGVPEK------VSKQIRYE 329

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L++IA++ +  +FL V D +++A+  NI +  GRGS A SV  + L IT+++P + ++LF
Sbjct: 330  LDLIAQLSYEPFFLTVYDIVKYARSQNI-LCQGRGSAANSVVCFCLGITEVNPEQSTMLF 388

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERF++ +R   PD D+DF   RR+EVI+++  KYGH R A      + + +  LR+ G+A
Sbjct: 389  ERFISAERGEPPDIDVDFEHQRREEVIQHIYEKYGHNRAALAAAVSTYRPRGVLRETGKA 448

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR-----FREARLADPSVDRLL---EISQ 516
            L +    VDR+ K      AH        D SR     F    L DP    +L    ++ 
Sbjct: 449  LGVDPMLVDRVAK------AH-----RWFDGSRDLLQQFSTIGL-DPETPLILAWARLAA 496

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            +L    RH S H+ G VI    L++LVP+         V Q++   +E  GL+K D L L
Sbjct: 497  RLLNFPRHLSQHSGGFVISRGKLTRLVPVENAAMDGRRVIQWDKDDLEALGLMKVDVLAL 556

Query: 577  KTLTLLQKSLDF-LAQRGV------KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
              L+ L ++ D   A RG          L  IP DD  TY ++    T+G+FQ+ES    
Sbjct: 557  GMLSALHRAFDMRTAWRGPPEPDGEPFTLKHIPQDDKATYDMICRADTVGVFQIESRAQM 616

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQG 687
              L  ++P    D++  V++ RPGPI    V  Y  R+ G EK+      + P L+ T G
Sbjct: 617  SMLPRLRPQTYYDLVIEVAIVRPGPIQGGAVHPYLKRRQGIEKVSYPKEELKPALERTYG 676

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIA 746
            V I+QEQVMQIA + +G++  EAD LRRAM   K K  +++   + + G  +       A
Sbjct: 677  VPIFQEQVMQIAMIAAGFTPGEADQLRRAMAAWKRKGNLEQYHRKIVDGMRERDYPPDFA 736

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              IFE +  F DYGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  
Sbjct: 737  EQIFEQIKGFGDYGFPESHAASFAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLV 796

Query: 807  QDARQFNIQIMPPSVNTPCVDFKV----------GDNRIYYSLAAIKGVG-TTTARHIME 855
            QDA++  +Q++P  V     D  +          G   +   L+ ++G+G     R    
Sbjct: 797  QDAKRHGVQVLPIDVTQSNWDASLEALPDQPPPHGQPAVRLGLSLVRGLGEAAARRIEAA 856

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRR-VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
             +A  PFD+++    R    +L RR +             G+ R  L Q++         
Sbjct: 857  RTAAGPFDTVDTLARRA---QLERRDLEALAAANALATLAGHRRDALWQAVA-------- 905

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
                      ++ A      ++K  L   S  +  +    +    G     HP+ + +P 
Sbjct: 906  -----AAPERDLLATAPIDEAEKPALGAPSEADDIL---ADYHTTGLTLDRHPVALLRPE 957

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            LR   +    E      G   R   +V ++Q   T KG
Sbjct: 958  LRARRLSSAAELHDRPDGRLARACGLVTARQMPGTAKG 995


>gi|332041001|gb|EGI77369.1| DNA polymerase III, alpha subunit [Hylemonella gracilis ATCC 19624]
          Length = 1083

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 287/1043 (27%), Positives = 465/1043 (44%), Gaps = 95/1043 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S++S   GA S   ++ +  A    A+AITD  ++   +    +A   G+ 
Sbjct: 24   PAYAELHCLSNFSFQRGASSAEELVARAHALGYSALAITDECSMAGVVRAHVEAQKLGLS 83

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS--RMYLL---- 122
             +IG +L +++ D    T            +VLL  +  GY +L EL++  R + +    
Sbjct: 84   LLIGTELRVNVDDQTHFT------------LVLLARSRVGYGQLCELITQARGHTVTARE 131

Query: 123  -DQGKQSVRICLSWLQEIGT-EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
             ++G +  +    W  E+   E L +L     G    A  F +   A+ + L  +  F  
Sbjct: 132  RERGLRYQQRMDGWPLELDRHELLALLVPQRDGLQPEAPGFAARLDAQLQWLRAR--FAP 189

Query: 181  RLYVNLQRHRGYDRYRESQVVQLAYTH-ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              ++ ++   G D  R  + +Q A     +PLVA               DV+ A+     
Sbjct: 190  HGWLAVELLHGLDDERWLRELQAAGARCGVPLVAAGGVHMHVRSRKPLQDVMTAIRLGRP 249

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            V++     + P+     RS            L  TV +A  C F L       P    +E
Sbjct: 250  VAECGF-ELQPNAEAHLRSRQRLAALYPAALLAETVRLAGLCHFSLDELKYEYP----EE 304

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 +   + LR   + G + R  QG           R++++ EL +I+ +++  YFL 
Sbjct: 305  VVPAGETPASYLRRATLEGAQTRYPQGVPTA------VRRQIEHELALISELRYEKYFLT 358

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D ++ A+   I +  GRGS A SV  Y L +T++DP R S+LFERF++ +R   PD D
Sbjct: 359  VYDIVRHARDEKI-LCQGRGSAANSVVCYCLGVTEVDPARTSVLFERFISKERNEPPDID 417

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF   RR+EVI+Y+  KYG  R A      +  A+ A+RDVG+AL +    +D L K  
Sbjct: 418  VDFEHQRREEVIQYLYTKYGRGRAALTAAVHTYHARGAIRDVGKALGLDEDLIDALAK-- 475

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVD-------RLLEISQKLEGLYRHASTHAAGI 532
                AH        D       RL+   V+        LLE+++ L G  RH S H+ G 
Sbjct: 476  ----AH-----QWWDGREVNRERLSALGVEVDSRPIRLLLELTRPLLGFPRHLSQHSGGF 526

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
            V+    L++ VP+           +++   I+  GL+K D L L  L+ ++++LDF++Q 
Sbjct: 527  VLTGDKLTRTVPVVPAAMEGRTTIEWDKDDIDALGLLKVDVLALGMLSAIRRTLDFVSQW 586

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            RG    L  IP +D +TY ++     +G+FQ+ES      L  ++P C  D++  V++ R
Sbjct: 587  RGRPFRLQDIPPEDPQTYEMICRADVVGVFQIESRAQMSMLPRLRPRCFYDLVIEVAIVR 646

Query: 652  PGPIDNIVVY-----NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            PGPI   +V+       R+   E +   +  + P L  T GV I+QEQVMQIA + +G++
Sbjct: 647  PGPIQGGMVHPFLEQRERQRRGEPLALPNEALRPALARTLGVPIFQEQVMQIAIIAAGFT 706

Query: 707  LSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
              EAD LRRAM   + K  +DK ++R I G +  G  +  A  IF  +  F +YGF +SH
Sbjct: 707  PGEADQLRRAMAAWRRKGGVDKFQQRLIEGMTARGYEREFAEAIFRQIEGFGEYGFPESH 766

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AA++A++ Y +AW+K H P  FLA  +           +  QDA++  + + P  V    
Sbjct: 767  AASFALLVYSSAWLKRHEPAAFLAGLLNSLPMGFYGPSQLVQDAQRHCVTVRPVDVLHSE 826

Query: 826  VDFKVGDNR----------------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
             D  +                    +   L  + G+    A  I+ A A  P  + ED  
Sbjct: 827  WDCTLEREEGYEGDEGEHRPATRAAVRLGLRLVAGLKQERAHRIVAARAQGPLLNTEDLA 886

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             R     L+   L +L  A AL   G S  +  Q  D    +A          HE   A 
Sbjct: 887  LRAGLDALD---LNALASADAL--MGLSGHRRQQVWDASALHAAPALLRGAPVHEPTLAL 941

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
                  ++I  +  +              LG     HPL + +P L ++G++  ++ +A 
Sbjct: 942  PAAPEGEEIVFDYAA--------------LGLTLRRHPLALLRPRLSRLGVQTAQDLLAW 987

Query: 990  IRGNNIRLAAMVVSKQQKKTRKG 1012
              G   R   +V+++QQ  T KG
Sbjct: 988  PDGRPARACGLVLARQQPGTAKG 1010


>gi|308177546|ref|YP_003916952.1| putative DNA polymerase III subunit alpha [Arthrobacter arilaitensis
            Re117]
 gi|307745009|emb|CBT75981.1| putative DNA polymerase III subunit alpha [Arthrobacter arilaitensis
            Re117]
          Length = 1151

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 302/1100 (27%), Positives = 494/1100 (44%), Gaps = 121/1100 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL V SSYS   G      +     A     +A+TD + L+  ++      A G+ P
Sbjct: 2    SFTHLNVSSSYSAHYGVSHPKQLAQAAKAQGAQMLALTDRDGLYGTVKHVAACMAEGLDP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV---STAEGYQRLIELVSRMYLLDQGK 126
            I+G  L +       +   G T       I+LL        GY  L   ++  +    G 
Sbjct: 62   ILGVNLAV-------LDTHGDTHG----RIILLARGRCNGAGYAALCRAITLAHSTAHGV 110

Query: 127  QSVRI-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
              +RI  L+ L   G   L++L GG S  + RA    S   A   L  +KK  G  L V 
Sbjct: 111  PGLRIEQLAHLAAAGN--LVLLLGGESD-VARAILKGSYTQARALLAGWKKRLGKMLRVE 167

Query: 186  LQRHRGY--DRYRESQVVQLA-YTHE--LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            +  +      RY   +  +L  Y HE  +  V TN   ++  +     D+L +      +
Sbjct: 168  IATYLSSPGSRYSLGEAARLLRYAHERGIKAVLTNAVRYVDPDGAVTADILDSARALHSL 227

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTV--EIARRCSFILQVHA--PILPRFI 296
               D  +     +LK   +M  +  ++ +A E +   ++ R    + +  A  P+     
Sbjct: 228  KNLDSCQPNGQGWLKTPQQMRQLAKEIGQATEKSWAHQLLRETEALAEWAAVDPVADLGW 287

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKF 353
            +K    I + +   LR  A+  L  R+  GA+     A+      +RL  EL VI R+ F
Sbjct: 288  KKPV--IPEAKVIGLRRPAMQELTERV-HGAVPGLLGAEKRSVVEKRLALELGVIDRLDF 344

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
            +GYFL VA+ ++      I V   RGSGA S+  Y L I+ ++PL   L+FERFL+  R 
Sbjct: 345  AGYFLTVAETVKLITGMGIRVA-ARGSGASSLVNYLLGISQVNPLAHDLVFERFLSDTRT 403

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            ++PD DID    RR E+ R + + +G ERV+ +    + +A+ A+RD G AL +   QVD
Sbjct: 404  TLPDIDIDVESARRHEIYREIFSSFGEERVSLMSMQNAYRARGAVRDAGAALGVEQEQVD 463

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREA------------RLADPS-VDRLLEISQKLEG 520
             + K +    A           S FREA            R+ D + +D L++ +++L+ 
Sbjct: 464  EIAKQLWRFSA-----------SSFREALSEKPELAALAERITDDTQLDILIDATERLDR 512

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L RH S H  G+++ D  L    P+ +     L ++QF+   ++  GLIK D LG++  +
Sbjct: 513  LPRHISMHPCGVILSDASLLDRTPV-QPSGIGLQMSQFDKHDMDLMGLIKLDVLGVRMQS 571

Query: 581  LLQKSLD----------------------FLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
             +  +L+                      +++  GV +DL+ +P DD  T+ L+ +  TL
Sbjct: 572  AIAYTLEEIARMHPDKRSAARAGGHVDDSYISATGV-IDLARVPLDDEPTFELIRSTHTL 630

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP 676
            G FQ+ES G R+ +  + P    D+I  +SL+RPGP+ + +V  Y   ++G      +HP
Sbjct: 631  GCFQIESPGQRELVGKLAPREFNDLIIDISLFRPGPMQSNMVKPYLEHRHGFAPAQYLHP 690

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI-SG 735
             + P L ET GV ++ EQV++I  +L+G  L  ADV RR +G   KE      ER++ + 
Sbjct: 691  DLIPALAETHGVTVFHEQVLRILHVLTGCGLGMADVYRRLLGDPEKE---PAVERYVRTE 747

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A+K G ++     ++E+L+ F  +GF K+H AA+AV +Y +AW+K H+P  FLA     E
Sbjct: 748  AAKRGYAQETIDKVWEVLSGFGSFGFCKAHGAAFAVPTYHSAWLKAHHPEAFLAG--IWE 805

Query: 796  MDNVEKIKK-FCQDARQFNIQIMPPSVN------------------TPCVDFKVGDNRI- 835
             D     K+    +AR+  + I+P  +N                   P V   VG  R  
Sbjct: 806  HDPGMYPKRLLVSEARRMGVPILPLDINRSTGHYRVERIFEHAPAAVPAVPRAVGSQRPG 865

Query: 836  -YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y    A + +   + R +    A +P++ L D  +R     L+RR  ++L   G  D  
Sbjct: 866  RYGIRLAFRDIHQMSEREVQRLVAGQPYEHLADVRARAG---LSRRTYQNLAALGVFDSL 922

Query: 895  --GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
              G SR   +    ++  ++    K R    +   A + G         K       VR 
Sbjct: 923  LTGTSRADTIAHTQSM-SHSSLPAKYRPGPGQ--LALDLGRIEHIAETGKQLDPADIVR- 978

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             NE  ++    S H +  Y+  L  + I    E +    G  + +A + V+ Q    R G
Sbjct: 979  -NELDLMHLDASEHLITSYRQRLAHLTITQAAELLHLRNGTEVLVAGVRVATQTPPMRGG 1037

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
             R+ +++  + +   +A FF
Sbjct: 1038 KRVVFISVDDGSGCIDATFF 1057


>gi|33596275|ref|NP_883918.1| error-prone DNA polymerase [Bordetella parapertussis 12822]
 gi|71151815|sp|Q7W9W1|DNAE2_BORPA RecName: Full=Error-prone DNA polymerase
 gi|33566044|emb|CAE36941.1| putative DNA polymerase III alpha chain [Bordetella parapertussis]
          Length = 1052

 Score =  327 bits (839), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 261/905 (28%), Positives = 407/905 (44%), Gaps = 99/905 (10%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L+GA     ++ +       A+A+TD  +L   +    +A    + 
Sbjct: 6   PGYAELHCQSNFSFLQGASHPEELVTRAGELGYAALALTDECSLAGVVRAHVEAREQKLP 65

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG             T Q     P +  + LL    EGY  L EL++    L +G+ +
Sbjct: 66  LIIGS----------SFTLQAGADAPPL-DLTLLAQNREGYGNLAELIT----LGRGRAA 110

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSG-----PIDRAFFFNSSQVAEKRLLTFKKLFG---- 179
                   Q + T   I    G +      P   A       +A +RL    +       
Sbjct: 111 KG------QYLLTPADIEAPAGDNAHLRGMPDCLAILAPPPGLAAERLAEQARWLAAQCP 164

Query: 180 DRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            R ++ L   H   D    + V   A+   LP+VA   +          HD L A+    
Sbjct: 165 GRAWIGLTLLHHCRDDLHRAAVEHAAHASGLPIVALGQAQMHRRSRKPLHDTLAAIRTGR 224

Query: 239 VVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            V Q         + +L++R  + S++    +AL  T+ IARRC+F L            
Sbjct: 225 SVGQCGYDLAANAERHLRSRLRLASLYPA--QALAQTLAIARRCTFSL------------ 270

Query: 298 KECDDIQKEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
              D++Q E  +E           LR +   G   R  +G +     AQ     ++ EL 
Sbjct: 271 ---DELQYEYPDEIVPAGHTPASYLRQQTYLGARQRFPEG-MTPAVAAQ-----VEKELA 321

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
           +I  +++  YFL V D + +A+   I +  GRGS A S   Y L IT +DP R + LFER
Sbjct: 322 LINELRYEAYFLTVYDIVGYARSQGI-LCQGRGSAANSAVCYCLGITAVDPARGNTLFER 380

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           F++ +R   PD D+DF   RR+EVI+Y+  KYG +R A      S + ++ LRD GRAL 
Sbjct: 381 FISKERNEPPDIDVDFEHQRREEVIQYIYEKYGRQRAALTAVVISYRPRSVLRDTGRALG 440

Query: 467 MPYSQVDRLCKLIPNDPAHPV---------SLQAIADDSRFREARLADPSVDRLLEISQK 517
           +    +D + +      AH           SL A   D   R AR       +  E+++ 
Sbjct: 441 VDNGIIDAVAR------AHQWWDGKKEMLRSLAACGLDPASRVAR-------QWAELAET 487

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
           L G  RH S H  G VI    LS+LVP+         V Q++   ++   L+K D L L 
Sbjct: 488 LMGFPRHLSQHPGGFVISRGKLSRLVPIENAAMPGRSVVQWDKDDLDALRLLKVDVLALG 547

Query: 578 TLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            L++L+++L    Q RG  + L  IP DD  TY ++    T+G+FQ+ES      L  ++
Sbjct: 548 MLSVLRRALALAGQRRGRPLALHEIPPDDDATYDMICAADTIGVFQIESRAQMSMLPRLR 607

Query: 637 PDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
           P    D++  V++ RPGPI   +V  Y  R+ G+E I    P +   L  T GV I+QEQ
Sbjct: 608 PRQYYDLVVQVAIVRPGPIQGGMVPPYLRRRQGREDITYPGPAVRKALARTLGVPIFQEQ 667

Query: 695 VMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
           VMQIA   +G++  EAD LRR+M   + K  +DK + + + G      +   A  +F  +
Sbjct: 668 VMQIAVDAAGFTPGEADALRRSMAAWRRKGGVDKFRAQLVGGLLARNYTADFAQALFRQI 727

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             F +YGF +SHAA++A+++Y ++W+K H P  FLAA +  +        +  QDAR+  
Sbjct: 728 EGFGEYGFPESHAASFALLAYASSWLKCHEPEAFLAALLNSQPMGFYAPAQLVQDARRHG 787

Query: 814 IQIMPPSVNTPCVDFKVGDN------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
           ++++P  V     +  + D        +   L  +KG+   +AR I +A   +PF    D
Sbjct: 788 VRVLPADVLYSGWEASLQDAPGAARPAVRLGLNLVKGLREDSARAIEQARVRRPFADTAD 847

Query: 868 FCSRV 872
              R 
Sbjct: 848 MARRA 852


>gi|33602064|ref|NP_889624.1| error-prone DNA polymerase [Bordetella bronchiseptica RB50]
 gi|71151814|sp|Q7WHW8|DNAE2_BORBR RecName: Full=Error-prone DNA polymerase
 gi|33576502|emb|CAE33580.1| putative DNA polymerase III alpha chain [Bordetella bronchiseptica
           RB50]
          Length = 1052

 Score =  327 bits (838), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 261/905 (28%), Positives = 407/905 (44%), Gaps = 99/905 (10%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L+GA     ++ +       A+A+TD  +L   +    +A    + 
Sbjct: 6   PGYAELHCQSNFSFLQGASHPEELVTRAGELGYAALALTDECSLAGVVRAHVEAREQKLP 65

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG             T Q     P +  + LL    EGY  L EL++    L +G+ +
Sbjct: 66  LIIGS----------SFTLQAGADAPPL-DLTLLAQNREGYGNLAELIT----LGRGRAA 110

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSG-----PIDRAFFFNSSQVAEKRLLTFKKLFG---- 179
                   Q + T   I    G +      P   A       +A +RL    +       
Sbjct: 111 KG------QYLLTPADIEAPAGDNAHLRGMPDCLAILAPPPGLAAERLAEQARWLAAQCP 164

Query: 180 DRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            R ++ L   H   D    + V   A+   LP+VA   +          HD L A+    
Sbjct: 165 GRAWIGLTLLHHCRDDLHRAAVEHAAHASGLPIVALGQAQMHRRSRKPLHDTLAAIRTGR 224

Query: 239 VVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            V Q         + +L++R  + S++    +AL  T+ IARRC+F L            
Sbjct: 225 SVGQCGYDLAANAERHLRSRLRLASLYPA--QALAQTLAIARRCTFSL------------ 270

Query: 298 KECDDIQKEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
              D++Q E  +E           LR +   G   R  +G +     AQ     ++ EL 
Sbjct: 271 ---DELQYEYPDEIVPAGHTPASYLRQQTYLGARQRFPEG-MTPAVAAQ-----VEKELA 321

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
           +I  +++  YFL V D + +A+   I +  GRGS A S   Y L IT +DP R + LFER
Sbjct: 322 LINELRYEAYFLTVYDIVGYARSQGI-LCQGRGSAANSAVCYCLGITAVDPARGNTLFER 380

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           F++ +R   PD D+DF   RR+EVI+Y+  KYG +R A      S + ++ LRD GRAL 
Sbjct: 381 FISKERNEPPDIDVDFEHQRREEVIQYIYEKYGRQRAALTAVVISYRPRSVLRDTGRALG 440

Query: 467 MPYSQVDRLCKLIPNDPAHPV---------SLQAIADDSRFREARLADPSVDRLLEISQK 517
           +    +D + +      AH           SL A   D   R AR       +  E+++ 
Sbjct: 441 VDNGIIDAVAR------AHQWWDGKKEMLRSLAACGLDPASRVAR-------QWAELAET 487

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
           L G  RH S H  G VI    LS+LVP+         V Q++   ++   L+K D L L 
Sbjct: 488 LMGFPRHLSQHPGGFVISRGKLSRLVPIENAAMPGRSVVQWDKDDLDALRLLKVDVLALG 547

Query: 578 TLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            L++L+++L    Q RG  + L  IP DD  TY ++    T+G+FQ+ES      L  ++
Sbjct: 548 MLSVLRRALALAGQRRGRPLALHEIPPDDDATYDMICAADTIGVFQIESRAQMSMLPRLR 607

Query: 637 PDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
           P    D++  V++ RPGPI   +V  Y  R+ G+E I    P +   L  T GV I+QEQ
Sbjct: 608 PRQYYDLVVQVAIVRPGPIQGGMVHPYLRRRQGREDITYPGPAVRKALARTLGVPIFQEQ 667

Query: 695 VMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
           VMQIA   +G++  EAD LRR+M   + K  +DK + + + G      +   A  +F  +
Sbjct: 668 VMQIAVDAAGFTPGEADALRRSMAAWRRKGGVDKFRAQLVGGLLARNYTADFAQALFRQI 727

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             F +YGF +SHAA++A+++Y ++W+K H P  FLAA +  +        +  QDAR+  
Sbjct: 728 EGFGEYGFPESHAASFALLAYASSWLKCHEPEAFLAALLNSQPMGFYAPAQLVQDARRHG 787

Query: 814 IQIMPPSVNTPCVDFKVGDN------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
           ++++P  V     +  + D        +   L  +KG+   +AR I +A   +PF    D
Sbjct: 788 VRVLPADVLYSGWEASLQDAPGAARPAVRLGLNLVKGLREDSARAIEQARVRRPFADTAD 847

Query: 868 FCSRV 872
              R 
Sbjct: 848 MARRA 852


>gi|149926945|ref|ZP_01915204.1| DNA polymerase III, alpha subunit [Limnobacter sp. MED105]
 gi|149824497|gb|EDM83715.1| DNA polymerase III, alpha subunit [Limnobacter sp. MED105]
          Length = 1046

 Score =  327 bits (838), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 287/1032 (27%), Positives = 466/1032 (45%), Gaps = 85/1032 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            L+  P F      S++S L+ A     ++ +       AI ITD  +L   +   Q A  
Sbjct: 5    LQALPPFAETLALSNFSFLKSASHAEELVQQAKLLGYSAIGITDECSLAGIVRAHQVAKE 64

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GIQ ++G Q               ++       I L+V    GY  L  L+++      
Sbjct: 65   CGIQLLVGAQFVF-----------ARSSAFAGQRIALIVKNKTGYTHLCRLITQA----- 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF-----NSSQVAEKRLLTF-KKLF 178
                        +   T+G  + T      I             S+     LL++  K F
Sbjct: 109  ------------RSRATKGDYLFTRDDLADIPPGLQLLLVPDERSKENFTALLSWCAKRF 156

Query: 179  GDRLYV--NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-A 235
              RL+V  NLQ HRG+DR     +  LA+ H + L+A+N  +  S E    HDVL A+  
Sbjct: 157  TGRLHVVCNLQ-HRGFDRPWLLYLQALAHLHGVELMASNLPVMHSSERKNLHDVLTAIRL 215

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
            +  +   K          L+   ++   +      L+ TV +A +C F L       PR 
Sbjct: 216  NCKLNDAKPFLETNAQRCLQPLQQLAQTYPH--RLLQQTVTLAAQCVFSLDELRYQYPRE 273

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            I  E      E    LR     G   R +    AK       +++++ EL +I  ++F  
Sbjct: 274  ISPE----GLEPTQYLRQLVEEGAAQRYSSNVPAK------VKKQIEHELQLIEELQFEA 323

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL V D +++A+  NI +  GRGS A SV  Y L IT+++P + ++LFERF++ +R   
Sbjct: 324  YFLTVYDIVRFARSRNI-LCQGRGSAANSVVCYCLHITEVNPDKMAVLFERFISRERNEP 382

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF   RR+EVI+Y+  KYG +R A   +    + ++ALRDVG+AL +    V++L
Sbjct: 383  PDIDVDFEHTRREEVIQYIYQKYGRDRAALAASVVVYRPRSALRDVGKALGLDTDLVEQL 442

Query: 476  CKLIPNDPAHPVS----LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             K      +  +S    +QA  D        +    V   + ++ +L G  RH S H  G
Sbjct: 443  AKSQDGGYSRSMSVDHMIQAGID--------VHQSGVQHCVHLADELLGFPRHLSQHTGG 494

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             VI    L++LVP+      +  V Q++   ++  GL+K D L L  L+ ++ +LD L +
Sbjct: 495  FVIARDSLTELVPVENASMPERSVIQWDKDDLDAMGLMKVDVLALGMLSAIRMTLDELHR 554

Query: 592  R-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            +      L  IP +D+ TY ++    T+G+FQ+ES      L  ++P    D++  V++ 
Sbjct: 555  KPDAPRTLQAIPPEDNATYDMMCKADTVGVFQIESRAQMGMLPRLRPQQYYDLVIQVAIV 614

Query: 651  RPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGPI   +V+    R+ G E +      +   L  T+GV I+QEQVMQ+A L +G+S  
Sbjct: 615  RPGPIQGGMVHPFLKRRQGLEAVNYPSDALKEALGRTEGVPIFQEQVMQVAILAAGFSPG 674

Query: 709  EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EAD LRR M   K K  +    ER ++G  + G ++  A +IF+ +  F +YGF +SHAA
Sbjct: 675  EADALRRGMAAWKRKGGLHHFYERVVNGMLERGYTREFAESIFKQMEGFGEYGFPESHAA 734

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++A++ Y +AW+K H+P  FL   +  +        +  QDA++  + ++P  V    ++
Sbjct: 735  SFAMLVYASAWLKCHHPDAFLCGLLNAQPMGFYAPSQLIQDAQRHGVTVLPVDVQCSSLE 794

Query: 828  FKVGDNR-----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
             ++ +       +   L  + G+    A  I++      F+S+ED   R    +L+R  L
Sbjct: 795  TQLENCTGDFLPVRLGLNRVNGLKHDAALRIVQTREKGLFESVEDLTKRA---RLDRGDL 851

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
             +L  A AL+     R Q +      +        N TN   N  ++E       + L K
Sbjct: 852  LALADANALEKLAGHRRQAVWQTAATETSGIRHNANNTNLLSNTRSNET-----PLELPK 906

Query: 943  FS-VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
             S +E+    +    R  G     HP+   +  L    IK  EE      G   R   +V
Sbjct: 907  ASELEDMLADY----RATGSSLQHHPISFLRKQLAPYKIKQVEELRTYPNGRLARACGIV 962

Query: 1002 VSKQQKKTRKGS 1013
              +Q+  T  G+
Sbjct: 963  THRQRPATAHGT 974


>gi|167617801|ref|ZP_02386432.1| error-prone DNA polymerase [Burkholderia thailandensis Bt4]
          Length = 852

 Score =  327 bits (837), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 249/846 (29%), Positives = 395/846 (46%), Gaps = 77/846 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++        IAITD  +L  A      A    + 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAKKHGYRGIAITDECSLAGAPRMHVAAKGHELP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G   D+   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFDVTPDD----VAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            R+    L     E + +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 124 YRLTPRMLAAPPPEFIHLRGVPDCFAILVPTYPARADVLDAQLAWFGALFGERARLGLVQ 183

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D     QV        + +VA  +    +       D + A+     + +     
Sbjct: 184 LQRALDGAHREQVRAAGERRGMRIVALGDVTMHTRSCKPLQDTMTAIRLGMPIGECGH-A 242

Query: 248 VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           + P  + +L+ R  +  +F    +AL  T  +   C F L               D+++ 
Sbjct: 243 LAPNAEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DELRY 285

Query: 306 EEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
           E  +E           L  +  AG   R   G        +  RQR+ FEL +IA +K+ 
Sbjct: 286 EYPHEIVPAGHTPTSYLAQETWAGARRRYPDGV------PEAVRQRIGFELALIADLKYE 339

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFL V D +++A+  +I +  GRGS A SV  Y L +T+++P + +LLFERF++ +R  
Sbjct: 340 PYFLTVYDIVEYARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFISRERGE 398

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R
Sbjct: 399 PPDIDVDFEHQRREEVIQYLYGKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVER 458

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAST 527
           + K                D SR   AR A    DP V  +    +++ +L    RH S 
Sbjct: 459 VAK-----------EHRWFDGSRALLARFASVGLDPDVPLIRTWAKLAARLLNFPRHLSQ 507

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ D
Sbjct: 508 HSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFD 567

Query: 588 FL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P   
Sbjct: 568 MITAWRGPPLPDGRPFRLEHIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRGY 627

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKN---GKEKIVSIHP--LIDPMLKETQGVIIYQE 693
            D++  VS+ RPGPI    V  Y  R+    G+ +    +P   ++ +L+ T G+ I+QE
Sbjct: 628 YDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEVEGEITYPSEALERVLERTLGIPIFQE 687

Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           QVMQIA + +G++  EAD LRRAM   K K ++ K   R + G  + G S+  A  IFE 
Sbjct: 688 QVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHRRIVDGMLERGYSREFAEQIFEQ 747

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++ 
Sbjct: 748 IKGFGEYGFPESHAASFAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPAQLVQDAKRH 807

Query: 813 NIQIMP 818
            + ++P
Sbjct: 808 GVTVLP 813


>gi|83943312|ref|ZP_00955771.1| DNA polymerase III, alpha subunit, putative [Sulfitobacter sp. EE-36]
 gi|83845544|gb|EAP83422.1| DNA polymerase III, alpha subunit, putative [Sulfitobacter sp. EE-36]
          Length = 1048

 Score =  327 bits (837), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 280/999 (28%), Positives = 456/999 (45%), Gaps = 93/999 (9%)

Query: 43   AIAITDTNNL------FSAL-EFSQKACAAGIQP--IIGCQLDIDMQDNLKMTNQGKTPF 93
            A+AITD N+L      +SAL E  ++  A    P  +IG +L +   D            
Sbjct: 5    ALAITDHNSLAGVVRAYSALKELRRELGADAPLPRLVIGARLILRDSDT----------- 53

Query: 94   PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG 153
                  V L    E Y RL  L      L  GK+       +L       L  L  G +G
Sbjct: 54   ----HWVALPHDREAYARLTRL------LTLGKRRAPKGACYLD------LPDLVQGCAG 97

Query: 154  PIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLV 212
                A    S + ++  ++T KK F   +++ +  R+ G D+        LA+    P+V
Sbjct: 98   MSLIAVPQASLKSSQPDIMTLKKHFPADVFIGVAPRYDGSDQRYFDACATLAHRTAAPMV 157

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            A  + L       +  DVL  + H+  + Q   R     +  LK  ++M  +F+  P AL
Sbjct: 158  AVGDVLMHHGARRQLADVLTCLRHNITIDQIGTRALPNAEKRLKPEADMKRLFARHPAAL 217

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE--ENELRNKAVAGLEVRLAQGAIA 329
              T +IA R SF L   +   P       D+I   E  ++ L   A  GL+VR  +GA A
Sbjct: 218  RRTTQIAARSSFCLSELSYDYP-------DEIADNETPQDRLARLASEGLKVRYPKGAPA 270

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
            +         +++ EL ++  + F  YFL V D +Q+A+   I +  GRGS A S+  Y 
Sbjct: 271  RAI------AQMEKELALVKTLDFPAYFLTVHDIVQFARSKGI-LCQGRGSAANSILCYL 323

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L ITD+ P   +++ ERF++  R   PD D+DF  +RR+EVI+++  KYG  R     T 
Sbjct: 324  LGITDVSPETITMVVERFVSEHRGEPPDIDVDFEHERREEVIQHIYAKYGRHRAGLCATV 383

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLI---PNDPAHPVSLQAIADDSRFREARLADP 506
               +++AA+ +VG+ + +       L   I    N    P  ++ +  D       L+DP
Sbjct: 384  IHFRSRAAISEVGKVMGLSKDVTANLSGQIWGTSNGGPDPERVKQLGLD-------LSDP 436

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
             +   +++  ++ G  RH S H  G VI    L +L P+      D  + +++   I+  
Sbjct: 437  RLALTIKLIGEIIGFPRHLSQHVGGFVITKGRLDELCPIENAAMDDRTIIEWDKDDIDAL 496

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLES 625
             ++K D L L  LT ++KS D +AQ G K   ++ IP DD +TY +L     +G+FQ+ES
Sbjct: 497  NILKVDILSLGMLTCIRKSFDLIAQHGGKKHSIASIPQDDAQTYDMLGVADAIGVFQVES 556

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK 683
                  L  M+P  + D++  V++ RPGPI   +V  Y NR+ G E +V     ++ +L 
Sbjct: 557  RAQMNFLPRMKPRELYDLVIEVAIVRPGPIQGGMVHPYINRRQGNEAVVFPSKELEDVLG 616

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGIS 742
            +T GV ++QEQ MQIA + +G+  SEAD LRR+M   +    + + +++FI+G    G  
Sbjct: 617  KTLGVPLFQEQAMQIAVVAAGFLPSEADQLRRSMATFRRMGTIGQLRDKFINGMLARGYE 676

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
               A N F  +  F +YGF +SHAAA+A+++Y +AW+K H+P  F    +  +       
Sbjct: 677  NAFAENCFSQIEGFGEYGFPESHAAAFAMLAYVSAWLKCHHPAAFACGLLNAQPMGFYAP 736

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEAS 857
             +  +DAR+ +I++ P  VNT   D  +     G   +      IKG     A  I+ A 
Sbjct: 737  AQIVRDAREHHIEVRPVCVNTSEWDNTLEKRSDGSLALRLGFRQIKGFREEDAGWIVAAR 796

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
             +  +   E    R     L+  VLE L  A A    G  R   L ++  I+  A     
Sbjct: 797  GNG-YPDPEALWLRAG---LSPAVLERLAEADAYAVLGLGRRDALWAVKAIKGNAPLPLF 852

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
            N  +K E      +G     +TL    +    V    +   +      HP+++ +P +  
Sbjct: 853  N--DKIEG-----EGIAEQPVTLPAMHLGQEVV---EDYVAMRLSLKAHPMELLRPAM-- 900

Query: 978  MGIKGY----EESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             G+  +    E  +  +    I +  +V+++Q+  T  G
Sbjct: 901  TGLTAHDALPEVPLGPMAQRPISVCGLVITRQRPGTASG 939


>gi|254294846|ref|YP_003060869.1| DNA polymerase III subunit alpha [Hirschia baltica ATCC 49814]
 gi|254043377|gb|ACT60172.1| DNA polymerase III, alpha subunit [Hirschia baltica ATCC 49814]
          Length = 1096

 Score =  327 bits (837), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 282/1049 (26%), Positives = 475/1049 (45%), Gaps = 114/1049 (10%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  L V +++S L GA      + +       AI I D N L   +     A   G+
Sbjct: 10   TPQYAELAVTTNFSFLRGASHAEEFVAQAKNLGLSAIGIADRNTLAGVVRAHVAAKEHGV 69

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + +IG +LD  + D +              S++   +    Y RL       +LL  GK 
Sbjct: 70   RLLIGARLD--LTDGI--------------SLLCYPTDRAAYGRL------SHLLSDGKM 107

Query: 128  SVRI--CLSWLQEIGTEGLIMLTGGSSGPIDRAFF----FNSSQVAEKRLLTFKKLFGD- 180
                  C      I  E +I    G      + F          V E++L    + F   
Sbjct: 108  RAPKGEC-----HISLENVIAYADG------QVFIVIPPMQPDAVFEEKLQILMEKFASS 156

Query: 181  ----------RLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                      ++Y+ L  ++ G +R R +Q+  LA  + LPL+ATNN L+         D
Sbjct: 157  LEGSSPSPDKKIYMALIHQYGGKNRERLAQIAALASKYNLPLIATNNVLYHVSSRRPLQD 216

Query: 230  VLMAV-AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            +L  +  H ++           + +LK+ SEMV +F    EA+E+T +I   C F L   
Sbjct: 217  ILTCIREHVSLEDAGYLLEPNAERHLKSPSEMVRLFHGFKEAIEHTQKIVEACQFSLDEL 276

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                P     E     K  +  L + A  G E R  +G   K       ++ L++EL +I
Sbjct: 277  RYEYP----DEPVPRGKTPQEHLIDIAWKGAEWRYPEGVPEK------VQKSLNYELGLI 326

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
              +  + YFL V D ++WA++  I +  GRGS A S   Y L IT +DP    LLF+RFL
Sbjct: 327  GELHVAQYFLTVHDIVKWAREQEI-LCQGRGSAANSAVCYCLGITSVDPKVNDLLFDRFL 385

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            + +R   PD D+DF  +RR+EVI+YV  +YG  R A   T  S + ++A+R+V +A  + 
Sbjct: 386  SRERKEPPDIDVDFEHERREEVIQYVYERYGRHRAALTATVISYRPRSAVREVCKAFGLS 445

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP---SVDRLLEISQKLEGLYRHA 525
                  L K   N  A+  ++     D +  E+ L DP   ++ R+L  +++L G  RH 
Sbjct: 446  EDVATALAKT--NWGAYGKTI----SDKQAGESGL-DPRNETIQRVLHFTRQLIGFPRHL 498

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            S H  G V+   PL + VP+      +    +++   I+  G++K D L L  L+ ++K 
Sbjct: 499  SQHVGGFVLTQGPLVETVPIGNAAMDERTFIEWDKDDIDALGIMKVDILALGMLSCIRKC 558

Query: 586  LDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
             D L   +G++ +L+ +P DD   Y +L    ++G+FQ+ES      L  ++P    D++
Sbjct: 559  FDMLRLYKGLEYNLATVPQDDPAVYDMLCKADSVGVFQVESRAQMSMLPRLRPRVFYDLV 618

Query: 645  ALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL--------IDPMLKETQGVIIYQEQ 694
              V++ RPGPI  D +  Y  R+   E +    P         ++ +LK T GV ++QEQ
Sbjct: 619  IEVAIVRPGPIQGDMVHPYLRRRKRIETVRYPSPAPEHGPPDELENILKRTLGVPLFQEQ 678

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
             MQ+A   + ++  EA+ LR+AM   +    M   +++FI+G +  G     A   F  +
Sbjct: 679  AMQVAIDAAKFTPDEANGLRKAMATFRRNGTMGLYEDKFINGLTNRGYKPDFAQACFNQV 738

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              F DYGF +SHAA++A++ Y ++W+K H+P  F AA +  +        +  +DAR+ +
Sbjct: 739  KGFGDYGFPESHAASFALLVYVSSWLKCHHPEVFCAAILNSQPMGFYAPAQLVRDAREHD 798

Query: 814  IQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
            +++ PP VN    D  +     G   +   L  I+G+  T  + +M+   D  + + E  
Sbjct: 799  VEVRPPDVNYSDWDSLLEPKEDGTFAVRLGLRQIEGLSETHIQTLMDRRQDG-YYTPEIL 857

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN-IF 927
              R     L R  LE L  A A    G  R + L           W  + +T +  + +F
Sbjct: 858  RQRTG---LPRGALERLAAADAFRSMGLDRREAL-----------WAIRGQTQEAPSELF 903

Query: 928  A----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            A     E+G  ++ + L +  +    ++  +  R+       HP+   +    +MGI+  
Sbjct: 904  ACSATKEQGREAE-VKLPEMPMSEHVIQDYHATRL---SLKAHPVSFLRERYSRMGIRTT 959

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            +E      G+ + +  +V+ +Q+  T  G
Sbjct: 960  KEIYELRSGSRVMVGGVVLVRQRPGTASG 988


>gi|330428421|gb|AEC19755.1| DNA polymerase III alpha subunit [Pusillimonas sp. T7-7]
          Length = 1039

 Score =  327 bits (837), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 254/885 (28%), Positives = 418/885 (47%), Gaps = 53/885 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  L   S++S L+GA     ++ + A     A+A++D  +L   +    +A    I+
Sbjct: 4   PTYAELDCISNFSFLQGASHPEELVQRAAQLGYEALALSDECSLAGVVRAWTEAKKQRIK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            IIG +  +D                    I++L  T  GY  L EL++      D+G+ 
Sbjct: 64  LIIGSRFKLDGMH-----------------IIILARTLNGYGNLSELITLARRSCDKGQY 106

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            + +        G E L  +       I +  +  S    +  +   ++ F  RL++ L 
Sbjct: 107 QLSLQNILAPSSGHEHLAHMP--DCLVIFKPGYGASMSELDTHIPLLQQAFPGRLWLGLS 164

Query: 188 RHRGYDRYRESQVVQLAYTH-ELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQKDR 245
            H  Y   +    +Q A    +L LVAT             HD + A+    TV      
Sbjct: 165 LHHQYADAQHLATLQAAAERFDLKLVATGQVQMHVRSRQPMHDTITAIRLKQTVQDCGYA 224

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +   +HYL+ R  + +I+ +  +AL  T+ ++R C+F L+      P    KE      
Sbjct: 225 LQANAEHYLRGRLRLANIYPE--QALRETLFLSRLCTFELKEIQYQYP----KEITPAGM 278

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + LR +  AG   R  +G  A+       + +L+ EL +IA +++  YFL V + ++
Sbjct: 279 TPSSYLRQETFAGAHRRYPKGVSAQ------LKSQLESELAIIAGLQYEPYFLTVYEIVR 332

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+ ++I +  GRGS A S   Y L IT++DP   + LF RF++  R   PD D+DF   
Sbjct: 333 FARSHDI-LCQGRGSAANSAVCYCLGITEVDPENGNALFARFISQARKEPPDIDVDFEHQ 391

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+++  KYG +R A      + ++++ LRD G+AL +    +D++ K        
Sbjct: 392 RREEVIQHIYKKYGRDRAALTAVVSTYRSRSVLRDTGKALGLDIELIDKVAKSFHYWSGK 451

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              L+ IA+      AR A         +++ L G  RH S H  G VI    L +LVP+
Sbjct: 452 QSLLEKIAEHGLDANARTAQMWAG----LAETLMGFPRHLSQHPGGFVIAHDSLYRLVPI 507

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604
                 +  V Q++   ++  GL+K D L L  L+ LQ+ L  + A+RG    +  I  D
Sbjct: 508 ENAAMPERSVVQWDKDDLDAMGLLKVDILALGMLSALQRCLKLVSARRGQAFAMQNIESD 567

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
           D ET+ ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V  Y 
Sbjct: 568 DAETFAMIQRADTIGVFQIESRAQMSMLPRLKPKVFYDLVVQVAIVRPGPIQGGMVHPYL 627

Query: 663 NRKNGKEKI-VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
            R+ G E    S  P I  +L+ T GV I+QEQ MQIA + + +S  EAD LRR+M   +
Sbjct: 628 RRRQGVEDCDDSPTPEIAKVLERTLGVPIFQEQAMQIAMVAANFSADEADELRRSMAAWR 687

Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            K  +D  ++R I G   NG  +  A +IF  L  F +YGF +SH+A++A ++Y +AW+K
Sbjct: 688 RKGGVDAFRDRLIQGMINNGCPEDFAKSIFRQLEGFGEYGFPESHSASFAKLAYISAWLK 747

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF---KVGDNR--- 834
            H P  FL A +  +        +  QDAR+  + ++P  +     +     +G+++   
Sbjct: 748 CHEPEAFLTALLNSQPMGFYLPNQLVQDARRHQVVVLPSDIMISRWEAGLEPLGNSKRPA 807

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
           +   L  IKG+    A  I  A   + F  ++D   R D   LNR
Sbjct: 808 VRLGLNQIKGLSEAAALRIECARKQQAFSCVQDLAVRAD---LNR 849


>gi|323136507|ref|ZP_08071589.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242]
 gi|322398581|gb|EFY01101.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242]
          Length = 1074

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 290/1063 (27%), Positives = 461/1063 (43%), Gaps = 132/1063 (12%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSALEFSQK 61
            +P +  L   +++S L GA     +     A     I I D N+L      FS L   ++
Sbjct: 3    TPRYAELATTTNFSFLRGASHPEEMAATALALGHSGIGIADRNSLAGVVRAFSYLRAHRE 62

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            +             D  +    ++  +  TP      I+        Y RL  L++R   
Sbjct: 63   SVG-----------DFRLAVGARLVFRDGTP-----DILCYPKDRAAYGRLCRLLTRGNS 106

Query: 122  LDQGKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRL-LTFKKLF 178
              Q K    + L  L E G EG  +I++  G+  P          +    RL L    L+
Sbjct: 107  RTQ-KGDCALFLDDLIEFG-EGQHVILMENGAPPP-------ALMEALHGRLWLAATALY 157

Query: 179  GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            G R            R R +  V+LA T  LPLVA N++     +     D L  +   T
Sbjct: 158  GPR-----------PRARLAGRVELAQTLRLPLVAVNDAHMHVADRRPLADALTCIREKT 206

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             + +         + +LK+  EM  +F   P A+E +        F L   A   P    
Sbjct: 207  TLDEAGFLLSANAERHLKSGEEMARLFRLAPRAVEESARFIDALDFRLTDLAYEYP---- 262

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E  +    E+  L   + AG   R  +GA       QD  + L+ EL ++A +K++ YF
Sbjct: 263  SELREGYASEQEALEALSRAGAMTRYPKGA------PQDVEKLLERELQLVAELKYAAYF 316

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D +++A++  I +  GRGS A SV  + L IT++DP +  LLFERF++ +R   PD
Sbjct: 317  LTVHDIVRFAREQGI-LAQGRGSAANSVICFCLGITEVDPTKHDLLFERFISAERNEPPD 375

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  +RR+EVI+Y+  ++G ER        + + K+A+R++G+A  +    + RL  
Sbjct: 376  IDVDFEHERREEVIQYIYTRFGRERAGLAAAVTTYRGKSAIREIGKAFGLSNDLLGRLSS 435

Query: 478  LIPNDPAHPVSLQAIADDSRFRE-ARLA-DPSVDRL---LEISQKLEGLYRHASTHAAGI 532
                      +    +D SR R+ ARL  D S  R    L ++ ++EG  RH + H+ G 
Sbjct: 436  ---------AAFGRGSDGSRARDIARLGLDASELRFAKALALAAEIEGFPRHLTQHSGGF 486

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI    L ++VP+           +++   ++  GL+K D L L  LT L+K LD LAQ 
Sbjct: 487  VITRDRLDEVVPVSPAAMEGRTTIEWDKDDLDALGLLKIDVLALGMLTCLRKGLDLLAQH 546

Query: 593  -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             G+   LS IP +D   Y +++   T+G+FQ+ES      L  ++P+C  D++  V++ R
Sbjct: 547  YGIVHRLSSIPAEDQRVYAMISRADTVGVFQIESRAQMSMLPRLKPNCFYDLVIEVAIVR 606

Query: 652  PGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGPI  D +  Y  R++GKE +      ++ +L  T GV ++QEQ M+IA + +G++ SE
Sbjct: 607  PGPIQGDMVHPYLRRRSGKEPVSYPSKELEQVLGRTYGVPLFQEQAMRIAIVAAGFTPSE 666

Query: 710  ADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD LRRAM   K    +   +++ I G ++ G ++  A   F  +  F  YGF +SHAA+
Sbjct: 667  ADQLRRAMATFKRAGLIGGFRDKMILGMTRKGYAREFAERCFSQIEGFGTYGFPESHAAS 726

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT----- 823
            +A++ Y +AWMK  YP  F  A +  +        +  +DAR+  I+     +N      
Sbjct: 727  FALLVYASAWMKCRYPDVFACALLNSQPMGFYAPAQIVRDAREHGIETREADINASDWDC 786

Query: 824  -----------PCVDFKVGDNR-------------------IYYSLAAIKGVGTTTARHI 853
                       P     VGD R                   I      IKG+     R +
Sbjct: 787  TLEEKETRTSRPPESRPVGDKRLPLHPHHAEMAGDILGDCAIRLGFRQIKGLAEEDMRRL 846

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            + A   K +DS+ D   R +   L+   L  L  A A    G SR   L +   +     
Sbjct: 847  V-ARRGKGYDSVRDVWLRAE---LSPATLTRLAEADAFASLGLSRRDALWAAAGL----- 897

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
                NR    +++       F+                   + R L     GHP+   +P
Sbjct: 898  ----NRVGDKDDLPLLRDLAFAPLEPDAHLPPMPPGEEVVEDYRFLSLSLKGHPVAFLRP 953

Query: 974  ILRKMGIK----GYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             L +  I     G E       G  + +A +V+ +Q+  T KG
Sbjct: 954  RLARHIIPCEALGRESD-----GRRVTVAGLVLLRQRPGTAKG 991


>gi|163746772|ref|ZP_02154129.1| DNA polymerase III, alpha subunit [Oceanibulbus indolifex HEL-45]
 gi|161379886|gb|EDQ04298.1| DNA polymerase III, alpha subunit [Oceanibulbus indolifex HEL-45]
          Length = 1109

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 274/1040 (26%), Positives = 460/1040 (44%), Gaps = 100/1040 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V   + S +S L  A    ++++        ++ I D N L   +    +A  A I+P+
Sbjct: 25   YVEFGLASCFSFLRAASDAVDLVETAHYHGYDSLGIADHNTLAGVVRLHVEAEKAHIRPL 84

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS--RMYLLD---QG 125
            IG +L +     L    Q +                  Y RL  L+S  +M  +D   Q 
Sbjct: 85   IGARLVLLCGTELLAYPQDRA----------------AYARLSTLLSAGKMQSVDGEWQQ 128

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            K    + L  L +   EGL ++      P +   F        K L   + +    LY  
Sbjct: 129  KGETHLTLEMLAQ-HAEGLHLIV---MPPENLDVFAAGLPRLVKALPGMRHVGASFLY-- 182

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                RG DR R +++  LA    L ++ATN+ L+ +       DV++A+    +V +   
Sbjct: 183  ----RGDDRARINRLDALARAQGLTILATNDVLYHARHRRPLQDVMVAIREGVIVPKAGY 238

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  + +LK+   M  +F+D P A+  T  +A R +F L   A   P  I  E     
Sbjct: 239  LLEANAERHLKSPEAMCRLFADWPHAIAATRRLADRITFKLTDLAYEYPHEIVPE----G 294

Query: 305  KEEENELRNKAVAGLEVRLAQG---AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +    EL      G   R   G   A+ K  H          E  +I   K + YFL + 
Sbjct: 295  RTPMEELSRLTWEGAARRYPDGVPEAVEKTIHK---------EFALIESKKIARYFLTIY 345

Query: 362  DFIQWAKKNNIP--VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            D +++A+++  P  +  GRGS A S   + L IT +DP   +LLFERFL+ +R   PD D
Sbjct: 346  DIVRFARQDAQPPILCQGRGSAANSAVCFCLGITSVDPAVHNLLFERFLSEERDEPPDID 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EVI+Y+  KYG  R     T    + ++A+R+VG+A+ +      +L   I
Sbjct: 406  VDFEHERREEVIQYMYGKYGRHRAGLCATVIHYRPRSAIREVGKAMGLSEDVTSKLAGTI 465

Query: 480  PNDPAHPVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                    S +   DD R REA   L+DP +  +L +++++ G+ RH S H  G ++ +R
Sbjct: 466  WG------SFEGQMDDERTREAGLDLSDPYLRMVLTLAKQMIGMPRHLSQHVGGFILTER 519

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKV 596
            PL+++VP+      +    +++   I+   + K D L L  LT + K  D + A     +
Sbjct: 520  PLTEIVPIGNGAMPERSFIEWDKDDIDALQIFKVDILALGMLTCIAKCFDLIEAHYDRPL 579

Query: 597  DLSLIPFDDHE-------TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            +L+ +P +DHE       TY +L    +LG+FQ+ES      L  ++P    D++  V++
Sbjct: 580  ELATVPVEDHEDDATGRPTYDMLCRGDSLGVFQVESRAQMAMLPKLRPRVFYDLVIEVAI 639

Query: 650  YRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP---------MLKETQGVIIYQEQVMQI 698
             RPGPI  D +  Y  R+ G E +V  +P   P         +L  T GV I+QEQ M+I
Sbjct: 640  VRPGPIQGDMVHPYLRRRQGMESVV--YPAPGPAYPQDELFSILSRTLGVPIFQEQAMKI 697

Query: 699  AQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            +   + +S +EA+ LR+AM   + +  ++K +++ +   +K G     A   F+ +  F 
Sbjct: 698  SIDAAQFSPTEANELRKAMATFRSRGTIEKLQDKMVGRMTKRGYDPVFAQRCFDQIKGFG 757

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            +YGF +SHAA++A + Y ++WMK HYP  F  A +  +        +  +DAR+  +++ 
Sbjct: 758  EYGFPESHAASFAKLVYVSSWMKCHYPAAFACALLNSQPMGFYAPAQIVRDAREHQVEVR 817

Query: 818  PPSVNTP---CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
               VN     C     G+   +   L  + G+    A  IM+   + P+  +ED  +R  
Sbjct: 818  GVDVNLSDWNCTLEPCGEGFALRLGLRMVDGLQEKAAARIMD-RRETPYTDVEDLKTRA- 875

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN-RTNKHENIFAHEKG 932
               L+ + +  L  A  +   G  R Q L           W  +  R      IF H + 
Sbjct: 876  --GLDAKAIRQLAAADTMRSMGIDRRQAL-----------WQSQGLRDAPALPIFDHAEA 922

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                        V   + +   + + L      HP+  Y+  L   G     +      G
Sbjct: 923  ASQGPEPEVTLPVMPKAEQVVADYQTLRLSLKAHPMSFYRSSLAAQGFSSARDLGRMGHG 982

Query: 993  NNIRLAAMVVSKQQKKTRKG 1012
              ++LA +V+ +Q+  + KG
Sbjct: 983  RRVKLAGLVLVRQKPGSAKG 1002


>gi|83954808|ref|ZP_00963486.1| DNA polymerase III, alpha subunit, putative [Sulfitobacter sp.
            NAS-14.1]
 gi|83840534|gb|EAP79706.1| DNA polymerase III, alpha subunit, putative [Sulfitobacter sp.
            NAS-14.1]
          Length = 1048

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 280/999 (28%), Positives = 455/999 (45%), Gaps = 93/999 (9%)

Query: 43   AIAITDTNNL------FSAL-EFSQKACAAGIQP--IIGCQLDIDMQDNLKMTNQGKTPF 93
            A+AITD N+L      +SAL E  ++  A    P  +IG +L +   D            
Sbjct: 5    ALAITDHNSLAGVVRAYSALKELRRELGADAPLPRLVIGARLILRDSDT----------- 53

Query: 94   PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG 153
                  V L    E Y RL  L      L  GK+       +L       L  L  G +G
Sbjct: 54   ----HWVALPHDREAYARLTRL------LTLGKRRAPKGACYLD------LPDLVQGCAG 97

Query: 154  PIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLV 212
                A    S + ++  + T KK F   +++ +  R+ G D+        LA+    P+V
Sbjct: 98   MSLIAVPQASLKASQPDIATLKKHFPADVFIGVAPRYDGSDQRYFDACATLAHRTAAPMV 157

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            A  + L       +  DVL  + H+  + Q   R     +  LK  ++M  +F+  P AL
Sbjct: 158  AVGDVLMHHGARRQLADVLTCLRHNITIDQIGTRALPNAEKRLKPEADMKRLFARHPAAL 217

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE--ENELRNKAVAGLEVRLAQGAIA 329
              T +IA R SF L   +   P       D+I   E  ++ L   A  GL+VR  +GA A
Sbjct: 218  RRTTQIAARSSFCLSELSYDYP-------DEIADNETPQDRLARLASEGLKVRYPKGAPA 270

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
            +         +++ EL ++  + F  YFL V D +Q+A+   I +  GRGS A S+  Y 
Sbjct: 271  RAI------AQMEKELALVKTLDFPAYFLTVHDIVQFARSKGI-LCQGRGSAANSILCYL 323

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L ITD+ P   +++ ERF++  R   PD D+DF  +RR+EVI+++  KYG  R     T 
Sbjct: 324  LGITDVSPETITMVVERFVSEHRGEPPDIDVDFEHERREEVIQHIYAKYGRHRAGLCATV 383

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLI---PNDPAHPVSLQAIADDSRFREARLADP 506
               +++AA+ +VG+ + +       L   I    N    P  ++ +  D       L+DP
Sbjct: 384  IHFRSRAAISEVGKVMGLSKDVTANLSGQIWGTSNGGPDPERVKQLGLD-------LSDP 436

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
             +   +++  ++ G  RH S H  G VI    L +L P+      D  + +++   I+  
Sbjct: 437  RLALTIKLIGEIIGFPRHLSQHVGGFVITKGRLDELCPIENAAMDDRTIIEWDKDDIDAL 496

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
             ++K D L L  LT ++KS D +AQ  G K  ++ IP DD +TY +L     +G+FQ+ES
Sbjct: 497  NILKVDILSLGMLTCIRKSFDLIAQHGGKKYSIASIPQDDAQTYDMLCVADAIGVFQVES 556

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK 683
                  L  M+P  + D++  V++ RPGPI   +V  Y NR+ G E +V     ++ +L 
Sbjct: 557  RAQMNFLPRMKPRELYDLVIEVAIVRPGPIQGGMVHPYINRRQGNEAVVFPSKELENVLG 616

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGIS 742
            +T GV ++QEQ MQIA + +G+  SEAD LRR+M   +    + + +++FI+G    G  
Sbjct: 617  KTLGVPLFQEQAMQIAVVAAGFLPSEADQLRRSMATFRRMGTIGQLRDKFINGMLARGYE 676

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
               A N F  +  F +YGF +SHAAA+A+++Y +AW+K H+P  F    +  +       
Sbjct: 677  NAFAENCFSQIEGFGEYGFPESHAAAFAMLAYVSAWLKCHHPAAFACGLLNAQPMGFYAP 736

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEAS 857
             +  +DAR+ +I++ P  VNT   D  +     G   +      IKG     A  I+ A 
Sbjct: 737  AQIVRDAREHHIEVRPVCVNTSEWDNTLEKRSDGSLALRLGFRQIKGFREEDAGWIVAAR 796

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
             +  +   E    R     L+  VLE L  A A    G  R   L ++  I+  A     
Sbjct: 797  GNG-YPDPEALWLRAG---LSPAVLERLAEADAYAGLGLGRRDALWAVKAIKGNAPLPLF 852

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
            N  +K E      +G     +TL    +    V    +   +      HP+++ +P +  
Sbjct: 853  N--DKIEG-----EGIAEQPVTLPAMHLGQEVV---EDYVAMRLSLKAHPMELLRPAM-- 900

Query: 978  MGIKGY----EESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             G+  +    E  +  +    I +  +V+++Q+  T  G
Sbjct: 901  TGLTAHDALPEVPLGPMAQRPISVCGLVITRQRPGTASG 939


>gi|284159407|ref|YP_441003.3| error-prone DNA polymerase [Burkholderia thailandensis E264]
 gi|83653819|gb|ABC37882.1| DNA polymerase III, alpha subunit superfamily [Burkholderia
           thailandensis E264]
          Length = 1084

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 249/846 (29%), Positives = 395/846 (46%), Gaps = 77/846 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++        IAITD  +L  A      A    + 
Sbjct: 21  PDYAELFCRSNFSFLHGASSAEELVERAKKHGYRGIAITDECSLAGAPRMHVAAKGHELP 80

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G   D+   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 81  LVVGAYFDVTPDD----VAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 135

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            R+    L     E + +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 136 YRLTPRMLAAPPPEFIHLRGVPDCFAILVPTYPARADVLDAQLAWFGALFGERARLGLVQ 195

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D     QV        + +VA  +    +       D + A+     + +     
Sbjct: 196 LQRALDGAHREQVRAAGERRGMRIVALGDVTMHTRSCKPLQDTMTAIRLGMPIGECGHA- 254

Query: 248 VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           + P  + +L+ R  +  +F    +AL  T  +   C F L               D+++ 
Sbjct: 255 LAPNAEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DELRY 297

Query: 306 EEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
           E  +E           L  +  AG   R   G        +  RQR+ FEL +IA +K+ 
Sbjct: 298 EYPHEIVPAGHTPTSYLAQETWAGARRRYPDGV------PEAVRQRIGFELALIADLKYE 351

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFL V D +++A+  +I +  GRGS A SV  Y L +T+++P + +LLFERF++ +R  
Sbjct: 352 PYFLTVYDIVEYARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFISRERGE 410

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R
Sbjct: 411 PPDIDVDFEHQRREEVIQYLYGKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVER 470

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAST 527
           + K                D SR   AR A    DP V  +    +++ +L    RH S 
Sbjct: 471 VAK-----------EHRWFDGSRALLARFASVGLDPDVPLIRTWAKLAARLLNFPRHLSQ 519

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ D
Sbjct: 520 HSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFD 579

Query: 588 FL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P   
Sbjct: 580 MITAWRGPPLPDGRPFRLEHIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRGY 639

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKN---GKEKIVSIHP--LIDPMLKETQGVIIYQE 693
            D++  VS+ RPGPI    V  Y  R+    G+ +    +P   ++ +L+ T G+ I+QE
Sbjct: 640 YDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEVEGEITYPSEALERVLERTLGIPIFQE 699

Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           QVMQIA + +G++  EAD LRRAM   K K ++ K   R + G  + G S+  A  IFE 
Sbjct: 700 QVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHRRIVDGMLERGYSREFAEQIFEQ 759

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++ 
Sbjct: 760 IKGFGEYGFPESHAASFAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPAQLVQDAKRH 819

Query: 813 NIQIMP 818
            + ++P
Sbjct: 820 GVTVLP 825


>gi|126733349|ref|ZP_01749096.1| DNA polymerase III, alpha subunit [Roseobacter sp. CCS2]
 gi|126716215|gb|EBA13079.1| DNA polymerase III, alpha subunit [Roseobacter sp. CCS2]
          Length = 1101

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 281/1040 (27%), Positives = 465/1040 (44%), Gaps = 106/1040 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L V + +S L GA    ++     A     +   D N +   +    +A  A I P
Sbjct: 25   AFVELGVTTCFSFLRGASDAVDLATTANAVGYDKLGCADLNTMAGVVRLHAEALRAQITP 84

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR--MYLLDQGKQ 127
            +IGC+L +       +T +    +P   S          Y RL +L+S+  M+ +D   Q
Sbjct: 85   VIGCRLQL-------ITGEEFLAYPRDRS---------AYGRLTKLLSKGKMHDVDGAWQ 128

Query: 128  SVRICLSWLQEIGTEG----LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +  +C   L ++        LI L G     +D   F       ++ L T K +    LY
Sbjct: 129  AKGVCDMTLDDLAKYSAGVQLIALPG-----VDLDHFSAGLSRLKRALPTLKHIAASYLY 183

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                  RG DR R +Q+  LA  + + ++ATN+  +   +     DV+  + +   + + 
Sbjct: 184  ------RGDDRARINQLDALASANGMSILATNDVHYHVPDRRPLQDVMTCILYKKTIQKA 237

Query: 244  D-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                    + +LK+ ++MV +F++ P A+  T E+A  C+F L   A   P+  E   D 
Sbjct: 238  GFLLDANAERHLKSPAQMVRLFAEWPHAITATREVADACTFKLTELAYEYPK--ETVPDG 295

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               +E   L +    G   R   G           +  L  EL +IA++  + YFL +  
Sbjct: 296  ATPQEY--LEDLTWKGAAWRYPNGVPGS------LKATLRKELALIAKLDIAQYFLTIQQ 347

Query: 363  FIQWAKKNNIP--VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             + +A+    P  +  GRGS A S   Y L IT +DP    LLFERF++ +R   PD D+
Sbjct: 348  VVNFARYECKPPILCQGRGSAANSAVCYVLGITAVDPDTNDLLFERFISEERKEPPDIDV 407

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI+++ +KYG +R A   T    + + A+R+VG+ + +       L K I 
Sbjct: 408  DFEHERREEVIQHIYDKYGRDRAALCATVIHYRPRMAVREVGKVMGLSEDITTALSKTIW 467

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  V  +  A+        L DP + R ++++ ++ G+ RH   H  G ++ ++PL 
Sbjct: 468  GSWGREVGAKEAAEAG----IDLKDPLMARTIKLADQMIGMPRHLGQHVGGFILTEKPLL 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599
            + VP+      +    +++   I++  ++K D L L  LT ++K+ D + A  G K+ L+
Sbjct: 524  ETVPIGNGAMPERSFIEWDKDDIDELRILKVDVLALGMLTCIRKAFDLIEAHYGEKLTLA 583

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DN 657
             I   D  TY +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D 
Sbjct: 584  SIEEGDKPTYDMLCKGDSLGVFQVESRAQMNMLPRLKPREFYDLVIQVAIVRPGPIQGDM 643

Query: 658  IVVYNNRKNGK--EKIVSIHPLIDP-----MLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            +  Y  R+NG+  E+  S  P  DP     +LK T+GV I+QEQ M+IA + + +S  EA
Sbjct: 644  VHPYLRRRNGQEPEEYPSPGPDHDPDELRKVLKRTKGVPIFQEQAMKIAMVAAEFSPDEA 703

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LR+AM   + +  +   +E+ +    + G     A   F  +  F DYGF +SHAA++
Sbjct: 704  NQLRKAMATFRSRGTIGALEEKMVGRMIRRGYDPEFATRCFNQIKGFGDYGFPESHAASF 763

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-- 827
            A + Y ++W+K HYP  F AA +  +        +  +DAR+    +  P VN    D  
Sbjct: 764  AHLVYVSSWIKCHYPDVFCAALLNSQPMGFYAPAQIVRDAREHGKIVRAPDVNYSDWDNT 823

Query: 828  ---FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
                  G   +   L  I GV    A+ I++A   +PFDSL D  +R    +L+   +  
Sbjct: 824  LEPIAPGQFAVRLGLRQIDGVREDMAQRIVDAR-QQPFDSLTDLKTRA---RLDAGTIRK 879

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN-RTNKHENIFAHEKGTFSDKITLEKF 943
            L  A  +      R Q L           W  +  R      +F+  K            
Sbjct: 880  LASADGVRSMTLDRRQAL-----------WDARALRDAPDLPLFSENKD----------- 917

Query: 944  SVENSSVRFENEQ-----RVLGFY------FSGHPLDVYKPILRKMGIKGYEESVATIRG 992
              E + VRF+  Q      V+  Y         HP+   +  + K G            G
Sbjct: 918  --EGAEVRFDLPQMPICEHVVADYETTRLSLKAHPMSFLRKSMDKQGYTPTRMLDQLRNG 975

Query: 993  NNIRLAAMVVSKQQKKTRKG 1012
              I+LA +V+ +Q+  + KG
Sbjct: 976  QQIKLAGIVLIRQRPGSAKG 995


>gi|167835340|ref|ZP_02462223.1| error-prone DNA polymerase [Burkholderia thailandensis MSMB43]
          Length = 822

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 243/839 (28%), Positives = 389/839 (46%), Gaps = 70/839 (8%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++        IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAKKQGYRGIAITDECSLAGAPRMHVAAKAQGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G   D+   D       G+ P P    +VLL    EGY  L EL+S    +D  K +
Sbjct: 69  LVVGAYFDVTPDD----VAPGRDPGPGTFGLVLLAQNREGYGNLSELIS-WRRMDAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            R+    L         +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 124 YRLTPRMLAAPPPPFAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLVQ 183

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D     +V        + LVA  +            D + A+     +++     
Sbjct: 184 LQRALDGAHREEVRAAGERRGMRLVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGH-A 242

Query: 248 VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           + P  + +L+ R  +  +F    +A+  T  +   C+F L               D+++ 
Sbjct: 243 LAPNAEQHLRTRQRIAQLFPA--DAVAQTCRMLDACAFSL---------------DELRY 285

Query: 306 EEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
           E  +E           L  +  AG   R   G        +  R+R+++EL +IA + + 
Sbjct: 286 EYPHEIVPAGHTPASYLAQETWAGARERYPSGM------PETVRKRIEYELALIAELNYE 339

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFL V D +Q+A+  NI +  GRGS A SV  Y L +T++DP R +LLFERF++ +R  
Sbjct: 340 PYFLTVYDIVQYARSKNI-LCQGRGSAANSVVCYCLHVTEVDPERSTLLFERFISRERGE 398

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R
Sbjct: 399 PPDIDVDFEHQRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVER 458

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLAD-------PSVDRLLEISQKLEGLYRHAST 527
           + K      AH        D SR   AR          P +    E++ +L    RH S 
Sbjct: 459 VAK------AH-----RWFDGSRDLLARFESVGLDPDTPLIGAWAELAARLLNFPRHLSQ 507

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ D
Sbjct: 508 HSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFD 567

Query: 588 FL-----AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            +     A+ G    ++ I   D +TY ++    T+G+FQ+ES      L  ++P    D
Sbjct: 568 MVTAWRGARDGKPFGMAHIEQGDVKTYDMICRADTVGVFQIESRAQMSMLPRLRPRNYYD 627

Query: 643 IIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
           ++  V++ RPGPI    V  Y  R+ G E +      +   L+ T+GV I+QEQVMQIA 
Sbjct: 628 LVIEVAIVRPGPIQGGAVHPYLKRRQGLEPVTYPKADLKEALERTRGVPIFQEQVMQIAI 687

Query: 701 LLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
           + +G++  EAD LRRAM   K K  +++ + + + G  +       A  IFE +  F +Y
Sbjct: 688 IAAGFTPGEADELRRAMAAWKRKGNIEQYRRKIVDGMRERDYPPEFAEQIFEQIKGFGEY 747

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           GF +SHAA++A + Y ++W+K H P  FLAA +  +        +  QDA++  + ++P
Sbjct: 748 GFPESHAASFAHLVYASSWLKCHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLP 806


>gi|121583266|ref|YP_973702.1| DNA polymerase III, alpha subunit [Polaromonas naphthalenivorans
           CJ2]
 gi|120596524|gb|ABM39960.1| DNA polymerase III, alpha subunit [Polaromonas naphthalenivorans
           CJ2]
          Length = 1041

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 257/878 (29%), Positives = 422/878 (48%), Gaps = 60/878 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L+  S+++ L GA     ++ +       A+A+TD  +L   +     A  AG+  +
Sbjct: 16  YAELRCISNFTFLNGASRPEELVLRARELGYRALALTDECSLAGIVRAHGAAREAGLALL 75

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G Q  +              PF    ++ +LV    GY  L + ++R+    + K   R
Sbjct: 76  VGAQFLV----------ADDAPF----TLTVLVCNLNGYGNLCQYITRLRRSSE-KGHYR 120

Query: 131 ICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYVNLQ 187
           +    +Q     + +++++ G +   ++       Q+    LL F  +  FG  L   L 
Sbjct: 121 LARDSIQGADLVDCVVLVSPGRTSSAEQLL-----QLGRWSLLHFTGRCWFGVELLRRLG 175

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
                 R RE     ++    + LVA  +            DVL A      ++      
Sbjct: 176 DAMWLHRMRE-----VSAATAIALVAVGDVCMHVRSRKPLQDVLTATRLGKRLTDCGFEL 230

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           +   + +L++R  +   +   P AL   T+++A  C+F L       P    +E     +
Sbjct: 231 QSNAERHLRSRLRLAQTY---PAALLAETLKVASHCNFSLDELKYQYP----QEVVPPDE 283

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                LR     G   R   G  A+       +Q+++ EL +I  +++  YFL V D + 
Sbjct: 284 TPAAYLRRMTYEGAGRRWPHGIEAQ------VQQQIEHELALIGELRYEPYFLTVYDIVA 337

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+  +I +  GRGS A SV  Y L +T++DP R S+LFERF++ +R   PD DIDF  +
Sbjct: 338 FARSRHI-LCQGRGSAANSVVCYCLGVTEVDPARMSVLFERFISRERNEPPDIDIDFEHE 396

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+Y+  KYG +R A   T  + + ++A+RDVG+AL    + +D L K      +H
Sbjct: 397 RREEVIQYLYQKYGRDRAALTATVMTYRPRSAIRDVGKALGFDLATLDLLAK------SH 450

Query: 486 PVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                   D  R     L   D +V +L+ ++ +L G  RH S H  G V+    LS++V
Sbjct: 451 QWWDGGQVDAERLTALGLFPDDLAVQQLMLLTTQLMGFPRHLSQHTGGFVLTRGLLSRMV 510

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
           P+         V Q++   ++  GL+K D L L  LT L+K+L+F+ A+RG   ++  IP
Sbjct: 511 PIENASMPGRTVIQWDKDDLDATGLLKVDVLALGMLTALRKALEFVGARRGHSFEMQDIP 570

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
            +D  TY ++    T+G+FQ+ES   +  L  +QP C  D++  V++ RPGPI   +V  
Sbjct: 571 PEDPATYEMMCQADTVGVFQIESRAQQGMLPRLQPRCFYDLVIEVAIVRPGPIQGGMVHP 630

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
           Y  R+ G+E +      +   L  T GV ++QEQVMQ+A L +G++  EAD LRRAM   
Sbjct: 631 YLARRQGREAVSYPSEALREALGRTLGVPVFQEQVMQLAILAAGFTPGEADGLRRAMAAW 690

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K K  + +  +R + G +  G  K  AV IFE +  F++YGF +SHAA++A++ Y +AW+
Sbjct: 691 KRKGGLAQYYDRIVGGMTARGYEKEFAVAIFEQIKGFSEYGFPESHAASFALLVYASAWL 750

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----NRI 835
           K   P  FLAA +  +        +  QDAR+  +++ P  V    +D  + D      +
Sbjct: 751 KRAEPAAFLAALLNAQPLGFYAPSQLVQDARRHGVEVRPIDVMASDIDATLEDLPQVPAV 810

Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
              L  + G+G   A  I+ A  D PF+S ED   R D
Sbjct: 811 RLGLRLVAGLGRLAAARIVAARMDCPFESAEDLSMRAD 848


>gi|311694224|gb|ADP97097.1| error-prone DNA polymerase [marine bacterium HP15]
          Length = 1039

 Score =  326 bits (835), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 284/1040 (27%), Positives = 470/1040 (45%), Gaps = 106/1040 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+++ L GA   + + ++       A+AITD  ++            + ++ I
Sbjct: 6    YAELFCFSNFTFLTGASHPHELAERAHELGYTALAITDACSVAGIPRAWAALAESPVKLI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-----------RM 119
             G   ++                 T P  +LL  T +GY +L +L++           ++
Sbjct: 66   TGSWFELS----------DAPAGATQPRFILLARTRKGYGQLCQLITTGRRRAEKGHYQL 115

Query: 120  YLLDQGKQSVRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
            +  D    ++  CL  WL    TE             D+A                 +LF
Sbjct: 116  FYRDIETHTLNDCLCLWLPPSPTEA----------DSDQALACGE---------WLARLF 156

Query: 179  GDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
              R+++   R     +  R +++  LA    +P+ A       S E     DVL A+ + 
Sbjct: 157  DPRIWIAAARTLESGEEQRLARIHWLADQLRIPVAAVGEVHMHSRERQPLQDVLTALRNH 216

Query: 238  TVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSF----ILQVHAPI 291
            T +           + YL+    +  +F   PEA L  T+ IA +C+F    +   + P 
Sbjct: 217  TNLENAGHCLFQNGERYLRPLPVLQRLF---PEAWLHETLAIASQCTFEPGSLRYEYPPD 273

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            L    E     +++      R +   G  +++ Q  I K             EL +I+ M
Sbjct: 274  LVPEGETPAGYLKRLTREGERRRYPDGTPLQV-QSLIRK-------------ELGLISEM 319

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             +  YFL + D + +A+   I +  GRGS A S   Y L IT+++P R  LLFERF++ D
Sbjct: 320  NYEHYFLTIHDIVDFARSRGI-LCQGRGSAANSAVCYCLGITEVNPARVELLFERFISKD 378

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+DF  +RR+EVI+Y+  +Y  ER A   T    + K+A+RDVG+AL    + 
Sbjct: 379  RNEPPDIDVDFEHERREEVIQYIYRRYTRERAALAATVIRYRPKSAIRDVGKALGFDPAL 438

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            V++L + I          Q I D    R  ++A    D+   +   L G  RH S H  G
Sbjct: 439  VEQLLEGIDWRDKATNWRQQILDKKITRNPQVA----DQFFTLVNTLLGFPRHLSQHVGG 494

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA- 590
             VI   PL++LVP+     +D  V Q++   +E  GL+K D L L  L+ ++K+L+ ++ 
Sbjct: 495  FVISAGPLAELVPVENAAMTDRTVIQWDKDDLESLGLMKVDVLALGMLSAIRKALELISD 554

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G    +  IP +D +TY +L T  ++G+FQ+ES      L  ++P+   D++  V++ 
Sbjct: 555  EKGQPFRIQDIPQEDRDTYAMLQTGDSIGVFQVESRAQINMLPRLKPETYYDLVIEVAIV 614

Query: 651  RPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGPI  D +  Y  RK+G E +   +  +  +L+ T GV I+QEQV+++A + +G+S  
Sbjct: 615  RPGPIQGDMVHPYLRRKHGLEPVDYPNDAVRKVLERTLGVPIFQEQVIKLAMVAAGFSAG 674

Query: 709  EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EAD LRRAM   K   ++   +E+ ++G  + G     A  +++ +  F  YGF +SHAA
Sbjct: 675  EADQLRRAMAAWKSHGDLTPFREKLVTGMLERGHDADFAERLYQQICGFGGYGFPESHAA 734

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++A++ Y +AW+K HYP  F  A +  +        +  QDAR+ N+ ++PP VN    D
Sbjct: 735  SFALLVYVSAWIKRHYPAAFYCALLNSQPMGFYSPSQLVQDARRHNVTVLPPDVNASQWD 794

Query: 828  FKV-GDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
              + G+NR +   L  I+G+    A  I +   ++P +             LN+R +E L
Sbjct: 795  HTLQGENRHLRLGLRIIQGLSVYGAERIHQ---NRPAEGYRSASELRRLAALNQRDMELL 851

Query: 886  VFAGALDCFGYSRMQ-LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
              A A+  F  +R Q   Q LD+ Q                +FA E          E+  
Sbjct: 852  AGANAMPGFTANRHQAYWQLLDHEQP-------------TELFAEETAVDYQPDYCEQLP 898

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY----EESVATIRGNNIRLAAM 1000
              +       +    G     HPL     +LR  G   +    E+  +T  G  +++A +
Sbjct: 899  EPSEGQNVLADYASQGLTLQRHPL----ALLRDQGHLKFCLSAEQLKSTKAGIPVQVAGL 954

Query: 1001 VVSKQQKKTRKGSRIGWVTF 1020
            V  +Q    R GS  G VTF
Sbjct: 955  VTGRQ----RPGSASG-VTF 969


>gi|257140342|ref|ZP_05588604.1| error-prone DNA polymerase [Burkholderia thailandensis E264]
          Length = 1072

 Score =  326 bits (835), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 249/846 (29%), Positives = 395/846 (46%), Gaps = 77/846 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++        IAITD  +L  A      A    + 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAKKHGYRGIAITDECSLAGAPRMHVAAKGHELP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G   D+   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFDVTPDD----VAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            R+    L     E + +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 124 YRLTPRMLAAPPPEFIHLRGVPDCFAILVPTYPARADVLDAQLAWFGALFGERARLGLVQ 183

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D     QV        + +VA  +    +       D + A+     + +     
Sbjct: 184 LQRALDGAHREQVRAAGERRGMRIVALGDVTMHTRSCKPLQDTMTAIRLGMPIGECGHA- 242

Query: 248 VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           + P  + +L+ R  +  +F    +AL  T  +   C F L               D+++ 
Sbjct: 243 LAPNAEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DELRY 285

Query: 306 EEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
           E  +E           L  +  AG   R   G        +  RQR+ FEL +IA +K+ 
Sbjct: 286 EYPHEIVPAGHTPTSYLAQETWAGARRRYPDGV------PEAVRQRIGFELALIADLKYE 339

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFL V D +++A+  +I +  GRGS A SV  Y L +T+++P + +LLFERF++ +R  
Sbjct: 340 PYFLTVYDIVEYARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFISRERGE 398

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R
Sbjct: 399 PPDIDVDFEHQRREEVIQYLYGKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVER 458

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAST 527
           + K                D SR   AR A    DP V  +    +++ +L    RH S 
Sbjct: 459 VAK-----------EHRWFDGSRALLARFASVGLDPDVPLIRTWAKLAARLLNFPRHLSQ 507

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ D
Sbjct: 508 HSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFD 567

Query: 588 FL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P   
Sbjct: 568 MITAWRGPPLPDGRPFRLEHIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRGY 627

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKN---GKEKIVSIHP--LIDPMLKETQGVIIYQE 693
            D++  VS+ RPGPI    V  Y  R+    G+ +    +P   ++ +L+ T G+ I+QE
Sbjct: 628 YDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEVEGEITYPSEALERVLERTLGIPIFQE 687

Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           QVMQIA + +G++  EAD LRRAM   K K ++ K   R + G  + G S+  A  IFE 
Sbjct: 688 QVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHRRIVDGMLERGYSREFAEQIFEQ 747

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++ 
Sbjct: 748 IKGFGEYGFPESHAASFAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPAQLVQDAKRH 807

Query: 813 NIQIMP 818
            + ++P
Sbjct: 808 GVTVLP 813


>gi|271965758|ref|YP_003339954.1| DNA polymerase III subunit alpha [Streptosporangium roseum DSM 43021]
 gi|270508933|gb|ACZ87211.1| DNA polymerase III, alpha subunit [Streptosporangium roseum DSM
            43021]
          Length = 1152

 Score =  325 bits (834), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 294/1104 (26%), Positives = 484/1104 (43%), Gaps = 118/1104 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+V S +SLL GA     ++ +       A+A+TD ++L  A+ F+     AG++P+
Sbjct: 6    FVHLRVASGFSLLHGASRPQALVARAGGLGMSALALTDRDSLAGAVRFATACRTAGVRPV 65

Query: 71   IGCQLDID--------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
             G  L ++         +D L+  + G+        +  L   A G+  L  ++S  +  
Sbjct: 66   FGADLAVEGARSAAAPHRDRLRGEDVGRC------RVTFLARDASGWSALCRMISAAHAA 119

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181
            D+  + V    +     G  GL++L G  S  +  A     +  A KRL  +++  G D 
Sbjct: 120  DR-DEPVLSRQALAAHAGRGGLVVLLGPDSD-VGGAIVDRDAGTALKRLRAWQEGIGRDA 177

Query: 182  LYVNLQRHRGYDRYRESQV-----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            + + +  H        S V     +  A    L  V TN   +         DVL A  H
Sbjct: 178  VRLEIVCHLSPGPGPGSLVLAGRMLAFAARQRLVPVLTNAVRYAERSGARVGDVLAACRH 237

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARRCSF-- 283
               + +        + YLK+ +EM  +   +              L  T+  AR C+   
Sbjct: 238  RLPIGRAR--HANAEAYLKSPAEMTRVAEQVAAVAGLPAAAAGRLLACTLATARACTLDP 295

Query: 284  -------ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
                     +VH P  P  +     D     +  +R +  AGL         A+G  A  
Sbjct: 296  VADLGIGDRRVHFP-EPYLLGA---DPAGAADGVMRARCEAGLN--------ARGMGADR 343

Query: 337  YR-QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
               QRL  EL VIAR+ ++ YFL VA+     +   + V   RGS AGS+  YAL I+ +
Sbjct: 344  VALQRLQEELAVIARLGYAPYFLTVAEITDMIRAMGVRVA-ARGSAAGSLAVYALGISGV 402

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DPLR  LL ERFL+  R S+PD D+D    RR EV R +  +YG ERVA +    + + +
Sbjct: 403  DPLRHGLLMERFLSTRRRSLPDVDLDVESARRPEVYRAILGRYGPERVAAVSAAATYRVR 462

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE--ARLADPSVDRLL- 512
            +A+RD G AL +   ++D L    P    H  +  A    +   +  AR   P   RLL 
Sbjct: 463  SAIRDAGAALGVDAGEIDALATAFP----HIRARDARRAMAELPQLAARGIRPDRLRLLW 518

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLI 569
            ++ + L+GL R  + H   I++ D  L    P+          L ++QF+   +E  GL+
Sbjct: 519  DLVEALDGLPRRTAMHPCAIIVSDATLLDRSPVQSVPAGAEGGLSMSQFDKDDVEALGLL 578

Query: 570  KFDFLGLKTLTLLQKSLDFLAQ-RGVKV---DLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            K D LG++  + +  ++  +A+  G  V   D + +P DD   + L+ +  T+G FQ+ES
Sbjct: 579  KLDVLGVRMQSAIAHAVAEIARVEGHSVAIDDPAQVPLDDPAAFALIRSAETVGCFQIES 638

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             G R  L  ++P+   D+I  +SL+RPGP+  D I  +   ++G+  +   H  + P+L 
Sbjct: 639  PGQRDLLSRLRPESFADLIIDISLFRPGPVAADMITPFLAARHGRAPVDLPHADLAPVLA 698

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET GV+++ EQV++I  +++G    +AD +RRA+      E ++ +  F + A+  G   
Sbjct: 699  ETCGVVVFHEQVIRILAIMTGCDPGQADEVRRALAD--GGEAERARTWFTAVATDRGYDP 756

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   ++  LA F  +GF K+HAAA+A+ + Q+AW+K H+P  F AA +T +     K +
Sbjct: 757  GVVERVWRTLAGFGSFGFAKAHAAAFALPTLQSAWLKAHHPAAFYAAVLTHDPGMYPK-R 815

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKV------GDNR-----IYYSLAAIKGVGTTTARH 852
                DAR+  + I+P  VN     +++      GD       +  +LA +KG+   T   
Sbjct: 816  LLLADARRHGVTILPLDVNHSAGPYRIEPLPRAGDTACGRFGVRLALADVKGI---TGAE 872

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-------------GYSRM 899
            +    A +P+ SL D   R    + +  + E LV AGALD               G +R 
Sbjct: 873  VARIVAGRPYTSLADCWQRA---RPSLPIAERLVLAGALDALHGLSHGRGRRAGSGLTRR 929

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR-------- 951
             LL  +  + ++     +    +       E G  + +          +  R        
Sbjct: 930  DLLIQVGELHRWTSASSRRPARRGSARPPVETGDGTAQQLPLALGAAETPRRNGLPDMSD 989

Query: 952  ---FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
                  E  +LG   S H +  Y P+LR + +           G  + +    V+     
Sbjct: 990  ADLVAAELDILGLDASRHLITDYHPLLRALAVTASSRLRGCSDGALVLVGGAKVAIATPP 1049

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
             R G RI + +  +     E  FF
Sbjct: 1050 IRSGRRIMFCSLDDGTGITEVTFF 1073


>gi|116687208|ref|YP_840454.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
 gi|116652923|gb|ABK13561.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
          Length = 961

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 264/929 (28%), Positives = 430/929 (46%), Gaps = 83/929 (8%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  L   S++S L GA     ++ +        IA+TD  +L   +     A      
Sbjct: 38  PAYAELFCLSNFSFLHGASHAEELVKRANQLGYSGIAVTDECSLAGVVRAHVAAKDLNFP 97

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS---------RM 119
            +IG           K+T    +P      ++LL    EGY  L EL++           
Sbjct: 98  LVIG--------SYFKLTQADSSP---ALDLILLAQNREGYGNLSELITLARIRSPKGGY 146

Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
           +L  Q         + L+ +     I++    + P          +  + ++    + F 
Sbjct: 147 HLTSQDLLKPETTYAHLKGVPDCLAILIPRFPANP----------EELDAQVEWLIETFP 196

Query: 180 DRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            R +V L  H R  D   E  V  +A  + +P+VA               D + A+    
Sbjct: 197 GRAWVGLCLHQRAMDNVHEDVVEHVASGNGVPVVAVGQVTMHVRSRKPLQDTMTAIRVGK 256

Query: 239 VVSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAP--- 290
            V++     +TP  + +L++R  + +++ +   AL  T+ I  RC F L   +   P   
Sbjct: 257 PVAECGY-ELTPNAEQHLRSRMRLANLYPE--SALRETIAILSRCRFSLGELRYEYPDEL 313

Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
           + P F               LR +   G   R   G         + +++++ EL +I  
Sbjct: 314 VPPGFTPT----------TYLRQETYIGAHRRFKNGI------PHNVQKQIEHELELITE 357

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           +K+  YFL V D +++A+   I +  GRGS A S   Y L IT++DP R ++LFERF++ 
Sbjct: 358 LKYEPYFLTVYDIVKFARSEGI-LCQGRGSAANSAVCYCLGITEVDPARGTMLFERFVSR 416

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
           +R S PD D+DF   +R+ V++Y+  KYG +R A      + +A+  LR+VG+A+ +   
Sbjct: 417 ERNSPPDVDVDFEHQKREIVVQYIYRKYGRDRAAIAAAVSTYRARGVLREVGKAIGVDAQ 476

Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS---VDRLLEISQKLEGLYRHAST 527
            VDR+ K           LQ      RF E+ L DPS   +     ++ +L G  RH S 
Sbjct: 477 IVDRVAKTHHWFDGSSDLLQ------RFSESGL-DPSASIIHTWASLATQLCGFPRHLSQ 529

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           H+ G VI    LS+LVP+      D  V Q++   +E  GL+K D L L  L++++++LD
Sbjct: 530 HSGGFVISRGKLSRLVPIENAAMPDRSVIQWDKDDLESLGLLKVDVLALGMLSVIRRALD 589

Query: 588 FLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            ++ QRG   ++  IP +D ETY +++   T+G+FQ+ES   +  L  ++P    D++  
Sbjct: 590 LVSLQRGEPFEMQDIPPEDPETYDMISKADTVGVFQIESRAQQPMLPRLKPKTFYDLVIE 649

Query: 647 VSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
           V++ RPGPI    V  Y  R+ G + +      ++  L  T GV I+QEQVMQ+A L +G
Sbjct: 650 VAIVRPGPIQGGAVHPYLRRRQGIDPVSYPSKDLETALSRTLGVPIFQEQVMQVAILAAG 709

Query: 705 YSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
           +S  EAD LRRAM   K K  ++   +R +SG    G  +  A  IF  +  F DYGF +
Sbjct: 710 FSPGEADGLRRAMAAWKRKGGLEPYHDRLVSGMLMRGYDREFAEAIFAQIKGFGDYGFPE 769

Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
           SHAA++A++ Y ++W+K H P  FL + +  +        +  QDAR+  + I+P  V  
Sbjct: 770 SHAASFALLVYVSSWLKCHEPEAFLVSLLNSQPMGFYSPSQLIQDARRHGVTILPADVMV 829

Query: 824 ----PCVDFKVGDN--RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
                 ++++ G     +   L+ ++G+    A  I  A A K F S  D   R    +L
Sbjct: 830 SNWESSLEYREGAQPPAVRLGLSLLRGMRVEAAERIELARAVKAFSSTADLGKRA---QL 886

Query: 878 NRRVLESLVFAGALDCF-GYSRMQLLQSL 905
           +R     L  A AL    G  R  L QS+
Sbjct: 887 DRHDFHVLARADALVSLAGGRRSALWQSV 915


>gi|85708489|ref|ZP_01039555.1| DNA polymerase III subunit alpha [Erythrobacter sp. NAP1]
 gi|85690023|gb|EAQ30026.1| DNA polymerase III subunit alpha [Erythrobacter sp. NAP1]
          Length = 1191

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 268/952 (28%), Positives = 436/952 (45%), Gaps = 91/952 (9%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           E++P FV L + S +S L GA    ++     +    AI I D N+    +    +A   
Sbjct: 24  ERAP-FVELGLVSCFSFLRGASDAVDLAMTARSLGYDAIGIADANSFAGVVRIHTEATTL 82

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE--GYQRLIELVS--RMYL 121
            ++P+IGC+++                  TV  I  L    +   Y RL  L+S  RM  
Sbjct: 83  KLRPVIGCRIE------------------TVEGIAFLAYPKDRAAYGRLSRLISAGRMQT 124

Query: 122 LDQGKQSVRIC---LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA------EKRLL 172
           L    Q   +C   L+ L E G    ++L        + A    S+ V       E   +
Sbjct: 125 LSGEWQEKGVCQIDLAMLAEHGEGIQLILLPPEDLETEFAILVPSNVVPLRPQGDEAEAI 184

Query: 173 TFKKLFGDRLYVNLQR-------------HRGYDRYRESQVVQLAYTHELPLVATNNSLF 219
                FG+ +  +L R             +RG D  R  ++  LA+ + L L+ATN+  +
Sbjct: 185 EVVASFGE-ILPHLTRQLPSLGHIAASYLYRGDDTARIDRLDALAHENGLTLLATNDVHY 243

Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            + E     DV+ A+A+ T V+Q         + +LK+  EM  +F+  P A+    E+A
Sbjct: 244 HAPERRPLQDVMTAIANKTTVAQAGHLLHANAERHLKSPQEMQHLFARWPHAIHAAREVA 303

Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
             C F L+      P  I    D +  +E  E+  +  AG E R   G            
Sbjct: 304 DNCDFSLEELRYEYPEEIYP--DGMSPQEYLEI--ETWAGAERRYPHGV------PDSVE 353

Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV-GPGRGSGAGSVTAYALTITDIDP 397
           Q L+ EL +IAR+  + YFL + D + +A+    P+   GRGS A S   Y L IT +DP
Sbjct: 354 QTLERELALIARLDLARYFLTIKDIVDFARSVEPPILCQGRGSAANSAVCYCLEITSVDP 413

Query: 398 LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
            +  LLF+RF++ +R   PD D+DF  +RR+EVI+Y+  KYG ER     T    + + A
Sbjct: 414 AKHQLLFDRFISEERKEPPDIDVDFEHERREEVIQYIYKKYGRERAGLTATVIHYRPRMA 473

Query: 458 LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
           +R+VG+A+ +       L K +       +S +  A+        + DP + R+L+++++
Sbjct: 474 IREVGKAMGLSEDVTASLAKTVWGGWGREISEKHAAETG----MDITDPHLRRVLKLTEQ 529

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
           + G+ RH S H  G ++ +  L++ VP+      +    +++   IE  G++K D L L 
Sbjct: 530 MIGMPRHLSQHVGGFILTEGALTETVPIGNGAMPERSFIEWDKDDIEALGILKVDVLALG 589

Query: 578 TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            LT ++K LD L A  G  + L+ +P +D ETY +L    +LG+FQ+ES      L  ++
Sbjct: 590 MLTCIKKCLDLLEAHHGRALTLATVPREDPETYAMLRKGDSLGVFQVESRAQMNMLPRLR 649

Query: 637 PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKE--KIVSIHPLIDP------MLKETQ 686
           P    D++  V++ RPGPI  D +  Y  R+ G E  +I +  P   P      +L+ T 
Sbjct: 650 PREFYDLVIQVAIVRPGPIQGDMVHPYLKRRRGAEPVQIPAPSPQHGPPDELSSILERTL 709

Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTI 745
           GV I+QEQ M+IA   + +S  EA+ LR+AM   + +  +D+ ++  +      G     
Sbjct: 710 GVPIFQEQAMKIALDAAKFSSLEANRLRKAMATFRSRGMVDELQDMMVGRMVTRGYDPDF 769

Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
           A   F  +  F +YGF +SHAA++A + Y ++W+K H+P  F AA +  +        + 
Sbjct: 770 AERCFNQIRGFGEYGFPESHAASFAHLVYVSSWLKCHFPAAFAAALLNSQPMGFYAPAQI 829

Query: 806 CQDARQFNIQIMPPSVNTPCVDF------KVGDNR---------IYYSLAAIKGVGTTTA 850
            +DAR+  ++++PP VN    D       + GD           +   L  I G+    A
Sbjct: 830 VRDAREHGVEVLPPDVNASQWDCTLEEIGEAGDGETGRLDKHIAMRMGLRQIDGLPEHIA 889

Query: 851 RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             ++ A  +       D     +   L    +E L  A A    G SR Q L
Sbjct: 890 AQLIAAREEG--GGYRDVAELRERGGLGPAHIERLASADAFTSLGLSRRQAL 939


>gi|302668958|ref|YP_003832783.1| DNA polymerase III E DnaE2 [Butyrivibrio proteoclasticus B316]
 gi|302397298|gb|ADL36201.1| DNA polymerase III E DnaE2 [Butyrivibrio proteoclasticus B316]
          Length = 972

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 243/769 (31%), Positives = 367/769 (47%), Gaps = 150/769 (19%)

Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKK-NNIP------------------------ 373
           +R+ +EL VI  M FS YFL+VADF+Q  +K  ++P                        
Sbjct: 52  RRVSYELEVIITMGFSDYFLVVADFLQVGQKIGHMPLDRIEHLRAHMTEMSIEEMISYIE 111

Query: 374 ---------VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
                    +G GRGSGAGSV AY   IT+++P ++ LLFERFLNP+R+SMPDFD D  +
Sbjct: 112 EDMSYPGFTIGIGRGSGAGSVVAYVNYITNVEPTQYDLLFERFLNPERVSMPDFDSDLSK 171

Query: 425 DR-----RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD-----VGRALQ-------- 466
                  RD VI YV  KYG++ V  I T  +L  KAA+ +     V R  Q        
Sbjct: 172 AEAPYGVRDIVIEYVGKKYGYDGVCGICTPSTLAPKAAVMNTANILVDREFQKKKGFKEG 231

Query: 467 --MPYSQVD-----------RLCKLI----PNDPAHPVSLQAIADDSRFREA----RLAD 505
             +P S+ D            L K I    P DP    S + + D S   E+        
Sbjct: 232 DYIPNSEKDPVWVEINKHYTDLSKAIRADIPEDPGTTFSSE-MEDGSTLYESLKMKYAGS 290

Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP-LSQLVPMYRDVRSDLPVTQFNMKWIE 564
                ++E++  L+G+  +   HAAG++I D   + +   +  D  S+    Q N    E
Sbjct: 291 KDATEIIELANMLDGVNDNYGKHAAGVIIADNGNVGEYGALMYDDESNGWKIQMNAVECE 350

Query: 565 -KAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY-HLLTTKGTLGIF 621
             AGL+K DFLGLKTL ++  +L  + + RG+ +++  +P DD E Y  +  T  T+ +F
Sbjct: 351 DTAGLLKMDFLGLKTLNIITMALRLIYENRGIYINVENLP-DDPEVYSKIFATGNTVEVF 409

Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH---PLI 678
           Q  S+GM+Q L+  +PD  +D+  L + +RPGP+  I    ++K+G+    S     P I
Sbjct: 410 QFSSNGMKQMLKKFKPDKFDDLTLLNATFRPGPMKYIDPIADKKHGRPVETSAFDKVPQI 469

Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI----- 733
             +L  T G  +YQEQVM+I Q++  YS+  AD +RRAM KK +  + + +E F+     
Sbjct: 470 QELLAPTYGYPVYQEQVMRIFQIMGQYSIGGADEIRRAMSKKKQYIIAENREIFVHGGEM 529

Query: 734 -----------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
                       GA + GI++  A  +F+ L+ FA YGFNKSH+ AYA  +Y TAW+K H
Sbjct: 530 ENHRTHKSIHVGGAMELGIAEDTAYEVFDALSDFAKYGFNKSHSLAYAKTAYMTAWLKLH 589

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
           YP+EF  A + +E +  +++     DA+   ++I P  +NT    F     +IY+  A  
Sbjct: 590 YPIEFYTACLCIEEN--KEMAAILADAKANGVKIAPVDINTSRAGFTCDTEQIYFGFA-- 645

Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
              G +  +     + D  + S+ DF  R     +    LE LV  GA D F  SR  LL
Sbjct: 646 ---GVSMEKATQNLTHD--YVSVADFILR---GGIKGSKLEGLVKVGAFDNFTTSRKALL 697

Query: 903 QSLDNIQKYAQWVEKNRTN--KHENIFAHEKGTFSDKITLEKFS------VENSSVRFEN 954
           + L    ++ + ++K + N  K+ NI A  +     K  L+K+        E +  R EN
Sbjct: 698 EVLPVYAEHMEAIKKAQANVTKYTNILADMEADPEGKTLLKKYDRKSWPKKEEAQTRLEN 757

Query: 955 --------------------------------EQRVLGFYFSGHPLDVY 971
                                           E+ + G Y +GHP+D+Y
Sbjct: 758 AKESLDFHTKAIKAQVIPMQQFKDTMYERLQAEKDLCGLYLTGHPVDMY 806


>gi|319793113|ref|YP_004154753.1| DNA polymerase iii, alpha subunit [Variovorax paradoxus EPS]
 gi|315595576|gb|ADU36642.1| DNA polymerase III, alpha subunit [Variovorax paradoxus EPS]
          Length = 1118

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 290/1074 (27%), Positives = 471/1074 (43%), Gaps = 135/1074 (12%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   +++S   GA +   ++++       A+AITD            +   AGI 
Sbjct: 33   PDYAELHCLTNFSFQRGASTPEEVVERAYQLGYAALAITD------------ECSVAGIV 80

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPS------------------IVLLVSTAEGYQ 110
                C+ D  M+  L    +     P +P                   +V++ +  EG+ 
Sbjct: 81   RAYVCRRD--MEHTLDEYEREHPEEPPIPRNLTFRLLFGSEFRFERFRLVVIANDTEGWG 138

Query: 111  RLIELVSRMYLLDQGKQSVRICLSW-------LQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
             L E ++     +  K   R+  SW       LQ    + L +    S G +D A     
Sbjct: 139  NLCEFITAARNTELPKGEYRV--SWEDSDVASLQ--NCQVLFVPHRESGGAVDVATLHED 194

Query: 164  SQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE---LPLVATNNSLFL 220
                   LL  K L+   L++ ++     D   +   V L    E   +PLVA  +    
Sbjct: 195  -------LLAAKALYAGNLWLAVEMLNELDD--DLWFVTLMQASEQTGVPLVAAGDVHMH 245

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            +      HDVL AV     V++     +   + +L+ R  +  ++  LPE L NT+ +A 
Sbjct: 246  ARSRKPLHDVLTAVREGKTVAECGFALQSNAERHLRQRVRLAELY--LPEMLANTLVVAE 303

Query: 280  RCSFILQVHAPILPRFIEK------ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
            RC F         P+ I        E     +     L  K  AG + R   G I     
Sbjct: 304  RCRFD--------PKVIRDNYKYPLEMLGSNETATQTLARKTWAGAQERYP-GGIPDAVR 354

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
            AQ     L  EL++I  +++  +FL V D +++AK   I +  GRGS A SV  Y L IT
Sbjct: 355  AQ-----LHKELDLIRELEYEMFFLTVEDIVRFAKSQKI-LCQGRGSSANSVVCYCLGIT 408

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
             I P +  LLFERFL+  R   PD D+DF   RR+EVI+Y+  KYG ER A        +
Sbjct: 409  AISPEKSHLLFERFLSRHRHEPPDIDVDFEHQRREEVIQYIYEKYGRERAAIAAVVICYR 468

Query: 454  AKAALRDVGRALQMPYSQVDRLCK--LIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            +++ALRDVG+A+ +    VD   K     +D      L A       +E       + + 
Sbjct: 469  SRSALRDVGKAIGIDERLVDEFAKDHYWFDDAVLGEQLNAACARVGVKEDEF---KLVQW 525

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            +E++Q+L+G  RH S H  G V+    L++LVP+ +    D  V Q+    +E  G++K 
Sbjct: 526  IELTQRLKGFPRHLSQHVGGFVLTHTKLTRLVPVEKASMKDRSVIQWEKDDLEAMGMLKV 585

Query: 572  DFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            D L L  L+ +++ LD + + RG  V +  +P DD + + ++    T+G+FQ+ES     
Sbjct: 586  DVLALGMLSAIRRGLDHMNRWRGSMVQMHDVPHDDQKVFDMICDADTVGVFQIESRAQMS 645

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPM---LKET 685
             L  ++P C ED++  V++ RPGPI   +V  Y  ++    K + IH   D +   L+ T
Sbjct: 646  MLPRLKPRCYEDLVIEVAIVRPGPIQGGMVHPYLKQRERVAKGLPIHYEKDELREALERT 705

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKT 744
             G+ I+QEQVMQIA + + +S  EAD LRRAM   K K  +DK   + ++G   N   + 
Sbjct: 706  LGIPIFQEQVMQIAMIAARFSADEADQLRRAMAAWKRKGGLDKFHAKLVNGMVDNEYPRE 765

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
             A  IF+ +  F DYGF +SHAA++A++   ++W+K + P  FLAA +  +        +
Sbjct: 766  FAEAIFKQILGFGDYGFPESHAASFALLVTVSSWLKNYEPACFLAALLDSQPMGFYSPSQ 825

Query: 805  FCQDARQFNIQI-----------------------MPPSVNTPCVDFKVGDNR--IYYSL 839
              QDAR+  +++                       MPPS +    +    +N+  +   L
Sbjct: 826  LVQDARRHGVEVRPVDVTHSDFDTTLEARAPDAPRMPPSTDARYAERLGNENQPAVRLGL 885

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
              I G+       +++A A  PF S ED   R +    +   L +     +L   G+ R 
Sbjct: 886  NRISGLSKEGVERLLKARAQSPFTSTEDLALRAELDGKDMAALAAADALMSLS--GHRRQ 943

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            Q+            W   + T +  +    +    ++++ L   + E   +    +   L
Sbjct: 944  QV------------W---DATAQRRSPALLKGVPINEQVLLLPAAPEGEEI--VGDYASL 986

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            G     HPL + +P L +M +   EE  A   G  +R   +V  +Q+  T  G+
Sbjct: 987  GLTLRRHPLALLRPRLSRMKLMSAEELRAQPTGRTVRACGIVKGRQRPGTANGT 1040


>gi|329895034|ref|ZP_08270799.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC3088]
 gi|328922530|gb|EGG29867.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC3088]
          Length = 1094

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 290/1045 (27%), Positives = 463/1045 (44%), Gaps = 134/1045 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+YS L GA   + ++ + A     AIAITD  +L   ++   +A  + I+ I
Sbjct: 68   YCELVCTSNYSFLRGASHPDELVARAAELGYGAIAITDECSLAGVVKAHVQAEISDIKLI 127

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSV 129
            +G +          +T +G         +V L      Y  L  L+SR     ++G+  V
Sbjct: 128  VGSEF---------LTVEGV-------RLVALAPNRNAYSELSGLISRARRRANKGQYEV 171

Query: 130  RI---------CLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +         CL  WL E                       N S VA     T  K F 
Sbjct: 172  HLPDLIFHLKHCLIIWLPEQ---------------------LNRSHVAFGH--TLSKRFK 208

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             RL++  +     +  ++ Q  + A + EL  P+VA  +    S +    HD L A+ H 
Sbjct: 209  TRLWLGFKHLLAGETRQQFQTFE-ALSQELNIPMVACGDVRMHSPKRKALHDALTALYHR 267

Query: 238  TVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
            T + +    R+     +L+    + +++ D  E ++ +  IA +C F L+      P   
Sbjct: 268  TQIDRLGTLRLGNSQQHLRPLELIKALYPD--ELIQQSQTIADQCQFSLRELRYEYP--- 322

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
             +E     +     LR +   G   R   G           ++R++ EL +IA++++  Y
Sbjct: 323  -QEIVPTDQTASEYLRQEVKQGCRQRWPNGT------PDAIQKRIEKELELIAQLRYEHY 375

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D + +AK   I +  GRGS A SV  Y L IT++ P    LLFERF++ +R   P
Sbjct: 376  FLTVYDIVNFAKSRRI-LCQGRGSAANSVVCYCLGITEVSPEHIDLLFERFISQERDEPP 434

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  +RR+EVI+Y+  KY   R A   T  + + ++A+RD+GRA+    S +++L 
Sbjct: 435  DIDVDFEHERREEVIQYIYQKYSRRRAALAATVITYRTRSAIRDIGRAMGFDASFIEQLS 494

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            + I         LQ      RF E  +  ++        +  ++ G  RH S H  G VI
Sbjct: 495  QSIAWWDRR-AELQ-----QRFNEQGIKHSEQQAMHFQHLVSQILGFPRHLSQHVGGFVI 548

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
               P+SQLVP+      D  V Q++   IE  GL+K D L L  L+ ++KSLD +A    
Sbjct: 549  SAGPISQLVPVENASMPDRTVIQWDKDDIEALGLLKVDVLALGMLSAIRKSLDLIANYQP 608

Query: 595  KV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +  L  IP +D  TY +L T  +LG+FQ+ES      L  ++P C  D++  +++ RPG
Sbjct: 609  TIAHLREIPKEDASTYRMLQTGDSLGVFQIESRAQMAMLPRLKPACFYDLVIEIAIVRPG 668

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PI   +V  Y  R+ G E +   +  I  +L+ T GV I+QEQV+++A + +G+S  EAD
Sbjct: 669  PIQGEMVHPYLRRREGLEPVSFPNDAIKGVLQRTLGVPIFQEQVIRLAMVAAGFSGGEAD 728

Query: 712  VLRRAM---GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             LRRA+   GK  K  +   + + I G   NG  +  A  +F+ +  F  YGF +SH+A+
Sbjct: 729  QLRRAITNWGKNSK--LLTFEHKLIQGMLANGYDEAFANRLFDQIKGFGGYGFPESHSAS 786

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---- 824
            +A+++Y +AW+K H+P  F    +  +        +  QDA++  I I P  +N      
Sbjct: 787  FALLAYASAWLKRHHPGAFYVGILNSQPMGFYSPSQLIQDAQRHGIHIEPLDINQSLWDH 846

Query: 825  ---CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRR 880
                 D++   N I   L  +KG+   TA  I+++     PF +L +   R     +   
Sbjct: 847  QLVATDYRQQPNTIRLGLRLVKGLSEATATRIVDSRRQHGPFKALNELRQRA---AIPAN 903

Query: 881  VLESLVFAGALDCFGYSRMQ-------------LLQSLDNIQKYAQWVEKNRTNKHENIF 927
             L++L  A AL      R Q             LL  LDN + Y Q       +  EN+ 
Sbjct: 904  ELQALSSADALSTISGHRHQTQWQVLGLPEHRPLLARLDNAENY-QSPNIEPPSVAENVL 962

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
            A  + T                          G     HPL + +          + E +
Sbjct: 963  ADYQST--------------------------GLTLRDHPLSLLRKEWPFKRCSTHRELL 996

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKG 1012
            A      +R+A +V  KQ+  T  G
Sbjct: 997  AASSQRFVRIAGLVTCKQRPGTASG 1021


>gi|152967159|ref|YP_001362943.1| DNA polymerase III, alpha subunit [Kineococcus radiotolerans
           SRS30216]
 gi|151361676|gb|ABS04679.1| DNA polymerase III, alpha subunit [Kineococcus radiotolerans
           SRS30216]
          Length = 1320

 Score =  325 bits (832), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 274/988 (27%), Positives = 455/988 (46%), Gaps = 124/988 (12%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +P F HL V S YSL  G  +   ++ + A      +A+TD + L  A++F +    AGI
Sbjct: 5   APPFPHLHVASGYSLRYGTSTPAALVARAADLGLATLALTDRDGLHGAVKFVRACVDAGI 64

Query: 68  QPIIGCQLD-------------------IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE- 107
            P++G  L                    +  + +      G    P  P I  L   A+ 
Sbjct: 65  APVLGVDLATTPTGSATGLPEWADPSVAVRRRGSRAPVRGGSVVDPRWPRITALALGADE 124

Query: 108 -----GYQRLIELVSRMYLLDQ-GKQSVRICLSWLQEIGTEG----LIMLTGGSSGPIDR 157
                G+  L  LVS  +L  + G     + L      GT+G     ++L  GS   + R
Sbjct: 125 AGAGRGWAGLCRLVSATHLGGRRGTPVSSLELVAAHARGTDGRAVLAVLLGPGSE--LGR 182

Query: 158 AFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRHRGYDRYRES-----QVVQLAYTHELPL 211
           A       +A   L  +++ L    L++ +  H        S     +V+ LA    +P 
Sbjct: 183 AVLARRDDLARAVLRRWQEALPAGSLHLEVVCHHAPPGTAGSVEHAARVLGLAREAGVPA 242

Query: 212 VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
           V T        +     D+L AV     +  +   R T   +L   +EM    +D+  A 
Sbjct: 243 VLTAAVRSAEPDGALTADLLDAVRRLVPLGPRHLDRTTGQGHLLPSAEMARTAADVARAA 302

Query: 272 ENT------------------VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            +                   ++ AR     L  H    P  +    DD+  ++   LR 
Sbjct: 303 GDPAAAADLLAATAVLAGRARIDPAR--DLGLGRHHLPDPAAL-GLGDDV--DQSALLRG 357

Query: 314 KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
           +A A +  R      ++     + R+RLD EL +I ++ F+ YFL VAD     +   + 
Sbjct: 358 RAEARIAARYPGAGASR---EAEVRRRLDEELAIIEQVGFASYFLTVADVCDLTRAMGVR 414

Query: 374 VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
           V   RGSGAGS+  + L I+D++PL   LL ERFLNP R  +PD D+D    RR++V R 
Sbjct: 415 VA-ARGSGAGSLVNHLLGISDVEPLGHGLLMERFLNPRRGQLPDIDLDVESARREDVYRA 473

Query: 434 VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
           V +++G ERV  +    S + + A+RDVG AL +P ++VD +    P+      +  AIA
Sbjct: 474 VLDRFGGERVTCVSMMDSYRVRHAVRDVGAALGLPPAEVDAIATAFPHL-RARDARAAIA 532

Query: 494 DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
           +    R + L +  +    ++ ++L+GL RH + H  GIV+ +R L    P+    R   
Sbjct: 533 ELPELRRSGLGEERLSTFFDLVERLDGLPRHVALHPCGIVLSNRTLLDRTPVEASWRG-F 591

Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS---LIPFDDHETY 609
           P++QF+   +E  GL+K D LG++  + +  ++  + +  GV++DL     +P DD  T+
Sbjct: 592 PMSQFDKDDVEDLGLLKLDVLGIRMQSAMAYAVREVERVEGVRIDLDDRQQVPLDDPATF 651

Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNG 667
            L+ +  TLG FQ+ES G R+ +    P+   DI+  +SL+RPGP+  D +  +   + G
Sbjct: 652 RLIRSTRTLGCFQIESPGQRELVGKFAPETFHDIVVDISLFRPGPVKSDMVAPFLRARQG 711

Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMD 726
                 +   + P+L++T GV+++ EQV++I +  +G+ L+ +D  RR +G ++ +EEM+
Sbjct: 712 WAAPEFLDDRLRPVLEQTHGVVVFHEQVIEIIRATTGHDLAVSDEYRRHLGTRQGQEEME 771

Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            Q +R    A ++G  + +   I+E+L  FA +GF K+HAAA+A+ +YQ+AW+KTH+P  
Sbjct: 772 PQFKRR---AVEHGYPEDVVARIWEVLKAFASFGFCKAHAAAFALPTYQSAWLKTHHPAA 828

Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT----------------------- 823
           FLA  +T +     K +    DAR   ++++   VN                        
Sbjct: 829 FLAGVLTHDPGMYPK-RLILDDARNLGVEVLGLDVNASGDTYRVEPVDLPGPRPAPHGQA 887

Query: 824 ---PCVDFKVGDNR--------------IYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
              P   ++ G +               I  SL+ +KG+   +A  +    A +P+ SL 
Sbjct: 888 ALHPWPGWREGRDAEGLGEGVADGTGFGIRLSLSDVKGI---SAAEVSRLVAGQPYRSLA 944

Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCF 894
           D   R    + +R V E LV  GALD  
Sbjct: 945 DLWQRA---RPSRPVAERLVLTGALDSL 969



 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 44/106 (41%)

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
             A + G   +++          + R   E  VLG   S H +D Y P+LR +G+    E 
Sbjct: 1052 LALDLGDAPEEVAPSGLPEMTGAERVRAELDVLGLDVSSHVVDFYAPLLRALGVTPAREL 1111

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +      + +A + V+ Q    R G R+ ++T  +     +  FF
Sbjct: 1112 RSRRNAAQLLVAGVKVATQTPPVRSGRRVVFLTLDDTTGPLDVTFF 1157


>gi|297161682|gb|ADI11394.1| DNA polymerase III, alpha subunit [Streptomyces bingchenggensis
            BCW-1]
          Length = 1240

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 304/1158 (26%), Positives = 476/1158 (41%), Gaps = 183/1158 (15%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL   S +S+  GA+    +    A     AIA+TD ++L  A+ F++   AAG++
Sbjct: 2    PGFTHLHTASGFSMRYGAVHPERLAQCAAERGMDAIALTDRDSLAGAVRFAKAGAAAGVR 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFP------------------TVPSIVLLVSTAEGYQ 110
            P+ G  L +          Q + P P                  + P  V L        
Sbjct: 62   PLFGVDLAV----------QARAPEPGRTVRRRTPVRGGAFIDESAPRAVFLARGGAAGW 111

Query: 111  R-LIELVSRMYL----------LDQGKQSV-----------RICLSWLQ-EIGTEG---- 143
              L  LVS  +            D G  +            +  L W   E G  G    
Sbjct: 112  AALCGLVSAAHAGEAPAGAHSGPDAGTHAGTRSGARAGGAGQPLLHWADLEDGASGGGAT 171

Query: 144  ----LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH----RGYDRY 195
                L +L G  S  + RA        AE  +  +++LFGD L +    H     G    
Sbjct: 172  ALAPLTVLLGPDSD-VGRALAAGRPDRAEHLIAPWRELFGDALRLEAVWHGRTGTGPGSL 230

Query: 196  R-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHY 253
            R  ++ V  A    +  V +N   +         DVL A      +  +D   + + + +
Sbjct: 231  RLAARTVGFAADQGVRAVLSNAVRYADPGQGPVADVLDAARRLVPIDPRDPAALDSGERW 290

Query: 254  LKNRSEMVSIFSDLPEA-----------LENTVEIARRCSF-------ILQVHAPILPRF 295
            LK   +M  I   + EA           LE T   A  C         +  +H P  P  
Sbjct: 291  LKGPQDMARIAEKIAEAAGRRRDAAHRLLEETERTAAACLVDPEDHIGLGSIHFP-EPHL 349

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR-QRLDFELNVIARMKFS 354
            +        +  E  LR++  A + +R        GY     R  RL+ EL  I R+ F+
Sbjct: 350  VGAG----HRSAERVLRSRCAAAMVLR--------GYDRDHERWGRLEDELRTIERLGFA 397

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFL VA  +   +   I V   RGSGAGS   + L I   DP+   LL ERFL+  R +
Sbjct: 398  SYFLTVAQVVDDTRALGIRVA-ARGSGAGSFVNHLLGIAHADPVANGLLMERFLSVRRAA 456

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            +PD DID    RR EV R + +++G ERVA +    + + + A+RDVG AL M  ++VDR
Sbjct: 457  LPDIDIDVESARRLEVYRTIFDRFGAERVATVSMPETYRVRHAVRDVGAALGMDPAEVDR 516

Query: 475  LCKLIPN--------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
            L K  P+          A    L A+A + +            RL E+ + L+GL R  +
Sbjct: 517  LAKSFPHIRARDARAALAELPELSAVAAEQK---------RYGRLWELVEALDGLPRGIA 567

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             H  G+++ D  L    P+        P++QF+   +E  GL+K D LG++    +Q S+
Sbjct: 568  MHPCGVLLSDAGLRARTPVVPTSGEGFPMSQFDKDDVEDLGLLKLDVLGVR----MQSSM 623

Query: 587  DFLAQRGVKVDLSLIPFDDHE--------TYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
               A    +V    +  DD E        TY L+ +  TLG FQ+ES G R  L  +QP 
Sbjct: 624  AHAAAEVARVTGRPLDLDDPEVVRPNDPATYDLIRSTETLGCFQIESPGQRDLLGRLQPT 683

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
               D++  +SL+RPGP+  D +  +   ++G++     HP ++  L+ET GV+++ EQ++
Sbjct: 684  SFHDLVVDISLFRPGPVAADMVRPFIEARHGRKPPRYPHPDLEDALRETYGVVVFHEQII 743

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            +I  +++G     AD  RRA+     E   + +  F + A+  G    + +  +E++  F
Sbjct: 744  KILSIMAGCERDLADEARRALSD--PERQGRVRAWFHAEAANRGYRPEVRLRTWEIVEAF 801

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
              YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+  + I
Sbjct: 802  GSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGVLTHDPGMYPK-RLLLADARRRGVPI 860

Query: 817  MPPSVNTPCVDFKV--------------------------GDNRIYYSLAAIKGVGTTTA 850
            +P  VN    D+++                          G      + A   G G+T A
Sbjct: 861  LPLDVNRSGADYRIELVSGDGVSAAGAAGTGPMGVSSTDAGSTAAGSTAADSVGAGSTGA 920

Query: 851  -----------RHIMEA-----SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
                         I EA     +A +P+ SL+D   R       R V E L   GALD F
Sbjct: 921  GFGVRLALSDVHGISEAETGRIAAGQPYSSLQDLWRRAHP---GRPVAERLAQVGALDAF 977

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            G SR  LL  +  + +  +   ++ T + +   A      +           N   R   
Sbjct: 978  GTSRRDLLLQIAELHRQQRGARRDGTGEGQLPLAE-----TAPPAPAGLPDLNPEERLGA 1032

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E  +LG   S H +  ++  L ++G    +       G  + +A    + Q    R G R
Sbjct: 1033 ELGILGMDVSRHLMGDHRAFLEELGAVPAKRLRDARHGETVLVAGAKAATQTPPIRSGRR 1092

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + + T  +     +  FF
Sbjct: 1093 VIFTTLDDGTGLVDCAFF 1110


>gi|119504394|ref|ZP_01626474.1| Pantoate-beta-alanine ligase [marine gamma proteobacterium HTCC2080]
 gi|119459902|gb|EAW40997.1| Pantoate-beta-alanine ligase [marine gamma proteobacterium HTCC2080]
          Length = 1006

 Score =  324 bits (831), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 282/1034 (27%), Positives = 477/1034 (46%), Gaps = 115/1034 (11%)

Query: 33   LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
            +++ AA    A+AITD  +L   ++    A    I+ IIG + +  + + +++       
Sbjct: 1    MERAAACGYSALAITDECSLAGVVKAHVAAKRCAIKLIIGSEFN--LVEGIRL------- 51

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQSVRI---------CLSWLQEIGTE 142
                   V L    E Y  L  L+SR      +G+ + R+         CL         
Sbjct: 52   -------VALAPNREAYAELSGLISRSRRRSPKGEYTTRLRDVIFHLKRCL--------- 95

Query: 143  GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQVV 201
             +I + G S   +         Q+A        +L   R ++   R  G D  R   Q  
Sbjct: 96   -IIWIPGDSDHEMG-----TGQQLA--------RLCPGRTWIGSSRLLGNDEMRRFRQRW 141

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEM 260
             LA    LPLVA  +    S      HDVL A+ H+T VS+    R+     +L+   ++
Sbjct: 142  DLAQKLNLPLVACGDVRMHSASRKRLHDVLTALNHNTTVSKLGLRRLANSQQHLRTLEKL 201

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
            + ++   P  +  T+ I+++C F L       P    +E     ++    LR +   G  
Sbjct: 202  LPLYP--PSLIGETLRISQQCQFNLDELRYEYP----EEVIPTGQDANTYLREQVALGAA 255

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
             R   G  +        + R+  EL +I+ + +  YFL V D +++A++  I +  GRGS
Sbjct: 256  QRWPNGVPSA------VQSRIQHELVLISELDYEYYFLTVYDLVRFARERQI-LCQGRGS 308

Query: 381  GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
             A SV  Y L IT+++P + +LLFERF++ +R   PD D+DF  +RR+EVI+Y+  KY  
Sbjct: 309  AANSVVCYCLHITEVNPEQVNLLFERFISRERDEPPDIDVDFEHERREEVIQYIYRKYTR 368

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS---- 496
             R A   T  + ++++A+RDVG+AL +    V+ L K          SL     +     
Sbjct: 369  RRAALAATVITYRSRSAVRDVGKALGLDPILVEDLAK----------SLAWWNREGELRQ 418

Query: 497  RFREARLADPS--VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
            RF +  +  P       L++ Q++ G  RH S H  G VI   P+S LVP+      +  
Sbjct: 419  RFEQQGMGMPGKQAQIFLDLVQEILGFPRHLSQHVGGFVISRGPISNLVPVENASMDERT 478

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-LSLIPFDDHETYHLLT 613
            V Q++ + IE  GL+K D L L  L+ ++K+L  + +   ++  +  IP +D  TY +L 
Sbjct: 479  VIQWDKEDIEALGLLKVDVLALGMLSAIRKTLALVHRENPQIKRIQDIPREDQATYKMLQ 538

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKI 671
            +  +LG+FQ+ES      L  ++P C  D++  +++ RPGPI  D +  Y  RK+G E +
Sbjct: 539  SADSLGVFQIESRAQMSMLPRLKPACFYDLVIEIAIVRPGPIQGDMVHPYLRRKHGLEAV 598

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM---GKKIKEEMDKQ 728
               +  I  +L+ T GV I+QEQV+++A + +G++  EAD LRRA+   G+  K  +   
Sbjct: 599  TYPNDAIKSVLEPTLGVPIFQEQVIRLAMVAAGFTGGEADALRRAITNWGRNSK--LLTF 656

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +++   G  + G S   +  +F+ +  F  YGF +SH+A++A+++Y +AW+K HYP  F 
Sbjct: 657  EKKLKDGMRERGYSTEFSNRLFDQIKGFGGYGFPESHSASFALLAYVSAWLKCHYPTAFY 716

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDNRIYYSLAAI 842
               +  +        +  QDA++  + ++P  VN    + ++      G   I   L  I
Sbjct: 717  IGLLNSQPMGFYTPSQLIQDAQRHGVTVLPADVNHSEWNHQLLSQTDQGQPPIRLGLRLI 776

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KG+       I +A    PF S+ D   R    +L++  +E L  A AL      R Q  
Sbjct: 777  KGLNKHAGHRIADAQRQMPFKSISDLRGRA---QLDKGDMEVLASADALKSVSGHRHQSQ 833

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV-ENSSVRFENEQRVLGF 961
              +  +Q  +  +   R   +E     +    SD I L   SV EN    +++     G 
Sbjct: 834  WQIMALQTPSPLL---RDTPYET----KPEDLSDHIELPTPSVAENVMADYQST----GV 882

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVT 1019
                HPL + +        + Y E  A   GNN  +R+A +V  +Q+  T  G  + ++T
Sbjct: 883  TLRDHPLALLREQSPFNQCRKYSELSAL--GNNRFVRIAGIVTCRQRPGTASG--VVFLT 938

Query: 1020 FSEPAKEYEANFFP 1033
              + +  +    +P
Sbjct: 939  LEDESGNHNVVVWP 952


>gi|294675695|ref|YP_003576310.1| error-prone DNA polymerase [Rhodobacter capsulatus SB 1003]
 gi|294474515|gb|ADE83903.1| error-prone DNA polymerase [Rhodobacter capsulatus SB 1003]
          Length = 1116

 Score =  324 bits (831), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 288/1048 (27%), Positives = 472/1048 (45%), Gaps = 96/1048 (9%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSALEFS 59
            + S ++  L V S+++ L GA     ++ + A     AIAITD N+L      FSAL+  
Sbjct: 10   QNSTAYAELCVTSNFTFLTGASHPEELVARAAELGLAAIAITDRNSLAGVVRAFSALKTL 69

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP-FPTVPSIVL---------------LV 103
            ++   A ++     + D   + +L        P  P +P +++               L 
Sbjct: 70   RQETEA-LRIRSASRTDPSSRQSLDPAAPLPRPETPDLPRLIIGTRLALRDCATEFLALP 128

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
            +    Y+RL +L++    L + +     C   L +        L  G +G I  A     
Sbjct: 129  TDRPAYERLSQLLT----LGKRRAGKGDCALNLDD--------LVAGGAGLILIALPPPE 176

Query: 164  SQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
              +A   L   ++ F  ++++    R+ G D+        LA     P+VA  + L    
Sbjct: 177  LALALAPLHRLQRQFPGQVFLGAAPRYDGTDQAWFRGCADLALRASTPMVAVGDVLMHRA 236

Query: 223  EDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
                  DVL  + A  T+ +   R     +  LK  +EM  +F   P A+  T+EIA RC
Sbjct: 237  ARRPLADVLTCLRAGLTIDAIGTRALPNAERRLKGPAEMARLFRHHPAAIRRTLEIAARC 296

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            +F L   +   P       +D  +  +  L   A  GL  R  QGA      ++   Q L
Sbjct: 297  AFDLAELSYDYP------GEDDTEPPQARLERLAQEGLARRYPQGA------SERVHQLL 344

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
              EL ++  + ++ YFL V D +Q+A+   I +  GRGS A S+  Y L ITD+ P    
Sbjct: 345  AKELGLVGELGYAPYFLTVQDIVQFARSRGI-LCQGRGSAANSILCYLLGITDVSPDMIG 403

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            ++FERF++  R   PD D+DF  +RR+EVI+++  KYG +R     T    + +AA+R+V
Sbjct: 404  MVFERFISRHRGEPPDIDVDFEHERREEVIQWIYEKYGRDRAGLCATVIHFRTRAAIREV 463

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL---LEISQKL 518
            G+ + +       L   I       +S +  AD +R RE  L +P   RL   + +  ++
Sbjct: 464  GKVMGLSADVTAALAGQIWG-----LSNRG-ADPARLREIGL-NPEDRRLALTIRLISEI 516

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
             G  RH S H  G VI    L  L P+           +++   I+  G++K D L L  
Sbjct: 517  IGFPRHLSQHVGGFVITRGRLDALCPIENAAMEGRTCIEWDKDDIDALGILKVDVLSLGM 576

Query: 579  LTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT L+KS D L + +G+++DL+ +P +D  TY +LT    +G+FQ+ES      L  M+P
Sbjct: 577  LTCLRKSFDLLERHKGLRLDLAKVPQEDPATYAMLTRADAVGVFQVESRAQMNFLPRMKP 636

Query: 638  DCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
                D++  V++ RPGPI   +V  Y  R+ G E      P +  +  +T GV ++QEQ 
Sbjct: 637  ATFYDLVIEVAIVRPGPIQGGMVKPYIRRRQGLEAPEPFGPALAAVTAKTLGVPLFQEQA 696

Query: 696  MQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            MQIA + +GYS  EAD LRR++   +    +   ++RF+SG ++ G    +A   F  + 
Sbjct: 697  MQIAVVGAGYSAEEADQLRRSLASFRRMGTIGAHRDRFVSGMTERGYPLAVAEACFAQIE 756

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FADYGF +SHAAA+A+++Y ++W+K H+P  F  A +  +        +  +D R+  +
Sbjct: 757  GFADYGFPESHAAAFAMLTYVSSWLKCHHPEIFACALLNSQPMGFYAPAQIVRDLREHGV 816

Query: 815  QIMPPSVNTPCVDFKV---GDNRIYYSLA--AIKGVGTTTARHIMEASADKPFDSLEDFC 869
            ++ P  VN    D  +    D R+   L    IKG     A  I+ A  +  +  +E   
Sbjct: 817  EVRPICVNRSDWDNALERRADGRLALRLGFRQIKGFRAEDAGWIVAARGNG-YPDVESLW 875

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             R     L    LE L  A A    G +R   L ++  I          R  K   +FA+
Sbjct: 876  LRAG---LLPSPLERLAEADAFAGLGLTRRDALWAVRAI----------RAPKPLPLFAN 922

Query: 930  E---KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY--E 984
                +G     +TL    +    V    +   L      HP+++ +P     G+ G    
Sbjct: 923  PLDGEGGIEPAVTLPPMHLGEEVV---EDYIALRLTLRAHPMELLRP-----GLPGLTCH 974

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + + T       +  +V+++Q+  T  G
Sbjct: 975  DRLVTAPLQRTAVCGLVITRQRPGTASG 1002


>gi|159046536|ref|YP_001542206.1| DNA polymerase III, alpha subunit [Dinoroseobacter shibae DFL 12]
 gi|157914295|gb|ABV95725.1| DNA polymerase III, alpha subunit [Dinoroseobacter shibae DFL 12]
          Length = 1116

 Score =  324 bits (831), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 286/1068 (26%), Positives = 473/1068 (44%), Gaps = 128/1068 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSAL-EFSQ-- 60
             +  L V S+++ L GA     ++ + A     AIAITD N++      FSAL E ++  
Sbjct: 3    GYAELCVTSNFTFLTGASHPEELVTRAAELGLKAIAITDRNSVAGVVRAFSALKELARLR 62

Query: 61   ---KACAAGIQ--PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ----- 110
               +A + G +  P++  +   D      M +      P +P  ++L     G +     
Sbjct: 63   EEARAASDGAEAGPVVRSRQVTDHSSRQTMQHMPAGDAPRIPPDMVLPKLIPGARIVLTD 122

Query: 111  -------------------RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151
                               RL+ L  R     +   + +  L W      EG++++    
Sbjct: 123  SPVDWLALPADIAAWSRLTRLLSLGKRRATKGECHLTRKDLLDW-----GEGMVLI---- 173

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELP 210
            + P D       + +++ R +   ++F  + ++    R+ G D  R  Q+ ++A    LP
Sbjct: 174  ALPPDPMEHPARASLSDLRHML--RIFPGQCFLGAAPRYDGRDPTRLDQLARIAQDTGLP 231

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPE 269
            LVA    +          DVL  +     +      R+T  +H LK+ +EM  +F   P 
Sbjct: 232  LVALGEVMMHRSSRRPLADVLTCLREGCTIDTIGERRLTNGEHRLKSPAEMARMFHRYPA 291

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA----------GL 319
            A+  T+EIA RC+F L               DD++ +  +E R+   A          GL
Sbjct: 292  AIRRTLEIADRCAFRL---------------DDLRYQYPDEARDGEPAQARLERLSREGL 336

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
              R  +G  A+         R+D EL +I  M ++ YFL V D + +A+   I +  GRG
Sbjct: 337  HWRYPEGPPAR------IVTRVDKELKLIGEMGYAPYFLTVHDIVAFARSKGI-LCQGRG 389

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            S A SV  Y L +T++ P   +L+FERF++ +R   PD D+DF  +RR+EVI+++  +YG
Sbjct: 390  SAANSVVCYLLGVTEVPPESITLIFERFISKERGEPPDIDVDFEHERREEVIQWIYEQYG 449

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
              R     T    +++AA+R+VG+ + +    V RL   I        S  A  +D R R
Sbjct: 450  RHRAGLTATVIHFRSRAAIREVGKVMGLSQDVVARLSGQIWG-----WSSSAPGED-RMR 503

Query: 500  EARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
            +A +  AD  V    ++  ++ G  RH S H  G VI    L +L P+      D  V +
Sbjct: 504  DAGIDPADGRVALAAKLIGEIIGFPRHLSQHVGGFVITHGRLDELCPIENAAMEDRTVIE 563

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKG 616
            ++   I+  GL+K D L L  LT ++K+   L   R +++ L+ +P +D   Y +L    
Sbjct: 564  WDKDDIDALGLLKVDVLALGMLTCIRKAFGLLDDHRHLQLTLANVPPEDPVVYDMLCKAD 623

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI 674
             +G+FQ+ES      L  MQP    D++  V++ RPGPI   +V+   NR+ GKEK+  +
Sbjct: 624  AVGVFQVESRAQLNFLPRMQPRKFYDLVCEVAIVRPGPIQGGMVHPFINRRQGKEKVEDL 683

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFI 733
             P +  +L  T GV ++QEQ MQIA + +G+S +EAD LRR++   K    +   +ERFI
Sbjct: 684  GPAMMEVLGRTYGVPLFQEQAMQIAVVAAGFSAAEADRLRRSLATFKRMGTIGAFRERFI 743

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            SG          A   F  +  F  YGF +SHAA++A + Y +AW+K H+P  F  A + 
Sbjct: 744  SGMLARSYEAGFAERCFAQIEGFGSYGFPESHAASFARLVYISAWLKRHHPAVFTCALLN 803

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNRIYYSLA--AIKGVGTT 848
             +        +  +DAR+  ++I   SVN    D  +   GD  +   L    IKG+   
Sbjct: 804  SQPMGFYAPAQLVRDAREHGVEIRAISVNHSAWDCTLEPRGDGALALRLGFRQIKGMREE 863

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I EA+    +  +E    R   +      LE L    A    G +R   L +   +
Sbjct: 864  DANWI-EAARGNGYPDVEGLWRRAGVRP---DALERLAEGDAFASLGLNRRDALWAARAL 919

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
            +           N      A  +G    ++ L   ++    +    +   L      HP+
Sbjct: 920  RG---------PNPLPLFGADGEGGAEPEVALPAMTLGQEVI---EDYLALRLSLRAHPM 967

Query: 969  DVYKPILRKMGIKGYEESVATIR----GNNIRLAAMVVSKQQKKTRKG 1012
            ++ +P L         ES+   R       + +  +V+++Q+  T  G
Sbjct: 968  ELLRPRL--------PESLPHERLDRATGRVTVTGLVITRQRPGTASG 1007


>gi|167579726|ref|ZP_02372600.1| error-prone DNA polymerase [Burkholderia thailandensis TXDOH]
          Length = 925

 Score =  324 bits (830), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 249/846 (29%), Positives = 394/846 (46%), Gaps = 77/846 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++        IAITD  +L  A      A    + 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAKKHGYRGIAITDECSLAGAPRMHVAAKEHELP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G   D+   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFDVTPDD----VAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            R+    L     E + +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 124 YRLTPRMLAAPPPEFIHLRGVPDCFAILVPTYPARADVLDAQLAWFGALFGERARLGLVQ 183

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D     QV        + +VA  +    +       D + A+     + +     
Sbjct: 184 LQRALDGAHREQVRAAGERRGMRIVALGDVTMHTRSCKPLQDTMTAIRLGMPIGECGH-A 242

Query: 248 VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           + P  + +L+ R  +  +F    +AL  T  +   C F L               D+++ 
Sbjct: 243 LAPNAEQHLRTRQRIAQLFPA--DALAQTCRMLDACHFSL---------------DELRY 285

Query: 306 EEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
           E  +E           L  +  AG   R   G        +  RQR+ FEL +IA +K+ 
Sbjct: 286 EYPHEIVPAGHTPTSYLAQETWAGARRRYPDGV------PEAVRQRIGFELALIADLKYE 339

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFL V D +++A+  +I +  GRGS A SV  Y L +T+++P + +LLFERF++ +R  
Sbjct: 340 PYFLTVYDIVEYARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFISRERGE 398

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R
Sbjct: 399 PPDIDVDFEHQRREEVIQYLYGKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVER 458

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRL---LEISQKLEGLYRHAST 527
           + K                D SR   AR A    DP V  +    +++ +L    RH S 
Sbjct: 459 VAK-----------EHRWFDGSRDLLARFASVGLDPDVPLIRTWAKLAARLLNFPRHLSQ 507

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ D
Sbjct: 508 HSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFD 567

Query: 588 FL-AQRGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            + A RG  +       L  IP DD  TY ++    T+G+FQ+ES      L  ++P   
Sbjct: 568 MITAWRGPPLPDGRPFRLEHIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRGY 627

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKN---GKEKIVSIHP--LIDPMLKETQGVIIYQE 693
            D++  VS+ RPGPI    V  Y  R+    G+ +    +P   ++ +L+ T G+ I+QE
Sbjct: 628 YDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEVEGEITYPSEALERVLERTLGIPIFQE 687

Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           QVMQIA + +G++  EAD LRRAM   K K ++ K   R + G  + G S   A  IFE 
Sbjct: 688 QVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHRRIVDGMLERGYSCEFAEQIFEQ 747

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++ 
Sbjct: 748 IKGFGEYGFPESHAASFAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPAQLVQDAKRH 807

Query: 813 NIQIMP 818
            + ++P
Sbjct: 808 GVTVLP 813


>gi|332171749|gb|AEE21003.1| DNA polymerase III, alpha subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1030

 Score =  324 bits (830), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 240/846 (28%), Positives = 414/846 (48%), Gaps = 60/846 (7%)

Query: 174 FKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
             K +  RL++  QRH   D +  ++    L+    +P+ A    L  S E YE   VL 
Sbjct: 144 LNKNYPARLWLGYQRHLLSDEHLYQAHCETLSEEFSIPITACGGVLMHSPERYELLCVLN 203

Query: 233 AVAHSTVVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-----Q 286
           ++     +    ++     +  L+  S++  ++    + L  +  IA  C+F L     Q
Sbjct: 204 SIHKVNNIEHSVEKIPQNAERSLRPISKLKRLYP--AKWLAESASIANLCTFDLSELSYQ 261

Query: 287 VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
             A ++P+              + LR+    G+ +R  +GA      +   R+ +  EL 
Sbjct: 262 YPAELIPK---------GATPTSHLRDLVKRGMSIRFPEGA------SFAIRRIIAKELK 306

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
           +I  +K+  +FL ++D +Q+AK  +I +  GRGS A SV  Y L IT +DP + S+LFER
Sbjct: 307 LIEALKYEFFFLTISDIVQYAKAQHI-LYQGRGSAANSVVCYCLEITAVDPRQISVLFER 365

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           F++ +R   PD D+DF  +RR+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL 
Sbjct: 366 FISKERNEPPDIDVDFEHERREEVIQYIYKKYGRERTAIAATVISYRQKSAIRDVGKALG 425

Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR---LLEISQKLEGLYR 523
           +  SQ+D   K I N     ++ QA     +  E  L +PS  +    + +  +++G  R
Sbjct: 426 IHESQLDFFIKNI-NRRDKALNWQA-----QISELGL-NPSSGKGKHFIHLVNEIKGFPR 478

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
           H S H  G VI   PL QLVP+     ++  V Q++   +E  GL+K D L L  LT ++
Sbjct: 479 HLSQHVGGFVISANPLYQLVPIENASMAERSVIQWDKDDLESLGLLKVDVLALGMLTAIR 538

Query: 584 KSLDFLAQRGVKV----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
           K+ D + Q   K     D++ +P  D + Y ++    T+G+FQ+ES      L  ++P C
Sbjct: 539 KTFDLIKQHHNKTISIADITRLP-SDPDVYAMIQKADTVGVFQIESRAQMTMLPRLRPKC 597

Query: 640 IEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             D++  +++ RPGPI   +V+    R++G E +      ++ +L  T GV I+QEQV++
Sbjct: 598 FYDLVIQIAIVRPGPIQGDMVHPFLKRRDGLEPVEYPSKEVESVLSRTMGVPIFQEQVIK 657

Query: 698 IAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           IA + +G+S  EAD LRRAM   K   E+ K K++ I G    G     A  +++ +  F
Sbjct: 658 IAMVAAGFSGGEADQLRRAMASWKKTGELIKFKDKLIKGMLARGYKVQFAEQLYKQICGF 717

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            +YGF +SH+A+++V++Y ++W+K +YP  F    +           +  QDA++ +I++
Sbjct: 718 GEYGFPESHSASFSVLAYVSSWLKYYYPESFYCGLLNSWPMGFYTPDQLIQDAKRHHIEV 777

Query: 817 MPPSVNTPCVD--FKVGDNRIYYSLA--AIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
           +P  +N    D   +  DN++   L    IKG+        +++  ++ +  L    +++
Sbjct: 778 LPVCINASYYDHIIETADNQLALRLGFRLIKGLSRREIEEFVDSRPNQGYSEL----AQL 833

Query: 873 DSKKLNRRVLESLVFAGALDCFGYSR----MQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
               L +  LE+L  A A      +R      L+ S  ++  + Q    N  N  +    
Sbjct: 834 KESGLTKASLEALASANAFSSLSDNRYTAKWSLMDSQSDLPLFKQLTMDNDFNPEQ---P 890

Query: 929 HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD--VYKPILRKMGIKGYEES 986
            E     +       S+ +  +R  +E  +LG Y     LD   +K +++ +G+    +S
Sbjct: 891 SEFSALLEDYRTTGMSLHSHPIRLLSEANLLGHYTPAAQLDTITHKSVIKVVGLVKGRQS 950

Query: 987 VATIRG 992
             T  G
Sbjct: 951 PGTASG 956


>gi|300932918|ref|ZP_07148174.1| error-prone DNA polymerase [Corynebacterium resistens DSM 45100]
          Length = 1277

 Score =  324 bits (830), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 207/609 (33%), Positives = 313/609 (51%), Gaps = 57/609 (9%)

Query: 249 TPDHYLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQVHAPILPRF---------- 295
           T   +L++R EM+ +  D   L  A++NTV +A +C+F L + AP LPR+          
Sbjct: 375 TGGSWLRSRDEMMQLAGDCDWLHAAIDNTVTLAEQCAFTLNLIAPNLPRYPVPTGHTEMS 434

Query: 296 -----IEKECDDI----QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR---QRLDF 343
                +EK   +      K+EE        AG  V LA G+ A+  +        + +D 
Sbjct: 435 WLKALVEKGGAERYGRRPKKEECSAETNQQAG-AVGLATGSAARKANTAANAKAWETIDR 493

Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
           EL +I ++ F GYFLIV D + +   N+I    GRGS A S   +AL IT +D +   LL
Sbjct: 494 ELGIIEQLGFPGYFLIVYDIVNFCHTNDI-FCQGRGSAANSAVCFALGITTVDAVAAGLL 552

Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           FERFL+P+R   PD D+D    RR+E I+YV  +YG +  AQ+    + + K ALRD  R
Sbjct: 553 FERFLSPERDGPPDIDLDIESGRREEAIQYVYQRYGRDNAAQVANVITYRRKGALRDAAR 612

Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
           AL     QVD   + I  +P  P  LQ +AD                      +L    R
Sbjct: 613 ALGYAPGQVDAWTRGI-EEP--PELLQHVAD----------------------QLRDHPR 647

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
           H   H+ G+VI DRP++ +VP       +  V Q++       GL+KFD LGL  L  + 
Sbjct: 648 HLGIHSGGMVICDRPIADVVPTEWARMENRSVVQWDKDDCAAVGLVKFDLLGLGMLEAIH 707

Query: 584 KSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            ++D + + RG +V+L  +   + E Y +L     +G+FQ+ES      L  ++P    D
Sbjct: 708 HAVDQVEKHRGRRVELWRLDPVETEVYAMLAKADAIGVFQVESRAQMNTLPRLKPRTFYD 767

Query: 643 IIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
           ++  V+L RPGPI    V+    R+NG E +   HP ++P L  T GV ++QEQ+MQ+  
Sbjct: 768 LVVQVALIRPGPIQGGSVHPFIRRRNGLEPVTFDHPSLEPALTRTLGVPLFQEQLMQVVV 827

Query: 701 LLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFAD 758
             +G++ +EAD LRRAMG K+    M   +ERF  G  + NGI+  +A  +++ +  FA 
Sbjct: 828 DAAGFTAAEADSLRRAMGSKRSPRRMAALRERFYDGLERTNGITGEVADRLWDKIVAFAS 887

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           YGF +SHA ++A + Y +AW K HYP EF  A +  +       +    DAR+  ++I+P
Sbjct: 888 YGFPESHAQSFASLVYYSAWFKYHYPAEFCVALLRAQPMGFYSPQSLIADARRHGVKILP 947

Query: 819 PSVNTPCVD 827
             +N   V+
Sbjct: 948 VDINASGVE 956


>gi|118589570|ref|ZP_01546975.1| DNA polymerase III, alpha subunit, putative [Stappia aggregata IAM
            12614]
 gi|118437656|gb|EAV44292.1| DNA polymerase III, alpha subunit, putative [Stappia aggregata IAM
            12614]
          Length = 1129

 Score =  323 bits (829), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 282/1045 (26%), Positives = 465/1045 (44%), Gaps = 88/1045 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSAL-EFSQKAC 63
            +  L V S++S L GA     ++ + A     AIAITD N+L      +SAL E  + A 
Sbjct: 17   YAELAVTSNFSFLRGASHPEELVTRAAMLNLDAIAITDRNSLAGVVRAYSALKEIKRAAA 76

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFP---TVPSIVL---------------LVST 105
              G+Q  I     ID     +       P P    +P +++               L + 
Sbjct: 77   EEGVQ--IRSHSQIDTSSRKETNTSPPLPAPQTLKLPRLIVGARLCLQDSPLHWVALPTD 134

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNS 163
               Y+RL +L++    L + +     C     ++    +G+I++    + P         
Sbjct: 135  RAAYERLSQLLT----LGKRRAEKGECHLNFADLMNACKGMILI----ALPQPEMARETI 186

Query: 164  SQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
             + A+  +   ++     +++    R+ G D+       + A++   P+VA  + +    
Sbjct: 187  CETAKDHIHRLRQEAPGHVFLGAAPRYDGTDQAWFRTCARAAHSLAAPMVAVGDVMMHHA 246

Query: 223  EDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
                  DVL  +     +     R     +  LK   +M  +F   P AL  T+EIA RC
Sbjct: 247  GRRRLADVLTCLREGCTIDDIGTRALPNGERRLKAPEDMARLFRHHPAALRRTLEIATRC 306

Query: 282  SFILQVHAPILPRFIEKECDDIQKEE--ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
            SF L   +   P       D+I   E  +  L      GLE R   G      HA    +
Sbjct: 307  SFDLSELSYEYP-------DEITGNEPPQERLERLTYEGLERRYPAGVPD---HALALAE 356

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            +   EL +I ++ F+ YFL V D I++A+  NI +  GRGS A S+  YAL ITD+ P  
Sbjct: 357  K---ELKLIRKLAFAAYFLTVHDIIRFARSKNI-LCQGRGSAANSIICYALGITDVGPET 412

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
             +++ ERF++  R   PD D+DF  +RR+EVI+YV  KYG  R     T    + +AA+R
Sbjct: 413  ITMVSERFISEHRGEPPDIDVDFEHERREEVIQYVYEKYGRHRAGLCATVIHFRTRAAIR 472

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA--RLADPSVDRLLEISQK 517
            +VG+ + +       L   I        S     +++R RE    L +P V + +E+ ++
Sbjct: 473  EVGKVMGLNADVTAALAGQIWG------SSSKGPEETRMREIGLDLDNPRVRQTIELIRE 526

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            + G  RH S H  G VI    L  L P+      +  V +++   I+  G++K D L L 
Sbjct: 527  IIGFPRHLSQHVGGFVITQGRLDALCPIENAAMENRTVIEWDKDDIDALGILKVDLLSLG 586

Query: 578  TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT ++K  + +    G ++ L  +P  D +TY +L     +G+FQ+ES      L  M+
Sbjct: 587  MLTCIRKCFELIDTHHGQELTLGTVPQADKKTYDMLCVADAIGVFQVESRAQMNFLPRMR 646

Query: 637  PDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
            P    D++  V++ RPGPI   +V  Y NR+ G+EK+      ++ +L +T GV ++QEQ
Sbjct: 647  PREFYDLVIEVAIVRPGPIQGGMVHPYINRRQGREKVTFPSKALEEVLGKTLGVPLFQEQ 706

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
             MQIA + +G++ SEAD LRR+M   +    + + K++FISG  + G     A N F  +
Sbjct: 707  AMQIAVVAAGFTPSEADKLRRSMATFRRMGTIGQLKDKFISGMLERGYELEFAQNCFGQI 766

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              F +YGF +SHAAA+A+++Y +A++K H+P EF  A +  +        +  +DAR+  
Sbjct: 767  EGFGEYGFPESHAAAFAMLAYVSAYLKCHFPAEFACALLNAQPMGFYAPAQIVRDAREHQ 826

Query: 814  IQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
            +++ P  VNT   D  +     G   +      IKG+    A  I+ A  +  +   E  
Sbjct: 827  VEVRPVCVNTSLWDNTLERRSDGALALRLGFRQIKGLREEDAAWIVAARGNG-YPDTETL 885

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              R          LE L  A A    G SR   L  +  I+        N     E IF 
Sbjct: 886  WLRTGVMPTT---LERLAEADAFAGMGLSRRAALWQVKTIRSPKPLPLFNDPIDGEAIF- 941

Query: 929  HEKGTFSDKITLEKFSVENS-SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
             E       + L +  VE+  S R              HP+++ +P +  +       ++
Sbjct: 942  -EPDVLLPTMHLGQEVVEDYLSTRLT---------LRAHPMELLRPHIPHLTPHDRLAAL 991

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKG 1012
                   + +  +V+++Q+  T  G
Sbjct: 992  TPREARRVSVCGLVITRQRPGTASG 1016


>gi|121997266|ref|YP_001002053.1| DNA polymerase III subunit alpha [Halorhodospira halophila SL1]
 gi|121588671|gb|ABM61251.1| DNA polymerase III, alpha subunit [Halorhodospira halophila SL1]
          Length = 1044

 Score =  323 bits (829), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 285/1044 (27%), Positives = 454/1044 (43%), Gaps = 109/1044 (10%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SP++  L   S+++   GA     ++ + A     A+AITD  ++  A+   Q A + G+
Sbjct: 9    SPAYAELHCLSAFTFRRGASQPEELVARAAQLDYHALAITDECSVAGAVRAWQAARSHGL 68

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
              I+G +L     D               P +VLL  T + Y +L  L+S +      K 
Sbjct: 69   HLIVGTELR--PADG--------------PRVVLLAPTRQAYGQLCALIS-LARGRAAKG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +    L     + L +L       I  A     ++  E +   F + F  R Y+ ++
Sbjct: 112  GYHLTREDLDSGAPDCLGLL-------IPDAPHQEGTET-EAQTRWFARRFAGRGYLAVE 163

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA-HDVLMAVAHSTVVSQKDRP 246
               G D     ++++                 +      A HD L A+ H   V++    
Sbjct: 164  LLGGPDDAARCRMLEARAAAAGLPAVAATGAEMHTRGRRALHDTLTAIRHGRPVAEVTAH 223

Query: 247  RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              +  +H+L+ R  +   +      L  +  IA RC+F L       P  +  E      
Sbjct: 224  LASNGEHHLRRRPALAERYPH--HLLAQSTAIADRCTFSLDELRYEYPEEVVPE----GT 277

Query: 306  EEENELRNKAVAGLEVRLAQG---AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 LR     G   R   G   A+  GY         + EL +IA + +  YFL V D
Sbjct: 278  TPTAHLRQLVETGARRRYPDGVPAAVQAGY---------ERELAIIAELGYEHYFLTVHD 328

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             + +A+   I +  GRGS A SV  + L IT++DP   S+LFERF++ +R   PD D+DF
Sbjct: 329  LVAFARGRGI-LCQGRGSAANSVVCFCLGITEVDPAHQSVLFERFVSRERGEPPDIDVDF 387

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK-LIPN 481
               RR+EVI+Y+  +YG  R A   T  + + ++A+RDV +AL +    V+RL K L P 
Sbjct: 388  EHHRREEVIQYIYQRYGRHRAALAATVIAYRPRSAVRDVAKALGLERESVERLAKGLQPW 447

Query: 482  DPAHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            D        + A+D + R+A L    P   RL  ++ +L G  RH S H  G VI   P+
Sbjct: 448  D-------HSAANDEQLRQAGLNPDGPIARRLRILAGELLGFPRHLSQHVGGFVIARCPI 500

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
            ++LVP+         V Q++   +E  GL+K D L L  L++++++ + +   RG    L
Sbjct: 501  TELVPVEPAAMDGRTVIQWDKDDLEALGLLKVDVLALGMLSVIRRAFELIHHWRGHAWTL 560

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
            + +P  D  TY ++    TLG+FQ+ES      L  M+P C  D++  +S+ RPGPI  D
Sbjct: 561  ATLPPADPATYAMIQRADTLGVFQIESRAQMAMLPRMRPRCFYDLVIEISIVRPGPIQGD 620

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+ G E +      +  +L+ T GV I+QEQ M++A + +G++  EAD LRR+
Sbjct: 621  MVHPYLRRREGSEPVDYPSEEVRGVLERTLGVPIFQEQAMELAVVAAGFTPDEADRLRRS 680

Query: 717  MGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M   + K  +   +ER I G  + G S   A  ++  +  F +YGF +SHAA++A++ Y 
Sbjct: 681  MAAWRKKGGLAPLRERLIEGMRERGYSSAYAERLYRQIEGFGEYGFPESHAASFALLVYA 740

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV---NTPCV------ 826
            +AW+K H P  F AA +  +        +  +D R+ ++ + P  V      C       
Sbjct: 741  SAWLKCHEPAAFAAALLNSQPMGFYAPAQIIRDTREHDVAVRPVDVRFSEPACTLEPPQP 800

Query: 827  -DFKVGDNR---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
             D   G      +   L  I+G+ T  A  I  A +  PF  + D   R     L+R   
Sbjct: 801  PDSPSGAGSQPALRLGLNQIRGLSTAGAERIAAARSRAPFTGVNDLKRRA---HLSR--- 854

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
                     D    +R   L+ +   ++ A W           + A E          E 
Sbjct: 855  --------ADIHALARADALRGIAGHRRAASWA---------ALGADEGTALIPPPPAEA 897

Query: 943  FSVENSSVRFENEQRVL------GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
                 +  R    Q VL      GF    HPL   +  LR    +   E      G +IR
Sbjct: 898  GRPSLAPAR--ESQAVLADYASTGFTLRRHPLAFLRRQLRARRYRSAAELATAEDGRSIR 955

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTF 1020
             A +V+++Q    R GS  G +TF
Sbjct: 956  AAGLVINRQ----RPGS-AGGITF 974


>gi|254500463|ref|ZP_05112614.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia
            alexandrii DFL-11]
 gi|222436534|gb|EEE43213.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia
            alexandrii DFL-11]
          Length = 1130

 Score =  323 bits (828), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 259/1041 (24%), Positives = 469/1041 (45%), Gaps = 88/1041 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P++  L   +++S L GA     ++ + A  Q  A+ I D N++   +     A  
Sbjct: 7    ITEPPAYAELCAATNFSFLHGASHPEELVLQGAHLQLAALGICDRNSMAGVVRAHMAAKE 66

Query: 65   AGIQPIIGCQLD-IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             G++ + GC+L  +D + +L    + +  + T+                    +R+  + 
Sbjct: 67   TGLKFVPGCRLAFLDGKPDLLYWPKDRGAYGTL--------------------TRLLTIG 106

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
              +     C   L ++      +L  GS   +             K L   K  F   L 
Sbjct: 107  NRRAEKGACHLTLDDVS-----LLCPGSPAALILPPGLPDPDPVLKVLEKLKSRFEGTLR 161

Query: 184  VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVS 241
            + +  HR   DR R +    + +T  +P++A N++L+ + +     DVL  +  H  + +
Sbjct: 162  LAVALHRKAEDRRRLALARNITHTAGVPMLAINDTLYHAPDRRPLQDVLTCIRLHERLET 221

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
               + +   + +LK   E++ +F   P  L  +++I +   F L       P     E  
Sbjct: 222  AGRQLQQNAERHLKPAEEILRLFESDPAPLHESLKILQEVQFSLDDLRYEYPEEPAGESA 281

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              Q E    L    + G + R  +G   K       R  +D EL ++A + ++ YFL V 
Sbjct: 282  SPQAE----LERLTLEGAKRRYPEGVPNK------IRSTIDHELKLVADLDYAPYFLTVY 331

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +++A+   I +  GRGS A SV  + L IT++DP R  LLFERF++P+R   PD D+D
Sbjct: 332  DIVRFARTRGI-LCQGRGSAANSVVCFCLGITEVDPTRADLLFERFISPERREPPDIDVD 390

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EVI+Y+  KYG ER     T  + ++++ALR+VG+   +    +  L   +  
Sbjct: 391  FEHERREEVIQYIYAKYGRERAGLAATVITYRSRSALREVGKVFGLSEDAIASLAGTVWG 450

Query: 482  DPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                     A  ++++ REA L  +DP + ++LE+++ L G  RH S H  G VI    L
Sbjct: 451  ------RASAGTEEAQVREAGLDPSDPLITQMLELARTLIGFPRHLSQHVGGFVITRGRL 504

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
             +++P+      D  V +++   ++  G++K D L L  LT ++K+L  L++  G  + +
Sbjct: 505  DEVIPIQNAAMEDRTVVEWDKDDLDALGILKIDILALGMLTAIRKALTMLSENYGQDLTI 564

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
            S IP ++   Y +L    ++G+FQ+ES      L  ++P+   D++  V++ RPGPI  D
Sbjct: 565  STIPAEEKPVYDMLCRADSVGVFQVESRAQMTMLPRLRPEKFYDLVIEVAIVRPGPIQGD 624

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+ GKE++      ++ +L +T GV ++QEQ M+IA + +G++  EAD LRRA
Sbjct: 625  MVHPYLRRRQGKERVSYPSKELEAVLGKTMGVPLFQEQAMKIAIVAAGFTPGEADKLRRA 684

Query: 717  MGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M   +    +   + + I G +KNG  +  A   F  +  F +YGF +SHAA++A++ Y 
Sbjct: 685  MATFRRVGTIGTFQTKMIEGMAKNGYDRDFAERCFRQIEGFGEYGFPESHAASFALLVYA 744

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----- 830
            ++W+K +YP  F AA +  +        +  +DAR+  + +    +N    D K+     
Sbjct: 745  SSWIKAYYPDVFCAALLNSQPMGFYAPGQLVRDAREHGVDVREVDINLSDWDAKLEPGWQ 804

Query: 831  -----------------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                              D+ +      +KG+       ++    D  +DS+ D   R  
Sbjct: 805  AARHLHPRHREMKEIVRTDHAVRLGFRTVKGLKQDDMDKLIVHRGDG-YDSIRDLWLR-- 861

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
               L+R V+  L  A A    G  R   + +       AQ +E    N+ + +   +   
Sbjct: 862  -SGLSRPVILRLAEADAFRSLGLDRRAAVWA-------AQGLEAG--NQRDRLPLFDVAD 911

Query: 934  FSDKITLEKFSVEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
            F D        +           + + L      HP+   +P L    +          +
Sbjct: 912  FGDLRPEPDADLPPMLPGAHVMADYQSLSLSLKAHPVAFARPALAGQRVVPCMNLPDVRQ 971

Query: 992  GNNIRLAAMVVSKQQKKTRKG 1012
            G  + +A +V+ +Q+  + KG
Sbjct: 972  GRQVSVAGLVLVRQRPGSAKG 992


>gi|255263692|ref|ZP_05343034.1| error-prone DNA polymerase [Thalassiobium sp. R2A62]
 gi|255106027|gb|EET48701.1| error-prone DNA polymerase [Thalassiobium sp. R2A62]
          Length = 1100

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 269/1030 (26%), Positives = 459/1030 (44%), Gaps = 89/1030 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V L + S +S L GA    ++  +  A     + I D N L   +    +A  A I+P+
Sbjct: 27   YVELGLASCFSFLRGASDAVDLASEAWALGYDQLGIADWNTLAGVVRLHTEATKAHIRPL 86

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS--RMYLLDQGKQS 128
            IG ++       + +T +    +P         +  + Y RL  L+S  R Y  D   Q+
Sbjct: 87   IGARI-------VLVTGEAFLAYP---------NDRDAYGRLSTLISKGRRYDPDGVWQA 130

Query: 129  VRICLSWLQEIGTEG----LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
               C   L ++        LI++      P +   F       + RL T + +    LY 
Sbjct: 131  KGACDITLADLAATSDNIQLIVIP-----PRNLDLFARDLTRIQHRLPTCRHVAASYLY- 184

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                  G D  R +Q+  +A    L ++ATN+ L+ +       DV+  +   T V +  
Sbjct: 185  -----HGDDVARLTQIDSIARARGLDMLATNDVLYHAPHRRPLQDVMTCIREKTRVDRAG 239

Query: 245  ---RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                P    + +LK+ +EM  +FS  P A+     +A   +F L      L      E  
Sbjct: 240  YLLEPNA--ERHLKSPAEMQRLFSRWPHAIAAPRVVADAITFALT----DLKYEYPSETL 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                    ELR     G + R   G  AK       R+ ++ EL +I +M  + Y L + 
Sbjct: 294  PPGTTASAELRRLTYLGADDRYPAGLPAK------VRKIIEKELALIDKMDIARYILTID 347

Query: 362  DFIQWAKKNNIP--VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            D +++A+    P  +  GRGS A S   + L IT +DP    +LFERF++ +R   PD D
Sbjct: 348  DIVRFARHEATPPILCQGRGSAANSAVCFCLGITAVDPNEHDVLFERFISEERDEPPDID 407

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EVI+++  KYG +R     T    + ++A+R+VG+ + +       L K +
Sbjct: 408  VDFEHERREEVIQHIYAKYGRDRAGLCATVIHYRPRSAIREVGKVMGLSEDITGALAKTV 467

Query: 480  PNDPAHPVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                    S  +  D+ R RE    L+DP + R + ++Q + G+ RH   H  G ++ +R
Sbjct: 468  WG------SWGSELDEDRARETGVDLSDPRIRRTITVAQMMIGMPRHLGQHVGGFILTER 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKV 596
            PL++ VP+      D    +++   I+  G+ K D L L  LT ++K  D + A  GV  
Sbjct: 522  PLTETVPIGNGAMPDRSFIEWDKDDIDALGIFKIDILALGMLTCIRKCFDLMRAHHGVDY 581

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI- 655
            DL++IP DD  TY +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI 
Sbjct: 582  DLAMIPQDDPATYKMLRRGDSLGVFQVESRAQMNMLPRLRPRVFYDLVIQVAIVRPGPIQ 641

Query: 656  -DNIVVYNNRKNGKEKI--VSIHPLIDP-----MLKETQGVIIYQEQVMQIAQLLSGYSL 707
             D +  Y  R+N +E +      P  DP     +L  T GV I+QEQ M+I+   + +S 
Sbjct: 642  GDMVHPYLRRRNNEEAVEYPQPEPPHDPDELRNILNRTLGVPIFQEQAMKISIEAAEFSP 701

Query: 708  SEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            +EA+ LR+AM   + +  ++K +++ +   ++ G     A   F+ +  F +YGF +SHA
Sbjct: 702  AEANELRKAMATFRSRGTIEKLQDKMVGRMTRRGYDPVFAQRCFDQIKGFGEYGFPESHA 761

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A++A + Y ++W+K HYP  F A  +  +        +  +D R+ + ++    VN    
Sbjct: 762  ASFAKLVYVSSWIKCHYPDVFAAGLLNSQPMGFYAPAQIVRDLREHDCEVREIDVNYSNW 821

Query: 827  DFKVGDNRIYYSL----AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
            D  +      ++L      IKG+    A  IM A  D P+ S  D  +R     +   ++
Sbjct: 822  DNTLEPTADGFALRIGFRQIKGLRADAAHQIM-AGRDAPYTSAADLKTR---SAIGAPII 877

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
              L  A AL   G  R Q L     ++      +      H +  A    T     T E+
Sbjct: 878  RRLAAADALRSMGMDRRQALWDARALRDAP---DLPLFQDHADEGADTPVTLPQMPTCEQ 934

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
               +  + R              HP+   +  +++ G    +    +  G  +++A +V+
Sbjct: 935  VVADYQTTRLS---------LKAHPIAFLRRSMQRQGFIATDVLKQSRNGKRVKMAGIVL 985

Query: 1003 SKQQKKTRKG 1012
             +Q+  + KG
Sbjct: 986  IRQRPGSAKG 995


>gi|114705792|ref|ZP_01438695.1| putative dna polymerase iii alpha chain protein [Fulvimarina pelagi
            HTCC2506]
 gi|114538638|gb|EAU41759.1| putative dna polymerase iii alpha chain protein [Fulvimarina pelagi
            HTCC2506]
          Length = 1189

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 261/957 (27%), Positives = 436/957 (45%), Gaps = 76/957 (7%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC--LSWLQEIGTEGLI-MLTGGS 151
             P ++       G+ RL  L+S   L  ++G+  + +   L W +EI    L  M  G  
Sbjct: 79   TPDVLAYPRNRAGWGRLCRLLSLGNLRAEKGRCELFLTDLLEWGEEINCAVLAPMAIGHG 138

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELP 210
             G I  +     + V    L T +  F DR+ +  +  H G+D+ R +++  LA T   P
Sbjct: 139  EGTIAESEIGKLAAV----LNTLRSAFPDRVRLAARYAHEGFDQRRLARLDDLAKTCRTP 194

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPE 269
            L+ATN  L  + +     DV+ A+     +    R   +  + +LK   E+  +FS  P 
Sbjct: 195  LLATNEPLAHAPQRRRLADVMTAIREHVPLDGAGRHLAMNAERHLKPGHEIARLFSSCPH 254

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            A+E         SF L+      P     E   + +  ++ELR+ A  G   R   G  A
Sbjct: 255  AVEEASRFFSELSFDLKSLKYEYP----DEALGLTRSPKDELRHLAYEGANWRYPDGVPA 310

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                     +R++ EL +IA +++  YFL V   + +A+   I +  GRGS A SV  Y 
Sbjct: 311  S------VTERIEHELEIIAELEYEPYFLTVHHIVNFARSKGI-LCQGRGSAANSVVCYC 363

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            + +T++ P R  LLFERF++PDR   PD DIDF  +RR+EVI+Y+   YG +  A   T 
Sbjct: 364  IGVTEVSPERAGLLFERFISPDRREPPDIDIDFEHERREEVIQYIFEHYGRDNAALAATV 423

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR-----LA 504
             + +A++ALR+VG+A  +    +  L   +             + D   REA+     +A
Sbjct: 424  ITYRARSALREVGKAFSLSEDTIAALAGSV---------WGYHSSDVGEREAKAAGLSMA 474

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            DP    +++ ++++ G  RH S H  G VI    + + VP+         + +++   I+
Sbjct: 475  DPMTAAVMKYAEEISGFPRHLSQHVGGFVITRGRIDETVPILHSTMDGRTIIEWDKDDID 534

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPF--DDHETYHLLTTKGTLGIF 621
            + G++K D L L  L+ ++++ D L    G ++ L+ +    DD  TY ++    TLG+F
Sbjct: 535  ELGILKIDILALGMLSCIRRAFDLLKVHYGREITLAELSEGQDDPATYRMIQRADTLGVF 594

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLID 679
            Q+ES      L  ++PD   D++  V++ RPGPI  D +  Y  RK G E++    P + 
Sbjct: 595  QIESRAQMTMLPKLKPDKFYDLVIEVAIVRPGPIQGDMVHPYLRRKMGLEQVTYPKPELA 654

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASK 738
             +L  T GV ++QEQ M+IA + +G++  EAD LRRAM   +    +   +++ + G   
Sbjct: 655  EVLGRTLGVPLFQEQAMRIAIVAAGFTPGEADKLRRAMATFRRVGTIHTFRQKMVEGMVA 714

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             G     A   F+ +  F +YGF +SHAA++A++ Y + W+K HYP  F AA +  +   
Sbjct: 715  RGYEPDFAERCFKQIEGFGEYGFPESHAASFALLVYASCWLKCHYPDVFAAALLNAQPMG 774

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVD----------FKVGD------------NRIY 836
                 +  +DAR+  +   P SVN    D           K+ D            + + 
Sbjct: 775  FYAPAQIVRDAREHGVSFRPVSVNESGWDQSLEKEPFDASKIEDRHAGMRPAIWSAHAVR 834

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
                 +KG+       ++E      +DS+ D   R     L R V+E L  A A    G 
Sbjct: 835  LGFRQVKGLSEPDMAILVERRGAG-YDSVRDVWLRTG---LKRAVIERLAEADAFASLGL 890

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            SR   L ++  +          R    E   A +     D         E       N+ 
Sbjct: 891  SRRDALWAVRALDPKGA---AERLPLFEGAAAKDLQREPDAFLPPMRPGEE----VVNDY 943

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKG 1012
            R +      HP+   + IL +  I+    S+ T+R G+ + ++ +V+ +Q+  + KG
Sbjct: 944  RFISLSLKAHPVSFVREILTERRIR-TNRSLETLRSGSQVDVSGLVLVRQRPGSAKG 999


>gi|325963431|ref|YP_004241337.1| DNA-directed DNA polymerase III PolC [Arthrobacter phenanthrenivorans
            Sphe3]
 gi|323469518|gb|ADX73203.1| DNA-directed DNA polymerase III PolC [Arthrobacter phenanthrenivorans
            Sphe3]
          Length = 1162

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 279/1117 (24%), Positives = 503/1117 (45%), Gaps = 127/1117 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL V +++S   G      +    AAD   A+A TD + L+  ++  +   AAGI P
Sbjct: 2    SFTHLHVSTAFSAHYGVSWPEELAQAAAADGATALACTDRDGLYGTIKHLKACMAAGIDP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV---STAEGYQRLIELVSRMYLLDQGK 126
            I+G  L +   D    T            +V+L    +   GY+ L  L+S  +    GK
Sbjct: 62   IVGVDLTVFDDDGDHRTQ-------VAGRVVVLARGNNNGAGYRALCRLISDAHARTSGK 114

Query: 127  QSVRICLSWLQ-EIGTEGL--------IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
                + ++  + E+ +  L        + +  G    + RA       +  +R L  + L
Sbjct: 115  SGGAVPVAVTRAELASRTLDPQTLKPVLAVLVGPHSDVGRA-------MGGRRYLRPRTL 167

Query: 178  FGDRL-----------YVNLQRHRG--YDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
            F   L            V+     G         ++++LA  H++P V TN   + + + 
Sbjct: 168  FKQWLDAMPAGTLVAEIVSQLSMPGTPLSTAHAVRMLKLAEEHQVPAVLTNAVRYCAADG 227

Query: 225  YEAHDVL-MAVAHSTVVSQKDRPRVTP--DHYLKNRSEMVSI-----------FSDLPEA 270
                DVL  A    ++    + P + P    +LK+ +EM+ +            +DL + 
Sbjct: 228  APTADVLDSARTLKSLPELAEEPLLQPTGQGWLKSSAEMLQLGKEIISAAGYGAADLKQL 287

Query: 271  LENTVEIARRCSFI----LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
            +  T  +A  C       +    P++P   E     I ++   EL  +  AG+  R    
Sbjct: 288  MAQTEALADLCRIDPASDMGWKQPVVP---EASVIGISQDPHLELVQRCQAGIGRRFPGI 344

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
            + A G   +    RL+ EL +I  + FS YFL VA+  +  +   +     RGSGA S+ 
Sbjct: 345  SGADG---EKMLARLEHELGIIRNLGFSSYFLTVAEVSRMIQDMGVRAA-ARGSGASSLV 400

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
             Y + ++ ++PL+  L+FERFL+ DR ++PD DID     R  V   +  ++G ERV  +
Sbjct: 401  NYLIDVSQVNPLQHDLIFERFLSQDRATLPDIDIDVESAERHNVYHRIFERFGAERVTLM 460

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE--ARL- 503
                  +A+ A+RD G AL M   +V  + K +    A     +A+ +    RE   R+ 
Sbjct: 461  SMQNGYRARGAVRDAGLALGMDDGEVGEIAKQLWRFSARKFR-EALQEKPELREFAGRVE 519

Query: 504  -----ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
                  +  +D L++++++L+ L RH S H  G+++GD  L    P+ +     LP++QF
Sbjct: 520  QRDMHGNQQLDLLVDLTERLDRLPRHISMHPCGVILGDATLLDRTPV-QPSGLGLPMSQF 578

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSL----------------------------DFLA 590
            +   ++  G++K D LG++  + +  ++                            +++A
Sbjct: 579  DKHDMDPMGMLKLDVLGVRMQSAMAFAVREIIRIHPSKQEVVAAGGHSSGMDGTGPEYIA 638

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            + G ++DL+ +P DD  T+ L+ +  TLG FQ+ES G R+ +  M P    D+I  +SL+
Sbjct: 639  ENG-RIDLNAVPLDDEPTFELIRSTHTLGCFQIESPGQRELIGKMAPREFNDLIIDISLF 697

Query: 651  RPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+  D +  +   ++G    V  HPL+ P+L+ET GV ++ EQ+++   +++G  L+
Sbjct: 698  RPGPMKSDMVRPFLEHRHGFAPEVYPHPLLKPVLQETHGVTVFHEQILRTFDVMTGCGLA 757

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            +AD  RRA+  +    + + +E F   A + G    +   ++E L  FA +GF K+H AA
Sbjct: 758  KADEFRRALSSEAG--VSQVEEYFRMHAKEKGFQPDVVDKVWETLKSFASFGFCKAHGAA 815

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +AV +YQ+AW+KTH+P  FLA     +     K +    +AR+  I I+P  +N    ++
Sbjct: 816  FAVPTYQSAWLKTHHPEAFLAGLWEHDPGMYPK-RLLVAEARRLGIPILPLDINRSKAEY 874

Query: 829  KV---------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +V         G   I  SL  I G+     + I+   A +P+DSL D  +R    ++++
Sbjct: 875  RVEKITSGPDAGKLGIRLSLNGIYGLSAAELKRIV---AGQPYDSLADLRNR---SRVSK 928

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
              ++ L   GA D             D +Q   +    N   K   +   +       + 
Sbjct: 929  PSIKRLAQLGAFDSLHREAGGTANRADLVQHLQKLQGSNSGRKGVEVLEGQLSLPLGDVE 988

Query: 940  LEKFSVENSSVRFENEQR----VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
            L        ++   +  R    ++    S H +D ++P+L ++G+   ++ +    G  +
Sbjct: 989  LRNVKPGLPALSLVDNVRAELDLMAVDVSSHLMDSHRPMLNRLGVVTADKLLGLRNGTEV 1048

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +A + V+ Q    R G R+ +++  +     ++ FF
Sbjct: 1049 LVAGVRVATQTPPMRGGRRVVFISIDDGTGCIDSVFF 1085


>gi|221199957|ref|ZP_03573000.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2M]
 gi|221206888|ref|ZP_03579900.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2]
 gi|221173543|gb|EEE05978.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2]
 gi|221180196|gb|EEE12600.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2M]
          Length = 1065

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 282/1044 (27%), Positives = 466/1044 (44%), Gaps = 94/1044 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S++S L GA     ++ +    +   IAITD  +L  A      A AAG+ 
Sbjct: 3    PAYAELFCRSNFSFLHGASHAEELVARAVKLRYRGIAITDECSLAGAPRMHVAARAAGLP 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG   ++   +       G  P P    +VLL    EGY  L EL+S    +   K +
Sbjct: 63   LIIGSYFEVTPDE----APPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMAAPKGT 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             ++    L     E   +        I    +   + V + ++  F+  FG+R  + L Q
Sbjct: 118  YKLTPRMLSRPPEEFAHLRGMPDCFAILVPVYPVRADVLDAQVAWFRATFGERARLGLVQ 177

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D  +  ++        + +VA  +            DV+ A+   T VS+     
Sbjct: 178  LQRALDGPQRDEIRAAGARRGVRVVALGDVTMHRRSCKPLQDVMTAIRLGTPVSECGYA- 236

Query: 248  VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            + P  + +L++ + +  +FS          EIA+ C+ +   H          E D ++ 
Sbjct: 237  LAPNAEQHLRSLARIAKLFS--------ADEIAQTCAILDACHF---------ELDTLRY 279

Query: 306  EEENEL---RNKAVAGLEVRLAQGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIV 360
            E  +E+    +   + LE     GAI +      +   Q++ +EL++IA++ +  +FL V
Sbjct: 280  EYPDEIVPPGHTPTSYLEQETKAGAIERYPQGVPEKVEQQIRYELDLIAKLSYEPFFLTV 339

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +++A+  NI +  GRGS A S   Y L IT++DP + +LLFERF++ +R   PD D+
Sbjct: 340  YDIVKYARSRNI-LCQGRGSAANSAVCYCLGITEVDPEQSTLLFERFISENRGEPPDIDV 398

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR+EVI+++  KYG  R A      + + +  LR+ G+AL +    VDR+ K   
Sbjct: 399  DFEHQRREEVIQHIYEKYGKHRAAIAAAVSTYRPRGVLRETGKALGVDPMLVDRVAK--- 455

Query: 481  NDPAHPVSLQAIADDSR-----FREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
                H        D SR     F    L  A P +    E++ +L    RH S H+ G V
Sbjct: 456  ---GH-----RWFDGSRDLLQQFEMVGLDPATPLIRTWAELAARLLNFPRHLSQHSGGFV 507

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQR 592
            I    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ D + A R
Sbjct: 508  ISRGKLTRLVPVENAAMDGRRVIQWDKDDLEALGLLKVDVLALGMLSALHRAFDMITAWR 567

Query: 593  GVKVD-----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            G++ D        IP  D +TY ++    T+G+FQ+ES      L  ++P    D++  V
Sbjct: 568  GLQPDGKPFGFDHIPRHDDDTYDMICRADTVGVFQIESRAQMSMLPRLKPREYYDLVIQV 627

Query: 648  SLYRPGPIDNIVVYNNRKN-----GKEKIVSIHP--LIDPMLKETQGVIIYQEQVMQIAQ 700
            S+ RPGPI    V+   K      G+E+    +P   +  +L+ T GV I+QEQVMQIA 
Sbjct: 628  SIVRPGPIQGGAVHPYLKRRRIVAGEEEGEVTYPSDALKAVLERTLGVPIFQEQVMQIAI 687

Query: 701  LLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            + +G++  EAD LRRAM   K K ++ K  ++ ++G  + G ++  A  IFE +  F +Y
Sbjct: 688  VAAGFTPDEADALRRAMAAWKRKGDLGKYHDQIVNGMLERGYTREFAEQIFEQIKGFGEY 747

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GF +SHAA++A ++Y ++W+K H P  F+AA +  +        +  QDAR+  + + P 
Sbjct: 748  GFPESHAASFAKLAYASSWLKCHEPAIFVAALLNSQPMGFYAPAQLVQDARRHGVTVFPV 807

Query: 820  SVNT----------PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
             V            P      GD  +   L+ ++G G   AR I  A A  PF++++   
Sbjct: 808  DVTKSNWETSLEALPGAAPPDGDPAVRLGLSLVRGFGEAAARRIEAARAAGPFENVDALA 867

Query: 870  SRVDSKKLNRR-VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             R    +L RR +             G+ R  L Q++                   ++ A
Sbjct: 868  RRA---QLERRDLEALAAANALATLAGHRRDALWQAVA-------------AAPDRDLLA 911

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
                   D+         + +     +    G   + HP+ + +P LR   +    E   
Sbjct: 912  ---AAPIDEAERPALGAPSEADEILADYDTTGLTLNRHPVALLRPALRARRLSSAAELRD 968

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKG 1012
               G   R   +V+++Q   T KG
Sbjct: 969  RPDGRLARACGIVIARQMPGTAKG 992


>gi|239917574|ref|YP_002957132.1| DNA-directed DNA polymerase III PolC [Micrococcus luteus NCTC 2665]
 gi|239838781|gb|ACS30578.1| DNA-directed DNA polymerase III PolC [Micrococcus luteus NCTC 2665]
          Length = 1232

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 292/1103 (26%), Positives = 486/1103 (44%), Gaps = 109/1103 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL V S++S   G     +++   AA     +A TD + L+   +        GI PI
Sbjct: 14   FAHLHVASAFSAHYGVSWPEDLVAAAAAADMDLLACTDRDGLYGMAKHVGACLRHGITPI 73

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV---STAEGYQRLIELVSRMYLLDQGKQ 127
            +G  L +   ++    + G+        +V+L        GY+ L ELVS  +    G  
Sbjct: 74   VGVDLAVRWSED---EDAGR--------VVVLARGGCHGSGYRSLCELVSAAHARTTGGA 122

Query: 128  SV----------------RICLSWLQE-IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
            +                 R+  +  ++   T  L +L G  S  + R             
Sbjct: 123  AGGSPWASVAELAAAAAGRVPTAANRDNPPTPELFVLLGPDSD-VGRHLARRRYAAGLAA 181

Query: 171  LLTFKK-LFGDRLYVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
            L  +K  L     + ++  H     R  D     + ++ A    +P V TN   + + + 
Sbjct: 182  LRRWKAALPAGSPHADVVTHLSAPGRRLDTGHAVKTLRAARQARIPAVLTNAVRYAAPDG 241

Query: 225  YEAHDVLMAV-AHSTVVSQKDRPRVTPDH--YLKNRSEMVSIFSDLPEA--------LEN 273
                DVL AV A S++ +  D   + P+   +LK+ + M  I  ++  A        LE 
Sbjct: 242  AATADVLDAVRALSSLDALHD---LQPNGQGWLKSTAAMHRIAHEVASAADDRPAPLLEA 298

Query: 274  TVEIARRCSFILQVHAPI-LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ-----GA 327
            T  +A  C+   +      +PR  E     I    E+ LR +   GL  R        G 
Sbjct: 299  TRRLAEACALDPETDLGWGVPRVPEAAVIGIDGPPEHVLRERTRTGLLARYPHLHTRGGL 358

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                  A+D + R + EL +I R+ FS YFL VA  +   +   I V   RGSGA S+  
Sbjct: 359  PGTSQAARDLQDRAEHELGIITRLGFSSYFLTVAAVVDLIEGMGIRVA-ARGSGASSLVN 417

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            +AL I+ +DP+   L+ ERFL+ DR ++PD DID    RR E+   V +++G ER   + 
Sbjct: 418  HALRISHVDPMANGLIMERFLSTDRSTLPDIDIDVESARRHEIYHAVVDRFGAERTTLMS 477

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV--SLQAIAD----DSRFREA 501
               + +A+ A+RD G AL MP  +VD + K +    A     +LQ + +      R    
Sbjct: 478  MQNAYRARGAVRDAGLALGMPEPEVDAIAKQLWRFSASNFREALQRMPELGGLSRRIESG 537

Query: 502  RL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
            R   D  +D L++++++L+ L RH S H  G+++GD  L    P+ +     LP++QF+ 
Sbjct: 538  RAEGDRQLDLLVDLTERLDRLPRHISMHPCGVILGDATLLHRTPV-QPSGMGLPMSQFDK 596

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLG 619
              ++  G +K D LG++  + +  ++  + +  G ++DL  +P DD  TY ++ T  TLG
Sbjct: 597  HDMDPMGFLKLDILGVRMQSAIAYTIAEVERTTGERIDLEQVPLDDDATYAMIRTTHTLG 656

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL 677
             FQ+ES G R+ +  + P    D+   +SL+RPGP+  D +  +  +++G       HP 
Sbjct: 657  CFQIESPGQRELVGKLAPREFNDLTVDISLFRPGPMQSDMVRPFLEQRHGWAPAHYPHPD 716

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            + P+L ET GV ++ EQV++   +++G  L+ AD  RR +G   +  ++   E F +GA 
Sbjct: 717  LRPVLAETHGVTVFHEQVLRTMDVMTGCGLARADEHRRLLGGPQEHLVE---EAFRTGAL 773

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
              G    +   ++  L+ F  +GF K+H AA+AV +Y +AW+KTH+P  F+AA   LE D
Sbjct: 774  ARGYPLEVIDEVWATLSAFGSFGFCKAHGAAFAVPTYHSAWLKTHHPAAFMAA--ILEHD 831

Query: 798  -NVEKIKKFCQDARQFNIQIMPPSVNT-------------PCVDFKV-GDNRIYYSLAAI 842
              +   +    +AR+  I ++P  VN              P VD    G   I   L ++
Sbjct: 832  PGMYPARLMVAEARRMGIPVLPVDVNASSRHVHVEWVPAHPEVDDGAPGRWGIRLPLTSL 891

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF----GYSR 898
             G+       +    A +P+ SL D   R      N   LE L   GALDC     G SR
Sbjct: 892  SGLSEAETDRL---DAGRPYRSLADVRDRARPTARN---LERLAQLGALDCLLPPGGASR 945

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKH---------ENIFAHEKGTFSDKITLEKFSVENSS 949
              L+  L+      +     RT            E   A +            F     +
Sbjct: 946  TDLVHHLELQHSTTRGTAPGRTAPRSRSARPRQVEGQLALDLPDTELTALAPLFPDPGPA 1005

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             R   E  +     + H +D + P L  +G+   ++ +     + + +A + V+ Q    
Sbjct: 1006 ARVRTELELTALDVTAHLMDSHAPYLDALGVTRAKDLLGLRTQSRVLVAGVRVATQTPPM 1065

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
            R G R+ +++  +     +A+FF
Sbjct: 1066 RSGKRVVFLSVDDGTGCVDASFF 1088


>gi|254487325|ref|ZP_05100530.1| DNA polymerase III, alpha subunit subfamily, putative [Roseobacter
            sp. GAI101]
 gi|214044194|gb|EEB84832.1| DNA polymerase III, alpha subunit subfamily, putative [Roseobacter
            sp. GAI101]
          Length = 1103

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 275/1039 (26%), Positives = 468/1039 (45%), Gaps = 105/1039 (10%)

Query: 11   FVHLQVHSSYSLLEGA---LSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +V L V S +S L  A   + L    + +  D   A+ I D N L   +    +A  A I
Sbjct: 26   YVELGVASCFSFLRAASDAVDLTATANLLGYD---AMGIADRNTLAGVVRVYSEASKAKI 82

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD---- 123
            +PI+G +L       + M       +P            + Y RL  L+S+  + D    
Sbjct: 83   RPIVGARL-------VLMCGTDLLAYP---------RDRDAYARLSTLLSKGKMADVDGG 126

Query: 124  -QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             Q K +  + L  + +   +  +++      P +    F +      RLL  + L G R 
Sbjct: 127  WQEKGTTHLTLEMVADHAEDLELIVM-----PPEELQVFEAGL---PRLL--RALPGLRH 176

Query: 183  YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVS 241
                  +RG D  R +Q+ +LA  H L ++ATN+ L+         DV+  +    T+ +
Sbjct: 177  MGAAYLYRGDDVARINQLDRLAKAHGLGILATNDVLYHGPSRRPLQDVMTCIREGRTIET 236

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                     + YLK  SEM  +F+  P A+  T ++A  C+F L       P  I  E  
Sbjct: 237  AGFLLEANAERYLKPPSEMCRLFAAWPHAIAATRKLADACTFSLGDLKYEYPHEIVPE-- 294

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               +  + EL      G   R  QG   +          ++ E  +I   K + YFL + 
Sbjct: 295  --GRTAQEELERLTWKGAAERYPQGVPDR------IEAVIEKEFALIRSKKIARYFLTIN 346

Query: 362  DFIQWAKKNNIP--VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            D +++A+++  P  +  GRGS A S   + L IT +DP    +LFERFL+ +R   PD D
Sbjct: 347  DIVRFARQDAQPPILCQGRGSAANSTVCFCLGITAVDPAEHDVLFERFLSEERDEPPDID 406

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EVI+Y+  KYG  R     T    + ++A+R+VG+A+ +      +L   +
Sbjct: 407  VDFEHERREEVIQYMYAKYGRHRAGLCATVIHYRPRSAIREVGKAMGLSEDVTSKLASTV 466

Query: 480  PNDPAHPVSLQAIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                    S +A   D R +EA   L+DP + R+L +++++ G+ RH S H  G ++ +R
Sbjct: 467  WG------SFEASVGDDRVKEAGMDLSDPYLRRVLMLAREMTGMPRHLSQHVGGFILTER 520

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKV 596
            PL+++VP+      D    +++   I+  G+ K D L L  LT + K  D + A      
Sbjct: 521  PLTEMVPIGNGAMPDRSFIEWDKDDIDALGIFKVDILALGMLTCIAKCFDLMRAHYNDDK 580

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            +L+ +P DD  TY +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI 
Sbjct: 581  ELATVPPDDDATYDMLCAGDSLGVFQVESRAQMAMLPKLRPRVFYDLVIEVAIVRPGPIQ 640

Query: 657  NIVVYNN-RKNGKEKIVSIHPLIDP---------MLKETQGVIIYQEQVMQIAQLLSGYS 706
              +V+   R+  +++ VS +P   P         +L  T GV I+QEQ M+IA   + ++
Sbjct: 641  GDMVHPFLRRRQRQEGVS-YPAPGPEHPQDELLKILGRTLGVPIFQEQAMKIAIDAAQFT 699

Query: 707  LSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
             +EA+ LR+AM   + +  ++  + + +   +K G     A   F+ +  F +YGF +SH
Sbjct: 700  PTEANELRKAMATFRSRGTIETLQTKMVGRMTKRGYDPEFAQRCFDQIKGFGEYGFPESH 759

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP- 824
            AA++A + Y ++WMK HYP  F  A +  +        +  +DAR+  +++    V+   
Sbjct: 760  AASFAKLVYVSSWMKCHYPAAFACALLNSQPMGFYAPAQIVRDAREHGVEVRGVDVDFSD 819

Query: 825  --CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
              C      D   +   +  + G+    A  IM+A  D+P+  + D  +R    +L+R  
Sbjct: 820  WNCTLEPSSDGFALRLGMRQVDGMREDAAARIMDAR-DRPYVDVADLKTRA---RLDRGQ 875

Query: 882  LESLVFAGALDCFGYSRMQLL---QSLDN-----IQKYAQWVEKNRTNKHENIFAHEKGT 933
            +  L  A A+   G  R Q L   Q+L +     I  YA  V++          A     
Sbjct: 876  IRKLAEADAMRTMGIDRRQALWQAQALKDAPDLPIFTYADAVDEG---------AEPPVL 926

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
                   E+   +  ++R              HP+  ++  LRK G     +      G 
Sbjct: 927  LPAMPQAEQVVADYQTLRLS---------LKAHPISFFRSSLRKQGFIAAGDLPGLNHGR 977

Query: 994  NIRLAAMVVSKQQKKTRKG 1012
             + LA +V+ +Q+  + KG
Sbjct: 978  KVSLAGLVLVRQKPGSAKG 996


>gi|120553905|ref|YP_958256.1| DNA polymerase III, alpha subunit [Marinobacter aquaeolei VT8]
 gi|120323754|gb|ABM18069.1| DNA polymerase III, alpha subunit [Marinobacter aquaeolei VT8]
          Length = 1039

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 285/1038 (27%), Positives = 468/1038 (45%), Gaps = 112/1038 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+++ L GA   + + ++ A     AIAITD  ++            + ++ I
Sbjct: 5    YAELFCFSNFTFLTGASHPHELAEQAAELGYRAIAITDACSVAGIPRAWAALKDSPVKLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-----------RM 119
             G   +      L  T +G T     P  +LL  T EGY +L +L++           R+
Sbjct: 65   TGSWFE------LSDTPEGAT---APPRFILLARTREGYGQLCQLITTGRRRAEKGQYRL 115

Query: 120  YLLDQGKQSVRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT---FK 175
            +  D    S+  CL  WL  +                       S   A + L+T    +
Sbjct: 116  FTRDIETHSLDHCLCLWLPPL----------------------VSQTNAHQALITGEWLQ 153

Query: 176  KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE---LPLVATNNSLFLSEEDYEAHDVLM 232
            ++F  RL   L   R  +   E Q+V++ +  E     +VAT        E     DVL 
Sbjct: 154  RIFEHRL--RLAATRTLEAGEEQQLVRVRWLAEQMRCAVVATGQVHMHRRERQPLQDVLT 211

Query: 233  AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSF----ILQ 286
            A+ H T + Q         + YL+    +  +F   PE  +  TV IA  CSF    +  
Sbjct: 212  ALRHHTTLEQAGHCLFQNAERYLRPIPVIRRLF---PEPWVRETVAIAEACSFEPGSLRY 268

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
             + P L    E     + +      R +  +G  +++ Q  I K             EL 
Sbjct: 269  EYPPDLVPEHETPTSFLARLTREGERRRYPSGTPMKV-QALIRK-------------ELE 314

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            +IA +++  YFL + D + +A++  I +  GRGS A S   Y L IT+++P    LLFER
Sbjct: 315  LIAELRYEHYFLTIHDIVDFARRQGI-LCQGRGSAANSAVCYCLGITEVNPANVELLFER 373

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            F++ DR   PD D+DF  +RR+EVI+Y+  +YG ER A   T    + ++A+RDVG+AL 
Sbjct: 374  FISKDRDEPPDIDVDFEHERREEVIQYIYQRYGRERAALAATVIRYRPRSAIRDVGKALG 433

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
               + V++L   I          Q I D    R   +A    D+   +   L G  RH S
Sbjct: 434  FDATLVEKLLDGIDWRDKTTGWRQQILDKGLTRSPNVA----DQFFTLVNTLLGFPRHLS 489

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             H  G VI   PLS+LVP+         V Q++   +E  GL+K D L L  LT ++K+L
Sbjct: 490  QHVGGFVISAGPLSELVPVENAAMEGRTVIQWDKDDLESLGLMKVDVLALGMLTAIRKAL 549

Query: 587  DFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
              ++ ++G    +  +P +D +TY +L    ++G+FQ+ES      L  ++P+   D++ 
Sbjct: 550  ALISEEKGTTFTIQDVPQEDPDTYAMLQKGDSIGVFQVESRAQINMLPRLKPETWYDLVI 609

Query: 646  LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
             V++ RPGPI  D +  Y  RK+G E +   +  +  +L+ T GV I+QEQV+++A + +
Sbjct: 610  EVAIVRPGPIQGDMVHPYLRRKHGMEAVEYPNDAVRQVLERTLGVPIFQEQVIKLAMVAA 669

Query: 704  GYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            G+S  EAD LRRAM   K   ++   +++ I G  + G     A  +++ +  F  YGF 
Sbjct: 670  GFSAGEADKLRRAMAAWKSHGDLTPFRDKLIQGMLERGHDADFAERLYKQICGFGGYGFP 729

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            +SHAA++A++ Y +AW+K H+P  F  A +  +        +  QDAR+ N+ ++PP VN
Sbjct: 730  ESHAASFALLVYVSAWIKRHHPAAFYCALLNSQPMGFYSPSQLVQDARRHNVTVLPPDVN 789

Query: 823  TPCVDFKV--GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                   +   +  +   L  I+G+    A     A  ++P +  +          LN+ 
Sbjct: 790  HSQWQHTLQGPEQHLRLGLRIIQGLPRNGAE---RAHQNRPANGYQSAAELRTRAGLNQS 846

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT--FSDKI 938
             +E L  A A+  F  +R          Q Y Q +E     +   +FA+E  T    +  
Sbjct: 847  DMELLAGANAMPGFTSNRH---------QAYWQLLEHEEPAE---LFANEAMTEYTPEPC 894

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY----EESVATIRGNN 994
             L     E  +V  +   +  G     HPL     +LR+ G   +    ++  AT  G  
Sbjct: 895  HLLPEPTEGQNVLADYSSQ--GLTLQRHPL----ALLREQGHLRHCLTADQLKATRPGIP 948

Query: 995  IRLAAMVVSKQQKKTRKG 1012
            +++A +V  +Q+  T  G
Sbjct: 949  VQVAGLVTGRQRPGTASG 966


>gi|159042658|ref|YP_001531452.1| DNA polymerase III subunit alpha [Dinoroseobacter shibae DFL 12]
 gi|157910418|gb|ABV91851.1| DNA polymerase III, alpha subunit [Dinoroseobacter shibae DFL 12]
          Length = 994

 Score =  322 bits (824), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 225/735 (30%), Positives = 361/735 (49%), Gaps = 35/735 (4%)

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRVT 249
           G DR R  +   LA T  LP VA+   LF         DVL A+ +   V    R  +  
Sbjct: 196 GQDRVRFDRWAALADTLGLPTVASAAPLFHCATHRRLADVLTAIRNGCRVEDLGRTAQAH 255

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            +  L++ +EM+ +F    +A+  T EIA RCSF L        R+         +  ++
Sbjct: 256 AEQRLRSEAEMLRLFRGHEDAVHRTAEIAARCSFCLSQL-----RYEYPSETRGGETAQD 310

Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            L   A  GL  R   GA  K       R+ LD EL +I ++ ++ YFL V D + +A+ 
Sbjct: 311 RLSRLAHEGLRWRYRNGAPPK------VRKMLDHELRLIGKLGYAPYFLTVNDIVAFARS 364

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            +I +  GRGS A SV  Y L IT + P   +++FERF++  R   PD D+DF  +RR+E
Sbjct: 365 RDI-LCQGRGSAANSVVCYCLGITSVSPEVGTMVFERFVSEARDEPPDIDVDFEHERREE 423

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
           VI+++  +YG  R     T    + K A+R+VGRA+ +    +  L   I        S+
Sbjct: 424 VIQHIYERYGRHRAGLCATVIHYRGKRAVREVGRAMGLSSDTLSALSSQIWGFG----SV 479

Query: 490 QAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           + I +++R RE  L DP+  RL   +++  +++G  RH S H  G +I +  L +LVP+ 
Sbjct: 480 RGI-EETRLREIGL-DPTDRRLRQTIDLIYRIQGFPRHLSQHVGGFIITEGRLDELVPVE 537

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                D  V  ++   ++  G++K D L L  L+ ++K+ D +A   G K  L+ +P +D
Sbjct: 538 NATMVDRTVVCWDKDDLDSLGILKIDILALGMLSCVRKAFDLIAHHHGAKFSLATLPVED 597

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
              Y +L    ++G+FQ+ES      L  M+P C  D++  V++ RPGPI   +V+    
Sbjct: 598 PAVYDMLCRADSIGVFQVESRAQMNFLPRMRPRCFYDLVIQVAIVRPGPIQGDMVHPFIR 657

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
           R+NG+E++      +  +L +T GV ++QEQ MQIA + +G+  SEAD LRRA+   K  
Sbjct: 658 RRNGEEQVEFPSDALGEVLSKTLGVPLFQEQAMQIAIVGAGFDPSEADRLRRALATFKKH 717

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             + + + RF+ G ++NG     A   F  +  F  YGF +SHAA++A++ Y +AW+K H
Sbjct: 718 GNVSEFRTRFLKGMAQNGYDTAFAERCFSQIEGFGSYGFPESHAASFALLVYASAWIKCH 777

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYY 837
           +P  F  A +  +        +  +DAR+  + + P  VN    D  +     G   +  
Sbjct: 778 HPGIFACALLNAQPMGFYAPAQIMRDAREHGVTVRPVCVNASFWDNTMEPDGQGGLALRL 837

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
               +KG+    A  ++ A  +  + ++ D   R     L + VL  L  A A    G  
Sbjct: 838 GFRQVKGLAQEDAEWLVSARGNG-YGTVADLWRRA---GLGQAVLTRLAEADAFAELGLG 893

Query: 898 RMQLLQSLDNIQKYA 912
           R   L     I+  A
Sbjct: 894 RRDALWQARAIRGDA 908


>gi|289705560|ref|ZP_06501952.1| DNA polymerase III, alpha subunit [Micrococcus luteus SK58]
 gi|289557789|gb|EFD51088.1| DNA polymerase III, alpha subunit [Micrococcus luteus SK58]
          Length = 1232

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 290/1104 (26%), Positives = 480/1104 (43%), Gaps = 111/1104 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL V S++S   G     +++   AA     +A TD + L+   +        GI PI
Sbjct: 14   FAHLHVASAFSAHYGVSWPEDLVAAAAAADMDLLACTDRDGLYGMAKHVGACLRHGITPI 73

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA---EGYQRLIELVSRMYLLDQGKQ 127
            +G  L +   ++ +              +V+L        GY+ L ELVS  +    G  
Sbjct: 74   VGVDLAVRWSEDEEAGR-----------VVVLARGGCHGSGYRSLCELVSAAHARTTGGA 122

Query: 128  SVRICLSWLQEIGTE----GLIMLTGGSSGPIDRAFFF-------NSSQVAEKR----LL 172
            +      W           G +        P     F            +A +R    L 
Sbjct: 123  AG--GSPWASVAELAAAAAGRVPTAANRDNPPTPELFVLLGPDSDVGRHLARRRYAAGLT 180

Query: 173  TFKK----LFGDRLYVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEE 223
              ++    L     + ++  H     R  D     + ++ A    +P V TN   + + +
Sbjct: 181  ALRRWKAALPAGSPHADVVTHLSAPGRRLDTGHAVKTLRAARQARIPAVLTNAVRYAAPD 240

Query: 224  DYEAHDVLMAV-AHSTVVSQKDRPRVTPDH--YLKNRSEMVSIFSDLPEA--------LE 272
                 DVL AV A S++ +  D   + P+   +LK+ + M  I  ++  A        LE
Sbjct: 241  GAATADVLDAVRALSSLDALHD---LQPNGQGWLKSTAAMHRIAHEIAFAADDRPAPLLE 297

Query: 273  NTVEIARRCSFILQVHAPI-LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ-----G 326
             T  +A  C+   +      +PR  E     I    E+ LR +   GL  R        G
Sbjct: 298  ATRRLAEACALDPETDLGWGVPRVPEAAVIGIDGPPEHVLRERTRTGLLARYPHLHTGGG 357

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                   A+D + R + EL +I R+ FS YFL VA  +   +   I V   RGSGA S+ 
Sbjct: 358  LPGTSQAARDLQDRAEHELGIITRLGFSSYFLTVAAVVDLIEGMGIRVA-ARGSGASSLV 416

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
             +AL I+ +DP+   L+ ERFL+ DR ++PD DID    RR E+   V  ++G ER   +
Sbjct: 417  NHALRISHVDPMANGLIMERFLSTDRSTLPDIDIDVESARRHEIYHAVVERFGAERTTLM 476

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV--SLQAIAD----DSRFRE 500
                + +A+ A+RD G AL MP  +VD + K +    A     +LQ + +      R   
Sbjct: 477  SMQNAYRARGAVRDAGLALGMPEPEVDAIAKQLWRFSASNFREALQRMPELGGLSRRIES 536

Query: 501  ARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
             R   D  +D L++++++L+ L RH S H  G+++GD  L    P+ +     LP++QF+
Sbjct: 537  GRAEGDRQLDLLVDLTERLDRLPRHISMHPCGVILGDATLLHRTPV-QPSGMGLPMSQFD 595

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTL 618
               ++  G +K D LG++  + +  ++  + +  G ++DL  +P DD  TY ++ T  TL
Sbjct: 596  KHDMDPMGFLKLDILGVRMQSAIAYTIAEVERTTGERIDLEQVPLDDPATYAMIRTTHTL 655

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP 676
            G FQ+ES G R+ +  + P    D+   +SL+RPGP+  D +  +  +++G       HP
Sbjct: 656  GCFQIESPGQRELVGKLAPREFNDLTVDISLFRPGPMQSDMVRPFLEQRHGWAPAHYPHP 715

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
             + P+L ET GV ++ EQV++   +++G  L+ AD  RR +G   +  ++   E F +GA
Sbjct: 716  DLRPVLAETHGVTVFHEQVLRTMDVMTGCGLARADEHRRLLGGPQEHLVE---EAFRTGA 772

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
               G S  +   ++  L+ F  +GF K+H AA+AV +Y +AW+KTH+P  F+AA   LE 
Sbjct: 773  LARGYSLDVIDEVWATLSAFGSFGFCKAHGAAFAVPTYHSAWLKTHHPAAFMAA--ILEH 830

Query: 797  D-NVEKIKKFCQDARQFNIQIMPPSVNT-------------PCVDFKV-GDNRIYYSLAA 841
            D  +   +    +AR+  I ++P  VN              P VD    G   I   L +
Sbjct: 831  DPGMYPARLMVAEARRMGIPVLPVDVNASSRHVHVEWVPAHPEVDDGAPGRWGIRLPLTS 890

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF----GYS 897
            + G+       +    A +P+ SL D   R      N   LE L   GALDC     G S
Sbjct: 891  LSGLSEAETDRL---DAGRPYRSLADVRDRARPTARN---LERLAQLGALDCLLPPGGAS 944

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKH---------ENIFAHEKGTFSDKITLEKFSVENS 948
            R  L+  L+      +     RT            E   A +            F     
Sbjct: 945  RTDLVHHLELQHSTTRGTAPGRTAPRSRSARPRQVEGQLALDLPDTELTALAPLFPEPGP 1004

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
            + R   E  +     + H +D + P L  +G+   ++ +     + + +A + V+ Q   
Sbjct: 1005 AARVRTELELTALDVTAHLMDSHAPYLDALGVTRAKDLLGLRTQSRVLVAGVRVATQTPP 1064

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
             R G R+ +++  +     +A+FF
Sbjct: 1065 MRSGKRVVFLSVDDGTGCVDASFF 1088


>gi|294628568|ref|ZP_06707128.1| error-prone DNA polymerase [Streptomyces sp. e14]
 gi|292831901|gb|EFF90250.1| error-prone DNA polymerase [Streptomyces sp. e14]
          Length = 1097

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 290/1113 (26%), Positives = 474/1113 (42%), Gaps = 146/1113 (13%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            + P F HL   S +SL  GA     + ++ A     A+A+TD + L   + F++    AG
Sbjct: 5    RVPGFSHLHTVSGFSLRYGASHPERLAERAAERGMDALALTDRDTLAGTVRFAKACATAG 64

Query: 67   IQPIIGCQLDIDMQ-----------------------------DNLKMTNQGKTPF---- 93
            ++P+ G  L +                                D      + +TP     
Sbjct: 65   VRPLFGVDLAVAEPRPAPPAGRAAVRPDGSVARRTAPAWPAGGDGAVRPERRRTPVRGGA 124

Query: 94   ---PTVPSIVLLV-STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
                + P +  L    A G+  L  LV+  +            L+W  +   +GL +L G
Sbjct: 125  FVDESAPRVTFLARDGARGWADLCRLVTAAHAAPADTP----LLAW-PDNHADGLTVLLG 179

Query: 150  GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH----RGYDRYR-ESQVVQLA 204
              S  + RA        A + L+ +++++GD L +    H     G    R  ++ V  A
Sbjct: 180  PDSD-VGRALAAGRPDRAARLLVPWREVYGDALRLEAVWHGRTGTGPGSLRLAARTVGFA 238

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV--- 261
                +  V +N   +         DVL A A   V  +      + + +LK+   M+   
Sbjct: 239  AEQRVRPVLSNAVRYADPGQGPVADVLDA-ARRLVPIEAAGELDSGEAWLKDPGAMLHAA 297

Query: 262  ---SIFSDLPEA------LENTVEIARRCSF-------ILQVHAPILPRFIEKECDDIQK 305
                    LP        LE T   A  C         +  VH P  P  +         
Sbjct: 298  RADRRGRRLPPRHPPTGLLEQTRATAAECLVDPEDDLGMGAVHFP-EPHLV--------- 347

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQ-DYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  R  A   L  R A G + +GY  +  Y +R+  EL+VIA   F+ YFL VA  +
Sbjct: 348  ---GAGRRTAQRTLASRAAAGMVLRGYAGRRAYWERMHEELDVIAYHGFASYFLTVAQVV 404

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
               ++  I V   RGSGAGS+  + L I   DP+   LL ERFL+  R  +PD DID   
Sbjct: 405  DDVREMGIRVA-ARGSGAGSLVNHLLGIAHADPVEHGLLMERFLSKRRFVLPDIDIDVES 463

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR EV R +  ++G ERVA +    + + + A+RDVG AL M  +++DR+ K  P+  A
Sbjct: 464  ARRLEVYRRIIGRFGAERVATVAMPETYRVRHAVRDVGAALSMDPAEIDRVAKSFPHIRA 523

Query: 485  HPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                        L+A+A +              RL E+ + L+ L R  + H  G+++ D
Sbjct: 524  RDARAALEELPELKALAGEKE---------RYGRLWELVEALDALPRGIAMHPCGVLLSD 574

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595
              L    P+       LP++QF+ + +E  GL+K D LG++  + +  ++  + +  G +
Sbjct: 575  ASLLARTPVVPTSGEGLPMSQFDKEDVEDLGLLKLDVLGVRMQSAMAHAVAEVERATGER 634

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +DL  +P  D  TY L+ +  TLG FQ+ES G R  +  +QPD   D++  +SL+RPGP+
Sbjct: 635  IDLDSVPPGDPATYRLIRSAETLGCFQIESPGQRDLVGRLQPDTFHDLVVDISLFRPGPV 694

Query: 656  --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              D +  +   ++G+  +   HP +   L+ET GV+++ EQ++ I  L++G    EAD +
Sbjct: 695  AADMVRPFIEARHGRAPVRYPHPDLREPLEETYGVVVFHEQIIHIVHLMTGCGRDEADRV 754

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RR +     E   + K  F   A++ G         +E++  F  YGF K+HA A+AV +
Sbjct: 755  RRGLSD--PESQGRIKVWFAQRAAERGYGAETIQRTWEIVEAFGSYGFCKAHAVAFAVPT 812

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--- 830
            YQ+AW+K H+P  F A  +T +     K +    DAR+  + I+P  VN   V  ++   
Sbjct: 813  YQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRGVPILPLDVNRSGVAHRIELV 871

Query: 831  ---GDNR------------------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
               G++                   +  +L+ + G+    A  I   +A +P+ SL DF 
Sbjct: 872  SEKGESEGGRAPKRAEGSAATARWGLRLALSDVHGISEAEAARI---AAGRPYASLLDFW 928

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             R    + +R +   L   GALD FG +R  L   L  + + A+     +          
Sbjct: 929  ERA---RPSRPIAGRLAQVGALDAFGANRRDLQLHLTELHRGARGAGGGQ-------LPL 978

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
              G  +    L   S    + R   E  VL    S + +D ++  L ++G+       A 
Sbjct: 979  AGGKKTAAAGLPDLS---DAERLSAELGVLSMDASRNLMDDHRAFLDELGVVSARRLRAA 1035

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
              G  + +A    + Q    R G R+ + T  +
Sbjct: 1036 RHGETVLVAGAKAATQTPPIRSGKRVIFSTLDD 1068


>gi|206559167|ref|YP_002229927.1| error-prone DNA polymerase [Burkholderia cenocepacia J2315]
 gi|198035204|emb|CAR51078.1| error-prone DNA polymerase [Burkholderia cenocepacia J2315]
          Length = 1070

 Score =  321 bits (822), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 286/1066 (26%), Positives = 464/1066 (43%), Gaps = 138/1066 (12%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA   + ++++        IAITD  +L  A      A A G+ 
Sbjct: 8    PDYAELFCRSNFSFLHGASHADELVERAVKLGYRGIAITDECSLAGAPRMHVAAKANGLP 67

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +IG   D+   D       G  P P    +VLL    EGY  L EL+S           
Sbjct: 68   LVIGSYFDVTPDD----VAPGHDPGPGAFGLVLLAQNREGYGNLSELIS----------- 112

Query: 129  VRICLSWLQEIGTEGLIMLTGG--SSGPIDRAFFFN--------------SSQVAEKRLL 172
                  W +    +G   LT    S+ P + A                   + V + ++ 
Sbjct: 113  ------WRRMASPKGTYQLTSRMLSAPPAEFAHLRGMPDCFAILVPTYPVRADVLDAQVA 166

Query: 173  TFKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             F+  FG+R  + L Q  R  D  +  ++ +      + LVA  +            DV+
Sbjct: 167  WFRATFGERARLGLVQLQRALDGAQRDEIREAGKRRGVRLVALGDVTMHVRSCKPLQDVM 226

Query: 232  MAVAHSTVVSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             A+     VS+     + P  + +L++R  +  +FS        + EIA  C+       
Sbjct: 227  TAIRVGMPVSECGYA-LAPNAEQHLRSRGRIAKLFS--------SAEIAETCAMF----- 272

Query: 290  PILPRFIEKECDDIQKEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                   + E D ++ E  +E           L  +  AG  VR  QG   K        
Sbjct: 273  ----DACDFELDSLRYEYPDEIVPAGLTPTRYLEQETFAGAAVRYPQGIPEK------VD 322

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +++  EL++IAR+ +  +FL V D +++A+  NI +  GRGS A SV  Y L IT+++P 
Sbjct: 323  KQIRHELDLIARLSYEPFFLTVYDIVKYARSQNI-LCQGRGSAANSVVCYCLGITEVNPE 381

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
            + ++LFERF++ +R   PD D+DF   RR+EVI+++  KYG +R A      + + +  L
Sbjct: 382  QSTMLFERFISEERGEPPDIDVDFEHQRREEVIQHIYAKYGKDRAALAAAVSTYRPRGVL 441

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD-------PSVDRL 511
            R+ G+AL +    VDR+ K       H        D SR    + A        P +   
Sbjct: 442  RETGKALGVDPMLVDRVAK------GH-----RWFDGSRDLLRQFASTGLDPETPLIRTW 490

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
             E++ +L    RH S H+ G  I    L++LVP+         V Q++   +E  GL+K 
Sbjct: 491  AELAGRLLNFPRHLSQHSGGFAISRGKLTRLVPVENAAMDGRRVIQWDKDDLEALGLMKV 550

Query: 572  DFLGLKTLTLLQKSLDF-LAQRGVKVD-----LSLIPFDDHETYHLLTTKGTLGIFQLES 625
            D L L  L+ L ++ D   A RG   D     L  IP DD  TY ++    T+G+FQ+ES
Sbjct: 551  DVLALGMLSALHRAFDLRTAWRGPAKDGKPFTLKHIPQDDKATYDMICRADTVGVFQIES 610

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKN---GKEKIVSIHP--LI 678
                  L  ++P    D++  VS+ RPGPI    V  Y  R+    G+E+    +P   +
Sbjct: 611  RAQMSMLPRLKPRNYYDLVVQVSIVRPGPIQGGAVHPYLQRRRIVAGEEEGEVTYPSDAL 670

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGAS 737
              +L  T GV I+QEQVMQIA + +G++  EAD LRRAM   K K  ++K +++ ISG  
Sbjct: 671  KEVLVRTLGVPIFQEQVMQIAIVAAGFTPGEADDLRRAMAAWKRKGNLEKYQDKIISGML 730

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            +   ++  A  IFE +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +  
Sbjct: 731  ERNYTREFAEQIFEQIKGFGEYGFPESHAASFAKLAYASSWLKCHEPAIFLAALLNSQPM 790

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----------GDNRIYYSLAAIKGVGT 847
                  +  QDA++  ++++P  V     +  +          G   +   L+ ++G+  
Sbjct: 791  GFYPPSQLVQDAKRHRVKVLPIDVTQSTWEAALEALPDQPPPHGQPAVRLGLSLVRGLSE 850

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRR-VLESLVFAGALDCFGYSRMQLLQSLD 906
              AR I  A A  PFD+++    R    +L RR +             G+ R  L Q++ 
Sbjct: 851  AAARRIEAARAAGPFDNVDTLARRA---QLERRDLEALAAANALATLAGHRRDALWQAVA 907

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                              ++ A       D++        + +     +    G   + H
Sbjct: 908  -------------AAPERDLLA---AAPIDEVEQPALGAPSEADDILADYHTTGLTLNRH 951

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            P+ + +P LR   +    E      G   R   +V+++Q   T KG
Sbjct: 952  PVALLRPALRAQRLSSAAELRDRPDGRLARACGLVIARQMPGTAKG 997


>gi|90020675|ref|YP_526502.1| pantoate-beta-alanine ligase [Saccharophagus degradans 2-40]
 gi|123396461|sp|Q21LY9|DNAE2_SACD2 RecName: Full=Error-prone DNA polymerase
 gi|89950275|gb|ABD80290.1| DNA polymerase III, alpha subunit [Saccharophagus degradans 2-40]
          Length = 1029

 Score =  320 bits (821), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 254/879 (28%), Positives = 411/879 (46%), Gaps = 71/879 (8%)

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSL 218
            +FN+  +++  + T    F  RL++ +         R  S + +LA    +PLVA+  + 
Sbjct: 125  YFNN-HISDVDVTTLATAFKQRLWIGVSHTLIAAEQRLFSHLNKLANALHVPLVASGLTY 183

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEAL-ENTVE 276
              ++      D+L A+  +T + Q   R     +  LK   E+  ++   PEAL + T  
Sbjct: 184  MHNKNCKPLLDILTAIRENTPIQQLGTRLHSNAEVNLKPLHELNQLY---PEALIQQTQV 240

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            IA+ C+F L       P    KE           L+     G   R  QG      HAQ 
Sbjct: 241  IAQLCNFSLDELRYQYP----KELVPSNTTPIAHLKKLVKEGEAKRWPQGTPE---HAQK 293

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
                +  EL +I  M++  YFL V D + +A+  NI +  GRGS A SV  Y L IT+I 
Sbjct: 294  I---IAMELGLIEEMQYEYYFLTVHDIVHFARSKNI-LCQGRGSAANSVVCYCLFITEIA 349

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            P + ++LFERF++ +R   PD D+DF   RR+EVI+Y+  KYG ER A   T  + ++++
Sbjct: 350  PGQINVLFERFISKERNEPPDIDVDFEHQRREEVIQYIYQKYGRERAALAATVITYRSRS 409

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE--- 513
            A+RDVG+A+ +    V +L K +              D  +  E+   +P   + ++   
Sbjct: 410  AIRDVGKAMGLEAGLVGQLAKSL-------AWWDRTGDLIKRMESFGLNPETQKTMQHFF 462

Query: 514  -ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             + Q++ G  RH S H  G +I    +S LVP+      D  + Q++   IE  GL+K D
Sbjct: 463  ALVQQILGFPRHLSQHVGGFIITQDKVSDLVPLENASMPDRTIIQWDKYDIEAMGLLKVD 522

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
             L L  LT L+KSL+ ++Q    V  L+ IP +D  TY +L+   ++G+FQ+ES      
Sbjct: 523  VLALGMLTALRKSLETVSQYDAAVYSLATIPREDPATYAMLSKGDSIGVFQVESRAQMSM 582

Query: 632  LEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
            L  ++P C  D++  +++ RPGPI  D +  Y  R++G E++   +  I  +L+ T G+ 
Sbjct: 583  LPRLRPKCFYDLVIEIAIVRPGPIQGDMVHPYLRRRDGIEEVHYQNDKIKSVLEPTLGIP 642

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVN 748
            I+QEQ +++A + + +S  EAD LRRAM    K   + K +++FI G   NG     A  
Sbjct: 643  IFQEQAIRLAMVAADFSGGEADQLRRAMASWGKNGSLLKFEDKFIQGMLNNGYPLDFAHR 702

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            +FE +  F  YGF +SH+A++A++ Y ++W+K H+P  F  A +  +        +  QD
Sbjct: 703  LFEQIKGFGGYGFPESHSASFALLCYASSWLKCHHPAAFYCALLNSQPMGFYSASQLIQD 762

Query: 809  ARQFNIQIMPPSVNTPCVDFKV---------GDNRIYYSLAAIKGVGTTTARHIMEASAD 859
            AR+  + ++P  VN    +  V           N I   L  IKG+   TA  I+ A  D
Sbjct: 763  ARRHKVVVLPVEVNASGYESHVVLTNHNTSAPPNIIQLGLHMIKGLSILTAERIVLAKGD 822

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
            KPF +L++   R                         + +QLL S D + K    +  NR
Sbjct: 823  KPFTTLKELSLRAQ--------------------LSSADLQLLASADALHK----LTGNR 858

Query: 920  TNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRV----LGFYFSGHPLDVYKPI 974
             N      A        D   LE+ ++   +   E   +      G     HP+ + +  
Sbjct: 859  HNSRWQAAALMPHSPLLDGAELEEDALNTPAPSIEKNIQTDFNSTGLSLRLHPMALLRAQ 918

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
                  K   E  +   G   ++A +V  +Q+  T KG+
Sbjct: 919  QPFNRCKKQSELASIHNGGFAQVAGLVTGRQRPGTAKGT 957


>gi|220912798|ref|YP_002488107.1| DNA polymerase III subunit alpha [Arthrobacter chlorophenolicus A6]
 gi|219859676|gb|ACL40018.1| DNA polymerase III, alpha subunit [Arthrobacter chlorophenolicus A6]
          Length = 1161

 Score =  320 bits (821), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 285/1119 (25%), Positives = 496/1119 (44%), Gaps = 132/1119 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL V +++S   G      +    AAD   A+A TD + L+  ++  +   AAG+ P
Sbjct: 2    SFTHLHVSTAFSAHYGVSWPEELAQAAAADGASALACTDRDGLYGTIKHLKACMAAGLDP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV---STAEGYQRLIELVSRMYLLDQGK 126
            I+G  L +   D  + T            +V+L    +   GY+ L  L+S  +    GK
Sbjct: 62   IVGVDLAVLDDDGDRRTE-------VAGRVVVLAKGHNNGAGYRALCRLISDAHARTSGK 114

Query: 127  QSVRICLSWLQ-EIGTEGL--------IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
                + ++  + E+ +  L        +++  G    + RA       +  +R L  + L
Sbjct: 115  AGGTVPVAVTRAELASRTLDPQTLKPVLLVLIGPDSDVGRA-------MGGRRYLRPRTL 167

Query: 178  FGDRL-----------YVNLQRHRG--YDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
            F   L            V+     G         ++++LA  H +P V TN   +   + 
Sbjct: 168  FKQWLDAMPAGTVVAEIVSQLSTPGSPLSTAHAVRMLRLAEEHRVPAVLTNAVRYCGADG 227

Query: 225  YEAHDVL-MAVAHSTVVSQKDRPRVTP--DHYLKNRSEMVSIF-----------SDLPEA 270
                DVL  A    ++      P + P    +LK  ++M  +            +DL + 
Sbjct: 228  APTADVLDSARTLKSLPELAGEPLLQPTGQGWLKTSNQMRRLAQEVISAAGYGAADLTQL 287

Query: 271  LENTVEIARRCSFI----LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
            L  T  +A  C       +    P++P   E     I ++   EL  +  AG+  R    
Sbjct: 288  LAQTEALADACRIDPAGDMGWKQPVVP---EASIIGINQDPALELVQRCHAGIGRRFPG- 343

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                G   Q    RL+ EL +I  + FS YFL VA+  +  +   +     RGSGA S+ 
Sbjct: 344  --ITGTAEQAMLTRLEHELTIIRNLNFSSYFLTVAEVSRMIQDMGVRAA-ARGSGASSLV 400

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
             Y + ++ ++PL+  L+FERFL+ DR ++PD DID     R  V R +  ++G ERV  +
Sbjct: 401  NYLIDVSQVNPLQHDLIFERFLSQDRATLPDIDIDVESAERHNVYRKIFERFGAERVTLM 460

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE--ARL- 503
                  +A+ A+RD G AL M   +V  + K +    A     +A+ +    RE   R+ 
Sbjct: 461  SMQNGYRARGAVRDAGLALGMDGDEVGEIAKQLWRFSAGKFR-EALQEKPELREFAGRVE 519

Query: 504  -----ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
                  +  +D L++++++L+ L RH S H  G+++GD  L    P+ +     LP++QF
Sbjct: 520  QRDTDGNQQLDLLVDLTERLDRLPRHISMHPCGVILGDATLLDRTPV-QPSGLGLPMSQF 578

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSL----------------------------DFLA 590
            +   ++  G++K D LG++  + +  ++                            D++A
Sbjct: 579  DKHDMDPMGMLKLDVLGVRMQSAMAFAVREVIRLHPSKEEVVAAGNHPRGPQGSGPDYIA 638

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              G  +DL+ +P DD  T+ L+ +  TLG FQ+ES G R+ +  M P    D+I  +SL+
Sbjct: 639  DNG-HIDLNAVPLDDQATFELIRSTHTLGCFQIESPGQRELIGKMAPREFNDLIIDISLF 697

Query: 651  RPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+  D +  +   ++G    V  HP + P+L ET GV ++ EQ+++   +++   L+
Sbjct: 698  RPGPMKSDMVRPFLEHRHGFAPEVYPHPDLKPVLAETHGVTVFHEQILKTFDVMTHCGLA 757

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD  RRA+G +I+E     +E F   A   G +  +   ++  L  F  +GF K+H AA
Sbjct: 758  RADEFRRALGNEIREP--DVEEFFRKAARARGYAPEVLDKVWGTLKAFGSFGFCKAHGAA 815

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +AV +YQ+AW+KTH+P  FLA     +     K +    +AR+  I I+P  +N    ++
Sbjct: 816  FAVPTYQSAWLKTHHPEAFLAGLWEHDPGMYPK-RLLVAEARRLGIPILPLDINRSKDEY 874

Query: 829  KV---------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +V         G   I  SL  I G+  T  + I+   A +PFDSL D  SR    ++++
Sbjct: 875  RVERILSGADSGKLGIRLSLKGIYGLSATELKRIV---AGQPFDSLADLRSR---SRISK 928

Query: 880  RVLESLVFAGALDCF------GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
              ++ L   GA D          +R  L+Q L  +Q       +  T+  E   +   G 
Sbjct: 929  PSIKRLAQLGAFDSLHREAGGTANRADLVQHLQQLQVTGS---RKGTDVLEGQLSFPLGD 985

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
               +                 E  ++    S H +D ++P+L ++G+   ++ +    G 
Sbjct: 986  IELRNVKPGLPQPTLVETVRAELDLMAVDVSTHLMDSHRPVLERLGVTTADKLLGLRNGT 1045

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +A + V+ Q    R G R+ +++  +     ++ FF
Sbjct: 1046 EVLVAGVRVATQTPPMRGGRRVVFISIDDGTGCIDSVFF 1084


>gi|317472886|ref|ZP_07932192.1| DNA polymerase III alpha subunit protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899606|gb|EFV21614.1| DNA polymerase III alpha subunit protein [Anaerostipes sp. 3_2_56FAA]
          Length = 661

 Score =  320 bits (821), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 203/545 (37%), Positives = 308/545 (56%), Gaps = 31/545 (5%)

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
            +S++LEGL RHAS HAAG+VIG   + + VP+ +    D   TQF M  IE+ GL+K DF
Sbjct: 1    MSRRLEGLPRHASMHAAGVVIGKDSIDEFVPLAKGA-DDAVTTQFTMTTIEELGLLKMDF 59

Query: 574  LGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL+TLT++Q ++  + +R G   D++ I  +D + Y +++   T G+FQLES GM+  +
Sbjct: 60   LGLRTLTVIQDAVHLIEKREGKPFDINKIDTEDPKVYEMISQGRTEGVFQLESGGMKTFM 119

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            + ++P+ +E+IIA +SLYRPGP+D I  Y   K  K+ I    P ++ +LK T G I+YQ
Sbjct: 120  KELKPESLEEIIAGISLYRPGPMDFIPRYVKGKVDKDSIRYDCPQLEKILKPTYGCIVYQ 179

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF--------ISGASKNGISKT 744
            EQVMQI   L+GY+L  +D++RRAM KK  + M ++++ F        I G  KNGI + 
Sbjct: 180  EQVMQIVMELAGYTLGRSDLVRRAMSKKKGDVMVRERKNFVYGNEKEGIPGCIKNGIDEK 239

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
             A +I++ +  FA Y FNKSHAAAYAV++YQTA+++ HY  EF+AA +T  + N  K+ +
Sbjct: 240  TANHIWDEMLDFAKYAFNKSHAAAYAVVAYQTAFLRCHYQKEFMAALLTSVLGNTNKVSE 299

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFD 863
            +    R+  I+I+PP +N     F V D  I Y L+AIK +G      I+ E S    + 
Sbjct: 300  YIYACRKMGIKILPPDINKGEGAFSVDDGCIRYGLSAIKSLGKPVIEEILRERSEGGSYK 359

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            SL D   R+ SK++N+R +ESL+ +GALD  GY+R Q +    +I +  Q   K+  +  
Sbjct: 360  SLRDLIERLSSKEMNKRTVESLIKSGALDELGYTRKQQMFVYASILESIQKERKHEISGQ 419

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSV-RFENEQR------VLGFYFSGHPLDVYKPILR 976
             +I       F  +   + F +E   V  F+ EQR      VLG Y SGHPL+    IL 
Sbjct: 420  MSIL-----DFMSEDQQKNFEIEYPDVGEFDKEQRLAMEKEVLGIYVSGHPLEDDVEILE 474

Query: 977  KMGIKGYEESVA-------TIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYE 1028
            ++      +  A        +R     +   ++S  + K TR    + ++T  +     E
Sbjct: 475  RLTTASTADFTAEEDTGQPVLRDKQTCIIGGIISDMKVKLTRTNQNMAFLTLEDLMGTVE 534

Query: 1029 ANFFP 1033
               FP
Sbjct: 535  VIVFP 539


>gi|325104062|ref|YP_004273716.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145]
 gi|324972910|gb|ADY51894.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145]
          Length = 1053

 Score =  320 bits (821), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 275/1027 (26%), Positives = 477/1027 (46%), Gaps = 87/1027 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQV S++S L GA   + +++  A      IAITD N L   +     A   GI  
Sbjct: 2    GYSELQVTSNFSFLRGASHPDELVETAARLGYAKIAITDRNTLAGIVRGHVAAQKHGIGF 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQS 128
            I  C+LD  + D               PS++   +    Y RL  L+S   L  ++GK  
Sbjct: 62   IPACRLD--LLDG--------------PSLLAYPTDLAAYSRLSSLLSVGNLRAEKGK-- 103

Query: 129  VRICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVN 185
               CL + Q++   TEG+  +       +D +F F +    +  L  +++ L  D+L++ 
Sbjct: 104  ---CLLYRQDVFEHTEGIFFIII-PPAELDSSFNFPADFTDD--LKDYQQYLPSDKLFLA 157

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
              R ++G D+ R  ++ QL+    +PL ATN+  +   E  E  D+L  +     + Q  
Sbjct: 158  AVRSYQGNDQKRLYRLQQLSDRLGIPLAATNDVHYHIAERRELQDILTCIREKCTIYQAG 217

Query: 245  -RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             +     + +LK+  EM  +F   P+A+ NT +IA  C F L     + P  +  E    
Sbjct: 218  FKLHANAERHLKSVKEMERLFMQYPDAIANTRKIADVCDFSLTDLKYVYPDELTSE---- 273

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +  + EL      G + R  +        + +  +++  EL  + +   + YFL V D 
Sbjct: 274  GRTPQQELEYLTWIGAQERFGESI------SHELTEQIGEELAFMKKNNLANYFLTVHDL 327

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+  +I +  GRGS A SV  Y L IT +DP R  LLF RF++  R   PD D+DF 
Sbjct: 328  VRYARSKDI-LCQGRGSAANSVVCYCLGITSVDPTRIKLLFARFMSDARNEPPDIDVDFE 386

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI---P 480
             +RR+EVI+Y+  KYG +R A + T    + K A+RDVG+A+ +    +  L   +    
Sbjct: 387  HERREEVIQYIYEKYGRDRAAVVATVTQERYKGAIRDVGKAMGLSVDTISSLSSGVWRYS 446

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            ++    V L     +S+       D  + + L+++++L G  R    H  G VI    LS
Sbjct: 447  SEWLENVDLIEQGLNSK-------DLHLRKTLDLTRQLMGFPRQLGQHTGGFVITQGKLS 499

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
             L P+           ++N + IE  G IK D L L  LT ++K+ + LA++   +DL+L
Sbjct: 500  NLCPIMNARMEGRTCIEWNKEDIEALGFIKVDVLALGMLTCIRKAFN-LAKKHYGLDLNL 558

Query: 601  IPF----DDH-ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
                   D H E Y +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 559  ADISRNEDKHPEVYEMISQADTIGVFQIESRAQMSMLPRLKPKKFYDLVVEVAIVRPGPI 618

Query: 656  --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              D +  Y  R+     ++   P ++ +LK T GV ++QEQ M+IA + +G++ +EAD L
Sbjct: 619  QGDMVHPYLLRRQ-DPSLIKYPPKLENILKRTNGVPLFQEQAMEIAIVAAGFTPAEADEL 677

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RR+M   K   ++   +++ + G   NG  K  A  +F+ +  F  YGF +SHAA++A++
Sbjct: 678  RRSMATFKSHGKVSIFRQKLVDGMVGNGYEKAFAERVFKQIEGFGSYGFPESHAASFALL 737

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF---- 828
             Y ++W+K +YP  F AA +        +  +   DAR+  +++ P  +N    D+    
Sbjct: 738  VYVSSWIKCYYPDIFAAAILNSLPMGFYQPAQLVIDARKHGVEVRPVDINYSFWDYVLEE 797

Query: 829  KVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            + G  R +      + G+       ++ A   KP+ ++    +++ +  L+   LE L  
Sbjct: 798  QAGKYRALRLGFRQVNGLNIEDM-ELLVAHRKKPYSNI----TQLLNIGLSISCLEKLAD 852

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KGTFSDKITLEKFSV 945
            A A    G  R Q L           W      +    +F  +  +     +ITL   + 
Sbjct: 853  ADAFRSIGLDRRQAL-----------WEIAALADSPLALFEGQPSQSMLEPQITLPLLTS 901

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                V+   +          HPL++ +  L  + +    +  A   G  +++A +++ +Q
Sbjct: 902  GEHVVQ---DYVSTSLSLKAHPLNLLRQQLDLLKVTSTRDLDAVPDGAQVKVAGLILIRQ 958

Query: 1006 QKKTRKG 1012
            +  T KG
Sbjct: 959  RPGTAKG 965


>gi|328474631|gb|EGF45436.1| error-prone DNA polymerase [Vibrio parahaemolyticus 10329]
          Length = 1024

 Score =  320 bits (821), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 226/746 (30%), Positives = 365/746 (48%), Gaps = 62/746 (8%)

Query: 180 DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
           +RL+V +QRH G D     +   +LA+  +LP+ A    L  + E      +L A+ H  
Sbjct: 144 NRLWVAIQRHLGGDDDAYTNHCEKLAHELQLPITACGGVLMHTAERLPLQHILTAIKHGC 203

Query: 239 VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            V +    R++  +  L+  +++V I+   PE LE +  IA  C F L            
Sbjct: 204 SVDKLGFERLSNAERTLRPLNKLVRIYK--PEWLEESKYIADLCEFKL------------ 249

Query: 298 KECDDIQKEEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               D++ E   EL           R     G E R  +G        +D  Q ++ EL 
Sbjct: 250 ---SDLKYEYPTELIPNGYTPNSYLRMLVEQGKERRFPEGV------PEDINQTIENELR 300

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
           +I  +K+  YFL + D + +AK+  I +  GRGS A SV  Y L IT +DP + S+LFER
Sbjct: 301 LIEDLKYHYYFLTIHDIVMFAKQQGI-LYQGRGSAANSVVCYCLEITAVDPRQISVLFER 359

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           F++ +R   PD D+DF  +RR+EVI+Y+  KYG ER A   T  S + K+A+R+VG+AL 
Sbjct: 360 FISKERKEPPDIDVDFEHERREEVIQYIYKKYGRERAALAATVISYRFKSAVREVGKALG 419

Query: 467 MPYSQVDRLCKLIP-NDPAHPVSLQAIADDSRFREARLADPSV--DRLLEISQKLEGLYR 523
           +  +Q+D   K +   D +     Q I       E  L   S+   + +++  ++ G  R
Sbjct: 420 IEETQLDFFIKNVNRRDRSQGWQAQII-------ELGLQPESLKGQQFIQLVNEIIGFPR 472

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
           H S H  G VI   PL +LVP+      D  + Q++   +E   L+K D L L  L  ++
Sbjct: 473 HLSQHVGGFVISSGPLYELVPVENAAMEDRTIIQWDKDDLESLELLKVDVLALGMLNAIR 532

Query: 584 KSLDFLA---QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           K    +    QR + +       DD   Y +L    T+G+FQ+ES      L  ++P C 
Sbjct: 533 KCFQLIEKHHQRSLSIAEITRRQDDPHVYRMLQKADTVGVFQIESRAQMSMLPRLKPACY 592

Query: 641 EDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            D++  +++ RPGPI   +V+    R+NG+E +      +  +L+ T GV I+QEQV+++
Sbjct: 593 YDLVIQIAIVRPGPIQGDMVHPFLKRRNGEEPVSYPSEAVKSVLERTMGVPIFQEQVIKL 652

Query: 699 AQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
           A + +G+S  EAD LRRAM   K   ++ K K + ++G  + G     A  IFE +  F 
Sbjct: 653 AMVAAGFSGGEADQLRRAMASWKKNGDLAKFKPKLLNGMQERGYDLAFAERIFEQICGFG 712

Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
           +YGF +SH+A++AV++Y +AW+K +YP EF  A +  +        +  QDAR+  ++++
Sbjct: 713 EYGFPESHSASFAVLAYCSAWLKYYYPAEFYTALLNSQPMGFYSSSQLVQDARRHGVEVL 772

Query: 818 PPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
           P  VN       +     G   +      +KG    +A  ++E      + S+++    V
Sbjct: 773 PICVNHSYYQHHLIQRPNGRLGVQLGFRLVKGFNEESATRLVERRPKTGYHSIQE----V 828

Query: 873 DSKKLNRRVLESLVFAGALDCFGYSR 898
                +RR +E L  A A      +R
Sbjct: 829 KQILRSRRDIELLASANAFQILSGNR 854


>gi|116670865|ref|YP_831798.1| DNA polymerase III subunit alpha [Arthrobacter sp. FB24]
 gi|116610974|gb|ABK03698.1| DNA polymerase III, alpha subunit [Arthrobacter sp. FB24]
          Length = 1166

 Score =  320 bits (820), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 282/1128 (25%), Positives = 498/1128 (44%), Gaps = 150/1128 (13%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL V +++S   G    + +    AAD   A+A TD + L+  ++  +   +AG+ P
Sbjct: 2    SFTHLHVSTAFSAHYGVSWPDELAQAAAADGAKALACTDRDGLYGTVKHLKACMSAGLDP 61

Query: 70   IIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLV---STAEGYQRLIELVSRMYLLDQG 125
            ++G  L + D   +L+    G+        +V+L    +   GY+ L  L+S  +    G
Sbjct: 62   VVGVDLAVFDDDGDLRTQLAGR--------VVVLAHGHNDGAGYRALCRLISDAHARTSG 113

Query: 126  KQS---------VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            K             I    L     E ++ +  G    + RA       +  +R L  + 
Sbjct: 114  KAGGVVPVAVTRAEIASRALHPETLEPVLTVLVGPDSDVGRA-------MGGRRYLRPRT 166

Query: 177  LFGDRL--------YVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEE 223
            LF   L           +  H              ++++LA  H +P V TN   + +E+
Sbjct: 167  LFKQWLDGMPKGTVAAEVVSHLSAPGEALSTAHAVRMLKLAAEHGVPAVLTNAVRYCAED 226

Query: 224  DYEAHDVL-MAVAHSTVVSQKDRPRVTPDH--YLKNRSEMVSI-----------FSDLPE 269
                 DVL  A    ++      P + P+   +LK  ++M+ +            +DL  
Sbjct: 227  GAATADVLDSARTLKSLPELTAEPLLQPNGRGWLKTSAQMLELGQEIIHAAGYGATDLTR 286

Query: 270  ALENTVEIARRCSFI----LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
             L  T  +A RC       +    P++P   E     I  +   EL  +  AG+  R   
Sbjct: 287  LLGQTEALADRCRMDPVTDMGWKRPVVP---EASVIGIAGDPLVELTLRCEAGIGRRFPG 343

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                 G    + R RL+ EL +IA + F+ YFL VA+  +      +     RGSGA S+
Sbjct: 344  ---ISGKPEAEMRARLEHELRIIANLGFASYFLTVAEVSRMILDMGVRAA-ARGSGASSL 399

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
              Y + ++ ++PL+  L+FERFL+ DR ++PD DID     R  V R + +++G ERV  
Sbjct: 400  VNYLIDVSQVNPLQHDLIFERFLSRDRATLPDIDIDVESAERHNVYRRIFDRFGAERVTL 459

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
            +      +A+ A+RD G AL M    +  + K +    A             FREA +  
Sbjct: 460  MSMQNGYRARGAVRDAGMALGMDDGDIGEIAKQLWRFSAR-----------NFREALVEK 508

Query: 506  PSV------------------DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            P +                  D L++++++L+ L RH S H  G+++GD  L    P+ +
Sbjct: 509  PELKEFAGRVEQRDFAENQQLDLLVDLTERLDRLPRHISMHPCGVILGDATLLDRTPV-Q 567

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL--------------------- 586
                 LP++QF+   ++  G++K D LG++  + +  ++                     
Sbjct: 568  PSGLGLPMSQFDKHDMDPMGMLKLDVLGVRMQSAMAFAVREVIRLHPTKAEVVAAGAHRP 627

Query: 587  -------DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
                   D++A  G ++DL+ +P DD  TY L+ +  TLG FQ+ES G R+ +  M P  
Sbjct: 628  GPDGTGPDYIAADG-RIDLNAVPLDDEPTYELIRSTHTLGCFQIESPGQRELIGKMAPRE 686

Query: 640  IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
              D+I  +SL+RPGP+  D +  +   ++G    V  HP + P+L+ET GV ++ EQ+++
Sbjct: 687  FNDLIIDISLFRPGPMKSDMVRPFLEHRHGFAPEVYPHPDLKPVLQETHGVTVFHEQILK 746

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
               +++   L+ AD  RRA+G ++ E   K +E F   A   G +  +   ++  L  F 
Sbjct: 747  TFDVMTKCGLARADEFRRALGNELLEP--KVEEFFRKEARARGYTPEVVDKVWGTLKAFG 804

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             +GF K+H AA+AV +YQ+AW+K H+P  FLA     +     K +    +AR+  I I+
Sbjct: 805  SFGFCKAHGAAFAVPTYQSAWLKAHHPEAFLAGLWEHDPGMYPK-RLLVAEARRLGIPIL 863

Query: 818  PPSVNTPCVDFKV-----GDNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
            P  +N    +++V     G +R    I  SL  I G+     + I+   A +P+DSL D 
Sbjct: 864  PLDINRSHAEYRVERVGSGPDRGKLGIRLSLNGIYGLSGAELKRIV---AGQPYDSLADL 920

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             +R    +L++  ++ L   GA D             D +Q + Q ++   + K  ++  
Sbjct: 921  RAR---SRLSKPSIKRLAQLGAFDTLHRESGGAANRADLVQ-HLQALQNRPSKKGVDVIE 976

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQR----VLGFYFSGHPLDVYKPILRKMGIKGYE 984
             +       + L     E  +    +  R    ++    S H +  ++P+L K+G+   +
Sbjct: 977  GQLSLPLGDVELRNLKAELPAPSMIDNVRAELDLMAVDVSEHLMTSHRPLLDKLGVTTAD 1036

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +    G  + +A + ++ Q    R G R+ +++  +     ++ FF
Sbjct: 1037 KLLGLRNGTEVLVAGVRIATQTPPMRGGRRVVFISIDDGTGCVDSVFF 1084


>gi|326795443|ref|YP_004313263.1| Error-prone DNA polymerase [Marinomonas mediterranea MMB-1]
 gi|326546207|gb|ADZ91427.1| Error-prone DNA polymerase [Marinomonas mediterranea MMB-1]
          Length = 1057

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 253/917 (27%), Positives = 441/917 (48%), Gaps = 79/917 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L V SSY+  +GA     ++++        IAITD  +L   ++  + +   GI  I
Sbjct: 25  YAELHVISSYTFQQGASHPWELVERAQKLNYAGIAITDECSLAGVVKAHEASKEHGIPLI 84

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSV 129
           IG    +                    S+++L  + E Y++L  L+++     ++G   +
Sbjct: 85  IGSTFQVKGF-----------------SLIVLAPSIEAYRKLSMLITKGRRNAEKGHYHL 127

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           ++   +L E+  +G + +   +   ++++F   +S + +         + + +++ LQ+ 
Sbjct: 128 QL-EDYLSEL--QGCLFIIVITDNTLEQSFSSITSNIKK-----ISDCYPNNVWLGLQQL 179

Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQKDRPR 247
               DR ++  V +L     LP+ A ++            DV+ A+  H++V     R  
Sbjct: 180 LTPTDRAKKQTVYRLFSMLRLPVTAVSSVDMHEPSRQPLRDVMTAIRLHASVNKLNGRQA 239

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              + +L++  ++  ++SD  + LE ++ I  RC F L       P+ +  E        
Sbjct: 240 PNAETHLRSPKKLRKLYSD--QELEESLTILERCHFSLDELKYDYPKDLVPEGTT----P 293

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              L+     GL  R +          Q   ++++ EL++I  +KF  YFL V D +++A
Sbjct: 294 SGYLKQLTYEGLHRRYSDCV------PQAIEKQIEKELSIIKELKFEHYFLTVWDIVKFA 347

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           +K NI +  GRGS A S   Y L IT+++P    LLFERF++ +R   PD D+DF  +RR
Sbjct: 348 RKRNI-LCQGRGSAANSAVCYCLGITEVNPANTDLLFERFISKERHEPPDIDVDFEHERR 406

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC-KLIPNDPAHP 486
           +EVI+Y+  +YG ER A   T  + +AK+A+RDVG+AL      + +L  KL   D A P
Sbjct: 407 EEVIQYLYQRYGRERAALAATVITYRAKSAIRDVGKALGYEEHFLSKLIKKLDRRDKATP 466

Query: 487 VSLQAIADDSRFREARLADPS--VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             L+ ++D         A PS      L++ +++ G  RH S H  G VI    +  LVP
Sbjct: 467 W-LKQLSDYGN------AKPSYQFQLFLKLVEEILGFPRHLSQHVGGFVIAAERVDHLVP 519

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
           +         + Q++   +E  GL+K D L L  LT ++KSL+ +++ +G    L  IP 
Sbjct: 520 VENASMEGRTIIQWDKDDLESLGLLKVDVLALGMLTAIKKSLNLISKIKGAPFTLQSIPR 579

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
           +DH+ Y +L    ++G+FQ+ES      L  ++P+C  D++  V++ RPGPI   +V  Y
Sbjct: 580 EDHKVYDMLQKGESIGVFQIESRAQINMLPRLKPNCFYDLVIQVAIVRPGPIQGGMVHPY 639

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-- 719
             R+ G + I      I  +L  T GV I+QEQV+++A + + +S  EAD LRRAM    
Sbjct: 640 LQRRAGTQAINYPSAEIKSVLNRTLGVPIFQEQVIKLAMVAASFSAGEADQLRRAMAAWK 699

Query: 720 ---KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
              ++K   DK K+    G  + G  +  A  +   +  F +YGF +SHAA++A++ Y +
Sbjct: 700 RTGRLKPFQDKLKQ----GMLERGYDEVFADQLCMQIQGFGEYGFPESHAASFAILVYFS 755

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------ 830
           +W+K +YP  F  + +  +        +  QDA++  + + P  V     D  +      
Sbjct: 756 SWLKHYYPTVFCCSLLNSQPMGFYTPYQLIQDAQRNGVIVKPVCVQHSEWDHTLERLSES 815

Query: 831 -----GDNRIYYSLA--AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                 D +    L    +KG+    +  + +   + PF SLE+F +RV   K N+R  E
Sbjct: 816 EQQNQQDKQFAIRLGFRLVKGMSHEGSVRLTQKRGNTPFTSLEEFLNRV---KPNKRDKE 872

Query: 884 SLVFAGALDCFGYSRMQ 900
           +L  +GA      +R Q
Sbjct: 873 ALASSGAFSVLSGNRFQ 889


>gi|320532668|ref|ZP_08033463.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 171
            str. F0337]
 gi|320135114|gb|EFW27267.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 171
            str. F0337]
          Length = 806

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 226/729 (31%), Positives = 345/729 (47%), Gaps = 75/729 (10%)

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L+ EL VI  + F GYFLIV   +++  ++ I +  GRGS A S   YAL IT +D +R 
Sbjct: 26   LNHELEVIESLGFPGYFLIVHAIVEFCAQSGI-LCQGRGSAANSAVCYALGITAVDAVRH 84

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             +LFERFL+P R   PD D+D    RR+EVI++V ++YG ER AQ+    S + ++A+RD
Sbjct: 85   QMLFERFLSPGRAGYPDIDLDIEACRREEVIQHVYSRYGRERAAQVANVISYRPRSAVRD 144

Query: 461  VGRALQMPYSQVDRLCKLIPN-DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
              RAL  P    D   K +       P  L    DD       + +P    +L+I++KL 
Sbjct: 145  AARALGHPAGVQDAWAKQMERWTSVRPGGLTGQGDD-------VPEP----VLDIAEKLL 193

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
             L RH   H  G+V+  RP++++ P+      +  V Q++     +AGL+KFD LGL  L
Sbjct: 194  RLPRHLGVHPGGMVLCGRPVTEVCPVRWAAMDNRSVLQWDKDDCAEAGLVKFDLLGLGAL 253

Query: 580  TLLQKSLDFLAQR------------------GVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            T L+ +   LA+R                  G    L  +P +D   Y LLT   T+G+F
Sbjct: 254  TALRLAFTTLAERRQVVPDAVTEGELRTSQSGRPWGLHTLPEEDPAVYRLLTAADTVGVF 313

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLID 679
            Q+ES      L   +P    DI+  V+L RPGPI  D +  Y  R+  +E++  +H  + 
Sbjct: 314  QVESRAQMATLPRFRPRTFYDIVVEVALIRPGPIQGDAVNPYIRRRLKREEVTYLHDSLK 373

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASK 738
            P L +T GV ++QEQ+MQIA   +G+S +EAD LR+AMG K+  E MD  +++ I+G   
Sbjct: 374  PALTKTLGVPLFQEQLMQIAVDAAGFSPAEADTLRQAMGAKRSIERMDALRDKLIAGMMS 433

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             GI    A  I+  L  FA++GF +SHA ++A + Y +AW+K   P +F A  +  +   
Sbjct: 434  RGIDSPTAEKIYSKLRSFAEFGFPESHAFSFAYLVYASAWLKVRKPEDFYAGVLAAQPMG 493

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---------------------------- 830
                +    DA +  ++++P  +N       V                            
Sbjct: 494  FWSPQSLVADALRHGVRVLPADINRSLAQATVEQWEDHQDADRSDQWGPLRPHPAAPSAL 553

Query: 831  ---GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                D  +   LA +KG+G   A+ I+ E  A  P+  L D   RV    L+R  LE+L 
Sbjct: 554  DVHDDLAVRLGLAPLKGLGERAAQAIVTERRAHGPYRDLADLARRV---SLSRSRLEALA 610

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             +GALD  G  R Q L +   +        + R   H+   A  + T        +    
Sbjct: 611  VSGALDSLGTERRQALWAAGVLSDEHG---RRRGTSHQGRGAWCQPTLPGTAVGARAPTL 667

Query: 947  NSSVRFENEQRVL---GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
             +    E +   L   G    G PL + +P L   G+    +      G+ +R+A +V  
Sbjct: 668  PAMTDRERQGADLSLTGVSTHGSPLRLLRPALAADGVLSAADLAGQEHGSRVRVAGVVTH 727

Query: 1004 KQQKKTRKG 1012
            +Q+  T  G
Sbjct: 728  RQRPHTASG 736


>gi|254461480|ref|ZP_05074896.1| DNA polymerase III, alpha subunit subfamily, putative
           [Rhodobacterales bacterium HTCC2083]
 gi|206678069|gb|EDZ42556.1| DNA polymerase III, alpha subunit subfamily, putative
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 1102

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 266/941 (28%), Positives = 434/941 (46%), Gaps = 81/941 (8%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSALEFSQKAC 63
           S+  L   S+++ L GA     ++ + A     AIAITD N+L      ++AL+  ++A 
Sbjct: 2   SYAELATTSNFTFLRGASHPEELVTRAAELGLQAIAITDHNSLAGVVRAYAALKELKRAR 61

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE---------------- 107
              I+  I  +  +D     ++ +Q   P P    +  L+  A                 
Sbjct: 62  EDTIR--IRSETQLDHSSRQEVGDQQHIPRPQTVHLPKLIVGARLMLRDSHIDWIALPKD 119

Query: 108 --GYQRLIELVSRMYLLDQGKQSVRICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNS 163
              Y RL    +R+  L + +     C   L ++  G  G+I++     GP+ R    + 
Sbjct: 120 RAAYSRL----TRLLTLGKRRAEKGQCHLDLPDLLEGCSGMILIAL-PRGPL-RKTTHDI 173

Query: 164 SQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
           +Q+        ++ +   +++    R+ G D+   +    LA     P+VA  + L    
Sbjct: 174 TQM--------QRRYPSHVFLGAAPRYNGSDQAYLADCAHLALKTSAPMVAVGDPLMHHG 225

Query: 223 EDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
           +  +  DVL  +  H T+     R     +  LK  ++M  +F D P AL+ +VEIA RC
Sbjct: 226 KRRQLADVLTCMREHITIDQIGTRALPNAERRLKGHADMSRVFRDHPAALQRSVEIAARC 285

Query: 282 SFILQVHAPILPRFIEKECDDIQKEE--ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
           SF L   +   P       D+I + E  +  L   A  G+  R   GA  K       + 
Sbjct: 286 SFCLSELSYEYP-------DEISEGEPPQERLTRLAYEGMMRRYPNGATEKA------KA 332

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
           ++  EL ++  + F  YFL V D +Q+A+   I +  GRGS A S+  Y L IT++ P  
Sbjct: 333 QIKKELKLVKALDFPAYFLTVHDIVQFARSQGI-LCQGRGSAANSILCYLLGITEVSPEV 391

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            +++ ERF++  R   PD D+DF  +RR+EVI+++  KYG  R     T    + + A+R
Sbjct: 392 ITMVVERFVSEARAEPPDIDVDFEHERREEVIQHIYAKYGRHRAGLCATVTHFRTRGAIR 451

Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE--ARLADPSVDRLLEISQK 517
           +VG+ + +       L   I             AD  R RE    L D  + + + +  +
Sbjct: 452 EVGKVMGLSEDVTAGLSSQIWGQS------DKGADPERVRELGLNLEDRRLAQTIRLIGE 505

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
           + G  RH S H  G VI    L +L P+      D  V +++   I+  G++K D LGL 
Sbjct: 506 IIGFPRHLSQHVGGFVITKERLDELCPIENAAMEDRTVIEWDKDDIDTLGILKVDILGLG 565

Query: 578 TLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            L+ ++KS D L +   K + ++ IP +D ETY +L     +G+FQ+ES      L  M 
Sbjct: 566 MLSCIRKSFDLLQEHDRKTLSIAAIPQEDPETYDMLCVADAIGVFQVESRAQMNFLPRML 625

Query: 637 PDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
           P    D++  V++ RPGPI   +V  Y NR+ G+E++      ++ +L +T GV ++QEQ
Sbjct: 626 PRKFYDLVIEVAIVRPGPIQGGMVHPYINRRQGREEVHFPSKELENVLGKTLGVPLFQEQ 685

Query: 695 VMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            MQIA + +G+  SEAD LRR++   +    +   K+RFI+G    G  +  A   F  +
Sbjct: 686 AMQIAVVAAGFDPSEADQLRRSLATFRRMGTISTFKDRFINGMLARGYDENFAQRCFAQI 745

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             F +YGF +SHAAA+A++ Y +AW+K H+P  F  A +  +        +  +DAR+ +
Sbjct: 746 EGFGEYGFPESHAAAFAMLVYVSAWLKKHHPAVFACALLNSQPMGFYAPAQIVRDAREHH 805

Query: 814 IQIMPPSVNTPCVDFKV---GDNRIYYSLA--AIKGVGTTTARHIMEASADKPFDSLEDF 868
           I++ P  VN    D  +   GD  +   L    IKG   T A  I+ A  +   D  E  
Sbjct: 806 IEVRPICVNASTWDNTLERRGDGALALRLGFRQIKGFRETDADWIVAARGNGYRDP-EAV 864

Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
             R     +   VLE L  A      G++R   L  +  I+
Sbjct: 865 WLRAG---VAPSVLERLAEADGFSDMGHTRRDALWLVKAIR 902


>gi|254441785|ref|ZP_05055278.1| DNA polymerase III, alpha subunit subfamily, putative
           [Octadecabacter antarcticus 307]
 gi|198251863|gb|EDY76178.1| DNA polymerase III, alpha subunit subfamily, putative
           [Octadecabacter antarcticus 307]
          Length = 1102

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 248/890 (27%), Positives = 424/890 (47%), Gaps = 76/890 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +V L + + +S L GA    ++     A     +A+ D N L   +    +   A ++P+
Sbjct: 29  YVELGLCTCFSFLRGASDAVDLAQAAWALGYDCLAVADINTLAGVVRIWSQGRKAALRPL 88

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS--RMYLLDQGKQS 128
           IG ++++       ++ +    +PT           + Y RL  L+S  RM  +D   Q+
Sbjct: 89  IGARVEL-------VSGEAFLVYPT---------DRQAYGRLSRLISKGRMADVDGNWQT 132

Query: 129 VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              C   L ++ T  +GLI++   S    D   +    +   K L   + L    LY   
Sbjct: 133 KGACDLTLSDLATHADGLILIAVPSD---DVEAYGRGLKRLCKALPQMRYLAASYLY--- 186

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDR 245
              RG D  R +++  LA  H L L+A+N  L+ + +     D++  +  H T+V    R
Sbjct: 187 ---RGDDHARINRLDALAGQHGLRLLASNEVLYHAPDRRPLQDIMTCIREHCTLVDAGSR 243

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-----QVHAPILPRFIEKEC 300
            +   + +LK+ +EM  +F+  P A+  T ++A   +F L     +  + ++P+      
Sbjct: 244 LQPNAERHLKSPAEMQRLFTQWPHAIRATRDVADAIAFDLGELSYEYPSEVIPQ------ 297

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D+  +E   L      G   R   G       A   +  L  EL +I ++  + YFL +
Sbjct: 298 -DMTPQEY--LEKLIWKGAAWRYPDGV------ADAIKAVLRKELAMIEKLDIARYFLTI 348

Query: 361 ADFIQWAKKNNIP--VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            D I +A+    P  +  GRGS A S   Y L IT +DP + SLLFERF++ +R   PD 
Sbjct: 349 HDIIDFARNVAQPEILCQGRGSAANSAVCYVLGITAVDPTQHSLLFERFISEERREPPDI 408

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DF  +RR+EVI+++  KYG ER     T    + ++A+R+VG+++ +       + K 
Sbjct: 409 DVDFEHERREEVIQHIYTKYGRERAGLCATVIHYRPRSAIREVGKSMGLSEDVTGAMAKT 468

Query: 479 IPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
           I       V      D    REA L  +DP + R + ++ +L G+ RH   H  G ++ +
Sbjct: 469 IWGSWGRDV------DGEHAREAGLDMSDPVLRRTVLLAGQLIGMPRHLGQHVGGFILTE 522

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK 595
           R L++ VP+      +    +++   I+  G++K D L L  LT ++KS DF+ A  G K
Sbjct: 523 RALTETVPIGNGAMPERTFIEWDKDDIDALGILKVDILALGMLTCIRKSFDFISAHYGTK 582

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             L+ +P +D   Y +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 583 FTLATVPQEDPRVYGMLCKGDSIGVFQVESRAQINMLPRLRPRTFYDLVIEVAIVRPGPI 642

Query: 656 --DNIVVYNNRKNGKEKIV--SIHPLIDP-----MLKETQGVIIYQEQVMQIAQLLSGYS 706
             D +  Y  R+NG+E I   S  P  DP     +L  T GV I+QEQ M++A   + +S
Sbjct: 643 QGDMVHPYLRRRNGEEVITYSSPGPPHDPAELKNILGRTLGVPIFQEQAMKVAIEAAEFS 702

Query: 707 LSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +EA+ LR+AM   + +  ++  +++ +    + G  +  A   F+ +  F +YGF +SH
Sbjct: 703 PAEANELRKAMATFRSRGTIELLQDKMVGRMVRRGYDEDFAQRCFDQIKGFGEYGFPESH 762

Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
           AA++A + Y ++W+K HYP  F AA +  +        +  +DA+   ++I PP VN   
Sbjct: 763 AASFAQLVYVSSWLKCHYPDAFCAALLNSQPMGFYAPAQLVRDAKDHGVEIRPPDVNYSH 822

Query: 826 VDFKVGDNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            D  +  ++    +   L  I G     A  ++ A  D PF  L+    R
Sbjct: 823 WDSTLEPSQDGFALRLGLRQITGFQIDAATRLVNAR-DAPFRDLKALQDR 871


>gi|319943592|ref|ZP_08017874.1| DNA-directed DNA polymerase III alpha subunit [Lautropia mirabilis
           ATCC 51599]
 gi|319743407|gb|EFV95812.1| DNA-directed DNA polymerase III alpha subunit [Lautropia mirabilis
           ATCC 51599]
          Length = 1122

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 251/843 (29%), Positives = 394/843 (46%), Gaps = 57/843 (6%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  L   S ++ L GA S   + ++  A    A+AITD  +L   +   + +   G+ 
Sbjct: 47  PAYAELHCLSDFTFLRGASSAAQLFERARACGYQALAITDECSLAGIVRAFEASRNTGVP 106

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG---YQRLIELVSRMYLLDQG 125
            I+G +  +       +  Q +  +  + S++     A G   Y+   E  SR  L   G
Sbjct: 107 LIVGSEFRLVDGTRFVLLVQDQAGYEALCSLITTGRRAAGKGCYRLTREDFSRSGLDLSG 166

Query: 126 KQSVRICLSWL-------------QEIGTEGLIMLTG-GSSGPIDRAFFFNSS---QVAE 168
                +CL WL              E   + L  L G G+ G  D A     S   ++A 
Sbjct: 167 L----LCL-WLPSPHPDEVQADAPDEQQADVLDGLDGLGARGMDDEAPAVPESGEDRLAL 221

Query: 169 KRLLTFKKLFGDR-LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
           +R    +++F    L V L R R  D      ++ LA    L  VA  +     +     
Sbjct: 222 ERAAWVRRIFPHAWLAVELHRDRD-DAAVLRHLLALAQKTGLTPVACGDVHMDLKRRRAL 280

Query: 228 HDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            D L A+ H   +++         + +L+ R  +  I+   P  L  T+EIA+RC+F L 
Sbjct: 281 QDTLTALRHRRPLTEAGGWLFRNGERHLRRREALAGIYP--PALLAETLEIAKRCTFRLD 338

Query: 287 VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                 P+ +  E         + LR+ A  GL  R  QGA       +     ++ EL 
Sbjct: 339 SLQYRYPQELVPE----GHTPTSWLRHLAEQGLRWRWPQGA------PERVVGLVEHELA 388

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
           +IA + +  YFL V D +++A+   I +  GRGS A S   + L I ++DP R  +L ER
Sbjct: 389 LIADLGYEPYFLTVHDIVRFARSQGI-LCQGRGSAANSAVCFVLGIVEVDPSRMQVLVER 447

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           F++ +R   PD D+DF  +RR+EV +Y+  KYG  R A        + ++A RDV RAL 
Sbjct: 448 FISRERNEPPDIDVDFEHERREEVFQYIYGKYGRARAALTANVICYRGRSAARDVARALG 507

Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADD--SRFREARL--ADPSVDRLLEISQKLEGLY 522
            P  QV  +                  DD   R  EA    A P + RLL + + L    
Sbjct: 508 FPPDQVTAIGACFGRG--------GYGDDVTDRLAEAGFDPATPLMQRLLHLVEALRDHP 559

Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
           RH S H  G VI D PLS+LVP+         + Q+N   ++  G++K D L L  LT +
Sbjct: 560 RHLSQHVGGFVISDGPLSRLVPIENAAMPARTIIQWNKDDLDVLGMLKVDCLALGMLTCV 619

Query: 583 QKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
           +K+L  LA+ RG  +  + IP DD  TY +++   T+G+FQ+ES      L  ++P C  
Sbjct: 620 RKTLALLARHRGRHLTPATIPPDDDATYDMISAADTVGVFQIESRAQMSMLPRLRPRCFY 679

Query: 642 DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
           D++  V++ RPGPI  D +  Y  R+ G E +      +  + + T GV ++QEQ M++A
Sbjct: 680 DLVIQVAIVRPGPIQGDMVHPYLRRRQGLEPVNYPSEALREVFERTLGVPLFQEQAMKLA 739

Query: 700 QLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            + +GY+  EAD LRR+M    +  +++  ++R + G  + G S   A  IFE L  FA+
Sbjct: 740 IVAAGYTPGEADHLRRSMAAWRRHGDLEIHRQRLVGGMQERGYSLAFAERIFEQLKGFAN 799

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           YGF +SHA A+A+I+Y + W+K H P  F+ A +  +           QDAR+  + + P
Sbjct: 800 YGFPESHACAFALITYVSCWLKRHEPAAFVCALLNSQPMGFYSASSLLQDARRHGVTVRP 859

Query: 819 PSV 821
             V
Sbjct: 860 VDV 862


>gi|204305829|ref|YP_002224646.1| gp202 [Mycobacterium phage Cali]
 gi|197312802|gb|ACH63155.1| gp202 [Mycobacterium phage Cali]
          Length = 1160

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 252/980 (25%), Positives = 438/980 (44%), Gaps = 113/980 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-AAGIQPIIG 72
           L  H   S+L+G      +  +       ++AITD +++     F QKAC AAG++P++G
Sbjct: 37  LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRF-QKACQAAGVKPVLG 95

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            +    +  N+  + + KT       IVLL     G + L  L S  Y  +Q  +  ++ 
Sbjct: 96  AEQRWML--NIADSRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKPQLD 153

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              L +   +GL    G            +   +A +       +FGD  Y  L   +  
Sbjct: 154 PGLLMQY-RDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTWQFI 212

Query: 193 DRYRESQ-------------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           +     Q              V+LA    +PLV  N++ +  E  ++ H  +  ++  + 
Sbjct: 213 NPVSPEQQALNAKMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMSTGSW 272

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIF-------SDLPEALENTVEIARRCSFILQVHAPIL 292
              +   R     ++ N  E+           S + EA+ N+  IA +C+  +      +
Sbjct: 273 KKDQHEERGHAADWMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKLLAM 332

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           PR    + +D                +E    +  + KG     YRQRL++E  +I    
Sbjct: 333 PRLHATDAEDAAAFRR---------AIEEGFKRFVVDKGLPEDVYRQRLEYEAKLIIDKN 383

Query: 353 FSGYFLIVADFIQWAKKNNIP-------------VGPGRGSGAGSVTAYALTITDIDPLR 399
            +GYF +VAD++  A+                   GPGRGS  GS+  Y + IT IDP++
Sbjct: 384 MAGYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIK 443

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
           + L+FERF+NPDR   PD D+DF + ++  V +Y+  +YG   V  I T    + +  L+
Sbjct: 444 YDLMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQ 503

Query: 460 DVGRALQMPYSQVDRLCKLI---------------PNDPAHPVS---LQAIADDSRFREA 501
           D+ RA  +P+ ++ ++  L+               P D   P     LQ I  +      
Sbjct: 504 DLCRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPEDEDPPTWGEVLQEIGGELAPYAK 563

Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL-SQLVPMYRDVRSDLPVTQFNM 560
           +  D     L  + +++  + R    H AG+++   P+   L+P  R   +D+  TQF+M
Sbjct: 564 KYPD-----LFNLMEQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDM 618

Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF---------------- 603
             +E+ G +K D L  K L +L  + D + +R GV +D     F                
Sbjct: 619 YELEELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVIALNEER 678

Query: 604 --DDHETYHLLTTKGTLGIFQLES-SGMRQALEGMQPDCIEDIIALVSLYRPGPI---DN 657
             +D   Y  +    T G+FQ+ + +G + A+   +P  + D+  L S+ RPG       
Sbjct: 679 YLNDPAIYDQIDRGQTAGLFQVNTPAGTKLAMR-FKPRSVVDMADLASINRPGVTRVPGL 737

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLK-----ETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           +  Y  R++G+E++   HPL++ +        T G+++YQEQ+++ A+ L+G++  EA+ 
Sbjct: 738 LDKYIERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAER 797

Query: 713 LRRAMGKKIKEEMDKQKERFISGASKN------GISKTIAVNIFELLAKFADYGFNKSHA 766
           LR+ +GKK  E +++ + +F+ G   N      G ++ +A  I++ L     Y FNKSH 
Sbjct: 798 LRKGIGKKKMEIINELEPKFLDGCMANSEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHG 857

Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
             YA+   Q AW+K +Y  EF+   + +  D   K  +F ++ RQ    ++PP VN    
Sbjct: 858 VGYALQPCQEAWVKHYYFDEFITGCLVIHTD---KTIRFLRECRQRKRAVLPPDVNQSGA 914

Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD-SKKLNRRVLESL 885
            F + D  I + L  I G+G      I+   A++PF  L+DF +R   S    + V+++L
Sbjct: 915 GFTLTDEGIRFGLTDISGIGDAAMPDIL---ANRPFKDLDDFLARASKSGGAKKGVVDAL 971

Query: 886 VFAGALDCFGYSRMQLLQSL 905
           +  GA D  G  R  +L+ +
Sbjct: 972 IKVGAFDFTGEHRQVMLEKV 991


>gi|255928078|gb|ACU41697.1| gp202 [Mycobacterium phage LRRHood]
          Length = 1172

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 252/980 (25%), Positives = 438/980 (44%), Gaps = 113/980 (11%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-AAGIQPIIG 72
            L  H   S+L+G      +  +       ++AITD +++     F QKAC AAG++P++G
Sbjct: 49   LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRF-QKACQAAGVKPVLG 107

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             +    +  N+  + + KT       IVLL     G + L  L S  Y  +Q  +  ++ 
Sbjct: 108  AEQRWML--NIADSRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKPQLD 165

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
               L +   +GL    G            +   +A +       +FGD  Y  L   +  
Sbjct: 166  PGLLMQY-RDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTWQFI 224

Query: 193  DRYRESQ-------------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            +     Q              V+LA    +PLV  N++ +  E  ++ H  +  ++  + 
Sbjct: 225  NPVSPEQQALNAKMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMSTGSW 284

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIF-------SDLPEALENTVEIARRCSFILQVHAPIL 292
               +   R     ++ N  E+           S + EA+ N+  IA +C+  +      +
Sbjct: 285  KKDQHEERGHAADWMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKLLAM 344

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            PR    + +D                +E    +  + KG     YRQRL++E  +I    
Sbjct: 345  PRLHATDAEDAAAFRR---------AIEEGFKRFVVDKGLPEDVYRQRLEYEAKLIIDKN 395

Query: 353  FSGYFLIVADFIQWAKKNNIP-------------VGPGRGSGAGSVTAYALTITDIDPLR 399
             +GYF +VAD++  A+                   GPGRGS  GS+  Y + IT IDP++
Sbjct: 396  MAGYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIK 455

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            + L+FERF+NPDR   PD D+DF + ++  V +Y+  +YG   V  I T    + +  L+
Sbjct: 456  YDLMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQ 515

Query: 460  DVGRALQMPYSQVDRLCKLI---------------PNDPAHPV---SLQAIADDSRFREA 501
            D+ RA  +P+ ++ ++  L+               P D   P     LQ I  +      
Sbjct: 516  DLCRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPEDEDPPTWGEVLQEIGGELAPYAK 575

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL-SQLVPMYRDVRSDLPVTQFNM 560
            +  D     L  + +++  + R    H AG+++   P+   L+P  R   +D+  TQF+M
Sbjct: 576  KYPD-----LFNLMEQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDM 630

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF---------------- 603
              +E+ G +K D L  K L +L  + D + +R GV +D     F                
Sbjct: 631  YELEELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVIALNEER 690

Query: 604  --DDHETYHLLTTKGTLGIFQLES-SGMRQALEGMQPDCIEDIIALVSLYRPGPI---DN 657
              +D   Y  +    T G+FQ+ + +G + A+   +P  + D+  L S+ RPG       
Sbjct: 691  YLNDPAIYDQIDRGQTAGLFQVNTPAGTKLAMR-FKPRSVVDMADLASINRPGVTRVPGL 749

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLK-----ETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +  Y  R++G+E++   HPL++ +        T G+++YQEQ+++ A+ L+G++  EA+ 
Sbjct: 750  LDKYIERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAER 809

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKN------GISKTIAVNIFELLAKFADYGFNKSHA 766
            LR+ +GKK  E +++ + +F+ G   N      G ++ +A  I++ L     Y FNKSH 
Sbjct: 810  LRKGIGKKKMEIINELEPKFLDGCMANSEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHG 869

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
              YA+   Q AW+K +Y  EF+   + +  D   K  +F ++ RQ    ++PP VN    
Sbjct: 870  VGYALQPCQEAWVKHYYFDEFITGCLVIHTD---KTIRFLRECRQRKRAVLPPDVNQSGA 926

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD-SKKLNRRVLESL 885
             F + D  I + L  I G+G      I+   A++PF  L+DF +R   S    + V+++L
Sbjct: 927  GFTLTDEGIRFGLTDISGIGDAAMPDIL---ANRPFKDLDDFLARASKSGGAKKGVVDAL 983

Query: 886  VFAGALDCFGYSRMQLLQSL 905
            +  GA D  G  R  +L+ +
Sbjct: 984  IKVGAFDFTGEHRQVMLEKV 1003


>gi|28898810|ref|NP_798415.1| putative DNA polymerase III alpha chain [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153838840|ref|ZP_01991507.1| DNA polymerase III, alpha subunit, putative [Vibrio
           parahaemolyticus AQ3810]
 gi|260365606|ref|ZP_05778133.1| DNA polymerase III, alpha subunit family protein [Vibrio
           parahaemolyticus K5030]
 gi|260879151|ref|ZP_05891506.1| error-prone DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|260898463|ref|ZP_05906959.1| error-prone DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|260899599|ref|ZP_05907994.1| DNA polymerase III, alpha subunit family protein [Vibrio
           parahaemolyticus AQ4037]
 gi|71151841|sp|Q87N39|DNAE2_VIBPA RecName: Full=Error-prone DNA polymerase
 gi|28807029|dbj|BAC60299.1| putative DNA polymerase III alpha chain [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149747724|gb|EDM58624.1| DNA polymerase III, alpha subunit, putative [Vibrio
           parahaemolyticus AQ3810]
 gi|308089025|gb|EFO38720.1| error-prone DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|308093560|gb|EFO43255.1| error-prone DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|308106899|gb|EFO44439.1| DNA polymerase III, alpha subunit family protein [Vibrio
           parahaemolyticus AQ4037]
 gi|308114675|gb|EFO52215.1| DNA polymerase III, alpha subunit family protein [Vibrio
           parahaemolyticus K5030]
          Length = 1024

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 226/746 (30%), Positives = 363/746 (48%), Gaps = 62/746 (8%)

Query: 180 DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
           +RL+V +QRH G D     +   +LA+  + P+ A    L  + E      +L A+ H  
Sbjct: 144 NRLWVAIQRHLGGDDDAYTNHCEKLAHELQQPITACGGVLMHTAERLPLQHILTAIKHGC 203

Query: 239 VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            V Q    R++  +  L+  +++V I+   PE LE +  IA  C F L            
Sbjct: 204 SVDQLGFERLSNAERALRPLNKLVRIYK--PEWLEESKYIADLCEFKL------------ 249

Query: 298 KECDDIQKEEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               D++ E   EL           R     G E R  +G        +D  Q ++ EL 
Sbjct: 250 ---SDLKYEYPTELIPNGYTPNSYLRMLVEQGKERRFPEGV------PEDINQTIENELR 300

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
           +I  +K+  YFL + D + +AK+  I +  GRGS A SV  Y L IT +DP + S+LFER
Sbjct: 301 LIEDLKYHYYFLTIHDIVMFAKQQGI-LYQGRGSAANSVVCYCLEITAVDPRQISVLFER 359

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           F++ +R   PD D+DF  +RR+EVI+Y+  KYG ER A   T  S + K+A+R+VG+AL 
Sbjct: 360 FISKERKEPPDIDVDFEHERREEVIQYIYKKYGRERAALAATVISYRFKSAVREVGKALG 419

Query: 467 MPYSQVDRLCKLIP-NDPAHPVSLQAIADDSRFREARLADPSV--DRLLEISQKLEGLYR 523
           +  +Q+D   K +   D +     Q I       E  L   S+   + +++  ++ G  R
Sbjct: 420 IEETQLDFFIKNVNRRDRSQGWQAQII-------ELGLQPESLKGQQFIQLVNEIIGFPR 472

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
           H S H  G VI   PL +LVP+      D  + Q++   +E   L+K D L L  L  ++
Sbjct: 473 HLSQHVGGFVISSGPLYELVPVENAAMEDRTIIQWDKDDLESLELLKVDVLALGMLNAIR 532

Query: 584 KSLDFLA---QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           K    +    QR + +       DD   Y +L    T+G+FQ+ES      L  ++P C 
Sbjct: 533 KCFQLIEKHHQRSLSIAEITRRQDDPHVYRMLQKADTVGVFQIESRAQMSMLPRLKPACY 592

Query: 641 EDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            D++  +++ RPGPI   +V+    R+NG+E +      +  +L+ T GV I+QEQV+++
Sbjct: 593 YDLVIQIAIVRPGPIQGDMVHPFLKRRNGEEPVSYPSEAVKSVLERTMGVPIFQEQVIKL 652

Query: 699 AQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
           A + +G+S  EAD LRRAM   K   ++ K K + ++G  + G     A  IFE +  F 
Sbjct: 653 AMVAAGFSGGEADQLRRAMASWKKNGDLAKFKPKLLNGMQERGYDLAFAERIFEQICGFG 712

Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
           +YGF +SH+A++AV++Y +AW+K +YP EF  A +  +        +  QDAR+  ++++
Sbjct: 713 EYGFPESHSASFAVLAYCSAWLKYYYPAEFYTALLNSQPMGFYSPSQLVQDARRHGVEVL 772

Query: 818 PPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
           P  VN       +     G   +      +KG     A  ++E      + S+++    V
Sbjct: 773 PICVNHSYYQHHLIQRPNGRLGVQLGFRLVKGFNEEGATRLVERRPKTGYHSIQE----V 828

Query: 873 DSKKLNRRVLESLVFAGALDCFGYSR 898
                +RR +E L  A A      +R
Sbjct: 829 KQILRSRRDIELLASANAFQILSGNR 854


>gi|29566684|ref|NP_818250.1| gp199 [Mycobacterium phage Bxz1]
 gi|29425409|gb|AAN16833.1| gp199 [Mycobacterium phage Bxz1]
          Length = 1131

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 253/980 (25%), Positives = 441/980 (45%), Gaps = 113/980 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-AAGIQPIIG 72
           L  H   S+L+G      +  +       ++AITD +++     F QKAC AAG++P++G
Sbjct: 8   LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRF-QKACQAAGVKPVLG 66

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            +    +  N+  + + KT       IVLL     G + L  L S  Y  +Q  +  ++ 
Sbjct: 67  AEQRWML--NIADSRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKPQLD 124

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              L +   +GL    G            +   +A +       +FGD  Y  L   +  
Sbjct: 125 PGLLMQY-RDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTWQFI 183

Query: 193 D---------RYRESQV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           +           R S++    V+LA    +PLV  N++ +  E  ++ H  +  ++  + 
Sbjct: 184 NPVSPEQQALNARMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMSTGSW 243

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIF-------SDLPEALENTVEIARRCSFILQVHAPIL 292
              +   R     ++ N  E+           S + EA+ N+  IA +C+  +      +
Sbjct: 244 KKDQHEERGHAADWMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKLLAM 303

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           PR    + +D                +E    +  + KG     YRQRL++E  +I    
Sbjct: 304 PRLHATDAEDAAAFRR---------AIEEGFKRFVVDKGLPEDVYRQRLEYEAKLIIDKN 354

Query: 353 FSGYFLIVADFIQWAKKNNIP-------------VGPGRGSGAGSVTAYALTITDIDPLR 399
            +GYF +VAD++  A+                   GPGRGS  GS+  Y + IT IDP++
Sbjct: 355 MAGYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIK 414

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
           + L+FERF+NPDR   PD D+DF + ++  V +Y+  +YG   V  I T    + +  L+
Sbjct: 415 YDLMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQ 474

Query: 460 DVGRALQMPYSQVDRLCKLI---------------PNDPAHPV---SLQAIADDSRFREA 501
           D+ RA  +P+ ++ ++  L+               P D   P     LQ I  +      
Sbjct: 475 DLCRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPEDEDPPTWGEVLQEIGGELAPYAK 534

Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL-SQLVPMYRDVRSDLPVTQFNM 560
           +  D     L  + +++  + R    H AG+++   P+   L+P  R   +D+  TQF+M
Sbjct: 535 KYPD-----LFNLMEQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDM 589

Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF---------------- 603
             +E+ G +K D L  K L +L  + D + +R GV +D     F                
Sbjct: 590 YELEELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVITLNEER 649

Query: 604 --DDHETYHLLTTKGTLGIFQLES-SGMRQALEGMQPDCIEDIIALVSLYRPGPI---DN 657
             +D   Y  +    T G+FQ+ + +G + A+   +P  + D+  L S+ RPG       
Sbjct: 650 YLNDPAIYDQIDRGQTAGLFQVNTPAGTKLAMR-FRPRSVVDMADLASINRPGVTRVPGL 708

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLK-----ETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           +  Y  R++G+E++   HPL++ +        T G+++YQEQ+++ A+ L+G++  EA+ 
Sbjct: 709 LDKYIERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAER 768

Query: 713 LRRAMGKKIKEEMDKQKERFISGASKN------GISKTIAVNIFELLAKFADYGFNKSHA 766
           LR+ +GKK  E +++ + +F+ G   N      G ++ +A  I++ L     Y FNKSH 
Sbjct: 769 LRKGIGKKKMEIINELEPKFLDGCMANPEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHG 828

Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
             YA+   Q AW+K +Y  EF+   + +  D   K  +F ++ RQ    ++PP VN    
Sbjct: 829 VGYALQPCQEAWVKHYYFDEFITGCLVIHTD---KTIRFLRECRQRKRAVLPPDVNQSGA 885

Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD-SKKLNRRVLESL 885
            F + D  I + L  I G+G      I+   A++PF  L+DF +R   S    + V+++L
Sbjct: 886 GFTLTDEGIRFGLTDISGIGDAAMPDIL---ANRPFKDLDDFLARASKSGGAKKGVVDAL 942

Query: 886 VFAGALDCFGYSRMQLLQSL 905
           +  GA D  G  R  +L+ +
Sbjct: 943 IKVGAFDFTGEHRQVMLEKV 962


>gi|203459045|ref|YP_002224201.1| gp202 [Mycobacterium phage ScottMcG]
 gi|203460690|ref|YP_002224424.1| gp203 [Mycobacterium phage Spud]
 gi|197312271|gb|ACH62627.1| gp203 [Mycobacterium phage Spud]
 gi|197312492|gb|ACH62847.1| gp202 [Mycobacterium phage ScottMcG]
          Length = 1131

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 252/980 (25%), Positives = 438/980 (44%), Gaps = 113/980 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-AAGIQPIIG 72
           L  H   S+L+G      +  +       ++AITD +++     F QKAC AAG++P++G
Sbjct: 8   LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRF-QKACQAAGVKPVLG 66

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            +    +  N+  + + KT       IVLL     G + L  L S  Y  +Q  +  ++ 
Sbjct: 67  AEQRWML--NIADSRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKPQLD 124

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              L +   +GL    G            +   +A +       +FGD  Y  L   +  
Sbjct: 125 PGLLMQY-RDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTWQFI 183

Query: 193 DRYRESQ-------------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           +     Q              V+LA    +PLV  N++ +  E  ++ H  +  ++  + 
Sbjct: 184 NPVSPEQQALNAKMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMSTGSW 243

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIF-------SDLPEALENTVEIARRCSFILQVHAPIL 292
              +   R     ++ N  E+           S + EA+ N+  IA +C+  +      +
Sbjct: 244 KKDQHEERGHAADWMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKLLAM 303

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           PR    + +D                +E    +  + KG     YRQRL++E  +I    
Sbjct: 304 PRLHATDAEDAAAFRR---------AIEEGFKRFVVDKGLPEDVYRQRLEYEAKLIIDKN 354

Query: 353 FSGYFLIVADFIQWAKKNNIP-------------VGPGRGSGAGSVTAYALTITDIDPLR 399
            +GYF +VAD++  A+                   GPGRGS  GS+  Y + IT IDP++
Sbjct: 355 MAGYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIK 414

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
           + L+FERF+NPDR   PD D+DF + ++  V +Y+  +YG   V  I T    + +  L+
Sbjct: 415 YDLMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQ 474

Query: 460 DVGRALQMPYSQVDRLCKLI---------------PNDPAHPVS---LQAIADDSRFREA 501
           D+ RA  +P+ ++ ++  L+               P D   P     LQ I  +      
Sbjct: 475 DLCRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPEDEDPPTWGEVLQEIGGELAPYAK 534

Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL-SQLVPMYRDVRSDLPVTQFNM 560
           +  D     L  + +++  + R    H AG+++   P+   L+P  R   +D+  TQF+M
Sbjct: 535 KYPD-----LFNLMEQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDM 589

Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF---------------- 603
             +E+ G +K D L  K L +L  + D + +R GV +D     F                
Sbjct: 590 YELEELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVIALNEER 649

Query: 604 --DDHETYHLLTTKGTLGIFQLES-SGMRQALEGMQPDCIEDIIALVSLYRPGPI---DN 657
             +D   Y  +    T G+FQ+ + +G + A+   +P  + D+  L S+ RPG       
Sbjct: 650 YLNDPAIYDQIDRGQTAGLFQVNTPAGTKLAMR-FKPRSVVDMADLASINRPGVTRVPGL 708

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLK-----ETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           +  Y  R++G+E++   HPL++ +        T G+++YQEQ+++ A+ L+G++  EA+ 
Sbjct: 709 LDKYIERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAER 768

Query: 713 LRRAMGKKIKEEMDKQKERFISGASKN------GISKTIAVNIFELLAKFADYGFNKSHA 766
           LR+ +GKK  E +++ + +F+ G   N      G ++ +A  I++ L     Y FNKSH 
Sbjct: 769 LRKGIGKKKMEIINELEPKFLDGCMANSEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHG 828

Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
             YA+   Q AW+K +Y  EF+   + +  D   K  +F ++ RQ    ++PP VN    
Sbjct: 829 VGYALQPCQEAWVKHYYFDEFITGCLVIHTD---KTIRFLRECRQRKRAVLPPDVNQSGA 885

Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD-SKKLNRRVLESL 885
            F + D  I + L  I G+G      I+   A++PF  L+DF +R   S    + V+++L
Sbjct: 886 GFTLTDEGIRFGLTDISGIGDAAMPDIL---ANRPFKDLDDFLARASKSGGAKKGVVDAL 942

Query: 886 VFAGALDCFGYSRMQLLQSL 905
           +  GA D  G  R  +L+ +
Sbjct: 943 IKVGAFDFTGEHRQVMLEKV 962


>gi|203457520|ref|YP_002224866.1| gp201 [Mycobacterium phage Rizal]
 gi|197312048|gb|ACH62405.1| gp201 [Mycobacterium phage Rizal]
          Length = 1162

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 252/980 (25%), Positives = 438/980 (44%), Gaps = 113/980 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-AAGIQPIIG 72
           L  H   S+L+G      +  +       ++AITD +++     F QKAC AAG++P++G
Sbjct: 39  LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRF-QKACQAAGVKPVLG 97

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            +    +  N+  + + KT       IVLL     G + L  L S  Y  +Q  +  ++ 
Sbjct: 98  AEQRWML--NIADSRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKPQLD 155

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              L +   +GL    G            +   +A +       +FGD  Y  L   +  
Sbjct: 156 PGLLMQY-RDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTWQFI 214

Query: 193 DRYRESQ-------------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           +     Q              V+LA    +PLV  N++ +  E  ++ H  +  ++  + 
Sbjct: 215 NPVSPEQQALNAKMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMSTGSW 274

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIF-------SDLPEALENTVEIARRCSFILQVHAPIL 292
              +   R     ++ N  E+           S + EA+ N+  IA +C+  +      +
Sbjct: 275 KKDQHEERGHAADWMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKLLAM 334

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           PR    + +D                +E    +  + KG     YRQRL++E  +I    
Sbjct: 335 PRLHATDAEDAAAFRR---------AIEEGFKRFVVDKGLPEDVYRQRLEYEAKLIIDKN 385

Query: 353 FSGYFLIVADFIQWAKKNNIP-------------VGPGRGSGAGSVTAYALTITDIDPLR 399
            +GYF +VAD++  A+                   GPGRGS  GS+  Y + IT IDP++
Sbjct: 386 MAGYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIK 445

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
           + L+FERF+NPDR   PD D+DF + ++  V +Y+  +YG   V  I T    + +  L+
Sbjct: 446 YDLMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQ 505

Query: 460 DVGRALQMPYSQVDRLCKLI---------------PNDPAHPV---SLQAIADDSRFREA 501
           D+ RA  +P+ ++ ++  L+               P D   P     LQ I  +      
Sbjct: 506 DLCRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPEDEDPPTWGEVLQEIGGELAPYAK 565

Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL-SQLVPMYRDVRSDLPVTQFNM 560
           +  D     L  + +++  + R    H AG+++   P+   L+P  R   +D+  TQF+M
Sbjct: 566 KYPD-----LFNLMEQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDM 620

Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF---------------- 603
             +E+ G +K D L  K L +L  + D + +R GV +D     F                
Sbjct: 621 YELEELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVITLNEER 680

Query: 604 --DDHETYHLLTTKGTLGIFQLES-SGMRQALEGMQPDCIEDIIALVSLYRPGPI---DN 657
             +D   Y  +    T G+FQ+ + +G + A+   +P  + D+  L S+ RPG       
Sbjct: 681 YLNDPAIYDQIDRGQTAGLFQVNTPAGTKLAMR-FKPRSVVDMADLASINRPGVTRVPGL 739

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLK-----ETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           +  Y  R++G+E++   HPL++ +        T G+++YQEQ+++ A+ L+G++  EA+ 
Sbjct: 740 LDKYIERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAER 799

Query: 713 LRRAMGKKIKEEMDKQKERFISGASKN------GISKTIAVNIFELLAKFADYGFNKSHA 766
           LR+ +GKK  E +++ + +F+ G   N      G ++ +A  I++ L     Y FNKSH 
Sbjct: 800 LRKGIGKKKMEIINELEPKFLDGCMANPEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHG 859

Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
             YA+   Q AW+K +Y  EF+   + +  D   K  +F ++ RQ    ++PP VN    
Sbjct: 860 VGYALQPCQEAWVKHYYFDEFITGCLVIHTD---KTIRFLRECRQRKRAVLPPDVNQSGA 916

Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD-SKKLNRRVLESL 885
            F + D  I + L  I G+G      I+   A++PF  L+DF +R   S    + V+++L
Sbjct: 917 GFTLTDEGIRFGLTDISGIGDAAMPDIL---ANRPFKDLDDFLARASKSGGAKKGVVDAL 973

Query: 886 VFAGALDCFGYSRMQLLQSL 905
           +  GA D  G  R  +L+ +
Sbjct: 974 IKVGAFDFTGEHRQVMLEKV 993


>gi|134297021|ref|YP_001120756.1| error-prone DNA polymerase [Burkholderia vietnamiensis G4]
 gi|134140178|gb|ABO55921.1| DNA polymerase III, alpha subunit [Burkholderia vietnamiensis G4]
          Length = 1071

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 283/1066 (26%), Positives = 463/1066 (43%), Gaps = 138/1066 (12%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     ++ + A      +AITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASHAEELVARAAELGYRGLAITDECSLAGAPRMHVAAQAQGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   +       G  P P    +VLL    EGY  L EL+S           
Sbjct: 69   LVVGAYFAVTPDE----VAPGHDPGPGAFGLVLLAQNREGYGNLAELIS----------- 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAF----------------FFNSSQVAEKRLL 172
                  W +    +G   LT         AF                +   + V + ++ 
Sbjct: 114  ------WRRMAAPKGTYTLTSRMLSAPPAAFAHLRGMPDCFAILVPVYPVRADVLDAQVA 167

Query: 173  TFKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             F+  FG+R  + L Q  R  D  +  ++        +P+VA  +            DV+
Sbjct: 168  WFRATFGERARLGLVQLQRALDGAQREEIRAAGERRGVPVVALGDVTMHRRSCKPLQDVM 227

Query: 232  MAVAHSTVVSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ--- 286
             A+     V++     + P  + +L++R  +  ++S  P+ +  T EI   C F L    
Sbjct: 228  TAIRVGMPVAECGYA-LAPNAEQHLRSRQRIGQLYS--PDEIAQTCEILDACDFELGSLR 284

Query: 287  -------VHAPILP-RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                   V A + P R++E+E                +AG   R  +G   K        
Sbjct: 285  YEYPDEIVPAGLTPTRYLEQET---------------LAGARARYPRGVPEK------VA 323

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            + +  EL++IA++ +  +FL V D +++A+  NI +  GRGS A SV  Y L IT++DP 
Sbjct: 324  KLIRHELDLIAKLSYEPFFLTVYDIVKFARSRNI-LCQGRGSAANSVVCYCLGITEVDPD 382

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
            + ++LFERF++  R   PD D+DF   RR+EVI+++  KYG +R A      + + +  L
Sbjct: 383  QSTMLFERFISEKRGEPPDIDVDFEHQRREEVIQHIYRKYGKDRAAIAAAVSTYRPRGVL 442

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR-----FREARL--ADPSVDRL 511
            R+ G+AL +    VDR+ K      AH        D SR     F    L  A P +   
Sbjct: 443  RETGKALGVDPMLVDRVAK------AH-----RWFDGSRDLLKQFASTGLDPATPLIATW 491

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
              ++ +L    RH S H+ G VI    L++LVP+         V Q++   +E  GL+K 
Sbjct: 492  ATLAARLLNFPRHLSQHSGGFVISRGKLTRLVPVENAAMDGRRVIQWDKDDLEALGLMKV 551

Query: 572  DFLGLKTLTLLQKSLDF-LAQRGVKVD-----LSLIPFDDHETYHLLTTKGTLGIFQLES 625
            D L L  L+ L ++ D   A RG + D     +  +P DD  TY ++    T+G+FQ+ES
Sbjct: 552  DVLALGMLSALHRAFDLRTAWRGPQPDGEPFTMKHVPQDDEATYDMICRADTVGVFQIES 611

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK-----NGKEKIVSIHP--LI 678
                  L  ++P    D++  VS+ RPGPI    V+   K     +G+E+    +P   +
Sbjct: 612  RAQMSMLPRLKPRNYYDLVVQVSIVRPGPIQGGAVHPYLKRRRIMSGEEQGKVTYPSDAL 671

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGAS 737
              +L+ T GV I+QEQVMQIA + +G++  EAD LRRAM   K K  ++K  ++ + G  
Sbjct: 672  KEVLERTLGVPIFQEQVMQIAIVAAGFTPGEADELRRAMAAWKRKGNLEKYHDKIVEGML 731

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
                ++  A  IFE +  F +YGF +SHAA++A ++Y ++W+K H P  F+AA +  +  
Sbjct: 732  ARNYTREFAEQIFEQIKGFGEYGFPESHAASFAKLAYASSWLKCHEPAIFVAALLNSQPM 791

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----------GDNRIYYSLAAIKGVGT 847
                  +  QDA++  +Q++P  V     +  +          G   +   LA ++G+G 
Sbjct: 792  GFYAPAQLVQDAKRHGVQVLPADVTQSGWETSLEALPGQPPPHGQPAVRLGLALVRGLGE 851

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRR-VLESLVFAGALDCFGYSRMQLLQSLD 906
              AR I  A A  PFDS++    R    +L RR +             G+ R  L Q++ 
Sbjct: 852  AAARRIEAARAAGPFDSVDALARRA---QLERRDLEALAAANALAALAGHRRDALWQAVA 908

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                              ++ A       D+         + +     +   +G   + H
Sbjct: 909  -------------AAPERDLLA---AAPIDETEQPALGAPSEADDILADYHTIGLTLNRH 952

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            P+ + +P LR   +    E      G   R   +V+++Q   T KG
Sbjct: 953  PVALLRPALRAQRLSSAAELRDRPDGRLARACGLVIARQMPGTAKG 998


>gi|260767892|ref|ZP_05876826.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
 gi|260615922|gb|EEX41107.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
          Length = 1023

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 228/752 (30%), Positives = 373/752 (49%), Gaps = 43/752 (5%)

Query: 181 RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           RL++ +QRH G  D         LA   +LP+ A    L  +        +L A+     
Sbjct: 145 RLWLGVQRHLGPQDNAYLDHCRTLAQAFDLPITACGGVLMHNATRLPLQHILTAIQRGQP 204

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           V       V+  +  L++++++  +F   PE L+ +V IA RC F L     +  R+  +
Sbjct: 205 VEHIQAHLVSNTERALRSQAKLSKLFP--PEWLQESVRIAERCEFQL---GSLHYRYPSE 259

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D        LR     G  +R   G  A      D    ++ EL +I  +    YFL
Sbjct: 260 LVPD-DHTPMAYLRQLVEQGKALRFPHGVPA------DINATIEKELTLIDELDLPYYFL 312

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            + D + +AK++ I +  GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD 
Sbjct: 313 TIHDIVMFAKRSGI-LYQGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERQEPPDI 371

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DF  +RR+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  +Q+D   K 
Sbjct: 372 DVDFEHERREEVIQYLYRKYGRERAALAATVISYRFKSAVRDVGKALGIHEAQLDFFIKN 431

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSV--DRLLEISQKLEGLYRHASTHAAGIVIGD 536
           + N     +  QA     +  E  L   S+   + +E+  +L G  RH S H  G VI  
Sbjct: 432 V-NRRDRGLGWQA-----QLTELGLEPQSLKGQQFIELVNELIGFPRHLSQHVGGFVISS 485

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
            PL +LVP+      +  + Q++   +E  GL K D L L  LT ++K    + Q   + 
Sbjct: 486 GPLYELVPVENAAMPERTIIQWDKDDLESLGLFKVDVLALGMLTAIRKCFTCIEQHHQRK 545

Query: 596 ---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               D++ +  DD   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RP
Sbjct: 546 LSIADITRLQ-DDANVYGMIQRADTIGVFQIESRAQMSMLPRLKPRCYYDLVIQIAIVRP 604

Query: 653 GPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           GPI   +V+    R++G E +      ++ +L+ T GV I+QEQV++IA + +G+S  EA
Sbjct: 605 GPIQGDMVHPFLKRRDGIEDVTYPSKEVEAVLQRTMGVPIFQEQVIKIAMVAAGFSGGEA 664

Query: 711 DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
           D LRRAM   K   E+ K + + I+G    G     A  I++ +  F +YGF +SH+A++
Sbjct: 665 DQLRRAMASWKKTGELAKFRTKLINGMLARGYELAFAERIYDQICGFGEYGFPESHSASF 724

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
           AV++Y +AW+K +YP  F  A +           +  QDA++  I+++P  VN    D +
Sbjct: 725 AVLAYCSAWLKYYYPEAFYTALLNSLPMGFYSASQLVQDAQRHGIKVLPVCVNASQWDHQ 784

Query: 830 VGDNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           V ++     +   L  +KG     AR ++ A   + F       +++    L ++ +ESL
Sbjct: 785 VVEHEQQQAMRLGLRQVKGFSEQGARLLLNARPAQGFHH----PAQLKRCGLTQKDMESL 840

Query: 886 VFAGALDCFGY----SRMQLLQSLDNIQKYAQ 913
             A AL  F +    +R  ++ SL ++  + Q
Sbjct: 841 ASANALHSFAHNRYATRWSMMDSLSDLPLFEQ 872


>gi|109393383|ref|YP_656181.1| gp201 [Mycobacterium phage Catera]
 gi|91981205|gb|ABE67920.1| gp201 [Mycobacterium phage Catera]
          Length = 1131

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 252/980 (25%), Positives = 438/980 (44%), Gaps = 113/980 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-AAGIQPIIG 72
           L  H   S+L+G      +  +       ++AITD +++     F QKAC AAG++P++G
Sbjct: 8   LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRF-QKACQAAGVKPVLG 66

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            +    +  N+  + + KT       IVLL     G + L  L S  Y  +Q  +  ++ 
Sbjct: 67  AEQRWML--NIADSRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKPQLD 124

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              L +   +GL    G            +   +A +       +FGD  Y  L   +  
Sbjct: 125 PGLLMQY-RDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTWQFI 183

Query: 193 DRYRESQ-------------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           +     Q              V+LA    +PLV  N++ +  E  ++ H  +  ++  + 
Sbjct: 184 NPVSPEQQALNAKMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMSTGSW 243

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIF-------SDLPEALENTVEIARRCSFILQVHAPIL 292
              +   R     ++ N  E+           S + EA+ N+  IA +C+  +      +
Sbjct: 244 KKDQHEERGHAADWMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKLLAM 303

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           PR    + +D                +E    +  + KG     YRQRL++E  +I    
Sbjct: 304 PRLHATDAEDAAAFRR---------AIEEGFKRFVVDKGLPEDVYRQRLEYEAKLIIDKN 354

Query: 353 FSGYFLIVADFIQWAKKNNIP-------------VGPGRGSGAGSVTAYALTITDIDPLR 399
            +GYF +VAD++  A+                   GPGRGS  GS+  Y + IT IDP++
Sbjct: 355 MAGYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIK 414

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
           + L+FERF+NPDR   PD D+DF + ++  V +Y+  +YG   V  I T    + +  L+
Sbjct: 415 YDLMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQ 474

Query: 460 DVGRALQMPYSQVDRLCKLI---------------PNDPAHPV---SLQAIADDSRFREA 501
           D+ RA  +P+ ++ ++  L+               P D   P     LQ I  +      
Sbjct: 475 DLCRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPEDEDPPTWGEVLQEIGGELAPYAK 534

Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL-SQLVPMYRDVRSDLPVTQFNM 560
           +  D     L  + +++  + R    H AG+++   P+   L+P  R   +D+  TQF+M
Sbjct: 535 KYPD-----LFNLMEQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDM 589

Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF---------------- 603
             +E+ G +K D L  K L +L  + D + +R GV +D     F                
Sbjct: 590 YELEELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVITLNEER 649

Query: 604 --DDHETYHLLTTKGTLGIFQLES-SGMRQALEGMQPDCIEDIIALVSLYRPGPI---DN 657
             +D   Y  +    T G+FQ+ + +G + A+   +P  + D+  L S+ RPG       
Sbjct: 650 YLNDPAIYDQIDRGQTAGLFQVNTPAGTKLAMR-FKPRSVVDMADLASINRPGVTRVPGL 708

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLK-----ETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           +  Y  R++G+E++   HPL++ +        T G+++YQEQ+++ A+ L+G++  EA+ 
Sbjct: 709 LDKYIERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAER 768

Query: 713 LRRAMGKKIKEEMDKQKERFISGASKN------GISKTIAVNIFELLAKFADYGFNKSHA 766
           LR+ +GKK  E +++ + +F+ G   N      G ++ +A  I++ L     Y FNKSH 
Sbjct: 769 LRKGIGKKKMEIINELEPKFLDGCMANPEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHG 828

Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
             YA+   Q AW+K +Y  EF+   + +  D   K  +F ++ RQ    ++PP VN    
Sbjct: 829 VGYALQPCQEAWVKHYYFDEFITGCLVIHTD---KTIRFLRECRQRKRAVLPPDVNQSGA 885

Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD-SKKLNRRVLESL 885
            F + D  I + L  I G+G      I+   A++PF  L+DF +R   S    + V+++L
Sbjct: 886 GFTLTDEGIRFGLTDISGIGDAAMPDIL---ANRPFKDLDDFLARASKSGGAKKGVVDAL 942

Query: 886 VFAGALDCFGYSRMQLLQSL 905
           +  GA D  G  R  +L+ +
Sbjct: 943 IKVGAFDFTGEHRQVMLEKV 962


>gi|119961680|ref|YP_948048.1| DNA polymerase III, alpha subunit [Arthrobacter aurescens TC1]
 gi|119948539|gb|ABM07450.1| putative DNA polymerase III, alpha subunit [Arthrobacter aurescens
            TC1]
          Length = 1172

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 284/1132 (25%), Positives = 495/1132 (43%), Gaps = 153/1132 (13%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL V +++S   G    + +    AA+   A+A TD + L+  ++  +    A I P
Sbjct: 2    SFTHLHVSTAFSAHYGVSWPDELAQTAAANGATALACTDRDGLYGTIKHLKACMDASIDP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV---STAEGYQRLIELVSRMYLLDQGK 126
            I+G  L +   D    T  G         +V+L    +   GY+ L  L+S  +    GK
Sbjct: 62   IVGVDLAVFDDDGDHRTQVGG-------RVVVLAHGNNNGAGYRALCRLISDAHARTSGK 114

Query: 127  QSVRICLSWLQ-EIGTEGL---------IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
                +  +  + E+ +  L          +L G  S   D        +    R L FK+
Sbjct: 115  AGGAVPAAVTRGELASRTLDPKTLKPVLTVLIGPDS---DVGLAMGGRKYLRPRTL-FKQ 170

Query: 177  LFG----DRLYVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                     +   +  H              ++++LA  + +P + +N   + +++    
Sbjct: 171  WIDAMPPGTMVAEVVSHLSAPGEPLSTAHAVRMLKLALEYNIPAILSNAVRYCAQDGAAT 230

Query: 228  HDVL-MAVAHSTVVSQKDRPRVTP--------DHYLKNRSEMVSIF-----------SDL 267
             DVL  A    ++      P + P          +LK   +M+ +            +DL
Sbjct: 231  ADVLDSARTLKSLPELSTAPPLQPTGMLQPTGQGWLKTPQQMLQLGKEIMNAAGQGKADL 290

Query: 268  PEALENTVEIARRCSF--ILQV--HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
             + L NT  +A +C    +L +    P++P   E     I  +   EL  +  AG+  R 
Sbjct: 291  TKLLANTEALADKCRINPVLDMGWKKPVVP---EASIIGIDADPMLELTQRCEAGITRRF 347

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                   G   +  R RL+ EL +I R+ F+ YFL VA+  +      + V   RGSGA 
Sbjct: 348  PG---INGDAEKHLRSRLEHELGIIGRLGFASYFLTVAEVSRMILDMGVRVA-ARGSGAS 403

Query: 384  SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            S+  Y + I+ +DP+R  L+FERFL+  R ++PD DID     R  V R + +++G ERV
Sbjct: 404  SLVNYLIDISQVDPIRHDLIFERFLSGRRSTLPDIDIDVESAERHNVYRKIFDRFGAERV 463

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
              +      +A+ A+RD G AL MP  +V  + K +    A            +FREA +
Sbjct: 464  TLMSMQNGYRARGAVRDAGMALGMPDDEVGEIAKQLWRFSAR-----------KFREALV 512

Query: 504  ADPSV------------------DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              P +                  D L++++++L+ L RH S H  G+++GD  L    P+
Sbjct: 513  EKPELRDFAGRVERGALEENQQLDLLVDLTERLDRLPRHISMHPCGVILGDATLLDRTPV 572

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL------------------- 586
             +     LP++QF+   ++  G++K D LG++  + +  ++                   
Sbjct: 573  -QPSGLGLPMSQFDKHDMDPMGMLKLDVLGVRMQSAMAFAVREVIRLHPSKAEVVAAGRH 631

Query: 587  ---------DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
                     D++A  G ++DL+ +PFDD  TY L+ +  TLG FQ+ES G R+ +  M P
Sbjct: 632  PIEPGGDGPDYIAPDG-RIDLNAVPFDDEPTYELIRSTHTLGCFQIESPGQRELIGKMAP 690

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
                D+I  +SL+RPGP+  D +  +   ++G    +  H  + P+L+ET GV ++ EQ+
Sbjct: 691  REFNDLIIDISLFRPGPMKSDMVRPFLEHRHGFAPEIYPHQDLKPVLQETHGVTVFHEQI 750

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            ++   +++   L  AD  RRA+G +++E      E++    +    S  +   ++  L  
Sbjct: 751  LKTFHVMTDCGLDRADEFRRALGDEVQE---PGVEKYFRKEAIKKYSPEVVDKVWGTLKA 807

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            F  +GF K+H AA+AV +YQ+AW+K H+P  FLA     +     K +    +AR+  I 
Sbjct: 808  FGSFGFCKAHGAAFAVPTYQSAWLKAHHPEAFLAGLWEHDPGMYPK-RLLVAEARRLGIP 866

Query: 816  IMPPSVNTPCVDFKV-----GDNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            I+P  +N    +++V     G N     I  SL  I G+     + I+   A +P+DSL 
Sbjct: 867  ILPLDINRSQAEYRVEKIQQGTNHGKLGIRLSLTGIYGLSGAELKRIV---AGQPYDSLA 923

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCF------GYSRMQLLQSLDNIQKYAQWVEKNRT 920
            D  +R    K N + L  L   GA D          +R  L+Q L  +Q       K  T
Sbjct: 924  DLRARARVSKPNIKRLAQL---GAFDALHKDSGGKANRADLVQHLQALQSNPS---KKAT 977

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
            +  E   A   G    +    +            E  ++    S H ++ ++P+L K+G+
Sbjct: 978  DGIEGQLAFALGDVELRNLAPELPAPTMVDNVRAELDLMAVDVSEHLMESHRPLLEKLGV 1037

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               ++ ++   G  + +A + ++ Q    R G R+ +++  +     ++ FF
Sbjct: 1038 TTADKLLSLRNGTEVLVAGVRIATQTPPMRGGRRVVFISIDDGTGCVDSVFF 1089


>gi|161523657|ref|YP_001578669.1| error-prone DNA polymerase [Burkholderia multivorans ATCC 17616]
 gi|189351575|ref|YP_001947203.1| error-prone DNA polymerase [Burkholderia multivorans ATCC 17616]
 gi|160341086|gb|ABX14172.1| DNA polymerase III, alpha subunit [Burkholderia multivorans ATCC
           17616]
 gi|189335597|dbj|BAG44667.1| DNA polymerase III alpha subunit [Burkholderia multivorans ATCC
           17616]
          Length = 1071

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 259/903 (28%), Positives = 419/903 (46%), Gaps = 86/903 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  L   S++S L GA     ++ +        IAITD  +L  A      A AAG+ 
Sbjct: 9   PAYAELFCRSNFSFLHGASHAEELVARAVKLGYRGIAITDECSLAGAPRMHVAARAAGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG   ++   +       G  P P    +VLL    EGY  L EL+S    +   K +
Sbjct: 69  LIIGSYFEVTPDE----APPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMAAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            ++    L     E   +        I    +   + V + ++  F+  FG+R  + L Q
Sbjct: 124 YQLTPRMLSRPPEEFAHLRGMPDCFAILVPVYPVRADVLDAQVAWFRTTFGERARLGLVQ 183

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D  +  ++        + +VA  +            DV+ A+     VS+     
Sbjct: 184 LQRALDGPQRDEIRAAGARRGVRVVALGDVTMHKRSCKPLQDVMTAIRLGMPVSECGYA- 242

Query: 248 VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           + P  + +L++R+ + ++FS          EIA+ C+ +   H          E D ++ 
Sbjct: 243 LAPNAEQHLRSRARIATLFS--------ADEIAQTCAILDACHF---------ELDTLRY 285

Query: 306 EEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
           E  +E           L  +  AG   R  +G   K        Q++ +EL +IA++ + 
Sbjct: 286 EYPDEIVPPGHTPTSYLEQETRAGAAERYPKGVPEK------VEQQIRYELALIAKLSYE 339

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            +FL V D +++A+  NI +  GRGS A S   Y L IT++DP + +LLFERF++ +R  
Sbjct: 340 PFFLTVYDIVKYARSQNI-LCQGRGSAANSAVCYCLGITEVDPEQSTLLFERFISENRGE 398

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            PD D+DF   RR+EVI+++  KYG  R A      + + +  LR+ G+AL +    VDR
Sbjct: 399 PPDIDVDFEHQRREEVIQHIYEKYGKHRAAIAAAVSTYRPRGVLRETGKALGVDPMLVDR 458

Query: 475 LCKLIPNDPAHPVSLQAIADDSR-----FREARL--ADPSVDRLLEISQKLEGLYRHAST 527
           + K       H        D SR     F    L  A P +    E++ +L    RH S 
Sbjct: 459 VAK------GH-----RWFDGSRDLLQQFEMVGLDPATPLIRTWAELAARLLNFPRHLSQ 507

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           H+ G VI    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ D
Sbjct: 508 HSGGFVISRGKLTRLVPVENAAMDGRRVIQWDKDDLEALGLLKVDVLALGMLSALHRAFD 567

Query: 588 FL-AQRGVKVD-----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            + A RG++ D        IP  D +TY ++    T+G+FQ+ES      L  ++P    
Sbjct: 568 MITAWRGLQPDGKPFGFDHIPRHDDDTYDMICRADTVGVFQIESRAQMSMLPRLKPREYY 627

Query: 642 DIIALVSLYRPGPIDNIVVYNNRKN-----GKEKIVSIHP--LIDPMLKETQGVIIYQEQ 694
           D++  VS+ RPGPI    V+   K      G+E+    +P   +  +L+ T GV I+QEQ
Sbjct: 628 DLVIQVSIVRPGPIQGGAVHPYLKRRRIVAGEEEGEVTYPSDALKAVLERTLGVPIFQEQ 687

Query: 695 VMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
           VMQIA + +G++  EAD LRRAM   K K ++ K  ++ ++G  + G ++  A  IFE +
Sbjct: 688 VMQIAIVAAGFTPDEADALRRAMAAWKRKGDLGKYHDQIVNGMLERGYTREFAEQIFEQI 747

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             F +YGF +SHAA++A ++Y ++W+K H P  F+AA +  +        +  QDAR+  
Sbjct: 748 KGFGEYGFPESHAASFAKLAYASSWLKCHEPAIFVAALLNSQPMGFYAPAQLVQDARRHG 807

Query: 814 IQIMPPSVNT----------PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
           + + P  V            P      GD  +   L+ ++G G   AR I  A A  PF+
Sbjct: 808 VTVFPVDVTKSNWETSLEALPGAAPPEGDPAVRLGLSLVRGFGEAAARRIEAARAAGPFE 867

Query: 864 SLE 866
           +++
Sbjct: 868 NVD 870


>gi|315179595|gb|ADT86509.1| hypothetical DNA polymerase III alpha chain [Vibrio furnissii NCTC
           11218]
          Length = 1023

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 228/752 (30%), Positives = 374/752 (49%), Gaps = 43/752 (5%)

Query: 181 RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           RL++ +QRH G  D         LA   +LP+ A    L  +        +L A+     
Sbjct: 145 RLWLGVQRHLGPQDNAYLDHCRTLAQAFDLPITACGGVLMHNATRLPLQHILTAIQRGQP 204

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           V       V+  +  L++++++  +F   PE L+ +V IA RC F L     +  R+  +
Sbjct: 205 VEHIQAHLVSNTERALRSQAKLSKLFP--PEWLQESVRIAERCEFQL---GSLHYRYPSE 259

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D        LR     G  +R   G  A      D    ++ EL +I  +    YFL
Sbjct: 260 LVPD-DHTPMAYLRQLVEQGKALRFPHGVPA------DINATIEKELALIDELDLPYYFL 312

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            + D + +AK+N I +  GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD 
Sbjct: 313 TIHDIVMFAKRNGI-LYQGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERQEPPDI 371

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DF  +RR+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  +Q+D   K 
Sbjct: 372 DVDFEHERREEVIQYLYRKYGRERAALAATVISYRFKSAVRDVGKALGIHEAQLDFFIKN 431

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSV--DRLLEISQKLEGLYRHASTHAAGIVIGD 536
           + N     +  QA     +  E  L   S+   + +E+  +L G  RH S H  G VI  
Sbjct: 432 V-NRRDRGLGWQA-----QLTELGLEPQSLKGQQFIELVNELIGFPRHLSQHVGGFVISS 485

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
            PL +LVP+      +  + Q++   +E  GL K D L L  LT ++K    + Q+  + 
Sbjct: 486 GPLYELVPVENAAMPERTIIQWDKDDLESLGLFKVDVLALGMLTAIRKCFTCIEQQYQRK 545

Query: 596 ---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               D++ +  DD   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RP
Sbjct: 546 LSIADITRLQ-DDANVYGMIQRADTIGVFQIESRAQMSMLPRLKPRCYYDLVIQIAIVRP 604

Query: 653 GPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           GPI   +V+    R++G E +      ++ +L+ T GV I+QEQV++IA + +G+S  EA
Sbjct: 605 GPIQGDMVHPFLKRRDGIEDVTYPSKEVEAVLQRTMGVPIFQEQVIKIAMVAAGFSGGEA 664

Query: 711 DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
           D LRRAM   K   E+ K + + I+G    G     A  I++ +  F +YGF +SH+A++
Sbjct: 665 DQLRRAMASWKKTGELAKFRTKLINGMLARGYELAFAERIYDQICGFGEYGFPESHSASF 724

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
           AV++Y +AW+K +YP  F  A +           +  QDA++  I+++P  VN    D +
Sbjct: 725 AVLAYCSAWLKYYYPEAFYTALLNSLPMGFYSASQLVQDAQRHGIKVLPVCVNASQWDHQ 784

Query: 830 VGDNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           V ++     +   L  +KG     A+ ++ A   + F       +++    L ++ +ESL
Sbjct: 785 VVEHEQQQAMRLGLRQVKGFSEQGAQLLLNARPAQGFHH----PAQLKRCGLTQKDMESL 840

Query: 886 VFAGALDCFGY----SRMQLLQSLDNIQKYAQ 913
             A AL  F +    +R  ++ SL ++  + Q
Sbjct: 841 ASANALHSFAHNRYATRWSMMDSLSDLPLFEQ 872


>gi|330818376|ref|YP_004362081.1| DNA polymerase III, alpha subunit superfamily protein [Burkholderia
           gladioli BSR3]
 gi|327370769|gb|AEA62125.1| DNA polymerase III, alpha subunit superfamily protein [Burkholderia
           gladioli BSR3]
          Length = 1080

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 255/900 (28%), Positives = 421/900 (46%), Gaps = 68/900 (7%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACA-- 64
           P++  L   S++S L GA +   ++++  A     IAITD  +L  A  +  + KA A  
Sbjct: 8   PAYAELFCRSNFSFLHGASAAEELVERAQALGYRGIAITDECSLAGAPRMHVAAKANAEA 67

Query: 65  -------AGIQP---------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                  AG  P         +IG   ++       +   G  P P    +VLL    EG
Sbjct: 68  LLKQWEEAGSDPTSKPEPLRLVIGSYFEV----TADVVAPGGDPGPGAFGLVLLARNREG 123

Query: 109 YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
           Y  L EL+S   +  + K +  +    L    +E   +        I    +   + V +
Sbjct: 124 YGNLSELISWRRMASK-KGTYTLTPRMLAAPPSEFAHLRGVPDCFAILVPSYPVRADVLD 182

Query: 169 KRLLTFKKLFGDRLYVNL-QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            ++  FK +FG++  + L Q  R  D  YRE+ +   +    +PLVA  +    +     
Sbjct: 183 AQVAWFKHVFGEQARLGLVQLGRALDGVYRET-IEAASVQRAMPLVALGDVTMHARSCKP 241

Query: 227 AHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
             D++ A+     V +      +  + +L+    +  +F    EAL  +  +   C F +
Sbjct: 242 LQDIMTAIRVGQPVGECGYALASNAEQHLRRLGRIGRLFP--AEALAESCRVLGECRFDM 299

Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                  P  +E   D +   +   L  +   G + R A+         +  R+++ +EL
Sbjct: 300 SKLKYEYP--LEIVPDGMTPTQY--LAQETWKGAQERFAKRI------PKSVRRQIKYEL 349

Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +IA M++  +FL V D +++A+   I +  GRGS A SV  Y L +T  DP R ++LFE
Sbjct: 350 GLIAEMEYEPFFLTVYDIVKFARSKEI-LCQGRGSAANSVVCYCLRVTAADPGRTTMLFE 408

Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
           RF++ +R   PD D+DF  +RR+EVI+Y+  KY  +R A      + + + ALR+ G+AL
Sbjct: 409 RFISRERGEPPDIDVDFEHERREEVIQYIYEKYTEDRAALAAAVSTYRPRGALRETGKAL 468

Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSV---DRLLEISQKLEGL 521
            +    V+R+ K               AD  +RF    L DP V       E++ +L G 
Sbjct: 469 GVDLMLVERVAK-------EHRWFDGRADLLARFASVGL-DPEVPIIQAWAEMASRLLGF 520

Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
            RH S H+ G VI    L++LVP+         V Q++   +E  GL+K D L L  LT 
Sbjct: 521 PRHLSQHSGGFVISRDKLTRLVPIENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLTA 580

Query: 582 LQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           L+++ DF+ + RG ++ +  I   D  TY +++   T+G+FQ+ES      L  ++P   
Sbjct: 581 LRRAFDFVGEWRGKRIGIDDIREGDKATYDMISNADTVGVFQIESRAQMSMLPRLRPRKY 640

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            D++  V++ RPGPI    V  Y  R+  KE +  +   + P L+ T GV I+QEQVMQI
Sbjct: 641 YDLVIEVAIVRPGPIQGGAVHPYLKRRQNKEDVSYLKDDLKPALERTLGVPIFQEQVMQI 700

Query: 699 AQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
           A + +G++  EAD LRRAM   K K  ++K +E+ + G ++       A  IFE +  F 
Sbjct: 701 AIIAAGFTPGEADELRRAMAAWKRKGNLEKYREKIVKGMAERHYPSEFASQIFEQIKGFG 760

Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
           +YGF +SHAA++A++ Y ++W+K H P  FLA+ +  +        +  QDA++  + + 
Sbjct: 761 EYGFPESHAASFAILVYASSWLKCHEPAIFLASLLNSQPMGFYPPAQLVQDAKRHGVTVR 820

Query: 818 PPSVNTPCVD----------FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
           P  V     D             G   +   ++ + G+G   A  I  A    PF S++D
Sbjct: 821 PIDVTASNWDASLEPLPDEPPPEGRPAVRLGMSLVAGLGREAALRIEAARQQGPFASVDD 880


>gi|163783833|ref|ZP_02178814.1| branched-chain alpha-keto acid dehydrogenase E2 subunit
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880904|gb|EDP74427.1| branched-chain alpha-keto acid dehydrogenase E2 subunit
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 352

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 159/337 (47%), Positives = 227/337 (67%), Gaps = 7/337 (2%)

Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
           + +E+++I +M F  YFLIV DFI+ AK+N IPVGPGRGS AGS+ AY L ITD++PL+ 
Sbjct: 1   MKYEIDIIKQMGFPEYFLIVQDFIKHAKENGIPVGPGRGSAAGSLVAYTLGITDVNPLQH 60

Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            L+FERFLNPDR+SMPD DIDFC + R ++I YV+NKYG + VAQIIT+  +++K  +RD
Sbjct: 61  GLIFERFLNPDRISMPDIDIDFCMENRPKIIEYVRNKYGEQAVAQIITYNFMKSKMVIRD 120

Query: 461 VGRALQMPYSQVDRLCKLIPNDPAHPVSL---QAIADDSRFREARLADPSVDRLLEISQK 517
           V R L  PYS+ D++ K+I   P    +L   + +  +  FR+    D  V +LL++++K
Sbjct: 121 VARVLGFPYSEADKIAKMILPGPVQGSTLTIEENLEANPEFRKLYETDERVRKLLDLAKK 180

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
           LEG  RH   HAAGIVI   PL + VP+Y D +     TQF+M  +E  GL+K DFLGLK
Sbjct: 181 LEGSARHTGIHAAGIVIAPGPLDEYVPVYVD-KDGTKATQFDMSTLEMLGLVKMDFLGLK 239

Query: 578 TLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
           TLT L      + +R G+ ++   + FDD   Y LL +  T G+FQLES GM+  L  ++
Sbjct: 240 TLTELDYMRKLIKERHGIDLNFLELGFDDPNVYKLLQSGKTTGVFQLESKGMQNLLAKLK 299

Query: 637 PDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKI 671
           PD  ++IIA+++L+RPGP+ + +V  Y  RK+G++K+
Sbjct: 300 PDKFDEIIAILALFRPGPLMSGMVDEYIERKHGRKKV 336


>gi|74316846|ref|YP_314586.1| DNA polymerase III subunit alpha [Thiobacillus denitrificans ATCC
           25259]
 gi|74056341|gb|AAZ96781.1| DNA polymerase III, alpha subunit [Thiobacillus denitrificans ATCC
           25259]
          Length = 1023

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 254/876 (28%), Positives = 418/876 (47%), Gaps = 64/876 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L   S+++ L GA     ++ + A     A+A+TD  +L   +     A A G++ I
Sbjct: 3   YAELHCLSNFTFLRGASHPEELVARAAELGYAALALTDECSLAGVVRAHTAAKACGMKLI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G +    + + L++              V+L +   GY  L   ++       G+   R
Sbjct: 63  VGSEFT--LVEGLRL--------------VVLATDRAGYGALSAFIT------HGR---R 97

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
             L     +G + L  L  G  G +          +A+ R +  +  F  R ++  +R R
Sbjct: 98  NALKGRYRLGLDDL--LASGLPGCLVVLLPEPLPTLAQARQIVAR--FPRRAWLAAERFR 153

Query: 191 GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
             D   R + + +L     LP VA  +            D L A+     +++       
Sbjct: 154 ASDDAARLAALDELGEAAGLPRVAAGDVHMHVAGRRALQDTLTAIRLGVPLAEAGAALHP 213

Query: 249 TPDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + +L+  S++ +++   P A L  T+ +A RCSF L       P  +  E +      
Sbjct: 214 NGERHLRAPSDLATLY---PAAWLAETLVVAARCSFSLDELRYEYPEELVPEGET----P 266

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + LR     GL  R   G  AK       R  ++ EL +I  +++  YFL V D +++A
Sbjct: 267 ISHLRRLTEDGLVRRFPDGPPAK------VRTLVEHELALIEELRYEPYFLTVHDIVRFA 320

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           +   I +  GRGS A S   YAL IT+++P    +LFERF++ +R   PD D+DF  +RR
Sbjct: 321 RSRGI-LCQGRGSAANSAVCYALFITEVNPACMDMLFERFISKERNEPPDIDVDFEHERR 379

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           +EVI+Y+  KYG +R A   T  + + K+ALRDVG+AL     QVDRL +         V
Sbjct: 380 EEVIQYLYTKYGRDRAALAATVITYRPKSALRDVGKALGFDLDQVDRLARSTSWWDGRKV 439

Query: 488 SLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
           + Q      R  EA    A P V  LL+  ++L G  RH S H  G VI    LSQLVP+
Sbjct: 440 APQ------RLVEAGFDPAHPKVRLLLDRVEELLGFPRHLSQHVGGFVIARGQLSQLVPI 493

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
                 +  + Q++   ++  GL+K D L L  L+ ++++LD L + RG +++LS IP +
Sbjct: 494 ENAAMPERTIIQWDKDDLDALGLLKVDVLALGMLSAIRRALDELGRLRGRRLELSDIPSE 553

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
           D   Y +L    T+G+FQ+ES      L  M+P    D++  V++ RPGPI   ++  Y 
Sbjct: 554 DPAVYDMLGRADTIGVFQIESRAQMSMLPRMRPRNFYDLVIEVAIVRPGPIQGGMIHPYL 613

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
            R+ G E +      +  +L+ T GV I+QEQVMQ+A + +G++  EAD +RR+M   + 
Sbjct: 614 RRRQGLEPVTYPSEAVRGVLERTLGVPIFQEQVMQLAIVAAGFTPGEADQVRRSMAAWRR 673

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
           +  ++  + R I G  + G  ++ A  IF+ +  F +YGF +SHAA++A++ Y +AW+K 
Sbjct: 674 RGGLEHFERRLIDGMRERGYDESFAQQIFQQILGFGEYGFPESHAASFALLVYVSAWLKR 733

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNR--I 835
           H P  F  A +  +        +  QDAR+  ++++   V     D  +    G  +  +
Sbjct: 734 HEPAAFTCALLNSQPMGFYAPAQLVQDARRHAVEVLSVDVTASAWDCTLEPAAGSRKPAL 793

Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              L  +KG+       +  A A +PF S+ED   R
Sbjct: 794 RLGLRMVKGLSLECGARVAAARAQQPFASVEDLARR 829


>gi|293605789|ref|ZP_06688163.1| error-prone DNA polymerase [Achromobacter piechaudii ATCC 43553]
 gi|292815838|gb|EFF74945.1| error-prone DNA polymerase [Achromobacter piechaudii ATCC 43553]
          Length = 851

 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 246/851 (28%), Positives = 399/851 (46%), Gaps = 97/851 (11%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  LQ  S++S L+GA     ++ + A     A+A+TD  +L   +    +A    + 
Sbjct: 19  PGYAELQCQSNFSFLQGASHPEELVARAAELGYAALALTDECSLAGVVRAHTEAKTQKLP 78

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            +IG    +    +         P      + LL  T EGY  L EL++ +      K  
Sbjct: 79  LLIGATFQLRAAPD-------AAPL----GLTLLAQTREGYGNLSELIT-LARTRAPKGE 126

Query: 129 VRIC----------LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK-RLLTFKKL 177
            R+            + L ++  E L +LT         A+  ++ ++AE+ R L   ++
Sbjct: 127 YRLAPDDLTHPPKGYAHLAQV-PECLAILTP--------AYGTDADRLAEQARWLA--RV 175

Query: 178 FGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
           F +R +V L   +R  D    + V   A   +LP+VA              HD L  +  
Sbjct: 176 FPNRAWVGLNLLYRSRDDQHRAAVEHAARQAQLPIVAVGQVQMHVRSRKPLHDTLTGIRT 235

Query: 237 STVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
              V++         + +L+ R  + +++   PEAL  T+ +ARRC+F L          
Sbjct: 236 RQPVARCGYELSENAEQHLRTRMRLANLYP--PEALAQTLVVARRCAFSL---------- 283

Query: 296 IEKECDDIQKEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                D++  E  +E           LR + +AG   R   G        ++   +++ E
Sbjct: 284 -----DELHYEYPDEIVPAGHTPATYLRQETLAGAARRFPAGV------PENVAGQIEKE 332

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           L++I  +++  YFL V D +Q+A+   I +  GRGS A S   Y L IT +DP R + LF
Sbjct: 333 LDLIGELRYEAYFLTVYDIVQYARSQGI-LCQGRGSAANSAVCYCLGITAVDPARGNNLF 391

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           ERF++ +R   PD D+DF   RR+EVI+Y+ +KYG +R A      S + ++ LRD G A
Sbjct: 392 ERFISKERNEPPDIDVDFEHQRREEVIQYIYDKYGRDRAALTAVVISYRPRSVLRDTGSA 451

Query: 465 LQMPYSQVDRLCKLIPNDPAHPV---------SLQAIADDSRFREARLADPSVDRLLEIS 515
           L +    +D + +      AH           +L A   D   R AR       +   ++
Sbjct: 452 LGVDLGVIDAVAR------AHQWWDGKKEMLRTLGACGLDPESRVAR-------QWASLA 498

Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
           Q + G  RH S H  G VI    LS+LVP+      D  V Q++   ++   L+K D L 
Sbjct: 499 QTMMGFPRHLSQHPGGFVISRGKLSRLVPIENAAMQDRSVVQWDKDDLDALKLLKVDVLA 558

Query: 576 LKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
           L  L+ L+++L+   + RG  + L  IP  D  TY ++    T+G+FQ+ES      L  
Sbjct: 559 LGMLSALRRTLELAGERRGQPLALQDIPEGDTATYDMICDADTVGVFQIESRAQMTMLPR 618

Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           ++P    D++  V++ RPGPI   +V  Y  R+ GKE        +  +L  T GV I+Q
Sbjct: 619 LRPRKYYDLVVQVAIVRPGPIQGGMVHPYLRRRQGKEDETYPSEKVRGVLSRTMGVPIFQ 678

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           EQVMQIA + +G++  EAD LRR+M   K K  +DK + + + G   +G     A  +F 
Sbjct: 679 EQVMQIAVVAAGFTPGEADQLRRSMAAWKRKGGVDKFRIKLVGGLLAHGYKLEFAEALFR 738

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +  F +YGF +SHAA++A+++Y ++W+K H P  FLAA +  +        +  QDAR+
Sbjct: 739 QVEGFGEYGFPESHAASFALLAYFSSWLKRHEPEAFLAALLNSQPMGFYAPAQLVQDARR 798

Query: 812 FNIQIMPPSVN 822
             + ++P  V 
Sbjct: 799 HGVCVLPADVT 809


>gi|255021587|ref|ZP_05293630.1| DNA polymerase III alpha subunit [Acidithiobacillus caldus ATCC
            51756]
 gi|254968975|gb|EET26494.1| DNA polymerase III alpha subunit [Acidithiobacillus caldus ATCC
            51756]
          Length = 993

 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 272/1000 (27%), Positives = 449/1000 (44%), Gaps = 94/1000 (9%)

Query: 29   LNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD-IDMQDNLKMTN 87
            +  ++++ A      +AIT+  +L SA      A  AG++ I+G +   +D Q+      
Sbjct: 1    MEALVERAAQLGYAGLAITEECSLISAPRAHVAAREAGLKLILGSRFRLVDGQE------ 54

Query: 88   QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML 147
                       +VLLV  A GY  L +L+  +     GK   R  L W       GL+ +
Sbjct: 55   -----------LVLLVQDARGYAALAQLIG-LARGRAGKGDYR--LEWADLFPCPGLLAI 100

Query: 148  T---GGSSG--PIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQ 202
                 G +G  P   A           RL    +  GD    + QR  G  R+ E   ++
Sbjct: 101  LLPDWGRAGEPPAILAELSRHWGRERLRLGLVLRYRGD----HSQRLAGLRRWMEGTGIR 156

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMV 261
                  + +        L        DVL A+     +S+         + +L++R+++ 
Sbjct: 157  GLACGAVTMARRRERFLL--------DVLTAIRLGRPLSELGWALAANGEAHLRSRAQLD 208

Query: 262  SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
            +++      L  T+ +A  C+F L     +  R+    C  +++  E  LR  A AGL +
Sbjct: 209  TLYPQ--NLLAETLAVAASCTFSLDS---LRYRYPPGTCP-LERSPEEHLRFLAKAGLGL 262

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
            R   G   K        ++L+ EL ++  + +  YFL V + +Q+AK   I +  GRGS 
Sbjct: 263  RYPDGIPGK------VARQLEEELRIVHELGYGPYFLTVHEIVQFAKSRGI-LCQGRGSA 315

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            A SV  YAL IT++DP R +LLF RFL+ +R   PD D+DF  +RR+EVI++V  +YG  
Sbjct: 316  ANSVLCYALGITEVDPTRGNLLFSRFLSRERGEPPDIDVDFEHERREEVIQFVFARYGRR 375

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
              A   +    + ++ALRD  RAL    ++ D L + +       +  + + +     E+
Sbjct: 376  HAALTASVRHYRPRSALRDAARALGFSTAEQDALGRGLAWWDGRRLRPERLREAGFDPES 435

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
                P+V RLL ++  L GL RH S H  G+V+   PL  LVP+     +   V Q++  
Sbjct: 436  ----PAVQRLLVVANALVGLPRHLSQHVGGMVLSAEPLDALVPIEPARMAGRTVIQWDKN 491

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             ++  G++K D L L  L++L+++LD L        L+ IP +D   Y +L    +LG+F
Sbjct: 492  DLDLLGILKVDLLALGMLSVLRRALDDLG-----CTLADIPPEDPAVYAMLQRGESLGVF 546

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLID 679
            Q+ES      L  ++P C  D++  V++ RPGPI   +V  Y  R+ G E +    P + 
Sbjct: 547  QVESRAQMSMLPRLKPRCFYDLVIEVAIIRPGPIQGGMVHPYLRRREGLEPVHYPGPEVR 606

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASK 738
             +L+ T GV I+QEQVMQIA   +G+    AD LRRAM    +   +   +ER   G   
Sbjct: 607  KVLERTLGVPIFQEQVMQIAMEAAGFDGDAADGLRRAMAAWRRHGNLGPYQERLREGLRA 666

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             G   T A  + + +  FA+YGF +SHAA++A++ Y +AW+K H+P  F AA +  +   
Sbjct: 667  RGYDDTFAQQLCQQIQGFAEYGFPESHAASFALLVYASAWLKCHHPAVFSAALLNSQPMG 726

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM---- 854
                 +  ++AR+  + ++P S+     D +     +      ++G+    A+ I+    
Sbjct: 727  FYAPAQIVREARERGVTVLPLSIRHSVWDSRAHGRTLRLGFHQLRGLPREVAQRIVAWRE 786

Query: 855  EASADKPFDSLEDF-CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            +  A  P   +++  C R + ++L R        AGA +  G  R Q L  +  ++    
Sbjct: 787  QGGALDPVALVQELGCPRAEVERLAR--------AGAWEEEGLDRRQSLWQVAAVRAATP 838

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
                        + A    T                 R +  Q  LG     HPL   +P
Sbjct: 839  LPLAPAAEPKMALAATPAAT---------------RCRIDYAQ--LGLSLGPHPLHFLRP 881

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             L+  G +   E      G   R+A +V  +Q+  T  G+
Sbjct: 882  HLQAEGCRPIAELGRAFAGGARRIAGLVTHRQRPATAHGT 921


>gi|261253395|ref|ZP_05945968.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891]
 gi|260936786|gb|EEX92775.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891]
          Length = 1023

 Score =  318 bits (814), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 232/748 (31%), Positives = 368/748 (49%), Gaps = 65/748 (8%)

Query: 181 RLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
           RL++ +QRH   D  +Y E    QLA    LP+ A    L  +         L A+ H  
Sbjct: 145 RLWLAVQRHLSCDDKQYLEY-CQQLAEQLHLPITACGGVLMHTATRLPLQHTLTAIKHGC 203

Query: 239 VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            V++     +T  +  L+++ ++  +F   PE L  +V IA RCSF L+           
Sbjct: 204 SVNELGEQLLTNTERSLRSQEKLSKLFK--PEWLAESVAIAERCSFSLK----------- 250

Query: 298 KECDDIQKEEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               ++Q E  +EL           R     G + R  +G         D +Q ++ EL 
Sbjct: 251 ----ELQYEYPSELVPDGYSPMSYLRQLVETGKKRRFPEGV------PSDIQQTINKELC 300

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
           +I  + +  YFL + D + +AK+++I +  GRGS A SV  Y L IT +DP + S+LFER
Sbjct: 301 LIEELNYPFYFLTIHDIVMFAKRHHI-LYQGRGSAANSVVCYCLEITAVDPRQISVLFER 359

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           F++ +R   PD D+DF  +RR+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL 
Sbjct: 360 FISKERDEPPDIDVDFEHERREEVIQYIYQKYGRERAALAATVISYRFKSAVRDVGKALG 419

Query: 467 MPYSQVDRLCKLIP-NDPAHPVSLQAIADDSRFREARLADPSV--DRLLEISQKLEGLYR 523
           +  SQ+D   K +   D A     Q +       E  L   S+  ++ + +   + G  R
Sbjct: 420 IEESQLDYFIKNVNRRDRAQGWQAQIV-------ELGLQPDSLKGEQFITLINDILGFPR 472

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
           H S H  G +I   PL +LVP+     +D  V Q++   +E   L+K D L L  L+ ++
Sbjct: 473 HLSQHVGGFIIAAGPLYELVPVENASMADRTVIQWDKDDLESLKLLKVDVLALGMLSAIR 532

Query: 584 KSLDFLAQRGVKVDLSLIPF----DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
           K  + L ++  +  LS+       DD   Y ++    T+G+FQ+ES      L  ++P  
Sbjct: 533 KCFN-LVEKYHQQSLSIAEITRRQDDANVYQMIQRADTVGVFQIESRAQMSMLPRLKPAT 591

Query: 640 IEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             D++  +++ RPGPI   +V+    R+NG+E+I      +  +L+ T GV I+QEQV++
Sbjct: 592 YYDLVIQIAIVRPGPIQGDMVHPFLKRRNGEEQINYPSEEVRSVLQRTLGVPIFQEQVIK 651

Query: 698 IAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           IA + +G+S  EAD LRRAM   K   ++ K K + I G    G     A  IFE +  F
Sbjct: 652 IAMVAAGFSGGEADQLRRAMAAWKKSGDLVKFKTKLIEGMLSRGYELEFAKRIFEQILGF 711

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            +YGF +SH+A++AV++Y +AW+K +YP  F  + +           +  QDA +  + I
Sbjct: 712 GEYGFPESHSASFAVLAYCSAWLKHYYPEAFYTSLLNSLPMGFYSASQLVQDAHRHKVVI 771

Query: 817 MPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
           +P  VN    D ++    G   I      IKG    +A+ ++ A A   F        ++
Sbjct: 772 LPICVNVSLYDHQMVSHQGGWAIRLGFRQIKGFSPQSAKQLIHARAKSGFTH----AGQI 827

Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQ 900
               LNRR ++ L  A A+     +R Q
Sbjct: 828 KHIGLNRRDVDLLASANAMHTLSQNRYQ 855


>gi|281416111|ref|YP_003347847.1| gp197 [Mycobacterium phage ET08]
 gi|255927790|gb|ACU41411.1| gp197 [Mycobacterium phage ET08]
          Length = 1172

 Score =  317 bits (813), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 252/980 (25%), Positives = 438/980 (44%), Gaps = 113/980 (11%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-AAGIQPIIG 72
            L  H   S+L+G      +  +       ++AITD +++     F QKAC AAG++P++G
Sbjct: 49   LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRF-QKACQAAGVKPVLG 107

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             +    +  N+  + + KT       IVLL     G + L  L S  Y  +Q  +  ++ 
Sbjct: 108  AEQRWML--NIADSRERKTGASDSSHIVLLAENNIGLRNLWALSSLAYEPEQFYKKPQLD 165

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
               L +   +GL    G            +   +A +       +FGD  Y  L   +  
Sbjct: 166  PGLLMQY-RDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTWQFI 224

Query: 193  DRYRESQ-------------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            +     Q              V+LA    +PLV  N++ +  E  ++ H  +  ++  + 
Sbjct: 225  NPVSPEQQALNAKMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMSTGSW 284

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIF-------SDLPEALENTVEIARRCSFILQVHAPIL 292
               +   R     ++ N  E+           S + EA+ N+  IA +C+  +      +
Sbjct: 285  KKDQHEERGHAADWMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKLLAM 344

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            PR    + +D                +E    +  + KG     YRQRL++E  +I    
Sbjct: 345  PRLHATDAEDAAAFRR---------AIEEGFKRFVVDKGLPEDVYRQRLEYEAKLIIDKN 395

Query: 353  FSGYFLIVADFIQWAKKNNIP-------------VGPGRGSGAGSVTAYALTITDIDPLR 399
             +GYF +VAD++  A+                   GPGRGS  GS+  Y + IT IDP++
Sbjct: 396  MAGYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIK 455

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            + L+FERF+NPDR   PD D+DF + ++  V +Y+  +YG   V  I T    + +  L+
Sbjct: 456  YDLMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQ 515

Query: 460  DVGRALQMPYSQVDRLCKLI---------------PNDPAHPVS---LQAIADDSRFREA 501
            D+ RA  +P+ ++ ++  L+               P D   P     LQ I  +      
Sbjct: 516  DLCRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPEDEDPPTWGEVLQEIGGELAPYAK 575

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL-SQLVPMYRDVRSDLPVTQFNM 560
            +  D     L  + +++  + R    H AG+++   P+   L+P  R   +D+  TQF+M
Sbjct: 576  KYPD-----LFNLMEQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDM 630

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF---------------- 603
              +E+ G +K D L  K L +L  + D + +R GV +D     F                
Sbjct: 631  YELEELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVIALNEER 690

Query: 604  --DDHETYHLLTTKGTLGIFQLES-SGMRQALEGMQPDCIEDIIALVSLYRPGPI---DN 657
              +D   Y  +    T G+FQ+ + +G + A+   +P  + D+  L S+ RPG       
Sbjct: 691  YLNDPAIYDQIDRGQTAGLFQVNTPAGTKLAMR-FKPRSVVDMADLASINRPGVTRVPGL 749

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLK-----ETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +  Y  R++G+E++   HPL++ +        T G+++YQEQ+++ A+ L+G++  EA+ 
Sbjct: 750  LDKYIERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAER 809

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKN------GISKTIAVNIFELLAKFADYGFNKSHA 766
            LR+ +GKK  E +++ + +F+ G   N      G ++ +A  I++ L     Y FNKSH 
Sbjct: 810  LRKGIGKKKMEIINELEPKFLDGCMANSEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHG 869

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
              YA+   Q AW+K +Y  EF+   + +  D   K  +F ++ RQ    ++PP VN    
Sbjct: 870  VGYALQPCQEAWVKHYYFDEFITGCLVIHTD---KTIRFLRECRQRKRAVLPPDVNQSGA 926

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD-SKKLNRRVLESL 885
             F + D  I + L  I G+G      I+   A++PF  L+DF +R   S    + V+++L
Sbjct: 927  GFTLTDEGIRFGLTDISGIGDAAMPDIL---ANRPFKDLDDFLARASKSGGAKKGVVDAL 983

Query: 886  VFAGALDCFGYSRMQLLQSL 905
            +  GA D  G  R  +L+ +
Sbjct: 984  IKVGAFDFTGEHRQVMLEKV 1003


>gi|239994182|ref|ZP_04714706.1| putative DNA polymerase III alpha chain [Alteromonas macleodii ATCC
           27126]
          Length = 918

 Score =  317 bits (813), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 228/736 (30%), Positives = 371/736 (50%), Gaps = 45/736 (6%)

Query: 183 YVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           Y+  QR   G D +R +    L   +  P++A    L    +      VL A+   T V 
Sbjct: 37  YIGAQRLLDGRDHHRFAHYNHLQSAYPFPVIACTGVLMHHADRLPLQHVLHAINVHTSVD 96

Query: 242 QKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ---VHAPILPRFIE 297
           +  R  ++  +  L+   ++  ++ +  + + NT  +A   +F L+    H P       
Sbjct: 97  KIGRDALSNAERSLRTVQKIKKLYPE--KWIANTNALAHAFTFSLEELRYHYP------- 147

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            E         + LR +  AG++VR  +G         D RQ ++ EL +I   ++  +F
Sbjct: 148 AELVPEGYTPTSYLRERVEAGIKVRFPEGITP------DIRQTIEKELTLIDEQEYEYFF 201

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           L + D +Q+AK+  I +  GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD
Sbjct: 202 LTIYDIVQFAKRQRI-LYQGRGSAANSVVCYCLEITAVDPRQISVLFERFISKERNEPPD 260

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D+DF   RR+EVI+Y+  KYG ER A   T    + K+A +DVG+AL    SQ+D + K
Sbjct: 261 IDVDFEHQRREEVIQYIYQKYGRERTAIAATVICYRFKSAFKDVGKALGFSESQLDFVVK 320

Query: 478 LIP-NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            I   D   P   Q        +E     P V +L+ +++ L G  RH S H  G VI  
Sbjct: 321 QINRRDSVIPWKSQLAGLGLNPKE-----PRVQQLITLTEALLGTPRHLSQHVGGFVISA 375

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            PL  LVP+      +  + Q++   IE  GL+K D L L  L+ ++++   L  +   V
Sbjct: 376 GPLYDLVPVENAAMEERTIIQWDKDDIETLGLLKVDVLALGMLSAIRRAFS-LINKQYPV 434

Query: 597 DLSLIPF-----DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
           + S IPF     DD + + ++    T+G+FQ+ES      L  ++P    D++  +++ R
Sbjct: 435 ETS-IPFITKLGDDKQVFDMICRADTVGVFQIESRAQMSMLPRLKPRRYYDLVVQIAIVR 493

Query: 652 PGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
           PGPI  D +  Y  R++G E I      ++ +L  T GV I+QEQV+Q+A + +G+S  E
Sbjct: 494 PGPIQGDMVHPYLIRRHGNETISYPSKDVEKVLSRTMGVPIFQEQVIQLAMVAAGFSGGE 553

Query: 710 ADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
           AD LRRAM    K+  + + +++ I G +  G   T A N+FE +  FA YGF +SH+A+
Sbjct: 554 ADQLRRAMASWKKDGRIFEFRDKLIKGMTDKGYDSTFAHNLFEQIKGFAGYGFPESHSAS 613

Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
           +AV++Y + W+K ++PVEF  A +           +  QDA++ +I++  P VN   V+ 
Sbjct: 614 FAVLAYVSCWLKFYFPVEFYVALLNSWPMGFYSPSQLVQDAKRHHIRVEAPCVNQSDVEH 673

Query: 829 KV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +     +  I   L  IKG+   +++ I+E  +DK + ++E    ++    L    LE+
Sbjct: 674 SLVVQGQEKYIQLGLKLIKGLSEASSQLIVENRSDKGYTNVE----QLQQLSLKSNELEA 729

Query: 885 LVFAGALDCFGYSRMQ 900
           L  A AL     +R +
Sbjct: 730 LASADALRTISGNRYE 745


>gi|253699165|ref|YP_003020354.1| DNA polymerase III subunit alpha [Geobacter sp. M21]
 gi|251774015|gb|ACT16596.1| DNA polymerase III, alpha subunit [Geobacter sp. M21]
          Length = 1079

 Score =  317 bits (812), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 243/836 (29%), Positives = 394/836 (47%), Gaps = 74/836 (8%)

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPD------HYLKNRSEMVSIFSDLPEALENTVE 276
            +D+  H VL A+  +T +S     R+TP+        L    +M   F   PEAL+N++ 
Sbjct: 252  DDFHLHRVLRAIHLNTKLS-----RLTPEMTATESDALYPAQKMAEFFPHCPEALQNSIR 306

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            IA  C       + I P F E   +             A   L+ R  QGAI + Y + D
Sbjct: 307  IASLCKTDWDFSSTIFPAFRELGTE------------AAFETLQERARQGAIWR-YGSID 353

Query: 337  YR--QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
             R   RLD EL++I    FS YFL+V +  + +++       GRGS A S+ AY L IT 
Sbjct: 354  DRVQARLDKELSIIRDKGFSHYFLVVEELTKQSERTC-----GRGSAAASLVAYCLAITH 408

Query: 395  IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
            +DP+R +L FERFLN  R   PD D+DF  D RD ++ +   +YG  R A +      + 
Sbjct: 409  VDPIRHNLFFERFLNEGRSDPPDIDVDFPWDERDAILDFAFARYGAHRAAMVANQVGFKG 468

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            ++ALR+V +   +P  ++  + + I        S  A++    F+   L+      ++  
Sbjct: 469  RSALREVAKVYGLPDYEIKEMTERISGFWRAEQSAAAMSGHPLFKGESLSS-DWQEIMST 527

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            +++L G  RH S H  G+VI    + + VP+    +  LP+ Q+     E AGL+K D L
Sbjct: 528  ARRLNGQLRHLSLHCGGLVIVPDEIRKYVPVEISHKG-LPLIQWEKDQTEDAGLVKIDIL 586

Query: 575  GLKTLTLLQKSLDFLA-QRGVKVDLSLI-PFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            G ++L +++ ++  +  Q+GV++D +   P DD  T  LL    T+G F LES  +R  L
Sbjct: 587  GNRSLAVIRDAMAAVKEQKGVEIDYATWRPLDDERTQSLLRRGLTIGCFYLESPSVRLLL 646

Query: 633  ----------EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
                      E  + D  E ++   S+ RP     I  Y  R  GK     +HPL++ +L
Sbjct: 647  RKIWSSTAPPETFRHDLFEVLVQASSIIRPAANSFIQEYVARLQGK-PWSHLHPLLESVL 705

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE-MDKQKERFISGASKNGI 741
             ET G+ IYQEQ+ QIA  L+G+S  E D LR+ + KK +E+ +   + +F++G  + G+
Sbjct: 706  GETLGIAIYQEQITQIAMELAGFSAGEGDQLRKVITKKHREKRLADFRAKFMAGGMERGV 765

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
             + +   I++ +  FA Y F K H+A+YA++S + A+MK ++P +F+AA ++ +      
Sbjct: 766  PEKVLQGIWDQILSFAGYSFCKPHSASYALLSGKAAYMKANHPAQFIAAVISNQGGYYSP 825

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA-RHIMEASADK 860
               +  + R+  + I+PP +N     +   +  +   L  I G+    A R + E     
Sbjct: 826  F-AYISEGRRLGLAILPPDINESEYHYTGKEQTLRVGLMQIDGLTRDGADRLLKERREHG 884

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKN 918
             F S ++F  R    +L R   E LV AG  D       R  LL  L + Q+ A  +   
Sbjct: 885  AFASFKEFLRRA---RLQRADAERLVKAGCFDALEGEEKRPTLLWELLHFQQQATAL--- 938

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL-RK 977
                           F  K  L      ++ +    E   LGF  S HPL +YK    R 
Sbjct: 939  --------------LFEQKTELPHPPPYDAQMVLRQEVETLGFLVSRHPLALYKAQWQRH 984

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              IK  E    T  G  + +    ++ +  + + G  + +++F +    ++A FFP
Sbjct: 985  RPIKASELIRHT--GKWVTMVGWWITTKTVEDKHGRPMEFISFEDVTAIFDATFFP 1038



 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 44/110 (40%), Gaps = 17/110 (15%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL  HSS S   G  S   +    A      +AITD N L+    F   A   GI PI
Sbjct: 2   FIHLHAHSSLSPNWGVHSPETLCSHAALLGFNTLAITDRNGLYGVPRFLDAARETGISPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
           IG +          +T   +         VLL    EGY  +  L+S ++
Sbjct: 62  IGTE---------AVTQNNRA--------VLLACNEEGYANISRLISDLH 94


>gi|87199556|ref|YP_496813.1| DNA polymerase III, alpha subunit [Novosphingobium aromaticivorans
            DSM 12444]
 gi|87135237|gb|ABD25979.1| error-prone DNA polymerase, DnaE-like protein [Novosphingobium
            aromaticivorans DSM 12444]
          Length = 1078

 Score =  317 bits (812), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 246/849 (28%), Positives = 399/849 (46%), Gaps = 59/849 (6%)

Query: 182  LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVV 240
            L V +QR  G D  R +Q   L     +PL+AT ++L+   +    HDVL  +    T+ 
Sbjct: 153  LAVTMQRG-GTDARRLAQAQALGAACGVPLLATCDALYDHPDARPLHDVLTCIREGVTIA 211

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                R     + +LK  +EM  +F   PEA+  +VEI  R +F L               
Sbjct: 212  EAGQRLLANAERHLKLPAEMARLFRSHPEAVTASVEILSRITFTL--------------- 256

Query: 301  DDIQKEEENELRNKAV---AGLEVRLAQG--AIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            DD++ E  +E   +     A LE  + QG  A+      ++Y+  L  E  +I +  ++ 
Sbjct: 257  DDLRYEYPHEPVPEGWQPQAWLEHLVQQGGEALFPDGLPENYQAVLRQEFCLIRKKNYAY 316

Query: 356  YFLIVADFIQWAKKNNIPV-GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFL V D ++ A+  + P+   GRGS A S+  Y L IT IDP+R  LLF RFL+  R  
Sbjct: 317  YFLTVHDIVRHARSLDPPILCQGRGSAANSLVCYFLGITPIDPVREQLLFSRFLSEMRDE 376

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF  +RR+E+++Y+  +YG ER     T    + ++A+R+VG+ L +      R
Sbjct: 377  PPDIDVDFEHERREEIMQYIYARYGRERAGIAATVIHYRPRSAIREVGKVLGLTEDVTAR 436

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            L   I  +    V    +A+        +A+P V RL  +  +L    RH S H  G V+
Sbjct: 437  LASTIWGNWGKDVPEAYVAEAG----LDIANPVVARLKALVDQLLTFPRHLSQHVGGFVL 492

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +  L +LVP++     D    +++   I+  GL+K D L L  LT ++KS D L +  V
Sbjct: 493  TESRLDELVPIHNAAMPDRTFIEWDKDDIDALGLMKVDILALGMLTAIRKSFDLLRRHDV 552

Query: 595  KVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
              DL+L  +P DD  TY +L    ++G FQ+ES      L  M+PDC+ D++  V++ RP
Sbjct: 553  -ADLTLASVPHDDRATYAMLKRGDSIGTFQVESRAQIAMLPRMKPDCLYDLVIQVAIVRP 611

Query: 653  GPIDNIVV--YNNRKNGKEKIV--SIHPLIDP-----MLKETQGVIIYQEQVMQIAQLLS 703
            GPI   +V  Y  R+NG+E  V  S  P  DP     +L +T GV ++QEQ M++A + +
Sbjct: 612  GPIQGGMVHPYLRRRNGEEAAVFPSPAPPHDPHELHKVLGKTLGVPLFQEQAMKLAIVAA 671

Query: 704  GYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
             ++ ++AD LRRAM   +    +   ++  I G    G  +  A   +E +  F +YGF 
Sbjct: 672  RFTPAQADGLRRAMATFRHHGTVHNYEDLLIDGMVARGYEREFAERCYEQIKGFGEYGFP 731

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            +SHA A+  ++Y ++W+K H+P  F  A +  +        +  +DA+Q  +++    VN
Sbjct: 732  ESHAQAFGWLAYVSSWLKCHHPAAFTCALLNSQPMGFYAPAQLVRDAQQHGVEVRAVDVN 791

Query: 823  TPCVDF-----KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
                D      K G   +    + I G     A  + +A  D  F S+ED   R +   +
Sbjct: 792  ASHWDCTLAGGKGGPFALQLGFSRIDGFRRAWAEALAQARHDGMFTSIEDVARRAE---M 848

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
              + L  L  A   D FG        SL + ++ A W  +        +FA        +
Sbjct: 849  PPQALRKLADA---DAFG--------SLASSRRDALWDVRRTPPTQLPLFAFANAPELGQ 897

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
                + S          + +       GHP+   +  L + G+    E+     G  +R+
Sbjct: 898  EPDARLSAMPLPEEVVADYQTTRLSLKGHPMQFLRDALARKGVLSCAEANTAADGRKVRV 957

Query: 998  AAMVVSKQQ 1006
            A +V+++Q+
Sbjct: 958  AGVVLTRQR 966


>gi|283769527|ref|ZP_06342423.1| DNA polymerase III, alpha subunit [Bulleidia extructa W1219]
 gi|283103795|gb|EFC05181.1| DNA polymerase III, alpha subunit [Bulleidia extructa W1219]
          Length = 1015

 Score =  317 bits (811), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 254/914 (27%), Positives = 438/914 (47%), Gaps = 72/914 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL V S YS  +  + L + +         ++ ++D N L     FS+     GIQ I
Sbjct: 14  FSHLLVTSEYSFYQSTIRLEDYVRYAKKLGYQSLVLSDHNVLSGHDRFSKLCAKEGIQAI 73

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G ++D+ ++++            TVP  ++L    +GYQ   EL+   Y + Q      
Sbjct: 74  FGMEMDVQIENS------------TVP-FLILAKDNQGYQ---ELIRYSYQISQTG---- 113

Query: 131 ICLSWLQEIGTEGLI-MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +S+ Q     G I ++  G  G  D A      ++ E +L  F++    R +     +
Sbjct: 114 -SVSYDQLKNHSGHIHIIVYGEGGLFDEALLKGQREILEIQLTQFQEDL--RFFDVAISY 170

Query: 190 RGYDRYRESQVV--QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
               ++RE  V+  Q+  +  +P VA +   +L+  + +   VL  +     +     P 
Sbjct: 171 NENQKFRECNVLLKQVCRSKNIPTVAISKVKYLTSSEAKDFHVLELLGKKKTIHDPGVP- 229

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR-FIEKECDDIQKE 306
           V    Y  +  E+   + D  E  E    +A  C   L +    LP+ F  K+     K+
Sbjct: 230 VLVGRYFYSDEEIHQYYDD--EEQERASSLAGECHVNLTLFQTQLPKPFFLKD-----KD 282

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
           E+  L+     GL+ RL    I K Y       R+  E N++   +F  YFLIV + I++
Sbjct: 283 EKTYLKQLVFLGLQKRLQTKEIPKAYLT-----RIQMEFNIVCEKRFERYFLIVYEAIRY 337

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A+K N+ +GPGRGS  GS+ AYA+ I+ IDPL++ LLFERFLNP+R  MPD DID     
Sbjct: 338 ARKQNLLIGPGRGSAVGSLMAYAMGISQIDPLKYGLLFERFLNPNRTKMPDIDIDIASQD 397

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA-H 485
           R  ++ Y+Q  YG+E VA I TF SL +   ++ + +   +   +   L   +    A +
Sbjct: 398 RPLLLNYLQKIYGYEHVALISTFHSLASVEVIQALCQCYTLKEREARSLSLAVKKARAKY 457

Query: 486 PV-SLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            V +L+ + + D   + A     +   +  ++QKLEGLY   S H AGIV+ ++ L  +V
Sbjct: 458 KVDNLRVLQERDIALQNAVKQSKACQEVFAMAQKLEGLYTSDSIHPAGIVLSEKSLLDVV 517

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
           P+     +     Q++   +E  GLIK DFL L  L  L+   + L Q  +K+D   +  
Sbjct: 518 PVMES--NGFLKIQWDKDTLETHGLIKMDFLSLSNLDFLK---ELLHQTNLKIDTPHLDL 572

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
           +D ++Y LL    T G+FQL++  +RQ L  ++P+   +++ ++ + RP  + +I  Y  
Sbjct: 573 EDQDSYALLNRGLTAGLFQLDAPFLRQQLPRLKPNSFMELVNVLGIARPQAVQHIPQYVE 632

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            K   E   SI  L+    K T GV I+QEQVM++   ++G + ++A+ +R+  G K  E
Sbjct: 633 NKRS-EYPKSIQELV----KNTHGVFIFQEQVMRLLVEVTGMNFAQAETIRKN-GCKEPE 686

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKF-ADYGFNKSHAAAYAVISYQTAWMKTH 782
            +   +E+F +          I  N++ ++ +F + +GFN SH  AY +++YQ  ++K H
Sbjct: 687 LIKGLEEKFTA----------IHPNLWRVIQEFISGFGFNLSHGVAYGLLAYQMLYIKAH 736

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP-PSVNTPCVD--FKVGDNRIYYSL 839
            P+ F +  +   + +   +    ++ R   +Q +P  S +  C +   ++    I   L
Sbjct: 737 DPLTFYSVLLNQSLKSNSLMATILKEMR---LQKIPFYSFDLRCQEAYCRMDKEGIQLGL 793

Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            AI  +   T   I  +   + P+++     +R+    ++   +   +  GALD FGYSR
Sbjct: 794 MAIPSLRYETIEAIQKDFKENGPYENYFQCVARLSLLGIHSEQVLECIKVGALDFFGYSR 853

Query: 899 MQLLQSLDNIQKYA 912
             L+  L++  +YA
Sbjct: 854 SALIHQLEDAFRYA 867


>gi|107023760|ref|YP_622087.1| error-prone DNA polymerase [Burkholderia cenocepacia AU 1054]
 gi|116690846|ref|YP_836469.1| error-prone DNA polymerase [Burkholderia cenocepacia HI2424]
 gi|105893949|gb|ABF77114.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia AU 1054]
 gi|116648935|gb|ABK09576.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
          Length = 1071

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 282/1050 (26%), Positives = 462/1050 (44%), Gaps = 106/1050 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     ++++        IAITD  +L  A      A   G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASHAEELVERAVKLGYRGIAITDECSLAGAPRMHVAAKEEGLS 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +IG   D+   +       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVIGSYFDVTPDE----VAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMEAPKGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             ++    L     +   +        I    +   + V + ++  F+  FG+R  V L Q
Sbjct: 124  YKLTSRMLSAPPAKFAHLRGMPDCFAILVPTYPVRADVLDAQVAWFRATFGERARVGLVQ 183

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D  +  ++        + LVA  +            DV+ A+     V++     
Sbjct: 184  LQRALDGVQRDEIRAAGKRRGVRLVALGDVTMHVRSCKPLQDVMTAIRVGMPVAECGYA- 242

Query: 248  VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            + P  + +L++R  +  +FS   E +  T  +   C F L               DD++ 
Sbjct: 243  LAPNAEQHLRSRGRIAKLFS--AEEIAETCAMLDACDFDL---------------DDLKY 285

Query: 306  EEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            E   EL           + +  AG+  R   G   K        +++ +EL +IA++++ 
Sbjct: 286  EYPLELVPRGHTPTSYLKQETWAGVARRYWNGVPEK------VAKQIRYELALIAKLEYE 339

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             +FL V D +++A+  NI +  GRGS A SV  Y L IT+++P + ++LFERF++  R  
Sbjct: 340  PFFLTVYDIVKYARSQNI-LCQGRGSAANSVVCYCLGITEVNPDQSTMLFERFISEKRGE 398

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+++  KYG +R A      + + +  LR+ G+AL +    VDR
Sbjct: 399  PPDIDVDFEHQRREEVIQHIYEKYGKDRAALAAAVSTYRPRGVLRETGKALGVDPMLVDR 458

Query: 475  LCKLIPNDPAHPVSLQAIADDSR-----FREARL--ADPSVDRLLEISQKLEGLYRHAST 527
            + K       H        D SR     F    L  A P +    E++ +L    RH S 
Sbjct: 459  VAK------GH-----RWFDGSRDLLQQFASTGLDPATPIIQTWAELAGRLLNFPRHLSQ 507

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            H+ G VI    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ D
Sbjct: 508  HSGGFVISRGKLTRLVPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFD 567

Query: 588  F-LAQRGVKVD-----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
               A RG   D     L  IP DD  TY ++    T+G+FQ+ES      L  ++P    
Sbjct: 568  LRTAWRGPAKDGKLFTLKHIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRNYY 627

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKN-----GKEKIVSIHP--LIDPMLKETQGVIIYQEQ 694
            D++  VS+ RPGPI    V+   K      G+EK    +P   +  +L  T GV I+QEQ
Sbjct: 628  DLVVQVSIVRPGPIQGGAVHPYLKRRRIVAGEEKGEVTYPSDALKEVLVRTLGVPIFQEQ 687

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            VMQIA + +G++  EAD LRRAM   K K  ++K +++ ISG  +   ++  A  IFE +
Sbjct: 688  VMQIAIVAAGFTPGEADDLRRAMAAWKRKGNLEKYQDKIISGMLERNYTREFAEQIFEQI 747

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++  
Sbjct: 748  KGFGEYGFPESHAASFAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHR 807

Query: 814  IQIMPPSVNTPCVDFKV----------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
            ++++P  V     +  +          G   +   L+ ++G+    AR I  A    PFD
Sbjct: 808  VKVLPIDVTQSGWEASLEALPDQPPPHGQPAVRLGLSLVRGLSEAAARRIEAARTAGPFD 867

Query: 864  SLEDFCSRVDSKKLNRR-VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
            S++    R    +L RR +             G+ R  L Q++                 
Sbjct: 868  SIDSLARRA---QLERRDLEALAAANALATLAGHRRDALWQAVA-------------AAP 911

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
              ++ A      +++  L   S  +  +    +    G   + HP+ + +P LR   +  
Sbjct: 912  ERDLLAAAPIDEAEQPALGAPSEADDIL---ADYHTTGLTLNRHPVALLRPALRAQRLSS 968

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              E      G   R   +V+++Q   T KG
Sbjct: 969  AAELRDRPDGRLARACGLVIARQMPGTAKG 998


>gi|326774355|ref|ZP_08233620.1| DNA polymerase III, alpha subunit [Streptomyces cf. griseus
            XylebKG-1]
 gi|326654688|gb|EGE39534.1| DNA polymerase III, alpha subunit [Streptomyces cf. griseus
            XylebKG-1]
          Length = 1147

 Score =  316 bits (810), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 291/1069 (27%), Positives = 479/1069 (44%), Gaps = 82/1069 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S VHL V S YS   GA    +++ K A      +A+ D + +   + F+  A   GI+P
Sbjct: 2    SGVHLHVSSGYSARYGASLPADLVRKAAERGVGTLALADRDTVAGTVRFAHAAVRTGIRP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV-------LLVSTAEGYQRLIELVSRMYLL 122
            + G ++ +          + +TP      +V       LL  T  G+ RL  +VS  +  
Sbjct: 62   VFGVEVAVAPYTPSGPAPRRRTPVRGGAHVVEARYRVTLLARTRAGWARLCRIVSAAHAA 121

Query: 123  DQGKQSVRICLSW--LQE-IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
                  V   + W  LQE +  E L++L G  S P+ RA       VA + L  ++ + G
Sbjct: 122  PVDGVPV---VGWPVLQEYLAGEELVVLLGPVSEPV-RALSAGRPDVAGRLLEPWRVVAG 177

Query: 180  -----DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
                 + +++N Q          ++ +QL   H +P+V +N   + S + +   DVL A 
Sbjct: 178  AGLRLEAVWLNRQGTGPGSLRLAARTLQLGEQHTVPVVVSNAVRYASPDQHRLADVLDAA 237

Query: 235  AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE-----------IARRCSF 283
                 +  +D      + +LK    M  I   + EA     E            A  C  
Sbjct: 238  RLLRPIGPRDLD--GGERWLKGPEAMAGIAGRIAEAAGAGPERAAALLAETAATADSCRL 295

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR--QRL 341
                     P F E +       + + +R      L  R   G  A+G   +D R  ++L
Sbjct: 296  DPADLGMGRPHFPEPQAVGAGTGQGDAMRL-----LRQRCEAGMTARGLD-RDGRASEQL 349

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            ++EL VI R+ + GYFL VA  +   +   I V   RGSGAGS+  +AL I   +PL   
Sbjct: 350  EYELGVIGRLGYEGYFLAVAQVVADVRAMGIRVA-ARGSGAGSMVNHALFIATANPLEHR 408

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFL+  R S+PD D+D    RR EV   +  ++G  RVA      + +A+ ALRD 
Sbjct: 409  LLFERFLSERRTSLPDIDLDVESARRLEVYDRIFERFGSSRVAVTGMPETYRARHALRDT 468

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            G AL MP  Q+  + K  P+  A  +   A+A+    R           L E+++ L+GL
Sbjct: 469  GLALGMPPQQIAGITKSFPHIRARDIR-SALAELPELRGLAARAGEFGPLWELAEGLDGL 527

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK--WIEKAGLIKFDFLGLKTL 579
             R  + H  G+++ +  L   VP+ +      P+ Q +     +E  GL+K D LG++  
Sbjct: 528  PRGYAMHPCGVILSNTTLLDRVPV-QPTPGGYPMLQADKADVELEGYGLLKLDVLGVRMQ 586

Query: 580  TLLQKSLDFLAQ-RGVKVDLSL---IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            + +  ++  + +  G ++DL     +  +D +T+ L+    TL  FQ+ESSG    L  +
Sbjct: 587  SAMAHAVSEIRRTTGRQLDLDSPDHVDLNDQKTFELIRAADTLACFQIESSGQLDLLSRL 646

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYN---NRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            QP  ++DIIA +SL+RPGP+   +       R  G       HP + P+L +T GV+I+ 
Sbjct: 647  QPRHLQDIIADISLFRPGPVAGGMPARFIAARHGGTPHYP--HPDLVPILDDTGGVVIWH 704

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG-ISKTIAVNIFE 751
            EQ++ I   ++G   +  DV RRA+     + +   +  F   A+ +G  +  +   ++ 
Sbjct: 705  EQIIAILARMTGCDRAAGDVARRALAA--PDRLPGVEAWFRQAATASGRYTPRVIDEVWA 762

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD-NVEKIKKFCQDAR 810
            ++ +F  YGF ++HA A+AV + Q+AW+K HYP    A +  LE D  +   +    DAR
Sbjct: 763  VIKEFGAYGFCRAHAVAFAVPAVQSAWLKAHYPAALYAGA--LEHDPGLWPARVIAADAR 820

Query: 811  QFNIQIMPPSVNTPCVDFKV---GDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            + ++ ++P  +NT    + V   G    +  SL+ + G+       I E    +P+ SL+
Sbjct: 821  RHDVPVLPVDINTSKAQYAVERAGSGWGVRISLSTVHGISEGEVARIAEG---QPYTSLQ 877

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            DF +R   K      +E L+  GALD      SR  LL     + + A      RT    
Sbjct: 878  DFYARAHPKLPT---VERLISVGALDQVKGEASRRDLLLQAAELHRQA------RTRPGT 928

Query: 925  NIFAHEKGTFSDKIT-LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                     ++   + L + +  +   R + E  VL    S H L+ +  +LR++G    
Sbjct: 929  GQLTLASAPYAAGASGLREMTARD---RLDAELGVLKIDVSRHLLEDHHRLLREIGATDA 985

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   A   G  + +A +  S Q      G RI +VT  + +   +  FF
Sbjct: 986  QHLGAMHPGQRVLVAGVRSSTQTPPIASGKRIIFVTLEDGSGLVDLAFF 1034


>gi|323499375|ref|ZP_08104351.1| error-prone DNA polymerase [Vibrio sinaloensis DSM 21326]
 gi|323315560|gb|EGA68595.1| error-prone DNA polymerase [Vibrio sinaloensis DSM 21326]
          Length = 1023

 Score =  316 bits (810), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 228/766 (29%), Positives = 380/766 (49%), Gaps = 63/766 (8%)

Query: 181 RLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           RL++ LQRH    D+       QLA    LP+ A    L  +        V+ A+     
Sbjct: 145 RLWIGLQRHLEANDKAYTQHCEQLAQELMLPITACGGVLMHTATRLPLQHVMTAIKQGQS 204

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-----QVHAPILP 293
           V Q     +T  +  L+++ ++  ++   PE L+ +V IA RC F L     Q  + ++P
Sbjct: 205 VEQIGSHLLTNTERALRSKEKLAKLYK--PEWLQESVHIAERCEFKLKELQYQYPSELVP 262

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
              E     ++K  E   R +   GL   +A+               ++ EL +I  + F
Sbjct: 263 DG-ETPNSYLRKLVEKGKRQRFPNGLPANVAET--------------IEKELALIEELGF 307

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             YFL + D + +AK+N+I +  GRGS A SV  Y L IT +DP + S+LFERF++ +R 
Sbjct: 308 PFYFLTIHDIVMFAKRNHI-LYQGRGSAANSVVCYCLEITSVDPRQISVLFERFISRERD 366

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
             PD D+DF  +RR+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  SQ+D
Sbjct: 367 EPPDIDVDFEHERREEVIQYIYQKYGRERAALAATVISYRFKSAVRDVGKALGIEESQLD 426

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV-------DRLLEISQKLEGLYRHAS 526
              K +              D S+  +A++ +  +       ++ +E+   + G  RH S
Sbjct: 427 YFIKNVNR-----------RDRSQGWQAQIVELGLQPDSMKGEQFIELVNDILGFPRHLS 475

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            H  G VI   PL +LVP+      D  V Q++   +E   L+K D L L  LT ++K  
Sbjct: 476 QHVGGFVIAAGPLHELVPVENAAMPDRTVIQWDKDDLESLKLLKVDVLALGMLTAIRKCF 535

Query: 587 DFLAQRGVKVDLSLIPF----DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
           D + +   +V LS+       DD   Y ++    T+G+FQ+ES      L  ++P    D
Sbjct: 536 DLVKRLDNQV-LSIAEITRRQDDPNVYDMIQQADTVGVFQIESRAQMSMLPRLKPATYYD 594

Query: 643 IIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
           ++  +++ RPGPI   +V+    R++G E +      ++ +L  T GV I+QEQV+++A 
Sbjct: 595 LVIQIAIVRPGPIQGDMVHPFLKRRDGIEPVTYPSKEVEEVLSRTMGVPIFQEQVIKLAM 654

Query: 701 LLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
           + +G+S  EAD LRRAM   K   ++ K K + I G    G  +  A  IF+ +  F +Y
Sbjct: 655 VAAGFSGGEADSLRRAMAAWKKNGDLIKFKNKLIEGMRSRGYEQEFAERIFDQILGFGEY 714

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           GF +SH+A++AV++Y +AW+K +YP  F  + +           +  QDA++ ++ ++P 
Sbjct: 715 GFPESHSASFAVLAYCSAWLKYYYPEAFYTSLLNSLPMGFYSASQLVQDAKRHDVLVLPV 774

Query: 820 SVNTPCVDFKV--GDNRIYYSLA--AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            VN    D +V    N++   L    IKG    ++  +++   ++ F       +++   
Sbjct: 775 CVNQSLYDHQVVKCGNKLAIRLGFRQIKGFSRESSLQVIKVRGNQSFSH----PNQLKHI 830

Query: 876 KLNRRVLESLVFAGALDCFGYSRMQ----LLQSLDNIQKYAQWVEK 917
            L+RR +E L  A A+     +R Q    ++ SL ++  + Q  E+
Sbjct: 831 GLSRRDIELLASADAMQAIAQNRYQARWSMMDSLSDLPLFQQIQEQ 876


>gi|187922215|ref|YP_001893857.1| DNA polymerase III subunit alpha [Burkholderia phytofirmans PsJN]
 gi|187713409|gb|ACD14633.1| DNA polymerase III, alpha subunit [Burkholderia phytofirmans PsJN]
          Length = 1043

 Score =  316 bits (810), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 252/916 (27%), Positives = 435/916 (47%), Gaps = 60/916 (6%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   +++S L GA     ++ + +      +AITD  +L   +    +A    + 
Sbjct: 3   PEYAELFAFTNFSFLRGASHGEELVLRASQLGYSGLAITDECSLAGVVRAHVEAKKEKLP 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            +IG           ++ N  ++P      ++LL    EGY  L E ++    L + + +
Sbjct: 63  LVIGSYF--------QLVNADRSP---AFGLILLAQNREGYGNLSEFIT----LGRMRAA 107

Query: 129 VRICLSWLQEIGT--EGLIMLTGGSSG-PIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
               L    +I    +G   L G      I    F  +      +L     +F  R +V 
Sbjct: 108 KGEYLLTPHDISKPEKGYTHLRGMPDCLAILVPDFPATEDALAVQLEWMNDVFAGRAWVG 167

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           L  H+   D      V  +A  + +P+VAT N +          D + A+     V++  
Sbjct: 168 LTLHQHAMDDIHRGIVEHVADQYRVPVVATGNVVMHVRSRKPLQDTMTAIRLRKTVAECG 227

Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                  + +L++R  + +++     AL  T+ I  RC+F L       P       D++
Sbjct: 228 YDLAPNAEGHLRSRFRLGNLYPT--RALYETLNILERCNFSLDELRYEYP-------DEL 278

Query: 304 QKE---EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             E    E  LR +   G   R   G         + +++++ EL +I  +++  YFL V
Sbjct: 279 VPEGFTHEAYLRQETYIGAHRRYPNGI------PHNVQEQIEHELQLIRELEYEAYFLTV 332

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            D +++A+  +I +  GRGS A S   Y L +T++DP R ++LFERF++ +R   PD D+
Sbjct: 333 YDIVRFARSQHI-LCQGRGSAANSAVCYCLGVTEVDPSRGNMLFERFISKERGEPPDIDV 391

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DF   RR+EVI+Y+  KYG +R A      + + + ALR+ G+AL +    VD++ K   
Sbjct: 392 DFEHQRREEVIQYIYRKYGRDRAAIAAAVSTYRPRGALRESGKALGVDPQIVDKVAK--- 448

Query: 481 NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
              +H     +     RF E+ L   +P +    +++ ++    RH S H+ G VI    
Sbjct: 449 ---SHQWFDHSADLLQRFAESGLDPENPLIGLWAKLAAQILNFPRHLSQHSGGFVISRGK 505

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVD 597
           L++LVP+     +D    Q++   +E  GL+K D L L  L+ ++++LD ++++ G + +
Sbjct: 506 LTRLVPVENATMADRSAIQWDKDDLEALGLLKIDVLALGMLSAIRRTLDIVSEQCGERFE 565

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           +  IP +D  TY +++   T+G+FQ+ES      L  M+P    D++  V++ RPGPI  
Sbjct: 566 MQDIPPEDAATYEMISRADTVGVFQIESRAQMSMLPRMKPREFYDLVIEVAIVRPGPIQG 625

Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             V  Y  R+ G E +      ++  L  T GV I+QEQVMQ+A L +G++  EAD LRR
Sbjct: 626 GAVHPYLRRRQGLEPVTYPSDALEVALGRTLGVPIFQEQVMQVAILAAGFTPGEADQLRR 685

Query: 716 AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           AM   K K  +DK  +R ++G ++ G +K  A +IF+ +  F +YGF +SHAA++A++ Y
Sbjct: 686 AMAAWKRKGGLDKYYDRIVNGMTERGYTKDFAESIFQQIHGFGEYGFPESHAASFALLVY 745

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD------F 828
            ++W+K H P  FLAA +           +  QDA++  ++++P  V     D       
Sbjct: 746 ASSWLKCHEPEAFLAAMLNSMPLGFYSASQLIQDAQRHGVKVLPADVTISNWDSVLERET 805

Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                 +   L+ +KG+    A  I  A A + F S+ D   R    +L+R  L+ L  A
Sbjct: 806 SASRPSVRLGLSLLKGMKDGAAERIEAARAVRQFSSVSDLARRA---QLDRNDLKVLAAA 862

Query: 889 GALDCFGYSRMQLLQS 904
            +L     +R + L +
Sbjct: 863 NSLSLLAGNRREALWA 878


>gi|197106729|ref|YP_002132106.1| DNA polymerase III, alpha subunit [Phenylobacterium zucineum HLK1]
 gi|196480149|gb|ACG79677.1| DNA polymerase III, alpha subunit [Phenylobacterium zucineum HLK1]
          Length = 1085

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 284/1061 (26%), Positives = 462/1061 (43%), Gaps = 127/1061 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSALEFSQKACA 64
            +  LQ  +++S L GA    +++    A    A+ I D N+L      +SA+    +  +
Sbjct: 4    YAELQAVTNFSFLRGASHPGDLVVAADALGMEAVGICDHNSLAGVVRAWSAMRQLHEGGS 63

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            A ++ + GC+LD                    PS+++  S  E Y RL    +R+  L Q
Sbjct: 64   A-VRALTGCRLDF---------------VDGSPSLLVYPSDREAYGRL----TRLLTLGQ 103

Query: 125  GKQSVRICLSWLQEI--GTEGLIMLTGGSSGPIDR--AFFFNSSQVAEKRLLTFKKLFGD 180
             +     C   L +     EG ++L    + P DR  A F ++           K+L GD
Sbjct: 104  RRSEKGACTLRLADFLDHAEGQLVL----AVPPDRLDAAFGDA----------LKRLAGD 149

Query: 181  RLYVNLQRHRGY---DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
               V L   R Y   D  R S +  LA     P+VATN+ L+   E     DVL  +   
Sbjct: 150  LPDVWLAAARRYGARDLKRLSHLQALAEASGAPMVATNDVLYHGPERRPLQDVLTCIREK 209

Query: 238  TVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAP 290
              + +   R +   + +LK   EM  +F+  P A+E TVEIA R  F L          P
Sbjct: 210  CTIHEAGLRLQANAERHLKAPDEMARLFARFPGAVERTVEIAGRIGFDLSQLRYEYPDEP 269

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            + P           K     LR+ A AG   R  +G   K       R+ +  EL++I +
Sbjct: 270  VPP----------GKTAIQHLRDLAWAGAAWRYPEGVPEK------VRKLVAHELDLIEK 313

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS--LLFERFL 408
            + F  YFL V D +++A+     +  GRGS A S   + L IT +DP +    LLF RF+
Sbjct: 314  LDFPNYFLTVHDIVRYARDELKILCQGRGSAANSCVCFCLGITAVDPTKEDQDLLFSRFI 373

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            + +R   PD D+DF  +RR+EV++YV ++YG +R A + T    + + A+R VG+AL + 
Sbjct: 374  SENRGEPPDIDVDFEHERREEVMQYVYDRYGRDRAAIVATVIHYRPRMAIRQVGKALGLT 433

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
                  L   +       V  Q I       +A    P + R   ++Q+L G  RH S H
Sbjct: 434  EDVTAALANTVWGSYGDGVPDQHIRQCGLDPDA----PEIRRATALAQELLGFPRHLSQH 489

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
              G V+  R L + VP+      D    +++   I+  GL+K D L L  LT L+KS + 
Sbjct: 490  VGGYVLTKRRLDETVPIGNAAMKDRTFIEWDKDDIDALGLMKVDVLALGMLTALRKSFEL 549

Query: 589  LAQ--RGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            L     G ++ D++ +P +D   Y +L    ++G+FQ+ES      L  ++P    D++ 
Sbjct: 550  LPPLPDGTRITDIAHVPQEDPGVYDMLCRADSVGVFQVESRAQMSMLPRLKPRRFYDLVV 609

Query: 646  LVSLYRPGPI--DNIVVYNNRKNGKE--KIVSIHPLIDP------MLKETQGVIIYQEQV 695
             V++ RPGPI  D +  Y  R+ G E  +  +  P   P      +L +T GV ++QEQ 
Sbjct: 610  QVAIVRPGPIQGDMVHPYLKRRQGLEPAEFPAPSPAHGPPDELRAVLGKTYGVPLFQEQA 669

Query: 696  MQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            M++A   + ++ SEAD LRR+M   +    + + +E+FI G +  G  +  A   F+ + 
Sbjct: 670  MRLAIEAAKFTDSEADGLRRSMATFRANGRLWEYREKFIRGMTARGYDEGFAQRCFKQIE 729

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F  YGF +SHA ++A++ Y +AW+K H+P  F  A +  +     +  +  +DAR+  +
Sbjct: 730  GFGSYGFPESHAISFALLVYASAWVKRHHPDVFCVAMLNSQPMGFYQPAQLVRDAREHGV 789

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYS-----------------------LAAIKGVGTTTAR 851
            ++ PP V     D  + +     S                          IKG     A 
Sbjct: 790  EVRPPDVMASVWDCTLEETERASSSPVGGGGPRSGGGGLRRRPVRLGFRQIKGFRQDDAE 849

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
             ++ A  +    +++DF     +  L+RR LE L  A A       R Q L ++  +   
Sbjct: 850  RLVRAR-EAGCRTIQDFAQ---AAGLSRRALELLAEADAFRSLSMDRRQALWAVKGL--- 902

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
                     N  E      + +  ++  L  F      V    + R        HP+  +
Sbjct: 903  -----AGELNALEAAPLLARQSAKEQQVLLPFMSPAQHV--AEDYRTTSLSLKAHPVGFF 955

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            +  L +MG            G  + +  +V+ +Q+  T KG
Sbjct: 956  REDLNRMGAVRCGTLKDARGGRRLSVGGLVLVRQRPGTAKG 996


>gi|238028690|ref|YP_002912921.1| error-prone DNA polymerase [Burkholderia glumae BGR1]
 gi|237877884|gb|ACR30217.1| DNA polymerase III, alpha subunit superfamily protein [Burkholderia
           glumae BGR1]
          Length = 1080

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 257/905 (28%), Positives = 415/905 (45%), Gaps = 78/905 (8%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA------------- 55
           P++  L   +++S L GA S + ++ +  A     IA+TD  +L  A             
Sbjct: 8   PAYAELFCRTNFSFLCGASSADELVARAHALGYRGIAVTDACSLAGAPRMHVAVKAKNAE 67

Query: 56  LEFSQKACAAGIQPI---------IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA 106
           LE + KA  AG  P          +G   ++  +      + G         +VLL    
Sbjct: 68  LEAAWKA--AGAPPADRPEPFRLAVGAYFELTPERVAPGGDPGPG----GFGLVLLACNR 121

Query: 107 EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
           EGY  L EL+S    +   K S  +    L     E   +        I    +   + V
Sbjct: 122 EGYGNLSELIS-WRRMAAPKGSYTLTPRMLAAPPPEFAHLRGMPDCFAILVPAYPVRADV 180

Query: 167 AEKRLLTFKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
            + +L      FG+R  + L Q  R  D      +        +PLVA  +         
Sbjct: 181 LDAQLAWCAAQFGERARLGLVQLGRSLDGLYRETIEAAGVQRAMPLVALGDVTMHLRSRK 240

Query: 226 EAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF- 283
              D++ A+     V +         + +L+    +  +F    EA+  T  +   C F 
Sbjct: 241 PLQDLMTAIRIGRPVGECGYALAANAEQHLRGLGRIARLFPQ--EAIAETCRMLDACRFD 298

Query: 284 --ILQVHAP--ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
              L+   P  I+P  +    D + +E     R +   GL                +   
Sbjct: 299 MGTLKYEYPHEIVPAGM-TPTDYLAQETWRGARKRFPEGLPA--------------EVEA 343

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
           ++  EL +IA M++  +FL V D +++A++ +I +  GRGS A SV  Y L +T +DP R
Sbjct: 344 QIRHELALIAEMEYEPFFLTVYDIVKFAREQDI-LCQGRGSAANSVVCYCLGVTAVDPKR 402

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            ++LFERF++ +R   PD D+DF  +RR+EVI+Y+  KYG +R A      + + + ALR
Sbjct: 403 STMLFERFISRERGEPPDIDVDFEHERREEVIQYIYAKYGKDRTALAAAVSTYRPRGALR 462

Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL---LEISQ 516
           + G+AL +    V+R+ K       H     +    +RF    L DP V  +    E++ 
Sbjct: 463 ETGKALGVDPMLVERVAK------GHRWFDGSADLLARFASVGL-DPEVPLIRAWAELAS 515

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           +L G  RH S H+ G VI    L++LVP+     +   V Q++   +E  GL+K D L L
Sbjct: 516 RLLGFPRHLSQHSGGFVISRGKLTRLVPIENAAMAGRRVIQWDKDDLEALGLMKVDVLAL 575

Query: 577 KTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
             L+ L ++ DF+ A RG ++ L+ +   D  TY +++   T+G+FQ+ES      L  +
Sbjct: 576 GMLSALHRAFDFVEAWRGTRMRLADLEEGDEATYAMISRADTVGVFQIESRAQMSMLPRL 635

Query: 636 QPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
           +P C  D++  V+L RPGPI    V  Y  R+ G E +      + P L+ T+GV I+QE
Sbjct: 636 KPACYYDLVIEVALVRPGPIQGGAVHPYLRRRQGLEPVEYPKEDLKPALERTKGVPIFQE 695

Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           QVMQIA + +G++  EAD LRRAM   K K ++ K +ER + G       +  A  IFE 
Sbjct: 696 QVMQIAIIAAGFTPGEADELRRAMAAWKRKGDLGKYRERIVEGMLARDYPERFADQIFEQ 755

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           +  F +YGF +SHAA++A++ Y ++W+K H P  FLAA +  +        +  QDA++ 
Sbjct: 756 IKGFGEYGFPESHAASFAILVYASSWLKCHEPAIFLAALLNSQPMGFYPPAQLVQDAKRH 815

Query: 813 NIQIMPPSVNTPCVDFKV----------GDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            + + P  V     D  +          G   +   +A + G+G   A  I  A A +PF
Sbjct: 816 GVTVRPIDVTASGWDASLEALPGEPPPAGRPAVRLGMALVAGLGREAALRIEAARAARPF 875

Query: 863 DSLED 867
           +S++D
Sbjct: 876 ESVDD 880


>gi|312887569|ref|ZP_07747163.1| DNA polymerase III, alpha subunit [Mucilaginibacter paludis DSM
            18603]
 gi|311299939|gb|EFQ77014.1| DNA polymerase III, alpha subunit [Mucilaginibacter paludis DSM
            18603]
          Length = 1066

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 260/1012 (25%), Positives = 461/1012 (45%), Gaps = 69/1012 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV S++S + G    + ++++ A      IAITD N++   +     A   GI  I
Sbjct: 3    YAELQVTSNFSFMRGGSHPDELVERAADLGYSKIAITDCNSMAGVVRAHMAAQIKGISLI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSV 129
              C+LD+         + G       PS++   +    + RL  L++   L  ++GK  +
Sbjct: 63   PACRLDL---------HNG-------PSLLAYPTDTSAWGRLCALLTLGNLRTEKGKCEL 106

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
                 +    G + +++      G ++ +F F+ +   ++ L  ++   G++LY+   R 
Sbjct: 107  YKKDLYAHAQGIKFIVI----PPGTLNASFDFDDA--FKQDLEEYRAALGNQLYIAASRS 160

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247
            + G D  R  ++ QL     +P+VAT +  + + E  E  DV   V    T+ +   +  
Sbjct: 161  YSGDDAKRFYRIKQLG----VPMVATGDVHYHNPERRELQDVETCVREKCTIHTAGYKLH 216

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YLK   E+  +F   PEALE T+EIA  C F L     + P ++  +     +  
Sbjct: 217  ANAERYLKPLDELERLFRQYPEALERTMEIADACDFSLDTLKYLEPVWVSPD----GRSA 272

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L      G +   A+  + K      +R++++FEL    + K + YFL + ++ + A
Sbjct: 273  DEHLAELTWKGAKTVFAEDKLPK------HRKQIEFELAFFKKRKLAPYFLRIYEYTREA 326

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             K  I +  GRGS A     + L IT ++P +  LLF RF++  R   PD D+DF  +RR
Sbjct: 327  DKRAI-LYQGRGSAANCTVCFCLGITPVNPDKSRLLFSRFMSDSREEWPDVDVDFEHERR 385

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +E+I+++   YG E  A + T    + K A+RDVG+A+ +    + RL   I +      
Sbjct: 386  EEIIQWIYETYGREHAAIVATVTQERYKGAIRDVGKAMGLSEDTIKRLGGGIWD-----F 440

Query: 488  SLQAIADDSRFREARLADPSV-DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            S +A   +    +    D +V  ++LE++++L G  R    H  G VI    LS + P+ 
Sbjct: 441  SEEAFNRERIIGQGLNPDDTVLKKVLELTEQLMGFPRQLGQHTGGFVIMRCKLSDICPVL 500

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
                 +    ++N   +E  G++K D L L  LT ++K+   + Q   + + L  +P DD
Sbjct: 501  NARMENRTQLEWNKDDLEALGILKVDVLALGMLTCIRKAFSLMKQHYNLPLTLESLPQDD 560

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
               Y ++    TLG+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  
Sbjct: 561  SRVYDMICKADTLGVFQIESRAQMSMLPRLKPRVFYDLVIEVAIVRPGPIQGDMVHPYLR 620

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R++G + I      ++ +L  T+GV ++QEQ M+IA + +G+S +EAD LRR+M   K K
Sbjct: 621  RRDGIDPIEYPSQELEDILGRTKGVPLFQEQAMEIAIVAAGFSPAEADQLRRSMATFKAK 680

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              + + +++ + G    G  +  A  IF+ L  F  YGF +SHA A+A + Y + W+K H
Sbjct: 681  GLVSQFRKKLVDGMVAKGYEEEFAKRIFKQLEGFGSYGFPESHATAFAHLVYISCWLKCH 740

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--FKVGDNRIYYSLA 840
            YP  F  A +  +     +  +   DAR   + +    +N    D   +  D + Y    
Sbjct: 741  YPDVFCTALLNSQPMGFYQPAEIVDDARNHGVSVREVDINYSGWDNTLEDKDGKYYAVRL 800

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
              + V     +  M+   +      +  C   D+  + +  LE L  A A    G  R Q
Sbjct: 801  GFRQVSGLREKD-MQLLINNRGTGYQAICQLHDA-GVPQDALEKLADADAFRSIGSDRRQ 858

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             L           W     ++K   +F  ++   S +I+L   +     V+   +    G
Sbjct: 859  AL-----------WEVSALSDKPTGLFTGQQ-VPSAQISLPIMTPAEHVVQ---DFATTG 903

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
                 HP+   +  L  + +    +      G+ +++A M+  +Q+  T KG
Sbjct: 904  LSLKAHPVSFVREQLDLLKVTPTGQLKNLKNGDQVKVAGMITVRQRPGTAKG 955


>gi|170734171|ref|YP_001766118.1| error-prone DNA polymerase [Burkholderia cenocepacia MC0-3]
 gi|169817413|gb|ACA91996.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia MC0-3]
          Length = 1071

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 280/1050 (26%), Positives = 460/1050 (43%), Gaps = 106/1050 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     ++++        IAITD  +L  A      A   G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASHAEELVERADELGYRGIAITDECSLAGAPRMHVAAKEKGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +IG   D+   +       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVIGSYFDVTPDE----VAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMEAPKGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             ++    L     +   +        I    +   + V + ++  F+  FG+R  + L Q
Sbjct: 124  YKLTSRILSAPPAKFAHLRGMPDCFAILVPTYPVRADVLDAQVAWFRATFGERARLGLVQ 183

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D  +  ++        + LVA  +            DV+ A+     V++     
Sbjct: 184  LQRALDGVQRDEIRAAGKRRGVRLVALGDVTMHVRSCKALQDVMTAIRVGMPVAECGYA- 242

Query: 248  VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            + P  + +L++R  +  +FS   E +  T  +   C F L               DD++ 
Sbjct: 243  LAPNAEQHLRSRGRIAKLFS--AEEIGETCAMLDACDFDL---------------DDLKY 285

Query: 306  EEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            E   EL           + +  AG+  R   G   K        +++ +EL +IA++++ 
Sbjct: 286  EYPLELVPRGHTPTSYLKQETWAGVARRYWNGVPEK------VAKQIRYELALIAKLEYE 339

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             +FL V D +++A+  NI +  GRGS A SV  Y L IT+++P + ++LFERF++  R  
Sbjct: 340  PFFLTVYDIVKYARSQNI-LCQGRGSAANSVVCYCLGITEVNPDQSTMLFERFISEKRGE 398

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+++  KYG +R A      + + +  LR+ G+AL +    VDR
Sbjct: 399  PPDIDVDFEHQRREEVIQHIYKKYGKDRAALAAAVSTYRPRGVLRETGKALSVDPMLVDR 458

Query: 475  LCKLIPNDPAHPVSLQAIADDSR-----FREARL--ADPSVDRLLEISQKLEGLYRHAST 527
            + K       H        D SR     F    L  A P +    E++ +L    RH S 
Sbjct: 459  VAK------GH-----RWFDGSRDLLQQFASTGLDPATPIIQTWAELAGRLLNFPRHLSQ 507

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            H+ G VI    L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ D
Sbjct: 508  HSGGFVISRGKLTRLVPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFD 567

Query: 588  F-LAQRGVKVD-----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
               A RG   D     L  IP DD  TY ++    T+G+FQ+ES      L  ++P    
Sbjct: 568  LRTAWRGPAKDGKPFTLKHIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRNYY 627

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKN-----GKEKIVSIHP--LIDPMLKETQGVIIYQEQ 694
            D++  VS+ RPGPI    V+   K      G+EK    +P   +  +L  T GV I+QEQ
Sbjct: 628  DLVVQVSIVRPGPIQGGAVHPYLKRRRIVAGEEKGEVTYPSDALKEVLVRTLGVPIFQEQ 687

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            VMQIA + +G++  EAD LRRAM   K K  ++K +++ ISG  +   ++  A  IFE +
Sbjct: 688  VMQIAIVAAGFTPGEADDLRRAMAAWKRKGNLEKYQDKIISGMLERNYTREFAEQIFEQI 747

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++  
Sbjct: 748  KGFGEYGFPESHAASFAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHR 807

Query: 814  IQIMPPSVNTPCVDFKV----------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
            ++++P  V     +  +          G   +   L+ ++G+    AR I  A    PFD
Sbjct: 808  VKVLPIDVTQSGWEASLEALPDQPPPHGQPAVRLGLSLVRGLSEAAARRIEAARTAGPFD 867

Query: 864  SLEDFCSRVDSKKLNRR-VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
            S++    R    +L RR +             G+ R  L Q++                 
Sbjct: 868  SVDSLARRA---QLERRDLEALAAANALATLAGHRRDALWQAVA-------------AAP 911

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
              ++ A       D++        + +     +    G   + HP+ + +P LR   +  
Sbjct: 912  ERDLLA---AAPIDEVEQPALGAPSEADDILADYHTTGLTLNRHPVALLRPALRAQRLSS 968

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              E      G   R   +V+++Q   T KG
Sbjct: 969  AAELRDRPDGRLARACGLVIARQMPGTAKG 998


>gi|296447098|ref|ZP_06889030.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b]
 gi|296255367|gb|EFH02462.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b]
          Length = 1065

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 274/1044 (26%), Positives = 458/1044 (43%), Gaps = 103/1044 (9%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSALEFSQK 61
            +P +  L   +++S L GA     ++ +    +   + I D N+L      FS L    +
Sbjct: 2    APRYAELATATNFSFLRGASHPEEMVARALELRHCGVGIADRNSLAGVVRAFSFLREHAE 61

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A A G +  +G +L    +                P I+        Y RL  L++R  +
Sbjct: 62   A-APGFRLAVGARLVFADE---------------TPDILCYPQDRAAYGRLCRLLTRGNM 105

Query: 122  LDQGKQSVRICLSWLQEIGT-EGLIMLTGGSSGP-IDRAFFFNSSQVAEKRL-LTFKKLF 178
              + K   R+ L  L   G  + +I++  G+  P + RAF          RL L    L+
Sbjct: 106  RAE-KGECRLLLDDLLAFGAGQQIIVMENGALPPAVARAF--------RGRLWLAATALY 156

Query: 179  GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            G  +   L R            + LA   +LPL+A N+ L          DVL  V   T
Sbjct: 157  GPDMRAALLRR-----------IALAQETKLPLIAVNDPLMHDPARRPLADVLACVREKT 205

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             + +         +  LK+  EM  +F+  PEA+  T       SF L   A   P    
Sbjct: 206  TLDEAGFLLSANAERCLKSGEEMARLFAAAPEAVAETARFLDGLSFRLTDLAYHYP---- 261

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E  +    E+  L + A  G + R   G        +     L  EL ++A++ ++ YF
Sbjct: 262  SELREGFSSEQEALAHFAREGAKTRYPDGV------PETVEALLRHELKLVAQLNYAAYF 315

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D +++A+   I +  GRGS A SV  Y L +T++DP +  LLFERF++  R   PD
Sbjct: 316  LTVHDIVRFARSRGI-LAQGRGSAANSVICYCLGVTEVDPTKHDLLFERFVSAARNEPPD 374

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  +RR+EV++Y+  ++G ER     +  + ++++A+R+VG+A  +    V RL  
Sbjct: 375  IDVDFEHERREEVMQYIYERFGRERAGLTASVVTYRSRSAIREVGKAFGLSADVVSRLSG 434

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
             +       VS + +A         + DP + + LE++++L G  RH S H  G VI   
Sbjct: 435  NVWGASRGGVSDEGVAHAG----LDMRDPRLAKALELTRELTGFPRHLSQHTGGFVITRE 490

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKV 596
             L ++VP+           +++   ++  G++K D L L  LT ++K L  LA+R GV  
Sbjct: 491  RLDEVVPLAPAAMEGRTTIEWDKDDLDALGILKIDVLALGMLTCMRKGLSLLAERYGVVH 550

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI- 655
             LS IP ++   Y +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI 
Sbjct: 551  RLSTIPAEEKCVYDMISRADTIGVFQIESRAQMSMLPRLRPEKFYDLVIEVAIVRPGPIQ 610

Query: 656  -DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
             D +  Y  R+ GKEK+      ++  L +T GV ++QEQ M+IA +  G++  EAD LR
Sbjct: 611  GDMVHPYLRRRTGKEKVSYPSKELEQALGKTLGVPLFQEQAMRIAIVAGGFTPEEADRLR 670

Query: 715  RAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RAM   K    +   +E+ +SG    G ++  A   +  +  F  YGF +SHAA++A++ 
Sbjct: 671  RAMATFKRVGTIGLFREKMLSGMVARGYARDFAERCWSQIEGFGSYGFPESHAASFALLV 730

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF----K 829
            Y +AW+K  YP  F  A +  +        +  +DA++  + +    VN    D     +
Sbjct: 731  YASAWLKCRYPDVFCCALLNSQPMGFYAPAQIVRDAQEHGVGVHEVDVNFSDWDCTLTPR 790

Query: 830  VGDNRIYYSLAA-----------------IKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             G+ R++    A                 I GV     R ++ A     +DS+ D   R 
Sbjct: 791  AGETRLHPRHVAMAQDIRATQDVRLGFRQIVGVKEEDMRRLV-ARRGAGYDSVRDLWLR- 848

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
               +L+  VLE L  AGA    G  R   L ++  +         NR    +++      
Sbjct: 849  --GELSPAVLERLAEAGAFASLGLPRRDALWAVQGL---------NRVGDKDDLPLLRDL 897

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI---KGYEESVAT 989
             F+ +                 + R L      HP+   +  L   GI           +
Sbjct: 898  AFAPQEPDAHLPPLPPGAEVIEDYRFLSLSLKAHPVAFLRQRLAAKGIVPCSALGGGPTS 957

Query: 990  IR-GNNIRLAAMVVSKQQKKTRKG 1012
            +R G  + +A +V+ +Q+  +  G
Sbjct: 958  VRDGARVMVAGLVLVRQRPGSASG 981


>gi|126738654|ref|ZP_01754359.1| DNA polymerase III, alpha subunit, putative [Roseobacter sp.
            SK209-2-6]
 gi|126720453|gb|EBA17159.1| DNA polymerase III, alpha subunit, putative [Roseobacter sp.
            SK209-2-6]
          Length = 1152

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 238/841 (28%), Positives = 392/841 (46%), Gaps = 54/841 (6%)

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRP 246
            R+ G D+   +Q    A     P+VA  + L       +  DVL  +    T+ +   R 
Sbjct: 240  RYDGSDQAYFAQCHHFARRAAAPMVAVGDVLMHRGSRRQLGDVLTCMREKLTIDAIGTRA 299

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +  LK  ++M  +F   P AL  ++EIA RCSF L   +   P        +I  E
Sbjct: 300  LPNGERRLKAPADMARLFRSYPAALRRSLEIAARCSFCLSQLSYEYP-------SEISAE 352

Query: 307  EENELRNKAVA--GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            E  ++R + +A  GL  R   G  A+      YR   + EL ++A + F+ YFL V D +
Sbjct: 353  EPPQVRLERLAWEGLARRCPDGIPAR------YRAMAEKELRLVADLGFAAYFLTVRDIV 406

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+   I +  GRGS A S+  YAL ITD+ P + S++FERF++  R   PD D+DF  
Sbjct: 407  DYARSQEI-LCQGRGSAANSILCYALFITDVSPEQISMVFERFVSKHRGEPPDIDVDFEH 465

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI---PN 481
            +RR+EVI+++  KYG  R     T    +++AA+R+VG+ + +       L   I    N
Sbjct: 466  ERREEVIQHIYEKYGRHRAGLCSTVIHFRSRAAIREVGKVMGLSEDVTASLSGQIWGQSN 525

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
              A P  ++ +  D       L D  + + + +  ++ G  RH S H  G VI    L +
Sbjct: 526  RGADPERMKELGLD-------LEDRRLAQTIRLIGEIIGFPRHLSQHVGGFVITRGRLDE 578

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--GVKVDLS 599
            L P+      D  + +++   I+  G++K D L L  LT ++KS D L Q   G +  ++
Sbjct: 579  LCPIENAAMEDRTIIEWDKDDIDTLGILKVDVLSLGMLTCIRKSFDLLEQHEGGERWSIA 638

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P DDH TY +L     +G+FQ+ES      L  M+P    D++  V++ RPGPI   +
Sbjct: 639  TVPQDDHPTYDMLCLADAVGVFQVESRAQMNFLPRMRPRRFYDLVIEVAIVRPGPIQGGM 698

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            V  Y  R+ G+EK+      ++ ++ +T GV ++QEQ MQIA + +G++   AD LRR++
Sbjct: 699  VQPYIKRRQGREKVEYPSKELEEVMGKTLGVPLFQEQAMQIAVVAAGFTPEAADQLRRSL 758

Query: 718  GK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
               +    +   ++RFI+G  +       A   F  +  FADYGF +SHAAA+A+++Y +
Sbjct: 759  ATFRRMGTISSFRDRFINGMLERNYDAEFAARCFAQIEGFADYGFPESHAAAFAMLTYIS 818

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----G 831
            AW+K H+P  F  A +  +        +  +DAR   I++ P  VN+   D  +     G
Sbjct: 819  AWLKCHHPAVFACALLNSQPMGFYAPAQIVRDARDHGIEVRPVCVNSSTWDNSLERRADG 878

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               +      IKG  +  A  I+ A      +   D  +      L    LE L  A A+
Sbjct: 879  ALALRLGFRQIKGFRSEDAEWIIAARG----NGYRDPDALWLRAGLRPDALERLAEADAM 934

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
               G  R Q L  +  I+   Q      ++  E     E       + L +  VE+    
Sbjct: 935  ADMGLGRRQALWQVKAIR--GQVPLPLFSDPLEGEGLREPDVVLPPMNLGEEVVEDYV-- 990

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
                   L      HP+++ +P++  +      + +A +      +  +V+++Q+  T  
Sbjct: 991  ------ALRLTLKAHPMELLRPLIPDLTP---HDQLARVPLGQTAVCGLVITRQRPGTAS 1041

Query: 1012 G 1012
            G
Sbjct: 1042 G 1042


>gi|19548804|gb|AAL90799.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548806|gb|AAL90800.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548808|gb|AAL90801.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548810|gb|AAL90802.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548820|gb|AAL90807.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548824|gb|AAL90809.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548828|gb|AAL90811.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548834|gb|AAL90814.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548836|gb|AAL90815.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548838|gb|AAL90816.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548840|gb|AAL90817.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548842|gb|AAL90818.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548844|gb|AAL90819.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548846|gb|AAL90820.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548848|gb|AAL90821.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548854|gb|AAL90824.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548856|gb|AAL90825.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548860|gb|AAL90827.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548862|gb|AAL90828.1| polymerase III subunit alpha [Escherichia fergusonii]
          Length = 328

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 158/329 (48%), Positives = 228/329 (69%), Gaps = 13/329 (3%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
           +TLT++  +L+ + +R  K     +D++ IP DD +++ +L    T  +FQLES GM+  
Sbjct: 180 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 239

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKE 684
           ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E+I        H  + P+L+ 
Sbjct: 240 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 299

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
           T G+I+YQEQVMQIAQ+LSGY+L  AD+L
Sbjct: 300 TYGIILYQEQVMQIAQVLSGYTLGGADML 328


>gi|90417277|ref|ZP_01225203.1| DNA polymerase III, alpha subunit, putative [marine gamma
            proteobacterium HTCC2207]
 gi|90330862|gb|EAS46125.1| DNA polymerase III, alpha subunit, putative [marine gamma
            proteobacterium HTCC2207]
          Length = 1048

 Score =  315 bits (806), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 280/1045 (26%), Positives = 471/1045 (45%), Gaps = 105/1045 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L   S+++ L GA   + ++ + +     AIAITD  +L   ++    A     + 
Sbjct: 2    SYAELHCISNFTFLRGASHPHELVKRASDLNYSAIAITDECSLAGVVKAHVAAIDHDFKL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +D                       L++ A   Q   EL + + L  +     
Sbjct: 62   IIGSEFRLDGHK--------------------LIALAPNRQAYSELSALITLARRRGDKG 101

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               L W    G     +L    S  +D         V  +R       F DRL+V +   
Sbjct: 102  SYQLDWNDLEGNLRNALLIWLPSQQLD---------VDHQRGEQLSNWFKDRLWVGITHL 152

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
              G+D         LA   +LP+VA  +    S +     D L A+ H+  V Q  + R 
Sbjct: 153  LSGHDANDYYYYRNLAAMWQLPMVACGDVHMHSRQRQPLQDTLTAIHHNCSVMQLGQRRF 212

Query: 248  VTPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L+  +++  ++   P AL   T+ IA+RC F L+      P  +  E       
Sbjct: 213  ANSERHLRGLNQLQKLY---PGALLRETLNIAKRCHFSLEELRYEYPSEVVPE----HLT 265

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               +LR     G+  R   G       +Q  R+++++EL VIA + +  YFL V D + +
Sbjct: 266  ATEQLRFLVEQGVAKRWPNGI------SQSIRKQIEYELQVIAELNYESYFLTVEDIVAF 319

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  NI +  GRGS A SV  Y L IT++ P + SLLFERF++ +R   PD D+DF   R
Sbjct: 320  ARSRNI-LCQGRGSAANSVVCYCLFITEVAPDQISLLFERFISRERNEPPDIDVDFEHQR 378

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG +R A   T  S + ++A+RDVG+AL +    +++L + + +     
Sbjct: 379  REEVIQYIYQKYGRQRAALAATVISYRPRSAVRDVGKALGLDALFIEQLSQSM-SWWDRQ 437

Query: 487  VSLQAI----------------ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
              LQA+                  + + +E            ++  ++ G  RH S H  
Sbjct: 438  ADLQALFQQQGGSQEKKNQEKKNQEKKNQEENSQGQIATHFFKLLNEILGFPRHLSQHVG 497

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G +I   P+S LVP+     ++  V Q++   IE  GL+K D L L  L+ + +  D ++
Sbjct: 498  GFIITKSPISTLVPVVNASMAERTVIQWDKYDIEALGLLKIDVLALGMLSAVHRCFDLIS 557

Query: 591  Q-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            Q + + + +  IP DD  TY +L T  ++G+FQ+ES      L  ++P C  D++  +++
Sbjct: 558  QHQQINLTMQSIPKDDPATYDMLCTADSVGVFQIESRAQMAMLPRLKPRCFYDLVIEIAI 617

Query: 650  YRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             RPGPI   +V  Y  R+ G E +      I  +L+ T G+ ++QEQV+++A + +G+S 
Sbjct: 618  VRPGPIQGGMVHPYLRRRQGLETVDYPSQEIKSVLERTLGIPVFQEQVIRLAMVAAGFSG 677

Query: 708  SEADVLRRAMGKKIKEEMDKQ------KERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             +AD LRRAM    K    K       +++   G    G S   A  +F+ +  F  YGF
Sbjct: 678  GQADQLRRAMASSGKSGSGKNSTLAQFEQKLTDGMMARGYSLDFAERLFKQIQGFGVYGF 737

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SH+A++A+++Y +AW+K H+P  F  A +  +        +  QDA++  I+I P  V
Sbjct: 738  PESHSASFALLAYVSAWLKCHHPAAFCCALLNSQPMGFYTPSQLLQDAQRHQIEIRPIDV 797

Query: 822  -------NTPCVDFKVGDNR---IYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFC 869
                   +      + G +    I   L  IKG     A  I+ A ++  + F+SL    
Sbjct: 798  CHSDWEHSLEMGSLEAGSSTEPAIRLGLCLIKGFSYRAAERIVLARSNSQQGFNSLPQL- 856

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            SR  +  L++  L  L  AGAL     +R Q       I+ Y   +E  + +  E++ A 
Sbjct: 857  SR--AAGLSQADLALLSSAGALRSLTSNRRQAHWDALAIEDYRPLLEPAQNS--ESLPA- 911

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
                 S    +E+ + + SS          G     HP+++ +   + +        + T
Sbjct: 912  ---ILSTPSEIEELNADYSST---------GVSLGRHPMEILREQSKTLQRCKRTIDLPT 959

Query: 990  IRGNN--IRLAAMVVSKQQKKTRKG 1012
            + GN   +R+A +V  +Q+  T  G
Sbjct: 960  L-GNRRFVRIAGLVTGRQRPGTASG 983


>gi|19548826|gb|AAL90810.1| polymerase III subunit alpha [Escherichia coli]
          Length = 328

 Score =  315 bits (806), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 158/329 (48%), Positives = 228/329 (69%), Gaps = 13/329 (3%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTQITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
           +TLT++  +L+ + +R  K     +D++ IP DD +++ +L    T  +FQLES GM+  
Sbjct: 180 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 239

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKE 684
           ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E+I        H  + P+L+ 
Sbjct: 240 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 299

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
           T G+I+YQEQVMQIAQ+LSGY+L  AD+L
Sbjct: 300 TYGIILYQEQVMQIAQVLSGYTLGGADML 328


>gi|187478521|ref|YP_786545.1| error-prone DNA polymerase [Bordetella avium 197N]
 gi|115423107|emb|CAJ49638.1| putative DNA polymerase III alpha subunit [Bordetella avium 197N]
          Length = 1048

 Score =  314 bits (805), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 263/903 (29%), Positives = 417/903 (46%), Gaps = 88/903 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-AGI 67
           P +  L   S++S L GA     ++++ A     A+AITD  +L   +    +A    G+
Sbjct: 6   PGYAELDCQSNFSFLTGASHPEELVERAAKLGYAALAITDECSLAGVVRAHVEAGKHPGL 65

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS--------RM 119
           + +IG +L +D        N   TP      +VLL    EGY  L EL++          
Sbjct: 66  KLLIGSRLRLD--------NGTHTPI----ELVLLACDKEGYGNLAELITLGRTRAVKGQ 113

Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
           YLL             L   G EG +    G    +  A+    +++A +      + F 
Sbjct: 114 YLLRPAD---------LTAQGPEGGVP---GCLAILTPAYGQAPAEMAAQ-AQWLARHFP 160

Query: 180 DRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            R +V L Q  R  D    + V   A    LPL A + +          HD L A+    
Sbjct: 161 GRAWVGLAQLQRSRDDLHRAAVQAAAQAANLPLAAISQAQMHVRSRKPLHDTLAAIRSGR 220

Query: 239 VVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            V++         + +L++R  +  ++     AL  T+ IA RC+F L            
Sbjct: 221 SVAECGYDLAANAERHLRSRLRLAGLYP--ASALHQTLAIAERCTFSL------------ 266

Query: 298 KECDDIQKEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
              D+I+ E  +E           LR     G   R   G  A+       R  ++ EL 
Sbjct: 267 ---DEIRYEYPDEIVPAGETPASYLRRATYEGAAARFPDGIPAQ------VRNLIEKELA 317

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
           +I  +++  YFL V D +++A+   I +  GRGS A S   + L IT +DP   + LFER
Sbjct: 318 LIIELRYEAYFLTVHDIVRFARSAGI-LCQGRGSAANSAVCFCLGITAVDPSNGNALFER 376

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           F++ +R   PD D+DF   RR+EVI+Y+  KYG  R A      S + ++ LRD GRAL 
Sbjct: 377 FISKERNEPPDIDVDFEHQRREEVIQYIYRKYGRPRAALTAVVISYRPRSVLRDTGRALG 436

Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
           +  + +D + +           L+ +        +R+A     +   +++ L G  RH S
Sbjct: 437 LDQALIDAVARAHQWWDGKKEMLRTLGQCGLDPGSRVA----RQWAILAETLIGFPRHLS 492

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            H  G VI    LS+LVP+      D  V Q++   ++  GL+K D L L  L+ L+++L
Sbjct: 493 QHPGGFVISRGKLSRLVPIENATMEDRSVVQWDKDDLDALGLLKVDVLALGMLSALRRAL 552

Query: 587 DFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
           + ++QR  + + L  IP DD  TY ++    T+G+FQ+ES      L  +QP    D++ 
Sbjct: 553 ELVSQRRAQPLALHQIPPDDRATYDMICRADTVGVFQIESRAQMSMLPRLQPRAYYDLVV 612

Query: 646 LVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            V++ RPGPI   +V  Y  R+ GKE I      I+ +L+ TQGV I+QEQVMQIA   +
Sbjct: 613 QVAIVRPGPIQGGMVHPYLRRRQGKEPISYPGKAIEKVLERTQGVPIFQEQVMQIAVEAA 672

Query: 704 GYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
           G++  EAD LRR+M   + K  +DK + + I G   +G     A  +F  +  F +YGF 
Sbjct: 673 GFTPGEADQLRRSMAAWRRKGGVDKFRLKLIGGLLAHGYGLDFAEALFRQIEGFGEYGFP 732

Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           +SHAA++A ++Y +AW+K H P  FLAA +  +        +  QDAR+  + ++P  + 
Sbjct: 733 ESHAASFAQLAYASAWIKCHEPEAFLAALLNSQPMGFYAPAQLVQDARRHGVVVLPVDIT 792

Query: 823 TPCVD--FKV--GDNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
               +  F+   G +R  +   L   +G+       I  A  ++P+  + D   R    +
Sbjct: 793 RSRWEAGFETLPGQSRPAVRLGLNQTRGLKQEAGERIAAAHREQPYRDVADLGRRA---R 849

Query: 877 LNR 879
           LNR
Sbjct: 850 LNR 852


>gi|99080016|ref|YP_612170.1| DNA polymerase III, alpha subunit [Ruegeria sp. TM1040]
 gi|99036296|gb|ABF62908.1| DNA polymerase III alpha subunit [Ruegeria sp. TM1040]
          Length = 1126

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 245/844 (29%), Positives = 395/844 (46%), Gaps = 56/844 (6%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSALEFSQK 61
            P +  L V S+++ L GA     ++ + A     AIAITD N+L      +SAL+  ++
Sbjct: 24  GPGYAELCVTSNFTFLTGASHPEELVTRAAELGLAAIAITDRNSLAGVVRAWSALKELRR 83

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVL---------------LVST 105
              AGIQ     ++D   +  +  +   + P  PT+P +++               L   
Sbjct: 84  EAEAGIQIRSHQRVDPSSRQKIDTSAPLEPPAAPTLPKLIVGCRLVLRDSQTDWIALPRD 143

Query: 106 AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
              Y RL    +R+  L + +     C      +    L+    G S     A   +  +
Sbjct: 144 RAAYARL----TRLLTLGKRRAPKGEC-----HLDARDLMAACRGMS---LIALPQSDLK 191

Query: 166 VAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
            A   +   ++ F   +++    R+ G D+   +     A     P+VA  + L      
Sbjct: 192 TAIPEIRRMQQCFPHYVFLGAAPRYDGSDQAYLAACAHAAQITSAPMVAVGDVLMHRASR 251

Query: 225 YEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
               DVL  +  H T+     R     +  LK  ++M  +F   P AL  T+EIA +CSF
Sbjct: 252 RPLADVLTCMREHITIDEIGSRALPNSERRLKAGADMARLFQAHPAALRRTLEIADKCSF 311

Query: 284 ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            L   +   P  I        +  +  L   A  GL  R   G   K          +D 
Sbjct: 312 DLGELSYDYPHEIVD-----GETPQARLERLAAEGLRRRYPDGPTQKAVVL------MDK 360

Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
           EL ++A + F+ YFL V D +Q+AK  NI +  GRGS A S+  Y L ITD+ P   +++
Sbjct: 361 ELKLVAELGFAAYFLTVHDIVQYAKSQNI-LCQGRGSAANSILCYLLGITDVSPDMITMV 419

Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           FERF++  R   PD D+DF  +RR+EVI+++  KYG +R     T    +++AA+R+VG+
Sbjct: 420 FERFVSRYRGEPPDIDVDFEHERREEVIQWIYQKYGRDRAGLCATVIHFRSRAAIREVGK 479

Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            + +       L   I       V L+ I +        + D  + + + +  ++ G  R
Sbjct: 480 VMGLSQDVTAGLSGQIWGMSNGGVDLKRIEELG----LDIQDRRLMQTIRLIGEIIGFPR 535

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
           H S H  G VI    L +L P+      D  V +++   I+  G++K D L L  LT LQ
Sbjct: 536 HLSQHVGGFVITKGRLDELAPIENAAMEDRTVIEWDKDDIDALGILKVDVLSLGMLTCLQ 595

Query: 584 KSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
           KS   L A  G  + +  +P +D +TY +L     +G+FQ+ES      L  MQP    D
Sbjct: 596 KSFALLKAHEGETLSIGTVPQEDAKTYAMLCRADAVGVFQVESRAQMNFLPRMQPREFYD 655

Query: 643 IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
           ++  V++ RPGPI  D +  Y  R+NG E+     P ++ + K T GV ++QEQ MQIA 
Sbjct: 656 LVIEVAIVRPGPIQGDMVQPYIRRRNGLEEPEPFGPELEQVTKRTLGVPLFQEQAMQIAV 715

Query: 701 LLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
           + +G++  EAD LRR++   +    +   +++FI+G    G S+ +A   F  +  FADY
Sbjct: 716 VGAGFTPEEADHLRRSLASFRRMGTIGTFRDKFINGMLDKGYSQEVAARCFSQIEGFADY 775

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           GF +SHAAA+A+++Y +AW+K H+P  F  A +  +        +  +DAR+  ++I P 
Sbjct: 776 GFPESHAAAFAMLAYVSAWLKCHHPAVFACALLNSQPMGFYAPAQIVRDAREHGVEIRPI 835

Query: 820 SVNT 823
            VN 
Sbjct: 836 CVNA 839


>gi|19548852|gb|AAL90823.1| polymerase III subunit alpha [Escherichia coli]
          Length = 328

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 158/329 (48%), Positives = 228/329 (69%), Gaps = 13/329 (3%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
           +TLT++  +L+ + +R  K     +D++ IP DD +++ +L    T  +FQLES GM+  
Sbjct: 180 RTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 239

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKE 684
           ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E+I        H  + P+L+ 
Sbjct: 240 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 299

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
           T G+I+YQEQVMQIAQ+LSGY+L  AD+L
Sbjct: 300 TYGIILYQEQVMQIAQVLSGYTLGGADML 328


>gi|284045697|ref|YP_003396037.1| DNA polymerase III subunit alpha [Conexibacter woesei DSM 14684]
 gi|283949918|gb|ADB52662.1| DNA polymerase III, alpha subunit [Conexibacter woesei DSM 14684]
          Length = 1268

 Score =  314 bits (804), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 258/954 (27%), Positives = 443/954 (46%), Gaps = 129/954 (13%)

Query: 141  TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR-HRGYDRYRES 198
             EGL+ L+G ++             +   RLL  +  FG D L+V LQR +   DR R  
Sbjct: 242  AEGLVCLSGCAA--------HGVHDLDSLRLL--RHAFGRDHLFVELQRPYLRDDRARNR 291

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQKDRPRVTPDHYLKNR 257
            ++ Q A   EL  VAT N+   +       D L+AV  H+T+ + +   R    H L + 
Sbjct: 292  RLQQFARELELRCVATGNTHAHARSRGPLQDALVAVRLHTTLDASEPGRRGNFSHVLTSP 351

Query: 258  SEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
              M + F+ D P+A+  T  +A R  F L        + +       + E  N  R   +
Sbjct: 352  QAMAARFAADHPDAVAETARLADRLRFDLT-------QGLGYRYPGAEDESANR-RLAEI 403

Query: 317  AG--LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK------ 368
             G  L VR    + A    A    +RLD EL +I ++  +G+FL+  + ++ A+      
Sbjct: 404  CGDRLAVRYDDASAADRAEAH---RRLDQELRIIDKLGLAGFFLLHREMLELAREVAVEV 460

Query: 369  ------KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
                  ++ +P G GRGS   S+  Y   ++ +DP+   L   RFLN D  ++PD D+DF
Sbjct: 461  RGPDTARSLLPPGRGRGSSVSSIVCYLTGLSHVDPVANDLFIGRFLNEDLTALPDIDLDF 520

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
             +D R+ +I  + + +GH   A +  F + +A+ A+R++G+AL +P  +++R+ +     
Sbjct: 521  PRDVRERLIPRIHDVFGHRNSALVAAFPTYRARGAIRELGKALGLPPGEIERVAR----- 575

Query: 483  PAHPVSLQAIADD--SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +   S + +A D  +   E RLA      L  ++++  GL RH S H+ G+V+  RPLS
Sbjct: 576  GSEGWSARDVARDVATALGERRLASGRWLWLARLAEQAHGLPRHLSQHSGGMVVATRPLS 635

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
               P+         + Q++      AG +K D LGL  L+ ++++++ +AQ R  ++DLS
Sbjct: 636  DCCPIVPAAMEGRQIVQWDKDSCADAGFLKIDLLGLGMLSAVERAVEAIAQTRDERIDLS 695

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP+DD  TY  +    T G+FQ+ES     +L   +P  +E++   V++ RPGPI    
Sbjct: 696  RIPYDDRPTYEAIQNAETTGVFQIESRAQMASLRRTRPASLEELTIQVAIVRPGPIQGGA 755

Query: 660  V--YNNRK-----NGKEKIVSIHP-LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            V  Y  R+     +    I   HP L++P LKET G II+Q+QV+++A   +G++  +A+
Sbjct: 756  VNPYIERRQRLRVDPGFTIPYDHPSLVEP-LKETLGTIIFQDQVIEVAMAFAGFTPGQAE 814

Query: 712  VLRRAMGKKIKE-EMDKQKERFISG--ASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             LRRAM +K  E  ++    RF++G  A+ + ++  +A  +F+++  F+ +GF K+H AA
Sbjct: 815  GLRRAMSRKRSEAAIEAHHRRFVAGALATHDDVTPELAERVFQMVRGFSGFGFPKAHGAA 874

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            + +++YQ+ W++ HYP EFL A +  +            +A++  I+++ P +N   V+ 
Sbjct: 875  FGLLAYQSTWLRVHYPTEFLCALLNEQPMGFYPPDALVHEAQRRGIEVLAPEINASEVEC 934

Query: 829  KV-------------------------------------------GDNRIYYSLAAIKGV 845
             V                                              R+   L  ++GV
Sbjct: 935  TVEVGPPAGSAPPAGSALPNRAGLLVPQTSRPALIPPTAPTAPDPPSPRVRIGLGYVRGV 994

Query: 846  GTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF--GYSRMQLL 902
                AR ++EA +A  PF  + D  +R  + +     LE+L ++GA D    G  R+ L 
Sbjct: 995  QDHDARALVEARAAGGPFRDVADLAARAGAGRPA---LETLAWSGACDALAGGDRRVALW 1051

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKITLEKFSVENSSVRFEN---EQRV 958
                   +    V   R            GT  +  +TL       +   ++    +   
Sbjct: 1052 -------RLGVAVPGRRV---------PGGTQLALPLTLPGAPELRALGEWDGMLADYDT 1095

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             G     HPL + +P L   G     +  +      +R+A MVV++Q+  T  G
Sbjct: 1096 TGLTARTHPLRLLRPSL-PAGTVASRDLASLPHNAQVRVAGMVVARQRPGTASG 1148



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 16/120 (13%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           S+V L  HS++S L+GA   + +    A     A+A+TD +N+  A+EF++ A A G++P
Sbjct: 4   SYVELHAHSAFSFLDGASLPDELAAAAAELGHEALALTDHDNICGAMEFARSAQALGLRP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I G +L +D  D   +T              LLV +  G++ L  L++  +   +G   V
Sbjct: 64  IHGAELTLD--DGRHLT--------------LLVESEHGWRNLCRLITLAHAHTRGADRV 107


>gi|19548830|gb|AAL90812.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548832|gb|AAL90813.1| polymerase III subunit alpha [Escherichia coli]
          Length = 327

 Score =  313 bits (803), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 157/328 (47%), Positives = 227/328 (69%), Gaps = 13/328 (3%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
           +TLT++  +L+ + +R  K     +D++ IP DD +++ +L    T  +FQLES GM+  
Sbjct: 180 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 239

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKE 684
           ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E+I        H  + P+L+ 
Sbjct: 240 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 299

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           T G+I+YQEQVMQIAQ+LSGY+L  AD+
Sbjct: 300 TYGIILYQEQVMQIAQVLSGYTLGGADM 327


>gi|260060840|ref|YP_003193920.1| DNA polymerase III subunit alpha [Robiginitalea biformata HTCC2501]
 gi|88784970|gb|EAR16139.1| DNA polymerase III alpha subunit [Robiginitalea biformata HTCC2501]
          Length = 1028

 Score =  313 bits (802), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 272/1046 (26%), Positives = 474/1046 (45%), Gaps = 131/1046 (12%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            ++L  H+ YSL  G  S  ++L+    +    +A+TD NN  + L F ++A   G++P++
Sbjct: 1    MYLNCHTYYSLRYGTFSEVDLLELARENGVSCLALTDINNTSAGLNFVRRAPEFGVRPLL 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G    ID ++ ++    G            L     GY  L       +L D        
Sbjct: 61   G----IDFRNGVESCFVG------------LAKNNRGYMEL-----NAFLSDH------- 92

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA---EKRLLTFKKLFGDRLYVNLQR 188
                           L G    P +RA  F+ + V    E+ LL     F    Y+ +  
Sbjct: 93   ---------------LHGKHPLP-ERAPAFSDAVVIYPFERVLLAELGDFAPHEYIGIS- 135

Query: 189  HRGYDRYRESQVVQLAYTHELP----LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-K 243
                       + +L ++H +     LV      F ++ D+ AH +L A+ ++ ++S+  
Sbjct: 136  --------VRDLRRLPFSHLVERRDRLVVLQPVTFRNKRDFNAHRLLRAIDNNALLSKLP 187

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            +  +  P+  +     +  +F++    LENT  +   CS          P+ ++      
Sbjct: 188  ESEQAHPEDCMYALPNLAEVFAEYAFILENTRALMEGCSIHFDFSENRQPQNLDTYTGSR 247

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ--DYRQRLDFELNVIARMKFSGYFLIVA 361
            +++E           L  RL +  +   Y A     R+RL  EL +I    F  YFLI  
Sbjct: 248  EEDE----------ALLERLCEEGMPYRYSAPGPQIRKRLAKELELIRAKGFVSYFLINW 297

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +  A++       GRGSGA S+ AY L ITD+DP+   L FERF+N  R + PDFDID
Sbjct: 298  DIVSEARRRGF-FYVGRGSGANSIVAYLLRITDVDPIELDLYFERFINLFRTNPPDFDID 356

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F    R+ + RY+ +++ H  VA + T+ + + +  +R++G+   +P +++D+LC     
Sbjct: 357  FSWRDREAITRYIFDRFQH--VALLGTYVTFRERGIIRELGKVFGLPKAEIDQLC----- 409

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                         D  +  +RL D     +L   Q + G+  + S HA GI+I  +P+  
Sbjct: 410  -------------DGSYESSRL-DGVARLVLRYGQLIRGMPNYLSVHAGGILIAGKPIHW 455

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ------RGVK 595
                +   +     TQF+M   E AGL KFD L  + L  ++++L+   Q      RGV 
Sbjct: 456  FSATHLPPKG-FATTQFDMVIAEDAGLYKFDILAQRGLAKIKEALEIARQNQPEATRGVD 514

Query: 596  V-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            + D+  I  +D     L+ +   +G F +ES  MR  L+ ++ D    ++A  S+ RPG 
Sbjct: 515  IHDIRKIK-EDPAVNELIRSAQCMGCFYVESPAMRMLLKKLEVDNYLGLVAASSIIRPGV 573

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              + ++  Y  R    E++   HP++  ++ +T GV++YQE V+++A   +G SL EADV
Sbjct: 574  SKSGMMREYILRHRDPERVKQAHPVLLDIMPDTYGVMVYQEDVIKVAHYFAGLSLGEADV 633

Query: 713  LRRAMGKKI--KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            LRR M  K   +EE ++ K  F++   + G ++++   I+E +A FA Y F K H+A+YA
Sbjct: 634  LRRGMSGKFRSREEFERVKAAFVANCRRKGYAESLISEIWEQVASFAGYAFAKGHSASYA 693

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            V SYQ+ +++ ++P+E+L A +        + + +  +AR    ++ PP +N   V  ++
Sbjct: 694  VESYQSLFLRAYFPLEYLVAVLN-NGGGFYRPECYVHEARMLGARVHPPCINRSGVANRI 752

Query: 831  GDNRIYYSLAAIKGV-GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                IY  L  ++ + G    R + +      F  LEDF  RV    ++   L  LV   
Sbjct: 753  EGADIYLGLMYLRELEGRVMDRIVRQRQLGGAFSDLEDFLDRV---PISIEQLSILVRID 809

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A    G  + +LL       K    + +     H  +F  ++  F    +L    +E + 
Sbjct: 810  AFRSTGAEKHRLL------WKAHLLLSRGGVADHPRLFPPQQTKFRIP-SLHGTELETAF 862

Query: 950  VRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             + E    +LGF     P D+  +P   + G + + E +    G  I +   +V+ +  K
Sbjct: 863  TQME----LLGFCLCS-PFDLLEEPPANRNGCRHFPEYM----GRYIDIYGYLVTVKNTK 913

Query: 1009 TRKGSRIGWVTFSEPAKE-YEANFFP 1033
            T  G R+ + TF +   E ++   FP
Sbjct: 914  THNGKRMHFATFIDLYGEVFDTVLFP 939


>gi|207724510|ref|YP_002254907.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            MolK2]
 gi|206589731|emb|CAQ36692.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            MolK2]
          Length = 1081

 Score =  313 bits (802), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 286/1055 (27%), Positives = 468/1055 (44%), Gaps = 113/1055 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA   + ++ +  A    A+A+TD  ++   +     A  AG++
Sbjct: 18   PDYAELHCISNFTFLTGASHPHELVARAKALGYRALALTDECSVAGTVRAHVAAKEAGLK 77

Query: 69   PIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             I+G +  + D Q    +             +VLL    +GY  L E +++  L    K 
Sbjct: 78   LIVGSRFTVRDAQGEPWL------------RLVLLAQDIDGYGNLCECITQARLAAP-KG 124

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL----LTFKKLFGDRLY 183
              R+    L     +GL  L G    P   A          +RL    L  +++FGDRL 
Sbjct: 125  DYRLLADDL-AAPADGLAHLRGM---PHCLAILLPDYDPDPQRLRAQALWCRQVFGDRLS 180

Query: 184  VNLQ---RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            + L+   RH   DR+R + V  ++   ++PLVAT +    S +    HDVL A+  S  +
Sbjct: 181  MALELPLRH-ADDRHRGT-VAAVSEQADVPLVATGDVAMHSRQRKPLHDVLTAIRLSRPI 238

Query: 241  SQKDRPRVTP--DHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAPILPRFI 296
            ++     + P  +  ++ R ++   +     A  L  +VE+A  C F L           
Sbjct: 239  AECGL-ELAPSAEQAMRTRMQLAFFYQGERGAPLLRRSVELASLCDFSL----------- 286

Query: 297  EKECDDIQKEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                D+I+ E  +E           L  + +AG   R  +   AK       R ++  EL
Sbjct: 287  ----DEIEYEYPHEVVPEGLTPAAYLHAEVMAGAARRYGKAIPAK------VRAQIAEEL 336

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             +IA +++  +FL V D +++A+  +I +  GRGS A S   Y L IT++DP   + LF 
Sbjct: 337  ALIAELRYEPFFLTVYDVVRFARSRDI-LCQGRGSAANSAVCYCLGITEVDPESGNTLFA 395

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFL+  R   PD D+DF   RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL
Sbjct: 396  RFLSRARNEPPDIDVDFEHQRREEVIQYIYGKYGLTRTALAAALITYRTRSALRDVGRAL 455

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
             +    ++++ K      A      A A  +  +      P V R   +  +L G  RH 
Sbjct: 456  GIDLGVIEQVAKA----QAWWDGQHAFAQHAGQQGLDPESPLVQRWAGLVGQLRGFPRHL 511

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            S H  G VI    LS+LVP+      D  V Q++   +E   L+K D L L  LT ++++
Sbjct: 512  SQHVGGFVIAQGKLSRLVPIENAAMQDRRVIQWDKDDLESLRLLKVDVLALGMLTAIRRT 571

Query: 586  LDFL-------AQRGVKVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            LD L       A+ G    L++  +P +D +TY +++   T+G+FQ+ES   +  L  ++
Sbjct: 572  LDMLDALPGRRARYGASDKLAMQHLPDEDRDTYDMISRAETIGVFQIESRAQQSMLPRLR 631

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVY------NNRKNGKEKIVSI-HPLIDPMLKETQGVI 689
            P    D++  V++ RPGPI   +V+         +NG    V+   P +  +L+ T GV 
Sbjct: 632  PRTYYDLVIQVAIVRPGPIQGGMVHPYLQRREAMRNGNPDCVTYPGPEVRAVLERTLGVP 691

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASK-NGISKTIAV 747
            I+QEQVM+IA    G++  EAD LRR M   K K  + + +ER +    +          
Sbjct: 692  IFQEQVMEIAMKAGGFTADEADRLRRDMAAWKRKGNLTEHQERLMQEMVEVRHYDPAFVE 751

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             +   +  FA+YGF +SHAA +A ++Y ++++K H P  F AA +  +        +  Q
Sbjct: 752  ALCRQMEGFAEYGFPESHAAGFAKLAYVSSYLKCHEPAAFFAALLNSQPMGFYSPSQLVQ 811

Query: 808  DARQFNIQIMPPSVNTPCVDFKV--------GDNRIYYSLAAIKGVGTTTARHIMEASAD 859
            +AR+  ++++P  V     D  +        G   I   L+ I+G+    A  I+ A A 
Sbjct: 812  EARRSRVRVLPADVTVSAWDSTLHERPHGAGGQPDIRLGLSRIRGMRPPAAERIVAARAQ 871

Query: 860  KPFDSLEDFCSRVDSKKLNRR-VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
             PF S+ED   R     L+R  +         L   G+ R  L Q+L   +         
Sbjct: 872  APFASVEDLAHRA---ALDRHDLSVLAAANALLPLAGHRRQALWQTLALQEPGQDHALLR 928

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
            +    E   A    +  +++  +  S              LG     HPL + +P L +M
Sbjct: 929  QARPVEAPLALPAPSLGEEVVADYGS--------------LGLSLQSHPLSLLRPRLERM 974

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
                         G   R   +V  +Q+  T KG+
Sbjct: 975  RFVTAATLAGYRNGQLARACGIVTVRQRPGTAKGT 1009


>gi|326781155|ref|ZP_08240420.1| DNA polymerase III, alpha subunit [Streptomyces cf. griseus
            XylebKG-1]
 gi|326661488|gb|EGE46334.1| DNA polymerase III, alpha subunit [Streptomyces cf. griseus
            XylebKG-1]
          Length = 1155

 Score =  313 bits (802), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 296/1072 (27%), Positives = 496/1072 (46%), Gaps = 88/1072 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL V S +S   GA    +++ + A     A+A+TD +++  A+  ++   +AG++PI
Sbjct: 4    FTHLHVASGFSARYGASHPQDLVRRAAELGMGALALTDRDSVTGAVRHAKACLSAGVRPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFP-----TVPS--IVLLVSTAEGYQRLIELVSRMYLLD 123
             G  L +   D  + +++ +TP       T P   I LL  +  G+ R+  LVS  +   
Sbjct: 64   FGVDLAVPAFDPARASHRPRTPVRGGGHVTEPRLRITLLAGSVHGWARICRLVSAAHAHP 123

Query: 124  QGKQSVRICLSW--LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                 V    SW  L+E   E ++ + G +S P+ RA       +AEK L+ ++++ G+ 
Sbjct: 124  VDGFPV---ASWEALREGLGEDVVAILGPTSEPV-RALAAGRPDIAEKLLVPWREIAGEG 179

Query: 182  LYVNLQRHRGYDRYRESQVVQLAYTHEL------PLVATNNSLFLSEEDYEAHDVLMAVA 235
            L        G        V   A+T  L      P V TN   +   E +   DVL A  
Sbjct: 180  LLRLEAVAYGLSGLGAGSVRLAAHTLALGDRLGVPTVLTNAVRYERREQHRLADVLDAAR 239

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARRCSF- 283
                V ++  P    + YLK+ +EM  +   +  A           +E T   A +C+  
Sbjct: 240  LLRPVPRRG-PLDPGERYLKSGAEMAEVAERVAAAASAPAGRGRRLIEETAATAEQCAVD 298

Query: 284  ------ILQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
                  + + H P  P  +    +  D ++      LR ++ AG+  R     + +   A
Sbjct: 299  PVRDLGLGRAHFP-EPHVVGAGTRPGDGMRL-----LRQRSEAGMTAR----GLDRDVRA 348

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
             D   RL +EL VI R+ +  YFL VA  +   +   I V   RGSGAGS+  ++L I  
Sbjct: 349  MD---RLGYELGVIERLGYEAYFLAVAQVVADVRSMGIRVA-ARGSGAGSMVNHSLFIAT 404

Query: 395  IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
             DPL   LLFERFL+  R ++PD D+D   DRR EV   +  ++G ERVA      + +A
Sbjct: 405  ADPLSHRLLFERFLSERRTALPDIDLDVESDRRLEVYDRIFERFGSERVAVTGMPETYRA 464

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            + ALRD G AL +    VDR+ K  P+  A  +   A+++    R+          L E+
Sbjct: 465  RHALRDTGLALGIRPQTVDRIAKSFPHIRACDIG-SALSELPELRQLAAEADQYGPLWEL 523

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++ L+ L R  + H  G+++ D  L   +P+        P  Q +   +E  GL+K D L
Sbjct: 524  AEGLDALPRGFAMHPCGVILSDASLLGRLPVQPAPGGAYPTVQADKHDVEDLGLLKLDVL 583

Query: 575  GLKTLTLLQKSL-DFLAQRGVKVDLSL---IPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            G++  + +  ++ +     G  +DL     +   D  T+ L+ +   LG FQLESSG + 
Sbjct: 584  GVRMQSAMAHAVAEIRRTTGRHIDLDSPDHVDLADEPTFELIRSTKVLGCFQLESSGQQD 643

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGV 688
             +  +QP  ++D+IA +SL+RPGP+   +   +   ++G E+    HP + P++ +T GV
Sbjct: 644  LIARLQPRHMQDVIADISLFRPGPVAGGMPARFIAARHGIEEPRYPHPDLVPIMDDTYGV 703

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            +I+ EQ+M I   ++G   + ADV RRA+    +  + K +  F   A + G +  +   
Sbjct: 704  VIWHEQIMMILATMTGCDRAAADVARRALADAGR--LPKVEVWFRRCAGERGYTPDVIDE 761

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD-NVEKIKKFCQ 807
            +++++ +F  YGF ++HA A+AV + Q+AW+KTHYP  F A    L+ D  +   +   Q
Sbjct: 762  VWDIVKEFGAYGFCRAHAVAFAVPAVQSAWLKTHYPAAFFAG--LLQHDPGMWAPRVLVQ 819

Query: 808  DARQFNIQIMPPSVNTP----CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
            DA+QF + I+P  VNT      V+       +  +L+ ++G+    +  I    A +P+ 
Sbjct: 820  DAKQFGVAILPVDVNTSRGAHSVEPTADGWGVRLALSTVRGITEAESARI---EAGQPYT 876

Query: 864  SLEDFCSRV-DSKKLNRRVLESLVFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRT 920
             L+D   R   S  L +R    L+  GAL     G +R  LL     + + A    +NRT
Sbjct: 877  GLQDLWLRARPSLPLAQR----LIRIGALAPLQGGLTRRDLLLQATELHRSA----RNRT 928

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                 +   ++    +   L + +  +       E  VL    S H L+ +  +L ++G 
Sbjct: 929  AIDGQLPLGDETHAGEPAGLPEMTGRDV---MSAEIDVLSIDVSRHLLEHHHRLLAELGA 985

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   A  RG  + +A +  S Q      G R+ +VT  + +   +  FF
Sbjct: 986  TDARHLQAMRRGEQVLVAGVRASTQTPPIPSGKRVIFVTLEDGSGLVDLAFF 1037


>gi|254512034|ref|ZP_05124101.1| putative DNA polymerase III alpha subunit subfamily
           [Rhodobacteraceae bacterium KLH11]
 gi|221535745|gb|EEE38733.1| putative DNA polymerase III alpha subunit subfamily
           [Rhodobacteraceae bacterium KLH11]
          Length = 1127

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 244/854 (28%), Positives = 398/854 (46%), Gaps = 72/854 (8%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSALEFSQKAC 63
            +  L V ++++ L GA     ++ + A     AIAITD N+L      + A++  ++  
Sbjct: 27  GYAELCVTTNFTFLTGASHPEELVTRAAELGLKAIAITDRNSLAGVVRAWVAMKELRREA 86

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE---------------- 107
              +   I  Q  +D     ++ +      P  P +  L+                    
Sbjct: 87  ENAVP--IRSQHRMDSCSRQEIGHPQPISKPDAPRLPQLIVGCRLVLRDSSVDWLALPRD 144

Query: 108 --GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
              Y RL    +R+  L + +     C   LQ+        L G   G I  A      +
Sbjct: 145 RPAYARL----TRLLTLGKRRAGKGECHLDLQD--------LLGACQGMILIALPQAGLE 192

Query: 166 VAEKRLLTFKKLFGDRLYVN-LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
            A   +   ++ F + +++  + R+ G D+   +   Q A     P+VA  + L      
Sbjct: 193 QAIPDIQRIRRRFPNAVFLGAVPRYDGSDQAYLAACAQTAQKASAPMVAVGDVLMHRASR 252

Query: 225 YEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
            +  DVL  +  H T+           +  LK  ++M  +F D P AL  T+EIA RCSF
Sbjct: 253 RQLADVLTCMREHITIDQIGTHALPNAERRLKGYADMARLFQDHPGALRRTLEIADRCSF 312

Query: 284 ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            L   +   P       D+I  EE  + R      LE RLA+  + + Y      + L+ 
Sbjct: 313 DLSELSYEYP-------DEIASEETPQAR------LE-RLARAGLKRRYPGGPPERALNL 358

Query: 344 ---ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
              EL ++A + F  YFL V D +Q+A+   I +  GRGS A S+  Y L ITD+ P   
Sbjct: 359 MQKELALVADLDFPAYFLTVHDIVQFARSQGI-LCQGRGSAANSILCYLLGITDVSPDMI 417

Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
           +++FERF++  R   PD D+DF  +RR+EVI+++  KYG  R     T    +++AA+R+
Sbjct: 418 AMVFERFVSKYRGEPPDIDVDFEHERREEVIQWIYQKYGRHRAGLCATVTHFRSRAAIRE 477

Query: 461 VGRALQMPYSQVDRLCKLI---PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
           VG+ + +       L   I    N    P  LQ +  +       L D  + + + +  +
Sbjct: 478 VGKVMGLSQDVTAGLSGQIWGMTNGGVDPERLQELGLN-------LEDRRLMQTIRLIGE 530

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
           + G  RH S H  G VI    L +L P+      D  V +++   I+  G++K D LGL 
Sbjct: 531 IIGFPRHLSQHVGGFVITRGRLDELSPIENAAMEDRTVIEWDKDDIDALGILKVDVLGLG 590

Query: 578 TLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            L+ ++K+ D + Q  G  + ++ +P  D  TY +L     +G+FQ+ES      L  M+
Sbjct: 591 MLSCVRKAFDLMQQHEGETLSIATVPQGDEATYDMLCAADAVGVFQVESRAQMNFLPRMR 650

Query: 637 PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
           P    D++  V++ RPGPI  D +  Y  R++G EK     P ++ + + T GV ++QEQ
Sbjct: 651 PREFYDLVIEVAIVRPGPIQGDMVRPYIRRRHGLEKPEPFGPKLEKVTERTLGVPLFQEQ 710

Query: 695 VMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            MQIA + +G++  EAD LRR++   +    +   +++FISG  KNG    IA   F  +
Sbjct: 711 AMQIAVVGAGFTAEEADHLRRSLASFRRMGTIGTFEDKFISGMLKNGYEPEIAKRCFSQI 770

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             FADYGF +SHAAA+A+++Y +AW+K H+P  F  A +  +        +  +DAR+  
Sbjct: 771 EGFADYGFPESHAAAFAMLAYVSAWLKCHHPAIFACALLNSQPMGFYAPAQIVRDAREHG 830

Query: 814 IQIMPPSVNTPCVD 827
           ++I P  VN    D
Sbjct: 831 VEIRPVCVNASTWD 844


>gi|302518213|ref|ZP_07270555.1| LOW QUALITY PROTEIN: DNA polymerase subunit III, alpha [Streptomyces
            sp. SPB78]
 gi|302427108|gb|EFK98923.1| LOW QUALITY PROTEIN: DNA polymerase subunit III, alpha [Streptomyces
            sp. SPB78]
          Length = 895

 Score =  313 bits (801), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 214/732 (29%), Positives = 343/732 (46%), Gaps = 58/732 (7%)

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
            A  +G  A+ Y +R+  EL++I    F+ YFL VA  +   +   I V   RGSGAGS+ 
Sbjct: 76   ATTRGPKARAYWERMHHELDIIGHHDFASYFLTVARVVDDVRDLGIRVA-ARGSGAGSLV 134

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
             + + I   DPL   LL ERFL+  R  +PD DID    RR EV R +  ++G ERVA +
Sbjct: 135  NHLIGIAHADPLEHGLLMERFLSKRRSVLPDIDIDVESARRIEVYRAILGRFGPERVATV 194

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR---- 502
                + + + A+RDVG AL +  + +DR+    P+               R R+AR    
Sbjct: 195  AMPETYRVRHAIRDVGAALSLDPADIDRIATAFPH--------------IRARDARTAMD 240

Query: 503  ----LADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                LA  + +R       E+ + L+ L R  + H  G+++ D  L    P+       L
Sbjct: 241  ELPELASVAAEREKYGTFWELVEGLDALPRGVAMHPCGVLLSDASLLSRTPVVPTSGESL 300

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLL 612
            P+ QF+ + +E  GL+K D LG++  + +  +L  L +  G   D+  IP  D  TY L+
Sbjct: 301  PMAQFDKEDVEDLGLLKLDVLGVRMQSAMAHALSELDRATGEAPDIDAIPPGDERTYQLI 360

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEK 670
             +  TLG FQ+ES G R  +  +QP    D++  +SL+RPGP+  D +  +   ++G+  
Sbjct: 361  RSTETLGCFQIESPGQRDLVGRLQPSTFHDLVVDISLFRPGPVAADMVRPFIEARHGRAP 420

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +   HP + P L++T GV+++ EQV+ +   ++G    EAD +RR +     E   + + 
Sbjct: 421  VRYPHPDLAPALEDTYGVVVFHEQVIDLVHTMTGCGRDEADRVRRGLSD--PESQGRIRF 478

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F   A++ G         +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A 
Sbjct: 479  WFAQRAAERGYDAETVTRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAG 538

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK---VGDN-------RIYYSLA 840
             +T +     K +    DAR+  + I+P  VN      +   V +N        +   L+
Sbjct: 539  LLTHDPGMYPK-RLLLADARRRGVPILPVDVNHSAPAHRIELVSENGPPAARWGVRLGLS 597

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             + G+       I   +A +P+ SL DF  R    + +R V E L   GALD FG +R  
Sbjct: 598  DVHGMSEAEGERI---AAAQPYTSLLDFWQRA---RPSRPVAERLAQVGALDAFGANRRD 651

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL  L  + +  +    + T           G  +    L      + + R   E  VLG
Sbjct: 652  LLLHLAELHRMGRGAASHGTQ-----LPLSGGRRTAPAGLPDL---DETERLSAELGVLG 703

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
               S H +  ++  LR++G+           G  + +A    + Q    R G R+ + T 
Sbjct: 704  MDASRHLMGDHQEFLRELGVVSARRLREAPHGATVLVAGAKAATQTPPIRSGKRVVFTTL 763

Query: 1021 SEPAKEYEANFF 1032
             + A   +  FF
Sbjct: 764  DDGAGLVDLAFF 775


>gi|300779433|ref|ZP_07089291.1| DNA-directed DNA polymerase III alpha subunit [Chryseobacterium
           gleum ATCC 35910]
 gi|300504943|gb|EFK36083.1| DNA-directed DNA polymerase III alpha subunit [Chryseobacterium
           gleum ATCC 35910]
          Length = 1014

 Score =  313 bits (801), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 211/694 (30%), Positives = 354/694 (51%), Gaps = 48/694 (6%)

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F ++++Y  H +L A+ ++T++S+     V     Y ++   +  I+   PE +ENT ++
Sbjct: 157 FSTKKEYNLHRILRAIDNNTLLSKLAEKEVCRKSEYFRSVDSIHRIYRHYPEIIENTQKL 216

Query: 278 ARRCSFILQVHAPI-LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
             +CSF      P     +   + DD++      L   A AGLE R        G + + 
Sbjct: 217 LSKCSFDFVFSTPRNRKHYTGTKADDLKL-----LTRLAYAGLERRY-------GRNHEV 264

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
             +R++ EL VI  + FSGYFLI  D I+++      +  GRGSGA S+ AY L ITDI 
Sbjct: 265 ATKRIEKELKVIDELNFSGYFLITWDIIRYSNSMGF-MHVGRGSGANSIVAYCLGITDIC 323

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           P+   L FERFLN +R S PDFDID+    RD ++ Y+ N+YG E VA   T    + ++
Sbjct: 324 PIELDLYFERFLNLNRKSPPDFDIDWSWQERDIILDYIFNRYGKEYVAFCGTNVEFKYRS 383

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +R+VG+A  +P  ++D L                    S++ E    D  V ++ +  +
Sbjct: 384 IIREVGKAFGLPKEELDEL--------------------SKYPERVFRDDIVKQVQKYGK 423

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            LE      S H+ GI+I + PL+    +    +   P+ Q++M   E+ G  KFD L  
Sbjct: 424 LLEKFPNQRSMHSCGIIISEEPLTNFTALEMPPKG-FPIVQWDMHVAEEIGFEKFDILSQ 482

Query: 577 KTLTLLQKSLDFLAQ-RGVKVDL--SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
           + L  +  ++  L + RG+KV++  + I  D+ +    L+   T+G F +ES  MR  L 
Sbjct: 483 RGLGTINDTVRLLEEKRGIKVNIKDTTISKDEVKCNEYLSQGRTIGCFYIESPAMRGLLR 542

Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            ++ +  + ++A  S+ RPG   + ++  Y  R N  +K    HP+ +  L +T G+++Y
Sbjct: 543 RLKCNNYKVLVAASSIIRPGVAQSGMMHEYIFRHNNPDKFEYFHPVFEKQLGDTYGIMVY 602

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIK--EEMDKQKERFISGASKNGISKTIAVNI 749
           QE V++IA    G S ++ D+LRRAM  K +    + K K+ F +   K G  + ++  I
Sbjct: 603 QEDVIKIALHYGGVSAADGDILRRAMSGKGRSLSALQKVKDDFFASCRKQGHPEELSREI 662

Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
           +  +  FA Y F K+H+A+YAV SYQ+ ++K +YP+EF+ +++   M    + + +  +A
Sbjct: 663 YRQIESFAGYSFCKAHSASYAVESYQSLYLKVYYPLEFMVSAIN-NMGGFYRTEVYVHEA 721

Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI-MEASADKPFDSLEDF 868
           R     I+ P VN    +  +    IY  L  ++ V +  A+ I  E  A+  + S+EDF
Sbjct: 722 RMSGGVILNPCVNKSEYETTIYGEEIYLGLMLLEKVESKLAQLIPKERKANGEYRSMEDF 781

Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             RV    +    L++L+F GA    G  + +LL
Sbjct: 782 IKRV---PIGIETLQTLIFIGAFRFSGVPKNELL 812



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS +SL  G LS+++++ +  A     + +TD N +    EF +K     I+PI+G 
Sbjct: 3  LNCHSFHSLRYGTLSIDDLISQALALGIKELVLTDINTVTGVYEFKKKCEENNIRPIVGV 62

Query: 74 QL 75
          ++
Sbjct: 63 EV 64


>gi|85712559|ref|ZP_01043606.1| DNA polymerase III alpha subunit [Idiomarina baltica OS145]
 gi|85693550|gb|EAQ31501.1| DNA polymerase III alpha subunit [Idiomarina baltica OS145]
          Length = 1027

 Score =  313 bits (801), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 268/1030 (26%), Positives = 469/1030 (45%), Gaps = 106/1030 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+YS L  A   +  +D+       AIA+TD  ++   +   + A    I+ I
Sbjct: 3    YAELHCLSNYSFLRSASHPSEFVDRATELGYEAIAVTDECSVAGVVRAYEAARERPIKLI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSV 129
            +G +  +                P     V+L  T   Y  L E ++      ++G  +V
Sbjct: 63   VGSEFML----------------PGAGVFVVLCPTRSAYAGLCEKITLFRQRSEKGSYAV 106

Query: 130  RI----------CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++           L W  +  TEGL      + G                     K+ + 
Sbjct: 107  QLDDFLHGFDEALLLWWPQCDTEGLSYAKALNLGH------------------QLKRHWR 148

Query: 180  DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHS 237
            DRL++  +RH  + D+     V +L+   +LP+ A+N ++   E      D+L A  A+ 
Sbjct: 149  DRLWLLYERHYQHNDKALFRMVCRLSQQVKLPVTASNGAVMHDENRQPLLDILSATNANQ 208

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-----QVHAPIL 292
            ++V   +   +  +  L++   + + +      L  + +IA RC+F L     +  A ++
Sbjct: 209  SLVQHPEVCALNSERRLRDLKALQACYP--ANWLTESAKIADRCTFCLSELRYEYPAELV 266

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P+ +  +           LR+    G + R  +G        +    + + EL +IA   
Sbjct: 267  PKGMTAQ---------QYLRHLTEQGAQQRYPEGV------PESVVSQYEKELKLIAEQH 311

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            +  +FL + D +++A+   I    GRGS A SV  Y L IT ++P +F +LFERF++ +R
Sbjct: 312  YEYFFLTIYDLVEFAQSQGI-FYQGRGSAANSVVCYCLKITAVNPAQFDVLFERFISKER 370

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
               PD D+DF  +RR+EVI+Y+  KYG +R A   T    + K+A RDVG+AL     Q+
Sbjct: 371  DEPPDIDVDFEHERREEVIQYIYKKYGRKRAALAATVIRYRFKSAFRDVGKALGFSEQQL 430

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
                + +          + +A+      A +       LL ++++L G  RH S H  G 
Sbjct: 431  QTYRQNLDRRDKTQNWKEQLAEQY---PALVQSKRGQHLLSLTEQLMGFPRHLSQHVGGF 487

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
            VI    L+QLVP+      D  V Q++   +E   L+K D L L  LT L+KSL  L + 
Sbjct: 488  VIAANELTQLVPIENASMRDRTVIQWDKDDLEVLKLLKVDVLALGMLTALRKSLGLLKEK 547

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            R + + L+ IP +D   Y  L    ++G+FQ+ES      L  ++P+   D++  +++ R
Sbjct: 548  RNLTLGLADIPQEDPVVYRALQQGDSVGVFQIESRAQMNMLPRLKPNTFYDLVIQIAIVR 607

Query: 652  PGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGPI  D +  Y  R+ GKEK+      +  +L+ T GV I+QEQ +++A + +G+S  E
Sbjct: 608  PGPIQGDMVHPYLRRRAGKEKVDYPSDEVRQVLQRTLGVPIFQEQAIKLAMVAAGFSGGE 667

Query: 710  ADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD LRRAM   K   ++ + + + ISG    G S++ A  +F  +  F  YGF +SH+A+
Sbjct: 668  ADQLRRAMAAWKSTGKLQQFEHKLISGMRARGYSESFAQRLFHQICGFGQYGFPESHSAS 727

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +A ++Y +AW+K HYP  F    +           +  QDA++  ++ +P  VN    D+
Sbjct: 728  FANLAYASAWLKVHYPAAFFVGLLNSLPMGFYSPSQLIQDAKRHGVRFLPADVNYSQWDY 787

Query: 829  K-VGD--NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            + + D  N +   L  I G+  +    ++ + AD  F + E    ++    L+   +++L
Sbjct: 788  QWLADQGNCVRIGLRQIFGLSRSRTALLLNSRADALFANTE----QLRRGGLHESDIQAL 843

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              A AL      R Q           AQW   + +++   +F +E      +I+++    
Sbjct: 844  AKADALTSLSGHRYQ-----------AQWDALSLSDQQMPLF-NEVADNKSEISIKPSET 891

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYK--PILRKMGIKGYEESVATIR-GNNIRLAAMVV 1002
            E+    + +     G     HP+ + +  P + K       E++A  R G  I +  +V 
Sbjct: 892  EDIKADYAST----GLSLRRHPMALIRNHPEVTKSITA---ETLAGCRSGQVIEVIGLVT 944

Query: 1003 SKQQKKTRKG 1012
             +Q+  T+ G
Sbjct: 945  CRQRPGTKSG 954


>gi|170288275|ref|YP_001738513.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
 gi|170175778|gb|ACB08830.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
          Length = 842

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 208/630 (33%), Positives = 325/630 (51%), Gaps = 88/630 (13%)

Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
            ++Y  RL  EL VI R  F+ Y   V   ++ AKK  I VGPGRGS  GS+ AY   IT
Sbjct: 174 GEEYISRLKRELEVIKRKGFTPYIYTVEKVVEIAKKMGIKVGPGRGSAVGSLVAYLCGIT 233

Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
           ++DP+++ LLFERFLN +R   PD D+D    RR ++I+ +   +   +V Q+ TFG+L 
Sbjct: 234 EVDPIKYDLLFERFLNEERQEPPDIDVDVEDRRRKDLIKELSKSF---QVYQVSTFGNLT 290

Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
            K+                  L  LI                     + L D S++   E
Sbjct: 291 EKS------------------LKNLI--------------------NSVLPDASLEEKNE 312

Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
           I + + GL  H S HAAG+VI + PL    P+   +  D+P+T ++M  +++ G++K D 
Sbjct: 313 IYKTVYGLPHHPSVHAAGVVISENPL----PLPTRMEEDIPITDYDMYDLQEIGVVKIDI 368

Query: 574 LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
           LGLKTL+ ++   DF  +        +  + D +TYHL++   TLG+FQLE    R+   
Sbjct: 369 LGLKTLSFIK---DFKKE--------IFDYSDEKTYHLISKGKTLGVFQLEGLQARKLCR 417

Query: 634 GMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            + P  ++++  L++L RPGP+ +   V+++N KN  E      P       ET+GV+IY
Sbjct: 418 RISPRNMDELSILLALNRPGPLRSGLDVMFSNPKNVPEFFRKTFP-------ETRGVLIY 470

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QEQ+M++A + +G S +EAD+LRRA+ KK +E+M+   E+   G  + G+    A  I E
Sbjct: 471 QEQIMRLA-MFAGLSGTEADILRRAIAKKEREKMEPLLEKMKKGLLEKGMEN--AEQILE 527

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
           +L  F+ Y FNKSH+ AYA I+YQTA++K H+  EF          + EKI    Q+ R 
Sbjct: 528 ILLNFSSYAFNKSHSVAYAHITYQTAYLKVHHLEEFFKLYFAYNSSDTEKIFLAVQELRS 587

Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              ++ PP +NT   +       +Y  L  +KGVG T    I +    +P +S+ +   R
Sbjct: 588 EGYRVHPPDINTSGKELVFHGKDVYLPLTVVKGVGATLVEQIEKI---RPINSVRELQER 644

Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
           V    + R V+E+L+ AGA D    +R   L+ L+      + VEK+            +
Sbjct: 645 VTG--VPRNVVENLITAGAFDKLYENRKLALEELN------KKVEKD--------ILEIR 688

Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             F +K+  E  +V+   +  E E++ +GF
Sbjct: 689 SLFGEKVEQESSTVKIGDIT-ELEEKSMGF 717


>gi|124266725|ref|YP_001020729.1| DNA polymerase III subunit alpha [Methylibium petroleiphilum PM1]
 gi|124259500|gb|ABM94494.1| DNA polymerase III, alpha subunit [Methylibium petroleiphilum PM1]
          Length = 1099

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 293/1069 (27%), Positives = 485/1069 (45%), Gaps = 134/1069 (12%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA--- 65
            P++  L   S++S L GA     ++++ A     AIAITD  ++   +    +A AA   
Sbjct: 28   PAYAELHCRSNFSFLTGASHPQELVERAAQLGYAAIAITDECSVAGVV----RAHAALKR 83

Query: 66   ----GIQP----IIGCQLDIDMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIEL 115
                G  P    IIG +  +                PT P   +VLL    EGY ++  L
Sbjct: 84   LRENGNPPLPALIIGSEFTLAAS-------------PTAPGCRLVLLAKNREGYAQICGL 130

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF-------NSSQVAE 168
            ++    L +G+ +       + ++  + L+   G ++G  D            +++ +A+
Sbjct: 131  IT----LGRGRSAKGHYQLSVDDL--DALLAGQGHAAGVPDCLALLIPRRDEPHATLLAQ 184

Query: 169  KRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQL---AYTHELPLVATNNSLFLSEEDY 225
             R L  +   G+R  + ++  R  D   ES V +L   +    LPL A  + L       
Sbjct: 185  ARWLAGR--CGERASIAVELLRWADD--ESFVERLLDASAASGLPLAAAGDVLMHVRSRK 240

Query: 226  EAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
               D L A+     V+      +   + +L++R  +  +    PE L+ +V++AR C F 
Sbjct: 241  PLQDTLTAIRLKRRVADCGYALMRNAEQHLRSRLALAQLCR--PEWLQRSVDLARACDFS 298

Query: 285  LQVHAPILPRFIEKECDDIQKEEE---NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            L+       +   +  D+I    E   + LR     G  VR   G +     AQ     +
Sbjct: 299  LE-------QLKYEYPDEIVPAGETASSHLRRLTEEGACVRYP-GGVPGMVQAQ-----I 345

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + E  +I R ++  +FL V D +++A+   I +  GRGS A S   Y L IT++DP +  
Sbjct: 346  EHEFALIFRKRYEAFFLTVHDVVRFARSEGI-LCQGRGSAANSAVCYCLGITEVDPTQTP 404

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERF++ +R   PD D+DF  +RR+EVI+Y+  KYG  R A      + + + A+R+V
Sbjct: 405  LLFERFISEERGEAPDIDVDFEHERREEVIQYIYGKYGTHRTALAAALATYRVRGAVREV 464

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD--PSVDRLLEISQKLE 519
            G+AL +   ++DRL K      +H       A  +R  EA      P   + L +S  L 
Sbjct: 465  GKALGLDGQRIDRLAK------SHQWFDGHEALPARLVEAGFDPDAPVTRQWLALSAALI 518

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G  RH S H  G VI    LS+LVP+      D  V Q++   +E  GL+K D L L  L
Sbjct: 519  GFPRHLSQHVGGFVIARDALSRLVPIENAAMKDRRVIQWDKDDLESLGLLKVDVLALGML 578

Query: 580  TLLQKSLDFL---------AQRGVKVDLSL----IPFDDHETYHLLTTKGTLGIFQLESS 626
            + L+++L  +         A  G  +  S     IP DD  TY ++    T+G+FQ+ES 
Sbjct: 579  SALKRALALITDWRGPPPGANGGAPISPSWRMQDIPRDDIATYEMIQEADTVGVFQIESR 638

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIV---SIHPLIDPM 681
              +  L  ++P    D++  V++ RPGPI   +V  Y  +++ + + +     +P ++  
Sbjct: 639  AQQSMLPRLKPSEFYDLVVQVAIVRPGPISGGMVHPYLKQRDLQRRGLRPPPAYPALEQA 698

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNG 740
            L+ T GV I+QEQVMQI  + + +S  +AD LRRAM   K K  + +  +R +    +  
Sbjct: 699  LERTLGVPIFQEQVMQICMIAADFSGGDADELRRAMAAWKRKGGLQQFHQRIVGRMVEKN 758

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
              +  A  IF+ +  F +YGF +SHA ++A+++Y +AW+K H P  FLAA +  +     
Sbjct: 759  YDREFAERIFQQIKGFGEYGFPESHAYSFALLAYLSAWLKCHEPAIFLAALLNSQPMGFY 818

Query: 801  KIKKFCQDARQFNIQIMPPSV---------------NTPCVDFKVGDNRIYYSLAAIKGV 845
               +  QDAR+  +++ P  V               +TPC    +    +   L  + G 
Sbjct: 819  APSQLVQDARRHAVEVRPVDVGHSGWDCTLEPASPGSTPCAARSL-QPAVRLGLRLVSGF 877

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS 904
                A  I+ A A   F SL+D   R     L+ + L+ L  A AL    G+ R Q   +
Sbjct: 878  SEAAADRIVAARAVSTFASLDDLARRAG---LDPQALQVLARADALQSLAGHRRQQAWHA 934

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
                ++ A  +    T++ E+         +++ITL+  S + +  R             
Sbjct: 935  SGQPRRTA--LLAGATHR-EDPLVLPAPPEAEEITLDYASTQLTLRR------------- 978

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             HPL + +P L + G +   E  A   G  +    +VV +QQ +T KG+
Sbjct: 979  -HPLALLRPRLVQRGWRNARELGALKDGCRVWACGIVVGRQQPETAKGT 1026


>gi|134098900|ref|YP_001104561.1| DNA polymerase III alpha subunit (fragment) [Saccharopolyspora
            erythraea NRRL 2338]
 gi|291009107|ref|ZP_06567080.1| DNA polymerase III alpha subunit (fragment) [Saccharopolyspora
            erythraea NRRL 2338]
 gi|133911523|emb|CAM01636.1| DNA polymerase III alpha subunit (fragment) [Saccharopolyspora
            erythraea NRRL 2338]
          Length = 631

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 197/588 (33%), Positives = 308/588 (52%), Gaps = 31/588 (5%)

Query: 465  LQMPYSQV-DRLCKLIPND-PAHPVSLQAIADDSRFREARLA--------DPSVDRLLEI 514
            L  P  QV D+  K +P    A  + L  I D +  R +  A        D  + ++ + 
Sbjct: 3    LGQPGFQVADQFSKALPAPIAAKDIPLSGIVDPAHERYSEAAEVRSLIENDSQIGKIFDT 62

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++  EGL R+A  HA   +I   PL  ++P+++    ++ +T ++    E  GL+K D L
Sbjct: 63   ARGREGLIRNAGVHACAHIISREPLLDVLPLWKRDDGEI-ITGWDGPQCEAVGLLKIDIL 121

Query: 575  GLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL  +T +  ++  +    G +++   IP DD  TY +L    +LG+FQLE  GM+  L+
Sbjct: 122  GLVNMTTIDDTVRMVKTNHGDEIEPLDIPLDDPATYEMLGRGESLGVFQLEGGGMQSLLK 181

Query: 634  GMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQG 687
             M P    DI+A V+LYRPGP+D    + Y +RKNGK+ +  IHP +D  LK    ET G
Sbjct: 182  RMAPTRFGDIVACVALYRPGPMDVNAHLDYADRKNGKKPVGPIHPELDEPLKDILGETYG 241

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQ+M IAQ ++GY+L +AD+LRRAMGKK KE MD+Q  RF +G ++ G SK    
Sbjct: 242  LIVYQEQIMAIAQKVAGYTLGQADLLRRAMGKKKKEVMDEQFARFEAGMAERGYSKEAID 301

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++  +  FA Y FNKSHAAAY +++Y TA++K HYP E++AA +T    N +K   +  
Sbjct: 302  QLWATVLPFAGYAFNKSHAAAYGLVTYWTAYLKAHYPAEYMAALLTANAHNKDKTGVYLS 361

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLE 866
            + R+  I+++ P VN         + RI + L AI+ VG+     I++   DK  + S  
Sbjct: 362  ECRRMRIRVLQPDVNESVTQHTAVEGRIRFGLGAIRNVGSNVVESIVKTREDKGRYASFT 421

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF  +V+    N+RVLESL+ AGA D   ++RM L Q  +        ++++      ++
Sbjct: 422  DFLDKVEILACNKRVLESLIKAGAFDSLEHTRMALTQHHEAAVDAVIGLKRHEAMGQFDL 481

Query: 927  FAHEKGTFSDK----ITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILRKMGI 980
            F     T +      +   +F+ E    +     E+ +LG Y S HPLD  + +L     
Sbjct: 482  FGGGDDTAASNDASPLAHLQFTDEEWPRKQLLAYEREMLGLYVSAHPLDGAERLLAPYQD 541

Query: 981  KGYEESVATIR--GNN----IRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
                E V   R  G N     ++A M+   Q++  + G     VT  +
Sbjct: 542  TSIAELVGGEREPGGNGKDEAKIAGMISGVQRRLNKNGQPWAIVTLED 589


>gi|149377417|ref|ZP_01895161.1| DNA polymerase III, alpha subunit, putative [Marinobacter algicola
            DG893]
 gi|149358341|gb|EDM46819.1| DNA polymerase III, alpha subunit, putative [Marinobacter algicola
            DG893]
          Length = 1039

 Score =  312 bits (799), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 277/1045 (26%), Positives = 469/1045 (44%), Gaps = 114/1045 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L   S+++ L GA   + + ++       A+AITD  ++            + ++ 
Sbjct: 5    SYAELFCFSNFTFLTGASHPHELAERALELGYSALAITDACSVAGIPRAWAALRDSPVKL 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-----------R 118
            I G   +++       T          P  +LL  T +GY +L +L++           R
Sbjct: 65   ITGSWFELEDAPAEAAT----------PRFILLARTRKGYGQLCQLITTGRRQAEKGQYR 114

Query: 119  MYLLDQGKQSVRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            ++  D    S+  C+  WL                 P           +A    L  ++L
Sbjct: 115  LFFRDIETHSLNDCVCLWL-----------------PPSPTVVDADQALACGEWL--QRL 155

Query: 178  FGDRLYVNLQRHRGYDRYRESQVVQ---LAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            F   L++   R    +   E Q+ +   LA     P+ AT      S E     DVL  +
Sbjct: 156  FEPNLWIAAAR--TLESGEEQQLARARWLADHLRCPVAATGEVHMHSRERQPLQDVLTTL 213

Query: 235  AHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSF---ILQVHA 289
             + T +           + YL+    +  +F   PEA L  T+ IA +C+F    L+   
Sbjct: 214  RNHTNLENAGHCLFQNGERYLRPLPVLDRLF---PEAWLRETLVIAEQCTFEPGSLRYEY 270

Query: 290  P--ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
            P  ++P          Q   + E R         R   G         + ++ +  EL++
Sbjct: 271  PPDLVPGGTSPAAYLKQLTHDGERR---------RYPSGT------PSNVQRLIRKELSL 315

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I+ MK+  YFL + D + +A+   I +  GRGS A S   Y L IT+++P R  LLFERF
Sbjct: 316  ISEMKYEHYFLTIQDIVAFARSQGI-LCQGRGSAANSAVCYCLGITEVNPARVELLFERF 374

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            ++ DR   PD D+DF  +RR+EVI+Y+  +Y  ER A   T    + ++A+RDVG+AL  
Sbjct: 375  ISKDRGEPPDIDVDFEHERREEVIQYIYRRYSRERAALAATVIRYRPRSAIRDVGKALGF 434

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
              + V++L + I          Q I D    R  ++A    D+   +   L G  RH S 
Sbjct: 435  DPAMVEQLLEGIDWRDKASNWRQQILDKHLTRNPKVA----DQFFALVNTLLGFPRHLSQ 490

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            H  G VI   PL++LVP+     +D  V Q++ + +E  GL+K D L L  LT ++K+L+
Sbjct: 491  HVGGFVISAGPLAELVPVENAAMADRTVIQWDKEDLESLGLMKVDVLALGMLTAIRKALE 550

Query: 588  FLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             ++ ++G    +  IP +D  TY +L    ++G+FQ+ES      L  ++P+   D++  
Sbjct: 551  LISEEKGTPFTMQDIPLEDQATYAMLQKGDSIGVFQVESRAQINMLPRLKPEKYYDLVIE 610

Query: 647  VSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            V++ RPGPI  D +  Y  RK+G E +   +  +  +L+ T GV I+QEQV+++A + +G
Sbjct: 611  VAIVRPGPIQGDMVHPYLRRKHGLEPVDYPNDAVRNVLERTLGVPIFQEQVIKLAMVAAG 670

Query: 705  YSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            +S  EAD LRRAM   K   ++   +++ I+G  + G     A  ++  +  F  YGF +
Sbjct: 671  FSAGEADQLRRAMAAWKSHGDLTPFRDKLINGMLERGHDADFAERLYLQICGFGGYGFPE 730

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAA++A++ Y ++W+K HYP  F  A +  +        +  QDAR+ ++ ++PP+VN 
Sbjct: 731  SHAASFALLVYVSSWIKRHYPAAFYCALLNSQPMGFYSPSQLVQDARRHDVTVLPPNVNH 790

Query: 824  PCVDFKV-GDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
               +  +   NR +   L  I+G+  + A  +     ++P +             LN+R 
Sbjct: 791  SQWNHTLESPNRHLRLGLRLIQGLSASGAESLHN---NRPAEGYRSTAELRHLAGLNQRD 847

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH--ENIFAHEKGTFSDKI- 938
            +E L  A A+  F  +R Q    L   ++ A+   +     +  E+ F   + T    + 
Sbjct: 848  MELLAGANAMPAFTTNRHQAYWQLLEHEQPAELFAREAPAHYQPEHCFQLPEPTEGQNVL 907

Query: 939  ---TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
               T +  +++   +    EQ  L F  S   L   +P                  G  +
Sbjct: 908  ADYTSQGLTLQRHPLALLREQGHLKFCLSAEQLKNIQP------------------GRPV 949

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTF 1020
            ++A +V  +Q    R GS  G VTF
Sbjct: 950  QVAGLVTGRQ----RPGSASG-VTF 969


>gi|163738163|ref|ZP_02145579.1| DNA polymerase III, alpha subunit [Phaeobacter gallaeciensis BS107]
 gi|161388779|gb|EDQ13132.1| DNA polymerase III, alpha subunit [Phaeobacter gallaeciensis BS107]
          Length = 1127

 Score =  312 bits (799), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 277/1045 (26%), Positives = 465/1045 (44%), Gaps = 92/1045 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSALEFSQK 61
            +P +  L V ++++ L GA     ++ + A     A+AITD N+L      +SAL+  ++
Sbjct: 25   APDYAELCVTTNFTFLTGASHPEELIVRAAELGLSALAITDHNSLAGVVRAWSALKELKR 84

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP------------------SIVLLV 103
                 ++  I  Q  +D     ++ +    P PT P                    + L 
Sbjct: 85   DPQDALK--IRSQHQVDSSSRQEIGHTSALPKPTTPIFPKLIVGCRLILQNCAVDWIALP 142

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFF 161
                 Y+RL    +R+  L + +     CL + +++    +G+I++       + +    
Sbjct: 143  CDRSAYKRL----ARLLTLGKRRAEKGQCLLYAEDMIDACKGMILIA------LPKETLS 192

Query: 162  NSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
            N+    +K      + F + +++    R+ G D+   +   +LA T   P+VA  + L  
Sbjct: 193  NAVSDIQK----IGRQFPNHVFLGATPRYDGSDQAYLAACAKLAQTTCAPMVAVGDVLMH 248

Query: 221  SEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
                 +  DVL  +  +  +     R     +  LK  ++M  IF D P AL  T EIA 
Sbjct: 249  RANRRQLADVLTCMRENINIDDIGTRALPNAERRLKAGADMARIFRDHPAALRRTAEIAN 308

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
            RC+F L   +   P   E E +  Q    + L   A  GL+ R   G   +        +
Sbjct: 309  RCNFDLSELSYEYPHE-EAEGETPQ----DRLERLAREGLKRRYPDGPPDRAI------K 357

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
             ++ EL+ +  ++F  YFL V D +Q+A+   I +  GRGS A S+  Y L ITD+ P  
Sbjct: 358  LMEKELSAVKDLEFPAYFLTVHDIVQFARSKGI-LCQGRGSAANSILCYLLGITDVSPDM 416

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
             +++FERF++  R   PD D+DF  +RR+EVI+++  KYG  R     T    + +AA+R
Sbjct: 417  IAMVFERFVSKHRGEPPDIDVDFEHERREEVIQWIYQKYGRHRAGLCATVIHFRTRAAIR 476

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE--ARLADPSVDRLLEISQK 517
            +VG+ + +       L   I       V L+      R RE    L D  + + + +  +
Sbjct: 477  EVGKVMGLSQDVTAGLSGQIWGMSNGSVDLE------RIRELGLNLEDRRLMQTIRLIGE 530

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            + G  RH S H  G VI    L +L P+      +  V  ++   I+   ++K D L L 
Sbjct: 531  IIGFPRHLSQHVGGFVITSGRLDELAPIENAAMENRTVICWDKDDIDALRILKVDILALG 590

Query: 578  TLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT ++K+   + Q   +   ++ IP  D  TY +L     +G+FQ+ES      L  M+
Sbjct: 591  MLTCIRKAFALMQQHENITHSIATIPQKDEATYDMLCAADAVGVFQVESRAQMNFLPRMR 650

Query: 637  PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
            P    D++  V++ RPGPI  D +  Y  R+NG EK     P ++ + + T+GV ++QEQ
Sbjct: 651  PREFYDLVIEVAIVRPGPIQGDMVRPYIRRRNGLEKPDPFGPQLEQVTRRTKGVPLFQEQ 710

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
             +QIA + +G+S  EAD LRR++   +    + K +++FI+G  KN  S+ IA   F  +
Sbjct: 711  ALQIAVVGAGFSAEEADHLRRSLASFRRMGTISKYRDKFIAGMLKNKYSREIAERCFGQI 770

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FADYGF +SHAAA+A+++Y +AW+K H+P  F  A +  +        +  +D R   
Sbjct: 771  EGFADYGFPESHAAAFAMLAYVSAWLKCHHPAIFACALLNSQPMGFYAPAQIVRDVRDHG 830

Query: 814  IQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
            I++ P  VN    D  +     G   +      IKG        I+ A  +   D  E  
Sbjct: 831  IEVRPICVNQSQWDNSLERRPDGTLALRLGFRQIKGFKEDDTGWIIAARGNGYIDP-EHL 889

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              R     L    LE L  A A    G SR   L  + +I   A     N     E I  
Sbjct: 890  WLRAG---LAPAALERLAEADAFSSMGISRRDALWQVKSITTPAPLPLFNDQLDGEAI-- 944

Query: 929  HEKGTFSDKITLEKFSVEN-SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
            +E      ++ L +  VE+  S+R              HP+++ +P L  +      + +
Sbjct: 945  NEPNVMLPRMHLGEEVVEDYVSMRLS---------LRAHPMELLRPTLPGLTCN---DQL 992

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKG 1012
                   + +  +V+++Q+  T  G
Sbjct: 993  IKAPLQRVSVGGLVITRQRPGTASG 1017


>gi|83748142|ref|ZP_00945170.1| DNA polymerase III alpha subunit [Ralstonia solanacearum UW551]
 gi|207739146|ref|YP_002257539.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            IPO1609]
 gi|83725224|gb|EAP72374.1| DNA polymerase III alpha subunit [Ralstonia solanacearum UW551]
 gi|206592519|emb|CAQ59425.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            IPO1609]
          Length = 1081

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 285/1053 (27%), Positives = 467/1053 (44%), Gaps = 109/1053 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA   + ++ +  A    A+A+TD  ++   +     A  AG++
Sbjct: 18   PDYAELHCISNFTFLTGASHPHELVARAKALGYRALALTDECSVAGTVRAHVAAKEAGLK 77

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +          QG+        +VLL    +GY  L E +++  L    K  
Sbjct: 78   LIVGSRFTV-------RDAQGEPWL----RLVLLAQDIDGYGNLCECITQARLAAP-KGD 125

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL----LTFKKLFGDRLYV 184
             R+    L     +GL  L G    P   A          +RL    L  +++FGDRL +
Sbjct: 126  YRLLADDL-AAPADGLAHLRGM---PHCLAILLPDYDPDPQRLRAQALWCRQVFGDRLSM 181

Query: 185  NLQ---RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
             L+   RH   DR+R + V  ++   ++PLVAT +    S +    HDVL A+  S  ++
Sbjct: 182  ALELPLRH-ADDRHRGT-VAAVSEQADVPLVATGDVAMHSRQRKPLHDVLTAIRLSRPIA 239

Query: 242  QKDRPRV-TPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAPILPRFIEK 298
            +       + +  ++ R ++   +     A  L  +VE+A  C F L             
Sbjct: 240  ECGLELAPSAEQAMRTRMQLAFFYQGERGAPLLRRSVELASLCDFSL------------- 286

Query: 299  ECDDIQKEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              D+I+ E  +E           L  + +AG   R  +   AK       R ++  EL +
Sbjct: 287  --DEIEYEYPHEVVPEGLTPAAYLHAEVMAGTARRYGKAIPAK------VRAQIAEELAL 338

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            IA +++  +FL V D +++A+  +I +  GRGS A S   Y L IT++DP   + LF RF
Sbjct: 339  IAELRYEPFFLTVYDVVRFARSRDI-LCQGRGSAANSAVCYCLGITEVDPESGNTLFARF 397

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            L+  R   PD D+DF   RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL +
Sbjct: 398  LSRARNEPPDIDVDFEHQRREEVIQYIYGKYGLTRTALAAALITYRTRSALRDVGRALGI 457

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                ++++ K      A      A A  +  +      P V R   +  +L G  RH S 
Sbjct: 458  DLGVIEQVAKA----QAWWDGQHAFAQHAGQQGLDPESPLVQRWAGLVGQLRGFPRHLSQ 513

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            H  G VI    LS+LVP+      D  V Q++   +E   L+K D L L  LT ++++LD
Sbjct: 514  HVGGFVIAQGKLSRLVPIENAAMRDRRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLD 573

Query: 588  FL-------AQRGVKVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
             L       A+ G    L++  +P +D +TY +++   T+G+FQ+ES   +  L  ++P 
Sbjct: 574  MLDALPGRRARYGASDKLAMQHLPDEDRDTYDMISRAETIGVFQIESRAQQSMLPRLRPR 633

Query: 639  CIEDIIALVSLYRPGPIDNIVVY------NNRKNGKEKIVSI-HPLIDPMLKETQGVIIY 691
               D++  V++ RPGPI   +V+         +NG    V+   P +  +L+ T GV I+
Sbjct: 634  TYYDLVIQVAIVRPGPIQGGMVHPYLQRREAMRNGNSDCVTYPGPEVRAVLERTLGVPIF 693

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASK-NGISKTIAVNI 749
            QEQVM+IA    G++  EAD LRR M   K K  + + +ER +    +           +
Sbjct: 694  QEQVMEIAMKAGGFTADEADRLRRDMAAWKRKGNLTEHQERLMQEMVEVRHYDPAFVEAL 753

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
               +  FA+YGF +SHAA +A ++Y ++++K H P  F AA +  +        +  Q+A
Sbjct: 754  CRQMEGFAEYGFPESHAAGFAKLAYVSSYLKCHEPAAFFAALLNSQPMGFYSPSQLVQEA 813

Query: 810  RQFNIQIMPPSVNTPCVDFKV--------GDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
            R+  ++++P  V     D  +        G   I   L+ I+G+    A  I+ A A  P
Sbjct: 814  RRSRVRVLPADVTVSAWDSTLHERPHGAGGQPDIRLGLSRIRGMRPPAAERIVAARAQAP 873

Query: 862  FDSLEDFCSRVDSKKLNRR-VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            F S+ED   R     L+R  +         L   G+ R  L Q+L   +         + 
Sbjct: 874  FASVEDLAHRA---ALDRHDLSVLAAANALLPLAGHRRQALWQTLALQEPGQDHALLRQA 930

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
               E   A    +  +++  +  S              LG     HPL + +P L +M  
Sbjct: 931  RPVEAPLALLAPSLGEEVVADYGS--------------LGLSLQSHPLSLLRPRLERMRF 976

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
                       G   R   +V  +Q+  T KG+
Sbjct: 977  VTAATLAGYRNGQLARACGIVTVRQRPGTAKGT 1009


>gi|254385261|ref|ZP_05000592.1| DNA polymerase III alpha subunit [Streptomyces sp. Mg1]
 gi|194344137|gb|EDX25103.1| DNA polymerase III alpha subunit [Streptomyces sp. Mg1]
          Length = 1170

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 284/1071 (26%), Positives = 482/1071 (45%), Gaps = 89/1071 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL V S YS   GA    +++ +        +A+TD + +  A+ F++ A AAGI+P+ 
Sbjct: 24   VHLHVASGYSARYGASHPRDLVRRATERGIGTLALTDRDTVTGAVRFAKAATAAGIRPVF 83

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVP------------SIVLLVSTAEGYQRLIELVSRM 119
            G  + +      +    G T  P  P             + LL  +  G+ RL  LVS  
Sbjct: 84   GVDVAVAPHTPAR---PGSTIRPRTPVRGGAHVVEPPLRVTLLARSTAGWARLCRLVSDA 140

Query: 120  YLLDQGKQSVRICLSW--LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            +    G   V   +SW  L     E L++L G  S P  RA       +AE  +  ++++
Sbjct: 141  HADAAGALPV---VSWETLGRYADEDLVVLLGPVSEPA-RALSAGRPDLAEHLIAPWREM 196

Query: 178  FGDRLYVNLQ----RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
             G  L +          G    R  ++ + LA    +  V TN   +     +   DVL 
Sbjct: 197  AGANLRLETVCWGVPGTGPGSLRLAARTIGLADQLGVRAVLTNAVRYADPAQHRIADVLD 256

Query: 233  AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARR 280
            A     ++   DR R+   + +LK+ + M +    + EA           L  TV     
Sbjct: 257  A---GRLLRPIDRRRLDCGERWLKDPAAMQAAAERIAEASGADSGRAAALLAETVRAGEE 313

Query: 281  CSFILQVHAPI---LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
            C  +L   A +    PRF E E    +      +R      L  R   G  A+G   +D 
Sbjct: 314  C--VLDPVADLGLGTPRFPEPEVVGAEPGPGGAMRL-----LRQRCETGMFARGLD-RDR 365

Query: 338  R--QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            R  ++L++EL VI ++++  YFL VA  +   +   I V   RGSGAGS+  +AL +   
Sbjct: 366  RAVEQLEYELGVIGKLEYEAYFLAVAQVVADVRAMGIRVA-ARGSGAGSMVNHALFVATA 424

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            +PL   LLFERFL+  R S+PD D+D    RR EV   +  ++G +RVA      + +A+
Sbjct: 425  NPLDHDLLFERFLSERRSSLPDIDVDVESARRLEVYDRIIERFGTDRVAVTGMPETYRAR 484

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             ALRD G AL +    VDR+ K  P+  A  +   A+      ++      S   L E++
Sbjct: 485  HALRDTGLALGIAPQVVDRIAKSFPHIRACDIR-DALTTLPELKQLAAEAGSFGPLWELA 543

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + L+ L R  + H  G+++ +  L   +P+        P+ Q + + +E  GL+K D LG
Sbjct: 544  EGLDKLPRGIAMHPCGVILSNASLLDRLPVQPTPGGQYPMVQADKEDVEDLGLLKLDVLG 603

Query: 576  LKTLTLLQKSL-DFLAQRGVKVDL---SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            ++  + +  ++ +     G ++DL     +P  D   + L+    T+G+FQLES G +  
Sbjct: 604  VRMQSAMAHAVKEVRRTSGRQIDLDNPDHVPLGDPGAFDLIRKSDTIGMFQLESPGQQDL 663

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
            +  +QP  ++D+IA +SL+RPGP+      +Y   ++G       HP + P+L  T GV 
Sbjct: 664  VGRLQPRDVQDVIADISLFRPGPVKGGMPALYIAARHGAAPQYP-HPDLVPVLSSTYGVT 722

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            I+ EQ++ +  +L+G   + A+V RRA+     E + + +  F   A   G S+ +   +
Sbjct: 723  IWHEQIIDMFAVLTGCDRALAEVARRALAN--GERLPQVEAWFKGEAGGRGYSRAVLDEV 780

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD-NVEKIKKFCQD 808
            +E++  F  YGF ++HA A+AV + Q+AW+K H+P    A    LE D  +   +    D
Sbjct: 781  WEIIKGFGAYGFCRAHALAFAVPALQSAWLKAHHPAALYAG--LLEHDPGMWPPRVIVSD 838

Query: 809  ARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
            AR+ ++ ++   +N    D+++     G   +  S++++KG+   +   +   ++ +P++
Sbjct: 839  ARRHDVPVLNVDINRSAADYRIEQTEGGVWGVRLSMSSVKGI---SEDQVARITSGQPYN 895

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            SL+DF  R    +    + E L+  GALD      +R  LL     +  +     + R  
Sbjct: 896  SLQDFWQRA---RPALPIAERLIQIGALDPLRGPLTRRDLLLQAAELHAHT----RARPA 948

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
              +     E  T       E  S E  S   +    VL    S H +  +  +LR++G  
Sbjct: 949  DGQLPLGGELVTAEPSGLPEMTSREALSAEID----VLKIDVSRHLMTHHHRLLREIGAT 1004

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                  A   G  + +A +  S Q      G R+ +VT  + +   +  FF
Sbjct: 1005 DAAHLKAMYPGQRVLVAGVRASTQTPPIPSGKRVIFVTLEDGSGLVDIAFF 1055


>gi|86158037|ref|YP_464822.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-C]
 gi|123497627|sp|Q2IIA8|DNAE2_ANADE RecName: Full=Error-prone DNA polymerase
 gi|85774548|gb|ABC81385.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-C]
          Length = 1132

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 212/714 (29%), Positives = 347/714 (48%), Gaps = 60/714 (8%)

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
            G   +D  ++L  EL+++  + ++ YFL V D +++A+   I +  GRGS A S   Y L
Sbjct: 375  GEPPEDVARQLARELDLVESLGYASYFLTVWDVVRFARSRGI-LCQGRGSAANSAVCYVL 433

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             IT IDP+R  LLFERF++ +R   PD D+DF  +RR+EV++YV  +YG +R   +    
Sbjct: 434  GITSIDPVRMGLLFERFISAERGEPPDIDVDFEHERREEVLQYVYQRYGRDRAGMVCEVI 493

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DPAHPVSL-QAIADDSRFREARLAD 505
            + + K+ALRDVG+AL +   QVDRL KL+ +        P  L QA  D +     R+  
Sbjct: 494  TYRGKSALRDVGKALGLSLGQVDRLAKLVGSYEDLGQVGPELLAQAGLDAADSERVRMT- 552

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
                  L ++++L+G  RH S H  G VI  RPL + VP+         + Q++   + +
Sbjct: 553  ------LALARELQGFPRHLSIHVGGFVITRRPLCETVPIEPAAMPGRTIVQWDKDDLAE 606

Query: 566  AGLIKFDFLGLKTLT-LLQKSLDFLAQRGVKVD---------LSLIPFDDHETYHLLTTK 615
              L+K D LGL  LT L +        R              L+ IP +D E Y +L   
Sbjct: 607  LDLLKVDLLGLGMLTALSRALALLARHRPAPASPTPVPHPDALATIPAEDPEVYEMLGRA 666

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS 673
             ++G+FQ+ES         ++P    D++  V++ RPGPI   ++  Y  R++GKE++  
Sbjct: 667  DSIGVFQVESRAQMSLAPRLRPRNFYDLVISVAIIRPGPIQGGMIHPYLRRRDGKEQVRY 726

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERF 732
             +  ++P+L  T GV ++QEQ M++A + +G++  EAD LRR M  ++  E++   K R 
Sbjct: 727  PYAPLEPVLARTLGVPLFQEQAMRLAVIAAGFTPGEADELRRVMTHRRSHEKLAAMKARL 786

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            ++G ++ GIS   A  IF+ L  FA YGF +SHAA++A++ Y +AW+K ++P  F  A +
Sbjct: 787  VAGMAERGISGADAEEIFKQLLGFAGYGFPESHAASFALLVYASAWLKRYHPAAFACALL 846

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-----VGDNR---------IYYS 838
              +           +DA++  +++    V+  C  ++         R         +   
Sbjct: 847  NSQPMGFYAPHTLVEDAKRHGVEVR--GVDVGCSGWESSLEGAAPGRPAAPGEAAVLRVG 904

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L AI+G+       I+EA A  PF S+ +   R    +L+R  L  L  AGAL      R
Sbjct: 905  LHAIRGLPRAVGEAILEARAAGPFGSVAELVRRA---RLSRAWLVRLAEAGALGTLAPDR 961

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
                       + A W          ++FA       +    E  + +  S  F      
Sbjct: 962  -----------RGAVWRSLAVEADGGDLFAGLAPPEPEAALPEASAADEVSADFTTT--- 1007

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             G    GHP+ + +P L    I+   E         + +A +V+ +Q+ +T +G
Sbjct: 1008 -GLSVRGHPMALVRPGLGGDRIRTARELGRLPDRAPVEVAGLVIVRQRPETARG 1060



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 121/308 (39%), Gaps = 42/308 (13%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +  +P +  L+  S +S LEGA     ++ + A      +A+ D N L+  +    +A  
Sbjct: 1   MSHAPRYAELRCKSCFSFLEGASHPEELVGRAAELGLSGLALADVNGLYGIVRAHAEAKR 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD- 123
            G+  I+G +L +           G  P      +VLL    EGY  L  LV+R +  + 
Sbjct: 61  QGLPLIVGAELVV----------AGLAPGRPA-RLVLLAQDREGYAGLCRLVTRAHCGEG 109

Query: 124 -------QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
                  + + +V +    +   G  GL  L  G+ G                 +   K 
Sbjct: 110 WTGAPPRRERDAVAVPFEAVA-AGARGLFALYPGADG---------------DAVARLKD 153

Query: 177 LFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG R  + + RHR   +  R            +P+  TN+    +       DVL  V 
Sbjct: 154 AFGRRAALAVARHRVAGEEARVLAARSAGRRLGVPVAVTNDVHTHARARQVLQDVLTCVR 213

Query: 236 HSTVVSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ---VHAP 290
           H T V +  R R+ P  +  LK   E+  ++SD PE L    +IA +C F ++      P
Sbjct: 214 HGTTVDRAGR-RLFPNAERTLKGPEELARLWSDFPEGLAAAADIADQCRFRMEEIRGEHP 272

Query: 291 ILPRFIEK 298
           + P  +E+
Sbjct: 273 LPPVVVER 280


>gi|302533607|ref|ZP_07285949.1| bacterial DNA polymerase III alpha subunit [Streptomyces sp. C]
 gi|302442502|gb|EFL14318.1| bacterial DNA polymerase III alpha subunit [Streptomyces sp. C]
          Length = 800

 Score =  311 bits (797), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 231/777 (29%), Positives = 363/777 (46%), Gaps = 76/777 (9%)

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARRCSF-------ILQVH 288
           R + + +LK+ + M  +   + EA           L  T E A  CS        I  VH
Sbjct: 48  RDSGERWLKDPAAMTEVAERIAEAAGLRAADARRLLARTRETAEACSVDPEDDLGIGSVH 107

Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ-DYRQRLDFELNV 347
            P             +       R  A   L  R A G + +GY  +  Y  R++ EL+V
Sbjct: 108 FP-------------EARLVGAARRTAQRVLASRAAAGMVLRGYAGRRAYWDRMEEELDV 154

Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
           IA   ++ YFL VA  +   ++  I V   RGSGAGS+  + L I   DP+   LL ERF
Sbjct: 155 IAHHGYASYFLTVAQVVDDVRQMGIRVA-ARGSGAGSLVNHLLGIAHADPVERGLLMERF 213

Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
           L+  R  +PD DID    RR EV R +  ++G ERVA +    + + + A+RDVG AL M
Sbjct: 214 LSKRRRVLPDIDIDVESARRLEVYRRIIGRFGAERVATVAMPETYRVRHAVRDVGAALSM 273

Query: 468 PYSQVDRLCKLIPN-----DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             + VDRL K  P+       A    L  + +    RE R  +   +RL ++ + L+ L 
Sbjct: 274 DPAAVDRLAKAFPHIRARDARAALAELPELREVREGREGRAEE--HERLWDLVEALDALP 331

Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
           R  + H  G+++ D  L    P+        P++QF+   +E  GL+K D LG++  + +
Sbjct: 332 RGTAMHPCGVLLSDASLLARTPVVPTSGEGFPMSQFDKDDVEDLGLLKLDVLGVRMQSAM 391

Query: 583 QKSLDFLAQRGVKVDLSL-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
             ++  L +R   +DL L     +P  D  TY L+ +  TLG FQ+ES G R  +  +QP
Sbjct: 392 AHAVTEL-KRATGLDLDLDDPAQVPPGDGPTYELIRSAETLGCFQIESPGQRDLVGRLQP 450

Query: 638 DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
           D   D++  +SL+RPGP+  D +  +   ++G+  +   HP +   L+ET GV+++ EQ+
Sbjct: 451 DSFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRFPHPDLADALRETYGVVVFHEQI 510

Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           ++I  +++G    EAD +RR +     +   + K  F + A+  G +  +    +E++  
Sbjct: 511 IEIVHVMTGCGRDEADRVRRGLSD--PDSQGRIKAWFAATAAGRGYAPEVVARTWEIVEA 568

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
           F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+  + 
Sbjct: 569 FGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRGVP 627

Query: 816 IMPPSVNTPCVDFKV----------GDNR--IYYSLAAIKGVGTTTARHIMEASADKPFD 863
           ++P  VN       +          G  R  +  +L+ + G+    AR I    A +P+ 
Sbjct: 628 VLPLDVNRSAAAHHIELVSDGQEGRGPERWGLRLALSDVHGISKKEARRI---EAGQPYA 684

Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
           SL DF  R       R V E L   GALD FG +R  LL  L  +   AQ     R    
Sbjct: 685 SLRDFWDRAHP---GRPVAERLAQVGALDAFGANRRDLLLHLTELHG-AQRAVGTRGAAQ 740

Query: 924 ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
             +     G  +  + L   +    + R   E  VLG   S H ++ +   L  +G+
Sbjct: 741 LPLGG---GRSTAPVGLPDLT---DAERLSAELGVLGMGASRHLMNDHHAFLAGLGV 791


>gi|171059584|ref|YP_001791933.1| DNA polymerase III subunit alpha [Leptothrix cholodnii SP-6]
 gi|170777029|gb|ACB35168.1| DNA polymerase III, alpha subunit [Leptothrix cholodnii SP-6]
          Length = 1109

 Score =  311 bits (796), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 252/876 (28%), Positives = 396/876 (45%), Gaps = 112/876 (12%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC----- 63
           P +  L   S++S L GA     ++ + A     A+AITD  ++   +   + A      
Sbjct: 6   PDYAELHCRSNFSFLSGASHAEELISRAARLGYRALAITDECSVAGVVRAHEAARHPRGE 65

Query: 64  -----AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
                   ++ IIG +  +           G  P      ++LLV    GY +L  L++ 
Sbjct: 66  RAPDDPGLLRLIIGSEFTLS-----PAAASGTRPPHPGGRLLLLVRNRAGYGQLCTLIT- 119

Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
           +      K   R+         ++   +L       + R      + + + R L  +  F
Sbjct: 120 LARSRCAKGDYRLDADDFDPAPSDCWALL-------LPRREDDLPTLLTQARWLVAR--F 170

Query: 179 GDR--LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
           G+R  + + L +H   D  R +     +     PLVA  + L          D L A+ H
Sbjct: 171 GERARIAIELLQH-ADDNLRIAHARAASQASGAPLVAAGDVLMHVRSRKPLADTLTAIRH 229

Query: 237 STVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
              ++      +   + +L++R  +  I+   PE L  +V IA  C+F L          
Sbjct: 230 HLPLADCGHLLMRNAEQHLRSRLALAQIYR--PEWLAESVRIADACTFSL---------- 277

Query: 296 IEKECDDIQKEEENE-----------LRNKAVAGLEVRLAQGA----IAKGYHAQDYRQR 340
                D+++ E  +E           LR + +AG   R    +    I  G  AQ     
Sbjct: 278 -----DELRYEYPDEIVPAGHSASSYLRQETLAGAARRYPPHSHPDGIPPGVLAQ----- 327

Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
           ++ EL ++A M++  +FL V D ++ A++  I +  GRGS A S   Y L IT++DP + 
Sbjct: 328 IEHELALVAEMRYEAFFLTVHDIVRQARRLGI-LCQGRGSAANSAVCYCLGITEVDPTQT 386

Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
           +LLFERF++ +R   PD D+DF  +RR+E+I+Y+  KYG  R A      + + + ALRD
Sbjct: 387 TLLFERFISRERGEPPDIDVDFEHERREEIIQYIYAKYGRHRTALAAAVSTYRVRGALRD 446

Query: 461 VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD-------PSVDRLLE 513
           VGRA  +    +D + K          S Q         E RLA+       P   + LE
Sbjct: 447 VGRAFGLDELLIDAVAK----------SYQWFDGRGALSE-RLAEQGLDAESPVTQQWLE 495

Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
           ++  L G  RH S H+ G VI    LSQLVP+         + Q++   +E  GL+K D 
Sbjct: 496 LATTLMGFPRHLSQHSGGFVIARESLSQLVPIEPAAMDGRQIIQWDKDDLESLGLLKVDV 555

Query: 574 LGLKTLTLLQKSLDFL---------AQRGVKVDLS---------------LIPFDDHETY 609
           L L  LT+L+KSLD           A RG     S                IP DD  TY
Sbjct: 556 LALGMLTVLRKSLDLANAWHGRTAQAWRGGSGSFSHRAPQRPEREPWTLHHIPRDDPATY 615

Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNG 667
            ++    T+G+FQ+ES   +  L  ++PD   D++  V++ RPGPI   +V  Y  RK G
Sbjct: 616 AMIRKADTVGMFQIESRAQQSMLPRLRPDKFYDLVIEVAIVRPGPIQGGMVHPYLRRKQG 675

Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMD 726
           KE+  S +P +D  L  T GV I+QEQVMQ+  + +G+S  EAD LRRAM   + K  + 
Sbjct: 676 KERADSPYPALDAALARTLGVPIFQEQVMQVCMIAAGFSPGEADGLRRAMAAWRRKGGVH 735

Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              ER + G  + G  +  A  IF  +  F +YGF +SHA ++A++++ +AW+K H P  
Sbjct: 736 HFHERIVGGMVERGYERAFAEGIFRQIQGFGEYGFPESHAYSFAILAWFSAWLKCHEPAA 795

Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           FLAA +  +        +   DAR+  +++ P  V 
Sbjct: 796 FLAALLNSQPMGFYGPAQLVADARRHQVEVRPVDVT 831


>gi|331014284|gb|EGH94340.1| error-prone DNA polymerase [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 721

 Score =  311 bits (796), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 224/778 (28%), Positives = 368/778 (47%), Gaps = 84/778 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L   S++S   GA S   + D+       A+AITD   L   +   Q +   G+  I
Sbjct: 5   YAELHCLSNFSFQRGASSARELFDRALRHGYAALAITDECTLAGIVRAWQASKDTGLPLI 64

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-----------RM 119
           +G ++ ++                  P IVLLV    GYQ L  L++           R+
Sbjct: 65  VGSEMHLE----------------NGPKIVLLVENLTGYQALCTLITVARRRAKKGEYRL 108

Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            L D       +   WL +I  +    L  G+                       ++ F 
Sbjct: 109 LLEDFDHLPGGLLAIWLADIEGDAQACLAQGN---------------------WLRERFA 147

Query: 180 DRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
           +RL++ ++ HRG D   R + ++ LA +  +P VA+ +    +       D + A+ H T
Sbjct: 148 ERLWLGVELHRGADDEQRLADLLALAQSLAIPAVASGDVHMHARGRRALQDTITAIRHHT 207

Query: 239 VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI---LQVHAP--IL 292
            V++         + +L++   +   + D    L  ++ IARRC+F    LQ   P  ++
Sbjct: 208 TVAEAGHLLFANGERHLRSLDALAEHYPDW--LLAESLRIARRCTFTFDQLQYEYPHELV 265

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           P+  +     +++  E  +R +   GL V                R +++ EL +I   K
Sbjct: 266 PKG-QTSTSWLRELTERGIRRRWPRGLSVAA--------------RAQVEKELALITEKK 310

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           F  YFL V D +++A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R
Sbjct: 311 FDSYFLTVHDIVEFARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISKER 369

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
              PD D+DF  DRR+EVI+Y+  +YG  R A      +     ALRDV + L +P  Q+
Sbjct: 370 DEPPDIDVDFEHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGALRDVAKVLGLPPDQI 429

Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAA 530
           + L        A      A+    R RE       P + R+L ++ +L G  RH S H  
Sbjct: 430 NALAD------AFSRWSDALPSAERLREYGFDAETPILKRVLTLTGELIGFPRHLSQHPG 483

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           G VI + PL  LVP+     ++  + Q++   ++  GL+K D L L  L+ L+++ D + 
Sbjct: 484 GFVISEHPLDTLVPVENAAMAERTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVH 543

Query: 591 -QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
             RG +  L+ +P DD  TY +++   T+G+FQ+ES      L  ++P+   D++  V++
Sbjct: 544 LHRGKQWTLASLPGDDRPTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAI 603

Query: 650 YRPGPIDNIVVYNN-RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGPI   +V+   R+  KE+ ++  P +  + + T GV ++QEQVM++A + + Y+  
Sbjct: 604 VRPGPIQGDMVHPYLRRRNKEEAITYPPKLKSVFERTLGVPLFQEQVMEVAIIAADYTPG 663

Query: 709 EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
           EAD LRRAM   K    +D  +ER  +G   NG     A  IFE +  F  YGF +SH
Sbjct: 664 EADQLRRAMAAWKRHGGLDPHRERLRTGMLANGYEADFADRIFEQIKGFGSYGFPESH 721


>gi|254465509|ref|ZP_05078920.1| DNA polymerase III, alpha subunit subfamily, putative
           [Rhodobacterales bacterium Y4I]
 gi|206686417|gb|EDZ46899.1| DNA polymerase III, alpha subunit subfamily, putative
           [Rhodobacterales bacterium Y4I]
          Length = 1127

 Score =  311 bits (796), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 244/860 (28%), Positives = 405/860 (47%), Gaps = 67/860 (7%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FS 54
           LT  +++   +  L V ++++ L GA     ++ + A     AIAITD N+L      +S
Sbjct: 19  LTTRMQRQ-DYAELCVTTNFTFLTGASHPEELVVRAAELGLSAIAITDYNSLAGVVRAWS 77

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFP---TVPSIVL---------- 101
           AL+  ++    G+Q  I  Q  +D     ++ +  +   P    +P +++          
Sbjct: 78  ALKQLKRETQDGVQ--IRSQYRLDSSSRQEIGHSHRIAKPDSVMLPKLIVGCRLVVQDSS 135

Query: 102 -----LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
                L      Y+RL    +R+  L + +     C+ + +++    L +  G +   + 
Sbjct: 136 VDWITLPRDRAAYKRL----TRLLTLGKRRADKGQCILYAKDM----LPVCKGMTLIALP 187

Query: 157 RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATN 215
           R     S       +   ++ F   +++    R+ G D+   S   ++A+    P+VA  
Sbjct: 188 RGRLDESV----PDIQALRRHFPGHVFLGAAPRYDGSDQAYLSACAEIAHRTSAPMVAVG 243

Query: 216 NSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
           + L       +  DVL  +  H T+     R     +  LK  ++M  +F + P AL  T
Sbjct: 244 DVLMHRASRRQLADVLTCMREHITIDQIGTRALPNSERRLKPGADMARLFRNHPAALRRT 303

Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
           +EIA +CSF L   +   P       D   +  +  L   A  GL+ R   GA  +    
Sbjct: 304 LEIADKCSFDLGELSYEYP-----HEDTADETPQMRLERLAHEGLKHRYPDGAPDRAL-- 356

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
               Q +  EL+V+  + F  YFL V D +Q+AK   I +  GRGS A S+  Y L ITD
Sbjct: 357 ----QLMAKELDVVRELNFPAYFLTVHDIVQFAKSQGI-LCQGRGSAANSILCYLLGITD 411

Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           + P   +++FERF++  R   PD D+DF  +RR+EVI+++  KYG  R     T    + 
Sbjct: 412 VSPDMIAMVFERFVSKHRGEPPDIDVDFEHERREEVIQWIYRKYGRHRAGLCATVIHFRT 471

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
           +AA+R+VG+ + +       L   I       V L       R RE  L DP   RL++ 
Sbjct: 472 RAAIREVGKVMGLSQDVTAGLSSQIWGMTNGGVDL------DRVRELGL-DPKDRRLMQT 524

Query: 515 SQ---KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            +   ++ G  RH S H  G VI    L +L P+      D  V  ++   I+  G++K 
Sbjct: 525 IRLIGEIIGFPRHLSQHVGGFVITRGRLDELAPIENASMEDRTVICWDKDDIDALGILKV 584

Query: 572 DFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
           D LGL  L+ ++K+   + +   +   ++ +P  D  TY +L     +G+FQ+ES     
Sbjct: 585 DVLGLGMLSCIRKAFALMQSHENITHSIASVPQGDKATYDMLCRADAIGVFQVESRAQMN 644

Query: 631 ALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            L  M+P    D++  V++ RPGPI  D +  Y  R+NG+E I    P +  + + T GV
Sbjct: 645 FLPRMRPREFYDLVIEVAIVRPGPIQGDMVQPYIRRRNGQENIEPFGPALQEVTRRTLGV 704

Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAV 747
            ++QEQ MQIA + +G+S  EAD LRR++   +    + K +++FI+G  KNG S  +A 
Sbjct: 705 PLFQEQAMQIAVVGAGFSAEEADHLRRSLASFRRMGTIGKYRDKFIAGMLKNGYSPDVAE 764

Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             F  +  FADYGF +SHAAA+A+++Y +AW+K H+P  F  A +  +        +  +
Sbjct: 765 RCFGQIEGFADYGFPESHAAAFAMLAYVSAWLKCHHPAIFGCALLNSQPMGFYAPAQIVR 824

Query: 808 DARQFNIQIMPPSVNTPCVD 827
           D R+  ++  P  VN    D
Sbjct: 825 DVREHGVETRPVCVNKSTWD 844


>gi|19548818|gb|AAL90806.1| polymerase III subunit alpha [Escherichia coli]
          Length = 324

 Score =  310 bits (795), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 155/324 (47%), Positives = 224/324 (69%), Gaps = 13/324 (4%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
           +TLT++  +L+ + +R  K     +D++ IP DD +++ +L    T  +FQLES GM+  
Sbjct: 180 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 239

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKE 684
           ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E+I        H  + P+L+ 
Sbjct: 240 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 299

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLS 708
           T G+I+YQEQVMQIAQ+LSGY+L 
Sbjct: 300 TYGIILYQEQVMQIAQVLSGYTLG 323


>gi|116254421|ref|YP_770259.1| DNA polymerase III alpha subunit [Rhizobium leguminosarum bv. viciae
            3841]
 gi|115259069|emb|CAK10180.1| putative DNA polymerase I alpha subunit [Rhizobium leguminosarum bv.
            viciae 3841]
          Length = 1154

 Score =  310 bits (794), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 276/1062 (25%), Positives = 480/1062 (45%), Gaps = 91/1062 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++  P+F  +   +++S LEGA     ++ + A  +   + I D N++   +     A A
Sbjct: 1    MKSEPAFFEIGTRTNFSFLEGASGPEEMVVQAAHLRLGGLGIADRNSVAGVVR--AHAQA 58

Query: 65   AGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRL 112
              ++     + +I  Q           D +++    +  F    P I+       G+  L
Sbjct: 59   EQLEERYKNRDEIMAQAKKEGKEAEILDPIRIQPGARLVFSDGTPDILAYPCNRRGWANL 118

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++   L ++  K S  +  + L + G E ++ L    +    +A         E+  
Sbjct: 119  CRLLTAGNLKEEAVKGSCILTEAELMKWGDEMMLALVPDRTLAGHQAGQSTLEDYLERFR 178

Query: 172  LTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              F+K F    Y+ L   + G DR   + +  LA  + +PL+ATN  L+   E     DV
Sbjct: 179  RRFRKAF----YMALAPAYDGRDRQVFAVLAMLAARNRVPLIATNQPLYHHPERRPLSDV 234

Query: 231  LMAVAHSTVVSQKD---RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            ++A+     ++Q      P    + YLK+  EM  IF D P A+ENT     R  F L+ 
Sbjct: 235  VIAIREHVQIAQAGFLLAP--NAERYLKDSREMTRIFRDYPNAVENTQVFFDRLIFSLKE 292

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                 P     E D  +  +E  L     AG   R  +G   K        Q++D+EL++
Sbjct: 293  LEHNYP----PENDPGETPQET-LERLTRAGAARRYPEGIPPK------VAQQIDYELDL 341

Query: 348  IARMKFSGYFLIVADFIQWAK-KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            I + K++ YFL V   IQ A+ K NI +  GRGS A SV  Y L IT++DP + +LLF+R
Sbjct: 342  IKKKKYASYFLTVHRIIQHARYKLNI-LCQGRGSAANSVICYCLEITEVDPEKSTLLFDR 400

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            F++ DR   PD D+DF  DRR+EVI+++   Y  E         + + ++A R+V +A  
Sbjct: 401  FISMDRDEPPDIDVDFEHDRREEVIQFIYENYKREHAGLTAGVTTYRTRSAGREVSKAFG 460

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
            +       +  L+       +S +    D++     + DP    +L+ + +L G  RH +
Sbjct: 461  LSEDVQSAISSLVWGWSEDNLSER----DAKAAGLDIKDPVTRNVLQYASELLGFPRHLT 516

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             H  G VI    L ++VP+ +    D  + +++   ++   ++K D L L  LT L+K+ 
Sbjct: 517  QHVGGFVITRDRLDEVVPIMKTAMPDRYMIEWDKDDLDNVKILKVDVLALGMLTCLRKAF 576

Query: 587  DFLA-QRGVKVDLSLIPFDDH-----ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
              L     VK  L+ +   +H       Y ++    TLG+FQ+ES      L  ++P   
Sbjct: 577  SLLELHYDVKKTLADLGNKEHGDEGEPVYEMMGRADTLGVFQIESRAQMSMLPRLKPKVF 636

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIH---PLIDPMLKETQGVIIYQEQV 695
             D++  V++ RPGPI  D +  Y  R+  + K + I    P +  +LK T GV ++QEQ 
Sbjct: 637  YDLVIEVAIVRPGPIQGDMVHPYLKRREQRAKNIPIEYPSPELKDVLKRTLGVPLFQEQA 696

Query: 696  MQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            MQIA   +G+  +EAD LRR+M   K    +D  K+RF+ G  +N  ++  A   F+ + 
Sbjct: 697  MQIAITAAGFKPAEADRLRRSMATFKRTGTIDNFKKRFVDGMIENNYAREFAEQCFKQIK 756

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F +YGF +SHAA++A++ Y ++W+K +YP  F AA +  +        +  +DAR+  +
Sbjct: 757  GFGEYGFPESHAASFALLVYASSWLKAYYPDIFCAAMLNSQPMGFYAPAQLVRDAREHGV 816

Query: 815  QIMPPSVNTP--------------CVDFKVGDNR--------IYYSLAAIKGVGTTTARH 852
            +I+P  +N                 VDF+  + R        +      IKG+ T     
Sbjct: 817  KILPVDINESNWDCDLEEAAFDRNAVDFRHHEMREIIKTRHAVRLGFRQIKGLSTDDMER 876

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD--NIQK 910
            +++   +  + S+ D   R     L + V+E L  A A      SR + L ++   +++ 
Sbjct: 877  LVDNRGEG-YSSVRDLWLR---SGLQKSVIERLADADAFQSLKLSRREALWAVRALDVKS 932

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
             A+ +      +H ++ A       + +  E+            + R L      HP+  
Sbjct: 933  AAEELPLFEQVRHVDLQAEPVAKLPEMLPGEQVI---------EDYRYLSLSLKAHPVSF 983

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             +  LRK G+    + +    G  + +A +V+ +Q+  + KG
Sbjct: 984  LREELRKAGVTRSVDLLKVANGQRVTIAGLVLVRQRPGSAKG 1025


>gi|217970361|ref|YP_002355595.1| DNA polymerase III subunit alpha [Thauera sp. MZ1T]
 gi|217507688|gb|ACK54699.1| DNA polymerase III, alpha subunit [Thauera sp. MZ1T]
          Length = 1075

 Score =  310 bits (794), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 264/928 (28%), Positives = 432/928 (46%), Gaps = 99/928 (10%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA--- 65
           P++  L   S++S   GA     ++ + AA    AIA+TD  + F+ +  + +A  A   
Sbjct: 3   PAYAELHCLSNFSFQRGASHPEELVAQAAAFGYSAIALTDECS-FAGVVRAHRALQALPE 61

Query: 66  GIQP--IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-L 122
             +P  I+GC+L   + D               P +VLL +   GY RL  L+++     
Sbjct: 62  AGRPRLIVGCELR--LADG--------------PCLVLLAADRAGYGRLSRLLTQARRSA 105

Query: 123 DQGKQSVRICL---SWLQEIGTEGL-----IMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           D+G+  +   +   +   E   E L     +++      P   A     +  +E R L  
Sbjct: 106 DKGRYHLTRAMLDATRADEAAAEALPGCLALLIPPEEFPPPGAAGDAAVALRSEARWLA- 164

Query: 175 KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
           K+  G     +  R  G D  R   ++++A    +P VA   +L          DV+ A+
Sbjct: 165 KRFPGRSWIAHTPRLDGRDPARLHWILRIAQATGVPAVAAGGALMHEAARRPLADVMSAL 224

Query: 235 AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                V++     + P+  L+            PE L  TV +A RC F L         
Sbjct: 225 RLHCSVAEAGLA-LAPNAELRLHERATLARRHPPELLAETVAVAARCRFDL--------- 274

Query: 295 FIEKECDDIQKEEENEL--RNKAVAGLEVRLAQGAIAKGY-------------------- 332
                 D+++ E   EL   ++       RL +G +A  Y                    
Sbjct: 275 ------DELRYEYPAELVPADETPTRWLRRLVEGGLAWRYGKAGKERRAAAPATIAAAPP 328

Query: 333 -----HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                     R +++ EL +IA + +  YFL V D +++A++  I +  GRGS A SV  
Sbjct: 329 PAEDPAPPTVRAQIEHELALIAELGYEPYFLTVHDIVRFARERGI-LCQGRGSAANSVVC 387

Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
           +AL IT++DP    +L ERF++ +R   PD D+DF  +RR+EVI+Y+  KYG ER A   
Sbjct: 388 WALGITEVDPQLGIMLVERFISRERDEPPDIDVDFEHERREEVIQYLYRKYGRERAALAA 447

Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--AD 505
           T    +A++ALRDVGRAL +  +Q++RL +       H    + I  + R  EA L  A 
Sbjct: 448 TVIRYRARSALRDVGRALGLDETQIERLTR-----EHHWFDGRHILPE-RLAEAGLDPAS 501

Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
           P   RL+ ++++L G  RH S H  G VI    L +LVP+     SD  V Q++   ++ 
Sbjct: 502 PVTQRLVALTEELIGFPRHLSQHVGGFVIARGRLDELVPVENAAMSDRTVIQWDKDDLDA 561

Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            GL+K D L L  L+ L++ L  + A RG  + L+ IP +  E Y +L+   ++G+FQ+E
Sbjct: 562 VGLMKIDVLALGMLSALRRGLALVSAWRGEALTLATIPRERKEVYEMLSRADSVGVFQVE 621

Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY------NNRKNGKEKIVSIHPLI 678
           S      L  ++P    D++  V++ RPGPI   +V+           G++ +  +   I
Sbjct: 622 SRAQMTMLPRLRPQRFYDLVVEVAIVRPGPIQGGMVHPYLQARERAARGEDPLDGLREEI 681

Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGAS 737
             +L  T GV I+QEQVMQ+A + + ++  EAD LRRAMG  + K E+++ +++ + G +
Sbjct: 682 RGVLARTLGVPIFQEQVMQLAVVAADFTGGEADQLRRAMGAWRRKGELERYRQKLLDGLA 741

Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            NG     A  + + +  F  YGF +SHAA++A++ Y +AW+K   P  FLAA +  +  
Sbjct: 742 NNGYDPDFAQRLCQQIEGFGSYGFPESHAASFALLVYASAWLKCFAPAAFLAALLNSQPM 801

Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVD--FKVGDN---RIYYSLAAIKGVGTTTARH 852
                 +  QDAR+  +++    V     D   +  D     +   L  I+G+G   A  
Sbjct: 802 GFYAPAQLIQDARRHGVEVRAADVGASAWDCMLETADGAQPAVRLGLRMIRGLGREAATR 861

Query: 853 IMEASADKPFDSLEDFC--SRVDSKKLN 878
           I  A  +  F    D    +R+D+ +L 
Sbjct: 862 IAAARGEHAFADTRDLAARARLDTGELR 889


>gi|3930523|gb|AAC80434.1| DNA polymerase III [Thermotoga maritima]
          Length = 842

 Score =  310 bits (794), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 196/575 (34%), Positives = 299/575 (52%), Gaps = 73/575 (12%)

Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
            ++Y  RL  EL VI R  F+ Y   V   ++ AKK  I VGPGRGS  GS+ AY   IT
Sbjct: 174 GEEYISRLKRELEVIKRKGFTPYIYTVEKVVEIAKKMGIKVGPGRGSAVGSLVAYLCGIT 233

Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
           ++DP+++ LLFERFLN +R   PD D+D    RR ++I+ +   +   +V Q+ TFG+L 
Sbjct: 234 EVDPIKYDLLFERFLNEERQEPPDIDVDVEDRRRKDLIKELSKSF---QVYQVSTFGNLT 290

Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
            K+                  L  LI                     + L D S++   E
Sbjct: 291 EKS------------------LKNLI--------------------NSVLPDASLEEKNE 312

Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
           I + + GL  H S HAAG+VI + PL    P+      D+P+T ++M  +++ G++K D 
Sbjct: 313 IYKTVYGLPHHPSVHAAGVVISENPL----PLPTRTEEDIPITDYDMYDLQEIGVVKIDI 368

Query: 574 LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
           LGLKTL+ ++   DF  +        +  + D +TYHL++   TLG+FQLE    R+   
Sbjct: 369 LGLKTLSFMK---DFKKE--------IFDYSDEKTYHLISKGKTLGVFQLEGLQARKLCR 417

Query: 634 GMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            + P  ++++  L++L RPGP+ +   V+++N KN       +      M  ET+GV+IY
Sbjct: 418 RISPRNMDELSILLALNRPGPLRSGLDVMFSNSKN-------VPAFFRKMFPETRGVLIY 470

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QEQ+M++A + +G S +EAD+LRRA+ KK +E+M+   E+   G  + G+    A  I E
Sbjct: 471 QEQIMRLA-MFAGLSGTEADILRRAIAKKEREKMEPLLEKMKKGLLEKGMEN--AEQILE 527

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
           +L  F+ Y FNKSH+ AYA I+YQTA++K H+  EF          +  KI    Q+ R 
Sbjct: 528 ILLNFSSYAFNKSHSVAYAHITYQTAYLKAHHLEEFFKLYFAYNSSDAGKIFLAVQELRN 587

Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              ++ PP +N    D       +Y  L  +KGVG T    I +    +P  S+ +   R
Sbjct: 588 EGYRVHPPDINISGKDLVFHGKDVYLPLTVVKGVGVTLVEQIEKI---RPVSSVRELQER 644

Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
           V    + R V+ESL+ AGA D    +R   L+ L+
Sbjct: 645 VTG--VPRNVVESLITAGAFDKLYENRKLALEELN 677


>gi|114798985|ref|YP_761161.1| putative DNA polymerase III subunit alpha [Hyphomonas neptunium ATCC
            15444]
 gi|114739159|gb|ABI77284.1| putative DNA polymerase III, alpha subunit [Hyphomonas neptunium ATCC
            15444]
          Length = 1087

 Score =  310 bits (794), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 280/1023 (27%), Positives = 455/1023 (44%), Gaps = 75/1023 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  L V +++S L+GA   + ++ + A     AI I D N L   +     A  AG++ 
Sbjct: 3    AYAELAVTTNFSFLQGASHAHELVRRAADLGHVAIGIADRNTLAGVVRAHVAAKEAGLRL 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G +L         +   G       P I+        Y RL  L+S+  +    K   
Sbjct: 63   LVGARL---------VPADG-------PEIIAYPMNRAAYGRLSRLLSKGKM-RAAKGEC 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
             I +S + +  +EG I +      P      F       + L    +    R Y+  +  
Sbjct: 106  HITVSDILK-ASEGQIFIV---MPPEALCLPFG------RTLDEIARAAPGRTYLAARYT 155

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPR 247
            + G +R R  ++ +LA    + L+ATN+ L+ + E     DVL  +  H T+ +      
Sbjct: 156  YSGRNRERIFRLAELAARAGVALMATNDVLYHAPERRPLQDVLTCIREHHTLDTAGFLLE 215

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + +LK  +EM  +F     ++  TVEI+ RC F L   A   P          Q+  
Sbjct: 216  ANGERHLKGGAEMARLFKGFESSVARTVEISERCRFSLDELAYEYPDEPVPPGSTPQEHL 275

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E          L    A G    G   +  RQ  D EL +I ++ ++ YFL V D +QWA
Sbjct: 276  ER---------LTWEGASGRYPGGVPEKVERQIRD-ELRIIDQLSYAPYFLTVNDIVQWA 325

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  NI +  GRGS A S   Y L IT IDP    LLF RFL+P+R   PD D+DF  +RR
Sbjct: 326  RSQNI-LCQGRGSAANSAICYCLGITSIDPTLTKLLFARFLSPERKEPPDIDVDFEHERR 384

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+YV  +YG  R A   T  S ++++A+R+V +AL +     D +   + N      
Sbjct: 385  EEVIQYVYRRYGQHRAALTATVISYRSRSAIREVCKALGL----SDDISAALANGVWG-- 438

Query: 488  SLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            S      D+R  EA L  A+P + R ++++++L G  RH S H  G V+    L + VP+
Sbjct: 439  SWSDTLPDNRIAEAGLDPANPLIRRAVQLARQLLGFPRHLSQHVGGFVLTRGDLIETVPI 498

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
                  D    +++   I+  G++K D L L  LT ++K+ D L + +     L+ +  +
Sbjct: 499  GNAAMRDRTFIEWDKDDIDALGIMKVDVLSLGMLTCIRKAFDLLTEHKNTLHTLASVEQE 558

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
            D  TY +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI   +V  Y 
Sbjct: 559  DRATYDMLCKGDSIGVFQVESRAQMAMLPRLRPRTYYDLVIEVAIVRPGPIQGNMVHPYL 618

Query: 663  NRKNGKEKIVSIHPLID--------PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
             R+ G E +    P  D         +L  T GV ++QEQ MQIA   + +S  EA+ LR
Sbjct: 619  RRRKGIEAVSYPRPSPDQGPPDELESILSRTLGVPLFQEQAMQIAIDAARFSADEANGLR 678

Query: 715  RAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RAM   +    + + +E  +S   K G     A + F+ +  F +YGF +SHAA++A++ 
Sbjct: 679  RAMATFRNVGTIHQYEEMLVSNLIKRGYDPVFAKSCFDQIKGFGEYGFPESHAASFALLV 738

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GD 832
            Y ++W+K H+P  F AA +  +        +  +DA+   +++ P  VN    D  +  D
Sbjct: 739  YVSSWIKCHHPDVFCAALLNSQPMGFYAPAQIVRDAQAHGVEVRPVDVNYSDWDNILEPD 798

Query: 833  NRIYYSLAAIKGVGTTTA--RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             R   S A   G        R  ME    +     E     +   +L R VLE L    A
Sbjct: 799  ERASGSFAVRLGFRQVDGLNREDMERLMVRRGTGYETPDRLMQHAQLTRSVLERL---AA 855

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQW-VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
             D FG        S+   ++ A W V      +   +FA    +     T     V   S
Sbjct: 856  ADAFG--------SMSLTRREALWKVRGEAPQQTLPLFATAGLSEQGSETGITLPVIPPS 907

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 + +  G    GHP+   + +  + G+    ++     G  ++ + +V+ +Q+  T
Sbjct: 908  EHVIQDYQTTGLSLKGHPMHFLRSLHARRGVLSTHDAARLPNGCRVQTSGIVLVRQRPGT 967

Query: 1010 RKG 1012
              G
Sbjct: 968  ASG 970


>gi|15643227|ref|NP_228271.1| DNA polymerase III, alpha subunit, putative [Thermotoga maritima
           MSB8]
 gi|7227889|sp|Q9ZHG4|DPO3A_THEMA RecName: Full=DNA polymerase III subunit alpha
 gi|4980970|gb|AAD35546.1|AE001724_4 DNA polymerase III, alpha subunit, putative [Thermotoga maritima
           MSB8]
          Length = 842

 Score =  310 bits (794), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 196/575 (34%), Positives = 299/575 (52%), Gaps = 73/575 (12%)

Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
            ++Y  RL  EL VI R  F+ Y   V   ++ AKK  I VGPGRGS  GS+ AY   IT
Sbjct: 174 GEEYISRLKRELEVIKRKGFTPYIYTVEKVVEIAKKMGIKVGPGRGSAVGSLVAYLCGIT 233

Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
           ++DP+++ LLFERFLN +R   PD D+D    RR ++I+ +   +   +V Q+ TFG+L 
Sbjct: 234 EVDPIKYDLLFERFLNEERQEPPDIDVDVEDRRRKDLIKELSKSF---QVYQVSTFGNLT 290

Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
            K+                  L  LI                     + L D S++   E
Sbjct: 291 EKS------------------LKNLI--------------------NSVLPDASLEEKNE 312

Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
           I + + GL  H S HAAG+VI + PL    P+      D+P+T ++M  +++ G++K D 
Sbjct: 313 IYKTVYGLPHHPSVHAAGVVISENPL----PLPTRTEEDIPITDYDMYDLQEIGVVKIDI 368

Query: 574 LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
           LGLKTL+ ++   DF  +        +  + D +TYHL++   TLG+FQLE    R+   
Sbjct: 369 LGLKTLSFIK---DFKKE--------IFDYSDEKTYHLISKGKTLGVFQLEGLQARKLCR 417

Query: 634 GMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            + P  ++++  L++L RPGP+ +   V+++N KN       +      M  ET+GV+IY
Sbjct: 418 RISPRNMDELSILLALNRPGPLRSGLDVMFSNSKN-------VPAFFRKMFPETRGVLIY 470

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QEQ+M++A + +G S +EAD+LRRA+ KK +E+M+   E+   G  + G+    A  I E
Sbjct: 471 QEQIMRLA-MFAGLSGTEADILRRAIAKKEREKMEPLLEKMKKGLLEKGMEN--AEQILE 527

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
           +L  F+ Y FNKSH+ AYA I+YQTA++K H+  EF          +  KI    Q+ R 
Sbjct: 528 ILLNFSSYAFNKSHSVAYAHITYQTAYLKAHHLEEFFKLYFAYNSSDAGKIFLAVQELRN 587

Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              ++ PP +N    D       +Y  L  +KGVG T    I +    +P  S+ +   R
Sbjct: 588 EGYRVHPPDINISGKDLVFHGKDVYLPLTVVKGVGVTLVEQIEKI---RPVSSVRELQER 644

Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
           V    + R V+ESL+ AGA D    +R   L+ L+
Sbjct: 645 VTG--VPRNVVESLITAGAFDKLYENRKLALEELN 677


>gi|297520689|ref|ZP_06939075.1| DNA polymerase III subunit alpha [Escherichia coli OP50]
          Length = 305

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 152/302 (50%), Positives = 214/302 (70%), Gaps = 12/302 (3%)

Query: 504 ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563
           AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +
Sbjct: 3   ADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDV 62

Query: 564 EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTL 618
           E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +L    T 
Sbjct: 63  EYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETT 122

Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-- 674
            +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E+I     
Sbjct: 123 AVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDV 182

Query: 675 ---HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EEM KQ+  
Sbjct: 183 QWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSV 242

Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
           F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+AA 
Sbjct: 243 FAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAV 302

Query: 792 MT 793
           MT
Sbjct: 303 MT 304


>gi|170748432|ref|YP_001754692.1| DNA polymerase III, alpha subunit [Methylobacterium radiotolerans JCM
            2831]
 gi|170654954|gb|ACB24009.1| DNA polymerase III, alpha subunit [Methylobacterium radiotolerans JCM
            2831]
          Length = 1096

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 244/864 (28%), Positives = 412/864 (47%), Gaps = 69/864 (7%)

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRV 248
            RG +R R   + +L      P+VA +++L+   +     DV+  +     +     R   
Sbjct: 167  RGDERRRLGLLAELGAASGAPMVAVSDALYHHPDRRPLQDVVTCIREGCRIEDAGYRLEA 226

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILPRFIEKECDD 302
              + +LK   EM  +F+D PEAL  TVEIA+ C+F L          P+ P    +E   
Sbjct: 227  NAERHLKPPPEMARLFADHPEALVRTVEIAQACAFDLAQLRYEYPDEPVPPGRTPQE--- 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               EE+   R +     EV  A  A             L  EL +IA+M ++ YFL + D
Sbjct: 284  -YLEEKTWERARWRYAGEVPDAVAAT------------LREELRLIAKMDYARYFLTLFD 330

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+   I +  GRGS A S   + L IT +DP +  LLF RF++ +R   PD D+DF
Sbjct: 331  VVEFARGRGI-LCQGRGSAANSAVCFCLGITAVDPSKHRLLFARFISENRGEPPDIDVDF 389

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+EVI+++  +YG ER A   T    + + A+R+VG+ L +       +   +   
Sbjct: 390  EHERREEVIQHLYARYGRERAALCATVIHYRPRMAIREVGKVLGLTEDVTAAIADTVWG- 448

Query: 483  PAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 S      D   REA L   +P++ + L+++ +L G  RH S H  G V+    L 
Sbjct: 449  -----SWGTGMPDRHVREAGLDPENPAIRQALDLAHQLIGFPRHLSQHVGGFVLTRGRLD 503

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ--RGVKVDL 598
            + VP+     +D    +++   I+  GL+K D L L  LT L++ LDFL +    +   L
Sbjct: 504  ETVPVGNGAMADRTFIEWDKDDIDAIGLMKVDVLALGMLTCLKRGLDFLERDHGTLYATL 563

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
            + +P DD  TY +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI  D
Sbjct: 564  ADLPQDDPATYAMLAKADSVGVFQVESRAQMSMLPRLKPKEFYDLVVQVAIVRPGPIQGD 623

Query: 657  NIVVYNNRKNGKEKI--VSIHPLIDP------MLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             +  Y  R++G + +   + HP   P      +L++T GV ++QE  MQIA   +G++ +
Sbjct: 624  MVHPYLRRRSGIDPVEYPAPHPDHGPADELKEVLQKTYGVPLFQEHAMQIAITAAGFTPA 683

Query: 709  EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EAD LRRAM   +    +    ++F+ G ++ G  K  A   F  +  F+ YGF +SHAA
Sbjct: 684  EADGLRRAMATFRHVGSIGGFADKFVGGMTRRGYPKDFAERCFAQIRGFSTYGFPESHAA 743

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++A++ Y +AWMK  +P  FLAA +  +     +  +  +DAR   +++    VN    D
Sbjct: 744  SFALLVYASAWMKCRHPDVFLAAILNAQPMGFYQPAQLVRDARAHGVEVRGVCVNASDWD 803

Query: 828  --FKVGDNRIYYS----LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
               + G N   ++    L A++G+     R ++   A+  + S+E   +   S  L R  
Sbjct: 804  CTLEPGGNPALHAVRIGLRAVRGLPEAAMRRLVRLRANG-YASIEGLQA---SLALPRNA 859

Query: 882  LESLVFAGALDCFGYSR---MQLLQSLDNIQ-KYAQWVEKNRTNKH-----ENIFA--HE 930
            LE L  A A    G  R   + ++++L+    + A   + +    H       +FA   +
Sbjct: 860  LERLAEADAFRSLGLDRRAALWMVRTLEGTSARKAARADPSERRAHLLDAPLPLFAWHSD 919

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--A 988
             G F  +  ++  ++  S    E+     G    GHP+  ++  L ++G       +  A
Sbjct: 920  DGLFRHEPAVDLPALAPSEAVAEDYS-ATGLSLQGHPVAFFRGRLARIGAIPARAHLDPA 978

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKG 1012
              +G  + +A +V+ +Q+  T KG
Sbjct: 979  LPQGARVTVAGLVLIRQRPGTAKG 1002


>gi|332139446|ref|YP_004425184.1| error-prone DNA polymerase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549468|gb|AEA96186.1| error-prone DNA polymerase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 1029

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 220/729 (30%), Positives = 363/729 (49%), Gaps = 48/729 (6%)

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
           G D +R +    L  T+  P++A   +L    +      +L      T V +  R  ++ 
Sbjct: 157 GRDHHRFAHYNHLQSTYAFPVIACTGALMHHADRLPLQHILHTTKVHTTVHEIGREALSN 216

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-----QVHAPILPRFIEKECDDIQ 304
            +  L+   ++  ++ +  + L NT  +A++ +F L     Q  A ++P           
Sbjct: 217 AERSLRTTHKIKKLYPE--KWLANTHSLAQQFTFSLEELRYQYPAELVPE---------G 265

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               + LR +   G+++R  +G  +      + RQ ++ EL +IA  ++  +FL + D +
Sbjct: 266 YTPTSYLRERVEEGIKIRFPEGITS------EIRQTIEKELRLIAEQEYEYFFLTIYDIV 319

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           Q+AK+  I +  GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  
Sbjct: 320 QFAKQQRI-LYQGRGSAANSVVCYCLEITAVDPRQISVLFERFISKERNEPPDIDVDFEH 378

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDP 483
            RR+E+I+Y+  KYG ER A   T    + K+A +DVG+AL    SQ+D + K I   D 
Sbjct: 379 QRREEIIQYIYKKYGRERTAIAATVICYRFKSAFKDVGKALGFSESQLDFVVKQINRRDS 438

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             P   Q +AD     E +     V +L+ +++ L G  RH S H  G VI   PL  LV
Sbjct: 439 VIPWKSQ-LADLGLNPEEK----RVQQLISLTEALLGTPRHLSQHVGGFVISAGPLYDLV 493

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
           P+         + Q++   IE  GL+K D L L  L+ ++++   L  +   V+ S IPF
Sbjct: 494 PVENAAMEARTIIQWDKDDIETLGLLKVDVLALGMLSAIRRAFS-LINKQYPVETS-IPF 551

Query: 604 -----DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
                DD + + ++    T+G+FQ+ES      L  ++P    D++  +++ RPGPI  D
Sbjct: 552 ITKLGDDKQVFDMICRADTVGVFQIESRAQMSMLPRLKPRRYYDLVVQIAIVRPGPIQGD 611

Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +  Y  R++G E I      ++ +L  T GV I+QEQV+Q+A + +G+S  EAD LRRA
Sbjct: 612 MVHPYLIRRHGNETISYPSKEVEKVLSRTMGVPIFQEQVIQLAMVAAGFSGGEADQLRRA 671

Query: 717 MGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
           M    K+  + + +++ I G +  G   T A N+FE +  FA YGF +SH+A++AV++Y 
Sbjct: 672 MASWKKDGRIFEFRDKLIKGMTNKGYDSTFAHNLFEQIKGFAGYGFPESHSASFAVLAYV 731

Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF----KVG 831
           + W+K ++PVEF  A +           +  QDA++ NI +  P VN    +     K  
Sbjct: 732 SCWLKFYFPVEFYVALLNSWPMGFYTPSQLVQDAKRHNIYVEAPCVNKSDTEHTLVTKGE 791

Query: 832 DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
           D  I   L  IKG+    +  I++      +  +E    ++    +    LE+L  A A 
Sbjct: 792 DKYIQLGLKLIKGLSEVASHKIVKNRPAAGYTHIE----QIQHLSIKSNELEALASADAF 847

Query: 892 DCFGYSRMQ 900
                +R +
Sbjct: 848 RTISGNRYE 856


>gi|90420676|ref|ZP_01228582.1| DNA polymerase III, alpha subunit [Aurantimonas manganoxydans
            SI85-9A1]
 gi|90334967|gb|EAS48728.1| DNA polymerase III, alpha subunit [Aurantimonas manganoxydans
            SI85-9A1]
          Length = 1171

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 280/1052 (26%), Positives = 453/1052 (43%), Gaps = 109/1052 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  + V S +S L GA     ++          + I D N +   +   Q A  A +  
Sbjct: 11   AFPEIGVASCFSFLAGASQPEELVVTAHRLGLAGLGIADRNTVAGVVRAHQAAREAELPY 70

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
              G +L                     P I        G+ RL  L+SR  L    K S 
Sbjct: 71   APGARLVFS---------------DATPDIFAYPRDRAGWGRLCRLLSRGNL-RATKGSC 114

Query: 130  RICLSWLQEIGTEGLIM-------LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             + L+ L E G EGL +       L  G  G  D A     + +A+  L   ++ FG  +
Sbjct: 115  ILTLADLLEWG-EGLNLAMIAPQALGCGQDG--DAAAM--EAGLADP-LHRLREAFGGAV 168

Query: 183  YVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVV 240
             + +   H G D+ R ++   LA     P++ATN++   +       DV+ A+  H  + 
Sbjct: 169  RLAVAPAHDGLDQRRMARAAHLAARCRTPMLATNDAFHHAPGRRRLQDVMTAIREHVPLA 228

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                      + +LK   EM  +F   PEA+  T        F L+  A   P     E 
Sbjct: 229  EAGFLLARNAERHLKAPHEMERLFRHSPEAIAETGRFFAELQFDLKSLAYEYP----DEA 284

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              + +    ELR+ A  G   R  +G  A          R+D+EL +I  +++  YFL V
Sbjct: 285  LKLSRSPAEELRHLAHEGARWRYPEGVPAS------VTTRIDYELKIIGELQYEPYFLTV 338

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
               ++ A++  I +  GRGS A SV  + + +T++ P R  LLFERF++ DR   PD DI
Sbjct: 339  HHIVKGAREKGI-LCQGRGSAANSVVCFCIGVTEVSPERAGLLFERFISSDRREPPDIDI 397

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI+Y+   YG +  A   T  + +A++A R+VG+A  +    V  L   + 
Sbjct: 398  DFEHERREEVIQYIYEHYGRDNAAIAATVITYRARSAAREVGKAFGLSEDAVSALSGSV- 456

Query: 481  NDPAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                        + D   REA  A     D +   +L  S +L G  RH S H  G VI 
Sbjct: 457  --------WGYSSADLGEREAAAAGLSAKDATTANVLSFSAELSGFPRHLSQHVGGFVIT 508

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
               + ++VP+         + +++   +++ G++K D L L  L+ L+++ D L Q+   
Sbjct: 509  KGRIDEVVPILNTGMEGRTIVEWDKDDLDELGILKIDILALGMLSCLRRAFDLL-QQHYD 567

Query: 596  VDLSLIPF----DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            + L+L       DD  TY ++    TLG+FQ+ES      L  ++PDC  D++  V++ R
Sbjct: 568  LPLTLADLSKAQDDQPTYAMIQRADTLGVFQIESRAQMTMLPKLRPDCFYDLVIEVAIVR 627

Query: 652  PGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGPI  D +  Y  RK G E +      +  +L  T GV ++QEQ M+IA + +G++ +E
Sbjct: 628  PGPIQGDMVHPYLRRKMGLEPVTFPKEELREVLGRTLGVPLFQEQAMKIAIVAAGFTPNE 687

Query: 710  ADVLRRAMG--KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            AD LRRAM   +++      QK + + G    G  +  A   F+ +  F +YGF +SHAA
Sbjct: 688  ADRLRRAMATFRRVGTIHTFQK-KMVEGMVARGYERDFAERCFKQIEGFGEYGFPESHAA 746

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++A++ Y + W+K HYP  F AA +  +        +  +DAR+  +++ P  +N    D
Sbjct: 747  SFALLVYASCWLKCHYPDVFAAALLNAQPMGFYAPSQIVRDAREHGVEMRPVDINRSGWD 806

Query: 828  -------FKVGDNR---------------IYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
                   F  G  +               +      +KG+G    R ++E      +DS+
Sbjct: 807  QSLEAAPFDPGRMKARNAGMRDHIRTRHAVRLGFRQVKGLGEADMRTLVEVRGAG-YDSV 865

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             D   R     L R  +E L  A A    GYSR   L +   +         +     E 
Sbjct: 866  RDLWLR---SGLKRATIERLADADAFASLGYSRRDALWACRAL---------DAKGSSER 913

Query: 926  IFAHEKGTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
            +   E+    D       TL    V    +   N+ R L      HP+   +  L  + +
Sbjct: 914  LPLFEQAATRDLQAEPDATLPPMPVGEEVI---NDYRFLSLSLKAHPVSFVRRDLDALRV 970

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
               E       G+ + +A +V+ +Q+  + KG
Sbjct: 971  IPDERLERLRSGSWVTVAGLVLIRQRPGSAKG 1002


>gi|254387354|ref|ZP_05002606.1| DNA polymerase III alpha subunit [Streptomyces sp. Mg1]
 gi|194346151|gb|EDX27117.1| DNA polymerase III alpha subunit [Streptomyces sp. Mg1]
          Length = 936

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 222/729 (30%), Positives = 351/729 (48%), Gaps = 36/729 (4%)

Query: 319  LEVRLAQGAIAKGYHAQ-DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
            L  R   G + +GY  +  Y +R+  EL+VIA   F+ YFL VA  +   +   I V   
Sbjct: 113  LASRACAGMVLRGYAGERAYWERMHQELDVIAYHGFASYFLTVAQVVDDVRTMGIRVA-A 171

Query: 378  RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
            RGSGAGS+  + L I   DP+   LL ERFL+  R  +PD DID    RR EV R + ++
Sbjct: 172  RGSGAGSLVNHLLGIAHADPVAQGLLMERFLSKRRHVLPDIDIDVESARRLEVYRRIIDR 231

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G ERVA +    + + + A+RDVG AL M  ++ DRL K  P    H  +  A A  + 
Sbjct: 232  FGTERVATVAMPETYRVRHAIRDVGAALSMDPAETDRLAKAFP----HIRARDARAALAE 287

Query: 498  FREAR-LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
              E R +      RL E+ + L+ L R  + H  G+++ D  L    P+        P++
Sbjct: 288  LPELRDVRGRERGRLWELVEALDALPRGIAMHPCGVLLSDASLLARTPVVPTSGEGFPMS 347

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL---SLIPFDDHETYHLL 612
            QF+   +E  GL+K D LG++  + +  ++  L +  G ++DL   + +P  D  TY L+
Sbjct: 348  QFDKDDVEDLGLLKLDVLGVRMQSAMAHAVAELRRATGEELDLDDPAQVPPGDGSTYELI 407

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEK 670
             +  TLG FQ+ES G R  +  +QP    D++  +SL+RPGP+  D +  +   ++G+  
Sbjct: 408  RSAETLGCFQIESPGQRDLVGRLQPSTFHDLVVDISLFRPGPVAADMVRPFIEARHGRAP 467

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +   H  +   L+ET GV+++ EQ+++I  +++G    EAD +RR +     E   + K 
Sbjct: 468  VRFPHEDLADALRETYGVVVFHEQIIEIVHVMTGCGRDEADRVRRGLSD--PESQGRIKV 525

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F + A+  G S  +    +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A 
Sbjct: 526  WFAATAAGRGYSPEVIGRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAG 585

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK---VGDNRIYY----SLAAIK 843
             +T +     K +    DAR+  + ++P  VN   V  +   V D    +    +LA + 
Sbjct: 586  LLTHDPGMYPK-RLLLADARRRGVPVLPLDVNRSAVAHRIELVSDVPPLWGLRLALADVH 644

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            G+    A  I    + +P+ SL DF  R       R V E L   GALD FG +R  LL 
Sbjct: 645  GISEAEAGRI---ESGQPYASLRDFWDRAHP---GRPVAERLAQVGALDAFGANRRDLLL 698

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L  +   AQ     R +    +     G  +  + L   +    + R   E  VLG   
Sbjct: 699  HLTELHG-AQRAAGARGSGQLPLGG---GKSTAAVGLPDLT---DTERLSAELGVLGMDA 751

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S H +  +   L ++G+        T  G  + +A    + Q    R G R+ + T  + 
Sbjct: 752  SRHLMGDHHAFLAELGVVPARRLRETEHGQTVLVAGAKAATQTPPIRSGRRVIFTTLDDG 811

Query: 1024 AKEYEANFF 1032
                +  FF
Sbjct: 812  TGLVDLAFF 820


>gi|254230313|ref|ZP_04923701.1| DNA polymerase III, alpha subunit subfamily, putative [Vibrio sp.
           Ex25]
 gi|262393787|ref|YP_003285641.1| DNA polymerase III subunit alpha [Vibrio sp. Ex25]
 gi|151937173|gb|EDN56043.1| DNA polymerase III, alpha subunit subfamily, putative [Vibrio sp.
           Ex25]
 gi|262337381|gb|ACY51176.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25]
          Length = 1024

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 215/716 (30%), Positives = 352/716 (49%), Gaps = 58/716 (8%)

Query: 179 GDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            +RL+V +QRH    D    +   QLA+  +LP+ A    L    E      VL A+ H 
Sbjct: 143 ANRLWVAIQRHLSNNDTEYIAHCEQLAHEFQLPITACGGVLMHDVERLPLQHVLTAIKHR 202

Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
             V +    R++  +  L+   ++V I+   PE LE +  IA  C F L           
Sbjct: 203 CSVDKLGFDRISNTERALRPFKKLVRIYK--PEWLEESTYIADLCEFKL----------- 249

Query: 297 EKECDDIQKEEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                D++ E   EL           R     G ++R  +G  A      +  Q ++ EL
Sbjct: 250 ----SDLKYEYPTELIPDGYTPDSYLRMLVERGKKLRFPEGVPA------EVNQTIENEL 299

Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +I  +K+  YFL + D + +AK+  I +  GRGS A SV  Y L IT +DP + ++LFE
Sbjct: 300 ALIQELKYHYYFLTIHDIVMFAKQQGI-LYQGRGSAANSVVCYCLEITAVDPRQIAVLFE 358

Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
           RF++ +R   PD D+DF  +RR+EVI+Y+  KYG ER A   T  S + K+A+R+VG+AL
Sbjct: 359 RFISKERKEPPDIDVDFEHERREEVIQYIYKKYGRERAALSATVISYRFKSAVREVGKAL 418

Query: 466 QMPYSQVDRLCKLIP-NDPAHPVSLQAIADDSRFREARLADPSV--DRLLEISQKLEGLY 522
            +  +Q+D   K +   D +     Q I       E  L   S+   + +++  ++ G  
Sbjct: 419 GIEETQLDFFIKNVNRRDRSQGWQAQVI-------ELGLQPESLKGQQFIQLVNEIIGFP 471

Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
           RH S H  G VI   PL +LVP+      D  + Q++   +E   L+K D L L  L  +
Sbjct: 472 RHLSQHVGGFVISSGPLYELVPVENASMEDRTIIQWDKDDLESLKLLKVDVLALGMLNAI 531

Query: 583 QKSLDFLA---QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
           +K    +    QR + +       DD   Y ++    T+G+FQ+ES      L  ++P C
Sbjct: 532 RKCFQLVEKHHQRSLSISEITRRQDDPHVYGMIQKADTIGVFQIESRAQMSMLPRLKPAC 591

Query: 640 IEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             D++  +++ RPGPI   +V+    R++ KE +      +  +L+ T GV I+QEQV++
Sbjct: 592 YYDLVIQIAIVRPGPIQGDMVHPFLKRRDQKEPVSYPSEEVKSVLERTMGVPIFQEQVIK 651

Query: 698 IAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           +A + +G+S  EAD LRRAM   K   ++ K + + I+G  + G     A  IF+ +  F
Sbjct: 652 LAMVAAGFSGGEADQLRRAMASWKKNGDLAKFRPKLINGMQERGYDLAFAERIFDQICGF 711

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            +YGF +SH+A++AV++Y +AW+K +YP EF  A +  +        +  QDAR+  +++
Sbjct: 712 GEYGFPESHSASFAVLAYCSAWLKYYYPAEFYTALLNSQPMGFYSPSQLVQDARRHGVEV 771

Query: 817 MPPSVNTP-----CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
           +P  VN        V    G   +      +KG    +A+ ++E      + S+++
Sbjct: 772 LPVCVNHSKYQHHLVSRPNGRLGVQLGFRLVKGFNAESAQRLIERKPLNGYRSIQE 827


>gi|269966539|ref|ZP_06180622.1| putative DNA polymerase III alpha chain [Vibrio alginolyticus 40B]
 gi|269828883|gb|EEZ83134.1| putative DNA polymerase III alpha chain [Vibrio alginolyticus 40B]
          Length = 1024

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 214/716 (29%), Positives = 352/716 (49%), Gaps = 58/716 (8%)

Query: 179 GDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            +RL+V +QRH    D    +   QLA+  +LP+ A    L    E      VL A+ H 
Sbjct: 143 ANRLWVAIQRHLSNNDTEYIAHCEQLAHEFQLPITACGGVLMHDVERLPLQHVLTAIKHG 202

Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
             V +    R++  +  L+   +++ I+   PE LE +  IA  C F L           
Sbjct: 203 CSVDKLGFDRISNTERALRPFKKLIRIYK--PEWLEESTYIADLCEFKL----------- 249

Query: 297 EKECDDIQKEEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                D++ E   EL           R     G ++R  +G  A      +  Q ++ EL
Sbjct: 250 ----SDLKYEYPTELIPDGYTPDSYLRMLVERGKKLRFPEGVPA------EVNQTIENEL 299

Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +I  +K+  YFL + D + +AK+  I +  GRGS A SV  Y L IT +DP + ++LFE
Sbjct: 300 ALIQELKYHYYFLTIHDIVMFAKQQGI-LYQGRGSAANSVVCYCLEITAVDPRQIAVLFE 358

Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
           RF++ +R   PD D+DF  +RR+EVI+Y+  KYG ER A   T  S + K+A+R+VG+AL
Sbjct: 359 RFISKERKEPPDIDVDFEHERREEVIQYIYKKYGRERAALAATVISYRFKSAVREVGKAL 418

Query: 466 QMPYSQVDRLCKLIP-NDPAHPVSLQAIADDSRFREARLADPSV--DRLLEISQKLEGLY 522
            +  +Q+D   K +   D +     Q I       E  L   S+   + +++  ++ G  
Sbjct: 419 GIEETQLDFFIKNVNRRDRSQGWQAQII-------ELGLQPESLKGQQFIQLVNEIIGFP 471

Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
           RH S H  G VI   PL +LVP+      D  + Q++   +E   L+K D L L  L  +
Sbjct: 472 RHLSQHVGGFVISSGPLYELVPVENASMEDRTIIQWDKDDLESLKLLKVDVLALGMLNAI 531

Query: 583 QKSLDFLA---QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
           +K    +    QR + +       DD   Y ++    T+G+FQ+ES      L  ++P C
Sbjct: 532 KKCFQLVEKHHQRSLSISEITRRQDDPHVYRMIQKADTIGVFQIESRAQMSMLPRLKPAC 591

Query: 640 IEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             D++  +++ RPGPI   +V+    R++ KE +      +  +L+ T GV I+QEQV++
Sbjct: 592 YYDLVIQIAIVRPGPIQGDMVHPFLKRRDHKEPVNYPSEEVKSVLERTMGVPIFQEQVIK 651

Query: 698 IAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           +A + +G+S  EAD LRRAM   K   ++ K + + I+G  + G     A  IF+ +  F
Sbjct: 652 LAMVAAGFSGGEADQLRRAMASWKKNGDLAKFRPKLINGMQERGYDLAFAERIFDQICGF 711

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            +YGF +SH+A++AV++Y +AW+K +YP EF  A +  +        +  QDAR+  +++
Sbjct: 712 GEYGFPESHSASFAVLAYCSAWLKYYYPAEFYTALLNSQPMGFYSPSQLVQDARRHGVEV 771

Query: 817 MPPSVNTP-----CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
           +P  VN        V    G   +      +KG    +A+ ++E      + S+++
Sbjct: 772 LPVCVNHSKYQHHLVSRPNGRLGVQLGFRLVKGFNAESAQRLIERKPLNGYRSIQE 827


>gi|182440484|ref|YP_001828203.1| putative DNA polymerase III alpha subunit [Streptomyces griseus
            subsp. griseus NBRC 13350]
 gi|178469000|dbj|BAG23520.1| putative DNA polymerase III alpha subunit [Streptomyces griseus
            subsp. griseus NBRC 13350]
          Length = 1155

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 291/1071 (27%), Positives = 496/1071 (46%), Gaps = 86/1071 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL V S +S   GA    +++ + A     A+A+TD +++  A+  ++   +AG++PI
Sbjct: 4    FTHLHVASGFSARYGASHPQDLVRRAAELGMGALALTDRDSVTGAVRHAKACLSAGVRPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFP-----TVPS--IVLLVSTAEGYQRLIELVSRMYLLD 123
             G  L +   D+ +  ++ +TP       T P   I LL  +  G+ R+  LVS  +   
Sbjct: 64   FGVDLAVPAFDSARAPHRPRTPVRGGGHVTEPRLRITLLAGSVHGWARICRLVSAAHAHP 123

Query: 124  QGKQSVRICLSW--LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                 V    SW  L+E   E ++ + G +S P+ RA       +AEK L+ ++++ G+ 
Sbjct: 124  VDGFPV---ASWEALREGLGEDVVAILGPTSEPV-RALAAGRPDIAEKLLVPWREIAGEG 179

Query: 182  LYVNLQRHRGYDRYRESQVVQLAYTHEL------PLVATNNSLFLSEEDYEAHDVLMAVA 235
            L        G        V   A+T  L      P V TN   +   E +   DVL A  
Sbjct: 180  LLRLEAVAYGLSGLGAGSVRLAAHTLALGDRLGVPTVLTNAVRYERREQHRLADVLDAAR 239

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARRCSF- 283
                V ++  P    + YLK+ +EM  +   +  A           +E T   A +C+  
Sbjct: 240  LLRPVPRRG-PLDPGERYLKSGAEMAEVAERVAAAASAPAGRGRRLIEETAATAEQCAVD 298

Query: 284  ------ILQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
                  + + H P  P  +    +  D ++      LR ++ AG+  R     + +   A
Sbjct: 299  PVRDLGLGRAHFP-EPHVVGAGTRPGDGMRL-----LRQRSEAGMTAR----GLDRDVRA 348

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
             D   RL +EL VI R+ +  YFL VA  +   +   I V   RGSGAGS+  ++L I  
Sbjct: 349  MD---RLGYELGVIERLGYEAYFLAVAQVVADVRSMGIRVA-ARGSGAGSMVNHSLFIAT 404

Query: 395  IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
             DPL   LLFERFL+  R ++PD D+D   DRR EV   +  ++G ERVA      + +A
Sbjct: 405  ADPLSHRLLFERFLSERRTALPDIDLDVESDRRLEVYDRIFERFGSERVAVTGMPETYRA 464

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            + ALRD G AL +    VDR+ K  P+  A  +   A+++    R+          L E+
Sbjct: 465  RHALRDTGLALGIRPQTVDRIAKSFPHIRACDIG-SALSELPELRQLAAEADQYGPLWEL 523

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++ L+ L R  + H  G+++ D  L   +P+        P  Q +   +E  GL+K D L
Sbjct: 524  AEGLDALPRGFAMHPCGVILSDASLLGRLPVQPAPGGAYPTVQADKHDVEDLGLLKLDVL 583

Query: 575  GLKTLTLLQKSL-DFLAQRGVKVDLSL---IPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            G++  + +  ++ +     G  +DL     +   D  T+ L+ +   LG FQLESSG + 
Sbjct: 584  GVRMQSAMAHAVAEIRRTTGRHIDLDSPDHVDLADEPTFELIRSTKVLGCFQLESSGQQD 643

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGV 688
             +  +QP  ++D+IA +SL+RPGP+   +   +   ++G E+    HP + P++ +T GV
Sbjct: 644  LIARLQPRHMQDVIADISLFRPGPVAGGMPARFIAARHGIEEPRYPHPDLVPIMDDTYGV 703

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            +I+ EQ+M I   ++G   + ADV RRA+    +  + K +  F   A + G +  +   
Sbjct: 704  VIWHEQIMMILATMTGCDRAAADVARRALADAGR--LPKVEVWFRRCAGERGYTPDVIDE 761

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD-NVEKIKKFCQ 807
            +++++ +F  YGF ++HA A+AV + Q+AW+KTH+P  F A    L+ D  +   +   Q
Sbjct: 762  VWDIVKEFGAYGFCRAHAVAFAVPAVQSAWLKTHHPAAFFAG--LLQHDPGMWAPRVLVQ 819

Query: 808  DARQFNIQIMPPSVNTP----CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
            DA+QF + I+P  VNT      V+       +  +L+ ++G+    +  I    A +P+ 
Sbjct: 820  DAKQFGVAILPVDVNTSRGAHSVEPTADGWGVRLALSTVRGITEAESARI---EAGQPYT 876

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTN 921
             L+D   R    + +  +++ L+  GAL       +R  LL     + + A    +NRT 
Sbjct: 877  GLQDLWLRA---RPSLPLVQRLIRIGALAPLQGRLTRRDLLLQATELHRSA----RNRTA 929

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                +   ++    +   L + +  +       E  VL    S H L+ +  +L ++G  
Sbjct: 930  IDGQLPLGDETHAGEPAGLPEMTGRDV---MSAEIDVLSIDVSRHLLEHHHRLLAELGAT 986

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                  A  RG  + +A +  S Q      G R+ +VT  + +   +  FF
Sbjct: 987  DARHLQAMRRGEQVLVAGVRASTQTPPIPSGKRVIFVTLEDGSGLVDLAFF 1037


>gi|300777212|ref|ZP_07087070.1| DNA polymerase III, alpha subunit [Chryseobacterium gleum ATCC
           35910]
 gi|300502722|gb|EFK33862.1| DNA polymerase III, alpha subunit [Chryseobacterium gleum ATCC
           35910]
          Length = 1024

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 239/902 (26%), Positives = 424/902 (47%), Gaps = 103/902 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+ +SL  G +S+ +++      +   +A+TD N +    +F +     GI+P++G 
Sbjct: 3   LNCHTYHSLRYGTISVEDLVQLAVDYKLKVLALTDINTVTGIYQFYRLCQDNGIKPVVGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            + ++                 V   + L    +G    I  V+R+              
Sbjct: 63  DVRVE----------------NVQYYICLAKNPKG----IAEVNRL-------------- 88

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
             L +   +G+ +     + P++  F   S Q   ++LL       +  ++ + R    +
Sbjct: 89  --LTDYNCDGISI--PKMNPPLEHCFVIYSLQNIPEKLL-------EHEFIGV-RENELN 136

Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV---VSQKDRPRVTP 250
               S++  L +     +V  +   F ++E+Y+ H VL A+  +T+   +++KD  R   
Sbjct: 137 LLINSELKSLIHK----MVILHPVTFKTDEEYKLHKVLRAIDGNTLFTKLTEKDYCR--K 190

Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
           D    ++ +++S F   PE +ENT  I   CSF  + + P   ++            EN+
Sbjct: 191 DECFIDKKKLLSQFGHYPEIIENTKHIVNECSFDFEFNTPKNKKYF-------TDSREND 243

Query: 311 LRNKAVAGLEVRLAQGAIAKGY--HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            +      L  +LA   ++K Y  ++Q  + R++ EL VI  + F GYFLI  D IQ++ 
Sbjct: 244 FK------LLSQLAYEGLSKRYPDNSQLAKARVEKELKVIDELNFCGYFLITWDIIQYSN 297

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
           +    +  GRGSGA S+ AY L ITDI PL   L FERFLN +R S PDFDID+    RD
Sbjct: 298 RMGF-MHVGRGSGANSIIAYCLGITDICPLELDLYFERFLNLNRKSPPDFDIDWSWKNRD 356

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            ++ Y+  KYG + VA   T    + K+  R++G+   +P  ++D+L K           
Sbjct: 357 VILEYIFKKYGKDHVAFCGTNVEFKRKSRFRELGKVFGLPKDELDQLSK----------- 405

Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                   + +E    +  V  + +  Q L G     S H+ GI+I + P++    +   
Sbjct: 406 --------KPKEQHDQNSVVQLIYKYEQLLVGFPNQRSMHSCGILISEEPITNYSALEFP 457

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL--SLIPFDD 605
            + + P+ QF+M   E  GL KFD L  + L  ++ +++ + + RG+ +D+  + I  D+
Sbjct: 458 PK-EFPIVQFDMHTAEDIGLEKFDILSQRGLGTIKDTVNLIKEKRGIHIDIEDTRISKDE 516

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
            +    L+   T+G F +ES  MR  L  ++ D  + ++A  S+ RPG   + ++  Y  
Sbjct: 517 IKCNEYLSVGKTIGCFYIESPAMRGLLRRLKCDNYKVLVAASSIIRPGVAQSGMMREYIF 576

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK- 722
           R N   +    H + +  L ET G+++YQE V+++A    G S +  DVLRRAM  K + 
Sbjct: 577 RHNHPGQFEYFHDVFEKELGETYGIMVYQEDVIKVAMHFGGVSAANGDVLRRAMSGKGRS 636

Query: 723 -EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              + K K+ F     + G    ++  ++  +  FA Y F K+H+A+YAV SYQ+ ++K 
Sbjct: 637 LSALQKLKDDFFESCKRKGHPDQLSQEVYRQIESFAGYSFCKAHSASYAVESYQSLYLKV 696

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           +YP+EF+ +++        + + +  +A+     I  P +N       V  + +Y  L  
Sbjct: 697 YYPIEFMVSAIN-NGGGFYRTEVYVHEAKMSGATIHNPCINLSEFHTTVYGSDVYLGLMH 755

Query: 842 IKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
           I+ +  +  + I E   +   + SLEDF  RV+   +    L+ L+F GA    G  + +
Sbjct: 756 IEKLEASIKQFIPEERKENGDYKSLEDFVKRVN---IGIETLQILIFVGAFRFTGKQKHE 812

Query: 901 LL 902
           LL
Sbjct: 813 LL 814


>gi|148269599|ref|YP_001244059.1| DNA polymerase III, alpha subunit [Thermotoga petrophila RKU-1]
 gi|147735143|gb|ABQ46483.1| DNA polymerase III, alpha subunit [Thermotoga petrophila RKU-1]
          Length = 842

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 208/636 (32%), Positives = 325/636 (51%), Gaps = 88/636 (13%)

Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
            ++Y  RL  EL VI R  F+ Y   V   ++ A+K  I VGPGRGS  GS+ A+   IT
Sbjct: 174 GEEYVSRLKRELEVIKRKGFTPYIYTVEKVVEIARKLGIKVGPGRGSAVGSLVAHLCGIT 233

Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
           +IDP+++ LLFERFLN +R   PD D+D    RR ++I+ +   +   +V Q+ TFG+L 
Sbjct: 234 EIDPIKYDLLFERFLNEERQEPPDIDVDVEDRRRKDLIKELSKSF---QVYQVSTFGNLT 290

Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
            K+                  L  LI                     + L D S++   E
Sbjct: 291 EKS------------------LKNLI--------------------NSVLPDASLEEKNE 312

Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
           I + + GL  H S HAAGIVI + PL    P+      D+P+T ++M  +++ G++K D 
Sbjct: 313 IYKIVYGLPHHPSVHAAGIVISENPL----PLPTREEEDIPITDYDMYDLQEIGVVKIDI 368

Query: 574 LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
           LGLKTL+ ++   DF  +        +  + D +TYHL++   TLG+FQLE    R+   
Sbjct: 369 LGLKTLSFIK---DFKKE--------IFDYSDEKTYHLISKGKTLGVFQLEGLQARKLCR 417

Query: 634 GMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            + P  ++++  L++L RPGP+ +   V+++N KN  E      P       ET+GV+IY
Sbjct: 418 RISPRNMDELSILLALNRPGPLRSGLDVMFSNPKNVPEFFRKTFP-------ETRGVLIY 470

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QEQ+M++A + +G S +EAD+LRRA+ KK +E+M+   E+   G  + G+    A  I E
Sbjct: 471 QEQIMRLA-MFAGLSGTEADILRRAIAKKEREKMEPLLEKMKKGLLEKGMEN--AEQILE 527

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
           +L  F+ Y FNKSH+ AYA I+YQTA++K H+  EF          + EKI    Q+ R 
Sbjct: 528 ILLNFSSYAFNKSHSVAYAHITYQTAYLKVHHLEEFFKLYFAYNSSDTEKIFLAVQELRS 587

Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              ++ PP +NT   +       +Y  L  +KGVG T    I +    +P +S+ +   R
Sbjct: 588 EGYRVHPPDINTSGKELVFHGKDVYLPLTVVKGVGATLVEQIEKI---RPINSVRELQER 644

Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
           V    + R V+ESL+ AG  D    +R   L+ L+      + VEK+            +
Sbjct: 645 VTG--VPRNVVESLITAGVFDKLYENRKLALEELN------KKVEKD--------ILEIR 688

Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
             F +K+  E  +++   +  E E++ +GF  +  P
Sbjct: 689 SLFGEKVEQESSNIKIGDIT-ELEEKSMGFPLTPVP 723


>gi|307301696|ref|ZP_07581455.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
 gi|307316281|ref|ZP_07595725.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
 gi|306898121|gb|EFN28863.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
 gi|306903394|gb|EFN33983.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
          Length = 1116

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 277/1040 (26%), Positives = 463/1040 (44%), Gaps = 94/1040 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +++S LEGA     ++          + I D N++   +    KA   G    
Sbjct: 7    FCELGARTNFSFLEGAAPAEEMVVFAKKAGLAGLGIADRNSVAGVVRAHAKAKVEGYP-- 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ-GKQSV 129
                     Q   ++     TP      I+       G+  L  L+S   L  + G  ++
Sbjct: 65   --------FQPGARLVFADGTP-----DILAYPKNRRGWGHLCRLLSAGNLRSKKGDCTL 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +      +     ++M   G   P          +  E  L T K+  G+RLY+ L  H
Sbjct: 112  HLADLLEWQEELLLIVMQGEGRPEP----------ESLEVLLGTLKEHAGNRLYLGLAPH 161

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPR 247
              G+DR+  + +  +A    + L+ATN++L+         DV+ ++  H  +       +
Sbjct: 162  YDGFDRHDFAVLAAIARKAGIGLLATNDALYHDPHYRPLADVVTSIREHVPIAGAGFLLQ 221

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + +LK   EM  +FSD PEA+ NT +  R  +F L   +   P     E  D +   
Sbjct: 222  KNAERHLKGPREMARLFSDYPEAIANTRKFFRELAFSLDELSHQYP----DENADGETPA 277

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+ LR     G   R  +G   K        +++D+EL +I   K+  YFL V   +++A
Sbjct: 278  ES-LRRLVAEGAAERYPEGVPEK------VMRQIDYELELIHDKKYEPYFLTVHKLVKFA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  NI +  GRGS A S   + L ITD+DP +F+LLF+RFL+ DR   PD D+DF  +RR
Sbjct: 331  RSVNI-LCQGRGSAANSSVCFCLGITDVDPQKFTLLFDRFLSKDRDEPPDIDVDFEHERR 389

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+   YG E         S ++++A R+V +A  +       L   I      P 
Sbjct: 390  EEVIQYIYRTYGKEHAGLTAAVISYRSRSAGREVAKAFGLSEDVQSALVSSIWGWGTSPF 449

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            +     + ++      ADP   R+L  +  L    RH S H  G VI    L ++VP+  
Sbjct: 450  T----EEQAKGAGLDAADPLTRRVLAYASLLMNFPRHLSQHVGGFVITRDRLDEVVPIMN 505

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDH 606
                D  + +++   +++  ++K D L L  LT L K    L A  G  + L+ I + DH
Sbjct: 506  TAMPDRYMIEWDKDDLDELKILKVDVLALGMLTCLAKGFKLLEAHYGEPITLAEI-YQDH 564

Query: 607  E--TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
                Y ++    T+G+FQ+ES      L  +QP  + D++  V++ RPGPI   +V  Y 
Sbjct: 565  RDAVYDMICRADTVGVFQIESRAQMSMLPRLQPREMYDLVIEVAIVRPGPIQGNMVHPYL 624

Query: 663  NRKNGK---EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             R+  +   E +V   P +  +L+ T GV ++QEQ MQIA   +G+S SEAD LRRAM  
Sbjct: 625  KRREAQRRGEAVVYPSPELKAVLERTLGVPLFQEQAMQIAITAAGFSPSEADRLRRAMAT 684

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    +   + + + G   N   +  A   F  +  F +YGF +SHAA++A + Y +AW
Sbjct: 685  FKRTGTIHTFERKMVEGMVANDYEREFAERCFNQIKGFGEYGFPESHAASFASLVYASAW 744

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF------KVGD 832
            +KT+YP  F AA +  +        +  +DAR+  ++++P  +N    D           
Sbjct: 745  LKTYYPDIFCAALLNAQPMGFYAPAQLVRDAREHGVRMLPVDINHSDWDALLEGEGAFDK 804

Query: 833  NRIYYSLAA-----------------IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            N ++   A+                 +KG+  T  + ++ A   + + S+ D   R    
Sbjct: 805  NAVHPRHASMREVIKTRKAVRLGFRLVKGLKQTDMKALV-ARRGEGYRSVHDLWLR---S 860

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
             L+R VLE L  A A    G  R   L ++  + + +  VE+        +F   +G  S
Sbjct: 861  GLSRSVLERLADADAFRSIGLDRRAALWAVKALDEQSA-VERL------PLF---EGAGS 910

Query: 936  DKITLE-KFSVEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
            D + +E K ++ +  +  +  ++ R L      HP+   +    +MGI    +  AT  G
Sbjct: 911  DDLQIEPKVALPDMPAGEQVIHDYRTLTLSLKAHPVSFMREDFSRMGILRSRDLAATATG 970

Query: 993  NNIRLAAMVVSKQQKKTRKG 1012
              + +A +V+ +Q+  +  G
Sbjct: 971  RWVTVAGLVLVRQRPGSANG 990


>gi|58038349|ref|YP_190318.1| DNA polymerase III alpha subunit [Gluconobacter oxydans 621H]
 gi|71151825|sp|Q5HXU1|DNAE2_GLUOX RecName: Full=Error-prone DNA polymerase
 gi|58000763|gb|AAW59662.1| DNA polymerase III alpha subunit [Gluconobacter oxydans 621H]
          Length = 901

 Score =  307 bits (787), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 223/743 (30%), Positives = 350/743 (47%), Gaps = 45/743 (6%)

Query: 289  APILP-RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFE 344
            +P++P RF   E +   +  +  L          RL Q A+ + Y A    +   ++  E
Sbjct: 113  SPLIPGRFNPTETERTGESAQETL---------TRLVQAALPRRYPAGAPPEVETQIAHE 163

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L +I  + ++ YFL V   ++ A+   I V  GRGS A S   Y L IT IDP+R  LLF
Sbjct: 164  LRLIGSLSYAPYFLTVNTIVRHARSLGI-VCQGRGSAANSAVCYVLGITSIDPVRSGLLF 222

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERF++ +R   PD D+DF  DRR+EVI+++   YG  R A   T    Q K ALR+VG+ 
Sbjct: 223  ERFISTERQEPPDIDVDFESDRREEVIQWIYRHYGRHRAALCATVQRYQPKGALREVGKV 282

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L +P     +L K I +  A P   +A A D       L D  +     +++ L G  R 
Sbjct: 283  LGLPEDLTGQLSKHIASSLADPDLCKARAADLGL---NLKDRRLSLTFHLARLLLGFPRQ 339

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
              TH  G V+ +  L +LVP+         +  ++   I+    +K D LGL  L  L++
Sbjct: 340  LGTHPGGFVLTEDRLDELVPLMPTAMDGRQIIVWDKDDIDVLRFMKVDVLGLGMLGCLRR 399

Query: 585  SLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
              + L      ++DL+ IP +D +TY ++    TLG FQ+ES      L  M+P    D+
Sbjct: 400  GFELLHTVYQTRMDLAAIPAEDPQTYRMVQKADTLGTFQIESRAQMSMLPRMKPATFYDL 459

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +  V++ RPGPI  D +  Y  R+   E +      +  +L +T GV ++QEQ MQ+A  
Sbjct: 460  VIQVAIVRPGPIQGDMVHPYLRRREKLEPVTYPSETLRGILGKTLGVPLFQEQAMQVAIH 519

Query: 702  LSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             +G++  EAD LRRAM   K+   +   +++ ++G   NG  +  A   F  L  F  YG
Sbjct: 520  CAGFTPGEADQLRRAMATFKMTGGVSPFRDKLVNGMLANGYEQEFAEQTFAQLEGFGSYG 579

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            F +SHAA++A+I+Y +AWMK HYP  F AA +  +        +  QDA++  +++ P  
Sbjct: 580  FPESHAASFALIAYASAWMKCHYPDVFCAALLNSQPMGFYAPSQIVQDAQRHGVEVRPIC 639

Query: 821  VNTPCVDFKVGDNR------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
            +N    D  +   R      +      +KG+       ++ A     ++S++D   R D 
Sbjct: 640  INASRWDCTLERGRNGRHAAVRLGFRMVKGLANGHGAALIAARMPD-YESIDDVWRRAD- 697

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA----QWVEKNRTNKHENIFAHE 930
              +    L+ L  A A   FG  R   L S+  +   A    +  ++ R      +   E
Sbjct: 698  --VPVAALKCLAEADAFRVFGQMRRAALWSIKGLADTALPLFEAADRGRNFPLPEVIEPE 755

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
                   ITL   S E +SV    + R  G   +GHP+   +  LRK GI    +     
Sbjct: 756  -------ITLPMMS-ERASV--HEDYRATGLSLNGHPVAFLREGLRKEGIVRCGDLPYLR 805

Query: 991  RGNNIRLAAMVVSKQQKKTRKGS 1013
             G  I+L  +V+ +Q+  T  G+
Sbjct: 806  DGRRIQLTGLVLMRQRPGTANGT 828


>gi|153007424|ref|YP_001368639.1| error-prone DNA polymerase [Ochrobactrum anthropi ATCC 49188]
 gi|151559312|gb|ABS12810.1| DNA polymerase III, alpha subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 1077

 Score =  307 bits (787), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 239/858 (27%), Positives = 397/858 (46%), Gaps = 73/858 (8%)

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQKDRPR 247
            H+G+D  R  ++ + A    +PL+ATN+ L+   +     DVL A   H+TV +      
Sbjct: 162  HQGHDGRRAERIARFAAEANVPLLATNDVLYHHPDRRALQDVLTATRYHTTVFAAGQLLE 221

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILPRFIEKECD 301
               + +LK   EM+ +F D  EA+E T +     +F L          P+ P        
Sbjct: 222  KNAERHLKPPKEMLRLFRDYAEAVEATADFVAPITFQLDELKYDYPDEPVPP-------- 273

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               K  +  L +    G        +I        ++     EL +I +++++ YFL V 
Sbjct: 274  --GKTPQQHLHDLTWEGAARHYGANSIPPKVQTLIHK-----ELALIEKLQYAAYFLTVY 326

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A++ +I +  GRGS A SV  + L +T +DP +  LLFERFL+ +R   PD D+D
Sbjct: 327  DIVSYARREDI-LCQGRGSAANSVVCFCLGVTGVDPTQVDLLFERFLSVERKEPPDIDVD 385

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EV++YV  +Y  +R A + T  S ++++A+RDVG+AL +       L   +  
Sbjct: 386  FEHERREEVMQYVYKRYSRDRAAIVATVISYRSRSAIRDVGKALGLTEDVTAALANTVWG 445

Query: 482  DPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                 +S   I D    R+A L   +P + R +E++  L G  RH S H  G V+    L
Sbjct: 446  -----ISGGGI-DKQHIRQAGLDPDNPIIRRAVELAITLIGFPRHLSQHVGGFVLTRDRL 499

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------G 593
             + VP+      D    +++   I++ GL+K D L L  LT ++K+ D + Q       G
Sbjct: 500  DETVPIGPAAMEDRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPEKYDG 559

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             K+ L+ +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPG
Sbjct: 560  KKLTLANLPREDEAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPREFYDLVIEVAIVRPG 619

Query: 654  PI--DNIVVYNNRKNGKE--KIVSIHPLIDP------MLKETQGVIIYQEQVMQIAQLLS 703
            PI  D +  Y  R+N +E   + S  P   P      +L +T+GV ++QEQ M+IA   +
Sbjct: 620  PIQGDMVHPYLRRRNNEEPCTLPSPAPEYGPPDELLQILGKTKGVPLFQEQAMRIAMEAA 679

Query: 704  GYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
             ++  EA+ LRRAM    K   +   + + I G    G  +T A N F  +  F +YGF 
Sbjct: 680  KFTPDEANQLRRAMATFRKMGTIHTMETKMIEGMVNRGYDRTFAENCFNQIKGFGEYGFP 739

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN
Sbjct: 740  ESHAASFAHLVYISAWIKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVN 799

Query: 823  TPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
                D  + D       +      I G        ++ A   +P+ ++ED   R+   +L
Sbjct: 800  FSHWDNMLEDTLDIRPALRLGFRQIDGFSKRDT-ELLIADRQEPYRTIEDMHRRL---RL 855

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            +RR    L  A   D FG        SLD  ++ A W  +   N  +      +   + +
Sbjct: 856  DRRAFTLLADA---DAFG--------SLDIDRRAALWAVRRLPN--DETLPLFRAAATSE 902

Query: 938  ITLE---KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
            +  E   K     +S     +         GHPL   +  L   G+           G  
Sbjct: 903  LAEEPRTKLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRR 962

Query: 995  IRLAAMVVSKQQKKTRKG 1012
            +++A +V  +Q+  + KG
Sbjct: 963  MKVAGVVTVRQRPGSAKG 980


>gi|126463545|ref|YP_001044659.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105209|gb|ABN77887.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides ATCC
           17029]
          Length = 940

 Score =  307 bits (787), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 263/928 (28%), Positives = 426/928 (45%), Gaps = 88/928 (9%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL----EFSQKACAAG 66
           FV L   S+++ L GA     ++ + A+   PA+AI D N++   +    E  + A   G
Sbjct: 15  FVELSATSNFTFLTGASHPEELMRRAASLGLPALAIADENSVAGIVRAYGEAKEIARETG 74

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
             P +     I +++ +              S+ +L      + RL  L++ +      K
Sbjct: 75  SAPRLIPAARIVVREGM--------------SVTVLPRDRAAWGRLCRLLT-LGRRAAPK 119

Query: 127 QSVRICLSWL--QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            S  +  + L     G E L+     SSG           Q    RL         R+ +
Sbjct: 120 GSCDLGFADLLAHAEGQEMLLHPPARSSG---------GWQTLAARLAAACP---GRVAL 167

Query: 185 NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ- 242
            L  H  G DR R  +   LA    +P VA+   +          DVL A+     V + 
Sbjct: 168 ILAPHYAGQDRVRFERQALLAARLGIPTVASGLPILHHGARRRLADVLTAIRLGCRVDEL 227

Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---EKE 299
             R  V  +  L++ +EM+ ++    EA+  + EIA R  F L       P  I   E  
Sbjct: 228 GRRALVNGEQRLRSEAEMLRLYPGHEEAVFRSAEIAGRLDFCLSELRYEYPSEISRGESP 287

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            D + +     L  +  AG+  ++A    A+  H          EL +I ++ +  YFL 
Sbjct: 288 ADRLARLTREGLVWRFPAGVPEKIA----AQARH----------ELELIGKLGYEPYFLT 333

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V D +++A+   I +  GRGS A S+  YAL +T +DP   +++FERF++  R   PD D
Sbjct: 334 VNDIVRFARDRGI-LCQGRGSAANSIVCYALGVTSVDPEVGTMVFERFVSEARNEPPDID 392

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           +DF  +RR+EVI+++ ++YG +R     T    + K A+R+VGRA+ +    +  +   I
Sbjct: 393 VDFEHERREEVIQHIYSRYGRDRAGLCATVIHYRGKRAVREVGRAMGLSEDTLTAMASQI 452

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGD 536
                 P +L     + R RE  L DP+  RL   L++  +++G  RH S H  G VI +
Sbjct: 453 WGW-GGPGALT----ERRLREIGL-DPNDRRLWLALQLIDEIQGFPRHLSQHVGGFVITE 506

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK 595
             L +LVP+         V  ++   I+  G++K D L L  LT ++K+ D + +     
Sbjct: 507 GRLDELVPIENAAMEGRTVICWDKDDIDMLGILKVDVLALGMLTCIRKAFDLIESHHHTS 566

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             L+ +P DD +TY +L    +LG+FQ+ES      L  M+P C  D++  V++ RPGPI
Sbjct: 567 YTLATLPRDDSQTYDMLCRADSLGVFQVESRAQMNFLPRMRPRCFYDLVVQVAIIRPGPI 626

Query: 656 --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             D +  Y  R+NG+E        +  +L +T GV ++QEQ MQIA + + +S  EAD L
Sbjct: 627 QGDMVHPYIRRRNGREDPHLPSDALGKVLGKTLGVPLFQEQAMQIAIIGANFSPEEADRL 686

Query: 714 RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           RRA+   K    + + KERF++G   NG  K  A   F  +  F  YGF +SHAA++A++
Sbjct: 687 RRALATFKKHGNVTELKERFMNGMLANGYDKDFATRCFSQIEGFGSYGFPESHAASFALL 746

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            Y +AW+K H+P  F  A +  +        +  +DAR   + ++PP +N    D  +  
Sbjct: 747 VYASAWIKCHHPGIFACALLNAQPMGFYAPAQIVRDARAHGVIVLPPCINASLWDNVMER 806

Query: 833 NR-----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN-RRVLESLV 886
           +R     +      IKGV    A+ I+ A  +  + ++ED   R         R+ E+  
Sbjct: 807 DREGRLALRLGFRQIKGVAEEEAQWIVAARGNG-YRAVEDIWRRAGVPPATVTRLAEA-- 863

Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQW 914
                DCF         +L   ++ AQW
Sbjct: 864 -----DCFA--------ALGLTRREAQW 878


>gi|260776316|ref|ZP_05885211.1| DNA polymerase III alpha subunit [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607539|gb|EEX33804.1| DNA polymerase III alpha subunit [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 1023

 Score =  307 bits (787), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 223/735 (30%), Positives = 367/735 (49%), Gaps = 39/735 (5%)

Query: 181 RLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           RL++ +QRH    D+   +   +LA    +P+ A    L  +        VL AV H + 
Sbjct: 145 RLWLGVQRHLDADDKSYLTHCEELAQELMVPITACGGVLMHTANRLPLQHVLTAVRHGSS 204

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           V +  +  +T  +  L+++ ++  +F    E LE ++ +  +C F L+      P     
Sbjct: 205 VDKIGKHLLTNTERTLRSKEKLARLFKQ--EWLEESIRLTEQCQFSLEKLKYEYPH---- 258

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
           E     +   + LR    +G   R  +G        QD  + +D EL +I  + +  YFL
Sbjct: 259 ELVPSGETPMSYLRKLVDSGKRRRFPEGI------PQDISETIDKELELIDELNYPYYFL 312

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            + D + +AK+ NI +  GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD 
Sbjct: 313 TIHDIVMFAKRQNI-LYQGRGSAANSVVCYCLEITAVDPRQISVLFERFISKERDEPPDI 371

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DF  +RR+EVI+Y+  KYG ER A   T  + + K+A+RDVG+AL +  SQ+D   K 
Sbjct: 372 DVDFEHERREEVIQYIYQKYGRERAALAATVITYRFKSAVRDVGKALGIEESQLDYFIKN 431

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSV--DRLLEISQKLEGLYRHASTHAAGIVIGD 536
           + N     +  QA     +  E  L   S+  ++ + +   + G  RH S H  G VI  
Sbjct: 432 V-NRRDRELGWQA-----QIVELGLQPDSLKGEQFITLVNDILGFPRHLSQHVGGFVIAA 485

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            PL +LVP+     +   V Q++   +E   L+K D L L  L+ + K    L +R  + 
Sbjct: 486 GPLYELVPVENASMAGRTVIQWDKDDLESLKLMKVDVLALGMLSAIHKCFQ-LVKRFHQQ 544

Query: 597 DLSLIPF----DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
           DL++       DD E Y ++    T+G+FQ+ES      L  ++P    D++  +++ RP
Sbjct: 545 DLTIAEITRRQDDPEVYGMIQKADTVGVFQIESRAQMSMLPRLRPKTYYDLVIQIAIVRP 604

Query: 653 GPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           GPI   +V+    R++G E +      +  +L  T GV I+QEQV+++A + +G+S  EA
Sbjct: 605 GPIQGDMVHPFLKRRDGIEPVTFPSDEVKDVLSRTMGVPIFQEQVIKLAMVAAGFSGGEA 664

Query: 711 DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
           D LRRAM   K   ++ K + + I G    G  +  A  IF+ +  F +YGF +SH+A++
Sbjct: 665 DQLRRAMASWKKNGDLVKFRTKLIEGMLARGYEQEFAERIFDQILGFGEYGFPESHSASF 724

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
           AV++Y +AW+K ++P  F A+ +           +  QDAR+ ++ I+P  VN    D +
Sbjct: 725 AVLAYCSAWLKHYHPEAFYASLLNSLPMGFYSASQLVQDARRHHVLILPVCVNQSHYDHQ 784

Query: 830 V--GDNRIYYSLA--AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           V    N++   L    IKG    ++  +++A   + F        ++    LN+R LE L
Sbjct: 785 VVRCGNKLAIRLGFRQIKGFSAESSLQLLKARGSEGFQH----PRQLKHIGLNQRDLELL 840

Query: 886 VFAGALDCFGYSRMQ 900
             A A+     +R Q
Sbjct: 841 ASANAMQSIANNRFQ 855


>gi|19548814|gb|AAL90804.1| polymerase III subunit alpha [Escherichia coli]
          Length = 323

 Score =  307 bits (787), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 154/323 (47%), Positives = 223/323 (69%), Gaps = 13/323 (4%)

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
           F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +R
Sbjct: 2   FDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIR 61

Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
           DVGR L  PY  VDR+ KLIP DP   ++ +A   + +  E   AD  V  L+++++KLE
Sbjct: 62  DVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLE 120

Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
           G+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TL
Sbjct: 121 GVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTL 180

Query: 580 TLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
           T++  +L+ + +R  K     +D++ IP DD +++ +L    T  +FQLES GM+  ++ 
Sbjct: 181 TIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKR 240

Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQG 687
           +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E+I        H  + P+L+ T G
Sbjct: 241 LQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYG 300

Query: 688 VIIYQEQVMQIAQLLSGYSLSEA 710
           +I+YQEQVMQIAQ+LSGY+L  A
Sbjct: 301 IILYQEQVMQIAQVLSGYTLGGA 323


>gi|281411683|ref|YP_003345762.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
 gi|281372786|gb|ADA66348.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
          Length = 842

 Score =  307 bits (787), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 208/636 (32%), Positives = 324/636 (50%), Gaps = 88/636 (13%)

Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
            ++Y  RL  EL VI R  F+ Y   V   +  A+K  I VGPGRGS  GS+ A+   IT
Sbjct: 174 GEEYVSRLKRELEVIKRKGFTPYIYTVGKVVDIARKLGIKVGPGRGSAVGSLVAHLCGIT 233

Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
           +IDP+++ LLFERFLN +R   PD D+D    RR ++I+ +   +   +V Q+ TFG+L 
Sbjct: 234 EIDPIKYDLLFERFLNEERQEPPDIDVDVEDRRRKDLIKELSKSF---QVYQVSTFGNLT 290

Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
            K+                  L  LI                     + L D S++   E
Sbjct: 291 EKS------------------LKNLI--------------------NSVLPDASLEEKNE 312

Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
           I + + GL  H S HAAGIVI + PL    P+      D+P+T ++M  +++ G++K D 
Sbjct: 313 IYKIVYGLPHHPSVHAAGIVISENPL----PLPTREEEDIPITDYDMYDLQEIGVVKIDI 368

Query: 574 LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
           LGLKTL+ ++   DF  +        +  + D +TYHL++   TLG+FQLE    R+   
Sbjct: 369 LGLKTLSFIK---DFKKE--------IFDYSDEKTYHLISKGKTLGVFQLEGLQARKLCR 417

Query: 634 GMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            + P  ++++  L++L RPGP+ +   V+++N KN  E      P       ET+GV+IY
Sbjct: 418 RISPRNMDELSILLALNRPGPLRSGLDVMFSNPKNVPEFFRKTFP-------ETRGVLIY 470

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QEQ+M++A + +G S +EAD+LRRA+ KK +E+M+   E+   G  + G+    A  I E
Sbjct: 471 QEQIMRLA-MFAGLSGTEADILRRAIAKKEREKMEPLLEKMKKGLLEKGMEN--AEQILE 527

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
           +L  F+ Y FNKSH+ AYA I+YQTA++K H+  EF          + EKI    Q+ R 
Sbjct: 528 ILLNFSSYAFNKSHSVAYAHITYQTAYLKVHHLEEFFKLYFAYNSSDTEKIFLAVQELRS 587

Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              ++ PP +NT   +       +Y  L  +KGVG T    I +    +P +S+ +   R
Sbjct: 588 EGYRVHPPDINTSGKELVFHGKDVYLPLTVVKGVGATLVEQIEKI---RPINSVRELQER 644

Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
           V    + R V+ESL+ AG  D    +R   L+ L+      + VEK+            +
Sbjct: 645 VTG--VPRNVVESLITAGVFDKLYENRKLALEELN------KKVEKD--------ILEIR 688

Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
             F +K+  E  +++   +  E E++ +GF  +  P
Sbjct: 689 SLFGEKVEQESSNIKIGDIT-ELEEKSMGFPLTPVP 723


>gi|126668604|ref|ZP_01739557.1| DNA polymerase III, alpha subunit, putative [Marinobacter sp. ELB17]
 gi|126626934|gb|EAZ97578.1| DNA polymerase III, alpha subunit, putative [Marinobacter sp. ELB17]
          Length = 1068

 Score =  307 bits (786), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 282/1068 (26%), Positives = 464/1068 (43%), Gaps = 131/1068 (12%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            + E   S+  L   S++S L GA   + + ++ A     A+AITD  ++           
Sbjct: 11   HYENPESYAELHCFSNFSFLTGASHPHELAEQAAGLGYSALAITDACSVAGIPRAWAALK 70

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS------ 117
             + ++ I G   ++              P    P  +LL  T +GY +L +L++      
Sbjct: 71   NSPVKLITGSWFELS----------DAPPRACTPCFILLARTRKGYGQLCQLITSARRRA 120

Query: 118  -----RMYLLDQGKQSVRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
                 ++Y  D     +  CL  WL                 P   A   +   +A    
Sbjct: 121  EKGQYQLYYRDLEVHPLDDCLCLWL-----------------PPTLANADSQQALAAGEW 163

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQVVQ---LAYTHELPLVATNNSLFLSEEDYEAH 228
            L   +LF  RL+  L   R  +   E Q+ +   LA     P+ A+ +      +     
Sbjct: 164  LL--RLFDRRLW--LAASRTLESGEEQQLARIRWLATELRCPITASGDVHMHCRKRQPLQ 219

Query: 229  DVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQ 286
            DVL A+ + T +           + YL+  + +  +F   P A L+ T  IA++C+F   
Sbjct: 220  DVLTALRNHTNLENAGHCLFQNGERYLRPVAVLQRLF---PTAWLQQTQVIAQQCTF--- 273

Query: 287  VHAPILPRFIEKECDDIQKEEENEL--RNKAVAGLEVRLAQGAIAKGYHAQDYRQ---RL 341
                        E   ++ E   +L       AG  ++L +    + Y      Q    +
Sbjct: 274  ------------EPGSLRYEYPPDLVPSGTCAAGYLLKLTREGERRRYPEGTPLQVQALI 321

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
              EL +I+ M++  YFL + D + +A+   I +  GRGS A S   Y L IT+++P +  
Sbjct: 322  HKELGLISEMQYEHYFLTIEDIVAFARGRGI-LCQGRGSAANSAVCYCLGITEVNPAKVD 380

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERF++ DR   PD D+DF   RR+EVI+Y+  +Y  +R A   T    + ++ +RDV
Sbjct: 381  LLFERFISKDRNEPPDIDVDFEHQRREEVIQYIYQRYSRDRAAIAATVIRYRPRSTIRDV 440

Query: 462  GRALQMPYSQVDRLCKLIP-NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            G+ L      V++L   I   D A P   Q I D +  R   +A    D+   +   L G
Sbjct: 441  GKVLGFDPLLVEQLLDGIDWRDKATPWR-QQILDKNLTRNPNVA----DQFFTLVNTLLG 495

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              RH S H  G VI   PL++LVP+     +D  V Q++   +E  GL+K D L L  LT
Sbjct: 496  FPRHLSQHVGGFVISAGPLAELVPIENAAMADRTVIQWDKNDLESLGLMKVDVLALGILT 555

Query: 581  LLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
             ++K+L+ + AQ G    +  IP +D +TY +L T  ++G+FQ+ES      L  ++P  
Sbjct: 556  AIRKALEMISAQLGRPFHMQDIPQEDPDTYAMLQTGDSVGVFQVESRAQINMLPRLKPAT 615

Query: 640  IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
              D++  V++ RPGPI  D +  Y  R++G E +   +  I  +L+ T GV I+QEQV++
Sbjct: 616  YYDLVVQVAIVRPGPIQGDMVHPYLKRRHGLEPVNYPNQAIQRVLERTLGVPIFQEQVIR 675

Query: 698  IAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            +A + +G+S  EAD LRRAM   K   ++   +++ +SG  + G +   A  +++ +  F
Sbjct: 676  LAMVAAGFSGGEADQLRRAMAAWKSHGDLTPFRDKLLSGMKERGHTDDFAERLYQQICGF 735

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
              YGF +SHAA++A++ Y +AW+K HYP  F  A +  +        +  QDAR+  + +
Sbjct: 736  GGYGFPESHAASFALLVYVSAWIKRHYPAAFYCALLNSQPMGFYSASQLVQDARRHGVDV 795

Query: 817  MPPSVNTPCVDFKV------------------GDN--RIYYSLAAIKGVGTTTARHIMEA 856
             P  VN    D  +                   DN   +   L+ I+G+       +   
Sbjct: 796  QPLDVNHSQWDHTLQSQTPQSQAPQSQTLQTQTDNPLSLRLGLSQIRGLSQQAGTSV--- 852

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
            SA +P +             LN+R +E L  A A+  F  +R Q    L   ++ A+   
Sbjct: 853  SAKRPENGYTSSSQLRQLTGLNQRDMELLAGANAMPGFTSNRHQAYWQLLGHEQPAELFI 912

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                N  E                E+    N       +    G     HPL     +LR
Sbjct: 913  GEDNNAPEP-------------ACEQLPTPNEGQNIAADYSSQGLTLQRHPLA----LLR 955

Query: 977  KMGIKGYEESVATIR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            + G   +  S + +     G  +++A +V  +Q+  T  G     VTF
Sbjct: 956  EQGHLSFCLSASELNTIEPGRPVQVAGLVTGRQRPGTASG-----VTF 998


>gi|127513028|ref|YP_001094225.1| DNA polymerase III, alpha subunit [Shewanella loihica PV-4]
 gi|126638323|gb|ABO23966.1| DNA polymerase III, alpha subunit [Shewanella loihica PV-4]
          Length = 1078

 Score =  307 bits (786), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 195/636 (30%), Positives = 322/636 (50%), Gaps = 47/636 (7%)

Query: 203 LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-------TVVSQKDRPRVTPDHYLK 255
           L+ T ++P VA         E     D+L  +AH         + S      + P    +
Sbjct: 225 LSQTQKVPCVAAGGVRMHEAERQPLLDILTCIAHGRDLDSGVALCSINAEASLKPIAAQR 284

Query: 256 NRSEMVSIFSDLPEALENTVEIARRCSFIL-----QVHAPILPRFIEKECDDIQKEEENE 310
            R           E ++N + +ARRC F L     +  A ++P  ++   D + +     
Sbjct: 285 KRYPQ--------EWIDNGLALARRCHFSLDELKYEYPAEVVPAGMQAS-DYLAQAVREG 335

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            R +   G+  R+              + + + EL +IA M +  +FL + D + +AK  
Sbjct: 336 ARRRFPDGVPDRV--------------KAQYEKELELIAAMAYEYFFLTIYDIVCFAKSQ 381

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            I +  GRGS A SV  Y L IT++DP + ++LFERF++ +R   PD D+DF  +RR+EV
Sbjct: 382 QI-LYQGRGSAANSVVCYCLGITEVDPTKINMLFERFISKERNEPPDIDVDFEHERREEV 440

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DPAHPVSL 489
           I+Y+  KYG +R A        + K+A+ DVG+AL +   QV  + K I   DP H  + 
Sbjct: 441 IQYIYRKYGRDRTALAAAVICYRFKSAMGDVGKALGIDAEQVALMIKNIDRRDPKHHWTT 500

Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
           Q  A        R+       LL + Q L G  RH S H  G +I   PLS+LVP+    
Sbjct: 501 QLAAMLPEAGRGRM-------LLPLVQTLIGFPRHLSQHVGGFIISAGPLSELVPIENAA 553

Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
            +D  V Q++   +E  GL+K D L L  LT ++K+   L+       ++ + +++ E Y
Sbjct: 554 MADRTVIQWDKDDLESLGLLKVDILALGMLTAIRKTFTLLSLPEKAFSMADVAWEEAEVY 613

Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNG 667
            +L    ++G+FQ+ES      L  ++P C  D++  +++ RPGPI  D +  Y  R++G
Sbjct: 614 RMLQAGDSIGVFQVESRAQSAMLPRLKPACYYDLVVQIAIVRPGPIQGDMVHPYLRRRDG 673

Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMD 726
            E +    P ++ +L  T GV I+QEQV+Q+A + +G+S  EAD LRRAM   K   E++
Sbjct: 674 LEAVEYPSPAVESVLSRTMGVPIFQEQVIQLAMVAAGFSGGEADQLRRAMASWKRTGELE 733

Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
           K + + + G +  G S+T A  I+  +  F +YGF +SH+A++A+++Y +A++K HYP  
Sbjct: 734 KFEAKLLQGMAARGYSQTFAEQIYRQIKGFGEYGFPESHSASFALLAYVSAYLKHHYPAA 793

Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           F  A +  +        +  QD ++ ++ ++P  VN
Sbjct: 794 FCCALLNSQPMGFYSPSQLIQDVQRHDVMVLPVCVN 829


>gi|91228566|ref|ZP_01262486.1| putative DNA polymerase III alpha chain [Vibrio alginolyticus
           12G01]
 gi|91187890|gb|EAS74202.1| putative DNA polymerase III alpha chain [Vibrio alginolyticus
           12G01]
          Length = 1024

 Score =  307 bits (786), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 213/716 (29%), Positives = 351/716 (49%), Gaps = 58/716 (8%)

Query: 179 GDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            +RL+V +QRH    D    +   QLA+  +LP+ A    L    E      VL A+ H 
Sbjct: 143 ANRLWVAIQRHLSNNDTEYIAHCEQLAHEFQLPITACGGVLMHDVERLPLQHVLTAIKHG 202

Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
             V +    R++  +  L+   +++ I+   PE LE +  IA  C F L           
Sbjct: 203 CSVDKLGFGRISNTERALRPFKKLIRIYK--PEWLEESTYIADLCEFKL----------- 249

Query: 297 EKECDDIQKEEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                D++ E   EL           R     G  +R  +G  A      +  Q ++ EL
Sbjct: 250 ----SDLKYEYPTELIPDGYTPDSYLRMLVERGKRLRFPEGVPA------EVNQTIENEL 299

Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +I  +K+  YFL + D + +AK+  I +  GRGS A SV  Y L IT +DP + ++LFE
Sbjct: 300 ALIQELKYHYYFLTIHDIVMFAKQQGI-LYQGRGSAANSVVCYCLEITAVDPRQIAVLFE 358

Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
           RF++ +R   PD D+DF  +RR+EVI+Y+  KYG +R A   T  S + K+A+R+VG+AL
Sbjct: 359 RFISKERKEPPDIDVDFEHERREEVIQYIYKKYGRKRAALAATVISYRFKSAVREVGKAL 418

Query: 466 QMPYSQVDRLCKLIP-NDPAHPVSLQAIADDSRFREARLADPSV--DRLLEISQKLEGLY 522
            +  +Q+D   K +   D +     Q I       E  L   S+   + +++  ++ G  
Sbjct: 419 GIEETQLDFFIKNVNRRDRSQGWQAQII-------ELGLQPESLKGQQFIQLVNEIIGFP 471

Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
           RH S H  G VI   PL +LVP+      D  + Q++   +E   L+K D L L  L  +
Sbjct: 472 RHLSQHVGGFVISSGPLYELVPVENASMEDRTIIQWDKDDLESLKLLKVDVLALGMLNAI 531

Query: 583 QKSLDFLA---QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
           +K    +    QR + +       DD   Y ++    T+G+FQ+ES      L  ++P C
Sbjct: 532 KKCFQLVEKHHQRSLSISEITRRQDDPHVYRMIQKADTIGVFQIESRAQMSMLPRLKPAC 591

Query: 640 IEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             D++  +++ RPGPI   +V+    R++ KE +      +  +L+ T GV I+QEQV++
Sbjct: 592 YYDLVIQIAIVRPGPIQGDMVHPFLKRRDHKEPVSYPSEEVKSVLERTMGVPIFQEQVIK 651

Query: 698 IAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           +A + +G+S  EAD LRRAM   K   ++ K + + I+G  + G     A  IF+ +  F
Sbjct: 652 LAMVAAGFSGGEADQLRRAMASWKKNGDLAKFRPKLINGMQERGYDLAFAERIFDQICGF 711

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            +YGF +SH+A++AV++Y +AW+K +YP EF  A +  +        +  QDAR+  +++
Sbjct: 712 GEYGFPESHSASFAVLAYCSAWLKYYYPAEFYTALLNSQPMGFYSPSQLVQDARRHGVEV 771

Query: 817 MPPSVNTP-----CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
           +P  VN        V    G   +      +KG    +A+ ++E      + S+++
Sbjct: 772 LPVCVNHSKYQHHLVSRPNGRLGVQLGFRLVKGFNAESAQRLIERKPLNGYRSIQE 827


>gi|241766940|ref|ZP_04764742.1| DNA polymerase III, alpha subunit [Acidovorax delafieldii 2AN]
 gi|241362588|gb|EER58455.1| DNA polymerase III, alpha subunit [Acidovorax delafieldii 2AN]
          Length = 1100

 Score =  307 bits (786), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 255/863 (29%), Positives = 407/863 (47%), Gaps = 81/863 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   SS+S   GA     ++ + AA    A+A+TD  ++   +   + A    ++
Sbjct: 12  PGYAELHCLSSFSFQRGASQPQELVARAAALGYQALALTDECSVAGVVRAHEAARDVDLR 71

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR--------MY 120
            I+G +       +L++              V L    EG+  L E ++          Y
Sbjct: 72  LILGSEF---AWGDLRL--------------VALARHLEGWGNLCEFITAARRDAPKGQY 114

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L +G        S LQ  G E L++      G  D   F   S   E            
Sbjct: 115 RLHEGTD-----FSLLQ--GCELLLIPRRERFGASD---FVAISACLESAAGQLDIKIRP 164

Query: 181 RLYVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            L++ ++ H+G D       +Q +    +LPLVA  +    +       DVL AV     
Sbjct: 165 HLWLAVELHQGADDSLWLATLQRVGAALQLPLVAAGDVHMHARSRKPLQDVLTAVQRGCS 224

Query: 240 VSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IE 297
           VS+     +   + +L+ R  + SI+   P  L  T+ +A RC+F L     I  R+ +E
Sbjct: 225 VSECGFALQFNAERHLRPRLRLASIYP--PWLLAATLTVAARCTFNLD---EIRYRYPLE 279

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                +   E   L   A  G   R   G + +   AQ  R     EL +IA+  +  YF
Sbjct: 280 TVPPGMTAREA--LAWHAWEGARGRYPAG-VPEKVQAQIVR-----ELELIAQCGYEMYF 331

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           L V D +++A+   I +  GRGS A SV  + L IT +DP +  LLFERF++ +R   PD
Sbjct: 332 LTVHDIVRYARSQGI-LCQGRGSAANSVVCFCLGITAVDPEQSHLLFERFISKERREPPD 390

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D+DF  DRR+EVI+Y+ +KYG ER A      + + ++ALRDVG+AL +    +D   K
Sbjct: 391 IDVDFEHDRREEVIQYIYSKYGRERAAIAAVVTTYRTRSALRDVGKALGVAPVLIDAFAK 450

Query: 478 -------LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
                    P D    ++ QA+      R+A          L+++ +L+G  RH S H  
Sbjct: 451 DHQWFDDAFPADRLRQMA-QALGVPLSARQAAF-------WLDLAGQLKGFPRHLSQHVG 502

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL- 589
           G V+ +  L++LVP+         V Q++   ++  GL+K D L L  L+ L++ LD   
Sbjct: 503 GFVLTEGKLTRLVPVEPASMEGRSVIQWDKDDLDAMGLLKVDVLALGMLSALRRCLDLRS 562

Query: 590 AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
           A RG + +L+ IP +D  TY ++    T+G+FQ+ES      L  +QP    D++  V++
Sbjct: 563 ALRGEQWELADIPREDAATYDMVCAADTVGVFQIESRAQMSMLPRLQPRVFYDLVVEVAI 622

Query: 650 YRPGPIDNIVVY------NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            RPGPI   +V+        R+ G+  ++    L    L+ T G+ I+QEQVMQIA + +
Sbjct: 623 VRPGPIQGGMVHPYLQARERRRRGQPLVLEKEEL-GAALERTLGIPIFQEQVMQIAMIAA 681

Query: 704 GYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +S +EAD LRR+M   K    +   +ER + G   NG  +  A  IF+ +  F +YGF 
Sbjct: 682 RFSAAEADALRRSMAAWKRTGGVHHFEERLVEGMVANGYERGFAERIFQQMLGFGEYGFP 741

Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           +SHA ++A+++Y ++W+K H P  FLAA +  +        +  QDAR+  ++++P  ++
Sbjct: 742 ESHAHSFALLAYDSSWLKRHEPACFLAALLNSQPMGFYPPAQLVQDARRHGVRVLP--ID 799

Query: 823 TPCVDFKVGDNRIYYSLAAIKGV 845
               D+   D  I   LA I GV
Sbjct: 800 VTASDW---DCTIEGPLAPIAGV 819


>gi|221640619|ref|YP_002526881.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides KD131]
 gi|221161400|gb|ACM02380.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides KD131]
          Length = 928

 Score =  306 bits (785), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 263/928 (28%), Positives = 426/928 (45%), Gaps = 88/928 (9%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL----EFSQKACAAG 66
           FV L   S+++ L GA     ++ + A+   PA+AI D N++   +    E  + A   G
Sbjct: 3   FVELSATSNFTFLTGASHPEELMRRAASLGLPALAIADENSVAGIVRAYGEAKEIARETG 62

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
             P +     I +++ +              S+ +L      + RL  L++ +      K
Sbjct: 63  SAPRLIPAARIVVREGM--------------SVTVLPRDRAAWGRLCRLLT-LGRRAAPK 107

Query: 127 QSVRICLSWL--QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            S  +  + L     G E L+     SSG           Q    RL         R+ +
Sbjct: 108 GSCDLGFADLLAHVEGQEMLLHPPARSSG---------GWQTLAARLAAACP---GRVAL 155

Query: 185 NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ- 242
            L  H  G DR R  +   LA    +P VA+   +          DVL A+     V + 
Sbjct: 156 ILAPHYAGQDRVRFERQALLAARLGIPTVASGLPILHHGARRRLADVLTAIRLGCRVDEL 215

Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---EKE 299
             R  V  +  L++ +EM+ ++    EA+  + EIA R  F L       P  I   E  
Sbjct: 216 GRRALVNGEQRLRSEAEMLRLYPGHEEAVFRSAEIAGRLDFCLSELRYEYPSEISRGESP 275

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            D + +     L  +  AG+  ++A    A+  H          EL +I ++ +  YFL 
Sbjct: 276 ADRLARLTREGLVWRFPAGVPEKIA----AQARH----------ELELIGKLGYEPYFLT 321

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V D +++A+   I +  GRGS A S+  YAL +T +DP   +++FERF++  R   PD D
Sbjct: 322 VNDIVRFARDRGI-LCQGRGSAANSIVCYALGVTSVDPEVGTMVFERFVSEARNEPPDID 380

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           +DF  +RR+EVI+++ ++YG +R     T    + K A+R+VGRA+ +    +  +   I
Sbjct: 381 VDFEHERREEVIQHIYSRYGRDRAGLCATVIHYRGKRAVREVGRAMGLSEDTLTAMASQI 440

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGD 536
                 P +L     + R RE  L DP+  RL   L++  +++G  RH S H  G VI +
Sbjct: 441 WGW-GGPGALT----ERRLREIGL-DPNDRRLWLALQLIDEIQGFPRHLSQHVGGFVITE 494

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK 595
             L +LVP+         V  ++   I+  G++K D L L  LT ++K+ D + +     
Sbjct: 495 GRLDELVPIENAAMEGRTVICWDKDDIDMLGILKVDVLALGMLTCIRKAFDLIESHHHTS 554

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             L+ +P DD +TY +L    +LG+FQ+ES      L  M+P C  D++  V++ RPGPI
Sbjct: 555 YTLATLPRDDSQTYDMLCRADSLGVFQVESRAQMNFLPRMRPRCFYDLVVQVAIIRPGPI 614

Query: 656 --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             D +  Y  R+NG+E        +  +L +T GV ++QEQ MQIA + + +S  EAD L
Sbjct: 615 QGDMVHPYIRRRNGREDPHLPSDALGKVLGKTLGVPLFQEQAMQIAIIGANFSPEEADRL 674

Query: 714 RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           RRA+   K    + + KERF++G   NG  K  A   F  +  F  YGF +SHAA++A++
Sbjct: 675 RRALATFKKHGNVTELKERFMNGMLANGYDKDFATRCFSQIEGFGSYGFPESHAASFALL 734

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            Y +AW+K H+P  F  A +  +        +  +DAR   + ++PP +N    D  +  
Sbjct: 735 VYASAWIKCHHPGIFACALLNAQPMGFYAPAQIVRDARAHGVIVLPPCINASLWDNVMER 794

Query: 833 NR-----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN-RRVLESLV 886
           +R     +      IKGV    A+ I+ A  +  + ++ED   R         R+ E+  
Sbjct: 795 DREGRLALRLGFRQIKGVAEEEAQWIVAARGNG-YRAVEDIWRRAGVPPATVTRLAEA-- 851

Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQW 914
                DCF         +L   ++ AQW
Sbjct: 852 -----DCFA--------ALGLTRREAQW 866


>gi|254391191|ref|ZP_05006397.1| DNA polymerase III alpha subunit [Streptomyces clavuligerus ATCC
            27064]
 gi|294813650|ref|ZP_06772293.1| DNA polymerase III alpha subunit [Streptomyces clavuligerus ATCC
            27064]
 gi|326441944|ref|ZP_08216678.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC
            27064]
 gi|197704884|gb|EDY50696.1| DNA polymerase III alpha subunit [Streptomyces clavuligerus ATCC
            27064]
 gi|294326249|gb|EFG07892.1| DNA polymerase III alpha subunit [Streptomyces clavuligerus ATCC
            27064]
          Length = 1213

 Score =  306 bits (785), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 289/1083 (26%), Positives = 473/1083 (43%), Gaps = 82/1083 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL V + YS   GA     ++ + A      +A+TD + +   + F++ A   G++ 
Sbjct: 3    GFAHLHVATGYSARYGASHPRELVARAAERGMEVLAVTDRDGVAGVVRFAKAARGGGVRA 62

Query: 70   IIGCQLDIDM-----QDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLD 123
            + G  + ++      +  ++   +G       P  I LL     G+  L  LVS  +   
Sbjct: 63   VFGVDMGVEAFVPGREAVVRAPVRGGAYVREPPLRITLLARDPRGWAELCRLVSAAHARP 122

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                 V I           GL +L G  S P  RA      + A + L  ++ L GD L 
Sbjct: 123  VDGHPV-IPREAFTAAADTGLTVLLGPLSEPA-RALAAGRDESAARLLTAWRALAGDGLR 180

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHE-----LPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +    H        S  +            +P+V TN   +   E +   DVL A   + 
Sbjct: 181  LEAVHHGRPGAGPGSLRLAARTLLLGDRLGIPVVLTNAVRYADPEQHRLADVLDA---AR 237

Query: 239  VVSQKDRPRV-TPDHYLKNRSEMVSIFSDL-------PEA----LENTVEIARRCSFILQ 286
            ++   DR R+ + + +LK+ + M +    +       PE     +  T   A  C     
Sbjct: 238  LLRPLDRDRLDSGERWLKDPAAMRTAAGLIAGAAGLGPERADRLITETGATAEECVLDPG 297

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFEL 345
                +  R + +      ++  + +R      L  R A G + +G     + R+RL  EL
Sbjct: 298  TGLGLGRRHLPEPWAVGARDAADAVRV-----LRGRCAAGLVRRGLDRDPEARRRLAQEL 352

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             +IA +    YFL VA  +   ++  I V   RGSGAGS+  + L I   +PL   LLFE
Sbjct: 353  ALIAELGLDTYFLTVAQVVADIRERGIRVA-ARGSGAGSMVNHVLGIATANPLDHRLLFE 411

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFL+  R  +PD D+D    RR E    +  ++G ERVA      + +A+ ALRD   AL
Sbjct: 412  RFLSRQRTDLPDIDLDVESARRLEAYDRIIERFGRERVALAAMPETYRARHALRDTALAL 471

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
             +  ++ DR+ K  P+  A  ++  A+AD    R    A      LL +++ L+ L R  
Sbjct: 472  GIAPAEADRMAKAFPHIRARDIT-AALADLPELRGLAAASAPYRLLLTLAEGLDALPRGI 530

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            + H  G++IGD  L   +P+        P+ Q +   IE  GLIK D LG++T + +  +
Sbjct: 531  AMHPCGVIIGDASLRARLPVQPTPTGGYPMVQADKHDIEDLGLIKLDVLGVRTQSAMAHA 590

Query: 586  LDFLAQ-RGVKVDLS---LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
               + +  G ++DL     +P DD   + ++    TLG+FQLES G    L  MQP    
Sbjct: 591  TAEIERVTGRRIDLDDPRQVPLDDPFAFRMIQASDTLGMFQLESPGQMDLLARMQPRDPR 650

Query: 642  DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            D+IA +SL+RPGP+   +   Y   ++G       HP + P+L +T GV+I+ EQ+++I 
Sbjct: 651  DVIADISLFRPGPVAGGMPERYVAARHGGPPSYP-HPDLVPVLSDTYGVVIWHEQIIEIL 709

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            ++L+G     AD +RRA+G + +  +   +E F   A+  G S  +   ++  +  F  Y
Sbjct: 710  RVLTGCDRGYADHVRRALGDRAR--LPGIREWFHRRAAARGYSPAVRDEVWGTVESFGAY 767

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK-FCQDARQFNIQIMP 818
            GF ++HA A+AV + QTAW+K H+P    A    LE D     K+    DAR+ +I ++P
Sbjct: 768  GFCRAHAVAFAVPALQTAWLKAHHPAALYAG--LLEHDPGMWPKRVIVADARRHHIAVLP 825

Query: 819  PSVNT--PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
              +N   P    +   +  +    A+  V   +   +   +A +P+ SL D   R     
Sbjct: 826  VDINRSRPTHTVERAPDGTWGVRLALSDVHGISRAEVTRIAAGQPYISLTDLWRRAHP-- 883

Query: 877  LNRRVLESLVFAGALDCF---GYSRMQLLQSLDNIQKYAQWVEKNRTNK-HENIFAHEKG 932
              R   E L   GAL      G +R  LL  +  + +  Q   ++R +  H+    H   
Sbjct: 884  -TRPTAERLADIGALSPLAGDGVTRRDLLLRIAELHRDHQRHREHRRHPGHQG--GHRGR 940

Query: 933  TFSD-KITLEKF------SVENSSVRFEN----------------EQRVLGFYFSGHPLD 969
            T  D ++T E        +  N+    EN                E RVLG   S H +D
Sbjct: 941  TAGDGQLTFENVPDNVPDNAPNNVPYGENGPDGLPEMTGREALDAELRVLGIDVSRHLMD 1000

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              + +LR++G            G+++ +A +  + Q      G RI +VT  + +   + 
Sbjct: 1001 HQRRLLRELGATDARRLGGLRAGDSVLVAGVRAATQTPPIPSGKRIIFVTLDDGSGLVDL 1060

Query: 1030 NFF 1032
             FF
Sbjct: 1061 AFF 1063


>gi|77464705|ref|YP_354209.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides 2.4.1]
 gi|77389123|gb|ABA80308.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides 2.4.1]
          Length = 940

 Score =  306 bits (785), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 263/928 (28%), Positives = 426/928 (45%), Gaps = 88/928 (9%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL----EFSQKACAAG 66
           FV L   S+++ L GA     ++ + A+   PA+AI D N++   +    E  + A   G
Sbjct: 15  FVELSATSNFTFLTGASHPEELMRRAASLGLPALAIADENSVAGIVRAYGEAKEIARETG 74

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
             P +     I +++ +              S+ +L      + RL  L++ +      K
Sbjct: 75  SAPRLIPAARIVVREGM--------------SVTVLPRDRAAWGRLCRLLT-LGRRAAPK 119

Query: 127 QSVRICLSWL--QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            S  +  + L     G E L+     SSG           Q    RL         R+ +
Sbjct: 120 GSCDLGFADLLAHAEGQEMLLHPPARSSG---------GWQTLAARLAAACP---GRVAL 167

Query: 185 NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ- 242
            L  H  G DR R  +   LA    +P VA+   +          DVL A+     V + 
Sbjct: 168 ILAPHYAGQDRVRFERQALLAARLGIPTVASGLPILHHGARRRLADVLTAIRLGCRVDEL 227

Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---EKE 299
             R  V  +  L++ +EM+ ++    EA+  + EIA R  F L       P  I   E  
Sbjct: 228 GRRALVNGEQRLRSEAEMLRLYPGHEEAVFRSAEIAGRLDFCLSELRYEYPSEISKGESP 287

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            D + +     L  +  AG+  ++A    A+  H          EL +I ++ +  YFL 
Sbjct: 288 ADRLARLTREGLVWRFPAGVPEKIA----AQARH----------ELELIGKLGYEPYFLT 333

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V D +++A+   I +  GRGS A S+  YAL +T +DP   +++FERF++  R   PD D
Sbjct: 334 VNDIVRFARDRGI-LCQGRGSAANSIVCYALGVTSVDPEVGTMVFERFVSEARNEPPDID 392

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           +DF  +RR+EVI+++ ++YG +R     T    + K A+R+VGRA+ +    +  +   I
Sbjct: 393 VDFEHERREEVIQHIYSRYGRDRAGLCATVIHYRGKRAVREVGRAMGLSEDTLTAMASQI 452

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGD 536
                 P +L     + R RE  L DP+  RL   L++  +++G  RH S H  G VI +
Sbjct: 453 WGW-GGPGALT----ERRLREIGL-DPNDRRLWLALQLIDEIQGFPRHLSQHVGGFVITE 506

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK 595
             L +LVP+         V  ++   I+  G++K D L L  LT ++K+ D + +     
Sbjct: 507 GRLDELVPIENAAMEGRTVICWDKDDIDMLGILKVDVLALGMLTCIRKAFDLIESHHHTS 566

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             L+ +P DD +TY +L    +LG+FQ+ES      L  M+P C  D++  V++ RPGPI
Sbjct: 567 YTLATLPRDDSQTYDMLCRADSLGVFQVESRAQMNFLPRMRPRCFYDLVVQVAIIRPGPI 626

Query: 656 --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             D +  Y  R+NG+E        +  +L +T GV ++QEQ MQIA + + +S  EAD L
Sbjct: 627 QGDMVHPYIRRRNGQEDPHLPSDALGKVLGKTLGVPLFQEQAMQIAIIGANFSPEEADRL 686

Query: 714 RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           RRA+   K    + + KERF++G   NG  K  A   F  +  F  YGF +SHAA++A++
Sbjct: 687 RRALATFKKHGNVTELKERFMNGMLANGYDKDFATRCFSQIEGFGSYGFPESHAASFALL 746

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            Y +AW+K H+P  F  A +  +        +  +DAR   + ++PP +N    D  +  
Sbjct: 747 VYASAWIKCHHPGIFACALLNAQPMGFYAPAQIVRDARAHGVIVLPPCINASLWDNVMER 806

Query: 833 NR-----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN-RRVLESLV 886
           +R     +      IKGV    A+ I+ A  +  + ++ED   R         R+ E+  
Sbjct: 807 DREGRLALRLGFRQIKGVAEEEAQWIVAARGNG-YRAVEDIWRRAGVPPATVTRLAEA-- 863

Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQW 914
                DCF         +L   ++ AQW
Sbjct: 864 -----DCFA--------ALGLTRREAQW 878


>gi|222099186|ref|YP_002533754.1| DNA polymerase III subunit alpha [Thermotoga neapolitana DSM 4359]
 gi|221571576|gb|ACM22388.1| DNA polymerase III subunit alpha [Thermotoga neapolitana DSM 4359]
          Length = 831

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 194/575 (33%), Positives = 308/575 (53%), Gaps = 82/575 (14%)

Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
            + Y +RL+ EL  I +  FS Y  +V + ++ A+K  I VGPGRGS  GS+  +   IT
Sbjct: 174 GEKYLERLERELETIEKKGFSSYIYLVEEIVKTARKLGIKVGPGRGSAVGSLVVFLCGIT 233

Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
           +IDPL+  LLFERF+N +R+  PD D+D    RR E+++ +  ++    V Q+ TFG+L 
Sbjct: 234 EIDPLKHDLLFERFINEERIEPPDIDVDVEDRRRKELLKELSKRF---YVYQVSTFGNL- 289

Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
           A+ +L+++                              I   SR            R+ E
Sbjct: 290 AERSLKNL------------------------------IGSTSR------------RMYE 307

Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
           I   L GL  H S HAAG+VI +RPL    P+   +  ++PVT ++M  +++ G++K D 
Sbjct: 308 I---LYGLPHHPSVHAAGVVISERPL----PIPFRLEEEIPVTDYDMYDLDRIGVVKIDI 360

Query: 574 LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
           LGLKTL+ ++   DF        +     + D +TYH+++   TLG+FQLE    R+   
Sbjct: 361 LGLKTLSFVK---DF--------NRKTFDYSDEKTYHIISKGKTLGVFQLEGLQARRLCR 409

Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            + P  +E++  L++L RPGP+ + +  +Y + K+  E +  + P       ET+GV+IY
Sbjct: 410 KISPGNLEELSVLLALNRPGPLKSGIDSMYVSSKSVPESLKKLFP-------ETRGVVIY 462

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QEQ+M +A +L+G S +EADVLRRA+ KK KE+M+   ER   G  + G+       I +
Sbjct: 463 QEQIMNLA-MLAGLSGAEADVLRRAIAKKEKEKMEPLLERLKEGLVEKGVEDVDL--ILK 519

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
           +L  F+ Y FNKSH+ AYA +S+QTA++K H+  EF        + + EK+    Q+ R 
Sbjct: 520 ILLNFSSYAFNKSHSVAYAHLSFQTAYLKVHFFEEFFKRYFEYNIGDSEKVFLAVQELRS 579

Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              ++ PP+VN         +N++Y  L A+KGVG +    + E   ++P DS+      
Sbjct: 580 EGYEVFPPNVNVSGKYPVFRENKVYLPLTAVKGVGESM---VEEIEKNRPIDSVRRLQ-- 634

Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            + + + R VLE+++ AGA D    SR Q  + L+
Sbjct: 635 -EVRGIPRNVLENMISAGAFDELYESRAQAFEELN 668


>gi|225851611|ref|YP_002731844.1| error-prone DNA polymerase [Brucella melitensis ATCC 23457]
 gi|256264881|ref|ZP_05467413.1| error-prone DNA polymerase [Brucella melitensis bv. 2 str. 63/9]
 gi|225639976|gb|ACN99889.1| DNA polymerase III, alpha subunit [Brucella melitensis ATCC 23457]
 gi|263095335|gb|EEZ18962.1| error-prone DNA polymerase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408081|gb|ADZ65146.1| error-prone DNA polymerase [Brucella melitensis M28]
 gi|326537797|gb|ADZ86012.1| DNA polymerase III, alpha subunit [Brucella melitensis M5-90]
          Length = 1077

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 247/865 (28%), Positives = 405/865 (46%), Gaps = 87/865 (10%)

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
            H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R   
Sbjct: 162  HQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLE 221

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILP-RFIEKEC 300
               + +LK   EMV +F D PEA+  T +     +F L          PI P +  ++  
Sbjct: 222  KNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPGKTAQQHL 281

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D+  E    +R+     +  ++ QG I K             EL +IAR+++  YFL V
Sbjct: 282  YDLVWE--GAVRHYGADMIPPKV-QGLINK-------------ELALIARLEYEPYFLTV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +  A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+
Sbjct: 326  YDIVTHAREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDV 384

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   + 
Sbjct: 385  DFEHERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVW 444

Query: 481  NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                  +  Q I      R+A L   +P + R +E++  L G  RH S H  G V+    
Sbjct: 445  GLSGGGIDRQHI------RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDR 498

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------ 592
            L + VP+           +++   I++ GL+K D L L  LT ++K+ D + Q       
Sbjct: 499  LDETVPIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYG 558

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G K+ L+ +P  D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 559  GEKLTLASLPRKDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRP 618

Query: 653  GPI--DNIVVYNNRKNGKE--KIVSIHPLIDP------MLKETQGVIIYQEQVMQIAQLL 702
            GPI  D +  Y  R++G+E   + S  P   P      +L +T+GV ++QEQ M+IA   
Sbjct: 619  GPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEA 678

Query: 703  SGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            + ++  EA+ LRRAM    K   +   +++ I G    G  +T A N F  +  F +YGF
Sbjct: 679  AKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGF 738

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  V
Sbjct: 739  PESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDV 798

Query: 822  NTPCVDFKVGDN------RIYYSLA-AIKGVGTTTAR--HIMEASADKPFDSLEDFCSRV 872
            N     F   DN       ++ +L    + +   + R   ++ A   +P+ ++ED   R+
Sbjct: 799  N-----FSQWDNILEETPDVHLALRLGFRQIDGFSKRDTELLIADRQEPYRTIEDMHRRL 853

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----- 927
               +L+RR    L  A   D FG        SLD  ++ A W  +   N    +      
Sbjct: 854  ---RLDRRAFTLLADA---DAFG--------SLDIDRRAALWAVRRLPNDETLLLFRAAA 899

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
            A E          E  + E+    +E  +        GHPL   +  L   G+       
Sbjct: 900  ASELAQEPRTKLPEMAASEHVIADYETTR----LSLKGHPLQYLREGLAAEGVSTCRAVQ 955

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKG 1012
                G  +++A +V  +Q+  + KG
Sbjct: 956  EGADGRRMKVAGVVTVRQRPGSAKG 980


>gi|225626616|ref|ZP_03784655.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo]
 gi|225618273|gb|EEH15316.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo]
          Length = 1078

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 245/861 (28%), Positives = 403/861 (46%), Gaps = 79/861 (9%)

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
            H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R   
Sbjct: 163  HQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLE 222

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILP-RFIEKEC 300
               + +LK   EMV +F D PEA+  T +     +F L          PI P +  ++  
Sbjct: 223  KNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPGKTAQQHL 282

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D+  E     R+     +  ++ QG I K             EL +IAR+++  YFL V
Sbjct: 283  YDLVWE--GAARHYGADMIPPKV-QGLINK-------------ELALIARLEYEPYFLTV 326

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +  A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+
Sbjct: 327  YDIVTHAREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDV 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   + 
Sbjct: 386  DFEHERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVW 445

Query: 481  NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                  +  Q I      R+A L   +P + R +E++  L G  RH S H  G V+    
Sbjct: 446  GLSGGGIDRQHI------RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDR 499

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------ 592
            L + VP+           +++   I++ GL+K D L L  LT ++K+ D + Q       
Sbjct: 500  LDETVPIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYG 559

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G K+ L+ +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 560  GEKLTLASLPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRP 619

Query: 653  GPI--DNIVVYNNRKNGKE--KIVSIHPLIDP------MLKETQGVIIYQEQVMQIAQLL 702
            GPI  D +  Y  R++G+E   + S  P   P      +L +T+GV ++QEQ M+IA   
Sbjct: 620  GPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEA 679

Query: 703  SGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            + ++  EA+ LRRAM    K   +   +++ I G    G  +T A N F  +  F +YGF
Sbjct: 680  AKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGF 739

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  V
Sbjct: 740  PESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDV 799

Query: 822  NTPCVDFKVGDN------RIYYSLA-AIKGVGTTTAR--HIMEASADKPFDSLEDFCSRV 872
            N     F   DN       ++ +L    + +   + R   ++ A   +P+ ++ED   R+
Sbjct: 800  N-----FSQWDNILEETPDVHLALRLGFRQIDGFSKRDTELLIADRQEPYRTIEDMHRRL 854

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEK 931
               +L+RR    L  A   D FG        SLD  ++ A W  +   N     +F    
Sbjct: 855  ---RLDRRAFTLLADA---DAFG--------SLDIDRRAALWAVRRLPNDETLPLFRAAA 900

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
             +   +    K     +S     +         GHPL   +  L   G+           
Sbjct: 901  ASELAQEPRTKLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQKGAD 960

Query: 992  GNNIRLAAMVVSKQQKKTRKG 1012
            G  +++A +V  +Q+  + KG
Sbjct: 961  GRRMKVAGVVTVRQRPGSAKG 981


>gi|256060212|ref|ZP_05450388.1| error-prone DNA polymerase [Brucella neotomae 5K33]
 gi|261324186|ref|ZP_05963383.1| error-prone DNA polymerase [Brucella neotomae 5K33]
 gi|261300166|gb|EEY03663.1| error-prone DNA polymerase [Brucella neotomae 5K33]
          Length = 1077

 Score =  306 bits (783), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 245/861 (28%), Positives = 404/861 (46%), Gaps = 79/861 (9%)

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
            H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R   
Sbjct: 162  HQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLE 221

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILP-RFIEKEC 300
               + +LK   EMV +F D PEA+  T +     +F L          PI P +  ++  
Sbjct: 222  KNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPGKTAQQHL 281

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D+  E     R+     +  ++ QG I K             EL +IAR+++  YFL V
Sbjct: 282  YDLVWE--GAARHYGADMIPPKV-QGLINK-------------ELALIARLEYEPYFLTV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +  A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+
Sbjct: 326  YDIVTHAREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDV 384

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   + 
Sbjct: 385  DFEHERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVW 444

Query: 481  NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +     +  Q I      R+A L   +P + R +E++  L G  RH S H  G V+    
Sbjct: 445  SLSGGGIDRQHI------RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDR 498

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------ 592
            L + VP+           +++   I++ GL+K D L L  LT ++K+ D + Q       
Sbjct: 499  LDETVPIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYG 558

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G K+ L+ +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 559  GEKLTLASLPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRP 618

Query: 653  GPI--DNIVVYNNRKNGKE--KIVSIHPLIDP------MLKETQGVIIYQEQVMQIAQLL 702
            GPI  D +  Y  R++G+E   + S  P   P      +L +T+GV ++QEQ M+IA   
Sbjct: 619  GPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEA 678

Query: 703  SGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            + ++  EA+ LRRAM    K   +   +++ I G    G  +T A N F  +  F +YGF
Sbjct: 679  AKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGF 738

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  V
Sbjct: 739  PESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDV 798

Query: 822  NTPCVDFKVGDN------RIYYSLA-AIKGVGTTTAR--HIMEASADKPFDSLEDFCSRV 872
            N     F   DN       ++ +L    + +   + R   ++ A   +P+ ++ED   R+
Sbjct: 799  N-----FSQWDNILEETPDVHLALRLGFRQIDGFSKRDTELLIADRQEPYRTIEDMHRRL 853

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEK 931
               +L+RR    L  A   D FG        SLD  ++ A W  +   N     +F    
Sbjct: 854  ---RLDRRAFTLLADA---DAFG--------SLDIDRRAALWAVRRLPNDETLPLFRAAA 899

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
             +   +    K     +S     +         GHPL   +  L   G+           
Sbjct: 900  ASELAQEPRTKLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGAD 959

Query: 992  GNNIRLAAMVVSKQQKKTRKG 1012
            G  +++A +V  +Q+  + KG
Sbjct: 960  GRRMKVAGVVTVRQRPGSAKG 980


>gi|260169652|ref|ZP_05756463.1| error-prone DNA polymerase [Brucella sp. F5/99]
 gi|261759184|ref|ZP_06002893.1| error-prone DNA polymerase [Brucella sp. F5/99]
 gi|261739168|gb|EEY27164.1| error-prone DNA polymerase [Brucella sp. F5/99]
          Length = 1077

 Score =  306 bits (783), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 245/861 (28%), Positives = 403/861 (46%), Gaps = 79/861 (9%)

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
            H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R   
Sbjct: 162  HQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLE 221

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILP-RFIEKEC 300
               + +LK   EMV +F D PEA+  T +     +F L          PI P +  ++  
Sbjct: 222  KNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPGKTAQQHL 281

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D+  E     R+     +  ++ QG I K             EL +IAR+++  YFL V
Sbjct: 282  YDLVWE--GAARHYGADMIPPKV-QGLINK-------------ELALIARLEYEPYFLTV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +  A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+
Sbjct: 326  YDIVTHAREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDV 384

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   + 
Sbjct: 385  DFEHERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVW 444

Query: 481  NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                  +  Q I      R+A L   +P + R +E++  L G  RH S H  G V+    
Sbjct: 445  GLSGGGIDRQHI------RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDR 498

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------ 592
            L + VP+           +++   I++ GL+K D L L  LT ++K+ D + Q       
Sbjct: 499  LDETVPIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYG 558

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G K+ L+ +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 559  GEKLTLASLPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRP 618

Query: 653  GPI--DNIVVYNNRKNGKE--KIVSIHPLIDP------MLKETQGVIIYQEQVMQIAQLL 702
            GPI  D +  Y  R++G+E   + S  P   P      +L +T+GV ++QEQ M+IA   
Sbjct: 619  GPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEA 678

Query: 703  SGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            + ++  EA+ LRRAM    K   +   +++ I G    G  +T A N F  +  F +YGF
Sbjct: 679  AKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGF 738

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  V
Sbjct: 739  PESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDV 798

Query: 822  NTPCVDFKVGDN------RIYYSLA-AIKGVGTTTAR--HIMEASADKPFDSLEDFCSRV 872
            N     F   DN       ++ +L    + +   + R   ++ A   +P+ ++ED   R+
Sbjct: 799  N-----FSQWDNILEETPDVHLALRLGFRQIDGFSKRDTELLIADRQEPYRTIEDMHRRL 853

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEK 931
               +L+RR    L  A   D FG        SLD  ++ A W  +   N     +F    
Sbjct: 854  ---RLDRRAFTLLADA---DAFG--------SLDIDRRAALWAVRRLPNDETLPLFRAAA 899

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
             +   +    K     +S     +         GHPL   +  L   G+           
Sbjct: 900  ASELAQEPRTKLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQKGAD 959

Query: 992  GNNIRLAAMVVSKQQKKTRKG 1012
            G  +++A +V  +Q+  + KG
Sbjct: 960  GRRMKVAGVVTVRQRPGSAKG 980


>gi|254700882|ref|ZP_05162710.1| error-prone DNA polymerase [Brucella suis bv. 5 str. 513]
 gi|254707232|ref|ZP_05169060.1| error-prone DNA polymerase [Brucella pinnipedialis M163/99/10]
 gi|254709225|ref|ZP_05171036.1| error-prone DNA polymerase [Brucella pinnipedialis B2/94]
 gi|254713353|ref|ZP_05175164.1| error-prone DNA polymerase [Brucella ceti M644/93/1]
 gi|256030748|ref|ZP_05444362.1| error-prone DNA polymerase [Brucella pinnipedialis M292/94/1]
 gi|261314714|ref|ZP_05953911.1| error-prone DNA polymerase [Brucella pinnipedialis M163/99/10]
 gi|261316728|ref|ZP_05955925.1| DNA polymerase III alpha subunit [Brucella pinnipedialis B2/94]
 gi|261321081|ref|ZP_05960278.1| error-prone DNA polymerase [Brucella ceti M644/93/1]
 gi|261751394|ref|ZP_05995103.1| error-prone DNA polymerase [Brucella suis bv. 5 str. 513]
 gi|265987799|ref|ZP_06100356.1| error-prone DNA polymerase [Brucella pinnipedialis M292/94/1]
 gi|261293771|gb|EEX97267.1| error-prone DNA polymerase [Brucella ceti M644/93/1]
 gi|261295951|gb|EEX99447.1| DNA polymerase III alpha subunit [Brucella pinnipedialis B2/94]
 gi|261303740|gb|EEY07237.1| error-prone DNA polymerase [Brucella pinnipedialis M163/99/10]
 gi|261741147|gb|EEY29073.1| error-prone DNA polymerase [Brucella suis bv. 5 str. 513]
 gi|264659996|gb|EEZ30257.1| error-prone DNA polymerase [Brucella pinnipedialis M292/94/1]
          Length = 1077

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 245/861 (28%), Positives = 403/861 (46%), Gaps = 79/861 (9%)

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
            H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R   
Sbjct: 162  HQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLE 221

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILP-RFIEKEC 300
               + +LK   EMV +F D PEA+  T +     +F L          PI P +  ++  
Sbjct: 222  KNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPGKTAQQHL 281

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D+  E     R+     +  ++ QG I K             EL +IAR+++  YFL V
Sbjct: 282  YDLVWE--GAARHYGADMIPPKV-QGLINK-------------ELALIARLEYEPYFLTV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +  A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+
Sbjct: 326  YDIVTHAREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDV 384

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   + 
Sbjct: 385  DFEHERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVW 444

Query: 481  NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                  +  Q I      R+A L   +P + R +E++  L G  RH S H  G V+    
Sbjct: 445  GLSGGGIDRQHI------RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDR 498

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------ 592
            L + VP+           +++   I++ GL+K D L L  LT ++K+ D + Q       
Sbjct: 499  LDETVPIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYG 558

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G K+ L+ +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 559  GEKLTLASLPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRP 618

Query: 653  GPI--DNIVVYNNRKNGKE--KIVSIHPLIDP------MLKETQGVIIYQEQVMQIAQLL 702
            GPI  D +  Y  R++G+E   + S  P   P      +L +T+GV ++QEQ M+IA   
Sbjct: 619  GPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEA 678

Query: 703  SGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            + ++  EA+ LRRAM    K   +   +++ I G    G  +T A N F  +  F +YGF
Sbjct: 679  AKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGF 738

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  V
Sbjct: 739  PESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDV 798

Query: 822  NTPCVDFKVGDN------RIYYSLA-AIKGVGTTTAR--HIMEASADKPFDSLEDFCSRV 872
            N     F   DN       ++ +L    + +   + R   ++ A   +P+ ++ED   R+
Sbjct: 799  N-----FSQWDNILEETPDVHLALRLGFRQIDGFSKRDTELLIADRQEPYRTIEDMHRRL 853

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEK 931
               +L+RR    L  A   D FG        SLD  ++ A W  +   N     +F    
Sbjct: 854  ---RLDRRAFTLLADA---DAFG--------SLDIDRRAALWAVRRLPNDETLPLFRAAA 899

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
             +   +    K     +S     +         GHPL   +  L   G+           
Sbjct: 900  ASELAQEPRTKLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGAD 959

Query: 992  GNNIRLAAMVVSKQQKKTRKG 1012
            G  +++A +V  +Q+  + KG
Sbjct: 960  GRRMKVAGVVTVRQRPGSAKG 980


>gi|15966924|ref|NP_387277.1| putative DNA polymerase III alpha chain protein [Sinorhizobium
            meliloti 1021]
 gi|71151850|sp|Q92LA6|DNE21_RHIME RecName: Full=Error-prone DNA polymerase 1
 gi|15076197|emb|CAC47750.1| Putative DNA polymerase III alpha chain [Sinorhizobium meliloti 1021]
          Length = 1116

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 276/1040 (26%), Positives = 462/1040 (44%), Gaps = 94/1040 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +++S LEGA     ++          + I D N++   +    KA   G    
Sbjct: 7    FCELGARTNFSFLEGAAPAEEMVVFAKKAGLAGLGIADRNSVAGVVRAHAKAKVEGYP-- 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ-GKQSV 129
                     Q   ++     TP      I+       G+  L  L+S   L  + G  ++
Sbjct: 65   --------FQPGARLVFADGTP-----DILAYPKNRRGWGHLCRLLSAGNLRSKKGDCTL 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +      +     ++M   G   P          +  E  L T K+  G+RLY+ L  H
Sbjct: 112  HLADLLEWQEELLLIVMQGEGRPEP----------ESLEVLLGTLKEHAGNRLYLGLAPH 161

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPR 247
              G+DR+  + +  +A    + L+ATN++L+         DV+ ++  H  +       +
Sbjct: 162  YDGFDRHDFAVLAAIARKAGIGLLATNDALYHDPHYRPLADVVTSIREHVPIAGAGFLLQ 221

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + +LK   EM  +FSD PEA+ NT +  R  +F L   +   P     E  D +   
Sbjct: 222  KNAERHLKGPREMARLFSDYPEAIANTRKFFRELAFSLDELSHQYP----DENADGETPA 277

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+ LR     G   R  +G   K        +++D+EL +I   K+  YFL V   +++A
Sbjct: 278  ES-LRRLVAEGAAERYPEGVPEK------VMRQIDYELELIHDKKYEPYFLTVHKLVKFA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  NI +  GRGS A S   + L ITD+DP +F+LLF+RFL+ DR   PD D+DF  +RR
Sbjct: 331  RSVNI-LCQGRGSAANSSVCFCLGITDVDPQKFTLLFDRFLSKDRDEPPDIDVDFEHERR 389

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+   YG E         S ++++A R+V +A  +       L   I      P 
Sbjct: 390  EEVIQYIYRTYGKEHAGLTAAVISYRSRSAGREVAKAFGLSEDVQSALVSSIWGWGTSPF 449

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            +     + ++      ADP   R+L  +  L    RH S H  G VI    L ++VP+  
Sbjct: 450  T----EEQAKGAGLDAADPLTRRVLAYASLLMNFPRHLSQHVGGFVITRDRLDEVVPIMN 505

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDH 606
                D  + +++   +++  ++K D L L  LT L K    L A  G  + L+ I + DH
Sbjct: 506  TAMPDRYMIEWDKDDLDELKILKVDVLALGMLTCLAKGFKLLEAHYGEPITLAEI-YQDH 564

Query: 607  E--TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
                Y ++    T+G+FQ+ES      L  +QP  + D++  V++ RPGPI   +V  Y 
Sbjct: 565  RDAVYDMICRADTVGVFQIESRAQMSMLPRLQPREMYDLVIEVAIVRPGPIQGNMVHPYL 624

Query: 663  NRKNGK---EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             R+  +   E +V   P +  +L+ T GV ++QEQ MQIA   +G+S SEAD LRRAM  
Sbjct: 625  KRREAQRRGEAVVYPSPELKAVLERTLGVPLFQEQAMQIAITAAGFSPSEADRLRRAMAT 684

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    +   + + + G   N   +  A   F  +  F +YGF +SHAA++A + Y +AW
Sbjct: 685  FKRTGTIHTFERKMVEGMVANDYEREFAERCFNQIKGFGEYGFPESHAASFASLVYASAW 744

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF------KVGD 832
            +KT+YP  F AA +  +        +  +DAR+  ++++P  +N    D           
Sbjct: 745  LKTYYPDIFCAALLNAQPMGFYAPAQLVRDAREHGVRMLPVDINHSDWDALLEGEGAFDK 804

Query: 833  NRIYYSLAA-----------------IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            N ++   A+                 +KG+  T  + ++ A   + + S+ D   R    
Sbjct: 805  NAVHPRHASMREVIKTRKAVRLGFRLVKGLKQTDMKALV-ARRGEGYRSVHDLWLR---S 860

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
             L+R VLE L  A A    G  R   L ++  + + +  VE+        +F   +G  S
Sbjct: 861  GLSRSVLERLADADAFRSIGLDRRAALWAVKALDEQSA-VERL------PLF---EGAGS 910

Query: 936  DKITLE-KFSVEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
            D + +E K ++ +  +  +  ++ R L      HP+   +    + GI    +  AT  G
Sbjct: 911  DDLQIEPKVALPDMPAGEQVIHDYRTLTLSLKAHPVSFMREDFSRRGILRSRDLAATATG 970

Query: 993  NNIRLAAMVVSKQQKKTRKG 1012
              + +A +V+ +Q+  +  G
Sbjct: 971  RWVTVAGLVLVRQRPGSANG 990


>gi|300697395|ref|YP_003748056.1| DNA polymerase III subunit alpha [Ralstonia solanacearum CFBP2957]
 gi|299074119|emb|CBJ53663.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum CFBP2957]
          Length = 1081

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 282/1051 (26%), Positives = 463/1051 (44%), Gaps = 105/1051 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA   + ++ +  A    A+A+TD  ++   +     A  AG++
Sbjct: 18   PDYAELHCISNFTFLTGASHPHELVARAKALGYRALALTDECSVAGTVRAHVAAKEAGLK 77

Query: 69   PIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             I+G +  + D Q    +             +VLL    +GY  L E +++  L    K 
Sbjct: 78   LIVGSRFTVRDAQGEPWL------------RLVLLAQDIDGYGNLCECITQARLAAP-KG 124

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSG-PIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              R+           GL  L G      I    +    Q    + L  +++FGDRL + L
Sbjct: 125  DYRLLAD-DLAAPAAGLAHLRGMRHCLAILLPDYDPDPQRLRAQALWCRQVFGDRLSMAL 183

Query: 187  Q---RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +   RH   DR+R + V  +A   ++PLVAT +    S +    HDVL A+  S  +++ 
Sbjct: 184  ELPLRH-ADDRHRGT-VAAVAEQADVPLVATGDVAMHSRQRKPLHDVLTAIRLSRPIAEC 241

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAPILPRFIEKEC 300
                  + +  ++ R ++   +     A  L  +VE+A  C F L               
Sbjct: 242  GLELAPSAEQAMRTRMQLAFFYQGERGAPLLRRSVELAALCDFSL--------------- 286

Query: 301  DDIQKEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
            D+I+ E  +E           L  + +AG   R  +   AK       + ++  EL +IA
Sbjct: 287  DEIEYEYPHEVVPEGQTPAAYLHAEVMAGAARRYGKAIPAK------VQAQIAEELALIA 340

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             +++  +FL V D +++A+  +I +  GRGS A S   Y L IT++DP   + LF RFL+
Sbjct: 341  ELRYEPFFLTVYDVVRFARSRSI-LCQGRGSAANSAVCYCLGITEVDPQSGNTLFARFLS 399

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
              R   PD D+DF   RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL +  
Sbjct: 400  RARNEPPDIDVDFEHQRREEVIQYIYGKYGLTRTALAAALITYRTRSALRDVGRALGIDL 459

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
              ++++ K      A      A A  +  +      P V R   +  +L G  RH S H 
Sbjct: 460  GVIEQVAKA----QAWWDGQHAFAQHAGQQGLDPESPLVQRWAGLVGQLRGFPRHLSQHV 515

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G VI    LS+LVP+      D  V Q++   +E   L+K D L L  LT ++++LD L
Sbjct: 516  GGFVIAQGKLSRLVPIENAAMQDRRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDML 575

Query: 590  -------AQRGVKVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
                   A+ G    L++  +P +D +TY ++    T+G+FQ+ES   +  L  ++P   
Sbjct: 576  DALPGRRARYGASDKLAMQHLPDEDRDTYDMIGRAETIGVFQIESRAQQSMLPRLRPRTY 635

Query: 641  EDIIALVSLYRPGPIDNIVVY------NNRKNGKEKIVSI-HPLIDPMLKETQGVIIYQE 693
             D++  V++ RPGPI   +V+         +NG    V+   P +  +L+ T GV I+QE
Sbjct: 636  YDLVIQVAIVRPGPIQGGMVHPYLQRREAMRNGNPDCVTYPGPEVRAVLERTLGVPIFQE 695

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASK-NGISKTIAVNIFE 751
            QVM+IA    G++  EAD LRR M   K K  + + +ER +    +           +  
Sbjct: 696  QVMEIAMKAGGFTADEADRLRRDMAAWKRKGNLTEHQERLMKEMVEVRHYDPAFVEALCR 755

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  FA+YGF +SHAA +A ++Y ++++K H P  F AA +  +        +  Q+AR+
Sbjct: 756  QMEGFAEYGFPESHAAGFAKLAYVSSYLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARR 815

Query: 812  FNIQIMPPSVNTPCVDFKV--------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
              ++++P  V     D  +        G   I   L+ I+G+    A  I+ A A  PF 
Sbjct: 816  SRVRVLPADVTASAWDSTLHERPHGAGGQPDIRLGLSRIRGMRQPAAERIVAARAQAPFA 875

Query: 864  SLEDFCSRVDSKKLNRR-VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
            S+ED   R     L+R  +         L   G+ R  L Q+L   +         +   
Sbjct: 876  SVEDLAHRA---ALDRHDLSVLAAANALLPLAGHRRQALWQTLALQEPGQDHALLRQARP 932

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
             E   A    +  +++  +  S              LG     HPL + +P L +M    
Sbjct: 933  VEVPLALPAPSLGEEVVADYGS--------------LGLSLQSHPLSLLRPRLERMRFVT 978

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
                     G   R   +V  +Q+  T KG+
Sbjct: 979  AATLAGYRNGQLARACGIVTVRQRPGTAKGT 1009


>gi|83645018|ref|YP_433453.1| DNA polymerase III subunit alpha [Hahella chejuensis KCTC 2396]
 gi|123767471|sp|Q2SJZ6|DNAE2_HAHCH RecName: Full=Error-prone DNA polymerase
 gi|83633061|gb|ABC29028.1| DNA polymerase III, alpha subunit [Hahella chejuensis KCTC 2396]
          Length = 1032

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 252/886 (28%), Positives = 420/886 (47%), Gaps = 86/886 (9%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE-------FSQKA 62
           SFV L   S+YS L+GA     ++ +  A     +AITD  ++  A++         Q+A
Sbjct: 2   SFVELHCISNYSFLKGASHPEELVRQAIAQGYEGLAITDECSVAGAVKAWRELRRLRQEA 61

Query: 63  C-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
             A+  + IIG +   +                     V+L    + Y  L   ++    
Sbjct: 62  PEASAFKLIIGSEFHYEGN-----------------CFVVLAPHKKAYGELCRFITDCRR 104

Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
               K   +     L E   +GL++              +   Q  ++ +    K+F  R
Sbjct: 105 -KADKGDYQFSPDALNENIKQGLLL--------------WRPKQSDQEFIPALTKIFSGR 149

Query: 182 LYVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTV 239
           L++ L+     +   E +++Q L+  + LP+V++N     + E    HD L A+  + +V
Sbjct: 150 LWLLLELSLSEEDDSERELIQTLSSAYNLPVVSSNGVKMHAPERKRLHDALTAIRFNQSV 209

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            S KDR     ++YL+  +E+  I+      ++ ++ IA +C+F L       P+ +  E
Sbjct: 210 DSIKDRLAPNAENYLRPLNEIHEIYPSF--TIQESLRIAAKCAFELNEIRYQYPKEVVPE 267

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            DD        LR     G  +R  QG        ++    L+ ELN+I+ +++  YFL 
Sbjct: 268 GDD----PSAYLRRLTYEGAHLRYPQGI------PENVLATLEKELNIISELQYEYYFLT 317

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           + D + +AKK+ I +  GRGS A SV  Y L IT +DP R SLLFERF++  R   PD D
Sbjct: 318 IFDIVDYAKKSQI-LCQGRGSAANSVVCYCLGITAVDPTRASLLFERFISKGRDEPPDID 376

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC--- 476
           +DF   RR+EVI+Y+  +YG ER A   T  + + K+A+RD+G+AL +   Q++ +    
Sbjct: 377 VDFENARREEVIQYLYRRYGRERCAIAATVITYRPKSAIRDLGKALGVDLLQLESVIANY 436

Query: 477 --KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             +    D    V    ++ D+           +    E+  +L G  RH S H  G V+
Sbjct: 437 GWRYRGQDWIDEVITPQVSQDNHI---------LTCFKELLPELLGFPRHLSQHVGGFVL 487

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
              PL +LVP+      D  V Q++   +E  GL+K D L L  LT L+K   ++++  G
Sbjct: 488 SAGPLVELVPIENAAMEDRTVIQWDKDDLESLGLMKVDVLALGMLTALKKCTTYISEITG 547

Query: 594 VKVDLSLIPF-DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               L  IP  +D + Y +L    T+G+FQ+ES      L  ++P+   D++  V++ RP
Sbjct: 548 KTFSLESIPKEEDSQVYDMLQRADTVGLFQVESRAQMNMLPRLRPEKYYDLVVQVAIVRP 607

Query: 653 GPI--DNIVVYNNRKNGKEKIVSIH-PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
           GPI  D +  Y  R++  E    +  P + P+LK T GV I+QEQV+ IA + +G++  E
Sbjct: 608 GPIHGDMVHPYLRRRHNLEDPDDVPLPELKPILKRTFGVPIFQEQVIAIAIVGAGFTSEE 667

Query: 710 ADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
           A+ LRR+M   K +  M K  ++ I    K G+       +   +  F +YGF +SHAA+
Sbjct: 668 AEELRRSMASWKRRGHMGKLMDKLIINLLKKGVPLEYIQRLCRQIEGFGEYGFPESHAAS 727

Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT----- 823
           +A+++Y + W+K +YP  F  A +  +        +  QDA++  + ++P  +N      
Sbjct: 728 FALLAYHSGWLKYYYPSAFCCALLNSQPMGFYAPWQVIQDAQRHGVIVLPVDINNSYWEH 787

Query: 824 ---PCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
              P  D  K G  R+ + L  +KG+    A  I++   D+ F SL
Sbjct: 788 RLEPHSDNTKEGALRLGFRL--VKGLSEEAACSIIQHRTDEGFTSL 831


>gi|86137385|ref|ZP_01055962.1| DNA polymerase III, alpha subunit, putative [Roseobacter sp.
           MED193]
 gi|85825720|gb|EAQ45918.1| DNA polymerase III, alpha subunit, putative [Roseobacter sp.
           MED193]
          Length = 1130

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 241/850 (28%), Positives = 403/850 (47%), Gaps = 59/850 (6%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSALEFSQKAC 63
           ++  L V ++++ L GA     ++ + A     AIAITD N+L      +SAL+  ++  
Sbjct: 25  AYAELCVTTNFTFLTGASHPEELVMRAAELGLSAIAITDQNSLAGVVRAWSALKKLKQES 84

Query: 64  AAGIQPIIGCQLDID-MQDNLKMTNQGKTPFPTVPSIVL---------------LVSTAE 107
              +Q     Q+D    QD+ +     + P  ++P +++               L     
Sbjct: 85  QEALQIRSHQQVDPSSRQDSSQGRPLTRPPVLSLPKLIVGCRLVLQDSNLHWIALPQDKA 144

Query: 108 GYQRLIELVSRMYLLDQGKQSVRICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQ 165
            Y+RL    +R+  L + + +   C  + +++    +G+I++         R+    S  
Sbjct: 145 AYKRL----TRLLTLGKRRTTKGGCDLYTKDLIAACKGMILIALPQRNWSQRSL---SQS 197

Query: 166 VAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
           + E  +    +   +++++    H  G D+   +   Q A     P+VA  + L      
Sbjct: 198 IPE--IQAMGRHHPNQVFLGAAPHYDGSDQAYLASCAQAAQRASAPMVAVGDVLMHRAGR 255

Query: 225 YEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
            +  DVL  + H   + +   R     +  LK  S+M  +F   P AL  TVEIA +CSF
Sbjct: 256 RQLADVLTCMRHHITIDEIGTRALPNGERRLKAGSDMARVFRHYPAALRRTVEIAAKCSF 315

Query: 284 ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            L     +   +  +E +   +  ++ L   A  GL+ R  +G   +        Q ++ 
Sbjct: 316 DL---GQLSYEYPHEEME--AQTPQHRLEQLAKEGLKRRYPEGPPERAI------QLMEK 364

Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
           EL V+ ++ F  YFL V D +Q+AK   I +  GRGS A S+  Y L ITD+ P   +++
Sbjct: 365 ELAVVRQLNFPAYFLTVHDIVQFAKSQGI-LCQGRGSAANSILCYLLGITDVSPDMIAMV 423

Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           FERF++  R   PD D+DF  +RR+EVI+++  KYG ER     T    + +AA+R+VG+
Sbjct: 424 FERFVSKHRGEPPDIDVDFEHERREEVIQWIYQKYGRERAGLCATVIHFRTRAAIREVGK 483

Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE--ARLADPSVDRLLEISQKLEGL 521
            + +       L   I       +S   + D +R RE    L D  + + L +  +  G 
Sbjct: 484 VMGLSQDVTAGLSGQIWG-----MSTGGL-DFTRIRELGLDLKDRRLMQTLHLIGEFIGF 537

Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
            RH S H  G VI    L +L P+      D  V  ++   I+  G++K D LGL  L+ 
Sbjct: 538 PRHLSQHVGGFVITRGRLDELAPIENAAMEDRTVICWDKDDIDALGILKVDILGLGMLSC 597

Query: 582 LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           ++KS   L Q   +   ++ IP  D  TY +L     +G+FQ+ES      L  M+P   
Sbjct: 598 IRKSFALLQQHETLSHSIASIPQGDVATYDMLCRADAVGVFQVESRAQMNFLPRMRPREF 657

Query: 641 EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            D++  V++ RPGPI  D +  Y  R+NG EK     P ++ + + T GV ++QEQ MQI
Sbjct: 658 YDLVIQVAIVRPGPIQGDMVQPYVRRRNGLEKAEPFGPALEEVTRRTLGVPLFQEQAMQI 717

Query: 699 AQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
           A + +G+S  EAD LRR++   +    +   +++FI+G   NG    +A   F  +  FA
Sbjct: 718 AVVGAGFSPEEADHLRRSLASFRRMGTIATYRDKFITGMLNNGYDPDMAERCFGQIEGFA 777

Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
           DYGF +SHAAA+A++ Y +AW+K H+P  F  A +  +        +  +D R+ +++  
Sbjct: 778 DYGFPESHAAAFAMLVYVSAWLKCHHPAIFSCALLNSQPMGFYAPAQIVRDTREHDVETR 837

Query: 818 PPSVNTPCVD 827
           P  VN    D
Sbjct: 838 PICVNRSAWD 847


>gi|256368535|ref|YP_003106041.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915]
 gi|255998693|gb|ACU47092.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915]
          Length = 1077

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 245/861 (28%), Positives = 403/861 (46%), Gaps = 79/861 (9%)

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
            H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R   
Sbjct: 162  HQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLE 221

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILP-RFIEKEC 300
               + +LK   EMV +F D PEA+  T +     +F L          PI P +  ++  
Sbjct: 222  KNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPGKTAQQHL 281

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D+  E     R+     +  ++ QG I K             EL +IAR+++  YFL V
Sbjct: 282  YDLVWE--GAARHYGADMIPPKV-QGLINK-------------ELALIARLEYEPYFLTV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +  A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+
Sbjct: 326  YDIVTHAREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDV 384

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   + 
Sbjct: 385  DFEHERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVW 444

Query: 481  NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                  +  Q I      R+A L   +P + R +E++  L G  RH S H  G V+    
Sbjct: 445  GLSGGGIDRQHI------RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDR 498

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------ 592
            L + VP+           +++   I++ GL+K D L L  LT ++K+ D + Q       
Sbjct: 499  LDETVPIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYG 558

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G K+ L+ +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 559  GEKLTLASLPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRP 618

Query: 653  GPI--DNIVVYNNRKNGKE--KIVSIHPLIDP------MLKETQGVIIYQEQVMQIAQLL 702
            GPI  D +  Y  R++G+E   + S  P   P      +L +T+GV ++QEQ M+IA   
Sbjct: 619  GPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEA 678

Query: 703  SGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            + ++  EA+ LRRAM    K   +   +++ I G    G  +T A N F  +  F +YGF
Sbjct: 679  AKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQINGFGEYGF 738

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  V
Sbjct: 739  PESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDV 798

Query: 822  NTPCVDFKVGDN------RIYYSLA-AIKGVGTTTAR--HIMEASADKPFDSLEDFCSRV 872
            N     F   DN       ++ +L    + +   + R   ++ A   +P+ ++ED   R+
Sbjct: 799  N-----FSQWDNILEETPDVHLALRLGFRQIDGFSKRDTELLIADRQEPYRTIEDMHRRL 853

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEK 931
               +L+RR    L  A   D FG        SLD  ++ A W  +   N     +F    
Sbjct: 854  ---RLDRRAFTLLADA---DAFG--------SLDIDRRAALWAVRRLPNDETLPLFRAAA 899

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
             +   +    K     +S     +         GHPL   +  L   G+           
Sbjct: 900  ASELAQEPRTKLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGAD 959

Query: 992  GNNIRLAAMVVSKQQKKTRKG 1012
            G  +++A +V  +Q+  + KG
Sbjct: 960  GRRMKVAGVVTVRQRPGSAKG 980


>gi|91788255|ref|YP_549207.1| DNA polymerase III subunit alpha [Polaromonas sp. JS666]
 gi|91697480|gb|ABE44309.1| DNA polymerase III, alpha subunit [Polaromonas sp. JS666]
          Length = 1068

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 273/1052 (25%), Positives = 469/1052 (44%), Gaps = 118/1052 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S   GA     + ++       A+AITD  ++   +   +     G+Q
Sbjct: 7    PDYAELHALSNFSFQRGASHAQELAERAFKLGYKALAITDECSVAGVVRAHEVTRELGLQ 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL----LDQ 124
             + G +  +   +  ++              V+L   A G+  L E ++        +D+
Sbjct: 67   LLPGAEFLVQAANAFRL--------------VVLPHNAAGWGNLCEFITEARRAGDEVDK 112

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G   V +  +    +    +++       P+  A     +  A     T   LFG   ++
Sbjct: 113  GSYRVVLGETDFSRLADCEILL------SPLPDAIH-TQALCAHAEWAT--GLFGPNAWL 163

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             ++  +G D   R  Q+ ++A    + LVA  N L         HDV+ A+     V + 
Sbjct: 164  AVELLQGLDDALRLQQLQEVAGHTGIRLVAAGNVLMHKRSRKPLHDVMTAIRLGRPVHEC 223

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                +   + +L+ R  +  I+      L  T+E+A RCSF L      L R+  ++   
Sbjct: 224  GFALQANAEAHLRPRMRLADIYP--AGLLRATLEVAARCSFNLD-EIRNLYRYPREDMVP 280

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +     LR     G   R  +G   K       R++L FEL +I  +++  +F+ V D
Sbjct: 281  PAETPARWLRRLTWQGAHTRYPRGIPRK------VRKQLGFELALIEELEYEMFFITVHD 334

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A +  I +  GRGS A S   Y L +T ++P    LLFERF++ +R   PD D+DF
Sbjct: 335  IVRFANEQKI-LCQGRGSAANSAVCYCLGVTAVNPAESKLLFERFISRERREPPDIDVDF 393

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+EVI+Y+  KYGH+R A   T    + ++A+RDVG+AL M    +++  K     
Sbjct: 394  EHERREEVIQYIYGKYGHDRAAIAATVIRYRPRSAIRDVGKALAMAPGLIEQFAK----- 448

Query: 483  PAHPVSLQAIADDSRFREARLAD--PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              H     +   + + R+A LA     V + L++S +L G  RH S H  G V+    L+
Sbjct: 449  -EHFWFDGSEVLEEKIRQAGLAGRVGPVLQWLDLSAQLIGFPRHLSQHVGGFVLTQGKLT 507

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
            +LVP+      D  + Q++   +E  GL+K D L L  L+ +++ L  + Q RG ++ + 
Sbjct: 508  RLVPVQPASMEDRRIIQWDKDDLEAMGLLKVDVLALGMLSAIRRCLAMVNQTRGSQLQMH 567

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I  D+  TY ++    T+G+FQ+ES      L  +QP    D++  V++ RPGPI   +
Sbjct: 568  QIAPDE-VTYDMICEADTVGVFQIESRAQMSMLPRLQPRSYYDLVVEVAIVRPGPIQGGM 626

Query: 660  VY---NNR---KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            V+    NR   +NG E I   +P ++P L+ T G+ I+QEQVMQIA + + ++  EAD L
Sbjct: 627  VHPYLKNREILRNGGE-IKPEYPALNPALERTLGIPIFQEQVMQIAMIAADFTPGEADDL 685

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RR+M   K K  +D+   R ++    NG S   +  IF  +  F DYGF +SHAA++A +
Sbjct: 686  RRSMAAWKRKGGVDRFHGRLVNAMVNNGYSAEFSERIFSQILGFGDYGFPESHAASFAKL 745

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI-------------MPP 819
             Y + W+K H P  FLAA +  +        +  QDA +  +++             + P
Sbjct: 746  VYVSCWLKCHEPACFLAAMVNSQPMGFYSPSQLVQDAVRHGVEVRAVDVMHSDWDCTLEP 805

Query: 820  SVNT-----PCVDFKVGDNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS-- 870
            + N      P +   + +N+  +   L  + G+    A  ++EA A   F S ED  S  
Sbjct: 806  AENKALPQHPGIYPGIKENQPAVRLGLRLVSGLREDAAIRLVEARAQAAFSSTEDLVSRA 865

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS---------LDNIQKYAQWVEKNRTN 921
            R+++ ++N       +   +    G+ R Q+  +         L ++  +   +E   T 
Sbjct: 866  RLNTLEINALAAADALLPLS----GHRRQQVWDASAIKPAPGLLKSVPTHETPLELPDTP 921

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            + ENI    + T                          G     HP+ + +  L + G+ 
Sbjct: 922  EGENILFDYQAT--------------------------GLTLRRHPVALLRERLARKGLL 955

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
               E  A   G  +    +V  +QQ +T  G+
Sbjct: 956  SASELNALPDGEEVAGCGIVTVRQQPQTANGT 987


>gi|256045858|ref|ZP_05448733.1| error-prone DNA polymerase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112572|ref|ZP_05453493.1| error-prone DNA polymerase [Brucella melitensis bv. 3 str. Ether]
 gi|260563148|ref|ZP_05833634.1| error-prone DNA polymerase [Brucella melitensis bv. 1 str. 16M]
 gi|265992274|ref|ZP_06104831.1| error-prone DNA polymerase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994014|ref|ZP_06106571.1| error-prone DNA polymerase [Brucella melitensis bv. 3 str. Ether]
 gi|71151818|sp|Q8YEK2|DNAE2_BRUME RecName: Full=Error-prone DNA polymerase
 gi|260153164|gb|EEW88256.1| error-prone DNA polymerase [Brucella melitensis bv. 1 str. 16M]
 gi|262764995|gb|EEZ10916.1| error-prone DNA polymerase [Brucella melitensis bv. 3 str. Ether]
 gi|263003340|gb|EEZ15633.1| error-prone DNA polymerase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 1077

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 246/865 (28%), Positives = 405/865 (46%), Gaps = 87/865 (10%)

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
            H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R   
Sbjct: 162  HQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLE 221

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILP-RFIEKEC 300
               + +LK   EMV +F D PEA+  T +     +F L          PI P +  ++  
Sbjct: 222  KNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPGKTAQQHL 281

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D+  E     R+     +  ++ QG I K             EL +IAR+++  YFL V
Sbjct: 282  YDLVWE--GAARHYGADMIPPKV-QGLINK-------------ELALIARLEYEPYFLTV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +  A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+
Sbjct: 326  YDIVTHAREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDV 384

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   + 
Sbjct: 385  DFEHERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVW 444

Query: 481  NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                  +  Q I      R+A L   +P + R +E++  L G  RH S H  G V+    
Sbjct: 445  GLSGGGIDRQHI------RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDR 498

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------ 592
            L + VP+           +++   I++ GL+K D L L  LT ++K+ D + Q       
Sbjct: 499  LDETVPIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYG 558

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G K+ L+ +P  D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 559  GEKLTLASLPRKDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRP 618

Query: 653  GPI--DNIVVYNNRKNGKE--KIVSIHPLIDP------MLKETQGVIIYQEQVMQIAQLL 702
            GPI  D +  Y  R++G+E   + S  P   P      +L +T+GV ++QEQ M+IA   
Sbjct: 619  GPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEA 678

Query: 703  SGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            + ++  EA+ LRRAM    K   +   +++ I G    G  +T A N F  +  F +YGF
Sbjct: 679  AKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGF 738

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  V
Sbjct: 739  PESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDV 798

Query: 822  NTPCVDFKVGDN------RIYYSLA-AIKGVGTTTAR--HIMEASADKPFDSLEDFCSRV 872
            N     F   DN       ++ +L    + +   + R   ++ A   +P+ ++ED   R+
Sbjct: 799  N-----FSQWDNILEETPDVHLALRLGFRQIDGFSKRDTELLIADRQEPYRTIEDMHRRL 853

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
               +L+RR    L  A   D FG        SLD  ++ A W  +   N  E +      
Sbjct: 854  ---RLDRRAFTLLADA---DAFG--------SLDIDRRAALWAVRRLPND-ETLLLFRAA 898

Query: 933  TFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              S+     +  L + +     +      R+      GHPL   +  L   G+       
Sbjct: 899  AASELAQEPRTKLPEMAASEHVIADYETTRL---SLKGHPLQYLREGLAAEGVSTCRAVQ 955

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKG 1012
                G  +++A +V  +Q+  + KG
Sbjct: 956  EGADGRRMKVAGVVTVRQRPGSAKG 980


>gi|17988159|ref|NP_540793.1| error-prone DNA polymerase [Brucella melitensis bv. 1 str. 16M]
 gi|17983918|gb|AAL53057.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str. 16M]
          Length = 1078

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 246/865 (28%), Positives = 405/865 (46%), Gaps = 87/865 (10%)

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
            H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R   
Sbjct: 163  HQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLE 222

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILP-RFIEKEC 300
               + +LK   EMV +F D PEA+  T +     +F L          PI P +  ++  
Sbjct: 223  KNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPGKTAQQHL 282

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D+  E     R+     +  ++ QG I K             EL +IAR+++  YFL V
Sbjct: 283  YDLVWE--GAARHYGADMIPPKV-QGLINK-------------ELALIARLEYEPYFLTV 326

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +  A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+
Sbjct: 327  YDIVTHAREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDV 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   + 
Sbjct: 386  DFEHERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVW 445

Query: 481  NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                  +  Q I      R+A L   +P + R +E++  L G  RH S H  G V+    
Sbjct: 446  GLSGGGIDRQHI------RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDR 499

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------ 592
            L + VP+           +++   I++ GL+K D L L  LT ++K+ D + Q       
Sbjct: 500  LDETVPIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYG 559

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G K+ L+ +P  D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 560  GEKLTLASLPRKDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRP 619

Query: 653  GPI--DNIVVYNNRKNGKE--KIVSIHPLIDP------MLKETQGVIIYQEQVMQIAQLL 702
            GPI  D +  Y  R++G+E   + S  P   P      +L +T+GV ++QEQ M+IA   
Sbjct: 620  GPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEA 679

Query: 703  SGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            + ++  EA+ LRRAM    K   +   +++ I G    G  +T A N F  +  F +YGF
Sbjct: 680  AKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGF 739

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  V
Sbjct: 740  PESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDV 799

Query: 822  NTPCVDFKVGDN------RIYYSLA-AIKGVGTTTAR--HIMEASADKPFDSLEDFCSRV 872
            N     F   DN       ++ +L    + +   + R   ++ A   +P+ ++ED   R+
Sbjct: 800  N-----FSQWDNILEETPDVHLALRLGFRQIDGFSKRDTELLIADRQEPYRTIEDMHRRL 854

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
               +L+RR    L  A   D FG        SLD  ++ A W  +   N  E +      
Sbjct: 855  ---RLDRRAFTLLADA---DAFG--------SLDIDRRAALWAVRRLPND-ETLLLFRAA 899

Query: 933  TFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              S+     +  L + +     +      R+      GHPL   +  L   G+       
Sbjct: 900  AASELAQEPRTKLPEMAASEHVIADYETTRL---SLKGHPLQYLREGLAAEGVSTCRAVQ 956

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKG 1012
                G  +++A +V  +Q+  + KG
Sbjct: 957  EGADGRRMKVAGVVTVRQRPGSAKG 981


>gi|294851474|ref|ZP_06792147.1| error-prone DNA polymerase [Brucella sp. NVSL 07-0026]
 gi|294820063|gb|EFG37062.1| error-prone DNA polymerase [Brucella sp. NVSL 07-0026]
          Length = 1085

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 245/861 (28%), Positives = 403/861 (46%), Gaps = 79/861 (9%)

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
            H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R   
Sbjct: 170  HQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLE 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILP-RFIEKEC 300
               + +LK   EMV +F D PEA+  T +     +F L          PI P +  ++  
Sbjct: 230  KNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPGKTAQQHL 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D+  E     R+     +  ++ QG I K             EL +IAR+++  YFL V
Sbjct: 290  YDLVWE--GAARHYGADMIPPKV-QGLINK-------------ELALIARLEYEPYFLTV 333

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +  A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+
Sbjct: 334  YDIVTHAREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDV 392

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   + 
Sbjct: 393  DFEHERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVW 452

Query: 481  NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                  +  Q I      R+A L   +P + R +E++  L G  RH S H  G V+    
Sbjct: 453  GLSGGGIDRQHI------RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDR 506

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------ 592
            L + VP+           +++   I++ GL+K D L L  LT ++K+ D + Q       
Sbjct: 507  LDETVPIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYG 566

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G K+ L+ +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 567  GEKLTLASLPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRP 626

Query: 653  GPI--DNIVVYNNRKNGKE--KIVSIHPLIDP------MLKETQGVIIYQEQVMQIAQLL 702
            GPI  D +  Y  R++G+E   + S  P   P      +L +T+GV ++QEQ M+IA   
Sbjct: 627  GPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEA 686

Query: 703  SGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            + ++  EA+ LRRAM    K   +   +++ I G    G  +T A N F  +  F +YGF
Sbjct: 687  AKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGF 746

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  V
Sbjct: 747  PESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDV 806

Query: 822  NTPCVDFKVGDN------RIYYSLA-AIKGVGTTTAR--HIMEASADKPFDSLEDFCSRV 872
            N     F   DN       ++ +L    + +   + R   ++ A   +P+ ++ED   R+
Sbjct: 807  N-----FSQWDNILEETPDVHLALRLGFRQIDGFSKRDTELLIADRQEPYRTIEDMHRRL 861

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEK 931
               +L+RR    L  A   D FG        SLD  ++ A W  +   N     +F    
Sbjct: 862  ---RLDRRAFTLLADA---DAFG--------SLDIDRRAALWAVRRLPNDETLPLFRAAA 907

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
             +   +    K     +S     +         GHPL   +  L   G+           
Sbjct: 908  ASELAQEPRTKLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGAD 967

Query: 992  GNNIRLAAMVVSKQQKKTRKG 1012
            G  +++A +V  +Q+  + KG
Sbjct: 968  GRRMKVAGVVTVRQRPGSAKG 988


>gi|23500984|ref|NP_697111.1| error-prone DNA polymerase [Brucella suis 1330]
 gi|71151819|sp|Q8G381|DNAE2_BRUSU RecName: Full=Error-prone DNA polymerase
 gi|23346843|gb|AAN29026.1| DNA polymerase III, alpha subunit [Brucella suis 1330]
          Length = 1077

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 245/861 (28%), Positives = 401/861 (46%), Gaps = 79/861 (9%)

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
            H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R   
Sbjct: 162  HQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLE 221

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILP-RFIEKEC 300
               + +LK   EMV +F D PEA+  T +     +F L          PI P +  ++  
Sbjct: 222  KNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPGKTAQQHL 281

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D+  E         +   +V   QG I K             EL +IAR+++  YFL V
Sbjct: 282  YDLVWEGAARHYGADIIPPKV---QGLINK-------------ELALIARLEYEPYFLTV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +  A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+
Sbjct: 326  YDIVTHAREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDV 384

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   + 
Sbjct: 385  DFEHERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVW 444

Query: 481  NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                  +  Q I      R+A L   +P + R +E++  L G  RH S H  G V+    
Sbjct: 445  GLSGGGIDRQHI------RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLARDR 498

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------ 592
            L + VP+           +++   I++ GL+K D L L  LT ++K+ D + Q       
Sbjct: 499  LDETVPIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYG 558

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G K+ L+ +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 559  GEKLTLASLPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRP 618

Query: 653  GPI--DNIVVYNNRKNGKE--KIVSIHPLIDP------MLKETQGVIIYQEQVMQIAQLL 702
            GPI  D +  Y  R++G+E   + S  P   P      +L +T+GV ++QEQ M+IA   
Sbjct: 619  GPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEA 678

Query: 703  SGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            + ++  EA+ LRRAM    K   +   +++ I G    G  +T A N F  +  F +YGF
Sbjct: 679  AKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGF 738

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  V
Sbjct: 739  PESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMVFYAPAQIVRDAREHGVTVLPVDV 798

Query: 822  NTPCVDFKVGDN------RIYYSLA-AIKGVGTTTAR--HIMEASADKPFDSLEDFCSRV 872
            N     F   DN       ++ +L    + +   + R   ++ A   +P+ ++ED   R+
Sbjct: 799  N-----FSQWDNILEETPDVHLALRLGFRQIDGFSKRDTELLIADRQEPYRTIEDMHRRL 853

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEK 931
               +L+RR    L  A   D FG        SLD  ++ A W  +   N     +F    
Sbjct: 854  ---RLDRRAFTLLADA---DAFG--------SLDIDRRAALWAVRRLPNDETLPLFRAAA 899

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
             +   +    K     +S     +         GHPL   +  L   G+           
Sbjct: 900  ASELAQEPRTKLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGAD 959

Query: 992  GNNIRLAAMVVSKQQKKTRKG 1012
            G  +++A +V  +Q+  + KG
Sbjct: 960  GRRMKVAGVVTVRQRPGSAKG 980


>gi|85373905|ref|YP_457967.1| DNA polymerase III alpha chain [Erythrobacter litoralis HTCC2594]
 gi|84786988|gb|ABC63170.1| DNA polymerase III alpha chain [Erythrobacter litoralis HTCC2594]
          Length = 1262

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 240/879 (27%), Positives = 404/879 (45%), Gaps = 105/879 (11%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV L + S +S L GA    +++    +    AI I D N++   +    +A    ++P+
Sbjct: 28  FVELGLVSCFSFLRGASDAVDLVLSARSAGYDAIGIADVNSMAGVVRIHTEAQTLKLRPV 87

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE--GYQRLIELVS--RMYLLD--- 123
           IG +++                  TV  +  L    +   Y R+  L+S  RM  L+   
Sbjct: 88  IGTRIE------------------TVEGLAFLAYPRDRAAYGRVCRLISAGRMATLEGEW 129

Query: 124 QGKQSVRICLSWLQEIGTE-GLIMLTG-------------------------GS------ 151
           Q K    I L+ L E   E  LI+L                           GS      
Sbjct: 130 QAKGECDISLAMLAEHSEEVQLILLPPDDLAQRFTIKIESNIIPFRHPGLDPGSRFSSRT 189

Query: 152 ----SGP----------IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE 197
               +GP          +  A F +      ++L T + L    LY      RG D  R 
Sbjct: 190 APEEAGPRLGDRGDEKVVIEAVFPDILPHLTRQLPTLRHLAASYLY------RGDDIARI 243

Query: 198 SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKN 256
            ++  LA  + L L+ATNN  + + E     DV+ A+ H T V++         + YLK 
Sbjct: 244 DRLDTLAKANNLTLLATNNVHYHAPERRPLQDVMTAIRHKTTVARAGHLLHGNAERYLKP 303

Query: 257 RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
              MV +F+  P A+    E+A  C+F L+      P+ I  +    Q+  E E      
Sbjct: 304 PETMVHLFARWPHAIAAAREVADACNFSLEELKYEYPQEIYPDGMTPQQFLEKE----TW 359

Query: 317 AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV-G 375
            G + R   G           R+ L  EL +IA++  + YFL + D + +A+  + P+  
Sbjct: 360 KGTQWRYPNGL------PDSVRETLQRELALIAKLDLARYFLTIKDIVDYARSVDPPILC 413

Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
            GRGS A S   + L IT +DP +  LLF+RF++ +R   PD D+DF  +RR+EVI+++ 
Sbjct: 414 QGRGSAANSAVCFVLGITSVDPAKHQLLFDRFISEERKEPPDIDVDFEHERREEVIQHIY 473

Query: 436 NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
            KYG  R     T    + + A+R+VG+A+ +       L + +       +    +A+ 
Sbjct: 474 RKYGRHRAGLTATVIHYRPRMAIREVGKAMGLSEDVTSALARTVWGGWGKEIGEGHVAET 533

Query: 496 SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
                  +ADP + R+L +++++ G+ RH S H  G ++ +  L++ VP+      D   
Sbjct: 534 G----MDVADPQLRRVLTLTRQMIGMPRHLSQHVGGFILTEGALTETVPIGNGAMPDRSF 589

Query: 556 TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTT 614
            +++   IE  G++K D L L  LT ++K LD L     + ++L+ +P +D ETY +L  
Sbjct: 590 IEWDKDDIEALGILKVDVLALGMLTCIKKCLDLLENHHERPLELATVPREDPETYAMLRK 649

Query: 615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIV 672
             +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  R+ G+EK+V
Sbjct: 650 GDSLGVFQVESRAQMNMLPRLRPREFYDLVIQVAIVRPGPIQGDMVHPYLKRRRGEEKVV 709

Query: 673 SIHPL--------IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKE 723
              P         +  +L+ T GV I+QEQ M+IA   + +S  EA+ LR+AM   + + 
Sbjct: 710 IPAPSPEHGAPDELSSILERTLGVPIFQEQAMKIALDAARFSSIEANRLRKAMATFRSRG 769

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +D+ ++  +      G  +  A   F  +  F +YGF +SHAA++A + Y ++W+K H+
Sbjct: 770 MVDELQDMMVERMVTRGYDREFAERCFNQIRGFGEYGFPESHAASFAHLVYVSSWLKCHF 829

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           P  F  A +  +        +  +DA +  ++++P  VN
Sbjct: 830 PAAFACALLNSQPMGFYAPAQIVRDAAEHGVEVLPADVN 868


>gi|254696496|ref|ZP_05158324.1| error-prone DNA polymerase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260760873|ref|ZP_05873216.1| error-prone DNA polymerase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260671305|gb|EEX58126.1| error-prone DNA polymerase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 1077

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 245/861 (28%), Positives = 402/861 (46%), Gaps = 79/861 (9%)

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
            H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R   
Sbjct: 162  HQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLE 221

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILP-RFIEKEC 300
               + +LK   EMV +F D PEA+  T +     +F L          PI P +  ++  
Sbjct: 222  KNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPGKTAQQHL 281

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D+  E     R+     +  ++ QG I K             EL +IAR+++  YFL V
Sbjct: 282  YDLVWE--GAARHYGADMIPPKV-QGLINK-------------ELALIARLEYEPYFLTV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +  A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+
Sbjct: 326  YDIVTHAREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDV 384

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   + 
Sbjct: 385  DFEHERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVW 444

Query: 481  NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                  +  Q I      R+A L   +P + R +E++  L G  RH S H  G V+    
Sbjct: 445  GLSGGGIDRQHI------RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDR 498

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------ 592
            L + VP+           +++   I++ GL+K D L L  LT ++K+ D + Q       
Sbjct: 499  LDETVPIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYG 558

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G K+ L+ +P  D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 559  GEKLTLASLPRKDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRP 618

Query: 653  GPI--DNIVVYNNRKNGKE--KIVSIHPLIDP------MLKETQGVIIYQEQVMQIAQLL 702
            GPI  D +  Y  R++G+E   + S  P   P      +L +T+GV ++QEQ M+IA   
Sbjct: 619  GPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEA 678

Query: 703  SGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            + ++  EA+ LRRAM    K   +   +++ I G    G  +T A N F  +  F +YGF
Sbjct: 679  AKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGF 738

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  V
Sbjct: 739  PESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDV 798

Query: 822  NTPCVDFKVGDN------RIYYSLA-AIKGVGTTTAR--HIMEASADKPFDSLEDFCSRV 872
            N     F   DN       ++ +L    + +   + R   ++ A   +P+ ++ED   R+
Sbjct: 799  N-----FSQWDNILEETPDVHLALRLGFRQIDGFSKRDTELLIADRQEPYRTIEDMHRRL 853

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEK 931
               +L+RR    L  A   D FG        SLD  ++ A W  +   N     +F    
Sbjct: 854  ---RLDRRAFTLLADA---DAFG--------SLDIDRRAALWAVRRLPNDETLPLFRAAA 899

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
             +   +    K     +S     +         GHPL   +  L   G+           
Sbjct: 900  ASELAQEPRTKLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGAD 959

Query: 992  GNNIRLAAMVVSKQQKKTRKG 1012
            G  +++A +V  +Q+  + KG
Sbjct: 960  GRRMKVAGVVTVRQRPGSAKG 980


>gi|237814543|ref|ZP_04593541.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A]
 gi|237789380|gb|EEP63590.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A]
          Length = 1078

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 245/861 (28%), Positives = 402/861 (46%), Gaps = 79/861 (9%)

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
            H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R   
Sbjct: 163  HQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLE 222

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILP-RFIEKEC 300
               + +LK   EMV +F D PEA+  T +     +F L          PI P +  ++  
Sbjct: 223  KNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPGKTAQQHL 282

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D+  E     R+     +  ++ QG I K             EL +IAR+++  YFL V
Sbjct: 283  YDLVWE--GAARHYGADMIPPKV-QGLINK-------------ELALIARLEYEPYFLTV 326

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +  A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+
Sbjct: 327  YDIVTHAREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDV 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   + 
Sbjct: 386  DFEHERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVW 445

Query: 481  NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                  +  Q I      R+A L   +P + R +E++  L G  RH S H  G V+    
Sbjct: 446  GLSGGGIDRQHI------RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDR 499

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------ 592
            L + VP+           +++   I++ GL+K D L L  LT ++K+ D + Q       
Sbjct: 500  LDETVPIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYG 559

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G K+ L+ +P  D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 560  GEKLTLASLPRKDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRP 619

Query: 653  GPI--DNIVVYNNRKNGKE--KIVSIHPLIDP------MLKETQGVIIYQEQVMQIAQLL 702
            GPI  D +  Y  R++G+E   + S  P   P      +L +T+GV ++QEQ M+IA   
Sbjct: 620  GPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEA 679

Query: 703  SGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            + ++  EA+ LRRAM    K   +   +++ I G    G  +T A N F  +  F +YGF
Sbjct: 680  AKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGF 739

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  V
Sbjct: 740  PESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDV 799

Query: 822  NTPCVDFKVGDN------RIYYSLA-AIKGVGTTTAR--HIMEASADKPFDSLEDFCSRV 872
            N     F   DN       ++ +L    + +   + R   ++ A   +P+ ++ED   R+
Sbjct: 800  N-----FSQWDNILEETPDVHLALRLGFRQIDGFSKRDTELLIADRQEPYRTIEDMHRRL 854

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEK 931
               +L+RR    L  A   D FG        SLD  ++ A W  +   N     +F    
Sbjct: 855  ---RLDRRAFTLLADA---DAFG--------SLDIDRRAALWAVRRLPNDETLPLFRAAA 900

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
             +   +    K     +S     +         GHPL   +  L   G+           
Sbjct: 901  ASELAQEPRTKLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGAD 960

Query: 992  GNNIRLAAMVVSKQQKKTRKG 1012
            G  +++A +V  +Q+  + KG
Sbjct: 961  GRRMKVAGVVTVRQRPGSAKG 981


>gi|150398216|ref|YP_001328683.1| DNA polymerase III subunit alpha [Sinorhizobium medicae WSM419]
 gi|167016912|sp|A6UDW8|DNAE2_SINMW RecName: Full=Error-prone DNA polymerase
 gi|150029731|gb|ABR61848.1| DNA polymerase III, alpha subunit [Sinorhizobium medicae WSM419]
          Length = 1116

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 247/878 (28%), Positives = 405/878 (46%), Gaps = 82/878 (9%)

Query: 179  GDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AH 236
            G+RLY+ L  R+ G+DR+  + +  +A    + L+ATN++L+   +     DV+ A+  H
Sbjct: 151  GNRLYLGLAPRYDGFDRHDFAVLATVARKAGIGLLATNDALYHDPDYRPLADVVTAIREH 210

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V       +   + +LK+  EM  +FSD PEA+ NT +  R  +F L           
Sbjct: 211  VPVAGAGFLLQKNAERHLKSPREMARLFSDYPEAIANTQKFFRHLAFSL----------- 259

Query: 297  EKECDDI--QKEEENELRNKAVAGLEVRLAQGAIAK---GYHAQDYRQRLDFELNVIARM 351
                D++  Q  +EN         L   +++GA  +   G   +  RQ +++EL +I   
Sbjct: 260  ----DELRHQYPDENAGGETPAESLRRLVSEGAAERYPEGVPEKVQRQ-IEYELELINDK 314

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            K+  YFL V   +++A+   I +  GRGS A S   + L ITD+DP +F+LLF+RFL+ D
Sbjct: 315  KYEPYFLTVHKLVKFARSEKI-LCQGRGSAANSSVCFCLGITDVDPQKFTLLFDRFLSKD 373

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+DF  +RR+EVI+Y+   YG E         S ++++A R+V +A       
Sbjct: 374  RDEPPDIDVDFEHERREEVIQYIYRTYGKEHAGLAAAVISYRSRSAGREVAKAFGFSEDV 433

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
               L   I      P +     + +R      ADPS  R+L  +  L    RH S H  G
Sbjct: 434  QSALVSSIWGWGNSPFT----EEQARGAGLDAADPSTRRVLAYASLLMNYPRHLSQHVGG 489

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-A 590
             VI    L ++VP+      D  + +++   +++  ++K D L L  LT L K    L A
Sbjct: 490  FVITRDRLDEVVPIMNTAMPDRYMIEWDKDDLDELKILKVDVLALGMLTCLAKGFKLLEA 549

Query: 591  QRGVKVDLSLIPFDDHE--TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
              G  + L+ I + DH+   Y ++    T+G+FQ+ES      L  +QP  + D++  V+
Sbjct: 550  HYGEPITLAEI-YQDHQPAVYDMICRADTVGVFQIESRAQMSMLPRLQPREMYDLVIEVA 608

Query: 649  LYRPGPIDNIVV--YNNRKNGK---EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            + RPGPI   +V  Y  R+ G+   EK+    P +  +L+ T GV ++QEQ MQIA   +
Sbjct: 609  IVRPGPIQGNMVHPYLKRREGQRKGEKVKYPSPELKAVLERTLGVPLFQEQAMQIAITAA 668

Query: 704  GYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            G+S SEAD LRRAM   K    +   + + + G   NG  +  A   F  +  F +YGF 
Sbjct: 669  GFSPSEADRLRRAMATFKRTGTIHTFERKMVEGMVANGYEREFAERCFNQIKGFGEYGFP 728

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            +SHAA++A + Y +AW+KT+YP  F AA +  +        +  +DAR+  ++++P  +N
Sbjct: 729  ESHAASFASLVYASAWLKTYYPDIFCAALLNAQPMGFYAPAQLVRDAREHGVKVLPVDIN 788

Query: 823  ---------------TPCVDFKVGDNR--------IYYSLAAIKGVGTTTARHIMEASAD 859
                              VD +  D R        +      +KG+       ++ A   
Sbjct: 789  HSDWDALLEGEGQFRKESVDPRHADMREVIKTRKAVRLGFRLVKGLKQADMGALV-ACRG 847

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
            + + S+ D   R     L+R VLE L  A A    G  R   L ++  +         + 
Sbjct: 848  EGYRSVHDLWFR---SGLSRSVLERLADADAFRSLGLDRRAALWAVKAL---------DE 895

Query: 920  TNKHENIFAHEKGTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
             +  E +   E     D     K+ L +       +   ++ R L      HP+   +  
Sbjct: 896  QSAVERLPLFEGAGSLDLRAEPKVALPEMPAGEQVI---HDYRTLTLSLKAHPVSFMRED 952

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              + GI    +  AT  G  + +A +V+ +Q+  +  G
Sbjct: 953  FSRTGILRSRDLAATATGKWVTVAGLVLVRQRPGSANG 990


>gi|190893936|ref|YP_001980478.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
 gi|190699215|gb|ACE93300.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
          Length = 1152

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 277/1062 (26%), Positives = 476/1062 (44%), Gaps = 101/1062 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------ 63
            +F  +   +++S LEGA S   ++ + A  +   + I D N++   +    +A       
Sbjct: 6    AFFEIGARTNFSFLEGASSPEEMVLQAAYLRLGGLGIADRNSVAGVVRAHAQAEQIEERY 65

Query: 64   ---------AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
                     A       G    I +Q   ++     TP      I+       G+  L  
Sbjct: 66   KNRDAILAEAEKTGKKEGIFHPIRIQPGARLVFSDDTP-----DILAYPCNRRGWANLCR 120

Query: 115  LVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVA-EKRL 171
            L+S   L ++  K S  +  + L E G E ++ L        DR    + + Q A E  L
Sbjct: 121  LLSAGNLKEEAVKGSCILTEAELMEWGDEMMLALVA------DRTLVESQAGQTALEDYL 174

Query: 172  LTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              F++ F   L++ L   + G DR   + +  LA  + +PL+ATN  L+   E     DV
Sbjct: 175  ERFRRRFRKALFMVLAPAYDGRDRQVFAVLAMLAARNRVPLIATNQPLYHHPERRPLSDV 234

Query: 231  LMAVAHSTVVSQKD---RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            ++A+     +SQ      P    + YLK+  EMV IF D P+A+ENT     + SF L+ 
Sbjct: 235  VIAIREHVQISQAGFLLAP--NAERYLKDSREMVRIFGDYPDAVENTQVFFGKLSFSLKE 292

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                 P     E D  +  +E  L     AG   R  QG  +K        +++D+EL +
Sbjct: 293  LQHNYP----SENDPGETPQET-LERLTRAGAAKRYPQGVPSK------VAKQIDYELKL 341

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            +    ++ YFL V   IQ A+ +   +  GRGS A SV  Y L IT++DP + +LLF+RF
Sbjct: 342  VGDKNYASYFLTVHRIIQHARYDLKVLCQGRGSAANSVICYCLEITEVDPQKSTLLFDRF 401

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            ++ DR   PD D+DF  DRR+EVI+++  +YG +         + + ++A R+V +A  +
Sbjct: 402  ISMDRDEPPDIDVDFEHDRREEVIQFIYRRYGIDHAGLTAGVTTYRTRSAGREVAKAFGL 461

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                   +  L+       +S +    D++     + DP    +L+ + +L G  RH + 
Sbjct: 462  SEDVQSAISSLVWGWSEDNLSER----DAKAAGLDVKDPVTQNVLQYASELLGFPRHLTQ 517

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            H  G VI    L ++VP+ +    D  + +++   ++   ++K D L L  LT L+K+  
Sbjct: 518  HVGGFVITRDRLDEVVPIMKTAMPDRYMIEWDKDDLDNVKILKVDVLALGMLTCLRKAFS 577

Query: 588  FLA-QRGVKVDLSLIPFDDH-----ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
             L     VK  L+ +   +H       Y ++    TLG+FQ+ES      L  ++P    
Sbjct: 578  LLELHYDVKKTLADLGNREHGDEGKPVYEMMGRADTLGVFQIESRAQMSMLPRLKPKIFY 637

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSI-HPL--IDPMLKETQGVIIYQEQVM 696
            D++  V++ RPGPI  D +  Y  R+  + + + I +P   ++ +L+ T GV ++QEQ M
Sbjct: 638  DLVIEVAIVRPGPIQGDMVHPYLKRREQRARNIPIEYPSKELEAVLERTLGVPLFQEQAM 697

Query: 697  QIAQLLSGYSLSEADVLRRAMG--KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            QIA   +G+  +EAD LRRAM   K+     D +K RFI G          A   F  + 
Sbjct: 698  QIAITAAGFRPAEADKLRRAMATFKRTGTIGDFEK-RFIEGMVSKDYEPEFAKQCFNQIK 756

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F +YGF +SHAA++A++ Y ++W+K +YP  F AA +  +        +  +DAR+  +
Sbjct: 757  GFGEYGFPESHAASFALLVYASSWLKAYYPDVFCAAMLNSQPMGFYAPAQLVRDAREHGV 816

Query: 815  QIMPPSVNTP--------------CVDFKVGDNR--------IYYSLAAIKGVGTTTARH 852
            +I+   +N                 VDF+ G  R        +      IKG+ +   + 
Sbjct: 817  RILAVDINESEWDCTLEEAVFDRKTVDFRHGQMREIIKTRHAVRLGFRQIKGLSSDDMKR 876

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD--NIQK 910
            ++  +  + + S+ D   R     L + V+E L  A A      SR + L ++   +++ 
Sbjct: 877  LV-GNRGQGYGSVRDLWLR---SGLPKSVIERLADADAFRSIHLSRREALWAVRALDVKS 932

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
             A+ +      +H ++         D +  E+            + R L      HP+  
Sbjct: 933  AAEELPLFEQVRHIDLQPEPAAKLPDMLPGEQVI---------EDYRYLSLSLKAHPVSF 983

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             +  LRK GI    + ++   G  + +A +V+ +Q+  + KG
Sbjct: 984  LREELRKAGITRNVDLLSVPNGKRVTIAGLVLVRQRPGSAKG 1025


>gi|62289055|ref|YP_220848.1| error-prone DNA polymerase [Brucella abortus bv. 1 str. 9-941]
 gi|82698992|ref|YP_413566.1| error-prone DNA polymerase [Brucella melitensis biovar Abortus 2308]
 gi|254694867|ref|ZP_05156695.1| error-prone DNA polymerase [Brucella abortus bv. 3 str. Tulya]
 gi|254731409|ref|ZP_05189987.1| error-prone DNA polymerase [Brucella abortus bv. 4 str. 292]
 gi|260546348|ref|ZP_05822088.1| error-prone DNA polymerase [Brucella abortus NCTC 8038]
 gi|260759149|ref|ZP_05871497.1| error-prone DNA polymerase [Brucella abortus bv. 4 str. 292]
 gi|261215200|ref|ZP_05929481.1| error-prone DNA polymerase [Brucella abortus bv. 3 str. Tulya]
 gi|71151817|sp|Q57FU7|DNAE2_BRUAB RecName: Full=Error-prone DNA polymerase
 gi|62195187|gb|AAX73487.1| DnaE-1, DNA polymerase III, alpha subunit [Brucella abortus bv. 1
            str. 9-941]
 gi|82615093|emb|CAJ10022.1| Immunoglobulin/major histocompatibility complex:Phosphoesterase PHP,
            N-terminal:DNA polymerase III alpha subunit [Brucella
            melitensis biovar Abortus 2308]
 gi|260096455|gb|EEW80331.1| error-prone DNA polymerase [Brucella abortus NCTC 8038]
 gi|260669467|gb|EEX56407.1| error-prone DNA polymerase [Brucella abortus bv. 4 str. 292]
 gi|260916807|gb|EEX83668.1| error-prone DNA polymerase [Brucella abortus bv. 3 str. Tulya]
          Length = 1077

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 245/861 (28%), Positives = 402/861 (46%), Gaps = 79/861 (9%)

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
            H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R   
Sbjct: 162  HQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLE 221

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILP-RFIEKEC 300
               + +LK   EMV +F D PEA+  T +     +F L          PI P +  ++  
Sbjct: 222  KNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPGKTAQQHL 281

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D+  E     R+     +  ++ QG I K             EL +IAR+++  YFL V
Sbjct: 282  YDLVWE--GAARHYGADMIPPKV-QGLINK-------------ELALIARLEYEPYFLTV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +  A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+
Sbjct: 326  YDIVTHAREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDV 384

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   + 
Sbjct: 385  DFEHERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVW 444

Query: 481  NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                  +  Q I      R+A L   +P + R +E++  L G  RH S H  G V+    
Sbjct: 445  GLSGGGIDRQHI------RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDR 498

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------ 592
            L + VP+           +++   I++ GL+K D L L  LT ++K+ D + Q       
Sbjct: 499  LDETVPIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYG 558

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G K+ L+ +P  D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 559  GEKLTLASLPRKDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRP 618

Query: 653  GPI--DNIVVYNNRKNGKE--KIVSIHPLIDP------MLKETQGVIIYQEQVMQIAQLL 702
            GPI  D +  Y  R++G+E   + S  P   P      +L +T+GV ++QEQ M+IA   
Sbjct: 619  GPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEA 678

Query: 703  SGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            + ++  EA+ LRRAM    K   +   +++ I G    G  +T A N F  +  F +YGF
Sbjct: 679  AKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGF 738

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  V
Sbjct: 739  PESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDV 798

Query: 822  NTPCVDFKVGDN------RIYYSLA-AIKGVGTTTAR--HIMEASADKPFDSLEDFCSRV 872
            N     F   DN       ++ +L    + +   + R   ++ A   +P+ ++ED   R+
Sbjct: 799  N-----FSQWDNILEETPDVHLALRLGFRQIDGFSKRDTELLIADRQEPYRTIEDMHRRL 853

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEK 931
               +L+RR    L  A   D FG        SLD  ++ A W  +   N     +F    
Sbjct: 854  ---RLDRRAFTLLADA---DAFG--------SLDIDRRAALWAVRRLPNDETLPLFRAAA 899

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
             +   +    K     +S     +         GHPL   +  L   G+           
Sbjct: 900  ASELAQEPRTKLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGAD 959

Query: 992  GNNIRLAAMVVSKQQKKTRKG 1012
            G  +++A +V  +Q+  + KG
Sbjct: 960  GRRMKVAGVVTVRQRPGSAKG 980


>gi|300778347|ref|ZP_07088205.1| DNA-directed DNA polymerase III alpha subunit [Chryseobacterium
           gleum ATCC 35910]
 gi|300503857|gb|EFK34997.1| DNA-directed DNA polymerase III alpha subunit [Chryseobacterium
           gleum ATCC 35910]
          Length = 1016

 Score =  305 bits (780), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 211/696 (30%), Positives = 355/696 (51%), Gaps = 52/696 (7%)

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F ++++Y  H +L A+ ++T++S      +     Y K+   ++  F   P+ +ENT  +
Sbjct: 157 FGTKKEYNLHRILRAIDNNTLLSLLPENEICHKSEYFKSPQSLLDEFKYYPQIIENTKRL 216

Query: 278 ARRCSFILQVHAPILPR-FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
             +CSF      P   + +   + DD++      L   A AGLE R        G   + 
Sbjct: 217 LSQCSFDFAFSTPRNKKHYTGTKADDLKL-----LTRLAYAGLEKRY-------GRKNEQ 264

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
            + R++ EL VI  + FSGYFLI  D IQ++      +  GRGSGA S+ AY + ITDI 
Sbjct: 265 AKLRVEKELKVIDELDFSGYFLITWDIIQYSNSMGF-MHVGRGSGANSIVAYCIGITDIC 323

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL   L FERFLN +R S PDFDID+   +RD ++ Y+ N+YG + VA   T    + ++
Sbjct: 324 PLELDLYFERFLNLNRKSPPDFDIDWSWQKRDIILDYIFNRYGKDYVAFCGTNVEFKYRS 383

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +R+VG+A  +P  ++D L K    +P           +S FR     D  V ++ +  +
Sbjct: 384 IIREVGKAFGLPKEELDELSK----NP-----------ESVFR-----DEIVQKVQKYGK 423

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            LE      S HA GI+I + PL+    +    +   P+ Q++M   E+ G  K D L  
Sbjct: 424 LLEKFPNQRSMHACGILISEEPLTNFTALEMPPKG-FPIVQWDMYMAEELGFEKLDILSQ 482

Query: 577 KTLTLLQKSLDFLAQ-RGVKVDL--SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
           + L  ++ ++  + + RG+KVD+  + +  D+      L+   T+G F +ES  MR  L 
Sbjct: 483 RGLGTIKDTVRLIEEKRGIKVDIKDTALSKDEKICNEFLSQGRTIGCFYIESPAMRGLLR 542

Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            ++ D  + ++A  S+ RPG   + ++  Y  R N   +    H + +  L ET G+++Y
Sbjct: 543 RLKCDNYKVLVAASSIIRPGVAQSGMMREYIFRHNNPNQFEYFHKVFEEELGETYGIMVY 602

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIK--EEMDKQKERFISGASKNGISKTIAVNI 749
           QE V++IA    G S ++ D+LRRAM  K +  E++ K K  F     + G S+ ++  +
Sbjct: 603 QEDVIKIALHFGGLSAADGDILRRAMSGKYRSLEDLQKVKNHFFESCRELGHSEELSREV 662

Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
           +  +  FA Y F K+H+A+YAV SYQ+ ++K +YP+EF+ +++   M    + + +  +A
Sbjct: 663 YRQIESFAGYSFCKAHSASYAVESYQSLYLKVYYPLEFMVSAIN-NMGGFYRTEVYVHEA 721

Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME---ASADKPFDSLE 866
           +    +I+ P VN    +  +  + IY  L  ++ V +  A+ I E    S D  + S+E
Sbjct: 722 KMSGGKILNPCVNKSEYETTIYGDNIYLGLMLLEKVESKIAQLIPEERRKSGD--YLSME 779

Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
           DF  R+    +    L+ L+F GA    G  + +LL
Sbjct: 780 DFIKRI---PVGIETLQILIFIGAFRFTGIPKNELL 812



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 38/64 (59%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          ++L  HS +SL  G LS+++++ + +A     + +TD N +    EF +K  + GI+P+ 
Sbjct: 1  MYLNCHSYHSLRYGTLSIDDLVSQASALGINELVLTDINTITGVYEFKKKCESQGIKPVA 60

Query: 72 GCQL 75
          G ++
Sbjct: 61 GIEV 64


>gi|189023329|ref|YP_001934097.1| DNA polymerase III subunit alpha [Brucella abortus S19]
 gi|189018901|gb|ACD71623.1| DNA polymerase III subunit alpha [Brucella abortus S19]
          Length = 1071

 Score =  304 bits (779), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 245/861 (28%), Positives = 402/861 (46%), Gaps = 79/861 (9%)

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
            H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R   
Sbjct: 156  HQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLE 215

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILP-RFIEKEC 300
               + +LK   EMV +F D PEA+  T +     +F L          PI P +  ++  
Sbjct: 216  KNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPGKTAQQHL 275

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D+  E     R+     +  ++ QG I K             EL +IAR+++  YFL V
Sbjct: 276  YDLVWE--GAARHYGADMIPPKV-QGLINK-------------ELALIARLEYEPYFLTV 319

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +  A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+
Sbjct: 320  YDIVTHAREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDV 378

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   + 
Sbjct: 379  DFEHERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVW 438

Query: 481  NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                  +  Q I      R+A L   +P + R +E++  L G  RH S H  G V+    
Sbjct: 439  GLSGGGIDRQHI------RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDR 492

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------ 592
            L + VP+           +++   I++ GL+K D L L  LT ++K+ D + Q       
Sbjct: 493  LDETVPIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYG 552

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G K+ L+ +P  D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 553  GEKLTLASLPRKDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRP 612

Query: 653  GPI--DNIVVYNNRKNGKE--KIVSIHPLIDP------MLKETQGVIIYQEQVMQIAQLL 702
            GPI  D +  Y  R++G+E   + S  P   P      +L +T+GV ++QEQ M+IA   
Sbjct: 613  GPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEA 672

Query: 703  SGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            + ++  EA+ LRRAM    K   +   +++ I G    G  +T A N F  +  F +YGF
Sbjct: 673  AKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGF 732

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  V
Sbjct: 733  PESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDV 792

Query: 822  NTPCVDFKVGDN------RIYYSLA-AIKGVGTTTAR--HIMEASADKPFDSLEDFCSRV 872
            N     F   DN       ++ +L    + +   + R   ++ A   +P+ ++ED   R+
Sbjct: 793  N-----FSQWDNILEETPDVHLALRLGFRQIDGFSKRDTELLIADRQEPYRTIEDMHRRL 847

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEK 931
               +L+RR    L  A   D FG        SLD  ++ A W  +   N     +F    
Sbjct: 848  ---RLDRRAFTLLADA---DAFG--------SLDIDRRAALWAVRRLPNDETLPLFRAAA 893

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
             +   +    K     +S     +         GHPL   +  L   G+           
Sbjct: 894  ASELAQEPRTKLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGAD 953

Query: 992  GNNIRLAAMVVSKQQKKTRKG 1012
            G  +++A +V  +Q+  + KG
Sbjct: 954  GRRMKVAGVVTVRQRPGSAKG 974


>gi|148980529|ref|ZP_01816102.1| putative DNA polymerase III alpha chain [Vibrionales bacterium
           SWAT-3]
 gi|145961182|gb|EDK26497.1| putative DNA polymerase III alpha chain [Vibrionales bacterium
           SWAT-3]
          Length = 1030

 Score =  304 bits (779), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 222/737 (30%), Positives = 364/737 (49%), Gaps = 43/737 (5%)

Query: 181 RLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           RL++ LQRH +  D+      V+L++ H LP+ A    L  +         L A+ +   
Sbjct: 147 RLWIGLQRHLKQTDQQYIDYCVELSHHHHLPMTACGGVLMHNANRLPLQHSLTAIKYQKP 206

Query: 240 VSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-----QVHAPILP 293
           +++         +  L++ +++  IF    E LE +  IA  C F L     +  + ++P
Sbjct: 207 ITEVGTHLLANAERCLRSINKLSHIFKT--EWLEESNRIAELCDFDLDSLRYEYPSELIP 264

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
           +          +   + LR     G + R  QG         D +Q +D EL +I  + +
Sbjct: 265 Q---------GETPMSYLRMLVEKGKQARFPQGV------PSDIQQIIDKELGLIDELDY 309

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             +FL + D + +AK   I +  GRGS A SV  Y L IT +DP + S+LFERF++ +R 
Sbjct: 310 PFFFLTILDIVMFAKSQGI-LYQGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERD 368

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
             PD D+DF  +RR+E+I+Y+  KYG ER A   T  S + K+A+RDVG+AL +  +Q+D
Sbjct: 369 EPPDIDVDFEHERREEIIQYIYQKYGRERAALAATVISYRFKSAVRDVGKALGLQETQLD 428

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
              K   N     +  QA       +   L      + + +  ++ G  RH S H  G V
Sbjct: 429 YFIKNT-NRRDKSLGWQAQLTLLGIQPDSLKG---QQFIHLVNEIIGFPRHLSQHVGGFV 484

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
           I   PL +LVP+      D  + Q++   +E  GL+K D L L  L+ ++K  D + +  
Sbjct: 485 ISSGPLYELVPVENAAMHDRTIIQWDKDDLETLGLLKVDVLALGMLSAIRKCFDLIKRIH 544

Query: 593 GVKVDLSLIPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
           G  + ++ I    DD + Y ++    T+GIFQ+ES      L  ++P    D++  +++ 
Sbjct: 545 GRSLTIAEITRLKDDPQVYGMIQRADTVGIFQIESRAQMSMLPRLKPRTYYDLVIQIAIV 604

Query: 651 RPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
           RPGPI  D +  Y  R++G E I      ++ +L  T GV I+QEQV+++A + +G++  
Sbjct: 605 RPGPIQGDMVHPYLKRRDGIEPISYPSKEVESVLSRTMGVPIFQEQVIKLAMVAAGFTGG 664

Query: 709 EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
           EAD LRRAM   K    + K K + I G  K G     A  IF+ +  F +YGF +SH+A
Sbjct: 665 EADQLRRAMAAWKKNGNVFKFKNKLIEGMQKRGYDIEFAEQIFKQICGFGEYGFPESHSA 724

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
           ++AV++Y +AW+K +YP  F A+ +  +        +  QDA++ N+ I+P  VN    +
Sbjct: 725 SFAVLAYCSAWLKCYYPECFYASLLNSQPMGFYSPSQLVQDAQRHNVAILPVCVNASQDN 784

Query: 828 FKVGDNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
             V   +    I   +  IKG+     + ++   A++P  S     S+V    +N++ +E
Sbjct: 785 HTVVSQQNGLAIRLGMRQIKGLSEHGIQSVL---ANRP-SSGYRHPSQVKQLSINKKDIE 840

Query: 884 SLVFAGALDCFGYSRMQ 900
            L  A AL      R Q
Sbjct: 841 LLASANALHNVSGDRFQ 857


>gi|239830917|ref|ZP_04679246.1| DNA polymerase III, alpha subunit [Ochrobactrum intermedium LMG 3301]
 gi|239823184|gb|EEQ94752.1| DNA polymerase III, alpha subunit [Ochrobactrum intermedium LMG 3301]
          Length = 1078

 Score =  304 bits (779), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 245/858 (28%), Positives = 400/858 (46%), Gaps = 73/858 (8%)

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247
            H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H +TV +      
Sbjct: 163  HQGQDGRRAERIARFAAEANVPLIATNDVLYHHPDRRALQDVLTATRHYTTVFAAGQLLE 222

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILPRFIEKECD 301
               + +LK   EM+ +F D PEA+  + + A   +F L          PI P        
Sbjct: 223  KNAERHLKPPREMLRLFRDYPEAVAASADFAAPITFRLDELKYAYPDEPIPP-------- 274

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               K     L +    G         I     A      ++ EL +IA++++  YFL V 
Sbjct: 275  --GKTARQHLHDLTWEGAARHYGADTIPPKVQAL-----INKELALIAQLQYEPYFLTVY 327

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A+   I +  GRGS A SV  + L IT ++P    LLFERF++ +R   PD D+D
Sbjct: 328  DIVNYARGEGI-LCQGRGSAANSVVCFCLGITGVNPTEVDLLFERFISAERQEPPDIDVD 386

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +  
Sbjct: 387  FEHERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLTEDVTAALANTVWG 446

Query: 482  DPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                 +S   I D    R+A L   +P + R +E++  L G  RH S H  G V+    L
Sbjct: 447  -----ISGGGI-DKQHIRQAGLDPENPIIRRAVELAITLIGFPRHLSQHVGGFVLTRDRL 500

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------G 593
             + VP+      D    +++   I++ GL+K D L L  LT ++K+LD + Q       G
Sbjct: 501  DETVPIGPAAMKDRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKALDLIHQHKPQLYGG 560

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             K+ L+ +P +D   Y +L T  +LG+FQ+ES      L  ++P    D++  V++ RPG
Sbjct: 561  EKLTLANLPREDKRVYDMLCTGDSLGVFQVESRAQMNMLPRLKPREFYDLVIEVAIVRPG 620

Query: 654  PI--DNIVVYNNRKNGKE--KIVSIHPLIDP------MLKETQGVIIYQEQVMQIAQLLS 703
            PI  D +  Y  R+N +E   + S  P   P      +L +T+GV ++QEQ M+IA   +
Sbjct: 621  PIQGDMVHPYLRRRNKEEPSTLPSPAPEHGPPDELRQILGKTKGVPLFQEQAMRIAMEAA 680

Query: 704  GYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
             ++  EA+ LRRAM    K   +   +++ I G  + G  +T A N F  +  F +YGF 
Sbjct: 681  KFTPDEANQLRRAMATFRKMGTIHTMEQKMIEGMVRRGYDRTFAENCFNQIKGFGEYGFP 740

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN
Sbjct: 741  ESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVN 800

Query: 823  TPCVDF---KVGDNRIYYSLA--AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
                D    +  D R+   L    I G        ++ A   +P+ ++ED   R+   +L
Sbjct: 801  FSQWDNILEETPDIRLALRLGFRQIDGFSKRDT-ELLIADRQEPYRTIEDMHRRL---RL 856

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            +RR    L  A   D FG        SLD  ++ A W  +   N  +      +   + +
Sbjct: 857  DRRAFTLLADA---DAFG--------SLDIDRRAALWAVRRLPN--DETLPLFRAAATSE 903

Query: 938  ITLE---KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
            +  E   K     +S     +         GHPL   +  L   G+           G  
Sbjct: 904  LAEEPRTKLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRR 963

Query: 995  IRLAAMVVSKQQKKTRKG 1012
            +++A +V  +Q+  + KG
Sbjct: 964  MKVAGVVTVRQRPGSAKG 981


>gi|295688141|ref|YP_003591834.1| DNA polymerase III subunit alpha [Caulobacter segnis ATCC 21756]
 gi|295430044|gb|ADG09216.1| DNA polymerase III, alpha subunit [Caulobacter segnis ATCC 21756]
          Length = 1082

 Score =  304 bits (779), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 273/1053 (25%), Positives = 454/1053 (43%), Gaps = 107/1053 (10%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P++  LQ  S++S L GA     +     A    A+ I D N+L   +     A  
Sbjct: 1    MPRRPAYAELQTTSNFSFLRGASHAEELAIAAEALGLTAVGIADRNSLAGVVRAWTAAKQ 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              ++ + GC+LD                    PS++   +  E + RL    +R+  L Q
Sbjct: 61   RQVRVLTGCRLDF---------------MDGTPSLICYPTDREAFARL----TRLLTLGQ 101

Query: 125  GKQSVRIC-LSWLQEI----GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +     C LSW   +    G  GLI+        +D  F        E+ L        
Sbjct: 102  RRAEKGQCHLSWADFLDHSEGQIGLIV----PPRTLDETF--------ERDLTRMAGDLS 149

Query: 180  DRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHS 237
             R ++   R +   D  R S++  L      P+VATN+ L+   E     D++  V  H 
Sbjct: 150  GRSWLAASRAYAAQDLKRLSRLDALGRDAGAPIVATNDVLYHGPERRPLQDIITCVREHC 209

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             +     R     + +LK+ +EM  +F   P A+E TVEI  R  F L       P    
Sbjct: 210  AIHEAGFRLEANAERHLKSAAEMARLFERWPRAVERTVEIVERIGFDLGQIKEQYP---- 265

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E     K     L +   +G   R   G I +   AQ     L+ EL +IA+M +  YF
Sbjct: 266  DEPVPPGKSAMQHLTDLTWSGAAWRYP-GGIPEKVKAQ-----LEEELRLIAKMDYPNYF 319

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            + V D ++ A+K  I +  GRGS A S   Y L +T IDP    LLF RF++ +R   PD
Sbjct: 320  ITVHDIVREARKMGI-LCQGRGSAANSSVCYCLGVTAIDPTEHRLLFTRFISENRGEPPD 378

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  +RR+EV++YV  +YG E  A   T    + ++A+RDVG+AL +       L  
Sbjct: 379  IDVDFEHERREEVMQYVYERYGREYAAICGTVIHYRPRSAIRDVGKALGLTEDVTSLLAG 438

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
             +     + +  + + D     +A    P + R + ++ +L    RH S H  G V+  R
Sbjct: 439  TVWGSWGNGLPEEHLRDAGLDPQA----PEIARAVALATELLKFPRHLSQHVGGFVLTKR 494

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRG 593
             L + VP+      D    +++   I+   L+K D L L  L+ +Q+++  L     Q  
Sbjct: 495  RLDETVPIGNAAMKDRTFIEWDKDDIDSLSLMKVDILALGMLSAIQRAMTMLREDHGQAW 554

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            +K DL+ IP +    Y +L    ++G+FQ+ES      L  ++P    D++  V++ RPG
Sbjct: 555  LK-DLADIPKEVSGVYDMLCKADSVGVFQVESRAQMSMLPRLKPREFYDLVIEVAIVRPG 613

Query: 654  PI--DNIVVYNNRKNGKEKIVSIHPL--------IDPMLKETQGVIIYQEQVMQIAQLLS 703
            PI  D +  Y  RKN  E +    P         +  +L +T GV ++QEQ M +A   +
Sbjct: 614  PIQGDMVHPYLKRKNNIEPVEWPAPSPEHGPEDELKGILGKTFGVPLFQEQAMSLAIEAA 673

Query: 704  GYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
             ++  EAD LR+AM   +      + +++F+ G  + G  +  A   F+ +  F  YGF 
Sbjct: 674  KFTPDEADGLRKAMATFRNLGTPAEYRDKFVEGMVRRGYQRDFAERCFKQIEGFGHYGFP 733

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            +SHAA++A + Y +AW+K  +P  F AA +  +     +  +  +DAR+  ++++PP + 
Sbjct: 734  ESHAASFAKLVYVSAWIKWAWPDVFCAALINSQPMGFYQPAQLVRDAREHGVEVLPPDIL 793

Query: 823  TPCVDF----------------KVGD--NR-----IYYSLAAIKGVGTTTARHIMEASAD 859
                D                 K+ D  NR     +      IKG+       ++ A A+
Sbjct: 794  ASAWDCTLEKGAAYEGFRPRADKIADYANRSQWKAVRLGFRQIKGLKQVDVAVLVHARAE 853

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
                  E          + +R LE L  A A    G +R + L ++  ++       ++R
Sbjct: 854  GARTPGE-----FAQGGVPQRALELLAEADAFAGVGLTRREALWAVKGLKG------EHR 902

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                  + A     F D++ L   +          + R        HP+  Y+P+L++ G
Sbjct: 903  APVQAPLLAGLP-LFEDRVALPAMAKPQD---VAEDYRTTSLSLKAHPIGFYRPMLQRRG 958

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            +   E       G  + +A +V+ +Q+  T KG
Sbjct: 959  VITAERLSTLKDGARVSVAGLVLIRQRPGTAKG 991


>gi|84393894|ref|ZP_00992637.1| putative DNA polymerase III alpha chain [Vibrio splendidus 12B01]
 gi|84375491|gb|EAP92395.1| putative DNA polymerase III alpha chain [Vibrio splendidus 12B01]
          Length = 1030

 Score =  304 bits (779), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 222/732 (30%), Positives = 363/732 (49%), Gaps = 33/732 (4%)

Query: 181 RLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           RL++ LQRH +  D+      V+L+  H+LP+ A    L  +         L A+ +   
Sbjct: 147 RLWIGLQRHLKQTDQQYTDYCVELSQHHQLPITACGGVLMHNANRLPLQHSLTAIKYQRP 206

Query: 240 VSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           +++         +  L++ +++  IF    E LE +  I+  C F L       P     
Sbjct: 207 ITEVGSHLLANAERCLRSINKLSHIFKT--EWLEESNRISELCKFELNSLRYEYP----S 260

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
           E     +   + LR     G + R  QG        +D +Q +D EL +I  + +  +FL
Sbjct: 261 ELIPQGETPMSYLRVLVERGKQARFPQGV------PRDIQQIIDKELGLIGELNYPFFFL 314

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            + D + +AK   I +  GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD 
Sbjct: 315 TIHDIVMFAKSQGI-LYQGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERDEPPDI 373

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DF  +RR+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  +Q+D   K 
Sbjct: 374 DVDFEHERREEVIQYIYQKYGRERAALAATVISYRFKSAVRDVGKALGLQETQLDYFIKN 433

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
             N     +  QA       +   L      + + +  ++ G  RH S H  G VI   P
Sbjct: 434 T-NRRDKSLGWQAQLTQLGLQPDSLKG---QQFIHLVNEIIGFPRHLSQHVGGFVISSGP 489

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
           L +LVP+      D  + Q++   +E  GL+K D L L  L+ ++K  D + +  G  + 
Sbjct: 490 LYELVPVENAAMHDRTIIQWDKDDLETLGLLKVDVLALGMLSAIRKCFDLIKRIHGRSLT 549

Query: 598 LSLIPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
           ++ I    DD + Y ++    T+GIFQ+ES      L  ++P    D++  +++ RPGPI
Sbjct: 550 IAEITRLKDDPQVYCMIQRADTVGIFQIESRAQMSMLPRLKPRTYYDLVIQIAIVRPGPI 609

Query: 656 DNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              +V+    R++G E I      ++ +L  T GV I+QEQV+++A + +G++  EAD L
Sbjct: 610 QGDMVHPFLKRRDGIEPISYPSKDVESVLSRTLGVPIFQEQVIKLAMVAAGFTGGEADQL 669

Query: 714 RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           RRAM   K    + K K + I G  K G     A  IF+ +  F +YGF +SH+A++AV+
Sbjct: 670 RRAMAAWKKNGNVFKFKNKLIEGMQKRGYETEFAEQIFKQICGFGEYGFPESHSASFAVL 729

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
           +Y +AW+K +YP  F A+ +  +        +  QDA++ N+ ++P  VN    +  V +
Sbjct: 730 AYCSAWLKYYYPECFYASLLNSQPMGFYSPSQLVQDAQRHNVVVLPVCVNASQDNHIVVE 789

Query: 833 NR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
           ++    I   L  IKG      + ++   A++P  S     S+V    +N++ +E L  A
Sbjct: 790 HQNGLAIRLGLRQIKGFSEHGIQSVL---ANRP-QSGYRHPSQVKQLSMNKKDIELLASA 845

Query: 889 GALDCFGYSRMQ 900
            AL+     R Q
Sbjct: 846 NALNNVSGDRFQ 857


>gi|259415528|ref|ZP_05739449.1| error-prone DNA polymerase [Silicibacter sp. TrichCH4B]
 gi|259348758|gb|EEW60520.1| error-prone DNA polymerase [Silicibacter sp. TrichCH4B]
          Length = 1126

 Score =  304 bits (778), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 243/850 (28%), Positives = 389/850 (45%), Gaps = 64/850 (7%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSALEFS 59
           +  P +  L V S+++ L GA     ++ + A     AIAITD N+L      +SAL+  
Sbjct: 22  QTGPGYAELCVTSNFTFLTGASHPEELMTRAAELGLAAIAITDRNSLAGVVRAWSALKEL 81

Query: 60  QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
           ++   AG+Q  I     ID      + N      P  P +  L+           +  R+
Sbjct: 82  RREAEAGVQ--IRSHQRIDPSSRQDIGNAATLEKPATPILPKLI-----------VGCRL 128

Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLT-GGSSGPIDRAFFFNSSQVAEKRLLTF---- 174
            L D   Q+  I L   +   +    +LT G    P           +A  R +T     
Sbjct: 129 VLRD--SQTDWIALPRDRTAYSRLTRLLTLGKRRAPKGECHLDTKDLMASCRGMTLIALP 186

Query: 175 --------------KKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLF 219
                         ++ F   +++    R+ G D+   +   Q A     P+VA  + L 
Sbjct: 187 QAELKTAIPDIRRMQQAFPHHVFLGAAPRYDGSDQAYLAACAQAAQVTSAPMVAVGDVLM 246

Query: 220 LSEEDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
                    DVL  +  H T+     R  +  +  LK  ++M  +F   P AL  T+EIA
Sbjct: 247 HRASRRPLADVLTCMREHITIDEIGSRALLNSERRLKAGADMARLFRAHPGALRRTLEIA 306

Query: 279 RRCSFILQVHAPILPR-FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
             CSF L   +   P   ++ E   ++      L   A  GL+ R   G   K       
Sbjct: 307 DTCSFDLGELSYDYPHEIVDGETPQVR------LERLAAKGLKRRYPDGPPEKAITL--- 357

Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
              +  ELN++A + F+ YFL V D +Q+A+  NI +  GRGS A S+  Y L ITD+ P
Sbjct: 358 ---MKKELNLVADLGFAAYFLTVHDIVQYARSQNI-LCQGRGSAANSILCYLLGITDVSP 413

Query: 398 LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
              +++FERF++  R   PD D+DF  +RR+EVI+++  KYG ER     T    +++AA
Sbjct: 414 DMITMVFERFVSRYRGEPPDIDVDFEHERREEVIQWIYQKYGRERAGLCATVIHFRSRAA 473

Query: 458 LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
           +R+VG+ + +       L   I       V L+ I +        + D  + + + +   
Sbjct: 474 IREVGKVMGLSQDVTAGLSGQIWGMSNGGVDLKRIEELG----LNIQDRRLMQTIRLIGD 529

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
           + G  RH S H  G VI    L +L P+      D  V +++   I+  G++K D L L 
Sbjct: 530 IIGFPRHLSQHVGGFVITRGRLDELAPIENAAMEDRTVIEWDKDDIDALGILKVDVLSLG 589

Query: 578 TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            LT LQK+   L    G    ++ +P  D  TY +L     +G+FQ+ES      L  M+
Sbjct: 590 MLTCLQKAFALLQTHEGETWSIASVPQGDQPTYDMLCRADAVGVFQVESRAQMNFLPRMR 649

Query: 637 PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
           P    D++  V++ RPGPI  D +  Y  R++G E+     P ++ + K T GV ++QEQ
Sbjct: 650 PQEFYDLVIEVAIVRPGPIQGDMVQPYIRRRHGLEEPEPFGPELEQVTKRTLGVPLFQEQ 709

Query: 695 VMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            MQIA + +G++  EAD LRR++   +    +   +++FI+G      +  +A   F  +
Sbjct: 710 AMQIAVVGAGFTPEEADHLRRSLASFRRMGTIGTFRDKFINGMLDKDYAPEVAARCFSQI 769

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             FADYGF +SHAAA+A+++Y +AW+K HYP  F  A +  +        +  +DAR+  
Sbjct: 770 EGFADYGFPESHAAAFAMLAYVSAWLKCHYPAVFACALLNSQPMGFYAPAQIVRDAREHG 829

Query: 814 IQIMPPSVNT 823
           ++I P  VN 
Sbjct: 830 VEIRPICVNA 839


>gi|227823700|ref|YP_002827673.1| DNA polymerase III, alpha subunit [Sinorhizobium fredii NGR234]
 gi|254777927|sp|C3M9Z5|DNAE2_RHISN RecName: Full=Error-prone DNA polymerase
 gi|227342702|gb|ACP26920.1| DNA polymerase III, alpha subunit [Sinorhizobium fredii NGR234]
          Length = 1117

 Score =  304 bits (778), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 269/1051 (25%), Positives = 461/1051 (43%), Gaps = 104/1051 (9%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P+F  L   +++S LEGA     ++          + + D N++   +    KA  
Sbjct: 1    MSGEPTFHELGARTNFSFLEGAAPAEEMIVFAKKAGLSGLGVADRNSVAGVVRAHAKAKV 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
                       D   Q   ++     TP      I+       G+  L  L+S +  L  
Sbjct: 61   E----------DYPFQPGARLVFADATP-----DILAYPKNRRGWGHLCRLLS-VGNLRA 104

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K    + L+ L E   + L+++  G   P          ++ E  L   K   G+RLY+
Sbjct: 105  KKGDCTLYLADLLEWQEDLLLIVMPGEGRP--------QPEILEALLEKLKASAGNRLYL 156

Query: 185  NLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQ 242
             L  R+  +DR+  + +  +A + ++ L+ATN++L+         DV+ A+  H  + S 
Sbjct: 157  GLAPRYDSFDRHDFAVLATVARSLDVRLLATNDALYHDPHYRPLADVVTAIREHVPIASA 216

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                +   + +LK   EMV +F D PEA+ N  +  +R SF L               D+
Sbjct: 217  GFLLQKNAERHLKGPKEMVRLFRDYPEAIVNANKFFKRLSFSL---------------DE 261

Query: 303  I--QKEEENELRNKAVAGLEVRLAQGAIAK---GYHAQDYRQRLDFELNVIARMKFSGYF 357
            +  Q  +EN         L   +A+GA+ +   G   +  RQ +++EL +I   K+  YF
Sbjct: 262  LSHQYPDENAEGETPAESLRRLVAEGALERYPSGVPEKVTRQ-IEYELELIHDKKYEPYF 320

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V   +++A+  NI +  GRGS A S   + L ITD+DP +F+LLF+RFL+ DR   PD
Sbjct: 321  LTVHKLVKFARSVNI-LCQGRGSAANSSVCFCLGITDVDPQKFTLLFDRFLSRDRDEPPD 379

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  +RR+EVI+Y+   YG E         S ++++A R+V +A  +       L  
Sbjct: 380  IDVDFEHERREEVIQYIYRTYGKEHAGLTAAVISYRSRSAGREVAKAFGLSEDVQSALVS 439

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
             +      P +     + ++     +ADP   R+L  +  L    RH S H  G VI   
Sbjct: 440  SVWGWGTSPFT----EEQAKGAGLDMADPLTRRVLAYASLLMNFPRHLSQHVGGFVITRD 495

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             L ++VP+      D  + +++   +++  ++K D L L  LT L ++  FL     K  
Sbjct: 496  RLDEVVPIMNTAMPDRYMIEWDKDDLDQLKILKVDVLALGMLTCLARAFRFLEVHYGKPK 555

Query: 598  LSLIPFDDHET--YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
                 ++D +   Y ++    T+G+FQ+ES      L  ++P  + D++  V++ RPGPI
Sbjct: 556  TLAELYEDQQAAVYDMICRADTVGVFQIESRAQMSMLPRLRPREMYDLVIEVAIVRPGPI 615

Query: 656  DNIVV--YNNRKNGKEKIVSI---HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
               +V  Y  R+  + K   +    P +  +L+ T GV ++QEQ MQIA   +G+S SEA
Sbjct: 616  QGNMVHPYLKRREAQRKGEPVDYPSPELKAVLERTLGVPLFQEQAMQIAITAAGFSPSEA 675

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            D LRRAM   K    +   + + I G  +NG  +  A   F  +  F +YGF +SHAA++
Sbjct: 676  DRLRRAMATFKRTGTIHTFERKMIDGMVRNGYEREFAERCFNQIKGFGEYGFPESHAASF 735

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------- 822
            A + Y ++W K +YP  F AA +  +        +  +DAR+  ++I+P  VN       
Sbjct: 736  ASLVYASSWFKAYYPDIFCAALLNSQPMGFYAPAQLVRDAREHGVRILPVDVNHSDWDAL 795

Query: 823  --------TPCVDFKVGDNR--------IYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
                       +D + G+ R        +      +KG+       ++ A   + + S+ 
Sbjct: 796  LEGEAMFRKEAIDPRHGEMRDVIRSGKAVRLGFRLVKGLRQPDMEALV-ARRGEGYRSVH 854

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            D   R     L R VLE L  A A    G  R + L ++  +         N  +  E +
Sbjct: 855  DLWLR---SGLTRAVLERLADADAFRSIGLDRRRALWAVKAL---------NEQSAVERL 902

Query: 927  FAHEKGTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
               +    +D      + L   +     +   ++ R L      HP+   +    +MGI 
Sbjct: 903  PLFDGAGSTDLQVEPAVALPDMAAGEHVI---HDYRYLTLSLKAHPVSFMRGDFARMGIL 959

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
               +   T  G  + +A +V+ +Q+  +  G
Sbjct: 960  SSRDLARTPAGRRVTVAGLVLVRQRPGSANG 990


>gi|254690379|ref|ZP_05153633.1| error-prone DNA polymerase [Brucella abortus bv. 6 str. 870]
 gi|256258633|ref|ZP_05464169.1| error-prone DNA polymerase [Brucella abortus bv. 9 str. C68]
 gi|260755925|ref|ZP_05868273.1| error-prone DNA polymerase [Brucella abortus bv. 6 str. 870]
 gi|260884948|ref|ZP_05896562.1| error-prone DNA polymerase [Brucella abortus bv. 9 str. C68]
 gi|297247471|ref|ZP_06931189.1| error-prone DNA polymerase [Brucella abortus bv. 5 str. B3196]
 gi|260676033|gb|EEX62854.1| error-prone DNA polymerase [Brucella abortus bv. 6 str. 870]
 gi|260874476|gb|EEX81545.1| error-prone DNA polymerase [Brucella abortus bv. 9 str. C68]
 gi|297174640|gb|EFH33987.1| error-prone DNA polymerase [Brucella abortus bv. 5 str. B3196]
          Length = 1077

 Score =  304 bits (778), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 244/861 (28%), Positives = 402/861 (46%), Gaps = 79/861 (9%)

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
            H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R   
Sbjct: 162  HQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLE 221

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILP-RFIEKEC 300
               + +LK   EMV +F D PEA+  T +     +F L          PI P +  ++  
Sbjct: 222  KNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPGKTAQQHL 281

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D+  E     R+     +  ++ QG I K             EL +IAR+++  YFL V
Sbjct: 282  YDLVWE--GAARHYGADMIPPKV-QGLINK-------------ELALIARLEYEPYFLTV 325

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +  A++  I +  GRGS A SV  + L IT ++P +  LLF+RF++ +R   PD D+
Sbjct: 326  YDIVTHAREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFDRFISAERKEPPDIDV 384

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   + 
Sbjct: 385  DFEHERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVW 444

Query: 481  NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                  +  Q I      R+A L   +P + R +E++  L G  RH S H  G V+    
Sbjct: 445  GLSGGGIDRQHI------RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDR 498

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------ 592
            L + VP+           +++   I++ GL+K D L L  LT ++K+ D + Q       
Sbjct: 499  LDETVPIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYG 558

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G K+ L+ +P  D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 559  GEKLTLASLPRKDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRP 618

Query: 653  GPI--DNIVVYNNRKNGKE--KIVSIHPLIDP------MLKETQGVIIYQEQVMQIAQLL 702
            GPI  D +  Y  R++G+E   + S  P   P      +L +T+GV ++QEQ M+IA   
Sbjct: 619  GPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEA 678

Query: 703  SGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            + ++  EA+ LRRAM    K   +   +++ I G    G  +T A N F  +  F +YGF
Sbjct: 679  AKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGF 738

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  V
Sbjct: 739  PESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDV 798

Query: 822  NTPCVDFKVGDN------RIYYSLA-AIKGVGTTTAR--HIMEASADKPFDSLEDFCSRV 872
            N     F   DN       ++ +L    + +   + R   ++ A   +P+ ++ED   R+
Sbjct: 799  N-----FSQWDNILEETPDVHLALRLGFRQIDGFSKRDTELLIADRQEPYRTIEDMHRRL 853

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEK 931
               +L+RR    L  A   D FG        SLD  ++ A W  +   N     +F    
Sbjct: 854  ---RLDRRAFTLLADA---DAFG--------SLDIDRRAALWAVRRLPNDETLPLFRAAA 899

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
             +   +    K     +S     +         GHPL   +  L   G+           
Sbjct: 900  ASELAQEPRTKLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGAD 959

Query: 992  GNNIRLAAMVVSKQQKKTRKG 1012
            G  +++A +V  +Q+  + KG
Sbjct: 960  GRRMKVAGVVTVRQRPGSAKG 980


>gi|17549021|ref|NP_522361.1| error-prone DNA polymerase [Ralstonia solanacearum GMI1000]
 gi|71151835|sp|Q8XRN1|DNAE2_RALSO RecName: Full=Error-prone DNA polymerase
 gi|17431271|emb|CAD17951.1| probable dna polymerase III (alpha chain) protein [Ralstonia
            solanacearum GMI1000]
          Length = 1075

 Score =  303 bits (777), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 283/1048 (27%), Positives = 465/1048 (44%), Gaps = 99/1048 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA   + ++ +  A    A+A+TD  ++   +     A  AG++
Sbjct: 12   PDYAELHCISNFTFLTGASHPHELVARAQAFGYRALALTDECSVAGTVRAHMAAKEAGLK 71

Query: 69   PIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             IIG +  + D Q    +             +VLL    +GY  L E +++  L    K 
Sbjct: 72   LIIGSRFTVRDAQGEPWL------------RLVLLAQDIDGYGNLCECITQARLAAP-KG 118

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT----FKKLFGDRLY 183
              R+    L     E L  L G    P   A          + LL      +++FGDRL 
Sbjct: 119  DYRLLADDLAAPAGE-LAHLRGM---PHCLAILLPDYDPDPRHLLAQAQWCRQVFGDRLS 174

Query: 184  VNLQ---RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            + L+   RH   DR+R + V  ++   ++P+VAT +    S +    HDVL A+  S  +
Sbjct: 175  MALELPLRH-ADDRHRGT-VAAVSEQTDVPMVATGDVAMHSRQRKPLHDVLTAIRLSRPI 232

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIE 297
            ++       + +  ++ R ++   +      + L  +VE+A  C F L   A   P  + 
Sbjct: 233  AECGLALAPSAEQAMRTRMQLAFFYQGERGAQVLRRSVELASLCDFSLDEIAYEYPHEVV 292

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E     +     L  + +AG   R  +   +K       R +LD EL +IA +++  +F
Sbjct: 293  PE----GQTPAGYLLAEVMAGAARRYGKDIPSK------VRAQLDEELALIAELRYEPFF 342

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D +++A+  +I +  GRGS A S   Y L IT+++P   + LF RFL+  R   PD
Sbjct: 343  LTVYDVVRFARSQSI-LCQGRGSAANSAVCYCLGITEVNPESGNTLFARFLSRARNEPPD 401

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF   RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL +    ++++ K
Sbjct: 402  IDVDFEHQRREEVIQYIYKKYGVTRTALAAALITYRTRSALRDVGRALGIDLGVIEQVAK 461

Query: 478  LIP-----NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
                    ++ A     Q +  +S         P V R   + ++L G  RH S H  G 
Sbjct: 462  AQAWWDGRHEFAQRAGQQGLDPES---------PLVQRWAGLIEQLRGFPRHLSQHVGGF 512

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--- 589
            VI    LS+LVP+      +  V Q++   +E   L+K D L L  LT ++++LD L   
Sbjct: 513  VIAQGKLSRLVPIENAAMPERRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMLDAL 572

Query: 590  ----AQRGV--KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
                A  G   K+ +  +P +D  TY ++    T+G+FQ+ES   +  L  ++P    D+
Sbjct: 573  PGRRAHYGAPDKLAMQHLPDEDTATYEMICRAETIGVFQIESRAQQSMLPRLRPRTYYDL 632

Query: 644  IALVSLYRPGPIDNIVV--YNNR----KNGKEKIVSI-HPLIDPMLKETQGVIIYQEQVM 696
            +  V++ RPGPI   +V  Y  R    +NG    V+   P +  +L+ T GV I+QEQVM
Sbjct: 633  VIQVAIVRPGPIQGGMVHPYLQRREAVRNGNPDCVTYPGPEVKAVLERTLGVPIFQEQVM 692

Query: 697  QIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLA 754
            +IA    G++  EAD LRR M   K K  + + + R +    +           +   + 
Sbjct: 693  EIAMKAGGFTADEADRLRRDMAAWKRKGNLTQHQARLMKEMVEVRHYDPAFVEALCRQME 752

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA+YGF +SHAA +A ++Y ++++K H P  F AA +  +        +  Q+AR+  +
Sbjct: 753  GFAEYGFPESHAAGFARLAYVSSFLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSRV 812

Query: 815  QIMPPSVNTPCVDFKV--------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            +++P  V     D  +        G   I   L  I+G+       I+ A A  PF S+E
Sbjct: 813  RVLPADVTASAWDSTLHARPDGAGGQPDIRLGLNRIRGMRPAAGERIVVARAQAPFSSVE 872

Query: 867  DFCSRVDSKKLNRR-VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
            D   R     L+R  +         L   G+ R  L Q+L  +Q+  Q          ++
Sbjct: 873  DLAHRA---ALDRHDLSVLAAANALLSLAGHRRQALWQTL-ALQEPGQ----------DH 918

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                +       + L   S+    V    +   LG     HPL + +P L +M       
Sbjct: 919  ALLRQARPVEAPLVLPAPSLGEEVV---ADYGSLGLSLQSHPLSLLRPRLERMRFVTAAA 975

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
                  G   R   +V  +Q+  T KG+
Sbjct: 976  LAGYRNGQLARACGIVTVRQRPGTAKGT 1003


>gi|88800509|ref|ZP_01116072.1| DNA polymerase III, alpha subunit [Reinekea sp. MED297]
 gi|88776740|gb|EAR07952.1| DNA polymerase III, alpha subunit [Reinekea sp. MED297]
          Length = 1050

 Score =  303 bits (776), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 259/915 (28%), Positives = 436/915 (47%), Gaps = 74/915 (8%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKAC 63
           E    F  L   S++S L  A     ++ + +     A+A+TD  ++   +     +K  
Sbjct: 6   ETDLGFAELHCLSNFSFLRAASHPQELIRRASELGYRALAVTDECSVAGVVRAWRERKDN 65

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-L 122
              I+ I+G +  +D          G T       +VLL    EGY++L +L++RM    
Sbjct: 66  ELDIKLIVGSEFLVD----------GHT-------LVLLARNNEGYRQLCQLITRMRRRA 108

Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
           ++G+   R+   + Q   ++ L +      G + RA   +     EKRL     L  D  
Sbjct: 109 EKGQYDARLH-DFQQTSTSDCLCLYLPPRHGDV-RATLQHLCHQFEKRLW----LLADNS 162

Query: 183 YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVS 241
             N        R RE +V QLA  ++LP+VA+++      E  + HD L A+ A+  + +
Sbjct: 163 LDN-----DAPRLRE-RVEQLAEDYQLPIVASSHVQMHIPERKKLHDCLTAIRANQPIEA 216

Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            + + +   +++L++  ++  IF    + L N+V IA +C F               E D
Sbjct: 217 IRHQLKPNAENHLRSLKKLAHIFP--ADWLHNSVHIADQCQF---------------ELD 259

Query: 302 DIQ-KEEENELRNKAVAGLEVRL-AQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGY 356
            I+ +  ++ L  +  AG  +RL  +  + + + +Q   +  +R+D EL +I    F  Y
Sbjct: 260 SIRYRYPKDVLPGQYSAGEYLRLLVKQGVQRRFGSQVEAELWKRIDTELALIKLKGFEHY 319

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
           FL V D +++A+   I +  GRGSGA SV  Y L IT+++P   SLLFERF++  R   P
Sbjct: 320 FLTVYDIVRFARSRGI-LCQGRGSGANSVVCYVLGITEVNPREASLLFERFISEGRKDPP 378

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           D D+DF  +RR+E+I+Y+  KYG +R A   T  + + K+ALRDV +AL +   QVD L 
Sbjct: 379 DIDVDFEHERREEIIQYLYEKYGRKRAALAATVITYRRKSALRDVAKALGI---QVDLLD 435

Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
           + I N      S   I D+       L+   +D    + +++    RH S H  G VI +
Sbjct: 436 QKIANYGWRYRSKDWI-DEIINDGLGLSAYQIDIFKTLLKEISSFPRHLSQHVGGFVITE 494

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595
             ++ LVP+     +D  V Q++   +E   L+K D L L  L+ ++KSLD +       
Sbjct: 495 GVVADLVPIENASMADRTVIQWDKDDLESLSLMKVDILALGMLSAVRKSLDLIRDFHQQP 554

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
           + +  I  DD + + ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI
Sbjct: 555 IQIQDIDRDDADVFRMIQKADTVGVFQIESRAQMSMLPRLKPHCYYDLVVQVAIVRPGPI 614

Query: 656 --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             D +  Y  R+ GKE +V   P +  +L+ T GV I+QEQV+++A + + ++ +EAD L
Sbjct: 615 HGDMVHPYLLRREGKEPVVYPKPELKEVLERTYGVPIFQEQVIKLAMVAADFNGTEADEL 674

Query: 714 RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           RR+M   K    M     +       NG  +     I   +  F +YGF +SHAA +A+I
Sbjct: 675 RRSMASWKKTGHMSHLHAKLSEKMLANGYPQDYIDRINRQIEGFGEYGFPESHAAGFALI 734

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-- 830
           +Y ++W+K HYP  F  A +           +  QD ++  +++ P  +N    D  +  
Sbjct: 735 AYVSSWLKCHYPAAFCCALLNSLPMGFYSASQLVQDVQRHGVKVRPVDINHSDWDSTLEP 794

Query: 831 -----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                GD  +   L  +KG+    A  ++     +P D  +          L++  +E+L
Sbjct: 795 DNTSTGDAALRLGLRRVKGLSEQAAISLLLY---RPADGFQSLRQLEKIPGLHKGDIEAL 851

Query: 886 VFAGALDCFGYSRMQ 900
             A AL      R Q
Sbjct: 852 ASADALAGIAGHRFQ 866


>gi|256425821|ref|YP_003126474.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
 gi|256040729|gb|ACU64273.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
          Length = 982

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 194/675 (28%), Positives = 332/675 (49%), Gaps = 45/675 (6%)

Query: 211 LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPE 269
           LV  +   F + + Y  H +L AV  + ++SQ +D      D    +  ++   F   P 
Sbjct: 151 LVILHPVTFQNADYYHLHRILRAVDQNILISQLQDHTAAHTDEMFISPGDLFDSFEQYPH 210

Query: 270 ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            + NTV +   C       +P   ++        + E+   LR  A  G+  R       
Sbjct: 211 IISNTVRVMDACQISFDFKSPRNKKYFTTS----EAEDHALLRKLAYEGMLERY------ 260

Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
            G    + ++R++ EL+V+    F+GYFLI  D I++A++       GRGSGA S+ AY 
Sbjct: 261 -GPDNTEAKERIEKELDVVQGQHFNGYFLITWDIIRYAQERGF-FYVGRGSGANSIIAYC 318

Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
           L ITD+DP+  +L FERFLNP R S PDFDIDF    RDE+I YV  KYG    A + T 
Sbjct: 319 LKITDVDPIELNLYFERFLNPYRSSPPDFDIDFSWKDRDEIIAYVFKKYGTAHTALLGTV 378

Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            + Q  A +R++G+   +P  ++D++                   D+ F      D    
Sbjct: 379 TTFQQNATIRELGKVYGLPKQEIDKIL------------------DTPFNPDLSGDSVQQ 420

Query: 510 RLLEISQKL----EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
           ++L  SQ +    +    H S HA GI+I + P+ Q    Y   +      Q +M   E 
Sbjct: 421 KILRYSQLMSNDNKAFPNHLSIHAGGILISEAPIHQHCSTYLPPKG-FSTAQLDMHQAEA 479

Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP--FDDHETYHLLTTKGTLGIFQ 622
            GL KFD L  + L  ++ ++  + + +G  +D+  +     D    H L T  T+G F 
Sbjct: 480 IGLFKFDILSQRGLGHIRDAISIIRENKGDDIDIHNVKAFMRDERVKHALQTVNTIGCFY 539

Query: 623 LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDP 680
           +ES  MRQ L  ++      ++A  S+ RPG   + ++  Y +    ++++V +H ++  
Sbjct: 540 IESPAMRQLLLKLECHDYLTLVAASSVIRPGVAQSGMMRQYVHNYRHQDQVVYLHEIVKE 599

Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK--ERFISGASK 738
           +L ET G+++YQE V++I    +   L++AD+LRRAM  K + + D QK  ++F +   K
Sbjct: 600 VLSETFGIMVYQEDVIKIVSRYANMDLADADILRRAMAGKYRGQGDFQKIEQQFFNNCKK 659

Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            G    +   ++  +A F+ + F+K+H+A++AV SYQ+ ++KT+YP EF+ A +      
Sbjct: 660 LGRPDAVTAELWRQIASFSGFSFSKAHSASFAVESYQSLYLKTYYPAEFMVAVIN-NFGG 718

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
               + + ++ ++  + I PP +N      ++ D+ +Y     ++G+       ++E   
Sbjct: 719 FYNRELYFRELQKTGVTIKPPCINNSDYYTRINDDIVYTGFIHVEGLEVKWMERVLEERG 778

Query: 859 D-KPFDSLEDFCSRV 872
              P+ SLEDF +R+
Sbjct: 779 QYGPYASLEDFATRI 793


>gi|212635132|ref|YP_002311657.1| DNA polymerase III subunit alpha [Shewanella piezotolerans WP3]
 gi|212556616|gb|ACJ29070.1| DNA polymerase III alpha subunit [Shewanella piezotolerans WP3]
          Length = 1057

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 244/923 (26%), Positives = 437/923 (47%), Gaps = 71/923 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L   S+Y+  +GA   + ++++ A     AIAITD  +    ++  + A    IQ +
Sbjct: 2   YAELHAISNYTFFKGASHPHELVEQAAELGYQAIAITDECSFAGIVKAHEAAKKCQIQLL 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSI-VLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           +G                  T F     I VLL    +GY ++ +L++      + K   
Sbjct: 62  VG------------------TEFQLAEGIFVLLAMNRKGYGQISQLITTSRRRAE-KGEY 102

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA--EKRLLT----FKKLFGDRLY 183
           ++ LS LQ+     +++    S   I+       +Q+A  +  +LT      + F  R Y
Sbjct: 103 QLQLSELQQGLDNTILLWQPASLKSINSTLGELPTQIATYQADVLTVGQSLYRQFPQRCY 162

Query: 184 VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           + ++R        + Q+  Q+A   ++P VA  +     ++  +  DVL  + + T ++Q
Sbjct: 163 LLMERSLVAGEALKIQLWTQIAKQLDMPCVAAGSVRMHCQQRQKLLDVLTCIRYGTELAQ 222

Query: 243 KDRPRVT-PDHYLKNRSEMVSIFSDLP-EALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                +   +  LK  +   +++   P E +EN++ IA RC+F L               
Sbjct: 223 AGELLLANAETALKPTA---TLYKRYPKEWIENSLLIAERCNFSL--------------- 264

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQ----GAIAKGYH--AQDYRQRLDFELNVIARMKFS 354
           ++++ E  +E+    ++  E  LAQ    GA+ +  H        + + EL +I  M++ 
Sbjct: 265 EELKYEYPSEVVPSELSASEY-LAQEVYKGALRRFNHQVPASVTAQYEKELVLIKAMQYE 323

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            +FL + D +Q+AK   I +  GRGS A SV  Y L IT++DP + ++LFERF++ +R  
Sbjct: 324 YFFLTIYDIVQYAKSQQI-LHQGRGSAANSVVCYCLGITEVDPTKVNMLFERFVSKERNE 382

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            PD D+DF  +RR+E+I+Y+  KYG ER A   T  S + K+AL DVG+AL +    +D 
Sbjct: 383 PPDIDVDFEHERREEIIQYIYGKYGRERAALAATVISYRFKSALADVGKALGIDKQYLDH 442

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           +   I         L  + + S      +       L  + Q + G  RH S H  G +I
Sbjct: 443 MQHSIDRRDTEVDWLTQLQEKSLLPREGMG----KYLFPLVQSILGFPRHLSQHVGGFII 498

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
              PLS+LVP+     +D  V Q++   +E  GL+K D L L  LT ++K  + ++    
Sbjct: 499 SSGPLSELVPVENASMADRTVIQWDKDDLESLGLLKVDVLALGMLTAIRKCFELISTPEQ 558

Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
           +  +  + ++    Y +L    ++G+FQ+ES      L  ++P C  D++  +++ RPGP
Sbjct: 559 RFTMEQVKWEQAAVYQMLQRGDSIGVFQVESRAQTSMLPRLKPRCYYDLVVQIAIVRPGP 618

Query: 655 I--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           I  D +  Y  R++G EK+      ++ +L  T GV I+QEQV+Q+A + +G+S  EAD 
Sbjct: 619 IQGDMVHPYLKRRDGLEKVTYPSKEVESVLSRTMGVPIFQEQVIQLAMVAAGFSGGEADK 678

Query: 713 LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           LRRAM   K   E+ + +++ + G    G S   +  I+  +  F +YGF +SH+A++A+
Sbjct: 679 LRRAMASWKKTGELQQFEDKLLKGMLSRGYSAEFSKQIYRQIRGFGEYGFPESHSASFAL 738

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD---F 828
           ++Y +A++K H+P  F  + +  +        +  QD ++  + ++    N         
Sbjct: 739 LAYVSAYLKFHHPAAFCCSLLNSQPMGFYSPSQLIQDVQRHGVVVLAVCANRSQWQHTLV 798

Query: 829 KVGDNRIYYSLA--AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            + DNRI   L    +KG+       +++   ++ F  ++    ++    + R  LE+L 
Sbjct: 799 TIADNRIAIRLGFRLVKGLNRQEIEKLIKQRPEQGFTHID----QIYYLGIARHELETLA 854

Query: 887 FAGALDCFGYSRMQLLQSLDNIQ 909
            A A       R Q+   L   Q
Sbjct: 855 SADAFSQIAGHRHQVRWQLSACQ 877


>gi|269962022|ref|ZP_06176376.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833106|gb|EEZ87211.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1024

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 223/745 (29%), Positives = 358/745 (48%), Gaps = 62/745 (8%)

Query: 181 RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           RL+V +QRH G D     +    LA   +LP+ A    L  + E      VL AV H   
Sbjct: 145 RLWVAIQRHLGGDDDAYTTHCELLANEFQLPITACGGVLMHAVERLPLQHVLTAVKHGCS 204

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           V +    R++  +  L+  +++  I+    E L  +  IA  C F L             
Sbjct: 205 VDKLGFGRLSNAERALRPLNKLSRIYR--AEWLAESTHIASLCEFNL------------- 249

Query: 299 ECDDIQKEEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              D++ E   EL           R     G ++R  +G  A      D  Q ++ EL +
Sbjct: 250 --SDLKYEYPTELIPDGHTPTSYLRLLVERGKKLRFPEGVPA------DIHQTIENELTL 301

Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
           I  +++  YFL + D + +AK+  I +  GRGS A SV  Y L IT +DP + S+LFERF
Sbjct: 302 IEELEYHYYFLTIHDIVMFAKQQGI-LYQGRGSAANSVVCYCLEITAVDPRQISVLFERF 360

Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
           ++ +R   PD D+DF  +RR+EVI+Y+  KYG ER A   T  S + K+A+R+VG+AL +
Sbjct: 361 ISRERKEPPDIDVDFEHERREEVIQYIYKKYGRERAALAATVISYRFKSAVREVGKALGI 420

Query: 468 PYSQVDRLCKLIP-NDPAHPVSLQAIADDSRFREARLADPSV--DRLLEISQKLEGLYRH 524
             +Q+D   K +   D +     Q I       E  L   S+   + +++  ++ G  RH
Sbjct: 421 EETQLDFFIKNVNRRDRSQGWQAQII-------ELGLQPESLKGQQFIQLVNEIIGFPRH 473

Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            S H  G VI   PL +LVP+      D  + Q++   +E   L+K D L L  L  ++K
Sbjct: 474 LSQHVGGFVISSGPLYELVPVENASMEDRTIIQWDKDDLESLKLLKVDVLALGMLNAIRK 533

Query: 585 SLDFLA---QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
               +    QR + +       DD   Y ++    T+G+FQ+ES      L  ++P    
Sbjct: 534 CFQLVEKHHQRSLSIAEITRLQDDPHVYRMIQKADTVGVFQIESRAQMSMLPRLKPARYY 593

Query: 642 DIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
           D++  +++ RPGPI   +V+    R+NG+E I      +  +L+ T GV I+QEQV+++A
Sbjct: 594 DLVVQIAIVRPGPIQGDMVHPFLKRRNGEEPISYPSEEVKSVLERTMGVPIFQEQVIKLA 653

Query: 700 QLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            + +G+S  EAD LRRAM   K   ++ K K + I G  + G     A  IF+ +  F +
Sbjct: 654 MVAAGFSGGEADQLRRAMAAWKKNGDLAKFKPKLIDGMRERGYDLEFAERIFDQICGFGE 713

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           YGF +SH+A++AV++Y +AW+K +YP EF  A +  +        +  QDAR+  ++++P
Sbjct: 714 YGFPESHSASFAVLAYCSAWLKFYYPAEFYTALLNSQPMGFYSPSQLIQDARRHGVEVLP 773

Query: 819 PSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
             +N       +     G   +      +KG    +A  ++E      + S+++    V 
Sbjct: 774 VCINHSSYQHHLVKRPNGRLGVQLGFRLVKGFNQESASRLVERRPTTGYRSIQE----VK 829

Query: 874 SKKLNRRVLESLVFAGALDCFGYSR 898
               NRR +E L  A A      +R
Sbjct: 830 QILRNRRDIELLASANAFQILSGNR 854


>gi|184200802|ref|YP_001855009.1| error-prone DNA polymerase [Kocuria rhizophila DC2201]
 gi|183581032|dbj|BAG29503.1| error-prone DNA polymerase [Kocuria rhizophila DC2201]
          Length = 1235

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 223/814 (27%), Positives = 385/814 (47%), Gaps = 75/814 (9%)

Query: 271  LENTVEIARRCSFI----LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
            L +T  +A RC       L +  P++P   E     +  + + EL  +  AGL  RL  G
Sbjct: 348  LVDTHHLAERCRLDPQGDLGIGTPVIP---EASVLGLSGDPDRELARRCYAGL-ARLHAG 403

Query: 327  A----IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                    G + +  R+RL+ EL+VI+++ F+GYFL V +        ++     RGSG 
Sbjct: 404  EDWDRTVPGLNRESLRERLERELSVISQLGFAGYFLTVGEVSDLMSAMDVRHA-ARGSGV 462

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
             S+  + L I+  DPL + L+FERFL+P R ++PD DID    RR +V R +  ++G  R
Sbjct: 463  SSLVVHLLGISPADPLEYDLVFERFLSPLRPNLPDIDIDMESARRHDVYRRIFERFGPRR 522

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV--------SLQAIAD 494
            V  +    + +++ A+RD G AL +    VD +   +   P   +         L  +A 
Sbjct: 523  VTLMSMQNAYRSRGAVRDAGLALGLGPQDVDHVAGQLWRVPGGTLREEISRRPELAPLA- 581

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
              R R+ R     +D L++++++L+ L RH S H  G+++ D  L    P+ +     LP
Sbjct: 582  -QRLRDNR----QMDLLVDLTERLDRLPRHISMHPCGVILSDTTLLDRTPV-QASGIGLP 635

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVDLSLIPFDDHETYHL 611
            ++Q++   ++  GLIK D LG++  + L  ++  +A+        DL  +P DD +T+ L
Sbjct: 636  MSQYDKHDMDPMGLIKLDILGVRMQSTLAHAVAEVARLHPHEALPDLDTMPRDDPDTFRL 695

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            +++  TLG FQ+ES G R+ +  M P+   D++  +SL+RPGP+   +V  Y + ++G  
Sbjct: 696  ISSTHTLGCFQIESPGQRELIGTMGPEEFNDLVVDISLFRPGPMQANMVRPYLDARHGWS 755

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
              V  HP ++ +L ET+GV +Y EQ+M+I   ++G  L  ADV RR +G   +E ++   
Sbjct: 756  TPVYPHPDLEEILAETRGVAVYHEQIMRIMDRMTGCGLGRADVWRRLLGSPGEEPVETA- 814

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F  GA   G ++ +   ++E+L  F  +GF K+H  A+AV +YQ+AW+KTH+P  F+A
Sbjct: 815  --FREGARARGYTRAVIDTVWEILHAFGSFGFCKAHGVAFAVPTYQSAWLKTHHPEAFMA 872

Query: 790  ASMTLEMD-NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------------------ 830
                 E D  +   +    +AR+  I ++ P VN      +V                  
Sbjct: 873  G--VWEHDPGMYPARLLVGEARRMGIPVLGPDVNRSGEHHRVEAVTPRPGTVVSGDLDAG 930

Query: 831  ------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
                  G   I  SL+AI G+ +     ++   A +P+   E+  +     + +RR L+ 
Sbjct: 931  IPHTQDGAWGIRMSLSAITGISSAEIERLL---AGQPY---ENLAAVRARARPSRRSLQR 984

Query: 885  LVFAGALDCFGY------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            L  AGALD   +      SR  ++  L +  +        RT   +   A   G      
Sbjct: 985  LATAGALDGLLHGSGTRASRADMVHFLTDRAQLPARGSAGRTGPGQGQLALPLGDVDLTS 1044

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
               +        R   E   +    S H +D +  ++R       ++ +    G+ + +A
Sbjct: 1045 LPARLPELTPQERVRAEMETMDIEVSAHLMDSHAELVRAYRATRAQDLLGLRSGSEVVVA 1104

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + VS      R G R+ +++  + +   +  FF
Sbjct: 1105 GVRVSTMTPPMRSGRRVVFISLDDGSGAVDCTFF 1138


>gi|103488257|ref|YP_617818.1| DNA polymerase III, alpha subunit [Sphingopyxis alaskensis RB2256]
 gi|98978334|gb|ABF54485.1| DNA polymerase III, alpha subunit [Sphingopyxis alaskensis RB2256]
          Length = 1092

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 274/1035 (26%), Positives = 459/1035 (44%), Gaps = 101/1035 (9%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL-------EFSQ 60
             P F  L   ++YS L GA     ++ +        I I D N++   +       +  +
Sbjct: 7    GPGFAELVAATNYSFLRGASHPAEMVKEALDLGMSGIGIADRNSVAGVVRALTGLRKLHE 66

Query: 61   KACAAGI-----QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
             A   GI     Q ++G +L  D                  P IV   +T  G+ RL   
Sbjct: 67   DAAEEGIELPPFQLVVGARLVFD---------------DGTPDIVAYPTTRHGWGRL--- 108

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             +RM  +   + +   C+  L+ +      M+    +G  D A            L   K
Sbjct: 109  -TRMLTIGNRRTTKGGCVMKLKNLLIHCQDMILIAMAGEKDEAV-----------LRRLK 156

Query: 176  KLFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            K+  + L++     R G DR   +++  LA    +P++ATN++L+ + E    HDV+  +
Sbjct: 157  KIAPNALWLGATMPREGSDRRHLARLQSLADRVGIPMLATNDALYATREQRPLHDVVTCI 216

Query: 235  AHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
               T + +  R  R   + +LK+  EM  +F   P A++ ++ I  R  F L+      P
Sbjct: 217  REGTTLHEAGRLLRANGERHLKSPQEMRRLFRACPSAVDESIRILDRIGFSLRDLEYEYP 276

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
                 E  D Q   E+ + + A      RL    +      Q +++ LD EL++I +  F
Sbjct: 277  HEPVPEGWDPQSWLEHMVLDAA-----NRLHPQGL-----PQRWQEVLDEELSLIRKCNF 326

Query: 354  SGYFLIVADFIQWAKKNNIPV-GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            + YFL V D +++A+  + P+   GRGS A S+  Y L IT IDP+  +LLF RFL+ +R
Sbjct: 327  ACYFLTVHDIVKYARSQDPPILCQGRGSAANSLVCYLLEITSIDPIANNLLFTRFLSEER 386

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
               PD D+DF  +RR+EV++Y+  ++   R     T    + ++A+R+VG+AL +     
Sbjct: 387  REPPDIDVDFEHERREEVMQYIYRRHTRRRAGIAATVIHYRPRSAVREVGKALGLSEDVT 446

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD---RLLEISQKLEGLYRHASTHA 529
             RL           + ++      RF EA L DP  D   RL  I  +L    RH S H 
Sbjct: 447  ARLADTSWGSWGSEMPVE------RFVEAGL-DPEQDDMARLQWIVAQLLTFPRHLSQHV 499

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G V+ +  L + VP++    ++    +++   +++  L+K D L L  LT ++K  D +
Sbjct: 500  GGYVLTEDRLDETVPIHNAAMAERTFIEWDKDDLDELRLMKVDVLALGMLTCIRKCFDLM 559

Query: 590  AQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
               G+   DL  +P +D   Y +L    ++G+FQ+ES      L  ++P    D++  V+
Sbjct: 560  RLHGLGDHDLKSVPPEDPVVYDMLCKGDSIGVFQVESRAQINMLPRLRPRKFYDLVIQVA 619

Query: 649  LYRPGPIDNIVV--YNNRKNGKEKIVSIHPL--------IDPMLKETQGVIIYQEQVMQI 698
            + RPGPI+  +V  Y  R+N +EK     PL        ++ +L +T+GV ++QEQ M++
Sbjct: 620  IVRPGPIEGDMVHPYLRRRNKEEK--PELPLRAGAEANELEAVLGKTEGVPLFQEQAMKL 677

Query: 699  AQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            A + +G+S  EA+ LRRAM   +    + + +E+ I G  + G     A   F+ +  F 
Sbjct: 678  AIVAAGFSPDEANGLRRAMATFRNVGTIHQYREKMIGGMVRRGYEADFAARCFKQIEGFG 737

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             YGF +SHA ++A + Y ++W+K H+P  F    +  +        +  +DAR+  +++ 
Sbjct: 738  SYGFPESHAQSFAKLVYVSSWLKCHHPAVFTCGLLNSQPMGFYAPAQLVRDAREHGVEVR 797

Query: 818  PPSVNTPCVDFKVGDNRIYYSLA------AIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
               VN    D  + + R   SLA       + G     A  I+ A     F S+ED   R
Sbjct: 798  EVDVNASHWDNGL-ERRADGSLALRLGFRQVDGFREAWADQIVAARTTS-FASVEDLARR 855

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
                KL  R L  L  A A    G  R   L         A+ V +          A+E 
Sbjct: 856  A---KLPPRALRLLAEADACRSMGLDRRPALWE-------ARRVRQGVLPLFGAAGANEL 905

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
            G   D        VE+    ++  +        GHP+   +    + G+    E  A   
Sbjct: 906  GHEEDAALPPTPMVEHVLTDYQTTR----LSLKGHPMAFLRRDFARAGVLSAVEVAAAKN 961

Query: 992  GNNIRLAAMVVSKQQ 1006
            G  +R A +V+ +Q+
Sbjct: 962  GAIVRTAGVVLIRQR 976


>gi|298294344|ref|YP_003696283.1| DNA polymerase III subunit alpha [Starkeya novella DSM 506]
 gi|296930855|gb|ADH91664.1| DNA polymerase III, alpha subunit [Starkeya novella DSM 506]
          Length = 1140

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 244/855 (28%), Positives = 392/855 (45%), Gaps = 84/855 (9%)

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
             +G DR R + +  LA    +PL+ATN+ L+    + +  +VL  +     +    R   
Sbjct: 213  RKGDDRRRLAALKALATKTRVPLLATNDVLYHHPAERDLQNVLTCIREGVTIEAAGRLLD 272

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILPRFIEKECD 301
               + +LK   EMV +F D PEA+E T     R  F L          P+ P +  +   
Sbjct: 273  ANAERHLKPPQEMVRLFRDAPEAVEETRNFLARIDFSLGDLKYEYPEEPVPPGYTPQ--- 329

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               K EE   +  A+     R  +G   K         +L+ EL +I  + ++ YFL + 
Sbjct: 330  --AKLEELTWQRAAI-----RYPEGVPDK------VVGQLNTELALIGELGYASYFLTIR 376

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +++A+K  I +  GRGS A S   Y L IT +DP    LLFERFL+ +R   PD D+D
Sbjct: 377  DIVEFAEKERI-LCQGRGSAANSAVCYVLGITAVDPFESELLFERFLSKERREPPDIDVD 435

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EVI+YV  +YG  R   + T  S + ++A+RDVG+AL +      RL   +  
Sbjct: 436  FEHERREEVIQYVYRRYGRHRAGIVATVISYRPRSAIRDVGKALGLTEDVTARLAGTVWG 495

Query: 482  DPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                 +       DS+ REA L  ++P V R + ++ +L G  RH S H  G V+    L
Sbjct: 496  SWGDDIK------DSQAREAGLDPSNPMVARAIGLAVRLLGFPRHLSQHVGGFVLTQNRL 549

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
             + VP+      D    +++   I+  GL+K D L L  LT ++K+LD + +  G+   L
Sbjct: 550  DETVPIGNAAMKDRTFIEWDKDDIDTLGLLKVDVLALGMLTCIRKALDLMREHEGIDYGL 609

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P +  + Y +L    ++G+FQ+ES      L  ++P  + D++  V++ RPGPI   
Sbjct: 610  AEVPREQPDVYAMLQKGDSIGVFQVESRAQINMLPRLKPRKLYDLVIQVAIVRPGPIQGN 669

Query: 659  VV--YNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            +V  Y  R+   E IV   P        L D +L+ T GV ++QEQ M++A + + +S  
Sbjct: 670  MVHPYLRRRERSEPIVYPSPGPQYRQDELYD-VLERTLGVPLFQEQAMKLAMVAAEFSSE 728

Query: 709  EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EA+ LRRAM   +    + K +   I    + G  +  A   FE +  F +YGF +SHAA
Sbjct: 729  EANQLRRAMATFRNLGTIGKFQGMLIGRMVRRGYERAFAERCFEQIKGFGEYGFPESHAA 788

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++A + Y +A++K  +P  F  A +  +        +  +DAR+  ++I PP VN    D
Sbjct: 789  SFAKLVYISAFIKCRHPAAFAVALLNSQPMGFYAPAQIVRDAREHGVEIRPPDVNYSFHD 848

Query: 828  FKVGDNRIYYSLA------AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
              +  +    SLA       I G     +  ++EA A      +E    R     L    
Sbjct: 849  NTLERDAPGESLALRLGLRQIDGFSEEWSERLVEARAGGFVRDIETLFRRAG---LPVGA 905

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIF----AHEKGTFSD 936
            L  L  A A    G  R           + A W+ +   N     +F    A E G  +D
Sbjct: 906  LRKLADADAFGSLGLDR-----------REAAWIVRRLPNDAPLPLFAAAQARELGADAD 954

Query: 937  K-ITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
              + L    E+ +V+  + R             GHP+ + + +    G+    E  A   
Sbjct: 955  AHLPLMPLPEQIAVDYQTTRLS---------LKGHPMGMLREVFAAEGVASSAEVSALRD 1005

Query: 992  GNNIRLAAMVVSKQQ 1006
            G  +R A +V+ +Q+
Sbjct: 1006 GTYVRAAGVVLVRQR 1020


>gi|19548822|gb|AAL90808.1| polymerase III subunit alpha [Escherichia coli]
          Length = 318

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 152/319 (47%), Positives = 220/319 (68%), Gaps = 13/319 (4%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
           +TLT++  +L+ + +R  K     +D++ IP DD +++ +L    T  +FQLES GM+  
Sbjct: 180 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 239

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKE 684
           ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E+I        H  + P+L+ 
Sbjct: 240 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 299

Query: 685 TQGVIIYQEQVMQIAQLLS 703
           T G+I+YQEQVMQIAQ+LS
Sbjct: 300 TYGIILYQEQVMQIAQVLS 318


>gi|156975141|ref|YP_001446048.1| DNA polymerase III alpha chain [Vibrio harveyi ATCC BAA-1116]
 gi|171769810|sp|A7MUN4|DNAE2_VIBHB RecName: Full=Error-prone DNA polymerase
 gi|156526735|gb|ABU71821.1| hypothetical protein VIBHAR_02868 [Vibrio harveyi ATCC BAA-1116]
          Length = 1024

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 220/742 (29%), Positives = 357/742 (48%), Gaps = 56/742 (7%)

Query: 181 RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           RL+V +QRH G D     +    LA   +LP+ A    L  + E      VL AV H   
Sbjct: 145 RLWVAIQRHLGGDDDAYTTHCELLANEFQLPIAACGGVLMHAVERLPLQHVLTAVKHGCS 204

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           V +    R++  +  L+  +++  I+    + LE +  IA  C F L             
Sbjct: 205 VDKLGFSRLSNAERALRPLNKLSRIYKS--KWLEESTHIADLCEFKL------------- 249

Query: 299 ECDDIQKEEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              D++ E   EL           R     G ++R  +G  A      D  Q ++ EL +
Sbjct: 250 --SDLKYEYPTELIPNGYTPTSYLRMLVERGKKLRFPEGIPA------DIHQTIENELAL 301

Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
           I  +++  YFL + D + +AK+  I +  GRGS A SV  Y L IT +DP + S+LFERF
Sbjct: 302 IEELEYHYYFLTIHDIVMFAKQQGI-LYQGRGSAANSVVCYCLEITAVDPRQISVLFERF 360

Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
           ++ +R   PD D+DF  +RR+EVI+Y+  KYG ER A   T  S + K+A+R+VG+AL +
Sbjct: 361 ISREREEPPDIDVDFEHERREEVIQYIYKKYGRERAALAATVISYRFKSAVREVGKALGI 420

Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
             +Q+D   K + N        QA   +   +   L      + +++  ++ G  RH S 
Sbjct: 421 EETQLDFFIKNV-NRRDRTQGWQAQIIELGLQPESLKG---QQFIQLVNEITGFPRHLSQ 476

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           H  G VI   PL +LVP+      D  + Q++   +E   L+K D L L  L  ++K   
Sbjct: 477 HVGGFVISSGPLYELVPVENASMEDRTIIQWDKDDLESLKLLKVDVLALGMLNAIRKCFQ 536

Query: 588 FLA---QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            +    QR + +       DD   Y ++    T+G+FQ+ES      L  ++P    D++
Sbjct: 537 LVEKHHQRSLSIAEITRLQDDPHVYRMIQKADTVGVFQIESRAQMSMLPRLKPARYYDLV 596

Query: 645 ALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
             +++ RPGPI   +V+    R+NG+E I      +  +L+ T GV I+QEQV+++A + 
Sbjct: 597 VQIAIARPGPIQGDMVHPFLKRRNGEEPISYPSEEVKSVLERTMGVPIFQEQVIKLAMVA 656

Query: 703 SGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
           +G+S  EAD LRRAM   K   ++ K K + I G  + G     A  IF+ +  F +YGF
Sbjct: 657 AGFSGGEADQLRRAMAAWKKNGDLAKFKPKLIDGMRERGYDLEFAERIFDQICGFGEYGF 716

Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            +SH+A++AV++Y +AW+K +YP EF  A +  +        +  QDAR+  ++++P  +
Sbjct: 717 PESHSASFAVLAYCSAWLKFYYPAEFYTALLNSQPMGFYSPSQLIQDARRHGVEVLPVCI 776

Query: 822 NTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
           N       +     G   +      +KG    +A  ++E      + ++++    V    
Sbjct: 777 NHSSYQHHLVQRPNGRLGVQLGFRLVKGFNQESASRLVERRPSTGYRAIQE----VKQIL 832

Query: 877 LNRRVLESLVFAGALDCFGYSR 898
            NRR +E L  A A      +R
Sbjct: 833 RNRRDIELLASADAFQILSGNR 854


>gi|153834883|ref|ZP_01987550.1| putative DNA polymerase III, alpha subunit [Vibrio harveyi HY01]
 gi|148868701|gb|EDL67780.1| putative DNA polymerase III, alpha subunit [Vibrio harveyi HY01]
          Length = 1024

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 222/745 (29%), Positives = 358/745 (48%), Gaps = 62/745 (8%)

Query: 181 RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           RL+V +QRH G D     +    LA   +LP+ A    L  + E      VL AV H   
Sbjct: 145 RLWVAIQRHLGGDDDAYTTHCELLANEFQLPITACGGVLMHAVERLPLQHVLTAVKHGCS 204

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           V +    R++  +  L+  +++  I+    E LE +  IA  C F L             
Sbjct: 205 VDKLGFGRLSNAERALRPLNKLSRIYKS--EWLEESTHIADLCEFKL------------- 249

Query: 299 ECDDIQKEEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              D++ E   EL           R     G ++R  +G  A      D  Q ++ EL +
Sbjct: 250 --SDLKYEYPTELIPNGYTPTSYLRMLVERGKKLRFPEGIPA------DIHQTIENELAL 301

Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
           I  +++  YFL + D + +AK+  I +  GRGS A SV  Y L IT +DP + S+LFERF
Sbjct: 302 IEELEYHYYFLTIHDIVMFAKQQGI-LYQGRGSAANSVVCYCLEITAVDPRQISVLFERF 360

Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
           ++ +R   PD D+DF  +RR+EVI+Y+  KYG ER A   T  S + K+A+R+VG+AL +
Sbjct: 361 ISREREEPPDIDVDFEHERREEVIQYIYKKYGRERAALAATVISYRFKSAVREVGKALGI 420

Query: 468 PYSQVDRLCKLIP-NDPAHPVSLQAIADDSRFREARLADPSV--DRLLEISQKLEGLYRH 524
             +Q+D   K +   D +     Q I       E  L   S+   + +++  ++ G  RH
Sbjct: 421 EETQLDFFIKNVNRRDRSQGWQAQII-------ELGLQPESLKGQQFIQLVNEIIGFPRH 473

Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            S H  G VI   PL +LVP+      D  + Q++   +E   L+K D L L  L  ++K
Sbjct: 474 LSQHVGGFVISSGPLYELVPVENASMEDRTIIQWDKDDLESLKLLKVDVLALGMLNAIRK 533

Query: 585 SLDFLA---QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
               +    QR + +       DD   Y ++    T+G+FQ+ES      L  ++P    
Sbjct: 534 CFQLVEKHHQRSLSIAEITRLQDDPHVYRMIQKADTVGVFQIESRAQMSMLPRLKPARYY 593

Query: 642 DIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
           D++  +++ RPGPI   +V+    R+NG+E I      +  +L+ T GV I+QEQV+++A
Sbjct: 594 DLVVQIAIVRPGPIQGDMVHPFLKRRNGEEPISYPSEEVKSVLERTMGVPIFQEQVIKLA 653

Query: 700 QLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            + +G+S  EAD LRRAM   K   ++ K K + I G  + G     A  IF+ +  F +
Sbjct: 654 MVAAGFSGGEADQLRRAMAAWKKNGDLAKFKPKLIDGMRERGYDLEFAERIFDQICGFGE 713

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           YGF +SH+A++AV++Y +AW+K +YP EF  A +  +        +  QDAR+  ++++P
Sbjct: 714 YGFPESHSASFAVLAYCSAWLKFYYPAEFYTALLNSQPMGFYSPSQLIQDARRHGVEVLP 773

Query: 819 PSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
             +N       +     G   +      +KG    +A  ++E      + ++++    V 
Sbjct: 774 VCINHSSYQHHLVQRPNGRLGVQLGFRLVKGFNQESASRLVERRPSTGYRAIQE----VK 829

Query: 874 SKKLNRRVLESLVFAGALDCFGYSR 898
               NRR +E L  A        +R
Sbjct: 830 QILRNRRDIELLASANTFQILSGNR 854


>gi|218709034|ref|YP_002416655.1| putative DNA polymerase III subunit alpha [Vibrio splendidus LGP32]
 gi|218322053|emb|CAV18108.1| putative DNA polymerase III alpha chain [Vibrio splendidus LGP32]
          Length = 1030

 Score =  302 bits (773), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 239/859 (27%), Positives = 404/859 (47%), Gaps = 75/859 (8%)

Query: 181  RLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            RL++ LQRH +  D++     V+L+  H+LP+ A    L  +         L A+ +   
Sbjct: 147  RLWIGLQRHLKQTDQHYTDYCVELSQHHQLPITACGGVLMHNANRLPLQHSLTAIKYQRP 206

Query: 240  VSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +++         +  L++ +++  IF    E LE +  I+  C F               
Sbjct: 207  ITEVGSHLLANAERCLRSINKLSHIFK--AEWLEESNRISELCEF--------------- 249

Query: 299  ECDDIQKEEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
            E D+++ E  +EL           R     G   R  QG         + +Q ++ EL +
Sbjct: 250  ELDNLRYEYPSELIPQGETPMSYLRMLVEKGKRTRFPQGV------PNNIQQIIEKELGL 303

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I  + +  +FL + D + +AK   I +  GRGS A SV  Y L IT +DP + S+LFERF
Sbjct: 304  IDELDYPFFFLTIHDIVMFAKSQGI-LYQGRGSAANSVVCYCLEITSVDPRQISVLFERF 362

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            ++ +R   PD D+DF  +RR+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +
Sbjct: 363  ISKERDEPPDIDVDFEHERREEVIQYIYKKYGRERAALAATVISYRFKSAVRDVGKALGL 422

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
              +Q+D   K   N     +  QA       +   L      + + +  ++ G  RH S 
Sbjct: 423  QETQLDYFIKNT-NRRDKSLGWQAQLTQLGLQPDSLKG---QQFIHLVNEIIGFPRHLSQ 478

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            H  G VI   PL +LVP+      D  + Q++   +E  GL+K D L L  L+ ++K  D
Sbjct: 479  HVGGFVISSGPLYELVPVENAAMHDRTIIQWDKDDLETLGLLKVDVLALGMLSAIRKCFD 538

Query: 588  FLAQ-RGVKVDLSLIPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
             + +  G  + ++ I    DD + Y ++    T+GIFQ+ES      L  ++P    D++
Sbjct: 539  LIKRIHGRSLTIAEITRLKDDPQVYGMIQRADTVGIFQIESRAQMSMLPRLKPRTYYDLV 598

Query: 645  ALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
              +++ RPGPI   +V+    R++G E I      ++ +L  T GV I+QEQV+++A + 
Sbjct: 599  IQIAIVRPGPIQGDMVHPFLKRRDGIEPISYPSKDVESVLSRTLGVPIFQEQVIKLAMVA 658

Query: 703  SGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            +G++  EAD LRRAM   K    + K K + I G  K G     A  IF+ +  F +YGF
Sbjct: 659  AGFTGGEADQLRRAMAAWKKNGNVFKFKNKLIEGMQKRGYETGFAEQIFKQICGFGEYGF 718

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SH+A++AV++Y +AW+K +YP  F A+ +  +        +  QDA++ N+ ++P  V
Sbjct: 719  PESHSASFAVLAYCSAWLKCYYPECFYASLLNSQPMGFYSPSQLVQDAQRHNVVVLPVCV 778

Query: 822  NTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            N    +  V  ++    I   L  IKG      + ++   A++P  S     S+V    +
Sbjct: 779  NASQDNHTVIAHQNGLAIRLGLRQIKGFSEHGIQSVL---ANRP-QSGYRHPSQVKQLSM 834

Query: 878  NRRVLESLVFAGALDCFGYSRMQ----LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            N++ +E L  A AL      R Q    ++ S  ++  ++Q V  +  + H+    H+   
Sbjct: 835  NKKDIELLASANALHNVSGDRFQTRWAIMDSASDLPLFSQ-VYGDVGDGHDEHALHKPNE 893

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
              D   LE F+              +G   + HP+ + +   R       ++ +     +
Sbjct: 894  MQD--LLEDFT-------------SVGISLNKHPITLLEEAGRLGRFTHMKDLIQQRHKS 938

Query: 994  NIRLAAMVVSKQQKKTRKG 1012
             + +  +V  KQ   T  G
Sbjct: 939  MVTVVGLVTGKQAPGTAAG 957


>gi|238060269|ref|ZP_04604978.1| error-prone DNA polymerase [Micromonospora sp. ATCC 39149]
 gi|237882080|gb|EEP70908.1| error-prone DNA polymerase [Micromonospora sp. ATCC 39149]
          Length = 535

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 173/496 (34%), Positives = 270/496 (54%), Gaps = 26/496 (5%)

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
           H + YRQ LD EL +I  + F GYFL+V D + + ++ +I    GRGS A S   YAL I
Sbjct: 29  HPEAYRQ-LDHELRMIDELGFPGYFLVVYDIVAFCRRADI-YCQGRGSAANSAVCYALRI 86

Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
           T++D +R  LLFERFL P+R   PD D+D   DRR+EVI++V  +YG E  AQ+    S 
Sbjct: 87  TNVDAVRHRLLFERFLAPERDGPPDIDVDIESDRREEVIQHVYARYGREHAAQVANVVSY 146

Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS--VDR 510
           + ++A+RDV +A      Q D   + I                 R+      D     ++
Sbjct: 147 RPRSAVRDVAKAFGFSPGQQDAWSRQI----------------DRWGSVASVDAEDIPEQ 190

Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
           ++  + +L+   RH   H+ G+VI DRP+ ++ P+         V Q++       GL+K
Sbjct: 191 VVAYADQLQTFPRHLGIHSGGMVICDRPVIEVCPVEWGRMPGRSVLQWDKDDCAAVGLVK 250

Query: 571 FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
           FD LGL  L+ L    D +   G  +DL  +  DD E Y +L    ++G+FQ+ES     
Sbjct: 251 FDLLGLGMLSALHYGYDMI---GTTLDLGDMTLDDPEVYDMLCRADSVGVFQVESRAQMA 307

Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            L  ++P    D++  V+L RPGPI    V  Y  R+NG+E +   HPL+   L++T GV
Sbjct: 308 TLPRLKPREFYDLVVEVALIRPGPIQGGSVHPYIRRRNGQEPVTYPHPLMRNALEKTLGV 367

Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAV 747
            ++QEQ+MQ+A  L+G+  + AD LRRAMG K+  + M +  +R  +G ++ GI+  +A 
Sbjct: 368 PLFQEQLMQLAIDLAGFDAAGADQLRRAMGAKRSVQRMARVADRLYAGMAERGITGELAD 427

Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
           +++  L  FA YGF +SHA ++A + Y ++W+K ++P  FLAA +  +       +    
Sbjct: 428 DVYRKLTAFASYGFPESHAMSFAYLVYASSWLKRYHPGPFLAALLGAQPMGFYSPQTLVD 487

Query: 808 DARQFNIQIMPPSVNT 823
           DAR+  +++  P VN 
Sbjct: 488 DARRHGVEVRRPDVNA 503


>gi|114766756|ref|ZP_01445693.1| DNA polymerase III, alpha subunit, putative [Pelagibaca bermudensis
           HTCC2601]
 gi|114541013|gb|EAU44070.1| DNA polymerase III, alpha subunit, putative [Roseovarius sp.
           HTCC2601]
          Length = 1078

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 229/740 (30%), Positives = 349/740 (47%), Gaps = 40/740 (5%)

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRP 246
           R+ G D+       +LA     P+VA  + L       +  DVL  +    T+ +   R 
Sbjct: 167 RYDGSDQAWFDACAKLALRMNTPMVAVGDVLMHRAARRQLADVLTCLREGCTIDAIGTRA 226

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               +  LK  ++M  ++   P AL  T+EIA RC+F L   +   P       D+I   
Sbjct: 227 LPNAERRLKPATDMARLYRRHPAALRRTLEIAARCAFDLGELSYEYP-------DEIADG 279

Query: 307 E--ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
           E  +  L   A AGLE R  +GA  K +        +  EL V+  + F+ YFL V D +
Sbjct: 280 ETPQARLERLAHAGLERRYPEGAPDKVFDL------MAKELRVVEELGFAAYFLTVNDIV 333

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +A+   I +  GRGS A SV  Y L ITD+ P    ++FERF++  R   PD D+DF  
Sbjct: 334 AFARSRGI-LCQGRGSAANSVLCYLLGITDVSPDLIGMVFERFISRYRGEPPDIDVDFEH 392

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           +RR+EVI+++  KYG  R     T    + +AA+R+VG+ + +       L   I     
Sbjct: 393 ERREEVIQWIYEKYGRHRAGLCATVIHFRTRAAIREVGKVMGLSQDVTAALSGQIWGQS- 451

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLE---ISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                   AD  R RE  L DP   RL +   +  ++ G  RH S H  G +I    L +
Sbjct: 452 -----NGGADPGRIRELGL-DPGDRRLAQTIGLIGEIIGFPRHLSQHVGGFIITRGRLDE 505

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSL 600
           L P+         V +++   I+  G++K D L L  LT ++K+   L Q  G++  L  
Sbjct: 506 LCPIENAAMEGRTVIEWDKDDIDALGILKVDVLSLGMLTCIRKAFALLDQHEGLRHTLDT 565

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
           +P +D  TY +L     +G+FQ+ES      L  M+P    D++  V++ RPGPI   +V
Sbjct: 566 VPQEDEATYRMLQKADAVGVFQVESRAQMNFLPRMKPATFYDLVIEVAIVRPGPIQGGMV 625

Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             Y  R+ G E+     P +  + ++T GV ++QEQ MQIA + +GYS  EAD LRR++ 
Sbjct: 626 QPYIRRRQGLERPEPFGPALSEVTRKTLGVPLFQEQAMQIAVVGAGYSAEEADRLRRSLA 685

Query: 719 K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             +    + + ++RF  G  KNG ++  A   F  +  FADYGF +SHAAA+A+++Y ++
Sbjct: 686 SFRRMGTIGEHRDRFTRGMLKNGYTREAAERCFTQIEGFADYGFPESHAAAFAMLTYVSS 745

Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF---KVGDNR 834
           W+K H+P  F  A +  +        +  +D R   I++ P  VN    D    +  D R
Sbjct: 746 WLKCHHPAIFGCALLNSQPMGFYAPAQIVRDLRDHGIELRPICVNHSQWDNVLERRADGR 805

Query: 835 IYYSLA--AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
           +   L    IKG     A  I+ A  +  +   E    R     L   VLE L  A A  
Sbjct: 806 LALRLGFRQIKGFREEDAGWIVAARGNG-YPDPESLWLRAG---LLPGVLERLAEADAFA 861

Query: 893 CFGYSRMQLLQSLDNIQKYA 912
             G +R   L  +  I+  A
Sbjct: 862 GMGLTRRDALWQVRAIRSPA 881


>gi|309797648|ref|ZP_07692035.1| DNA polymerase III, alpha subunit [Escherichia coli MS 145-7]
 gi|308118745|gb|EFO56007.1| DNA polymerase III, alpha subunit [Escherichia coli MS 145-7]
          Length = 787

 Score =  301 bits (771), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 234/775 (30%), Positives = 384/775 (49%), Gaps = 73/775 (9%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           L V + +SL E AL   N + KIA +    A+   D+ N+ S +   Q+A    +  I G
Sbjct: 4   LMVRTDFSLGESALKAENAV-KIAREAGYTAVISADSMNIASVIPL-QRAAGDDMAVICG 61

Query: 73  CQLDI----DMQDNLKMTNQGKTPFPTVP-----SIVLLVSTAEGYQRLIELVSRMYLLD 123
            +L+I      +   K+  +      ++      S   L+   +GY+ + EL++     +
Sbjct: 62  VKLNIVDDPTYEHRAKLAKESMRCMESLERGRNYSFTALIKNEQGYRDICELMTVANTRE 121

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182
           Q     R+ L  L     +G I+L     G +     F  +  A K + T     G D  
Sbjct: 122 QFYFVPRLSLEQLVSTYAKGNIILLTSDIGSV-----FQRNDFA-KIISTLITAGGKDNF 175

Query: 183 YVNLQRHRG--YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
           Y  +  H    YD+    + +++A   ++  VA   + + S +D +  D+   V ++  +
Sbjct: 176 YSVVYPHPTPFYDQI-NVRAMKVASALKIEPVAFYPAYYESIDDADIKDIAHMVTNNIKI 234

Query: 241 SQKDRPRVTP--DHYLKNRSEMV------SIFSDLP--EALENTVE--IARRCSFILQVH 288
            Q  R R+    D+ +  R  ++      S+  D+P   A+ +T +  I   C++     
Sbjct: 235 DQPHRLRIPHQRDNAINGRRHLLEALKAFSVRMDVPVTAAMASTTQDSIIDACTWRWHEL 294

Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFEL 345
            P LP+  +        +E   L   AVAGL  RL     G        + Y +RL +E+
Sbjct: 295 PPALPKMAD--------DEPATLMKLAVAGLRKRLTTKEFGYTPPASENRVYVERLKYEM 346

Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
           + + R+ F GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFE
Sbjct: 347 DTLTRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFE 406

Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
           RF+NP+R+ +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R  
Sbjct: 407 RFINPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIY 466

Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQAIADDS-RFREARLADPSVDRL-------LEISQK 517
            +  +           D A    L+ + DDS    E R    S+D+           + K
Sbjct: 467 GVESA-----------DMAVSKELKNVEDDSLPLEELREQLASLDKYATKYPDAFNAACK 515

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
           L+ L R    HAAG+++   PL++  P+ R  R D     F+ ++ E  GLIK D LGL 
Sbjct: 516 LQSLMRGFGRHAAGMIVAGVPLTERTPVER--RGDARCIAFDKRYCEAMGLIKLDVLGLA 573

Query: 578 TLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE--- 633
           TL LL  +  ++ +  G  ++L  I  +D +         T G+FQLES  MR+ L+   
Sbjct: 574 TLDLLDSAKRYIKENTGEDINLDAISLEDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLG 633

Query: 634 -GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
            G++P   + ++A  +L+RPGPI + ++  Y +   G     S+HP++D + ++T GV+I
Sbjct: 634 GGIEPMSFKTVVATTALFRPGPIQSGMLDDYVSVAKGFMAPHSLHPMLDDISRDTNGVLI 693

Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
           YQEQ+M   ++L+G+S++EAD +R+A+GKK  E+M      FI  A +  ++ ++
Sbjct: 694 YQEQIMAATRILAGFSMAEADSVRKAIGKKDMEKMKSIGGDFIKRAEEGWVTVSL 748


>gi|323934241|gb|EGB30665.1| bacterial DNA polymerase III alpha [Escherichia coli E1520]
          Length = 787

 Score =  301 bits (771), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 234/775 (30%), Positives = 384/775 (49%), Gaps = 73/775 (9%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           L V + +SL E AL   N + KIA +    A+   D+ N+ S +   Q+A    +  I G
Sbjct: 4   LMVRTDFSLGESALKAENAV-KIAREAGYTAVISADSMNIASVIPL-QRAAGDDMAVICG 61

Query: 73  CQLDI----DMQDNLKMTNQGKTPFPTVP-----SIVLLVSTAEGYQRLIELVSRMYLLD 123
            +L+I      +   K+  +      ++      S   L+   +GY+ + EL++     +
Sbjct: 62  VKLNIVDDPTYEHRAKLAKESMRCMESLERGRNYSFTALIKNEQGYRDICELMTVANTRE 121

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182
           Q     R+ L  L     +G I+L     G +     F  +  A K + T     G D  
Sbjct: 122 QFYFVPRLSLEQLVSTYAKGNIILLTSDIGSV-----FQRNDFA-KIISTLITAGGKDNF 175

Query: 183 YVNLQRHRG--YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
           Y  +  H    YD+    + +++A   ++  VA   + + S +D +  D+   V ++  +
Sbjct: 176 YSVVYPHPTPFYDQI-NVRAMKVASALKIEPVAFYPAYYESIDDADIKDIAHMVTNNIKI 234

Query: 241 SQKDRPRVTP--DHYLKNRSEMV------SIFSDLP--EALENTVE--IARRCSFILQVH 288
            Q  R R+    D+ +  R  ++      S+  D+P   A+ +T +  I   C++     
Sbjct: 235 DQPHRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIDACTWRWHEL 294

Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFEL 345
            P LP+  +        +E   L   AVAGL  RL     G        + Y +RL +E+
Sbjct: 295 PPALPKMAD--------DEPATLMKLAVAGLRKRLTTKEFGYTPPASENRVYVERLKYEM 346

Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
           + + R+ F GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFE
Sbjct: 347 DTLTRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFE 406

Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
           RF+NP+R+ +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R  
Sbjct: 407 RFINPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIY 466

Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQAIADDS-RFREARLADPSVDRL-------LEISQK 517
            +  +           D A    L+ + DDS    E R    S+D+           + K
Sbjct: 467 GVESA-----------DMAVSKELKNVEDDSLPLEELREQLASLDKYATKYPDAFNAACK 515

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
           L+ L R    HAAG+++   PL++  P+ R  R D     F+ ++ E  GLIK D LGL 
Sbjct: 516 LQSLMRGFGRHAAGMIVAGVPLTERTPVER--RGDARCIAFDKRYCEAMGLIKLDVLGLA 573

Query: 578 TLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE--- 633
           TL LL  +  ++ +  G  ++L  I  +D +         T G+FQLES  MR+ L+   
Sbjct: 574 TLDLLDSAKRYIKENTGEDINLDAISLEDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLG 633

Query: 634 -GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
            G++P   + ++A  +L+RPGPI + ++  Y +   G     S+HP++D + ++T GV+I
Sbjct: 634 GGIEPMSFKTVVATTALFRPGPIQSGMLDDYVSVAKGFMAPHSLHPMLDDISRDTNGVLI 693

Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
           YQEQ+M   ++L+G+S++EAD +R+A+GKK  E+M      FI  A +  ++ ++
Sbjct: 694 YQEQIMAATRILAGFSMAEADSVRKAIGKKDMEKMKSIGGDFIKRAEEGWVTVSL 748


>gi|89054049|ref|YP_509500.1| DNA polymerase III, alpha subunit [Jannaschia sp. CCS1]
 gi|88863598|gb|ABD54475.1| error-prone DNA polymerase, DnaE-like protein [Jannaschia sp. CCS1]
          Length = 1097

 Score =  301 bits (771), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 273/1034 (26%), Positives = 458/1034 (44%), Gaps = 96/1034 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V L + + +S L GA    ++           +   D N +   +    +A  A I P+
Sbjct: 23   YVELGLTTCFSFLHGASDAVDLATTAHGLGYDKLGCADLNTMAGVVRLHAEALKAQITPV 82

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR--MYLLDQGKQS 128
            IGC+L +       +T +    +P              Y RL  L+S+  M  +D   Q+
Sbjct: 83   IGCRLRL-------VTGEDFLAYP---------RDRAAYGRLCTLLSKGKMTDVDGAWQA 126

Query: 129  VRICLSWLQEIGTEG----LIMLTGGSSGPIDRAFFFNSSQVAEKRLL----TFKKLFGD 180
               C   L ++        LI L G      +  F         KRL+    T + +   
Sbjct: 127  KGACDITLDDLAGHSKDVQLIALPGPRLDHFEAGF---------KRLIRALPTLRHIAVS 177

Query: 181  RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             LY       G DR R +++ +LA  H L ++ATN+  + + +     DV+  + H T +
Sbjct: 178  YLY------EGDDRARINRLDRLAQAHGLGIMATNDVRYHAPDRRPLQDVMTCILHKTTI 231

Query: 241  SQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +         + +LK+ ++M+ +F+  P A+  T  IA  C+F L+  A   P+    E
Sbjct: 232  QKAGFLLNANAERHLKSPAQMIQLFAQWPHAIRATRAIADACTFDLRELAYEYPKETVPE 291

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                Q   E EL  K  A         AI+           L  EL +I +M    YFL 
Sbjct: 292  GRTPQGYLE-ELTWKGAARRYPDGIPDAIST---------TLRKELALIKKMDIPQYFLT 341

Query: 360  VADFIQWAKKNNIP--VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            +   + +A+    P  +  GRGS A S   Y L IT +DP    LLFERF++ +R   PD
Sbjct: 342  IEQIVDYARHKCDPPILCQGRGSAANSAVCYVLGITAVDPNTNDLLFERFISEERKEPPD 401

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  +RR+EVI+++ N+YG +R A   T    + + A+R+VG+ + +       L K
Sbjct: 402  IDVDFEHERREEVIQHIYNRYGRDRAALCATVIHYRPRMAVREVGKVMGLSEDITSALAK 461

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
             I       V  +  A+        L DP + R ++++ ++ G+ RH   H  G ++ ++
Sbjct: 462  TIWGSWGREVGAREAAEAG----IDLKDPLMARTIKLADQMIGMPRHLGQHVGGFILTEK 517

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKV 596
             L++ VP+     +D    +++   I++  ++K D L L  LT ++K+ D + A  G  +
Sbjct: 518  KLNETVPIGNGAMADRTFIEWDKDDIDELRILKVDILALGMLTCIRKAFDLIKAHYGRTL 577

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI- 655
             L+ I   D  TY +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI 
Sbjct: 578  TLASIEQGDRATYDMLCKGDSLGVFQVESRAQMNMLPRLKPREFYDLVIQVAIVRPGPIQ 637

Query: 656  -DNIVVYNNRKNGK--EKIVSIHPLIDP-----MLKETQGVIIYQEQVMQIAQLLSGYSL 707
             D +  Y  R+ GK  E   S  P  DP     +L  T+GV I+QEQ M++A + + +S 
Sbjct: 638  GDMVHPYLRRRAGKEPEDYPSPKPPHDPEELRKVLSRTKGVPIFQEQAMKLAMVAAEFSP 697

Query: 708  SEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             EA+ LR+AM   + K  + + +E+ +S     G     A   F  +  F DYGF +SHA
Sbjct: 698  DEANQLRKAMATFRSKGTIGELEEKMVSRMINRGYDPEFAHRCFNQIKGFGDYGFPESHA 757

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A++A + Y ++W+K HYP  F AA +  +        +  +DAR+  + +    VN    
Sbjct: 758  ASFAHLVYISSWIKCHYPDVFCAALLNSQPMGFYAPAQIVRDAREHGVIVRAADVNYSGW 817

Query: 827  DFK---VGDNRIYYSLA--AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
            D     VG  +    L    I G+    A  I+ A    PF  L D   R  +   +   
Sbjct: 818  DTTLEPVGQGQFAVRLGQRQIDGMRQDVADRIVTAR-HTPFTDLIDLRQRAQTDAGS--- 873

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEKGTFSD-KIT 939
            L  L  A A+      R Q L           W  +   +  +  +FA +K    + +  
Sbjct: 874  LRKLAAADAMRSMMLDRRQAL-----------WETRALHDAQDLPLFAEQKDEGDEIRFD 922

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLA 998
            L +  +    V      R+       HP+   +  + + G   +  ++A +R G +++LA
Sbjct: 923  LPEMPICEHVVADYQTTRL---SLKAHPMSFLRKSMERQGYH-HTGALAHMRNGQSVKLA 978

Query: 999  AMVVSKQQKKTRKG 1012
             +V+ +Q+  + KG
Sbjct: 979  GIVLIRQRPGSAKG 992


>gi|119774998|ref|YP_927738.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119767498|gb|ABM00069.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 1030

 Score =  301 bits (770), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 233/831 (28%), Positives = 399/831 (48%), Gaps = 71/831 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L   S+YS L GA   + ++ + A     AIAITD  ++   ++    A  AGI  I
Sbjct: 2   YAELHAISNYSFLRGASHPHELVAEAARLGYSAIAITDECSVAGVVKAHMAAVDAGISLI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G +  +          QG        + VLL ++  GY  L  L+SR       K   R
Sbjct: 62  VGSEFRL---------QQG--------TFVLLATSRAGYGALCRLISRGRR-RAPKGEYR 103

Query: 131 ICLSWLQEIGTEGLIML-------TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
           I L  L     + +++         G      ++ +F    Q+A K+L  ++   G R  
Sbjct: 104 INLDDLLSPLPDCVLLWRPPMPQNPGTDIAATEQHWFATQKQLA-KQLTPWQ---GRRYL 159

Query: 184 VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
           +  Q         +  +++L+   ++P VA  +    S       DVL  +     + + 
Sbjct: 160 LAEQCLEAAGSLWQRYLMRLSGLCDIPCVAAGDVRMHSAARQPLLDVLTCIRLGLRLDEA 219

Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLP-EALENTVEIARRCSFIL-----QVHAPILPRFI 296
           +       +HYL+    + SI    P E + NT +IA +C F +     +  A ++P   
Sbjct: 220 EGHLCQNAEHYLR---PLGSIHRRYPQEWIANTQKIASQCRFSMAELRYEYPAELVPAGF 276

Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
               + + +E     R +   GL V     A+ + Y A         EL +I  +++  +
Sbjct: 277 SAS-EYLAREVAKGARRRY--GLAV---PAAVKRQYLA---------ELKLIHELEYEYF 321

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
           FL + D +++A++  I +  GRGS A SV  + L IT++DP R ++LFERF++ +R   P
Sbjct: 322 FLTIYDIVRFARRKRI-LHQGRGSAANSVVCFCLGITEVDPTRVNMLFERFISKERHEPP 380

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           D D+DF  +RR+EVI+Y+  KYG  R A   +  + + K+A+ +VG+ L +    V RL 
Sbjct: 381 DIDVDFEHERREEVIQYIYRKYGRHRAALAASVITYRLKSAMGEVGKVLGLDRELVARLI 440

Query: 477 KLIPN-DPAHPVSLQAIADDSRFREARLAD-PSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           + I   DP+HP           +RE   A  PS D    + Q L G  RH S H  G VI
Sbjct: 441 QGIDRRDPSHP-----------WREQLAAQLPSADMFGYLVQSLLGFPRHLSQHVGGFVI 489

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
              PL++LVP+      D  V Q++   +E  GL+K D L L  LT ++K  + +++   
Sbjct: 490 SAGPLAELVPVENAAMEDRTVIQWDKDDLEALGLLKVDVLALGMLTAIRKCFELISRHQQ 549

Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              +  I  +D   Y +L+   ++G+FQ+ES      L  ++P C  D++  +++ RPGP
Sbjct: 550 PFGMRSIKAEDPNVYRMLSRGDSMGVFQVESRAQTSMLPRLRPACYYDLVIQIAIVRPGP 609

Query: 655 IDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           I   +V+    R+ G E +      +  +L+ T GV I+QEQV+++A + +G+S  EAD 
Sbjct: 610 IQGDMVHPFLRRRKGLEAVTYPSEAVKAVLERTMGVPIFQEQVIKLAMVAAGFSGGEADA 669

Query: 713 LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           LRRAM   K   ++   +++ + G +  G S+  A  IF  +  F +YGF +SH+A++A+
Sbjct: 670 LRRAMASWKHTGKLWSFEQKLLDGMAARGYSEDFARQIFRQIQGFGEYGFPESHSASFAL 729

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           ++Y +A++K ++P  F  A +  +        +  QD R+  +++    +N
Sbjct: 730 LAYVSAYLKLYHPAAFCCALLNSQPMGFYSPSQLLQDVRRHGVEVFDVCIN 780


>gi|302561461|ref|ZP_07313803.1| DNA polymerase III, alpha subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302479079|gb|EFL42172.1| DNA polymerase III, alpha subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 775

 Score =  301 bits (770), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 191/616 (31%), Positives = 311/616 (50%), Gaps = 25/616 (4%)

Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQ-DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           R  A   L  R A G +  GY  + +Y +R+  EL++IA   F+ YFL V+  +   +  
Sbjct: 71  RRTAQRALASRAAAGMVLHGYAGRREYWERMHRELDIIAHHGFASYFLTVSQVVDDVRHM 130

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            I V   RGSGAGS+  + L I   DP+   LL ERFL+ +R+ +PD DID    RR EV
Sbjct: 131 GIRVA-ARGSGAGSLVNHLLGIAHADPVEHGLLMERFLSKERVVLPDIDIDVESARRLEV 189

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            R +  ++G ERVA +    + + + A+RDVG AL M   ++DR+ K  P+  A      
Sbjct: 190 YRAIIGRFGAERVAAVAMPETYRVRHAVRDVGAALSMDPDEIDRIAKSFPHIRARDAR-A 248

Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
           A+ +    R          RL E+ + L+ L R  + H  G+++ D  L    P+     
Sbjct: 249 ALEELPELRRLAGEKEKYGRLWELVEALDALPRGIAMHPCGVLLSDASLLTRTPVMPTSG 308

Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
              P+ QF+   +E  GL+K D LG++  + +  ++  + +  G ++DL  +P  D  TY
Sbjct: 309 EGFPMAQFDKDDVEDLGLLKLDVLGVRMQSAMAHAVTEVERATGERIDLDAVPEGDPATY 368

Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNG 667
            L+ +  TLG FQ+ES G R  +  +QP    D++  +SL+RPGP+  D +  +   ++G
Sbjct: 369 GLIRSTETLGCFQIESPGQRDLVGRLQPSTFHDLVVDISLFRPGPVAADMVRPFIEARHG 428

Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
           +  +   HP ++  LK T GV+++ EQV+ I  +++G    EAD +RR +     E   +
Sbjct: 429 RAPVRYPHPDLEESLKGTYGVVVFHEQVIDIVSVMTGCGRGEADRVRRGLSD--PESQGR 486

Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            K  F   A+  G         +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F
Sbjct: 487 IKVWFAQHAAARGYDAETIQRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAF 546

Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK---VGDNR-------IYY 837
            A  +T +     K +    DAR+  + ++P  VN   V  +   V +++       +  
Sbjct: 547 YAGLLTHDPGMYPK-RLLLADARRRGVPVLPLDVNKSGVAHRIELVSESKESKEVWGLRL 605

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           +L+ + G+    A  I   +  +P+ SL DF  R    + +R +   L   GALD FG +
Sbjct: 606 ALSDVHGISEAEAARI---AGGQPYASLLDFWERA---RPSRPLAGRLAQVGALDAFGAN 659

Query: 898 RMQLLQSLDNIQKYAQ 913
           R  +   L  + + A+
Sbjct: 660 RRDMQLHLTELHRGAR 675


>gi|167717945|ref|ZP_02401181.1| error-prone DNA polymerase [Burkholderia pseudomallei DM98]
          Length = 716

 Score =  301 bits (770), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 215/691 (31%), Positives = 336/691 (48%), Gaps = 72/691 (10%)

Query: 164 SQVAEKRLLTFKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
           + V + +L  F  LFG+R  + L Q  R  D     QV        + +VA  +      
Sbjct: 27  ADVLDAQLAWFDALFGERARLGLVQLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIR 86

Query: 223 EDYEAHDVLMAVAHSTVVSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARR 280
                 D + A+     +++     + P  + +L+ R  +  +F    +AL  T  +   
Sbjct: 87  SCKPLQDTMTAIRLGMPIAECGHA-LAPNGEQHLRTRQRIAQLFPA--DALAQTCRMLDA 143

Query: 281 CSFILQVHAPILPRFIEKECDDIQKEEENE-----------LRNKAVAGLEVRLAQGAIA 329
           C F L               DD++ E  +E           L  +  AG   R   G   
Sbjct: 144 CHFSL---------------DDLRYEYPHEIVPAGHTPTSYLAQETWAGARRRYPDGV-- 186

Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                   RQR++FEL +IA +K+  YFL V D +++A+  +I +  GRGS A SV  Y 
Sbjct: 187 ----PDTVRQRIEFELALIADLKYEPYFLTVYDIVKYARSKDI-LCQGRGSAANSVVCYC 241

Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
           + +T+++P + +LLFERFL+ +R   PD D+DF   RR+EVI+Y+  KYGH+R A     
Sbjct: 242 IGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQRREEVIQYLYEKYGHDRAALAAAV 301

Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA----D 505
            + + + ALR+ G+AL +    V+R+ K                D SR   AR A    D
Sbjct: 302 STYRPRGALRETGKALGVDPMLVERVAK-----------EHRWFDGSRDLLARFASVGLD 350

Query: 506 PSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
           P V  +    EI+ +L    RH S H+ G V+    L++LVP+         V Q++   
Sbjct: 351 PEVPLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDD 410

Query: 563 IEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD------LSLIPFDDHETYHLLTTK 615
           +E  GL+K D L L  L+ L ++ D + A RG  +       L  IP DD  TY ++   
Sbjct: 411 LEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLEHIPQDDEATYDMICRA 470

Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRK-----NGK 668
            T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    V  Y  R+        
Sbjct: 471 DTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEAH 530

Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDK 727
            +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD LRRAM   K K ++ K
Sbjct: 531 GEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGK 590

Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A ++Y ++W+K H P  F
Sbjct: 591 YHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAKLAYASSWLKRHEPAIF 650

Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           LAA +  +        +  QDA++  + ++P
Sbjct: 651 LAALLNSQPMGFYPPAQLVQDAKRHGVTVLP 681


>gi|89069703|ref|ZP_01157040.1| DNA polymerase III subunit alpha [Oceanicola granulosus HTCC2516]
 gi|89044783|gb|EAR50889.1| DNA polymerase III subunit alpha [Oceanicola granulosus HTCC2516]
          Length = 1110

 Score =  301 bits (770), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 248/917 (27%), Positives = 429/917 (46%), Gaps = 70/917 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV L + + +S L GA    N   +       AI + D N     +    +A    ++P+
Sbjct: 27  FVELGLATCFSFLRGASDATNFALEAHRQGYDAIGVADLNTFAGVVRLHIEAKVTRLRPV 86

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR--MYLLDQGKQS 128
           IGC+L +       ++ +    +P              Y RL  L+S+  M+  +   Q 
Sbjct: 87  IGCRLAL-------LSGEVFLAYP---------RDRAAYGRLSRLLSKGKMHDSEGNWQK 130

Query: 129 VRICLSWLQEIGT--EG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +C   L ++    EG  LI++       ++RA     +     RL T   +    LY 
Sbjct: 131 KGVCDLTLADLAAHAEGVQLILVPPEDLDALERALPGLLT-----RLPTLGHIAASHLY- 184

Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                RG DR R +++  LA  H L ++ATN+ L+         DV+  +     +++  
Sbjct: 185 -----RGDDRARINRLDALAVRHGLQILATNDVLYHERARRPLQDVMSCIREGVTLAEAG 239

Query: 245 -RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R     + +LK+ +EM  +F++ P A+     +A  C F L+  A   PR    E    
Sbjct: 240 FRLEQNAERHLKSPAEMARLFNEWPHAIAAARAVADSCRFDLEELAYEYPR----EMIPT 295

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
           +   +  L     AG   R   G I +   A      L+ EL +I ++  + YFL + D 
Sbjct: 296 ETTPQAWLEELTWAGAAERYPDG-IPEATVAV-----LNKELAMIEKLDIARYFLTINDI 349

Query: 364 IQWAKKNNI-PV-GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           +++A++    P+   GRGS A S   Y L IT +DP +  LLFERF++ +R   PD D+D
Sbjct: 350 VRFAREGVAKPILCQGRGSAANSAVCYVLGITAVDPAQHQLLFERFISEERKEPPDIDVD 409

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           F  +RR+EVI+++  KYG +R     T    + ++A+R+VG+ + +       L K I  
Sbjct: 410 FEHERREEVIQHIYQKYGRDRAGLCATVIHYRPRSAIREVGKVMGLSEDVTGALAKTIWG 469

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                V  + + +        L+DP + + + ++++L G+ RH S H  G ++ +RPL++
Sbjct: 470 SWGTDVEARHVGEAG----LELSDPVLRKTILLARQLIGMPRHLSQHVGGFILTERPLTE 525

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600
            VP+      D    +++   I+  G++K D L L  LT ++K  D + A  G    L+ 
Sbjct: 526 TVPIGNGAMPDRSFIEWDKDDIDALGILKVDILALGMLTCIRKCFDLIEAHYGQSWTLAS 585

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
           IP +D   Y +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 586 IPQEDSRVYDMLCKGDSIGVFQVESRAQMNMLPRLRPREFYDLVIEVAIVRPGPIQGDMV 645

Query: 659 VVYNNRKNGKEKI--VSIHPLIDP-----MLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
             Y  R++G+E +   +  P  DP     +L  T GV I+QEQ M+IA   + +S +EA+
Sbjct: 646 HPYLRRRSGEEAVDYPAPAPPHDPQELKNILGRTLGVPIFQEQAMKIAIDAARFSPAEAN 705

Query: 712 VLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            LR+AM   + K ++   +++ +    + G  +  A   F+ +  F +YGF +SHAA++A
Sbjct: 706 ELRKAMATFRSKGQIGLLEDKMVGRMVERGYEEDFARRCFDQIKGFGEYGFPESHAASFA 765

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
           ++ Y ++W+K H+P  F AA +  +        +  +DA++  +++  P VN    D  +
Sbjct: 766 LLVYVSSWLKCHFPDAFCAALLNSQPMGFYAPAQIVRDAQEHGVEVRAPDVNYSEWDNSL 825

Query: 831 -----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                G   +   L  I G+    A  ++ A+ D P+  L+    R     L + V+  L
Sbjct: 826 EPTYAGYFAVRLGLRQIGGLREDMAARLV-AARDAPYRDLKQLQERAG---LTQPVIRRL 881

Query: 886 VFAGALDCFGYSRMQLL 902
             A A+      R Q L
Sbjct: 882 AEADAMRSMFIDRRQAL 898


>gi|86148598|ref|ZP_01066882.1| putative DNA polymerase III alpha chain [Vibrio sp. MED222]
 gi|85833627|gb|EAQ51801.1| putative DNA polymerase III alpha chain [Vibrio sp. MED222]
          Length = 1030

 Score =  301 bits (770), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 239/853 (28%), Positives = 404/853 (47%), Gaps = 63/853 (7%)

Query: 181  RLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            RL++ LQRH +  D+      V+L+  H+LP+ A    L  +         L A+ +   
Sbjct: 147  RLWIGLQRHLKQTDQQYTDYCVELSQHHQLPITACGGVLMHNANRLPLQHSLTAIKYQQP 206

Query: 240  VSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-----QVHAPILP 293
            +++  +      +  L++ +++  IF    E LE +  IA  C F L     +  + ++P
Sbjct: 207  ITEVGNHLLANAERCLRSINKISHIFK--AEWLEESNRIAELCEFDLDSLRYEYPSELIP 264

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            +          +   + LR     G   R  QG         D +Q +D EL +I  + +
Sbjct: 265  Q---------GETPMSYLRMLVEKGKRARFPQGV------PNDIQQIIDKELRLIDALDY 309

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              +FL + D + +AK   I +  GRGS A SV  Y L IT +DP + S+LFERF++ +R 
Sbjct: 310  PFFFLTIHDIVIFAKSQGI-LYQGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERD 368

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D+DF  +RR+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  +Q+D
Sbjct: 369  EPPDIDVDFEHERREEVIQYIYKKYGRERAALAATVISYRFKSAVRDVGKALGLQETQLD 428

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
               K   N     +  QA       +   L      + + +  ++ G  RH S H  G V
Sbjct: 429  YFIKNT-NRRDKSLGWQAQLTQLGLQPDSLKG---QQFIHLVNEIIGFPRHLSQHVGGFV 484

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
            I   PL +LVP+      D  + Q++   +E  GL+K D L L  L+ ++K  D + +  
Sbjct: 485  ISSGPLYELVPVENAAMHDRTIIQWDKDDLETLGLLKVDVLALGMLSAIRKCFDLIKRIH 544

Query: 593  GVKVDLSLIPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            G  + ++ I    DD + Y ++    T+GIFQ+ES      L  ++P    D++  +++ 
Sbjct: 545  GRSLTIAEITRLKDDPQVYGMIQRADTVGIFQIESRAQMSMLPRLKPRTYYDLVIQIAIV 604

Query: 651  RPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGPI   +V+    R++G E I      ++ +L  T GV I+QEQV+++A + +G++  
Sbjct: 605  RPGPIQGDMVHPFLKRRDGIEPISYPSKDVESVLSRTLGVPIFQEQVIKLAMVAAGFTGG 664

Query: 709  EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EAD LRRAM   K    + K K + I G  K G     A  IF+ +  F +YGF +SH+A
Sbjct: 665  EADQLRRAMAAWKKNGNVFKFKNKLIEGMQKRGYETEFAEQIFKQICGFGEYGFPESHSA 724

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++AV++Y +AW+K +YP  F  + +  +        +  QDA++ N+ ++P  VN    +
Sbjct: 725  SFAVLAYCSAWLKCYYPECFYTSLLNSQPMGFYSPSQLVQDAQRHNVVVLPVCVNASQDN 784

Query: 828  FKVGDNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
              V  ++    I   L  IKG      + ++   A++P  S     S+V    +N++ +E
Sbjct: 785  HTVIAHQNGLAIRLGLRQIKGFSEHGIQSVL---ANRP-QSGYRHPSQVKQLSMNKKDIE 840

Query: 884  SLVFAGALDCFGYSRMQ----LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
             L  A AL      R Q    ++ S  ++  ++Q V  +  + H+    H+     D   
Sbjct: 841  LLASANALHNVSGDRFQTRWAIMDSASDLPLFSQ-VYDDVGDGHDEHALHKPNEMQD--L 897

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
            LE F+              +G   + HP+ + +   R       ++ +     + + +  
Sbjct: 898  LEDFT-------------SVGISLNKHPITLLEEAGRLGRFTHMKDLIQQRHKSMVTVVG 944

Query: 1000 MVVSKQQKKTRKG 1012
            +V  KQ   T  G
Sbjct: 945  LVTGKQAPGTAAG 957


>gi|300693740|ref|YP_003749713.1| DNA polymerase iii, alpha subunit [Ralstonia solanacearum PSI07]
 gi|299075777|emb|CBJ35082.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum PSI07]
          Length = 1075

 Score =  300 bits (769), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 285/1049 (27%), Positives = 462/1049 (44%), Gaps = 101/1049 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA   + ++++  A    A+A+TD  ++   +     A  AG+ 
Sbjct: 12   PDYAELHCISNFTFLTGASHPHELVERAKALGYQALALTDECSVAGTVRAHMAAKEAGLT 71

Query: 69   PIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             IIG +  + D Q    +             +VLL    +GY  L E +++  L    K 
Sbjct: 72   LIIGSRFTVRDAQGEPWL------------RLVLLAQDIDGYGNLCECITQARLAAP-KG 118

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT----FKKLFGDRLY 183
              R+    L      GL  L G    P   A          + LL      +++FGDRL 
Sbjct: 119  DYRLLADDLAAPAG-GLAHLRGM---PQCLAILLPDYDPDPRHLLAQAQWCRQVFGDRLS 174

Query: 184  VNLQ---RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            + L+   RH   DR+R + V  ++   ++P+VAT +    S +    HDVL A+  S  +
Sbjct: 175  MALELPLRH-ADDRHRGT-VSAVSDQTDVPMVATGDVAMHSRQRKPLHDVLTAIRLSRPI 232

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPE----ALENTVEIARRCSFILQVHAPILPRFI 296
            ++     + P      R+ M   F    E     L  +VE+A  C F L       P  +
Sbjct: 233  AECGL-ELAPSAEQAMRTRMQLAFFYQGERGAKVLRRSVELASLCDFSLDEVEYAYPHEV 291

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E     +     L  + +AG E R  +   AK       + ++  EL +IA +++  +
Sbjct: 292  VPE----GQTPAGYLHAEVMAGAERRYGKDVPAK------VQAQIVEELALIAELRYEPF 341

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D +++A+   I +  GRGS A S   Y L IT+++P   + LF RFL+  R   P
Sbjct: 342  FLTVYDVVRFARSQGI-LCQGRGSAANSAVCYCLGITEVNPESGNTLFARFLSRARNEPP 400

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF   RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL +    ++++ 
Sbjct: 401  DIDVDFEHQRREEVIQYIYKKYGLTRTALAAALITYRTRSALRDVGRALGIDLGVIEQVA 460

Query: 477  KLIP-----NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            K        ++ A     Q +  +S         P V R   +  +L G  RH S H  G
Sbjct: 461  KAQAWWDGKHEFAQRAGQQGLDPES---------PLVQRWAGLIGQLRGFPRHLSQHVGG 511

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-- 589
             VI    LS+LVP+      +  V Q++   +E   L+K D L L  LT ++++LD L  
Sbjct: 512  FVIAQGKLSRLVPIENAAMPERRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMLDA 571

Query: 590  -----AQRGV--KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
                 A  G   K+ +  +P +D +TY +++   T+G+FQ+ES   +  L  ++P    D
Sbjct: 572  LPGRRAHYGAPDKLAMQHLPDEDPDTYDMISRAETIGVFQIESRAQQSMLPRLRPRTYYD 631

Query: 643  IIALVSLYRPGPIDNIVV--YNNR----KNGKEKIVSI-HPLIDPMLKETQGVIIYQEQV 695
            ++  V++ RPGPI   +V  Y  R    +NG    V+   P +  +L+ T GV I+QEQV
Sbjct: 632  LVIQVAIVRPGPIQGGMVHPYLQRREAVRNGNPDCVTYPGPEVKAVLERTLGVPIFQEQV 691

Query: 696  MQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASK-NGISKTIAVNIFELL 753
            M+IA    G++  EAD LRR M   K K  + + + R +    +           +   +
Sbjct: 692  MEIAMKAGGFTADEADRLRRDMAAWKRKGNLTQHQARLMKEMVEVRHYDPAFVEALCRQM 751

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA+YGF +SHAA +A ++Y ++++K H P  F AA +  +        +  Q+AR+  
Sbjct: 752  EGFAEYGFPESHAAGFARLAYVSSYLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSR 811

Query: 814  IQIMPPSVNTPCVDFKV--------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
            ++++P  V     D  +        G   I   L+ I+G+    A  I+   A  PF S+
Sbjct: 812  VRVLPADVTASAWDSTLHARPDGEGGQPDIRLGLSRIRGMRPPAAERIVATRAQAPFSSV 871

Query: 866  EDFCSRVDSKKLNRR-VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            ED   R     L+R  +         L   G+ R  L Q+L  +Q+  Q          +
Sbjct: 872  EDLAHRA---ALDRHDLSVLAAANALLSLAGHRRQALWQTL-ALQEPGQ----------D 917

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            +            + L   S+    V    +   LG     HPL + +P L +M      
Sbjct: 918  HALLRGARPVEAPLVLPAPSLGEEVV---ADYGSLGLSLQSHPLSLLRPRLERMRFVTAA 974

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
                   G   R   +V  +Q+  T KG+
Sbjct: 975  TLAGYRNGQLARACGIVTVRQRPGTAKGT 1003


>gi|260574122|ref|ZP_05842127.1| DNA polymerase III, alpha subunit [Rhodobacter sp. SW2]
 gi|259023588|gb|EEW26879.1| DNA polymerase III, alpha subunit [Rhodobacter sp. SW2]
          Length = 929

 Score =  300 bits (769), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 215/702 (30%), Positives = 347/702 (49%), Gaps = 42/702 (5%)

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           R+ G D  R +++  +A    +P VA+   +       +  DVL A+     V Q  R R
Sbjct: 158 RYDGQDAARFARLEGVAARLGIPTVASALPMMHHGARRKLADVLAAIRLGCRVEQLGR-R 216

Query: 248 VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             P  +  L++  EM+ +F+    A+  + EIA R  F L               D ++ 
Sbjct: 217 ALPHAEQRLRSEPEMLRLFAGFEAAVARSAEIAARLEFSL---------------DMLRY 261

Query: 306 EEENEL-RNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYFLIVA 361
           E  +E+   +  AG   RLAQ  +   Y A      + +L  EL +I+++ +  YFL V 
Sbjct: 262 EYPSEITEGETAAGRLARLAQAGLHWRYPAGIPAKPQAQLAHELALISKLHYEPYFLTVH 321

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D + +A+   I +  GRGS A SV  YAL +T + P   +++FERF++  R   PD D+D
Sbjct: 322 DIVAFARGRGI-LCQGRGSAANSVVCYALGVTSVSPEIGTMVFERFVSEARDEPPDIDVD 380

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           F  +RR+EVI+++  +YG  R     T    + K A+R+VGRA+ +    +  +   I  
Sbjct: 381 FEHERREEVIQHIYARYGRHRAGLCATVIHYRGKRAVREVGRAMGLSEDTLAAMSSQIWG 440

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRP 538
                +      +D+R RE  L DP+  RL   L + ++++G  RH S H  G +I +  
Sbjct: 441 WGGKGI------NDARLREIGL-DPADKRLAQTLALVEEIQGFPRHLSQHVGGFIITEGR 493

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
           L +LVP+      D  V  ++   I+  G++K D L L  L+ ++K+ D L +    +  
Sbjct: 494 LDELVPIENATMDDRTVICWDKDDIDALGILKVDILALGMLSCIRKAFDLLEKHHHTRYS 553

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
           L+ +P +D  TY +L    +LG+FQ+ES      L  M+P    D++  V++ RPGPI  
Sbjct: 554 LATLPAEDAATYDMLCRADSLGVFQVESRAQMNFLPRMRPRKFYDLVIQVAIIRPGPIQG 613

Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
           D +  Y  R+NG+E +      +  +L +T GV ++QEQ MQIA + +G+S  EAD LRR
Sbjct: 614 DMVHPYLRRRNGQEVVTFPSDELGRVLGKTLGVPLFQEQAMQIAIIGAGFSPLEADRLRR 673

Query: 716 AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           A+   K    +   KERF+ G + NG  +  +   F  +  F  YGF +SHAA++A + Y
Sbjct: 674 ALATFKKHGNVTALKERFLQGMAANGYEEDFSNRCFSQIEGFGSYGFPESHAASFAFLVY 733

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF---KVG 831
            +AW+K H+P  F  A +  +        +  +DAR   ++++PP +N    D      G
Sbjct: 734 ASAWIKHHHPGIFACALLNSQPMGFYAPAQIVRDARAHGVRVLPPCINASHWDNVMEACG 793

Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
           D   +      IKGV    A  I+ A  +  + + ED   R 
Sbjct: 794 DQLALRLGFRQIKGVAEDEALWIVAARGNG-YTAPEDVWRRA 834


>gi|13473732|ref|NP_105300.1| DNA polymerase III alpha chain [Mesorhizobium loti MAFF303099]
 gi|71151836|sp|Q98E34|DNAE2_RHILO RecName: Full=Error-prone DNA polymerase
 gi|14024483|dbj|BAB51086.1| DNA polymerase III alpha chain [Mesorhizobium loti MAFF303099]
          Length = 1118

 Score =  300 bits (768), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 268/1042 (25%), Positives = 452/1042 (43%), Gaps = 106/1042 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +    + S++S L GA     ++         AI + D N +   +   Q+A    +   
Sbjct: 9    YAEFGIQSNFSFLRGASKPEELVVAAKLMGFSAIGLADRNTVAGVVRAWQQAKVEKLAYH 68

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             GC+L         +   G       P I+       G+  L  ++++  L D+ ++   
Sbjct: 69   PGCRL---------VFGDG------TPDILAYPRNRAGWGHLCRMLTQANLRDETEKGAT 113

Query: 131  IC-----LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            +      L W   +    L  L  G+   +               L   K  FG  L + 
Sbjct: 114  LLQRDDLLEWGDLMSLAVLPDLAAGAEDSL-------------ALLGQIKDRFGRALRLG 160

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +   + GYDR+R  Q   LA    +PL+ATN+ L+ + E     DVL A+  +T V++  
Sbjct: 161  VSPCYAGYDRFRIEQAAALAQVAGIPLMATNDVLYHTAERRPLQDVLTAIRLNTPVAEVG 220

Query: 245  -RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                   + +LK   EM  +F   P+AL  T+  A   +F L                D+
Sbjct: 221  LELSANAERHLKPPLEMARLFRRHPQALAETLRFAEELTFSLS---------------DL 265

Query: 304  QKEEENELRNKAV---AGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
            Q    +E     +   A LE RLA+   A+ Y +       +R++ EL +I R+ ++ YF
Sbjct: 266  QYNYPDEPTESGLGPQAELE-RLAREGAARRYPSGVPHSVIKRIEEELALIERLNYARYF 324

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D +++A+  +I +  GRGS A S+  + + IT++ P R   LFERF++ +R   PD
Sbjct: 325  LTVYDIVKYARSQDI-LCQGRGSAANSIVCFCIGITEVGPDRIDTLFERFISEERNEPPD 383

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  ++R+ VI+Y+  KY  +R A      S + ++ALR+V +A+ +       L  
Sbjct: 384  IDVDFEHEKRETVIQYIYEKYSSKRTALAAAVISYRGRSALREVSKAMGLSEDVRASLSG 443

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
             I       V  +    ++R      +DP+   ++E + ++ G  RH S H  G VI   
Sbjct: 444  SIWGWSTSEVGEK----EARAGGLDRSDPTSRHVMERANEIMGFPRHLSQHVGGFVITKD 499

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR----- 592
             L ++VP+ +    +  + +++   ++   ++K D L L  LT LQ++   L        
Sbjct: 500  RLDEIVPIVKTAMDERKMVEWDKDDLDAVKILKVDVLALGMLTCLQRAFILLTDHYPKAR 559

Query: 593  ---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
               G    L+ +P +D   Y ++    TLG+FQ+ES      L  ++P    D++  V++
Sbjct: 560  DPYGQPYVLASLPPEDKRVYDMIGRADTLGVFQIESRAQMSMLPRLKPKDFYDLVIEVAI 619

Query: 650  YRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             RPGPI  D +  Y  R+ GKEK     P ++ +L +T GV ++QEQ M+IA +  G+  
Sbjct: 620  VRPGPIQGDMVHPYLRRRQGKEKPEYQKPELEAILSKTLGVPLFQEQAMKIAIVAGGFRP 679

Query: 708  SEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             EAD LRRAM   K    +   ++R I G    G +K  A   F+ +  F +YGF +SHA
Sbjct: 680  GEADELRRAMATFKRTGTIGNYRQRMIDGMVGKGYTKDFAERCFKQIEGFGEYGFPESHA 739

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A++A++ Y + W KT YP  F AA +  +     +  +  +DAR   + I    VN    
Sbjct: 740  ASFALLVYASCWFKTFYPDVFCAAILNSQPMGFYQPAQLVRDARDHGVDIREVDVNCSAW 799

Query: 827  DFKV-----GDNRIYYSLAAIKGVGTTTA------RHIMEASADKPFDSLEDFCSRVDSK 875
            D  +        RI    A ++GV  T        R I   S ++    +EDF  R  S 
Sbjct: 800  DCTLEKVPFDPARILPRHADMRGVIETNHAVRLGFRQIKGLSKER----MEDFAKRRGS- 854

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI---QKYAQWVEKNRTNKHENIFAHEKG 932
                  +  +     LD     R+    +  +I   ++ A W  +    K     A EK 
Sbjct: 855  --GYETVRDVWLRSGLDVDEIERLAQADAFRSIGLDRRAALWEVRALGAKS----AAEKL 908

Query: 933  TFSDKITLEKFSVENSSV--------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
               D+  L    +E  +            ++ R LG     HP+   +  L + G+    
Sbjct: 909  PLFDQPALRLRELEPETKLPKMPLGEHVIHDYRSLGLSLKAHPVAFLRERLDRAGVTPNA 968

Query: 985  ESVATIRGNNIRLAAMVVSKQQ 1006
               +   G  + +A +V+ +Q+
Sbjct: 969  NLPSQRDGRRVSVAGLVLVRQR 990


>gi|146301311|ref|YP_001195902.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
 gi|146155729|gb|ABQ06583.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
          Length = 1017

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 208/697 (29%), Positives = 346/697 (49%), Gaps = 51/697 (7%)

Query: 218 LFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
           +F ++ +Y  H +L AV  + ++S+            +   +E+  ++ D P  ++NT  
Sbjct: 157 VFRTKREYNLHRILRAVDLNELLSKLGSEDCCQKSDMMIPETELTDLYKDYPLIIQNTRY 216

Query: 277 IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA--VAGLEVRLAQGAIAK-GYH 333
           I   C+F     +P              K +++  +NKA  +A L     +G + + G H
Sbjct: 217 IIEHCNFQYDFESP--------------KNKKHYTKNKAGDIALLTTLAEEGLVWRYGRH 262

Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
             + + R++ EL VI  ++F GYFLI  D I+++      +  GRGSGA S+ AY L IT
Sbjct: 263 NPEAKARVEKELKVINDLEFCGYFLITWDIIRYSNSRGF-LHIGRGSGANSIIAYCLGIT 321

Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
           DI PL   L FERFLN +R S PDFDID+    RD +++Y+ ++YG+E VA   T    +
Sbjct: 322 DICPLELDLYFERFLNENRKSPPDFDIDWSWKERDVILKYIFDRYGYENVAFCGTNVEFK 381

Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
            ++  R+VG+   +P  ++D L K       +P+ L               +  V  + +
Sbjct: 382 YRSIFREVGKVFGLPKDELDLLAK-------NPMKLHQ------------TNSIVSLVQQ 422

Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
               LE      S H+ GI+I + PL+   P+    +   P+  F+M   E  G  KFD 
Sbjct: 423 YGMMLEKYPNMRSMHSCGILISEEPLTNYTPLEMPPKG-FPIVLFDMHTAEDIGFDKFDI 481

Query: 574 LGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE-TYHLLTTKG-TLGIFQLESSGMRQ 630
           L  + +  +  ++  + Q RG+++++       +E + ++   +G T+G F +ES  MR 
Sbjct: 482 LSQRGIGHIDDTVKIIEQNRGIRINIRDTRLSKNEQSANVYLAQGRTIGCFYIESPAMRG 541

Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            L  ++ D  + ++A  S+ RPG   + ++  Y  R N   K    HP+ +  L ET G+
Sbjct: 542 LLRRLKCDNYKTLVAASSIIRPGVAQSGMMKEYIFRHNNPSKFEYFHPVFEKELGETYGI 601

Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK--IKEEMDKQKERFISGASKNGISKTIA 746
           ++YQE V++IA    G S ++ D+LRRAM  K   K  + K K+ F   AS  G  + ++
Sbjct: 602 MVYQEDVIKIALHYGGLSAADGDILRRAMSGKGRSKAALQKVKDDFFVAASAKGHPEELS 661

Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
             I+  +  FA Y F K+H+A+YAV SYQ+ ++K HYPVEF+ A +        + + + 
Sbjct: 662 REIYRQIESFAGYSFCKAHSASYAVESYQSLYLKVHYPVEFMVAVIN-NQGGFYRTEIYV 720

Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI-MEASADKPFDSL 865
            +AR     I  P VN    +  +    IY     ++G+ +  ++ I  E   +  + SL
Sbjct: 721 HEARMAGAVIHTPCVNKSQYETSLYGTDIYLGFMHLQGLDSKLSQFIAYERDRNGIYKSL 780

Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
           EDF +RV     N +V   L+F GA    G ++ QLL
Sbjct: 781 EDFINRVPMGIENVKV---LIFIGAFRFTGKTKNQLL 814



 Score = 41.2 bits (95), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 37/64 (57%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          ++L  HS +SL  G + L++++ + A     A A+TD N +    +F +   A+GI+P++
Sbjct: 1  MYLNCHSFHSLRYGTIPLDDLIRQTADCGVTAAALTDINTVTGIYDFIKGCEASGIKPLV 60

Query: 72 GCQL 75
          G + 
Sbjct: 61 GIEF 64


>gi|299532169|ref|ZP_07045563.1| DNA polymerase III, alpha subunit [Comamonas testosteroni S44]
 gi|298719831|gb|EFI60794.1| DNA polymerase III, alpha subunit [Comamonas testosteroni S44]
          Length = 1136

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 294/1092 (26%), Positives = 474/1092 (43%), Gaps = 164/1092 (15%)

Query: 3    QYLEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            Q +++ P ++  L   S +S L GA S   ++ +  +    A+A+TD  ++  A+   + 
Sbjct: 31   QGMDRGPLAYAELHCLSHFSFLRGASSPAELVHRAKSLGYAALALTDECSVAGAVRAHEA 90

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELV---- 116
            A  + +  I G +                  F   P  IV+LV   +G+  L E +    
Sbjct: 91   ARDSDLHLIHGSE------------------FAWGPLRIVVLVRDLQGWGNLCEFITVAR 132

Query: 117  SRM----YLLDQGKQSVRICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            SR     YL+D+          W L + G E L++        +D +     +   E   
Sbjct: 133  SRAAKGEYLVDESS-------PWQLLQQGCECLLL---PQREQLDASDLIAVTACLENVA 182

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLA-YTHELPLVATNNSLFLSEEDYEAHDV 230
              F     + L++ ++ H   D     Q +Q A     LPL+A  +    +       DV
Sbjct: 183  AHFST---NILWLGVELHLAPDDSLWLQTLQQAGVVLGLPLLACGDVHMHARSRKPLQDV 239

Query: 231  LMAVAHSTVVSQKD---RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-- 285
            + A+     V++     +P    + +L++R  + S++  +   LE T+E+A RCSF L  
Sbjct: 240  VTAIRLGRTVAECGFALQPNA--ERHLRSRLRLASLYPRV--MLEATLELAGRCSFSLDE 295

Query: 286  -QVHAP---ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
             + H P   +LP                    + +A L    A G   +G   +D   +L
Sbjct: 296  IRYHYPQESVLPGMTA---------------TQTLAWLTWDGAAGRYPQGI-PEDVHDQL 339

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
              EL +I   K+  YFL V D +++A+   I +  GRGS A S   Y L IT +DP   +
Sbjct: 340  HKELALIEDQKYEMYFLTVHDIVRYARSVGI-LCQGRGSAANSAVCYCLGITAVDPENNN 398

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERF++ +R   PD D+DF   RR+EVI+Y+  KYG +R A        ++++ALRDV
Sbjct: 399  LLFERFISKERSEPPDIDVDFEHARREEVIQYIYGKYGRDRAALTAVVSCWRSRSALRDV 458

Query: 462  GRALQMPYSQVDRLCK----LIPNDPAHPVSLQAIADDSRFREARLADP----------- 506
            G+ L +P   +D L K       +  A   +    AD +   +A  A P           
Sbjct: 459  GKVLGLPADLIDALAKGQYWFSEHAQAQAQTHAEAADSAEEDQAPEALPEDWVQRKLQEA 518

Query: 507  -----------SVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                          RL   +E++ +L    RH S H  G V+ +  L++LVP+     + 
Sbjct: 519  EVLASEMNCAVGAHRLRLWIELAWQLRDSPRHLSQHVGGFVLTEGKLTRLVPVEPATMAK 578

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHL 611
              V Q++   ++  GL+K D L L  LT+L+ +L+  A+ RG    L  IP +D  TY +
Sbjct: 579  RSVIQWDKDDLDVVGLLKVDVLALGMLTMLRNALNERARWRGEPWGLHQIPQEDAATYEM 638

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY-----NNRKN 666
            +    T+G FQ+ES      L  +QP    D++  V++ RPGPI   +V+       R  
Sbjct: 639  ICQADTVGTFQIESRAQMSMLPRLQPRTFYDLVVEVAIVRPGPIQGGMVHPYLLARERAR 698

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEM 725
             K  +    P +   LK T GV I+QEQVMQIA   + +S  +AD LRR+M   K K  +
Sbjct: 699  RKLPLKLEKPELANALKRTLGVPIFQEQVMQIAMDAAKFSAGKADELRRSMAAWKRKGGV 758

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             K +   I G    G     A  IF  +  F +YGF +SHA ++A+++Y +AW+K H P 
Sbjct: 759  HKFERPLIDGMVARGYKLEFAQAIFAQMLGFGEYGFPESHAYSFALLAYASAWLKRHEPA 818

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP-------------------PSVNTPCV 826
             FL A +  +        +  QDAR+  ++++P                     V  P  
Sbjct: 819  IFLQALLNAQPMGFYSPSQLVQDARRHGVRVLPVDVCHSHWHCTLEAPLQAMRGVAQPQP 878

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
              ++G NR+         +G   A  I   +A  P+  + D   R    +L++  +E+L 
Sbjct: 879  AVRLGLNRVAR-------LGKAAALRIEGEAAQAPWKDVSDLAMRA---RLDKADMEALA 928

Query: 887  FAGALDCF-GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDKITLE 941
             A AL    G+ R Q+            W    + +    IFA    HE G     + L 
Sbjct: 929  AADALRSLAGHRRQQM------------WDAAAQASL-PPIFAQAAIHEPG-----LELP 970

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            + + E   + F+      G     HPL + +P L + G+K   E    + G  +R   +V
Sbjct: 971  Q-AAEGEEIMFDYA--ATGLSLRRHPLALLRPRLARHGLKTAAELRHMLPGQKVRACGIV 1027

Query: 1002 VSKQQKKTRKGS 1013
              +Q+  T  G+
Sbjct: 1028 TVRQRPPTANGT 1039


>gi|227537930|ref|ZP_03967979.1| DNA polymerase III alpha subunit [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242232|gb|EEI92247.1| DNA polymerase III alpha subunit [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 972

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 230/890 (25%), Positives = 420/890 (47%), Gaps = 95/890 (10%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           ++L   + +S   G  S   +++   A     +A+T+ NN   + +F  K    GI+PI+
Sbjct: 1   MYLNCKTWFSYHYGTFSSKQLVEDAKALDIHTLALTNINNTADSWDFVLKCREQGIKPIL 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++  D                 V   +LL     G+ ++ E +S     +Q K++   
Sbjct: 61  GTEIRND----------------HVFCYILLARNETGFFQINEFLSAY---NQRKEN--- 98

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                 E+ TE L ++       +        S + E  L+  +    +RL   LQ+   
Sbjct: 99  -FPAEPELSTEHLWIIYRYGQKSV--------SALREGELIGLRPQDLNRL--ELQQELA 147

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-P 250
            DR+     V L+     P+   + + F        H +L A+A +T++S+     +   
Sbjct: 148 ADRF-----VMLS-----PVTFQDRTYF------NLHRLLRAIARNTLLSKLLPEDIAGS 191

Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
           D  L +  E+V  F+  P  +  T+++A  C   +++      ++     +D    + + 
Sbjct: 192 DEMLLSEVELVRQFARFPTVISRTIQVADSCHISMELKTDKNRKYFTTTEED----DRHL 247

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           LR  A+ G  +R        G   ++  +R++ EL +I +  F+ YFLI+ D +++A + 
Sbjct: 248 LRKLAMEGCVMRY-------GTEHKEAFERVEKELKMIGKQGFNAYFLIIWDILRYAHER 300

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
                 GRGSGA S+ AY L ITD+DP++  L FERFLNPDR S PDFDIDF    RD +
Sbjct: 301 GF-YHVGRGSGANSIVAYCLRITDVDPIKLDLYFERFLNPDRSSPPDFDIDFSWKDRDAI 359

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
             Y+  +YG + V+ +  + + + +A +R++G+   +P +++D+L               
Sbjct: 360 FDYMFKRYGRQHVSLLGMYSTFKRRAIIRELGKVFGLPKAEIDQLVAQ------------ 407

Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   RE R  D     + +  Q LE    H S HA G++I ++P+     +    +
Sbjct: 408 --------REWRTEDKIQGWIHKYGQLLEHFPNHLSVHAGGVLISEKPICHYAAVELPPK 459

Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP--FDDHE 607
            D      +M   E+ GL KFD L  + L  ++ +L  + +  G  +D+  +   F+D  
Sbjct: 460 -DFQTIHMDMFEAERVGLFKFDILSQRGLGHIKDALQLIEENTGKHIDIHQVERFFEDPL 518

Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRK 665
               + +  T+G F +ES  MRQ L  +Q      ++A  S+ RPG   + ++  Y  R 
Sbjct: 519 LAEKIRSGDTIGCFYIESPAMRQLLGKLQCSDYLTLVAASSIIRPGVAQSGMMKQYIERY 578

Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE- 724
           + ++K++ +HP +  +L ET GV++YQE V+++A   +G SL +AD+LRRAM  K + E 
Sbjct: 579 HDRDKVLYLHPKMKELLAETFGVMVYQEDVIKVAHHFAGISLDQADILRRAMSGKYRSEN 638

Query: 725 -MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +K ++ F     + G  + +   ++  +  F  Y F K H+A++AV SYQ+ ++KT+Y
Sbjct: 639 KFEKLRQTFFDNCRERGYEEQVTREVWRQMESFGGYSFAKGHSASFAVESYQSLFLKTYY 698

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
           P EF  A +        + + + Q+  +    +  P +N       + ++ +Y  L  ++
Sbjct: 699 PREFYVAVIN-NFGGFYRTEFYFQELFKTGAHVQLPCINHSQYYTNIVNDTVYVGLIHLQ 757

Query: 844 GVGTTTARHIM-EASADKPFDSLEDFCSRVDS--KKLNRRV-LESLVFAG 889
           G+    A +I+ E   +  +  L DF +R+    ++LN  + +++L F G
Sbjct: 758 GLEEKFAHNIITERRKNGIYRDLNDFIARLSPGMEQLNLLIRIDALRFTG 807


>gi|264678326|ref|YP_003278233.1| DNA polymerase III subunit alpha [Comamonas testosteroni CNB-2]
 gi|262208839|gb|ACY32937.1| DNA polymerase III, alpha subunit [Comamonas testosteroni CNB-2]
          Length = 1136

 Score =  299 bits (766), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 292/1091 (26%), Positives = 477/1091 (43%), Gaps = 158/1091 (14%)

Query: 1    LTQYLEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
            + Q + + P ++  L   S +S L GA S   ++ +  +    A+A+TD  ++  A+   
Sbjct: 29   VAQGMGRGPLAYAELHCLSHFSFLRGASSPAELVHRAKSLGYAALALTDECSVAGAVRAH 88

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELV-- 116
            + A  + +  I G +                  F   P  IV+LV   +G+  L E +  
Sbjct: 89   EAARDSDLHLIHGSE------------------FAWGPLRIVVLVRDLQGWGNLCEFITV 130

Query: 117  --SRM----YLLDQGKQSVRICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              SR     YL+D+          W L + G E L++        +D +     +   E 
Sbjct: 131  ARSRAAKGEYLVDESS-------PWQLLQQGCECLLL---PQREQLDASDLIAVTACLEN 180

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLA-YTHELPLVATNNSLFLSEEDYEAH 228
                F     + L++ ++ H   D     Q +Q A     LPL+A  +    +       
Sbjct: 181  VAAHFST---NILWLGVELHLAPDDSLWLQTLQQAGVVLGLPLLACGDVHMHARSRKPLQ 237

Query: 229  DVLMAVAHSTVVSQKD---RPRVTPDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFI 284
            DV+ A+     V++     +P    + +L++R  + S++   P A LE T+E+A RCSF 
Sbjct: 238  DVVTAIRLGRTVAECGFALQPNA--ERHLRSRLRLASLY---PWAMLEATLELAGRCSFS 292

Query: 285  L---QVHAP---ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
            L   + H P   +LP                    + +A L    A G   +G   +D  
Sbjct: 293  LDEIRYHYPQESVLPGMTA---------------TQTLAWLTWDGAAGRYPQGI-PEDVH 336

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             +L  EL +I   K+  YFL V D +++A+   I +  GRGS A S   Y L IT +DP 
Sbjct: 337  DQLHKELALIEDQKYEMYFLTVHDIVRYARSVGI-LCQGRGSAANSAVCYCLGITAVDPE 395

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
              +LLFERF++ +R   PD D+DF   RR+EVI+Y+  KYG +R A        ++++AL
Sbjct: 396  NNNLLFERFISKERSEPPDIDVDFEHARREEVIQYIYGKYGRDRAALTAVVSCWRSRSAL 455

Query: 459  RDVGRALQMPYSQVDRLCK--------------------LIPNDPAHPVSLQAIADDSRF 498
            RDVG+AL +P   +D L K                        +   P +L       +F
Sbjct: 456  RDVGKALGLPADLIDALAKGQYWFSEHAQAQAQTHAEAADSAEEEQAPEALPEDWVQRKF 515

Query: 499  REARLADPSVD--------RL-LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +EA +    ++        RL +E++ +L+   RH S H  G V+ +  L++LVP+    
Sbjct: 516  QEAEVLAREMNCAVGAHRLRLWIELAWQLKDSPRHLSQHVGGFVLTEGKLTRLVPVEPAT 575

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
             +   V Q++   ++  GL+K D L L  LT+L+ +L+   + RG    L  IP +D  T
Sbjct: 576  MAKRSVIQWDKDDLDVVGLLKVDVLALGMLTMLRNALNERTRWRGEPWGLHQIPQEDAAT 635

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY-----NN 663
            Y ++    T+G FQ+ES      L  +QP    D++  V++ RPGPI   +V+       
Sbjct: 636  YEMICQADTVGTFQIESRAQMSMLPRLQPRTFYDLVVEVAIVRPGPIQGGMVHPYLLARE 695

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R   K  +    P +   LK T GV I+QEQVMQIA   + +S  +AD LRR+M   K K
Sbjct: 696  RARRKLPLKLEKPELANALKRTLGVPIFQEQVMQIAMDAAKFSAGKADELRRSMAAWKRK 755

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              + K +   I G    G     A  IF  +  F +YGF +SHA ++A+++Y +AW+K H
Sbjct: 756  GGVHKFERPLIDGMVARGYKLEFAQAIFAQMLGFGEYGFPESHAYSFALLAYASAWLKRH 815

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP-------------------PSVNT 823
             P  FL A +  +        +  QDAR+  ++++P                     V  
Sbjct: 816  EPAIFLQALLNAQPMGFYSPSQLVQDARRHGVRVLPVDVCHSHWHCTLEAPLQAMRGVAQ 875

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            P    ++G NR+         +G   A  I   +A  P+  + D   R    +L++  +E
Sbjct: 876  PQPAVRLGLNRVAR-------LGKAAALRIEGEAAQAPWKDVSDLAMRA---RLDKADME 925

Query: 884  SLVFAGALDCF-GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            +L  A AL    G+ R Q+            W    + +    IFA +      ++ L +
Sbjct: 926  ALAAADALRSLAGHRRQQM------------WDAAAQASL-PPIFA-QAAIHEPRLELPQ 971

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             + E   + F+      G     HPL + +P L + G+K   E    + G  +R   +V 
Sbjct: 972  -AAEGEEIMFDYA--ATGLSLRRHPLALLRPRLARHGLKTAAELRHMLPGQKVRACGIVT 1028

Query: 1003 SKQQKKTRKGS 1013
             +Q+  T  G+
Sbjct: 1029 VRQRPPTANGT 1039


>gi|149915320|ref|ZP_01903847.1| DNA polymerase III, alpha subunit [Roseobacter sp. AzwK-3b]
 gi|149810609|gb|EDM70450.1| DNA polymerase III, alpha subunit [Roseobacter sp. AzwK-3b]
          Length = 962

 Score =  299 bits (766), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 240/850 (28%), Positives = 403/850 (47%), Gaps = 75/850 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F  L + S+++ L GA      + + A    PAIAI D N++   +     A   G Q  
Sbjct: 2   FAELSITSNFTFLTGASHPEEYVQRAACLGLPAIAIADDNSVAGIVRAHAAAREIGRQ-- 59

Query: 71  IGCQLDIDMQDN---------LKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLIE----LV 116
           +  +  ++ +D          L          P  +P+  L ++       L +      
Sbjct: 60  VAERQALEARDGPIGPPAPEGLAADGPDWANIPCLIPAARLCLTEGVTLTALPQDRTGWA 119

Query: 117 SRMYLLDQGKQSVR--ICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
           S   LL  G++      C   L ++  G EGL +L     GP   A +     +A+ R L
Sbjct: 120 SLCRLLTTGRRRTEKGACHLTLDDVLQGAEGLELLLH-PPGPAQAADW-----LAQARRL 173

Query: 173 TFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             +   G ++++ +   + G D  R  ++ +LA    LP +A+           +  DV+
Sbjct: 174 VGR--LGAQMHLLMAPEYDGQDSTRFDRLAKLADRLGLPALASACPRMHHGRRRKLADVM 231

Query: 232 MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            A+     V +  R  +   +  L++ +EM+ +F+    A+    E+A R +F L     
Sbjct: 232 TAIRKGVRVDELGRAALANAECRLRSEAEMLRLFAGHEAAVHQAGEVAARLAFSL----- 286

Query: 291 ILPRFIEKECDDIQKEEENE----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
                     D+++ E  +E          LR  A+ GL+ R   GA  K       R  
Sbjct: 287 ----------DELRYEYPSEVAHGETPAERLRRLALKGLDWRYPHGASDK------VRAM 330

Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
           L+ EL +I ++ +  YFL V D + +A+  +I +  GRGS A SV  Y L +T + P   
Sbjct: 331 LEHELTLIGKLGYEPYFLTVHDVVAFARSRDI-LCQGRGSAANSVVCYCLGVTSVSPEIG 389

Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
           +++FERF++  R   PD D+DF  +RR+EVI+++  +YG +R     T    + K A+R+
Sbjct: 390 TMVFERFVSEARNEPPDIDVDFEHERREEVIQWIYERYGRQRAGLCATVIHYRGKRAIRE 449

Query: 461 VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL---LEISQK 517
           VGRA+ +    +  L   +        S   +A D R RE  L DP   RL   +E+  +
Sbjct: 450 VGRAMGLSQDTISALSSQLWGF----FSSGQVARD-RIREIGL-DPDDRRLRQTMELVDE 503

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
           +EG  RH S H  G VI +  L +LVP+     ++  V  ++   I+  G++K D L L 
Sbjct: 504 IEGFPRHLSQHVGGFVITEGRLDELVPIENASMAERTVICWDKDDIDTLGILKVDVLSLG 563

Query: 578 TLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            LT ++K+ + LA+  G +  L+ +P +D   Y +L    ++G+FQ+ES      L  M+
Sbjct: 564 MLTCIRKAFELLARHHGQEHTLATLPPEDPRVYDMLCRADSVGVFQVESRAQMNFLPRMR 623

Query: 637 PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
           P C  D++  V++ RPGPI  D +  Y  R+NG+E++      +  +L +T GV ++QEQ
Sbjct: 624 PRCFYDLVIEVAIIRPGPIQGDMVHPYIRRRNGEEQVSFPSDALGAVLGKTLGVPLFQEQ 683

Query: 695 VMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            MQIA   +G+S  EAD LRR++   K    + + ++RF+ G  +NG     A   F  +
Sbjct: 684 AMQIAITGAGFSPDEADRLRRSLATFKKHGSVSEFRDRFLRGMKRNGYDMDFAERCFSQI 743

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             F  YGF +SHAA++A++ Y +AW+K H+P  F  A +  +        +  +DAR+  
Sbjct: 744 EGFGSYGFPESHAASFALLVYASAWIKCHHPGIFACALLNSQPMGFYAPAQIVRDAREHG 803

Query: 814 IQIMPPSVNT 823
           + + P  +N 
Sbjct: 804 VTVRPVCINA 813


>gi|85704565|ref|ZP_01035667.1| DNA polymerase III, alpha subunit [Roseovarius sp. 217]
 gi|85670973|gb|EAQ25832.1| DNA polymerase III, alpha subunit [Roseovarius sp. 217]
          Length = 956

 Score =  299 bits (766), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 226/748 (30%), Positives = 355/748 (47%), Gaps = 40/748 (5%)

Query: 178 FGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
           F DRL++ L  H  G D  R  ++ +LA    LP +A    L          DVL A+  
Sbjct: 172 FADRLHLVLSPHYDGRDPARFDRLTELAARLGLPTIAAAAPLMHRGHRRRLADVLSAIRL 231

Query: 237 STVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
              V    R  +   +  L++ +EM  ++     A+E   ++A R  F L       P  
Sbjct: 232 GVTVDALGRHALCNAEQRLRSEAEMRHLYRGHEAAVERASDLAARLGFSLDALRYDYP-- 289

Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
              E  + +   +  LR  A+ GL+ R   GA      +   R  L+ EL +IA++++  
Sbjct: 290 --SEATNGETPSQR-LRRLALEGLDWRYPDGA------SDRVRGMLEHELTLIAKLRYEP 340

Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
           YFL V D + +A+   I +  GRGS A SV  Y L +T + P   +++FERF++  R   
Sbjct: 341 YFLTVNDVVAFARSRGI-LCQGRGSAANSVVCYCLGVTSVSPEIGTMVFERFVSEARDEP 399

Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
           PD D+DF  +RR+EVI+++  +YG  R     T    + K A+R+VGRA+ +     D L
Sbjct: 400 PDIDVDFEHERREEVIQWIYERYGRHRAGLCATVIHYRTKRAIREVGRAMGL---TEDIL 456

Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGI 532
             +      H    +   D  R RE  L DP   RL   L + +++ G  RH S H  G 
Sbjct: 457 AAMASQIWGH--GGEGALDPLRLREIGL-DPRNRRLAMTLGLIREIIGFPRHLSQHVGGF 513

Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
           VI +  L +LVP+     ++  V  ++   I+  G++K D L L  LT ++K+ D L Q 
Sbjct: 514 VITEGRLDELVPIENASMAERTVICWDKDDIDTLGILKVDVLALGMLTCIRKAFDLLVQY 573

Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
           RG +  L+ +P +D + Y +L+   +LG+FQ+ES      L  M+P    D++  V++ R
Sbjct: 574 RGTRYSLATLPPEDAQVYEMLSRADSLGVFQVESRAQMNFLPRMRPRTFYDLVIQVAIIR 633

Query: 652 PGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
           PGPI   +V+    R+NG+E +      +  +L +T GV ++QEQ MQIA + +G++  E
Sbjct: 634 PGPIQGDMVHPFIRRRNGEEAVSFPSDDLGRVLGKTLGVPLFQEQAMQIAIIGAGFTPEE 693

Query: 710 ADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
           AD LRR++   K    + + + RF+ G   NG     A   F  +  F  YGF +SHAA+
Sbjct: 694 ADRLRRSLATFKKHGNVSEFRNRFLCGMRANGYDAEFAERCFSQIEGFGSYGFPESHAAS 753

Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
           +A + Y +AW+K H+P  F  A +  +        +  +DAR   + + P  +N    D 
Sbjct: 754 FAHLVYASAWIKCHHPAIFACALLNSQPMGFYAPAQIVRDARDHGVTVRPVCINASYWDN 813

Query: 829 KVGDNR-----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR--VDSKKLNRRV 881
            +  +R     +      IKG+    A  I  A  +  +   ++   R  V S  L R  
Sbjct: 814 TIEPDRQGRLALRLGFRQIKGIAQDEADWIAAARGNG-YTGPDEVWRRAGVPSAALTR-- 870

Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              L  A A    G SR   L     IQ
Sbjct: 871 ---LAEADAFAALGLSRRDALWQARAIQ 895


>gi|121594327|ref|YP_986223.1| DNA polymerase III subunit alpha [Acidovorax sp. JS42]
 gi|120606407|gb|ABM42147.1| DNA polymerase III, alpha subunit [Acidovorax sp. JS42]
          Length = 1064

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 262/912 (28%), Positives = 410/912 (44%), Gaps = 102/912 (11%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  L   S++S   GA     ++ +       A+A+TD  ++   +     A A G+ 
Sbjct: 4   PAYAELHALSNFSFQRGASHPQELVQRAHKLGYSALALTDECSVAGVVRAHGAAQALGLP 63

Query: 69  PIIG---CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQ 124
            I+G   C  D+                     IV L    +G+  L E ++       +
Sbjct: 64  LIVGSEFCWGDV--------------------RIVALARDVQGWGDLCEFITAARQRAGK 103

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLY 183
           G   V     W    G E L+ L          AF   S  VA    L + + LFG   +
Sbjct: 104 GGYRVDAQSPWALLQGCEVLLALR-------REAFVDASDLVAVSACLESVRGLFGSNCW 156

Query: 184 VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           + ++ H    D      + Q      LPLVA  +    S       DVL AV     V+ 
Sbjct: 157 LAVELHTAPDDGLWLRTLTQAGARLGLPLVAAGDVHMHSRAAKPLQDVLTAVRLGRSVAA 216

Query: 243 KD---RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                +P    +  L+ RS +  ++   P  L  T+++A RC+F L     I  R+   E
Sbjct: 217 CGFALQPHA--EKRLRPRSRLAGLYP--PALLAATLQVAARCTFSLN---EIKYRY-PLE 268

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                      L      G  VR   G + +   AQ     ++ EL +IA   +  YFL 
Sbjct: 269 TVQPGMTASQTLACLTWEGARVRYPDG-VPEAVAAQ-----VEKELALIAECGYEMYFLT 322

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V D +++A+   I +  GRGS A S   Y L IT +DP +  LLFERF++ +R   PD D
Sbjct: 323 VHDIVRYARSQGI-LCQGRGSAANSAVCYCLGITAVDPQKTRLLFERFISRERSEPPDID 381

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK-- 477
           +DF  DRR+ VI+Y+ +KYG ER A      S + ++ALRDVG+AL +  + VD   K  
Sbjct: 382 VDFEHDRRETVIQYIYDKYGRERSAITAVVISYRTRSALRDVGKALGVAPALVDAFAKEH 441

Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADP----SVDRLLEISQKLEGLYRHASTHAAGIV 533
              +D      L A+A+       RL +P    +    L+++++L G  RH S H  G V
Sbjct: 442 HWFDDVLATEHLLALAE-------RLGEPLGAHTAALWLQLARQLRGFPRHLSQHVGGFV 494

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
           + +  L++LVP+         + Q++   ++  GL+K D L L  L+ L++ L+  A  R
Sbjct: 495 LTEGKLTRLVPVEPAAMDGRSIIQWDKDDLDAMGLLKVDVLALGMLSALRRCLEMRAALR 554

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
           G   DL+ IP +D  TY ++    T+G+FQ+ES      L  +QP    D++  V++ RP
Sbjct: 555 GESWDLADIPPEDPATYDMVCRADTVGVFQIESRAQMSMLPRLQPREFYDLVVQVAIVRP 614

Query: 653 GPIDNIVVY--------------NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
           GPI   +V+                R   +E     +P +   L+ T GV I+QEQVMQI
Sbjct: 615 GPIQGGMVHPYLQARERRRQWQRRQRTKREEPFPIEYPRLGNALRRTLGVPIFQEQVMQI 674

Query: 699 AQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
           A   +G+S  +AD LRR+M   + K E+ + ++ F  G   NG     A  +F+ +  F 
Sbjct: 675 AIDGAGFSAGQADELRRSMAAWRRKGEVHRFEKPFKDGLLANGYPPEFADRLFQQILGFG 734

Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
           +YGF +SHA ++A+++Y ++W+K H P  FLAA +  +        +  QDAR+  ++++
Sbjct: 735 EYGFPESHAYSFALLAYASSWLKRHEPACFLAALLNAQPLGFYTPAQLVQDARRHGVRVL 794

Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVG-----------------TTTARHIMEASADK 860
           P  V T  VD  + +      LA + GV                     A  +++A    
Sbjct: 795 PIDVATSDVDCTLEE-----PLAPVAGVSLAQPAVRLGLRLVAGLGAAAAERLVQARGSG 849

Query: 861 PFDSLEDFCSRV 872
           PF S ED   R 
Sbjct: 850 PFASTEDLALRA 861


>gi|309812892|ref|ZP_07706624.1| DNA polymerase III, alpha subunit [Dermacoccus sp. Ellin185]
 gi|308433170|gb|EFP57070.1| DNA polymerase III, alpha subunit [Dermacoccus sp. Ellin185]
          Length = 1248

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 187/565 (33%), Positives = 296/565 (52%), Gaps = 28/565 (4%)

Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
           +V+  + +  YFL VA      +     V   RGSGAGS+  Y L I+ +DP+   LL E
Sbjct: 368 DVVRHLGYPTYFLTVAQVCDLIRDMGGRVA-ARGSGAGSLITYLLGISGVDPIEHRLLME 426

Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
           RF    R S+PD DID    RR E+   +  ++G ERV  +    + + + A+RD G AL
Sbjct: 427 RFCTRARASLPDIDIDVESARRTEIYERIMERFGGERVTCVSMMETYRVRHAIRDAGAAL 486

Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            M  + VD + K  P+  A  V   AI +    R   LA+P +DRL ++ ++L+GL RH 
Sbjct: 487 GMVPADVDVIAKAFPHVAARDVR-HAIEELPELRARGLAEPELDRLFDLVERLDGLPRHI 545

Query: 526 STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
           + H  G+++ +  L+Q  PM        P++QF+   +E  GL+K D LG++  + +  +
Sbjct: 546 ALHPCGVILSNAGLAQRTPMEASWLG-FPMSQFDKDDVETLGLLKLDVLGIRMQSAMAHA 604

Query: 586 LDFLAQ-RGVKVDL---SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
           +  + +  G  VDL     +PFDD  T+ L+ T  TLG FQ+ES G R+ +    P   E
Sbjct: 605 VAEIERVEGAVVDLDDPECVPFDDEATFELIRTTRTLGCFQIESPGQRELIGKFGPQRFE 664

Query: 642 DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
           D+I  +SL+RPGP+  D I  +   + G      +H  + P L+ET GV+++ EQV++I 
Sbjct: 665 DLIIDISLFRPGPVKSDMITPFLRARQGWAPPEYLHESLRPALEETMGVVVFHEQVLRIF 724

Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
              +G +L++AD +RRAMG    +E  K +  +   A   G +      I+E+LA FA +
Sbjct: 725 AQTTGITLAQADEVRRAMGSSTGQE--KIELWWREAAQHRGYTSAERDRIWEVLAAFASF 782

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           GF K+HAAA+AV +YQ+AW+KTH+   F+A  +T +     K +    D R F + ++  
Sbjct: 783 GFCKAHAAAFAVPTYQSAWLKTHHLAAFVAGVLTHDPGMYPK-RLILADVRTFGVPVLGV 841

Query: 820 SVNTPCVDFKV------GDNRIYYSLAA----IKGVGTTTARHIMEASADKPFDSLEDFC 869
            +N    +++V      G +  +  L      +KG+       ++E    +P+ SL D  
Sbjct: 842 DINASRREYRVERVPGEGSDDDHLGLRIGFLDVKGMSEREMTSLVEG---QPYTSLTDVW 898

Query: 870 SRVDSKKLNRRVLESLVFAGALDCF 894
            R     L+R V+E L+  GA D  
Sbjct: 899 RRA---GLSRPVVERLLLVGAFDAL 920



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 10/121 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL+V SSYSL  G      ++ + A      +A+TD + L+ +++F +   AAG++PI
Sbjct: 3   FTHLRVASSYSLQYGTTPPATLVARAAELGYGRLALTDRDGLYGSVKFVEACSAAGLEPI 62

Query: 71  IGCQLDIDMQDNLKM---TNQGKTPFPTVPSIVLLVSTAE-------GYQRLIELVSRMY 120
           +G  L +  +  L+       G       P + +L   A        G+ +L  LV+  +
Sbjct: 63  LGVDLALAPERVLRARTPAKGGPARDERSPRVTVLARGAASGLAPGLGWAQLCRLVTDAH 122

Query: 121 L 121
           L
Sbjct: 123 L 123



 Score = 42.0 bits (97), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 38/82 (46%)

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            +   E  +LG   SGH +  Y P++R +G+    +  +   G  +  A + V+ Q    R
Sbjct: 1035 KVRAELDILGLDVSGHVMQFYAPLVRALGVSRACDLASLHGGETVWCAGIKVATQTPPVR 1094

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G R+ ++T  +     +A FF
Sbjct: 1095 SGRRVIFLTVDDGTGPADATFF 1116


>gi|319780655|ref|YP_004140131.1| DNA polymerase III subunit alpha [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166543|gb|ADV10081.1| DNA polymerase III, alpha subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 1115

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 231/845 (27%), Positives = 387/845 (45%), Gaps = 81/845 (9%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +    + S++S L GA     ++         AI + D N +   +   Q+A    +   
Sbjct: 9   YAEFGIQSNFSFLRGASKPEELVVAAKLLGFSAIGLADRNTVAGVVRAWQQAKVEKLSYH 68

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            GC+L  D                  P I+      +G+  L  ++++  L D+ ++   
Sbjct: 69  PGCRLVFD---------------DGTPDILAYPQDRKGWGHLCRMLTQANLRDENEKGAT 113

Query: 131 IC-----LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
           +      L W   +    L +L G S+G  D                  K  FG  L + 
Sbjct: 114 LLQRGDLLEWGDLMS---LAVLPGLSTGAQDSLALLGE----------LKGRFGRNLRLG 160

Query: 186 LQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +   + G DR+R  Q   LA +  +PL+ATN+ L+ + E     DVL A+  +T V++  
Sbjct: 161 VSPDYAGNDRFRIEQAATLAESAGIPLMATNDVLYHTAERRPLQDVLTAIRLNTPVAEVG 220

Query: 245 -RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            +     + +LK   EM  +F   P+AL  T+  A+  +F L                D+
Sbjct: 221 LQLSANAERHLKPPMEMGRLFRRHPQALAETLRFAQELTFSL---------------GDL 265

Query: 304 QKEEENELRNKAVAGLE--VRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYFL 358
           Q    +E     +       RLA+   A  Y A       +R++ EL +I R+ ++ YFL
Sbjct: 266 QYNYPDEPTESGLGPQAELARLAREGAANRYPAGVPDSVTKRIEEELALIERLNYARYFL 325

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V D +++A+  +I +  GRGS A SV  + + IT++ P +   LFERF++ +R   PD 
Sbjct: 326 TVYDIVKFARSKDI-LCQGRGSAANSVVCFCIGITEVGPEKIDSLFERFISEERNEPPDI 384

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DF  ++R+ VI+Y+  KY  +R A      S + ++ALR+V +A+ +       L   
Sbjct: 385 DVDFEHEKRETVIQYIYEKYSGKRTALAAAVISYRGRSALREVSKAMGLSEDVRASLSGS 444

Query: 479 IPNDPAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIV 533
           I        S   + +    +EAR       DP    ++E + ++ G  RH S H  G V
Sbjct: 445 IWG-----WSTSELGE----KEARAGGLDRTDPVSRHVMERANEIMGFPRHLSQHVGGFV 495

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--- 590
           I    L ++VP+ +    +  + +++   ++   ++K D L L  LT LQ++   L    
Sbjct: 496 ITRDRLDEIVPIVKTAMDERKMVEWDKDDLDAVKILKVDVLALGMLTCLQRAFTLLTDHY 555

Query: 591 -----QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
                + G    L+ +P +D + Y ++    TLG+FQ+ES      L  ++PD   D++ 
Sbjct: 556 PNARDEYGQPYVLATLPPEDRQVYKMICRADTLGVFQIESRAQMSMLPRLKPDNFYDLVI 615

Query: 646 LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            V++ RPGPI  D +  Y  R+ GKE+     P ++ +LK+T GV ++QEQ M IA +  
Sbjct: 616 EVAIVRPGPIQGDMVHPYLRRRQGKEQAEYQKPELEAILKKTLGVPLFQEQAMNIAIVAG 675

Query: 704 GYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
           G+   EAD LRRAM   K    +   ++R I+G    G +K  A   F+ +  F +YGF 
Sbjct: 676 GFKPGEADELRRAMATFKRTGTIGNYRDRMINGMVGKGYTKDFAERCFKQIEGFGEYGFP 735

Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           +SHAA++A++ Y + W KT YP  F AA +  +     +  +  +DA    + I    VN
Sbjct: 736 ESHAASFALLVYASCWFKTFYPDVFCAAILNSQPMGFYQPAQLVRDASDHGVDIRDVDVN 795

Query: 823 TPCVD 827
               D
Sbjct: 796 FSVWD 800


>gi|149184845|ref|ZP_01863163.1| DNA polymerase III alpha chain [Erythrobacter sp. SD-21]
 gi|148832165|gb|EDL50598.1| DNA polymerase III alpha chain [Erythrobacter sp. SD-21]
          Length = 1216

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 241/914 (26%), Positives = 404/914 (44%), Gaps = 118/914 (12%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV L + S +S L GA    +++ +  A    AI I D N +   +    +A    ++P 
Sbjct: 44  FVELGLVSCFSFLRGASDAVDLVLQARALGYDAIGIADANTMAGVVRVHTEAKTLKLKPC 103

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV--STAEGYQRLIELVS--RMYLLD--- 123
           IGC+++                  TV  +  L    + + Y RL  L+S  RM  L    
Sbjct: 104 IGCRIE------------------TVEGLAFLAYPKSRKAYGRLCRLISAGRMRTLSGEW 145

Query: 124 QGKQSVRICLSWL--------------------------------QEIGTEGLIMLTGGS 151
           Q K    I L  L                                +  G    + L    
Sbjct: 146 QEKGECDISLEMLAKHSAGVQLILIPPRDLDQTFTIEVESNVVPFRHPGPRAGVPLPSKE 205

Query: 152 SGP-------IDRAFFFNSSQ----VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV 200
           SGP       +DR     S +        +L T + +    LY +       D  +  Q+
Sbjct: 206 SGPPDQVRGDVDRVHMEGSFEDILPHLAAQLPTLRYIAAAFLYTD------SDVAQIEQL 259

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
             LA  + L ++ATN+  + + +     DV+ A+ H T V++         + YLK    
Sbjct: 260 DTLAKANGLSILATNDVHYATPDKRPLQDVMTAIRHKTTVARAGHLLHGNAERYLKPPET 319

Query: 260 MVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKECDDIQKEEENELRNKAV 316
           M  +F   P A+    E+A  C F L   Q   P       +E      E ++ L ++  
Sbjct: 320 MCRLFERWPHAISAAREVADACDFSLDELQYEYP-------EELYPGGAEPQDYLESETW 372

Query: 317 AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP--V 374
            G E R  +G              L  EL +I +M  + YFL + D + +A++   P  +
Sbjct: 373 KGAEWRYPEGV------PDSVTDTLHKELALIGKMDLARYFLTIKDIVDFARQKVDPPIL 426

Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
             GRGS A S   Y L IT++DP +  LLF+RF++ DR   PD D+DF  +RR+EVI+Y+
Sbjct: 427 CQGRGSAANSAVCYCLGITNVDPAQHQLLFDRFISEDRKEPPDIDVDFEHERREEVIQYL 486

Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
             KYG  R     T    + + A+R+VG+A+ +       L K +       +S +   +
Sbjct: 487 YRKYGRHRAGLCATVIHYRPRMAIREVGKAMGLTEDVTAALAKTVWGGWGREISEKHAQE 546

Query: 495 DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
                   + DP + R+L +++++ G+ RH S H  G ++ +  L++ VP+      +  
Sbjct: 547 TG----MDVTDPHLKRVLRLTEQMIGMPRHLSQHVGGFILTESALTETVPVGNGAMPERS 602

Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLT 613
             +++   IE  G++K D L L  LT ++K LD L    G  + L+ +P +D ETY +L 
Sbjct: 603 FIEWDKDDIEALGILKVDVLALGMLTCIRKCLDLLGDHHGRTLSLANVPREDPETYAMLR 662

Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKI 671
              +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  R+ G E +
Sbjct: 663 AGDSLGVFQVESRAQMNMLPRLRPRQFYDLVIQVAIVRPGPIQGDMVHPYLKRRRGAEPV 722

Query: 672 VSIHPL--------IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
           V   P         +  +L+ T GV I+QEQ M+IA   + +S  EA+ LR+AM   + +
Sbjct: 723 VIPAPSPQHGPPDELSSILERTLGVPIFQEQAMKIALDAAKFSSKEANRLRKAMATFRSR 782

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             +D+ ++  +      G  +  +   F  +  F +YGF +SHAA++A + Y ++W+K H
Sbjct: 783 GMVDELQDMMVERMVHRGYDRDFSQRCFNQIRGFGEYGFPESHAASFAHLVYVSSWLKCH 842

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVDFKVGDNRIYYSL 839
           +P  F  A +  +        +  +DA +  ++++P  VN     C   ++G+ R     
Sbjct: 843 FPAAFACALLNSQPMGFYAPAQIVRDAAEHGVRVLPADVNLSQWDCTLEEIGEGR----- 897

Query: 840 AAIKGVGTTTARHI 853
            A++G      +HI
Sbjct: 898 -AVEGDSGRLDKHI 910


>gi|330004312|ref|ZP_08304870.1| DNA polymerase III, alpha subunit [Klebsiella sp. MS 92-3]
 gi|328536684|gb|EGF63006.1| DNA polymerase III, alpha subunit [Klebsiella sp. MS 92-3]
          Length = 790

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 236/751 (31%), Positives = 369/751 (49%), Gaps = 60/751 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L V + +SL E AL  + +          AI   DT +L S +   Q   +AG    + C
Sbjct: 4   LMVRTDFSLGESALKASRVAKAAKELGYSAIISADTMSLASIIPLQQ---SAGDDLAVIC 60

Query: 74  QLDIDMQDN------LKMTNQGKTPFPTVP-----SIVLLVSTAEGYQRLIELVSRMYLL 122
            + + + DN      ++   +  +  P        S   L+   EGY+ L EL++     
Sbjct: 61  GVRLVISDNPFYEAAVRKAKEEGSEIPVCKLGRLYSFTALIKNDEGYKDLCELMTLGNRR 120

Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181
           +Q     RI L  L E  ++G I+L        DR   F+      K L    ++ G D 
Sbjct: 121 EQFHFFPRISLEQLAETYSKGNILLLTS-----DRDSIFHRQDFV-KILTKLLEVGGRDN 174

Query: 182 LY--VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            Y  V       YD+    + +++A   ++  VA   + +  EED +  D+   V ++  
Sbjct: 175 FYSVVYPIATPLYDQL-NMKAMKVANALKIAPVAFYPAYYEKEEDADLRDIAHMVINNIK 233

Query: 240 VSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEAL-----------ENTVEIARRCSFILQ 286
             Q  R  +    D+ ++NR  ++    +  + +           E   EI   CS+   
Sbjct: 234 TDQPYRFHIPHQRDNSIQNRKHLLVRLMEFSKRMGIEGISSAMVNETQDEIIAACSWRWH 293

Query: 287 VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDF 343
                LP   E E D + +         A  GL+ RL     G        Q Y  RL +
Sbjct: 294 EMPVSLPVMAEDEGDTLTR--------MAAEGLKRRLTTLEFGWKPPAEQYQVYINRLRY 345

Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
           EL+V+ ++ F GYFL+V + + WA+K +IPVGPGRGS AGS+ A+A+ IT+IDPLR  LL
Sbjct: 346 ELSVLKKLGFCGYFLMVENLLSWARKQDIPVGPGRGSSAGSLVAWAIGITNIDPLRHGLL 405

Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           FERF+NP+R+ +PD D+DF Q +R  V+ Y++  YG + VA I  F  L   +ALRD  R
Sbjct: 406 FERFINPERLDLPDADLDFSQAQRPRVLEYLEEHYGEKYVAGIPNFSYLGMASALRDTAR 465

Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +    +    +L P D       +         +   A+P      + + KL+ L R
Sbjct: 466 IYGVSTEDMAVSKQLKPFDDEGLTLEETREQLGALDKYAKANPEA---FDAACKLQSLMR 522

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
               HAAG+++   PL++  P+  ++R+ +    F+ ++ E  GLIK D LGL TL LL 
Sbjct: 523 SYGKHAAGVIVSGVPLTERTPV--ELRNGVRCIAFDKRFCESMGLIKLDVLGLATLDLLA 580

Query: 584 KSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE----GMQPD 638
            +  ++ +  G+ V+L  IP DD      +    T G+FQ ES GMR  L+    G++P 
Sbjct: 581 LAKRYIKENEGIDVNLDAIPLDDKRVLEGMALGETTGVFQFESGGMRNLLKNLGSGIKPM 640

Query: 639 CIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
             E  +A  +LYRPGP+ + ++  Y +   G E   S+HP +D + KET GV++YQEQ+M
Sbjct: 641 SFEMAVATTALYRPGPMQSGMMDTYVSVARGYEDAHSLHPSLDELTKETNGVLVYQEQIM 700

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
           + +Q+L+G+SLSEAD++R+A+GKK  E+M K
Sbjct: 701 KASQILAGFSLSEADMVRKAIGKKDIEKMKK 731


>gi|327191253|gb|EGE58296.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CNPAF512]
          Length = 1152

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 238/863 (27%), Positives = 404/863 (46%), Gaps = 73/863 (8%)

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD---RPR 247
            G DR   + +  LA  + +PL+ATN  L+   E     DV++A+     +SQ      P 
Sbjct: 195  GRDRQVFAVLAMLAARNRVPLIATNQPLYHHPERRPLSDVVIAIREHVQISQAGFLLAP- 253

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YLK+  EMV IF D P+A+ENT     + SF L+      P     E D  +  +
Sbjct: 254  -NAERYLKDSREMVRIFGDYPDAVENTQVFFGKLSFSLKELQHNYP----SENDPGETPQ 308

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E  L     AG   R  QG  +K        +++D+EL +I    ++ YFL V   IQ A
Sbjct: 309  ET-LERLTRAGAAKRYPQGVPSK------VAKQIDYELKLIGDKNYASYFLTVHRIIQHA 361

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            + +   +  GRGS A SV  Y L IT++DP + +LLF+RF++ DR   PD D+DF  DRR
Sbjct: 362  RYDLKVLCQGRGSAANSVICYCLEITEVDPQKSTLLFDRFISMDRDEPPDIDVDFEHDRR 421

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+++  +YG +         + + ++A R+V +A  +       +  L+        
Sbjct: 422  EEVIQFIYRRYGIDHAGLTAGVTTYRTRSAGREVAKAFGLSEDVQSAISSLVWG-----W 476

Query: 488  SLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            S   ++D D++     + DP    +L+ + +L G  RH + H  G VI    L ++VP+ 
Sbjct: 477  SEDNLSDRDAKAAGLDVKDPVTQNVLQYASELLGFPRHLTQHVGGFVITRDRLDEVVPIM 536

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
            +    D  + +++   ++   ++K D L L  LT L+K+   L     VK  L+ +   +
Sbjct: 537  KTAMPDRYMIEWDKDDLDNVKILKVDVLALGMLTCLRKAFSLLELHYDVKKTLADLGNRE 596

Query: 606  H-----ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            H       Y ++    TLG+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 597  HGDEGKPVYEMMGRADTLGVFQIESRAQMSMLPRLKPKIFYDLVIEVAIVRPGPIQGDMV 656

Query: 659  VVYNNRKNGKEKIVSI-HPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              Y  R+  + + + + +P   ++ +L+ T GV ++QEQ MQIA   +G+  +EAD LRR
Sbjct: 657  HPYLKRREQRARNIPVEYPSKELEAVLERTLGVPLFQEQAMQIAITAAGFRPAEADKLRR 716

Query: 716  AMG--KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            AM   K+     D +K RFI G          A   F  +  F +YGF +SHAA++A++ 
Sbjct: 717  AMATFKRTGTIGDFEK-RFIEGMVSKNYDPEFAKQCFNQIKGFGEYGFPESHAASFALLV 775

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP--------- 824
            Y ++W+K +YP  F AA +  +        +  +DAR+  ++IM   +N           
Sbjct: 776  YASSWLKAYYPDVFCAAMLNSQPMGFYAPAQLVRDAREHGVRIMAVDINESEWDCTLEEA 835

Query: 825  -----CVDFKVGDNR--------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                  VDF+ G  R        +      IKG+ +   + +++ +  + + S+ D   R
Sbjct: 836  VFDRKTVDFRHGQMREIIKTRHAVRLGFRQIKGLSSDDMKRLVD-NRGQGYGSVRDLWLR 894

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD--NIQKYAQWVEKNRTNKHENIFAH 929
                 L + V+E L  A A      SR + L ++   +++  A+ +      +H ++   
Sbjct: 895  ---SGLPKSVIERLADADAFRSIHLSRREALWAVRALDVKSAAEELPLFEQVRHIDLQPE 951

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
                  D +  E+            + R L      HP+   +  LRK GI    + ++ 
Sbjct: 952  PAAKLPDMLPGEQVI---------EDYRYLSLSLKAHPVSFLREELRKAGITRNVDLLSV 1002

Query: 990  IRGNNIRLAAMVVSKQQKKTRKG 1012
              G  + +A +V+ +Q+  + KG
Sbjct: 1003 PNGKRVTIAGLVLVRQRPGSAKG 1025


>gi|310814948|ref|YP_003962912.1| error-prone DNA polymerase [Ketogulonicigenium vulgare Y25]
 gi|308753683|gb|ADO41612.1| error-prone DNA polymerase [Ketogulonicigenium vulgare Y25]
          Length = 1060

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 257/943 (27%), Positives = 435/943 (46%), Gaps = 93/943 (9%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSAL----E 57
           +P++  L + ++++ L GA      + +      PAIA+TD N+L      ++AL    E
Sbjct: 2   TPAYAELCITTNFTFLRGAAHPEEFVLRATELALPAIAVTDWNSLAGVARAWTALRNLRE 61

Query: 58  FSQKACAAGIQP--IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
               A      P  +IG +L   +QD+             +  +VL V  A  Y RL +L
Sbjct: 62  DKDMAHLHAQLPKLLIGTRLI--LQDS------------AIEWLVLPVDIA-AYHRLSQL 106

Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           ++R  L  +  + +   LS    +  + +I++   +  P D    +      ++R   F 
Sbjct: 107 LTRGKLRAKKGECL---LSQEDLLDAQDMILI---ALPPADLGTAYAQISAMQRRFPGF- 159

Query: 176 KLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
                 +Y     R+ G D+        LA     P+VA  + L          DVL  +
Sbjct: 160 ------VYTGAAPRYDGTDQAWFDLCADLALRASAPMVAVGDVLMHRASRRPVADVLTCL 213

Query: 235 AHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
               T+ +   R     +  LK   +M  +F + P AL  TV+IA R SF L        
Sbjct: 214 REGITIDNIGTRALPNAERRLKGVGDMARLFRNHPAALRRTVQIADRISFDL-------- 265

Query: 294 RFIEKECDDIQKEEENELRNKAV--AGLEVRLAQGAI---AKGYHAQDYRQRLDFELNVI 348
                   D++ +  +E  +  +  A LE RLA+  +   +KG     Y+  LD EL+V+
Sbjct: 266 -------GDLRYDYPDEANDGELPQARLE-RLARAGLIRRSKGAAPDRYQGLLDKELSVV 317

Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
           A + ++ YFL V D + +A+  +I +  GRGS A S+  +AL ITD++P    ++FERF+
Sbjct: 318 AELGYAPYFLTVHDIVAYARSQDI-LCQGRGSAANSIICWALGITDVEPSMIGMVFERFI 376

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
           +  R   PD D+DF  +RR+EVI+++ ++Y  +R     T    + +AA+R+VG+ + + 
Sbjct: 377 SRHRREPPDIDVDFEHERREEVIQWIYDRYTRDRAGLCATVIHFRTRAAIREVGKVMGLR 436

Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHAS 526
                 L   I        +  A  D +  RE  L   D  + + + + +++ G  RH S
Sbjct: 437 ADVTAALAGQIWG------TSNAGTDGALMREVGLNPDDRRLSQTIALIREIIGFPRHLS 490

Query: 527 --------THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                    H  G VI    L  L P+      D    +++   I+  G++K D L L  
Sbjct: 491 QHVGGFFIQHVGGFVITRGRLDALCPISNAAMDDRTCIEWDKDDIDALGILKVDVLSLGM 550

Query: 579 LTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
           LT ++K+ + L ++G     L  +P +D  TY +L     +G+FQ+ES      L  M+P
Sbjct: 551 LTCIRKAFEMLKKQGAGSYTLDSVPQEDAATYQMLQRADAIGVFQVESRAQMNFLPRMKP 610

Query: 638 DCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
           +   D++  V++ RPGPI   +V  Y  R+   E+     P ++ + ++T GV ++QEQ 
Sbjct: 611 EQFYDLVIEVAIVRPGPIQGGMVKPYIRRRQKLEEPEPFGPALEAITRKTLGVPLFQEQA 670

Query: 696 MQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
           +QIAQ+ +GYS  +AD LRR++   +    + + +E F+ G   NG ++ +A   F  + 
Sbjct: 671 LQIAQVGAGYSAEDADKLRRSLASFRRMGTIGQHREIFVQGMIGNGYAREVAERCFGQIE 730

Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
            FADYGF +SHAAA+A+++Y ++W+K H+P  F  A +  +        +  +DAR+ N+
Sbjct: 731 GFADYGFPESHAAAFAMLTYVSSWLKCHHPAIFACALLNSQPMGFYAPAQIVRDAREHNV 790

Query: 815 QIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
           ++ P  VN    +  +     G   +      IKG     A  I  A  +  +  +E   
Sbjct: 791 EVRPICVNHSEWENTLEKRTDGALALRLGFRQIKGFREEDADWIARARGNG-YADVESLW 849

Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            R   +     VLE L  A A    G +R   L  +  I+  A
Sbjct: 850 LRAGIRPA---VLERLAEADAFASLGMTRRDALWDVRAIRAPA 889


>gi|126730885|ref|ZP_01746694.1| DNA polymerase III, alpha subunit [Sagittula stellata E-37]
 gi|126708601|gb|EBA07658.1| DNA polymerase III, alpha subunit [Sagittula stellata E-37]
          Length = 1041

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 264/946 (27%), Positives = 421/946 (44%), Gaps = 76/946 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ-- 68
           F  L + S++S L GA      +++ A      IAI D N++   +    +A     Q  
Sbjct: 2   FAELCITSNFSFLTGASHPEEYVERAAFLGIETIAICDENSVAGIVRAHSEAKEIAYQIR 61

Query: 69  ---PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA--EGYQRLIELVSRMYLLD 123
               II     I       +    + P  TVP ++        EG Q  +   SR    D
Sbjct: 62  EREEIIARDGLIGPPMPPGLPAPPRAPVDTVPRVIPGARLVFREGLQMTVLATSRRSWAD 121

Query: 124 -----------QGKQSVRICLSWLQE--IGTEGLI------MLTGGSSGPIDRA-----F 159
                       GK S  I L+ L E   G E ++         GG+ G + RA      
Sbjct: 122 LCRIISLGRRRAGKGSCDISLADLPEDMGGWEAILHPPRVPTAPGGAGGWLSRAEQVSRR 181

Query: 160 FFNSSQVAEKRLLT---------FKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHEL 209
           F  +S V    +              L   RL++ L  R+ G D  R   + +LA    +
Sbjct: 182 FARTSAVPSDGMDANGAPGVPPDRDALSPGRLHLALAPRYDGQDARRFDALARLAERLGI 241

Query: 210 PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLP 268
             VAT   +          DVL A+     V +  R  +   +  L++  EM  +     
Sbjct: 242 DTVATAQPMMHHGRRRRLADVLTAIRTRQRVDKLGRHALANAEQRLRSGDEMRRLLGPHA 301

Query: 269 EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
            A+    E+ARRC+F +       P  I       Q+     L   A  GL  R  QGA 
Sbjct: 302 AAVTRAGELARRCTFDIASLRYEYPSEITGTETATQR-----LSRLAHEGLAWRYPQGAP 356

Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
            K       R +LD EL +IA++K+  YFL V D + +A++  I +  GRGS A S+T Y
Sbjct: 357 DKA------RAQLDHELALIAKLKYEPYFLTVRDIVAFARERGI-LCQGRGSAANSITCY 409

Query: 389 ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
            L +T + P   +++FERF++  R   PD D+DF  +RR+EVI+++  +YG  R     T
Sbjct: 410 CLGVTSVSPEIGTMVFERFVSEARDEPPDIDVDFEHERREEVIQHIYERYGRHRAGICAT 469

Query: 449 FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
               + K A+R+VGRA+ +    +  L   +           +  ++ R RE  L DP+ 
Sbjct: 470 VIHYRGKRAIREVGRAMGLSEDTLGALSSQLWG-----FFSTSGMEEQRMREIGL-DPTD 523

Query: 509 DRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
            RL   +E+  ++ G  RH S H  G ++ +  L +LVP+         V  ++   I+ 
Sbjct: 524 RRLQLTMELIHEIIGFPRHLSQHVGGFIVTEGRLDELVPIENASMEGRTVICWDKDDIDA 583

Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            G++K D L L  LT ++K+ D L    G    L+ +P +D E Y +L    +LG+FQ+E
Sbjct: 584 LGILKIDVLSLGMLTCIRKAFDLLKLHHGTTHTLATLPPEDPEVYDMLCRADSLGVFQVE 643

Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPML 682
           S      L  M+P    D++  V++ RPGPI  D +  Y  R+NG+E++      +  +L
Sbjct: 644 SRAQMNFLPRMRPRNFYDLVIEVAIIRPGPIQGDMVHPYIRRRNGEERVSFPSDALGEVL 703

Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGI 741
            +T GV ++QEQ MQIA   + ++ +EAD LRR++   K    + + + RF+ G   NG 
Sbjct: 704 GKTLGVPLFQEQAMQIAITGANFTPTEADRLRRSLATFKKHGSVSEFRTRFMKGMRDNGY 763

Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            +  A   F  +  F  YGF +SHAA++A++ Y +AW+K H+P  F  A +  +      
Sbjct: 764 DEAFADRCFSQIEGFGSYGFPESHAASFALLVYASAWLKCHHPAVFACALLNSQPMGFYA 823

Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEA 856
             +  +DAR+  + + P  +N    D  +     G   +      IKG+    A+ I  A
Sbjct: 824 PAQIVRDAREHGVAVRPIDINASYWDNALEPDGRGGLALRLGFRQIKGLSEDDAQWIACA 883

Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             +  + ++ D   R     L+ ++L  L  A A    G +R + L
Sbjct: 884 RGNG-YRTVRDVWRRA---GLSPKMLGRLSEADAFASIGLNRREAL 925


>gi|300772563|ref|ZP_07082433.1| DNA polymerase III alpha subunit [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300760866|gb|EFK57692.1| DNA polymerase III alpha subunit [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 972

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 230/890 (25%), Positives = 420/890 (47%), Gaps = 95/890 (10%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           ++L   + +S   G  S   +++   A     +A+T+ NN   + +F  K    GI+PI+
Sbjct: 1   MYLNCKTWFSYHYGTFSSKQLVEDARALDIHTLALTNINNTADSWDFVLKCREQGIKPIL 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++  D                 V   +LL     G  ++ + +S     +Q K++   
Sbjct: 61  GTEIRND----------------HVFCYILLARNETGLFQINQFLSAY---NQRKEN--- 98

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                 E+ TE L ++       +        S + E  L+  +    +RL   LQ+   
Sbjct: 99  -FPAEPELSTEHLWIIYRYGQKSV--------SALREGELIGLRPQDLNRL--ELQQDLA 147

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-P 250
            DR+     V L+     P+   + + F        H +L A+A +T++S+     +   
Sbjct: 148 ADRF-----VMLS-----PVTFQDRTYF------NLHRLLRAIARNTLLSKLLPEDIAGS 191

Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
           D  L++  E+V  F+  P  +  T+++A  C   +++      ++     +D    + + 
Sbjct: 192 DEMLQSEVELVRQFARFPTVISRTIQVADSCHISMELKTDKNRKYFTTTEED----DRHL 247

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           LR  A+ G  +R        G   ++  +R++ EL +I +  F+ YFLI+ D +++A + 
Sbjct: 248 LRKLAMEGCVMRY-------GTEHKEAFERVEKELKMIGKQGFNAYFLIIWDILRYAHER 300

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
                 GRGSGA S+ AY L ITD+DP++  L FERFLNPDR S PDFDIDF    RD +
Sbjct: 301 GF-YHVGRGSGANSIVAYCLRITDVDPIKLDLYFERFLNPDRSSPPDFDIDFSWKDRDAI 359

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
             Y+  +YG + VA +  + + + +A +R++G+   +P +++D+L               
Sbjct: 360 FDYMFKRYGRQHVALLGMYSTFKRRAIIRELGKVFGLPKAEIDQLVAQ------------ 407

Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   RE R  D     + +  Q LE    H S HA G++I ++P+     +    +
Sbjct: 408 --------REWRTEDKIQGWIHKYGQLLEHFPNHLSVHAGGVLISEKPICHYAAVELPPK 459

Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP--FDDHE 607
            D      +M   E+ GL KFD L  + L  ++ +L  + +  G  +D+  +   F+D  
Sbjct: 460 -DFQTIHMDMFEAERVGLFKFDILSQRGLGHIKDALQLIEENTGKHIDIHQVERFFEDPL 518

Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRK 665
               + +  T+G F +ES  MRQ L  +Q      ++A  S+ RPG   + ++  Y  R 
Sbjct: 519 LAEKIRSGDTIGCFYIESPAMRQLLGKLQCSDYLTLVAASSIIRPGVAQSGMMKQYIERY 578

Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE- 724
           + ++K++ +HP +  +L ET GV++YQE V+++A   +G SL +AD+LRRAM  K + E 
Sbjct: 579 HDRDKVLYLHPKMKELLAETFGVMVYQEDVIKVAHHFAGISLDQADILRRAMSGKYRSEN 638

Query: 725 -MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +K ++ F     + G  + +   ++  +  F  Y F K H+A++AV SYQ+ ++KT+Y
Sbjct: 639 KFEKLRQTFFDNCRERGYEEQVTREVWRQMESFGGYSFAKGHSASFAVESYQSLFLKTYY 698

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
           P EF  A +        + + + Q+  +    +  P +N       + ++ +Y  L  ++
Sbjct: 699 PREFYVAVIN-NFGGFYRTEFYFQELFKTGAHVQLPCINHSQYYTNIVNDTVYVGLIHLQ 757

Query: 844 GVGTTTARHIM-EASADKPFDSLEDFCSRVDS--KKLNRRV-LESLVFAG 889
           G+    A +I+ E   +  +  L DF +R+    ++LN  + +++L F G
Sbjct: 758 GLEEKFAHNIITERKKNGIYRDLNDFIARLSPGMEQLNLLIRIDALRFTG 807


>gi|312129356|ref|YP_003996696.1| DNA polymerase iii, alpha subunit [Leadbetterella byssophila DSM
           17132]
 gi|311905902|gb|ADQ16343.1| DNA polymerase III, alpha subunit [Leadbetterella byssophila DSM
           17132]
          Length = 1014

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 247/907 (27%), Positives = 415/907 (45%), Gaps = 111/907 (12%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-AGIQPI 70
           ++L  HS +SL  G + L  ++ +        +A+TD N +    +F +KAC  AGI+P+
Sbjct: 1   MYLNCHSYHSLRYGTIPLEELVAEAKRCGVKTLALTDINTVTGIYDF-EKACKDAGIKPV 59

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSV 129
           +G  +++  +D L                                   +Y+ L Q  Q +
Sbjct: 60  VG--MEVRKEDQL-----------------------------------LYIALAQNAQGI 82

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           +   + L E   EG  +L      PI   F         K L T   L  +     L R+
Sbjct: 83  KEICTLLTEHNCEGTPLL------PIAPEF---------KHLFTVYPL--ENCPPTL-RN 124

Query: 190 RGYDRYRESQVVQL------AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
           R Y   R  ++  L      AY   + ++A     F  E +Y+ H +L A+  + V+S+ 
Sbjct: 125 REYLGIRPDEIHSLIRPELRAYLDRMVVLAPVT--FRDENEYQLHRILRAIDKNVVLSKL 182

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
           D        Y++   E+  ++   P+ ++NT  I  +CSF      P   +      +  
Sbjct: 183 DH-FCKSHEYMRPEQELKELYKQYPQIIQNTQYILDQCSFSFDFKTPKNKKHFTSSLE-- 239

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+   L   A  GLE R        G    +   RL  EL VI  ++F+ YFLI  D 
Sbjct: 240 --EDRLLLEKLAYEGLEKRY-------GTENAEASARLKKELQVIHALRFNSYFLITWDI 290

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           ++++      +  GRGSGA S+ +Y L IT+I P+   L FERFLN +R S PDFDID+ 
Sbjct: 291 VRFSNSQGF-LHIGRGSGANSIVSYCLGITNICPIELDLYFERFLNLNRKSPPDFDIDWS 349

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RD ++ Y+  KYG   VA   T    + ++ LR+VG+   +P  ++D    ++ N P
Sbjct: 350 WKERDIILDYIFKKYGKHHVAFCGTNVEFKYRSILREVGKVFGLPKEELD----VLTNSP 405

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                 Q+  D          +  V ++      LE      S HA GI+I + PL+   
Sbjct: 406 ------QSTHDQ---------NSVVQQIHFYGSLLEKFPNQRSMHACGILISEEPLTTYS 450

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL--SL 600
            +    +   P+ QF+M   E+ GL KFD L  + +  +  S+  + + +G++VD+    
Sbjct: 451 ALEMPPKG-FPIVQFDMHVAEEIGLEKFDILSQRGIGHINDSVKLIRENQGIEVDIRNPA 509

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
           +  D+ +    L+   T+G F +ES  MR  L  ++ D    ++A  S+ RPG   + ++
Sbjct: 510 LSKDEAQANVYLSQGKTIGCFYIESPAMRGLLRRLKCDNYRTLVAASSIIRPGVAQSGMM 569

Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             Y  R N   +    HP+ +  L ET G+++YQE V+++A    G + ++ D+LRRAM 
Sbjct: 570 REYIFRHNNPGQFEYFHPVFEEHLGETYGIMVYQEDVIRVALYYGGIAEADGDILRRAMS 629

Query: 719 KKIK--EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            K +    + + K+ F++  +K G  + ++  ++  +  FA Y F K+H+A+YAV SYQ+
Sbjct: 630 GKGRSLSALQRVKDNFLASCAKQGHPEDLSREVYRQIESFAGYSFCKAHSASYAVESYQS 689

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            ++K +YP+EF+ A +        + + +  +AR     I+ P VN   V+  +    IY
Sbjct: 690 LYLKVYYPLEFMVAVIN-NQGGFYRTEVYIHEARMSGGNILNPCVNKSKVETSIYGKDIY 748

Query: 837 YSLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                ++ +       I +E   +  +  LEDF  RV    +    LE L+F GA    G
Sbjct: 749 LGFMHLQSLEARIMNEIVVERDRNGEYLDLEDFIKRV---PVGLEALEILIFIGAFRFTG 805

Query: 896 YSRMQLL 902
            S+ +LL
Sbjct: 806 KSKNELL 812


>gi|84502808|ref|ZP_01000921.1| DNA polymerase III, alpha subunit [Oceanicola batsensis HTCC2597]
 gi|84388791|gb|EAQ01661.1| DNA polymerase III, alpha subunit [Oceanicola batsensis HTCC2597]
          Length = 975

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 250/914 (27%), Positives = 418/914 (45%), Gaps = 68/914 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--CAAGIQ 68
           F  +   S+++ L GA      + +       A+AI D N++   +   QKA   A  I+
Sbjct: 2   FSEISATSNFTFLTGASHPEEYMARAEQLGLEAVAIADENSVAGIVRAHQKAREIARAIR 61

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVP--------------SIVLLVSTAEGYQRLIE 114
                +        LK  +    P P  P               I  L  T  G+ RL  
Sbjct: 62  DREAWEATHGPMGPLKPGH--VPPRPKAPRLIPAARLVLSDGMEITALPETRIGWARLCR 119

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEI---GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
           L+SR  L    +     CL  ++++   G E L ++   S    D       +    KR 
Sbjct: 120 LISRGRL----RAPKGDCLLHIEDLLDNGMEALRLVLHPSRAITDP----RGAGDWPKRA 171

Query: 172 LTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
               + FG ++ + L   + G D+ R      +A    +  V +   +          DV
Sbjct: 172 RRLTRRFGGQMSLALTPAYDGQDKARFDTHAAMAADLGIETVTSARPMMHHARRRRLADV 231

Query: 231 LMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
           + A+  S  V    R  +   +  L+  +E+  +      A++ T+ +AR  +F L    
Sbjct: 232 MTAIRTSRTVDALGRDALANGERRLRTGTELRRMLGPHAGAVDRTIRLARSLTFSL---- 287

Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEV-RLAQGAIAKGY--HAQD-YRQRLDFEL 345
                      D+++ E  +E+         + RLA+  +A  Y   A D  +  L+ EL
Sbjct: 288 -----------DELRYEYPSEVSGGETPSTRLARLARKGLAWRYPFGAPDRVKAMLEHEL 336

Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +IA++K+  YFL V D + +A+  +I +  GRGS A SV  Y L +T + P   +++FE
Sbjct: 337 ALIAKLKYEPYFLTVHDVVAFARSRDI-LCQGRGSAANSVVCYCLGVTSVSPEIGTMVFE 395

Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
           RF++  R   PD D+DF  +RR+EVI+++  +YG  R     T    + K A+R+VG A+
Sbjct: 396 RFVSEARDEPPDIDVDFEHERREEVIQHIYERYGRHRAGLCATVIHYRGKRAIREVGAAM 455

Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYR 523
            +    +  L   +           A  +D R RE  L   DP + + + +  ++EG+ R
Sbjct: 456 GLTQDTIGALSSQLWG-----FFAAAGMEDQRMREIGLDPTDPRLRQTMALIHEIEGMPR 510

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
           H S H  G ++ +  L +LVP+      D  V  ++   I+  G++K D L L  LT ++
Sbjct: 511 HLSQHVGGFIMTEGRLDELVPIENATMEDRTVICWDKDDIDTLGILKVDVLALGMLTCIR 570

Query: 584 KSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
           K+ D L +    ++DL+ IP +D E Y +L    T+G+FQ+ES      L  M+P C  D
Sbjct: 571 KAFDLLVRHENTELDLATIPPEDPEVYDMLCKADTIGVFQVESRAQMNFLPRMRPRCFYD 630

Query: 643 IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
           ++  V++ RPGPI  D +  Y  R+NG+E +      +  +L +T GV ++QEQ MQIA 
Sbjct: 631 LVIEVAIIRPGPIQGDMVHPYIRRRNGEETVEFPSDELGQVLGKTLGVPLFQEQAMQIAI 690

Query: 701 LLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
           + +G++  EAD LRR++   K    + + + RF+ G ++NG     A   F  +  F  Y
Sbjct: 691 IGAGFTPEEADRLRRSLATFKKHGNVSEFRSRFMRGMARNGYDADFADRCFSQIEGFGSY 750

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           GF +SHAA++A++ Y ++W+K H+P  F  A +  +        +  +DAR   +++ P 
Sbjct: 751 GFPESHAASFALLVYASSWIKHHHPGIFACALLNSQPMGFYAPAQIVRDARDHGVEVRPV 810

Query: 820 SVNTPCVD--FKVGDNRIYYSLA--AIKGVGTTTARHIMEASADKPFDSLEDFCSRVD-S 874
            +N    D   +    R+   L    IKGVG   A  I  A  +  + S+ D   R   +
Sbjct: 811 DINASHWDNIMEREGARLILRLGFRQIKGVGQEEADWISAARGNG-YHSVGDVWRRAGVA 869

Query: 875 KKLNRRVLESLVFA 888
             L  R+ E+  FA
Sbjct: 870 PALIERLAEADAFA 883


>gi|299069161|emb|CBJ40414.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum CMR15]
          Length = 1075

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 278/1048 (26%), Positives = 462/1048 (44%), Gaps = 99/1048 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA   + ++ +  A    A+A+TD  ++   +     A  AG++
Sbjct: 12   PDYAELHCISNFTFLTGASHPHELVARAQAFGYRALALTDECSVAGTVRAHMAAKEAGLK 71

Query: 69   PIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             IIG +  + D Q    +             +VLL    +GY  L E +++  L    K 
Sbjct: 72   LIIGSRFTVRDAQGEPWL------------RLVLLAQDIDGYGNLCECITQARLAAP-KG 118

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT----FKKLFGDRLY 183
              R+    L       L  L G    P   A          + LL      +++FG+RL 
Sbjct: 119  DYRLLADDLAAPAG-ALAHLRGM---PHCLAILLPDYDPDPRYLLAQAQWCRQVFGERLS 174

Query: 184  VNLQ---RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            + L+   RH   DR+R + V  ++   ++P+VAT +    S +    HDVL A+  S  +
Sbjct: 175  MALELPLRH-ADDRHRGT-VAAVSEQTDVPMVATGDVAMHSRQRKPLHDVLTAIRLSRPI 232

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIE 297
            ++       + +  ++ R ++   +      + L  +VE+A  C F L       P  + 
Sbjct: 233  AECGLALAPSAEQAMRTRMQLAFFYQGERGAQVLRRSVELASLCDFSLDEITYEYPHEVV 292

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E     +     L  + +AG   R  +   AK       R +LD EL +IA +++  +F
Sbjct: 293  PE----GQTPAGYLHAEVMAGAARRYGKAIPAK------VRAQLDEELALIAELRYEPFF 342

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D +++A+  +I +  GRGS A S   Y L IT+++P   + LF RFL+  R   PD
Sbjct: 343  LTVYDVVRFARSQSI-LCQGRGSAANSAVCYCLGITEVNPESGNTLFARFLSRARNEPPD 401

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF   RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL +    ++++ K
Sbjct: 402  IDVDFEHQRREEVIQYIYKKYGLTRTALAAALITYRTRSALRDVGRALGIDLGVIEQVAK 461

Query: 478  LIP-----NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
                    ++ A     Q +  +S         P V R   + ++L G  RH S H  G 
Sbjct: 462  AQAWWDGRHEFAQRAGQQGLDPES---------PLVQRWAGLIEQLRGFPRHLSQHVGGF 512

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--- 589
            VI    LS+LVP+      +  V Q++   +E   L+K D L L  LT ++++LD L   
Sbjct: 513  VIAQGKLSRLVPIENAAMPERRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDLLDAL 572

Query: 590  -AQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
              +R       K+ +  +P +D  TY ++    T+G+FQ+ES   +  L  ++P    D+
Sbjct: 573  PGRRAHYRAPGKLAMQHLPDEDTATYAMICRAETIGVFQIESRAQQSMLPRLRPSTYYDL 632

Query: 644  IALVSLYRPGPIDNIVVY------NNRKNGKEKIVSI-HPLIDPMLKETQGVIIYQEQVM 696
            +  V++ RPGPI   +V+         +NG    V+   P +  +L+ T GV I+QEQVM
Sbjct: 633  VIQVAIVRPGPIQGGMVHPYLQRREAMRNGNPDCVTYPGPEVKAVLERTLGVPIFQEQVM 692

Query: 697  QIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLA 754
            +IA    G++  EAD LRR M   K K  + + + R +    +           +   + 
Sbjct: 693  EIAMKAGGFTADEADRLRRDMAAWKRKGNLTQHQARLMKEMVEVRHYDPAFVEALCRQME 752

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA+YGF +SHAA +A ++Y ++++K H P  F AA +  +        +  Q+AR+  +
Sbjct: 753  GFAEYGFPESHAAGFARLAYVSSFLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSRV 812

Query: 815  QIMPPSVNTPCVDFKV--------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            +++P  V     D  +        G   I   L  I+G+       I+ A A  PF S+E
Sbjct: 813  RVLPADVTASAWDCTLHARPDGAGGQPDIRLGLNRIRGMRPAAGERIVVARAQAPFSSVE 872

Query: 867  DFCSRVDSKKLNRR-VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
            D   R     L+R  +         L   G+ R  L Q+L  +Q+  Q          ++
Sbjct: 873  DLAHRA---ALDRHDLSVLAAANALLSLAGHRRQALWQTL-ALQEPGQ----------DH 918

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                +       + L   S+    V    +   LG     HPL + +P L +M       
Sbjct: 919  ALLRQARPVEAPLVLPAPSLGEEVV---ADYGSLGLSLQSHPLSLLRPRLEQMRFVTAAA 975

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
                  G   R   +V  +Q+  T KG+
Sbjct: 976  LAGYRNGQLARACGIVTVRQRPGTAKGT 1003


>gi|110635592|ref|YP_675800.1| DNA polymerase III, alpha subunit [Mesorhizobium sp. BNC1]
 gi|110286576|gb|ABG64635.1| error-prone DNA polymerase, DnaE-like protein [Chelativorans sp.
           BNC1]
          Length = 1126

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 222/849 (26%), Positives = 393/849 (46%), Gaps = 69/849 (8%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--------- 55
           +  +P++    V S++S L GA     ++         A+ + D N +            
Sbjct: 1   MTAAPAYAEFGVQSNFSFLRGASRPEELVVAAKLLGFSAMGLADRNTVAGVVRAWVQSKY 60

Query: 56  LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
           ++ ++++  A +    GC+L         + + G       P I+      +G+  L  +
Sbjct: 61  IKLTEESEPARLPYHPGCRL---------VFSDG------TPDILAYPQDRQGWAHLCRM 105

Query: 116 VSRMYLLDQGKQSVRICLS---WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
           +++  + ++ ++   + L+   W  E G +  + +      P D+   F         L 
Sbjct: 106 LTKANMREESEKGAPVLLAEDFW--EWGDQISLAILPDLQAPGDKTLAF---------LK 154

Query: 173 TFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             K  F + +++ +   + G DR+R +Q   +A    +PL+ATN+ L+ + E     DVL
Sbjct: 155 AVKARFKESVWLAVAPSYGGDDRWRLAQAAGMAEAVGVPLMATNDVLYHAAEQRSLQDVL 214

Query: 232 MAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            A+  +T +S+         + ++K   EM  +F   PEAL  T+  A   SF L     
Sbjct: 215 TAIRLNTTISEAGFALEANAERHMKPPEEMARLFRSYPEALAETLRFAESLSFSLSELEH 274

Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             P     E  +     + EL      G + R  +G        +  ++ +  EL+++ R
Sbjct: 275 NYP----DEVSESGLPAQEELERLTWEGAKERFPRGI------PEAQKELIRKELDLVKR 324

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
             ++ YFL V D +++A+   I +  GRGS A S+  Y L ITD+ P     L ERF++ 
Sbjct: 325 KNYARYFLTVYDIMRYARSQGI-LCQGRGSAANSLICYCLRITDVGPDIMDHLLERFISE 383

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
           +R   PD D+DF   RR+EVI Y+  KY  +  A   +  S + + ALR+V + L +   
Sbjct: 384 ERGEPPDIDVDFEHQRREEVIAYIYEKYSEKHTALACSVISYRGRLALREVAKVLGLSED 443

Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTH 528
               L   I    +  V       D+  + A L  ADP   +++ ++  + G  RH S H
Sbjct: 444 VTSALSGSIWGWSSEEVG------DTAIKAAGLNKADPRTKQMVNLANGIMGFPRHLSQH 497

Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
             G VI    L ++VP+ +    +  + +++   ++  GL+K D L L  L+ LQ++   
Sbjct: 498 VGGFVITKDRLDEIVPIVKTAMEERKMVEWDKDDLDNVGLLKVDVLALGMLSCLQRAFGL 557

Query: 589 LAQR-------GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
           L ++       G  ++L+ I  +    Y +++   T+G+FQ+ES      L  +QP    
Sbjct: 558 LKEKYDVRDDYGRPLELATIQPELEPVYDMISRADTIGVFQVESRAQMSMLPRLQPRTFY 617

Query: 642 DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
           D++  V++ RPGPI  D +  Y  R+  +EK   + P ++ +LK+T GV ++QEQ M+IA
Sbjct: 618 DLVIEVAIVRPGPIQGDMVHPYLKRRERQEKPEYVRPELEAILKKTLGVPLFQEQAMKIA 677

Query: 700 QLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            +  G+   EAD LRRAM   K    +   K + I+G    G  +  A   F  +  F +
Sbjct: 678 IVAGGFEPWEADRLRRAMATFKRTGTVTDYKHKLINGMEARGYPRAFAERCFRQIEGFGE 737

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           YGF +SHAA++A++ Y +AW K +YP  F AA +  +        +  +DAR+  ++I  
Sbjct: 738 YGFPESHAASFALLVYASAWFKAYYPDVFCAAILNSQPMGFYAPAQLVRDAREHGVEIRE 797

Query: 819 PSVNTPCVD 827
             +N+   D
Sbjct: 798 VDINSSKWD 806


>gi|209551461|ref|YP_002283378.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv.
            trifolii WSM2304]
 gi|209537217|gb|ACI57152.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM2304]
          Length = 1150

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 236/859 (27%), Positives = 397/859 (46%), Gaps = 65/859 (7%)

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVT 249
            G DR   + +  LA  + +PL+ATN  L+   E     DV++A+  H  +V         
Sbjct: 195  GRDRQVFAVLAMLAARNRVPLIATNQPLYHHPERRPLSDVVIAIREHVQIVQAGFLLAPN 254

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + YLK+  EMV IF D P A+ENT     R +F L+      P     E D  +  +E 
Sbjct: 255  AERYLKDSREMVRIFRDYPGAIENTQVFFGRLTFSLKELEHNYP----PENDPGETPQET 310

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L     AG   R  +G  AK        +++D+EL +I    ++ YFL V   I  A+ 
Sbjct: 311  -LERLTRAGAARRYPEGIPAK------VAKQIDYELKLIGDKNYASYFLTVHRIIHHARY 363

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            +   +  GRGS A SV  Y L IT++DP + SLLF+RF++ DR   PD D+DF  DRR+E
Sbjct: 364  DLKVLCQGRGSAANSVICYCLEITEVDPQKSSLLFDRFISMDRDEPPDIDVDFEHDRREE 423

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+++   Y  E         + + ++A R+V +A  +       +  L+       +S 
Sbjct: 424  VIQFIYRNYKREHAGLTAGVTTYRTRSAGREVAKAFGLSEDVQSAISSLVWGWSEDNLSE 483

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +    D++     + DP    +L+ + +L G  RH + H  G VI    L ++VP+ +  
Sbjct: 484  R----DAKAAGLDIKDPVTRNVLKYASELLGFPRHLTQHVGGFVITRDRLDEVVPIMKTA 539

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH-- 606
              D  + +++   ++   ++K D L L  LT L+K    L     VK  L+ +   +H  
Sbjct: 540  MPDRYMIEWDKDDLDNVKILKVDVLALGMLTCLRKGFSLLELHYDVKKTLADLGNREHGD 599

Query: 607  ---ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
                 Y ++    TLG+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y
Sbjct: 600  EGRPVYEMMGRADTLGVFQIESRAQMSMLPRLKPKLFYDLVIEVAIVRPGPIQGDMVHPY 659

Query: 662  NNRKNGKEKIVSI-HPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              R++ + K + I +P   +  +L+ T GV ++QEQ MQIA   +G++ +EAD LRRAM 
Sbjct: 660  LKRRDQRAKNIPIEYPSEELKAVLERTLGVPLFQEQAMQIAITAAGFAPAEADKLRRAMA 719

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K    +   + RFI G +  G ++  A   F  +  F +YGF +SHAA++A++ Y ++
Sbjct: 720  TFKRTGTIGNFETRFIEGMTSKGYAREFAQQCFNQIKGFGEYGFPESHAASFALLVYASS 779

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP------------- 824
            W+K +YP  F AA +  +        +  +DAR+  ++I+P  +N               
Sbjct: 780  WLKAYYPDVFCAAMLNSQPMGFYAPAQLVRDAREHGVKILPVDINESDWDCDLEEAAFDP 839

Query: 825  -CVDFKVGDNR--------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
              VDF+  + R        +      IKGV +     ++  +  K + S+ D   R    
Sbjct: 840  NAVDFRHREMRGIIRARHAVRLGFRQIKGV-SDKEMELLVKNRGKGYGSVRDLWLR---S 895

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLD--NIQKYAQWVEKNRTNKHENIFAHEKGT 933
             L + V+E L  A A      SR   L ++   +++  A+ +      +H ++ A     
Sbjct: 896  GLQKSVIERLADADAFQSLRLSRRDALWAVRALDVKSAAEELPLFEQARHVDLQAEPATK 955

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
              + +  E+            + R L      HP+   +  LR  G+    + +    G 
Sbjct: 956  LPEMLPGEQVI---------EDYRYLSLSLKAHPVSFLREELRHAGVTRNVDLLTVANGR 1006

Query: 994  NIRLAAMVVSKQQKKTRKG 1012
             + +A +V+ +Q+  + KG
Sbjct: 1007 RVTIAGLVLVRQRPGSAKG 1025


>gi|254472134|ref|ZP_05085534.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio
            sp. JE062]
 gi|211958417|gb|EEA93617.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio
            sp. JE062]
          Length = 1117

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 240/879 (27%), Positives = 406/879 (46%), Gaps = 84/879 (9%)

Query: 177  LFGD--RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            +FG   RL V L  +   DR    Q+++LA    L ++A N+ L+         D++  +
Sbjct: 150  VFGQQVRLAVALT-YGASDRRFLLQMMELADACGLNILAVNDVLYHEAARRPLQDIVSCI 208

Query: 235  -AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
              H T+ S   +     + YLK   EM  +F D PEAL  ++ I    +F L        
Sbjct: 209  RLHETLESAGRKLGANAERYLKTYEEMEQLFHDCPEALTESLRILDEINFSLS------- 261

Query: 294  RFIEKECDDIQKE------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
               E   D  Q+E       + EL   A  G ++R  +G        +  R+ + +ELN+
Sbjct: 262  ---ELRYDYPQEEIASGLSPQQELARLAEEGAQIRYPEGV------PESVRESIAYELNL 312

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I  + ++ YFL V D +++A+  NI +  GRGS A SV  + + IT++DP R  LLFERF
Sbjct: 313  IEELDYAPYFLTVHDIVRFARSRNI-LCQGRGSAANSVVCFCIGITEVDPKRAGLLFERF 371

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            ++P+R   PD D+DF  +RR+EVI+Y+  KYG ER     T  + ++++ALR+V +   +
Sbjct: 372  ISPERKEPPDIDVDFEHERREEVIQYIYQKYGRERAGLAATVITYRSRSALREVAKVFGL 431

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS---VDRLLEISQKLEGLYRH 524
                   L   I    +         +  + R+A L DP    V ++L+ +++L G  RH
Sbjct: 432  SEDAAGALSGTIWGRSS------GGGNAEQVRDAGL-DPQEAVVAQVLKYAKELIGFPRH 484

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             S H  G VI    L ++VP+      D    +++   +E  GL+K D L L  LT ++K
Sbjct: 485  LSQHVGGFVITQGRLDEVVPVMNAAMEDRTTIEWDKDDLESLGLLKIDVLALGMLTAIRK 544

Query: 585  SLDFLAQRGVKVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            +L  L ++G   D ++  +P ++ E Y ++    TLG+FQ+ES      L  ++P    D
Sbjct: 545  AL-VLLRKGYNQDWTIASLPEEEAEVYDMICRADTLGVFQIESRAQMSMLPRLRPRSFYD 603

Query: 643  IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            ++  V++ RPGPI  D +  Y  R+  KE +      +  +L +T GV ++QEQ M+IA 
Sbjct: 604  LVIEVAIVRPGPIQGDMVHPYLRRRQKKEAVNFPKEELRDVLGKTLGVPLFQEQAMKIAI 663

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQ-KERFISGASKNGISKTIAVNIFELLAKFADY 759
            + +G++  EAD LRRAM    +    K  +++ ++G    G  K  A   F+ +  F +Y
Sbjct: 664  VAAGFTPGEADRLRRAMATFRRVGTIKTFQDKMVNGMVARGYEKDFAERCFKQIEGFGEY 723

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GF +SHAA++A++ Y + W+K  YP  F AA +  +        +  +DAR+  + +   
Sbjct: 724  GFPESHAASFALLVYASCWLKARYPDVFCAAMLNSQPLGFYAPAQLVRDAREHGVDVREV 783

Query: 820  SVNTPCVDFKV----------------------GDNRIYYSLAAIKGVGTTTARHIMEAS 857
             +N    D  +                       D+ +     ++KG+       ++ A 
Sbjct: 784  DINLSSWDAVLEPDAQAWRRLHPRHKEMQGTIKSDHAVRLGFRSVKGLAEADMEKLV-AV 842

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
              + +DS+ D   R     L+R V+  L  A A    G  R   L +       AQ +E 
Sbjct: 843  RGRGYDSVRDLWLRTG---LSRSVIAKLAEADAFRSLGLDRRAALWA-------AQGLEA 892

Query: 918  NRTNKHENIF----AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
                +   +F     HE     D         E+    +++    L     GHP+   + 
Sbjct: 893  GGAAERLPLFDQANLHELRPEPDVHLPPMLPGEHVMADYQS----LTLSLKGHPVGFVRK 948

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             L +  +   ++      G  + +A +V+ +Q+  + KG
Sbjct: 949  SLAQSCVILCDDLKDLRAGRKVSVAGLVLVRQRPGSAKG 987


>gi|56477171|ref|YP_158760.1| hypothetical protein ebA3077 [Aromatoleum aromaticum EbN1]
 gi|71151812|sp|Q5P4A4|DNAE2_AZOSE RecName: Full=Error-prone DNA polymerase
 gi|56313214|emb|CAI07859.1| similar to DNA polymerase III alpha chain [Aromatoleum aromaticum
            EbN1]
          Length = 1070

 Score =  298 bits (762), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 278/1054 (26%), Positives = 460/1054 (43%), Gaps = 122/1054 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--KACAAGIQ 68
            +  L   +++S   GA     ++ + A     A+AITD  +L   +   Q  +  A  ++
Sbjct: 16   YAELHCLTNFSFQRGASHPEELVARAAEAGYTALAITDECSLAGVVRAHQQLRRLARPLK 75

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +IG +L   + D L+              +VLL +    Y RL  L++   +  +    
Sbjct: 76   LLIGSELR--LVDGLR--------------VVLLATDRAAYGRLARLIT---IGRRAATK 116

Query: 129  VRICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             R  L+    + G  G + L      P DR     +     +      + F D  ++ ++
Sbjct: 117  GRYQLTCADLDRGIPGCLALV---VPPDDRILDAAALVADAR---WVGERFPDAAWLAVE 170

Query: 188  RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
               G D  R  + ++ +A    LP VA   +L          DVL A+     +++  R 
Sbjct: 171  LACGPDDGRRLEALLAIASAAGLPPVAATGALMHDPSRRALADVLAALRLRVTIAEAGRA 230

Query: 247  RVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-----QVHAPILPRFIEKE 299
             + P  +  L  R+ +   +    E L  T+ I  RC F L     +  A ++P   E  
Sbjct: 231  -LAPNAERALHERAVLARRYPA--ELLAETLRIVARCHFRLDELRYEYPAELVPDG-ETP 286

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               +++  E+ LR +           G           R +++ EL +IA + F  YFL 
Sbjct: 287  ASWLRRLVEDGLRWR----------HGRPQDDLAPPKVRAQVEHELALIAELGFEAYFLT 336

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++A+   I +  GRGS A SV  +AL IT++DP    +L ERF++ +R   PD D
Sbjct: 337  VEDLVRFARGRGI-LCQGRGSAANSVICWALGITEVDPELGIMLVERFISKERDEPPDID 395

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EVI+YV  KYG ER A   T    +A++ALRDVGRAL +P  Q++RL +  
Sbjct: 396  VDFEHERREEVIQYVYRKYGRERAALAATVIRYRARSALRDVGRALGLPPGQLERLAR-- 453

Query: 480  PNDPAHPVSLQAIADDSRFREARL-------ADPSVDRLLEISQKLEGLYRHASTHAAGI 532
                      +   D  R R  RL       A P V RL  +++ L G  RH S H  G 
Sbjct: 454  ---------DRFWFDAGRIRPERLREAGFDPASPGVQRLATLTEALVGFPRHLSQHVGGF 504

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
            VI    L +LVP+      +  V Q++   ++  GL+K D L L  L+ L++SL  ++  
Sbjct: 505  VIARGRLDELVPVENAAMPERTVIQWDKDDLDALGLLKIDVLALGMLSALRRSLALVSTW 564

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            RG    L+ IP +  E Y +L+   ++G+FQ+ES      L  ++P    D++  V++ R
Sbjct: 565  RGRPFTLADIPREAPEVYRMLSEADSIGVFQIESRAQMTMLPRLKPARFYDLVVQVAIVR 624

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDP----------------------MLKETQGVI 689
            PGPI   +V+      + +I    P+  P                      +L+ T GV 
Sbjct: 625  PGPIQGGMVHPY-LQARARIERDEPVSYPQPHCPDADADGTCVPRPDDVRRVLERTLGVP 683

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+QEQVMQ+A + +G++  EAD LRRAMG  +   E+++ + + ++G +  G     A  
Sbjct: 684  IFQEQVMQLAVVAAGFTPGEADQLRRAMGAFRRHGELERYRAKLLAGMAARGYRAEFAER 743

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            + + +  F  YGF +SHAA++A++ Y +AW+K   P  FL   +  +        +  QD
Sbjct: 744  LCDQIEGFGSYGFPESHAASFALLVYCSAWLKCCEPAAFLCGLLNSQPMGFYAPSQLIQD 803

Query: 809  ARQFNIQIMPPSVNTPCVDFKV---------GDNRIYYSLAAIKGVGTTTARHIMEASAD 859
            AR+  + ++   V     D  +             +   L  +KG G   A  I+ A  +
Sbjct: 804  ARRHGVVVLGAEVTASDWDCTLEALPDASPGAAPAVRLGLQLVKGFGREAAMRIVAARTE 863

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
            +PF ++++   R        +    L  AGAL+     R Q L           W +   
Sbjct: 864  RPFPNVDELALRARLDAAALK---RLAEAGALEPLAGHRRQAL-----------W-QAAA 908

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
             +  E +    +G    +   E  +   +     +  R LGF    HPL + +  L  + 
Sbjct: 909  GHAPEGVL---RGARIAEPRAELAAPSEAQELVADYAR-LGFTLGRHPLALLRAKLTTLR 964

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
                 E          R+A +V  +Q+  T KG+
Sbjct: 965  FVTAAEIRDYPDRKLARIAGLVTCRQRPGTAKGT 998


>gi|295839717|ref|ZP_06826650.1| DNA polymerase III, alpha subunit [Streptomyces sp. SPB74]
 gi|295827626|gb|EFG65512.1| DNA polymerase III, alpha subunit [Streptomyces sp. SPB74]
          Length = 904

 Score =  298 bits (762), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 257/927 (27%), Positives = 408/927 (44%), Gaps = 99/927 (10%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA- 65
             P F HL+  S  S   GA     +  + A     A+A+TD + +   + F+ KACA  
Sbjct: 8   SGPGFAHLRAVSGNSARYGASHPEALAARAAERGMDAVALTDRDTVAGTVRFA-KACAEH 66

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFP----------TVPSIVLLV-STAEGYQRLIE 114
           G++P+ G  L +D          G               + P    L    A G+  L  
Sbjct: 67  GVRPLFGADLAVDAPAARDARGGGGRRRAPVRGGAFVDESAPRATFLARDGARGWASLCA 126

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LV+  +    G +   + L W    G EGL +L G  S  I RA        A + L  +
Sbjct: 127 LVTAAH---AGGERPPL-LPWDANQG-EGLTVLLGPESD-IGRALAAGRPDRAARLLAPW 180

Query: 175 KKLFGDRLYVNLQRH----RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
           ++ +GD L +    H     G    R  ++ V  A    +  V TN   +         D
Sbjct: 181 RERYGDALRLEAVHHGRDGTGPGSLRLAARTVGFAAEQGIRPVLTNAVRYADPGQGRIAD 240

Query: 230 VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIA 278
           VL A A   V     +   + + +LK+   M      +  A           L +T   A
Sbjct: 241 VLDA-ARRLVPIDPAKGLDSGERWLKDAGRMAREAERITTAAGFGPGAAGALLAHTARTA 299

Query: 279 RRCSF-------ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
             C         +  V  P  PR +       Q+     L ++A AG+ VRL      +G
Sbjct: 300 AECLVDPEDDLGLGSVRFP-EPRLVGAGARTAQRA----LASRAAAGM-VRLGHD---RG 350

Query: 332 YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
             A+ Y +R+  EL++IA   F+ YFL VA  +   +   I V   RGSGAGS+  + + 
Sbjct: 351 PGARAYWERMHHELDIIAHHDFASYFLTVARVVDDVRDLGIRVA-ARGSGAGSLVNHLIG 409

Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
           I   DP+   LL ERFL+  R  +PD DID    RR EV R +  ++G ERVA +    +
Sbjct: 410 IAHADPVEHGLLMERFLSKRRSVLPDIDIDVESARRIEVYRAILGRFGPERVATVAMPET 469

Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR--------L 503
            + + A+RDVG AL +  + +DR+    P+               R R+AR        L
Sbjct: 470 YRVRHAIRDVGAALSLDPADIDRIATAFPH--------------IRARDARTAMDELPEL 515

Query: 504 ADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
           A  + +R       E+ + L+ L R  + H  G+++ D  L    P+       LP+ QF
Sbjct: 516 ASVAAEREKYGTFWELVEGLDALPRGVAMHPCGVLLSDASLLSRTPVVPTSGEALPMAQF 575

Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617
           + + +E  GL+K D LG++  + +  +L  L +  G   D+  IP  D +TY L+ +  T
Sbjct: 576 DKEDVEDLGLLKLDVLGVRMQSAMAHALSELDRATGEAPDIDAIPPGDEKTYQLIRSTET 635

Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIH 675
           LG FQ+ES G R  +  +QP    D++  +SL+RPGP+  D +  +   ++G+  +   H
Sbjct: 636 LGCFQIESPGQRDLVGRLQPSTFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRYPH 695

Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
           P + P L++T GV+++ EQV+ +   ++G    EAD +RR +     +   + +  F   
Sbjct: 696 PDLAPALEDTYGVVVFHEQVIDLVHTMTGCGRDEADRVRRGLSD--PDSQGRIRFWFAQR 753

Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
           A++ G         +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +
Sbjct: 754 AAERGYDAETVTRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHD 813

Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----------GDNRIYYSLAAIKGV 845
                K +    DAR+ ++ I+P  VN      ++              +   LA + G+
Sbjct: 814 PGMYPK-RLLLADARRRDVPILPVDVNHSAPAHRIELVSEEGPPAARWGVRLGLADVHGM 872

Query: 846 GTTTARHIMEASADKPFDSLEDFCSRV 872
                  I  A   +P+ SL DF  R 
Sbjct: 873 SEAEGERIATA---QPYTSLLDFWQRA 896


>gi|260428495|ref|ZP_05782474.1| error-prone DNA polymerase [Citreicella sp. SE45]
 gi|260422987|gb|EEX16238.1| error-prone DNA polymerase [Citreicella sp. SE45]
          Length = 1113

 Score =  297 bits (761), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 281/1045 (26%), Positives = 452/1045 (43%), Gaps = 96/1045 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSALEFSQKAC 63
             +  L V S+++ L GA     ++ +       AIAITD N L      +SAL+  ++  
Sbjct: 13   GYAELCVTSNFTFLTGASHPEELVLRATELGLSAIAITDRNTLAGVVRAWSALKTLREDA 72

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI---------- 113
               ++ +  C       D       G+     VP+  LL     G +  +          
Sbjct: 73   QEALR-VRSCH----QTDPCSRQEVGQPQDLAVPAAELLPRLITGARLALMDDPVEWVAL 127

Query: 114  -------ELVSRMYLLDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSS 164
                   E +SR+  L + +     C   L ++ T  +G+I++          A      
Sbjct: 128  PTDRAAYERLSRLLTLGKRRAEKGRCELTLADLETHAKGMILI----------ALPTRDL 177

Query: 165  QVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEE 223
              A + L   ++ F   +++    R+ G D+       +LA     P+VA  + L     
Sbjct: 178  ARAARPLQRLQRRFPGSVFLGATPRYDGSDQAWFDACAKLALRMNTPMVAAGDVLMHRAA 237

Query: 224  DYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
              +  DVL  +    T+ +   R +   +  LK   +M  ++   P AL  T+EIA RC+
Sbjct: 238  RRQLADVLTCLREGCTIDAIGTRAQPNAERRLKGAPDMARLYRRHPAALRRTLEIAARCA 297

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
            F L   +   P     +  D  +  +  L   A  GL  R   G   K       +  + 
Sbjct: 298  FDLSELSYDYP-----DEHDGHEAPQQRLTRLAHEGLARRYPGGVPDK------VQILMS 346

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             EL V+  + F+ YFL V D + +A+   I +  GRGS A SV  Y L ITD+ P    +
Sbjct: 347  KELRVVGELGFAAYFLTVHDIVVFARGRGI-LCQGRGSAANSVLCYLLGITDVSPDLIGM 405

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            +FERF++  R   PD D+DF  +RR+EVI+++  KYG  R     T    + +AA+R+VG
Sbjct: 406  VFERFISRYRGEPPDIDVDFEHERREEVIQWIYEKYGRHRAGLCATVIHFRTRAAIREVG 465

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE---ISQKLE 519
            + + +       L   I    AH       AD  R RE  L DP   RL +   +  ++ 
Sbjct: 466  KVMGLSQDVTAALSGQIWGQ-AH-----GGADPERIRELGL-DPQDRRLAQTIGLIGEII 518

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G  RH S H  G +I    L +L P+         V +++   I+  G++K D L L  L
Sbjct: 519  GFPRHLSQHVGGFIITAGRLDELCPIENAAMEGRTVIEWDKDDIDALGILKVDVLSLGML 578

Query: 580  TLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T ++KS   L +  G+   L  +P +D  TY +L     +G+FQ+ES      L  MQP 
Sbjct: 579  TCIRKSFALLESHEGISHTLDSVPQEDRATYRMLQRADAVGVFQVESRAQMNFLPRMQPK 638

Query: 639  CIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
               D++  V++ RPGPI   +V  Y  R+  +EK     P +  +  +T GV ++QEQ M
Sbjct: 639  TFYDLVIEVAIVRPGPIQGGMVQPYIRRRQQQEKPEPFGPALHEVTAKTLGVPLFQEQAM 698

Query: 697  QIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            QIA + +GY+  EAD LRR++   +    + + ++RFI G  +NG     A   F  +  
Sbjct: 699  QIAVVGAGYTAEEADRLRRSLASFRRMGTIGEHRDRFIRGMLRNGYDLDAAQRCFTQIEG 758

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FADYGF +SHAAA+A+++Y ++W+K H+P  F  A +  +        +  +D R+  I+
Sbjct: 759  FADYGFPESHAAAFAMLTYVSSWLKCHHPAIFGCALLNSQPMGFYAPAQIVRDMREHGIE 818

Query: 816  IMPPSVNTPCVDF---KVGDNRIYYSLA--AIKGVGTTTARHIMEASADKPFDSLEDFCS 870
            + P  VN    D    +  D R+   L    IKG     A  I  A  +  +   E    
Sbjct: 819  VRPICVNHSQWDNVLERRADGRLALRLGFRQIKGFREEDAGWIAAARGNG-YPDPESLWL 877

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            R     L   VLE L  A A    G +R   L  +  I+  A             +FA  
Sbjct: 878  RA---GLLPSVLERLAEADAFAGMGLTRRDALWQVKAIRAPAPL----------PLFADP 924

Query: 931  ---KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +G     + L    +    V    +   +      HP+++ +P +   GI  + E V
Sbjct: 925  LDGEGLREPDVVLPPMHLGEEVV---EDYVAMRLSLRAHPMELLRPDID--GIVPHSELV 979

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKG 1012
                G ++ +  +V+++Q+  T  G
Sbjct: 980  TAPLG-HVAVCGLVITRQRPGTASG 1003


>gi|220917436|ref|YP_002492740.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|254777924|sp|B8JAF5|DNAE2_ANAD2 RecName: Full=Error-prone DNA polymerase
 gi|219955290|gb|ACL65674.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 1142

 Score =  297 bits (760), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 183/573 (31%), Positives = 298/573 (52%), Gaps = 42/573 (7%)

Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
           G   +D  ++L  EL+++  + ++ YFL V D +++A+   I +  GRGS A S   Y L
Sbjct: 385 GEPPEDVARQLARELDLVESLGYASYFLTVWDVVRFARSRGI-LCQGRGSAANSAVCYVL 443

Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
            IT IDP+R  LLFERF++ +R   PD D+DF  +RR+EV++YV  +YG +R   +    
Sbjct: 444 GITSIDPVRMGLLFERFISAERGEPPDIDVDFEHERREEVLQYVYQRYGRDRAGMVCEVI 503

Query: 451 SLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DPAHPVSL-QAIADDSRFREARLAD 505
           + + K+ALRDVG+AL +   QVDRL KLI          P  L QA  D +     R+  
Sbjct: 504 TYRGKSALRDVGKALGLSLGQVDRLAKLIGTYEDLGQVGPELLAQAGLDAADSERVRMT- 562

Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
                 L ++++L+G  RH S H  G VI  RPL + VP+         + Q++   + +
Sbjct: 563 ------LALARELQGFPRHLSIHVGGFVITRRPLCETVPIEPAAMPGRTIVQWDKDDLSE 616

Query: 566 AGLIKFDFLGLKTLT-LLQKSLDFLAQRGVKVD---------LSLIPFDDHETYHLLTTK 615
             L+K D LGL  LT L +        R              L+ IP +D E Y +L   
Sbjct: 617 LDLLKVDLLGLGMLTALSRALALLARHRPAPASPTAVPHPDALATIPAEDPEVYEMLGRA 676

Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS 673
            ++G+FQ+ES         ++P    D++  V++ RPGPI   ++  Y  R++GKE++  
Sbjct: 677 DSIGVFQVESRAQMSLAPRLRPRNFYDLVISVAIIRPGPIQGGMIHPYLRRRDGKEQVRY 736

Query: 674 IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERF 732
            +  ++P+L  T GV ++QEQ M++A + +G++  EAD LRR M  ++  E++   K R 
Sbjct: 737 PYAPLEPVLARTLGVPLFQEQAMRLAVIAAGFTPGEADELRRVMTHRRSHEKLAAMKARL 796

Query: 733 ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
           ++G ++ GIS   A  IF+ L  FA YGF +SHAA++A++ Y +AW+K ++P  F  A +
Sbjct: 797 VAGMAERGISGADAEEIFKQLLGFAGYGFPESHAASFALLVYASAWLKRYHPAAFACALL 856

Query: 793 TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------------GDNRIY-YS 838
             +           +DA++  +++    V+  C  ++              G+  +    
Sbjct: 857 NSQPMGFYAPHTLVEDAKRHGVEVR--GVDVGCSGWESSLEGAAPGRPAAPGETAVLRVG 914

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
           L A++G+       I+EA A  PF S+ +   R
Sbjct: 915 LHAVRGLPRAVGEAILEARAAGPFGSVAELVRR 947



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 122/308 (39%), Gaps = 42/308 (13%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +  +P +  L+  S +S LEGA     ++ + A     A+A+ D N L+  +    +A  
Sbjct: 1   MSHAPRYAELRCKSCFSFLEGASHPEELVGRAAELGLSALALADVNGLYGIVRAHAEAKR 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD- 123
            G+  I+G +L +           G  P      +VLL    EGY  L  LV+R +  + 
Sbjct: 61  QGLPLIVGAELVV----------AGLAPGRPA-RLVLLAQDREGYAGLCRLVTRAHCGEG 109

Query: 124 -------QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
                  + + +V +    +   G  GL  L  G+ G                 +   K 
Sbjct: 110 WTGAPERRERDAVAVPFEAVA-AGARGLFALYPGADG---------------DAVARLKD 153

Query: 177 LFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG R  + + RHR   +  R            +P+  TN+    +       DVL  V 
Sbjct: 154 AFGRRAALAVTRHRVAGEEARVLAARSAGRRLGVPVAVTNDVHTHARARQVLQDVLTCVR 213

Query: 236 HSTVVSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ---VHAP 290
           H T V +  R R+ P  +  LK   E+  ++SD PE L    +IA +C F ++      P
Sbjct: 214 HGTTVDRAGR-RLFPNAERTLKGPEELARLWSDFPEGLAAAADIADQCRFRMEEIRGEHP 272

Query: 291 ILPRFIEK 298
           + P  +E+
Sbjct: 273 LPPVVVER 280


>gi|330752736|emb|CBL88199.1| DNA polymerase III subunit alpha [uncultured Leeuwenhoekiella sp.]
          Length = 1013

 Score =  297 bits (760), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 241/917 (26%), Positives = 424/917 (46%), Gaps = 124/917 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+ +SL  G LS   +LD   A+ Q +IA+TD NN  + L+F  KA    I+P+IG 
Sbjct: 3   LNCHTYFSLRYGTLSEEELLDLALANNQSSIALTDINNTSACLKFISKARDKNIKPVIG- 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
              +D ++ ++               ++L     G+  + + +S+               
Sbjct: 62  ---VDFRNGIQQC------------YIMLAKNNSGFLAINDFLSKF-------------- 92

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA--EKRLLTFKKLFGDRLYV-----NL 186
                        L   ++ P D     N   +   EK L   K  F +  Y+     +L
Sbjct: 93  -------------LHDKTAFPDDAPVLENVITIYSFEKALELDKNNFEENEYIGIGIKDL 139

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            + R + RY           +E  LV      F +++DY  H +L A+  + ++S+  + 
Sbjct: 140 NKLR-FSRYS---------NYEKKLVLLQPVSFRNKKDYNIHRLLRAIDTNQLLSKLPKE 189

Query: 247 -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK----ECD 301
            +  P+  + +   ++S F + P  L+N++EI   C+          P+ ++K    E  
Sbjct: 190 EQADPEEKMLSPDLLISAFKEYPFILKNSIEILNGCTIHFDFSKSRKPQNLKKVFSSEEL 249

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLI 359
           D QK  E              L +  + K Y       ++RL  EL++I    +  +FLI
Sbjct: 250 DFQKLNE--------------LCKEGLKKRYTIITPQIKERLQKELSLIKSQDYVSFFLI 295

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
               I++A+  N     GRGSGA S+ AY L ITD+DP+   L FERF+N  R S PDFD
Sbjct: 296 NWKIIEYARSKNY-FYVGRGSGANSIVAYLLGITDVDPIELDLYFERFMNEFRSSPPDFD 354

Query: 420 IDFCQDRRDEVIRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           IDF    R+++  ++ N++G + +VA + ++ + Q   A+R++G+   +P  ++D+L K 
Sbjct: 355 IDFSTWDREDITSFIFNEFGKNNQVALLGSYVTFQHSGAVRELGKVFGLPKYEIDKLSK- 413

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                              F   +L D +   +L+ S  L+G   + S HAAGI+I ++ 
Sbjct: 414 -----------------GSFIGNKLDDIA-KLILKYSSYLDGKPNYLSIHAAGILISEKS 455

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
           +      +   + + P  QF+M   E  GL KFD LG + L  ++ SL+ + +    + L
Sbjct: 456 IHYFSATHLPPK-NFPTVQFDMHIAEDVGLYKFDILGQRGLGKIKDSLEIIKKNQPHIKL 514

Query: 599 SLIPFDDHET---YH------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                D HET   +H      +++    +G F +ES  MR  L+ ++ +    ++A  S+
Sbjct: 515 P----DIHETKQFFHDPLINKMISEADCVGCFYVESPAMRMLLKKLRVNDYITLVAASSI 570

Query: 650 YRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            RPG   + ++  Y  R   K++    HP++  ++ +T G+++YQE V+++A   +   L
Sbjct: 571 IRPGVAKSGMMREYIIRHRDKKRCEDAHPILLQIMPDTYGIMVYQEDVIKVAHHYAKLDL 630

Query: 708 SEADVLRRAMGKKI--KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            EADVLRR M  K   ++E    K +FI+   +NG    +   ++  +  FA Y F K H
Sbjct: 631 GEADVLRRGMSGKYRSRQEFQDVKNKFINNCIQNGEKIEVVNEVWRQIESFAGYAFAKGH 690

Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
           +A+YAV SYQ+ ++K ++P+E++ A++          + +  +AR+    I  P +N   
Sbjct: 691 SASYAVESYQSLYLKCYFPLEYMVATIN-NGGGFYTTETYIHEARKKGATIEAPCINRSN 749

Query: 826 VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           ++  + +  IY     ++ +  TT   I+       + SL DF  R++   +    L+ L
Sbjct: 750 IETTINNKTIYLGFQHLENLEKTTMVKIINERICGNYKSLTDFTERIN---IQIEQLDIL 806

Query: 886 VFAGALDCFGYSRMQLL 902
           +   AL  FG  +  LL
Sbjct: 807 IRIDALRIFGKDKRTLL 823


>gi|119386996|ref|YP_918051.1| DNA polymerase III, alpha subunit [Paracoccus denitrificans PD1222]
 gi|119377591|gb|ABL72355.1| error-prone DNA polymerase, DnaE-like protein [Paracoccus
           denitrificans PD1222]
          Length = 1077

 Score =  297 bits (760), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 248/884 (28%), Positives = 401/884 (45%), Gaps = 70/884 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +V L V S++S L GA     +          A+ I D N+L   +     A    ++P+
Sbjct: 24  YVELAVTSAFSFLHGASHPRELALAAHLMGYDALGIADLNSLAGVVRLHATAKKLHLRPV 83

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS--RMYLLDQGKQS 128
           IG +  I + D         T F   P+          Y RL  L++  R + L    Q 
Sbjct: 84  IGAR--IVLADG--------TAFLAYPT------DRAAYGRLASLITKGRRHDLAGNWQK 127

Query: 129 VRICLSWLQEIGTEG----LIMLTGGSSGPI-DRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
              C   L ++ T      LI L G    P+ D A           RL     +    LY
Sbjct: 128 KGRCDLNLADLATHAQGMRLIWLPGDDLSPLPDLAL----------RLPQLSHVAASWLY 177

Query: 184 VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                 RG DR R +++ + A    L +VA N+  + + +     DV+  +   T +++ 
Sbjct: 178 ------RGDDRARINRLDRAAQAAGLSIVAVNDVHYHAPDRRPLQDVMTCIREGTTIARA 231

Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                   + +LK  +EMV +F+D P A+  T EIA  C F L       PR    E   
Sbjct: 232 GLLLAQNAERHLKPPAEMVRLFADWPHAIRATREIADSCRFSLDELQYEYPR----ESVP 287

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                +  L N    G + R   G   K       R  L  EL +I   K + YFL + D
Sbjct: 288 PGLTPQQHLENLTWQGADWRYPAGVPDK------VRATLIKELALIREKKIAQYFLTIHD 341

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +++A+   I +  GRGS A S   Y L IT +DP +  LLFERF++ +R   PD D+DF
Sbjct: 342 IVRFAEDRAI-LHQGRGSAANSAVCYVLGITPVDPAKHELLFERFISQNRKEPPDIDVDF 400

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
             +RR+EVI+++ ++Y  +R     T    + ++A+R+VG+ + +       L   +   
Sbjct: 401 EHERREEVIQHIYDRYRRDRAGLCATVIHYRPRSAIREVGKVMGLSEDVTSALADTVWGS 460

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               +S    A D+      L DP + R + +++++ G+ RH S H  G V+ + PLS+ 
Sbjct: 461 WGKDMS----AADTMQAGLDLGDPLLRRTVRLAEEMIGMPRHLSQHVGGFVLTEGPLSET 516

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLI 601
           VP+      D    +++   I++  ++K D L L  LT ++K    + A  G  + LS  
Sbjct: 517 VPIGNAAMPDRSFIEWDKDDIDELHILKVDVLALGMLTCIRKCFALIKAHYGKVLTLSDF 576

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
             DD  TY +L    ++G FQ+ES      L  ++P    D++  V++ RPGPI   +V 
Sbjct: 577 DHDDQPTYKMLQRGDSIGTFQVESRAQMAMLPRLKPKRFYDLVIQVAIVRPGPIQGNMVH 636

Query: 661 -YNNRKNGKEKIVSIHPLI-DP-----MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            Y  R+ G E +    P   DP     +L  T+GV I+QEQ M+IA + + ++ +E D L
Sbjct: 637 PYLRRRAGLETVDFPGPRDGDPDELKNILFRTEGVPIFQEQAMKIAMVAAEFTPNEVDDL 696

Query: 714 RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           R+AM   + +  + + ++R +    + G ++  A   F  +  F DYGF +SHAAA+A +
Sbjct: 697 RKAMATFRSRGTIGQLQDRMVGKMVERGYTRDFAERCFNQIKGFGDYGFPESHAAAFAHL 756

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-- 830
           +Y +AW+K H+P  F AA +  +        +  +DAR   + ++P  VN    D  +  
Sbjct: 757 AYVSAWLKCHHPAAFAAALLNSQPMGFYAPAQIVRDARDHGVTVLPADVNISEWDNTLEP 816

Query: 831 --GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             G   +   L  I G+    A  I +A   +P+  L D  +R 
Sbjct: 817 CDGTFALRLGLRQIDGLPEALAERIKQAR-HEPYADLADLKTRA 859


>gi|300311573|ref|YP_003775665.1| DNA polymerase III subunit alpha [Herbaspirillum seropedicae SmR1]
 gi|300074358|gb|ADJ63757.1| DNA polymerase III, alpha subunit protein [Herbaspirillum
           seropedicae SmR1]
          Length = 942

 Score =  297 bits (760), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 266/924 (28%), Positives = 422/924 (45%), Gaps = 114/924 (12%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L+GA   + ++ +  A    A+AITD   L   +    +A AA  +
Sbjct: 6   PEYAELYCRSNFSFLQGASHAHELVQRAIALDYRALAITDECTLAGVV----RAYAAWKE 61

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPF------PTVPSIVLLVSTA----EGYQRLIELVSR 118
                Q D     + K+       F      P  P   L +       EGY  L EL++ 
Sbjct: 62  -----QFDKGRTQDFKLIIGSCFRFTGLEDEPAHPLAALTLVALARNREGYGNLSELITL 116

Query: 119 M--------YLLD-QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
                    YLL  +        LS L+ +    LI++      P D        +  + 
Sbjct: 117 ARTRAAKGSYLLHPEDLSGPPPALSHLRALPDCQLILV---PDYPAD-------EETLDA 166

Query: 170 RLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
           +L  F  L   R +V + R +R  D    + +      H LPL A  +            
Sbjct: 167 QLRWFAPLAPGRSWVGITRLYRPLDDLHRAALEAATRRHGLPLAAVGDVQMHQRSRKYLQ 226

Query: 229 DVLMAVAHSTVVSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
           DV+ A+     V +     + P  + +L++R  +  + +  P  L  T+ IA  C F L 
Sbjct: 227 DVVTAIRLGQPVQECGHA-LAPNAEQHLRSRVRLGMVHT--PATLAQTLAIAADCRFSLA 283

Query: 287 VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                 P     E   +     + LR + +AG   R  QG +  G      R++++ EL 
Sbjct: 284 ELRYEYP----DELVPLGMSAADYLRQQTLAGAAKRYPQG-LPGGV-----REQIEAELA 333

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
           +IA+ ++  YFL V D +Q+A+   I +  GRGS A S   Y L +T++DP    LLF R
Sbjct: 334 LIAQKEYEAYFLTVYDLVQFARSRGI-LCQGRGSAANSAVCYCLGVTEVDPTSTRLLFAR 392

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           F++  R   PD D+DF   RR+EVI+++  KYG  R A      S + + ALR+VG+AL 
Sbjct: 393 FISEKREEPPDIDVDFEHQRREEVIQHIYRKYGRRRAALAAAVHSYRPRGALREVGKALG 452

Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADD-----SRFREARLADPSVDRL---LEISQKL 518
           +  + VD + K            Q   D      +RF EA L DP + ++     I+ KL
Sbjct: 453 VDAAIVDAVAK-----------SQHWFDSREELLARFAEAGL-DPELPQIGLWASITGKL 500

Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
               RH S H  G VI    LS+LVP+      +  V +++   +E   L+K D L L  
Sbjct: 501 LRFPRHLSQHTGGFVIARGQLSRLVPIQNAAMPERCVIEWDKDDLESLKLLKVDVLALGM 560

Query: 579 LTLLQKSLDFLA-QRGVK--VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
           LT L+++L+ ++ +RG+   + +  IP +D  T+ ++    T+G+FQ+ES      L  M
Sbjct: 561 LTALRRTLELVSLRRGLPEVMQMHAIPREDPATFEMICKADTIGVFQIESRAQMSMLPRM 620

Query: 636 QPDCIEDIIALVSLYRPGPIDNIVVY-------------------NNRKNGKEKIVSIHP 676
           QP    D++  V++ RPGPI   +V+                   N  K+GK K V    
Sbjct: 621 QPRTQYDLVVQVAIVRPGPIQGGMVHPYLRRRELVREGGSFDYPDNTSKSGKIKKV---- 676

Query: 677 LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISG 735
                L+ T G+ I+QEQVM +A   +GYS SEAD LRR+M   K K  M    ER + G
Sbjct: 677 -----LERTLGIPIFQEQVMDVAIEAAGYSPSEADDLRRSMAAWKRKGGMGPHYERLVLG 731

Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            + NG S+  A +IF+ +  F +YGF +SHAA++A+++Y ++W+K H P  FL   +  +
Sbjct: 732 MTDNGYSREFAESIFKQIEGFGEYGFPESHAASFALLTYFSSWLKCHEPEAFLCGLLNSQ 791

Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSV------NTPCVDFKVGDN-RIYYSLAAIKGVGTT 848
                   +  QDAR+  +Q++P +V      +T  +    G    +   L+ ++ +   
Sbjct: 792 PMGFYSPSQLIQDARRHGVQVLPANVVRSRWESTLELPSSAGARPAVRLGLSLLRSMPAE 851

Query: 849 TARHIMEASADKPFDSLEDFCSRV 872
            A+ I +A A +PF  ++D   R 
Sbjct: 852 AAQRIEQARAQRPFADVDDLARRA 875


>gi|313674487|ref|YP_004052483.1| DNA polymerase iii, alpha subunit [Marivirga tractuosa DSM 4126]
 gi|312941185|gb|ADR20375.1| DNA polymerase III, alpha subunit [Marivirga tractuosa DSM 4126]
          Length = 1041

 Score =  297 bits (760), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 240/911 (26%), Positives = 411/911 (45%), Gaps = 118/911 (12%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           ++L  HS YSL  G LS+  ++++   +   ++A+TD N+     EF+ K   AGI+P+ 
Sbjct: 1   MYLNCHSFYSLRYGTLSVEALVNQAVLNGVESLALTDINSTTGVTEFASKCVEAGIKPLA 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE---GYQRLIELVSRMYLLD----- 123
           G  ++I   D L                 L V+ A+   G++ + EL+++  L +     
Sbjct: 61  G--VEIRKNDTL-----------------LYVAIAQDLAGFREINELLTKTNLSEMPLPL 101

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
           Q      +C+ +                          N  Q+ +K             Y
Sbjct: 102 QSPHFNHVCVIYPTH-----------------------NVPQILQKHE-----------Y 127

Query: 184 VNLQRHRGYDRYRESQVVQLAYTHEL-PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           + +       R  E +  + A+ H+   LV      F +++++  H +L  +  + ++S 
Sbjct: 128 IGI-------RPAELKRYKPAFAHKADKLVCLYPVTFSTKQEFNLHKLLRCIDENILLSH 180

Query: 243 -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC- 300
            K+  +     ++    E+  ++ D P  + NT  +  +CSF     +P       K+C 
Sbjct: 181 LKENQQAAKGEFMIPIKELKLLYKDYPHIIRNTELLFDQCSFAFDFKSPK-----NKKCY 235

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                E++  L   A+ G + R +    A        +QRL  EL +I +M+F  YFL  
Sbjct: 236 TSSYYEDKILLETLALEGFKDRFSANNKAA-------KQRLYDELEIIHKMQFGCYFLTT 288

Query: 361 ADFIQWA-KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            D I+ +  K    VG  RGSGA S+ AY L IT++DPL  +L F RFLN  R S PDFD
Sbjct: 289 WDIIRHSLSKGYFHVG--RGSGANSLVAYCLKITEVDPLELNLYFARFLNNKRTSPPDFD 346

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           ID+    RD++I Y+  ++G E      T    + ++ +R++G+   +P  ++D+L +  
Sbjct: 347 IDWSWTDRDDIIDYIFKRFGREHTGFCGTVTDFKHRSTVRELGKVFGLPKEELDQLSRTS 406

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
           P+                      +D  V  +    + L G     S H+ GI I + P+
Sbjct: 407 PDHLP-------------------SDNLVKNIQHYGKMLSGFPNQLSMHSCGIYITEEPI 447

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
           +    M       +P  + +M   E   L K D L  + L  ++++++ + + +G+ +D+
Sbjct: 448 ANYTAM-NIYPKGVPTCEIDMYMAEAFHLEKIDILSQRGLGHIKEAVEIVKENKGIDIDI 506

Query: 599 SLIPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
           +       D +   LL T  TLG F +ES  MR  L  ++ +  E ++A  S+ RPG   
Sbjct: 507 ADTKSFKKDEKCNELLRTGKTLGCFYIESPAMRGLLRRLKCNSYETLVAASSIIRPGVAQ 566

Query: 657 NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
           + ++  Y  R     +I   HP+ +  LK+T GV++YQE V++IA   +   L++ADVLR
Sbjct: 567 SGMMREYVERHRDPSRIKYFHPVFEEQLKDTYGVMVYQEDVIKIAHHFAKLDLNDADVLR 626

Query: 715 RAMGKKIKE--EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           R M  K +   EMDK K +F S  +  G  K +   ++  +A FA Y F KSH+A+YAV 
Sbjct: 627 RGMSGKSRSQREMDKVKNQFFSNCAALGYPKEMVEEVYRQIASFAGYSFCKSHSASYAVE 686

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
           SYQ+ ++K +YP+EF+ A +        + + +  +AR     I  P VN    +  + +
Sbjct: 687 SYQSLFLKAYYPLEFITAVIN-NNGGFYRPEVYINEARMLGAHIEAPDVNYSYANASLKE 745

Query: 833 NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             I+  L  +  +       I+        F SL D   R D   LN   +   ++ GAL
Sbjct: 746 TTIHLGLDQVMHLSKRGIESIVNTREKTGTFSSLSDLLDRTD---LNFDDVSYAIYTGAL 802

Query: 892 DCFGYSRMQLL 902
                S+ QL+
Sbjct: 803 RSISRSKGQLI 813


>gi|149191860|ref|ZP_01870095.1| putative DNA polymerase III alpha chain [Vibrio shilonii AK1]
 gi|148834295|gb|EDL51297.1| putative DNA polymerase III alpha chain [Vibrio shilonii AK1]
          Length = 1023

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 264/973 (27%), Positives = 440/973 (45%), Gaps = 107/973 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL--EFSQKACAAGIQ 68
           +  L   S++S L GA     ++ +    Q  AIAITD  ++  A+    + K     ++
Sbjct: 3   YAELFCQSNFSFLTGASHAEELVLQAEFLQYSAIAITDECSIAGAVRAHTAIKQHGLSLK 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM--------Y 120
            I+G    ++ +                   +LL  T E Y  L  +++          Y
Sbjct: 63  QIVGSMFWLNDECQF----------------ILLSPTREAYAELCRIITNARRRCEKGDY 106

Query: 121 LLDQGK-QSVRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
            L +    S+R CL  WL                 P  R      S V   R L   +  
Sbjct: 107 QLSEWDIMSLRHCLILWL-----------------PTGR-----ESDVRWGRWLV--QYH 142

Query: 179 GDRLYVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             RL++ LQRH   + +R  Q  + L+   +LP+ A    L  +         L A+  +
Sbjct: 143 HQRLWIGLQRHLTSNEHRYIQHCETLSVDLQLPITACGGVLMHTATRLPLQHTLTAIKLN 202

Query: 238 TVVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
           T + +      V  +  L+ ++++  ++    E L  +V IA  C F L       P   
Sbjct: 203 TSIEKVCSHLLVNTERSLRPKTKLEKLYRS--EWLNESVYIASLCEFKLSKLRYEYP--- 257

Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
             E     K     LR     G   R  +G  +   H +   Q ++ EL +I  + +  +
Sbjct: 258 -SELIPNGKTPMGYLRELVERGKAQRFPEGLPS---HVE---QTINKELALIEELDYPFF 310

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
           FL + D + +AK+  I +  GRGS A S+  Y L IT +DP + S+LFERF++ +R   P
Sbjct: 311 FLTIHDIVMFAKQQGI-LYQGRGSAANSIVCYCLEITAVDPRQISVLFERFISKERNEPP 369

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           D D+DF  +RR+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  +Q+D   
Sbjct: 370 DIDVDFEHERREEVIQYIYQKYGRERAALAATVISYRFKSAVRDVGKALGVSDTQLDYFI 429

Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSV-------DRLLEISQKLEGLYRHASTHA 529
           K I              D S+  +A+L +  +        + +E+  ++ G  RH S H 
Sbjct: 430 KNINRR-----------DRSQGWQAQLVELGLKPDSLKGQQFIELVNEITGFPRHLSQHV 478

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G VI   PL +LVP+     ++  V Q++   +E  GL+K D L L  LT ++K    +
Sbjct: 479 GGFVISSGPLYELVPVENAAMAERTVIQWDKDDLESLGLLKVDVLALGMLTAIRKCFQLI 538

Query: 590 AQR-GVKVDLSLIPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            +  G  + ++ I    DD   Y ++    T+G+FQ+ES      L  ++P    D++  
Sbjct: 539 NKHYGRTLTIADITRRQDDPNVYAMIQRADTIGVFQIESRAQMSMLPRLKPATYYDLVIQ 598

Query: 647 VSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
           +++ RPGPI   +V+    R+NG+E I      ++ +L  T GV I+QEQV+++A + +G
Sbjct: 599 IAIVRPGPIQGDMVHPFLKRRNGEEAISYPSKEVESVLSRTLGVPIFQEQVIKLAMVAAG 658

Query: 705 YSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
           ++  EAD LRRAM   K   ++ K + + I G    G     A  +FE +  F +YGF +
Sbjct: 659 FTGGEADQLRRAMAAWKKNGDLFKFRSKLIQGMQAKGYETEFAERLFEQICGFGEYGFPE 718

Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
           SH+A++AV++Y +AW+K +YP  F  A +           +  QDA++ ++ I P  VN 
Sbjct: 719 SHSASFAVLAYCSAWLKHYYPDAFYTALLNSLPMGFYSSSQLLQDAKRHHVSIAPVCVNY 778

Query: 824 PCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                 +        +      + G+  ++ + +++    + F +     +++    LNR
Sbjct: 779 SQYHHYLRSTPQGLVLQLGFRQVNGLSESSMQRLLQHRPREGFTT----ATQIKQLGLNR 834

Query: 880 RVLESLVFAGALDCF-GYSRMQLLQSLDNIQKYAQW-VEKNRTNKHENIFAHEKGTFSDK 937
           R LE L  A AL    G+        +DN+Q    +  EK+     ++   H+     D 
Sbjct: 835 RELEILASANALKAISGHRYATRWAMMDNLQDLPLFKAEKS----DDSSLPHQPSPIED- 889

Query: 938 ITLEKFSVENSSV 950
             LE FS  N S+
Sbjct: 890 -MLEDFSAMNVSL 901


>gi|221067247|ref|ZP_03543352.1| DNA polymerase III, alpha subunit [Comamonas testosteroni KF-1]
 gi|220712270|gb|EED67638.1| DNA polymerase III, alpha subunit [Comamonas testosteroni KF-1]
          Length = 1136

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 293/1088 (26%), Positives = 470/1088 (43%), Gaps = 156/1088 (14%)

Query: 3    QYLEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            Q + + P ++  L   S +S L GA S   ++ +  +    A+A+TD  ++  A+   + 
Sbjct: 31   QGMGRGPLAYAELHSLSHFSFLRGASSPAELVHRAKSLGYAALALTDECSVAGAVRAFEA 90

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRM- 119
            A   G+  I G +                  F   P  IV+LV    G+  L E ++   
Sbjct: 91   ARDCGLHLIHGSE------------------FAWGPLRIVVLVRDLLGWGNLCEFITTAR 132

Query: 120  -------YLLDQGKQSVRICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
                   YL+D+          W L   G E L++      G +D +     +   E   
Sbjct: 133  SRAAKGEYLVDESS-------PWQLLNQGCECLLL---PQRGKLDASDLIAVTACLES-- 180

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH-ELPLVATNNSLFLSEEDYEAHDV 230
                 L  + L++ ++ H   D     Q +Q A     L L+A  +    +       DV
Sbjct: 181  -ASGYLDAENLWLGVELHLAPDDSLWLQTLQQAGAALGLRLLACGDVHMHARSRKPLQDV 239

Query: 231  LMAVAHSTVVSQKD---RPRVTPDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFIL- 285
            + A+     V++     +P    + +L++R  + S++   P A LE T+E+A RCSF L 
Sbjct: 240  VTAIRLGRTVAECGFALQPNA--ERHLRSRLRLASLY---PRAMLEVTLELAGRCSFSLD 294

Query: 286  --QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
              + H P       KE           L      G   R  QG   K       R +L  
Sbjct: 295  EIRYHYP-------KESVLAGMTATQTLAWLTWEGAAGRYPQGIPGK------VRDQLHK 341

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL +I   K+  YFL V D +++A+   I +  GRGS A S   Y L IT ++P   +LL
Sbjct: 342  ELALIEDKKYEMYFLTVHDIVRYARSVGI-LCQGRGSAANSAVCYCLGITAVNPHGGNLL 400

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERF++ +R   PD D+DF   RR+EVI+Y+  KYG +R A        ++++ALRDVG+
Sbjct: 401  FERFISKERGEPPDIDVDFEHARREEVIQYIYGKYGRDRAALTAVVSCWRSRSALRDVGK 460

Query: 464  ALQMPYSQVDRLCK--------LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL--- 512
            AL +P   +D L K               H  +  A A++ +  EA L +  V R L   
Sbjct: 461  ALGLPADLIDALAKGQYWFSEHAQAQAQTHAETADA-AEEGQVPEA-LPEDWVQRKLQEA 518

Query: 513  --------------------EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                                E++ +L+   RH S H  G V+ +  L++LVP+     + 
Sbjct: 519  EVLACEMHCAVGAHRLRLWIELAWQLKDSPRHLSQHVGGFVLTEGKLTRLVPVEPATMAR 578

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHL 611
              V Q++   ++  GL+K D L L  LT+L+ +L+  A+ RG   +L  IP +D  TY +
Sbjct: 579  RSVIQWDKDDLDVVGLLKVDVLALGMLTMLRNALNERARWRGESWELHQIPQEDAATYEM 638

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY-----NNRKN 666
            +    T+G FQ+ES      L  +QP    D++  V++ RPGPI   +V+       R  
Sbjct: 639  ICQADTVGTFQIESRAQMSMLPRLQPRTFYDLVVEVAIVRPGPIQGGMVHPYLLARERAR 698

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEM 725
             K  +    P ++  LK T GV I+QEQVMQIA   + +S  +AD LRR+M   K K  +
Sbjct: 699  RKLPLKLEKPELENALKRTLGVPIFQEQVMQIAIDAAKFSAGKADELRRSMAAWKRKGGV 758

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             K +   I G    G     A  IF  +  F +YGF +SHA ++A+++Y +AW+K H P 
Sbjct: 759  HKFERPLIDGMVARGYKLEFAQAIFAQMLGFGEYGFPESHAYSFALLAYASAWLKRHEPA 818

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP-------------------PSVNTPCV 826
             FL A +  +        +  QDAR+  ++++P                     V  P  
Sbjct: 819  IFLQALLNAQPMGFYSPSQLVQDARRHGVRVLPVDVCHSHWHCTLEAPVQAIRGVAQPQP 878

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
              ++G NR+         +G   A  I   +A  P+  + D   R    +L++  +E+L 
Sbjct: 879  AVRLGLNRVAR-------LGKAAALRIEGEAAQAPWKDVSDLAIRA---RLDKADMEALA 928

Query: 887  FAGALDCF-GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
             A AL    G+ R Q+  +   +                 IFA +      ++ L + + 
Sbjct: 929  AADALRSLAGHRRQQMWDAAAQVSL-------------PPIFA-QAAIHEPRLELPQ-AA 973

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
            E   + F+      G     HPL + +P L + G+K   E    + G  +R   +V  +Q
Sbjct: 974  EGEEIMFDYA--ATGLSLRRHPLALLRPRLARHGLKTAAELRQMLPGQKVRACGIVTVRQ 1031

Query: 1006 QKKTRKGS 1013
            +  T  G+
Sbjct: 1032 RPPTANGT 1039


>gi|197122653|ref|YP_002134604.1| DNA polymerase III subunit alpha [Anaeromyxobacter sp. K]
 gi|254777925|sp|B4UDQ9|DNAE2_ANASK RecName: Full=Error-prone DNA polymerase
 gi|196172502|gb|ACG73475.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. K]
          Length = 1133

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 182/572 (31%), Positives = 295/572 (51%), Gaps = 40/572 (6%)

Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
           G   +D  ++L  EL ++  + ++ YFL V D +++A+   I +  GRGS A S   Y L
Sbjct: 376 GEPPEDVARQLARELELVESLGYASYFLTVWDVVRFARSRGI-LCQGRGSAANSAVCYVL 434

Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
            IT IDP+R  LLFERF++ +R   PD D+DF  +RR+EV++YV  +YG +R   +    
Sbjct: 435 GITSIDPVRMGLLFERFISAERGEPPDIDVDFEHERREEVLQYVYQRYGRDRAGMVCEVI 494

Query: 451 SLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DPAHPVSLQAIADDSRFREARLADP 506
           + + K+ALRDVG+AL +   QVDRL KLI          P  L     D+   E      
Sbjct: 495 TYRGKSALRDVGKALGLSLGQVDRLAKLIGTYEDLGQVGPELLAQAGLDAADSE------ 548

Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
            V   L ++++L+G  RH S H  G VI  RPL + VP+         + Q++   + + 
Sbjct: 549 RVRMTLALARELQGFPRHLSIHVGGFVITRRPLCETVPIEPAAMPGRTIVQWDKDDLAEL 608

Query: 567 GLIKFDFLGLKTLT-LLQKSLDFLAQRGVKVD---------LSLIPFDDHETYHLLTTKG 616
            L+K D LGL  LT L +        R              L+ IP +D E Y +L    
Sbjct: 609 DLLKVDLLGLGMLTALSRALALLARHRPAPASPTAVPHPDALATIPAEDPEVYEMLGRAD 668

Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSI 674
           ++G+FQ+ES         ++P    D++  V++ RPGPI   ++  Y  R++GKE++   
Sbjct: 669 SIGVFQVESRAQMSLAPRLRPRNFYDLVISVAIIRPGPIQGGMIHPYLRRRDGKEQVRYP 728

Query: 675 HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFI 733
           +  ++P+L  T GV ++QEQ M++A + +G++  EAD LRR M  ++  E++   K R +
Sbjct: 729 YAPLEPVLARTLGVPLFQEQAMRLAVIAAGFTPGEADELRRVMTHRRSHEKLAAMKARLV 788

Query: 734 SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
           +G ++ GIS   A  IF+ L  FA YGF +SHAA++A++ Y +AW+K ++P  F  A + 
Sbjct: 789 AGMAERGISGADAEEIFKQLLGFAGYGFPESHAASFALLVYASAWLKRYHPAAFACALLN 848

Query: 794 LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------------GDNRIY-YSL 839
            +           +DA++  +++    V+  C  ++              G+  +    L
Sbjct: 849 SQPMGFYAPHTLVEDAKRHGVEVR--GVDVGCSGWESSLEGAAPGRPAAPGETAVLRVGL 906

Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            A++G+       I+EA A  PF S+ +   R
Sbjct: 907 HAVRGLPRAVGEAILEARAAGPFGSVAELVRR 938



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 122/308 (39%), Gaps = 42/308 (13%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +  +P +  L+  S +S LEGA     ++ + A     A+A+ D N L+  +    +A  
Sbjct: 1   MSHAPRYAELRCKSCFSFLEGASHPEELVGRAAELGLSALALADVNGLYGIVRAHAEAKR 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD- 123
            G+  I+G +L +           G  P      +VLL    EGY  L  LV+R +  + 
Sbjct: 61  QGLPLIVGAELVV----------AGLAPGRPA-RLVLLAQDREGYAGLCRLVTRAHCGEG 109

Query: 124 -------QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
                  + + +V +    +   G  GL  L  G+ G                 +   K 
Sbjct: 110 WTGAPERRERDAVAVPFEAVA-AGARGLFALYPGADG---------------DAVARLKD 153

Query: 177 LFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG R  + + RHR   +  R            +P+  TN+    +       DVL  V 
Sbjct: 154 AFGRRAALAVARHRVAGEEARVLAARSAGRRLGVPVAVTNDVHTHARARQVLQDVLTCVR 213

Query: 236 HSTVVSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAP 290
           H T V +  R R+ P  +  LK   E+  ++SD PE L    +IA +C F ++      P
Sbjct: 214 HGTTVDRAGR-RLFPNAERTLKGPEELARLWSDFPEGLAAAADIADQCRFRMEAIRGEHP 272

Query: 291 ILPRFIEK 298
           + P  +E+
Sbjct: 273 LPPVVVER 280


>gi|187926662|ref|YP_001893007.1| DNA polymerase III, alpha subunit [Ralstonia pickettii 12J]
 gi|241666174|ref|YP_002984533.1| error-prone DNA polymerase [Ralstonia pickettii 12D]
 gi|254777926|sp|B2UJ29|DNAE2_RALPJ RecName: Full=Error-prone DNA polymerase
 gi|187728416|gb|ACD29580.1| DNA polymerase III, alpha subunit [Ralstonia pickettii 12J]
 gi|240868201|gb|ACS65861.1| DNA polymerase III, alpha subunit [Ralstonia pickettii 12D]
          Length = 1079

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 284/1058 (26%), Positives = 463/1058 (43%), Gaps = 114/1058 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA   + ++++       A+A+TD  ++         +    ++
Sbjct: 11   PDYAELHCISNFTFLTGASHPSELVERAKLYGYQALALTDECSVAGTARALVASKEHELK 70

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG +  +   D                 +VLL    EGY  L E+++   L    K  
Sbjct: 71   LIIGSRFTVRNADGEPWLR-----------LVLLAQNIEGYGNLSEIITHARLAAP-KGE 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT----FKKLFGDRLYV 184
             R+    L     E L  L G    P   A          ++LL      +++FGDRL +
Sbjct: 119  YRLLADDLASPQGE-LAHLRGA---PDCLAILLPDYDPDPQQLLAQAWWCQRVFGDRLSI 174

Query: 185  NLQ---RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
             L+   RH   DR+R + V+ ++   ++P+VAT      + +    HDVL A+  S  +S
Sbjct: 175  ALELPLRH-ADDRHRGT-VLAVSEQIDVPMVATGGVQMHTRQRKPLHDVLTAIRLSKPLS 232

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEA----LENTVEIARRCSFILQVHAPILPRFIE 297
            +     + P      R+ M   F    E     L  TVE+A  C+F L            
Sbjct: 233  ECGL-ELAPSAEQAMRTRMQLAFLYQGEGGEKILRRTVELAALCNFSL------------ 279

Query: 298  KECDDIQKEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               D+I+ E  +E           LR +  AG   R   G +++  HAQ     ++ EL 
Sbjct: 280  ---DEIEYEYPSEVVPEGMTPAEYLRAETFAGAARRYPNG-VSEKVHAQ-----IEEELG 330

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            +IA + +  +FL V D +++A+   I +  GRGS A S   Y L IT+++P   + LF R
Sbjct: 331  LIAELGYEPFFLTVYDVVKFARNEGI-LCQGRGSAANSAVCYCLGITEVNPDSGNTLFAR 389

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL+  R   PD D+DF   RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL 
Sbjct: 390  FLSRARNEPPDIDVDFEHQRREEVIQYIYKKYGVTRTALAAALITYRTRSALRDVGRALG 449

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
            +    V+++ K      A   S +  A  +  +      P V R  ++  +L G  RH S
Sbjct: 450  IDLGIVEQVAK----GQAWWDSRKEFAQRAGQQGLDPESPLVLRWAQLVDQLRGFPRHLS 505

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             H  G VI    LS+LVP+      +  V Q++   +E   L+K D L L  LT ++++L
Sbjct: 506  QHVGGFVIAQGKLSRLVPIENAAMENRRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTL 565

Query: 587  DFL-------AQRGVKVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            D +          G    L++  +P DD ETY ++    T+G+FQ+ES   +  L  ++P
Sbjct: 566  DMVDALPGRREHYGATAKLAMQNLPDDDTETYDMICRAETIGVFQIESRAQQSMLPRLRP 625

Query: 638  DCIEDIIALVSLYRPGPIDNIVVY------NNRKNGKEKIVSI-HPLIDPMLKETQGVII 690
                D++  V++ RPGPI   +V+        ++NG    V+   P +  +L+ T GV I
Sbjct: 626  REYYDLVIQVAIVRPGPIQGGMVHPYLQRREAKRNGNTDCVTYPGPEVKAVLERTLGVPI 685

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISG-ASKNGISKTIAVN 748
            +QEQVM+IA     ++  +AD LRR M   K K  + + +ER +     K          
Sbjct: 686  FQEQVMEIAMKAGDFTADDADRLRRDMAAWKRKGNLTQHQERLVHAMVVKRRYDPAFVEA 745

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            + + +  FA+YGF +SHAA +A ++Y ++++K H P  F AA +  +        +  Q+
Sbjct: 746  LCKQMEGFAEYGFPESHAAGFAKLAYVSSFLKCHEPAAFFAALLNSQPMGFYSPSQLVQE 805

Query: 809  ARQFNIQIMPPSVNT--------PCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIME 855
            AR+ +++++P  V          P  D + G++      I   L  I+G+    A  I  
Sbjct: 806  ARRSHVRVLPADVTASVWDSTLHPRADGETGEDGLVQPDIRLGLNRIRGMRKPAAERIEA 865

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
            A A  PF S+ED   R     L+R  L  L  A AL      R Q L     +Q+     
Sbjct: 866  ARAQAPFTSVEDLAHRA---ALDRHDLNVLAAANALKSLAGHRRQALWQTLALQEPG--- 919

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
                   H++    +       + L    +    +    +   LG     HP+++ +  L
Sbjct: 920  -------HDHALLRQARPVEAPLELPAPPIGEEVM---ADYGSLGLSLQSHPVELLRARL 969

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +M             G   R   +V  +Q+  T  G+
Sbjct: 970  ERMRFATAATLAGYRNGQLARACGIVTVRQRPGTANGT 1007


>gi|326404073|ref|YP_004284155.1| error-prone DNA polymerase [Acidiphilium multivorum AIU301]
 gi|325050935|dbj|BAJ81273.1| error-prone DNA polymerase [Acidiphilium multivorum AIU301]
          Length = 1037

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 267/1017 (26%), Positives = 446/1017 (43%), Gaps = 109/1017 (10%)

Query: 20   YSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDM 79
            +S LEGA     ++D+       A+ I D N +   +     A   G++ ++G +L    
Sbjct: 13   FSFLEGASHPQELVDQALYLGHAALGIADRNTVAGVVRAHVAAKQGGLRLLVGSRLG--- 69

Query: 80   QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI 139
                         F   P ++      EG+ RL  L+S    L +G+ +   C   L ++
Sbjct: 70   -------------FEDGPDVIAYPRDREGWGRLCRLLS----LGKGRAAKGGCRLRLDDL 112

Query: 140  --GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE 197
                 G+ ++      P D AF  +  +++          FG  +++   R    D    
Sbjct: 113  EDHAAGMALIVMPPPWP-DAAFAASLDRISG---------FGAPVWLGAARRYAPDDAAR 162

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP--DHYLK 255
             + +         LVA N+ L+ +       DV+  + H   +++    R+ P  + YLK
Sbjct: 163  LEALAALAGRRRRLVAVNDVLYHAPSRRPLQDVMRCIRHGCTIAEAGL-RLEPHGERYLK 221

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILPRFIEKECDDIQKEEEN 309
               EM  +F     A+    EI     F L          P+ P           +  + 
Sbjct: 222  PADEMARLFRGHEAAIAAQAEILDAVGFTLGDIRYEYPDEPVPP----------GRTPDA 271

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L + A AG  +R   G +     A   R     EL++IAR+ ++ YFL V D + +A++
Sbjct: 272  HLADLAWAGAAIRY-PGGVPVAIAATIRR-----ELDLIARLGYARYFLTVNDIVGFARR 325

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I +  GRGS A S   YAL IT +DP    LLFERF++ +R   PD D+DF  +RR+E
Sbjct: 326  QGI-LCQGRGSAANSAVCYALGITAVDPAEIDLLFERFVSAERGEPPDIDVDFEHERREE 384

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC--KLIPNDPAHPV 487
            VI+Y+  +YG  R A   T    ++++A+RDVG+AL +  + ++ L      P D     
Sbjct: 385  VIQYIYGRYGRARAAIAATVIHYRSRSAIRDVGKALGLDAATIETLAAQSWNPGD----- 439

Query: 488  SLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               A+  D R REA L  A P + R + ++++L  L RH S H  G V+    L ++VP+
Sbjct: 440  ---ALWSDPRLREAGLDPAAPDLRRAIGLARELVDLPRHLSQHVGGFVLTRTRLDEIVPV 496

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                       +++   I+   L+K D L L  LT ++K    L   G+  DL+ +P +D
Sbjct: 497  GPAAMPGRSFIEWDKDDIDALKLMKVDVLALGMLTCIRKCFAML---GI-ADLADVPRED 552

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
               Y +L+    LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  
Sbjct: 553  PRVYDMLSRGDALGVFQVESRAQMNMLPRLRPRAFYDLVIEVAIVRPGPIQGDMVHPYLR 612

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+NG E      P +  +L +T GV ++QEQ M+IA   +G++  EA+ LRRAM   +  
Sbjct: 613  RRNGLEAPDMPSPALRSVLGKTLGVPLFQEQAMRIAIEAAGFTPGEANELRRAMATFRSP 672

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +++   R I G   +G  +  A   F  +  F  YGF +SHAA++A + Y +AW+K +
Sbjct: 673  GTIERFFNRMIEGMIASGHERDFAERCFRQIEGFGTYGFPESHAASFAHLVYVSAWLKCY 732

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            +P EF AA +  +     +  +  +DAR+  I +    V     D  V    +   L  I
Sbjct: 733  HPAEFAAALLNAQPMGFYQPAQIVRDAREHGIAVRAADVAASSWDCTVESGALRLGLRMI 792

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV-LESLVFAGALDCFGYSRMQL 901
            +G                      D+ +R+D+ +   R+ L +L           +    
Sbjct: 793  RGFRA-------------------DWAARIDALRAEGRICLPALASLPTAALEALAEAGA 833

Query: 902  LQSLDNIQKYAQW----VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            L+SL   ++ A W    VE   +    ++ A  +GT      L     E+       + R
Sbjct: 834  LRSLGMDRRTALWQAGLVEPPASFPLLSLAAPPRGT----PDLPAMRPED---HVAADYR 886

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGNNIRLAAMVVSKQQKKTRKGS 1013
              G     HP+ + +   R  G+   +   A    G+ + LA +V  +Q+  + +G+
Sbjct: 887  ATGLSLRAHPMGLLRGHPRLEGMMTCQAVTAFAADGSIVDLAGIVTIRQRPGSARGT 943


>gi|332044349|gb|EGI80543.1| DNA polymerase III, alpha subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 985

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 233/834 (27%), Positives = 397/834 (47%), Gaps = 92/834 (11%)

Query: 224  DYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
            D+ AH +L A+ ++ ++S+ ++    +  H + +  E+   F + P  L+NT  I  +CS
Sbjct: 167  DFNAHRLLRAIDNNILLSKLEKTEECSIQHKMLSSVELEKAFVEFPFILQNTKNILNQCS 226

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA--QDYRQR 340
                       + ++   D      EN+ +      L  RL +  I+  Y A  +  ++R
Sbjct: 227  INFGFGNERKSQNLKVYTDSF----ENDFK------LLERLCKEKISTRYVAPSKKVKER 276

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L  EL  I  M+F  +FLI  D I +AK        GRGSGA S+ AY + ITD+DP+  
Sbjct: 277  LYKELETIKSMRFVSFFLINYDIISYAKSKGY-FHIGRGSGANSIVAYIIGITDVDPIEL 335

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             L FERF+NP R S PDFDIDF    RD+V  Y+  ++ H   A + T+ + + +AA+R+
Sbjct: 336  DLYFERFINPFRASPPDFDIDFSWKDRDDVTAYIFKRFKH--TALLATYNTFKYRAAVRE 393

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            +G+   +P  ++D+LCK                  + F   +L D     +++ ++ +EG
Sbjct: 394  IGKVFGLPKEEIDKLCK------------------NNFNYYKL-DEFSKLVIKYAKLIEG 434

Query: 521  LYRHASTHAAGIVIGDRPL-----SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
               + S H+AGI+I D+P+     + L P         P  QF+M   E  G+ KFD LG
Sbjct: 435  FPNYISVHSAGILILDKPIHNYSATNLPP------KGFPTLQFDMNIAEDVGIFKFDILG 488

Query: 576  LKTLTLLQKSLDFLAQR---GVKVDLSLIPF--DDHETYHLLTTKGTLGIFQLESSGMRQ 630
             + L  ++ +L+ +++       +D++ I     D +  +LL + G +G + +ES  MR 
Sbjct: 489  QRGLAKIKDALEIISENRPDSPPIDITNIEAFKKDPKINNLLKSGGAIGAYYVESPAMRG 548

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGV 688
             ++ +Q     +++A  S+ RPG   + +   +  R    EK    HP++  ++ ET GV
Sbjct: 549  LMQQLQTQNYIELVAASSIIRPGVSGSGMKEEFIKRHRYPEKRKEAHPILYKIMPETYGV 608

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI--KEEMDKQKERFISGASKNGISKTIA 746
            ++YQE V+++A   +G +L EADVLRR M  K   K+E +  +E+F       G  + + 
Sbjct: 609  MVYQEDVLKVANQFAGLTLGEADVLRRGMSGKYRSKKEFEAVEEKFYKNCRNKGFDEKLI 668

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
             +++  +  FA Y F K H+A+YAV SYQ+ ++K +YP+EF+ A +          + + 
Sbjct: 669  TDVWNQIKSFAGYAFAKGHSASYAVESYQSLYLKCYYPLEFMTAVLN-NGGGFYSAEHYF 727

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSL 865
             +AR+   +I  P +N      K+    IY     +K +   T + I+ E   +  F SL
Sbjct: 728  HEARKQGAKICAPCINKSDHPNKLIGKTIYLGFGYLKNLELFTIKRILSERQLNGDFTSL 787

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCF---GYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
            ++F  R+         +E L     +D F   G S+++LL          +   K   N 
Sbjct: 788  DNFIDRLTI------TIEQLTILIRIDAFKFTGKSKVELLW-----HSIFKLNAKRDYNS 836

Query: 923  HENIFAHEKGTFSDKITLEKFSV---ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
               +F  E   F+    L K +V   EN+     +E  +LGF     PL  Y  ++ +  
Sbjct: 837  QSKLFISEHKKFN----LPKLNVSWIENAY----DEMELLGF-----PLCDYFNLVNENT 883

Query: 980  IKG-YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              G     +    G N+ +   +V+ +   T KG  +   TF +     E N+F
Sbjct: 884  DNGILALKMKNYVGKNVLIYGSLVTTRYNNTSKGELMRLSTFIDK----EGNYF 933



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          ++L  H+ YSL  G  S  ++LD    +   +I ++D NN  + L F  +A    I+P++
Sbjct: 1  MYLNCHTYYSLRYGTFSELDLLDLAKENNYDSIVLSDINNTSACLNFIHQANLRNIKPVV 60

Query: 72 G 72
          G
Sbjct: 61 G 61


>gi|309782805|ref|ZP_07677526.1| error-prone DNA polymerase [Ralstonia sp. 5_7_47FAA]
 gi|308918583|gb|EFP64259.1| error-prone DNA polymerase [Ralstonia sp. 5_7_47FAA]
          Length = 1079

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 271/951 (28%), Positives = 433/951 (45%), Gaps = 102/951 (10%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S+++ L GA   + ++++       A+A+TD  ++         +    ++
Sbjct: 11  PDYAELHCISNFTFLTGASHPSELVERAKLYGYQALALTDECSVAGTARALVASKEHELK 70

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG +  +   D                 +VLL    EGY  L E+++   L    K  
Sbjct: 71  LIIGSRFTVRNADGEPWLR-----------LVLLAQNIEGYGNLSEIITHARLA-ASKGE 118

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT----FKKLFGDRLYV 184
            R+    L     E L  L G    P   A          ++LL      +++FGDRL +
Sbjct: 119 YRLLADDLASPQGE-LAHLRGA---PDCLAILLPDYDPDPQQLLAQAWWCQRVFGDRLSI 174

Query: 185 NLQ---RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            L+   RH   DR+R + V+ ++   ++P+VAT      + +    HDVL A+  S  +S
Sbjct: 175 ALELPLRH-ADDRHRGT-VLAVSEQIDVPMVATGGVQMHTRQRKPLHDVLTAIRLSKPLS 232

Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEA----LENTVEIARRCSFILQVHAPILPRFIE 297
           +     + P      R+ M   F    E     L  TVE+A  C+F L            
Sbjct: 233 ECGL-ELAPSAEQAMRTRMQLAFLYQGEGGEKILRRTVELAALCNFSL------------ 279

Query: 298 KECDDIQKEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
              D+I+ E  +E           LR +  AG   R   G ++   HAQ     ++ EL 
Sbjct: 280 ---DEIEYEYPSEVVPEGMMPAEYLRAETFAGAARRYPNG-VSDKVHAQ-----IEEELG 330

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
           +IA + +  +FL V D +++A+   I +  GRGS A S   Y L IT+++P   + LF R
Sbjct: 331 LIAELGYEPFFLTVYDVVKFARNEGI-LCQGRGSAANSAVCYCLGITEVNPDSGNTLFAR 389

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           FL+  R   PD D+DF   RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL 
Sbjct: 390 FLSRARNEPPDIDVDFEHQRREEVIQYIYKKYGVTRTALAAALITYRTRSALRDVGRALG 449

Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
           +    V+++ K      A   S +  A  +  +      P V R  ++  +L G  RH S
Sbjct: 450 IDLGIVEQVAK----GQAWWDSRKEFAQRAGQQGLDPESPLVLRWAQLVDQLRGFPRHLS 505

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            H  G VI    LS+LVP+      +  V Q++   +E   L+K D L L  LT ++++L
Sbjct: 506 QHVGGFVIAQGKLSRLVPIENAAMENRRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTL 565

Query: 587 DFL-------AQRGVKVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
           D +          G    L++  +P DD ETY ++    T+G+FQ+ES   +  L  ++P
Sbjct: 566 DMVDALPGRREHYGATAKLAMQHLPDDDTETYDMICRAETIGVFQIESRAQQSMLPRLRP 625

Query: 638 DCIEDIIALVSLYRPGPIDNIVVY------NNRKNGKEKIVSI-HPLIDPMLKETQGVII 690
               D++  V++ RPGPI   +V+        ++NG    V+   P +  +L+ T GV I
Sbjct: 626 REYYDLVIQVAIVRPGPIQGGMVHPYLQRREAKRNGNTDCVTYPGPEVKAVLERTLGVPI 685

Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISG-ASKNGISKTIAVN 748
           +QEQVM+IA     ++  +AD LRR M   K K  + + +ER +     K          
Sbjct: 686 FQEQVMEIAMKAGDFTADDADRLRRDMAAWKRKGNLTQHQERLVHAMVVKRRYDPAFVEA 745

Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
           + + +  FA+YGF +SHAA +A ++Y ++++K H P  F AA +  +        +  Q+
Sbjct: 746 LCKQMEGFAEYGFPESHAAGFAKLAYVSSFLKCHEPAAFFAALLNSQPMGFYSPSQLVQE 805

Query: 809 ARQFNIQIMPPSVNT--------PCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIME 855
           AR+ +++++P  V          P  D + G++      I   L  I+G+    A  I  
Sbjct: 806 ARRSHVRVLPADVTASVWDSTLHPRADGETGEDGLVQPDIRLGLNRIRGMRKPAAERIEA 865

Query: 856 ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQSL 905
           A A  PF S+ED   R     L+R  L  L  A AL    G+ R  L Q+L
Sbjct: 866 ARAQAPFTSVEDLAHRA---ALDRHDLNVLAAANALKSLAGHRRQALWQTL 913


>gi|85716686|ref|ZP_01047655.1| DNA polymerase III subunit alpha [Nitrobacter sp. Nb-311A]
 gi|85696526|gb|EAQ34415.1| DNA polymerase III subunit alpha [Nitrobacter sp. Nb-311A]
          Length = 1167

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 232/839 (27%), Positives = 384/839 (45%), Gaps = 73/839 (8%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL----EFSQKACA 64
           PS+  + + +++S L GA      + + +  + P I I D N L   +    E       
Sbjct: 8   PSYAEIGIATNFSFLHGASHPQEYVHQASELRLPVIGIADRNTLAGVVRAYTELENPEVR 67

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              + +IG +L                     P I++       Y RL +L++R  L  +
Sbjct: 68  YKPRLLIGSRLVF---------------IDGTPDILIYPRGRHAYGRLCQLLTRGKLAAE 112

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            K   R+ L  L +     L++LT      +   F    +  A K L   ++   D +++
Sbjct: 113 -KGECRLKLDDLLDFSEGQLLVLT------LPHRF---ETTTALKVLERLRQSRADGVWL 162

Query: 185 NLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                +RG D  R +Q+ ++A +  +PL+ATN  L+         DVL  V     +   
Sbjct: 163 AASLLYRGDDVRRLAQLDRIAASARMPLLATNEVLYHHPARRPLQDVLTCVREKAAIDAI 222

Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILPRFI 296
            R  V   + +LK   EM  +F DLP A+  T+  A R  F L          P+ P   
Sbjct: 223 GRKLVINAERHLKPAHEMEKLFRDLPGAIAETMVFASRIEFTLDQLQYQYPDEPVPP--- 279

Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                   K  +  L +   AG+E     GA       +D +  L  EL++IA + ++ Y
Sbjct: 280 -------GKSAQRHLEDLTWAGVEKYFPGGA------DEDLKAALRKELDLIAELNYAHY 326

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
           FL V D ++WA+  +I +  GRGS A S   Y L IT +DP +  LLFERF++ +R+  P
Sbjct: 327 FLTVHDIVRWARDQDI-LCQGRGSAANSAVCYVLGITSVDPTKVDLLFERFISKERLEPP 385

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           D D+DF   RR+EV++YV  +YG  R A I T    + ++A+RDVG+AL +       L 
Sbjct: 386 DIDVDFEHSRREEVMQYVYRRYGRHRAAIIATVIHYRPRSAIRDVGKALGLTEDVTAALA 445

Query: 477 KLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             +       VS      D++ R+A     +P V   +E++ +L G  RH S H  G V+
Sbjct: 446 DTVWGSWGDDVS------DAQIRQAGFDPQNPMVRLAVELATELIGFPRHLSQHVGGYVL 499

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRG 593
               L   VP+           +++   ++   ++K D L L  LT ++K  D +A  +G
Sbjct: 500 TQDRLDTYVPIGNAAMDGRTFIEWDKDDVDAMRMMKVDVLALGMLTCIRKCFDLIADHKG 559

Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            + +L+ IP D+   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPG
Sbjct: 560 ERWELATIPQDEKPVYDMLCRGESLGVFQVESRAQMNMLPRLRPRTFYDLVIEVAIVRPG 619

Query: 654 PIDNIVVY---NNRKNGKEKIVSIHPL------IDPMLKETQGVIIYQEQVMQIAQLLSG 704
           PI   +V+     R     KI   +P       +  +L+ T GV ++QEQ M+IA + + 
Sbjct: 620 PIQGDMVHPYLKRRTMDPAKIEYPYPKGGDKNELRNVLERTLGVPLFQEQAMRIAIVAAK 679

Query: 705 YSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
           ++  EA+ LRRAM   +    +   +E+ ++     G     A N FE +  F  YGF +
Sbjct: 680 FTSEEANGLRRAMATFRNIGTIGSFQEKMVNSMIARGYDPVFAKNCFEQIKGFGSYGFPE 739

Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           SHAA++A + Y ++W+K  +P  F    +  +        +   DAR+  +++ P  V+
Sbjct: 740 SHAASFAQLVYVSSWLKHFHPDAFCCGLLNSQPMGFYAPAQIVGDARKNGVEVRPLDVS 798


>gi|88803783|ref|ZP_01119306.1| DNA polymerase III alpha subunit [Polaribacter irgensii 23-P]
 gi|88780311|gb|EAR11493.1| DNA polymerase III alpha subunit [Polaribacter irgensii 23-P]
          Length = 985

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 240/882 (27%), Positives = 395/882 (44%), Gaps = 110/882 (12%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           ++L  HS YSL  G  S   +L+   A+   A+A+TD NN  + + F Q+A    I P++
Sbjct: 1   MYLNCHSYYSLRYGTFSEVALLELAVANNINALALTDINNTSACMNFIQQAKKYDIHPVV 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G    +D ++             T    V L     G+Q +   +S          S   
Sbjct: 61  G----VDFRNG------------TSQQFVALAENNTGFQNINRYLSSFLTSKTAIPS--- 101

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSSQVAEKRLLTF--KKLFGDRLY-VNLQ 187
                              +  P++  F  +   +V E  L +F   +  G  +  +N  
Sbjct: 102 -------------------TPTPLENVFIVYPFEKVLELHLTSFAENEFIGISIAEINKL 142

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRP 246
           R     +Y +  V+Q   T              S+ D+ AH +L A+ ++T++S+     
Sbjct: 143 RFSYLKKYEDKIVIQQQVT------------IRSKNDFNAHRLLRAIDNNTLLSKLPTTE 190

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  +   + +   F + P  L+NT  + ++C    +VH         +  +  +  
Sbjct: 191 ECLETERMHTATALEDSFKEFPFILDNTKALLKKC----RVHFGYDTARTNQNLNVYRGS 246

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFLIVADFI 364
            E +        L ++L    + K Y A   +   RL  EL VI  +KF  +FLI  D I
Sbjct: 247 FEED------CTLLLQLCADKLHKRYPAPSLKVHARLKKELKVIVELKFVSFFLINYDII 300

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +AKKNN     GRGSGA S+ AY L ITD+DP+   L FERF+NP R S PDFDIDF  
Sbjct: 301 CYAKKNNF-FHVGRGSGANSIVAYILGITDVDPVELDLYFERFINPFRASPPDFDIDFSW 359

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             R  + +Y+ +++ H  VA + T+ + + +A +R++G+   +P  ++D+L         
Sbjct: 360 KDRATMTQYIFDRFDH--VALLATYNTFKYRAVIRELGKVFGLPKEEIDKLS-------- 409

Query: 485 HPVSLQAIADDSRFREARLADPSVDRL----LEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                         R AR  +P VD +    L+  + +EG   + S H+AG++I ++P+ 
Sbjct: 410 --------------RGAR--EPKVDGIANLVLKYGKLIEGFPNYVSVHSAGVLILNKPIH 453

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVD 597
                    +   P  QF+M   +  G+ KFD LG + L  ++ +L  + +      ++D
Sbjct: 454 YYSATSMPPKG-FPTVQFDMYIADDVGVFKFDILGQRGLAKIKDALQIIKENHPGAPEID 512

Query: 598 LSLIPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
           ++ I     D     LL   G +G + +ES  MR  ++ +Q      ++A  S+ RPG  
Sbjct: 513 ITAIEAFKKDKNINMLLKNGGAIGAYYVESPAMRGLMQKLQTQDYLGLVAASSIIRPGVS 572

Query: 656 DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            + +   Y  R    EK    HP++  ++ ET GV++YQE VM++A   +  SL EADVL
Sbjct: 573 GSGMKEEYIKRHRFPEKRKEAHPILLQIMPETYGVMVYQEDVMKVANQFADLSLGEADVL 632

Query: 714 RRAMGKKIK--EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           RR M  K +  EE    + +FIS   K G +  +   ++  +  FA Y F K H+A+YAV
Sbjct: 633 RRGMSGKYRSIEEFKAVEAKFISNCRKKGHADPLIFEVWNQIKSFAGYAFAKGHSASYAV 692

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            SYQ+ ++K +YP+EF+ A +            +  +A+     I  P +NT      V 
Sbjct: 693 ESYQSLFLKCYYPIEFMTAVLN-NGGGFYTAAHYIHEAKMCGATIALPCINTSDHANIVR 751

Query: 832 DNRIYYSLAAIKGV-GTTTARHIMEASADKPFDSLEDFCSRV 872
              IY     +K +      R + E      F S+EDF +R+
Sbjct: 752 GKTIYLGFGYLKNLEHLLIQRFLTERQLHGCFLSMEDFIARI 793


>gi|27366263|ref|NP_761791.1| DNA polymerase III subunit alpha [Vibrio vulnificus CMCP6]
 gi|71151842|sp|Q8D8I6|DNAE2_VIBVU RecName: Full=Error-prone DNA polymerase
 gi|27362464|gb|AAO11318.1| DNA polymerase III alpha subunit [Vibrio vulnificus CMCP6]
          Length = 1024

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 208/655 (31%), Positives = 330/655 (50%), Gaps = 35/655 (5%)

Query: 181 RLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           RL++ LQRH R  D +       LA   +LP+ A    L    E       L A+ H   
Sbjct: 145 RLWLGLQRHLRHDDEHYLHHCQTLANQFDLPITACGGVLMHRPERLPLQHTLTAIRHGCT 204

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           V Q     +T  +  L++  ++  +F   P+ L  ++ IA  CSF L       P     
Sbjct: 205 VEQLGTQLLTNAEQSLRSEKKLRKLFK--PQWLAESLYIASLCSFDLDSLRYEYP----S 258

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
           E        ++ L +    G ++R  +G            Q +  EL +I   K+  +FL
Sbjct: 259 ELIPDGYTPDSYLEHLVEQGKKLRFPEGV------PDAIEQTIQKELALIKEQKYPFFFL 312

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            + D + +AK+  I +  GRGS A SV  Y L IT +DP + ++LFERF++ +R   PD 
Sbjct: 313 TIHDIVMFAKQQGI-LYQGRGSAANSVVCYCLQITSVDPRQIAVLFERFISKERDEPPDI 371

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DF  +RR+EVI+Y+  KYG +R A   T  S + K+A+R VG+AL +  +Q+D   K 
Sbjct: 372 DVDFEHERREEVIQYIYQKYGRQRAALAATVISYRFKSAVRQVGKALGIEETQLDFFLKN 431

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSV--DRLLEISQKLEGLYRHASTHAAGIVIGD 536
           I N        QA     +  E  L   S+     +++ +++ G  RH S H  G VI  
Sbjct: 432 I-NRRDRQAGWQA-----QLVELGLQPDSLKGQHFIQLVEEIIGFPRHLSQHVGGFVISS 485

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            PL +LVP+      +  + Q++   +E   L+K D L L  LT ++K    + Q   + 
Sbjct: 486 GPLYELVPVENAAMPERTIIQWDKDDLESLKLLKVDVLSLGMLTAIRKCFLSIEQHH-QQ 544

Query: 597 DLSLIPF----DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            LS+       DD   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RP
Sbjct: 545 RLSIADITRRQDDQAVYKMIQKADTIGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRP 604

Query: 653 GPIDNIVVYN--NRKNGKEKIV--SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
           GPI   +V+    R++G+E I   S+H  +  +L+ T GV I+QEQV+++A + +G+S  
Sbjct: 605 GPIQGDMVHPFLKRRDGEEPISYPSVH--VQEVLERTLGVPIFQEQVIKLAMVAAGFSGG 662

Query: 709 EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
           EAD LRRAM   K    + K K + I+G  + G     A  IFE +  F +YGF +SH+A
Sbjct: 663 EADQLRRAMAAWKKNGHVFKFKTKLINGMLERGYELDFAERIFEQICGFGEYGFPESHSA 722

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           ++AV++Y +AW+K +YP EF  A +  +        +  QDA++  I ++P  VN
Sbjct: 723 SFAVLAYCSAWLKHYYPAEFYTALLNSQPMGFYSPSQLVQDAKRHGIAVLPICVN 777


>gi|329115409|ref|ZP_08244163.1| Error-prone DNA polymerase 2 [Acetobacter pomorum DM001]
 gi|326695388|gb|EGE47075.1| Error-prone DNA polymerase 2 [Acetobacter pomorum DM001]
          Length = 765

 Score =  295 bits (754), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 206/693 (29%), Positives = 337/693 (48%), Gaps = 52/693 (7%)

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            F+L +I RM+++ YFL V   + +A+  +I +  GRGS A S   Y L IT IDP R SL
Sbjct: 10   FKLGLIGRMEYAPYFLTVNSIVCYARSQDI-LCQGRGSAANSAVCYVLGITAIDPARNSL 68

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERF++ +R   PD D+DF   RR++VI++V   YG +R A        +AK ALRDVG
Sbjct: 69   LFERFVSEERGEPPDIDVDFEHARREQVIQWVYEHYGRDRAALTAVVIRYRAKGALRDVG 128

Query: 463  RALQMP-------YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
            + + +P         Q+    + + +D  H   +             L+D  V   L++ 
Sbjct: 129  KVMGLPEDLIRTLSGQIHGWGRKLDDDALHDSGID------------LSDRRVRLTLDLV 176

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + L G+ RH S H  G V+    L +LVP+         + +++   I+    +K D L 
Sbjct: 177  RCLIGVPRHLSQHPGGFVLTHDRLDELVPIEPASMEARQIIEWDKDDIDVLKFMKVDILA 236

Query: 576  LKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L  LT ++  LD LA+ +     L  IP +D  TY ++    T+G+FQ+ES      L  
Sbjct: 237  LGMLTCMKTGLDLLAEHKDQHFTLQSIPAEDPRTYAMIRKADTIGVFQIESRAQMSMLPR 296

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            ++P    D++  V++ RPGPI  D +  Y  R+ G E+     P ++ +L +T G+ ++Q
Sbjct: 297  LKPRVFYDLVIEVAIVRPGPIQGDMVHPYLRRREGLEREDYPTPELEAVLSKTLGIPLFQ 356

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            EQ MQ+A + +G++ +EAD LRRAM   K    + + ++R I G   NG  +  A  I++
Sbjct: 357  EQAMQVAMICAGFTAAEADQLRRAMATFKNTGTVSQFQKRLIEGMRANGYPEEFAERIYQ 416

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             L  F  YGF +SHAA++A+++Y ++WMK  +P  FLA+ +  +        +  +DAR+
Sbjct: 417  QLEGFGSYGFPESHAASFAILAYSSSWMKCTHPDVFLASLLNSQPMGFYAPAQLVRDARE 476

Query: 812  FNIQIMPPSVNTPCVDFKV-GDNR------IYYSLAAIKGVGTTTARHIMEASADKPFDS 864
              ++I P  VN    D  + G  R      +   ++ +KG+    A  I+ A + +PF S
Sbjct: 477  HGVEIWPVCVNASRWDSTLEGPERPDGMFAVRLGMSLVKGLANDDAARIVAARSSRPFTS 536

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            ++D   R   K        +L      D F         SL   ++ A W  K   ++  
Sbjct: 537  VDDLWRRAGVKA------AALTHLAEADAF-------RPSLGLARREALWAIKALRDEPL 583

Query: 925  NIFAHEKGTFSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
             +FA  + T   +   + L+        VR  N    LG     HPL   +  LR   I 
Sbjct: 584  PLFAAAEVTREAEEPDVLLQPMRDGAEVVRDYNR---LGLTLRDHPLTFLREDLRAQDIV 640

Query: 982  GYEESVATIRGN--NIRLAAMVVSKQQKKTRKG 1012
               +++    G    + +A +V+ +Q+  + +G
Sbjct: 641  TCRDALNAKDGKRLTVAVAGLVLVRQRPGSAEG 673


>gi|222110960|ref|YP_002553224.1| DNA polymerase iii subunit alpha [Acidovorax ebreus TPSY]
 gi|221730404|gb|ACM33224.1| DNA polymerase III, alpha subunit [Acidovorax ebreus TPSY]
          Length = 1061

 Score =  295 bits (754), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 249/865 (28%), Positives = 395/865 (45%), Gaps = 82/865 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  L   S++S   GA     ++ +       A+A+TD  ++   +     A A G+ 
Sbjct: 4   PAYAELHALSNFSFQRGASHPQELVQRAHKLGYSALALTDECSVAGVVRAHGAAQALGLP 63

Query: 69  PIIG---CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQ 124
            I+G   C  D+                     IV L    +G+  L E ++       +
Sbjct: 64  LIVGSEFCWGDV--------------------RIVALARDVQGWGDLCEFITAARQRAGK 103

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLY 183
           G   V     W    G E L+        P   AF   S  +A    L + + LF    +
Sbjct: 104 GGYRVDAQSPWALLQGCEVLL-------APRREAFVDASDLIAVSACLESVRGLFASNCW 156

Query: 184 VNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           + ++ H   D       + Q      LPLVA  +    S       DVL AV     V+ 
Sbjct: 157 LAVELHTAPDDGLWLRTLTQAGAQLGLPLVAAGDVHMHSRAAKPLQDVLTAVRLGRSVAA 216

Query: 243 KD---RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                +P    +  L+ RS +  ++   P  L  T+++A RC+F L     I  R+   E
Sbjct: 217 CGFALQPHA--EKRLRPRSRLAGLYP--PALLAATLQVAARCTFSLN---EIKYRY-PLE 268

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                      L      G  VR   G        +    +++ EL +IA   +  YFL 
Sbjct: 269 TVQPGMTASQTLACLTWEGARVRYPDGV------PEAVVTQVEKELALIAECGYEMYFLT 322

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V D +++A+   I +  GRGS A S   Y L IT +DP +  LLFERF++ +R   PD D
Sbjct: 323 VHDIVRYARSQGI-LCQGRGSAANSAVCYCLGITAVDPQKTRLLFERFISRERSEPPDID 381

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK-- 477
           +DF  DRR+ VI+Y+ +KYG +R A      S + ++ALRDVG+AL +  + VD   K  
Sbjct: 382 VDFEHDRRETVIQYIYDKYGRDRSAITAVVISYRTRSALRDVGKALGVAPALVDAFAKEH 441

Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADP----SVDRLLEISQKLEGLYRHASTHAAGIV 533
              +D      L A+A+       RL +P    +    L+++++L G  RH S H  G V
Sbjct: 442 HWFDDVLATEHLLALAE-------RLGEPLGAHTAALWLQLARQLRGFPRHLSQHVGGFV 494

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
           + +  L++LVP+         + Q++   ++  GL+K D L L  L+ L++ L+  A  R
Sbjct: 495 LTEGKLTRLVPVEPAAMDGRSIIQWDKDDLDAMGLLKVDVLALGMLSALRRCLEMRAALR 554

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
           G   DL+ IP +D  TY ++    T+G+FQ+ES      L  +QP    D++  V++ RP
Sbjct: 555 GESWDLADIPPEDPATYDMVCRADTVGVFQIESRAQMSMLPRLQPREFYDLVVQVAIVRP 614

Query: 653 GPIDNIVVYN-----------NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
           GPI   +V+             R   +E     +P +   L+ T GV I+QEQVMQIA  
Sbjct: 615 GPIQGGMVHPYLQARERRRQWQRTKREEPFPIEYPRLGNALRRTLGVPIFQEQVMQIAID 674

Query: 702 LSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +G+S  +AD LRR+M   + K E+ + ++ F  G   NG     A  +F+ +  F +YG
Sbjct: 675 GAGFSAGQADELRRSMAAWRRKGEVHRFEKPFKDGLLANGYPPEFADRLFQQILGFGEYG 734

Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
           F +SHA ++A+++Y ++W+K H P  FLAA +  +        +  QDAR+  + ++P  
Sbjct: 735 FPESHAYSFALLAYASSWLKRHEPACFLAALLNAQPLGFYTPAQLVQDARRHGVCVLPID 794

Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGV 845
           V T  VD  + +      LA + GV
Sbjct: 795 VATSDVDCTLEE-----PLAPVAGV 814


>gi|84684454|ref|ZP_01012355.1| DNA polymerase III, alpha subunit [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667433|gb|EAQ13902.1| DNA polymerase III, alpha subunit [Rhodobacterales bacterium
           HTCC2654]
          Length = 960

 Score =  295 bits (754), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 252/936 (26%), Positives = 427/936 (45%), Gaps = 92/936 (9%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LFSALEFSQ------- 60
           FV L + S+++ L G       +D+ A     A+A+ D N+   +  A  FS+       
Sbjct: 2   FVELCITSNFTFLTGGSHAEEYVDRAALTGMRALAVADVNSVAGIVRAHTFSREIAKMAE 61

Query: 61  -KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV--LLVSTAEG--------- 108
            +A     Q IIG      + +  ++      P    P ++    + T EG         
Sbjct: 62  ARARLEAEQGIIGPPKPAHLPEPYRL------PIDNAPRLLPGARIVTEEGLAITALPRD 115

Query: 109 ---YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNS 163
              + RL  L+S   L  + K S   CL  L ++G   +G+ +L                
Sbjct: 116 RAAWGRLSRLISTGRLRAE-KGS---CLIRLGDLGGALDGMELL------------LHPP 159

Query: 164 SQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
                KR+      + D +++ L  R+ G D  R + +  LA    LP VA+   +    
Sbjct: 160 GAGLRKRVGPLLARYRDDMHLVLAPRYDGRDAQRFTHLAALAKELGLPTVASAEPIMHHG 219

Query: 223 EDYEAHDVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
              +  DVL AV     V       +   +  L++ SEM+ +F+   +A+  + EIA R 
Sbjct: 220 RRRKLVDVLSAVREGVRVEALGHLAQPNAERRLRSESEMLRLFAGHEDAVHRSGEIADRL 279

Query: 282 SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV-RLAQGAIAKGYHA---QDY 337
            F L               D+++ E  +E+ +       + RLA+  + + Y A   +  
Sbjct: 280 GFQL---------------DELRYEYPSEIADGETPSARLSRLARRGLRERYPAGAPERV 324

Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            + L+ EL +IA++ +  YFL V D + +A+   I +  GRGS A SV  YAL +T + P
Sbjct: 325 SKMLEHELALIAKLNYEPYFLTVNDIVAFARSRGI-LCQGRGSAANSVVCYALGVTSVSP 383

Query: 398 LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
              +++FERF++  R   PD D+DF  +RR+EVI+++  +YG  R     T    + K A
Sbjct: 384 EIGTMVFERFVSEARDEPPDIDVDFEHERREEVIQHIYQRYGRHRAGLCATVIHYRGKRA 443

Query: 458 LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEIS 515
           +R+VGRA+ +    +  +   +       +        +R RE  L   DP +D++L++ 
Sbjct: 444 IREVGRAMGLTEDTIASMSSQVWGWGGTGMR------SARLREIGLDPDDPKLDQVLDLV 497

Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            +++G  RH S H  G +I +  L +LVP+      D  V  ++   I+  G++K D L 
Sbjct: 498 DEIQGFPRHLSQHVGGFIITEGRLDELVPIENATMEDRTVICWDKDDIDALGILKVDVLA 557

Query: 576 LKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
           L  LT ++K+   + +  G+   L+ +P +D   Y +L    +LG+FQ+ES      L  
Sbjct: 558 LGMLTCIRKAFGLMDSHLGIDHTLASLPPEDPVVYDMLCRADSLGVFQVESRAQMNFLPR 617

Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           M+P    D++  V++ RPGPI   +V+    R+NG+E +      +  +L +T GV ++Q
Sbjct: 618 MKPRTFYDLVIQVAIIRPGPIQGDMVHPFIRRRNGEEAVEFPSDALGAVLGKTLGVPLFQ 677

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           EQ MQIA   +G++  EAD LRR++   K    +   + RFI G   NG     A   F 
Sbjct: 678 EQAMQIAITGAGFTPEEADQLRRSLATFKKHGSVSDFRTRFIRGMRANGYDLDFAERCFS 737

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +  F  YGF +SHAA++A++ Y +AW+K H+P  F  A +  +        +  +DAR+
Sbjct: 738 QIEGFGSYGFPESHAASFALLVYASAWIKCHHPGIFCCALLNAQPMGFYAPAQIVRDARE 797

Query: 812 FNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
             +++ P  +N    D  +     G   +      ++G+    A  I  A  +  +  +E
Sbjct: 798 HGVEVRPVCINASYWDNVMEPDGKGGLAVRLGFRQLRGMAEEEAAWITAARGNG-YAVVE 856

Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
           D   R     ++ R+L  L  A A    G SR + L
Sbjct: 857 DVWRR---SGVSPRLLARLAEADAFADLGLSRREAL 889


>gi|116695007|ref|YP_840583.1| error-prone DNA polymerase [Ralstonia eutropha H16]
 gi|113529506|emb|CAJ95853.1| DNA polymerase III alpha subunit [Ralstonia eutropha H16]
          Length = 1136

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 213/737 (28%), Positives = 368/737 (49%), Gaps = 65/737 (8%)

Query: 175 KKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           + +FG+R ++ L++ +G+ D    +++  ++    +PL A               DVL A
Sbjct: 229 RAVFGERAWIALEQLQGHADALHRARLEAVSAQTGVPLAAAGAVTMHVRSRKPLSDVLAA 288

Query: 234 VAHSTVVSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
           +     +++     + P  + +L+ R  +  ++    EAL  T++IA  C F L     +
Sbjct: 289 IRLGQPLAECGMA-LAPNAEQHLRMRQVLSRLYPR--EALAQTLKIAESCDFSLG----M 341

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
           L     +E     +   + LR +   G   R   G         ++ ++L+ EL +I   
Sbjct: 342 LRYEYPEELVPAGETPISYLRKEVTRGKRERFPNGL------KPEWEKQLEEELQLIEEK 395

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            +  +FL V D +++A+   I +  GRGS A S+  + L +T++ P + +LLF RFL+ +
Sbjct: 396 HYEPFFLTVHDIVRFARGEGI-LCQGRGSAANSLVCFCLYVTEVSPEQANLLFGRFLSRE 454

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R   PD D+DF   RR+EVI+Y+  KYG  R A   +  + ++++ALRDVGRAL +  S 
Sbjct: 455 RDEPPDIDVDFEHQRREEVIQYIYRKYGRHRAALAASLITYRSRSALRDVGRALGIDASV 514

Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLA-------DPSVDRLLEISQKLEGLYRH 524
           V+++ K            QA  D  R    ++A        P+V +   ++ +L G  RH
Sbjct: 515 VEQVVK-----------GQAWWDGGRGFVEKIARYGLDPESPAVQQWASLTAQLRGFPRH 563

Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            S H  G VI    LS+LVP+     +D  V Q++   +E  GL+K D L L  L+ +++
Sbjct: 564 LSQHVGGFVIAQHKLSRLVPIENAAMADRSVIQWDKDDLESLGLLKVDVLALGMLSAIRR 623

Query: 585 SLDFL-----AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
           +L+ +     A+  +   +  IP +D +TY+++    T+G+FQ+ES   +  L  +QP  
Sbjct: 624 ALEMIPNPDPARAALPTRMEDIPKEDPDTYNMICKAETIGVFQIESRAQQSMLPRLQPRQ 683

Query: 640 IEDIIALVSLYRPGPIDNIVVYNN-------RKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
             D++  V++ RPGPI   +V+         R+ GK      +P+I+ +L  T GV I+Q
Sbjct: 684 YYDLVVEVAIVRPGPIQGGMVHPYLKRREAFRRTGKPPTY-FNPVIEKVLGRTLGVPIFQ 742

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           EQVMQ+A   +G+S  +AD LRR+M   + + ++ + ++  +   + NG  ++ A+ I +
Sbjct: 743 EQVMQLAIDAAGFSPGQADQLRRSMAAWRRRGDLRQHQDALVRALTGNGYPESFALAICK 802

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +  F +YGF +SHAA++A + Y +AW+K H+P  FL A +  +        +  QDA +
Sbjct: 803 QIEGFGEYGFPESHAASFAKLVYISAWLKCHHPAAFLCALLNSQPMGFYSPSQLVQDASR 862

Query: 812 FNIQIMPPSVNTP-------CVDFKVGDN---------RIYYSLAAIKGVGTTTARHIME 855
             +Q++P  V           V+  V D          R+   L  +KG+    A  I  
Sbjct: 863 NGVQVLPVDVTISRWDSTLEPVEADVADAQARTRPQHPRVRLGLGRVKGMREAAALRIEA 922

Query: 856 ASADKPFDSLEDFCSRV 872
           A A +PFDS+ED   R 
Sbjct: 923 ARAQRPFDSVEDLALRA 939


>gi|163743759|ref|ZP_02151132.1| DNA polymerase III, alpha subunit, putative [Phaeobacter
            gallaeciensis 2.10]
 gi|161382908|gb|EDQ07304.1| DNA polymerase III, alpha subunit, putative [Phaeobacter
            gallaeciensis 2.10]
          Length = 806

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 235/815 (28%), Positives = 372/815 (45%), Gaps = 49/815 (6%)

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            +VA  + L       +  DVL  +  +  +     R     +  LK  ++M  IF D P 
Sbjct: 1    MVAVGDVLMHRANRRQLADVLTCMRENINIDDIGTRALPNAERRLKAGADMARIFRDHPA 60

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            AL  T EIA RC+F L   +   P   E E +  Q    + L   A  GL+ R   G   
Sbjct: 61   ALRRTAEIANRCNFDLSELSYEYPHE-EAEGETPQ----DRLERLAQEGLKRRYPDGPPD 115

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
            +        + ++ EL+ +  ++F  YFL V D +Q+AK   I +  GRGS A S+  Y 
Sbjct: 116  RAI------KLMEKELSAVKDLEFPAYFLTVHDIVQFAKSKGI-LCQGRGSAANSILCYL 168

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L ITD+ P   +++FERF++  R   PD D+DF  +RR+EVI+++  KYG  R     T 
Sbjct: 169  LGITDVSPDMIAMVFERFVSKHRGEPPDIDVDFEHERREEVIQWIYQKYGRHRAGLCATV 228

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE--ARLADPS 507
               + + A+R+VG+ + +       L   I       V L       R RE    L D  
Sbjct: 229  IHFRTRVAIREVGKVMGLSQDVTAGLSGQIWGMSNGSVDL------DRIRELGLNLEDRR 282

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            + + + +  ++ G  RH S H  G VI    L +L P+      D  V  ++   I+   
Sbjct: 283  LMQTIRLIGEIIGFPRHLSQHVGGFVITSGRLDELAPIENAAMEDRTVICWDKDDIDALR 342

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            ++K D L L  LT ++K+   + Q   +   ++ IP  D  TY +L     +G+FQ+ES 
Sbjct: 343  ILKVDILALGMLTCIRKAFALMQQHENITHSIATIPQKDEATYDMLCAADAVGVFQVESR 402

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
                 L  M+P    D++  V++ RPGPI  D +  Y  R+NG EK     P ++ + + 
Sbjct: 403  AQMNFLPRMRPRKFYDLVIEVAIVRPGPIQGDMVRPYIRRRNGLEKSDPFGPELEQVTRR 462

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISK 743
            T+GV ++QEQ +QIA + +G+S  EAD LRR++   +    + K +++FI+G  KN  S+
Sbjct: 463  TEGVPLFQEQALQIAVVGAGFSAEEADHLRRSLASFRRMGTIGKYRDKFIAGMLKNNYSR 522

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             IA   F  +  FADYGF +SHAAA+A+++Y +AW+K H+P  F  A +  +        
Sbjct: 523  EIAERCFGQIEGFADYGFPESHAAAFAMLAYVSAWLKCHHPAVFACALLNSQPMGFYAPA 582

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASA 858
            +  +D R   I++ P  VN    D  +     G   +      IKG     A  I+ A  
Sbjct: 583  QIVRDVRDHGIEVRPICVNQSQWDNSLERRPDGTLALRLGFRQIKGFKEDDAGWIIAARG 642

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
            +   D  E    R     L    LE L  A A    G SR   L  + +I   A     N
Sbjct: 643  NGYIDP-EHLWLRA---GLAPTALERLAEADAFSSMGISRRDALWQVKSITTPAPLPLFN 698

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVEN-SSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                 E I  +E      ++ L +  VE+  S+R              HP+++ +P L  
Sbjct: 699  DQLDGEAI--NEPNVMLPRMHLGEEVVEDYVSMRLS---------LRAHPMELLRPTLPG 747

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            +      + +       + +  +V+++Q+  T  G
Sbjct: 748  LTCN---DQLIKAPLQRVSVGGLVITRQRPGTASG 779


>gi|37679476|ref|NP_934085.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016]
 gi|71151843|sp|Q7MLY4|DNAE2_VIBVY RecName: Full=Error-prone DNA polymerase
 gi|37198220|dbj|BAC94056.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016]
          Length = 1024

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 206/653 (31%), Positives = 327/653 (50%), Gaps = 31/653 (4%)

Query: 181 RLYVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           RL++ LQRH  +D        Q LA   +LP+ A    L    E       L A+ H   
Sbjct: 145 RLWLGLQRHLHHDDEHYLHHCQTLANQFDLPITACGGVLMHRPERLPLQHTLTAIRHGCT 204

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           V Q     +T  +  L++  ++  +F   P+ L  ++ IA  CSF L       P     
Sbjct: 205 VEQLGTQLLTNAEQSLRSEKKLRKLFK--PQWLAESLYIASLCSFDLDSLRYEYP----S 258

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
           E        ++ L +    G ++R  +G            Q +  EL +I   K+  +FL
Sbjct: 259 ELIPDGYTPDSYLEHLVEQGKKLRFPEGV------PDAIEQTIQKELALIKEQKYPFFFL 312

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            + D + +AK+  I +  GRGS A SV  Y L IT +DP + ++LFERF++ +R   PD 
Sbjct: 313 TIHDIVMFAKQQGI-LYQGRGSAANSVVCYCLQITSVDPRQIAVLFERFISKERDEPPDI 371

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DF  +RR+EVI+Y+  KYG +R A   T  S + K+A+R VG+AL +  +Q+D   K 
Sbjct: 372 DVDFEHERREEVIQYIYQKYGRQRAALAATVISYRFKSAVRQVGKALGIEETQLDFFLKN 431

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
           I N        Q    +   R   L        +++ +++ G  RH S H  G VI   P
Sbjct: 432 I-NRRDRQAGWQVQLVELGLRPDSLKG---QHFIQLVEEIIGFPRHLSQHVGGFVISSGP 487

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
           L +LVP+      +  + Q++   +E   L+K D L L  LT ++K    + Q   +  L
Sbjct: 488 LYELVPVENAAMPERTIIQWDKDDLESLKLLKVDVLSLGMLTAIRKCFRSIEQHH-QQRL 546

Query: 599 SLIPF----DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
           S+       DD   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGP
Sbjct: 547 SIADITRRQDDQAVYKMIQKADTIGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGP 606

Query: 655 IDNIVVYN--NRKNGKEKIV--SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           I   +V+    R++G+E I   S+H  +  +L+ T GV I+QEQV+++A + +G+S  EA
Sbjct: 607 IQGDMVHPFLKRRDGEEPISYPSVH--VQEVLERTLGVPIFQEQVIKLAMVAAGFSGGEA 664

Query: 711 DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
           D LRRAM   K    + K K + I+G  + G     A  IFE +  F +YGF +SH+A++
Sbjct: 665 DQLRRAMAAWKKNGHVFKFKTKLINGMLERGYELDFAERIFEQICGFGEYGFPESHSASF 724

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           AV++Y +AW+K +YP EF  A +  +        +  QDA++  I ++P  VN
Sbjct: 725 AVLAYCSAWLKHYYPAEFYTALLNSQPMGFYSPSQLVQDAKRHGIAVLPICVN 777


>gi|115523844|ref|YP_780755.1| error-prone DNA polymerase [Rhodopseudomonas palustris BisA53]
 gi|122296746|sp|Q07QK9|DNAE2_RHOP5 RecName: Full=Error-prone DNA polymerase
 gi|115517791|gb|ABJ05775.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisA53]
          Length = 1153

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 240/874 (27%), Positives = 392/874 (44%), Gaps = 90/874 (10%)

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
            +RG D+ R +++ ++A    +P +A+N+ L+  E      DVL  V   T + +  R   
Sbjct: 206  YRGDDKRRLARLQRIAAAARVPGIASNDVLYHHESRRALQDVLTCVRDKTTIDKAGRLLE 265

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILPRFIEKECD 301
               + YLK   EM  +F   P+A+  T+  A R SF L          P+ P        
Sbjct: 266  SNAERYLKPTEEMARLFRADPDAIAETLRFADRISFTLDELKYQYPDEPVPP-------- 317

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               K  +  L++    G+      G  AK       R  +D EL +IA  +++ YFL V 
Sbjct: 318  --GKTAQQHLKDLTEQGIAEYFPNGIDAK------LRATIDKELTIIAHRQYAPYFLTVH 369

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +++A+  NI +  GRGS A S   Y L IT +DP    LLFERF++ +R   PD D+D
Sbjct: 370  DIVRYARSQNI-LCQGRGSAANSAVCYVLGITCVDPTEIDLLFERFVSEERDEPPDIDVD 428

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F   RR+EV++Y+  +YG  R A + T    + ++A+RDVG+AL +       L   +  
Sbjct: 429  FEHSRREEVMQYIYRRYGRHRAAIVSTVIHYRPRSAIRDVGKALGLSEDVTAALADTVWG 488

Query: 482  DPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                  S     ++ + R+A L   +P + R ++++ +L G  RH S H  G V+    L
Sbjct: 489  ------SWGKGLNEMQVRQAGLDPTNPMIVRAIDLATELIGFPRHLSQHVGGYVLTQDRL 542

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
             + VP+      +    +++   I+   ++K D L L  LT ++K  D +AQ +G + +L
Sbjct: 543  DEFVPIGNAAMEERTFIEWDKDDIDAVKMMKVDVLALGMLTCIRKGFDLIAQHKGKRYEL 602

Query: 599  SLIPF-DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            + I   DD+E Y +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGPI  
Sbjct: 603  ADIKSEDDNEVYKMLQRGESVGVFQVESRAQMNMLPRLRPRCFYDLVIEVAIVRPGPIQG 662

Query: 656  DNIVVYNNRKNGKEKIVSIHPL--------IDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            D +  Y  R+NG+E +V   P         +  +L +T GV ++QEQ M+IA   + ++ 
Sbjct: 663  DMVHPYLRRRNGQEPVVYPSPAGHAGEANELKTILGKTLGVPLFQEQAMRIAIEAAHFTP 722

Query: 708  SEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             EA+ LRRAM   +    + K + +        G     A N FE +  F  YGF +SHA
Sbjct: 723  DEANQLRRAMATFRNVGTIGKFEAKMTGNLVARGYDPVFAQNCFEQIKGFGSYGFPESHA 782

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI----MPPSVN 822
            A++A + Y +AW+K  +P  F  A +  +        +   DARQ  ++I    +  S +
Sbjct: 783  ASFAKLVYVSAWLKHAHPDAFCCALLNSQPMGFYAPAQIVGDARQNGVEIRGVDVAYSFS 842

Query: 823  TPCVDFKVGDNRIY---------YSLAAIKGVGTTTAR----------HIMEASADKPFD 863
               ++ + G +            +  A         AR           I+EA    PF 
Sbjct: 843  QNTLEERCGQHHAVRLGFRQIDGFRWADFDEANLWQARGDAPPEDWGARIVEAREKSPFT 902

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL----DNIQKYAQWVEKNR 919
            SLE F     +  L +R L  L  A A       R   L ++    D++      V K R
Sbjct: 903  SLEQFAR---ATALPKRALILLADADAFRSLKLDRRAALWAVRRLPDDVPLPLFEVAKAR 959

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
              + EN         ++ +  +  +V  S                GHP+   + +    G
Sbjct: 960  EQQDENAAPLPLMPLAEHVVADYQTVRLS--------------LKGHPMQFLRALFAAEG 1005

Query: 980  IKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKG 1012
            +        T R G   R A +V+ +Q+  + KG
Sbjct: 1006 VNTCRAVSETRRNGRRARCAGVVLVRQRPGSAKG 1039


>gi|261221299|ref|ZP_05935580.1| error-prone DNA polymerase [Brucella ceti B1/94]
 gi|265997260|ref|ZP_06109817.1| error-prone DNA polymerase [Brucella ceti M490/95/1]
 gi|260919883|gb|EEX86536.1| error-prone DNA polymerase [Brucella ceti B1/94]
 gi|262551728|gb|EEZ07718.1| error-prone DNA polymerase [Brucella ceti M490/95/1]
          Length = 836

 Score =  294 bits (753), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 205/661 (31%), Positives = 331/661 (50%), Gaps = 50/661 (7%)

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
           H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R   
Sbjct: 162 HQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLE 221

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILP-RFIEKEC 300
              + +LK   EMV +F D PEA+  T +     +F L          PI P +  ++  
Sbjct: 222 KNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPGKTAQQHL 281

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D+  E     R+     +  ++ QG I K             EL +IAR+++  YFL V
Sbjct: 282 YDLVWE--GAARHYGADMIPPKV-QGLINK-------------ELALIARLEYEPYFLTV 325

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            D +  A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+
Sbjct: 326 YDIVTHAREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDV 384

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DF  +RR+EV++YV ++Y  +R A + T  + ++++A+RDVG+AL +       L   + 
Sbjct: 385 DFEHERREEVMQYVYDRYSRDRAAIVATVINYRSRSAIRDVGKALGLSEDVTAALANTVW 444

Query: 481 NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                 +  Q I      R+A L   +P + R +E++  L G  RH S H  G V+    
Sbjct: 445 GLSGGGIDRQHI------RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDR 498

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------ 592
           L + VP+           +++   I++ GL+K D L L  LT ++K+ D + Q       
Sbjct: 499 LDETVPIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYG 558

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
           G K+ L+ +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 559 GEKLTLASLPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRP 618

Query: 653 GPI--DNIVVYNNRKNGKEKIV--SIHPLIDP------MLKETQGVIIYQEQVMQIAQLL 702
           GPI  D +  Y  R++G+E     S  P   P      +L +T+GV ++QEQ M+IA   
Sbjct: 619 GPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEA 678

Query: 703 SGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
           + ++  EA+ LRRAM    K   +   +++ I G    G  +T A N F  +  F +YGF
Sbjct: 679 AKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGF 738

Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  V
Sbjct: 739 PESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDV 798

Query: 822 N 822
           N
Sbjct: 799 N 799


>gi|300776582|ref|ZP_07086440.1| DNA polymerase III, alpha subunit [Chryseobacterium gleum ATCC
           35910]
 gi|300502092|gb|EFK33232.1| DNA polymerase III, alpha subunit [Chryseobacterium gleum ATCC
           35910]
          Length = 1024

 Score =  294 bits (752), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 206/710 (29%), Positives = 353/710 (49%), Gaps = 55/710 (7%)

Query: 206 THELPLVATNNSLFLSEEDYEAHDVLMAVAHS---TVVSQKDRPRVTPDHYLKNRSEMVS 262
           TH++  V  +   F ++++YE H +L A+  +   T +++KD  R   D    ++  ++ 
Sbjct: 147 THKM--VILHPVTFKTDDEYELHKILRAIDGNILFTKLAEKDYCR--KDELFMSKKTLLD 202

Query: 263 IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            F   PE +ENT  I  +CSF  +   P   ++           +EN+ +      L  +
Sbjct: 203 QFKHYPEIVENTKFIVSQCSFDFEFKTPKNKKYY-------TDSKENDFK------LLSQ 249

Query: 323 LAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
           LA   ++  Y   + +  +R + EL VI ++ F GYFLI  D IQ++K+    +  GRGS
Sbjct: 250 LAYEGLSHRYPDNNRQAIERAEKELTVIHQLNFCGYFLITWDIIQYSKRMGF-MHVGRGS 308

Query: 381 GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
           GA S+ AY L I+DI PL   L FERFLN +R S PDFDID+    RD ++ Y+ +KYG 
Sbjct: 309 GANSIIAYCLGISDICPLELDLYFERFLNLNRKSPPDFDIDWSWKNRDTILEYIFDKYGK 368

Query: 441 ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
             VA   T    + K+  R++G+   +P  ++D+L K                   + RE
Sbjct: 369 NHVAFCGTNVEFKRKSRFRELGKVFGLPKDELDQLSK-------------------KPRE 409

Query: 501 ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
               +  V  + +  Q L G     S H+ GI+I + P++    +    + + P+ QF+M
Sbjct: 410 LHDQNSIVQEIYKYEQLLVGFPNQRSMHSCGILISEEPITNYSVLEFPPK-EFPIVQFDM 468

Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL--SLIPFDDHETYHLLTTKGT 617
              E  GL KFD L  + L  ++ +++ + + +G+ VD+  + I  D+ +    L+   T
Sbjct: 469 HTAEDIGLEKFDILSQRGLGTIKDTVNLIKEKKGINVDIEDTRISKDEVKCNEFLSIGKT 528

Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIH 675
           +G F +ES  MR  L  ++ D  + ++A  S+ RPG   + ++  Y  R N   +    H
Sbjct: 529 IGCFYIESPAMRGLLRRLKCDNYKVLVAASSIIRPGVAQSGMMREYIFRHNHPGQFEYFH 588

Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK--EEMDKQKERFI 733
            + +  L ET G+++YQE V++IA    G S +  DVLRRAM  K +    + K K+ F 
Sbjct: 589 DVFEKELGETYGIMVYQEDVIKIAMHFGGVSAANGDVLRRAMSGKGRSLSALQKLKDDFF 648

Query: 734 SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
               + G  + ++  ++  +  FA Y F K+H+A+YAV SYQ+ ++K +YP+EF+ +++ 
Sbjct: 649 ESCKRKGHPEQLSQEVYRQIESFAGYSFCKAHSASYAVESYQSLFLKAYYPIEFMVSAIN 708

Query: 794 LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
                  + + +  +A+    +I  P +N       +    +Y  L  I+ +  +   +I
Sbjct: 709 -NGGGFYRTEVYVHEAKMSGAKIHNPCINLSEFHTTLYGTDVYLGLMHIEKLEASIKVNI 767

Query: 854 MEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            E   +   + SLEDF  RV+   +    L+ L+F GA    G  + +LL
Sbjct: 768 PEERKENGDYGSLEDFIKRVN---IGIETLQILIFVGAFRFTGKQKHELL 814


>gi|326387892|ref|ZP_08209498.1| DNA polymerase III subunit alpha [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326207938|gb|EGD58749.1| DNA polymerase III subunit alpha [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 1122

 Score =  294 bits (752), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 244/855 (28%), Positives = 387/855 (45%), Gaps = 80/855 (9%)

Query: 11  FVHLQVHSSYSLLEGA---LSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           FV L + S +S L GA   + L     ++  D   AI I D N++   +    +A A  +
Sbjct: 27  FVELGLMSCFSFLRGASDAVDLALTARRLGYD---AIGIADANSMAGVVRLHGEARALHL 83

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE--GYQRLIELVS--RMYLLD 123
           +P+IGC+++                  TV  +  L    +   Y RL  L+S  RM   D
Sbjct: 84  RPVIGCRIE------------------TVEGLSFLAYPRDRAAYGRLCRLISLGRMETPD 125

Query: 124 ---QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA--EKR---LLTFK 175
              Q K   +I L  L + G    ++L               S+ VA  E R   L+   
Sbjct: 126 GEWQDKGRCQITLPMLSDQGEGIALVLVPPRELDTQLTIPVASNVVALGESRAPSLMPLS 185

Query: 176 KLFGD------------RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEE 223
             F D            R       HRG D  R + +  L   + L L+ATN+ L+    
Sbjct: 186 ASFPDLVPRLVHILPGMRHIAACYLHRGDDVARINALDALTRANGLELLATNDVLYHEAA 245

Query: 224 DYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
               HDV+ A+ H T V+          + +LK+  EM  +F   P A+     +A  C+
Sbjct: 246 RRPLHDVMTAIRHRTTVAAAGHLLEAHGERHLKSPQEMQRLFDRWPHAISAARTLADACT 305

Query: 283 FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
           F L       P  I  E  D Q    + L  +  +G   R  +G        +     L 
Sbjct: 306 FSLDDLRYEYPEEICPEGCDPQ----DWLEERTWSGAAWRYPEGV------PESVAATLR 355

Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPV-GPGRGSGAGSVTAYALTITDIDPLRFS 401
            EL +I +++ + YFL + D + +A+    P+   GRGS A S   Y L IT +DP + +
Sbjct: 356 RELALIGKLQLATYFLTIKDIVDFARGQEPPILCQGRGSAANSAVCYCLGITAVDPAKHA 415

Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
           LLF+RF++ +R   PD D+DF  +RR+EVI+Y+  +YG  R     T    + + A+R+V
Sbjct: 416 LLFDRFISEERKEPPDIDVDFEHERREEVIQYIYRRYGRRRAGLCATVIHYRPRMAIREV 475

Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
           GRA+ +       L + +       ++ + +A         L DP + R+L +++++ G+
Sbjct: 476 GRAMGLTDDVTGALARTVWGSWGSGLAERNVAQAG----FDLGDPHLRRVLRLAEQMIGM 531

Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
            RH S H  G ++   PL + VP+      +    +++   I+  G++K D L L  LT 
Sbjct: 532 PRHLSQHVGGFILTQGPLVETVPIGNGAMPERSFIEWDKDDIDALGILKVDVLALGMLTC 591

Query: 582 LQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           ++K LD L A  G  + L+ IP +D   Y +L    +LG+FQ+ES      L  ++P   
Sbjct: 592 IRKCLDLLEAHHGRPLTLATIPREDQAVYDMLCRGDSLGVFQVESRAQMNMLPRLRPQEF 651

Query: 641 EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----------MLKETQGV 688
            D++  V++ RPGPI  D +  Y  R+ G E  VSI P  DP          +LK T GV
Sbjct: 652 YDLVVQVAIVRPGPIQGDMVHPYLKRRRGVET-VSI-PAPDPRHGPPDELTSILKRTYGV 709

Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS-KNGISKTIAV 747
            I+QEQ M+IA   + +   EA+ LR+AM       M  + E  + G     G     A 
Sbjct: 710 PIFQEQAMKIALDAAKFDSGEANRLRKAMATFRSRGMVHELEELMVGRMIARGYDPEFAT 769

Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             F  +  F +YGF +SHAA++A++ Y ++W+K HYP  F    +  +        +  +
Sbjct: 770 RCFNQIKGFGEYGFPESHAASFALLVYVSSWLKCHYPAVFACGLLNSQPMGFYAPAQIVR 829

Query: 808 DARQFNIQIMPPSVN 822
           DAR   + ++P  +N
Sbjct: 830 DARDHGVTVLPVDIN 844


>gi|320156772|ref|YP_004189151.1| DNA polymerase III subunit alpha [Vibrio vulnificus MO6-24/O]
 gi|319932084|gb|ADV86948.1| DNA polymerase III alpha subunit [Vibrio vulnificus MO6-24/O]
          Length = 1024

 Score =  294 bits (752), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 207/655 (31%), Positives = 329/655 (50%), Gaps = 35/655 (5%)

Query: 181 RLYVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           RL++ LQRH  +D        Q LA   +LP+ A    L    E       L A+ H   
Sbjct: 145 RLWLGLQRHLHHDDEHYLHHCQTLANKFDLPITACGGVLMHRPERLPLQHTLTAIRHGCT 204

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           V Q     +T  +  L++  ++  +F   P+ L  ++ IA  CSF L       P     
Sbjct: 205 VEQLGTQLLTNAEQSLRSEKKLRKLFK--PQWLAESLYIASLCSFDLDSLRYEYP----S 258

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
           E        ++ L +    G ++R  +G            Q +  EL +I   K+  +FL
Sbjct: 259 ELIPDGYTPDSYLEHLVEQGKKLRFPEGV------PDAIEQTIQKELALIKEQKYPFFFL 312

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            + D + +AK+  I +  GRGS A SV  Y L IT +DP + ++LFERF++ +R   PD 
Sbjct: 313 TIHDIVMFAKQQGI-LYQGRGSAANSVVCYCLQITSVDPRQIAVLFERFISKERDEPPDI 371

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DF  +RR+EVI+Y+  KYG +R A   T  S + K+A+R VG+AL +  +Q+D   K 
Sbjct: 372 DVDFEHERREEVIQYIYQKYGRQRAALAATVISYRFKSAVRQVGKALGIEETQLDFFLKN 431

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSV--DRLLEISQKLEGLYRHASTHAAGIVIGD 536
           I N        Q      +  E  L   S+     +++ +++ G  RH S H  G VI  
Sbjct: 432 I-NRRDRQAGWQV-----QLVELGLQPDSLKGQHFIQLVEEIIGFPRHLSQHVGGFVISS 485

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            PL +LVP+      +  + Q++   +E   L+K D L L  LT ++K    + Q   + 
Sbjct: 486 GPLYELVPVENAAMPERTIIQWDKDDLESLKLLKVDVLSLGMLTAIRKCFRSIEQHH-QQ 544

Query: 597 DLSLIPF----DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            LS+       DD   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RP
Sbjct: 545 RLSIADITRRQDDQAVYKMIQKADTIGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRP 604

Query: 653 GPI--DNIVVYNNRKNGKEKIV--SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
           GPI  D +  +  R++G+E I   S+H  +  +L+ T GV I+QEQV+++A + +G+S  
Sbjct: 605 GPIQGDMVHPFLKRRDGEESISYPSVH--VQEVLERTLGVPIFQEQVIKLAMVAAGFSGG 662

Query: 709 EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
           EAD LRRAM   K    + K K + I+G  + G     A  IFE +  F +YGF +SH+A
Sbjct: 663 EADQLRRAMAAWKKNGHVFKFKTKLINGMLERGYELDFAERIFEQICGFGEYGFPESHSA 722

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           ++AV++Y +AW+K +YP EF  A +  +        +  QDA++  I ++P  VN
Sbjct: 723 SFAVLAYCSAWLKHYYPAEFYTALLNSQPMGFYSPSQLVQDAKRHGIAVLPICVN 777


>gi|86359661|ref|YP_471553.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42]
 gi|86283763|gb|ABC92826.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42]
          Length = 1150

 Score =  293 bits (751), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 273/1058 (25%), Positives = 472/1058 (44%), Gaps = 94/1058 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+F  +   +++S LEGA     ++ + A  +   + I D N++   +     A A  I+
Sbjct: 4    PAFFEIGARTNFSFLEGASGPEEMVVQAAHLRLGGLGIADRNSVAGVVR--AHAQALQIE 61

Query: 69   PIIGCQLDIDMQ--------DNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLIELVSRM 119
                 + + D Q        D +++    +  F    P I+   S   G+  L  L+S  
Sbjct: 62   EKYKNRHEADFQTWEGEEILDPIRVQPGARLVFSDGTPDILAYPSNRRGWANLCRLLSAG 121

Query: 120  YLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKK 176
             L ++  K +  +  +   E G E ++ +        DR    +       E  L  F++
Sbjct: 122  NLKEEAVKGTCILTETEFMEWGDEMMLAVVP------DRTLVDHQRGQSALEDYLERFRR 175

Query: 177  LFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             F    ++ L   + G DR   + +  LA  + +PL+ATN  L+   E     DV++A+ 
Sbjct: 176  RFRKAFFMALAPAYDGRDRQVFAVLATLAARNRVPLIATNQPLYHHPERRPLSDVVIAIR 235

Query: 236  HSTVVSQKD---RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
                +SQ      P    + YLK   EMV IF D P A+ENT     R SF L+      
Sbjct: 236  EHVQISQAGFLLAPNA--ERYLKGSREMVRIFRDYPGAIENTQAFFGRLSFSLKELEHNY 293

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P     E D  +  +E  L     AG   R  +G   K        +++D+EL +I    
Sbjct: 294  P----PENDPGETPQET-LERLTRAGAIKRYPEGVPPK------VVKQIDYELKLIGDKN 342

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            ++ YFL V   IQ A+ +   +  GRGS A SV  Y L IT+++P + +LLF+RF++ DR
Sbjct: 343  YASYFLTVHRIIQHARYDLKVLCQGRGSAANSVICYCLEITEVNPEKSTLLFDRFISMDR 402

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
               PD D+DF  DRR+EVI+++   Y  E         + + ++A R+V +A  +     
Sbjct: 403  DEPPDIDVDFEHDRREEVIQFIYRTYKREHAGLTAGVTTYRTRSAGREVAKAFGLSEDVQ 462

Query: 473  DRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
              +  L+        S   ++D D++     + DP    +L+ + +L G  RH + H  G
Sbjct: 463  SAISSLVWG-----WSEDNLSDRDAKAAGLDVKDPVTQNVLKYASELLGFPRHLTQHVGG 517

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA- 590
             VI    L ++VP+ +    D  + +++   ++   ++K D L L  LT L+K+   L  
Sbjct: 518  FVITRDRLDEVVPIMKTAMPDRYMIEWDKDDLDNVKILKVDILALGMLTCLRKAFSLLEL 577

Query: 591  QRGVKVDLSLIPFDDH-----ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
               VK  L+ +   +H       Y ++    TLG+FQ+ES      L  ++P    D++ 
Sbjct: 578  HYDVKKALADLGNREHGEEGRPVYEMMGRADTLGVFQIESRAQMSMLPRLKPKIFYDLVI 637

Query: 646  LVSLYRPGPI--DNIVVYNNRKNGKEKIVSI-HPL--IDPMLKETQGVIIYQEQVMQIAQ 700
             V++ RPGPI  D +  Y  R+  + + + I +P   ++ +L+ T GV ++QEQ MQIA 
Sbjct: 638  EVAIVRPGPIQGDMVHPYLKRREQRARNIPIDYPSKELEAVLERTLGVPLFQEQAMQIAI 697

Query: 701  LLSGYSLSEADVLRRAMG--KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
              +G+  +EAD LRRAM   K+     D +K RFI G          A   F  +  F +
Sbjct: 698  TAAGFKPAEADKLRRAMATFKRTGTIGDFEK-RFIEGMVSKNYDPEFAKQCFNQIRGFGE 756

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGF +SHAA++A++ Y ++W+K +YP  F AA +  +        +  +DAR+  ++I+P
Sbjct: 757  YGFPESHAASFALLVYASSWLKAYYPDVFCAAMLNSQPMGFYAPAQLVRDAREHGVKILP 816

Query: 819  PSVNTP--------------CVDFKVGD--------NRIYYSLAAIKGVGTTTARHIMEA 856
              +N                 +DF+ G+        + +      IKG+ +     +++ 
Sbjct: 817  VDINESDWDCTLEEASFDREAIDFRHGEMGGIIKTRHAVRLGFRQIKGLSSDDMERLVDN 876

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD--NIQKYAQW 914
               + + S+ D   R     L + V+E L  A A      SR + L ++   +++  A+ 
Sbjct: 877  RG-QGYGSVRDLWLR---SGLQKSVIERLADADAFRSIHLSRREALWAVRALDVKSAAEE 932

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
            +      +H ++         D +  E+            + R L      HP+   +  
Sbjct: 933  LPLFEQVRHLDLQPEPAAKLPDMLPGEQVI---------EDYRYLSLSLKAHPVSFLREE 983

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            LRK GI    + +    G  + +A +V+ +Q+  + KG
Sbjct: 984  LRKAGITRNVDLLTVPNGKRVTIAGLVLVRQRPGSAKG 1021


>gi|119900246|ref|YP_935459.1| DNA polymerase III subunit alpha [Azoarcus sp. BH72]
 gi|167016908|sp|A1KCL7|DNAE2_AZOSB RecName: Full=Error-prone DNA polymerase
 gi|119672659|emb|CAL96573.1| DNA polymerase III, alpha subunit, putative [Azoarcus sp. BH72]
          Length = 1064

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 239/850 (28%), Positives = 388/850 (45%), Gaps = 57/850 (6%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA---------LEF 58
           +P +  L   S+YS L GA     ++ +  A     +AITD  +L  A         L  
Sbjct: 3   TPPYAELHCLSNYSFLRGASHPEELVARAWALGYQGLAITDECSLAGAVRAHTGLAELRR 62

Query: 59  SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
             +A A   +     +L  +  +  ++    +        +VLL     GY  L  L++ 
Sbjct: 63  DLRAAADAPEASAQDRLLAERAEQFRLVFGAEFRLACGLKLVLLAKNRAGYGNLSALITL 122

Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
                + K S R+  + L  I   G +        P   A +   +  + +    F + F
Sbjct: 123 ARQRSE-KGSYRLVRADLDAISPAGAV--------PDCYALWLPDAASSAEDAHWFARRF 173

Query: 179 GDRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
           G+R ++ ++ H G D      +  +LA    LP +A  +            D L A+   
Sbjct: 174 GERGWLAVELHSGADDAAWLGRTAELAAAAGLPRLAAGDVHMHLRGRRPLQDTLTAIRLG 233

Query: 238 TVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
           T V +         + +L++   +  ++    E LE    +A  C F L       P   
Sbjct: 234 TTVFEAGTALHPNGERHLRHPLRLARLYPA--ELLEAAARLALACDFQLDTLRYEYP--- 288

Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQG---AIAKGYHAQDYRQRLDFELNVIARMKF 353
            +E     +   + LR +  AGL  R  QG   AIA           ++ EL +I  + +
Sbjct: 289 -QEIVPAGETPASYLRRETQAGLARRYPQGVPPAIADN---------VEQELALIIELGY 338

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             +FL V D + +A+   I +  GRGS A S+  YAL IT++DP R SLLF RF++ +R 
Sbjct: 339 EPFFLTVYDIVCFARDEGI-LCQGRGSAANSIVCYALGITEVDPARASLLFGRFISRERD 397

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
             PD D+DF  DRR+ VI+Y+  KYG +R A   T    + + ALRD GRAL     Q+D
Sbjct: 398 EPPDIDVDFEHDRRETVIQYIYGKYGRDRAALAATVIRYRTRGALRDAGRALGFGQPQID 457

Query: 474 RLCKLIP---NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            L + +         P  L  +  D        A P V + L+++  L G  RH S H  
Sbjct: 458 ALARSLAWWDKRDQLPARLIELGLDP-------ASPRVAKWLDLTGMLIGFPRHLSQHVG 510

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           G VI   PL +LVP+      +  V Q++ + +E  GL+K D L L  L+++++SL+ + 
Sbjct: 511 GFVISRGPLGRLVPIENAAMPERSVIQWDKEDLEALGLLKVDVLALGMLSVIRRSLELVG 570

Query: 591 -QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            +RG    L  IP  D  T+ +L    ++G+FQ+ES      L  ++P    D++  V++
Sbjct: 571 RRRGAPFALPHIPPKDAATFDMLCAADSVGVFQVESRAQMAMLPRLRPRQFYDLVVQVAI 630

Query: 650 YRPGPIDNIVVYNNRKNGKEKIVSIHPL------IDPMLKETQGVIIYQEQVMQIAQLLS 703
            RPGPI   +V+    N  +   S   L      +  +L+ T GV I+QEQVM++A++ +
Sbjct: 631 VRPGPIQGDMVHPYLTNRADPAASARTLARLPADVRAVLERTLGVPIFQEQVMKLAEVAA 690

Query: 704 GYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
           G++  EAD LRRAM   + K  +++ K++   G    G     A  +   +  F +YGF 
Sbjct: 691 GFTPGEADQLRRAMASWRQKGHIERFKQKLRDGMKARGHDSDFADALCRQIEGFGEYGFP 750

Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           +SHAA++A+++Y +AW+K H P  FL   +  +        +  QDAR+  +++ P  V 
Sbjct: 751 ESHAASFALLAYASAWLKRHEPEAFLCGLLNSQPMGFYAPAQLLQDARRHGVEVRPVDVT 810

Query: 823 TPCVDFKVGD 832
               D  + D
Sbjct: 811 ASAWDATLED 820


>gi|326317329|ref|YP_004235001.1| DNA polymerase III subunit alpha [Acidovorax avenae subsp. avenae
            ATCC 19860]
 gi|323374165|gb|ADX46434.1| DNA polymerase III, alpha subunit [Acidovorax avenae subsp. avenae
            ATCC 19860]
          Length = 1076

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 233/832 (28%), Positives = 383/832 (46%), Gaps = 65/832 (7%)

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSD 266
            +LPLVA  +      +     DV+ AV     VS+     +   +  L+ R  +   +  
Sbjct: 200  DLPLVAAGDVHMHVLQRKPLQDVVTAVRLGRPVSECGFALQAHGERRLRPRMRLAGFYP- 258

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
             P  L  T+E+A RC+F L     I  R+  +   +     E  L     AG   R  QG
Sbjct: 259  -PALLAATLEVAARCTFSLD---EIRYRYPRETVPEGMTPGEA-LAAYTEAGARERYPQG 313

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                     + R+++  EL +IA  ++  YFL V D ++ A++  I +  GRGS A S  
Sbjct: 314  V------PPEVREQIAKELELIAHCRYEMYFLTVHDIVREARRRGI-LCQGRGSAANSAV 366

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
             Y L IT +DP +  LLFERF++ +R   PD D+DF  DRR+EVI+Y+  KYG ER A  
Sbjct: 367  CYCLGITAVDPTKTRLLFERFISKERDEPPDIDVDFEHDRREEVIQYIYGKYGRERAAIA 426

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE--ARLA 504
                + + ++ALRDVG+AL +  + VD   K       H    + IA   R +E  A L 
Sbjct: 427  AVVITYRTRSALRDVGKALGVAPAVVDAFAK------DHHWFDEDIA-AGRLQELAAGLG 479

Query: 505  DP----SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
             P    +    LE++Q+L G  RH S H  G V+ +  L++LVP+         + Q++ 
Sbjct: 480  APIGAHTAALWLELAQELRGFPRHLSQHVGGFVLTEGKLTRLVPVEPASMDGRSIIQWDK 539

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLG 619
              ++   L+K D L L  L+ L+++L   A  RG   +L+ IP +D  TY ++    T+G
Sbjct: 540  DDLDDMHLMKVDVLALGMLSALRRALGLRAALRGQAWELADIPREDPATYDMICAADTVG 599

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY-----NNRKNGKEKIVSI 674
            +FQ+ES      L  ++P  + D++  V++ RPGPI   +V+       R+  KE +   
Sbjct: 600  VFQIESRAQMSMLPRLKPRELYDLVVEVAIVRPGPIQGGMVHPYLQARERRARKEALELE 659

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFI 733
            H  + P L+ T GV I+QEQVMQIA + + ++   AD LRR+M   K +  + + ++  +
Sbjct: 660  HEDLRPALERTLGVPIFQEQVMQIAMIAADFTPGMADDLRRSMAAWKRRGGVHRFEQVLM 719

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
             G  KN  S   A  I++ +  F +YGF +SHA ++A+++Y ++W K H P  FL A + 
Sbjct: 720  EGMRKNEYSPEFAQRIYQQMLGFGEYGFPESHAYSFALLAYASSWFKRHEPACFLVALLN 779

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSV------------NTPCVDFKVGDNRIYYSLAA 841
             +        +  QDAR+  ++++P                 P    +     +   L  
Sbjct: 780  SQPMGFYTPSQLVQDARRHGLRVLPADAAHSDWDSTLEGPAAPLPGLQQAQPAVRLGLRL 839

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            + G G   A  +M A    PF  ++D   R    + + + L +     +L   G+ R Q+
Sbjct: 840  VAGYGPEAAARLMRARDAGPFADVQDLALRARQDRQDLQALAAADALRSLA--GHRRQQM 897

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
              +    +  A   E      HE   A  +    ++I  +  +               G 
Sbjct: 898  WDAAAQRRAPALLQE---APVHEAPLALPEAPEGEEIVFDYAAT--------------GL 940

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
                HP+ + +  +    I+  +   A   G  +R   +V  +Q+  + KG+
Sbjct: 941  TLRRHPMALLRERMACWRIQAAQALQAVPHGRRVRACGIVTVRQRPGSAKGT 992


>gi|203454755|ref|YP_002225071.1| gp192 [Mycobacterium phage Myrna]
 gi|197311803|gb|ACH62161.1| gp192 [Mycobacterium phage Myrna]
          Length = 1138

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 283/1062 (26%), Positives = 479/1062 (45%), Gaps = 133/1062 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V L  H   S L+G      I+++       A+++TD + +   +        AGI+ +
Sbjct: 8    YVALHNHGDTSFLDGRARHEEIVERAVELGNEAVSLTDHDEVNGHINMWNLCQKAGIKFV 67

Query: 71   IGCQLD--IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             G +    +D +++ +++  G         I LL    EG + L  L S  Y      + 
Sbjct: 68   PGAEQRWLMDPEESRRLSTSGYD----YSHICLLAENNEGLKNLWTLSSLAYEPGNFYRY 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++    +++  + GL    G            +  + A +       +FGDR Y  L  
Sbjct: 124  PQLNPPLMKQYAS-GLWASDGCGLTRFAGYIEEDDEESARQEWAVLLDIFGDRFYSELHT 182

Query: 189  HR---GYDR---YRESQV-----------VQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             +     DR    +E ++           V+ A    +PLV  N++ +  E D++ H ++
Sbjct: 183  FKFLESEDRPLDAKEREINAKITKMNHAKVRFAQEMGVPLVVVNDAHYAWERDWKQHRLV 242

Query: 232  MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF-------SDLPEALENTVEIARRCSFI 284
              +       Q +      D ++ +  E+V          S + EA++NT  IA  C+  
Sbjct: 243  WKMNTKNKKDQSEGNAHAAD-WMMSADELVHYMGLHGISRSIVEEAVKNTRMIADSCT-- 299

Query: 285  LQVHAPI-LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            +++   I +PR  + + +D         R   +   E    +    KG   + YR RL+ 
Sbjct: 300  VEIKPTINMPRLHDTDEED---------RAAFLRSCEEGFKRFVTDKGLDEETYRARLER 350

Query: 344  ELNVIARMKFSGYFLIVAD---------FIQWAKKNNIP----VGPGRGSGAGSVTAYAL 390
            E  +I    F GYF +V+D         +I+W K    P     GPGRGSG GS+  Y L
Sbjct: 351  EQKLIIDKDFYGYFNVVSDYMLAARSGEYIKWVKPGAKPKPCICGPGRGSGGGSLVNYLL 410

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             IT +DP+++ L FERF+NPDR   PD D+DF +  R +++ Y+  +YG ++V  I T  
Sbjct: 411  GITSLDPIKYDLSFERFINPDRPDFPDIDVDFQKSHRKDLLGYMAARYGGDKVVAIGTKA 470

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLI-------PND---------PAHPVSLQAIAD 494
                  A++D+ +AL + +     + KLI        ND         P    +L+ I  
Sbjct: 471  KSGPARAIQDLCKALGIDFKDSLAMSKLIKKVDFSDTNDYEVNPDYVPPTWEETLELIGG 530

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS-DL 553
            + +    + AD     L   +Q + GL R A  HAAGI +   P+    P  R   S D 
Sbjct: 531  ELQPYMEKYADTG---LFRYAQDMVGLSRQAGVHAAGIFMDTDPILGKAPTRRKGGSPDA 587

Query: 554  PV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVD----LSLIPFDDHE 607
            PV TQF+M+ +   G +K DFL  K L +L  + D + +R G  +D    L   P +  E
Sbjct: 588  PVATQFDMEEMAWLGAVKMDFLSNKGLDVLSIARDLIWERHGKWIDYDGFLYGAPPEGAE 647

Query: 608  TYHLLTTK-------------GTLGIFQLES-SGMRQALEGMQPDCIEDIIALVSLYRPG 653
              H+   K              T GIFQ+ + SG +QA +  +P  ++D+  LVS+ RPG
Sbjct: 648  IIHMDDDKYADPTIWEQIDLGHTAGIFQINTPSGTKQA-KRFKPRNLKDLADLVSVNRPG 706

Query: 654  PI---DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +     +  Y  R++G+E+I   HPL++ +   T G+++YQE ++   +LL+ ++  E 
Sbjct: 707  VLRVPGLLDRYMRRRHGEEEITYDHPLLEQVTGHTMGILVYQEDLVAACRLLANFTPGEG 766

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKN------GISKTIAVNIFELLAKFADYGFNKS 764
            + LR+A+GKK  + M   K +F+ G   N      G ++ +A  I++ +   A Y FNK+
Sbjct: 767  ETLRKAIGKKKLDLMQSFKGQFLEGCMANREFTRQGGNRALAERIWQQMIASASYAFNKA 826

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----FCQDARQFNIQIMPPS 820
            HA  YA+ + Q  W+K HY  EF    + +  ++V+  +K    F ++ R+    ++PP 
Sbjct: 827  HAMGYAMQAVQEIWVKAHYFQEFETGCLAVYGEDVKDGEKKSLVFLRECRRRKQPVLPPD 886

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
            VN     F + D+ I Y L  I G+G +    I++   ++P+  L+D+  R       +R
Sbjct: 887  VNQSQERFSLTDDGIRYGLIDINGIGPSVIPDIIK---NRPYVDLQDYLDRTKKGLGGKR 943

Query: 881  -VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
             V+++LV  GA D  G SR  +L      Q Y  W       K  N  + E+   +DKI 
Sbjct: 944  GVVDNLVKIGAFDWTGQSRSDMLD-----QVYYHWCRMEIAEKKRNSISVEE---TDKIV 995

Query: 940  LEK----------FSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             +K          F  +   V  + E+ ++G + +  P+  Y
Sbjct: 996  WDKWRKNPDKFPRFKFDKPEVVQKIEEDLVGTFITRDPMGPY 1037


>gi|300779106|ref|ZP_07088964.1| DNA polymerase III subunit alpha [Chryseobacterium gleum ATCC 35910]
 gi|300504616|gb|EFK35756.1| DNA polymerase III subunit alpha [Chryseobacterium gleum ATCC 35910]
          Length = 1016

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 228/841 (27%), Positives = 396/841 (47%), Gaps = 76/841 (9%)

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKN------RSEMVSIF 264
            +V  +   F + E+YE H +L A+  +T++S     ++T  HY K+      + ++++ F
Sbjct: 150  MVILHPVTFTTPEEYELHKILRAIDLNTLIS-----KLTEAHYCKDNEMFTDKKKLLAQF 204

Query: 265  SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
               P+ +ENT  I   C F      P      +K   D ++ +   L+  A  GL  R +
Sbjct: 205  QHEPQIIENTKYIVNTCHFDFDFSTPK----NKKHFTDSRENDFELLKKLAYEGLSKRYS 260

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +  +         ++R+D EL VI ++ F  YFLI  D IQ++ +    +  GRGSGA S
Sbjct: 261  EDNLQA-------KERVDKELAVIDQLNFCAYFLITWDIIQYSNRMGF-MHIGRGSGANS 312

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            + +Y + ITDI PL   L FERFLN +R + PDFDID+    RD ++ Y+  KYG + VA
Sbjct: 313  MVSYCIGITDICPLELDLYFERFLNLNRKTPPDFDIDWSWQTRDIILEYIFGKYGKDHVA 372

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
               T    + ++  R+VG+   +P  ++D L          P+       DS        
Sbjct: 373  FCGTNVEFKYRSIFREVGKVFGLPKEELDMLV-------TKPIQ----EHDSN------- 414

Query: 505  DPSVDRLLEISQK-LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563
              SV R +    K LE      S H+ GI+I + P++    +    +   P+ QF+M   
Sbjct: 415  --SVSRQVHYYGKLLEKFPNQRSMHSCGILISEEPITNYSALEMPPKG-FPIVQFDMYTA 471

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL--SLIPFDDHETYHLLTTKGTLGI 620
            E+ GL KFD L  + L  +  ++  + + RG+ +D+  + +  D+ +    L++  T+G 
Sbjct: 472  EEIGLEKFDILSQRGLGTINDTVKLVKEKRGIDIDIRDTSLSKDEAQCNEFLSSGKTIGC 531

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLI 678
            F +ES  MR  L  ++ D  + ++A  S+ RPG   + ++  Y  R N   K    H + 
Sbjct: 532  FYIESPAMRGLLRRLKCDNYKVLVAASSIIRPGVAQSGMMREYIFRHNNPSKFEYFHEVF 591

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK--EEMDKQKERFISGA 736
            +  L ET G+++YQE V++IA    G S  + DVLRRAM  K +    + K K+ F    
Sbjct: 592  EKELGETYGIMVYQEDVIKIALHFGGLSAPDGDVLRRAMSGKGRSLSALQKVKDNFFKSC 651

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             + G  + +++ ++  +  FA Y F K+H+A+YAV SYQ+ ++K ++P+EF+ +++    
Sbjct: 652  KRLGHPEKLSMEVYRQIESFAGYSFCKAHSASYAVESYQSLYLKVYFPIEFMVSAIN-NG 710

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                + + +  +AR     I  P VN       V  + +Y  L  I+ +    A+ I E 
Sbjct: 711  GGFYRTEVYIHEARMSGAAIHNPCVNLSEYQTTVYGSDVYLGLMHIERLELKLAQLISEE 770

Query: 857  -SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
             + +  + SLE+F  R+    +    L+ L+F GA    G  + +LL             
Sbjct: 771  RNQNGEYTSLENFVKRI---PIGIETLQILIFIGAFRFTGKQKHELLIE----------- 816

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE---NEQRVLGFYFSGHPLDVYK 972
             +     H+  F H       +   +  S+E +  RFE   +E  +LGF  S  P D+ +
Sbjct: 817  SRFLLGTHKVPFRHLTLLDEPQKDYQLPSIERN--RFEDAFDEIEILGFPVSFSPFDLLQ 874

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               R   +    + +       +++ A ++S++   T+KG+           + ++   F
Sbjct: 875  TRYRGSVLV---KDLLKFHKCQVKMLAYLISRKHVPTKKGTMYFGTWIDAEGEYFDTAHF 931

Query: 1033 P 1033
            P
Sbjct: 932  P 932


>gi|229105232|ref|ZP_04235881.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-28]
 gi|228678158|gb|EEL32386.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-28]
          Length = 533

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 154/427 (36%), Positives = 252/427 (59%), Gaps = 22/427 (5%)

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +L    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK K
Sbjct: 1    MLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKRK 60

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I  +HP + P+LK T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D++++
Sbjct: 61   IEYLHPDLKPILKRTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQERQ 120

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ A
Sbjct: 121  HFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMTA 180

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T 
Sbjct: 181  LLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRNIGMATV 240

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              ++E    K F+ L +FC R+ +K +  R LE+ V++G  D FG SR  L +SL    +
Sbjct: 241  TALLEERESKMFEDLFEFCLRMPAKFVTERNLEAFVWSGCFDDFGISRTNLWKSLKGALE 300

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGFYFSGH 966
            YA               A + G   D +   K+ V+   + F      E+  LGFY S +
Sbjct: 301  YAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALGFYLSSY 343

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P   Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF +   E
Sbjct: 344  PTAQYVKLAKELEIPSLAQAMRNKKKVQ-RAIVYITSVRVIRTKKLQKMAFITFCDQNDE 402

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 403  MEAVVFP 409


>gi|319954732|ref|YP_004165999.1| DNA polymerase iii, alpha subunit [Cellulophaga algicola DSM 14237]
 gi|319423392|gb|ADV50501.1| DNA polymerase III, alpha subunit [Cellulophaga algicola DSM 14237]
          Length = 995

 Score =  291 bits (745), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 237/884 (26%), Positives = 404/884 (45%), Gaps = 113/884 (12%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           ++L  HS YSL  G  S   +L    A+    +A+TD NN  + + F +K+   GI+PII
Sbjct: 1   MYLNCHSYYSLRFGTFSEIELLKMGQANHIATLALTDINNTSACMNFVRKSKEYGIKPII 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G    ID ++  +    G            +    EG++ L   +S             I
Sbjct: 61  G----IDFRNGAEQLYVG------------IAKNNEGFRELNAFLSF-------HSHKNI 97

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFF----FNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            L  +  +     I+    +   +++  F    +    V   R L F K           
Sbjct: 98  KLPPIAPVFEHAYIIYPFENVLQLEKINFEAHEYIGISVENLRRLPFSK----------- 146

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS---QKD 244
               Y  Y +  V+Q   T            F ++ D+ AH +L A+A++T++S   Q +
Sbjct: 147 ----YKSYTDKLVIQQPVT------------FRNKRDFNAHRLLRAIANNTLLSKLQQTE 190

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R++    + ++ +++  F D P+ + NT  +  +C+      A  + +   ++     
Sbjct: 191 EGRLSEQ--MLSKEKLLEAFQDFPQLVTNTKTLMAQCNVGFGFGASRVSQ--NQQVFGTS 246

Query: 305 KEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
           KEE+ N L+     GL  R      A         +RL  EL  I +M F  YFLI  D 
Sbjct: 247 KEEDFNYLQQLCEDGLPKRYPTRTDAVS-------KRLAVELETIKKMDFVSYFLINHDI 299

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           +++A      +  GRGSGA S+ AY + ITD+DP+   L FERF+NP R+S PDFDIDF 
Sbjct: 300 VKYANSKGY-LHVGRGSGANSIVAYIIGITDVDPIELDLYFERFINPYRVSPPDFDIDFS 358

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              R++V  Y+  ++  +  A + T+ + + +A +R++G+   +P  ++D+LCK      
Sbjct: 359 WKDREDVTAYIFRRF--KNTALLATYNTFKYRAVVRELGKVFGLPKEEIDKLCK------ 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                         F E  L D     +L+ S  ++    + S H+AGI+I D+P+    
Sbjct: 411 ------------GHFSENNLDDMG-KLVLKYSALIKDFPNYLSVHSAGILILDQPIHYYS 457

Query: 544 PMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-- 596
                  +DLP       QF+M   E AG+ KFD LG + L  ++++++ +     +V  
Sbjct: 458 A------TDLPPKGFATVQFDMIIAEDAGIFKFDILGQRGLAKIKEAIEIIKVNRPEVPE 511

Query: 597 -DLSLIPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            D++ I    +D    +LL+    +G + +ES  MR  +  ++ +    ++A  S+ RPG
Sbjct: 512 IDITQIETFKNDANINNLLSRGKAIGAYYVESPAMRGLMCKLKVNDYLGLVAASSVIRPG 571

Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
              + +   Y  R    E+    + ++  ++ ET G+++YQE V+++A   +G  L EAD
Sbjct: 572 VSSSGMKNEYIRRHREPERRKEANAILAQIMPETYGIMVYQEDVLKVANQFAGLDLGEAD 631

Query: 712 VLRRAMGKKIKE--EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
           VLRR M  K +   E  + +E+F S     G    +   +++ +A FA Y F K H+A+Y
Sbjct: 632 VLRRGMSGKFRSRAEFTRVEEKFRSNCKAKGYPDALTTEVWDQIASFAGYAFAKGHSASY 691

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
           AV SYQ+ ++K +YP+EF+ A +          + +  +AR +  QI  P +N       
Sbjct: 692 AVESYQSMYLKCYYPLEFMVAVLN-NGGGFYSTEHYIHEARMWGAQIHAPCINLSDHHNT 750

Query: 830 VGDNRIYYSLAAIKGV-GTTTARHIMEASADKPFDSLEDFCSRV 872
           +    IY     +K +      R + E      F SL+DF  RV
Sbjct: 751 IKGVAIYLGFGYLKNLENLVVQRFLTERQLYGAFKSLDDFIDRV 794


>gi|255535285|ref|YP_003095656.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium
            3519-10]
 gi|255341481|gb|ACU07594.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium
            3519-10]
          Length = 1017

 Score =  291 bits (744), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 224/831 (26%), Positives = 382/831 (45%), Gaps = 76/831 (9%)

Query: 221  SEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            ++++Y  H VL A++++T++S+  +     P+   K   E++  F   P+ +ENT  I  
Sbjct: 160  TKKEYNLHRVLRAISNNTLISKLTEDDCCAPNEVFKPVEELLESFKMYPQIIENTQRILD 219

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
             CSF      P    F        +  +   LR  A  GL+ R  +        ++   +
Sbjct: 220  FCSFEFDFKKPKNRTFFTGN----KASDAQLLRKLAYEGLKKRYPE-------ESEAVLK 268

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            R + EL VI  + FSGYFLI  D IQ++K     +  GRGSGA S+ +Y L ITDI P+ 
Sbjct: 269  RTEKELKVIDDLNFSGYFLITWDIIQYSKSRGF-MHVGRGSGANSIVSYCLGITDICPIE 327

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              L FERFLN  R S PDFDID+    RDE++ Y+  KYG + VA   T    + ++  R
Sbjct: 328  LDLYFERFLNMHRKSPPDFDIDWSWKERDEILNYIFGKYGKDHVAFCGTNVEFKYRSIFR 387

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            +VG+A  +P  ++D L                    ++  +    +  V  + +  Q LE
Sbjct: 388  EVGKAFGLPKEELDALA-------------------TKPMDTHDTNSVVKLVHKYGQLLE 428

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
                  S H+ GI+I + P++    +    +    + QF+M   E  G  KFD L  + L
Sbjct: 429  KFPNQRSMHSCGILISEEPITNYTALEMPPKG-FAIVQFDMHVAEDIGFEKFDILSQRGL 487

Query: 580  TLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYH-------LLTTKGTLGIFQLESSGMRQA 631
              +  ++  + + RG+ VD+     DD  T+         L+   T+G F +ES  MR  
Sbjct: 488  GTINDTVKLIQKNRGITVDI-----DDTHTFKNDQNCNAYLSIGKTIGCFYIESPAMRGL 542

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
            L  ++ D  + ++A  S+ RPG   + ++  Y  R N   +    H +    L ET G++
Sbjct: 543  LRRLKCDNYKTLVAASSIIRPGVAQSGMMKEYIFRHNNPTQFEYFHDVFKEHLGETYGIM 602

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE--EMDKQKERFISGASKNGISKTIAV 747
            +YQE V++IA    G S  + D+LRRAM  K +    + K K+ F     + G  + ++ 
Sbjct: 603  VYQEDVIKIALHFGGLSADDGDILRRAMSGKGRSLAALQKVKDHFFESCREKGHPEKLSQ 662

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++  +  FA Y F K+H+A+YAV SYQ+ ++K +YPVEF+ +++        + + +  
Sbjct: 663  EVYRQIESFAGYSFCKAHSASYAVESYQSLYLKVYYPVEFMVSAIN-NGGGFYRTEVYVH 721

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLE 866
            + R     I  P VN   V+  V    +Y     I+ + +  A  I  E   +  + SLE
Sbjct: 722  ECRMSGGVIHNPCVNKSGVETTVFGVDVYLGFMHIENLESGMACFIFDERIRNGAYTSLE 781

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            +F  RV    +    L++L+F G     G  + +LL     I+     +     N+  + 
Sbjct: 782  NFIKRV---PVGIETLQTLIFVGGFRFTGKQKNELL-----IEARLLMISFKPQNRLPSF 833

Query: 927  FAHEKGTFSDKITLEKFSVEN-SSVRFE---NEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
            F         +  ++++ + N    RFE   +E  +LGF  S  P ++ +   R  G++ 
Sbjct: 834  F---------ETPVQEYELPNLKRNRFEDAFDEIEILGFAVSCSPFELLQTKYRG-GVRA 883

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +  +       +++ A ++S++   T KG+             ++   FP
Sbjct: 884  MD--LIKFHKKQVKMLAYLISRKHVPTTKGTMFFGTWIDADGNYFDTAHFP 932


>gi|330981299|gb|EGH79402.1| error-prone DNA polymerase [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 702

 Score =  291 bits (744), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 181/530 (34%), Positives = 279/530 (52%), Gaps = 25/530 (4%)

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  DRR+EVI+Y+  
Sbjct: 5   GRGSAANSAVCYALGITELNPEQSNLLFERFISRERNEPPDIDVDFEHDRREEVIQYIFR 64

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
           +YG  R A      +     A+RDV + L +P  Q++ L +      A      ++    
Sbjct: 65  RYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPDQINALAE------AFSRWSDSLPSPE 118

Query: 497 RFREARL-AD-PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
           R RE    AD P + R+L ++ +L G  RH S H  G VI + PL  LVP+     +D  
Sbjct: 119 RLREYGFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLVPVENAAMADRT 178

Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLT 613
           + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P DD +TY +++
Sbjct: 179 IIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGQRWTLASLPGDDRKTYEMIS 238

Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKI 671
              T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  Y  R+NG+E  
Sbjct: 239 RADTVGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRRNGEEA- 297

Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKE 730
           V+  P ++ + K T GV ++QEQVM++A L + Y+  EAD LRRAM   K    ++  +E
Sbjct: 298 VTYPPKLESVFKRTLGVPLFQEQVMEVAILAADYTPGEADELRRAMAAWKRHGGLEPHRE 357

Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
           R  +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W+K H P  F  A
Sbjct: 358 RLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPAAFTCA 417

Query: 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF---------KVGDNRIYYSLAA 841
            +           +  QDAR+ +I+I P  V     D          +  +  I   L  
Sbjct: 418 LINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDRTRNLAIRLGLRM 477

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
           ++      A  I  A A +PF    D   R +   L+ R  E+L  +GAL
Sbjct: 478 VRSFREDDALRIEAARAKRPFVDATDLTLRAE---LDSRAAEALADSGAL 524


>gi|126724469|ref|ZP_01740312.1| DNA polymerase III, alpha subunit [Rhodobacterales bacterium
           HTCC2150]
 gi|126705633|gb|EBA04723.1| DNA polymerase III, alpha subunit [Rhodobacterales bacterium
           HTCC2150]
          Length = 1009

 Score =  291 bits (744), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 236/861 (27%), Positives = 407/861 (47%), Gaps = 79/861 (9%)

Query: 3   QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA------- 55
           +Y ++  +F  L + ++++ L G       + + A    PA+A+ D N++          
Sbjct: 36  EYSDRLMAFSELCITTNFTFLTGGSHGEEYVQQGAGFGMPAVAVADLNSVAGVVRAHCEA 95

Query: 56  ------LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                 +   + A A  + P     +D  +  ++  T +       +P   L+  T  GY
Sbjct: 96  REVARLIALRRVADADPVGPARPDDIDAPVSFDIYATPR------VIPGARLM--TDLGY 147

Query: 110 QRLIELVSRM------YLLDQGK--QSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAF 159
           Q     ++R+       +L +G+   +   CL  L +I   G  L++L    S  +++A 
Sbjct: 148 QVTALPLNRLGWGNLCRMLSEGRLRAAKGECLIRLDDIVRWGGDLVLLLHPPSA-MNKAT 206

Query: 160 FFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSL 218
                     RL   ++ FG  + V L   + G DR R  +  + A    +P VA+   +
Sbjct: 207 GAREWLAQSARL---RRRFGAEMSVVLAPLYDGQDRARFQRHAKWAADLGVPTVASARPI 263

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
               +  +  DVL AV  S  V    R  +   +  L+  +EM  +F    +A++   EI
Sbjct: 264 MHIAQRRKLVDVLTAVRTSCKVIDLGRAAQANAEQRLRPEAEMRRLFKGHEDAVDRAGEI 323

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV-RLAQGAIAKGYHA-- 334
           A RC F L               D+++ E  +E+         + RLAQ  +   Y +  
Sbjct: 324 AARCQFSL---------------DELRYEYPSEVSGGETPTERLARLAQEGLRWRYPSGT 368

Query: 335 -QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
                + L  EL +I ++++  YFL V D + +A+   I +  GRGS A SV  + L +T
Sbjct: 369 PDRVTKLLAHELTLIGKLEYEPYFLTVHDIVAFARSRGI-LCQGRGSAANSVVCFLLGVT 427

Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            + P   +++FERF++  R   PD D+DF  +RR+EVI+++  +YG  R     T    +
Sbjct: 428 SVSPEVGTMVFERFVSEARNEPPDIDVDFEHERREEVIQHIYERYGRHRAGLCATVVHYR 487

Query: 454 AKAALRDVGRALQMPYSQVDRLCKLI----PNDPAHPVSLQAIADDSRFREARL--ADPS 507
            K A+R+VG A+ +    V  L   +     + PA          D R RE  L  ADP 
Sbjct: 488 GKRAIREVGHAMGLSDDVVAALSSQMWGWGASGPA----------DERLREIGLDPADPK 537

Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
           + ++L++  +++G  RH S H  G +I +  L +LVP+      D  V  ++   I+  G
Sbjct: 538 LMQVLDLVGQVQGFPRHLSQHVGGFIITEGRLDELVPVENATMEDRTVICWDKDDIDTLG 597

Query: 568 LIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
           ++K D L L  L+ ++K+ D +      + +L+ +P +D   Y +L    ++G+FQ+ES 
Sbjct: 598 ILKVDVLALGMLSCIRKAFDLIQTHHQTEFNLATLPPEDPAVYDMLCKADSVGVFQVESR 657

Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
                L  M+P C  D++  V++ RPGPI  D +  Y  R+NG+E +      +  +L +
Sbjct: 658 AQMNFLPRMRPRCFYDLVIEVAIIRPGPIQGDMVHPYIRRRNGEEPVSFPSDELGAVLSK 717

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG--KKIKEEMDKQKERFISGASKNGIS 742
           T GV ++QEQ MQIA + +G++  EAD LRRA+   KK+  ++    +RFI G  KNG  
Sbjct: 718 TLGVPLFQEQAMQIAIIGAGFTPDEADRLRRALATFKKLG-KVSSFYDRFIRGMLKNGYE 776

Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
           +  A   F  +  F  YGF +SHAA++A++ Y +AW+K H+P  F  A +  +       
Sbjct: 777 RDFAERCFSQIEGFGSYGFPESHAASFALLVYASAWIKCHHPGIFACALLNSQPMGFYAP 836

Query: 803 KKFCQDARQFNIQIMPPSVNT 823
            +  +DAR+  +++ P  +N 
Sbjct: 837 AQIVRDAREHGVKVRPVCINA 857


>gi|260469704|ref|ZP_05813865.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum
            WSM2075]
 gi|259028524|gb|EEW29839.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum
            WSM2075]
          Length = 1118

 Score =  290 bits (743), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 269/1046 (25%), Positives = 457/1046 (43%), Gaps = 114/1046 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +    + S++S L GA     ++         AI + D N +   +   Q+A    +   
Sbjct: 9    YAEFGIQSNFSFLRGASKPEELVVAAKLLGFSAIGLADRNTVAGVVRAWQQAKVEKLSYH 68

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             GC+L                     P I+      +G+  L  ++++  L D+ ++   
Sbjct: 69   PGCRLVF---------------CDGTPDILAYPRNRKGWGHLCRMLTQANLRDETEKGAT 113

Query: 131  IC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL---FGDRLYVNL 186
            +   S L E G   L+ L          A   +    AE  L   ++L   FG  L + +
Sbjct: 114  LLQRSDLLEWGD--LMSL----------AVLPDPMAGAEDSLALIRQLKDRFGRALRLGV 161

Query: 187  Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD- 244
               + G DR+R  Q    A +  +PL+ATN+ L+ + E     DVL A+  +T  ++   
Sbjct: 162  SPDYAGNDRFRIEQAAAFAESAGIPLMATNDVLYHTAERRPLQDVLTAIRLNTPAAEVGL 221

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            +     + +LK   EM  +F   P+AL  T+  A   +F L                D+Q
Sbjct: 222  QLTANAERHLKPPMEMARLFRRHPQALTETLRFAEELTFSLS---------------DLQ 266

Query: 305  KEEENELRNKAV---AGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYFL 358
                +E     +   A LE RLA+   A+ Y A       +R+  EL +I R+ ++ YFL
Sbjct: 267  YNYPDEPTESGLGPQAELE-RLAREGAARRYPAGVPASVIKRIGEELALIERLNYARYFL 325

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
             V D +++A+  +I +  GRGS A S+  + + IT++ P +   LFERF++ +R   PD 
Sbjct: 326  TVHDIVKYARSQDI-LCQGRGSAANSIVCFCIGITEVGPDKIDTLFERFISEERNEPPDI 384

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF  ++R+ VI+Y+  KY  +R A      S + ++ALR+V +A+ +       L   
Sbjct: 385  DVDFEHEKRETVIQYIYEKYSSKRTALAAAVISYRGRSALREVSKAMGLSEDVRASLSGS 444

Query: 479  IPNDPAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            I        S   + +    +EAR       DP    ++E + ++ G  RH S H  G V
Sbjct: 445  IWG-----WSTSELGE----KEARAGGLDQTDPVSRHVMERANEIMGFPRHLSQHVGGFV 495

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR- 592
            I    L ++VP+ +    +  + +++   ++   ++K D L L  LT LQ++   L +  
Sbjct: 496  ITRDRLDEIVPIVKTAMDERKMVEWDKDDLDAVKILKVDILALGMLTCLQRAFTLLTEHY 555

Query: 593  -------GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
                   G    L+ +P +D + Y ++    T+G+FQ+ES      L  ++P    D++ 
Sbjct: 556  PKARDPYGQPYVLATLPPEDKQVYKMICRADTIGVFQIESRAQMSMLPRLRPQNFYDLVI 615

Query: 646  LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
             V++ RPGPI  D +  Y  R+ GKE+     P +  +L +T GV ++QEQ M+IA +  
Sbjct: 616  EVAIVRPGPIQGDMVHPYLRRRQGKEEAEYPKPELKEILGKTLGVPLFQEQAMKIAIVAG 675

Query: 704  GYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            G+   EAD LRRAM   K    +   ++R I G    G +K  A   F+ +  F +YGF 
Sbjct: 676  GFRPGEADELRRAMATFKRTGTIGNYRQRMIDGMMGKGYTKDFAERCFKQIEGFGEYGFP 735

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            +SHAA++A++ Y + W KT YP  F AA +  +     +  +  +DAR   + I    VN
Sbjct: 736  ESHAASFALLVYASCWFKTFYPDVFCAAILNSQPMGFYQPAQLVRDARDHGVDIREVDVN 795

Query: 823  TPCVDFKVGD-----NRIYYSLAAIKGVGTTTA------RHIMEASADKPFDSLEDFCSR 871
                D  + +      RI    A ++GV  T        R I   S ++    +E F +R
Sbjct: 796  FSTWDCTLEEAPFDPARILPRHAEMRGVIETAHAVRLGFRQIKGLSKER----MEQFVTR 851

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRM---QLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
                 L+ R    +     LD     R+      +SL   ++ A W  +    K     A
Sbjct: 852  RGDGYLSVR---DVWLRSGLDVDEIERLAQADAFRSLGLDRRDALWAVRALDGKS----A 904

Query: 929  HEKGTFSDKITLEKFSVENSSV--------RFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
             EK    D+  L    +E  +            ++ R LG     HP+   +  L + G+
Sbjct: 905  AEKLPLFDQPALRLRELEPETKLPKMPLGEHVIHDYRSLGLSLKAHPVAFLRGRLDRAGV 964

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQ 1006
                   +   G  + +A +V+ +Q+
Sbjct: 965  TPNANLSSVRDGRRVSVAGLVLVRQR 990


>gi|120611340|ref|YP_971018.1| DNA polymerase III subunit alpha [Acidovorax citrulli AAC00-1]
 gi|120589804|gb|ABM33244.1| DNA polymerase III, alpha subunit [Acidovorax citrulli AAC00-1]
          Length = 1076

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 267/1035 (25%), Positives = 458/1035 (44%), Gaps = 92/1035 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S   GA     ++++ A     A+A+TD  ++   +     A   G++
Sbjct: 20   PGYAELHCLSNFSFQRGASHPIELVERAAELGYAALALTDECSVAGVVRAHTAARRCGLK 79

Query: 69   PIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY-LLDQGK 126
             I+G +    D++                  +V L     G+  L E +S    +  +G+
Sbjct: 80   LIVGSEFACGDVR------------------LVALARDETGWGNLCEFISDARRIAPKGE 121

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDR--AFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              V     + +  G E L+      +   DR  A       +A  +     +  G   +V
Sbjct: 122  YRVHAGSDFARLRGCEVLV------APRRDRLSALEPRGVGLAVAQACAPLRAQGIHPWV 175

Query: 185  NLQRHRGYDRYRESQVVQLA-YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             ++ H   D     + ++ A    +LPLVA  +      +     DV+ AV     VS+ 
Sbjct: 176  AVELHTAPDDAAWLEALERAGRALDLPLVAAGDVHMHVLQRKPLQDVVTAVRLGRPVSEC 235

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                +   +  L+ R  +  I+   P  L  T+E+A RC+F L     I  R+  +   D
Sbjct: 236  GFALQAHGERRLRPRMRLAGIYP--PALLAATLEVAARCTFSLD---EIRYRYPRENVPD 290

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 E  L     AG   R  QG         + R ++  EL +IA  ++  YFL V D
Sbjct: 291  GMTPGEA-LAAYTEAGARERYPQGV------PPEVRAQIAKELELIAHCRYEMYFLTVHD 343

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             ++ A++  I +  GRGS A S   + L IT +DP +  LLFERF++ +R   PD D+DF
Sbjct: 344  IVREARRRGI-LCQGRGSAANSAVCFCLGITAVDPTKTQLLFERFISKERDEPPDIDVDF 402

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK---LI 479
              DRR+EVI+Y+  KYG ER A      + + ++ALRDVG+AL +  + VD   K     
Sbjct: 403  EHDRREEVIQYIYRKYGRERAAIAAVVITYRTRSALRDVGKALGVAPAVVDAFAKDHHWF 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              D    ++ + + + +    A +A  +    LE++ +L G  RH S H  G V+ +  L
Sbjct: 463  DED----IAAERLQELAAGLGAPIAAHTAALWLELAHELRGFPRHLSQHVGGFVLTEGKL 518

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
            ++LVP+         + Q++   ++   L+K D L L  L+ L+++LD  A  RG   +L
Sbjct: 519  TRLVPVEPASMDGRSIIQWDKDDLDDMHLMKVDVLALGMLSALRRALDLRAALRGQAWEL 578

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D  TY ++    T+G+FQ+ES      L  ++P  + D++  V++ RPGPI   
Sbjct: 579  ADIPREDPATYDMICAADTVGVFQIESRAQMSMLPRLKPRELYDLVVEVAIVRPGPIQGG 638

Query: 659  VVY-----NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            +V+       R    +  V  H  + P L+ T GV I+QEQVMQIA + + ++   AD L
Sbjct: 639  MVHPYLQARERMARGDGFVLEHKKLGPALERTLGVPIFQEQVMQIAMIAADFTPGMADDL 698

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RR+M   K +  + + ++  + G   NG S   A  I++ +  F +YGF +SHA ++A++
Sbjct: 699  RRSMAAWKRRGGVHRFEQALMEGMRNNGYSDDFAQRIYQQMLGFGEYGFPESHAYSFALL 758

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP-------------- 818
            +Y ++W K H P  FLAA +  +        +   DAR+  ++++P              
Sbjct: 759  AYASSWFKRHEPACFLAALLNSQPMGFYTPSQLVHDARRHGLRVLPADAAHSDWDSTLEG 818

Query: 819  PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
            P+V  P    +     +   L  + G G   A  +M A A  PF  ++D   R    + +
Sbjct: 819  PAVPLP--GLQQAQPAVRLGLRLVAGYGPEAAARLMRARAASPFAGVQDLALRARQDRQD 876

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
             + L +     +L   G+ R Q+  +    +  A   E      HE   A  +    ++I
Sbjct: 877  LQALAAADALRSLA--GHRRQQMWDAAAQRRAPALLQE---APVHEAPLALPEAPEGEEI 931

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
              +  +               G     HP+ + +  +    I+  +   A   G  +R  
Sbjct: 932  VFDYAAT--------------GLTLRRHPMALLRERMAGWRIQAAQALQAVPHGRRVRAC 977

Query: 999  AMVVSKQQKKTRKGS 1013
             +V  +Q+  + KG+
Sbjct: 978  GIVTVRQRPGSAKGT 992


>gi|86134487|ref|ZP_01053069.1| DNA polymerase III alpha subunit [Polaribacter sp. MED152]
 gi|85821350|gb|EAQ42497.1| DNA polymerase III alpha subunit [Polaribacter sp. MED152]
          Length = 1007

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 235/884 (26%), Positives = 409/884 (46%), Gaps = 92/884 (10%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           ++L  H+ YSL  G  S   +L     +    IA+TD NN  + + F Q+A    I+P+I
Sbjct: 1   MYLNCHTYYSLRFGTFSETELLQLAVKNNINCIALTDINNTSACMNFVQQARKTTIKPVI 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G    +D ++                  V +    +G+Q++   +S      + K +   
Sbjct: 61  G----VDFRNG------------NSQQFVAIAKNNKGFQQINAYLSSFL---ESKTNFPN 101

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK--LFGDRLY-VNLQR 188
              +L ++     I+       P ++A         E  L +FKK    G  +  +N  R
Sbjct: 102 KPKYLADV----FIVY------PFEKAL--------ELNLTSFKKNEFVGVSVAEINKLR 143

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ--KDRP 246
               + Y++  V+Q   T              +++D+ AH +L A+  + ++S+  K   
Sbjct: 144 FSYLNNYKDKIVIQQQVTVR------------NKKDFNAHRLLRAIDKNILLSKLPKTEE 191

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +  D       ++ + F D    ++NT  +  +C+     +     + +E   +    +
Sbjct: 192 CLETDIMFA-YQDLKNHFKDFENVIQNTENLLNQCTINFGFNENRTNQNLEVYTNSF--D 248

Query: 307 EENELRNKAVA-GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
           E+ +L  K  A  L+ R A          +    RL+ EL VI  +KF  +FLI  D I 
Sbjct: 249 EDCQLLKKLCAENLKKRYANPT-------EKVYNRLEKELKVIIDLKFVSFFLINYDIIS 301

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +AK+NN     GRGSGA S+ AY + ITD+DP+   L FERF+NP R S PDFDIDF   
Sbjct: 302 FAKRNNF-FHVGRGSGANSIVAYIIGITDVDPIELDLYFERFINPFRASPPDFDIDFSWK 360

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN--DP 483
            RD V  Y+ N++  + VA + T+ + + +A +R++G+   +P  ++D+L K +    + 
Sbjct: 361 DRDIVTNYIFNRF--KNVALLATYVTFKYRAVVRELGKVFGLPKEEIDKLSKGVSTLGNY 418

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL---- 539
           +    L    ++         D     +L+  + +EG   + S H+AGI+I D+P+    
Sbjct: 419 SRSQKLANTTNNLNKENKSQFDSMAHLVLKYGKLIEGFPNYVSVHSAGILILDKPIHYFS 478

Query: 540 -SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---VK 595
            + L P       + P  QF+M   +  G+ KFD LG + L  ++ +L  + +      +
Sbjct: 479 ATSLPP------KNFPTVQFDMNIADDVGIFKFDILGQRGLAKIKDALILIKENNPNDPE 532

Query: 596 VDLSLIPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
           +D++ I    +D+   +LL T G +G + +ES  MR  ++ +Q +    ++A  S+ RPG
Sbjct: 533 IDITDIERFKNDNNINNLLKTGGAIGAYYVESPAMRGLMQKLQTEDYLGLVAASSIIRPG 592

Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
              + +   +  R    E   + +P++  ++ ET GV++YQE VM++A   +  +L EAD
Sbjct: 593 VSSSGMKDEFIKRHRYPEHRKNANPILLKIMPETYGVMVYQEDVMKVANQFADLTLGEAD 652

Query: 712 VLRRAMGKKIK--EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
           VLRR M  K +   E    + +FI    K G    +   ++  +  FA Y F K H+A+Y
Sbjct: 653 VLRRGMSGKYRSVSEFKAVENKFIENCRKKGFKDELIFEVWNQIKSFAGYAFAKGHSASY 712

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
           AV SYQ+ ++K +YP+EF+ A +          + +  +A+     I  P +NT      
Sbjct: 713 AVESYQSLFLKCYYPIEFMTAVLN-NGGGFYSTEHYIHEAKMRGATIELPCINTSDHPNI 771

Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRV 872
           V    IY     +K +       I+     +  F+SL+DF  RV
Sbjct: 772 VKGKTIYLGFGYLKNLEHLLIERILSNRQTEGLFNSLDDFLDRV 815


>gi|149203459|ref|ZP_01880429.1| DNA polymerase III, alpha subunit [Roseovarius sp. TM1035]
 gi|149143292|gb|EDM31331.1| DNA polymerase III, alpha subunit [Roseovarius sp. TM1035]
          Length = 965

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 272/1004 (27%), Positives = 430/1004 (42%), Gaps = 83/1004 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS-----------ALEFS 59
           F  L   S+++ L GA      +   AA     +AI D N++             A E +
Sbjct: 11  FAELSATSNFTFLTGASHPEEYIRHAAALGLSGVAIADVNSVAGIVRAHAAAREIAREVA 70

Query: 60  QKACAAGIQPIIGCQLDI-----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            +      Q  IG          D  +  ++    +        I  L     G+  L  
Sbjct: 71  ARQALEARQGPIGPPAPQPAAPPDWANCPRLIPAARLVLREGIEITALPVNRGGWASLCR 130

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
           L+S    L + +     C   L ++  G  GL +L   + G   RA+        + ++L
Sbjct: 131 LIS----LGRQRAIKGACDLGLADVLAGAAGLHLLVHPAPG---RAW--------QAQVL 175

Query: 173 TFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
                +G  + + L  R+ G D  R  ++  LA    LP VA    +          DVL
Sbjct: 176 QLAARWGGSVALLLSPRYDGRDPARFERLTGLAARLGLPTVAAAAPILHRGYRRRLADVL 235

Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            A+     V +  R  +   +  L++  EM  +F+    A+     +A R  F L     
Sbjct: 236 SAIRLGVTVDRLGRHALRNAEQRLRSEEEMRRLFAGHEGAVSRAAALAARLDFSLDELRY 295

Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             P  + +     Q+     LR  A AGLE R   GA A+       R  ++ EL +IA+
Sbjct: 296 EYPSEVAENETPAQR-----LRRLAEAGLEWRYPGGAPAR------VRGMMEHELALIAK 344

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           +++  YFL V D + +A+   I +  GRGS A SV  Y L +T + P   +++FERF++ 
Sbjct: 345 LRYEPYFLTVHDVVAFARSRGI-LCQGRGSAANSVVCYCLGVTSVSPEIGTMVFERFVSE 403

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            R   PD D+DF  +RR+EVI+++  +YG  R     T    + K A+R+VGRA+ +   
Sbjct: 404 ARDEPPDIDVDFEHERREEVIQWIYERYGRHRAGLCATVIHYRTKRAIREVGRAMGLSED 463

Query: 471 QVDRLCKLIPNDPA----HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
            +  +   I          P  L  I  D R       DP + R L + +++ G  RH S
Sbjct: 464 LLGAMTSQIWGHGGEGALEPARLAEIGLDPR-------DPRLARTLALIREIIGFPRHLS 516

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            H  G VI +  L +LVP+         V  ++   I+  G++K D L L  LT ++K+ 
Sbjct: 517 QHVGGFVITEGRLDELVPIENASMEGRTVICWDKDDIDALGILKVDVLALGMLTCIRKAF 576

Query: 587 DFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
           D L Q RG    L+ +P +D + Y +L+   +LG+FQ+ES      L  M+P    D++ 
Sbjct: 577 DLLGQHRGQVYSLATLPPEDAQVYEMLSRADSLGVFQVESRAQMNFLPRMRPRTFYDLVI 636

Query: 646 LVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            V++ RPGPI   +V+    R+NG+E +      +  +L +T GV ++QEQ MQIA + +
Sbjct: 637 QVAIIRPGPIQGDMVHPFIRRRNGEEAVSFPSDDLGRVLGKTLGVPLFQEQAMQIAIIGA 696

Query: 704 GYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
           G++  EAD LRR++   K    + + + RF+ G   NG     A   F  +  F  YGF 
Sbjct: 697 GFTPEEADRLRRSLATFKKHGNVSEFRARFLRGMQANGYDSDFAERCFSQIEGFGSYGFP 756

Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           +SHAA++A + Y +AW+K H+P  F  A +  +        +  +DAR+  + + P  +N
Sbjct: 757 ESHAASFAHLVYASAWLKCHHPAIFACALLNSQPMGFYAPAQIVRDAREHGVTLRPVCIN 816

Query: 823 TPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD-SKK 876
               D  +     G   +      IKGV    A  I  A  +  +   ED   R   +  
Sbjct: 817 ASYWDNTIEPDSRGRLALRLGFRQIKGVAQDEADWIAAARGNG-YVGPEDVWRRAGVAPA 875

Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
              R+ E+ VFA      G SR   L     I          R    E I   E      
Sbjct: 876 ALTRLAEADVFA----ALGLSRRDALWQARAIGAERPLPLFARDIDGEGIV--EPAAHLP 929

Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
            +TL +  VE+ +         L      HPL + + IL   G+
Sbjct: 930 AMTLGEEVVEDYT--------ALRLSLRAHPLALLRHILTPPGL 965


>gi|317472885|ref|ZP_07932191.1| PHP domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899605|gb|EFV21613.1| PHP domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 475

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 179/479 (37%), Positives = 276/479 (57%), Gaps = 24/479 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SF HL VH+ YSLL+G+  +  ++         +IAITD   ++  ++F + A A GI+P
Sbjct: 2   SFTHLHVHTEYSLLDGSSKIKELVHHTKELGMDSIAITDHGVMYGVIDFYKAAKAEGIKP 61

Query: 70  IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           I+GC++ +       K   QG + +     +VLL     GY  L+++VSR +  +     
Sbjct: 62  ILGCEIYVTPGSRFEKEARQGSSNYF---HLVLLAENDRGYHNLMKIVSRGFT-EGFYYK 117

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187
            R+    L+   +EGLI L+    G I         + A++  L F++++G    ++ LQ
Sbjct: 118 PRVDYEVLERY-SEGLIALSACLGGEIPTYIREGDYEKAKETALRFERIYGKGNFFLELQ 176

Query: 188 RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H   ++    S +++++    + LVATN+  +   ED E HD+L+ +     V+ +DR 
Sbjct: 177 DHGISEQTTVNSALIKMSKETGIELVATNDIHYTFAEDVEPHDILLCIQTGKKVADEDRM 236

Query: 247 RVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           R     +YLK+  EM  +F    +A+ENT +IA RC+  +      +P+F   E D    
Sbjct: 237 RYEGGQYYLKSPEEMERLFPYARQAVENTGKIAERCNVEIIFGEQKVPKFDVPEGDT--- 293

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              + LR         +L +  I + Y    ++ R+RL+FEL  I  M +  YFLIV DF
Sbjct: 294 -STSYLR---------KLCEEGICRRYDDVTEELRERLEFELKTIENMGYVDYFLIVWDF 343

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           I +AK++ I VGPGRGS AGS+ +Y L ITDI+P+++ LLFERFLNP+R+SMPD DIDFC
Sbjct: 344 IHYAKEHGIAVGPGRGSAAGSIVSYCLEITDIEPIKYQLLFERFLNPERVSMPDIDIDFC 403

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            +RR EVI YV  KYG ++V QIITFG++ A+A +RDVGR L +PY++VD + K++PN+
Sbjct: 404 YERRQEVIDYVVEKYGKDKVVQIITFGTMAARAVIRDVGRVLDIPYAKVDGIAKMVPNE 462


>gi|146301508|ref|YP_001196099.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
 gi|146155926|gb|ABQ06780.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
          Length = 1018

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 203/706 (28%), Positives = 341/706 (48%), Gaps = 55/706 (7%)

Query: 211 LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI------F 264
           +V      F S+ +Y+ H +L A+  + + S     R+ P+   +    M+ +      +
Sbjct: 150 MVVLQPVTFRSKTEYQLHKILRAIDLNVLGS-----RLKPEDCCRASDTMMRLEKLLFFY 204

Query: 265 SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
              P+ + NT  I  +C+F      P   ++  +     ++ +   L   A  GLE R  
Sbjct: 205 QHYPQIIANTEYIIEQCNFEFDYSTPKNKKYYTQN----RQTDIELLTILAQQGLEWRYG 260

Query: 325 QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
           +     G        R+  EL VI +++FSGYFLI  D I+++      +  GRGSGA S
Sbjct: 261 KDNTEAG-------ARMIKELKVIDQLEFSGYFLITWDIIRYSSSKGF-LHIGRGSGANS 312

Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
           + AY L ITDI PL   L FERFLN +R S PDFDID+    RD ++ Y+ ++YG + VA
Sbjct: 313 IIAYCLGITDICPLELDLYFERFLNLNRKSPPDFDIDWSWKERDVILEYIFSRYGADHVA 372

Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
              T    + ++  R+VG+   +P  ++D L K       +P++L               
Sbjct: 373 FCGTNVEFKYRSIFREVGKVFGLPKEELDALAK-------NPMNLHP------------T 413

Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
           +  V ++ +    LE      S H+ GI+I + P++   P+    +   P+  F+M   E
Sbjct: 414 NKVVRQVQQYGMLLEKYPNQRSMHSCGILISEEPITNYTPLEMPPKG-FPIVLFDMHTAE 472

Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL--SLIPFDDHETYHLLTTKGTLGIF 621
             GL KFD L  + +  +  S+  + +  G+++++  + I  D+      L    T+G F
Sbjct: 473 DIGLEKFDILSQRGIGHIDDSVKVIEKNTGIRINIRDTSISKDEALCNQFLAAGKTIGCF 532

Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLID 679
            +ES  MR  L  ++    + ++A  S+ RPG   + ++  Y  R N  +K    HP+  
Sbjct: 533 YIESPAMRGLLRRLKCGDYKTLVAASSIIRPGVAQSGMMKEYIYRHNHPDKFEYFHPVFK 592

Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK--IKEEMDKQKERFISGAS 737
             L ET G+++YQE V++IAQ   G   ++ D+LRRAM  K   K  + K K+ F +  +
Sbjct: 593 EQLGETYGIMVYQEDVIKIAQHFGGLPAADGDILRRAMSGKGRSKAALQKVKDNFFASCA 652

Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             G  + ++  I+  +  FA Y F K+H+A+YAV SYQ+ ++K +YP+EF+ A +     
Sbjct: 653 AQGHPQALSAEIYRQIESFAGYSFCKAHSASYAVESYQSLYLKVNYPIEFMVAVIN-NQG 711

Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
              + + +  +AR     I PP VN    +  +    IY     ++G+   TA  I E  
Sbjct: 712 GFYRTEVYVHEARMSGGIIHPPCVNKSGYETTLYGKNIYLGFMHLQGLEYKTAVMIEEER 771

Query: 858 A-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             +  + SLEDF +R+    +    ++ L+F GA    G ++ QLL
Sbjct: 772 CKNGDYTSLEDFINRI---PIGIEGVQILIFIGAFHFTGKTKNQLL 814


>gi|56461666|ref|YP_156947.1| DNA polymerase III alpha subunit [Idiomarina loihiensis L2TR]
 gi|71151826|sp|Q5QUT9|DNAE2_IDILO RecName: Full=Error-prone DNA polymerase
 gi|56180676|gb|AAV83398.1| DNA polymerase III alpha subunit [Idiomarina loihiensis L2TR]
          Length = 1039

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 266/1054 (25%), Positives = 461/1054 (43%), Gaps = 155/1054 (14%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS L  A S   ++ +       AIAITD  ++   ++  Q++ A  I+ +
Sbjct: 16   FAELHSLSHYSFLRSAASPEELVRRADDLGYAAIAITDECSVAGIVKAYQESKARDIKLV 75

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL----DQGK 126
            +G +  +                P V ++V+L  T E Y    EL  ++ L     ++G 
Sbjct: 76   VGSEFRV----------------PEVGTLVVLAPTREAY---AELCKKITLFRSRSEKGH 116

Query: 127  QSVRI---------CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
                I         CL   Q   ++  ++  G                  EK     K +
Sbjct: 117  YQANIDDFFDGFSQCLLLWQPDFSQAQLLAIG------------------EK----LKSV 154

Query: 178  FGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            +  R ++  +RH   D  R  Q +V+L    ++ +         + E    +D+L A+ H
Sbjct: 155  WQQRFWLLYERHYQADDERAFQAMVELQQAVKVKVTCAGGVCMATIEQQPLYDILNAIQH 214

Query: 237  S-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
              ++  Q        +H+L++ SE+   +    + L  T+ IA++C F L          
Sbjct: 215  GGSLAHQPGLASNNAEHHLRSLSELQQCYPQ--KWLAETLVIAQQCQFCL---------- 262

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF------------ 343
                         +ELR +  A L   + +G  A GY  Q   Q   +            
Sbjct: 263  -------------SELRYEYPAEL---VPEGMSASGYLKQLTEQGARWRYPQGVPESIKA 306

Query: 344  ----ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
                EL++I    +  +FL + D +++A++  I +  GRGS A SV  Y L IT ++P +
Sbjct: 307  LYLKELSLIKEQSYEPFFLTIHDLVRFAREQGI-LFQGRGSAANSVVCYCLGITAVNPAQ 365

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              +LFERF++ +R   PD D+DF  +RR+EVI+Y+  KYG +R A   T  + + K+A R
Sbjct: 366  IQVLFERFISKERNEPPDIDVDFEHERREEVIQYIYRKYGRQRAALAATVITYRFKSAFR 425

Query: 460  DVGRAL-----QMPY--SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
            DVG+AL     Q+ Y    +DR  K              + +  R +           LL
Sbjct: 426  DVGKALGFSEQQLQYFRRNLDRRDKEQSWQQQLVQQHPEVTNSVRGQH----------LL 475

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            + +++L G  RH S H  G VI    LS+LVP+     +D  V Q++   +E  GL+K D
Sbjct: 476  QFTEQLMGTPRHLSQHVGGFVIAADDLSRLVPVENASMTDRTVIQWDKTDLESLGLLKVD 535

Query: 573  FLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
             L L  LT L+K L  +  R   ++ ++ IP +D   Y  L T  ++GIFQ+ES      
Sbjct: 536  VLALGMLTALRKMLALINLRYDQQLTMATIPQEDSRVYQQLQTADSMGIFQIESRAQMNM 595

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVI 689
            L  ++P    D++  +++ RPGPI   +V+    R+ G E++      +  +L+ T GV 
Sbjct: 596  LPRLKPKTFYDLVIQIAIVRPGPIQGDMVHPFLRRRAGLEEVDYPSDEVKSVLERTLGVP 655

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVN 748
            I+QEQV+++A + +G+S  EAD LRRAM    +   + + +++ I+G  + G  +  A  
Sbjct: 656  IFQEQVIKLAMVAAGFSGGEADQLRRAMASWGQNGHLTRFEDKLINGMLERGYKQEFAER 715

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            +F  +  F  YGF +SH+A++A ++Y ++W KT++P  F    +           +  QD
Sbjct: 716  LFRQICGFGQYGFPESHSASFANLAYVSSWFKTYHPAAFYVGLLNSLPMGFYSASQLVQD 775

Query: 809  ARQFNIQIMPPSVNTPCVDF-------KVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
            A++  +  +   +N    ++          D  +   L  I+G+  +  +H +    +  
Sbjct: 776  AQRHGVAFLAADINASDWNYCWLPKEDTNSDETVRMGLRQIQGLSESRIKHTLMQRPEDG 835

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F S+ +    +    L    + +L  A AL      R Q           A W   + ++
Sbjct: 836  FTSMHE----LRKSGLRDSDINALARADALKSIAGHRHQ-----------AHWQSLSMSD 880

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK--PILRKMG 979
            +   +F + K   + ++       +N    +E+    LG     HPL + +  P L+   
Sbjct: 881  QQMPLFENVKDRPARQLPAPD-EPDNIKADYESTGLTLG----RHPLALLRNNPELKNCV 935

Query: 980  IKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKG 1012
            +      + T R G  + LA +V  +Q+  TR G
Sbjct: 936  LAS---DLMTCRSGQVLTLAGLVTCRQRPGTRSG 966


>gi|241206898|ref|YP_002977994.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv.
            trifolii WSM1325]
 gi|240860788|gb|ACS58455.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM1325]
          Length = 1154

 Score =  288 bits (737), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 230/861 (26%), Positives = 393/861 (45%), Gaps = 69/861 (8%)

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD---RPR 247
            G DR   + +  LA  + +PL+ATN  L+   E     DV++A+     +SQ      P 
Sbjct: 195  GRDRQVFAVLAMLAARNRVPLIATNQPLYHHPERRPLSDVVIAIREHVQISQAGFLLAPN 254

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YLK+  EM  IF + P A+ENT     R +F L+      P     E D  +  +
Sbjct: 255  A--ERYLKDSREMARIFREYPNAIENTQTFFDRLTFSLKELEHNYP----PENDPGETPQ 308

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E  L     AG   R  +G   K         ++++EL++I + K++ YFL V   IQ A
Sbjct: 309  ET-LERLTRAGAARRYPKGIPPK------VAPQIEYELDLIKKKKYASYFLTVHRIIQHA 361

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     +  GRGS A SV  Y L IT+++P + +LLF+RF++ DR   PD D+DF  DRR
Sbjct: 362  RYELKVLCQGRGSAANSVICYCLEITEVNPEKSTLLFDRFISMDRDEPPDIDVDFEHDRR 421

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+++  +YG E         + + ++A R+V +A  +       +  L+       +
Sbjct: 422  EEVIQFIYKRYGIEHAGLTAGVTTYRTRSAGREVSKAFGLSEDVQSAISSLVWGWSEDNL 481

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +  D++     + DP    +L+ + +L G  RH + H  G VI    L ++VP+ +
Sbjct: 482  ----LERDAKAAGLDIKDPVTRNVLQYATELLGFPRHLTQHVGGFVITRDRLDEVVPIMK 537

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                D  + +++   ++   ++K D L L  LT L+K+   L     VK  L+ +   +H
Sbjct: 538  TAMPDRYMIEWDKDDLDNVKILKVDVLALGMLTCLRKAFSLLELHYDVKKTLADLGNKEH 597

Query: 607  -----ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
                   Y ++    TLG+FQ+ES      L  ++P    D++  V++ RPGPI  D + 
Sbjct: 598  GDEGEPVYEMMGRADTLGVFQIESRAQMSMLPRLKPKVFYDLVIEVAIVRPGPIQGDMVH 657

Query: 660  VYNNRKNGKEKIVSI-HPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             Y  R+  + K + I +P   ++ +L+ T GV ++QEQ MQIA   +G+  +EAD LRRA
Sbjct: 658  PYLKRREQRAKNIPIKYPSKELETVLERTLGVPLFQEQAMQIAITAAGFKPAEADKLRRA 717

Query: 717  MGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M   K    +   ++RFI G          A   F  +  F +YGF +SHAA++A++ Y 
Sbjct: 718  MATFKRTGTIGNFEKRFIEGMVSKDYDPEFAKQCFNQIKGFGEYGFPESHAASFALLVYA 777

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP----------- 824
            ++W+K +YP  F  A +  +        +  +DAR+  + I+P  +N             
Sbjct: 778  SSWLKAYYPDVFCTAMLNSQPMGFYAPAQLVRDAREHGVAILPVDINDSNWDCGLEEAAF 837

Query: 825  ---CVDFKVGDNR--------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                +DF+  + R        +      IKG+ T     ++    +  + S+ D   R  
Sbjct: 838  DRNAIDFRHHEMREIIKTRHAVRLGFRQIKGLSTDDMERLVSHRGEG-YSSVRDLWLR-- 894

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD--NIQKYAQWVEKNRTNKHENIFAHEK 931
               L + V+E L  A A      SR   L ++   +++   + +      +H ++ A   
Sbjct: 895  -SGLQKSVIERLADADAFRSLKLSRRDALWAVRALDVRSATEELPLFEQVRHVDLQAEPA 953

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                + +  E+            + R L      HP+   +  LRK GI    + +    
Sbjct: 954  AKLPEMLPGEQVI---------EDYRYLSLSLKAHPVSFLREELRKAGITRNVDLLKVAN 1004

Query: 992  GNNIRLAAMVVSKQQKKTRKG 1012
            G  + +A +V+ +Q+  + KG
Sbjct: 1005 GKRVTIAGLVLVRQRPGSAKG 1025


>gi|255531275|ref|YP_003091647.1| DNA polymerase III subunit alpha [Pedobacter heparinus DSM 2366]
 gi|255344259|gb|ACU03585.1| DNA polymerase III, alpha subunit [Pedobacter heparinus DSM 2366]
          Length = 979

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 230/828 (27%), Positives = 395/828 (47%), Gaps = 83/828 (10%)

Query: 225  YEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
            Y  H+ L A+  +T++++ D   +  PD +     E+  +++  P  LENT ++   C+ 
Sbjct: 163  YRLHEYLRAIDLNTLLTKVDEGNKCRPDEHFLPPGELKHLYAAYPFILENTEKLMAGCTL 222

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR--QRL 341
                       ++ KE  + +  + ++  +K +  LE +LA   + + Y  +++   +RL
Sbjct: 223  ----------NYVNKERRNKKTYKGSKAEDKLL--LE-QLAWAGLEQRYKGENHEAAERL 269

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
              EL VI  + F  YFLI  D I++ K        GRGSGA S+ AY L ITD+DP+   
Sbjct: 270  KKELEVIEELDFFAYFLITWDIIRYGKSKGY-YHVGRGSGANSIVAYCLFITDVDPIELD 328

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            L FERFLN +R S PDFDID+  D R+++ +Y+ N YG +  A + T  S + ++  R++
Sbjct: 329  LYFERFLNKNRSSPPDFDIDYSWDEREDIQQYIFNTYGEKHTAMLGTMSSFKDRSVFREI 388

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            G+ + +P +++D        D   PV           +E    +P   +++     +E +
Sbjct: 389  GKVMGLPKAEID--------DFLDPVK----------QEEHKKNPVYKKIMAAHGMMEKM 430

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
                S HA GI+I + P++    +    + D    Q++M   E  GL KFD L  + +  
Sbjct: 431  PNQRSIHAGGILISEDPITYYTALDLPPK-DFATVQWDMYEAEAIGLDKFDILSQRGIGH 489

Query: 582  LQKSLDFLAQR-GVKVDL----SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            +++++  + Q  G  VD+    SL+   D     LL    ++G F +ES  MRQ L  + 
Sbjct: 490  IKEAVQLIRQNTGDVVDIHDTRSLL--KDPRLNGLLKEGSSIGCFYIESPAMRQLLVKLA 547

Query: 637  PDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
             +    ++A  S+ RPG   +  +  Y    +  E++  +HP+++  LK+T GV++YQE 
Sbjct: 548  CEDYLTLVAASSIIRPGVAQSGMMATYIYNYHHPEEVKYLHPIMEEHLKDTYGVMVYQED 607

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKI--KEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            V++I     G  L++AD+LRR M  K   K+E D+  E F   A K G  + +   I+  
Sbjct: 608  VIKICYHYGGLDLADADILRRGMSGKYRSKKEFDRLIESFFIHAKKEGRDEEVTKEIWRQ 667

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +A FA Y F+K+H+A+YAV SYQ+ ++KT+YP EF+ A +        +   +  + R+ 
Sbjct: 668  VASFAGYSFSKAHSASYAVESYQSLFLKTYYPKEFMVAVLN-NYGGFYQRWVYVHELRKV 726

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM----EASADKPFDSLEDF 868
               +  P VN       +  +  Y  L  I+G+    +RH+     E  A+  +  LEDF
Sbjct: 727  GAVVHLPCVNHSEDVVSINGSDAYLGLIGIQGL---ESRHMTLIPKERRANGLYKGLEDF 783

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              R     L + +L  L+  GAL   G S+  LL  +     Y+    K      + +F 
Sbjct: 784  VRRT-GITLEQAIL--LIRIGALRFTGSSKKALLWEV-----YSYLGNKQPEVPSQELFR 835

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV----YKPILRKMGIKGYE 984
             E    S    L     +     + NE  +LG+  S    D+    Y+  ++  G++ Y 
Sbjct: 836  ME----SKACVLPPLDSDKLEDAY-NELELLGYPVSMGMFDMLKTDYRGDVKASGLRAY- 889

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   G  I++  + V ++   T+   ++ + TF +     E NFF
Sbjct: 890  ------IGQTIKMVGLYVCEKTVHTKNNKKMWFGTFLDA----EGNFF 927



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VHSSYSL  G +S+  ++ +  +     +AITD NN    +EF ++  A G++PI G 
Sbjct: 3  LNVHSSYSLRYGTMSVEQLVKEAVSLGIEQMAITDINNSTGVMEFMRECRAHGVRPIGGI 62

Query: 74 QL 75
          + 
Sbjct: 63 EF 64


>gi|73538350|ref|YP_298717.1| error-prone DNA polymerase [Ralstonia eutropha JMP134]
 gi|72121687|gb|AAZ63873.1| DNA polymerase III, alpha subunit [Ralstonia eutropha JMP134]
          Length = 1111

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 245/877 (27%), Positives = 420/877 (47%), Gaps = 84/877 (9%)

Query: 175  KKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++ FG+R ++ L++ +G+ D    +++  ++    +PLVA               DVL A
Sbjct: 209  REAFGERAWIALEQLQGHADALHRARLESVSAQAGVPLVAAGAVTMHVRSRKPLSDVLTA 268

Query: 234  VAHSTVVSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
            +     + +     + P  + +L+ R  +  ++    EAL  T++IA  C F L      
Sbjct: 269  IRLGKPLPECGMA-LAPNAEQHLRMRQVLSRLYPR--EALAQTLKIAGLCDFSLDTLRYE 325

Query: 292  LPRFIEKECDDIQKEEE--NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
             P  +      + K E   + LR +  AG  +R   G         ++ ++L+ EL +I 
Sbjct: 326  YPEEL------VPKGETPISYLRKEVEAGKRMRFPHGL------KPEWEKQLEGELELIE 373

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
              ++  +FL V D +++A++  I +  GRGS A S+  Y L +T++ P + +LLF RFL+
Sbjct: 374  EKQYEHFFLTVHDIVRFARQEGI-LCQGRGSAANSLVCYCLYVTEVSPEQANLLFGRFLS 432

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
             +R   PD D+DF   RR+EVI+Y+  KYG +R A   +  + ++++ALRDVGRAL +  
Sbjct: 433  RERDEPPDIDVDFEHQRREEVIQYIYRKYGRDRTALAASLITYRSRSALRDVGRALGIDA 492

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADD-SRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            S V+++ K      A   S Q   D   R+   R   P+V +   ++ +L G  RH S H
Sbjct: 493  SVVEQVVK----GQAWWESGQGFLDRIGRYGLDR-ESPAVQQWASLTTQLHGFPRHLSQH 547

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-- 586
              G V+    LS+LVP+     +D  V Q++   +E  GL+K D L L  L+ ++++L  
Sbjct: 548  VGGFVMARGKLSRLVPIENAAMADRSVIQWDKDDLESLGLLKVDVLALGMLSAIRRALAM 607

Query: 587  -----DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
                 + LA+ GV   +  +P +D  TY ++    T+G+FQ+ES   +  L  +QP    
Sbjct: 608  IPNPDESLAEAGVPARMEDVPKEDKATYAMICRADTIGVFQIESRAQQSMLPRLQPRVYY 667

Query: 642  DIIALVSLYRPGPIDNIVVYNN-------RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
            D++  V++ RPGPI   +V+         R+ GK   V  + +I  +L  T GV I+QEQ
Sbjct: 668  DLVVEVAIVRPGPIQGGMVHPYLKRREAFRRTGKPP-VYFNDVIKKVLGRTLGVPIFQEQ 726

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            VMQ+A   +G++  +AD LRR+M   + + ++ + +E  I   ++    ++ A+ I + +
Sbjct: 727  VMQLAIDAAGFTAGQADKLRRSMAAWRRRGDLRQHQEALIRALTERKYPESFALAICKQI 786

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              F +YGF +SHAA++A + Y +AW+K H+P  FL A +  +        +  QDA++  
Sbjct: 787  EGFGEYGFPESHAASFAKLVYISAWLKCHHPSAFLCALLNSQPMGFYSPSQLVQDAQRHG 846

Query: 814  IQIMPPSVNTPCVDFKV---------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            + ++P  V     D  +         G   +   L  +KG+    A  I  A A +PFDS
Sbjct: 847  VVVLPVDVTVSNWDSTLEPAPGQTGAGKPPVRMGLGRVKGMREAAALRIEAARAQRPFDS 906

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK-- 922
            +ED   R     L+R  ++ L  A AL     +R Q           A+W       +  
Sbjct: 907  VEDLALRAS---LDRHDIDVLAAADALAALAGNRRQ-----------ARWQASAAALQVA 952

Query: 923  HENIFAHEKGTFSDKITL------EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            H ++  HE      ++TL      E+ + + +S          G     HPL + +  L 
Sbjct: 953  HRDLL-HEAPLIERQLTLPAPRLGEEVAADYAST---------GLSLKSHPLALLRAKLE 1002

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             M     E+      G  +R   +V  +Q+  T  G+
Sbjct: 1003 AMDYATAEQLSRCRNGRRVRTCGIVTVRQRPATASGT 1039


>gi|16127441|ref|NP_422005.1| DNA polymerase III subunit alpha [Caulobacter crescentus CB15]
 gi|221236252|ref|YP_002518689.1| DNA polymerase III subunit alpha [Caulobacter crescentus NA1000]
 gi|68565607|sp|Q9A3J3|DNAE2_CAUCR RecName: Full=Error-prone DNA polymerase
 gi|239977206|sp|B8H427|DNAE2_CAUCN RecName: Full=Error-prone DNA polymerase
 gi|13424891|gb|AAK25173.1| DNA polymerase III, alpha subunit, putative [Caulobacter crescentus
            CB15]
 gi|220965425|gb|ACL96781.1| DNA polymerase III alpha subunit [Caulobacter crescentus NA1000]
          Length = 1083

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 265/1056 (25%), Positives = 449/1056 (42%), Gaps = 115/1056 (10%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            + P +  LQ  +++S L GA     +     A    AI I D N+L   +     A    
Sbjct: 2    RPPVYAELQATTNFSFLRGASHAEELALTAEALGLTAIGIVDRNSLAGVVRAWTAAKRRS 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+ + GC+LD                    PS++   +  E + RL    +R+  + Q +
Sbjct: 62   IRVLTGCRLDF---------------MDGAPSLLCYPTDREAFGRL----TRLLTIGQLR 102

Query: 127  QSVRIC-LSWLQEI----GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                 C L+W   +    G  GLI+        +D +F  + +++A         L G  
Sbjct: 103  AEKGECHLTWRDFLDHSEGQLGLIV----PPRVLDDSFEQHLTRMA-------GDLRGRS 151

Query: 182  LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVV 240
                 + +   D  R +++  L  T   P+VATN+ L+   E     DV+  V  H  + 
Sbjct: 152  WLAASRAYAARDLQRLARLESLGRTSGAPIVATNDVLYHGPERRPLQDVISCVREHCAIQ 211

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILPR 294
                R     + ++K+  EM  +F   P A+E TVEI  R  F L+         P+ P 
Sbjct: 212  EAGFRLEANAERHIKSPEEMARLFDRWPRAVERTVEIVERIGFDLKDIREQYPDEPVPP- 270

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                      K     L +    G   R   G   K         ++  EL +I +M + 
Sbjct: 271  ---------GKTAMQHLTDLTWKGAAWRYPNGVSPK------VTAQIQEELRLIEKMDYP 315

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YF+ V D ++ A+   I +  GRGS A S   + L +T IDP    LLF RF++ +R  
Sbjct: 316  NYFITVHDIVREARSMGI-LCQGRGSAANSSVCFCLGVTAIDPTEHRLLFTRFISENRGE 374

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF  DRR+EV++YV  +YG    A   T    + ++A+RDVG+AL +       
Sbjct: 375  PPDIDVDFEHDRREEVMQYVFQRYGRAYAAICGTVIHYRPRSAIRDVGKALGLTEDVTSL 434

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            L   +        S      +   R A L    P + R + ++  L G  RH S H  G 
Sbjct: 435  LAGTVWG------SWGDGLPEDHLRNAGLDPKAPEIARAVGLANDLIGFPRHLSQHVGGF 488

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--- 589
            V+  R L + VP+ +    D    +++   I+  GL+K D L L  L  +Q+++  L   
Sbjct: 489  VLTKRRLDETVPIGKAAMKDRTFIEWDKDDIDSLGLMKVDILALGMLHAIQRAMTMLRED 548

Query: 590  -AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
              Q  +K DL+ IP +    Y +L    ++G+FQ+ES      L  ++P    D++  V+
Sbjct: 549  HGQDWLK-DLADIPKEVPGVYDMLCAADSVGVFQVESRAQMSMLPRLRPREFYDLVIQVA 607

Query: 649  LYRPGPI--DNIVVYNNRKNGKEKIVSIHPL--------IDPMLKETQGVIIYQEQVMQI 698
            + RPGPI  D +  Y  R+N +E +    P         +  +L +T GV ++QEQ M +
Sbjct: 608  IVRPGPIQGDMVHPYLKRRNKEEPVDWPKPSPEHGPPDELQEILGKTFGVPLFQEQAMSL 667

Query: 699  AQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            A   + ++  EAD LR+AM   +     D  + +FI G    G  +  A   F+ +  F+
Sbjct: 668  AIEAAKFTPDEADGLRKAMATFRNLGSPDAYRNKFIEGMVGRGYERAFAERCFKQIEGFS 727

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             YGF +SHAA++A + Y +AW+K  +P  F AA +  +     +  +  +DAR+  ++++
Sbjct: 728  HYGFPESHAASFAKLVYVSAWIKWAWPDVFCAALINAQPMGFYQPAQLVRDAREHGVEVL 787

Query: 818  PPSVNTPCVDF-----------------KVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
            PP + T   D                  KV          A++ +G    + + E     
Sbjct: 788  PPDILTSDWDCTLAPISTGFRPPRVRHDKVACQETRPRWKAVR-LGFRQIKGLRETLDIP 846

Query: 861  PFDSLEDFCSRVDSK----KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
            P        +R  ++     + ++ LE L  A A    G SR + L ++  ++       
Sbjct: 847  PLLKARGEGARTPAEFAQGGVPQKALELLAEADAFASVGLSRREALWAVKGLKG------ 900

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            +++      + A     F +++ L   +   ++     + R        HP+  Y+ +L 
Sbjct: 901  EHKAPVQAPLLAGLP-LFEERVALPAMA---ATQEVAEDYRTTSLSLKAHPIGFYRSMLA 956

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              G+   E  ++   G  + +A +V+ +Q+  T KG
Sbjct: 957  ARGVVPAERLLSLKDGARVSVAGLVLIRQRPGTAKG 992


>gi|91976380|ref|YP_569039.1| error-prone DNA polymerase [Rhodopseudomonas palustris BisB5]
 gi|123762868|sp|Q139V1|DNAE2_RHOPS RecName: Full=Error-prone DNA polymerase
 gi|91682836|gb|ABE39138.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB5]
          Length = 1110

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 274/1053 (26%), Positives = 463/1053 (43%), Gaps = 104/1053 (9%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K P++  + V +++S LEG     + + + +     AI I D N L            AG
Sbjct: 2    KVPAYAEIGVTTNFSFLEGGSHPQDYVHEASRLGLEAIGIADRNTL------------AG 49

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFP-TVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            +        + D+    ++    +  F    P ++        Y RL  L+S +  L   
Sbjct: 50   VVRAYSELGNEDLIHKPRLLIGARLVFADGTPDVLAYPVDRAAYGRLCRLLS-VGKLRGA 108

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            K    + ++ L+   ++GL ++       +   + F +S +A   L     L    +++ 
Sbjct: 109  KGECHLAVADLEAF-SQGLSLV-------LMPPYRFQASAIAAA-LQRLTALESGGVWLG 159

Query: 186  LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-K 243
            L  + RG D+ R +++ ++A+   +P +ATN+ L+   E     DVL  V   T + +  
Sbjct: 160  LTPYYRGDDKRRLARLKRVAWAARVPGIATNDVLYHHPERRALQDVLSCVREKTTIDKIG 219

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKEC 300
             R     + +LK  +EM  +F   P+A+  T+  A   SF L   + H P        E 
Sbjct: 220  RRLEANAERHLKPAAEMARLFRADPDAIAETLRFAAGISFTLDELKYHYP-------DEP 272

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                K  +  L +    G+      G I+   HA      +D EL +IA   ++ YFL V
Sbjct: 273  VPPGKTAQQHLEDLTWEGVAEYFPAG-ISDKLHAT-----IDKELGIIAHRGYAQYFLTV 326

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +++A+  +I +  GRGS A S   Y L IT +DP    LLFERF++ +R   PD D+
Sbjct: 327  HDIVRYARSQDI-LCQGRGSAANSAVCYVLGITCVDPTEIDLLFERFVSEERDEPPDIDV 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR+EV++Y+  +YG  R A + T    + ++A+RDVG+AL +       L   + 
Sbjct: 386  DFEHSRREEVMQYIYRRYGRHRAAIVATVIHYRPRSAIRDVGKALGLSEDVTAALADTVW 445

Query: 481  NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                   S     ++ + ++A L   +P + R +E++ +L G  RH S H  G V+    
Sbjct: 446  G------SWGKGLNEMQVKQAGLDPHNPLIGRAVELATELIGFPRHLSQHVGGYVLTQDR 499

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L   VP+           +++   I+   ++K D L L  LT ++K  D +AQ +GV+  
Sbjct: 500  LDSYVPIGNAAMEGRTFIEWDKDDIDAIKMMKVDVLALGMLTCIRKGFDLIAQHKGVRYA 559

Query: 598  LSLIPF-DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI- 655
            LS I   DD+  Y +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGPI 
Sbjct: 560  LSDIKSEDDNAVYQMLQRGESIGVFQVESRAQMNMLPRLKPKCFYDLVIEVAIVRPGPIQ 619

Query: 656  -DNIVVYNNRKNGKEKIVSIHPL--------IDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
             D +  Y  R+N +E +V   P         ++ +L +T GV ++QEQ M+IA   + ++
Sbjct: 620  GDMVHPYLRRRNKQEPVVYPAPAGHAGDANELEVILGKTLGVPLFQEQAMRIAIEAAHFT 679

Query: 707  LSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
              EA+ LRRAM   +    + K + + +      G     A N FE +  F  YGF +SH
Sbjct: 680  PDEANQLRRAMATFRNVGTIGKFESKMVGNLVARGYDPVFAKNCFEQIKGFGSYGFPESH 739

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV---N 822
            AA++A + Y +AWMK  +P  F  A +  +        +   DAR   +++ P  V   +
Sbjct: 740  AASFAKLVYVSAWMKCEHPDAFCCALLNSQPMGFYAPAQIVGDARANEVEVRPVDVSFSD 799

Query: 823  TPC-VDFKVGDNR-IYYSLAAIKG---VGTTTARHIMEAS---------------ADKPF 862
              C ++ + G +  +      I G         R   EA                A  PF
Sbjct: 800  GQCTLEERCGKHHAVRLGFRQIDGFVWADPDEERVRREAGLLPSEDWAARIVAARARGPF 859

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
            +SLE F +R+ +  L +R L  L  A A    G  R   L ++  +            + 
Sbjct: 860  NSLERF-ARLTA--LPKRALILLADADAFRSLGLDRRAALWAVRRLPDDVPLPLFEAASA 916

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL---RKMG 979
             E +            T E    +  +VR             GHP++  +P+    R + 
Sbjct: 917  SEQL-DENAAPLPQMPTAEHVVADYQTVRLS---------LKGHPMEFLRPLFAAERVVT 966

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             +   ES   + G  +R A +V+ +Q+  + KG
Sbjct: 967  CRSISES--RVSGQRMRCAGVVLVRQRPGSAKG 997


>gi|295132512|ref|YP_003583188.1| DNA polymerase III subunit alpha-2 [Zunongwangia profunda SM-A87]
 gi|294980527|gb|ADF50992.1| DNA polymerase III subunit alpha-2 [Zunongwangia profunda SM-A87]
          Length = 989

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 236/910 (25%), Positives = 429/910 (47%), Gaps = 110/910 (12%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           ++L  HS +SL  G  S N +L    +++   +A+TD NN  + L F ++A    I+P++
Sbjct: 1   MYLNCHSYFSLRYGTFSENELLKLAESNKATYVALTDINNTSACLSFLKQAKNFSIKPLV 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE-LVSRMYLLDQGKQSVR 130
           G    ID ++ ++               V++     G++ + + L S ++      ++  
Sbjct: 61  G----IDFRNGVEQ------------QYVVIAKNRNGFREMNQHLSSHLHAKMNFDKNAP 104

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I          EG  ++      P  +    N ++  E   +       ++L     +  
Sbjct: 105 IL---------EGCYIIY-----PFIKVLETNKTEFMENEFIGVSVRDLNKL-----KFS 145

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVT 249
           GY  Y               LV   +  F S+ D+ AH +L A+ ++T++S+     +  
Sbjct: 146 GYKNYTSK------------LVVLQSVSFRSKRDFNAHRLLRAIDNNTLLSKLAVEEQGN 193

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ----- 304
           P+  + ++ E+  +F + PE L NT  +A  C         +   F +K+ +++      
Sbjct: 194 PEDKMLSKEEVNEVFKEFPEILSNTKALAEGCE--------VEFTFSKKQNNNLSSIDEA 245

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
           K +E +LR      +E R  +         ++   RL+ EL  I ++ F  YFLI  + +
Sbjct: 246 KADELKLRKMCYDNIENRYPEAD-------EEVYARLNKELTAIIKLGFVSYFLINHEIV 298

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           Q+A+  + PV  GRGSGA S+ AY + IT++DP+   L FERF+N +R S PDFDIDF  
Sbjct: 299 QYARSKDYPV-IGRGSGANSIVAYIIGITNVDPIELDLYFERFINENRSSPPDFDIDFSW 357

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             R++V R++ N++ H  VA + T+ + + +A +R++G+   +P +++D+L         
Sbjct: 358 RDREDVTRFIFNRFDH--VALMGTYVTFKRRAVIRELGKVFGLPKAEIDKL--------- 406

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              SL       RF  + L D     +L     + G   + S H+ GI+I +  +     
Sbjct: 407 ---SL------GRFERSSL-DKMELLVLNYGNLIAGFPNYLSVHSGGILILNDDIFNYGA 456

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +   + +    Q +M   E+ G+ KFD L  + L+ +  +L+ + Q   + D  +   D
Sbjct: 457 TFLPPK-NFQTIQIDMNIAEEVGIHKFDILAQRGLSKITDTLELIRQN--QPDAFIEDID 513

Query: 605 DHETY-------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           +   +       +LL     +G+F +ES  MR  L  +Q D   +++A  S+ RPG    
Sbjct: 514 NISKFKKDPAINNLLKMGDCMGVFYVESPAMRGLLTKLQTDNYMNLVAASSIIRPGISSG 573

Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            +   Y  R    ++    HP++  ++ +T G+++YQE VM++A   +G S  +ADVLRR
Sbjct: 574 GMKEEYIKRHRDPKRRDQGHPVMLEIMGDTYGIMVYQEDVMKVAHHFAGLSFDDADVLRR 633

Query: 716 AM-GKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            M GKK  K +M+K + +F S   +   ++ I   ++E ++ FA Y F K H+A+YAV S
Sbjct: 634 GMSGKKTSKGQMEKIEAQFRSNCKERRYTQQITDEVWEQISSFAGYAFPKGHSASYAVES 693

Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
           YQ+ ++K ++P+EF+ A +         ++ + Q+ ++    ++ P +N       +   
Sbjct: 694 YQSLYLKKYFPLEFMVAVLN-NGGGFYSVETYIQEIKKCGGNVLAPCINHSDHPNTILGK 752

Query: 834 RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            IY     IK +   T + I+E       + SL+DF  RV+   ++   L  L+  GA  
Sbjct: 753 NIYLGFGYIKELEAKTIQQILENRQFFGYYKSLDDFIDRVE---ISIEQLRILLKVGAFR 809

Query: 893 CFGYSRMQLL 902
             G  + QLL
Sbjct: 810 FTGKDKHQLL 819


>gi|27378137|ref|NP_769666.1| error-prone DNA polymerase [Bradyrhizobium japonicum USDA 110]
 gi|71151816|sp|Q89QU8|DNAE2_BRAJA RecName: Full=Error-prone DNA polymerase
 gi|27351284|dbj|BAC48291.1| DNA polymerase III alpha chain [Bradyrhizobium japonicum USDA 110]
          Length = 1151

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 195/649 (30%), Positives = 319/649 (49%), Gaps = 44/649 (6%)

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
           HRG DR R +++  LA T ++ L+ATN  L+         DVL  +   T +    R   
Sbjct: 169 HRGDDRRRLARLDDLATTAKVQLLATNEVLYHDPARRPLQDVLTCIREKTTIEAVGRKLE 228

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILPRFIEKECD 301
              + +LK   EM  +F D P+A+  T+  A +  F L          P+ P        
Sbjct: 229 ANAERFLKTPREMSRLFRDFPDAIAETMRFANKIDFSLDQLRYQYPDEPVPP-------- 280

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              K  +  L +   AG++   A      G      R  L  EL +IA +K++ YFL V 
Sbjct: 281 --GKTAQGHLEDLTWAGVDKYFA------GKIDDKLRATLKKELALIAELKYAHYFLTVH 332

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D + +A+  NI +  GRGS A S   Y L IT +DP +  LLFERF++ +R+  PD D+D
Sbjct: 333 DIVHYARSQNI-LCQGRGSAANSAVCYVLGITSVDPTKVDLLFERFISKERLEPPDIDVD 391

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           F   RR+EV++YV  +YG  R A I T    + ++A+RDVG+AL +       L   +  
Sbjct: 392 FEHSRREEVMQYVYRRYGRHRAAIIATIIHYRPRSAIRDVGKALGLTEDVTAALADTVWG 451

Query: 482 DPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                 S  +  +D + ++A L   +P ++  +E++ +L    RH S H  G V+    L
Sbjct: 452 ------SWGSGLNDMQVKQAGLDPQNPMINLAVELATELIEFPRHLSQHVGGYVLTQDRL 505

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
              VP+      D    +++   ++   ++K D L L  LT ++K  D + Q +G +  L
Sbjct: 506 DTYVPIGNAAMDDRTFIEWDKDDVDALNMMKVDVLALGMLTCIRKCFDLIDQHKGERWVL 565

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
           + +P DD + Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D
Sbjct: 566 ASVPQDDPKVYDMLCDGESLGVFQVESRAQMNMLPRLKPRTFYDLVIEVAIVRPGPIQGD 625

Query: 657 NIVVYNNRKNGKEKI--VSIHPLIDP------MLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            +  Y  R+NG+EK+   S  P   P      +L +T+GV ++QEQ M+IA   + ++  
Sbjct: 626 MVHPYLRRRNGQEKVNYPSPSPEHGPADELYKVLHKTKGVPLFQEQAMRIAIEAAKFTSE 685

Query: 709 EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
           EA+ LRR+M   +    + K +++ I      G     A + F+ +  F  YGF +SHAA
Sbjct: 686 EANGLRRSMATFRNVGTIGKYEDKLIGNMVARGYDPNFARSCFDQIKGFGSYGFPESHAA 745

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
           ++A + Y ++W+K H+P  F    +  +        +   DAR+  +++
Sbjct: 746 SFAQLVYISSWLKYHHPDAFCCGLLNSQPMGFYAPAQIVGDARKNGVEV 794


>gi|169344095|ref|ZP_02865081.1| DNA polymerase III subunit alpha [Clostridium perfringens C str.
           JGS1495]
 gi|169297830|gb|EDS79927.1| DNA polymerase III subunit alpha [Clostridium perfringens C str.
           JGS1495]
          Length = 610

 Score =  287 bits (734), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 155/412 (37%), Positives = 235/412 (57%), Gaps = 35/412 (8%)

Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            RGV++DL  + FDD E Y ++    T+G+FQLES+GM   ++ ++PDC+EDIIA +SLY
Sbjct: 11  NRGVEIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIAGISLY 70

Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           RPGP+  I  Y + K   + +  I P ++ +L  T GV++YQEQVM+I + L+GYS+  +
Sbjct: 71  RPGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGYSMGRS 130

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGAS------------KNGISKTIAVNIFELLAKFAD 758
           D++RRAM KK  + M+++++ FI G              +NGIS   A  IF+ +  FA 
Sbjct: 131 DLVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSMMDFAS 190

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           Y FNKSHAAAYAVI +QTA++  +YPVEFLAA +   M N +K+ ++ + A +  IQ++P
Sbjct: 191 YAFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLGIQVLP 250

Query: 819 PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKL 877
           P +N     F V  + I + + AIK VG     +I ++  +K  F SL DFC+++D   +
Sbjct: 251 PDINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGRFTSLMDFCNKIDLSIV 310

Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
           N+R +ESL+ AG  D     R QLL   + I        K   +   ++F          
Sbjct: 311 NKRSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFG--------- 361

Query: 938 ITLEKFSVENSSVRFEN------------EQRVLGFYFSGHPLDVYKPILRK 977
             L++ S  N  +R+ N            E+ + G Y SGHPLD Y+  L++
Sbjct: 362 -ALQEESESNLEIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKE 412


>gi|255316457|ref|ZP_05358040.1| DNA polymerase III DnaE [Clostridium difficile QCD-76w55]
          Length = 774

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 192/629 (30%), Positives = 312/629 (49%), Gaps = 71/629 (11%)

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            + AK A+ D  R           + KLIP+ P   +  +A+ + +  ++    +  V  +
Sbjct: 1    MGAKGAINDTARIWNKDTRFSSEISKLIPSRPNITID-EALKESTGLKQLYDGNLEVRDI 59

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP----MYRDVRSDLPVTQFNMKWIEKAG 567
            ++ ++K+EGL + +  HA GI+IG   ++   P      R+      VTQ+ M+  E  G
Sbjct: 60   IDKAKKIEGLLKSSGVHACGIIIGREAITNFCPQSLVTNRETGKKEWVTQYTMEECESIG 119

Query: 568  LIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFL LKT+T+L +S+ D     G K+ ++ +P +D E Y  +    T G+FQ+ES 
Sbjct: 120  LLKMDFLALKTMTILNESIEDINESYGQKLAVNNLPVNDVEVYEHIFKGNTRGVFQIESP 179

Query: 627  GMRQALEGMQPDC----------------------------IEDIIALVSLYRPGPIDNI 658
            GM   ++ +  D                              E +IA +SLYRPGP++ I
Sbjct: 180  GMTGFMKNLFQDVPDFLNSISNSSLTKEQIEKKKEEFGDILFERLIAGISLYRPGPMEEI 239

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y N     E+I    P ++ +LK T G+IIYQEQV+ I   L+G+S  + D +R+AMG
Sbjct: 240  PNYINNMINPEQIHYDTPELESILKNTYGIIIYQEQVINIVIKLAGFSKGQGDWIRKAMG 299

Query: 719  KKIKEEMDKQKERF------------------ISGASKNGISKTIAVNIFELLAKFADYG 760
            KK K+E+ K+ E +                  I G   N IS+ +A + +  +  F+ Y 
Sbjct: 300  KK-KDEILKEYEPYFIYGSGDAKDKVTKKPLNIVGCINNEISEDVAKSTWNKMKDFSKYA 358

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSH   Y+++SYQTAW+  +YPV F+ +++ + + N  K K F     + NI ++PPS
Sbjct: 359  FNKSHGGGYSLLSYQTAWISHYYPVIFMKSNLNVYITNTNKCKAFLAYCSRKNITVLPPS 418

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSR-VDSKKLN 878
            +N     F V +N I +    IK +G ++   I E  +++  F + +DF  R V  +K +
Sbjct: 419  INKSNKKFSVENNCIRFGFQGIKNLGCSSELIIKERESERGLFKNFQDFIERMVKYQKTD 478

Query: 879  RRVLESLVFAGALDCFGYS-RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            +RV+E+L+FAGALDCF  S R + L+ + +I + ++  +K   N   ++F  E  +   +
Sbjct: 479  KRVIENLIFAGALDCFKDSTRKEKLEIIPSILESSKLDKKKNINGQISLFDIEDFSGIKE 538

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI---------------KG 982
            I + K    N     E E+ V   Y S HPLD +  +L K  I               K 
Sbjct: 539  IVIPKLGEFNKDYLLEKEKEVANIYISAHPLDNFMDLLEKEDIVEIVDLISEDDEYNKKD 598

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
             E  +    GN I +A +V   Q K +++
Sbjct: 599  NENYLTDFVGNTIYVAGIVKDVQIKYSKR 627


>gi|94497867|ref|ZP_01304433.1| DNA polymerase III, alpha subunit [Sphingomonas sp. SKA58]
 gi|94422756|gb|EAT07791.1| DNA polymerase III, alpha subunit [Sphingomonas sp. SKA58]
          Length = 1218

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 232/860 (26%), Positives = 391/860 (45%), Gaps = 74/860 (8%)

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
            R  G D  R ++  +L+    +PL+AT ++L+ S       DVL  +   T + +  R  
Sbjct: 280  RRDGRDARRLARFQRLSDRAGVPLLATMDALYASPAQRPLQDVLTCIRAGTTIGKAGRRL 339

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L + +E+  ++   P+A+  T    RR  F L       P     E    Q+ 
Sbjct: 340  EANAERHLHDPAEIARLYRACPDAVAQTAVFLRRIRFSLDQLRYEYPHEPVPEGWTAQQW 399

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYH-AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E           E+ L+      G H     RQ LD E ++IAR +++ YFL V D + 
Sbjct: 400  LE-----------ELTLSAAHARYGPHIPYQVRQLLDEEFSLIARQRYAYYFLTVYDIVA 448

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S+  + L +T +DP +  LLF RF++ +R   PD D+DF  +
Sbjct: 449  FARTKGI-LCQGRGSAANSMVCFLLGVTSVDPQKHDLLFSRFVSEERDEPPDIDVDFEHE 507

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV++Y+ ++YG  R     T    ++++A+R+V + L +    V RL   I    A 
Sbjct: 508  RREEVMQYIYDRYGRHRAGIAATVIHYRSRSAIREVAKVLGLSDDIVTRLSSTIWGSYAR 567

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLE-ISQKLEGLY-RHASTHAAGIVIGDRPLSQLV 543
             ++ Q I++        LA+P + RL E + Q LE  + RH S H  G ++    L + V
Sbjct: 568  DMNEQRISEAG----FDLANPQIVRLRELVGQLLEAPFPRHLSQHVGGFILTQNRLDETV 623

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598
            P++    +D    +++   I+  GL+K D L L  LT ++K+ D +   G+      VDL
Sbjct: 624  PLHHAAMADRSFIEWDKDDIDALGLMKVDVLALGMLTCIRKAFDLMRDHGLGDHQLVVDL 683

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            +    DD   Y +L    ++G+FQ+ES      L  ++P  + D+   V++ RPGPI+  
Sbjct: 684  NA---DDPAVYDMLCRGDSIGVFQVESRAQINMLPRLRPRELYDLTVQVAIVRPGPIEGD 740

Query: 659  VV--YNNRKNGKEK--IVSIHPLIDP-----MLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            +V  Y  R+ G EK    S  P  +P     +LK+T GV ++QEQ M++A + + ++ S+
Sbjct: 741  MVHPYLRRRAGLEKPEFPSPDPPHNPNELRDLLKQTYGVPLFQEQAMKLAIVAAEFTPSQ 800

Query: 710  ADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            A+ LRR+M   +    MDK +E+ I G  + G  +  A   +  +  F  YGF +SHA +
Sbjct: 801  ANQLRRSMATFRHVGGMDKFREKMIGGMVRRGYKRDFAERCYSQIEGFGSYGFPESHALS 860

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI------------ 816
            +A + Y +AW+K H P  F  A +  +        +  +DAR+  + I            
Sbjct: 861  FARLVYVSAWIKCHQPAVFACALLNSQPMGFYAPAQLVRDAREHGVTIHGVDVNMSRWDN 920

Query: 817  -MPPSVNTPCVDFKVGDNR---IYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSR 871
             + P + +   D   G  R   +      + G   + A  ++ A AD   F ++ED   R
Sbjct: 921  HLEPLLRSRRSDRGEGAGRALALRLGFRQVDGFRESWATQLVAARADGGLFTNMEDLARR 980

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL-----DNIQKYAQWVEKNRTNKHENI 926
                 L  R L  L  A A    G  R   L        D +  +A    + R      +
Sbjct: 981  A---GLPARALRLLADADACRSLGQDRRAALWEARRTPSDELPLFA--AARQRQGDAREL 1035

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
             A            E+ + + +  R             GHP+   +P+    G+    ++
Sbjct: 1036 GAEPDAQLPAMPLAEQVTTDYAMTRLS---------LKGHPMQFLRPVFAAEGVLSCAQA 1086

Query: 987  VATIRGNNIRLAAMVVSKQQ 1006
             A   G  +R+A +V+ +Q+
Sbjct: 1087 GAAKNGAKVRVAGVVLVRQR 1106


>gi|213418464|ref|ZP_03351530.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 391

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 162/407 (39%), Positives = 235/407 (57%), Gaps = 21/407 (5%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K A+   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVH--- 57

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
           N  + ++       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 58  NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
           EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R  R  +       
Sbjct: 110 EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +FSD+PEALENTVEIA+RC+  +++    LP+F   +        E+ L  K+  GL
Sbjct: 230 MCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDYLVKKSKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 391


>gi|39934872|ref|NP_947148.1| error-prone DNA polymerase [Rhodopseudomonas palustris CGA009]
 gi|71151838|sp|Q6N8V0|DNAE2_RHOPA RecName: Full=Error-prone DNA polymerase
 gi|39648722|emb|CAE27244.1| putative DNA polymerase III alpha chain [Rhodopseudomonas palustris
           CGA009]
          Length = 1195

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 207/667 (31%), Positives = 330/667 (49%), Gaps = 42/667 (6%)

Query: 177 LFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           L  D +++ L  + RG D+ R +++ ++A    +P +ATN+ L+         DVL  V 
Sbjct: 221 LNADAVWLGLTPYYRGDDKRRLARLRRIAAVARVPCIATNDVLYHHPRRRALQDVLTCVR 280

Query: 236 HSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPI 291
             T + +  R      + +LK  +EM  +F   PEA+  T+  A R SF L   + H P 
Sbjct: 281 EKTSIDKAGRRLEGNAERHLKPAAEMARLFRHDPEAIAETLRFADRISFTLDELKYHYPD 340

Query: 292 LPRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            P    K     +Q   E  ++     G+  RL +  IAK             EL +I R
Sbjct: 341 EPVPPGKTAQAHLQDLTEQGIKQYFPNGISDRL-RATIAK-------------ELAIIER 386

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
             ++ YFL V D +++A+  +I +  GRGS A S   Y L IT +DP    LLFERF++ 
Sbjct: 387 RGYAHYFLTVHDIVRYARSQDI-LCQGRGSAANSAVCYVLGITCVDPTEIDLLFERFVSE 445

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
           +R   PD D+DF   RR+EV++Y+  +YG  R A + T    + ++A+RDVG+AL +   
Sbjct: 446 ERDEPPDIDVDFEHSRREEVMQYIYRRYGRHRAAIVATVIHYRPRSAIRDVGKALGLSED 505

Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTH 528
               L   +        S     ++ + R+A L   +P + R +E++ +L G  RH S H
Sbjct: 506 VTAALADTVWG------SWGKGLNEMQVRQAGLDPHNPMIGRAVELATELIGFPRHLSQH 559

Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
             G V+    L   VP+     +D    +++   I+   ++K D L L  LT ++K    
Sbjct: 560 VGGYVLTQDRLDSYVPIGNAAMADRTFIEWDKDDIDAVKMMKVDVLALGMLTCIRKGFHL 619

Query: 589 LAQ-RGVKVDLSLIPF-DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
           +AQ +GV+  LS I   DD+  Y +L    ++G+FQ+ES      L  ++P C  D++  
Sbjct: 620 IAQHKGVRFQLSDIKSEDDNAVYKMLQRGESIGVFQVESRAQMNMLPRLKPRCFYDLVIE 679

Query: 647 VSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL--------IDPMLKETQGVIIYQEQVM 696
           V++ RPGPI  D +  Y  R+NG+E +V   P         +  +L +T GV ++QEQ M
Sbjct: 680 VAIVRPGPIQGDMVHPYLRRRNGQEPVVYPSPSGEAGDKNELRQILGKTLGVPLFQEQAM 739

Query: 697 QIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           +IA   + ++  EA+ LRRAM   +    + K + + I    K G   T A N FE +  
Sbjct: 740 RIAIEAAHFTPDEANQLRRAMATFRNVGTIGKFEAKMIGNLVKRGYDATFAKNCFEQIKG 799

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
           F  YGF +SHAA++A + Y +AWMK  +P  F  A +  +        +   DAR   ++
Sbjct: 800 FGSYGFPESHAASFAKLVYVSAWMKCEHPDAFCCALLNSQPMGFYAPAQIVGDARSNGVE 859

Query: 816 IMPPSVN 822
           + P  V+
Sbjct: 860 VRPVDVS 866


>gi|192290399|ref|YP_001991004.1| error-prone DNA polymerase [Rhodopseudomonas palustris TIE-1]
 gi|192284148|gb|ACF00529.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris
           TIE-1]
          Length = 1195

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 212/689 (30%), Positives = 337/689 (48%), Gaps = 49/689 (7%)

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNN 216
           ++ F +  +A   L     L  D +++ L  + RG D+ R +++ ++A    +P +ATN+
Sbjct: 203 SYLFQTKTIAIA-LERLTALNADAVWLGLTPYYRGDDKRRLARLRRIAAAARVPCIATND 261

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            L+         DVL  V   T + +  R      + +LK  +EM  +F   PEA+  T+
Sbjct: 262 VLYHHPRRRALQDVLTCVREKTSIDKAGRRLEGNAERHLKPAAEMARLFRADPEAIAETL 321

Query: 276 EIARRCSFIL---QVHAPILPRFIEKECDDIQKEEENELRNKAVA----GLEVRLAQGAI 328
             A R SF L   + H P  P    K     Q+  E+  R    A    G+  +L Q  I
Sbjct: 322 RFANRISFTLDELKYHYPDEPVPPGKTA---QQHLEDLTREGIAAYFPNGISDKL-QATI 377

Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
           AK             EL +I R  ++ YFL V D +++A+  +I +  GRGS A S   Y
Sbjct: 378 AK-------------ELAIIERRGYAHYFLTVHDIVRYARSQDI-LCQGRGSAANSAVCY 423

Query: 389 ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
            L IT +DP    LLFERF++ +R   PD D+DF   RR+EV++Y+  +YG  R A + T
Sbjct: 424 VLGITCVDPTEIDLLFERFVSEERDEPPDIDVDFEHSRREEVMQYIYRRYGRHRAAIVAT 483

Query: 449 FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADP 506
               + ++A+RDVG+AL +       L   +        S     ++ + R+A L   +P
Sbjct: 484 VIHYRPRSAIRDVGKALGLSEDVTAALADTVWG------SWGKGLNEMQVRQAGLDPHNP 537

Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
            + R +E++ +L G  RH S H  G V+    L   VP+      D    +++   I+  
Sbjct: 538 MIGRAVELATELIGFPRHLSQHVGGYVLTQDRLDSYVPIGNAAMEDRTFIEWDKDDIDAV 597

Query: 567 GLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF-DDHETYHLLTTKGTLGIFQLE 624
            ++K D L L  LT ++K    +AQ +GV+  LS I   DD+  Y +L    ++G+FQ+E
Sbjct: 598 KMMKVDVLALGMLTCIRKGFHLIAQHKGVRFQLSDIKSEDDNAVYKMLQRGESIGVFQVE 657

Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----- 677
           S      L  ++P C  D++  V++ RPGPI  D +  Y  R+NG+E +V   P      
Sbjct: 658 SRAQMNMLPRLKPRCFYDLVIEVAIVRPGPIQGDMVHPYLRRRNGQEPVVYPSPSGEAGD 717

Query: 678 ---IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFI 733
              +  +L +T GV ++QEQ M+IA   + ++  EA+ LRRAM   +    + K + + I
Sbjct: 718 KNELQQILGKTLGVPLFQEQAMRIAIEAAHFTPDEANQLRRAMATFRNVGTIGKFEAKMI 777

Query: 734 SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
               K G   T A N FE +  F  YGF +SHAA++A + Y +AWMK  +P  F  A + 
Sbjct: 778 GNLVKRGYDATFAKNCFEQIKGFGSYGFPESHAASFAKLVYVSAWMKCEHPDAFCCALLN 837

Query: 794 LEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            +        +   DAR   +++ P  V+
Sbjct: 838 SQPMGFYAPAQIVGDARSNGVEVRPVDVS 866


>gi|260432082|ref|ZP_05786053.1| error-prone DNA polymerase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415910|gb|EEX09169.1| error-prone DNA polymerase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 984

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 255/935 (27%), Positives = 419/935 (44%), Gaps = 82/935 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS-------ALEFSQK-- 61
           +  L + S+++ L GA      +++      PAIAI D N++         A E ++K  
Sbjct: 2   YAELSITSNFTFLTGASHPEEYMERAVTLGLPAIAIADDNSVAGIVRAHTQAREIARKVR 61

Query: 62  ---ACAAGIQPI-IGCQLDIDMQDNL------KMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
              A      PI   C   I    +       ++    +  F   P +  L    +G+  
Sbjct: 62  ERRAWEEHNTPIGPPCPDHIPKPPSFPVHAVPRLIPAARLIFTDAPPVTALPLNRQGWAS 121

Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML--------TGGSSGPIDRAFFFNS 163
           L  L+S    L   K    + LS L E  ++GL +L        TGG+SG      +   
Sbjct: 122 LCRLLS-TGRLRAAKGDCILHLSDLLEF-SDGLHLLLWPQAGRPTGGASG------WRTQ 173

Query: 164 SQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRES--QVVQLAYTH-ELPLVATNNSLFL 220
           +Q   +R       F  R+++ +  H  YD    +  QV++    H  LP +A+   +  
Sbjct: 174 AQQLTRR-------FAGRMHLLM--HPRYDGADAAFFQVLETESHHLGLPTIASAAPMMH 224

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
                   DVL A+     V    R  +   +  L++ +EM+ IF     A+     ++ 
Sbjct: 225 HGSRRRLADVLTAIRLRRKVDDLGRHALANGEQRLRSEAEMLRIFKGHEGAVARAYALSE 284

Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
           + +F L       P  +       Q+     L   A  GL+ R   GA  K       + 
Sbjct: 285 QLTFSLDELRYEYPSEVSGTETPAQR-----LHRLAHEGLKWRYPAGAPEK------VKA 333

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            L  EL +I ++K+  YFL V D +Q+A+   I +  GRGS A SV  Y L +T + P  
Sbjct: 334 MLAHELTLIGKLKYEPYFLTVHDIVQFARSRGI-LCQGRGSAANSVVCYCLGVTSVSPEM 392

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            +++FERF++  R   PD D+DF  +RR+EVI+++  +YG  R     T    + K A+R
Sbjct: 393 GTMVFERFVSEARDEPPDIDVDFEHERREEVIQHIYERYGRHRAGLCATVIHYRGKRAIR 452

Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL---LEISQ 516
           +VGRA+ +    +  L   +        S   + +  R RE  L DP   RL   L +  
Sbjct: 453 EVGRAMGLTEDTISALSSQLWGF----FSASGL-EAERMREIGL-DPEDHRLKQTLTLVH 506

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           ++ G  RH S H  G +I +  L +LVP+      D  V  ++   I+  G++K D L L
Sbjct: 507 QINGFPRHLSQHVGGFIITEGRLDELVPIENATMEDRTVICWDKDDIDTLGILKVDVLSL 566

Query: 577 KTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
             LT ++K+ D +AQ       L+ +P +D   Y +L    ++G+FQ+ES      L  M
Sbjct: 567 GMLTCIRKAFDLIAQHHQTSYTLATLPPEDPAVYDMLCRADSVGVFQVESRAQMNFLPRM 626

Query: 636 QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
           +P    D++  V++ RPGPI  D +  Y  R+NG+E++      +  +L +T GV ++QE
Sbjct: 627 RPRNFYDLVIEVAIIRPGPIQGDMVHPYIRRRNGEEEVSFPSDALGEVLGKTLGVPLFQE 686

Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           Q MQIA + +G++  +AD LRR++   K    + + +  F+ G  +NG     A   F  
Sbjct: 687 QAMQIAIVGAGFTPEQADRLRRSLATFKKHGSVSEFRALFLRGMQRNGYDAEFAERCFSQ 746

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           +  F  YGF +SHAA++A++ Y +AW+K H+P  F  A +  +        +  +DAR+ 
Sbjct: 747 IEGFGSYGFPESHAASFALLVYASAWIKCHHPGIFACALLNSQPMGFYAPAQIVRDAREH 806

Query: 813 NIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
            +Q+ P  +N    D  +     G   +      IKG+    A  +  A  +  +  ++D
Sbjct: 807 GVQVRPVCINASFWDNVMEPDGHGGLALRLGFRQIKGLSEEDASWLTAARGNG-YHQVDD 865

Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
              R     L   V+E L  A A    G +R + L
Sbjct: 866 VWRRAG---LGPSVIERLAEADAFAACGLTRREAL 897


>gi|158425528|ref|YP_001526820.1| DNA polymerase III alpha subunit [Azorhizobium caulinodans ORS 571]
 gi|158332417|dbj|BAF89902.1| DNA polymerase III alpha subunit [Azorhizobium caulinodans ORS 571]
          Length = 1175

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 245/874 (28%), Positives = 408/874 (46%), Gaps = 86/874 (9%)

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R+++    HR G D  R +++ +LA    +PL+ATN+ L+ SE+    HDVL  +   T 
Sbjct: 255  RVWLGAALHRRGSDGRRLARLRRLASAARVPLLATNDPLYASEDRRPLHDVLTCIREGTT 314

Query: 240  VSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +    R      + +++  +EM  +F   PEAL  T  +  R  F L             
Sbjct: 315  LEAAGRRLEANGERHIRTPNEMARLFRACPEALLETQCLLERIGFSL------------- 361

Query: 299  ECDDIQKEEENELRNKAVA---GLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMK 352
               D++ E  +E   +  A    LE  + + A A+ Y A   +  +  L  E  +I + K
Sbjct: 362  --GDLKYEYPHEPVPEGWAPQDWLEHLVTEAAHAR-YGAVLPEKVKALLAEEFALIRQEK 418

Query: 353  FSGYFLIVADFIQWAKKNNIPV-GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            F+ YFL V D +++A+    P+   GRGS A S+  + L IT +DP++++LLF RF++ D
Sbjct: 419  FAYYFLTVHDLVRFARAQEPPILCQGRGSAANSIVCFLLGITSVDPVQYNLLFSRFVSED 478

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+DF  +RR+EV++YV  +YG  R     T    + ++A+R+V + L +    
Sbjct: 479  RGEPPDIDVDFEHERREEVMQYVYRRYGRHRAGIAATVIHYRGRSAVREVSKVLGLTEDV 538

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY-----RHAS 526
              RL  L+        S     D  R +EA   DP    +  +   LE L      RH S
Sbjct: 539  SSRLAGLVWG------SHSGDMDARRMQEAGF-DPDNPEMARLRFILEPLLSAPFPRHLS 591

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             H  G V+    L + VP++    +D    +++   I+  GL+K D L L  LT ++K+ 
Sbjct: 592  QHVGGFVLTQDRLDETVPIHHAAMADRSFIEWDKDDIDVLGLMKVDVLALGMLTCIRKAF 651

Query: 587  DF-----LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            +      L ++ ++VDL+    DD   Y +L    ++G+FQ+ES      L  ++P  + 
Sbjct: 652  ELMRAHGLGEKTLEVDLA---SDDEAVYDMLCKGDSIGVFQVESRAQINMLPRLKPRKLY 708

Query: 642  DIIALVSLYRPGPIDNIVV--YNNRKNGKEKI-----VSIHPL--IDPMLKETQGVIIYQ 692
            D+   V++ RPGPI+  +V  Y  R+ G E          HP   +  +L ET GV ++Q
Sbjct: 709  DLTIQVAIVRPGPIEGEMVHPYLRRRAGLEDWSFPSPTPPHPANELHDLLGETYGVPLFQ 768

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            EQ M++A + + ++  +A+ LRRAM   +    +   +   + G  + G ++  A+  F+
Sbjct: 769  EQAMKLAIVAADFTPRQANGLRRAMATFRNPGTIHSFRAMMVEGMVRRGYTRDFALRCFK 828

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  F  YGF +SHA ++A + Y +AW+K H+P  F  A +  +        +  +DAR+
Sbjct: 829  QIEGFGSYGFPESHALSFARLVYVSAWIKCHHPAVFACALLNSQPMGFYAPAQIVRDARE 888

Query: 812  FNIQIMPPSVNTPCVDF---KVGDNRIYYSLA--AIKGVGTTTARHIMEASADKPFDSLE 866
              +++ P  VN    D    +  + R+   L    ++G     A  I+ A A  PF S+E
Sbjct: 889  HGVEVRPVEVNASEWDNTLEEAANGRLALRLGFRQVEGFRELWAAEIVAARASGPFSSVE 948

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-N 925
            D   R     L R  L  L  A AL   G  R           + A W E  RT + E  
Sbjct: 949  DLARRA---HLPRAGLRLLADADALRSLGLER-----------RDALW-EVRRTPEGELP 993

Query: 926  IFAHEKG---TFSDKITLEKFSV-ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            +FA  +         + L   S  E  +V ++  +        GHP+   +P+  + G+ 
Sbjct: 994  LFAAARAGELKAERDLPLPAMSAAEQVAVDYQTTR----LSLKGHPMAFLRPLFAERGVL 1049

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
               ++ A   G  +R A +V+ +Q+    KG+ I
Sbjct: 1050 SSAQTAAARAGAKVRTAGIVLIRQRPG--KGNAI 1081


>gi|261755958|ref|ZP_05999667.1| error-prone DNA polymerase [Brucella suis bv. 3 str. 686]
 gi|261745711|gb|EEY33637.1| error-prone DNA polymerase [Brucella suis bv. 3 str. 686]
          Length = 846

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 200/629 (31%), Positives = 315/629 (50%), Gaps = 50/629 (7%)

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
           H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R   
Sbjct: 162 HQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLE 221

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILP-RFIEKEC 300
              + +LK   EMV +F D PEA+  T +     +F L          PI P +  ++  
Sbjct: 222 KNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPGKTAQQHL 281

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D+  E         +   +V   QG I K             EL +IAR+++  YFL V
Sbjct: 282 YDLVWEGAARHYGADIIPPKV---QGLINK-------------ELALIARLEYEPYFLTV 325

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            D +  A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+
Sbjct: 326 YDIVTHAREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDV 384

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DF  +RR+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   + 
Sbjct: 385 DFEHERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVW 444

Query: 481 NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                 +  Q I      R+A L   +P + R +E++  L G  RH S H  G V+    
Sbjct: 445 GLSGGGIDRQHI------RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDR 498

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------ 592
           L + VP+           +++   I++ GL+K D L L  LT ++K+ D + Q       
Sbjct: 499 LDETVPIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYG 558

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
           G K+ L+ +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 559 GEKLTLASLPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRP 618

Query: 653 GPI--DNIVVYNNRKNGKEKIV--SIHPLIDP------MLKETQGVIIYQEQVMQIAQLL 702
           GPI  D +  Y  R++G+E     S  P   P      +L +T+GV ++QEQ M+IA   
Sbjct: 619 GPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEA 678

Query: 703 SGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
           + ++  EA+ LRRAM    K   +   +++ I G    G  +T A N F  +  F +YGF
Sbjct: 679 AKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGF 738

Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            +SHAA++A + Y +AW+K H+P  F AA
Sbjct: 739 PESHAASFAHLVYISAWLKCHHPEVFAAA 767


>gi|187923381|ref|YP_001895023.1| DNA polymerase III subunit alpha [Burkholderia phytofirmans PsJN]
 gi|187714575|gb|ACD15799.1| DNA polymerase III, alpha subunit [Burkholderia phytofirmans PsJN]
          Length = 1193

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 240/879 (27%), Positives = 404/879 (45%), Gaps = 102/879 (11%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL------------ 56
           P++  L   +++S L GA   + ++++  +    A+AITD  +L   +            
Sbjct: 19  PAYAELHCLTNFSFLRGASHPHELVEQAMSRGYSALAITDECSLAGVVRAHTALKEIKTE 78

Query: 57  ------EFSQKACAAGIQPII--GCQLDIDMQDN----------------------LKMT 86
                 E   KA  A  +     G Q++   Q+                       L +T
Sbjct: 79  RERQQKEREDKANTAQSEAPSEDGTQIEASQQETAPQETAEAEAPKPLPHLIIGSELNLT 138

Query: 87  NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI-------CLSWLQEI 139
           ++   PF T   +V L +   GY  L EL++ +      K S R+        L  L  +
Sbjct: 139 DETGDPFCT---LVALATNRNGYGNLSELIT-LARSRADKGSYRLGPSDFTASLPHLAHL 194

Query: 140 GT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYR 196
            T  + ++ML      P   A   ++ + A   L +F      R ++ L+    G D  +
Sbjct: 195 KTLPDCVLMLV-----PQRTATLSHTLRCAHW-LASFA---AQRAWIALELWQTGSDDLQ 245

Query: 197 ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLK 255
              +  ++    LPLVA    L  +       D + A+   T +SQ         + +++
Sbjct: 246 IDALRMISKASGLPLVAAGGVLMHARSRKPLQDTMTAIGLVTPLSQCGHALEANAERHMR 305

Query: 256 NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
            R  +  ++    + LE T+ IA  C F L       P    +E     +   + LR   
Sbjct: 306 TRVRLGKLYPR--DTLEETLRIAALCRFSLDELKYEYP----EELVPAGESPSSYLRKLV 359

Query: 316 VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
           +AG   R  +G   K         +++ EL +IA +K+  YFL V D + +A+  NI + 
Sbjct: 360 MAGAMERWPKGIDLKRI------GQIEKELGLIADLKYEKYFLTVHDIVSFARSRNI-LC 412

Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
            GRGS A S+  Y L +T+IDP+  ++L ERF++  R   PD D+DF   RR+EVI+Y+ 
Sbjct: 413 QGRGSAANSIVCYCLHVTEIDPVHMNMLIERFISRARNEPPDIDVDFEHQRREEVIQYIY 472

Query: 436 NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
            KYG  R A   +  +  A++AL+DVG+AL +  S ++R+ K            Q   D 
Sbjct: 473 TKYGRHRAALTASLITYHARSALKDVGKALGLEVSLIERISK-----------SQQWWDG 521

Query: 496 SRFREARLADPSVD-------RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
           +      LA+   D        L+ ++++L    RH S H  G VI    LS+LVP+   
Sbjct: 522 TDAVAKYLAEAGFDANSHITQNLIRLTKELRAFPRHLSQHVGGFVIAKDKLSRLVPIENA 581

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV-KVDLSLIPFDDH 606
              D  V +++   I+   L+K D L L  L+ ++++L+F+A +RG  K  +  IP +D 
Sbjct: 582 TMKDRSVIEWDKDDIDALKLLKVDVLALGMLSAIRRALEFVALRRGFPKFSVQDIPREDR 641

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
             Y +     T+G+FQ+ES   +  L  ++P+   D++  V++ RPGPI   +V  Y  R
Sbjct: 642 AVYEMCGHADTIGVFQIESRAQQSMLPRLKPNKYYDLVIEVAIVRPGPIQGGMVHPYLRR 701

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKE 723
           K G E +      + P+L+ T GV I+QEQVM +A + + Y+  +AD LRRAM   +   
Sbjct: 702 KQGLEAVDYAKDELRPVLERTLGVPIFQEQVMHLAMVAAKYTGEQADQLRRAMAAWRRSG 761

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            + K ++       K G  +     I + +  F +YGF +SHAA++A++ Y +AW+K + 
Sbjct: 762 NLAKYQKDLNERMLKRGYEQEFIDRICKQIEGFGEYGFPESHAASFALLVYLSAWLKRYE 821

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           P  FLA  +  +        +  QDA++  ++++PP V 
Sbjct: 822 PAAFLAGLLNSQPLGFYSPSQLVQDAKRHGVEVLPPDVT 860


>gi|326445257|ref|ZP_08219991.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC
            27064]
          Length = 1141

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 284/1083 (26%), Positives = 488/1083 (45%), Gaps = 110/1083 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL V S +S   GA    +++ + A      +A+TD +    A+  ++    AGI+P
Sbjct: 3    AFTHLHVASGFSARYGASHPQDLVRRAAGLGMGVLALTDRDTAAGAVRHAKACRDAGIRP 62

Query: 70   IIGCQLDIDMQDN---------LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            + G  L +                +        P +  + LL  +A G+ ++  L+S  +
Sbjct: 63   LFGVDLAVAAHGTATRPPRRPRTPVRGGAHVAEPRL-RVTLLARSATGWAQICRLISAAH 121

Query: 121  ------LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
                       ++++R CL        + +++L G +S P+ RA       +A++ L  +
Sbjct: 122  ARPVDGFPAASREALRECLG-------KDVMVLLGPASEPV-RALAAGRGDLAQRLLAPW 173

Query: 175  KKLFGDRLYVNLQRHR------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
            ++  GD L +    +       G  R   +  + L     +P V TN   +   E +   
Sbjct: 174  QEAAGDGLRLEAVAYGLPGLGPGSTRL-AAHTLALGDRLGIPAVLTNAVRYERREQHRLA 232

Query: 229  DVLMA------VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA-----------L 271
            DVL A      V    V+   +R       YLK+  EM  + + +  A           L
Sbjct: 233  DVLDAARLLRPVPRRGVLDPGER-------YLKSGPEMAEVAARVAAAAGAPAARGRRLL 285

Query: 272  ENTVEIARRCSFILQVHAPIL------PRFIEKECDDIQKEEENE---LRNKAVAGLEVR 322
              T E+A +C        P+       P F E +      E  +    LR +  AG+ VR
Sbjct: 286  GETAEVAAQCEV-----DPVRDLGLGRPHFPEPQVVGAGAEPGDGMRLLRRRCEAGMTVR 340

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                 + +   A D   +L  EL VI ++ +  YFL VA  +   +   I V   RGSGA
Sbjct: 341  ----GLDRDARALD---QLHHELAVIEQLGYEAYFLAVAQVVADTRAMGIRVA-ARGSGA 392

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GS+  ++L I   +PL   LLFERFL+  R ++PD D+D    RR EV   +  ++G ER
Sbjct: 393  GSMVNHSLFIATANPLEHRLLFERFLSARRRTLPDIDLDVESHRRLEVYDRIFERFGSER 452

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            VA      + +A+ ALRD G AL +    VDR+ K  P+  A  +   A+A+    R+  
Sbjct: 453  VAVTGMPETYRARHALRDTGLALGIRPRTVDRIAKSFPHIRACDIR-SALAELPELRQLA 511

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
                    L E+++ L+ L R  + H  G+++    L   +P+ +      P+ Q +   
Sbjct: 512  RHAGRFGPLWELAEGLDALPRGYAMHPCGVILSSTSLLDRLPV-QPTPGGYPMVQADKHD 570

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSL---IPFDDHETYHLLTTKGTL 618
            +E  GL+K D LG++  + +  ++ +     G  +DL     +   D +T+ L+     L
Sbjct: 571  VEDMGLVKLDVLGVRMQSAMAHAVAEIRRTTGRHIDLDSPDHVDLGDEQTFALIRRGQVL 630

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP 676
            G FQ+ES G++  +  +QP  ++DIIA +SL+RPGP+   +   +   ++G E     HP
Sbjct: 631  GCFQIESPGVQDLIARLQPRHLQDIIADISLFRPGPVKGGMPARFIAARHGAETPRYPHP 690

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
             + P++ +T GV+I+ EQ+M+I ++L+G   + ADV RRA+     E + + +  F   A
Sbjct: 691  DLVPIMDDTYGVVIWHEQIMEILRVLTGCDRAAADVARRALAD--TERLPRVEAWFRRCA 748

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
            ++ G +  +   +++++ +F  YGF ++HA A+AV + Q+AW+KTHYP  F A    L+ 
Sbjct: 749  AERGYTPAVIGEVWDIIKEFGAYGFCRAHAVAFAVPAVQSAWLKTHYPAAFYAG--LLQH 806

Query: 797  D-NVEKIKKFCQDARQFNIQIMPPSVN----TPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            D  +   +   QDA+QF + I+P  +N       V+       +  +L+ I+G+ T  + 
Sbjct: 807  DPGMWAPRVLVQDAKQFGVTILPVDINHSRSAHSVEQTADGWGVRLALSTIRGITTAESA 866

Query: 852  HIMEASADKPFDSLEDFCSRV-DSKKLNRRVLESLVFAGALDCFG-YSRMQLLQSLDNIQ 909
             I    A +P+  L+D   R   S  L +R    L+  GAL   G  +R  LL     + 
Sbjct: 867  RI---EAAQPYTGLQDLWLRARPSLPLAQR----LITIGALGPQGRLTRRDLLLQATELH 919

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            + A    +NRT     +   ++        L + +  +       E  VL    S H L+
Sbjct: 920  RSA----RNRTTADGQLPLGDETHAGAPAGLPEMTGRDV---LNAEIDVLSIDVSRHLLE 972

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
             +  +L ++G        A  RG  + +A +  S Q      G R+ +VT  + +   + 
Sbjct: 973  HHHRLLAELGATDAHHLQAMHRGQQVLVAGVRASTQTPPVPSGKRVIFVTLEDGSGLVDV 1032

Query: 1030 NFF 1032
             FF
Sbjct: 1033 AFF 1035


>gi|332187677|ref|ZP_08389412.1| DNA polymerase III, alpha subunit [Sphingomonas sp. S17]
 gi|332012243|gb|EGI54313.1| DNA polymerase III, alpha subunit [Sphingomonas sp. S17]
          Length = 1097

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 233/857 (27%), Positives = 390/857 (45%), Gaps = 74/857 (8%)

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
            +PL+AT ++LF    D    D+L  +    T+ S   +     + +LK  +EM  +F+D 
Sbjct: 202  VPLLATTDALFAEPADRPVQDILTCIREGLTIRSAGRQLAANAERHLKPAAEMARLFADR 261

Query: 268  PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
            P A+  ++ I  R  F L   +   P     E  + Q   E  +R  A      R  +G 
Sbjct: 262  PGAVAESLAILDRIEFRLNHISYQYPDEPVPEGWEAQDWLEELVRQGAAE----RFPEGV 317

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV-GPGRGSGAGSVT 386
              K       R  LD EL +I   +++ YFL V D +++A+    P+   GRGS A S  
Sbjct: 318  PPK------LRATLDEELKLIRESEYAHYFLTVHDVVRYARSLEPPILCQGRGSAANSAV 371

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
             + L +T +DP +  LLF RF++ +R   PD DIDF  +RR+EVI+Y+  +YG  R A  
Sbjct: 372  CWILGVTSVDPTKHDLLFSRFVSAERKEPPDIDIDFEHERREEVIQYIYERYGRHRAAIA 431

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA-- 504
             T    + ++ +R+VGRAL +      RL   +        S     ++ RF E   +  
Sbjct: 432  ATVIHYRPRSTVREVGRALGLSEDITQRLTSTVWG------SFSQRFEEKRFHETGFSPD 485

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            +P + RL  +  +L G  RH S H  G V+    L + VP++          +++   I+
Sbjct: 486  NPEIGRLRTLVDRLLGAPRHLSQHVGGFVLTQGRLDETVPIHNGAMEGRTFIEWDKDDID 545

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVDLSLIPFDDHETYHLLTTKGTLGIF 621
            +  ++K D L L  LT ++K+ D +A  G+   K+D +L   +D   Y +L    ++G+F
Sbjct: 546  ELRIMKVDILALGMLTCIRKAFDLMAANGLPRPKLD-TLAQDEDKCVYEMLQKGDSIGVF 604

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKI--VSIHPL 677
            Q+ES      L  ++P    D++  V++ RPGPI+  +V  Y  R+  KEK+   S HP 
Sbjct: 605  QVESRAQINMLPRLKPARFYDLVVQVAIVRPGPIEGDMVHPYLRRRANKEKVEYPSPHPW 664

Query: 678  ------IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKE 730
                  +  +LK+T GV ++QEQ M++A + + ++  EA+ LRRAM   +    +   +E
Sbjct: 665  EGDADELKAILKDTYGVPLFQEQAMKLAIVAAKFTPDEANQLRRAMATFRNVGTIQNFRE 724

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            + + G  K G  +  A   F+ +  F  YGF +SHA ++A + Y +AW+K H P  F  A
Sbjct: 725  KMVGGMVKRGYEQDFAERCFKQIEGFGSYGFPESHALSFARLVYVSAWLKCHQPAIFTCA 784

Query: 791  SMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKG 844
             +  +        +  +DAR+   +++ P  VN    D ++     G   +      + G
Sbjct: 785  LLNAQPMGFYAPAQLVRDARENGKVEVRPVDVNYSGWDNRLERREDGALALRLGFRQVDG 844

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
                   HI + +   P++++E    R    KL RR L+ L  A A    G  R      
Sbjct: 845  FREEWGTHIADHA---PYEAIESVAIRA---KLPRRALDLLAQADAYRSLGRGR------ 892

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKG---TFSDKITLEKFSVENSSVRFENEQRVLGF 961
                 +  QW  +   +    +FA  +        ++ L    +   S +   + R    
Sbjct: 893  -----REGQWEARRMKSAQLPLFAAMQAPEMAAEPEVDLPPMPL---SEQVSADYRATRL 944

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI------ 1015
               GHP+   +  L   GI    +      G   ++A +V+ +Q+    KG+ I      
Sbjct: 945  SLKGHPMAFLRRELASEGILSAADLHNLADGRRAKVAGVVLVRQRPG--KGNAIFITIED 1002

Query: 1016 --GWVTFSEPAKEYEAN 1030
              G V     A+++EAN
Sbjct: 1003 ETGIVNALLWARDFEAN 1019


>gi|218674999|ref|ZP_03524668.1| DNA polymerase III protein, alpha subunit [Rhizobium etli GR56]
          Length = 821

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 203/688 (29%), Positives = 335/688 (48%), Gaps = 42/688 (6%)

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL +I  MK++ YFL V   +++A+   I +  GRGS A S   Y L IT IDP    LL
Sbjct: 34   ELALIKEMKYAPYFLTVFSIVKFARSQGI-LCQGRGSAANSAICYILGITSIDPDTNDLL 92

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERF++ +R   PD D+DF  +RR++VI+++   YG ++ A   T    +AK A+RDVG+
Sbjct: 93   FERFVSRERDEPPDIDVDFEHERREQVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGK 152

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL---LEISQKLEG 520
            AL +P   +  L   +        S      D   RE  L +PS  RL   L+++++L G
Sbjct: 153  ALGLPEDVIKALSSGM-------WSWSEELPDRNIRELNL-NPSDRRLALALKLARQLMG 204

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              RH   H  G V+    L  LVP+      D  + +++   +E    +K D L L  LT
Sbjct: 205  APRHLGQHPGGFVLTHDRLDDLVPIEPATMKDRQIIEWDKDDVEALKFMKVDVLALGMLT 264

Query: 581  LLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
             + K+ D + + +  ++DL+ IP +D  TY ++    TLG FQ+ES      L  ++P+ 
Sbjct: 265  CMNKAFDLIREHKDDELDLATIPQEDAATYAMIRKADTLGTFQIESRAQMSMLPRLKPET 324

Query: 640  IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
              D++  V++ RPGPI   +V  Y  R+ GKEK     P ++ +L  T GV ++QE  M+
Sbjct: 325  FYDLVMQVAIVRPGPIQGNMVHPYLRRREGKEKPEYPTPELEAVLGRTLGVPLFQESAMK 384

Query: 698  IAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            +A + +G++  EAD LR++M   K    + + K++ +SG  KNG S   A   F  L  F
Sbjct: 385  VAMVCAGFTGGEADQLRKSMATFKFTGGVSRFKDKLVSGMIKNGYSPEFAEKTFGQLEGF 444

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
              YGF +SHAA++A+I+Y + ++K H+P  F AA +  +        +   DA+   +++
Sbjct: 445  GSYGFPESHAASFALIAYASNYVKCHFPDVFCAALLNSQPMGFYAPAQIVGDAKNHGVEV 504

Query: 817  MPPSVNTP---CVDFKVGD---NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
             P  +N     C   ++G    + +   +  ++G+    A  I+ A  ++ F+S++D   
Sbjct: 505  RPVCINKSRWDCTLERIGTGDRHAVRLGMRMVRGLAVADAARIVAARMNREFESVDDVWR 564

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            R +   +    L+ L  A A           L SL   ++ A W  K   ++   +FA  
Sbjct: 565  RSN---VPTEALDQLAEADA----------FLPSLKLQRRDAIWAIKALRDEPLPLFA-A 610

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRV------LGFYFSGHPLDVYKPILRKMGIKGYE 984
                  K+  E+   +    R      V      +G     HP+   +  L+K  I    
Sbjct: 611  AAEREAKVIPEQQEPQVRLRRMTEGHNVVQDYSHVGLTLRDHPITFLRQDLQKRNIVTCS 670

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            E++    G  +  A +V+ +Q   + KG
Sbjct: 671  EAMNARDGRWLMAAGLVLVRQMPGSAKG 698


>gi|167648416|ref|YP_001686079.1| DNA polymerase III subunit alpha [Caulobacter sp. K31]
 gi|167350846|gb|ABZ73581.1| DNA polymerase III, alpha subunit [Caulobacter sp. K31]
          Length = 1117

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 230/834 (27%), Positives = 382/834 (45%), Gaps = 64/834 (7%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           K+ ++  LQ  +++S L GA     ++    A    A+ + D N+L   +     A    
Sbjct: 2   KTHAYAELQATTNFSFLRGASHAQELMLTGQALGLTAVGVADRNSLAGVVRAWTAAKDLK 61

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I+ + GC+LD                    PS++   S  E + RL    +R+  + Q +
Sbjct: 62  IRALTGCRLDF---------------MDGAPSLLCYPSDREAFGRL----TRLLTVGQRR 102

Query: 127 QSVRIC-LSWLQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                C LSW   +   EG + L       +D AF  + +++A        +L G R+++
Sbjct: 103 AGKGECHLSWKDFLEHAEGQLALIV-PPARLDEAFEADLARIA-------GELRG-RVWL 153

Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
              R +   D  R S++  LA     P+VATN+ L+   E     DV+  +     ++Q 
Sbjct: 154 AASRAYAAQDLKRLSRLADLAREARAPMVATNDVLYHGPERRPLQDVMTCIREGCTITQA 213

Query: 244 D-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R     + ++K  +EM  +F   P+A+E T+EI  R  F L       P     E   
Sbjct: 214 GFRLEANAERHIKTPAEMARLFERWPQAVERTIEIVERIGFDLGDLKEQYP----DEPVP 269

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             K     L +    G   R   G   K         +L  EL +IA+M +  YF+ V D
Sbjct: 270 PGKTAMQHLTDLTWQGAAWRYPNGVSPK------VADQLREELRLIAKMDYPNYFITVHD 323

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +  A++  I +  GRGS A S   + L +T IDP    LLF RF++ +R   PD D+DF
Sbjct: 324 IVHKAREMGI-LCQGRGSAANSSVCFCLGVTAIDPTEHRLLFTRFISENRGEPPDIDVDF 382

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
             +RR+EV++YV  +YG E  A   T    + ++A+RDVG+AL +       L   +   
Sbjct: 383 EHERREEVMQYVYKRYGREYAAICCTVIHYRPRSAIRDVGKALGLTEDITAILANTVWG- 441

Query: 483 PAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                S      D   ++  L   +P + R + ++ +L    RH S H  G V+  R L 
Sbjct: 442 -----SWGDGLPDEHIKQTGLDPNNPQIARAIALATELLQHPRHLSQHVGGFVLTKRRLD 496

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKV-DL 598
           + VP+      D    +++   I+   L+K D L L  LT +Q++   L A  G  + DL
Sbjct: 497 ETVPIGNAAMKDRTFIEWDKDDIDSLKLMKVDILALGMLTAIQRAFGMLRADHGQPITDL 556

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
           + +P +    Y +L+   ++G+FQ+ES      L  ++P+   D++  V++ RPGPI  D
Sbjct: 557 ADVPVEVKGVYDMLSVADSVGVFQVESRAQMSMLPRLKPNKFYDLVIEVAIVRPGPIQGD 616

Query: 657 NIVVYNNRKNGKEKIVSIHPL--------IDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            +  Y  R+ G EK     P         +  +L  T GV ++QEQ M +A   + ++  
Sbjct: 617 MVHPYLRRRQGLEKAEWPAPSPEHGHKDELREILGNTFGVPLFQEQAMSLAIEAAKFTPD 676

Query: 709 EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
           EAD LR+AM   K   +  + +++F+ G  + G  +  A   F+ +  F  YGF +SHAA
Sbjct: 677 EADGLRKAMATFKNLGDPGEYRDKFVEGMVRRGYERDFATRCFKQIEGFGSYGFPESHAA 736

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
           ++A + Y +AW+K  +P  F AA +  +     +  +  +DAR+  +++  P V
Sbjct: 737 SFAKLVYISAWIKWAWPDVFCAALINSQPMGFYQPAQLVRDAREHGVEVRAPDV 790


>gi|316935042|ref|YP_004110024.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris DX-1]
 gi|315602756|gb|ADU45291.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris DX-1]
          Length = 1180

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 199/653 (30%), Positives = 322/653 (49%), Gaps = 39/653 (5%)

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
           +RG D+ R  ++ ++A    +P +ATN+ L+         DVL  V   T + +  R   
Sbjct: 221 YRGDDKRRLDRLRRIAVAARVPCIATNDVLYHHASRRALQDVLTCVREKTTIDKAGRRLE 280

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKECDDIQ 304
              + +LK  +EM  +F   P+A+  T+  A R  F L   + H P        E     
Sbjct: 281 GNAERHLKPAAEMARLFRADPDAIAETLRFAGRIGFTLDELKYHYP-------DEPVPPG 333

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
           K  +  L++    G++    QG   K       +  +D EL +I R  ++ YFL V D +
Sbjct: 334 KTAQAHLKDLTEQGIKQYFPQGISDK------LKATIDKELAIIERRGYAHYFLTVHDIV 387

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           ++A+  +I +  GRGS A S   Y L IT +DP    LLFERF++ +R   PD D+DF  
Sbjct: 388 RYARSQDI-LCQGRGSAANSAVCYVLGITCVDPTEIDLLFERFVSEERDEPPDIDVDFEH 446

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            RR+EV++Y+  +YG  R A + T    + ++A+RDVG+AL +       L   +     
Sbjct: 447 SRREEVMQYIYRRYGRHRAAIVATVIHYRPRSAIRDVGKALGLSEDVTAALADTVWG--- 503

Query: 485 HPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              S     ++ + R+A L   +P + R +E++ +L G  RH S H  G V+    L   
Sbjct: 504 ---SWGRGLNEMQVRQAGLDPHNPMIGRAVELATELIGFPRHLSQHVGGYVLTQDRLDSY 560

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
           VP+     +D    +++   I+   ++K D L L  LT ++K  D +AQ +GV+  LS I
Sbjct: 561 VPIGNAAMADRTFIEWDKDDIDAVKMMKVDVLALGMLTCIRKGFDLIAQHKGVRFQLSDI 620

Query: 602 PF-DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
              DD++ Y +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGPI  D +
Sbjct: 621 KSEDDNKVYKMLQRGESIGVFQVESRAQMNMLPRLKPRCFYDLVIEVAIVRPGPIQGDMV 680

Query: 659 VVYNNRKNGKEKIVSIHPL--------IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             Y  R+NG+E +V   P         +  +L +T GV ++QEQ M+IA   + ++  EA
Sbjct: 681 HPYLRRRNGQEPVVYPSPAGEAGDKDELRQILGKTLGVPLFQEQAMRIAIEAAHFTPDEA 740

Query: 711 DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
           + LRRAM   +    + K + + +      G   T A N FE +  F  YGF +SHAA++
Sbjct: 741 NQLRRAMATFRNVGTIGKFEAKMVGNLMARGYDATFAKNCFEQIKGFGSYGFPESHAASF 800

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           A + Y +AWMK  +P  F  A +  +        +   DAR   + + P  V+
Sbjct: 801 AKLVYVSAWMKCEHPDAFCCALLNSQPMGFYAPAQIVGDARSNRVDVRPVDVS 853


>gi|194291640|ref|YP_002007547.1| error-prone DNA polymerase [Cupriavidus taiwanensis LMG 19424]
 gi|193225544|emb|CAQ71490.1| DNA polymerase III, alpha subunit [Cupriavidus taiwanensis LMG
           19424]
          Length = 1121

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 228/815 (27%), Positives = 390/815 (47%), Gaps = 68/815 (8%)

Query: 99  IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
           +VL+    EG+  L EL++      Q K S R+    L E    G   L G    P   A
Sbjct: 137 LVLIAQHREGFGNLSELITLGRRRAQ-KGSYRLHPEDLSEPAA-GEAHLRGM---PGCVA 191

Query: 159 FFFNSSQVAEKRLLT----FKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVA 213
                     +RLL      + +FG+R ++ L++ +G+ D    +++  ++    +PL A
Sbjct: 192 LLLPDYCAEPERLLAQAEWCRAVFGERAWIALEQLQGHADALHRARLEAVSAQTGVPLAA 251

Query: 214 TNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEAL 271
                          DVL A+     +++     + P  + +L+ R  +  ++    EAL
Sbjct: 252 AGAVTMHVRSRKPLSDVLTAIRLGQPLAECGMA-LAPNAEQHLRMRQVLSRLYPR--EAL 308

Query: 272 ENTVEIARRCSFILQVHAPILPRFI----EKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
             T++IA  C F L       P  +    E     ++KE E   R +   GL+    +  
Sbjct: 309 AQTLKIAESCDFSLATLRYEYPEELVPPGETPISYLRKEVERGKRERFPNGLKPEWEEQL 368

Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
             +              L +I    +  +FL V D +++A+   I +  GRGS A S+  
Sbjct: 369 KEE--------------LELIEEKHYEPFFLTVHDIVRFARSRGI-LCQGRGSAANSLVC 413

Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
           + L +T++ P + +LLF RFL+ +R   PD D+DF   RR+EVI+Y+ +KYG  R A   
Sbjct: 414 FCLYVTEVSPEQANLLFGRFLSRERDEPPDIDVDFEHQRREEVIQYIYDKYGRHRAALAA 473

Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
           +  + ++++ALRDVGRAL +  S V+++ K        P  +  IA      E+    P+
Sbjct: 474 SLITYRSRSALRDVGRALGIDASVVEQVVKGQAWWDGGPGFVDKIARYGLDPES----PA 529

Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
           V +   ++ +L G  RH S H  G VI    LS+LVP+     +D  V Q++   +E  G
Sbjct: 530 VQQWASLTAQLRGFPRHLSQHVGGFVIARHKLSRLVPIENAAMADRSVIQWDKDDLESLG 589

Query: 568 LIKFDFLGLKTLTLLQKSLDFL-------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
           L+K D L L  L+ ++++L+ +       A+ G+   +  IP +D  TY ++    T+G+
Sbjct: 590 LLKVDVLALGMLSAIRRALEMIPNPSRDPARAGLPARMEDIPKEDKPTYDMICRADTIGV 649

Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNG----KEKIVSI 674
           FQ+ES   +  L  +QP    D++  V++ RPGPI   +V  Y  R+      ++  V  
Sbjct: 650 FQIESRAQQSMLPRLQPREYYDLVVEVAIVRPGPIQGGMVHPYLKRREAFRRTQKPPVYF 709

Query: 675 HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFI 733
           + +I+ +L  T GV I+QEQVMQ+A   +G+S  +AD LRR+M   + + ++ + ++  +
Sbjct: 710 NAVIEKVLGRTLGVPIFQEQVMQLAIDAAGFSPGQADQLRRSMAAWRRRGDLRQHQDALV 769

Query: 734 SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
              + NG  ++ A+ I + +  F +YGF +SHAA++A + Y ++W+K H+P  FL A + 
Sbjct: 770 RALTGNGYPESFALAICKQIEGFGEYGFPESHAASFAKLVYVSSWLKCHHPAAFLCALLN 829

Query: 794 LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----------------GDNRIYY 837
            +        +  QDAR+ +++++P  V     D  +                   R+  
Sbjct: 830 SQPMGFYSPSQLVQDARRHDVEVLPVDVTISRWDSTLEPVAESDAAIIRQERPPHPRVRL 889

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            L  +KG+    A  I  A A + FDS+ED   R 
Sbjct: 890 GLGRVKGMREAAALRIEAARAQRAFDSVEDLALRA 924


>gi|299134862|ref|ZP_07028054.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2]
 gi|298590672|gb|EFI50875.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2]
          Length = 1108

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 275/1057 (26%), Positives = 455/1057 (43%), Gaps = 112/1057 (10%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL----EFSQKA 62
            K   +  + + +++S L G       + + +  + P I I D N L   +    E +   
Sbjct: 2    KVTDYAEIGITTNFSFLRGGSQPQEYVHQASEHRLPVIGIADRNTLAGVVRAYSELANHE 61

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                 + +IG +L         +   G       P I++       Y RL +L+S   L 
Sbjct: 62   VKYKPRLLIGARL---------VFTDG------TPDILVYPRDRAAYGRLCQLLSHGKL- 105

Query: 123  DQGKQSVRICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             Q ++   +         +EG L++LT      +   F    + VA K L   K+   D 
Sbjct: 106  -QAEKGECLLTLDDLLDFSEGQLLVLT------LPHRF---ETTVALKVLGRLKQSRADG 155

Query: 182  LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            +++     +RG DR R S++ Q+A T  +PL+ATN+ L+         DVL  +   T +
Sbjct: 156  VWLAASLLYRGDDRRRLSRLYQIAATGRVPLLATNDVLYHHPARRPLQDVLTCILEKTTI 215

Query: 241  SQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                +  +   + ++K   EMV +F DLPEA+  T+  A R +F L       P     E
Sbjct: 216  HAIGKKLQANAERHMKPGYEMVRLFRDLPEAVAETMRFADRITFALDELKYQYP----DE 271

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               + K  +  L +   AG++     G   K       +  ++ EL +I ++ ++ YFL 
Sbjct: 272  PVPLGKTAQEHLTDLVNAGIQSYFPSGIDEK------LQATIEKELRLIEKLGYAHYFLT 325

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +Q+A+  N+ +  GRGS A S   Y L IT ++P    +LFERF++  R+  PD D
Sbjct: 326  VHDIVQYARSQNV-LCQGRGSAANSAVCYMLGITSVNPAETDVLFERFISEKRLEPPDID 384

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF   RR+EV++YV  +YG  R A + T    + ++A+RDVG+AL +       L   +
Sbjct: 385  VDFEHSRREEVMQYVYRRYGRHRAAIVATVIHYRPRSAIRDVGKALGLTEDVTAALADTV 444

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPS---VDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                   VS      D + R+A   DP    + R +E++ +L    RH S H  G V+  
Sbjct: 445  WGSWGTGVS------DMQIRQAGF-DPQNGMIRRAVELATELIEFPRHLSQHVGGYVLTQ 497

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVK 595
              L+  VP+      D    +++   I+   ++K D L L  LT ++K  D +A  +G +
Sbjct: 498  DSLNTYVPIGNAAMEDRTFIEWDKDDIDTLKMMKVDVLALGMLTCIRKCFDLVADHKGKR 557

Query: 596  VDLSLIPF---DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
              LS I     D    + +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 558  YQLSDINAEKDDSGPVFDMLCRGESLGVFQVESRAQMNMLPRLKPRTFYDLVIEVAIVRP 617

Query: 653  GPIDNIVVY---NNRKNGKEKIVSIHPL------IDPMLKETQGVIIYQEQVMQIAQLLS 703
            GPI   +V+     R+   E+I   +P       +  +L +T GV ++QEQ M+IA   +
Sbjct: 618  GPIQGNMVHPYLKRRQMKPEEIEYPYPKSGNKNELKDVLCKTLGVPLFQEQAMRIAMAAA 677

Query: 704  GYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
             ++  EA+ LRRAM   +    M K ++R +    K G     A + F+ +  F  YGF 
Sbjct: 678  EFTPEEANGLRRAMATFRNVGTMPKFEKRMVGRMIKRGYDPAFAQSCFDQIKGFGSYGFP 737

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            +SHAAA+A + Y +AW+K  +P  F    +  +        +   DARQ  +++    V+
Sbjct: 738  ESHAAAFAQLVYVSAWLKCFHPDAFACGLLNSQPMGFYAPAQIVGDARQNGVEVREIDVS 797

Query: 823  TPCVDFKVGDNR-----IYYSLAAIKGV--------------GTTTARH----IMEASAD 859
                   +G+       ++     I G               G T +      I+ A   
Sbjct: 798  HSFSQNTLGERSGKYHVLHLGFRQIDGFKCADPDEERWRRIQGKTKSEDWGEAIVAARLR 857

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
            + F SLEDF       KL +R L  L  A A    G  R   L ++  +           
Sbjct: 858  QSFTSLEDFARET---KLPKRALILLADADAFRSLGLDRRSALWAIRRLPDNVSLPLFQS 914

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            T   E           D   L +  +    V    + + +     GHP++  +    K G
Sbjct: 915  TAAREQ-------PDEDSAPLPQMPLPEEVV---ADYQTIRLSLKGHPMEFLRATFTKQG 964

Query: 980  IKGYEESVATIRGNN----IRLAAMVVSKQQKKTRKG 1012
            I     S A I   N    +R A +V+ +Q+  + KG
Sbjct: 965  IV----SCAAIAHENDKRRVRCAGVVLVRQRPGSSKG 997


>gi|307294093|ref|ZP_07573937.1| DNA polymerase III, alpha subunit [Sphingobium chlorophenolicum L-1]
 gi|306880244|gb|EFN11461.1| DNA polymerase III, alpha subunit [Sphingobium chlorophenolicum L-1]
          Length = 1159

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 230/871 (26%), Positives = 391/871 (44%), Gaps = 83/871 (9%)

Query: 181  RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R+++ +  H G  DR     +  +A +  +PL+ATN++L+ +  D    DVL  + H T 
Sbjct: 217  RVWLGVSHHHGGKDRRIADHLASVARSLSVPLLATNDALYAAPSDRPLQDVLNCIRHGTT 276

Query: 240  VSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            V++     +   + +LK   EM  + +  P+A+  ++ +     F L             
Sbjct: 277  VAKAGTLLQANAERHLKPPDEMARLHALWPDAVAQSMRLLSMIDFDL------------- 323

Query: 299  ECDDIQKEEENELRNKAVAGLE--VRLAQGAIAKGYHAQDY----RQRLDFELNVIARMK 352
              D ++ E  +E   +  +  +    L   A A+ Y  +      RQR++ EL  IA   
Sbjct: 324  --DQLRYEYPHEPVPEGWSPQDWLAHLVWEAAARRYEGRTMPDPLRQRVEQELCFIAEHG 381

Query: 353  FSGYFLIVADFIQWAKKNNIPV-GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            ++ YFL V D +++A++   P+   GRGS A S   + L +T +DP R  LLF RF++ D
Sbjct: 382  YAYYFLTVHDVVKFAQEQKPPILCQGRGSAANSAVCFLLGVTSVDPERHDLLFSRFISAD 441

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+DF  +RR+EV++Y+  +YG  R     T    ++++A+R+V +AL +    
Sbjct: 442  RGEPPDIDVDFEHERREEVMQYIYRRYGRHRAGIAATVIHYRSRSAVREVAKALGLSEDI 501

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREA--RLADPSVDRLLEISQKL--EGLYRHAST 527
              R+   +        S      + R  EA   L +P + RL  +  +L  E   RH S 
Sbjct: 502  AARIGSTVWG------SYSGDLGEQRLIEAGFDLRNPQIVRLRALLDQLLREPFPRHLSQ 555

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            H  G V+    L + VP++     D    +++   I+  GL+K D L L  L+ ++++ D
Sbjct: 556  HVGGFVLTQDRLDETVPIHHAAMEDRSFIEWDKDDIDALGLMKVDVLALGMLSCIRRAFD 615

Query: 588  FLAQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             + ++G     + VDL     DD   Y +L    ++G+FQ+ES      L  ++P  + D
Sbjct: 616  LMREQGLGDHQLTVDLEA---DDDAVYDMLCKGDSIGVFQVESRAQINMLPRLKPRSLYD 672

Query: 643  IIALVSLYRPGPIDNIVV--YNNRKNGKEKI--VSIHPLIDP------MLKETQGVIIYQ 692
            +   V++ RPGPI+  +V  Y  R+ G+EK+   S  P   P      +L +T GV ++Q
Sbjct: 673  LTVQVAIVRPGPIEGDMVHPYLRRRCGEEKVDYPSPSPEHGPANELRSLLGKTCGVPLFQ 732

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            EQ M++A + + +S ++A+ LRRAM   +    +   +E+ I G  K G     A   F+
Sbjct: 733  EQAMRLAIVAADFSDADANRLRRAMATFRNVGTIHHFREKMIKGMVKRGYEAEFAQRCFK 792

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  F  YGF +SHA ++A + Y +AW+K H P  F  A +  +        +  +DAR 
Sbjct: 793  QIEGFGSYGFPESHALSFARLVYVSAWIKCHQPAVFACALLNSQPMGFYAPAQIVRDARD 852

Query: 812  FNIQIMPPSVNTPCVDFKV-------------GDNR---IYYSLAAIKGVGTTTARHIME 855
              + +    VN    D  +             G  R   +   L  I G     A  ++ 
Sbjct: 853  HGVTVHDADVNMSGWDNGLEPLLRLRKSHRGEGQGRALALRLGLRQIDGFREDWADRLVA 912

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
            A AD  F ++E+   R     L  R L  L  A A    G  R           + A W 
Sbjct: 913  ARADGLFATMEELARRA---GLPGRALRLLADADACRSMGQDR-----------RAALWE 958

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
             +   +    +FA  +     +       V   S + E +  V      GHP+   +P+ 
Sbjct: 959  ARRTPSDELPLFAAARARELGEEPDAMLPVMPLSEQVEADYLVTRLSLKGHPMQFLRPVF 1018

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               G+    E+ A   G  ++ A +V+ +Q+
Sbjct: 1019 AAEGVLSCAETAAAKNGARVKTAGVVLVRQR 1049


>gi|300022283|ref|YP_003754894.1| DNA polymerase III subunit alpha [Hyphomicrobium denitrificans ATCC
            51888]
 gi|299524104|gb|ADJ22573.1| DNA polymerase III, alpha subunit [Hyphomicrobium denitrificans ATCC
            51888]
          Length = 1115

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 227/841 (26%), Positives = 393/841 (46%), Gaps = 86/841 (10%)

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMV 261
            +A +  +PL+A N+ L+   E     D+L  +     + +   R     + +LK+  EM 
Sbjct: 213  IAKSSNVPLIAVNDVLYDVPEQRPVQDILTCIREGLRIEAAGTRLEANAERHLKSSEEME 272

Query: 262  SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE--EENELRNKAVAGL 319
             +F D P A+  T ++ RR SF L                +++ E  EE         G 
Sbjct: 273  RLFRDYPSAVAATQDLLRRISFSL---------------GELKYEYPEEPVPAGWTPQGW 317

Query: 320  EVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
               L+     + Y +   +  +Q++  EL +IA++ ++ YFL V D +++A +  I +  
Sbjct: 318  LEHLSWQKAGERYPSGVPEKVQQQVTEELKLIAQLDYAPYFLTVYDIVRYANEKGI-LCQ 376

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGS A S   Y L IT +DP + +LLF RF++ +R   PD D+DF  +RR+EVI+Y+  
Sbjct: 377  GRGSAANSAVCYVLGITAVDPEQHNLLFARFISSERREPPDIDVDFEHERREEVIQYIYE 436

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            +YG ER   + T    + ++A+R+VG+ L +      R+   +       +S      ++
Sbjct: 437  RYGRERAGLVATVIRYRPRSAIREVGKVLGLSEDITSRIAGTVWGSWGSKLS------ET 490

Query: 497  RFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
              R+A +   +P + + +  + ++ G  RH S H  G V+    L ++VP+      D  
Sbjct: 491  HLRQAGIDHRNPVIGQAIAFATRILGFPRHLSQHVGGFVLARGRLDEIVPIGNAAMDDRT 550

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLT 613
              +++   I+  GL+K D L L  LT ++K+ D +    G   +L+ +P +  + Y +L 
Sbjct: 551  FIEWDKDDIDVLGLMKVDVLALGMLTCIRKAFDLIRTHEGESFNLATLPAEQPDIYAMLQ 610

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKI 671
               ++G+FQ+ES      L  ++PD   D++  V++ RPGPI  D +  Y  R+  +E++
Sbjct: 611  KGDSIGVFQVESRAQINMLPRLRPDKFYDLVIQVAIVRPGPIQGDMVHPYLRRRKNREEV 670

Query: 672  V--SIHPLIDP-----MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKE 723
               S  P  DP     +L  T GV ++QEQ MQ+A + + ++ +EA+ LRRAM   +   
Sbjct: 671  TFPSPKPPHDPDELKNVLSRTLGVPLFQEQAMQLAMVAAQFTDAEANQLRRAMATFRHVG 730

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             + K +   +      G  +  A   FE +  F +YGF +SHAAA+A + Y +A++K  Y
Sbjct: 731  TIGKFESLLVERMVARGYDRDFAERCFEQIKGFGEYGFPESHAAAFARLVYISAFIKCRY 790

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P  F  A +  +        +  +DA +  +++ P  VN    D+   DN +        
Sbjct: 791  PAAFACALLNSQPMGFYAPAQIVRDAHEHGVEVYPADVNAS--DW---DNTL------CA 839

Query: 844  GVGTTTARHIMEASADKPFDSL-EDFCSR-VDSKKLNRRVLESLVFAGAL---------- 891
            G G  TA  I      +  D L ED+C R +D ++     L+SL     L          
Sbjct: 840  GAGGKTALRI----GFRQIDGLSEDWCKRLIDMRRNGYADLDSLAQRTRLPQRALRLLAD 895

Query: 892  -DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEK----GTFSDKITLEKFSV 945
             DCF        +S+   ++ A W  +   +  E  +FA  +    G  +D         
Sbjct: 896  ADCF--------RSVGIHRRDALWSARRLPDADELPLFAAAREADLGEEADAQLPAMSLS 947

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
            EN +V ++  +        GHP++  + I R  GI    E  A   G+  R+A +V+ +Q
Sbjct: 948  ENIAVDYQTTR----LSLKGHPMECLRDIFRGEGIASCAELAAQRDGSWGRVAGVVLVRQ 1003

Query: 1006 Q 1006
            +
Sbjct: 1004 R 1004


>gi|260567285|ref|ZP_05837755.1| error-prone DNA polymerase [Brucella suis bv. 4 str. 40]
 gi|260156803|gb|EEW91883.1| error-prone DNA polymerase [Brucella suis bv. 4 str. 40]
          Length = 846

 Score =  284 bits (726), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 199/629 (31%), Positives = 314/629 (49%), Gaps = 50/629 (7%)

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
           H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R   
Sbjct: 162 HQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLE 221

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILP-RFIEKEC 300
              + +LK   EMV +F D PEA+  T +     +F L          PI P +  ++  
Sbjct: 222 KNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPGKTAQQHL 281

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D+  E         +   +V   QG I K             EL +IAR+++  YFL V
Sbjct: 282 YDLVWEGAARHYGADIIPPKV---QGLINK-------------ELALIARLEYEPYFLTV 325

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            D +  A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+
Sbjct: 326 YDIVTHAREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDV 384

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DF  +RR+EV++YV ++Y  +R A + T  S ++++ +RDVG+AL +       L   + 
Sbjct: 385 DFEHERREEVMQYVYDRYSRDRAAIVATVISYRSRSVIRDVGKALGLSEDVTAALANTVW 444

Query: 481 NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                 +  Q I      R+A L   +P + R +E++  L G  RH S H  G V+    
Sbjct: 445 GLSGGGIDRQHI------RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDR 498

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------ 592
           L + VP+           +++   I++ GL+K D L L  LT ++K+ D + Q       
Sbjct: 499 LDETVPIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYG 558

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
           G K+ L+ +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 559 GEKLTLASLPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRP 618

Query: 653 GPI--DNIVVYNNRKNGKEKIV--SIHPLIDP------MLKETQGVIIYQEQVMQIAQLL 702
           GPI  D +  Y  R++G+E     S  P   P      +L +T+GV ++QEQ M+IA   
Sbjct: 619 GPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEA 678

Query: 703 SGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
           + ++  EA+ LRRAM    K   +   +++ I G    G  +T A N F  +  F +YGF
Sbjct: 679 AKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGF 738

Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            +SHAA++A + Y +AW+K H+P  F AA
Sbjct: 739 PESHAASFAHLVYISAWLKCHHPEVFAAA 767


>gi|294011130|ref|YP_003544590.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S]
 gi|292674460|dbj|BAI95978.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S]
          Length = 1189

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 266/1095 (24%), Positives = 462/1095 (42%), Gaps = 142/1095 (12%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE------- 57
            L K+P F  L   +++S L GA    +++ +  A     + I D N++   +        
Sbjct: 40   LPKAPPFAELVAATNFSFLRGASHPQDMVARAIALGLEGLGIADRNSVAGVVRAHVARKR 99

Query: 58   FSQKACAAGI-------QPI-------IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
            + ++  AA +       QP+         C+ D+ +    ++     TP      IV   
Sbjct: 100  WPERMRAALLEARKEAGQPLELSEEEERACRTDLRLVVGARLVFVDGTP-----DIVAYP 154

Query: 104  STAEGYQRLIELVSRMYLLD-QGKQSVRI--CLSWLQEIGTEGLIMLTGGSSG------- 153
            +T  G+  L +L++   L   +G   +R     ++L ++    L+++  GS+        
Sbjct: 155  ATRRGWGELTKLLTLGNLRSVKGDCILRYEDLTAYLDDL----LLIVMPGSTATQQTAHR 210

Query: 154  -PIDRAFFFNSSQVA-----------------EKRLLTFKKLFGDRLYVNLQ-RHRGYDR 194
             P+D       SQ A                 E  L+    L   R+++    R  G D 
Sbjct: 211  KPVDYEHDDRPSQEAIRQGHLSLVPPPAPSDLEALLVRLSHLAPRRVWLAAALRRDGRDA 270

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHY 253
             R +Q   L+    +PL+AT ++L+ S       DVL  +   T +++  R      + +
Sbjct: 271  RRLAQFKGLSAITGVPLLATMDALYASPAQRPLQDVLGCIREGTTIARAGRLLEANAERH 330

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILPRFIEKECDDIQKEE 307
            + + +E+  +F D PEA+  + +   R  F L        H P+   +  ++  +     
Sbjct: 331  VHDPAEIAHLFRDCPEAVAESGDFLSRVHFTLDQLSYEYPHEPVPEGWTAQQWLEELTWS 390

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               +R  A   L+VR                Q L  E ++IA+  ++ YFL V D + +A
Sbjct: 391  AAHVRYGARLPLKVR----------------QTLQEEFSLIAKRNYAYYFLTVHDIVAFA 434

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A S+  + L +T IDP R  LLF RF++ DR   PD D+DF  +RR
Sbjct: 435  RTKGI-LCQGRGSAANSMVCFLLGVTSIDPFRHDLLFSRFVSEDRNEPPDIDVDFEHERR 493

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++Y+  +YG  R     T    ++++A+R+V + L +      RL   +        
Sbjct: 494  EEVMQYIYERYGRHRAGIAATVIHYRSRSAVREVAKVLGLGEDVSARLSSTVWG------ 547

Query: 488  SLQAIADDSRFREARLA--DPSVDRLLEISQKL--EGLYRHASTHAAGIVIGDRPLSQLV 543
            S  +  +D R  EA  A  +P + +L  +  +L  E   RH S H  G V+    L + V
Sbjct: 548  SYSSDMNDVRIVEAGFALDNPQIAQLKAVVDQLLSEPFPRHLSQHVGGFVLTQNRLDETV 607

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P++     D    +++   I+  GL+K D L L  L+ ++++ D + ++G     + VD+
Sbjct: 608  PLHHAAMEDRSFIEWDKDDIDALGLMKVDVLALGMLSCIRRAFDLMREQGLGDHQLTVDM 667

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
                  D   Y +L    ++G+FQ+ES      L  ++P  I D+   V++ RPGPI+  
Sbjct: 668  EA---QDEAVYDMLCKGDSIGVFQVESRAQINMLPRLKPRSIYDLTVQVAIVRPGPIEGN 724

Query: 659  VV--YNNRKNGKEKIVSIHPL--------IDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            +V  Y  R+ G EK+    P         +  +L ET GV ++QEQ M++A   +G+  +
Sbjct: 725  MVHPYLRRRCGDEKVEYPRPSPHHGPADELQKLLGETYGVPLFQEQAMKLAITAAGFEPA 784

Query: 709  EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EAD LRRAM   +    +   +E+ I G  + G     A   F+ +  F  YGF +SHA 
Sbjct: 785  EADALRRAMATFRNVGTIHHFREKMIRGMVERGYEAEFAERCFKQIEGFGSYGFPESHAL 844

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++A + Y +AW+K H P  F  A +  +        +  +DAR+  + +    VN    D
Sbjct: 845  SFARLVYVSAWIKCHQPAVFACALLNSQPMGFYAPAQIVRDAREHGVTVHDVDVNMSGWD 904

Query: 828  ------FKVGDNR----------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                   +  D            +   L  ++G     A+ ++ A  +  F ++ED   R
Sbjct: 905  NALEPLLRSRDGGRGEGEGRALALRLGLRQVEGFREDWAKRLVAARKEGLFSTMEDLARR 964

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
                 L  R L  L  A A    G  R           + A W  +   +    +FA  K
Sbjct: 965  AG---LPARALRLLADADACRSLGKDR-----------RTALWEARRTPSDELPLFAAAK 1010

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                 +           S   E +  V      GHP+   +P+    G+    +  A   
Sbjct: 1011 ARELGEEPDAMLPAMALSEHVEADYLVTRLSLKGHPMQFLRPVFAAEGVLSCAQISAARN 1070

Query: 992  GNNIRLAAMVVSKQQ 1006
            G  ++ A +V+ +Q+
Sbjct: 1071 GTLVKTAGVVLVRQR 1085


>gi|296162446|ref|ZP_06845237.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1]
 gi|295887259|gb|EFG67086.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1]
          Length = 1195

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 223/770 (28%), Positives = 365/770 (47%), Gaps = 72/770 (9%)

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC--------- 132
            L +T++   PF T   +V L +   GY  L EL++ +      K S R+          
Sbjct: 135 ELNLTDETGEPFCT---LVALATNRNGYGNLSELIT-LARSRADKGSYRLGPSDFTDSLP 190

Query: 133 -LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHR 190
            L+ LQ +  + ++ML         RA   + +      L +F      R ++ L+    
Sbjct: 191 HLAHLQTL-PDCVLMLVP------QRAATLSHTLRCAHWLASFA---AQRAWIALELWQT 240

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVT 249
           G D  +   +  ++    LPLVA    L  +       D + A+   T +S         
Sbjct: 241 GSDDLQIDALRMISKASGLPLVAAGGVLMHARSRKPLQDTMTAIGLVTPLSACGHALEAN 300

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            + +++ R  +  ++    + LE T+ IA  C F L       P    +E   + +   +
Sbjct: 301 AERHMRTRVRLGKLYPR--DTLEETLRIAALCRFSLDELKYEYP----EELVPVGESPSS 354

Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            LR   +AG   R  +G   K         +++ EL +IA +K+  YFL V D + +A+ 
Sbjct: 355 YLRKLVMAGAMERWPEGMDLKRI------GQIEKELALIADLKYEKYFLTVHDIVSFARS 408

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            NI +  GRGS A S+  Y L +T+IDP+  ++L ERF++  R   PD D+DF   RR+E
Sbjct: 409 RNI-LCQGRGSAANSIVCYCLHVTEIDPVNMNMLIERFISRARNEPPDIDVDFEHQRREE 467

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
           VI+Y+  KYG  R A   +  +  A++AL+DVG+AL +  S ++R+ K            
Sbjct: 468 VIQYIYTKYGRHRAALTASLITYHARSALKDVGKALGLEASLIERISK-----------S 516

Query: 490 QAIADDSRFREARLADPSVD-------RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
           Q   D +      LA+   D        L+ ++ +L    RH S H  G VI    LS+L
Sbjct: 517 QQWWDGTDAVAGYLAEAGFDANSHITQNLIRLTGELRSFPRHLSQHVGGFVIAKDKLSRL 576

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV-KVDLSL 600
           VP+      D  V +++   I+   L+K D L L  L+ ++++L+F+A +RG  K  +  
Sbjct: 577 VPIENATMKDRSVIEWDKDDIDALKLLKVDVLALGMLSAIRRALEFVALRRGFPKFRVQD 636

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
           IP +D   Y +     T+G+FQ+ES   +  L  ++P+   D++  V++ RPGPI   +V
Sbjct: 637 IPREDRAVYEMCGHADTIGVFQIESRAQQSMLPRLKPNKYYDLVIEVAIVRPGPIQGGMV 696

Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM- 717
             Y  RK G E +      + P+L+ T GV I+QEQVM +A + + YS  +AD LRRAM 
Sbjct: 697 HPYLRRKQGLEPVDYAKDELRPVLERTLGVPIFQEQVMHLAMVAAEYSGEQADQLRRAMA 756

Query: 718 -----GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
                G   K + D  K        K G  +     I + +  F +YGF +SHAA++A++
Sbjct: 757 AWRRSGNLAKYQKDLNKRML-----KRGYEQEFIDRICKQIEGFGEYGFPESHAASFALL 811

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            Y +AW+K + P  FLA  +  +        +  QDA++  ++++PP V 
Sbjct: 812 VYLSAWLKRYEPAAFLAGLLNSQPLGFYSPSQLVQDAKRHGVKVLPPDVT 861


>gi|86750673|ref|YP_487169.1| error-prone DNA polymerase [Rhodopseudomonas palustris HaA2]
 gi|123292295|sp|Q2IU52|DNAE2_RHOP2 RecName: Full=Error-prone DNA polymerase
 gi|86573701|gb|ABD08258.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris HaA2]
          Length = 1165

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 202/657 (30%), Positives = 328/657 (49%), Gaps = 47/657 (7%)

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
           +RG D+ R +++ ++A   ++P +ATN+ L+         DVL  V   T + +  R   
Sbjct: 211 YRGDDKRRLARLRRIAAAADVPGIATNDVLYHHPSRRALQDVLTCVRDKTTIDKAGRRLE 270

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILP----RFIEKEC 300
              + +LK  +EM  +F    +A+  T+  A R SF L   + H P  P    +  ++  
Sbjct: 271 GNAERHLKPAAEMARLFRADLDAVAETLRFADRISFTLDELKYHYPDEPVPPGKTAQQHL 330

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
           +D+ +E    +      G+  RL +  IAK             EL +IA+  ++ YFL V
Sbjct: 331 EDLTREG---IATYFPNGISDRL-RATIAK-------------ELTLIAKRDYAHYFLTV 373

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            D +++A+  NI +  GRGS A S   Y L IT +DP    LLFERF++ +R   PD D+
Sbjct: 374 HDIVRYARSQNI-LCQGRGSAANSAVCYVLGITCVDPTEIDLLFERFVSEERDEPPDIDV 432

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DF   RR+EV++Y+  +YG  R A + T    + ++A+RDVG+AL +       L   + 
Sbjct: 433 DFEHSRREEVMQYIYRRYGRHRAAIVSTVIHYRPRSAIRDVGKALGLSEDVTAALADTVW 492

Query: 481 NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                 +S      + + R+A L   +P + R +E++ +L G  RH S H  G V+    
Sbjct: 493 GSWGKGLS------EMQVRQAGLDPTNPMIGRAVELATELIGFPRHLSQHVGGYVLTQDR 546

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
           L   VP+     +D    +++   I+   ++K D L L  LT ++K  D +AQ +GV+  
Sbjct: 547 LDSYVPIGNAAMADRTFIEWDKDDIDAVKMMKVDVLALGMLTCIRKGFDLIAQHKGVRFQ 606

Query: 598 LSLIPF-DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI- 655
           LS I   DD+  Y +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGPI 
Sbjct: 607 LSDIKSEDDNNVYQMLQRGESIGVFQVESRAQMNMLPRLKPRCFYDLVIEVAIVRPGPIQ 666

Query: 656 -DNIVVYNNRKNGKEKIVSIHPL--------IDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            D +  Y  R+NG+E +V   P         +  +L +T GV ++QEQ M+IA   + ++
Sbjct: 667 GDMVHPYLRRRNGQEPVVYPSPSGEAGDKNELQQILGKTLGVPLFQEQAMRIAIEAAHFT 726

Query: 707 LSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
             EA+ LRRAM   +    + K + + I      G   T A N FE +  F  YGF +SH
Sbjct: 727 PDEANQLRRAMATFRNVGTIGKFESKMIGNLMARGYDATFAKNCFEQIKGFGSYGFPESH 786

Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           AA++A + Y +AWMK  +P  F  A +  +        +   DAR   +++ P  V+
Sbjct: 787 AASFAKLVYVSAWMKCEHPDAFCCALLNSQPMGFYAPAQIVGDARANKVEVRPVDVS 843


>gi|75676440|ref|YP_318861.1| error-prone DNA polymerase [Nitrobacter winogradskyi Nb-255]
 gi|74421310|gb|ABA05509.1| error-prone DNA polymerase, DnaE-like protein [Nitrobacter
           winogradskyi Nb-255]
          Length = 1175

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 232/838 (27%), Positives = 385/838 (45%), Gaps = 68/838 (8%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL----EFSQKAC 63
           +P +  + + +++S L GA      + + +  + P I I D N L   +    E      
Sbjct: 7   TPCYAEIGIATNFSFLHGASHPQEYVHQASELRLPVIGIADRNTLAGVVRAYTELKNPEV 66

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
               + +IG +L                     P I++       Y RL +L++R     
Sbjct: 67  RYKPRLLIGSRLVF---------------IDGTPDILIYPRDRNAYGRLCQLLTR----- 106

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            GK++       L+    + L+  + G    +       +++  E  L   ++   D ++
Sbjct: 107 -GKRAATKGECHLK---LDDLLDFSEGQLLVLALPHRLETARAMEV-LDRLRQASADGVW 161

Query: 184 VNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           +     +RG DR R  ++ ++A T  +PL+ATN  L+         DVL  V   T V  
Sbjct: 162 LAASLLYRGDDRRRLLRLQRIAATAHVPLLATNEVLYHHPARRPLQDVLTCVREKTAVDA 221

Query: 243 -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEK 298
              R  +  + +LK+  EM  +F DLPEA+  T+  A R  F L   Q   P  P  + K
Sbjct: 222 IGRRLELNAERHLKSACEMEKLFRDLPEAIAETMRFASRIEFTLDQLQYQYPDEPVPLGK 281

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                Q+  E+     A     VR+              R+ L  EL +I R+K++ YFL
Sbjct: 282 SA---QRHLEDLTWAGAHKYFPVRIPPRT----------RKVLHKELRLIRRLKYAHYFL 328

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V D ++WA+  +I +  GRGS A S   Y L +T +DP +  LLFERF++ +R+  PD 
Sbjct: 329 TVHDIVRWARDQDI-LCQGRGSAANSAVCYVLGVTSVDPTKVDLLFERFISRERLEPPDI 387

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DF   RR+EV++YV  +YG  R A I T    + ++A+RDVG+AL +       L   
Sbjct: 388 DVDFEHSRREEVMQYVYRRYGRHRAAIIATVIHYRPRSAIRDVGKALGLTEDVTAALADT 447

Query: 479 IPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
           +       VS      D++ R+A     +P V R + ++ +L G  RH S H  G V+  
Sbjct: 448 VWGSWGDEVS------DAQIRQAGFDPRNPMVRRAVALATELIGFPRHLSQHVGGYVLTQ 501

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595
             L   VP+      +    +++   ++   ++K D L L  LT ++K  D +A+ +G +
Sbjct: 502 DRLDTYVPIGNAAMENRTFIEWDKDDVDALRMMKVDVLALGMLTCIRKCFDLMAEHKGER 561

Query: 596 VDLSLI-PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +L+ I   DD E Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGP
Sbjct: 562 RELADIRSRDDDEVYQMLQRGESLGVFQVESRAQMNMLPRLRPRTFYDLVIEVAIVRPGP 621

Query: 655 IDNIVVY---NNRKNGKEKIVSIHPL------IDPMLKETQGVIIYQEQVMQIAQLLSGY 705
           I   +V+     R    EKI   +P       +  +L +T GV ++QEQ M+IA   + +
Sbjct: 622 IQGDMVHPYLKRRAMDPEKIDYPYPKNGDRNELRNVLHKTLGVPLFQEQAMRIAIEAAKF 681

Query: 706 SLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
           +  EA+ LRRAM   +    + K + + +      G     A N FE +  F  YGF +S
Sbjct: 682 TSEEANGLRRAMATFRHVGTIGKFEAKMVGNMIARGYDPVFARNCFEQIKGFGSYGFPES 741

Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           HAA++A + Y +AW+K  +P  F    +  +        +   DAR+  +++ P  V+
Sbjct: 742 HAASFAQLVYVSAWLKCFHPDAFCCGLLNSQPMGFYAPAQIVGDARKNGVEVRPVDVS 799


>gi|314927242|gb|EFS91073.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL044PA1]
 gi|328905983|gb|EGG25758.1| error-prone DNA polymerase [Propionibacterium sp. P08]
          Length = 739

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 203/708 (28%), Positives = 324/708 (45%), Gaps = 99/708 (13%)

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+   I +  GRGS A S   YAL IT +DP+ + L FERFL+  R   PD D+DF 
Sbjct: 1    MEFARSRGI-LCQGRGSAAASAVCYALGITVVDPVFYGLPFERFLSVLREEEPDIDVDFD 59

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D          
Sbjct: 60   ARRREEVIQYVYTKYGRRNAAQVADVITYRQRSAIRDMAKALGYSQGQQDAW-------- 111

Query: 484  AHPVSLQAIADDSRFREARLADPS---------VDRLLEISQKLEGLYRHASTHAAGIVI 534
                        SR  E RL  PS          D +  ++Q++ GL RH   H+AG+V+
Sbjct: 112  ------------SRQMEKRLVSPSPQDSDGPEIPDDVTGLAQQVVGLPRHLGIHSAGMVL 159

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-G 593
               P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D +++  G
Sbjct: 160  TREPVGRICPIEPARMRGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSFSFDLISRHCG 219

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ IP ++   Y +L    ++G+FQ+ES      L  ++P C  D+   + L RPG
Sbjct: 220  RSWALASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGTLPRLKPRCFYDLAVEIGLIRPG 279

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+    V  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   ++++AD
Sbjct: 280  PVQGGAVHPYIRRRTGAELVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTVADAD 339

Query: 712  VLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAMG K+  E +D  + +   G + +GI    A +I+  +  FA++GF +SHA ++A
Sbjct: 340  LLRRAMGSKRGMERIDSLRTKLFEGMAAHGIDDDTAQDIYARIESFANFGFAESHALSFA 399

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV--DF 828
             + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V  D 
Sbjct: 400  GLVYTSAWLKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADL 459

Query: 829  KV--------------------------------------GDNR------IYYSLAAIKG 844
            ++                                      GD+R      +   L+ + G
Sbjct: 460  ELLDSCHEGLGGEGLETGMDDCLHDHDESEIGAFDPNHDDGDHRRDTHFAVRLGLSDVSG 519

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            + T TA  I+E      F SL+D   RVD   L+   +E+L  AGA D    SR   L  
Sbjct: 520  ISTETATRIVEERERGFFTSLDDLARRVD---LSSEEVEALALAGAFDDLVGSRRGALWQ 576

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  I   A         + +   A +     +   +E            ++ R  G    
Sbjct: 577  IGQINGVA-------PGQLDVQVATQPPLLPELTQMELLG---------DDLRATGISTD 620

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             HP+   +  L + G+   ++      G  I +A +V  +Q+  T  G
Sbjct: 621  DHPIRHMRDALNRRGVVRVDQLDGVESGRRIEVAGVVTHRQRPGTAGG 668


>gi|148554041|ref|YP_001261623.1| DNA polymerase III subunit alpha [Sphingomonas wittichii RW1]
 gi|148499231|gb|ABQ67485.1| DNA polymerase III, alpha subunit [Sphingomonas wittichii RW1]
          Length = 1196

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 224/871 (25%), Positives = 386/871 (44%), Gaps = 74/871 (8%)

Query: 169  KRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            + L   K+   DR+++ L   + G DR R +   +LA    +PL+ATN++L+ +      
Sbjct: 251  RALSILKRAAPDRVWLGLSMPYSGRDRRRIATYARLAKEVGVPLLATNDALYATPGQRPL 310

Query: 228  HDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            HDV+  +     + +   R     + +LK   EM  +F D P+A+   V +  R  F L+
Sbjct: 311  HDVVTCIRLGLTLDEAGTRLAANGERHLKPGHEMARLFVDHPQAVAAGVALLDRIDFDLK 370

Query: 287  ------VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
                   H P+   +  +                   G    L +  IA  Y     ++ 
Sbjct: 371  QLKYEYPHEPVPEGWTPQ-------------------GWLEHLVEKGIAWRYGPNPEQKV 411

Query: 341  LDF---ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            LD    EL ++   +++ YFL V D + +A+   I +  GRGS A SV  Y L IT++DP
Sbjct: 412  LDLVETELKLVRDARYAYYFLTVHDVVAFARGEKI-LCQGRGSAANSVICYVLGITEVDP 470

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
            +   LLF RF++ DR   PD D+DF  +RR+EV+++V  +YG  R     T    + ++A
Sbjct: 471  VHNKLLFSRFISEDRNEPPDIDVDFEHERREEVMQHVYARYGRHRAGIAATVIHYRPRSA 530

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS---VDRLLEI 514
            +R++ + L +      +L   I        S  A  +  RF E    DP    + RL  +
Sbjct: 531  VREIAKVLGLSEDVAAKLTSTIWG------SYAATMEGKRFHETGF-DPGNVEIARLNML 583

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
             ++L    RH S H  G V+ +  L + VP++     D    +++   I+  GL+K D L
Sbjct: 584  VEQLLTFPRHLSQHVGGFVLTEDRLDETVPIHNAAMDDRTFIEWDKDDIDALGLMKVDVL 643

Query: 575  GLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
             L  LT ++K+   + A  G +  L+ IP +  E Y +L    ++G+FQ+ES      L 
Sbjct: 644  ALGMLTCIRKAFALIQAHTGTEYTLATIPKERKEVYDMLCKGDSIGVFQVESRAQINMLP 703

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVY---NNRKNGKEKIVSIH----------PLIDP 680
             ++P  + D++  V++ RPGPI   +V+     RK  +E  + I           P ++ 
Sbjct: 704  RLRPRTLYDLVVQVAIVRPGPIQGGMVHPYLKRRKEEREGRLVIDYPGPKGPDGAPELED 763

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKN 739
            +L +T GV ++QEQ M++A + + ++  EA+ LRRAM   +    M + + + + G    
Sbjct: 764  VLSKTLGVPLFQEQAMKLAIVAAKFTDGEANQLRRAMATFRHVGTMPEFEGKMVEGMVAR 823

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G  +  A   F  +  F  YGF +SHA ++A++ Y ++++K  YP  F  A +  +    
Sbjct: 824  GYPRDFAERCFAQIKGFGSYGFPESHAQSFALLVYASSYIKCRYPAVFACALLNSQPMGF 883

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIME 855
                +  +DAR+  +++    VN    D  +    G   +   L  ++G     A  I +
Sbjct: 884  YAPAQIVRDAREHGVEVRAADVNRSGWDNSLEGPPGRLALRIGLRQVEGFRQAWADEIAK 943

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
                  F S+E+   R    KL RR L  L  A A    G  R           + A W 
Sbjct: 944  VRGQGAFASIEELARRA---KLPRRALRLLADADAFRSLGLDR-----------RAALWE 989

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
             +   +    +FA  K     +           S     + ++      GHP+   + + 
Sbjct: 990  ARRTPDGELPLFAAAKARELGEEPDAMLPAMPLSEHVAADYQMTRLSLKGHPMQFLRDVF 1049

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            R+ G+    E      G   ++A +V+ +Q+
Sbjct: 1050 RREGVLSCAEVAQAKNGRRAKVAGVVLVRQR 1080


>gi|86143845|ref|ZP_01062213.1| DNA polymerase III alpha subunit [Leeuwenhoekiella blandensis MED217]
 gi|85829552|gb|EAQ48015.1| DNA polymerase III alpha subunit [Leeuwenhoekiella blandensis MED217]
          Length = 1002

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 259/1033 (25%), Positives = 466/1033 (45%), Gaps = 130/1033 (12%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            ++L  HS++SL  G LS   +L          IA+TD NN  + L F +KA    I+P++
Sbjct: 1    MYLNCHSTFSLRYGTLSEEELLALAEHYDLDCIALTDINNTSAGLNFVRKAKEKNIKPVL 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G    ID ++ ++               V L    EGY  L   +++   L +      I
Sbjct: 61   G----IDFRNGIEQC------------YVTLAKNNEGYLELNNFLAQH--LHKKIDFPEI 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-VNLQRHR 190
              ++                    +RA   + +   E   +      G  ++ +N  R  
Sbjct: 103  APAFENAFTIYAF-----------ERALELDKTHFTENEFI------GIGIHDLNKLRFS 145

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVT 249
             Y  Y +  V+ L  +            F S++D+ AH +L A+  + ++S+  +  +  
Sbjct: 146  QYSTYHDKLVLLLPVS------------FNSKKDFNAHRLLRAIDLNCLLSKLPKEEQAL 193

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK---E 306
            PD  +    ++ ++F D P+ + N+ E+ + C+   +          E++  +++     
Sbjct: 194  PDEIMFAPKKIENLFKDYPQIVSNSQEVLKSCNLNFKFAK-------ERQNQNLKTVFGS 246

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            E+N+  NK +A     L +  + + Y     +   RL+ EL +I +  F  +FLI    I
Sbjct: 247  EQNDY-NKLLA-----LCKKGLKERYEEITTEITDRLEKELKLIKKKDFVSFFLINWKII 300

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+  +     GRGSGA S+ AY L ITD+DP+   L FERF+N  R S PDFDIDF  
Sbjct: 301  EYARSKDY-FYVGRGSGANSIVAYLLRITDVDPIELDLYFERFMNEYRSSPPDFDIDFST 359

Query: 425  DRRDEVIRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              R++V  Y+  ++G + +VA + ++ + +   A+R++G+   +P +++D+L        
Sbjct: 360  WDREDVTAYIFEEFGKNNQVALLGSYVTFKHSGAVRELGKVFGLPKTEIDKLS------- 412

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                         +F+ + L D     +L+ +        + S HA GI+I D+P+    
Sbjct: 413  -----------SGKFKASEL-DTISQLILKYAAYFHKKPNYLSIHAGGILISDKPIHYFS 460

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP- 602
              +   + + P  QF+M   E  GL KFD LG + L  ++ ++  + Q   +  L  I  
Sbjct: 461  ATHLPPK-NFPTVQFDMHVAEDVGLCKFDILGQRGLGKIKDAVSIIKQNQPEAQLLDIRN 519

Query: 603  ----FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
                F D     ++     +G F +ES  MR  L+ +  +  + ++A  S+ RPG   + 
Sbjct: 520  PKPFFTDPNINAMIARAECIGCFYVESPAMRMLLKKLAVNDYQTLVAASSIIRPGVAKSG 579

Query: 659  VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            ++  Y  R    E+    HP++  ++ +T G+++YQE V+++A   +  +L EADVLRR 
Sbjct: 580  MMREYILRHRNSERRKEAHPVLWKIMPDTYGIMVYQEDVIKVAHHYAKLTLDEADVLRRG 639

Query: 717  MGKKI--KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            M  K   +EE    K++F S    NG  + +   I+  +  FA Y F K H+A+YAV SY
Sbjct: 640  MSGKFRSREEFQYVKDKFRSNCIANGEPEDVVDEIWRQIESFAGYAFAKGHSASYAVESY 699

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            Q+ ++K ++P+E++ A++        K + +  +A+     I  P +N   +   +  N 
Sbjct: 700  QSLYLKCYFPLEYMVATLN-NGGGFYKAEFYIHEAKMHGASIEAPCINKSEIQTSIYGNT 758

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            IY  L  ++G+   T   I+       + S +DF  RV    ++    E L+  GAL   
Sbjct: 759  IYLGLQHLEGLEKKTMLGIINNRVHSKYTSYDDFIQRV---PISLEQQEILIRIGALRSL 815

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-SSVRFE 953
            G  +  LL           W    + N    I  +E      KI+L+ F++    + + E
Sbjct: 816  GKDKHSLL-----------WEAHYKEN---TIPENESQQSFFKISLQNFTLPTFKTSKVE 861

Query: 954  ---NEQRVLGFYFSGHPLDVYKP-ILRKMGIKGY--EESVATIRGNNIRLAAMVVSKQQK 1007
               +   +LGF        ++ P  L K  +  Y   + +      N+++A  +V+ +  
Sbjct: 862  DAFDHMELLGF-------SLFNPFFLMKKSLADYLLAKELKLYIDQNVKVAGYLVTFKNT 914

Query: 1008 KTRKGSRIGWVTF 1020
            KT KG R+ + TF
Sbjct: 915  KTAKGLRMIFGTF 927


>gi|313835830|gb|EFS73544.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL037PA2]
 gi|314970780|gb|EFT14878.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL037PA3]
          Length = 739

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 203/708 (28%), Positives = 324/708 (45%), Gaps = 99/708 (13%)

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+   I +  GRGS A S   YAL IT +DP+ + L FERFL+  R   PD D+DF 
Sbjct: 1    MEFARSRGI-LCQGRGSAAASAVCYALGITVVDPVFYGLPFERFLSVLREEEPDIDVDFD 59

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D          
Sbjct: 60   ARRREEVIQYVYTKYGRRNAAQVADVITYRQRSAIRDMAKALGYSQGQQDAW-------- 111

Query: 484  AHPVSLQAIADDSRFREARLADPS---------VDRLLEISQKLEGLYRHASTHAAGIVI 534
                        SR  E RL  PS          D +  ++Q++ GL RH   H+AG+V+
Sbjct: 112  ------------SRQMEKRLVSPSPQDSDGPEIPDDVTGLAQQVVGLPRHLGIHSAGMVL 159

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-G 593
               P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D +++  G
Sbjct: 160  TREPVGRICPIEPARMRGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSFSFDLISRHCG 219

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ IP ++   Y +L    ++G+FQ+ES      L  ++P C  D+   + L RPG
Sbjct: 220  RSWALASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGTLPRLKPRCFYDLAVEIGLIRPG 279

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+    V  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   ++++AD
Sbjct: 280  PVQGGAVHPYIRRRTGAELVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTVADAD 339

Query: 712  VLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAMG K+  E +D  + +   G + +GI    A +I+  +  FA++GF +SHA ++A
Sbjct: 340  LLRRAMGSKRGMERIDSLRTKLFEGMAAHGIDDDTAQDIYARIESFANFGFAESHALSFA 399

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV--DF 828
             + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V  D 
Sbjct: 400  GLVYTSAWLKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADL 459

Query: 829  KV--------------------------------------GDNR------IYYSLAAIKG 844
            ++                                      GD+R      +   L+ + G
Sbjct: 460  ELLDSCHEGLGGEGLETGMDDCLHDHDESEIGAFDPNHDDGDHRRDTHFAVRLGLSDVSG 519

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            + T TA  I+E      F SL+D   RVD   L+   +E+L  AGA D    SR   L  
Sbjct: 520  ISTETATRIVEERERGFFTSLDDLARRVD---LSSEEVEALALAGAFDDLVGSRRGALWQ 576

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  I   A         + +   A +     +   +E            ++ R  G    
Sbjct: 577  IGQINGVA-------PGQLDVQVATQPPLLPELTQMELLG---------DDLRATGISTD 620

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             HP+   +  L + G+   ++      G  I +A +V  +Q+  T  G
Sbjct: 621  DHPIRHMRDALNRRGVVRVDQLDGVESGRRIEVAGVVTHRQRPGTAGG 668


>gi|170696620|ref|ZP_02887740.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M]
 gi|170138486|gb|EDT06694.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M]
          Length = 1197

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 192/627 (30%), Positives = 312/627 (49%), Gaps = 37/627 (5%)

Query: 209 LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDL 267
           LPLVA    L  +       D + A+  +T +S          + +++ R  +  ++   
Sbjct: 255 LPLVAAGGVLMHTRSRKPLQDTMTAIGLNTPLSACGHALEANAERHMRTRVRLSKLYPR- 313

Query: 268 PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
            + LE T+ IA  C F L      L     +E     +   + LR   +AG   R   G 
Sbjct: 314 -DTLEETLNIAALCRFSLDE----LKYEYPEELVPAGESPSSYLRKLVMAGAAERWPNGL 368

Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
             K         +++ EL++IA +K+  YFL V D + +A+  NI +  GRGS A S+  
Sbjct: 369 DLKRI------DQIEKELSLIADLKYEKYFLTVHDIVSFARSRNI-LCQGRGSAANSIVC 421

Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
           Y L +T+IDP+  ++L ERF++  R   PD D+DF   RR+EVI+Y+  KYG  R A   
Sbjct: 422 YCLHVTEIDPVHMNMLIERFISRARNEPPDIDVDFEHQRREEVIQYIYAKYGRHRAALTA 481

Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
           +  +   ++AL+DVG+AL +  S ++R+ K            Q   D S      LA+  
Sbjct: 482 SLITYHVRSALKDVGKALGLEASLIERISK-----------SQQWWDGSEAVAGYLAEAG 530

Query: 508 VD-------RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
            D        L+ ++++L    RH S H  G VI    LS+LVP+      D  V +++ 
Sbjct: 531 FDANSHITRNLIRLTKELRLFPRHLSQHVGGFVIAKDKLSRLVPIENATMKDRSVIEWDK 590

Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV-KVDLSLIPFDDHETYHLLTTKGTL 618
             I+   L+K D L L  L+ ++++L+F+A +RG  +  +  IP +D   Y +     T+
Sbjct: 591 DDIDALKLLKVDVLALGMLSAIRRALEFVALRRGFPQFRVQDIPREDRAVYEMCGHADTV 650

Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP 676
           G+FQ+ES   +  L  ++P+   D++  V++ RPGPI   +V  Y  RK G E I     
Sbjct: 651 GVFQIESRAQQSMLPRLKPNKYYDLVIEVAIVRPGPIQGGMVHPYLRRKQGLEPIDYAKD 710

Query: 677 LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISG 735
            + P+L+ T GV I+QEQVM +A + + Y+  +AD LRRAM   +    + K ++     
Sbjct: 711 ELRPVLERTLGVPIFQEQVMHLAMVAAKYTGEQADQLRRAMAAWRRTGNLAKYQKDLSDR 770

Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            S  G        I + +  F +YGF +SHAA++A++ Y +AW+K + P  FLA  +  +
Sbjct: 771 MSARGYEPEFIDRICQQIEGFGEYGFPESHAASFALLVYLSAWLKRYEPAAFLAGLLNSQ 830

Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVN 822
                   +  QDAR+  ++++PP V 
Sbjct: 831 PLGFYSPSQLVQDARRHGVKVLPPDVT 857


>gi|305665445|ref|YP_003861732.1| DNA polymerase III subunit alpha [Maribacter sp. HTCC2170]
 gi|88710200|gb|EAR02432.1| DNA polymerase III alpha subunit [Maribacter sp. HTCC2170]
          Length = 983

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 201/681 (29%), Positives = 336/681 (49%), Gaps = 57/681 (8%)

Query: 211 LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPE 269
           LV      F ++ D+ AH +L A+  + ++S+ D+      D  +     + + FS+   
Sbjct: 131 LVVQQPVTFRTKGDFNAHRLLRAIDKNMLLSKLDKTEEAKEDEKMFPIQNLAAAFSEYSF 190

Query: 270 ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            LENT ++   CS          P+ + K  +  ++E+E  L      GL  R   G   
Sbjct: 191 ILENTEKLMNACSIHFDFSKERQPQNL-KTYNKTKEEDETMLEGLCQKGLPYRYPNGG-- 247

Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                    QRL  EL +I  M F  YFLI  D + +A+K       GRGSGA S+ AY 
Sbjct: 248 -----DGIIQRLQKELKLIKGMGFVSYFLINWDIVSYAQKQGF-FYVGRGSGANSIVAYL 301

Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
           L ITD+DP+   L FERF+N  R + PDFDIDF    R ++ +Y+ +++ H  VA + T+
Sbjct: 302 LRITDVDPMELDLYFERFINLYRANPPDFDIDFSHRDRPKITQYIFDRFEH--VALLGTY 359

Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            + + K  +R++G+   +P S++D L                     R+  +RL + S  
Sbjct: 360 VTFKEKGVVRELGKVFGLPKSEIDFLS------------------GGRYDISRLDEVS-Q 400

Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            +++  + ++ +  + S HA GI+I +RPL      +   +     T F+M   E  GL 
Sbjct: 401 LVVKYGRLIKNMPNYLSIHAGGILISERPLHYFSATHLPPKG-FATTMFDMVIAEDVGLY 459

Query: 570 KFDFLGLKTLTLLQKSLDFLAQRG----VKVDLSLIP--FDDHETYHLLTTKGTLGIFQL 623
           KFD LG + L  +++++D L         K+D+  I    +D    +L+ T   +G F +
Sbjct: 460 KFDILGQRGLAKIKETMDILEHTRPDDFSKIDIHNINKFKEDPNVNNLIKTAQCMGCFYV 519

Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV----VYNNRKNGKEKIVSIHPLID 679
           ES  MR  L+ ++ D    ++A  S+ RPG   + +    +  +R  G++K    HP++ 
Sbjct: 520 ESPAMRMLLKKLEVDNYLGLVAASSIIRPGVSKSGMMREYILRHRNPGRDKEKG-HPVML 578

Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI--KEEMDKQKERFISGAS 737
            ++ ET GV++YQE V+++A   +G  L EADVLRR M  K   +EE  K +E+FI    
Sbjct: 579 DIMPETYGVMVYQEDVIKVAHHFAGLDLGEADVLRRGMSGKFRSREEFQKVREKFIENCR 638

Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
           K G    I   ++  +A FA Y F K H+A+YAV SYQT +++ +YP+E++ A +     
Sbjct: 639 KKGEDDKIIFEVWGQIASFAGYAFAKGHSASYAVESYQTLFLRAYYPLEYMVAVLN-NGG 697

Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-----YSLAAIKGVGTTTARH 852
              + + +  +AR     ++  ++++PCV+  +  N IY          ++ +    A  
Sbjct: 698 GFYRPEFYVHEAR-----MLGATIHSPCVNRSLNRNVIYGKGIFLGFGYLRELEHRVAER 752

Query: 853 IM-EASADKPFDSLEDFCSRV 872
           I+ +   +  + SLEDF  RV
Sbjct: 753 ILKDRKVNGAYGSLEDFLDRV 773


>gi|332170372|gb|AEE19627.1| DNA polymerase III, alpha subunit [Krokinobacter diaphorus 4H-3-7-5]
          Length = 1010

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 268/1064 (25%), Positives = 460/1064 (43%), Gaps = 191/1064 (17%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            ++L  HS +SL  G +S   +LD    +     A+TD NN    L F ++A    I+PII
Sbjct: 1    MYLNNHSYFSLRYGTISEEELLDLAIHEGCNHFALTDINNTSGCLNFVRRAKEKNIKPII 60

Query: 72   GCQLDIDMQDNLK-------MTNQG--------------KTPFPTVPSIVLLVSTAEGYQ 110
            G    +D ++N K       M NQG              KTPFP           A  +Q
Sbjct: 61   G----VDFRNNTKQCYVALAMNNQGFLEINNYLSKHLHNKTPFP---------DQAPHFQ 107

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             +I +     +++ GK +     +  + IG           +  I +  F + S + +K 
Sbjct: 108  NVIIIYPFENVMELGKTT----FTSNEYIGVR---------AKDIYKLKFSSLSSLTKKL 154

Query: 171  LLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++     F D+   N                    TH L L A + ++ LS         
Sbjct: 155  VILHTVSFRDKRDFN--------------------THRL-LRAIDTNVLLS--------- 184

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC--SFILQVH 288
               + H+   S  D         + +R E+  +F D P  +ENT  + + C   F     
Sbjct: 185  --TLPHTDQGSPND--------LMYSRKEIAQVFKDYPSLIENTNNLLQECKIDFNFSKD 234

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELN 346
             P       +    + K  E + +        + L +  +   Y   D   + RL  EL+
Sbjct: 235  KP------SQNLTTLLKSPEADYKKL------LELCEKGLKDRYEVVDNIIKGRLKKELD 282

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            +I R+ +  +FLI    I++A+  +     GRGSGA S+ AY L ITD+DP+   L FER
Sbjct: 283  LIKRLDYVAFFLINWKIIEYARSKDY-YYVGRGSGANSIVAYLLRITDVDPIELDLYFER 341

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY-GHERVAQIITFGSLQAKAALRDVGRAL 465
            F+N  R + PDFDIDF    R++V  Y+  ++ G+ +VA + ++ + +   A+R++G+  
Sbjct: 342  FMNLYRATPPDFDIDFSTWDREDVTDYIFKEFKGNHQVALLGSYVTFKHSGAVRELGKVF 401

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL-LEISQKLEGLYRH 524
             +P  ++D+L                   D R+    L D  + +L L+ +Q L G   +
Sbjct: 402  GLPKYEIDKLS------------------DGRYDPNSLDD--IKKLVLKYAQVLHGRPNY 441

Query: 525  ASTHAAGIVIGDRPL-----SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
             S HAAGI+I  +P+     + L P         P  QF+M   E  GL KFD LG + L
Sbjct: 442  TSIHAAGILISSKPIHYFSATNLPP------KGFPTVQFDMHIAEDVGLYKFDILGQRGL 495

Query: 580  TLLQKSLDFLAQRGVKVDLSLIP-----FDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
              ++ ++  +     +V L  I      F D     +++    +G F +ES  MR  L+ 
Sbjct: 496  GKIKDAVAIIKHNNPRVALPDIHNAKQFFTDDRINEMISQADCIGCFYVESPAMRMLLKK 555

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYN---NRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            +       ++A  S+ RPG   + ++       K+ K      HP++  ++ +T GV++Y
Sbjct: 556  LGVRDYLTLVAASSIIRPGVSKSGMMREYILRHKDPKRAEREGHPVLLRIMPDTYGVMVY 615

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKI--KEEMDKQKERFISGASKNGISKTIAVNI 749
            QE V+++A   +G  L EADVLRR M  K   +EE  + KE+F +     G S  +   +
Sbjct: 616  QEDVIKVAHHYAGLDLGEADVLRRGMSGKYRSREEFLQVKEKFKNNCLAKGESIAVVNEV 675

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +  +  FA Y F K H+A+YAV SYQ+ ++K ++P+E++ A++        + + +  +A
Sbjct: 676  WRQIESFAGYAFAKGHSASYAVESYQSLYLKCYFPLEYMVATIN-NGGGFYRTETYVHEA 734

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
            ++    + PP +NT  +   +    IY     ++         I+ A  D PF SL+DF 
Sbjct: 735  KKKGAIVHPPCINTSDIQTTIHGKDIYLGFQHLQTFEKKNIVLIINARIDGPFKSLDDFL 794

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             RV    ++   L+ L+           R++  +S+ + Q+   W    + N   +I  +
Sbjct: 795  ERV---PISLDQLDLLI-----------RVEAFRSIKDNQRSLLWEAHYKNNARPSI-DN 839

Query: 930  EKGTFSDKIT---LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            +K  F   IT   L +F + +    F+  + +         L +Y P +         ES
Sbjct: 840  QKELFKVSITSFKLPEFYIPDVEKAFDQIEIL--------SLSLYDPFI-------LLES 884

Query: 987  VATIR----------GNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            + TI+             + +   +V+     T  G+R+ + TF
Sbjct: 885  IPTIKILAKDLYLHLNKTVEIYGYLVTANNTGTSNGNRMSFGTF 928


>gi|217977255|ref|YP_002361402.1| DNA polymerase III, alpha subunit [Methylocella silvestris BL2]
 gi|217502631|gb|ACK50040.1| DNA polymerase III, alpha subunit [Methylocella silvestris BL2]
          Length = 1145

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 228/872 (26%), Positives = 395/872 (45%), Gaps = 81/872 (9%)

Query: 181  RLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHST 238
            RL++  +   G    R+ +  + L+     PL+A N+ +  + E     DVL A+ A  T
Sbjct: 188  RLWLAAKMTYGVSMRRDLASRIALSRKTNTPLIAVNDVIMHTPERRPLQDVLSAIRAGQT 247

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +           + ++K+ +EM  +F+  P+A+E T+       F L             
Sbjct: 248  LDRLGLALEANAERHMKSAAEMARLFAGAPQAMEETLRFLDGLDFSL------------- 294

Query: 299  ECDDIQKEEENELRNK-----------AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              D+++ +   ELR             A  G + R   G       A      +  EL +
Sbjct: 295  --DELRGDYPEELREGFETPQAALAFFAREGAKFRFPDGVPPSVETA------IAHELKL 346

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            + ++ ++ YFL V D +++A+   I +  GRGS A S   Y L +T+++P   +LLFERF
Sbjct: 347  VEQLDYAPYFLTVHDIVRFARTEKI-LCQGRGSAANSTLCYCLGVTEVNPAFHNLLFERF 405

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            ++PDR   PD D+DF  +RR++V++Y+  +YG  R A   +  + +A++A+R+VG+A  +
Sbjct: 406  ISPDRNEPPDIDVDFEHERREQVMQYIYARYGRARAALTASVITYRARSAIREVGKAFGL 465

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRF--REARLADPSVDRLLEISQKLEGLYRHA 525
                V  L   I    +  V     A  + F   EARLA     + L+++++L G  RH 
Sbjct: 466  SDDVVSALSATIWGGSSSSVE-AGEAQKAGFDPTEARLA-----QTLKLAEELIGFPRHL 519

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            S H  G VI    L ++VP+      D    +++   ++  G++K D L L  LT L+K 
Sbjct: 520  SQHTGGFVITRSRLDEVVPIMNAAMEDRTTIEWDKDDLDALGILKIDVLALGMLTCLRKG 579

Query: 586  LDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
             D + +  G ++ ++ +P +    Y +++   T+G+FQ+ES      L  ++P    D++
Sbjct: 580  FDLIREHYGEELTIATLPPEQGAVYEMISRADTIGVFQIESRAQMSMLPRLRPREFYDLV 639

Query: 645  ALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
              V++ RPGPI  D +  Y  R+ G E +      ++ +L +T GV ++QEQ M+IA + 
Sbjct: 640  IEVAIVRPGPIQGDMVHPYLRRRQGLEPVSYPSKQLEEVLGKTLGVPLFQEQAMKIAIVA 699

Query: 703  SGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            +G++ SEAD LRRAM   K    +   + + I G      S+  A   F+ +  F  YGF
Sbjct: 700  AGFTPSEADQLRRAMATFKHVGTIGAFRAKMIEGMVARDYSRDFAERCFKQIEGFGSYGF 759

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SHAA++A++ Y +AWMK  YP  F  A +  +        +  +DAR+  + +    V
Sbjct: 760  PESHAASFALLVYASAWMKCRYPDAFACALLNAQPMGFYAPAQILRDAREHGVGVEEVDV 819

Query: 822  N--------TPCVDFKVGDNR-------------IYYSLAAIKGVGTTTARHIMEASADK 860
            N        TP  + +    R             I      IKG     A  ++ A  D+
Sbjct: 820  NFSHWDSTLTPAAERRPPHPRHASMQGEIFATCGISLGFRQIKGFAEHDATQLV-AMRDR 878

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             +DS+ D   R     L+  V+E L  A A    G  R + L ++  +         NR 
Sbjct: 879  GYDSIRDLWLRAG---LSLAVMELLAGADAFRSLGLDRREALWAVRGL---------NRA 926

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
               +++   +  ++       K            + R L      HP+   +  L +  I
Sbjct: 927  GDKDDLPLLKDLSWRATEAEAKLPPMLLGEHVVEDYRRLSLSLKAHPVSFLRERLTQKRI 986

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
               ++      G+ I +A +V+ +Q+  T  G
Sbjct: 987  LRADDLKNQPAGSRITVAGLVLVRQRPGTASG 1018


>gi|194100685|ref|YP_002003434.1| gp76 [Mycobacterium phage Predator]
 gi|192758401|gb|ACF05173.1| gp76 [Mycobacterium phage Predator]
          Length = 1104

 Score =  281 bits (718), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 270/999 (27%), Positives = 437/999 (43%), Gaps = 140/999 (14%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV    HS++S  +G  S+   + ++AA    A+A+++  N+ S ++  ++   AGI+PI
Sbjct: 3   FVSFHTHSTFSYGDGFGSVEAHVQRVAALGMSAVALSEHGNVSSHVQLERECNKAGIKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--------- 121
            G +         K T Q KT       + +     EGY+ L  LV++ +L         
Sbjct: 63  FGIEAYFGPVSEEKRT-QSKT------HLTIFAMDEEGYRNLNRLVTQSWLDFYQYPTVS 115

Query: 122 -LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI-DRAFFFNSSQVAEKRLLT-FKKLF 178
             +  K S  + +            +L G   GP  D     +  Q A  R+L  F  +F
Sbjct: 116 WENLRKHSAGLAVFSGCADSLASCTLLGGKFLGPRRDPELDSSKRQKAVHRVLARFTDVF 175

Query: 179 GDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            DR ++  QR  G  R R   ++  ++A    +PL+AT +  +           L A   
Sbjct: 176 EDRFFLETQRFPGLPRTRAINAEFARIARDTGIPLIATADVHYPFPHQNIMQTALHAAHR 235

Query: 237 STVVSQKDRPRVTPDHYLKNRSEMVSIFSDL----------PEALENTVEIARRCSFILQ 286
              V+  D      D  L        I  DL           +A+ NT E+A+RC+  L 
Sbjct: 236 GGSVATVD-AEWEYDILLTYPESDEEIIKDLVGTGLSEDEAKQAVANTAELAKRCNVELP 294

Query: 287 VHAPILPRFIEKECD-----------DIQKEEENE------LRNKAVAGLEVRLAQ-GAI 328
              PI  RF   + D           +  KEE  +      + N+   G + R  Q   I
Sbjct: 295 KAKPI--RFPGVKIDKAMLCGPKAPSEGDKEEVRKFATQLYMMNEIKKGWKYRCKQRPEI 352

Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
           AK   A++Y +R+ +E++VI+   F  YFL+ +D + + K     VGP RGS AGS+  Y
Sbjct: 353 AK--RAKEYSRRISYEMSVISEKDFMDYFLVNSDLVSYTKDQGKGVGPARGSAAGSLVCY 410

Query: 389 ALTITDIDPLR---FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
            L IT+IDPL      ++FERF++  R  MPD D+DF  + R  +++   + YG + VA 
Sbjct: 411 LLRITEIDPLYPVFNKMIFERFIDKTREDMPDIDLDFDPEARPVIVQRAVDLYGQDHVAN 470

Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR--EARL 503
           +      +  +A+  + +A  +P +      K I +            DD+     E+  
Sbjct: 471 VGNHMGYRGVSAMNAMAKAHALPQNTF----KAIKDRIQDRTETDERVDDTILDVLESYG 526

Query: 504 ADPSVDRLLE-------ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR------DVR 550
            +P V +++E       ++  LEG  R    HAAG VIG  P+     +Y         R
Sbjct: 527 DNPDVAKVVEAHPNPVKLATWLEGNKRGLGVHAAGFVIGSEPIPDTCAIYSRESGSGRKR 586

Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY- 609
             + V  ++ +  E  GL+K DFLGL T+ +++++ + +      +   L P  D   Y 
Sbjct: 587 KTVTVIPYDKRDAEYLGLLKNDFLGLLTIGVIRRAAEMVGMTMEDMYTLLPPEGDLRDYD 646

Query: 610 ------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
                         +GIFQ E    R  L  + P     +  + +L RPGP        Y
Sbjct: 647 HSRPVIEGFLNDDLVGIFQFEGGTTRGVLRDVVPTEFRHLADINALSRPGPKYGGQTERY 706

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              K G+E++ SIHPL D  ++ T G I+YQEQ+M I + L+G+ + +   +R+ +GKK+
Sbjct: 707 IAVKAGEEELESIHPLFDQHVEWTYGQIVYQEQIMFILRDLAGFPIEKVLKVRKIIGKKL 766

Query: 722 KE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            E +     E F +G + NG+ +  A  ++  +   A Y FN SH+ +Y+ I++Q+ W+K
Sbjct: 767 GEHQFAALWEDFKNGCATNGVDENTARRVWGGITSAAGYAFNTSHSYSYSWIAWQSMWLK 826

Query: 781 THYPVEFLAASMTLEMDNVEKIKK---FCQDARQFNIQIMP--PSVN---------TPCV 826
            HYP  F A+S++   D  E   +     QDA    I+++P  PS +          P V
Sbjct: 827 VHYPAAFFASSLSFNGDGKEDKPRRTALIQDAIAHEIKVLPIDPSRSGENWDIERQMPGV 886

Query: 827 DF-----------KVGD-----------------NRIYY-----SLAAIKGVG-TTTARH 852
           D            KVG+                 N+ Y       L A+KGVG +T A+ 
Sbjct: 887 DAGAIRPGFIQIPKVGEATASDIVAWRDDLDQQHNKAYGLIKWDDLRAVKGVGPSTVAKM 946

Query: 853 IMEASADKPF------DSLEDFCSRVDSKKLNRRVLESL 885
           +M A +  PF      D L  F  +++S   +   L S+
Sbjct: 947 MMFAESPDPFEINRVHDQLAAFRKQMESGAFDNSPLPSI 985


>gi|323525477|ref|YP_004227630.1| DNA polymerase III subunit alpha [Burkholderia sp. CCGE1001]
 gi|323382479|gb|ADX54570.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1001]
          Length = 1191

 Score =  281 bits (718), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 195/658 (29%), Positives = 324/658 (49%), Gaps = 38/658 (5%)

Query: 179 GDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
           G R ++ L+    G D  +   +  ++    LPLVA    L  +       D + A+  +
Sbjct: 224 GTRAWIALELWQTGSDDLQIDALRMISQASGLPLVAAGGVLMHTRSRKPLQDTMTAIGLN 283

Query: 238 TVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
           T +           + +L+ R  +  ++    + LE T++IA RC F L       P   
Sbjct: 284 TPLPACGHALEANAERHLRTRVRLSKLYPR--DTLEETLKIAARCRFSLDELKYEYP--- 338

Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            +E     +   + LR   +AG   R   G   K         +++ EL++IA +K+  Y
Sbjct: 339 -EELVPAGESPSSYLRKLVMAGAAERWPNGMDLKRI------DQIEKELHLIADLKYEKY 391

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
           FL V D +++A+  NI +  GRGS A S+  Y L +T+IDP+  ++L ERF++  R   P
Sbjct: 392 FLTVHDIVRFARSKNI-LCQGRGSAANSIVCYCLHVTEIDPVHMNMLIERFISRARNEPP 450

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           D D+DF   RR+EVI+Y+  KYG  R A   +  +   ++AL+DVG+AL +  S ++R+ 
Sbjct: 451 DIDVDFEHQRREEVIQYIYAKYGRHRAALTASLITYHVRSALKDVGKALGLEASLIERIS 510

Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVD-------RLLEISQKLEGLYRHASTHA 529
           K            Q   D        L +   D        L+ ++++L    RH S H 
Sbjct: 511 K-----------SQQWWDGPEAVAGYLKEAGFDANSHITKNLIRLTKELRLFPRHLSQHV 559

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G VI    LS+LVP+      D  V +++   I+   L+K D L L  L+ ++++L+F+
Sbjct: 560 GGFVIARDKLSRLVPIENATMKDRSVIEWDKDDIDALKLLKVDVLALGMLSAIRRALEFV 619

Query: 590 A-QRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
           A +RG  +  +  IP +D   Y +     T+G+FQ+ES   +  L  ++P+   D++  V
Sbjct: 620 ALRRGFPRFRVQDIPREDRAVYEMCGHADTVGVFQIESRAQQSMLPRLKPNKYYDLVIEV 679

Query: 648 SLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
           ++ RPGPI   +V  Y  RK G E I      + P+L+ T GV I+QEQVM +A + + Y
Sbjct: 680 AIVRPGPIQGGMVHPYLRRKQGLEPIDYAKDELRPVLERTLGVPIFQEQVMHLAMVAAKY 739

Query: 706 SLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
           +  +AD LRRAM   +    + K ++      S  G        I + +  F +YGF +S
Sbjct: 740 TGEQADQLRRAMAAWRRTGNLAKYQKDLSDRMSARGYEPEFIERICQQIEGFGEYGFPES 799

Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           HAA++A++ Y +AW+K + P  FLA  +  +        +  QDA++  ++++PP V 
Sbjct: 800 HAASFALLVYLSAWLKRYEPAAFLAGLLNSQPLGFYSPSQLVQDAKRHGVKVLPPDVT 857


>gi|256422251|ref|YP_003122904.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
 gi|256037159|gb|ACU60703.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
          Length = 980

 Score =  281 bits (718), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 230/887 (25%), Positives = 405/887 (45%), Gaps = 113/887 (12%)

Query: 43  AIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            +A+T+ NN     +F      AGI+P+ G  ++I  +D L                +LL
Sbjct: 32  TMALTNINNTSDIWDFVSACKRAGIKPVAG--VEIRNEDTL--------------CYLLL 75

Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
               EG+ ++   +S  +L+ +     R+      E+G +  ++            + FN
Sbjct: 76  SRNNEGFFQINRFLS-THLIAKAPFPDRV------ELGADVFVI------------YPFN 116

Query: 163 SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
              +  + LLT  +  G +    + +  G D  +              L+  +   F  +
Sbjct: 117 KEWLQSEPLLTVNEYMGVQT-TEVNKLYGVDMQQWGS----------RLLMRHPVTFQDK 165

Query: 223 EDYEAHDVLMAVAHSTVVS-QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
             Y  H +L A+  + ++S Q+D  +          + ++  F   P+ + NT  +  +C
Sbjct: 166 VHYNVHRLLRAIDKNIILSKQEDTHKAGEHETFMPPATLLLAFEAYPQIIINTFLLMEKC 225

Query: 282 SFILQVHAPILPRFIEKECDDIQKEEENELRNK-AVAGLEVRLAQGAIAKGYHAQDYRQR 340
           S  +            K+     KE++ +L  K A  GL  R  +            R+R
Sbjct: 226 SLDMDYEEDK-----NKKHASASKEDDRQLLEKLATDGLLYRYGKTNTVA-------RER 273

Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
           +  EL +I  + F+ YFLI  + +Q+A+        GRGSGA S+ AY + ITD+DP+  
Sbjct: 274 VLKELKIINDLNFNAYFLITWEILQYARSRGF-FHVGRGSGANSIVAYCMQITDVDPIEL 332

Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            L FERFLNP R S PDFDIDF    RD++I +V  KYG E VA +  + + Q KA +R+
Sbjct: 333 DLYFERFLNPYRTSPPDFDIDFSWVDRDDIIDFVFKKYGKEHVALLGMYTTFQYKATVRE 392

Query: 461 VGRALQMPYSQVDRLC--KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
           +G+   +P +++D L   +L  +D  H                        ++L  S  +
Sbjct: 393 LGKVYGLPKTEIDLLAEGRLQSDDKVHA-----------------------QILRYSDLI 429

Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDF 573
           +    H S H  G++I + P+           +DLP      TQ +M   E   L KFD 
Sbjct: 430 KDFPNHLSIHPGGMLISENPIHYYTA------TDLPPKGFYTTQIDMFVAENISLFKFDI 483

Query: 574 LGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF--DDHETYHLLTTKGTLGIFQLESSGMRQ 630
           L  + L  ++ ++D + + RG+ +D+  +     D      + +  T+G F +ES  MRQ
Sbjct: 484 LSQRGLGHIKDTVDLVRKTRGIAIDIHDVELFKQDKRVAQQIRSADTIGCFYIESPSMRQ 543

Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            L+ ++      ++A  S+ RPG   + ++  Y  R +  +K   +HP +  +L+ET GV
Sbjct: 544 LLKKLRCSDYLTLVAASSIIRPGVGQSGMMQEYIYRYHNPDKFEYLHPKMKELLQETYGV 603

Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK--EEMDKQKERFISGASKNGISKTIA 746
           ++YQE V+++A    G  ++E+D+LRRAM  K +  ++M + +E+F       G    I+
Sbjct: 604 MVYQEDVIKVAHHFGGLDMAESDILRRAMSGKYRGTKQMQRLEEQFFLNCKARGYDPGIS 663

Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
             ++  ++ FA Y F+K+H+A++AV SYQ+ ++KT+YPVEF+ A +            + 
Sbjct: 664 REVWRQISSFAGYSFSKAHSASFAVESYQSLYLKTYYPVEFMVAVIN-NFGGFYNRALYF 722

Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSL 865
           Q   +    +  P +N       + ++ +Y     IK +       I+E    +  +  L
Sbjct: 723 QQLIKHGATVYNPCINNSDYLTSIKNDIVYVGFIHIKDLERALMEKILEERDRNGAYLHL 782

Query: 866 EDFCSR--VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
           +DF  R  V  ++LN     +L+   AL   G ++ +LL   + +QK
Sbjct: 783 QDFIERTQVPPEQLN-----TLIKVNALRFTGKTKGELLWEANTLQK 824


>gi|91782661|ref|YP_557867.1| DNA polymerase III, alpha subunit [Burkholderia xenovorans LB400]
 gi|91686615|gb|ABE29815.1| DNA polymerase III, alpha subunit [Burkholderia xenovorans LB400]
          Length = 1195

 Score =  280 bits (716), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 190/627 (30%), Positives = 314/627 (50%), Gaps = 37/627 (5%)

Query: 209 LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDL 267
           LPLVA    L  +       D + A+   T +S          + +++ R  +  ++   
Sbjct: 259 LPLVAAGGVLMHARSRKPLQDTMTAIGLVTPLSACGHALEANAERHMRTRVRLGKLYPR- 317

Query: 268 PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
            + LE T+ IA  C F L       P    +E     +   + LR   +AG   R  +G 
Sbjct: 318 -DTLEETLRIAALCRFSLDELKYEYP----EELVPAGESPSSYLRKLVMAGAMERWPEGM 372

Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
             K         +++ EL +IA +K+  YFL V D + +A+  NI +  GRGS A S+  
Sbjct: 373 DLKRI------GQIEKELALIADLKYEKYFLTVHDIVSFARSRNI-LCQGRGSAANSIVC 425

Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
           Y L +T+IDP++ ++L ERF++  R   PD D+DF   RR+EVI+Y+  KYG  R A   
Sbjct: 426 YCLHVTEIDPVQMNMLIERFISRARNEPPDIDVDFEHQRREEVIQYIYTKYGRHRAALTA 485

Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
           +  +  A++AL+DVG+AL +  S ++R+ K            Q   D +      LA+  
Sbjct: 486 SLITYHARSALKDVGKALGLEASLIERISK-----------SQQWWDGTDAVAGYLAEAG 534

Query: 508 VD-------RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
            D        L+ ++++L    RH S H  G VI    LS+LVP+      D  V +++ 
Sbjct: 535 FDANSHITQNLIRLTRELRSFPRHLSQHVGGFVIAKDKLSRLVPIENATMKDRSVIEWDK 594

Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV-KVDLSLIPFDDHETYHLLTTKGTL 618
             I+   L+K D L L  L+ ++++L+F+A +RG  +  +  IP +D   Y +     T+
Sbjct: 595 DDIDALKLLKVDVLALGMLSAIRRALEFVALRRGFPQFRVQDIPREDRAVYEMCGHADTI 654

Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP 676
           G+FQ+ES   +  L  ++P+   D++  V++ RPGPI   +V  Y  RK G E +     
Sbjct: 655 GVFQIESRAQQSMLPRLKPNKYYDLVIEVAIVRPGPIQGGMVHPYLRRKQGLEPVDYAKD 714

Query: 677 LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISG 735
            + P+L+ T GV I+QEQVM +A + + Y+  +AD LRRAM   +    + K ++     
Sbjct: 715 ELRPVLERTLGVPIFQEQVMHLAMVAAEYTGEQADQLRRAMAAWRRSGNLAKYQKDLNER 774

Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
             + G  +     I + +  F +YGF +SHAA++A++ Y +AW+K + P  FLA  +  +
Sbjct: 775 MLRRGYEQAFIDRICKQIEGFGEYGFPESHAASFALLVYLSAWLKRYEPAAFLAGLLNSQ 834

Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVN 822
                   +  QDA++  ++I+PP V 
Sbjct: 835 PLGFYSPSQLVQDAKRHGVKILPPDVT 861


>gi|296283965|ref|ZP_06861963.1| DNA polymerase III alpha chain [Citromicrobium bathyomarinum JL354]
          Length = 1190

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 228/868 (26%), Positives = 389/868 (44%), Gaps = 88/868 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV L + S +S L G+    +++         A+ I D N +   +    +A    ++P+
Sbjct: 28  FVELGLVSCFSFLRGSSDAVDLVTTARMLGYDALGIADANTMAGVVRIHTEAKTLKLRPV 87

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE--GYQRLIELVS--RMYLLDQGK 126
           IGC+++                  TV  +  L    +   Y  L  L+S  RM  L    
Sbjct: 88  IGCRIE------------------TVEGLAFLAYPKDRAAYGCLCRLISQGRMQTLSGKW 129

Query: 127 QSVRIC---LSWLQEIGTE-GLIMLTGGS-------SGPIDRAFFFNSSQVAEKRLLTFK 175
           Q   +C   L+ L +   +  LI+L           + P +   F + S   +K  ++  
Sbjct: 130 QEKGVCEIDLAMLADHAEDVQLILLPPDDLDVRFTIAVPSNVIPFRHPSSELQKGSVSPD 189

Query: 176 KLFGD----------RLYVNLQ------RH-------RGYDRYRESQVVQLAYTHELPLV 212
           ++ G+          RL  +L       RH       RG D  R  ++  +A  H L L+
Sbjct: 190 QVRGNDKVELTAPFPRLLAHLTAQLPTLRHLAAAYLYRGDDIARIDRLDAMAREHGLSLL 249

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEAL 271
           ATN+  + + E    +DV+ A+ H T V           + +LK   EM+ +F+  P A+
Sbjct: 250 ATNDVHYHAAERRPLNDVMTAIRHKTTVEAAGHLLHANAERHLKLPEEMIRLFARWPHAI 309

Query: 272 ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
             + +IA  C+F L+      P+    +    Q+     L  +   G   R +    AK 
Sbjct: 310 MASRDIADACTFSLEDLKYEYPKRAYPDGMTPQQY----LEQQTWEGANWRYSNVIPAK- 364

Query: 332 YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV-GPGRGSGAGSVTAYAL 390
                 +  L++EL +I ++  + YFL + + + +A+    P+   GRGS A S   + L
Sbjct: 365 -----VKTTLEYELELIGKLDLAPYFLTIKEIVDFARSQTPPILCQGRGSAANSAVCFCL 419

Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
            IT +DP    LLF+RFL+ +R   PD D+DF  +RR+EVI+++  +YG +R     T  
Sbjct: 420 GITSVDPAEHQLLFDRFLSEERSEPPDIDVDFEHERREEVIQHIYKEYGRDRAGLCATVI 479

Query: 451 SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
             + + A+R+VG+A+ +       L + +       +    +A+        + DP + R
Sbjct: 480 HYRPRMAIREVGKAMGLSEDVTASLARTVWGGWGREIGEDHVAETG----MDITDPHLRR 535

Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
           +L ++ ++ G+ RH S H  G ++ D  L++ VP+      D    +++   I+  G+ K
Sbjct: 536 VLTLTSQMIGMPRHLSQHVGGFILTDGLLTETVPIGNGAMPDRSFIEWDKDDIDDLGIFK 595

Query: 571 FDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
            D L L  LT ++K LD L     + + L+ IP +D   Y +L    +LG+FQ+ES    
Sbjct: 596 VDVLALGMLTCIRKGLDLLEDHYERPLTLATIPQEDPAVYDMLCKGDSLGVFQVESRAQM 655

Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN------GKEKIVSIHPL------ 677
             L  +QP    D++  V++ RPGPI   +V+   K       GK       P       
Sbjct: 656 NMLPRLQPRQFYDLVVQVAIVRPGPIQGDMVHPYLKQRRLARAGKTDFQLPAPAPEHGPP 715

Query: 678 --IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
             +  +L  T GV I+QEQ M+IA   + +S +EA+ LRRAM       M    E  + G
Sbjct: 716 DELSSILGRTFGVPIFQEQAMKIAIDAAKFSPAEANRLRRAMATFRSRGMVHAHEEMMVG 775

Query: 736 AS-KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
              + G     +   F+ +  F +YGF +SHAA++A + Y ++W+K HYP  F  A +  
Sbjct: 776 RMIERGYDPDFSQRCFDQIKGFGEYGFPESHAASFAHLVYVSSWLKCHYPAAFACALLNS 835

Query: 795 EMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           +        +  +DA +  + ++P  VN
Sbjct: 836 QPMGFYAPAQIVRDAAEHGVAVLPADVN 863


>gi|110677739|ref|YP_680746.1| DNA polymerase III, alpha subunit [Roseobacter denitrificans OCh
           114]
 gi|109453855|gb|ABG30060.1| DNA polymerase III, alpha subunit [Roseobacter denitrificans OCh
           114]
          Length = 991

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 247/936 (26%), Positives = 416/936 (44%), Gaps = 102/936 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE-FSQ--------- 60
           F  L + S++S L+GA      + + AA    AIAI D N +   +  ++Q         
Sbjct: 2   FAELNITSNFSFLKGASHPEEYMSRAAALGIEAIAIADENTVAGIVRAYAQARDIARQVR 61

Query: 61  -----KACAAGIQPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
                +A    I P +   L +    +    ++    +  F     I  L     G+  L
Sbjct: 62  ERQAWEAANDQIGPALPAGLRVAPATLYATPRLIPAARLVFADACDITALPENRAGWGAL 121

Query: 113 IELVS-------------RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             L+S             R   L +G   +++ L W Q    +G+    GG         
Sbjct: 122 CRLLSTGRQRAEKGACDLRQQDLLEGGCGLQLIL-WPQ---AQGVPCGAGG--------- 168

Query: 160 FFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSL 218
                 V   R LT +  FG ++++ L  ++ G D  R + + + A    LP VA+   +
Sbjct: 169 -----WVQTARQLTHR--FGGKIHIGLFPQYDGRDPQRFADLTEQARRLGLPTVASAAPV 221

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI 277
                  +  DV+ A+     V    R  +   +  L++ +EM  +F     A++    +
Sbjct: 222 MHHGARRKLADVVTAIRAGCRVDDLGRDALPNSEARLRSEAEMRRLFKGFDSAVDRAHTL 281

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENEL-RNKAVAGLEVRLAQGAIAKGY--HA 334
           A+   F L               D+++ E  +E+  N+  +G   RLA   +A  Y   A
Sbjct: 282 AQSLQFSL---------------DELRYEYPSEIAENETPSGRLRRLAYEGLAWRYPAGA 326

Query: 335 QDYRQRL-DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
            D   RL + EL +I ++K+  YFL V D + +A+  +I +  GRGS A SV  Y L +T
Sbjct: 327 SDKVHRLLEHELTLIGKLKYEPYFLTVRDIVAFARSRDI-LCQGRGSAANSVVCYCLGVT 385

Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            + P   +++FERF++  R   PD D+DF  +RR+EVI+++  +YG  R     T    +
Sbjct: 386 SVSPEIGTMVFERFVSEARNEPPDIDVDFEHERREEVIQHIYERYGRHRAGLCATVVHYR 445

Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD---- 509
            K A+R+VGRA+ +    +  L             L            R+A+  +D    
Sbjct: 446 VKRAIREVGRAMGLSEDTISALSS----------QLWGFFSTKGIEAERMAEIGLDANDR 495

Query: 510 ---RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
              + L +  ++ G  RH S H  G VI +  L +LVP+         V  ++   IE  
Sbjct: 496 RLQQTLALVHEINGFPRHLSQHVGGFVITEGRLDELVPIENATMEGRTVICWDKDDIEAL 555

Query: 567 GLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
           G++K D L L  LT ++K+ D +     V   L+ +P +D   Y +L    ++G+FQ+ES
Sbjct: 556 GILKVDVLSLGMLTCIRKAFDLMQMHHNVSHTLASLPPEDPAVYDMLCRADSIGVFQVES 615

Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
                 L  M+P C  D++  V++ RPGPI  D +  Y  R+NG+E++      +  +L 
Sbjct: 616 RAQMNFLPRMRPRCFYDLVIEVAIIRPGPIQGDMVHPYIRRRNGEEEVSFPSDELGEVLG 675

Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGIS 742
           +T GV ++QEQ MQIA + +G++  +AD LRR++   K    + + K  F+ G  + G  
Sbjct: 676 KTLGVPLFQEQAMQIAIVGAGFTPDQADRLRRSLATFKKHGNVSEFKNLFLRGMKRKGYD 735

Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              A   F  +  F  YGF +SHAA++A++ Y ++W+K H+P  F  A +  +       
Sbjct: 736 DDFAERCFSQIEGFGSYGFPESHAASFALLVYASSWIKCHHPGIFACALLNSQPMGFYAP 795

Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEAS 857
            +  +DAR+  + + P  +N    D  +     G   +      IKG+    A  +  A 
Sbjct: 796 AQIVRDAREHGVDVRPICINASFWDNVMEPDGRGGLALRLGFRQIKGISEEDATWLTAAR 855

Query: 858 ADKPFDSLEDFCSRVDSKK-LNRRVLESLVFAGALD 892
            +  + S+ D   R   +  +  R+ E+ VFA ALD
Sbjct: 856 GNG-YRSVRDVWRRAGLQPVMIERLAEADVFA-ALD 889


>gi|92118176|ref|YP_577905.1| error-prone DNA polymerase [Nitrobacter hamburgensis X14]
 gi|91801070|gb|ABE63445.1| error-prone DNA polymerase, DnaE-like protein [Nitrobacter
           hamburgensis X14]
          Length = 1164

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 228/828 (27%), Positives = 376/828 (45%), Gaps = 51/828 (6%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           PS+  + + +++S L GA      + + +  + P I I D N L   +    +A A    
Sbjct: 8   PSYAEIGIATNFSFLHGASHPQEYVHQASELRLPIIGIADRNTLAGVV----RAYAELGN 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           P +  +  + +   L   +         P I++     + Y RL  L++R     + K  
Sbjct: 64  PELRSKPRLLIGSRLVFID-------GTPDILVYPRDRDAYGRLCRLLTRGKRAAE-KGE 115

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             + L  L E     L++LT      +   F   ++     RL    +  G  L  +L  
Sbjct: 116 CHLGLDDLLEFSEGQLLVLT------LPHRFDTTTALKVLDRLRQ-SRAAGVWLAASLL- 167

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
           +RG DR R  ++ ++A    +PL+ATN  L+         DVL  +     V    R   
Sbjct: 168 YRGDDRRRLLRLRRIATAARVPLLATNEVLYHHPARRPLQDVLTCIREKATVHAIGRKLE 227

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              + YLK   EM  +F D+PEA+  TV +A R +F L       P          Q+  
Sbjct: 228 ANAERYLKPTDEMARLFRDIPEAIAETVTLASRIAFTLDQLKYQYPDEPVPPGKTAQRRL 287

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
           E+     A     VR+              R+ L  EL +I ++ ++ YFL V D + WA
Sbjct: 288 EDLTWAGAHKYFPVRIPPKT----------RKVLHKELRLIRQLNYAHYFLTVHDIVHWA 337

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           +  NI +  GRGS A S   Y L IT ++P    LLFERF++ +R+  PD D+DF   RR
Sbjct: 338 RSRNI-LCQGRGSAANSAVCYVLGITAVNPAETDLLFERFISKERLEPPDIDVDFEHSRR 396

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           +EV++YV  +YG  R A I T    + ++A+RDVG+AL +       L   +       V
Sbjct: 397 EEVMQYVYRRYGRHRAAIIATVIHYRPRSAIRDVGKALGLTEDVTAALADTVWGSWGDGV 456

Query: 488 SLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
           S      D + R+A     +P + R + ++ +L G  RH S H  G V+    L   VP+
Sbjct: 457 S------DMQVRQAGFDPRNPMLRRAVALATELIGFPRHLSQHVGGYVLTQDRLDTYVPI 510

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
                 D    +++   ++   ++K D L L  LT ++K  D +A+ +G + +L+ +P +
Sbjct: 511 GNAAMDDRTFIEWDKDDVDALRMMKVDVLALGMLTCIRKCFDLIARHKGKRWELATVPRE 570

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY--- 661
             E Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+   
Sbjct: 571 QREVYDMLCKGESLGVFQVESRAQMNMLPRLKPRTFYDLVIEVAIVRPGPIQGDMVHPYL 630

Query: 662 NNRKNGKEKIVSIHPL------IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             R    E I   +P       +  +L +T GV ++QEQ M+IA   + ++  EA+ LRR
Sbjct: 631 KRRAMKPEDIDYPYPKGGDRNELRNVLHKTLGVPLFQEQAMRIAIEAAKFTSQEANGLRR 690

Query: 716 AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           AM   +    +   +E+ ++     G     A N FE +  F  YGF +SHAA++A + Y
Sbjct: 691 AMATFRNVGTIGTFQEKMVNSMIARGYDPVFAKNCFEQIKGFGSYGFPESHAASFAQLVY 750

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            ++W+K  +P  F    +  +        +   DAR+  + + P  V+
Sbjct: 751 VSSWLKRFHPDAFCCGLLNSQPMGFYAPAQIVGDARKNGVAVRPIDVS 798


>gi|76798876|ref|ZP_00781084.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae 18RS21]
 gi|76585772|gb|EAO62322.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae 18RS21]
          Length = 620

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 172/472 (36%), Positives = 261/472 (55%), Gaps = 26/472 (5%)

Query: 498 FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
           FR+   +     +  +I++++EG  R  S HAAG+V+ D  L+  +P+      D+ +TQ
Sbjct: 4   FRQIIDSKIEYQKAYDIAKRIEGNPRQTSIHAAGVVMSDDLLTDHIPLKNG--EDMMITQ 61

Query: 558 FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKG 616
           ++   +E  GL+K DFLGL+ LT +QK  + + +  G+ + L  I  +D ET  L     
Sbjct: 62  YDASSVEDNGLLKMDFLGLRNLTFVQKMKEKVDKDYGISIQLETIDLEDKETLKLFAAGQ 121

Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
           T GIFQ E SG    L  ++P+C ED++A  SL RPG  D    + NR+ GKEKI  + P
Sbjct: 122 TKGIFQFEQSGAINLLRRIRPECFEDVVATTSLNRPGASDYTENFINRRFGKEKIDLVDP 181

Query: 677 LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
           +I P+L+ T G+++YQEQVMQIAQ  +G++L ++D+LRRAM KK  +EM K  + F+ GA
Sbjct: 182 VIAPILQPTYGIMLYQEQVMQIAQTYAGFTLGKSDLLRRAMSKKNSKEMQKMSQSFLEGA 241

Query: 737 SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
              G  +  A  IFE +AKFA YGFN+SHA AY+ +++Q A+ K HY   F    + +  
Sbjct: 242 VSKGHRQEDARLIFERMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYSDVFY--DIMINY 299

Query: 797 DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
            N +    +  DA  F   I  PS+NT     ++   +IY  L  IKGV    A  I   
Sbjct: 300 SNSD----YLIDAIDFGFVIEKPSINTISYRDRIYKKKIYLGLKNIKGVPNDLAYWI--- 352

Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
           S ++PF S+EDF  R+  +      +  L+  GA D F  +R ++  +LD++  +     
Sbjct: 353 SKNQPFQSIEDFLMRLPQQFQKSGFISPLIAIGAFDEFDNNRRKITSNLDSLFTFV---- 408

Query: 917 KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
               N+  ++FA    T    + +E FS   +S ++E EQ +LG   S HPL
Sbjct: 409 ----NELGSLFA---DTSYHWLEVEDFS---NSEKYEMEQDILGVGISPHPL 450


>gi|94313057|ref|YP_586266.1| DNA polymerase III subunit alpha [Cupriavidus metallidurans CH34]
 gi|93356909|gb|ABF10997.1| DNA polymerase III alpha subunit [Cupriavidus metallidurans CH34]
          Length = 1153

 Score =  278 bits (710), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 236/871 (27%), Positives = 412/871 (47%), Gaps = 76/871 (8%)

Query: 175  KKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +  FGDR ++ ++  +G+ +    +++ Q++    +PLVA               DVL A
Sbjct: 255  RATFGDRAWMAMELLQGHAEAMHRARLQQVSAETGVPLVAAGAVNMHVRSRKPLADVLTA 314

Query: 234  VAHSTVVSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
            +     +S   R  + P  + +L+ R  +  ++    EAL  T+++A +C F L +   +
Sbjct: 315  IRIGQPLSACGRA-LAPNAEAHLRMRQVLSRLYPR--EALAQTLKLADQCRFSLDM---L 368

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
               + E+   D  +     LR +   G+  R   G       A +++++L  EL +I   
Sbjct: 369  RYEYPEELVPD-GETPITYLRKEVERGITERFPHGM------APEWKKQLKEELELIEEK 421

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             +  +FL V D +++A++  I +  GRGS A S+  Y L IT++ P + +LLF RFL+ +
Sbjct: 422  HYEPFFLTVHDIVRFARQEGI-LCQGRGSAANSLVCYCLHITEVSPEQANLLFGRFLSRE 480

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+DF   RR+EVI+Y+  KYG  R A   +  + ++++ALRDVGRAL +    
Sbjct: 481  RDEPPDIDVDFEHQRREEVIQYIYGKYGRHRAALAASLITYRSRSALRDVGRALGIDPGV 540

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLA----DP---SVDRLLEISQKLEGLYRH 524
            V+++ K            QA  D       R++    DP   +V +   ++++L G  RH
Sbjct: 541  VEQVVK-----------GQAWWDGGAAFIDRISRYGLDPDSITVRQWASLTEQLRGFPRH 589

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             S H  G VI    LS+LVP+      +  V Q++   +E  GL+K D L L  LT +++
Sbjct: 590  LSQHVGGFVIARDKLSRLVPIENAAMENRSVIQWDKDDLESLGLLKVDVLALGMLTAIRR 649

Query: 585  SLDFLA-----QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            +L  +      + G+   +  +P  D +TY ++    T+G+FQ+ES   +  L  +QP  
Sbjct: 650  ALTMIPNPDPERAGLPTRMEDLPDGDVKTYDMICKADTIGVFQIESRAQQSMLPRLQPRE 709

Query: 640  IEDIIALVSLYRPGPIDNIVV--YNNRKNG----KEKIVSIHPLIDPMLKETQGVIIYQE 693
              D++  V++ RPGPI   +V  Y  R+      ++       +I  +L  T GV I+QE
Sbjct: 710  YYDLVVEVAIVRPGPIQGGMVHPYLKRREAFRLTRKLPTYFDDVIRRVLGRTLGVPIFQE 769

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            QVMQ+A   +G++  +AD LRR+M   + + ++ K ++  +   +  G  ++ A+ I + 
Sbjct: 770  QVMQLAIEAAGFTPGQADQLRRSMAAWRRRGDLKKHQDALVRALTGRGYPESFALAICKQ 829

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  F +YGF +SHAA++A + Y +AW+K HYP  FL A +  +        +  QDAR+ 
Sbjct: 830  IEGFGEYGFPESHAASFAKLVYVSAWIKCHYPEAFLCALLNSQPMGFYSPSQLVQDARRH 889

Query: 813  NIQIMPPSVNTPCVDFKVGDNR-------IYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +   P  V     +  +   R       +   +  +KG+    A  I  A   +PFDS+
Sbjct: 890  GVTSQPVDVTISNWESTLEPRREGQNFRDVRLGMNRVKGMREAAALRIEAARVARPFDSV 949

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT--NKH 923
            ED   R     L+R  +++L  A AL      R Q           A+W  +       H
Sbjct: 950  EDLARRA---SLDRHDIDALAAADALVSLAGHRRQ-----------ARWHARGAAVQTAH 995

Query: 924  ENIFAHEKGTFSDKITLEKFSV-ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
             ++  H+       + L +  + E+ +  + +    LG     HPL + +  LR +    
Sbjct: 996  RDLL-HDAPPQEHALQLPEPKLGEDVAADYAS----LGLSLKCHPLTLLRHRLRALKFAT 1050

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
              +      G  +R   +V  +Q+  T  G+
Sbjct: 1051 ARQLANCANGRRVRACGIVTVRQRPSTASGT 1081


>gi|153005061|ref|YP_001379386.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. Fw109-5]
 gi|152028634|gb|ABS26402.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 1197

 Score =  277 bits (709), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 211/713 (29%), Positives = 342/713 (47%), Gaps = 56/713 (7%)

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
            G   +D  ++L  EL ++ ++ ++ YFL V D +++A+   I +  GRGS A S   YAL
Sbjct: 438  GEPPEDVARQLARELELVEQLGYASYFLTVWDVVRFARSRGI-LCQGRGSAANSAVCYAL 496

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             IT IDP+R  LLFERF++ +R   PD DIDF  +RR+EVI+YV  +YG +R   +    
Sbjct: 497  GITAIDPVRMGLLFERFISAERGEPPDIDIDFEHERREEVIQYVYERYGRDRAGMVCEVI 556

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DPAHPVSLQAIADDSRFREARLADPSVD 509
            + + K+ALRDVG+AL +   QVDRL KL+   +    V  + +A      +A L   + D
Sbjct: 557  TYRGKSALRDVGKALGLSLPQVDRLAKLVGMYEDLSEVGPELLA------QAGLDVEASD 610

Query: 510  RL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
            R+   L+++++L+G  RH S H  G VI  RPL + VP+         + Q++   +   
Sbjct: 611  RVRMTLDLARELQGFPRHLSIHVGGFVITRRPLCETVPIEPAAMPGRTIVQWDKDDLADL 670

Query: 567  GLIKFDFLGLKTLTLL------------QKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT 614
             L+K D LGL  LT L              +L   A       L+ IP +D   Y +L  
Sbjct: 671  DLLKVDLLGLGMLTALSRALALLAAHRPAPALPTAAGLAHPDSLATIPPEDPAVYDMLCK 730

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIV 672
              ++G+FQ+ES         ++P    D++  V + RPGPI   +V  Y  R++GKE++ 
Sbjct: 731  ADSIGVFQIESRAQMSLAPRLKPRNFYDLVISVGIVRPGPIQGGMVHPYLRRRDGKEQVR 790

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKER 731
              +P ++P+L +T GV ++QEQ+M++A + +G++  EAD LRR M  ++  E++   K R
Sbjct: 791  YPYPPLEPVLAKTLGVPLFQEQIMRLAVVAAGFTPGEADELRRLMTHRRSHEKLAAMKAR 850

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
             ++G ++ GIS   A  IF  L  FA YGF +SH+A++A++ Y +AW++ ++P  F  A 
Sbjct: 851  LLAGMAERGISAADAELIFHQLLGFAGYGFPESHSASFALLVYASAWLRRYHPAAFACAL 910

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSV-----------NTPCVDFKVGDN-RIYYSL 839
            +  +           +DA++  +++    V             P      G+   I   L
Sbjct: 911  LNSQPMGFYAPHTLVEDAKRHGVEVRGVDVCASGWESGLEGRAPGEPAGAGEAPAIRLGL 970

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
              ++G+       I+ A   +P   L D   R     L+R  L  L  A AL        
Sbjct: 971  HLVRGLPRDVGDAIVAARRARPLADLGDLVRR---GGLSRAWLVRLAEADALG------- 1020

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
                SL   ++ A W          ++FA       D       + E  S  F       
Sbjct: 1021 ----SLAPDRRGAIWRSLAMEADGGDLFAGVTPAEPDATLPSASAAEEVSEDFATTS--- 1073

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
                 GHP+ V +  L    ++   E         + +A +V+ +Q+ +T  G
Sbjct: 1074 -VSVRGHPMAVLRGTLPGGAVRTARELTRLPDRAPVEVAGLVIVRQRPQTAAG 1125



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 119/283 (42%), Gaps = 27/283 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L+  S +S LEGA     ++ + +     A+A+TD N L+  +    +A   G+ 
Sbjct: 2   PRYAELRCRSCFSFLEGASHPEELVARASELGLSALALTDVNGLYGIVRAHGEAKRRGLP 61

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G +L +     L      +        +VLL    EGY  L  L +R +  +   ++
Sbjct: 62  LLVGAELVV---TGLATGRPAR--------LVLLAQDREGYAGLCRLATRAHGAEDPARA 110

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                     +  E +     G       A F  +   A  RL   K++FG RL + + R
Sbjct: 111 APRRPREEVAVALEAVAARARGLF-----ALFPGADGDAAARL---KEIFGARLALAVAR 162

Query: 189 HRGYDRYRESQVVQL-AYTHELPL-VATNNSLFLSEEDYEA-HDVLMAVAHSTVVSQKDR 245
           HR      E++V+   A    L + +A  N +   +   +   DVL  V H T V +  R
Sbjct: 163 HRVAG--EEARVLAARAIGRRLGIRIAVTNDVHTHDRRRQVLQDVLTCVRHGTTVDRAGR 220

Query: 246 PRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            R+ P  +  LK   EM  ++ D PE LE   EIA  C F L+
Sbjct: 221 -RLFPNAERTLKAPEEMARLWGDFPEGLEAAAEIADGCRFRLE 262


>gi|222087893|ref|YP_002546431.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter
            K84]
 gi|221725341|gb|ACM28497.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter
            K84]
          Length = 1133

 Score =  277 bits (708), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 262/1060 (24%), Positives = 459/1060 (43%), Gaps = 122/1060 (11%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  F  +   S++S LEGA     ++          + + D N++   ++          
Sbjct: 10   SAPFFEIGARSNFSFLEGASHPEEMVLGAKIAGLAGLGLADRNSVAGVVKAH-------- 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
              +I  Q     Q   ++     TP      I+      +G+  L  L+S   L  +G++
Sbjct: 62   --VIAKQHGYRFQPGARLVFSDGTP-----DILAFPQNRQGWAHLCRLLSAGNL--RGEK 112

Query: 128  SVRICL---SWLQEIGTEGLIMLTGGSSG---PIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             V  C+   S L E G E ++ L   ++    P  +A         E+ L      FG +
Sbjct: 113  GV--CILNESNLLEWGDEMMLALVPDAASVETPEGQAKL-------EECLARLWMRFGRK 163

Query: 182  LYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTV 239
            L++ L   + G DR   + +  LA  + + L+A+N  L+ + E     D+++++  H  +
Sbjct: 164  LHMVLSPAYDGRDRLVFATLSILALRNGVRLIASNEPLYHATERKPLADIVVSIREHVPI 223

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                 +     + YLK  +EM  +F D P+A+ NT +   R SF L              
Sbjct: 224  AEAGFKLAANAERYLKGGAEMARLFRDYPKAIANTQKFFNRLSFSL-------------- 269

Query: 300  CDDIQKEEENE-LRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSG 355
             D+++    +E +  + V+    RLA+    + Y     +   +++D+EL +I   ++  
Sbjct: 270  -DELKHNYPDESVPGETVSETLERLAREGAKRRYPDKIPEKVAKQIDYELALIRERQYEP 328

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL V   +++A+  NI +  GRGS A S   Y L IT+++P   +LLFERF++ +R   
Sbjct: 329  YFLTVHRIMEYARSRNI-LCQGRGSAANSTVCYCLGITEVNPEITTLLFERFISTEREEP 387

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF  ++RD+VI+++ + Y  E         S +A++A R+V +A  +       L
Sbjct: 388  PDIDVDFEHEKRDQVIQFIYDHYSKEHAGLTAAVTSYRARSAGREVAKAFGLSEDVQSAL 447

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAA 530
               +       +S          REARLA     D +  R+L  +  L G  RH + H  
Sbjct: 448  ASGVWGWSTEELSE---------REARLAGLDLKDKTTKRVLSYASTLMGFPRHLTQHVG 498

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FL 589
            G VI    L ++VP+      D  + ++N   ++   ++K D L L  LT L K+ D  L
Sbjct: 499  GFVITRDRLDEVVPIMHTAMKDRYMIEWNKDDLDSLNILKIDVLALGMLTCLAKAFDLLL 558

Query: 590  AQRGVK---VDLSLIPFDDH-ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
                VK    DL    + D    Y+++    T+G+FQ+ES      L  +QP    D++ 
Sbjct: 559  LHYDVKKQLADLGSGEYPDRIPVYNMICRADTIGVFQIESRAQMSMLPRLQPRKFYDLVI 618

Query: 646  LVSLYRPGPIDNIVV--YNNRKNGKEKIVSI---HPLIDPMLKETQGVIIYQEQVMQIAQ 700
             V++ RPGPI   +V  Y  R+        +    P +  +LK T GV ++QEQ MQIA 
Sbjct: 619  EVAIVRPGPIQGNMVHPYLKRREADRAGKDLDYPSPELKEVLKRTLGVPLFQEQAMQIAI 678

Query: 701  LLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
              +G++ +EAD LRRAM   K    +   +++ + G       +  A N FE +  F +Y
Sbjct: 679  TAAGFTPAEADKLRRAMATFKRTGTIHTFEKKMVEGMVARNYDREFAKNCFEQIKGFGEY 738

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GF +SHAA++A++ Y ++W+KT+YP  F AA +  +        +  +DAR+  +++ P 
Sbjct: 739  GFPESHAASFALLVYASSWIKTYYPDVFCAAMLNSQPMGFYAPAQLVRDAREHGVEVRPV 798

Query: 820  SVNTPCVDFKVGDNR----------------------IYYSLAAIKGVGTTTARHIMEAS 857
             +N    D  + + R                      +      +KG+  T    ++ A 
Sbjct: 799  DINRSEWDSLLEEARFDRNAIEPRHASMREVIRTNRAVRLGFRQVKGLSETDMGELV-AR 857

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
                + S+ D   R     L +  +E L  A A    G  R + L ++       + ++ 
Sbjct: 858  RGSGYASVRDLWLR---SGLAKSAIERLADADAFRSIGLERREALWAV-------RALDA 907

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ-----RVLGFYFSGHPLDVYK 972
                +   +F       +D+  L+  +  +       EQ     R L      HP+   +
Sbjct: 908  QSAAEKLPLF-----DLADRADLQVEADVSLPAMLPGEQVIEDYRYLSLSLKAHPVSFLR 962

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
                +MGI    +      G  + +A +V+ +Q+  +  G
Sbjct: 963  ADFARMGIVQNRDLPTIANGRMVTVAGLVLVRQRPGSANG 1002


>gi|153873151|ref|ZP_02001826.1| DNA polymerase III, alpha subunit [Beggiatoa sp. PS]
 gi|152070384|gb|EDN68175.1| DNA polymerase III, alpha subunit [Beggiatoa sp. PS]
          Length = 537

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 161/393 (40%), Positives = 234/393 (59%), Gaps = 35/393 (8%)

Query: 644  IALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +ALV+LYRPGP+ + +V  +  RK+G EK    HP + P+LK T GVI+YQEQVMQIAQ+
Sbjct: 1    MALVALYRPGPLQSGMVDDFIERKHG-EKFEYPHPDLAPILKSTYGVIVYQEQVMQIAQV 59

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            L+GY+L  AD+LRRAMGKK  EEM KQ+  F  GA++ G+ +  +  IF+L+ KFA YGF
Sbjct: 60   LAGYTLGGADILRRAMGKKKPEEMKKQRTVFTKGATERGVDEEKSTYIFDLMEKFAAYGF 119

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPS 820
            N SH+AAYA+++YQTAW+K HYP  F+AA ++ +MDN +K+  F ++ R    ++++ P+
Sbjct: 120  NLSHSAAYALLAYQTAWLKAHYPAAFMAAVLSADMDNSDKVVPFIEECRHAMKLKVLSPN 179

Query: 821  VNTPCVDFKV--GDNR-IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKK 876
            +N     F V  GD R I Y L AIKG G      ++E    K  F  L D C RV+ +K
Sbjct: 180  INASHYKFTVIAGDPRAIRYGLGAIKGAGEAALEGMIEERQSKGKFKDLFDLCRRVNLRK 239

Query: 877  LNRRVLESLVFAGALD-------CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            ++RRVLE L+ +GA D         G +R  ++ SLDN  K A+     + +   +IFA+
Sbjct: 240  VSRRVLEPLIKSGAFDELGPEPTKIGINRAVMMASLDNAIKEAERYSSEKASGQNDIFAN 299

Query: 930  EKGTFSDKIT---LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
               T S +     ++     N + +   E+  LGFY SGHP            +K YE  
Sbjct: 300  STQTKSPEKAPPFVQPVKPWNQTEQLNGEKESLGFYLSGHP------------VKPYETE 347

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            +A +  N +RLA +  +++++  R G   GWVT
Sbjct: 348  LAQL--NCVRLAHIKPTEKKQTIRAG---GWVT 375


>gi|301631164|ref|XP_002944676.1| PREDICTED: DNA polymerase III subunit alpha-like, partial [Xenopus
           (Silurana) tropicalis]
          Length = 298

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 149/292 (51%), Positives = 191/292 (65%), Gaps = 9/292 (3%)

Query: 178 FGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
           F  R Y+ LQR  R  D    +    LA   +LP+VAT+   F+ E++YEAH+  + +A 
Sbjct: 11  FPHRFYIELQRAGRPDDEAHVAAAAPLAARLQLPVVATHPIQFMDEDEYEAHEARVCIAE 70

Query: 237 STVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
             +++   R  R T + Y K  ++M ++F+DLP AL+NTVEIARRCS  L +  P LP F
Sbjct: 71  GEILANPRRVRRFTREQYFKTTAQMQALFADLPSALQNTVEIARRCSLTLLLGKPQLPDF 130

Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMK 352
                  I    E   R  +  GL+ RL      A  +    Q Y +RL+FEL+ I +M 
Sbjct: 131 PTPNGMPI----EEYFRYASHQGLKERLEHLYPHAAEREQQRQRYLERLEFELDTILKMG 186

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           F GYFLIV DFIQWAK N  PVGPGRGSGAGS+ AYAL ITD+DPL++ LLFERFLNP+R
Sbjct: 187 FPGYFLIVGDFIQWAKANGCPVGPGRGSGAGSLVAYALKITDLDPLQYKLLFERFLNPER 246

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           +SMPDFDIDFCQ  RD VI YV++KYG + V+QI TFG++ AKAA+RDVGRA
Sbjct: 247 VSMPDFDIDFCQANRDRVIDYVKDKYGKDAVSQIATFGTMAAKAAIRDVGRA 298


>gi|19548858|gb|AAL90826.1| polymerase III subunit alpha [Escherichia coli]
          Length = 302

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/303 (45%), Positives = 206/303 (67%), Gaps = 13/303 (4%)

Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
           LNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  
Sbjct: 1   LNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGH 60

Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
           PY  VDR+ KLIP DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  
Sbjct: 61  PYGFVDRISKLIPPDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGK 119

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+
Sbjct: 120 HAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALE 179

Query: 588 FLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            + +R  K     +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED
Sbjct: 180 MINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFED 239

Query: 643 IIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQV 695
           +IALV+L+RPGP+ + +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQV
Sbjct: 240 MIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQV 299

Query: 696 MQI 698
           MQI
Sbjct: 300 MQI 302


>gi|326800819|ref|YP_004318638.1| DNA polymerase III subunit alpha [Sphingobacterium sp. 21]
 gi|326551583|gb|ADZ79968.1| DNA polymerase III, alpha subunit [Sphingobacterium sp. 21]
          Length = 980

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 189/704 (26%), Positives = 343/704 (48%), Gaps = 50/704 (7%)

Query: 211 LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPE 269
           LVA  +  F  ++ Y  H  L A+  +T++++ +   +  +   L+   E+  ++S    
Sbjct: 150 LVALYSVTFQDKKHYRLHQYLRAIDQNTLLTKVNEIDICQETESLRPLEELQRLYSGYEY 209

Query: 270 ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            L+N  ++   CS           R  ++   D +  +   L    +AG+  R   G + 
Sbjct: 210 LLDNAHQLLANCS----TDDYHFGRLNKQTFTDSKANDAILLEKLTLAGMHDRYGSGNMQ 265

Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                   +Q+++ EL V+ +M F  YFLI  D I +++        GRGSGA S  AY 
Sbjct: 266 A-------KQKIEAELAVVKQMDFCAYFLITWDVINYSRSRGF-YHVGRGSGANSTVAYC 317

Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
           L ITD+DP+   L FERFLN  R S PDFDID+   +R+E+  Y+  +YG      + T 
Sbjct: 318 LGITDVDPIALDLYFERFLNSKRSSPPDFDIDYSWHQREEIQAYLLKRYGIAYTGLLGTI 377

Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            + + ++ +R++G+ L +P S++D        DP       A+  D         +P+  
Sbjct: 378 STFKGRSVIREIGKVLGLPKSEIDSF-----TDPTQ----DAVNQD---------NPTFR 419

Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
           +++ + + ++G+    S HA G+++ + P++    +    ++ +P  Q++M   E  GL 
Sbjct: 420 KIMAVYELMDGMPNQRSIHAGGVLVSEEPITFYTALDLPPKA-MPTVQWDMYAAEAIGLD 478

Query: 570 KFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP--FDDHETYHLLTTKGTLGIFQLESS 626
           KFD L  + +  ++++++ + Q +G  VD+  +     D +    L    ++G F +ES 
Sbjct: 479 KFDILSQRGIGHIKEAVELIRQNKGKSVDIHAVKSFLIDEQINRRLGASDSIGCFYIESP 538

Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGP-----IDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            MRQ L+ +Q      ++A  S+ RPG      + N + Y +     ++++ +HP++   
Sbjct: 539 AMRQLLQKLQCRDYLTLVAASSIIRPGVASSGMMRNYIYYFHH---PDEVIYLHPVMKEQ 595

Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK--ERFISGASKN 739
           LKET GV++YQE V+++    +G  L++ADVLRRAM  K +     QK  ++F   A   
Sbjct: 596 LKETYGVMVYQEDVIKVCYHYAGLDLADADVLRRAMSGKYRSRDAFQKLVDKFFLSAKTI 655

Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
           G  +     ++  ++ FA Y F+K+H+A++A+ SYQ+ ++KT++P EF+ A +       
Sbjct: 656 GRDEATTEEVWRQISSFAGYSFSKAHSASFAIESYQSLYLKTYFPQEFMVAVLN-NYGGF 714

Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI-MEASA 858
                +  + ++    +  P VN       +    +Y  L  I+G+     + I  E   
Sbjct: 715 YARWLYVHELKKTGATVHLPCVNNSEEKVTINGRDVYLGLIGIQGLNEHFIKLIPCERVT 774

Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
           + PF  L DF  R D   +    L  L+  GAL   G ++ +LL
Sbjct: 775 NGPFQDLTDFIRRTD---IGLEQLAILIKVGALRFTGRTKKELL 815



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 38/64 (59%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          ++L VHSSYSL  G + L+ ++++        + +TD NN  + ++F  KA  AGI+ ++
Sbjct: 1  MYLNVHSSYSLRYGTIDLDVLIEETRKLGISEMVLTDINNSSACMDFILKARVAGIRALV 60

Query: 72 GCQL 75
          G + 
Sbjct: 61 GIEF 64


>gi|318061695|ref|ZP_07980416.1| DNA polymerase III subunit alpha [Streptomyces sp. SA3_actG]
 gi|318079204|ref|ZP_07986536.1| DNA polymerase III subunit alpha [Streptomyces sp. SA3_actF]
          Length = 761

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 190/671 (28%), Positives = 309/671 (46%), Gaps = 57/671 (8%)

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            + + I   DPL   LL ERFL+  R  +PD DID    RR EV R +  ++G ERVA + 
Sbjct: 2    HLIGIAHADPLEHGLLMERFLSKRRSVLPDIDIDVESARRIEVYRAILGRFGPERVATVA 61

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR----- 502
               + + + A+RDVG AL +  + +DR+    P+               R R+AR     
Sbjct: 62   MPETYRVRHAIRDVGAALSLDPADIDRIATAFPH--------------IRARDARTAMDE 107

Query: 503  ---LADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
               LA  + +R       E+ + L+ L R  + H  G+++ D  L    P+       LP
Sbjct: 108  LPELASVAAEREKYGTFWELVEGLDALPRGVAMHPCGVLLSDASLLSRTPVVPTSGESLP 167

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLT 613
            + QF+ + +E  GL+K D LG++  + +  +L  L +  G   D+  IP  D  TY L+ 
Sbjct: 168  MAQFDKEDVEDLGLLKLDVLGVRMQSAMAHALSELDRATGEAPDIDAIPPGDERTYQLIR 227

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKI 671
            +  TLG FQ+ES G R  +  +QP    D++  +SL+RPGP+  D +  +   ++G+  +
Sbjct: 228  STETLGCFQIESPGQRDLVGRLQPSTFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPV 287

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
               HP + P L++T GV+++ EQV+ +   ++G    EAD +RR +     E   + +  
Sbjct: 288  RYPHPDLAPALEDTYGVVVFHEQVIDLVHTMTGCGRDEADRVRRGLSD--PESQGRIRFW 345

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            F   A++ G         +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  
Sbjct: 346  FAQRAAERGYDAETVTRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGL 405

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK---VGDN-------RIYYSLAA 841
            +T +     K +    DAR+  + I+P  VN      +   V +N        +   L+ 
Sbjct: 406  LTHDPGMYPK-RLLLADARRRGVPILPVDVNHSAPAHRIELVSENGPPAARWGVRLGLSD 464

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            + G+       I   +A +P+ SL DF  R    + +R V E L   GALD FG +R  L
Sbjct: 465  VHGMSEAEGERI---AAAQPYTSLLDFWQRA---RPSRPVAERLAQVGALDAFGANRRDL 518

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L  L  + +  +    + T           G  +    L      + + R   E  VLG 
Sbjct: 519  LLHLAELHRMGRGAASHGTQ-----LPLSGGRRTAPAGLPDL---DETERLSAELGVLGM 570

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
              S H +  ++  LR++G+           G  + +A    + Q    R G R+ + T  
Sbjct: 571  DASRHLMGDHQEFLRELGVVSARRLREAPHGATVLVAGAKAATQTPPIRSGKRVVFTTLD 630

Query: 1022 EPAKEYEANFF 1032
            +     +  FF
Sbjct: 631  DGTGLVDLAFF 641


>gi|321309589|ref|YP_004191918.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801433|emb|CBY92079.1| DNA polymerase III, alpha subunit [Mycoplasma haemofelis str.
           Langford 1]
          Length = 925

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 185/555 (33%), Positives = 305/555 (54%), Gaps = 40/555 (7%)

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
           YR+RLD EL+V+ +  F+ YFLIV + + WAK N+I +GPGRGS  GS+ AY L IT++D
Sbjct: 241 YRERLDLELSVVIQKGFADYFLIVQEAVSWAKNNDICIGPGRGSVCGSLLAYVLGITEVD 300

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           P+++ L FERFLNP+R  +PD DID   ++R  ++ +++++YG + V+ IITF + ++K 
Sbjct: 301 PIKYELYFERFLNPEREIIPDIDIDISNNKRHLLLEHLRDRYGSDHVSLIITFSTFKSKN 360

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
           ++R++ R+  +P  +VD                   A+++ F   +     ++R+L+   
Sbjct: 361 SVREIARSFGLPKEKVDS------------------ANENNFSHKQ--KELLNRILDFP- 399

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
                 +++S HAAG++I   PLS LVP+     S L VTQ+    +++  LIKFDFL L
Sbjct: 400 ------KNSSIHAAGVIISSTPLSSLVPLISKENS-LNVTQWEADDLKELNLIKFDFLAL 452

Query: 577 KTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
             L+++ + ++ +     + +D S I  +D + Y LL +  T  IFQ +S  +++ ++  
Sbjct: 453 HHLSVMDEIVNNIEDDLDLDLDWSSIDENDPKVYELLISGKTSFIFQFDSPKIKELIQKF 512

Query: 636 QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
           +P  + D+  L +++RPG  D I    NRK    +  S+    +  L +T G+IIYQEQV
Sbjct: 513 KPSSLLDLALLSAIHRPGASDQIPALLNRKFSNSQKDSLPEPFNSRLGDTYGLIIYQEQV 572

Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           MQI   ++      +D  RR +    K  +++  + F     KNG S+     I+  ++K
Sbjct: 573 MQIISQITSSHFGYSDNFRRNLSDPNK--IEECSKTFFERGLKNGYSEKDLNLIWSYISK 630

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
           FA YGFNKSHA AYA+ISY+  W+KT+YP  F    +    D+ E   +    +  FN Q
Sbjct: 631 FASYGFNKSHAVAYAIISYRLLWLKTYYPQYFYKEILDFS-DSAECFSEI--QSSGFNFQ 687

Query: 816 IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
              P + T  + +F   +N IY+ L+ I  +  +      E    K +DS+ D    + S
Sbjct: 688 Y--PKLGTSLLKEFFFSNNSIYFPLSRIVKLSPSFFEKFPEG---KRYDSVLDALKHLVS 742

Query: 875 KKLNRRVLESLVFAG 889
            K+++  L  L+  G
Sbjct: 743 LKISKEDLLILIRIG 757


>gi|325524831|gb|EGD02789.1| error-prone DNA polymerase [Burkholderia sp. TJI49]
          Length = 462

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 170/468 (36%), Positives = 253/468 (54%), Gaps = 28/468 (5%)

Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
           +++  EL +IA++ +  +FL V D +++A+  NI +  GRGS A SV  Y L IT++DP 
Sbjct: 7   KQIRHELALIAKLNYEPFFLTVYDIVKFARSQNI-LCQGRGSAANSVVCYCLGITEVDPD 65

Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
           + + LFERF++ +R   PD D+DF   RR+EVI+++  KYG +R A      + + +  L
Sbjct: 66  QSTTLFERFISEERGEPPDIDVDFEHQRREEVIQHIYKKYGKDRAALAAAVSTYRPRGVL 125

Query: 459 RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR-----FREARL--ADPSVDRL 511
           R+VG+AL +    VDR+ K       H        D SR     F    L  A P +   
Sbjct: 126 REVGKALGVDPMLVDRVAK------GH-----RWFDGSRDLLQKFAAVGLDPATPLIHAW 174

Query: 512 LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            +++ +L    RH S H+ G VI    L++LVP+         V Q++   +E   L+K 
Sbjct: 175 ADLAARLLNFPRHLSQHSGGFVISRGKLTRLVPVENAAMDGRRVIQWDKDDLESLKLMKV 234

Query: 572 DFLGLKTLTLLQKSLDF-LAQRGVKVD-----LSLIPFDDHETYHLLTTKGTLGIFQLES 625
           D L L  L+ L ++ D   A RG   D     L  IP +D  TY ++    T+G+FQ+ES
Sbjct: 235 DVLALGMLSALHRAFDMRTAWRGPAADGKPFTLKHIPQEDKATYDMICRADTVGVFQIES 294

Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK 683
                 L  +QP    D++  V++ RPGPI    V  Y  R+ G EKI      + P L+
Sbjct: 295 RAQMSMLPRLQPRTYYDLVIEVAIVRPGPIQGGAVHPYLRRRQGLEKISYPKDDLKPALE 354

Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGIS 742
            T+GV I+QEQVMQIA + +G++  EAD LRRAM   K K  ++K   + + G  + G  
Sbjct: 355 RTKGVPIFQEQVMQIAMIAAGFTAGEADELRRAMAAWKRKGNLEKYHAKIVDGMRERGYP 414

Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
              A  IFE +  F DYGF +SHAA++A ++Y ++W+K H P  FLAA
Sbjct: 415 PDFAEQIFEQIKGFGDYGFPESHAASFAKLAYASSWLKCHDPAIFLAA 462


>gi|120437403|ref|YP_863089.1| DNA polymerase III subunit alpha-2 [Gramella forsetii KT0803]
 gi|117579553|emb|CAL68022.1| DNA polymerase III subunit alpha-2 [Gramella forsetii KT0803]
          Length = 994

 Score =  274 bits (700), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 197/685 (28%), Positives = 332/685 (48%), Gaps = 66/685 (9%)

Query: 211 LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY-LKNRSEMVSIFSDLPE 269
           LV      F +++DY AH +L A+ ++T++S+  +      H+ +   +++   F D P 
Sbjct: 154 LVLLQTVSFRNKKDYNAHRLLRAIDNNTLLSKLPKSEQGFFHHQMIPPADIEKEFEDFPH 213

Query: 270 ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE--------V 321
            LENT  +   C    +                      ++ RN  +AG          V
Sbjct: 214 ILENTQNLMNLCQVNFEFG-------------------RDQNRNLKIAGRSEQEDEKKLV 254

Query: 322 RLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
            L    + + Y  ++ +   R++ EL VI R+ F  YFLI  D + +A+  N P   GRG
Sbjct: 255 ELCYKKLPERYPEKEEKVYARVEKELGVIIRLGFVSYFLINLDIVSYARSQNYPF-IGRG 313

Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
           SGA S+ AY L IT++DP+   L FERF+NP+R S PDFDIDF    R++V RY+  +Y 
Sbjct: 314 SGANSIVAYILGITNVDPIELDLYFERFINPNRSSPPDFDIDFSWKDRNDVTRYIFEQYE 373

Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
           H   A + T+ + + +A  R++G+   +P   +D+L +                    F 
Sbjct: 374 H--TALMGTYVTFKRRAVARELGKVFGLPKENIDKLSQ-------------------GFF 412

Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
             +  D     +L  S+ ++G   + S H+ GI+I +  +      +   +      Q +
Sbjct: 413 NYKELDHLEKLVLRYSRLIDGFPNYLSVHSGGIMILNDSVYNYAGTFLPPKG-FRTIQID 471

Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP-----FDDHETYHLLTT 614
           M   E  G+ KFD L  + L+ +  +++ + Q      +  I       +D     LL T
Sbjct: 472 MNIAEDVGIHKFDILAQRGLSKITDAIEIINQNQPTAKIKDIEDIKVFKEDSAINDLLKT 531

Query: 615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV---YNNRKNGKEKI 671
              +G+F +ES  MR  L  +Q D   +++A  S+ RPG I +  +   +  R    E+ 
Sbjct: 532 GDCMGVFYVESPAMRGLLTKLQTDNYMNLVAASSVIRPG-ISSAGMKEEFIRRHRDPERR 590

Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKI-KEEMDKQK 729
              HP++  ++K+T GV++YQE VM++A   +G  L +ADVLRR M GKK  K +M+K +
Sbjct: 591 KEAHPVMLKIMKDTYGVMVYQEDVMKVAFEFAGLDLDDADVLRRGMSGKKTSKGQMEKIE 650

Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
           E F     + G S  +   ++E ++ FA Y F K H+A+YAV SYQ+ ++K ++P+EF+ 
Sbjct: 651 ETFRENCKERGYSVQLTNEVWEQISSFAGYAFPKGHSASYAVESYQSLYLKKYFPLEFMV 710

Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
           A++         ++ + Q+ R+   +I  P +N       + +  +Y  L  +K +   T
Sbjct: 711 AAIN-NGGGFYDLQTYIQEIRKCGGEIHAPCINESDHPNTIHNKDVYLGLGYVKELEDKT 769

Query: 850 ARHIMEASA-DKPFDSLEDFCSRVD 873
              I+E      PF SL+DF  RV+
Sbjct: 770 IIQILENRQFFGPFKSLDDFIDRVN 794


>gi|148254432|ref|YP_001239017.1| error-prone DNA polymerase [Bradyrhizobium sp. BTAi1]
 gi|146406605|gb|ABQ35111.1| error-prone DNA polymerase, DnaE-like protein [Bradyrhizobium sp.
           BTAi1]
          Length = 1196

 Score =  274 bits (700), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 200/654 (30%), Positives = 321/654 (49%), Gaps = 53/654 (8%)

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247
           +RG DR R +++ +LA + ++PL+ATN+ L+   +     DVL  +   +T+ S   R +
Sbjct: 169 YRGDDRRRLARLARLAASSKVPLIATNDVLYHHPQQRMLQDVLTCIREKATIESIGRRLQ 228

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILPRFIEKECD 301
              + +LK   EM  +F D P+A+  T+    R  F L          P+ P        
Sbjct: 229 ANAERHLKPGHEMARLFRDYPDAITETIRFTDRIVFSLDQLKYQYPDEPVPP-------- 280

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL----DFELNVIARMKFSGYF 357
              K  +  L +   AG          AK Y   D   RL    + EL +IA + ++ YF
Sbjct: 281 --GKTAQGHLEDLTWAG----------AKTYFGDDLDDRLRAVLNKELALIAELNYAHYF 328

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           L V D +++A+   I +  GRGS A S   Y L IT +DP +  LLFERF++ +R+  PD
Sbjct: 329 LTVHDIVRYARSQGI-LCQGRGSAANSAVCYVLGITSVDPTKIDLLFERFISKERLEPPD 387

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D+DF   RR+EV++YV  +YG  R A I T    + ++A+RDVG+AL +       L  
Sbjct: 388 IDVDFEHSRREEVMQYVYRRYGRHRAAIIATVIHYRPRSAIRDVGKALGLTEDVTAVLAD 447

Query: 478 LIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            +       +S      D + R+A L  A+P + R +E++ +L    RH S H  G V+ 
Sbjct: 448 TVWGSWGDGLS------DIQVRQAGLDPANPMIRRAVELAAELINFPRHLSQHVGGYVLT 501

Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594
              L   VP+      D    +++   ++   ++K D L L  LT ++K  D +A  +G 
Sbjct: 502 QDRLDSYVPIGNAAMDDRTFIEWDKDDVDALSMMKVDVLALGMLTCIRKCFDLIADHKGR 561

Query: 595 KVDLSLIPF-DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
           +  L+ I   DD+E Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPG
Sbjct: 562 RYVLADIKSEDDNEVYQMLQRGESLGVFQVESRAQMNMLPRLKPRTFYDLVIEVAIVRPG 621

Query: 654 PI--DNIVVYNNRKNGKEKIVSIHPLID--------PMLKETQGVIIYQEQVMQIAQLLS 703
           PI  D +  Y  R+N  EK+    P  D         +L +T GV ++QEQ M+IA   +
Sbjct: 622 PIQGDMVHPYLRRRNRLEKVTYPSPSPDHGPADELYKVLHKTLGVPLFQEQAMRIAIEAA 681

Query: 704 GYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +S  EA+ LRRAM   +    +   +E+ +S     G     A + F+ +  F  YGF 
Sbjct: 682 KFSPEEANGLRRAMATFRNVGTIGSYEEKMVSSMIARGYDPAFAKSCFDQIKGFGSYGFP 741

Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
           +SHAA++A + Y ++W+K  +P  F  A +  +        +   DAR+  ++I
Sbjct: 742 ESHAASFAQLVYVSSWLKCFHPDAFCCALLNSQPMGFYAPAQIVGDARKNGVEI 795


>gi|209884317|ref|YP_002288174.1| error-prone DNA polymerase [Oligotropha carboxidovorans OM5]
 gi|209872513|gb|ACI92309.1| error-prone DNA polymerase [Oligotropha carboxidovorans OM5]
          Length = 1107

 Score =  274 bits (700), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 254/952 (26%), Positives = 421/952 (44%), Gaps = 112/952 (11%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL----EFSQKACAA 65
           ++  + + +++S L GA      + K +     AI I D N L   +    E   +    
Sbjct: 2   TYAEIGITTNFSFLRGASHPQEYVHKASRYGLYAIGIADRNTLAGVVRAYGELGNRNRKV 61

Query: 66  GIQP--IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
              P  +IG +L  D                  P I+      E Y RL +L+S+  L  
Sbjct: 62  RYNPKLLIGTRLVFD---------------DGTPDILAYPRDREAYGRLCQLLSKGKLRG 106

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
           + K    +    L E  +EG +++   S       + F+S ++  + L   K+L  + ++
Sbjct: 107 E-KGECHLRFDDLAEF-SEGQLLVVVSS-------YRFDSEKIL-RVLGALKELPAEGVW 156

Query: 184 V--NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           +   L  H G DR R  ++  LA    + L+ATN+ L+         DVL  +     + 
Sbjct: 157 LAATLFFH-GDDRRRMLRLEHLAAKTHVSLIATNDVLYHFHRRRALQDVLSCIREKVTIH 215

Query: 242 QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILPR 294
           +  R      + +L+   EM  ++ D P+ALE T+  + R +F L          P+ P 
Sbjct: 216 EAGRRLEAHAERHLQPHKEMARLYKDFPDALEETIRFSDRITFSLDQLKYQYPDEPVPP- 274

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                     K  +  LR+    G+     +G I +G      R  ++ EL +I ++ ++
Sbjct: 275 ---------GKTAQEHLRDLTETGIRKYFPEG-IDEGL-----RGTIEKELRLIEKLGYA 319

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFL V D +++A+  +I +  GRGS A S   + L IT ++P    +LFERF++ +R+ 
Sbjct: 320 HYFLTVHDVVRYARSQHI-LCQGRGSAANSAVCFMLGITSVNPAETDVLFERFISEERLE 378

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            PD D+DF   RR+EVI+ V  +YG  R A + T    + ++A+RDVG+AL +       
Sbjct: 379 PPDIDVDFEHSRREEVIQCVFQRYGRHRAAIVATVIDYRPRSAIRDVGKALGLTEDVTAA 438

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGI 532
           L   +       +S      + + ++A     +P + R +E++ +L G  RH S H  G 
Sbjct: 439 LADTVWGSWGDSLS------EMQVKQAGFDPTNPMIVRAVELATELIGFPRHLSQHVGGF 492

Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-Q 591
           V+    L   VP+      D    +++   I+   ++K D L L  LT ++K  D +A  
Sbjct: 493 VLTQDRLDTYVPIGHAAMEDRTFIEWDKDDIDILKMMKVDVLALGMLTCIRKCFDLIADH 552

Query: 592 RGVKVDLSLI-PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
           +G + +L+ +   DD   Y +L    +LG+FQ+ES      L  ++P    D++  V++ 
Sbjct: 553 KGRRYELADVRSKDDDPVYKMLQRGESLGVFQVESRAQMNMLPRLKPRTFYDLVIEVAIV 612

Query: 651 RPGPIDNIVV--YNNRKNGK-EKIVSIHPL------IDPMLKETQGVIIYQEQVMQIAQL 701
           RPGPI   +V  Y  R+N K E+I   +P       +  +L +T GV ++QEQ M+IA  
Sbjct: 613 RPGPIQGNMVHPYLKRRNLKPEEIEYPYPKGGNPDELKSILHKTLGVPLFQEQAMRIAMA 672

Query: 702 LSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            + ++  EA+ LRRAM   +    M K +ER +    K G     A + F+ +  F  YG
Sbjct: 673 AAEFTSEEANGLRRAMATFRHVGTMPKFEERMVGRMIKRGYDPKFAQSCFDQIKGFGSYG 732

Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
           F +SHAAA+A + Y +AW+K  +P  F    +  +        +   DAR   + +    
Sbjct: 733 FPESHAAAFAQLVYVSAWLKCFHPDAFACGLLNSQPMGFYAPAQIVGDARTNGVDVREID 792

Query: 821 V------NT---------------------PCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
           V      NT                      CVD    + R       ++  G    R I
Sbjct: 793 VSFSFSQNTLEEKSGRHHALRLGFRQIDGFKCVDPDEQEWRRRQGKDPLEDWG----RAI 848

Query: 854 MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
           +EA   +PF SLEDF       +L +R L  L  A A    G  R   L ++
Sbjct: 849 VEARMQQPFASLEDFARET---RLPKRALILLADADAFRSLGLDRRSALWAV 897


>gi|241068645|ref|XP_002408496.1| hypothetical protein IscW_ISCW016064 [Ixodes scapularis]
 gi|215492484|gb|EEC02125.1| hypothetical protein IscW_ISCW016064 [Ixodes scapularis]
          Length = 300

 Score =  273 bits (699), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 142/300 (47%), Positives = 202/300 (67%), Gaps = 10/300 (3%)

Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLAD----- 505
           +QAKA ++DV R L +PY   D L +L+P    +PVSL QAI +      A   +     
Sbjct: 1   MQAKAVIKDVARVLSLPYKFADYLTELVPFSAVNPVSLEQAIREVPELANAAKGNGLYNL 60

Query: 506 ----PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
                 +  +L+ S  LEGL+RH+STHAAGIVI    L  +VP+Y+D  SD+ V  ++MK
Sbjct: 61  EGEAELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVPVYKDANSDMLVVGYSMK 120

Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
           + E AGLIKFDFLGL+TLT++      L ++G++VD + + FDD++TY +L     +G+F
Sbjct: 121 YSEIAGLIKFDFLGLQTLTVITDCKKLLKEQGIEVDFNNMTFDDNKTYQMLCKGKGVGVF 180

Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
           Q ES GM+ AL  ++PD I D+IAL +LYRPGP++NI  Y   K+  ++   +H L+ P+
Sbjct: 181 QFESIGMKDALRRLKPDSIHDLIALGALYRPGPMENIPTYIACKHKLQQPDYLHELLKPI 240

Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
           L+ET GV+IYQEQV +IAQ+L+GY+L  AD+LRRAMGKKIK+EM++Q+E F+ GA  N I
Sbjct: 241 LEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRAMGKKIKKEMEEQEEIFVKGAIANNI 300


>gi|306842636|ref|ZP_07475284.1| error-prone DNA polymerase [Brucella sp. BO2]
 gi|306287228|gb|EFM58719.1| error-prone DNA polymerase [Brucella sp. BO2]
          Length = 830

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 202/701 (28%), Positives = 339/701 (48%), Gaps = 55/701 (7%)

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            ++ EL +IA++++  YFL V D +  A++  I +  GRGS A SV  + L IT ++P   
Sbjct: 59   INKELALIAQLEYEPYFLTVYDIVTHAREKGI-LCQGRGSAANSVVCFCLGITGVNPTEV 117

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERF++ +R   PD D+DF  +RR+EV++YV ++Y  +R A + T  S ++++A+RD
Sbjct: 118  DLLFERFISAERKEPPDIDVDFEHERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRD 177

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKL 518
            VG+AL +       L   +       +  Q I      R+A L   +P + R +E++  L
Sbjct: 178  VGKALGLSEDVTAALANTVWGLSGGGIDRQHI------RQAGLDPDNPIIQRAVELAITL 231

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
             G  RH S H  G V+    L + VP+           +++   I++ GL+K D L L  
Sbjct: 232  IGFPRHLSQHVGGFVLTRDRLDETVPIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGM 291

Query: 579  LTLLQKSLDFLAQR------GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LT ++K+ D + Q       G K+ L+ +P +D   Y +L    +LG+FQ+ES      L
Sbjct: 292  LTCIRKAFDLIHQHKPQLYGGEKLTLASLPREDKAVYDMLCKGDSLGVFQVESRAQMNML 351

Query: 633  EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKE--KIVSIHPLIDP------ML 682
              ++P    D++  V++ RPGPI  D +  Y  R++G+E   + S  P   P      +L
Sbjct: 352  PRLRPQEFYDLVIEVAIVRPGPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQIL 411

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGI 741
             +T+GV ++QEQ M+IA   + ++  EA+ LRRAM    K   +   +++ I G    G 
Sbjct: 412  GKTKGVPLFQEQAMRIAMEAAKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGY 471

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
             +T A N F  +  F +YGF +SHAA++A + Y +AW+K H+P  F AA +  +      
Sbjct: 472  DRTFAENCFNQIKGFGEYGFPESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYA 531

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------RIYYSLA-AIKGVGTTTAR--H 852
              +  +DAR+  + ++P  VN     F   DN       ++ +L    + +   + R   
Sbjct: 532  PAQIVRDAREHGVTVLPVDVN-----FSQWDNILEETPDVHLALRLGFRQIDGFSKRDTE 586

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            ++ A   +P+ ++ED   R+   +L+RR    L  A   D FG        SLD  ++ A
Sbjct: 587  LLIADRQEPYRTIEDMHRRL---RLDRRAFTLLADA---DAFG--------SLDIDRRSA 632

Query: 913  QWVEKNRTNKHE-NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             W  +   N     +F     +   +    K     +S     +         GHPL   
Sbjct: 633  LWAVRRLPNDETLPLFRAAAASELAQEPRTKLPEMAASEHVIADYETTRLSLKGHPLQYL 692

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            +  L   G+           G  +++A +V  +Q+  + KG
Sbjct: 693  REGLAAEGVSTCRAVQEGADGRRMKVAGVVTVRQRPGSAKG 733


>gi|41817811|gb|AAS11663.1| polymerase III subunit alpha [Escherichia coli]
 gi|41817813|gb|AAS11664.1| polymerase III subunit alpha [Escherichia coli]
 gi|41817815|gb|AAS11665.1| polymerase III subunit alpha [Escherichia coli]
 gi|41817817|gb|AAS11666.1| polymerase III subunit alpha [Escherichia coli]
 gi|41817821|gb|AAS11668.1| polymerase III subunit alpha [Escherichia coli]
 gi|41817823|gb|AAS11669.1| polymerase III subunit alpha [Shigella boydii]
 gi|41817825|gb|AAS11670.1| polymerase III subunit alpha [Shigella boydii]
 gi|41817829|gb|AAS11672.1| polymerase III subunit alpha [Shigella dysenteriae]
 gi|41817831|gb|AAS11673.1| polymerase III subunit alpha [Shigella boydii]
 gi|41817833|gb|AAS11674.1| polymerase III subunit alpha [Shigella sonnei]
          Length = 300

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 137/301 (45%), Positives = 204/301 (67%), Gaps = 13/301 (4%)

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
           P+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY
Sbjct: 1   PERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPY 60

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
             VDR+ KLIP DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA
Sbjct: 61  GFVDRISKLIPPDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHA 119

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +
Sbjct: 120 GGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI 179

Query: 590 AQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            +R  K     +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+I
Sbjct: 180 NKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMI 239

Query: 645 ALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQ 697
           ALV+L+RPGP+ + +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQ
Sbjct: 240 ALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQ 299

Query: 698 I 698
           I
Sbjct: 300 I 300


>gi|41817819|gb|AAS11667.1| polymerase III subunit alpha [Escherichia coli]
          Length = 300

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 137/301 (45%), Positives = 204/301 (67%), Gaps = 13/301 (4%)

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
           P+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY
Sbjct: 1   PERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPY 60

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
             VDR+ KLIP DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA
Sbjct: 61  GFVDRISKLIPPDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHA 119

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +
Sbjct: 120 GGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI 179

Query: 590 AQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            +R  K     +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+I
Sbjct: 180 NKRRAKNDEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMI 239

Query: 645 ALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQ 697
           ALV+L+RPGP+ + +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQ
Sbjct: 240 ALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQ 299

Query: 698 I 698
           I
Sbjct: 300 I 300


>gi|255606732|ref|XP_002538623.1| conserved hypothetical protein [Ricinus communis]
 gi|223511314|gb|EEF23760.1| conserved hypothetical protein [Ricinus communis]
          Length = 242

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 131/226 (57%), Positives = 162/226 (71%), Gaps = 1/226 (0%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P FVHL+VHS+YSLLEGAL L  IL K A D QPAIAI DTNNLF ALEFSQKA   G+Q
Sbjct: 17  PEFVHLRVHSAYSLLEGALPLKKILAKAAGDSQPAIAIADTNNLFVALEFSQKAMDEGLQ 76

Query: 69  PIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           PIIGCQ+ IDM+D  +   +G +     +PSIVLL +T +GY+RL++LVSR YL  +G  
Sbjct: 77  PIIGCQVSIDMEDGGEGEKRGPQQALAKLPSIVLLAATEQGYERLVDLVSRAYLGGEGNH 136

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
           +V I  SWL EIGTEG+I LTG  +GP+D A     +  A  RLL  K+LFGDRLY+ LQ
Sbjct: 137 AVHIAASWLDEIGTEGMIALTGSLTGPVDMALKEGHAPQALSRLLALKRLFGDRLYIELQ 196

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           RH  YDR  E +++ +AY HE+PLVATN + F + +DY+AHD LMA
Sbjct: 197 RHGTYDRRHEQKMIAMAYEHEIPLVATNEAFFPTRDDYDAHDALMA 242


>gi|150021400|ref|YP_001306754.1| DNA-directed DNA polymerase [Thermosipho melanesiensis BI429]
 gi|149793921|gb|ABR31369.1| DNA-directed DNA polymerase [Thermosipho melanesiensis BI429]
          Length = 823

 Score =  271 bits (694), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 200/655 (30%), Positives = 325/655 (49%), Gaps = 115/655 (17%)

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
           Y++RL  EL +I    F  YF  V    + AK+++I +GPGRGS  GS+ +Y L IT ID
Sbjct: 169 YKERLIRELEIIKEKNFLDYFHTVYKITKIAKEHDIAIGPGRGSAVGSLLSYMLGITKID 228

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           P++ +LLFERFLN  R   PD D+D   ++R E+I  ++ ++ +  V  I TF ++    
Sbjct: 229 PIKHNLLFERFLNKGRKEPPDIDLDVEDEKRKELIELLKKEFKY--VYYISTFSNIG--- 283

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
                                        P +++ IA++ +   + L+D           
Sbjct: 284 -----------------------------PKTIKKIANEYKISTSELSD----------- 303

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            L GL  H S HAAGI+I   P+   VP+  DV       +++M  + K G IKFD LGL
Sbjct: 304 -LLGLPTHKSVHAAGIIISKTPIK--VPIKEDV------IEWDMDSLNKIGYIKFDILGL 354

Query: 577 KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
           KTLT++ K    L ++  K  L      D  T++ ++   T GIFQLES+  ++ +  ++
Sbjct: 355 KTLTIMNK----LEKKIGKPKL------DKITFNFISKGYTNGIFQLESNISKRIIRAIK 404

Query: 637 PDCIEDIIALVSLYRPGPIDN-------IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
           P  I+++  ++SL RPGP+         I  +  RK   E           +L +T G+I
Sbjct: 405 PSSIDELSIVISLNRPGPLKAKLDRELAIAKWKQRKKSFE-----------LLNDTFGII 453

Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD----KQKERFISGASKNGISKTI 745
           ++QEQ+M IA+  + +S  EADVLR+ + KK K+ ++    K K+  ++  S+N  ++ I
Sbjct: 454 VFQEQIMLIAKKYANFSNEEADVLRKGIAKKEKKLVEPLIKKLKKNILNILSENETNELI 513

Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            +     + +F++Y FNKSHA AY+ ISY  A+ K H+P +F +  +  +   +EKI  F
Sbjct: 514 KI-----ILEFSEYAFNKSHAIAYSYISYSLAYFKKHFPKDFYSTLLKYDTTKIEKI-IF 567

Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
              +R F  +I+PP++N    + K      +  L  +KG+     + I+   A+ P++SL
Sbjct: 568 EMQSRGF--KILPPNINGNPENKK----EFHIPLTLVKGINEKIEKEII---ANAPYNSL 618

Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
           + F  +  +  +N  ++ESL+  G+ D    SR +LL  L  I          R+  +E 
Sbjct: 619 KGFFEK--NPNINFSIVESLIKIGSFDYLSESRRKLLMKLKEI----------RSGVNEK 666

Query: 926 IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
           I       F    + E   +E    R + E   LGF  S  P D +K +L  + +
Sbjct: 667 ILELSSSLFGKNFSNE-IKIEKLWERCDMEYNTLGFCIS-KPFDEFKNLLSPLSV 719


>gi|146339654|ref|YP_001204702.1| error-prone DNA polymerase [Bradyrhizobium sp. ORS278]
 gi|167016909|sp|A4YRD9|DNAE2_BRASO RecName: Full=Error-prone DNA polymerase
 gi|146192460|emb|CAL76465.1| Error-prone DNA polymerase [Bradyrhizobium sp. ORS278]
          Length = 1170

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 200/654 (30%), Positives = 321/654 (49%), Gaps = 53/654 (8%)

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247
           +RG DR R +++ +LA + ++PL+ATN+ L+   +     DVL  +   +++ S   R +
Sbjct: 169 YRGDDRRRLARLARLAASAKVPLIATNDVLYHHPQQRMLQDVLTCIREKASIESIGRRLQ 228

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILPRFIEKECD 301
              + +LK   EM  +F D PEA+  T+    R  F L          P+ P        
Sbjct: 229 ANAERHLKPGHEMARLFRDHPEAIAETLRFTDRIVFSLDQLKYQYPDEPVPP-------- 280

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL----DFELNVIARMKFSGYF 357
              K  +  L +   AG          AK Y       RL    + EL +IA + ++ YF
Sbjct: 281 --GKTAQGHLEDLTWAG----------AKTYFGDKLDDRLRAVLNKELALIAELNYAHYF 328

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           L V D +++A+   I +  GRGS A S   Y L IT +DP +  LLFERF++ +R+  PD
Sbjct: 329 LTVHDIVRYARSEGI-LCQGRGSAANSAVCYVLGITSVDPTKIDLLFERFISKERLEPPD 387

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D+DF   RR+EV++YV ++YG  R A I T    + ++A+RDVG+AL +       L  
Sbjct: 388 IDVDFEHSRREEVMQYVYHRYGRHRAAIIATVIHYRPRSAIRDVGKALGLTEDVTSVLAD 447

Query: 478 LIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            +       +S      D + R+A L   +P + R +E++ +L    RH S H  G V+ 
Sbjct: 448 TVWGSWGDGLS------DMQVRQAGLDPHNPMIRRAVELASELITFPRHLSQHVGGYVLT 501

Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594
              L   VP+      D    +++   ++   ++K D L L  LT ++KS D +A  +G 
Sbjct: 502 QDRLDSYVPIGNAAMDDRTFIEWDKDDVDALSMMKVDVLALGMLTCIRKSFDLIADHKGR 561

Query: 595 KVDLSLIPF-DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
           +  LS I   DD+E Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPG
Sbjct: 562 RYVLSDIKSEDDNEVYQMLQRGESLGVFQVESRAQMNMLPRLKPRTFYDLVIEVAIVRPG 621

Query: 654 PI--DNIVVYNNRKNGKEKIVSIHPLID--------PMLKETQGVIIYQEQVMQIAQLLS 703
           PI  D +  Y  R+N  EK+    P  D         +L +T GV ++QEQ M+IA   +
Sbjct: 622 PIQGDMVHPYLRRRNKLEKVTYPSPSPDHGPSDELYKVLHKTLGVPLFQEQAMRIAIEAA 681

Query: 704 GYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +S  EA+ LRRAM   +    +   +E+ +S     G     A + F+ +  F  YGF 
Sbjct: 682 KFSPEEANGLRRAMATFRNVGTIGSYEEKMVSNMIARGYDPAFAKSCFDQIKGFGSYGFP 741

Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
           +SHAA++A + Y ++W+K  +P  F  A +  +        +   DAR+  ++I
Sbjct: 742 ESHAASFAQLVYVSSWLKYFHPDAFCCALLNSQPMGFYAPAQIVGDARKNGVEI 795


>gi|149002436|ref|ZP_01827370.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP14-BS69]
 gi|147759373|gb|EDK66365.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP14-BS69]
          Length = 624

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 207/681 (30%), Positives = 341/681 (50%), Gaps = 94/681 (13%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++G
Sbjct: 4   QLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLG 63

Query: 73  CQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL-VSRMYLLDQGKQS 128
            ++ +   D + NL+                 L  ++ GYQ+L++L  ++M    QG+++
Sbjct: 64  LEMTVFVDDQEVNLR----------------FLALSSVGYQQLMKLSTAKM----QGEKT 103

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +   +L++I     +++            +F+  +  E          G   Y+ +  
Sbjct: 104 WSVLSQYLEDIA----VIVP-----------YFDRVESLE---------LGCDYYIGV-- 137

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 Y E+   +  +   LPL   N        D E   VL A+  +  +  ++ P  
Sbjct: 138 ------YPETLASEFHHPI-LPLYRVNA---FESRDREVLQVLTAIKEN--LPLREVPLR 185

Query: 249 TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           +      + S +  +F +  P+AL+N  ++    S+ L +    LPRF      +  +  
Sbjct: 186 SRQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDISLK-LPRF------NPARPA 238

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             ELR +A  GL        + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ 
Sbjct: 239 VEELRERAELGL--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFG 290

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R
Sbjct: 291 RSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYR 350

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DP 483
            + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I        
Sbjct: 351 PDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           A+  +LQ       FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +
Sbjct: 411 AYEGNLQ-------FRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYI 463

Query: 544 PM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
           P+ Y D   ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I
Sbjct: 464 PLKYGD---EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEI 520

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +
Sbjct: 521 DLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNF 580

Query: 662 NNRKNGKEKIVSIHPLIDPML 682
             RK+G+E++  + P+++ + 
Sbjct: 581 VARKHGQEEVTVLDPVLEDIF 601


>gi|228904737|ref|ZP_04068791.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
 gi|228854751|gb|EEM99355.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
          Length = 620

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 162/503 (32%), Positives = 261/503 (51%), Gaps = 63/503 (12%)

Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
           RL E++ ++E + R    HA G++I   P++  V + R  +    +  ++   +E  G I
Sbjct: 22  RLFELALEVESMPRTQGIHACGMLITAEPITNEVALVRG-KGGESIAGYDGPTLEAKGYI 80

Query: 570 KFDFLGLKTLTLLQKSLDFLAQR-GVKVDL-SLIPFDDHETYHLLTTKGTLGIFQLESSG 627
           KFDFLGLK L++++     +  R G  +D+ +LIP +D +T+ ++    T G+FQ+ES G
Sbjct: 81  KFDFLGLKNLSVVELCRRMVEDRYGYLIDVDNLIP-EDQKTFDMIQRGETDGVFQIESDG 139

Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
           M++   G+     E +IA VSLYRPGP+D I  Y    NG E++  +HP  D + + T  
Sbjct: 140 MKKMFMGLNKVDFETLIAGVSLYRPGPMDYIPKYTALANGHEEVPQVHPAFDEITRNTFS 199

Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
           ++IYQEQVMQ++  ++GYS  EADVLR+A+GKK  E ++   E   +  ++N +   +A 
Sbjct: 200 IMIYQEQVMQVSTEMAGYSKGEADVLRKAVGKKKIEILEPALEELHNRLTQNNVPTQVAT 259

Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
            I + +  FA Y FN+SHAA YA I+YQTA++K +YP+E++ A + +     +K+ K  +
Sbjct: 260 KICDDIRPFAGYAFNRSHAACYAYIAYQTAYLKANYPLEYMTALLQVFYTEEDKVVKLVK 319

Query: 808 DARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIME----------- 855
             R   I+++PP +N   + F + G+N I + L AIKG+G  T   I+E           
Sbjct: 320 VIRDMGIEVLPPDINRSEIGFTIEGENAIRFGLGAIKGLGEATLEAIIEERKPRMAPAVR 379

Query: 856 ------------------ASAD-----------KPFDSLEDFCSRVDSKKLNRRVLESLV 886
                             A+ D            PF S +D   R+  K  N++ + SL 
Sbjct: 380 DEDGLETVISKEEADEIAATPDLGIVVGSVAVGGPFTSAQDVIKRIPKKNFNKKAITSLC 439

Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
           ++GA D                   A+ +  NR     ++F   +G   D   +E+ +  
Sbjct: 440 YSGAFDAL-----------------AEGLCNNRFEYLAHMF-DIRGEAPDSELIEQITKY 481

Query: 947 NSSVRFENEQRVLGFYFSGHPLD 969
              ++FE E+ VLG Y SGH LD
Sbjct: 482 TDRIKFEKEREVLGLYISGHVLD 504


>gi|163733046|ref|ZP_02140490.1| DNA polymerase III, alpha subunit [Roseobacter litoralis Och 149]
 gi|161393581|gb|EDQ17906.1| DNA polymerase III, alpha subunit [Roseobacter litoralis Och 149]
          Length = 991

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 203/738 (27%), Positives = 345/738 (46%), Gaps = 43/738 (5%)

Query: 174 FKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
             + F  ++++ L  ++ G D  R + + + A    LP VA+   +       +  DV+ 
Sbjct: 176 LTRRFTGKIHIGLFPQYDGRDPQRFADLTEQARRLGLPTVASAAPVMHHGARRKLADVVT 235

Query: 233 AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
           A+     V    R  +   +  L++ +EM  +F     A++    +A+   F L      
Sbjct: 236 AIRTGCRVDDLGRDALPNSEARLRSEAEMRRLFKGFEAAVDRAHTLAQSLKFSLDELRYE 295

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            P  I +      +   + LR  A  GL  R   GA  K +      + L+ EL +I ++
Sbjct: 296 YPSEIAE-----NETPSDRLRRLAYEGLAWRYPAGASDKVH------RLLEHELTLIGKL 344

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
           K+  YFL V D + +A+  +I +  GRGS A SV  Y L +T + P   +++FERF++  
Sbjct: 345 KYEPYFLTVRDIVAFARSRDI-LCQGRGSAANSVVCYCLGVTSVSPEIGTMVFERFVSEA 403

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R   PD D+DF  +RR+EVI+++  +YG  R     T    + K A+R+VGRA+ +    
Sbjct: 404 RNEPPDIDVDFEHERREEVIQHIYERYGRHRAGLCATVVHYRGKRAIREVGRAMGLSEDT 463

Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD-------RLLEISQKLEGLYRH 524
           +  L             L            R+A+  +D       + L +  ++ G  RH
Sbjct: 464 ISALSS----------QLWGFFSTKGIEAERMAEIGLDANDRRLQQTLALVYEINGFPRH 513

Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            S H  G VI +  L +LVP+         V  ++   IE  G++K D L L  LT ++K
Sbjct: 514 LSQHVGGFVITEGRLDELVPIENATMEGRTVICWDKDDIETLGILKVDVLSLGMLTCIRK 573

Query: 585 SLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
           + D +     V   L+ +P +D   Y +L    ++G+FQ+ES      L  M+P C  D+
Sbjct: 574 AFDLMQMHHNVSHTLASLPPEDPVVYDMLCRADSIGVFQVESRAQMNFLPRMRPRCFYDL 633

Query: 644 IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
           +  V++ RPGPI  D +  Y  R+NG+E++      +  +L +T GV ++QEQ MQIA +
Sbjct: 634 VIEVAIIRPGPIQGDMVHPYIRRRNGEEEVSFPSDELGEVLGKTLGVPLFQEQAMQIAIV 693

Query: 702 LSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +G++  +AD LRR++   K    + + +  F+ G    G  +  A   F  +  F  YG
Sbjct: 694 GAGFTPDQADRLRRSLATFKKHGNVSEFRNLFLRGMKNKGYDEDFAERCFSQIEGFGSYG 753

Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
           F +SHAA++A++ Y ++W+K H+P  F  A +  +        +  +DAR+  + + P  
Sbjct: 754 FPESHAASFALLVYASSWIKCHHPGIFACALLNSQPMGFYAPAQIVRDAREHGVDVRPIC 813

Query: 821 VNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
           +N    +  +     G   +      IKGV    A  +  A  +  + S+ D   R   +
Sbjct: 814 INASFWENVMEPDGQGGLALRLGFRQIKGVSEEDATWLTAARGNG-YRSVRDVWRRAGLQ 872

Query: 876 KLN-RRVLESLVFAGALD 892
            +   R+ E+ VFA ALD
Sbjct: 873 PMMIERLAEADVFA-ALD 889


>gi|160902203|ref|YP_001567784.1| DNA polymerase III, alpha subunit [Petrotoga mobilis SJ95]
 gi|160359847|gb|ABX31461.1| DNA polymerase III, alpha subunit [Petrotoga mobilis SJ95]
          Length = 802

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 181/579 (31%), Positives = 310/579 (53%), Gaps = 70/579 (12%)

Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
           ++RL +ELN+I ++K   Y L V   +  AKKN I VGPGRGS  GS   Y L IT ++P
Sbjct: 174 KRRLSYELNIIKKLKVENYILTVKKIVDTAKKNGISVGPGRGSAVGSFLVYKLGITKVNP 233

Query: 398 LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
           + + LLFERFLN  R  +PD D+D   ++R ++I+ +Q ++G  +++QI T+ +++ K+A
Sbjct: 234 IEYDLLFERFLNEYRHELPDIDLDIDAEKRVDLIKALQKEFGENKISQIRTYSTMKIKSA 293

Query: 458 LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
           L+     L   Y+   ++     N P                    +  ++D+   +SQK
Sbjct: 294 LKKAEELL--GYNLEAKI-----NTPIR------------------SKENIDKFKSLSQK 328

Query: 518 ----------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
                     LEG+    S HAAG++I    L    P+    + ++P+ ++ M  ++  G
Sbjct: 329 EKTFFYAAYYLEGIEVAESVHAAGLIISQNDLRTFSPL---EKKEVPIIEWEMSDLKYLG 385

Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
           + KFD L L TLT L++         +++       +D +T+H L+   T GIFQL+S  
Sbjct: 386 VEKFDILALDTLTFLKR---------LQIKEKYRELNDSKTFHYLSKGLTKGIFQLDSKL 436

Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
            ++  + ++P   E++I L+++ RPGP+++ ++  Y N  + +         +  +  ET
Sbjct: 437 GQKLAQRIKPKNFEELILLLAINRPGPLESGMIDQYVNDDSPE--------YLKKIFSET 488

Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
           +GV++YQEQ+M+IAQ+L  +S  E+D+LR+A+ KK K+++   K +F++ ASK  I +  
Sbjct: 489 KGVLVYQEQIMKIAQILGEFSPQESDLLRKAVSKKEKDKITTFKNKFVTNASKK-IDEKE 547

Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
           A  +F  +  FA Y FNKSHA AYA I+Y  +  K   P  F    + ++  +V+ I   
Sbjct: 548 ATLLFSQIENFAQYAFNKSHAVAYAHITYWLSEKKFKDPSNFFLEYVKIKGVDVDVI--- 604

Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
             +A    ++I  P +  P   F +  +  +   L  IKG+G   ++   EA       S
Sbjct: 605 -NEASVLGVKIKLPDIRYP---FGLASETELILPLYIIKGIGRNVSQIFEEAK----LLS 656

Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
           LE+F + + +K +NR ++E ++ +GALD F  +R  LL+
Sbjct: 657 LENFFNFIINKNINRNIVELIIKSGALDYFNNNRKNLLR 695


>gi|160899695|ref|YP_001565277.1| DNA polymerase III subunit alpha [Delftia acidovorans SPH-1]
 gi|160365279|gb|ABX36892.1| DNA polymerase III, alpha subunit [Delftia acidovorans SPH-1]
          Length = 1128

 Score =  266 bits (681), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 232/816 (28%), Positives = 371/816 (45%), Gaps = 97/816 (11%)

Query: 251  DHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQ---VHAP---ILPRFIEKECDDI 303
            + +L++R  +  I+   P A L+ T++IA RC F L     H P   +LP          
Sbjct: 260  ERHLRSRLRLGGIY---PRAMLDATLQIAARCDFKLSEISYHYPQESVLPGM-------- 308

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              +    L      G   R  +G   K       R++L  EL +I+   +  YFL V D 
Sbjct: 309  --DARQTLAWHTWQGAAGRYPEGIPKK------VRKQLHNELKLISMCGYEMYFLTVHDI 360

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+  +I +  GRGS A SV  + L IT +DP   +LL  RF++ +R   PD D+DF 
Sbjct: 361  VRFARSQDI-LCQGRGSAANSVVCFCLGITAVDPTLQTLLIARFISRERSEPPDIDVDFE 419

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI---- 479
              RR+ VI+Y+  KYG +R A        + + ALRD G+AL +  + +D + +      
Sbjct: 420  HARRETVIQYIYEKYGRDRAALTAVVSCWRTRGALRDAGKALGVDAALIDAMARQHHWFS 479

Query: 480  ------------PNDPA----------HPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
                        P+DPA               + + DD      +L+       LE++ +
Sbjct: 480  DAEDQAAEPEPEPDDPALGWVRSKLLRLARLRERLGDDC----PQLSPQRARLWLELALQ 535

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            L    RH S H  G V+ D PL++LVP+         V Q++   ++   L+K D L L 
Sbjct: 536  LRDSPRHLSQHVGGFVLTDGPLTRLVPVEPAAMEGRSVIQWDKDDLDTMNLLKVDVLALG 595

Query: 578  TLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT+L+ SL   A  RG + +L+ IP +D  TY ++    T+G FQ+ES      L  ++
Sbjct: 596  MLTVLRGSLKARAALRGPRWELADIPKEDAATYDMICRADTVGTFQIESRAQMSMLPRLR 655

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVY------NNRKNGKEKIVSIHPLIDPMLKETQGVII 690
            P    D++  V++ RPGPI   +V+        R+ G E ++   P ++  LK T GV I
Sbjct: 656  PRVFYDLVVEVAIVRPGPIQGGMVHPYLQARERRRQGGELVLE-KPALEKALKRTLGVPI 714

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER-FISGASKNGISKTIAVNI 749
            +QEQVMQIA + + +S  +AD LRR+M    ++    + ER  I G   NG S   A  I
Sbjct: 715  FQEQVMQIAMIAADFSAGDADELRRSMAAWRRKGGVHRFERPLIDGMLANGYSAEFAQAI 774

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            F  +  F +YGF +SHA ++A+++Y +AW+K H P  FL A +  +        +  QDA
Sbjct: 775  FRQMLGFGEYGFPESHAYSFAMLAYASAWLKRHEPACFLMALLNAQPMGFYTPSQLIQDA 834

Query: 810  RQFNIQIMPPSVNTPCVD------------FKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
            R+  ++++P  V     D             ++    +   L  +  +  T+   + +  
Sbjct: 835  RRHGVRVLPVDVRHSDWDCTLEAPHERIAGVELPQPAVRLGLCMVAQLPKTSGERVAQVR 894

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
            A  PF S ED   R    +L R  L++L  A AL      R Q +     +Q        
Sbjct: 895  AQAPFRSTEDLALRA---RLQRAELQALAAADALQGLSGHRRQQMWDAAALQV------- 944

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
             +      +  HE       + L   + E   + F+      G     HPL + +  LR+
Sbjct: 945  -QPPLFAGVPVHEA-----PVQLAA-APEGEEILFDYA--ATGLSLRRHPLALLRDRLRR 995

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             G++   E   T+ G  +R   +V  +Q+  T KG+
Sbjct: 996  HGLRTALELRDTLAGMRVRACGIVTVRQRPPTAKGT 1031


>gi|255038661|ref|YP_003089282.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM
           18053]
 gi|254951417|gb|ACT96117.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM
           18053]
          Length = 989

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 238/885 (26%), Positives = 394/885 (44%), Gaps = 111/885 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS +SL  G +  + +L     +    +A+TD NN    L F + A    I+PI+G 
Sbjct: 3   LNCHSYFSLRFGTIPEDELLAMCRENGYDCVALTDINNTSGCLNFVRMAPRFDIKPIVG- 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
              ID ++ +  T Q           V L     G+Q L   +S   L            
Sbjct: 62  ---IDFRNGV--TQQ----------FVALAKNNAGFQVLNAYLSAQKL------------ 94

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                           G   P DRA       V    +  F+KL  +R     +   G +
Sbjct: 95  ---------------AGLPFP-DRAPEMEHVAV----IYPFEKLNKER-----REQFGPN 129

Query: 194 RYRESQVVQLAYTHELPLVATNNSL-------FLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            Y    + +L   H  PL    + L       F +++D+ AH +L A+  +T++S+    
Sbjct: 130 EYIGISMQELDKLHYSPLHRFRDRLVIRQPVTFRNKKDFNAHRLLRAIDENTLLSKLAAS 189

Query: 247 RVTPDHYLKNRSEMVSIF---SDLPEALENTVEIARRC----SFILQVHAPILPRFIEKE 299
               +     +++++       D    LENT ++   C    +F  +     L  F + E
Sbjct: 190 ETGNESEQIVQAKVLEYHFKQKDFRIILENTRKLMDECEIRFTFGNEREHQNLKIFGKNE 249

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +D +K     LR+     L  R       + +       R+  EL++I +  F  +FL+
Sbjct: 250 EEDFKK-----LRSMTYQALGYRYGDNITDEIF------DRIAKELDMIRQQNFVPFFLV 298

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
             D + +A++       GRGSGA S+ AY L IT++DP+   L FERF+N  R + PDFD
Sbjct: 299 NHDIVSYARRKGYYY-VGRGSGANSIIAYLLNITNVDPIELDLYFERFINLHRKNPPDFD 357

Query: 420 IDFCQDRRDEVIRYVQNKYGHE-RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           IDF    R++V RY+ + YG   + A + T+ + Q  +A+R++G+   +P  ++D L   
Sbjct: 358 IDFSWRDREDVTRYIFDTYGKNGQAALLATYSTFQHNSAVRELGKVFGLPAYEIDALS-- 415

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
             N    P  L  ++         L     D L   +Q       H S HA GI+I  RP
Sbjct: 416 --NGKYDPKKLDQLSG--------LVIRYADYLQANNQP-----NHLSIHAGGILISQRP 460

Query: 539 LSQLVPMYRDV-RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKV 596
           +        DV     P TQF+M   E  GL K+D LG + L  ++++L+ +   R    
Sbjct: 461 MHYFTAT--DVPPKGFPTTQFDMVIAEDVGLNKYDILGQRGLAKIKETLEIIRYNRPEAP 518

Query: 597 DLSLIPF----DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
           D  +        D +   L+     +G F +ES  MR  L+ ++ D    ++A  S+ RP
Sbjct: 519 DFDINDVRKFKTDPKINDLIRQAQCIGCFYVESPAMRMLLKKLEVDNYLGLVAASSIIRP 578

Query: 653 GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           G   + ++  Y  R    EK    HP +  +++ET G+++YQE V+++A   +G +L EA
Sbjct: 579 GVAKSGMMREYILRHRHPEKRSEAHPRLLELMEETYGIMVYQEDVIKVAHYFAGLTLGEA 638

Query: 711 DVLRRAMGKKI--KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
           DV+RR M  K   +EE ++ K+++       G  + + ++++  +A FA + F K H+A+
Sbjct: 639 DVIRRGMSGKFRGREEFERVKKKYFKNCRSKGYDEAMTMDVWNQIASFAGFAFAKGHSAS 698

Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
           YAV SYQT ++KT++P+EF+ A +          + +  +AR     +  P VN      
Sbjct: 699 YAVESYQTLFLKTYFPLEFMVAVLN-NGGGFYAPELYIHEARMLGAHVHAPCVNHSEAHA 757

Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRV 872
            +  ++IY  +  +  +   T   I+ A   D  F SL DF  RV
Sbjct: 758 TIEGDQIYLGMQFLNDLEAKTIDRILAARGQDGAFTSLNDFLDRV 802


>gi|86131543|ref|ZP_01050141.1| DNA polymerase III alpha subunit [Dokdonia donghaensis MED134]
 gi|85817988|gb|EAQ39156.1| DNA polymerase III alpha subunit [Dokdonia donghaensis MED134]
          Length = 1008

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 207/753 (27%), Positives = 358/753 (47%), Gaps = 75/753 (9%)

Query: 175 KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
           K  F D  Y+ +  H+  ++ R S + +L  TH+L ++ T +  F  + D+  H +L A+
Sbjct: 123 KTTFSDNEYIGIT-HKNLNKLRFSPLSKL--THKLVMLHTVS--FRDKRDFNTHRLLRAI 177

Query: 235 AHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS--FILQVHAPI 291
             + ++S    +    P+H      ++   FS  P  L N   I + CS  F  +   P 
Sbjct: 178 DKNMLLSMLPKKEEGHPEHTFIEAKDLRLQFSQYPHLLSNAEHILKSCSIYFNFKKGKP- 236

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVI 348
                 +    +   EE + + K VA     L +  + + Y        ++RL  EL++I
Sbjct: 237 -----SQNLTTLLGSEERDYK-KLVA-----LCKKGLPERYKDNITYAVKRRLVKELSLI 285

Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
            + K+  +FLI    I++A+  +     GRGSGA S+ AY L ITD+DP+   L FERF+
Sbjct: 286 RQQKYVAFFLINWKIIEYARSKDY-FYVGRGSGANSIVAYLLRITDVDPIELDLYFERFM 344

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE-RVAQIITFGSLQAKAALRDVGRALQM 467
           N  R + PDFDIDF    R++V RY+  ++G + +VA + ++ + +   A+R++G+   +
Sbjct: 345 NLYRATPPDFDIDFSTWDREDVTRYIFEEFGSKAQVALLGSYVTFKHSGAVRELGKVFGL 404

Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
           P  ++D+L K                   R+  ++L D     +++ +Q L G   + S 
Sbjct: 405 PKFEIDKLSK------------------GRYNSSQL-DNIKKTIIKYAQILHGKPNYTSI 445

Query: 528 HAAGIVIGDRPL-----SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
           HAAGI+I   P      + L P         P  QF+M   E  GL KFD LG + L  +
Sbjct: 446 HAAGILISQHPTHYFSATNLPP------KGFPTVQFDMHIAEDVGLYKFDILGQRGLGKI 499

Query: 583 QKSLDFLAQRGVKVDLSLIP-----FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
           + ++  +      + L  I      F D +   +++    +G F +ES  MR  L  +  
Sbjct: 500 KDAIAIIKDNNPGITLPDIHNARQFFTDQKINQMISNADCIGCFYVESPAMRMLLRKLSV 559

Query: 638 DCIEDIIALVSLYRPGPIDN------IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
           D    ++A  S+ RPG   +      I+ + + K  K+K    HP++  ++ +T GV++Y
Sbjct: 560 DNYLTLVAASSIIRPGVSKSGMMREYILRHKDPKRAKQK---GHPVLLDIMPDTYGVMVY 616

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKI--KEEMDKQKERFISGASKNGISKTIAVNI 749
           QE V+++A   +G  L EADVLRR M  K   ++E    KE+F +     G    +   I
Sbjct: 617 QEDVIKVAHHYAGLDLGEADVLRRGMSGKYRSRQEFLMVKEKFEANCLARGEKIEVINEI 676

Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
           +  +  FA Y F K H+A+YAV SYQ+ ++K ++P+E++ A++        + + + Q+A
Sbjct: 677 WRQIESFAGYAFAKGHSASYAVESYQSLYLKCYFPLEYMVATVN-NGGGFYRTETYLQEA 735

Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
           ++    I PP +N   +   +  N IY     ++ +       I+    +  F SL +F 
Sbjct: 736 KKKGAIIHPPCINKSQIKTIIKGNNIYLGFQHLQSLEKKNIVAIINERHNGLFSSLHNFI 795

Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            RV    ++   L+ L+   A      ++ QLL
Sbjct: 796 DRV---PMSLEQLDLLIRIEAFKSLNINQRQLL 825



 Score = 46.2 bits (108), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 17/121 (14%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           ++L  HS YSL  G +S   ++D  A       A+TD NN    L F + A   GI+PI+
Sbjct: 1   MYLNNHSFYSLRYGTISEVELVDLAAKQGLTCFALTDINNTSGCLSFIKNAQEKGIKPIV 60

Query: 72  G---------CQLDIDMQDN--LKMTN------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
           G         C + +   +N  L++ N        KT FP    I   V T   ++ ++E
Sbjct: 61  GVDFRNGNHQCYITLAKNNNGFLEINNFLSHHLHHKTSFPDHSPIFKDVITIYPFENVLE 120

Query: 115 L 115
           L
Sbjct: 121 L 121


>gi|225389824|ref|ZP_03759548.1| hypothetical protein CLOSTASPAR_03572 [Clostridium asparagiforme DSM
            15981]
 gi|225044134|gb|EEG54380.1| hypothetical protein CLOSTASPAR_03572 [Clostridium asparagiforme DSM
            15981]
          Length = 561

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 157/432 (36%), Positives = 236/432 (54%), Gaps = 20/432 (4%)

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            QLES GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   KN +  I    P ++P+
Sbjct: 1    QLESGGMKSFMKELKPGSLEDIIAGISLYRPGPMDFIPKYIKGKNDRSAITYDCPQMEPI 60

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF--------I 733
            L  T G I+YQEQVMQI + L+GY++  +D++RRAM KK    M+K+++ F        +
Sbjct: 61   LGPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSKKKASVMEKERQNFVYGNEEEGV 120

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
             G   NG+ +  A +I++ +  FA Y FNKSHAAAYAV+SYQTA++K +YP+EF+AA M+
Sbjct: 121  KGCVNNGLEERTANHIYDEMTDFAKYAFNKSHAAAYAVVSYQTAYLKYYYPLEFMAALMS 180

Query: 794  LEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
              MDNV K  ++    RQ   I I+PP +N     F V  N I Y L+AIK VG +    
Sbjct: 181  SVMDNVTKFSEYILTCRQIMGIPILPPDINEGESGFSVSGNAIRYGLSAIKSVGKSVVDT 240

Query: 853  IM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I+ +  A  PF S+EDF  R+  K++N+R LE+ + +GALD    +R Q +  +  + + 
Sbjct: 241  IIADREAGGPFRSMEDFVGRMTHKEVNKRTLENFIKSGALDTLPGTRKQKIAVMPVLLES 300

Query: 912  AQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 K+      ++F  A E+   + +IT  +            E+ +LG Y SGHPL+
Sbjct: 301  KARERKSVIEGQLSLFDIAGEEERDNFQITFPEVGEYTKEELLVFEKEILGVYISGHPLE 360

Query: 970  VYKPILRKMGIKG-----YEESVATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             YK + +K           +E     R   G  + +  +V  K  K TR    + ++T  
Sbjct: 361  DYKDVWQKTVTANASDFIVDEEAGGARVTDGARVVIGGLVAGKTVKTTRTNQLMAFITLE 420

Query: 1022 EPAKEYEANFFP 1033
            +     E   FP
Sbjct: 421  DLMGSVEVIIFP 432


>gi|41817827|gb|AAS11671.1| polymerase III subunit alpha [Shigella flexneri]
          Length = 300

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 135/301 (44%), Positives = 201/301 (66%), Gaps = 13/301 (4%)

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
           P+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR    PY
Sbjct: 1   PERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVRGHPY 60

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
             VDR+ KLIP DP   ++ +A   + +  E   AD  V  L+ +++KLEG+ R+A  HA
Sbjct: 61  GFVDRISKLIPPDPGMTLA-KAFEAEPQLPEIYEADEEVKALINMARKLEGVTRNAGKHA 119

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +
Sbjct: 120 GGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI 179

Query: 590 AQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            +R  K     +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+I
Sbjct: 180 NKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMI 239

Query: 645 ALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQ 697
           ALV+L+RPGP+ + +V N  +RK+G+E+I        H  +  +L+ T G+I+YQEQVMQ
Sbjct: 240 ALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKSVLEPTYGIILYQEQVMQ 299

Query: 698 I 698
           I
Sbjct: 300 I 300


>gi|311747904|ref|ZP_07721689.1| putative DNA polymerase III alpha subunit [Algoriphagus sp. PR1]
 gi|126575898|gb|EAZ80208.1| putative DNA polymerase III alpha subunit [Algoriphagus sp. PR1]
          Length = 985

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 199/709 (28%), Positives = 333/709 (46%), Gaps = 57/709 (8%)

Query: 211 LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPE 269
           LV      F S+ D+ AH +L ++  +T++S+     +  P     + ++ V+   +   
Sbjct: 150 LVMLQPVTFTSKIDFNAHRLLRSIDLNTLLSKLPTEEQGDPADRFYSYADAVARCENHSY 209

Query: 270 ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE--LRNKAVAGLEVRLAQGA 327
            L N  ++   C F     A      ++ + D +  + E+   LR +   G   R     
Sbjct: 210 LLANAQKLLEHCQFSFYFQA------VKNKRDVLGSDWEDYDFLRQETFKGALNRYPDLT 263

Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                      QR++ EL +I +  F+ YFLI  D + +A++ N     GRGSGA S+ A
Sbjct: 264 ATIS-------QRIEKELELIQQKAFTSYFLINYDIVTFAQQRNF-YHVGRGSGANSIVA 315

Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG---HERVA 444
           Y L ITD+DP+   L FERF+N  R + PDFDIDF    RDEV  Y+  KY     E V+
Sbjct: 316 YCLGITDVDPIELDLYFERFINLYRENPPDFDIDFSWKDRDEVTDYIFRKYNQGKQEHVS 375

Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  + + Q  +  R++G+   +P S ++              SL   AD   F   +  
Sbjct: 376 LLAAYSTFQYNSVFRELGKVFGLPKSDIE--------------SLIHFADKPNFEPDQFG 421

Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
                 +++ SQ L  +  H + HA GI+I  +P+          +   P++  +M   E
Sbjct: 422 ----KLIIKYSQVLHDMPSHLTVHACGILISHKPIHYYTATEMPPKG-FPLSHIDMHVAE 476

Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP--FDDHETYHLLTTKGTLGIF 621
             GL KFD L  + L  ++ +++ + Q +GVKVD+  +     D      L    T+G F
Sbjct: 477 DIGLHKFDILSQRGLGHIKSAIEIIYQNQGVKVDIRKVEQFKKDQRIKEHLRDGHTIGAF 536

Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLID 679
            +ES  MR  L  M+ D   +++A  S+ RPG   + ++  Y  R   +E+    HP++ 
Sbjct: 537 YVESPAMRMLLAKMKADEYLELVAASSIIRPGVARSGMMREYILRHVDEERRKIAHPVLA 596

Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK--IKEEMDKQKERFISGAS 737
            ++ ET G+++YQE V+++A   +G SL EADVLRR M  K   K+E  + K+RF +   
Sbjct: 597 DIMPETYGIMVYQEDVIKVAHYFAGLSLGEADVLRRGMSGKSRSKDEFQRVKDRFFNNCR 656

Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
           + G    IA  ++  +  FA Y F K H+A++AV SYQ+ ++K ++P+EF+   +     
Sbjct: 657 EKGHDDKIAGEVWHQIESFAGYSFAKGHSASFAVESYQSLYLKAYFPLEFMVGVIN-NFG 715

Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EA 856
                + +  + R     I  P +N      ++    +Y     +K +   +   I+ E 
Sbjct: 716 GFYHTEFYIHELRMNGADIQAPHINESEYLTRITGITVYLGFIHLKYLEKASVEKILTER 775

Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF---GYSRMQLL 902
             +  F  L DFC RV+        LE L+    ++CF   G ++ +LL
Sbjct: 776 RKNGHFIGLADFCGRVEIS------LEQLLILIRINCFRFTGKTKQELL 818


>gi|157363879|ref|YP_001470646.1| DNA-directed DNA polymerase [Thermotoga lettingae TMO]
 gi|157314483|gb|ABV33582.1| DNA-directed DNA polymerase [Thermotoga lettingae TMO]
          Length = 844

 Score =  265 bits (676), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 179/576 (31%), Positives = 294/576 (51%), Gaps = 72/576 (12%)

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
           Y+ R + E+ +I +M    YF  V   +  A+  NI VGPGRGS  GS+ A+ L IT ID
Sbjct: 173 YQPRFESEVEIIEKMNLESYFYTVKKIVDTARSMNICVGPGRGSAVGSLVAFILGITQID 232

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           P++  LLFERFLN  R   PD DID    +R  +I  +   +     AQI +F +L    
Sbjct: 233 PVKHDLLFERFLNEYRQEPPDIDIDVEDRKRSMLIEQLIRVFPF--CAQISSFSTL---- 286

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
                                          SL++I  ++R    RL     D  +++  
Sbjct: 287 -------------------------------SLKSINAEAR----RLNLTIKDEHIKLLN 311

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KL   YR  S HAAG++I +  L+  +PM RD  S+  + +++M  ++  G+ K D LGL
Sbjct: 312 KLP--YRR-SVHAAGLIIANEVLN--LPMVRD--SNFRILEYDMDSLQGIGVTKIDLLGL 364

Query: 577 KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            TLT++        ++ +K+D   +P DD  TY ++++  T GIFQLES  +R     ++
Sbjct: 365 TTLTMISN-----MKKTLKIDS--VPVDDFSTYEMISSGKTTGIFQLESLPVRSLCRQVR 417

Query: 637 PDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
           P    ++  L+++ RPGP+   +  +Y  RK G  +    H   + +  ET GV+IYQEQ
Sbjct: 418 PQEFNELSVLLAINRPGPLIARLNRIYAERKRGCNR--EYH---EDLFPETFGVVIYQEQ 472

Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
           +M++A  ++  S +E+D+ R+AM  K +  M    E+  +     G SK+    +  +L 
Sbjct: 473 IMKLAMSMADMSPAESDLFRKAMSHKDRLIMKAAVEKLRNKMIDKGYSKSFVNELANILI 532

Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
           +F+ Y FNKSH+ AYA++SYQ A++K H+P  F    +    ++  K+    Q+ R    
Sbjct: 533 QFSSYAFNKSHSVAYAMLSYQLAYIKNHFPKVFFQHYIKEHSNDPSKVFAAVQELRTTGF 592

Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
           +++ PSVN   VD K  +++    + AI GVG++  +     +   PF+ ++DF  +   
Sbjct: 593 EVIQPSVNP--VDLK--EDQFQLPMEAIAGVGSSVVQLCQNRA---PFEDIQDFAKKTS- 644

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
             L    ++ L  AGA DC  ++R   +++ ++ QK
Sbjct: 645 --LPLSTIQRLAHAGAFDCIYHTRENSIKAFNSFQK 678


>gi|218514385|ref|ZP_03511225.1| DNA polymerase III subunit alpha [Rhizobium etli 8C-3]
          Length = 256

 Score =  264 bits (675), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 129/222 (58%), Positives = 159/222 (71%), Gaps = 1/222 (0%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +P F+HL+VHS+YSLLEGAL L  I+ K A D QPAIAITDTNNLF ALEFSQKA   G+
Sbjct: 16  TPGFIHLRVHSAYSLLEGALPLKKIIYKAAGDNQPAIAITDTNNLFVALEFSQKAMDDGL 75

Query: 68  QPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           QPIIGCQ+ IDM+D L+   +G +     +PSIVLL +T  GY+RL++LVSR YL     
Sbjct: 76  QPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATEAGYERLVDLVSRAYLGGDSN 135

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
           Q++ I  SWL+E GTEGLI LTG  +GP+D A     +  AE RLL  K+LFGDRLYV L
Sbjct: 136 QAIHIRASWLEEAGTEGLIALTGALTGPVDAAIREGHTAQAEARLLMLKRLFGDRLYVEL 195

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
           QRH  YD+  E ++V LAY H+LPLVATN + F + +DY AH
Sbjct: 196 QRHGTYDKPHEQKIVGLAYAHDLPLVATNEAFFPTRDDYHAH 237


>gi|90423241|ref|YP_531611.1| error-prone DNA polymerase [Rhodopseudomonas palustris BisB18]
 gi|90105255|gb|ABD87292.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 1112

 Score =  264 bits (674), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 231/854 (27%), Positives = 385/854 (45%), Gaps = 83/854 (9%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL----EFSQKAC 63
           +P +  + + +++S L G     + + + +  + P I I D N L   +    E   +  
Sbjct: 2   TPVYAEIGITTNFSFLRGGSHPQDYVQQASELRLPVIGIADHNTLAGVVRAYSELRNERL 61

Query: 64  AAGIQPIIGCQLD-IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR-MYL 121
           A   + +IG +L  ID                  P I++       Y RL +L++R    
Sbjct: 62  AHKPRLLIGARLVFID----------------GTPDILVYPRDRAAYGRLCQLLTRGKRA 105

Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--- 178
            D+G+    + L  L E     L++L          A           RLL   + F   
Sbjct: 106 ADKGE--CHLGLDDLAEFAEGQLLVL----------ALPHRFEDAEAGRLLARLQGFAAD 153

Query: 179 GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS- 237
           G  L  +L  +RG DR R  ++ QLA    LPL+ATN  L+         DVL  V    
Sbjct: 154 GVWLAASLL-YRGDDRRRLQRLQQLAAQARLPLLATNEVLYHHPARRPLQDVLSCVREKL 212

Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPR 294
           T+ S   R     + +LK   EM  +F D P+A+  T+  A R  F L   Q   P    
Sbjct: 213 TLESIGTRLEANAERHLKPAQEMARLFRDCPQAIAETMRFAARIQFSLDQLQYQYP---- 268

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
               E     K  +  L +   AG      +G       +   ++ L  EL +I +++++
Sbjct: 269 ---NEPVPAGKTAQRHLEDLTWAGAHKYFPRGI------SPHLKKTLRKELRLIRKLRYA 319

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFL V D + +A+  NI +  GRGS A S   Y L IT ++P+   LLFERF++ +R+ 
Sbjct: 320 HYFLTVHDIVCYARSQNI-LCQGRGSAANSAVCYVLGITAVNPIEIDLLFERFISKERLE 378

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            PD D+DF   RR+EV++Y+  +YG +R A I T    + ++A+RDVG+ L +       
Sbjct: 379 PPDIDVDFEHSRREEVMQYIYRRYGRDRAAIIATVIHYRPRSAIRDVGKVLGLTEDVTSA 438

Query: 475 LCKLIPNDPAHPVSLQAIAD---DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
           L   +       ++   +     D R       +P + R ++++ +L G  RH S H  G
Sbjct: 439 LADTVWGSWGRGLNEMQVTQAGLDPR-------NPLIARAIDLASELIGFPRHLSQHVGG 491

Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-A 590
            V+ +  L   VP+      D    +++   ++   ++K D L L  LT ++K  D + A
Sbjct: 492 YVLTEDRLDSYVPIGNAAMDDRTFVEWDKNDVDTLKMMKVDVLALGMLTCIRKCFDLIDA 551

Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            +G +  L+ +P +    Y +L    +LG+FQ+ES      L  ++P    D++  V++ 
Sbjct: 552 HKGERWALATVPREVPAVYDMLCRSESLGVFQVESRAQMNMLPRLKPRQFYDLVIEVAIV 611

Query: 651 RPGPI--DNIVVYNNRKNGKEKIVSIHPL--------IDPMLKETQGVIIYQEQVMQIAQ 700
           RPGPI  D +  Y  R+N +E +    P         +  +L +T GV ++QEQ M+IA 
Sbjct: 612 RPGPIQGDMVHPYLRRRNAEEPVYYPSPSPQHGDKDELRKVLHKTLGVPLFQEQAMRIAI 671

Query: 701 LLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
             + +S  EA+ LRRAM   +    + K + + ++     G     A N F+ +  F  Y
Sbjct: 672 EAAKFSPEEANGLRRAMATFRNVGTIGKFESKMVNNMISRGYDPVFAKNCFDQIKGFGSY 731

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           GF +SHAA++A + Y ++W+K  +P  F    +  +        +  +DAR   +++   
Sbjct: 732 GFPESHAASFAQLVYVSSWLKHFHPDAFCCGLLNSQPMGFYAPAQIVRDARTNGVEVR-- 789

Query: 820 SVNTPCVDFKVGDN 833
           +V+   V F  G N
Sbjct: 790 AVD---VSFSFGQN 800


>gi|206600063|ref|YP_002242137.1| gp80 [Mycobacterium phage Konstantine]
 gi|206287151|gb|ACI12496.1| gp80 [Mycobacterium phage Konstantine]
          Length = 1098

 Score =  264 bits (674), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 236/931 (25%), Positives = 412/931 (44%), Gaps = 106/931 (11%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV    HS++S  +G  S+   + ++++    A+A+++  N+ S ++  ++   AGI+PI
Sbjct: 3   FVSFHTHSTFSYGDGFGSVEAHVQRVSSLGMSALALSEHGNVSSHVQLERECKKAGIKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +         K   Q KT       + +     EGY  L +LV++ Y+    K +V 
Sbjct: 63  FGIEAYFAPVSEAK-RGQLKT------HLTIFAMDEEGYHNLNKLVTKSYIDSYYKPTV- 114

Query: 131 ICLSWLQEIG-TEGLIMLTGGSS-------------GPI-DRAFFFNSSQVAEKRLLT-F 174
              SW   +    GL +L+G +              GP  D     +   +A +RL+  F
Sbjct: 115 ---SWENLVKHNAGLAVLSGCADSLLSCTLLGGKFLGPRRDHRNEKSRRPMAGRRLVQRF 171

Query: 175 KKLFGDRLYVNLQRHRGYDRY--RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
             +FGDR ++  QR  G  R      ++  ++    +PL+AT +  +     Y   +V+ 
Sbjct: 172 ADVFGDRFFLETQRFPGLGRTCAVNEELAAISRDTGIPLIATADVHY----PYPHQNVMQ 227

Query: 233 AVAHSTVVSQKDRPRVTPDH---------YLKNRSEMVSIF-------SDLPEALENTVE 276
              H+   + +     T D          Y ++  E++          ++   A+  T +
Sbjct: 228 TALHA---AHRGGTAATQDADWEYDILLTYPESDKEIIDDLVATGISETEARSAVRATAQ 284

Query: 277 IARRCSFILQVHAPILPRFIEKECDDIQKEE------ENELRNKAVAGLEVRLAQGAIAK 330
           +A+RC+  L    P+  RF   +   +  E          + +K   G + R  Q    K
Sbjct: 285 LAQRCTVELPKAKPL--RFPGVDLTAVHTESGRIAVTRKFMWDKLREGWKYRCKQRPELK 342

Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
              A++Y  RL +E+  I    F  YFLI +D + + K     VGP RGS AGS+  Y L
Sbjct: 343 -TRAKEYNDRLKYEMETIVSKDFMDYFLINSDLVSYTKDQGKGVGPARGSAAGSLVCYLL 401

Query: 391 TITDIDPLR---FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            IT+IDPL      ++FERF++  R  MPD D+DF  + R  +++   + YG E VA + 
Sbjct: 402 RITEIDPLYPVFDKMIFERFIDKTREDMPDIDLDFDPEARPVIVKRAISLYGPENVANVG 461

Query: 448 TFGSLQAKAALRDVGRALQMPYS------------------QVDRLCKLIPNDPAHPVSL 489
                +  +AL  + +A  +P S                  + D +  ++ +   +P   
Sbjct: 462 NHQGYRGVSALNAMAKAHALPRSVFKPIKDRIQDRTETDDRRDDTILDVLESYGENPEVA 521

Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
           + I     + + R   P     L+++  LEG       HAAG VI   P+ +   +Y   
Sbjct: 522 KVIEQHYWWTKDRKQVPGP---LQLATWLEGDCSGLGVHAAGFVISSEPIPETCAIYSRE 578

Query: 550 ------RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP- 602
                 R  + V  ++ +  E   L+K DFLGL T+ +++++ + +      +   L P 
Sbjct: 579 SGSGRNRKQVTVIPYDKRDAEYLNLLKNDFLGLLTVGVIRRAAEMVGMTMEDMYTLLPPE 638

Query: 603 ---FDDHETYHLL---TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI- 655
               D+ E+  ++        +GIFQ E    R  L  ++P     +  + +L RPGP  
Sbjct: 639 GDLRDNRESRPIIERFMNDDLVGIFQFEGGTTRSVLRDVKPTEFRHLADINALSRPGPKY 698

Query: 656 -DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
                 Y   K G E++  IHPL D  +  T G I+YQEQ+M I + L+G+ + +   +R
Sbjct: 699 GGQTDRYIAVKMGDEELEKIHPLFDQHVDWTYGQIVYQEQIMFILRDLAGFPIEKVLKVR 758

Query: 715 RAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
           + +GKK+ E +     E F +G + NG+ + +A+ ++  +   A Y FN SH+ +Y+ I+
Sbjct: 759 KIIGKKLGEHQFAALWEDFKNGCAANGVGEDVALRVWAGITSAAGYAFNTSHSYSYSWIA 818

Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---FCQDARQF--NIQIMPPSVNTPCVDF 828
           +Q+ W+K H+P  F AAS+    D  +   +     +D ++   +I ++P   N    ++
Sbjct: 819 WQSMWLKHHHPAAFFAASLEFNGDGKDDKPRRTALIKDTKEHGRDIAVLPLDPNASKTNW 878

Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
            V    I      I  +G  TA  IM    D
Sbjct: 879 SVESGAIRPGFVQIPKIGEATAADIMAWRDD 909


>gi|154247396|ref|YP_001418354.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2]
 gi|154161481|gb|ABS68697.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2]
          Length = 1116

 Score =  263 bits (673), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 185/641 (28%), Positives = 318/641 (49%), Gaps = 52/641 (8%)

Query: 207 HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFS 265
           H +PL+A N+ L  +  + +  D+L  +     +++  R  +   + +LK  +E+  +F 
Sbjct: 218 HGVPLLAVNDVLCATPRERDLQDILTCIREGIPIAEAGRRLQANAERHLKPAAEIARLFR 277

Query: 266 DLPEALENTVEIARRCSFILQ------VHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           D PEA+  +  +  R  F +          P+ P +  +        EE   R       
Sbjct: 278 DAPEAIAESGHLLARVEFSVGELKYEYPREPVPPGWTPQAW-----LEELTWRCA----- 327

Query: 320 EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
            VR   G   K        + L  EL +I++++++ YFL + D +++A+   I +  GRG
Sbjct: 328 RVRYPNGLTPK------VERLLRDELALISQLEYAPYFLTIHDIVRFAESRGI-LCQGRG 380

Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
           S A S   Y L IT +DP    LLF RF++ +R   PD D+DF  +RR+EVI+++  KYG
Sbjct: 381 SAANSAVCYVLGITAVDPADNDLLFARFISTERREPPDIDVDFEHERREEVIQHIYEKYG 440

Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             R   + T    + ++A+RDVG+AL +      RL           ++      DS+ R
Sbjct: 441 RHRAGIVATVIHYRPRSAIRDVGKALGLTEDITARLASTQWGSWGRDIA------DSQIR 494

Query: 500 EARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
           EA L  A+P + R ++++++L G  RH S H  G V+    L  +VP+     +D    +
Sbjct: 495 EAGLDPANPLIRRAVDLARRLMGAPRHLSQHVGGFVLARDRLDDMVPIGNAAMADRTFIE 554

Query: 558 FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKG 616
           ++   I+   L+K D L L  LT ++K+LD + A  G+   L+ +P    + Y +L    
Sbjct: 555 WDKDDIDALRLMKVDVLALGMLTCIRKALDLMRAHEGINFALADVPGAQEDVYAMLARGD 614

Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKI--V 672
           ++G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  R+NG+EK+   
Sbjct: 615 SIGVFQVESRAQINMLPRLRPREFYDLVIQVAIVRPGPIQGDMVHPYLRRRNGQEKVDYP 674

Query: 673 SIHPLIDP------MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-----KI 721
           S  P   P      +L++T GV ++QEQ M++A + + +S +EA+ LRRAM        I
Sbjct: 675 SPAPEHGPSDELRQVLEKTLGVPLFQEQAMKLAMVAARFSDAEANRLRRAMATFRNLGTI 734

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            E      ER ++     G  +  A   FE +  F  YGF +SHAA++A + Y ++++K 
Sbjct: 735 HEFEALMVERMVA----RGYERAFAQRCFEQIKGFGSYGFPESHAASFAKLVYISSYIKC 790

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            +P  F  A +  +        +  +DAR+ ++++    +N
Sbjct: 791 RHPAVFACALLNAQPMGFYAPAQIVRDAREHSVEVRAIDIN 831


>gi|217077906|ref|YP_002335624.1| DNA polymerase III subunit alpha [Thermosipho africanus TCF52B]
 gi|217037761|gb|ACJ76283.1| DNA polymerase III subunit alpha [Thermosipho africanus TCF52B]
          Length = 827

 Score =  258 bits (660), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 188/628 (29%), Positives = 318/628 (50%), Gaps = 88/628 (14%)

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
           Y++R++ E+++I    F  YF  V   ++ AKKNNI +GPGRGS  GS+ +Y L IT +D
Sbjct: 169 YKKRIEKEVSIIKEKNFVDYFFTVYKIVKIAKKNNIKIGPGRGSAVGSLVSYFLGITSVD 228

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           P+++ LLFERFLN  R   PD D+D    +R  +I  ++ ++ +  V  I TF S+  K 
Sbjct: 229 PIKYDLLFERFLNKGRNEPPDIDLDVEDTKRKLLIEKIREEFKY--VYYITTFSSIGEK- 285

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
                                          +L+ IA      E +++   +  LL    
Sbjct: 286 -------------------------------TLKKIA-----YENKISSDKIKYLL---- 305

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
               L  H S HAAGI+I    ++  VP+ +D        +++M+ + K G IKFD LGL
Sbjct: 306 ---NLPIHKSVHAAGIIISKEKIN--VPI-KD-----QTIEWDMESLHKIGYIKFDLLGL 354

Query: 577 KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
           KTLT+L +         ++    +   +D +T+HL++   T GIFQL+S+  ++ +  ++
Sbjct: 355 KTLTILSE---------LEKKFGVPRLNDQKTFHLISKGFTNGIFQLDSNLGKKVIRTIK 405

Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
           P  I+++   +SL RPGP+   +   ++K    KI +    +D +LK+T GV+I+QEQ+M
Sbjct: 406 PRNIKELSIALSLNRPGPLKAGI---DKKYANSKIENSSQKLD-VLKDTNGVLIFQEQIM 461

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           +IA   + ++  EADV R+A+ KK K+ M    ++ +       ++  I   + E + +F
Sbjct: 462 KIATEYANFTEEEADVFRKAVSKKDKQIMKPLLKK-LKDGLLKKLNPNIVNELIETIIEF 520

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
           ++Y FNKSHA AYA I+Y  ++ KTH+P +F    +  +    EKI      AR F  ++
Sbjct: 521 SEYAFNKSHAIAYAHITYYLSYFKTHFPKQFYKTILKYDSSKSEKI-ILELHARGF--KV 577

Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
           +PP++    ++  + +N     +  I G+     + I++   +KP+DSL++F  +  +  
Sbjct: 578 IPPNLTQNELE-NLENNIFEIPITLISGINEKIGKQIIK---NKPYDSLQNFLHK--NPN 631

Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
           +N  ++ESL+  G+ D    SR  LL  L  +          RT  +  +       F  
Sbjct: 632 INYSIIESLIKIGSFDYLSDSRRALLVKLKEL----------RTGINTKMLEISSSLFGK 681

Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFS 964
           K + E + +E S  R + E   +GF  S
Sbjct: 682 KFSKE-YKIEKSWERCDMEYTTVGFCIS 708


>gi|302384060|ref|YP_003819883.1| DNA polymerase III subunit alpha [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194688|gb|ADL02260.1| DNA polymerase III, alpha subunit [Brevundimonas subvibrioides ATCC
           15264]
          Length = 1126

 Score =  257 bits (656), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 180/662 (27%), Positives = 315/662 (47%), Gaps = 47/662 (7%)

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVT 249
           G DR R +++  LA    LPL+A N+ L+   +  +  DV+  +     +    R     
Sbjct: 205 GDDRRRLARLKTLAEQAGLPLLAVNDVLYHDVDQRDLQDVVTCIREGVTIEAAGRLLNAN 264

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILPRF-IEKECDD 302
            + +LK+ +EM  +F D PEA+  T     R  F L+         P+ P +  +   +D
Sbjct: 265 AERHLKSPAEMARLFRDAPEAVAQTGAFLSRVGFDLEQLRYQYPEEPVPPGWEPQAWLED 324

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
           +  +  N      V      L                 L  EL  I +  F+ YFL + D
Sbjct: 325 LTWKHANRCYPDGVPSKVSDL-----------------LTKELAFIQKAAFAPYFLTIYD 367

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            ++ A+   I +  GRGS A S   Y L IT ++P+   LLFERFL+ DR   PD D+DF
Sbjct: 368 IVRVARDKGI-LCQGRGSAANSAVCYVLGITSVNPMESDLLFERFLSEDRNEPPDIDVDF 426

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
             +RR+E+I+++  ++G  R     T    + K+A+R+VG+ L +      RL       
Sbjct: 427 EHERREEIIQHIYERHGRHRAGIAATVIRYRPKSAIREVGKVLGLTEDVTARLAG----- 481

Query: 483 PAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   S  +   +    +A L   +P + R + ++ +L    RH S H  G ++    L 
Sbjct: 482 -SQWGSWGSEMSERHVEQAGLDATNPMIARAVAMAMRLLNHPRHLSQHVGGFILTQDRLD 540

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599
           ++VP+      D    +++   I++  L+K D L L  LT ++K+ D + +  GV  DL+
Sbjct: 541 EMVPIGNAAMPDRTFIEWDKDDIDELRLMKVDVLALGMLTCIRKAFDLMREHSGVDHDLA 600

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DN 657
            +P DD   Y +L    ++G+FQ+ES      L  ++P  + D++  V++ RPGPI  D 
Sbjct: 601 SVPQDDPAVYEMLCQGDSIGVFQVESRAQINMLPRLKPRKLYDLVIQVAIVRPGPIQGDM 660

Query: 658 IVVYNNRKNGKEKIVSIHP-------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           +  Y  R++G E+     P        +  +L++T GV ++QEQ M++A + + ++  EA
Sbjct: 661 VHPYLRRRSGLEEPDYSQPGPAYPSDELKVVLEKTLGVPLFQEQAMKVAMVAAEFTDREA 720

Query: 711 DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
           + LR+AMG  +    +   + R +    + G     A   F+ +  F  YGF +SHAA++
Sbjct: 721 NGLRKAMGTFRGDGTLHTYEHRMVGRMIERGYDPAFAQRCFDQIKGFGSYGFPESHAASF 780

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
           A++ Y ++W+K H+P  F  A +  +        +  +DA++  ++  P  ++  C  + 
Sbjct: 781 ALLVYISSWIKRHHPAAFACALLNSQPMGFYAPAQIVRDAQEHGVETRP--IDVACSGWN 838

Query: 830 VG 831
            G
Sbjct: 839 NG 840


>gi|254419943|ref|ZP_05033667.1| DNA polymerase III, alpha subunit subfamily, putative [Brevundimonas
            sp. BAL3]
 gi|196186120|gb|EDX81096.1| DNA polymerase III, alpha subunit subfamily, putative [Brevundimonas
            sp. BAL3]
          Length = 1121

 Score =  257 bits (656), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 218/836 (26%), Positives = 373/836 (44%), Gaps = 51/836 (6%)

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRV 248
            +G DR R +++  +A   ++PL+A N+ L+    + +  DVL  +    T+ +   R   
Sbjct: 204  QGDDRRRLTRLKAIANVADVPLLAINDVLYHDPSERDLQDVLTCIREGVTIEAAGRRLLA 263

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + +LK  +EM  +F+D PEALE T  +  R  F L+      P    +E        +
Sbjct: 264  NAERHLKPPAEMARLFADAPEALEQTQLLLDRARFDLKDLTYNYP----QEPTPPGWSSQ 319

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L +      ++R   G  AK          L+ EL  I    F+ YFL + D ++ A 
Sbjct: 320  AYLEDLTWRHAQIRYPGGVSAK------VTDLLNKELAFIQIQGFAPYFLTIHDIVRVAN 373

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I +  GRGS A S   Y L IT +DP    LLFERFL+  R   PD D+DF  +RR+
Sbjct: 374  SKGI-LCQGRGSAANSAVCYVLGITCVDPAENDLLFERFLSDHRGEPPDIDVDFEHERRE 432

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+I+++ ++YG  R     T    + K+A+R+VG+ L +      RL        +   S
Sbjct: 433  EIIQHIYDRYGRHRAGIAATVIRYRPKSAIREVGKVLGLTEDVTARLAA------SQWGS 486

Query: 489  LQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              A   D    +A L  A+P + R + ++ +L G  RH S H  G ++    L +LVP+ 
Sbjct: 487  WGAEIGDCHVEQAGLDPANPMIGRAVAMASRLLGFPRHLSQHVGGFILTQDRLDELVPIG 546

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                 D    +++   I+   L+K D L L  LT ++K+L+ + A      +L  +P + 
Sbjct: 547  NAAMPDRTFIEWDKDDIDDLRLMKVDVLALGMLTCIRKALNLMHAHDDAAYELHTVPNEQ 606

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
             + Y +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  
Sbjct: 607  ADVYDMLCKGDSIGVFQVESRAQINMLPRLKPRTFYDLVIQVAIVRPGPIQGDMVHPYLR 666

Query: 664  RKNGKE--KIVSIHPLIDP-----MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            R+   E  +     P  DP     +L +T GV ++QEQ M++A + + ++  EA+ LR+A
Sbjct: 667  RRAKLEEPEYSKPAPPHDPDELKKVLHKTLGVPLFQEQAMKVAMVAAEFTPKEANGLRKA 726

Query: 717  MGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            MG  +    + K + R ++   + G  +  A   F+ +  F  YGF +SHAA++  + Y 
Sbjct: 727  MGTFRGDGTLWKYEGRMVNRMVERGYERDFAQRCFDQIKGFGSYGFPESHAASFGKLVYI 786

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----G 831
            ++++K  YP  F  A +  +        +  +DA++  ++I P  VN    D  +    G
Sbjct: 787  SSFIKCRYPAAFACALLNSQPMGFYAPAQIVRDAQEHGVEIRPIDVNLSDWDNTLEGPPG 846

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               +      I G     A+ ++ A + + F+ +E    R     L    +  L  A A 
Sbjct: 847  LLALRLGFRQIDGFREEWAKALVVARS-RSFEGVEALAGRA---SLPGSAMRKLADADAF 902

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL-EKFSVENSSV 950
               G  R + L ++  +   A        +  E     E      ++ L E  + +  + 
Sbjct: 903  RSIGMDRREALWAVRRLPDDAPLPLFAAADARE--LGEEDDARLPRMALGEHVAADYQTT 960

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            R              HP+ + +PI          E      G  +R A +V+ +Q+
Sbjct: 961  RLS---------LKAHPMAILRPIFAAENTLTCAELETRRSGAKVRTAGVVLVRQR 1007


>gi|254392772|ref|ZP_05007944.1| DNA polymerase III [Streptomyces clavuligerus ATCC 27064]
 gi|197706431|gb|EDY52243.1| DNA polymerase III [Streptomyces clavuligerus ATCC 27064]
          Length = 921

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 220/783 (28%), Positives = 374/783 (47%), Gaps = 53/783 (6%)

Query: 271  LENTVEIARRCSFILQVHAPIL------PRFIEKECDDIQKEEENE---LRNKAVAGLEV 321
            L  T E+A +C        P+       P F E +      E  +    LR +  AG+ V
Sbjct: 65   LGETAEVAAQCEV-----DPVRDLGLGRPHFPEPQVVGAGAEPGDGMRLLRRRCEAGMTV 119

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
            R     + +   A D   +L  EL VI ++ +  YFL VA  +   +   I V   RGSG
Sbjct: 120  R----GLDRDARALD---QLHHELAVIEQLGYEAYFLAVAQVVADTRAMGIRVA-ARGSG 171

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            AGS+  ++L I   +PL   LLFERFL+  R ++PD D+D    RR EV   +  ++G E
Sbjct: 172  AGSMVNHSLFIATANPLEHRLLFERFLSARRRTLPDIDLDVESHRRLEVYDRIFERFGSE 231

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
            RVA      + +A+ ALRD G AL +    VDR+ K  P+  A  +   A+A+    R+ 
Sbjct: 232  RVAVTGMPETYRARHALRDTGLALGIRPRTVDRIAKSFPHIRACDIR-SALAELPELRQL 290

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
                     L E+++ L+ L R  + H  G+++    L   +P+ +      P+ Q +  
Sbjct: 291  ARHAGRFGPLWELAEGLDALPRGYAMHPCGVILSSTSLLDRLPV-QPTPGGYPMVQADKH 349

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSL---IPFDDHETYHLLTTKGT 617
             +E  GL+K D LG++  + +  ++ +     G  +DL     +   D +T+ L+     
Sbjct: 350  DVEDMGLVKLDVLGVRMQSAMAHAVAEIRRTTGRHIDLDSPDHVDLGDEQTFALIRRGQV 409

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIH 675
            LG FQ+ES G++  +  +QP  ++DIIA +SL+RPGP+   +   +   ++G E     H
Sbjct: 410  LGCFQIESPGVQDLIARLQPRHLQDIIADISLFRPGPVKGGMPARFIAARHGAETPRYPH 469

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            P + P++ +T GV+I+ EQ+M+I ++L+G   + ADV RRA+     E + + +  F   
Sbjct: 470  PDLVPIMDDTYGVVIWHEQIMEILRVLTGCDRAAADVARRALAD--TERLPRVEAWFRRC 527

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A++ G +  +   +++++ +F  YGF ++HA A+AV + Q+AW+KTHYP  F A    L+
Sbjct: 528  AAERGYTPAVIGEVWDIIKEFGAYGFCRAHAVAFAVPAVQSAWLKTHYPAAFYAG--LLQ 585

Query: 796  MD-NVEKIKKFCQDARQFNIQIMPPSVN----TPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             D  +   +   QDA+QF + I+P  +N       V+       +  +L+ I+G+ T  +
Sbjct: 586  HDPGMWAPRVLVQDAKQFGVTILPVDINHSRSAHSVEQTADGWGVRLALSTIRGITTAES 645

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQSLDNIQ 909
              I    A +P+  L+D   R    + +  + + L+  GAL   G  +R  LL     + 
Sbjct: 646  ARI---EAAQPYTGLQDLWLRA---RPSLPLAQRLITIGALGPQGRLTRRDLLLQATELH 699

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            + A    +NRT     +   ++        L + +  +       E  VL    S H L+
Sbjct: 700  RSA----RNRTTADGQLPLGDETHAGAPAGLPEMTGRDV---LNAEIDVLSIDVSRHLLE 752

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
             +  +L ++G        A  RG  + +A +  S Q      G R+ +VT  + +   + 
Sbjct: 753  HHHRLLAELGATDAHHLQAMHRGQQVLVAGVRASTQTPPVPSGKRVIFVTLEDGSGLVDV 812

Query: 1030 NFF 1032
             FF
Sbjct: 813  AFF 815


>gi|39939077|ref|NP_950843.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
 gi|39722186|dbj|BAD04676.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
          Length = 625

 Score =  254 bits (650), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 196/666 (29%), Positives = 336/666 (50%), Gaps = 67/666 (10%)

Query: 16  VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75
           + S YSLL+   SL  ++ K   +    +A++D +NL+    F +      I+ I+G ++
Sbjct: 7   LQSFYSLLQSLNSLETLVQKAKENDYDFVALSD-DNLYGMPTFLKLCHNYQIKSILGLKI 65

Query: 76  DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
                 N    NQ       + ++++     +G + LI++ + +    + +++ +I L+ 
Sbjct: 66  ------NFLHKNQ-------LATLLIYAKNDQGIKNLIQISTII----KNEETPQITLNQ 108

Query: 136 LQEIGTEGLIMLTGGSSGPIDRAFFFNSS----QVAEKRLLTFKKLFGDRLYVNLQRHRG 191
           +  +G + L  L  G +   D  FF +      Q+A +     +K+F D L + +     
Sbjct: 109 IAHLGKD-LFALIPGENPFFDDMFFRDQKDKFFQIANQ----LQKIF-DELVLGISYQNS 162

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
           +       ++  A   ++P V  N + + + +    + +L  + +     Q D   +T D
Sbjct: 163 FLELLSENIIDFANHFQIPYVPINKTCYDTFQAQPTYQILAQMENKKNDDQTDLSFLTKD 222

Query: 252 HY--LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP---ILPRFIEKECDDIQKE 306
           ++    N     ++F+ L + +          S   Q + P   +LP F+    D +Q +
Sbjct: 223 NFDSAYNAQTHKAMFAYLKKLI---------FSIKYQNYLPQKMLLPSFV----DFLQPQ 269

Query: 307 E---ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
           +   +  L+  +  GL     Q    K      Y+QRLD EL +IA M++  YFLIV D 
Sbjct: 270 KITAKEYLKQISYEGLR----QYIDFKNPKYTKYQQRLDQELQIIADMEYDNYFLIVGDV 325

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           +++AKK  I VGPGRGS +GS+  + L IT+IDPL++ L+FERFLNP R +MPD D+DF 
Sbjct: 326 VRYAKKQGILVGPGRGSSSGSLVCFCLQITEIDPLQYDLIFERFLNPQRKTMPDIDLDFP 385

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
           ++ RD +I+YV  KYG + VA IITFG   ++ A+             ++ L K +P   
Sbjct: 386 ENTRDLIIQYVCQKYGTKHVASIITFGRFVSQKAI-------------INELVKFMPTVK 432

Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                 + A  D     +    D  + +LL ++  +EG+ R   TH AGI++   PL Q+
Sbjct: 433 EFQTKRVLAYLDKKSTYQKETLDLQMKKLLTMASYIEGIPRFTGTHPAGIILSQMPLDQI 492

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
           +P+ +   ++L  TQ+   ++E  GL+K DFLGL++LTL+ K +  + +      L  IP
Sbjct: 493 IPLQKGTHNNLQQTQWEASFLESIGLLKIDFLGLRSLTLMNKMVLAIQKTNPHFGLFKIP 552

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +D +T+ LL    T+GIFQLES   +  L+ M P   ED+IAL++L RPGPID+  ++ 
Sbjct: 553 LNDTKTFELLQQGKTIGIFQLESYNAKIFLQKMMPQKFEDLIALLALNRPGPIDSFNMFL 612

Query: 663 NRKNGK 668
             ++ K
Sbjct: 613 KNRHQK 618


>gi|222833094|gb|EEE71571.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  254 bits (649), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 163/497 (32%), Positives = 253/497 (50%), Gaps = 40/497 (8%)

Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
           YFL V D +++A+  +I +  GRGS A SV  + L IT +DP   +LL  RF++ +R   
Sbjct: 7   YFLTVHDIVRFARSQDI-LCQGRGSAANSVVCFCLGITAVDPTLQTLLIARFISRERSEP 65

Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
           PD D+DF   RR+ VI+Y+  KYG  R A        + + ALRD G+AL +    +D +
Sbjct: 66  PDIDVDFEHARRETVIQYIYEKYGRGRAALTAVVSCWRTRGALRDAGKALGVDAVLIDAM 125

Query: 476 CKLI----------------PNDPA----------HPVSLQAIADDSRFREARLADPSVD 509
            +                  P+DPA               + + DD      +L+     
Sbjct: 126 ARQHHWFSDAEDQAAEPEPEPDDPALGWVRSKLLRLARLRERLGDDC----PQLSPQRAR 181

Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
             LE++ +L    RH S H  G V+ D PL++LVP+         V Q++   ++   L+
Sbjct: 182 LWLELALQLRDSPRHLSQHVGGFVLTDGPLTRLVPVEPAAMEGRSVIQWDKDDLDTMNLL 241

Query: 570 KFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
           K D L L  LT+L+ SL   A  RG + +L+ IP +D  TY ++    T+G FQ+ES   
Sbjct: 242 KVDVLALGMLTVLRGSLHARAALRGPRWELADIPKEDAATYDMICRADTVGTFQIESRAQ 301

Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY------NNRKNGKEKIVSIHPLIDPML 682
              L  ++P    D++  V++ RPGPI   +V+        R+ G E ++   P ++  L
Sbjct: 302 MSMLPRLRPRVFYDLVVEVAIVRPGPIQGGMVHPYLQARERRRQGGELVLE-KPALEKAL 360

Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER-FISGASKNGI 741
           K T GV I+QEQVMQIA + + +S  +AD LRR+M    ++    + ER  I G   NG 
Sbjct: 361 KRTLGVPIFQEQVMQIAMIAANFSAGDADELRRSMAAWRRKGGVHRFERPLIDGMLANGY 420

Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
           S   A  IF  +  F +YGF +SHA ++A+++Y +AW+K H P  FL A +  +      
Sbjct: 421 SAEFAQAIFRQMLGFGEYGFPESHAYSFAMLAYASAWLKRHEPACFLMALLNAQPMGFYT 480

Query: 802 IKKFCQDARQFNIQIMP 818
             +  QDAR+  ++++P
Sbjct: 481 PSQLIQDARRHGVRVLP 497


>gi|89889523|ref|ZP_01201034.1| DNA polymerase III alpha subunit [Flavobacteria bacterium BBFL7]
 gi|89517796|gb|EAS20452.1| DNA  polymerase III alpha subunit [Flavobacteria bacterium BBFL7]
          Length = 1040

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 197/714 (27%), Positives = 343/714 (48%), Gaps = 76/714 (10%)

Query: 194 RYRESQVV--------QLAYTHELPL----VATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           R+RES+ +        +L +TH + +    V      F S+ D+ AH +L  +  + ++S
Sbjct: 125 RFRESEYIGISTTTLRKLPFTHYVKMLDKMVVLQTVSFRSKRDFNAHRLLRCIDLNILLS 184

Query: 242 Q-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-----QVHAPILPRF 295
           Q  +  +      + + S +   F + P  ++NT  +  +C         Q++A      
Sbjct: 185 QLPESQQGNASDQMTSLSLLKKAFEEYPIIIQNTTRLLEQCHVNFNFENAQLNANQQVFT 244

Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
             KE D ++      LR  A  G+E R   G I          +R++ E+ ++ +  F  
Sbjct: 245 TSKEADYLK------LRKLAYDGIEHRY--GDIKD---MTVVIERIEKEIGIVNKKGFVA 293

Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
           YFLI     ++A+        GRGSGA S+ AY L IT++DP+   L FERF+N  R S 
Sbjct: 294 YFLINWRICEYARSKGY-FYVGRGSGANSILAYLLQITEVDPIELDLYFERFINDYRTSP 352

Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
           PDFDIDF  D R+++ R++ N +  E VA + T+ + Q +A +R++G+   +P + +D L
Sbjct: 353 PDFDIDFSWDDREDITRFIFNTF--ENVALLATYNTFQYRAVVRELGKVFGLPKADIDML 410

Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                RF++ +L D     +L+ S  ++G+  + S HA GI+I 
Sbjct: 411 TT------------------GRFQQDQL-DQMHQLVLKYSHLVKGMPNYTSIHAGGILIT 451

Query: 536 DRPL-----SQLVPM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
           ++P+     + L P  YR V       QF+M   E AG+ KFD L  + L  ++ +++ +
Sbjct: 452 EKPIHYYSATSLPPKGYRTV-------QFDMHIAEDAGIHKFDILAQRGLGKIRDTIEII 504

Query: 590 AQRGVKVDLSLIPFD------DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
                   ++ +  D      D E  ++++    +G F +ES  MR  L  +  +    +
Sbjct: 505 KYNQPDAIVANLHTDVKNFMQDPEINNMISQAKCIGCFYIESPAMRMLLSKLATNDYIGL 564

Query: 644 IALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
           +A  S+ RPG   + ++  +  R    EK    HP++  ++ ET G+++YQE V+++A  
Sbjct: 565 VAASSVIRPGVAQSGMMREFILRTRYPEKRKEAHPIMQEIMPETYGIMVYQEDVIKVAHY 624

Query: 702 LSGYSLSEADVLRRAMGKKI--KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            +   L+EADVLRR M  K   +EE  K ++++       G        I+  +  FA Y
Sbjct: 625 YAKLDLAEADVLRRGMSGKYRSREEFQKVEQKYFQNCIDIGHDPEQTQEIWNQIKSFAGY 684

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            F K H+A+YAV SYQ+ ++K ++P+E++ A++        + + +  +A++    I  P
Sbjct: 685 AFAKGHSASYAVESYQSLYLKKYFPLEYMVATLN-NGGGFYRPELYVHEAKKCGAIIESP 743

Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRV 872
            VN   +   +    IY   + +K +   T   ++EA   D  F SLEDF  RV
Sbjct: 744 CVNHSDIANIIKGTSIYLGYSYLKELEKKTMVRLIEARQHDGLFKSLEDFIDRV 797


>gi|323351877|ref|ZP_08087528.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis VMC66]
 gi|322121934|gb|EFX93666.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis VMC66]
          Length = 583

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 162/503 (32%), Positives = 255/503 (50%), Gaps = 31/503 (6%)

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQR 592
            + D  L+  +P+      D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L + 
Sbjct: 1    MSDNDLTDQIPL--KYGEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKY 58

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             V ++++ I  +D  T  L     T GIFQ E  G    L+ +QP C E+++A  SL RP
Sbjct: 59   EVDIEIAEIDLEDAGTLKLFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRP 118

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            G  D I  +  RK+G E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+
Sbjct: 119  GASDYIDNFVKRKHGLEQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADI 178

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK   EM + +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +
Sbjct: 179  LRRAMGKKNAAEMHRMQEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSAL 238

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            ++Q A+ K HYP  F    +     +      +  DA  F+ +  P S+N      K  D
Sbjct: 239  AFQLAFFKAHYPDVFFDVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQD 292

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             +I+  L  IKG+    A  I+E   +  F  +EDF  R+        +L  L+  G  D
Sbjct: 293  KKIFLGLKNIKGLPRDLAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFD 352

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--V 950
             F  +R ++L +L N+                 +FA E G+     T      ++ S   
Sbjct: 353  SFEKNRQKILANLPNL----------------FVFADELGSLFADTTYSWTEAQDFSDAE 396

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            +FE EQ ++G   S HPL      L K   + +         +  R+ A V S +  +T+
Sbjct: 397  KFELEQSIIGVGLSDHPL----VKLAKEADQPFSWISELTENSRARILAEVQSIKTIRTK 452

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
            KG  + ++  S+  K+ +   FP
Sbjct: 453  KGENMAFLQVSDTKKKLDVTLFP 475


>gi|291037375|ref|ZP_06568339.1| DNA polymerase III, alpha subunit [Gluconacetobacter xylinus NBRC
           3288]
          Length = 977

 Score =  251 bits (640), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 192/664 (28%), Positives = 308/664 (46%), Gaps = 73/664 (10%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S  +  LQV + +S L GA S   + ++  A    A+ I D N+L   ++    A   GI
Sbjct: 2   SMPYAELQVTTYFSFLRGASSPIELFEQAKALGIEALGICDRNSLAGMVQAHVAAKETGI 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           + ++GC+LD+                     +++  +    Y RL  L++ +     GK 
Sbjct: 62  RLVVGCRLDL----------------ADFAPVLVYPTDRAAYGRLCRLLT-LGKARAGKG 104

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              +    L   G   L++L   ++           +     +L   K  F DR Y+ L 
Sbjct: 105 QCHLLWEDLVAWGDGLLVILLPDTA-----------NDACALQLRKLKDAFADRAYMALT 153

Query: 188 -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R R  D+ R  ++  LA+   +P VATN+ LF + +     DV+  + + T + +    
Sbjct: 154 LRRRPNDQMRLYELANLAHQARVPAVATNDVLFHTHDRRILQDVVTCIRNHTTIDEAGFA 213

Query: 247 RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           R    D YLK  +EM  +FS  PEA+  T++I  RC F L               DD+  
Sbjct: 214 RERHADRYLKPPAEMARLFSRYPEAVARTMDIVERCRFSL---------------DDLAY 258

Query: 306 EEENELR------NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
           +  +E+        +A+  L  + A  A  +G    + R+ LD EL +I RM ++ YFL 
Sbjct: 259 QYPDEVSVPGQTPQQALEALTWKGAAAAYPEGI-PPEVRKTLDHELALIGRMDYAPYFLT 317

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V   +++A+  +I +  GRGS A S   Y L IT IDP R SLLFERF++ +R   PD D
Sbjct: 318 VHSIVRYARSQDI-LCQGRGSAANSAVCYVLGITAIDPARTSLLFERFVSEERREPPDID 376

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           +DF   RR+++I+++   YG    A        +AK ALRDVG+ + +            
Sbjct: 377 VDFEHARREQIIQWIYGHYGRNHAALTAVVTRYRAKGALRDVGKVMGL------------ 424

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVD------RL-LEISQKLEGLYRHASTHAAGI 532
           P D    +S Q      +  E  L +  +D      RL L++++ L G+ RH S H  G 
Sbjct: 425 PEDLIRTLSGQIWGWGRKLDEGALDETGIDMSDRRIRLTLDLARCLIGVPRHLSQHPGGF 484

Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
           V+    L +LVP+         + +++   I+    +K D L L  LT ++K LD LA+ 
Sbjct: 485 VLTHDRLDELVPIEPAAMDARQIIEWDKDDIDVLKFMKVDVLALGMLTCMKKGLDLLAEH 544

Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
           +G +  L  IP +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ R
Sbjct: 545 KGQRYTLQTIPAEDPRTYAMIRKADTIGVFQIESRAQMSMLPRLRPRVFYDLVIEVAIVR 604

Query: 652 PGPI 655
           PGPI
Sbjct: 605 PGPI 608


>gi|148530008|gb|ABQ82210.1| DNA polymerase III alpha chain [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 353

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 150/364 (41%), Positives = 203/364 (55%), Gaps = 19/364 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL+VHS+YSL +GA+ +  I       + PA+AITDT NLF ALEFSQ     G+QPI
Sbjct: 6   FVHLRVHSAYSLSQGAIRIPEIASLAQDMRMPAVAITDTGNLFGALEFSQYCSGKGVQPI 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IGCQ+ +  +++       K   P  P +VLL     G   L  L S+ +L     +   
Sbjct: 66  IGCQVGLPPRND-------KPGAPAEP-VVLLAQDETGLMNLQYLSSQGFLTGDTAEPT- 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           + L  L E   EGLI+LTGG+ GP+ R           + L      FG+RL V L RH 
Sbjct: 117 VTLDVLCE-RAEGLILLTGGTRGPLFRMLADGQQDEVAQWLERLHAAFGERLAVELHRHG 175

Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +  +  ++ LA    LPLVATN   F   E YEAHD L+ +A    ++++DR RVT
Sbjct: 176 LPVQKAVKPGMIALADRMGLPLVATNECFFPRPEMYEAHDALLCIAQGRTMAERDRWRVT 235

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK--EE 307
           P+H+ K  + M  +F+DLPEA + T+ IARRC+  ++   P+LP      C  +Q    E
Sbjct: 236 PEHWFKPPAMMRDLFADLPEACDYTLAIARRCAVRVETRKPLLP-----VCPKVQPGATE 290

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
           E  LR  A  GL  RLA+  +      Q YR RL FEL++IA+M F GYF+IVADFIQWA
Sbjct: 291 EQTLRAMAEDGLARRLARMDMDDATR-QVYRDRLTFELDIIAKMGFPGYFMIVADFIQWA 349

Query: 368 KKNN 371
           K ++
Sbjct: 350 KAHD 353


>gi|156564220|ref|YP_001429761.1| DNA polymerase III alpha subunit [Bacillus phage 0305phi8-36]
 gi|154622917|gb|ABS83797.1| DNA polymerase III alpha subunit [Bacillus phage 0305phi8-36]
          Length = 1348

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 214/873 (24%), Positives = 386/873 (44%), Gaps = 142/873 (16%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           +K    VH+ +HS +S+ +          +        I +TD  N+   ++F +     
Sbjct: 33  KKPRRIVHIHMHSIFSIADAMCKPKETAKRAKQLGIDTIILTDHGNISGVIQFKKACEEE 92

Query: 66  GIQPIIGCQLDIDMQDN--LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS--RMYL 121
           GI+ I  C++  + +D   +   +  +  +     I ++    +G+  L  L+S    Y+
Sbjct: 93  GIKFIPACEM-YEAKDRTVISKADCARGNWNASRHITMIPVNNQGWADLQHLISDANQYV 151

Query: 122 LDQGKQSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
               K   R  +++++  G  + +I  TG  +    +       + A++ +L    LF  
Sbjct: 152 YYAPKPLPRTDMNYIESNGLGKNIIATTGCLASETSQLILEGKEEEAKQEILRRNNLFY- 210

Query: 181 RLYVNLQRHRGYDRYRESQVVQLAYTH-----ELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           R ++ +Q +      RE ++V  A         +PLV   +  ++  +D +AH  L+A++
Sbjct: 211 RYFLEIQDNGS----REQEIVNEALIRISNDTGVPLVYAKDVHYVKPDDKDAHHALVAIS 266

Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIF--SDLPE-ALENTVEIARRCSFILQVHAPIL 292
               V        T  ++L +  E+      +++P  A+ENT  IA  C+  ++++  ++
Sbjct: 267 RKQSVYDCAPYSGTNTYHLASADEVYQWADENNVPHSAIENTCWIADNCNVDIELNKDLM 326

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY--HAQDYRQRLDFELNVIAR 350
           P F    C D    + + L+      L +   +     GY  + ++Y +R++ EL ++  
Sbjct: 327 PEF--PYCPD-GHTDASYLKKLLFDNL-IGYVEFVEVNGYKINVKEYIERVEHELRIVTM 382

Query: 351 MKFSGYFLIVADFI----------------QW---------------------------- 366
            K+  YFL++ D +                +W                            
Sbjct: 383 KKYPSYFLLLWDILLWASDRNKWLSYPQNKEWIEAEVHEVVVKVVKDKQTGKKKKVKRKV 442

Query: 367 -----AKKNNIP---VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
                AK    P   VGPGRGS AGS+ A+ L IT +DP+++ L+FERFL+P R S PD 
Sbjct: 443 VSKPNAKYAFYPEFLVGPGRGSAAGSMMAFLLDITRLDPIQYGLMFERFLSPYRDSPPDI 502

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL-------------------------- 452
           D+DF  D  D ++ +V  +YG ++ AQ++TF                             
Sbjct: 503 DVDFPGDNHDMLLDFVAQRYGRDKTAQVLTFTKFKLKSSIDKICKALEKRDPDNPKKVLE 562

Query: 453 -------QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV-------SLQAIADDSR- 497
                  + KA L++ G   +MP  Q D   K +     HP        SL    + S+ 
Sbjct: 563 YGYKVADEVKATLKETGDQGKMP-DQKDCTYKDMMEISVHPENYARYGGSLSKFVEASKQ 621

Query: 498 FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV---RSDLP 554
           FR+     P ++  L    K+EG    +  HA G++I  RPL    P  +     ++ LP
Sbjct: 622 FRKLMTKYPELNDYL---GKIEGAIDTSGIHAGGVIISKRPLDLDCPTIKPTEKSKAVLP 678

Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLT 613
           +T ++    E  GL+K D L   TL ++  ++D + Q  G ++D+  I  DD + + ++ 
Sbjct: 679 ITMWDYPDCESVGLLKMDLLRTSTLRIISTTIDLIEQSTGKRIDIYSIGRDDPKAFEVMA 738

Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV----------VYNN 663
              T G+FQ+   G+      + P   E++I +++L+RPGP+D  +          V N 
Sbjct: 739 KGETHGLFQVAGRGITAYTRQVAPAKQEEVIDILALFRPGPLDATLENGNTIAQQYVLNG 798

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            +  KE +  +HP +  +LK+++G ++YQEQ+M + Q+++GY+L  AD  RR +GKK  +
Sbjct: 799 SRKPKEYLSDVHPDMRALLKQSRGQMVYQEQIMGLVQVIAGYNLGHADNFRRVIGKKKID 858

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           EM K  + F+ G       K +      LLAK+
Sbjct: 859 EMPKLYDEFMYG------HKYVIEKFENLLAKY 885



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/276 (31%), Positives = 139/276 (50%), Gaps = 34/276 (12%)

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK K+ MD  +   I GA  N   ++ A N+F  +A FA Y FNKSH+A YA  +YQTAW
Sbjct: 923  KKNKKAMDSHE---IVGAVTNNYKESFAKNLFSQMAAFAGYAFNKSHSACYADETYQTAW 979

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K HYPVEF+ A +++   + EK  +  ++A++  I+I+PP +N    DF      I + 
Sbjct: 980  LKVHYPVEFMTALLSVRGGDKEKTMENLKEAKRMGIRILPPDINKSYADFSPDAGAIRFG 1039

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRV----------DSKKLNRRVLESLVF 887
            + +I GVG    R I+ E   +  +   +DF +R            S  +NR V+ +L+ 
Sbjct: 1040 IFSIAGVGEKAVRAIVRERDNNGDYKDFDDFYTRCVVKFVKTEEQKSNPINRGVIRTLIE 1099

Query: 888  AGALDCFGYSRMQLLQSLD-NIQKYAQW--VEKN---RTNKHENIFAHEKGTFSDKITLE 941
            AG  D F  +R  LL   +  ++K   W  +E++      K  + FA++   F++K  L+
Sbjct: 1100 AGCFDTFERNRYNLLNHYNFTLRKDKVWNGLEEDLLTSKEKANHSFAYDPAQFNEKRMLQ 1159

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLD--VYKPIL 975
                         E  ++G Y SG P +   + P+L
Sbjct: 1160 M------------EHELIGIYVSGSPYEDLPFTPLL 1183


>gi|29567055|ref|NP_818618.1| gp80 [Mycobacterium phage Barnyard]
 gi|29425780|gb|AAN02134.1| gp80 [Mycobacterium phage Barnyard]
          Length = 1111

 Score =  245 bits (626), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 240/966 (24%), Positives = 415/966 (42%), Gaps = 154/966 (15%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAAD-QQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           FV    H+++S  + AL + +I    A +    A+  ++  N+    +F ++    GI+P
Sbjct: 3   FVSFHTHNTFSYAD-ALGMPSIHAARAEELGMWALGTSNHGNVNDHAQFERECKERGIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I GC++         +  + KT   T   + +      GY+ L  ++++ Y+      +V
Sbjct: 62  IFGCEIYFS-----PVGEEDKTRRKT--HLTIFAMNEIGYRNLNRIITQSYVDAYQWPTV 114

Query: 130 RICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNS------SQV-------AEKRLLTFK 175
               SW   E   EG+++L+G +   +              S V       A +++  + 
Sbjct: 115 ----SWENLEANHEGILVLSGCADSLLSCTLLGGKYLGEQRSHVTDDDMDNARRQIQRYL 170

Query: 176 KLFGDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +FG+R  + +QR   YDR R     + +L+    +PLVAT +  +   E     + L A
Sbjct: 171 DVFGNRFALEVQRFPHYDRTRALNPAIAELSRDTGVPLVATADVHYPFPE----QNKLQA 226

Query: 234 VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP----------------EALENTVEI 277
           + H+     K  P    +   ++ + +    SD                  +A++ T  +
Sbjct: 227 LLHA--ARWKSSPDFAAEASWEHSANLTYPLSDKEIHDDLVATGLDSADAWKAIQYTSIL 284

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
           A RC+  L    P+  RF+   CD     ++ +L  +   G + R+AQ        A+ Y
Sbjct: 285 AERCTVELPKAKPL--RFV---CDKGLTAKQ-QLSREIAKGWKYRVAQRPDMARRKAE-Y 337

Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            +RL +E  +I    F  YFL+++D ++ AK  +I VGP RGS A S+ +Y L IT+IDP
Sbjct: 338 VKRLQYEFKIITDKDFGDYFLVISDLVRRAKDKSIDVGPARGSAAASLISYLLRITEIDP 397

Query: 398 LR---FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           L      ++FERF++P R   PD D+DF  ++R E+    +N YG E VA +        
Sbjct: 398 LHPLFNKMVFERFIDPFRSDYPDIDLDFDDEKRWEIELDAKNLYGPENVASVANNTGYHG 457

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR------FREARLADPSV 508
           K  L+DV RA ++P      + K          +++   DD R        E+    P +
Sbjct: 458 KNTLKDVARAYKLPLETFKAIAKR--------TTVRVETDDKRNDSISDVLESYATHPEI 509

Query: 509 DRLLEI------------SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY------RDVR 550
             L+E             S   +G    +S HA G VI   P+  +  +Y         +
Sbjct: 510 AGLIEAHADKLAMAVALESGNGDGNLHSSSVHACGFVIASDPIPDVCAIYLKDKGSGSKK 569

Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS---LIPFDDHE 607
           + + V  ++ +  E  G++K DFLG  T+  +      L ++  +V+L    L  + D++
Sbjct: 570 TKVQVIPYDKRDAESLGMLKVDFLGSATMGAIG-----LMRKWSRVELEELYLSIYKDYD 624

Query: 608 TY--------------------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            +                                  +GI Q E    RQ    +QP   +
Sbjct: 625 RWIRVQKRIKESGGKRVGFTANRFDNILKRFRNDDVVGIMQFEGGTTRQVCRNVQPVDFD 684

Query: 642 DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL-IDPMLKETQGVIIYQEQVMQI 698
           ++ A  +L RPGP        Y   KNG++    IHP   D  +  T G I+YQEQ+M I
Sbjct: 685 ELAACTALSRPGPYYGGQYTDYVAVKNGEKDWARIHPKGFDRHVAFTFGQIVYQEQIMWI 744

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKN-GISKTIAVNIFELLAKF 756
            + L+G+  +E   +R+ +GKK+ E + +  K+ FI G ++  G+    A+ +F  +   
Sbjct: 745 LRDLAGFDNAEVLRVRKIIGKKLGEFQFEAIKQAFIDGCAQTCGVDPDTALRVFGAIRTA 804

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---FCQDARQFN 813
           A Y FN +HA +YA+I+Y     K  +  EF A+++    D  ++I +     QDA    
Sbjct: 805 AGYAFNIAHAYSYALIAYWQMGFKMDHTTEFFASTLYKNGDGKKEIPRRTAVLQDAEAHR 864

Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAA--------------IKGVGTTTARHIMEASAD 859
           I I    +N    ++     R YY  +A              I G+   TA+ I++   +
Sbjct: 865 IGIGGWDLNLSGANW-----RPYYDHSAHSRNLGTVMPGFQQIPGIAEATAKAILDWRDN 919

Query: 860 KPFDSL 865
            P+  +
Sbjct: 920 LPWQDI 925


>gi|75758944|ref|ZP_00739054.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74493545|gb|EAO56651.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 420

 Score =  244 bits (622), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 135/377 (35%), Positives = 221/377 (58%), Gaps = 11/377 (2%)

Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
           RL E++ ++E + R    HA G++I   P++  V + R  +    +  ++   +E  G I
Sbjct: 22  RLFELALEVESMPRTQGIHACGMLITAEPITNEVALVRG-KGGESIAGYDGPTLEAKGYI 80

Query: 570 KFDFLGLKTLTLLQKSLDFLAQR-GVKVDL-SLIPFDDHETYHLLTTKGTLGIFQLESSG 627
           KFDFLGLK L++++     +  R G  +D+ +LIP +D +T+ ++    T G+FQ+ES G
Sbjct: 81  KFDFLGLKNLSVVELCRRMVEDRYGYLIDVDNLIP-EDQKTFDMIQRGETDGVFQIESDG 139

Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
           M++   G+     E +IA VSLYRPGP+D I  Y    NG E++  +HP  D + + T  
Sbjct: 140 MKKMFMGLNKVDFETLIAGVSLYRPGPMDYIPKYTALANGHEEVPQVHPAFDEITRNTFS 199

Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
           ++IYQEQVMQ++  ++GYS  EADVLR+A+GKK  E ++   E   +  ++N +   +A 
Sbjct: 200 IMIYQEQVMQVSTEMAGYSKGEADVLRKAVGKKKIEILEPALEELHNRLTQNNVPTQVAT 259

Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
            I + +  FA Y FN+SHAA YA I+YQTA++K +YP+E++ A + +     +K+ K  +
Sbjct: 260 KICDDIRPFAGYAFNRSHAACYAYIAYQTAYLKANYPLEYMTALLQVFYTEEDKVVKLVK 319

Query: 808 DARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIME------ASADK 860
             R   I+++PP +N   + F + G+N I + L AIKG+G  T   I+E      A A +
Sbjct: 320 VIRDMGIEVLPPDINRSEIGFTIEGENAIRFGLGAIKGLGEATLEAIIEERKPRMAPAVR 379

Query: 861 PFDSLEDFCSRVDSKKL 877
             D LE   S+ ++ ++
Sbjct: 380 DEDGLETVISKEEADEI 396


>gi|285808454|gb|ADC35979.1| error-prone DNA polymerase [uncultured bacterium 148]
          Length = 1642

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 168/569 (29%), Positives = 276/569 (48%), Gaps = 75/569 (13%)

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
            +R LE   +++G  RH S H+ G+++   PL  + P+ R    D  V QF+ + +E   L
Sbjct: 1000 ERWLEFCARIDGFPRHLSIHSGGMLVTAAPLIDIAPIERATMVDRVVVQFDKRDVETLKL 1059

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            IK D LGL  L  + ++L  +    GV +DL  +P D  E + +L T  T+G+FQ+ES  
Sbjct: 1060 IKLDLLGLGMLAAMDETLQLIEHDCGVCLDLDRLPEDVSEVFAMLQTADTVGVFQVESRA 1119

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
              Q L   +P  ++D++  V++ RPGPI    V  Y  RK G E +  +HP ++P+LK++
Sbjct: 1120 QMQTLPKSRPHNLDDLVVEVAIIRPGPIQGNAVHPYLRRKQGLEPVEYLHPSLEPVLKDS 1179

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKN-GISK 743
             GVI+YQEQVM+IA  ++G+S +E+D  RRAMG  +   EM+K  +RF+ GA +  G++ 
Sbjct: 1180 MGVILYQEQVMRIAIEVAGFSPAESDGFRRAMGTWRSSREMEKLHQRFVDGAMRQPGMTI 1239

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +A  +F  +A FA +GF KSHAAA+A  +Y+++++K  YP +FL   +  +      ++
Sbjct: 1240 EVAEELFRQVAAFASFGFAKSHAAAFARTAYESSFLKLFYPAQFLVGLINAQPMGFYPVE 1299

Query: 804  KFCQDARQFNIQIMPPSVN----------------------------------------- 822
                DA++  + ++P  VN                                         
Sbjct: 1300 VLVNDAKRHGVAVLPADVNGSSYKTTTEWVGRPGEPLPPGSGITERPEPVLSSACVVPSP 1359

Query: 823  ------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSK 875
                  TP V    G   +   L  +KG+G      +++A  D+ P+ SL D   R D  
Sbjct: 1360 EARDRWTPEVTVGWG---VRLGLHLVKGIGEQH-EALLDAERDRGPYRSLVDVVERTD-- 1413

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF- 934
             L   VLE L+ +GA+D  G  R +LL  L  +   ++     RT +     A ++G   
Sbjct: 1414 -LPEEVLERLIRSGAMDSLGRPRRELLWQLREVAGASRGRMDGRTVRGLGRAAGKRGAAA 1472

Query: 935  ----------SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                      +D   L   +    S R  +   VLG       + +++P L ++G     
Sbjct: 1473 GRPMDLRLPATDAPALPPIT---ESERIGDAYAVLGVDARRQVVGLFRPALDRLGAV-TN 1528

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             ++A  R   +R+  +VV++Q   T KG+
Sbjct: 1529 GALADRRSGPVRVGGLVVTRQHPMTAKGT 1557



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 152/535 (28%), Positives = 233/535 (43%), Gaps = 82/535 (15%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  H+++S L+GA + + ++++        +A TD N L+ ++ F+  A  AG+  +
Sbjct: 9   YAELHAHTNFSFLDGASAPDELVERAVELGLTGLAATDHNGLYGSVRFTTAAEDAGLHSV 68

Query: 71  I-------------------------------------GCQLDID--------------- 78
           I                                     G +L +D               
Sbjct: 69  IGAEIELLDPAVGDPAGTVIPPRRARRRGRAAAATADPGVELAVDDGRPTRPRPDRARLP 128

Query: 79  -MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
             +D +K   +G       P ++LL  +  G++ L  L+SR  +   G ++V      L 
Sbjct: 129 GHRDPVKEDFRGIGARARGPRLILLARSQIGWRSLCRLMSRANM--AGTKAVPRFRHALL 186

Query: 138 EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-VNLQRHR-GYDRY 195
           +   E +I L+GG SG I R         A          FGD  + + L  H    D +
Sbjct: 187 DEHHEDVIALSGGRSGEIGRRLLVGDRAGARAAAERLAARFGDGGFAIELGHHLLPDDDW 246

Query: 196 RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYL 254
             ++   LA    LP+V TN   +   ED E HDVL A+ H  T+ +  D  R+  + YL
Sbjct: 247 LVTESAALAADLRLPVVVTNAVHYARPEDRELHDVLTAIKHGRTLDTLADLRRIDGESYL 306

Query: 255 KNRSEMVSIFSDLP--------EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
           K+  E+ ++ + L         E +E +V IA  CS  L       P F   + +     
Sbjct: 307 KSGDELAALGAALDGAAARAWHEGIERSVAIAASCSVDLGFEQYRFPGFPVPDGE----T 362

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             + L     AG   R         YH        RL  EL VI R   + +FLI  D +
Sbjct: 363 PFSYLSELCWAGARRR---------YHPLTSAVVTRLAHELGVIERAGLAEFFLICWDLM 413

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +AK   IP   GRGS AGS+  Y L I+ ++P+R  LLFERF+N  R + PD DIDF  
Sbjct: 414 VFAKGRGIPAQ-GRGSAAGSIVTYVLGISRVEPIRHDLLFERFINEGRTTYPDVDIDFSS 472

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           +RR+EVI+YV  +YG E    +    + +A++A+R+VG AL  P   VDR+ K +
Sbjct: 473 ERREEVIQYVYERYGAEHTGMVCNLVTYRARSAVREVGYALGFPRPLVDRVAKAL 527


>gi|197261474|ref|YP_002154289.1| putative DNA polymerase III, alpha subunit [Pseudomonas phage LMA2]
 gi|197244564|emb|CAR31298.1| putative DNA polymerase III, alpha subunit [Pseudomonas phage LMA2]
          Length = 1036

 Score =  242 bits (617), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 163/556 (29%), Positives = 270/556 (48%), Gaps = 31/556 (5%)

Query: 315 AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
           A  G   RL++G I +    Q+Y  R   E+  I    F  YFL+VAD + +AKK+ + V
Sbjct: 245 AREGQAYRLSRGHIKE--WTQEYEDRFQEEIKQIQLKDFDSYFLVVADLVAFAKKHML-V 301

Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
           GP RGS AGS+  Y L IT++DPL   LLF+RF++  R  +PD DIDF    R  V  Y+
Sbjct: 302 GPARGSSAGSLVCYLLGITEVDPLPHRLLFQRFIDISRSDLPDIDIDFADTHRYLVFEYL 361

Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI----PNDPAHPVSLQ 490
           Q KYG   V ++    +L+A + +  VG+   +P+   D +   I      D  +   L+
Sbjct: 362 QQKYGTWNVVKLGNINTLKAASVIAHVGKRFGIPFHDTDNIKNSIIEYTSADERYGKGLE 421

Query: 491 AIADDSR----FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              + ++    FRE      +    LEI         H+  HAAGI++ +  +     + 
Sbjct: 422 DTFEKTQPGRDFREKYEIASACMGDLEIHPS------HSGVHAAGILVCNDEVIDFCTVT 475

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            +      V Q +    E   L+K D LGL+TL ++Q +    AQ     +L  +P +D 
Sbjct: 476 SE-----GVAQLDKPDSEYLNLLKIDALGLRTLGVIQDANCVTAQ-----ELYDLPLNDK 525

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
               +L      GIFQ E   +R     +     E+I  + +L RPGP+ + +   Y  R
Sbjct: 526 AVLDILNEDKMSGIFQFEGQAVRSVANAINITAFENIDHITALARPGPLSSGMATKYIER 585

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             G+E +    P ++  L  T GV +YQEQ+M I + +  +   +   +R+AM  +  EE
Sbjct: 586 VAGREPVTYTIPQVEQYLSGTYGVFLYQEQIMSIVKDIGQFDWEQTSAIRKAMSARKGEE 645

Query: 725 -MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +K++E FI GA   G++   A  +++ +  F  +GFN+SH+ +YAV++Y T +MK ++
Sbjct: 646 FFNKRRELFIEGAKTIGVAPDDAHRVWQEMVTFGAWGFNRSHSVSYAVVTYWTCYMKRYH 705

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            +E+ AA +    D+ + +    + A++  ++          +++ V D R+   +   K
Sbjct: 706 RLEYAAACLRAAKDDQQTVSILRELAKE-GVEYTALDPEHSELNWVVADGRLIGGIMNAK 764

Query: 844 GVGTTTARHIMEASAD 859
           G G   A   +    D
Sbjct: 765 GFGPAKAERFLRLRED 780


>gi|197261382|ref|YP_002154198.1| putative DNA polymerase III, alpha subunit [Pseudomonas phage LBL3]
 gi|197244472|emb|CAR31207.1| putative DNA polymerase III, alpha subunit [Pseudomonas phage LBL3]
          Length = 1035

 Score =  241 bits (616), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 162/551 (29%), Positives = 269/551 (48%), Gaps = 31/551 (5%)

Query: 315 AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
           A  G   RL++G I +    Q+Y  R   E+  I    F  YFL+VAD + +AKK+ + V
Sbjct: 244 AREGQAYRLSRGHIKE--WTQEYEDRFQEEIKQIQLKDFDSYFLVVADLVAFAKKHML-V 300

Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
           GP RGS AGS+  Y L IT++DPL   LLF+RF++  R  +PD DIDF    R  V  Y+
Sbjct: 301 GPARGSSAGSLVCYLLGITEVDPLPHRLLFQRFIDISRSDLPDIDIDFADTHRYLVFEYL 360

Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI----PNDPAHPVSLQ 490
           Q KYG   V ++    +L+A + +  VG+   +P+   D +   I      D  +   L+
Sbjct: 361 QQKYGTWNVVKLGNINTLKAASVIAHVGKRFGIPFHDTDNIKNSIIEYTSADERYGKGLE 420

Query: 491 AIADDSR----FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              + ++    FRE      +    LEI         H+  HAAGI++ +  +     + 
Sbjct: 421 DTFEKTQPGRDFREKYEIASACMGDLEIHPS------HSGVHAAGILVCNDEVIDFCTVT 474

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            +      V Q +    E   L+K D LGL+TL ++Q +    AQ     +L  +P +D 
Sbjct: 475 SE-----GVAQLDKPDSEYLNLLKIDALGLRTLGVIQDANCVTAQ-----ELYDLPLNDK 524

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
               +L      GIFQ E   +R     +     E+I  + +L RPGP+ + +   Y  R
Sbjct: 525 AVLDILNEDKMSGIFQFEGQAVRSVANAINITAFENIDHITALARPGPLSSGMATKYIER 584

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             G+E +    P ++  L  T GV +YQEQ+M I + +  +   +   +R+AM  +  EE
Sbjct: 585 VAGREPVTYTIPQVEQYLSGTYGVFLYQEQIMSIVKDIGQFDWEQTSAIRKAMSARKGEE 644

Query: 725 -MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +K++E FI GA   G++   A  +++ +  F  +GFN+SH+ +YAV++Y T +MK ++
Sbjct: 645 FFNKRRELFIEGAKTIGVAPDDANRVWQEMVTFGAWGFNRSHSVSYAVVTYWTCYMKRYH 704

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            +E+ AA +    D+ + +    + A++  ++          +++ V D R+   +   K
Sbjct: 705 RLEYAAACLRAAKDDQQTVSILRELAKE-GVEYTALDPEHSELNWVVADGRLIGGIMNAK 763

Query: 844 GVGTTTARHIM 854
           G G   A   +
Sbjct: 764 GFGPAKAERFL 774


>gi|218148596|ref|YP_002364364.1| hypothetical protein PP141_gp56 [Pseudomonas phage 14-1]
 gi|218059792|emb|CAU13911.1| hypothetical protein [Pseudomonas phage 14-1]
          Length = 1035

 Score =  241 bits (616), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 162/551 (29%), Positives = 268/551 (48%), Gaps = 31/551 (5%)

Query: 315 AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
           A  G   RL++G I +    Q+Y  R   E+  I    F  YFL+VAD + +AKK+ + V
Sbjct: 244 AREGQAYRLSRGHIKE--WTQEYEDRFQEEIKQIQLKDFDSYFLVVADLVAFAKKHML-V 300

Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
           GP RGS AGS+  Y L IT++DPL   LLF+RF++  R  +PD DIDF    R  V  Y+
Sbjct: 301 GPARGSSAGSLVCYLLGITEVDPLPHRLLFQRFIDISRSDLPDIDIDFADTHRYLVFEYL 360

Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI----PNDPAHPVSLQ 490
           Q KYG   V ++    +L+A + +  VG+   +P+   D +   I      D  +   L+
Sbjct: 361 QQKYGTWNVVKLGNINTLKAASVIAHVGKRFGIPFHDTDNIKNSIIEYTSADERYGKGLE 420

Query: 491 AIADDSR----FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              + +     FRE      +    LEI         H+  HAAGI++ +  +     + 
Sbjct: 421 DTFEKTHPGRDFREKYEIASACMGDLEIHPS------HSGVHAAGILVCNDEVIDFCTVT 474

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            +      V Q +    E   L+K D LGL+TL ++Q +    AQ     +L  +P +D 
Sbjct: 475 SE-----GVAQLDKPDSEYLNLLKIDALGLRTLGVIQDANCVTAQ-----ELYDLPLNDK 524

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
               +L      GIFQ E   +R     +     E+I  + +L RPGP+ + +   Y  R
Sbjct: 525 AVLDILNEDKMSGIFQFEGQAVRSVANAINITAFENIDHITALARPGPLSSGMATKYIER 584

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             G+E +    P ++  L  T GV +YQEQ+M I + +  +   +   +R+AM  +  EE
Sbjct: 585 VAGREPVTYTIPQVEQYLSGTYGVFLYQEQIMSIVKDIGQFDWEQTSAIRKAMSARKGEE 644

Query: 725 -MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +K++E FI GA   G++   A  +++ +  F  +GFN+SH+ +YAV++Y T +MK ++
Sbjct: 645 FFNKRRELFIEGAKTIGVAPDDAHRVWQEMVTFGAWGFNRSHSVSYAVVTYWTCYMKRYH 704

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            +E+ AA +    D+ + +    + A++  ++          +++ V D R+   +   K
Sbjct: 705 RLEYAAACLRAAKDDQQTVSILRELAKE-GVEYTALDPEHSELNWVVADGRLIGGIMNAK 763

Query: 844 GVGTTTARHIM 854
           G G   A   +
Sbjct: 764 GFGPAKAERFL 774


>gi|294663796|gb|ADF29350.1| putative DNA polymerase III alpha subunit [Pseudomonas phage JG024]
          Length = 1035

 Score =  241 bits (616), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 162/551 (29%), Positives = 269/551 (48%), Gaps = 31/551 (5%)

Query: 315 AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
           A  G   RL++G I +    Q+Y  R   E+  I    F  YFL+VAD + +AKK+ + V
Sbjct: 244 AREGQAYRLSRGHIKE--WTQEYEDRFQEEIKQIQLKDFDSYFLVVADLVAFAKKHML-V 300

Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
           GP RGS AGS+  Y L IT++DPL   LLF+RF++  R  +PD DIDF    R  V  Y+
Sbjct: 301 GPARGSSAGSLVCYLLGITEVDPLPHRLLFQRFIDISRSDLPDIDIDFADTHRYLVFEYL 360

Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI----PNDPAHPVSLQ 490
           Q KYG   V ++    +L+A + +  VG+   +P+   D +   I      D  +   L+
Sbjct: 361 QQKYGTWNVVKLGNINTLKAASVIAHVGKRFGIPFHDTDNIKNSIIEYTSADERYGKGLE 420

Query: 491 AIADDSR----FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              + ++    FRE      +    LEI         H+  HAAGI++ +  +     + 
Sbjct: 421 DTFEKTQPGRDFREKYEIASACMGDLEIHPS------HSGVHAAGILVCNDEVIDFCTVT 474

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            +      V Q +    E   L+K D LGL+TL ++Q +    AQ     +L  +P +D 
Sbjct: 475 SE-----GVAQLDKPDSEYLNLLKIDALGLRTLGVIQDANCVTAQ-----ELYDLPLNDK 524

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
               +L      GIFQ E   +R     +     E+I  + +L RPGP+ + +   Y  R
Sbjct: 525 AVLDILNEDKMSGIFQFEGQAVRSVANAINITAFENIDHITALARPGPLSSGMATKYIER 584

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             G+E +    P ++  L  T GV +YQEQ+M I + +  +   +   +R+AM  +  EE
Sbjct: 585 VAGREPVTYTIPQVEQYLSGTYGVFLYQEQIMSIVKDIGQFDWEQTSAIRKAMSARKGEE 644

Query: 725 -MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +K++E FI GA   G++   A  +++ +  F  +GFN+SH+ +YAV++Y T +MK ++
Sbjct: 645 FFNKRRELFIEGAKTIGVAPDDAHRVWQEMVTFGAWGFNRSHSVSYAVVTYWTCYMKRYH 704

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            +E+ AA +    D+ + +    + A++  ++          +++ V D R+   +   K
Sbjct: 705 RLEYAAACLRAAKDDQQTVSILRELAKE-GVEYTALDPEHSELNWVVADGRLIGGIMNAK 763

Query: 844 GVGTTTARHIM 854
           G G   A   +
Sbjct: 764 GFGPAKAEKFL 774


>gi|218457858|ref|YP_002418863.1| DNA Polymerase III alpha subunit [Pseudomonas phage SN]
 gi|218379126|emb|CAT99713.1| DNA Polymerase III alpha subunit [Pseudomonas phage SN]
          Length = 1036

 Score =  241 bits (615), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 161/548 (29%), Positives = 268/548 (48%), Gaps = 31/548 (5%)

Query: 318 GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
           G   RL++G I +    Q+Y  R   E+  I    F  YFL+VAD + +AKK+ + VGP 
Sbjct: 248 GQAYRLSRGHIKE--WTQEYEDRFQEEIKQIQLKDFDSYFLVVADLVAFAKKHML-VGPA 304

Query: 378 RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
           RGS AGS+  Y L IT++DPL   LLF+RF++  R  +PD DIDF    R  V  Y+Q K
Sbjct: 305 RGSSAGSLVCYLLGITEVDPLPHRLLFQRFIDISRSDLPDIDIDFADTHRYLVFEYLQQK 364

Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI----PNDPAHPVSLQAIA 493
           YG   V ++    +L+A + +  VG+   +P+   D +   I      D  +   L+   
Sbjct: 365 YGTWNVVKLGNINTLKAASVIAHVGKRFGIPFHDTDNIKNSIIEYTSADERYGKGLEDTF 424

Query: 494 DDSR----FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
           + ++    FRE      +    LEI         H+  HAAGI++ +  +     +  + 
Sbjct: 425 EKTQPGRDFREKYEIASACMGDLEIHPS------HSGVHAAGILVCNDEVIDFCTVTSE- 477

Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
                V Q +    E   L+K D LGL+TL ++Q +    AQ     +L  +P +D    
Sbjct: 478 ----GVAQLDKPDSEYLNLLKIDALGLRTLGVIQDANCVTAQ-----ELYDLPLNDKAVL 528

Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNG 667
            +L      GIFQ E   +R     +     E+I  + +L RPGP+ + +   Y  R  G
Sbjct: 529 DILNEDKMSGIFQFEGQAVRSVANAINITAFENIDHITALARPGPLSSGMATKYIERVAG 588

Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE-MD 726
           +E +    P ++  L  T GV +YQEQ+M I + +  +   +   +R+AM  +  EE  +
Sbjct: 589 REPVTYTIPQVEQYLSGTYGVFLYQEQIMSIVKDIGQFDWEQTSAIRKAMSARKGEEFFN 648

Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
           K++E FI GA   G++   A  +++ +  F  +GFN+SH+ +YAV++Y T +MK ++ +E
Sbjct: 649 KRRELFIEGAKTIGVAPDDAHRVWQEMVTFGAWGFNRSHSVSYAVVTYWTCYMKRYHRLE 708

Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
           + AA +    D+ + +    + A++  ++          +++ V D R+   +   KG G
Sbjct: 709 YAAACLRAAKDDQQTVSILRELAKE-GVEYTALDPEHSELNWVVADGRLIGGIMNAKGFG 767

Query: 847 TTTARHIM 854
              A   +
Sbjct: 768 PAKAEKFL 775


>gi|307297423|ref|ZP_07577229.1| DNA-directed DNA polymerase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916683|gb|EFN47065.1| DNA-directed DNA polymerase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 898

 Score =  240 bits (613), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 182/584 (31%), Positives = 287/584 (49%), Gaps = 49/584 (8%)

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
           A+ +     +Y  RL  EL+VI       YF+ V+  +  AK     +GPGRGS  GS+ 
Sbjct: 188 ALEEKKMGDEYLSRLKRELSVILAKNIQDYFMTVSKIVDIAKSIGCWIGPGRGSAVGSLV 247

Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
           +Y L IT IDP+   L FERFL+  R   PD D+D     R  +++ +   +G++R   I
Sbjct: 248 SYLLEITRIDPVAEDLFFERFLSLKRADPPDIDLDVDDKSRPVLLKKMYEYFGNDRFCLI 307

Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
            T  +   K A R++G+ L +     D++ KLI          +   D  RF  A   D 
Sbjct: 308 RTHSTYGFKGAARELGKKLGI---SKDKISKLI----------EWSKDGKRFPYAFEEDL 354

Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
            + RL ++S+ + GL+   S HAAG+++    L  L+P+  D   DLPV+ ++M  +   
Sbjct: 355 DMKRLFDMSKLIAGLFSGYSLHAAGVILSGISLKGLIPV--DFSEDLPVSLWDMDSLRIV 412

Query: 567 GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
           GL K D LGLK L+LL++    + Q     D    P  D  TY  L +  T GIFQLE+ 
Sbjct: 413 GLQKIDILGLKNLSLLRE----MTQGKEPWD---NPACDSNTYETLGSGYTTGIFQLEAP 465

Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKE 684
              + +  ++P  + D+   ++L RPGPI + V     K  +   +I  +   + P+L E
Sbjct: 466 YATKIIRSVKPSSLRDLSICIALNRPGPIKSGVTERFLKLSRVPSEIEKMRKRV-PVLAE 524

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
           T G ++YQEQV++IA  L      + ++LRRA+ KK ++ +D+    F S    + +   
Sbjct: 525 TAGFLVYQEQVLKIASSLLSLEADDGELLRRALSKKDRDAVDRL---FQSSPGYSRLPDE 581

Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
               ++  L  FA Y FNKSH+ +YAVIS+  A+ K+++P E     M  E+       +
Sbjct: 582 RRAKLYSFLLDFAGYAFNKSHSLSYAVISFWLAYFKSNHP-EIFYPLMLRELPRTS-FGR 639

Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF-D 863
              + R   +++   S+     D K+    +  S+  +   G             KPF D
Sbjct: 640 LVAEIRDRGLKL---SIENGVEDRKI----VSLSIPQLLNKGELKP---------KPFED 683

Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
           S   F  R +  K   R LE L+ +G LDC+G SR  LL+ +++
Sbjct: 684 SFFTFV-RNNRSKYQARDLEKLIKSGYLDCYG-SRNDLLKKMND 725


>gi|149408369|ref|YP_001294472.1| hypothetical protein ORF055 [Pseudomonas phage F8]
          Length = 1035

 Score =  240 bits (613), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 169/618 (27%), Positives = 291/618 (47%), Gaps = 44/618 (7%)

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           +  +  L  R   +    +  +A+ NT  +A + + +    AP++               
Sbjct: 190 IATEEELWTRLRHIMTREEFDKAIANTHAVAEQLADVQLAKAPMI-------------HL 236

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
           + ++   A  G   RL++G I +    Q Y  R   E+  I    F  YFL+VAD + +A
Sbjct: 237 DGDIVALAREGQAYRLSRGHIKE--WTQIYEDRFQEEIKQIQLKDFDSYFLVVADLVAFA 294

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           KK+ + VGP RGS AGS+  Y L IT++DPL   LLF+RF++  R  +PD DIDF    R
Sbjct: 295 KKHML-VGPARGSSAGSLVCYLLGITEVDPLPHRLLFQRFIDISRSDLPDIDIDFADTHR 353

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI----PNDP 483
             V  Y+Q KYG   V ++    +L+A + +  VG+   +P+   D +   I      D 
Sbjct: 354 YLVFEYLQQKYGTWNVVKLGNINTLKAASVIAHVGKRFGIPFHDTDNIKNSIIEYTSADE 413

Query: 484 AHPVSLQAIADDSR----FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            +   L+   + ++    FRE      +    LEI         H+  HAAGI++ +  +
Sbjct: 414 RYGKGLEDTFEKTQPGRDFREKYEVASACMGDLEIHPS------HSGVHAAGILVCNDEV 467

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
                +  +      + Q +    E   L+K D LGL+TL ++Q +    AQ     +L 
Sbjct: 468 IDFCTVTSE-----GIAQLDKPDSEYLNLLKIDALGLRTLGVIQDANCVTAQ-----ELY 517

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            +P +D     +L      GIFQ E   +R     +     E+I  + +L RPGP+ + +
Sbjct: 518 DLPLNDKAVLDVLNEDKMSGIFQFEGQAVRSVANAINITAFENIDHITALARPGPLSSGM 577

Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
              Y  R  G+E +    P ++  L  T GV +YQEQ+M I + +  +   +   +R+AM
Sbjct: 578 ATKYIERVAGREPVTYTIPQVEQYLSGTYGVFLYQEQIMSIVKDIGQFDWEQTSAIRKAM 637

Query: 718 GKKIKEE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             +  EE  +K++E FI GA   G++   A  +++ +  F  +GFN+SH+ +YAV++Y T
Sbjct: 638 SARKGEEFFNKRRELFIEGAKTIGVAPEDAHRVWQEMVTFGAWGFNRSHSVSYAVVTYWT 697

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            +MK ++ +E+ AA +    D+ + +    + A++  ++          +++ V D R+ 
Sbjct: 698 CYMKRYHRLEYAAACLRAAKDDQQTVSILRELAKE-GVEYTALDPEHSELNWVVADGRLI 756

Query: 837 YSLAAIKGVGTTTARHIM 854
             +   KG G   A   +
Sbjct: 757 GGIMNAKGFGPAKAERFL 774


>gi|219523926|ref|YP_002455987.1| DNA polymerase [Pseudomonas phage PB1]
 gi|190333522|gb|ACE73777.1| DNA polymerase [Pseudomonas phage PB1]
          Length = 1035

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 162/551 (29%), Positives = 268/551 (48%), Gaps = 31/551 (5%)

Query: 315 AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
           A  G   RL++G I +    Q Y  R   E+  I    F  YFL+VAD + +AKK+ + V
Sbjct: 244 AREGQAYRLSRGHIKE--WTQVYEDRFQEEIKQIQLKDFDSYFLVVADLVAFAKKHML-V 300

Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
           GP RGS AGS+  Y L IT++DPL   LLF+RF++  R  +PD DIDF    R  V  Y+
Sbjct: 301 GPARGSSAGSLVCYLLGITEVDPLPHRLLFQRFIDISRSDLPDIDIDFADTHRYLVFEYL 360

Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI----PNDPAHPVSLQ 490
           Q KYG   V ++    +L+A + +  VG+   +P+   D +   I      D  +   L+
Sbjct: 361 QQKYGTWNVVKLGNINTLKAASVIAHVGKRFGIPFHDTDNIKNSIIEYTSADERYGKGLE 420

Query: 491 AIADDSR----FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              + ++    FRE      +    LEI         H+  HAAGI++ +  +     + 
Sbjct: 421 DTFEKTQPGRDFREKYEIASACMGDLEIHPS------HSGVHAAGILVCNDEVIDFCTVT 474

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            +      V Q +    E   L+K D LGL+TL ++Q +    AQ     +L  +P +D 
Sbjct: 475 SE-----GVAQLDKPDSEYLNLLKIDALGLRTLGVIQDANCVTAQ-----ELYDLPLNDK 524

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
               +L      GIFQ E   +R     +     E+I  + +L RPGP+ + +   Y  R
Sbjct: 525 AVLDVLNEDKMSGIFQFEGQAVRSVANAINITAFENIDHITALARPGPLSSGMATKYIER 584

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             G+E +    P ++  L  T GV +YQEQ+M I + +  +   +   +R+AM  +  EE
Sbjct: 585 VAGREPVTYTIPQVEQYLSGTYGVFLYQEQIMSIVKDIGQFDWEQTSAIRKAMSARKGEE 644

Query: 725 -MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +K++E FI GA   G++   A  +++ +  F  +GFN+SH+ +YAV++Y T +MK ++
Sbjct: 645 FFNKRRELFIEGAKTIGVAPEDAHRVWQEMVTFGAWGFNRSHSVSYAVVTYWTCYMKRYH 704

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            +E+ AA +    D+ + +    + A++  ++          +++ V D R+   +   K
Sbjct: 705 RLEYAAACLRAAKDDQQTVSILRELAKE-GVEYTALDPEHSELNWVVADGRLIGGIMNAK 763

Query: 844 GVGTTTARHIM 854
           G G   A   +
Sbjct: 764 GFGPAKAERFL 774


>gi|154249666|ref|YP_001410491.1| DNA-directed DNA polymerase [Fervidobacterium nodosum Rt17-B1]
 gi|154153602|gb|ABS60834.1| DNA-directed DNA polymerase [Fervidobacterium nodosum Rt17-B1]
          Length = 853

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 182/584 (31%), Positives = 292/584 (50%), Gaps = 92/584 (15%)

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
           ++Y++RL+ E+ ++   KF  YF  V   ++ AK +NI VG GRGS  GS+ AY L IT 
Sbjct: 195 KEYKERLEREIRLVKSFKFEDYFYTVKRIVEIAKAHNIEVGYGRGSAVGSLLAYRLGITK 254

Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           IDP++++LLFERFLN  R   PD D+D    RR E+I+ +++++G+  V  I TF     
Sbjct: 255 IDPVKYNLLFERFLNEGRTDYPDIDLDIEDVRRQELIKLLKSEFGY--VYNISTF----- 307

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
                 VG    +P   +D     IP + A+                 L++  + R    
Sbjct: 308 ------VG----IPKKFLDS----IPEEYAN----------------ELSNIPIQR---- 333

Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
                      STHAAG++I   PL+  VPM     S +   +++M  ++  G IKFD L
Sbjct: 334 -----------STHAAGVIISTTPLN--VPMIHS-ESGIDTIEWDMDDLQYLGYIKFDLL 379

Query: 575 GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
           GLKTL++ ++  D ++Q   +            TY  ++   T  +FQLESS  +  +  
Sbjct: 380 GLKTLSIYKELRDTISQSFKEEKEEFK----KNTYRYISVGFTDNVFQLESSIGKSVVRD 435

Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
           ++P  I ++   +SL RPGP+ + +    R N K K +  + L   +L ET G+ IYQEQ
Sbjct: 436 VKPSNISELAITISLNRPGPLRSGITGEIR-NLKIKKLKKYNL--EILDETYGLPIYQEQ 492

Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKK----IKEEMDKQKERFISGASKNGISKTIAVNIF 750
           +M+IA  L+G+S ++AD+LR+A+ KK    I++  ++ K        K G+   +A NI 
Sbjct: 493 IMKIAMELAGFSSTQADILRKAIAKKDIDSIRQLYERLKNALFGKLGKEGLE--LAKNIL 550

Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA- 809
                F +Y FNKSHA AY+ ++Y  A+ K ++P  F    +  +           QDA 
Sbjct: 551 ----AFGEYAFNKSHAIAYSHLTYYMAYFKVNFPDIFYDTYLKYDTS-------ILQDAL 599

Query: 810 ---RQFNIQIMPPSVNTPCVDFKVGDNRIYY-SLAAIKGVGTTTARHIMEASADKPFDSL 865
              +  N +++PP + +        D +IY+  L  + G+    ++ +        F S 
Sbjct: 600 YNLQTLNYKVLPPKLFSNLKTMN-KDEKIYHLPLHILPGISVEKSKQLQTME----FKSF 654

Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
           EDF  + D   L   V+E+L+  GA D    SR + +Q L N++
Sbjct: 655 EDFVEKAD---LPLSVIEALIKVGAFDDIFESRRKAIQKLRNLR 695


>gi|126011012|ref|YP_001039762.1| hypothetical protein BcepF1.078 [Burkholderia ambifaria phage
           BcepF1]
 gi|119712588|gb|ABL96809.1| unknown [Burkholderia ambifaria phage BcepF1]
          Length = 956

 Score =  238 bits (607), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 170/577 (29%), Positives = 281/577 (48%), Gaps = 44/577 (7%)

Query: 270 ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
           A+ENT ++A     +    API+               E ++      G   RLA+G I 
Sbjct: 219 AIENTHDVAADLKGVALQKAPIISL-------------EGDMLAWCREGQAERLAKGHIK 265

Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
           +     +Y  RL  E   I    F  YFL VAD +++AK++ + VGP RGS AGS+  Y 
Sbjct: 266 E--WTNEYESRLLMECEQIRSKNFDSYFLCVADLVRFAKRHML-VGPARGSSAGSLVCYL 322

Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
           + IT++DPL + LLF+RF++  R   PD DIDF  ++R+ V  Y+++KYG   VA++   
Sbjct: 323 MGITEVDPLPYGLLFQRFIDVSRSDFPDIDIDFNDEKREMVFDYLRDKYGDASVARVGNV 382

Query: 450 GSLQAKAALRDVGRALQMPYSQVD----RLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
            +L+A + +  V +   + Y + D     L      D  +   L+     +   +   A 
Sbjct: 383 STLKAASVIGMVSKKFGIGYIENDYIKNSLLSYAKGDDRYGYELEDTFKQTEPGQDYAAT 442

Query: 506 -PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            P   R++    ++E    H S HAAGI++ + P+S    +  +      V   +    E
Sbjct: 443 HPGAARMM---AEVEIHPSHTSVHAAGILVCNDPVSDFCTVEAN-----GVASLDKDDAE 494

Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
              L+K D LGL+TL +++      A      +L  +   D   + +L     L IFQ E
Sbjct: 495 SLNLLKIDALGLRTLGIIES-----ANVMTPDELYALTPTDQRVFDVLNEGKVLAIFQFE 549

Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPML 682
            + +RQ  + +  D    I  + SL RPGP+   +   Y  R  GKE +    P +   L
Sbjct: 550 GNAVRQVTKRVHIDRFSKIDNITSLARPGPLGAGMDEPYIKRTAGKEAVTFAFPELRKYL 609

Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGI 741
            +T G+++YQEQ+M I + + G+       +R+AMGK K  E  DK  + F+ GA + GI
Sbjct: 610 GDTFGILLYQEQIMAIVREIGGFDWPRVTEIRKAMGKSKGAEYFDKHGDDFVKGAVERGI 669

Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
           +   A  +++ +  F  YGFNKSH+ AY++++Y T  +K  + +EF AA +    D  + 
Sbjct: 670 NAEAARKLWKEMVTFGAYGFNKSHSVAYSLVTYWTLHLKRFHRLEFAAACLRSAKDEQQT 729

Query: 802 I---KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
           I   ++  Q+  Q+    + P  +T   +++V + R+
Sbjct: 730 IAILRELVQEGVQYT--ALDPEYSTD--NWRVANGRL 762


>gi|313798984|gb|ADR82148.1| DNA polymerase III alpha subunit [Mycoplasma sp. 1220]
          Length = 337

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 132/344 (38%), Positives = 203/344 (59%), Gaps = 10/344 (2%)

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           D   +RRDEVI Y+  KYG E  + I TF +L AK ++RDVGR L +  +++D++ K + 
Sbjct: 1   DIQDNRRDEVINYIVEKYGIENCSLITTFQTLGAKNSIRDVGRVLNINLAEIDKISKTLA 60

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
           +  +     +    +SRFR A    P   +LLE+S+ +EGL R    H AGI+I D P+ 
Sbjct: 61  DGQSIE---EGYLKNSRFRIAIEKYP---KLLELSKNIEGLPRQKGVHPAGIIISDTPII 114

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ---KSLDFLAQRGVKVD 597
            ++P+       +      +++IEK GLIK DFLGLKTLT++Q   K L++  +      
Sbjct: 115 NIMPISVSTEK-INQVDLTLEYIEKFGLIKIDFLGLKTLTIIQNIEKDLNYEDRFDYIAS 173

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +   + D +T   L +  + GIFQ++S GM++ ++ +  D   D+ A++SL+RPGP++ 
Sbjct: 174 TTPNIYQDSQTLKCLNSTLSQGIFQIDSPGMKKTIKNVGIDTFNDLFAIISLFRPGPMEY 233

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           I  Y + K   + I  IHP+ D +++ET G+I+YQEQ+MQIAQ L G S  +AD+LRR +
Sbjct: 234 ISEYASNKKNPDNIELIHPVYDEIVRETFGIIVYQEQIMQIAQKLVGMSFGQADILRRTI 293

Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            KK   +M++ K  F   A KN I   I+  I+  + KFA YGF
Sbjct: 294 SKKDLIKMEQYKTFFNQLAQKNNIDPEISETIYRKIEKFASYGF 337


>gi|324017839|gb|EGB87058.1| DNA polymerase III, alpha subunit [Escherichia coli MS 117-3]
          Length = 209

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/205 (54%), Positives = 153/205 (74%), Gaps = 7/205 (3%)

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
           +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+
Sbjct: 5   LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 64

Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            + +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L 
Sbjct: 65  QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 124

Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 125 GADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAA 184

Query: 769 YAVISYQTAWMKTHYPVEFLAASMT 793
           YA++SYQT W+K HYP EF+AA MT
Sbjct: 185 YALVSYQTLWLKAHYPAEFMAAGMT 209


>gi|120609220|ref|YP_968898.1| DNA-directed DNA polymerase [Acidovorax citrulli AAC00-1]
 gi|120587684|gb|ABM31124.1| DNA polymerase III, alpha subunit [Acidovorax citrulli AAC00-1]
          Length = 668

 Score =  234 bits (597), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 195/704 (27%), Positives = 326/704 (46%), Gaps = 79/704 (11%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +V L+  S+++ L GA     ++ +        +A+ D  ++   +     A AAG++
Sbjct: 9   PDYVELRCVSNFTFLRGASDPEELVRRAQELGYSGLALADECSMAGVVRAHVAAKAAGLR 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM--------Y 120
            I+G Q  +          Q +T      ++V+L     GY  L E ++++        Y
Sbjct: 69  LILGAQFCV----------QPRTAEEARFTVVVLARNLNGYGNLCEFITKLRRSSAKGEY 118

Query: 121 LLDQGK---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            L QG+     +  CL+ L                   DR      +Q+        ++ 
Sbjct: 119 HLTQGQITGAELADCLALLCP-----------------DRPS--TDAQLEAAGTWALQQF 159

Query: 178 FGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            G R ++ + + R  D      ++  LA    LPLVA  +            DVL A   
Sbjct: 160 RG-RCWIGVDQVRQLDDEAWLHRMRTLAELTALPLVAVGDVHMHVRSRKPLQDVLTATRI 218

Query: 237 STVVSQKDRP-RVTPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFIL-----QVHA 289
              +++       + + +L+ R  +   F +DL   L  T+ +A RCSF +     Q   
Sbjct: 219 GKPLTECGHALHRSAERHLRTRLRLAQTFPADL---LAETLNVAARCSFSIDELKYQYPD 275

Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
            ++PR              + LR     G   R  +G I+    AQ     ++ EL +I 
Sbjct: 276 EVVPR---------GHTAASFLRQVTYEGAGRRWPEG-ISPTVQAQ-----IEHELELIC 320

Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +++  YFL V D + +A+  +I +  GRGS A SV  Y L +T++DP R S+LFERF++
Sbjct: 321 ELRYEHYFLTVYDIVAFARSRHI-LCQGRGSAANSVVCYCLGVTEVDPARMSVLFERFIS 379

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            +R   PD D+DF   RR+EVI+Y+  KYG +R A   T  S + K+A+RDVG+AL    
Sbjct: 380 RERNEPPDIDVDFEHQRREEVIQYLYTKYGRDRAALTATVISYRPKSAIRDVGKALGFDL 439

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFRE--ARLADPSVDRLLEISQKLEGLYRHAST 527
             +D L +         + L+      RF E    ++D +V +L+ ++ +L G  RH S 
Sbjct: 440 QTLDALAEGQKWFDGEDIRLE------RFEELGMSVSDLAVRQLITLTTQLIGFPRHLSQ 493

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           H  G V+    LS++VP+     +D  V +++   ++ AGL+K D L L  L+ ++++LD
Sbjct: 494 HTGGFVLTRDRLSRMVPIENASMADRTVIEWDKDDLDAAGLLKVDVLALGMLSAIRRALD 553

Query: 588 FLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            +  +RG    +  IP +D +TY ++    T+G+FQ+ES      L  ++P C  D++  
Sbjct: 554 MIGLRRGYAFGMQDIPAEDSDTYDMICRADTIGVFQIESRAQMSMLPRLRPRCFYDLVIE 613

Query: 647 VSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGV 688
           V++ RPGPI   +V  Y NR+ GKE +      +   L  T GV
Sbjct: 614 VAIVRPGPIQGGMVHPYLNRRQGKEPVTYPSEALKTALGRTLGV 657


>gi|172062460|ref|YP_001810111.1| DNA-directed DNA polymerase [Burkholderia ambifaria MC40-6]
 gi|171994977|gb|ACB65895.1| DNA-directed DNA polymerase [Burkholderia ambifaria MC40-6]
          Length = 641

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 176/596 (29%), Positives = 291/596 (48%), Gaps = 42/596 (7%)

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            ++Y+  KYG +R A      + + ++ALR+ G+AL +  + VDR+ K      +    LQ
Sbjct: 1    MQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDQAIVDRVAKQHHWFDSRADLLQ 60

Query: 491  AIADDSRFREARLADPSV---DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                  RF EA L DP      +    + +L G  R  S H+ G VI    L++LVP+  
Sbjct: 61   ------RFAEAGL-DPEAPLNQQWAAFAAQLLGYPRPLSQHSGGFVISRGKLTRLVPVEN 113

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  + Q++   IE  G++K D L L  L++++++LD +++ RG   +L  IP +D 
Sbjct: 114  AAMEDRSIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISEKRGETFELQDIPAEDK 173

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             T+ +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGP+   +V+    R
Sbjct: 174  ATHEMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQGGMVHPFLRR 233

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKE 723
            + G E +      ++  L  T GV I+QEQVMQ+A L +G+S  EAD LRRAM   K K 
Sbjct: 234  RQGLEPVTFPSEGMEKALARTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKRKG 293

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++   ER +SG  + G  +  A +IF  +  F +YGF +SHAA++A++ Y +AW++ H 
Sbjct: 294  GLEPYHERLVSGMLERGYDREFAESIFAQIKGFGEYGFPESHAASFALLVYSSAWLRRHE 353

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDNRIYY 837
            P  FLAA +  +        +  QDAR+  ++++P  VN    D  +         R+ +
Sbjct: 354  PAVFLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSAIEGPATSAPVRLGF 413

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            SL  ++G+    A  I  A A +PF  + D   R    +L+R  L++L  A AL      
Sbjct: 414  SL--LRGMRQDVAGRIELARAARPFVDIADLARRA---RLDRHDLQALARANAL------ 462

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
                 +SL    + A            ++    +GT  D   +      +       + R
Sbjct: 463  -----RSLAGGNRRAALWLAAAAVPDRDLL---RGTERDD-AVPALPRASEGHEIVTDYR 513

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKG 1012
             +GF    HPL + +  L    ++  E+ +AT+R G   R   +V  +Q+  T  G
Sbjct: 514  AMGFTLGRHPLALLRERLALDRLQSAEQ-LATLRSGQLARACGLVTVRQRPGTANG 568


>gi|300932140|ref|ZP_07147424.1| DNA polymerase III, alpha subunit [Escherichia coli MS 187-1]
 gi|300460097|gb|EFK23590.1| DNA polymerase III, alpha subunit [Escherichia coli MS 187-1]
          Length = 209

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 111/205 (54%), Positives = 152/205 (74%), Gaps = 7/205 (3%)

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
           +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+
Sbjct: 5   LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 64

Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            + +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L 
Sbjct: 65  QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 124

Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 125 GADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAA 184

Query: 769 YAVISYQTAWMKTHYPVEFLAASMT 793
           YA++SYQT W+K HYP EF+AA  T
Sbjct: 185 YALVSYQTLWLKAHYPAEFMAAGKT 209


>gi|300920132|ref|ZP_07136584.1| DNA polymerase III, alpha subunit [Escherichia coli MS 115-1]
 gi|300412845|gb|EFJ96155.1| DNA polymerase III, alpha subunit [Escherichia coli MS 115-1]
          Length = 208

 Score =  231 bits (589), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 110/203 (54%), Positives = 151/203 (74%), Gaps = 7/203 (3%)

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
           +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+
Sbjct: 5   LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 64

Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            + +V N  +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L 
Sbjct: 65  QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 124

Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AA
Sbjct: 125 GADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAA 184

Query: 769 YAVISYQTAWMKTHYPVEFLAAS 791
           YA++SYQT W+K HYP EF+AA 
Sbjct: 185 YALVSYQTLWLKAHYPAEFMAAG 207


>gi|168210465|ref|ZP_02636090.1| PHP domain protein [Clostridium perfringens B str. ATCC 3626]
 gi|170711464|gb|EDT23646.1| PHP domain protein [Clostridium perfringens B str. ATCC 3626]
          Length = 416

 Score =  231 bits (588), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 142/415 (34%), Positives = 233/415 (56%), Gaps = 25/415 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6   FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71  IGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           +GC++ +  +   +K  ++    +     +VLLV   +GY+ L+++VS +  ++      
Sbjct: 66  LGCEVYVVPKSRKIKSNDEDNKTY----HLVLLVKNEKGYENLMKIVS-VASIEGFYYKP 120

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           RI   +L+E  +EG+I L+    G + +A    +   A +  + ++  F D  Y+ LQ H
Sbjct: 121 RIDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAAIFYRDTFKDGFYLELQNH 179

Query: 190 RGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R 
Sbjct: 180 GIEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRY 239

Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-----------I 296
             D  YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F           +
Sbjct: 240 PSDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEGVEPFEYL 299

Query: 297 EKECDD--IQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            K C D  I + EE   L+ K +  ++     G        ++  +RL++EL VI +M +
Sbjct: 300 RKTCFDGLIDRLEELKPLKEKGIYDIDKVYEIGE--NNEKVKEDIERLEYELGVIKQMGY 357

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFER L
Sbjct: 358 VDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERKL 412


>gi|168216561|ref|ZP_02642186.1| DNA polymerase III, alpha subunit [Clostridium perfringens NCTC
           8239]
 gi|182381547|gb|EDT79026.1| DNA polymerase III, alpha subunit [Clostridium perfringens NCTC
           8239]
          Length = 416

 Score =  230 bits (587), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 143/414 (34%), Positives = 232/414 (56%), Gaps = 23/414 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6   FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +GC++ + +  + K+ N  +        +VLLV   +GY+ L+++VS +  ++      R
Sbjct: 66  LGCEVYV-VPKSRKIKNNDEDN--KTYHLVLLVKNEKGYENLMKIVS-VASIEGFYYKPR 121

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I   +L+E  +EG+I L+    G + +A    +   A +    ++  F D  Y+ LQ H 
Sbjct: 122 IDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAATFYRDTFNDGFYLELQNHG 180

Query: 191 GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R  
Sbjct: 181 IEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRYP 240

Query: 250 PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-----------IE 297
            D  YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F           + 
Sbjct: 241 SDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEGVEPFEYLR 300

Query: 298 KECDD--IQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
           K C D  I + EE   L+ K +  ++     G        ++  +RL++EL VI +M + 
Sbjct: 301 KTCFDGLIDRLEELKSLKEKGIYDIDKVYEIGE--NNDKVKEDIERLEYELGVIKQMGYV 358

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
            YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFER L
Sbjct: 359 DYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERKL 412


>gi|255316456|ref|ZP_05358039.1| DNA polymerase III catalytic subunit, DnaE type [Clostridium
           difficile QCD-76w55]
          Length = 482

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 136/411 (33%), Positives = 226/411 (54%), Gaps = 24/411 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H+ YSLL+  + + ++    A + + + +ITD   ++ A+ F ++  +   +PII
Sbjct: 89  IRLHGHTEYSLLDSIVRIGDL----AKETEYSCSITDHGVMYGAINFYKQMVSKNKKPII 144

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +   +  D     N           +VLL     GY+ + +L S  Y  +   +S +I
Sbjct: 145 GFEAYSESIDGSMNKNH----------LVLLAKDEVGYKNISKLCSMAY--NNFYKSPQI 192

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             SWL++   +G+I+L+G  +G I RA    ++++A++  L  K +F D  Y+ +QRH  
Sbjct: 193 KYSWLEKY-NKGVIVLSGCIAGEIPRAIADGNNKLAKQIALKLKGIFKDDFYIEIQRHNI 251

Query: 192 YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            D  +   Q++ LA   ++ +VAT+++ +L +ED   H+  +     T +    R + + 
Sbjct: 252 KDEDKINKQLMLLAKKLDIKVVATDDAHYLKKEDSLVHETHLCNQTKTTMDNPKRFKFSG 311

Query: 251 D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
           D +Y+    +M   + D+PE L NT+EI  +C         ILP F  ++  ++  EE  
Sbjct: 312 DGYYVHTCGDMEEKYKDIPEVLFNTLEIMDKCDLHFDFGHNILPVFPREDEKNLNNEEY- 370

Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             +     G + R    +    Y + +Y++RL+FE+  I +M +  YFLIV DFI +AKK
Sbjct: 371 -FKKLCEEGFKERFYGSS---KYESVEYKERLEFEVKTICKMGYPDYFLIVWDFINFAKK 426

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
           NNIP+GPGRGS  GS+ AY L IT++DP+R+ LLFERFLNPDR+SMPD D+
Sbjct: 427 NNIPIGPGRGSCVGSLVAYVLKITEMDPIRYDLLFERFLNPDRISMPDIDV 477


>gi|169344046|ref|ZP_02865034.1| DNA polymerase III, alpha subunit [Clostridium perfringens C str.
           JGS1495]
 gi|169297781|gb|EDS79878.1| DNA polymerase III, alpha subunit [Clostridium perfringens C str.
           JGS1495]
          Length = 416

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 142/415 (34%), Positives = 232/415 (55%), Gaps = 25/415 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6   FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71  IGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           +GC++ +  +   +K  ++    +     +VLLV   +GY+ L+++VS +  ++      
Sbjct: 66  LGCEVYVVPKSRKIKSNDEDNKTY----HLVLLVKNEKGYENLMKIVS-VASIEGFYYKP 120

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           RI   +L+E  +EG+I L+    G + +A    +   A +    ++  F D  Y+ LQ H
Sbjct: 121 RIDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAATFYRDTFKDGFYLELQNH 179

Query: 190 RGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R 
Sbjct: 180 GIEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRY 239

Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-----------I 296
             D  YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F           +
Sbjct: 240 PSDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEGVEPFEYL 299

Query: 297 EKECDD--IQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            K C D  I + EE   L+ K +  ++     G        ++  +RL++EL VI +M +
Sbjct: 300 RKTCFDGLIDRLEELKPLKEKGIYDIDKVYEIGE--NNEKVKEDIERLEYELGVIKQMGY 357

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFER L
Sbjct: 358 VDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERKL 412


>gi|110803674|ref|YP_697668.1| DNA polymerase III, subunit alpha (dnaE)-like protein [Clostridium
           perfringens SM101]
 gi|110684175|gb|ABG87545.1| DNA polymerase III, subunit alpha (dnaE)-like protein [Clostridium
           perfringens SM101]
          Length = 416

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 142/415 (34%), Positives = 232/415 (55%), Gaps = 25/415 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6   FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71  IGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           +GC++ +  +   +K  ++    +     +VLLV   +GY+ L+++VS +  ++      
Sbjct: 66  LGCEVYVVPKSRKIKSNDEDNKTY----HLVLLVKNEKGYENLMKIVS-VASIEGFYYKP 120

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           RI   +L+E  +EG+I L+    G + +A    +   A +    ++  F D  Y+ LQ H
Sbjct: 121 RIDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAATFYRDTFKDGFYLELQNH 179

Query: 190 RGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R 
Sbjct: 180 GIEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRY 239

Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-----------I 296
             D  YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F           +
Sbjct: 240 PSDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEGVEPFEYL 299

Query: 297 EKECDD--IQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            K C D  I + EE   L+ K +  ++     G        ++  +RL++EL VI +M +
Sbjct: 300 RKTCFDGLIDRLEELKPLKEKEIYDIDKVYEIGE--NNEKVKEDIERLEYELGVIKQMGY 357

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFER L
Sbjct: 358 VDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERKL 412


>gi|313798987|gb|ADR82149.1| DNA polymerase III alpha subunit [Mycoplasma anatis]
          Length = 334

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/345 (37%), Positives = 197/345 (57%), Gaps = 22/345 (6%)

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           +RR+EVI Y+ +KYG E  A I TF +L AK ++RDVGR L +  S++D++ K + +  +
Sbjct: 3   NRREEVINYIVDKYGIENCALITTFQTLGAKNSIRDVGRVLNINLSEIDKISKTLADGQS 62

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                Q   ++SRFR A    P   +LLE+S+ +EGL R    H AGI+I D P+  ++P
Sbjct: 63  IEEGYQ---NNSRFRIAIEKYP---KLLELSKNIEGLPRQKGVHPAGIIISDTPIIDIMP 116

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK---------SLDFLAQRGVK 595
           +       +      + +IEK GLIK DFLGLKTLT++Q            D++A     
Sbjct: 117 ISFSTEK-INQVDLTLDYIEKFGLIKIDFLGLKTLTIIQNIEKDLNYENCFDYIASTTPN 175

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
           +      + D +T   L +  + GIFQ++S GM++ +  +  D   D+ A++SL+RPGP+
Sbjct: 176 I------YSDQKTLMCLNSTLSQGIFQIDSPGMKRTISNVGIDTFNDLFAIISLFRPGPM 229

Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
           + I  Y   K    KI  IHP+ D +++ET G+I+YQEQ+MQIAQ L G S  +AD+LRR
Sbjct: 230 EYIKEYALNKKNPNKIELIHPIYDEIVRETFGIIVYQEQIMQIAQKLVGMSFGQADILRR 289

Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            + KK   +M++ K  F   A  N I    +  I+  + KFA YG
Sbjct: 290 TISKKDLLKMEQYKTFFNDLAKNNNIDPHTSETIYNKIEKFASYG 334


>gi|168212733|ref|ZP_02638358.1| DNA polymerase III, alpha subunit [Clostridium perfringens CPE str.
           F4969]
 gi|170715762|gb|EDT27944.1| DNA polymerase III, alpha subunit [Clostridium perfringens CPE str.
           F4969]
          Length = 416

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 141/415 (33%), Positives = 231/415 (55%), Gaps = 25/415 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6   FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71  IGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           +GC++ +  +   +K  ++    +     +VLLV   +GY+ L+++VS +  ++      
Sbjct: 66  LGCEVYVVPKSRKIKSNDEDNKTY----HLVLLVKNEKGYENLMKIVS-VASIEGFYYKP 120

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           RI   +L+E  +EG+I L+    G + +A    +   A +    ++  F D  Y+ LQ H
Sbjct: 121 RIDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAATFYRDTFKDGFYLELQNH 179

Query: 190 RGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R 
Sbjct: 180 GIEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRY 239

Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-----------I 296
             D  YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F           +
Sbjct: 240 PSDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEGVEPFEYL 299

Query: 297 EKECDD--IQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            K C D  I + EE    + K +  ++     G        ++  +RL++EL VI +M +
Sbjct: 300 RKTCFDGLIDRLEELKPFKEKGIYDIDKVYEIGE--NNEKVKEDIERLEYELGVIKQMGY 357

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFER L
Sbjct: 358 VDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERKL 412


>gi|239618295|ref|YP_002941617.1| DNA-directed DNA polymerase [Kosmotoga olearia TBF 19.5.1]
 gi|239507126|gb|ACR80613.1| DNA-directed DNA polymerase [Kosmotoga olearia TBF 19.5.1]
          Length = 914

 Score =  227 bits (579), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 195/633 (30%), Positives = 312/633 (49%), Gaps = 84/633 (13%)

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
           LPRF  K       EE   LR  A+ GL+          G   + Y +RLD EL ++   
Sbjct: 171 LPRFKHKIPVHTTIEE---LRALAIEGLK--------EAGITDKKYLERLDKELKIVQDK 219

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            F  YFL++A+ ++ AK     VGPGRGS  GS+   AL IT +DPL++ L FERFLNP 
Sbjct: 220 GFQDYFLLIAEIVKLAKSIGCWVGPGRGSAVGSLLVRALGITAVDPLKYDLYFERFLNPA 279

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R   PD D+D   ++R E+I  +   +  E+V  I T G+   ++A R + R +++  S+
Sbjct: 280 REDFPDIDLDVEDEKRPELIHKITEHFSSEKVCLIQTMGTFSFRSAARALARKMKVSESE 339

Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
           +  L     N    P SL               D  +  + + + +L GLY   S HAAG
Sbjct: 340 IRNLISWSRNGKFLPSSLS-------------KDKRMTSIFKFANQLSGLYSTLSVHAAG 386

Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
           I++ +  L  ++P+ +    ++ ++Q++MK +E  G  K D LGL+ L+LL+K  +    
Sbjct: 387 IILSEEDLRTIIPLRKS--DEIYISQWDMKSLEYLGFQKVDLLGLRNLSLLRKLCE---- 440

Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
              K   +  P D+ +++ +L+   T GIFQ+E +     ++ + P+ +ED+   ++L R
Sbjct: 441 --GKEPWNKNP-DNRKSFAILSRGYTTGIFQIEGNEATAIIKKISPENLEDLAIGIALNR 497

Query: 652 PGPIDNIVV--YNNRK---------NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
           PGPI + +   Y  R+            E I S        L++T G++I+QEQV+++A 
Sbjct: 498 PGPISSGITREYIRRRRFLKAIGNYTAGEHIAS--------LEDTLGLLIFQEQVIRLAI 549

Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG--ISKTIAVNIFELLAKFAD 758
                   E ++LRRA+ KK  E ++K  E     + +N   ISK +     E L  F+ 
Sbjct: 550 SELKLKPEEGELLRRALSKKDTETIEKLAEVVQERSPENSEKISKYL-----EFLRDFSG 604

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ--I 816
           Y FNKSH+ AY+++SY  A+ K + PV F    + L MD+  +++    +AR+  ++  I
Sbjct: 605 YSFNKSHSIAYSLLSYWIAYHKANNPVLFYKLLIPL-MDSGSRLRA-AAEARELGLKFSI 662

Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
             P  N   +    GD R   SL  I                 KP    E+F + V   +
Sbjct: 663 FNPG-NRNNIILVPGDFRP--SLTKI--------------DTSKP-PKEENFFAYVRKNR 704

Query: 877 --LNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             L    LE L+  G  D +G SR++LL+ ++N
Sbjct: 705 NYLTAADLEFLIKTGFFDQYG-SRIKLLKDINN 736


>gi|313798997|gb|ADR82150.1| DNA polymerase III alpha subunit [Mycoplasma anatis]
          Length = 334

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 129/345 (37%), Positives = 196/345 (56%), Gaps = 22/345 (6%)

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           +RR+EVI Y+ +KYG E  A I TF +L AK ++RDVGR L +  S++D++ K + +  +
Sbjct: 3   NRREEVINYIVDKYGIENCALITTFQTLGAKNSIRDVGRVLNINLSEIDKISKTLADGQS 62

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                Q   ++SRFR      P   +LLE+S+ +EGL R    H AGI+I D P+  ++P
Sbjct: 63  IEEGYQ---NNSRFRITIEKYP---KLLELSKNIEGLPRQKGVHPAGIIISDTPIIDIMP 116

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK---------SLDFLAQRGVK 595
           +       +      + ++EK GLIK DFLGLKTLT++Q            D++A     
Sbjct: 117 ISFSTEK-INQVDLTLDYVEKFGLIKIDFLGLKTLTIIQNIEKDLNYENCFDYIASTTPN 175

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
           +      + D +T   L +  + GIFQ++S GM++ +  +  D   D+ A++SL+RPGP+
Sbjct: 176 I------YSDQKTLMCLNSTLSQGIFQIDSPGMKRTISNVGIDTFNDLFAIISLFRPGPM 229

Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
           + I  Y   K    KI  IHP+ D +++ET G+I+YQEQ+MQIAQ L G S  +AD+LRR
Sbjct: 230 EYIKEYALNKKNPNKIELIHPIYDEIVRETFGIIVYQEQIMQIAQKLVGMSFGQADILRR 289

Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            + KK   +M++ K  F   A  N I    +  I+  + KFA YG
Sbjct: 290 TISKKDLLKMEQYKTFFNDLAKNNNIDPHTSETIYNKIEKFASYG 334


>gi|207108969|ref|ZP_03243131.1| DNA polymerase III subunit alpha [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 256

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 113/252 (44%), Positives = 162/252 (64%), Gaps = 9/252 (3%)

Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
           +G E I      ++P+LK T G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M
Sbjct: 1   HGIEPIAYAFKELEPILKPTYGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIM 60

Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              K +F+ GA   G     A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  
Sbjct: 61  ADNKAKFVEGAKNLGHDGQKAANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKH 120

Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIY 836
           EF+AA +T E + +E + ++  + R   I++MPP +N+   DF V          + +I 
Sbjct: 121 EFMAAMLTSESNKIESVARYIDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIV 180

Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
           + L AIKGVG    ++I+E  A   + SLEDF SRVD  KL ++ LE LV +G+LD  GY
Sbjct: 181 FGLGAIKGVGGEPIKNIIEERAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGY 240

Query: 897 SRMQLLQSLDNI 908
           +R  +L +LD I
Sbjct: 241 TRKTMLANLDLI 252


>gi|269956241|ref|YP_003326030.1| DNA polymerase III subunit alpha [Xylanimonas cellulosilytica DSM
            15894]
 gi|269304922|gb|ACZ30472.1| DNA polymerase III, alpha subunit [Xylanimonas cellulosilytica DSM
            15894]
          Length = 1185

 Score =  224 bits (572), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 136/430 (31%), Positives = 227/430 (52%), Gaps = 37/430 (8%)

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
            +++++++++   L RH   H+ G+V+ DRP+ ++ P+         V Q++ +    AGL
Sbjct: 596  EQVIDLAERFLRLPRHLGIHSGGMVMCDRPVIEVCPVEWARMEGRTVLQWDKEDCADAGL 655

Query: 569  IKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            +KFD LGL  LT ++ + + + A+ G ++ L  +P DD   Y LL    T+G+FQ+ES  
Sbjct: 656  VKFDLLGLGMLTAIRYAFEGIEARTGERLQLHHLPEDDPAVYDLLCAADTVGVFQVESRA 715

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
                L  ++P    DI+  V+L RPGPI  +++  +  R+N ++K+   HPL++  L  T
Sbjct: 716  QMATLPRLRPRNFYDIVVEVALIRPGPIQGNSVNPFIERRNKRQKVTYPHPLLEKSLSRT 775

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKT 744
             GV ++QEQ+MQ+A  ++G+S +E+D LRRAMG K+  E M+  + R + G +KNG+   
Sbjct: 776  LGVPLFQEQLMQMAIDVAGFSPAESDRLRRAMGSKRSLERMEALRGRLMEGMTKNGVPPD 835

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +   I+  L  FAD+GF +SHA ++A + Y ++W+K H+P  F A  +  +       + 
Sbjct: 836  VQEEIYGKLKAFADFGFPESHAYSFAFLVYASSWLKVHHPAAFYAGLLAAQPMGFYSPQS 895

Query: 805  FCQDARQFNIQIMPP----SVNTPCV--------------------DFKVGDN-----RI 835
               DAR+  + ++ P    S    CV                    D + G +      +
Sbjct: 896  LVADARRHGVTVLRPDLGASAALACVERLPDDAPLEPERIPLPRSPDPRFGPDPDLRLAV 955

Query: 836  YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               LA ++ +GT  A  I+ E SA+ PF  L D   RVD   L    LE+L  AGA +  
Sbjct: 956  RQGLAEVRSIGTDLAESIVAERSANGPFRDLRDLVRRVD---LTTPQLEALATAGATESL 1012

Query: 895  GYSRMQLLQS 904
            G  R + L +
Sbjct: 1013 GVGRREALWA 1022



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 146/486 (30%), Positives = 220/486 (45%), Gaps = 23/486 (4%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           + SP +  L  HSS+S L+GA     +  + A     A+A+TD + L+  +  SQ A + 
Sbjct: 3   DPSPRYAELHAHSSFSFLDGASHPEELAAEAARLGLSALAVTDHDGLYGVVRHSQTAASV 62

Query: 66  GIQPIIGCQLDIDMQDNLK------MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            ++ + G +L + +           +      P P    +++L   A+GY RL   ++  
Sbjct: 63  RLRTVFGAELHLPVPPGPGVGPRPVLDPPTGIPDPRAEHLLVLARGADGYARLSSAIAAA 122

Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
           +L    K         L E      ++LTG   G + RA     +  A + L     LFG
Sbjct: 123 HLEAGVKGKATYHPERLGEQAAGEWLVLTGCRKGSVRRALAAEGTGGARRELDRLVALFG 182

Query: 180 DRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
                      G  R  +    +  LA+   LPLVAT N+ +    D      L AV  +
Sbjct: 183 HENVAVEITATGDPRDADLHDALATLAHDARLPLVATTNAHYARPRDAHLAQALAAVRAT 242

Query: 238 TVVSQKDR--PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
           + + Q D   P   P  +L++ +EM  +    P ++     +A  C+F L++ AP LP +
Sbjct: 243 SSLEQMDGWLPGA-PTAHLRSGAEMARLHHRHPHSVPTAAALADECAFDLRLVAPGLPPY 301

Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK--GYHAQDYRQRLDFELNVIARMKF 353
              E  D    E + LR     G   R       +  G  AQ     LD EL VI  + F
Sbjct: 302 PVPEGHD----EASWLRELVYRGATDRYGPRHAERIAGAWAQ-----LDHELAVIEGLDF 352

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
            GYFL+V D +++ + + I +  GRGS A S   YAL IT +D ++  LLFERFL P+R 
Sbjct: 353 PGYFLVVYDLVEFCRVHGI-LAQGRGSAANSAVCYALGITAVDAVKNRLLFERFLAPERD 411

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
             PD DID    RR+EVI++V  K+G    AQ+    S + ++A+RD  RAL     Q D
Sbjct: 412 GPPDIDIDIESVRREEVIQHVYTKFGRSHAAQVANVISYRPRSAVRDAARALGYDVGQQD 471

Query: 474 RLCKLI 479
              K I
Sbjct: 472 AWSKSI 477


>gi|4566842|gb|AAD23482.1|AF117853_1 DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|4566843|gb|AAD23483.1|AF117854_1 DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|4566844|gb|AAD23484.1|AF117855_1 DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|4566845|gb|AAD23485.1|AF117856_1 DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|4566846|gb|AAD23486.1|AF117857_1 DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|4566847|gb|AAD23487.1|AF117858_1 DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 356

 Score =  221 bits (562), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 137/368 (37%), Positives = 203/368 (55%), Gaps = 25/368 (6%)

Query: 32  ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91
           ++ K+AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q + 
Sbjct: 7   LVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEE 56

Query: 92  PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151
               +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG 
Sbjct: 57  FGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGK 115

Query: 152 SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHE 208
           SG + RA    + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++
Sbjct: 116 SGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYD 173

Query: 209 LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDL 267
           LP+VATN  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+
Sbjct: 174 LPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADI 233

Query: 268 PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA--- 324
           PEAL N+VEIA+RC+  +++    LP F            E+ L  K+  GLE RL    
Sbjct: 234 PEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLF 288

Query: 325 QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 289 PDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 348

Query: 385 VTAYALTI 392
           + AYAL I
Sbjct: 349 LVAYALKI 356


>gi|213022841|ref|ZP_03337288.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. 404ty]
          Length = 346

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/327 (39%), Positives = 179/327 (54%), Gaps = 20/327 (6%)

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT 
Sbjct: 1    GKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 60

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIY 836
            W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D   I 
Sbjct: 61   WLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIV 120

Query: 837  YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L+ +GA D  G
Sbjct: 121  YGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 180

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS------- 948
              R  L+ SL +  K A    K       ++F    G  ++    E   +E S       
Sbjct: 181  PHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPW 232

Query: 949  --SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG     A +V++ +
Sbjct: 233  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 292

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 293  VMVTKRGNRIGICTLDDRSGRLEVMLF 319


>gi|320093660|ref|ZP_08025539.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979392|gb|EFW10875.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 599

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/433 (31%), Positives = 211/433 (48%), Gaps = 50/433 (11%)

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
           L GL RH   H  G+V+ D+P+S + P+         V Q++ +  E AGL+KFD LGL 
Sbjct: 1   LAGLPRHMGIHPGGMVLTDQPVSSVCPISWGSVPGRSVLQWDKEDCEDAGLVKFDLLGLG 60

Query: 578 TLTLLQKSLD-----------------FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
            L+ L+ + D                  L +RG+ + L  +P +D   Y LL    T+G+
Sbjct: 61  MLSALRLAFDRLAGAPEGEPWGRRSAPLLGRRGLPIGLHTLPQEDPGVYDLLCAADTVGV 120

Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI 678
           FQ+ES      L  ++P C  DI+  V+L RPGPI   ++  +  R+ G+E++  +HPL+
Sbjct: 121 FQVESRAQMSTLPRLKPRCFYDIVVEVALIRPGPIQGGSVTPFLRRRAGEEEVSYLHPLL 180

Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGAS 737
           +P L +T GV ++QEQ+M+IA   +G++ ++AD LRRA+G K+  E ++  +   + G  
Sbjct: 181 EPALAKTLGVPLFQEQLMRIAADAAGFTPAQADRLRRALGAKRGVERVEGLRPALMEGMG 240

Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
           + GI       I E L  FAD+GF +SHA ++A I Y +AW+K   P  F AA +  +  
Sbjct: 241 RRGIDAATGAAIVEQLKGFADFGFPESHAFSFAHIVYASAWLKLRAPEHFYAALLACQPM 300

Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------------------------DN 833
                     DAR+  +++ PP VN   V   V                         D 
Sbjct: 301 GFYSPSSLVHDARRHGVRVAPPDVNHSRVGAVVEEADEGEGGVPRAPEPVPQAVPLDVDP 360

Query: 834 R--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
           R  +   L +I G+G         A  + P+ S+ D   R    +L  + LE L  AGAL
Sbjct: 361 RLAVRIGLGSIAGLGAAAE-RTATARGEGPYSSVGDLARRA---RLGEKDLERLAHAGAL 416

Query: 892 DCFGYSRMQLLQS 904
              G SR + + S
Sbjct: 417 ASLGASRREGMWS 429


>gi|328462500|gb|EGF34509.1| DNA polymerase III DnaE [Lactobacillus rhamnosus MTCC 5462]
          Length = 331

 Score =  218 bits (555), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 117/330 (35%), Positives = 181/330 (54%), Gaps = 19/330 (5%)

Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
           ++NI  +  RKNG+E I    P +  +LK T GV++YQEQVMQ+A ++ G+SL EAD+LR
Sbjct: 1   MENIDTFIARKNGQEPIAYPDPALAKILKPTYGVLVYQEQVMQVANVMGGFSLGEADLLR 60

Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           RAM KK    +  ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+ +++
Sbjct: 61  RAMSKKKSSVLAAEQDKFIEGALKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSKVAF 120

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             A++K HYP  F AA M   M+N+ K++ + Q+A+   + ++ P +N     FK+   +
Sbjct: 121 WLAYLKVHYPAAFFAALMNASMNNLPKLRTYVQEAKARKVGLLGPDINQSNGGFKLSQGK 180

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
           I + L +IKG+       I  A  + PF  L D   R+D K L     ++   AGA D F
Sbjct: 181 IRFGLLSIKGMRRDFVEAIFAARKNGPFKDLRDLLQRLDPKWLKTDYYKAPTLAGAFDQF 240

Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE----NSSV 950
             +R Q L +LD +    +            +  ++ G FS    L   ++E     +S 
Sbjct: 241 SNNRAQTLANLDELINSVK------------LAGNDVGLFS---MLAPKTIEVPEMPASE 285

Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
           R E E  VLG Y SGHP+D Y P+    G+
Sbjct: 286 RLEAEAEVLGVYLSGHPVDKYAPLKPSTGL 315


>gi|300900776|ref|ZP_07118921.1| DNA polymerase III, alpha subunit [Escherichia coli MS 198-1]
 gi|300355741|gb|EFJ71611.1| DNA polymerase III, alpha subunit [Escherichia coli MS 198-1]
          Length = 189

 Score =  217 bits (552), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 105/188 (55%), Positives = 140/188 (74%), Gaps = 7/188 (3%)

Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGK 668
           +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+
Sbjct: 2   MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 61

Query: 669 EKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
           E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  E
Sbjct: 62  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 121

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           EM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HY
Sbjct: 122 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 181

Query: 784 PVEFLAAS 791
           P EF+AA 
Sbjct: 182 PAEFMAAG 189


>gi|223469661|gb|ACM90173.1| DnaE [Vibrio parahaemolyticus]
 gi|223469669|gb|ACM90177.1| DnaE [Vibrio parahaemolyticus]
 gi|223469679|gb|ACM90182.1| DnaE [Vibrio parahaemolyticus]
 gi|223469683|gb|ACM90184.1| DnaE [Vibrio parahaemolyticus]
 gi|223469691|gb|ACM90188.1| DnaE [Vibrio parahaemolyticus]
          Length = 196

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 109/201 (54%), Positives = 140/201 (69%), Gaps = 8/201 (3%)

Query: 259 EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
           EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       EE   L  K+  G
Sbjct: 1   EMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMEETEFLVMKSREG 55

Query: 319 LEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
           LE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVG
Sbjct: 56  LEERLEFLFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVG 115

Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
           PGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V 
Sbjct: 116 PGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVA 175

Query: 436 NKYGHERVAQIITFGSLQAKA 456
             YG + V+QIITFG++ AKA
Sbjct: 176 EMYGRDAVSQIITFGTMAAKA 196


>gi|223469667|gb|ACM90176.1| DnaE [Vibrio parahaemolyticus]
 gi|223469671|gb|ACM90178.1| DnaE [Vibrio parahaemolyticus]
 gi|223469675|gb|ACM90180.1| DnaE [Vibrio parahaemolyticus]
 gi|223469677|gb|ACM90181.1| DnaE [Vibrio parahaemolyticus]
 gi|223469687|gb|ACM90186.1| DnaE [Vibrio parahaemolyticus]
 gi|223469689|gb|ACM90187.1| DnaE [Vibrio parahaemolyticus]
 gi|223469693|gb|ACM90189.1| DnaE [Vibrio parahaemolyticus]
 gi|223469695|gb|ACM90190.1| DnaE [Vibrio parahaemolyticus]
 gi|223469697|gb|ACM90191.1| DnaE [Vibrio parahaemolyticus]
          Length = 196

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/201 (54%), Positives = 140/201 (69%), Gaps = 8/201 (3%)

Query: 259 EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
           EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       EE   L  K+  G
Sbjct: 1   EMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMEETEFLVMKSREG 55

Query: 319 LEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
           LE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVG
Sbjct: 56  LEERLEFLFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVG 115

Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
           PGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V 
Sbjct: 116 PGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVA 175

Query: 436 NKYGHERVAQIITFGSLQAKA 456
             YG + V+QIITFG++ AKA
Sbjct: 176 EMYGRDAVSQIITFGTMAAKA 196


>gi|223469685|gb|ACM90185.1| DnaE [Vibrio parahaemolyticus]
          Length = 196

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/201 (54%), Positives = 141/201 (70%), Gaps = 8/201 (3%)

Query: 259 EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
           EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       EE   L  K+  G
Sbjct: 1   EMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMEETEFLVMKSREG 55

Query: 319 LEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
           LE RL      +    +   +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVG
Sbjct: 56  LEERLEFLFPEEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVG 115

Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
           PGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V 
Sbjct: 116 PGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVA 175

Query: 436 NKYGHERVAQIITFGSLQAKA 456
             YG + V+QIITFG++ AKA
Sbjct: 176 EMYGRDAVSQIITFGTMAAKA 196


>gi|300990396|ref|ZP_07179194.1| DNA polymerase III, alpha subunit [Escherichia coli MS 200-1]
 gi|300305749|gb|EFJ60269.1| DNA polymerase III, alpha subunit [Escherichia coli MS 200-1]
          Length = 192

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 104/188 (55%), Positives = 139/188 (73%), Gaps = 7/188 (3%)

Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGK 668
           +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+
Sbjct: 2   MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 61

Query: 669 EKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
           E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  E
Sbjct: 62  EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 121

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           EM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HY
Sbjct: 122 EMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 181

Query: 784 PVEFLAAS 791
           P EF+A  
Sbjct: 182 PAEFMAGG 189


>gi|157310965|ref|YP_001468961.1| putative DNA polymerase III alpha subunit [Corynebacterium phage
           P1201]
 gi|95832113|gb|ABF57513.1| putative DNA polymerase III alpha subunit [Corynebacterium phage
           P1201]
          Length = 652

 Score =  215 bits (547), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 174/649 (26%), Positives = 294/649 (45%), Gaps = 73/649 (11%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           +K   FV L  H+S+S  +G  S    + ++      A+A+T+   + S ++  Q A  A
Sbjct: 27  KKDMKFVSLHSHTSFSSGDGHGSPAEHVARVKELGMSALALTEHGTVSSHVQLEQAALKA 86

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           GI+PI G +  +      +  +Q            +L    EGY+ L  +V+  Y   + 
Sbjct: 87  GIKPIFGVEAYVAEPGEKRKFHQ-----------TILAMNEEGYRNLSRMVTESYKKKED 135

Query: 126 KQSVR-----ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ--------------- 165
           K            + L   GTEGL++L+G +   +        SQ               
Sbjct: 136 KSGFYHYPTINTETLLNRHGTEGLVILSGCADSWLSCTLAGGKSQGLRVREDIGPAQYSD 195

Query: 166 -----VAEKRLLTFKKLFGDRLYVNLQRHRGYDR--YRESQVVQLAYTHELPLVATNNSL 218
                +  + +  F  ++GDR Y+ +Q    YDR  +   Q+  L+   ++PLVAT ++ 
Sbjct: 196 DDRLQMGAELVERFLDVYGDRYYLEVQPFSNYDRTVFLNQQIESLSKELDVPLVATADAH 255

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMV------SIFSDLP-EA 270
           +   ED+E   +  A+     + + DR     P  Y ++  EM        +  D   +A
Sbjct: 256 YPYPEDWEIQKLSNAIKWKIPMDKMDRDYAADPCTYPESDREMAIRLIKAGVSKDGAVKA 315

Query: 271 LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
           + N+  +A R +  L   + +  RF   E +         L+     G++ R       +
Sbjct: 316 INNSSRVADRLNVTLPKTSQV--RF--SESNGTASHAAYLLKEAIKEGVKFRAETNERFR 371

Query: 331 G---YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                  ++Y  R+  EL VI    FS YFLI    + WAK N I VGPGRGS AGS+  
Sbjct: 372 EDFRKRKEEYTARIKKELAVIIPKDFSDYFLINQQILGWAKDNGIAVGPGRGSAAGSLVC 431

Query: 388 YALTITDIDPLRF-SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
           Y L I++++P+ F  +LFERFL+P R   PD D D+  DRR+EV  + ++ YG + V  I
Sbjct: 432 YLLRISEVNPMEFPQMLFERFLDPGREDPPDVDTDYADDRRNEVFEFARSIYGVDNVGNI 491

Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSRFREARLAD 505
             F   + K A++D  +A+  P  + +  C+ I   P   P       D +      +A 
Sbjct: 492 GNFSRFRGKTAIKDTAKAIGAPPWEAEEFCEFIVEAPYGDPREFDTAEDTA------IAF 545

Query: 506 PSVDRL------LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ-- 557
           P   ++      LE++ +LEG  +    HAAG+VI + P+S    +Y   +++  +T+  
Sbjct: 546 PEAKKIIDNHPGLELAFRLEGDQKTLGVHAAGMVISNSPISDTCAIYEREKTNGDMTEVL 605

Query: 558 -FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            ++ +     G++K D LGLKT+T++  ++  + + G K D+   P DD
Sbjct: 606 AYDKRDSAYLGMLKLDCLGLKTMTIISDTIKSVNEGG-KSDIK--PTDD 651


>gi|223469663|gb|ACM90174.1| DnaE [Vibrio parahaemolyticus]
 gi|223469665|gb|ACM90175.1| DnaE [Vibrio parahaemolyticus]
 gi|223469681|gb|ACM90183.1| DnaE [Vibrio parahaemolyticus]
          Length = 196

 Score =  214 bits (546), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 108/201 (53%), Positives = 140/201 (69%), Gaps = 8/201 (3%)

Query: 259 EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
           +M  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       EE   L  K+  G
Sbjct: 1   DMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMEETEFLVMKSREG 55

Query: 319 LEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
           LE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVG
Sbjct: 56  LEERLEFLFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVG 115

Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
           PGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V 
Sbjct: 116 PGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVA 175

Query: 436 NKYGHERVAQIITFGSLQAKA 456
             YG + V+QIITFG++ AKA
Sbjct: 176 EMYGRDAVSQIITFGTMAAKA 196


>gi|19548816|gb|AAL90805.1| polymerase III subunit alpha [Escherichia coli]
          Length = 223

 Score =  214 bits (545), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 104/221 (47%), Positives = 151/221 (68%), Gaps = 6/221 (2%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLL 612
           +TLT++  +L+ + +R  K     +D++ IP DD +++ +L
Sbjct: 180 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 220


>gi|223469673|gb|ACM90179.1| DnaE [Vibrio parahaemolyticus]
          Length = 196

 Score =  214 bits (545), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 108/201 (53%), Positives = 139/201 (69%), Gaps = 8/201 (3%)

Query: 259 EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
           EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       EE   L  K+  G
Sbjct: 1   EMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMEETEFLVMKSREG 55

Query: 319 LEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
           LE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVG
Sbjct: 56  LEERLEFLFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVG 115

Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
           PGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V 
Sbjct: 116 PGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVA 175

Query: 436 NKYGHERVAQIITFGSLQAKA 456
             YG + V+ IITFG++ AKA
Sbjct: 176 EMYGRDAVSHIITFGTMAAKA 196


>gi|212695655|ref|ZP_03303783.1| hypothetical protein ANHYDRO_00172 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677328|gb|EEB36935.1| hypothetical protein ANHYDRO_00172 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 405

 Score =  214 bits (544), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 138/416 (33%), Positives = 221/416 (53%), Gaps = 35/416 (8%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           + +F HL +H+ YSLL+G   ++ +++K+   +  + AITD  N++  +EF +K    GI
Sbjct: 2   TNNFTHLHLHTEYSLLDGFTKIDKLMEKLKEYKMNSCAITDHGNMYGVIEFYKKCQDNGI 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           +PIIGC++ +   D+     Q K  +     ++LL    +GYQ LI++VS+ Y  +    
Sbjct: 62  KPIIGCEVYVSENDHKIKNPQNKRYY----HLILLAKNNKGYQNLIKIVSKAYT-EGFYY 116

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
             RI    L+E   + +I L+   +G I++    N  + A +    +  LFG +  Y+ +
Sbjct: 117 KPRIDFEVLEEY-KDDIIALSACLNGEINQRILENDIEKAYQTAQKYLDLFGRENFYLEI 175

Query: 187 QRHRGYDRYRESQVVQ--LAYTHE---LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           Q H      +E ++V   L   HE   + +V TN+  ++ + D    DVL  +   + + 
Sbjct: 176 QNHG----LKEQKIVNQNLLKIHEDLKIEMVCTNDVHYVEKNDSFYQDVLSCIQTGSFLE 231

Query: 242 QKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            + R ++  D  YLK++  M  IF D P A EN+ +IA  C+  L+ H P LP F     
Sbjct: 232 DEKRMKMPCDEFYLKDQQMMSEIFKDFPRAYENSQKIADMCNVKLEFHNPHLPYFT---- 287

Query: 301 DDIQKEEENELRNKAVAGLEV--RLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGY 356
               K  EN      +  L+    L    +AK Y   D +  +R + E++VI  M +  Y
Sbjct: 288 ----KVPEN------MTNLDYLKYLVNKGLAKKYGKVDEKIQKRAEKEISVINNMGYVDY 337

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           FLIV DF+++AK N I VGPGRGS AGS+ +YAL IT IDP++++LLFERF  P +
Sbjct: 338 FLIVWDFVRYAKDNKIAVGPGRGSAAGSIISYALDITQIDPIKYNLLFERFFKPRK 393


>gi|312271562|gb|ADQ56136.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. HB0308-1A5]
          Length = 336

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/350 (38%), Positives = 194/350 (55%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   GI+PIIG    +          Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGIKPIIGADFML----------QSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    +  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNIGYKNLTLLISKAYLRGHVQHQPVLDKAWLIE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  EK L  ++  F D  Y+ L R    D   ES +   ++LA  +ELP+VATN  +
Sbjct: 114 GNQQQVEKCLEFYQTHFADHFYLELIRTGRADE--ESYLHFALELAELYELPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL+  +EM  +F+D+PEALEN+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRTEAEMCELFADIPEALENSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F   E   I    E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNF-PTEGMAI----EDFLVMKSREGLEDRLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|330990198|ref|ZP_08314176.1| Error-prone DNA polymerase 2 [Gluconacetobacter sp. SXCC-1]
 gi|329762744|gb|EGG79210.1| Error-prone DNA polymerase 2 [Gluconacetobacter sp. SXCC-1]
          Length = 632

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 183/627 (29%), Positives = 283/627 (45%), Gaps = 58/627 (9%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +V LQV ++YS L GA   + +  +       AI ITD N+L   +   + A   G++ 
Sbjct: 3   GYVPLQVATNYSFLRGASHPDELFARAGELGLRAIGITDHNSLAGIVRAHRAAGEHGVRL 62

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           ++GC+LD++                 +P ++   +    Y RL  L++ +     GK   
Sbjct: 63  VVGCRLDLE----------------DMPPVLAYPTDRAAYGRLCHLLT-LGRKRAGKGG- 104

Query: 130 RICLSWLQEIGTEG----LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
              L+W +++  EG    LI+L       +  A           R+    +  G   YV 
Sbjct: 105 -FSLTW-RDLEREGAGLLLILLPDAPDATLSAAL---------ARMEAHARTGGLPGYVA 153

Query: 186 L-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-K 243
           L +R+R  D  R +++  +A T  L  V T + L+ +   +   DVL  + H   V Q  
Sbjct: 154 LVRRYRPGDAARLARIADMAMTAGLRPVVTGDVLYHNAGRHILQDVLGCIRHGCTVDQLG 213

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
           DR       +L    E+   ++    A+  + EIA  C F L   A   P     E D  
Sbjct: 214 DRRETCSGRHLVAEREIREDYAGHEAAIARSAEIAALCRFSLDDLAYQYP----DETDAS 269

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               +  L       L+ R   GA   G  AQ     L  EL++IA + ++ YFL V   
Sbjct: 270 GNTPQETLAALVRTHLKDRYPAGA-PDGVLAQ-----LRHELDLIASLDYAPYFLTVNTI 323

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           ++ A++  I V  GRGS A S   Y L IT IDP+R  LLFERF++ +R   PD D+DF 
Sbjct: 324 VRHARQQGI-VCQGRGSAANSAVCYVLGITAIDPVRSGLLFERFVSAERREPPDIDVDFE 382

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            DRR+EVI+++   YG +R A   T    + K ALRDVG+AL +P      L +      
Sbjct: 383 SDRREEVIQWIYAHYGRDRAALCATVMRYRRKGALRDVGKALGVPEDVTATLSR------ 436

Query: 484 AHPVSLQA----IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            H   L +    +AD +R     L DP +   L ++ +L G  R   TH  G V+    L
Sbjct: 437 -HLTGLSSDGDTLADRARELGLNLDDPRLRLTLHLAGELIGFPRQLGTHPGGFVLTHDRL 495

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
             LVP+      D  +  ++   I+    +K D LGL  L  ++++   L    G ++D+
Sbjct: 496 DDLVPIEPAAMEDRQIIVWDKDDIDHLRFMKVDVLGLGMLGCMRRAFALLETVHGTRMDM 555

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLES 625
           + IP +D  TY ++    T+G FQ+ES
Sbjct: 556 ASIPPEDPATYRMIARADTIGTFQIES 582


>gi|223036032|gb|ACM78669.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. PS0705-4B2]
          Length = 336

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 133/348 (38%), Positives = 195/348 (56%), Gaps = 21/348 (6%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A  +G++PIIG   D  MQ +      G+     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYGTAHGSGVKPIIGA--DFKMQSD----EFGEE----LTQVTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L +   GY+ L  L+S+ YL    +    I  +WL E+ +EGLI+L+GG SG I R    
Sbjct: 55  LAADNVGYKNLTLLISKAYLRGHVQHHPVIDKAWLAEM-SEGLIVLSGGKSGEIGRGLLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
            + Q+ +  +  +K+ F DR Y+ L R  R  +       V+LA   +LP+VATN  +FL
Sbjct: 114 GNRQIVQGCVDFYKQHFPDRFYLELLRTGRPDEETYLHFAVELAEQQDLPVVATNEVVFL 173

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
           S + ++AHD+ +A+     +    RP+  +P  YL+   EM  +F+D+PEALEN+VEIA+
Sbjct: 174 SPDLFDAHDIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAK 233

Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQD 336
           RC+  +++    LP F  +       +E   L  K+  GLE RL         +     +
Sbjct: 234 RCNVTVRLGEYFLPAFPTE-----GMKETEFLVMKSREGLEERLEFLFPDEEERKRRRPE 288

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
           Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 289 YDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGS 336


>gi|237711879|ref|ZP_04542360.1| DNA polymerase III alpha subunit [Bacteroides sp. 9_1_42FAA]
 gi|317474977|ref|ZP_07934246.1| bacterial DNA polymerase III alpha subunit [Bacteroides eggerthii
           1_2_48FAA]
 gi|229454574|gb|EEO60295.1| DNA polymerase III alpha subunit [Bacteroides sp. 9_1_42FAA]
 gi|316908880|gb|EFV30565.1| bacterial DNA polymerase III alpha subunit [Bacteroides eggerthii
           1_2_48FAA]
          Length = 702

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 150/487 (30%), Positives = 245/487 (50%), Gaps = 36/487 (7%)

Query: 417 DFDIDFCQDRRDEVIRYVQNKY---GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
           D D+D+  DRR E+  Y++ +Y   G +RV    TF +++ KAAL+DV R  ++P+S V+
Sbjct: 13  DIDVDYASDRRQEIKDYLEERYNADGRQRVFSAGTFTTMKLKAALKDVARVHRVPHSIVN 72

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            +  +I +        +  A + + R+     P V   +E  Q L G  + AS HA+ IV
Sbjct: 73  YITAMIDDGTDWTGLFRQAASNRKLRDFIQTYPLV---IEDVQGLLGQPKAASIHASAIV 129

Query: 534 IGDRPLSQLVPMYRDVRSD-----LPV--------TQFNMKWIEKAGLIKFDFLGLKTLT 580
           +         P  RD R       LPV        ++F+   +++ GL+K D L  K L 
Sbjct: 130 V--------TPDTRDGRPAECFDFLPVRKMDGALVSEFDGYSVDEIGLLKEDVLATKELA 181

Query: 581 LLQKSLDFLAQR-GVKVDLSLIPFD---DHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            L   +  + +  G ++ +  I  D   D +TY LL+   T  +FQ  S G+ + ++ +Q
Sbjct: 182 KLSAVIALVNRNFGQELTIGRITQDMLEDGKTYRLLSDGNTQNVFQFSSPGITRFIQDVQ 241

Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL-IDPMLKETQGVIIYQEQV 695
           P+CIED+IA+ +LYRP  +D     +  +  + ++  ++        K T G+++YQEQ 
Sbjct: 242 PECIEDLIAVNALYRPATLDIGATDDYVRFRRGEVAPVYNYGCYEATKNTFGIMVYQEQF 301

Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           M +A  L G+ L + D+LR+A+GKK  + M   K  FI+GA  NG     A  I+  +  
Sbjct: 302 MSVAHTLGGFDLGKTDLLRKAIGKKKADLMATLKADFIAGAVGNGCPDYEAEEIWHKIEV 361

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
              Y FN+SHAAAYA+ +Y  AW+K +YP  F   ++    D+ E      +  R    +
Sbjct: 362 AGKYSFNRSHAAAYALTAYCGAWLKANYPSAFYTVALQW-ADDKEIPSLMAEMERCSPAK 420

Query: 816 IMPPSVNTPCVDF--KVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRV 872
           I+PP +N    +F      + I++SL  IK VG  T  +I+ E      +  +E+F  R+
Sbjct: 421 IVPPDINRSGTEFFTDYATDEIFWSLTRIKQVGLRTVEYIVTERDRGGAYTGIENFIHRI 480

Query: 873 DSKKLNR 879
              KL +
Sbjct: 481 FRYKLKK 487


>gi|223036000|gb|ACM78653.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. L8M]
 gi|312271564|gb|ADQ56137.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. HB0308-2A5]
 gi|312271568|gb|ADQ56139.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. HB0308-1A6]
          Length = 336

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 136/350 (38%), Positives = 195/350 (55%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   GI+PIIG    +          Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGIKPIIGADFML----------QSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    +  +WL +  TEGLI+L+GG SG + RA   
Sbjct: 55  LAKNNIGYKNLTLLISKAYLRGHVQHQPVLDKAWLID-HTEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  EK L  ++  F D  Y+ L R    D   ES +   + +A  +ELP+VATN  +
Sbjct: 114 GNQQQVEKCLEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYELPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL+  +EM  +F+D+PEALEN+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRTEAEMCELFADIPEALENSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ-- 335
           A+RC+  +++    LP F   E   I    E+ L  K+  GLE RL          AQ  
Sbjct: 232 AKRCNVTVRLGEYFLPNF-PTEGMAI----EDFLVMKSREGLEDRLEFLFPDPEVRAQSR 286

Query: 336 -DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|298487242|ref|ZP_07005291.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
 gi|298158266|gb|EFH99337.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
          Length = 574

 Score =  211 bits (537), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 155/537 (28%), Positives = 255/537 (47%), Gaps = 42/537 (7%)

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
            P + R+L ++ +L G  RH S H  G VI + PL  LVP+     +D  + Q++   ++ 
Sbjct: 2    PILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLVPVENAAMADRTIIQWDKDDLDL 61

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GL+K D L L  L+ L+++ D +   RG +  L+ +P DD +TY +++   T+G+FQ+E
Sbjct: 62   VGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADLPGDDRKTYEMISRADTIGVFQIE 121

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN-RKNGKEKIVSIHPLIDPMLK 683
            S      L  ++P+   D++  V++ RPGPI   +V+   R+  KE+ ++  P +  + +
Sbjct: 122  SRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRRNKEEAITYPPKLKSVFE 181

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGIS 742
             T GV ++QEQVM++A + + Y+  EAD LRRAM   K    ++  +ER  +G  KNG  
Sbjct: 182  RTLGVPLFQEQVMEVAIIAADYTPGEADELRRAMAAWKRHGGLEPHRERLRTGMLKNGYE 241

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
               A  IFE +  F  YGF +SHAA++A+++Y + W+K H P  F  A +          
Sbjct: 242  ADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPAAFTCALINSWPMGFYSP 301

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDF---------KVGDNRIYYSLAAIKGVGTTTARHI 853
             +  QDAR+ +I+I P  V     D          +  +  I   L  ++G     A  I
Sbjct: 302  DQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDRTRNLAIRLGLRMVRGFREEDALRI 361

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
              A A +PF    D   R +   L+ R  E+L  +GAL             L   +  A+
Sbjct: 362  EVARAKRPFVDATDLTLRAE---LDSRAAEALADSGALG-----------GLIGHRHRAR 407

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
            W E         +F  +  +   ++ L   +V    V    +   LG     HPL + + 
Sbjct: 408  W-EVAGVEAQRPLF-DDLPSEETQVILPLPTVAEDLV---ADYTTLGTTLGPHPLALLR- 461

Query: 974  ILRKMGIKGYEESVATIRGNNIR---LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
              R++  K +  S   +   N R   +A +V+ +Q+  T  G     VTF     E+
Sbjct: 462  --RQLAAKRFRSSQDLLHLENDRTLSVAGLVIGRQRPGTASG-----VTFVTLEDEF 511


>gi|223035996|gb|ACM78651.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. K0706-35]
          Length = 336

 Score =  211 bits (536), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 132/348 (37%), Positives = 195/348 (56%), Gaps = 21/348 (6%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A  +G++PIIG   D  MQ +      G+     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYGTAHGSGVKPIIGA--DFKMQSD----EFGEE----LTQVTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L +   GY+ L  L+S+ YL    +    I  +WL E+ +EGLI+L+GG SG I R    
Sbjct: 55  LAADNVGYKNLTLLISKAYLRGHVQHHPVIDKAWLAEM-SEGLIVLSGGKSGEIGRGLLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
            + Q+ +  +  +K+ F DR Y+ L R  R  +       V+LA   +LP+VATN  +FL
Sbjct: 114 GNRQIVQGCVDFYKQHFPDRFYLELLRTGRPDEETYLHFAVELAEQQDLPVVATNEVVFL 173

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
           S + ++AH++ +A+     +    RP+  +P  YL+   EM  +F+D+PEALEN+VEIA+
Sbjct: 174 SPDLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAK 233

Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQD 336
           RC+  +++    LP F  +       +E   L  K+  GLE RL         +     +
Sbjct: 234 RCNVTVRLGEYFLPAFPTE-----GMKETEFLVMKSREGLEERLEFLFPDEEERKRRRPE 288

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
           Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 289 YDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGS 336


>gi|330971219|gb|EGH71285.1| error-prone DNA polymerase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 520

 Score =  211 bits (536), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 160/563 (28%), Positives = 266/563 (47%), Gaps = 66/563 (11%)

Query: 97  PSIVLLVSTAEGYQRLIELVS-----------RMYLLDQGKQSVRICLSWLQEIGTEGLI 145
           P +VLLV    GY+ L +L++           R+   D       +   WL ++  +   
Sbjct: 1   PKVVLLVENQAGYEALCKLITVARRRARKGEYRLLREDFEPAPDGLLALWLPDLDGDAQA 60

Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-RYRESQVVQLA 204
            L GG                        ++ F +RL++ +  HRG D   R + ++ LA
Sbjct: 61  CLAGGR---------------------WLRERFAERLWLGVGLHRGPDDEQRLADLLALA 99

Query: 205 YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSI 263
            +  +P VA+ +    +       D + A+ H T V++         + +L+    +   
Sbjct: 100 QSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEAGHLLFANGERHLRPLDALSEH 159

Query: 264 FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK---AVAGLE 320
           + D    L  +V IARRC+F L                D++ E  +EL  K   + + L 
Sbjct: 160 YPDW--LLAESVRIARRCTFDL---------------GDLKYEYPHELVPKGQTSTSWLR 202

Query: 321 VRLAQGAIAK--GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
               +G   +  G      R +++ EL +IA  KF  YFL V D +++A+  +I +  GR
Sbjct: 203 ELTERGVRRRWPGGLTPATRAQVEKELALIAEKKFDSYFLTVHDIVEFARSQHI-LCQGR 261

Query: 379 GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
           GS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  DRR+EVI+Y+  +Y
Sbjct: 262 GSAANSAVCYALGITELNPEQSNLLFERFISRERNEPPDIDVDFEHDRREEVIQYIFRRY 321

Query: 439 GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
           G  R A      +     A+RDV + L +P  Q++ L +      A      ++    R 
Sbjct: 322 GRGRAALTAVASTYHGSGAMRDVAKVLGLPPDQINALAE------AFSRWSDSLPSPERL 375

Query: 499 REARL-AD-PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           RE    AD P + R+L ++ +L G  RH S H  G VI + PL  LVP+     +D  + 
Sbjct: 376 REYGFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLVPVENAAMADRTII 435

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTK 615
           Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P DD +TY +++  
Sbjct: 436 QWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGQRWTLATLPGDDRKTYEMISRA 495

Query: 616 GTLGIFQLESSGMRQALEGMQPD 638
            T+G+FQ+ES      L  ++P+
Sbjct: 496 DTIGVFQIESRAQMAMLPRLRPE 518


>gi|223035992|gb|ACM78649.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. K0406-01S]
          Length = 336

 Score =  210 bits (535), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 132/348 (37%), Positives = 195/348 (56%), Gaps = 21/348 (6%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A  +G++PIIG   D  MQ +      G+     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYGTAHGSGVKPIIGA--DFKMQSD----EFGEE----LTQVTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L +   GY+ L  L+S+ YL    +    I  +WL E+ +EGLI+L+GG SG I R    
Sbjct: 55  LAADNVGYKNLTLLISKAYLRGHVQHYPVIDKAWLAEM-SEGLIVLSGGKSGEIGRGLLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
            + Q+ +  +  +K+ F DR Y+ L R  R  +       V+LA   +LP+VATN  +FL
Sbjct: 114 GNRQIVQGCVDFYKQHFPDRFYLELLRTGRPDEETYLHFAVELAEQQDLPVVATNEVVFL 173

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
           S + ++AH++ +A+     +    RP+  +P  YL+   EM  +F+D+PEALEN+VEIA+
Sbjct: 174 SPDLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAK 233

Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQD 336
           RC+  +++    LP F  +       +E   L  K+  GLE RL         +     +
Sbjct: 234 RCNVTVRLGEYFLPAFPTE-----GMKETEFLVMKSREGLEERLEFLFPDEEERKRRRPE 288

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
           Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 289 YDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGS 336


>gi|19548850|gb|AAL90822.1| polymerase III subunit alpha [Escherichia coli]
          Length = 215

 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 103/214 (48%), Positives = 146/214 (68%), Gaps = 6/214 (2%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   ++ +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRGVK-----VDLSLIPFDD 605
           +TLT++  +L+ + +R  K     +D++ IP DD
Sbjct: 180 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 213


>gi|223036106|gb|ACM78706.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. SA0606-03S]
 gi|223036114|gb|ACM78710.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. SA0606-63]
          Length = 336

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 130/348 (37%), Positives = 195/348 (56%), Gaps = 21/348 (6%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A  +G++PIIG   D  MQ +      G+     +  + +
Sbjct: 5   PAMALTDFTNLCGLVKFYGTAHGSGVKPIIGA--DFKMQSD----EFGEE----LTQLTV 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L +   GY+ L  L+S+ YL    +    I  +WL E+ +EGLI+L+G  +G I +A   
Sbjct: 55  LAADNAGYKNLTLLISKAYLRGHVQHQPVIDRAWLAEM-SEGLIVLSGAKNGDIGKALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
            + ++ E  +  +K+ F DR Y+ L R  R  +       + LA  H+LP+VATN  +FL
Sbjct: 114 GNRKLVESCVEFYKQHFQDRFYLELIRTGRPDEETYLHFAIDLAEQHDLPVVATNEVVFL 173

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
           S + ++AH++ +A+     +    RP+  +P  YL+   EM  +F+D+PEALEN+VEIA+
Sbjct: 174 SADLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAK 233

Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQD 336
           RC+  +++    LP F  +       EE   L  K+  GLE RL         +     +
Sbjct: 234 RCNVTVRLGEYFLPAFPTE-----GMEETEFLVMKSREGLEERLEFLFPNEEERKKRRPE 288

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
           Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 289 YDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGAGS 336


>gi|312271566|gb|ADQ56138.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. HB0308-1B5]
          Length = 336

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 133/350 (38%), Positives = 193/350 (55%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   GI+PIIG    +          Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGIKPIIGADFML----------QSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    +  +WL +   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNIGYKNLTLLISKAYLRGHVQHQPVLDKAWLID-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  EK L  ++  F D  Y+ L R    D   ES +   + +A  +ELP+VATN  +
Sbjct: 114 GNQQQVEKCLEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYELPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL+  +EM  +F+D+PEALEN+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRTEAEMCELFADIPEALENSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F   E   I    E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNF-PTEGMAI----EDFLVMKSREGLEDRLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036124|gb|ACM78715.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. SA0706-05S]
          Length = 336

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 130/348 (37%), Positives = 195/348 (56%), Gaps = 21/348 (6%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A  +G++PIIG   D  MQ +      G+     +  + +
Sbjct: 5   PAMALTDFTNLCGLVKFYGTAHGSGVKPIIGA--DFKMQSD----EFGEE----LTQLTV 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L +   GY+ L  L+S+ YL    +    I  +WL E+ +EGLI+L+G  +G I +A   
Sbjct: 55  LAADNAGYKNLTLLISKAYLRGHVQHQPVIDRAWLAEM-SEGLIVLSGAKNGDIGKALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
            + ++ E  +  +K+ F DR Y+ L R  R  +       + LA  H+LP+VATN  +FL
Sbjct: 114 GNRKLVESCVEFYKQHFPDRFYLELIRTGRPDEETYLHFAIDLAEQHDLPVVATNEVVFL 173

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
           S + ++AH++ +A+     +    RP+  +P  YL+   EM  +F+D+PEALEN+VEIA+
Sbjct: 174 SADLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAK 233

Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQD 336
           RC+  +++    LP F  +       EE   L  K+  GLE RL         +     +
Sbjct: 234 RCNVTVRLGEYFLPAFPTE-----GMEETEFLVMKSREGLEERLEFLFPDEEERKKRRPE 288

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
           Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 289 YDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGAGS 336


>gi|223930121|gb|ACN24703.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930193|gb|ACN24751.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930208|gb|ACN24761.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930217|gb|ACN24767.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930283|gb|ACN24811.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930286|gb|ACN24813.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930316|gb|ACN24833.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930340|gb|ACN24849.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930346|gb|ACN24853.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930352|gb|ACN24857.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930358|gb|ACN24861.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930382|gb|ACN24877.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930460|gb|ACN24929.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930469|gb|ACN24935.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930472|gb|ACN24937.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930475|gb|ACN24939.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930484|gb|ACN24945.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 117/350 (33%), Positives = 199/350 (56%), Gaps = 9/350 (2%)

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A
Sbjct: 1    GVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASA 60

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++ 
Sbjct: 61   NQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYI 120

Query: 807  QDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +A+ + I ++ PS+N     F++  +  I YS   I+ V T     I+      PF   
Sbjct: 121  TEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDF 180

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N
Sbjct: 181  FDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMN 238

Query: 926  IFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +FA E   F  K+          S+  + E E+   G Y S HP+  Y+  L+ + I   
Sbjct: 239  LFA-EDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAIT-- 295

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 296  -RLANLFSGKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|223930157|gb|ACN24727.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 202/351 (57%), Gaps = 11/351 (3%)

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A
Sbjct: 1    GVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASA 60

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++ 
Sbjct: 61   NQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYI 120

Query: 807  QDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +A+ + I ++ PS+N     F++  +  I YS   I+ V T     I+      PF   
Sbjct: 121  TEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDF 180

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N
Sbjct: 181  FDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMN 238

Query: 926  IFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +FA E   F  K+          S+  + E E+   G Y S HP+  Y+  L+ + I   
Sbjct: 239  LFA-EDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAIT-- 295

Query: 984  EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +A +  G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 296  --RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|223930109|gb|ACN24695.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930130|gb|ACN24709.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930166|gb|ACN24733.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930199|gb|ACN24755.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930205|gb|ACN24759.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930262|gb|ACN24797.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930322|gb|ACN24837.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930343|gb|ACN24851.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930373|gb|ACN24871.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930379|gb|ACN24875.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930409|gb|ACN24895.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930412|gb|ACN24897.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930418|gb|ACN24901.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930421|gb|ACN24903.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930424|gb|ACN24905.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930448|gb|ACN24921.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930466|gb|ACN24933.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 202/351 (57%), Gaps = 11/351 (3%)

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A
Sbjct: 1    GVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASA 60

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++ 
Sbjct: 61   NQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYI 120

Query: 807  QDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +A+ + I ++ PS+N     F++  +  I YS   I+ V T     I+      PF   
Sbjct: 121  TEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDF 180

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N
Sbjct: 181  FDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMN 238

Query: 926  IFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +FA E   F  K+          S+  + E E+   G Y S HP+  Y+  L+ + I   
Sbjct: 239  LFA-EDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAIT-- 295

Query: 984  EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +A +  G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 296  --RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|223930400|gb|ACN24889.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930403|gb|ACN24891.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 202/351 (57%), Gaps = 11/351 (3%)

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A
Sbjct: 1    GVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASA 60

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++ 
Sbjct: 61   NQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYI 120

Query: 807  QDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +A+ + I ++ PS+N     F++  +  I YS   I+ V T     I+      PF   
Sbjct: 121  TEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDF 180

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N
Sbjct: 181  FDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMN 238

Query: 926  IFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +FA E   F  K+          S+  + E E+   G Y S HP+  Y+  L+ + I   
Sbjct: 239  LFA-EDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAIT-- 295

Query: 984  EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +A +  G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 296  --RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|223035994|gb|ACM78650.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. K0606-41]
          Length = 336

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 131/348 (37%), Positives = 195/348 (56%), Gaps = 21/348 (6%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A  +G++PIIG   D  MQ +      G+     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYGTAHGSGVKPIIGA--DFKMQSD----EFGEE----LTQVTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L +   GY+ L  L+S+ YL    +    I  +WL ++ +EGLI+L+GG SG I R    
Sbjct: 55  LAADNVGYKNLTLLISKAYLRGHVQHHPVIDKAWLAKM-SEGLIVLSGGKSGEIGRGLLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
            + Q+ +  +  +K+ F DR Y+ L R  R  +       V+LA   +LP+VATN  +FL
Sbjct: 114 GNRQIVQGCVDFYKQHFPDRFYLELLRTGRPDEETYLHFAVELAEQQDLPVVATNEVVFL 173

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
           S + ++AH++ +A+     +    RP+  +P  YL+   EM  +F+D+PEALEN+VEIA+
Sbjct: 174 SPDLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAK 233

Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQD 336
           RC+  +++    LP F  +       +E   L  K+  GLE RL         +     +
Sbjct: 234 RCNVTVRLGEYFLPAFPTE-----GMKETEFLVMKSREGLEERLEFLFPDEEERKRRRPE 288

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
           Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 289 YDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGS 336


>gi|218462029|ref|ZP_03502120.1| DNA polymerase III protein, alpha subunit [Rhizobium etli Kim 5]
          Length = 523

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 154/519 (29%), Positives = 255/519 (49%), Gaps = 33/519 (6%)

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKD---RPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            + L+   E     DV++A+     +SQ      P    + YLK+  EM+ IF D P+A+
Sbjct: 9   TSPLYHHPERRPLSDVVIAIREHVQISQAGFLLAPNA--ERYLKDSREMMRIFGDYPDAV 66

Query: 272 ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
           ENT     + +F L+      P       +D  +  +  L     AG   R   G   K 
Sbjct: 67  ENTQVFFGKLTFSLKELQHNYP-----PENDPGETPQQTLERLTRAGAARRYPGGVPPK- 120

Query: 332 YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
                  Q++D+EL +I    ++ YFL V   IQ A+ +   +  GRGS A SV  Y L 
Sbjct: 121 -----VAQQIDYELKLIGDKNYASYFLTVHRIIQHARYDLKVLCQGRGSAANSVICYCLE 175

Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
           IT++DP + +LLF+RF++ DR   PD D+DF  DRR+EVI+++  +YG E         +
Sbjct: 176 ITEVDPQKSTLLFDRFISMDRDEPPDIDVDFEHDRREEVIQFIYGRYGIEHAGLTAGVTT 235

Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDR 510
            + ++A R+V +A  +       +  L+        S   ++D D++     + DP    
Sbjct: 236 YRTRSAGREVAKAFGLSEDVQSAISSLVWG-----WSEDNLSDRDAKAAGLDVKDPLTQN 290

Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
           +L+ + +L G  RH + H  G VI    L ++VP+ +    D  + +++   ++   ++K
Sbjct: 291 VLQYASELLGFPRHLTQHVGGFVITRDRLDEVVPIMKTAMPDRYMIEWDKDDLDNVKILK 350

Query: 571 FDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH-----ETYHLLTTKGTLGIFQLE 624
            D L L  LT L+K+   L     VK  L+ +   +H       Y ++    TLG+FQ+E
Sbjct: 351 VDVLALGMLTCLRKAFSLLELHYDVKKTLADLGNREHGDEGKPVYEMMGRADTLGVFQIE 410

Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSI-HPL--ID 679
           S      L  ++P    D++  V++ RPGPI  D +  Y  R+  + + + + +P   ++
Sbjct: 411 SRAQMSMLPRLKPKIFYDLVIEVAIVRPGPIQGDMVHPYLKRREQRARNIPVKYPSKELE 470

Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
            +L+ T GV ++QEQ MQIA   +G+  +EAD LRRAM 
Sbjct: 471 AVLERTLGVPLFQEQAMQIAITAAGFRPAEADKLRRAMA 509


>gi|223930394|gb|ACN24885.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 202/351 (57%), Gaps = 11/351 (3%)

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A
Sbjct: 1    GVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASA 60

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++ 
Sbjct: 61   NQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYI 120

Query: 807  QDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +A+ + I ++ PS+N     F++  +  I YS   I+ V T     I+      PF   
Sbjct: 121  TEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDF 180

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N
Sbjct: 181  FDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMN 238

Query: 926  IFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +FA E   F  K+          S+  + E E+   G Y S HP+  Y+  L+ + I   
Sbjct: 239  LFA-EDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAIT-- 295

Query: 984  EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +A +  G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 296  --RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|223930145|gb|ACN24719.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930148|gb|ACN24721.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930172|gb|ACN24737.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930220|gb|ACN24769.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930256|gb|ACN24793.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930259|gb|ACN24795.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930298|gb|ACN24821.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930328|gb|ACN24841.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930331|gb|ACN24843.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930334|gb|ACN24845.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930364|gb|ACN24865.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930397|gb|ACN24887.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930427|gb|ACN24907.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930430|gb|ACN24909.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930433|gb|ACN24911.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930436|gb|ACN24913.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930439|gb|ACN24915.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930442|gb|ACN24917.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930445|gb|ACN24919.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 202/351 (57%), Gaps = 11/351 (3%)

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A
Sbjct: 1    GVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASA 60

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++ 
Sbjct: 61   NQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYI 120

Query: 807  QDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +A+ + I ++ PS+N     F++  +  I YS   I+ V T     I+      PF   
Sbjct: 121  TEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDF 180

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N
Sbjct: 181  FDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMN 238

Query: 926  IFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +FA E   F  K+          S+  + E E+   G Y S HP+  Y+  L+ + I   
Sbjct: 239  LFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAIT-- 295

Query: 984  EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +A +  G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 296  --RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|223930112|gb|ACN24697.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930118|gb|ACN24701.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930124|gb|ACN24705.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930127|gb|ACN24707.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930133|gb|ACN24711.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930136|gb|ACN24713.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930139|gb|ACN24715.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930142|gb|ACN24717.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930151|gb|ACN24723.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930154|gb|ACN24725.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930160|gb|ACN24729.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930163|gb|ACN24731.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930169|gb|ACN24735.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930178|gb|ACN24741.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930181|gb|ACN24743.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930184|gb|ACN24745.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930187|gb|ACN24747.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930190|gb|ACN24749.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930196|gb|ACN24753.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930202|gb|ACN24757.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930214|gb|ACN24765.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930223|gb|ACN24771.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930226|gb|ACN24773.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930229|gb|ACN24775.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930232|gb|ACN24777.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930235|gb|ACN24779.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930238|gb|ACN24781.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930241|gb|ACN24783.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930244|gb|ACN24785.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930247|gb|ACN24787.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930250|gb|ACN24789.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930253|gb|ACN24791.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930265|gb|ACN24799.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930268|gb|ACN24801.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930271|gb|ACN24803.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930274|gb|ACN24805.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930277|gb|ACN24807.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930280|gb|ACN24809.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930289|gb|ACN24815.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930292|gb|ACN24817.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930295|gb|ACN24819.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930301|gb|ACN24823.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930304|gb|ACN24825.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930307|gb|ACN24827.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930310|gb|ACN24829.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930313|gb|ACN24831.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930319|gb|ACN24835.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930325|gb|ACN24839.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930337|gb|ACN24847.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930349|gb|ACN24855.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930355|gb|ACN24859.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930361|gb|ACN24863.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930367|gb|ACN24867.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930370|gb|ACN24869.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930376|gb|ACN24873.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930385|gb|ACN24879.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930388|gb|ACN24881.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930391|gb|ACN24883.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930415|gb|ACN24899.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930451|gb|ACN24923.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930454|gb|ACN24925.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930457|gb|ACN24927.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930463|gb|ACN24931.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930478|gb|ACN24941.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930481|gb|ACN24943.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 202/351 (57%), Gaps = 11/351 (3%)

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A
Sbjct: 1    GVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASA 60

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++ 
Sbjct: 61   NQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYI 120

Query: 807  QDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +A+ + I ++ PS+N     F++  +  I YS   I+ V T     I+      PF   
Sbjct: 121  TEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDF 180

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N
Sbjct: 181  FDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMN 238

Query: 926  IFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +FA E   F  K+          S+  + E E+   G Y S HP+  Y+  L+ + I   
Sbjct: 239  LFA-EDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAIT-- 295

Query: 984  EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +A +  G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 296  --RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|223930211|gb|ACN24763.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 202/351 (57%), Gaps = 11/351 (3%)

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A
Sbjct: 1    GVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASA 60

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++ 
Sbjct: 61   NQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYI 120

Query: 807  QDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +A+ + I ++ PS+N     F++  +  I YS   I+ V T     I+      PF   
Sbjct: 121  TEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDF 180

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N
Sbjct: 181  FDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMN 238

Query: 926  IFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +FA E   F  K+          S+  + E E+   G Y S HP+  Y+  L+ + I   
Sbjct: 239  LFA-EDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAIT-- 295

Query: 984  EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +A +  G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 296  --RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|157284469|gb|ABV31082.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
 gi|157284471|gb|ABV31083.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
 gi|157284475|gb|ABV31085.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
 gi|157284477|gb|ABV31086.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
 gi|157284481|gb|ABV31088.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
          Length = 339

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/353 (36%), Positives = 193/353 (54%), Gaps = 25/353 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ A
Sbjct: 287 PEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVA 339


>gi|223930175|gb|ACN24739.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 202/351 (57%), Gaps = 11/351 (3%)

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A
Sbjct: 1    GVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASA 60

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++ 
Sbjct: 61   NQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYI 120

Query: 807  QDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +A+ + I ++ PS+N     F++  +  I YS   I+ V T     I+      PF   
Sbjct: 121  TEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDF 180

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N
Sbjct: 181  FDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDVVLQYISLLGED--SKGMN 238

Query: 926  IFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +FA E   F  K+          S+  + E E+   G Y S HP+  Y+  L+ + I   
Sbjct: 239  LFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAIT-- 295

Query: 984  EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +A +  G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 296  --RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|223930115|gb|ACN24699.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 202/351 (57%), Gaps = 11/351 (3%)

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A
Sbjct: 1    GVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASA 60

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++ 
Sbjct: 61   NQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYI 120

Query: 807  QDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +A+ + I ++ PS+N     F++  +  I YS   I+ V T     I+      PF   
Sbjct: 121  TEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKVPFRDF 180

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N
Sbjct: 181  FDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMN 238

Query: 926  IFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +FA E   F  K+          S+  + E E+   G Y S HP+  Y+  L+ + I   
Sbjct: 239  LFA-EDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAIT-- 295

Query: 984  EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +A +  G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 296  --RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|157284473|gb|ABV31084.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
          Length = 339

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/353 (36%), Positives = 193/353 (54%), Gaps = 25/353 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDDLTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGHTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ A
Sbjct: 287 PEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVA 339


>gi|261349359|gb|ACX71239.1| DNA polymerase III alpha subunit [Streptococcus suis]
          Length = 318

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 113/321 (35%), Positives = 184/321 (57%), Gaps = 9/321 (2%)

Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
           ++D++ I  +D +T  L     T GIFQ E  G    L  ++P   EDI+A  SL RPG 
Sbjct: 7   EIDIAKIDLEDKKTLELFAAGRTKGIFQFEQPGAISVLRRVKPGRFEDIVATTSLNRPGA 66

Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            D    +  RK+G+E +  + P I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LR
Sbjct: 67  SDYSDNFVKRKHGQETVDLLDPTIAPILQPTYGIMLYQEQVMQIAQVYAGFTLGKADLLR 126

Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           RAM KK  +EM   +  F+ GA KNG ++  A  IF ++AKFA YGFN+SHA AY+ +++
Sbjct: 127 RAMSKKNAQEMQAMEAEFLQGALKNGHAEESAREIFGMMAKFAGYGFNRSHAYAYSALAF 186

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
           Q A+ K+HY   F    +            + +DA QF+ ++   ++N      K   ++
Sbjct: 187 QMAYFKSHYTDVFFDVMLN------HSSSAYIEDAMQFDFEVARLTINNIPYHDKFDKSK 240

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
           +Y  L  +KG+    A  I++    +P+ S+EDF  R+      + +L  L+  G  D F
Sbjct: 241 VYLGLKTLKGLPKDLALWILD---HRPYKSVEDFILRLPDNFKKKDLLIPLIQIGLFDDF 297

Query: 895 GYSRMQLLQSLDNIQKYAQWV 915
             +R +++++LDN+  +A+ +
Sbjct: 298 DANRKKIIENLDNLFVFAEAI 318


>gi|223036026|gb|ACM78666.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. PS0705-3A4]
          Length = 336

 Score =  207 bits (527), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 131/348 (37%), Positives = 195/348 (56%), Gaps = 21/348 (6%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A ++G++PIIG   D  MQ +      G+     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYGTAHSSGVKPIIGA--DFKMQSD----EFGEE----LTQVTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L +   GY+ L  L+S+ YL    +    I  +WL E+ +EGLI+L+GG SG I R    
Sbjct: 55  LAADNVGYKNLTLLISKAYLRGHVQHHPVIDKAWLAEM-SEGLIVLSGGKSGEIGRGLLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
            + Q+ +  +  +K+ F DR Y+ L R  R  +       V+LA   +LP+VATN  +FL
Sbjct: 114 GNRQIVQGCVDFYKQHFPDRFYLELLRTGRPDEETYLHFAVELAEQQDLPVVATNEVVFL 173

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
           S + ++AH++ +A+     +    RP+  +   YL+   EM  +F+D+PEALEN+VEIA+
Sbjct: 174 SPDLFDAHEIRVAIHDGYTLEDPRRPKNYSQQQYLRTEEEMCELFADIPEALENSVEIAK 233

Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQD 336
           RC+  +++    LP F  +       +E   L  K+  GLE RL         +     +
Sbjct: 234 RCNVTVRLGEYFLPAFPTE-----GMKETEFLVMKSREGLEERLEFLFPDEEERKRRRPE 288

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
           Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 289 YDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGS 336


>gi|254247156|ref|ZP_04940477.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
 gi|124871932|gb|EAY63648.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
          Length = 658

 Score =  207 bits (527), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 171/615 (27%), Positives = 275/615 (44%), Gaps = 62/615 (10%)

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            +I+++  KYG +R A      + + +  LR+ G+AL +    VDR+ K       H    
Sbjct: 1    MIQHIYKKYGKDRAALAAAVSTYRPRGVLRETGKALSVDPMLVDRVAK------GH---- 50

Query: 490  QAIADDSR-----FREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                D SR     F    L  A P +    E++ +L    RH S H+ G VI    L++L
Sbjct: 51   -RWFDGSRDLLQQFASTGLDPATPIIQTWAELAGRLLNFPRHLSQHSGGFVISRGKLTRL 109

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVD---- 597
            VP+         V Q++   +E  GL+K D L L  L+ L ++ D   A RG   D    
Sbjct: 110  VPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPAKDGKPF 169

Query: 598  -LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             L  IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI 
Sbjct: 170  TLKHIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRNYYDLVVQVSIVRPGPIQ 229

Query: 657  NIVVYNNRKN-----GKEKIVSIHP--LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
               V+   K      G+EK    +P   +  +L  T GV I+QEQVMQIA + +G++  E
Sbjct: 230  GGAVHPYLKRRRIVAGEEKGEVTYPSDALKEVLVRTLGVPIFQEQVMQIAIVAAGFTPGE 289

Query: 710  ADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD LRRAM   K K  ++K +++ ISG  +   ++  A  IFE +  F +YGF +SHAA+
Sbjct: 290  ADDLRRAMAAWKRKGNLEKYQDKIISGMLERNYTREFAEQIFEQIKGFGEYGFPESHAAS 349

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +A ++Y ++W+K H P  FLAA +  +        +  QDA++  ++++P  V     + 
Sbjct: 350  FAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHRVKVLPIDVTQSGWEA 409

Query: 829  KV----------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
             +          G   +   L+ ++G+    AR I  A    PFDS++    R    +L 
Sbjct: 410  SLEALPDQPPPHGQPAVRLGLSLVRGLSEAAARRIEAARTAGPFDSVDSLARRA---QLE 466

Query: 879  RR-VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            RR +             G+ R  L Q++                   ++ A       D+
Sbjct: 467  RRDLEALAAANALATLAGHRRDALWQAVA-------------AAPERDLLA---AAPIDE 510

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
            +        + +     +    G   + HP+ + +P LR   +    E      G   R 
Sbjct: 511  VEQPALGAPSEADDILADYHTTGLTLNRHPVALLRPALRAQRLSSAAELRDRPDGRLARA 570

Query: 998  AAMVVSKQQKKTRKG 1012
              +V+++Q   T KG
Sbjct: 571  CGLVIARQMPGTAKG 585


>gi|223036206|gb|ACM78756.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036360|gb|ACM78833.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  207 bits (526), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 130/350 (37%), Positives = 191/350 (54%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   GI+PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGIKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036080|gb|ACM78693.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036082|gb|ACM78694.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036084|gb|ACM78695.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  207 bits (526), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 191/350 (54%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 SEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036338|gb|ACM78822.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 191/350 (54%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAKKYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223035972|gb|ACM78639.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036044|gb|ACM78675.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036066|gb|ACM78686.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036068|gb|ACM78687.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036104|gb|ACM78705.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036110|gb|ACM78708.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036138|gb|ACM78722.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036156|gb|ACM78731.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036214|gb|ACM78760.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036246|gb|ACM78776.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036248|gb|ACM78777.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036280|gb|ACM78793.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036330|gb|ACM78818.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036376|gb|ACM78841.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 191/350 (54%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|157284483|gb|ABV31089.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
          Length = 339

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/353 (36%), Positives = 192/353 (54%), Gaps = 25/353 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++P IG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPFIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ A
Sbjct: 287 PEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVA 339


>gi|223036038|gb|ACM78672.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036170|gb|ACM78738.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 191/350 (54%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAELYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPDVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036100|gb|ACM78703.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036256|gb|ACM78781.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036272|gb|ACM78789.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036294|gb|ACM78800.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036344|gb|ACM78825.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036346|gb|ACM78826.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036350|gb|ACM78828.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 191/350 (54%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPDVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036056|gb|ACM78681.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 191/350 (54%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLYFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223035960|gb|ACM78633.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
 gi|223035964|gb|ACM78635.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035966|gb|ACM78636.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035976|gb|ACM78641.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035978|gb|ACM78642.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035982|gb|ACM78644.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035984|gb|ACM78645.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035986|gb|ACM78646.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035990|gb|ACM78648.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035998|gb|ACM78652.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036002|gb|ACM78654.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O139]
 gi|223036004|gb|ACM78655.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
 gi|223036006|gb|ACM78656.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O395]
 gi|223036008|gb|ACM78657.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036010|gb|ACM78658.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036012|gb|ACM78659.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036016|gb|ACM78661.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036018|gb|ACM78662.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036022|gb|ACM78664.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036024|gb|ACM78665.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036028|gb|ACM78667.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036040|gb|ACM78673.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036042|gb|ACM78674.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036046|gb|ACM78676.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036048|gb|ACM78677.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036050|gb|ACM78678.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036054|gb|ACM78680.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036060|gb|ACM78683.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036062|gb|ACM78684.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036064|gb|ACM78685.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036070|gb|ACM78688.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036076|gb|ACM78691.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036078|gb|ACM78692.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036086|gb|ACM78696.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036088|gb|ACM78697.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036092|gb|ACM78699.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036094|gb|ACM78700.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036102|gb|ACM78704.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036108|gb|ACM78707.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036112|gb|ACM78709.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036116|gb|ACM78711.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036118|gb|ACM78712.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036120|gb|ACM78713.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036122|gb|ACM78714.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036126|gb|ACM78716.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036128|gb|ACM78717.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036130|gb|ACM78718.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036132|gb|ACM78719.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036134|gb|ACM78720.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036136|gb|ACM78721.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036140|gb|ACM78723.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036142|gb|ACM78724.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036144|gb|ACM78725.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036146|gb|ACM78726.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036154|gb|ACM78730.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036158|gb|ACM78732.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036160|gb|ACM78733.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036162|gb|ACM78734.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036164|gb|ACM78735.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036166|gb|ACM78736.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036168|gb|ACM78737.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036172|gb|ACM78739.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036174|gb|ACM78740.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036176|gb|ACM78741.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036178|gb|ACM78742.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036180|gb|ACM78743.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036182|gb|ACM78744.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036184|gb|ACM78745.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036190|gb|ACM78748.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036192|gb|ACM78749.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036194|gb|ACM78750.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036196|gb|ACM78751.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036198|gb|ACM78752.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036200|gb|ACM78753.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036202|gb|ACM78754.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036204|gb|ACM78755.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036208|gb|ACM78757.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036210|gb|ACM78758.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036212|gb|ACM78759.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036216|gb|ACM78761.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036218|gb|ACM78762.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036222|gb|ACM78764.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036226|gb|ACM78766.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036228|gb|ACM78767.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036230|gb|ACM78768.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036236|gb|ACM78771.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036240|gb|ACM78773.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036242|gb|ACM78774.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036244|gb|ACM78775.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036252|gb|ACM78779.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036254|gb|ACM78780.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036258|gb|ACM78782.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036260|gb|ACM78783.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036262|gb|ACM78784.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036264|gb|ACM78785.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036266|gb|ACM78786.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036268|gb|ACM78787.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036270|gb|ACM78788.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036278|gb|ACM78792.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036282|gb|ACM78794.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036290|gb|ACM78798.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036296|gb|ACM78801.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036298|gb|ACM78802.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036300|gb|ACM78803.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036304|gb|ACM78805.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036306|gb|ACM78806.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036308|gb|ACM78807.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036310|gb|ACM78808.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036312|gb|ACM78809.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036314|gb|ACM78810.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036316|gb|ACM78811.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036318|gb|ACM78812.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036320|gb|ACM78813.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036324|gb|ACM78815.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036326|gb|ACM78816.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036334|gb|ACM78820.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036354|gb|ACM78830.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036358|gb|ACM78832.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036364|gb|ACM78835.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036366|gb|ACM78836.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036368|gb|ACM78837.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036370|gb|ACM78838.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036378|gb|ACM78842.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 191/350 (54%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036284|gb|ACM78795.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036286|gb|ACM78796.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036288|gb|ACM78797.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 191/350 (54%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNIGYKNLTLLISKAYLRGHVQHQPVIDKTWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223035980|gb|ACM78643.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036052|gb|ACM78679.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036342|gb|ACM78824.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036356|gb|ACM78831.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 191/350 (54%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHIQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|157284479|gb|ABV31087.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
          Length = 339

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/353 (36%), Positives = 192/353 (54%), Gaps = 25/353 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+   R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLEAIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ A
Sbjct: 287 PEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVA 339


>gi|237800159|ref|ZP_04588620.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. oryzae
            str. 1_6]
 gi|331023016|gb|EGI03073.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. oryzae
            str. 1_6]
          Length = 451

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 114/329 (34%), Positives = 182/329 (55%), Gaps = 30/329 (9%)

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY ++SYQTAW+KTHYP  
Sbjct: 2    KQRGGFIDGCKTNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHYPAP 61

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGV 845
            F+AA ++ +M N +K+    ++ R   +++  P VNT    F V D+ RI Y L AIKGV
Sbjct: 62   FMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTVSDDGRILYGLGAIKGV 121

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG---------- 895
            G      I +A  + PF  L DFC+RVD K++N+R L+ L+ +GALD  G          
Sbjct: 122  GEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALDRLGPYFELEPKAY 181

Query: 896  -----YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF----SDKITLEKFSVE 946
                  +R  LL +L+   + A+   ++R + H ++F    G F    +D     + + E
Sbjct: 182  QANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFG---GLFVEADADVYASHRKTRE 238

Query: 947  NS-SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVS 1003
            +S   R   E+  LG Y +GHP+D Y+  +R+       + +  ++   +   +A ++++
Sbjct: 239  SSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRIIDLKPARDTQTVAGLIIA 294

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +  K +KG ++G++T  + +   EA+ F
Sbjct: 295  LRVMKNKKGDKMGFITLDDRSARIEASLF 323


>gi|223036188|gb|ACM78747.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/348 (36%), Positives = 189/348 (54%), Gaps = 21/348 (6%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHDCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
            + Q  E+ +  ++  F D  Y+ L R  R  +       + +A  ++LP+VATN  +F+
Sbjct: 114 GNQQQVERCVEFYQTHFADHFYLELIRTGRADEEXYLHFALDVAEQYDLPVVATNEVVFI 173

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
           +EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEIA+
Sbjct: 174 TEEXFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAK 233

Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQD 336
           RC+  +++    LP F            E+ L  K+  GLE RL         +     +
Sbjct: 234 RCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPE 288

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
           Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 289 YDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036058|gb|ACM78682.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 190/350 (54%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I   WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKEWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036034|gb|ACM78670.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. PS0705-5A3]
 gi|223036090|gb|ACM78698.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. SA0506-45]
          Length = 336

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 131/348 (37%), Positives = 194/348 (55%), Gaps = 21/348 (6%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG   D  MQ   +  ++       +  + +
Sbjct: 5   PAMALTDFTNLCGLVKFYGTAHNCGVKPIIGA--DFIMQSE-EFADE-------LTKLTV 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L +   GY+ L  L+S  YL    +    I  SWL +   EGLI+L+G  +G I +A   
Sbjct: 55  LATNNVGYKNLTLLISEAYLRGHVQHQPVIDKSWLIKYA-EGLIVLSGAKNGEIGKALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
            +  + +K +  ++  F DR Y+ L R +R  +       ++LA   +LP+VATN  +FL
Sbjct: 114 GNHALVDKCVEFYQTHFADRFYLELIRTNRADEETYLHFALELAENKQLPVVATNEVVFL 173

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
           +EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEALEN+VEIA+
Sbjct: 174 TEEFFEAHEIRVAIHDGYTMVDPRRPKNYSPQQYLRSEAEMCELFADIPEALENSVEIAK 233

Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---D 336
           RC+  +++    LP F  +       EE   L  K+  GLE RL          AQ   +
Sbjct: 234 RCNVTVRLGEYFLPAFPTE-----GMEETEYLVMKSKQGLEERLEFLFPDPEIRAQRRPE 288

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
           Y +RL  EL VI  M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 289 YDERLLIELEVINNMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223930406|gb|ACN24893.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 201/351 (57%), Gaps = 11/351 (3%)

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A
Sbjct: 1    GVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASA 60

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++ 
Sbjct: 61   NQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYI 120

Query: 807  QDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +A+ + I ++ PS+N     F++  +  I YS   I+ V T     I+      PF   
Sbjct: 121  TEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKVPFRDF 180

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DFC R+  K L+  VLE+LVF+G  D FG  R  +  ++D + +Y   + ++  +K  N
Sbjct: 181  FDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATISATIDAVLQYISLLGED--SKGMN 238

Query: 926  IFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +FA E   F  K+          S+  + E E+   G Y S HP+  Y+  L+ + I   
Sbjct: 239  LFA-EDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAIT-- 295

Query: 984  EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +A +  G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 296  --RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|223036020|gb|ACM78663.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036186|gb|ACM78746.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036234|gb|ACM78770.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036302|gb|ACM78804.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036352|gb|ACM78829.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 190/350 (54%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y  RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDDRLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036098|gb|ACM78702.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. SA0605-34]
          Length = 336

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 128/348 (36%), Positives = 194/348 (55%), Gaps = 21/348 (6%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   GI+PIIG   D  MQ   +  ++       +  + +
Sbjct: 5   PAMALTDFTNLCGLVKFYGAAHGNGIKPIIGA--DFKMQSP-EFGDE-------LTQLTV 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L +   GY+ L  L+S+ YL    +    I   WL E+ +EGLI+L+G  +G I +A   
Sbjct: 55  LAADNTGYKNLTLLISKAYLRGHVQHQPVIDKEWLIEL-SEGLILLSGARNGEIGKALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
            + ++ E  +  +++ F DR Y+ L R  R  +       ++LA  ++LP+VATN  +F+
Sbjct: 114 GNQKLVESCVAFYQQHFADRFYLELIRTGRSDEETYLHFAIELAEQYDLPVVATNEVVFI 173

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            +E ++AH++ +A+     +    RP+  +P  YL+   EM  +F+D+PEALEN+VEIA+
Sbjct: 174 GQELFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAK 233

Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---D 336
           RC+  +++    LP F  +        E   L  K+  GLE RL          AQ   +
Sbjct: 234 RCNVTVRLWEYFLPAFPTE-----GMAETEFLVMKSKEGLEERLEFLFPDPEIRAQRRPE 288

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
           Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 289 YDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGS 336


>gi|223035968|gb|ACM78637.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036340|gb|ACM78823.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 191/350 (54%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEELFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036220|gb|ACM78763.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036232|gb|ACM78769.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036238|gb|ACM78772.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036250|gb|ACM78778.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036292|gb|ACM78799.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036322|gb|ACM78814.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036328|gb|ACM78817.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036348|gb|ACM78827.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 190/350 (54%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++  EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEVEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036150|gb|ACM78728.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 190/350 (54%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNIGYKNLTLLISKAYLRGHVQHQPVIDKTWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++  EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEVEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036096|gb|ACM78701.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. SA0605-25]
          Length = 336

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 130/353 (36%), Positives = 193/353 (54%), Gaps = 31/353 (8%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQ-----DNLKMTNQGKTPFPTV 96
           PA+A+TD  NL   ++F   A   GI+PIIG   D  MQ     D+L             
Sbjct: 5   PAMALTDFTNLCGLVKFYGAAHGNGIKPIIGA--DFKMQSPEFGDDLT------------ 50

Query: 97  PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
             + +L +   GY+ L  L+S+ YL    +    I   WL E+ +EGLI+L+G  +G I 
Sbjct: 51  -QLTVLAADNTGYKNLTLLISKAYLRGHVQHQPVIDKEWLIEL-SEGLILLSGARNGEIG 108

Query: 157 RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATN 215
           +A    + ++ E  +  +++ F DR Y+ L R  R  +       ++LA  ++LP+VATN
Sbjct: 109 KALLKGNQKLVESCVAFYQQHFADRFYLELIRTGRSDEETYLHFAIELAEQYDLPVVATN 168

Query: 216 NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENT 274
             +F+ +E ++AH++ +A+     +    RP+  +P  YL+   EM  +F+D+PEALEN+
Sbjct: 169 EVVFIGQELFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENS 228

Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
           VEIA+RC+  +++    LP F  +        E   L  K+  GLE RL          A
Sbjct: 229 VEIAKRCNVTVRLWEYFLPAFPTE-----GMAETEFLVMKSKEGLEERLEFLFPDPEIRA 283

Query: 335 Q---DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
           Q   +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 284 QRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGS 336


>gi|223036014|gb|ACM78660.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036332|gb|ACM78819.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 128/350 (36%), Positives = 191/350 (54%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFIL----------QSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036148|gb|ACM78727.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 128/350 (36%), Positives = 191/350 (54%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++E+ +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEDSFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|325522046|gb|EGD00720.1| DNA polymerase III, alpha subunit [Burkholderia sp. TJI49]
          Length = 544

 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 174/581 (29%), Positives = 270/581 (46%), Gaps = 65/581 (11%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AAG+ 
Sbjct: 10  PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAAGLP 69

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL--LVSTAEGYQRLIELVSRMYLLDQGK 126
            IIG    +   D               P+I    L    +GY  L ELVS +  +   K
Sbjct: 70  LIIGSHFRLTAADG-------------APAIAFSALAMNRDGYGNLCELVS-LGRMRGKK 115

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            S R+    L++       +        I    F  + Q  + ++  F ++FGDR +V L
Sbjct: 116 GSYRLAPRDLEQPDAPFTHLRGLPDCIAILSPDFPANEQRLDAQVEWFARVFGDRAWVAL 175

Query: 187 QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             H R  D      V ++A  H +P+VAT+  L          DVL ++     VS+   
Sbjct: 176 TLHARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTSIRLGRPVSECGY 235

Query: 246 PRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             + P  + +L++R  + +++     ALE TV +ARRC+F L               DD+
Sbjct: 236 -ELAPNAERHLRSRLRLANLYP--AGALEETVRVARRCTFSL---------------DDL 277

Query: 304 QKEEENE-----------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           + E  +E           LR +   G + R   G         D + +++ EL +IA + 
Sbjct: 278 KYEYPDEVVPAGYDVATYLREQTYIGAQRRFPAGIPV------DVQAQIEHELQLIAELN 331

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           +  YFL V D +Q+A++N I +  GRGS A S   Y L +T++DP R S+LFERF++ +R
Sbjct: 332 YEAYFLTVYDIVQFARQNGI-LCQGRGSAANSAVCYCLGMTEVDPSRQSMLFERFMSKER 390

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
              PD D+DF   RR+EV++Y+  KYG +R A      + + ++ALR+ G+AL +  + V
Sbjct: 391 NEPPDIDVDFEHQRREEVMQYIYRKYGRDRAALTAAVSTYRPRSALREAGKALGVDPAIV 450

Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV---DRLLEISQKLEGLYRHASTHA 529
           DR+ K      +    LQ      RF EA L DP      +    + +L G  RH S H+
Sbjct: 451 DRVAKSHHWFDSRADLLQ------RFAEAGL-DPEAPLNQQWAAFAAQLLGYPRHLSQHS 503

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            G VI    L++LVP+      D  + Q++   IE  G++K
Sbjct: 504 GGFVISRGKLTRLVPVENAAMEDRTIIQWDKDDIEALGILK 544


>gi|223036072|gb|ACM78689.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036074|gb|ACM78690.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 128/350 (36%), Positives = 191/350 (54%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG +G + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKNGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223035970|gb|ACM78638.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035974|gb|ACM78640.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035988|gb|ACM78647.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036030|gb|ACM78668.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036152|gb|ACM78729.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036274|gb|ACM78790.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036276|gb|ACM78791.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036362|gb|ACM78834.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036372|gb|ACM78839.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036374|gb|ACM78840.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 128/350 (36%), Positives = 190/350 (54%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG  G + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKRGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036036|gb|ACM78671.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  204 bits (520), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 128/350 (36%), Positives = 191/350 (54%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F +  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFAEHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036224|gb|ACM78765.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036336|gb|ACM78821.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  204 bits (519), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 128/350 (36%), Positives = 190/350 (54%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG  G + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKRGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|156069377|gb|ABU44601.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
          Length = 185

 Score =  204 bits (518), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 132/190 (69%), Gaps = 8/190 (4%)

Query: 266 DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA- 324
           D+PEALEN+VEIA+RC+  +++    LP F  +       EE   L  K+  GLE RL  
Sbjct: 1   DIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMEETEFLVMKSREGLEERLEF 55

Query: 325 --QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                  +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGA
Sbjct: 56  LFPDVEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGA 115

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
           GS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + 
Sbjct: 116 GSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDA 175

Query: 443 VAQIITFGSL 452
           V+QIITFG++
Sbjct: 176 VSQIITFGTM 185


>gi|156069319|gb|ABU44572.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069321|gb|ABU44573.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069323|gb|ABU44574.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069325|gb|ABU44575.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069327|gb|ABU44576.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069329|gb|ABU44577.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069331|gb|ABU44578.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069333|gb|ABU44579.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069335|gb|ABU44580.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069337|gb|ABU44581.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069339|gb|ABU44582.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069357|gb|ABU44591.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|193221941|gb|ACF16335.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|193221943|gb|ACF16336.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
          Length = 185

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 132/190 (69%), Gaps = 8/190 (4%)

Query: 266 DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA- 324
           D+PEALEN+VEIA+RC+  +++    LP F  +       EE   L  K+  GLE RL  
Sbjct: 1   DIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMEETEFLVMKSREGLEERLEF 55

Query: 325 --QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                  +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGA
Sbjct: 56  LFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGA 115

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
           GS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + 
Sbjct: 116 GSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDA 175

Query: 443 VAQIITFGSL 452
           V+QIITFG++
Sbjct: 176 VSQIITFGTM 185


>gi|223035962|gb|ACM78634.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/350 (36%), Positives = 190/350 (54%), Gaps = 25/350 (7%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +  + L
Sbjct: 5   PAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDELTKLTL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + RA   
Sbjct: 55  LAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
            + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 114 GNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 171

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++E  +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 172 FITEGSFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 231

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 232 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 286

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 287 PEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|156069341|gb|ABU44583.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069343|gb|ABU44584.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069345|gb|ABU44585.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069347|gb|ABU44586.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069349|gb|ABU44587.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069351|gb|ABU44588.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069353|gb|ABU44589.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069355|gb|ABU44590.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069359|gb|ABU44592.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069361|gb|ABU44593.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069363|gb|ABU44594.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069365|gb|ABU44595.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069367|gb|ABU44596.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069369|gb|ABU44597.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069371|gb|ABU44598.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069373|gb|ABU44599.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069375|gb|ABU44600.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069379|gb|ABU44602.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069381|gb|ABU44603.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069383|gb|ABU44604.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069385|gb|ABU44605.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069387|gb|ABU44606.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|193221945|gb|ACF16337.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
          Length = 185

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 132/190 (69%), Gaps = 8/190 (4%)

Query: 266 DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA- 324
           D+PEALEN+VEIA+RC+  +++    LP F  +       EE   L  K+  GLE RL  
Sbjct: 1   DIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMEETEFLVMKSREGLEERLEF 55

Query: 325 --QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                  +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGA
Sbjct: 56  LFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGA 115

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
           GS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + 
Sbjct: 116 GSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDA 175

Query: 443 VAQIITFGSL 452
           V+QIITFG++
Sbjct: 176 VSQIITFGTM 185


>gi|218678990|ref|ZP_03526887.1| DNA polymerase III, alpha subunit [Rhizobium etli CIAT 894]
          Length = 443

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/380 (32%), Positives = 200/380 (52%), Gaps = 10/380 (2%)

Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
           L+D  +   L+++++L G  RH S H  G V+    L +LVP+     +D  V +++   
Sbjct: 16  LSDRRLRLALDLARQLMGAPRHLSQHPGGFVLTHDRLDELVPIEPAAMADRQVIEWDKDD 75

Query: 563 IEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
           I+    +K D L L  L+ +++ LD LA  +G+ +DL+ IP +D  TY ++    TLG F
Sbjct: 76  IDTLRFMKVDVLALGMLSCMKRGLDMLADHKGINLDLATIPAEDPRTYAMIRRADTLGTF 135

Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLID 679
           Q+ES      L  ++P    D++  V++ RPGPI  D +  Y  R+ G E +V   P ++
Sbjct: 136 QIESRAQMSMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRRREGLEPVVFPKPELE 195

Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASK 738
            +L +T GV ++QEQ M++A   +G++  EAD+LR++M   K    +   KE+ I G   
Sbjct: 196 KVLGKTLGVPLFQEQAMRVAIECAGFTPGEADMLRKSMATFKFTGGVSSFKEKLIKGMVD 255

Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
           NG  +  A   F+ L  F  YGF +SHAA++A+I+Y +AW+K  +P  F AA +  +   
Sbjct: 256 NGYQRDFAEATFKQLEGFGSYGFPESHAASFALIAYASAWLKCWHPDVFCAALLNAQPMG 315

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNR--IYYSLAAIKGVGTTTARH 852
                +  +DA +  I I P   N    D  +     D+R  +   L  +KG+       
Sbjct: 316 FYAPAQIVRDALEHGIDIRPVCANASRWDCTLEPTDDDSRFAVRLGLRMVKGLANAHGAT 375

Query: 853 IMEASADKPFDSLEDFCSRV 872
           I+ A AD+PF S++D   R 
Sbjct: 376 IVGARADQPFASIDDLWRRA 395


>gi|156069389|gb|ABU44607.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
          Length = 185

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 102/190 (53%), Positives = 131/190 (68%), Gaps = 8/190 (4%)

Query: 266 DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA- 324
           D+PEALEN+VEIA+RC+  +++    LP F  +       EE   L  K+  GLE RL  
Sbjct: 1   DIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMEETEFLVMKSREGLEERLEF 55

Query: 325 --QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                  +     +Y +R   EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGA
Sbjct: 56  LFPNEEERKKRRPEYDERFQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGA 115

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
           GS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + 
Sbjct: 116 GSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDA 175

Query: 443 VAQIITFGSL 452
           V+QIITFG++
Sbjct: 176 VSQIITFGTM 185


>gi|325973200|ref|YP_004250264.1| DNA polymerase III subunit alpha [Mycoplasma suis str. Illinois]
 gi|323651802|gb|ADX97884.1| DNA polymerase III, alpha subunit [Mycoplasma suis str. Illinois]
          Length = 826

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 156/591 (26%), Positives = 275/591 (46%), Gaps = 73/591 (12%)

Query: 212 VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR--PRVTPDHYLKNRSEMVSIFSDLPE 269
           ++   +LFL EEDY+   ++ ++ + +  S++      +   + L N SE  ++     +
Sbjct: 142 ISVRENLFLKEEDYDLFALVSSLKNKSSFSRELELNSHLKNSYLLNNYSENNNV-----Q 196

Query: 270 ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            ++N +++ + C+F        L  F        +K +  E+     + LE  + +    
Sbjct: 197 RIKNLIKLLKECNFYSLREKSQLSLF--------KKNKRGEILEHCSSRLEKYILEFPKE 248

Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
           K     +Y++R   E+N+     +  YF IV +  Q+ +K+NI + PGRGS  GS+  + 
Sbjct: 249 K---QLEYQKRYKREINLFDLKGYWDYFSIVWELTQYIQKSNILISPGRGSSCGSLLIFL 305

Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
           + +  IDP ++ LL +RFLN     MPD DID    RR E+++++Q+ +G E     I  
Sbjct: 306 MGVNQIDPFKYGLLLDRFLNETSERMPDLDIDIEGSRRLEILKFLQSTFGEE---SFIIP 362

Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
             L+    +  +  ALQ  +S+ ++  +LI      P  +Q                   
Sbjct: 363 SILKRIKNINSIFAALQKVFSEEEKDSQLIGKLIDLPFLIQP------------------ 404

Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPL--SQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
                             H + I+    P+  + L   Y+D  S  PVT           
Sbjct: 405 ------------------HPSSII----PIFSTFLESTYKDDNSVFPVTPLEYSSTSYIH 442

Query: 568 LIKFDFLGLKTLTLLQ---KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
           L KFD L  + L  +    K + F +Q+  +++     F+D  T++LL    T  +F L+
Sbjct: 443 LQKFDLLSSQYLEFISEIIKDIGFSSQQLFEIN-----FEDKNTWNLLNRGLTYYLFHLD 497

Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
           SS ++  +   +   I D+  L+++ RPG   +I  + N K+ K+   +  PLI  +L E
Sbjct: 498 SSYIKSIIPMFELKSISDLAQLLAIIRPGINKHISKFLNYKSPKDS--NCPPLIRELLLE 555

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
           T+G+I++QEQ+M I   ++G SLS +D  R  + K   EE+   K  F S A +   +  
Sbjct: 556 TRGIILFQEQIMNIVSKVTGMSLSSSDKYRIILQKNKIEELSSLKREFFSLAREKKRNNF 615

Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
               I+  +  F  Y FNKSHA AYA +S+Q A++K +Y  +F  +++  E
Sbjct: 616 EINQIWNFINTFGKYSFNKSHAVAYAALSFQAAYLKANYCEKFFISAIKRE 666


>gi|325661459|ref|ZP_08150085.1| hypothetical protein HMPREF0490_00819 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472408|gb|EGC75620.1| hypothetical protein HMPREF0490_00819 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 1106

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 211/878 (24%), Positives = 375/878 (42%), Gaps = 123/878 (14%)

Query: 100 VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
           VL+    EG + +  L S+ ++ D G    +  +++ + I T   I++T    G I    
Sbjct: 122 VLIAKNYEGVKEINALSSKAFVRD-GHFYYQPRITFEELINTSDNILITTACIGGI---- 176

Query: 160 FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSL 218
             + +   ++  L F     DR Y+ +Q H    + + +Q + +++  + +PL+A  ++ 
Sbjct: 177 LASGTPDIQEDFLNFLIKNKDRCYLEIQHHCDDMQIKYNQYLAKISTQYGIPLIAGTDTH 236

Query: 219 FLSEE----------------DYE-AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            L++E                D E A D+        VV+ + +  +  D YLK      
Sbjct: 237 ALNDEHMRGRAIMQRSKDVQFDSESAWDMTFKSYDELVVAYEKQFAIAKDVYLK------ 290

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                   A+E T  IA R       ++   P+  +    +I+K        K   G++ 
Sbjct: 291 --------AIEETNRIADRVEEFKLDYSYKYPKLYDDSLTEIKK--------KIATGIKW 334

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
           R     I K  + ++Y+ R+ +EL          + L+  D+    +KN +  G  RGS 
Sbjct: 335 R----GIDKKKNYKEYQDRVVYELKTYIHNNALDFMLLEEDYKTELRKNGVKYGYSRGSV 390

Query: 382 AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
           +GS+ AY L IT++DP+RF+L FERF+N +R+S+ D D D+ ++ R +V +Y+ N+    
Sbjct: 391 SGSLIAYLLGITEVDPIRFNLNFERFMNEERVSLADIDSDWFKEDRWKVRQYLFNR-EKL 449

Query: 442 RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
               IITF +++ K A++DVGRAL M   +   L  L+  D      +     D ++R  
Sbjct: 450 HCCNIITFNTVKMKGAIKDVGRALGMTPQETQLLSNLVQEDENKHEFV-----DEKYR-- 502

Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
                    L E    + G       HAAG+V+   P+  +         + P++Q NMK
Sbjct: 503 ----LQYSELFEYVDIVVGTITSLGRHAAGLVVAPYPVDDVFGTLYISSDEKPISQINMK 558

Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            I+    +K D LGL  + L+ K+ + +    +  D   + F+D E +  +    TL IF
Sbjct: 559 EIDSLNFVKLDVLGLDCVGLIYKTCEAVGIPFLTPD--NLDFNDEEVWEDIAKDTTL-IF 615

Query: 622 QLESSGMRQALEG-MQPDCIEDI---------IALVSL-----------YRPGPIDNIVV 660
           Q ES      L   ++P  I+ I         I L+S+           YR      I  
Sbjct: 616 QFESDFAGSYLRDILRPQVIKKIKEKNPNLSYIDLMSMANGAIRPAGESYRTKLAAGIY- 674

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
              R NG +        ++  L  T G ++YQEQ+++      G+++ EAD++RR   KK
Sbjct: 675 ---RDNGNDA-------LNKFLAPTLGFLVYQEQIIEFLHRFCGFTMGEADIVRRHFSKK 724

Query: 721 IKEEMD---------------KQKERFISGASKN-----GISKTIAVNIFE----LLAKF 756
              E D               K+ E +I G  K      G+ +  A  I E    ++   
Sbjct: 725 TGTETDIPIIKDGGYMNNIDGKKSEHYIKGFIKTMKDDYGVDQVDAEQIIESFLQVIIDA 784

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
           ++Y F+K+HA  Y+ + +   +++ +YP+E L  ++ +   + EK  K          +I
Sbjct: 785 SNYLFSKNHADPYSFLGFACGYLRHYYPLETLTTALNIYASDDEKSLKIKDYIISKGYEI 844

Query: 817 MPPSVNTPCVDFKV--GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
            P        +++     N IY  +++IK      A  + E   +   +  E      + 
Sbjct: 845 FPIQFRKSKAEYQFDKNSNSIYQGISSIKYCNEKIADELFELGKNSYENFFELLFDINEK 904

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
             +N + L  L        FG ++  LL+ ++   K+A
Sbjct: 905 TSINSKQLMILTGLNFFKEFGENKY-LLKLIEYFDKFA 941


>gi|112961114|gb|ABI28176.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961117|gb|ABI28178.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961120|gb|ABI28180.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961123|gb|ABI28182.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961126|gb|ABI28184.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961129|gb|ABI28186.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961132|gb|ABI28188.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961135|gb|ABI28190.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961138|gb|ABI28192.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961141|gb|ABI28194.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961144|gb|ABI28196.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961147|gb|ABI28198.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961150|gb|ABI28200.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961153|gb|ABI28202.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961156|gb|ABI28204.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961159|gb|ABI28206.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961162|gb|ABI28208.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961165|gb|ABI28210.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961168|gb|ABI28212.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961171|gb|ABI28214.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961177|gb|ABI28218.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961183|gb|ABI28222.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961186|gb|ABI28224.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961189|gb|ABI28226.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961192|gb|ABI28228.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961195|gb|ABI28230.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961198|gb|ABI28232.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961201|gb|ABI28234.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961204|gb|ABI28236.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961207|gb|ABI28238.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961210|gb|ABI28240.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961213|gb|ABI28242.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961216|gb|ABI28244.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961219|gb|ABI28246.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961222|gb|ABI28248.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961225|gb|ABI28250.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961228|gb|ABI28252.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961231|gb|ABI28254.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961234|gb|ABI28256.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961237|gb|ABI28258.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961240|gb|ABI28260.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961243|gb|ABI28262.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961246|gb|ABI28264.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961249|gb|ABI28266.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961252|gb|ABI28268.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961255|gb|ABI28270.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961258|gb|ABI28272.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961261|gb|ABI28274.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961264|gb|ABI28276.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961267|gb|ABI28278.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961270|gb|ABI28280.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961273|gb|ABI28282.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961276|gb|ABI28284.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961279|gb|ABI28286.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961282|gb|ABI28288.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961285|gb|ABI28290.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961288|gb|ABI28292.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961291|gb|ABI28294.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961294|gb|ABI28296.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961297|gb|ABI28298.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
          Length = 454

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 198/347 (57%), Gaps = 11/347 (3%)

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S   A  ++
Sbjct: 1    YQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSRGYSDASANQVY 60

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            +++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +A+
Sbjct: 61   DMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITEAK 120

Query: 811  QFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
             + I ++ PS+N     F+V  ++ I YS   I+ V T     I+      PF    DFC
Sbjct: 121  NYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVPTKFILEIINERKKAPFRDFFDFC 180

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+FA 
Sbjct: 181  ERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLFA- 237

Query: 930  EKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
            E   F  K+          S+  + E E+   G Y S HP+  Y+  L+ + I      +
Sbjct: 238  EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAIT----RL 293

Query: 988  ATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            A +  G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 294  ANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 340


>gi|325989643|ref|YP_004249342.1| DNA polymerase III subunit alpha [Mycoplasma suis KI3806]
 gi|323574728|emb|CBZ40384.1| DNA polymerase III subunit alpha [Mycoplasma suis]
          Length = 827

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 155/591 (26%), Positives = 275/591 (46%), Gaps = 72/591 (12%)

Query: 212 VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR--PRVTPDHYLKNRSEMVSIFSDLPE 269
           ++   +LFL EEDY+   ++ ++ + +  S++      +   + L N SE  ++     +
Sbjct: 142 ISVRENLFLKEEDYDLFALVSSLKNKSSFSRELELNSHLKNSYLLNNYSENNNV-----Q 196

Query: 270 ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            ++N +++ + C+F        L  F        +K +  E+     + LE  + +    
Sbjct: 197 RIKNLIKLLKECNFYSLREKSQLSLF--------KKNKREEILEHCSSRLEKYILEFPKE 248

Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
           K     +Y++R   E+N+     +  YF IV +  Q+ +K+NI + PGRGS  GS+  + 
Sbjct: 249 K---QLEYQKRYKREINLFDLKGYWDYFSIVWELTQYIQKSNILISPGRGSSCGSLLIFL 305

Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
           + +  IDP ++ LL +RFLN     MPD DID    RR E+++++Q+ +G E        
Sbjct: 306 MGVNQIDPFKYGLLLDRFLNETSERMPDLDIDIEGSRRLEILKFLQSTFGEEGFI----- 360

Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
                                 +  + K I N  +   SLQ +  +   ++++L    +D
Sbjct: 361 ----------------------IPSILKRIKNINSIFASLQKVFSEEEEKDSQLMGKLID 398

Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPL--SQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
               I             H + I+    P+  + L   Y+D  S  PVT           
Sbjct: 399 LPFLIQ-----------PHPSSII----PIFSTFLESTYKDDNSVFPVTPLEYSSTSYIH 443

Query: 568 LIKFDFLGLKTLTLLQ---KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
           L KFD L  + L  +    K + F +Q+  +++     F+D  T++LL    T  +F L+
Sbjct: 444 LQKFDLLSSQYLEFISEIIKDIGFSSQQLFEIN-----FEDKNTWNLLNRGLTYYLFHLD 498

Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
           SS ++  +   +   I D+  L+++ RPG   +I  + N K+ K+   +  PLI  +L E
Sbjct: 499 SSYIKSIIPMFELKSISDLAQLLAIIRPGINKHISKFLNYKSPKDS--NCPPLIRELLLE 556

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
           T+G+I++QEQ+M I   ++G SLS +D  R  + K   EE+   K  F S A +   +  
Sbjct: 557 TRGIILFQEQIMNIVSKVTGMSLSSSDKYRIILQKNKIEELSSLKREFFSLAREKKRNNF 616

Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
               I+  +  F  Y FNKSHA AYA +S+Q A++K +Y  +F  +++  E
Sbjct: 617 EINQIWNFINTFGKYSFNKSHAVAYAALSFQAAYLKANYCEKFFISAIKRE 667


>gi|112961174|gb|ABI28216.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961180|gb|ABI28220.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
          Length = 454

 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 198/347 (57%), Gaps = 11/347 (3%)

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S   A  ++
Sbjct: 1    YQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSRGYSDASANQVY 60

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            +++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +A+
Sbjct: 61   DMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITEAK 120

Query: 811  QFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
             + I ++ PS+N     F+V  ++ I YS   I+ V T     I+      PF    DFC
Sbjct: 121  NYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVLTKFILEIINERKKAPFRDFFDFC 180

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+FA 
Sbjct: 181  ERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLFA- 237

Query: 930  EKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
            E   F  K+          S+  + E E+   G Y S HP+  Y+  L+ + I      +
Sbjct: 238  EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAIT----RL 293

Query: 988  ATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            A +  G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 294  ANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 340


>gi|156069315|gb|ABU44570.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069317|gb|ABU44571.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
          Length = 185

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 102/190 (53%), Positives = 132/190 (69%), Gaps = 8/190 (4%)

Query: 266 DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA- 324
           D+PEALEN+VEIA+RC+  +++    LP F  +       +E   L  K+  GLE RL  
Sbjct: 1   DIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMKETEFLVMKSREGLEERLEF 55

Query: 325 --QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                  +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGA
Sbjct: 56  LFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGA 115

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
           GS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + 
Sbjct: 116 GSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDA 175

Query: 443 VAQIITFGSL 452
           V+QIITFG++
Sbjct: 176 VSQIITFGTM 185


>gi|193221947|gb|ACF16338.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
          Length = 185

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 102/190 (53%), Positives = 132/190 (69%), Gaps = 8/190 (4%)

Query: 266 DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA- 324
           D+PEALEN+VEIA+RC+  +++    LP F  +       +E   L  K+  GLE RL  
Sbjct: 1   DIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMKETEFLVMKSREGLEERLEF 55

Query: 325 --QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                  +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGA
Sbjct: 56  LFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGA 115

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
           GS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + 
Sbjct: 116 GSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDA 175

Query: 443 VAQIITFGSL 452
           V+QIITFG++
Sbjct: 176 VSQIITFGTM 185


>gi|56807373|ref|ZP_00365358.1| COG0587: DNA polymerase III, alpha subunit [Streptococcus pyogenes
           M49 591]
          Length = 360

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/365 (34%), Positives = 199/365 (54%), Gaps = 24/365 (6%)

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           +S  + P V  D  L +  ++ + + +  P+AL+N  ++     +    +   LP F   
Sbjct: 17  LSLAETPVVESDQELTDCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF--- 72

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              +  K  + EL+    AGL+         KG   + Y+ RL  EL +I+ M F  YFL
Sbjct: 73  ---NRDKSAKQELQELTEAGLK--------EKGLWKEPYQSRLLHELVIISDMGFDDYFL 121

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           IV D +++ +     +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD 
Sbjct: 122 IVWDVLRFGRSKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDI 181

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           DID     R E +RYV+N+YG +  AQI+TF +  +K A+RDV +   +P  ++  L K 
Sbjct: 182 DIDLPDIYRSEFLRYVRNRYGSDHSAQIVTFSTFGSKQAIRDVFKRFGVPEYELTNLTKK 241

Query: 479 IP-NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
           I   D    V  ++I+    FR+   +     +   I++++EG  R  S HAAGIV+ D 
Sbjct: 242 IGFKDSLATVYEKSIS----FRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDD 297

Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKV 596
            L+  +P+      D+ +TQ++   +E  GL+K DFLGL+ LT + K  + +A+  G ++
Sbjct: 298 TLTNHIPLKSG--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVXKMQEKVAKDYGCQI 355

Query: 597 DLSLI 601
           D++ I
Sbjct: 356 DIAAI 360


>gi|255030789|ref|ZP_05302740.1| hypothetical protein LmonL_19816 [Listeria monocytogenes LO28]
          Length = 279

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 99/268 (36%), Positives = 168/268 (62%), Gaps = 3/268 (1%)

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
           RK+GKEKI   HP +  +L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  +
Sbjct: 2   RKHGKEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKAD 61

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +++++  F+ GA   G S+  A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+
Sbjct: 62  VLNEERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHF 121

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAI 842
           P  F+++ ++    N +KI ++  +A+ + I ++ PS+N     F++  +  I YS   I
Sbjct: 122 PAAFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVI 181

Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
           + V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L
Sbjct: 182 RKVPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATIL 241

Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            ++D + +Y   + ++  +K  N+FA +
Sbjct: 242 ATIDAVLQYISLLGED--SKGMNLFAED 267


>gi|324014113|gb|EGB83332.1| hypothetical protein HMPREF9533_01825 [Escherichia coli MS 60-1]
          Length = 164

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 95/162 (58%), Positives = 125/162 (77%), Gaps = 7/162 (4%)

Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQG 687
           +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E+I        H  + P+L+ T G
Sbjct: 3   LQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYG 62

Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
           +I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+
Sbjct: 63  IILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAM 122

Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+A
Sbjct: 123 KIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMA 164


>gi|167948888|ref|ZP_02535962.1| DNA polymerase III, alpha subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 158

 Score =  197 bits (502), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 89/123 (72%), Positives = 101/123 (82%)

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
           +I +M F GYFLIVADFIQWAK N IPVGPGRGSGAGS+ AY L ITD+DP+   LLFER
Sbjct: 1   MINQMGFPGYFLIVADFIQWAKDNAIPVGPGRGSGAGSLVAYVLKITDLDPIEHELLFER 60

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           FLNP+R+SMPDFDIDFC DRRDEVI YV  KYG + V+QIIT+GS+ AKA +RDVGR L 
Sbjct: 61  FLNPERVSMPDFDIDFCMDRRDEVIDYVARKYGRDSVSQIITYGSMAAKAVVRDVGRVLG 120

Query: 467 MPY 469
            PY
Sbjct: 121 HPY 123


>gi|156339567|ref|XP_001620200.1| hypothetical protein NEMVEDRAFT_v1g223345 [Nematostella vectensis]
 gi|156204776|gb|EDO28100.1| predicted protein [Nematostella vectensis]
          Length = 308

 Score =  197 bits (502), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 113/300 (37%), Positives = 174/300 (58%), Gaps = 18/300 (6%)

Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDSRFREARLADPSVDR 510
           +  K+A+RD  R L +P  + DR+ KLIP   P+     + I++     +  L     D+
Sbjct: 1   MATKSAIRDTARVLDLPLFEADRIAKLIPGMMPSKWNLARFISEKEDDVKKALRSDEFDK 60

Query: 511 LLEI----------------SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
           + E+                ++ LEG  R+   HA G++I    ++  VP+     SDL 
Sbjct: 61  VKELIAIANEGDLAGETIQQAKILEGSMRNTGIHACGVIITPSDITNFVPVTTAKDSDLY 120

Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLT 613
           VTQF+    E AGL+K DFLGLKTLTL++ ++  +  R G+++D    P DD +TY L  
Sbjct: 121 VTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRLGIELDPDTFPIDDVKTYELFQ 180

Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              T+GIFQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RKNG+E+I  
Sbjct: 181 RGETVGIFQYESPGMQKYMKDLKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEEIKY 240

Query: 674 IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  L ET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK K+ +DK K +F+
Sbjct: 241 DLEACEEYLGETYGITVYQEQVMLLSQSLADFTKGEADVLRKAMGKKQKDVLDKMKPKFV 300


>gi|260220163|emb|CBA27426.1| Error-prone DNA polymerase [Curvibacter putative symbiont of Hydra
            magnipapillata]
          Length = 1035

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 143/518 (27%), Positives = 234/518 (45%), Gaps = 39/518 (7%)

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            + +L+   RH S H  G V+   PL++LVP+      D  V Q++   ++  GL+K D L
Sbjct: 460  ATQLQSFPRHLSQHVGGFVLTQGPLTRLVPVENASMPDRSVIQWDKDDLDAVGLLKVDVL 519

Query: 575  GLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
             L  L+ +++ L  + Q R V + +  +P +D  TY ++    T+G+FQ+ES      L 
Sbjct: 520  ALGMLSAIRRCLHLIGQWRDVPLRMQDVPAEDPATYAMICQADTVGVFQIESRAQMSMLP 579

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
             ++P C  D++  V++ RPGPI   +V  Y   +   + +    P ++  LK T GV I+
Sbjct: 580  RLKPKCFYDLVVEVAIVRPGPIQGGMVHPYLKARANPQAVTYASPGLEEALKRTLGVPIF 639

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            QEQVMQIA   + ++  EAD LRR+M   K K  + K  +R + G  KNG ++  A  +F
Sbjct: 640  QEQVMQIAMAAADFTAGEADQLRRSMAAWKRKGGVGKFYDRLVGGMLKNGYTQEFADTLF 699

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            + +  F +YGF +SHAA++A++ Y + W+K H P  FLAA +  +        +  QDAR
Sbjct: 700  KQIEGFGEYGFPESHAASFALLVYVSCWLKRHEPACFLAAMLNSQPLGFYGPAQLVQDAR 759

Query: 811  QFNIQIMPPSV---------NTPCVDFKVGDNRIYYSLAAIK-------GVGTTTARHIM 854
               +++    V           P       +     + AAI+       G+    A  I 
Sbjct: 760  HHGVEVRAMDVLHSAWDCTLEQPQAQHPTPNGWTLQTQAAIRLGLRMVSGLQQAVAERIC 819

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
               A+ PF S +D   R     L+   L++L  A AL      R Q +     ++     
Sbjct: 820  AERANGPFTSTQDLALRC---ALDAGDLKALASADALISLSGHRRQQVWDASALRPAPAL 876

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
            ++     +             D++ L     E   V F+      G     HPL + +  
Sbjct: 877  LQGVPIEE-------------DELALPPAD-EGEEVTFDYA--ATGLTLRSHPLQLLREQ 920

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            L K  +    +      G  +R   +V ++QQ  T KG
Sbjct: 921  LSKKNLLTAAQMRDYPSGRLVRACGIVTARQQPGTAKG 958



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 143/287 (49%), Gaps = 26/287 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEM 260
           Q+A    L  +AT      +      HDVL AV     V+Q     +   +H+L++R+ +
Sbjct: 76  QIAAVSGLAPLATGQVRMHTRSRKPLHDVLTAVRCGLPVAQCGFALQANAEHHLRSRARL 135

Query: 261 VSIFSDLPEALENTVEIARRCSFILQV------HAPILPRFIEKECDDIQKEEENELRNK 314
            ++F+  P+ L +T+ +A RCSF L           +LP     +           LR  
Sbjct: 136 AALFT--PDELAHTLVVAGRCSFTLDALRYQYPMEAVLPGHTPAQ----------TLRQY 183

Query: 315 AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
              G   R   G           R +++ EL +IA MK+  YFL V D +++A+   I +
Sbjct: 184 TEEGALERYPTGM------PPHVRTQVEHELALIADMKYEMYFLTVHDLVRFARGRGI-L 236

Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
             GRGS A S   Y L +T++DP R ++LFERF++ +R   PD D+DF   RR+EVI+Y+
Sbjct: 237 CQGRGSAANSAVCYCLGVTEVDPSRMNVLFERFISKERDEPPDIDVDFEHQRREEVIQYI 296

Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
             KYG ER A      S + ++ALRDVG AL++P   +  + K  P 
Sbjct: 297 YAKYGRERAAITAVVASYRPRSALRDVGWALEIPEVLITAMAKEHPG 343


>gi|32481342|gb|AAP84018.1| catalase [Vibrio cholerae]
          Length = 188

 Score =  197 bits (501), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 99/192 (51%), Positives = 133/192 (69%), Gaps = 8/192 (4%)

Query: 264 FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
           F+++P+AL N+V+IA+RC+  +++    LP F            E+ L  K+  GLE RL
Sbjct: 1   FANIPKALANSVQIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERL 55

Query: 324 A---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                    +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGS
Sbjct: 56  EFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGS 115

Query: 381 GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
           GAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG 
Sbjct: 116 GAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGR 175

Query: 441 ERVAQIITFGSL 452
           + V+QIITFG++
Sbjct: 176 DAVSQIITFGTM 187


>gi|255652455|ref|ZP_05399357.1| DNA polymerase III alpha subunit [Clostridium difficile QCD-37x79]
          Length = 1110

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 190/838 (22%), Positives = 368/838 (43%), Gaps = 86/838 (10%)

Query: 161 FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSL 218
           +N +    + LL +      R ++ +Q H   D  +E    + + +  + +PL+A  ++ 
Sbjct: 176 YNYNIKKRQELLEWMSKNNHRCFLEIQYHNC-DSQKEYNKMLYEWSILYGIPLIAGTDTH 234

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD---LP-----EA 270
             SE   E   VL   + ++   ++D   +T     KN  ++V  F     LP     EA
Sbjct: 235 SSSEYKAECRKVLQK-SKNSFYGEEDEFDLT----WKNYDDLVDEFKKQNILPIDIILEA 289

Query: 271 LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
           + NT ++A              P        D+  E  N+     +    ++L      +
Sbjct: 290 INNTNKLAAMVEDFTLDKTFKYP--------DLYGENANQTWKDYIDEKLLKLINVNAIE 341

Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                 Y+ R+  E  ++     + + L VA+ + W K N+I V P RGS  GS+ AY  
Sbjct: 342 KEKIDIYKLRVQEEYEIMCNQGMASFMLFVAELVNWCKDNDIHVSPCRGSVGGSLIAYIT 401

Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
            ITD+D +R+   F RF N DR+S+ D D+DF    R +V  Y+ N++G ++V+ I+TF 
Sbjct: 402 GITDVDAIRWKTAFSRFCNADRISLGDIDLDFSPSDRQKVYEYIINRFGKDKVSYILTFQ 461

Query: 451 SLQAKAALRDVGRALQM------------------PYSQVDRLCKLI----------PND 482
           +++ + ++  + + L                     YS++      I          P+ 
Sbjct: 462 TIKDRGSIDVLAKGLNYDNLNLVKNIKDTFDNIFKEYSKIIIEEINIEELEGKESKSPDF 521

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL-------EGLYRHASTHAAGIVIG 535
             H + L  I ++ + +         D L E ++ L        G+     TH AG++  
Sbjct: 522 IDHELYLHTIRNNKKKQRLIKLKEMWDELREHNKDLFYYFDGIRGVITSKGTHPAGMI-- 579

Query: 536 DRPLS---QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
             P++    L   Y+D   + PV+   MK ++    +KFD LGLKT+ ++Q +   + + 
Sbjct: 580 GSPITLYDNLGVFYKDGNENSPVSFCTMKAVDSLNYVKFDILGLKTIGIIQDTYRLINKE 639

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                   I ++D   +  +  +  +GIFQ E       L   +  C+ D+  + +  RP
Sbjct: 640 WKYA--HEINWNDKNVWEDIN-RINVGIFQFEGDYAFDLLSTYKAKCVNDMSLVNASLRP 696

Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                   Y  R   +E   +    ID +LK+  G +++QE  ++    +  +  S AD 
Sbjct: 697 SG----KSYRERLINREFNKNPSEEIDELLKDNNGFLVFQEDTIKFLTDICDFDGSLADT 752

Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNG-----ISKTIAVNIFELLAKFADYGFNKSHAA 767
            RRA+GKK   E++KQ  + ++G  K+      I++  A    ++++  ++Y F  +H+ 
Sbjct: 753 TRRAIGKKDDVELEKQLPKILNGYCKHSNKPKEIAEKEAKEFIQIISDSSEYQFGYNHST 812

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            Y++  Y    ++ +YP+EF  + +    DN E +    + A+++ I++          +
Sbjct: 813 GYSMNGYICGMLRYYYPLEFTTSYLNW-ADNEEDLNNGIKLAKEYGIEVKNCKFRYSRAE 871

Query: 828 FKVGD--NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           + +    N IY  +++IK + T  A ++  +  +  +++       ++ K +N R LE L
Sbjct: 872 YFMDKKTNTIYKGISSIKYLNTEVAEYLY-SLRNNEYNTFTKLLIDLN-KNINSRQLEIL 929

Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
           +     + FG    +  + L+ +Q ++ + EK +  K  NI+A     F+++ T + F
Sbjct: 930 IKLNFFEEFG----KTSKLLNIVQVFSAFYEKKQL-KKTNIYAKYIEKFANRKTEKMF 982


>gi|32481344|gb|AAP84019.1| catalase [Vibrio cholerae]
          Length = 183

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 100/188 (53%), Positives = 129/188 (68%), Gaps = 8/188 (4%)

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA-- 324
           +PEAL N+VEIA+RC+  +++    LP F            E+ L  K+  GLE RL   
Sbjct: 1   IPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFL 55

Query: 325 -QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                 +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAG
Sbjct: 56  FPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAG 115

Query: 384 SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
           S+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + V
Sbjct: 116 SLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAV 175

Query: 444 AQIITFGS 451
           +QIITFG+
Sbjct: 176 SQIITFGT 183


>gi|258539579|ref|YP_003174078.1| DNA polymerase III subunit alpha [Lactobacillus rhamnosus Lc 705]
 gi|257151255|emb|CAR90227.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus Lc 705]
          Length = 433

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/352 (31%), Positives = 181/352 (51%), Gaps = 28/352 (7%)

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    +  ++++FI GA K G  +  A  
Sbjct: 1    MVYQEQVMQVANVMGGFSLGEADLLRRAMSKKKSSVLAAEQDKFIEGALKQGFPEATAKT 60

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++  + +FA+YGFN+SHA AY+ +++  A++K HYP  F AA M   M+N+ K++ + Q+
Sbjct: 61   VYAYIDRFANYGFNRSHAVAYSKVAFWLAYLKVHYPAAFFAALMNASMNNLPKLRTYVQE 120

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
            A+   + ++ P +N     FK+   +I + L +IKG+       I  A  + PF  L D 
Sbjct: 121  AKARKVGLLGPDINQSNGGFKLSQGKIRFGLLSIKGMRRDFVEAIFAARKNGPFKDLRDL 180

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              R+D K L     ++   AGA D F  +R Q L +LD +    +            +  
Sbjct: 181  LQRLDPKWLKTDYYKAPTLAGAFDQFSNNRAQTLANLDELINSVK------------LAG 228

Query: 929  HEKGTFSDKITLEKFSVE----NSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIK 981
            ++ G FS    L   ++E     +S R E E  VLG Y SGHP+D Y P+    R + + 
Sbjct: 229  NDVGLFS---MLAPKTIEVPEMPASERLEAEAEVLGVYLSGHPVDKYAPLKTQYRLINVS 285

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              EE      G  + +  +V   ++ +T+ G  + ++   +         FP
Sbjct: 286  DLEE------GRAVDILLLVRHIKRIRTKTGKPMAFIDGQDATGNVSLTIFP 331


>gi|254716293|ref|ZP_05178104.1| error-prone DNA polymerase [Brucella ceti M13/05/1]
 gi|261218072|ref|ZP_05932353.1| error-prone DNA polymerase [Brucella ceti M13/05/1]
 gi|260923161|gb|EEX89729.1| error-prone DNA polymerase [Brucella ceti M13/05/1]
          Length = 605

 Score =  194 bits (493), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 142/465 (30%), Positives = 227/465 (48%), Gaps = 39/465 (8%)

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
           H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R   
Sbjct: 162 HQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLE 221

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ------VHAPILP-RFIEKEC 300
              + +LK   EMV +F D PEA+  T +     +F L          PI P +  ++  
Sbjct: 222 KNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPGKTAQQHL 281

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D+  E     R+     +  ++ QG I K             EL +IAR+++  YFL V
Sbjct: 282 YDLVWE--GAARHYGADMIPPKV-QGLINK-------------ELALIARLEYEPYFLTV 325

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            D +  A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+
Sbjct: 326 YDIVTHAREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDV 384

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DF  +RR+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   + 
Sbjct: 385 DFEHERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVW 444

Query: 481 NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                 +  Q I      R+A L   +P + R +E++  L G  RH S H  G V+    
Sbjct: 445 GLSGGGIDRQHI------RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDR 498

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------ 592
           L + VP+           +++   I++ GL+K D L L  LT ++K+ D + Q       
Sbjct: 499 LDETVPIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYG 558

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
           G K+ L+ +P +D   Y +L    +LG+FQ+ES      L  ++P
Sbjct: 559 GEKLTLASLPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRP 603


>gi|215447691|ref|ZP_03434443.1| error-prone DNA polymerase [Mycobacterium tuberculosis T85]
          Length = 494

 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 112/330 (33%), Positives = 181/330 (54%), Gaps = 11/330 (3%)

Query: 579 LTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
           L+ L  + D +A+ +G++VDL+ +   +   Y +L    ++G+FQ+ES      L  ++P
Sbjct: 1   LSALHYAKDLVAEHKGIEVDLARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKP 60

Query: 638 DCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
               D++  V+L RPGPI    V  Y  R+NG + ++  HP + P L++T GV ++QEQ+
Sbjct: 61  RVFYDLVVEVALIRPGPIQGGSVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQL 120

Query: 696 MQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELL 753
           MQ+A   +G+S +EAD LRRAMG K+  E M + + RF  G  + +G    +   I+E L
Sbjct: 121 MQLAVDCAGFSAAEADQLRRAMGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKL 180

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             FA++GF +SHA ++A + + +AW K H+P  F AA +  +       +    DAR+  
Sbjct: 181 EAFANFGFPESHALSFASLVFYSAWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHG 240

Query: 814 IQIMPPSVNTPCVDFKV--GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCS 870
           + +  P VN              +   L A++ +G   A  ++ E +A+ PF SL D  S
Sbjct: 241 VAVHGPCVNASLAHATCENAGTEVRLGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTS 300

Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
           RV   +L+   +E+L  AGAL CFG SR +
Sbjct: 301 RV---QLSVPQVEALATAGALGCFGMSRRE 327


>gi|121592122|ref|ZP_01679085.1| DNA polymerase III alpha subunit [Vibrio cholerae 2740-80]
 gi|121546174|gb|EAX56515.1| DNA polymerase III alpha subunit [Vibrio cholerae 2740-80]
          Length = 182

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 96/186 (51%), Positives = 127/186 (68%), Gaps = 8/186 (4%)

Query: 256 NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
           + +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F            E+ L  K+
Sbjct: 1   SEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKS 55

Query: 316 VAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+I
Sbjct: 56  REGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDI 115

Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
           PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI 
Sbjct: 116 PVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVID 175

Query: 433 YVQNKY 438
           +V N +
Sbjct: 176 HVANVW 181


>gi|165928515|ref|ZP_02224347.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165919449|gb|EDR36805.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. F1991016]
          Length = 569

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 167/602 (27%), Positives = 278/602 (46%), Gaps = 80/602 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           L V + +SL E AL   N + KIA D    A+   D+ N+ S +   Q+A    +  I G
Sbjct: 4   LMVRTDFSLGESALKAENAV-KIARDAGYTAVISADSMNIASVIPL-QRAAGDDMAVICG 61

Query: 73  CQLDI----DMQDNLKMTNQGKTPFPTVP-----SIVLLVSTAEGYQRLIELVSRMYLLD 123
            +L++      +   ++  + +    ++          L+   +GY+ + EL++     +
Sbjct: 62  VKLNVVDDPTYEHRARLAKESERCMESLVRDRSYCFTALIKNEQGYRDVCELMTLANKRE 121

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG---- 179
           Q     R+ L  L     +G I+L     G            V ++R   F K+ G    
Sbjct: 122 QFYFVPRLALDQLAAAYAKGNIILLTSDIG-----------SVFQRR--DFAKIIGTLVT 168

Query: 180 ----DRLYVNLQRHRG--YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
               D  Y  +  H    YD+    + +++A   ++  VA   + + + +D +  D+   
Sbjct: 169 AGGRDNFYSVVYPHPTPFYDQI-NVRAMKVASALKIEPVAFYPAYYEAVDDADIKDIAHM 227

Query: 234 VAHSTVVSQKDRPRVTP--DHYLKNRSEMV------SIFSDLP--EALENTVE--IARRC 281
           V ++  + Q  R R+    D+ +  R  ++      S+  D+P   A+ +T +  I   C
Sbjct: 228 VTNNIKIDQPHRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEAC 287

Query: 282 SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR--- 338
           ++      P LP+  +        +E   L   AVAGL  RL          A ++R   
Sbjct: 288 TWRWHELPPALPKMAD--------DEPATLMKLAVAGLRKRLTTKEFGYTPPASEHRVYV 339

Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            RL +E++ + R+ F GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+
Sbjct: 340 DRLKYEMDTLTRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPI 399

Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
           R  LLFERF+NP+R+ +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +AL
Sbjct: 400 RHGLLFERFINPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASAL 459

Query: 459 RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS-RFREARLADPSVDRL------ 511
           RD  R   +  +           D A     + + DDS    E R    S+D+       
Sbjct: 460 RDTARIYGVDAA-----------DMAVSKEFKNLEDDSLSLEELREQLASLDKYATKYPE 508

Query: 512 -LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
             + + KL+ L R    HAAG+++   PL +  P+  ++R +     F+ ++ E  GLIK
Sbjct: 509 AFKAACKLQSLMRGFGRHAAGMIVAGVPLVERTPV--ELRGNARCIAFDKRYCEAMGLIK 566

Query: 571 FD 572
            D
Sbjct: 567 LD 568


>gi|289759527|ref|ZP_06518905.1| DNA polymerase subunit III (alpha) dnaE2 [Mycobacterium
           tuberculosis T85]
 gi|289715091|gb|EFD79103.1| DNA polymerase subunit III (alpha) dnaE2 [Mycobacterium
           tuberculosis T85]
          Length = 491

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/322 (34%), Positives = 177/322 (54%), Gaps = 11/322 (3%)

Query: 587 DFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
           D +A+ +G++VDL+ +   +   Y +L    ++G+FQ+ES      L  ++P    D++ 
Sbjct: 6   DLVAEHKGIEVDLARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVV 65

Query: 646 LVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            V+L RPGPI    V  Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +
Sbjct: 66  EVALIRPGPIQGGSVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCA 125

Query: 704 GYSLSEADVLRRAMG-KKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGF 761
           G+S +EAD LRRAMG K+  E M + + RF  G  + +G    +   I+E L  FA++GF
Sbjct: 126 GFSAAEADQLRRAMGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGF 185

Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            +SHA ++A + + +AW K H+P  F AA +  +       +    DAR+  + +  P V
Sbjct: 186 PESHALSFASLVFYSAWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCV 245

Query: 822 NTPCVDFKV--GDNRIYYSLAAIKGVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLN 878
           N              +   L A++ +G   A + + E +A+ PF SL D  SRV   +L+
Sbjct: 246 NASLAHATCENAGTEVRLGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLS 302

Query: 879 RRVLESLVFAGALDCFGYSRMQ 900
              +E+L  AGAL CFG SR +
Sbjct: 303 VPQVEALATAGALGCFGMSRRE 324


>gi|41817835|gb|AAS11675.1| polymerase III subunit alpha [Shigella flexneri]
          Length = 300

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 107/301 (35%), Positives = 167/301 (55%), Gaps = 13/301 (4%)

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
           P+R+SMPDFD+DFC ++ D+VI +V                                   
Sbjct: 1   PERVSMPDFDVDFCMEKLDQVIEHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
                        P   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA
Sbjct: 61  XXXXXXXXXXXXXPGMTLA-KAFEAELQLPEIYEADEEVKALIDMARKLEGVTRNAGKHA 119

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +
Sbjct: 120 GGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI 179

Query: 590 AQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            +R  K     +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+I
Sbjct: 180 NKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMI 239

Query: 645 ALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQ 697
           ALV+L+RPGP+ + +V N  +RK+G+E+I        H  +  +L+ T G+I+YQEQVMQ
Sbjct: 240 ALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKSVLEPTYGIILYQEQVMQ 299

Query: 698 I 698
           I
Sbjct: 300 I 300


>gi|265763453|ref|ZP_06092021.1| DNA polymerase III subunit alpha [Bacteroides sp. 2_1_16]
 gi|263256061|gb|EEZ27407.1| DNA polymerase III subunit alpha [Bacteroides sp. 2_1_16]
          Length = 731

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 151/491 (30%), Positives = 252/491 (51%), Gaps = 41/491 (8%)

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHE---RVAQIITFGSLQAKAALRDVGRALQMPYS 470
           S+PD D+DF  DRR EV  Y++ +Y H+   RV    TF +L+ KA L+DV R  ++P +
Sbjct: 33  SLPDVDVDFQSDRRQEVKEYIERRYNHDGKQRVFSAGTFTTLKLKAVLKDVARVHRVPVN 92

Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD-PSVDRLLEISQKLEGLYRHASTHA 529
            V+ +  +  +D      L  +A  ++   + + + P V   +E  + L G  R +S HA
Sbjct: 93  IVNYITAIFEDDNMSWTDLFTMAATNKKVHSFIMEYPQV---IEDIRTLMGQPRSSSVHA 149

Query: 530 AGIVIG-------DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
           + +++        D       P+ +     + +++F+   +++ GL+K D LG+K L+ L
Sbjct: 150 SALLVTPDSKDGKDLECFDFTPIKK--IDGVLISEFDGYSLDEQGLLKNDCLGIKELSKL 207

Query: 583 QKSLDFLAQRGVKVDLSL-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
           Q  ++    +    D++         DD + Y LL    T  IFQ  S GM + L  MQP
Sbjct: 208 QAVINICNDK-YHTDITFQNIVQSGLDDPKVYQLLQKGYTQNIFQFSSKGMTKFLVSMQP 266

Query: 638 DCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
           D IED+IA  +L+RP  +D+     Y + K G    V +    + M K T GV+ YQEQ+
Sbjct: 267 DKIEDLIAANALFRPATLDSGSTDKYVDCKLGDADPVYLWGTYNAM-KNTYGVLCYQEQL 325

Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            QIA+ +  +SL E   L + + KK  +++   +++F++GA++NG  K  A  I+ +   
Sbjct: 326 AQIAREVGKFSLGEGVKLVKLISKKKVDKILALRDKFMAGANENGCPKEDAEAIWHMFEV 385

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN----VEKIKKFCQDARQ 811
              Y FNKSHA AYAV +Y  A++K +YP  F   ++    D+    +    + C +A+ 
Sbjct: 386 AGGYLFNKSHATAYAVTAYAGAYLKANYPTAFYTIALQWAKDDEIPTLMSEMELCSEAK- 444

Query: 812 FNIQIMPPSVN----TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLE 866
               I+PP +N    T   D++   N+I++SL+ IK +G      I+ E +    F S+E
Sbjct: 445 ----IVPPDINVSGGTFITDYET--NKIFWSLSRIKMLGAKATEWIINERNVRGEFSSIE 498

Query: 867 DFCSRVDSKKL 877
           +F  R+   KL
Sbjct: 499 NFIERIFRYKL 509


>gi|156902002|gb|ABU96794.1| DNA polymerase III alpha subunit [Vibrio cholerae]
 gi|295848033|gb|ADG44928.1| DNA polymerase III alpha subunit [Vibrio cholerae]
 gi|295848037|gb|ADG44930.1| DNA polymerase III alpha subunit [Vibrio cholerae]
          Length = 179

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 96/184 (52%), Positives = 125/184 (67%), Gaps = 8/184 (4%)

Query: 263 IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
           +F+D+PEAL N+VEIA+RC+  +++    LP F            E+ L  K+  GLE R
Sbjct: 1   LFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEER 55

Query: 323 LA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
           L         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRG
Sbjct: 56  LEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRG 115

Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
           SGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG
Sbjct: 116 SGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYG 175

Query: 440 HERV 443
            + V
Sbjct: 176 RDAV 179


>gi|112959018|gb|ABI26998.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959045|gb|ABI27016.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959108|gb|ABI27058.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
          Length = 441

 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 187/334 (55%), Gaps = 11/334 (3%)

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S   A  +++++ +FA+YGFN+
Sbjct: 1    GFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNR 60

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +A+ + I ++ PS+N 
Sbjct: 61   SHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINH 120

Query: 824  PCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                F+V  ++ I YS   I+ V T     I+      PF    DFC R+  K L+  VL
Sbjct: 121  SNYYFQVENESSIRYSFRVIRKVPTKFILEIINERKKAPFQDFFDFCERMPHKMLSETVL 180

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+FA E   F  K+    
Sbjct: 181  EALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRY 237

Query: 943  FSVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAA 999
                  S+  + E E+   G Y S HP+  Y+  L+ + I      +A +  G N ++AA
Sbjct: 238  RKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAA 293

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 294  YVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 327


>gi|295848035|gb|ADG44929.1| DNA polymerase III alpha subunit [Vibrio cholerae]
          Length = 178

 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 96/183 (52%), Positives = 124/183 (67%), Gaps = 8/183 (4%)

Query: 264 FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
           F+D+PEAL N+VEIA+RC+  +++    LP F            E+ L  K+  GLE RL
Sbjct: 1   FADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERL 55

Query: 324 A---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                    +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGS
Sbjct: 56  EFLFPDPDVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGS 115

Query: 381 GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
           GAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG 
Sbjct: 116 GAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGR 175

Query: 441 ERV 443
           + V
Sbjct: 176 DAV 178


>gi|299145851|ref|ZP_07038919.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23]
 gi|298516342|gb|EFI40223.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23]
          Length = 731

 Score =  187 bits (475), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 151/492 (30%), Positives = 252/492 (51%), Gaps = 39/492 (7%)

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGH---ERVAQIITFGSLQAKAALRDVGRALQMPYS 470
           S+PD D+DF  DRR EV  Y++ +Y H   +RV    TF +L+ KA L+DV R  ++P +
Sbjct: 33  SLPDVDVDFQSDRRQEVKEYIERRYNHDGKQRVFSAGTFTTLKLKAVLKDVARVHRVPVN 92

Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD-PSVDRLLEISQKLEGLYRHASTHA 529
            V+ +  +  +D      L  +A  ++   + + + P V   +E  + L G  R +S HA
Sbjct: 93  IVNYITAIFEDDNMSWTDLFTMAATNKKVHSFIMEYPQV---IEDIRTLMGQPRSSSVHA 149

Query: 530 AGIVIG-------DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
           + +++        D       P+ +     + +++F+   +++ GL+K D LG+K L+ L
Sbjct: 150 SALLVTPDSKDGKDLECFDFTPIKK--IDGVLISEFDGYSLDEQGLLKNDCLGIKELSKL 207

Query: 583 QKSLDFLAQR-GVKVDLSLI---PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
           Q  ++    +    +    I     DD + Y LL    T  IFQ  S GM + L  MQPD
Sbjct: 208 QAVINICNDKYHTNITFQNIVQSGLDDPKVYQLLQKGYTQNIFQFSSKGMTKFLVSMQPD 267

Query: 639 CIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            IED+IA  +L+RP  +D+     Y + K G    V +    + M K T GV+ YQEQ+ 
Sbjct: 268 KIEDLIAANALFRPATLDSGSTDKYVDCKLGDADPVYLWGTYNAM-KNTYGVLCYQEQLA 326

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           QIA+ +  +SL E   L + + KK  +++   +++F++GA++NG  K  A  I+ +    
Sbjct: 327 QIAREVGKFSLGEGVKLVKLISKKKVDKILALRDKFMTGANENGCPKEDAEAIWHMFEVA 386

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN----VEKIKKFCQDARQF 812
             Y FNKSHA AYAV +Y  A++K +YP  F   ++    D+    +    + C +A+  
Sbjct: 387 GGYLFNKSHATAYAVTAYAGAYLKANYPTAFYTIALQWAKDDEIPTLMSEMELCSEAK-- 444

Query: 813 NIQIMPPSVN----TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLED 867
              I+PP +N    T   D++   N+I++SL+ IK +G      I+ E +    F S+E+
Sbjct: 445 ---IVPPDINVSGGTFITDYET--NKIFWSLSRIKMLGAKATEWIINERNVRGEFSSIEN 499

Query: 868 FCSRVDSKKLNR 879
           F  R+   KL +
Sbjct: 500 FIERIFRYKLKQ 511


>gi|112959021|gb|ABI27000.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959024|gb|ABI27002.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959027|gb|ABI27004.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959030|gb|ABI27006.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959033|gb|ABI27008.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959036|gb|ABI27010.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959039|gb|ABI27012.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959042|gb|ABI27014.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959048|gb|ABI27018.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959051|gb|ABI27020.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959054|gb|ABI27022.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959057|gb|ABI27024.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959060|gb|ABI27026.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959063|gb|ABI27028.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959066|gb|ABI27030.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959069|gb|ABI27032.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959072|gb|ABI27034.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959075|gb|ABI27036.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959078|gb|ABI27038.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959081|gb|ABI27040.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959084|gb|ABI27042.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959087|gb|ABI27044.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959090|gb|ABI27046.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959093|gb|ABI27048.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959096|gb|ABI27050.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959099|gb|ABI27052.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959102|gb|ABI27054.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959105|gb|ABI27056.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959111|gb|ABI27060.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959114|gb|ABI27062.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959117|gb|ABI27064.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959120|gb|ABI27066.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959123|gb|ABI27068.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959126|gb|ABI27070.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959129|gb|ABI27072.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959132|gb|ABI27074.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959135|gb|ABI27076.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959138|gb|ABI27078.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959141|gb|ABI27080.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959144|gb|ABI27082.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959147|gb|ABI27084.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959150|gb|ABI27086.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959153|gb|ABI27088.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959156|gb|ABI27090.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959159|gb|ABI27092.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959162|gb|ABI27094.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959165|gb|ABI27096.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959168|gb|ABI27098.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959171|gb|ABI27100.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959174|gb|ABI27102.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959177|gb|ABI27104.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959180|gb|ABI27106.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959183|gb|ABI27108.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959186|gb|ABI27110.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959189|gb|ABI27112.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959192|gb|ABI27114.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959195|gb|ABI27116.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959198|gb|ABI27118.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959201|gb|ABI27120.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
          Length = 441

 Score =  187 bits (475), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 187/334 (55%), Gaps = 11/334 (3%)

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S   A  +++++ +FA+YGFN+
Sbjct: 1    GFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNR 60

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +A+ + I ++ PS+N 
Sbjct: 61   SHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINH 120

Query: 824  PCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                F+V  ++ I YS   I+ V T     I+      PF    DFC R+  K L+  VL
Sbjct: 121  SNYYFQVENESSIRYSFRVIRKVPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVL 180

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+FA E   F  K+    
Sbjct: 181  EALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRY 237

Query: 943  FSVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAA 999
                  S+  + E E+   G Y S HP+  Y+  L+ + I      +A +  G N ++AA
Sbjct: 238  RKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAA 293

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 294  YVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 327


>gi|163783832|ref|ZP_02178813.1| DNA polymerase III alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880903|gb|EDP74426.1| DNA polymerase III alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 432

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/349 (32%), Positives = 191/349 (54%), Gaps = 19/349 (5%)

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M +A +LSG++++EAD LR+A+GKK  + M K K+RFI+GA + G SK     +++ + K
Sbjct: 1    MFMANILSGFTMAEADTLRKAIGKKKADVMAKMKDRFINGAVEKGFSKEKISQLWDDIEK 60

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSH+ AYA ++Y TA++KT+YP EF A  +T E  N +K      D + F I+
Sbjct: 61   FASYSFNKSHSTAYAYLTYWTAYIKTYYPEEFFAVKLTTE-KNDDKFLNILNDMKDFGIE 119

Query: 816  IMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
            ++PP +N    +F + +  +I + LA IK VG ++A+ I+E    +  +  + D   R+D
Sbjct: 120  LLPPHINKSLSEFAIEEKGKIRFGLARIKNVGESSAKAIVEERIKNGEYHDIFDIAERLD 179

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            SK +N+RVLE+L+ AGA D     R  +L ++D      Q   +++ +   ++       
Sbjct: 180  SKNMNKRVLEALIKAGAFDFTEVDRGVMLHNIDKALTSGQKQRQSKLSGQNSLLGLMMKP 239

Query: 934  FSDKITLEKFS-----VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
               K  +  ++      E   + +E E  VLGFY SGHPL  Y+  L     KG    +A
Sbjct: 240  EETKTAVLSYNDAPHLTEREKLDYEKE--VLGFYISGHPLKAYQKEL-----KGRVLPIA 292

Query: 989  TI----RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++      + +++A ++ + ++KKTR G+ +      +     +   FP
Sbjct: 293  SLITRKSRDRVKVAGVISNVKKKKTRSGNTMAVFQLQDETGIMDVRAFP 341


>gi|156902006|gb|ABU96796.1| DNA polymerase III alpha subunit [Vibrio cholerae]
          Length = 177

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 95/181 (52%), Positives = 123/181 (67%), Gaps = 8/181 (4%)

Query: 264 FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
           F+D+PEAL N+VEIA+RC+  +++    LP F            E+ L  K+  GLE RL
Sbjct: 1   FADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERL 55

Query: 324 A---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                    +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGS
Sbjct: 56  EFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGS 115

Query: 381 GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
           GAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG 
Sbjct: 116 GAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGR 175

Query: 441 E 441
           +
Sbjct: 176 D 176


>gi|32481340|gb|AAP84017.1| catalase [Vibrio cholerae]
          Length = 178

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 95/182 (52%), Positives = 123/182 (67%), Gaps = 8/182 (4%)

Query: 273 NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIA 329
           N+VEIA+RC+  +++    LP F            E+ L  K+  GLE RL         
Sbjct: 2   NSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEV 56

Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
           +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYA
Sbjct: 57  RAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYA 116

Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
           L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + V+ IITF
Sbjct: 117 LKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSHIITF 176

Query: 450 GS 451
           G+
Sbjct: 177 GT 178


>gi|32481348|gb|AAP84021.1| catalase [Vibrio cholerae]
          Length = 177

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 96/182 (52%), Positives = 123/182 (67%), Gaps = 8/182 (4%)

Query: 271 LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGA 327
           L N+VEIA+RC+  +++    LP F            E+ L  K+  GLE RL       
Sbjct: 1   LANSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDP 55

Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
             +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ A
Sbjct: 56  EVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVA 115

Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
           YAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + V+QII
Sbjct: 116 YALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQII 175

Query: 448 TF 449
           TF
Sbjct: 176 TF 177


>gi|32481336|gb|AAP84015.1| catalase [Vibrio cholerae]
          Length = 175

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 95/180 (52%), Positives = 122/180 (67%), Gaps = 8/180 (4%)

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAK 330
           +VEIA+RC+  +++    LP F            E+ L  K+  GLE RL         +
Sbjct: 1   SVEIAKRCNVPVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVR 55

Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL
Sbjct: 56  AKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYAL 115

Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
            ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + V+QIITFG
Sbjct: 116 KITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQIITFG 175


>gi|227495220|ref|ZP_03925536.1| possible DNA-directed DNA polymerase [Actinomyces coleocanis DSM
           15436]
 gi|226831672|gb|EEH64055.1| possible DNA-directed DNA polymerase [Actinomyces coleocanis DSM
           15436]
          Length = 583

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/271 (37%), Positives = 155/271 (57%), Gaps = 9/271 (3%)

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV------KVDLSLIPFDDHETYH 610
           Q++ ++  +AGL+KF  LGL  LT L++    L ++G       K+DL  +P +D +   
Sbjct: 311 QWDKEYCAEAGLVKFVLLGLGMLTALRRMFSALEKQGYVQADGRKLDLYSLPAEDPQVCD 370

Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGK 668
           LL    T+G+FQ+ES      L  ++P C  D++  V L RPGPI    V  Y  R  GK
Sbjct: 371 LLCADDTVGVFQVESRAQMNTLPRLRPRCFYDLVVEVVLIRPGPIQGNAVNPYLRRCLGK 430

Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE-MDK 727
           E +  +  L+ P+L+ T GV  +QEQ+MQIA   +G+S +EAD LR+AMG K  EE M K
Sbjct: 431 EPVRYVDELLKPILERTLGVPFFQEQLMQIAVEAAGFSAAEADQLRKAMGSKRSEERMRK 490

Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            K +  +G ++NGI    A  IFE  + FA++ F +SHA ++A I Y +AWMK H+P EF
Sbjct: 491 LKPQLYAGLAQNGIVGERAEEIFEYFSGFAEFSFPESHAFSFAYIVYASAWMKVHFPHEF 550

Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            A+ +  +      +     DA +  ++++P
Sbjct: 551 YASIIASQPMGFYSVYSLVADAHRRGVRVLP 581



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 102/301 (33%), Positives = 148/301 (49%), Gaps = 12/301 (3%)

Query: 167 AEKRLLTF-KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEED 224
           A KR L F  ++F  +L V        DR Y   Q+  LA   +LPLVAT  +       
Sbjct: 12  AGKRQLDFLSEVFSRKLAVESTLVTERDREYVSQQLGLLAKQADLPLVATTAARAADLRS 71

Query: 225 YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
                VL A+     +SQ +         L++ ++MV I    PEA+ N  ++A   +F 
Sbjct: 72  LRKSHVLRAIQMQGSLSQVEPFLEAFLPILRSAADMVQIHKYHPEAVTNAAQLAGEIAFD 131

Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            ++ AP LP           + E   LR  A  G ++R    A       +   + +D E
Sbjct: 132 FRLLAPQLP----VGQVSAGETETAWLRKCAYEGAKLRYDSRA-----ENRKAWETIDHE 182

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           L +IA + F GYFLIV + + + K N+I +  GRGS A S   YAL IT +D +   L+F
Sbjct: 183 LKIIANLGFCGYFLIVKEIVDFCKANDI-LCQGRGSAANSAVCYALGITAVDAVYHRLMF 241

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           ERFL+PDR   PD DID    RR+EVI++V  KYG    AQ+    + + ++A+RD  +A
Sbjct: 242 ERFLSPDRSGPPDIDIDIEAKRREEVIQHVFEKYGRHNAAQVANVITYRHRSAIRDAAKA 301

Query: 465 L 465
            
Sbjct: 302 F 302


>gi|325522049|gb|EGD00722.1| DNA polymerase III, alpha subunit [Burkholderia sp. TJI49]
          Length = 335

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/329 (33%), Positives = 177/329 (53%), Gaps = 15/329 (4%)

Query: 573 FLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            L L  L++++++LD +++ RG   +L  IP +D  TY +L    ++G+FQ+ES      
Sbjct: 1   MLALGMLSMVRRALDMISEKRGETFELQDIPAEDKATYDMLCDGDSMGVFQVESRAQMSM 60

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
           L  ++P C  D++  V++ RPGP+   +V  Y  R+ G E +      ++  LK T GV 
Sbjct: 61  LPRLRPQCFYDLVIEVAIVRPGPVQGGMVHPYLRRRQGLEPVTFPSDGMEKALKRTLGVP 120

Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVN 748
           I+QEQVMQ+A L +G+S  EAD LRRAM   K K  ++   +R +SG  + G  +  A  
Sbjct: 121 IFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKRKGGLEPYHDRLVSGMLERGYDREFAEA 180

Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
           IF  +  F +YGF +SHAA++A++ Y +AW++ H P  FLAA +  +        +  QD
Sbjct: 181 IFAQIKGFGEYGFPESHAASFALLVYSSAWLRRHEPAVFLAALLNSQPMGFYSPSQLLQD 240

Query: 809 ARQFNIQIMPPSVNTPCVDFKV------GDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
           AR+  ++++P  VN    D  +         R+ +SL  ++G+    A  I  A A +PF
Sbjct: 241 ARRRGVEVLPVDVNVSTWDSVIEGPTTSAPVRLGFSL--LRGMRADVAGRIELARAVRPF 298

Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             + D   R    +L+R  L  L  A AL
Sbjct: 299 VDVADLARRA---QLDRHDLLVLARANAL 324


>gi|330901815|gb|EGH33234.1| error-prone DNA polymerase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 377

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/363 (33%), Positives = 191/363 (52%), Gaps = 30/363 (8%)

Query: 271 LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK---AVAGLEVRLAQGA 327
           L  +V IARRC+F L                D++ E  +EL  K   + + L     +G 
Sbjct: 32  LAESVRIARRCTFDL---------------GDLKYEYPHELVPKGQTSTSWLRELTERGV 76

Query: 328 IAK--GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
             +  G      R +++ EL +IA  KF  YFL V D +++A+  +I +  GRGS A S 
Sbjct: 77  RRRWPGGLTPATRAQVEKELALIAEKKFDSYFLTVHDIVEFARSQHI-LCQGRGSAANSA 135

Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             YAL IT+++P + +LLFERF++ +R   PD D+DF  DRR+EVI+Y+  +YG  R A 
Sbjct: 136 VCYALGITELNPEQSNLLFERFISRERNEPPDIDVDFEHDRREEVIQYIFRRYGRGRAAL 195

Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL-A 504
                +     A+RDV + L +P  Q++ L +      A      ++    R RE    A
Sbjct: 196 TAVASTYHGSGAMRDVAKVLGLPPDQINALAE------AFSRWSDSLPSPERLREYGFDA 249

Query: 505 D-PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563
           D P + R+L ++ +L G  RH S H  G VI + PL  LVP+     +D  + Q++   +
Sbjct: 250 DTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLVPVENAAMADRTIIQWDKDDL 309

Query: 564 EKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
           +  GL+K D L L  L+ L+++ D +   R  +  L+ +P DD +TY +++   T+G+FQ
Sbjct: 310 DLVGLLKVDILALGMLSALRRTFDLVHLHRDQRWTLASLPGDDRKTYEMISRADTVGVFQ 369

Query: 623 LES 625
           +ES
Sbjct: 370 IES 372


>gi|213420366|ref|ZP_03353432.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 192

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 90/175 (51%), Positives = 126/175 (72%), Gaps = 7/175 (4%)

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
           +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+
Sbjct: 18  LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 77

Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            + +V N  +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L 
Sbjct: 78  QSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 137

Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNK
Sbjct: 138 GADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNK 192


>gi|182418219|ref|ZP_02949519.1| DNA polymerase III subunit alpha [Clostridium butyricum 5521]
 gi|237666115|ref|ZP_04526102.1| DNA polymerase III subunit alpha [Clostridium butyricum E4 str. BoNT
            E BL5262]
 gi|182378037|gb|EDT75577.1| DNA polymerase III subunit alpha [Clostridium butyricum 5521]
 gi|237658205|gb|EEP55758.1| DNA polymerase III subunit alpha [Clostridium butyricum E4 str. BoNT
            E BL5262]
          Length = 496

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 114/374 (30%), Positives = 186/374 (49%), Gaps = 36/374 (9%)

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG-----------ASKNGISKT 744
            M+I + L+GYS+  +D++RRAM KK  + M+++++ FI G             +NGIS+ 
Sbjct: 1    MEIVRKLAGYSMGRSDMVRRAMSKKKHKVMEEERKNFIHGIIENDEVVVPGCIRNGISEN 60

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +A  IF+ +  FA Y FNKSHAAAYAV+ YQTA++  +YPVE +AA +   M   EK+  
Sbjct: 61   VANKIFDNMMDFASYAFNKSHAAAYAVVGYQTAYLMRYYPVEMIAAMLNSIMGTSEKVAH 120

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFD 863
            +   A    IQ++PP +N     F V  + I + +AAIK VG      I++A  +K  F+
Sbjct: 121  YINFAESLGIQVLPPDINESYSRFTVKGDTIRFGMAAIKNVGANVVDSIVKARENKGKFE 180

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            SL DF +++D   +N+R +E L+ AGALD F   R ++L   + +       +K   +  
Sbjct: 181  SLVDFINKMDVSTINKRAVECLIKAGALDNFNVYRSKMLAVHEKLIDSISSDKKRNIDGQ 240

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI--- 980
             ++F   +   + +++       +       E+ + G Y +GHPLD Y   L+       
Sbjct: 241  ISLFGATEELKNPEVSYPNIKEFDKRNLLAMEKEMTGLYITGHPLDDYAKSLKMQTTIEI 300

Query: 981  -----------KGYEESVATI---RGNNIR-------LAAMVVSKQQKKTRKGSRIGWVT 1019
                       +  EE++  +    G NI        L  ++ S  QK TR  + + ++T
Sbjct: 301  AKIFSVHETLDEVLEENIPDVNIFEGKNILKDNDRVVLGGILASVNQKVTRNNTIMAFLT 360

Query: 1020 FSEPAKEYEANFFP 1033
              +     E   FP
Sbjct: 361  LEDLTGSIEVIVFP 374


>gi|32481334|gb|AAP84014.1| catalase [Vibrio cholerae]
          Length = 174

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 93/178 (52%), Positives = 120/178 (67%), Gaps = 8/178 (4%)

Query: 273 NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIA 329
           N+VEIA+RC+  +++    LP F            E+ L  K+  GLE RL         
Sbjct: 2   NSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEV 56

Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
           +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYA
Sbjct: 57  RAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYA 116

Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
           L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + V+QII
Sbjct: 117 LKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQII 174


>gi|328912208|gb|AEB63804.1| putative DNA polymerase yorL [Bacillus amyloliquefaciens LL3]
          Length = 1309

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 191/833 (22%), Positives = 355/833 (42%), Gaps = 121/833 (14%)

Query: 176  KLFG-DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            K+FG D+ ++ LQ     ++ Y   ++V +A  + L ++ T ++ FL  ED         
Sbjct: 196  KVFGKDKFFIELQPALSEEQIYCNKKLVNIANGYGLKVIVTTDAHFLRPED--------R 247

Query: 234  VAHSTVVSQKDRPRVTPDHY----LKNRSEMVSIFSDL-----PEALENTVEIARRCSFI 284
              H   ++ KD  R     Y    ++N  E+      L      EA+ENT+ I       
Sbjct: 248  AIHQAFLNAKDGEREVDSFYEACFVQNVDEIHERMDYLDKEIIKEAIENTLLIGEMIEDY 307

Query: 285  LQVHAPILPRFIEKECD-------------------DIQKEEENELRNKAVAGLEVRLAQ 325
               H PI+P+    E +                   +  +E++  L      G + +L +
Sbjct: 308  TIEHEPIIPKMALPEFELSHLFKPAYEKYKYIKLMAESDEEQDRYLLKLIEDGFKAKLMK 367

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMK------FSGYFLIVADFIQ--WAKK--NNIPVG 375
              ++K        +R+D EL  +  +        S Y++ V + I   W  +   +  VG
Sbjct: 368  KDMSKK-ELHSILKRIDLELGELWEISEKLKQAMSSYYVTVREIINTIWDDECGGDSLVG 426

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
              RGS AG +  Y L IT I+P++++L   R ++  R  +PD DID    +R  +++ ++
Sbjct: 427  AARGSAAGFLVNYLLDITQINPMQYNLPHWRHIHKSRPDLPDIDIDTEGSKRSRILKALR 486

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
            +K+G +RV QI TFG+ ++K+AL+   R L +       L  +IP +     +L     D
Sbjct: 487  DKFGEKRVLQICTFGTEKSKSALQTACRGLGIDNDISQYLSGMIPFERGANWTLS----D 542

Query: 496  SRFREARLADPSVDRLL----------EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              F    L    +   +          E   K+EGL    S+HAAG++I +   ++   M
Sbjct: 543  CFFGNEELGRKPIKEFIREVEGYPNLKETCLKIEGLTNKRSSHAAGVLIFNDEYTKSNAM 602

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-------AQRGVKVDL 598
             R  +    +TQFNM   E  G +K+D L ++ L  ++ +LD L       +Q  +K   
Sbjct: 603  MRTPKGAY-ITQFNMGDSEAMGSVKYDLLTIEGLDKIRVALDQLIEDNQIESQGTLKRTY 661

Query: 599  S------LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR- 651
            +       + ++    + +      + +FQ ++    Q++  ++P  + +     SL R 
Sbjct: 662  TKYLHPDTLEYNSKRIWEMAGEGEIMDLFQFDTEVGNQSVVKVKPKNLLETAVTNSLMRL 721

Query: 652  -----PGPIDNIV--------VYNNRKNGKEKIVSIHPLIDPMLKETQ---GVIIYQEQV 695
                   P+D  V         Y   +N       +  L   + K  +   G+   QE V
Sbjct: 722  MSEGEEQPVDTYVRFKKDIDHWYQEMRNYNLSSEEMDVLKKHLYKPEEGLYGIADTQESV 781

Query: 696  MQIA--QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL- 752
            M ++  + ++G+++ E++ LR+ + KKIK+ +D  K  F       G S+ +   ++E+ 
Sbjct: 782  MMLSMDKEIAGFTIEESNKLRKGIAKKIKKMIDAIKTMFFEKGRSLGTSENLLKYVWEVQ 841

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHY-PVEFLAASMTLEMDNVE----------- 800
              +   Y F+  H  AY++I+ Q   +   Y P+ +  A +T+    +E           
Sbjct: 842  FKRQFGYSFSSLHTLAYSIIALQELNLNYKYNPLYWSTACLTVNSGGIESEEDQATKKSA 901

Query: 801  -----KIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLAAIKGVGTTTARHI 853
                 K+     + R+  I++  P +N+    FK     N I + L  + G+G      I
Sbjct: 902  ATNYGKVAAAIGNIRKRGIKVDLPDINSANFGFKADTESNSIIFGLKGMNGIGDDVVHQI 961

Query: 854  MEASADKPFDSLEDFCSRV-DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            +    ++P+   +DF  R+  S  L +  +  L+  G  D FG  R ++++S 
Sbjct: 962  I---VNRPYSDFDDFIERMFKSSILKKGQMIQLIKGGCFDSFG-DRQKIMKSF 1010


>gi|167470458|ref|ZP_02335162.1| DNA polymerase III, alpha subunit [Yersinia pestis FV-1]
          Length = 353

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/362 (34%), Positives = 187/362 (51%), Gaps = 24/362 (6%)

Query: 4   YLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           YL+ + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A
Sbjct: 9   YLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSA 68

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
             AGI+PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y  
Sbjct: 69  HGAGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQR 118

Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDR 181
             G     I   WL +   EGLI+L+GG  G + + F    +QV   + L F ++ F D 
Sbjct: 119 GYGAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGK-FLLRGNQVQVDQCLAFYQEHFPDC 176

Query: 182 LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            Y+ L R  R  +       V LA    LP+VATN+  F+ E D++AH++ +A+     +
Sbjct: 177 YYLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTL 236

Query: 241 SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
               RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E
Sbjct: 237 VDPKRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGE 296

Query: 300 CDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                   E+ L  KA  GLE RL         +     +Y +RLD EL VI +M F GY
Sbjct: 297 M-----STEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELQVINQMGFPGY 351

Query: 357 FL 358
           FL
Sbjct: 352 FL 353


>gi|255019086|ref|ZP_05291212.1| hypothetical protein LmonF_17486 [Listeria monocytogenes FSL
           F2-515]
          Length = 188

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 80/148 (54%), Positives = 110/148 (74%)

Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
             +Y++RL++EL VI  M F+ YFLIV D I+++++  +  GPGRGS AGS+ +YAL IT
Sbjct: 8   GMEYQERLEYELKVITEMGFADYFLIVWDVIRYSREAGVLTGPGRGSAAGSLVSYALRIT 67

Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
           D+DP+R++LLFERFLNP+R++MPD D+DF  +RRDEVI YV +KYG   VAQI TFG+L 
Sbjct: 68  DVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRDEVISYVVSKYGEAHVAQIGTFGTLA 127

Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPN 481
           AKAA+RD  R+  +    +    KLIP+
Sbjct: 128 AKAAIRDTARSFGLNSVLLSEWSKLIPS 155


>gi|19548812|gb|AAL90803.1| polymerase III subunit alpha [Escherichia coli]
          Length = 209

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 90/207 (43%), Positives = 138/207 (66%), Gaps = 12/207 (5%)

Query: 504 ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563
           AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +
Sbjct: 3   ADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDV 62

Query: 564 EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTL 618
           E AGL+KFDFLGL+TLT++  +L+ + +R  K     +D++ IP DD +++ +L    T 
Sbjct: 63  EYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETT 122

Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-- 674
            +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V N  +RK+G+E+I     
Sbjct: 123 AVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDV 182

Query: 675 ---HPLIDPMLKETQGVIIYQEQVMQI 698
              H  + P+L+ T G+I+YQEQVMQI
Sbjct: 183 QWQHESLKPVLEPTYGIILYQEQVMQI 209


>gi|254838526|gb|ACT83411.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|254838528|gb|ACT83412.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|254838530|gb|ACT83413.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|254838532|gb|ACT83414.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|254838534|gb|ACT83415.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|254838536|gb|ACT83416.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 252

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/258 (39%), Positives = 152/258 (58%), Gaps = 15/258 (5%)

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
           +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L R    D
Sbjct: 3   AWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRAD 61

Query: 194 RYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
              ES +   + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    RP+  +
Sbjct: 62  E--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYS 119

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
           P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F            E+
Sbjct: 120 PKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIED 174

Query: 310 ELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW
Sbjct: 175 FLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQW 234

Query: 367 AKKNNIPVGPGRGSGAGS 384
           +K N+IPVGPGRGSGAGS
Sbjct: 235 SKDNDIPVGPGRGSGAGS 252


>gi|156902008|gb|ABU96797.1| DNA polymerase III alpha subunit [Vibrio cholerae]
          Length = 170

 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 90/175 (51%), Positives = 117/175 (66%), Gaps = 8/175 (4%)

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAK 330
           +VEIA+RC+  +++    LP F            E+ L  K+  GLE RL         +
Sbjct: 1   SVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVR 55

Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL
Sbjct: 56  AKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYAL 115

Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
            ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + V+Q
Sbjct: 116 KITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQ 170


>gi|3676693|gb|AAC62072.1| DNA polymerase [Treponema denticola]
          Length = 361

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 193/369 (52%), Gaps = 25/369 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL VHS +SLL+GA S+  +  K     Q A+A+TD  N+F A+ F        I+PI
Sbjct: 5   FVHLHVHSDFSLLDGAASVKALAAKAEKLGQTALALTDHGNMFGAINFYNACKEKNIKPI 64

Query: 71  IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IGC+  +  +     K T  GK  +     ++LL     GY+ L+ L S+ Y  +     
Sbjct: 65  IGCEFYVAPESRFEKKETPGGKKYY----HLILLAKNETGYRNLMVLCSKGY-TEGMYYK 119

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
            RI    L +   EGLI L+   +G +         + AE  +  ++++FG +  ++ LQ
Sbjct: 120 PRIDDELLAQY-AEGLICLSACLAGELPVLLLNGEKEKAEAHVRKYREIFGAENYFIELQ 178

Query: 188 RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H   +  + S+ ++++A    +PLV TN+  ++ ++DY A D+LM +    + +  +R 
Sbjct: 179 DHGLKEEKKASKLLIEMARKVGVPLVLTNDIHYVEQKDYVAQDILMCIGMKKLRTDTNRM 238

Query: 247 RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           +    + Y K+  EM  +F + PEA+ NTV IA  C+  +    PILP  I K  +D   
Sbjct: 239 QFEGSEFYFKSGEEMAQLFPEYPEAILNTVRIAEMCNLEIPQPGPILP--IYKIPEDFSS 296

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADF 363
           +E+  +R+         LA+G++ K Y     + + RL++EL+++ +M F GYFLIV DF
Sbjct: 297 KEDY-IRH---------LAEGSLKKRYPVITDEIKNRLNYELDIVIKMDFVGYFLIVWDF 346

Query: 364 IQWAKKNNI 372
           I WAK N +
Sbjct: 347 INWAKNNGV 355


>gi|219883037|ref|YP_002478201.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6]
 gi|219862043|gb|ACL42384.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6]
          Length = 752

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 208/820 (25%), Positives = 346/820 (42%), Gaps = 128/820 (15%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +FVHL  HS YS    A ++  ++   AAD Q A+A+TDTN L +A     +A   GI+P
Sbjct: 3   TFVHLNGHSEYSSDSNA-TIKELVAAAAADGQGALALTDTN-LAAAPLLRAEARRHGIKP 60

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIG  LD+ + +N   T+  +     V  + LL     G+  L+ L +   +  + +  V
Sbjct: 61  IIG--LDVRLVENRHSTDHQQ-----VFHLTLLAENRTGWHNLVALYNSSAVPGRSQSFV 113

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
              L  L     +GLI LTGG  GP++     N +  A       +   G  R+++    
Sbjct: 114 DHELLALH---ADGLIALTGGRRGPVEAFLDLNDADTARANFARLESTLGTGRVFLEASS 170

Query: 189 HRGYDRYRESQVVQLAYT-HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                    +Q++   +    + +VAT      + ED EA   LM      + + K+   
Sbjct: 171 PE------SAQLLTGVFMGRAVHVVATGRYRQTALEDTEARQTLM-----DIRAGKEGRG 219

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA-----PILPRFIEKECDD 302
                +L+  SEM     D  +A +N V IA      +   A       +P F     D 
Sbjct: 220 YGEGGWLRTESEMRRQAPD-SQAWQNAVTIAATVGDAIHYDAIPEPGGNMPSFAVP--DG 276

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            Q   E  LR+    G   R  + +        +  +RL+ EL VI     +   LI  D
Sbjct: 277 FQSSGEY-LRHLTFRGAGSRFDEISF-------EAIERLNNELEVIISKGAADSILITHD 328

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            I+W   N+I  G  RG+ + S+  Y L ITDI+PL + L +ERFL P R  +P  DID 
Sbjct: 329 LIKWCTDNDILTG-ARGNSSSSLVLYCLGITDINPLTYGLRYERFLRPGRTEIPGLDIDI 387

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              R  +   Y+  ++  +RVA+  T   ++A                            
Sbjct: 388 QASRMQDAHGYLSKRW-PDRVARAATHSRVKA---------------------------- 418

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                       D+  R   +++       E +  ++G + + + H   +VI  R L+  
Sbjct: 419 ------------DTWTRRGLVSE-------EKAALVDGRFLNRNIHPCAVVIAARDLTDQ 459

Query: 543 VPMYRDVRS----DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597
           +P+  D R+    +LPV  +  + +   G +  + LG  TL ++ ++       RG  V 
Sbjct: 460 LPVLPDRRAGHEHELPVANWEAQTLLNEGYLVLNLLGSATLDVVAQAAALARLDRGSPVH 519

Query: 598 LSLI-PFDDH-------ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
           L L+ P  D          + L+T   T G+F L +     A +  +P  + D+  L +L
Sbjct: 520 LGLLLPVGDDLYARSTPAAWDLITAGDTDGVFGLGAEEAVAAAKLARPRNLTDMAVLTAL 579

Query: 650 YRPGPIDNIVVYNNRKNGKEKIVSIH-----------PLIDPMLKETQGVIIYQEQVMQI 698
              G  +    Y   +  + ++   H             +  +L  T G +++QEQVM +
Sbjct: 580 --SGKEERRNRYLTARINRPRLRYYHLEHLTSEESEQAYLCRILAPTHGELVFQEQVMDL 637

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA--SKNG---------ISKTIAV 747
              + G+S  +A+   R + KK ++     +E+F++GA   K G          S   A 
Sbjct: 638 FSTVGGFSDVDAEGAWRFLAKKPRD-WSGLREKFLAGAVQEKRGRAGDPYSMVFSAGTAE 696

Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +F+L+ +   + F+ SHA AYAV ++QTAW++ H+P  F
Sbjct: 697 QVFDLIMEAVPFLFSASHAHAYAVRTFQTAWLRAHFPEAF 736


>gi|156901996|gb|ABU96791.1| DNA polymerase III alpha subunit [Vibrio cholerae]
 gi|156901998|gb|ABU96792.1| DNA polymerase III alpha subunit [Vibrio cholerae]
 gi|156902000|gb|ABU96793.1| DNA polymerase III alpha subunit [Vibrio cholerae]
          Length = 168

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 89/173 (51%), Positives = 115/173 (66%), Gaps = 8/173 (4%)

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 1   EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 55

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL I
Sbjct: 56  RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKI 115

Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
           TD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + V+Q
Sbjct: 116 TDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQ 168


>gi|156902004|gb|ABU96795.1| DNA polymerase III alpha subunit [Vibrio cholerae]
          Length = 166

 Score =  171 bits (432), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 88/171 (51%), Positives = 113/171 (66%), Gaps = 8/171 (4%)

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 1   EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 55

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL I
Sbjct: 56  RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKI 115

Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
           TD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + V
Sbjct: 116 TDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAV 166


>gi|322648191|gb|EFY44658.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
          Length = 321

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/289 (33%), Positives = 158/289 (54%), Gaps = 13/289 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4   PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64  PIVGADFNV---HNELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114 PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172

Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
             +P  Y+++  EM  +F+D+PEALENTVEIA+RC+  +++    LP+F
Sbjct: 233 NYSPQQYMRSIDEMCELFADIPEALENTVEIAKRCNVTVRLGEYFLPQF 281


>gi|9630258|ref|NP_046685.1| putative DNA polymerase [Bacillus phage SPBc2]
 gi|16079093|ref|NP_389916.1| DNA polymerase; phage SPbeta [Bacillus subtilis subsp. subtilis str.
            168]
 gi|221309940|ref|ZP_03591787.1| hypothetical protein Bsubs1_11236 [Bacillus subtilis subsp. subtilis
            str. 168]
 gi|221314262|ref|ZP_03596067.1| hypothetical protein BsubsN3_11157 [Bacillus subtilis subsp. subtilis
            str. NCIB 3610]
 gi|221319184|ref|ZP_03600478.1| hypothetical protein BsubsJ_11083 [Bacillus subtilis subsp. subtilis
            str. JH642]
 gi|221323460|ref|ZP_03604754.1| hypothetical protein BsubsS_11212 [Bacillus subtilis subsp. subtilis
            str. SMY]
 gi|81555926|sp|O31902|YORL_BACSU RecName: Full=Probable DNA polymerase yorL
 gi|2634427|emb|CAB13926.1| putative DNA polymerase; phage SPbeta [Bacillus subtilis subsp.
            subtilis str. 168]
 gi|3025611|gb|AAC13106.1| putative DNA polymerase [Bacillus phage SPbeta]
          Length = 1305

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 187/832 (22%), Positives = 364/832 (43%), Gaps = 123/832 (14%)

Query: 176  KLFG-DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++FG D+ ++ LQ     ++ Y   +++ +A  ++L ++ T ++ +L  ED         
Sbjct: 196  EVFGKDKFFIELQPALSEEQIYCNKKLIDIANGYDLQMIVTTDAHYLRPED--------R 247

Query: 234  VAHSTVVSQKDRPRVTPDHY----LKNRSE----MVSIFSD-LPEALENTVEIARRCSFI 284
              H   ++ KD  R     Y    ++N  E    M  I  + + +A++NT+ I       
Sbjct: 248  AIHQAFLNAKDGEREVDSFYEACFVQNVDEIHERMDYIDKEVIDQAIKNTMLIGEMIEDY 307

Query: 285  LQVHAPILPR--------------------FIEKECDDIQKEEENELRNKAVAGLEVRLA 324
               H PI+P+                    +I+K  +    E++  L      G E +L 
Sbjct: 308  TIEHEPIIPKMELPNFKLRHLFKPAYDQYEYIKKMSESAD-EQDRYLLKLIEDGFEEKLK 366

Query: 325  QGAIAK-GYHAQDYRQRLDFELNVIARMK------FSGYFLIVADFIQ--WAKK--NNIP 373
               + +  +H      R++ EL  +  +        S Y++ V + I   W  +   +  
Sbjct: 367  TSELTREAFHK--ILNRINVELGELWEISQKLNQSMSSYYITVREIINIIWDDECGGDSL 424

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VG  RGS AG +  Y L  T I+P+++ L   R ++  R  +PD DID    +R ++++ 
Sbjct: 425  VGAARGSAAGYLVNYLLDNTQINPMQYDLPHWRHIHKSRPDLPDIDIDTEGSKRQKILKA 484

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH--PVSLQA 491
            ++ ++G +RV QI TFG+  +K+AL+   R L +       L  +IP +     P+    
Sbjct: 485  LRERFGDKRVLQIATFGTEGSKSALQTACRGLGIDNDISQYLSGMIPFERGSNWPLKHCF 544

Query: 492  IADDSRFREARLADPSVDRLLEISQ---------KLEGLYRHASTHAAGIVIGDRPLSQL 542
              D    R+     P  + + E+ Q         K+EGL    S+HAAG++I +   ++ 
Sbjct: 545  YGDKETGRK-----PIKEFIREVEQYPNLKETALKIEGLTNKRSSHAAGVIIFNDEYTKS 599

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-------QRGVK 595
              M +  +    +TQFNM   E  G +KFD L ++ L  ++ +LD L        Q  +K
Sbjct: 600  NAMMKTPKGAY-ITQFNMGDSEAMGSVKFDLLTIEALDKIRVTLDQLIENNEIEWQGSLK 658

Query: 596  ------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                  +   +I ++D + + +      + +FQ  +    Q++  ++P  + +     SL
Sbjct: 659  ETYNKYIHPDVIEYEDDKLWEMAGNGEIMDLFQFSTEVGHQSVVKVKPKNLLEAAVTNSL 718

Query: 650  YR------PGPIDNIVVYNNRKNGKEKIVSIHPL-------IDPMLKETQGVIIYQEQVM 696
             R        P+D  V Y N  N   + ++ + L       ++  LK+  GV   QE VM
Sbjct: 719  MRLMSDGEEQPVDTYVKYKNNLNKWYEEMTRYGLSEKEIRVMERHLKDIYGVADTQEVVM 778

Query: 697  QIA--QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL-L 753
            Q+   + ++ + + E++ LR+++ KK ++ + + +E F     + G S  +   ++ +  
Sbjct: 779  QMVMDKDIANFDIKESNYLRKSIAKKKEDVLKEVEELFFKKGKEIGTSDNLLNYVWNVQF 838

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHY-PVEFLAASMTLEMDNVE------------ 800
             +   Y F+  H  AY++I+ Q   +   Y P+ +  A +T+    ++            
Sbjct: 839  KRQFGYSFSLLHTLAYSIIALQELNLNYRYNPLYWNTACLTVNSGGIDTEDTKDNKKTAA 898

Query: 801  ----KIKKFCQDARQFNIQIMPPSVNTPCVDFK--VGDNRIYYSLAAIKGVGTTTARHIM 854
                K+     + RQ  I+I  P +N     F+  + +N I + L  + G+G     HI+
Sbjct: 899  TNYGKVASAIGNIRQRGIKIDLPDINKADFGFRTDINNNSILFGLKGMNGIGDDVIHHIV 958

Query: 855  EASADKPFDSLEDFCSRV-DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                ++P+    DF  R+  S  + +  +  L+  G  D FG +R +++++ 
Sbjct: 959  ---LNRPYSDFNDFIERMFKSGIIKKGQVIQLIKGGCFDSFG-NRQEIMKAF 1006


>gi|32481350|gb|AAP84022.1| catalase [Vibrio cholerae]
          Length = 160

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 82/142 (57%), Positives = 103/142 (72%), Gaps = 3/142 (2%)

Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
           E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +FI
Sbjct: 19  EDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFI 78

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           QW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC 
Sbjct: 79  QWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCM 138

Query: 425 DRRDEVIRYVQNKYGHERVAQI 446
           D+RD+VI +V   YG + V+QI
Sbjct: 139 DKRDQVIDHVAEMYGRDAVSQI 160


>gi|284928952|ref|YP_003421474.1| DNA polymerase III subunit alpha [cyanobacterium UCYN-A]
 gi|284809411|gb|ADB95116.1| DNA polymerase III, alpha subunit [cyanobacterium UCYN-A]
          Length = 450

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 163/291 (56%), Gaps = 17/291 (5%)

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A   FNKSH+ AYA I+YQTA++K +YPVE++AA +T   DN +KI+K+ ++ ++  IQ+
Sbjct: 34   ASNCFNKSHSTAYAYITYQTAYLKANYPVEYMAALLTANSDNQDKIEKYRENCQKMGIQV 93

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA--SADKPFDSLEDFCSRVDS 874
            +PP ++    DF   +N+I + L+A++ +G      I++A    +  F+SL DFCS  DS
Sbjct: 94   LPPDISLSLKDFTPLENQILFGLSAVRNLGEGAIDSILKARIQLNTKFNSLADFCSNTDS 153

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------- 927
            + +N+R LE+L+++GA D    +R QL+  LD +  +AQ   K++ +   N+F       
Sbjct: 154  RTVNKRALETLIYSGAFDSVSNNRKQLINDLDLVISWAQKKAKDKESGQLNLFDLITNNA 213

Query: 928  -----AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
                   E        ++E FS+++  ++FE E   LGFY S HPL + +  +  +    
Sbjct: 214  DNSNLDLEYEDVPSSPSVEDFSLQD-KLKFEKE--YLGFYISEHPLRIIEEPVSILSPVS 270

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++E +      NI + + +   ++  T+KG ++ ++   + ++  E   FP
Sbjct: 271  FDEIIVQKAKRNITILSTIAEIKEYTTKKGDQMAFLVLEDTSRHIEGVCFP 321


>gi|319937868|ref|ZP_08012268.1| hypothetical protein HMPREF9488_03104 [Coprobacillus sp. 29_1]
 gi|319806774|gb|EFW03413.1| hypothetical protein HMPREF9488_03104 [Coprobacillus sp. 29_1]
          Length = 454

 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 143/466 (30%), Positives = 206/466 (44%), Gaps = 80/466 (17%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA----- 65
           F+HL V S +SL+ G   ++N+L+K A  +  A+AITD N + +  +F Q A        
Sbjct: 2   FIHLNVKSCFSLMNGFNKIDNVLEKTARMKSNAVAITDINTMHTFYDFEQAALKKTKKTK 61

Query: 66  -----GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
                 I PI G    +  +    + N+         +I LL     GYQ LI L +   
Sbjct: 62  SLKRDSIHPIFGITFIVKAR---YVENE-------FFNITLLAKNEIGYQHLIALSTIAN 111

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                +Q   +    L+  G EGL  L+GG  G +      +    A   L   K  FG+
Sbjct: 112 --TNHEQFAYLTFEDLKHHG-EGLFCLSGGEEGEVFDLVVNDRIDEAVMLLKDLKAFFGE 168

Query: 181 RLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            LY+ +  H  +  +++ ES +++ A +  +  VATNN+ +L +ED +     +AV+ ++
Sbjct: 169 NLYLEVSNHFMKEEEKFIESGIIEKALSIGIDYVATNNAYYLRKEDAQYRS--LAVSMNS 226

Query: 239 VVSQKDRPRVTPDH-------------YLKNRSEMVSIFS----DLPEALENTVEIARRC 281
            ++      V   H             YLK   EM   FS      P  LENT++IA  C
Sbjct: 227 ELNSLKANEVDWIHNYASRHVDFNSEWYLKTEVEMTKAFSKYLLKYPNLLENTLKIANAC 286

Query: 282 SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA-QGAIAKGYHAQDYRQR 340
               Q   P L  F E         EE+  R   + G E R     A    +  QDY  R
Sbjct: 287 ----QATVPKLQTFPEFPLPQ-GYTEESYFRELMLKGFEERFPDDSAFDPRFTRQDYIDR 341

Query: 341 LDFELNVIARMKFSGYFLIVADFIQWA-----------------------------KKN- 370
           +++E   +  M F GY LIV D+I +A                             KKN 
Sbjct: 342 MEYEFETVKEMGFLGYLLIVQDYINFAKDEKVFKHPERYFPRNCYPEYSRIPEGILKKNY 401

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            I VGPGRGSGAGS+  Y L IT+++PL   LLFERFLN +R+SMP
Sbjct: 402 KIAVGPGRGSGAGSLLCYLLKITNLEPLSLDLLFERFLNIERVSMP 447


>gi|23321267|gb|AAN23128.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 316

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/334 (33%), Positives = 173/334 (51%), Gaps = 25/334 (7%)

Query: 37  AADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTV 96
           AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +
Sbjct: 1   AAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDEL 50

Query: 97  PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
             + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + 
Sbjct: 51  TKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVG 109

Query: 157 RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVA 213
           RA    + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VA
Sbjct: 110 RALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVA 167

Query: 214 TNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALE 272
           TN  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL 
Sbjct: 168 TNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALA 227

Query: 273 NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIA 329
           N+VEIA+RC+  +++    LP F            E+ L  K+  GLE RL         
Sbjct: 228 NSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEV 282

Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
           +     +Y +RL  EL+VI +M F GYFLIV +F
Sbjct: 283 RAKRRPEYDERLQVELDVINQMGFPGYFLIVMEF 316


>gi|32481338|gb|AAP84016.1| catalase [Vibrio cholerae]
          Length = 162

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/164 (51%), Positives = 111/164 (67%), Gaps = 8/164 (4%)

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAK 330
           +VEIA+RC+  +++    LP F            E+ L  K+  GLE RL         +
Sbjct: 1   SVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVR 55

Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL
Sbjct: 56  AKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYAL 115

Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
            ITD+DP+ + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V
Sbjct: 116 KITDLDPVEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHV 159


>gi|323650995|ref|YP_004243638.1| putative DNA polymerase [Bacillus subtilis subsp. natto]
 gi|323461635|dbj|BAJ77051.1| putative DNA polymerase [Bacillus subtilis subsp. natto]
          Length = 1280

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 203/894 (22%), Positives = 387/894 (43%), Gaps = 111/894 (12%)

Query: 99  IVLLVSTAEGYQRLIELVSRMY---LLDQGKQSVRI----CLSWLQEIGTEGLIMLTGGS 151
            +L+  + +GY+ L +L S+ +      +G + V       +S +QE   E +I  T   
Sbjct: 114 FILIAKSQKGYEGLKKLSSKAWYNSFFYRGMERVPTYKDELMSLMQEYQGE-IIACTACV 172

Query: 152 SGPIDR---AFFFNSSQVAEKR----LLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQL 203
            G + +   A+  + +   +KR    ++  K +FG+ LY  LQ  +  D+   +++ +++
Sbjct: 173 GGELPQSLIAYHDDPTPENKKRVHDLIVWLKGVFGEDLYFELQPSKNRDQLVANEMMLKV 232

Query: 204 AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
           +  + +  + + ++ +L+++   AH + +  +      +++        Y+    E++  
Sbjct: 233 SEAYNVKCIVSTDAHYLNKKYAPAHKIYLTASEG----EREVDEFYATTYVMGYEELLEY 288

Query: 264 FSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL---------- 311
           F +  L   ++NT EI  +   I       +P+        I K E N+L          
Sbjct: 289 FDEELLDVLVDNTNEIRSKLGSITFAQETKVPK------AHIPKYEMNQLFVPHYMEYQY 342

Query: 312 -RNKAVAGLEVR------LAQGAIAKGYH-AQDYRQRLDFELNVIARMK------FSGYF 357
            R  A +  ++       +A+G +AK     ++   R++ EL+ +  +        S YF
Sbjct: 343 IRKYAESRYDIDRYYLHLIAEGMVAKKQELNKENLSRINTELDELYHITEKLGQPLSSYF 402

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           ++  D +    + ++ VG  RGS       Y L I  ++P++F+L   RFL+ +R  +PD
Sbjct: 403 VLSKDVVDLMWQVSL-VGVSRGSACCFYLNYLLDIVQLNPMKFNLPHWRFLSKERPELPD 461

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D+D    +R E+I+  +  YG E V  + TF +   ++ +    R L +       +  
Sbjct: 462 IDLDSEGSKRHEIIQITKEHYGEENVLNMGTFTTEGTRSTVLTSCRGLGIDKDIAHNIAN 521

Query: 478 LIPNDPAHPVSLQAIADDSRFREARLAD------PSVDRLLEISQKLEGLYRHASTHAAG 531
           LIP       SL      +     + A          + L E    +EGL      HA+G
Sbjct: 522 LIPTRKGGIWSLHECFYGNPKEGTKPAKEFCREVEKYEGLKEAMLSIEGLISGRGQHASG 581

Query: 532 IVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           ++I  D  + Q   M     S LP+TQF+ +     G +K D+L +  L  ++ +LD L 
Sbjct: 582 VIIFPDGYIKQNAMM--KTTSGLPITQFDAEDSIYMGGLKLDYLSINALDRIRTALDLLL 639

Query: 591 QRGVKVDL--------------SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
           + G K++                ++  +  + + LL     L  FQ E++  +QAL  + 
Sbjct: 640 EHG-KIEWQGSLRATYNKYFHPDVLEMESPKMFDLLFEGHVLNAFQFETAVGQQALTKIN 698

Query: 637 PDCIEDIIALVSLYR-----PGPIDNIVVY-NNRKNGKEKIVSIH------PLIDPMLKE 684
           P   +++ A  SL R       P+D  V + NN ++  E++ +         +++  L +
Sbjct: 699 PRSFDELCAGNSLMRLSTDGEQPLDKYVRFKNNIQDWYEEMKTAGLNEEEIKILEEHLLD 758

Query: 685 TQGVIIYQEQVMQIA--QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
             G+   QE +M +A  + ++G+SL++A+  R+A+ K  ++ ++ Q+ +F  G  K G  
Sbjct: 759 RYGICDTQEGLMLLAMDERIAGFSLTQANKFRKAVAKANQKLIEDQRIKFYEGGEKTGAR 818

Query: 743 KTIAVNIF--ELLAKFADYGFNKSHAAAYAVI---------SYQTAWMKTHYPVEFLAAS 791
           K     ++  EL  +F  Y F+  H A Y +I          Y   + KT      + A 
Sbjct: 819 KVFLDYVWNKELKPQFG-YSFSLPHIAGYTMILMIEMNICHRYGAIYWKT--ACLSVNAG 875

Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK--VGDNRIYYSLAAIKGVGTTT 849
           M  E +   K     +        I+ P +N    +F     +N+I + L  I G+GT  
Sbjct: 876 MIGETEKGTKYGAIAKAVGDMKGDILNPDINLSNKEFTPLEEENKILFGLKPIAGLGTDA 935

Query: 850 ARHIMEASADKPFDSLEDFCSR-VDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
              I+E    +P+ S  DF  + VD   ++   + SL+ AG  D F  +R  L+
Sbjct: 936 IEKIIE---HRPYKSFGDFFKKIVDPGLISEAKVVSLIKAGCFDSFYPNRRLLM 986


>gi|330880634|gb|EGH14783.1| error-prone DNA polymerase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 305

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 158/305 (51%), Gaps = 14/305 (4%)

Query: 580 TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
           + L+++ D +   RG +  L+ +P DD ETY +++   T+G+FQ+ES      L  ++P+
Sbjct: 1   SALRRTFDLVHLHRGKRWTLADLPGDDRETYEMISRADTIGVFQIESRAQMAMLPRLRPE 60

Query: 639 CIEDIIALVSLYRPGPIDNIVVYNN-RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
              D++  V++ RPGPI   +V+   R+  KE+ ++  P +  + + T GV ++QEQVM+
Sbjct: 61  KFYDLVIEVAIVRPGPIQGDMVHPYLRRRNKEEAITYPPKLKSVFERTLGVPLFQEQVME 120

Query: 698 IAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           +A + +GY+  EAD LRRAM   K    ++  +ER  +G  KNG     A  IFE +  F
Sbjct: 121 VAIIAAGYTPGEADELRRAMAAWKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGF 180

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
             YGF +SHAA++A+++Y + W+K H P  F  A +           +  QDAR+ +I+I
Sbjct: 181 GSYGFPESHAASFALLTYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEI 240

Query: 817 MPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
            P  V     D  +          +  I   L  ++G     AR I  A + + F    D
Sbjct: 241 RPVDVRYSDWDCSLEPLDHPDSTRNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATD 300

Query: 868 --FCS 870
              CS
Sbjct: 301 LTLCS 305


>gi|309807104|ref|ZP_07701083.1| DNA polymerase III subunit alpha domain protein [Lactobacillus
           iners LactinV 03V1-b]
 gi|308166534|gb|EFO68734.1| DNA polymerase III subunit alpha domain protein [Lactobacillus
           iners LactinV 03V1-b]
          Length = 393

 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 90/234 (38%), Positives = 140/234 (59%), Gaps = 3/234 (1%)

Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
           P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   EM K    F++ 
Sbjct: 6   PVLINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSIEMKKIGVDFVNR 65

Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
           A K G S + A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP +F  A +   
Sbjct: 66  AVKQGHSASAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQFYVALLNSN 125

Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIM 854
           + + +K+ K+  D +  NI+I  P +N    +F + D   I   L +I G+       IM
Sbjct: 126 IYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSIIGLRMDFVEQIM 185

Query: 855 EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             +  +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL S  ++
Sbjct: 186 --NLQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLASYKDL 237


>gi|158333930|ref|YP_001515102.1| DNA polymerase III subunit alpha [Acaryochloris marina MBIC11017]
 gi|158304171|gb|ABW25788.1| DNA polymerase III alpha subunit, putative [Acaryochloris marina
            MBIC11017]
          Length = 446

 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 95/285 (33%), Positives = 157/285 (55%), Gaps = 17/285 (5%)

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSH+ AY  ++YQTA++K +YPVE++AA +T    + +K++K+   A    I++ PP 
Sbjct: 38   FNKSHSTAYGYVTYQTAYLKANYPVEYMAALLTANSGDQDKVQKYIATALSMGIEVEPPD 97

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNR 879
            +N   VDF   D  I + L+A++ +G      I+ A   D  F+SL + C RVD + +NR
Sbjct: 98   INRSGVDFTPLDKNILFGLSAVRNLGQGAIEAILAARDEDGGFESLAELCDRVDPRVVNR 157

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R LE+L+++GALD F  +R QL+  L+ I ++AQ   K+R     N+F    G      +
Sbjct: 158  RALEALIYSGALDAFDTNRNQLVHDLELILEWAQSRAKDRAIGQGNLFDIMGGEGDAPTS 217

Query: 940  LEKF----SVEN--SSVRFENEQRVLGFYFSGHPL-DVYKP--ILRKMGIKGYEESVATI 990
            LE       VE+   S + + E+ +LGFY S HPL ++ +P  ++  + +   EE     
Sbjct: 218  LETAPKAEPVEDFQESEKLKLEKEILGFYISNHPLREIERPARLMAPISLANLEE----- 272

Query: 991  RGNNIRLAAMVVSKQQKK--TRKGSRIGWVTFSEPAKEYEANFFP 1033
            +     ++A+V+  + K   T+KG R+  V   + + + E   FP
Sbjct: 273  QPEKTTVSAIVLLTEVKPIITKKGDRMAIVQMEDLSGKAEGVVFP 317


>gi|309805699|ref|ZP_07699739.1| DNA polymerase III subunit alpha domain protein [Lactobacillus
           iners LactinV 09V1-c]
 gi|308164952|gb|EFO67195.1| DNA polymerase III subunit alpha domain protein [Lactobacillus
           iners LactinV 09V1-c]
          Length = 393

 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 89/234 (38%), Positives = 140/234 (59%), Gaps = 3/234 (1%)

Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
           P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   EM K    F++ 
Sbjct: 6   PILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSMEMKKIGVDFVNR 65

Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
           A + G S   A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP +F  A +   
Sbjct: 66  AVQQGHSAAAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQFYVALLNSN 125

Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIM 854
           + + +K+ K+  D +  NI+I  P +N    +F + D   I   L +I G+       IM
Sbjct: 126 IYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSIIGLRMDFVEQIM 185

Query: 855 EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             +  +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL S +++
Sbjct: 186 --NLQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLASYEDL 237


>gi|165928506|ref|ZP_02224338.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165919458|gb|EDR36814.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. F1991016]
          Length = 405

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 157/321 (48%), Gaps = 65/321 (20%)

Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
           G++P   + ++A  +L+RPGPI + ++  Y +   G     S+HP++D +  ET GVI+Y
Sbjct: 3   GIEPMSFKTVVATTALFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDELTAETNGVILY 62

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA--------------- 736
           QEQ M   +LL+G++++EAD +R+A+GKK  E+M    E+F+  A               
Sbjct: 63  QEQTMNATRLLAGFTMAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWIDVEMEDGTTQ 122

Query: 737 -------------------------------------SKNGISKTIAVNIFELLAKFADY 759
                                                S+ G+S+T A  I++   K   Y
Sbjct: 123 RIHRAEHFKCEDGALRTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEIWDAFEKNGAY 182

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            FNKSH  AY++ISYQ+ W+KTHYP EF AA++T+  ++  K +   +DA  + I ++PP
Sbjct: 183 QFNKSHPVAYSLISYQSMWLKTHYPAEFFAAALTILGED--KHQGLVKDALTYGIHVLPP 240

Query: 820 SVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEA--SADKPFDSLEDFCSRV 872
            VN      ++     G   +Y   +A+KG      + IM A       F+SLE F   V
Sbjct: 241 DVNVSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGCQAIMRAREKVGGKFESLEQFEEAV 300

Query: 873 DSK--KLNRRVLESLVFAGAL 891
           + +    N RV ESL   GA 
Sbjct: 301 EKRACACNSRVRESLQKVGAF 321


>gi|32481346|gb|AAP84020.1| catalase [Vibrio cholerae]
          Length = 156

 Score =  159 bits (403), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/130 (59%), Positives = 96/130 (73%), Gaps = 3/130 (2%)

Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
           E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +FI
Sbjct: 24  EDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFI 83

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           QW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC 
Sbjct: 84  QWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCM 143

Query: 425 DRRDEVIRYV 434
           D+RD+VI +V
Sbjct: 144 DKRDQVIDHV 153


>gi|149688728|gb|ABR27775.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
          Length = 316

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 164/334 (49%), Gaps = 39/334 (11%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           P + I+DT+NL  ALEF++     G QPIIG Q+    +D             T   + L
Sbjct: 8   PCLGISDTSNLCGALEFAENISKVGTQPIIGTQIYFKFED-------------TTGLLPL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           +     GY+R+IEL SR YL +       + +  L  I TEG+ +L+G   G   + F  
Sbjct: 55  IALNENGYKRIIELSSRSYLENDALSDPHLDVKELL-IDTEGVSLLSGTIQGLFGKLFEK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----GYDRYRESQVVQLAYTHELPLVATNN 216
                  K   +    F D  Y+ +QRH       ++++   Q +++    ++P++ATN 
Sbjct: 114 GRLDEISKLYRSLSSKFNDNFYLEIQRHGDQNEIAFEKFNLEQSLKI----QIPIIATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
             +L+ + +EAHD L  +   T V++K+R + +  HY K+  EM  +FSDLPEALEN   
Sbjct: 170 VYYLTPDMHEAHDALTCIGSKTYVNEKNRIKYSNQHYFKSNEEMSKLFSDLPEALENNFN 229

Query: 277 IARRCSFILQVHAPILPRFIEKE---CDDIQKEEENELRNKAVAGLE------VRLAQGA 327
           +  +C+F  Q   P+LP    ++    D+I       L+  ++ GL+       ++ +  
Sbjct: 230 LPFKCNFRPQFSKPVLPNISSEKGGSADEI-------LKKDSLDGLKEKFQKVFKIEENN 282

Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
           +        Y+ RLD EL +I  MK+  YFLIV+
Sbjct: 283 LKTDDKFLKYKDRLDHELKIIIEMKYPSYFLIVS 316


>gi|149688712|gb|ABR27767.1| ATP-dependent helicase [Candidatus Pelagibacter ubique HTCC1002]
 gi|149688714|gb|ABR27768.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
 gi|149688716|gb|ABR27769.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
 gi|149688718|gb|ABR27770.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
 gi|149688720|gb|ABR27771.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
 gi|149688724|gb|ABR27773.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
          Length = 316

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 165/329 (50%), Gaps = 29/329 (8%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           P + I+DT+NL  ALEF++     G QPIIG Q+    +D             T   + L
Sbjct: 8   PCLGISDTSNLCGALEFAENISKVGTQPIIGTQIYFRFED-------------TTGLLPL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           +     GY+R+IEL SR YL +       + +  L  I TEG+ +L+G   G   + F  
Sbjct: 55  IALNENGYKRIIELSSRSYLENDALSDPHLDVKDLL-IDTEGVSLLSGTIQGLFGKLFEK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----GYDRYRESQVVQLAYTHELPLVATNN 216
                  K   +    F D  Y+ +QRH       ++++   Q +++    ++P++ATN 
Sbjct: 114 GRLDEISKLYRSLSSKFNDNFYLEIQRHGDQNEIAFEKFNLEQSLKI----QIPIIATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
             +L+ + +EAHD L  +   T V++K+R + +  HY K+  EM  +FSDLPEALEN   
Sbjct: 170 VYYLTPDMHEAHDALTCIGSKTYVNEKNRIKYSNQHYFKSNEEMSKLFSDLPEALENNFN 229

Query: 277 IARRCSFILQVHAPILPRFIEKE---CDDIQKEEE-NELRNKAVAGLEVRLAQGAIAKGY 332
           +  +C+F  Q   P+LP    ++    D+I K++  + L+ K +   +V   +  +    
Sbjct: 230 LPFKCNFRPQFSKPVLPNISSEKGGSADEILKKDSLDGLKEKFLKVFKVE--ENNLKTDD 287

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               Y+ RLD EL +I  MK+  YFLIV+
Sbjct: 288 KFLKYKDRLDHELKIIIEMKYPSYFLIVS 316


>gi|145628378|ref|ZP_01784179.1| DNA polymerase III subunit alpha [Haemophilus influenzae 22.1-21]
 gi|144980153|gb|EDJ89812.1| DNA polymerase III subunit alpha [Haemophilus influenzae 22.1-21]
          Length = 309

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 169/323 (52%), Gaps = 21/323 (6%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1   MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +G++PIIG  + +      K T  G   F     + LL    EGY+ +  L+S+ Y   +
Sbjct: 61  SGMKPIIGADVKV------KSTLCGDEYF----YLTLLAKNNEGYKNITLLLSKAY--QR 108

Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
           G   +  I   WL E   EG+I+L+GG+ G + +     +    E  +  +++ F D  Y
Sbjct: 109 GYNDLPYIDQDWLIE-HREGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFY 167

Query: 184 VNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           + L R    D  R  Q  ++LA +H LPLVATN+ +FL  +D+EAH++ +A+     +  
Sbjct: 168 LALTRTGKPDEERYIQAALKLAKSHGLPLVATNDVMFLKSDDFEAHEIRVAIHDGYTLDD 227

Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             RP+  T   Y ++  EM  +F+D+P ALENT+ IA+RCS  L++    LP+F   +  
Sbjct: 228 PKRPKYYTSQQYFRSEDEMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286

Query: 302 DIQKEEENELRNKAVAGLEVRLA 324
                 E+ L  K+  GLE RLA
Sbjct: 287 ----STEDFLVQKSKEGLEERLA 305


>gi|330882993|gb|EGH17142.1| error-prone DNA polymerase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 325

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/319 (33%), Positives = 161/319 (50%), Gaps = 19/319 (5%)

Query: 271 LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
           L  +V IARRC+F L+      P     E     +   + LR     G   R   G    
Sbjct: 24  LAESVRIARRCTFDLKQLKYEYP----HELVPKGQTPTSWLRELTERGARKRWPNGLTPA 79

Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                  R +++ EL +I   KF  YFL V D +++A+  +I +  GRGS A S   YAL
Sbjct: 80  T------RAQVEKELALITEKKFDSYFLTVHDIVEFARSQHI-LCQGRGSAANSAVCYAL 132

Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
            IT+++P + +LLFERF++ +R   PD D+DF  DRR+EVI+Y+  +YG  R A      
Sbjct: 133 GITELNPEKSNLLFERFISRERNEPPDIDVDFEHDRREEVIQYIFRRYGRGRAALTAVAS 192

Query: 451 SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL-AD-PSV 508
           +     A+RDV + L +P  Q++ L +      A      ++    R RE    AD P +
Sbjct: 193 TYHGSGAMRDVAKVLGLPPDQINALAE------AFSRWSDSLPSPERLREYGFDADTPIL 246

Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
            R+L ++ +L G  RH S H  G VI + PL  LVP+     +D  + Q++   ++  GL
Sbjct: 247 KRVLALTGELIGFPRHLSQHPGGFVISEHPLETLVPVENAAMADRTIIQWDKDDLDLVGL 306

Query: 569 IKFDFLGLKTLTLLQKSLD 587
           +K D L L  L+ L+++ D
Sbjct: 307 LKVDILALGMLSALRRTFD 325


>gi|149688726|gb|ABR27774.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
          Length = 316

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 165/329 (50%), Gaps = 29/329 (8%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           P + I+DT+NL  +LEF++     G QPIIG Q+    +D             T   + L
Sbjct: 8   PCLGISDTSNLCGSLEFAENISKVGTQPIIGTQIYFRFED-------------TTGLLPL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           +     GY+R+IEL SR YL +       + +  L  I TEG+ +L+G   G   + F  
Sbjct: 55  IALNENGYKRIIELSSRSYLENDALSDPHLDVKDLL-IDTEGVSLLSGTIQGLFGKLFEK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----GYDRYRESQVVQLAYTHELPLVATNN 216
                  K   +    F D  Y+ +QRH       ++++   Q +++    ++P++ATN 
Sbjct: 114 GRLDEISKLYRSLSSKFNDNFYLEIQRHGDQNEIAFEKFNLEQSLKI----QIPIIATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
             +L+ + +EAHD L  +   T V++K+R + +  HY K+  EM  +FSDLPEALEN   
Sbjct: 170 VYYLTPDMHEAHDALTCIGSKTYVNEKNRIKYSNQHYFKSNEEMSKLFSDLPEALENNFN 229

Query: 277 IARRCSFILQVHAPILPRFIEKE---CDDIQKEEE-NELRNKAVAGLEVRLAQGAIAKGY 332
           +  +C+F  Q   P+LP    ++    D+I K++  + L+ K +     ++ +  +    
Sbjct: 230 LPFKCNFRPQFSKPVLPNISSEKGGSADEILKKDSLDGLKEKFLKVF--KIEENNLKTND 287

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               Y+ RLD EL +I  MK+  YFLIV+
Sbjct: 288 KFLKYKDRLDHELKIIIEMKYPSYFLIVS 316


>gi|149688722|gb|ABR27772.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
          Length = 316

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 163/331 (49%), Gaps = 33/331 (9%)

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           P + I+DT+NL  ALEF++     G QPIIG Q+    +D             T   + L
Sbjct: 8   PCLGISDTSNLCGALEFAENISKVGTQPIIGTQIYFRFED-------------TTGLLPL 54

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           +     GY+R+IEL SR YL +       + +  L  I TEG+ +L+G   G   + F  
Sbjct: 55  IALNENGYKRIIELSSRSYLENDALSDPHLDVKDLL-IDTEGVSLLSGTIQGLFGKLFEK 113

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----GYDRYRESQVVQLAYTHELPLVATNN 216
                  K   +    F D  Y+ +QRH       ++++   Q +++    ++P++ATN 
Sbjct: 114 GRLDEISKLYRSLSSKFNDNFYLEIQRHGDQNEIAFEKFNLEQSLKI----QIPIIATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
             +L+ + +EAHD L  +   T V++K+R + +  HY K+  EM  +FSDLPEALEN   
Sbjct: 170 VYYLTPDMHEAHDALTCIGSKTYVNEKNRIKYSNQHYFKSNEEMSKLFSDLPEALENNFN 229

Query: 277 IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE------VRLAQGAIAK 330
           +  +C+F  Q   P+LP    ++  +     +  L+  ++ GL+       ++ +  +  
Sbjct: 230 LPFKCNFRPQFSKPVLPNISSEKGGNA----DEMLKKDSLDGLKEKFQKVFKIEENNLKT 285

Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 Y+ RLD EL +I  MK+  YFLIV+
Sbjct: 286 DDKFLKYKDRLDHELKIIIEMKYPSYFLIVS 316


>gi|218670743|ref|ZP_03520414.1| DNA polymerase III, alpha subunit [Rhizobium etli GR56]
          Length = 385

 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 181/364 (49%), Gaps = 16/364 (4%)

Query: 317 AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           AG   R  +G  AK         ++++EL++I +  ++ YFL V   IQ A+ +   +  
Sbjct: 18  AGAAKRYPEGIPAK------VAPQIEYELDLIGKKNYASYFLTVHRIIQHARYDLKVLCQ 71

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGS A SV  Y L IT++DP + +LLF+RF++ DR   PD D+DF  DRR+EVI+++  
Sbjct: 72  GRGSAANSVICYCLEITEVDPQKSTLLFDRFISMDRDEPPDIDVDFEHDRREEVIQFIYK 131

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            Y  E         + + ++A R+V +A  +       +  L+       +S +    D+
Sbjct: 132 NYKREHAGLTAGVTTYRTRSAGREVAKAFGLSEDVQSAISSLVWGWSEDNLSER----DA 187

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +     + DP    +L+ + +L G  RH + H  G VI    L ++VP+ +    D  + 
Sbjct: 188 KAAGLDVKDPVTRNVLKYASELLGFPRHLTQHVGGFVITRDRLDEVVPIMKTAMPDRYMI 247

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH-----ETYH 610
           +++   ++   ++K D L L  LT L+K+   L     VK  L+ +   +H       Y 
Sbjct: 248 EWDKDDLDNVKILKVDVLALGMLTCLRKAFSLLELHYDVKKTLADLGNREHGDEGKPVYE 307

Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
           ++    TLG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+   K  +++
Sbjct: 308 MMGRADTLGVFQIESRAQMSMLPRLKPKIFYDLVIEVAIVRPGPIQGDMVHPYLKRREQR 367

Query: 671 IVSI 674
             +I
Sbjct: 368 ARNI 371


>gi|172039636|ref|YP_001806137.1| DNA polymerase III subunit alpha [Cyanothece sp. ATCC 51142]
 gi|171701090|gb|ACB54071.1| DNA polymerase III alpha subunit, C-terminal intein/extein
            [Cyanothece sp. ATCC 51142]
          Length = 452

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/293 (31%), Positives = 158/293 (53%), Gaps = 18/293 (6%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   DN +K++K+ ++ ++  I 
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDNQDKVEKYRENCQKMGID 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA--SADKPFDSLEDFCSRVD 873
            ++PP +N    DF     +I +  +A++ +G     +I++A   A+  F+SL DFC RVD
Sbjct: 93   VLPPDINRSQKDFTPVGKQILFGFSAVRNLGEGAIDNILKAREEAEGQFESLADFCCRVD 152

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             + +N+R LE+L++AGA D    +R QL+  L+ +  +AQ   K + +   NIF    G 
Sbjct: 153  LRSVNKRALETLIYAGAFDAIYPNRKQLINDLELVVPWAQKRTKEKESGQLNIFDLMSGN 212

Query: 934  FSD--------KITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYK---PILRKMGI 980
             ++        K      SVE+ S+  + + E+  LGFY S HPL   K    IL  + +
Sbjct: 213  TTESTEANTDFKQAPSASSVEDYSLQDKLKLEKEHLGFYVSEHPLTAVKKAAKILSPINL 272

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                E  A  +   +    MV   +Q  T+KG ++ ++   + + + +A  FP
Sbjct: 273  NEMGEQKAKTK---VSAVIMVNEVKQYTTKKGDQMAFLVLEDGSAQVDAVCFP 322


>gi|126659690|ref|ZP_01730819.1| DNA polymerase III subunit alpha [Cyanothece sp. CCY0110]
 gi|126619035|gb|EAZ89775.1| DNA polymerase III subunit alpha [Cyanothece sp. CCY0110]
          Length = 452

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/295 (32%), Positives = 160/295 (54%), Gaps = 22/295 (7%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   DN +K++K+ ++ ++  I 
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDNQDKVEKYRENCQKMGID 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA--SADKPFDSLEDFCSRVD 873
            ++PP +N    DF     +I +  +A++ +G     +I++A   A+  F+SL DFC RVD
Sbjct: 93   VLPPDINRSQKDFTPVGKQILFGFSAVRNLGEGAIDNILKAREEAEGAFESLADFCCRVD 152

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             + +N+R LE+LV+AGA D    +R QL+  L+ +  +AQ   K + +   NIF    G 
Sbjct: 153  LRSVNKRALETLVYAGAFDAINPNRKQLINDLELVVPWAQKRTKEKESGQLNIFDLMSGN 212

Query: 934  FSDKITLEKFS----------VENSSV--RFENEQRVLGFYFSGHPLDVYK---PILRKM 978
             ++  T E  S          VE+ S+  + + E+  LGFY S HPL   K    IL  +
Sbjct: 213  NTE--TTESNSDFKHAPSASPVEDYSLQDKLKLEKEHLGFYVSEHPLTAVKKAAKILSPI 270

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +    E  A  + + + +A  V   +Q  T+KG ++ ++   + + + E   FP
Sbjct: 271  NLNEIAEQKAKTKVSAVIMANEV---KQYTTKKGDQMAFLVLEDGSAQVEGVCFP 322


>gi|75909952|ref|YP_324248.1| DNA polymerase III subunit alpha [Anabaena variabilis ATCC 29413]
 gi|75703677|gb|ABA23353.1| intein / DNA polymerase III, alpha subunit [Anabaena variabilis ATCC
            29413]
          Length = 450

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 151/305 (49%), Gaps = 26/305 (8%)

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
            N F      A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T   ++ +K++K+  
Sbjct: 25   NFFVKNGLIASNCFNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTANSNDTDKVQKYIS 84

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLE 866
                 NIQI PP +N   VDF     +I +  +A++ VG      ++EA      F SL 
Sbjct: 85   TCLSMNIQIEPPDINRSGVDFTPVAGKILFGFSAVRNVGQNAIASVLEARETTGEFKSLA 144

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DFC RVD + +NRR LESL++ GA D    +R QL+Q L+ +  +AQ   ++R +   N+
Sbjct: 145  DFCDRVDLRAVNRRTLESLIYCGAFDKIEANRHQLIQDLELVYDWAQSRARDRASGQGNL 204

Query: 927  FAHEKGTFSDKITLEKFSVENS-------------SVRFENEQRVLGFYFSGHPLDVYK- 972
            F    G  S        + E +              +R E E  +LGFY S HPL   + 
Sbjct: 205  FDLLGGYSSTSTKTANNAFETAPKAKPVLDYPPQEKLRLEKE--LLGFYVSDHPLKSLRS 262

Query: 973  --PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK--TRKGSRIGWVTFSEPAKEYE 1028
              P+L  + +    E     +  + RL  +V+    KK  T+KG  +  +   +   + E
Sbjct: 263  VAPLLTPINLSQLGE-----QREDTRLCVIVMLNGVKKVMTKKGDAMAILQLEDLTSQSE 317

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 318  AVVFP 322


>gi|37695666|gb|AAR00364.1| DnaE [Vibrio parahaemolyticus]
 gi|37695674|gb|AAR00368.1| DnaE [Vibrio parahaemolyticus]
 gi|37695676|gb|AAR00369.1| DnaE [Vibrio parahaemolyticus]
 gi|37695678|gb|AAR00370.1| DnaE [Vibrio parahaemolyticus]
 gi|37695680|gb|AAR00371.1| DnaE [Vibrio parahaemolyticus]
 gi|37695682|gb|AAR00372.1| DnaE [Vibrio parahaemolyticus]
 gi|37695684|gb|AAR00373.1| DnaE [Vibrio parahaemolyticus]
 gi|145952266|gb|ABP98956.1| DnaE [Vibrio parahaemolyticus]
          Length = 149

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/129 (59%), Positives = 93/129 (72%), Gaps = 3/129 (2%)

Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
           EE   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +
Sbjct: 19  EETEFLVMKSREGLEERLEFLFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVME 78

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 79  FIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 138

Query: 423 CQDRRDEVI 431
           C D+RD+VI
Sbjct: 139 CMDKRDQVI 147


>gi|67920557|ref|ZP_00514077.1| Protein splicing (intein) site [Crocosphaera watsonii WH 8501]
 gi|67858041|gb|EAM53280.1| Protein splicing (intein) site [Crocosphaera watsonii WH 8501]
          Length = 450

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 154/293 (52%), Gaps = 18/293 (6%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   D+ +K++K+ ++ ++  I 
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDSQDKVEKYRENCQKMGID 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP--FDSLEDFCSRVD 873
            ++PP +N    DF   D +I + L+A++ +G     +I++A  ++   F SL DFC RVD
Sbjct: 93   VLPPDINLSKKDFTPIDKQILFGLSAVRNLGEGAIENILKAREEEEGGFKSLADFCCRVD 152

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------ 927
             + +N+R LE+L++AGA D    +R QL+  L+ +  +AQ   K + +   N+F      
Sbjct: 153  LRSVNKRALETLIYAGAFDALNANRQQLINDLELVIPWAQKRTKEKESGQLNLFDLVSDN 212

Query: 928  ----AHEKGTFSDKIT---LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                   K  F    +   +E +S+++  +R E E   LGFY S HPL   K   + +  
Sbjct: 213  NGETTESKNDFQQAPSTSPVEAYSLQD-KLRLEKEH--LGFYVSEHPLTALKKAAKLLSP 269

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                E     +   +    MV   +Q  T+KG  + ++   + + + +   FP
Sbjct: 270  INLNEIAEQKKNTKVSAVIMVNEVKQYTTKKGDPMAFLVLEDGSAQVKGVCFP 322


>gi|37695662|gb|AAR00362.1| DnaE [Vibrio parahaemolyticus]
 gi|37695670|gb|AAR00366.1| DnaE [Vibrio parahaemolyticus]
 gi|37695686|gb|AAR00374.1| DnaE [Vibrio parahaemolyticus]
 gi|145952254|gb|ABP98950.1| DnaE [Vibrio parahaemolyticus]
 gi|145952256|gb|ABP98951.1| DnaE [Vibrio parahaemolyticus]
 gi|145952258|gb|ABP98952.1| DnaE [Vibrio parahaemolyticus]
 gi|145952260|gb|ABP98953.1| DnaE [Vibrio parahaemolyticus]
 gi|145952262|gb|ABP98954.1| DnaE [Vibrio parahaemolyticus]
 gi|145952264|gb|ABP98955.1| DnaE [Vibrio parahaemolyticus]
 gi|145952268|gb|ABP98957.1| DnaE [Vibrio parahaemolyticus]
          Length = 149

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/129 (59%), Positives = 93/129 (72%), Gaps = 3/129 (2%)

Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
           EE   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +
Sbjct: 19  EETEFLVMKSREGLEERLEFLFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVME 78

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 79  FIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 138

Query: 423 CQDRRDEVI 431
           C D+RD+VI
Sbjct: 139 CMDKRDQVI 147


>gi|23006744|ref|ZP_00048923.1| COG0587: DNA polymerase III, alpha subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 227

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 97/215 (45%), Positives = 125/215 (58%), Gaps = 6/215 (2%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           K   FVHL VHSSYSLLEG +   +++   AAD+QPA+A+TDTNNLF ALEFS+ A  AG
Sbjct: 6   KEVGFVHLHVHSSYSLLEGGVKAGDLVKAAAADRQPALALTDTNNLFGALEFSEYAAKAG 65

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           IQPI G QL I  +    M    + P     +IVLL     GY  L+ L SR Y      
Sbjct: 66  IQPIAGIQLTICFEAPDPM---ARLPQAGCGNIVLLAQDETGYGNLLRLGSRAYFDGALG 122

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
           +  R+ +S L E   +G+I LTGG +GP+D +        A KRL   K  FG +RLYV 
Sbjct: 123 EPPRVAVSAL-EGAVDGVIALTGGLTGPLDTSLRAGRHDQAAKRLEFLKSAFGEERLYVE 181

Query: 186 LQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLF 219
           +QRH   D R  E ++++LA +H L +VATN   F
Sbjct: 182 IQRHGLADERAVERELLRLADSHGLGIVATNEPYF 216


>gi|330992109|ref|ZP_08316058.1| Error-prone DNA polymerase 2 [Gluconacetobacter sp. SXCC-1]
 gi|329761130|gb|EGG77625.1| Error-prone DNA polymerase 2 [Gluconacetobacter sp. SXCC-1]
          Length = 374

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 170/349 (48%), Gaps = 21/349 (6%)

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +FS  PEA+  T++I  RC F L   A   P       D++    +     +A+  L
Sbjct: 1   MARLFSRYPEAVARTMDIVGRCRFSLDDLAYRYP-------DEVSVPGQTP--QQALEAL 51

Query: 320 EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
               A+     G    D  + L  EL +I RM ++ YFL V   +++A+  +I +  GRG
Sbjct: 52  TWEGARSVYPDGV-PDDVAETLRHELGLIGRMNYAPYFLTVNSIVRYARSQDI-LCQGRG 109

Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
           S A S   Y L IT IDP R SLLFERF++ +R   PD D+DF   RR++VI++V   YG
Sbjct: 110 SAANSAVCYVLGITAIDPARNSLLFERFVSEERGEPPDIDVDFEHARREQVIQWVYEHYG 169

Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
            +R A        +AK ALRDVG+ + +P         LI +   H        DD    
Sbjct: 170 RDRAALTAVVIRYRAKGALRDVGKVMGLPED-------LIRSLSGHIWGWGRKLDDEALN 222

Query: 500 EA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
           +    L+D  +   L++++ L G+ RH S H  G V+    L +LVP+         + +
Sbjct: 223 DTGIDLSDRRIRLTLDLARCLIGMPRHLSQHPGGFVLTHDRLDELVPIEPASMEQRQIIE 282

Query: 558 FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
           ++   I+    +K D L L  LT ++K LD LA+ +G    L  +P ++
Sbjct: 283 WDKDDIDVLKFMKVDILALGMLTCMKKGLDLLAEHKGQHFTLQTLPAEE 331


>gi|37695672|gb|AAR00367.1| DnaE [Vibrio parahaemolyticus]
          Length = 149

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 77/129 (59%), Positives = 93/129 (72%), Gaps = 3/129 (2%)

Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
           EE   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +
Sbjct: 19  EETEFLVMKSREGLEERLEFLFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVME 78

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 79  FIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 138

Query: 423 CQDRRDEVI 431
           C D+RD+VI
Sbjct: 139 CMDKRDQVI 147


>gi|17228549|ref|NP_485097.1| DNA polymerase III subunit alpha [Nostoc sp. PCC 7120]
 gi|17130400|dbj|BAB73011.1| DNA polymerase III alpha subunit [Nostoc sp. PCC 7120]
          Length = 450

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 151/305 (49%), Gaps = 26/305 (8%)

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
            N F      A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T   ++ +K++K+  
Sbjct: 25   NFFIKNGLIASNCFNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTANSNDTDKVQKYIS 84

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLE 866
                 NIQI PP +N   VDF     +I +  +A++ VG      ++EA      F SL 
Sbjct: 85   TCLSMNIQIEPPDINRSGVDFTPVAGKILFGFSAVRNVGQNAIASVLEARDTTGEFKSLA 144

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DFC R+D + +NRR LESL++ GA D    +R QL+Q L+ +  +AQ   ++R +   N+
Sbjct: 145  DFCDRIDLRAVNRRTLESLIYCGAFDKIEANRHQLIQDLELVYDWAQSRARDRASGQGNL 204

Query: 927  FAHEKGTFSDKITLEKFSVENS-------------SVRFENEQRVLGFYFSGHPLDVYK- 972
            F    G  S        + E +              +R E E  +LGFY S HPL   + 
Sbjct: 205  FDLLGGYSSTNTKTANNAFETAPKAKPVLDYPPQEKLRLEKE--LLGFYVSDHPLKSLRS 262

Query: 973  --PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK--TRKGSRIGWVTFSEPAKEYE 1028
              P+L  + +    E     +  + RL  +V+    KK  T+KG  +  +   +   + E
Sbjct: 263  VAPLLTPINLSQLGE-----QREDTRLCVIVMLNGVKKVMTKKGDAMAILQLEDLTSQSE 317

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 318  AVVFP 322


>gi|37695668|gb|AAR00365.1| DnaE [Vibrio parahaemolyticus]
          Length = 149

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 77/129 (59%), Positives = 92/129 (71%), Gaps = 3/129 (2%)

Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
           EE   L  K+  GLE RL         +     +Y +RL  EL VI +M F GYFLIV +
Sbjct: 19  EETEFLVMKSREGLEERLEFLFPNEEERKKRRPEYDERLQIELYVINQMGFPGYFLIVME 78

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 79  FIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 138

Query: 423 CQDRRDEVI 431
           C D+RD+VI
Sbjct: 139 CMDKRDQVI 147


>gi|37695660|gb|AAR00361.1| DnaE [Vibrio parahaemolyticus]
          Length = 149

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/121 (61%), Positives = 90/121 (74%), Gaps = 3/121 (2%)

Query: 314 KAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N
Sbjct: 27  KSREGLEERLEFLFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDN 86

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+V
Sbjct: 87  AIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQV 146

Query: 431 I 431
           I
Sbjct: 147 I 147


>gi|37695664|gb|AAR00363.1| DnaE [Vibrio parahaemolyticus]
          Length = 149

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 77/129 (59%), Positives = 92/129 (71%), Gaps = 3/129 (2%)

Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
           EE   L  K+  GLE RL         +     +Y +RL  EL VI +M F GYFLIV +
Sbjct: 19  EETEFLVMKSREGLEERLEFLFPDEEERKKRRPEYDERLQIELYVINQMGFPGYFLIVME 78

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 79  FIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 138

Query: 423 CQDRRDEVI 431
           C D+RD+VI
Sbjct: 139 CMDKRDQVI 147


>gi|218441796|ref|YP_002380125.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 7424]
 gi|218174524|gb|ACK73257.1| DNA-directed DNA polymerase [Cyanothece sp. PCC 7424]
          Length = 449

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 98/293 (33%), Positives = 158/293 (53%), Gaps = 18/293 (6%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   D+ EKI+K+ ++ ++ NI 
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDSQEKIEKYRENCQKLNID 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA--SADKPFDSLEDFCSRVD 873
            + PP +N    DF     +I + L+A++ +G     +I++A   A   F+SL DFCSRVD
Sbjct: 93   VEPPDINRSQKDFTPIKEKILFGLSAVRNLGENAIENILKARQEAGGKFESLADFCSRVD 152

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             + +NRR LE+L++ GA D    +R QL++ LD +  +AQ   K + +   NIF      
Sbjct: 153  LRIVNRRALETLIYCGAFDQINDNRHQLIEYLDIVIPWAQKRNKEKESGQLNIFDALLEN 212

Query: 934  FSDKITLEKF--------SVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
              +K   E          SV + S+  + + E+  LGFY S HPL+    IL+K  +   
Sbjct: 213  IENKNDNEVVFDQAPNLPSVADYSLDEKLKLEKEHLGFYVSEHPLN---HILKKAHVLSP 269

Query: 984  EESVATIRGNNIRLAAMVV---SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                     N+ +L ++VV   S ++  TR+G  + +V   +   + E   FP
Sbjct: 270  VNLNELETQNSRKLISVVVMINSVKKITTREGKPMAFVGLEDTTAQVEGILFP 322


>gi|169836105|ref|ZP_02869293.1| DNA polymerase III, alpha subunit [candidate division TM7
           single-cell isolate TM7a]
          Length = 107

 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 69/101 (68%), Positives = 82/101 (81%)

Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
           GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLNPDR+SMPD DID    RR+EVI Y 
Sbjct: 7   GPGRGSAAGSIIAYALNITDLDPLKYDLLFERFLNPDRVSMPDIDIDIQDTRRNEVIEYC 66

Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            NKYGHERVA I TFG++ A+A++RDV R LQ+PY + DRL
Sbjct: 67  ANKYGHERVANICTFGTMAARASVRDVARVLQVPYGESDRL 107


>gi|218680670|ref|ZP_03528567.1| DNA polymerase III, alpha subunit [Rhizobium etli CIAT 894]
          Length = 521

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 145/545 (26%), Positives = 240/545 (44%), Gaps = 48/545 (8%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           ++  P+F  +   +++S LEGA S   ++ + A  +   + I D N++   +    +A A
Sbjct: 2   MKSEPAFFEIGARTNFSFLEGASSPEEMVVQAAHLRLGGLGIADRNSVAGVV----RAHA 57

Query: 65  AGIQ--------PIIGCQLDIDMQ-----DNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQ 110
             +Q          I  Q + + +     D +++    +  F    P I+       G+ 
Sbjct: 58  QALQLEERYRNRDAIMAQAEREGKKEKIVDPIRIQPGARLVFSDDTPDILAYPRNRRGWA 117

Query: 111 RLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS--QVA 167
            L  L+S   L ++  K    +  + L E G E ++ L        DR    + +     
Sbjct: 118 NLCRLLSAGNLKEEAVKGDCILTEAELMEWGDEMMLALVP------DRTLVESKAGQSAL 171

Query: 168 EKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
           E  L  F++ FG   Y+ L   + G DR   + +  LA  + LPL+ATN  L+   E   
Sbjct: 172 ENYLERFRRRFGKAFYMALAPAYDGRDRQVFAVLAMLAARNRLPLIATNQPLYHHPERRP 231

Query: 227 AHDVLMAVAHSTVVSQKD---RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
             DV++A+     ++Q      P    + YLK+  EM  IF D P A+ENT     + SF
Sbjct: 232 LSDVVIAIREHVEIAQAGFLLAPNA--ERYLKDSREMARIFRDYPAAIENTRAFFGKLSF 289

Query: 284 ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            L       P     E D  +  +E  L      G   R  QG   K        +++D+
Sbjct: 290 SLTELEHNYP----PENDPGETPQET-LERLTRTGAAKRYPQGIPDK------VAKQIDY 338

Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
           EL +I   K++ YFL V   I+ A+     +  GRGS A SV  Y L IT++DP + +LL
Sbjct: 339 ELKLIGEKKYASYFLTVHRIIRHARYELKVLCQGRGSAANSVICYCLEITEVDPQKSTLL 398

Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           F+RF++ DR   PD D+DF  DRR+EVI+Y+   Y  E         + + ++A R+V +
Sbjct: 399 FDRFISMDRDEPPDIDVDFEHDRREEVIQYIYKTYTREHAGLTAGVTTYRTRSAGREVAK 458

Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
           A  +       +  L+       +S +    D++     + DP    +L+ + +L G  R
Sbjct: 459 AFGLSEDVQSAISSLVWGWSEDNLSER----DAKAAGLDIKDPVTRNVLKYASELLGFPR 514

Query: 524 HASTH 528
           H + H
Sbjct: 515 HLTQH 519


>gi|221316507|ref|ZP_03598312.1| hypothetical protein BsubsN3_22609 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
          Length = 731

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 161/639 (25%), Positives = 284/639 (44%), Gaps = 72/639 (11%)

Query: 323 LAQGAIAKGYHAQDYRQ----RLDFELNVIARMK------FSGYFLIVADFIQWAKKNNI 372
           +A+G +AK    QD  +    R++ EL+ +  +        S YF++  D +    + ++
Sbjct: 17  IAEGMVAK---KQDLNKENLSRINTELDELYHITENLGQPLSSYFVLSKDVVDLMWQVSL 73

Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
            VG  RGS       Y L I  ++P++F+L   RFL+ +R  +PD D+D    +R E+I+
Sbjct: 74  -VGVSRGSACCFYLNYLLDIVQLNPIKFNLPHWRFLSKERPELPDIDLDSEGSKRHEIIQ 132

Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
             ++ YG E V  + TF +   ++ +    R L +       +  LIP       SL   
Sbjct: 133 ITKDHYGEENVLNMGTFTTEGTRSTVLTSCRGLGIDKDIAHNIANLIPTRKGGIWSLHEC 192

Query: 493 ---ADDSRFREARLADPSVDR---LLEISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPM 545
                    + A+     VD+   L E    +EGL      HA+G++I  D  + Q   M
Sbjct: 193 FYGNPKEGTKPAKEFCREVDKYEGLKEAMLSIEGLISGRGQHASGVIIFPDGYIKQNAMM 252

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL------- 598
                S LP+TQF+ +     G +K D+L +  L  ++ +LD L + G K++        
Sbjct: 253 --KTTSGLPITQFDAEDSIYMGGLKLDYLSINALDRIRTALDLLLEHG-KIEWQGSLRAT 309

Query: 599 -------SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                   ++  +  + + LL     L  FQ E++  +QAL  + P   +++ A  SL R
Sbjct: 310 YNKYFHPDVLEMESPKMFDLLFKGHVLNAFQFETAVGQQALTKINPRSFDELCAGNSLMR 369

Query: 652 PG-----PIDNIVVY-NNRKNGKEKIVSIH------PLIDPMLKETQGVIIYQEQVMQIA 699
                  P+D  V + NN ++  E++ +         +++  L +  G+   QE +M +A
Sbjct: 370 LSTDGEQPLDKYVRFKNNIQDWYEEMKTAGLNEEEIKILEEHLLDRYGICDTQEGLMLLA 429

Query: 700 --QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF--ELLAK 755
             + ++G+SL++A+  R+A+ K  ++ ++ Q+ +F  G  K G  K     ++  EL  +
Sbjct: 430 MDERIAGFSLTQANKFRKAVAKANQKLIEDQRIKFYEGGEKTGARKVFLDYVWNKELKPQ 489

Query: 756 FADYGFNKSHAAAYAVI---------SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
           F  Y F+  H A Y +I          Y   + KT      + A M  E +   K     
Sbjct: 490 FG-YSFSLPHIAGYTMILMIEMNICHRYGAIYWKT--ACLSVNAGMIGETEKGTKYGAIA 546

Query: 807 QDARQFNIQIMPPSVNTPCVDFKV--GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
           +        I+ P +N    +F     +N+I + L  I G+GT     I+E    +P+ S
Sbjct: 547 KAVGDMKGDILNPDINLSNKEFTPLEEENKILFGLKPIAGLGTDAIEKIIE---HRPYKS 603

Query: 865 LEDFCSR-VDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             DF  + VD   ++   + SL+ AG  D F  +R  L+
Sbjct: 604 FGDFFKKIVDPGLISEAKVVSLIKAGCFDSFYPNRRLLM 642


>gi|270710974|ref|ZP_06223163.1| DNA polymerase III, alpha subunit [Haemophilus influenzae HK1212]
 gi|270315668|gb|EFA27841.1| DNA polymerase III, alpha subunit [Haemophilus influenzae HK1212]
          Length = 144

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 96/139 (69%)

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
           AQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA 
Sbjct: 1   AQVLAGYTLGGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAG 60

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           YGFNKSH+AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ P
Sbjct: 61  YGFNKSHSAAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTP 120

Query: 819 PSVNTPCVDFKVGDNRIYY 837
           P +N     F V +    Y
Sbjct: 121 PDINIGKHHFSVNEQGXIY 139


>gi|298492691|ref|YP_003722868.1| nucleic acid-binding OB-fold tRNA/helicase-type protein ['Nostoc
            azollae' 0708]
 gi|298234609|gb|ADI65745.1| nucleic acid binding OB-fold tRNA/helicase-type ['Nostoc azollae'
            0708]
          Length = 451

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 153/302 (50%), Gaps = 34/302 (11%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T    + +K++K+  +     I+
Sbjct: 33   IASNCFNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTSNSGDTDKVQKYLNNCTSMGIE 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            I PP +N   +DF   + +I +  +A++ VG      I+EA A+   F SL DFC R+D 
Sbjct: 93   IDPPDINRSGLDFTPAEKKILFGFSAVRNVGQNAIACILEARAEGGEFKSLGDFCDRIDL 152

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            + +NRR LESL+  GA D    +R QL++ L+ +  +AQ   K R +   N+F    G+F
Sbjct: 153  RAVNRRTLESLIQCGAFDKIESNRQQLIRDLELVYDWAQSRAKERASGQGNLFDLMGGSF 212

Query: 935  SDKITLEKFSVENSSV-------------RFENEQRVLGFYFSGHPLDVYK-------PI 974
            ++   L+K +    S              +   E+ +LGFY S HPL   K       PI
Sbjct: 213  ANNSNLQKSNNAFESAPKAEVTLDFPPQEKLRLEKELLGFYVSAHPLKDIKQSSSLLAPI 272

Query: 975  -LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK--TRKGSRIGWVTFSEPAKEYEANF 1031
             L ++G +           +N  L A+V+    KK  T+KG  +  +   +     EA  
Sbjct: 273  NLSQLGDQ----------KDNTMLCAVVMLNNVKKVVTKKGDPMAILQIEDLTASSEAIV 322

Query: 1032 FP 1033
            FP
Sbjct: 323  FP 324


>gi|170078979|ref|YP_001735617.1| DNA polymerase III subunit alpha [Synechococcus sp. PCC 7002]
 gi|169886648|gb|ACB00362.1| DNA polymerase III alpha subunit [Synechococcus sp. PCC 7002]
          Length = 446

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 148/283 (52%), Gaps = 16/283 (5%)

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSH+ AYA ++YQTA++K +YPVE++ A ++    N +K++K+ ++A +  I ++PP 
Sbjct: 38   FNKSHSTAYAYVTYQTAYLKANYPVEYMTALLSASSGNKDKVRKYRENAERMGILVLPPD 97

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
            +N   +DFK     I + L+A++ +G      I+ A    PF SL D CSR+D + +NRR
Sbjct: 98   INESDLDFKPVGQGIRFGLSAVQNLGENAINAILAAREAGPFLSLSDLCSRLDLRVVNRR 157

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---AHEKGTFSDK 937
             LE+L+  G LD    +R  +L+ LD +  +AQ   K + +   N+F         F + 
Sbjct: 158  ALETLITCGGLDSLHDNRQAMLKGLDLMMDWAQLKAKEKASGQTNLFESLGDTAAAFDEA 217

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK----PILRKMGIKGYEESVATIRGN 993
              L K +      +   E+ +LGFY S HPL+  +    PIL  + +      +      
Sbjct: 218  PVLPKVADLTLEEKLRQEKELLGFYVSEHPLEKLRSTISPILSPISLTAIANHI------ 271

Query: 994  NIRLAAMVVSKQQKK--TRKGSR-IGWVTFSEPAKEYEANFFP 1033
            N +++A+ +    +K  T+  +  + ++   + + + E   FP
Sbjct: 272  NKKVSAVAILTDMRKIFTKANNEPMAFIQLEDISGQVEGIVFP 314


>gi|157273447|gb|ABV27346.1| DNA polymerase III alpha subunit [Candidatus Chloracidobacterium
            thermophilum]
          Length = 445

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/274 (32%), Positives = 134/274 (48%), Gaps = 4/274 (1%)

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+  Y +++Y+TA++K HYP  F AA +T E+ + +K+ ++ + AR   ++I+PP VN 
Sbjct: 47   SHSVCYGILAYRTAYLKAHYPSHFWAAVLTSELSDSDKVARYIECARAQGVEILPPDVNV 106

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVL 882
                F     RI + L AIKG+G  T   I+EA     PF SL D   R+D K LNRRVL
Sbjct: 107  SHHGFTATGGRIRFGLMAIKGIGEATVDAILEARQKGGPFRSLFDLTKRLDPKALNRRVL 166

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKITLE 941
            ESLV +GALD    SR Q   +++   +Y     ++      ++F     T  + +  L 
Sbjct: 167  ESLVKSGALDSLPGSRAQKFAAIEAALEYGLQAHRDAATGQASLFDTTSSTDPAPESQLP 226

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIRGNNIRLAA 999
            +            E+  LGFY SGHPL  ++  L       Y E    A   G  +R+  
Sbjct: 227  QVPEWTEQESLAGEKASLGFYLSGHPLATFRETLAAFKSLSYAELAEQAPGPGQVVRMGG 286

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +V +   K T+KG R    T  +     E   +P
Sbjct: 287  IVSNFVVKNTKKGDRFAVFTLEDETGSIEVIAWP 320


>gi|166366494|ref|YP_001658767.1| DNA polymerase III subunit alpha [Microcystis aeruginosa NIES-843]
 gi|166088867|dbj|BAG03575.1| DNA polymerase III alpha subunit [Microcystis aeruginosa NIES-843]
          Length = 445

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 158/295 (53%), Gaps = 26/295 (8%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   DN +K++K+ ++ ++ NI 
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDNQDKVEKYRENCQKMNID 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA--SADKPFDSLEDFCSRVD 873
            + PP +N     F     +I + L+A++ +G      I++A  +    F SL DFC RVD
Sbjct: 93   VEPPDINRSQKHFTPIGRKILFGLSAVRNLGENAIEAILKAREATGGKFTSLGDFCERVD 152

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             + +N+R LE+L++ GA D    +R QL++ L+ +  +AQ   K + +   NIF    G+
Sbjct: 153  LRVINKRALETLIYCGAFDKIQPNRHQLIEDLELVVAWAQKRTKEKESGQMNIFDMLGGS 212

Query: 934  FSDK-----------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK---PILRKMG 979
              +K             +E FS++   ++ E E   LGFY S HPL   +    +L  + 
Sbjct: 213  TENKQESEFEQSPSATAVEDFSLQ-EKLKLEKEH--LGFYVSEHPLKALQRAAQVLSPIN 269

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKK--TRKGSRIGWVTFSEPAKEYEANFF 1032
            +   EE          +++A+V+    KK  T+KG+ + ++T  + + + EA  F
Sbjct: 270  LADLEE-----HKTRKKVSAIVLLNAVKKIMTKKGTPMAFLTLEDASGQSEAVIF 319


>gi|218682009|ref|ZP_03529610.1| DNA polymerase III, alpha subunit [Rhizobium etli CIAT 894]
          Length = 564

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 203/435 (46%), Gaps = 43/435 (9%)

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRK 665
             Y ++    TLG+FQ+ES      L  ++P    D++  V++ RPGPI   +V  Y  R+
Sbjct: 14   VYAMMGRADTLGVFQIESRAQMSMLPRLKPTVFYDLVIEVAIVRPGPIQGDMVHPYLKRR 73

Query: 666  NGKEKIVSI-HPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
              + + + I +P   ++ +L+ T GV ++QEQ MQIA   +G+  +EAD LRRAM   K 
Sbjct: 74   EQRARNIPIEYPSKELEAVLERTLGVPLFQEQAMQIAITAAGFKPAEADKLRRAMATFKR 133

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               +   ++RFI G +  G ++  A   F  +  F +YGF +SHAA++A++ Y ++W+K 
Sbjct: 134  TGTIGNFEKRFIEGMASKGYTEEFARQCFNQIKGFGEYGFPESHAASFALLVYASSWLKA 193

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN--------------TPCVD 827
            +YP  F AA +  +        +  +DAR+  ++I+P  +N              +  VD
Sbjct: 194  YYPDVFCAAMLNSQPMGFYAPAQLVRDAREHGVKILPVDINESDWDCDLEAAAFDSDAVD 253

Query: 828  FKVGDNR--------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            F+  + R        +      IKGV +     ++  +  K + S+ D   R     L +
Sbjct: 254  FRHREMREIIKARHAVRLGFRQIKGV-SDKEMELLVKNRGKGYGSVRDLWLR---SGLQK 309

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLD--NIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             V+E L  A A    G SR   L ++   +++  A+ +      +H ++ A       + 
Sbjct: 310  SVIERLADADAFQSLGLSRRDALWAVRALDVKSAAEELPLFEQARHVDLQAEPATKLPEM 369

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
            +  E+            + R L      HP+   +  L++MGI    + +    G  + +
Sbjct: 370  LPGEQVI---------EDYRYLSLSLKAHPVSFLREELQRMGITRNVDLLKVANGKRVTI 420

Query: 998  AAMVVSKQQKKTRKG 1012
            A +V+ +Q+  + KG
Sbjct: 421  AGLVLVRQRPGSAKG 435


>gi|228471411|ref|ZP_04056206.1| DNA polymerase III, alpha subunit family [Porphyromonas uenonis
           60-3]
 gi|228306785|gb|EEK15911.1| DNA polymerase III, alpha subunit family [Porphyromonas uenonis
           60-3]
          Length = 429

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 90/275 (32%), Positives = 138/275 (50%), Gaps = 5/275 (1%)

Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
           Y    TH   I I  + +  +V + +    + P    +M   E AGLI F  L  + L++
Sbjct: 147 YGREETHP--IFICSQNIVDIVSVEKKGVRNRPTIAVSMLDAEDAGLIPFHLLRTEALSV 204

Query: 582 LQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
           +   L          DL  +P +D  T +L     T GI+  +SS M+  L    P   E
Sbjct: 205 IDLCL---TMSDGNFDLDNLPLNDKTTMNLFRQGDTCGIYDFDSSTMQDLLRQAAPQTFE 261

Query: 642 DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
           +++AL ++  PGP+D    Y  RKNG + I  + P +  +L  T G+ IYQEQ+M IAQ 
Sbjct: 262 ELVALYTMCHPGPLDWTTEYIARKNGDKPIEYVIPELREILGYTYGMTIYQEQIMLIAQR 321

Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
           L+ ++  E+D LRR +GKK  +     K++FI+  ++NG        IFE       Y F
Sbjct: 322 LASFTPGESDQLRRDLGKKKYDSFVVLKDKFIAQGTRNGFPTDALRGIFEEWEHTTCYTF 381

Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
            +SHA  Y  ++YQ  ++K H+P EF  A  T+E+
Sbjct: 382 IRSHAVCYTFLAYQIGYLKVHFPKEFATAYKTMEL 416



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 82/150 (54%), Gaps = 12/150 (8%)

Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
           +LP++ +    D     E  LR+  V G   R  +        + +   R+D+EL  I  
Sbjct: 7   LLPKYWDNASGD-----EEYLRDLVVEGACERYGED------WSDELANRIDYELRYIED 55

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
             ++ YFLIVAD++Q A++    V PGRGS AGS+  Y L IT IDPL+F LLFERF NP
Sbjct: 56  SGYADYFLIVADYVQHAREIG-RVSPGRGSAAGSIVNYCLGITSIDPLKFGLLFERFCNP 114

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
           D+  +PD DID     + ++  Y+   Y H
Sbjct: 115 DKRLLPDIDIDVDMATQGKMFDYLSEHYDH 144


>gi|22299612|ref|NP_682859.1| DNA polymerase III subunit alpha [Thermosynechococcus elongatus BP-1]
 gi|22295796|dbj|BAC09621.1| DNA polymerase III alpha subunit [Thermosynechococcus elongatus BP-1]
          Length = 452

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 152/292 (52%), Gaps = 22/292 (7%)

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSH+ AY  ++YQTA++K ++PVE++AA +T    + +K++++        I+++PP 
Sbjct: 37   FNKSHSTAYGYVTYQTAFLKANFPVEYMAALLTANSGDQDKVQRYIATCLSMGIEVLPPD 96

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV-----DS 874
            VN   +DF    N+I + L+A++ VG      I++A A+   F SL DFC RV     DS
Sbjct: 97   VNRSDIDFTPVGNKILFGLSAVRNVGQGVIEAILQARAEGGAFQSLADFCERVPRAGGDS 156

Query: 875  KKLNRRVLESLVFAGALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----- 927
            + LNRR LESL+  GA+D      +R QL+Q L  + ++A    K+R     N+F     
Sbjct: 157  RILNRRALESLIACGAMDSLHPQRNRNQLMQDLPLVLEWALARAKDRAVGQVNLFDMLAG 216

Query: 928  ---AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL-DVYKP--ILRKMGIK 981
                  KG++    +         + +   E+ +LGFY S HPL D+++P  ++  + + 
Sbjct: 217  DSSNESKGSYDPAPSAPPVDDLPDTEKLRQEKDLLGFYVSNHPLKDIHRPAAMIAPISLA 276

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              E+         + + A++   +   T++G R+  V   +   + EA  FP
Sbjct: 277  NLEQHTGQ---GVVSVIALLTGLKSITTKRGERMAIVQLEDLTGQAEAVVFP 325


>gi|323351878|ref|ZP_08087529.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
           sanguinis VMC66]
 gi|322121935|gb|EFX93667.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
           sanguinis VMC66]
          Length = 485

 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 89/232 (38%), Positives = 132/232 (56%), Gaps = 17/232 (7%)

Query: 250 PDH-YLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           P+H +L     +   F +  PE+L N  ++ R   + +      LPRF      + ++  
Sbjct: 219 PNHEFLLGPDALAGAFKETFPESLANLEKLVRHVHYDINRELK-LPRF------NRERPA 271

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             ELR ++ AGL+ R   G +        Y++RLD EL+VI +M F  YFLIV D +++ 
Sbjct: 272 VEELRERSEAGLKKRGLTGKL--------YQERLDQELDVIHQMGFDDYFLIVWDLLRFG 323

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           +     +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R
Sbjct: 324 RSQGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYR 383

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            E IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I
Sbjct: 384 PEFIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKI 435



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/66 (24%), Positives = 35/66 (53%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36  IQLDTKTVYSFMDSLIPIKKYVQKAKELGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72  GCQLDI 77
           G +L +
Sbjct: 96  GLELSL 101


>gi|37784576|gb|AAP47639.1| DnaE precursor [Aphanothece halophytica]
          Length = 255

 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 125/218 (57%), Gaps = 11/218 (5%)

Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
           FNKSH+ AY+ ++YQTA++K +YPVE++AA +T   +N +KI+K+    R+ NI + PP 
Sbjct: 38  FNKSHSTAYSYVTYQTAYLKANYPVEYMAALLTASSNNTDKIEKYIDTCRRMNIDVEPPD 97

Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA--SADKPFDSLEDFCSRVDSKKLN 878
           +N   +DF   + +I + L+A++ +G     +I+ A   A   F SL D C+R+D   +N
Sbjct: 98  INRSQIDFTPDNEKILFGLSAVRNLGQGAIENILAAREEAGGTFTSLADLCARIDLHTVN 157

Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---------H 929
           RR LE+L++ GA D    +R QLL  L+ +  +AQ   K++ +   N+F          H
Sbjct: 158 RRALEALIYCGAFDKINSNRNQLLHDLEPVLSWAQSRAKDKASGQTNLFEALNSSQEEDH 217

Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  + D  T       +++ + ++E+ +LGFY   HP
Sbjct: 218 NRSDYKDVPTASPVEDFSATDKLKHEKDLLGFYVXXHP 255


>gi|159026962|emb|CAO86680.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 445

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 158/295 (53%), Gaps = 26/295 (8%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   DN +K++K+ ++ ++ NI 
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDNQDKVEKYRENCQKMNID 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA--SADKPFDSLEDFCSRVD 873
            + PP +N     F     +I + L+A++ +G      I++A  +    F SL DFC RVD
Sbjct: 93   VEPPDINRSQKHFTPIGRKILFGLSAVRNLGENAIEAILKAREATGGKFTSLGDFCERVD 152

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             + +N+R LE+L++ GA D    +R QL++ L+ +  +AQ   K + +   NIF    G+
Sbjct: 153  LRVINKRALETLIYCGAFDKIQPNRHQLIEDLELVVAWAQKRTKEKESGQMNIFDMLGGS 212

Query: 934  FSDK-----------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK---PILRKMG 979
              +K             +E FS++   ++ E E   LGFY S HPL   +    +L  + 
Sbjct: 213  TENKQESEFEQSPSATPVEDFSLQ-EKLKLEKEH--LGFYVSEHPLKALQRAAQVLSPIN 269

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKK--TRKGSRIGWVTFSEPAKEYEANFF 1032
            +   EE          +++A+V+    KK  T+KG+ + ++T  + + + EA  F
Sbjct: 270  LADLEE-----HKTRKKVSAIVLLNAVKKIMTKKGTPMAFLTLEDASGQSEAVVF 319


>gi|57867460|ref|YP_189102.1| DNA polymerase III, alpha subunit, putative [Staphylococcus
           epidermidis RP62A]
 gi|57638118|gb|AAW54906.1| DNA polymerase III, alpha subunit, putative [Staphylococcus
           epidermidis RP62A]
          Length = 828

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 133/534 (24%), Positives = 244/534 (45%), Gaps = 65/534 (12%)

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           D DID    +R  +I  ++  YG +RV  + T+G+  AK+A++   R L +P ++   L 
Sbjct: 2   DIDIDCEGSKRQRIIGALKKHYGEDRVLNVCTYGTEGAKSAIKMAARGLNIPDTEAQYLG 61

Query: 477 KLIPNDPAHPVSLQAI---------ADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
             I  +     S++             D++F+      P   RLLE + KLEGL      
Sbjct: 62  SFIKVERGQQWSIKDTLYGNPDKDRKPDTQFKNEMEKYP---RLLETAMKLEGLVTRRGI 118

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           HA G++I +    +   +      D+ VTQ+N+   E  G +KFD L ++ L  ++ +L+
Sbjct: 119 HAGGVIIFNDEAYKNNAIMTASGGDVHVTQYNLSDSEYMGGVKFDLLSVENLDRIRATLE 178

Query: 588 FLAQ-------RGVKVDLS--LIP----FDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L++       + ++ + S  L P     + +E + L +T     +FQ ++   +  L+ 
Sbjct: 179 LLSKDVLIDNTKSLRENFSDLLHPKNLDLESNEYFELASTGEINDLFQFQTEIGQTTLKR 238

Query: 635 MQPDCIEDIIALVSLYR------PGPIDNIVVYNNRKN-----------GKEKIVSIHPL 677
           +QP+  E   A  SL R        PID  + + N  N            +E+I     +
Sbjct: 239 VQPETFEQFCAANSLMRLQSDGEEQPIDKYIRHKNDINEWYKEMREFGLNEEEI----KI 294

Query: 678 IDPMLKETQGVIIYQEQVMQIA--QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
           ++  L   +G+ I QE  M ++    +S +++ E + LR+A+ K     +D+ K  F S 
Sbjct: 295 MEEHLLHDKGLNITQENSMGLSADNRISNFTILEQNKLRKAIAKPKGSALDQIKSLFYSK 354

Query: 736 ASKNGISKTIAVNIFEL-LAKFADYGFNKSHAAAYAVISYQTAWMKTHYP-VEFLAASMT 793
             + G  +     ++ +  A    Y F+  H  AY+VI  Q   +   +P + +  A + 
Sbjct: 355 GKECGAREVFLDYVWNVQFAMQFSYSFSLLHTTAYSVIGIQNLELNRRFPRIYWQTACLN 414

Query: 794 LEMDNV---------EKIKKFCQDARQFNIQIMPPSVNTPCVDFK--VGDNRIYYSLAAI 842
           ++ D++         EKI       ++  + +  PS+N   ++F   V  N I Y L  +
Sbjct: 415 VDSDSISTDSKDIDYEKIANGIGKMKENGVTVKLPSINKSTLEFSPDVEHNAIVYGLKPV 474

Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRV-DSKKLNRRVLESLVFAGALDCFG 895
           K +      HI+   A++P+ SL+D  +++ D+K +  + L S+V +G LD FG
Sbjct: 475 KNINNEIVDHII---ANRPYHSLDDVLTKLYDTKLITNKHLISIVKSGMLDEFG 525


>gi|56750961|ref|YP_171662.1| DNA polymerase III subunit alpha [Synechococcus elongatus PCC 6301]
 gi|81299381|ref|YP_399589.1| DNA polymerase III subunit alpha [Synechococcus elongatus PCC 7942]
 gi|56685920|dbj|BAD79142.1| DNA polymerase III alpha subunit [Synechococcus elongatus PCC 6301]
 gi|81168262|gb|ABB56602.1| DNA polymerase III, alpha subunit / Intein [Synechococcus elongatus
            PCC 7942]
          Length = 447

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 143/282 (50%), Gaps = 9/282 (3%)

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSH+ AY  +++QTA++K ++PVE++AA +T+   N +K++K+  +     I+++PP 
Sbjct: 38   FNKSHSTAYGYVTFQTAYLKANFPVEYMAALLTVNSGNADKVQKYIANCAAMGIEVLPPD 97

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNR 879
            +N   VDF    +RI + L+AI+ +G      I+ A     PF SL D C RVD+  LNR
Sbjct: 98   INRSGVDFTPTGDRILFGLSAIRNLGLGAIESILAARDVGGPFLSLADLCDRVDTGSLNR 157

Query: 880  RVLESLVFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            R +ESL+ AGALD    G +R QL+  L  +  +A    K+R +   N+F       S+ 
Sbjct: 158  RAMESLIHAGALDVLETGANRQQLVADLPLVIDWANSRAKDRASGQGNLFDMLGSNDSNS 217

Query: 938  ITLEKFSVENSSVRFENE------QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
              L+      +   +  +      + +LGFY S HPL V +   R +      +      
Sbjct: 218  SPLDTAPKAPAVPDYSPDEKLKLEKELLGFYLSDHPLKVVQEPARLLAPASISDLEDYCD 277

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               I   A++   +   T+KG R+  +   + +   EA  FP
Sbjct: 278  RGLISTIALLTEVKPVVTKKGDRMAILRIEDLSGNTEAVVFP 319


>gi|186685733|ref|YP_001868929.1| DNA polymerase III subunit alpha [Nostoc punctiforme PCC 73102]
 gi|186468185|gb|ACC83986.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Nostoc punctiforme
            PCC 73102]
          Length = 450

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 149/296 (50%), Gaps = 23/296 (7%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T    + +K++++  +     I 
Sbjct: 33   IASNCFNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTANSGDTDKVQRYITNCTNMGIS 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDS 874
            I PP +N   VDF     +I +  +A++ VG      I+EA  +   F SL DFC RVD 
Sbjct: 93   IDPPDINRSGVDFTPTLGKILFGFSAVRNVGQNAIACILEARNETGEFKSLADFCDRVDL 152

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            + +NRR LESL++ GA D    +R QL+   + +  +AQ   K+R +   N+F      F
Sbjct: 153  RAVNRRTLESLIYCGAFDKIESNRQQLINDSELVYDWAQSRAKDRASGQGNLFDLLGDGF 212

Query: 935  S---DKITLEKFSVENSS---------VRFENEQRVLGFYFSGHPLDVYK---PILRKMG 979
            S   +K     F     S          + + E+ +LGFY S HPL   +   P+L  + 
Sbjct: 213  SSTQNKRVNNAFETAPKSKPVTDLPPQKKLQMEKELLGFYVSDHPLKSLRQIAPLLTPIN 272

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKK--TRKGSRIGWVTFSEPAKEYEANFFP 1033
            +    E     +  + RL A+V+    KK  T+KG ++  +   +   + EA  FP
Sbjct: 273  LSQLGE-----QREDTRLCAVVMLNNVKKVVTKKGDQMAILQIEDLTTQSEAVVFP 323


>gi|255657859|ref|ZP_05403268.1| DNA polymerase III, alpha subunit [Mitsuokella multacida DSM 20544]
 gi|260850049|gb|EEX70056.1| DNA polymerase III, alpha subunit [Mitsuokella multacida DSM 20544]
          Length = 826

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 190/397 (47%), Gaps = 44/397 (11%)

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ----AKAALRDVGRALQMPYSQVDR 474
           D D     R  VI +V+  YG+  V ++ T G  +      A    V +A Q  +++   
Sbjct: 3   DSDLSTLNRGRVIEHVKEMYGN--VCKVQTLGYTKDPDKPSAGKEAVLKAWQALFNKYKD 60

Query: 475 LCKLIPN--------DPAHPVSLQAIADDSRFREARLAD----------PSVDRLLEISQ 516
              +IP         DP+   + +   + S++ E+ + D               L+++++
Sbjct: 61  NAPMIPCEEQGGLMIDPSWEYNPKFKTEASKYVESSIDDLQDAPISLNEEQKAELIDVAK 120

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ--------FNMKWIEKAGL 568
              G       HA+ +++    L    P+     +D    +        ++   +E+ G 
Sbjct: 121 HFCGRIDKIGVHASAVLVTPDDLVNYTPVEGCYSNDTSTKKREYIRTACYSFHELEQRGN 180

Query: 569 IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
           +K D LGL TL L+ K + ++   G  ++L  IP DD + Y + +     G+FQ+ES GM
Sbjct: 181 LKLDLLGLNTLDLIDKCMKYI---GNDMNLDDIPMDDVKAYEMYSNGNLDGVFQMESPGM 237

Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDP---MLK 683
           R+  + +   C +D+ ALV+LYRPGP+D+ ++  Y + KNG     ++  L D    + K
Sbjct: 238 RKVAKELHVSCFDDVAALVALYRPGPLDSGMMQQYIDGKNG----AAVDYLCDAYKEVTK 293

Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            T GVI+YQEQ M++A  ++GYSL EAD+LR+ +G+K   ++D   + FI+   K+G S 
Sbjct: 294 NTFGVIVYQEQCMKLAMKMAGYSLGEADMLRKVIGRKEMTKIDAAVKEFITRCMKHGYSH 353

Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            +A  +   +     Y FNK  +    V+ +  A  K
Sbjct: 354 EVAEKVGMQIKAAGRYLFNKCLSGRECVVMHTGARTK 390



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 123/269 (45%), Gaps = 36/269 (13%)

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+ AY  +SY+TA++K HYPV+F+ A +  + D  E I  +  + +   I+I+PPS+  
Sbjct: 529  SHSVAYGRLSYKTAYLKAHYPVQFMCALLNTK-DKQEDILPYVANCKAMGIRILPPSLFE 587

Query: 824  PCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRV 881
               +++ VG+N I   L  IKGVG         A  D+    + +D  +   S      V
Sbjct: 588  GNREWEIVGNNAIRVGLTYIKGVGKKLVTEKYGAFNDREMLTTWKDIVAYNSSD-----V 642

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKY----AQWVEK---------NRTNKHENIFA 928
            ++SL+ AGALD    SR  ++ +L   Q++    AQ  E+         N TN  +   A
Sbjct: 643  VKSLISAGALDFLKKSRGWMMGNLLETQRFTKRMAQCEERFNYYRDQYDNATNDKDKARA 702

Query: 929  -HEKGTFSDKITLEKFSVENSSVRFEN---EQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                  ++DKI       E   V F+N   E +VLGF FS  P D+         + G  
Sbjct: 703  IRMANQWNDKINATILH-EKPEVSFDNAAGEMKVLGFSFSSLP-DI---------LTGIA 751

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             SV  I   N    A+V  K      KGS
Sbjct: 752  SSVHEITTKNGNKMALVTFKTDYGDFKGS 780


>gi|307152451|ref|YP_003887835.1| nucleic acid-binding OB-fold tRNA/helicase-type [Cyanothece sp. PCC
            7822]
 gi|306982679|gb|ADN14560.1| nucleic acid binding OB-fold tRNA/helicase-type [Cyanothece sp. PCC
            7822]
          Length = 452

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 153/290 (52%), Gaps = 12/290 (4%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   D+ +K++K+ ++ ++  I 
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDSQDKVEKYRENCKKMGID 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA--SADKPFDSLEDFCSRVD 873
            + PP +N    DF     +I + L+A++ +G     +I++A   A   F+SL DFC RVD
Sbjct: 93   VEPPDINRSQKDFTPVGEKILFGLSAVRNLGENAIENILKAREEAKGKFESLADFCLRVD 152

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG- 932
             + +NRR LE+L++ GA D    +R QL+Q LD +  +AQ   K + +   ++F    G 
Sbjct: 153  LRVVNRRALETLIYCGAFDNINNNRNQLIQYLDIVIPWAQKRTKEKESGQLSLFDSLGGL 212

Query: 933  TFSDKITLEKF-------SVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            T  ++ +  KF       SVE  S+  + + E+  LGFY S HPL       + +     
Sbjct: 213  TVDEENSESKFDLVPSLPSVEPFSLDQKLKLEKEHLGFYVSEHPLQSIVEAAKFLSPINL 272

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             E         I    M+ S ++  T++G  + +V   + + + E   FP
Sbjct: 273  NELENQSTRKMISAVVMINSVKKITTKEGKPMAFVGLEDISGQVEGIVFP 322


>gi|226343801|gb|ACO48523.1| DnaE [Escherichia coli]
          Length = 142

 Score =  147 bits (372), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 77/147 (52%), Positives = 98/147 (66%), Gaps = 8/147 (5%)

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP+F   +        E+ L  +A  GLE RLA        +  
Sbjct: 1   EIAKRCNVTVRLGEXFLPQFPTGD-----MSTEDYLVKRAKEGLEERLAFLFPDEEERVK 55

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL I
Sbjct: 56  RRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKI 115

Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFD 419
           TD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 116 TDLDPLEFDLLFERFLNPERVSMPDFD 142


>gi|226343825|gb|ACO48535.1| DnaE [Escherichia coli]
          Length = 142

 Score =  147 bits (371), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/147 (52%), Positives = 97/147 (65%), Gaps = 8/147 (5%)

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC   +++    LP+F   +        E+ L  +A  GLE RLA        +  
Sbjct: 1   EIAKRCXVTVRLGEXFLPQFPTGD-----MSTEDYLVKRAKEGLEERLAFLFPDEEERVK 55

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL I
Sbjct: 56  RRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKI 115

Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFD 419
           TD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 116 TDLDPLEFDLLFERFLNPERVSMPDFD 142


>gi|226343795|gb|ACO48520.1| DnaE [Escherichia coli]
 gi|226343797|gb|ACO48521.1| DnaE [Escherichia coli]
 gi|226343803|gb|ACO48524.1| DnaE [Escherichia coli]
 gi|226343805|gb|ACO48525.1| DnaE [Escherichia coli]
 gi|226343807|gb|ACO48526.1| DnaE [Escherichia coli]
 gi|226343809|gb|ACO48527.1| DnaE [Escherichia coli]
 gi|226343811|gb|ACO48528.1| DnaE [Escherichia coli]
 gi|226343813|gb|ACO48529.1| DnaE [Escherichia coli]
 gi|226343815|gb|ACO48530.1| DnaE [Escherichia coli]
 gi|226343819|gb|ACO48532.1| DnaE [Escherichia coli]
 gi|226343821|gb|ACO48533.1| DnaE [Escherichia coli]
 gi|226343823|gb|ACO48534.1| DnaE [Escherichia coli]
 gi|226343827|gb|ACO48536.1| DnaE [Escherichia coli]
 gi|226343829|gb|ACO48537.1| DnaE [Escherichia coli]
 gi|226343831|gb|ACO48538.1| DnaE [Escherichia coli]
 gi|226343833|gb|ACO48539.1| DnaE [Escherichia coli]
 gi|226343835|gb|ACO48540.1| DnaE [Escherichia coli]
 gi|226343837|gb|ACO48541.1| DnaE [Escherichia coli]
 gi|226343839|gb|ACO48542.1| DnaE [Escherichia coli]
 gi|226343841|gb|ACO48543.1| DnaE [Escherichia coli]
 gi|226343843|gb|ACO48544.1| DnaE [Escherichia coli]
 gi|226343845|gb|ACO48545.1| DnaE [Escherichia coli]
 gi|226343847|gb|ACO48546.1| DnaE [Escherichia coli]
 gi|226343849|gb|ACO48547.1| DnaE [Escherichia coli]
 gi|226343851|gb|ACO48548.1| DnaE [Escherichia coli]
 gi|226343855|gb|ACO48550.1| DnaE [Escherichia coli]
 gi|226343857|gb|ACO48551.1| DnaE [Escherichia coli]
 gi|226343859|gb|ACO48552.1| DnaE [Escherichia coli]
          Length = 142

 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/147 (52%), Positives = 98/147 (66%), Gaps = 8/147 (5%)

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP+F   +        E+ L  +A  GLE RLA        +  
Sbjct: 1   EIAKRCNVTVRLGEYFLPQFPTGD-----MSTEDYLVKRAKEGLEERLAFLFPDEEERVK 55

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL I
Sbjct: 56  RRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKI 115

Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFD 419
           TD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 116 TDLDPLEFDLLFERFLNPERVSMPDFD 142


>gi|226343799|gb|ACO48522.1| DnaE [Escherichia coli]
          Length = 142

 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/147 (52%), Positives = 98/147 (66%), Gaps = 8/147 (5%)

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP+F   +        E+ L  +A  GLE RLA        +  
Sbjct: 1   EIAKRCNVTVRLGEYFLPQFPTGD-----MSTEDYLVKRAKEGLEERLAFLFPDEEERLK 55

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL I
Sbjct: 56  RRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKI 115

Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFD 419
           TD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 116 TDLDPLEFDLLFERFLNPERVSMPDFD 142


>gi|226343853|gb|ACO48549.1| DnaE [Escherichia coli]
          Length = 142

 Score =  146 bits (369), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 77/147 (52%), Positives = 97/147 (65%), Gaps = 8/147 (5%)

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP+F            E+ L  +A  GLE RLA        +  
Sbjct: 1   EIAKRCNVTVRLGEYFLPQFPTG-----NMSTEDYLVKRAKEGLEERLAFLFPDEEERVK 55

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL I
Sbjct: 56  RRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKI 115

Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFD 419
           TD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 116 TDLDPLEFDLLFERFLNPERVSMPDFD 142


>gi|224482516|gb|ACN50114.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 142/264 (53%), Gaps = 17/264 (6%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLV 212
            RA    + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+V
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVV 167

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEAL 271
           ATN  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL
Sbjct: 168 ATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEAL 227

Query: 272 ENTVEIARRCSFILQVHAPILPRF 295
            N+VEIA+RC+  +++    LP F
Sbjct: 228 ANSVEIAKRCNVTVRLGEYFLPNF 251


>gi|224482520|gb|ACN50116.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 142/264 (53%), Gaps = 17/264 (6%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLV 212
            RA    + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+V
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVV 167

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEAL 271
           ATN  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL
Sbjct: 168 ATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEAL 227

Query: 272 ENTVEIARRCSFILQVHAPILPRF 295
            N+VEIA+RC+  +++    LP F
Sbjct: 228 ANSVEIAKRCNVTVRLGEYFLPNF 251


>gi|224482470|gb|ACN50091.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 142/264 (53%), Gaps = 17/264 (6%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLV 212
            RA    + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+V
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVV 167

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEAL 271
           ATN  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL
Sbjct: 168 ATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEAL 227

Query: 272 ENTVEIARRCSFILQVHAPILPRF 295
            N+VEIA+RC+  +++    LP F
Sbjct: 228 ANSVEIAKRCNVTVRLGEYFLPNF 251


>gi|224482468|gb|ACN50090.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 142/264 (53%), Gaps = 17/264 (6%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLV 212
            RA    + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+V
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVV 167

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEAL 271
           ATN  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL
Sbjct: 168 ATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEAL 227

Query: 272 ENTVEIARRCSFILQVHAPILPRF 295
            N+VEIA+RC+  +++    LP F
Sbjct: 228 ANSVEIAKRCNVTVRLGEYFLPNF 251


>gi|224482510|gb|ACN50111.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 142/264 (53%), Gaps = 17/264 (6%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLV 212
            RA    + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+V
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVV 167

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEAL 271
           ATN  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL
Sbjct: 168 ATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEAL 227

Query: 272 ENTVEIARRCSFILQVHAPILPRF 295
            N+VEIA+RC+  +++    LP F
Sbjct: 228 ANSVEIAKRCNVTVRLGEYFLPNF 251


>gi|224482500|gb|ACN50106.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 142/264 (53%), Gaps = 17/264 (6%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLV 212
            RA    + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+V
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVV 167

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEAL 271
           ATN  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL
Sbjct: 168 ATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEAL 227

Query: 272 ENTVEIARRCSFILQVHAPILPRF 295
            N+VEIA+RC+  +++    LP F
Sbjct: 228 ANSVEIAKRCNVTVRLGEYFLPNF 251


>gi|149002437|ref|ZP_01827371.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP14-BS69]
 gi|147759374|gb|EDK66366.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP14-BS69]
          Length = 419

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/275 (33%), Positives = 145/275 (52%), Gaps = 27/275 (9%)

Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           MQ+AQ  +G+SL +AD+LRRAMGKK    M + +  FI G+ + G +   A  +F+++ K
Sbjct: 1   MQVAQRFAGFSLGKADILRRAMGKKDVSAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEK 60

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
           FA YGFN+SHA AY+ +++Q A+ KTHYP  F    + L   N +    +  DA +   +
Sbjct: 61  FAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFY--QIMLNSANSD----YLIDALEAGFE 114

Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
           + P S+NT     K+ +  IY  L +IKGV    A  I+E   ++P+ ++EDF +++   
Sbjct: 115 VAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDLALWIIE---NRPYSNIEDFIAKLPEN 171

Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-F 934
            L   +LE LV  G  D F  +R ++  +L N+ +                F  E G+ F
Sbjct: 172 YLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE----------------FVKELGSLF 215

Query: 935 SDKI-TLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
            D I + ++        +F  EQ +LG   S HPL
Sbjct: 216 GDAIYSWQESEDWTEQEKFYMEQELLGIGVSKHPL 250


>gi|224482502|gb|ACN50107.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 142/264 (53%), Gaps = 17/264 (6%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLV 212
            RA    + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+V
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVV 167

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEAL 271
           ATN  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL
Sbjct: 168 ATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEAL 227

Query: 272 ENTVEIARRCSFILQVHAPILPRF 295
            N+VEIA+RC+  +++    LP F
Sbjct: 228 ANSVEIAKRCNVTVRLGEYFLPNF 251


>gi|224482472|gb|ACN50092.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482476|gb|ACN50094.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482482|gb|ACN50097.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482494|gb|ACN50103.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482498|gb|ACN50105.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482508|gb|ACN50110.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482512|gb|ACN50112.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482514|gb|ACN50113.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 142/264 (53%), Gaps = 17/264 (6%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLV 212
            RA    + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+V
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVV 167

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEAL 271
           ATN  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL
Sbjct: 168 ATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEAL 227

Query: 272 ENTVEIARRCSFILQVHAPILPRF 295
            N+VEIA+RC+  +++    LP F
Sbjct: 228 ANSVEIAKRCNVTVRLGEYFLPNF 251


>gi|224482486|gb|ACN50099.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482490|gb|ACN50101.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 142/264 (53%), Gaps = 17/264 (6%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLV 212
            RA    + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+V
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVV 167

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEAL 271
           ATN  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL
Sbjct: 168 ATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEAL 227

Query: 272 ENTVEIARRCSFILQVHAPILPRF 295
            N+VEIA+RC+  +++    LP F
Sbjct: 228 ANSVEIAKRCNVTVRLGEYFLPNF 251


>gi|224482478|gb|ACN50095.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 142/264 (53%), Gaps = 17/264 (6%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLV 212
            RA    + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+V
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVV 167

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEAL 271
           ATN  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL
Sbjct: 168 ATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEAL 227

Query: 272 ENTVEIARRCSFILQVHAPILPRF 295
            N+VEIA+RC+  +++    LP F
Sbjct: 228 ANSVEIAKRCNVTVRLGEYFLPNF 251


>gi|224482506|gb|ACN50109.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 142/264 (53%), Gaps = 17/264 (6%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLV 212
            RA    + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+V
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVV 167

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEAL 271
           ATN  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL
Sbjct: 168 ATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEAL 227

Query: 272 ENTVEIARRCSFILQVHAPILPRF 295
            N+VEIA+RC+  +++    LP F
Sbjct: 228 ANSVEIAKRCNVTVRLGEYFLPNF 251


>gi|224482480|gb|ACN50096.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482484|gb|ACN50098.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482496|gb|ACN50104.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 142/264 (53%), Gaps = 17/264 (6%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLV 212
            RA    + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+V
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVV 167

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEAL 271
           ATN  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL
Sbjct: 168 ATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEAL 227

Query: 272 ENTVEIARRCSFILQVHAPILPRF 295
            N+VEIA+RC+  +++    LP F
Sbjct: 228 ANSVEIAKRCNVTVRLGEYFLPNF 251


>gi|224482518|gb|ACN50115.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 142/264 (53%), Gaps = 17/264 (6%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLV 212
            RA    + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+V
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVV 167

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEAL 271
           ATN  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL
Sbjct: 168 ATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEAL 227

Query: 272 ENTVEIARRCSFILQVHAPILPRF 295
            N+VEIA+RC+  +++    LP F
Sbjct: 228 ANSVEIAKRCNVTVRLGEYFLPNF 251


>gi|224482504|gb|ACN50108.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 142/264 (53%), Gaps = 17/264 (6%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLV 212
            RA    + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+V
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVV 167

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEAL 271
           ATN  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL
Sbjct: 168 ATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEAL 227

Query: 272 ENTVEIARRCSFILQVHAPILPRF 295
            N+VEIA+RC+  +++    LP F
Sbjct: 228 ANSVEIAKRCNVTVRLGEYFLPNF 251


>gi|213691703|ref|YP_002322289.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|322691507|ref|YP_004221077.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|213523164|gb|ACJ51911.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320456363|dbj|BAJ66985.1| putative DNA polymerase III alpha subunit [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|320457794|dbj|BAJ68415.1| putative DNA polymerase III alpha subunit [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 878

 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 160/657 (24%), Positives = 275/657 (41%), Gaps = 83/657 (12%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV+L VHS YSL +G  +++ ++ +     QPAI +TD  ++   +EF +     GI+PI
Sbjct: 21  FVNLHVHSDYSLADGVSTVSELMSEAQRLGQPAIGLTDHGSVGGLMEFWKAGRQRGIKPI 80

Query: 71  IGCQ--------------LDIDMQDNLKMTNQGKTPFPTVP----------SIVLLVSTA 106
           +G +              +  D     + T +  T  P  P           + L   + 
Sbjct: 81  LGVEAYVTPETGRTDTRCVSWDNSWKERNTRRSVTCVPHDPYDVSGGGLFTHLTLWAESD 140

Query: 107 EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
           EG   L++  S   L     +  R+  + L     +GLI  +G  SG I           
Sbjct: 141 EGLVNLMKASSVANLEGLVSRYPRMDNNVLSSF-AKGLICGSGCMSGAIPTRLLLGQFDE 199

Query: 167 AEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
           A +     + +FG D  ++ +  H    +    + +V+LA     PLVAT++  +   +D
Sbjct: 200 ALRMAGELQDIFGRDNFFIEIMDHGLSIEHQIRNDLVELAKRINAPLVATSDVHYAKRDD 259

Query: 225 YEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRC-- 281
              HDV + +    V+    R +  + ++YL++ + M S+FSD+PEA +NT+ IA RC  
Sbjct: 260 SLKHDVRICIETGDVMDGPHRFKFESEEYYLRSSAVMRSLFSDVPEACDNTLLIAERCDT 319

Query: 282 SFILQVHAPILPRFIEKE----CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
            F +     ++P+ +  +     + +Q E E  L+ K           G+I         
Sbjct: 320 GFCVAEDGSLMPQHVGADGRASSEILQGEVEGWLQTK----------YGSIPDSVW---- 365

Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             R   E+ VI       Y + VA      ++    VGPG+G  A S+ AYAL I++IDP
Sbjct: 366 -NRAQHEMAVIRETHAEEYLMAVAYCTNRLREEGHLVGPGKGILARSLVAYALGISEIDP 424

Query: 398 LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
           + + L F  F +      P   +   +     V++Y+ ++YG+   A +I +       A
Sbjct: 425 IEYDLPFTDFQDS---VFPTAVLQTERGLSRRVLQYLCDRYGNGYAAAVIAYSRFNDAKA 481

Query: 458 LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
           ++DV                      +H    Q   D S   E  L D +      I+  
Sbjct: 482 VKDV----------------------SHVCGYQRFWDASS-AEVWLQDNAKK---SIADG 515

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
           L+      S  +  + + ++PL+++  + R   S    T F+ K  ++ GL +    G +
Sbjct: 516 LKDCIYDCSVRSDVLALCNKPLAEVTSIVR-FPSGAESTAFDAKGCDELGLPRLRIAGSR 574

Query: 578 TLTLLQKSLDFLAQRGVK--VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            L ++Q +L F+    V    D S    D+   Y LL+   T GI  L+  GM+  L
Sbjct: 575 VLQVVQDALRFIPDCNVPQVWDDSCSSLDESRVYDLLSAGYTAGIPFLD--GMKSEL 629



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 12/150 (8%)

Query: 771 VISYQTAWMKTHYPVEFLAASMTL--EMDNVEKIKKFCQDARQFNIQIMPPSVNT----P 824
           + +Y+ A++KT Y +EF+ A +    E     K++   ++     I +  P++N      
Sbjct: 659 MFAYRVAYVKTLYTIEFMTAMLNSYNEDGARAKLESIFEEMYCLGIHVRMPNINQSQYYA 718

Query: 825 CVDFKVGDNR-----IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLN 878
                 GD+      I     AI+G+    A  I+   +    + S  DF  RV  +  N
Sbjct: 719 TAYSSTGDDEKSAYGIQLGFNAIRGISEQLAEEIVSTRNKGSAYRSFNDFIRRVSLEHCN 778

Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
              +  L+ AGA DC    R  L Q  +++
Sbjct: 779 AGNVNYLIRAGAFDCVNPCRKALAQCGNDL 808


>gi|218248458|ref|YP_002373829.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 8801]
 gi|218168936|gb|ACK67673.1| DNA-directed DNA polymerase [Cyanothece sp. PCC 8801]
          Length = 448

 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 153/291 (52%), Gaps = 17/291 (5%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   DN +K++K+ ++ ++  I+
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDNQDKVEKYRENCQKMGIE 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDS 874
            + PP +N     F      I + L+A+K +G     +I++A  D+  F SL DFCSRVD 
Sbjct: 93   VEPPDINRSQKHFTPVGEHILFGLSAVKNLGEGAIDNILKAREDEGNFTSLADFCSRVDL 152

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGT 933
            + +N+R LE+L++ GA D    +R QL+  ++ +  +AQ   K + +   N+F      T
Sbjct: 153  RVVNKRALETLIYCGAFDKVQNNRKQLINDIELVTAWAQKRAKEKESGQLNLFDLVGNST 212

Query: 934  FSDKITLEKFSVENSS---------VRFENEQRVLGFYFSGHPLDVYK---PILRKMGIK 981
              +  +   F    SS          R + E+  LGFY S HPL   K    IL  + + 
Sbjct: 213  SQNGASNSDFEQAPSSPAVADFPLPERLKLEKEHLGFYVSEHPLKSIKKAAAILSPINLS 272

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              EE  +  +   I    MV + ++  T++G  + ++T  + + + EA  F
Sbjct: 273  ELEEQKSKQK---ISAVVMVNTIKKIVTKQGKNMAFLTLEDISGQLEAVVF 320


>gi|257061525|ref|YP_003139413.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 8802]
 gi|256591691|gb|ACV02578.1| nucleic acid binding OB-fold tRNA/helicase-type [Cyanothece sp. PCC
            8802]
          Length = 448

 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 153/291 (52%), Gaps = 17/291 (5%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   DN +K++K+ ++ ++  I+
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDNQDKVEKYRENCQKMGIE 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDS 874
            + PP +N     F      I + L+A+K +G     +I++A  D+  F SL DFCSRVD 
Sbjct: 93   VEPPDINRSQKHFTPIGEHILFGLSAVKNLGEGAIDNILKAREDEGDFTSLADFCSRVDL 152

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGT 933
            + +N+R LE+L++ GA D    +R QL+  ++ +  +AQ   K + +   N+F      T
Sbjct: 153  RVVNKRALETLIYCGAFDKVQNNRKQLINDIELVTAWAQKRAKEKESGQLNLFDLVGNST 212

Query: 934  FSDKITLEKFSVENSS---------VRFENEQRVLGFYFSGHPLDVYK---PILRKMGIK 981
              +  +   F    SS          R + E+  LGFY S HPL   K    IL  + + 
Sbjct: 213  SQNGASNSDFEQAPSSPAVADFPLPERLKLEKEHLGFYVSEHPLKSIKKAAAILSPINLS 272

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              EE  +  +   I    MV + ++  T++G  + ++T  + + + EA  F
Sbjct: 273  ELEEQKSKQK---ISAVVMVNTIKKIVTKQGKNMAFLTLEDISGQLEAVVF 320


>gi|226343817|gb|ACO48531.1| DnaE [Escherichia coli]
          Length = 141

 Score =  144 bits (364), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 76/146 (52%), Positives = 97/146 (66%), Gaps = 8/146 (5%)

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP+F   +        E+ L  +A  GLE RLA        +  
Sbjct: 1   EIAKRCNVTVRLGEYFLPQFPTGD-----MSTEDYLVKRAKEGLEERLAFLFPDEEERVK 55

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL I
Sbjct: 56  RRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKI 115

Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDF 418
           TD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 116 TDLDPLEFDLLFERFLNPERVSMPDF 141


>gi|224482488|gb|ACN50100.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 142/264 (53%), Gaps = 17/264 (6%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  +L   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTHLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLV 212
            RA    + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+V
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVV 167

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEAL 271
           ATN  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL
Sbjct: 168 ATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEAL 227

Query: 272 ENTVEIARRCSFILQVHAPILPRF 295
            N+VEIA+RC+  +++    LP F
Sbjct: 228 ANSVEIAKRCNVTVRLGEYFLPNF 251


>gi|224482474|gb|ACN50093.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 141/264 (53%), Gaps = 17/264 (6%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD   L   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTTLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLV 212
            RA    + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+V
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVV 167

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEAL 271
           ATN  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL
Sbjct: 168 ATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEAL 227

Query: 272 ENTVEIARRCSFILQVHAPILPRF 295
            N+VEIA+RC+  +++    LP F
Sbjct: 228 ANSVEIAKRCNVTVRLGEYFLPNF 251


>gi|325663118|ref|ZP_08151568.1| hypothetical protein HMPREF0490_02309 [Lachnospiraceae bacterium
            4_1_37FAA]
 gi|325470572|gb|EGC73802.1| hypothetical protein HMPREF0490_02309 [Lachnospiraceae bacterium
            4_1_37FAA]
          Length = 429

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 147/284 (51%), Gaps = 16/284 (5%)

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAAAYAV+SYQTA++K +YP+EF+AA MT  ++N  K+ ++   ARQ  I+I+PP +N 
Sbjct: 22   SHAAAYAVVSYQTAYLKYYYPIEFMAALMTSVIENPTKVSEYIYAARQMGIKILPPDINR 81

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKK-LNRRV 881
                F V +  I Y LAAIK +G      I+ E   +  +  L+DF  R+  K+ LN+R 
Sbjct: 82   GVSGFSVDEGNIRYGLAAIKSIGKPVIEAIVSEREENGLYRGLKDFIERISLKEMLNKRS 141

Query: 882  LESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            +E+ + AGALD  G +R Q +    Q +DN+ +  ++    + +  + +   +K  F  +
Sbjct: 142  IENFIKAGALDNLGGTRKQFMMIYIQIVDNVNQEKKFSMSGQMSLFDFVDEDQKKEF--E 199

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIR 991
            I L              E+ VLG Y SGHPLD Y+   +K      +  +  EE+  T  
Sbjct: 200  IQLPDVGEYEKETLLAFEKEVLGVYISGHPLDAYEEQWKKSVSATTLDFQLDEETNRTKV 259

Query: 992  GNNIR--LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +  +  +  M+V K  K T+    + ++T  +     E   FP
Sbjct: 260  HDGAKEIIGGMIVGKTIKHTKTNQMMAFITVEDLLGTVEVVVFP 303


>gi|37784580|gb|AAP47641.1| DnaE precursor [Oscillatoria limnetica str. 'Solar Lake']
          Length = 254

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 10/224 (4%)

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
            + A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T   DN +K++++        
Sbjct: 31  GEIASNCFNKSHSMAYGYVTYQTAYLKANYPIEYMAALLTANSDNQDKVQRYIATCLNMG 90

Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRV 872
           I + PP +N   VDF     +I + L A++ VG      I+E+   D PF +L D C RV
Sbjct: 91  IAVEPPDINRSGVDFTPLSGKILFGLNAVRNVGHAAILCILESREKDGPFQNLADLCDRV 150

Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI---FAH 929
           D + +NRR LESL+  GA+DC   +R QLL+ L  +  +A    K+R +   +I   F  
Sbjct: 151 DLRTVNRRALESLIQCGAMDCLNSNRHQLLEDLGYVIDWAHTRAKDRASGQGSIFDLFGD 210

Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQR------VLGFYFSGHP 967
            +     K  LE+         F  +++      +LGFY S HP
Sbjct: 211 SQEEQPQKKGLEQAPKAPEVADFTPQEKLRLEKDLLGFYISDHP 254


>gi|224482492|gb|ACN50102.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 141/264 (53%), Gaps = 17/264 (6%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD   L   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTILCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLV 212
            RA    + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+V
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVV 167

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEAL 271
           ATN  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL
Sbjct: 168 ATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEAL 227

Query: 272 ENTVEIARRCSFILQVHAPILPRF 295
            N+VEIA+RC+  +++    LP F
Sbjct: 228 ANSVEIAKRCNVTVRLGEYFLPNF 251


>gi|119512954|ref|ZP_01632016.1| DNA polymerase III subunit alpha [Nodularia spumigena CCY9414]
 gi|119462407|gb|EAW43382.1| DNA polymerase III subunit alpha [Nodularia spumigena CCY9414]
          Length = 448

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 159/322 (49%), Gaps = 41/322 (12%)

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            ER+ + A KNG+   IA N F           NKSH+ AY  ++YQTA++K +YP+E++A
Sbjct: 21   ERYHNFAIKNGL---IASNCF-----------NKSHSTAYGYVTYQTAYLKANYPLEYMA 66

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +T    + +K++K+  +     I I PP +N   +DF     +I +   A++ VG   
Sbjct: 67   ALLTANSGDTDKVQKYINNCVNMGITIDPPDINRSGLDFTPAAGKILFGFTAVRNVGQNA 126

Query: 850  ARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
               I+ A  +   F SL DFC RVD + +NRR +ESL++ GA D    +R QL+  L+ +
Sbjct: 127  IASILSARNELGQFQSLADFCDRVDLRAVNRRTVESLIYCGAFDKIETNRQQLINDLELV 186

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-------------LEKFSVENSSVRFENE 955
              +AQ  +K+R +   NIF       ++  T             ++ F  +    +   E
Sbjct: 187  YDWAQSRDKDRASGQGNIFDLLGTNVTNNQTASNAFEAVPKAQPVQDFPPQE---KLRKE 243

Query: 956  QRVLGFYFSGHPLDVYK---PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK--TR 1010
            + +LGFY S HPL   +    +L  + +   +E     +  + ++ A+++    KK  T 
Sbjct: 244  KELLGFYVSDHPLKSLRQAASLLSPINLSQIKE-----QKEDTKVCAVIMLNNVKKVMTN 298

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            KG+++  +   +   + EA  F
Sbjct: 299  KGAQMAILQIEDLTAQSEAVVF 320


>gi|113475572|ref|YP_721633.1| DNA polymerase III subunit alpha [Trichodesmium erythraeum IMS101]
 gi|110166620|gb|ABG51160.1| DNA polymerase III, alpha subunit / Intein [Trichodesmium erythraeum
            IMS101]
          Length = 517

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 152/295 (51%), Gaps = 20/295 (6%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +Y +E++AA +T    + +K++K+  + ++FNI+
Sbjct: 33   IASNCFNKSHSTAYAYVAYQTAYLKANYSLEYMAALLTANSGDQDKVQKYLANCQKFNIE 92

Query: 816  IMPPSVNTPCVDF----KVG----DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLE 866
            + PP++N   VDF    KV      ++I   L+A+K VG      I++A  +   F SL 
Sbjct: 93   VEPPNINQSEVDFTPLPKVATKEIKDKILVGLSAVKNVGEGAIEAILKARKEGGEFKSLA 152

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            D C RV+   LN R LESL+  GA D    +R QL++ L+ + K+AQ   K+R     ++
Sbjct: 153  DLCDRVNLNALNSRTLESLIKCGAFDKIEANRHQLIKDLEGVMKWAQDRNKDRNIGQLSL 212

Query: 927  FAH-----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP---ILRKM 978
            F +     +   F         S   +  + E E+ +LGFY S HPL   +    I   +
Sbjct: 213  FDNHIPGAKNSAFDSVPKSSPVSDFPAKEKLEYEKEILGFYVSDHPLKYAQEQNQIQDAI 272

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             I   +E  +  +   I+L  M+   +   T+KG  + ++   +   + +A  FP
Sbjct: 273  SIAQMKEKKSNSK---IKLVVMLAGIKPHVTKKGDPMAFIQVEDMTGQLDAVVFP 324


>gi|282899107|ref|ZP_06307088.1| hypothetical protein CRC_00420 [Cylindrospermopsis raciborskii
            CS-505]
 gi|281196023|gb|EFA70939.1| hypothetical protein CRC_00420 [Cylindrospermopsis raciborskii
            CS-505]
          Length = 448

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 144/288 (50%), Gaps = 18/288 (6%)

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSH+ AY  ++YQTA++K +YP+E++AA +T    + +K++K+  +     I+I PP 
Sbjct: 38   FNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTANSGDTDKVQKYLNNCNNMGIEIDPPD 97

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNR 879
            +N   +DF   D +I +  +A++ VG      I++A      F SL DFC R+D + +NR
Sbjct: 98   INRSGLDFTPADQKILFGFSAVRNVGQNAIAGILDARQQGGEFTSLGDFCDRIDLRVVNR 157

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R LESL+  GA D    +R QL++ L+ + ++AQ   K+R     N+F       S+  T
Sbjct: 158  RTLESLIQCGAFDKIESNRHQLVKDLELVYEWAQSRAKDRAIGQGNLFDFMGTGISNVST 217

Query: 940  LEKFSVEN-----------SSVRFENEQRVLGFYFSGHPLDVYK---PILRKMGIKGYEE 985
              K   ++              +   E+ +LGFY S HPL   K    +L  + +    E
Sbjct: 218  SSKNGFKSIPKADPVSDYPPQEKLRMEKELLGFYVSAHPLKNIKQSSSLLAPINLVDLGE 277

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   N + +  M+   ++  T+KG ++  +   +     EA  FP
Sbjct: 278  QKDK---NLVCVVVMLNHVKKVMTKKGEQMAILQIEDLTTTSEAVVFP 322


>gi|157283913|ref|YP_001468181.1| DNA polymerase III, alpha subunit [Kineococcus radiotolerans
            SRS30216]
 gi|151363055|gb|ABS06057.1| DNA polymerase III, alpha subunit [Kineococcus radiotolerans
            SRS30216]
          Length = 1280

 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 108/323 (33%), Positives = 161/323 (49%), Gaps = 36/323 (11%)

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G   DL  I  DDH T+ L+ +  TLG+FQ+ES G R+ L   QP    D++  V+L+RP
Sbjct: 700  GAVPDLDAIALDDHATFELIRSTHTLGVFQIESPGQRELLGKFQPRAFSDLVIDVALFRP 759

Query: 653  GPI--DNIVVYNNRKNGKEKIVS----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            GP+  D I  +    +G           HP + P+L ET GV+I+ EQVM+I  + +G  
Sbjct: 760  GPMAGDMISPFLEGHHGWVATGGPRRLPHPDLTPILSETHGVVIFHEQVMRILDVFTGCG 819

Query: 707  LSEADVLRRAMG---KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            L+ ADV RR +     +++ E D     F + A+  G  + +   +++L+A    +GF +
Sbjct: 820  LARADVWRRHLSDPDARVEVEAD-----FRTAATARGYPRDVVDAVWKLIAAHGGFGFAR 874

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD-NVEKIKKFCQDARQFNIQIMPPSVN 822
            +HAAA+A I+YQ+AW+K HYPV+FL     LE D  +   +    +AR+  I I+P  V 
Sbjct: 875  AHAAAFAAITYQSAWLKAHYPVQFLTG--LLEHDPGMYPRRLLVAEARRLGIAILPVDVQ 932

Query: 823  T-----------PCVDFKVGDNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
            T           P      G+ R  I   L  +K +       I+   A +PF  + DF 
Sbjct: 933  TSTDVWRAELPAPTGQSAGGERRWGIRPPLTVVKDLHAAEVERIV---ATQPFADVGDFR 989

Query: 870  SRVDSKKLNRRVLESLVFAGALD 892
               D  +  R  L  L   GALD
Sbjct: 990  ---DRARPRRPTLIRLARLGALD 1009



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 150/279 (53%), Gaps = 8/279 (2%)

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           LR +A AG+  R    ++AK    +  ++R+  EL V+ R+ ++ YFL V++  +     
Sbjct: 359 LRARADAGIGRRHPGASLAK---VRAVQERVQAELAVVDRLNYATYFLAVSEATRLIHGL 415

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +     RGSG GSV  + L ++++DPL   LLFERF++  R ++PD D+D    RR ++
Sbjct: 416 GV-RATARGSGVGSVLLWLLGVSNVDPLDQGLLFERFISDRRETLPDIDLDVESARRHDI 474

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            R +++++G ERV  + T  + +A+ A+R  G AL +    VD +   +    A  V  +
Sbjct: 475 YRAIRDRFGAERVTLMATTQAYRARGAVRAAGLALGVEPEVVDEVAASLRGVSASRVR-E 533

Query: 491 AIADDSRFRE-ARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
           A+A+    RE A L  +   +D L++++  L+ L RH S H  G+++ D  L    P+  
Sbjct: 534 AMAELPELRELAELVRSHRQLDLLVDVTATLDRLPRHLSMHPCGVILSDASLLTRTPVQA 593

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
                + ++QF+   I+  G +K D LG++  + +  +L
Sbjct: 594 CGIEGMAMSQFDKDDIDPMGWLKLDVLGVRMQSAIAYTL 632


>gi|257458195|ref|ZP_05623349.1| DNA polymerase III subunit alpha [Treponema vincentii ATCC 35580]
 gi|257444489|gb|EEV19578.1| DNA polymerase III subunit alpha [Treponema vincentii ATCC 35580]
          Length = 153

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 97/161 (60%), Gaps = 14/161 (8%)

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
           T   YLK+  EM  +F   PE L NT  IA RC+F +    P+LP +   E D   KEE 
Sbjct: 5   TDQFYLKSAEEMEKLFPGYPEMLSNTCRIAERCNFEIPQPGPLLPVYQIPE-DFATKEE- 62

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                         L Q  + K Y+   ++  +R ++EL +I +M F GYFLIV DFI W
Sbjct: 63  ----------YITHLVQEGLKKRYNPVTEEMTKRAEYELGIIMKMDFVGYFLIVWDFINW 112

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
           AK++ IPVGPGRGSGAGS+ AYA+ ITDIDPL++ LLFERF
Sbjct: 113 AKEHGIPVGPGRGSGAGSIVAYAMRITDIDPLKYKLLFERF 153


>gi|16329834|ref|NP_440562.1| DNA polymerase III subunit alpha [Synechocystis sp. PCC 6803]
 gi|1652319|dbj|BAA17242.1| DNA polymerase III alpha subunit [Synechocystis sp. PCC 6803]
          Length = 458

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 149/292 (51%), Gaps = 22/292 (7%)

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSH+ AYA ++YQTA++K +YPVE++AA +T   D+ EK++K+ ++ ++  I + PP 
Sbjct: 38   FNKSHSTAYAYVTYQTAYLKANYPVEYMAALLTASSDSQEKVEKYRENCQKMGITVEPPD 97

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA---SADKPFDSLEDFCSRVDSKKL 877
            +N     F      I + L+A++ +G      I+ A   S +K F SL DFC++VD + +
Sbjct: 98   INRSQRHFTPLGEAILFGLSAVRNLGEGAIEQIITARDNSEEKRFKSLADFCTQVDLRVV 157

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR +E+L+ AGA D    +R QLL  L+ +  +AQ   K +     NIF       S K
Sbjct: 158  NRRAIETLIMAGAFDGVQSNRNQLLHDLELVIAWAQKRAKEKETGQLNIFDSLTAGESIK 217

Query: 938  IT---------------LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG-IK 981
                             + +FS++    + + E+  LGFY S HPL   +   R +  I 
Sbjct: 218  AKEAANNGFEQEPSAPPVAEFSLQE---KLQLEKEHLGFYVSEHPLKSVQRSARLLSPIN 274

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +     +R     +A +V  K+    + G  + ++T  + + + EA  FP
Sbjct: 275  LVDLDQYKVRQKVSAVAILVAVKKIITKKNGQPMAFLTLEDMSGQSEAVVFP 326


>gi|301646509|ref|ZP_07246383.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            146-1]
 gi|301075262|gb|EFK90068.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            146-1]
          Length = 382

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/261 (34%), Positives = 131/261 (50%), Gaps = 20/261 (7%)

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAI 842
            P EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AI
Sbjct: 1    PAEFMAAGMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 60

Query: 843  KGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGVG      I+EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L
Sbjct: 61   KGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 120

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRF 952
            + SL +  K A    K       ++F    G  ++    E   +E S          V  
Sbjct: 121  MNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVL 172

Query: 953  ENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
            + E+  LG Y +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++
Sbjct: 173  DGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKR 232

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G+RIG  T  + +   E   F
Sbjct: 233  GNRIGICTLDDRSGRLEVMLF 253


>gi|289759528|ref|ZP_06518906.1| DNA polymerase subunit III (alpha) dnaE2 [Mycobacterium
           tuberculosis T85]
 gi|289715092|gb|EFD79104.1| DNA polymerase subunit III (alpha) dnaE2 [Mycobacterium
           tuberculosis T85]
          Length = 325

 Score =  139 bits (350), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 79/207 (38%), Positives = 121/207 (58%), Gaps = 14/207 (6%)

Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK--EEENE 310
           +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F      D+     E++ 
Sbjct: 129 HLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPF------DVPDGHTEDSW 182

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           LR+  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D  ++ + N
Sbjct: 183 LRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDITRFCRDN 237

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
           +I +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID   D+R++V
Sbjct: 238 DI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIESDQREKV 296

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAA 457
           I+YV +KYG +  AQ+    + + ++A
Sbjct: 297 IQYVYHKYGRDYAAQVANVITYRGRSA 323


>gi|282897962|ref|ZP_06305957.1| hypothetical protein CRD_02527 [Raphidiopsis brookii D9]
 gi|281197106|gb|EFA72007.1| hypothetical protein CRD_02527 [Raphidiopsis brookii D9]
          Length = 447

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 141/288 (48%), Gaps = 18/288 (6%)

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSH+ AY  ++YQTA++K +YP+E++AA +T    + +K++K+  +     I+I PP 
Sbjct: 38   FNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTANSGDTDKVQKYLNNCNNMGIEIDPPD 97

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNR 879
            +N   +DF   D +I +  +A++ VG      I++A      F SL DFC R+D + +NR
Sbjct: 98   INRSGLDFTPADQKILFGFSAVRNVGQNAIAAILDAREKGAEFKSLGDFCDRIDLRVVNR 157

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----------A 928
            R LESL+  GA D    +R QL++ L+ + ++AQ   K+R     N+F            
Sbjct: 158  RTLESLIQCGAFDKIESNRHQLVKDLELVYEWAQSRAKDRAIGQGNLFDFMGAGTRNAST 217

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK---PILRKMGIKGYEE 985
                 F      +  S      +   E+ +LGFY S HPL   K    +L  + +    E
Sbjct: 218  SSNNGFKSIPKADPVSDYPPQEKLRMEKELLGFYVSAHPLKNIKQSSSLLAPINLVDLGE 277

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   N + +  M+   ++  T+KG ++  +   +     EA  FP
Sbjct: 278  QKDK---NLVCVVVMLNHVKKVMTKKGEQMAILQIEDLTTTSEAVVFP 322


>gi|330900334|gb|EGH31753.1| error-prone DNA polymerase [Pseudomonas syringae pv. japonica str.
            M301072PT]
          Length = 453

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 113/396 (28%), Positives = 181/396 (45%), Gaps = 38/396 (9%)

Query: 632  LEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
            L  ++P+   D++  V++ RPGPI  D +  Y  R+NG+E  V+  P ++ + K T GV 
Sbjct: 8    LPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRRNGEEA-VTYPPKLESVFKRTLGVP 66

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++QEQVM++A L + Y+  EAD LRRAM   K    ++  +ER  +G  KNG     A  
Sbjct: 67   LFQEQVMEVAILAADYTPGEADELRRAMAAWKRHGGLEPHRERLRTGMLKNGYEADFADR 126

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            IFE +  F  YGF +SHAA++A+++Y + W+K H P  F  A +           +  QD
Sbjct: 127  IFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQD 186

Query: 809  ARQFNIQIMPPSVNTPCVDF---------KVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
            AR+ +I+I P  V     D          +  +  I   L  ++      A  I  A A 
Sbjct: 187  ARRHHIEIRPVDVRYSDWDCSLEPLDHPDRTRNLAIRLGLRMVRSFREEDALRIEVARAK 246

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
            +PF    D   R +   L+ R  E+L  +GA           L+ L   +  A+W E   
Sbjct: 247  RPFVDATDLTLRAE---LDSRAAEALADSGA-----------LRGLIGHRHRARW-EVAG 291

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                  +F  +  +   ++ L   +V    V    +   LG     HPL + +   R++ 
Sbjct: 292  VEAQRPLF-DDLPSEETQVILPLPTVAEDLV---ADYTTLGTTLGPHPLALLR---RQLA 344

Query: 980  IKGYEESVATIRGNNIR---LAAMVVSKQQKKTRKG 1012
             K +  S   +   N R   +A +V+ +Q+  T  G
Sbjct: 345  AKRFRSSQDLLHLENDRTLSVAGLVIGRQRPGTASG 380


>gi|291037377|ref|ZP_06568341.1| DNA polymerase III, alpha subunit [Gluconacetobacter xylinus NBRC
           3288]
          Length = 444

 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 122/223 (54%), Gaps = 8/223 (3%)

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
           Y  R+ G+EK +   P ++ +L++T G+ ++QEQVMQ+A + +G+S SEAD LRRAM   
Sbjct: 5   YLRRRAGQEKEIYPTPELEKVLRKTLGIPLFQEQVMQVAMVCAGFSASEADQLRRAMATF 64

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K    + + + R I G +  G  +T A  IF+ L  F  YGF +SHAA++A+++Y ++WM
Sbjct: 65  KNTGTVSRFRTRLIEGMTARGYPETFAKRIFQQLEGFGSYGFPESHAASFAILAYSSSWM 124

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR---- 834
           K  +P  FLAA +  +        +  +DAR+  ++I P  +N    D    G  R    
Sbjct: 125 KCTHPDVFLAALLNSQPMGFYAPAQLVRDAREHGVEIRPVCINASRWDSTPEGPERDDGL 184

Query: 835 --IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
             +   +  +KG+    A  I+ A  D+PF S++D   R   K
Sbjct: 185 FAVRLGMNLVKGLANEDAARIVAARGDRPFASVDDLWRRAGVK 227


>gi|325663120|ref|ZP_08151570.1| hypothetical protein HMPREF0490_02311 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470574|gb|EGC73804.1| hypothetical protein HMPREF0490_02311 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 182

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 105/174 (60%), Gaps = 8/174 (4%)

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
           I ++D      + T  T G+FQLES+GM+  ++ ++P  +EDIIA +SLYRPGP+D I  
Sbjct: 4   IDYNDKLVLDSIGTGKTDGVFQLESAGMKNFMKELKPQSLEDIIAGISLYRPGPMDFIPQ 63

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
           Y   KN K  I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK
Sbjct: 64  YIKGKNDKGSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKK 123

Query: 721 IKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             + M+++++ F        + G   NGI +  A  I++ +  FA Y FNK   
Sbjct: 124 KADVMERERQSFVYGNIDEGVPGCLNNGIDEKTANKIYDEMIDFAKYAFNKCST 177


>gi|329770058|ref|ZP_08261453.1| hypothetical protein HMPREF0433_01217 [Gemella sanguinis M325]
 gi|328837369|gb|EGF86999.1| hypothetical protein HMPREF0433_01217 [Gemella sanguinis M325]
          Length = 414

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 164/308 (53%), Gaps = 26/308 (8%)

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            FI  +   G  + +A ++F+L+  FA+YGFNKSHA  Y++++Y+ A++K +Y   F+ A 
Sbjct: 8    FIEKSVAAGYDRNVAKSLFDLIVTFANYGFNKSHAVVYSMLAYRLAYLKVYYTKYFMTAL 67

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            +   + + +KI ++ Q+     I+++ P VN    DF V    I ++L AIK VG  ++ 
Sbjct: 68   LNNVISSEKKINEYKQELNNLGIKLIKPDVNVSLSDFSVYKQDIVFALTAIKNVGYRSSY 127

Query: 852  HIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
             I++   +   +  ++DF  R++ KK++ +   SLV AGALD FGY+R  L+      +K
Sbjct: 128  EIVQDRLNFGKYLDIDDFLKRMN-KKVDYQAAASLVKAGALDTFGYNRATLM------KK 180

Query: 911  YAQWVEKNR--TNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGH 966
               + E NR   N      + E G     +TL+   VE+ S+  R + E+ V G YF  H
Sbjct: 181  VKDYYEDNRQYINNVRVALSAETG-----LTLKVEEVEDYSITERIQMEKEVTGTYFLKH 235

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM-VVSKQQKKTRKGSRIGWVTFSEPAK 1025
            P+ V K     + ++          G +I  + + V++K++ KT+ G  + ++T ++   
Sbjct: 236  PVQVEKEKYSYLPLQ--------YIGRDITDSYVEVITKKEIKTKNGDYMAFLTVNDGKN 287

Query: 1026 EYEANFFP 1033
            +Y+   FP
Sbjct: 288  DYDITVFP 295


>gi|298500381|ref|ZP_07010186.1| DNA polymerase III [Vibrio cholerae MAK 757]
 gi|297541074|gb|EFH77128.1| DNA polymerase III [Vibrio cholerae MAK 757]
          Length = 278

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 129/251 (51%), Gaps = 11/251 (4%)

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGT 847
            AA MT +MDN EK+     + +   + ++PP +N+    F V DN  I Y + AIKGVG 
Sbjct: 1    AAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKGVGE 60

Query: 848  TTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 I+EA +    F  L DFC+R+D KK+N+RV+E L+ AGALD  G  R  ++ S+D
Sbjct: 61   GPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMASVD 120

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFSVEN--SSVRFENEQRVLGF 961
            +  + A    +       ++F    G  +D   ++  +   V      VR E E+  LG 
Sbjct: 121  DAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGL 176

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y +GHP+D Y   L K       E+  T R  ++ +A +V++ +   T++G+RIG +T  
Sbjct: 177  YLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLD 236

Query: 1022 EPAKEYEANFF 1032
            + +   E   +
Sbjct: 237  DRSGRMEVMLY 247


>gi|330971218|gb|EGH71284.1| error-prone DNA polymerase [Pseudomonas syringae pv. aceris str.
            M302273PT]
          Length = 437

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 176/386 (45%), Gaps = 38/386 (9%)

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            D++  V++ RPGPI  D +  Y  R+NG+E  V+  P ++ + K T GV ++QEQVM++A
Sbjct: 2    DLVIEVAIVRPGPIQGDMVHPYLRRRNGEED-VTYPPKLESVFKRTLGVPLFQEQVMEVA 60

Query: 700  QLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
             L + Y+  EAD LRRAM   K    ++  +ER  +G  KNG     A  IFE +  F  
Sbjct: 61   ILAADYTPGEADELRRAMAAWKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGS 120

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGF +SHAA++A+++Y + W+K H P  F  A +           +  QDAR+ +I+I P
Sbjct: 121  YGFPESHAASFALLTYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRP 180

Query: 819  PSVNTPCVDF---------KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
              V     D          +  +  I   L  ++      A  I  A A +PF    D  
Sbjct: 181  VDVRYSDWDCSLEPLDHPDRTRNLAIRLGLRMVRSFREEDALRIEAARAKRPFVDATDLT 240

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             R +   L+ R  E+L  +GA           L+ L   +  A+W E         +F  
Sbjct: 241  LRAE---LDSRAAEALADSGA-----------LRGLIGHRHRARW-EVAGVEAQRPLF-D 284

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
            +  +   ++ L   +V    V    +   LG     HPL + +   R++  K +  S   
Sbjct: 285  DLPSEETQVILPLPTVAEDLV---ADYTTLGTTLGPHPLALLR---RQLAAKRFRSSQDL 338

Query: 990  IRGNNIR---LAAMVVSKQQKKTRKG 1012
            +   N R   +A +V+ +Q+  T  G
Sbjct: 339  LHLENDRTLSVAGLVIGRQRPGTASG 364


>gi|307636097|gb|ADN78741.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636099|gb|ADN78742.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636101|gb|ADN78743.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636103|gb|ADN78744.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636105|gb|ADN78745.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636107|gb|ADN78746.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636109|gb|ADN78747.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636111|gb|ADN78748.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636113|gb|ADN78749.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636115|gb|ADN78750.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/114 (59%), Positives = 82/114 (71%), Gaps = 3/114 (2%)

Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
           E+ L  K+  GLE RL         +     +Y +RL  ELNVI +M F GYFLIV +FI
Sbjct: 18  EDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELNVINQMGFPGYFLIVMEFI 77

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           QW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDF
Sbjct: 78  QWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDF 131


>gi|213422542|ref|ZP_03355607.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 149

 Score =  135 bits (340), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 66/150 (44%), Positives = 97/150 (64%), Gaps = 1/150 (0%)

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 1   FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 60

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
           DP   ++ +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 61  DPGMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 119

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
             P+Y D     PVTQF+   +E AGL+KF
Sbjct: 120 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKF 149


>gi|307636191|gb|ADN78788.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636193|gb|ADN78789.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 67/114 (58%), Positives = 82/114 (71%), Gaps = 3/114 (2%)

Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
           E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +FI
Sbjct: 18  EDFLVMKSREGLEERLEFLFPNPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVMEFI 77

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           QW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDF
Sbjct: 78  QWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDF 131


>gi|307636195|gb|ADN78790.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 69/114 (60%), Positives = 83/114 (72%), Gaps = 3/114 (2%)

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFI 364
           E+ L  K+  GLE RL          AQ   +Y +RL  EL+VI +M F GYFLIV +FI
Sbjct: 18  EDFLVMKSREGLEERLEFLFPDPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVMEFI 77

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           QW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDF
Sbjct: 78  QWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDF 131


>gi|307636011|gb|ADN78698.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636013|gb|ADN78699.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636015|gb|ADN78700.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636017|gb|ADN78701.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636019|gb|ADN78702.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636181|gb|ADN78783.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/114 (58%), Positives = 82/114 (71%), Gaps = 3/114 (2%)

Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
           E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +FI
Sbjct: 18  EDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQIELDVINQMGFPGYFLIVMEFI 77

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           QW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDF
Sbjct: 78  QWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDF 131


>gi|307636021|gb|ADN78703.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636023|gb|ADN78704.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636025|gb|ADN78705.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636027|gb|ADN78706.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O395]
 gi|307636029|gb|ADN78707.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636031|gb|ADN78708.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636033|gb|ADN78709.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636035|gb|ADN78710.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae C6706]
 gi|307636037|gb|ADN78711.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636039|gb|ADN78712.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636041|gb|ADN78713.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636043|gb|ADN78714.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636045|gb|ADN78715.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636047|gb|ADN78716.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636049|gb|ADN78717.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636051|gb|ADN78718.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636053|gb|ADN78719.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636055|gb|ADN78720.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636057|gb|ADN78721.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636059|gb|ADN78722.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636061|gb|ADN78723.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636063|gb|ADN78724.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636065|gb|ADN78725.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636067|gb|ADN78726.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636069|gb|ADN78727.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636071|gb|ADN78728.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636073|gb|ADN78729.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636075|gb|ADN78730.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636077|gb|ADN78731.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636079|gb|ADN78732.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636081|gb|ADN78733.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636083|gb|ADN78734.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636085|gb|ADN78735.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636087|gb|ADN78736.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636089|gb|ADN78737.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636091|gb|ADN78738.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636093|gb|ADN78739.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636095|gb|ADN78740.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636117|gb|ADN78751.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636119|gb|ADN78752.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636121|gb|ADN78753.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636123|gb|ADN78754.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636125|gb|ADN78755.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636127|gb|ADN78756.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636129|gb|ADN78757.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636131|gb|ADN78758.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636133|gb|ADN78759.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636135|gb|ADN78760.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636137|gb|ADN78761.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636139|gb|ADN78762.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636141|gb|ADN78763.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636143|gb|ADN78764.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636145|gb|ADN78765.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636147|gb|ADN78766.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636151|gb|ADN78768.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636153|gb|ADN78769.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636155|gb|ADN78770.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636157|gb|ADN78771.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636159|gb|ADN78772.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636161|gb|ADN78773.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636163|gb|ADN78774.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636165|gb|ADN78775.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636167|gb|ADN78776.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636169|gb|ADN78777.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636171|gb|ADN78778.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636173|gb|ADN78779.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636177|gb|ADN78781.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636179|gb|ADN78782.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/114 (58%), Positives = 82/114 (71%), Gaps = 3/114 (2%)

Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
           E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +FI
Sbjct: 18  EDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFI 77

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           QW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDF
Sbjct: 78  QWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDF 131


>gi|307636005|gb|ADN78695.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636007|gb|ADN78696.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636009|gb|ADN78697.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636149|gb|ADN78767.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/114 (58%), Positives = 82/114 (71%), Gaps = 3/114 (2%)

Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
           E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +FI
Sbjct: 18  EDFLVMKSREGLEERLEFLFPDPDVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFI 77

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           QW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDF
Sbjct: 78  QWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDF 131


>gi|37784572|gb|AAP47637.1| DnaE precursor [Aphanizomenon ovalisporum]
          Length = 259

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 118/221 (53%), Gaps = 13/221 (5%)

Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
           FNKSH+ AY  ++YQTA++K +YP+E++AA +T    + +K++K+  +     I I PP 
Sbjct: 38  FNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTANSGDTDKVQKYINNCANMGITIDPPD 97

Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNR 879
           +N   +DF     +I + L+A++ VG      I+ A +    F SL DFC  VD + +NR
Sbjct: 98  INRSGLDFTPAGGKILFGLSAVRNVGQNAIACILSARNEGGDFQSLADFCDGVDLRVVNR 157

Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--- 936
           R +ESL+  GA D    +R QL+  L+ +  +AQ   K+R +   N+F    G+ ++   
Sbjct: 158 RTVESLIHCGAFDKIEANRKQLIHDLELVYDWAQSRAKDRASGQGNLFDLLGGSSANTNH 217

Query: 937 KITLEKFSVE---------NSSVRFENEQRVLGFYFSGHPL 968
           +I    F            +   +   E+ +LGFY S HPL
Sbjct: 218 QIASSTFEAVPKAQPVPDFHPQEKLRMEKELLGFYVSDHPL 258


>gi|307636183|gb|ADN78784.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636185|gb|ADN78785.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636187|gb|ADN78786.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636189|gb|ADN78787.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/114 (58%), Positives = 81/114 (71%), Gaps = 3/114 (2%)

Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
           E+ L  K+  GLE RL         +     +Y  RL  EL+VI +M F GYFLIV +FI
Sbjct: 18  EDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDDRLQVELDVINQMGFPGYFLIVMEFI 77

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           QW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDF
Sbjct: 78  QWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDF 131


>gi|119632807|gb|ABL84408.1| DNA polymerase III alpha subunit [Streptococcus suis]
          Length = 236

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 127/237 (53%), Gaps = 6/237 (2%)

Query: 436 NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
           ++YG    AQI+T+ +  AK A+RDV +    P  ++  + K I    +   + Q    +
Sbjct: 1   DRYGSTHAAQIVTYSTFGAKQAIRDVFKRFGTPEYELSNITKKISFRDSLTSAYQR---N 57

Query: 496 SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
           + FR+   +     +   I+Q++EG  R  S HAAGIV+ D  L+  +P+   +  D+ V
Sbjct: 58  AAFRQIINSKIEYQKAFAIAQQIEGQPRQTSIHAAGIVMSDEELTDTIPL--KIGDDMLV 115

Query: 556 TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTT 614
           TQ++   +E  GL+K DFLGL+ LT +QK  + + +R   ++D++ I  +D +T  L   
Sbjct: 116 TQYDAHAVEANGLLKMDFLGLRNLTFVQKMAEGVRERYQQEIDIAKIDLEDKKTLELFAA 175

Query: 615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
             T GIFQ E  G    L  ++P   EDI+A  SL RPG  D    +  RK+G+E +
Sbjct: 176 GRTKGIFQFEQPGAISLLRRVKPGRFEDIVATTSLNRPGASDYSDNFVKRKHGQETV 232


>gi|307636175|gb|ADN78780.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/114 (58%), Positives = 81/114 (71%), Gaps = 3/114 (2%)

Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
           E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +FI
Sbjct: 18  EDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFI 77

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           QW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDF
Sbjct: 78  QWSKDNYIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDF 131


>gi|169344082|ref|ZP_02865068.1| DNA polymerase III subunit alpha [Clostridium perfringens C str.
           JGS1495]
 gi|169297817|gb|EDS79914.1| DNA polymerase III subunit alpha [Clostridium perfringens C str.
           JGS1495]
          Length = 166

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 101/156 (64%), Gaps = 3/156 (1%)

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC + R  VI YV  KYGH+ V+QIITFG++ A+A +RDVGRA+   Y++VDR+ K IP 
Sbjct: 13  FCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMNYTYAEVDRIAKQIPT 72

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                +  +A+  +   +     +  V  L+++S++LEGL RH+STHAAG+VI  +PL +
Sbjct: 73  VLGVTID-KALDLNPELKTIYDTEERVRELIDVSRRLEGLPRHSSTHAAGVVIASQPLVE 131

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            VP+ ++  S   VTQF+M  +E+ GL+K D   +K
Sbjct: 132 YVPLQKNDES--IVTQFDMTTLEELGLLKMDVRNVK 165


>gi|158316805|ref|YP_001509313.1| DNA-directed DNA polymerase [Frankia sp. EAN1pec]
 gi|158112210|gb|ABW14407.1| DNA-directed DNA polymerase [Frankia sp. EAN1pec]
          Length = 260

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/139 (43%), Positives = 94/139 (67%), Gaps = 4/139 (2%)

Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQG----VIIYQEQVMQIAQLLSGYSLSEADVLR 714
           + Y +RKNG++ +V +HP +D  L++  G    +++YQEQVM IA+ L+GYSL  AD+LR
Sbjct: 120 IEYADRKNGRKPVVPVHPELDGPLEDILGATYHLVVYQEQVMTIARELAGYSLGRADLLR 179

Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           RAMGKK K+ +D     F +G +  G S   A  ++++L  F+ Y FNKSH A Y V+++
Sbjct: 180 RAMGKKKKDVLDAHHAEFTAGMTGRGYSAEAAQALWDVLVPFSGYRFNKSHTAGYGVVAF 239

Query: 775 QTAWMKTHYPVEFLAASMT 793
            TA++K ++P E++AA +T
Sbjct: 240 WTAYLKANFPAEYMAALLT 258


>gi|307327094|ref|ZP_07606283.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
 gi|306887175|gb|EFN18172.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
          Length = 408

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 142/293 (48%), Gaps = 19/293 (6%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y +NK+HAAAYA++SY TA++K +YP E++AA +T   D+ +K   +  + R+  I+
Sbjct: 3    FAGYAYNKAHAAAYALVSYWTAYLKANYPAEYMAALLTSVRDDKDKSAVYLNECRRMGIK 62

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L A++ VG      I+    A   + S  D+  + +
Sbjct: 63   VLPPNVNESEANFTAQGDDVILFGLTAVRNVGQNVVEAIIRGRKAKGKYASFPDYLDKAE 122

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKG 932
            +   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F      
Sbjct: 123  AVVCNKRTTESLIKAGAFDEMGHTRKGLTAHYEALIDNVVAVKRKEAEGQFDLFGGMAGD 182

Query: 933  TFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
                +       VE S V +E       E+ +LG Y S HPL   + +L        + +
Sbjct: 183  GGDGEGPGFGLDVEFSDVEWEKTYLLAQEREMLGLYVSDHPLLGLEQLLAGTA----DAT 238

Query: 987  VATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            VA + G +      + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 239  VAQLTGGDFADGAIVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 291


>gi|297517314|ref|ZP_06935700.1| DNA polymerase III subunit alpha [Escherichia coli OP50]
          Length = 376

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/255 (33%), Positives = 126/255 (49%), Gaps = 20/255 (7%)

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTT 848
            A MT +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIKGVG  
Sbjct: 1    AVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEG 60

Query: 849  TARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                I+EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +
Sbjct: 61   PIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGD 120

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFENEQRV 958
              K A    K       ++F    G  ++    E   +E S          V  + E+  
Sbjct: 121  ALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLDGERET 172

Query: 959  LGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            LG Y +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++G+RIG 
Sbjct: 173  LGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGI 232

Query: 1018 VTFSEPAKEYEANFF 1032
             T  + +   E   F
Sbjct: 233  CTLDDRSGRLEVMLF 247


>gi|300900774|ref|ZP_07118920.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            198-1]
 gi|300355759|gb|EFJ71629.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            198-1]
          Length = 375

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 125/253 (49%), Gaps = 20/253 (7%)

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTA 850
            MT +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIKGVG    
Sbjct: 2    MTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPI 61

Query: 851  RHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              I+EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  
Sbjct: 62   EAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDAL 121

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFENEQRVLG 960
            K A    K       ++F    G  ++    E   +E S          V  + E+  LG
Sbjct: 122  KAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLDGERETLG 173

Query: 961  FYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++G+RIG  T
Sbjct: 174  LYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICT 233

Query: 1020 FSEPAKEYEANFF 1032
              + +   E   F
Sbjct: 234  LDDRSGRLEVMLF 246


>gi|116687207|ref|YP_840453.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
 gi|116652922|gb|ABK13560.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
          Length = 422

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 189/428 (44%), Gaps = 55/428 (12%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A  A + 
Sbjct: 10  PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKVANMP 69

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG         + ++T    +P     +   L    +GY  L E +S +  +   K S
Sbjct: 70  LIIG--------SHFRLTATDGSP---ALAFTALAMNRDGYGNLCEFIS-LGRMRGKKGS 117

Query: 129 VRICLSWLQEIGTEGLIMLTGG--SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            R  L+ L     E       G      I    F  + Q  +  +  F ++FGDR +V L
Sbjct: 118 YR--LAPLDVDHPEAPYAHLRGLPDCLAILSPDFPANEQRLDAHVEWFARVFGDRAWVAL 175

Query: 187 QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             H R  D      V ++A  H +P+VAT+  L          DVL  +     V++   
Sbjct: 176 TLHARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGRPVTECGY 235

Query: 246 PRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             + P  + +L++R  + +I+     ALE TV +ARRC+F L               DD+
Sbjct: 236 -ELAPNAERHLRSRLRLANIYPA--GALEETVRVARRCTFSL---------------DDL 277

Query: 304 QKEEENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
           + E  +EL           R +   G   R   G         D + +++ EL +IA +K
Sbjct: 278 KYEYPDELVPAGTDPATYLREQTYIGARRRFPAGI------PIDVQAQIEHELQLIADLK 331

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           +  YFL V D +Q+A++  I +  GRGS A S   Y L +T++DP R S+LFERF++ +R
Sbjct: 332 YEAYFLTVYDIVQFAREQGI-LCQGRGSAANSSVCYCLGVTEVDPSRQSMLFERFISKER 390

Query: 413 MSMPDFDI 420
              PD D+
Sbjct: 391 NEPPDIDV 398


>gi|330721716|gb|EGG99713.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC2047]
          Length = 377

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 128/254 (50%), Gaps = 13/254 (5%)

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVG 846
            +AA ++ +M N +K+    +D RQ  + I+ P VN     F V   +R+ Y L AIKG+G
Sbjct: 1    MAAVLSADMQNTDKVVILIEDCRQMELPIVLPDVNVSEYKFTVDLQDRVVYGLGAIKGLG 60

Query: 847  TTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+EA      F  L DFC+RVD K++NRR LE+L+ +GA+D  G  R  L+   
Sbjct: 61   EGPVSAIIEARQQGGAFKDLFDFCARVDLKRVNRRALEALIRSGAMDKLGAHRAALMACQ 120

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLG 960
            D   K A+   KN+     ++F    G+ + +         +       VR + E+  LG
Sbjct: 121  DEAVKVAEQHVKNQNAGMMDMFGDMPGSVATQDEDVYANYARIKPWTDKVRLQAEKETLG 180

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             Y  GHP+D Y+  LR +     ++ +  ++   N+ ++A +VV+ +  K+++G  I +V
Sbjct: 181  LYLQGHPIDEYEAELRNIA----KDPLVALQASKNDQKIAGLVVALRTMKSKRGDTIAFV 236

Query: 1019 TFSEPAKEYEANFF 1032
            T  +     E + F
Sbjct: 237  TLDDRTSRMEVSVF 250


>gi|289609822|emb|CBI60377.1| unnamed protein product [Sordaria macrospora]
          Length = 119

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/101 (58%), Positives = 79/101 (78%)

Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
           +PVTQF+MK++E AGL+KFDFLGLKTL++L+ +++ LA+RG+ VDL  + +DD  TY LL
Sbjct: 1   MPVTQFDMKYVEGAGLVKFDFLGLKTLSVLKFAVELLARRGIVVDLDSLLWDDEATYELL 60

Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
               T+G+FQLES GMR+ L  ++P    DIIALVSLYRPG
Sbjct: 61  KRGDTVGVFQLESEGMRRTLTAVRPTNFGDIIALVSLYRPG 101


>gi|330001696|ref|ZP_08304090.1| nucleic acid-binding domain protein [Klebsiella sp. MS 92-3]
 gi|328537572|gb|EGF63793.1| nucleic acid-binding domain protein [Klebsiella sp. MS 92-3]
          Length = 379

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 124/258 (48%), Gaps = 20/258 (7%)

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGV 845
            F    MT +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIKGV
Sbjct: 1    FRGGVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGV 60

Query: 846  GTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            G      I+EA  +   F  L D C+R D KKLNRRVLE L+ +GA D  G  R  L+ S
Sbjct: 61   GEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRAALMNS 120

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFENE 955
            L +  K A    K       ++F    G  ++    E   +E S          V  + E
Sbjct: 121  LGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLDGE 172

Query: 956  QRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +  LG Y +GHP++ Y K I R +G    ++   T RG     A +V++ +   T++G+R
Sbjct: 173  RETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNR 232

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            IG  T  + +   E   F
Sbjct: 233  IGICTLDDRSGRLEVMLF 250


>gi|300990431|ref|ZP_07179199.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            200-1]
 gi|300305731|gb|EFJ60251.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            200-1]
          Length = 375

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 124/253 (49%), Gaps = 20/253 (7%)

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTA 850
            M  +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIKGVG    
Sbjct: 2    MPADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPI 61

Query: 851  RHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              I+EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  
Sbjct: 62   EAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDAL 121

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFENEQRVLG 960
            K A    K       ++F    G  ++    E   +E S          V  + E+  LG
Sbjct: 122  KAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLDGERETLG 173

Query: 961  FYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++G+RIG  T
Sbjct: 174  LYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICT 233

Query: 1020 FSEPAKEYEANFF 1032
              + +   E   F
Sbjct: 234  LDDRSGRLEVMLF 246


>gi|301025930|ref|ZP_07189416.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            69-1]
 gi|300395785|gb|EFJ79323.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            69-1]
          Length = 376

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 124/253 (49%), Gaps = 20/253 (7%)

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTA 850
            M  +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIKGVG    
Sbjct: 3    MPADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPI 62

Query: 851  RHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              I+EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  
Sbjct: 63   EAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDAL 122

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFENEQRVLG 960
            K A    K       ++F    G  ++    E   +E S          V  + E+  LG
Sbjct: 123  KAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLDGERETLG 174

Query: 961  FYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++G+RIG  T
Sbjct: 175  LYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICT 234

Query: 1020 FSEPAKEYEANFF 1032
              + +   E   F
Sbjct: 235  LDDRSGRLEVMLF 247


>gi|301330014|ref|ZP_07222701.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            78-1]
 gi|300843968|gb|EFK71728.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            78-1]
 gi|324008215|gb|EGB77434.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            57-2]
 gi|324014131|gb|EGB83350.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            60-1]
          Length = 374

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 124/253 (49%), Gaps = 20/253 (7%)

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTA 850
            M  +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIKGVG    
Sbjct: 1    MPADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPI 60

Query: 851  RHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              I+EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  
Sbjct: 61   EAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDAL 120

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFENEQRVLG 960
            K A    K       ++F    G  ++    E   +E S          V  + E+  LG
Sbjct: 121  KAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLDGERETLG 172

Query: 961  FYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++G+RIG  T
Sbjct: 173  LYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICT 232

Query: 1020 FSEPAKEYEANFF 1032
              + +   E   F
Sbjct: 233  LDDRSGRLEVMLF 245


>gi|300938593|ref|ZP_07153325.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            21-1]
 gi|301028679|ref|ZP_07191899.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            196-1]
 gi|299878278|gb|EFI86489.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            196-1]
 gi|300456439|gb|EFK19932.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            21-1]
 gi|315285284|gb|EFU44729.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            110-3]
          Length = 372

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 123/250 (49%), Gaps = 20/250 (8%)

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHI 853
            +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIKGVG      I
Sbjct: 2    DMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 61

Query: 854  MEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            +EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A
Sbjct: 62   IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 121

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFENEQRVLGFYF 963
                K       ++F    G  ++    E   +E S          V  + E+  LG Y 
Sbjct: 122  DQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLDGERETLGLYL 173

Query: 964  SGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++G+RIG  T  +
Sbjct: 174  TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 233

Query: 1023 PAKEYEANFF 1032
             +   E   F
Sbjct: 234  RSGRLEVMLF 243


>gi|300949782|ref|ZP_07163757.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            116-1]
 gi|300450847|gb|EFK14467.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            116-1]
          Length = 373

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 123/250 (49%), Gaps = 20/250 (8%)

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHI 853
            +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIKGVG      I
Sbjct: 3    DMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 62

Query: 854  MEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            +EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A
Sbjct: 63   IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 122

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFENEQRVLGFYF 963
                K       ++F    G  ++    E   +E S          V  + E+  LG Y 
Sbjct: 123  DQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLDGERETLGLYL 174

Query: 964  SGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++G+RIG  T  +
Sbjct: 175  TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 234

Query: 1023 PAKEYEANFF 1032
             +   E   F
Sbjct: 235  RSGRLEVMLF 244


>gi|330686382|gb|EGG97983.1| nucleic acid-binding domain protein [Staphylococcus epidermidis
            VCU121]
          Length = 393

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 146/286 (51%), Gaps = 15/286 (5%)

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  ++  + + +K      +
Sbjct: 5    IFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPNYFYANILSNVIGSEKKTAAMIDE 64

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLED 867
            A+  +I I+PP++N     +K   + IY SL AIKG G  + + I+ E   +  F    D
Sbjct: 65   AKHQSITILPPNINESHWFYKATSDGIYLSLGAIKGAGYQSVKLIVDERYQNGDFKDFFD 124

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F  R+  +   R++LESL+  GA D FG +R  LL S+D +      +E++     + +F
Sbjct: 125  FARRLPKRVKTRKLLESLILVGAFDIFGKNRATLLHSIDQVIDQVTDIEQD-----DMLF 179

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                  F+ K + E+       +  E E+  LGFY S HP++  K   +K  +  Y+ S 
Sbjct: 180  ----DFFTPKQSYEEKEELPDQLISEYEKEYLGFYISKHPVE--KEFNKKQYLTIYKLSN 233

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            A    N+  +       ++ +T+ G  + +VT ++     +   FP
Sbjct: 234  AK---NHQPILVQFDQIKRIRTKNGQNMAFVTLNDGIHLLDGVIFP 276


>gi|300920130|ref|ZP_07136583.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            115-1]
 gi|300956069|ref|ZP_07168393.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            175-1]
 gi|300317063|gb|EFJ66847.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            175-1]
 gi|300412864|gb|EFJ96174.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            115-1]
          Length = 374

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 123/250 (49%), Gaps = 20/250 (8%)

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHI 853
            +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIKGVG      I
Sbjct: 4    DMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 63

Query: 854  MEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            +EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A
Sbjct: 64   IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 123

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFENEQRVLGFYF 963
                K       ++F    G  ++    E   +E S          V  + E+  LG Y 
Sbjct: 124  DQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLDGERETLGLYL 175

Query: 964  SGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++G+RIG  T  +
Sbjct: 176  TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 235

Query: 1023 PAKEYEANFF 1032
             +   E   F
Sbjct: 236  RSGRLEVMLF 245


>gi|315300656|gb|EFU59883.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            16-3]
          Length = 374

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 123/250 (49%), Gaps = 20/250 (8%)

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHI 853
            +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIKGVG      I
Sbjct: 4    DMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 63

Query: 854  MEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            +EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A
Sbjct: 64   IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 123

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFENEQRVLGFYF 963
                K       ++F    G  ++    E   +E S          V  + E+  LG Y 
Sbjct: 124  DQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLDGERETLGLYL 175

Query: 964  SGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++G+RIG  T  +
Sbjct: 176  TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 235

Query: 1023 PAKEYEANFF 1032
             +   E   F
Sbjct: 236  RSGRLEVMLF 245


>gi|300932142|ref|ZP_07147425.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            187-1]
 gi|300460079|gb|EFK23572.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            187-1]
          Length = 378

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 123/250 (49%), Gaps = 20/250 (8%)

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHI 853
            +MDN EK+     +  +  ++I+PP +N+    F V D+  I Y + AIKGVG      I
Sbjct: 8    DMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 67

Query: 854  MEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            +EA +    F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A
Sbjct: 68   IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 127

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFENEQRVLGFYF 963
                K       ++F    G  ++    E   +E S          V  + E+  LG Y 
Sbjct: 128  DQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLDGERETLGLYL 179

Query: 964  SGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            +GHP++ Y K I R +G    ++   T RG  I  A +VV+ +   T++G+RIG  T  +
Sbjct: 180  TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 239

Query: 1023 PAKEYEANFF 1032
             +   E   F
Sbjct: 240  RSGRLEVMLF 249


>gi|121533720|ref|ZP_01665547.1| DNA polymerase III, alpha subunit [Thermosinus carboxydivorans Nor1]
 gi|121307711|gb|EAX48626.1| DNA polymerase III, alpha subunit [Thermosinus carboxydivorans Nor1]
          Length = 1221

 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 218/998 (21%), Positives = 385/998 (38%), Gaps = 228/998 (22%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  H+  S ++  +S+  ++   A  + PAIAITD   + +  E  ++A  AGI+ I 
Sbjct: 323  VELHAHTRMSNMDAVVSVKQLIKTAAKWKHPAIAITDHGVVQAFPEAYEEAAKAGIKVIY 382

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +   D++               I++L   A G + L  LVS  + L    ++ RI
Sbjct: 383  GMEGYL-FDDDITQARH----------IIILAKNAIGLRNLYRLVSLSH-LKFLHRTPRI 430

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-----GDRLYVNL 186
              + L+E   EGLI+ +   +G + +A    +S+    ++ +F         G+  ++  
Sbjct: 431  PRTALEE-HREGLILGSACEAGELIQAILAGASEEELLKIASFYDYLEIQPIGNNAFLVR 489

Query: 187  QRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +     D   R    +V +L      P+VAT +  FL+ ED     +LM         Q+
Sbjct: 490  EGKVADDEGLRRLNLRVCELGEKLNKPVVATCDVHFLNPEDEVYRRILMTGQGFADADQQ 549

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                  P  Y +   EM+S F+ L   +A E  VE +RR S +++   PI          
Sbjct: 550  ------PPLYFRTTDEMLSEFAYLGAEKAYEVVVENSRRISELIEHFKPI---------- 593

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSG 355
                   +EL    + G E ++   A  +          +    RL +EL+ I    F+ 
Sbjct: 594  ------PDELYAPKIPGAEEQIRSMAYQRAIELYGDPLPEIVASRLKYELDSIINNGFAV 647

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------- 399
             +LI    ++ +  +   VG  RGS   S  A    IT+++PL                 
Sbjct: 648  LYLIAHKLVKKSLDDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHWRCPACKHSEFITD 706

Query: 400  -------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                       + F  F+      +PD D++F  + +    +Y 
Sbjct: 707  GSYGSGFDLPDKHCPQCQTLMQKDGHDIPFAVFMGFHGDKVPDIDLNFSGEYQPIAHKYT 766

Query: 435  QNKYGHERVAQIITFGSLQAKAA-------LRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +  +G + V +  T  ++  K A         D G A++  Y     + KL+        
Sbjct: 767  EELFGRDNVFRAGTIATIADKTAYGFVKNYFADKGYAVRNAY-----INKLVSG------ 815

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPM 545
                                            G+ R    H  GI++  R +      P+
Sbjct: 816  ------------------------------CTGVKRTTGQHPGGIMVVPRDMDVHHFTPI 845

Query: 546  ---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                 D  S    T F+   I  + L+K D LG    T+++   D        +D   IP
Sbjct: 846  QYPADDKNSSTITTHFDYHSI-SSRLVKLDILGHDDPTVIKMLEDLTG-----IDAKQIP 899

Query: 603  FDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            FDD +T  L               TT GT GI +  +  +RQ LE  +P    +++  +S
Sbjct: 900  FDDAKTMSLFSSTEALGLTPEQLGTTVGTFGIPEFGTKFVRQMLEDTKPKTFSELVR-IS 958

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             +  G     V  NN ++  +K ++    +   +     +++Y  Q     Q+   + + 
Sbjct: 959  GFSHG---TDVWLNNAQDLIKKGIA---KLSEAISARDDIMVYLIQKGLEPQI--AFKIM 1010

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E   +R+  GK +K E D +  R          SK +     E   K   Y F K+HA A
Sbjct: 1011 EG--VRK--GKGVKPE-DVEYMR----------SKGVPEWYIESCQKIK-YMFPKAHAVA 1054

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIKKFCQDARQFN-- 813
            Y +++++ A+ K HYP+ F A+  T+   + +             KI +F Q     +  
Sbjct: 1055 YVMMAFRIAYCKVHYPLAFYASYFTVRATDFDADLIIQGEAALRSKINEFEQKGNNLSAK 1114

Query: 814  ----IQIMPPSVN---------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
                + IM  ++                +    F + DN +   + +++GVG T AR+I+
Sbjct: 1115 EKSQLTIMEMALEMYLRGYIFHPVDIYRSDAAKFLIVDNGLLPPIGSLQGVGDTAARNIV 1174

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +A  ++PF SL+D  +R    ++++ V+++L   G LD
Sbjct: 1175 QARKERPFSSLDDLRTRA---RVSKTVIDTLKAHGCLD 1209


>gi|213610033|ref|ZP_03369859.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 239

 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 126/247 (51%), Gaps = 13/247 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4   PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PI+G   ++    N  + ++       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64  PIVGADFNV---HNELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 114 PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172

Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR
Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248 -VTPDHY 253
             +P  Y
Sbjct: 233 NYSPQQY 239


>gi|530430|emb|CAA83754.1| DNA Polymerase III (alpha) [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 198

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/198 (39%), Positives = 118/198 (59%), Gaps = 7/198 (3%)

Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY-NNRKNGKEKIV--SIHP 676
           IFQLES GM   +   Q D IE I    +LYRPGP + I +Y  N+K  K KI+  S++ 
Sbjct: 4   IFQLESKGMTDLISKXQVDSIELISIASALYRPGPQEMIPIYLENKKTNKFKIIDKSVYE 63

Query: 677 LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
           ++ P    T G+I+YQEQVMQ+   ++ +S ++AD++RRAM KK  + M   K  FI+ A
Sbjct: 64  ILKP----TYGIIVYQEQVMQMLNKVANFSYAKADIIRRAMSKKNNKVMQSMKLEFINSA 119

Query: 737 SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
            KN  S   A  I+  + KF++YGFNKSH+ +Y+ ISY  A+ K H+  EF  + +   +
Sbjct: 120 IKNNFSYNKANLIWNWIEKFSNYGFNKSHSISYSYISYWLAYFKAHFTTEFYTSLLDQNI 179

Query: 797 DNVEKIKKFCQDARQFNI 814
            N  K +++ ++   + I
Sbjct: 180 GNEIKTQQYIKELYDYKI 197


>gi|32526639|dbj|BAC79179.1| putative DNA polymerase III, alpha chain [Streptomyces
           violaceoruber]
          Length = 382

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 180/383 (46%), Gaps = 49/383 (12%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-IQ 68
           SFVHL  H+ YS+L+GA  L  +  ++     PA+A++D  N+F A EF Q A   G ++
Sbjct: 17  SFVHLHNHTEYSMLDGAQKLKPMFAEVDRQGMPAVAMSDHGNMFGAYEFQQVAKGFGSVK 76

Query: 69  PIIGCQLDI-----------------------DMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           PIIG +  +                       D + +  ++  G+        + +  + 
Sbjct: 77  PIIGIEAYVAPSSRRNRRQEFWGPGGQRAVSDDGEGSKDVSGGGR-----FTHMTMWATG 131

Query: 106 AEGYQRLIELVSRMYLLDQ---GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
           A+G + L  + +      Q   GK   R+ +  + E   EG++  TG  SG +      N
Sbjct: 132 AQGLRNLFYMSTEASYTGQFPAGKP--RMDMELIAEH-AEGVVATTGCPSGAVQTRLRLN 188

Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220
               A +    ++ +FG +  ++ L  H    +R     +++LA    LPL+ATN++ ++
Sbjct: 189 QYDEARQVASAYQDIFGKENYFLELMDHGLSIERDVREGLLRLARELSLPLLATNDAHYI 248

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            E   +AHD L+ +      + + R R +   +YLK  +EM ++F++LPEA +NT+ IA 
Sbjct: 249 HESQADAHDNLLCIGVGKNKADEKRFRFSGSGYYLKTAAEMRALFAELPEACDNTLLIAE 308

Query: 280 RCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
           R     +V   +  +P+F +    + Q   E+ LR + + GL +R             + 
Sbjct: 309 RVGSYDEVFDNVDEMPQFPDVPDGETQ---ESWLRKEVLTGLAMRYGDPV------PTEV 359

Query: 338 RQRLDFELNVIARMKFSGYFLIV 360
            +R + E++VI  M FS YFL+V
Sbjct: 360 LERFETEMSVIGPMGFSSYFLVV 382


>gi|218659790|ref|ZP_03515720.1| DNA polymerase III subunit alpha [Rhizobium etli IE4771]
          Length = 248

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 92/150 (61%), Gaps = 2/150 (1%)

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            ++FAGA DCFG  R QL   LD I  YAQ  ++N+ +   +IF     +  +KI L  FS
Sbjct: 1    MIFAGAFDCFGTDRAQLSAGLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKIALPPFS 60

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVV 1002
               +S R   E +VLGFY + HPLD Y  IL+KM ++ + E  A I+   +N RLA  V+
Sbjct: 61   PWLASERLLKEFQVLGFYLTAHPLDSYSNILQKMRVQTFAEFSAAIKQGASNARLAGTVI 120

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            SKQ++KTR G+++G + FS+ + ++EA  F
Sbjct: 121  SKQERKTRTGNKMGIIVFSDSSGQFEAVLF 150


>gi|75758946|ref|ZP_00739056.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228904735|ref|ZP_04068789.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
 gi|74493547|gb|EAO56653.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228854749|gb|EEM99353.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
          Length = 511

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 170/325 (52%), Gaps = 25/325 (7%)

Query: 94  PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG 153
           P +  ++++    EGY+ LI+L + +  ++      R     +++ G +G+I  +    G
Sbjct: 176 PRIAHLLMIAKNNEGYKNLIKLTT-IGSVEGFYGKPRFDYGDIKKYG-KGIIATSSCLGG 233

Query: 154 PIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHEL--PL 211
            I +       +VA+  +  +KK F D  Y+ +Q     ++   + ++ + ++ EL  PL
Sbjct: 234 TIPQLIRRGKFRVAKNHIKFYKKCF-DEFYLEIQPSTMQEQILVNNIL-IEWSKELDVPL 291

Query: 212 VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY----LKNRSEMVSIFSDL 267
           VAT+++  L  ED   H  +     +++   KD      D Y      +  EM+++   +
Sbjct: 292 VATSDAHMLRPEDRPVHKAI-----TSINKGKDEDESDIDVYEHCVFYSAEEMLAM--GM 344

Query: 268 PE-ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           PE AL N   IA  C   L   +   P F  +  DD   + ++ L + +  GL  ++A+G
Sbjct: 345 PEEALINAYNIAHSCHVDLDESSIKYPEF--EVPDDF--DFDSYLAHISNKGLMEKIAEG 400

Query: 327 A-IAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
             + K ++   + Y++RLD+EL VI     S Y LIV D+I +AK+N+I VGPGRGS AG
Sbjct: 401 NFVGKNFYKMYRKYKRRLDYELEVIKNKNISAYMLIVWDYINFAKRNDILVGPGRGSAAG 460

Query: 384 SVTAYALTITDIDPLRFSLLFERFL 408
           S+ AY   IT++DP+R++LLFER L
Sbjct: 461 SLVAYVTGITNLDPIRYNLLFERKL 485


>gi|299145849|ref|ZP_07038917.1| putative DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23]
 gi|298516340|gb|EFI40221.1| putative DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23]
          Length = 569

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 196/447 (43%), Gaps = 63/447 (14%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           L  +  FV+L +H+ + LL G+ SL + + K     Q A+ I D N + + L   ++  A
Sbjct: 102 LNHAQEFVNLGIHTPFELLNGSFSLTDWIKKAKYLGQSALGICDYNTMAATLILQKECEA 161

Query: 65  AGIQPIIGCQL---DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
           AGIQ + G  L   D   + + K+  Q +     +  I   ++  +   ++I+L     L
Sbjct: 162 AGIQWVFGYSLTFTDGIEKIDAKIYCQSQEGLQNLLRIQKCIN-VDSENKIIDLQD---L 217

Query: 122 LDQGKQSV----RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
           L  G  ++    +    WL+EIG              +DR F        +  L  FK  
Sbjct: 218 LKHGTGNIIVFSKYASFWLKEIGNN------------LDRFFDSFDDCFYQLDLSEFK-- 263

Query: 178 FGDRLYVN-LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
             +R+ +  L   + Y  Y       +  T +LP V   +  +L ++D +   +L  +A 
Sbjct: 264 -AERIDIKVLDATKCYFDY-------IYDTGDLPPVLICDCYYLDKDDAKNKIILNKIAE 315

Query: 237 STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------------ALENTVEIARRCSFI 284
                Q D      D Y K+  E  +  S L +            A ENTV+IA      
Sbjct: 316 GAAHEQSD------DQYFKDLDEHWTTMSGLFDEHKWDIEDIFNWACENTVKIAEGAKAR 369

Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG---AIAKGYHAQDYRQRL 341
            ++    +P++      D+   E+++  N+    L++ L  G    + KG     YR++L
Sbjct: 370 YEIERNFMPQY------DMADNEKSKYANRHEMFLDL-LEDGFNKLVPKG-KEDIYRKQL 421

Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
           D+E+ V+       Y L+  D + WA+KN I VG GRGS  G +  Y L IT IDP+++ 
Sbjct: 422 DYEVYVLESTNNVDYMLVQYDTVNWARKNGILVGCGRGSAGGCLVLYLLGITLIDPIKYD 481

Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRD 428
           LLFERFL P+R  +   D+    D  D
Sbjct: 482 LLFERFLLPERAGLYPSDVTIIGDDVD 508


>gi|265763455|ref|ZP_06092023.1| predicted protein [Bacteroides sp. 2_1_16]
 gi|263256063|gb|EEZ27409.1| predicted protein [Bacteroides sp. 2_1_16]
          Length = 569

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 196/447 (43%), Gaps = 63/447 (14%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           L  +  FV+L +H+ + LL G+ SL + + K     Q A+ I D N + + L   ++  A
Sbjct: 102 LNHAQEFVNLGIHTPFELLNGSFSLTDWIKKAKYLGQSALGICDYNTMAATLILQKECEA 161

Query: 65  AGIQPIIGCQL---DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
           AGIQ + G  L   D   + + K+  Q +     +  I   ++  +   ++I+L     L
Sbjct: 162 AGIQWVFGYSLTFTDGIEKIDAKIYCQSQEGLQNLLRIQKCIN-VDSENKIIDLQD---L 217

Query: 122 LDQGKQSV----RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
           L  G  ++    +    WL+EIG              +DR F        +  L  FK  
Sbjct: 218 LKHGAGNIIVFSKYASFWLKEIGNN------------LDRFFDSFDDCFYQLDLSEFK-- 263

Query: 178 FGDRLYVN-LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
             +R+ +  L   + Y  Y       +  T +LP V   +  +L ++D +   +L  +A 
Sbjct: 264 -AERIDIKVLDATKCYFDY-------IYDTGDLPPVLICDCYYLDKDDAKNKIILNKIAE 315

Query: 237 STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------------ALENTVEIARRCSFI 284
                Q D      D Y K+  E  +  S L +            A ENTV+IA      
Sbjct: 316 GAAHEQSD------DQYFKDLDEHWTTMSGLFDEHKWDIEDIFNWACENTVKIAEGAKAR 369

Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG---AIAKGYHAQDYRQRL 341
            ++    +P++      D+   E+++  N+    L++ L  G    + KG     YR++L
Sbjct: 370 YEIERNFMPQY------DMADNEKSKYANRHEMFLDL-LEDGFNKLVPKG-KEDIYRKQL 421

Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
           D+E+ V+       Y L+  D + WA+KN I VG GRGS  G +  Y L IT IDP+++ 
Sbjct: 422 DYEIYVLESTNNVDYMLVQYDTVNWARKNGILVGCGRGSAGGCLVLYLLGITLIDPIKYD 481

Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRD 428
           LLFERFL P+R  +   D+    D  D
Sbjct: 482 LLFERFLLPERAGLYPSDVTIIGDDVD 508


>gi|167947394|ref|ZP_02534468.1| hypothetical protein Epers_12972 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 120

 Score =  120 bits (302), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 55/104 (52%), Positives = 73/104 (70%)

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           +LRRAMGKK  EEM KQ+  F  GA  NGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 1   MLRRAMGKKKPEEMAKQRAVFKEGAENNGIDAELAMKIFDLVEKFAGYGFNKSHSAAYAL 60

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
           +SYQT W+K HYP  F+AA  + +MDN +K+     ++R+   Q
Sbjct: 61  VSYQTMWLKAHYPAAFMAAVCSADMDNTDKVVPLIDESRRMPAQ 104


>gi|28557086|dbj|BAC57546.1| DNA polymerase III alpha-chain [Clostridium novyi]
          Length = 245

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 135/250 (54%), Gaps = 10/250 (4%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           K   FVHL  H+ YSLL+G+  +  ++++       ++AITD   +F  ++F +KA  AG
Sbjct: 2   KGQKFVHLHTHTEYSLLDGSGKIGGLIERAKELGMDSLAITDHGTMFGCVDFYKKAKEAG 61

Query: 67  IQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           I+PIIG ++ +  +  N+K  ++          +VLLV    GY+ L+++VS+   +D  
Sbjct: 62  IKPIIGSEIYVASKSMNIKRNDRENKNH----HLVLLVKNEIGYKNLMKIVSKA-AIDGF 116

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
               R+   +L+E  +EGLI L+   +G +       + + A +  L +K +F D  Y+ 
Sbjct: 117 YYKPRVDHEYLRE-HSEGLIALSACLAGEVSYNLLNGTKEKAREVALFYKDIFKDGFYLE 175

Query: 186 LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
           LQ H G D+       +++L+   ++PLVATN+  ++ +ED ++HDVL+ +     +   
Sbjct: 176 LQYH-GIDKQLRVNEMLIELSRELDIPLVATNDVHYIKKEDAKSHDVLLCIQTGKTLDDT 234

Query: 244 DRPRVTPDHY 253
           DR R  P ++
Sbjct: 235 DRMRYEPQNF 244


>gi|36938266|gb|AAQ86809.1| DnaE precursor [Thermosynechococcus vulcanus]
          Length = 200

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 97/161 (60%), Gaps = 8/161 (4%)

Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
           FNKSH+ AY  ++YQTA++K ++PVE++AA +T    + +K++++        I+++PP 
Sbjct: 37  FNKSHSTAYGYVTYQTAFLKANFPVEYMAALLTANSGDQDKVQRYIATCLSMGIEVLPPD 96

Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRV-----DS 874
           VN   +DF    N+I + L+A++ VG      I++A S    F SL DFC RV     DS
Sbjct: 97  VNRSDIDFTPVGNKILFGLSAVRNVGQGMIEVILQARSEGGAFQSLGDFCERVPRVAGDS 156

Query: 875 KKLNRRVLESLVFAGALDCFGYSR--MQLLQSLDNIQKYAQ 913
           + LNRR LESL+  GA+D     R   QLLQ L  + ++AQ
Sbjct: 157 RILNRRALESLIACGAMDSLHPQRNCNQLLQDLPLVLEWAQ 197


>gi|257487763|ref|ZP_05641804.1| error-prone DNA polymerase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 207

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 113/195 (57%), Gaps = 2/195 (1%)

Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
           P + R+L ++ +L G  RH S H  G VI + PL  LVP+     +D  + Q++   ++ 
Sbjct: 13  PILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLVPVENAAMADRTIIQWDKDDLDL 72

Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            GL+K D L L  L+ L+++ D +   RG +  L+ +P DD +TY +++   T+G+FQ+E
Sbjct: 73  VGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADLPGDDRKTYEMISRADTIGVFQIE 132

Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN-RKNGKEKIVSIHPLIDPMLK 683
           S      L  ++P+   D++  V++ RPGPI   +V+   R+  KE+ ++  P +  + +
Sbjct: 133 SRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRRNKEEAITYPPKLKSVFE 192

Query: 684 ETQGVIIYQEQVMQI 698
            T GV ++QEQVM++
Sbjct: 193 RTLGVPLFQEQVMEV 207


>gi|297580887|ref|ZP_06942812.1| DNA polymerase III [Vibrio cholerae RC385]
 gi|297534713|gb|EFH73549.1| DNA polymerase III [Vibrio cholerae RC385]
          Length = 353

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 11/228 (4%)

Query: 812  FNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFC 869
              + ++PP +N+    F V DN  I Y + AIKGVG      I+EA +    F  L DFC
Sbjct: 1    MGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFC 60

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            +R+D KK+N+RV+E L+ AGALD  G  R  ++ S+D+  + A    +       ++F  
Sbjct: 61   ARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF-- 118

Query: 930  EKGTFSD---KITLEKFSVEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
              G  +D   ++  +   V      VR E E+  LG Y +GHP+D Y   L K       
Sbjct: 119  --GVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLN 176

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            E+  T R  ++ +A +V++ +   T++G+RIG +T  + +   E   +
Sbjct: 177  EAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLY 224


>gi|257487764|ref|ZP_05641805.1| error-prone DNA polymerase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 226

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 106/206 (51%), Gaps = 11/206 (5%)

Query: 271 LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
           L  +V IARRC+F L+      P     E     +   + LR     G   R   G    
Sbjct: 19  LAESVRIARRCTFDLKQLKYEYP----HELVPKGQTPTSWLRELTERGARKRWPNGLTPA 74

Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                  R +++ EL +I   KF  YFL V D +++A+  +I +  GRGS A S   YAL
Sbjct: 75  T------RAQVEKELALITEKKFDSYFLTVHDIVEFARSQHI-LCQGRGSAANSAVCYAL 127

Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
            IT+++P + +LLFERF++ +R   PD D+DF  DRR+EVI+Y+  +YG  R A      
Sbjct: 128 GITELNPEKSNLLFERFISKERNEPPDIDVDFEHDRREEVIQYIFRRYGRGRAALTAVAS 187

Query: 451 SLQAKAALRDVGRALQMPYSQVDRLC 476
           +     A+RDV + L +P  Q++ L 
Sbjct: 188 TYHGSGAVRDVAKVLGLPPDQINALA 213


>gi|254716292|ref|ZP_05178103.1| error-prone DNA polymerase [Brucella ceti M13/05/1]
          Length = 471

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 171/393 (43%), Gaps = 42/393 (10%)

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKE--KIVSIHPLIDP------MLKETQGVIIY 691
            D++  V++ RPGPI  D +  Y  R++G+E   + S  P   P      +L +T+GV ++
Sbjct: 2    DLVIEVAIVRPGPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLF 61

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIF 750
            QEQ M+IA   + ++  EA+ LRRAM    K   +   +++ I G    G  +T A N F
Sbjct: 62   QEQAMRIAMEAAKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCF 121

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
              +  F +YGF +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DAR
Sbjct: 122  NQIKGFGEYGFPESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAR 181

Query: 811  QFNIQIMPPSVN----------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
            +  + ++P  VN          TP V        +      I G        ++ A   +
Sbjct: 182  EHGVTVLPVDVNFSQWDNILEETPDVHLA-----LRLGFRQIDGFSKRDT-ELLIADRQE 235

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            P+ ++ED   R+   +L+RR    L  A   D FG        SLD  ++ A W  +   
Sbjct: 236  PYRTIEDMHRRL---RLDRRAFTLLADA---DAFG--------SLDIDRRAALWAVRRLP 281

Query: 921  NKHE-NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            N     +F     +   +    K     +S     +         GHPL   +  L   G
Sbjct: 282  NDETLPLFRAAAASELAQEPRTKLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEG 341

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            +           G  +++A +V  +Q+  + KG
Sbjct: 342  VSTCRAVQEGADGRRMKVAGVVTVRQRPGSAKG 374


>gi|222832232|gb|EEE70709.1| predicted protein [Populus trichocarpa]
          Length = 283

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 116/248 (46%), Gaps = 3/248 (1%)

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVG 846
            +AA MT EMDN +KI  F  +  +  + I+PP +NT    F V DN  I Y + AIKGVG
Sbjct: 1    MAAVMTSEMDNTDKIVSFYDECLRMGLTIVPPDINTGKHHFSVNDNGEIVYGIGAIKGVG 60

Query: 847  TTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+ A      F  L D C+RVD KK+NRR  E+L+ +GA D  G  R  L Q+L
Sbjct: 61   EVPINAIVSAREQGGIFKDLFDLCARVDLKKVNRRTFENLIKSGAFDKLGPHRAALAQNL 120

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR-FENEQRVLGFYFS 964
            ++  K +    K+      ++F     +  D  T    +   S  +  + E+  LG Y S
Sbjct: 121  EDALKASDQHAKDEAIGQVDMFGVLTSSHEDVETAYAHTPRWSEKQILDGERETLGLYLS 180

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+  Y   L         E     RG    +  ++V+ +   T+KG+R+G  T  + +
Sbjct: 181  SHPITRYLKELSHYSSTRLNELSPNTRGKISTVCGLIVALRFAVTKKGNRLGIATLDDRS 240

Query: 1025 KEYEANFF 1032
               +   F
Sbjct: 241  GLLDITLF 248


>gi|167630340|ref|YP_001680839.1| DNA polymerase iii, alpha subunit, gram-positive type [Heliobacterium
            modesticaldum Ice1]
 gi|167593080|gb|ABZ84828.1| DNA polymerase iii, alpha subunit, gram-positive type [Heliobacterium
            modesticaldum Ice1]
          Length = 1245

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 226/1005 (22%), Positives = 391/1005 (38%), Gaps = 236/1005 (23%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITD---TNNLFSALEFSQK---ACAA 65
            V L  H+  S ++G +S  +++ + A    PAIAITD         A E S+K       
Sbjct: 342  VELHAHTKMSSMDGLVSAKDLVARAAYWGHPAIAITDHGVVQAFPEAFEASRKLKIKVIY 401

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G++  +  ++     + LK  +           I++LV    G + L +L+++ + L+  
Sbjct: 402  GVEGYLVEEMPAPNGEKLKSWH-----------IIILVKNMTGLKNLYKLITKSH-LEYF 449

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-----KLFGD 180
            ++  RI    L+E   EGLI+ +   +G +  A    +S    KR+  F      +  G+
Sbjct: 450  ERRPRIPRKILEE-HREGLILGSACEAGELFSAMRKGASDDDLKRIAAFYDYVEIQPIGN 508

Query: 181  RLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             L++  +     +   R    + +++A     P+VAT +  FL   D     +LM  A  
Sbjct: 509  NLFLYKKGEVPSEEALRDLNRRALRIADEVGKPIVATGDVHFLEPRDECYRRILM--AGK 566

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                  D+  +    YL+   EM++ F  L EA       A+RC           PR I 
Sbjct: 567  GFADADDQAPL----YLRTTDEMLAEFHYLGEA------DAKRCVI-------DNPRLIA 609

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY--------RQRLDFELNVIA 349
               ++I K   +E     + G E ++ +  + +G  A+ Y        R+R+D EL+ I 
Sbjct: 610  DMVEEI-KPIPDEFFPPIIDGAEDQIRE--MTEGMAAELYGDPLPEVVRKRVDKELHSII 666

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------- 398
               FS  +LI    ++ +  +   VG  RGS   S+ A    IT+++PL           
Sbjct: 667  SNGFSVLYLIAHKLVKKSNDDGYLVG-SRGSVGSSLVATFTGITEVNPLPPHYRCGHCKH 725

Query: 399  ------------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                                             + FE FL  +   +PD D++F  + + 
Sbjct: 726  SEFIMDGSIGCGADLPDKNCPRCGQLLIKDGHDIPFETFLGFEGDKVPDIDLNFSGEYQP 785

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
               ++ +  +G + V +  T  ++  + A   V   L           K IP        
Sbjct: 786  RAHKFTEELFGKDYVFRAGTIATIAERTAYGFVKNYLDE---------KKIP-------- 828

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY 546
                      R A L+     RL+       G+ R    H  G+++  R   +    P+ 
Sbjct: 829  ---------VRSAELS-----RLV---SGCTGVKRTTGQHPGGLMVVPRYGDIHDFTPLQ 871

Query: 547  R---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            R   D +S+   T F+   I  + L+K D LG    T+++   D        V+   IP 
Sbjct: 872  RPADDTKSETITTHFDYHSI-SSRLVKLDILGHDDPTVIKMLEDLTG-----VNAKGIPL 925

Query: 604  DDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            DD +T  L               +  GT GI +  +  +RQ LE  +P    D++  +S 
Sbjct: 926  DDAKTMSLFCSTEALGVTPEQIRSNTGTYGIPEFGTKFVRQMLEDTKPKTFSDLVR-ISG 984

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            +  G     V  NN ++          LI   + +T   I  ++ +M I  +  G    +
Sbjct: 985  FSHG---TDVWLNNAQD----------LIKSGICKTGEAISTRDDIM-IYLMYRGLPPKK 1030

Query: 710  A----DVLRRAMGKKIKEEM----DKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            A    + +R+  G K  +E     +K  E +I    K                    Y F
Sbjct: 1031 AFSIMEGVRKGKGVKADDEQLMRENKVPEWYIESCKK------------------IKYMF 1072

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD----------------NVEKIKKF 805
             K+HA AY  ++++ AW K +YP  F A+  T+  D                 +E+I++ 
Sbjct: 1073 PKAHAVAYVTMAFRIAWFKVYYPEAFYASFFTVRADEFDADLICQGSAHVRRTIEEIERK 1132

Query: 806  CQD--ARQFNIQ-------------IMPPSVN---TPCVDFKVGDNRIYYSLAAIKGVGT 847
              +  A++ N+Q             I    VN   +    F +    +   + ++ GVG 
Sbjct: 1133 GNEATAKEKNLQTILELALEMYERGIHLQRVNLDRSHATKFIIEPEGLLPPIGSLPGVGA 1192

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            T A++IM A  + PF S+ED   RV S ++++ V+E+L   G LD
Sbjct: 1193 TAAQNIMAAREEGPFSSIEDL--RVRS-RVSKTVIEALQKHGTLD 1234


>gi|297617183|ref|YP_003702342.1| DNA polymerase III subunit alpha [Syntrophothermus lipocalidus DSM
            12680]
 gi|297145020|gb|ADI01777.1| DNA polymerase III, alpha subunit [Syntrophothermus lipocalidus DSM
            12680]
          Length = 1218

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 209/996 (20%), Positives = 385/996 (38%), Gaps = 225/996 (22%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S L+G + + ++L+++A     A+AITD   + +  E    A   GI+ + 
Sbjct: 319  VELHLHTVMSTLDGVVKIKDLLERVAEWGHKAVAITDHGAVQAFPEAYDYAKLKGIKLVY 378

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  ++  + D+L+              I++LV   EG + L  LVS+ + L+   ++ RI
Sbjct: 379  G--MEGYLVDDLRQKQ--------AYHIIILVRNREGLKNLYRLVSKSH-LEGFYRNPRI 427

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVN 185
                L E+  EGLI+ T   +G +   +  N S    +R+ +F      + L  +   V 
Sbjct: 428  LRKQLVEL-REGLILGTACEAGELITGYLQNKSDDELERIASFYDFLEIQPLMNNEFLVR 486

Query: 186  LQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              R   ++      RY    +V+L     LP++AT +  FL       H+V   +  +  
Sbjct: 487  EGRVSSFEDLIQMNRY----IVELGERLNLPVIATGDVHFLDPH----HEVFRRILQAN- 537

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
               +D     P  YL+   EM++ F+ L +     V +             I P  + + 
Sbjct: 538  KGYEDAEAQAP-LYLRTTGEMLAEFAYLGKEKAYQVVV-------------INPNRLVEG 583

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKF 353
             +D+Q   +      ++ G E  +   A  K Y        +  R+RL+ EL  I   KF
Sbjct: 584  VEDLQPVPDGNF-FPSIPGAEEEIKTLAWEKAYQMYSRPLPELVRERLERELAAIIDNKF 642

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--------------- 398
            S  +LI    ++ + ++   VG  RGS   S+ A+ + IT+++PL               
Sbjct: 643  SVLYLIAHKLVKRSNEDGYLVG-SRGSVGSSLVAFLIGITEVNPLVPHYRCPNCFYTEFV 701

Query: 399  --------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                                         + FE FL  +   +PD D++F  D +    +
Sbjct: 702  NDGSVECGVDLPDLTCPRCGQRLVRDGHDIPFETFLGFEGDKIPDIDLNFSGDYQPRAHQ 761

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YV+  +G E V +  T  +L   +A+      +   Y++ + L                 
Sbjct: 762  YVEEIFGSEHVFRAGTINTLAEASAI-----GMVKNYAEKNGL----------------- 799

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPM---YR 547
                  R+          +L +++ L G+ R    H  G+++   +R + +  P+     
Sbjct: 800  ----HLRKG--------EVLRLARGLAGVKRTTGQHPGGLMVVPRERDVHEFTPLNYPAN 847

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
               S +  T F+   I +  L+K D LG    T+++   D    R + + L     DD E
Sbjct: 848  KAESGIITTHFDYHSISER-LVKLDILGHDDPTMIKVLEDMTGYRALDISL-----DDRE 901

Query: 608  TYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            T  L               +  GT G+ +  +  +RQ LE  +P    +++ +  L    
Sbjct: 902  TMRLFSGVEPLGVTPEAIRSAVGTYGVPEFGTRFVRQMLEVTRPQTFGELVRISGLSH-- 959

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA--- 710
                 V  NN +           LI+      + VI  ++ +M    +  G    +A   
Sbjct: 960  --GTDVWLNNAQE----------LIENGTAPLKEVIATRDDIMTFL-IHKGMDKKQAFRI 1006

Query: 711  -DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             + +R+  G  ++EE+   +E  I     +   K               Y F ++HA AY
Sbjct: 1007 MENVRKGKG-LVREEVQAMQEYRIPAWYIDSCQKI-------------KYMFPRAHAVAY 1052

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDN----------------VEKIKKFCQDARQFN 813
             +++++ A+ K +YP EF AA  ++  ++                V +I+K   +A   +
Sbjct: 1053 VMMAFRIAYYKVYYPREFYAAFFSVRAEDFDAEVILGGYDKVRQRVVEIEKMNSNAAPKD 1112

Query: 814  IQIMP------------------PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
             +++P                    + +    F V    +    +A+ G+G   A  I+E
Sbjct: 1113 RKLLPVLEVALEMYARGFRFLPVDLLLSDATRFLVTKKGLLLPFSALPGLGEKAALSIIE 1172

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A     F S+ED   R     ++R V+++L   G L
Sbjct: 1173 ARKLGTFASIEDLQFRAG---VSRAVVDTLKRNGCL 1205


>gi|46143201|ref|ZP_00135688.2| COG0587: DNA polymerase III, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 131

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/125 (50%), Positives = 85/125 (68%), Gaps = 15/125 (12%)

Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIV---------SIHP 676
           M+  + G   DC EDIIALV+L+R GP+++ +V N  +RK+G E++          S+ P
Sbjct: 1   MKDLISGGGHDCFEDIIALVALFRTGPLESGMVQNFIDRKHGHEEVSYPDAQYQHESLKP 60

Query: 677 LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
           ++DP    T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM  Q+E F  GA
Sbjct: 61  ILDP----TYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEEMAAQREIFEKGA 116

Query: 737 SKNGI 741
            K G+
Sbjct: 117 IKQGV 121


>gi|330859614|emb|CBX69954.1| hypothetical protein YEW_DO15370 [Yersinia enterocolitica W22703]
          Length = 234

 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 119/240 (49%), Gaps = 12/240 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A +AG++
Sbjct: 4   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHSAGVK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PIIG    +          Q +     +  + +L    +GYQ L  L+S  Y    G   
Sbjct: 64  PIIGADFYV----------QSEILGDELAHLTVLARNNKGYQNLTLLISEAYQRGYGAAG 113

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I   WL +   EGLI+L+GG  G + +     +    E+ L  +++ F D  Y+ L R
Sbjct: 114 PIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHAQVEQCLEFYQEHFPDSYYLELIR 172

Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  +       V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP+
Sbjct: 173 TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 232


>gi|261218071|ref|ZP_05932352.1| error-prone DNA polymerase [Brucella ceti M13/05/1]
 gi|260923160|gb|EEX89728.1| error-prone DNA polymerase [Brucella ceti M13/05/1]
          Length = 468

 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 168/388 (43%), Gaps = 42/388 (10%)

Query: 647  VSLYRPGPI--DNIVVYNNRKNGKE--KIVSIHPLIDP------MLKETQGVIIYQEQVM 696
            V++ RPGPI  D +  Y  R++G+E   + S  P   P      +L +T+GV ++QEQ M
Sbjct: 4    VAIVRPGPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAM 63

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            +IA   + ++  EA+ LRRAM    K   +   +++ I G    G  +T A N F  +  
Sbjct: 64   RIAMEAAKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKG 123

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            F +YGF +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + 
Sbjct: 124  FGEYGFPESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVT 183

Query: 816  IMPPSVN----------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
            ++P  VN          TP V        +      I G        ++ A   +P+ ++
Sbjct: 184  VLPVDVNFSQWDNILEETPDVHLA-----LRLGFRQIDGFSKRDT-ELLIADRQEPYRTI 237

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE- 924
            ED   R+   +L+RR    L  A   D FG        SLD  ++ A W  +   N    
Sbjct: 238  EDMHRRL---RLDRRAFTLLADA---DAFG--------SLDIDRRAALWAVRRLPNDETL 283

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
             +F     +   +    K     +S     +         GHPL   +  L   G+    
Sbjct: 284  PLFRAAAASELAQEPRTKLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCR 343

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
                   G  +++A +V  +Q+  + KG
Sbjct: 344  AVQEGADGRRMKVAGVVTVRQRPGSAKG 371


>gi|219667072|ref|YP_002457507.1| DNA polymerase III subunit alpha [Desulfitobacterium hafniense DCB-2]
 gi|219537332|gb|ACL19071.1| DNA polymerase III, alpha subunit [Desulfitobacterium hafniense
            DCB-2]
          Length = 1447

 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 201/900 (22%), Positives = 332/900 (36%), Gaps = 193/900 (21%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++L     G + L +LVS  +L D   +  RI  S  ++  +EGLI+ +  S G + +A 
Sbjct: 620  IILAKDYTGLKNLYKLVSYSHL-DYFYKKPRILKSLYKKY-SEGLILGSACSEGELYQAI 677

Query: 160  FFNSSQVAEKR------LLTFKKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPL 211
                S+   +        L  + L  +   +  ++  G D   E   ++V L      P+
Sbjct: 678  LLGRSEEEIESIAEEYDYLEIQPLGNNDYLIRTEQVPGKDYLMEINRKIVALGEKLNKPV 737

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            VAT +  FL  ED     +L A        Q+      P  YLK   EM+  FS L E  
Sbjct: 738  VATGDVHFLDPEDEIYRRILEAGQGFKDADQQ------PPLYLKTTEEMLEEFSYLGEDK 791

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
               V +    + I  +  PI P   EK    I+  EE           E+   +     G
Sbjct: 792  AYEV-VVTNTNLIADLCEPISPISSEKATPHIEGCEETIK--------EIAFGKAHELYG 842

Query: 332  YHAQD-YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                D  +QRLD EL+ I +  FS  ++I    +  + ++   VG  RGS   SV AY  
Sbjct: 843  NPLPDIVQQRLDRELDSIIKNGFSVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSVAAYMT 901

Query: 391  TITDIDPL---------RFS-------------------------------LLFERFLNP 410
             IT+++ L         ++S                               + FE FL  
Sbjct: 902  GITEVNALPPHYRCPSCKYSDFSDHGPKIGFDLPDRECPVCGTQLDKDGIDIPFETFLGF 961

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +    PD D++F  + + +  +Y +  +G     +  T G++  K A   V +  +    
Sbjct: 962  NGDKEPDIDLNFSGEYQAKAHKYTEVIFGKGTTFKAGTIGTIADKTAFGYVRKYFE---- 1017

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
                                      + R A  A+     ++ IS+   G+ R +  H  
Sbjct: 1018 -------------------------EKNRTANKAE-----IIRISKGCTGIKRTSGQHPG 1047

Query: 531  GIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            GI++    R + +  P+     D  SD+  T F+   I++  L+K D LG    T+++  
Sbjct: 1048 GIIVVPKGREIFEFCPVQHPADDPNSDIITTHFDYHSIDQ-NLLKLDILGHDDPTVIR-- 1104

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQA 631
               + Q    VD   IP DD +T  L ++               GT GI +  +  +R  
Sbjct: 1105 ---MLQDITGVDPKTIPMDDKKTMSLFSSTEALGVTPEQINSKVGTFGIPEFGTRFVRGM 1161

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            L    P   ED+I +  L         V   N K+          LID         +  
Sbjct: 1162 LLDTLPKAFEDLICISGLSH----GTDVWLGNAKD----------LIDAGTVTLSEAVCT 1207

Query: 692  QEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++++M       L    +    +++R+  GK +KE    + E  +           +   
Sbjct: 1208 RDEIMTYLIRKGLPPNTAFKIMEIVRK--GKALKEPKWPEYETLMR-------EHDVPEW 1258

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD---------NV 799
              +   K   Y F K+HAAAY +++++ AW K H P+ + AA  T+              
Sbjct: 1259 YIDSCRKIK-YMFPKAHAAAYVMMAFRIAWFKVHIPLAYYAAYFTIRAKAFDAEFMIFGK 1317

Query: 800  EKIKKFCQDARQFNIQIMPPSVN-------------------------TPCVDFKVGDNR 834
            EK+K   ++      Q  P   +                         +    F+V  N 
Sbjct: 1318 EKVKAKMKEIEALGNQAAPKDKDMYDDLEIVLEMYERGFSFLPIDIYASHATKFQVEGNA 1377

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +   L +I G+GT  A  +  A+ +KPF+SLED   R    K+    +E L      DC 
Sbjct: 1378 LRPPLNSISGMGTIAAEGLYNAAQEKPFNSLEDVKKR---GKIGNSTMELL---SKFDCL 1431


>gi|291529693|emb|CBK95279.1| DNA polymerase III, alpha subunit [Eubacterium rectale M104/1]
          Length = 572

 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 93/270 (34%), Positives = 135/270 (50%), Gaps = 51/270 (18%)

Query: 172 LTFKKLFG-DRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
           L+  K+FG D  +  +Q H G D  +E   ++ +LA    + LVATN+       D E  
Sbjct: 312 LSLIKIFGHDNFFAEVQYH-GIDLEKEIYPKIAELARELNIKLVATNDVHMAERSDLEKR 370

Query: 229 DVLMAVAHSTVVSQKDRPRVTP-----DHYLKNRSEMVSIFSD-LPE-----ALENTVEI 277
            +L        VSQK+     P     + Y K   E  ++ S+ LPE     A+ N   I
Sbjct: 371 TLLRNFGK---VSQKEPKWSAPIQGDSELYYKTGDEKAAMLSEILPEDMVNEAMNNIELI 427

Query: 278 ARRCSFILQVHAPILPRF------IEKECDDIQKE-EENELRNKAVAGLEVRLAQGAIAK 330
           A +C+  L  +A   P F      + K C+D  KE    +L  K +A             
Sbjct: 428 ADQCNLELS-NAKHYPHFDNAKELLRKMCEDGIKEFYPGDLWTKELA------------- 473

Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK---KNNIPVGPGRGSGAGSVTA 387
                    R+++EL  I +M F+ YF  VADFIQ+AK   +N++ +GPGRGSGAGS+  
Sbjct: 474 --------DRMEYELETINKMGFNDYFCEVADFIQYAKAHGENSVEIGPGRGSGAGSLVC 525

Query: 388 YALTITD-IDPLRFSLLFERFLNPDRMSMP 416
               IT+ +DP+ ++LLFERFLNP+R+SMP
Sbjct: 526 RLCKITEGLDPIEYNLLFERFLNPERVSMP 555



 Score = 45.4 bits (106), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 10/109 (9%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H+  SL +GA++    +DK      PAIAITD    ++ L+F     +  I+PI+
Sbjct: 6   IELHAHTDASLSDGAMTYKEYVDKAIEYGAPAIAITDHGGAWNWLDFFNYCKSKNIKPIL 65

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVS 117
           G +  + +Q  L       +P  TV     I+LL     G+Q +   +S
Sbjct: 66  GTEGYVGIQIPL-------SPSKTVSKRMHILLLAKDYLGFQAISRYIS 107


>gi|324017849|gb|EGB87068.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            117-3]
          Length = 358

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 115/234 (49%), Gaps = 20/234 (8%)

Query: 811  QFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDF 868
            +  ++I+PP +N+    F V D+  I Y + AIKGVG      I+EA +    F  L D 
Sbjct: 4    RMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDL 63

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
            C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A    K       ++F 
Sbjct: 64   CARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF- 122

Query: 929  HEKGTFSDKITLEKFSVENS---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKM 978
               G  ++    E   +E S          V  + E+  LG Y +GHP++ Y K I R +
Sbjct: 123  ---GVLAE----EPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYV 175

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 176  GGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 229


>gi|114566429|ref|YP_753583.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei str.
            Goettingen]
 gi|114337364|gb|ABI68212.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei str.
            Goettingen]
          Length = 1212

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 208/989 (21%), Positives = 386/989 (39%), Gaps = 204/989 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  HS  S ++G   ++ ++ + A  Q PAIAITD  ++ +  E  Q A    I+ I 
Sbjct: 313  IELHAHSKMSAMDGLTEVSMLVKRAAEWQHPAIAITDHGSIQAFPEAYQAAKKYKIKVIY 372

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +  +D      + + P+     IVLL     G + L  LVS  Y +D   +  +I
Sbjct: 373  GVEAYLVEED------KKERPY----HIVLLALNQNGLKNLYHLVSISY-MDYFYRYPKI 421

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVN 185
                L +   EGL++ +   +G + +A    + +   + +  F      + L  +   V 
Sbjct: 422  PRQQLIK-KREGLLLGSACEAGELFQAMVRGAKEKEIEEIAGFYDYLEIQPLDNNDFLVK 480

Query: 186  LQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                +  +  +E   ++++L    + P+VAT +  FL       H++   +  +     +
Sbjct: 481  EGSVKSREELQEINRRIIRLGQKLQKPVVATGDVHFLDPH----HEIFRRIIQAG-QGYE 535

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIE 297
            D     P  Y ++  EM++    L E       ++N   IA     I  V     P  IE
Sbjct: 536  DAESQAP-LYFRSTDEMLAEMDYLSEEEARKVVIDNPALIAEMIEDIRPVPEGFYPPKIE 594

Query: 298  KECDDIQKEEENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
               +++ +   +  +  ++ G E+  + +  I K             ELN I    FS  
Sbjct: 595  SAAEEVTRISWD--KAHSLYGDELPPIVESRIMK-------------ELNSITHHGFSVL 639

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFS------ 401
            +LI    ++ + ++   VG  RGS   S+ A+   IT+++PL         RFS      
Sbjct: 640  YLIAHKLVEKSNQDGYIVG-SRGSVGSSLVAFLTGITEVNPLAPHYLCPFCRFSDFVVDG 698

Query: 402  --------------------------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                      + FE FL  +   +PD D++F  D +    +YV+
Sbjct: 699  SANCGADLPERSCPDCGGKMHQDGFDIPFETFLGFEGDKVPDIDLNFSGDYQSRAHQYVE 758

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G E V +  T  ++  K A   V + ++    Q+D                      
Sbjct: 759  ELFGQENVYRAGTISTIAQKTAYGFVKKYVEN--KQID---------------------- 794

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVR 550
                   L++  V+RL+   + + G+ R    H  G+++   DR + +  P+     +  
Sbjct: 795  -------LSNAEVNRLV---KGITGVRRTTGQHPGGLIVVPQDRDILEFTPLQHPADNKD 844

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL---------SLI 601
            S +  T F    I +  L+K D LG    T+L++  D   ++   + L         S +
Sbjct: 845  SGVITTHFEYHAIGEQ-LVKLDILGHDDPTVLKELEDLTGRKAFSIKLNEKETMKLFSGV 903

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
                 E   +L+T GT GI +  +  +RQ LE  +P    +++ +  L         V  
Sbjct: 904  EPLGLEAADILSTVGTYGIPEFGTRFVRQMLEATRPTTFSELVRISGLSH----GTNVWL 959

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            NN +N          LI         VI  ++ +M        Y + +   L +    KI
Sbjct: 960  NNAQN----------LIKNGTASLSEVICTRDDIM-------SYLIQKG--LDKKQAFKI 1000

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E + ++     SG  +    + +     +   K  +Y F K+HA AY  ++++ A+ K 
Sbjct: 1001 MENV-RKGNGLNSGECELMAGQNVPSWYIDSCQKI-EYMFPKAHAVAYVTMAFRIAYFKV 1058

Query: 782  HYPVEFLAASMTLEMDN----------------VEKIKKFCQDARQFNIQIMP------- 818
            ++P++F A+  ++  ++                +++I+K    A Q + +++P       
Sbjct: 1059 YHPLQFYASFFSIRAEDFDSQTILAGYEALKKRIQEIEKAGLSASQKDKKLLPVFEVAME 1118

Query: 819  -----------PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
                           +    F V DN +    +A+  VG   A+ I+E+     F S+ED
Sbjct: 1119 MYARGFTFRPVDIYKSDASKFLVVDNALLLPFSALPNVGAAAAQGIIESREGGSFISVED 1178

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            F  R    +LN+  +E L      DCF +
Sbjct: 1179 FQQR---SRLNKTAMEVL---RNFDCFNH 1201


>gi|89897057|ref|YP_520544.1| hypothetical protein DSY4311 [Desulfitobacterium hafniense Y51]
 gi|89336505|dbj|BAE86100.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1447

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 200/900 (22%), Positives = 332/900 (36%), Gaps = 193/900 (21%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++L     G + L +LVS  +L D   +  RI  S  ++  +EGLI+ +  S G + +A 
Sbjct: 620  IILAKDYTGLKNLYKLVSYSHL-DYFYKKPRILKSLYKKY-SEGLILGSACSEGELYQAI 677

Query: 160  FFNSSQVAEKR------LLTFKKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPL 211
                S+   +        L  + L  +   +  ++  G D   E   ++V L      P+
Sbjct: 678  LLGRSEEEIESIAEEYDYLEIQPLGNNDYLIRTEQVPGKDYLMEINRKIVALGEKLNKPV 737

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            VAT +  FL  ED     +L A        Q+      P  YLK   EM+  F+ L E  
Sbjct: 738  VATGDVHFLDPEDEIYRRILEAGQGFKDADQQ------PPLYLKTTEEMLEEFAYLGEDK 791

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
               V +    + I  +  PI P   EK    I+  EE           E+   +     G
Sbjct: 792  AYEV-VVTNTNLIADLCEPISPISSEKATPHIEGCEETIK--------EIAFGKAHELYG 842

Query: 332  YHAQD-YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                D  +QRLD EL+ I +  FS  ++I    +  + ++   VG  RGS   SV AY  
Sbjct: 843  NPLPDIVQQRLDRELDSIIKNGFSVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSVAAYMT 901

Query: 391  TITDIDPL---------RFS-------------------------------LLFERFLNP 410
             IT+++ L         ++S                               + FE FL  
Sbjct: 902  GITEVNALPPHYRCPSCKYSDFSDHGPKIGFDLPDRECPVCGTQLDKDGIDIPFETFLGF 961

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +    PD D++F  + + +  +Y +  +G     +  T G++  K A   V +  +    
Sbjct: 962  NGDKEPDIDLNFSGEYQAKAHKYTEVIFGKGTTFKAGTIGTIADKTAFGYVRKYFE---- 1017

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
                                      + R A  A+     ++ IS+   G+ R +  H  
Sbjct: 1018 -------------------------EKNRTANKAE-----IIRISKGCTGIKRTSGQHPG 1047

Query: 531  GIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            GI++    R + +  P+     D  SD+  T F+   I++  L+K D LG    T+++  
Sbjct: 1048 GIIVVPKGREIFEFCPVQHPADDPNSDIITTHFDYHSIDQ-NLLKLDILGHDDPTVIR-- 1104

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQA 631
               + Q    VD   IP DD +T  L ++               GT GI +  +  +R  
Sbjct: 1105 ---MLQDITGVDPKTIPMDDKKTMSLFSSTEALGVTPEQINSKVGTFGIPEFGTRFVRGM 1161

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            L    P   ED+I +  L         V   N K+          LID         +  
Sbjct: 1162 LLDTLPKAFEDLICISGLSH----GTDVWLGNAKD----------LIDAGTVTLSEAVCT 1207

Query: 692  QEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++++M       L    +    +++R+  GK +KE    + E  +           +   
Sbjct: 1208 RDEIMTYLIRKGLPPNTAFKIMEIVRK--GKALKEPKWPEYETLMR-------EHDVPEW 1258

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD---------NV 799
              +   K   Y F K+HAAAY +++++ AW K H P+ + AA  T+              
Sbjct: 1259 YIDSCRKIK-YMFPKAHAAAYVMMAFRIAWFKVHIPLAYYAAYFTIRAKAFDAEFMIFGK 1317

Query: 800  EKIKKFCQDARQFNIQIMPPSVN-------------------------TPCVDFKVGDNR 834
            EK+K   ++      Q  P   +                         +    F+V  N 
Sbjct: 1318 EKVKAKMKEIEALGNQAAPKDKDMYDDLEIVLEMYERGFSFLPIDIYASHATKFQVEGNA 1377

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +   L +I G+GT  A  +  A+ +KPF+SLED   R    K+    +E L      DC 
Sbjct: 1378 LRPPLNSISGMGTIAAEGLYNAAQEKPFNSLEDVKKR---GKIGNSTMELL---SKFDCL 1431


>gi|312796989|ref|YP_004029911.1| DNA polymerase III alpha subunit [Burkholderia rhizoxinica HKI 454]
 gi|312168764|emb|CBW75767.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia
           rhizoxinica HKI 454]
          Length = 262

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 68/204 (33%), Positives = 106/204 (51%), Gaps = 8/204 (3%)

Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNG 740
           L  T GV I+QEQVMQ+A L +G++  EAD LRRAM   + +  +++  ER + G    G
Sbjct: 5   LARTLGVPIFQEQVMQVAMLAAGFTAGEADQLRRAMAAWRSQGGLEQYYERIVHGMVTRG 64

Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             +  A +IF  +  F +YGF +SHAA++A++ Y +AW+K H    FL A +  +     
Sbjct: 65  YDRAFAESIFAQIRGFGEYGFPESHAASFALLVYVSAWLKCHASAVFLCALLNSQPMGFY 124

Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----DNRIYYSLAAIKGVGTTTARHIMEA 856
              +  QDAR+  ++++P  V     D  +     D  +   L+ I+G+    A  I  A
Sbjct: 125 TPSQLVQDARRHGVEVLPVDVTVSDWDSTLQGHILDAPVRLGLSLIRGLAEDAAARIELA 184

Query: 857 SADKPFDSLEDFCSRVDSKKLNRR 880
            A +PF  + D   R    +L RR
Sbjct: 185 RAVRPFADVTDLARRA---QLTRR 205


>gi|320096511|ref|ZP_08027909.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319976701|gb|EFW08501.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 194

 Score =  112 bits (281), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 69/192 (35%), Positives = 100/192 (52%), Gaps = 10/192 (5%)

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           + +IAR  +F L++ AP LPR          +       +  +A L    A+        
Sbjct: 1   SADIAREAAFDLRLVAPRLPR---------TRVPGGHTPDSWLARLAHEGARERYGDRGE 51

Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
           +    + +D EL VIA + F+GYFLIV + + +     I +  GRGS A S   Y L IT
Sbjct: 52  SPGAWRTIDHELEVIASLGFAGYFLIVKEIVDFCSARGI-LCQGRGSAANSAVCYCLGIT 110

Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            +D +R  LLFERFL+  R   PD DID    RR+EVI++V + YG  R AQ+    + +
Sbjct: 111 AVDAVRHQLLFERFLSSARSGPPDIDIDIESGRREEVIQHVYDAYGRHRAAQVANVITYR 170

Query: 454 AKAALRDVGRAL 465
            ++A+RD  RAL
Sbjct: 171 PRSAIRDAARAL 182


>gi|168187670|ref|ZP_02622305.1| DNA Polymerase III alpha chain [Clostridium botulinum C str.
           Eklund]
 gi|169294481|gb|EDS76614.1| DNA Polymerase III alpha chain [Clostridium botulinum C str.
           Eklund]
          Length = 1032

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 161/832 (19%), Positives = 353/832 (42%), Gaps = 90/832 (10%)

Query: 99  IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
           I+L+    EG++ +  ++S   L     +  RI    +  +  + +I+ T   +G +   
Sbjct: 86  IILIALNREGFKDINRIISEANLSGYYYKP-RIDKELILSLNPKNVIITTACIAGRL--- 141

Query: 159 FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSL 218
             F +    E+ ++     F +  Y+ +Q H+    Y + Q+++L   ++L L+  N+S 
Sbjct: 142 --FKTKDYEEEFVIPLLNHFKNHFYLEVQSHQQQSEYNK-QILELKLKYDLSLIHANDSH 198

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFS--DLPEALENTV 275
           ++  +D +  D+ +         +       PD+  +  R E   + +   + E+L NT+
Sbjct: 199 YIHSKDSKYRDMFLKAKGIFYEDEGSFILDYPDYDEIVERYEKQGVLNKEQIQESLNNTL 258

Query: 276 EIARRCS---FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
            I  +C    F  ++  P            + K++++    K +   E +  +  I +  
Sbjct: 259 -IFDKCEDLEFDKEIKIP-----------KVHKDKDSNKLLKTIISNEWKKERSNICRD- 305

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA--KKNNIPVGPGRGSGAGSVTAYAL 390
              +Y++ +  E++++ +     YF++  + ++ A  +   +    GRGS         L
Sbjct: 306 KWNEYKKAIKEEVDIVEKTNMEDYFILDYEIVKKAVNEYKAVLTRTGRGSAPSFYINKLL 365

Query: 391 TITDIDPLR--FSLLFERFLNPDRM----SMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
             T+ID +    +L   RF++  R+    S+PD D+++     D VI+  ++  G + V 
Sbjct: 366 GFTNIDRVSAPITLYPTRFMSTTRILQTRSLPDIDLNWSN--IDPVIKASKDILGEDGVY 423

Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +I +  LQ  +A R   ++     ++ + + K          +L    +D ++ E    
Sbjct: 424 FMIAYKPLQNSSAFRLWCKSKGFNINEYNEIAK----------NLDDYLEDEKWGE---- 469

Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKW 562
                 ++E S+   G+    +      ++ D+P+S+ + + + V + +   +  +N   
Sbjct: 470 ------IIEESKIFRGVIESVAPSPCSFLLLDKPISEEIGLIK-VGNQICCCLDGYNC-- 520

Query: 563 IEKAGLIKFDFLGLKTLTLLQK-------SLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            ++   +K D+L +   +++ K        +D + Q   KVD         + ++L    
Sbjct: 521 -DQYKYLKNDYLTVSVWSIISKVYEMINEPIDTIQQLENKVD--------DKVWNLYKLG 571

Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
            T  + Q +S+     ++   P  I +I A V+  RPG    +  +  RK     +  + 
Sbjct: 572 LTATLNQADSNYATPLIKKYSPKSIAEISAWVASIRPGFASLMSNFLERKPYTTGVKEL- 630

Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ----KER 731
              D +L+++   ++YQE +M+    L    ++E +          K+  +K+    KE+
Sbjct: 631 ---DNLLQDSYHYMMYQESIMKYLVWLG---IAEDETYGIIKKIAKKKFKEKELEVLKEK 684

Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            + G  KN  ++    N ++++   + Y FN SH+ +  + S   A++K ++P+E+    
Sbjct: 685 LLKGWIKNVGTEEGFENTWQVVNDASKYSFNASHSLSVGIDSLYGAYLKANHPLEYYTVV 744

Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLAAIKGVGTTT 849
           + +   + E+  K   +   FNI+I+PP       ++      N IY  L++IK +    
Sbjct: 745 LNMYEGDTEETSKIVDELSYFNIKILPPKFRHSKSEYMCDKEQNSIYKGLSSIKYISKQV 804

Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           A  + E   +K  D +E          +N R L+ L+       FG S+  L
Sbjct: 805 ADELFELRNEKYNDFIEVLYDLNTKTSINSRQLDILIKLNYFSEFGKSKRLL 856


>gi|83589893|ref|YP_429902.1| DNA polymerase III, alpha subunit [Moorella thermoacetica ATCC 39073]
 gi|83572807|gb|ABC19359.1| DNA polymerase III, alpha subunit, Gram-positive type [Moorella
            thermoacetica ATCC 39073]
          Length = 1214

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 212/993 (21%), Positives = 376/993 (37%), Gaps = 216/993 (21%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S ++G   +  ++ + A     A+AITD   + +    ++     G++ I 
Sbjct: 312  VELHLHTKMSAMDGVTEVAAVVQQAARWGHGAVAITDHGVVQAFPAAAEAGRKYGVKIIY 371

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +  QDN    +Q          I++LV   +G   L  L+SR + LD   +  R+
Sbjct: 372  GVEGYLFDQDNQPPDHQ------RTYHIIILVKNKQGLANLYRLISRAH-LDFFYRKPRL 424

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN----LQ 187
                +QE   EGL++ T   +G + R +   + Q   + + +F      +   N    ++
Sbjct: 425  PRHLIQEY-REGLLLGTACEAGELIRGYLAGADQTRLEEIASFYDFLEIQPLANNDFLIR 483

Query: 188  RHRGYDRYR----ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            + +  DR        Q++ L      P+VAT +  FL+ ED     +L+A        Q 
Sbjct: 484  QGQVADRQALMDMNRQIIALGQKLGKPVVATGDVHFLNPEDAIYRQILLA-------GQG 536

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                V    Y +   EM++ F  L     + V I               PR I ++ +++
Sbjct: 537  YADEVQAPLYYRTTEEMLAEFDYLDGETAHQVVITN-------------PRLIAEQVEEL 583

Query: 304  QKEEENELRNKAVAGLEVRLAQ--GAIAKGYHA----QDYRQRLDFELNVIARMKFSGYF 357
             K   +E     + G E  L +     AK ++     +  R RLD E+  I    F+  +
Sbjct: 584  -KPIPDEFYPPEIPGAEEELTRIVTTRAKEWYGDPLPEIVRARLDKEMQAIIGHGFAVLY 642

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFS------- 401
            LI    +  + ++   VG  RGS   S+ A    IT+++PL         R+S       
Sbjct: 643  LIAHKLVHKSNEDGYLVG-SRGSVGSSLVATMAGITEVNPLPPHYRCPSCRYSEFISDGS 701

Query: 402  -------------------------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +    +Y + 
Sbjct: 702  AKCGADLPARDCPRCGTRLLKDGHDIPFEVFLGFKGDKVPDIDLNFSGEYQPRAHQYTET 761

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T  +L  + A   V + L+                              
Sbjct: 762  IFGKDHVFRAGTIATLAERTAFGFVHKYLE-----------------------------E 792

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ--LVPMYR---DVRS 551
            R  +AR A+ +      + + + G+ R    H  G+++  + +      P+     D  S
Sbjct: 793  RGLKARQAEINC-----LVKGITGVKRTTGQHPGGLMVVPKGVDMHLFTPLQHPADDTGS 847

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
                T F+   I  + L+K D LG    T+++   D        V+   IP D+  T  L
Sbjct: 848  GTITTHFDYHSI-SSRLVKLDLLGHDDPTVIKMLEDLTG-----VNAREIPLDEPRTMSL 901

Query: 612  LTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
             ++               GTLGI +  +  +RQ LE  +P    +++ +           
Sbjct: 902  FSSVEALGIRPEDIGSQVGTLGIPEFGTRFVRQMLEDTRPRTFAELVRISGFSH-----G 956

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
              V+ N  N ++ I S    +   +     ++ Y   +MQ   +        AD+  R M
Sbjct: 957  TDVWLN--NAQDLIKSGTAKLSEAISTRDDIMNY---LMQHGVV--------ADIAFRTM 1003

Query: 718  -----GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
                 GK +K+E ++             I        F    K   Y F K+HA AY  +
Sbjct: 1004 EDVRKGKGVKKEYEE------------AIRAAGVPEWFIQSCKKISYLFPKAHAVAYVTM 1051

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNV-------------EKIKKFCQD-----ARQFNI 814
            +++ A+ K +YP  F A+  ++  D               E+I    +      AR+ NI
Sbjct: 1052 AFRIAYFKVYYPEAFYASFFSIRADEFDADVVAAGLPRIQEEIAALERKGNEATAREKNI 1111

Query: 815  -QIMPPSVNTPC-------VDFKVGD--------NRIYYSLAAIKGVGTTTARHIMEASA 858
              I+  +    C       +D +  D         ++   LAA+ GVG   A  I+ A  
Sbjct: 1112 LTILEVAREMYCRGITLERIDLQKADASRFLVEPGKLLPPLAALPGVGRAAAEAIVRARQ 1171

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            ++PF S+ED   R    ++++ V+E+L   GAL
Sbjct: 1172 ERPFTSVEDLQYR---SRVSKTVIEALEKHGAL 1201


>gi|291516124|emb|CBK69740.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
           longum F8]
          Length = 676

 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 116/470 (24%), Positives = 202/470 (42%), Gaps = 58/470 (12%)

Query: 174 FKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            + +FG D  ++ +  H    +    + +V+LA     PLVAT++  +   +D   HDV 
Sbjct: 5   LQDIFGRDNFFIEIMDHGLSIEHQIRNDLVELAKRINAPLVATSDVHYAKRDDSLKHDVR 64

Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRC--SFILQVH 288
           + +    V+    R +  + ++YL++ + M S+FSD+PEA +NT+ IA RC   F +   
Sbjct: 65  ICIETGDVMDGPHRFKFESEEYYLRSSAVMRSLFSDVPEACDNTLLIAERCDTGFCVAED 124

Query: 289 APILPRFIEKE----CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             ++P+ +  +     + +Q E E  L+ K           G+I           R   E
Sbjct: 125 GSLMPQHVGADGRASSEILQGEVEGWLQTK----------YGSIPDSVW-----NRAQHE 169

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           + VI       Y + VA      ++    VGPG+G  A S+ AYAL I++IDP+ + L F
Sbjct: 170 MAVIRETHAEEYLMAVAYCTNRLREEGHLVGPGKGILARSLVAYALGISEIDPIEYDLPF 229

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
             F +      P   +   +     V++Y+ ++YG+   A +I +       A++DV   
Sbjct: 230 TDFQDS---VFPTAVLQTERGLSRRVLQYLCDRYGNGYAAAVIAYSRFNDAKAVKDV--- 283

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                              +H    Q   D S   E  L D +      I+  L+     
Sbjct: 284 -------------------SHVCGYQRFWDASS-AEVWLQDNAKK---SIADGLKDCIYD 320

Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            S  +  + + ++PL+++  + R   S    T F+ K  ++ GL +    G + L ++Q 
Sbjct: 321 CSVRSDVLALCNKPLAEVTSIVR-FPSGAESTAFDAKGCDELGLPRLRIAGSRVLQVVQD 379

Query: 585 SLDFLAQRGV--KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
           +L F+    V    D S    D+   Y LL+   T GI  L+  GM+  L
Sbjct: 380 ALRFIPDCNVPQAWDDSCSSLDESRVYDLLSAGYTAGIPFLD--GMKSEL 427



 Score = 42.4 bits (98), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 12/150 (8%)

Query: 771 VISYQTAWMKTHYPVEFLAASMTL--EMDNVEKIKKFCQDARQFNIQIMPPSVNT----P 824
           + +Y+ A++KT Y +EF+ A +    E     K++   ++     I +  P++N      
Sbjct: 457 MFAYRVAYVKTLYTIEFMTAMLNSYNEDGARAKLESIFEEIYCLGIHVRMPNINQSQYYA 516

Query: 825 CVDFKVGDNR-----IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLN 878
                 GD+      I     AI+G+    A  I+   +    + S  DF  RV  +  N
Sbjct: 517 TAYSSTGDDEKSAYGIQLGFNAIRGISEQLAEEIVSTRNKGSAYRSFNDFIRRVSLEHCN 576

Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
              +  L+ AGA DC    R  L Q  +++
Sbjct: 577 AGNVNYLIRAGAFDCVNPCRKALAQCGNDL 606


>gi|80159747|ref|YP_398491.1| DNA Polymerase III alpha chain [Clostridium phage c-st]
 gi|78675337|dbj|BAE47759.1| DNA Polymerase III alpha chain [Clostridium phage c-st]
          Length = 1032

 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 168/855 (19%), Positives = 363/855 (42%), Gaps = 93/855 (10%)

Query: 99  IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
           I+L+    +G++ +  ++S   L     +  RI    +  +  + +I+ T   +G +   
Sbjct: 86  IILIALNRDGFKDINRIISEANLSGYYYKP-RIDKELILSLNPKNVIVTTACIAGRL--- 141

Query: 159 FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSL 218
             F +    EK ++     F D  Y+ +Q H+    Y + Q+++L + + L L+  N+S 
Sbjct: 142 --FKTKDYEEKFVIPLLNHFKDHFYLEVQSHKQQSEYNK-QILELKFKYNLSLMHANDSH 198

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS--------DLPEA 270
           ++   D +  D+ +       +  +D      D+   N  E+V  +          + E+
Sbjct: 199 YIYSRDAKYRDMFLKAKG---IIYEDEGGFILDY--PNYDEIVKRYEKQGVLNKEQIQES 253

Query: 271 LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
           L NT+ I  +C  +       +P+        + K++++    K +   E +  +  I +
Sbjct: 254 LNNTL-IFDKCEDLKFDKEIKIPK--------VHKDKDSNKLLKTIISNEWKKERNNICR 304

Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA--KKNNIPVGPGRGSGAGSVTAY 388
                +Y + +  E++++ +     YF++  + ++ A  +   +    GRGS        
Sbjct: 305 D-KWNEYEKAIKEEVDIVQKTNMEDYFILDYEIVKKAVDEYKAVLTRTGRGSAPSFYINK 363

Query: 389 ALTITDIDPLR--FSLLFERFLNPDRM----SMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            L  T+ID +    +L   RF++  R+    S+PD D+++     + VI+  ++  G + 
Sbjct: 364 LLGFTNIDRVSAPITLYPTRFMSTTRILQTRSLPDIDLNWAN--IEPVIKASKDILGEDG 421

Query: 443 VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
           V  +I +  LQ  +A R   ++     ++ + + K +              DD       
Sbjct: 422 VYFMIAYKPLQNSSAFRLWCKSKGFNINEYNEIAKNL--------------DD------Y 461

Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNM 560
           + D    +++E S+   G+    +      ++ D+P+S+ + + + V + +   +  +N 
Sbjct: 462 IEDEKWGKIIEESKIFRGVIESVAPSPCSFLLLDKPISEEIGLIK-VGNQICCCLDGYNC 520

Query: 561 KWIEKAGLIKFDFLGLKTLTLLQK-------SLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
              ++   +K D+L +   +++ K        +D + Q   KVD           ++L  
Sbjct: 521 ---DQYKYLKNDYLTVSVWSIISKVYEMIREPIDTIQQLENKVD--------DRVWNLYK 569

Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              T  + Q +S+     ++   P  I +I A V+  RPG    +  +  RK     +  
Sbjct: 570 LGLTATLNQADSNYATPLIKKYSPKSIAEISAWVASIRPGFASLMSNFLERKPYTTGVKE 629

Query: 674 IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE--ADVLRRAMGKKIKEEMDKQKER 731
           +    D +L+++   ++YQE +M+    L G +  E    + + A  K  ++E++  KE+
Sbjct: 630 L----DNLLQDSYHYMMYQESIMKYLVWL-GIAEDETYGIIKKIAKKKFKEKELEALKEK 684

Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            + G  KN   K    N ++++   + Y FN SH+ +  + S   A++K +YP+E+    
Sbjct: 685 LLKGWIKNVGEKEGFENTWQVVNDASKYSFNASHSLSVGIDSLYGAYLKANYPLEYYTVV 744

Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLAAIKGVGTTT 849
           + +   + E+  K   +   FNI I+ P       ++      N IY  L++IK +    
Sbjct: 745 LNMYEGDTEETSKIVDELNYFNITILSPKFRYSKSEYMCDKEQNSIYKGLSSIKYISKQV 804

Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR--MQLLQSLDN 907
           A  + E   +K  D +E          +N R L+ L+       FG S+  +++ +  DN
Sbjct: 805 ADELFELRNEKYNDFIEVLSDLNTKTSINSRQLDILIKLNYFSEFGKSKKLLKITELADN 864

Query: 908 IQKYAQWVEKNRTNK 922
           +    Q ++K + N+
Sbjct: 865 LLNKKQ-IKKEKLNE 878


>gi|254416530|ref|ZP_05030282.1| hypothetical protein MC7420_2412 [Microcoleus chthonoplastes PCC
           7420]
 gi|196176734|gb|EDX71746.1| hypothetical protein MC7420_2412 [Microcoleus chthonoplastes PCC
           7420]
          Length = 230

 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 127/239 (53%), Gaps = 20/239 (8%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+       AIA+TD   ++ A+E  +     GI+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPQLVDRAVELGMSAIALTDHGVMYGAIELIKVCRGKGIKP 61

Query: 70  IIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           IIG ++ +   D+QD  K   +           V+L    +GY+ L++L +  +L  +G 
Sbjct: 62  IIGNEMYVINGDIQDKTKKKQRKYHQ-------VVLAKNTQGYKNLVKLTTISHL--KGI 112

Query: 127 QSVRI----CLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
           Q   I    C++  +LQ+   +GLI+ +G   G + +A      Q A +    +K++FGD
Sbjct: 113 QGTGIFQRPCINKEFLQQY-RDGLIVTSGCLGGEVPQAILKGDVQKARELAQWYKEVFGD 171

Query: 181 RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             Y+ +Q H    DR    ++V++A   E+ +VATN+S F+S  D EAHD L+ + +  
Sbjct: 172 DYYLEIQDHGSIEDRIVNVEIVKIARELEIKIVATNDSHFISCYDVEAHDALLCIQYGN 230


>gi|227546868|ref|ZP_03976917.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227212830|gb|EEI80711.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 676

 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 116/470 (24%), Positives = 202/470 (42%), Gaps = 58/470 (12%)

Query: 174 FKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            + +FG D  ++ +  H    +    + +V+LA     PLVAT++  +   +D   HDV 
Sbjct: 5   LQDIFGRDNFFIEIMDHGLSIEHQIRNDLVELAKRINAPLVATSDVHYAKRDDSLKHDVR 64

Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRC--SFILQVH 288
           + +    V+    R +  + ++YL++ + M S+FSD+PEA +NT+ IA RC   F +   
Sbjct: 65  ICIETGDVMDGPHRFKFESEEYYLRSSAVMRSLFSDVPEACDNTLLIAERCDTGFCVAED 124

Query: 289 APILPRFIEKE----CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             ++P+ +  +     + +Q E E  L+ K           G+I           R   E
Sbjct: 125 GSLMPQHVGADGRASSEILQGEVEGWLQTK----------YGSIPDSVW-----NRAQHE 169

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           + VI       Y + VA      ++    VGPG+G  A S+ AYAL I++IDP+ + L F
Sbjct: 170 MAVIRETHAEEYLMAVAYCTNRLREEGHLVGPGKGILARSLVAYALGISEIDPIEYDLPF 229

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
             F +      P   +   +     V++Y+ ++YG+   A +I +       A++DV   
Sbjct: 230 TDFQDS---VFPTAVLQTERGLSRRVLQYLCDRYGNGYAAAVIAYSRFNDAKAVKDV--- 283

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                              +H    Q   D S   E  L D +      I+  L+     
Sbjct: 284 -------------------SHVCGYQRFWDASS-AEVWLQDNAKK---SIADGLKDCIYD 320

Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            S  +  + + ++PL+++  + R   S    T F+ K  ++ GL +    G + L ++Q 
Sbjct: 321 CSVRSDVLALCNKPLAEVTSIVR-FPSGAESTAFDAKGCDELGLPRLRIAGSRVLQVVQD 379

Query: 585 SLDFLAQRGVK--VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
           +L F+    V    D S    D+   Y LL+   T GI  L+  GM+  L
Sbjct: 380 ALRFIPDCNVPQVWDDSCSSLDESRVYDLLSAGYTAGIPFLD--GMKSEL 427



 Score = 42.4 bits (98), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 12/150 (8%)

Query: 771 VISYQTAWMKTHYPVEFLAASMTL--EMDNVEKIKKFCQDARQFNIQIMPPSVNT----P 824
           + +Y+ A++KT Y +EF+ A +    E     K++   ++     I +  P++N      
Sbjct: 457 MFAYRVAYVKTLYTIEFMTAMLNSYNEDGARAKLESIFEEMYCLGIHVRMPNINQSQYYA 516

Query: 825 CVDFKVGDNR-----IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLN 878
                 GD+      I     AI+G+    A  I+   +    + S  DF  RV  +  N
Sbjct: 517 TAYSSTGDDEKSAYGIQLGFNAIRGISEQLAEEIVSTRNKGSAYRSFNDFIRRVSLEHCN 576

Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
              +  L+ AGA DC    R  L Q  +++
Sbjct: 577 AGNVNYLIRAGAFDCVNPCRKALAQCGNDL 606


>gi|94502355|ref|ZP_01308822.1| DNA polymerase III alpha subunit [Candidatus Sulcia muelleri str.
           Hc (Homalodisca coagulata)]
 gi|94451087|gb|EAT14045.1| DNA polymerase III alpha subunit [Candidatus Sulcia muelleri str.
           Hc (Homalodisca coagulata)]
          Length = 511

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 130/283 (45%), Gaps = 24/283 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-------- 62
           + H+  H+S+S+L     +N+++ K       A+ ITD  N+     F  +         
Sbjct: 236 YSHIHNHTSFSILSSTXDINSLIKKTIEYDMDAVGITDYGNMMGVFNFINRIKNINDNFL 295

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               I+PIIGC+L I   D +K T++       + + V       GY  L +L S  ++ 
Sbjct: 296 VKKKIKPIIGCELYISYNDLIKKTDK-------IYNQVFFAKNKNGYYNLSKLCSHGFI- 347

Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
           D     + I    L E     LI ++G  +  I           AEK    +  LFGD  
Sbjct: 348 DGYYSGIPIIGKNLVEKYKANLIAVSGDLNSEIPFTILNKGENEAEKVFKWWHNLFGDDF 407

Query: 183 YVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS---- 237
           Y+ + RH   +    +Q++ + +    +  +  NN+ +LS++DY AHD+L+ V +S    
Sbjct: 408 YIEILRHGLKEEDHVNQILLKFSKKFNVKFIPQNNNFYLSQKDYHAHDILLCVKNSQKQS 467

Query: 238 TVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           T + +    R      + Y KN+++M ++FSDLPEA +N  E+
Sbjct: 468 TPIGKGRGFRFGFPNQEFYFKNKNQMYNLFSDLPEAFDNLKEL 510


>gi|207109660|ref|ZP_03243822.1| DNA polymerase III subunit alpha [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 168

 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 96/154 (62%), Gaps = 4/154 (2%)

Query: 510 RLLEISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
           ++ E S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   L
Sbjct: 15  QVWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDL 74

Query: 569 IKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
           IKFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES G
Sbjct: 75  IKFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIES-G 133

Query: 628 MRQALEG-MQPDCIEDIIALVSLYRPGPIDNIVV 660
           M Q L   ++P   EDIIA+++L RPGP+++ +V
Sbjct: 134 MFQGLNKRLRPSSFEDIIAIIALGRPGPMESGMV 167


>gi|289673966|ref|ZP_06494856.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae FF5]
          Length = 200

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
           P + R+L ++ +L G  RH S H  G VI + PL  LVP+     +D  + Q++   ++ 
Sbjct: 33  PILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLVPVENAAMADRTIIQWDKDDLDL 92

Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            GL+K D L L  L+ L+++ D +   RG +  L+ +P DD +TY +++   T+G+FQ+E
Sbjct: 93  VGLLKVDILALGMLSALRRTFDLVHLHRGQRWTLATLPGDDRKTYEMISRADTIGVFQIE 152

Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKE 669
           S      L  ++P+   D++  V++ RPGPI  D +  Y  R+NG+E
Sbjct: 153 SRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRRNGEE 199


>gi|220927905|ref|YP_002504814.1| DNA polymerase III PolC [Clostridium cellulolyticum H10]
 gi|219998233|gb|ACL74834.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10]
          Length = 1433

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 195/895 (21%), Positives = 342/895 (38%), Gaps = 201/895 (22%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++LV    G + L ++VS+ +L    K+  R+    L E   EGLI+ +   +G + RA 
Sbjct: 613  IILVKNKVGLKNLYKIVSQSHLKYLYKKP-RVPKKLLMEY-REGLILGSACEAGELYRAI 670

Query: 160  FFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPL 211
              N S+    +++ F      + L  ++  +N  +    +  ++   ++++L   H  P+
Sbjct: 671  LNNKSEDEISKIVRFYDYLEIQPLGNNQFLINNGKVSSQEELKKINKKIIRLGERHRKPV 730

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            VAT +  F+   D     +LM+    T     D     P  Y +   EM+  FS L E  
Sbjct: 731  VATCDVHFMDPRDEVFRRILMSGRGFT-----DADNQAP-LYFRTTEEMLEEFSYLGEEK 784

Query: 270  ----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
                 +ENT  IA     I  V     P  IE    DI+    N  R K + G E+    
Sbjct: 785  AREVVIENTNLIADMIESIAPVLEGTFPPKIEGAEQDIENMAMN--RAKEIYGEEL---P 839

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
              +AK         RL+ ELN I +  F+  +LI    +  +  +   VG  RGS   S 
Sbjct: 840  EVVAK---------RLEKELNSIIKNGFAVMYLIAQKLVSKSLNDGYLVG-SRGSVGSSF 889

Query: 386  TAYALTITDIDPLR-----------------------------------------FSLLF 404
             A    IT+++ L+                                         + + F
Sbjct: 890  VANMSGITEVNSLQPHYVCEKCKYSEFILDGSYDCGFDLPEKDCPNCGNKLKKDGYDIPF 949

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  D    PD D++F  D +    +Y +  +G   V +  T  S+  K A   V   
Sbjct: 950  ETFLGFDGDKEPDIDLNFSGDYQPVAHKYTEELFGEGYVFRAGTIASVAEKTAYGYVKNY 1009

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L                                 R   + +  ++RL+   +   G+ R 
Sbjct: 1010 LDE-------------------------------RSIVVTNAEINRLV---KGCTGIKRT 1035

Query: 525  ASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GI+I   D+ +    P+ R   D++S++  T F+  ++    ++K D LG    
Sbjct: 1036 TGQHPGGIMIVPKDKEIFDFSPIQRPADDIKSEIITTHFDYHFLH-GSILKLDILGHDDP 1094

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLES 625
            T+++   D        VD   IP  + +T  L ++               GT  + +  +
Sbjct: 1095 TVIRMLEDLTG-----VDARTIPIGEKKTMSLFSSTEALGVKPEDIGSETGTFAVPEFGT 1149

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
              +RQ L   +P    ++I +  L          V+ N  N +E I      +   +   
Sbjct: 1150 KFVRQMLLDTKPQSFSELIRISGLSH-----GTDVWLN--NAQELIRDGITTLSQSICCR 1202

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK-QKERFISGASKNGISKT 744
              ++IY    +  A L    +    + +R+  GK +KEE +   KE  +           
Sbjct: 1203 DDIMIY----LMHAGLPPKTAFKIMEDVRK--GKGVKEEYEAIMKENNVP---------- 1246

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---- 800
               + +    K   Y F K+HAAAY +++++ AW K +YP  F A   T+  D+ +    
Sbjct: 1247 ---DWYIQSCKKIKYMFPKAHAAAYVMMAFRIAWFKVYYPEAFYATYFTVRADDFDAEMM 1303

Query: 801  ---------KIKKFCQDA-----RQFNIQIMPPSVN----------------TPCVDFKV 830
                     KIK+F         ++ N+  +   VN                +    F++
Sbjct: 1304 TYGQDKVRNKIKEFEMKGNNITTKEKNVLTILEVVNEMYARGINFLPINLYLSEATKFRI 1363

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             D  I   + A++G+G   A++I+EA  +  F S+++  +R    K+++ V+E L
Sbjct: 1364 EDKSIRPPMNALQGLGGAAAQNIIEARKNGEFLSIDELRTRA---KISKSVIEIL 1415


>gi|23321269|gb|AAN23129.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|23321271|gb|AAN23130.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|23321273|gb|AAN23131.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 201

 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 115/209 (55%), Gaps = 15/209 (7%)

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSL 218
           N  QV E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+VATN  +
Sbjct: 1   NQQQV-ERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVVATNEVV 57

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEI
Sbjct: 58  FITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEI 117

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA 334
           A+RC+  +++    LP F            E+ L  K+  GLE RL         +    
Sbjct: 118 AKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRR 172

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +Y +RL  EL+VI +M F GYFLIV +F
Sbjct: 173 PEYDERLQVELDVINQMGFPGYFLIVMEF 201


>gi|157310964|ref|YP_001468960.1| putative DNA polymerase III alpha subunit [Corynebacterium phage
           P1201]
 gi|95832112|gb|ABF57512.1| putative DNA polymerase III alpha subunit [Corynebacterium phage
           P1201]
          Length = 476

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 138/297 (46%), Gaps = 26/297 (8%)

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM--QPDCIEDIIALV---SLYRPGPI 655
           +P+DD ET          GIFQ E    R  ++ +    D + D + L    +L RPG +
Sbjct: 11  LPYDDEETLKEFAKDNLTGIFQFEGRATRSIMKKIYSGTDNVPDFMTLADVNALSRPGSL 70

Query: 656 DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            + +   Y +   GKE    IHP++D +L ET   ++YQEQVMQI     G S  E   L
Sbjct: 71  ISGMTAEYIDVARGKEP-RKIHPVVDEILSETNNCLVYQEQVMQIGSRFGGLSDHEIGRL 129

Query: 714 RRAMG-KKIKEEMDKQKERFISGASKN-GISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           R+ +G K+     ++   +F  GA    G  + ++  +++ +A  A Y FN +HA +YA+
Sbjct: 130 RKIIGAKQAGGAFEEFWIKFRDGARDTVGADEALSREVWDYMAASASYLFNIAHAISYAL 189

Query: 772 ISYQTAWMKTHYPVEFL------AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
           ++Y   ++K H+P EF       A+  +     ++      Q+A    + + PP      
Sbjct: 190 VAYWCMYLKVHHPAEFYAASLKSASKKSKTKGKIDPQLPLLQEAIANGLTVSPPHPRLSG 249

Query: 826 VDFKVGDNR--IYYSLAAIKGVGTTTARHIMEA---SADKPFDS-----LEDFCSRV 872
           V ++  ++R  +      I GVG  TA  ++EA   S+   +D       EDF   V
Sbjct: 250 VSWEPNEHRTGVVGGFTQIPGVGEKTAEKMLEARNKSSSSAWDGDAIVEWEDFAPHV 306


>gi|158320555|ref|YP_001513062.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs]
 gi|158140754|gb|ABW19066.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs]
          Length = 1441

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 202/928 (21%), Positives = 355/928 (38%), Gaps = 213/928 (22%)

Query: 78   DMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            D+ D L      K  + T+ S  I++L     G + L  LVS  ++ +   +  RI  S 
Sbjct: 598  DINDKL----SKKLDYKTLKSYHIIILAKNYIGLENLYRLVSESHI-NYFYKKPRIPRSL 652

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL------LTFKKLFGDRLYV--NLQ 187
            L +   EGLI+ T   +G + ++   +  Q   +++      L  + +  +R  +  NL 
Sbjct: 653  LNKF-REGLILGTACEAGELFQSILSSKPQSHIEKIAKYYDYLEIQPIGNNRFLIEKNLA 711

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            ++    +    ++V L     +P+VAT +  FL  +D     +LM     T     D   
Sbjct: 712  KNEEDLKELNRKIVDLGERLNIPVVATCDVHFLENKDSIFRKILM-----TGQGFSDAED 766

Query: 248  VTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              P  Y +   EM+  F  L   +A E  +    R +  ++   PI       E +    
Sbjct: 767  QAP-LYFRTTDEMLEEFIYLGKEKAEEVVIHATNRINDAIEDIIPIPDGTFPPEIEG--- 822

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E ELR       +VR   G        +  + RLD ELN I    ++  ++I    + 
Sbjct: 823  -SEEELRRMCYE--KVRRIYGEDV----PELVKNRLDKELNSIISNGYAVMYIIAHKLVT 875

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFS--------------- 401
             + K+   VG  RGS   S  A    IT+++PL         ++S               
Sbjct: 876  KSLKDGYLVG-SRGSVGSSFAATMSDITEVNPLPPHYICPTCKYSHFILDGSIGSGADLP 934

Query: 402  -----------------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  +    PD D++F  + + E  +Y +  +G  +V 
Sbjct: 935  DKNCPQCGESLMKDGHDIPFEVFLGFEGDKEPDIDLNFAGEYQSEAHKYTEELFGKGKVY 994

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++  K A   V                                   ++ E +  
Sbjct: 995  RAGTIGTIADKTAYGFV----------------------------------RKYVEEKQL 1020

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFN 559
            + ++  +  ++Q   G+ R +  H  G++I   +  + +  P+     D +S +  T F+
Sbjct: 1021 NYNMSEINRLTQGCTGIKRTSGQHPGGVMIVPANYDIHKFCPIQYPANDPKSGVITTHFD 1080

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK---- 615
               I    L+K D LG    ++++   D        V+   IP DD ET  + T+     
Sbjct: 1081 YHSI-SGRLLKLDILGHDGPSIIKMLEDL-----THVNALEIPLDDKETIEIFTSTRPLG 1134

Query: 616  ----------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                      GTLGI +  +  +RQ L   QP    +++ +  L         V  NN +
Sbjct: 1135 ITPEDIHCEVGTLGIPEFGTKFVRQMLIDTQPTTFAELVRISGLSHGTD----VWVNNAQ 1190

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA----DVLRRAMGKKI 721
            +          L+   + E + VI  ++ +M    +L G     A    + +R+  G   
Sbjct: 1191 D----------LVRNNIAELKDVISTRDDIMNYL-ILKGLPPKTAFKIMENVRKGKGLTP 1239

Query: 722  KEEMDKQK----ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            + E + ++    E +I   +K                    Y F K+HAAAY  +S++TA
Sbjct: 1240 ENEQEMKEHNVPEWYIDSCNK------------------IKYMFPKAHAAAYVTMSFRTA 1281

Query: 778  WMKTHYPVEFLAASMTLEMDNVE-------------KIKKFCQ-----DARQFN------ 813
            + K HYP  F A   T + ++ +             KIK+         A++ N      
Sbjct: 1282 YFKVHYPAAFYATYFTTKAEDFDADFIIKGKEAVRLKIKELEAMGNDLTAKEKNFLTVLE 1341

Query: 814  ---------IQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
                     I+++P  + T   D FK+ D ++   L  ++GVG   A+ I+EA  +  F 
Sbjct: 1342 VALEMYCRGIELLPVDLYTSDADRFKIVDGKLLPPLKGLQGVGENAAKSIVEAREEGEFI 1401

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            S+ED   R    K+ + V+E+LV  G +
Sbjct: 1402 SVEDLRKRT---KITKTVVEALVSHGCI 1426


>gi|257458196|ref|ZP_05623350.1| DNA polymerase III, alpha subunit family [Treponema vincentii ATCC
           35580]
 gi|257444490|gb|EEV19579.1| DNA polymerase III, alpha subunit family [Treponema vincentii ATCC
           35580]
          Length = 239

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 118/232 (50%), Gaps = 4/232 (1%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL VHS YSLL+GA S+  ++       Q A+A+TD  N+F+AL F ++  A GI+P+
Sbjct: 5   FVHLHVHSDYSLLDGASSIKKLISTAKNLGQTALALTDHGNMFAALRFFRECKAQGIKPV 64

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IGC++ +             T       ++LL  T  GY+ L+ L S+ Y  +      R
Sbjct: 65  IGCEVYVANGSRFGKPENTNTGVRKYFHLILLAETEIGYRNLMVLCSKGY-TEGMYYKPR 123

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
           I    L +  +EGLI L+   +G +           AE  +  ++ +FG +  ++ LQ+H
Sbjct: 124 IDEELLTQY-SEGLICLSACLAGELPSLLLQGKQAEAEAHVRRYRSIFGINNYFIELQKH 182

Query: 190 RGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
              D  + +  ++++A    +P+V TN++ +  ++D  A D+L+ +     V
Sbjct: 183 GIADEEKAAPMLIEMARKLGVPMVVTNDAHYAEQKDAVAQDILLCIGTKKTV 234


>gi|228475024|ref|ZP_04059752.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            hominis SK119]
 gi|228271009|gb|EEK12397.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            hominis SK119]
          Length = 1438

 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 208/940 (22%), Positives = 355/940 (37%), Gaps = 242/940 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLSNEDAYKRARPTHVTLIVQNQDGLKNLFKIVS-ASLVKYYYRTPRIPRSLLNEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL----------QRH 189
            EG+++ T    G +  A         EK  +   F ++   +LY +L            +
Sbjct: 655  EGILVGTACDEGELFTAVMQRDQSEVEKIAKYYDFIEVQPPKLYQDLIDRELIRDTETLY 714

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--R 247
              YDR     +++   +  +P++AT N+ +L E D  A  +L+A       SQ   P  R
Sbjct: 715  EIYDR-----ILKAGESTGIPVIATGNAHYLFEHDAIARKILIA-------SQPGNPLNR 762

Query: 248  VT-PDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPIL-PRFIEKE 299
             T P+ + +   EM+  F  L E       ++NT E+A R   ++ +   +  PR     
Sbjct: 763  STLPEAHFRTTDEMLDEFHFLGEDKAYDIVVKNTNELADRIEKVIPIKDQLFTPRM---- 818

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSG 355
                  E  NE         E+R      AK  +  D  Q    RL+ EL+ I    FS 
Sbjct: 819  ------EGANE---------EIRELSYTNAKKLYGDDLPQIVIDRLEKELDSIIGNGFSV 863

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------- 398
             +LI    ++ +  +   VG  RGS   S  A    IT+++PL                 
Sbjct: 864  IYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPHCKTSEFFDD 922

Query: 399  -----RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                  F L                    FE FL      +PD D++F  + +     Y 
Sbjct: 923  GSVGSGFDLPDKTCETCGGELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHNYT 982

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            +  +G ++V +  T G++  K A   V   L               ND       Q I  
Sbjct: 983  KVLFGEDKVFRAGTIGTVAEKTAFGFVKGYL---------------ND-------QGI-- 1018

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
                   R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P
Sbjct: 1019 -----HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTP 1060

Query: 555  V-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            +             T F+   I    ++K D LG    T+++     + Q    +D   I
Sbjct: 1061 IQYPADDQSAPWMTTHFDFHSIHD-NVLKLDILGHDDPTMIR-----MLQDLSGIDPKTI 1114

Query: 602  PFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            P DD ET  + ++               GT G+ +  +  +RQ LE  +P    +++ + 
Sbjct: 1115 PVDDKETMQIFSSPASLGVTEEDILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQIS 1174

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             L     +          N +E I S    +  ++     +++Y    +  A L    + 
Sbjct: 1175 GLSHGTDV-------WLGNAQELIRSGICDLSSVIGCRDDIMVY----LMYAGLEPSMAF 1223

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
               + +R+  GK + +EM       I+    N +      +  ++      Y F K+HAA
Sbjct: 1224 KTMESVRK--GKGLTDEM-------INAMKANDVPDWYLDSCLKI-----KYMFPKAHAA 1269

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIKKFCQDA--------- 809
            AY +++ + A+ K H+P+ + AA  T+          + + E IK   +D          
Sbjct: 1270 AYVLMAVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKESIKNTVKDMYSRYMDLGK 1329

Query: 810  -----------------RQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
                             R F +Q  P S+  +   DF + D+ +     A+ G+G   A+
Sbjct: 1330 KEKDVLTVLEIMNEMAHRGFKMQ--PISLEKSQAFDFIIEDDTLIPPFIAVPGLGENVAK 1387

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             I+EA  D PF S ED   +     L+++++E L   G+L
Sbjct: 1388 RIVEAREDGPFLSKEDLNKKA---GLSQKIIEYLDDLGSL 1424


>gi|314936575|ref|ZP_07843922.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            hominis subsp. hominis C80]
 gi|313655194|gb|EFS18939.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            hominis subsp. hominis C80]
          Length = 1438

 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 208/940 (22%), Positives = 355/940 (37%), Gaps = 242/940 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLSNEDAYKRARPTHVTLIVQNQDGLKNLFKIVS-ASLVKYYYRTPRIPRSLLNEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL----------QRH 189
            EG+++ T    G +  A         EK  +   F ++   +LY +L            +
Sbjct: 655  EGILVGTACDEGELFTAVMQRDQSEVEKIAKYYDFIEVQPPKLYQDLIDRELIRDTETLY 714

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--R 247
              YDR     +++   +  +P++AT N+ +L E D  A  +L+A       SQ   P  R
Sbjct: 715  EIYDR-----ILKAGESTGIPVIATGNAHYLFEHDAIARKILIA-------SQPGNPLNR 762

Query: 248  VT-PDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPIL-PRFIEKE 299
             T P+ + +   EM+  F  L E       ++NT E+A R   ++ +   +  PR     
Sbjct: 763  STLPEAHFRTTDEMLDEFHFLGEDKAYDIVVKNTNELADRIEKVIPIKDQLFTPRM---- 818

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSG 355
                  E  NE         E+R      AK  +  D  Q    RL+ EL+ I    FS 
Sbjct: 819  ------EGANE---------EIRELSYTNAKKLYGDDLPQIVIDRLEKELDSIIGNGFSV 863

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------- 398
             +LI    ++ +  +   VG  RGS   S  A    IT+++PL                 
Sbjct: 864  IYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPHCKTSEFFDD 922

Query: 399  -----RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                  F L                    FE FL      +PD D++F  + +     Y 
Sbjct: 923  GSVGSGFDLPDKTCETCGGELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHNYT 982

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            +  +G ++V +  T G++  K A   V   L               ND       Q I  
Sbjct: 983  KVLFGEDKVFRAGTIGTVAEKTAFGFVKGYL---------------ND-------QGI-- 1018

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
                   R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P
Sbjct: 1019 -----HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTP 1060

Query: 555  V-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            +             T F+   I    ++K D LG    T+++     + Q    +D   I
Sbjct: 1061 IQYPADDQSAPWMTTHFDFHSIHD-NVLKLDILGHDDPTMIR-----MLQDLSGIDPKTI 1114

Query: 602  PFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            P DD ET  + ++               GT G+ +  +  +RQ LE  +P    +++ + 
Sbjct: 1115 PVDDKETMQIFSSPASLGVTEEDILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQIS 1174

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             L     +          N +E I S    +  ++     +++Y    +  A L    + 
Sbjct: 1175 GLSHGTDV-------WLGNAQELIRSGICDLSSVIGCRDDIMVY----LMYAGLEPSMAF 1223

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
               + +R+  GK + +EM       I+    N +      +  ++      Y F K+HAA
Sbjct: 1224 KTMESVRK--GKGLTDEM-------INAMKANDVPDWYLDSCLKI-----KYMFPKAHAA 1269

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIKKFCQDA--------- 809
            AY +++ + A+ K H+P+ + AA  T+          + + E IK   +D          
Sbjct: 1270 AYVLMAVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKESIKNTVKDMYSRYMDLGK 1329

Query: 810  -----------------RQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
                             R F +Q  P S+  +   DF + D+ +     A+ G+G   A+
Sbjct: 1330 KEKDVLTVLEIMNEMAHRGFKMQ--PISLEKSQAFDFIIEDDTLIPPFIAVPGLGENVAK 1387

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             I+EA  D PF S ED   +     L+++++E L   G+L
Sbjct: 1388 RIVEAREDGPFLSKEDLNKKA---GLSQKIIEYLDDLGSL 1424


>gi|70726651|ref|YP_253565.1| DNA polymerase III PolC [Staphylococcus haemolyticus JCSC1435]
 gi|123660050|sp|Q4L5W6|DPO3_STAHJ RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|68447375|dbj|BAE04959.1| DNA polymerase III alpha chain PolC-type [Staphylococcus haemolyticus
            JCSC1435]
          Length = 1438

 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 206/936 (22%), Positives = 352/936 (37%), Gaps = 234/936 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V T EG + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NQKLSNEDAYKRARPTHVTLIVQTQEGLKNLFKIVS-ASLVKYYYRTPRIPRSLLNEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL-------QRHRGY 192
            EG+++ T    G +  A         EK  +   F ++   +LY +L            Y
Sbjct: 655  EGILVGTACDEGELFTAVMQRDQSEVEKIAKYYDFIEVQPPKLYQDLIDRELIRDTETLY 714

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT- 249
            + Y   ++++   +  +P++AT N+ +L E D  A  +L+A       SQ   P  R T 
Sbjct: 715  EIYE--RILKAGESTGIPVIATGNAHYLYEHDAIARKILIA-------SQPGNPLNRSTL 765

Query: 250  PDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            P+ + +   EM+  F  L E       ++NT E+A R   ++    PI  +      D  
Sbjct: 766  PEAHFRTTDEMLDEFHFLGEEKAHEIVVKNTNELADRIEKVI----PIKDQLFTPRMDG- 820

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLI 359
                         A  E+R      AK  + +D  Q    RL+ EL  I    FS  +LI
Sbjct: 821  -------------ANEEIRELSYTNAKKLYGEDLPQIVIDRLEKELASIIGNGFSVIYLI 867

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--------------------- 398
                ++ +  +   VG  RGS   S  A    IT+++PL                     
Sbjct: 868  SQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFDDGSVG 926

Query: 399  -RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
              F L                    FE FL      +PD D++F  + +     Y +  +
Sbjct: 927  SGFDLPDKQCSTCGAELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLF 986

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G ++V +  T G++  K A   V   L               ND       Q I      
Sbjct: 987  GEDKVFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI------ 1018

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV--- 555
               R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+   
Sbjct: 1019 -HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYP 1064

Query: 556  ----------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                      T F+   I    ++K D LG    T+++   D        +D   IP DD
Sbjct: 1065 ADDQSASWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDD 1118

Query: 606  HETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             ET  + ++               GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1119 KETMQIFSSPESLGVTEEEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1178

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
               +          N +E I S    +  ++     +++Y    +  A L    +    +
Sbjct: 1179 GTDV-------WLGNAQELIRSGICDLSSVIGCRDDIMVY----LMYAGLEPSMAFKTME 1227

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +R+  GK + EEM       I    +N +      +  ++      Y F K+HAAAY +
Sbjct: 1228 SVRK--GKGLTEEM-------IDAMKENNVPDWYLDSCLKI-----KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIKKFCQDA------------- 809
            ++ + A+ K H+P+ + A+  T+          + + E IK   +D              
Sbjct: 1274 MAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKESIKNTVKDMYSRYMDLGKKEKD 1333

Query: 810  -------------RQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                         R F +Q  P S+  +   DF +  + +     ++ G+G   A+ I+E
Sbjct: 1334 VLTVLEIMNEMAHRGFRMQ--PISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAKRIVE 1391

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  D PF S ED   +     L+++++E L   G+L
Sbjct: 1392 AREDGPFLSKEDLNKKA---GLSQKIIEYLDDLGSL 1424


>gi|255657858|ref|ZP_05403267.1| putative DNA polymerase III, alpha subunit [Mitsuokella multacida
           DSM 20544]
 gi|260850046|gb|EEX70053.1| putative DNA polymerase III, alpha subunit [Mitsuokella multacida
           DSM 20544]
          Length = 765

 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 185/403 (45%), Gaps = 59/403 (14%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           ++ L  HS  SLL+G  ++  ++ +  +   PAI++TD   + + + F ++     I+PI
Sbjct: 2   YISLHNHSDGSLLDGYQTVQEMVARAKSLGMPAISLTDHGTMRNTIRFYEECQKNDIKPI 61

Query: 71  IGCQL----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           +GC+     D++++D   +T+           +V+L    EGY  L +L +  Y  D   
Sbjct: 62  VGCEFYFCPDVNIRDK-SLTHH----------LVILAMNDEGYMNLKKLDTFAYNEDSYY 110

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY--- 183
              RI    L+E  ++GLI L+   +  ++       ++  E+    +K+LFGDR Y   
Sbjct: 111 YKPRIDWEALRE-HSDGLICLSACMASIVN-------TENGEEWFEKYKELFGDRFYAEI 162

Query: 184 --VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
             +NL++   Y+     +V+ LA  +++PLV T ++ +   ED         V HS  + 
Sbjct: 163 QPLNLEKQWEYN----DKVIGLARKYDVPLVVTTDAHYSIPED--------KVYHSHWIR 210

Query: 242 QKDRPRVTPDHYLKNRSEMVS---IFSD-LPEALENTVEIARRCSFILQVHAPILPRFIE 297
                    ++Y+ +  E+ S   I  D + E +ENT  IA  C+  +       P++  
Sbjct: 211 INGNQYHDDENYIWSDDEIRSTKWIPQDVIDECIENTEHIASLCNVTIPDSGSHYPKY-- 268

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             C +  KE+  E+  +    L        + KG + ++Y +R + E+  +    +  Y 
Sbjct: 269 -PCSN-PKEKVREICRRHWKEL--------VPKGKY-KEYAERFEMEMKDLEATNYLEYL 317

Query: 358 LIVADFIQWAKKNNIPVGPGRGS--GAGSVTAYALTITDIDPL 398
           LI+   + W K+  IP+G GRG       V  +  T+ +I+ +
Sbjct: 318 LIIWSVLSWCKEQRIPLGEGRGCSISGTKVLMWNGTVKNIEDI 360


>gi|326791606|ref|YP_004309427.1| DNA polymerase III subunit alpha [Clostridium lentocellum DSM 5427]
 gi|326542370|gb|ADZ84229.1| DNA polymerase III, alpha subunit [Clostridium lentocellum DSM 5427]
          Length = 1468

 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 200/911 (21%), Positives = 341/911 (37%), Gaps = 184/911 (20%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            V+LV    G   L  LVS  +L D   +  R+  S +Q+   EGLI+ +   +G I +A 
Sbjct: 635  VILVKNEIGRINLNRLVSASHL-DYFNRRPRMPKSLIQK-HREGLIIGSACEAGEIFQAI 692

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR----------ESQVVQLAYTHEL 209
                 +    RL++F      +   N       D+Y             +VV+L   +  
Sbjct: 693  LREKEETELARLVSFYDYLEIQPIGNNSFMLRSDKYTAETEEDLRQYNKRVVELGEHYNK 752

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT +  FL  ED     ++MA          D+P V    YL+   EM+  F  L  
Sbjct: 753  PVVATCDVHFLDPEDEIYRRIIMA--GKGFKDADDQPPV----YLRTTEEMLEEFKYLGS 806

Query: 270  ALENTVEIARRCSFILQVH--APILPRFIEKECDDIQKEEENELRNKA--VAGLEVRLAQ 325
                 V I        Q+   +P+LP     E  D          +KA  + G E+    
Sbjct: 807  EKAKEVVITNTQLINEQIEKISPVLPYKCPPEIPDSDATLTQICYDKAHEIYGPELHPV- 865

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                         +RL+ ELN I    F+  ++I    +  +  +   VG  RGS   S 
Sbjct: 866  -----------VVERLERELNSIISNGFAVMYIIAQKLVWDSNDHGYLVG-SRGSVGSSF 913

Query: 386  TAYALTITDIDPLR---------------------------------------------F 400
             A    IT+++PL                                               
Sbjct: 914  AATMSGITEVNPLAPHYICPQCHYVDFESEEVRAYAGRSGCDMPDATCPKCGHELLKEGH 973

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL       PD D++F  D + +  +YV+  +G  +  +  T G+L  K A   
Sbjct: 974  DIPFETFLGFKGDKEPDIDLNFSGDYQAKAHKYVEVIFGEGKAFRAGTIGTLAEKTAFAY 1033

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V                                   ++ E R        +  I++   G
Sbjct: 1034 V----------------------------------YKYYEERDIHKRRAEMKRIAEGCTG 1059

Query: 521  LYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + R    H  GI++   DR + +   +     DV + +  T F    I+   L+K D LG
Sbjct: 1060 VKRTTGQHPGGIIVVPHDRDIYEFTAVQHPANDVMTPIITTHFEYHSIDH-NLLKLDILG 1118

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
                T++++  D        +D   I  DD +   L  +   LGI   +  G++    G+
Sbjct: 1119 HDDPTMIRRLEDLTG-----IDAKTIKLDDKDVMSLFHSTTALGIKPEDIGGIKLGSLGI 1173

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQ 694
                 + +I ++   +P    ++V  +   +G +  + +   LI+        VI  ++ 
Sbjct: 1174 PEFGTDFVIQMLLDAKPQSFSDLVRISGLSHGTDVWLGNAQTLIEEGRGTISTVICTRDD 1233

Query: 695  VMQ--IAQLLS-GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            +M   I Q +  G S +  + +R+  GK +K E ++          +NG+      + + 
Sbjct: 1234 IMTYLINQGMDKGLSFTIMESVRK--GKGLKPEWEE-------AMLENGVP-----DWYI 1279

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA------------SMTLEMDNV 799
               K   Y F K+HAAAY +++++ AW K  YP+ +  A            +M L  + +
Sbjct: 1280 WSCKKIKYMFPKAHAAAYVMMAWRIAWYKIFYPLAYYTAFFSIRASAFSYETMCLGKERL 1339

Query: 800  E----------------------KIKKFCQDARQFNIQIMPPSVNTPCVD--FKVGDNRI 835
            E                      K  +  Q+     I+ MP  + T   D  F++ D +I
Sbjct: 1340 EYHMKELMLKGKENQSAKEQDTLKDMRIVQEMYARGIEFMPIDI-TRADDKRFQIIDGKI 1398

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCF 894
              SL++I G+G   A  ++EA  D PF S EDF +R    K+++ V + +   G L D  
Sbjct: 1399 MPSLSSIDGLGEKAAEAVVEAVKDGPFLSKEDFRNRA---KVSKTVTDKMSELGILGDLT 1455

Query: 895  GYSRMQLLQSL 905
              +++ LL ++
Sbjct: 1456 ESNQLDLLSAM 1466


>gi|309797646|ref|ZP_07692033.1| uracil-DNA glycosylase, family 4 [Escherichia coli MS 145-7]
 gi|308118743|gb|EFO56005.1| uracil-DNA glycosylase, family 4 [Escherichia coli MS 145-7]
          Length = 389

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 9/160 (5%)

Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
           NG++   A  I+ +  K   Y FNKSH+ AY++ISYQ+ W+KTHYP EF AA++T+  + 
Sbjct: 11  NGLTHERAEEIWNMFEKSGAYAFNKSHSVAYSLISYQSMWLKTHYPAEFFAAALTILGE- 69

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHI 853
            +K +   +DA  + I+++PP VN      ++     G   +Y   +A+KG      + I
Sbjct: 70  -DKHQGLVKDALTYGIRVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGCQAI 128

Query: 854 MEA--SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
           M A       F+SL  F   V+ +  N RV ESL   GA 
Sbjct: 129 MRAREKVGGKFESLAQFEEAVEKRACNSRVRESLQKVGAF 168


>gi|323934239|gb|EGB30663.1| uracil DNA glycosylase superfamily protein [Escherichia coli E1520]
          Length = 389

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 9/160 (5%)

Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
           NG++   A  I+ +  K   Y FNKSH+ AY++ISYQ+ W+KTHYP EF AA++T+  ++
Sbjct: 11  NGLTHERAEEIWNMFEKSGAYAFNKSHSVAYSLISYQSMWLKTHYPAEFFAAALTILGED 70

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHI 853
             K +   +DA  + I+++PP VN      ++     G   +Y   +A+KG      + I
Sbjct: 71  --KHQGLVKDALTYGIRVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGCQAI 128

Query: 854 MEA--SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
           M A       F+SL  F   V+ +  N RV ESL   GA 
Sbjct: 129 MRAREKVGGKFESLAQFEEAVEKRACNSRVRESLQKVGAF 168


>gi|157363106|ref|YP_001469873.1| DNA polymerase III PolC [Thermotoga lettingae TMO]
 gi|157313710|gb|ABV32809.1| DNA polymerase III, alpha subunit [Thermotoga lettingae TMO]
          Length = 1379

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 200/908 (22%), Positives = 342/908 (37%), Gaps = 217/908 (23%)

Query: 92   PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV-RICLSWLQEIGTEGLI----- 145
            PF T     ++V T EG + L +L+S  ++  +   SV RI  S LQ +    LI     
Sbjct: 557  PFHTT----IIVQTKEGLKNLYKLISNAHV--KYFYSVPRIPKSELQALRAGLLIGSACV 610

Query: 146  -------MLTGGSSGPIDRAF-FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE 197
                   MLTG +   I+    F++  +V    LL      G      L R R  + Y  
Sbjct: 611  GGELIQEMLTGANESEIEEKMAFYDFVEVMPLDLLPVTNDLG------LTRERLKELY-- 662

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
             ++ ++A    +P+V T +  FL  ED +   VL A     +  Q       P  YL+  
Sbjct: 663  IKLYEIARKINVPVVMTGDVHFLDPEDEKIRKVLQAPQQENISEQ-------PAAYLRTT 715

Query: 258  SEMV----SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
             EM+     IF D  +A +  VE   + +  ++   P+                E +L  
Sbjct: 716  DEMLKAALEIFEDTNKAYKVVVEFPNQIAESVEKIVPL----------------EKKLHT 759

Query: 314  KAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              + G E ++   A+ +          +   +RL+ EL+ I    ++  +LI    +  +
Sbjct: 760  PRIEGAEDQVRTIAMQRAEQLYGTPLPELVERRLNRELDAIINHGYAVLYLIAKKMVDKS 819

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RF------------------ 400
              +   VG  RGS   S  AY + IT+++PL         R+                  
Sbjct: 820  LNDGYVVG-SRGSVGSSFIAYLMGITEVNPLPPHYFCSKCRYVEFIESNEYGSGYDLPVK 878

Query: 401  --------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE F+  +   +PD D++F  D +DE  R+++  +G + V + 
Sbjct: 879  ICPSCGEPLNRNGQDIPFETFMGFEGDKVPDIDLNFSGDYQDEAHRFIETLFGKQHVYRA 938

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T  ++ ++ A   V RA +                            +   R+ R ++ 
Sbjct: 939  GTINTIASRTAFGFV-RAYE----------------------------EKSGRKVRKSE- 968

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRSD---LPVTQFNMK 561
              +RL   +  + G+ R    H  G++I   +  +    P+     +    +  T F+ +
Sbjct: 969  -AERL---ANAITGVKRTTGQHPGGLMIIPKEYEVYDFTPIQHPANTKEAMVLTTHFDYE 1024

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I    L+K D LG    T ++   D        +D   IP DD +T  L ++   LGI 
Sbjct: 1025 SIHD-DLVKIDALGHDDPTFIKILKDM-----TNIDPMKIPMDDEKTLKLFSSVEHLGI- 1077

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            + E  G      G+     + +  ++S  RP     +V  +   +G           D  
Sbjct: 1078 KPEELGTDVGTLGIPEFGTQFVRGMLSETRPKSFAELVRISGLSHG----------TDVW 1127

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK--------KIKEEMDKQKERFI 733
            L   Q      E + Q    LS       D++   + K        KI E + K K    
Sbjct: 1128 LNNAQ------EWIRQKHATLSDVIACRDDIMNYLIKKGMNASKAFKIMENVRKGK---- 1177

Query: 734  SGASKNGISKTIAVNIFELL---AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             G S+    +   + I E      K   Y F K+HA AY  ++++ A+ K H+P+ F AA
Sbjct: 1178 -GLSREDEEELKKLKIPEWYIESCKRIKYLFPKAHATAYVSMAFRIAYFKVHHPLAFYAA 1236

Query: 791  SMTLEMDNV---------EKIKKFCQD------------ARQFNIQIM-----------P 818
              TL+ D           E +KK  ++            A++  +++M           P
Sbjct: 1237 YFTLKGDEFDLEAAMHGPEIVKKKLEELSGINDKDVRERAKETTLEVMLEMFLRGFSFLP 1296

Query: 819  PSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
             +VN      F + +N++      +  +G   A  I+ A  +KPF SLED   R    K+
Sbjct: 1297 VNVNKSHARLFLIEENKLRIPFNKLPNLGDNVAESIIAARREKPFTSLEDIVRRT---KM 1353

Query: 878  NRRVLESL 885
            N+  +ES 
Sbjct: 1354 NKSHIESF 1361


>gi|328905984|gb|EGG25759.1| error-prone DNA polymerase [Propionibacterium sp. P08]
          Length = 368

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 139/297 (46%), Gaps = 15/297 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HSSYS L+GA S  +++ +        +A+TD + L+  +  ++ A   GI  I
Sbjct: 60  YAELHCHSSYSFLDGASSPEDLVTRAVELGLSGLALTDHDGLYGVVRMAEAAEVCGIPTI 119

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +L I + +      Q     P    +++L +  EGY+RL E ++  YL + G +   
Sbjct: 120 IGSELSIGIPE-----PQNGVADPVGSHLLVLANGPEGYRRLTEALTDAYLAEGGHKGHP 174

Query: 131 IC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
           +  L  L E+      +LTG   G + +       Q AE  L     LFG   + V L  
Sbjct: 175 VHNLDHLAEVADGHWTVLTGCRKGAVRQGLAKGMPQ-AEAELRRLVDLFGIGNVLVELTD 233

Query: 189 HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-- 245
           HR     R++ V+ +LA  H +  VAT  + +   E +E    L AV     + + D   
Sbjct: 234 HRAPTDSRDNDVLAELASRHSVSTVATTAAHYAGAEQFELSCALSAVRARRSLDEMDGWL 293

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           P   P   L++ +EM  +FS   +A++NTV +A + +F LQ    + PR  E++  D
Sbjct: 294 P-PGPVARLRSGAEMADLFSRHRDAVDNTVAVAEKTAFHLQS---VRPRLPEQKVPD 346


>gi|15614981|ref|NP_243284.1| DNA polymerase III PolC [Bacillus halodurans C-125]
 gi|13959348|sp|Q9KA72|DPO3_BACHD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|10175038|dbj|BAB06137.1| DNA polymerase III (alpha subunit) [Bacillus halodurans C-125]
          Length = 1433

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 205/920 (22%), Positives = 343/920 (37%), Gaps = 235/920 (25%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            +LL  T EG + L +LVS M  ++   ++ RI  S LQ+   EG+++ +G   G +    
Sbjct: 611  ILLAQTQEGLKNLYKLVS-MAHVEYFYRTPRIPRSQLQK-HREGILVGSGCDKGEVFEGM 668

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ--------------VVQLAY 205
               + Q  E+      K +    Y+ +Q    Y+   E +              +V+L  
Sbjct: 669  MQKTPQEVEE----IAKFYD---YIEVQPLANYEHLIEKELVKSREALQEIVANIVKLGE 721

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
                P+VAT N+ +L EEDY    +L+A    +  ++++  P+V    + +  SEM+  F
Sbjct: 722  QLGKPVVATGNAHYLKEEDYIYRKILIASQGGANPLNKQTLPQV----HFRTTSEMLEAF 777

Query: 265  SDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
            + L E       + NT  IA +   I  +   +    IE   ++I++   N  R + + G
Sbjct: 778  AFLGEEKAKEIVVTNTNHIADQIEEIHPIPDKLYTPKIEGADEEIRQMSYN--RARKIYG 835

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
              +             +    RL+ EL  I    F+  +LI    ++ +  +   VG  R
Sbjct: 836  DPL------------PEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLDDGYLVG-SR 882

Query: 379  GSGAGSVTAYALTITDIDPL------------RF-------------------------- 400
            GS   S  A    IT+++PL             F                          
Sbjct: 883  GSVGSSFVATMTEITEVNPLPPHYVCPNCHHSHFFNDGSVGSGYDLPDENCPKCGTPYVK 942

Query: 401  ---SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
                + FE FL      +PD D++F  + +     Y +  +G   V +  T G++  K A
Sbjct: 943  DGQDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKELFGESYVYRAGTIGTVAEKTA 1002

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
               V +  Q  +                         D  FR A      +DRL+     
Sbjct: 1003 YGYV-KGYQSDH-------------------------DLHFRGAE-----IDRLV---TG 1028

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIE 564
              G+ R    H  GI++        VP Y D+    P+             T F+   I 
Sbjct: 1029 CTGVKRTTGQHPGGIIV--------VPDYMDIHDFCPIQFPADDRGAEWKTTHFDFHSIH 1080

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY--------------H 610
               L+K D LG    T+++   D        +D   IP DD E                 
Sbjct: 1081 D-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPDVLGVTEEQ 1134

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +L   GTLGI +  +  +RQ LE  +P    +++ +  L          V+ N  N    
Sbjct: 1135 ILCKTGTLGIPEFGTRFVRQMLEETKPSTFSELVQISGLSH-----GTDVWLNNAN---- 1185

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK- 729
                  LI     E + VI  ++ +M +  +  G        L  ++  KI E + K K 
Sbjct: 1186 -----ELIYNGTCELKDVIGCRDDIM-VYLIYKG--------LEPSLAFKIMEFVRKGKG 1231

Query: 730  --ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
                +I    K+ +      +  ++      Y F K+HAAAY +++ + A+ K HYP+ +
Sbjct: 1232 LQPEWIEEMKKHDVPDWYIGSCLKI-----KYMFPKAHAAAYVLMAVRIAYFKVHYPILY 1286

Query: 788  LAASMTLEMDN----------------VEKIKKFCQDA-------------------RQF 812
             A+  T+  D+                +E+I     DA                   R F
Sbjct: 1287 YASYFTVRADDFDLDTMVKGSAAIRAKIEEINGKGLDASPKEKSLLTVLELALEMVERGF 1346

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            + Q +     +   +F V  N +     A+ GVGT  A +I++A  ++ F S ED   R 
Sbjct: 1347 SFQKV-DLYRSEATEFLVEGNTLIPPFNALTGVGTNAAINIVKARDEREFLSKEDLQQR- 1404

Query: 873  DSKKLNRRVLESLVFAGALD 892
               K+ + VLE+L   G L+
Sbjct: 1405 --SKITKTVLENLDAHGCLE 1422


>gi|317129167|ref|YP_004095449.1| DNA polymerase III subunit alpha [Bacillus cellulosilyticus DSM 2522]
 gi|315474115|gb|ADU30718.1| DNA polymerase III, alpha subunit [Bacillus cellulosilyticus DSM
            2522]
          Length = 1434

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 205/919 (22%), Positives = 341/919 (37%), Gaps = 233/919 (25%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++   T EG + L +LVS  ++ +   +  RI  S L E   +GL++ +   +G +  A 
Sbjct: 612  IIFGKTKEGLKNLYKLVSLSHI-NYFYRVPRIPKSVLSE-HRDGLMIGSACDNGEVFDAM 669

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVV--QLAYTHELP------- 210
               S +  EK    +        Y+ +Q    Y+   E +++  +LA    +        
Sbjct: 670  MQKSPEEVEKVAEFYD-------YLEVQPPSNYNHLVEKEIIRDELALKDIIKKIIDLGD 722

Query: 211  -----LVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
                 +VAT N+ +L+EED     +L+A    +  +++   P+V    + ++  EM+S F
Sbjct: 723  KLGKKVVATGNAHYLNEEDAIYRKILIASQGGANPLNRTSLPKV----HFRSTDEMLSCF 778

Query: 265  SDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
            S LPE       + NTV +A     I  +   +    IE   D+++  E +  R +++ G
Sbjct: 779  SFLPEEKAKEIVITNTVAVANEIDDIKPIPDDLYTPKIEGADDEMR--ELSYGRARSIYG 836

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
              +             +    RL+ ELN I    FS  +LI    ++ +  +   VG  R
Sbjct: 837  ETL------------PKIVEDRLEKELNSIISNGFSVIYLISQKLVKKSLDDGYLVG-SR 883

Query: 379  GSGAGSVTAYALTITDIDPL----------------------RFSLL------------- 403
            GS   S  A    IT+++PL                       F L              
Sbjct: 884  GSVGSSFVATMTEITEVNPLPPHYVCPECHHSVFFDDGSVGSGFDLPDKECEKCGTQYNK 943

Query: 404  ------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
                  FE FL      +PD D++F  + +     Y +  +G E V +  T G++  K A
Sbjct: 944  DGQDIPFETFLGFKGDKVPDIDLNFSGEYQATAHNYTKELFGEEYVYKAGTIGTVAEKTA 1003

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
               V                            +   DD++ R   L    +DRL+     
Sbjct: 1004 YGFV----------------------------KGYEDDNQLR---LRGAEIDRLV---SG 1029

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIE 564
              G+ R    H  GI++        VP Y D+    P+             T ++   I 
Sbjct: 1030 CTGVKRTTGQHPGGIIV--------VPDYLDIYDFTPIQYPADDAESEWRTTHYDFHSIH 1081

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL------------- 611
               L+K D LG    T+++   D        +D   IP DD E Y L             
Sbjct: 1082 D-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKDIPVDDPEVYKLFSGTESLGVTEEQ 1135

Query: 612  -LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
             +   GT GI +  +  +RQ LE  +P    +++ +  L         V  NN  +    
Sbjct: 1136 IMCKTGTYGIPEFGTRFVRQMLEETKPSSFSELVQISGLSH----GTDVWLNNAAD---- 1187

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK- 729
                  LI       + VI  ++ +M +  +  G        L  ++  KI E + K K 
Sbjct: 1188 ------LIANGTCVLKDVIGCRDDIM-VYLIYKG--------LEHSLAFKIMEFVRKGKG 1232

Query: 730  --ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
              E +I    K+G+      +   +      Y F K+HAAAY +++ + A+ K HYP+ F
Sbjct: 1233 LQEDWIEEMKKHGVPDWYIGSCLRI-----KYMFPKAHAAAYVLMAVRIAYFKVHYPILF 1287

Query: 788  LAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVNTPCV------------ 826
             AA  T+  D+ E          I+K  ++     +   P   +   V            
Sbjct: 1288 YAAYFTVRADDFEIDTMVKGSASIRKRIEEIYAKGLDATPKEKSVVTVLELALEMCERGM 1347

Query: 827  -------------DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                         +F V  + +     AI GVGT  A +I +A  D  F S E+   R  
Sbjct: 1348 SFKKVDLYKSKATEFIVDGDSLIPPFNAINGVGTNAAINIEKAREDGEFLSKENLRER-- 1405

Query: 874  SKKLNRRVLESLVFAGALD 892
              K+ + VLE+L   G L+
Sbjct: 1406 -SKITKTVLENLDDHGCLE 1423


>gi|257125285|ref|YP_003163399.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b]
 gi|257049224|gb|ACV38408.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b]
          Length = 1459

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 202/967 (20%), Positives = 370/967 (38%), Gaps = 211/967 (21%)

Query: 57   EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            +F     + GI  +I  +++ D+Q N++ +    T        ++LV    G + L ELV
Sbjct: 582  KFLNMILSKGILKLI--EINTDLQPNIQNSETLNT--------MILVKNQAGLRDLYELV 631

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-------SSQVAEK 169
            SR ++   GK+  RI  S L  +  E L++ +  S+   +R    N          + EK
Sbjct: 632  SRSHIEFFGKRRPRIPKSLLNSM-RENLLIASSASASERNRGELVNLYLRGTEKDDIEEK 690

Query: 170  -RLLTFKKL-----FGDRLYVNLQRHRGYDRYRESQVVQLAYTHELP------LVATNNS 217
             +   + ++     + DR+    +    YD  RE       Y +EL       +VAT ++
Sbjct: 691  AKFYDYIEIHPTANYTDRVEKRSKEIENYDIIREMN----KYFYELGKKLNKIVVATGDT 746

Query: 218  LFLSEEDYEAHDVLM---AVAHSTVVSQ--KDRPRVTPDHYLKNRSEMVSIFSDLPE--A 270
             +L E +    +VL+        T V++  K+        Y K   EM+  F  L E  A
Sbjct: 747  HYLEEREVINRNVLLLGSGTMWKTEVAEGVKEYEFFDRKLYFKTTEEMLEEFKYLGEETA 806

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
             E  VE   R S +++   PI   F   + +      E+E+R    + L+    +     
Sbjct: 807  QEVVVENTHRISDMIEQVRPIPTGFYPPKIEGA----EDEVRKMTYSKLKELYGENI--- 859

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                 D ++R++ ELN I +  F+  +LI    +  +      VG  RGS   S+ AY +
Sbjct: 860  ---DPDLKERVEKELNSIIQNGFAVLYLIAQKLVHKSVDAGYLVG-SRGSVGSSIVAYLM 915

Query: 391  TITDIDPLR---------------------------------------FSLLFERFLNPD 411
             IT+++ L                                         ++ FE F+  +
Sbjct: 916  GITEVNGLYPHYRCPKCKHTEFMNEEGSGVDYPDKNCPECGTKYIKDGHAIPFEVFMGFN 975

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
               +PD D++F  + + E+ +Y +  +G + V +  T  +L  K A           +  
Sbjct: 976  GDKVPDIDLNFSGEYQGEIHKYTEELFGSDNVFRAGTISTLAEKNA-----------FGY 1024

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            V +  + +   P           + + R+A         ++ I++  EG  +    H  G
Sbjct: 1025 VKKYLEEVEGTP-----------EIKERKA--------EVMRIAKGCEGARKTTGQHPGG 1065

Query: 532  IVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            +++   D+ +    P+ R   D+++    T F+   +++  L+K D LG    T L+   
Sbjct: 1066 MIVVPKDKSIYDFCPIQRPANDMKATSKTTHFDYHVMDEQ-LVKLDILGHDDPTTLR--- 1121

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQAL 632
              + Q    VD+  IP DD E   L               +  GT GI +  +S ++Q L
Sbjct: 1122 --ILQDLTGVDIYTIPLDDKEVMSLFSGTEALGVTPDEIGSPTGTSGIPEFGTSFVKQML 1179

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
               +P    +++ +  L         V  NN ++           +   +     +I  +
Sbjct: 1180 VDTRPKTFAELVRISGLSHGTD----VWLNNAQD----------YVRSGIATLSQIITVR 1225

Query: 693  EQVMQIA---QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            + +M       L    + S  + +R+    K     + +K R  S   K    +   ++ 
Sbjct: 1226 DDIMNKLIDDGLDKSLAFSIMEFVRKGQPTK-----NPEKWREFSKTMKEHGVEQWYIDS 1280

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF--CQ 807
             E +     Y F K HA AY +++ + A+ K HYP+EF  A +  ++ + +    F   +
Sbjct: 1281 CEKIK----YMFPKGHAVAYVMMAVRIAYFKVHYPIEFYTAFLNRKVGDFKMTTMFRPVE 1336

Query: 808  DARQFN-----------------------IQIMPPSVNTPCVD--------FKVGDNRIY 836
            D +Q                         I++    +    +D        F + D +I 
Sbjct: 1337 DLKQAKMELDRKGTLNVKEKQELFLYEILIEMHYRKIELEQIDIYKSEAKLFTIQDGKIR 1396

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L A+ G+G   A +I+ E   D  F S+ED   R    KLN+ ++E +   G L    
Sbjct: 1397 MPLIAMDGLGEAVAENIVSERKVD--FLSIEDLVKRT---KLNKTIVELMKEYGCLKDLS 1451

Query: 896  YSRMQLL 902
             +  Q L
Sbjct: 1452 ATNQQTL 1458


>gi|154502558|ref|ZP_02039618.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149]
 gi|153796750|gb|EDN79170.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149]
          Length = 1503

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 198/912 (21%), Positives = 338/912 (37%), Gaps = 195/912 (21%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I++LV    G   L +L+S  +L    ++  RI  S L +   EGLI+ +   +G + +A
Sbjct: 659  IIILVKNDIGRFNLYQLISASHLTYFARRP-RIPKSLLNQ-HREGLIIGSACEAGELYQA 716

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-----------SQVVQLAYTH 207
                 S  A  RL  F   +  +   N Q     DRY +            ++V L    
Sbjct: 717  ILNQKSPQAVARLAEFYDYYEIQPLGNNQFMIDSDRYGDINSKEDLQNINREIVSLGEKF 776

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
            + P+VAT +  FL  ED     ++MA          D     P  YL+   EM+  FS L
Sbjct: 777  KKPVVATCDVHFLDPEDEVYRRIIMA---GKGFGDAD---TQPPLYLRTTDEMLEEFSYL 830

Query: 268  PEALENTVEI---ARRCSFILQVHAPILPRFIEKECDDIQKEEENELR----NKAVAGLE 320
              A    + I    R C  + ++ +P+ P     +C  + +  E  LR    NKA     
Sbjct: 831  GSAKAREIVIDNPNRICDMVEKI-SPVNPN----KCPPVIENSEQNLRDICYNKAHEIYG 885

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
              L +            + RL+ EL  I    +S  ++I    +  +  +   VG  RGS
Sbjct: 886  ENLPEPV----------QTRLERELTSIISNGYSVMYIIAQKLVWKSNDDGYLVG-SRGS 934

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S  A    IT+++PL                                          
Sbjct: 935  VGSSFVATMAGITEVNPLSPHYYCSECHYSDFDSEEVRAFAGGCGFDMPDKNCPNCGAKL 994

Query: 400  ----FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                F + FE FL       PD D++F  D + +  RY +  +G     +  T G+L  K
Sbjct: 995  VKAGFDIPFETFLGFKGDKEPDIDLNFSGDYQAKAHRYTEVIFGEGHTFKAGTIGTLADK 1054

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V    +                                R  R     +DR+L   
Sbjct: 1055 TAFGYVKNYYEE-------------------------------RGHRKRKCEIDRIL--- 1080

Query: 516  QKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIK 570
            Q   G+ R    H  GIV+      +++  P+     D+ +D+  T F+   I+   L+K
Sbjct: 1081 QGCTGIRRSTGQHPGGIVVLPHGHDINEFTPVQHPANDMTTDIITTHFDYHSIDH-NLLK 1139

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVK--------VDLSLIPFDDHETYHLLTTKGTLGIFQ 622
             D LG    T+++   +++    ++         D + IP DD +   L      LGI  
Sbjct: 1140 LDILGHDDPTMIRTLEEYITSDALENEYNDENPFDATKIPLDDKKVLSLFHDTSALGIKP 1199

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPM 681
             +  G      G+     + +I +V    P  + +++  +   +G    + +   LI+  
Sbjct: 1200 EDIDGCNLGCLGIPEFGTDFVIQMVQDANPQSLSDLIRISGLSHGTNVWLGNAQVLIESG 1259

Query: 682  LKETQGVIIYQEQVM--QIAQLL-SGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGAS 737
                   I  ++ +M   I Q + S  S +  + +R+  G K + EE  K+K+       
Sbjct: 1260 KATISTAICTRDDIMIYLINQGVDSALSFTIMESVRKGKGLKPEWEETMKEKD------- 1312

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA------- 790
                      + +    K   Y F K+HAAAY +++Y+ A+ K +YP+ +  A       
Sbjct: 1313 --------VPDWYIWSCKQISYMFPKAHAAAYVMMAYRIAYCKINYPLAYYGAYFGIRAN 1364

Query: 791  --------------------------SMTLEMDNVEKIKKFCQDARQFNIQIMPPSV-NT 823
                                      S++ +  +V K  K  Q+      + +P  +   
Sbjct: 1365 AFSYELMCQGKDKLNYYMKDYKRRSDSLSNKEQDVLKDMKIVQEMYARGYEFLPLDIYKA 1424

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                F++ D ++   L++I+G+G   A  + EA+ D P+ SL+DF  R    K+++ V+E
Sbjct: 1425 KATKFQIIDGKLMPPLSSIEGMGEKAAEAVEEAAKDGPYLSLDDFRQRT---KVSKTVIE 1481

Query: 884  SLVFAGALDCFG 895
               F   L  FG
Sbjct: 1482 ---FMSDLGLFG 1490


>gi|302668628|ref|YP_003833076.1| DNA polymerase III-associated protein [Butyrivibrio proteoclasticus
           B316]
 gi|302397592|gb|ADL36494.1| DNA polymerase III-associated protein [Butyrivibrio proteoclasticus
           B316]
          Length = 480

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 99/167 (59%), Gaps = 1/167 (0%)

Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
           +G     E ++P  +++++A ++L RP   ++I  Y       + I    P ++ +L  T
Sbjct: 302 AGNAALYEVIRPKNMDELMAAITLDRPLSEEHIEKYLRNIKNSQYITYECPELETILSTT 361

Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI-SKT 744
            G +IYQEQ+M+I Q L G+S  ++D+ RR + K+ +  + + +E F+ GA+ + I    
Sbjct: 362 YGCVIYQEQIMRILQDLGGFSPEKSDLCRRDLSKRKQFTIGEMREEFVYGATSSKIVGMD 421

Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
           +A  IF++L   A Y FNKSH AA++++ Y+ AW+K +Y  EF+ A+
Sbjct: 422 VANAIFDMLWDKARYSFNKSHVAAFSLMIYEMAWLKLYYRSEFMEAA 468



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 3/108 (2%)

Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
            +D   RL  EL VI +    G FLI+ D I++A+ NN+ + PG G+  GS+ AY L IT
Sbjct: 102 TEDVHARLAHELEVINKKGMVGGFLIIYDLIEFARSNNLMISPGCGALPGSLVAYCLGIT 161

Query: 394 DIDPLRFSLLFERFLNPDRMSMPDF--DIDFCQDRRDEVIRYVQNKYG 439
            +DP++ +LLFER+LN  R + P +   ID  +  +  +  Y+   YG
Sbjct: 162 GVDPIKENLLFERYLNMGRET-PSYCIRIDVEKGAKPLIFGYLTEMYG 208


>gi|255994884|ref|ZP_05428019.1| DNA polymerase III, alpha subunit [Eubacterium saphenum ATCC 49989]
 gi|255993597|gb|EEU03686.1| DNA polymerase III, alpha subunit [Eubacterium saphenum ATCC 49989]
          Length = 1229

 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 211/995 (21%), Positives = 369/995 (37%), Gaps = 204/995 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN--NLFSALEFSQKACAAGIQP 69
            V L  H+  S ++G  ++  ++   A+     IAITD      F     + K+C   I+ 
Sbjct: 317  VELHAHTKMSAMDGISNVTELVKTAASFGHKRIAITDHGVVQAFPEAMAAAKSCEEDIKI 376

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L+  M D+ +      +       I++L  T EG + L +LVS  ++ D  ++  
Sbjct: 377  IYG--LEGYMYDDERADYDPDSKKQRTYHIIILAKTREGLKNLYKLVSHSHINDFYRKP- 433

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+  S +++   EGLI+ +    G I   F  N  +        F      +   N    
Sbjct: 434  RLARSVIRKY-REGLILGSACVVGEIYSGFLDNIDEAEMDERAKFYDYLEIQPIGNNSFL 492

Query: 190  RGYDRYR-----------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +  +RY              +++ LA  ++ P+ AT +  ++ E D     +LMA     
Sbjct: 493  KTSERYPSVSNDDDLKEINKKIISLADKNDKPVCATCDLHYIEESDAIYRKILMAG---- 548

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL------ENTVEIARRCSFILQVHAPIL 292
                 D        + +   EM+  F  L E L       NTV IA        V     
Sbjct: 549  --QGYDDLEGDEGLFFRTTEEMLGEFEYLGEELAKKVVINNTVMIADSIEDFDAVPEGKY 606

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P  IE           +++ N        R    A+       +   R+  EL+ I    
Sbjct: 607  PPHIENA---------DQILNDVC-----RKKMEALYGDNPPAEIEDRMHKELSSIIDNG 652

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------- 399
            ++  ++     +  + ++   VG  RGS   S+ A    IT+++PLR             
Sbjct: 653  YAVLYVAAMMLVNKSNEDGYIVG-SRGSVGSSLVAMLSGITEVNPLRPHYRCDECKYFEW 711

Query: 400  ----------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
                                        F++ FE FL  D    PD D++F  + +    
Sbjct: 712  GDDAEYDCGIDMPEKVCPDCNKPLKREGFTIPFETFLGFDGDKEPDIDLNFAGEYQASAH 771

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YV+  +G + V +  T  ++Q K A   V + ++      +R                 
Sbjct: 772  KYVEEIFGSDNVFRAGTVSTIQGKTAYGFVKKYIEETNRNANR----------------- 814

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR-- 547
                            VDRL+    K  G+ R    H  G++I   +  + +  P+ R  
Sbjct: 815  --------------HEVDRLV---SKCTGVRRSTGQHPGGVIIVPTENSIYEFTPIQRPA 857

Query: 548  -DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK-----SLDFLAQRGVKVDLSLI 601
             D++SD+  T F+   IEK  L+K D LG +  ++++K      +D LA      D+  I
Sbjct: 858  NDMKSDVITTHFDYHSIEK-NLLKLDILGHEAPSIIKKLEKITGVDPLAISLSDKDVDAI 916

Query: 602  PFDDHETYHL-----LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             F+   T  +     L   G+ GI +  +  +R  L  ++P    D++  +S +  G   
Sbjct: 917  -FNGVSTLGIEDDDYLFDGGSFGIPEFGTKLVRSMLTEVKPGRFADLLR-ISGFSHGT-- 972

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVL 713
             +   N R+  K K+ S+           Q VI  ++ +M       L  G S    + +
Sbjct: 973  GVWQSNARELIKNKVASM-----------QDVISTRDDIMNYLIQKGLEPGLSFKIMEAV 1021

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+  G   ++E    K    +G  K  I     +          +Y F ++HA AY +++
Sbjct: 1022 RKGRGLTPEQE----KAMLEAGCPKWYIESCNKI----------EYMFPRAHAVAYVIMA 1067

Query: 774  YQTAWMKTHYPVEFLA-------ASMTLEM--DNVEKIKKFCQD---------------- 808
            Y+ A+ K ++P+ + A       A   L+M  +  E +KK  +                 
Sbjct: 1068 YRIAYFKVNFPLHYYAVYFEKKIADFDLDMIAEGKEAVKKEIETLYKRQKLDTTKEEDRL 1127

Query: 809  ----------ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                      AR F   I P    +    F +  N +   ++A+ GVG+  ++ I E   
Sbjct: 1128 TVLELAYEMMARGFGF-IRPILKKSKGRSFVIEGNDLIVPMSALNGVGSNASKKIDEELL 1186

Query: 859  DKPFDSLEDFCSRVD-SKKLNRRVLESLVFAGALD 892
               F S+++F +R     KL   +    VF G  D
Sbjct: 1187 KGDFSSIQEFSTRTGIGGKLCEELKLRGVFEGIAD 1221


>gi|254247147|ref|ZP_04940468.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
 gi|124871923|gb|EAY63639.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
          Length = 428

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 102/425 (24%), Positives = 177/425 (41%), Gaps = 42/425 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA     ++++        IAITD  +L  A      A   G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASHAEELVERADELGYRGIAITDECSLAGAPRMHVAAKEKGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            +IG   D+   +       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVIGSYFDVTPDE----VAPGHDPGPGAFGLVLLAQNREGYGNLSELIS-WRRMEAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            ++    L     +   +        I    +   + V + ++  F+  FG+R  + L Q
Sbjct: 124 YKLTSRILSAPPAKFAHLRGMPDCFAILVPTYPVRADVLDAQVAWFRATFGERARLGLVQ 183

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D  +  ++        + LVA  +            DV+ A+     V++     
Sbjct: 184 LQRALDGVQRDEIRAAGKRRGVRLVALGDVTMHVRSCKALQDVMTAIRVGMPVAECGYAL 243

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L++R  +  +FS   E +  T  +   C F L               DD++ E
Sbjct: 244 APNAEQHLRSRGRIAKLFSA--EEIGETCAMLDACDFDL---------------DDLKYE 286

Query: 307 EENEL-----------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
              EL           + +  AG+  R   G   K        +++ +EL +IA++++  
Sbjct: 287 YPLELVPRGHTPTSYLKQETWAGVARRYWNGVPEK------VAKQIRYELALIAKLEYEP 340

Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
           +FL V D +++A+  NI +  GRGS A SV  Y L IT+++P + ++LFERF++  R   
Sbjct: 341 FFLTVYDIVKYARSQNI-LCQGRGSAANSVVCYCLGITEVNPDQSTMLFERFISEKRGEP 399

Query: 416 PDFDI 420
           PD D+
Sbjct: 400 PDIDV 404


>gi|167470312|ref|ZP_02335016.1| DNA polymerase III [Yersinia pestis FV-1]
          Length = 290

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 88/165 (53%), Gaps = 11/165 (6%)

Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            S+ G+S+T A  I++   K   Y FNKSH  AY++ISYQ+ W+KTHYP EF AA++T+ 
Sbjct: 44  GSQPGLSETKAKEIWDAFEKNGAYQFNKSHPVAYSLISYQSMWLKTHYPAEFFAAALTIL 103

Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTA 850
            ++  K +   +DA  + I ++PP VN      ++     G   +Y   +A+KG      
Sbjct: 104 GED--KHQGLVKDALTYGIHVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGC 161

Query: 851 RHIMEA--SADKPFDSLEDFCSRVDSK--KLNRRVLESLVFAGAL 891
           + IM A       F+SLE F   V+ +    N RV ESL   GA 
Sbjct: 162 QAIMRAREKVGGKFESLEQFEEAVEKRACACNSRVRESLQKVGAF 206


>gi|267798807|gb|ACY79084.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798809|gb|ACY79085.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798815|gb|ACY79088.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798817|gb|ACY79089.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798819|gb|ACY79090.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798821|gb|ACY79091.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798823|gb|ACY79092.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798825|gb|ACY79093.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798827|gb|ACY79094.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798829|gb|ACY79095.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798831|gb|ACY79096.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798833|gb|ACY79097.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798835|gb|ACY79098.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798837|gb|ACY79099.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798839|gb|ACY79100.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 203

 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 108/215 (50%), Gaps = 16/215 (7%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLV 212
            RA    + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+V
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVV 167

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           ATN  +F++EE +EAH++ +A+     +    RP+
Sbjct: 168 ATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPK 202


>gi|260588428|ref|ZP_05854341.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
 gi|260541302|gb|EEX21871.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
          Length = 676

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 144/657 (21%), Positives = 278/657 (42%), Gaps = 99/657 (15%)

Query: 11  FVHLQVHSSYS---LLEGALSLNNILDKIAADQQPAIAITDTNNL---FSALEFSQKACA 64
            +HL VHS YS   L++    ++ ++ K        IAITD  ++     AL+  +K  +
Sbjct: 1   MLHLHVHSDYSNIRLIDSINKVSKLIQKAVNLNNSGIAITDHESVSGHVQALQIVEKGKS 60

Query: 65  AGIQP-----IIGCQLDI-----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            G  P     I+G ++ +     +++DN K    G T F      +LL     G+++L  
Sbjct: 61  EGSIPEDFKLILGNEIYLVNSLEEVRDNYK---SGITKFW---HFILLAKDEIGHKQLRI 114

Query: 115 LVSRMY--LLDQGKQSVRICL-SWLQEIGTEG---LIMLTGGSSGPIDRAFFFNSSQVAE 168
           L S  +      GK      L S L++I  E    LI  T    G           +   
Sbjct: 115 LSSLAWDNSFKTGKMERTPTLKSDLEKIVKENPGHLIASTACLGGECSHWILNKDVEKFN 174

Query: 169 KRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEA 227
           + +     LFG+  Y  LQ +   ++   ++ ++ ++   ++P + T ++ ++++ED   
Sbjct: 175 EFVQYCYDLFGEDFYFELQPNNSEEQVLVNKTLISISEQLDIPFIVTCDAHYVNKED--- 231

Query: 228 HDVLMAVAHSTVVSQKDRPRVTPDHY----LKNRSEMVSIF------SDLPEALENTVEI 277
                 V H   ++  +  R   D Y    + N +E+           ++ +A+ NT  I
Sbjct: 232 -----RVFHEAYLNSHEEEREVGDFYATTYMMNVTEIHEYLDWQIGEENVNKAIRNTEVI 286

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELR----------------NKAVAGLEV 321
           A + S     H+ I+P     E +  + +EE+  +                NK    L  
Sbjct: 287 ADKVSNYTLAHSTIVP-----EANIPEYQEEHYFKDFYDTHEYIRKFAYSDNKYDRYLLH 341

Query: 322 RLAQGAIAKGYHA--QDYR-----QRLDFELNVIARM------KFSGYFLIVADFIQ--W 366
            ++QG   KGY+   +D        R++ EL+ + ++        S Y++   + I+  W
Sbjct: 342 LISQGFKTKGYYVGIKDEELKILIDRIEIELSEMWKVTEKIKNSISSYYISTLELIEIMW 401

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            + +++ VG  RGS  G  T Y + +  ++P+++ L   R ++ +R  + D D+D  ++R
Sbjct: 402 NEGDSL-VGVARGSVTGMYTMYLIGLIQMNPIQWGLPHWRHISHERPELADIDLDSQRNR 460

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R +++  ++ + G  RV    TF +  +K+A+    R L +       +  LIP      
Sbjct: 461 RKQIVNAIKKRKGERRVLNSCTFKTEGSKSAVITAARGLGVDNDIAQHIANLIPITRGFT 520

Query: 487 VSLQAI----ADDSRFREARLAD--PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            S+        ++ R      A+    +  LLE +  +EGL    S HA+ + + +    
Sbjct: 521 WSIHDCLYGNEEEERKPVIEFANEIKKIPNLLETALNIEGLISGRSIHASAVYLFNDDFI 580

Query: 541 QLVPMYRDVRSDLP----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
           +      + R   P    +TQFNM   +  G +K D L + +L +++  ++ L + G
Sbjct: 581 E-----HNARMKAPNGTYITQFNMHDSDWCGGLKQDMLTISSLDIVRHCMELLIEAG 632


>gi|326204061|ref|ZP_08193922.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
            2782]
 gi|325985828|gb|EGD46663.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
            2782]
          Length = 1433

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 193/898 (21%), Positives = 338/898 (37%), Gaps = 207/898 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++LV    G + L ++VS+ +L    K+  R+    L E   EGLI+ +   +G + RA 
Sbjct: 613  IILVKNKVGLKNLYKIVSQSHLKYFYKKP-RVPKKLLMEY-REGLILGSACEAGELYRAI 670

Query: 160  FFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPL 211
              N S+    +++ F      + L  ++  +N  +    +  ++   ++++L   H   +
Sbjct: 671  LNNKSEEEISKIVRFYDYLEIQPLGNNQFLINNGKVSSQEELKKINKKIIRLGERHRKLV 730

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            VAT +  F+   D     +LMA    T     D     P  YL+   EM+  FS L E  
Sbjct: 731  VATCDVHFMDPRDEVFRRILMAGRGFT-----DADNQAP-LYLRTTDEMLEEFSYLGEEK 784

Query: 270  ----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
                 +ENT  IA     I  V     P  IE    DI  E     R K + G ++    
Sbjct: 785  AREVVIENTNLIADMIESIAPVLEGTYPPNIEGAEQDI--ENMAMTRAKEIYGEDL---- 838

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                     +   QRL+ ELN I +  F+  +LI    +  +  +   VG  RGS   S 
Sbjct: 839  --------PEVVAQRLEKELNSIIKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVGSSF 889

Query: 386  TAYALTITDIDPLR-----------------------------------------FSLLF 404
             A    IT+++ L+                                         + + F
Sbjct: 890  VANMSGITEVNSLQPHYVCEKCKYSEFVLDGTYDCGFDMPEKECPNCGNKLKKDGYDIPF 949

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  D    PD D++F  D +    +Y +  +G   V +  T  S+  K A   V   
Sbjct: 950  ETFLGFDGDKEPDIDLNFSGDYQPVAHKYTEELFGEGYVFRAGTIASVAEKTAYGYVKNY 1009

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L                                 RE  + +  ++RL+   +   G+ R 
Sbjct: 1010 LDE-------------------------------REIIVTNSEINRLV---KGCTGIKRT 1035

Query: 525  ASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GI+I   D+ +    P+ R   D +S++  T F+  ++    ++K D LG    
Sbjct: 1036 TGQHPGGIMIVPKDKEIFDFSPIQRPADDTQSEIITTHFDYHFLH-GSILKLDILGHDDP 1094

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLES 625
            T+++   D        VD + IP  + +T  L  +               GT  I +  +
Sbjct: 1095 TVIRMLEDLTG-----VDATTIPIGEEKTMSLFNSTEALGVKPEDIGSETGTFAIPEFGT 1149

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
              +RQ L   +P    ++I +  L          V+ N  N +E I +    +   +   
Sbjct: 1150 KFVRQMLMDTKPRSFSELIRISGLSH-----GTDVWLN--NAQELIRNGITTLSQSICCR 1202

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM----DKQKERFISGASKNGI 741
              ++IY    +  A L    +    + +R+  G K + E+    +K  + +I    K   
Sbjct: 1203 DDIMIY----LMHAGLPPKTAFKIMEDVRKGKGVKDEYEVVMKENKVPDWYIQSCKK--- 1255

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
                             Y F K+HAAAY +++++ AW K +YP  F     T+  D+ + 
Sbjct: 1256 ---------------IKYMFPKAHAAAYVMMAFRIAWFKVYYPEAFYTTYFTVRADDFDA 1300

Query: 801  ------------KIKKFCQDA-----RQFNIQIMPPSVN----------------TPCVD 827
                        KIK+F         ++ N+  +   VN                +    
Sbjct: 1301 EMMAHGQDKVRNKIKEFEMKGNNITTKEKNVLTILEVVNEMYARGINFLPIHLYLSEATK 1360

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F++ D  I   L A++G+G   A++I+EA  +  F S+++  ++    K+++ V+E L
Sbjct: 1361 FRIEDKGIRPPLNALQGLGGAAAQNIVEARKNGEFLSIDELRTKA---KISKSVIEIL 1415


>gi|313835829|gb|EFS73543.1| PHP domain protein [Propionibacterium acnes HL037PA2]
          Length = 312

 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 84/289 (29%), Positives = 135/289 (46%), Gaps = 14/289 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HSSYS L+GA S  +++ +        +A+TD + L+  +  ++ A   GI  I
Sbjct: 4   YAELHCHSSYSFLDGASSPEDLVTRAVELGLSGLALTDHDGLYGVVRMAEAAEVCGIPTI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +L I + +      Q     P    +++L +  EGY+RL E ++  YL + G +   
Sbjct: 64  IGSELSIGIPE-----PQNGVADPVGSHLLVLANGPEGYRRLTEALTDAYLAEGGHKGHP 118

Query: 131 I-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
           +  L  L E+      +LTG   G + +       Q AE  L     LFG   + V L  
Sbjct: 119 VHNLDHLAEVADGHWTVLTGCRKGAVRQGLAKGMPQ-AEAELRRLVDLFGIGNVLVELTD 177

Query: 189 HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD--- 244
           HR     R++ V+ +LA  H +  VAT  + +   E +E    L AV     + + D   
Sbjct: 178 HRAPTDSRDNDVLAELASRHSVSTVATTAAHYAGAEQFELSCALSAVRARRSLDEMDGWL 237

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            P   P   L++ +EM  +FS   +A++NTV +A + +F LQ   P LP
Sbjct: 238 PP--GPVARLRSGAEMADLFSRHRDAVDNTVAVAEKTAFHLQSVRPRLP 284


>gi|289752087|ref|ZP_06511465.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           T92]
 gi|289692674|gb|EFD60103.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           T92]
          Length = 399

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 157/350 (44%), Gaps = 18/350 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    ++ 
Sbjct: 64  AYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELDVRT 123

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           + G +L      +L  T + + P P  P +++L    EGY+RL   ++  +L    K   
Sbjct: 124 VFGAEL------SLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEKGKP 177

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
           R     L E       +LTG   G + +A        A++ L      F   R+ + L  
Sbjct: 178 RYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIELTH 237

Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE-AHDVLMAVAHSTVVSQKDRP 246
           H    D  R + +  LA    + +VAT  + F        A  +    A  ++ S     
Sbjct: 238 HGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAAGWL 297

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +L++  EM  +F+  PEA+    E+  R +F LQ+ AP LP F   +  D    
Sbjct: 298 APLGGAHLRSGEEMARLFAWCPEAVTAAAELGERWAFGLQLIAPRLPPF---DVPDGHT- 353

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
           E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GY
Sbjct: 354 EDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGY 398


>gi|215428873|ref|ZP_03426792.1| error-prone DNA polymerase [Mycobacterium tuberculosis T92]
          Length = 380

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 157/350 (44%), Gaps = 18/350 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    ++ 
Sbjct: 45  AYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELDVRT 104

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           + G +L      +L  T + + P P  P +++L    EGY+RL   ++  +L    K   
Sbjct: 105 VFGAEL------SLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEKGKP 158

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
           R     L E       +LTG   G + +A        A++ L      F   R+ + L  
Sbjct: 159 RYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIELTH 218

Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE-AHDVLMAVAHSTVVSQKDRP 246
           H    D  R + +  LA    + +VAT  + F        A  +    A  ++ S     
Sbjct: 219 HGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAAGWL 278

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +L++  EM  +F+  PEA+    E+  R +F LQ+ AP LP F   +  D    
Sbjct: 279 APLGGAHLRSGEEMARLFAWCPEAVTAAAELGERWAFGLQLIAPRLPPF---DVPDGHT- 334

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
           E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GY
Sbjct: 335 EDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGY 379


>gi|267798813|gb|ACY79087.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 203

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 107/215 (49%), Gaps = 16/215 (7%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLV 212
            RA    + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+V
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVV 167

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           ATN  +F++EE +EAH++ + +     +    RP+
Sbjct: 168 ATNEVVFITEESFEAHEIQVPIHDGYTLEDPRRPK 202


>gi|223044235|ref|ZP_03614272.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            capitis SK14]
 gi|222442385|gb|EEE48493.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            capitis SK14]
          Length = 1438

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 202/936 (21%), Positives = 353/936 (37%), Gaps = 234/936 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+TN+          + L+V   EG + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVKYYYRTPRIPRSLLNEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQRHRGYDRYRES- 198
            EG+++ T    G +  A         EK  +   F ++    LY +L   R   R  E+ 
Sbjct: 655  EGILVGTACDEGELFTAVMQKDQAEVEKIAKYYDFIEVQPPALYQDLM-DRELIRDNETL 713

Query: 199  -----QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-P 250
                 ++++   +  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P
Sbjct: 714  TEIYQRLIEAGDSVNIPVIATGNAHYLYEHDAIARKILIA-------SQPGNPLNRTTLP 766

Query: 251  DHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            + + +   EM+  F  L E       ++NT E+A R   ++ +   +    +E   D   
Sbjct: 767  EAHFRTTDEMLDEFHFLGEEKAYEIVVKNTNELAERIERVVPIKDKLFTPRMEGAND--- 823

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
                           E+R    + AK  + +D  Q    RL+ EL  I    FS  +LI 
Sbjct: 824  ---------------EIRELSYSNAKKLYGEDLPQIVIDRLEKELESIIGNGFSVIYLIS 868

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 869  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFNDGSVGS 927

Query: 399  RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE FL      +PD D++F  + +     Y +  +G
Sbjct: 928  GFDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 987

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND       Q I       
Sbjct: 988  EDKVFRAGTIGTVAEKTAFGFVKGYL---------------ND-------QGI------- 1018

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
              R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+    
Sbjct: 1019 HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQFPA 1065

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1119

Query: 607  ETYH--------------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            +T                +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 DTMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                ++ + N ++  ++ I  +  +I         +++Y    +  A L    +    + 
Sbjct: 1180 T---DVWLGNAQELIRQGICDLSSVIGC----RDDIMVY----LMYAGLEPSMAFKTMEF 1228

Query: 713  LRRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +R+  G+ + +EM +  KE  +     +   K               Y F K+HAAAY +
Sbjct: 1229 VRK--GRGLTDEMVEAMKENDVPDWYLDSCRKI-------------KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDA------------- 809
            ++ + A+ K H+P+ + AA  T+   + +          I+   +D              
Sbjct: 1274 MAVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1333

Query: 810  -------------RQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                         R F +Q  P S+  +   DF + ++ +     A+ G+G   A+ I+E
Sbjct: 1334 VLTVLEIMNEMAHRGFRMQ--PISLEKSQAFDFVIEEDTLIPPFVAVPGLGENVAKRIVE 1391

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  + PF S ED   +     L+++V++ L   G+L
Sbjct: 1392 AREEGPFLSKEDLNKKA---GLSQKVIDYLDEMGSL 1424


>gi|312143668|ref|YP_003995114.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904319|gb|ADQ14760.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
          Length = 1401

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 193/906 (21%), Positives = 338/906 (37%), Gaps = 210/906 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            VLL    +G + L +LVS  +L D   +  RI  S L +   +GL++ +   SG I +AF
Sbjct: 580  VLLAKNKKGLKNLYKLVSISHL-DNFYRKPRILKSKLLQ-HRKGLLIGSACESGQIYQAF 637

Query: 160  FFNSSQVAEKRL------LTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLV 212
              N  +   K++      L  + L  +   +  + +   D      ++ QL       +V
Sbjct: 638  INNRPKNEIKKIAKLYDYLELQPLANNEFLIPEKVNSREDLININKKIYQLGQELNKEVV 697

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS--DLPEA 270
            AT ++ FL  +D    ++L A  +      +      P  Y +   EM++ FS  D   A
Sbjct: 698  ATTDAHFLDPKDSIFREILQAGQNFADAENQ------PPLYYRTTEEMLAEFSYFDGQTA 751

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
             E  ++   +    ++   PI       E +      E+E+R  A             A 
Sbjct: 752  KEIVIDNPNKILSKIEAIQPIPDGLYTPEIEG----AEDEIREMAYQK----------AH 797

Query: 331  GYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
             Y+ Q+  Q    RL+ ELN I    F+  +LI    ++ +  +   VG  RGS   S  
Sbjct: 798  QYYGQELPQLVIDRLEKELNSIIENGFAVIYLIAHKLVKKSLDDGYLVG-SRGSVGSSFV 856

Query: 387  AYALTITDIDPL----------------------------------------RFSLLFER 406
            A    IT+++PL                                         F + FE 
Sbjct: 857  ATMTGITEVNPLPPHYRCPECSNYEFVDSESVGSGIDLADKKCECGAKYIKDGFDIPFEV 916

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            F+  +   +PD D++F  + + E+ RY ++ +G + V +  T  ++  + A   V   L 
Sbjct: 917  FMGFEGNKVPDIDLNFSGEYQSEIHRYTEDYFGRDYVYKAGTISTIADRTAFGFVKNYL- 975

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
                                        D R  E + A+  +DRL+   +   G+ R   
Sbjct: 976  ----------------------------DDRGIEVKRAE--IDRLV---KGCTGVRRTTG 1002

Query: 527  THAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  G++I    + +    P+     D  +D+  T F+   I    ++K D LG    T 
Sbjct: 1003 QHPGGLMIVPKSKNIFDFTPIQHPANDQETDIRTTHFDYHSIS-GRILKLDLLGHDDPTS 1061

Query: 582  LQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSG 627
            L+   D       KV     P DD  T  + ++               GTLGI +  +S 
Sbjct: 1062 LKMLEDMTGIEPKKV-----PLDDQATMSIFSSTDKLGVDSAVLGTDIGTLGIPEFGTSF 1116

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR----KNGKEKIVSIHPLIDPMLK 683
            ++Q L   +P    +++ +  L         V  NN     K GK K+            
Sbjct: 1117 VQQMLRDTRPSSFSELVRISGLSHGTD----VWLNNAQKLIKQGKAKLAE---------- 1162

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM--GKKIKEEMDKQKERFISGASKNGI 741
                VI  ++ +M    L  G    +A V+   +  GK + EE             +N +
Sbjct: 1163 ----VISVRDDIMNYL-LTKGLDPLKAFVIMENVRKGKGLTEE------------EENIM 1205

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
                  N +    K   Y F K+HAAAY +++Y+ A+ K H+P  F     +++ D+ + 
Sbjct: 1206 RDKNVPNWYIDSCKKIKYMFPKAHAAAYVMMAYRIAYFKVHHPAAFYTTYFSIKADDFDA 1265

Query: 801  --------------------------------KIKKFCQDARQFNIQIMPPSV-NTPCVD 827
                                            K+ K   +A    I+ +   +  +   +
Sbjct: 1266 QLACNGKAKVIAKIKELENKGNEITTKESGTLKVLKIVLEAMMRGIEFLAVDIYQSKATE 1325

Query: 828  FK-VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F+ +GDN++   L +++G+G + A  ++       F S+E+  +R     L + V+E L 
Sbjct: 1326 FQHLGDNKLLAPLISLQGLGGSAAESVVREREKSDFTSIEELSNRT---CLTKTVIEVLK 1382

Query: 887  FAGALD 892
              G+LD
Sbjct: 1383 EHGSLD 1388


>gi|302389800|ref|YP_003825621.1| DNA polymerase III catalytic subunit, PolC type [Thermosediminibacter
            oceani DSM 16646]
 gi|302200428|gb|ADL07998.1| DNA polymerase III catalytic subunit, PolC type [Thermosediminibacter
            oceani DSM 16646]
          Length = 1415

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 196/927 (21%), Positives = 350/927 (37%), Gaps = 209/927 (22%)

Query: 81   DNLKMTNQ---GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
            D+L M NQ     T +      ++LV  ++G + L +LVS  +L +   +  RI  S L+
Sbjct: 572  DDLSMINQVNKKATQYLNSYHAIILVKNSQGLRDLYKLVSISHL-EYFYRHPRIPKSLLK 630

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRG 191
            +   EGLI+ +G  +G + ++  ++ S    +R++ F      + L  ++  +       
Sbjct: 631  KY-REGLIVGSGCEAGELFQSLIYHHSDKDIERIVFFYDFLEIQPLQNNKFLIEKGILSN 689

Query: 192  YDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             ++ +E   ++ QL   +  P+V T +  FL+ ED     +L+     TV   +D   + 
Sbjct: 690  EEKLKEINKRIYQLGKKYNKPVVITGDVHFLNPEDETYRKILL-----TVQGYRDN-NLD 743

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               YLK   EM+     L E     V I               P  I  E +D  K   +
Sbjct: 744  SGLYLKTTEEMLDECRYLGEEAAKEVVIEN-------------PNRIADEIEDGIKPVPD 790

Query: 310  ELRNKAVAGLEVRLAQGAI--AKGYHAQDY----RQRLDFELNVIARMKFSGYFLIVADF 363
            EL    + G +  +       AK  + ++     ++R++ ELN I    +S  +LI    
Sbjct: 791  ELYPPKIEGADEEIINMTYNRAKEIYGEELPEIVKKRIERELNSIVNNGYSVIYLIAHKL 850

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------------------- 398
            ++ +  +   VG  RGS   S+ A    IT+++PL                         
Sbjct: 851  VKKSLDDGYLVG-SRGSVGSSLVATMCGITEVNPLPPHYLCPKCKNSIFPDNVEGIVGPD 909

Query: 399  ----------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                             +++ FE F+  +   +PD D++F  + +    +Y +  +G   
Sbjct: 910  LPDKICPVCGCPMKKDGYNIPFEVFMGFEGDKVPDIDLNFSGEYQPIAHKYTEELFGKNN 969

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            V +  T  ++  K A   V RA    Y +  R+                    S +   R
Sbjct: 970  VFRAGTISTIAEKTAYGFV-RA----YLEEKRITA------------------SEYEIKR 1006

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQ 557
            LA             + G+ R    H  G+++   D+ + +  P+     D  S +  T 
Sbjct: 1007 LA-----------AGITGVKRTTGQHPGGLMVVPKDKEIFEFTPIQYPADDKESGVITTH 1055

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL----- 612
            F+   I +  L+K D LG    T+++     + +    +D   IP DD  T  +      
Sbjct: 1056 FDYHSISER-LLKLDLLGHDDPTVIK-----MLEEETGIDAKKIPLDDRATMAIFSSLEP 1109

Query: 613  ---------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
                     TT GTLG+ +  +  +RQ LE  +P    +++ +  L         V  NN
Sbjct: 1110 LGLKPEDVGTTVGTLGVPEFGTRFVRQMLEETRPTTFSELVRISGLSH----GTDVWLNN 1165

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA----DVLRRAMGK 719
             ++          LI   +   + VI  ++ +M I  +  G     A    + +R+  G 
Sbjct: 1166 AQD----------LIKNKMATLKEVIATRDDIM-IHLIEKGIDHKTAFTIMEKVRKGKGL 1214

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K +EE             +NG+ +      F    K   Y F K+HA AY +++++ A+ 
Sbjct: 1215 KPEEEQI---------LKENGVEQW-----FIDSCKKIKYMFPKAHAVAYVIMAFRIAYF 1260

Query: 780  KTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVNTPCV---- 826
            K HYP  F A   T+  D+ +         KIK+  ++  +      P   N   +    
Sbjct: 1261 KVHYPEAFYATYFTVRADDFDAKLILQGPKKIKEVIEEINKKEKNATPKEKNLLTILEVA 1320

Query: 827  ---------------------DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
                                  F +    I   L A+ G+G + A+ I        F S+
Sbjct: 1321 NEMYMRGIQFIPIDLYKSHYSKFIITKEGILPPLNALPGLGLSAAQSIYNERQKGEFASI 1380

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALD 892
            ED   R    ++ + V+E L  +G L+
Sbjct: 1381 EDLRMRT---RVTKNVVEILRQSGVLN 1404


>gi|325263721|ref|ZP_08130454.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            sp. D5]
 gi|324030759|gb|EGB92041.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            sp. D5]
          Length = 1498

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 193/921 (20%), Positives = 347/921 (37%), Gaps = 213/921 (23%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I++L+    G   L +L+++ +L    ++  RI  S L E   EGLI+ +   +G + +A
Sbjct: 653  IIILIKNDIGRYNLYQLITQSHLTYYARRP-RIPKSVLNEY-REGLIVGSACEAGELYQA 710

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-----------SQVVQLAYTH 207
               N S  +  RL  F   +  +   N +     D+Y +            ++V+L    
Sbjct: 711  ILNNKSAESIARLADFYDYYEIQPLGNNRFMMVSDKYPDINTKEDLEEINRKIVELGEKF 770

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
            + P+V T +  FL  ED     ++MA    +   ++      P  YL+   EM+  F  L
Sbjct: 771  KKPVVGTCDVHFLDPEDEVYRRIIMAGKGFSDADEQ------PPLYLRTTEEMLEEFEYL 824

Query: 268  PEA------LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR----NKA-- 315
              A      +ENT +I   C  + ++ +PI P     +C  +    E +LR    NKA  
Sbjct: 825  GSAKAREIVIENTNKI---CDMVEKI-SPINPN----KCPPVIANSEQDLRDICYNKAHE 876

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
            + G ++             +    RL+ ELN I    +S  ++I    +  +  +   VG
Sbjct: 877  IYGEDL------------PEPVSTRLEKELNSIISNGYSVMYIIAQKLVWKSNDDGYLVG 924

Query: 376  PGRGSGAGSVTAYALTITDIDPLR------------------------------------ 399
              RGS   S  A    IT+++PL                                     
Sbjct: 925  -SRGSVGSSFVATMSGITEVNPLSPHYYCEKCHYNEFDSPEVKAFAGGCGFDMPDKVCPN 983

Query: 400  ---------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
                     F + FE FL       PD D++F  D + +  +Y +  +G     +  T G
Sbjct: 984  CGETLVKAGFDIPFETFLGFKGDKEPDIDLNFSGDYQAKAHKYTEVLFGEGHTFKAGTIG 1043

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            +L  K A   V R          R C+                              +DR
Sbjct: 1044 TLADKTAFGYV-RNYYEERGHRKRKCE------------------------------IDR 1072

Query: 511  LLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEK 565
               I+    G+ R    H  GIV+      +++  P+     D+ +D+  T F+   I+ 
Sbjct: 1073 ---ITVGCTGIRRSTGQHPGGIVVLPHGHSINEFTPVQHPANDMTTDIITTHFDYHSIDH 1129

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL--------SLIPFDDHETYHLLTTKGT 617
              L+K D LG    T+++   +++    +  +         + IP DD +   L      
Sbjct: 1130 -NLLKLDILGHDDPTMIRTLEEYITSDAMDNEYNDENPFIATEIPLDDKKVLSLFHDTSA 1188

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG--------KE 669
            LGI   +  G      G+     + +I +V   +P  + +++  +   +G        +E
Sbjct: 1189 LGIKPEDIDGCNLGCLGIPEFGTDFVIQMVQDAKPQSLSDLIRISGLSHGTNVWLGNAQE 1248

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-EEMDKQ 728
             + S    I   +     ++IY    +    + S  S +  + +R+  G K + EE  K+
Sbjct: 1249 LVKSGKATISTCICTRDDIMIY----LINQGVDSALSFTIMESVRKGKGLKPEWEEAMKE 1304

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K+                 + +    K   Y F K+HAAAY +++Y+ A+ K +YP+ + 
Sbjct: 1305 KD---------------VPDWYIWSCKQISYMFPKAHAAAYVMMAYRIAYCKINYPLAYY 1349

Query: 789  AA---------------------------------SMTLEMDNVEKIKKFCQDARQFNIQ 815
             A                                 S++ +  +V K  K  Q+      +
Sbjct: 1350 GAYFGIRANAFSYEIMCQGKDKLNYYIKDYKRRADSLSNKEQDVVKDMKIVQEMYARGYE 1409

Query: 816  IMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
             +P  + T     F++ D ++   L++I+G+G   A  + EA+ D P+ SL+DF  R   
Sbjct: 1410 FLPLDIYTAKATKFQIIDGKLMPPLSSIEGMGEKAAEAVEEAAKDGPYLSLDDFRQRT-- 1467

Query: 875  KKLNRRVLESLVFAGALDCFG 895
             K+++ V++   F   L  FG
Sbjct: 1468 -KVSKTVID---FMADLGLFG 1484


>gi|253682892|ref|ZP_04863680.1| DNA Polymerase III alpha chain [Clostridium phage D-1873]
 gi|253560906|gb|EES90367.1| DNA Polymerase III alpha chain [Clostridium phage D-1873]
          Length = 810

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 145/748 (19%), Positives = 320/748 (42%), Gaps = 88/748 (11%)

Query: 99  IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
           I+L+    +G++ +  ++S   L     +  RI    +  +  + +I+ T   +G +   
Sbjct: 86  IILIALNRDGFKDINRIISEANLSGYYYKP-RIDKELILSLNPKNVIVTTACIAGRL--- 141

Query: 159 FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSL 218
             F +    EK ++     F D  Y+ +Q H+    Y + Q+++L + + L L+  N+S 
Sbjct: 142 --FKTKDYEEKFVIPLLNHFKDHFYLEVQSHKQQSEYNK-QILELKFKYNLSLIHANDSH 198

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS--------DLPEA 270
           ++   D +  D+ +       +  +D      D+   N  E+V  +          + E+
Sbjct: 199 YIHSRDAKYRDMFLKAKG---IIYEDEGGFILDY--PNYDEIVERYEKQGVLNKEQIQES 253

Query: 271 LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
           L NT+ I  +C  +       +P+        + K++++    K +   E +  +  I +
Sbjct: 254 LNNTL-IFDKCEDLKFDKEIKIPK--------VHKDKDSNKLLKTIISNEWKKERNNICR 304

Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA--KKNNIPVGPGRGSGAGSVTAY 388
                +Y + +  E++++ +     YF++  + ++ A  +   +    GRGS        
Sbjct: 305 D-KWNEYEKAIKEEVDIVQKTNMEDYFILDYEIVKKAVDEYKAVLTRTGRGSAPSFYINK 363

Query: 389 ALTITDIDPLR--FSLLFERFLNPDRM----SMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            L  T+ID +    +L   RF++  R+    S+PD D+++     + VI+  ++  G + 
Sbjct: 364 LLGFTNIDRVSAPITLYPTRFMSTTRILQTRSLPDIDLNWAN--IEPVIKSSKDILGEDG 421

Query: 443 VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
           V  +I +  LQ  +A R   ++     ++ + + K +              DD       
Sbjct: 422 VYFMIAYKPLQNSSAFRLWCKSKGFNINEYNEIAKNL--------------DD------Y 461

Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT--QFNM 560
           + D    +++E S+   G+    +      ++ D+P+S+ + + + V + +      +N 
Sbjct: 462 IEDEKWGKIIEESKIFRGVIESVAPSPCSFLLLDKPISEEIGLIK-VGNQICCCLDGYN- 519

Query: 561 KWIEKAGLIKFDFLGLKTLTLLQK-------SLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
              ++   +K D+L +   +++ K        +D + Q   KVD        ++ ++L  
Sbjct: 520 --CDQYKYLKNDYLTVSVWSIISKVYEMIREPIDTIQQLENKVD--------YKVWNLYK 569

Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              T  + Q +S+     ++   P  I +I A V+  RPG    +  +  RK     +  
Sbjct: 570 LGLTATLNQADSNYATPLIKKYSPKSIAEISAWVASIRPGFASLMSNFLERKPYTTGVKE 629

Query: 674 IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE--ADVLRRAMGKKIKEEMDKQKER 731
           +    D +L+++   ++YQE +M+    L G +  E    + + A  K  ++E++  KE+
Sbjct: 630 L----DNLLQDSYHYMMYQESIMKYLVWL-GIAEDETYGIIKKIAKKKFKEKELEALKEK 684

Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            + G  KN   K    N ++++   + Y FN SH+ +  + S   A++K +YP+E+    
Sbjct: 685 LLKGWIKNVGKKEGFENTWQVVNDASKYSFNASHSLSVGIDSLYGAYLKANYPLEYYTVV 744

Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           + +   + E+  K   +   FNI I+ P
Sbjct: 745 LNMYEGDTEETSKIVDELNYFNITILSP 772


>gi|222872380|gb|EEF09511.1| predicted protein [Populus trichocarpa]
          Length = 177

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/149 (34%), Positives = 88/149 (59%), Gaps = 12/149 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL++H+ +S+++G   +N I+   A D Q A+A+TD NNLF  ++F ++  A G++P+
Sbjct: 19  FVHLRLHTEFSVVDGTNRINAIVKAAAEDGQVALAVTDFNNLFGGVKFYREGRAKGVKPV 78

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G ++ I+ ++              V  I++LV +  GY  L EL++R +  +  K    
Sbjct: 79  LGAEIQIEGENG-----------AAVSRIIVLVQSPLGYHNLSELLARGWTRNVVKGQAV 127

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
              +WLQE+G EGLI+L G  +GP+ +A 
Sbjct: 128 HTWAWLQELG-EGLIVLAGAQAGPVGQAL 155


>gi|289550944|ref|YP_003471848.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
            HKU09-01]
 gi|315658446|ref|ZP_07911318.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
 gi|289180476|gb|ADC87721.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
            HKU09-01]
 gi|315496775|gb|EFU85098.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
          Length = 1438

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 199/935 (21%), Positives = 350/935 (37%), Gaps = 232/935 (24%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   EG + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLSNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVKYYYRTPRIPRSLLDEF-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDR 194
            EGL++ T    G +  A         EK    +         L+ D L   L R      
Sbjct: 655  EGLLIGTACDEGELFTAVMQRDQSEVEKVANYYDFIEVQPPALYQDLLDRELIRDTATLH 714

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                ++++      +P++AT N+ +L+E D  A  +L+A      +++   P+     + 
Sbjct: 715  EIYQRLLKAGEQANIPVIATGNAHYLNEHDGIARKILIASQPGNPLNRSTLPKA----HF 770

Query: 255  KNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPIL-PRFIEKECDDIQKEE 307
            +   EM+  F  L E       ++NT  +A R   ++ +   +  PR           E 
Sbjct: 771  RTTDEMLDEFHFLGEEKAYEIVVKNTNALADRIERVVPIKDQLFTPRM----------EG 820

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADF 363
             NE         E+R    + AK  + +D  Q    RL+ EL  I    F+  +LI    
Sbjct: 821  ANE---------EIRELSYSNAKKLYGEDLPQIVIDRLEKELASIIGNGFAVIYLISQRL 871

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------RFS 401
            ++ + ++   VG  RGS   S  A    IT+++PL                       F 
Sbjct: 872  VKKSLEDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPQCKTSEFFNDGSVGSGFD 930

Query: 402  LL-------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            L                    FE FL      +PD D++F  + +     Y +  +G ++
Sbjct: 931  LPDKKCETCGSELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFGEDK 990

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            V +  T G++  K A   V   L               ND       Q I         R
Sbjct: 991  VFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI-------HKR 1021

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV------- 555
             A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+       
Sbjct: 1022 GAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPADDQ 1068

Query: 556  ------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
                  T F+   I    ++K D LG    T+++   D        +D   IP DD ET 
Sbjct: 1069 NSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDKETM 1122

Query: 610  HLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             + ++               GT G+ +  +  +RQ LE  +P    +++ +  L     +
Sbjct: 1123 KIFSSPETLGVTEEDILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGTDV 1182

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
                           + +   L+   + +  GVI  ++ +M +  + +G        L  
Sbjct: 1183 --------------WLGNAQELVRSGICDLSGVIGCRDDIM-VYLMYAG--------LEP 1219

Query: 716  AMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +M  KI E + K K   +  I    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1220 SMAFKIMESVRKGKGLTDEMIETMKENNVPDWYLDSCLKI-----KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIKKFCQDA-------------- 809
            + + A+ K H+P+ + AA  T+          + + E IK   +D               
Sbjct: 1275 AVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKESIKNTVKDMYARYMELGKKEKDV 1334

Query: 810  ------------RQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                        R F++Q  P S+  +   DF +  + +     A+ G+G   A+ I+EA
Sbjct: 1335 LTVLELVNEMAHRGFSMQ--PISLEKSQAFDFIIEGDSLIPPFIAVPGLGENVAQRIVEA 1392

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             ++ PF S ED   +     L++++++ L   G+L
Sbjct: 1393 RSEGPFLSKEDLNKKA---GLSQKIIDYLDDLGSL 1424


>gi|154250388|ref|YP_001411213.1| DNA polymerase III PolC [Fervidobacterium nodosum Rt17-B1]
 gi|154154324|gb|ABS61556.1| DNA polymerase III, alpha subunit [Fervidobacterium nodosum Rt17-B1]
          Length = 1390

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 164/798 (20%), Positives = 311/798 (38%), Gaps = 181/798 (22%)

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            Q+     +P+V  +N+ F+  ED +A  VL+A        Q +      ++YL+   EM+
Sbjct: 676  QVGKELNMPVVMVSNAHFIDPEDIKARKVLLA-------PQSNIEDEEANYYLRTTQEMI 728

Query: 262  ----SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
                 IF D   A E  V+  ++ + ++    P+                E +L    + 
Sbjct: 729  DAALEIFEDEQIAKEVVVDNPKKIANMIDTIQPL----------------EKKLHPPKIE 772

Query: 318  GLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            G E +L      K Y        +   +R++ ELN I    ++  ++I    ++ A ++ 
Sbjct: 773  GAEEKLRTMTYEKAYQLYGNPLPEIVEKRIEKELNSIIGHGYAVLYMIAHLIVKKAGEDG 832

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLN----PDRM----- 413
              VG  RGS   S+ A+ + IT+++PL         ++  L E F +    PD++     
Sbjct: 833  YVVG-SRGSVGSSLVAHLVGITEVNPLPAHYRCPDCKYFELHEEFGSGYDLPDKLCPKCG 891

Query: 414  ---------------------SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
                                  +PD D++F  + ++   ++++  +G  +V +  T  ++
Sbjct: 892  AKLEKVGQDIPFEVFMGFEGDKVPDIDLNFSGEYQERAHKFIEELFGKSKVFRAGTISTI 951

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
              ++A+  V   ++      D+   ++  +P +P      A+  R               
Sbjct: 952  ADRSAIGYVKAYME------DKNGNIV--NPLNP------AEQER--------------- 982

Query: 513  EISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAG 567
             ++  + G+ R    H  G++I   +  +    P      D +S +  T F  ++I    
Sbjct: 983  -LTMYVTGVKRTTGQHPGGLMIVPNEYEIYDFTPFQHPANDKKSGVYTTHFAYEFIHD-D 1040

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            LIK D LG    T+++   ++       +D   IP DD +T  + ++   LG+   E  G
Sbjct: 1041 LIKLDALGHDDPTMIRLLYEYSG-----IDPMTIPMDDKKTISIFSSTKALGV-DPEELG 1094

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQ 686
                  G+     + ++ ++   RP     +V  +   +G +  + +   LI+  +    
Sbjct: 1095 TDVGTIGIPEFGTDFVMGMLRETRPKTFAELVRISGLSHGTDVWLGNAQTLINKKIATLS 1154

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEA----DVLRRAMGKKIKEEMDKQKER-----FISGAS 737
             VI  ++ +M I  +  G   S A    + +R+  G K +EE++  KE      FI    
Sbjct: 1155 DVISCRDDIM-IYLIHKGVPHSNAFKIMENVRKGKGLK-EEEINIMKEHNVPDWFIESCQ 1212

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            K                    Y F K+HA AY  ++++ A+ K HYP+ F AA  + + D
Sbjct: 1213 K------------------IKYLFPKAHAVAYVSMAFRIAYFKVHYPLAFYAAYFSTKGD 1254

Query: 798  NV---------EKIKK--------FCQDARQFN--------IQIMPPSVNTPCVDFKVGD 832
                       E IKK          +D ++ N        ++++         D K  D
Sbjct: 1255 EFDAELILKGKEAIKKRLVELAASMKKDVKEKNEEKVLQAALEMLLRGYGFKKPDLKRSD 1314

Query: 833  NR--------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
             +        +      I G+G   A  I+E  A+KP+ S+ED  +R    K    VL+ 
Sbjct: 1315 AKRFIIDGKDLLIPFNKIHGIGENVANSIVEKRAEKPYTSIEDLMNRARVTKAQVEVLKR 1374

Query: 885  LVFAGALDCFGYSRMQLL 902
            +   G LD    +   +L
Sbjct: 1375 I---GVLDGLPETDQAML 1389


>gi|160903239|ref|YP_001568820.1| DNA-directed DNA polymerase [Petrotoga mobilis SJ95]
 gi|160360883|gb|ABX32497.1| DNA-directed DNA polymerase [Petrotoga mobilis SJ95]
          Length = 989

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 202/915 (22%), Positives = 344/915 (37%), Gaps = 239/915 (26%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS  S     L +  ++D +++  Q A+AITD  N+     F + A   GI+ I 
Sbjct: 129 VELHAHSKMSSKLSILGMEELVDAVSSFGQKAVAITDNENVQIIPYFYEYAKRKGIKAIF 188

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           GC+L      N+    +G      V  + +LV   EG + L +++S  ++    K ++ I
Sbjct: 189 GCEL------NVHDERRG-----IVKHVNVLVKNKEGLKNLYKIISISHMNVVNKSAI-I 236

Query: 132 CLSWLQEIGTEGLIMLTGGSS--GPIDRAFFFNSSQVAEKRLLTF---KKLFGDRLYVNL 186
            LS L+ +  +GL++   GSS  G +  ++    S    K  +TF    +LF    Y +L
Sbjct: 237 SLSDLKNL-RKGLLL---GSSLDGFLLYSYLNKYSTNDLKEWITFFDYIELFPMNCYNDL 292

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
              +G        V ++A     P+V + +  +L EED E    L A+   T    K R 
Sbjct: 293 CLEKGKIIDYSRTVYEIAKDVRKPVVMSGDVHYLREEDRE---YLNAMIVGTSTKSKPRK 349

Query: 247 RVTPDHYLKNRSEM----VSIFSDLPEALENTV--------EIARRCSFILQVHAPILPR 294
            V   +Y ++ S+M      IF     A E  V        EI     F  ++ AP +P 
Sbjct: 350 TVRSVNYFRSTSQMYDEAFEIFKKRGIAKEIVVKNTNKIAGEIEELAPFDFKLKAPYIP- 408

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR---QRLDFELNVIARM 351
                        +  LR+   +  + R         Y  + +R    R++ EL  I   
Sbjct: 409 -----------SADQNLRDIVYSNAKKR---------YGEKLHRIIIDRIEKELKSIVDN 448

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------- 398
            ++  FLI AD ++ + +   P+G  RGS   S+ A+ L IT+++PL             
Sbjct: 449 GYAVIFLISADMVEKSLEMGYPIG-SRGSVGSSLVAFLLGITEVNPLPPHYFCESCGFIE 507

Query: 399 ---------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
                                        ++ FE F+      +PD D++F  +   ++ 
Sbjct: 508 FVENLNLSGFDLKEKSCPNCGAILNSDGHNIRFEVFMGYSGEKIPDIDVNFSAEIFTDIQ 567

Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
           R+++ K+G     +  T  ++    A++                           ++L  
Sbjct: 568 RFLEEKFGRNYCYKAGTISTISRYNAMK---------------------------MALNY 600

Query: 492 IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
             D+         D +   L  ISQK++G   +   H + ++I        +P   DV  
Sbjct: 601 FKDE---------DMNFAHLFWISQKIKGTKLNTGQHPSAMII--------IPQEYDVHD 643

Query: 552 DLP-------------VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD----------- 587
             P              T ++ K +E   L+K D L     T L+   D           
Sbjct: 644 FTPYQYSANSPEIGIVTTHYDFKALEN-DLLKIDVLSHDGPTFLKMLKDLTGYDYNDISM 702

Query: 588 --------FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
                   F + + + VDLS I           T  GTLG+ ++ +    + L   +P+ 
Sbjct: 703 HDERILSLFSSTKELGVDLSEIG----------TEIGTLGVPEVWTPFSHKMLTETKPET 752

Query: 640 IEDIIALVSLYRPGPIDNIVVYNNRKN-------GKEKIVSIHPLIDPMLKETQGVIIYQ 692
             D+    SL     I     +NN +        G ++IVS    I   L E  GV   +
Sbjct: 753 FYDLCRTNSLAHGTDI----WFNNAREIVLKNVAGIDQIVSCRDDILTTL-EYFGVEP-K 806

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
              M + ++  G  L+E         K++K   D +   +   + K              
Sbjct: 807 TAFMVMEKVRKGKELTE---------KELKAIDDSEAPEWYLDSLKK------------- 844

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE---------MD---NVE 800
                 Y F K+HA AY +++Y+ A+ K +YP+EF +   T+          MD    V+
Sbjct: 845 ----IHYLFPKAHAVAYMIMAYKIAFYKLYYPLEFYSVYFTIRARFFDIDIIMDEDLTVK 900

Query: 801 KIKKFCQDARQFNIQ 815
            IKK  ++  Q N +
Sbjct: 901 TIKKLSKNEYQHNYE 915


>gi|237749593|ref|ZP_04580073.1| predicted protein [Helicobacter bilis ATCC 43879]
 gi|229374811|gb|EEO25202.1| predicted protein [Helicobacter bilis ATCC 43879]
          Length = 175

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 6/179 (3%)

Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
           F+   +T  + N EK+ ++  +A+   + ++ PS+N     F V +  + YSL A+KGVG
Sbjct: 1   FMCGLLTSAIGNEEKLAQYIYEAKGKGLNVLGPSINKSGYPFFVENGALRYSLRAVKGVG 60

Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               + I  A  +KPF  L DFC R   K +NR+ +E+L+FAGA+D FG +R  LL S+D
Sbjct: 61  IAAVKEIYRARKEKPFADLFDFCVRTSVKSVNRKTIEALIFAGAMDEFGENRATLLASVD 120

Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSSVRFENEQRVLGFYFS 964
              ++A+    +  N     F  E  T   K    E+  + +      +E+  LG YFS
Sbjct: 121 VALEHAELFAGD--NDQLGFFLDEGLTIKPKYAETEEMPLVD---LLAHEKETLGIYFS 174


>gi|329724322|gb|EGG60834.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis VCU144]
          Length = 1438

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 204/935 (21%), Positives = 350/935 (37%), Gaps = 232/935 (24%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+TN+          + L+V   EG + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVKYYYRTPRIPRSLLNEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL-QRHRGYDRYRES 198
            EGL++ T    G +  A         EK  +   F ++    LY +L  R    D    +
Sbjct: 655  EGLLIGTACDEGELFTAVMQKDQSEVEKIAKFYDFIEVQPPALYQDLMDRELIRDNETLT 714

Query: 199  QV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            Q+    +    +  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 715  QIYKRLIDAGKSANIPVIATGNAHYLYEHDAIARKILIA-------SQPGNPLNRSTLPE 767

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + +   EM+  F  L E       + NT E+A +   ++    PI  +      D    
Sbjct: 768  AHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELANKIEKVV----PIKDKLFTPRMDG--- 820

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVA 361
                       A  E+R    + AK  + +D  Q    RL+ EL+ I    FS  +LI  
Sbjct: 821  -----------ANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSIIGNGFSVIYLISQ 869

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------R 399
              ++ +  +   VG  RGS   S  A    IT+++PL                       
Sbjct: 870  RLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFDDGSVGSG 928

Query: 400  FSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
            F L                    FE FL      +PD D++F  + +     Y +  +G 
Sbjct: 929  FDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFGE 988

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            ++V +  T G++  K A   V   L               ND       Q I        
Sbjct: 989  DKVFRAGTIGTVAEKTAFGFVKGYL---------------ND-------QGI-------H 1019

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----- 555
             R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+     
Sbjct: 1020 KRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQFPAD 1066

Query: 556  --------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                    T F+   I    ++K D LG    T+++   D        +D   IP DD E
Sbjct: 1067 DQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDKE 1120

Query: 608  TYH--------------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            T                +L   GT G+ +  +  +RQ LE  +P    +++ +  L    
Sbjct: 1121 TMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGT 1180

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               ++ + N ++  ++ I  +  +I         +++Y    +  A L    +    + +
Sbjct: 1181 ---DVWLGNAQELIRQGICDLSSVIGC----RDDIMVY----LMYAGLEPSMAFKTMEFV 1229

Query: 714  RRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            R+  G+ + +EM +  KE  +     +   K               Y F K+HAAAY ++
Sbjct: 1230 RK--GRGLTDEMVEAMKENNVPDWYLDSCRKI-------------KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDA-------------- 809
            + + A+ K H+P+ + AA  T+   + +          I+   +D               
Sbjct: 1275 AVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1334

Query: 810  ------------RQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                        R F +Q  P S+  +   DF +  + +     ++ G+G   A+ I+EA
Sbjct: 1335 LTVLEIMNEMAHRGFRLQ--PISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEA 1392

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              + PF S ED   +     L+++V++ L   G+L
Sbjct: 1393 REEGPFLSKEDLNKKA---GLSQKVIDYLDELGSL 1424


>gi|267798811|gb|ACY79086.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 203

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 107/215 (49%), Gaps = 16/215 (7%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD   L   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTILCGLVKFYSTAHNCGVKPIIGADF----------TLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLV 212
            RA    + Q  E+ +  ++  F D  Y+ L R    D   ES +   + +A  ++LP+V
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLHFALDVAEQYDLPVV 167

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           ATN  +F++EE +EAH++ +A+     +    RP+
Sbjct: 168 ATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPK 202


>gi|260890306|ref|ZP_05901569.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
 gi|260859926|gb|EEX74426.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
          Length = 1151

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 200/965 (20%), Positives = 372/965 (38%), Gaps = 207/965 (21%)

Query: 57   EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            +F     + GI  +I  +++ D+Q N++ +    T        ++LV    G + L ELV
Sbjct: 274  KFLNMILSKGILKLI--EINTDLQPNIQNSETLNT--------MILVKNQAGLRDLYELV 323

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-QVAEKRLLTFK 175
            SR  +   G +  RI  + L  +  E L++ +  S+   ++    N   + AEK  +  K
Sbjct: 324  SRSNIEFFGMRRPRIPKTLLNSM-RENLLIASSASASERNKGELVNLYLRGAEKDDIEEK 382

Query: 176  KLFGDRLYVNLQRHRGYDRYRESQVVQL----------AYTHELP------LVATNNSLF 219
              F D  Y+ +  H  Y    E    ++           Y +EL       +VAT ++ +
Sbjct: 383  ARFYD--YIEIHPHTNYADMVEKTSKEIESYDIIKEMNKYFYELGKSQNKIVVATGDTHY 440

Query: 220  LSEEDYEAHDVLM---AVAHSTVVSQKDRPRVTPDH--YLKNRSEMVSIFSDLPE--ALE 272
            L E +    +VL+        T  S+  R     D   Y K   E++  F+ L E  A E
Sbjct: 441  LEEREAINRNVLLLGSGTMWKTETSEGVRGYEFFDRKLYFKTTEEILESFNYLGEEAAQE 500

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
              VE   + + +++   PI   F   + +      E+E+R    + L+    +       
Sbjct: 501  VVVENTHKINDMIEQVRPIPTGFYPPKIEGA----EDEVRKMTYSKLKELYGENI----- 551

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
               D ++R++ ELN I +  F+  +LI    +  +      VG  RGS   S+ AY + I
Sbjct: 552  -DPDLKERVEKELNSIIQNGFAVLYLIAQKLVHKSVDAGYLVG-SRGSVGSSIVAYLMGI 609

Query: 393  TDIDPLR---------------------------------------FSLLFERFLNPDRM 413
            T+++ L                                         ++ FE F+  +  
Sbjct: 610  TEVNGLYPHYRCPKCKHTEFMNEEGSGVDYPDKNCPECGTKYIKDGHAIPFEVFMGFNGD 669

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
             +PD D++F  + + E+ +Y +  +G + V +  T  +L  K A           +  V 
Sbjct: 670  KVPDIDLNFSGEYQGEIHKYTEELFGSDNVFRAGTISTLAEKNA-----------FGYVK 718

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            +  + +   P           + + R+A         ++ I++  EG  +    H  G++
Sbjct: 719  KYLEEVEGTP-----------EIKERKA--------EVMRIAKGCEGARKTTGQHPGGMI 759

Query: 534  I--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            +   D+ +    P+ R   D+++    T F+   +++  L+K D LG    T L+     
Sbjct: 760  VVPKDKSIYDFCPIQRPANDMKATSKTTHFDYHVMDEQ-LVKLDILGHDDPTTLR----- 813

Query: 589  LAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEG 634
            + Q    VD+  IP DD E   L               +  GT GI +  +S ++Q L  
Sbjct: 814  ILQDLTGVDIYTIPLDDKEVMSLFSGTEALSVTPDEIGSPTGTSGIPEFGTSFVKQMLVD 873

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
             +P    +++ +  L         V  NN ++           +   +     +I  ++ 
Sbjct: 874  TRPKTFAELVRISGLSH----GTDVWLNNAQD----------YVRSGIATLSQIITVRDD 919

Query: 695  VMQIA---QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            +M       L    + S  + +R+    K +E+     + +     ++G+ +    +  +
Sbjct: 920  IMNKLIDDGLDKSLAFSIMEFVRKGQPTKNREKW----QEYSKTMKEHGVEQWYIDSCEK 975

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA---------SMTLEMDNVEKI 802
            +      Y F K HA AY +++ + A+ K HYP+EF  A          MT     VE++
Sbjct: 976  I-----KYMFPKGHAVAYVMMAVRIAYFKVHYPIEFYTAFLNRKVGDFKMTTMFRPVEEL 1030

Query: 803  KKFCQDA-RQFN---------------IQIMPPSVNTPCVD--------FKVGDNRIYYS 838
            K+   +  R+ N               I++    +    +D        F + D +I   
Sbjct: 1031 KRAKMEMDRKGNLNAKEKQELFLYEILIEMHYRKIELEQIDIYKSEAKLFTIQDGKIRMP 1090

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L A+ G+G   A +I+ E   D  F S+ED   R    KLN+ ++E +   G L     +
Sbjct: 1091 LIAMDGLGEAVAENIVSERKVD--FLSIEDLVKRT---KLNKTIVELMKEYGCLKDLSAT 1145

Query: 898  RMQLL 902
              Q L
Sbjct: 1146 NQQTL 1150


>gi|314933443|ref|ZP_07840808.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            caprae C87]
 gi|313653593|gb|EFS17350.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            caprae C87]
          Length = 1442

 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 201/938 (21%), Positives = 353/938 (37%), Gaps = 232/938 (24%)

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
            ++ N K+TN+          + L+V   EG + L ++VS   L+    ++ RI  S L E
Sbjct: 598  LEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVKYYYRTPRIPRSLLNE 656

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQRH---RGYD 193
               EG+++ T    G +  A         EK  +   F ++    LY +L      R ++
Sbjct: 657  Y-REGILVGTACDEGELFTAVMQKDQSEVEKIAKYYDFIEVQPPALYQDLMDRELIRDHE 715

Query: 194  RYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT 249
               E   ++++   +  +P++AT N  +L E D  A  +L+A       SQ   P  R T
Sbjct: 716  TLTEIYQRLIEAGESANIPVIATGNVHYLYEHDAIARKILIA-------SQPGNPLNRST 768

Query: 250  -PDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             P+ + +   EM+  F  L E       + NT E+A R   ++ +   +    +E   D 
Sbjct: 769  LPEAHFRTTDEMLDEFHFLGEEKAHEIVVRNTNELAERIERVVPIKDKLFTPRMEGAND- 827

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFL 358
                             E+R    + AK  + +D  Q    RL+ EL  I    FS  +L
Sbjct: 828  -----------------EIRELSYSNAKKLYGEDLPQIVIDRLEKELASIIGNGFSVIYL 870

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL-------------------- 398
            I    ++ +  +   VG  RGS   S  A    IT+++PL                    
Sbjct: 871  ISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFDDGSV 929

Query: 399  --RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
               F L                    FE FL      +PD D++F  + +     Y +  
Sbjct: 930  GSGFDLPDKKCPTCGNDLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVL 989

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G ++V +  T G++  K A   V   L               ND       Q I     
Sbjct: 990  FGEDKVFRAGTIGTVAEKTAFGFVKGYL---------------ND-------QGI----- 1022

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-- 555
                R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+  
Sbjct: 1023 --HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQF 1067

Query: 556  -----------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                       T F+   I    ++K D LG    T+++   D        +D   IP D
Sbjct: 1068 PADDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVD 1121

Query: 605  DHETYH--------------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            D +T                +L   GT G+ +  +  +RQ LE  +P    +++ +  L 
Sbjct: 1122 DKDTMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTYSELVQISGLS 1181

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
                  ++ + N ++  ++ I  +  +I         +++Y    +  A L    +    
Sbjct: 1182 HGT---DVWLGNAQELIRQGICDLSSVIGC----RDDIMVY----LMYAGLEPSMAFKTM 1230

Query: 711  DVLRRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + +R+  G+ + +EM +  KE  +     +   K               Y F K+HAAAY
Sbjct: 1231 EFVRK--GRGLTDEMVEAMKENDVPDWYLDSCRKI-------------KYMFPKAHAAAY 1275

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDA----------- 809
             +++ + A+ K H+P+ + AA  T+   + +          I+   +D            
Sbjct: 1276 VLMAVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKE 1335

Query: 810  ---------------RQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
                           R F +Q  P S+  +   DF + ++ +     A+ G+G   A+ I
Sbjct: 1336 KDVLTVLEIMNEMAHRGFRMQ--PISLEKSQAFDFIIEEDTLIPPFVAVPGLGENVAKRI 1393

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +EA  + PF S ED   +     L+++V++ L   G+L
Sbjct: 1394 VEAREEGPFLSKEDLNKKA---GLSQKVIDYLDEMGSL 1428


>gi|310779125|ref|YP_003967458.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926]
 gi|309748448|gb|ADO83110.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926]
          Length = 1442

 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 187/909 (20%), Positives = 348/909 (38%), Gaps = 196/909 (21%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM-----LTGGSS 152
            +++LLV    G + L +LVS  ++   G +  RI  S ++E   EG+I+     +  G+ 
Sbjct: 605  NVMLLVKNNTGLKNLYKLVSEAHINYYGSKKPRIPRSIIEE-NREGIIIGAAMSMHFGNE 663

Query: 153  GPIDRAFF-FNSSQVAEK-RLLTFKKLFGDRLYVNLQRHRG------YDRYRESQ--VVQ 202
            G +  A+F +N   + EK     + +L     Y  L    G      +D   ++   + +
Sbjct: 664  GELASAYFRYNLDCIDEKINFYDYIELQPRETYTELYEKEGTGTISSFDNIEKANKSLYK 723

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            LA +    ++AT+N  +L EED+    +L+  + S  V ++ +       Y ++ +EM+ 
Sbjct: 724  LAKSKGKKVIATSNVHYLDEEDHRVRSILLYGSGS--VFREKQYNSDNKFYFRSTNEMLR 781

Query: 263  IFSDLPEALENTVEIARRCSFILQVHA--PILPRFIEKECDDIQKEEENELRNKAVAGLE 320
             FS L E +   + I    +   +V    P+   F   + D+ ++  +    NKA     
Sbjct: 782  EFSYLGEDVAREIVIESTNAIADEVEKIQPVPSGFFPPKIDNAEEIVKEMTYNKAY---- 837

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                   I      +   QRL+ EL  I    FS  +L     ++ +  N   VG  RGS
Sbjct: 838  ------KIYGNPLPEIVAQRLERELKAIVGNGFSVLYLSAQKLVKESLDNGYLVG-SRGS 890

Query: 381  GAGSVTAYALTITDIDPL-----------RFS---------------------------- 401
               S+ A+ + IT+++ L           R+S                            
Sbjct: 891  VGSSLVAFMMDITEVNALYPHYICVDENCRYSEFMDKEGAGVDLPDKICPKCGKELKKEG 950

Query: 402  --LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE F+  +   +PD D++F  + + E+ RY +  +G E V +  T  +L  K A  
Sbjct: 951  HAIPFEVFMGFNGDKVPDIDLNFSGEYQSEIHRYCERLFGKENVFKAGTISTLAEKNAYG 1010

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V +  +                  H +S+         R A         ++ +++K E
Sbjct: 1011 YVKKYFE-----------------EHNISV---------RNA--------EIIRLAKKCE 1036

Query: 520  GLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            G  +    H  G+++      + +  P+ +   D +++   T F+   +++  L+K D L
Sbjct: 1037 GAKKTTGQHPGGMIVVPQGHSIYEFCPVQKPANDAKNESITTHFDYHVMDEQ-LVKLDIL 1095

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGI 620
            G    T ++     L Q    VD+  +P  D ET  + +                GT G+
Sbjct: 1096 GHDDPTTIK-----LLQEYTGVDIYDVPLADPETLKIFSGTESLGVTPDQINSVIGTYGV 1150

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR----KNGKEKIVSIHP 676
             +  +  +RQ L    P    +++ +  L         V  NN     + G+  +  I  
Sbjct: 1151 PEFGTQFVRQMLVDTMPTTFAELVRISGLSHGTD----VWLNNAQEFVRKGEATLSEIIS 1206

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLL-SGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            + D ++       I +    +I + +  G    EAD  +    K +KE      + +I  
Sbjct: 1207 VRDDIMNYLIDSGIEKGTAFKIMEFVRKGRPSKEADAWKD-YSKLMKEH--NVPDWYIES 1263

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              +                    Y F K HA AY  ++ + A+ K H+P+ F AA ++ +
Sbjct: 1264 CRR------------------IKYMFPKGHAVAYVTMAMRIAYFKVHHPLAFYAAYLSRK 1305

Query: 796  MDNV------------EKIKKFCQ----DARQFN--------IQIMPPSVNTPCVD---- 827
             D+             EKI +  +    D RQ +        +++         +D    
Sbjct: 1306 ADDFDSEFMLSLNSVKEKIDELSKEMKLDVRQKSQLAVSEIILEMHARGFEFLGIDIYKS 1365

Query: 828  ----FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                F + D++I   L A+ G+G     ++++      F S ED   R    K ++ V+E
Sbjct: 1366 DGFKFTIEDDKIRIPLVALNGLGGAVVENVIKEREIGKFLSYEDLKRRT---KASQTVIE 1422

Query: 884  SLVFAGALD 892
             L    A+D
Sbjct: 1423 KLKIVNAID 1431


>gi|261885746|ref|ZP_06009785.1| DNA polymerase III subunit alpha [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 401

 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 84/152 (55%), Gaps = 21/152 (13%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
           +AAIKGVG      I++A  D PF+S++ F S+ D   +NRRV ESL+ +GA D FG++R
Sbjct: 1   MAAIKGVGVGAVEDIIKAREDGPFESVDSFISKTDCTTVNRRVFESLIKSGAFDDFGFTR 60

Query: 899 MQLLQSLDNI---QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE-- 953
             L+ +L+ I    K    ++KN TN            FSD  ++ + SV+  +++ E  
Sbjct: 61  KMLIHNLETIIENSKRISDIKKNATN----------SLFSDDDSMSEISVDLVNIKDEFD 110

Query: 954 ------NEQRVLGFYFSGHPLDVYKPILRKMG 979
                  EQ +LG Y SGHPLD Y+  + K+ 
Sbjct: 111 KKEILKFEQEILGVYVSGHPLDEYRDKIDKIN 142


>gi|225026305|ref|ZP_03715497.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353]
 gi|224956369|gb|EEG37578.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353]
          Length = 1484

 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 181/893 (20%), Positives = 331/893 (37%), Gaps = 198/893 (22%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++LV    G   L  LVS  +L D   +  R+  S +Q+   EGLI+ +   +G + +A 
Sbjct: 646  IILVKNETGRINLNRLVSASHL-DYFNRRPRMPESLIQKY-REGLILGSACEAGELFQAV 703

Query: 160  FFNSSQVAEKRLLTFKKLF-----GDRLYV---------NLQRHRGYDRYRESQVVQLAY 205
                S+     L+ F         G+ +++          ++  + Y+R    ++V+L  
Sbjct: 704  IRGKSEEELAELVRFYDYLEIQPIGNNMFMLESDRYEAKTVEDLQNYNR----KIVELGE 759

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
             +  P+VAT +  FL+ ED +   +LMA    +     D     P  Y +   EM+  F+
Sbjct: 760  RYHKPVVATCDVHFLNPEDEQYRRILMAGKGFS-----DADNQAP-LYFRTTEEMLEEFA 813

Query: 266  DLPEA------LENTVEIARRCSFILQVHAPILPRFIEKECDDIQK---EEENELRNKAV 316
             L EA      + NT +IA     I  VH    P  I K  + + K   ++ +E+    +
Sbjct: 814  YLGEAKAKEVVITNTNKIADMIEKISPVHPDKCPPVIPKSDETLTKICYDKAHEIYGPDL 873

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
              +                   +RL  ELN I    F+  ++I    +  +  +   VG 
Sbjct: 874  PDI-----------------VEERLQRELNSIISNGFAVMYIIAQKLVWDSNDHGYLVG- 915

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLL--------------------------------- 403
             RGS   S  A    IT+++PL    +                                 
Sbjct: 916  SRGSVGSSFVATMAGITEVNPLSAHYICPKCHYVDFDSDAVRPYSKKGMSGCDMPDRDCP 975

Query: 404  --------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                          FE FL       PD D++F  + + +  +YV+  +G  +  +  T 
Sbjct: 976  VCGTPLQKEGHDIPFETFLGFKGNKEPDIDLNFSGEYQSKAHKYVEVIFGEGKAFRAGTI 1035

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G+L  K A           Y  V                        ++ E R       
Sbjct: 1036 GTLAEKTA-----------YGYV-----------------------YKYFEERDIHKRRC 1061

Query: 510  RLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIE 564
             +  +++   G+ R    H  GI++   +  + +   +     DV +D+  T F    I+
Sbjct: 1062 EMERLAEGCTGVKRTTGQHPGGIIVVPHEHEIYEFTAIQHPANDVNTDIITTHFEYHSID 1121

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
               L+K D LG    T++++  D        +D + IP DD E   L  +   LGI   +
Sbjct: 1122 H-NLLKLDILGHDDPTMIRRLEDLTG-----MDATTIPLDDPEVMSLFHSTDILGITPED 1175

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLK 683
              G+     G+     E ++ ++    P    ++V  +   +G +  + +   LI+    
Sbjct: 1176 IGGIEMGSLGVPEFGTEFVMQMLKDTNPKCFSDLVRISGLSHGTDVWLGNAQTLIEEGKA 1235

Query: 684  ETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            E    I  ++ +M       L    S +  + +R+  GK +K E +++        + +G
Sbjct: 1236 EISTAICCRDDIMTYLINMGLDKEQSFTIMESVRK--GKGLKPEWEEE-------MTSHG 1286

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT------- 793
            +      + +    K   Y F K+HAAAY ++ ++ AW K H P+ + AA          
Sbjct: 1287 VP-----DWYIWSCKKIKYMFPKAHAAAYVMMGWRVAWFKVHKPLAYYAAYFGIRASAFS 1341

Query: 794  ----------LEMDNVEKIK-----------------KFCQDARQFNIQIMPPSV-NTPC 825
                      L++   E +K                 +  Q+      + MP  +     
Sbjct: 1342 YEIMCRGKERLDIALTELLKTPKDQQTKKDQDTIRDGRIAQEMYARGFEFMPIDIYKAKA 1401

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
             + ++ D +I   L++++G+G      + EA+   PF SLE+F ++    K N
Sbjct: 1402 RECQIIDGKIMPPLSSVEGLGDKACEQVEEAAKHGPFTSLENFRNQAKVSKTN 1454


>gi|224476387|ref|YP_002633993.1| DNA polymerase III PolC [Staphylococcus carnosus subsp. carnosus
            TM300]
 gi|222420994|emb|CAL27808.1| homolog of DNA polymerase III, alpha subunit [Staphylococcus carnosus
            subsp. carnosus TM300]
          Length = 1437

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 211/928 (22%), Positives = 349/928 (37%), Gaps = 248/928 (26%)

Query: 97   PS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS I +LV   +G + L ++VS   L+    ++ RI  S L E   EGL++ T    G +
Sbjct: 611  PSHITILVQNQDGLKNLFKIVSES-LVTYYYRTPRIPRSLLDEY-REGLLIGTACDEGEV 668

Query: 156  DRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQRHRGYDR--YRESQVVQLAYTHEL-- 209
              A         E+  +   + ++    LY +L      DR   R+++ ++  Y   L  
Sbjct: 669  FTAVMQKDQSQVERIAKYYDYIEVQPPALYQDL-----IDRELIRDNKTMEEIYERLLKA 723

Query: 210  ------PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PDHYLKNRSEM 260
                  P+VAT N  +L+E D  A  +L+A       SQ   P  R T P+ + +   EM
Sbjct: 724  GEAVNVPIVATGNVHYLNEHDSIARKILIA-------SQPGNPLNRSTLPEAHFRTTDEM 776

Query: 261  VSIFSDLPE------ALENTVEIARRCSFILQVHAPIL-PRFIEKECDDIQKEEENELRN 313
            +  F  L E       +ENT  +A R   ++ +   +  PR           E  NE   
Sbjct: 777  LDAFHFLGEEKAHEIVVENTQALADRIERVVPIKDKLYTPRM----------EGANE--- 823

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKK 369
                  E+R      A+  +  D  Q    RL+ EL  I    FS  +LI    ++ +  
Sbjct: 824  ------EIREMSYENARKLYGDDLPQIVIDRLEKELESIIGNGFSVIYLISQRLVKKSLN 877

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------RFSLL---- 403
            +   VG  RGS   S  A    IT+++PL                       F L     
Sbjct: 878  DGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPKCKKSEFFNDGSVGSGFDLPDKKC 936

Query: 404  --------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                          FE FL      +PD D++F  + + E   Y +  +G ++V +  T 
Sbjct: 937  ECGAEMIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPEAHNYTKVLFGEDKVFRAGTI 996

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++  K A   V   L               ND       Q I         R A+  VD
Sbjct: 997  GTVAEKTAFGYVKGYL---------------ND-------QGI-------HKRGAE--VD 1025

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------T 556
            RL+   +   G+ R    H  GI++        VP Y D+    PV             T
Sbjct: 1026 RLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPVQYPADDQSSPWMTT 1074

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT-- 614
             F+   I    ++K D LG    T+++   D        +D   IP DD ET  + +T  
Sbjct: 1075 HFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDKETMRIFSTPE 1128

Query: 615  ------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                         GT G+ +  +  +RQ LE  +P    +++ +  L     +       
Sbjct: 1129 SLGVTEEEIMCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGTDV------- 1181

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM--GKK 720
                    + +   L+     +  GVI  ++ +M +  + +G   S A  +  A+  GK 
Sbjct: 1182 -------WLGNAQDLVRSGTCDLSGVIGCRDDIM-VYLMYAGLEPSLAFKIMEAVRKGKG 1233

Query: 721  IKEEMDK-QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            ++EE ++  KE  +     +   K               Y F K+HAAAY +++ + A+ 
Sbjct: 1234 LQEEWEEVMKENNVPDWYLDSCKKI-------------KYMFPKAHAAAYVLMAMRIAYF 1280

Query: 780  KTHYPVEFLAASMTLE---------MDNVEKIKKFCQDA--------------------- 809
            K HYP+ + A+  T+          + + E IK   +D                      
Sbjct: 1281 KVHYPLYYYASYFTVRASDFDLITMIKDKEGIKTVVKDMYSKYMELGKKEKDVLTVLEIM 1340

Query: 810  -----RQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
                 R + +Q  P S+  +   +F +  + +     ++ G+G   A+ I+EA  + PF 
Sbjct: 1341 NEMAHRGYRMQ--PISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEAREEGPFL 1398

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            S ED   +     L+++V+E L   G+L
Sbjct: 1399 SKEDLNKKA---GLSQKVIEYLDELGSL 1423


>gi|197301360|ref|ZP_03166441.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC 29176]
 gi|197299517|gb|EDY34036.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC 29176]
          Length = 1517

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 179/906 (19%), Positives = 340/906 (37%), Gaps = 185/906 (20%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I++L     G   L +L+S  ++   G++  RI  S L E   EGL++ +   +G + +A
Sbjct: 673  IIILAKNDIGRYNLYQLISESHMTYYGRRP-RIPKSLLNE-HREGLVIGSACEAGELYKA 730

Query: 159  FFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRGYDRYRESQ-----VVQLAYTH 207
                        L  F   +       +R  +   + +  +   + Q     +V+L    
Sbjct: 731  ILEERPAETIAELADFYDYYEIQPIGNNRFMIGSSKVKNVNSEEDLQEINRKIVELGEQF 790

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
            + P+VAT +  FL  ED     ++MA          D     P  +L+   EM+  F+ L
Sbjct: 791  KKPVVATCDVHFLDPEDEVYRRIIMAGKGF------DDADTQPPLFLRTTDEMLEEFAYL 844

Query: 268  --PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
               +A E  ++  ++ + +++  +P+ P     +C  + ++ + ELR+     +  R A 
Sbjct: 845  GSAKAREVVIDNPQKIAKMIEKISPVNP----NKCPPVIQDSDQELRD-----ICYRKAH 895

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                +    Q    RL+ ELN I    ++  ++I    +  +  +   VG  RGS   S 
Sbjct: 896  EMYGEDLPVQ-VSSRLEKELNSIISNGYAVMYIIAQKLVWKSNADGYLVG-SRGSVGSSF 953

Query: 386  TAYALTITDIDPLR---------------------------------------------F 400
             A    IT+++PL                                              F
Sbjct: 954  VATMSGITEVNPLSPHYYCEKCHYSDFDSEEVRAFAGGCGYDMPDRMCPKCGAKLIKAGF 1013

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL       PD D++F  D + +  +Y +  +G     +  T G+L  K A   
Sbjct: 1014 DIPFETFLGFKGDKEPDIDLNFSGDYQAKAHKYTEVLFGEGHTFKAGTIGTLADKTAYGF 1073

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V    +    Q  R C+                              ++R   +++   G
Sbjct: 1074 VKNYYE-ERGQRKRRCE------------------------------IER---VTEGCTG 1099

Query: 521  LYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + R    H  GIV+      +++  P+     D+   +  T F+   I+   L+K D LG
Sbjct: 1100 IRRSTGQHPGGIVVLPHGHSINEFTPVQHPANDMECGITTTHFDYHSIDH-NLLKLDILG 1158

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSL--------IPFDDHETYHLLTTKGTLGIFQLESSG 627
                T+++   D++    +  + +         IP DD     L      LGI   +  G
Sbjct: 1159 HDDPTMIRTLEDYITSDAMPNEYNAEHPFIATEIPLDDKRVIELFHGTEVLGIKPEDIDG 1218

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG--------KEKIVSIHPLID 679
             +    G+     + +I +V   +P  + +++  +   +G        +E + S    I 
Sbjct: 1219 CKIGSLGIPEFGTDFVIQMVQDTKPQTLSDLIRISGLSHGTNVWLGNAQELVKSGTATIS 1278

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
              +     ++IY   + Q  +    +++ E+  +R+  GK +K E ++            
Sbjct: 1279 TAICTRDDIMIY--LINQGVESALAFTIMES--VRK--GKGLKPEWEE------------ 1320

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
             +      + +    K   Y F K+HAAAY +++Y+ A+ K +YP+ + AA  ++  D  
Sbjct: 1321 AMKAQNVPDWYIWSCKKISYMFPKAHAAAYVMMAYRIAYCKINYPLAYYAAYFSIRADAF 1380

Query: 800  ---------EKIKKFCQDARQFNIQIMPPSVNT-----------------PCVD------ 827
                     EK+  + +D ++ +  +     +T                   VD      
Sbjct: 1381 SYEIMCQGREKLDYYMKDYKRRSDTLTKKEQDTMKDMKIVQEMYARGFEFVPVDLYKAKA 1440

Query: 828  --FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
              F++ D ++  S A+I+G+G   A  + EA  D P+ SL+DF  R    K    ++  L
Sbjct: 1441 KMFQIVDGKLMPSFASIEGMGDKAAEAVEEAGKDGPYLSLDDFRQRTKVSKTVIDLMSEL 1500

Query: 886  VFAGAL 891
               G L
Sbjct: 1501 GLFGNL 1506


>gi|27467858|ref|NP_764495.1| DNA polymerase III PolC [Staphylococcus epidermidis ATCC 12228]
 gi|32469713|sp|Q8CPG6|DPO3_STAES RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|27315403|gb|AAO04537.1|AE016747_34 DNA polymerase III, alpha chain PolC-type [Staphylococcus epidermidis
            ATCC 12228]
          Length = 1442

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 203/935 (21%), Positives = 350/935 (37%), Gaps = 232/935 (24%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+TN+          + L+V   EG + L ++VS   L+    ++ RI  S L E   
Sbjct: 601  NKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVKYYYRTPRIPRSLLNEY-R 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL-QRHRGYDRYRES 198
            EG+++ T    G +  A         EK  +   F ++    LY +L  R    D    +
Sbjct: 659  EGILIGTACDEGELFTAVMQKDQSEVEKIAKFYDFIEVQPPALYQDLMDRELIRDNETLT 718

Query: 199  QV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            Q+    +    +  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 719  QIYKRLIDAGKSANIPVIATGNAHYLYEHDAIARKILIA-------SQPGNPLNRSTLPE 771

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + +   EM+  F  L E       + NT E+A +   ++    PI  +      D    
Sbjct: 772  AHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELANKIEKVV----PIKDKLFTPRMDG--- 824

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVA 361
                       A  E+R    + AK  + +D  Q    RL+ EL+ I    FS  +LI  
Sbjct: 825  -----------ANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSIIGNGFSVIYLISQ 873

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------R 399
              ++ +  +   VG  RGS   S  A    IT+++PL                       
Sbjct: 874  RLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFDDGSVGSG 932

Query: 400  FSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
            F L                    FE FL      +PD D++F  + +     Y +  +G 
Sbjct: 933  FDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFGE 992

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            ++V +  T G++  K A   V   L               ND       Q I        
Sbjct: 993  DKVFRAGTIGTVAEKTAFGFVKGYL---------------ND-------QGI-------H 1023

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----- 555
             R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+     
Sbjct: 1024 KRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQFPAD 1070

Query: 556  --------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                    T F+   I    ++K D LG    T+++   D        +D   IP DD E
Sbjct: 1071 DQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDKE 1124

Query: 608  TYH--------------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            T                +L   GT G+ +  +  +RQ LE  +P    +++ +  L    
Sbjct: 1125 TMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGT 1184

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               ++ + N ++  ++ I  +  +I         +++Y    +  A L    +    + +
Sbjct: 1185 ---DVWLGNAQELIRQGICDLSSVIGC----RDDIMVY----LMYAGLEPSMAFKTMEFV 1233

Query: 714  RRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            R+  G+ + +EM +  KE  +     +   K               Y F K+HAAAY ++
Sbjct: 1234 RK--GRGLTDEMVEAMKENNVPDWYLDSCRKI-------------KYMFPKAHAAAYVLM 1278

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDA-------------- 809
            + + A+ K H+P+ + AA  T+   + +          I+   +D               
Sbjct: 1279 AVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1338

Query: 810  ------------RQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                        R F +Q  P S+  +   DF +  + +     ++ G+G   A+ I+EA
Sbjct: 1339 LTVLEIMNEMAHRGFRLQ--PISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEA 1396

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              + PF S ED   +     L+++V++ L   G+L
Sbjct: 1397 REEGPFLSKEDLNKKA---GLSQKVIDYLDELGSL 1428


>gi|323441043|gb|EGA98750.1| DNA polymerase III PolC [Staphylococcus aureus O11]
          Length = 1436

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 206/937 (21%), Positives = 353/937 (37%), Gaps = 236/937 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 595  NKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 652

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQRHRGYDRYRES- 198
            EGL++ T    G +  A         EK  +   F ++    LY +L   RG  R  E+ 
Sbjct: 653  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDL-IDRGLIRDTETL 711

Query: 199  -----QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-P 250
                 +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P
Sbjct: 712  HEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLP 764

Query: 251  DHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDI 303
            + + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR         
Sbjct: 765  EAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM-------- 816

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLI 359
              E  NE         E+R    A A+  + +D  Q    RL+ EL  I    F+  +LI
Sbjct: 817  --EGANE---------EIRELSYANARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLI 865

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--------------------- 398
                ++ +  +   VG  RGS   S  A    IT+++PL                     
Sbjct: 866  SQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVG 924

Query: 399  -RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
              F L                    FE FL      +PD D++F  + +     Y +  +
Sbjct: 925  SGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLF 984

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G ++V +  T G++  K A   V   L               ND       Q I      
Sbjct: 985  GEDKVFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI------ 1016

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV--- 555
               R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+   
Sbjct: 1017 -HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYP 1062

Query: 556  ----------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                      T F+   I    ++K D LG    T+++   D        +D   IP DD
Sbjct: 1063 ADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDD 1116

Query: 606  HETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             E   + +T               GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1117 KEVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1176

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
               +          N +E       LI   + +   VI  ++ +M +  + +G       
Sbjct: 1177 GTDV-------WLGNAQE-------LIKTGICDLSSVIGCRDDIM-VYLMYAG------- 1214

Query: 712  VLRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             L  +M  KI E + K K   E  I    +N +      +  ++      Y F K+HAAA
Sbjct: 1215 -LEPSMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAA 1268

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTL---EMDNVEKIK---------------------- 803
            Y +++ + A+ K H+P+ + A+  T+   + D +  IK                      
Sbjct: 1269 YVLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKEMYSRYMDLGKK 1328

Query: 804  --------KFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
                    +   +      ++ P S+  +   +F +  + +     ++ G+G   A+ I+
Sbjct: 1329 EKDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIV 1388

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            EA  D PF S ED   +     L+++++E L   G+L
Sbjct: 1389 EARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSL 1422


>gi|188586065|ref|YP_001917610.1| DNA polymerase III, alpha subunit [Natranaerobius thermophilus
            JW/NM-WN-LF]
 gi|179350752|gb|ACB85022.1| DNA polymerase III, alpha subunit [Natranaerobius thermophilus
            JW/NM-WN-LF]
          Length = 1210

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 210/1003 (20%), Positives = 381/1003 (37%), Gaps = 237/1003 (23%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  H+  S L+   S   +++  A     AIAITD   + S  E  + A   GI+ + 
Sbjct: 310  IELHAHTRMSTLDATCSATELVETAADWGHKAIAITDHGVVQSFPEAFEAAQEKGIKVLY 369

Query: 72   G--CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            G  C L ++ +DN K T+            +++    +G Q L  L+S  +L     +  
Sbjct: 370  GVECYL-VEDEDNYKDTSY---------HCIVIAKNKQGLQDLYRLISESHLY-YFYRFP 418

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-- 187
            RI    L E+  E L++ +    G + +A   N    AE      +++ G   Y+ +Q  
Sbjct: 419  RIPKKRLSEV-RENLLIGSACERGEVIQA-LLNGKSSAE-----LEEIAGYYDYLEIQPA 471

Query: 188  -------RHRGYDRYRE-----SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
                   R   Y+   +      +VV+LA   + P  AT++  FL   D     +LMA  
Sbjct: 472  GNNEFLIRKGVYESQEDLHNLIKEVVKLARKIDKPFCATSDVHFLHPWDKNYRKILMAGQ 531

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                +SQ       P  Y+K   EM++ F  L E  E+  +    C           P  
Sbjct: 532  GFDDLSQ-------PPLYMKTTDEMLTEFDFLGE--EDAYKAVIEC-----------PDQ 571

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIA 349
            I+ + D++    ++ L    + G E ++ + A +K          +  + RL+ EL  I 
Sbjct: 572  IQNQVDELVPVPQD-LYTPHIPGAEDQITEMAYSKAKQLYGEPLPEIVKTRLEEELKSIV 630

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------- 398
               ++  +LI    ++ + ++   VG  RGS   S+ A    IT+++PL           
Sbjct: 631  DQGYAVIYLISHKLVKKSLEDGYLVG-SRGSVGSSLVATMCDITEVNPLPPHYMCPNCQH 689

Query: 399  ------------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                                           + + F  F+      +PD D++F  + + 
Sbjct: 690  SEFIQDGSVGSGVDLRDKNCPHCNTDMNKDGYDIPFAVFMGFHGEKVPDIDLNFSGEYQP 749

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
                Y +  +G E V +  T G++  K A   V               K   ND      
Sbjct: 750  IAHEYTEELFGKEHVFKAGTIGTIAEKTAFGFV---------------KGYVNDNG---- 790

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY 546
                               V+RL+       G+ R    H  G++I      + +  P+ 
Sbjct: 791  ------------INCRQSEVNRLV---SGCTGVKRTTGQHPGGLMIVPEGHDIHEFCPIQ 835

Query: 547  R---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            R   D ++++  T F+   I    L+K D LG    T++     ++ +    +D   I  
Sbjct: 836  RPADDTKTEVMTTHFDYNAISDR-LLKLDILGHDVPTII-----YMLESITGLDPLKIRL 889

Query: 604  DDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            DD +T  + ++               GTLGI +  +  +RQ LE  +P    ++I     
Sbjct: 890  DDPDTIKIFSSPEPLGVGPEDIDCQVGTLGIPEFGTRFVRQMLEDTKPQTFSELI----- 944

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
                                +I  +    D  L   Q +I   E + ++  ++S    + 
Sbjct: 945  --------------------RISGLSHGTDVWLNNAQDII--AEGIAELGDVIS----TR 978

Query: 710  ADVLRRAMGKKIKEE-----MDK-QKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
             D++   M K + ++     M+K +K + +S   KN + +    + +        Y F K
Sbjct: 979  DDIMVYLMYKGVDKKDAFTIMEKVRKGKGLSDELKNTMKEAGVPDWYLDSCLKIKYLFPK 1038

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLE------------MDNVEKIKKFCQD--- 808
            +HA AY ++S++ A+ K  YP  F A   +++            +D V++  K+ ++   
Sbjct: 1039 AHAVAYTMMSFRIAYYKVFYPEAFYATFFSVKTEDFNSNMIVKGLDAVDEQIKYVEERGV 1098

Query: 809  ---------------AR---QFNIQIMPPSV-NTPCVDFKVG-DNRIYYSLAAIKGVGTT 848
                           AR   Q  +Q++P S+  +    F+V  D  +   L  I G+G++
Sbjct: 1099 SATPKEKSELVVLEVAREMFQRGVQVLPVSIYESDSEKFQVTQDGYLRPPLITIPGLGSS 1158

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             A+ I++A  ++ F S ED   R     +++ V+E L   G L
Sbjct: 1159 VAKQIVKAREEREFSSKEDLRKR---GGVSKSVIEPLEEHGCL 1198


>gi|289673965|ref|ZP_06494855.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae FF5]
          Length = 155

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 71/106 (66%), Gaps = 1/106 (0%)

Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
           R +++ EL +IA  KF  YFL V D +++A+  +I +  GRGS A S   YAL IT+++P
Sbjct: 51  RAQVEKELALIAEKKFDSYFLTVHDIVEFARSQHI-LCQGRGSAANSAVCYALGITELNP 109

Query: 398 LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            + +LLFERF++ +R   PD D+DF  DRR+EVI+Y+  +YG  R 
Sbjct: 110 EQSNLLFERFISRERNEPPDIDVDFEHDRREEVIQYIFRRYGRGRA 155


>gi|23099048|ref|NP_692514.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus iheyensis
            HTE831]
 gi|32469727|sp|Q8EQU6|DPO3_OCEIH RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|22777276|dbj|BAC13549.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus iheyensis
            HTE831]
          Length = 1428

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 199/907 (21%), Positives = 335/907 (36%), Gaps = 210/907 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             L+  T EG + L +LVSR ++ D   +  R+  S LQ+   EG+++ T    G +    
Sbjct: 607  TLIAQTEEGLKNLYKLVSRAHI-DFFYRVPRLPRSVLQK-HREGILVGTACDKGEVFETM 664

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQ--------------LAY 205
               S + AE+    +        Y+ +Q    Y    E  +VQ              L  
Sbjct: 665  MQKSEEEAEQVADFYD-------YIEVQPPENYTHLIEKDLVQNESQILDILRKLVNLGD 717

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
              +  +VAT N  +L E D +   +L+       +S+       PD   +  +EM++ F 
Sbjct: 718  KMKKTVVATGNVHYLHEHDKQYRQILIGSQAGNPLSRHK----LPDTPFRTTTEMINCFH 773

Query: 266  DLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA--VAGLEV 321
             L E  A E  V+  ++ +  ++  +P+         +  ++E  +   NKA  V G  V
Sbjct: 774  FLGEKKANEIVVDNTQKLTDSIEEISPVKDGLFTPNIEGAEQEMRDLCYNKAKEVYGEPV 833

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                         Q    RL+ EL  I    F+  +LI    ++ +  +   VG  RGS 
Sbjct: 834  ------------PQIVVDRLEKELESIIGNGFAVIYLISQKLVKKSLDDGYLVG-SRGSV 880

Query: 382  AGSVTAYALTITDIDPL----------------------RFSLL---------------- 403
              S  A    IT+++PL                       F L                 
Sbjct: 881  GSSFVATMTEITEVNPLVPHYVCKHCHHHEFFTDGSVASGFDLPDKDCPGCGKGLTKDGQ 940

Query: 404  ---FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
               FE FL      +PD D++F  D +     Y +  +G + V +  T G++  K A   
Sbjct: 941  DIPFETFLGFKGDKVPDIDLNFSGDYQPRAHNYTKELFGIDNVYRAGTIGTVAEKTA--- 997

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                 +  A D++F      +  VDRL+   Q   G
Sbjct: 998  --------YGYV-----------------KGYASDNQFV---YKNAEVDRLV---QGCTG 1026

Query: 521  LYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + R    H  GI++   D+ +    P+     D  S+   T F+   I    L+K D LG
Sbjct: 1027 VKRTTGQHPGGIIVVPSDKEIYDFTPIQFPADDRNSEWRTTHFDFHSIHD-NLLKLDILG 1085

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKGTLGIF 621
                T+++   D        +D   IP DD E   + +                GTLG+ 
Sbjct: 1086 HDDPTVIRMLQDLSG-----MDPKNIPTDDEEVMKIFSGTESLGVTPEQINCKTGTLGVP 1140

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            +  +  +RQ LE  +P    +++ +  L     +          N +E       LI+  
Sbjct: 1141 EFGTKFVRQMLEDTKPKTFAELLIISGLSHGTDV-------WLGNAQE-------LINDG 1186

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM--GKKIKEEMDKQKERFISGASKN 739
            + +   VI  ++ +M +  +  G   S A  +   +  GK +K+E       +I    K+
Sbjct: 1187 ICQLPDVIGCRDDIM-VYLMHKGLDPSMAFTIMEFVRKGKGLKDE-------WIDEMKKH 1238

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
             +      + +    K   Y F K+HAAAY +++ + A+ K H+P+ F AA  T+  D+ 
Sbjct: 1239 AVP-----DWYIESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHHPILFYAAYFTVRADDF 1293

Query: 800  E---------KIKKFCQDARQFNIQIMPPSVN-------------------------TPC 825
            E          I+K  ++         P   N                         +  
Sbjct: 1294 ELDTMIKGSDAIRKRIEEITVKGNDASPKEKNLLTVLEISLEMCERGFSFKKVDLYQSSA 1353

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             DF V  + +     A+ G+GT  A +I++A  +  F S ED   R    K+++ VLE L
Sbjct: 1354 TDFIVEGDSLLPPFNAVDGLGTNAALNIVKAREEGEFLSKEDLRER---SKISKTVLEYL 1410

Query: 886  VFAGALD 892
               G L+
Sbjct: 1411 DNHGCLE 1417


>gi|242373555|ref|ZP_04819129.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
 gi|242348918|gb|EES40520.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
          Length = 1442

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 198/933 (21%), Positives = 356/933 (38%), Gaps = 228/933 (24%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+TN+          + L+V   EG + L ++VS   L+    ++ RI  S L E   
Sbjct: 601  NKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVQYYYRTPRIPRSLLNEY-R 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQRHRGYDRYRES- 198
            EG+++ T    G +  A         EK  +   F ++    LY +L   R   R +E+ 
Sbjct: 659  EGILVGTACDEGELFTAVMQKDQSEVEKIAKYYDFIEVQPPALYQDLM-DRELIRDKETL 717

Query: 199  -----QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-P 250
                 ++++   +  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P
Sbjct: 718  IEIYKRLIEAGESANIPVIATGNAHYLYEHDAIARKILIA-------SQPGNPLNRSTLP 770

Query: 251  DHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            + + +   EM+  F  L E       ++NT E+A R   ++ +   +    +E   D   
Sbjct: 771  EAHFRTTDEMLDEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDKLFTPRMEGAND--- 827

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
                           E+R    + AK  + +D  Q    RL+ EL  I    FS  +LI 
Sbjct: 828  ---------------EIRELSYSNAKKLYGEDLPQIVIDRLEKELASIIGNGFSVIYLIS 872

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 873  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFDDGSVGS 931

Query: 399  RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE FL      +PD D++F  + +     Y +  +G
Sbjct: 932  GFDLPDKKCPTCGNDLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 991

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND       Q I       
Sbjct: 992  EDKVFRAGTIGTVAEKTAFGFVKGYL---------------ND-------QGI------- 1022

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
              R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+    
Sbjct: 1023 HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQFPA 1069

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++     + Q    +D   IP DD 
Sbjct: 1070 DDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIR-----MLQDLSGIDPKTIPVDDK 1123

Query: 607  ETYH--------------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            +T                +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1124 DTMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1183

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                ++ + N ++  ++ I  +  +I         +++Y    +  A L    +    + 
Sbjct: 1184 T---DVWLGNAQELIRQGICDLSSVIGC----RDDIMVY----LMYAGLEPSMAFKTMEF 1232

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +R+  G+ + +EM       +     N +      + +    +   Y F K+HAAAY ++
Sbjct: 1233 VRK--GRGLTDEM-------VEAMKANDVP-----DWYLDSCRKIKYMFPKAHAAAYVLM 1278

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--ARQFNI------- 814
            + + A+ K H+P+ + AA  T+   + +          I+   +D  +R  ++       
Sbjct: 1279 AVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1338

Query: 815  ---------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                           ++ P S+  +   DF +  + +     A+ G+G   A+ I+EA  
Sbjct: 1339 LTVLEIMNEMAHRGYRMQPISLEKSQAFDFIIEGDTLIPPFVAVPGLGENVAKRIVEARE 1398

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + PF S ED   +     L+++V++ L   G+L
Sbjct: 1399 EGPFLSKEDLNKKA---GLSQKVIDYLDEMGSL 1428


>gi|251810695|ref|ZP_04825168.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805855|gb|EES58512.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
          Length = 1442

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 201/933 (21%), Positives = 349/933 (37%), Gaps = 228/933 (24%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+TN+          + L+V   EG + L ++VS   L+    ++ RI  S L E   
Sbjct: 601  NKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVKYYYRTPRIPRSLLNEY-R 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL-QRHRGYDRYRES 198
            EG+++ T    G +  A         EK  +   F ++    LY +L  R    D    +
Sbjct: 659  EGILIGTACDEGELFTAVMQKDQSEVEKIAKFYDFIEVQPPALYQDLMDRELIRDNETLT 718

Query: 199  QV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            Q+    +    +  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 719  QIYKRLIDAGKSANIPVIATGNAHYLYEHDAIARKILIA-------SQPGNPLNRSTLPE 771

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + +   EM+  F  L E       + NT E+A +   ++    PI  +      D    
Sbjct: 772  AHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELANKIEKVV----PIKDKLFTPRMDG--- 824

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVA 361
                       A  E+R    + AK  + +D  Q    RL+ EL+ I    FS  +LI  
Sbjct: 825  -----------ANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSIIGNGFSVIYLISQ 873

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------R 399
              ++ +  +   VG  RGS   S  A    IT+++PL                       
Sbjct: 874  RLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFDDGSVGSG 932

Query: 400  FSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
            F L                    FE FL      +PD D++F  + +     Y +  +G 
Sbjct: 933  FDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFGE 992

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            ++V +  T G++  K A   V   L               ND       Q I        
Sbjct: 993  DKVFRAGTIGTVAEKTAFGFVKGYL---------------ND-------QGI-------H 1023

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----- 555
             R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+     
Sbjct: 1024 KRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQFPAD 1070

Query: 556  --------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                    T F+   I    ++K D LG    T+++   D        +D   IP DD E
Sbjct: 1071 DQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDKE 1124

Query: 608  TYH--------------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            T                +L   GT G+ +  +  +RQ LE  +P    +++ +  L    
Sbjct: 1125 TMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGT 1184

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               ++ + N ++  ++ I  +  +I         +++Y    +  A L    +    + +
Sbjct: 1185 ---DVWLGNAQELIRQGICDLSSVIGC----RDDIMVY----LMYAGLEPSMAFKTMEFV 1233

Query: 714  RRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            R+  G+ + +EM +  KE  +     +   K               Y F K+HAAAY ++
Sbjct: 1234 RK--GRGLTDEMVEAMKENNVPDWYLDSCRKI-------------KYMFPKAHAAAYVLM 1278

Query: 773  SYQTAWMKTHYPVEFLAASMTL---EMDNVEKIK-------------------------- 803
            + + A+ K H+P+ + AA  T+   + D +  IK                          
Sbjct: 1279 AVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKEMYSRYMDLGKKEKDV 1338

Query: 804  ----KFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                +   +      ++ P S+  +   DF +  + +     ++ G+G   A+ I+EA  
Sbjct: 1339 LTVLEIMNEMAHRGFRLQPISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEARE 1398

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + PF S ED   +     L+++V++ L   G+L
Sbjct: 1399 EGPFLSKEDLNKKA---GLSQKVIDYLDELGSL 1428


>gi|57866746|ref|YP_188413.1| DNA polymerase III PolC [Staphylococcus epidermidis RP62A]
 gi|293366772|ref|ZP_06613448.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W2(grey)]
 gi|57637404|gb|AAW54192.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis RP62A]
 gi|291319073|gb|EFE59443.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 1436

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 201/935 (21%), Positives = 348/935 (37%), Gaps = 232/935 (24%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+TN+          + L+V   EG + L ++VS   L+    ++ RI  S L E   
Sbjct: 595  NKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVKYYYRTPRIPRSLLNEY-R 652

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL-QRHRGYDRYRES 198
            EG+++ T    G +  A         EK  +   F ++    LY +L  R    D    +
Sbjct: 653  EGILIGTACDEGELFTAVMQKDQSEVEKIAKFYDFIEVQPPALYQDLMDRELIRDNETLT 712

Query: 199  QV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP---RVTPD 251
            Q+    +    +  +P++AT N+ +L E D  A  +L+A       SQ   P      P+
Sbjct: 713  QIYKRLIDAGKSANIPVIATGNAHYLYEHDAIARKILIA-------SQPGNPLNRSTLPE 765

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + +   EM+  F  L E       + NT E+A +   ++    PI  +      D    
Sbjct: 766  AHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELANKIEKVV----PIKDKLFTPRMDG--- 818

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVA 361
                       A  E+R    + AK  + +D  Q    RL+ EL+ I    FS  +LI  
Sbjct: 819  -----------ANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSIIGNGFSVIYLISQ 867

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------R 399
              ++ +  +   VG  RGS   S  A    IT+++PL                       
Sbjct: 868  RLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFDDGSVGSG 926

Query: 400  FSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
            F L                    FE FL      +PD D++F  + +     Y +  +G 
Sbjct: 927  FDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFGE 986

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            ++V +  T G++  K A   V   L               ND       Q I        
Sbjct: 987  DKVFRAGTIGTVAEKTAFGFVKGYL---------------ND-------QGI-------H 1017

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----- 555
             R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+     
Sbjct: 1018 KRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQFPAD 1064

Query: 556  --------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                    T F+   I    ++K D LG    T+++   D        +D   IP DD E
Sbjct: 1065 DQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDKE 1118

Query: 608  TYH--------------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            T                +L   GT G+ +  +  +RQ LE  +P    +++ +  L    
Sbjct: 1119 TMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGT 1178

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               ++ + N ++  ++ I  +  +I         +++Y    +  A L    +    + +
Sbjct: 1179 ---DVWLGNAQELIRQGICDLSSVIGC----RDDIMVY----LMYAGLEPSMAFKTMEFV 1227

Query: 714  RRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            R+  G+ + +EM +  KE  +     +   K               Y F K+HAAAY ++
Sbjct: 1228 RK--GRGLTDEMVEAMKENNVPDWYLDSCRKI-------------KYMFPKAHAAAYVLM 1272

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDA-------------- 809
            + + A+ K H+P+ + AA  T+   + +          I+   +D               
Sbjct: 1273 AVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1332

Query: 810  ------------RQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                        R F +Q  P S+  +   DF +  + +     ++ G+G   A+ I+EA
Sbjct: 1333 LTVLEIMNEMAHRGFRLQ--PISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEA 1390

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              + PF S ED   +     L+++V++ L   G+L
Sbjct: 1391 REEGPFLSKEDLNKKA---GLSQKVIDYLDELGSL 1422


>gi|153873150|ref|ZP_02001825.1| polymerase III subunit alpha [Beggiatoa sp. PS]
 gi|152070383|gb|EDN68174.1| polymerase III subunit alpha [Beggiatoa sp. PS]
          Length = 170

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 75/120 (62%), Gaps = 1/120 (0%)

Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
           +++KLEGL R+   HA G+VI    L+   P+Y +      +TQF+   +E  GL+KFDF
Sbjct: 1   MARKLEGLTRNPGKHAGGVVIAPTVLTDFTPLYCEADGSDLMTQFDKGDVEAVGLVKFDF 60

Query: 574 LGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
           LGL+TLT+++ +L+ +      K+D++ IP DD ETY L     T  +FQLESSG++ + 
Sbjct: 61  LGLRTLTIIKWALEMIHDSTDKKIDIAKIPLDDPETYDLFKRADTTAVFQLESSGIKSSF 120


>gi|242242547|ref|ZP_04796992.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
 gi|242233974|gb|EES36286.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
          Length = 1442

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 203/935 (21%), Positives = 350/935 (37%), Gaps = 232/935 (24%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+TN+          + L+V   EG + L ++VS   L+    ++ RI  S L E   
Sbjct: 601  NKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVKYYYRTPRIPRSLLNEY-R 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL-QRHRGYDRYRES 198
            EG+++ T    G +  A         EK  +   F ++    LY +L  R    D    +
Sbjct: 659  EGILIGTACDEGELFTAVMQKDQSEVEKIAKFYDFIEVQPPALYQDLMDRELIRDNETLT 718

Query: 199  QV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            Q+    +    +  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 719  QIYKRLIDAGKSANIPVIATGNAHYLFEHDAIARKILIA-------SQPGNPLNRSTLPE 771

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + +   EM+  F  L E       + NT E+A +   ++    PI  +      D    
Sbjct: 772  AHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELANKIEKVV----PIKDKLFTPRMDG--- 824

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVA 361
                       A  E+R    + AK  + +D  Q    RL+ EL+ I    FS  +LI  
Sbjct: 825  -----------ANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSIIGNGFSVIYLISQ 873

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------R 399
              ++ +  +   VG  RGS   S  A    IT+++PL                       
Sbjct: 874  RLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFDDGSVGSG 932

Query: 400  FSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
            F L                    FE FL      +PD D++F  + +     Y +  +G 
Sbjct: 933  FDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFGE 992

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            ++V +  T G++  K A   V   L               ND       Q I        
Sbjct: 993  DKVFRAGTIGTVAEKTAFGFVKGYL---------------ND-------QGI-------H 1023

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----- 555
             R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+     
Sbjct: 1024 KRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQFPAD 1070

Query: 556  --------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                    T F+   I    ++K D LG    T+++   D        +D   IP DD E
Sbjct: 1071 DQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDKE 1124

Query: 608  TYH--------------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            T                +L   GT G+ +  +  +RQ LE  +P    +++ +  L    
Sbjct: 1125 TMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGT 1184

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               ++ + N ++  ++ I  +  +I         +++Y    +  A L    +    + +
Sbjct: 1185 ---DVWLGNAQELIRQGICDLSSVIGC----RDDIMVY----LMYAGLEPSMAFKTMEFV 1233

Query: 714  RRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            R+  G+ + +EM +  KE  +     +   K               Y F K+HAAAY ++
Sbjct: 1234 RK--GRGLTDEMVEAMKENNVPDWYLDSCRKI-------------KYMFPKAHAAAYVLM 1278

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDA-------------- 809
            + + A+ K H+P+ + AA  T+   + +          I+   +D               
Sbjct: 1279 AVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1338

Query: 810  ------------RQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                        R F +Q  P S+  +   DF +  + +     ++ G+G   A+ I+EA
Sbjct: 1339 LTVLEIMNEMAHRGFRLQ--PISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEA 1396

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              + PF S ED   +     L+++V++ L   G+L
Sbjct: 1397 REEGPFLSKEDLNKKA---GLSQKVIDYLDELGSL 1428


>gi|213609969|ref|ZP_03369795.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. E98-2068]
          Length = 338

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 103/217 (47%), Gaps = 20/217 (9%)

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A +    F  L D C+R D+KKLNRRVLE L
Sbjct: 1    FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 60

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + +GA D  G  R  L+ SL +  K A    K       ++F    G  ++    E   +
Sbjct: 61   IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQI 112

Query: 946  ENS---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNI 995
            E S          V  + E+  LG Y +GHP++ Y K I R +G    ++   T RG   
Sbjct: 113  EQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVT 172

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              A +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 173  TAAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 209


>gi|73919252|sp|Q5HPS7|DPO3_STAEQ RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|329736245|gb|EGG72517.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis VCU028]
 gi|329736547|gb|EGG72813.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis VCU045]
          Length = 1438

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 201/935 (21%), Positives = 348/935 (37%), Gaps = 232/935 (24%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+TN+          + L+V   EG + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVKYYYRTPRIPRSLLNEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL-QRHRGYDRYRES 198
            EG+++ T    G +  A         EK  +   F ++    LY +L  R    D    +
Sbjct: 655  EGILIGTACDEGELFTAVMQKDQSEVEKIAKFYDFIEVQPPALYQDLMDRELIRDNETLT 714

Query: 199  QV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP---RVTPD 251
            Q+    +    +  +P++AT N+ +L E D  A  +L+A       SQ   P      P+
Sbjct: 715  QIYKRLIDAGKSANIPVIATGNAHYLYEHDAIARKILIA-------SQPGNPLNRSTLPE 767

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + +   EM+  F  L E       + NT E+A +   ++    PI  +      D    
Sbjct: 768  AHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELANKIEKVV----PIKDKLFTPRMDG--- 820

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVA 361
                       A  E+R    + AK  + +D  Q    RL+ EL+ I    FS  +LI  
Sbjct: 821  -----------ANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSIIGNGFSVIYLISQ 869

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------R 399
              ++ +  +   VG  RGS   S  A    IT+++PL                       
Sbjct: 870  RLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFDDGSVGSG 928

Query: 400  FSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
            F L                    FE FL      +PD D++F  + +     Y +  +G 
Sbjct: 929  FDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFGE 988

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            ++V +  T G++  K A   V   L               ND       Q I        
Sbjct: 989  DKVFRAGTIGTVAEKTAFGFVKGYL---------------ND-------QGI-------H 1019

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----- 555
             R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+     
Sbjct: 1020 KRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQFPAD 1066

Query: 556  --------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                    T F+   I    ++K D LG    T+++   D        +D   IP DD E
Sbjct: 1067 DQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDKE 1120

Query: 608  TYH--------------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            T                +L   GT G+ +  +  +RQ LE  +P    +++ +  L    
Sbjct: 1121 TMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGT 1180

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               ++ + N ++  ++ I  +  +I         +++Y    +  A L    +    + +
Sbjct: 1181 ---DVWLGNAQELIRQGICDLSSVIGC----RDDIMVY----LMYAGLEPSMAFKTMEFV 1229

Query: 714  RRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            R+  G+ + +EM +  KE  +     +   K               Y F K+HAAAY ++
Sbjct: 1230 RK--GRGLTDEMVEAMKENNVPDWYLDSCRKI-------------KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDA-------------- 809
            + + A+ K H+P+ + AA  T+   + +          I+   +D               
Sbjct: 1275 AVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1334

Query: 810  ------------RQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                        R F +Q  P S+  +   DF +  + +     ++ G+G   A+ I+EA
Sbjct: 1335 LTVLEIMNEMAHRGFRLQ--PISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEA 1392

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              + PF S ED   +     L+++V++ L   G+L
Sbjct: 1393 REEGPFLSKEDLNKKA---GLSQKVIDYLDELGSL 1424


>gi|282876304|ref|ZP_06285171.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis SK135]
 gi|281295329|gb|EFA87856.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis SK135]
          Length = 1438

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 201/933 (21%), Positives = 349/933 (37%), Gaps = 228/933 (24%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+TN+          + L+V   EG + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVKYYYRTPRIPRSLLNEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL-QRHRGYDRYRES 198
            EG+++ T    G +  A         EK  +   F ++    LY +L  R    D    +
Sbjct: 655  EGILIGTACDEGELFTAVMQKDQSEVEKIAKFYDFIEVQPPALYQDLMDRELIRDNETLT 714

Query: 199  QV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            Q+    +    +  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 715  QIYKRLIDAGKSANIPVIATGNAHYLYEHDAIARKILIA-------SQPGNPLNRSTLPE 767

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + +   EM+  F  L E       + NT E+A +   ++    PI  +      D    
Sbjct: 768  AHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELANKIEKVV----PIKDKLFTPRMDG--- 820

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVA 361
                       A  E+R    + AK  + +D  Q    RL+ EL+ I    FS  +LI  
Sbjct: 821  -----------ANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSIIGNGFSVIYLISQ 869

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------R 399
              ++ +  +   VG  RGS   S  A    IT+++PL                       
Sbjct: 870  RLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFDDGSVGSG 928

Query: 400  FSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
            F L                    FE FL      +PD D++F  + +     Y +  +G 
Sbjct: 929  FDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFGE 988

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            ++V +  T G++  K A   V   L               ND       Q I        
Sbjct: 989  DKVFRAGTIGTVAEKTAFGFVKGYL---------------ND-------QGI-------H 1019

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----- 555
             R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+     
Sbjct: 1020 KRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQFPAD 1066

Query: 556  --------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                    T F+   I    ++K D LG    T+++   D        +D   IP DD E
Sbjct: 1067 DQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDKE 1120

Query: 608  TYH--------------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            T                +L   GT G+ +  +  +RQ LE  +P    +++ +  L    
Sbjct: 1121 TMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGT 1180

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               ++ + N ++  ++ I  +  +I         +++Y    +  A L    +    + +
Sbjct: 1181 ---DVWLGNAQELIRQGICDLSSVIGC----RDDIMVY----LMYAGLEPSMAFKTMEFV 1229

Query: 714  RRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            R+  G+ + +EM +  KE  +     +   K               Y F K+HAAAY ++
Sbjct: 1230 RK--GRGLTDEMVEAMKENNVPDWYLDSCRKI-------------KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTL---EMDNVEKIK-------------------------- 803
            + + A+ K H+P+ + AA  T+   + D +  IK                          
Sbjct: 1275 AVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKEMYSRYMDLGKKEKDV 1334

Query: 804  ----KFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                +   +      ++ P S+  +   DF +  + +     ++ G+G   A+ I+EA  
Sbjct: 1335 LTVLEIMNEMAHRGFRLQPISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEARE 1394

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + PF S ED   +     L+++V++ L   G+L
Sbjct: 1395 EGPFLSKEDLNKKA---GLSQKVIDYLDELGSL 1424


>gi|225568406|ref|ZP_03777431.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM 15053]
 gi|225162634|gb|EEG75253.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM 15053]
          Length = 1487

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 186/909 (20%), Positives = 345/909 (37%), Gaps = 197/909 (21%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +++L     G   L +L+S+ +L   G+Q  RI  S L     EGLI+ +   +G + +A
Sbjct: 640  VIILAKNETGRVNLYKLISKSHLDYFGRQP-RIPKSELSR-HREGLIVGSACEAGELYQA 697

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQR----HRGYD-RYRESQVVQLAYTH 207
               + SQ    R++ F      + L  ++  +  +R    H   D +     +V+L    
Sbjct: 698  ILDDKSQERIARIVNFYDYLEIQPLGNNKFMIASERISKIHSEEDLKNVNRTIVKLGEKF 757

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
              P+VAT +  F+  ED     ++MA    T     D     P  YL+   EM++ F  L
Sbjct: 758  RKPVVATCDVHFMDPEDEVYRRIIMAGKGFT-----DADEQAP-LYLRTTDEMLAEFEYL 811

Query: 268  --PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR----NKAVAGLEV 321
               +A E  ++   + +  ++  +P+ P     +C  +  + +  LR    NKA +    
Sbjct: 812  GSAKAREVVIDNPNKIADSVERISPVRP----DKCPPVIPDSDQMLRDICYNKARSMYGD 867

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
             L +             +RL+ ELN I    F+  ++I    +  + ++   VG  RGS 
Sbjct: 868  ELPEVVT----------ERLERELNSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSV 916

Query: 382  AGSVTAYALTITDIDPLR------------------------------------------ 399
              S  A    IT+++PL                                           
Sbjct: 917  GSSFVATMAGITEVNPLSPHYYCRSCHYSDFDSGDVRAYAGGCGWDMPDKVCPVCGEKLV 976

Query: 400  ---FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
               F + FE FL       PD D++F  D +    +Y +  +G  +  +  T G+L  K 
Sbjct: 977  KDGFDIPFETFLGFKGNKEPDIDLNFSGDYQSNAHKYTEVIFGDGQTFRAGTIGTLADKT 1036

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A   V    +    Q  R C+                              +DR++   Q
Sbjct: 1037 AFGYVKNYFE-ERGQRKRNCE------------------------------IDRIV---Q 1062

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMY-------RDVRSDLPVTQFNMKWIEKAGLI 569
               G+ R    H  GI++   PL + +  +        D+ +D+  T F+   I+   L+
Sbjct: 1063 GCTGIRRSTGQHPGGIIV--LPLGEDINSFTPVQHPANDMTTDIVTTHFDYHSIDH-NLL 1119

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGV---------KVDLSLIPFDDHETYHLLTTKGTLGI 620
            K D LG    T+++   +F++   +         + D + IP DD     L      LGI
Sbjct: 1120 KLDILGHDDPTMIKTLEEFISSPAMENEYNETDNRFDATKIPLDDRGVMSLFHDTSALGI 1179

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
               +  G      G+     E ++ +V   +P  + +++  +   +G           D 
Sbjct: 1180 KPDDIGGCPVGCLGIPEFGTEFVVQMVVDTKPQTLSDLIRISGLSHG----------TDV 1229

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE-----MDK-QKERFIS 734
             L   Q +I   +  +  A        +  D++   + K +  E     M+K +K + ++
Sbjct: 1230 WLNNAQELIRSGKATISTA------ICTRDDIMTYLINKGMDSELSFTIMEKVRKGKGLT 1283

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               +  + +    + +    K   Y F K+HAAAY +++Y+ A+ K +YP+ +  A   +
Sbjct: 1284 PEFEKAMKEADVPDWYIWSCKQIKYMFPKAHAAAYVMMAYRIAYCKINYPLAYYGAYFGI 1343

Query: 795  EMD---------NVEKIKKFCQDARQFN------------------------IQIMPPSV 821
              D           EK+K + +D ++ +                         + MP  +
Sbjct: 1344 RADAFSYELMCQGKEKLKFYIEDYKRRSDSLSKKEQDTMKDMRIVQEMYARGYEFMPLDI 1403

Query: 822  -NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                   F++ D R+   L++I G+G   A  + EA+ D P+ S +DF  R    K+++ 
Sbjct: 1404 YKAKASKFQIVDGRLMPPLSSIDGMGDKAAEAVEEAAKDGPYLSRDDFRQRT---KVSKT 1460

Query: 881  VLESLVFAG 889
            V++ +   G
Sbjct: 1461 VIDYMADMG 1469


>gi|222099063|ref|YP_002533631.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
 gi|221571453|gb|ACM22265.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
          Length = 1367

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 193/876 (22%), Positives = 338/876 (38%), Gaps = 166/876 (18%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            +LV    G + L  LVS  Y   +   SV RI  S L E   EGLI+ +   SG + RA 
Sbjct: 552  ILVQNRTGLKNLYRLVSDSYT--KYFHSVPRILKSELIE-KREGLIVGSACISGELARAA 608

Query: 160  FFNSSQVAEKRLLTFKKLFG----DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATN 215
               +S    + +  F         D +  + +  R   +    ++ ++A     P+V T 
Sbjct: 609  LEGASDSELEEIAKFYDYIEIMPLDVIEEDEEVDRERLKEVYRKLYRIAKRLNKPVVMTG 668

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS----IFSDLPEAL 271
            +  FL  ED +    L+A        Q       P  YL+   EM+     IF D   A 
Sbjct: 669  DVHFLDPEDAKGRSALLAPQSRNFERQ-------PALYLRTTEEMLEKAMEIFEDEEIAK 721

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
            E  VE   R + +++   P+     EK+      E  +E+    V  L +  A       
Sbjct: 722  EVVVENPNRIAEMIEEVQPL-----EKKLHPPVIENADEI----VRNLTMERAHELYGDP 772

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
               +   +R+  EL+ I    ++  +LI  + +Q +  +   VG  RGS   S+ A+ L 
Sbjct: 773  L-PEIVEKRIKKELDAIINHGYAVLYLIAKELVQKSMSDGYVVG-SRGSVGSSLVAHLLG 830

Query: 392  ITDIDPL------------------RFS-----------------------LLFERFLNP 410
            IT+++PL                  R+                        + FE F+  
Sbjct: 831  ITEVNPLPPHYRCPRCKYFEIVEDDRYGAGYDLPDKSCPKCGTPLKKDGHDIPFETFMGF 890

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +   +PD D++F  + +D+  R+V+  +G + V +  T  ++  K+A+  V        S
Sbjct: 891  EGDKVPDIDLNFSGEYQDQAHRFVEELFGKDHVYRAGTINTIAEKSAVGYVK-------S 943

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
              ++  K                   + R A +     +RL+ +   + G+ R    H  
Sbjct: 944  YEEKTGK-------------------KLRRAEM-----ERLVSM---ITGVKRTTGQHPG 976

Query: 531  GIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            G++I   D+ +    P+     D  + +  T F  + I    L+K D LG    T ++  
Sbjct: 977  GLMIIPKDKEVYDFTPIQYPANDREAGVFTTHFAYETIHD-DLVKIDALGHDDPTFIKML 1035

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D   +P DD +T  + ++   LG+  +E  G      G+     E +  
Sbjct: 1036 KDLTG-----IDPMSVPMDDPDTLAIFSSVKPLGVDPVEL-GSDVGTYGIPEFGTEFVRG 1089

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ++   RP     +V  +   +G +  ++     I+    +   VI  ++ +M    +  G
Sbjct: 1090 MLVETRPKSFAELVRISGLSHGTDVWLNNARDWINLGYAKLSEVISCRDDIMNFL-IHKG 1148

Query: 705  YSLSEADVLRRAM--GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
               S A  +  ++  GK I EEM+K+  R  +               F    K   Y F 
Sbjct: 1149 MEPSLAFKIMESVRKGKGITEEMEKEMRRLKTP------------EWFIESCKRIKYLFP 1196

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFC------- 806
            K+HA AY  ++++ A+ K HYP++F AA  T++ D           E IK          
Sbjct: 1197 KAHAVAYVSMAFRIAYFKVHYPLQFYAAYFTIKGDQFDPTLVLKGKEAIKARLRELKMMT 1256

Query: 807  -QDARQFN---------------IQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
             +DA++ N                  +PP +  +    F +  N +      + G+G + 
Sbjct: 1257 GKDAQKKNEESVLEVALEMILRGFSFLPPDIFKSDAKKFLIEGNALRIPFNKLPGLGDSV 1316

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            A  I+ A  +KPF S+ED   R    K +  +++SL
Sbjct: 1317 AESIVRAREEKPFTSIEDLVRRTKVNKNHVELMKSL 1352



 Score = 41.6 bits (96), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+ +S L+  + + + +++      PA+AITD  N+ +   F   A +AGI+PI 
Sbjct: 273 VELHAHTKFSDLDAIMDIESYVNRAKEWGFPAVAITDHGNVQAIPYFYDAAKSAGIKPIF 332

Query: 72  GCQ 74
           G +
Sbjct: 333 GIE 335


>gi|170288161|ref|YP_001738399.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
 gi|170175664|gb|ACB08716.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
          Length = 1367

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 196/884 (22%), Positives = 341/884 (38%), Gaps = 168/884 (19%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            +LV   +G + L +LVS  Y+        RI  S L E   EGL++ +   SG + RA  
Sbjct: 550  ILVQNKKGLKNLYKLVSDSYI-KYFYGVPRILKSALIE-NREGLLVGSACISGELGRAAL 607

Query: 161  FNSSQVAEKRLLTFKKLFGDR-LYVNLQRHRGYDRYRESQVVQLAYTHELPL----VATN 215
              +S    + +  F        L V  +     DR R  +V +  Y     L    V T 
Sbjct: 608  EGASDSELEEIAKFYDYIEVMPLDVIAEDEEDLDRERLKEVYRRLYRIAKKLNKFVVMTG 667

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS----IFSDLPEAL 271
            +  FL  ED      L+A   +     +      P  YL+   EM+     IF D   A 
Sbjct: 668  DVHFLDPEDARGRAALLAPQGNRNFENQ------PALYLRTTEEMLEKAMEIFEDEEIAR 721

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
            E  +E   R + +++   P+     EK+      E  +E+    V  L ++ A   I   
Sbjct: 722  EVVIENPNRIADMIEEVQPL-----EKKLHPPIIENADEI----VRNLTMKRAY-EIYGD 771

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
               +  ++R++ ELN I    ++  +LI  + +Q +  +   VG  RGS   S+ A  L 
Sbjct: 772  PLPEIVQKRVEKELNAIINHGYAVLYLIAQELVQKSMSDGYVVG-SRGSVGSSLVANLLG 830

Query: 392  ITDIDPL------------------RFS-----------------------LLFERFLNP 410
            IT+++PL                  R+                        + FE F+  
Sbjct: 831  ITEVNPLPPHYRCPECKYFEVVEDDRYGAGYDLPDKKCPVCGAPLKKDGHDIPFETFMGF 890

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +   +PD D++F  + ++   R+V+  +G + V +  T  ++  K+A+  V R+ +    
Sbjct: 891  EGDKVPDIDLNFSGEYQERAHRFVEELFGKDHVYRAGTINTIAEKSAVGYV-RSYEEKTG 949

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            +                         + R+A +     +RL+ +   + G+ R    H  
Sbjct: 950  K-------------------------KLRKAEM-----ERLVSM---ITGVKRTTGQHPG 976

Query: 531  GIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            G++I   D+ +    P+     D  + +  T F  + I    L+K D LG    T ++  
Sbjct: 977  GLMIIPKDKEVYDFTPIQYPANDRNAGVFTTHFAYETIHD-DLVKIDALGHDDPTFIKML 1035

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI--FQLESSGMRQALEGMQPDCIEDI 643
             D        +D   IP DD ET  + ++   LG+   +LES        G+     E +
Sbjct: 1036 KDLTG-----IDPMTIPMDDPETLAIFSSVKPLGVDPVELESD---VGTYGIPEFGTEFV 1087

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
              ++   RP     +V  +   +G +  ++     I+    +   VI  ++ +M    + 
Sbjct: 1088 RGMLVETRPKSFAELVRISGLSHGTDVWLNNARDWINLGYAKLSDVISCRDDIMNFL-IH 1146

Query: 703  SGYSLSEADVLRRAM--GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             G   S A  +   +  GK I EEM+ +            + K      F    K   Y 
Sbjct: 1147 KGMEPSLAFKIMENVRKGKGITEEMESE------------MRKLKVPEWFIESCKRIKYL 1194

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKF------ 805
            F K+HA AY  ++++ A+ K HYP++F AA  T++ D           E IK+       
Sbjct: 1195 FPKAHAVAYVSMAFRIAYFKVHYPLQFYAAYFTIKGDQFDPVLVLRGKEAIKRRLRELKA 1254

Query: 806  --CQDARQFN---------------IQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGT 847
               +DA++ N                  +PP +  +    F +  N +      + G+G 
Sbjct: 1255 MPAKDAQKKNEVSVLEVALEMILRGFSFLPPDIFKSDAKKFLIEGNSLRIPFNKLPGLGD 1314

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + A  I+ A  +KPF S+ED   R    K +  +++SL   G L
Sbjct: 1315 SVAESIIRAREEKPFTSVEDLMKRTKVNKNHIELMKSLGVLGDL 1358


>gi|254413650|ref|ZP_05027420.1| OB-fold nucleic acid binding domain protein [Microcoleus
            chthonoplastes PCC 7420]
 gi|196179757|gb|EDX74751.1| OB-fold nucleic acid binding domain protein [Microcoleus
            chthonoplastes PCC 7420]
          Length = 386

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 120/265 (45%), Gaps = 25/265 (9%)

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A +T    N +K++K+        I ++ P +N   VDF     +I +  +AI+ +G 
Sbjct: 1    MTALLTASSGNQDKVQKYIATCTTMGIDVLQPDINRSHVDFTPVSGKILFGFSAIRNLGE 60

Query: 848  TTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 I+ +   D  F SL DFC RV+ + +NRR LESL+++GA D    +R QL+  LD
Sbjct: 61   GAIETILHQREKDGDFQSLADFCDRVELRVVNRRALESLIYSGAFDRLESNRKQLINDLD 120

Query: 907  NIQKYAQWVEKNRTNKHENIF---------------AHEKGTFSDKITLEKFSVENSSVR 951
             +  + Q   K+R +   NIF               A +    + K+  E FS +    +
Sbjct: 121  VLISWGQDRAKDRQSGQINIFDVLEDADTNNSERNNAWKAAPKTPKV--EDFSAQE---K 175

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK---K 1008
               E+ +LGFY S HPL   +P   ++        +A      I L+A+V+  + K    
Sbjct: 176  LLQEKELLGFYVSDHPLKSVRPFANQVLTPINLNELADQNKRTI-LSAIVMLTEVKFHVT 234

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
               G R+ +V   +   + +   FP
Sbjct: 235  KTSGDRMAFVQMEDLTGQADGVIFP 259


>gi|293556647|ref|ZP_06675212.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
 gi|291601182|gb|EFF31469.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
          Length = 1450

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 165/807 (20%), Positives = 299/807 (37%), Gaps = 210/807 (26%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V++  + +  +VAT N  +L+EED     +L+   +S   +        PD + +   E
Sbjct: 724  LVEIGKSLDKIVVATGNVHYLNEEDAIYRKILI---NSMGGANPLNRHSLPDVHFRTTDE 780

Query: 260  MVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            M++ F  L E       +ENT +IA  C  ++ V                    ++EL  
Sbjct: 781  MLTAFHFLGEETAKEIVVENTNKIADICEEVIPV--------------------KDELYT 820

Query: 314  KAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              + G E  +++ +  K          +  ++RL+ ELN I    FS  +LI    +  +
Sbjct: 821  PKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSINGNGFSVIYLIAQKLVHKS 880

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
             ++   VG  RGS   S  A    IT+++PL                             
Sbjct: 881  NEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEK 939

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D + E   Y +  +G + V + 
Sbjct: 940  QCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRA 999

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V       Y + + L                     +FR A     
Sbjct: 1000 GTIGTVADKTAYGYV-----KGYERDNNL---------------------QFRSAE---- 1029

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----------- 555
             VDRL   ++   G+ R    H  GI++        +P Y DV    P+           
Sbjct: 1030 -VDRL---AKGATGVKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQNSEW 1077

Query: 556  --TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL- 612
              T F+   I    ++K D LG    T+++   D        +D   IP DD E   +  
Sbjct: 1078 KTTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDLSG-----IDPQTIPTDDPEVMRIFA 1131

Query: 613  -------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
                         +  GTLGI +  +  +R  LE   P    +++ +  L     +    
Sbjct: 1132 GPEVLGVSQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDV---- 1187

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                  N +E I      +  ++     +++Y    +  A L SG +    + +R+    
Sbjct: 1188 ---WLGNAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWN 1240

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KI +E+   +E ++S   +N +      +  ++      Y F K+HAAAY +++ + A+ 
Sbjct: 1241 KIPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYF 1292

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFC-------QDARQFNIQIMPPSV----------- 821
            K ++P+ +  A  ++  D+ + +   C       Q  ++   + +  SV           
Sbjct: 1293 KVYFPILYYCAYFSVRADDFDLV-SMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLEL 1351

Query: 822  -----------------NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
                              +  V+F +  + +     A+  +GT  A+ I+EA  D PF S
Sbjct: 1352 ANEMLERGFKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLS 1411

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGAL 891
             ED  +R    K+++ ++E +   G L
Sbjct: 1412 KEDLATR---GKVSKTLIEYMNDNGVL 1435


>gi|257894713|ref|ZP_05674366.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
 gi|257831092|gb|EEV57699.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
          Length = 1450

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 165/807 (20%), Positives = 299/807 (37%), Gaps = 210/807 (26%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V++  + +  +VAT N  +L+EED     +L+   +S   +        PD + +   E
Sbjct: 724  LVEIGKSLDKIVVATGNVHYLNEEDAIYRKILI---NSMGGANPLNRHSLPDVHFRTTDE 780

Query: 260  MVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            M++ F  L E       +ENT +IA  C  ++ V                    ++EL  
Sbjct: 781  MLTAFHFLGEETAKEIVVENTNKIADICEEVIPV--------------------KDELYT 820

Query: 314  KAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              + G E  +++ +  K          +  ++RL+ ELN I    FS  +LI    +  +
Sbjct: 821  PKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSINGNGFSVIYLIAQKLVHKS 880

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
             ++   VG  RGS   S  A    IT+++PL                             
Sbjct: 881  NEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEK 939

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D + E   Y +  +G + V + 
Sbjct: 940  QCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRA 999

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V       Y + + L                     +FR A     
Sbjct: 1000 GTIGTVADKTAYGYV-----KGYERDNNL---------------------QFRSAE---- 1029

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----------- 555
             VDRL   ++   G+ R    H  GI++        +P Y DV    P+           
Sbjct: 1030 -VDRL---AKGATGVKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQNSEW 1077

Query: 556  --TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL- 612
              T F+   I    ++K D LG    T+++   D        +D   IP DD E   +  
Sbjct: 1078 KTTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDLSG-----IDPQTIPTDDPEVMRIFA 1131

Query: 613  -------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
                         +  GTLGI +  +  +R  LE   P    +++ +  L     +    
Sbjct: 1132 GPEVLGVSQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDV---- 1187

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                  N +E I      +  ++     +++Y    +  A L SG +    + +R+    
Sbjct: 1188 ---WLGNAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWN 1240

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KI +E+   +E ++S   +N +      +  ++      Y F K+HAAAY +++ + A+ 
Sbjct: 1241 KIPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYF 1292

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFC-------QDARQFNIQIMPPSV----------- 821
            K ++P+ +  A  ++  D+ + +   C       Q  ++   + +  SV           
Sbjct: 1293 KVYFPILYYCAYFSVRADDFDLV-SMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLEL 1351

Query: 822  -----------------NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
                              +  V+F +  + +     A+  +GT  A+ I+EA  D PF S
Sbjct: 1352 ANEMLERGFKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLS 1411

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGAL 891
             ED  +R    K+++ ++E +   G L
Sbjct: 1412 KEDLATR---GKVSKTLIEYMNDNGVL 1435


>gi|257884340|ref|ZP_05663993.1| DNA polymerase III [Enterococcus faecium 1,231,501]
 gi|257820178|gb|EEV47326.1| DNA polymerase III [Enterococcus faecium 1,231,501]
          Length = 1450

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 165/807 (20%), Positives = 299/807 (37%), Gaps = 210/807 (26%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V++  + +  +VAT N  +L+EED     +L+   +S   +        PD + +   E
Sbjct: 724  LVEIGKSLDKIVVATGNVHYLNEEDAIYRKILI---NSMGGANPLNRHSLPDVHFRTTDE 780

Query: 260  MVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            M++ F  L E       +ENT +IA  C  ++ V                    ++EL  
Sbjct: 781  MLTAFHFLGEETAKEIVVENTNKIADICEEVIPV--------------------KDELYT 820

Query: 314  KAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              + G E  +++ +  K          +  ++RL+ ELN I    FS  +LI    +  +
Sbjct: 821  PKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSINGNGFSVIYLIAQKLVHKS 880

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
             ++   VG  RGS   S  A    IT+++PL                             
Sbjct: 881  NEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEK 939

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D + E   Y +  +G + V + 
Sbjct: 940  QCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRA 999

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V       Y + + L                     +FR A     
Sbjct: 1000 GTIGTVADKTAYGYV-----KGYERDNNL---------------------QFRSAE---- 1029

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----------- 555
             VDRL   ++   G+ R    H  GI++        +P Y DV    P+           
Sbjct: 1030 -VDRL---AKGATGVKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQNSEW 1077

Query: 556  --TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL- 612
              T F+   I    ++K D LG    T+++   D        +D   IP DD E   +  
Sbjct: 1078 KTTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDLSG-----IDPQTIPTDDPEVMRIFA 1131

Query: 613  -------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
                         +  GTLGI +  +  +R  LE   P    +++ +  L     +    
Sbjct: 1132 GPEVLGVSQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDV---- 1187

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                  N +E I      +  ++     +++Y    +  A L SG +    + +R+    
Sbjct: 1188 ---WLGNAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWN 1240

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KI +E+   +E ++S   +N +      +  ++      Y F K+HAAAY +++ + A+ 
Sbjct: 1241 KIPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYF 1292

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFC-------QDARQFNIQIMPPSV----------- 821
            K ++P+ +  A  ++  D+ + +   C       Q  ++   + +  SV           
Sbjct: 1293 KVYFPILYYCAYFSVRADDFDLV-SMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLEL 1351

Query: 822  -----------------NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
                              +  V+F +  + +     A+  +GT  A+ I+EA  D PF S
Sbjct: 1352 ANEMLERGFKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLS 1411

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGAL 891
             ED  +R    K+++ ++E +   G L
Sbjct: 1412 KEDLATR---GKVSKTLIEYMNDNGVL 1435


>gi|294613939|ref|ZP_06693874.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
 gi|291593214|gb|EFF24788.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
          Length = 1450

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 165/807 (20%), Positives = 299/807 (37%), Gaps = 210/807 (26%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V++  + +  +VAT N  +L+EED     +L+   +S   +        PD + +   E
Sbjct: 724  LVEIGKSLDKIVVATGNVHYLNEEDAIYRKILI---NSMGGANPLNRHSLPDVHFRTTDE 780

Query: 260  MVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            M++ F  L E       +ENT +IA  C  ++ V                    ++EL  
Sbjct: 781  MLTAFHFLGEETAKEIVVENTNKIADICEEVIPV--------------------KDELYT 820

Query: 314  KAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              + G E  +++ +  K          +  ++RL+ ELN I    FS  +LI    +  +
Sbjct: 821  PKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSINGNGFSVIYLIAQKLVHKS 880

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
             ++   VG  RGS   S  A    IT+++PL                             
Sbjct: 881  NEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEK 939

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D + E   Y +  +G + V + 
Sbjct: 940  QCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRA 999

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V       Y + + L                     +FR A     
Sbjct: 1000 GTIGTVADKTAYGYV-----KGYERDNNL---------------------QFRSAE---- 1029

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----------- 555
             VDRL   ++   G+ R    H  GI++        +P Y DV    P+           
Sbjct: 1030 -VDRL---AKGATGVKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQNSEW 1077

Query: 556  --TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL- 612
              T F+   I    ++K D LG    T+++   D        +D   IP DD E   +  
Sbjct: 1078 KTTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDLSG-----IDPQTIPTDDPEVMRIFA 1131

Query: 613  -------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
                         +  GTLGI +  +  +R  LE   P    +++ +  L     +    
Sbjct: 1132 GPEVLGVSQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDV---- 1187

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                  N +E I      +  ++     +++Y    +  A L SG +    + +R+    
Sbjct: 1188 ---WLGNAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWN 1240

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KI +E+   +E ++S   +N +      +  ++      Y F K+HAAAY +++ + A+ 
Sbjct: 1241 KIPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYF 1292

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFC-------QDARQFNIQIMPPSV----------- 821
            K ++P+ +  A  ++  D+ + +   C       Q  ++   + +  SV           
Sbjct: 1293 KVYFPILYYCAYFSVRADDFDLV-SMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLEL 1351

Query: 822  -----------------NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
                              +  V+F +  + +     A+  +GT  A+ I+EA  D PF S
Sbjct: 1352 ANEMLERGFKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLS 1411

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGAL 891
             ED  +R    K+++ ++E +   G L
Sbjct: 1412 KEDLATR---GKVSKTLIEYMNDNGVL 1435


>gi|257878528|ref|ZP_05658181.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|293567721|ref|ZP_06679063.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E1071]
 gi|294618725|ref|ZP_06698257.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E1679]
 gi|294620761|ref|ZP_06699968.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium U0317]
 gi|257812756|gb|EEV41514.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|291589564|gb|EFF21370.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E1071]
 gi|291595038|gb|EFF26383.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E1679]
 gi|291599741|gb|EFF30751.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium U0317]
          Length = 1450

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 165/807 (20%), Positives = 299/807 (37%), Gaps = 210/807 (26%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V++  + +  +VAT N  +L+EED     +L+   +S   +        PD + +   E
Sbjct: 724  LVEIGKSLDKIVVATGNVHYLNEEDAIYRKILI---NSMGGANPLNRHSLPDVHFRTTDE 780

Query: 260  MVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            M++ F  L E       +ENT +IA  C  ++ V                    ++EL  
Sbjct: 781  MLTAFHFLGEETAKEIVVENTNKIADICEEVIPV--------------------KDELYT 820

Query: 314  KAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              + G E  +++ +  K          +  ++RL+ ELN I    FS  +LI    +  +
Sbjct: 821  PKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSINGNGFSVIYLIAQKLVHKS 880

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
             ++   VG  RGS   S  A    IT+++PL                             
Sbjct: 881  NEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEK 939

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D + E   Y +  +G + V + 
Sbjct: 940  QCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRA 999

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V       Y + + L                     +FR A     
Sbjct: 1000 GTIGTVADKTAYGYV-----KGYERDNNL---------------------QFRSAE---- 1029

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----------- 555
             VDRL   ++   G+ R    H  GI++        +P Y DV    P+           
Sbjct: 1030 -VDRL---AKGATGVKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQNSEW 1077

Query: 556  --TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL- 612
              T F+   I    ++K D LG    T+++   D        +D   IP DD E   +  
Sbjct: 1078 KTTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDLSG-----IDPQTIPTDDPEVMRIFA 1131

Query: 613  -------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
                         +  GTLGI +  +  +R  LE   P    +++ +  L     +    
Sbjct: 1132 GPEVLGVSQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDV---- 1187

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                  N +E I      +  ++     +++Y    +  A L SG +    + +R+    
Sbjct: 1188 ---WLGNAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWN 1240

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KI +E+   +E ++S   +N +      +  ++      Y F K+HAAAY +++ + A+ 
Sbjct: 1241 KIPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYF 1292

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFC-------QDARQFNIQIMPPSV----------- 821
            K ++P+ +  A  ++  D+ + +   C       Q  ++   + +  SV           
Sbjct: 1293 KVYFPILYYCAYFSVRADDFDLV-SMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLEL 1351

Query: 822  -----------------NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
                              +  V+F +  + +     A+  +GT  A+ I+EA  D PF S
Sbjct: 1352 ANEMLERGFKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLS 1411

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGAL 891
             ED  +R    K+++ ++E +   G L
Sbjct: 1412 KEDLATR---GKVSKTLIEYMNDNGVL 1435


>gi|319401446|gb|EFV89656.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis FRI909]
          Length = 1438

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 203/935 (21%), Positives = 351/935 (37%), Gaps = 232/935 (24%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+TN+          + L+V   EG + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVKYYYRTPRIPRSLLNEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL-QRHRGYDRYRES 198
            EG+++ T    G +  A         EK  +   F ++    LY +L  R    D    +
Sbjct: 655  EGILIGTACDEGELFTAVMQKDQSEVEKIAKFYDFIEVQPPALYQDLMDRELIRDNETLT 714

Query: 199  QV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            Q+    +    +  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 715  QIYKRLIDAGKSANIPVIATGNAHYLFEHDAIARKILIA-------SQPGNPLNRSTLPE 767

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + +   EM+  F  L E       + NT E+A +   ++    PI  +      D    
Sbjct: 768  AHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELADKIEKVV----PIKDKLFTPRMDG--- 820

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVA 361
                       A  E+R    + AK  + +D  Q    RL+ EL+ I    FS  +LI  
Sbjct: 821  -----------ANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSIIGNGFSVIYLISQ 869

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------R 399
              ++ +  +   VG  RGS   S  A    IT+++PL                       
Sbjct: 870  RLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFDDGSVGSG 928

Query: 400  FSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
            F L                    FE FL      +PD D++F  + +     Y +  +G 
Sbjct: 929  FDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFGE 988

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            ++V +  T G++  K A   V   L               ND       Q I        
Sbjct: 989  DKVFRAGTIGTVAEKTAFGFVKGYL---------------ND-------QGI-------H 1019

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----- 555
             R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+     
Sbjct: 1020 KRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQFPAD 1066

Query: 556  --------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                    T F+   I    ++K D LG    T+++     + Q    +D   IP DD E
Sbjct: 1067 DQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIR-----MLQDLSGIDPKTIPVDDKE 1120

Query: 608  TYH--------------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            T                +L   GT G+ +  +  +RQ LE  +P    +++ +  L    
Sbjct: 1121 TMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGT 1180

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               ++ + N ++  ++ I  +  +I         +++Y    +  A L    +    + +
Sbjct: 1181 ---DVWLGNAQELIRQGICDLSSVIGC----RDDIMVY----LMYAGLEPSMAFKTMEFV 1229

Query: 714  RRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            R+  G+ + +EM +  KE  +     +   K               Y F K+HAAAY ++
Sbjct: 1230 RK--GRGLTDEMVEAMKENNVPDWYLDSCRKI-------------KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDA-------------- 809
            + + A+ K H+P+ + AA  T+   + +          I+   +D               
Sbjct: 1275 AVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1334

Query: 810  ------------RQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                        R F +Q  P S+  +   DF +  + +     ++ G+G   A+ I+EA
Sbjct: 1335 LTVLEIMNEMAHRGFRLQ--PISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEA 1392

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              + PF S ED   +     L+++V++ L   G+L
Sbjct: 1393 REEGPFLSKEDLNKKA---GLSQKVIDYLDELGSL 1424


>gi|82750865|ref|YP_416606.1| DNA polymerase III PolC [Staphylococcus aureus RF122]
 gi|123549060|sp|Q2YXK4|DPO3_STAAB RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|82656396|emb|CAI80815.1| DNA polymerase III [Staphylococcus aureus RF122]
          Length = 1438

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 205/936 (21%), Positives = 355/936 (37%), Gaps = 234/936 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++NQ          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLSNQDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYR 196
            EGL++ T    G +  A         EK  +   F ++    LY +L   +  R  +   
Sbjct: 655  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDLIDRELIRDTETLH 714

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            E   +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 715  EIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLPE 767

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR          
Sbjct: 768  AHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM--------- 818

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             E  NE         E+R    A A+  + +D  Q    RL+ EL  I    F+  +LI 
Sbjct: 819  -EGANE---------EIRELSYANARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLIS 868

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 869  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGS 927

Query: 399  RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE FL      +PD D++F  + +     Y +  +G
Sbjct: 928  GFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 987

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND       Q I       
Sbjct: 988  EDKVFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI------- 1018

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
              R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+    
Sbjct: 1019 HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPA 1065

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1119

Query: 607  ETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E   + +T               GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +          N +E       LI   + +   VI  ++ +M +  + +G        
Sbjct: 1180 TDV-------WLGNAQE-------LIKTGICDLSSVIGCRDDIM-VYLMYAG-------- 1216

Query: 713  LRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            L  +M  KI E + K K   E  I    +N +      +  ++      Y F K+HAAAY
Sbjct: 1217 LEPSMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAY 1271

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--ARQFNI---- 814
             +++ + A+ K H+P+ + A+  T+   + +          I+   +D  +R  ++    
Sbjct: 1272 VLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKE 1331

Query: 815  ------------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                              ++ P S+  +   +F +  + +     ++ G+G   A+ I+E
Sbjct: 1332 KDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVE 1391

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  D PF S ED   +     L+++++E L   G+L
Sbjct: 1392 ARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSL 1424


>gi|134299812|ref|YP_001113308.1| DNA polymerase III subunit alpha [Desulfotomaculum reducens MI-1]
 gi|134052512|gb|ABO50483.1| DNA polymerase III catalytic subunit, PolC type [Desulfotomaculum
            reducens MI-1]
          Length = 1426

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 194/906 (21%), Positives = 342/906 (37%), Gaps = 207/906 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            + +LV    G + L +L++  +L    +Q  RI    L +   EGL++ +   +G   +A
Sbjct: 605  VTILVKDEVGLKNLYQLITLSHLRYFHRQP-RIPRRELVKY-REGLLIGSACEAGEFYQA 662

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
                +SQ   + + +F      + L  +   +   +  G +  +E   ++V L     +P
Sbjct: 663  LMAGASQEELEDIASFYDYLEIQPLGNNEFMIRTGQVNGEEDLKEINRKIVALGSKLGIP 722

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL--P 268
            +VAT +  FL+ ED     +LMA          D     P  Y K   EM+  FS L   
Sbjct: 723  VVATGDVHFLNPEDEVYRRILMAGK-----GFDDADNQAP-LYFKTTEEMLKEFSYLGRE 776

Query: 269  EALENTVEIARRCSFILQVHAPI----LPRFI---EKECDDIQKEEENELRNKAVAGLEV 321
             A +  V   R  + ++Q   PI     P +I   E++  D+  +   EL  + +  +  
Sbjct: 777  TAFQVVVSNPRNIASMIQAFKPIPDTLHPPYIEGAEQQITDMTLQRARELYGEPLPEV-- 834

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                            +QR+D EL  I    F+  +LI    ++ +  +   VG  RGS 
Sbjct: 835  ---------------VQQRVDKELKSIIGNGFAVLYLIAHKLVKKSLDDGYLVG-SRGSV 878

Query: 382  AGSVTAYALTITDIDPL-----------------------------------------RF 400
              S+ A    IT+++PL                                           
Sbjct: 879  GSSLVATFTNITEVNPLPPHYRCPNCLNSEFLMDGSAGCGADMPDKNCPKCGTNYIKDGH 938

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL  D   +PD D++F  D +    +Y +  +G + V +  T G++  K A   
Sbjct: 939  DIPFEVFLGFDGDKVPDIDLNFSGDYQPRAHKYTEELFGKDYVYRAGTIGTIAEKTAFGF 998

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V                                  + F E  +   S + +  +     G
Sbjct: 999  V---------------------------------KNYFEERNIKKRSAE-MKRLVLGCAG 1024

Query: 521  LYRHASTHAAGIVIGDRPLS--QLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + R    H  G+++    L      P+ R   DV+SD   T F+   I  + L+K D LG
Sbjct: 1025 VKRTTGQHPGGLMVVPNSLDVHMFTPVQRPADDVKSDTRTTHFDYHSIHDS-LVKLDILG 1083

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIF 621
                T+++   D  +     V+   IP DD +T  L  +               GT  I 
Sbjct: 1084 HDDPTVIRMLEDLTS-----VNAREIPLDDPKTMSLFASTDALGVTPEDIRSQVGTYAIP 1138

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            +  +  +RQ L   +P    +++  +S +  G   ++ + N +   KE    +   I   
Sbjct: 1139 EFGTKFVRQMLVDTKPTTFSELVR-ISGFSHGT--DVWLNNAQDLIKEGTCKLSEAISAR 1195

Query: 682  LKETQGVIIYQE-QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
              +    +IYQ     Q  +++ G        +R+  GK +KEE D +  R         
Sbjct: 1196 -DDIMVYLIYQGLPPKQAFKIMEG--------VRK--GKGVKEE-DAEAMR--------- 1234

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             S+ +     E   K   Y F K+HA AY +++++ AW K + P  F AA  T+  D+ +
Sbjct: 1235 -SQGVPEWYIESCRKIK-YMFPKAHATAYVMMAFRIAWFKVYRPEAFYAAYFTVRADDFD 1292

Query: 801  ---------KIKKFCQ------------------------DARQFNIQIMPPSV-NTPCV 826
                     KIK+  +                        +A    I+I+P ++  +   
Sbjct: 1293 AELMVSGPNKIKQVIEEIEEKGNAASQKEKNMLTILEVALEANCRGIKILPVNLEKSDAT 1352

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             F +    +      ++GVG + A++I+ A    PF S++D  +R    K+++ V+E L 
Sbjct: 1353 KFLITPEGLLSPFGGLQGVGASAAKNIVAAREQAPFTSIDDLRNRA---KISKTVIEVLQ 1409

Query: 887  FAGALD 892
              G L+
Sbjct: 1410 NHGCLN 1415


>gi|255658412|ref|ZP_05403821.1| DNA polymerase III, alpha subunit [Mitsuokella multacida DSM 20544]
 gi|260849748|gb|EEX69755.1| DNA polymerase III, alpha subunit [Mitsuokella multacida DSM 20544]
          Length = 1329

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 216/1018 (21%), Positives = 372/1018 (36%), Gaps = 259/1018 (25%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA---CAAGIQ 68
            V L  H++ S ++  +S+ +++        PA+A+TD + +  A   + KA   C + ++
Sbjct: 422  VELHAHTTMSSMDAVVSVKDLIKTADRWGWPAVAVTD-HGVVQAFPDAAKALSSCKSDLK 480

Query: 69   PIIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             I G +  +  +D+L K  N           I++L     G + L +LVS  +L    +Q
Sbjct: 481  VIYGMEGYLVQKDHLQKRANH----------IIMLAKNPNGLRNLYQLVSLAHLRYFHRQ 530

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+    ++E  + GL++ +   +G + RA      Q  ++ L+     + D L +   
Sbjct: 531  P-RLPKHIIEEYRS-GLLIGSACEAGELIRAI---EEQRTDEELMEIASFY-DYLEIQPI 584

Query: 188  RHRGY----DRYRESQ-----------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
             +  +    D+Y + Q           V ++A     PLVAT +  FL+ ED     +LM
Sbjct: 585  HNNDFLKRSDKYPDIQTDEDLIQINLKVAEIAKKLGKPLVATCDVHFLNPEDSIYRAILM 644

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAP 290
                       D   + P  YL+   EM+  F  L E  A E  V   R+ +  ++   P
Sbjct: 645  K------GKGFDDAELQPPLYLRTTDEMLKEFEYLGEEAAYEAVVTNPRKIADQIERFKP 698

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGL--EVRLAQGAIAKGYHAQDY----RQRLDFE 344
            I                 ++L +  + G   E+R      A+  + ++       RL  E
Sbjct: 699  I----------------PDDLYSPQIPGADEEIREMSYKKARALYGENLPKIVEDRLKQE 742

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------ 398
            L  I    FS  +LI    ++ +  +   VG  RGS   S  A    IT+++PL      
Sbjct: 743  LKPIIGHGFSVLYLIAQRLVKKSNDDGYLVG-SRGSVGSSFIATMTGITEVNPLPPHWRC 801

Query: 399  ------RF-----------------------------SLLFERFLNPDRMSMPDFDIDFC 423
                  +F                              + F  FL  D   +PD D++F 
Sbjct: 802  PHCQYSKFITDGSYGCGYDLPDKVCPVCGTPLIKDGHDIPFAVFLGFDGDKVPDIDLNFS 861

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
               +    +Y +  +G + V +    GS+Q  A     G                     
Sbjct: 862  GAYQPVAHKYTEILFGKDNVYRA---GSIQTVADKTAFGYV------------------- 899

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ-- 541
                         +F E +     +  + +++    G+      H AGI++  R +    
Sbjct: 900  ------------KKFYEEKGVKKHISYIDKMAHGCMGVKSTTGQHPAGIMVVPRNMDVHF 947

Query: 542  LVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
              P+     D+      T F+   I  + L+K D LG    T++ K L+ L  R    D 
Sbjct: 948  FTPIQHPANDMNCGTITTHFDYHSI-SSRLVKLDILGHDDPTVI-KMLEDLTHR----DP 1001

Query: 599  SLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
              IPFDD  T  +                T GT GI +  +   RQ ++  QPD   D++
Sbjct: 1002 KTIPFDDAATMSIFNSTTALGVTPEELGATSGTFGIPEFRTPFTRQMIDDTQPDVFSDLV 1061

Query: 645  ALVSLYRP-----GPIDNIV-----VYNNRKNGKEKIVS--IHPLIDPMLKETQGVIIYQ 692
             +           G   +++        N  + ++ I+   IH  IDP+L          
Sbjct: 1062 RISGFSHGTDVWLGNAQDLIRSGQCTIKNAISARDDIMMYLIHNGIDPLL---------S 1112

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
             + M+  +   G +    ++LR+              E FI    K              
Sbjct: 1113 FKTMEKVRKGRGIADDVVEILRKG----------GIPEWFIESCQK-------------- 1148

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL------------------ 794
                  Y F ++HA AY +++Y+ A+ K HYP+ + AA  ++                  
Sbjct: 1149 ----IKYLFPRAHATAYVMMAYRIAYCKVHYPLAYYAAYFSIRAAEFDANVIARGKDYVG 1204

Query: 795  ----EMDNVEKIKKFCQDAR--------QFNIQIMPPSVNTPCVD--------FKVGDNR 834
                E++ + K KK   DA+        Q   ++     +   VD        F +  N 
Sbjct: 1205 QQIKELEAMGKEKKL--DAKQNATLIVLQLAWEMYLRGYSCERVDLYRSGADKFIIDGNA 1262

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +   +AA+ G+G   A+ I+EA  +  F S+ED   R    K N  +L S    G LD
Sbjct: 1263 LLPPIAALAGMGQKAAQGIVEARKEGAFTSIEDLRRRSGISKTNIEILRS---HGCLD 1317


>gi|227551758|ref|ZP_03981807.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|227179063|gb|EEI60035.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
          Length = 1450

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 164/807 (20%), Positives = 299/807 (37%), Gaps = 210/807 (26%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V++  + +  +VAT N  +L+EED     +L+   +S   +        PD + +   E
Sbjct: 724  LVEIGKSLDKIVVATGNVHYLNEEDVIYRKILI---NSMGGANPLNRHSLPDVHFRTTDE 780

Query: 260  MVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            M++ F  L E       ++NT +IA  C  ++ V                    ++EL  
Sbjct: 781  MLTAFHFLGEETAKEIVVDNTNKIADICEEVIPV--------------------KDELYT 820

Query: 314  KAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              + G E  +++ +  K          +  ++RL+ ELN I    FS  +LI    +  +
Sbjct: 821  PKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSINGNGFSVIYLIAQKLVHKS 880

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
             ++   VG  RGS   S  A    IT+++PL                             
Sbjct: 881  NEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEK 939

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D + E   Y +  +G + V + 
Sbjct: 940  QCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRA 999

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V       Y + + L                     +FR A     
Sbjct: 1000 GTIGTVADKTAYGYV-----KGYERDNNL---------------------QFRSAE---- 1029

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----------- 555
             VDRL   ++   G+ R    H  GI++        +P Y DV    P+           
Sbjct: 1030 -VDRL---AKGATGVKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQNSEW 1077

Query: 556  --TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL- 612
              T F+   I    ++K D LG    T+++   D        +D   IP DD E   +  
Sbjct: 1078 KTTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDLSG-----IDPQTIPTDDPEVMRIFA 1131

Query: 613  -------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
                         +  GTLGI +  +  +R  LE   P    +++ +  L     +    
Sbjct: 1132 GPEVLGVTQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDV---- 1187

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                  N +E I      +  ++     +++Y    +  A L SG +    + +R+    
Sbjct: 1188 ---WLGNAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWN 1240

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KI +E+   +E ++S   +N +      +  ++      Y F K+HAAAY +++ + A+ 
Sbjct: 1241 KIPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYF 1292

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFC-------QDARQFNIQIMPPSV----------- 821
            K ++P+ +  A  ++  D+ + +   C       Q  ++   + +  SV           
Sbjct: 1293 KVYFPILYYCAYFSVRADDFDLV-SMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLEL 1351

Query: 822  -----------------NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
                              +  V+F +  + +     A+  +GT  A+ I+EA  D PF S
Sbjct: 1352 ANEMLERGFKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLS 1411

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGAL 891
             ED  +R    K+++ ++E +   G L
Sbjct: 1412 KEDLATR---GKVSKTLIEYMNDNGVL 1435


>gi|261207399|ref|ZP_05922085.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289566679|ref|ZP_06447096.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium D344SRF]
 gi|260078290|gb|EEW65995.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289161538|gb|EFD09421.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium D344SRF]
          Length = 1452

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 165/807 (20%), Positives = 298/807 (36%), Gaps = 210/807 (26%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V++  + +  +VAT N  +L+EED     +L+   +S   +        PD + +   E
Sbjct: 726  LVEIGKSLDKIVVATGNVHYLNEEDAIYRKILI---NSMGGANPLNRHSLPDVHFRTTDE 782

Query: 260  MVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            M++ F  L E       +ENT +IA  C  ++ V                    ++EL  
Sbjct: 783  MLTAFHFLGEETAKEIVVENTNKIADICEEVIPV--------------------KDELYT 822

Query: 314  KAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              + G E  +++ +  K          +  ++RL  ELN I    FS  +LI    +  +
Sbjct: 823  PKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLKKELNSINGNGFSVIYLIAQKLVHKS 882

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
             ++   VG  RGS   S  A    IT+++PL                             
Sbjct: 883  NEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEK 941

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D + E   Y +  +G + V + 
Sbjct: 942  QCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRA 1001

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V       Y + + L                     +FR A     
Sbjct: 1002 GTIGTVADKTAYGYV-----KGYERDNNL---------------------QFRSAE---- 1031

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----------- 555
             VDRL   ++   G+ R    H  GI++        +P Y DV    P+           
Sbjct: 1032 -VDRL---AKGATGVKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQNSEW 1079

Query: 556  --TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL- 612
              T F+   I    ++K D LG    T+++   D        +D   IP DD E   +  
Sbjct: 1080 KTTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDLSG-----IDPQTIPTDDPEVMRIFA 1133

Query: 613  -------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
                         +  GTLGI +  +  +R  LE   P    +++ +  L     +    
Sbjct: 1134 GPEVLGVSQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDV---- 1189

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                  N +E I      +  ++     +++Y    +  A L SG +    + +R+    
Sbjct: 1190 ---WLGNAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWN 1242

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KI +E+   +E ++S   +N +      +  ++      Y F K+HAAAY +++ + A+ 
Sbjct: 1243 KIPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYF 1294

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFC-------QDARQFNIQIMPPSV----------- 821
            K ++P+ +  A  ++  D+ + +   C       Q  ++   + +  SV           
Sbjct: 1295 KVYFPILYYCAYFSVRADDFDLV-SMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLEL 1353

Query: 822  -----------------NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
                              +  V+F +  + +     A+  +GT  A+ I+EA  D PF S
Sbjct: 1354 ANEMLERGFKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLS 1413

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGAL 891
             ED  +R    K+++ ++E +   G L
Sbjct: 1414 KEDLATR---GKVSKTLIEYMNDNGVL 1437


>gi|69246860|ref|ZP_00604152.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
            subunit, Gram-positive type [Enterococcus faecium DO]
 gi|257882946|ref|ZP_05662599.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257889275|ref|ZP_05668928.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260560113|ref|ZP_05832291.1| DNA polymerase III [Enterococcus faecium C68]
 gi|293560202|ref|ZP_06676704.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E1162]
 gi|314937503|ref|ZP_07844836.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
 gi|314942162|ref|ZP_07849016.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
 gi|314947498|ref|ZP_07850913.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
 gi|314951485|ref|ZP_07854534.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
 gi|314992575|ref|ZP_07857993.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
 gi|314995490|ref|ZP_07860590.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
 gi|68195041|gb|EAN09504.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
            subunit, Gram-positive type [Enterococcus faecium DO]
 gi|257818604|gb|EEV45932.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257825635|gb|EEV52261.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260073948|gb|EEW62272.1| DNA polymerase III [Enterococcus faecium C68]
 gi|291605874|gb|EFF35306.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E1162]
 gi|313590324|gb|EFR69169.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
 gi|313592867|gb|EFR71712.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
 gi|313596325|gb|EFR75170.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
 gi|313599085|gb|EFR77930.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
 gi|313643144|gb|EFS07724.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
 gi|313646048|gb|EFS10628.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
          Length = 1452

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 165/807 (20%), Positives = 298/807 (36%), Gaps = 210/807 (26%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V++  + +  +VAT N  +L+EED     +L+   +S   +        PD + +   E
Sbjct: 726  LVEIGKSLDKIVVATGNVHYLNEEDAIYRKILI---NSMGGANPLNRHSLPDVHFRTTDE 782

Query: 260  MVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            M++ F  L E       +ENT +IA  C  ++ V                    ++EL  
Sbjct: 783  MLTAFHFLGEETAKEIVVENTNKIADICEEVIPV--------------------KDELYT 822

Query: 314  KAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              + G E  +++ +  K          +  ++RL  ELN I    FS  +LI    +  +
Sbjct: 823  PKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLKKELNSINGNGFSVIYLIAQKLVHKS 882

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
             ++   VG  RGS   S  A    IT+++PL                             
Sbjct: 883  NEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEK 941

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D + E   Y +  +G + V + 
Sbjct: 942  QCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRA 1001

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V       Y + + L                     +FR A     
Sbjct: 1002 GTIGTVADKTAYGYV-----KGYERDNNL---------------------QFRSAE---- 1031

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----------- 555
             VDRL   ++   G+ R    H  GI++        +P Y DV    P+           
Sbjct: 1032 -VDRL---AKGATGVKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQNSEW 1079

Query: 556  --TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL- 612
              T F+   I    ++K D LG    T+++   D        +D   IP DD E   +  
Sbjct: 1080 KTTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDLSG-----IDPQTIPTDDPEVMRIFA 1133

Query: 613  -------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
                         +  GTLGI +  +  +R  LE   P    +++ +  L     +    
Sbjct: 1134 GPEVLGVSQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDV---- 1189

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                  N +E I      +  ++     +++Y    +  A L SG +    + +R+    
Sbjct: 1190 ---WLGNAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWN 1242

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KI +E+   +E ++S   +N +      +  ++      Y F K+HAAAY +++ + A+ 
Sbjct: 1243 KIPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYF 1294

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFC-------QDARQFNIQIMPPSV----------- 821
            K ++P+ +  A  ++  D+ + +   C       Q  ++   + +  SV           
Sbjct: 1295 KVYFPILYYCAYFSVRADDFDLV-SMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLEL 1353

Query: 822  -----------------NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
                              +  V+F +  + +     A+  +GT  A+ I+EA  D PF S
Sbjct: 1354 ANEMLERGFKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLS 1413

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGAL 891
             ED  +R    K+++ ++E +   G L
Sbjct: 1414 KEDLATR---GKVSKTLIEYMNDNGVL 1437


>gi|257898236|ref|ZP_05677889.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
 gi|257836148|gb|EEV61222.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
          Length = 1450

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 164/807 (20%), Positives = 299/807 (37%), Gaps = 210/807 (26%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V++  + +  +VAT N  +L+EED     +L+   +S   +        PD + +   E
Sbjct: 724  LVEIGKSLDKIVVATGNVHYLNEEDAIYRKILI---NSMGGANPLNRHSLPDVHFRTTDE 780

Query: 260  MVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            M++ F  L E       ++NT +IA  C  ++ V                    ++EL  
Sbjct: 781  MLTAFHFLGEETAKEIVVDNTNKIADICEEVIPV--------------------KDELYT 820

Query: 314  KAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              + G E  +++ +  K          +  ++RL+ ELN I    FS  +LI    +  +
Sbjct: 821  PKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSINGNGFSVIYLIAQKLVHKS 880

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
             ++   VG  RGS   S  A    IT+++PL                             
Sbjct: 881  NEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEK 939

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D + E   Y +  +G + V + 
Sbjct: 940  QCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRA 999

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V       Y + + L                     +FR A     
Sbjct: 1000 GTIGTVADKTAYGYV-----KGYERDNNL---------------------QFRSAE---- 1029

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----------- 555
             VDRL   ++   G+ R    H  GI++        +P Y DV    P+           
Sbjct: 1030 -VDRL---AKGATGVKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQNSEW 1077

Query: 556  --TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL- 612
              T F+   I    ++K D LG    T+++   D        +D   IP DD E   +  
Sbjct: 1078 KTTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDLSG-----IDPQTIPTDDPEVMRIFA 1131

Query: 613  -------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
                         +  GTLGI +  +  +R  LE   P    +++ +  L     +    
Sbjct: 1132 GPEVLGVTQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDV---- 1187

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                  N +E I      +  ++     +++Y    +  A L SG +    + +R+    
Sbjct: 1188 ---WLGNAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWN 1240

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KI +E+   +E ++S   +N +      +  ++      Y F K+HAAAY +++ + A+ 
Sbjct: 1241 KIPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYF 1292

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFC-------QDARQFNIQIMPPSV----------- 821
            K ++P+ +  A  ++  D+ + +   C       Q  ++   + +  SV           
Sbjct: 1293 KVYFPILYYCAYFSVRADDFDLV-SMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLEL 1351

Query: 822  -----------------NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
                              +  V+F +  + +     A+  +GT  A+ I+EA  D PF S
Sbjct: 1352 ANEMLERGYKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLS 1411

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGAL 891
             ED  +R    K+++ ++E +   G L
Sbjct: 1412 KEDLATR---GKVSKTLIEYMNDNGVL 1435


>gi|253733498|ref|ZP_04867663.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728552|gb|EES97281.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH130]
          Length = 1438

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 202/936 (21%), Positives = 354/936 (37%), Gaps = 234/936 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYR 196
            EGL++ T    G +  A         EK  +   F ++    LY +L   +  R  +   
Sbjct: 655  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKFYDFIEIQPPALYQDLIDRELIRDTETLH 714

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            E   +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 715  EIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLPE 767

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR          
Sbjct: 768  AHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM--------- 818

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             E  NE         E+R    A A+  + +D  Q    RL+ EL  I    F+  +LI 
Sbjct: 819  -EGANE---------EIRELSYANARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLIS 868

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 869  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGS 927

Query: 399  RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE FL      +PD D++F  + +     Y +  +G
Sbjct: 928  GFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 987

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND       Q I       
Sbjct: 988  EDKVFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI------- 1018

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
              R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+    
Sbjct: 1019 HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPA 1065

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1119

Query: 607  ETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E   + +T               GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +               + +   LI   + +   VI  ++ +M +  + +G        
Sbjct: 1180 TDV--------------WLGNAQELIKSGICDLSSVIGCRDDIM-VYLMYAG-------- 1216

Query: 713  LRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            L  +M  KI E + K K   E  I    +N +      +  ++      Y F K+HAAAY
Sbjct: 1217 LEPSMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAY 1271

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--ARQFNI---- 814
             +++ + A+ K H+P+ + A+  T+   + +          I+   +D  +R  ++    
Sbjct: 1272 VLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKE 1331

Query: 815  ------------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                              ++ P S+  +   +F +  + +     ++ G+G   A+ I+E
Sbjct: 1332 KDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVE 1391

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  D PF S ED   +     L+++++E L   G+L
Sbjct: 1392 ARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSL 1424


>gi|258511408|ref|YP_003184842.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            subsp. acidocaldarius DSM 446]
 gi|257478134|gb|ACV58453.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            subsp. acidocaldarius DSM 446]
          Length = 1440

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 208/923 (22%), Positives = 331/923 (35%), Gaps = 242/923 (26%)

Query: 100  VLLVSTAEGYQRLIELVS---RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
             +LV   EG + L  LVS     YL     +  RI  S L     EGL++ T    G + 
Sbjct: 619  TVLVRNREGLRNLYRLVSIAHTQYL----HRVPRIPKSALAR-HREGLLIGTACRQGELV 673

Query: 157  RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHEL------ 209
             AFF   S+     LL F        Y+ +Q    Y+   RE  V       EL      
Sbjct: 674  EAFFRGKSEDEIDTLLEFYD------YLEIQPVSHYEPLVREGVVASFEQVRELLRNIVE 727

Query: 210  -------PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
                   P+VAT +  +L E D    ++ +        SQK   +  P H+ +   EM+ 
Sbjct: 728  IGKRLNKPVVATGDVHYLDEHDAIFREIFLQ-------SQKLDTKQPPLHF-RTTDEMLE 779

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE-- 320
             F+ L E    TV I               PR +   CDD+ K   +EL    + G E  
Sbjct: 780  EFAFLGEEDARTVVIDN-------------PRRLAALCDDV-KPIPDELHTPVIEGAEDE 825

Query: 321  -VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
              RLA     + Y     +   +RL+ ELN I    ++  +LI    +  +  +   VG 
Sbjct: 826  IRRLAYDKAKRIYGDPLPELVEKRLERELNAIISHGYAVIYLIAHKLVTKSLSDGYLVG- 884

Query: 377  GRGSGAGSVTAYALTITDIDPL----------------------RFSL------------ 402
             RGS   S+ A    IT+++PL                       F L            
Sbjct: 885  SRGSVGSSLVATMTDITEVNPLPPHYVCLSCHYHEFFLRGEYGSGFDLPDKACPNCGAKL 944

Query: 403  -------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                    FE F+  D   +PD D++F  + +    RY +  +G + V +  T   +  K
Sbjct: 945  HKDGQDIPFETFMGFDGDKVPDIDLNFSGEYQPRAHRYTEELFGKDHVFRAGTISVVAEK 1004

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR---LADPSVDRLL 512
             A           Y  V                        +F E R   L +  ++RL+
Sbjct: 1005 TA-----------YGYV-----------------------RKFAEERGLVLRNAEIERLV 1030

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY---------RDVRSDLPVTQFNMKWI 563
               +   G+ R    H  G V+    +   V +Y          D  S+   T F+    
Sbjct: 1031 ---RGCTGVKRTTGQHPGGQVV----VPHYVEIYDFTPIQYPADDTSSETLTTHFDYHSG 1083

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL----------- 612
             +  L+K D LG    T+++   D        VD   IP DD +   L            
Sbjct: 1084 LENCLLKLDILGHDDPTVIRMLQDLTG-----VDPKSIPLDDPDVLELFRSTRPLGVTPE 1138

Query: 613  ---TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
               +T GT  I +  +  +RQ LE  +P    +++ +  L         V  NN +    
Sbjct: 1139 EIRSTTGTYAIPEFGTRFVRQMLEDTRPTTFSELVRISGLSH----GTDVWLNNAQT--- 1191

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA----DVLRRAMGKKIKEEM 725
                   LI   +     VI  ++ +M +  +  G   + A    + +R+  G K ++E 
Sbjct: 1192 -------LIREQIATLSEVICARDDIM-LYLIQKGLDPARAFKIMEGIRKGKGVKPEDEA 1243

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              ++        ++G              K   Y F K+HAAAY +++ + AW K H P+
Sbjct: 1244 YMREHGVPDWYIESG--------------KKIKYMFPKAHAAAYVLMAVRIAWFKVHRPL 1289

Query: 786  EFLAASMTLEMDNVEK----------IKKFCQDARQFN---------IQIMPPSVNTPCV 826
             F A   T+  D+ +           +KK  +   + N         + ++  ++     
Sbjct: 1290 AFYATYFTVRADDFDVAVMTAGREAILKKIDEIEAKGNAASAKEKSFLTVLEVALEMVAR 1349

Query: 827  DFKVGDNRIYYS-----------------LAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
             ++     +Y S                  AAI G+G T AR++ EA+    F SLED  
Sbjct: 1350 GYRFLPIDLYKSHATQFLIEEEARGLRPPFAAIPGIGETAARNLYEAAQQGEFLSLEDLQ 1409

Query: 870  SRVDSKKLNRRVLESLVFAGALD 892
            SR    + +R V++ L+  G LD
Sbjct: 1410 SRA---RASRAVIDVLMELGCLD 1429


>gi|257887081|ref|ZP_05666734.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
 gi|257895646|ref|ZP_05675299.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|293377743|ref|ZP_06623932.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium PC4.1]
 gi|257823135|gb|EEV50067.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
 gi|257832211|gb|EEV58632.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|292643743|gb|EFF61864.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium PC4.1]
          Length = 1450

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 164/807 (20%), Positives = 299/807 (37%), Gaps = 210/807 (26%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V++  + +  +VAT N  +L+EED     +L+   +S   +        PD + +   E
Sbjct: 724  LVEIGKSLDKIVVATGNVHYLNEEDAIYRKILI---NSMGGANPLNRHSLPDVHFRTTDE 780

Query: 260  MVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            M++ F  L E       ++NT +IA  C  ++ V                    ++EL  
Sbjct: 781  MLTAFHFLGEETAKEIVVDNTNKIADICEEVIPV--------------------KDELYT 820

Query: 314  KAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              + G E  +++ +  K          +  ++RL+ ELN I    FS  +LI    +  +
Sbjct: 821  PKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSINGNGFSVIYLIAQKLVHKS 880

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
             ++   VG  RGS   S  A    IT+++PL                             
Sbjct: 881  NEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEK 939

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D + E   Y +  +G + V + 
Sbjct: 940  QCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRA 999

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V       Y + + L                     +FR A     
Sbjct: 1000 GTIGTVADKTAYGYV-----KGYERDNNL---------------------QFRSAE---- 1029

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----------- 555
             VDRL   ++   G+ R    H  GI++        +P Y DV    P+           
Sbjct: 1030 -VDRL---AKGATGVKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQNSEW 1077

Query: 556  --TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL- 612
              T F+   I    ++K D LG    T+++   D        +D   IP DD E   +  
Sbjct: 1078 KTTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDLSG-----IDPQTIPTDDPEVMRIFA 1131

Query: 613  -------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
                         +  GTLGI +  +  +R  LE   P    +++ +  L     +    
Sbjct: 1132 GPEVLGVTQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDV---- 1187

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                  N +E I      +  ++     +++Y    +  A L SG +    + +R+    
Sbjct: 1188 ---WLGNAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWN 1240

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KI +E+   +E ++S   +N +      +  ++      Y F K+HAAAY +++ + A+ 
Sbjct: 1241 KIPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYF 1292

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFC-------QDARQFNIQIMPPSV----------- 821
            K ++P+ +  A  ++  D+ + +   C       Q  ++   + +  SV           
Sbjct: 1293 KVYFPILYYCAYFSVRADDFDLV-SMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLEL 1351

Query: 822  -----------------NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
                              +  V+F +  + +     A+  +GT  A+ I+EA  D PF S
Sbjct: 1352 ANEMLERGFKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLS 1411

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGAL 891
             ED  +R    K+++ ++E +   G L
Sbjct: 1412 KEDLATR---GKVSKTLIEYMNDNGVL 1435


>gi|282916524|ref|ZP_06324282.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus D139]
 gi|283770328|ref|ZP_06343220.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            H19]
 gi|282319011|gb|EFB49363.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus D139]
 gi|283460475|gb|EFC07565.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            H19]
          Length = 1438

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 204/936 (21%), Positives = 355/936 (37%), Gaps = 234/936 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYR 196
            EGL++ T    G +  A         EK  +   F ++    LY +L   +  R  +   
Sbjct: 655  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDLIDRELIRDTETLH 714

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            E   +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 715  EIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLPE 767

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR          
Sbjct: 768  AHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM--------- 818

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             E  NE         E+R    A A+  + +D  Q    RL+ EL  I    F+  +LI 
Sbjct: 819  -EGANE---------EIRELSYANARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLIS 868

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 869  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGS 927

Query: 399  RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE FL      +PD D++F  + +     Y +  +G
Sbjct: 928  GFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 987

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND       Q I       
Sbjct: 988  EDKVFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI------- 1018

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
              R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+    
Sbjct: 1019 HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPA 1065

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1119

Query: 607  ETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E   + +T               GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +          N +E       LI   + +   VI  ++ +M +  + +G        
Sbjct: 1180 TDV-------WLGNAQE-------LIKTGICDLSSVIGCRDDIM-VYLMYAG-------- 1216

Query: 713  LRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            L  +M  KI E + K K   E  I    +N +      +  ++      Y F K+HAAAY
Sbjct: 1217 LEASMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAY 1271

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--ARQFNI---- 814
             +++ + A+ K H+P+ + A+  T+   + +          I+   +D  +R  ++    
Sbjct: 1272 VLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKE 1331

Query: 815  ------------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                              ++ P S+  +   +F +  + +     ++ G+G   A+ I+E
Sbjct: 1332 KDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVE 1391

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  D PF S ED   +     L+++++E L   G+L
Sbjct: 1392 ARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSL 1424


>gi|293570615|ref|ZP_06681666.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E980]
 gi|291609286|gb|EFF38557.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E980]
          Length = 1450

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 164/807 (20%), Positives = 299/807 (37%), Gaps = 210/807 (26%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V++  + +  +VAT N  +L+EED     +L+   +S   +        PD + +   E
Sbjct: 724  LVEIGKSLDKIVVATGNVHYLNEEDAIYRKILI---NSMGGANPLNRHSLPDVHFRTTDE 780

Query: 260  MVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            M++ F  L E       ++NT +IA  C  ++ V                    ++EL  
Sbjct: 781  MLTAFHFLGEETAKEIVVDNTNKIADICEEVIPV--------------------KDELYT 820

Query: 314  KAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              + G E  +++ +  K          +  ++RL+ ELN I    FS  +LI    +  +
Sbjct: 821  PKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSINGNGFSVIYLIAQKLVHKS 880

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
             ++   VG  RGS   S  A    IT+++PL                             
Sbjct: 881  NEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEK 939

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D + E   Y +  +G + V + 
Sbjct: 940  QCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRA 999

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V       Y + + L                     +FR A     
Sbjct: 1000 GTIGTVADKTAYGYV-----KGYERDNNL---------------------QFRSAE---- 1029

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----------- 555
             VDRL   ++   G+ R    H  GI++        +P Y DV    P+           
Sbjct: 1030 -VDRL---AKGATGVKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQNSEW 1077

Query: 556  --TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL- 612
              T F+   I    ++K D LG    T+++   D        +D   IP DD E   +  
Sbjct: 1078 KTTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDLSG-----IDPQTIPTDDPEVMRIFA 1131

Query: 613  -------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
                         +  GTLGI +  +  +R  LE   P    +++ +  L     +    
Sbjct: 1132 GPEVLGVTQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDV---- 1187

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                  N +E I      +  ++     +++Y    +  A L SG +    + +R+    
Sbjct: 1188 ---WLGNAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWN 1240

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KI +E+   +E ++S   +N +      +  ++      Y F K+HAAAY +++ + A+ 
Sbjct: 1241 KIPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYF 1292

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFC-------QDARQFNIQIMPPSV----------- 821
            K ++P+ +  A  ++  D+ + +   C       Q  ++   + +  SV           
Sbjct: 1293 KVYFPILYYCAYFSVRADDFDLV-SMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLEL 1351

Query: 822  -----------------NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
                              +  V+F +  + +     A+  +GT  A+ I+EA  D PF S
Sbjct: 1352 ANEMLERGFKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLS 1411

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGAL 891
             ED  +R    K+++ ++E +   G L
Sbjct: 1412 KEDLATR---GKVSKTLIEYMNDNGVL 1435


>gi|160902928|ref|YP_001568509.1| DNA polymerase III PolC [Petrotoga mobilis SJ95]
 gi|160360572|gb|ABX32186.1| DNA polymerase III, alpha subunit [Petrotoga mobilis SJ95]
          Length = 1388

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 164/787 (20%), Positives = 289/787 (36%), Gaps = 209/787 (26%)

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS----IF 264
            +P+V  +N+ +L +ED   ++ L        V +K R   +   YL+   EM+     IF
Sbjct: 684  MPVVMVSNAHYLDKEDQIFYNALK-------VGEK-RKTSSAHRYLRTTDEMIEEAQRIF 735

Query: 265  SDLPEA----LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
             D   A    + NT EIA +   I                    K   N+L    +   E
Sbjct: 736  GDKEIAEKIVITNTNEIADQIEII--------------------KPLSNKLHPPKIENAE 775

Query: 321  VRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
            V + + A  K Y        +    RL+ EL  I +  ++  +LI    +Q + ++   V
Sbjct: 776  VEIEELAKKKAYEIYGNPLPEIVESRLNRELESIVKHGYAVLYLIAQKIVQKSLEDGYLV 835

Query: 375  GPGRGSGAGSVTAYALTITDIDPL----------------------RFSLL--------- 403
            G  RGS   S+ A  L IT+I+PL                       + L+         
Sbjct: 836  G-SRGSVGSSLVATMLGITEINPLPPHYICPSCKNVEFFDKEEIGSGYDLVDKKCEKCGA 894

Query: 404  ----------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
                      FE F+  +   +PD D++F  D ++   +Y++  +G + V +  T  ++ 
Sbjct: 895  KMKKDGQDIPFETFMGFEGDKIPDIDLNFSGDYQNMAHKYIEKMFGEDHVFRAGTISTIA 954

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             + A           +    + C+            Q I  +S              ++ 
Sbjct: 955  DRTA-----------FGFAKKYCEE-----------QGIVKNSE-------------IMR 979

Query: 514  ISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGL 568
            I + + G+ R    H  G++I   +  +    P+     D +S++  T F+   I    L
Sbjct: 980  IVKAITGVKRTTGQHPGGLMIVPKEEEVYDYTPIQFPANDNKSNVQTTHFDYHVIHN-DL 1038

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL---------------T 613
            +K D LG    T ++   D        VD   IP DD +T  L                T
Sbjct: 1039 VKLDALGHDDPTFIKMMSDLTG-----VDPMTIPMDDKKTLSLFSSTKALKIDLKNELGT 1093

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
            T GTLG+ +  ++ +R  LE  +P    +++ +  L     +   +  N           
Sbjct: 1094 TVGTLGVPEFGTTFVRMMLEDTRPKSFSELVRISGLSHGTDVWAGIAKN----------- 1142

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                ID  +     VI  ++ +M        Y LS+    + A    I E++ K K    
Sbjct: 1143 ---WIDRKIATLDEVISCRDDIMN-------YLLSKGAPPKSAFS--IMEKVRKGK---- 1186

Query: 734  SGASKNGISKTIAVNI---FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             G  +  I     + +   F +  +   Y F K+HAAAY  ++++ AW K HYP+ F + 
Sbjct: 1187 -GIDEEDIELMKELKVPEWFIISCQKIKYLFPKAHAAAYVSMAFRIAWFKVHYPLAFYST 1245

Query: 791  SMTLEMDN----------------VEKIKKFCQDARQFN--------IQIMPPSVNTPCV 826
              T++ D                 + +++    D R+ N        +++M    N   V
Sbjct: 1246 YFTVKGDEFNLKVIFSGRDAIKKRIFELRNMDLDVRKKNEMVVLELALEMMLRGYNFKMV 1305

Query: 827  D--------FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
            D        F +  N +      +  +G   A +I++ S +  F S+EDF ++    + N
Sbjct: 1306 DLNKSDSKKFLIDGNSLVVPFIKVPNLGEKAAENIIK-SRESGFKSIEDFAAKSGCNRTN 1364

Query: 879  RRVLESL 885
               L  L
Sbjct: 1365 VETLREL 1371



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 36/63 (57%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S +EG L +  I+  I      A+AITD+  + S  EF +KA A GI+PI 
Sbjct: 295 VELHLHSKLSAMEGLLDVGEIVKTIKNWGHKAVAITDSGVVQSIPEFYEKAVAVGIKPIF 354

Query: 72  GCQ 74
           G Q
Sbjct: 355 GIQ 357


>gi|331090692|ref|ZP_08339541.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330400106|gb|EGG79757.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 1487

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 186/899 (20%), Positives = 337/899 (37%), Gaps = 172/899 (19%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +++L     G   L  LVS  +L   G+   RI  S L     EGLI+ +   +G + +A
Sbjct: 644  VIILAKNDVGRVNLYTLVSMSHLKYFGRMP-RIPKSELNRY-REGLIVGSACEAGELYQA 701

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE-----SQVVQLAYTH 207
               + S+    +++ F      + L  +   +  +R    +   +      ++V+L    
Sbjct: 702  ILNDKSEEQIAKIVNFYDYLEIQPLGNNAFMLESERISNVNTKEDLIQINKKIVKLGEEF 761

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
            +  +V T +  FL  +D E +  ++        +    P      YL+   EM+S FS L
Sbjct: 762  QKMVVGTCDVHFLDPDD-EVYRRIIMTGKGFSDADDQAPL-----YLRTTEEMMSEFSYL 815

Query: 268  PEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
              A    + I    R + ++   +P+ P     +C  + +  + ELR+       +   +
Sbjct: 816  GSAKAEEIVITNPNRIADMIDPISPVRP----DKCPPVIQNSDQELRD-------ICYEK 864

Query: 326  GAIAKGYHAQDYR-QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                 G +  D   +RL+ ELN I    F+  ++I    +  + ++   VG  RGS   S
Sbjct: 865  AHSMYGENLPDMVVERLERELNSIISNGFAVMYIIAQKLVWKSVEDGYLVG-SRGSVGSS 923

Query: 385  VTAYALTITDIDPLR--------------------------------------------- 399
              A    IT+++PL                                              
Sbjct: 924  FVATMAGITEVNPLSPHYYCKKCHYSDFTSDEVRAYSGLSGWDMPDKKCPVCGEPLAKDG 983

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            F + FE FL       PD D++F  D +    +Y +  +G  +  +  T G+L  K A  
Sbjct: 984  FDIPFETFLGFKGNKEPDIDLNFSGDYQSNAHKYTEVIFGTGQTFRAGTIGTLADKTAYG 1043

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V    +                            DSR R+       ++R++E      
Sbjct: 1044 FVKNYYE--------------------------ERDSRKRKCE-----IERIVE---GCT 1069

Query: 520  GLYRHASTHAAGIVI---GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDF 573
            G+ R    H  GI++   G+  ++   P+     D+ +D+  T F+   I+   L+K D 
Sbjct: 1070 GIRRSTGQHPGGIIVLPHGEN-INSFTPVQHPANDMTTDIITTHFDYHSIDH-NLLKLDI 1127

Query: 574  LGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LG    T+++   D +    G K D + IP DD +   L      LGI   +  G     
Sbjct: 1128 LGHDDPTIIRMLEDLITDITGEKFDATKIPLDDPDVMALFAGTEVLGIKPEDIGGCPVGC 1187

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIY 691
             G+     + +I +V   +P  I +++  +   +G +  + +   LI          I  
Sbjct: 1188 LGIPEFGTDFVIQMVVDTKPKTISDLIRISGLSHGTDVWLNNAQTLIQEGKATISTAICT 1247

Query: 692  QEQVMQI---AQLLSGYSLSEADVLRRAM--GKKIKEEMDKQKERFISGASKNGISKTIA 746
            ++ +M       L S  S +  + +R+ +    K KE  + +K+    G  +  I     
Sbjct: 1248 RDDIMTYLINKGLDSEKSFTIMERVRKGLVAKGKCKEWPEYKKDMLEHGVPEWYIGSCEK 1307

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA---------------- 790
            +           Y F K+HAAAY +++Y+ A+ K +YP+ + AA                
Sbjct: 1308 IK----------YMFPKAHAAAYVMMAYRIAYCKVNYPLAYYAAYFSIRASAFSYEIMCQ 1357

Query: 791  -----------------SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGD 832
                             S++ +  +V K  K  Q+      + +P  + T   D F++ D
Sbjct: 1358 GKDKLEFYLRDYKKRSDSLSKKEQDVLKDMKIVQEMYARGFEFLPLDIYTAKADKFQIID 1417

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             ++   L +I+G+G   A  +  AS D P+ S +DF  R    K    ++  L   G L
Sbjct: 1418 GKLMPPLNSIEGMGDKAAEAVELASKDGPYLSRDDFRQRTKVSKTVIDLMADLGMFGNL 1476


>gi|331001986|ref|ZP_08325506.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411782|gb|EGG91187.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 1480

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 190/905 (20%), Positives = 332/905 (36%), Gaps = 197/905 (21%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +++L     G   L +L+S  ++ D   +  RI  S L ++  EGLI+ +    G + +A
Sbjct: 648  VIILAKNDIGRINLYKLISLSHI-DYFNKRPRIPKSILAKM-REGLIIGSACEQGEVYKA 705

Query: 159  FFFNSSQVAEKRLLTFKKLF-----GDRLYVNLQRHRGYDRYRESQ-----VVQLAYTHE 208
               +++     R+++F          + +++            + Q     +V+L   +E
Sbjct: 706  LLNDATDDELNRIVSFYDYLEIQPIANNMFLIEDEQNDIHSIEDLQEINKRIVELGNVYE 765

Query: 209  LPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
             P+VAT +  FL+ ED     ++     +    +Q       P  YL+   EM+  F  L
Sbjct: 766  KPVVATCDVHFLNPEDEIYRRIIFYGKGYKDADTQ-------PPLYLRTTREMLDEFEYL 818

Query: 268  --PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
               +A E  V  +R  + +++V +P+ P     +C  + +  + +L N        +  +
Sbjct: 819  GTEKAYEVVVTNSRMIADMVEVISPVRP----DKCPPVIENSDEDLTNACYKKAYEQYGE 874

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                     +    RL  ELN I    F+  ++I    ++ + ++   VG  RGS   S 
Sbjct: 875  ------VLPKIVEDRLKKELNSIISNGFAVMYIIAKKLVEKSNEDGYLVG-SRGSVGSSF 927

Query: 386  TAYALTITDIDPL--------------------------------------------RFS 401
             AY   IT+++PL                                             F 
Sbjct: 928  AAYTSGITEVNPLPAHYYCDCKYVDFDSPEVKAFAGMAGCDMPDKICPKCGRKLKKDGFD 987

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL       PD D++F  + +     Y +  +G     +  T G+L  K A   V
Sbjct: 988  IPFETFLGFKGDKEPDIDLNFSGEYQPNAHEYTEVIFGKGYTYRAGTVGTLANKTAYGYV 1047

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
                    ++  R C+                              ++RL   +   EG+
Sbjct: 1048 KHYFD-DKNESKRKCE------------------------------INRL---AVGCEGV 1073

Query: 522  YRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             R    H  GI++      +    P+ R   D+ +    T F+   I+   L+K D LG 
Sbjct: 1074 RRTTGQHPGGIIVLPHGEEIYTFTPVQRPANDMTTKTITTHFDYHAIDH-NLLKLDILGH 1132

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK---------------GTLGIF 621
            +  T+++   D      VK     IP D  ET  L                   G LG+ 
Sbjct: 1133 QDPTMIRMLQDLTGIDPVKD----IPLDSKETMSLFQNTSALGIEPKDILDCPLGALGVP 1188

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            +  +    Q L   +P  + D++ +  L     +          N +  I+     I   
Sbjct: 1189 EFGTDFAMQMLIDTKPQGLSDLVRIAGLAHGTDV-------WLGNAQTLILEGKATIRTA 1241

Query: 682  LKETQGVIIYQEQVMQIAQLLS-GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +     ++IY      I Q L  G S    + +R+  GK + EE +K  E       + G
Sbjct: 1242 ICTRDDIMIY-----LIEQGLDEGESFKIMESVRK--GKGLTEEWEKHME-------EKG 1287

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            +      + +    K   Y F K+HAAAY +++++ A+ K  YP+ +  A  T+      
Sbjct: 1288 VP-----DWYIWSCKKIKYMFPKAHAAAYVMMAWRIAYCKIFYPLAYYTAYFTIRATGFN 1342

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTPC------------------------VD-FKVG--- 831
              +    +D  +FNI     + +T                          +D FKV    
Sbjct: 1343 YSLMCMGKDKLEFNIAQYKKNPDTTAKYADTLRDMRIAQEMYARGFEFAKIDLFKVHPTK 1402

Query: 832  -----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                 D +I  SL++I+G+G T A  I+ A+   PF S +DF SR    K    +L+SL 
Sbjct: 1403 FQIMEDGKIMPSLSSIEGLGETAASSIVNATKAGPFISKDDFMSRAKVGKSTCELLDSLN 1462

Query: 887  FAGAL 891
              G L
Sbjct: 1463 LLGDL 1467


>gi|302332870|gb|ADL23063.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus JKD6159]
          Length = 1438

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 204/936 (21%), Positives = 355/936 (37%), Gaps = 234/936 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYR 196
            EGL++ T    G +  A         EK  +   F ++    LY +L   +  R  +   
Sbjct: 655  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDLIDRELIRDTETLH 714

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            E   +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 715  EIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLPE 767

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR          
Sbjct: 768  AHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM--------- 818

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             E  NE         E+R    A A+  + +D  Q    RL+ EL  I    F+  +LI 
Sbjct: 819  -EGANE---------EIRELSYANARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLIS 868

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 869  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGS 927

Query: 399  RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE FL      +PD D++F  + +     Y +  +G
Sbjct: 928  GFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 987

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND       Q I       
Sbjct: 988  EDKVFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI------- 1018

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
              R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+    
Sbjct: 1019 HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPA 1065

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1119

Query: 607  ETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E   + +T               GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +          N +E       LI   + +   VI  ++ +M +  + +G        
Sbjct: 1180 TDV-------WLGNAQE-------LIKTGICDLSSVIGCRDDIM-VYLMYAG-------- 1216

Query: 713  LRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            L  +M  KI E + K K   E  I    +N +      +  ++      Y F K+HAAAY
Sbjct: 1217 LEPSMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAY 1271

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--ARQFNI---- 814
             +++ + A+ K H+P+ + A+  T+   + +          I+   +D  +R  ++    
Sbjct: 1272 VLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKE 1331

Query: 815  ------------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                              ++ P S+  +   +F +  + +     ++ G+G   A+ I+E
Sbjct: 1332 KDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVE 1391

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  D PF S ED   +     L+++++E L   G+L
Sbjct: 1392 ARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSL 1424


>gi|15643342|ref|NP_228386.1| DNA polymerase III PolC [Thermotoga maritima MSB8]
 gi|6225287|sp|Q9ZHF6|DPO3_THEMA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|4981093|gb|AAD35661.1|AE001732_6 DNA polymerase III, alpha subunit [Thermotoga maritima MSB8]
 gi|3930535|gb|AAC80438.1| DNA polymerase III [Thermotoga maritima]
          Length = 1367

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 194/890 (21%), Positives = 345/890 (38%), Gaps = 180/890 (20%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            +LV   +G + L +LVS  Y+        RI  S L E   EGL++ +   SG + RA  
Sbjct: 550  ILVQNKKGLKNLYKLVSDSYI-KYFYGVPRILKSELIE-NREGLLVGSACISGELGRAAL 607

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYV-----------NLQRHRGYDRYRESQVVQLAYTHEL 209
              +S    + +  F     D + V           +L R R  + YR  ++ ++A     
Sbjct: 608  EGASDSELEEIAKFY----DYIEVMPLDVIAEDEEDLDRERLKEVYR--KLYRIAKKLNK 661

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM----VSIFS 265
             +V T +  FL  ED      L+A   +     +      P  YL+   EM    + IF 
Sbjct: 662  FVVMTGDVHFLDPEDARGRAALLAPQGNRNFENQ------PALYLRTTEEMLEKAIEIFE 715

Query: 266  DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
            D   A E  +E   R + +++   P+     EK+      E  +E+    V  L ++ A 
Sbjct: 716  DEEIAREVVIENPNRIADMIEEVQPL-----EKKLHPPIIENADEI----VRNLTMKRAY 766

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
              I      +  ++R++ ELN I    ++  +LI  + +Q +  +   VG  RGS   S+
Sbjct: 767  -EIYGDPLPEIVQKRVEKELNAIINHGYAVLYLIAQELVQKSMSDGYVVG-SRGSVGSSL 824

Query: 386  TAYALTITDIDPL------------------RFS-----------------------LLF 404
             A  L IT+++PL                  R+                        + F
Sbjct: 825  VANLLGITEVNPLPPHYRCPECKYFEVVEDDRYGAGYDLPNKNCPRCGAPLRKDGHGIPF 884

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E F+  +   +PD D++F  + ++   R+V+  +G + V +  T  ++  ++A+  V R+
Sbjct: 885  ETFMGFEGDKVPDIDLNFSGEYQERAHRFVEELFGKDHVYRAGTINTIAERSAVGYV-RS 943

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
             +    +                         + R+A +     +RL+ +   + G+ R 
Sbjct: 944  YEEKTGK-------------------------KLRKAEM-----ERLVSM---ITGVKRT 970

Query: 525  ASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  G++I   D+ +    P+     D  + +  T F  + I    L+K D LG    
Sbjct: 971  TGQHPGGLMIIPKDKEVYDFTPIQYPANDRNAGVFTTHFAYETIHD-DLVKIDALGHDDP 1029

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI--FQLESSGMRQALEGMQP 637
            T ++   D        +D   IP DD +T  + ++   LG+   +LES        G+  
Sbjct: 1030 TFIKMLKDLTG-----IDPMTIPMDDPDTLAIFSSVKPLGVDPVELESD---VGTYGIPE 1081

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVM 696
               E +  ++   RP     +V  +   +G +  ++     I+    +   VI  ++ +M
Sbjct: 1082 FGTEFVRGMLVETRPKSFAELVRISGLSHGTDVWLNNARDWINLGYAKLSEVISCRDDIM 1141

Query: 697  QIAQLLSGYSLSEADVLRRAM--GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
                +  G   S A  +   +  GK I EEM+ +  R                  F    
Sbjct: 1142 NFL-IHKGMEPSLAFKIMENVRKGKGITEEMESEMRRLK------------VPEWFIESC 1188

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKF 805
            K   Y F K+HA AY  ++++ A+ K HYP++F AA  T++ D           E IK+ 
Sbjct: 1189 KRIKYLFPKAHAVAYVSMAFRIAYFKVHYPLQFYAAYFTIKGDQFDPVLVLRGKEAIKRR 1248

Query: 806  --------CQDARQFN---------------IQIMPPSV-NTPCVDFKVGDNRIYYSLAA 841
                     +DA++ N                  +PP +  +    F +  N +      
Sbjct: 1249 LRELKAMPAKDAQKKNEVSVLEVALEMILRGFSFLPPDIFKSDAKKFLIEGNSLRIPFNK 1308

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + G+G + A  I+ A  +KPF S+ED   R    K +  +++SL   G L
Sbjct: 1309 LPGLGDSVAESIIRAREEKPFTSVEDLMKRTKVNKNHIELMKSLGVLGDL 1358


>gi|253731883|ref|ZP_04866048.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
            USA300_TCH959]
 gi|253724293|gb|EES93022.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
            USA300_TCH959]
 gi|320144365|gb|EFW36131.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus MRSA177]
          Length = 1442

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 202/936 (21%), Positives = 353/936 (37%), Gaps = 234/936 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 601  NKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYR 196
            EGL++ T    G +  A         EK  +   F ++    LY +L   +  R  +   
Sbjct: 659  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDLIDRELIRDTETLH 718

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP---RVTPD 251
            E   +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P      P+
Sbjct: 719  EIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLPE 771

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR          
Sbjct: 772  AHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM--------- 822

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             E  NE         E+R    A A+  + +D  Q    RL+ EL  I    F+  +LI 
Sbjct: 823  -EGANE---------EIRELSYANARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLIS 872

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 873  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGS 931

Query: 399  RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE FL      +PD D++F  + +     Y +  +G
Sbjct: 932  GFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 991

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND       Q I       
Sbjct: 992  EDKVFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI------- 1022

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
              R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+    
Sbjct: 1023 HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPA 1069

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1070 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1123

Query: 607  ETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E   + +T               GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1124 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1183

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +          N +E       LI   + +   VI  ++ +M +  + +G        
Sbjct: 1184 TDV-------WLGNAQE-------LIKTGICDLSSVIGCRDDIM-VYLMYAG-------- 1220

Query: 713  LRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            L  +M  KI E + K K   E  I    +N +      +  ++      Y F K+HAAAY
Sbjct: 1221 LEPSMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAY 1275

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--ARQFNI---- 814
             +++ + A+ K H+P+ + A+  T+   + +          I+   +D  +R  ++    
Sbjct: 1276 VLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKE 1335

Query: 815  ------------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                              ++ P S+  +   +F +  + +     ++ G+G   A+ I+E
Sbjct: 1336 KDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVE 1395

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  D PF S ED   +     L+++++E L   G+L
Sbjct: 1396 ARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSL 1428


>gi|320140919|gb|EFW32766.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus MRSA131]
          Length = 1436

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 204/936 (21%), Positives = 355/936 (37%), Gaps = 234/936 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 595  NKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 652

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYR 196
            EGL++ T    G +  A         EK  +   F ++    LY +L   +  R  +   
Sbjct: 653  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDLIDRELIRDTETLH 712

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            E   +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 713  EIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLPE 765

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR          
Sbjct: 766  AHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM--------- 816

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             E  NE         E+R    A A+  + +D  Q    RL+ EL  I    F+  +LI 
Sbjct: 817  -EGANE---------EIRELSYANARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLIS 866

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 867  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGS 925

Query: 399  RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE FL      +PD D++F  + +     Y +  +G
Sbjct: 926  GFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 985

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND       Q I       
Sbjct: 986  EDKVFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI------- 1016

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
              R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+    
Sbjct: 1017 HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPA 1063

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1064 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1117

Query: 607  ETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E   + +T               GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1118 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1177

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +          N +E       LI   + +   VI  ++ +M +  + +G        
Sbjct: 1178 TDV-------WLGNAQE-------LIKTGICDLSSVIGCRDDIM-VYLMYAG-------- 1214

Query: 713  LRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            L  +M  KI E + K K   E  I    +N +      +  ++      Y F K+HAAAY
Sbjct: 1215 LEPSMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAY 1269

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--ARQFNI---- 814
             +++ + A+ K H+P+ + A+  T+   + +          I+   +D  +R  ++    
Sbjct: 1270 VLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKE 1329

Query: 815  ------------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                              ++ P S+  +   +F +  + +     ++ G+G   A+ I+E
Sbjct: 1330 KDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVE 1389

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  D PF S ED   +     L+++++E L   G+L
Sbjct: 1390 ARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSL 1422


>gi|298694556|gb|ADI97778.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus ED133]
          Length = 1436

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 204/936 (21%), Positives = 355/936 (37%), Gaps = 234/936 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 595  NKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 652

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYR 196
            EGL++ T    G +  A         EK  +   F ++    LY +L   +  R  +   
Sbjct: 653  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDLIDRELIRDTETLH 712

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            E   +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 713  EIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLPE 765

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR          
Sbjct: 766  AHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM--------- 816

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             E  NE         E+R    A A+  + +D  Q    RL+ EL  I    F+  +LI 
Sbjct: 817  -EGANE---------EIRELSYANARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLIS 866

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 867  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGS 925

Query: 399  RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE FL      +PD D++F  + +     Y +  +G
Sbjct: 926  GFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 985

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND       Q I       
Sbjct: 986  EDKVFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI------- 1016

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
              R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+    
Sbjct: 1017 HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPA 1063

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1064 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1117

Query: 607  ETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E   + +T               GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1118 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1177

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +          N +E       LI   + +   VI  ++ +M +  + +G        
Sbjct: 1178 TDV-------WLGNAQE-------LIKTGICDLSSVIGCRDDIM-VYLMYAG-------- 1214

Query: 713  LRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            L  +M  KI E + K K   E  I    +N +      +  ++      Y F K+HAAAY
Sbjct: 1215 LEPSMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAY 1269

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--ARQFNI---- 814
             +++ + A+ K H+P+ + A+  T+   + +          I+   +D  +R  ++    
Sbjct: 1270 VLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKE 1329

Query: 815  ------------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                              ++ P S+  +   +F +  + +     ++ G+G   A+ I+E
Sbjct: 1330 KDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVE 1389

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  D PF S ED   +     L+++++E L   G+L
Sbjct: 1390 ARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSL 1422


>gi|323443912|gb|EGB01523.1| DNA polymerase III PolC [Staphylococcus aureus O46]
          Length = 1436

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 204/936 (21%), Positives = 352/936 (37%), Gaps = 234/936 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 595  NKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 652

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYR 196
            EGL++ T    G +  A         EK  +   F ++    LY +L   +  R  +   
Sbjct: 653  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDLIDRELIRDTETLH 712

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            E   +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 713  EIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLPE 765

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR          
Sbjct: 766  AHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM--------- 816

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             E  NE         E+R    A A+  + +D  Q    RL+ EL  I    F+  +LI 
Sbjct: 817  -EGANE---------EIRELSYANARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLIS 866

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 867  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGS 925

Query: 399  RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE FL      +PD D++F  + +     Y +  +G
Sbjct: 926  GFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 985

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND       Q I       
Sbjct: 986  EDKVFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI------- 1016

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
              R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+    
Sbjct: 1017 HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPA 1063

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1064 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1117

Query: 607  ETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E   + +T               GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1118 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1177

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +          N +E       LI   + +   VI  ++ +M +  + +G        
Sbjct: 1178 TDV-------WLGNAQE-------LIKTGICDLSSVIGCRDDIM-VYLMYAG-------- 1214

Query: 713  LRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            L  +M  KI E + K K   E  I    +N +      +  ++      Y F K+HAAAY
Sbjct: 1215 LEPSMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAY 1269

Query: 770  AVISYQTAWMKTHYPVEFLAASMTL---EMDNVEKIK----------------------- 803
             +++ + A+ K H+P+ + A+  T+   + D +  IK                       
Sbjct: 1270 VLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKEMYSRYMDLGKKE 1329

Query: 804  -------KFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                   +   +      ++ P S+  +   +F +  + +     ++ G+G   A+ I+E
Sbjct: 1330 KDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVE 1389

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  D PF S ED   +     L+++++E L   G+L
Sbjct: 1390 ARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSL 1422


>gi|258423895|ref|ZP_05686780.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A9635]
 gi|257845924|gb|EEV69953.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A9635]
          Length = 1438

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 202/936 (21%), Positives = 354/936 (37%), Gaps = 234/936 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYR 196
            EGL++ T    G +  A         EK  +   F ++    LY +L   +  R  +   
Sbjct: 655  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDLIDRELIRDTETLH 714

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            E   +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 715  EIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLPE 767

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR          
Sbjct: 768  AHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM--------- 818

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             E  NE         E+R    A A+  + +D  Q    RL+ EL  I    F+  +LI 
Sbjct: 819  -EGANE---------EIRELSYANARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLIS 868

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 869  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGS 927

Query: 399  RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE FL      +PD D++F  + +     Y +  +G
Sbjct: 928  GFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 987

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND       Q I       
Sbjct: 988  EDKVFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI------- 1018

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
              R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+    
Sbjct: 1019 HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPA 1065

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1119

Query: 607  ETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E   + +T               GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +               + +   LI   + +   VI  ++ +M +  + +G        
Sbjct: 1180 TDV--------------WLGNAQELIKTGICDLSSVIGCRDDIM-VYLMYAG-------- 1216

Query: 713  LRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            L  +M  KI E + K K   E  I    +N +      +  ++      Y F K+HAAAY
Sbjct: 1217 LEPSMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAY 1271

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--ARQFNI---- 814
             +++ + A+ K H+P+ + A+  T+   + +          I+   +D  +R  ++    
Sbjct: 1272 VLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKE 1331

Query: 815  ------------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                              ++ P S+  +   +F +  + +     ++ G+G   A+ I+E
Sbjct: 1332 KDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVE 1391

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  D PF S ED   +     L+++++E L   G+L
Sbjct: 1392 ARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSL 1424


>gi|57651834|ref|YP_186140.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus COL]
 gi|87161645|ref|YP_493854.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
            USA300_FPR3757]
 gi|88194974|ref|YP_499774.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus NCTC
            8325]
 gi|161509430|ref|YP_001575089.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
            USA300_TCH1516]
 gi|294848260|ref|ZP_06789007.1| DNA polymerase III [Staphylococcus aureus A9754]
 gi|56749834|sp|P68852|DPO3_STAAW RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|110808208|sp|Q2G1Z8|DPO3_STAA8 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|123486180|sp|Q2FHH4|DPO3_STAA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|12082347|dbj|BAB20885.1| PolC [Staphylococcus aureus]
 gi|57286020|gb|AAW38114.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus COL]
 gi|87127619|gb|ABD22133.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus USA300_FPR3757]
 gi|87202532|gb|ABD30342.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus NCTC 8325]
 gi|160368239|gb|ABX29210.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus USA300_TCH1516]
 gi|294825060|gb|EFG41482.1| DNA polymerase III [Staphylococcus aureus A9754]
          Length = 1436

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 204/936 (21%), Positives = 355/936 (37%), Gaps = 234/936 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 595  NKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 652

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYR 196
            EGL++ T    G +  A         EK  +   F ++    LY +L   +  R  +   
Sbjct: 653  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDLIDRELIRDTETLH 712

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            E   +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 713  EIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLPE 765

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR          
Sbjct: 766  AHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM--------- 816

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             E  NE         E+R    A A+  + +D  Q    RL+ EL  I    F+  +LI 
Sbjct: 817  -EGANE---------EIRELSYANARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLIS 866

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 867  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGS 925

Query: 399  RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE FL      +PD D++F  + +     Y +  +G
Sbjct: 926  GFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 985

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND       Q I       
Sbjct: 986  EDKVFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI------- 1016

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
              R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+    
Sbjct: 1017 HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPA 1063

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1064 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1117

Query: 607  ETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E   + +T               GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1118 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1177

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +          N +E       LI   + +   VI  ++ +M +  + +G        
Sbjct: 1178 TDV-------WLGNAQE-------LIKTGICDLSSVIGCRDDIM-VYLMYAG-------- 1214

Query: 713  LRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            L  +M  KI E + K K   E  I    +N +      +  ++      Y F K+HAAAY
Sbjct: 1215 LEPSMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAY 1269

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--ARQFNI---- 814
             +++ + A+ K H+P+ + A+  T+   + +          I+   +D  +R  ++    
Sbjct: 1270 VLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKE 1329

Query: 815  ------------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                              ++ P S+  +   +F +  + +     ++ G+G   A+ I+E
Sbjct: 1330 KDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVE 1389

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  D PF S ED   +     L+++++E L   G+L
Sbjct: 1390 ARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSL 1422


>gi|21282876|ref|NP_645964.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MW2]
 gi|49486103|ref|YP_043324.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MSSA476]
 gi|151221386|ref|YP_001332208.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
            Newman]
 gi|221142498|ref|ZP_03566991.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
            JKD6009]
 gi|258452563|ref|ZP_05700569.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A5948]
 gi|262048156|ref|ZP_06021043.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus D30]
 gi|262051326|ref|ZP_06023549.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
            930918-3]
 gi|282920508|ref|ZP_06328229.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A9765]
 gi|284024257|ref|ZP_06378655.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus 132]
 gi|297208090|ref|ZP_06924521.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
            51811]
 gi|300912171|ref|ZP_07129614.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381172|ref|ZP_07363825.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
            BAA-39]
 gi|56748669|sp|Q6G9U9|DPO3_STAAS RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|73919251|sp|Q5HGG7|DPO3_STAAC RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|172049022|sp|A6QGG4|DPO3_STAAE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|21204315|dbj|BAB95012.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
            subsp. aureus MW2]
 gi|49244546|emb|CAG42975.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
            MSSA476]
 gi|150374186|dbj|BAF67446.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
            subsp. aureus str. Newman]
 gi|257859781|gb|EEV82623.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A5948]
 gi|259160701|gb|EEW45722.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
            930918-3]
 gi|259163722|gb|EEW48277.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus D30]
 gi|282594170|gb|EFB99157.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A9765]
 gi|296887333|gb|EFH26235.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
            51811]
 gi|300886417|gb|EFK81619.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
 gi|302751087|gb|ADL65264.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus str. JKD6008]
 gi|304340155|gb|EFM06096.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
            BAA-39]
 gi|315198506|gb|EFU28835.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS01]
 gi|329313934|gb|AEB88347.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus T0131]
 gi|329727848|gb|EGG64299.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus 21189]
          Length = 1438

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 204/936 (21%), Positives = 355/936 (37%), Gaps = 234/936 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYR 196
            EGL++ T    G +  A         EK  +   F ++    LY +L   +  R  +   
Sbjct: 655  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDLIDRELIRDTETLH 714

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            E   +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 715  EIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLPE 767

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR          
Sbjct: 768  AHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM--------- 818

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             E  NE         E+R    A A+  + +D  Q    RL+ EL  I    F+  +LI 
Sbjct: 819  -EGANE---------EIRELSYANARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLIS 868

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 869  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGS 927

Query: 399  RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE FL      +PD D++F  + +     Y +  +G
Sbjct: 928  GFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 987

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND       Q I       
Sbjct: 988  EDKVFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI------- 1018

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
              R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+    
Sbjct: 1019 HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPA 1065

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1119

Query: 607  ETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E   + +T               GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +          N +E       LI   + +   VI  ++ +M +  + +G        
Sbjct: 1180 TDV-------WLGNAQE-------LIKTGICDLSSVIGCRDDIM-VYLMYAG-------- 1216

Query: 713  LRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            L  +M  KI E + K K   E  I    +N +      +  ++      Y F K+HAAAY
Sbjct: 1217 LEPSMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAY 1271

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--ARQFNI---- 814
             +++ + A+ K H+P+ + A+  T+   + +          I+   +D  +R  ++    
Sbjct: 1272 VLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKE 1331

Query: 815  ------------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                              ++ P S+  +   +F +  + +     ++ G+G   A+ I+E
Sbjct: 1332 KDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVE 1391

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  D PF S ED   +     L+++++E L   G+L
Sbjct: 1392 ARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSL 1424


>gi|291532877|emb|CBL05990.1| DNA polymerase III, alpha subunit [Megamonas hypermegale ART12/1]
          Length = 207

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 93/157 (59%), Gaps = 3/157 (1%)

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYDRYRESQ- 199
           EG+I L+   +G I +A   ++ + AEK +  +  +FG D  ++ +Q H+  +  + ++ 
Sbjct: 17  EGIICLSSCIAGEIPQAIIRDNMERAEKLVQEYVDIFGKDNFFLEIQNHQIPEEAKANKG 76

Query: 200 VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRS 258
           ++ LA  ++L LVATN+  ++ +ED + HDVL+ +     +  KDR +    D YLK+ +
Sbjct: 77  LISLAQKYDLKLVATNDIHYIKKEDNDFHDVLLCIQTGRTLDDKDRMKFYNDDFYLKSGA 136

Query: 259 EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
           EM+++F D PEA+ NT+EIA RC+   +     LP F
Sbjct: 137 EMLALFKDTPEAITNTLEIANRCNVSFEFGHLHLPNF 173


>gi|269940755|emb|CBI49137.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
            TW20]
          Length = 1438

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 204/936 (21%), Positives = 355/936 (37%), Gaps = 234/936 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYR 196
            EGL++ T    G +  A         EK  +   F ++    LY +L   +  R  +   
Sbjct: 655  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDLIDRELIRDTETLH 714

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            E   +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 715  EIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLPE 767

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR          
Sbjct: 768  AHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM--------- 818

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             E  NE         E+R    A A+  + +D  Q    RL+ EL  I    F+  +LI 
Sbjct: 819  -EGANE---------EIRELSYANARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLIS 868

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 869  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGS 927

Query: 399  RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE FL      +PD D++F  + +     Y +  +G
Sbjct: 928  GFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 987

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND       Q I       
Sbjct: 988  EDKVFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI------- 1018

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
              R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+    
Sbjct: 1019 HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPA 1065

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1119

Query: 607  ETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E   + +T               GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +          N +E       LI   + +   VI  ++ +M +  + +G        
Sbjct: 1180 TDV-------WLGNAQE-------LIKTGICDLSSVIGCRDDIM-VYLMYAG-------- 1216

Query: 713  LRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            L  +M  KI E + K K   E  I    +N +      +  ++      Y F K+HAAAY
Sbjct: 1217 LEPSMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAY 1271

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--ARQFNI---- 814
             +++ + A+ K H+P+ + A+  T+   + +          I+   +D  +R  ++    
Sbjct: 1272 VLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKE 1331

Query: 815  ------------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                              ++ P S+  +   +F +  + +     ++ G+G   A+ I+E
Sbjct: 1332 KDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVE 1391

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  D PF S ED   +     L+++++E L   G+L
Sbjct: 1392 ARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSL 1424


>gi|221046767|pdb|3F2B|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
            With Dna, Dgtp, Mg And Zn
 gi|221046770|pdb|3F2C|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
            With Dna, Dgtp And Mn
 gi|221046775|pdb|3F2D|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
            With Dna, Dgtp, Mn And Zn
          Length = 1041

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 212/1023 (20%), Positives = 377/1023 (36%), Gaps = 258/1023 (25%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S ++   S+  ++++      PAIA+TD   + S  E    A   G++ I 
Sbjct: 117  VELHLHTPMSQMDAVTSVTKLIEQAKKWGHPAIAVTDHAVVQSFPEAYSAAKKHGMKVIY 176

Query: 72   GCQLDIDMQDNLKMT--------NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            G + +I + D + +           G  PF     + LL     G + L +LVS  + + 
Sbjct: 177  GLEANI-VDDGVPIAYNETHRRLGSGSGPF----HVTLLAQNETGLKNLFKLVSLSH-IQ 230

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI-------------DRAFFFNSSQV---- 166
               +  RI  S L +   +GL++ +G   G +             D A F++  +V    
Sbjct: 231  YFHRVPRIPRSVLVK-HRDGLLVGSGCDKGELFDNLIQKAPEEVEDIARFYDFLEVHPPD 289

Query: 167  AEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
              K L+    +  + +  N+ R           +V L    ++P+VAT N  +L+ ED  
Sbjct: 290  VYKPLIEMDYVKDEEMIKNIIR----------SIVALGEKLDIPVVATGNVHYLNPEDKI 339

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL-PE-----ALENTVEIARR 280
               +L+   HS   +        PD Y +  +EM+  FS L PE      ++NT +IA  
Sbjct: 340  YRKILI---HSQGGANPLNRHELPDVYFRTTNEMLDCFSFLGPEKAKEIVVDNTQKIASL 396

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQ 339
               +  +   +    IE   ++I+  E +  R K + G  + +L +             +
Sbjct: 397  IGDVKPIKDELYTPRIEGADEEIR--EMSYRRAKEIYGDPLPKLVE-------------E 441

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            RL+ EL  I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL 
Sbjct: 442  RLEKELKSIIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLP 500

Query: 399  ----------------------------------------RFSLLFERFLNPDRMSMPDF 418
                                                       + FE FL      +PD 
Sbjct: 501  PHYVCPNCKHSEFFNDGSVGSGFDLPDKNCPRCGTKYKKDGHDIPFETFLGFKGDKVPDI 560

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +     Y +  +G + V +  T G++  K A   V                 
Sbjct: 561  DLNFSGEYQPRAHNYTKVLFGEDNVYRAGTIGTVADKTAYGFV----------------- 603

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                       +A A D    E R A+  +DRL   +    G+ R    H  GI++    
Sbjct: 604  -----------KAYASDHNL-ELRGAE--IDRL---AAGCTGVKRTTGQHPGGIIV---- 642

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                VP Y ++    P+             T F+   I    L+K D LG    T+++  
Sbjct: 643  ----VPDYMEIYDFTPIQYPADDTSSEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRML 697

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQA 631
             D        +D   IP DD +   + ++               GT+GI +  +  +RQ 
Sbjct: 698  QDLSG-----IDPKTIPTDDPDVMGIFSSTEPLGVTPEQIMCNVGTIGIPEFGTRFVRQM 752

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            LE  +P    +++ +  L     +          N +E I +    +  ++     +++Y
Sbjct: 753  LEETRPKTFSELVQISGLSHGTDV-------WLGNAQELIQNGTCTLSEVIGCRDDIMVY 805

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK--ERFISGASKNGISKTIAVNI 749
               + +  +    + + E+    + +  + + EM K    E +I    K           
Sbjct: 806  --LIYRGLEPSLAFKIMESVRKGKGLTPEFEAEMRKHDVPEWYIDSCKK----------- 852

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN----------- 798
                     Y F K+HAAAY +++ + A+ K H+P+ + A+  T+  ++           
Sbjct: 853  -------IKYMFPKAHAAAYVLMAVRIAYFKVHHPLLYYASYFTVRAEDFDLDAMIKGSA 905

Query: 799  -----VEKIK---------------------KFCQDARQF-NIQIMPPSVNTPCVDFKVG 831
                 +E+I                      + C+    F NI +      +   +F + 
Sbjct: 906  AIRKRIEEINAKGIQATAKEKSLLTVLEVALEMCERGFSFKNIDLY----RSQATEFVID 961

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             N +     AI G+GT  A+ I+ A  +  F S ED   R    KL++ +LE L   G L
Sbjct: 962  GNSLIPPFNAIPGLGTNVAQAIVRAREEGEFLSKEDLQQR---GKLSKTLLEYLESRGCL 1018

Query: 892  DCF 894
            D  
Sbjct: 1019 DSL 1021


>gi|297584076|ref|YP_003699856.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10]
 gi|297142533|gb|ADH99290.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10]
          Length = 1433

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 181/777 (23%), Positives = 298/777 (38%), Gaps = 154/777 (19%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKNRS 258
            +++L  T   P+VAT N  +L+EED+    +L+A    +  +++   P+V    + +  +
Sbjct: 716  LIKLGETVNKPVVATGNVHYLNEEDHVYRKILIASQGGANPLNRITLPKV----HFRTTN 771

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
            EM+  FS L E  E   EI    S           R I  E D+I K   ++L    + G
Sbjct: 772  EMLDCFSFLSE--EKRQEIVVTNS-----------RKIADEIDEI-KPIPDDLYTPHIEG 817

Query: 319  LEVRLAQGAI--AKGYHAQDY----RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             +  + Q     AK  +         +RL+ EL  I    FS  +LI    ++ +  +  
Sbjct: 818  ADEEMRQMCYDRAKSIYGDPLPELVEKRLEKELTSIISNGFSVIYLISQKLVKKSLDDGY 877

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFC 423
             VG  RGS   S  A    IT+++PL         ++S  F          +PD D + C
Sbjct: 878  LVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPSCQYSYFFNDGSVGSGFDLPDKDCEKC 936

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV--DRLCKLIPN 481
                +        K GH+   +  TF   +    + D+       Y  V  +    L   
Sbjct: 937  GTPYE--------KDGHDIPFE--TFLGFKGDK-VPDIDLNFSGEYQPVAHNYTKDLFGE 985

Query: 482  DPAHPV-SLQAIADDSRFREAR---------LADPSVDRLLEISQKLEGLYRHASTHAAG 531
            D  +   ++  +AD + +   +         L    +DRL+       G+ R    H  G
Sbjct: 986  DYVYRAGTITTVADKTAYGYVKGYEGDMGMQLKGAEIDRLV---SGCTGVKRSTGQHPGG 1042

Query: 532  IVIGDRPLS--QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            I++    L      P+     D  S+   T F+   I    L+K D LG    T+++   
Sbjct: 1043 IIVVPDHLDIYDFSPIQFPADDDGSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQ 1101

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKGTLGIFQLESSGMRQAL 632
            D        +D   IP DD E + L +                GT GI +  +  +RQ L
Sbjct: 1102 DLSG-----MDPKDIPVDDPEVFKLFSGTESLGVKEEDIMCKTGTFGIPEFGTRFVRQML 1156

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            E  +P    +++ +  L       + V  NN  +          LI     E + VI  +
Sbjct: 1157 EETKPSTFSELVQISGLSH----GSDVWLNNAAD----------LIAAGTCELKDVIGCR 1202

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNI 749
            + +M +  +  G        L  ++  KI E + K K     +I    KNG+      + 
Sbjct: 1203 DDIM-VYLIYQG--------LEHSLAFKIMEFVRKGKGLDPEWIEEMKKNGVPDWYIQSC 1253

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------- 800
             ++      Y F K+HAAAY +++ + A+ K H+P+ F AA  T+  D+ E         
Sbjct: 1254 LKI-----KYMFPKAHAAAYVLMAIRIAYFKVHHPMMFYAAYFTVRADDFELDTMIRGSA 1308

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCV-------------------------DFKVGDNRI 835
             I+K  ++     +   P   +   V                         +F+V +N +
Sbjct: 1309 TIRKRIEEIYSKGLDATPKEKSVLTVLELALEMTMRGFSFKKVDLYRSKASEFQVEENAL 1368

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
                 A+ GVGT  A  I+EA  D  F S E+   R    K+ + VLE+L   G LD
Sbjct: 1369 LPPFDALTGVGTNAALSIVEARKDGEFLSKENLRER---SKITKTVLENLDDHGCLD 1422


>gi|295427751|ref|ZP_06820383.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128109|gb|EFG57743.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 1436

 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 202/936 (21%), Positives = 353/936 (37%), Gaps = 234/936 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 595  NKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 652

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYR 196
            EGL++ T    G +  A         EK  +   F ++    LY +L   +  R  +   
Sbjct: 653  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDLIDRELIRDTETLH 712

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            E   +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 713  EIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLPE 765

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR          
Sbjct: 766  AHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM--------- 816

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             E  NE         E+R    A A+  + +D  Q    RL+ EL  I    F+  +LI 
Sbjct: 817  -EGANE---------EIRELSYANARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLIS 866

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 867  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGS 925

Query: 399  RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE FL      +PD D++F  + +     Y +  +G
Sbjct: 926  GFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 985

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND       Q I       
Sbjct: 986  EDKVFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI------- 1016

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
              R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+    
Sbjct: 1017 HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPA 1063

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1064 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1117

Query: 607  ETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E   + +T               GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1118 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1177

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +               + +   LI   + +   VI  ++ +M +  + +G        
Sbjct: 1178 TDV--------------WLGNAQELIKTGICDLSSVIGCRDDIM-VYLMYAG-------- 1214

Query: 713  LRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            L  +M  KI E + K K   E  I    +N +      +  ++      Y F K+HAAAY
Sbjct: 1215 LEPSMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAY 1269

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--ARQFNI---- 814
             +++ + A+ K H+P+ + A+  T+   + +          I+   +D  +R  ++    
Sbjct: 1270 VLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKE 1329

Query: 815  ------------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                              ++ P S+  +   +F +    +     ++ G+G   A+ I+E
Sbjct: 1330 KDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGETLIPPFISVPGLGENVAKRIVE 1389

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  D PF S ED   +     L+++++E L   G+L
Sbjct: 1390 ARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSL 1422


>gi|329733603|gb|EGG69931.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus 21193]
          Length = 1438

 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 200/936 (21%), Positives = 351/936 (37%), Gaps = 234/936 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYR 196
            EGL++ T    G +  A         EK  +   F ++    LY +L   +  R  +   
Sbjct: 655  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDLIDRELIRDTETLH 714

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP---RVTPD 251
            E   +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P      P+
Sbjct: 715  EIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLPE 767

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR          
Sbjct: 768  AHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM--------- 818

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             E  NE         E+R    A A+  + +D  Q    RL+ EL  I    F+  +LI 
Sbjct: 819  -EGANE---------EIRELSYANARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLIS 868

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 869  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGS 927

Query: 399  RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE FL      +PD D++F  + +     Y +  +G
Sbjct: 928  GFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 987

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND             +  R
Sbjct: 988  EDKVFRAGTIGTVAEKTAFGYVKGYL---------------NDQG-----------THKR 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
             A      +DRL+   +   G+ R    H  GI++        VP Y D+    P+    
Sbjct: 1022 GAE-----IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPA 1065

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1119

Query: 607  ETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E   + +T               GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +          N +E       LI   + +   VI  ++ +M +  + +G        
Sbjct: 1180 TDV-------WLGNAQE-------LIKTGICDLSSVIGCRDDIM-VYLMYAG-------- 1216

Query: 713  LRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            L  +M  KI E + K K   E  I    +N +      +  ++      Y F K+HAAAY
Sbjct: 1217 LEPSMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAY 1271

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--ARQFNI---- 814
             +++ + A+ K H+P+ + A+  T+   + +          I+   +D  +R  ++    
Sbjct: 1272 VLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKE 1331

Query: 815  ------------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                              ++ P S+  +   +F +  + +     ++ G+G   A+ I+E
Sbjct: 1332 KDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVE 1391

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  D PF S ED   +     L+++++E L   G+L
Sbjct: 1392 ARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSL 1424


>gi|148269487|ref|YP_001243947.1| DNA polymerase III PolC [Thermotoga petrophila RKU-1]
 gi|281411795|ref|YP_003345874.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
 gi|166217457|sp|A5IJJ8|DPO3_THEP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|147735031|gb|ABQ46371.1| DNA polymerase III catalytic subunit, PolC type [Thermotoga
            petrophila RKU-1]
 gi|281372898|gb|ADA66460.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
          Length = 1367

 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 192/884 (21%), Positives = 338/884 (38%), Gaps = 168/884 (19%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            +LV   +G + L +LVS  Y+        RI  S L E   EGL++ +   SG + RA  
Sbjct: 550  ILVQNKKGLKNLYKLVSDSYI-KYFYGVPRILKSALIE-NREGLLVGSACISGELGRAAL 607

Query: 161  FNSSQVAEKRLLTFKKLFGDR-LYVNLQRHRGYDRYRESQVVQLAYTHELPL----VATN 215
              +S    + +  F        L V  +     DR R  +V +  Y     L    V T 
Sbjct: 608  EGASDSELEEIAKFYDYIEVMPLDVIAEDEEDLDRERLKEVYRRLYRIAKKLNKFVVMTG 667

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS----IFSDLPEAL 271
            +  FL  ED      L+A   +     +      P  YL+   EM+     IF D   A 
Sbjct: 668  DVHFLDPEDARGRAALLAPQGNRNFENQ------PALYLRTTEEMLEKAMEIFEDEEIAR 721

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
            E  +E   R + +++   P+     EK+      E  +E+    V  L ++ A   I   
Sbjct: 722  EVVIENPNRIADMIEEVQPL-----EKKLHPPIIENADEI----VRSLTMKRAY-EIYGD 771

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
               +  ++R++ ELN I    ++  +LI  + +Q +  +   VG  RGS   S+ A  L 
Sbjct: 772  PLPEIVQKRVERELNAIINHGYAVLYLIAQELVQKSMSDGYVVG-SRGSVGSSLVANLLG 830

Query: 392  ITDIDPL------------------RFS-----------------------LLFERFLNP 410
            IT+++PL                  R+                        + FE F+  
Sbjct: 831  ITEVNPLPPHYRCPECKYFKVVEDDRYGAGYDLPDKKCPVCGAPLRKDGHDIPFETFMGF 890

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +   +PD D++F  + ++   R+V+  +G + V +  T  ++  K+A+  V R+ +    
Sbjct: 891  EGDKVPDIDLNFSGEYQERAHRFVEELFGKDHVYRAGTINTIAEKSAVGYV-RSYEEKTG 949

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            +                         + R+A +     +RL+ +   + G+ R    H  
Sbjct: 950  K-------------------------KLRKAEM-----ERLVSM---ITGVKRTTGQHPG 976

Query: 531  GIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            G++I   D+ +    P+     D  + +  T F  + I    L+K D LG    T ++  
Sbjct: 977  GLMIIPKDKEVYDFTPIQYPANDRNAGVFTTHFAYETIHD-DLVKIDALGHDDPTFIKML 1035

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI--FQLESSGMRQALEGMQPDCIEDI 643
             D        +D   IP DD +T  + ++   LG+   +LES        G+     E +
Sbjct: 1036 KDLTG-----IDPMTIPMDDPDTLAIFSSVKPLGVDPVELESD---VGTYGIPEFGTEFV 1087

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
              ++   RP     +V  +   +G +  + +    I+    +   VI  ++ +M    + 
Sbjct: 1088 RGMLVETRPKSFAELVRISGLSHGTDVWLNNARDWINLGYAKLSDVISCRDDIMNFL-IH 1146

Query: 703  SGYSLSEADVLRRAM--GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             G   S A  +   +  GK I EEM+ +            + K      F    K   Y 
Sbjct: 1147 KGMEPSLAFKIMENVRKGKGITEEMESE------------MRKLKVPEWFIESCKRIKYL 1194

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQDARQ 811
            F K+HA AY  ++++ A+ K HYP++F AA  T++ D           E IK+  ++ + 
Sbjct: 1195 FPKAHAVAYVSMAFRIAYFKVHYPLQFYAAYFTIKGDQFDPVLVLKGKEAIKRRLRELKA 1254

Query: 812  FN-----------------------IQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGT 847
                                        +PP +  +    F +  N +      + G+G 
Sbjct: 1255 MTGKDVQKKNEESVLEVVLEMILRGFSFLPPDIFKSDAKKFLIEGNSLRIPFNKLPGLGD 1314

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + A  I+ A  +KPF S+ED   R    K +  ++ SL   G+L
Sbjct: 1315 SVAESIVRAREEKPFTSVEDLMKRTKVNKNHIELMRSLGVLGSL 1358


>gi|330838937|ref|YP_004413517.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
 gi|329746701|gb|AEC00058.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
          Length = 1254

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 213/996 (21%), Positives = 364/996 (36%), Gaps = 249/996 (25%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  H+  S ++  +S   ++   A+   PAIAITD   + +  + ++ A    I+ I 
Sbjct: 352  VELHAHTRMSNMDAVVSAETLIKTAASWGWPAIAITDHGVVQAFPDAAKAASKLDIKVIY 411

Query: 72   GCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +  +  +D   K  N           I+ L     G + L ++VS  +L    +Q  R
Sbjct: 412  GMEGYLVQEDFEQKHANH----------IIFLAKNLNGLRNLYQMVSLSHLKYLHRQP-R 460

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN----- 185
            +    ++E   E +I+ +   +G + RA     +Q  E+ LL     + D L +      
Sbjct: 461  LPKHIIEEY-REDVIIGSACEAGELIRAIV---AQKPEEELLEIASFY-DYLEIQPIGNN 515

Query: 186  --LQRHRGYDRYRESQ--------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
              L R   +   ++ +        V +LA      L+AT +  FL+ ED        A+ 
Sbjct: 516  EFLVRSDKFPHIKDDEDLRRINLKVAELAKKLGKMLIATCDVHFLNPED--------AIY 567

Query: 236  HSTVVSQK--DRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPI 291
             + ++  K  +   + P  +L+   EM++ F  L E  A E  V   R+ S +++   PI
Sbjct: 568  RAILMKGKGFEDAELQPPLFLRTTEEMLAEFDYLGEEAAYEAVVTNPRKVSDMIEKFKPI 627

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGL--EVRLAQGAIAKGYHAQDYRQ----RLDFEL 345
                             +EL +  + G   E+R      A+  + ++  +    RL  EL
Sbjct: 628  ----------------PDELYSPMIPGAAEEIRDMSYRKARSLYGENLPEVVEARLKQEL 671

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------- 398
              I    FS  +LI    ++ +  +   VG  RGS   S  A    IT+++PL       
Sbjct: 672  TPIIGHGFSVLYLIAQRLVKKSNDDGYLVG-SRGSVGSSFVATMTDITEVNPLPPHWRCP 730

Query: 399  --RFS--------------------------------LLFERFLNPDRMSMPDFDIDFCQ 424
              +FS                                + F  FL  D   +PD D++F  
Sbjct: 731  HCKFSEFVEDGSVGCGYDLPSRKCPVCGTELLKDGHDIPFAVFLGFDGDKVPDIDLNFSG 790

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + +    +Y +  +G + V +  T  ++  K A   V +  +          K +    A
Sbjct: 791  EYQPVAHKYTEELFGKDNVYRAGTIATVADKTAFGYVKKFFEE---------KGVKKHNA 841

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ--L 542
            +  SL A                            G+ R    H AGI++  R +     
Sbjct: 842  YIASLAA-------------------------GCMGVKRTTGQHPAGIMVVPRNMDVHFF 876

Query: 543  VPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             P+ R   D  +    T F+   I  + L+K D LG    T++ K L+ L  R    D  
Sbjct: 877  TPIQRPADDKNTTTITTHFDYHSI-SSRLVKLDILGHDDPTVI-KMLEDLTHR----DPK 930

Query: 600  LIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             IPFDD  T  + ++               GT GI +  +   RQ ++   P C  D++ 
Sbjct: 931  TIPFDDPATLSIFSSTKALGLDPKELGANSGTFGIPEFRTGFTRQMIDDTHPSCFSDLVR 990

Query: 646  LVSLYRPGPI----DNIVVYNNRKNGKEKIVS--------IHPLIDPMLKETQGVIIYQE 693
            +        +       ++ + +   +E I +        IH  IDP+L           
Sbjct: 991  ISGFSHGTDVWLGNAQDLIRSGQCTLREAISARDDIMMYLIHSGIDPLL---------SF 1041

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            Q M+  +   G   +   +LR               E +I    K               
Sbjct: 1042 QTMESVRKGKGIKEATVKILREG----------GIPEWYIEACQK--------------- 1076

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL-----EMDNVEKIKKFCQ- 807
                 Y F ++HA AY +++++ A+ K HYP+ F AA  ++     + D V + K + + 
Sbjct: 1077 ---IKYMFPRAHATAYVMMAWRIAYCKVHYPLAFYAAYFSIRAAEFDADVVARGKDYVKK 1133

Query: 808  --DA----------RQFNIQIMPPSVNTPCVDFKVGDNRIYYS---------------LA 840
              DA           +  I ++  +       F +    IY S               LA
Sbjct: 1134 QLDALEAKEAPDIKEKATIIVLQLAWEMYLRGFFMERVDIYASEAERFVLHEKSLLPPLA 1193

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            ++ GVG + AR I+EA  D  F S+ED   R    K
Sbjct: 1194 SLGGVGASAARSIVEARKDGLFTSIEDIKKRTGVSK 1229


>gi|257425318|ref|ZP_05601743.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus 55/2053]
 gi|257427979|ref|ZP_05604377.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus 65-1322]
 gi|257430612|ref|ZP_05606994.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            68-397]
 gi|257433372|ref|ZP_05609730.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            E1410]
 gi|257436214|ref|ZP_05612261.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus M876]
 gi|282910836|ref|ZP_06318639.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus WBG10049]
 gi|282914041|ref|ZP_06321828.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
            aureus subsp. aureus M899]
 gi|282924086|ref|ZP_06331762.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus C101]
 gi|293501073|ref|ZP_06666924.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus 58-424]
 gi|293510035|ref|ZP_06668743.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus M809]
 gi|293526621|ref|ZP_06671306.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
            aureus subsp. aureus M1015]
 gi|257271775|gb|EEV03913.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus 55/2053]
 gi|257274820|gb|EEV06307.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus 65-1322]
 gi|257278740|gb|EEV09359.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            68-397]
 gi|257281465|gb|EEV11602.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            E1410]
 gi|257284496|gb|EEV14616.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus M876]
 gi|282314058|gb|EFB44450.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus C101]
 gi|282322109|gb|EFB52433.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
            aureus subsp. aureus M899]
 gi|282325441|gb|EFB55750.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus WBG10049]
 gi|290920693|gb|EFD97756.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
            aureus subsp. aureus M1015]
 gi|291096078|gb|EFE26339.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus 58-424]
 gi|291466979|gb|EFF09497.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus M809]
 gi|312438356|gb|ADQ77427.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH60]
          Length = 1438

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 202/936 (21%), Positives = 353/936 (37%), Gaps = 234/936 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYR 196
            EGL++ T    G +  A         EK  +   F ++    LY +L   +  R  +   
Sbjct: 655  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDLIDRELIRDTETLH 714

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            E   +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 715  EIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLPE 767

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR          
Sbjct: 768  AHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM--------- 818

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             E  NE         E+R    A A+  + +D  Q    RL+ EL  I    F+  +LI 
Sbjct: 819  -EGANE---------EIRELSYANARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLIS 868

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 869  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGS 927

Query: 399  RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE FL      +PD D++F  + +     Y +  +G
Sbjct: 928  GFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 987

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND       Q I       
Sbjct: 988  EDKVFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI------- 1018

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
              R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+    
Sbjct: 1019 HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPA 1065

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1119

Query: 607  ETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E   + +T               GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +               + +   LI   + +   VI  ++ +M +  + +G        
Sbjct: 1180 TDV--------------WLGNAQELIKTGICDLSSVIGCRDDIM-VYLMYAG-------- 1216

Query: 713  LRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            L  +M  KI E + K K   E  I    +N +      +  ++      Y F K+HAAAY
Sbjct: 1217 LEPSMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAY 1271

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--ARQFNI---- 814
             +++ + A+ K H+P+ + A+  T+   + +          I+   +D  +R  ++    
Sbjct: 1272 VLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKE 1331

Query: 815  ------------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                              ++ P S+  +   +F +    +     ++ G+G   A+ I+E
Sbjct: 1332 KDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGETLIPPFISVPGLGENVAKRIVE 1391

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  D PF S ED   +     L+++++E L   G+L
Sbjct: 1392 ARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSL 1424


>gi|260887309|ref|ZP_05898572.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
 gi|260862945|gb|EEX77445.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
          Length = 1255

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 213/996 (21%), Positives = 364/996 (36%), Gaps = 249/996 (25%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  H+  S ++  +S   ++   A+   PAIAITD   + +  + ++ A    I+ I 
Sbjct: 353  VELHAHTRMSNMDAVVSAETLIKTAASWGWPAIAITDHGVVQAFPDAAKAASKLDIKVIY 412

Query: 72   GCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +  +  +D   K  N           I+ L     G + L ++VS  +L    +Q  R
Sbjct: 413  GMEGYLVQEDFEQKHANH----------IIFLAKNLNGLRNLYQMVSLSHLKYLHRQP-R 461

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN----- 185
            +    ++E   E +I+ +   +G + RA     +Q  E+ LL     + D L +      
Sbjct: 462  LPKHIIEEY-REDVIIGSACEAGELIRAIV---AQKPEEELLEIASFY-DYLEIQPIGNN 516

Query: 186  --LQRHRGYDRYRESQ--------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
              L R   +   ++ +        V +LA      L+AT +  FL+ ED        A+ 
Sbjct: 517  EFLVRSDKFPHIKDDEDLRRINLKVAELAKKLGKMLIATCDVHFLNPED--------AIY 568

Query: 236  HSTVVSQK--DRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPI 291
             + ++  K  +   + P  +L+   EM++ F  L E  A E  V   R+ S +++   PI
Sbjct: 569  RAILMKGKGFEDAELQPPLFLRTTEEMLAEFDYLGEEAAYEAVVTNPRKVSDMIEKFKPI 628

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGL--EVRLAQGAIAKGYHAQDYRQ----RLDFEL 345
                             +EL +  + G   E+R      A+  + ++  +    RL  EL
Sbjct: 629  ----------------PDELYSPMIPGAAEEIRDMSYRKARSLYGENLPEVVEARLKQEL 672

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------- 398
              I    FS  +LI    ++ +  +   VG  RGS   S  A    IT+++PL       
Sbjct: 673  TPIIGHGFSVLYLIAQRLVKKSNDDGYLVG-SRGSVGSSFVATMTDITEVNPLPPHWRCP 731

Query: 399  --RFS--------------------------------LLFERFLNPDRMSMPDFDIDFCQ 424
              +FS                                + F  FL  D   +PD D++F  
Sbjct: 732  HCKFSEFVEDGSVGCGYDLPSRKCPVCGTELLKDGHDIPFAVFLGFDGDKVPDIDLNFSG 791

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + +    +Y +  +G + V +  T  ++  K A   V +  +          K +    A
Sbjct: 792  EYQPVAHKYTEELFGKDNVYRAGTIATVADKTAFGYVKKFFEE---------KGVKKHNA 842

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ--L 542
            +  SL A                            G+ R    H AGI++  R +     
Sbjct: 843  YIASLAA-------------------------GCMGVKRTTGQHPAGIMVVPRNMDVHFF 877

Query: 543  VPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             P+ R   D  +    T F+   I  + L+K D LG    T++ K L+ L  R    D  
Sbjct: 878  TPIQRPADDKNTTTITTHFDYHSI-SSRLVKLDILGHDDPTVI-KMLEDLTHR----DPK 931

Query: 600  LIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             IPFDD  T  + ++               GT GI +  +   RQ ++   P C  D++ 
Sbjct: 932  TIPFDDPATLSIFSSTKALGLDPKELGANSGTFGIPEFRTGFTRQMIDDTHPSCFSDLVR 991

Query: 646  LVSLYRPGPI----DNIVVYNNRKNGKEKIVS--------IHPLIDPMLKETQGVIIYQE 693
            +        +       ++ + +   +E I +        IH  IDP+L           
Sbjct: 992  ISGFSHGTDVWLGNAQDLIRSGQCTLREAISARDDIMMYLIHSGIDPLL---------SF 1042

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            Q M+  +   G   +   +LR               E +I    K               
Sbjct: 1043 QTMESVRKGKGIKEATVKILREG----------GIPEWYIEACQK--------------- 1077

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL-----EMDNVEKIKKFCQ- 807
                 Y F ++HA AY +++++ A+ K HYP+ F AA  ++     + D V + K + + 
Sbjct: 1078 ---IKYMFPRAHATAYVMMAWRIAYCKVHYPLAFYAAYFSIRAAEFDADVVARGKDYVKK 1134

Query: 808  --DA----------RQFNIQIMPPSVNTPCVDFKVGDNRIYYS---------------LA 840
              DA           +  I ++  +       F +    IY S               LA
Sbjct: 1135 QLDALEAKEAPDIKEKATIIVLQLAWEMYLRGFFMERVDIYASEAERFVLHEKSLLPPLA 1194

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            ++ GVG + AR I+EA  D  F S+ED   R    K
Sbjct: 1195 SLGGVGASAARSIVEARKDGLFTSIEDIKKRTGVSK 1230


>gi|49483427|ref|YP_040651.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282903819|ref|ZP_06311707.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus C160]
 gi|282905582|ref|ZP_06313437.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            Btn1260]
 gi|282908557|ref|ZP_06316387.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus WW2703/97]
 gi|283958007|ref|ZP_06375458.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus A017934/97]
 gi|297591291|ref|ZP_06949929.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
 gi|56748683|sp|Q6GHH1|DPO3_STAAR RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|49241556|emb|CAG40242.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
            MRSA252]
 gi|282327619|gb|EFB57902.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus WW2703/97]
 gi|282330874|gb|EFB60388.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            Btn1260]
 gi|282595437|gb|EFC00401.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus C160]
 gi|283790156|gb|EFC28973.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus A017934/97]
 gi|297576177|gb|EFH94893.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
 gi|315194152|gb|EFU24545.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS00]
          Length = 1438

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 202/936 (21%), Positives = 353/936 (37%), Gaps = 234/936 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYR 196
            EGL++ T    G +  A         EK  +   F ++    LY +L   +  R  +   
Sbjct: 655  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDLIDRELIRDTETLH 714

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            E   +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 715  EIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLPE 767

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR          
Sbjct: 768  AHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM--------- 818

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             E  NE         E+R    A A+  + +D  Q    RL+ EL  I    F+  +LI 
Sbjct: 819  -EGANE---------EIRELSYANARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLIS 868

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 869  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGS 927

Query: 399  RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE FL      +PD D++F  + +     Y +  +G
Sbjct: 928  GFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 987

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND       Q I       
Sbjct: 988  EDKVFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI------- 1018

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
              R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+    
Sbjct: 1019 HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPA 1065

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1119

Query: 607  ETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E   + +T               GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +               + +   LI   + +   VI  ++ +M +  + +G        
Sbjct: 1180 TDV--------------WLGNAQELIKTGICDLSSVIGCRDDIM-VYLMYAG-------- 1216

Query: 713  LRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            L  +M  KI E + K K   E  I    +N +      +  ++      Y F K+HAAAY
Sbjct: 1217 LEPSMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAY 1271

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--ARQFNI---- 814
             +++ + A+ K H+P+ + A+  T+   + +          I+   +D  +R  ++    
Sbjct: 1272 VLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKE 1331

Query: 815  ------------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                              ++ P S+  +   +F +    +     ++ G+G   A+ I+E
Sbjct: 1332 KDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGETLIPPFISVPGLGENVAKRIVE 1391

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  D PF S ED   +     L+++++E L   G+L
Sbjct: 1392 ARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSL 1424


>gi|282918963|ref|ZP_06326698.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus C427]
 gi|282316773|gb|EFB47147.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus C427]
          Length = 1438

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 204/936 (21%), Positives = 354/936 (37%), Gaps = 234/936 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYR 196
            EGL++ T    G +  A         EK  +   F ++    LY +L   +  R  +   
Sbjct: 655  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDLIDRELIRDTETLH 714

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            E   +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 715  EIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLPE 767

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR          
Sbjct: 768  AHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM--------- 818

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             E  NE         E+R    A A+  + +D  Q    RL+ EL  I    F+  +LI 
Sbjct: 819  -EGANE---------EIRELSYANARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLIS 868

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 869  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGS 927

Query: 399  RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE FL      +PD D++F  + +     Y +  +G
Sbjct: 928  GFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 987

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND       Q I       
Sbjct: 988  EDKVFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI------- 1018

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
              R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+    
Sbjct: 1019 HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPA 1065

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1119

Query: 607  ETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E   + +T               GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +          N +E       LI   + +   VI  ++ +M +  + +G        
Sbjct: 1180 TDV-------WLGNAQE-------LIKTGICDLSSVIGCRDDIM-VYLMYAG-------- 1216

Query: 713  LRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            L  +M  KI E + K K   E  I    +N +      +  ++      Y F K+HAAAY
Sbjct: 1217 LEPSMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAY 1271

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--ARQFNI---- 814
             +++ + A+ K H+P+ + A+  T+   + +          I+   +D  +R  ++    
Sbjct: 1272 VLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKE 1331

Query: 815  ------------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                              ++ P S+  +   +F +    +     ++ G+G   A+ I+E
Sbjct: 1332 KDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGETLIPPFISVPGLGENVAKRIVE 1391

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  D PF S ED   +     L+++++E L   G+L
Sbjct: 1392 ARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSL 1424


>gi|330685683|gb|EGG97324.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis VCU121]
          Length = 1438

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 204/944 (21%), Positives = 359/944 (38%), Gaps = 230/944 (24%)

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G    ID+  N K++N+          + L+V   +G + L ++VS   L+    ++ R
Sbjct: 588  LGVTNHIDI--NQKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSES-LVTYYYRTPR 644

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL-- 186
            I  S L E   EGL++ T    G +  A         EK  +   F ++    LY +L  
Sbjct: 645  IPRSLLNEY-REGLLVGTACDEGELFTAVMQRDQSEVEKIAKYYDFIEVQPPALYQDLID 703

Query: 187  -QRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +  R  +   E   ++++   +  +P++AT N+ +L E D  A  +L+A       SQ 
Sbjct: 704  RELIRDTETLHEIYHRLIEAGKSANIPVIATGNAHYLYEHDAIARKILIA-------SQP 756

Query: 244  DRP--RVT-PDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPR 294
              P  R T P+ + +   EM+     L E       + NT  +A R   ++    PI  +
Sbjct: 757  GNPLNRSTLPEAHFRTTDEMLDELHFLGEEKAYELVVTNTNALADRIERVV----PIKDK 812

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIAR 350
                  D               A  E+R    + AK  + +D  Q    RL+ EL+ I  
Sbjct: 813  LYTPRMDG--------------ANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSIIG 858

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------ 398
              FS  +LI    ++ +  +   VG  RGS   S  A    IT+++PL            
Sbjct: 859  NGFSVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCTHCKTS 917

Query: 399  ----------RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDE 429
                       F L                    FE FL      +PD D++F  + +  
Sbjct: 918  EFFDDGSVGSGFDLPDKKCPECGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPN 977

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G ++V +  T G++  K A   V   L               ND       
Sbjct: 978  AHNYTKVLFGEDKVFRAGTIGTVAEKTAFGFVKGYL---------------ND------- 1015

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q I         R A+  VDRL+   +   G+ R    H  GI++        VP Y D+
Sbjct: 1016 QGI-------HKRGAE--VDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDI 1055

Query: 550  RSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
                P+             T F+   I    ++K D LG    T+++     + Q    +
Sbjct: 1056 YDFTPIQYPADDQSSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIR-----MLQDLSGI 1109

Query: 597  DLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIED 642
            D   IP DD ET  + ++               GT G+ +  +  +RQ LE  +P    +
Sbjct: 1110 DPKTIPVDDKETMKIFSSPESLGVTEEDILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSE 1169

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++ +  L       ++ + N ++  +  I  +  +I         +++Y    +  A L 
Sbjct: 1170 LVQISGLSHGT---DVWLGNAQELIRAGICDLSSVIGC----RDDIMVY----LMYAGLE 1218

Query: 703  SGYSLSEADVLRRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
               +    + +R+  G+ + +EM +  KE  +     +   K               Y F
Sbjct: 1219 PSMAFKTMEFVRK--GRGLTDEMVEAMKENDVPDWYLDSCRKI-------------KYMF 1263

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--AR 810
             K+HAAAY +++ + A+ K H+P+ + A+  T+   + +          IK   +D  +R
Sbjct: 1264 PKAHAAAYVLMAVRIAYFKVHHPLYYYASYFTVRASDFDLITMIKDKTGIKNTVKDMYSR 1323

Query: 811  QFNI----------------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGT 847
              ++                      ++ P S+  +   DF + D+ +     A+ G+G 
Sbjct: 1324 YMDLGKKEKDVLTVLEIMNEMAHRGYRMQPISLEKSQAFDFIIEDDSLIPPFIAVPGLGE 1383

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              A+ I+EA  + PF S ED   +     L+++V+E L   G+L
Sbjct: 1384 NVAKRIVEAREEGPFLSKEDLNKKA---GLSQKVIEYLDDLGSL 1424


>gi|283470479|emb|CAQ49690.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus ST398]
          Length = 1438

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 203/936 (21%), Positives = 355/936 (37%), Gaps = 234/936 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYR 196
            EGL++ T    G +  A         EK  +   F ++    LY +L   +  R  +   
Sbjct: 655  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDLIDRELIRDTETLH 714

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            E   +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 715  EIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLPE 767

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR          
Sbjct: 768  AHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM--------- 818

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             E  NE         E+R    A A+  + +D  Q    RL+ EL  I    F+  +LI 
Sbjct: 819  -EGANE---------EIRELSYANARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLIS 868

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 869  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGS 927

Query: 399  RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE FL      +PD D++F  + +     Y +  +G
Sbjct: 928  GFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 987

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND       Q I       
Sbjct: 988  EDKVFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI------- 1018

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
              R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+    
Sbjct: 1019 HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPA 1065

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1119

Query: 607  ETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            +   + +T               GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 QVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +          N +E       LI   + +   VI  ++ +M +  + +G        
Sbjct: 1180 TDV-------WLGNAQE-------LIKTGICDLSSVIGCRDDIM-VYLMYAG-------- 1216

Query: 713  LRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            L  +M  KI E + K K   E  I    +N +      +  ++      Y F K+HAAAY
Sbjct: 1217 LEPSMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAY 1271

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--ARQFNI---- 814
             +++ + A+ K H+P+ + A+  T+   + +          I+   +D  +R  ++    
Sbjct: 1272 VLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKE 1331

Query: 815  ------------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                              ++ P S+  +   +F +  + +     ++ G+G   A+ I+E
Sbjct: 1332 KDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVE 1391

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  D PF S ED   +     L+++++E L   G+L
Sbjct: 1392 ARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSL 1424


>gi|254519189|ref|ZP_05131245.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA]
 gi|226912938|gb|EEH98139.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA]
          Length = 1442

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 191/902 (21%), Positives = 336/902 (37%), Gaps = 199/902 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I++   T  G + L +LVS  ++ D   +S R+  S L E+  +GLI+ +   +G + RA
Sbjct: 621  IIIFAKTQAGMKNLYKLVSEAHI-DNFHKSPRVRKSKLMEM-RDGLIIGSACEAGEVYRA 678

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELP 210
                 S    K ++ F      + +  +   +N    +  D  R   +++  L      P
Sbjct: 679  VLDGKSDEELKEIMGFYDYLEIQPIGNNEYLINKGNVKDEDELRSLNTKIYNLGKELNKP 738

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
            +VAT +  FL  +D     ++MA    +    +      P  YLK   EM+  FS L + 
Sbjct: 739  VVATGDVHFLDPQDEVFRKIIMAGQGFSDSENQ------PPLYLKTTEEMLREFSYLGQD 792

Query: 270  -----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
                  + N  EIA     +  +     P  IE   D+I+     E+  + V        
Sbjct: 793  GAKEVVIINPGEIADSIDVLKPIPDETYPPKIEGADDEIR-----EMTMEKVH------- 840

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +I      +  ++RLD ELN I    ++  +LI    +  +  +   VG  RGS   S
Sbjct: 841  --SIYGDPLPEIVQKRLDKELNSIINNGYAVLYLIAQKLVAKSLADGYLVG-SRGSVGSS 897

Query: 385  VTAYALTITDIDPL-----------------------------------------RFSLL 403
              A    IT+++ L                                            + 
Sbjct: 898  FVATMSNITEVNGLPPHYVCPNCKNSEFFLDGSVSSGADLEDKDCPKCGAKYIKDGHDIP 957

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  +    PD D++F  D + E+ +Y +  +G   V +  T G++  K A   V +
Sbjct: 958  FETFLGFEGDKEPDIDLNFSGDNQGEIHKYTEVLFGKGYVFKAGTIGTVAEKTAYGYVRK 1017

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             L                                 R  R +   ++RL   +    G+ R
Sbjct: 1018 YLDE-------------------------------RGLRASSAEIERL---TIGCTGIKR 1043

Query: 524  HASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                H  GI++   D  +    P+ R   D  SD+  T F+   I    L+K D LG   
Sbjct: 1044 TTGQHPGGIMVVPSDNEIYNFTPIQRPADDPTSDVTTTHFDYHSI-SGRLLKLDILGHDD 1102

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE------SSGM---- 628
             T+++   D        VD   IP +D +   L T+   LG+ + E      S G+    
Sbjct: 1103 PTMIRMLQDLTG-----VDPKTIPLNDKKVISLFTSPEALGVTKDELGCEVGSYGLPEFG 1157

Query: 629  ----RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
                R  L   QP    D++ +  L       ++ + N +   KE   ++   I      
Sbjct: 1158 TKFVRGMLVDTQPKSFADLVRISGLSHG---TDVWLNNAQYFIKEGYTTLKDCIST---- 1210

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
               +++Y    +  A +    + +  + +R+  GK + EE +K          +N +   
Sbjct: 1211 RDDIMVY----LMYAGVPPKMAFTIMESVRK--GKGLTEEFEKT-------MKENNVP-- 1255

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---- 800
               + +    K   Y F K HA AY +++ + A+ K +YP  + A   T+  D+ +    
Sbjct: 1256 ---DWYIESCKRIKYMFPKGHAVAYVMMAVRIAYFKVYYPEAYYATYFTVRADDFDADLI 1312

Query: 801  ---------KIKKFCQDARQFN------IQIMPPSVN---------------TPCVDFKV 830
                     K+ +  +   +        I ++  S                 +    F +
Sbjct: 1313 CKGPGAIKAKLDELYELGNKVTAKDKGLITVLELSYELYARGLKFLKVDLYISEATRFTI 1372

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             ++ I   ++A++GVG   A+ I+EA  +  F S ED   RV S K+++ V+E+L   G 
Sbjct: 1373 EEDGIRPPISALQGVGDNAAKSIVEARKEGEFISKEDL--RVRS-KVSKTVIETLSNHGC 1429

Query: 891  LD 892
            L+
Sbjct: 1430 LE 1431


>gi|297588407|ref|ZP_06947050.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
 gi|297573780|gb|EFH92501.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
          Length = 1421

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 149/733 (20%), Positives = 281/733 (38%), Gaps = 167/733 (22%)

Query: 142  EGLIMLTGGSSGPIDRAFF-FNSSQVAEKRL-----------LTFKKLFGDRLYVNLQRH 189
            EGL++ +G   G + +A   F S +  ++ +           L +  +   R+  NL+  
Sbjct: 633  EGLVIGSGNEDGELIKAILGFESDEKLDEIISRYDFLEVQPPLYYDGVKSKRMSFNLKSC 692

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                R    ++  L+  H  PLVA + + +  + DY   ++++      +  +K      
Sbjct: 693  EELTR----KLYDLSKKHNKPLVADSYAKYFEKTDYIFRNIILEGQPRKIYGEK-----F 743

Query: 250  PDHYLKNRSEMVSIFS----DLPEAL--ENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            P  + +   EM++ FS    D+ E +  +NT++I+     I  +     P  IE    D 
Sbjct: 744  PTLFFRTTDEMMNEFSFLEKDVAEEILIDNTIKISEMLDDIKPIPDGTFPPVIEGS--DT 801

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +  E    + +++ G ++             +    RL+ EL+ I    ++  ++I    
Sbjct: 802  ELREMTYKKARSIYGDDL------------PEIVESRLERELSSIISNGYAVLYIIAQKL 849

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------------------- 398
            ++ + ++   VG  RGS   S  A    IT+++PL                         
Sbjct: 850  VKKSNEDGYLVG-SRGSVGSSFVATMADITEVNPLIPHYICENCKHSEFIHDENIGSGVD 908

Query: 399  ----------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                              ++ FE FL  D    PD D++F  + +  V +Y +  +G  +
Sbjct: 909  LEDKICPVCGQPLKKEGHNIPFEVFLGFDGDKEPDIDLNFAGEYQPTVHKYTEELFGEGK 968

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            V +  T G++  K A           Y  +                        ++ E +
Sbjct: 969  VFRAGTIGTISDKTA-----------YGYI-----------------------KKYFEDK 994

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQ 557
                +   +  + + + G+ R +  H  G++I   D+ +    P+     DV SD+  T 
Sbjct: 995  NVYVNNSEIKYLQRGILGVKRTSGQHPGGVMIVPRDKDIEDFCPVQHPADDVNSDIITTH 1054

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK-- 615
            FN K I    ++K D LG    T+++   D        VD   IP DD ET  + ++   
Sbjct: 1055 FNYKSI-SGRILKLDLLGHDVPTIIKMLSDMTG-----VDPLTIPMDDKETMSIFSSIDA 1108

Query: 616  ------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
                        GTLGI +  ++ +R  L    P    +++ +  L         V  NN
Sbjct: 1109 LHFEELIDGLDIGTLGIPEFGTNFVRGMLRDTTPKTFSELVRISGLSHGTN----VWLNN 1164

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             ++          LI   + E +  I  ++ +M I  +  G        L +    KI E
Sbjct: 1165 AQD----------LIRDGVVELKDTICTRDDIM-IYLINKG--------LEKKRSFKIME 1205

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  +K R +   + N +++    N +    K  +Y F K+HA AY ++SY+ A+ K HY
Sbjct: 1206 TV--RKNRLLDEDTLNYMTENGVPNWYIESCKTIEYLFPKAHAVAYVMMSYRIAYFKVHY 1263

Query: 784  PVEFLAASMTLEM 796
            P  F +   T+++
Sbjct: 1264 PEAFYSTFFTIKL 1276


>gi|262037779|ref|ZP_06011221.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
            goodfellowii F0264]
 gi|261748251|gb|EEY35648.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
            goodfellowii F0264]
          Length = 1438

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 189/915 (20%), Positives = 353/915 (38%), Gaps = 221/915 (24%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + ++LV   +G + L EL+SR ++   G +  RI  + L  +  + L++ +  S      
Sbjct: 600  NTMILVKNQDGLRDLYELISRSHIEFFGNKKPRIPKTLLNSM-RKNLLLASSAS------ 652

Query: 158  AFFFNSSQV-------AEKRLLTFKKLFGDRL-------YVNLQRHRGYDRYRESQVVQL 203
            A F NS ++        E+  +  K  F D +       Y +L+R    +      V+++
Sbjct: 653  AVFGNSGELVNLYLRGTEREEIEEKAKFYDYIEIQPLSNYADLERDSLIESENAKIVLEM 712

Query: 204  A-YTHELP------LVATNNSLFLSEEDYEAHDVLMAVAHSTVV--SQKDRPRVTPDH-- 252
              Y ++L       +VAT +  +L E +        A+  S +V  S   R   + D   
Sbjct: 713  NRYFYDLGKKLDKIVVATGDVHYLEERE--------AINRSVLVLGSGMGRRVFSYDKKL 764

Query: 253  YLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPI----LPRFIEKECDDIQK- 305
            + K   EM+  FS L   EA E  VE   + + +++   PI     P  IE   D+++K 
Sbjct: 765  FFKTTEEMLEEFSYLGNDEAYEVVVENTNKINDMIESVRPIPKGFYPPKIEGAEDEVRKM 824

Query: 306  --EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              E+ +EL  + V                  +   +R++ ELN I    F+  +LI    
Sbjct: 825  TYEKLHELYGENVP-----------------EHLNERIEKELNSIIGNGFAVLYLIAQKL 867

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------RFSLL-------- 403
            ++ +  N   VG  RGS   S+ AY + IT+++ L             F+ L        
Sbjct: 868  VKKSLDNGYLVG-SRGSVGSSIVAYMMGITEVNGLYPHYRCPNCKHSEFTELEGSGVDLE 926

Query: 404  -------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                               FE F+  +   +PD D++F  + + E+ +Y +  +G + V 
Sbjct: 927  DKICPNCGTKYIKDGHAIPFEVFMGFNGDKVPDIDLNFSGEYQGEIHKYTEELFGSDNVF 986

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T  +L  K A   V +  +                      ++   + S+ +     
Sbjct: 987  RAGTISTLAEKNAFGYVKKYFE---------------------EVEGTTEISKRK----- 1020

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFN 559
                  ++ I++  EG  +    H  G+++   D+ +    P+ R   DV +D   T F+
Sbjct: 1021 ----SEIMRIAKGCEGARKTTGQHPGGMIVVPKDKSIYDFCPIQRPANDVNADSKTTHFD 1076

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK---- 615
               +++  L+K D LG    T L+     + Q    +D+  IP DD +   L +      
Sbjct: 1077 YHVMDEQ-LVKLDLLGHDDPTTLR-----ILQDLTGIDIYTIPLDDKKVMSLFSGTEALG 1130

Query: 616  ----------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
                      G+ GI +  +S ++Q L   +P    +++ +  L     +  +N   Y  
Sbjct: 1131 ATPEQIGSPVGSSGIPEFGTSFVKQMLVDTKPTTFAELVRISGLSHGTDVWLNNAQEY-- 1188

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             +NG   +  I  + D ++       + +     I + +     ++     +   K +KE
Sbjct: 1189 VRNGTATLSEIITVRDDIMNYLIDNGLDKSVAFTIMEFVRKGQPTKNPEKWKEYSKIMKE 1248

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
               K K+ +I    K                    Y F K HA AY +++ + A+ K HY
Sbjct: 1249 H--KVKQWYIDSCEK------------------IKYMFPKGHAVAYVMMAVRIAYFKVHY 1288

Query: 784  PVEFLAA---------SMTLEMDNVEKIKKFCQDA-RQFN-------------------- 813
            P+EF  A          MT     ++++KK   +  R+ N                    
Sbjct: 1289 PLEFYTAFLNRKVEDFKMTAMFKPIDELKKSRTELDRKGNLNAKEKQELFLYEILIEMHY 1348

Query: 814  --IQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
              I++M   +  +    F++ + +I   L A+ G+G   A +++    +  F S+ED   
Sbjct: 1349 RGIELMQIDIYKSDARQFRIENGKIRMPLIAMDGLGEAVAINVINERKNGEFLSIEDLVK 1408

Query: 871  RVDSKKLNRRVLESL 885
            R    KLN+ V++ L
Sbjct: 1409 RT---KLNKTVVDLL 1420


>gi|320529719|ref|ZP_08030798.1| DNA polymerase III, alpha subunit [Selenomonas artemidis F0399]
 gi|320138080|gb|EFW29983.1| DNA polymerase III, alpha subunit [Selenomonas artemidis F0399]
          Length = 1259

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 215/988 (21%), Positives = 358/988 (36%), Gaps = 230/988 (23%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
            V L  H+  S L+  +    +++  A    PA+AITD   + +  E    A A       
Sbjct: 344  VELHAHTKMSALDAVVPPKTLVETAARWGWPAVAITDHGVVQAFPEAMNTARALKKKGVD 403

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS--RMYLLDQ 124
            I+ I G +  +      + +N           I+ L     G   L +LVS   +     
Sbjct: 404  IKIIYGMEGYLIDDPAQQRSNH----------IIFLAKNKTGLYNLYKLVSISHIRFFRG 453

Query: 125  GKQSVRICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             K+  R C+  + L+E   +GLI+ +   +G + RA     S    +R+  F      + 
Sbjct: 454  SKKRGRPCVPRAILEEY-RDGLIVGSACEAGELIRAIVRGESDEELERIAAFYDFLEIQP 512

Query: 183  YVNLQRHRGYDRYR----------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
              N    +  DR+             +V +LA     PL+AT +  FL+ ED     +L 
Sbjct: 513  IHNNDFLKIDDRFPIRDDEDLRNINRKVSELAEKLGKPLIATCDVHFLNPEDAVYRAMLQ 572

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAP 290
                +      DR    P  YL+   EM++ F  L    A E  V   RR +  ++   P
Sbjct: 573  ---KANGYRDADR---QPPLYLRTTDEMLAEFDYLGVERAYECVVTNPRRIADEVEEFLP 626

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFE 344
            I                 +EL    V G +  + + +  K          Q    RLD E
Sbjct: 627  I----------------PDELYAPMVPGADREIEEMSYRKARRLYGENLPQIVSDRLDLE 670

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------ 398
            L  I +  FS  ++I    ++ +  +   VG  RGS   S  A  + +T+++PL      
Sbjct: 671  LKPILKHGFSALYIIAQRLVKKSNDDGYLVG-SRGSVGSSFVATMIGVTEVNPLPPHYRC 729

Query: 399  ------RF-----------------------------SLLFERFLNPDRMSMPDFDIDFC 423
                  +F                             ++ F  FL  D   +PD D++F 
Sbjct: 730  KHCQYNKFITDGSVGSGFDLPSMDCPVCGTPLIKDGHNIPFAVFLGFDGDKVPDIDLNFS 789

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D +    +Y +  +G   V +  T   LQ K A    G A+                  
Sbjct: 790  GDYQPVAHKYTEVLFGKMNVFRAGTIAGLQDKNAY---GYAMHY---------------- 830

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--Q 541
                      +D   ++ R   P ++ ++   +   G+      HA GI++  R +    
Sbjct: 831  ---------YEDMGVQKGR---PYIEHMM---RGCMGVKATTGQHAGGIMVVPRDMDVHY 875

Query: 542  LVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
              P+ R   ++ SD   T F+   I +  L+K D LG    T++ K L+ L  R    D 
Sbjct: 876  FTPIQRPANNMESDTLTTHFDYHSISER-LVKLDILGHDDPTVI-KMLEELTHR----DP 929

Query: 599  SLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDII 644
              IPFDD  T  + T+               GT GI +  +S  ++ ++   PDC  D++
Sbjct: 930  ETIPFDDPATMSIFTSTDALGITPEELGANMGTYGIPEFRTSFTQKMIDDSNPDCFADLV 989

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
              +S +  G   N+ + N +            LI       +  I  ++ +M        
Sbjct: 990  R-ISGFSHG--TNVWLGNAQD-----------LIKAGTSTLKDAISARDDIMN------- 1028

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD---YGF 761
            Y +     +   +  K  E + K K     G + + + K  A  I E   +      Y F
Sbjct: 1029 YLMQNG--IDPLLSFKTMENVRKGK-----GIAPDVVEKLYAGGIPEWYVESCQKIKYLF 1081

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIKKFCQD 808
             ++HA AY ++ Y+ A+ K HYP+ + AA  ++  D  +              I     +
Sbjct: 1082 PRAHATAYVMMGYRIAFCKVHYPLAYYAAYFSIRADEFDANIIAKGRDAIKAAIDALNAE 1141

Query: 809  ARQFNIQIMPPSVNTPCV----------DFKVGDNRIYYS---------------LAAIK 843
            AR+   ++     +T  V           F      IY S               L A+ 
Sbjct: 1142 AREHRGKLDNKKQDTLIVLQLAWEMYLRGFACEPVDIYTSNAATFILHEKSLLPPLTALP 1201

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSR 871
            G+G   A+ I+EA  D  F S+ED  +R
Sbjct: 1202 GMGQKAAQAIVEARKDGVFISIEDLATR 1229


>gi|217077387|ref|YP_002335105.1| DNA polymerase III PolC [Thermosipho africanus TCF52B]
 gi|217037242|gb|ACJ75764.1| DNA polymerase III, alpha subunit, Gram-positive type [Thermosipho
            africanus TCF52B]
          Length = 1365

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 182/890 (20%), Positives = 344/890 (38%), Gaps = 188/890 (21%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I +LV    G + L +LVS  ++    K    +  + L+E   EGLI  TG   G I  A
Sbjct: 544  ITILVKDKIGLKNLYKLVSDAHV-KYFKYVPFVPKNVLKEY-KEGLIFGTGCEQGEIFEA 601

Query: 159  FFFNSSQVAEKRLLT---FKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATN 215
               +++      LL    + ++F     V++ + +  + ++  ++  LA   ++P+V  +
Sbjct: 602  LKGSATDEEIIELLKEYDYVEIFPLSTIVSVNKEQAKEIFK--RLYFLAKRLKMPVVMVD 659

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM----VSIFSDLPEAL 271
            N+ +L  ED +A  VL++    +    +D        YL+   E+    + IF D   A 
Sbjct: 660  NAHYLEPEDIKARHVLLSPKEKSNPHDEDLRDKDAQLYLRTTDELLKEAIEIFGDEKIAR 719

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
            E  +E   + + +++  AP+  +        I   EEN      V  L ++ A+      
Sbjct: 720  EVVIENPNKIADMIEDIAPVKKKL---HPPIIDGAEEN------VRNLSLKRAKELYGDP 770

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
               +   +RL+ EL  I    ++  + I    ++ A ++   VG  RGS   S  AY + 
Sbjct: 771  L-PEVIEKRLEKELKSIIDNGYAVLYEIAHLIVKKANEDGYVVG-SRGSVGSSFVAYLMG 828

Query: 392  ITDIDPL------------RFS---------------------------LLFERFLNPDR 412
            IT+++PL             FS                           + FE F+    
Sbjct: 829  ITEVNPLPPHYICPNCKYLEFSKEVGSGYDLPDKLCPKCGTKLNKTGQDIPFEVFMGFKG 888

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
              +PD D++F  + ++    Y+   +G + V +  T  ++  ++A+  V   +++    +
Sbjct: 889  DKVPDIDLNFSGEYQERAHNYIVELFGKDNVLRAGTISTIAERSAIGYVRSYMELKDETL 948

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            +                          + RLA           +K+ G+ R    H  G+
Sbjct: 949  NTA-----------------------EQVRLA-----------EKVAGVKRTTGQHPGGL 974

Query: 533  VI--GDRPLSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            +I   D  +    P+        S++  T F  + I    L+K D LG    T+++   +
Sbjct: 975  MIVPKDMTVYDFTPIQYPANKKDSEMCTTHFAYESIHD-DLVKLDALGHDDPTMIKLLYE 1033

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALE 633
            +       VD + +P DD ET  +               T  GT+GI +  +  +++ L+
Sbjct: 1034 YTG-----VDPTTVPMDDKETLEIFSSLKPLKVRASDLGTDVGTIGIPEFGTDFVQEMLK 1088

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +P    +++ +  L          V+ N  N ++ I S    +  ++     ++IY  
Sbjct: 1089 ETRPKSFAELVRISGLSH-----GTDVWLN--NAQDIIRSGKATLSEVISCRDDIMIY-- 1139

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER-----FISGASKNGISKTIAVN 748
              +  A +    +    + +R+  G   KEE D  +E      FI    K          
Sbjct: 1140 --LIKAGVEESTAFKIMENVRKGKGI-TKEEEDLMREHNVPEWFIESCKK---------- 1186

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD--NVEKI---- 802
                      Y F K+HA AY  ++++ A+ K H+P+ + AA  +++ D  ++E I    
Sbjct: 1187 --------IKYLFPKAHAVAYVSMAFRIAYFKVHFPLAYYAAFFSIKGDEFSIETILKGP 1238

Query: 803  -----------KKFCQDARQFN---------------IQIMPPSV-NTPCVDFKVGDNRI 835
                        K  +D ++ N                  +PP +  +    F + DN++
Sbjct: 1239 NAIKKRLTELSVKMKKDVKEKNEEKVLEAALEMYLRGFSFLPPDILKSDYRRFLIEDNKL 1298

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
               L  I GVG + A  I++A  +K F S+ED   R    K +   ++ L
Sbjct: 1299 RIPLNRIPGVGDSVAYSIVQAREEKEFTSIEDLKKRTKLSKAHITTMKKL 1348


>gi|269202881|ref|YP_003282150.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
 gi|295406201|ref|ZP_06816008.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297244429|ref|ZP_06928312.1| DNA polymerase III [Staphylococcus aureus A8796]
 gi|262075171|gb|ACY11144.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
 gi|294968789|gb|EFG44811.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297178459|gb|EFH37705.1| DNA polymerase III [Staphylococcus aureus A8796]
          Length = 1436

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 203/936 (21%), Positives = 354/936 (37%), Gaps = 234/936 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 595  NKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 652

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYR 196
            EGL++ T    G +  A         EK  +   F ++    LY +L   +  R  +   
Sbjct: 653  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDLIDRELIRDTETLH 712

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            E   +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 713  EIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLPE 765

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR          
Sbjct: 766  AHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM--------- 816

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             E  NE         E+R      A+  + +D  Q    RL+ EL  I    F+  +LI 
Sbjct: 817  -EGANE---------EIRELSYTNARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLIS 866

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 867  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGS 925

Query: 399  RFSLL-------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE FL      +PD D++F  + +     Y +  +G
Sbjct: 926  GFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 985

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND       Q I       
Sbjct: 986  EDKVFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI------- 1016

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
              R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+    
Sbjct: 1017 HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPA 1063

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1064 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1117

Query: 607  ETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E   + +T               GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1118 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1177

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +          N +E       LI   + +   VI  ++ +M +  + +G        
Sbjct: 1178 TDV-------WLGNAQE-------LIKTGICDLSSVIGCRDDIM-VYLMYAG-------- 1214

Query: 713  LRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            L  +M  KI E + K K   E  I    +N +      +  ++      Y F K+HAAAY
Sbjct: 1215 LEPSMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAY 1269

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--ARQFNI---- 814
             +++ + A+ K H+P+ + A+  T+   + +          I+   +D  +R  ++    
Sbjct: 1270 VLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKE 1329

Query: 815  ------------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                              ++ P S+  +   +F +  + +     ++ G+G   A+ I+E
Sbjct: 1330 KDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVE 1389

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  D PF S ED   +     L+++++E L   G+L
Sbjct: 1390 ARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSL 1422


>gi|15924254|ref|NP_371788.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926847|ref|NP_374380.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus N315]
 gi|148267754|ref|YP_001246697.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH9]
 gi|150393813|ref|YP_001316488.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH1]
 gi|156979585|ref|YP_001441844.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315620|ref|ZP_04838833.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
            CF-Marseille]
 gi|255006051|ref|ZP_05144652.2| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
            Mu50-omega]
 gi|257795680|ref|ZP_05644659.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
 gi|258416083|ref|ZP_05682351.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|258421666|ref|ZP_05684590.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
            A9719]
 gi|258434822|ref|ZP_05688896.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A9299]
 gi|258444602|ref|ZP_05692931.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A8115]
 gi|258447565|ref|ZP_05695709.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A6300]
 gi|258449407|ref|ZP_05697510.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A6224]
 gi|258454786|ref|ZP_05702750.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A5937]
 gi|282892752|ref|ZP_06300987.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A8117]
 gi|282927606|ref|ZP_06335222.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A10102]
 gi|296274822|ref|ZP_06857329.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MR1]
 gi|54036992|sp|P63982|DPO3_STAAN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|54040953|sp|P63981|DPO3_STAAM RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|166217451|sp|A7X1P4|DPO3_STAA1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|13701064|dbj|BAB42359.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
            subsp. aureus N315]
 gi|14247034|dbj|BAB57426.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
            subsp. aureus Mu50]
 gi|147740823|gb|ABQ49121.1| DNA polymerase III catalytic subunit, PolC type [Staphylococcus
            aureus subsp. aureus JH9]
 gi|149946265|gb|ABR52201.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus JH1]
 gi|156721720|dbj|BAF78137.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
            subsp. aureus Mu3]
 gi|257789652|gb|EEV27992.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
 gi|257839231|gb|EEV63707.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|257842352|gb|EEV66777.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
            A9719]
 gi|257849183|gb|EEV73165.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A9299]
 gi|257850095|gb|EEV74048.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A8115]
 gi|257853756|gb|EEV76715.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A6300]
 gi|257857395|gb|EEV80293.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A6224]
 gi|257863169|gb|EEV85933.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A5937]
 gi|282590609|gb|EFB95686.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A10102]
 gi|282764749|gb|EFC04874.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A8117]
 gi|285816946|gb|ADC37433.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981]
 gi|312829658|emb|CBX34500.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus ECT-R 2]
 gi|315131058|gb|EFT87042.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727084|gb|EGG63540.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus 21172]
          Length = 1438

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 203/936 (21%), Positives = 354/936 (37%), Gaps = 234/936 (25%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYR 196
            EGL++ T    G +  A         EK  +   F ++    LY +L   +  R  +   
Sbjct: 655  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDLIDRELIRDTETLH 714

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            E   +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 715  EIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLPE 767

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR          
Sbjct: 768  AHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM--------- 818

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             E  NE         E+R      A+  + +D  Q    RL+ EL  I    F+  +LI 
Sbjct: 819  -EGANE---------EIRELSYTNARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLIS 868

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 869  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGS 927

Query: 399  RFSLL-------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE FL      +PD D++F  + +     Y +  +G
Sbjct: 928  GFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 987

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND       Q I       
Sbjct: 988  EDKVFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI------- 1018

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
              R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    P+    
Sbjct: 1019 HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPA 1065

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1119

Query: 607  ETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E   + +T               GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +          N +E       LI   + +   VI  ++ +M +  + +G        
Sbjct: 1180 TDV-------WLGNAQE-------LIKTGICDLSSVIGCRDDIM-VYLMYAG-------- 1216

Query: 713  LRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            L  +M  KI E + K K   E  I    +N +      +  ++      Y F K+HAAAY
Sbjct: 1217 LEPSMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAY 1271

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--ARQFNI---- 814
             +++ + A+ K H+P+ + A+  T+   + +          I+   +D  +R  ++    
Sbjct: 1272 VLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKE 1331

Query: 815  ------------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                              ++ P S+  +   +F +  + +     ++ G+G   A+ I+E
Sbjct: 1332 KDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVE 1391

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  D PF S ED   +     L+++++E L   G+L
Sbjct: 1392 ARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSL 1424


>gi|299144044|ref|ZP_07037124.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus
            sp. oral taxon 386 str. F0131]
 gi|298518529|gb|EFI42268.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus
            sp. oral taxon 386 str. F0131]
          Length = 1421

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 184/903 (20%), Positives = 334/903 (36%), Gaps = 211/903 (23%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            SI LLV    G + L +LVS  ++ +   +  ++  S + +   EG+++ +G SS  + +
Sbjct: 595  SISLLVKNNVGLKNLYKLVSESHM-NYVNRVAKVPRSLINKY-REGILVGSGNSSSELFK 652

Query: 158  AFFFNSSQVAEKRL------LTFKKLFGDRLYVNLQRHRGYD--RYRESQVVQLAYTHEL 209
            A F   S+   + +      +  + L  +  Y+     + YD  ++   ++  L     +
Sbjct: 653  AVFNMESEENIRNIARYYDYIEIQPLENNLNYIENNLVKDYDTLKFINKKLYDLGKELNI 712

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP----RVTPDHYLKNRSEMVSIFS 265
            P+VAT +  +L E+D     V++         Q  RP     +    + +   EM+  FS
Sbjct: 713  PVVATGDVYYLDEKDDITRRVILN-------GQTGRPPENAHIPQKLFFRTTDEMLEEFS 765

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK---EEENELRNKAV 316
             L +       ++NT  IA  C  I  +     P  IE    D++K   E+ +E+    +
Sbjct: 766  YLGKDQSYEVVVKNTNMIANLCEDIKPIPDGTYPPIIEGADSDLRKICYEKAHEIYGDNL 825

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
              +                    RLD ELN I    ++  ++I    ++ +  +   VG 
Sbjct: 826  PEI-----------------VENRLDRELNSIISNGYAVLYIIAQKLVKKSNDDGYLVG- 867

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A   +IT+++PL                                      
Sbjct: 868  SRGSVGSSFAATMSSITEVNPLPPHYICPNCKYFEDMSNGTVDSGIDLPDKICPVCGSEL 927

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL  +    PD D++F  + +    +Y +  +G   V +  T G++  K
Sbjct: 928  KKDGHDIPFEVFLGFNGDKEPDIDLNFAGEYQPTAHKYTEELFGEGYVFRAGTIGTVAEK 987

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V +                       + +  +++  +DR   I+
Sbjct: 988  TA-----------YGYVKKF----------------------YEDKNISNVEIDR---IA 1011

Query: 516  QKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIK 570
            +   G+ R +  H  G++I    + +    P+     D  S +  T F+  +I    ++K
Sbjct: 1012 KAAIGVKRTSGQHPGGVMICPKSKEIFDFTPIQYPADDKSSGVITTHFDYNFIH-GKILK 1070

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKG 616
             D LG    T+++   DF      K     IP DD +T  L +              + G
Sbjct: 1071 LDILGHDGPTIIKMLEDFTGLNSQK-----IPLDDEKTISLFSCSDELKLNENIFSSSTG 1125

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            TLGI +  ++ ++Q L    P    +++ +  L          V+ N  N +E       
Sbjct: 1126 TLGIPEFGTNFVKQMLIETHPKNFAELVRISGLSHGTN-----VWTN--NAQE------- 1171

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            L+     +   VI  +E +M         +    D + +   +K K   D+QK+      
Sbjct: 1172 LVKAGKAKLSDVICTREDIMLYLIRAGAENKMAFDTMEKV--RKGKGLSDEQKK------ 1223

Query: 737  SKNGISKTIAV-NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                I  T+ + N +    +  +Y F K+HA AY ++S++ A+ K +YP+ + A   T++
Sbjct: 1224 ----IMNTLPLPNWYIDSCEKIEYMFPKAHAVAYVMLSFRIAYYKLNYPLAYYATYFTIK 1279

Query: 796  ---------MDNVEKIKKFCQDARQFN------------------------IQIMPPSV- 821
                     M  V  IK+   D    N                         +  P  + 
Sbjct: 1280 LADFNGELIMKGVNAIKERINDLNNSNDKLSAKEKGELTVLEVVLEMFARGFEFAPVDIY 1339

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
             +    F + DN++   L A  GVG T A +I+       F S+ED   R  + K    +
Sbjct: 1340 KSNASKFDIYDNKVLMPLRAFFGVGETVADNIVSEREKGEFISIEDIIKRTKATKSVIDI 1399

Query: 882  LES 884
            L S
Sbjct: 1400 LNS 1402


>gi|150020931|ref|YP_001306285.1| DNA polymerase III PolC [Thermosipho melanesiensis BI429]
 gi|149793452|gb|ABR30900.1| DNA polymerase III, alpha subunit [Thermosipho melanesiensis BI429]
          Length = 1362

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 180/868 (20%), Positives = 333/868 (38%), Gaps = 221/868 (25%)

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT---FKKLFGDRLYVNLQRHRGYDRYRES 198
            EGL++ TG  SG I +A   +S+      +L    + ++F     V+++R      Y+  
Sbjct: 581  EGLLLGTGCESGEIFQALTGSSTDEEILEMLKDYDYVEIFPLDTIVSVEREVAKQVYK-- 638

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++ +LA   +LP+V  +N+ FL  ED +A  VL++    +     D        YL+   
Sbjct: 639  RLYELAKRLDLPVVMVSNAHFLEPEDIKARHVLLSPIEKSNPHDDDLRDKDAKLYLRTTD 698

Query: 259  EMV----SIFSDLPEALENTVEIARRCSFIL---------QVHAPILPRFIEKECDDIQK 305
            EM+     IF D   A E  VE   + +  +         ++H PI+             
Sbjct: 699  EMMKEAFEIFEDEKIAYEIVVENTNKIANNMIEDVKPIKRKLHPPII------------- 745

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                E  ++ V  L ++ A+             +RL+ EL  I    ++  + I    ++
Sbjct: 746  ----EGADEKVRSLSIKRAKELYGDPL-PDVIEKRLEKELESIIGHGYAVLYEIAHLIVK 800

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------RFS------------ 401
             A ++   VG  RGS   S  AY + IT+++PL             FS            
Sbjct: 801  KANEDGYVVG-SRGSVGSSFVAYLMGITEVNPLPPHYLCPKCKYLEFSKDMGSGYDLPNK 859

Query: 402  ---------------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE F+      +PD D++F  + ++    Y+   +G + V + 
Sbjct: 860  LCPKCGTKLEKTGQDIPFEVFMGFKGDKVPDIDLNFSGEYQERAHSYIVELFGKDNVLRA 919

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T  ++  K+A+  V   ++            +  +  H    QA        + RLA  
Sbjct: 920  GTISTIAEKSAIGYVKSYME------------VKGETLH----QA-------EQIRLA-- 954

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVR---SDLPVTQFNMK 561
                     + + G+ R    H  G++I   D  +    P+        S++  T F  +
Sbjct: 955  ---------EMVAGVKRTTGQHPGGLMIVPKDMTVYDFTPIQYPANKKDSEMCTTHFAYE 1005

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT------- 614
             I    L+K D LG    T+L+   ++       VD + +P DD +T  + ++       
Sbjct: 1006 SIHD-DLVKLDALGHDDPTMLKLLYEYTG-----VDPTKVPMDDKKTLEIFSSLKPLKVK 1059

Query: 615  -------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
                    GT+GI +  ++ +++ L+  +P    +++ +  L          V+ N  N 
Sbjct: 1060 AEELGIDVGTIGIPEFGTNFVQEMLKETRPKTFAELVRISGLSH-----GTDVWLN--NA 1112

Query: 668  KEKIVSIHPLIDPMLKETQGVIIY-------QEQVMQIAQ-LLSGYSLSEADVLRRAMGK 719
            ++ I S +  +  ++     ++IY       + +  +I + +  G  +SE D        
Sbjct: 1113 QDIIKSGNATLSEVISCRDDIMIYLINAGVEESRAFKIMENVRKGKGISEDD-------- 1164

Query: 720  KIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
               E++ ++K   E FI    K                    Y F K+HA AY  ++++ 
Sbjct: 1165 ---EKLMREKNVPEWFIQSCKK------------------IKYLFPKAHAVAYVSMAFRI 1203

Query: 777  AWMKTHYPVEFLAASMTLEMD---------NVEKIKK--------FCQDARQFNIQ---- 815
            A+ K HYP+ + AA  +++ D          ++ IKK          +D ++ N +    
Sbjct: 1204 AYFKVHYPLAYYAAYFSIKGDEFSIETILRGIKSIKKKLAELNAQMKKDVKEKNEEKVLE 1263

Query: 816  -----------IMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
                        +PP +  +    F +  N +   L  I GVG   A  I++A  +KPF 
Sbjct: 1264 AALEMYLRGYSFLPPDILKSDYRRFIIEGNELRIPLNKIPGVGDNVALSIIQARMEKPFT 1323

Query: 864  SLEDFCSRVDSKKLN------RRVLESL 885
            S++D   R    K +       R+LE L
Sbjct: 1324 SIDDLKKRTKLSKAHINTMRKLRILEDL 1351


>gi|323464622|gb|ADX76775.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            pseudintermedius ED99]
          Length = 1435

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 199/929 (21%), Positives = 353/929 (37%), Gaps = 221/929 (23%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V    G + L ++VS   L+    ++ RI  S L E   
Sbjct: 595  NKKLSNEDAYKRARPQHVTLIVQNQTGLKNLFKIVS-ASLVQYYYRTPRIPRSLLDE-HR 652

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--------KKLFGDRLYVNLQRHRGYD 193
            EGL++ T    G +  A      Q   +R+  +          L+ D L  +L R     
Sbjct: 653  EGLLVGTACDEGEVFTAVM-QRDQSEVERIAKYYDYIEVQPPALYQDLLDRDLIRDNETL 711

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-P 250
                 +++++  T+++P++AT N+ +L E D  A  +L+A       SQ   P  R T P
Sbjct: 712  VEIYERILKVGETNQIPVIATGNAHYLHEHDAIARRILIA-------SQPGNPLNRSTLP 764

Query: 251  DHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            + + +   EM+  F  L E       +ENT  +A R   ++ +   +    +E   ++I+
Sbjct: 765  EAHFRTTDEMLDAFHFLGEERAHQIVVENTRALAERIEKVVPIKDKLYTPNMEGANEEIR 824

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              E +    K + G E  L Q  I           RL+ EL  I    F+  +LI    +
Sbjct: 825  --EMSYRHAKQLYGEE--LPQIVI----------DRLEKELESIIGNGFAVIYLISQRLV 870

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------RFSL 402
            + + ++   VG  RGS   S  A    IT+++PL                       F L
Sbjct: 871  KKSLEDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPSCKKSEFFDDGSVGSGFDL 929

Query: 403  ------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                               FE FL      +PD D++F  + + +   Y +  +G E V 
Sbjct: 930  PDKTCECGTEMIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPKAHNYTKVLFGEEYVY 989

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++  K A   V   L               ND       Q I         R A
Sbjct: 990  RAGTIGTVAEKTAFGFVKGYL---------------ND-------QGI-------HKRGA 1020

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV--------- 555
            +  VDRL+   +   G+ R    H  GI++        VP Y D+    P+         
Sbjct: 1021 E--VDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFTPIQYPADDQSS 1067

Query: 556  ----TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY-- 609
                T F+   I    ++K D LG    T+++   D        +D   IP DD +T   
Sbjct: 1068 SWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDQQTMRI 1121

Query: 610  ------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                         +L   GT G+ +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSSPEALGVTEEEILAKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGTDV-- 1179

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
                    N +E I S    +   +     +++Y    +  A L    +    + +R+  
Sbjct: 1180 -----WLGNAQELIRSGTCTLSSCIGCRDDIMVY----LMYAGLEPSLAFKIMEAVRK-- 1228

Query: 718  GKKIKEEMDK-QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            GK + EE ++  KE  +     +   K               Y F K+HAAAY +++ + 
Sbjct: 1229 GKGLTEEFEQVMKENNVPDWYMDSCKKI-------------KYMFPKAHAAAYVLMAVRI 1275

Query: 777  AWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQD--ARQFNI----------- 814
            A+ K H+P+ + A+  T+   +          + I++  +D  AR  ++           
Sbjct: 1276 AYFKVHHPLYYYASYFTVRASDFDLITMVKDKDSIRQTVKDMYARYMDLGKKEKDVLTVL 1335

Query: 815  -----------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
                       ++ P ++  +   +F +  + +     A+ G+G   A+ I+EA  + PF
Sbjct: 1336 EIMNEMAHRGYRMQPVNLEKSQAYEFIIEGDTLIPPFVAVPGLGENVAKRIVEAREEGPF 1395

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             S ED   +     ++++++E L   G+L
Sbjct: 1396 LSKEDLNKKA---GVSQKIIEYLDSLGSL 1421


>gi|319892281|ref|YP_004149156.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
            HKU10-03]
 gi|317161977|gb|ADV05520.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
            HKU10-03]
          Length = 1435

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 194/926 (20%), Positives = 351/926 (37%), Gaps = 215/926 (23%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V    G + L ++VS   L+    ++ RI  S L E   
Sbjct: 595  NKKLSNEDAYKRARPQHVTLIVQNQTGLKNLFKIVS-ASLVQYYYRTPRIPRSLLDE-HR 652

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--------KKLFGDRLYVNLQRHRGYD 193
            EGL++ T    G +  A      Q   +R+  +          L+ D L  +L R     
Sbjct: 653  EGLLIGTACDEGEVFTAVM-QRDQSEVERIAKYYDYIEVQPPALYQDLLDRDLIRDNETL 711

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                 +++++  T+++P++AT N+ +L E D  A  +L+A      +++       P+ +
Sbjct: 712  VEIYERILKVGETNQIPVIATGNAHYLHEHDAIARRILIAAQPGNPLNRS----TLPEAH 767

Query: 254  LKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   EM+  F  L E       +ENT  +A R   ++ +   +    +E   ++I+  E
Sbjct: 768  FRTTDEMLDAFHFLGEERAHQIVVENTRALAERIEKVVPIKDKLYTPNMEGANEEIR--E 825

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             +    K + G E  L Q  I           RL+ EL  I    F+  +LI    ++ +
Sbjct: 826  MSYRHAKQLYGEE--LPQIVI----------DRLEKELESIIGNGFAVIYLISQRLVKKS 873

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------RFSL--- 402
             ++   VG  RGS   S  A    IT+++PL                       F L   
Sbjct: 874  LEDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPSCKKSEFFDDGSVGSGFDLPDK 932

Query: 403  ---------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                            FE FL      +PD D++F  + + +   Y +  +G E V +  
Sbjct: 933  TCECGTEMIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPKAHNYTKVLFGEEYVYRAG 992

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G++  K A   V   L               ND       Q I         R A+  
Sbjct: 993  TIGTVAEKTAFGFVKGYL---------------ND-------QGI-------HKRGAE-- 1021

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV------------ 555
            VDRL+   +   G+ R    H  GI++        VP Y D+    P+            
Sbjct: 1022 VDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFTPIQYPADDQSSSWM 1070

Query: 556  -TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY----- 609
             T F+   I    ++K D LG    T+++   D        +D   IP DD +T      
Sbjct: 1071 TTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDQQTMRIFSS 1124

Query: 610  ---------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                      +L   GT G+ +  +  +RQ LE  +P    +++ +  L     +     
Sbjct: 1125 PEALGVTEEEILAKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGTDV----- 1179

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                 N +E I S    +   +     +++Y    +  A L    +    + +R+  GK 
Sbjct: 1180 --WLGNAQELIRSGTCTLSSCIGCRDDIMVY----LMYAGLEPSLAFKIMEAVRK--GKG 1231

Query: 721  IKEEMDK-QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            + EE ++  KE  +     +   K               Y F K+HAAAY +++ + A+ 
Sbjct: 1232 LTEEFEQVMKENNVPDWYMDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYF 1278

Query: 780  KTHYPVEFLAASMTLEMDNV---------EKIKKFCQD--ARQFNI-------------- 814
            K H+P+ + A+  T+   +          + I++  +D  AR  ++              
Sbjct: 1279 KVHHPLYYYASYFTVRASDFDLITMVKDKDSIRQTVKDMYARYMDLGKKEKDVLTVLEIM 1338

Query: 815  --------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
                    ++ P ++  +   +F +  + +     A+ G+G   A+ I+EA  + PF S 
Sbjct: 1339 NEMAHRGYRMQPVNLEKSQAYEFIIEGDTLIPPFVAVPGLGENVAKRIVEAREEGPFLSK 1398

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGAL 891
            ED   +     ++++++E L   G+L
Sbjct: 1399 EDLNKKA---GVSQKIIEYLDSLGSL 1421


>gi|255520144|ref|ZP_05387381.1| DNA polymerase III (alpha subunit) DnaE [Listeria monocytogenes FSL
            J1-175]
          Length = 329

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 110/222 (49%), Gaps = 11/222 (4%)

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
            ++ PS+N     F+V  ++ I YS   I+ V T     I+      PF    DFC R+  
Sbjct: 1    MLAPSINHSNYYFQVENESSIRYSFRVIRKVPTKFILEIINERKKAPFRDFFDFCERMPH 60

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+FA E   F
Sbjct: 61   KMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLFA-EDDDF 117

Query: 935  SDKITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-R 991
              K+          S+  + E E+   G Y S HP+  Y+  L+ + I      +A +  
Sbjct: 118  LKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAIT----RLANLSS 173

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 174  GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 215


>gi|20807845|ref|NP_623016.1| DNA polymerase III PolC [Thermoanaerobacter tengcongensis MB4]
 gi|24418364|sp|Q8RA32|DPO3_THETN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|20516408|gb|AAM24620.1| DNA polymerase III alpha subunit, the Gram-positive type
            [Thermoanaerobacter tengcongensis MB4]
          Length = 1401

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 190/901 (21%), Positives = 335/901 (37%), Gaps = 197/901 (21%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            + +LV   +G + L E++SR  L +   ++ RI  S L ++  EGLI+ +    G + RA
Sbjct: 580  VTILVKDQKGLRNLYEIISRSNL-EFFHRTPRIPKSLLVKM-REGLIIGSACEQGEVFRA 637

Query: 159  FFFNSSQVAEKRL---------LTFKKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTH 207
                 S + EK+L         L  + +  +   +     R  +  +E   ++ +L   +
Sbjct: 638  LV---SNLEEKKLEDIINFYDYLEIQPVGNNEFLIERGEVRSVEELKEINRKIYELGKKY 694

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
               +VAT +  FL   D     +LMA         KD  R  P  Y +   EM+  F  L
Sbjct: 695  NKLVVATGDVHFLDPWDDVYRKILMAGK-----GYKDADR-QPPLYFRTTEEMLMEFEYL 748

Query: 268  PE--ALENTVEIARRCSFILQVHAPI----LPRFIE---KECDDIQKEEENELRNKAVAG 318
             E  A E  +E   + + I++   PI     P  IE   +E   I  E+ +E+    +  
Sbjct: 749  GEEAAREVVIENPNKIAEIVEDVKPIPEGTFPPVIEGAEEELRRITLEKAHEIYGDPLPP 808

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            +                  ++RLD ELN I    ++  ++I    +  + ++   VG  R
Sbjct: 809  I-----------------VQERLDRELNAIINNGYAVMYVIAQKLVSKSLQDGYLVG-SR 850

Query: 379  GSGAGSVTAYALTITDIDPL---------------------------------------- 398
            GS   S+ A    IT+++PL                                        
Sbjct: 851  GSVGSSLVATMSGITEVNPLPPHYVCPKCKHSEFVTDGSFGCGVDMPDKYCPNCGTLMKK 910

Query: 399  -RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
              F + FE F+  +    PD D++F  + +    RY +  +G   V +  T G+L  K A
Sbjct: 911  DGFDIPFEVFMGFEGDKEPDIDLNFSGEYQPIAHRYTEELFGKGHVFRAGTIGTLADKTA 970

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
                       Y  V                        ++ E R        +  ++  
Sbjct: 971  -----------YGYV-----------------------KKYFEERNLTVHKSEIKRLTMG 996

Query: 518  LEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFD 572
              G+ R    H  G+++   D+ +    P+ R      +D+  T F+   +    L+K D
Sbjct: 997  CTGIKRTTGQHPGGVMVVPKDKSIYDFTPIQRPADAEDTDVITTHFDYHSL-SGKLLKLD 1055

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
             LG    T+++   D        V+   IP DD +T  L T+   LGI   E  G     
Sbjct: 1056 ILGHDDPTVIRMLEDLTG-----VNARKIPLDDKKTMSLFTSVEALGI-DPEELGTPVGT 1109

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
             G+     + +  ++   RP   D +V  +   +G           D  L   Q +I  +
Sbjct: 1110 LGLPEFGTKFVRQMLIETRPTTFDELVRISGLSHG----------TDVWLNNAQDII--R 1157

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKK----IKEEMDKQK---ERFISGASKNGISKTI 745
            E +  + ++++        ++ + M KK    I E + K K   +  I    K+G+    
Sbjct: 1158 EGIATLKEVIAARDDIMLYLISKGMDKKLSFKIMENVRKGKGVTQEEIEEMKKHGVP--- 1214

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV------ 799
              + F    +   Y F K+HA AY +++++ A+ K +YP  F A   T+  D+       
Sbjct: 1215 --DWFIQSCQKIKYMFPKAHAVAYVIMAFRIAYFKVYYPEAFYATYFTVRADDFNLDIVL 1272

Query: 800  ---EKIKKFCQDARQFNIQIMPPSVNTPCV-------------------------DFKVG 831
               E IK+  ++         P   N   V                          F + 
Sbjct: 1273 GGKESIKRAIKEIEAKGNNATPKEKNLLTVLEVALEMYLRGIKFTNVDLYRSDAEKFLIT 1332

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +  +   L +++GVG   A+ I +   +  F S+EDF +R    ++++ V+E L   G L
Sbjct: 1333 EEGLLPPLNSLEGVGIQAAKAIAQERENGKFISIEDFRNRT---RVSKTVIEILKQYGCL 1389

Query: 892  D 892
            +
Sbjct: 1390 E 1390


>gi|251797402|ref|YP_003012133.1| DNA polymerase III subunit alpha [Paenibacillus sp. JDR-2]
 gi|247545028|gb|ACT02047.1| DNA polymerase III, alpha subunit [Paenibacillus sp. JDR-2]
          Length = 1437

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 179/805 (22%), Positives = 300/805 (37%), Gaps = 226/805 (28%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P++AT N  +L+  D    D+ +   H        +    PD +L+   EM+  F+ L E
Sbjct: 727  PVIATGNVHYLNPRDKLYRDIAI---HGITGFSPLKDLRKPDAHLRTTEEMLREFAFLGE 783

Query: 270  A------LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            A      ++NTVE++ R              F +K    I +  E E+RN          
Sbjct: 784  ARAYEVVVKNTVELSNRFE--------PFEMFPDKLFTPIIEGAEEEIRNTCYD------ 829

Query: 324  AQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                 AK  +  D  Q    RL+ EL  I +  FS  +LI    ++ +  +   VG  RG
Sbjct: 830  ----TAKSMYGDDLPQVVIDRLEKELVPIIKFGFSANYLISEKLVKKSNADGYLVG-SRG 884

Query: 380  SGAGSVTAYALTITDIDPLRFSLL------------------------------------ 403
            S   SV A  L I++++PL    L                                    
Sbjct: 885  SVGSSVVATFLGISEVNPLPAHYLCKNSECRHSEWFLDGSVPSGFDLPDKNCPNCNLPMK 944

Query: 404  -------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
                   FE FL      +PD D++F  + +     + +  +G + V +  T G++  K 
Sbjct: 945  GEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPTAHNFTKIMFGDKCVFRAGTIGTVAEK- 1003

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR-FREARLADPSVDRLLEIS 515
                 G      Y++                      D S+ +R A L+         ++
Sbjct: 1004 ----TGYGFARKYAE----------------------DHSKTWRSAELS--------RLA 1029

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF-----NMKWIE------ 564
              + G+ R    H  GIV+        VP Y +V    PV QF     N +W        
Sbjct: 1030 SGVTGVKRSTGQHPGGIVV--------VPNYMEVEDITPV-QFPADDVNAEWKTTHFDYH 1080

Query: 565  --KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL---------- 612
              +A L+K D LG    T+++     + Q    VD + IP +D +   +           
Sbjct: 1081 AFEANLLKLDILGHDDPTMMR-----MLQDLTGVDPTTIPMNDPKVMSMFNSTKALEVSP 1135

Query: 613  ----TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
                T   T G+ ++ +  +RQ L+  QP    D++ +  L        + + N ++  K
Sbjct: 1136 EKIRTPVATYGVPEMGTKFVRQMLQETQPSSFADLLQISGLSHG---TGVWLGNAQELIK 1192

Query: 669  EKIVSIHPLI----DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +   +I  +I    D ML      +IY+      A + +G +    + +R+  GK +  E
Sbjct: 1193 KGTCNIKTVIGCRDDIML-----YLIYK------AGMDAGLAFKITESVRK--GKGLTPE 1239

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
              ++ +R           K  A  I   L    +Y F K+HAAAY + + +TA+ K +YP
Sbjct: 1240 WIEEMKR----------CKVPAWYIDSCLR--IEYMFPKAHAAAYVISAVRTAYFKLYYP 1287

Query: 785  VEFLAASMTLEMDNVEKIKKFCQ--DARQ----------FN--------IQIMPPSVNTP 824
            + + A   ++  ++ + ++  CQ  DA Q          FN        I ++  ++   
Sbjct: 1288 IHYYATYFSVRAEDFD-LELLCQGYDAIQKKIIEIEDKGFNATTKEKNSISLLEMALEMT 1346

Query: 825  CVDFKVGDNRIYYS---------------LAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
               F      +Y S                +AI G+G   AR+I  A     F S+EDF 
Sbjct: 1347 ARGFSFKPIDLYRSDATKFIVDGETLIPPFSAIGGIGENAARNIAAAKDAGEFLSIEDFQ 1406

Query: 870  SRVDSKKLNRRVLESLVFAGALDCF 894
             R    K ++ ++E L   G   CF
Sbjct: 1407 QR---SKASKTIIEVLTGMG---CF 1425


>gi|306820890|ref|ZP_07454510.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
            43715]
 gi|304551004|gb|EFM38975.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
            43715]
          Length = 1398

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 170/831 (20%), Positives = 306/831 (36%), Gaps = 210/831 (25%)

Query: 171  LLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            + T   +  D    N++  +  ++     + Q+A      ++A++NS +L E++     +
Sbjct: 655  VTTMNSMINDESVRNVEEIKNINK----TIYQIATKMGKTVIASSNSHYLDEDE----KL 706

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
               +  S++  + + P    D YL+   EM+  FS L E       +ENT  IA     +
Sbjct: 707  FRKILKSSIKKRDESP--DNDLYLRTTDEMLQEFSYLGEDVARKIVVENTNAIANTIEKV 764

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            + V     P  IE          + ELRN      + R+    +      +   +RL+ E
Sbjct: 765  IPVPDGTFPPVIEGS--------DEELRNMCYEKAK-RIYSDNLP-----EIVEKRLEKE 810

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------ 398
            LN I    ++  ++I    +  +  +   VG  RGS   S+ AY   IT+++ L      
Sbjct: 811  LNSIINNGYAVMYIIAQKLVTKSLSDGYLVG-SRGSVGSSLAAYMSDITEVNALPPHYIC 869

Query: 399  -----------------------------------RFSLLFERFLNPDRMSMPDFDIDFC 423
                                                F + FE FL  +    PD D++F 
Sbjct: 870  PKCKSSEFILDGSYPTGADMPDKDCPVCGERYHKDGFDIPFETFLGFEGDKEPDIDLNFA 929

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + +    +Y Q  +G + V +  T G++  K A   +                      
Sbjct: 930  GEYQPNAHKYTQKLFGEDYVYRAGTIGTVAEKTAYGFI---------------------- 967

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                         ++ E +    S  ++  + +K  G+ R    H  G+++        V
Sbjct: 968  ------------KKYEELKSEKFSSAQIEVLQKKCTGIKRTTGQHPGGVMV--------V 1007

Query: 544  PMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            P Y+D+    P+             T F+   I    ++K D LG    +++++  +F  
Sbjct: 1008 PDYKDIYDFSPIQYPANDKKSGTLTTHFDYHSI-SGRILKLDILGHDGPSIIRQLEEFTG 1066

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQ 636
                  D + IP DD  T  L                  GTLGI +  +  +RQ L   +
Sbjct: 1067 -----TDATKIPLDDKLTMGLFANTDSLGCKLDEIDCLTGTLGIPEFGTKFVRQMLIDTK 1121

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            P  + +++ +  L       N+ V N +   +  + S        LKE   VI  ++ +M
Sbjct: 1122 PSTLGELVRISGLSHGT---NVWVNNAQDLVRGNVAS--------LKE---VICTRDDIM 1167

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
                +L G        L      KI E +  +K + ++   +N + +      +    K 
Sbjct: 1168 NYL-ILKG--------LNPKTSFKIMENV--RKGKGLTEEYENDMKENKVPQWYIDSCKK 1216

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE----------------MDNVE 800
             +Y F K+HAAAY ++S++ A+ K HYP  F A   T +                ++ + 
Sbjct: 1217 IEYMFPKAHAAAYVMLSFRIAYYKIHYPEAFYATYFTTKVFDFDVNIISKGQDAILEKIR 1276

Query: 801  KIKKFCQDA-----------------RQFNIQIMPPSV-NTPCVDFKVGDNR-IYYSLAA 841
            +I     DA                  + NI++    + N+    FK+ +N  I     A
Sbjct: 1277 EINSLGNDASVKEKGLLTVLEVAFEMSKRNIKLEKVDLYNSDAKKFKLSENNTIIPPFLA 1336

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            I G+G   A  I + + +  F S+ED   R  + K    V+E L  +G +D
Sbjct: 1337 IPGLGDVVAEKIYQEAKESEFISVEDLKERTGASK---TVIEELTNSGCID 1384



 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            V L VH++ S ++G  S+  ++ +I + +  A+AITD   + +  +  + A   GI+PI
Sbjct: 296 MVELHVHTNMSQMDGLTSVKELMSRIKSYEHSAVAITDHAVVQAFPDVMEVAEKQGIKPI 355

Query: 71  IGCQLDI--DMQDNLKMTNQGK 90
            GC+  +  D Q+++K+    K
Sbjct: 356 YGCEFYVVEDTQEHIKVRKTAK 377


>gi|229544431|ref|ZP_04433489.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
 gi|229324916|gb|EEN90593.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
          Length = 1442

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 194/910 (21%), Positives = 330/910 (36%), Gaps = 211/910 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             LLV T EG + L +L+S  ++ D   +  RI  S LQ+   EG+++ +G   G +    
Sbjct: 620  TLLVRTQEGLKNLFKLISLSHI-DYFYRVPRIPRSELQKY-REGILVGSGCDKGEVFEGM 677

Query: 160  FFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYRE--SQVVQLAYTHELPLV 212
                    E+  R   + ++    +Y  L   +  R      E  +++V+L     LP+V
Sbjct: 678  MQKDPAEVEEIARFYDYLEVHPKEVYAPLIDQELIRDEKALEEIITKIVRLGEKLNLPVV 737

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--A 270
            AT N  +L+ ED     +L++         + R    PD + +   EM++ FS L E  A
Sbjct: 738  ATGNVHYLNPEDKIYRKILISSQGGANPLNRHR---LPDVHFRTTDEMLACFSFLGEEKA 794

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE--EENELRNKAVAGLEVRLAQGAI 328
             E  V+   + + +++   P+       + +  ++E  E++  R K + G  +       
Sbjct: 795  KEIVVDNTNKIAGLIEDVKPVKDELYTPKIEGAEEEIREQSYKRAKMIYGDPL------- 847

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                  +    RL+ EL  I    F+  +LI    ++ +  +   VG  RGS   S+ A 
Sbjct: 848  -----PEIVEARLEKELKSIIGHGFAVIYLIAHKLVKKSLNDGYLVG-SRGSVGSSLVAT 901

Query: 389  ALTITDIDPL-----------------------------------------RFSLLFERF 407
               IT+++PL                                            + FE F
Sbjct: 902  MTEITEVNPLPPHYVCPNCKHSEFFNDGSVGSGFDLPDKNCPACGAKYKKDGHDIPFETF 961

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            L      +PD D++F  D +     Y +  +G E V +  T G++  K A   V      
Sbjct: 962  LGFKGDKVPDIDLNFSGDYQPRAHAYTKVLFGEEYVYRAGTIGTVAEKTAYGYV-----K 1016

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
             Y+Q   L                      FR A      +DRL+   Q   G+ R    
Sbjct: 1017 GYAQDHNLT---------------------FRSAE-----IDRLV---QGCTGVKRTTGQ 1047

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFL 574
            H  GI++        VP Y D+    P+             T F+   I    ++K D L
Sbjct: 1048 HPGGIIV--------VPDYMDIYDFTPIQYPADDHNSEWRTTHFDFHSIHD-NILKLDIL 1098

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY--------------HLLTTKGTLGI 620
            G    T+++   D        +D   IP DD E                 ++   GTLGI
Sbjct: 1099 GHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPEPLGVTEEQIMCKTGTLGI 1153

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +RQ LE  +P    +++ +  L         V   N +   +      P +  
Sbjct: 1154 PEFGTKFVRQMLEDTKPTTFAELVQISGLSH----GTDVWLGNAQELIQNGTCTLPEVIG 1209

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
               +    +IYQ     +A     + + E+    + +  +++EEM KQ            
Sbjct: 1210 CRDDIMVYLIYQGLEPSLA-----FKIMESVRKGKGLTPEMEEEMIKQN----------- 1253

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE----- 795
                   N +    K   Y F K+HA AY +++ + A+ K ++P+ + A   T+      
Sbjct: 1254 -----VPNWYIESCKKIKYMFPKAHATAYVLMAVRIAYFKVYHPLIYYATYFTVRAEDFD 1308

Query: 796  ----------------------MDNVEKIKKFC--------QDARQFNIQIMPPSVNTPC 825
                                  MD   K K             AR F  Q  P  +    
Sbjct: 1309 LDVMIHGSNSIKAKISEINAKGMDASAKEKSLLTVLELALEMTARGFRFQ--PIDLYRSE 1366

Query: 826  VD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
             D F +  + +     AI G+GT  A +I++A  +  F S ED   R    K+++ ++E 
Sbjct: 1367 ADKFVIDGDSLIPPFNAIPGLGTNAAVNIVKAREEGEFLSKEDLQRR---GKVSKTIMEY 1423

Query: 885  LVFAGALDCF 894
            L   G L+  
Sbjct: 1424 LDGHGCLESL 1433


>gi|313895031|ref|ZP_07828588.1| DNA polymerase III, alpha subunit, Gram-positive type [Selenomonas
            sp. oral taxon 137 str. F0430]
 gi|312975926|gb|EFR41384.1| DNA polymerase III, alpha subunit, Gram-positive type [Selenomonas
            sp. oral taxon 137 str. F0430]
          Length = 1259

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 213/990 (21%), Positives = 364/990 (36%), Gaps = 234/990 (23%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
            V L  H+  S L+  +    +++  A    PA+AITD   + +  E    A A       
Sbjct: 344  VELHAHTKMSALDAVVPPKTLVETAARWGWPAVAITDHGVVQAFPEAMNTARALKKKGVD 403

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS--RMYLLDQ 124
            I+ I G +  +      + +N           I+ L     G   L +LVS   +     
Sbjct: 404  IKIIYGMEGYLIDDPAQQRSNH----------IIFLAKNKTGLYNLYKLVSISHIRFFRG 453

Query: 125  GKQSVRICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             K+  R C+  + L+E   +GLI+ +   +G + RA     S    +R+  F      + 
Sbjct: 454  SKKRGRPCVPRAILEEY-RDGLIVGSACEAGELIRAIVRGESDEELERIAAFYDFLEIQP 512

Query: 183  YVNLQRHRGYDRYR----------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
              N    +  DR+             +V +LA     PL+AT +  FL+ ED     +L 
Sbjct: 513  IHNNDFLKIDDRFPIRDDEDLRNINRKVSELADKLGKPLIATCDVHFLNPEDAVYRAMLQ 572

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCS-----FIL 285
                +      DR    P  YL+   EM++ F  L    A E  V   RR +     F+ 
Sbjct: 573  ---KANGYRDADR---QPPLYLRTTDEMLAEFDYLGAERAYECVVTNPRRIADEVEEFLP 626

Query: 286  ---QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
               +++AP++P   ++E +++   +   L  + +  +                    RLD
Sbjct: 627  IPDELYAPMVPG-ADREIEEMSYRKARRLYGENLPKI-----------------VSDRLD 668

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---- 398
             EL  I +  FS  ++I    ++ +  +   VG  RGS   S  A  + +T+++PL    
Sbjct: 669  LELKPILKHGFSALYIIAQRLVKKSNDDGYLVG-SRGSVGSSFVATMIGVTEVNPLPPHY 727

Query: 399  --------RF-----------------------------SLLFERFLNPDRMSMPDFDID 421
                    +F                             ++ F  FL  D   +PD D++
Sbjct: 728  RCKHCQYNKFITDGSVGSGFDLPSMDCPVCGTPLIKDGHNIPFAVFLGFDGDKVPDIDLN 787

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  D +    +Y +  +G   V +  T   LQ K A    G A+                
Sbjct: 788  FSGDYQPVAHKYTEVLFGKMNVFRAGTIAGLQDKNAY---GYAMHY-------------- 830

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS- 540
                        +D   ++ R   P ++ ++   +   G+      HA GI++  R +  
Sbjct: 831  -----------YEDMGVQKGR---PYIEHMM---RGCMGVKATTGQHAGGIMVVPRDMDV 873

Query: 541  -QLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
                P+ R   ++ SD   T F+   I +  L+K D LG    T++ K L+ L  R    
Sbjct: 874  HYFTPIQRPANNMESDTLTTHFDYHSISER-LVKLDILGHDDPTVI-KMLEELTHR---- 927

Query: 597  DLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIED 642
            D   IPFDD  T  + T+               GT GI +  +S  ++ ++   PDC  D
Sbjct: 928  DPETIPFDDPATMSIFTSTDALGITPEELGANMGTYGIPEFRTSFTQKMIDDSNPDCFAD 987

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++  +S +  G   N+ + N +            LI       +  I  ++ +M      
Sbjct: 988  LVR-ISGFSHG--TNVWLGNAQD-----------LIKAGTSTLKDAISARDDIMN----- 1028

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD---Y 759
              Y +     +   +  K  E + K K     G + + + K  A  I E   +      Y
Sbjct: 1029 --YLMQNG--IDPLLSFKTMENVRKGK-----GIAPDVVEKLYAGGIPEWYVESCQKIKY 1079

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIKKFC 806
             F ++HA AY ++ Y+ A+ K HYP+ + AA  ++  D  +              I    
Sbjct: 1080 LFPRAHATAYVMMGYRIAFCKVHYPLAYYAAYFSIRADEFDANIIAKGRDAIKAAIDALN 1139

Query: 807  QDARQFNIQIMPPSVNTPCV----------DFKVGDNRIYYS---------------LAA 841
             +AR+   ++     +T  V           F      IY S               L A
Sbjct: 1140 AEAREHRGKLDNKKQDTLIVLQLAWEMYLRGFACEPVDIYTSNAETFILHEKSLLPPLTA 1199

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            + G+G   A+ I+EA  D  F S+ED  +R
Sbjct: 1200 LPGMGQKAAQAIVEARKDGVFISIEDLATR 1229


>gi|2956673|emb|CAA04471.1| DNA-polymeraseIII [Rhodobacter capsulatus]
          Length = 105

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/107 (43%), Positives = 67/107 (62%), Gaps = 5/107 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P F+HL+VH+ YSLLEGA+ +  ++    A   PAIA+TDTN +F+ALEFS  A  AG+Q
Sbjct: 4   PRFIHLRVHTEYSLLEGAVPVKKLIKLCDAMNMPAIAVTDTNAMFAALEFSVLAQGAGLQ 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
           PI+GCQ+ +  +    +   G+ P    P +VLL     GY  L++L
Sbjct: 64  PIVGCQVSVAYE----VAAPGEKPRLPAP-VVLLAQNEAGYMNLMKL 105


>gi|222151098|ref|YP_002560252.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
 gi|222120221|dbj|BAH17556.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
          Length = 1434

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 189/931 (20%), Positives = 359/931 (38%), Gaps = 224/931 (24%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            +LK++N+          + L+V   +G + L ++VS   ++    ++ RI  S L E   
Sbjct: 593  DLKLSNKDAYKRARPMHVTLIVQNQKGLKNLFKIVSDS-MVKYFYRTPRIPRSLLNEY-R 650

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ 199
            EG+++ +   +G +  A      +  EK  R   + ++    LY +L      D  R+++
Sbjct: 651  EGILVGSACDNGEVFTAVMQKDQEEVEKIARYYDYLEVQPKALYQHLLDK---DLIRDNE 707

Query: 200  VVQLAYTH--------ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             ++  Y          ++P++AT N  +L+E D  A ++L+A      +++    +  PD
Sbjct: 708  TMEEIYQRILDVGEKLDIPVLATGNVHYLNEHDKIAREILIASNPGNPLNR----QTLPD 763

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + +   EM+  F  L E       ++NT E+A R   ++ +   +    I+   ++I+ 
Sbjct: 764  AHFRTTDEMLDAFHFLGEEKAYEIVIKNTNELADRIETVIPIQDKLFTPNIDGANEEIR- 822

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E +  R +++ G E  L +  +A          RL+ EL+ I    F+  +LI    ++
Sbjct: 823  -EMSYARARSIYGEE--LPEIVVA----------RLEKELDSIIGNGFAVIYLISQKLVK 869

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------RFSL- 402
             +  +   VG  RGS   S  A    IT+++PL                       F L 
Sbjct: 870  KSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPKCNSSHFFEDGSVASGFDLP 928

Query: 403  ------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                               FE FL      +PD D++F  + +     Y +  +G ++V 
Sbjct: 929  DKSCPSCDVPYIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPIAHNYTKVLFGEDKVF 988

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++  K A   V   +               ND             +  R A   
Sbjct: 989  RAGTIGTVAEKTAFGYVKGYM---------------NDSG-----------THKRGAE-- 1020

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV--------- 555
               +DRL+   +   G+ R    H  GI++        VP Y D+    P+         
Sbjct: 1021 ---IDRLV---KSCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPADDQSS 1066

Query: 556  ----TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
                T F+   I    L+K D LG    T+++     + Q    +D   IP DD ET  +
Sbjct: 1067 AWKTTHFDFHSIHD-NLLKLDILGHDDPTMIR-----MLQDLSGMDPKTIPVDDKETMKI 1120

Query: 612  LTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
             ++               GTLG+ +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1121 FSSPESLGVTEEDILCKTGTLGVPEFGTGFVRQMLEDTKPSSFSELVQISGLSHGTDV-- 1178

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
                    N +E       LI     +   VI  ++ +M +  + +G        L  ++
Sbjct: 1179 -----WLGNAQE-------LIKSGTCDLSSVIGCRDDIM-VYLMYAG--------LEPSL 1217

Query: 718  GKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              KI E + K K   E F +   +N + +    +      K   Y F K+HAAAY +++ 
Sbjct: 1218 AFKIMESVRKGKGLSEEFEAAMRENNVPEWYLDS-----CKKIKYMFPKAHAAAYVLMAV 1272

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD----------------- 808
            + A+ K H+P+ + A+  T+   + +          IK   +D                 
Sbjct: 1273 RIAYFKVHHPLYYYASYFTVRASDFDLLTMTKDKHTIKATVKDYYSRFHDLGKKEKDVLT 1332

Query: 809  -------ARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                     Q   ++ P S+  +   +F +  + +     ++ G+G   A+ I+ A  + 
Sbjct: 1333 VLEITNEMAQRGFKVQPISLEKSTAFEFIIEGDTLIPPFISVPGLGENVAKRIVAARDEG 1392

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            PF S E+   +     +++++++ L   G+L
Sbjct: 1393 PFLSKEELNKKA---GVSQKIIDYLDELGSL 1420


>gi|121998458|ref|YP_001003245.1| DNA polymerase III subunit alpha-like protein [Halorhodospira
           halophila SL1]
 gi|121589863|gb|ABM62443.1| DNA polymerase III alpha subunit-like protein [Halorhodospira
           halophila SL1]
          Length = 590

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 141/340 (41%), Gaps = 29/340 (8%)

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG-PIDNIVV 660
           P+DD +T  L+    T GI  LE + +++ +    P  +E++  +V   R G P   +  
Sbjct: 193 PWDDPDTLRLIARGETAGIPLLEDAQLQERMREAAPRSLEEVTQVVVAARDGAPHGLLER 252

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM--- 717
           Y   + G  +    HP ++ +L  T  + +Y+EQV+     L G  L+EA  L + +   
Sbjct: 253 YRAARTGASRPPLPHPELEDILAPTGYIWLYREQVVAALARLLGCELAEAVGLAQRLSEE 312

Query: 718 -GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            G   + E+ +Q    I  A++  +     + +   L +      +++        +Y+ 
Sbjct: 313 GGDAHEGELSRQLGERI--AARCQLPYARGLYLLRALRQGLAQVVDRAATLVEVTEAYRQ 370

Query: 777 AWMKTHYPVEFLAASMTLEMDNV---------------------EKIKKFCQDARQFNIQ 815
           A+ K  YP  F AA +   +  V                     E + + C++A    + 
Sbjct: 371 AYYKARYPAVFQAARLNRALRRVTPRGGVRYGVGGGPDGVCPHREILIRLCKEALSDGVT 430

Query: 816 IMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
           ++PP +N     F+  D N + Y L AI  +   TA  ++       + SL D   R   
Sbjct: 431 VLPPDINRSDWGFRPLDRNTVIYGLGAIAQIDRQTADRLVLRRRGGEYRSLMDLIIRGFG 490

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
                  +E L+F+GALD FG  R  L + LD  Q    W
Sbjct: 491 GTAPAIQVEPLIFSGALDEFGRDRWHLRRELDEAQAVRGW 530


>gi|330004311|ref|ZP_08304869.1| uracil-DNA glycosylase, family 4 [Klebsiella sp. MS 92-3]
 gi|328536683|gb|EGF63005.1| uracil-DNA glycosylase, family 4 [Klebsiella sp. MS 92-3]
          Length = 386

 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 87/163 (53%), Gaps = 9/163 (5%)

Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
           + K G+S++ A  +++   KF  YGFNKSHA AY  ISYQ  ++KTH+P  F AA++T++
Sbjct: 8   SEKPGLSESKAKEVWDAFEKFGSYGFNKSHAVAYTAISYQAMYLKTHHPAAFFAAALTIQ 67

Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPC-----VDFKVGDNRIYYSLAAIKGVGTTTA 850
            D  EK +   +DA    + +MPP +N        V+ K G   +Y   +A+KG     +
Sbjct: 68  DD--EKHRAVVKDALARGVIVMPPDINLSTDRIEIVELKDGRAALYAPFSAVKGCSEKGS 125

Query: 851 RHIMEA--SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             IM A       F+S   F   ++++  N RV E+L   GA 
Sbjct: 126 LAIMRARERVGGKFESRAQFKEAIEARLCNIRVQEALDAVGAF 168


>gi|323142330|ref|ZP_08077162.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Phascolarctobacterium sp. YIT 12067]
 gi|322413214|gb|EFY04101.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Phascolarctobacterium sp. YIT 12067]
          Length = 1241

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 222/980 (22%), Positives = 383/980 (39%), Gaps = 153/980 (15%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-AAGIQPI 70
            V L  H+  S L+G   +  ++ +       A+AITD + +  A  F   A   + ++ I
Sbjct: 302  VELHCHTKMSKLDGLTPMEGLVKQAIRWGHKALAITD-HGVVQAFPFCFDAAEGSDLKLI 360

Query: 71   IGCQ--LDIDMQ--------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             G +  L  D Q        +N     +GK+   +   I++L     G + L +LV+  +
Sbjct: 361  FGMEGYLISDRQTKDDAVDTENPDAATKGKSKISS-HHIIILAKNEIGLRNLYQLVTISH 419

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-- 178
            L    K+   +    + E   EGL++ +   +G + RA    +S    + +  F      
Sbjct: 420  LRYLNKRP--LLPRAVIEEHREGLVLGSACEAGELYRAVRLGASDEELEEIAGFYDYLEI 477

Query: 179  ---GDRLYVNLQRHRGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
               G+  ++  + +   +  RE   ++ +L        VAT +  FL+ ED +   +L A
Sbjct: 478  QPTGNNQFLVRENYCTEEDLREHNRKIYELGKRLGKLTVATCDVHFLNPEDAQLRAILQA 537

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPI 291
                     KD   + P  YL    EM+  FS L E  A E  V    + + +++   P+
Sbjct: 538  GQ-----GYKD-ADLQPPLYLHTTEEMLEEFSYLGEEAAYEVVVTNTNKIADMIERIKPV 591

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLE--VRLAQGAIAKGYHAQDYRQ----RLDFEL 345
              R              ++L + ++ G E  VR    A A  ++ +   Q    RL  EL
Sbjct: 592  PDR--------------DQLYSPSIPGAEDAVRDLSYAKAHEWYGEKLPQIVEDRLKMEL 637

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF- 404
            + I    FS  + I    ++ +      VG  RGS   S  A  L IT+++ L+      
Sbjct: 638  DAIIGHGFSVLYYIAHKLVKHSIDRGYLVG-SRGSVGSSFVATMLDITEVNALKPHYRCP 696

Query: 405  -----ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN-------KYGHERVAQI-ITF-G 450
                 E F+N +  S  D     C +    ++R   N        +  ++V  I + F G
Sbjct: 697  NCRHSEFFMNNEVDSGFDLPPKDCPECGTRMLRDGHNIPFAVFLGFHGDKVPDIDLNFSG 756

Query: 451  SLQAKAALRDVGRALQMPYSQV----DRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             +          +++   Y++     D +C+      A   +  AI    ++ E++    
Sbjct: 757  GIDPDDPSAMSDQSVAHKYTEELFGRDNVCRA--GTIATIANKTAIGFIRKYYESKNLHV 814

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYR---DVRSDLPVTQFNMK 561
                +  + +   G+ R    H  GI++  R +    + PM R   D       T ++  
Sbjct: 815  HPAHVAALVEGFAGIKRTTGQHPGGIMVVPRNMDIHYITPMNRPADDKDGTTITTHYDYH 874

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV--KVDLSLIPFDDHETYHLLTTKGTLG 619
             I    L+K D LG     +L K L+   Q  V    D   IP  D ET  +     +LG
Sbjct: 875  SINDR-LVKLDILGHDDPMVL-KMLEKYLQEDVDPNFDPKKIPVGDEETMRIFQDTTSLG 932

Query: 620  IF--QLESSGMRQALEGMQPDCIEDII-ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            +   Q++S+     +    P+C    +  ++S  +P     +V  +   +G         
Sbjct: 933  VTPEQIDSAVGTFGI----PECGTKFVRQMISDVQPKKFSEVVRVSGYSHG--------- 979

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD-KQKERFISG 735
              D  L   Q +I   ++   +A+ +S    +  DV+   + K ++  +  K  E    G
Sbjct: 980  -TDVWLNNAQDLI---KEGKPVAETIS----TRDDVMTHLISKGVEPSLAFKTMEHVRKG 1031

Query: 736  -ASKNGISKTI-----AVNIFELLAKFAD---YGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             A+K G+   +     AVNI E   K  +   Y F K+HA AY +++Y+ A+ K HYP E
Sbjct: 1032 KAAKKGLEPKMLEAMRAVNIPEWYIKSCEKVQYLFPKAHAVAYVLMAYRIAYCKVHYPKE 1091

Query: 787  FLAASMTL-----EMDNVEK----IKKFCQDARQFNIQIMPPSVNTPC------------ 825
            F AA  T+     +  +V K    +K F ++  Q   +  P    T              
Sbjct: 1092 FYAAYFTVRAKDFDYTHVSKGKSYVKNFIKNVYQQGFKASPLDKTTVTYLELVNEMLERG 1151

Query: 826  -------------VDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871
                         + F V +N +   LAA+ GVG   A+ I  A   ++PF S ED   R
Sbjct: 1152 LSFDKMDLYKSDPIKFLVTENGLRPPLAALGGVGENAAKSIAAARDINRPFISQEDLRQR 1211

Query: 872  VDSKKLNRRVLESLVFAGAL 891
                 +N+ V+E L   G L
Sbjct: 1212 ---SGVNKSVIEKLADMGVL 1228


>gi|218288332|ref|ZP_03492631.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            LAA1]
 gi|218241691|gb|EED08864.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            LAA1]
          Length = 1440

 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 205/918 (22%), Positives = 329/918 (35%), Gaps = 234/918 (25%)

Query: 101  LLVSTAEGYQRLIELVS---RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            +LV   EG + L  LVS     YL     +  RI  S L     EGL++ T    G +  
Sbjct: 620  VLVRNREGLRNLYRLVSIAHTQYL----HRVPRIPKSALAR-HREGLLIGTACRQGELVE 674

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHEL------- 209
            AFF   S+     LL F        Y+ +Q    Y+   RE  V       EL       
Sbjct: 675  AFFRGKSEDEIDTLLEFYD------YLEIQPVSHYEPLVREGVVASFEQVRELLRNIVDI 728

Query: 210  ------PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                  P+VAT +  +L E D    ++ +        SQK   +  P H+ +   EM+  
Sbjct: 729  GKRLNKPVVATGDVHYLDEHDAIFREIFLQ-------SQKVDTKQPPLHF-RTTDEMLEE 780

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE--- 320
            F+ L E     V I               PR +   C+D+ K   +EL    + G E   
Sbjct: 781  FAFLGEEDARAVVIDN-------------PRRLVALCEDV-KPIPDELHTPVIDGAEDEI 826

Query: 321  VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
             RLA     + Y     +   +RL+ ELN I    ++  +LI    +  +  +   VG  
Sbjct: 827  RRLAYDKAKRIYGDPLPEIVEKRLERELNAIISHGYAVIYLIAHKLVTKSLSDGYLVG-S 885

Query: 378  RGSGAGSVTAYALTITDIDPL----------------------RFSL------------- 402
            RGS   S+ A    IT+++PL                       F L             
Sbjct: 886  RGSVGSSLVATMTDITEVNPLPPHYVCLSCHYHEFFLRGEYGSGFDLPDKACPKCGAKLH 945

Query: 403  ------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
                   FE F+  D   +PD D++F  + +    RY +  +G + V +  T   +  K 
Sbjct: 946  KDGQDIPFETFMGFDGDKVPDIDLNFSGEYQPRAHRYTEELFGKDHVFRAGTISVVAEKT 1005

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR---LADPSVDRLLE 513
            A           Y  V                        +F E R   L +  ++RL+ 
Sbjct: 1006 A-----------YGYV-----------------------RKFAEERGLVLRNAEIERLV- 1030

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY---------RDVRSDLPVTQFNMKWIE 564
              +   G+ R    H  G V+    +   V +Y          D  S+   T F+     
Sbjct: 1031 --RGCTGVKRTTGQHPGGQVV----VPHYVEIYDFTPIQYPADDTSSETLTTHFDYHSGL 1084

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL------------ 612
            +  L+K D LG    T+++   D        VD   IP DD +   L             
Sbjct: 1085 ENCLLKLDILGHDDPTVIRMLQDLTG-----VDPKSIPLDDPDVLELFRSTRPLGVTPEE 1139

Query: 613  --TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
              +T GT  I +  +  +RQ LE  +P    +++ +  L         V  NN +     
Sbjct: 1140 IRSTTGTYAIPEFGTRFVRQMLEDTRPTTFSELVRISGLSH----GTDVWLNNAQT---- 1191

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
                  LI   +     VI  ++ +M     L    L  A   +   G +  + +  + E
Sbjct: 1192 ------LIREQIATLSEVICARDDIM---LYLIQKGLDPARAFKIMEGIRKGKGVKPEDE 1242

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             ++    ++G+      + +    K   Y F K+HAAAY +++ + AW K H P+ F A 
Sbjct: 1243 AYM---REHGVP-----DWYIESGKKIKYMFPKAHAAAYVLMAVRIAWFKVHRPLAFYAT 1294

Query: 791  SMTLEMDNVEK----------IKKFCQDARQFN---------IQIMPPSVNTPCVDFKVG 831
              T+  D+ +           +KK  +   + N         + ++  ++      ++  
Sbjct: 1295 YFTVRADDFDVAVMTAGREAILKKIDEIEAKGNAASAKEKSFLTVLEVALEMVARGYRFL 1354

Query: 832  DNRIYYS-----------------LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
               +Y S                  AAI G+G T AR++ EA+    F SLED  SR   
Sbjct: 1355 PIDLYKSHATHFLIDEEARGLRPPFAAIPGIGETAARNLYEAAQHGEFLSLEDLQSRA-- 1412

Query: 875  KKLNRRVLESLVFAGALD 892
             + +R V++ L+  G LD
Sbjct: 1413 -RASRAVIDVLMELGCLD 1429


>gi|302392350|ref|YP_003828170.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium
            arabaticum DSM 5501]
 gi|302204427|gb|ADL13105.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium
            arabaticum DSM 5501]
          Length = 1440

 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 192/903 (21%), Positives = 350/903 (38%), Gaps = 203/903 (22%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            V+LV   +G + L +LVS+ ++ +   +  RI  S L +   EGLI+ +   +G + +A 
Sbjct: 619  VILVKNQQGLKNLYKLVSKAHI-ETFHRVPRILKSDLLK-RREGLIIGSACEAGQLYQAI 676

Query: 160  FFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPL 211
                 +   + +  F      + L  ++  +  ++    ++ +E   Q+ QL      P+
Sbjct: 677  VNGKDESTIREIAEFYDYLEIQPLGNNQFLIENEQVDSKEKLKEINHQIYQLGQKLNKPV 736

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL-PEA 270
            VAT +  FL  ED    ++LM        ++   P      Y +   EM+  F    PE 
Sbjct: 737  VATGDVHFLDPEDKIYREILME-GQGFDDAEDQAPL-----YYRTTEEMLDEFDYFEPEV 790

Query: 271  -----LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
                 ++N  +I      +  V   +    IE   +++++   N+ R  ++ G E+    
Sbjct: 791  AKEVVIDNPKQIVEEVEEVKPVPDGLFTPEIEGAVEEVKQMTYNKAR--SIYGDEL---- 844

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                     +    RL+ EL+ I    F+  +LI    ++ +  +   VG  RGS   S+
Sbjct: 845  --------PELVVNRLEKELDAIIGNGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSL 895

Query: 386  TAYALTITDIDPL---------RFS--------------------------------LLF 404
             A    IT+++PL         ++S                                + F
Sbjct: 896  VATMCDITEVNPLPPHYVCPKCKYSEFFTDGSVGIGVDLPDEVCPECGADLIKSGSDIPF 955

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E F+  +   +PD D++F  + + EV RY ++ +G + V +  T  ++  + A       
Sbjct: 956  EVFMGFEGDKVPDIDLNFSGEYQPEVHRYTEDLFGEDHVYRAGTISTIADRTA------- 1008

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                Y  V                 +   DD   R   L    V+RL++      G  + 
Sbjct: 1009 ----YGFV-----------------KGYMDD---RSLTLRKAEVNRLVD---GCTGARKT 1041

Query: 525  ASTHAAG--IVIGDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  G  +V  D+ +    P+ R   D  SD+  T F+   I    ++K D LG    
Sbjct: 1042 TGQHPGGQMVVPQDKEVFDFTPIQRPANDQDSDVLTTHFDYHSI-SGRILKLDILGHDDP 1100

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGIFQLES 625
            T ++   D        VD + IP D+ ET  +               TT G+LGI +  +
Sbjct: 1101 TTIRMLQDLTG-----VDPTSIPLDNPETMAIFSKVEPLGVSKEEIGTTVGSLGIPEFGT 1155

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
            S +RQ LE  +P    +++ +  L         V  NN ++          LI+    E 
Sbjct: 1156 SFVRQMLEDTRPTTFAELVRISGLSHGTD----VWLNNAQD----------LIEEGTAEL 1201

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM--GKKIKEEMDKQKERFISGASKNGISK 743
              VI  ++ +M    L  G   S+A  +   +  G+ + EE   Q++        +   K
Sbjct: 1202 SEVISVRDDIMNYL-LQKGVEASKAFWIMEDVRHGEGLTEE---QEQTMRDNDVPDWYIK 1257

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE-------- 795
            +          K   Y F K+HA AY +++++ A+ K HYP  F     T++        
Sbjct: 1258 S---------CKKIKYMFPKAHAVAYVMMAFRIAFFKVHYPEAFYNTYFTIKSADFDAQI 1308

Query: 796  --------MDNVEKIKKFCQDARQFN----------IQIMPPSVNTPCVD--------FK 829
                     + +++IK    DA Q +          I+ +   +    VD        F+
Sbjct: 1309 VLQGKDFIKEKIQEIKAKGNDATQKDKNTLTVLEIVIEALVRGIEFVSVDLYDSEAEKFQ 1368

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            + +N +   L  ++G+G + A  I++A  +  F S+ED  +R     +++ V+E +   G
Sbjct: 1369 ITNNGLRPPLITLQGLGKSAAESIIQAREEGEFSSIEDLKNRT---SISKTVIEVMKEHG 1425

Query: 890  ALD 892
             LD
Sbjct: 1426 CLD 1428


>gi|309389228|gb|ADO77108.1| DNA polymerase III catalytic subunit, PolC type [Halanaerobium
            praevalens DSM 2228]
          Length = 1404

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 185/904 (20%), Positives = 337/904 (37%), Gaps = 207/904 (22%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            V+L    +G + L +L+S  +L +  K+  RI  S L +   EGLI+ +   +G I +AF
Sbjct: 584  VILAENKKGLKNLYQLISISHLNNFYKKP-RILKSVLLQ-HREGLIIGSACEAGQIYKAF 641

Query: 160  FFNSSQVAEKR---LLTFKKL--FGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLV 212
              N  +   K+   L  + +L   G+  ++   +    D  +E   ++ +L    + P+V
Sbjct: 642  VNNKPRSEIKKIAKLYDYLELQPLGNNQFLIPAKVNSKDDLKEINKKIYKLGQELDKPVV 701

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--- 269
            AT ++ FL  +D    ++L          Q+      P  Y +  +EM+S F+   +   
Sbjct: 702  ATTDAHFLDPKDSIFREILQTGQGFNDADQQ------PPIYYRTTNEMLSEFAYFGKKIA 755

Query: 270  ---ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
                ++N  +IA R   I     PI       E +  + E      N+A      +L Q 
Sbjct: 756  KEIVIDNPNQIADRIEKI----KPIPDGLFTPEIEGAEAEIREMSYNRAHKFYGEKLPQL 811

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
             I           RL+ EL+ I    F+  +LI    ++ + ++   VG  RGS   S  
Sbjct: 812  VI----------DRLEKELSSIIENGFAVIYLIAHKLVKKSLEDGYLVG-SRGSVGSSFV 860

Query: 387  AYALTITDIDPL-----------------------------------------RFSLLFE 405
            A    IT+++PL                                          F + FE
Sbjct: 861  ATMTEITEVNPLPPHYRCPKCSKHEFITDGSIGTGVDLPDKKCPDCGTEYIKDGFDIPFE 920

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
             F+      +PD D++F  + + ++ +Y +  +G + V +  T  ++  + A   V   L
Sbjct: 921  VFMGFKGDKVPDIDLNFSGEYQGKIHKYTEEFFGRDYVYKAGTISTIADRTAFGFVKNYL 980

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
                                         D +  + + A+  +DRL+       G+ R  
Sbjct: 981  -----------------------------DEKGMDVKRAE--IDRLV---AGCTGVRRTT 1006

Query: 526  STHAAGIVIGDRPLS--QLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              H  G++I  +  S     P+     D  +D+  T F+   I    ++K D LG    T
Sbjct: 1007 GQHPGGLMIVPKSNSIFDFSPIQHPANDQDTDIRTTHFDYHSI-SGRILKLDLLGHDDPT 1065

Query: 581  LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESS 626
             L+     L Q    ++   IP DD +T  + ++               GTLGI +  +S
Sbjct: 1066 SLR-----LLQDMTGIEPKDIPLDDPDTMSIFSSTDILEVEADLLGTDIGTLGIPEFGTS 1120

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR----KNGKEKIVSIHPLIDPML 682
             ++Q L   +P    +++ +  L         V  NN     +NGK ++  +  + D ++
Sbjct: 1121 FVQQMLRDTRPTTFAELVRISGLSHGTD----VWINNAQSLIRNGKAELAEVISVRDDIM 1176

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
                   +   Q   I + +           R+  G   +EE                + 
Sbjct: 1177 NYLLQKGVEPSQAFWIMEHV-----------RKGKGLTAEEE--------------EAMR 1211

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE------- 795
            +    N +    K   Y F K+HAAAY  ++Y+ A+ K HYP  F  A  +++       
Sbjct: 1212 ENQVPNWYIDSCKKIKYMFPKAHAAAYVTMAYRIAYFKVHYPAAFYTAYFSIKAGDFDAQ 1271

Query: 796  ---------MDNVEKIKKFCQD-----------------ARQFNIQIMPPSVNTPCVD-- 827
                     +D +E+++    D                 A    I+ MP  +     +  
Sbjct: 1272 LACNGRQVVIDKIEELEALGNDMTAKESGTLTVLRIVLEAMMRGIEFMPVDIYESAANHF 1331

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             K  +N++   L +++G+G + A  ++       F S+E+  +R     L   V+E L  
Sbjct: 1332 IKKEENKLLAPLISLQGLGGSAAESVVVERQKSDFTSIEELSNRT---SLTSTVIEILRE 1388

Query: 888  AGAL 891
             G+L
Sbjct: 1389 HGSL 1392


>gi|237737108|ref|ZP_04567589.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817]
 gi|229420970|gb|EEO36017.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817]
          Length = 1450

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 186/919 (20%), Positives = 349/919 (37%), Gaps = 212/919 (23%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            ++++LV    G + + +LVS  ++   G +  RI  S L++   EGLI+   GSS  +  
Sbjct: 613  NVMVLVQNLAGLKNMYKLVSEAHIDYYGNKKPRILKSHLEKY-REGLIV---GSSMTV-- 666

Query: 158  AFFFNSSQVAEKRLL----TFKKLFGDRLYVNLQRHRGYDRYRESQ-------------- 199
              F N  ++ +  +     + +K  G   Y+ L     Y    E                
Sbjct: 667  -HFSNDGELTDYYMRYDYESIEKNIGFYDYIELLPKGAYSEIYEDDGTGSISSFKAIEDM 725

Query: 200  ---VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKN 256
                  LA    + + A++N  +L EEDY+   +L+    S  V + ++ ++    Y + 
Sbjct: 726  NRYFYNLAKEKGILVTASSNVHYLDEEDYKIRSILLY--GSGNVFRANQYKIDNKFYFRT 783

Query: 257  RSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              EM+  FS L E       + NT  IA +   I  V     P  I+   ++I KE   E
Sbjct: 784  TDEMLEEFSYLGEDIAREIVVTNTNLIADKIEKIKPVPDGFYPPKIDN-AENIVKEMTYE 842

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
               KA      R+    + +  +A     R++ ELN I    FS  +L     ++ +  +
Sbjct: 843  ---KAY-----RIYGNPLPEIVNA-----RIERELNAIIGNGFSVLYLSAQKLVKKSLDS 889

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------- 399
               VG  RGS   S+ A+ + IT+++ L                                
Sbjct: 890  GYLVG-SRGSVGSSLVAFMMGITEVNALYPHYICTNPECKNSEFIEREGVGIDLPEKNCP 948

Query: 400  ----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                      +S+ FE F+  +   +PD D++F  + + E+ RY +  +G E V +  T 
Sbjct: 949  KCGKPYKRDGYSIPFEVFMGFNGDKVPDIDLNFSGEYQSEIHRYCEQLFGKENVFKAGTI 1008

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
             +L  K A   V +                                  F E  + +   +
Sbjct: 1009 STLAEKNAEGYVKKY---------------------------------FEEHDMKNNKAE 1035

Query: 510  RLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIE 564
             +L +++K EG  +    H  G+V+   D  + +  P+ +   D ++D   T ++   ++
Sbjct: 1036 -ILRLAKKCEGAKKTTGQHPGGMVVVPHDHTIYEFCPVQKPANDEKNDSITTHYDYHVMD 1094

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------- 615
            +  L+K D LG    T ++     L Q    VD+  IP  D +T  + ++          
Sbjct: 1095 EQ-LVKLDILGHDDPTTIK-----LLQEYTGVDIYSIPLSDPDTLKIFSSTESLGVTPEQ 1148

Query: 616  -----GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
                 GT G+ +  +  +RQ L    P    +++ +  L         V  NN +     
Sbjct: 1149 INSVVGTFGVPEFGTPFVRQMLIDTMPKTFAELVRISGLSHGTD----VWLNNAQE---- 1200

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK-QK 729
                       +++ Q  +    QV+ +   +  Y + +   L +    KI E + K Q 
Sbjct: 1201 ----------FIRQKQATL---SQVITVRDDIMNYLIDQG--LEKGTAFKIMEFVRKGQP 1245

Query: 730  ERFISG--ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +   G  A  + + +      +    +   Y F K HA AY +++ + A+ K HYP+ F
Sbjct: 1246 TKNPEGWKAYSDLMKEHNVAEWYIESCRRIKYMFPKGHAVAYVMMAMRIAYFKVHYPLAF 1305

Query: 788  LAASMTLEMDNVE-----------------------KIKK-----FCQDARQF---NIQI 816
             AA ++ + ++ +                        +KK      C+   +     ++ 
Sbjct: 1306 YAAYLSRKAEDFDYEIMGKPESAKSHLEILSKEPKLDVKKKAEMAICEIVVEMYARGLEF 1365

Query: 817  MPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            +P  +  +  V F + D +I   L A+ G+G     +I++   +  F S ED   R    
Sbjct: 1366 LPIDIYKSGGVKFTIEDGKIRVPLIALAGLGGAVIDNIIKEREESKFLSFEDLKRRT--- 1422

Query: 876  KLNRRVLESLVFAGALDCF 894
            K+++ +++ L    A+D  
Sbjct: 1423 KVSQTIIDKLKMIKAIDSL 1441


>gi|160947401|ref|ZP_02094568.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
 gi|158446535|gb|EDP23530.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
          Length = 1431

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 201/922 (21%), Positives = 348/922 (37%), Gaps = 211/922 (22%)

Query: 87   NQGKTPFPTVPSI----VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
            N  +T +P   +I    ++ V   E      ++VS   L+   ++      S L+E   E
Sbjct: 591  NNIETKWPVAKNISYNSIIYVKKMEALSGFYKMVSEG-LMKYFRRVAGFPKSRLKEY-RE 648

Query: 143  GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--HRG----YDRYR 196
            GL++ +G   G + RAF    S+     +  F   F  +   NL+    RG     D  +
Sbjct: 649  GLLIGSGNWDGELFRAFIEEKSEEEILEIAKFYDFFEIQPISNLKHLFFRGKVLSIDDLK 708

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
            E   ++ +L    +  +VAT N  +L + DY   +V++       + ++         Y 
Sbjct: 709  EINKKIYELGKKLDKLVVATGNVKYLDKNDYIFRNVILYGQGRKNLEKEGS------FYF 762

Query: 255  KNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPI----LPRFIEKECDDIQKEEE 308
            +   EM   FS L   EA E  V+       +L+   PI     P FIE   ++++K   
Sbjct: 763  RTTDEMFDEFSYLGKDEAYEVVVKNTNIFKDMLEDILPIPNGTYPPFIEGSDEELRKICY 822

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            +  + K++ G  +             +    RL+ EL+ I +  ++  ++I    +  + 
Sbjct: 823  D--KAKSIYGENL------------PKIVEDRLERELSSIIKNGYAVLYIIAQKLVWRSN 868

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFS------------------ 401
             +   VG  RGS   S  A    IT+++PL         ++S                  
Sbjct: 869  DDGYLVG-SRGSVGSSFAATMAGITEVNPLIPHYICPKCKYSEFHEEYSGQSGVDMPDKE 927

Query: 402  --------------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                          + FE FL  D    PD D++F  + +    +Y +  +G ++V +  
Sbjct: 928  CPHCKINMSKEGHDIPFEVFLGFDGDKEPDIDLNFAGEYQSTCHKYTEELFGSDKVYRAG 987

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G++  K A   V + ++                                +E  L   +
Sbjct: 988  TIGTISDKTAFGYVKKFVEE-------------------------------KEISLTAGN 1016

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKW 562
            + R +   +K+ G+ R +  H  G++I   ++ +    P+     D  S+   T F+ K 
Sbjct: 1017 IRRYV---RKIVGVKRTSGQHPGGVMIVPHNKEIYDFTPIQYPADDPTSETKTTHFSYKS 1073

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK------- 615
            I    ++K D LG    T+++   D        VD   IP DD ET ++  +        
Sbjct: 1074 I-SGRILKLDLLGHDVPTIIKHLGDLTG-----VDPLNIPMDDKETLNIFYSTDSLKLMD 1127

Query: 616  -------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
                   GTLGI +  ++ +RQ L   +P  + ++I +  L     +          N +
Sbjct: 1128 NKYKDSVGTLGIPEYGTNFVRQMLLDTRPKTLTELIRISGLSHGTDV-------WLGNAQ 1180

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEM 725
            E I    PL      ET   I  ++ +M       L +  S    + +R+  GK + EE 
Sbjct: 1181 ELIKKGIPL-----NET---ICTRDDIMTFLIFKGLENKRSFKIMETVRK--GKSLDEET 1230

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +       S   +NGI +    +      K   Y F K+HA AY ++SY+ A+ K HYP 
Sbjct: 1231 E-------SYMRENGIPEWYIES-----CKKIKYLFPKAHAVAYVMMSYRIAYFKVHYPE 1278

Query: 786  EFLAASMTLEMDN-------------------VEKIKKFCQDARQFNIQIMPPS------ 820
             F A   T ++DN                   +E++ K      Q    I+  +      
Sbjct: 1279 AFYATYFTTKIDNYPGNLIFKGLTAIQTKMKEIEELGKLASQKEQDVYDILEVAEEMYLR 1338

Query: 821  -VNTPCVDFKV---------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
             +    VD +          G+ +I     A+  V    +  I E     PF S+EDF  
Sbjct: 1339 GIVASKVDLERSDSSRFLIDGNGKILPPFRALDFVSDVNSVSIYEEVRKLPFISIEDFQE 1398

Query: 871  RVDSKKLNRRVLESLVFAGALD 892
            R    K+N+  LESL   G L+
Sbjct: 1399 RT---KINKNALESLREHGVLN 1417


>gi|296132882|ref|YP_003640129.1| DNA polymerase III, alpha subunit [Thermincola sp. JR]
 gi|296031460|gb|ADG82228.1| DNA polymerase III, alpha subunit [Thermincola potens JR]
          Length = 1442

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 195/906 (21%), Positives = 336/906 (37%), Gaps = 209/906 (23%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +V+LV   +G + L +LV+  +L    +   RI  S L +   EGLI+ +   +G + RA
Sbjct: 621  VVILVKNQQGLKNLYQLVTDSHLKYYHRHP-RIPKSELIK-KREGLIIGSACEAGELFRA 678

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
               N+ Q   + +  F      + +  +   +   R   YD  RE   ++ +L      P
Sbjct: 679  LLDNAPQERLEEIAGFYDYLEIQPVGNNEFLLREGRVNSYDELRELNRKIFELGRKIGRP 738

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL--- 267
            +VAT +  FL  ED     VL+A         +D     P  YLK   EM+  FS L   
Sbjct: 739  VVATGDVHFLDPEDAVYRAVLLAGK-----GFEDADNQAP-LYLKTTEEMLEEFSYLGLE 792

Query: 268  ---PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
                  +EN V IA     I  +     P  IE   + I               +E+ ++
Sbjct: 793  NAREVVIENPVRIAESIDSIKPMPDDFFPPKIEGAEEQI---------------IELTIS 837

Query: 325  QGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                  G    D  +QR+D ELN I    F+  +LI    ++ + ++   VG  RGS   
Sbjct: 838  TAKKIYGDPLPDIVQQRVDKELNSIITNGFAVLYLIAHKLVKKSNEDGYLVG-SRGSVGS 896

Query: 384  SVTAYALTITDIDPL---------RFS--------------------------------L 402
            S  A    IT+++PL         ++S                                +
Sbjct: 897  SFVATMTGITEVNPLPPHYICRNCKYSEFVTDGSYGSGADMPDKDCPVCGKPLKKDGHDI 956

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL      +PD D++F  + +    ++ +  +G   V +  T G++  K A   V 
Sbjct: 957  PFEVFLGFKGDKVPDIDLNFSGEYQPRAHKFTEELFGKGYVFRAGTTGTIADKTAFGFVK 1016

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                  Y +  ++ K                     R A +          ++    G+ 
Sbjct: 1017 N-----YLEERKIIK---------------------RNAEIT--------RLASGCTGVK 1042

Query: 523  RHASTHAAGIVIGDRPLS--QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H  G+++  R +      P+     D  S +  T F+   I    ++K D LG  
Sbjct: 1043 RTTGQHPGGVMVVPRDMDVHDFTPLQFPADDKTSGVITTHFDYHSI-SGRIVKLDILGHD 1101

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQL 623
              T+++   D        VD   IP D+ +   L +                GT GI + 
Sbjct: 1102 DPTVIKMLEDLTG-----VDAKTIPLDEPKVLQLFSGTESLGVTPDDIRSNVGTYGIPEF 1156

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +RQ LE  +P    +++  +S +  G      V+ N  N ++ I S    +   + 
Sbjct: 1157 GTKFVRQMLEDTRPKTFSELVR-ISGFSHG----TDVWLN--NAQDLIRSGTCTLSEAIS 1209

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE----MDKQKERFISGASKN 739
                +++Y   + +  +    + + E   +R+  G K ++E     +   E +I    K 
Sbjct: 1210 TRDDIMVY--LIYKGLEPSRAFKIMEG--VRKGKGVKPEDEEYMRENNVPEWYIDSCKK- 1264

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
                               Y F K+HA AY +++++ A+ K +YP  F A   T+  D  
Sbjct: 1265 -----------------IKYMFPKAHAVAYVMMAFRIAYFKVYYPEAFYATYFTVRADEF 1307

Query: 800  E-------------KIKKFCQ-----DARQFN---------------IQIMPPS-VNTPC 825
            +             KI++         A++ N               I+I P S V +  
Sbjct: 1308 DADIICRGKEAVLNKIREIENKGNEASAKEKNLLTILEVALEMYVRGIKIRPVSLVESTA 1367

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
              F + +  +    AA++GVG   AR I  A  +  F S+ED  +R    ++++ V+E L
Sbjct: 1368 TRFLITEEGLLPPFAALQGVGEAAARSIERARDEAKFTSIEDLRTRA---RISKTVVEVL 1424

Query: 886  VFAGAL 891
               G L
Sbjct: 1425 QNHGCL 1430


>gi|254479461|ref|ZP_05092788.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Carboxydibrachium pacificum DSM 12653]
 gi|214034604|gb|EEB75351.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Carboxydibrachium pacificum DSM 12653]
          Length = 1375

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 185/880 (21%), Positives = 324/880 (36%), Gaps = 194/880 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            + +LV   +G + L E++SR  L +   ++ RI  S L ++  EGLI+ +    G + RA
Sbjct: 580  VTILVKDQKGLRNLYEIISRSNL-EFFHRTPRIPKSLLVKM-REGLIIGSACEQGEVFRA 637

Query: 159  FFFNSSQVAEKRL---------LTFKKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTH 207
                 S + EK+L         L  + +  +   +     R  +  +E   ++ +L   +
Sbjct: 638  LV---SNLEEKKLEDIINFYDYLEIQPVGNNEFLIERGEVRSVEELKEINRKIYELGKKY 694

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
               +VAT +  FL   D     +LMA         KD  R  P  Y +   EM+  F  L
Sbjct: 695  NKLVVATGDVHFLDPWDDVYRKILMAGK-----GYKDADR-QPPLYFRTTEEMLMEFEYL 748

Query: 268  PE--ALENTVEIARRCSFILQVHAPI----LPRFIE---KECDDIQKEEENELRNKAVAG 318
             E  A E  +E   + + I++   PI     P  IE   +E   I  E+ +E+    +  
Sbjct: 749  GEEAAREVVIENPNKIAEIVEDVKPIPEGTFPPVIEGAEEELRRITLEKAHEIYGDPLPP 808

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            +                  ++RLD ELN I    ++  ++I    +  + ++   VG  R
Sbjct: 809  I-----------------VQERLDRELNAIINNGYAVMYVIAQKLVSKSLQDGYLVG-SR 850

Query: 379  GSGAGSVTAYALTITDIDPL---------------------------------------- 398
            GS   S+ A    IT+++PL                                        
Sbjct: 851  GSVGSSLVATMSGITEVNPLPPHYVCPKCKHSEFVTDGSFGCGVDMPDKYCPNCGTLMKK 910

Query: 399  -RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
              F + FE F+  +    PD D++F  + +    RY +  +G   V +  T G+L  K A
Sbjct: 911  DGFDIPFEVFMGFEGDKEPDIDLNFSGEYQPIAHRYTEELFGKGHVFRAGTIGTLADKTA 970

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
                       Y  V                        ++ E R        +  ++  
Sbjct: 971  -----------YGYV-----------------------KKYFEERNLTVHKSEIKRLTMG 996

Query: 518  LEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFD 572
              G+ R    H  G+++   D+ +    P+ R      +D+  T F+   +    L+K D
Sbjct: 997  CTGIKRTTGQHPGGVMVVPKDKSIYDFTPIQRPADAEDTDVITTHFDYHSL-SGKLLKLD 1055

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
             LG    T+++   D        V+   IP DD +T  L T+   LGI   E  G     
Sbjct: 1056 ILGHDDPTVIRMLEDLTG-----VNARKIPLDDKKTMSLFTSVEALGI-DPEELGTPVGT 1109

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
             G+     + +  ++   RP   D +V  +   +G           D  L   Q +I  +
Sbjct: 1110 LGLPEFGTKFVRQMLIETRPTTFDELVRISGLSHG----------TDVWLNNAQDII--R 1157

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKK----IKEEMDKQK---ERFISGASKNGISKTI 745
            E +  + ++++        ++ + M KK    I E + K K   +  I    K+G+    
Sbjct: 1158 EGIATLKEVIAARDDIMLYLISKGMDKKLSFKIMENVRKGKGVTQEEIEEMKKHGVP--- 1214

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV------ 799
              + F    +   Y F K+HA AY +++++ A+ K +YP  F A   T+  D+       
Sbjct: 1215 --DWFIQSCQKIKYMFPKAHAVAYVIMAFRIAYFKVYYPEAFYATYFTVRADDFNLDIVL 1272

Query: 800  ---EKIKKFCQDARQFNIQIMPPSVNTPCV-------------------------DFKVG 831
               E IK+  ++         P   N   V                          F + 
Sbjct: 1273 GGKESIKRAIKEIEAKGNNATPKEKNLLTVLEVALEMYLRGIKFTNVDLYRSDAEKFLIT 1332

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            +  +   L +++GVG   A+ I +   +  F S+EDF +R
Sbjct: 1333 EEGLLPPLNSLEGVGIQAAKAIAQERENGKFISIEDFRNR 1372


>gi|152976184|ref|YP_001375701.1| DNA polymerase III PolC [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152024936|gb|ABS22706.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 1433

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 198/921 (21%), Positives = 347/921 (37%), Gaps = 237/921 (25%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            + LL ++ EG + L +L+S  ++ +   +  RI  S L++   EG+++ T    G +  A
Sbjct: 610  VTLLATSDEGLKNLYKLISYSHV-NYFYRVPRIPRSLLKK-HREGILVGTACDKGEVFEA 667

Query: 159  FFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPL 211
                + +  E+    +        ++    + + L R  G  +   S +V+L  T + P+
Sbjct: 668  MMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVELELVRDEGQLKTIISNLVKLGETLDKPV 727

Query: 212  VATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
            VAT N  +L+ ED     +L++    +  +++   P V    Y +   EM+  FS L E 
Sbjct: 728  VATGNVHYLNPEDAIYRKILISSQGGANPLNRHSLPPV----YFRTTDEMLDCFSFLGEE 783

Query: 270  -----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--EVR 322
                  + NT +IA   S I +VH P+                +++L    + G   E R
Sbjct: 784  KAKEIVVTNTQKIA---SLIGEVH-PV----------------KDDLYTPKIEGADDETR 823

Query: 323  LAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
                 +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG  R
Sbjct: 824  DMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLIDGYLVG-SR 882

Query: 379  GSGAGSVTAYALTITDIDPL---------------------------------------- 398
            GS   S  A  + IT+++PL                                        
Sbjct: 883  GSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKNCPNCNVPYKK 942

Query: 399  -RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
                + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K A
Sbjct: 943  DGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEKTA 1002

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
                       Y  V                 +  A D       + +  VDRL+     
Sbjct: 1003 -----------YGYV-----------------KGYASDHNL---TIRNAEVDRLV---AG 1028

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIE 564
              G+ R    H  GI++        VP Y D+    P+             T F+   I 
Sbjct: 1029 CTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQYPADSVGAEWRTTHFDFHSIH 1080

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT---------- 614
               L+K D LG    T+++   D        +D   IP DD E   + ++          
Sbjct: 1081 D-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSSPESLGVTEEQ 1134

Query: 615  ----KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNRKN 666
                 GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN    
Sbjct: 1135 INCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGTCT 1194

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE +
Sbjct: 1195 LSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEEWE 1237

Query: 727  KQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++ +   + G   +   K               Y F K+HAAAY +++ + A+ K H+P+
Sbjct: 1238 EEMRNNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHFPL 1284

Query: 786  EFLAASMTLEMDN----------------VEKIKKFCQDA-------------------R 810
             F AA  T+  D+                +E+I +   DA                   R
Sbjct: 1285 LFYAAYFTVRADDFDVDVMAKGSASIRAKIEEIAQKGLDASPKEKSLLTVLEMTLEMCER 1344

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
             ++ Q +     +   DF +  + +     A+ G+GT  A  I+EA  +  F S ED   
Sbjct: 1345 GYSFQKV-DLYRSHATDFIIDGDTLIPPFNAVSGLGTNAAISIVEARKNGDFLSKEDLQQ 1403

Query: 871  RVDSKKLNRRVLESLVFAGAL 891
            R    KL++ ++E L   G L
Sbjct: 1404 R---SKLSKTIIEYLDSQGCL 1421


>gi|76581584|gb|ABA51059.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia pseudomallei
            1710b]
          Length = 389

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 23/232 (9%)

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK---VGDNR----IYYSLAAIKGVGTT 848
            MD+ +K+K    D     + ++PP +N     F+     D +    I Y L AIKG G  
Sbjct: 1    MDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKRSRTIRYGLGAIKGSGQN 60

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
                I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA D    +R QLL S+   
Sbjct: 61   AIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAFDSLHENRAQLLASVPLA 120

Query: 909  QKYAQWVEKNRTNKH----ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
             + A+    N           + AH+     +    +K        R + E+  LGFY S
Sbjct: 121  MEAAEQAAANALQAGLFDIGGVPAHQHALVDEPAWDDK-------RRLQEEKGALGFYLS 173

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRI 1015
            GH  D Y+  +R+       + +  ++ G +  +A ++ S + + T++G  +
Sbjct: 174  GHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMV 221


>gi|239636258|ref|ZP_04677260.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            warneri L37603]
 gi|239597613|gb|EEQ80108.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            warneri L37603]
          Length = 1438

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 200/940 (21%), Positives = 354/940 (37%), Gaps = 222/940 (23%)

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G    ID+  N K++N+          + L+V   +G + L ++VS   L+    ++ R
Sbjct: 588  LGVTNHIDI--NQKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSES-LVTYYYRTPR 644

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL-- 186
            I  S L E   EGL++ T    G +  A         EK  +   F ++    LY +L  
Sbjct: 645  IPRSLLNEY-REGLLVGTACDEGELFTAVMQRDQSEVEKIAKYYDFIEVQPPALYQDLID 703

Query: 187  -QRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +  R  +   E   ++++   +  +P++AT N+ +L E D  A  +L+A       SQ 
Sbjct: 704  RELIRDTETLHEIYHRLIEAGKSANIPVIATGNAHYLYEHDAIARKILIA-------SQP 756

Query: 244  DRP--RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--APILPRFIEK 298
              P  R T P+ + +   EM+     L E     + +    +   Q+    PI  +    
Sbjct: 757  GNPLNRSTLPEAHFRTTDEMLDELHFLGEEKAYELVVTNTNALADQIERVVPIKDKLYTP 816

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFS 354
              D               A  E+R    + AK  + +D  Q    RL+ EL+ I    FS
Sbjct: 817  RMDG--------------ANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSIIGNGFS 862

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------- 398
              +LI    ++ +  +   VG  RGS   S  A    IT+++PL                
Sbjct: 863  VIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICTHCKTSEFFD 921

Query: 399  ------RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
                   F L                    FE FL      +PD D++F  + +     Y
Sbjct: 922  DGSVGSGFDLPDKKCPECGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNY 981

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
             +  +G ++V +  T G++  K A   V   L               ND       Q I 
Sbjct: 982  TKVLFGEDKVFRAGTIGTVAEKTAFGFVKGYL---------------ND-------QGI- 1018

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                    R A+  VDRL+   +   G+ R    H  GI++        VP Y D+    
Sbjct: 1019 ------HKRGAE--VDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFT 1059

Query: 554  PV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+             T F+   I    ++K D LG    T+++   D        +D   
Sbjct: 1060 PIQYPADDQSSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKT 1113

Query: 601  IPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            IP DD ET  + ++               GT G+ +  +  +RQ LE  +P    +++ +
Sbjct: 1114 IPVDDKETMKIFSSPESLGVTEEDILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQI 1173

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
              L       ++ + N ++  +  I  +  +I         +++Y    +  A L    +
Sbjct: 1174 SGLSHGT---DVWLGNAQELIRAGICDLSSVIGC----RDDIMVY----LMYAGLEPSMA 1222

Query: 707  LSEADVLRRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
                + +R+  G+ + +EM +  KE  +     +   K               Y F K+H
Sbjct: 1223 FKTMEFVRK--GRGLTDEMVEAMKENDVPDWYLDSCRKI-------------KYMFPKAH 1267

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--ARQFNI 814
            AAAY +++ + A+ K H+P+ + A+  T+   + +          IK   +D  +R  ++
Sbjct: 1268 AAAYVLMAVRIAYFKVHHPLYYYASYFTVRASDFDLITMIKDKTGIKNTVKDMYSRYMDL 1327

Query: 815  ----------------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
                                  ++ P S+  +   DF +  + +     A+ G+G   A+
Sbjct: 1328 GKKEKDVLTVLEIMNEMAHRGYRMQPISLEKSQAFDFIIEGDTLIPPFIAVPGLGENVAK 1387

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             I+EA  + PF S ED   +     L+++V+E L   G+L
Sbjct: 1388 RIVEAREEGPFLSKEDLNKKA---GLSQKVIEYLDDLGSL 1424


>gi|110808209|sp|P0C1P9|DPO3_STAAU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|1483182|dbj|BAA13160.1| DNA polymerase III [Staphylococcus aureus]
          Length = 1435

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 200/935 (21%), Positives = 352/935 (37%), Gaps = 233/935 (24%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 595  NKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 652

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYR 196
            EGL++ T    G +  A         EK  +   F ++    LY +L   +  R  +   
Sbjct: 653  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDLIDRELIRDTETLH 712

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP---RVTPD 251
            E   +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P      P+
Sbjct: 713  EIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLPE 765

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR          
Sbjct: 766  AHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM--------- 816

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             E  NE         E+R    A A+  + +D  Q    RL+ EL  I    F+  +LI 
Sbjct: 817  -EGANE---------EIRELSYANARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLIS 866

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 867  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGS 925

Query: 399  RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE+FL      +PD D++F  + +     Y +  +G
Sbjct: 926  GFDLPDKTCETCGAPLIKEGQDIPFEKFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 985

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ++V +  T G++  K A   V   L               ND       Q I       
Sbjct: 986  EDKVFRAGTIGTVAEKTAFGYVKGYL---------------ND-------QGI------- 1016

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---- 555
              R A+  +DRL+   +   G+      H  GI++        VP Y D+    P+    
Sbjct: 1017 HKRGAE--IDRLV---KGCTGVKATTGQHPGGIIV--------VPDYMDIYDFTPIQYPA 1063

Query: 556  ---------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1064 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1117

Query: 607  ETYHLLTTKGTLGIFQLE---SSGM----------RQALEGMQPDCIEDIIALVSLYRPG 653
            E   + +T  +LG+ + E    +G           RQ LE  +P    +++ +  L    
Sbjct: 1118 EVMQIFSTPESLGVTEDEILCKTGTFGVPNSDRIRRQMLEDTKPTTFSELVQISGLSHGT 1177

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             +               + +   LI   + +   VI  ++ +M +  + +G        L
Sbjct: 1178 DV--------------WLGNAQELIKTGICDLSSVIGCRDDIM-VYLMYAG--------L 1214

Query: 714  RRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
              +M  KI E + K K   E  I    +N +      +  ++      Y F K+HAAAY 
Sbjct: 1215 EPSMAFKIMESVRKGKGLTEEMIETMKENEVPDWYLDSCLKI-----KYIFPKAHAAAYV 1269

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--ARQFNI----- 814
            +++ + A+ K H+P+ + A+  T+   + +          I+   +D  +R  ++     
Sbjct: 1270 LMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEK 1329

Query: 815  -----------------QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                             ++ P S+  +   +F +  + +     ++ G+G   A+ I+EA
Sbjct: 1330 DVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEA 1389

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              D PF S ED   +     L ++++E L   G+L
Sbjct: 1390 RDDGPFLSKEDLNKKA---GLYQKIIEYLDELGSL 1421


>gi|315651645|ref|ZP_07904656.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986]
 gi|315486099|gb|EFU76470.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986]
          Length = 1483

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 188/910 (20%), Positives = 334/910 (36%), Gaps = 207/910 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +++L     G   L +L+S  ++ D   +  RI  S L ++  EGLI+ +    G + +A
Sbjct: 651  VIILAKNDIGRINLYKLISLSHI-DFFNKRPRIPKSILAKM-REGLIIGSACEQGEVYKA 708

Query: 159  FFFNSSQVAEKRLLTFKKLF-----GDRLYVNLQRHRGYDRYRESQ-----VVQLAYTHE 208
               +++     R+++F         G+ +++            + Q     + +L   ++
Sbjct: 709  ILDDATDAELNRIVSFYDYLEIQPIGNNMFLIDDEQNDIHSKEDLQDINRRIAELGDIYD 768

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL- 267
             P+VAT +  FL+ ED E +  ++          KD   + P  YL+   EM+  F  L 
Sbjct: 769  KPVVATCDVHFLNPED-EIYRRIIFYGKG----YKD-ADIQPPLYLRTTKEMLDEFEYLG 822

Query: 268  -PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
              +A E  V   R  + +++V +P+ P     +C  + +  + +L               
Sbjct: 823  SEKAYEVVVTNTRMIADMVEVISPVRP----DKCPPVIENSDEDL-------------TA 865

Query: 327  AIAKGYHAQDYRQ-------RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
            A  K  H Q  +        RL  ELN I    F+  ++I    ++ + ++   VG  RG
Sbjct: 866  ACYKKAHEQYGKNLPKIVEDRLKKELNSIISNGFAVMYIIAKKLVEKSNEDGYLVG-SRG 924

Query: 380  SGAGSVTAYALTITDIDPL----------------------------------------- 398
            S   S  AY   IT+++PL                                         
Sbjct: 925  SVGSSFAAYTSGITEVNPLPAHYYCDCKYVDFDSPEVKAFAGRAGCDMPDKICPKCGKKL 984

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                F + FE FL       PD D++F  + +     Y +  +G     +  T G+L  K
Sbjct: 985  KKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQPNAHAYTEVIFGKGHTYRAGTVGTLANK 1044

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V        ++  R C+                              V+RL   +
Sbjct: 1045 TAYGYVKHYFD-DKNENKRKCE------------------------------VNRL---A 1070

Query: 516  QKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIK 570
               EG+ R    H  GI++      +    P+ R   D+ +++  T F+   I+   L+K
Sbjct: 1071 TGCEGVRRTTGQHPGGIIVLPHGEEIYTFTPVQRPANDMTTNIITTHFDYHAIDH-NLLK 1129

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-TTK-------------- 615
             D LG +  T+++   D      VK     IP D  ET  L   TK              
Sbjct: 1130 LDILGHQDPTMIRMLQDLTGIDPVKD----IPLDSKETMSLFQNTKALGIEPKDILDCPL 1185

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
            G LG+ +  +    Q L   +P+ + D++ +  L     +          N +  I+   
Sbjct: 1186 GALGVPEFGTDFAMQMLLDTKPEGLSDLVRIAGLAHGTDV-------WLGNAQTLILEGK 1238

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
              I   +     ++IY  +      L  G S    + +R+  GK + +E       ++  
Sbjct: 1239 ATIRTAICTRDDIMIYLIE----KGLDEGESFKIMESVRK--GKGLTDE-------WVEH 1285

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              + G+      + +    K   Y F K+HAAAY +++++ A+ K  YP+ +  A  T+ 
Sbjct: 1286 MEEKGVP-----DWYIWSCKKIKYMFPKAHAAAYVMMAWRIAYCKIFYPLAYYTAYYTIR 1340

Query: 796  MDNVE-KIKKFCQDARQFNIQIMPPSVNTPCVD--------------------------- 827
                   +    ++  ++NI       +    D                           
Sbjct: 1341 ATGFNYSLMCMGREKLEYNISEYRKKTDATAKDADTLRDMRIVQEMYARGFEFAKIDLFK 1400

Query: 828  -----FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                 F++ DN +I  SL++I G+G T A  I+ A+   PF S +DF SR    K    +
Sbjct: 1401 VHPTKFQIMDNGKIMPSLSSIDGLGETAATSIVNATKAGPFISKDDFMSRAKVGKSTCEL 1460

Query: 882  LESLVFAGAL 891
            L+SL   G L
Sbjct: 1461 LDSLNLLGDL 1470


>gi|150390440|ref|YP_001320489.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens QYMF]
 gi|149950302|gb|ABR48830.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens QYMF]
          Length = 1432

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 175/798 (21%), Positives = 290/798 (36%), Gaps = 199/798 (24%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++V L     LP++AT +  FL   D     +LMA    T     D     P  YLK   
Sbjct: 717  KIVALGNKINLPVIATGDVHFLDPNDEVFRKILMAGQGFT-----DADNQAP-LYLKTTD 770

Query: 259  EMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
            EM+  F  L    A +  V   R+ +  ++   PI       E +      + ELR    
Sbjct: 771  EMLDEFRYLGSKTAKDVVVNNPRKLNEEIEKLIPIPDGTFPPEIEG----SDEELRRMCY 826

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
               E R+    I      +  + RLD ELN I    ++  ++I    +  + ++   VG 
Sbjct: 827  EKAE-RIYGNPIP-----EIVKTRLDKELNSIISNGYAVMYIIAQKLVTKSLRDGYLVG- 879

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFS-------------------------- 401
             RGS   S  A    IT+++PL         R+S                          
Sbjct: 880  SRGSVGSSFAATMSDITEVNPLAPHYVCPECRYSEFITDGSYGSGADLPDKKCPECHGQL 939

Query: 402  ------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL  +    PD D++F  + + E   Y +  +G  +V +  T G++  K
Sbjct: 940  IKDGHEIPFEVFLGFEGDKEPDIDLNFAGEYQSEAHHYTEELFGKGKVYRAGTIGTIADK 999

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V + L+                                RE       V+RL   +
Sbjct: 1000 TAYGFVKKYLEE-------------------------------RELYYTSAEVNRL---T 1025

Query: 516  QKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIK 570
                G+ R +  H  G++I   +  + +  P+     D  S +    F+   I    L+K
Sbjct: 1026 MGCTGVKRTSGQHPGGVMIVPANLDVHEFSPIQYPANDSTSGVITMHFDYHSI-SGRLLK 1084

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------G 616
             D LG    T+++   D        ++   IP DD +T  L TT               G
Sbjct: 1085 LDILGHDVPTIIKMLEDLTG-----INAQEIPLDDEKTISLFTTTKNLGIDPKELGCEVG 1139

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            TLGI +  +  +RQ L   +P    +++ +  L         V  NN ++          
Sbjct: 1140 TLGIPEFGTKFVRQMLLDTKPSTFGELVRISGLSHGTD----VWLNNAQD---------- 1185

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLL-----SGYSLSEADVLRRAMGKKIKEEM----DK 727
            L+   + E + VI  ++ +M    L      S + + E   +R+  G K +EE     + 
Sbjct: 1186 LVRNNIAELKDVISTRDDIMNYLMLKGLPPKSAFKIMEN--VRKGKGLKPEEEQLMKENN 1243

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
              E +I    K                    Y F K+HAAAY ++S++ A+ K HYP  F
Sbjct: 1244 VPEWYIDSCKK------------------IKYMFPKAHAAAYVMMSFRIAYCKVHYPQAF 1285

Query: 788  LAASMTLEMDN----------------VEKIKKFCQDA----RQF-------------NI 814
             A   T + ++                +++++    D     + F             NI
Sbjct: 1286 YATYFTTKAEDFDAHLIGKGKAVVKSKIDELELMGNDLTAKDKNFLTVLEVALELYCRNI 1345

Query: 815  QIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
            +++   V     D F + D ++   L A++GVG   AR+I +      F S ED   R  
Sbjct: 1346 ELLSVDVYKSDPDKFTIIDGKLLPPLRALQGVGQNAARNIAKVREAGEFLSKEDLRERA- 1404

Query: 874  SKKLNRRVLESLVFAGAL 891
              K+ + V+E+L   G +
Sbjct: 1405 --KVTKTVIEALTNHGCI 1420


>gi|291533678|emb|CBL06791.1| DNA polymerase III, alpha chain, Gram-positive type [Megamonas
           hypermegale ART12/1]
          Length = 955

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 212/1014 (20%), Positives = 370/1014 (36%), Gaps = 252/1014 (24%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++  +S   ++   A    PAIAITD   + +  E  + A    I+ I 
Sbjct: 49  VELHAHTHMSNMDAVVSAKELISTAARWGWPAIAITDHGVVQAFPEAMKAAKDNKIKVIY 108

Query: 72  GCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           G +  +   D   +  N           I++L   + G + +  +VS  +L    K   R
Sbjct: 109 GIEGYLTGDDYQQRRANH----------IIMLAKNSIGLRNIYRMVSLSHLKYLYKSRPR 158

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN----- 185
           +    + E+  EG+I+ +   +G + RA   N S   +++LL     + D L +      
Sbjct: 159 LPKKIISEL-REGVIIGSACEAGELIRAIVNNES---DEKLLEIASFY-DYLEIQPIGNN 213

Query: 186 --LQRHRGYDRYRESQ--------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             L R+  +   +  +        V +LA      L+AT +  FL+ +D     +LM   
Sbjct: 214 AFLIRNENFPDVQTDEDLIKINLKVAELAKKLNKMLIATCDVHFLNAKDSIYRAILMKGK 273

Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILP 293
                 ++      P  YL+   EM+  FS L E  A E  V   R+ + +++V  PI  
Sbjct: 274 GFEDAEKQ------PPLYLRTTDEMLKEFSYLGEELAYEAVVTNPRKIADMVEVFKPI-- 325

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNV 347
                          +EL +  + G +  +   + AK          +  + RL+ ELN 
Sbjct: 326 --------------PDELYSPMIPGADQEIHDMSYAKARELYGENLPKVVQDRLELELNS 371

Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--------- 398
           I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL         
Sbjct: 372 IIGHGFAVLYLIAHKLVKKSLDDGYLVG-SRGSVGSSFVATMTNITEVNPLPPHWRCPHC 430

Query: 399 RFS--------------------------------LLFERFLNPDRMSMPDFDIDFCQDR 426
           R S                                + F  F+  D   +PD D++F  D 
Sbjct: 431 RHSEFIEDGTYGCGFDMPDKDCPHCGTKMIKDGHDIPFAVFMGFDGDKVPDIDLNFSGDY 490

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           +    +Y +  +G + V +  T  ++  K A           Y  V +            
Sbjct: 491 QPVAHKYTEELFGKDNVFRAGTIATVADKTA-----------YGYVKKFF---------- 529

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVP 544
                   D +  + R  D  ++ L+       G+ R    H  GI++  R +      P
Sbjct: 530 --------DEKGIKKR--DAYINSLV---NGCTGVKRTTGQHPGGIMVIPRNMDVHHFTP 576

Query: 545 MYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
           + R   D  ++   T F+   I  + L+K D LG    T++ K L+ +  R    D   I
Sbjct: 577 IQRPADDTTTNTITTHFDYHSIS-SRLVKLDILGHDDPTVI-KMLENITHR----DPRTI 630

Query: 602 PFDDHETYHLLT--------------TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
           PFDD  T  + +              T GT GI +  +   RQ L+  +P    D++ + 
Sbjct: 631 PFDDPATMSIFSSTEALGVTPEELGATSGTFGIPEFRTPFTRQMLDDTKPQKFSDLVRIS 690

Query: 648 SLYRPGPI----------DNIVVYNNRKNGKEKIVS--IHPLIDPMLKETQGVIIYQEQV 695
                  +                ++  + ++ I+   IH  IDP+              
Sbjct: 691 GFSHGTNVWLENAQDLITSGTCTVSDAISCRDDIMMHLIHSGIDPLF-----------SF 739

Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + ++  G  LSE D+      K +K+           G  +  I   + +        
Sbjct: 740 KTMEKVRKGKGLSEDDI------KVMKD----------GGIPQWYIDSCLKIK------- 776

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL--------------------- 794
              Y F ++HA AY +++Y+ A+ K HYP+ F AA  ++                     
Sbjct: 777 ---YLFPRAHATAYVMMAYRIAFCKVHYPLAFYAAYFSIRAAEFDADIISKGKLAVRDKL 833

Query: 795 -EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA------------- 840
            E+  +EK KK     + F + ++  +       F V    +Y S A             
Sbjct: 834 DEIIELEKQKKLSVKDKGFQV-VLELAWEMYLRGFSVEKIDLYKSNADKFILHEKSLLPP 892

Query: 841 --AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             A+ G+ T  A +I++A  +  F S++D   R     L+  ++E L   G LD
Sbjct: 893 FTALTGISTMAANNIVQARLEGEFTSIDDLKKRA---SLSTPIVERLREHGCLD 943


>gi|256003329|ref|ZP_05428320.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360]
 gi|281417714|ref|ZP_06248734.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
 gi|255992619|gb|EEU02710.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360]
 gi|281409116|gb|EFB39374.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
 gi|316940249|gb|ADU74283.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 1313]
          Length = 1442

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 191/906 (21%), Positives = 329/906 (36%), Gaps = 209/906 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++LV    G + L ++VS+ +L +   +  R+    L  +  EGLI+ +   +G + RA 
Sbjct: 621  IILVKNYVGLRNLYKIVSKTHL-EYFHKRPRLPRKLLM-MHREGLILGSACEAGELYRAI 678

Query: 160  FFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPL 211
              N  +    R++ F      + L  +R  V   +    +  +    ++V L   +  P+
Sbjct: 679  LENKDEDEISRIVKFYDYLEIQPLGNNRFLVESGKVNSEEDLKNINRKIVALGEKYNKPV 738

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            VAT +  F+  +D     +LMA    +     D     P  Y +   EM+  F  L    
Sbjct: 739  VATCDVHFMDPQDEVFRRILMAGQGFS-----DADNQAP-LYFRTTDEMLEEFEYLGREK 792

Query: 270  ----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
                 + NT  IA  C  IL +     P  IE   ++I+   EN+ R             
Sbjct: 793  CYEVVVTNTNLIADMCEDILPIPEGTFPPKIEGAEEEIRMLAENKARE------------ 840

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
              I      +   +R++ ELN I +  FS  ++I    +  +  +   VG  RGS   S 
Sbjct: 841  --IYGDPLPEIVEKRMEKELNSIIKNGFSVMYIIAQKLVWKSLSDGYLVG-SRGSVGSSF 897

Query: 386  TAYALTITDIDPL-----------------------------------------RFSLLF 404
             AY + IT+++ L                                          + + F
Sbjct: 898  VAYLIGITEVNSLPPHYICENCKYSEFIEDGSYGCGFDMPEKECPRCGKILKKDGYDIPF 957

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  +    PD D++F  + +    +Y +  +G   V +  T G++  K A   V   
Sbjct: 958  ETFLGFEGDKEPDIDLNFSGEYQPIAHKYTEELFGVGHVYRAGTIGTIAEKTAYGFVKNY 1017

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L                             D R   A  A+  ++RL+   +   G+ R 
Sbjct: 1018 L-----------------------------DERGIVATNAE--INRLV---KGCTGVKRT 1043

Query: 525  ASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  G++I   DR + +  P+     D  S    T F+   I    L+K D LG    
Sbjct: 1044 TGQHPGGVMIVPQDREIYEFCPIQYPADDPDSGTITTHFDYHSI-SGRLLKLDILGHDDP 1102

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLES 625
            T+++   D        V+   IP  +  T  + ++               GT  I +  +
Sbjct: 1103 TVIKMLEDLTG-----VNARTIPIGEKRTMGIFSSTEPLGIRPEDINCPVGTFAIPEFGT 1157

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
              +RQ L   +P    ++I +  L         V  NN ++          L+   +   
Sbjct: 1158 KFVRQMLVDTKPKTFSELIRISGLSHGTD----VWLNNAQD----------LVRNNIASL 1203

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRA----MGKKIKEEMDK-QKERFISGASKNG 740
              VI  ++ +M     L  Y L      +       GK +KEE ++  +E+ +       
Sbjct: 1204 SEVICTRDDIM---LNLIHYGLPNKTAFKIMEDVRKGKGLKEEYEQIMREKKVPDWYIES 1260

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
              K               Y F K+HAAAY +++++ AW K +YP  F A   T+  D  +
Sbjct: 1261 CKKI-------------KYMFPKAHAAAYVMMAFRIAWFKVYYPEAFYATYFTVRADEFD 1307

Query: 801  -------------KIKKF--------------------CQDARQFNIQIMPPSV-NTPCV 826
                         KIK++                      +     I+ +P  +  +  V
Sbjct: 1308 ASMMCHGKEKVKNKIKEYELKGNNMTQKEKNTLTILEVANEMYARGIKFLPIDIYKSDAV 1367

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             FK+  + +   L A++G+G + A  I EA     F S++D   R    K+++ V+E L 
Sbjct: 1368 KFKIEKDGLRPPLNALQGLGVSAAHSIAEARNQGEFLSVDDLRIRA---KVSKTVIEILQ 1424

Query: 887  FAGALD 892
              G LD
Sbjct: 1425 QNGCLD 1430


>gi|300361904|ref|ZP_07058081.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03]
 gi|300354523|gb|EFJ70394.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03]
          Length = 1432

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 164/775 (21%), Positives = 297/775 (38%), Gaps = 169/775 (21%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT +S ++   +     +L+A   S      +R +  PD +  +  EM+  FS L E
Sbjct: 724  PVVATGDSHYVEPHEAIYRKILLAAQKSN----PNRNKNLPDLHFYSTQEMLDAFSFLGE 779

Query: 270  ------ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAVAGLE 320
                   +ENT ++A +   I  + + + P  IE   +E  D+   +  EL  K +  + 
Sbjct: 780  DVAKEIVIENTNKLADQIEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKI- 838

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                               R++ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 839  ----------------VEDRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 881

Query: 381  GAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFC-----QDR 426
               S+ A    IT+++PL         ++S  FE         +PD D   C     +D 
Sbjct: 882  VGSSLVATMSGITEVNPLAPHYRCPKCKYSKFFENGEYGSGYDLPDKDCPKCGTPLVKDG 941

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +D         +G ++V  I    S   +    +  R +              P++    
Sbjct: 942  QDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNYIRVM------------FGPDNSFRA 988

Query: 487  VSLQAIADDSRF---------REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--G 535
             ++  +AD + +          E  L +  +DRL   +    G+ R    H AGIV+   
Sbjct: 989  GTIATVADKTAYGYVKHYEDENELHLRNAELDRL---AAGASGVKRTTGQHPAGIVVVPD 1045

Query: 536  DRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            +  +    P+     D+ +    T F+   I    ++KFD LG    T+++     + Q 
Sbjct: 1046 NMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHD-NILKFDILGHDDPTMIR-----MLQD 1099

Query: 593  GVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPD 638
               +D   IP DD     L ++               GTLG+ +  +  +R  LE  +P 
Sbjct: 1100 LSGIDPLTIPPDDPGVMSLFSSPEILGVTPEQIQSKTGTLGVPEFGTKFVRGMLEETKPT 1159

Query: 639  CIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
               +++ +  L        G  +N++      NG  K+ ++    D ++ +     +  E
Sbjct: 1160 TFSELLQISGLSHGTDVWLGNAENLI-----NNGTCKLKNVIGCRDNIMMDLIHWGVKPE 1214

Query: 694  -QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
                 +  +  G  +S+ ++       KI ++ DK  + +I    K              
Sbjct: 1215 VAFFTMESVRHGKGISDENM-------KILKKNDKIPDWYIPSCLK-------------- 1253

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD------------NVE 800
                  Y F K+HA AY +++ + AW K +YPV + A+  ++  D             V+
Sbjct: 1254 ----IKYMFPKAHATAYILMALRIAWFKVYYPVIYYASYFSVRADLFDLVAMSHGKNTVK 1309

Query: 801  KIKKFCQD---------------------ARQFNIQIMPPSVN-TPCVDFK-VGDNRIYY 837
               K  QD                       +  I+I    VN +  +DFK + D+ I  
Sbjct: 1310 AAMKEIQDKGMDVSAKDKSLLTVLEIANECLERGIKIKMVDVNESEAMDFKIIDDHTILA 1369

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               A+ G+G   A+ I+ A A++ F S ED  +R    K+++ ++E     G L+
Sbjct: 1370 PFNAVPGLGDNAAKQIVAARAEQKFLSKEDLATR---GKVSQTIMEYFENNGVLE 1421


>gi|255284409|ref|ZP_05348964.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella
            formatexigens DSM 14469]
 gi|255265034|gb|EET58239.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella
            formatexigens DSM 14469]
          Length = 1530

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 197/903 (21%), Positives = 330/903 (36%), Gaps = 194/903 (21%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +++L     G   L  LVS  +L    ++  RI  S L +   EGLI+ +   +G + RA
Sbjct: 702  VIILAKNDVGRVNLYRLVSFSHLQYYNRRP-RIPKSALNQY-REGLIVGSACEAGELFRA 759

Query: 159  FFFNSSQVAEKRLLTFKKLF-----GDRLYVNLQRH--RGYDRYRE--SQVVQLAYTHEL 209
                 S+    R++ F         G+  ++  + +     +  RE   ++V+L      
Sbjct: 760  VLEGKSEPEIARIVDFYDYLEIQPIGNNAFLLKEDNDINSEEDLRELNRKIVRLGEQFNK 819

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT +  FL+ ED     ++MA         KD     P  +L+   EM+  F+ L  
Sbjct: 820  PVVATCDVHFLNPEDEIYRRIIMAGK-----GFKDADEQAP-LFLRTTEEMLKEFAYLGS 873

Query: 270  ------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR----NKAVAGL 319
                   + NT +IA  C  I    +P+ P     +C  +  + +  LR    N+A    
Sbjct: 874  EKAEEVVITNTNKIADMCEKI----SPVRP----DKCPPVIPDSDKTLRTICYNRAHQIY 925

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
              +L               +RL+ ELN I    F+  ++I    +  +  +   VG  RG
Sbjct: 926  GEKLPPIVT----------ERLERELNSIISNGFAVMYIIAQKLVWKSNADGYLVG-SRG 974

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S  A    IT+++PL                                         
Sbjct: 975  SVGSSFVATMAGITEVNPLSPHYYCEDCHYYDFDSDEVKAYSGRAGCDMPDKNCPVCGAP 1034

Query: 400  -----FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                 F + FE FL       PD D++F  D +    RY +  +G     +  T G+L  
Sbjct: 1035 LRKEGFDIPFETFLGFKGNKEPDIDLNFSGDYQGNAHRYTEVIFGEGHTFRAGTVGTLAD 1094

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  + Q  R C+                              ++R++E 
Sbjct: 1095 KTAFGYVKKYYE-EHGQRKRTCE------------------------------INRIVE- 1122

Query: 515  SQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLI 569
                 G+ R    H  GI++      +    P+     D  +D+  T F+   I+   L+
Sbjct: 1123 --GCVGVRRTTGQHPGGIIVLPHGEEIYSFTPIQHPANDTETDIITTHFDYHSIDH-NLL 1179

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
            K D LG    T+++   D        +    IP DD     L  +   LG+   E  G  
Sbjct: 1180 KLDILGHDDPTMIRMLEDLTG-----LHAQDIPLDDKSVMSLFQSTEALGVTPEEILGCP 1234

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGV 688
                G+     E +I ++   +P    ++V  +   +G +  + +   LI          
Sbjct: 1235 LGSLGIPEFGTEFVIQMLQDTKPQSFSDLVRISGLSHGTDVWLGNAQTLIQEGKATISTA 1294

Query: 689  IIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQ-KERFISGASKNGISKT 744
            I  ++ +M       L S  S +  + +R+  GK +K E +K+ KE  +           
Sbjct: 1295 ICTRDDIMTYLIRMGLDSELSFTIMESVRK--GKGLKPEWEKEMKEHDVP---------- 1342

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT------------------HYPV- 785
               + +    K   Y F K+HAAAY +++Y+ A+ K                   +Y + 
Sbjct: 1343 ---DWYIWSCKKIKYMFPKAHAAAYVMMAYRIAYCKVYYPLAYYAAYFSIRASAFNYELM 1399

Query: 786  ----EFLAASMTLEMDNVEKIKKFCQD------------ARQFNIQIMPPSVN-TPCVDF 828
                E L A M     N + + K  QD            AR F  + +P  +N      F
Sbjct: 1400 CLGHERLLAHMKEYKKNYDSLTKKEQDTYKDMKSVQEMYARGF--EFVPIDINKADASRF 1457

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            ++ D ++  SL +I G+G   A  ++EA  D PF S +DF  R    K    V+  L   
Sbjct: 1458 QIVDGKLMPSLCSIDGLGDKAAEAVVEAVKDGPFLSKDDFWQRTKVPKSVIDVMSDLGLL 1517

Query: 889  GAL 891
            G L
Sbjct: 1518 GDL 1520


>gi|269120698|ref|YP_003308875.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386]
 gi|268614576|gb|ACZ08944.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC 33386]
          Length = 1421

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 189/907 (20%), Positives = 345/907 (38%), Gaps = 217/907 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS----SGPI 155
            ++LV   EG + L EL+SR +L   G++  RI  S L+E     LI  +  S     G +
Sbjct: 589  MILVKNREGLKDLYELISRSHLDFFGERKPRIPKSMLKEKREHLLIASSANSVFRNDGEL 648

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY---RESQVVQLA-----YTH 207
             RA+    S    K  +  +  F D  Y+ +     Y       E + + +A     Y +
Sbjct: 649  VRAYLRGMS----KDEIEERADFYD--YIEIHPAANYIEMVNNGEMESLDIAMEMNKYFY 702

Query: 208  ELP------LVATNNSLFLSEEDYEAHDVLM---AVAHSTVVSQKDRPRVTPDHYLKNRS 258
            EL       +VAT ++ +L E +     VL+    + H +   + DR       Y +   
Sbjct: 703  ELGKKTGKIVVATGDAHYLEEWESVNRSVLILGSGMGHRSF--KHDRKL-----YFRTTD 755

Query: 259  EMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
            EM+  F+ L   EA E  +E   + + +++   PI   F   +   I+  EE        
Sbjct: 756  EMLDAFAFLGEKEAYEVVIENTNKLADMIERLKPIPDGFYPPK---IEGAEE-------- 804

Query: 317  AGLEVRLAQGAIAKGYHAQDY----RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
               EVR      AK  + ++      +R++ EL  I    F+  +LI    ++ +  N  
Sbjct: 805  ---EVREMTYNRAKKLYGENLPEILEKRIEHELEAIIGNGFAVLYLIAQKLVKKSLDNGY 861

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLR--------------------------------- 399
             VG  RGS   S+ AY + IT+++ +                                  
Sbjct: 862  LVG-SRGSVGSSIVAYMMEITEVNAMYPHYRCPNPECKHSEFTDMAGSGVDLPDKNCPKC 920

Query: 400  --------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                     S+ FE F+      +PD D++F  + + E+ RY +  +G + V +  T  +
Sbjct: 921  GTKYIKDGHSIPFEVFMGFKGDKVPDIDLNFSGEYQSEIHRYTEELFGKDHVFRAGTIST 980

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            L  + A   V +     Y +   + K                     R+A +        
Sbjct: 981  LAERNAFGYVKK-----YFEESGIHK---------------------RKAEIE------- 1007

Query: 512  LEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKA 566
              I++  EG  +    H  G+++   D+ + +  P+ +   D  ++   T F+   +++ 
Sbjct: 1008 -RIAKGCEGARKTTGQHPGGMIVLPSDKSIYEFTPIQKPANDKTAESITTHFDYHVMDEQ 1066

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK----------- 615
             L+K D LG    T L+     + Q    +D+  IP DD +   +  +            
Sbjct: 1067 -LVKLDILGHDDPTTLR-----ILQDLTGIDIYQIPLDDPKVLSIFNSTEALGVTQKDIG 1120

Query: 616  ---GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
               G+ GI +  +  +R+ L   +P    +++ +  L       ++ + N +   K  I 
Sbjct: 1121 SVIGSFGIPEFGTKFVREMLIETKPSSFAELVRISGLSHGT---DVWLNNAQDYVKAGIT 1177

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIA---QLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++             VI  ++ +M       L    + +  + +R+    K KE+ ++  
Sbjct: 1178 TLSE-----------VITVRDDIMNYLIDHGLDKSLAFTIMEFVRKGQPSKNKEKWEEY- 1225

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                   +K    K I     E   K   Y F K HA AY +++ + A+ K +YP+EF  
Sbjct: 1226 -------AKAMKEKNIKEWYIESCEKIK-YMFPKGHAVAYVMMAVRIAYFKVYYPLEFYT 1277

Query: 790  ASMTLEMDNVEKIKKF-----CQDARQF---------------------------NIQIM 817
            A +  ++D     K +      ++AR+                             I+++
Sbjct: 1278 AFLNRKVDGFSVTKMYKKLDELKEARKLLDEKMNLDVKEKGDLTLYEILIEMSHRGIELL 1337

Query: 818  PPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            P  +  +    F V D +I   L A+ G+G + A+ ++E      F SLED   R    K
Sbjct: 1338 PVDIYKSEASLFLVEDGKIRLPLVAVDGLGESVAKKVVEERKISEFISLEDILKRT---K 1394

Query: 877  LNRRVLE 883
            LN+ V+E
Sbjct: 1395 LNKTVVE 1401


>gi|255103311|ref|ZP_05332288.1| DNA polymerase III subunit alpha [Clostridium difficile QCD-63q42]
          Length = 677

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 119/574 (20%), Positives = 240/574 (41%), Gaps = 62/574 (10%)

Query: 168 EKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
           E+ +L  K  F +  ++ +Q H           V++L+  + + ++  N+S ++  E+ +
Sbjct: 148 EELILKLKNYFKNNFFLEVQSHPHKTQALHNKDVLELSNKYNIDIIHANDSHYIYPEESK 207

Query: 227 AHDVLMAVAHSTVVSQK----DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
                +         +     D P  + D + +   + V    ++  AL+NT+ I   C 
Sbjct: 208 YRTKFLKAKGINYPEEDGFILDYPN-SEDIFKRYEKQNVLTKQEVERALKNTL-IFDECE 265

Query: 283 FILQVHAPI-LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            I  ++  I LP         I K    EL  K +   E    +  I K     +Y   +
Sbjct: 266 EITLINDDIKLPS--------ISKNPNKEL--KEILNKEWLEKRKNIPKN-RWNEYLDAI 314

Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKK--NNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            +E ++I +     YF+I    +Q AK+  N +    GRGS    +    L +T+ID L 
Sbjct: 315 RYEFDIIEKTHMEDYFIIDYKIVQRAKQEYNGLLTKTGRGSAPSFIITNLLGLTEIDRLN 374

Query: 400 --FSLLFERFLNPDRM----SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
               L   RF++ +R+    S+PD D++   +  +  I+  ++  G E  A +I++  LQ
Sbjct: 375 APVPLFPTRFMSVERILSAKSLPDIDLN--AEDAEPFIQATRDLLGEENCAWMISYKPLQ 432

Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             +A R   +A  M  S+ D + K          +L    +D  +++          +++
Sbjct: 433 DASAFRLWCKANDMKLSEYDEVAK----------NLDKYTNDVFWKD----------VIK 472

Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
            S+   G+    S     ++I DRP+ + V + +    D      +  + +K   +K D+
Sbjct: 473 ESKVFVGVVESVSFSPCSMLIYDRPIDEEVGLLK--TKDGVCCNIDGYYCDKYKYLKNDY 530

Query: 574 LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
           L +K  +L++K+ + LA   +     L    D +TY +   K T  I Q++S        
Sbjct: 531 LTVKVWSLIRKTCE-LANISIPTIEELNILLDAKTYDIYKDKLTCTINQVDSDYATNLAS 589

Query: 634 GMQPDCIEDIIALVSLYRPG---PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
             +   + +  A V+  RPG    +DN +        +E   +    +D +L+++   ++
Sbjct: 590 KYKISSVAETSAFVASIRPGFASLLDNFI-------NRESYTTNVKELDILLEDSYHYLM 642

Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           YQE +M+    L        D++ +   + ++++
Sbjct: 643 YQESIMKYLIWLGIEESESYDIINKIKKRDLRKK 676


>gi|302874658|ref|YP_003843291.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
 gi|302577515|gb|ADL51527.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
          Length = 1443

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 188/903 (20%), Positives = 328/903 (36%), Gaps = 202/903 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I+LL     G + L +LVS    LD   +  R+  S ++E   EG+I+ +   +G + + 
Sbjct: 621  IILLSKNQVGIKNLYKLVS-FSSLDNFHRKPRLPRSLIEEY-REGIIIGSACEAGELYKN 678

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
                 S    + ++ F      + +  +   +     +  +  RE   ++  L   +  P
Sbjct: 679  ILQGQSDDELEPIINFYDYLEIQPICNNFFLIEKGNVKDENELREINRRIYNLGQKYNKP 738

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
            +VAT +  FL E D     +L+A    +    +      P  Y K   EM+  FS L E 
Sbjct: 739  VVATGDIHFLDERDGVFRKILLAGQGFSDAENQ------PPLYFKTTEEMLREFSYLGEK 792

Query: 270  -----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
                  ++N  +IA     +  +     P  IE   D+I+     E+  K V        
Sbjct: 793  ACYEVVIKNPNDIAESVETVKPIPDETYPPKIEGAEDEIR-----EMTMKKVH------- 840

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +I      +  ++RLD ELN I    ++  +LI    +  +  +   VG  RGS   S
Sbjct: 841  --SIYGDPLPEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSYSDGYLVG-SRGSVGSS 897

Query: 385  VTAYALTITDIDPL-----------------------------------------RFSLL 403
              A    IT+++ L                                            + 
Sbjct: 898  FVATMSGITEVNGLPPHYVCPNCKNSEFIMDGSVNCGADLPEKNCPKCGSEYIREGHDIP 957

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D    PD D++F  D + ++ +Y +  +G     +  T G++  K A   V +
Sbjct: 958  FETFLGFDGDKEPDIDLNFSGDNQGDIHKYTEELFGKGHTFKAGTIGTIAEKTAYGFVKK 1017

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             L                                 +E R++   V+RL   +Q   G+ R
Sbjct: 1018 YLDE-------------------------------KEMRVSVAEVERL---TQGCTGVKR 1043

Query: 524  HASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
             +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D LG   
Sbjct: 1044 TSGQHPGGIMVVPSDNEIYNFTPVQHPADDPNSDIITTHFDYHSI-SGRLLKLDILGHDD 1102

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE------SSGM---- 628
             T+L+     + Q    +D   +P +D     L T+   LG+ + E      S G+    
Sbjct: 1103 PTILR-----MLQDLTGIDPKTLPLNDAAVLSLFTSPDALGVNREELECEVGSYGLPEFG 1157

Query: 629  ----RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
                RQ L   QP    D++ +  L       ++ + N +   KE   ++   I     +
Sbjct: 1158 TKFVRQMLVDTQPKTFSDLVRISGLSHG---TDVWLNNAQYFIKEGYTTLRDCISTR-DD 1213

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK--ERFISGASKNGIS 742
                +IYQ    + A     + + E     + +  + +E+M + K  E +I    K    
Sbjct: 1214 IMVYLIYQGLPEKDA-----FVIMEKVRKGKGLSPENEEQMREHKVPEWYIESCKK---- 1264

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL-------- 794
                            Y F K HA AY +++ + A+ K H+P  + A  +T+        
Sbjct: 1265 --------------IKYMFPKGHAVAYCMMAVRIAYFKVHHPKAYYATYLTVRGTDFDGN 1310

Query: 795  --------------EMDNVEKIK----------KFCQDARQFNIQIMPPSV-NTPCVDFK 829
                          E+++   I           + C +  +  IQ +   +  +  V F 
Sbjct: 1311 LIIKGEGVIRQKIHELNSSNDISVKDKGLLTILEICYEMNKRGIQFLKIDLYKSDPVKFT 1370

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +  + +   + A+ GVG   A+ I EA     F S ED   R    K+++ V+E L   G
Sbjct: 1371 IEGDNLRMPINALAGVGENAAKSIAEARKGGEFLSKEDLRIRA---KVSKSVIEVLNEHG 1427

Query: 890  ALD 892
             L+
Sbjct: 1428 CLE 1430


>gi|307690728|ref|ZP_07633174.1| DNA polymerase III PolC [Clostridium cellulovorans 743B]
          Length = 1439

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 188/903 (20%), Positives = 328/903 (36%), Gaps = 202/903 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I+LL     G + L +LVS    LD   +  R+  S ++E   EG+I+ +   +G + + 
Sbjct: 617  IILLSKNQVGIKNLYKLVS-FSSLDNFHRKPRLPRSLIEEY-REGIIIGSACEAGELYKN 674

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
                 S    + ++ F      + +  +   +     +  +  RE   ++  L   +  P
Sbjct: 675  ILQGQSDDELEPIINFYDYLEIQPICNNFFLIEKGNVKDENELREINRRIYNLGQKYNKP 734

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
            +VAT +  FL E D     +L+A    +    +      P  Y K   EM+  FS L E 
Sbjct: 735  VVATGDIHFLDERDGVFRKILLAGQGFSDAENQ------PPLYFKTTEEMLREFSYLGEK 788

Query: 270  -----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
                  ++N  +IA     +  +     P  IE   D+I+     E+  K V        
Sbjct: 789  ACYEVVIKNPNDIAESVETVKPIPDETYPPKIEGAEDEIR-----EMTMKKVH------- 836

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +I      +  ++RLD ELN I    ++  +LI    +  +  +   VG  RGS   S
Sbjct: 837  --SIYGDPLPEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSYSDGYLVG-SRGSVGSS 893

Query: 385  VTAYALTITDIDPL-----------------------------------------RFSLL 403
              A    IT+++ L                                            + 
Sbjct: 894  FVATMSGITEVNGLPPHYVCPNCKNSEFIMDGSVNCGADLPEKNCPKCGSEYIREGHDIP 953

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D    PD D++F  D + ++ +Y +  +G     +  T G++  K A   V +
Sbjct: 954  FETFLGFDGDKEPDIDLNFSGDNQGDIHKYTEELFGKGHTFKAGTIGTIAEKTAYGFVKK 1013

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             L                                 +E R++   V+RL   +Q   G+ R
Sbjct: 1014 YLDE-------------------------------KEMRVSVAEVERL---TQGCTGVKR 1039

Query: 524  HASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
             +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D LG   
Sbjct: 1040 TSGQHPGGIMVVPSDNEIYNFTPVQHPADDPNSDIITTHFDYHSI-SGRLLKLDILGHDD 1098

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE------SSGM---- 628
             T+L+     + Q    +D   +P +D     L T+   LG+ + E      S G+    
Sbjct: 1099 PTILR-----MLQDLTGIDPKTLPLNDAAVLSLFTSPDALGVNREELECEVGSYGLPEFG 1153

Query: 629  ----RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
                RQ L   QP    D++ +  L       ++ + N +   KE   ++   I     +
Sbjct: 1154 TKFVRQMLVDTQPKTFSDLVRISGLSHG---TDVWLNNAQYFIKEGYTTLRDCISTR-DD 1209

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK--ERFISGASKNGIS 742
                +IYQ    + A     + + E     + +  + +E+M + K  E +I    K    
Sbjct: 1210 IMVYLIYQGLPEKDA-----FVIMEKVRKGKGLSPENEEQMREHKVPEWYIESCKK---- 1260

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL-------- 794
                            Y F K HA AY +++ + A+ K H+P  + A  +T+        
Sbjct: 1261 --------------IKYMFPKGHAVAYCMMAVRIAYFKVHHPKAYYATYLTVRGTDFDGN 1306

Query: 795  --------------EMDNVEKIK----------KFCQDARQFNIQIMPPSV-NTPCVDFK 829
                          E+++   I           + C +  +  IQ +   +  +  V F 
Sbjct: 1307 LIIKGEGVIRQKIHELNSSNDISVKDKGLLTILEICYEMNKRGIQFLKIDLYKSDPVKFT 1366

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +  + +   + A+ GVG   A+ I EA     F S ED   R    K+++ V+E L   G
Sbjct: 1367 IEGDNLRMPINALAGVGENAAKSIAEARKGGEFLSKEDLRIRA---KVSKSVIEVLNEHG 1423

Query: 890  ALD 892
             L+
Sbjct: 1424 CLE 1426


>gi|188589600|ref|YP_001920613.1| DNA polymerase III PolC [Clostridium botulinum E3 str. Alaska E43]
 gi|188499881|gb|ACD53017.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum E3 str. Alaska E43]
          Length = 1452

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 194/906 (21%), Positives = 329/906 (36%), Gaps = 207/906 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I++L  T  G + L +L+S+ ++ D   +  R   + L E   EGLI+ +   +G + +A
Sbjct: 631  IIILAKTQAGLKNLYKLISKSHI-DNFFRRPRTPKTLLSEF-REGLIIGSACEAGEVYKA 688

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
                 S    K ++ F      + +  +   +     +  +  RE   ++ +L      P
Sbjct: 689  VLEGRSDDEIKEIIEFYDYVEIQPIANNNFLIAKGSVKDEEELREINRKIYRLGKECNKP 748

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
             VAT +  FL+  D     ++MA       S  D     P  YLK   EM+  FS L + 
Sbjct: 749  TVATGDVHFLNPNDEAFRKIIMA---GQGFSDADN---QPPLYLKTTEEMLKEFSYLGKD 802

Query: 270  -ALENTVEIARRCSFILQVHAPI----LPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
             A E  ++  ++ S  + V  PI     P  IE   +DI+    N   NKA         
Sbjct: 803  IAKEVVIDNPKKISDSIGVLKPIPDETYPPKIEGAEEDIK----NMTLNKA--------- 849

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              AI      +  ++RLD ELN I    ++  +LI    +  + ++   VG  RGS   S
Sbjct: 850  -HAIYGEVLPEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSTEDGYLVG-SRGSVGSS 907

Query: 385  VTAYALTITDIDPL-----------------------------------------RFSLL 403
              A    IT+++ L                                            + 
Sbjct: 908  FVATMSDITEVNGLPPHYVCPKCKKSEFFLDGSISSGADLPDKNCPHCDVPYIKDGHDIP 967

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  +    PD D++F  + +  V RY +  +G     +  T G++  K A   V +
Sbjct: 968  FETFLGFEGDKEPDIDLNFSGEYQGVVHRYTEVLFGKGHTFKAGTIGTIAEKTAYGYVKK 1027

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             L                                 RE   +   ++RL   +    G+ R
Sbjct: 1028 YLDE-------------------------------REIITSSAEIERL---TLGCTGIKR 1053

Query: 524  HASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                H  GI++   D  +    P+     D  +D+  T F+   I    L+K D LG   
Sbjct: 1054 TTGQHPGGIMVVPADNEIYNFCPIQHPADDNDTDVVTTHFDYHSIS-GRLLKLDILGHDD 1112

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE------SSGM---- 628
             T+L+     + Q    +D   IP +D +   L T+   LG+ + E      S G+    
Sbjct: 1113 PTVLR-----MLQDLTGLDPKTIPLNDEKVLSLFTSPEALGVTKEELECEVGSYGLPEFG 1167

Query: 629  ----RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI----DP 680
                R  L   QP    D++ +  L       ++ + N +   KE   ++   I    D 
Sbjct: 1168 TKFVRGMLVDTQPKTFADLVRISGLSHG---TDVWLNNAQYYIKEGFTTLRDCIATRDDI 1224

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            M+      +  +     + ++  G  LSE D       K +KE   +  E +I    K  
Sbjct: 1225 MVYLMYKGLPPKSAFTIMEKVRKGKGLSEDD------EKLMKEH--EVPEWYIGSCKK-- 1274

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
                              Y F K HA AY +++ + A+ K +YP  + A   T+  D+ +
Sbjct: 1275 ----------------IKYMFPKGHAVAYVMMAVRIAYYKVYYPEAYYATYFTVRADDFD 1318

Query: 801  ---------------------------------KIKKFCQDARQFNIQIMPPSV-NTPCV 826
                                              + + C +A +  ++ +   +  +  V
Sbjct: 1319 ANLVCLGDGAVHTKLQELYELGNNASVKDKGLITVLELCFEAYKRGVKFLRVDLYKSEGV 1378

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             FK+ D  +   L ++ GV    A++I+EA     F S ED   R     +++ V+ESL 
Sbjct: 1379 KFKIEDGALRLPLNSLPGVADNAAKNIVEARVKGEFISKEDLRIRAG---VSKTVIESLS 1435

Query: 887  FAGALD 892
              G LD
Sbjct: 1436 NHGCLD 1441


>gi|251779220|ref|ZP_04822140.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum E1 str. 'BoNT E Beluga']
 gi|243083535|gb|EES49425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum E1 str. 'BoNT E Beluga']
          Length = 1452

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 193/906 (21%), Positives = 330/906 (36%), Gaps = 207/906 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I++L  T  G + L +L+S+ ++ D   +  R   + L E   EGLI+ +   +G + +A
Sbjct: 631  IIILAKTQAGLKNLYKLISKSHI-DNFFRRPRTPKTLLSEF-REGLIIGSACEAGEVYKA 688

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
                 S    K ++ F      + +  +   +     +  +  RE   ++ +L      P
Sbjct: 689  VLEGRSDDEIKEIIEFYDYVEIQPIANNNFLIAKGSVKDEEELREINRKIYRLGKECNKP 748

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
             VAT +  FL+  D     ++MA       S  D     P  YLK   EM+  FS L + 
Sbjct: 749  TVATGDVHFLNPNDEAFRKIIMA---GQGFSDADN---QPPLYLKTTEEMLKEFSYLGKD 802

Query: 270  -ALENTVEIARRCSFILQVHAPI----LPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
             A E  ++  ++ S  + V  PI     P  IE   +DI+    N   NKA         
Sbjct: 803  IAKEVVIDNPKKISDSIGVLKPIPDETYPPKIEGAEEDIK----NMTLNKA--------- 849

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              AI      +  ++RLD ELN I    ++  +LI    +  + ++   VG  RGS   S
Sbjct: 850  -HAIYGEVLPEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSTEDGYLVG-SRGSVGSS 907

Query: 385  VTAYALTITDIDPL-----------------------------------------RFSLL 403
              A    IT+++ L                                            + 
Sbjct: 908  FVATMSDITEVNGLPPHYVCPKCKKSEFFLDGSISSGADLPNKNCPHCDVPYIKDGHDIP 967

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  +    PD D++F  + +  V RY +  +G     +  T G++  K A   V +
Sbjct: 968  FETFLGFEGDKEPDIDLNFSGEYQGVVHRYTEVLFGKGHTFKAGTIGTIAEKTAYGYVKK 1027

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             L                                 RE   +   ++RL   +    G+ R
Sbjct: 1028 YLDE-------------------------------REIITSSAEIERL---TLGCTGIKR 1053

Query: 524  HASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                H  GI++   D  +    P+     D  +D+  T F+   I    L+K D LG   
Sbjct: 1054 TTGQHPGGIMVVPADNEIYNFCPIQHPADDNDTDVVTTHFDYHSIS-GRLLKLDILGHDD 1112

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE------SSGM---- 628
             T+L+     + Q    +D   IP +D +   L T+   LG+ + E      S G+    
Sbjct: 1113 PTVLR-----MLQDLTGLDPKTIPLNDEKVLSLFTSPEALGVTKEELECEVGSYGLPEFG 1167

Query: 629  ----RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI----DP 680
                R  L   QP    D++ +  L       ++ + N +   KE   ++   I    D 
Sbjct: 1168 TKFVRGMLVDTQPKTFADLVRISGLSHG---TDVWLNNAQYYIKEGFTTLRDCIATRDDI 1224

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            M+      +  +     + ++  G  LSE D       +K+ +E +   E +I    K  
Sbjct: 1225 MVYLMYKGLPPKSAFTIMEKVRKGKGLSEDD-------EKLMKEHE-VPEWYIGSCKK-- 1274

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
                              Y F K HA AY +++ + A+ K +YP  + A   T+  D+ +
Sbjct: 1275 ----------------IKYMFPKGHAVAYVMMAVRIAYYKVYYPEAYYATYFTVRADDFD 1318

Query: 801  ---------------------------------KIKKFCQDARQFNIQIMPPSV-NTPCV 826
                                              + + C +A +  ++ +   +  +  V
Sbjct: 1319 ANLVCLGDGAVHTKLQELYELGNNASVKDKGLITVLELCFEAYKRGVKFLRVDLYKSEGV 1378

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             FK+ D  +   L ++ GV    A++I+EA     F S ED   R     +++ V+ESL 
Sbjct: 1379 KFKIEDGALRLPLNSLPGVADNAAKNIVEARVKGEFISKEDLRIRAG---VSKTVIESLS 1435

Query: 887  FAGALD 892
              G LD
Sbjct: 1436 NHGCLD 1441


>gi|253682510|ref|ZP_04863307.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum D str. 1873]
 gi|253562222|gb|EES91674.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum D str. 1873]
          Length = 1443

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 194/911 (21%), Positives = 336/911 (36%), Gaps = 216/911 (23%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +++L     G + L +L+S   L D   +  R+  S +++   EGLI+ +   +G + +A
Sbjct: 621  LIILAKNQVGLKNLYKLISYSNL-DYFFRKPRMPKSLIEQY-KEGLIIGSACEAGEVYKA 678

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVN--LQRHRGYDRYRES------QVVQLAYTHELP 210
                 SQ   K ++ F      +  +N      +G  +  E       ++  L   + LP
Sbjct: 679  VLEGKSQEELKEIIKFYDYLEIQPIMNNEFMLKKGIVKSEEQLKEVNRKIYNLGKENGLP 738

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
            +VAT +  FL  +D +  ++LM          +D+P +    YLK  +EM+  F  L + 
Sbjct: 739  IVATGDVHFLDPKDAKFREILM--KGQGFSDAEDQPPL----YLKTTNEMLKEFEYLGKD 792

Query: 270  -----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
                  + N  +IA     I  +     P  IE   +DI+    N    KA +     + 
Sbjct: 793  ECKEVVIYNPQKIAEEIEVIKPIPDETFPPKIEGAEEDIR----NMTLEKAHS-----IY 843

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
               + K  H      RL+ ELN I    ++  +LI    +  + K+   VG  RGS   S
Sbjct: 844  GNPLPKVVH-----DRLEKELNSIINNGYAVLYLIAHKLVAKSLKDGYLVG-SRGSVGSS 897

Query: 385  VTAYALTITDIDPL-----------------------------------------RFSLL 403
            + A    IT+++ L                                            + 
Sbjct: 898  LVATMSDITEVNGLPPHYVCPNCKNSEFFTDGSVSSGADLPPKNCPNCGSEYNRNGHDIP 957

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  +    PD D++F  D + ++ RY +  +G     +  T G++  K A   V +
Sbjct: 958  FETFLGFNGDKEPDIDLNFSGDNQGDIHRYTEVLFGKGHTFKAGTIGTIADKTAYGFVKK 1017

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             L                D  + +  QA                ++RL   +Q   G+ R
Sbjct: 1018 YL----------------DEKNLIVSQA---------------EIERL---TQGCTGVKR 1043

Query: 524  HASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
             +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D LG   
Sbjct: 1044 TSGQHPGGIMVVPSDNEIYNFCPIQHPADDADSDIITTHFDYHSIS-GRLLKLDILGHDD 1102

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLE 624
             T+L+   D        +D   IP  D +   L T+               G  GI +  
Sbjct: 1103 PTVLRMLKDITG-----LDPITIPIGDEKVLSLFTSPEALGVTAEELECPVGCYGIPEFG 1157

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +  +RQ L   QP    D++ +  L       ++ + N +   KE   ++          
Sbjct: 1158 TKFVRQMLVDTQPKTFSDLVRISGLSHGT---DVWLNNAQYFIKEGYTTL---------- 1204

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM--GKKIKEEMD------KQKERFISGA 736
             +  I  ++ +M +  L  G    EA  +   +  GK + EE +      K  + +I   
Sbjct: 1205 -KDCIATRDDIM-VYLLHKGLPPKEAFTIMEKVRKGKGLTEEHEALMREHKVPDWYIESC 1262

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE- 795
             K                    Y F K HA AY +++ + A+ K +YP  + A   T+  
Sbjct: 1263 KK------------------IKYMFPKGHAVAYVMMAVRIAYYKVYYPQAYYATYFTVRG 1304

Query: 796  MDN----------------VEKIKKFCQDARQ-----------------FNIQIMPPSV- 821
            +D+                +++I     +A Q                  NI+ +   + 
Sbjct: 1305 IDDFDADLIVKGEDVVKRKMDEINALGNNATQKDKGLLTNLELAFEMYKRNIKFLKVDIY 1364

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
             +    F + ++ I   ++A+ GVGT  A+ I EA  D  F S ED   R    K+++ V
Sbjct: 1365 KSHPTKFLIENDDIRPPISALAGVGTNAAKSIAEAKKDGEFISKEDLRKR---SKVSKTV 1421

Query: 882  LESLVFAGALD 892
            +E+L   G L+
Sbjct: 1422 IEALSEHGCLE 1432


>gi|229918664|ref|YP_002887310.1| DNA polymerase III, subunit alpha [Exiguobacterium sp. AT1b]
 gi|229470093|gb|ACQ71865.1| DNA polymerase III, alpha subunit [Exiguobacterium sp. AT1b]
          Length = 1430

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 165/808 (20%), Positives = 292/808 (36%), Gaps = 227/808 (28%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV--AHSTVVSQKDRPRVTPDHYLKN 256
            +++++A   ELP+ AT N  +L   D    ++L+      + + ++K+ P      + + 
Sbjct: 707  RIIRVAEKAELPVCATGNVHYLDRSDRSYREILIRTQGGANFINTRKELPHA----HFRT 762

Query: 257  RSEMVSIFSDLPEALENTVEIARRCSFILQVHA-PILPRFIEKECDDIQKEEENELRNKA 315
              EM+  F  L + L   + I    +   Q+ +  I+P               ++L    
Sbjct: 763  TKEMMEEFKFLGDDLAREIVITNPNAIADQIESIQIIP---------------DDLYTPK 807

Query: 316  VAGL--EVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            + G   EVR     +A+  +  +  +    RL+ EL  I    F+  +LI    ++ +  
Sbjct: 808  IEGADDEVRNMSYDMARSIYGDELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLD 867

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPL------------------------------- 398
            +   VG  RGS   S+ A    IT+++PL                               
Sbjct: 868  DGYLVG-SRGSVGSSLVATMTEITEVNPLPPHYVCPNCQHSHFFNDGSVGSGYDLPDKEC 926

Query: 399  ----------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
                         + FE FL      +PD D++F  + +     Y +  +G E V +  T
Sbjct: 927  PECGTWYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHAYTKVLFGEEYVYRAGT 986

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
             G++  K A           Y  V                  A  +D  +R A      V
Sbjct: 987  IGTIADKTA-----------YGYVKGY---------------ATENDKIYRNAE-----V 1015

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV------------- 555
            DRL+     + G+ R    H  GI++        VP Y D+    P+             
Sbjct: 1016 DRLV---SGVTGVKRTTGQHPGGIIV--------VPDYMDIADISPIQYPADDNSSEWKT 1064

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT- 614
            T F+   I    L+K D LG    T+++   D        +D   IP DD     + ++ 
Sbjct: 1065 THFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPTVMKIFSSP 1118

Query: 615  -------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DN 657
                          GTLGI +  +  +RQ LE  +P    +++ +  L     +     N
Sbjct: 1119 EVLGVTPEQIESKTGTLGIPEFGTKFVRQMLEETKPSTFSELVQISGLSHGTDVWLGNAN 1178

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
             ++YN     K+ I                +++Y    +  A L   ++    + +R+  
Sbjct: 1179 ELIYNGTCELKDVIGC-----------RDDIMVY----LIYAGLEPSFAFKIMESVRK-- 1221

Query: 718  GKKIKEEMDKQ------KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            GK + EEM+ +       E +IS   K                    Y F K+HA AY +
Sbjct: 1222 GKGLTEEMESEMRENDVPEWYISSCKK------------------IKYMFPKAHATAYVL 1263

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQDARQ--FNIQIMPPS 820
            ++ + A+ K H+P+ + A   T+   +          + ++K   D R+  F+       
Sbjct: 1264 MAVRIAYFKVHHPILYYATYFTVRAGDFDLSAMIKGPQAVRKAMSDIREKGFDATAKDKG 1323

Query: 821  VNT-----------------------PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
            ++T                          +F + DN +     A+ G+GT  A+ I+EA 
Sbjct: 1324 LHTVLELALEMLERGMKFQNIDLYRSSATEFLIEDNTLIPPFNAVDGLGTNAAKAIVEAR 1383

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             +  F S ED   R    KL++ V+E+L
Sbjct: 1384 EEGQFLSKEDLRKRA---KLSKTVIETL 1408


>gi|220931624|ref|YP_002508532.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
 gi|219992934|gb|ACL69537.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
          Length = 1397

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 162/801 (20%), Positives = 301/801 (37%), Gaps = 203/801 (25%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            Q+ +L      P+VAT +  FL  ED     VL A       +++  P      Y +  +
Sbjct: 681  QIYKLGKKLNKPVVATCDVHFLDPEDDIYRKVLQA-GQGYDEAEEQAPL-----YFRTTN 734

Query: 259  EMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK---EEEN 309
            EM+  FS L +       +EN  +I+ +   +  +   +    IE   D I+K   +  +
Sbjct: 735  EMLEEFSYLGKKAAREVVIENPAKISDQIEELKPLPDGLFAPEIEGANDQIRKMTYQRAH 794

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL    +  +                   +RL+ EL  I    ++  +LI    ++ + +
Sbjct: 795  ELYGDPLPSI-----------------IEERLEKELKAIIDNGYAVIYLISHKLVKKSLE 837

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPL------------------------------- 398
            +   VG  RGS   S+ A    IT+++PL                               
Sbjct: 838  DGYLVG-SRGSVGSSLVATMCEITEVNPLPPHYRCPRCKQVEFVNDENTGVGADLPDKNC 896

Query: 399  ----------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
                       F + FE F+  +   +PD D++F  + + E+ +Y +  +G   V +  T
Sbjct: 897  PHCGTRYVKDGFDIPFEVFMGFEGDKVPDIDLNFSGEYQGEIHKYTEELFGSNYVFRAGT 956

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
              ++  + A   V                            +   DD+  R   L    +
Sbjct: 957  ISTIAKRTAFGFV----------------------------KGYLDDNGLR---LNKAEI 985

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYR---DVRSDLPVTQFNMKWI 563
            DRL+   +   G+ R    H  G+++  +   +    P+ R   D  +D+  T F+   I
Sbjct: 986  DRLV---KGCTGVKRTTGQHPGGLMVVPKAYDIHDFSPIQRPANDQETDVITTHFDYHSI 1042

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL----------- 612
                ++K D LG    T ++   D        V+   IP DD +T  +            
Sbjct: 1043 -SGRILKLDLLGHDDPTTIRMLQDLTG-----VNPHDIPLDDPDTMDIFSSTDPLGVSPE 1096

Query: 613  ---TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR----K 665
               T  GTLGI +  +S +RQ L   +P    +++ +  L         V  NN     K
Sbjct: 1097 EIGTVVGTLGIPEFGTSFVRQMLVDTRPTTFAELVRISGLSH----GTDVWLNNAQDLIK 1152

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GK ++  +  + D ++        Y  Q      L  G S    + +R+  G      +
Sbjct: 1153 SGKARLSEVISVRDDIMN-------YLIQ----KGLEPGKSFWIMEHVRKGKG------L 1195

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             +++E+++   +          + +    K   Y F K+HAAAY +++++ A+ K HYP 
Sbjct: 1196 TEEEEQYMREHN--------VPDWYIESCKKIKYMFPKAHAAAYVMMAFRIAYFKVHYPE 1247

Query: 786  EFLAASMTLEMDNVE------------KIKKFCQ---------------------DARQF 812
             F     T++ D+ +            ++KK  +                     +A   
Sbjct: 1248 AFYTTYFTIKADDFDAHMINQGYDHIIEVKKNLEARGNDMTAKEKGILTVLEIVIEAMAR 1307

Query: 813  NIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
             I+ +P  +  +    FK+ D  +   L +++G+G++ A  I     + PF S+ED  +R
Sbjct: 1308 GIEFLPVDLYKSDATKFKLTDKGLLPPLVSLQGLGSSAAEKIAVTRQEAPFSSVEDLVNR 1367

Query: 872  VDSKKLNRRVLESLVFAGALD 892
                ++++ V+E L   G+LD
Sbjct: 1368 T---RISKTVVEILEEHGSLD 1385


>gi|309807955|ref|ZP_07701883.1| PHP domain protein [Lactobacillus iners LactinV 01V1-a]
 gi|308168806|gb|EFO70896.1| PHP domain protein [Lactobacillus iners LactinV 01V1-a]
          Length = 335

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 163/353 (46%), Gaps = 32/353 (9%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6   LQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
           QL I+      + N+ +        ++++     GYQ ++ L S + L+ + GK+ + + 
Sbjct: 66  QLRIN-----GLINENQN-----FDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRHR 190
           L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
               Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +  +D   +T 
Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDVFLQEVLQSIDDNQSI--RDGYELTL 231

Query: 250 ---PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               +HYLK + ++   ++ L   EAL NT ++    +  ++   P LP+FI+ + D   
Sbjct: 232 KHVGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD--- 288

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                 L + A+ GL+ +  +  I        Y  RL +EL +I  M F+ YF
Sbjct: 289 -TSYEFLHHLAMTGLQAKFNKHDIPA-----KYLNRLKYELKIIDEMGFNDYF 335


>gi|73662813|ref|YP_301594.1| DNA polymerase III PolC [Staphylococcus saprophyticus subsp.
            saprophyticus ATCC 15305]
 gi|123642441|sp|Q49X49|DPO3_STAS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|72495328|dbj|BAE18649.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
            saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 1438

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 193/935 (20%), Positives = 347/935 (37%), Gaps = 232/935 (24%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  ++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NTSLSNEDAYKRARPNHVTLIVQNQDGLKNLFKIVS-ASLVQYYYRTPRIPRSLLDEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL----------QRH 189
            EG+++ +    G +  A         E+  +   F ++    LY +L            H
Sbjct: 655  EGILVGSACDEGEVFTAVMQKDQSQVERIAKYYDFIEVQPPALYQDLIDRELVRDNETLH 714

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              Y+R     +++    + +P++AT N+ +L+E D  A  +L+A      +++   P+  
Sbjct: 715  EIYNR-----LIRAGDVNNIPVIATGNAHYLNEHDAIARKILIAAQPGNPLNRSTLPKA- 768

Query: 250  PDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPIL-PRFIEKECDD 302
               + +   EM+     L E       ++NT ++A +   ++ +   +  PR        
Sbjct: 769  ---HFRTTDEMLDELHFLGEEKAYELVVQNTNDLADKIERVVPIKDELFTPRM------- 818

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFL 358
               E  NE         E+R      AK  +  D  Q    RL+ EL  I    FS  +L
Sbjct: 819  ---EGANE---------EIREMSYDNAKALYGDDLPQIVIDRLEKELESIIGNGFSVIYL 866

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL-------------------- 398
            I    ++ +  +   VG  RGS   S  A    IT+++PL                    
Sbjct: 867  ISQRLVKKSLNDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPECKQSEFFDDGSV 925

Query: 399  --RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
               F L                    FE FL      +PD D++F  + + E   Y +  
Sbjct: 926  GSGFDLPDKKCESCGCDLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPEAHNYTKEL 985

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G ++V +  T G++  K A   V   L               ND       Q I     
Sbjct: 986  FGEDKVFRAGTIGTVAEKTAFGFVKGYL---------------ND-------QGI----- 1018

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-- 555
                R A+  +DRL+   +   G+ R    H  GI++        VP Y D+    PV  
Sbjct: 1019 --HKRGAE--IDRLV---KGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPVQF 1063

Query: 556  -----------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                       T F+   I    ++K D LG    T+++     + Q    +D   IP D
Sbjct: 1064 PADDQGSSWMTTHFDFHSIHD-NVLKLDILGHDDPTMIR-----MLQDLSGIDPKTIPVD 1117

Query: 605  DHETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            D ET                +L   GT G+ +  +  +RQ LE  +P    +++ +  L 
Sbjct: 1118 DKETMGIFSSPEPLGVTSDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVRISGLS 1177

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
                +      +  ++GK  + S+    D        +++Y    +    L    +    
Sbjct: 1178 HGTDVWLGNAQDLIRSGKCDLASVICCRD-------DIMVY----LMYNGLEPSLAFKTM 1226

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + +R+  GK + ++M       +     N +      + +    +   Y F K+HAAAY 
Sbjct: 1227 EFVRK--GKGLTDDM-------VEAMVDNEVP-----DWYLDSCRKIKYMFPKAHAAAYV 1272

Query: 771  VISYQTAWMKTHYPVEFLAASMTLE---------------------------MDNVEKIK 803
            +++ + A+ K HYP+ + A+  T+                            MD  +K K
Sbjct: 1273 LMAVRIAYFKVHYPLYYYASYFTVRASDFDLISMIKDKESIRNTVNDMYSRYMDLAKKEK 1332

Query: 804  ------KFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                  +   +  Q   ++ P S+  +   +F +  + +     A+ G+G   A+ I+EA
Sbjct: 1333 DTLTVLEIMNEMAQRGYRMQPISLEKSKAFEFIIEGDTLIPPFIAVPGLGENVAQRIVEA 1392

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              + PF S ED   +     L+++V+E L   G+L
Sbjct: 1393 RDEGPFLSKEDLNKKA---GLSQKVIEYLDELGSL 1424


>gi|125973511|ref|YP_001037421.1| DNA polymerase III PolC [Clostridium thermocellum ATCC 27405]
 gi|125713736|gb|ABN52228.1| DNA polymerase III catalytic subunit, PolC type [Clostridium
            thermocellum ATCC 27405]
          Length = 1442

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 190/906 (20%), Positives = 329/906 (36%), Gaps = 209/906 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++LV    G + L ++VS+ +L +   +  R+    L  +  EGLI+ +   +G + RA 
Sbjct: 621  IILVKNYVGLRNLYKIVSKTHL-EYFHKRPRLPRKLLM-MHREGLILGSACEAGELYRAI 678

Query: 160  FFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPL 211
              N  +    R++ F      + L  +R  V   +    +  +    ++V L   +  P+
Sbjct: 679  LENKDEDEISRIVKFYDYLEIQPLGNNRFLVESGKVNSEEDLKNINRKIVALGEKYNKPV 738

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            VAT +  F+  +D     +LMA    +     D     P  Y +   EM+  F  L    
Sbjct: 739  VATCDVHFMDPQDEVFRRILMAGQGFS-----DADNQAP-LYFRTTDEMLEEFEYLGREK 792

Query: 270  ----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
                 + NT  IA  C  IL +     P  IE   ++I+   EN+ R             
Sbjct: 793  CYEVVVTNTNLIADMCEDILPIPEGTFPPKIEGAEEEIRMLAENKARE------------ 840

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
              I      +   +R++ ELN I +  FS  ++I    +  +  +   VG  RGS   S 
Sbjct: 841  --IYGDPLPEIVEKRMEKELNSIIKNGFSVMYIIAQKLVWKSLSDGYLVG-SRGSVGSSF 897

Query: 386  TAYALTITDIDPL-----------------------------------------RFSLLF 404
             AY + IT+++ L                                          + + F
Sbjct: 898  VAYLIGITEVNSLPPHYICENCKYSEFIEDGSYGCGFDMPEKECPRCGKILKKDGYDIPF 957

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  +    PD D++F  + +    +Y +  +G   V +  T G++  K A   V   
Sbjct: 958  ETFLGFEGDKEPDIDLNFSGEYQPIAHKYTEELFGVGHVYRAGTIGTIAEKTAYGFVKNY 1017

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L                             D R   A  A+  ++RL+   +   G+ R 
Sbjct: 1018 L-----------------------------DERGIVATNAE--INRLV---KGCTGVKRT 1043

Query: 525  ASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  G++I   DR + +  P+     D  S    T F+   I    L+K D LG    
Sbjct: 1044 TGQHPGGVMIVPQDREIYEFCPIQYPADDPDSGTITTHFDYHSI-SGRLLKLDILGHDDP 1102

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLES 625
            T+++   D        V+   IP  +  T  + ++               GT  I +  +
Sbjct: 1103 TVIKMLEDLTG-----VNARTIPIGEKRTMGIFSSTEPLGIRPEDINCPVGTFAIPEFGT 1157

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
              +RQ L   +P    ++I +  L         V  NN ++          L+   +   
Sbjct: 1158 KFVRQMLVDTKPKTFSELIRISGLSHGTD----VWLNNAQD----------LVRNNIASL 1203

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRA----MGKKIKEEMDK-QKERFISGASKNG 740
              VI  ++ +M     L  Y L      +       GK +KEE ++  +E+ +       
Sbjct: 1204 SEVICTRDDIM---LNLIHYGLPNKTAFKIMEDVRKGKGLKEEYEQIMREKKVPDWYIES 1260

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
              K               Y F K+HAAAY +++++ AW K +YP  F A   T+  D  +
Sbjct: 1261 CKKI-------------KYMFPKAHAAAYVMMAFRIAWFKVYYPEAFYATYFTVRADEFD 1307

Query: 801  -------------KIKKF--------------------CQDARQFNIQIMPPSV-NTPCV 826
                         KIK++                      +     I+ +P  +  +  V
Sbjct: 1308 ASMMCHGKEKVKNKIKEYELKGNNMTQKEKNTLTILEVANEMYARGIKFLPIDIYKSDAV 1367

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             FK+  + +   L A++G+G + A  I +A     F S++D   R    K+++ V+E L 
Sbjct: 1368 KFKIEKDGLRPPLNALQGLGVSAAHSIAQARNQGEFLSVDDLRIRA---KVSKTVIEILQ 1424

Query: 887  FAGALD 892
              G LD
Sbjct: 1425 QNGCLD 1430


>gi|330893149|gb|EGH25810.1| type II secretion system, protein F domain [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 179

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 60/85 (70%), Gaps = 1/85 (1%)

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
           +GYFL V D +++A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R 
Sbjct: 96  AGYFLTVHDIVEFARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERN 154

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKY 438
             PD D+DF  DRR+EVI+Y+  +Y
Sbjct: 155 EPPDIDVDFEHDRREEVIQYIFRRY 179


>gi|323489585|ref|ZP_08094812.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
 gi|323396716|gb|EGA89535.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
          Length = 1435

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 192/895 (21%), Positives = 335/895 (37%), Gaps = 185/895 (20%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             LL    EG + L +LVS  ++ +   +  RI  S LQ+   +GL++ +G   G +  A 
Sbjct: 613  TLLAQNDEGLKNLFKLVSASHI-NYFYRVPRIPRSLLQK-HRKGLLVGSGCDKGEVFEAV 670

Query: 160  FFNSSQVAEK--RLLTFKKLFGDRLYVNL-QRHRGYDRYRESQV----VQLAYTHELPLV 212
               S +  EK  +   + ++    +Y +L +R    D +    +    V+++   E+PLV
Sbjct: 671  MQKSMEEVEKTAQFYDYLEVHPKEVYSHLIEREMIRDEWNLEDIIRKLVKISRKLEIPLV 730

Query: 213  ATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL--PE 269
            AT N  +L E D     VL+     +  +++   P+V    + +  +EM+  F  L    
Sbjct: 731  ATGNVHYLDETDAIFRQVLIGSQGGANPLNRTKLPKV----HFRTTNEMLDAFDFLGSET 786

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            A E  V  + + S ++ V  PI       + +   +E         V  L   +AQ  I 
Sbjct: 787  AHELVVTNSLKISDMIDVVKPIKDELYTPKIEGADEE---------VRELSYNMAQ-QIY 836

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                 +    R++ EL  I    F+  +LI    ++ +  +   VG  RGS   S+ A  
Sbjct: 837  GSPLPEIVEARIEKELKSIIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSLVATL 895

Query: 390  LTITDIDPL----------------------RFSLL-------------------FERFL 408
              IT+++PL                       F L                    FE FL
Sbjct: 896  TEITEVNPLPPHYICRKCKKSEFFDDGSVGSGFDLKDKNCPDCDIPYQKEGQDIPFETFL 955

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
                  +PD D++F  + + +   Y +  +G + V +  T G++  K A           
Sbjct: 956  GFKGDKVPDIDLNFSGEYQSKAHNYTKELFGEDNVFRAGTIGTVAEKTA----------- 1004

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            Y  V                 +  A+D   R+  +    +DRL+   Q   G+ R    H
Sbjct: 1005 YGYV-----------------RGYAND---RDMTIRGAEIDRLV---QGCSGVKRSTGQH 1041

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLG 575
              GI++        VP Y D+    P+             T F+   I    L+K D LG
Sbjct: 1042 PGGIIV--------VPDYMDIYDFSPIQFPADAQDSEWKTTHFDFHSIHD-NLLKLDILG 1092

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
                T+++   D        +D   IP DD E   +     TLG+ + E  G +    G+
Sbjct: 1093 HDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFAGPETLGVTK-EQIGCKTGTLGI 1146

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQ 694
                   +  ++   +P     +V  +   +G +  +S    LI     +   VI  ++ 
Sbjct: 1147 PEFGTRFVRQMLEETKPNTFSELVQISGLSHGTDVWLSNAQELIQNGTCQLSDVIGCRDD 1206

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFE 751
            +M +  +  G        L  ++  KI E + K K     F     K G+      N + 
Sbjct: 1207 IM-VYLIYQG--------LESSLAFKIMESVRKGKGLTPEFEEAMKKEGVP-----NWYI 1252

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD--NVEKIKKFCQDA 809
               K   Y F K+HAAAY +++ + A+ K H+P+ + AA  T+  +  +V  + K  Q  
Sbjct: 1253 ESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHFPILYYAAYFTVRAEDFDVNAMSKGSQSI 1312

Query: 810  R------------------------QFNIQIMPPSVNTPCVD--------FKVGDNRIYY 837
            R                        +  ++++        VD        F +    +  
Sbjct: 1313 RSVIDEINSKGLEASTKEKNLLTVMELTLEMVERGYTFQKVDLYKSSADQFIIEGKSLIP 1372

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               AI G+GT  A+ I+ A     F S ED   R    ++++ ++E +   G L+
Sbjct: 1373 PFNAIPGLGTNAAKSIVAAREHGEFLSKEDLQQR---GRVSKTIIEYMDDHGCLE 1424


>gi|331087674|ref|ZP_08336601.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330410366|gb|EGG89799.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 1520

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 183/910 (20%), Positives = 339/910 (37%), Gaps = 193/910 (21%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I++L     G   L +L+S+ ++    ++  RI  S L E   EGL++ +   +G + +A
Sbjct: 675  IIILAKNDIGRYNLYQLISQSHMTYYARRP-RIPKSLLNE-HREGLLIGSACEAGELHQA 732

Query: 159  FFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRGYDRYRESQ-----VVQLAYTH 207
                 S     RL  F   +       ++  +  +R    +   + Q     +V+L    
Sbjct: 733  VHEKRSAQQIARLAEFYDYYEIQPVGNNQFMIESERIADVNSIEDLQNINREIVELGEKF 792

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
              P+VAT +  FL+ +D     ++MA          DR    P  +L+   EM+  FS L
Sbjct: 793  GKPVVATCDVHFLNPDDEVYRRIIMA---GKGFDDADR---QPPLFLRTTDEMLEEFSYL 846

Query: 268  PEA------LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
              A      ++N V+IA     +++  +P+ P     +C  + +  + ELR+     +  
Sbjct: 847  GAAKAREIVIDNPVKIAG----MIEKISPVNP----NKCPPVIENSDQELRD-----ICY 893

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
            R A     +    Q    RL+ ELN I    ++  ++I    +  +  +   VG  RGS 
Sbjct: 894  RKAHEMYGEDLPKQ-VSARLEKELNSIISNGYAVMYIIAQKLVWKSNADGYLVG-SRGSV 951

Query: 382  AGSVTAYALTITDIDPLR------------------------------------------ 399
              S  A    IT+++PL                                           
Sbjct: 952  GSSFVATMAGITEVNPLSPHYYCSKCHYSDFESDEVRSFAGGCGYDMPDKKCPVCGEQLV 1011

Query: 400  ---FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
               F + FE FL       PD D++F  D + +  +Y +  +G     +  T G+L  K 
Sbjct: 1012 KAGFDIPFETFLGFKGDKEPDIDLNFSGDYQAKAHKYTEVLFGEGHTFKAGTIGTLADKT 1071

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A   V R     + Q  R C+                              ++R   +++
Sbjct: 1072 AYGFV-RNYYEEHEQRKRKCE------------------------------IER---VTE 1097

Query: 517  KLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKF 571
               G+ R    H  GIV+      +++  P+     D+   +  T F+   I+   L+K 
Sbjct: 1098 GCTGIRRSTGQHPGGIVVLPHGHDINEFTPVQHPANDMECGITTTHFDYHSIDH-NLLKL 1156

Query: 572  DFLGLKTLTLLQKSLDFLAQRGVKVDLSL--------IPFDDHETYHLLTTKGTLGIFQL 623
            D LG    T+++   D++    ++ + +         IP DD +   L      LGI   
Sbjct: 1157 DILGHDDPTMIRTLEDYITSDAMENEYNADHPFIATEIPLDDKDVIELFHGTEVLGIKPE 1216

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG--------KEKIVSIH 675
            +  G +    G+     + +I +V   +P  + +++  +   +G        +E + S  
Sbjct: 1217 DIDGCKIGSLGIPEFGTDFVIQMVQDTKPQTLSDLIRISGLSHGTNVWLGNAQELVKSGK 1276

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
              I   +     ++IY    +    + S  + +  + +R+  GK +K E ++        
Sbjct: 1277 ATISTAICTRDDIMIY----LINKGVESALAFTIMESVRK--GKGLKPEWEE-------- 1322

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                 +      + +    K   Y F K+HAAAY +++Y+ A+ K +YP+ + AA   + 
Sbjct: 1323 ----AMKAQDVPDWYIWSCKKISYMFPKAHAAAYVMMAYRIAYCKINYPLAYYAAYFGIR 1378

Query: 796  MD---------------------------------NVEKIKKFCQDARQFNIQIMPPSV- 821
             D                                 +V K  K  Q+      + +P  + 
Sbjct: 1379 ADAFSYALMCQGKETLNYHIKQYKSKGDQLSKKEQDVLKDMKIVQEMYARGFEFVPIDIY 1438

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                  F++ D ++  SLA+I+G+G   A  + EA+ D  + SL+DF  R    K    +
Sbjct: 1439 RAKAKMFQIVDGKLMPSLASIEGMGDKAAEAVEEAAKDGAYLSLDDFRQRTKVSKTVIDL 1498

Query: 882  LESLVFAGAL 891
            +  L   G L
Sbjct: 1499 MAELGLFGDL 1508


>gi|303228949|ref|ZP_07315759.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            atypica ACS-134-V-Col7a]
 gi|302516363|gb|EFL58295.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            atypica ACS-134-V-Col7a]
          Length = 1241

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 201/1019 (19%), Positives = 373/1019 (36%), Gaps = 230/1019 (22%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            ++  S V L +H+  S  +  +S+ ++   +     PA+AITD   + +  E        
Sbjct: 312  DRPDSRVELHLHTKMSDKDALVSIKDLFKTVKKWGHPAVAITDHGVVQAFPEAQALGKEL 371

Query: 66   GIQPIIGCQL----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            G++ I G +     D D++  L +    +        I+LL     G + L +++S  +L
Sbjct: 372  GVKVIYGVEGYLVDDADLEKELSLDVVKRKDEAPRYHIILLAQNMVGLRNLYKMISISHL 431

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             +  K+  R+  S ++E   EG+++ +   +G + +A    +S+   + LLT    +   
Sbjct: 432  -EYYKRRPRLPRSIIEE-HREGILIGSACEAGELMQAIVKGASK---EELLTIASFYD-- 484

Query: 182  LYVNLQRH--------RGYDRYRES------QVVQLAYTHELPLVATNNSLFLSEEDYEA 227
             Y+ +Q H        +G     ++       V++L       + AT +  +L+ E+   
Sbjct: 485  -YLEIQPHTNNTFLIRKGIVPDEQALIDMNKTVIELGEALNKRVCATCDVHYLTPEEKIY 543

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
             ++++         ++      PD +L+   EM++ F  L E     V IA         
Sbjct: 544  REIMLTACGFPDADEQ------PDLHLRTTDEMLASFPYLSEEKAYEVVIANT------- 590

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI-AKGYHAQDY----RQRLD 342
                  R I    +DI+   +     K     E       + AK  +        ++RLD
Sbjct: 591  ------RAINDSIEDIKPVPDGTYSPKIEGADEAFTEMCYVNAKKIYGDPLPRVVQERLD 644

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---- 398
            +EL+ I    +   + I    ++ +  +   VG  RGS   S  A    IT+++PL    
Sbjct: 645  YELDCIISNGYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPHY 703

Query: 399  -----RFSLLFER--------------------------------FLNPDRMSMPDFDID 421
                 ++S  +E                                 FL  +   +PD D++
Sbjct: 704  ICPECKWSEFYENGEYAGGFDLPRRDCPNCGHPLQTNGHDIPFAIFLGFEGDKVPDIDLN 763

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  D + +  +Y +  +G + V +  T G++  K A   V +     Y++          
Sbjct: 764  FSGDYQAKAHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKK-----YAE---------- 808

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS- 540
                   L+ I   S F E             +++    +      H  GI++  R +  
Sbjct: 809  -------LRNIQARSGFLE------------HLAKGFTNVKNTTGQHPGGIMVCPRDMDV 849

Query: 541  -QLVPMYRDV---RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
                P+        S +  T F+   IE   + K D LG    T+++   D        +
Sbjct: 850  HHFTPIQHPANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIRMLEDLTG-----I 903

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII-ALVSLYRPGPI 655
            D   IPFDD  T  L ++   +G+   +  G + A   + P+C    +  ++   RP   
Sbjct: 904  DAKTIPFDDPRTLSLFSSTEGIGLTPEQLQGDQVASLAV-PECGTKFVRGMLEDSRPQTF 962

Query: 656  DNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
             ++V  +   +G    + +   LI     +    I  ++ VM               ++ 
Sbjct: 963  SDLVRISGFSHGTNVWLDNAQELIKNGTCKLNEAISTRDDVMNF-------------LIH 1009

Query: 715  RAMGKK----IKEEMDKQK---ERFISGASKNGISKTIAVN----IFELLAKFADYGFNK 763
            R M KK    + E + K K   +R   G +     K +  N     F    K   Y F +
Sbjct: 1010 RGMNKKNSFFVMENVRKGKGIEKRNKQGQATTEFEKEMRENNIPEWFIESCKKISYLFPR 1069

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            +HA AY +++++ AW K ++P+ F AA  ++              A+ F+++IM   +NT
Sbjct: 1070 AHAVAYVMMAFRIAWFKVYHPLAFYAAYFSIR-------------AKAFDLRIMTGDLNT 1116

Query: 824  PC---------------------------------------VD--------FKVGDNRIY 836
                                                     VD        F + D  + 
Sbjct: 1117 QLKEFNRIKALDRGASPKEKDLMSALEVSMEMYQRGYRFINVDIQHSGARRFSIKDGALL 1176

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                AI  +G T A  I+E    KPF SL+D   R    K++  ++E++     L C G
Sbjct: 1177 PPFLAIDSLGETVADAIVEERETKPFTSLKDLQRRC---KVSATIIETM---KELKCCG 1229


>gi|304437423|ref|ZP_07397382.1| DNA polymerase III PolC [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369679|gb|EFM23345.1| DNA polymerase III PolC [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 1254

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 218/1008 (21%), Positives = 369/1008 (36%), Gaps = 231/1008 (22%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  H+  S L+  +    +++  A    PA+AITD + +  A   +     A  +  I
Sbjct: 339  VELHAHTKMSALDAVVPPKVLVETAARWGWPAVAITD-HGVVQAFPEAMNTARALAKKGI 397

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS----RMYLLDQGKQ 127
              ++   M+  L         F     I+ L     G   L +LVS    R +   + + 
Sbjct: 398  DIKIIYGMEGYLVDGEDDARAF----HIIFLAKNKTGLYNLYKLVSLSHIRYFRGTKKRG 453

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL---------- 177
              R+  + L++   EG+I+ +   +G + R           + +  F             
Sbjct: 454  RPRVPRAVLEQY-REGIIVGSACEAGELIRGIVAGRPDAELEEMAKFYDFLEIQPIHNND 512

Query: 178  ---FGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
               F DR  +      R  +R    +V +LA     PL+AT +  FL+ ED   +  ++ 
Sbjct: 513  FLKFDDRFPMQTDEDLRDINR----KVDELARKLGKPLIATCDVHFLNPED-AVYRAMIQ 567

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPI 291
             A+      +D  R  P  YL+   EM++ F  L    A E  V   RR +   +   PI
Sbjct: 568  KANG----YRDAER-QPPLYLRTTEEMLAEFDYLGAERAYECVVTNPRRIAEETERFLPI 622

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGL--EVRLAQGAIAKGYHAQDYRQ----RLDFEL 345
                             +EL    V G   E++    A A+  + ++  +    RL+ EL
Sbjct: 623  ----------------PDELYAPMVPGADREIQEMSYARARKLYGENLPKIVSDRLELEL 666

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------- 398
              I R  F+  ++I    ++ +  +   VG  RGS   S  A  + +T+++PL       
Sbjct: 667  KPILRHGFAALYIIAQRLVKKSNDDGYLVG-SRGSVGSSFVATMIGVTEVNPLPPHYRCP 725

Query: 399  -----RF-----------------------------SLLFERFLNPDRMSMPDFDIDFCQ 424
                 RF                             ++ F  FL  D   +PD D++F  
Sbjct: 726  HCQYNRFIDDGSVGSGFDLPSEDCPVCGTPLIKDGHNIPFAVFLGFDGDKVPDIDLNFSG 785

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D +    +Y +  +G   V +  T   LQ K A    G A+     Q             
Sbjct: 786  DYQPVAHKYTEVLFGKMNVFRAGTIAGLQDKNAY---GYAMHYYEDQ------------- 829

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QL 542
                           EA+   P ++ ++   +   G+      HA GI++  R +     
Sbjct: 830  --------------GEAK-GRPYIEHMM---RGCMGVKATTGQHAGGIMVVPRDMDVHYF 871

Query: 543  VPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             P+ R   ++ SD   T F+   I +  L+K D LG    T++ K L+ L  R    D  
Sbjct: 872  TPIQRPANNMESDTLTTHFDYHSISER-LVKLDILGHDDPTVI-KMLEELTHR----DPE 925

Query: 600  LIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             IPFDD  T  + T+               GT GI +  +S  ++ ++   PDC  D++ 
Sbjct: 926  TIPFDDPATMSIFTSTDALGITPEDLGANMGTYGIPEFRTSFTQKMIDDSNPDCFADLVR 985

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
             +S +  G   N+ + N +            LI       +  I  ++ +M        Y
Sbjct: 986  -ISGFSHG--TNVWLGNAQD-----------LIKAGTSTLKDAISARDDIMN-------Y 1024

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD---YGFN 762
             +     +   +  K  E + K +     G + + + K  A  I E   +      Y F 
Sbjct: 1025 LMQNG--IEPLLSFKTMENVRKGR-----GIAPDVVEKLRAGGIPEWYIESCQKIKYLFP 1077

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTL---EMD-NV---------EKIKKFCQDA 809
            ++HA AY ++ Y+ A+ K HYP+ + AA  ++   E D N+           I     +A
Sbjct: 1078 RAHATAYVMMGYRIAFCKVHYPLAYYAAYFSIRAAEFDANIISKGKDAVRAAIDALLAEA 1137

Query: 810  RQFNIQIMPPSVNTPCV-------------------------DFKVGDNRIYYSLAAIKG 844
            R+   ++     +T  V                          F + +N +     AI G
Sbjct: 1138 REHRGKLDNKKQDTLIVLQLAWEMYLRGFSCEPVDLYASDAEKFILHENSLLPPFTAIPG 1197

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            VG   A+ I+EA  D  F S+ED  +R     +    +E L   G LD
Sbjct: 1198 VGQKAAQAIVEARRDGRFISVEDLATRA---HVPAPAIEVLRTHGCLD 1242


>gi|331085480|ref|ZP_08334565.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330407718|gb|EGG87216.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 1492

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 171/865 (19%), Positives = 326/865 (37%), Gaps = 192/865 (22%)

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRY 195
            EGLI+ +   +G + RA     S+    +++ +      + +  +   +  ++ R     
Sbjct: 696  EGLILGSACEAGELYRALLDGKSEETIAKIVDYYDYLEIQPIGNNAFMIASEKQRNIKSE 755

Query: 196  RE-----SQVVQLAYTHELPLVATNNSLFLSEEDYEAHD--VLMAVAHSTVVSQKDRPRV 248
             +      ++VQL    + P+VAT +  F+ + D E +   ++     S   SQ      
Sbjct: 756  EDLKNMNRRIVQLGEKFQKPVVATCDVHFM-DPDSEVYRRIIMTGKGFSDADSQ------ 808

Query: 249  TPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P  YL+   EM+  FS L   +A E  +    + +  ++  +P+ P     +C  + ++
Sbjct: 809  -PPLYLRTTEEMLEEFSYLGSKKAEEVVITNTNKIADSIERISPVRP----DKCPPVIED 863

Query: 307  EENELRN----KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             +  LRN    KA +     L +  +          +RL+ ELN I    F+  ++I   
Sbjct: 864  SDQTLRNICYDKAHSMYGEELPEIVV----------ERLERELNSIISNGFAVMYIIAQK 913

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------- 399
             +  + ++   VG  RGS   S  A    IT+++PL                        
Sbjct: 914  LVWKSNEDGYLVG-SRGSVGSSFVATMAGITEVNPLSPHYYCTNCHYSDFESEEVRAFAG 972

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                  F + FE FL       PD D++F  D +    +Y +  
Sbjct: 973  GCGWDMPDKVCPNCGQPLVKDGFDIPFETFLGFKGNKEPDIDLNFSGDYQSNAHKYTEVI 1032

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G  +  +  T G+L  K A   V    +  +    R C+                    
Sbjct: 1033 FGEGQTYRAGTIGTLAEKTAFGFVKNYYE-EHGSRKRKCE-------------------- 1071

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI---GDRPLSQLVPMYR---DVRS 551
                      ++R++E      G+ R    H  GI++   G+  ++   P+     D+ +
Sbjct: 1072 ----------IERIVE---GCTGIRRSTGQHPGGIIVLPHGEN-INSFTPVQHPANDMTT 1117

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYH 610
            D+  T F+   I+   L+K D LG    T+++   + + Q  G     + IP DD     
Sbjct: 1118 DIITTHFDYHSIDH-NLLKLDILGHDDPTMIKMLEELVEQLTGKPFKATEIPLDDPGVMQ 1176

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L    G+LGI   +  G      G+     + +I +V   +P  + +++  +   +G + 
Sbjct: 1177 LFADTGSLGIKPSDIGGCPVGCLGIPEFGTDFVIQMVVDTKPKTLSDLIRISGLSHGTDV 1236

Query: 671  IV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             + +   LI          I  ++ +M       + S  S +  + +R+  G K + E  
Sbjct: 1237 WLNNAQTLIQEGKATISTAICTRDDIMTYLINTGMESELSFTIMESVRKGKGLKTEWE-- 1294

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
                        + +      + +    K   Y F K+HAAAY +++Y+ A+ K +YP+ 
Sbjct: 1295 ------------DAMKAAGVPDWYIWSCKKIKYMFPKAHAAAYVMMAYRIAYCKVNYPLA 1342

Query: 787  FLAA---------SMTLEMDNVEKIKKFCQD--------------------------ARQ 811
            + AA         S  L     EK++ + +D                          AR 
Sbjct: 1343 YYAAYFSIRASAFSYELMCQGKEKLEFYLRDYKNRSDSLSKKDQDTLKDMRIVQEMYARG 1402

Query: 812  FNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
            +  + +P  +       F++ D ++   L++I+G+G   A  +  A+ D P+ S +DF  
Sbjct: 1403 Y--EFLPLDIYRAKATKFQIIDGKLMPPLSSIEGMGDKAAEAVEMAAEDGPYLSRDDFRQ 1460

Query: 871  RVDSKKLNRRVLESLVFAGALDCFG 895
            R    K+++ V++   F   L  FG
Sbjct: 1461 RT---KVSKTVID---FMADLGMFG 1479


>gi|325660790|ref|ZP_08149418.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325472864|gb|EGC76074.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 1492

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 173/865 (20%), Positives = 327/865 (37%), Gaps = 192/865 (22%)

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRL------LTFKKLFGDRLYVNLQRHRGYDRY 195
            EGLI+ +   +G + RA     S+    ++      L  + +  +   +  ++ R     
Sbjct: 696  EGLILGSACEAGELYRALLDGKSEETIAKIVDYYDYLEIQPIGNNAFMIASEKQRNIKSE 755

Query: 196  RE-----SQVVQLAYTHELPLVATNNSLFLSEEDYEAHD--VLMAVAHSTVVSQKDRPRV 248
             +      ++VQL    + P+VAT +  F+ + D E +   ++     S   SQ      
Sbjct: 756  EDLKNMNRRIVQLGEKFQKPVVATCDVHFM-DPDSEVYRRIIMTGKGFSDADSQ------ 808

Query: 249  TPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P  YL+   EM+  FS L   +A E  +    + +  ++  +P+ P     +C  + ++
Sbjct: 809  -PPLYLRTTEEMLEEFSYLGSKKAEEVVITNTNKIADSIERISPVRP----DKCPPVIED 863

Query: 307  EENELRN----KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             +  LRN    KA +     L +  +          +RL+ ELN I    F+  ++I   
Sbjct: 864  SDQTLRNICYDKAHSMYGEELPEIVV----------ERLERELNSIISNGFAVMYIIAQK 913

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------- 399
             +  + ++   VG  RGS   S  A    IT+++PL                        
Sbjct: 914  LVWKSNEDGYLVG-SRGSVGSSFVATMAGITEVNPLSPHYYCTNCHYSDFESEEVRAFAG 972

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                  F + FE FL       PD D++F  D +    +Y +  
Sbjct: 973  GCGWDMPDKVCPNCGQPLVKDGFDIPFETFLGFKGNKEPDIDLNFSGDYQSNAHKYTEVI 1032

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G  +  +  T G+L  K A   V    +  +    R C+                    
Sbjct: 1033 FGEGQTYRAGTIGTLAEKTAFGFVKNYYE-EHGSRKRKCE-------------------- 1071

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI---GDRPLSQLVPMYR---DVRS 551
                      ++R++E      G+ R    H  GI++   G+  ++   P+     D+ +
Sbjct: 1072 ----------IERIVE---GCTGIRRSTGQHPGGIIVLPHGEN-INSFTPVQHPANDMTT 1117

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYH 610
            D+  T F+   I+   L+K D LG    T+++   + + Q  G     + IP DD     
Sbjct: 1118 DIITTHFDYHSIDH-NLLKLDILGHDDPTMIKMLEELVEQLTGKPFKATEIPLDDPGVMQ 1176

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L    G+LGI   +  G      G+     + +I +V   +P  + +++  +   +G + 
Sbjct: 1177 LFADTGSLGIKPSDIGGCPVGCLGIPEFGTDFVIQMVVDTKPKTLSDLIRISGLSHGTDV 1236

Query: 671  IV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             + +   LI          I  ++ +M       + S  S +  + +R+  GK +K E +
Sbjct: 1237 WLNNAQTLIQEGKATISTAICTRDDIMTYLINTGMESELSFTIMESVRK--GKGLKPEWE 1294

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
                        + +      + +    K   Y F K+HAAAY +++Y+ A+ K +YP+ 
Sbjct: 1295 ------------DAMKAAGVPDWYIWSCKKIKYMFPKAHAAAYVMMAYRIAYCKVNYPLA 1342

Query: 787  FLAA---------SMTLEMDNVEKIKKFCQD--------------------------ARQ 811
            + AA         S  L     EK++ + +D                          AR 
Sbjct: 1343 YYAAYFSIRASAFSYELMCQGKEKLEFYLRDYKNRSDSLSKKDQDTLKDMRIVQEMYARG 1402

Query: 812  FNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
            +  + +P  +       F++ D ++   L++I+G+G   A  +  A+ D P+ S +DF  
Sbjct: 1403 Y--EFLPLDIYRAKATKFQIIDGKLMPPLSSIEGMGDKAAEAVEMAAEDGPYLSRDDFRQ 1460

Query: 871  RVDSKKLNRRVLESLVFAGALDCFG 895
            R    K+++ V++   F   L  FG
Sbjct: 1461 RT---KVSKTVID---FMADLGMFG 1479


>gi|257469515|ref|ZP_05633607.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185]
 gi|317063759|ref|ZP_07928244.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185]
 gi|313689435|gb|EFS26270.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185]
          Length = 1446

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 181/910 (19%), Positives = 345/910 (37%), Gaps = 194/910 (21%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS----- 152
            ++++LV   EG Q +  LVS  ++   G +  R+  S +++   EGLI+ +  SS     
Sbjct: 609  NVIVLVKNLEGLQNMYRLVSEAHVDYYGNKKPRVLKSHIEKY-REGLIIGSSLSSHFMND 667

Query: 153  GPIDRAFFFNSSQVAEKRL--LTFKKLFGDRLYVNLQRHRGYDRYRESQVVQ-------- 202
            G +   +     +  EK +    + +L     Y  L    G        +++        
Sbjct: 668  GELSNYYMRYDYEKIEKNIDFYDYIELLPRGAYSELYEDDGTGTISSFTMIEDMNKYFYN 727

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            LA      + A++N  +++E D +   +L+  + S  V + ++ +     Y +   E+++
Sbjct: 728  LAKERGKLVTASSNVHYINENDSKIRSILLYGSGS--VYRANQYKTDNKFYFRTTEELIN 785

Query: 263  IFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
             F+ L E  A E  V      + +++V  P+   F   + D+ +   +     KA     
Sbjct: 786  EFNYLGEETAKEIVVSGTNAIADMIEVIKPVPDGFYPPKIDNAENIVKEMTYEKAY---- 841

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
             R+    + +   A     RL+ EL  I    FS  +L     ++ +  N   VG  RGS
Sbjct: 842  -RIYGNPLPEIVKA-----RLERELGAIIGNGFSVLYLSAQKLVKKSLDNGYLVG-SRGS 894

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ AY + IT+++ L                                          
Sbjct: 895  VGSSLVAYMMDITEVNALYPHYICTNPECKNSEFIEREGVGIDLPEKICPKCGQPYKRDG 954

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            +S+ FE F+  +   +PD D++F  + + E+ RY +  +G E V +  T  +L  K A  
Sbjct: 955  YSIPFEVFMGFNGEKVPDIDLNFSGEYQSEIHRYCEQLFGKENVFKAGTISTLAEKNAEG 1014

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V +  +    + +R                                    ++ +++K E
Sbjct: 1015 YVRKYFEEHEMKGNRA----------------------------------EIIRLAKKCE 1040

Query: 520  GLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            G  +    H  G+V+   D  + +  P+ +   D ++D   T F+   +++  L+K D L
Sbjct: 1041 GAKKTTGQHPGGMVVVPRDHSIYEFCPVQKPANDEKNDSITTHFDYHVMDEQ-LVKLDIL 1099

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            G    T ++     + Q    VD+  IP  D ET  + +    LGI              
Sbjct: 1100 GHDDPTTIK-----MLQEYTGVDIYTIPIADPETLKIFSGTEALGI-------------- 1140

Query: 635  MQPDCIEDIIALVSLYRPG-PIDNIVVYNNRKNGKEKIVSIHPL---IDPMLKETQGVII 690
              PD I  ++    +   G P    ++ +       ++V I  L    D  L   Q  I 
Sbjct: 1141 -TPDDINSVVGTFGVPEFGTPFVRQMLIDTMPKTFAELVRISGLSHGTDVWLNNAQEFIR 1199

Query: 691  YQE----QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK--------ERFISGASK 738
             ++    QV+ +   +  Y + +   L +    KI E + K K        E+F +   +
Sbjct: 1200 QKKATLSQVITVRDDIMNYLIDQG--LEKGTAFKIMEFVRKGKPSKDPEGWEKFSNEMKE 1257

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            + +++    +      +   Y F K HA AY +++ + A+ K HYP+ F AA ++ + ++
Sbjct: 1258 HDVAEWYIES-----CRRIKYMFPKGHAVAYVMMAMRIAYFKVHYPLAFYAAYLSRKAED 1312

Query: 799  VE-----------------------KIKK-----FCQ-----DARQFNIQIMPPSVNTPC 825
             +                        +KK      C+      AR +  + +P  V T  
Sbjct: 1313 FDYEIMSDPKTAKEHLAVLSKEPKLDVKKKAEMAICEIIVEMYARGY--EFLPIDVYTSA 1370

Query: 826  -VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
               F + D +I   L A+ G+G     ++++      F S ED   R    K+++ ++E 
Sbjct: 1371 GFRFTIEDGKIRIPLIALNGLGGAVIENLIKERDISKFLSYEDLKRRT---KISQTIIEK 1427

Query: 885  LVFAGALDCF 894
            L    A+D  
Sbjct: 1428 LKSINAVDSL 1437


>gi|163785584|ref|ZP_02180146.1| DNA polymerase III alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879148|gb|EDP73090.1| DNA polymerase III alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 243

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 75/236 (31%), Positives = 120/236 (50%), Gaps = 18/236 (7%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S  F HL +HS YSLL+GA+ +  +  K       A+A+TD  N+F A+EF Q+    G+
Sbjct: 2   SKDFTHLHLHSHYSLLDGAIKIPELAKKAKEYGYKAVALTDHGNIFGAIEFYQEMKKVGV 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS----IVLLVSTAEGYQRLIELVSRMYLLD 123
           +PIIG +       N +   +G+     +      ++L      G++ L++L S  Y  +
Sbjct: 62  KPIIGMEAYF---TNNRFEKKGEGSDSILADKNYHLILHAKDKTGFKNLMKLSSLAY-TE 117

Query: 124 QGKQSVRICLSW-LQEIGTEGLIMLTGGSSGPIDRAFF---FNSSQVAEKRLLTFKKLFG 179
                 RI   W L E   EGLI  T    G I        F+ +    KRL   K +FG
Sbjct: 118 GFYYKPRI--DWELLEKYHEGLICQTACLKGFIPHLLSKGKFDEAYEYGKRL---KDIFG 172

Query: 180 DRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
           + LY  +Q +   ++   ++ +++LA   ++ +VATN+S +L+EED EAHDV+ A+
Sbjct: 173 EDLYFEIQINGLEEQEIANKGILELAEKLDVKVVATNDSHYLNEEDAEAHDVIKAL 228


>gi|153814386|ref|ZP_01967054.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756]
 gi|145848782|gb|EDK25700.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756]
          Length = 1459

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 183/910 (20%), Positives = 339/910 (37%), Gaps = 193/910 (21%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I++L     G   L +L+S+ ++    ++  RI  S L E   EGL++ +   +G + +A
Sbjct: 614  IIILAKNDIGRYNLYQLISQSHMTYYARRP-RIPKSLLNE-HREGLLIGSACEAGELYQA 671

Query: 159  FFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRGYDRYRESQ-----VVQLAYTH 207
                 S     RL  F   +       ++  +  +R    +   + Q     +V+L    
Sbjct: 672  VHEKRSAQQIARLAEFYDYYEIQPVGNNQFMIESERIADVNSIEDLQNINREIVELGEKF 731

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
              P+VAT +  FL+ +D     ++MA          DR    P  +L+   EM+  FS L
Sbjct: 732  GKPVVATCDVHFLNPDDEVYRRIIMA---GKGFDDADR---QPPLFLRTTDEMLEEFSYL 785

Query: 268  PEA------LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
              A      ++N V+IA     +++  +P+ P     +C  + +  + ELR+     +  
Sbjct: 786  GAAKAREIVIDNPVKIAG----MIEKISPVNP----NKCPPVIENSDQELRD-----ICY 832

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
            R A     +    Q    RL+ ELN I    ++  ++I    +  +  +   VG  RGS 
Sbjct: 833  RKAHEMYGEDLPKQ-VSARLEKELNSIISNGYAVMYIIAQKLVWKSNADGYLVG-SRGSV 890

Query: 382  AGSVTAYALTITDIDPLR------------------------------------------ 399
              S  A    IT+++PL                                           
Sbjct: 891  GSSFVATMAGITEVNPLSPHYYCSKCHYSDFESDEVRSFAGGCGYDMPDKKCPVCGEQLV 950

Query: 400  ---FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
               F + FE FL       PD D++F  D + +  +Y +  +G     +  T G+L  K 
Sbjct: 951  KAGFDIPFETFLGFKGDKEPDIDLNFSGDYQAKAHKYTEVLFGEGHTFKAGTIGTLADKT 1010

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A   V R     + Q  R C+                              ++R   +++
Sbjct: 1011 AYGFV-RNYYEEHEQRKRKCE------------------------------IER---VTE 1036

Query: 517  KLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKF 571
               G+ R    H  GIV+      +++  P+     D+   +  T F+   I+   L+K 
Sbjct: 1037 GCTGIRRSTGQHPGGIVVLPHGHDINEFTPVQHPANDMECGITTTHFDYHSIDH-NLLKL 1095

Query: 572  DFLGLKTLTLLQKSLDFLAQRGVKVDLSL--------IPFDDHETYHLLTTKGTLGIFQL 623
            D LG    T+++   D++    ++ + +         IP DD +   L      LGI   
Sbjct: 1096 DILGHDDPTMIRTLEDYITSDAMENEYNADHPFIATEIPLDDKDVIELFHGTEVLGIKPE 1155

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG--------KEKIVSIH 675
            +  G +    G+     + +I +V   +P  + +++  +   +G        +E + S  
Sbjct: 1156 DIDGCKIGSLGIPEFGTDFVIQMVQDTKPQTLSDLIRISGLSHGTNVWLGNAQELVKSGK 1215

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
              I   +     ++IY    +    + S  + +  + +R+  GK +K E ++        
Sbjct: 1216 ATISTAICTRDDIMIY----LINKGVESALAFTIMESVRK--GKGLKPEWEE-------- 1261

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                 +      + +    K   Y F K+HAAAY +++Y+ A+ K +YP+ + AA   + 
Sbjct: 1262 ----AMKAQDVPDWYIWSCKKISYMFPKAHAAAYVMMAYRIAYCKINYPLAYYAAYFGIR 1317

Query: 796  MD---------------------------------NVEKIKKFCQDARQFNIQIMPPSV- 821
             D                                 +V K  K  Q+      + +P  + 
Sbjct: 1318 ADAFSYALMCQGKETLNYHIKQYKSKGDQLSKKEQDVLKDMKIVQEMYARGFEFVPIDIY 1377

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                  F++ D ++  SLA+I+G+G   A  + EA+ D  + SL+DF  R    K    +
Sbjct: 1378 RAKAKMFQIVDGKLMPSLASIEGMGDKAAEAVEEAAKDGAYLSLDDFRQRTKVSKTVIDL 1437

Query: 882  LESLVFAGAL 891
            +  L   G L
Sbjct: 1438 MAELGLFGDL 1447


>gi|239502679|ref|ZP_04661989.1| putative DNA polymerase III alpha chain [Acinetobacter baumannii
           AB900]
          Length = 421

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 73/118 (61%), Gaps = 2/118 (1%)

Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
           +G+ +++A  I+E     A+Y FNKSH+  Y++IS   A+++ HYP E+ AAS+++ +D 
Sbjct: 11  DGLEESVAERIWEQTEANANYQFNKSHSVEYSIISMWCAYIRVHYPAEYFAASLSV-VDT 69

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIME 855
            +K+    +DAR+  I+I+PP +N     +K+  N  I     A+KG+  T A+ I++
Sbjct: 70  EDKLTGLVKDARECGIEILPPDINYSADRYKIKSNTEILAPFNAVKGISETIAKAIVK 127


>gi|291459111|ref|ZP_06598501.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
            str. F0262]
 gi|291418365|gb|EFE92084.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
            str. F0262]
          Length = 1517

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 183/842 (21%), Positives = 309/842 (36%), Gaps = 192/842 (22%)

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV----NLQRHRGYDRYR- 196
            EGLI+ +  ++G + +A    +    E++LL+    + D L +    N     G DRY  
Sbjct: 725  EGLILGSACAAGELFQAILRGAE---EEQLLSIASFY-DYLEIQPLGNNAFMLGSDRYSA 780

Query: 197  ESQVVQLAYTHEL---------PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +S+   +AY  ++         P+ AT +  ++  ED     ++MA        + D   
Sbjct: 781  KSREDLIAYNRKILSLGEQLGKPVCATCDCHYIEPEDDIYRRIIMA-GRGFEEEESD--- 836

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                 Y +N  EM+S FS L         ++N   IA  C FI     P+ P     +C 
Sbjct: 837  --ASLYFRNTEEMLSEFSYLEPNKAKEVVIDNPKRIADMCEFI----EPVRP----DKCP 886

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR---QRLDFELNVIARMKFSGYFL 358
             +  + + ELR         R+      K Y     R   +RL+ EL  I    +S  ++
Sbjct: 887  PVIPDSDAELR---------RICSETAHKMYGPSLPRIVEERLETELRSIISNGYSVLYI 937

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL-------------------- 398
            I    +  + ++   VG  RGS   S  A    IT+++PL                    
Sbjct: 938  IAQRLVDKSNEDGYLVG-SRGSVGSSFAATMAHITEVNPLPPHYVCPDCYWSDFDSPEVK 996

Query: 399  -------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
                                      F + FE FL  +    PD D++F  + + +   Y
Sbjct: 997  AFSGMAGCDMPKKKCPHCGAELNRWGFDIPFETFLGFNGDKEPDIDLNFSGEYQAKAHAY 1056

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
                +G     +  T G+L  K A   V +     Y +   L K                
Sbjct: 1057 TGEIFGEGHTFKAGTIGTLADKTAYGMVKK-----YYEERNLIK---------------- 1095

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---D 548
                    R A+  ++R++   Q   G+ R    H  GIV+      ++   P+     D
Sbjct: 1096 --------RGAE--IERMV---QGCVGVRRTTGQHPGGIVVLPHGEEINTFTPVQHPAND 1142

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
            + S +  T F+   I+   L+K D LG    T+++K  D      VK     IP D  E 
Sbjct: 1143 LGSPIITTHFDYHKIDH-NLLKLDILGHDDPTMIRKLQDLTGIDPVKD----IPLDSPEV 1197

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L  +   LGI   +  G+R    G+        + +V   +P    +++  +   +G 
Sbjct: 1198 MSLFRSTEALGIRPEDIQGVRLGCLGIPEFGTSFAMQMVEDTKPRYFSDLIRISGLSHGT 1257

Query: 669  EKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEE 724
            +  ++    LI   +   Q  I  ++ +M       +  G S S  +  R+   K +KEE
Sbjct: 1258 DVYLNNAQDLILEGVTTLQDAICCRDDIMVYLMHRGMDPGESFSIMEATRKH--KPLKEE 1315

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
                   + S   K G+ +      +    K   Y F K+HAAAY +++++ A+ K  YP
Sbjct: 1316 -------WCSDMLKRGVPQW-----YIDACKKIKYMFPKAHAAAYVMMAWRVAYCKVFYP 1363

Query: 785  VEFLAASMTLEMDNVEKIK--------------------------------KFCQDARQF 812
             E+ AA  ++  D  +  K                                K C++    
Sbjct: 1364 REYYAAYYSIRADGFDYDKMCFGLDKLRYYIKLYQEIERPTATESVCLRDMKICEEMYAR 1423

Query: 813  NIQIMPPSV-NTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
             I+  P  +      DF++ GD +I  S   + G+G   A  I E +    F S +DF +
Sbjct: 1424 GIEFAPIDIYRARAKDFQITGDGKIMPSFNCMAGLGEAVALGIEEGARKGAFLSKDDFLN 1483

Query: 871  RV 872
            R 
Sbjct: 1484 RT 1485


>gi|295696154|ref|YP_003589392.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
 gi|295411756|gb|ADG06248.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
          Length = 1428

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 184/906 (20%), Positives = 335/906 (36%), Gaps = 211/906 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +LV    G + L  LVS  +     +Q       WL     EGL+M TG   G + +A 
Sbjct: 608  TILVKNPTGLKNLYRLVSLAHTRYLHRQPRIPRTEWLNY--REGLMMGTGCLRGELFQAL 665

Query: 160  FFNSSQ------------VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
                S             V  + L  ++ L  +    +L+    Y R    ++++LA   
Sbjct: 666  LRGRSDEELLDIIQRYDFVEIQPLDQYRPLLRNEEIRDLEAVAEYHR----RILELADRA 721

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
              P+VAT +  +L  ED    D+L A ++  V    D P     ++ +   EM++ F  L
Sbjct: 722  GRPVVATGDVHYLDPEDRIYRDILQAGSNMEV----DDPDA--GYHFRTTEEMLAAFGHL 775

Query: 268  -PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
             P A+E  VE A R +  ++V  PI                 +EL    + G E ++   
Sbjct: 776  GPRAVEVVVENANRIAEEIEVVKPI----------------PDELYTPVIDGAEEQIRSL 819

Query: 327  AIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
            A  K          +  + RL+ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 820  AYEKARRLYGDPLPELVKARLEKELNSIINHGYAVIYLIAHKLVTQSLKDGYLVG-SRGS 878

Query: 381  GAGSVTAYALTITDIDPLRFSLL------------------------------------- 403
               S+ A    IT+++PL    L                                     
Sbjct: 879  VGSSLVATMTDITEVNPLPPHYLCPACHYSEFVTAGSVGSGFDLPDRECPRCGEKLGKDG 938

Query: 404  ----FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
                FE F+      +PD D++F  + +    +Y ++ +G + V +  T  ++  K A  
Sbjct: 939  HDIPFETFMGFKGDKVPDIDLNFSGEYQSRAHKYTEHLFGSDHVFRAGTISTVAEKTA-- 996

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                     Y  V +  +                     R  +L +  + RL+   Q   
Sbjct: 997  ---------YGYVRKFAEE--------------------RGLQLRNAELTRLV---QGCT 1024

Query: 520  GLYRHASTHAAGIVI--GDRPLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H  G+++   ++ +    P+     D  +    T F+   I    L+K D L
Sbjct: 1025 GIKRTTGQHPGGLMVVPSNKEIFDFCPIQFPADDKTAGTRTTHFDYHSIHD-NLLKLDLL 1083

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGI 620
            G    T+++   D        V    IP DD +T  +               +T GT GI
Sbjct: 1084 GHDDPTVIRMLQDLTG-----VAPKEIPVDDPDTMSIFSGTEVLGVTPEQIRSTVGTYGI 1138

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +RQ LE  +P    +++ +  L          V+ N  N ++ I S    +  
Sbjct: 1139 PEFGTKFVRQMLEDTKPKTFAELVRISGLSH-----GTDVWLN--NAQDLIRSGTARLSE 1191

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     +++Y   + +  + +  + + E+  +R+  G   ++E   +         ++G
Sbjct: 1192 VISTRDDIMVY--LIQKGMEPVQAFRIMES--VRKGKGLTPEDEATMK---------EHG 1238

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN-- 798
            +      + +    K   Y F K+HA AY +++ + A+ K H P+ F A   T+  D+  
Sbjct: 1239 VP-----DWYIASCKKIKYMFPKAHATAYVLMAVRIAYFKVHNPLAFYATYFTVRADDFD 1293

Query: 799  -----------VEKIKKFCQDARQFN------IQIMPPSVNTPCVDFKVGDNRIYYS--- 838
                       + +I+       Q        + ++  ++      F+ G   +Y S   
Sbjct: 1294 LQLVLQGPDVVLRRIEAVEAKGSQATAKEKSLLTVLEVALEMMQRGFRFGPLDLYRSDAT 1353

Query: 839  -------------LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                          +A+ G+G + AR++  A  +  F S++D   R    +L+R V+E L
Sbjct: 1354 RFVPDGEGTLIPPFSAVAGIGESAARNVAAAREEGEFLSVQDLQERA---RLSRPVVELL 1410

Query: 886  VFAGAL 891
               G L
Sbjct: 1411 EQMGCL 1416


>gi|328957406|ref|YP_004374792.1| DNA polymerase III PolC [Carnobacterium sp. 17-4]
 gi|328673730|gb|AEB29776.1| DNA polymerase III PolC [Carnobacterium sp. 17-4]
          Length = 1446

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 194/925 (20%), Positives = 339/925 (36%), Gaps = 246/925 (26%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI---- 155
             ++ ++  G + L +LVS   +++   ++ R+  S L ++  EGLI+ T  S G +    
Sbjct: 620  TIMATSQAGLKNLFKLVSSS-MVNYFFRTARLPRSELNKL-REGLIIGTACSQGEVFEAM 677

Query: 156  ---------DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYT 206
                     ++A F++  +V  K +  +  L    L  N        R     +V++   
Sbjct: 678  MQKGYDEAKNKAKFYDYIEVMPKEV--YAPLIEQELVTNESDLEEIIR----NLVKIGKE 731

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
              +P+VAT N  +L+ ED     +L+ +   +  +++ + P V    + +  +EM+  FS
Sbjct: 732  LNIPVVATGNVHYLNPEDSIYRKILINSQGGANPLNRAELPEV----HFRTTTEMLETFS 787

Query: 266  DLPE------ALENTVEIARRCS-FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
             L +       +ENT +IA      I  V   +    IE   D+I++   +E        
Sbjct: 788  FLGKETAQQIVVENTNKIADMVEDGITPVKTDLYTPKIEGSEDEIRQLSYDEAH------ 841

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
               RL    +      +   +R++ ELN I    FS  +LI    +  +  +   VG  R
Sbjct: 842  ---RLYGNPL-----PEIIEKRIEKELNSIIGNGFSVIYLISQKLVHKSMSDGYLVG-SR 892

Query: 379  GSGAGSVTAYALTITDIDPL---------RFS---------------------------- 401
            GS   S  A    IT+++P+         +FS                            
Sbjct: 893  GSVGSSFVATMTGITEVNPMPPHYTCPNCQFSEFFTDGSVGSGYDLPDKNCPKCEARLHK 952

Query: 402  ----LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
                + FE FL      +PD D++F  D + +   Y +  +G E V +  T G++  + A
Sbjct: 953  DGHDIPFETFLGFYGDKVPDIDLNFSGDYQAKAHNYTKELFGEEYVFRAGTIGTVADRTA 1012

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
               V       Y + + L                           L    +DRL + S  
Sbjct: 1013 FGYVKG-----YERDNNLT--------------------------LRAAEIDRLAKGST- 1040

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIE 564
              G+ R    H  GI++        +P Y DV    P+             T F+   I 
Sbjct: 1041 --GVKRTTGQHPGGIIV--------IPDYMDVYDFTPIQFPADAQDSEWKTTHFDFHSIH 1090

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL------------ 612
               ++K D LG    T+++   D        VD   IP DD E   +             
Sbjct: 1091 D-NVLKLDILGHDDPTVIRMLQDLSG-----VDPKTIPTDDPEVMKIFGGTEVLGVTPEQ 1144

Query: 613  --TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP-----GPIDNIVVYNNRK 665
              +  GTLGI +  +  +R  LE   P    +++ +  L        G  + ++  NN  
Sbjct: 1145 IQSKTGTLGIPEFGTRFVRGMLEETMPTTFAELLQISGLSHGTDVWLGNAEELIRMNNI- 1203

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG--KKIKE 723
                      PL + ++     +++Y    +    L  G +    + +R+  G     ++
Sbjct: 1204 ----------PLSE-VIGCRDDIMVY----LIHNGLEDGIAFKIMESVRKGKGIPDDWQK 1248

Query: 724  EMDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             M  QK  E +I    K                    Y F K+HAAAY +++ + A+ K 
Sbjct: 1249 AMRDQKIPEWYIESCLK------------------IKYMFPKAHAAAYVLMALRVAYYKV 1290

Query: 782  HYPVEFLAASMTLEMD---------------------------------NVEKIKKFCQD 808
            H+P+ + AA  ++  D                                 N   + + C +
Sbjct: 1291 HFPILYYAAYFSVRADDFDLVAMAKGKESLKLKMKEITDKGLDASTKEKNTLTVLELCNE 1350

Query: 809  --ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
               R FN +++    + P  +F +  N +     A+  +G   A+ I EA  DKPF S E
Sbjct: 1351 MVERGFNFKMVDLEKSDPT-NFVIEGNSLIAPFRAVPSLGANVAKQIKEARNDKPFLSKE 1409

Query: 867  DFCSRVDSKKLNRRVLESLVFAGAL 891
            D   R    K+++ V+E L   G L
Sbjct: 1410 DLAKR---GKVSKTVIEYLNENGVL 1431


>gi|308068695|ref|YP_003870300.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681]
 gi|305857974|gb|ADM69762.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681]
          Length = 1438

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 199/917 (21%), Positives = 334/917 (36%), Gaps = 241/917 (26%)

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G + L +LVS M   +  K+   I  S L E+  +GL++++G   G    A    S + A
Sbjct: 621  GKKNLYKLVS-MSHTEYFKRVPCIPKSKLSEM-RDGLLIISGCEKGEFFEAVLNKSEEEA 678

Query: 168  EK-----RLLTFKKLFGDRLYVNLQRHRGYDRYRES--QVVQLAYTHELPLVATNNSLFL 220
            E+      +L  + L      V  Q   G D  + +  +V ++    + P++AT N  +L
Sbjct: 679  EEIAQFYDVLEIQPLTMYMHLVEKQLVSGPDALKTAIRKVCEIGRRLDKPVIATGNVHYL 738

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENT 274
               D    D+ +   H        +    PD +L+   EM++ F  L E       ++NT
Sbjct: 739  ETRDKLYRDITI---HGITGFSPLKDIRKPDAHLRTTDEMLAEFEFLGEEKAYEVVVKNT 795

Query: 275  VEIARRCS----FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
             E+A R      F  ++  P+L        D   +E  N     A +     L +  +A 
Sbjct: 796  SELADRFEELELFPDKLFTPLL--------DGADEEIRNTCYETAKSIYGEELPEVVVA- 846

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                     RL+ EL  I +  FS  +LI    ++ + K+   VG  RGS   SV A  L
Sbjct: 847  ---------RLEKELEPIIKYGFSANYLISERLVKKSNKDGYLVG-SRGSVGSSVVATFL 896

Query: 391  TITDIDPL-----------RFS--------------------------------LLFERF 407
             I++++PL           R S                                + FE F
Sbjct: 897  GISEVNPLPAHYICGNPDCRHSEWILDGSVPSGFDLPDKNCPNCGGKLKGEGQDIPFETF 956

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            L      +PD D++F  + +     Y +  +G + V +  T G++  K A          
Sbjct: 957  LGFKGDKVPDIDLNFSGEYQPVAHNYTKVLFGEKSVFRAGTIGTVAEKTAF-----GFAK 1011

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
             Y +                     A   ++R A L     +RL   +    G+ R    
Sbjct: 1012 KYEE---------------------AHHKKWRGAEL-----NRL---ASGCTGVKRSTGQ 1042

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFL 574
            H  GIV+        VP Y +V    PV             T F+    + A L+K D L
Sbjct: 1043 HPGGIVV--------VPDYIEVEDITPVQYPADDTSSEWKTTHFDYHAFD-ANLLKLDIL 1093

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGI 620
            G    T+++   D        VD + IP +D +   +               T   T G+
Sbjct: 1094 GHDDPTMMRMLQDLTG-----VDPTTIPMNDPKVMSMFNSTEALGVTPQQIRTPVATYGV 1148

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI-- 678
             ++ +  +RQ L   QP    D++ +  L        + + N ++  K    +I  +I  
Sbjct: 1149 PEMGTKFVRQMLVESQPSSFADLLQISGLSHG---TGVWLGNAQELIKNNTCNIKTVIGC 1205

Query: 679  --DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK--EEMDKQK--ERF 732
              D ML      +IY+      A + +G +    + +R+  G   +  EEM K K  + +
Sbjct: 1206 RDDIML-----FLIYK------AGMDAGLAFKITESVRKGKGLSAEWIEEMKKCKVPQWY 1254

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I    K                    Y F K+HAAAY + + +TA+ K ++P+E+ A   
Sbjct: 1255 IDSCLK------------------IQYMFPKAHAAAYVISAVRTAYFKLYHPIEYYATYF 1296

Query: 793  TLEMDNVEKIKKFCQ----------DARQFNIQIMPPS---------------------- 820
            ++   + + I+  CQ          +  Q   Q  P                        
Sbjct: 1297 SVRAADFD-IELCCQGYDAIARKIVEIEQLGFQAPPKEKGMLPILEMALEMTARGFSFKS 1355

Query: 821  ---VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
                 +    FKV  + +     A++G+G   AR+I  +     F S+EDF  +    K 
Sbjct: 1356 IDLYRSEATRFKVDGDSLIPPFGALQGIGDNAARNIAASREQGEFLSVEDFQQK---SKA 1412

Query: 878  NRRVLESLVFAGALDCF 894
            ++ ++E L   G   CF
Sbjct: 1413 SKTIVEMLSQMG---CF 1426


>gi|331269632|ref|YP_004396124.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925]
 gi|329126182|gb|AEB76127.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum BKT015925]
          Length = 1443

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 191/910 (20%), Positives = 336/910 (36%), Gaps = 216/910 (23%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +++L     G + L +L+S   L D   +  R+  S +++   EGLI+ +   +G + +A
Sbjct: 621  LIILAKNQVGLKNLYKLISYSNL-DYFFRKPRMPKSLIEQY-KEGLIIGSACEAGEVYKA 678

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVN--LQRHRGYDRYRES------QVVQLAYTHELP 210
                 SQ   K+++ F      +  +N      +G  +  E       ++  L   + LP
Sbjct: 679  VLEGKSQEELKQMIKFYNYLEIQPIMNNEFMLKKGIVKSEEQLKEVNRKIYNLGKENGLP 738

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
            +VAT +  FL  +D +  ++LM          +D+P +    YLK  +EM+  F  L + 
Sbjct: 739  VVATGDVHFLDPKDAKFREILM--KGQGFSDAEDQPPL----YLKTTNEMLKEFQYLGDD 792

Query: 270  -----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
                  + N  +IA     +  +     P  IE   +DI+    N    KA +     + 
Sbjct: 793  ACKEVVIYNPQKIAEEVEVVKPIPDETFPPKIEGAEEDIR----NMTLEKAYS-----IY 843

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
               + K  H      RL+ ELN I    ++  +LI    +  + K+   VG  RGS   S
Sbjct: 844  GNPLPKVVH-----DRLEKELNSIINNGYAVLYLIAHKLVAKSLKDGYLVG-SRGSVGSS 897

Query: 385  VTAYALTITDIDPL-----------------------------------------RFSLL 403
            + A    IT+++ L                                            + 
Sbjct: 898  LVATMSDITEVNGLPPHYVCPNCKNSEFFTDGSVSSGADLPPKKCPNCGDEYNRNGHDIP 957

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  +    PD D++F  D + ++ RY +  +G     +  T G++  K A   V +
Sbjct: 958  FETFLGFNGDKEPDIDLNFSGDNQGDIHRYTEVLFGKGHTFKAGTIGTIADKTAYGFVKK 1017

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             L                D  + +  QA                V+RL   +Q   G+ R
Sbjct: 1018 YL----------------DEKNLIVSQA---------------EVERL---TQGCTGVKR 1043

Query: 524  HASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
             +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D LG   
Sbjct: 1044 TSGQHPGGIMVVPSDNEIYNFCPIQHPADDSNSDIITTHFDYHSIS-GRLLKLDILGHDD 1102

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE-------------- 624
             T+L+     + +    +D   IP  D +   L T+   LGI + E              
Sbjct: 1103 PTVLR-----MLKDTTGLDPITIPIGDEKVLSLFTSPEALGITEEELECPVGCYGIPEFG 1157

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +  +RQ L   QP    D++ +  L       ++ + N +   KE   ++          
Sbjct: 1158 TKFVRQMLVDTQPKTFSDLVRISGLSHG---TDVWLNNAQYFIKEGYTTL---------- 1204

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM--GKKIKEEMD------KQKERFISGA 736
             +  I  ++ +M +  L  G    EA  +   +  GK + EE +      K  + +I   
Sbjct: 1205 -KDCIATRDDIM-VYLLHKGLPPKEAFTIMEKVRKGKGLTEEHEALMREHKVPDWYIESC 1262

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL-- 794
             K                    Y F K HA AY +++ + A+ K +YP  + A   T+  
Sbjct: 1263 KK------------------IKYMFPKGHAVAYVMMAVRIAYYKVYYPQAYYATYFTVRG 1304

Query: 795  ------------------EMDNVEKIK--------------KFCQDARQFNIQIMPPSV- 821
                              +MD +  +               +   +  + NI+ +   V 
Sbjct: 1305 IDDFDADLIVKGEDVVKRKMDEINALGNNVTQKDKGLLTNLELAFEMYKRNIKFLKVDVY 1364

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
             +    F + ++ I   ++++ GVGT  A+ I EA  +  F S ED   R    K+++ V
Sbjct: 1365 KSHPTKFLIENDDIRPPISSLAGVGTNAAKSIAEAREEGEFISKEDLRKR---SKVSKTV 1421

Query: 882  LESLVFAGAL 891
            +E+L   G L
Sbjct: 1422 VEALSEHGCL 1431


>gi|255975216|ref|ZP_05425802.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|255968088|gb|EET98710.1| DNA polymerase III [Enterococcus faecalis T2]
          Length = 1439

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 179/912 (19%), Positives = 335/912 (36%), Gaps = 215/912 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 608  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 665

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 666  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 725

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 726  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDI 781

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 782  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 838

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 839  ---------------VEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSV 882

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 883  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 942

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 943  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 999

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1000 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1028

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1029 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1079

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        +D   IP DD E   +               +
Sbjct: 1080 ILKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMRIFEGPDVLGVDAEQIYS 1134

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1135 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1187

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1188 GEANLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNKIPDEL---RDTYL 1240

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1241 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1295

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1296 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1355

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1356 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1412

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1413 TLIEYMNENGVL 1424


>gi|225572667|ref|ZP_03781422.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM
            10507]
 gi|225039967|gb|EEG50213.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM
            10507]
          Length = 1464

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 160/779 (20%), Positives = 291/779 (37%), Gaps = 153/779 (19%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
             PT  +I+L  S A G   L +LVS  +L    ++  R+  S  ++   EGLI+ +   +
Sbjct: 627  LPTYHAIILASSEA-GRINLYKLVSLSHLKYYNRRP-RVPKSVFEQ-HREGLIIGSACEA 683

Query: 153  GPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYV----NLQRHRGYD-RYRESQVV 201
            G + +A   ++S     RL+ F      + L  ++  +    N + H   D +    ++V
Sbjct: 684  GELYQALLRDASPQEIARLVNFYDYLEIQPLGNNKFMIADEKNDKVHSMEDLKEMNRKIV 743

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +L    + P+VAT +  F+  +D     ++M+          D+  +    YL+   EM+
Sbjct: 744  KLGEQFQKPVVATCDVHFMDPKDEVYRRIIMS--GKGFGDADDQAPL----YLRTTEEML 797

Query: 262  SIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELR 312
              FS L         + NT++IA  C  +  +H    P  IE   ++  DI   + +E+ 
Sbjct: 798  EEFSYLGSEKAEEVVITNTLKIADMCDKVSPIHPDKCPPVIENSDQDLRDICYNKAHEIY 857

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             + +  +                   +RL  EL  I    ++  ++I    +  +  +  
Sbjct: 858  GEPLPPI-----------------VEERLKKELTSIISNGYAVMYIIAQKLVWKSNDDGY 900

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPL---------------------------------- 398
             VG  RGS   S+ A    IT+++PL                                  
Sbjct: 901  LVG-SRGSVGSSLAATMSGITEVNPLPPHYVCPKCKYSDFDSEDVKKFVGKVGCDMPDKV 959

Query: 399  -----------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                        F + FE FL       PD D++F  + +    RY +  +G     +  
Sbjct: 960  CPKCGTKLNKNGFDIPFETFLGFKGDKEPDIDLNFSGEYQAVAHRYTEVIFGEGHTFKAG 1019

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G+L  K A   V    +  + Q  R C+                              
Sbjct: 1020 TIGTLAEKTAFGYVKNYFE-EHGQPKRYCE------------------------------ 1048

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKW 562
            ++RL+   +   G+ R    H  GI++      + +  P+     DV SD+  T F+   
Sbjct: 1049 INRLV---KGCTGIRRTTGQHPGGIIVLPHGEEIEKFTPVQHPANDVNSDIITTHFDYHS 1105

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            I+   L+K D LG    T+++   D         D   +P D+ E   L  +   LGI  
Sbjct: 1106 ID-GNLLKLDILGHDDPTMIRMLEDLTG-----TDAKEVPLDNPEVMSLFASTKALGIEP 1159

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPM 681
             +  G      G+     + +I ++   +P    ++V  +   +G    + +   LI   
Sbjct: 1160 KDIGGCPLGCLGIPEFGTDFVIGMLQDTKPTCFSDLVRISGLSHGTNVWLGNAQELIRQG 1219

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM--GKKIKEEMDKQKERFISGASKN 739
                   I  ++ +M    +  G   S+A  +  ++  GK +K E ++            
Sbjct: 1220 KATISTAICTRDDIMGYL-INQGVESSQAFTIMESVRKGKGLKPEWEET----------- 1267

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             +      + +    K   Y F K+HAAAY +++Y+ AW K  YP+ + AA  ++   N
Sbjct: 1268 -MKANHVPDWYIWSCKQISYMFPKAHAAAYVMMAYRIAWYKIFYPLAYYAAFFSIRATN 1325


>gi|317500099|ref|ZP_07958334.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898584|gb|EFV20620.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 1520

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 183/910 (20%), Positives = 339/910 (37%), Gaps = 193/910 (21%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I++L     G   L +L+S+ ++    ++  RI  S L E   EGL++ +   +G + +A
Sbjct: 675  IIILAKNDIGRYNLYQLISQSHMTYYARRP-RIPKSLLNE-HREGLLIGSACEAGELYQA 732

Query: 159  FFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRGYDRYRESQ-----VVQLAYTH 207
                 S     RL  F   +       ++  +  +R    +   + Q     +V+L    
Sbjct: 733  VHEKRSAQQIARLAEFYDYYEIQPVGNNQFMIESERIADVNSIEDLQNINREIVELGEKF 792

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
              P+VAT +  FL+ +D     ++MA          DR    P  +L+   EM+  FS L
Sbjct: 793  GKPVVATCDVHFLNPDDEVYRRIIMA---GKGFDDADR---QPPLFLRTTDEMLEEFSYL 846

Query: 268  PEA------LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
              A      ++N V+IA     +++  +P+ P     +C  + +  + ELR+     +  
Sbjct: 847  GAAKAREIVIDNPVKIAG----MIEKISPVNP----NKCPPVIENSDQELRD-----ICY 893

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
            R A     +    Q    RL+ ELN I    ++  ++I    +  +  +   VG  RGS 
Sbjct: 894  RKAHEMYGEDLPKQ-VSARLEKELNSIISNGYAVMYIIAQKLVWKSNADGYLVG-SRGSV 951

Query: 382  AGSVTAYALTITDIDPLR------------------------------------------ 399
              S  A    IT+++PL                                           
Sbjct: 952  GSSFVATMAGITEVNPLSPHYYCSKCHYSDFESDEVRSFAGGCGYDMPDKKCPVCGEQLV 1011

Query: 400  ---FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
               F + FE FL       PD D++F  D + +  +Y +  +G     +  T G+L  K 
Sbjct: 1012 KAGFDIPFETFLGFKGDKEPDIDLNFSGDYQAKAHKYTEVLFGEGHTFKAGTIGTLADKT 1071

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A   V R     + Q  R C+                              ++R   +++
Sbjct: 1072 AYGFV-RNYYEEHEQRKRKCE------------------------------IER---VTE 1097

Query: 517  KLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKF 571
               G+ R    H  GIV+      +++  P+     D+   +  T F+   I+   L+K 
Sbjct: 1098 GCTGIRRSTGQHPGGIVVLPHGHDINEFTPVQHPANDMECGITTTHFDYHSIDH-NLLKL 1156

Query: 572  DFLGLKTLTLLQKSLDFLAQRGVKVDLSL--------IPFDDHETYHLLTTKGTLGIFQL 623
            D LG    T+++   D++    ++ + +         IP DD +   L      LGI   
Sbjct: 1157 DILGHDDPTMIRTLEDYITSDAMENEYNADHPFIATEIPLDDKDVIELFHGTEVLGIKPE 1216

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG--------KEKIVSIH 675
            +  G +    G+     + +I +V   +P  + +++  +   +G        +E + S  
Sbjct: 1217 DIDGCKIGSLGIPEFGTDFVIQMVQDTKPQTLSDLIRISGLSHGTNVWLGNAQELVKSGK 1276

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
              I   +     ++IY    +    + S  + +  + +R+  GK +K E ++        
Sbjct: 1277 ATISTAICTRDDIMIY----LINKGVESALAFTIMESVRK--GKGLKPEWEE-------- 1322

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                 +      + +    K   Y F K+HAAAY +++Y+ A+ K +YP+ + AA   + 
Sbjct: 1323 ----AMKAQDVPDWYIWSCKKISYMFPKAHAAAYVMMAYRIAYCKINYPLAYYAAYFGIR 1378

Query: 796  MD---------------------------------NVEKIKKFCQDARQFNIQIMPPSV- 821
             D                                 +V K  K  Q+      + +P  + 
Sbjct: 1379 ADAFSYALMCQGKETLNYHIKQYKSKGDQLSKKEQDVLKDMKIVQEMYARGFEFVPIDIY 1438

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                  F++ D ++  SLA+I+G+G   A  + EA+ D  + SL+DF  R    K    +
Sbjct: 1439 RAKAKMFQIVDGKLMPSLASIEGMGDKAAEAVEEAAKDGAYLSLDDFRQRTKVSKTVIDL 1498

Query: 882  LESLVFAGAL 891
            +  L   G L
Sbjct: 1499 MAELGLFGDL 1508


>gi|307285835|ref|ZP_07565969.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
 gi|306502596|gb|EFM71863.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
          Length = 1451

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 179/912 (19%), Positives = 335/912 (36%), Gaps = 215/912 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 620  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 677

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 678  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 737

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 738  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDI 793

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 794  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 850

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 851  ---------------VEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSV 894

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 895  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 954

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 955  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 1011

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1012 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1040

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1041 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1091

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        +D   IP DD E   +               +
Sbjct: 1092 ILKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMRIFEGPDVLGVDAEQIYS 1146

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1147 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1199

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1200 GEANLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNKIPDEL---RDTYL 1252

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1253 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1307

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1308 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1367

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1368 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1424

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1425 TLIEYMNENGVL 1436


>gi|303231452|ref|ZP_07318183.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            atypica ACS-049-V-Sch6]
 gi|302513889|gb|EFL55900.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            atypica ACS-049-V-Sch6]
          Length = 1241

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 200/1019 (19%), Positives = 373/1019 (36%), Gaps = 230/1019 (22%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            ++  S V L +H+  S  +  +S+ ++   +     PA+AITD   + +  E        
Sbjct: 312  DRPDSRVELHLHTKMSDKDALVSIKDLFKTVKKWGHPAVAITDHGVVQAFPEAQALGKEL 371

Query: 66   GIQPIIGCQL----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            G++ I G +     D D++  L +    +        I+LL     G + L +++S  +L
Sbjct: 372  GVKVIYGVEGYLVDDADLEKELSLDVVKRKDEAPRYHIILLAQNMVGLRNLYKMISISHL 431

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             +  K+  R+  S ++E   EG+++ +   +G + +A    +S+   + LLT    +   
Sbjct: 432  -EYYKRRPRLPRSIIEE-HREGILIGSACEAGELMQAIVKGASK---EELLTIASFYD-- 484

Query: 182  LYVNLQRH--------RGYDRYRES------QVVQLAYTHELPLVATNNSLFLSEEDYEA 227
             Y+ +Q H        +G     ++       V++L       + AT +  +L+ E+   
Sbjct: 485  -YLEIQPHTNNTFLIRKGIVPDEQALIDMNKTVIELGEALNKRVCATCDVHYLTPEEKIY 543

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
             ++++         ++      PD +L+   EM++ F  L E     V +A         
Sbjct: 544  REIMLTACGFPDADEQ------PDLHLRTTDEMLASFPYLSEEKAYEVVVANT------- 590

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI-AKGYHAQDY----RQRLD 342
                  R I    +DI+   +     K     E       + AK  +        ++RLD
Sbjct: 591  ------RAINDSIEDIKPVPDGTYSPKIEGADEAFTEMCYVNAKKIYGDPLPRVVQERLD 644

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---- 398
            +EL+ I    +   + I    ++ +  +   VG  RGS   S  A    IT+++PL    
Sbjct: 645  YELDCIISNGYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPHY 703

Query: 399  -----RFSLLFER--------------------------------FLNPDRMSMPDFDID 421
                 ++S  +E                                 FL  +   +PD D++
Sbjct: 704  ICPECKWSEFYENGEYAGGFDLPRRDCPNCGHPLQTNGHDIPFAIFLGFEGDKVPDIDLN 763

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  D + +  +Y +  +G + V +  T G++  K A   V +     Y++          
Sbjct: 764  FSGDYQAKAHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKK-----YAE---------- 808

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS- 540
                   L+ I   S F E             +++    +      H  GI++  R +  
Sbjct: 809  -------LRNIQARSGFLE------------HLAKGFTNVKNTTGQHPGGIMVCPRDMDV 849

Query: 541  -QLVPMYRDV---RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
                P+        S +  T F+   IE   + K D LG    T+++   D        +
Sbjct: 850  HHFTPIQHPANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIRMLEDLTG-----I 903

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII-ALVSLYRPGPI 655
            D   IPFDD  T  L ++   +G+   +  G + A   + P+C    +  ++   RP   
Sbjct: 904  DAKTIPFDDPRTLSLFSSTEGIGLTPEQLQGDQVASLAV-PECGTKFVRGMLEDSRPQTF 962

Query: 656  DNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
             ++V  +   +G    + +   LI     +    I  ++ VM               ++ 
Sbjct: 963  SDLVRISGFSHGTNVWLDNAQELIKNGTCKLNEAISTRDDVMNF-------------LIH 1009

Query: 715  RAMGKK----IKEEMDKQK---ERFISGASKNGISKTIAVN----IFELLAKFADYGFNK 763
            R M KK    + E + K K   +R   G +     K +  N     F    K   Y F +
Sbjct: 1010 RGMNKKNSFFVMENVRKGKGIEKRNKQGQATTEFEKEMRENNIPEWFIESCKKISYLFPR 1069

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            +HA AY +++++ AW K ++P+ F AA  ++              A+ F+++IM   +NT
Sbjct: 1070 AHAVAYVMMAFRIAWFKVYHPLAFYAAYFSIR-------------AKAFDLRIMTGDLNT 1116

Query: 824  PC---------------------------------------VD--------FKVGDNRIY 836
                                                     VD        F + D  + 
Sbjct: 1117 QLKEFNRIKALDRGASPKEKDLMSALEVSMEMYQRGYRFINVDIQHSGARRFSIKDGALL 1176

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                AI  +G T A  I+E    KPF SL+D   R    K++  ++E++     L C G
Sbjct: 1177 PPFLAIDSLGETVADAIVEEREAKPFTSLKDLQRRC---KVSATIIETM---KELKCCG 1229


>gi|116491013|ref|YP_810557.1| DNA polymerase III, alpha subunit ( type) [Oenococcus oeni PSU-1]
 gi|116091738|gb|ABJ56892.1| DNA polymerase III, alpha subunit (gram-positive type) [Oenococcus
            oeni PSU-1]
          Length = 1437

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 171/810 (21%), Positives = 288/810 (35%), Gaps = 197/810 (24%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            Q V+LA   ELPLV T +  +L+E+D     +L+    +   +  +      D  +K   
Sbjct: 711  QYVKLADILELPLVVTGDVHYLTEKDRIYRTILLNSKIARSAAAGETRYTLADLSMKKTQ 770

Query: 259  EMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             ++  F+ L   +A E  VE + +               I +  DD+Q  ++  L    +
Sbjct: 771  HLLDEFAFLGKEKAYEIVVENSHK---------------INQMIDDVQPLKKG-LSTPKI 814

Query: 317  AGLEVRLAQGAIAK-----GYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
             G E  L + A A+     G    D  Q RLD ELN I    ++  ++I    +  + K+
Sbjct: 815  EGSEDILRKKAYARAKEMYGNPLPDLIQKRLDRELNAIIGNGYAVIYVISQRLVDKSNKD 874

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPL------------RF------------------ 400
               VG  RGS   S+ A  + IT+++PL             F                  
Sbjct: 875  GYIVG-SRGSVGSSLVATMMGITEVNPLPPHYRSVNGNYTEFVEDANVSSGFDLPEKRNP 933

Query: 401  -----------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                       ++ FE FL      +PD D++F  D +     Y +  +G   V +  T 
Sbjct: 934  VDGTILIGDGQNIPFETFLGFKGDKVPDIDLNFSGDYQPIAHNYTKVMFGENNVFRAGTI 993

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++  K A           Y  V    +               A+D  +R+A       D
Sbjct: 994  GTVAEKTA-----------YGMVKNYEE---------------ANDVHYRKAE-----ED 1022

Query: 510  RLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIE 564
            RL   S  + G+ R    HA GI+I   D  +    P+     D +S+   T  +   I 
Sbjct: 1023 RL---SNGITGVKRTTGQHAGGIIIIPSDHDVYDFTPIQFPADDTKSNWKTTHLDYHSIH 1079

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT---------- 614
               ++K D LG    TLL+   D        +D   +P +D     L T+          
Sbjct: 1080 D-NVLKMDILGHDDPTLLRALQDMSG-----IDPKTVPVNDPGVLSLFTSTKALHVTEDE 1133

Query: 615  ----KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
                 GTLGI +  ++ +R  LE  +P    +++ +  L     + N       KNG+  
Sbjct: 1134 IMSNTGTLGIPEFGTNFVRGMLEQTKPHNFGELLQISGLSHGTNVWNGNADELIKNGQAN 1193

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL---SGYSLSEADVLRRAMGKKIKEEMDK 727
            I ++    D ++ +     +      QI + +    G S    ++L+            K
Sbjct: 1194 IGTVIGTRDKIMTDLMSFGLESSDAFQIMEKVRKGKGISPEHMEILK---------AHPK 1244

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
                +I    K                    Y F ++HAAAY + + + A+ K ++P  +
Sbjct: 1245 VPNWYIDSMLK------------------IQYMFPRAHAAAYVMSALRIAFFKVYFPAIY 1286

Query: 788  LAASMTL-----------------------------------EMDNVEKIKKFCQDARQF 812
             AA  ++                                   E      I +   +A Q 
Sbjct: 1287 YAAFFSVRAKDKTIDAVGITQGKTKVQALVRSYRSRYNDLNKEESKTLAIYEIANEAWQR 1346

Query: 813  NIQI-MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
             I+  M     +   D+K+  N+I     A++G+G   A+ I+ A A+  F S ED   R
Sbjct: 1347 GIEFKMVDLYKSEAFDWKIDGNQIILPFVALQGLGDNVAKAIVAARAEHEFISKEDLAKR 1406

Query: 872  VDSKKL------NRRVLESLVFAGALDCFG 895
                K          +L+ +  A  +D F 
Sbjct: 1407 GSVNKTLIDFMDQNHMLDGMTDANQMDLFA 1436


>gi|118586857|ref|ZP_01544291.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163]
 gi|290890494|ref|ZP_06553569.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429]
 gi|118432689|gb|EAV39421.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163]
 gi|290479890|gb|EFD88539.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429]
          Length = 1437

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 171/810 (21%), Positives = 288/810 (35%), Gaps = 197/810 (24%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            Q V+LA   ELPLV T +  +L+E+D     +L+    +   +  +      D  +K   
Sbjct: 711  QYVKLADILELPLVVTGDVHYLTEKDRIYRTILLNSKIARSAAAGETRYTLADLSMKKTQ 770

Query: 259  EMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             ++  F+ L   +A E  VE + +               I +  DD+Q  ++  L    +
Sbjct: 771  HLLDEFAFLGKEKAYEIVVENSHK---------------INQMIDDVQPLKKG-LSTPKI 814

Query: 317  AGLEVRLAQGAIAK-----GYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
             G E  L + A A+     G    D  Q RLD ELN I    ++  ++I    +  + K+
Sbjct: 815  EGSEDILRKKAYARAKEMYGNPLPDLIQKRLDRELNAIIGNGYAVIYVISQRLVDKSNKD 874

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPL------------RF------------------ 400
               VG  RGS   S+ A  + IT+++PL             F                  
Sbjct: 875  GYIVG-SRGSVGSSLVATMMGITEVNPLPPHYRSVNGNYTEFVEDANVSSGFDLPEKRNP 933

Query: 401  -----------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                       ++ FE FL      +PD D++F  D +     Y +  +G   V +  T 
Sbjct: 934  VDGTILIGDGQNIPFETFLGFKGDKVPDIDLNFSGDYQPIAHNYTKVMFGENNVFRAGTI 993

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++  K A           Y  V    +               A+D  +R+A       D
Sbjct: 994  GTVAEKTA-----------YGMVKNYEE---------------ANDVHYRKAE-----ED 1022

Query: 510  RLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIE 564
            RL   S  + G+ R    HA GI+I   D  +    P+     D +S+   T  +   I 
Sbjct: 1023 RL---SNGITGVKRTTGQHAGGIIIIPSDHDVYDFTPIQFPADDTKSNWKTTHLDYHSIH 1079

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT---------- 614
               ++K D LG    TLL+   D        +D   +P +D     L T+          
Sbjct: 1080 D-NVLKMDILGHDDPTLLRALQDMSG-----IDPKTVPVNDPGVLSLFTSTKALHVTEDE 1133

Query: 615  ----KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
                 GTLGI +  ++ +R  LE  +P    +++ +  L     + N       KNG+  
Sbjct: 1134 IMSNTGTLGIPEFGTNFVRGMLEQTKPHNFGELLQISGLSHGTNVWNGNADELIKNGQAN 1193

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL---SGYSLSEADVLRRAMGKKIKEEMDK 727
            I ++    D ++ +     +      QI + +    G S    ++L+            K
Sbjct: 1194 IGTVIGTRDKIMTDLMSFGLESSDAFQIMEKVRKGKGISPEHMEILK---------AHPK 1244

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
                +I    K                    Y F ++HAAAY + + + A+ K ++P  +
Sbjct: 1245 VPNWYIDSMLK------------------IQYMFPRAHAAAYVMSALRIAFFKVYFPAIY 1286

Query: 788  LAASMTL-----------------------------------EMDNVEKIKKFCQDARQF 812
             AA  ++                                   E      I +   +A Q 
Sbjct: 1287 YAAFFSVRAKDKTIDAVGITQGKTKVQALVKSYRSRYNDLNKEESKTLAIYEIANEAWQR 1346

Query: 813  NIQI-MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
             I+  M     +   D+K+  N+I     A++G+G   A+ I+ A A+  F S ED   R
Sbjct: 1347 GIEFKMVDLYKSEAFDWKIDGNQIILPFVALQGLGDNVAKAIVAARAEHEFISKEDLAKR 1406

Query: 872  VDSKKL------NRRVLESLVFAGALDCFG 895
                K          +L+ +  A  +D F 
Sbjct: 1407 GSVNKTLIDFMDQNHMLDGMTDANQMDLFA 1436


>gi|21314372|gb|AAM46912.1|AF508325_1 DNA polymerase III C [Enterococcus faecalis]
          Length = 1439

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 179/912 (19%), Positives = 335/912 (36%), Gaps = 215/912 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 608  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 665

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 666  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 725

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 726  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDV 781

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 782  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 838

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  FLI    +  + ++   VG  RGS 
Sbjct: 839  ---------------VEKRLEKELNSINGNGFSVIFLISQKLVHKSNEDGYLVG-SRGSV 882

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 883  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 942

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 943  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 999

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1000 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1028

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1029 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1079

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        ++   IP DD E   +               +
Sbjct: 1080 ILKLDILGHDDPTVIRMLQDLSG-----IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYS 1134

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1135 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1187

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1188 GEANLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNKIPDEL---RDTYL 1240

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1241 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1295

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1296 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1355

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1356 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1412

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1413 TLIEYMNENGVL 1424


>gi|312898623|ref|ZP_07758013.1| DNA polymerase III, alpha subunit [Megasphaera micronuciformis F0359]
 gi|310620542|gb|EFQ04112.1| DNA polymerase III, alpha subunit [Megasphaera micronuciformis F0359]
          Length = 1202

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 205/1012 (20%), Positives = 362/1012 (35%), Gaps = 245/1012 (24%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H++ S ++  +++ +++  +     PAIA+TD   + S       A A G++ I 
Sbjct: 290  VELHLHTTMSDMDALITVKDLIKTVKKWNHPAIAVTDHGVVQSFPMLQSVAKANGVKVIY 349

Query: 72   GCQ---LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            G +    D ++  +                I++L     G + L +LVS  +L    +  
Sbjct: 350  GMEGYLFDEEIDKSYH--------------IIILAKNQVGIRNLYKLVSISHLKYIYRGR 395

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL--TFKKL--FGDRLYV 184
             RI    L E   EGLI+ +   +G + R+       + +KRL     KK+  + D L +
Sbjct: 396  PRIPRKILNEY-REGLILGSACEAGELVRS-------MVQKRLPYDELKKIAEYYDYLEI 447

Query: 185  NLQRHRGY----------DRYRESQVVQLAYTHELP--LVATNNSLFLSEEDYEAHDVLM 232
                + G+          +  R+     L    EL    VAT ++ F+++ED    ++LM
Sbjct: 448  QPISNNGFLVREGFVDDEEGLRDINRTILKIGDELGKMTVATCDAHFMNKEDKIYREILM 507

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
                 T    +D  +  PD YL+   EM+  F+ L       V I               
Sbjct: 508  -----TGKGFRD-AQFQPDLYLRTTDEMLEEFAYLGTDRAEEVVITN------------- 548

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD------YRQRLDFELN 346
            P  +    +++    +  L    + G    L +  + K +            +RLD E  
Sbjct: 549  PNKVNDWVEEVTPVPKENLYFPRIEGSSEALKEMCLRKAHKIYGTPLPTVVEERLDEEFT 608

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL-------- 398
             I    F   + I    ++ +  +   VG  RGS   S  A    IT+++PL        
Sbjct: 609  SIFGNGFGVLYYIAHKLVKHSNDDGYLVG-SRGSVGSSFVATMSDITEVNPLPPHYVCPS 667

Query: 399  ---------------------------------RFSLLFERFLNPDRMSMPDFDIDFCQD 425
                                               ++ F  FL  +   +PD D++F  +
Sbjct: 668  CCHSEFFTDGSVAGGFDLPDKNCPECGTPMKKDGHNIPFAIFLGFEGDKVPDIDLNFSGE 727

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
               +  +Y +  +G + V +  T G++Q K A           Y  V             
Sbjct: 728  YHPKAHKYTEELFGKDNVFRAGTIGAVQDKTA-----------YGYV------------- 763

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLV 543
                       ++ EAR    +   +  +     G+      H  G+++  R +      
Sbjct: 764  ----------KKWAEARGITANDAYINSLVNGCTGIKNTTGQHPGGVMVIPRDIDVHHFT 813

Query: 544  PM-YRDVRSDLPV--TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+ Y   + D  +  T F+   IE   L+K D LG    T+++   D     GVK   + 
Sbjct: 814  PVQYPANKKDCGIITTHFDYHSIE-GRLVKLDILGHDDPTVIRMLEDM---TGVKA--TT 867

Query: 601  IPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            IPFDD +T  L ++               G+LGI +  +S +R+ L    P     ++ +
Sbjct: 868  IPFDDQKTMSLFSSTEALGLTPEELGSPVGSLGIPEFGTSFVRKMLVDTMPKTFSGLVRI 927

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY--------QEQVMQI 698
                         V+ N  N +E I S    ++  +     ++ Y        +     +
Sbjct: 928  SGFSH-----GTDVWLN--NAQELITSGKVQLNEAVSTRDDIMNYLINHGIKPKTSFKVM 980

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKE---EMDKQK--ERFISGASKNGISKTIAVNIFELL 753
              +  G  + + D   +A GKK  +   E+ K    E FI    K G             
Sbjct: 981  ENVRKGKGIDKPD---KATGKKTTDYEGELRKGHIPEWFIQSCLKIG------------- 1024

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM----------------- 796
                 Y F ++HA AY +++++ AW K +YP+ + AA  T+                   
Sbjct: 1025 -----YLFPRAHAVAYVMMAFRIAWYKINYPLAYYAAYFTIRAKAFSIPMMIHGLDTARQ 1079

Query: 797  ---------DNVEKIKKFCQDARQF-------NIQIMPPSVN-TPCVDFKVGDNRIYYSL 839
                     D   KI+K      +         I  M   +N +    F + D +I    
Sbjct: 1080 AMKMITAKGDGASKIEKDLYSTLELVVEMNLRGISFMNIDINKSEATKFTIHDGKILLPF 1139

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             A+ G+G   A  I+E    + + S ED   R    K+ + +++SL   G L
Sbjct: 1140 TALDGLGKNVAEQIVEGRKSQAYTSKEDLKYR---GKVGQTLIDSLAEMGCL 1188


>gi|319649525|ref|ZP_08003681.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
 gi|317398687|gb|EFV79369.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
          Length = 1441

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 202/948 (21%), Positives = 345/948 (36%), Gaps = 233/948 (24%)

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +      DN+   N  +   P      LL  T EG + + +LVS  +L +   +  RI
Sbjct: 593  GIEYHDQFNDNMGQGNAYQRARPA--HCTLLAQTEEGLKNIFKLVSISHL-EYFYRVPRI 649

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLFGDRLYV 184
              S LQ+    G+++ +G   G +       S    E     +       K ++   L +
Sbjct: 650  PRSVLQK-HRAGILVGSGCDKGEVFEGMMQKSPDEVEDTAQFYDYLEVHPKAVYAHLLEL 708

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             L R           +V+L    +LP+VAT N  +L+  D     +L  V      +  +
Sbjct: 709  ELVRDEKALEEIIGNIVKLGEKLDLPVVATGNVHYLNPNDKIYRKIL--VNSQGGANPLN 766

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R ++ PD + +  +EM+  FS L   +A E  VE   R + +++   PI           
Sbjct: 767  RHQL-PDVHFRTTNEMLDAFSFLGKDKAKEIVVENTNRIADMIEEIKPI----------- 814

Query: 303  IQKEEENELRNKAVAGL--EVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGY 356
                 +++L    + G   E+R     +A+  +     +    RL+ EL  I    F+  
Sbjct: 815  -----KDDLYTPKIEGADEEMRSMSYGMARKIYGDPLPEIVEARLEKELKSIIGHGFAVI 869

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------------ 398
            +LI    ++ +  +   VG  RGS   S  A    IT+++PL                  
Sbjct: 870  YLISHKLVKRSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPECKTSEFFNDG 928

Query: 399  -----------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                      + FE FL      +PD D++F  + +     Y +
Sbjct: 929  SVGSGFDLPDKDCPNCGAKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTK 988

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G E V +  T G++  K A   V       Y Q + L                    
Sbjct: 989  VLFGEEYVYRAGTIGTVADKTAYGYV-----KAYQQDNNL-------------------- 1023

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV------ 549
                  ++    +DRL   +    G+ R    H  GI++        VP Y D+      
Sbjct: 1024 ------QIRGAEIDRL---ASGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFSPI 1066

Query: 550  -------RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                    S+   T F+   I    L+K D LG    T+++   D        +D   IP
Sbjct: 1067 QFPADDRTSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIP 1120

Query: 603  FDDHETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             DD E                 ++   GTLGI +  +  +RQ LE  +P    +++ +  
Sbjct: 1121 TDDPEVMKIFSGPESLGVTEEQIMCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISG 1180

Query: 649  LYRPGPI----DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            L     +       +++NN  N  E I       D M+      +IYQ        L   
Sbjct: 1181 LSHGTDVWLGNAQELIHNNICNLSEVIGCRD---DIMV-----YLIYQ-------GLEPA 1225

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            ++    + +R+  GK + +EM+ +         KN + +    +      K   Y F K+
Sbjct: 1226 FAFKIMESVRK--GKGLSDEMEAE-------MRKNEVPEWYIDS-----CKKIKYMFPKA 1271

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN----------------VEKIKKFCQD 808
            HAAAY +++ + A+ K H+P+ + AA  T+  ++                +E+I     D
Sbjct: 1272 HAAAYVLMAVRIAYFKVHHPLLYYAAYFTVRAEDFDVDAMVKGSQAIRSRIEEINAKGLD 1331

Query: 809  A-------------------RQFNIQ---IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            A                   R FN Q   +   S N    +F +  N +     +I G+G
Sbjct: 1332 ASTKEKNLLTVMELALEMNERGFNFQKVDLYRSSAN----EFIIDGNSLIPPFNSIPGLG 1387

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            T  A +I++A  +  F S ED   R    K+++ ++E L   G L+  
Sbjct: 1388 TNAAFNIVKAREEGEFLSKEDLQQR---GKVSKTIIEYLDNHGCLESL 1432


>gi|311030091|ref|ZP_07708181.1| DNA polymerase III PolC [Bacillus sp. m3-13]
          Length = 1437

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 166/804 (20%), Positives = 295/804 (36%), Gaps = 206/804 (25%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
            + +V+L    E P+VAT N  +L E D    ++L  V   +  +  +R ++ PD + K  
Sbjct: 718  TNIVKLGEKLEKPVVATGNVHYLKETDKIHREIL--VRSQSGANPLNRHQL-PDVHFKTT 774

Query: 258  SEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
             EM++ FS L E  A E  V   ++ + +++   PI                +++L    
Sbjct: 775  DEMLAAFSFLGEEKAKEIVVTNTQKVAGMIEEIKPI----------------KDDLYTPK 818

Query: 316  VAGL--EVRLAQGAIAKGYHAQDY----RQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            + G   E+R    + A+  +  D      +R++ EL  I    F+  +LI    ++ +  
Sbjct: 819  IEGADEEIREMSYSRARSIYGDDLPEIVEKRIEKELKSIIGHGFAVIYLISQKLVKKSLD 878

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPL------------------------------- 398
            +   VG  RGS   S  A    IT+++PL                               
Sbjct: 879  DGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPSCKKSEFFDDGSVGSGFDLPDKDC 937

Query: 399  ----------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
                         + FE FL      +PD D++F  + +     Y +  +G + V +  T
Sbjct: 938  PDCGEAFTKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVFRAGT 997

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
             G++  K A           Y  V                 +  A+D   R   L    V
Sbjct: 998  IGTVADKTA-----------YGYV-----------------KGYAND---RNLILRGAEV 1026

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV-------------RSDLPV 555
            DRL   S    G+ R    H  GI++        VP Y D+              S+   
Sbjct: 1027 DRL---SAGCTGVRRSTGQHPGGIIV--------VPDYMDIFDFSPIQYPADDQSSEWKT 1075

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY------ 609
            T F+   I    L+K D LG    T+++   D        +D   IP DD          
Sbjct: 1076 THFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPYVMKIFSGT 1129

Query: 610  --------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
                     ++   GTLGI +  +  +RQ LE  +P    +++ +  L       ++ + 
Sbjct: 1130 ESLGVTEEQIMCKTGTLGIPEFGTRFVRQMLEDTKPSTFSELVQISGLSHG---TDVWLG 1186

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N ++    K  ++  +I     +    +IY+     +A     + + E+    + +  + 
Sbjct: 1187 NAQELIHNKTCTLSEVIG-CRDDIMVYLIYKGLDPSMA-----FKIMESVRKGKGLSDEF 1240

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            KEEM            KN +      +  ++      Y F K+HAAAY +++ + A+ K 
Sbjct: 1241 KEEM-----------IKNDVPAWYIDSCLKI-----KYMFPKAHAAAYVLMAVRIAYFKV 1284

Query: 782  HYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS------------ 820
            H+P+ + AA  T+  D+ +          I+K  ++     ++  P              
Sbjct: 1285 HFPLMYYAAYFTVRADDFDIDTMVKGSAAIRKVVEEINAKGLEASPKEKSLLTVMELALE 1344

Query: 821  -------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
                           +   DF +  + +     +I G+GT  A +I+ + AD  F S ED
Sbjct: 1345 MSERGFSFKKVDLYKSSATDFLIEGDSLIPPFNSIPGLGTNAAINIVNSRADGEFLSKED 1404

Query: 868  FCSRVDSKKLNRRVLESLVFAGAL 891
               R    ++++ +LE L   G L
Sbjct: 1405 LQQR---GRISKTILEYLDNHGCL 1425


>gi|282850817|ref|ZP_06260191.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            gasseri 224-1]
 gi|282557769|gb|EFB63357.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            gasseri 224-1]
          Length = 1389

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 162/775 (20%), Positives = 297/775 (38%), Gaps = 169/775 (21%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT +S ++   +     +L+A   S      +R +  PD +  +  EM+  FS L E
Sbjct: 681  PVVATGDSHYVEPHEAIYRKILLAAQKSN----PNRNKKLPDLHFYSTQEMLDAFSFLGE 736

Query: 270  ------ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAVAGLE 320
                   +ENT ++A +   I  + + + P  IE   +E  D+   +  EL  K +  + 
Sbjct: 737  DVAKEIVIENTNKLADQIEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKI- 795

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                               R++ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 796  ----------------VEDRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 838

Query: 381  GAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFC-----QDR 426
               S+ A    IT+++PL         ++S  FE         +PD +   C     +D 
Sbjct: 839  VGSSLVATMSGITEVNPLAPHYRCPKCKYSKFFENGEYGSGYDLPDKNCPKCGTPLVKDG 898

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +D         +G ++V  I    S   +    +  R +              P++    
Sbjct: 899  QDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNYIRVM------------FGPDNSFRA 945

Query: 487  VSLQAIADDSRF---------REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--G 535
             ++  +AD + +          E  L +  +DRL   +    G+ R    H AGIV+   
Sbjct: 946  GTIATVADKTAYGYVKHYEDENELHLRNAELDRL---AAGASGVKRTTGQHPAGIVVVPD 1002

Query: 536  DRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            D  +    P+     D+ +    T F+   I    ++KFD LG    T+++     + Q 
Sbjct: 1003 DMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHD-NILKFDILGHDDPTMIR-----MLQD 1056

Query: 593  GVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPD 638
               +D   IP DD     L ++               GTLG+ +  +  +R  LE  +P 
Sbjct: 1057 LSGIDPLTIPPDDPGVMSLFSSPKILGVTPEQIQSKTGTLGVPEFGTKFVRGMLEETKPT 1116

Query: 639  CIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
               +++ +  L        G  ++++      NG  K+ ++    D ++ +     +  E
Sbjct: 1117 TFSELLQISGLSHGTDVWLGNAEDLI-----NNGTCKLKNVIGCRDNIMMDLIHWGVKPE 1171

Query: 694  -QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
                 +  +  G  +S+ ++       +I ++ DK  + +I    K              
Sbjct: 1172 VAFFTMESVRHGKGISDENM-------EILKKNDKIPDWYIPSCLK-------------- 1210

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD------------NVE 800
                  Y F K+HA AY +++ + AW K +YPV + A+  ++  D             V+
Sbjct: 1211 ----IKYMFPKAHATAYILMALRIAWFKVYYPVIYYASYFSVRADLFDLVAMSHGKNTVK 1266

Query: 801  KIKKFCQD---------------------ARQFNIQIMPPSVN-TPCVDFK-VGDNRIYY 837
               K  QD                       +  I+I    VN +  +DFK + D+ I  
Sbjct: 1267 AAMKEIQDKGMDVSAKDKSLLTVLEIANECLERGIKIKMVDVNESEAMDFKIIDDHTILA 1326

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               A+ G+G   A+ I+ A A++ F S ED  +R    K+++ ++E     G L+
Sbjct: 1327 PFNAVPGLGDNAAKQIVAARAEQKFLSKEDLATR---GKVSQTIMEYFENNGVLE 1378


>gi|289578391|ref|YP_003477018.1| DNA polymerase III subunit alpha [Thermoanaerobacter italicus Ab9]
 gi|289528104|gb|ADD02456.1| DNA polymerase III, alpha subunit [Thermoanaerobacter italicus Ab9]
          Length = 1406

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 199/941 (21%), Positives = 353/941 (37%), Gaps = 222/941 (23%)

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +   D+ D L+ +       P V  + +LV    G + L E++S+  L +   ++ R
Sbjct: 558  LGVKKVKDINDILRESEVDIKKLP-VYHVTILVKDQRGLRNLYEIISKSNL-EYFHRTPR 615

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYV 184
            I  S L  +  EGLI+ +    G + RA   N  +   + +++F      + +  +   +
Sbjct: 616  IPKSLLISM-REGLIIGSACEQGEVFRAILSNLEEKKLENIISFYDYLEVQPVGNNEFLI 674

Query: 185  NLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                 +  +  +E   ++  L   +   +VAT +  FL   D     +LMA         
Sbjct: 675  EKGEVKSVEELKEINRRIYLLGKKYNKLVVATGDVHFLDPWDDIYRKILMAGK-----GY 729

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPI----LPRFI 296
            KD  R  P  Y K   EM+  F  L E  A E  ++   + + +++   PI     P  I
Sbjct: 730  KDADR-QPPLYFKTTDEMLKEFEYLGEEVAKEIVIDNPNKIADLIEEVKPIPDGTFPPVI 788

Query: 297  EKECDDIQK---EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            E   ++++K   ++ +E+    +  +                  + RLD ELN I    +
Sbjct: 789  EGAEEELRKLTLDKAHEIYGDPLPEI-----------------VQNRLDRELNSIINNGY 831

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--------------- 398
            +  ++I    +  + K+   VG  RGS   S+ A    IT+++PL               
Sbjct: 832  AVMYIIAQKLVSKSLKDGYLVG-SRGSVGSSLVATMSGITEVNPLPPHYVCPNCKYSEFI 890

Query: 399  --------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                                       F + FE FL  +    PD D++F  + +    +
Sbjct: 891  TDGSYGCGVDMPDKICPHCGTLMKKDGFDIPFEVFLGFEGDKEPDIDLNFSGEYQPIAHK 950

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPV 487
            Y +  +G   V +  T G+L  K A   V      R+L +  S++ RL            
Sbjct: 951  YTEELFGKGHVFRAGTIGTLADKTAYGFVKKYFEERSLVVHKSEIKRL------------ 998

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPM 545
                                       +    G+ R    H  GI++   D+ +    P+
Sbjct: 999  ---------------------------TMGCTGVKRTTGQHPGGIMVVPKDKSIYDFTPI 1031

Query: 546  YRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                    +D+  T F+   I    L+K D LG    T+++   D        V+   IP
Sbjct: 1032 QHPADAEDTDVITTHFDYHSIS-GRLLKLDILGHDDPTVIRMLEDLTG-----VNAREIP 1085

Query: 603  FDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             DD +T  L T+               GTLG+ +  +  +RQ L   +P    +++ +  
Sbjct: 1086 LDDKKTMSLFTSVEALGIDPEELNTPVGTLGLPEFGTKFVRQMLIETRPTTFAELVRISG 1145

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            L       ++ + N +   +E I +        LKE   VI  ++ +M        Y +S
Sbjct: 1146 LSHGT---DVWLNNAQDIIREGIAT--------LKE---VISTRDDIML-------YLIS 1184

Query: 709  EADVLRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +   + + +  KI E + K K      I    K+G+      N F    +   Y F K+H
Sbjct: 1185 KG--MDKKLSFKIMENVRKGKGVTPEEIEEMKKHGVP-----NWFIESCQKIKYMFPKAH 1237

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQ--DARQFNI 814
            A AY +++++ A+ K HYP  F A   T+  D+          + IK   +  +A+  N 
Sbjct: 1238 AVAYVIMAFRIAYFKVHYPEAFYATYFTVRADDFNLDIVLKGRDSIKNAIKEIEAKGNNA 1297

Query: 815  QIMPPSVNT-----------------------PCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
                 S+ T                         V F + +  I   L +++GVG   A+
Sbjct: 1298 SPKEKSLLTVLEVALEMYLRGFKFINVDLYKSDAVKFLITNEGILPPLNSLEGVGIQAAK 1357

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I +   +  F S+EDF +R    K+++ V+E L   G L+
Sbjct: 1358 TIAQERENGKFLSVEDFRNRT---KVSKTVIEILRKYGCLN 1395


>gi|297544667|ref|YP_003676969.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
            subsp. mathranii str. A3]
 gi|296842442|gb|ADH60958.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
            subsp. mathranii str. A3]
          Length = 1406

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 199/941 (21%), Positives = 353/941 (37%), Gaps = 222/941 (23%)

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +   D+ D L+ +       P V  + +LV    G + L E++S+  L +   ++ R
Sbjct: 558  LGVKKVKDINDILRESEVDIKKLP-VYHVTILVKDQRGLRNLYEIISKSNL-EYFHRTPR 615

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYV 184
            I  S L  +  EGLI+ +    G + RA   N  +   + +++F      + +  +   +
Sbjct: 616  IPKSLLISM-REGLIIGSACEQGEVFRAILSNLEEKKLENIISFYDYLEVQPVGNNEFLI 674

Query: 185  NLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                 +  +  +E   ++  L   +   +VAT +  FL   D     +LMA         
Sbjct: 675  EKGEIKSVEELKEINRRIYLLGKKYNKLVVATGDVHFLDPWDDIYRKILMAGK-----GY 729

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPI----LPRFI 296
            KD  R  P  Y K   EM+  F  L E  A E  ++   + + +++   PI     P  I
Sbjct: 730  KDADR-QPPLYFKTTDEMLKEFEYLGEEVAKEIVIDNPNKIADLIEEVKPIPDGTFPPVI 788

Query: 297  EKECDDIQK---EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            E   ++++K   ++ +E+    +  +                  + RLD ELN I    +
Sbjct: 789  EGAEEELRKLTLDKAHEIYGDPLPEI-----------------VQNRLDRELNSIINNGY 831

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--------------- 398
            +  ++I    +  + K+   VG  RGS   S+ A    IT+++PL               
Sbjct: 832  AVMYIIAQKLVSKSLKDGYLVG-SRGSVGSSLVATMSGITEVNPLPPHYVCPNCKYSEFI 890

Query: 399  --------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                                       F + FE FL  +    PD D++F  + +    +
Sbjct: 891  TDGSYGCGVDMPDKICPHCGTLMKKDGFDIPFEVFLGFEGDKEPDIDLNFSGEYQPIAHK 950

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPV 487
            Y +  +G   V +  T G+L  K A   V      R+L +  S++ RL            
Sbjct: 951  YTEELFGKGHVFRAGTIGTLADKTAYGFVKKYFEERSLVVHKSEIKRL------------ 998

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPM 545
                                       +    G+ R    H  GI++   D+ +    P+
Sbjct: 999  ---------------------------TMGCTGVKRTTGQHPGGIMVVPKDKSIYDFTPI 1031

Query: 546  YRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                    +D+  T F+   I    L+K D LG    T+++   D        V+   IP
Sbjct: 1032 QHPADAEDTDVITTHFDYHSI-SGRLLKLDILGHDDPTVIRMLEDLTG-----VNAREIP 1085

Query: 603  FDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             DD +T  L T+               GTLG+ +  +  +RQ L   +P    +++ +  
Sbjct: 1086 LDDKKTMSLFTSVEALGIDPEELNTPVGTLGLPEFGTKFVRQMLIETRPTTFAELVRISG 1145

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            L       ++ + N +   +E I +        LKE   VI  ++ +M        Y +S
Sbjct: 1146 LSHGT---DVWLNNAQDIIREGIAT--------LKE---VISTRDDIML-------YLIS 1184

Query: 709  EADVLRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +   + + +  KI E + K K      I    K+G+      N F    +   Y F K+H
Sbjct: 1185 KG--MDKKLSFKIMENVRKGKGVTPEEIEEMKKHGVP-----NWFIESCQKIKYMFPKAH 1237

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQ--DARQFNI 814
            A AY +++++ A+ K HYP  F A   T+  D+          + IK   +  +A+  N 
Sbjct: 1238 AVAYVIMAFRIAYFKVHYPEAFYATYFTVRADDFNLDIVLKGRDSIKNAIKEIEAKGNNA 1297

Query: 815  QIMPPSVNT-----------------------PCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
                 S+ T                         V F + +  I   L +++GVG   A+
Sbjct: 1298 SPKEKSLLTVLEVALEMYLRGFKFINVDLYKSDAVKFLITNEGILPPLNSLEGVGIQAAK 1357

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I +   +  F S+EDF +R    K+++ V+E L   G L+
Sbjct: 1358 TIAQERENGKFLSVEDFRNRT---KVSKTVIEILRKYGCLN 1395


>gi|322382351|ref|ZP_08056258.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
            larvae B-3650]
 gi|321153704|gb|EFX46079.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
            larvae B-3650]
          Length = 1437

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 169/798 (21%), Positives = 300/798 (37%), Gaps = 214/798 (26%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P++AT N  +L   D    D+ +    +     KD  +  PD + +  S+M+  F  L +
Sbjct: 729  PVIATGNVHYLHPRDKVCRDITIN-GITGFSPLKDMKK--PDAHFRTTSDMLEQFQFLGK 785

Query: 270  ------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
                   ++NT E+A R           L  F +K    I +  + E+R K         
Sbjct: 786  EKAYEVVVKNTNELADRFEE--------LELFPDKLFTPIIEGADEEIRTKCYN------ 831

Query: 324  AQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                 AK  + +D  Q    RL+ EL  I +  FS  +LI    ++ + ++   VG  RG
Sbjct: 832  ----TAKQIYGEDLPQVIIDRLEKELVPIIKYGFSANYLISERLVKKSNEDGYLVG-SRG 886

Query: 380  SGAGSVTAYALTITDIDPL----------------------RFSL--------------- 402
            S   SV A  L I++++PL                       F L               
Sbjct: 887  SVGSSVVAMMLGISEVNPLPPHYICSSCKHSEWFMDGSVPSGFDLPDKECPHCGGKLKGE 946

Query: 403  ----LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
                 FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K A 
Sbjct: 947  GQDIPFETFLGFKGDKVPDIDLNFSGEYQPVAHNYTKVLFGEKNVFRAGTIGTVAEKTAF 1006

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V +     Y +                SL       ++R A ++         ++   
Sbjct: 1007 GYVKK-----YEE----------------SL-----GKKWRNAEIS--------RLASGC 1032

Query: 519  EGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             G+ R    H  GIV+      +  + P+     D +S+   T F+    + A L+K D 
Sbjct: 1033 TGVKRSTGQHPGGIVVVPDYIEVDDITPVQFPADDTKSEWKTTHFDYHAFD-ANLLKLDI 1091

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLG 619
            LG    T+++   D        VD   IP +D +   +  +               GT G
Sbjct: 1092 LGHDDPTMMRMLQDLTG-----VDPLKIPMNDPKVMSIFNSTDALGVTPEQIRSPVGTFG 1146

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI- 678
            + ++ +  +RQ L+  QP    D++ +  L        + + N ++  ++ I SI  +I 
Sbjct: 1147 VPEMGTKFVRQMLQETQPSSFADLLQISGLSHG---TGVWLGNAQELIRKGICSIKTVIG 1203

Query: 679  ---DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG--KKIKEEMDKQK--ER 731
               D ML      +IY+      A + +G +    + +R+  G   + KEEM K    + 
Sbjct: 1204 CRDDIML-----YLIYK------AGMDAGLAFKITESVRKGKGLTDEWKEEMKKHNVPDW 1252

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I    +                   +Y F K+HAAAY + + +TA+ K ++P+ F A  
Sbjct: 1253 YIESCER------------------IEYMFPKAHAAAYVISAVRTAYYKLYHPIAFYATY 1294

Query: 792  MTLEMDNVEKIKKFCQ------------DARQFN--------IQIMPPSVNTPCVDFKVG 831
             ++  ++ E +   CQ            + + F         I I+  ++      F   
Sbjct: 1295 FSVRAEDFE-LDLLCQGYDTILKRLIEIEEKGFQALPKERAMISILEMALEMTARGFSFK 1353

Query: 832  DNRIYYS---------------LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
               +Y S                +A+ G+G   A++I  +     F S+EDF +R    K
Sbjct: 1354 PVDLYRSEANKFIIDGDSLIPPFSAVPGIGENAAKNIAASREGGDFLSIEDFQTRA---K 1410

Query: 877  LNRRVLESLVFAGALDCF 894
            +++ ++E L   G + CF
Sbjct: 1411 VSKSIVELL---GQMGCF 1425


>gi|270290316|ref|ZP_06196541.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4]
 gi|270281097|gb|EFA26930.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4]
          Length = 1436

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 202/922 (21%), Positives = 345/922 (37%), Gaps = 235/922 (25%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI---- 155
            VL+  T  G + L +LVS +  +    +  RI  S L+ +  EG+I+ +  SSG +    
Sbjct: 614  VLIAKTQAGLKNLFKLVS-LSNVKYFYRVPRIPRSELERL-REGIIVGSACSSGEVFTAM 671

Query: 156  ---------DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE--SQVVQLA 204
                     DRA F++  +V  K +  ++ L    +  +       ++  E    +V+L 
Sbjct: 672  AQKGYVEARDRAKFYDYLEVMPKPV--YQPLIDQEIVSDT------NKLEEIIGNIVKLG 723

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
               ++P+VAT +  +L+ +D     +L  +      +  +R  + PD + +   EM+  F
Sbjct: 724  KDLDIPVVATGDVHYLNPQDAIYRKIL--INSQGGANPLNRTEL-PDVHFRTTDEMLEAF 780

Query: 265  SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
              L E   + + +               P  I    DDI   ++ +L    + G E R+ 
Sbjct: 781  RFLGEETAHQIVVEN-------------PNQIADSIDDISPVKD-KLYTPKMPGAEDRIK 826

Query: 325  QGAIAKGYHA-------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
            Q A+ +  HA       +   +RLD EL  I    FS  +LI    +  + K+   VG  
Sbjct: 827  QLAMDQA-HALYGKELPEIVSERLDKELTSIIGNGFSVIYLIAQRLVHKSNKDGYLVG-S 884

Query: 378  RGSGAGSVTAYALTITDIDPL---------RFS--------------------------- 401
            RGS   S  A    IT+++PL         ++S                           
Sbjct: 885  RGSVGSSFVATMSGITEVNPLPPHYRCPNCQYSHFYTKGEYGSGYDLPDKKCPECGTLMI 944

Query: 402  -----LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
                 + FE FL      +PD D++F  D +     Y+Q  +G   V +  T G++  K 
Sbjct: 945  GDGQDIPFETFLGFKGDKVPDIDLNFSGDYQPIAHNYMQVLFGKNNVFRAGTIGTVADKT 1004

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A   V +A +   +Q                               L    ++RL   ++
Sbjct: 1005 AYGYV-KAYERDTNQ------------------------------HLRGAEIERL---AK 1030

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWI 563
               G+ R    H AGI+I        VP Y D+    P+             T F+   I
Sbjct: 1031 GATGVKRTTGQHPAGILI--------VPDYMDIYDFSPIQYPADDQTAAWETTHFDFHSI 1082

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL----------- 612
                ++K D LG    T+++K  D        +D   IP DD     +            
Sbjct: 1083 HD-NILKMDILGHDDPTMIRKLQDLSG-----IDPQTIPTDDPGVMKIFSGPEVLGVTEE 1136

Query: 613  ---TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
               +  GTLGI +  +  +R  LE   P    +++ +  L       ++ + N  +  K 
Sbjct: 1137 QIKSKTGTLGIPEFGTRFVRGMLEETHPTTYSELLQISGLSHG---TDVWLGNAEELIKA 1193

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
              +++           + VI  ++ +M     L  Y L            KI E + K K
Sbjct: 1194 GTITL-----------KDVIGCRDNIMMD---LIHYGLDSQSSF------KIMESVRKGK 1233

Query: 730  ERFISGASKNGISKTIAVNI----FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
                 G  +    K  A N+     E   K   Y F ++HA+AY +++ + A+ K +YP+
Sbjct: 1234 -----GIPEGYEEKMRAANVPDWYIESCGKIK-YMFPRAHASAYVLMALRIAYFKVYYPL 1287

Query: 786  EFLAASMTLEMDNV---------EKIKKFCQD---------ARQFNI--------QIMPP 819
             + AA  T+  D+          E +K   Q+         A++ N+        +++  
Sbjct: 1288 VYYAAYFTVRADDFDIVAMSRGKESLKNRMQEINDKGNEASAKEKNLLTVLELANEMVER 1347

Query: 820  SVNTPCVDFKVGD--------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              N   +D +  D        + +     A+ G+G   A+ I+ A ADKPF S ED   R
Sbjct: 1348 GFNFKMIDLEKSDAEEWLIDGDSLIAPFNALPGLGLNVAKQIVAARADKPFLSKEDLAKR 1407

Query: 872  VD-SKKLNRRVLESLVFAGALD 892
               S+ L   + E+ V AG  D
Sbjct: 1408 GHVSQTLIDFMTENNVLAGLPD 1429


>gi|304384865|ref|ZP_07367211.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284]
 gi|304329059|gb|EFL96279.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284]
          Length = 1436

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 202/922 (21%), Positives = 345/922 (37%), Gaps = 235/922 (25%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI---- 155
            VL+  T  G + L +LVS +  +    +  RI  S L+ +  EG+I+ +  SSG +    
Sbjct: 614  VLIAKTQAGLKNLFKLVS-LSNVKYFYRVPRIPRSELERL-REGIIVGSACSSGEVFTAM 671

Query: 156  ---------DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE--SQVVQLA 204
                     DRA F++  +V  K +  ++ L    +  +       ++  E    +V+L 
Sbjct: 672  AQKGYVEARDRAKFYDYLEVMPKPV--YQPLIDQEIVSDT------NKLEEIIGNIVKLG 723

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
               ++P+VAT +  +L+ +D     +L  +      +  +R  + PD + +   EM+  F
Sbjct: 724  KDLDIPVVATGDVHYLNPQDAIYRKIL--INSQGGANPLNRTEL-PDVHFRTTDEMLEAF 780

Query: 265  SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
              L E   + + +               P  I    DDI   ++ +L    + G E R+ 
Sbjct: 781  RFLGEETAHQIVVEN-------------PNQIADSIDDISPVKD-KLYTPKMPGAEDRIK 826

Query: 325  QGAIAKGYHA-------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
            Q A+ +  HA       +   +RLD EL  I    FS  +LI    +  + K+   VG  
Sbjct: 827  QLAMDQA-HALYGKELPEIVSERLDKELTSIIGNGFSVIYLIAQRLVHKSNKDGYLVG-S 884

Query: 378  RGSGAGSVTAYALTITDIDPL---------RFS--------------------------- 401
            RGS   S  A    IT+++PL         ++S                           
Sbjct: 885  RGSVGSSFVATMSGITEVNPLPPHYRCPNCQYSHFYTKGEYGSGYDLPDKKCPECGTLMI 944

Query: 402  -----LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
                 + FE FL      +PD D++F  D +     Y+Q  +G   V +  T G++  K 
Sbjct: 945  GDGQDIPFETFLGFKGDKVPDIDLNFSGDYQPIAHNYMQVLFGKNNVFRAGTIGTVADKT 1004

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A   V +A +   +Q                               L    ++RL   ++
Sbjct: 1005 AYGYV-KAYERDTNQ------------------------------HLRGAEIERL---AK 1030

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWI 563
               G+ R    H AGI+I        VP Y D+    P+             T F+   I
Sbjct: 1031 GATGVKRTTGQHPAGILI--------VPDYMDIYDFSPIQYPADDQTAAWETTHFDFHSI 1082

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL----------- 612
                ++K D LG    T+++K  D        +D   IP DD     +            
Sbjct: 1083 HD-NILKMDILGHDDPTMIRKLQDLSG-----IDPQTIPTDDPGVMKIFSGPEVLGVTEE 1136

Query: 613  ---TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
               +  GTLGI +  +  +R  LE   P    +++ +  L       ++ + N  +  K 
Sbjct: 1137 QIKSKTGTLGIPEFGTRFVRGMLEETHPTTYSELLQISGLSHG---TDVWLGNAEELIKA 1193

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
              +++           + VI  ++ +M     L  Y L            KI E + K K
Sbjct: 1194 GTITL-----------KDVIGCRDNIMMD---LIHYGLDSQSSF------KIMESVRKGK 1233

Query: 730  ERFISGASKNGISKTIAVNI----FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
                 G  +    K  A N+     E   K   Y F ++HA+AY +++ + A+ K +YP+
Sbjct: 1234 -----GIPEGYEEKMRAANVPDWYIESCGKIK-YMFPRAHASAYVLMALRIAYFKVYYPL 1287

Query: 786  EFLAASMTLEMDNV---------EKIKKFCQD---------ARQFNI--------QIMPP 819
             + AA  T+  D+          E +K   Q+         A++ N+        +++  
Sbjct: 1288 VYYAAYFTVRADDFDIVAMSRGKESLKNRMQEINDKGNEASAKEKNLLTVLELANEMVER 1347

Query: 820  SVNTPCVDFKVGD--------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              N   +D +  D        + +     A+ G+G   A+ I+ A ADKPF S ED   R
Sbjct: 1348 GFNFKMIDLEKSDAEEWLIDGDSLIAPFNALPGLGLNVAKQIVAARADKPFLSKEDLAKR 1407

Query: 872  VD-SKKLNRRVLESLVFAGALD 892
               S+ L   + E+ V AG  D
Sbjct: 1408 GHVSQTLIDFMTENNVLAGLPD 1429


>gi|116629466|ref|YP_814638.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri ATCC
            33323]
 gi|116095048|gb|ABJ60200.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
            gasseri ATCC 33323]
          Length = 1432

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 162/775 (20%), Positives = 297/775 (38%), Gaps = 169/775 (21%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT +S ++   +     +L+A   S      +R +  PD +  +  EM+  FS L E
Sbjct: 724  PVVATGDSHYVEPHEAIYRKILLAAQKSN----PNRNKKLPDLHFYSTQEMLDAFSFLGE 779

Query: 270  ------ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAVAGLE 320
                   +ENT ++A +   I  + + + P  IE   +E  D+   +  EL  K +  + 
Sbjct: 780  DVAKEIVIENTNKLADQIEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKI- 838

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                               R++ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 839  ----------------VEDRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 881

Query: 381  GAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFC-----QDR 426
               S+ A    IT+++PL         ++S  FE         +PD +   C     +D 
Sbjct: 882  VGSSLVATMSGITEVNPLAPHYRCPKCKYSKFFENGEYGSGYDLPDKNCPKCGTPLVKDG 941

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +D         +G ++V  I    S   +    +  R +              P++    
Sbjct: 942  QDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNYIRVM------------FGPDNSFRA 988

Query: 487  VSLQAIADDSRF---------REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--G 535
             ++  +AD + +          E  L +  +DRL   +    G+ R    H AGIV+   
Sbjct: 989  GTIATVADKTAYGYVKHYEDENELHLRNAELDRL---AAGASGVKRTTGQHPAGIVVVPD 1045

Query: 536  DRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            D  +    P+     D+ +    T F+   I    ++KFD LG    T+++     + Q 
Sbjct: 1046 DMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHD-NILKFDILGHDDPTMIR-----MLQD 1099

Query: 593  GVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPD 638
               +D   IP DD     L ++               GTLG+ +  +  +R  LE  +P 
Sbjct: 1100 LSGIDPLTIPPDDPGVMSLFSSPKILGVTPEQIQSKTGTLGVPEFGTKFVRGMLEETKPT 1159

Query: 639  CIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
               +++ +  L        G  ++++      NG  K+ ++    D ++ +     +  E
Sbjct: 1160 TFSELLQISGLSHGTDVWLGNAEDLI-----NNGTCKLKNVIGCRDNIMMDLIHWGVKPE 1214

Query: 694  -QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
                 +  +  G  +S+ ++       +I ++ DK  + +I    K              
Sbjct: 1215 VAFFTMESVRHGKGISDENM-------EILKKNDKIPDWYIPSCLK-------------- 1253

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD------------NVE 800
                  Y F K+HA AY +++ + AW K +YPV + A+  ++  D             V+
Sbjct: 1254 ----IKYMFPKAHATAYILMALRIAWFKVYYPVIYYASYFSVRADLFDLVAMSHGKNTVK 1309

Query: 801  KIKKFCQD---------------------ARQFNIQIMPPSVN-TPCVDFK-VGDNRIYY 837
               K  QD                       +  I+I    VN +  +DFK + D+ I  
Sbjct: 1310 AAMKEIQDKGMDVSAKDKSLLTVLEIANECLERGIKIKMVDVNESEAMDFKIIDDHTILA 1369

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               A+ G+G   A+ I+ A A++ F S ED  +R    K+++ ++E     G L+
Sbjct: 1370 PFNAVPGLGDNAAKQIVAARAEQKFLSKEDLATR---GKVSQTIMEYFENNGVLE 1421


>gi|187935470|ref|YP_001885466.1| DNA polymerase III PolC [Clostridium botulinum B str. Eklund 17B]
 gi|187723623|gb|ACD24844.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum B str. Eklund 17B]
          Length = 1452

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 192/906 (21%), Positives = 328/906 (36%), Gaps = 207/906 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I++L  T  G + L +L+S+ ++ D   +  R   + L E   EGLI+ +   +G + +A
Sbjct: 631  IIILAKTQAGLKNLYKLISKSHI-DNFFRRPRTPKTLLSEF-REGLIIGSACEAGEVYKA 688

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
                 S    K ++ F      + +  +   +     +  +  R+   ++ +L      P
Sbjct: 689  VLEGRSDDEIKEIIEFYDYVEIQPIDNNNFLIAKGSVKDEEELRDINRKIYRLGKECNKP 748

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
             VAT +  FL+  D     ++MA       S  D     P  YLK   EM+  FS L + 
Sbjct: 749  TVATGDVHFLNPNDEAFRKIIMA---GQGFSDADN---QPPLYLKTTEEMLKEFSYLGKD 802

Query: 270  -ALENTVEIARRCSFILQVHAPI----LPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
             A E  ++  ++ S  + V  PI     P  IE   +DI+    N   NKA         
Sbjct: 803  IAREVVIDNPKKISDSIGVLKPIPDETYPPKIEGAEEDIK----NMTLNKA--------- 849

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              AI      +  ++RLD ELN I    ++  +LI    +  + ++   VG  RGS   S
Sbjct: 850  -HAIYGEVLPEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSTEDGYLVG-SRGSVGSS 907

Query: 385  VTAYALTITDIDPL-----------------------------------------RFSLL 403
              A    IT+++ L                                            + 
Sbjct: 908  FVATMSDITEVNGLPPHYVCPKCKKSEFFLDGSISSGADLPDKNCPDCDVPYIKDGHDIP 967

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  +    PD D++F  + +  V RY +  +G     +  T G++  K A   V +
Sbjct: 968  FETFLGFEGDKEPDIDLNFSGEYQGVVHRYTEVLFGKGHTFKAGTIGTIAEKTAYGYVKK 1027

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             L                                 RE   +   ++RL   +    G+ R
Sbjct: 1028 YLDE-------------------------------REIITSSAEIERL---TLGCTGIKR 1053

Query: 524  HASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                H  GI++   D  +    P+     D  +D+  T F+   I    L+K D LG   
Sbjct: 1054 TTGQHPGGIMVVPADNEIYNFCPIQHPADDNDTDVVTTHFDYHSIS-GRLLKLDILGHDD 1112

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE------SSGM---- 628
             T+L+     + Q    +D   IP +D +   L T+   LG+ + E      S G+    
Sbjct: 1113 PTVLR-----MLQDLTGLDPKTIPLNDEKVLSLFTSPEALGVTKEELECEVGSYGLPEFG 1167

Query: 629  ----RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI----DP 680
                R  L   QP    D++ +  L       ++ + N +   KE   ++   I    D 
Sbjct: 1168 TKFVRGMLVDTQPKTFADLVRISGLSHGT---DVWLNNAQYYIKEGFTTLRDCIATRDDI 1224

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            M+      +  +     + ++  G  LSE D       K +KE   +  E +I    K  
Sbjct: 1225 MVYLMYKGLPPKSAFTIMEKVRKGKGLSEDD------EKLMKEH--EVPEWYIGSCKK-- 1274

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
                              Y F K HA AY +++ + A+ K +YP  + A   T+  D+ +
Sbjct: 1275 ----------------IKYMFPKGHAVAYVMMAVRIAYYKVYYPEAYYATYFTVRADDFD 1318

Query: 801  ---------------------------------KIKKFCQDARQFNIQIMPPSV-NTPCV 826
                                              + + C +A +  ++ +   +  +  +
Sbjct: 1319 ANLVCLGDGAVHTKLQELYELGNNASVKDKGLITVLELCFEAYKRGVKFLRVDLYKSEGI 1378

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             FK+ D  +   L ++ GV    A+ I+EA     F S ED   R     +++ V+ESL 
Sbjct: 1379 KFKIEDGALRLPLNSLPGVADNAAKSIVEARVKGEFISKEDLRIRAG---VSKTVIESLS 1435

Query: 887  FAGALD 892
              G LD
Sbjct: 1436 NHGCLD 1441


>gi|224383926|gb|ACN42759.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 29/241 (12%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +  +  N      + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLNYDTKN-----SYLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY  L  IKG+       I+ E ++   F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGVIYVGLGKIKGLNRKVMDEIVKERNSHGLFSGLTDFLQRMAGSDIGESDIVQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKF 943
            L +AG+LD FGY+R +L                 +TN    I A E  G+   +  +   
Sbjct: 116  LTYAGSLDHFGYNRQEL-----------------KTNAASLITAMEFGGSLLSETKISAI 158

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVV 1002
               +   R  +E+ VLGF  SGHP+D  +  + K   KGY + +  ++ + I ++A M+ 
Sbjct: 159  GEMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVK---KGYTQ-INDLKADQIVKMAVMID 214

Query: 1003 S 1003
            S
Sbjct: 215  S 215


>gi|224383918|gb|ACN42755.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|224383920|gb|ACN42756.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|224383922|gb|ACN42757.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|224383924|gb|ACN42758.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|224383928|gb|ACN42760.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|312985350|gb|ADR30818.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 29/241 (12%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +  +  N      + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLNYDTKN-----SYLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY  L  IKG+       I+ E ++   F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGVIYVGLGKIKGLNRKVIDEIVKERNSHGLFSGLTDFLQRMAGSDIGESDIVQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKF 943
            L +AG+LD FGY+R +L                 +TN    I A E  G+   +  +   
Sbjct: 116  LTYAGSLDHFGYNRQEL-----------------KTNAASLITAMEFGGSLLSETKISAI 158

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVV 1002
               +   R  +E+ VLGF  SGHP+D  +  + K   KGY + +  ++ + I ++A M+ 
Sbjct: 159  GEMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVK---KGYTQ-INDLKADQIVKMAVMID 214

Query: 1003 S 1003
            S
Sbjct: 215  S 215


>gi|163815213|ref|ZP_02206590.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759]
 gi|158449408|gb|EDP26403.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759]
          Length = 1623

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 164/802 (20%), Positives = 304/802 (37%), Gaps = 166/802 (20%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++V+L      P+VAT +  FL+ EDY    ++M           D   + P  Y +   
Sbjct: 866  RIVELGEMFNKPVVATCDVHFLNPEDYIYRAIIMKSKGF------DDADMQPPLYFRTTE 919

Query: 259  EMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            EM++ F  L         + NT  IA     I  V     P  IE    D    +    +
Sbjct: 920  EMLAEFQYLGSDKAREVVITNTNMIADMVERIEPVRPDKAPPIIENS--DQTLTDICYTK 977

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
               + G E+                ++RLD EL+ I    F+  ++I    +  +  +  
Sbjct: 978  AHQIYGPEL------------PPQVQERLDRELHSIISNGFAVMYIIAQKLVWDSNDHGY 1025

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLL----------------------------- 403
             VG  RGS   S  A    IT+++PL    +                             
Sbjct: 1026 LVG-SRGSVGSSFVATMAGITEVNPLSAHYICPKCHFVDFDSELVKSYSGMSGCDMPDRD 1084

Query: 404  ----------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                            FE FL  +    PD D++F  + + +   Y +  +G  +  +  
Sbjct: 1085 CPNCGTPLIKEGHDIPFETFLGFNGDKEPDIDLNFSGEYQSKAHAYTEVLFGKGKAFKAG 1144

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G +  K A   V    +  +S+ + + +   +      + +   +++   + R     
Sbjct: 1145 TVGGVAEKTAFGYVYNYFK-DHSKEELMAEAKASGMDEKAAKKYAEENATVTKRRC---E 1200

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYR---DVRSDLPVTQFNMKW 562
            ++RL   +    G+ R    H  G+++  R   +    P+     DV SD+  + F    
Sbjct: 1201 MERL---ALGCTGVRRTTGQHPGGMIVLPRHEEIYSFTPIQHPANDVTSDIITSHFEYHS 1257

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-TTK------ 615
            I+   L+K D LG    T++++  D        +D + I  DD +   L  +TK      
Sbjct: 1258 IDH-NLLKLDILGHDDPTMIRRLEDLTG-----LDATKIRLDDKDVMELFHSTKSLGITP 1311

Query: 616  --------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
                    G+LG+ +  +    Q L   +P C  D++ +  L     +          N 
Sbjct: 1312 EDINGIPLGSLGVPEFGTDFAMQMLIDAKPTCFSDLVRIAGLAHGTDV-------WLGNA 1364

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E I S    I   +     +++Y   ++ +  L +G + +  + +R+ +  K K   DK
Sbjct: 1365 QELIKSGKCTISTAICCRDDIMVY---LIHMG-LDAGLAFNIMEKVRKGIVAKGK--CDK 1418

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
              E + +  + +G+      + +    +   Y F K+HAAAY +++++ AW K +YP+E+
Sbjct: 1419 W-EDWKAEMAAHGVP-----DWYVWSCQKIKYMFPKAHAAAYVMMAWRIAWFKVNYPLEY 1472

Query: 788  LAASMTLEMDN----------------------VEKIKKFCQD--------------ARQ 811
              A  ++  D+                      V+K K+  +D              AR 
Sbjct: 1473 YTAFFSIRADDFSYEMMCFGKERVLFHINEISKVDKNKRSAKDEGKLKDLKIVLEMYARG 1532

Query: 812  FNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
            ++   +P  +     D F++ D +I  S A+I+G+G   A+ + EA+   PF S E+   
Sbjct: 1533 YDF--VPIDIYKAKADRFQIIDGKIMPSFASIEGMGEKAAQQLYEAAQKGPFLSKEEINE 1590

Query: 871  RVDSKKLNRRVLESLVFAGALD 892
            R    K+ +  +E +   G LD
Sbjct: 1591 RA---KIGKGTIEKMSELGILD 1609


>gi|168334980|ref|ZP_02693097.1| DNA polymerase III, alpha subunit [Epulopiscium sp. 'N.t. morphotype
            B']
          Length = 1454

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 192/904 (21%), Positives = 339/904 (37%), Gaps = 192/904 (21%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
             PT   I+L V    G   L +LVS  +L D   +  R+  S + +   EGLI+ +   +
Sbjct: 623  LPTYXGIIL-VKNEIGRINLNKLVSASHL-DYFARRPRMPKSLIAQ-HREGLIIGSACEA 679

Query: 153  GPIDRAFFFNSSQVAE----KRLLTFKKLFGDRLYVNLQRHRGYDRYR----ESQVVQLA 204
            G +  A   +S+ +         L  +    +   +   +H    R        ++VQL 
Sbjct: 680  GEVFSALLRDSNNIESIVDFYDYLEIQPTMNNEFMIRSDKHAATSRKDLEDYNKRIVQLG 739

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
                  +VAT +  FL  ED     +LM          KD   + P  Y +   EM+  F
Sbjct: 740  EKCGKRVVATCDVHFLDPEDEIYRRILMDYK-----GFKD-ADLQPPLYFRTTDEMLDEF 793

Query: 265  SDLPEA------LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR----NK 314
            S L  A      +ENT  IA +   I    +P+LP     +C  +  + + ELR    +K
Sbjct: 794  SYLGSAKAYEVVVENTNAIATQIEKI----SPVLP----DKCPPVIADSDKELRKICYDK 845

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
            A       L +   A          RL+ ELN I    ++  ++I    +  +  +   V
Sbjct: 846  AHEIYGPDLPEPVTA----------RLERELNSIISNGYAVMYIIAQKLVWDSNDHGYLV 895

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLL------------------------------- 403
            G  RGS   S  A    IT+++PL    +                               
Sbjct: 896  G-SRGSVGSSFAATMSGITEVNPLAAHYICPQCFYTDFDTNSAGTSGCDIPDRNCPKCQT 954

Query: 404  ----------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
                      FE FL       PD D++F  + + +  +YV+  +G  +  +  T G++ 
Sbjct: 955  PLNKEGHDIPFETFLGFYGDKEPDIDLNFSGEYQSKAHKYVEVLFGEGKAFRAGTIGTVA 1014

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             K AL  V + L+                              R    R A+     +  
Sbjct: 1015 DKTALMYVFKYLE-----------------------------KRQLSKRRAE-----MRR 1040

Query: 514  ISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGL 568
            I+    G+ R    H  GI++   DR + +   +     DV +    T +    I+   L
Sbjct: 1041 IASGCTGVKRTTGQHPGGIIVVPHDRDIYEFCAVQHPANDVNTPXITTHYEYHSIDH-NL 1099

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            +K D LG    T++++  D        +  + I  D  +   L      LGI   + SG+
Sbjct: 1100 LKLDILGHDDPTIIRRLEDITG-----ISSATIRLDXKDVMALFHGTAVLGIQPADISGI 1154

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQG 687
            +    G+     + +I ++   +P    ++V  +   +G +  + +   LI+        
Sbjct: 1155 QLGSLGVPEFGTDFVIQMLLDAKPQNFSDLVRISGLSHGTDVWLGNAQTLIEEGKGTIST 1214

Query: 688  VIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            VI  ++  M       L +G + +  + +R+  GK +K E ++             + K 
Sbjct: 1215 VIXTRDDXMTYLISMGLEAGTAFTIMESVRK--GKGLKPEWEQAM-----------LEKD 1261

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD------- 797
            +  + +    K   Y F K+HAAAY +++++ AW K  +P+ +  A  ++          
Sbjct: 1262 VP-DWYIWSCKKIKYMFPKAHAAAYVMMAWRIAWYKVFHPLAYYTAFFSIRASSFNYELM 1320

Query: 798  ---------NVEKIKKFCQD--------------------ARQFNIQIMPPSVNTPC-VD 827
                     N++ I    +D                    AR F+ +  P  + T   VD
Sbjct: 1321 CFGKEKLEANMKAITSMPKDKQTAKDQDTLKDMRIVQEMYARGFSFK--PIDIFTASDVD 1378

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            F++ D +I  SL  I G+G   A  ++EA+ + PF S ++F +R    K+N+ V++ +  
Sbjct: 1379 FQIIDGQIMPSLGTIDGMGDKAAAMVVEAAKNGPFLSRDEFKTRT---KVNQTVIDKMYQ 1435

Query: 888  AGAL 891
             G L
Sbjct: 1436 LGML 1439


>gi|288556947|ref|YP_003428882.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4]
 gi|288548107|gb|ADC51990.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4]
          Length = 1432

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 201/923 (21%), Positives = 338/923 (36%), Gaps = 243/923 (26%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L  T EG + L +LVS M  ++   ++ RI  S LQ+   +GL++ T    G +    
Sbjct: 610  TILAQTQEGLKNLYQLVS-MSHVEYFFRTPRIPRSQLQK-HRKGLLIGTACDKGEVFEGM 667

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE--------------SQVVQLAY 205
               S +  E+      K +    Y+ +Q    Y    E              S +V+L  
Sbjct: 668  MQKSPEEVEE----IAKFYD---YLEIQPLENYQHLIEKELVKNDESLKEIVSNIVELGE 720

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
              + P+VAT N+ +L++ED     +L  +A     +  ++  + P H+ K   EM+  F+
Sbjct: 721  KLDKPVVATGNAHYLNKEDAIYRKIL--IASQGGANPLNKQTLPPVHF-KTTDEMIDAFA 777

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
             L +       +ENT ++A     I  +   +    IE   D+I+  E +  R +++ G 
Sbjct: 778  FLGDDKAKKLVVENTQKVADLVEEIHPIPDQLYTPKIEGADDEIR--EMSYSRARSIYGD 835

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
            ++             +    R++ EL  I    F+  +LI    ++ +  +   VG  RG
Sbjct: 836  DL------------PEIVEARIEKELKSIIGHGFAVIYLISQKLVKKSLIDGYLVG-SRG 882

Query: 380  SGAGSVTAYALTITDIDPL----------------------RFSL--------------- 402
            S   S  A    IT+++PL                       F L               
Sbjct: 883  SVGSSFVATMTEITEVNPLPPHYVCPNCQHSYFFNDGSVGSGFDLPDKDCPECGTAYVKD 942

Query: 403  ----LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
                 FE FL      +PD D++F  + +     Y +  +G E V +  T G++  K A 
Sbjct: 943  GQDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHHYTKELFGEEYVYRAGTIGTVAEKTAY 1002

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V +  Q  +                         D   R A      +DRL+      
Sbjct: 1003 GYV-KGYQGDH-------------------------DLHMRGAE-----IDRLV---SGC 1028

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEK 565
             G+ R +  H  GI++        VP Y D+    P+             T F+   I  
Sbjct: 1029 TGVKRTSGQHPGGIIV--------VPDYMDIYDFTPIQFPADDKTAEWKTTHFDFHSIHD 1080

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY--------------HL 611
              L+K D LG    T+++   D        +D   IP DD E                 +
Sbjct: 1081 -NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPDVLGVTEDQI 1134

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            L   GTLGI +  +  +RQ LE  +P    +++ +  L          V+ N  N     
Sbjct: 1135 LCKTGTLGIPEFGTRFVRQMLEETKPSTFSELVQISGLSH-----GTDVWLNNAN----- 1184

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA----DVLRRAMGKKIK--EEM 725
                 LI     E + VI  ++ +M +  +  G   S A    + +R+  G + +  EEM
Sbjct: 1185 ----ELIYNGTCELKDVIGCRDDIM-VYLIYKGLEPSLAFKIMEFVRKGKGLQPEWVEEM 1239

Query: 726  DKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             K    + +I   +K                    Y F K+HAAAY +++ + A+ K H+
Sbjct: 1240 KKHDVPDWYIGSCTK------------------IKYMFPKAHAAAYVLMAVRIAYFKVHH 1281

Query: 784  PVEFLAASMTLEMDN----------------VEKIKKFCQDA------------------ 809
            P+ + A+  T+  D+                +E+I     DA                  
Sbjct: 1282 PILYYASYFTVRADDFDLDTMIKGSTAIKAKIEEINAKGLDASPKEKAVLTVLELALEMC 1341

Query: 810  -RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
             R F+ + +     +   +F V    +     A+ GVGT  A +I++A     F S ED 
Sbjct: 1342 ERGFSFKKV-DLYESSATEFIVDGMSLLPPFNAMTGVGTNAALNIVKAREGGEFLSKEDL 1400

Query: 869  CSRVDSKKLNRRVLESLVFAGAL 891
              +    +L + VLE L   G L
Sbjct: 1401 QQKA---RLTKTVLEHLDDHGCL 1420


>gi|226313025|ref|YP_002772919.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
 gi|226095973|dbj|BAH44415.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
          Length = 1434

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 201/909 (22%), Positives = 331/909 (36%), Gaps = 217/909 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +LV   EG + L +LVSR ++ +   +  RI  S L +   EGL++ T    G + ++ 
Sbjct: 614  TILVQNKEGLKNLYKLVSRSHV-ETFFRWPRIQRSQLSKY-REGLLIGTACKDGELMQSI 671

Query: 160  FFNSSQVAEKRLLTF------------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
                S    K +  F              L  +    +L+  +GY      ++VQ+    
Sbjct: 672  LRGKSPEELKEVAAFYDFIEVQPISHYSPLLRNEEIPSLETMKGY----HEKIVQMGKEL 727

Query: 208  ELPLVATNNSLFLSEEDYEAHDV-LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
               +VAT +  FL+ +D    DV L++    T  +Q       P  Y     EM+  FS 
Sbjct: 728  GKLVVATGDVHFLNPQDEIFRDVFLLSKGDPTAGNQ-------PPLYFHTTDEMLEAFSF 780

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
            L E +   + +    + I  +   I P   +K    I +  ++ELR       + RL  G
Sbjct: 781  LGEEIAKEI-VVTNTNAIADMIEDISP-IPDKLYTPIIEGADDELRQMCYD--KARLLYG 836

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                    +    RL+ ELN I +  F   +LI    +  +  +   VG  RGS   S  
Sbjct: 837  DPL----PELVEHRLEKELNSIIKHGFGVIYLISQRLVTKSLNDGYLVG-SRGSVGSSFV 891

Query: 387  AYALTITDIDPL----------------------RFSL-------------------LFE 405
            A    IT+++PL                       F L                    FE
Sbjct: 892  ATMSEITEVNPLPPHYRCPNCKHSEFITDGSIASGFDLEDKACTQCGTMYAKDGQDIPFE 951

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
             FL      +PD D++F  D +    +Y Q  +G + V +  T G++  K A        
Sbjct: 952  TFLGFKGDKVPDIDLNFSGDYQPRAHKYTQELFGADYVYRAGTIGTVAEKTA-------- 1003

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
               Y  V +                    D R    R A+ S      I     G+ R  
Sbjct: 1004 ---YGYVRKYA------------------DERGMTLRNAEIS-----RIVNGCTGVKRTT 1037

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFD 572
              H  GI++        VP Y ++    P+             T F+   I    L+K D
Sbjct: 1038 GQHPGGIIV--------VPDYMEIEDFCPIQFPADDNESEWRTTHFDFHSIHD-NLLKLD 1088

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTL 618
             LG    T+++     + Q    +D   IP DD +T  +               T  GTL
Sbjct: 1089 ILGHDDPTVIR-----MLQDLTGMDPKTIPLDDKKTMSIFSSTEALGVSPEQIGTNMGTL 1143

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            GI +  +  +RQ LE  +P    +++ +  L         V  NN ++          LI
Sbjct: 1144 GIPEFGTKFVRQMLEDTKPTTFAELVQISGLSH----GTDVWLNNAQD----------LI 1189

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM--GKKIKEEMDKQKERFISGA 736
                 +   VI  ++ +M +  +  G   S A  +  ++  GK + E  D Q+E   +  
Sbjct: 1190 RNGTCKLPDVIGCRDDIM-VYLIYKGLEPSRAFKIMESVRKGKGVPE--DDQEEMRNNNV 1246

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             +  I     +           Y F K+HA AY +++ + A+ K H P+EF A   T+  
Sbjct: 1247 PEWYIQSCQRIK----------YMFPKAHATAYVMMAVRIAYFKVHRPLEFYATYFTVRA 1296

Query: 797  DN----------------VEKIKKFCQDAR----------QFNIQIMPPSVNTPCVD--- 827
            D+                +E+I+    DA+          +  ++++        VD   
Sbjct: 1297 DDFDIPLMVKGSAAIKQKIEEIEGKGHDAQPKEKALLTVLEMALEMIERGFRFVNVDLYK 1356

Query: 828  -----FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                 F +  + +     A+ G+GT  A  I++A     F S ED  SR    ++++ +L
Sbjct: 1357 SDATRFLIEGDSLIAPFNALPGLGTNAAISIVQAREQGEFLSKEDLLSR---SRISKTIL 1413

Query: 883  ESLVFAGAL 891
            E L   GAL
Sbjct: 1414 EFLDEQGAL 1422


>gi|169824428|ref|YP_001692039.1| DNA polymerase III subunit alpha [Finegoldia magna ATCC 29328]
 gi|167831233|dbj|BAG08149.1| DNA polymerase III alpha subunit [Finegoldia magna ATCC 29328]
          Length = 1421

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 144/733 (19%), Positives = 276/733 (37%), Gaps = 167/733 (22%)

Query: 142  EGLIMLTGGSSGPIDRAFF-FNSSQVAEKRL-----------LTFKKLFGDRLYVNLQRH 189
            EGL++ +G  +G + +A   F S +  ++ +           L +  +    +  NL+  
Sbjct: 633  EGLVIGSGNENGELIKAILSFESDEKIDEIISRYDFLEVQPPLYYDGVKSKSMSFNLRSC 692

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                R    ++  L+  H   LVA + + +  +EDY   ++++      +  +K      
Sbjct: 693  EELTR----KLYDLSLKHNKLLVADSYAKYFEKEDYIFRNIILEGQPRKIYGEK-----F 743

Query: 250  PDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            P  + +   EM++ F  L +       ++NT++I+     I  +     P  IE    D 
Sbjct: 744  PTLFFRTTDEMMNEFGFLEKNVAEEIVIDNTIKISEMLEEIKPIPDGTFPPVIEGS--DT 801

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +  E    + +++ G ++             +    RL+ EL+ I    ++  ++I    
Sbjct: 802  ELREMTYKKARSIYGDDL------------PEIVESRLERELSSIISNGYAVLYIIAQKL 849

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------------------- 398
            ++ + ++   VG  RGS   S  A    IT+++PL                         
Sbjct: 850  VKKSNEDGYLVG-SRGSVGSSFVATMADITEVNPLIPHYICENCKHSEFIHDENIGSGVD 908

Query: 399  ----------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                              ++ FE FL  D    PD D++F  + +  V +Y +  +G  +
Sbjct: 909  LDDKICPVCGKPLKKEGHNIPFEVFLGFDGDKEPDIDLNFAGEYQPTVHKYTEELFGEGK 968

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            V +  T G++  K A   + +  +     V+                             
Sbjct: 969  VFRAGTIGTISDKTAYGYIKKYFEDKNEYVNN---------------------------- 1000

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQ 557
                    +  + + + G+ R +  H  G++I   D+ +    P+     DV SD+  T 
Sbjct: 1001 ------SEIKYLQRGILGVKRTSGQHPGGVMIVPRDKDIEDFCPVQHPADDVNSDIITTH 1054

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK-- 615
            FN K I    ++K D LG    T+++   D        VD   IP DD ET  + ++   
Sbjct: 1055 FNYKSI-SGRILKLDLLGHDVPTIIKMLSDMTG-----VDPLTIPMDDKETMSIFSSIDA 1108

Query: 616  ------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
                        GTLGI +  ++ +R  L    P    +++ +  L         V  NN
Sbjct: 1109 LHFEELIDGLDIGTLGIPEFGTNFVRGMLRDTTPKTFSELVRISGLSHGTN----VWLNN 1164

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             ++          LI   + E +  I  ++ +M I  +  G        L +    KI E
Sbjct: 1165 AQD----------LIRDGVVELKDTICTRDDIM-IYLINKG--------LEKKKSFKIME 1205

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  +K R +   + N + +    + +    K  +Y F K+HA AY ++SY+ A+ K HY
Sbjct: 1206 TV--RKNRVLDDDTLNYMIQNGVPDWYIESCKTIEYLFPKAHAVAYVMMSYRIAYFKVHY 1263

Query: 784  PVEFLAASMTLEM 796
            P  F +   T+++
Sbjct: 1264 PEAFYSTFFTIKL 1276


>gi|118443832|ref|YP_878213.1| DNA polymerase III PolC [Clostridium novyi NT]
 gi|118134288|gb|ABK61332.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            novyi NT]
          Length = 1444

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 190/939 (20%), Positives = 344/939 (36%), Gaps = 220/939 (23%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            +++I   D+L     G      +P+  +++L     G + L +L+S    LD   +  R+
Sbjct: 595  EMNITYLDDLNNKFLGNIDVKKLPTYHLIILAKNQVGLKNLYKLIS-FSNLDYFYKKPRM 653

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVN 185
              S +++   EGLI+ +   +G + +A     S    K ++ F      + +  +   + 
Sbjct: 654  PKSLIEQY-KEGLIIGSACEAGEVYKAVLEGKSNEDLKEIIKFYDYLEIQPIMNNEFMLR 712

Query: 186  LQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQ 242
                +  D+ +E   ++ +L   + +P+VAT +  FL  +D +  ++LMA    S   +Q
Sbjct: 713  KGIVKNQDQLKEINRKIYELGINNNMPVVATGDVHFLDPKDGKFREILMAGQGFSDAENQ 772

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFI 296
                   P  YLK  +EM+  F  L E       + N  +IA    F+  +     P  I
Sbjct: 773  -------PPLYLKTTNEMLKEFEYLGEDIAKEVVINNPQKIANAVEFVKPIPDETFPPKI 825

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            +   +DI+    N    KA +     +    + K  H      RL+ ELN I    ++  
Sbjct: 826  DGAEEDIR----NMTLEKAYS-----IYGNPLPKVVH-----DRLEKELNSIINNGYAVL 871

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------------ 398
            +LI    +  + ++   VG  RGS   S+ A    IT+++ L                  
Sbjct: 872  YLIAHKLVAKSLEDGYLVG-SRGSVGSSLVATMSDITEVNGLPPHYVCPNCKNSEFFTDG 930

Query: 399  -----------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                      + FE FL  +    PD D++F  D + ++ +Y +
Sbjct: 931  SVSSGADLPPKKCPKCGADYNRDGHDIPFETFLGFNGDKEPDIDLNFSGDNQGDIHKYTE 990

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G     +  T G++  K A   V + L                D  + V  QA    
Sbjct: 991  VLFGKGHTFKAGTIGTIADKTAYGFVKKYL----------------DEKNMVVSQA---- 1030

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVR 550
                        ++RL   +Q   G+ R +  H  GI++   D  +    P+     D  
Sbjct: 1031 -----------EIERL---TQGCTGVKRTSGQHPGGIMVVPSDNEIYNFCPIQHPADDAN 1076

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
            SD+  T F+   I    L+K D LG    T+L+   D      +K     IP  D +   
Sbjct: 1077 SDIITTHFDYHSIS-GRLLKLDILGHDDPTVLRMLKDITGLDPIK-----IPIGDEKVLS 1130

Query: 611  LLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            L T+               G  GI +  +  +RQ L   +P    D++ +  L       
Sbjct: 1131 LFTSPEALGVTAEELECPVGCYGIPEFGTKFVRQMLVDTKPKTFSDLVRISGLSHG---T 1187

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            ++ + N +   KE   ++           +  I  ++ +M +  L  G    +A  +   
Sbjct: 1188 DVWLNNAQYFIKEGYTTL-----------KDCIATRDDIM-VYLLHKGLPPKDAFTIMEK 1235

Query: 717  M--GKKIKEEMD------KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            +  GK + EE +      K  + +I    K                    Y F K HA A
Sbjct: 1236 VRKGKGLSEEHEALMREHKVPDWYIESCKK------------------IKYMFPKGHAVA 1277

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTL--------------------EMDNVEKIK----- 803
            Y +++ + A+ K +YP  + A   T+                    +MD +  +      
Sbjct: 1278 YVMMAVRIAYYKVYYPEAYYATYFTVRGIDDFDADLIVKGEEVIKRKMDEINALGNSATQ 1337

Query: 804  ---------KFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
                     +   +  + NI+ +   +  +    F +  N I   + ++ GVG   A+ I
Sbjct: 1338 KDKGLLTNLELAFEMYKRNIKFLKVDIYKSHPTKFLIEGNYIRLPIGSLSGVGLNAAKSI 1397

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             +A     F S ED   R    K+++ V+E+L   G L+
Sbjct: 1398 ADAREGGEFISKEDLRKR---SKVSKTVIEALSEHGCLE 1433


>gi|257419836|ref|ZP_05596830.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|257161664|gb|EEU91624.1| DNA polymerase III [Enterococcus faecalis T11]
          Length = 1439

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 178/912 (19%), Positives = 335/912 (36%), Gaps = 215/912 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 608  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 665

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 666  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 725

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 726  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDI 781

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 782  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 838

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 839  ---------------VEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSV 882

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 883  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 942

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 943  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 999

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1000 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1028

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1029 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1079

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        ++   IP DD E   +               +
Sbjct: 1080 ILKLDILGHDDPTVIRMLQDLSG-----IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYS 1134

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1135 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1187

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1188 GEANLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNKIPDEL---RDTYL 1240

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1241 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1295

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1296 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1355

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1356 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1412

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1413 TLIEYMNENGVL 1424


>gi|257090543|ref|ZP_05584904.1| DNA polymerase III polC [Enterococcus faecalis CH188]
 gi|256999355|gb|EEU85875.1| DNA polymerase III polC [Enterococcus faecalis CH188]
          Length = 1439

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 178/912 (19%), Positives = 335/912 (36%), Gaps = 215/912 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 608  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 665

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 666  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 725

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 726  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDV 781

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 782  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 838

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 839  ---------------VEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSV 882

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 883  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 942

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 943  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 999

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1000 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1028

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1029 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1079

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        ++   IP DD E   +               +
Sbjct: 1080 ILKLDILGHDDPTVIRMLQDLSG-----IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYS 1134

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1135 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1187

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1188 GEANLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNKIPDEL---RDTYL 1240

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1241 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1295

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1296 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1355

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1356 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1412

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1413 TLIEYMNENGVL 1424


>gi|256956660|ref|ZP_05560831.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|256947156|gb|EEU63788.1| DNA polymerase III [Enterococcus faecalis DS5]
          Length = 1439

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 178/912 (19%), Positives = 335/912 (36%), Gaps = 215/912 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 608  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 665

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 666  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 725

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 726  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDV 781

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 782  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 838

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 839  ---------------VEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSV 882

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 883  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 942

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 943  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 999

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1000 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1028

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1029 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1079

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        ++   IP DD E   +               +
Sbjct: 1080 ILKLDILGHDDPTVIRMLQDLSG-----IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYS 1134

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1135 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1187

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1188 GEANLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNKIPDEL---RDTYL 1240

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1241 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1295

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1296 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1355

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1356 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1412

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1413 TLIEYMNENGVL 1424


>gi|256763072|ref|ZP_05503652.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256963554|ref|ZP_05567725.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|256684323|gb|EEU24018.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256954050|gb|EEU70682.1| DNA polymerase III [Enterococcus faecalis HIP11704]
          Length = 1439

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 178/912 (19%), Positives = 335/912 (36%), Gaps = 215/912 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 608  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 665

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 666  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 725

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 726  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDV 781

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 782  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 838

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 839  ---------------VEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSV 882

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 883  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 942

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 943  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 999

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1000 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1028

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1029 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1079

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        ++   IP DD E   +               +
Sbjct: 1080 ILKLDILGHDDPTVIRMLQDLSG-----IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYS 1134

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1135 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1187

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1188 GEANLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNKIPDEL---RDTYL 1240

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1241 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1295

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1296 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1355

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1356 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1412

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1413 TLIEYMNENGVL 1424


>gi|256617164|ref|ZP_05474010.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|256596691|gb|EEU15867.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
          Length = 1440

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 181/927 (19%), Positives = 341/927 (36%), Gaps = 216/927 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 609  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 666

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 667  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 726

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 727  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDV 782

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 783  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 839

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 840  ---------------VEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSV 883

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 884  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 943

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 944  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 1000

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1001 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1029

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1030 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1080

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        ++   IP DD E   +               +
Sbjct: 1081 ILKLDILGHDDPTVIRMLQDLSG-----IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYS 1135

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1136 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1188

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1189 GEANLAEVIGCRDDIMVY----LIHAGLDSGLAFKIMETVRKGQWNKIPDEL---RDTYL 1241

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1242 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1296

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1297 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1356

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1357 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1413

Query: 880  RVLESLVFAGAL-DCFGYSRMQLLQSL 905
             ++E +   G L D    +++ L   L
Sbjct: 1414 TLIEYMNENGVLKDLLDENQLSLFDML 1440


>gi|257087409|ref|ZP_05581770.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|256995439|gb|EEU82741.1| DNA polymerase III [Enterococcus faecalis D6]
          Length = 1439

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 178/912 (19%), Positives = 335/912 (36%), Gaps = 215/912 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 608  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 665

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 666  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 725

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 726  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDV 781

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 782  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 838

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 839  ---------------VEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSV 882

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 883  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 942

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 943  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 999

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1000 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1028

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1029 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1079

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        ++   IP DD E   +               +
Sbjct: 1080 ILKLDILGHDDPTVIRMLQDLSG-----IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYS 1134

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1135 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1187

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1188 GEANLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNKIPDEL---RDTYL 1240

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1241 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1295

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1296 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1355

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1356 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1412

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1413 TLIEYMNENGVL 1424


>gi|255972152|ref|ZP_05422738.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|257079586|ref|ZP_05573947.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|257082034|ref|ZP_05576395.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|257084659|ref|ZP_05579020.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|257416589|ref|ZP_05593583.1| DNA polymerase III [Enterococcus faecalis AR01/DG]
 gi|255963170|gb|EET95646.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|256987616|gb|EEU74918.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|256990064|gb|EEU77366.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|256992689|gb|EEU79991.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|257158417|gb|EEU88377.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
          Length = 1439

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 178/912 (19%), Positives = 335/912 (36%), Gaps = 215/912 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 608  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 665

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 666  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 725

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 726  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDV 781

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 782  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 838

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 839  ---------------VEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSV 882

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 883  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 942

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 943  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 999

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1000 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1028

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1029 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1079

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        ++   IP DD E   +               +
Sbjct: 1080 ILKLDILGHDDPTVIRMLQDLSG-----IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYS 1134

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1135 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1187

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1188 GEANLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNKIPDEL---RDTYL 1240

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1241 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1295

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1296 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1355

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1356 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1412

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1413 TLIEYMNENGVL 1424


>gi|307271493|ref|ZP_07552765.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
 gi|306511765|gb|EFM80763.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
          Length = 1451

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 178/912 (19%), Positives = 335/912 (36%), Gaps = 215/912 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 620  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 677

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 678  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 737

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 738  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDV 793

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 794  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 850

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 851  ---------------VEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSV 894

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 895  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 954

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 955  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 1011

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1012 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1040

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1041 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1091

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        ++   IP DD E   +               +
Sbjct: 1092 ILKLDILGHDDPTVIRMLQDLSG-----IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYS 1146

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1147 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1199

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1200 GEANLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNKIPDEL---RDTYL 1252

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1253 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1307

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1308 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1367

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1368 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1424

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1425 TLIEYMNENGVL 1436


>gi|229545206|ref|ZP_04433931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
 gi|300860665|ref|ZP_07106752.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis TUSoD Ef11]
 gi|229309751|gb|EEN75738.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
 gi|300849704|gb|EFK77454.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis TUSoD Ef11]
 gi|315035641|gb|EFT47573.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0027]
          Length = 1451

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 178/912 (19%), Positives = 335/912 (36%), Gaps = 215/912 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 620  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 677

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 678  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 737

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 738  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDV 793

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 794  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 850

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 851  ---------------VEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSV 894

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 895  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 954

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 955  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 1011

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1012 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1040

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1041 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1091

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        ++   IP DD E   +               +
Sbjct: 1092 ILKLDILGHDDPTVIRMLQDLSG-----IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYS 1146

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1147 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1199

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1200 GEANLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNKIPDEL---RDTYL 1252

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1253 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1307

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1308 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1367

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1368 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1424

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1425 TLIEYMNENGVL 1436


>gi|315170319|gb|EFU14336.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1342]
          Length = 1451

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 178/912 (19%), Positives = 335/912 (36%), Gaps = 215/912 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 620  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 677

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 678  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 737

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 738  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDV 793

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 794  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 850

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 851  ---------------VEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSV 894

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 895  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 954

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 955  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 1011

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1012 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1040

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1041 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1091

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        ++   IP DD E   +               +
Sbjct: 1092 ILKLDILGHDDPTVIRMLQDLSG-----IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYS 1146

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1147 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1199

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1200 GEANLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNKIPDEL---RDTYL 1252

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1253 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1307

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1308 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1367

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1368 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1424

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1425 TLIEYMNENGVL 1436


>gi|312903703|ref|ZP_07762877.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
 gi|310632895|gb|EFQ16178.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
 gi|315578694|gb|EFU90885.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0630]
          Length = 1451

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 178/912 (19%), Positives = 335/912 (36%), Gaps = 215/912 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 620  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 677

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 678  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 737

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 738  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDV 793

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 794  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 850

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 851  ---------------VEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSV 894

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 895  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 954

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 955  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 1011

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1012 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1040

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1041 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1091

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        ++   IP DD E   +               +
Sbjct: 1092 ILKLDILGHDDPTVIRMLQDLSG-----IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYS 1146

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1147 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1199

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1200 GEANLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNKIPDEL---RDTYL 1252

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1253 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1307

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1308 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1367

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1368 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1424

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1425 TLIEYMNENGVL 1436


>gi|29376875|ref|NP_816029.1| DNA polymerase III PolC [Enterococcus faecalis V583]
 gi|227519898|ref|ZP_03949947.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227553915|ref|ZP_03983962.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
 gi|29344340|gb|AAO82099.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis V583]
 gi|227072692|gb|EEI10655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227176901|gb|EEI57873.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
 gi|315574385|gb|EFU86576.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309B]
 gi|315580141|gb|EFU92332.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309A]
          Length = 1451

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 178/912 (19%), Positives = 335/912 (36%), Gaps = 215/912 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 620  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 677

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 678  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 737

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 738  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDI 793

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 794  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 850

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 851  ---------------VEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSV 894

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 895  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 954

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 955  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 1011

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1012 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1040

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1041 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1091

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        ++   IP DD E   +               +
Sbjct: 1092 ILKLDILGHDDPTVIRMLQDLSG-----IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYS 1146

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1147 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1199

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1200 GEANLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNKIPDEL---RDTYL 1252

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1253 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1307

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1308 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1367

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1368 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1424

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1425 TLIEYMNENGVL 1436


>gi|256961318|ref|ZP_05565489.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|256951814|gb|EEU68446.1| DNA polymerase III [Enterococcus faecalis Merz96]
          Length = 1439

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 178/912 (19%), Positives = 335/912 (36%), Gaps = 215/912 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 608  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 665

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 666  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 725

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 726  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDV 781

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 782  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 838

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 839  ---------------VEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSV 882

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 883  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 942

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 943  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 999

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1000 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1028

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1029 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1079

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        ++   IP DD E   +               +
Sbjct: 1080 ILKLDILGHDDPTVIRMLQDLSG-----IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYS 1134

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1135 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1187

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1188 GEANLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNKIPDEL---RDTYL 1240

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1241 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1295

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1296 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1355

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1356 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1412

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1413 TLIEYMNENGVL 1424


>gi|229549448|ref|ZP_04438173.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|256853720|ref|ZP_05559085.1| DNA polymerase III PolC [Enterococcus faecalis T8]
 gi|257421977|ref|ZP_05598967.1| DNA polymerase III polC [Enterococcus faecalis X98]
 gi|294779462|ref|ZP_06744860.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis PC1.1]
 gi|307270863|ref|ZP_07552150.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
 gi|307277206|ref|ZP_07558310.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
 gi|307291051|ref|ZP_07570937.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
 gi|312953417|ref|ZP_07772257.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
 gi|229305685|gb|EEN71681.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|256710663|gb|EEU25706.1| DNA polymerase III PolC [Enterococcus faecalis T8]
 gi|257163801|gb|EEU93761.1| DNA polymerase III polC [Enterococcus faecalis X98]
 gi|294453468|gb|EFG21872.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis PC1.1]
 gi|306497900|gb|EFM67431.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
 gi|306506136|gb|EFM75302.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
 gi|306512776|gb|EFM81421.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
 gi|310628626|gb|EFQ11909.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
 gi|315030983|gb|EFT42915.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4000]
 gi|315146013|gb|EFT90029.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2141]
 gi|315146659|gb|EFT90675.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4244]
 gi|315152085|gb|EFT96101.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0031]
 gi|315155311|gb|EFT99327.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0043]
 gi|315159111|gb|EFU03128.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0312]
 gi|315161731|gb|EFU05748.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0645]
 gi|315166431|gb|EFU10448.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1341]
 gi|315173645|gb|EFU17662.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1346]
 gi|323481337|gb|ADX80776.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis 62]
 gi|327535664|gb|AEA94498.1| DNA polymerase III PolC [Enterococcus faecalis OG1RF]
 gi|329569948|gb|EGG51703.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1467]
          Length = 1451

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 178/912 (19%), Positives = 335/912 (36%), Gaps = 215/912 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 620  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 677

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 678  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 737

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 738  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDV 793

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 794  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 850

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 851  ---------------VEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSV 894

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 895  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 954

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 955  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 1011

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1012 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1040

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1041 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1091

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        ++   IP DD E   +               +
Sbjct: 1092 ILKLDILGHDDPTVIRMLQDLSG-----IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYS 1146

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1147 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1199

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1200 GEANLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNKIPDEL---RDTYL 1252

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1253 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1307

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1308 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1367

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1368 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1424

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1425 TLIEYMNENGVL 1436


>gi|302380708|ref|ZP_07269173.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
            magna ACS-171-V-Col3]
 gi|302311651|gb|EFK93667.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
            magna ACS-171-V-Col3]
          Length = 1421

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 144/733 (19%), Positives = 276/733 (37%), Gaps = 167/733 (22%)

Query: 142  EGLIMLTGGSSGPIDRAFF-FNSSQVAEKRL-----------LTFKKLFGDRLYVNLQRH 189
            EGL++ +G  +G + +A   F S +  ++ +           L +  +    +  NL+  
Sbjct: 633  EGLVIGSGNENGELIKAILSFESDEKIDEIISRYDFLEVQPPLYYDGVKSKSMSFNLRSC 692

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                R    ++  L+  H   LVA + + +  +EDY   ++++      +  +K      
Sbjct: 693  EELTR----KLYNLSLKHNKLLVADSYAKYFEKEDYIFRNIILEGQPRKIYGEK-----F 743

Query: 250  PDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            P  + +   EM++ F  L +       ++NT++I+     I  +     P  IE    D 
Sbjct: 744  PTLFFRTTDEMMNEFVFLEKNVAEEIVIDNTIKISEMFEEIKPIPDGTFPPVIEGS--DT 801

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +  E    + +++ G ++             +    RL+ EL+ I    ++  ++I    
Sbjct: 802  ELREMTYKKARSIYGDDL------------PEIVESRLERELSSIISNGYAVLYIIAQKL 849

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------------------- 398
            ++ + ++   VG  RGS   S  A    IT+++PL                         
Sbjct: 850  VKKSNEDGYLVG-SRGSVGSSFVATMADITEVNPLIPHYICENCKHSEFIHDENIGSGVD 908

Query: 399  ----------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                              ++ FE FL  D    PD D++F  + +  V +Y +  +G  +
Sbjct: 909  LDDKICPECGKPLKKEGHNIPFEVFLGFDGDKEPDIDLNFAGEYQPTVHKYTEELFGEGK 968

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            V +  T G++  K A   + +  +     V+                             
Sbjct: 969  VFRAGTIGTISDKTAYGYIKKYFEDKNEYVNN---------------------------- 1000

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQ 557
                    +  + + + G+ R +  H  G++I   D+ +    P+     DV SD+  T 
Sbjct: 1001 ------SEIKYLQRGILGVKRTSGQHPGGVMIVPRDKDIEDFCPVQHPADDVNSDIITTH 1054

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK-- 615
            FN K I    ++K D LG    T+++   D        VD   IP DD ET  + ++   
Sbjct: 1055 FNYKSI-SGRILKLDLLGHDVPTIIKMLSDMTG-----VDPLTIPMDDKETMSIFSSIDA 1108

Query: 616  ------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
                        GTLGI +  ++ +R  L    P    +++ +  L         V  NN
Sbjct: 1109 LHFEELIDGLDIGTLGIPEFGTNFVRGMLRDTTPKTFSELVRISGLSHGTN----VWLNN 1164

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             ++          LI   + E +  I  ++ +M I  +  G        L +    KI E
Sbjct: 1165 AQD----------LIRDGVVELKDTICTRDDIM-IYLINKG--------LEKKKSFKIME 1205

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  +K R +   + N + +    + +    K  +Y F K+HA AY ++SY+ A+ K HY
Sbjct: 1206 TV--RKNRVLDDDTLNYMIQNGVPDWYIESCKTIEYLFPKAHAVAYVMMSYRIAYFKVHY 1263

Query: 784  PVEFLAASMTLEM 796
            P  F +   T+++
Sbjct: 1264 PEAFYSTFFTIKL 1276


>gi|293383603|ref|ZP_06629513.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|293387284|ref|ZP_06631841.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|312906153|ref|ZP_07765165.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
 gi|312909498|ref|ZP_07768353.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis DAPTO 516]
 gi|291079115|gb|EFE16479.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|291083321|gb|EFE20284.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|310627799|gb|EFQ11082.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
 gi|311290171|gb|EFQ68727.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis DAPTO 516]
          Length = 1451

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 178/912 (19%), Positives = 335/912 (36%), Gaps = 215/912 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 620  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 677

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 678  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 737

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 738  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDV 793

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 794  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 850

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 851  ---------------VEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSV 894

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 895  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 954

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 955  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 1011

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1012 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1040

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1041 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1091

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        ++   IP DD E   +               +
Sbjct: 1092 ILKLDILGHDDPTVIRMLQDLSG-----IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYS 1146

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1147 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1199

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1200 GEANLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNKIPDEL---RDTYL 1252

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1253 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1307

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1308 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1367

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1368 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1424

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1425 TLIEYMNENGVL 1436


>gi|325685948|gb|EGD28011.1| DNA polymerase III PolC [Lactobacillus delbrueckii subsp. lactis DSM
            20072]
          Length = 1402

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 173/800 (21%), Positives = 300/800 (37%), Gaps = 204/800 (25%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT+++ ++ + +    DVL+A          +R +  PD +     EM+  FS + E
Sbjct: 692  PVVATSDAHYIDKHEAIYRDVLLAAQRGN----PNRNKQHPDLHFYTTQEMLDEFSFMGE 747

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
             +   V I+              P  I    D+  +  ++E     +     R+ +    
Sbjct: 748  DIAKEVVISN-------------PNKINAMIDEGVQPVQDESFPPKIPHTAERVRKLTYD 794

Query: 330  KGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
            K +         + + RLD EL+ I    +   +LI    +  + K+   VG  RGS   
Sbjct: 795  KAHELYGDPLPDNIQARLDRELDAIIGNGYGVVYLISQMLVAKSVKDGYLVG-SRGSVGS 853

Query: 384  SVTAYALTITDIDPL------------RF-----------------------------SL 402
            S+ A  + IT+I+P+             F                             ++
Sbjct: 854  SLVATMMGITEINPMPPHYRCPKCKQSEFFENGEYASGFDLPDKKCPDCQVMMVKDGQNI 913

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL      +PD D++F  D +     +++  +G     +  T G+L  K A   +G
Sbjct: 914  PFETFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPNHSFKAGTVGTLADKKA---IG 970

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             A                    HP             E ++ +  VDRL   +  + G+ 
Sbjct: 971  YAKHY--------------QDEHP-------------EIKMNNAEVDRL---AIGVTGVK 1000

Query: 523  RHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
                 H AGIV+   D+ + +L P+     D+  +   T F+   I    L+KFD LG +
Sbjct: 1001 ATTGQHPAGIVVLPDDKDIYELTPLQYPSDDISKEWKTTHFDFHQIHD-NLLKFDILGHQ 1059

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQL 623
              T+++   D        +D   IP DD +   L ++               GTLG+ + 
Sbjct: 1060 DPTMIRMLQDLSG-----IDPLTIPTDDPKVMSLFSSPEALGVTPEQINSKTGTLGLPEF 1114

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLI 678
             +  +R  LE  +P    +++ +  L        G  + ++      NG  K+ S+    
Sbjct: 1115 GTPFVRGMLEETKPSTFAELLQISGLSHGTDVWLGNAEELI-----NNGTCKLKSVIGCR 1169

Query: 679  DPMLKET--QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE-MDKQKERFISG 735
            D ++ +    GV   +E+V          + S  + +R+  GK I +E M   KE     
Sbjct: 1170 DNIMTDLIRWGV---KEEV----------AFSTMETVRK--GKGISDENMAVLKE----- 1209

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                  +K I         K   Y F K+HAAAY +++ + AW K +YP  + AA  ++ 
Sbjct: 1210 ------NKNIPDWYIPSCLKIK-YMFPKAHAAAYILMALRVAWFKVYYPEIYYAAYFSVR 1262

Query: 796  MDNVE--------------------------KIKKFCQDARQFNIQIMPPSVNTPCVD-- 827
             D V+                          K++K  Q   +   + +   +N   VD  
Sbjct: 1263 ADKVDLEAMSRGKNTVVALINRIKEKGTAATKLEKDLQTYMELVNEAIERGINFKMVDIN 1322

Query: 828  ------FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD-SKKL-- 877
                  +K+ D + I     A+ G+G + A+ I+ A ++ PF S ED   R   S+K+  
Sbjct: 1323 ESEATTYKIVDKHTILAPFNAVDGLGDSAAKQIVAARSEAPFLSKEDLQVRGKVSQKIMD 1382

Query: 878  ---NRRVLESLVFAGALDCF 894
               N  VLE +     L  F
Sbjct: 1383 FFENNNVLEGMPDQNQLSLF 1402


>gi|312899805|ref|ZP_07759124.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
 gi|311293055|gb|EFQ71611.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
          Length = 1451

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 178/912 (19%), Positives = 335/912 (36%), Gaps = 215/912 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 620  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 677

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 678  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 737

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 738  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDV 793

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 794  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 850

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 851  ---------------VEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSV 894

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 895  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 954

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 955  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 1011

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1012 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1040

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1041 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1091

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        ++   IP DD E   +               +
Sbjct: 1092 ILKLDILGHDDPTVIRMLQDLSG-----IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYS 1146

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1147 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1199

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1200 GEANLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNKIPDEL---RDTYL 1252

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1253 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1307

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1308 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1367

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1368 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1424

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1425 TLIEYMNENGVL 1436


>gi|303233818|ref|ZP_07320472.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
            magna BVS033A4]
 gi|302495252|gb|EFL55004.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
            magna BVS033A4]
          Length = 1421

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 144/733 (19%), Positives = 276/733 (37%), Gaps = 167/733 (22%)

Query: 142  EGLIMLTGGSSGPIDRAFF-FNSSQVAEKRL-----------LTFKKLFGDRLYVNLQRH 189
            EGL++ +G  +G + +A   F S +  ++ +           L +  +    +  NL+  
Sbjct: 633  EGLVIGSGNENGELIKAILSFESDEKIDEIISRYDFLEVQPPLYYDGVKSKSMSFNLRSC 692

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                R    ++  L+  H   LVA + + +  +EDY   ++++      +  +K      
Sbjct: 693  EELTR----KLYNLSLKHNKLLVADSYAKYFEKEDYIFRNIILEGQPRKIYGEK-----F 743

Query: 250  PDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            P  + +   EM++ F  L +       ++NT++I+     I  +     P  IE    D 
Sbjct: 744  PTLFFRTTDEMMNEFVFLEKNVAEEIVIDNTIKISEMLEEIKPIPDGTFPPVIEGS--DT 801

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +  E    + +++ G ++             +    RL+ EL+ I    ++  ++I    
Sbjct: 802  ELREMTYKKARSIYGDDL------------PEIVESRLERELSSIISNGYAVLYIIAQKL 849

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------------------- 398
            ++ + ++   VG  RGS   S  A    IT+++PL                         
Sbjct: 850  VKKSNEDGYLVG-SRGSVGSSFVATMADITEVNPLIPHYICENCKHSEFIHDENIGSGVD 908

Query: 399  ----------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                              ++ FE FL  D    PD D++F  + +  V +Y +  +G  +
Sbjct: 909  LDDKICPECGKPLKKEGHNIPFEVFLGFDGDKEPDIDLNFAGEYQPTVHKYTEELFGEGK 968

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            V +  T G++  K A   + +  +     V+                             
Sbjct: 969  VFRAGTIGTISDKTAYGYIKKYFEDKNEYVNN---------------------------- 1000

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQ 557
                    +  + + + G+ R +  H  G++I   D+ +    P+     DV SD+  T 
Sbjct: 1001 ------SEIKYLQRGILGVKRTSGQHPGGVMIVPRDKDIEDFCPVQHPADDVNSDIITTH 1054

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK-- 615
            FN K I    ++K D LG    T+++   D        VD   IP DD ET  + ++   
Sbjct: 1055 FNYKSI-SGRILKLDLLGHDVPTIIKMLSDMTG-----VDPLTIPMDDKETMSIFSSIDA 1108

Query: 616  ------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
                        GTLGI +  ++ +R  L    P    +++ +  L         V  NN
Sbjct: 1109 LHFEELIDGLDIGTLGIPEFGTNFVRGMLRDTTPKTFSELVRISGLSHGTN----VWLNN 1164

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             ++          LI   + E +  I  ++ +M I  +  G        L +    KI E
Sbjct: 1165 AQD----------LIRDGVVELKDTICTRDDIM-IYLINKG--------LEKKKSFKIME 1205

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  +K R +   + N + +    + +    K  +Y F K+HA AY ++SY+ A+ K HY
Sbjct: 1206 TV--RKNRVLDDDTLNYMIQNGVPDWYIESCKTIEYLFPKAHAVAYVMMSYRIAYFKVHY 1263

Query: 784  PVEFLAASMTLEM 796
            P  F +   T+++
Sbjct: 1264 PEAFYSTFFTIKL 1276


>gi|237739760|ref|ZP_04570241.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
 gi|229423368|gb|EEO38415.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
          Length = 1449

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 192/921 (20%), Positives = 346/921 (37%), Gaps = 215/921 (23%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
            ++ +I++ V T EG + + +LVS  ++   G +  RI  S L+E   EGLI+   GSS  
Sbjct: 608  SLKNIMVQVKTQEGLKNMYKLVSEGHIKYFGNKKARIPKSVLKE-NREGLIV---GSSLS 663

Query: 155  IDRAFFFNSSQVAE-------------KRLLTFKKLFGDRLYVNLQRHRG------YDRY 195
               A F NS ++ E              +   + +L     Y  L    G      YD  
Sbjct: 664  ---AHFMNSGELVELYLRHDLEKLEETAKFYDYIELLPKSTYNELIEKEGTGSLASYDEV 720

Query: 196  RESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
             +       L     + + A++N  +L E +     +L+     TV S + + RV    Y
Sbjct: 721  EKMNKYFYDLGKRLGILVTASSNVHYLDENEDIIRSILL-YGSGTVYSPR-QYRVNNGFY 778

Query: 254  LKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   EM+  FS L E       + NT +IA     + +   PI   F   + D+ ++  
Sbjct: 779  FRTTDEMLKEFSYLGEQEAKEVVITNTNKIA---DMVEEGIKPIPEGFYPPKMDNAEEIV 835

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
                  KA      R+    +     A     RL+ ELN I    FS  +L     ++ +
Sbjct: 836  RTMTYEKAY-----RIYGDPLPNIVSA-----RLERELNAIINNGFSVLYLSAQKLVKKS 885

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDID------------------------------- 396
              N   VG  RGS   S+ A+ + IT+++                               
Sbjct: 886  LDNGYLVG-SRGSVGSSLVAFMMGITEVNALYPHYICDNPECKHSEFIEKEGVGIDLPDK 944

Query: 397  -------PLR---FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                   PLR   +S+ FE F+      +PD D++F  + + E+ RY +  +G E V + 
Sbjct: 945  ICPNCGAPLRKDGYSIPFEVFMGFKGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKA 1004

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T  +L  K A   V +  +                            D+     R    
Sbjct: 1005 GTISTLAEKNAEAYVRKYFE----------------------------DNNLNAVRAEII 1036

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMK 561
             + RL + ++K  G       H  G+VI      + +  P+ R   D  S+   T ++  
Sbjct: 1037 RLGRLCQGAKKTTG------QHPGGMVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYH 1090

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK------ 615
             +++  L+K D LG    T ++     L Q    +++  IP  D +T  + ++       
Sbjct: 1091 VMDEQ-LVKLDILGHDDPTTIK-----LLQEYTNMEIKDIPLADKDTLKIFSSTESLGVS 1144

Query: 616  --------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR--- 664
                    GT GI +  +  +RQ L   +P    +++ +  L       N+ + N +   
Sbjct: 1145 PEEIGTEIGTYGIPEFGTGFVRQMLIDTRPTTFAELVRISGLSHG---TNVWLNNAQEFV 1201

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +NG+  +  I  + D ++       +      +I +            +R+   KK  E 
Sbjct: 1202 RNGQATLSQIITVRDDIMNYLIDQGLDNSDAFKIMEF-----------VRKGKPKKEPEN 1250

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
             +            N + +    + +    +  +Y F K HA AY +++ + A+ K H P
Sbjct: 1251 WENY---------SNMMKEKNVPDWYIESCRRIEYMFPKGHAVAYVMMAMRIAYFKVHKP 1301

Query: 785  VEFLAASMTLEMDN---------------VEKIKK-------------FCQ-----DARQ 811
            + F AA ++ + D+               +E++ K              C+     +AR 
Sbjct: 1302 LAFYAAFLSRKADDFDMEVMSKGVLAKQKLEELSKEPKLDPKKKNEQAICEIVVELEAR- 1360

Query: 812  FNIQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
              I+++P  +  +    FK+ D +I   L  I G+G     +I++   +  F S+ED   
Sbjct: 1361 -GIELLPVDIYLSEGRKFKIEDGKIRIPLIGISGLGGAVIENILKEREEAKFISVEDLKR 1419

Query: 871  RVDSKKLNRRVLESLVFAGAL 891
            R    K+++ V + L   GA+
Sbjct: 1420 RT---KMSQTVADKLKSIGAI 1437


>gi|315150171|gb|EFT94187.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0012]
          Length = 1451

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 178/912 (19%), Positives = 335/912 (36%), Gaps = 215/912 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 620  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 677

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 678  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 737

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 738  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDV 793

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 794  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 850

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 851  ---------------VEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSV 894

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 895  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 954

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 955  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 1011

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1012 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1040

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1041 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1091

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        ++   IP DD E   +               +
Sbjct: 1092 ILKLDILGHDDPTVIRMLQDLSG-----IEPKTIPTDDPEVMRIFEGPEVLGVDAEQIYS 1146

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1147 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1199

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1200 GEANLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNKIPDEL---RDTYL 1252

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1253 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1307

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1308 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1367

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1368 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1424

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1425 TLIEYMNENGVL 1436


>gi|295396947|ref|ZP_06807069.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
 gi|294974800|gb|EFG50505.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
          Length = 1439

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 169/793 (21%), Positives = 289/793 (36%), Gaps = 204/793 (25%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT +  +L+EED    ++L+    S      +R +  P+ + ++  EM+  F+ L E
Sbjct: 732  PVVATGDVHYLNEEDKLYREILINSIKS------NRTKNFPEAHFRSTEEMLQEFAFLGE 785

Query: 270  ------ALENTVEIARRCSFIL----QVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
                   +EN+  IA    F+     +++ P +    E+E  D+  E+ +E+  K +  +
Sbjct: 786  ETAYQIVVENSNAIADSIEFVEPLKDKLYTPTI-EGAEQELTDMSFEKAHEIYGKELPEI 844

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                                RLD EL  I    FS  +LI    ++ +  +   VG  RG
Sbjct: 845  -----------------VEARLDKELKSIISNGFSVIYLISQKLVKKSNDDGYIVG-SRG 886

Query: 380  SGAGSVTAYALTITDIDPL---------RFS----------------------------- 401
            S   S  A    IT+++PL          +S                             
Sbjct: 887  SVGSSFVATMSGITEVNPLAPHYVCPNCHYSHFFTDGSVGSGFDLPDKPCPECGTNLDKD 946

Query: 402  ---LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K A 
Sbjct: 947  GQDIPFETFLGFKGDKVPDIDLNFSGEYQARAHAYTKVLFGDDHVFRAGTIGTVADKTAF 1006

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V     + Y Q D+   L                  R  E             +++  
Sbjct: 1007 GYV-----LGYDQ-DKNLNL------------------RKTEKEF----------LAKGA 1032

Query: 519  EGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             G+ R    H  GI++   +  +    P+     DV S+   T F+   I    ++K D 
Sbjct: 1033 TGVKRTTGQHPGGIIVIPENMDVYDFTPIQFPADDVESEWKTTHFDFHSIHD-NVLKLDI 1091

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLG 619
            LG    T+++K  D        +D + IP DD E Y L               +  GTLG
Sbjct: 1092 LGHDDPTMIRKLQDLSG-----IDPTEIPIDDPEVYELFNGTEVLGVTKEQIYSNTGTLG 1146

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI- 678
            I +  +   RQ LE  +P    +++ +  L       ++ + N     +EK + +  +I 
Sbjct: 1147 IPEFGTRFTRQMLEATKPSTFAELLQISGLSHG---TDVWLGNAEVLVREKGLPLSEVIG 1203

Query: 679  ---DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               D M+      +   +    + ++  G  LSE         K I  E D   E ++  
Sbjct: 1204 CRDDIMVYLIHRGLPESDAFQIMEKVRKGKGLSEEH-------KAIMREYD-VPEWYMDS 1255

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              K                    Y F K+HAAAY + + + AW K  +P+ +  A +++ 
Sbjct: 1256 CEK------------------IKYMFPKAHAAAYVLNAMRVAWFKVKHPIWYYCAYLSVR 1297

Query: 796  MDNVEKIK----KFCQDAR--QFNIQIMPPSV---------------------------- 821
              + + +     K    A+  + N + M  S                             
Sbjct: 1298 ASDFDLVSMSNGKESTKAKINEINAKGMEASTKEKQLLTVLEIVNEMWERGFTLKMVDIN 1357

Query: 822  NTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD-SKKLNR 879
             +   +F +  DN +     AI G+GT  A+ I+ A  + PF S ED  +R   SK L  
Sbjct: 1358 KSHATEFIIEDDNTLIAPFRAIDGLGTNVAKSIVAAREESPFLSKEDLQTRGKVSKSLIE 1417

Query: 880  RVLESLVFAGALD 892
             + E+ V  G  D
Sbjct: 1418 YMTENHVLDGLPD 1430


>gi|315025440|gb|EFT37372.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2137]
          Length = 1451

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 178/912 (19%), Positives = 335/912 (36%), Gaps = 215/912 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 620  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 677

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 678  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 737

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 738  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDV 793

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 794  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 850

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 851  ---------------VEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSV 894

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 895  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 954

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 955  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 1011

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1012 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1040

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1041 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1091

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        ++   IP DD E   +               +
Sbjct: 1092 ILKLDILGHDDPTVIRMLQDLSG-----IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYS 1146

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1147 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1199

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1200 GEANLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNKIPDEL---RDTYL 1252

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1253 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1307

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1308 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1367

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1368 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1424

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1425 TLIEYMNENGVL 1436


>gi|307287733|ref|ZP_07567776.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
 gi|306501471|gb|EFM70774.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
 gi|315032873|gb|EFT44805.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0017]
          Length = 1451

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 178/912 (19%), Positives = 335/912 (36%), Gaps = 215/912 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 620  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 677

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 678  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 737

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 738  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDV 793

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 794  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 850

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 851  ---------------VEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSV 894

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 895  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 954

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 955  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 1011

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1012 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1040

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1041 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1091

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        ++   IP DD E   +               +
Sbjct: 1092 ILKLDILGHDDPTVIRMLQDLSG-----IEPKTIPTDDPEVMRIFEGPEVLGVDAEQIYS 1146

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1147 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1199

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1200 GEANLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNKIPDEL---RDTYL 1252

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1253 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1307

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1308 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1367

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1368 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1424

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1425 TLIEYMNENGVL 1436


>gi|300812566|ref|ZP_07092983.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300496439|gb|EFK31544.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 1402

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 171/798 (21%), Positives = 298/798 (37%), Gaps = 200/798 (25%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT+++ ++ + +    DVL+A          +R +  PD +     EM+  FS + E
Sbjct: 692  PVVATSDAHYIDKHEAIYRDVLLAAQRGN----PNRNKQHPDLHFYTTQEMLDEFSFMGE 747

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
             +   V I+              P  I    D+  +  ++E     +     R+      
Sbjct: 748  DIAKEVVISN-------------PNKINAMIDEGVQPVQDESFPPKIPHTAERVRNLTYD 794

Query: 330  KGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
            K +         + + RLD EL+ I    +   +LI    +  + K+   VG  RGS   
Sbjct: 795  KAHELYGDPLPDNIQARLDRELDAIIGNGYGVVYLISQMLVAKSVKDGYLVG-SRGSVGS 853

Query: 384  SVTAYALTITDIDPL------------RF-----------------------------SL 402
            S+ A  + IT+I+P+             F                             ++
Sbjct: 854  SLVATMMGITEINPMPPHYRCPKCKQSEFFENGEYASGFDLPDKKCPDCQVMMVKDGQNI 913

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL      +PD D++F  D +     +++  +G     +  T G+L  K A   +G
Sbjct: 914  PFETFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPNHSFKAGTVGTLADKKA---IG 970

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             A                    HP             E ++ +  VDRL   +  + G+ 
Sbjct: 971  YAKHY--------------QDEHP-------------EIKMNNAEVDRL---AIGVTGVK 1000

Query: 523  RHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
                 H AGIV+   D+ + +L P+     D+  +   T F+   I    L+KFD LG +
Sbjct: 1001 ATTGQHPAGIVVLPDDKDIYELTPLQYPSDDISKEWKTTHFDFHQIHD-NLLKFDILGHQ 1059

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQL 623
              T+++   D        +D   IP DD +   L ++               GTLG+ + 
Sbjct: 1060 DPTMIRMLQDLSG-----IDPLTIPTDDPKVMSLFSSPEALGVTPEQINSKTGTLGLPEF 1114

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLI 678
             +  +R  LE  +P    +++ +  L        G  + ++      NG  K+ S+    
Sbjct: 1115 GTPFVRGMLEETKPSTFAELLQISGLSHGTDVWLGNAEELI-----NNGTCKLKSVIGCR 1169

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE-MDKQKERFISGAS 737
            D ++ +    +I+     ++A        S  + +R+  GK I +E M   KE       
Sbjct: 1170 DNIMTD----LIHWGVKEEVA-------FSTMETVRK--GKGISDENMAVLKE------- 1209

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
                +K I         K   Y F K+HAAAY +++ + AW K +YP  + AA  ++  D
Sbjct: 1210 ----NKNIPDWYIPSCLKIK-YMFPKAHAAAYILMALRVAWFKVYYPEIYYAAYFSVRAD 1264

Query: 798  NVE--------------------------KIKKFCQDARQFNIQIMPPSVNTPCVD---- 827
             V+                          K++K  Q   +   + +   +N   VD    
Sbjct: 1265 KVDLEAMSRGKNTVVALINRIKEKGTAATKLEKDLQTYMELVNEAIERGINFKMVDINES 1324

Query: 828  ----FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD-SKKL---- 877
                +K+ D + I     A+ G+G + A+ I+ A ++ PF S ED   R   S+K+    
Sbjct: 1325 EATTYKIVDKHTILAPFNAVDGLGDSAAKQIVAARSEAPFLSKEDLQVRGKVSQKIMDFF 1384

Query: 878  -NRRVLESLVFAGALDCF 894
             N  VLE +     L  F
Sbjct: 1385 ENNNVLEGMPDQNQLSLF 1402


>gi|315164832|gb|EFU08849.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1302]
          Length = 1451

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 178/912 (19%), Positives = 335/912 (36%), Gaps = 215/912 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L +T  G + L +L+S M  +D   +  RI  S L ++  EGL++ +  S+G I  A 
Sbjct: 620  TILATTQAGLKNLFKLIS-MSNVDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAM 677

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ R   +       K ++   +   L ++        S +V++       +V
Sbjct: 678  MQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVV 737

Query: 213  ATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            AT N  +L+EED     +L+ ++  +  +++   P+V    + +   EM++ F  L +  
Sbjct: 738  ATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKV----HFRTTDEMLTEFQFLGQDV 793

Query: 270  ----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                 +EN  ++A  C  ++ V    + P +P   E+E  D+      EL    +  +  
Sbjct: 794  AKRIVVENPNKVADLCEEVIPVKDDLYTPKIPG-SEQEITDLSYNRARELYGDPLPEI-- 850

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                             +RL+ ELN I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 851  ---------------VEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSV 894

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                           
Sbjct: 895  GSSFVATMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGH 954

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL      +PD D++F  D + E   Y +  +G E V +  T G++  K A   
Sbjct: 955  DIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTA--- 1011

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                    Y  V                        R     L    +DRL + S    G
Sbjct: 1012 --------YGFVKGY--------------------ERDHNLHLRGAEIDRLAKGST---G 1040

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAG 567
            + R    H  GI++        +P Y DV    P+             T F+   I    
Sbjct: 1041 VKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQEAEWKTTHFDFHSIHD-N 1091

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------T 613
            ++K D LG    T+++   D        ++   IP DD E   +               +
Sbjct: 1092 ILKLDILGHDDPTVIRMLQDLSG-----IEPKTIPTDDPEVMRIFEGPEVLGVDAEQIYS 1146

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +R  LE   P    +++ +  L     +          N +E I  
Sbjct: 1147 KTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRR 1199

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y    +  A L SG +    + +R+    KI +E+   ++ ++
Sbjct: 1200 GEANLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNKIPDEL---RDTYL 1252

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   +N +      +  ++      Y F K+HAAAY +++ + A+ K ++P+ +  A  +
Sbjct: 1253 NAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFS 1307

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + + C +  +   +  M  
Sbjct: 1308 VRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMID 1367

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +     A+  +G   A+ I+ A  ++PF S ED  +R    K+++
Sbjct: 1368 LYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATR---GKVSK 1424

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1425 TLIEYMNENGVL 1436


>gi|313124033|ref|YP_004034292.1| DNA polymerase iii, alpha subunit (gram-positive type) (polc)
            [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280596|gb|ADQ61315.1| DNA polymerase III, alpha subunit (Gram-positive type) (PolC)
            [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 1445

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 173/800 (21%), Positives = 300/800 (37%), Gaps = 204/800 (25%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT+++ ++ + +    DVL+A          +R +  PD +     EM+  FS + E
Sbjct: 735  PVVATSDAHYIDKHEAIYRDVLLAAQRGN----PNRNKQHPDLHFYTTQEMLDEFSFMGE 790

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
             +   V I+              P  I    D+  +  ++E     +     R+ +    
Sbjct: 791  DIAKEVVISN-------------PNKINAMIDEGVQPVQDESFPPKIPHTAERVRKLTYD 837

Query: 330  KGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
            K +         + + RLD EL+ I    +   +LI    +  + K+   VG  RGS   
Sbjct: 838  KAHELYGDPLPDNIQARLDRELDAIIGNGYGVVYLISQMLVAKSVKDGYLVG-SRGSVGS 896

Query: 384  SVTAYALTITDIDPL------------RF-----------------------------SL 402
            S+ A  + IT+I+P+             F                             ++
Sbjct: 897  SLVATMMGITEINPMPPHYRCPKCKQSEFFENGEYASGFDLPDKKCPDCQVMMVKDGQNI 956

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL      +PD D++F  D +     +++  +G     +  T G+L  K A   +G
Sbjct: 957  PFETFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPNHSFKAGTVGTLADKKA---IG 1013

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             A                    HP             E ++ +  VDRL   +  + G+ 
Sbjct: 1014 YAKHY--------------QDEHP-------------EIKMNNAEVDRL---AIGVTGVK 1043

Query: 523  RHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
                 H AGIV+   D+ + +L P+     D+  +   T F+   I    L+KFD LG +
Sbjct: 1044 ATTGQHPAGIVVLPDDKDIYELTPLQYPSDDISKEWKTTHFDFHQIHD-NLLKFDILGHQ 1102

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQL 623
              T+++   D        +D   IP DD +   L ++               GTLG+ + 
Sbjct: 1103 DPTMIRMLQDLSG-----IDPLTIPTDDPKVMSLFSSPEALGVTPEQINSKTGTLGLPEF 1157

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLI 678
             +  +R  LE  +P    +++ +  L        G  + ++      NG  K+ S+    
Sbjct: 1158 GTPFVRGMLEETKPSTFAELLQISGLSHGTDVWLGNAEELI-----NNGTCKLKSVIGCR 1212

Query: 679  DPMLKET--QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE-MDKQKERFISG 735
            D ++ +    GV   +E+V          + S  + +R+  GK I +E M   KE     
Sbjct: 1213 DNIMTDLIRWGV---KEEV----------AFSTMETVRK--GKGISDENMAVLKE----- 1252

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                  +K I         K   Y F K+HAAAY +++ + AW K +YP  + AA  ++ 
Sbjct: 1253 ------NKNIPDWYIPSCLKIK-YMFPKAHAAAYILMALRVAWFKVYYPEIYYAAYFSVR 1305

Query: 796  MDNVE--------------------------KIKKFCQDARQFNIQIMPPSVNTPCVD-- 827
             D V+                          K++K  Q   +   + +   +N   VD  
Sbjct: 1306 ADKVDLEAMSRGKNTVVALINRIKEKGTAATKLEKDLQTYMELVNEAIERGINFKMVDIN 1365

Query: 828  ------FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD-SKKL-- 877
                  +K+ D + I     A+ G+G + A+ I+ A ++ PF S ED   R   S+K+  
Sbjct: 1366 ESEATTYKIVDKHTILAPFNAVDGLGDSAAKQIVAARSEAPFLSKEDLQVRGKVSQKIMD 1425

Query: 878  ---NRRVLESLVFAGALDCF 894
               N  VLE +     L  F
Sbjct: 1426 FFENNNVLEGMPDQNQLSLF 1445


>gi|229086370|ref|ZP_04218547.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
 gi|228696982|gb|EEL49790.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
          Length = 1433

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 200/922 (21%), Positives = 342/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS V L++T++ G + L +LVS  +L +   +  R+  S L++   EGLI+ T    G +
Sbjct: 607  PSHVTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGLIVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  ++     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDAMYRKIL--ISSQGGANPLNRHSLPPVHF-RTTDEMLDCFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT ++A   S I  VH P+                +++L    + G   E
Sbjct: 782  EEKAKEIVVTNTQKVA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822  TRDMSYEMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 881  SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPTCNIPY 940

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 941  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEK 1000

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1001 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1026

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1027 SGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQFPADSIGAEWRTTHFDFHS 1078

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        VD   IP DD E   + +         
Sbjct: 1079 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----VDPKTIPTDDPEVMKIFSGPESLGVTE 1132

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1133 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1193 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1235

Query: 725  MDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +++ +   + G       K               Y F K+HAAAY +++ + A+ K H+
Sbjct: 1236 WEEEMRNNNVPGWYIESCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------ 822
             + F AA  T+  D  +VE + K     R       Q  +   P   +            
Sbjct: 1283 ALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   DF +  + +     A+ G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATDFIIDGDTLIPPFNAVPGLGTNAAVSIVEARENGEFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    K+++ ++E L   G L
Sbjct: 1403 QR---SKVSKTIIEYLDSQGCL 1421


>gi|312985340|gb|ADR30813.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|312985344|gb|ADR30815.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 110/241 (45%), Gaps = 29/241 (12%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +  +  N      + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLNYDTKNA-----YLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY     IKG+       I+E  ++   F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGVIYVGFGKIKGLNRKVIDEIVEERNSHGLFSGLTDFLQRMAGSDIGESDIVQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKF 943
            L +AG+LD FGY+R +L                 +TN    I A E  G+   +  +   
Sbjct: 116  LTYAGSLDHFGYNRQEL-----------------KTNAASLITAMEFGGSLLSETKISAI 158

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVV 1002
               +   R  +E+ VLGF  SGHP+D  +  + K   KGY + +  ++ + I ++A M+ 
Sbjct: 159  GEMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVK---KGYTQ-INDLKADQIVKMAVMID 214

Query: 1003 S 1003
            S
Sbjct: 215  S 215


>gi|325126001|gb|ADY85331.1| DNA polymerase III alpha chain [Lactobacillus delbrueckii subsp.
            bulgaricus 2038]
          Length = 1445

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 172/800 (21%), Positives = 299/800 (37%), Gaps = 204/800 (25%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT+++ ++ + +    DVL+A          +R +  PD +     EM+  FS + E
Sbjct: 735  PVVATSDAHYIDKHEAIYRDVLLAAQRGN----PNRNKQHPDLHFYTTQEMLDEFSFMGE 790

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
             +   V I+              P  I    D+  +  ++E     +     R+ +    
Sbjct: 791  DIAKEVVISN-------------PNKINAMIDEGVQPVQDESFPPKIPHTAERVRKLTYD 837

Query: 330  KGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
            K +         + + RLD EL+ I    +   +LI    +  + K+   VG  RGS   
Sbjct: 838  KAHELYGDPLPDNIQARLDRELDAIIGNGYGVVYLISQMLVAKSVKDGYLVG-SRGSVGS 896

Query: 384  SVTAYALTITDIDPL------------RF-----------------------------SL 402
            S+ A  + IT+I+P+             F                             ++
Sbjct: 897  SLVATMMGITEINPMPPHYRCPKCKQSEFFENGEYASGFDLPDKKCPDCQVMMVKDGQNI 956

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL      +PD D++F  D +     +++  +G     +  T G+L  K A+  V 
Sbjct: 957  PFETFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPNHSFKAGTVGTLADKKAIGYVK 1016

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                                  HP             E ++ +  VDRL   +  + G+ 
Sbjct: 1017 HYQD-----------------EHP-------------EIKMNNAEVDRL---AIGVTGVK 1043

Query: 523  RHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
                 H AGIV+   D+ + +L P+     D+  +   T F+   I    L+KFD LG +
Sbjct: 1044 ATTGQHPAGIVVLPDDKDIYELTPLQYPSDDISKEWKTTHFDFHQIHD-NLLKFDILGHQ 1102

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQL 623
              T+++   D        +D   IP DD +   L ++               GTLG+ + 
Sbjct: 1103 DPTMIRMLQDLSG-----IDPLTIPTDDPKVMSLFSSPEALGVTPEQINSKTGTLGLPEF 1157

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLI 678
             +  +R  LE  +P    +++ +  L        G  + ++      NG  K+ S+    
Sbjct: 1158 GTPFVRGMLEETKPSTFAELLQISGLSHGTDVWLGNAEELI-----NNGTCKLKSVIGCR 1212

Query: 679  DPMLKET--QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE-MDKQKERFISG 735
            D ++ +    GV   +E+V          + S  + +R+  GK I +E M   KE     
Sbjct: 1213 DNIMTDLIRWGV---KEEV----------AFSTMETVRK--GKGISDENMAVLKE----- 1252

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                  +K I         K   Y F K+HAAAY +++ + AW K +YP  + AA  ++ 
Sbjct: 1253 ------NKNIPDWYIPSCLKIK-YMFPKAHAAAYILMALRVAWFKVYYPEIYYAAYFSVR 1305

Query: 796  MDNVE--------------------------KIKKFCQDARQFNIQIMPPSVNTPCVD-- 827
             D V+                          K++K  Q   +   + +   +N   VD  
Sbjct: 1306 ADKVDLEAMSRGKNTVVALINRIKEKGTAATKLEKDLQTYMELVNEAIERGINFKMVDIN 1365

Query: 828  ------FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD-SKKL-- 877
                  +K+ D + I     A+ G+G + A+ I+ A ++ PF S ED   R   S+K+  
Sbjct: 1366 ESEATTYKIVDKHTILAPFNAVDGLGDSAAKQIVAARSEAPFLSKEDLQVRGKVSQKIMD 1425

Query: 878  ---NRRVLESLVFAGALDCF 894
               N  VLE +     L  F
Sbjct: 1426 FFENNNVLEGMPDQNQLSLF 1445


>gi|315111548|ref|YP_813210.2| DNA polymerase III, alpha subunit ( type) [Lactobacillus delbrueckii
            subsp. bulgaricus ATCC BAA-365]
          Length = 1445

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 172/800 (21%), Positives = 299/800 (37%), Gaps = 204/800 (25%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT+++ ++ + +    DVL+A          +R +  PD +     EM+  FS + E
Sbjct: 735  PVVATSDAHYIDKHEAIYRDVLLAAQRGN----PNRNKQHPDLHFYTTQEMLDEFSFMGE 790

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
             +   V I+              P  I    D+  +  ++E     +     R+ +    
Sbjct: 791  DIAKEVVISN-------------PNKINAMIDEGVQPVQDESFPPKIPHTAERVRKLTYD 837

Query: 330  KGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
            K +         + + RLD EL+ I    +   +LI    +  + K+   VG  RGS   
Sbjct: 838  KAHELYGDPLPDNIQARLDRELDAIIGNGYGVVYLISQMLVAKSVKDGYLVG-SRGSVGS 896

Query: 384  SVTAYALTITDIDPL------------RF-----------------------------SL 402
            S+ A  + IT+I+P+             F                             ++
Sbjct: 897  SLVATMMGITEINPMPPHYRCPKCKQSEFFENGEYASGFDLPDKKCPDCQVMMVKDGQNI 956

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL      +PD D++F  D +     +++  +G     +  T G+L  K A+  V 
Sbjct: 957  PFETFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPNHSFKAGTVGTLADKKAIGYVK 1016

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                                  HP             E ++ +  VDRL   +  + G+ 
Sbjct: 1017 HY-----------------QDEHP-------------EIKMNNAEVDRL---AIGVTGVK 1043

Query: 523  RHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
                 H AGIV+   D+ + +L P+     D+  +   T F+   I    L+KFD LG +
Sbjct: 1044 ATTGQHPAGIVVLPDDKDIYELTPLQYPSDDISKEWKTTHFDFHQIHD-NLLKFDILGHQ 1102

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQL 623
              T+++   D        +D   IP DD +   L ++               GTLG+ + 
Sbjct: 1103 DPTMIRMLQDLSG-----IDPLTIPTDDPKVMSLFSSPEALGVTPEQINSKTGTLGLPEF 1157

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLI 678
             +  +R  LE  +P    +++ +  L        G  + ++      NG  K+ S+    
Sbjct: 1158 GTPFVRGMLEETKPSTFAELLQISGLSHGTDVWLGNAEELI-----NNGTCKLKSVIGCR 1212

Query: 679  DPMLKET--QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE-MDKQKERFISG 735
            D ++ +    GV   +E+V          + S  + +R+  GK I +E M   KE     
Sbjct: 1213 DNIMTDLIRWGV---KEEV----------AFSTMETVRK--GKGISDENMAVLKE----- 1252

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                  +K I         K   Y F K+HAAAY +++ + AW K +YP  + AA  ++ 
Sbjct: 1253 ------NKNIPDWYIPSCLKIK-YMFPKAHAAAYILMALRVAWFKVYYPEIYYAAYFSVR 1305

Query: 796  MDNVE--------------------------KIKKFCQDARQFNIQIMPPSVNTPCVD-- 827
             D V+                          K++K  Q   +   + +   +N   VD  
Sbjct: 1306 ADKVDLEAMSRGKNTVVALINRIKEKGTAATKLEKDLQTYMELVNEAIERGINFKMVDIN 1365

Query: 828  ------FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD-SKKL-- 877
                  +K+ D + I     A+ G+G + A+ I+ A ++ PF S ED   R   S+K+  
Sbjct: 1366 ESEATTYKIVDKHTILAPFNAVDGLGDSAAKQIVAARSEAPFLSKEDLQVRGKVSQKIMD 1425

Query: 878  ---NRRVLESLVFAGALDCF 894
               N  VLE +     L  F
Sbjct: 1426 FFENNNVLEGMPDQNQLSLF 1445


>gi|294783112|ref|ZP_06748436.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium
            sp. 1_1_41FAA]
 gi|294479990|gb|EFG27767.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium
            sp. 1_1_41FAA]
          Length = 1449

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 191/919 (20%), Positives = 344/919 (37%), Gaps = 211/919 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
            ++ +I++ V T EG + + +LVS+ ++   G +  RI  S L+E   EGLI+   GSS  
Sbjct: 608  SLKNIMVQVKTQEGLKNMYKLVSKGHIKYFGNKKARIPKSVLKE-NREGLIV---GSSLS 663

Query: 155  IDRAFFFNSSQVAE-------------KRLLTFKKLFGDRLYVNLQRHRG------YDRY 195
               A F NS ++ E              +   + +L     Y  L    G      YD  
Sbjct: 664  ---AHFMNSGELVELYLRHDLEKLEETAKFYDYIELLPKSTYNELIEKEGTGSLVSYDDV 720

Query: 196  RESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
             +       L     + + A++N  +L E +     +L+    S  V   ++ RV    Y
Sbjct: 721  EKMNKYFYDLGKRLGILVTASSNVHYLDENEDIIRSILLF--GSGTVYSPNQYRVNNGFY 778

Query: 254  LKNRSEMVSIFSDLPEA------LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   EM+  FS L E       + NT +IA     + +   PI   F   + D+ ++  
Sbjct: 779  FRTTDEMLKEFSYLGEQEAKEVIITNTNKIA---DMVEEGIKPIPEGFYPPKMDNAEEIV 835

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
                  KA      R+    +     A     RL+ ELN I    FS  +L     ++ +
Sbjct: 836  RTMTYEKAY-----RIYGDPLPNIVSA-----RLERELNAIINNGFSVLYLSAQKLVKKS 885

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDID------------------------------- 396
              N   VG  RGS   S+ A+ + IT+++                               
Sbjct: 886  LDNGYLVG-SRGSVGSSLVAFMMGITEVNALYPHYICDNPECKHSEFIEKEGVGIDLPDK 944

Query: 397  -------PLR---FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                   PLR   +S+ FE F+      +PD D++F  + + E+ RY +  +G E V + 
Sbjct: 945  ICPNCGAPLRKDGYSIPFEVFMGFKGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKA 1004

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T  +L  K A      A  + Y + + L                            A  
Sbjct: 1005 GTISTLAEKNA-----EAYVIKYFEKNNL--------------------------EAAKA 1033

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMK 561
             + RL  + Q   G  +    H  G+VI      + +  P+ R   D  S+   T ++  
Sbjct: 1034 EIVRLGRLCQ---GAKKTTGQHPGGMVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYH 1090

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK------ 615
             +++  L+K D LG    T ++     L Q    +++  IP  D +T  + ++       
Sbjct: 1091 VMDEQ-LVKLDILGHDDPTTIK-----LLQEYTNMEIKDIPLADKDTLKIFSSTESLGVS 1144

Query: 616  --------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR--- 664
                    GT GI +  +  +RQ L   +P    +++ +  L       N+ + N +   
Sbjct: 1145 PEEIGTEIGTYGIPEFGTGFVRQMLIDTRPTTFAELVRISGLSHG---TNVWLNNAQEFV 1201

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +NG+  +  I  + D ++       +      +I +            +R+   KK  E 
Sbjct: 1202 RNGQATLSQIITVRDDIMNYLIDQGLDNSDAFKIMEF-----------VRKGKPKKEPEN 1250

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
             +            N + +    + +    +  +Y F K HA AY +++ + A+ K H P
Sbjct: 1251 WENY---------SNMMKEKNVPDWYIESCRRIEYMFPKGHAVAYVMMAMRIAYFKVHQP 1301

Query: 785  VEFLAASMTLEMDN---------------VEKIKKFCQ-DARQFN--------------- 813
            + F AA ++ + D+               +E++ K  + D ++ N               
Sbjct: 1302 LAFYAAFLSRKADDFDMEVMSKGVLAKQKLEELSKESKLDPKKKNEQAICEIVVELEARG 1361

Query: 814  IQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            I+++P  +  +    FK+ D +I   L  I G+G     +I++   +  F S+ED   R 
Sbjct: 1362 IELLPVDIYLSEGRKFKIEDGKIRIPLIGISGLGGAVIENILKEREETKFISVEDLKRRT 1421

Query: 873  DSKKLNRRVLESLVFAGAL 891
               K+++ V   L   GA 
Sbjct: 1422 ---KMSQTVANKLKSIGAF 1437


>gi|224383930|gb|ACN42761.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 110/241 (45%), Gaps = 29/241 (12%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +  +  N      + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLNYDSKNA-----YLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY     IKG+       I+E  ++   F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGVIYVGFGKIKGLNRKVINEIVEERNSHGLFSGLTDFLQRMAGSDIGESDIIQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKF 943
            L +AG+LD FGY+R +L                 +TN    I A E  G+   +  +   
Sbjct: 116  LTYAGSLDHFGYNRQEL-----------------KTNAASLITAMEFGGSLLSETKISAI 158

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVV 1002
               +   R  +E+ VLGF  SGHP+D  +  + K   KGY + +  ++ + I ++A M+ 
Sbjct: 159  GEMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVK---KGYTQ-INDLKADQIVKMAVMID 214

Query: 1003 S 1003
            S
Sbjct: 215  S 215


>gi|116093619|gb|ABJ58772.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
            delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 1411

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 172/800 (21%), Positives = 299/800 (37%), Gaps = 204/800 (25%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT+++ ++ + +    DVL+A          +R +  PD +     EM+  FS + E
Sbjct: 701  PVVATSDAHYIDKHEAIYRDVLLAAQRGN----PNRNKQHPDLHFYTTQEMLDEFSFMGE 756

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
             +   V I+              P  I    D+  +  ++E     +     R+ +    
Sbjct: 757  DIAKEVVISN-------------PNKINAMIDEGVQPVQDESFPPKIPHTAERVRKLTYD 803

Query: 330  KGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
            K +         + + RLD EL+ I    +   +LI    +  + K+   VG  RGS   
Sbjct: 804  KAHELYGDPLPDNIQARLDRELDAIIGNGYGVVYLISQMLVAKSVKDGYLVG-SRGSVGS 862

Query: 384  SVTAYALTITDIDPL------------RF-----------------------------SL 402
            S+ A  + IT+I+P+             F                             ++
Sbjct: 863  SLVATMMGITEINPMPPHYRCPKCKQSEFFENGEYASGFDLPDKKCPDCQVMMVKDGQNI 922

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL      +PD D++F  D +     +++  +G     +  T G+L  K A+  V 
Sbjct: 923  PFETFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPNHSFKAGTVGTLADKKAIGYVK 982

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                                  HP             E ++ +  VDRL   +  + G+ 
Sbjct: 983  HYQD-----------------EHP-------------EIKMNNAEVDRL---AIGVTGVK 1009

Query: 523  RHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
                 H AGIV+   D+ + +L P+     D+  +   T F+   I    L+KFD LG +
Sbjct: 1010 ATTGQHPAGIVVLPDDKDIYELTPLQYPSDDISKEWKTTHFDFHQIHD-NLLKFDILGHQ 1068

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQL 623
              T+++   D        +D   IP DD +   L ++               GTLG+ + 
Sbjct: 1069 DPTMIRMLQDLSG-----IDPLTIPTDDPKVMSLFSSPEALGVTPEQINSKTGTLGLPEF 1123

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLI 678
             +  +R  LE  +P    +++ +  L        G  + ++      NG  K+ S+    
Sbjct: 1124 GTPFVRGMLEETKPSTFAELLQISGLSHGTDVWLGNAEELI-----NNGTCKLKSVIGCR 1178

Query: 679  DPMLKET--QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE-MDKQKERFISG 735
            D ++ +    GV   +E+V          + S  + +R+  GK I +E M   KE     
Sbjct: 1179 DNIMTDLIRWGV---KEEV----------AFSTMETVRK--GKGISDENMAVLKE----- 1218

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                  +K I         K   Y F K+HAAAY +++ + AW K +YP  + AA  ++ 
Sbjct: 1219 ------NKNIPDWYIPSCLKIK-YMFPKAHAAAYILMALRVAWFKVYYPEIYYAAYFSVR 1271

Query: 796  MDNVE--------------------------KIKKFCQDARQFNIQIMPPSVNTPCVD-- 827
             D V+                          K++K  Q   +   + +   +N   VD  
Sbjct: 1272 ADKVDLEAMSRGKNTVVALINRIKEKGTAATKLEKDLQTYMELVNEAIERGINFKMVDIN 1331

Query: 828  ------FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD-SKKL-- 877
                  +K+ D + I     A+ G+G + A+ I+ A ++ PF S ED   R   S+K+  
Sbjct: 1332 ESEATTYKIVDKHTILAPFNAVDGLGDSAAKQIVAARSEAPFLSKEDLQVRGKVSQKIMD 1391

Query: 878  ---NRRVLESLVFAGALDCF 894
               N  VLE +     L  F
Sbjct: 1392 FFENNNVLEGMPDQNQLSLF 1411


>gi|238927510|ref|ZP_04659270.1| DNA polymerase III, alpha subunit [Selenomonas flueggei ATCC 43531]
 gi|238884792|gb|EEQ48430.1| DNA polymerase III, alpha subunit [Selenomonas flueggei ATCC 43531]
          Length = 1255

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 216/1008 (21%), Positives = 366/1008 (36%), Gaps = 231/1008 (22%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  H+  S L+  +    +++  A    PA+AITD + +  A   +     A  +  I
Sbjct: 340  VELHAHTKMSALDAVVPPKVLVETAARWGWPAVAITD-HGVVQAFPEAMNTARALAKKGI 398

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS----RMYLLDQGKQ 127
              ++   M+  L         F     I+ L     G   L +LVS    R +   + + 
Sbjct: 399  DIKIIYGMEGYLVDGEDDARAF----HIIFLAKNKTGLYNLYKLVSLSHIRYFRGTKKRG 454

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL---------- 177
              R+  + LQ+   EG+I+ +   +G + R           + +  F             
Sbjct: 455  RPRVPRAVLQQ-HREGIIVGSACEAGELIRGIVAGRPNAELEEMAQFYDFLEIQPIHNND 513

Query: 178  ---FGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
               F DR  +      R  +R    +V +LA     PL+AT +  FL+ ED   +  ++ 
Sbjct: 514  FLKFDDRFPMQTDEDLRDINR----KVDELARKLGKPLIATCDVHFLNPED-AVYRAMIQ 568

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPI 291
             A+      +D  R  P  YL+   EM++ F  L    A E  V   RR +   +   PI
Sbjct: 569  KANG----YRDAER-QPPLYLRTTEEMLAEFDYLGAERAYECVVTNPRRIAEETERFLPI 623

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGL--EVRLAQGAIAKGYHAQDYRQ----RLDFEL 345
                             +EL    V G   E++    A A+  + ++  +    RL+ EL
Sbjct: 624  ----------------PDELYAPMVPGADREIQEMSYARARKLYGENLPKIVSDRLELEL 667

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------- 398
              I R  F+  ++I    ++ +  +   VG  RGS   S  A  + +T+++PL       
Sbjct: 668  KPILRHGFAALYIIAQRLVKKSNDDGYLVG-SRGSVGSSFVATMIGVTEVNPLPPHYRCP 726

Query: 399  -----RF-----------------------------SLLFERFLNPDRMSMPDFDIDFCQ 424
                 RF                             ++ F  FL  D   +PD D++F  
Sbjct: 727  HCQYNRFIDDGSVGSGFDLPSEDCPVCGTPLIKDGHNIPFAVFLGFDGDKVPDIDLNFSG 786

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D +    +Y +  +G   V +  T   LQ K A    G A+     Q             
Sbjct: 787  DYQPVAHKYTEVLFGKMNVFRAGTIAGLQDKNAY---GYAMHYYEDQ------------- 830

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QL 542
                            A    P ++ ++   +   G+      HA GI++  R +     
Sbjct: 831  ---------------GAAKGRPYIEHMM---RGCMGVKATTGQHAGGIMVVPRDMDVHYF 872

Query: 543  VPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             P+ R   ++ SD   T F+   I +  L+K D LG    T++ K L+ L  R    D  
Sbjct: 873  TPIQRPANNMESDTLTTHFDYHSISER-LVKLDILGHDDPTVI-KMLEELTHR----DPE 926

Query: 600  LIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             IPFDD  T  + T+               GT GI +  +S  ++ ++   PDC  D++ 
Sbjct: 927  TIPFDDPATMSIFTSTDALGITPEDLGANMGTYGIPEFRTSFTQKMIDDSNPDCFADLVR 986

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
             +S +  G   N+ + N +            LI       +  I  ++ +M        Y
Sbjct: 987  -ISGFSHG--TNVWLGNAQD-----------LIKAGTSTLKDAISARDDIMN-------Y 1025

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD---YGFN 762
             +     +   +  K  E + K +     G + + + K  A  I E   +      Y F 
Sbjct: 1026 LMQNG--IDPLLSFKTMENVRKGR-----GIAPDVVEKLRAGGIPEWYIESCQKIKYLFP 1078

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTL---EMD-NV---------EKIKKFCQDA 809
            ++HA AY ++ Y+ A+ K HYP+ + AA  ++   E D N+           I     +A
Sbjct: 1079 RAHATAYVMMGYRIAFCKVHYPLAYYAAYFSIRAAEFDANIISKGKDAVRAAIDTLLAEA 1138

Query: 810  RQFNIQIMPPSVNTPCV-------------------------DFKVGDNRIYYSLAAIKG 844
            R+   ++     +T  V                          F + +  +     AI G
Sbjct: 1139 REHRGKLDNKKQDTLIVLQLAWEMYLRGFSCEPVDLYASDAEKFILHETSLLPPFTAIPG 1198

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +G   A+ I+EA  D  F S+ED  +R     +    +E L   G LD
Sbjct: 1199 MGQKAAQAIVEARRDGRFISVEDLATRA---HVAAPAIEVLRTHGCLD 1243


>gi|253582216|ref|ZP_04859439.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
            ATCC 27725]
 gi|251835755|gb|EES64293.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
            ATCC 27725]
          Length = 1446

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 179/910 (19%), Positives = 345/910 (37%), Gaps = 194/910 (21%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS----- 152
            +I++LV   +G   +  LVS  ++   G +  R+  S +++   EGLI+ +  SS     
Sbjct: 609  NIIVLVKNLQGLHNMYRLVSEAHVDYYGNKKPRVLKSHIEKY-REGLIIGSSLSSHFMND 667

Query: 153  GPIDRAFFFNSSQVAEKRL--LTFKKLFGDRLYVNLQRHRGYDRYRESQVVQ-------- 202
            G +   +     +  EK +    + +L     Y  L    G        +++        
Sbjct: 668  GELSNYYMRYDYEKIEKNIDFYDYIELLPKGAYSELYEDDGTGTISSFSMIEDMNKYFYN 727

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            LA      + A++N  +++E D +   +L+  + S  V ++++ +     Y +   E+V+
Sbjct: 728  LAKERGKLVTASSNVHYINETDSKIRSILLYGSGS--VYRENQYKTDNKFYFRTTEELVN 785

Query: 263  IFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
             F  + E  A E  V      + +++V  P+   F   + D+ +   +     KA     
Sbjct: 786  EFDYMGEDIAKEIVVSGTNTIADMIEVIKPVPDGFYPPKIDNAENIVKEMTYEKAY---- 841

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
             R+    + +   A     RL+ EL  I    FS  +L     ++ +  N   VG  RGS
Sbjct: 842  -RIYGNPLPEIVKA-----RLERELGAIIGNGFSVLYLSAQKLVKKSLDNGYLVG-SRGS 894

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ AY + IT+++ L                                          
Sbjct: 895  VGSSLVAYMMDITEVNALYPHYICTNPECKNSEFIEREGVGIDLPEKICPKCGQPYKRDG 954

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            +S+ FE F+  +   +PD D++F  + + E+ RY +  +G E V +  T  +L  K A  
Sbjct: 955  YSIPFEVFMGFNGEKVPDIDLNFSGEYQSEIHRYCEQLFGKENVFKAGTISTLAEKNAEG 1014

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V +  +    + +R                                    ++ +++K E
Sbjct: 1015 YVRKYFEEHEMKGNRA----------------------------------EIVRLAKKCE 1040

Query: 520  GLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            G  +    H  G+V+   D  + +  P+ +   D ++D   T F+   +++  L+K D L
Sbjct: 1041 GAKKTTGQHPGGMVVVPRDHSIYEFCPVQKPANDEKNDSITTHFDYHVMDEQ-LVKLDIL 1099

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            G    T ++     + Q    VD+  IP  D ET  + +   +LGI              
Sbjct: 1100 GHDDPTTIK-----MLQEYTGVDIYTIPIADPETLKIFSGTESLGI-------------- 1140

Query: 635  MQPDCIEDIIALVSLYRPG-PIDNIVVYNNRKNGKEKIVSIHPL---IDPMLKETQGVII 690
              P+ I  ++    +   G P    ++ +       ++V I  L    D  L   Q  I 
Sbjct: 1141 -TPEDINSVVGTFGVPEFGTPFVRQMLIDTMPKTFAELVRISGLSHGTDVWLNNAQEFIR 1199

Query: 691  YQE----QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK--------ERFISGASK 738
             ++    QV+ +   +  Y + +   L +    KI E + K K        E+F +   +
Sbjct: 1200 QKKATLSQVITVRDDIMNYLIDQG--LEKGTAFKIMEFVRKGKPSKDPEGWEKFSNEMKE 1257

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            + +++    +      +   Y F K HA AY +++ + A+ K HYP+ F AA ++ + ++
Sbjct: 1258 HDVAEWYIES-----CRRIKYMFPKGHAVAYVMMAMRIAYFKVHYPLAFYAAYLSRKAED 1312

Query: 799  VE-----------------------KIKK-----FCQ-----DARQFNIQIMPPSVNTPC 825
             +                        +KK      C+      AR +  + +P  V T  
Sbjct: 1313 FDYEIMSDPKTAKEHLAVLSKEPKLDVKKKAEMAICEIIVEMYARGY--EFLPIDVYTSA 1370

Query: 826  -VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
               F + D +I   L A+ G+G     ++++      F S ED   R    K+++ ++E 
Sbjct: 1371 GFKFTIEDGKIRIPLIALNGLGGAVIENLIKEREVSKFLSYEDLKRRT---KISQTIIEK 1427

Query: 885  LVFAGALDCF 894
            L    A+D  
Sbjct: 1428 LKSINAVDSL 1437


>gi|238852616|ref|ZP_04643026.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            gasseri 202-4]
 gi|238834762|gb|EEQ26989.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            gasseri 202-4]
          Length = 1432

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 160/766 (20%), Positives = 294/766 (38%), Gaps = 169/766 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT +S ++   +     +L+A   S      +R +  PD +  +  EM+  FS L E
Sbjct: 724  PVVATGDSHYVEPHEAIYRKILLAAQKSN----PNRNKKLPDLHFYSTQEMLDAFSFLGE 779

Query: 270  ------ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAVAGLE 320
                   +ENT ++A +   I  + + + P  IE   +E  D+   +  EL  K +  + 
Sbjct: 780  DVAKEIVIENTNKLADQIEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKI- 838

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                               R++ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 839  ----------------VEDRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 881

Query: 381  GAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFC-----QDR 426
               S+ A    IT+++PL         ++S  FE         +PD +   C     +D 
Sbjct: 882  VGSSLVATMSGITEVNPLAPHYRCPKCKYSKFFENGEYGSGYDLPDKNCPKCGTSLVKDG 941

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +D         +G ++V  I    S   +    +  R +              P++    
Sbjct: 942  QDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNYIRVM------------FGPDNSFRA 988

Query: 487  VSLQAIADDSRF---------REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--G 535
             ++  +AD + +          E  L +  +DRL   +    G+ R    H AGIV+   
Sbjct: 989  GTIATVADKTAYGYVKHYEDENELHLRNAELDRL---AAGASGVKRTTGQHPAGIVVVPD 1045

Query: 536  DRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            D  +    P+     D+ +    T F+   I    ++KFD LG    T+++     + Q 
Sbjct: 1046 DMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHD-NILKFDILGHDDPTMIR-----MLQD 1099

Query: 593  GVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPD 638
               +D   IP DD     L ++               GTLG+ +  +  +R  LE  +P 
Sbjct: 1100 LSGIDPLTIPPDDPGVMSLFSSPKILGVTPEQIQSKTGTLGVPEFGTKFVRGMLEETKPT 1159

Query: 639  CIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
               +++ +  L        G  ++++      NG  K+ ++    D ++ +     +  E
Sbjct: 1160 TFSELLQISGLSHGTDVWLGNAEDLI-----NNGTCKLKNVIGCRDNIMMDLIHWGVKPE 1214

Query: 694  -QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
                 +  +  G  +S+ ++       +I ++ DK  + +I    K              
Sbjct: 1215 VAFFTMESVRHGKGISDENM-------EILKKNDKIPDWYIPSCLK-------------- 1253

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD------------NVE 800
                  Y F K+HA AY +++ + AW K +YPV + A+  ++  D             V+
Sbjct: 1254 ----IKYMFPKAHATAYILMALRIAWFKVYYPVIYYASYFSVRADLFDLVAMSHGKNTVK 1309

Query: 801  KIKKFCQD---------------------ARQFNIQIMPPSVN-TPCVDFK-VGDNRIYY 837
               K  QD                       +  I+I    VN +  +DFK + D+ I  
Sbjct: 1310 AAMKEIQDKGMDVSAKDKSLLTVLEIANECLERGIKIKMVDVNESEAMDFKIIDDHTILA 1369

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
               A+ G+G   A+ I+ A A++ F S ED  +R    K+++ ++E
Sbjct: 1370 PFNAVPGLGDNAAKQIVAARAEQKFLSKEDLATR---GKVSQTIME 1412


>gi|225388986|ref|ZP_03758710.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme DSM
            15981]
 gi|225044966|gb|EEG55212.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme DSM
            15981]
          Length = 1561

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 167/778 (21%), Positives = 286/778 (36%), Gaps = 190/778 (24%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++V L      P+ AT +  FL  +D     ++MA         KD     P  YL+   
Sbjct: 838  RIVNLGEHFGKPVCATCDVHFLDPQDEVYRRIIMAGQ-----GFKDSDDQAP-LYLRTTE 891

Query: 259  EMVSIFSDL-PE-----ALENTVEIARRCSFILQVHA----PILP---RFIEKECDDIQK 305
            EM++ F  L P+      + NT +IA  C  I  V      P++P   + + K C D   
Sbjct: 892  EMLAEFDYLGPDKAQEVVVTNTRKIADMCEKISPVRPDKCPPVIPDSDKTLTKICYDRAH 951

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            E   E   K V                       RL+ EL+ I    F+  ++I    + 
Sbjct: 952  EMYGEDLPKIVV---------------------DRLERELHSIITNGFAVMYIIAQKLVW 990

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------------- 399
             + ++   VG  RGS   S  A    IT+++PL                           
Sbjct: 991  KSNEDGYLVG-SRGSVGSSFVATMSGITEVNPLSPHYHCPKCRYYDFDSEEVKKFSGMAG 1049

Query: 400  -------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                               F + FE FL       PD D++F  + + +   Y +  +G 
Sbjct: 1050 CDMPDKACPVCGTPLEKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHDYTEVIFGK 1109

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
             +  +  T G+L  K A   V +  +                                R 
Sbjct: 1110 GQTFRAGTIGTLADKTAYGYVKKYYEE-------------------------------RG 1138

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY-------RDVRSDL 553
            +R  +  ++R++   Q   G+ R    H  GI++   PL + +  +        D+ +  
Sbjct: 1139 SRKRNCEINRIV---QGCVGVRRTTGQHPGGIIV--LPLGEEIYSFTPVQHPANDMTTST 1193

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
              T F+   I+   L+K D LG    T+++   D      VK     IP D  E   L  
Sbjct: 1194 VTTHFDYHSIDH-NLLKLDILGHDDPTMIRMLQDLTGIDPVKD----IPLDSREVMSLFQ 1248

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE-KIV 672
            +   LGI   +  G      G+     +  + ++   +P    ++V      +G +  + 
Sbjct: 1249 STAALGITPDDIGGCPLGALGVPEFGTDFAMQMLIDTKPKYFSDLVRIAGLAHGTDVWLG 1308

Query: 673  SIHPLIDPMLKETQGVIIYQEQVM--QIAQLLS-GYSLSEADVLRRAMGKKIKEEMDKQK 729
            +   LI       Q  I  ++ +M   IAQ +  G S +  + +R+  GK +K++     
Sbjct: 1309 NAQTLIQEGKATIQTAICTRDDIMIYLIAQGMDEGLSFTIMESVRK--GKGLKDD----- 1361

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              +I+  + +G+ +      +    K   Y F K+HAAAY +++++ A+ K  YP+ + A
Sbjct: 1362 --WITEMTAHGVPEW-----YIWSCKKIKYMFPKAHAAAYVMMAWRIAYCKIFYPLAYYA 1414

Query: 790  ASMTLEMD-----------------------NVEKIKKFCQD------------ARQFNI 814
            A  ++                           V+ + K  QD            AR F+ 
Sbjct: 1415 AFFSIRASAFSYEIMCQGRDKLEYYLADYKKRVDTLSKKEQDTLRDMRIVQEMYARGFDF 1474

Query: 815  QIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              MP  +      DF+V D +I  SL++I G+G   A  +++A  D  F S+EDF +R
Sbjct: 1475 --MPLDIYRAKARDFQVIDGKIMPSLSSIDGLGDKAAEAVVDAVKDGAFLSIEDFSNR 1530


>gi|222097262|ref|YP_002531319.1| DNA polymerase iii polc [Bacillus cereus Q1]
 gi|221241320|gb|ACM14030.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
          Length = 1433

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 199/922 (21%), Positives = 344/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS ++L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMILLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L+ ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLNPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 782  EDVAKEIVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822  TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 881  SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPTCNIPY 940

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 941  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEK 1000

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1001 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1026

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1027 AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQYPADSIGAEWRTTHFDFHS 1078

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        +D   IP DD E   + +         
Sbjct: 1079 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTE 1132

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1133 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1193 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1235

Query: 725  MDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  K   + G   +   K               Y F K+HAAAY +++ + A+ K H+
Sbjct: 1236 WEEDMKSNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------ 822
             + F AA  T+  D  +VE + K     R       Q  +   P   +            
Sbjct: 1283 ALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   DF +  + +     A+ G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGEFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    K+++ ++E L   G L
Sbjct: 1403 QR---SKVSKTIIEYLDSQGCL 1421


>gi|326389440|ref|ZP_08211007.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW
            200]
 gi|325994445|gb|EGD52870.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW
            200]
          Length = 1407

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 195/910 (21%), Positives = 336/910 (36%), Gaps = 211/910 (23%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            V  + +LV   +G + L E++S+  L +   ++ RI  S L  +  EGLI+ +    G +
Sbjct: 583  VYHVTILVKDQKGLRNLYEIISKSNL-EYFHRTPRIPKSLLISM-REGLIIGSACEQGEV 640

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTH 207
             RA   N  +   + +++F      + +  +   +     +  +  RE   ++  L   +
Sbjct: 641  FRAIVSNLEEKKLENIISFYDYLEVQPVGNNEFLIEKGEVKSVEELREINQKIYLLGKKY 700

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
               +VAT +  FL   D     +LMA         KD  R  P  Y K   EM+  F  L
Sbjct: 701  NKLVVATGDVHFLDPWDDIYRKILMAGK-----GYKDADR-QPPLYFKTTDEMLKEFEYL 754

Query: 268  PE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
             E       ++N  +IA     +  +     P  IE          E ELR         
Sbjct: 755  GEEVAKEIVIDNPNKIADLVEEVKPIPDGTFPPVIEGA--------EEELR--------- 797

Query: 322  RLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            RL      + Y     +  + RLD ELN I    ++  ++I    +  + K+   VG  R
Sbjct: 798  RLTLDKAHEIYGDPLPEIVQNRLDRELNSIINNGYAVMYIIAQKLVSKSLKDGYLVG-SR 856

Query: 379  GSGAGSVTAYALTITDIDPL---------------------------------------- 398
            GS   S+ A    IT+++PL                                        
Sbjct: 857  GSVGSSLVATMSGITEVNPLPPHYVCPNCKYSEFITDGSYGCGVDMPDKTCPHCGTLMRK 916

Query: 399  -RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
              F + FE FL  +    PD D++F  + +    +Y +  +G   V +  T G+L  K A
Sbjct: 917  DGFDIPFEVFLGFEGDKEPDIDLNFSGEYQPIAHKYTEELFGKGHVFRAGTIGTLADKTA 976

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
               V +  +                                R   +    + RL   +  
Sbjct: 977  YGYVKKYFEE-------------------------------RNLIVHKSEIKRL---TVG 1002

Query: 518  LEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFD 572
              G+ R    H  GI++   D+ +    P+        +D+  T F+   I    L+K D
Sbjct: 1003 CTGVKRTTGQHPGGIMVVPKDKSIYDFTPIQHPADAEDTDVITTHFDYHSI-SGRLLKLD 1061

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTL 618
             LG    T+++   D        ++   IP DD +T  L T+               GTL
Sbjct: 1062 ILGHDDPTVIRMLEDLTG-----INAREIPLDDKKTMSLFTSVEALGIDPEELNTPVGTL 1116

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G+ +  +  +RQ L   +P    +++ +  L       ++ + N +   +E I +     
Sbjct: 1117 GLPEFGTKFVRQMLIDTRPTTFAELVRISGLSHGT---DVWLNNAQDIIREGIAT----- 1168

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK---ERFISG 735
               LKE   VI  ++ +M        Y +S+   + + +  KI E + K K   +  I  
Sbjct: 1169 ---LKE---VISTRDDIML-------YLISKG--MDKKLSFKIMENVRKGKGVTQEEIEE 1213

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              K+G+      N F    +   Y F K+HA AY +++++ A+ K HYP  F A   T+ 
Sbjct: 1214 MRKHGVP-----NWFIESCQKIKYMFPKAHAVAYVIMAFRIAYFKVHYPEAFYATYFTVR 1268

Query: 796  MDNV---------EKIKKFCQ--DARQFNIQIMPPSVNT--------------------- 823
             D+          + IK   +  +A+  N      S+ T                     
Sbjct: 1269 ADDFNLDIVLKGKDSIKNAIKEIEAKGNNASPKEKSLLTVLEVALEMYLRGFKFINVDLY 1328

Query: 824  --PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                V F + +  +   L +++GVG   A+ I +   +  F S+EDF +R    K+++ V
Sbjct: 1329 KSDAVKFLITEEGLLPPLNSLEGVGIQAAKTIAQERENGKFLSVEDFRNRT---KVSKTV 1385

Query: 882  LESLVFAGAL 891
            +E L   G L
Sbjct: 1386 IEILKQYGCL 1395


>gi|302670324|ref|YP_003830284.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316]
 gi|302394797|gb|ADL33702.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316]
          Length = 1529

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 158/804 (19%), Positives = 297/804 (36%), Gaps = 187/804 (23%)

Query: 193  DRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            D  RE   ++V+L      P+VAT ++ FL+ ED     ++MA     +  ++  P    
Sbjct: 791  DDIREINKEIVRLGEQFNKPVVATCDAHFLNPEDEIYRTIIMA--GKGMNDEEPAPL--- 845

Query: 251  DHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              +L+   EM++ F  L         ++NT +I   C  I  V     P  IE   + + 
Sbjct: 846  --FLRTTEEMMAEFDYLGGDKAKEIVIDNTRKILDMCDSISPVRPDKCPPVIENSDEILT 903

Query: 305  K---EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            K   ++ +E+  + +  +                  ++RL+ ELN I +  F+  ++I  
Sbjct: 904  KICYDKAHEIYGEELPEI-----------------VQERLERELNSIIKNGFAVMYIIAQ 946

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------- 399
              +  + ++   VG  RGS   S  A+   IT+++ L                       
Sbjct: 947  KLVWKSNEDGYLVG-SRGSVGSSFVAFTSGITEVNSLSPHYVCPKCKYSDFDSPEVLAFG 1005

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                   F + FE FL       PD D++F  + + +  +Y + 
Sbjct: 1006 GNSGCDMPDKRCPKCGTMMYKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHKYTEV 1065

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G+ +  +  T  SL  K A   V                                   
Sbjct: 1066 IFGYGQTFRAGTIASLADKTAFGFV----------------------------------K 1091

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV- 555
            ++ +   A      +  I Q   G+ R    H  GI++        +P+  ++ S  PV 
Sbjct: 1092 KYYDGIGASKRKSEINRIVQGCTGIRRGTGQHPGGIIV--------LPVGENINSFCPVQ 1143

Query: 556  ------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
                        T ++   I+   L+K D LG    T+++    FL Q    +D  L+P 
Sbjct: 1144 HPANDMTTATITTHYDYHSIDH-NLLKLDILGHDDPTMIR----FL-QDCTGLDPKLVPL 1197

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD     L      L +   +  G +    G+     +  + +V    P  + +++  + 
Sbjct: 1198 DDKNVMSLFMNTTALNVTPEQLGGTKLGCLGLPEFGTDFAMQMVIDAGPSSLSHLIRISG 1257

Query: 664  RKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
              +G +  + +   LI          I  ++ +M I  +  G   SE+  +  A+ K K+
Sbjct: 1258 LSHGTDVWLGNAQTLIQEGTATIDTCICCRDDIM-IYLIQKGLDKSESFKIMEAVRKGKV 1316

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
                +K    +     ++G+      + +    +   Y F K+HAAAY +++++ A+ K 
Sbjct: 1317 AGGKEKNWPEWKKDMIEHGVP-----DWYIWSCEKIKYMFPKAHAAAYVMMAWRIAYFKV 1371

Query: 782  HYPVEFLAASMTL-----------------------------EMDNVEKIK----KFCQD 808
            + P  F AA  ++                             E+ N ++ +    +  ++
Sbjct: 1372 YIPQAFYAAWFSIRAKAFNYEHMCLGENHLHAIMREYQNKKDELTNAQQAEYGDMRLVEE 1431

Query: 809  ARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
              +  I+ MP  +      DF+V  ++I  +L +I G+G   A  I+EA+ D PF S +D
Sbjct: 1432 MYERGIEFMPIDIFKVKSRDFQVIGDKIMPALTSIDGMGEKAADQIVEAAKDGPFLSKDD 1491

Query: 868  FCSRVDSKKLNRRVLESLVFAGAL 891
            F  R    K  + V+E +   G L
Sbjct: 1492 FRQRT---KCPQGVIEKMADMGLL 1512


>gi|56963998|ref|YP_175729.1| DNA polymerase III PolC [Bacillus clausii KSM-K16]
 gi|56910241|dbj|BAD64768.1| DNA polymerase III alpha subunit PolC [Bacillus clausii KSM-K16]
          Length = 1430

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 198/916 (21%), Positives = 327/916 (35%), Gaps = 227/916 (24%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             LLV++  G + L +LVS M  +D   ++ RI  S L +   EGL++ +    G +    
Sbjct: 608  TLLVTSQTGLKNLYQLVS-MSHVDYYFRTPRIPRSQLNK-HREGLLIGSACDKGEVFEGM 665

Query: 160  FFNSSQVAEK-----RLLTFKKL--FGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
               S+   EK       L  + L  +G  +   L + +   +     +V L     LP+V
Sbjct: 666  MQKSADEVEKIAGFYDFLEIQPLGNYGHLIERELVKDKTALQEIVGNIVALGERLGLPVV 725

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL-PEAL 271
            AT N  +L+EED     +L+A         K +    PD + +  +EM+  FS L  E  
Sbjct: 726  ATGNVHYLNEEDAIYRKILIASQGGANPLNKQK---LPDVHFRTTTEMLEEFSFLGAEQA 782

Query: 272  ENTV-----EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
            E  V     +IA +   +  +   +    IE   D+I+       R K + G  +     
Sbjct: 783  EKVVVTASNDIAAQVGDVHPIPDDLYAPKIEGADDEIRNMSYE--RAKMIYGDPL----- 835

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                    +    RL  EL  I    F+  +LI    ++ +  +   VG  RGS   S  
Sbjct: 836  -------PEIVEARLQKELKSIIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSFV 887

Query: 387  AYALTITDIDPL------------RF-----------------------------SLLFE 405
            A    IT+++PL             F                              + FE
Sbjct: 888  ATMTEITEVNPLPPHYVCPSCKHSHFFDDGSVASGYDLPDAECPKCGSMYIKDGQDIPFE 947

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
             FL      +PD D++F  + +     Y +  +G + V +  T G++  K A        
Sbjct: 948  TFLGFKGDKVPDIDLNFSGEYQPRAHAYTKELFGEDYVYRAGTIGTVADKTA-------- 999

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
               Y  V    K   ND            D   R A      +DRL+       G+ R  
Sbjct: 1000 ---YGYV----KGYQND-----------HDLLMRGAE-----IDRLV---AGCTGVKRTT 1033

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFD 572
              H  GI++        VP Y D+    P+             T F+   I    L+K D
Sbjct: 1034 GQHPGGIIV--------VPDYMDIHDFSPIQYPADDKNAEWKTTHFDFHSIHD-NLLKLD 1084

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY--------------HLLTTKGTL 618
             LG    T ++   D        +D   IP DD E                 +L   GTL
Sbjct: 1085 ILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPEVMKIFASPDVLGVTEEQILCKTGTL 1139

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNRKNGKEKIVSI 674
            GI +  +  +RQ LE  +P    +++ +  L     +     N ++YN     K+ I   
Sbjct: 1140 GIPEFGTRFVRQMLEETKPSTFSELLQISGLSHGTDVWLGNANELIYNGTCELKDVIGC- 1198

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK--EEMDKQK--E 730
                         +++Y    +    L S  +    + +R+  G + +  EEM K    +
Sbjct: 1199 ----------RDDIMVY----LIYKGLESSLAFKIMEFVRKGKGLQPEWVEEMKKHDVPD 1244

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             +I   +K                    Y F K+HAAAY +++ + A+ K H+P+ + A 
Sbjct: 1245 WYIDSCTK------------------IKYMFPKAHAAAYVLMAVRIAYFKVHHPILYYAT 1286

Query: 791  SMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS--------------------- 820
              T+  D+ E          I+   ++     +   P                       
Sbjct: 1287 YFTVRADDFELDIMIKGASSIRAKMEEINAKGLDASPKEKAVLTVLELSLEMCERGFGFH 1346

Query: 821  ----VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
                  +   +F V  +++     A+ GVGT  A +I++A  +  F S ED   R    +
Sbjct: 1347 KVDLYKSSATEFIVDGDKLLPPFNALNGVGTNAALNIVKARENGHFLSKEDLQQRA---R 1403

Query: 877  LNRRVLESLVFAGALD 892
            L + V+E+L   G L+
Sbjct: 1404 LTKTVVENLSEHGCLE 1419


>gi|295399848|ref|ZP_06809829.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
            C56-YS93]
 gi|312111640|ref|YP_003989956.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|294978251|gb|EFG53848.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
            C56-YS93]
 gi|311216741|gb|ADP75345.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1]
          Length = 1436

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 166/813 (20%), Positives = 287/813 (35%), Gaps = 220/813 (27%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++V L     +P+VAT N  +L+ ED     +L+   HS   +        PD Y +   
Sbjct: 718  KIVMLGEKLNIPVVATGNVHYLNREDKIYRKILI---HSQGGANPLNRYELPDVYFRTTD 774

Query: 259  EMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE--EENELRNK 314
            EM+  FS L E  A E  V   ++ + ++    PI  +      +  ++E  E +  R K
Sbjct: 775  EMLECFSFLGEEKAKEIVVTNPQKIASLIDEVKPIKDKLYTPRIEGAEEEIREMSYRRAK 834

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
             + G  +             +   QRL+ EL  I    F+  +LI    ++ +  +   V
Sbjct: 835  EIYGDPL------------PEIVEQRLEKELKSIIGHGFAVIYLISHKLVKKSLDDGYLV 882

Query: 375  GPGRGSGAGSVTAYALTITDIDPL------------------------------------ 398
            G  RGS   S  A    IT+++PL                                    
Sbjct: 883  G-SRGSVGSSFVATMTEITEVNPLPPHYVCPNCKHSEFFNDGSVGSGFDLPDKNCPKCGT 941

Query: 399  -----RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
                    + FE FL      +PD D++F  + +     Y +  +G + V +  T G++ 
Sbjct: 942  KYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDNVYRAGTIGTVA 1001

Query: 454  AKAALRDV-GRA----LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
             K A   V G A    LQ+  +++DRL                                 
Sbjct: 1002 DKTAYGFVKGYASDLNLQLRSAEIDRL--------------------------------- 1028

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV------------- 555
                  +    G+ R    H  GI++        VP Y D+    P+             
Sbjct: 1029 ------AAGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPADDTSSEWRT 1074

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T F+   I    L+K D LG    T+++   D        +D   IP DD E   + ++ 
Sbjct: 1075 THFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSST 1128

Query: 616  --------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
                          GTLGI +  +  +RQ LE  +P    +++ +  L     +      
Sbjct: 1129 ESLGVTPEQIMCNVGTLGIPEFGTRFVRQMLEETRPKTFSELVQISGLSHGTDV------ 1182

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
                N +E I +    +  ++     +++Y   + +  +    + + E+    + +  + 
Sbjct: 1183 -WLGNAQELIQNGTCTLSEVIGCRDDIMVY--LIYRGLEPSLAFKIMESVRKGKGLTPEF 1239

Query: 722  KEEMDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            +EEM K    E +I    K                    Y F K+HA AY +++ + A+ 
Sbjct: 1240 EEEMRKHNVPEWYIESCKK------------------IKYMFPKAHATAYVLMAVRIAYF 1281

Query: 780  KTHYPVEFLAASMTLEMDN----------------VEKIK-------------------- 803
            K HYP+ + A   T+  ++                +E+I                     
Sbjct: 1282 KVHYPLLYYATYFTVRAEDFDLDAMIQGSAAIRKRIEEINAKGLNATAKEKSLLTVLEVA 1341

Query: 804  -KFCQDARQF-NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
             + C+    F NI +      +   +F +  N +     AI G+GT  A +I+ A  +  
Sbjct: 1342 LEMCERGFSFKNIDLY----RSQATEFVIDGNSLIPPFNAIPGLGTNVALNIVRAREEGE 1397

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            F S ED   R    KL++ ++E L   G LD  
Sbjct: 1398 FLSKEDLQQR---GKLSKTLIEYLESRGCLDSL 1427


>gi|292669878|ref|ZP_06603304.1| DNA polymerase III, alpha subunit [Selenomonas noxia ATCC 43541]
 gi|292648675|gb|EFF66647.1| DNA polymerase III, alpha subunit [Selenomonas noxia ATCC 43541]
          Length = 1258

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 188/874 (21%), Positives = 331/874 (37%), Gaps = 182/874 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  H+  S L+  +    +++  A    PA+AITD + +  A   +     A  +  +
Sbjct: 343  VELHAHTKMSALDAVVPPKMLVETAARWGWPAVAITD-HGVVQAFPEAMNTARALKKKGV 401

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS----RMYLLDQGKQ 127
              ++   M+  L  ++     +     I+ L     G   L +LVS    R +   + + 
Sbjct: 402  DIKVIYGMEGYLVDSSDDARAY----HIIFLAKNKTGLYNLYKLVSLSHIRYFRGTKKRG 457

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-------GD 180
              R+  + L++   EG+I+ +   +G + R           + +  F            D
Sbjct: 458  RPRVPRAVLEQY-REGIIVGSACEAGELIRGIVAGRPDEELEEIAKFYDFLEIQPIHNND 516

Query: 181  RLYVN--LQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             L ++     H   D R    +V  LA     PL+AT +  FL+ ED   +  ++  A+ 
Sbjct: 517  FLKIDDRFPIHTDEDLRDINRKVDALAKKLNKPLIATCDVHFLNPED-AVYRAMLQKANG 575

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRF 295
               +++  P      YL+   EM++ F  L    A E  V   RR +  ++   PI    
Sbjct: 576  YRDAERQPPL-----YLRTTDEMLAEFDYLGAERAYECVVANPRRIADEVEHFLPI---- 626

Query: 296  IEKECDDIQKEEENELRNKAVAGL--EVRLAQGAIAKGYHAQDYRQ----RLDFELNVIA 349
                         +EL    V G   E++    A A+  + ++  Q    RL+ EL  I 
Sbjct: 627  ------------PDELYAPTVPGADREIQEMSYARARKLYGENLPQIVADRLELELKPIL 674

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------- 398
            R  FS  ++I    ++ +  +   VG  RGS   S  A  + +T+++PL           
Sbjct: 675  RHGFSALYIIAQRLVKKSNDDGYLVG-SRGSVGSSFVATMIGVTEVNPLPPHYRCRHCQY 733

Query: 399  -RF-----------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             +F                             ++ F  FL  D   +PD D++F  D + 
Sbjct: 734  NKFIDDGSVGSGFDLPPMDCPVCGTPLTKDGHNIPFAVFLGFDGDKVPDIDLNFSGDYQP 793

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
               +Y +  +G   V +  T   LQ K A    G A+     Q                 
Sbjct: 794  VAHKYTEVLFGKMNVFRAGTISGLQDKNAY---GYAMHYYEEQ----------------- 833

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMY 546
                  +++ R      P ++ ++   +   G+      HA GI++  R +      P+ 
Sbjct: 834  -----GETKGR------PYIEHMM---RGCMGVKATTGQHAGGIMVVPRNMDVHYFTPIQ 879

Query: 547  R---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            R   ++ SD   T F+   I +  L+K D LG    T++ K L+ L  R    D   IPF
Sbjct: 880  RPANNMESDTLTTHFDYHSISER-LVKLDILGHDDPTVI-KMLEELTHR----DPETIPF 933

Query: 604  DDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            DD  T  + T+               GT GI +  +S  ++ ++   PDC  D++  +S 
Sbjct: 934  DDPATMSIFTSTEALGIRPEELGANMGTYGIPEFRTSFTQKMIDDSNPDCFADLVR-ISG 992

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            +  G   N+ +     N ++ I +    +   +     ++ Y  Q  +I  LLS      
Sbjct: 993  FSHG--TNVWL----GNAQDLIKAGTSTLKDAISARDDIMNYLMQ-NRIDPLLS------ 1039

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD---YGFNKSHA 766
                      K  E + K K     G + + + K  A  I E   +      Y F ++HA
Sbjct: 1040 ---------FKTMENVRKGK-----GIAPDVVEKLRAGGIPEWYIESCQKIKYLFPRAHA 1085

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             AY ++ Y+ A+ K HYP+ + AA  ++  D  +
Sbjct: 1086 TAYVMMGYRIAFCKVHYPLAYYAAYFSIRADEFD 1119


>gi|239617281|ref|YP_002940603.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239506112|gb|ACR79599.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 1430

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 191/894 (21%), Positives = 329/894 (36%), Gaps = 200/894 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            + +L     G + L ELV+  +     K+  RI  S L E   EGLI+ +   SG + +A
Sbjct: 609  VTILAKNKTGLRNLYELVTLSHTKYFYKKP-RIPKSILLE-KREGLIIGSACISGELSKA 666

Query: 159  FF--FNSSQVAE-KRLLTFKKLFG-DRLYVN-----LQRHRGYDRYRESQVVQLAYTHEL 209
            +    N++++ E  +   F ++   D L  N     + R    + YRE    ++     +
Sbjct: 667  YLSGANAAELEEIAKFFDFIEIMPLDVLDYNEAEAHITRENLKNMYRE--FYRIGKKLNI 724

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS----IFS 265
            P+V T +  FL  ED     VL A        ++      P  YL+   EM+     IF 
Sbjct: 725  PVVMTGDVHFLEPEDAIYRAVLEAAQEYQNFDKQ------PSLYLRTTEEMLEAAKEIFE 778

Query: 266  DLPEALENTVEIARRCSFILQVHAPIL----PRFIEKECDDIQKEEENELRNKAVAGLEV 321
            D   A E  V+ +R+ + +++  API     P  IE        E+  EL  K       
Sbjct: 779  DEEIAYEVVVKNSRKIALMVENIAPIRGKLHPPIIEG-----ADEQVRELTYKTAH---- 829

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                  I      +   +RL+ EL  I    ++  +LI    ++ + ++   VG  RGS 
Sbjct: 830  -----EIYGDPLPEIVEKRLEKELRAIIGHGYAVLYLIAQKIVRKSNEDGYVVG-SRGSV 883

Query: 382  AGSVTAYALTITDIDPL------------RFSL--------------------------- 402
              S+ A  L IT+++PL             F L                           
Sbjct: 884  GSSLVATMLGITEVNPLPPHYVCPACKHSEFVLDGSVESGYDLKDKSCPECGALMQKNGQ 943

Query: 403  --LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
               FE FL  +   +PD D++F  + ++    Y++  +G + V +  T  +L  + A   
Sbjct: 944  NIPFETFLGFEGDKVPDIDLNFSGEYQERAHAYLEKLFGKDHVFRAGTISTLAERTAYGF 1003

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V   ++    Q+ R                                 +DRL   +  + G
Sbjct: 1004 VKAYMERSKKQLRR-------------------------------AEIDRL---ASGIVG 1029

Query: 521  LYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + +    H  G++I   DR + +  P+     D +S    T F  + I    L+K D LG
Sbjct: 1030 VRKTTGQHPGGLMIVPKDRDVHEFTPVQFPANDTKSRTMTTHFAYEVIHD-DLVKIDALG 1088

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIF 621
                T ++   D        VD + +P DD +T  + ++               GTLGI 
Sbjct: 1089 HDDPTFIRMLKDITG-----VDPTTVPMDDKDTLSIFSSTKVLGINPRDLGTDVGTLGIP 1143

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            +  +  +R  L   +P    +++ +  L          V+ N  N ++ IVS    +   
Sbjct: 1144 EFGTQFVRGMLRETRPKTFGELVRISGLSH-----GTDVWLN--NARDWIVSKKATL--- 1193

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
                  VI  ++ +M        Y +S+     +A   KI E++ K K   I+      +
Sbjct: 1194 ----SDVIACRDDIMN-------YLISKGIEPLKAF--KIMEKVRKGKG--ITDEEVEMM 1238

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD---- 797
             +      F    +   Y F K+HA AY  + Y+ A+ K HYP+ F +   T++ D    
Sbjct: 1239 QEAEVPEWFIESCRRIKYLFPKAHAVAYVSMGYRVAYFKVHYPLAFYSTYFTIKGDEFDV 1298

Query: 798  -----NVEKIKK-----------------------FCQDARQFNIQIMPPSV-NTPCVDF 828
                 +V  I+K                          + R      +P  +  +    F
Sbjct: 1299 DLALGDVSGIRKEITNLKNNANKNVKERSKETLLEIVLEMRLRGYSFLPVDLEKSDARRF 1358

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
             +  N +      +K +G   A  I++    +PF S+ED   R    K +  +L
Sbjct: 1359 LIEGNALRIPFNRLKNLGYKVAISIIKEREKRPFSSVEDLLKRTSINKTHVEIL 1412


>gi|228922572|ref|ZP_04085872.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            huazhongensis BGSC 4BD1]
 gi|228837001|gb|EEM82342.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            huazhongensis BGSC 4BD1]
          Length = 1433

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 200/922 (21%), Positives = 341/922 (36%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 782  EDKAKEVVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822  TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 881  SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPACNIPY 940

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 941  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEK 1000

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1001 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1026

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1027 AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQYPADSIGAEWRTTHFDFHS 1078

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        +D   IP DD E   + +         
Sbjct: 1079 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTE 1132

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1133 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1193 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1235

Query: 725  M-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
              D  K   + G   +   K               Y F K+HAAAY +++ + A+ K H+
Sbjct: 1236 WEDDMKSNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------ 822
             + F AA  T+  D  +VE + K     R       Q  +   P   +            
Sbjct: 1283 ALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   DF +  + +     A+ G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    K+++ ++E L   G L
Sbjct: 1403 QR---SKVSKTIIEYLDSQGCL 1421


>gi|227872420|ref|ZP_03990765.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
 gi|227841738|gb|EEJ52023.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
          Length = 720

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 155/760 (20%), Positives = 274/760 (36%), Gaps = 166/760 (21%)

Query: 210 PLVATNNSLFLSEEDYEAHDVL--MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
           P+ AT ++ +  EE+    DVL  + +A   +  ++   R+    + ++ +EM+  FS L
Sbjct: 8   PVCATCDAHYADEEN----DVLRRIVLATKGMTDEEGEARL----FFRSTTEMLEEFSYL 59

Query: 268 PE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                    ++N ++I + C  I  V     P  IE   D+  ++   E  +K       
Sbjct: 60  DSNTQKQVVIDNPLKIMKMCEPIKPVRPDKCPPIIEHS-DETLRQICYETAHKIYGPKLP 118

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
            + +              RL+ ELN I    +S  ++I    +  + ++   VG  RGS 
Sbjct: 119 EMVE-------------NRLETELNSIISNGYSVMYIIAQKLVDKSNEDGYLVG-SRGSV 164

Query: 382 AGSVTAYALTITDIDPL------------------------------------------- 398
             S  A    IT+++PL                                           
Sbjct: 165 GSSFAATMAHITEVNPLPPHYVCPNCYYTDFDSEEVKSYSGMAGYDMPSKNCPHCGTVLN 224

Query: 399 --RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
              F + FE FL  D    PD D++F  + +     Y    +G E   +  T G+L  K 
Sbjct: 225 RLGFDIPFETFLGFDGDKEPDIDLNFSGEYQARAHAYTGAIFGEENTYKAGTIGTLAEKT 284

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
           A           Y  +                        +F E R        L  +  
Sbjct: 285 A-----------YGMI-----------------------KKFYEERGEKKRTAELNRLVA 310

Query: 517 KLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKF 571
            + G+ R    H  GIV+      ++   P+     D  S +  T F+   I+   L+K 
Sbjct: 311 GITGIRRTTGQHPGGIVVLPHGEDINTFTPVQHPANDTESPIITTHFDYHKIDH-NLLKL 369

Query: 572 DFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
           D LG    T+++K  D      VK     IP D  E   L  +   LGI   +  G+   
Sbjct: 370 DILGHDDPTMIRKLQDLTGLDPVKD----IPLDSPEVMSLFQSTEALGISPADIQGVELG 425

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVII 690
             G+     +  + +V   +P  + +++  +   +G +  ++    LI   +   +  I 
Sbjct: 426 CLGIPEFGTQFAMQMVQDTKPKYLSDLIRISGLSHGTDVYLNNAQDLILSGVTTLREAIC 485

Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            ++ +M +  +  G    E+  +  A  +K K   D+  E  +    ++G+ +      +
Sbjct: 486 CRDDIM-VYLMHMGLEPGESFNIMEAT-RKHKPLKDEWCEHML----EHGVPQ-----WY 534

Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD---------NVEK 801
               K   Y F K+HAAAY +++Y+ A+ K  YP E+  A  T+  D          VEK
Sbjct: 535 IDACKKIKYMFPKAHAAAYVMMAYRVAYCKVFYPKEYYTAYYTVRADGFDFDKMCFGVEK 594

Query: 802 IK-----------------------KFCQDARQFNIQIMPPSV-NTPCVDFKVGD-NRIY 836
           ++                       K C++     IQ  P  +      DF++ +   I 
Sbjct: 595 LRFHIKEYSAREKLSATDQLCLRDMKICEEMYARGIQFAPLDIYKAKAKDFQITEKGEIM 654

Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            S + I G+G   A+ + E +    + S +DF  R    K
Sbjct: 655 PSFSCIAGLGEAVAQGLEEGAKYGKYLSKDDFIQRTHCPK 694


>gi|312985346|gb|ADR30816.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|312985348|gb|ADR30817.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 110/241 (45%), Gaps = 29/241 (12%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +  +  N      + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLNYDSKNA-----YLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY     IKG+       I+ E ++   F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGVIYVGFGKIKGLNRKVIDEIVKERNSHGLFSGLTDFLQRMAGSDIGESDIVQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKF 943
            L +AG+LD FGY+R +L                 +TN    I A E  G+   +  +   
Sbjct: 116  LTYAGSLDHFGYNRQEL-----------------KTNAASLITAMEFGGSLLSETKISAI 158

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVV 1002
               +   R  +E+ VLGF  SGHP+D  +  + K   KGY + +  ++ + I ++A M+ 
Sbjct: 159  GEMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVK---KGYTQ-INDLKADQIVKMAVMID 214

Query: 1003 S 1003
            S
Sbjct: 215  S 215


>gi|329667117|gb|AEB93065.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii DPC 6026]
          Length = 1432

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 161/775 (20%), Positives = 296/775 (38%), Gaps = 169/775 (21%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT++S ++   +     +L+A          +R +  PD +  +  EM+  FS L E
Sbjct: 724  PVVATSDSHYVEPHEAIYRKILLAAQKGN----SNRNKNLPDLHFYSTQEMLDAFSFLGE 779

Query: 270  ------ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAVAGLE 320
                   ++NT ++A +   I  + + + P  IE   +E  D+   +  EL  K +  + 
Sbjct: 780  DVAKEIVIDNTNKLADQIEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKI- 838

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                               R++ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 839  ----------------VEDRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 881

Query: 381  GAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFC-----QDR 426
               S+ A    IT+++PL         ++S  FE         +PD +   C     +D 
Sbjct: 882  VGSSLVATMSGITEVNPLAPHYRCPNCKYSKFFENGEYGSGYDLPDKECPKCGTPLVKDG 941

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +D         +G ++V  I    S   +    +  R +              P++    
Sbjct: 942  QDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNYIRVM------------FGPDNSFRA 988

Query: 487  VSLQAIADDSRF---------REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--G 535
             ++  +AD + +          E  L +  +DRL   +    G+ R    H AGIV+   
Sbjct: 989  GTIATVADKTAYGYVKHYEDENELHLRNAELDRL---AAGASGVKRTTGQHPAGIVVVPD 1045

Query: 536  DRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            D  +    P+     D+ +    T F+   I    ++KFD LG    T+++     + Q 
Sbjct: 1046 DMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHD-NILKFDILGHDDPTMIR-----MLQD 1099

Query: 593  GVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPD 638
               VD   IP DD     L ++               GTLG+ +  +  +R  LE  +P 
Sbjct: 1100 LSGVDPLTIPPDDPGVMSLFSSPEILGVTPEQIQSKTGTLGVPEFGTKFVRGMLEETKPT 1159

Query: 639  CIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
               +++ +  L        G  ++++      NG  K+ ++    D ++ +     +  E
Sbjct: 1160 TFSELLQISGLSHGTDVWLGNAEDLI-----NNGTCKLKNVIGCRDNIMMDLIHWGVKPE 1214

Query: 694  -QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
                 +  +  G  +S+ ++       +I ++ DK  + +I    K              
Sbjct: 1215 VAFFTMESVRHGRGISDENM-------EILKKNDKIPDWYIPSCLK-------------- 1253

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD------------NVE 800
                  Y F K+HA AY +++ + AW K +YPV + A+  ++  D             V+
Sbjct: 1254 ----IKYMFPKAHATAYILMALRIAWFKVYYPVIYYASYFSVRADLFDLVAMSHGKNTVK 1309

Query: 801  KIKKFCQD---------------------ARQFNIQIMPPSVN-TPCVDFK-VGDNRIYY 837
               K  QD                       +  I+I    VN +   DFK + D+ I  
Sbjct: 1310 AAMKEIQDKGMDVSAKDKSLLTVLEIANECLERGIKIKMVDVNESEATDFKIIDDHTILA 1369

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               A+ G+G   A+ I+ A A++ F S ED  +R    K+++ ++E     G L+
Sbjct: 1370 PFNAVPGLGDNAAKQIVAARAEQKFLSKEDLATR---GKVSQTIMEYFENNGVLE 1421


>gi|327441015|dbj|BAK17380.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046]
          Length = 1443

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 208/971 (21%), Positives = 365/971 (37%), Gaps = 245/971 (25%)

Query: 49   TNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
            T  LF  L   ++A   GI+ +I      +M D++      K   P+    VL V  A G
Sbjct: 580  TGELF--LHLLKQAADLGIKNLI------EMNDHVGGEEGYKQSRPS-HCTVLAVDDA-G 629

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
             + L +L+S  +  +   +  RI  S LQ++  +GLI+ +G S+G +       + + AE
Sbjct: 630  LKNLFKLISISHT-ETFYRVPRIRRSDLQKL-RQGLIVGSGCSNGELFETMMNKTQEEAE 687

Query: 169  K--RLLTFKKLFGDRLYVNL-QRHRGYDRYRES----QVVQLAYTHELPLVATNNSLFLS 221
            +  +   + ++    +Y  L      +D +       ++V+L     LP+VAT N  +L 
Sbjct: 688  RIAKFYDYLEVMPKPVYSPLVDGGTVHDEWALEDIIRRIVKLGKKLNLPVVATGNVHYLH 747

Query: 222  EEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL-PE-ALENTVEIA 278
            E D +   +L+ ++  +  +++   P+V    + +   EM+  F  L P+ A E  V   
Sbjct: 748  ETDAKFRQILVGSMGGANPLNRNPLPKV----HFRTTDEMLKEFDFLGPDLAKEIVVTNT 803

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
            +R + ++    PI         DD+   +  E  +  V  L   +A     +    +  +
Sbjct: 804  QRVADMIGHVKPI--------KDDLYTPK-IEGSDDEVTNLTYEMAHSIYGENL-PEIVQ 853

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             R+D EL  I    F   +LI A  ++ +  +   VG  RGS   S+ A  + IT+++PL
Sbjct: 854  ARIDKELKSILGHGFGVIYLISAKLVKKSLADGYLVG-SRGSVGSSLVATFMEITEVNPL 912

Query: 399  ------------RF-----------------------------SLLFERFLNPDRMSMPD 417
                         F                              + FE FL      +PD
Sbjct: 913  PPHYVCPNCKHSEFIADGSVASGYDLPNKQCPECGAPFKKDGQDIPFETFLGFKGDKVPD 972

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  + + +   Y +  +G + V +  T G++  K A           Y  V     
Sbjct: 973  IDLNFSGEYQPQAHNYTKVLFGEDYVFRAGTIGTVAEKTA-----------YGYV----- 1016

Query: 478  LIPNDPAHPVSLQAIADDS--RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                        +    D+   +R A      VDRL+   Q   G+ R    H  GI++ 
Sbjct: 1017 ------------KGYGSDNGITYRNAE-----VDRLV---QGCTGVKRTTGQHPGGIIV- 1055

Query: 536  DRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLL 582
                   VP Y D+    PV             T F+   I    ++K D LG    T++
Sbjct: 1056 -------VPDYMDIYDFSPVQFPADAQDSEWKTTHFDFHSIHD-NILKLDILGHDDPTVI 1107

Query: 583  QKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGM 628
            +   D        +D   IP DD     +               T  GTLGI +  +  +
Sbjct: 1108 RMLQDLSG-----IDPKTIPTDDPIVMKIFSSTESLGVTEKQIGTKTGTLGIPEFGTKFV 1162

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            RQ LE  +P    +++ +  L       ++ + N ++  K+           +LKE  G 
Sbjct: 1163 RQMLEETKPSTFSELVQISGLSHG---TDVWLGNAQELIKDGTC--------VLKEVIGC 1211

Query: 689  -------IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD------KQKERFISG 735
                   +IYQ+       L   ++    + +R+  GK + +EM+      K  E +I  
Sbjct: 1212 RDDIMVYLIYQD-------LEPSFAFKIMESVRK--GKGLTDEMEAEMRAKKVPEWYIDS 1262

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              K                    Y F K+HAAAY +++ + AW K H+P+ + AA  T+ 
Sbjct: 1263 CKK------------------IKYMFPKAHAAAYVLMAVRIAWFKVHHPILYYAAYFTVR 1304

Query: 796  MDNVE---------KIKKFCQDARQFNIQIMPPSVNTPCV-------------------- 826
              + +          I+K   +     +   P   +   V                    
Sbjct: 1305 ASDFDLIAMTQGSVMIRKKIDEINMKGLDAAPKEKSLLTVMELALEMCERGMSFKKVDLY 1364

Query: 827  -----DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                 +F +  N +     AI G+GT  A+ I+EA  +  F S ED   R    ++++ +
Sbjct: 1365 RSHASEFIIEGNSLIPPFDAIPGLGTNVAKQIVEARKNGEFLSKEDLQQR---GRVSKTL 1421

Query: 882  LESLVFAGALD 892
            +E +   G L+
Sbjct: 1422 IEYMDELGCLE 1432


>gi|224383932|gb|ACN42762.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|224383934|gb|ACN42763.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|312985338|gb|ADR30812.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 110/241 (45%), Gaps = 29/241 (12%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +  +  N      + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLNYDSKNA-----YLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY     IKG+       I+E  ++   F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGIIYVGFGKIKGLNRKVIDEIVEERNSHGLFSGLTDFLQRMAGSDIGESDIIQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKF 943
            L +AG+LD FGY+R +L                 +TN    I A E  G+   +  +   
Sbjct: 116  LTYAGSLDHFGYNRQEL-----------------KTNAASLITAMEFGGSLLSETKISAI 158

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVV 1002
               +   R  +E+ VLGF  SGHP+D  +  + K   KGY + +  ++ + I ++A M+ 
Sbjct: 159  GEMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVK---KGYTQ-INDLKADQIVKMAVMID 214

Query: 1003 S 1003
            S
Sbjct: 215  S 215


>gi|312985334|gb|ADR30810.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|312985336|gb|ADR30811.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 29/241 (12%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +  +  N      + Q+ +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLNYDTKN-----SYLQNIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY  L  IKG+       I+ E ++   F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGVIYVGLGKIKGLNRKVIDEIVKERNSHGLFSGLTDFLQRMAGSDIGESDIVQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKF 943
            L +AG+LD FGY+R +L                 +TN    I A E  G+   +  +   
Sbjct: 116  LTYAGSLDHFGYNRQEL-----------------KTNAASLITAMEFGGSLLSETKISAI 158

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVV 1002
               +   R  +E+ VLGF  SGHP+D  +  + K   KGY + +  ++ + I ++A M+ 
Sbjct: 159  GEMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVK---KGYTQ-INDLKADQIVKMAVMID 214

Query: 1003 S 1003
            S
Sbjct: 215  S 215


>gi|312985332|gb|ADR30809.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 110/241 (45%), Gaps = 29/241 (12%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +  +  N      + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLNYDSKNA-----YLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY     IKG+       I+E  ++   F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGFIYVGFGKIKGLNRKVIDEIVEERNSHGLFSGLTDFLQRMAGSDIGESDIIQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKF 943
            L +AG+LD FGY+R +L                 +TN    I A E  G+   +  +   
Sbjct: 116  LTYAGSLDHFGYNRQEL-----------------KTNAASLITAMEFGGSLLSETKISAI 158

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVV 1002
               +   R  +E+ VLGF  SGHP+D  +  + K   KGY + +  ++ + I ++A M+ 
Sbjct: 159  GEMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVK---KGYTQ-INDLKADQIVKMAVMID 214

Query: 1003 S 1003
            S
Sbjct: 215  S 215


>gi|228992546|ref|ZP_04152473.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
 gi|228767180|gb|EEM15816.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
          Length = 1433

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 197/922 (21%), Positives = 343/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
             P+VAT N  +L  ED     +L++    +  +++   P V    Y +  +EM+  FS L
Sbjct: 725  KPVVATGNVHYLDPEDAMYRKILVSSQGGANPLNRHSLPPV----YFRTTNEMLDCFSFL 780

Query: 268  PE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL-- 319
             E       + NT ++A   S I  VH P+                +++L    + G   
Sbjct: 781  GEEKAKEIVVTNTQKVA---SLIGDVH-PV----------------KDDLYTPKIEGADD 820

Query: 320  EVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
            E R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG
Sbjct: 821  ETRDMSYTMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG 880

Query: 376  PGRGSGAGSVTAYALTITDIDPL------------------------------------- 398
              RGS   S  A  + IT+++PL                                     
Sbjct: 881  -SRGSVGSSFVATMMEITEVNPLPPHYVCPNCKQSEFFNDGSVGSGFDLPDKECPTCNIP 939

Query: 399  ----RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  
Sbjct: 940  YVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAE 999

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A           Y  V                 +  A D       + +  +DRL+  
Sbjct: 1000 KTA-----------YGYV-----------------KGYASDHNL---TIRNAEIDRLV-- 1026

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
                 G+ R    H  GI++        VP Y D+    P+             T F+  
Sbjct: 1027 -AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQFPADSVGAEWRTTHFDFH 1077

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT-------- 613
             I    L+K D LG    T+++   D        VD   IP DD E   + +        
Sbjct: 1078 SIHD-NLLKLDILGHDDPTVIRMLQDLSG-----VDPKTIPTDDPEVMKIFSGPESLGVT 1131

Query: 614  ------TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNN 663
                    GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN 
Sbjct: 1132 EEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNG 1191

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
                 E I       D M+      +IYQ     +A     + + E+  +R+  GK + E
Sbjct: 1192 TCTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPE 1234

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            E +++         +N    +  ++      K   Y F K+HAAAY +++ + A+ K H+
Sbjct: 1235 EWEEEM--------RNNNVPSWYIDS----CKKIKYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVN------------ 822
             + F AA  T+  D+ +          I+    +  Q  +   P   +            
Sbjct: 1283 ALLFYAAYFTVRADDFDVDAMVKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   DF +  + +     AI G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATDFIIDGDTLIPPFNAIPGLGTNAALSIVEARGNGEFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    KL+R ++E L   G L
Sbjct: 1403 QR---SKLSRTIIEYLDSQGCL 1421


>gi|149183493|ref|ZP_01861922.1| DNA polymerase III PolC [Bacillus sp. SG-1]
 gi|148848805|gb|EDL63026.1| DNA polymerase III PolC [Bacillus sp. SG-1]
          Length = 1375

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 169/792 (21%), Positives = 304/792 (38%), Gaps = 187/792 (23%)

Query: 97   PS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + LL  T EG + L +LV+  +L +   +  RI  S LQ+  + G+++ +G   G +
Sbjct: 614  PSHVTLLAQTEEGLKNLFKLVTISHL-EYFFRVPRIPRSLLQKYRS-GILVGSGCDKGEV 671

Query: 156  DRAFFFNSSQVAEK--RLLTFKKLFGDRLY---VNLQRHRGYDRYRE--SQVVQLAYTHE 208
                   + +  E+  R   + ++    +Y   + L+  +      E    +VQL    +
Sbjct: 672  FEGMMQKAPEEVEEAARFYDYLEVHPKEVYQHLIELELIQSDQNLEEIIGNIVQLGEKLD 731

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL- 267
            LP+VAT N  +++  D    ++L  V      +  +R ++ PD + +  +EM+  FS L 
Sbjct: 732  LPVVATGNVHYINPTDKVHREIL--VGSQGGANPLNRHKL-PDVHFRTTNEMLDCFSFLG 788

Query: 268  -PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--EVRLA 324
              +A E  V    + + ++    PI                +++L    + G   E+R  
Sbjct: 789  KEKAKEIVVTNTNKIADLIDEIKPI----------------KDDLYTPKIEGADEEMRRM 832

Query: 325  QGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
              A+AK  + ++  +    RL+ EL  I    F+  +LI A  ++ +  +   VG  RGS
Sbjct: 833  SYAMAKSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISAKLVKKSLSDGYLVG-SRGS 891

Query: 381  GAGSVTAYALTITDIDPL-----------------------------------------R 399
               S  A    IT+++PL                                          
Sbjct: 892  VGSSFVATMTEITEVNPLPPHYVCPKCKHSEFFDDGSVGSGFDLPNKNCPECGNVFKKDG 951

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL      +PD D++F  + + +   Y +  +G + V +  T G++  K A  
Sbjct: 952  HDIPFETFLGFKGDKVPDIDLNFSGEYQPKAHDYTKVLFGEDNVYRAGTIGTVADKTAFG 1011

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V                            +  A D+     ++    VDRL   +Q   
Sbjct: 1012 YV----------------------------KGYASDNNL---QIRGAEVDRL---AQGCT 1037

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDV-------------RSDLPVTQFNMKWIEKA 566
            G+ R    H  GI++        VP Y D+              S+   T F+   I   
Sbjct: 1038 GVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQFPADDKNSEWKTTHFDFHSIHD- 1088

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY--------------HLL 612
             L+K D LG    T+++   D        +D   IP DD E                 ++
Sbjct: 1089 NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGTESLGVTEEQIM 1143

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNRKNGK 668
               GTLGI +  +  +RQ LE  +P    +++ +  L     +       +++NN  N  
Sbjct: 1144 CKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHGTDVWLGNAQELIHNNICNLS 1203

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E I       D M+      +IYQ        L    +    + +R+  GK ++ E +++
Sbjct: 1204 EVIGCRD---DIMV-----YLIYQ-------GLEPSLAFKIMEFVRK--GKGLQPEWEEE 1246

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
                     KNG+      N +    K   Y F K+HAAAY +++ + A+ K H+ + + 
Sbjct: 1247 -------MMKNGVP-----NWYIDSCKKIKYMFPKAHAAAYVLMAVRIAYFKVHHALLYY 1294

Query: 789  AASMTLEMDNVE 800
            +A  T+  ++ +
Sbjct: 1295 SAYFTVRAEDFD 1306


>gi|217961238|ref|YP_002339806.1| DNA polymerase III PolC [Bacillus cereus AH187]
 gi|229140459|ref|ZP_04269014.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
 gi|229197928|ref|ZP_04324644.1| DNA polymerase III polC-type [Bacillus cereus m1293]
 gi|217065194|gb|ACJ79444.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus AH187]
 gi|228585646|gb|EEK43748.1| DNA polymerase III polC-type [Bacillus cereus m1293]
 gi|228643020|gb|EEK99296.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
          Length = 1433

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 199/922 (21%), Positives = 343/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L+ ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLNPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 782  EDVAKEIVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822  TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 881  SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPTCNIPY 940

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 941  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEK 1000

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1001 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1026

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1027 AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQYPADSIGAEWRTTHFDFHS 1078

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        +D   IP DD E   + +         
Sbjct: 1079 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTE 1132

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1133 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1193 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1235

Query: 725  MDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  K   + G   +   K               Y F K+HAAAY +++ + A+ K H+
Sbjct: 1236 WEEDMKSNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------ 822
             + F AA  T+  D  +VE + K     R       Q  +   P   +            
Sbjct: 1283 ALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   DF +  + +     A+ G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGEFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    K+++ ++E L   G L
Sbjct: 1403 QR---SKVSKTIIEYLDSQGCL 1421


>gi|41019060|gb|AAR98502.1| DNA polymerase III alpha subunit [Pasteuria penetrans]
          Length = 199

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 10/152 (6%)

Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
           +L +P    L    Q   GL R   TH AG++I  R L +  P+     +   + Q++M 
Sbjct: 34  QLEEPVYTTLRTFLQHWVGLPRQVVTHPAGVIITSRSLVEQFPLEVGTHAMWRI-QYDMH 92

Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            + K G +K D LGL+ L +L       + R V+   S IP  D  TY LL    T+G+F
Sbjct: 93  VLRKLGFLKLDILGLRHLAILD------SIRSVQ---SHIPDGDAATYQLLARGDTVGLF 143

Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
           Q+ES GMR+ L  ++P  ++D++ +++L+RPG
Sbjct: 144 QVESPGMRRLLRTIRPTRLDDLMDILALHRPG 175


>gi|323701859|ref|ZP_08113529.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
            574]
 gi|323533163|gb|EGB23032.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
            574]
          Length = 1421

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 187/904 (20%), Positives = 340/904 (37%), Gaps = 203/904 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            + +LV    G + L +L+S  +L    +Q  RI    L +   EGL++ +   +G I +A
Sbjct: 600  VTILVKDQVGLKNLYQLISLSHLKYYHRQP-RIPRHELIKY-REGLLVGSACEAGEIFQA 657

Query: 159  FFFNSSQVAEKRLLTFKKLF-----GDRLYVNLQRHRGYD---RYRESQVVQLAYTHELP 210
                 SQ   + +  F         G+  ++      G     +    +++ +     +P
Sbjct: 658  LLSGCSQEELEEMAAFYDFLEIQPLGNNEFLLRSGQVGSQEDLKNLNRRIIDIGNKLGIP 717

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
            +VAT +  FL+ ED     +LMA          D     P  Y K   EM+  FS L EA
Sbjct: 718  VVATGDVHFLNPEDEIYRRILMAGK-----GFDDADNQAP-LYFKTTDEMLEEFSYLGEA 771

Query: 271  LENTVEIA--RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
                V I   R  + ++Q   PI                 +EL    + G E ++ +  +
Sbjct: 772  TARQVVITNPRMIADMVQTFKPI----------------PDELHPPIIEGAEQQITEMTL 815

Query: 329  AKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
             +          +  +QR+D EL  I    F+  +LI    ++ +  +   VG  RGS  
Sbjct: 816  RRARELYGNPLPEIVQQRIDKELKSIIGNGFAVLYLIAQKLVKKSLDDGYLVG-SRGSVG 874

Query: 383  GSVTAYALTITDIDPL---------RFS-------------------------------- 401
             S+ A    IT+++ L         R S                                
Sbjct: 875  SSLVANFCGITEVNSLPPHYRCPKCRHSEFVTDGSAGCGADMPDKVCPQCGTKYVKDGHD 934

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL  +   +PD D++F  + +    ++++  +G + V +  T G++  K A   V
Sbjct: 935  IPFEVFLGFEGDKVPDIDLNFSGEYQPRAHKFIEELFGKDHVFRAGTIGTIAEKTAFGFV 994

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
                                                + E R        L  +     G+
Sbjct: 995  ----------------------------------KNYFEERNIKKRNAELTRLVLGCAGV 1020

Query: 522  YRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             R    H  G+++   +  +    P+ R   DV SD   T F+   I  + L+K D LG 
Sbjct: 1021 KRTTGQHPGGLMVVPSNLDVHMFTPVQRPADDVNSDTITTHFDYHSIHDS-LVKLDILGH 1079

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQ 622
               T+++   D        V+   IP DD +T  L ++               GT  I +
Sbjct: 1080 DDPTVIRMLEDLTG-----VNAREIPLDDPKTMSLFSSTEALGVTPEEIRSQVGTYAIPE 1134

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
              +  +RQ L   +P    +++  +S +  G      V+ N  N ++ I S    +   +
Sbjct: 1135 FGTKFVRQMLVDTKPTTFSELVR-ISGFSHG----TDVWLN--NAQDLIRSGTCKLSEAI 1187

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
                 +++Y    +    L    +    + +R+  GK +KEE D +  R       +G+ 
Sbjct: 1188 SARDDIMVY----LIYKNLPPKQAFKIMEGVRK--GKGVKEE-DAEAMR------AHGVP 1234

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN---- 798
            +    +  ++      Y F K+HA AY +++++ AW K + P  F AA  T+  D+    
Sbjct: 1235 EWYIESCRKI-----KYMFPKAHATAYVMMAFRIAWFKVYRPEAFYAAYFTVRADDFDAE 1289

Query: 799  ------------VEKIKK--------------FCQDARQFN---IQIMPPSVNTPCVD-F 828
                        +E I++                + A + N   I+++P ++     + F
Sbjct: 1290 LMVQGPQKLRQTIEAIEEKGNAASTKEKNLLTILEVALEMNCRGIKLLPVNLEKSDANKF 1349

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             +  + +    A ++GVG   A++I+ A  + PF S+ED  +R    K+++ V+E L   
Sbjct: 1350 LITPDGLLSPFAGLQGVGRAAAQNIVLARENSPFTSVEDLRNRA---KISKTVIEVLKNH 1406

Query: 889  GALD 892
            G L+
Sbjct: 1407 GCLN 1410


>gi|104774216|ref|YP_619196.1| DNA polymerase III, alpha subunit ( type) (PolC) [Lactobacillus
            delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103423297|emb|CAI98138.1| DNA polymerase III, alpha subunit (gram-positive type) (PolC)
            [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 1411

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 171/800 (21%), Positives = 299/800 (37%), Gaps = 204/800 (25%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT+++ ++ + +    DVL+A          +R +  PD +     EM+  FS + E
Sbjct: 701  PVVATSDAHYIDKHEAIYRDVLLAAQRGN----PNRNKQHPDLHFYTTQEMLDEFSFMGE 756

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
             +   V I+              P  I    D+  +  ++E     +     R+ +    
Sbjct: 757  DIAKEVVISN-------------PNKINAMIDEGVQPVQDESFPPKIPHTAERVRKLTYD 803

Query: 330  KGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
            K +         + + RLD EL+ I    +   +LI    +  + K+   VG  RGS   
Sbjct: 804  KAHELYGDPLPDNIQARLDRELDAIIGNGYGVVYLISQMLVAKSVKDGYLVG-SRGSVGS 862

Query: 384  SVTAYALTITDIDPL------------RF-----------------------------SL 402
            S+ A  + IT+I+P+             F                             ++
Sbjct: 863  SLVATMMGITEINPMPPHYRCPKCKQSEFFENGEYASGFDLPDKKCPDCQVMMVKDGQNI 922

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL      +PD D++F  D +     +++  +G     +  T G+L  K A+  V 
Sbjct: 923  PFETFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPNHSFKAGTVGTLADKKAIGYVK 982

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                                  HP             E ++ +  VDRL   +  + G+ 
Sbjct: 983  HYQD-----------------EHP-------------EIKMNNAEVDRL---AIGVTGVK 1009

Query: 523  RHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
                 H AGIV+   D+ + +L P+     D+  +   T F+   I    L+KFD LG +
Sbjct: 1010 ATTGQHPAGIVVLPDDKDIYELTPLQYPSDDISKEWKTTHFDFHQIHD-NLLKFDILGHQ 1068

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQL 623
              T+++   D        +D   IP DD +   L ++               GTLG+ + 
Sbjct: 1069 DPTMIRMLQDLSG-----IDPLTIPTDDPKVMSLFSSPEALGVTPEQINSKTGTLGLPEF 1123

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLI 678
             +  +R  LE  +P    +++ +  L        G  + ++      NG  K+ ++    
Sbjct: 1124 GTPFVRGMLEETKPSTFAELLQISGLSHGTDVWLGNAEELI-----NNGTCKLKNVIGCR 1178

Query: 679  DPMLKET--QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE-MDKQKERFISG 735
            D ++ +    GV   +E+V          + S  + +R+  GK I +E M   KE     
Sbjct: 1179 DNIMTDLIRWGV---KEEV----------AFSTMETVRK--GKGISDENMAVLKE----- 1218

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                  +K I         K   Y F K+HAAAY +++ + AW K +YP  + AA  ++ 
Sbjct: 1219 ------NKNIPDWYIPSCLKIK-YMFPKAHAAAYILMALRVAWFKVYYPEIYYAAYFSVR 1271

Query: 796  MDNVE--------------------------KIKKFCQDARQFNIQIMPPSVNTPCVD-- 827
             D V+                          K++K  Q   +   + +   +N   VD  
Sbjct: 1272 ADKVDLEAMSRGKNTVVALINRIKEKGTAATKLEKDLQTYMELVNEAIERGINFKMVDIN 1331

Query: 828  ------FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD-SKKL-- 877
                  +K+ D + I     A+ G+G + A+ I+ A ++ PF S ED   R   S+K+  
Sbjct: 1332 ESEATTYKIVDKHTILAPFNAVDGLGDSAAKQIVAARSEAPFLSKEDLQVRGKVSQKIMD 1391

Query: 878  ---NRRVLESLVFAGALDCF 894
               N  VLE +     L  F
Sbjct: 1392 FFENNNVLEGMPDQNQLSLF 1411


>gi|229006094|ref|ZP_04163782.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
 gi|228755170|gb|EEM04527.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
          Length = 1433

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 197/922 (21%), Positives = 343/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
             P+VAT N  +L  ED     +L++    +  +++   P V    Y +  +EM+  FS L
Sbjct: 725  KPVVATGNVHYLDPEDAMYRKILVSSQGGANPLNRHSLPPV----YFRTTNEMLDCFSFL 780

Query: 268  PE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL-- 319
             E       + NT ++A   S I  VH P+                +++L    + G   
Sbjct: 781  GEEKAKEIVVTNTQKVA---SLIGDVH-PV----------------KDDLYTPKIEGADD 820

Query: 320  EVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
            E R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG
Sbjct: 821  ETRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG 880

Query: 376  PGRGSGAGSVTAYALTITDIDPL------------------------------------- 398
              RGS   S  A  + IT+++PL                                     
Sbjct: 881  -SRGSVGSSFVATMMEITEVNPLPPHYVCPNCKQSEFFNDGSVGSGFDLPDKECPTCNIP 939

Query: 399  ----RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  
Sbjct: 940  YVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAE 999

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A           Y  V                 +  A D       + +  +DRL+  
Sbjct: 1000 KTA-----------YGYV-----------------KGYASDHNL---TIRNAEIDRLV-- 1026

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
                 G+ R    H  GI++        VP Y D+    P+             T F+  
Sbjct: 1027 -AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQFPADSVGAEWRTTHFDFH 1077

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT-------- 613
             I    L+K D LG    T+++   D        VD   IP DD E   + +        
Sbjct: 1078 SIHD-NLLKLDILGHDDPTVIRMLQDLSG-----VDPKTIPTDDPEVMKIFSGPESLGVT 1131

Query: 614  ------TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNN 663
                    GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN 
Sbjct: 1132 EEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNG 1191

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
                 E I       D M+      +IYQ     +A     + + E+  +R+  GK + E
Sbjct: 1192 TCTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPE 1234

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            E +++         +N    +  ++      K   Y F K+HAAAY +++ + A+ K H+
Sbjct: 1235 EWEEE--------MRNNNVPSWYIDS----CKKIKYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVN------------ 822
             + F AA  T+  D+ +          I+    +  Q  +   P   +            
Sbjct: 1283 ALLFYAAYFTVRADDFDVDAMVKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   DF +  + +     AI G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATDFIIDGDTLIPPFNAIPGLGTNAALSIVEARGNGEFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    KL+R ++E L   G L
Sbjct: 1403 QR---SKLSRTIIEYLDSQGCL 1421


>gi|256750786|ref|ZP_05491671.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
            CCSD1]
 gi|256750369|gb|EEU63388.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
            CCSD1]
          Length = 1407

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 195/910 (21%), Positives = 339/910 (37%), Gaps = 211/910 (23%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            V  + +LV   +G + L E++S+  L +   ++ R+  S L  +  EGLI+ +    G +
Sbjct: 583  VYHVTILVKDQKGLRNLYEIISKSNL-EYFHRTPRLPKSLLISM-REGLIIGSACEQGEV 640

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTH 207
             RA   N  +   + +++F      + +  +   +     +  +  RE   ++  L   +
Sbjct: 641  FRAIVSNLEEKKLENIISFYDYLEVQPVGNNEFLIEKGEVKSVEELREINRKIYLLGKKY 700

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
               +VAT +  FL   D     +LMA         KD  R  P  Y K   EM+  F  L
Sbjct: 701  NKLVVATGDVHFLDPWDDIYRKILMAGK-----GYKDADR-QPPLYFKTTDEMLKEFEYL 754

Query: 268  PE--ALENTVEIARRCSFILQVHAPI----LPRFIEKECDDIQKEEENELRNKAVAGLEV 321
             E  A E  ++   + + +++   PI     P  IE          E ELR         
Sbjct: 755  GEEVAKEIVIDNPNKIADLVEEVKPIPDGTFPPVIEGA--------EEELR--------- 797

Query: 322  RLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            RL      + Y     +  + RLD ELN I    ++  ++I    +  + K+   VG  R
Sbjct: 798  RLTLDKAHEIYGDPLPEIVQNRLDRELNSIINNGYAVMYIIAQKLVSKSLKDGYLVG-SR 856

Query: 379  GSGAGSVTAYALTITDIDPL---------------------------------------- 398
            GS   S+ A    IT+++PL                                        
Sbjct: 857  GSVGSSLVATMSGITEVNPLPPHYVCPNCKYSEFITDGSYGGGVDMPDKACPHCGTLMKK 916

Query: 399  -RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
              F + FE FL  +    PD D++F  + +    +Y +  +G   V +  T G+L  K A
Sbjct: 917  DGFDIPFEVFLGFEGDKEPDIDLNFSGEYQPIAHKYTEELFGKGHVFRAGTIGTLADKTA 976

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
               V +  +                                R   +    + RL   +  
Sbjct: 977  YGYVKKYFEE-------------------------------RNLIVHKSEIKRL---TVG 1002

Query: 518  LEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFD 572
              G+ R    H  GI++   D+ +    P+        +D+  T F+   I    L+K D
Sbjct: 1003 CTGVKRTTGQHPGGIMVVPKDKSIYDFTPIQHPADAEDTDVITTHFDYHSI-SGRLLKLD 1061

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTL 618
             LG    T+++   D        ++   IP DD +T  L T+               GTL
Sbjct: 1062 ILGHDDPTVIRMLEDLTG-----INAREIPLDDKKTMSLFTSVESLEIDPEELNTPVGTL 1116

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G+ +  +  +RQ L   +P    +++ +  L       ++ + N +   +E I +     
Sbjct: 1117 GLPEFGTKFVRQMLIDTRPTTFAELVRISGLSHGT---DVWLNNAQDIIREGIAT----- 1168

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK---ERFISG 735
               LKE   VI  ++ +M        Y +S+   + + +  KI E + K K   +  I  
Sbjct: 1169 ---LKE---VISTRDDIML-------YLISKG--MDKKLSFKIMENVRKGKGVTQEEIEE 1213

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              K+G+      N F    +   Y F K+HA AY +++++ A+ K HYP  F A   T+ 
Sbjct: 1214 MRKHGVP-----NWFIESCQKIKYMFPKAHAVAYVIMAFRIAYFKVHYPEAFYATYFTVR 1268

Query: 796  MDNV---------EKIKKFCQ--DARQFNIQIMPPSVNT--------------------- 823
             D+          + IK   +  +A+  N      S+ T                     
Sbjct: 1269 ADDFNLDIVLKGKDSIKNAIKEIEAKGNNASPKEKSLLTVLEVALEMYLRGFKFINVDLY 1328

Query: 824  --PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                V F + +  +   L +++GVG   A+ I +   +  F S+EDF +R    K+++ V
Sbjct: 1329 KSDAVKFLITEEGLLPPLNSLEGVGIQAAKTIAQERENGKFLSVEDFRNRT---KVSKTV 1385

Query: 882  LESLVFAGAL 891
            +E L   G L
Sbjct: 1386 IEILKQHGCL 1395


>gi|307264910|ref|ZP_07546472.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
            Rt8.B1]
 gi|306920168|gb|EFN50380.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
            Rt8.B1]
          Length = 1407

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 197/908 (21%), Positives = 338/908 (37%), Gaps = 207/908 (22%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            V  + +LV   +G + L E++S+  L +   ++ RI  S L  +  EGLI+ +    G +
Sbjct: 583  VYHVTILVKDQKGLRNLYEIISKSNL-EYFHRTPRIPKSLLISM-REGLIIGSACEQGEV 640

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTH 207
             RA   N  +   + +++F      + +  +   +     +  +  RE   ++  L   +
Sbjct: 641  FRAIVSNLEEKKLENIISFYDYLEVQPVGNNEFLIEKGEVKSVEELREINRKIYLLGKKY 700

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
               +VAT +  FL   D     +LMA         KD  R  P  Y K   EM+  F  L
Sbjct: 701  NKLVVATGDVHFLDPWDNIYRKILMAGK-----GYKDADR-QPPLYFKTTDEMLKEFEYL 754

Query: 268  PE--ALENTVEIARRCSFILQVHAPI----LPRFIEKECDDIQKEEENELRNKAVAGLEV 321
             E  A E  ++   + + +++   PI     P  IE          E ELR       ++
Sbjct: 755  GEEVAKEIVIDNPNKIADLVEEVKPIPDGTFPPVIEGA--------EEELR-------KL 799

Query: 322  RLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
             L +     G    +  Q RLD ELN I    ++  ++I    +  + K+   VG  RGS
Sbjct: 800  TLDKAHEIYGDPLPEIVQNRLDRELNSIINNGYAVMYIIAQKLVSKSLKDGYLVG-SRGS 858

Query: 381  GAGSVTAYALTITDIDPL-----------------------------------------R 399
               S+ A    IT+++PL                                          
Sbjct: 859  VGSSLVATMSGITEVNPLPPHYVCPNCKYSEFITDGSYGCGVDMPDKTCPDCGTLMKKDG 918

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            F + FE FL  +    PD D++F  + +    +Y +  +G   V +  T G+L  K A  
Sbjct: 919  FDIPFEVFLGFEGDKEPDIDLNFSGEYQPIAHKYTEELFGKGHVFRAGTIGTLADKTAYG 978

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V +  +                                R   +    + RL   +    
Sbjct: 979  YVKKYFEE-------------------------------RNLIVHKSEIKRL---TIGCT 1004

Query: 520  GLYRHASTHAAGIVI--GDRPLSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H  GI++   D+ +    P+        +D+  T F+   I    L+K D L
Sbjct: 1005 GVKRTTGQHPGGIMVVPKDKSIYDFTPIQHPADAEDTDVITTHFDYHSI-SGRLLKLDIL 1063

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGI 620
            G    T+++   D        V+   IP DD +T  L T+               GTLG+
Sbjct: 1064 GHDDPTVIRMLEDLTG-----VNAREIPLDDKKTMSLFTSVEALGIDPEELNTPVGTLGL 1118

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +RQ L    P    +++ +  L       ++ + N +   +E I +       
Sbjct: 1119 PEFGTKFVRQMLIDTHPTTFAELVRISGLSHGT---DVWLNNAQDIIREGIAT------- 1168

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK---ERFISGAS 737
             LKE   VI  ++ +M        Y +S+   + + +  KI E + K K      I    
Sbjct: 1169 -LKE---VISTRDDIML-------YLISKG--MDKKLSFKIMENVRKGKGVAPEEIEEMK 1215

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            K+G+      N F    +   Y F K+HA AY +++++ A+ K HYP  F A   T+  D
Sbjct: 1216 KHGVP-----NWFIESCQKIKYMFPKAHAVAYVIMAFRIAYFKVHYPEAFYATYFTVRAD 1270

Query: 798  NV---------EKIKKFCQ--DARQFNIQIMPPSVNT----------------------- 823
            +          + IK   +  +A+  N      S+ T                       
Sbjct: 1271 DFNLDIVLKGKDSIKNAIKEIEAKGNNASPKEKSLLTVLEVALEMYLRGFKFINVDLYKS 1330

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
              V F + +  +   L +++GVG   A+ I +   +  F S+EDF +R    K+++ V+E
Sbjct: 1331 DAVKFLITEEGLLPPLNSLEGVGIQAAKTIAQERENGKFLSVEDFRNRT---KVSKTVIE 1387

Query: 884  SLVFAGAL 891
             L   G L
Sbjct: 1388 ILKQYGCL 1395


>gi|167040287|ref|YP_001663272.1| DNA polymerase III PolC [Thermoanaerobacter sp. X514]
 gi|300914371|ref|ZP_07131687.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307724393|ref|YP_003904144.1| DNA polymerase III subunit alpha [Thermoanaerobacter sp. X513]
 gi|166854527|gb|ABY92936.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X514]
 gi|300889306|gb|EFK84452.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307581454|gb|ADN54853.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X513]
          Length = 1407

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 196/910 (21%), Positives = 338/910 (37%), Gaps = 211/910 (23%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            V  + +LV   +G + L E++S+  L +   ++ RI  S L     EGLI+ +    G +
Sbjct: 583  VYHVTILVKDQKGLRNLYEIISKSNL-EYFHRTPRIPKSLLIS-RREGLIIGSACEQGEV 640

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTH 207
             RA   N  +   + +++F      + +  +   +     +  +  RE   ++  L   +
Sbjct: 641  FRAIVSNLEEKKLENIISFYDYLEVQPVGNNEFLIGKGEVKSVEELREINRKIYLLGKKY 700

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
               +VAT +  FL   D     +LMA         KD  R  P  Y K   EM+  F  L
Sbjct: 701  NKLIVATGDVHFLDPWDDIYRKILMAGK-----GYKDADR-QPPLYFKTTDEMLKEFEYL 754

Query: 268  PE--ALENTVEIARRCSFILQVHAPI----LPRFIEKECDDIQKEEENELRNKAVAGLEV 321
             E  A E  ++   + + +++   PI     P  IE          E ELR         
Sbjct: 755  GEEVAKEIVIDNPNKIADLVEEVKPIPDGTFPPVIEGA--------EEELR--------- 797

Query: 322  RLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            RL      + Y     +  + RLD ELN I    ++  ++I    +  + K+   VG  R
Sbjct: 798  RLTLDKAHEIYGDPLPEIVQNRLDRELNSIINNGYAVMYIIAQKLVSKSLKDGYLVG-SR 856

Query: 379  GSGAGSVTAYALTITDIDPL---------------------------------------- 398
            GS   S+ A    IT+++PL                                        
Sbjct: 857  GSVGSSLVATMSGITEVNPLPPHYVCPNCKYSEFITDGSYGCGVDMPDKTCPHCGTLMRK 916

Query: 399  -RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
              F + FE FL  +    PD D++F  + +    +Y +  +G   V +  T G+L  K A
Sbjct: 917  DGFDIPFEVFLGFEGDKEPDIDLNFSGEYQPIAHKYTEELFGKGHVFRAGTIGTLADKTA 976

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
                       Y  V                        ++ E R        +  ++  
Sbjct: 977  -----------YGYV-----------------------KKYFEERNLIVHKSEIKRLTVG 1002

Query: 518  LEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFD 572
              G+ R    H  GI++   D+ +    P+        +D+  T F+   I    L+K D
Sbjct: 1003 CTGVKRTTGQHPGGIMVVPKDKSIYDFTPIQHPADAEDTDVITTHFDYHSI-SGRLLKLD 1061

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTL 618
             LG    T+++   D        ++   IP DD +T  L T+               GTL
Sbjct: 1062 ILGHDDPTVIRMLEDLTG-----INAREIPLDDKKTMSLFTSVEALGIDPEELNTPVGTL 1116

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G+ +  +  +RQ L   +P    +++ +  L       ++ + N +   +E I +     
Sbjct: 1117 GLPEFGTKFVRQMLIDTRPTTFAELVRISGLSHGT---DVWLNNAQDIIREGIAT----- 1168

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK---ERFISG 735
               LKE   VI  ++ +M        Y +S+   + + +  KI E + K K   +  I  
Sbjct: 1169 ---LKE---VISTRDDIML-------YLISKG--MDKKLSFKIMENVRKGKGVTQEEIEE 1213

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              K+G+      N F    +   Y F K+HA AY +++++ A+ K HYP  F A   T+ 
Sbjct: 1214 MRKHGVP-----NWFIESCQKIKYMFPKAHAVAYVIMAFRIAYFKVHYPEAFYATYFTVR 1268

Query: 796  MDNV---------EKIKKFCQ--DARQFNIQIMPPSVNT--------------------- 823
             D+          + IK   +  +A+  N      S+ T                     
Sbjct: 1269 ADDFNLDIVLKGKDSIKNAIKEIEAKGNNASPKEKSLLTVLEVALEMYLRGFKFINVDLY 1328

Query: 824  --PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                V F + +  +   L +++GVG   A+ I +   +  F S+EDF +R    K+++ V
Sbjct: 1329 KSDAVKFLITEEGLLPPLNSLEGVGIQAAKTIAQERENGKFLSVEDFRNRT---KVSKTV 1385

Query: 882  LESLVFAGAL 891
            +E L   G L
Sbjct: 1386 IEILKQHGCL 1395


>gi|295094742|emb|CBK83833.1| DNA polymerase III catalytic subunit, PolC type [Coprococcus sp.
            ART55/1]
          Length = 1603

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 164/814 (20%), Positives = 305/814 (37%), Gaps = 178/814 (21%)

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            GY++    ++V+L      P+VAT +  FL  EDY    ++M           D   + P
Sbjct: 842  GYNK----RIVELGEMFNKPVVATCDVHFLDPEDYIYRAIIMKS------KGFDDADMQP 891

Query: 251  DHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIE---KECD 301
              Y +   EM++ F  L         + NT  IA     I  V     P  IE   +   
Sbjct: 892  PLYFRTTEEMLAEFQYLGSDKAKEVVITNTNMIADMIERIEPVRPDKAPPIIENSDQTLT 951

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            DI   + +E+    +                     ++RLD EL+ I    F+  ++I  
Sbjct: 952  DICYTKAHEIYGPDLP-----------------PQVQERLDRELHSIISNGFAVMYIIAQ 994

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------------ 403
              +  +  +   VG  RGS   S  A    IT+++PL    +                  
Sbjct: 995  KLVWDSNDHGYLVG-SRGSVGSSFVATMAGITEVNPLSAHYICPKCHFVDFDSELVKSYS 1053

Query: 404  ---------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                       FE FL  +    PD D++F  + + +   Y + 
Sbjct: 1054 GMSGCDMPDRDCPNCGTPLIKEGHDIPFETFLGFNGDKEPDIDLNFSGEYQSKAHAYTEV 1113

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G  +  +  T G +  K A   V    +  +S+ + + +   +      + +   +++
Sbjct: 1114 LFGKGKAFKAGTVGGVAEKTAFGYVYNYFK-DHSKEELMAEAKASGMDEKSAKKYAEENA 1172

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYR---DVRS 551
               + R     ++RL   +    G+ R    H  G+++  R   +    P+     DV S
Sbjct: 1173 TVTKRRC---EMERL---ALGCTGVRRTTGQHPGGMIVLPRHEEIYSFTPIQHPANDVTS 1226

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            D+  + F    I+   L+K D LG    T++++  D        +D + I  DD +   L
Sbjct: 1227 DIITSHFEYHSIDH-NLLKLDILGHDDPTMIRRLEDLTG-----LDATKIRLDDKDVMEL 1280

Query: 612  L-TTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
              +TK              G+LG+ +  +    Q L   +P C  D++ +  L     + 
Sbjct: 1281 FHSTKSLGITPEDINGIPLGSLGVPEFGTDFAMQMLIDAKPTCFSDLVRIAGLAHGTDV- 1339

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
                     N +E I S    I   +     +++Y   +     L +G + +  + +R+ 
Sbjct: 1340 ------WLGNAQELIKSGKCTISTAICCRDDIMVYLIHM----GLDAGLAFNIMEKVRKG 1389

Query: 717  MGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            +  K K ++ D  K       + +G+      + +    +   Y F K+HAAAY +++++
Sbjct: 1390 IVAKGKCDKWDDWKAEM----AAHGVP-----DWYVWSCQKIKYMFPKAHAAAYVMMAWR 1440

Query: 776  TAWMKTHYPVEFLAASMTLEMDN----------------------VEKIKKFCQD----- 808
             AW K +YP+E+  A  ++  D+                      V+K K+  +D     
Sbjct: 1441 IAWFKVNYPLEYYTAFFSIRADDFSYEMMCFGKERVLFHINEISKVDKNKRSAKDEGKLK 1500

Query: 809  ---------ARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                     AR ++   +P  +     D F++ D +I  S A+I+G+G   A+ + +A+ 
Sbjct: 1501 DLKIVLEMYARGYDF--VPIDIYKAKADRFQIIDGKIMPSFASIEGMGEKAAQQLYDAAQ 1558

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              PF S E+   R    K+ +  +E +   G LD
Sbjct: 1559 KGPFLSKEEINERA---KIGKGTIEKMSELGILD 1589


>gi|116333947|ref|YP_795474.1| DNA polymerase III PolC [Lactobacillus brevis ATCC 367]
 gi|122269369|sp|Q03QS9|DPO3_LACBA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116099294|gb|ABJ64443.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus brevis
            ATCC 367]
          Length = 1445

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 205/950 (21%), Positives = 343/950 (36%), Gaps = 241/950 (25%)

Query: 76   DIDMQDNLK--MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            DI   D L   MT+            +LL  T  G + + +LVS   + D   +  R+  
Sbjct: 593  DIQYHDQLNDHMTDNDAYKHARPNHAILLAKTQAGLKNMFKLVSASNV-DYYYRVPRVPR 651

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY- 192
            S L+E   EG+I+ +  SSG +  A      QV        K  F D  Y+ +Q    Y 
Sbjct: 652  SVLEEY-REGIIVGSACSSGEVFTAMM-QKGQVEAAA----KAKFYD--YLEVQPSAAYQ 703

Query: 193  ---------DRYRESQVVQ--LAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
                     DR    ++V+  +   H+L  P+VAT +  FL+ +DY    +L+   HS  
Sbjct: 704  PLIDSGLIADRENMEEIVRNMVKLGHDLNKPVVATGDVHFLNPDDYIYRKILI---HSQG 760

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +     +  PD +     EM++ F+ L E      E A+           I+    +K 
Sbjct: 761  GANPLNRQELPDVHFMTTDEMLTDFAYLGE------ETAKE----------IVVTNTQKI 804

Query: 300  CDDIQKEE--ENELRNKAVAGLEVRLAQGAIAKGYHA-------QDYRQRLDFELNVIAR 350
             DDI +    +++L    + G E  + Q  +    HA       +  + R+D EL  I  
Sbjct: 805  ADDIDEVHPLKDKLYTPRMEGAEDEIRQRTMDTA-HAMYGDPLPELVQHRVDRELKSIIG 863

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------ 398
              FS  +LI    +  + K+   VG  RGS   S+ A    IT+++PL            
Sbjct: 864  NGFSVIYLIAQRLVAKSNKDGYLVG-SRGSVGSSLVATLTGITEVNPLPPHYRCPKCQYS 922

Query: 399  -----------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                           ++ FE FL      +PD D++F  D +  
Sbjct: 923  HFYTKGEYSSGYDLPEKDCPECGTLMIGDGHNIPFETFLGFKGNKVPDIDLNFSGDYQPI 982

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G + V +  T G++  K A   V +A +    Q                  
Sbjct: 983  AHNYTKVLFGEKNVYRAGTIGTVADKTAYGYV-KAYERDTEQT----------------- 1024

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR A      +DRL   ++   G+ R    H AGI++        VP Y D+
Sbjct: 1025 --------FRGAE-----IDRL---AKGATGVKRTTGQHPAGIIV--------VPDYMDI 1060

Query: 550  RSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
                P+             T F+   I    ++K D LG    T+++   D        V
Sbjct: 1061 FDFTPIQYPADDQSAAWQTTHFDFHSIHD-NILKIDILGHDDPTMIRTLQDLSG-----V 1114

Query: 597  DLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            D + IP DD     L               +  GTLG+ +  +  +R  LE   P     
Sbjct: 1115 DPTTIPMDDPGVMGLFSGTDSLGVTPEQIQSKTGTLGVPEFGTRFVRGMLEETHPQNYSQ 1174

Query: 643  IIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
            ++ +  L        G  + ++     KNG   I ++    D ++ +     +  E   Q
Sbjct: 1175 LLQISGLSHGTDVWLGNAEELI-----KNGTATIANVIGCRDNIMTDLINFGLDSETSFQ 1229

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            + + +               G+ I +E   Q++   +      I   + +          
Sbjct: 1230 VMEHVR-------------KGRGIPDEW--QEKMKATDCPDWYIDSCLKIK--------- 1265

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI-----KKFCQDA-RQ 811
             Y F ++HAAAY +++ + A+ K ++P+ + AA  ++  D+ + +     K   + A + 
Sbjct: 1266 -YMFPRAHAAAYVLMALRVAYFKVYFPIIYYAAYFSVRADDFDVVAMSQGKTAVKAAMKA 1324

Query: 812  FNIQIMPPSV----------------------------NTPCVDFKVGDNRIYYSLAAIK 843
             N Q M  S                              +   D+ +  + +     A  
Sbjct: 1325 INDQGMDASAKDKNLLTVLELANEMLERGFKFKMIDLEKSDAADWIIDGDTLIAPFKAAP 1384

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVD-SKKLNRRVLESLVFAGALD 892
            G+G   A+ I+ A  D+PF S ED   R   SK L   + E+ V AG  D
Sbjct: 1385 GLGLNVAKQIVAARNDRPFISKEDLAKRGKVSKTLIDFMTENGVLAGLPD 1434


>gi|228998594|ref|ZP_04158181.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
 gi|228761062|gb|EEM10021.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
          Length = 1433

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 198/922 (21%), Positives = 343/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
             P+VAT N  +L  ED     +L++    +  +++   P V    Y +  +EM+  FS L
Sbjct: 725  KPVVATGNVHYLDPEDAMYRKILVSSQGGANPLNRHSLPPV----YFRTTNEMLDCFSFL 780

Query: 268  PE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL-- 319
             E       + NT ++A   S I  VH P+                +++L    + G   
Sbjct: 781  GEEKAKEIVVTNTQKVA---SLIGDVH-PV----------------KDDLYTPKIEGADD 820

Query: 320  EVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
            E R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG
Sbjct: 821  ETRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG 880

Query: 376  PGRGSGAGSVTAYALTITDIDPL------------------------------------- 398
              RGS   S  A  + IT+++PL                                     
Sbjct: 881  -SRGSVGSSFVATMMEITEVNPLPPHYVCPNCKQSEFFNDGSVGSGFDLPDKECPTCNIP 939

Query: 399  ----RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  
Sbjct: 940  YVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAE 999

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A           Y  V                 +  A D       + +  +DRL+  
Sbjct: 1000 KTA-----------YGYV-----------------KGYASDHNL---TIRNAEIDRLV-- 1026

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
                 G+ R    H  GI++        VP Y D+    P+             T F+  
Sbjct: 1027 -AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQFPADSVGAEWRTTHFDFH 1077

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT-------- 613
             I    L+K D LG    T+++   D        VD   IP DD E   + +        
Sbjct: 1078 SIHD-NLLKLDILGHDDPTVIRMLQDLSG-----VDPKTIPTDDPEVMKIFSGPESLGVT 1131

Query: 614  ------TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNN 663
                    GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN 
Sbjct: 1132 EEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNG 1191

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
                 E I       D M+      +IYQ     +A     + + E+  +R+  GK + E
Sbjct: 1192 TCTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPE 1234

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            E +++         +N    +  ++      K   Y F K+HAAAY +++ + A+ K H+
Sbjct: 1235 EWEEE--------MRNNNVPSWYIDS----CKKIKYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVNTPCV-------- 826
             + F AA  T+  D+ +          I+    +  Q  +   P   +   V        
Sbjct: 1283 ALLFYAAYFTVRADDFDVDAMVKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 827  -----------------DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                             DF +  + +     AI G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATDFIIDGDTLIPPFNAIPGLGTNAALSIVEARGNGEFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    KL+R ++E L   G L
Sbjct: 1403 QR---SKLSRTIIEYLDSQGCL 1421


>gi|167635812|ref|ZP_02394121.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0442]
 gi|254739618|ref|ZP_05197312.1| DNA polymerase III PolC [Bacillus anthracis str. Kruger B]
 gi|167528769|gb|EDR91527.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0442]
          Length = 1433

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 199/922 (21%), Positives = 342/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 782  EDVAKEIVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822  TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 881  SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPTCNIPY 940

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 941  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEK 1000

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1001 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1026

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1027 AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQYPADSIGAEWRTTHFDFHS 1078

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        +D   IP DD E   + +         
Sbjct: 1079 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTE 1132

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1133 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1193 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1235

Query: 725  MDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  K   + G   +   K               Y F K+HAAAY +++ + A+ K H+
Sbjct: 1236 WEEDMKSNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------ 822
             + F AA  T+  D  +VE + K     R       Q  +   P   +            
Sbjct: 1283 ALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   DF +  + +     A+ G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGEFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    K+++ ++E L   G L
Sbjct: 1403 QR---SKVSKTIIEYLDSQGCL 1421


>gi|196036920|ref|ZP_03104304.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus W]
 gi|228928866|ref|ZP_04091898.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
 gi|195990475|gb|EDX54459.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus W]
 gi|228830673|gb|EEM76278.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
          Length = 1433

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 199/922 (21%), Positives = 342/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGGTLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 782  EDVAKEIVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822  TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 881  SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPTCNIPY 940

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 941  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEK 1000

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1001 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1026

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1027 AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQYPADSIGAEWRTTHFDFHS 1078

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        +D   IP DD E   + +         
Sbjct: 1079 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTE 1132

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1133 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1193 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1235

Query: 725  MDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  K   + G   +   K               Y F K+HAAAY +++ + A+ K H+
Sbjct: 1236 WEEDMKSNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------ 822
             + F AA  T+  D  +VE + K     R       Q  +   P   +            
Sbjct: 1283 ALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   DF +  + +     A+ G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGEFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    K+++ ++E L   G L
Sbjct: 1403 QR---SKVSKTIIEYLDSQGCL 1421


>gi|229092858|ref|ZP_04223992.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
 gi|228690480|gb|EEL44263.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
          Length = 1433

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 199/922 (21%), Positives = 342/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 782  EDVAKEIVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822  TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 881  SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPTCNIPY 940

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 941  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEK 1000

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1001 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1026

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1027 AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQYPADSIGAEWRTTHFDFHS 1078

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        +D   IP DD E   + +         
Sbjct: 1079 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTE 1132

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1133 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1193 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1235

Query: 725  MDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  K   + G   +   K               Y F K+HAAAY +++ + A+ K H+
Sbjct: 1236 WEEDMKSNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------ 822
             + F AA  T+  D  +VE + K     R       Q  +   P   +            
Sbjct: 1283 ALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   DF +  + +     A+ G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGEFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    K+++ ++E L   G L
Sbjct: 1403 QR---SKVSKTIIEYLDSQGCL 1421


>gi|228935132|ref|ZP_04097959.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
 gi|228824497|gb|EEM70302.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
          Length = 1433

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 199/922 (21%), Positives = 342/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 782  EDVAKEIVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822  TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 881  SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPTCNIPY 940

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 941  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEK 1000

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1001 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1026

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1027 AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQYPADSIGAEWRTTHFDFHS 1078

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        +D   IP DD E   + +         
Sbjct: 1079 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTE 1132

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1133 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1193 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1235

Query: 725  MDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  K   + G   +   K               Y F K+HAAAY +++ + A+ K H+
Sbjct: 1236 WEEDMKSNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------ 822
             + F AA  T+  D  +VE + K     R       Q  +   P   +            
Sbjct: 1283 ALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   DF +  + +     A+ G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGEFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    K+++ ++E L   G L
Sbjct: 1403 QR---SKVSKTIIEYLDSQGCL 1421


>gi|227890229|ref|ZP_04008034.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849231|gb|EEJ59317.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 1432

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 161/775 (20%), Positives = 296/775 (38%), Gaps = 169/775 (21%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT++S ++   +     +L+A          +R +  PD +  +  EM+  FS L E
Sbjct: 724  PVVATSDSHYVEPHEAIYRKILLAAQKGN----PNRNKNLPDLHFYSTQEMLDAFSFLGE 779

Query: 270  ------ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAVAGLE 320
                   ++NT ++A +   I  + + + P  IE   +E  D+   +  EL  K +  + 
Sbjct: 780  DVAKEIVIDNTNKLADQIEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKI- 838

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                               R++ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 839  ----------------VEDRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 881

Query: 381  GAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFC-----QDR 426
               S+ A    IT+++PL         ++S  FE         +PD +   C     +D 
Sbjct: 882  VGSSLVATMSGITEVNPLAPHYRCPNCKYSKFFENGEYGSGYDLPDKECPKCGTPLVKDG 941

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +D         +G ++V  I    S   +    +  R +              P++    
Sbjct: 942  QDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNYIRVM------------FGPDNSFRA 988

Query: 487  VSLQAIADDSRF---------REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--G 535
             ++  +AD + +          E  L +  +DRL   +    G+ R    H AGIV+   
Sbjct: 989  GTIATVADKTAYGYVKHYEDENELHLRNAELDRL---AVGASGVKRTTGQHPAGIVVVPD 1045

Query: 536  DRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            D  +    P+     D+ +    T F+   I    ++KFD LG    T+++     + Q 
Sbjct: 1046 DMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHD-NILKFDILGHDDPTMIR-----MLQD 1099

Query: 593  GVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPD 638
               VD   IP DD     L ++               GTLG+ +  +  +R  LE  +P 
Sbjct: 1100 LSGVDPLTIPPDDPGVMSLFSSPEILGVTPEQIQSKTGTLGVPEFGTKFVRGMLEETKPT 1159

Query: 639  CIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
               +++ +  L        G  ++++      NG  K+ ++    D ++ +     +  E
Sbjct: 1160 TFSELLQISGLSHGTDVWLGNAEDLI-----NNGTCKLKNVIGCRDNIMMDLIHWGVKPE 1214

Query: 694  -QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
                 +  +  G  +S+ ++       +I ++ DK  + +I    K              
Sbjct: 1215 VAFFTMESVRHGRGISDENM-------EILKKNDKIPDWYIPSCLK-------------- 1253

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD------------NVE 800
                  Y F K+HA AY +++ + AW K +YPV + A+  ++  D             V+
Sbjct: 1254 ----IKYMFPKAHATAYILMALRIAWFKVYYPVIYYASYFSVRADLFDLVAMSHGKNTVK 1309

Query: 801  KIKKFCQD---------------------ARQFNIQIMPPSVN-TPCVDFK-VGDNRIYY 837
               K  QD                       +  I+I    VN +   DFK + D+ I  
Sbjct: 1310 AAMKEIQDKGMDVSAKDKSLLTVLEIANECLERGIKIKMVDVNESEATDFKIIDDHTILA 1369

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               A+ G+G   A+ I+ A A++ F S ED  +R    K+++ ++E     G L+
Sbjct: 1370 PFNAVPGLGDNAAKQIVTARAEQKFLSKEDLATR---GKVSQTIMEYFENNGVLE 1421


>gi|47569095|ref|ZP_00239784.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus G9241]
 gi|47554257|gb|EAL12619.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus G9241]
          Length = 1433

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 199/922 (21%), Positives = 342/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 782  EDVAKEIVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822  TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 881  SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPTCNIPY 940

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 941  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEK 1000

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1001 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1026

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1027 AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQYPADSIGAEWRTTHFDFHS 1078

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        +D   IP DD E   + +         
Sbjct: 1079 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTE 1132

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1133 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1193 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1235

Query: 725  MDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  K   + G   +   K               Y F K+HAAAY +++ + A+ K H+
Sbjct: 1236 WEEDMKSNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------ 822
             + F AA  T+  D  +VE + K     R       Q  +   P   +            
Sbjct: 1283 ALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   DF +  + +     A+ G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    K+++ ++E L   G L
Sbjct: 1403 QR---SKVSKTIIEYLDSQGCL 1421


>gi|30263821|ref|NP_846198.1| DNA polymerase III PolC [Bacillus anthracis str. Ames]
 gi|47529245|ref|YP_020594.1| DNA polymerase III PolC [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186668|ref|YP_029920.1| DNA polymerase III PolC [Bacillus anthracis str. Sterne]
 gi|52141670|ref|YP_085159.1| DNA polymerase III PolC [Bacillus cereus E33L]
 gi|65321145|ref|ZP_00394104.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
            [Bacillus anthracis str. A2012]
 gi|165872624|ref|ZP_02217255.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0488]
 gi|170687849|ref|ZP_02879063.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0465]
 gi|170706900|ref|ZP_02897358.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0389]
 gi|190568456|ref|ZP_03021363.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis Tsiankovskii-I]
 gi|196042171|ref|ZP_03109454.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus NVH0597-99]
 gi|218904946|ref|YP_002452780.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus AH820]
 gi|227813274|ref|YP_002813283.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. CDC 684]
 gi|228947537|ref|ZP_04109827.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            monterrey BGSC 4AJ1]
 gi|229123331|ref|ZP_04252535.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
 gi|229601637|ref|YP_002868056.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0248]
 gi|254683475|ref|ZP_05147335.1| DNA polymerase III PolC [Bacillus anthracis str. CNEVA-9066]
 gi|254721996|ref|ZP_05183785.1| DNA polymerase III PolC [Bacillus anthracis str. A1055]
 gi|254756009|ref|ZP_05208040.1| DNA polymerase III PolC [Bacillus anthracis str. Vollum]
 gi|254759330|ref|ZP_05211355.1| DNA polymerase III PolC [Bacillus anthracis str. Australia 94]
 gi|301055308|ref|YP_003793519.1| DNA polymerase III subunit alpha [Bacillus anthracis CI]
 gi|30258465|gb|AAP27684.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. Ames]
 gi|47504393|gb|AAT33069.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. 'Ames Ancestor']
 gi|49180595|gb|AAT55971.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. Sterne]
 gi|51975139|gb|AAU16689.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
 gi|164711656|gb|EDR17202.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0488]
 gi|170128318|gb|EDS97187.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0389]
 gi|170668165|gb|EDT18914.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0465]
 gi|190560460|gb|EDV14438.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis Tsiankovskii-I]
 gi|196027023|gb|EDX65647.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus NVH0597-99]
 gi|218536830|gb|ACK89228.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus AH820]
 gi|227006508|gb|ACP16251.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. CDC 684]
 gi|228660107|gb|EEL15743.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
 gi|228812057|gb|EEM58388.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            monterrey BGSC 4AJ1]
 gi|229266045|gb|ACQ47682.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0248]
 gi|300377477|gb|ADK06381.1| DNA polymerase III subunit alpha [Bacillus cereus biovar anthracis
            str. CI]
          Length = 1433

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 199/922 (21%), Positives = 342/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 782  EDVAKEIVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822  TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 881  SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPTCNIPY 940

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 941  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEK 1000

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1001 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1026

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1027 AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQYPADSIGAEWRTTHFDFHS 1078

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        +D   IP DD E   + +         
Sbjct: 1079 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTE 1132

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1133 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1193 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1235

Query: 725  MDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  K   + G   +   K               Y F K+HAAAY +++ + A+ K H+
Sbjct: 1236 WEEDMKSNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------ 822
             + F AA  T+  D  +VE + K     R       Q  +   P   +            
Sbjct: 1283 ALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   DF +  + +     A+ G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGEFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    K+++ ++E L   G L
Sbjct: 1403 QR---SKVSKTIIEYLDSQGCL 1421


>gi|49478392|ref|YP_037879.1| DNA polymerase III PolC [Bacillus thuringiensis serovar konkukian
            str. 97-27]
 gi|49329948|gb|AAT60594.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
            konkukian str. 97-27]
          Length = 1433

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 199/922 (21%), Positives = 342/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 782  EDVAKEIVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822  TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 881  SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPTCNIPY 940

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 941  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEK 1000

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1001 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1026

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1027 AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQYPADSIGAEWRTTHFDFHS 1078

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        +D   IP DD E   + +         
Sbjct: 1079 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTE 1132

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1133 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1193 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1235

Query: 725  MDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  K   + G   +   K               Y F K+HAAAY +++ + A+ K H+
Sbjct: 1236 WEEDMKSNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------ 822
             + F AA  T+  D  +VE + K     R       Q  +   P   +            
Sbjct: 1283 ALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   DF +  + +     A+ G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGEFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    K+++ ++E L   G L
Sbjct: 1403 QR---SKVSKTIIEYLDSQGCL 1421


>gi|167639871|ref|ZP_02398140.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0193]
 gi|177652036|ref|ZP_02934582.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0174]
 gi|254735856|ref|ZP_05193562.1| DNA polymerase III PolC [Bacillus anthracis str. Western North
            America USA6153]
 gi|167512272|gb|EDR87649.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0193]
 gi|172082405|gb|EDT67470.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0174]
          Length = 1433

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 199/922 (21%), Positives = 342/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 782  EDVAKEIVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822  TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 881  SRGSVGSSFVATMMEITEVNPLPPHYVCLKCKQSEFFNDGSVGSGFDLPDKECPTCNIPY 940

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 941  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEK 1000

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1001 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1026

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1027 AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQYPADSIGAEWRTTHFDFHS 1078

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        +D   IP DD E   + +         
Sbjct: 1079 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTE 1132

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1133 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1193 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1235

Query: 725  MDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  K   + G   +   K               Y F K+HAAAY +++ + A+ K H+
Sbjct: 1236 WEEDMKSNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------ 822
             + F AA  T+  D  +VE + K     R       Q  +   P   +            
Sbjct: 1283 ALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   DF +  + +     A+ G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGEFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    K+++ ++E L   G L
Sbjct: 1403 QR---SKVSKTIIEYLDSQGCL 1421


>gi|228986961|ref|ZP_04147087.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            tochigiensis BGSC 4Y1]
 gi|228772739|gb|EEM21179.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            tochigiensis BGSC 4Y1]
          Length = 1433

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 199/922 (21%), Positives = 342/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 782  EDVAKEIVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822  TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 881  SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPTCNIPY 940

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 941  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEK 1000

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1001 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1026

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1027 AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQYPADSIGAEWRTTHFDFHS 1078

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        +D   IP DD E   + +         
Sbjct: 1079 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTE 1132

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1133 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1193 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1235

Query: 725  MDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  K   + G   +   K               Y F K+HAAAY +++ + A+ K H+
Sbjct: 1236 WEEDMKSNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------ 822
             + F AA  T+  D  +VE + K     R       Q  +   P   +            
Sbjct: 1283 ALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   DF +  + +     A+ G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    K+++ ++E L   G L
Sbjct: 1403 QR---SKVSKTIIEYLDSQGCL 1421


>gi|229157394|ref|ZP_04285472.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
 gi|228626121|gb|EEK82870.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
          Length = 1433

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 199/922 (21%), Positives = 342/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 782  EDVAKEIVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822  TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 881  SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPACNIPY 940

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 941  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEK 1000

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1001 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1026

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1027 AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQYPADSIGAEWRTTHFDFHS 1078

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        +D   IP DD E   + +         
Sbjct: 1079 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTE 1132

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1133 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1193 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1235

Query: 725  MDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  K   + G   +   K               Y F K+HAAAY +++ + A+ K H+
Sbjct: 1236 WEEDMKSNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------ 822
             + F AA  T+  D  +VE + K     R       Q  +   P   +            
Sbjct: 1283 ALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   DF +  + +     A+ G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGEFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    K+++ ++E L   G L
Sbjct: 1403 QR---SKVSKTIIEYLDSQGCL 1421


>gi|42519364|ref|NP_965294.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
 gi|41583652|gb|AAS09260.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
          Length = 1432

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 161/775 (20%), Positives = 295/775 (38%), Gaps = 169/775 (21%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT++S ++   +     +L+A          +R +  PD +  +  EM+  FS L E
Sbjct: 724  PVVATSDSHYVEPHEAIYRKILLAAQKGN----SNRNKNLPDLHFYSTQEMLDAFSFLGE 779

Query: 270  ------ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAVAGLE 320
                   ++NT ++A +   I  + + + P  IE   +E  D+   +  EL  K +  + 
Sbjct: 780  DVAKEIVIDNTNKLADQIEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKI- 838

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                               R++ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 839  ----------------VEDRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 881

Query: 381  GAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFC-----QDR 426
               S+ A    IT+++PL         ++S  FE         +PD +   C     +D 
Sbjct: 882  VGSSLVATMSGITEVNPLAPHYRCPNCKYSKFFENGEYGSGYDLPDKECPKCGTPLVKDG 941

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +D         +G ++V  I    S   +    +  R +              P++    
Sbjct: 942  QDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNYIRVM------------FGPDNSFRA 988

Query: 487  VSLQAIADDSRF---------REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--G 535
             ++  +AD + +          E  L    +DRL   +    G+ R    H AGIV+   
Sbjct: 989  GTIATVADKTAYGYVKHYEDENELHLRKAELDRL---AAGASGVKRTTGQHPAGIVVVPD 1045

Query: 536  DRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            D  +    P+     D+ +    T F+   I    ++KFD LG    T+++     + Q 
Sbjct: 1046 DMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHD-NILKFDILGHDDPTMIR-----MLQD 1099

Query: 593  GVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPD 638
               VD   IP DD     L ++               GTLG+ +  +  +R  LE  +P 
Sbjct: 1100 LSGVDPLTIPPDDPGVMSLFSSPEILGVTSEQIQSKTGTLGVPEFGTKFVRGMLEETKPT 1159

Query: 639  CIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
               +++ +  L        G  ++++      NG  K+ ++    D ++ +     +  E
Sbjct: 1160 TFSELLQISGLSHGTDVWLGNAEDLI-----NNGTCKLKNVIGCRDNIMMDLIHWGVKPE 1214

Query: 694  -QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
                 +  +  G  +S+ ++       +I ++ DK  + +I    K              
Sbjct: 1215 VAFFTMESVRHGRGISDENM-------EILKKNDKIPDWYIPSCLK-------------- 1253

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD------------NVE 800
                  Y F K+HA AY +++ + AW K +YPV + A+  ++  D             V+
Sbjct: 1254 ----IKYMFPKAHATAYILMALRIAWFKVYYPVIYYASYFSVRADLFDLVAMSHGKNTVK 1309

Query: 801  KIKKFCQD---------------------ARQFNIQIMPPSVN-TPCVDFK-VGDNRIYY 837
               K  QD                       +  I+I    VN +   DFK + D+ I  
Sbjct: 1310 AAMKEIQDKGMDVSAKDKSLLTVLEIANECLERGIKIKMVDVNESEATDFKIIDDHTILA 1369

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               A+ G+G   A+ I+ A A++ F S ED  +R    K+++ ++E     G L+
Sbjct: 1370 PFNAVPGLGDNAAKQIVAARAEQKFLSKEDLATR---GKVSQTIMEYFENNGVLE 1421


>gi|228916455|ref|ZP_04080021.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            pulsiensis BGSC 4CC1]
 gi|228843034|gb|EEM88116.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            pulsiensis BGSC 4CC1]
          Length = 1433

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 199/922 (21%), Positives = 342/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDIGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 782  EDVAKEIVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822  TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 881  SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPACNIPY 940

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 941  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEK 1000

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1001 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1026

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1027 AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQYPADSIGAEWRTTHFDFHS 1078

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        +D   IP DD E   + +         
Sbjct: 1079 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTE 1132

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1133 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1193 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1235

Query: 725  MDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  K   + G   +   K               Y F K+HAAAY +++ + A+ K H+
Sbjct: 1236 WEEDMKSNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------ 822
             + F AA  T+  D  +VE + K     R       Q  +   P   +            
Sbjct: 1283 ALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   DF +  + +     A+ G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGEFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    K+++ ++E L   G L
Sbjct: 1403 QR---SKVSKTIIEYLDSQGCL 1421


>gi|239826652|ref|YP_002949276.1| DNA polymerase III PolC [Geobacillus sp. WCH70]
 gi|239806945|gb|ACS24010.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70]
          Length = 1435

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 165/808 (20%), Positives = 287/808 (35%), Gaps = 210/808 (25%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++V L     +P+VAT N  +L+ ED     +L+   HS   +        PD Y +   
Sbjct: 717  KIVMLGEKLNIPVVATGNVHYLNPEDKIYRKILI---HSQGGANPLNRYELPDVYFRTTD 773

Query: 259  EMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE--EENELRNK 314
            EM+  FS L E  A E  V   ++ + ++    PI  +      +  ++E  E +  R K
Sbjct: 774  EMLKCFSFLGEEKAKEIVVMNTQKIADLIGEVKPIKDKLYTPRIEGAEEEIREMSYRRAK 833

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
             + G  +             +   QRL+ EL  I    F+  +LI    ++ +  +   V
Sbjct: 834  EIYGDPL------------PEIVEQRLEKELKSIIGHGFAVIYLISHKLVKKSLDDGYLV 881

Query: 375  GPGRGSGAGSVTAYALTITDIDPL------------------------------------ 398
            G  RGS   S  A    IT+++PL                                    
Sbjct: 882  G-SRGSVGSSFVATMTEITEVNPLPPHYVCPNCKHSEFFNDGSVGSGFDLPDKNCPKCGT 940

Query: 399  -----RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
                    + FE FL      +PD D++F  + +     Y +  +G + V +  T G++ 
Sbjct: 941  KYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDNVYRAGTIGTVA 1000

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             K A   V                            +  A D      +L    +DRL  
Sbjct: 1001 DKTAYGFV----------------------------KGYASDLNL---QLRSAEIDRL-- 1027

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNM 560
             +    G+ R    H  GI++        VP Y D+    P+             T F+ 
Sbjct: 1028 -AAGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFTPIQYPADDTSSEWRTTHFDF 1078

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK----- 615
              I    L+K D LG    T+++   D        +D   IP DD E   + ++      
Sbjct: 1079 HSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSSTESLGV 1132

Query: 616  ---------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
                     GTLGI +  +  +RQ LE  +P    +++ +  L     +          N
Sbjct: 1133 TPEQIMCNVGTLGIPEFGTRFVRQMLEETKPKTFSELVQISGLSHGTDV-------WLGN 1185

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +E I +    +  ++     +++Y   + +  +    + + E+    + +  + +EEM 
Sbjct: 1186 AQELIQNGTCTLSEVIGCRDDIMVY--LIYRGLEPSLAFKIMESVRKGKGLTPEFEEEMR 1243

Query: 727  KQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            K    E +I    K                    Y F K+HAAAY +++ + A+ K H+P
Sbjct: 1244 KHDVPEWYIESCKK------------------IKYMFPKAHAAAYVLMAVRIAYFKVHHP 1285

Query: 785  VEFLAASMTLEMDN----------------VEKIK---------------------KFCQ 807
            + + A+  T+  ++                +E+I                      + C+
Sbjct: 1286 LLYYASYFTVRAEDFDLDAMIKGSAAIRKRIEEINAKGLNATAKEKSLLTVLEVALEMCE 1345

Query: 808  DARQF-NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
                F NI +      +   +F +  N +     AI G+GT  A +I+ A  +  F S E
Sbjct: 1346 RGFSFKNIDLY----RSQATEFVIDGNSLIPPFNAIPGLGTNVALNIVRAREEGEFLSKE 1401

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCF 894
            D   R    KL++ ++E L   G LD  
Sbjct: 1402 DLQQR---GKLSKTLIEYLESRGCLDSL 1426


>gi|269123116|ref|YP_003305693.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM
            12112]
 gi|268314442|gb|ACZ00816.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM
            12112]
          Length = 1465

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 197/948 (20%), Positives = 352/948 (37%), Gaps = 218/948 (22%)

Query: 88   QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML 147
            + K       +I +LV    G +RL ELVS  +L   G++  RI  + L++     LI  
Sbjct: 582  EKKPKIADTENITILVKNLAGLKRLYELVSISHLKYYGEKKPRILKTDLEKDRENFLI-- 639

Query: 148  TGGSSGPIDRAFFFNSSQVA-------------EKRLLTFKKLFGDRLY---VNLQRHRG 191
               SS PI    F     V+             +     + +++   +Y   + ++   G
Sbjct: 640  ---SSSPIYSGRFNKGKLVSLYVRGISREEIMQQLDFYDYVQVYPRCIYNDAIEMEEISG 696

Query: 192  YDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            Y+   +     VQ+A      +VAT N  +L + D ++   L+  +     +     ++ 
Sbjct: 697  YEFIEQMNKDFVQMAKEKNKLVVATGNVYYLDDRDKKSKAALLLGSDRAFRTY----QID 752

Query: 250  PDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              +Y +   EM+  FS L E       + NT +I  +   I  +        +E   D++
Sbjct: 753  TGNYYRTTEEMLDEFSYLNEEDIKDVVIYNTHKINDQIEKIKPIPDGDYKPVMEGAEDEV 812

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +    N   NKA       L +              R+  EL+ I    F+  +LI    
Sbjct: 813  R----NMTYNKAYELYGNPLPEAV----------ETRVKRELDSIIGNGFAVLYLIAQKL 858

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------ 399
            ++ +  N   VG  RGS   S+ AY + IT+++ L                         
Sbjct: 859  VKKSVDNGYLVG-SRGSVGSSLVAYFMGITEVNALYPHYRCEECKYFEMKDFEGSGVDLE 917

Query: 400  ---------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                            S+ FE F+       PD D++F  + + E+ +Y +  +G + V 
Sbjct: 918  EKNCPKCNSKLIRDGHSIPFEVFMGFKGDKTPDIDLNFSGEYQGEIHKYTKELFGDDYVF 977

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T   L  K A     +  +    +     K I N   +  SL+ +   +R  E +  
Sbjct: 978  RAGTISGLAEKNAYTTAKKYFEENIKK--DFEKEIYN--KYKTSLKKLDPITRSSEEKKL 1033

Query: 505  DPSVD--------RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV- 555
            +  ++         +  I+ K  G  +    H  G+++        VP Y+ +    PV 
Sbjct: 1034 EERINDYCNKNKAEIYRIATKCTGARKTTGQHPGGMIV--------VPDYKSIYDFTPVQ 1085

Query: 556  ------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
                        T F+   +++  L+K D LG    T L+     + Q    VD+  IP 
Sbjct: 1086 YPANDESSGSITTHFDYHVMDQQ-LVKLDILGHDDPTTLR-----MLQDLTNVDIYNIPL 1139

Query: 604  DDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
             D +   +  +               GT GI +  +  +++ LE   P    +++ +  L
Sbjct: 1140 TDPKVISIFNSTEALGVSEEQIGSKMGTNGIPEFGTDFVKKMLEDTLPTTFAELVRISGL 1199

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
                   ++ + N ++  +E I ++             VI  ++ +M    +  G   SE
Sbjct: 1200 SHGT---DVWLNNAQEYVREGIATLSE-----------VITVRDDIMN-RLIDKGMDKSE 1244

Query: 710  A----DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD---YGFN 762
            A    + +R+    K KE+ ++ KE  I  AS          NI E   +  +   Y F 
Sbjct: 1245 AFNIMEFVRKGQPSKNKEKWEQYKE--IMKAS----------NIDEWYIESCEKIKYMFP 1292

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAA------------SMTLEMD----NVEKIKKF- 805
            K HA AY +++ + A+ K  YP+EF  A             M   +D    N++K+K+  
Sbjct: 1293 KGHAVAYVMMAVRIAYFKVFYPLEFYTAFLNRKYADFSFEKMFGSIDEVKMNLQKLKELE 1352

Query: 806  -----CQDARQF------------NIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGT 847
                   D +Q              I+++   +  +  + F + D +I   L A+  +G 
Sbjct: 1353 TRDLKVLDKKQIILLEILVEMHYRGIELLNIDIYKSDSMKFTIEDGKIRLPLIAMDQLGE 1412

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              AR I E    K F S+ED   R    ++ + VLE+      L CFG
Sbjct: 1413 VVARTIAEEREIKEFTSIEDLTKRC---RIPKTVLET------LKCFG 1451


>gi|329929349|ref|ZP_08283102.1| DNA polymerase III, alpha subunit, Gram-positive type [Paenibacillus
            sp. HGF5]
 gi|328936718|gb|EGG33161.1| DNA polymerase III, alpha subunit, Gram-positive type [Paenibacillus
            sp. HGF5]
          Length = 1438

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 144/684 (21%), Positives = 254/684 (37%), Gaps = 163/684 (23%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
            S+VV++      P++AT N  +L   D    D+ +   H        +    PD + +  
Sbjct: 716  SKVVRIGEKLNKPVIATGNVHYLEPRDKLFRDITI---HGITGFSPLKDMRKPDAHFRTT 772

Query: 258  SEMVSIFSDLPE------ALENTVEIARRCS----FILQVHAPILPRFIEKECDDIQKEE 307
             EM+  F  L +       + NT E+A R      F  ++  PIL        D   +E 
Sbjct: 773  EEMLQEFEFLGQDKCYEVVVTNTSELADRFEELELFPDKLFTPIL--------DGADEEI 824

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             N   + A +     L +  +A          RL+ EL  I +  FS  +LI    ++ +
Sbjct: 825  RNTCYDTAKSIYGENLPEVVVA----------RLEKELEPIIKYGFSANYLISEKLVKKS 874

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------------------ 403
             ++   VG  RGS   SV A  L I++++PL    +                        
Sbjct: 875  NRDGYLVG-SRGSVGSSVVATFLGISEVNPLPAHYICLNSDCKHSEWFLDGSVPSGFDLP 933

Query: 404  -------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                               FE FL      +PD D++F  + +     + +  +G E V 
Sbjct: 934  DKACPECGNMMKGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHNFTKEMFGEENVF 993

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++  K A           Y +                      ++ R+R A L 
Sbjct: 994  RAGTIGTVAEKTAF-----GFAKKYEE---------------------HNNKRWRGAEL- 1026

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFN 559
                +RL   +    G+ R    H  GIV+      + ++ P+     DV ++   T F+
Sbjct: 1027 ----NRL---ASGCTGVKRSTGQHPGGIVVVPDYIEVEEITPVQFPADDVNAEWKTTHFD 1079

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK---- 615
                E A L+K D LG    T+++   D        VD + IP +D +   +  +     
Sbjct: 1080 YHAFE-ANLLKLDILGHDDPTMMRMLQDLTG-----VDPTTIPMNDPKVMSMFNSTEALG 1133

Query: 616  ----------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                       T G+ ++ +  +RQ L   QP    D++ +  L     +         K
Sbjct: 1134 VKPEQIRSPVATFGVPEMGTKFVRQMLVESQPSSFADLLQISGLSHGTGVWLGNAQELIK 1193

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG   I ++    D ++      +IY+  +   A L   + ++E+    R + ++  +EM
Sbjct: 1194 NGTCNIKTVIGCRDDIML----FLIYKAGM--DASL--AFKITESVRKGRGLSQEWIDEM 1245

Query: 726  DKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             K K  + +I    K                    Y F K+HAAAY + + +TA+ K +Y
Sbjct: 1246 KKCKVPQWYIDSCLK------------------IQYMFPKAHAAAYVISAVRTAYFKLYY 1287

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQ 807
            P+E+ A   ++  ++ + I+  CQ
Sbjct: 1288 PIEYYATYFSVRAEDFD-IELCCQ 1310


>gi|89098599|ref|ZP_01171481.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
 gi|89086561|gb|EAR65680.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
          Length = 1440

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 192/939 (20%), Positives = 344/939 (36%), Gaps = 215/939 (22%)

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +    + DN+   N  +   P+     LL  T  G + L +LVS  ++ +   +  R+
Sbjct: 592  GIEYHNQLNDNMGKGNAYQRARPS--HCTLLAQTEAGLKNLFKLVSISHM-NYFYRVPRV 648

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--------KKLFGDRLY 183
              S L++   EG+++ +G   G +  A      + AE  L +F        K ++   + 
Sbjct: 649  PRSLLEKY-REGILVGSGCDRGEVFEAMMQKGPEEAED-LASFYDYLEVHPKAVYAHLIE 706

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            + L R         S +V+L    ++P+ AT N  +L+  D     +L+   +S   +  
Sbjct: 707  LELVRDEKALEEIISNIVKLGEKLDIPVAATGNVHYLNPVDKIYRKILI---NSQGGANP 763

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                  PD + +  +EM+  FS L   +A E  VE   + + ++    PI       + D
Sbjct: 764  LNRHQLPDVHFRTTNEMLDAFSFLGKEKAKEIVVENTNKVADMIDSIKPIKDDLYTPKID 823

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                  + E+RN +   +  R+    + +   A     RL+ EL  I    F+  +LI  
Sbjct: 824  G----ADEEMRNMSY-DMARRIYGDELPEIVEA-----RLEKELKSIIGHGFAVIYLISH 873

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------- 398
              ++ +  +   VG  RGS   S  A    IT+++PL                       
Sbjct: 874  KLVKKSLNDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPACKHSEFFNDGSVGSG 932

Query: 399  ------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL      +PD D++F  + +     Y +  +G 
Sbjct: 933  FDLPDKNCPTCDIPYRKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGE 992

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            + V +  T G++  K A   V       Y Q + L                         
Sbjct: 993  DNVYRAGTIGTVADKTAYGYV-----KAYQQDNNL------------------------- 1022

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV----------- 549
             ++    +DRL   +    G+ R    H  GI++        VP Y D+           
Sbjct: 1023 -QIRGAEIDRL---ASGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQFPAD 1070

Query: 550  --RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
               S+   T F+   I    L+K D LG    T+++   D        +D   IP DD E
Sbjct: 1071 DRTSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPE 1124

Query: 608  TY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                             ++   GTLGI +  +  +RQ LE  +P    +++ +  L    
Sbjct: 1125 VMKIFSGTESLGVTQDQIMCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHG- 1183

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               ++ + N ++     I ++  +I     +    +IYQ        L   ++    + +
Sbjct: 1184 --TDVWLGNAQELIHNSICTLSEVIG-CRDDIMVYLIYQ-------GLEPAFAFKIMESV 1233

Query: 714  RRAMG--KKIKEEMDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            R+  G    ++EEM K +  E +I    K                    Y F K+HAAAY
Sbjct: 1234 RKGKGLSDDMEEEMRKNEVPEWYIDSCKK------------------IKYMFPKAHAAAY 1275

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMD--NVEKIKKFCQDAR----QFNIQIMPPS--- 820
             +++ + A+ K H+ + + AA  T+  +  +VE + +  Q  R    + N + +  S   
Sbjct: 1276 VLMAVRIAYFKVHHALLYYAAYFTVRAEDFDVEAMVRGSQAIRAKIEEINAKGLDASPKE 1335

Query: 821  -------------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                                       +   DF +  + +     AI G+GT  A +I++
Sbjct: 1336 KNLLTVMELALEMNERGYKFSKVDLYRSDATDFIIDGDSLIPPFNAIPGLGTNAALNIVK 1395

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            A  +  F S ED   R    ++++ +LE L   G L+  
Sbjct: 1396 ARGEGEFLSKEDLQQR---GRISKTILEYLDNHGCLESL 1431


>gi|256851261|ref|ZP_05556650.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 27-2-CHN]
 gi|260660685|ref|ZP_05861600.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 115-3-CHN]
 gi|282934729|ref|ZP_06339972.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 208-1]
 gi|297206128|ref|ZP_06923523.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16]
 gi|256616323|gb|EEU21511.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 27-2-CHN]
 gi|260548407|gb|EEX24382.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 115-3-CHN]
 gi|281301304|gb|EFA93605.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 208-1]
 gi|297149254|gb|EFH29552.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16]
          Length = 1439

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 163/781 (20%), Positives = 299/781 (38%), Gaps = 159/781 (20%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
             + +L     +P+VAT +  +L+ ED    ++L+A   S     K +P++   H+   + 
Sbjct: 720  NIYKLGQELNIPVVATGDCHYLNPEDKIYREILIAAQRSNPNRNKPQPKL---HFYSTQ- 775

Query: 259  EMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFI---EKECDDIQKEEEN 309
            EM+  FS + E       ++NT +IA     I  V + + P  I   +++  D+   +  
Sbjct: 776  EMLDAFSFMGEDIAKEIVIDNTNKIADEIEDIAPVKSGLYPPHIKDADQQMTDLTYNKAY 835

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL  K +  +                  + R++ ELN I    ++  +LI    +  + K
Sbjct: 836  ELYGKPLPKI-----------------VKDRIELELNSIISNGYAVIYLISQKLVAKSNK 878

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDI 420
            +   VG  RGS   S+ A    IT+++PL         ++S  FE         +PD   
Sbjct: 879  DGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPKCKYSHFFENGEYGSGFDLPD--- 934

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
              C +   E+++  Q+           TF        + D+       Y  V      + 
Sbjct: 935  KKCPECGTELVKDGQD-------IPFATFLGFHGD-KVPDIDLNFSGDYQPVAHNYIRVM 986

Query: 481  NDPAHPV---SLQAIADDS------RFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
              PA+     ++  +AD +       F E R  +     L  ++    G+ R    H AG
Sbjct: 987  FGPANSFRAGTISTVADKTAYGYAKHFEEERNLNLRSAELDRLATGTSGVKRTTGQHPAG 1046

Query: 532  IVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            IV+   D  +    P+     D+ +    T F+   I    ++KFD LG    T+++   
Sbjct: 1047 IVVVPDDMDIYDFTPVQYPADDLNAAWLTTHFDFHSIHD-NILKFDILGHDDPTMIR--- 1102

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQAL 632
              + Q    VD   IP DD     L               +  GTLG+ +  +  +R  L
Sbjct: 1103 --MLQDLSGVDPMTIPPDDPGVMSLFSGTDILGVTPEQIASKTGTLGVPEFGTKFVRGML 1160

Query: 633  EGMQPDCIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            E   P    +++ +  L        G  +++V      NG  K+ ++    D ++ +   
Sbjct: 1161 EETNPTTFSELLQISGLSHGTDVWLGNAEDLV-----NNGTCKLKNVIGCRDNIMMDLIH 1215

Query: 688  VIIYQEQVMQIAQ-LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
              +  E      + +  G  +S+ D+   A+ KK                  N I     
Sbjct: 1216 WGVKPEVAFSTMESVRHGRGISDDDM---AVLKK-----------------NNNIPDWYI 1255

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD--------- 797
             +  ++   F      K+HA AY +++ + AW K +YPV +  +  ++  D         
Sbjct: 1256 PSCLKIKYMFP-----KAHATAYILMALRIAWFKVYYPVIYYTSYFSVRADLFDLVAMSH 1310

Query: 798  -------NVEKIKKFCQDAR-----------------QFNIQIMPPSVN-TPCVDFK-VG 831
                    ++KI+    DA                  +  I+I    VN +  ++FK + 
Sbjct: 1311 GKNSVKAAIKKIQDQGNDASAKDKSLLTVLEIANECLERGIKIKMVDVNESEALNFKIID 1370

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            D+ I     A+ G+G   A+ I+ A A++ F S ED  +R    K+++ +++ L   G L
Sbjct: 1371 DHTILAPFNAVPGLGDNAAKQIVAARAEQKFLSKEDLRTR---GKVSQTIMDYLEVNGVL 1427

Query: 892  D 892
            +
Sbjct: 1428 E 1428


>gi|257876620|ref|ZP_05656273.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
 gi|257810786|gb|EEV39606.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
          Length = 1449

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 156/798 (19%), Positives = 285/798 (35%), Gaps = 214/798 (26%)

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL-PE 269
            +VAT N+ +L+EED     VL+   +S   +        PD + +   EM++ F  L PE
Sbjct: 734  VVATGNAHYLNEEDAIYRKVLI---NSMGGANPLNRHSLPDVHFRTTDEMLTAFQFLGPE 790

Query: 270  ALENTV-----EIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
            A +  V     +IA  C  ++ V    + P +P   E+E  D+      EL    +  + 
Sbjct: 791  AAKEIVVTNPNKIADLCEKVIPVKDDLYTPKIPG-SEQEITDLSYNRAKELYGDPLPEI- 848

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                              +RL  EL+ I    FS  +LI    +  + ++   VG  RGS
Sbjct: 849  ----------------VEKRLKKELDSIIGNGFSVIYLISQKLVHKSNEDGYLVG-SRGS 891

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S  A    IT+++PL                                          
Sbjct: 892  VGSSFVATMTGITEVNPLAPHYYCPDCQYSEFYEDGSYGSGYDMPEKKCPKCGTRLNKDG 951

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA-- 457
              + FE FL      +PD D++F  + + E   Y +  +G E V +  T G++  K A  
Sbjct: 952  HDIPFETFLGFHGDKVPDIDLNFSGEYQPEAHNYTKVLFGEEYVYRAGTIGTVADKTAFG 1011

Query: 458  -LRDVGRALQMPY--SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
             ++   R   + Y  ++VDRL K                                     
Sbjct: 1012 FVKGFERDHNLHYRAAEVDRLAK------------------------------------- 1034

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
                 G+ R    H  GI++        +P Y DV    P+             T F+  
Sbjct: 1035 --GATGVKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQNAEWKTTHFDFH 1084

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------- 612
             I    ++K D LG    T+++   D        +D   IP DD E   +          
Sbjct: 1085 SIHD-NILKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMRIFGGTDVLGVT 1138

Query: 613  -----TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
                 +  GTLGI +  +  +R  L+   P    +++ +  L     +          N 
Sbjct: 1139 EEQIYSKTGTLGIPEFGTRFVRGMLDQTHPSTFAELLQISGLSHGTDV-------WLGNA 1191

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E I      +  ++     +++Y    +  A L  G +    + +R+    KI +++  
Sbjct: 1192 EELIRRGDASLAEVIGCRDDIMVY----LIHAGLDDGMAFKIMETVRKGQWNKIPDDL-- 1245

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             ++ ++    +N + +    +  ++      Y F K+HAAAY +++ + A+ K ++P+ +
Sbjct: 1246 -RDTYLQAMRENNVPEWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILY 1299

Query: 788  LAASMTLEMDNVEKI------------------KKFCQDARQFNIQIMPPSVN------- 822
              A  ++  D+ + I                  K      ++ N+  +    N       
Sbjct: 1300 YCAYFSVRADDFDLIAMSKGKDAVKERMQEITDKGLDASTKEKNLLTVLELANEMLERGY 1359

Query: 823  ---------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                     +   +F +   ++     A+  +G   A+ I+EA  D PF S ED  +R  
Sbjct: 1360 EFGMIDLYKSDAENFVIDGKKLIAPFRAVPSLGLNVAKQIVEARKDGPFLSKEDLANR-- 1417

Query: 874  SKKLNRRVLESLVFAGAL 891
              K+++ ++E +   G L
Sbjct: 1418 -GKVSKTLIEYMTDNGVL 1434


>gi|16266063|gb|AAL16728.1|AF358675_1 putative DNA polymerase III alpha chain [Helicobacter hepaticus]
          Length = 78

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/75 (50%), Positives = 54/75 (72%)

Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
           + +YQEQVMQI Q + G+SL  AD++RRAMGKK  +EM + K+ F  GA K G ++  A 
Sbjct: 4   LFVYQEQVMQIVQRIGGFSLGGADLVRRAMGKKKLDEMLRLKKEFADGAQKQGYNRAKAE 63

Query: 748 NIFELLAKFADYGFN 762
           +++E++ KFA YGFN
Sbjct: 64  DLWEIIVKFAGYGFN 78


>gi|229019012|ref|ZP_04175854.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
 gi|229025258|ref|ZP_04181678.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
 gi|228736011|gb|EEL86586.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
 gi|228742340|gb|EEL92498.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
          Length = 1433

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 199/922 (21%), Positives = 342/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+I+ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGIIVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T E
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLE 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT ++A   S I  VH P+                +++L    + G   E
Sbjct: 782  EDKAKEIVVTNTQKVA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822  TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 881  SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKESEFFNDGSVGSGFDLPDKECPTCNVSY 940

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 941  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKILFGEDYVYRAGTIGTVAEK 1000

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1001 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1026

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1027 AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQFPADSIGAEWRTTHFDFHS 1078

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        +D   IP DD E   + +         
Sbjct: 1079 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTE 1132

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1133 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1193 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1235

Query: 725  MDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  K   + G   +   K               Y F K+HAAAY +++ + A+ K H+
Sbjct: 1236 WEEDMKNNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------ 822
             + F AA  T+  D  +VE + K     R       Q  +   P   +            
Sbjct: 1283 ALLFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATEFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    K+++ ++E L   G L
Sbjct: 1403 QR---SKVSKTIIEYLDSQGCL 1421


>gi|268319259|ref|YP_003292915.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785]
 gi|262397634|emb|CAX66648.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785]
          Length = 1432

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 161/779 (20%), Positives = 299/779 (38%), Gaps = 177/779 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT+++ ++   +     +L+A          +R +  PD +  +  EM+  FS L E
Sbjct: 724  PVVATSDAHYVEPHEAIYRKILLAAQKGN----PNRNKNLPDLHFYSTQEMLDAFSFLGE 779

Query: 270  ------ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAVAGLE 320
                   ++NT ++A     I  + + + P  IE   +E  D+   +  EL  K +  + 
Sbjct: 780  DVAKEIVIDNTNKLADHIEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKI- 838

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                               R++ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 839  ----------------VEDRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 881

Query: 381  GAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFC-----QDR 426
               S+ A    IT+++PL         ++S  FE         +PD +   C     +D 
Sbjct: 882  VGSSLVATMSGITEVNPLAPHYRCPNCKYSKFFENGEYGSGYDLPDKECPKCGTLLVKDG 941

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +D         +G ++V  I    S   +    +  R +              P++    
Sbjct: 942  QDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNYIRVM------------FGPDNSFRA 988

Query: 487  VSLQAIADDSRF---------REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--G 535
             ++  +AD + +          E  L +  +DRL   +    G+ R    H AGIV+   
Sbjct: 989  GTIATVADKTAYGYVKHYEDENELHLRNAELDRL---AAGASGVKRTTGQHPAGIVVVPD 1045

Query: 536  DRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            D  +    P+     D+ +    T F+   I    ++KFD LG    T+++     + Q 
Sbjct: 1046 DMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHD-NILKFDILGHDDPTMIR-----MLQD 1099

Query: 593  GVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPD 638
               VD   IP DD     L ++               GTLG+ +  +  +R  LE  +P 
Sbjct: 1100 LSGVDPLTIPPDDPGVMSLFSSPEILGVTPEQIQSKTGTLGVPEFGTKFVRGMLEETKPT 1159

Query: 639  CIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
               +++ +  L        G  ++++      NG  K+ ++    D ++ +    +I+ +
Sbjct: 1160 TFSELLQISGLSHGTDVWLGNAEDLI-----NNGTCKLKNVIGCRDNIMMD----LIHWD 1210

Query: 694  QVMQIA-----QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
               ++A      +  G  +S+ ++       +I ++ DK  + +I    K          
Sbjct: 1211 VKPEVAFFTMESVRHGRGISDENM-------EILKKNDKIPDWYIPSCLK---------- 1253

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD----------- 797
                      Y F K+HA AY +++ + AW K +YPV + A+  ++  D           
Sbjct: 1254 --------IKYMFPKAHATAYILMALRIAWFKVYYPVIYYASYFSVRADLFDLVAMSHGK 1305

Query: 798  -NVEKIKKFCQD---------------------ARQFNIQIMPPSVN-TPCVDFK-VGDN 833
              V+   K  QD                       +  I+I    VN +   DFK + D+
Sbjct: 1306 NTVKAAMKEIQDKGMDVSAKDKSLLTVLEIANECLERGIKIKMVDVNESEATDFKIIDDH 1365

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I     A+ G+G   A+ I+ A A++ F S ED  +R    K+++ ++E     G L+
Sbjct: 1366 TILAPFNAVPGLGDNAAKQIVAARAEQKFLSKEDLATR---GKVSQTIMEYFENNGVLE 1421


>gi|257867714|ref|ZP_05647367.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
 gi|257874041|ref|ZP_05653694.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
 gi|257801797|gb|EEV30700.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
 gi|257808205|gb|EEV37027.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
          Length = 1449

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 156/798 (19%), Positives = 285/798 (35%), Gaps = 214/798 (26%)

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL-PE 269
            +VAT N+ +L+EED     VL+   +S   +        PD + +   EM++ F  L PE
Sbjct: 734  VVATGNAHYLNEEDAIYRKVLI---NSMGGANPLNRHSLPDVHFRTTDEMLTAFQFLGPE 790

Query: 270  ALENTV-----EIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
            A +  V     +IA  C  ++ V    + P +P   E+E  D+      EL    +  + 
Sbjct: 791  AAKEIVVTNPNKIADLCEKVIPVKDDLYTPKIPG-SEQEITDLSYNRAKELYGDPLPEI- 848

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                              +RL  EL+ I    FS  +LI    +  + ++   VG  RGS
Sbjct: 849  ----------------VEKRLKKELDSIIGNGFSVIYLISQKLVHKSNEDGYLVG-SRGS 891

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S  A    IT+++PL                                          
Sbjct: 892  VGSSFVATMTGITEVNPLAPHYYCPDCQYSEFYEDGSYGSGYDMPEKKCPKCGTRLNKDG 951

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA-- 457
              + FE FL      +PD D++F  + + E   Y +  +G E V +  T G++  K A  
Sbjct: 952  HDIPFETFLGFHGDKVPDIDLNFSGEYQPEAHNYTKVLFGEEYVYRAGTIGTVADKTAFG 1011

Query: 458  -LRDVGRALQMPY--SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
             ++   R   + Y  ++VDRL K                                     
Sbjct: 1012 FVKGFERDHNLHYRAAEVDRLAK------------------------------------- 1034

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
                 G+ R    H  GI++        +P Y DV    P+             T F+  
Sbjct: 1035 --GATGVKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQNAEWKTTHFDFH 1084

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------- 612
             I    ++K D LG    T+++   D        +D   IP DD E   +          
Sbjct: 1085 SIHD-NILKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMRIFGGTDVLGVT 1138

Query: 613  -----TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
                 +  GTLGI +  +  +R  L+   P    +++ +  L     +          N 
Sbjct: 1139 EEQIYSKTGTLGIPEFGTRFVRGMLDQTHPSTFAELLQISGLSHGTDV-------WLGNA 1191

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E I      +  ++     +++Y    +  A L  G +    + +R+    KI +++  
Sbjct: 1192 EELIRRGDASLAEVIGCRDDIMVY----LIHAGLDDGMAFKIMETVRKGQWNKIPDDL-- 1245

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             ++ ++    +N + +    +  ++      Y F K+HAAAY +++ + A+ K ++P+ +
Sbjct: 1246 -RDTYLQAMRENNVPEWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILY 1299

Query: 788  LAASMTLEMDNVEKI------------------KKFCQDARQFNIQIMPPSVN------- 822
              A  ++  D+ + I                  K      ++ N+  +    N       
Sbjct: 1300 YCAYFSVRADDFDLIAMSKGKDAVKERMQEITDKGLDASTKEKNLLTVLELANEMLERGY 1359

Query: 823  ---------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                     +   +F +   ++     A+  +G   A+ I+EA  D PF S ED  +R  
Sbjct: 1360 EFGMIDLYKSDAENFVIDGKKLIAPFRAVPSLGLNVAKQIVEARKDGPFLSKEDLANR-- 1417

Query: 874  SKKLNRRVLESLVFAGAL 891
              K+++ ++E +   G L
Sbjct: 1418 -GKVSKTLIEYMTDNGVL 1434


>gi|194015013|ref|ZP_03053630.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            pumilus ATCC 7061]
 gi|194014039|gb|EDW23604.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            pumilus ATCC 7061]
          Length = 1437

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 168/808 (20%), Positives = 286/808 (35%), Gaps = 208/808 (25%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKN 256
            + +V+L      P+VAT N  +L +ED     +L++    +  +++ + P+V    + + 
Sbjct: 718  TNIVKLGEKLNKPVVATGNVHYLHQEDKIYRKILISSQGGANPLNRHELPKV----HFRT 773

Query: 257  RSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
              EM+  FS L E  A E  V   ++ S +++   PI                +++L   
Sbjct: 774  TDEMLEAFSFLGEEKAKEIVVTNTKKVSEMVESIKPI----------------KDDLYTP 817

Query: 315  AVAGL--EVRLAQGAIAKGYHAQDY----RQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             + G   EVR     +A+  +  D       R++ EL  I    F+  +LI    ++ + 
Sbjct: 818  KIEGADEEVREMSYQMARSIYGDDLPKIVEDRIEKELKSIIGHGFAVIYLISHKLVKKSL 877

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------------- 399
             +   VG  RGS   S+ A    IT+++PL                              
Sbjct: 878  DDGYLVG-SRGSVGSSLVATLTEITEVNPLAPHYVCPSCKHSEFFNDGSVGSGFDLPDKD 936

Query: 400  ------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                          + FE FL      +PD D++F  + +     Y +  +G E V +  
Sbjct: 937  CPECGTPYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPIAHNYTKELFGEEYVYRAG 996

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G++  K A           Y  V                 +  A D       +    
Sbjct: 997  TIGTVAEKTA-----------YGYV-----------------KGYAGDHNLH---MRGAE 1025

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR-------------SDLP 554
            +DRL+   Q   G+ R    H  GI++        VP Y D+              SD  
Sbjct: 1026 IDRLV---QGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFSPIQFPADATGSDWK 1074

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-- 612
             T F+   I    L+K D LG    T+++   D        +D   IP DD E   +   
Sbjct: 1075 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFQG 1128

Query: 613  ------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                           GTLGI +  +  +RQ LE  +P    +++ +  L     +     
Sbjct: 1129 TEPLGVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHGTDV----- 1183

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                 N +E       LI     E   VI  ++ +M +  +  G        L  ++  K
Sbjct: 1184 --WLGNAQE-------LIHNKTCELSEVIGCRDDIM-VYLIYQG--------LEPSLAFK 1225

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I E + K K   +    +  +      N +    K   Y F K+HAAAY +++ + A+ K
Sbjct: 1226 IMESVRKGKG--LPPEWEEEMKNNNVPNWYIDSCKKIKYMFPKAHAAAYVLMAVRIAYFK 1283

Query: 781  THYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVN--------- 822
             H+ + + AA  T+  D+ +          I+    D     +   P   N         
Sbjct: 1284 VHHALLYYAAYFTVRADDFDIETMTKGSNAIRAVMDDINSKGLDASPKEKNLLTVLELAL 1343

Query: 823  ----------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
                            +   +F +  + +     +I G+GT  A +I+ A  D  F S E
Sbjct: 1344 EMCERGYHFKKVDLYRSSATEFIIDGDGLIPPFNSIPGLGTNVALNIVRARQDGEFLSKE 1403

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCF 894
            D   R    K+++ +LE L   G L+  
Sbjct: 1404 DLQKR---GKVSKTILEYLDRQGCLEAL 1428


>gi|153854163|ref|ZP_01995471.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
 gi|149753212|gb|EDM63143.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
          Length = 1513

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 160/801 (19%), Positives = 290/801 (36%), Gaps = 180/801 (22%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++V L      P+V T +  F++ ED     ++MA         +      P  YL+   
Sbjct: 771  KIVALGERFNKPVVGTCDVHFMNPEDEVYRRIIMAGKGFGDADNQ------PPLYLRTTD 824

Query: 259  EMVSIFSDLPEA------LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            EM+  F  L  A      +EN V+IA     I     P+ P     +C  +  + +  LR
Sbjct: 825  EMLEEFEYLGSAKAREIVIENPVKIAEMVEKI----TPVRP----DKCPPVIPDSDKMLR 876

Query: 313  ----NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
                NKA +     L +             +RL+ ELN I    F+  ++I    +  + 
Sbjct: 877  DICYNKAHSMYGENLPEIVT----------ERLERELNSIISNGFAVMYIIAQKLVWKSV 926

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------------- 399
            ++   VG  RGS   S  A    IT+++PL                              
Sbjct: 927  EDGYLVG-SRGSVGSSFVATMAGITEVNPLSPHYYCKKCHYSDFDSEEVRKFAGGCGWDM 985

Query: 400  ----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                            F + FE FL       PD D++F  D +    +Y +  +G  + 
Sbjct: 986  PDRVCPVCGEKLIKDGFDIPFETFLGFKGNKEPDIDLNFSGDYQSNAHKYTEVIFGAGQT 1045

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
             +  T G+L  K A   V    +  + Q  R C+                          
Sbjct: 1046 FRAGTVGTLADKTAFGYVKNYYE-EHGQGKRKCE-------------------------- 1078

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY-------RDVRSDLPVT 556
                +DR++   Q   G+ R    H  GI++   PL + +  +        D+ +D+  T
Sbjct: 1079 ----IDRIV---QGCTGIRRSTGQHPGGIIV--LPLGEEINSFTPVQHPANDMTTDIVTT 1129

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---------KVDLSLIPFDDHE 607
             F+   I+   L+K D LG    T+++   ++++   +         + D + IP DD  
Sbjct: 1130 HFDYHSIDH-NLLKLDILGHDDPTMIKTLEEYISSPAMDNEYNETDNRFDATKIPLDDPG 1188

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
               L      LGI   +  G      G+     + +I +V   +P  I +++  +   +G
Sbjct: 1189 VISLFHDTSALGIKPDDIGGCPVGCLGIPEFGTDFVIQMVVDTKPNTISDLIRISGLSHG 1248

Query: 668  KEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +  + +   LI          I  ++ +M         S     ++ R     + +   
Sbjct: 1249 TDVWLNNAQELIRSGKATISTAICTRDDIMTYLINKGMDSEESFTIMERVRKGTVAKGKC 1308

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K+   F    +++ +      +  ++      Y F K+HAAAY +++Y+ A+ K +YP+ 
Sbjct: 1309 KEWPEFKKDMAEHNVPDWYVWSCEQI-----KYMFPKAHAAAYVMMAYRIAYCKINYPLA 1363

Query: 787  FLAASMTLEMD---------NVEKIKKFCQD--------------------------ARQ 811
            +  A   +  D           EK++ +  D                          AR 
Sbjct: 1364 YYGAYFGIRADAFSYEIMCQGKEKLQYYIDDYNRRSATLSKKEQDTMKDMKIVQEMYARG 1423

Query: 812  FNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
            F  +  P  +       F + + ++   L++I G+G   A  + EAS D  + SL+DF  
Sbjct: 1424 FEFE--PLDIYKAQATKFLIVNGKLMPPLSSIDGMGEKAAEAVAEASKDGTYLSLDDFRQ 1481

Query: 871  RVDSKKLNRRVLESLVFAGAL 891
            R    K ++ V++++V  G L
Sbjct: 1482 RT---KASKTVIDTMVELGIL 1499


>gi|260662302|ref|ZP_05863198.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            fermentum 28-3-CHN]
 gi|260553685|gb|EEX26577.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            fermentum 28-3-CHN]
          Length = 1447

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 194/933 (20%), Positives = 346/933 (37%), Gaps = 224/933 (24%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  MT+ G         + +L +T  G + L +LVS +  ++   +  RI  S L     
Sbjct: 603  NKHMTDNGAYRHARPFHVTILAATQAGLKNLYKLVS-LSNVEYFARVPRIPRSVLNRY-R 660

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV- 200
            EGL++ T  + G +  A        A KRL  F        Y+ +Q    Y    ES V 
Sbjct: 661  EGLLLGTACADGEVFTAMMQKGYGEA-KRLAEFYD------YIEVQPKPNYAPLLESGVI 713

Query: 201  -------------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRP 246
                         V+L      P+VAT ++ +++ ED     +L+ +   +  +++ +RP
Sbjct: 714  TDQAHLEDILKNMVKLGSALNKPVVATGDAHYINPEDAIYRKILINSQGGANPLNRTERP 773

Query: 247  RVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCS-FILQVHAPILPRFIEKE 299
             V    + +   EM+ +FS L E       ++NT  +A      I  V A + P  +E  
Sbjct: 774  DV----HFRTTDEMLDLFSFLGEDVAKQIVVDNTHLVADMVDDGIRPVKAGLYPPHMEGA 829

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA----QDYRQRLDFELNVIARMKFSG 355
                    E E++++              AK ++     Q  + R++ ELN I    FS 
Sbjct: 830  --------EQEIQDRT----------WTTAKEWYGDPLPQLVKDRVELELNSIVSNGFSV 871

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFS----- 401
            ++LI    +  + K+   VG  RGS   SV A    IT+++PL         ++S     
Sbjct: 872  HYLIAQRLVAKSTKDGYLVG-SRGSVGSSVVATLSGITEVNPLPPHYRCPNCQYSHFYTK 930

Query: 402  ---------------------------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                       + F+ FL      +PD D++F  D +     Y+
Sbjct: 931  GEYSSGFDLPDKDCPKCGTKMIGDGHDIPFQTFLGFKGNKVPDIDLNFSGDYQPIAHNYM 990

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            +  +G   V +  T G++  K A           Y  V                      
Sbjct: 991  KVLFGENNVYRAGTIGTVADKTA-----------YGYVKAY------------------- 1020

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDV 549
              R +E +      DRL   +    G+ R    H AGI+I   D  +    P+     D 
Sbjct: 1021 -ERDKEVQFRGAEEDRL---ASGATGVKRTTGQHPAGIIIVPDDMEIYDFTPVQYPADDQ 1076

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
             +    T F+   I    ++K D LG    T+++   D        ++   IP DD    
Sbjct: 1077 SAAWETTHFDFHSIHD-NILKMDILGHDDPTMIRALQDLSG-----INPQSIPMDDPGVM 1130

Query: 610  HLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             L ++               GTLG+ +  +  +R  LE   P     ++ +  L     +
Sbjct: 1131 SLFSSPEALGVTEEQINSKTGTLGLPEFGTRFVRGMLEDTHPQNYSQLLQISGLSHGTGV 1190

Query: 656  --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              DN       KNG   I ++    D ++ +   +I Y         L S  S    + +
Sbjct: 1191 WLDN--AQELIKNGTATIANVIGCRDNIMTD---LIHY--------GLDSETSFQVMEHV 1237

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+  GK I EE  ++        ++ G+ +    +  ++      Y F ++HAAAY +++
Sbjct: 1238 RK--GKGIPEEWQEK-------MTEVGVPQWYLDSCLKI-----KYMFPRAHAAAYVLMA 1283

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIK-KFCQDARQFNIQIMPPSVN---------- 822
             + A+ K ++P+ + AA  ++  D+ + +     ++A +  +Q +    N          
Sbjct: 1284 LRIAYFKVYFPLVYYAAFFSVRADDFDVVAMSHGKEAVKSAMQAITSKGNEATAKEKSLL 1343

Query: 823  -----------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                                   +   D+ +  + +     AI G+G   A+ I+ A  +
Sbjct: 1344 TILELANEMLERGFKFKMVDIERSDATDWLIDGDTLIAPFRAIPGLGINVAKQIVAAREE 1403

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            KPF S +D   R    K+++ ++E +     LD
Sbjct: 1404 KPFLSKQDLSER---GKVSKTLIEFMTVNHVLD 1433


>gi|13357937|ref|NP_078211.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC
            700970]
 gi|170762156|ref|YP_001752460.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|13959349|sp|Q9PQB4|DPO3_UREPA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|11279168|pir||C82898 DNA polymerase III alpha chain 1 UU377 [imported] - Ureaplasma
            urealyticum
 gi|6899360|gb|AAF30786.1|AE002135_2 DNA polymerase III alpha chain 1 [Ureaplasma parvum serovar 3 str.
            ATCC 700970]
 gi|168827733|gb|ACA32995.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 3 str. ATCC 27815]
          Length = 1442

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 146/659 (22%), Positives = 240/659 (36%), Gaps = 174/659 (26%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             QR+  ELN I +  FS  + I    ++ + ++   VG  RGS   S+ A  L ITD++P
Sbjct: 843  EQRIKKELNSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGSSLVATFLNITDVNP 901

Query: 398  LRFSLL---------------------------------------FERFLNPDRMSMPDF 418
            L    L                                       FE FL  D   +PD 
Sbjct: 902  LTPHYLCPNCKKCEFITNADDGFDLAPKSCEQCQTPMLTDGHNIPFETFLGFDGDKVPDI 961

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F    +     ++++ +G     +  T G++   +A   V +  +            
Sbjct: 962  DLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAQTSAENTVKKYFE------------ 1009

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                             +RF E ++   S   L    QK     R    H  GI+I  + 
Sbjct: 1010 -----------------NRFNENKIIRDSTVSLY--VQKCIDSKRTTGQHPGGIIIVPKE 1050

Query: 539  LS--QLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF--LAQ 591
             S     P      D+      T F  +++  + L+KFD LG    T+L+   D+  + +
Sbjct: 1051 YSIWDFSPYNFPANDINETWKTTHFAFEYLHDS-LLKFDILGHDNPTILKLLKDYTGIDE 1109

Query: 592  RGVKV--DLSLIPFDDHETYH------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            R V +   L +  F D    +      L  T G + I +  +  +R  L   +P    D+
Sbjct: 1110 RDVPMYDPLVMKSFSDISALNIKPSDVLNETTGAISIPEFGTRFVRGMLVDTKPKSFADL 1169

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            I +  L     +             + ++    L+  ++     ++ Y   + Q  +  +
Sbjct: 1170 IRISGLSHGESV--------WLGNAQSLIKSGKLLKDVIACRDDIMTYL--IRQNVEPKT 1219

Query: 704  GYSLSEADVLRRAMGKKIKEEMD------KQKERFISGASKNGISKTIAVNIFELLAKFA 757
             + + E DV +   GKKIK E        K  E +I  A+K                   
Sbjct: 1220 AFLIME-DVRK---GKKIKPEHQIILKELKVPEWYIESANK------------------I 1257

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQD 808
             Y F K+HA AY + +++ AW K +YP+E+ AA  ++  DN          E I+K   D
Sbjct: 1258 KYMFPKAHATAYVMHAWKFAWYKIYYPLEYYAAFFSVRADNFDLFVINQGKEFIEKTYND 1317

Query: 809  --------------------------------ARQF---NIQIMPPSVNTPCVDFKVGDN 833
                                            AR F   NI I      +  +D +  +N
Sbjct: 1318 IEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKE--NN 1375

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I     AI+G+G T A  I+EA   K F ++ED  +R    K++R  L++L   G LD
Sbjct: 1376 AIIPPFIAIQGLGETVANSIIEARNQKVFSTIEDLKNRT---KISRTDLKNLRVLGVLD 1431


>gi|329121280|ref|ZP_08249907.1| DNA-directed DNA polymerase III alpha subunit [Dialister
            micraerophilus DSM 19965]
 gi|327470214|gb|EGF15677.1| DNA-directed DNA polymerase III alpha subunit [Dialister
            micraerophilus DSM 19965]
          Length = 1207

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 194/998 (19%), Positives = 373/998 (37%), Gaps = 210/998 (21%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  SL +G +    I+        PA+AITD + +  A    Q+  A   Q +I
Sbjct: 276  VELHLHTKMSL-DGLIDNEEIIKTAKEWNHPAVAITD-HGVIQAFPKIQEIAAKYKQKVI 333

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
                   +++  +  +  +  +     I++L     G + L  LV+  +L    K+ + +
Sbjct: 334  YGMEGYMIENIPEDVDADRQKYN---HIIVLAKNMTGMRNLYRLVTISHLKFFRKRPL-M 389

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              + L+E   EGL+  T   +G   RA     ++ +++ L+   K + D L V    +  
Sbjct: 390  PKAILEEF-HEGLLYGTACVAGEFFRAVL---NKESDEELIKRAKFY-DYLEVQPVGNNA 444

Query: 192  Y----DRYRE-----------SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            +    D+Y +            +++++     +P+ AT+++ ++ +E     ++L+++  
Sbjct: 445  FMIKDDKYADVNSVEDLQKLNKRIIEIGEKANIPVCATSDAHYMFKEQSRKRELLLSMWE 504

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAP 290
             +  ++   P      Y++   EM+  F+ LPE       + NT +IA  C +I     P
Sbjct: 505  KSGEAESHPPV-----YVRTTKEMLEDFNYLPEEKAKEIVITNTRKIADSCEWI----EP 555

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFE 344
            +               EE +  N  ++G + +L        Y        +  + RL+ E
Sbjct: 556  LA--------------EEWKSYNPKISGADDKLVDMCYENAYRIYGNPLPKIVKDRLELE 601

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----- 399
            L  I R  +   + I    ++ +      VG  RGS   S  A    IT+++PL      
Sbjct: 602  LTPIIRHGYGVLYYIAHKLVKHSNDRGYLVG-SRGSVGSSFVATMAQITEVNPLEPHYVC 660

Query: 400  ------------------------------------FSLLFERFLNPDRMSMPDFDIDFC 423
                                                 ++ F  FL  D   +PD D++F 
Sbjct: 661  LNCHWSHFYTDNSVGCGFDLPNKKCPKCGNELNKDGHNIPFAVFLGFDGDKVPDIDLNFS 720

Query: 424  Q-DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D +    +Y +  +G + V +  T   +Q + A       L   Y++           
Sbjct: 721  SGDDQAVAHKYTEELFGRDNVFRAGTIAGIQDRTAF-----GLVKKYAEN---------- 765

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR----- 537
                            R+  + D  ++ L   S  + G+ R    H AGI++  R     
Sbjct: 766  ----------------RQLNVNDIFIESL---SSDIVGVKRTTGQHPAGIMVCPRDMDIH 806

Query: 538  ---PLSQLVPMYRDVRSD---LP---VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
               PL        +   D   +P    T F+   I    ++K D LG     +++     
Sbjct: 807  NFTPLQYAANKKHEKDEDGNIIPGTITTHFDYHSI-SGRMLKLDILGHDDPKIIR----- 860

Query: 589  LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLES----SGMRQALEGMQPDCIED 642
            + Q    VD   IPF++ +   L      LGI   QLE      G++    G+       
Sbjct: 861  MLQDITGVDPLHIPFNEQKVLSLFQNTDALGISSEQLEKVIGHKGVKVGAIGLPEYGTPF 920

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +  ++   +P     +V  +   +G +  ++    LI     + +  I  ++ +M     
Sbjct: 921  VRVMLEDTKPKNFSELVRISGFSHGTDVWLNNAKDLITSGKVKLEEAISTRDDIMNYLMK 980

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                +L     +      K  E+ +   E++I  A+            F    K   Y F
Sbjct: 981  HGVDALVSFKTMENVRKGKGLEKGNSNNEKYIREAN--------VPEWFIQSCKKISYLF 1032

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD---NVEKIKKFCQDARQFNIQIM- 817
             +SHA AY +++++ AW K +YP+ F A+  T+  +   N   I K  +  R+  ++I+ 
Sbjct: 1033 PRSHAVAYVMMAFRIAWFKVYYPLAFYASYFTIRAEGSFNSLVILKGLEAQRKEILRILS 1092

Query: 818  ---PPSVN---------------------------TPCVDFKVGDNRIYYSLAAIKGVGT 847
               P +V+                           +   +FK+ D ++      I  +G 
Sbjct: 1093 LERPTNVDKENATVIEVAAEMYLRGYEFLPISLTESDAYEFKIVDGKLLPPFNCIPALGN 1152

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
              A+ I++A  + PF S ED   R    K+++ V+E++
Sbjct: 1153 QVAKEIVQAREEAPFTSKEDLKKR---GKVSQSVIETM 1187


>gi|227514713|ref|ZP_03944762.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
 gi|227086917|gb|EEI22229.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
          Length = 1447

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 194/933 (20%), Positives = 346/933 (37%), Gaps = 224/933 (24%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  MT+ G         + +L +T  G + L +LVS +  ++   +  RI  S L     
Sbjct: 603  NKHMTDNGAYRHARPFHVTILAATQAGLKNLYKLVS-LSNVEYFARVPRIPRSVLNRY-R 660

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV- 200
            EGL++ T  + G +  A        A KRL  F        Y+ +Q    Y    ES V 
Sbjct: 661  EGLLLGTACADGEVFTAMMQKGYGEA-KRLAEFYD------YIEVQPKPNYAPLLESGVI 713

Query: 201  -------------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRP 246
                         V+L      P+VAT ++ +++ ED     +L+ +   +  +++ +RP
Sbjct: 714  TDQAHLEDILKNMVKLGSALNKPVVATGDAHYINPEDAIYRKILINSQGGANPLNRTERP 773

Query: 247  RVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCS-FILQVHAPILPRFIEKE 299
             V    + +   EM+ +FS L E       ++NT  +A      I  V A + P  +E  
Sbjct: 774  DV----HFRTTDEMLDLFSFLGEDVAKQIVVDNTHLVADMVDDGIRPVKAGLYPPHMEGA 829

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA----QDYRQRLDFELNVIARMKFSG 355
                    E E++++              AK ++     Q  + R++ ELN I    FS 
Sbjct: 830  --------EQEIQDRT----------WTTAKEWYGDPLPQLVKDRVELELNSIVSNGFSV 871

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFS----- 401
            ++LI    +  + K+   VG  RGS   SV A    IT+++PL         ++S     
Sbjct: 872  HYLIAQRLVAKSTKDGYLVG-SRGSVGSSVVATLSGITEVNPLPPHYRCPNCQYSHFYTK 930

Query: 402  ---------------------------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                       + F+ FL      +PD D++F  D +     Y+
Sbjct: 931  GEYSSGFDLPDKDCPKCGTKMIGDGHDIPFQTFLGFKGNKVPDIDLNFSGDYQPIAHNYM 990

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            +  +G   V +  T G++  K A           Y  V                      
Sbjct: 991  KVLFGENNVYRAGTIGTVADKTA-----------YGYVKAY------------------- 1020

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDV 549
              R +E +      DRL   +    G+ R    H AGI+I   D  +    P+     D 
Sbjct: 1021 -ERDKEVQFRGAEEDRL---ASGATGVKRTTGQHPAGIIIVPDDMEIYDFTPVQYPADDQ 1076

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
             +    T F+   I    ++K D LG    T+++   D        ++   IP DD    
Sbjct: 1077 SAAWETTHFDFHSIHD-NILKMDILGHDDPTMIRALQDLSG-----INPQSIPMDDPGVM 1130

Query: 610  HLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             L ++               GTLG+ +  +  +R  LE   P     ++ +  L     +
Sbjct: 1131 SLFSSPEALGVTEEQINSKTGTLGLPEFGTRFVRGMLEDTHPQNYSQLLQISGLSHGTGV 1190

Query: 656  --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              DN       KNG   I ++    D ++ +   +I Y         L S  S    + +
Sbjct: 1191 WLDN--AQELIKNGTATIANVIGCRDNIMTD---LIHY--------GLDSETSFQVMEHV 1237

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+  GK I EE  ++        ++ G+ +    +  ++      Y F ++HAAAY +++
Sbjct: 1238 RK--GKGIPEEWQEK-------MTEVGVPQWYLDSCLKI-----KYMFPRAHAAAYVLMA 1283

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIK-KFCQDARQFNIQIMPPSVN---------- 822
             + A+ K ++P+ + AA  ++  D+ + +     ++A +  +Q +    N          
Sbjct: 1284 LRIAYFKVYFPLVYYAAFFSVRADDFDVVAMSHGKEAVKSAMQAITSKGNEATAKEKSLL 1343

Query: 823  -----------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                                   +   D+ +  + +     AI G+G   A+ I+ A  +
Sbjct: 1344 TILELANEMLERGFKFKMVDIERSDATDWLIDGDTLIAPFRAIPGLGINVAKQIVAAREE 1403

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            KPF S +D   R    K+++ ++E +     LD
Sbjct: 1404 KPFLSKQDLSER---GKVSKTLIEFMTVNHVLD 1433


>gi|325957051|ref|YP_004292463.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC]
 gi|325333616|gb|ADZ07524.1| DNA polymerase III, alpha subunit [Lactobacillus acidophilus 30SC]
 gi|327183774|gb|AEA32221.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL 1118]
          Length = 1435

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 161/767 (20%), Positives = 286/767 (37%), Gaps = 168/767 (21%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKN 256
            S + +L      P+VAT +S ++     E HD +   +  S   S  +R +  PD +  +
Sbjct: 715  SNIYKLGKELNKPVVATGDSHYV-----EPHDAIYRTILISAQRSNPNRNKPQPDLHFYS 769

Query: 257  RSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK---EE 307
              EM+  FS L E       +ENT +IA   S I  +   + P  I    ++++K   ++
Sbjct: 770  TQEMLDAFSFLGEDIAKEIVIENTNKIADEISEIQPIKDGLYPPHIAHADEEMKKLTYDK 829

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL    +  +                  + R+D ELN I    ++  +LI    +  +
Sbjct: 830  AYELYGNPLPKI-----------------VKDRIDLELNSIISNGYAVIYLISQRLVAKS 872

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDF 418
             K+   VG  RGS   S+ A    IT+++PL         ++S  FE         +PD 
Sbjct: 873  NKDGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPKCKYSQFFENGEYGSGFDLPDK 931

Query: 419  DIDFC-----QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            +   C     +D +D         +G ++V  I    S   +    +  R +        
Sbjct: 932  NCPKCGTPLVKDGQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM-------- 982

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRF---------REARLADPSVDRLLEISQKLEGLYRH 524
                  P++     ++  +AD + +         R  +L +  +DRL   +  + G+ R 
Sbjct: 983  ----FGPDNSYRAGTIATVADKTAYGYAKHFDEERNLKLRNAELDRL---ASGIRGVKRT 1035

Query: 525  ASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H AGIV+   D  +    P+     DV +   +T ++   I    ++KFD LG    
Sbjct: 1036 TGQHPAGIVVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDP 1094

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLES 625
            T+++   D        +D   IP DD     L ++               GTLG+ +  +
Sbjct: 1095 TMIRHLQDLSG-----IDPLTIPPDDPGVMSLFSSTKALGVTPEQIGSQTGTLGVPEFGT 1149

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
              +R  LE  +P    +++ +  L        G  +++V      NG  K+  +    D 
Sbjct: 1150 RFVRGMLEETKPTTFAELLQISGLSHGTDVWLGNAEDLV-----NNGTCKLKDVIGCRDN 1204

Query: 681  MLKETQGVIIYQEQVMQIAQ-LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
            ++ +     +  E      + +  G  +S+ ++      KKI        + +I    K 
Sbjct: 1205 IMMDLIHWGVKPEVAFSTMESVRHGRGISDENMAVLKKNKKI-------PDWYIPSCLK- 1256

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD-- 797
                               Y F K+HA AY +++ + AW K +YP  +  A  ++  D  
Sbjct: 1257 -----------------IKYMFPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLF 1299

Query: 798  ----------NVEKIKKFCQD---------------------ARQFNIQIMPPSVN-TPC 825
                       V+   K  QD                       +  I+I    ++ +  
Sbjct: 1300 DLVAMSHGKNTVKAAMKEIQDKGMDASAKDKSLLTVLEIANECLERGIKIKMVDIDQSEA 1359

Query: 826  VDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
             DFK+ D + I     A+ G+G   A+ I+ A A+K F S ED   R
Sbjct: 1360 TDFKILDKHTILAPFNAVPGLGDNAAKQIVAARAEKKFLSKEDLAKR 1406


>gi|167037626|ref|YP_001665204.1| DNA polymerase III PolC [Thermoanaerobacter pseudethanolicus ATCC
            33223]
 gi|320116041|ref|YP_004186200.1| DNA polymerase III subunit alpha [Thermoanaerobacter brockii subsp.
            finnii Ako-1]
 gi|166856460|gb|ABY94868.1| DNA polymerase III, alpha subunit [Thermoanaerobacter
            pseudethanolicus ATCC 33223]
 gi|319929132|gb|ADV79817.1| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii subsp.
            finnii Ako-1]
          Length = 1407

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 195/908 (21%), Positives = 336/908 (37%), Gaps = 207/908 (22%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            V  + +LV   +G + L E++S+  L +   ++ RI  S L     EGLI+ +    G +
Sbjct: 583  VYHVTILVKDQKGLRNLYEIISKSNL-EYFHRTPRIPKSLLIS-RREGLIIGSACEQGEV 640

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTH 207
             RA   N  +   + +++F      + +  +   +     +  +  RE   ++  L   +
Sbjct: 641  FRAIVSNLEEKKLENIISFYDYLEVQPVGNNEFLIGKGEVKSVEELREINRKIYLLGKKY 700

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
               +VAT +  FL   D     +LMA         KD  R  P  Y K   EM+  F  L
Sbjct: 701  NKLVVATGDVHFLDPWDDIYRKILMAGK-----GYKDADR-QPPLYFKTTDEMLKEFEYL 754

Query: 268  PE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
             E       ++N  +IA     +  +     P  IE          E ELR       ++
Sbjct: 755  GEEVAKEIVIDNPNKIADLVEEVKPIPDGTFPPVIEGA--------EEELR-------KL 799

Query: 322  RLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
             L +     G    +  Q RLD ELN I    ++  ++I    +  + K+   VG  RGS
Sbjct: 800  TLDKAHEIYGDPLPEIVQNRLDRELNSIINNGYAVMYIIAQKLVSKSLKDGYLVG-SRGS 858

Query: 381  GAGSVTAYALTITDIDPL-----------------------------------------R 399
               S+ A    IT+++PL                                          
Sbjct: 859  VGSSLVATMSGITEVNPLPPHYVCPNCKYSEFITDGSYGCGVDMPDKTCPHCGTLMRKDG 918

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            F + FE FL  +    PD D++F  + +    +Y +  +G   V +  T G+L  K A  
Sbjct: 919  FDIPFEVFLGFEGDKEPDIDLNFSGEYQPIAHKYTEELFGKGHVFRAGTIGTLADKTAYG 978

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V +  +                                R   +    + RL   +    
Sbjct: 979  YVKKYFEE-------------------------------RNLIVHKSEIKRL---TVGCT 1004

Query: 520  GLYRHASTHAAGIVI--GDRPLSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H  GI++   D+ +    P+        +D+  T F+   I    L+K D L
Sbjct: 1005 GVKRTTGQHPGGIMVVPKDKSIYDFTPIQHPADAEDTDVITTHFDYHSI-SGRLLKLDIL 1063

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGI 620
            G    T+++   D        ++   IP DD +T  L T+               GTLG+
Sbjct: 1064 GHDDPTVIRMLEDLTG-----INAREIPLDDKKTMSLFTSVEALGIDPEELNTPVGTLGL 1118

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +RQ L   +P    +++ +  L       ++ + N +   +E I +       
Sbjct: 1119 PEFGTKFVRQMLIDTRPTTFAELVRISGLSHGT---DVWLNNAQDIIREGIAT------- 1168

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK---ERFISGAS 737
             LKE   VI  ++ +M        Y +S+   + + +  KI E + K K   +  I    
Sbjct: 1169 -LKE---VISTRDDIML-------YLISKG--MDKKLSFKIMENVRKGKGVTQEEIEEMR 1215

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            K+G+      N F    +   Y F K+HA AY +++++ A+ K HYP  F A   T+  D
Sbjct: 1216 KHGVP-----NWFIESCQKIKYMFPKAHAVAYVIMAFRIAYFKVHYPEAFYATYFTVRAD 1270

Query: 798  NV---------EKIKKFCQ--DARQFNIQIMPPSVNT----------------------- 823
            +          + IK   +  +A+  N      S+ T                       
Sbjct: 1271 DFNLDIVLKGKDSIKNAIKEIEAKGNNASPKEKSLLTVLEVALEMYLRGFKFINVDLYKS 1330

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
              V F + +  +   L +++GVG   A+ I +   +  F S+EDF +R    K+++ V+E
Sbjct: 1331 DAVKFFITEEGLLPPLNSLEGVGIQAAKTIAQERENGKFLSVEDFRNRT---KVSKTVIE 1387

Query: 884  SLVFAGAL 891
             L   G L
Sbjct: 1388 ILKQYGCL 1395


>gi|257463693|ref|ZP_05628083.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
 gi|317061240|ref|ZP_07925725.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
 gi|313686916|gb|EFS23751.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
          Length = 1450

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 180/895 (20%), Positives = 340/895 (37%), Gaps = 182/895 (20%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            +I+LL    +G + L  LVS  +L   G +  R+  S L++   EGL++    +   I+ 
Sbjct: 613  NIMLLAKNRQGLENLNRLVSDAHLYHFGNRKPRVLKSTLKKY-REGLLVGCSLTGHSIND 671

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY--------------DRYRESQ---V 200
            +  F+         +  K  F D  Y+ L   + Y              + Y E+     
Sbjct: 672  SELFHDYSTGNIDRIPEKISFYD--YIELLPRQAYAENIEYNGTGLISGNSYIEAMNQYF 729

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
              LA    + +  ++N  +L  E+ +   +L+    S +V      +     Y ++  E+
Sbjct: 730  YSLAKEKGILVTGSSNVHYLDPEEAKIRTILLY--GSGMVHGAKAYKTDNGFYFRSTGEL 787

Query: 261  VSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
            +  FS L E       +ENT +I      I  +     P  IE   + ++     E+  +
Sbjct: 788  LKEFSYLGEEVAKEIVVENTNKIVEEVEVIKPIPDGFYPPSIENAEETVR-----EMTYE 842

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
                +        +AK         RL+ ELN I    FS  +L     ++ +  N   V
Sbjct: 843  KAYRIYGNPLPEIVAK---------RLERELNAIIGNGFSVLYLSAQKLVKKSLDNGYLV 893

Query: 375  GPGRGSGAGSVTAYALTITDIDPLR----------------------------------- 399
            G  RGS   S+ A+ + IT+++ L                                    
Sbjct: 894  G-SRGSVGSSLVAFMMGITEVNALYPHYICTNPDCKHSEFIEREGVGIDLPEKRCPKCNQ 952

Query: 400  ------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
                  +S+ FE F+  +   +PD D++F  + + E+ RY +  +G E V +  T  +L 
Sbjct: 953  IYKRDGYSIPFEVFMGFNGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLA 1012

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             K A   V +  +               D    +S QA                   ++ 
Sbjct: 1013 EKNAAGYVRKYFE---------------DNGIAIS-QA------------------EVVR 1038

Query: 514  ISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGL 568
            +++K EG  +    H  G+V+   D  + +  P+ +   D  SD   T ++   +++  L
Sbjct: 1039 LAKKCEGAKKTTGQHPGGMVVVPSDHNIFEFCPVQKPANDEMSDSITTHYDYHVMDEQ-L 1097

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            +K D LG    T ++     L Q    +D+  IP  D +T  + +   +LG+   E  G 
Sbjct: 1098 VKLDILGHDDPTTIK-----LLQEYTGLDIYEIPLSDPDTLKIFSGTESLGV-TAEQIGS 1151

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK-IVSIHPLIDPMLKETQG 687
              A  G+       +  ++   RP     +V  +   +G +  + +    I         
Sbjct: 1152 EVATFGIPEFGTPFVRQMLLDTRPTTFAELVRISGLSHGTDVWLNNAQEFIRQKQATLSE 1211

Query: 688  VIIYQEQVMQ--IAQ-LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            VI  ++ +M   I Q +  G +    + +R+    K  E   K  +       K+   ++
Sbjct: 1212 VITVRDDIMNYLIDQGIEKGTAFKIMEFVRKGKPSKDPEGWKKYSDLMKEKHVKDWYIES 1271

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN------ 798
                      +   Y F K HA AY +++ + A+ K HYP+ F AA ++ + ++      
Sbjct: 1272 ---------CRRIKYMFPKGHAVAYVMMAIRIAYFKVHYPLAFYAAYLSRKAEDFNFETL 1322

Query: 799  ---------VEKIKK-------------FCQ-----DARQFNIQIMPPSV-NTPCVDFKV 830
                     +E++ K              C+     +AR  +I+++P  + ++    F V
Sbjct: 1323 GTPERARNRLEELSKEGKLDVKKKAEQALCEVMIEMEAR--HIELLPIDLYHSAGKKFLV 1380

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
              ++I   L A+ G+G     +I+E    + F S+EDF  R    K+++ ++E +
Sbjct: 1381 EGDKIRVPLIALAGLGGAVIDNILEERQKESFISVEDFKKRT---KVSQTIVEKM 1432


>gi|315038577|ref|YP_004032145.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
 gi|312276710|gb|ADQ59350.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
          Length = 1435

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 161/767 (20%), Positives = 286/767 (37%), Gaps = 168/767 (21%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKN 256
            S + +L      P+VAT +S ++     E HD +   +  S   S  +R +  PD +  +
Sbjct: 715  SNIYKLGKELNKPVVATGDSHYV-----EPHDAIYRTILISAQRSNPNRNKPQPDLHFYS 769

Query: 257  RSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK---EE 307
              EM+  FS L E       +ENT +IA   S I  +   + P  I    ++++K   ++
Sbjct: 770  TQEMLDAFSFLGEDIAKEIVIENTNKIADEISEIQPIKDGLYPPHIAHADEEMKKLTYDK 829

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL    +  +                  + R+D ELN I    ++  +LI    +  +
Sbjct: 830  AYELYGNPLPKI-----------------VKDRIDLELNSIISNGYAVIYLISQRLVAKS 872

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDF 418
             K+   VG  RGS   S+ A    IT+++PL         ++S  FE         +PD 
Sbjct: 873  NKDGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPKCKYSQFFENGEYGSGFDLPDK 931

Query: 419  DIDFC-----QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            +   C     +D +D         +G ++V  I    S   +    +  R +        
Sbjct: 932  NCPKCGTPLVKDGQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM-------- 982

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRF---------REARLADPSVDRLLEISQKLEGLYRH 524
                  P++     ++  +AD + +         R  +L +  +DRL   +  + G+ R 
Sbjct: 983  ----FGPDNSYRAGTIATVADKTAYGYAKHFDEERNLKLRNAELDRL---ASGIRGVKRT 1035

Query: 525  ASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H AGIV+   D  +    P+     DV +   +T ++   I    ++KFD LG    
Sbjct: 1036 TGQHPAGIVVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDP 1094

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLES 625
            T+++   D        +D   IP DD     L ++               GTLG+ +  +
Sbjct: 1095 TMIRHLQDLSG-----IDPLTIPPDDPGVMSLFSSTKALGVTPEQIGSQTGTLGVPEFGT 1149

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
              +R  LE  +P    +++ +  L        G  +++V      NG  K+  +    D 
Sbjct: 1150 RFVRGMLEETKPTTFAELLQISGLSHGTDVWLGNAEDLV-----NNGTCKLKDVIGCRDN 1204

Query: 681  MLKETQGVIIYQEQVMQIAQ-LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
            ++ +     +  E      + +  G  +S+ ++      KKI        + +I    K 
Sbjct: 1205 IMMDLIHWGVKPEVAFSTMESVRHGRGISDENMAVLKKNKKI-------PDWYIPSCLK- 1256

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD-- 797
                               Y F K+HA AY +++ + AW K +YP  +  A  ++  D  
Sbjct: 1257 -----------------IKYMFPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLF 1299

Query: 798  ----------NVEKIKKFCQD---------------------ARQFNIQIMPPSVN-TPC 825
                       V+   K  QD                       +  I+I    ++ +  
Sbjct: 1300 DLVAMSHGKNTVKAAMKEIQDKGMDASAKDKSLLTVLEIANECLERGIKIKMVDIDQSEA 1359

Query: 826  VDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
             DFK+ D + I     A+ G+G   A+ I+ A A+K F S ED   R
Sbjct: 1360 TDFKILDKHTILAPFNAVPGLGDNAAKQIVAARAEKKFLSKEDLAKR 1406


>gi|313892597|ref|ZP_07826184.1| DNA polymerase III, alpha subunit, Gram-positive type [Dialister
            microaerophilus UPII 345-E]
 gi|313118994|gb|EFR42199.1| DNA polymerase III, alpha subunit, Gram-positive type [Dialister
            microaerophilus UPII 345-E]
          Length = 1207

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 192/998 (19%), Positives = 371/998 (37%), Gaps = 210/998 (21%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  SL +G +    I+        PA+AITD + +  A    Q+  A   Q +I
Sbjct: 276  VELHLHTKMSL-DGLIDNEEIIKTAKEWNHPAVAITD-HGVIQAFPKIQEIAAKYKQKVI 333

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
                   +++  +  +  +  +     I++L     G + L  LV+  +L    K+ + +
Sbjct: 334  YGMEGYMIENIPEDVDADRQKYN---HIIVLAKNMTGMRNLYRLVTISHLKFFRKRPL-M 389

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              + L+E   EGL+  T   +G   RA     ++ +++ L+   K + D L V    +  
Sbjct: 390  PKAILEEF-HEGLLYGTACVAGEFFRAVL---NKESDEELIKRAKFY-DYLEVQPVGNNA 444

Query: 192  Y----DRYRE-----------SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            +    D+Y +            +++++     +P+ AT+++ ++ +E     ++L+++  
Sbjct: 445  FMIKDDKYADVNSVEDLQRLNKRIIEIGEKANIPVCATSDAHYMFKEQSRKRELLLSMWE 504

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAP 290
             +  ++   P      Y++   EM+  F+ LPE       + NT +IA  C +I     P
Sbjct: 505  KSGEAESHPPV-----YVRTTKEMLEDFNYLPEEKAKEIVITNTRKIADSCEWI----EP 555

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFE 344
            +               EE +  N  ++G + +L        Y        +  + RL+ E
Sbjct: 556  LA--------------EEWKSYNPKISGADDKLVDMCYENAYRIYGNPLPKIVKDRLELE 601

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----- 399
            L  I R  +   + I    ++ +      VG  RGS   S  A    IT+++PL      
Sbjct: 602  LTPIIRHGYGVLYYIAHKLVKHSNDRGYLVG-SRGSVGSSFVATMAQITEVNPLEPHYVC 660

Query: 400  ------------------------------------FSLLFERFLNPDRMSMPDFDIDFC 423
                                                 ++ F  FL  D   +PD D++F 
Sbjct: 661  LNCHWSHFYTDNSVGCGFDLPNKKCPKCGNELNKDGHNIPFAVFLGFDGDKVPDIDLNFS 720

Query: 424  Q-DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D +    +Y +  +G + V +  T   +Q + A       L   Y++           
Sbjct: 721  SGDDQAVAHKYTEELFGRDNVFRAGTIAGIQDRTAF-----GLVKKYAEN---------- 765

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR----- 537
                            R+  + D  ++ L   S  + G+ R    H AGI++  R     
Sbjct: 766  ----------------RQLNVNDIFIESL---SSDIVGVKRTTGQHPAGIMVCPRDMDIH 806

Query: 538  ---PLSQLVPMYRDVRSD---LP---VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
               PL        +   D   +P    T F+   I    ++K D LG     +++     
Sbjct: 807  NFTPLQYAANKKHEKDEDGNIIPGTITTHFDYHSI-SGRMLKLDILGHDDPKIIR----- 860

Query: 589  LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLES----SGMRQALEGMQPDCIED 642
            + Q    VD   IPF++ +   L      LGI   QLE      G++    G+       
Sbjct: 861  MLQDITGVDPLHIPFNEQKVLSLFQNTDALGISSEQLEKVIGHKGVKVGAIGLPEYGTPF 920

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +  ++   +P     +V  +   +G +  ++    LI     + +  I  ++ +M     
Sbjct: 921  VRVMLEDTKPKNFSELVRISGFSHGTDVWLNNAKDLITSGKVKLEEAISTRDDIMNYLMK 980

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                +L     +      K  E+ +   E++I  A+            F    K   Y F
Sbjct: 981  HGVDALISFKTMENVRKGKGLEKGNSNNEKYIREAN--------VPEWFIQSCKKISYLF 1032

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV--------------EKIKKFCQ 807
             +SHA AY +++++ AW K +YP+ F A+  T+  +                ++I +   
Sbjct: 1033 PRSHAVAYVMMAFRIAWFKVYYPLAFYASYFTIRAEGSFNSLVILKGLEAQRKEILRISS 1092

Query: 808  DARQFNI-------------------QIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVGT 847
              R  N+                   + +P S+  +   +FK+ D ++      I  +G 
Sbjct: 1093 LERPTNVDKENATVIEVAAEMYLRGYEFLPISLTESDAYEFKIVDGKLLPPFNCIPALGN 1152

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
              A+ I++A  + PF S ED   R    K+++ V+E++
Sbjct: 1153 QVAKEIVQAREEAPFTSKEDLKKR---GKVSQSVIETM 1187


>gi|282932865|ref|ZP_06338262.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 208-1]
 gi|281302900|gb|EFA95105.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 208-1]
          Length = 1439

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 164/784 (20%), Positives = 300/784 (38%), Gaps = 165/784 (21%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
             + +L     +P+VAT +  +L+ ED    ++L+A   S     K +P++   H+   + 
Sbjct: 720  NIYKLGQELNIPVVATGDCHYLNPEDKIYREILIAAQRSNPNRNKSQPKL---HFYSTQ- 775

Query: 259  EMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFI---EKECDDIQKEEEN 309
            EM+  F+ + E       ++NT +IA     I  V + + P  I   +++  D+   +  
Sbjct: 776  EMLDAFNFMGEDVAKEIVIDNTNKIADEIEEIAPVKSGLYPPHIKDADQQMTDLTYNKAY 835

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL  K +  +                  + R++ ELN I    ++  +LI    +  + K
Sbjct: 836  ELYGKPLPKI-----------------VKDRIELELNSIISNGYAVIYLISQKLVAKSNK 878

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDI 420
            +   VG  RGS   S+ A    IT+++PL         ++S  FE         +PD   
Sbjct: 879  DGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPKCKYSHFFENGEYGSGFDLPD--- 934

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
              C +   E+++  Q+           TF        + D+       Y  V      + 
Sbjct: 935  KKCPECGTELVKDGQD-------IPFATFLGFHGD-KVPDIDLNFSGDYQPVAHNYIRVM 986

Query: 481  NDPAHPV---SLQAIADDSRF---------REARLADPSVDRLLEISQKLEGLYRHASTH 528
              PA+     ++  +AD + +         R   L    +DRL   +    G+ R    H
Sbjct: 987  FGPANSFRAGTISTVADKTAYGYAKHFEEERNLNLRSAELDRL---ATGTSGVKRTTGQH 1043

Query: 529  AAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
             AGIV+   D  +    P+     D+ +    T F+   I    ++KFD LG    T+++
Sbjct: 1044 PAGIVVVPDDMDIYDFTPVQYPADDLNAAWLTTHFDFHSIHD-NILKFDILGHDDPTMIR 1102

Query: 584  KSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMR 629
                 + Q    VD   IP DD     L               +  GTLG+ +  +  +R
Sbjct: 1103 -----MLQDLSGVDPMTIPPDDPGVMSLFSGTDILGVTPEQIASKTGTLGVPEFGTKFVR 1157

Query: 630  QALEGMQPDCIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
              LE   P    +++ +  L        G  +++V      NG  K+ ++    D ++ +
Sbjct: 1158 GMLEETNPTTFSELLQISGLSHGTDVWLGNAEDLV-----NNGTCKLKNVIGCRDNIMMD 1212

Query: 685  TQGVIIYQEQVMQIAQ-LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
                 +  E      + +  G  +S+ D+   A+ KK                  N I  
Sbjct: 1213 LIHWGVKPEVAFSTMESVRHGRGISDDDM---AVLKK-----------------NNNIPD 1252

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD------ 797
                +  ++   F      K+HA AY +++ + AW K +YPV +  +  ++  D      
Sbjct: 1253 WYIPSCLKIKYMFP-----KAHATAYILMALRIAWFKVYYPVIYYTSYFSVRADLFDLVA 1307

Query: 798  ----------NVEKIKKFCQDAR-----------------QFNIQIMPPSVN-TPCVDFK 829
                       ++KI+    DA                  +  I+I    VN +  ++FK
Sbjct: 1308 MSHGKNSVKAAIKKIQDQGNDASAKDKSLLTVLEIANECLERGIKIKMVDVNESEALNFK 1367

Query: 830  -VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             V D+ I     A+ G+G   A+ I+ A A++ F S ED  +R    K+++ +++ L   
Sbjct: 1368 IVDDHTILAPFNAVPGLGDNAAKQIVAARAEQKFLSKEDLRTR---GKVSQTIMDYLEVN 1424

Query: 889  GALD 892
            G L+
Sbjct: 1425 GVLE 1428


>gi|312985342|gb|ADR30814.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 109/241 (45%), Gaps = 29/241 (12%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +  +  N      + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLNYDTKNA-----YLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY     IKG+       I+E  ++   F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGVIYVGFGKIKGLNRKVIDEIVEERNSHGLFSGLTDFLQRMAGSDIGESDIVQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKF 943
            L +A +LD FGY+R +L                 +TN    I A E  G+   +  +   
Sbjct: 116  LTYASSLDHFGYNRQEL-----------------KTNAASLITAMEFGGSLLSETKISAI 158

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVV 1002
               +   R  +E+ VLGF  SGHP+D  +  + K   KGY + +  ++ + I ++A M+ 
Sbjct: 159  GEMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVK---KGYTQ-INDLKADQIVKMAVMID 214

Query: 1003 S 1003
            S
Sbjct: 215  S 215


>gi|294793759|ref|ZP_06758896.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            sp. 3_1_44]
 gi|294455329|gb|EFG23701.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            sp. 3_1_44]
          Length = 1219

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 190/994 (19%), Positives = 374/994 (37%), Gaps = 188/994 (18%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S V L +H+  S  +  +S+ ++   I     PA+AITD   + +  E        G++ 
Sbjct: 291  SRVELHLHTKMSDKDALVSVKDLFKTIKKWGHPAVAITDHGVVQAFPEAQALGKELGVKV 350

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPS-------IVLLVSTAEGYQRLIELVSRMYLL 122
            I G +  + ++D   + ++                 I+LL     G + L +++S  +L 
Sbjct: 351  IYGVEGYL-IEDETVIKDEEPVLDKKKKKEKDKRYHIILLAKNMVGLRNLYKMISISHL- 408

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +  K   R+  S ++E   EG+I+ +   +G + ++    +++   + LL     +    
Sbjct: 409  EHYKVRPRLPRSVIEE-HREGIIIGSACEAGELMQSIVRGATK---EELLEVASFYD--- 461

Query: 183  YVNLQRH--------RGYDRYRES------QVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
            Y+ +Q H        +G     ++       V++L      P+ AT +  +L+ E+    
Sbjct: 462  YLEIQPHTNNTFLVRKGLMPDEQALIDMNKTVIELGEALNKPVCATCDVHYLTPEEKIYR 521

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQ 286
            ++++         ++      PD +L+   EM++ F  L E  A E  V   R  +  ++
Sbjct: 522  EIMLTACGYPDADEQ------PDLHLRTTDEMLASFPYLSEEKAYEVVVTNTRAINDSIE 575

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               P+          D     + E  ++A   +  R A+ AI      +  ++RLD+EL+
Sbjct: 576  DIKPV---------PDGTYSPKIEGADEAFTEMCYRNAK-AIYGDPLPRVVQERLDYELD 625

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL-------- 398
             I    +   + I    ++ +  +   VG  RGS   S  A    IT+++PL        
Sbjct: 626  CIISNGYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPHYVCPN 684

Query: 399  -RFSLLFER--------------------------------FLNPDRMSMPDFDIDFCQD 425
             ++S  FE+                                FL  +   +PD D++F  D
Sbjct: 685  CKYSEFFEKGEYAGGFDLPRKDCPECGHALQTNGHDIPFAIFLGFEGDKVPDIDLNFSGD 744

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             + +  +Y +  +G + V +  T G++  K A   V +     Y+++             
Sbjct: 745  YQAKAHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKK-----YAEI------------- 786

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLV 543
                + I   + F E             +++    +      H  GI++  R +      
Sbjct: 787  ----RDIQARNGFFE------------HLAKGFTNVKNTTGQHPGGIMVCPRDMDVHHFT 830

Query: 544  PMYRDV---RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+        S +  T F+   IE   + K D LG    T+++   D        +D   
Sbjct: 831  PIQHPANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIRMLEDLTG-----IDAKT 884

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII-ALVSLYRPGPIDNIV 659
            IPFDD +T  L ++   +G+   +  G + A   + P+C    +  ++   RP    ++V
Sbjct: 885  IPFDDPKTLSLFSSTEGIGLTPEQLQGDQVASLAV-PECGTKFVRGMLEDSRPQTFSDLV 943

Query: 660  VYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIA---QLLSGYSLSEADVLRR 715
              +   +G    + +   LI     +    I  ++ VM       +   +S    + +R+
Sbjct: 944  RISGFSHGTNVWLDNAQDLIKNGTCKLNEAISTRDDVMNFLIHRGMDRKHSFFVMENVRK 1003

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
              G + + +  +    F +   KN I +      F    K   Y F ++HA AY +++++
Sbjct: 1004 GKGIEKRNKQGQATTEFEAEMRKNNIPE-----WFIESCKKISYLFPRAHAVAYVMMAFR 1058

Query: 776  TAWMKTHYPVEFLAASMTL----------------EMDNVEKIKKFCQDA---------- 809
             AW K ++P+ F AA  ++                ++    +IK   + A          
Sbjct: 1059 IAWFKVYHPLAFYAAYFSIRAKAFDLRIMTGDLKTQLTEFNRIKALDRAASPKDKDLMSA 1118

Query: 810  ------------RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                        R  N+ I     ++    F + D  +     AI  +G T A  I+E  
Sbjct: 1119 LEVSMEMYQRGYRFINVDIQ----HSEARRFSIKDGALLPPFLAIDSLGETVADAIVEER 1174

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             ++PF SL+D   R         +++ L   G L
Sbjct: 1175 NERPFTSLKDLQRRCKVSNTIIDLMKDLKCCGEL 1208


>gi|323484216|ref|ZP_08089585.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
            WAL-14163]
 gi|323692098|ref|ZP_08106345.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
 gi|323402458|gb|EGA94787.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
            WAL-14163]
 gi|323503898|gb|EGB19713.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
          Length = 1511

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 171/795 (21%), Positives = 287/795 (36%), Gaps = 184/795 (23%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++V L   +  P+ AT +  FL  ED     ++M+         KD     P  YL+   
Sbjct: 786  RIVGLGEQYNKPVCATCDVHFLDPEDEVYRRIIMSSK-----GFKDADDQAP-LYLRTTD 839

Query: 259  EMVSIF----SDLPE--ALENTVEIARRCSFILQVH----APILPRFIEKECDDIQKEEE 308
            EM+  F    SD  E   + NT +IA  C  I  V     AP++P   E     I   + 
Sbjct: 840  EMLREFEYLGSDKAEEVVITNTRKIAAMCERIEPVRPDKCAPVIPNSDET-LRSICYNKA 898

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            +E+  + +  + V                  RL+ ELN I    F+  ++I    +  + 
Sbjct: 899  HEMYGENLPKIVV-----------------DRLERELNSIISNGFAVMYIIAQKLVWKSN 941

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------------- 399
            ++   VG  RGS   S+ A    IT+++PL                              
Sbjct: 942  EDGYLVG-SRGSVGSSLVATMSGITEVNPLSPHYYCTNCHYYDFDSEEVRKFAGMAGCDM 1000

Query: 400  ----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                            F + FE FL       PD D++F  + +     Y +  +G  + 
Sbjct: 1001 PDKNCPVCGEPLKKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSRAHTYTEVIFGKGQT 1060

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
             +  T G+L  K A           Y  V                 +   +D   R+ R 
Sbjct: 1061 FRAGTIGTLADKTA-----------YGYV-----------------KGYYEDRGVRKRRC 1092

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQF 558
                +DR++       G+ R    H  GI++      +    P+     D+ +    T F
Sbjct: 1093 ---EIDRIV---GGCVGVRRTTGQHPGGIIVLPHGEEIYSFTPVQHPADDMTTRTVTTHF 1146

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
            +   I+   L+K D LG    T+++   D   Q  VK      P D  E   L      L
Sbjct: 1147 DYHSIDH-NLLKLDILGHDDPTMIRMLQDLTGQDPVKD----FPLDSKEVMSLFQNTSAL 1201

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK-IVSIHPL 677
            GI   +  G +    G+     +  + ++   +P    ++V  +   +G +  + +   L
Sbjct: 1202 GIEPEDIGGCKLGALGIPEFGTDFAMQMLIDAQPKYFSDLVRISGLSHGTDVWLGNAQTL 1261

Query: 678  IDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            I       Q  I  ++ +M       L  G + +  + +R+  GK +K+E       +I 
Sbjct: 1262 IQEGKATIQTAICTRDDIMVYLIGMGLEEGLAFTIMESVRK--GKGLKDE-------WIK 1312

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA---- 790
              + +G+      + +    K   Y F K+HAAAY +++++ A+ K  YP+ + AA    
Sbjct: 1313 EMTDHGVP-----DWYIWSCKKIKYMFPKAHAAAYVMMAWRIAYCKVFYPLAYYAAFFSI 1367

Query: 791  -----SMTLEMDNVEKIKKFCQD--------------------------ARQFN---IQI 816
                 S  L     EK++    D                          AR F    I I
Sbjct: 1368 RASGFSYVLMCQGREKLEYHLADYKKRMDTLSKKEQDTLRDMRIVQEMYARGFEFTAIDI 1427

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
               S  +    F++ D ++  SL++I G+G   A  I+ A+ D PF S EDF +R    K
Sbjct: 1428 FKASARS----FQIVDGKLMPSLSSIDGLGEKAADAIVFAAEDGPFLSREDFINRTKVTK 1483

Query: 877  LNRRVLESLVFAGAL 891
                ++  L   G L
Sbjct: 1484 TVCDLMGELGLLGDL 1498


>gi|295706248|ref|YP_003599323.1| DNA polymerase III subunit alpha [Bacillus megaterium DSM 319]
 gi|294803907|gb|ADF40973.1| DNA polymerase III, alpha subunit [Bacillus megaterium DSM 319]
          Length = 1436

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 169/807 (20%), Positives = 298/807 (36%), Gaps = 206/807 (25%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
            S +V+L      P+VAT N  +L+ ED     +L  +      +  +R ++ PD + ++ 
Sbjct: 717  SNIVKLGEKIGKPVVATGNVHYLNPEDKIYRKIL--IGSQGGANPLNRHQL-PDVHFRST 773

Query: 258  SEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
             EM++ FS  D  +A E  V   ++ + ++               DDI K  +++L    
Sbjct: 774  DEMLNCFSFLDGDKAKEIVVHNTQKIADMI---------------DDI-KPIKDDLYTPK 817

Query: 316  VAGL--EVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            + G   E+R    A+A+  + +D  +    RL+ EL  I    F+  +LI    ++ +  
Sbjct: 818  IEGADEEMREMSYAMARSIYGEDLPEVVEARLEKELKSIIGHGFAVIYLISHKLVKKSLN 877

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPL------------------------------- 398
            +   VG  RGS   S  A    IT+++PL                               
Sbjct: 878  DGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPKCKKSEFFNDGSVGSGFDLPDKSC 936

Query: 399  ----------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
                         + FE FL      +PD D++F  + +     Y +  +G + V +  T
Sbjct: 937  DDCGVPFIKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDNVYRAGT 996

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
             G++  K A           Y  V                 +  A D   R+  L +  V
Sbjct: 997  IGTVAEKTA-----------YGYV-----------------KGYAGD---RDLHLRNAEV 1025

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV-------------RSDLPV 555
            DRL+       G+ R    H  GI++        VP Y D+              S+   
Sbjct: 1026 DRLV---AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQFPADDRNSEWRT 1074

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY------ 609
            T F+   I    L+K D LG    T+++   D        +D   IP DD E        
Sbjct: 1075 THFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGT 1128

Query: 610  --------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
                     ++   GTLGI +  +  +RQ LE  +P    +++ +  L       ++ + 
Sbjct: 1129 ESLGVTEEQIMCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHG---TDVWLG 1185

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N ++  +  I ++  +I     +    +IYQ     +A     + + E+    + +  + 
Sbjct: 1186 NAQELIRNDICNLSEVIG-CRDDIMVYLIYQGLEPSLA-----FKIMESVRKGKGLTPEF 1239

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEM            KNG+      + +    K   Y F K+HAAAY +++ + A+ K 
Sbjct: 1240 EEEM-----------IKNGVP-----DWYIDSCKKIKYMFPKAHAAAYVLMAVRIAYFKV 1283

Query: 782  HYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVNTPCV------ 826
            H+ + + AA  T+  D+ +          I+   ++     +   P   N   V      
Sbjct: 1284 HHALLYYAAYFTVRADDFDIDTMIKGSTAIRAKMEEINAKGLDASPKEKNLLTVLELSLE 1343

Query: 827  -------------------DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
                               +F +    +     AI G+GT  A +I++A     F S ED
Sbjct: 1344 MCERGYSFKKVDLYESSADEFLIDGTSLVPPFNAIPGLGTNAALNIVKARETGEFLSKED 1403

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCF 894
               R    K+++ +LE L   G L+  
Sbjct: 1404 LQQR---GKVSKTILEYLDNHGCLESL 1427


>gi|255018386|ref|ZP_05290512.1| hypothetical protein LmonF_13006 [Listeria monocytogenes FSL
           F2-515]
          Length = 161

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 90/169 (53%), Gaps = 14/169 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3   FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG  + + +Q  L   N  +        ++L+  +  GY +L+++ S +   ++G +   
Sbjct: 63  IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHQLLKIASAIQTREEGPE--- 109

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
           +  SWL+   ++ LI+++ G+ G I+R       + A +      ++FG
Sbjct: 110 LPQSWLRAYSSD-LIVISPGAKGEIERLLMEEDREGALEVYANLVEIFG 157


>gi|229098287|ref|ZP_04229234.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
 gi|228685185|gb|EEL39116.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
          Length = 1433

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 198/922 (21%), Positives = 343/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L +ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDQEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 782  EDKAKEIVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822  TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 881  SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPTCNVSY 940

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 941  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKILFGEDYVYRAGTIGTVAEK 1000

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1001 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1026

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1027 AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQYPADSIGAEWRTTHFDFHS 1078

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        +D   IP DD E   + +         
Sbjct: 1079 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTE 1132

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1133 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1193 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1235

Query: 725  MDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  K   + G   +   K               Y F K+HAAAY +++ + A+ K H+
Sbjct: 1236 WEEDMKSNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------ 822
             + F AA  T+  D  +VE + K     R       Q  +   P   +            
Sbjct: 1283 ALLFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATEFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    K+++ ++E L   G L
Sbjct: 1403 QR---SKVSKTIIEYLDSQGCL 1421


>gi|313472267|ref|ZP_07812759.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 1153]
 gi|239529663|gb|EEQ68664.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 1153]
          Length = 1428

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 163/781 (20%), Positives = 299/781 (38%), Gaps = 159/781 (20%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
             + +L     +P+VAT +  +L+ ED    ++L+A   S     K +P++   H+   + 
Sbjct: 709  NIYKLGQELNIPVVATGDCHYLNPEDKIYREILIAAQRSNPNRNKSQPKL---HFYSTQ- 764

Query: 259  EMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFI---EKECDDIQKEEEN 309
            EM+  F+ + E       ++NT +IA     I  V + + P  I   +++  D+   +  
Sbjct: 765  EMLDAFNFMGEDVAKEIVIDNTNKIADEIEEIAPVKSGLYPPHIKDADQQMTDLTYNKAY 824

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL  K +  +                  + R++ ELN I    ++  +LI    +  + K
Sbjct: 825  ELYGKPLPKI-----------------VKDRIELELNSIISNGYAVIYLISQKLVAKSNK 867

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDI 420
            +   VG  RGS   S+ A    IT+++PL         ++S  FE         +PD   
Sbjct: 868  DGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPKCKYSHFFENGEYGSGFDLPD--- 923

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
              C +   E+++  Q+           TF        + D+       Y  V      + 
Sbjct: 924  KKCPECGTELVKDGQD-------IPFATFLGFHGD-KVPDIDLNFSGDYQPVAHNYIRVM 975

Query: 481  NDPAHPV---SLQAIADDS------RFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
              PA+     ++  +AD +       F E R  +     L  ++    G+ R    H AG
Sbjct: 976  FGPANSFRAGTISTVADKTAYGYAKHFEEERNLNLRSAELDRLATGTSGVKRTTGQHPAG 1035

Query: 532  IVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            IV+   D  +    P+     D+ +    T F+   I    ++KFD LG    T+++   
Sbjct: 1036 IVVVPDDMDIYDFTPVQYPADDLNAAWLTTHFDFHSIHD-NILKFDILGHDDPTMIR--- 1091

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQAL 632
              + Q    VD   IP DD     L               +  GTLG+ +  +  +R  L
Sbjct: 1092 --MLQDLSGVDPMTIPPDDPGVMSLFSGTDILGVTPEQIASKTGTLGVPEFGTKFVRGML 1149

Query: 633  EGMQPDCIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            E   P    +++ +  L        G  +++V      NG  K+ ++    D ++ +   
Sbjct: 1150 EETNPTTFSELLQISGLSHGTDVWLGNAEDLV-----NNGTCKLKNVIGCRDNIMMDLIH 1204

Query: 688  VIIYQEQVMQIAQ-LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
              +  E      + +  G  +S+ D+   A+ KK                  N I     
Sbjct: 1205 WGVKPEVAFSTMESVRHGRGISDDDM---AVLKK-----------------NNNIPDWYI 1244

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD--------- 797
             +  ++   F      K+HA AY +++ + AW K +YPV +  +  ++  D         
Sbjct: 1245 PSCLKIKYMFP-----KAHATAYILMALRIAWFKVYYPVIYYTSYFSVRADLFDLVAMSH 1299

Query: 798  -------NVEKIKKFCQDAR-----------------QFNIQIMPPSVN-TPCVDFK-VG 831
                    ++KI+    DA                  +  I+I    VN +  ++FK V 
Sbjct: 1300 GKNSVKAAIKKIQDQGNDASAKDKSLLTVLEIANECLERGIKIKMVDVNESEALNFKIVD 1359

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            D+ I     A+ G+G   A+ I+ A A++ F S ED  +R    K+++ +++ L   G L
Sbjct: 1360 DHTILAPFNAVPGLGDNAAKQIVAARAEQKFLSKEDLRTR---GKVSQTIMDYLEVNGVL 1416

Query: 892  D 892
            +
Sbjct: 1417 E 1417


>gi|300856235|ref|YP_003781219.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528]
 gi|300436350|gb|ADK16117.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528]
          Length = 1449

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 189/883 (21%), Positives = 319/883 (36%), Gaps = 198/883 (22%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++L     G + L +LVS  +L D   +  RI  S  ++  +EGLI+ +  S G + +A 
Sbjct: 622  IILAKDYVGLKNLYKLVSYSHL-DYFYKKPRILKSLYKKY-SEGLILGSACSEGELYQAI 679

Query: 160  FFNSSQVAEKRL------LTFKKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPL 211
                S    + L      L  + L  +   V  ++  G +   E   ++V L       +
Sbjct: 680  LLGKSDEEIEELAKGYDYLEIQPLGNNDYLVRTEQVPGKEYLEEINKKIVALGEKLNKLV 739

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            VAT +  F+  ED     +L A         KD     P  YLK   EM+  FS L +  
Sbjct: 740  VATGDVHFMDPEDEIYRRILEAGQ-----GFKDADNQAP-LYLKTTEEMLEEFSYLGKEK 793

Query: 270  ----ALENTVEIARRCSFILQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVR 322
                 + NT +I+  C  I  +     P  I   E+   DI  ++ +EL    +  +   
Sbjct: 794  AYEVVVTNTNKISDMCEPISPISPEKCPPHIDGCEQTIKDIAYKKAHELYGDPLPEI--- 850

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                           + RLD EL  I +  FS  ++I    +  + ++   VG  RGS  
Sbjct: 851  --------------VQSRLDRELESIIKNGFSVMYIIAQKLVWKSNEDGYLVG-SRGSVG 895

Query: 383  GSVTAYALTITDIDPL---------RFS-------------------------------L 402
             S  A    IT+++ L         ++S                               +
Sbjct: 896  SSFVANMTGITEVNSLPPHYRCPKCKYSDFSDYGVKNGFDLPDKVCPVCGEKLAKDGIDI 955

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL  +    PD D++F  + + +  +Y +  +G     +  T G++  K A   V 
Sbjct: 956  PFETFLGFNGDKEPDIDLNFSGEYQAKAHKYTEVIFGKGTTFKAGTIGTIAEKTAFGYVK 1015

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            +             K IP + A                          +  IS    G+ 
Sbjct: 1016 KYFDE---------KNIPVNKAE-------------------------ITRISAGCTGIK 1041

Query: 523  RHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H  GI++    R + +  P+     D  SD+  T F+   I++  L+K D LG  
Sbjct: 1042 RTTGQHPGGIIVVPKGREIFEFCPVQHPADDPNSDIITTHFDYHSIDQ-NLLKLDILGHD 1100

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQL 623
              T+++     + Q    V+   IP DD ET  + ++               GT GI + 
Sbjct: 1101 DPTVIR-----MLQDITGVNPHEIPMDDKETMSIFSSTEALGVTPEQINSKVGTFGIPEF 1155

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +R  L    P    D+I +  L         V   N K+          LID  + 
Sbjct: 1156 GTKFVRGMLVDTMPKAFSDLICISGLSH----GTDVWLGNAKD----------LIDDGIV 1201

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
                 I  ++ +M I  +  G   + A    + M    K ++ KQ E++   A    + +
Sbjct: 1202 TLSEAICTRDDIM-IYLIKKGLPPNSA---FKIMELVRKGKVSKQPEKW---AEYEALMR 1254

Query: 744  TIAVNIFEL-LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK- 801
               V  + +   K   Y F K+HAAAY +++++ AW K H P  + AA  T+     +  
Sbjct: 1255 EHKVPEWYIDSCKKIKYMFPKAHAAAYVMMAFRIAWFKVHIPKAYYAAYFTIRAKAFDSE 1314

Query: 802  -----IKKFCQDARQFNI---QIMPPSVN-------------------------TPCVDF 828
                  +K  +  R+  I   Q  P   +                         +    F
Sbjct: 1315 FMIFGKEKVIEKMREIQIMGNQATPKDKDMYDDLEIVLEMYERGFKFLPIDLYKSHATKF 1374

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
             V ++ +   + +I G+G   A  I  A+ ++ F S+ED   R
Sbjct: 1375 IVEEDGLRPPINSISGMGNIAAESIFSAAREEQFSSIEDVKKR 1417


>gi|255523409|ref|ZP_05390378.1| PHP domain protein [Clostridium carboxidivorans P7]
 gi|255512867|gb|EET89138.1| PHP domain protein [Clostridium carboxidivorans P7]
          Length = 232

 Score = 80.9 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 118/220 (53%), Gaps = 8/220 (3%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           EK+  +V L  H+ YSLL+ +  +  ++ K       +IAITD   ++  ++F ++A   
Sbjct: 3   EKTYDWVSLHQHTGYSLLDSSAKIPELISKAKELGMKSIAITDHGVMYGCVDFYKEAKEQ 62

Query: 66  GIQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           GI+PIIGC++ +  +  ++K  ++    +     +VLLV    GY+ L+++VS+   ++ 
Sbjct: 63  GIKPIIGCEVYVAGKSMHIKQNDKENENY----HLVLLVKNETGYKNLMKIVSKAS-VEG 117

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                R    +L++  +EGLI L+    G I       +   A++  L +K +F D  Y+
Sbjct: 118 FYYKPRTDHDYLKK-HSEGLISLSACLGGEIQSYILKGNLSKAKEIALLYKDIFKDGFYL 176

Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEE 223
            LQ H   ++ +   ++++++   ++PLVATN+  ++ ++
Sbjct: 177 ELQYHGMEEQEKVNEELIKMSKELDIPLVATNDVHYIKKK 216


>gi|261407941|ref|YP_003244182.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10]
 gi|261284404|gb|ACX66375.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10]
          Length = 1438

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 143/684 (20%), Positives = 254/684 (37%), Gaps = 163/684 (23%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
            S+VV++      P++AT N  +L   D    D+ +   H        +    PD + +  
Sbjct: 716  SKVVRIGEKLNKPVIATGNVHYLEPRDKLFRDITI---HGITGFSPLKDMRKPDAHFRTT 772

Query: 258  SEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             EM+  F  L +       + NT E+A R           L  F +K    I +  + E+
Sbjct: 773  EEMLQEFEFLGQDKCYEVVVTNTSELADRFE--------DLELFPDKLFTPILEGADEEI 824

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWA 367
            RN               AK  + ++  +    RL+ EL  I R  FS  +LI    ++ +
Sbjct: 825  RNTCYD----------TAKSIYGENLPEVVVARLEKELEPIIRYGFSANYLISEKLVKKS 874

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------------------ 403
             ++   VG  RGS   SV A  L I++++PL    +                        
Sbjct: 875  NRDGYLVG-SRGSVGSSVVATFLGISEVNPLPAHYICLNSDCKHSEWFLDGSVPSGFDLP 933

Query: 404  -------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                               FE FL      +PD D++F  + +     + +  +G + V 
Sbjct: 934  DKACPECGNMMKGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHNFTKEMFGEKNVF 993

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++  K A           Y +                      ++ R+R A L 
Sbjct: 994  RAGTIGTVAEKTAF-----GFAKKYEE---------------------HNNKRWRGAEL- 1026

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFN 559
                +RL   +    G+ R    H  GIV+      + ++ P+     DV ++   T F+
Sbjct: 1027 ----NRL---ASGCTGVKRSTGQHPGGIVVVPDYIEVEEITPVQYPADDVNAEWKTTHFD 1079

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK---- 615
                E A L+K D LG    T+++   D        VD + IP +D +   +  +     
Sbjct: 1080 YHAFE-ANLLKLDILGHDDPTMMRMLQDLTG-----VDPTTIPMNDPKVMSMFNSTEALG 1133

Query: 616  ----------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                       T G+ ++ +  +RQ L   QP    D++ +  L     +         K
Sbjct: 1134 VKPEQIRSPVATFGVPEMGTKFVRQMLVESQPSSFADLLQISGLSHGTGVWLGNAQELIK 1193

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG   I ++    D ++      +IY+  +   A L   + ++E+    R + ++  +EM
Sbjct: 1194 NGTCNIKTVIGCRDDIML----FLIYKAGM--DASL--AFKITESVRKGRGLSQEWIDEM 1245

Query: 726  DKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             K K  + +I    K                    Y F K+HAAAY + + +TA+ K +Y
Sbjct: 1246 KKCKVPQWYIDSCLK------------------IQYMFPKAHAAAYVISAVRTAYFKLYY 1287

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQ 807
            P+E+ A   ++  ++ + I+  CQ
Sbjct: 1288 PIEYYATYFSVRAEDFD-IELCCQ 1310


>gi|238854744|ref|ZP_04645074.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 269-3]
 gi|238832534|gb|EEQ24841.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 269-3]
          Length = 1405

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 163/781 (20%), Positives = 299/781 (38%), Gaps = 159/781 (20%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
             + +L     +P+VAT +  +L+ ED    ++L+A   S     K +P++   H+   + 
Sbjct: 686  NIYKLGQELNIPVVATGDCHYLNPEDKIYREILIAAQRSNPNRNKSQPKL---HFYSTQ- 741

Query: 259  EMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFI---EKECDDIQKEEEN 309
            EM+  F+ + E       ++NT +IA     I  V + + P  I   +++  D+   +  
Sbjct: 742  EMLDAFNFMGEDVAKEIVIDNTNKIADEIEEIAPVKSGLYPPHIKDADQQMTDLTYNKAY 801

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL  K +  +                  + R++ ELN I    ++  +LI    +  + K
Sbjct: 802  ELYGKPLPKI-----------------VKDRIELELNSIISNGYAVIYLISQKLVAKSNK 844

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDI 420
            +   VG  RGS   S+ A    IT+++PL         ++S  FE         +PD   
Sbjct: 845  DGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPKCKYSHFFENGEYGSGFDLPD--- 900

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
              C +   E+++  Q+           TF        + D+       Y  V      + 
Sbjct: 901  KKCPECGTELVKDGQD-------IPFATFLGFHGD-KVPDIDLNFSGDYQPVAHNYIRVM 952

Query: 481  NDPAHPV---SLQAIADDS------RFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
              PA+     ++  +AD +       F E R  +     L  ++    G+ R    H AG
Sbjct: 953  FGPANSFRAGTISTVADKTAYGYAKHFEEERNLNLRSAELDRLATGTSGVKRTTGQHPAG 1012

Query: 532  IVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            IV+   D  +    P+     D+ +    T F+   I    ++KFD LG    T+++   
Sbjct: 1013 IVVVPDDMDIYDFTPVQYPADDLNAAWLTTHFDFHSIHD-NILKFDILGHDDPTMIR--- 1068

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQAL 632
              + Q    VD   IP DD     L               +  GTLG+ +  +  +R  L
Sbjct: 1069 --MLQDLSGVDPMTIPPDDPGVMSLFSGTDILGVTPEQIASKTGTLGVPEFGTKFVRGML 1126

Query: 633  EGMQPDCIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            E   P    +++ +  L        G  +++V      NG  K+ ++    D ++ +   
Sbjct: 1127 EETNPTTFSELLQISGLSHGTDVWLGNAEDLV-----NNGTCKLKNVIGCRDNIMMDLIH 1181

Query: 688  VIIYQEQVMQIAQ-LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
              +  E      + +  G  +S+ D+   A+ KK                  N I     
Sbjct: 1182 WGVKPEVAFSTMESVRHGRGISDDDM---AVLKK-----------------NNNIPDWYI 1221

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD--------- 797
             +  ++   F      K+HA AY +++ + AW K +YPV +  +  ++  D         
Sbjct: 1222 PSCLKIKYMFP-----KAHATAYILMALRIAWFKVYYPVIYYTSYFSVRADLFDLVAMSH 1276

Query: 798  -------NVEKIKKFCQDAR-----------------QFNIQIMPPSVN-TPCVDFK-VG 831
                    ++KI+    DA                  +  I+I    VN +  ++FK V 
Sbjct: 1277 GKNSVKAAIKKIQDQGNDASAKDKSLLTVLEIANECLERGIKIKMVDVNESEALNFKIVD 1336

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            D+ I     A+ G+G   A+ I+ A A++ F S ED  +R    K+++ +++ L   G L
Sbjct: 1337 DHTILAPFNAVPGLGDNAAKQIVAARAEQKFLSKEDLRTR---GKVSQTIMDYLEVNGVL 1393

Query: 892  D 892
            +
Sbjct: 1394 E 1394


>gi|260663976|ref|ZP_05864829.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii SJ-7A-US]
 gi|260561862|gb|EEX27831.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii SJ-7A-US]
          Length = 1439

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 164/784 (20%), Positives = 300/784 (38%), Gaps = 165/784 (21%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
             + +L     +P+VAT +  +L+ ED    ++L+A   S     K +P++   H+   + 
Sbjct: 720  NIYKLGQELNIPVVATGDCHYLNPEDKIYREILIAAQRSNPNRNKPQPKL---HFYSTQ- 775

Query: 259  EMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFI---EKECDDIQKEEEN 309
            EM+  F+ + E       ++NT +IA     I  V + + P  I   +++  D+   +  
Sbjct: 776  EMLDAFNFMGEDVAKEIVIDNTNKIADEIEEIAPVKSGLYPPHIKDADQQMTDLTYNKAY 835

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL  K +  +                  + R++ ELN I    ++  +LI    +  + K
Sbjct: 836  ELYGKPLPKI-----------------VKDRIELELNSIISNGYAVIYLISQKLVAKSNK 878

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDI 420
            +   VG  RGS   S+ A    IT+++PL         ++S  FE         +PD   
Sbjct: 879  DGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPKCKYSHFFENGEYGSGFDLPD--- 934

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
              C +   E+++  Q+           TF        + D+       Y  V      + 
Sbjct: 935  KKCPECGTELVKDGQD-------IPFATFLGFHGD-KVPDIDLNFSGDYQPVAHNYIRVM 986

Query: 481  NDPAHPV---SLQAIADDSRF---------REARLADPSVDRLLEISQKLEGLYRHASTH 528
              PA+     ++  +AD + +         R   L    +DRL   +    G+ R    H
Sbjct: 987  FGPANSFRAGTISTVADKTAYGYAKHFEEERNLNLRSAELDRL---ATGTSGVKRTTGQH 1043

Query: 529  AAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
             AGIV+   D  +    P+     D+ +    T F+   I    ++KFD LG    T+++
Sbjct: 1044 PAGIVVVPDDMDIYDFTPVQYPADDLNAAWLTTHFDFHSIHD-NILKFDILGHDDPTMIR 1102

Query: 584  KSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMR 629
                 + Q    VD   IP DD     L               +  GTLG+ +  +  +R
Sbjct: 1103 -----MLQDLSGVDPMTIPPDDPGVMSLFSGTDILGVTPEQIASKTGTLGVPEFGTKFVR 1157

Query: 630  QALEGMQPDCIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
              LE   P    +++ +  L        G  +++V      NG  K+ ++    D ++ +
Sbjct: 1158 GMLEETNPTTFSELLQISGLSHGTDVWLGNAEDLV-----NNGTCKLKNVIGCRDNIMMD 1212

Query: 685  TQGVIIYQEQVMQIAQ-LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
                 +  E      + +  G  +S+ D+   A+ KK                  N I  
Sbjct: 1213 LIHWGVKPEVAFSTMESVRHGRGISDDDM---AVLKK-----------------NNNIPD 1252

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD------ 797
                +  ++   F      K+HA AY +++ + AW K +YPV +  +  ++  D      
Sbjct: 1253 WYIPSCLKIKYMFP-----KAHATAYILMALRIAWFKVYYPVIYYTSYFSVRADLFDLVA 1307

Query: 798  ----------NVEKIKKFCQDAR-----------------QFNIQIMPPSVN-TPCVDFK 829
                       ++KI+    DA                  +  I+I    VN +  ++FK
Sbjct: 1308 MSHGKNSVKAAIKKIQDQGNDASAKDKSLLTVLEIANECLERGIKIKMVDVNESEALNFK 1367

Query: 830  -VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             V D+ I     A+ G+G   A+ I+ A A++ F S ED  +R    K+++ +++ L   
Sbjct: 1368 IVDDHTILAPFNAVPGLGDNAAKQIVAARAEQKFLSKEDLRTR---GKVSQTIMDYLEVN 1424

Query: 889  GALD 892
            G L+
Sbjct: 1425 GVLE 1428


>gi|183508608|ref|ZP_02958116.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 14 str. ATCC 33697]
 gi|182676065|gb|EDT87970.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 14 str. ATCC 33697]
          Length = 1442

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 146/659 (22%), Positives = 240/659 (36%), Gaps = 174/659 (26%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             QR+  ELN I +  FS  + I    ++ + ++   VG  RGS   S+ A  L ITD++P
Sbjct: 843  EQRIKKELNSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGSSLVATFLNITDVNP 901

Query: 398  LRFSLL---------------------------------------FERFLNPDRMSMPDF 418
            L    L                                       FE FL  D   +PD 
Sbjct: 902  LTPHYLCPNCKKCEFITNADDGFDLAPKSCEQCQTPMLTDGHNIPFETFLGFDGDKVPDI 961

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F    +     ++++ +G     +  T G++   +A   V +  +            
Sbjct: 962  DLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAQTSAENTVKKYFE------------ 1009

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                             +RF E ++   S   L    QK     R    H  GI+I  + 
Sbjct: 1010 -----------------NRFSENKIIRDSTVSLY--VQKCIDSKRTTGQHPGGIIIVPKE 1050

Query: 539  LS--QLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF--LAQ 591
             S     P      D+      T F  +++  + L+KFD LG    T+L+   D+  + +
Sbjct: 1051 YSIWDFSPYNFPANDINETWKTTHFAFEYLHDS-LLKFDILGHDNPTILKLLKDYTGIDE 1109

Query: 592  RGVKV--DLSLIPFDDHETYH------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            R V +   L +  F D    +      L  T G + I +  +  +R  L   +P    D+
Sbjct: 1110 RDVPMYDPLVMKSFSDISALNIKPSDVLNETTGAISIPEFGTRFVRGMLVDTKPKSFADL 1169

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            I +  L     +             + ++    L+  ++     ++ Y   + Q  +  +
Sbjct: 1170 IRISGLSHGESV--------WLGNAQSLIKSGKLLKDVIACRDDIMTYL--IRQNVEPKT 1219

Query: 704  GYSLSEADVLRRAMGKKIKEEMD------KQKERFISGASKNGISKTIAVNIFELLAKFA 757
             + + E DV +   GKKIK E        K  E +I  A+K                   
Sbjct: 1220 AFLIME-DVRK---GKKIKPEHQIILKELKVPEWYIESANK------------------I 1257

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQD 808
             Y F K+HA AY + +++ AW K +YP+E+ AA  ++  DN          E I+K   D
Sbjct: 1258 KYMFPKAHATAYVMHAWKFAWYKIYYPLEYYAAFFSVRADNFDLFVINQGKEFIEKTYND 1317

Query: 809  --------------------------------ARQF---NIQIMPPSVNTPCVDFKVGDN 833
                                            AR F   NI I      +  +D +  +N
Sbjct: 1318 IEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKE--NN 1375

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I     AI+G+G T A  I+EA   K F ++ED  +R    K++R  L++L   G LD
Sbjct: 1376 AIIPPFIAIQGLGETVANSIIEARNQKVFSTIEDLKNRT---KISRTDLKNLRALGVLD 1431


>gi|229117304|ref|ZP_04246682.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
 gi|228666204|gb|EEL21668.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
          Length = 1435

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 197/922 (21%), Positives = 343/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 609  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 666

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 667  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 726

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L +ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 727  KPVVATGNVHYLDQEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 783

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT ++A   S I  VH P+                +++L    + G   E
Sbjct: 784  EDKAKEIVVTNTQKVA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 823

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 824  TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 882

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 883  SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPTCNVSY 942

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 943  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKILFGEDYVYRAGTIGTVAEK 1002

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1003 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1028

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1029 AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQYPADSIGAEWRTTHFDFHS 1080

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        +D   IP DD E   + +         
Sbjct: 1081 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTE 1134

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1135 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1194

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1195 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1237

Query: 725  MDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  K   + G   +   K               Y F K+HAAAY +++ + A+ K H+
Sbjct: 1238 WEEDMKSNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHF 1284

Query: 784  PVEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------ 822
             + F AA  T+  D  +VE + K     R       Q  +   P   +            
Sbjct: 1285 ALLFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1344

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED  
Sbjct: 1345 ERGYSFQKVDLYRSHATEFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQ 1404

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    K+++ ++E L   G L
Sbjct: 1405 QR---SKVSKTIIEYLDSQGCL 1423


>gi|304316867|ref|YP_003852012.1| DNA polymerase III subunit alpha [Thermoanaerobacterium
            thermosaccharolyticum DSM 571]
 gi|302778369|gb|ADL68928.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
            thermosaccharolyticum DSM 571]
          Length = 1410

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 189/896 (21%), Positives = 337/896 (37%), Gaps = 202/896 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +++LV   +G + L ELVS+  L +   ++ RI  S L ++  EGL++ +    G + R 
Sbjct: 590  VIILVKNQKGLRNLYELVSKSNL-EYFHRNPRIPKSLLTQM-REGLLIGSACEQGEVFRG 647

Query: 159  FF--FNSSQVAE----KRLLTFKKLFGDRLYVNLQRHRGYDRYRES------QVVQLAYT 206
                F+  ++ E       L  + L  +   ++    +G    +E       ++ +L   
Sbjct: 648  LISNFDDDKLQEIIRYYDYLEIQPLGNNEFLID----KGEVNSKEELIKINKRIYELGKR 703

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS- 265
             + P+VAT +  FL   D     +LM   +       DR    P  Y +   EM+S F+ 
Sbjct: 704  FKKPVVATCDVHFLDPWDDVYRKILM---YGKGFKDADR---QPPLYFRTTEEMLSEFNY 757

Query: 266  -DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
             D   A E  ++   +   +++   PI         +  ++E      NKA      +L 
Sbjct: 758  FDEKTAKEIVIDNPNKIVELIEDVKPIPDGTFPPSIEGAEEELRKLTLNKAHEIYGEKLP 817

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +             +RLD ELN I    ++  ++I    +  +  +   VG  RGS   S
Sbjct: 818  EIV----------EKRLDKELNSIINNGYAVMYIIAQKLVTKSLNDGYLVG-SRGSVGSS 866

Query: 385  VTAYALTITDIDPL------------RFSL-----------------------------L 403
              A    IT+++PL             F+L                              
Sbjct: 867  FVATMSGITEVNPLPPHYICPQCKYSEFALDGSYGSGVDMPDKNCPNCGTKMKKDGHDIP 926

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  +    PD D++F  D +    +Y +  +G   V +  T G+L  K A      
Sbjct: 927  FEVFLGFEGDKEPDIDLNFSGDYQPIAHKYTEEIFGTGHVFRAGTIGTLADKTA------ 980

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGL 521
                 Y  V +                       F E  L   +  + RL+       G 
Sbjct: 981  -----YGFVKKY----------------------FEEKNLLVHNAEIKRLV---MGCTGA 1010

Query: 522  YRHASTHAAGIVI--GDRPLSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGL 576
             R    H  G+++   DR + +  P+        SD+  T F+   I    L+K D LG 
Sbjct: 1011 KRTTGQHPGGVMVVPKDRDIYEFTPIQHPADAQDSDIITTHFDYHSIS-GRLLKLDILGH 1069

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKGTLGIFQ 622
               T+++   D        V+   IP DD ET  L T              T GTLG+ +
Sbjct: 1070 DDPTVIRMLEDLTG-----VNAREIPLDDKETMSLFTSVDALNIKPEDINCTVGTLGLPE 1124

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
              +  +RQ L   +P    +++ +  L         V  NN ++              ++
Sbjct: 1125 FGTRFVRQMLVDTKPTTFAELVRISGLSHGTD----VWLNNAQD--------------II 1166

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            KE +  +   ++V+     +  + +S+   + + +  KI E +  +K + I       + 
Sbjct: 1167 KEGKATL---KEVISTRDDIMLFLISKG--MDKKLSFKIMESV--RKGKGIKDEEIEEMK 1219

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE------- 795
            K    + F    K   Y F K+HA AY +++++ A+ K HYP  F A   T+        
Sbjct: 1220 KHDVPDWFIQSCKKIKYMFPKAHAVAYVIMAFRIAYFKVHYPEAFYATYFTVRADEFNLD 1279

Query: 796  -MDNVEKIKKFCQ--DARQFN--------IQIMPPSVNTPCVDFKVGDNRIYYS------ 838
             M+++EKIK+  +  +++  N        + I+   +       K  D  +Y S      
Sbjct: 1280 IMNSIEKIKENIRLIESKGNNATAKEKGLLTILEVGLEMYLRGLKFTDVDLYKSDAIKFL 1339

Query: 839  ---------LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                     L +++G+G   A+ I E   +  F S+ED  +R    ++++ V++ L
Sbjct: 1340 ITKDGILPPLNSLEGIGKQAAKIIAEERKNGKFLSIEDLRNRT---RISKTVIDIL 1392


>gi|126698903|ref|YP_001087800.1| DNA polymerase III PolC-type [Clostridium difficile 630]
 gi|255100324|ref|ZP_05329301.1| DNA polymerase III PolC-type [Clostridium difficile QCD-63q42]
 gi|255306262|ref|ZP_05350434.1| DNA polymerase III PolC-type [Clostridium difficile ATCC 43255]
 gi|115250340|emb|CAJ68162.1| DNA polymerase III PolC-type (PolIII) [Clostridium difficile]
          Length = 1432

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 188/920 (20%), Positives = 340/920 (36%), Gaps = 232/920 (25%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I L+   + G + L +++S  ++ +   ++ RI  S L E   EGLI+ +   +G + +A
Sbjct: 608  ITLIAKNSIGIKNLYKIISDAHV-NHFFRAPRILRSVLNEY-KEGLIIGSACEAGVVFQA 665

Query: 159  FFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
               N S    K+++             +R  ++    +  +  RE   +++  A   +  
Sbjct: 666  VKKNVSDEEMKKIIDLYDYIEVMPIDNNRFMIDKGEVKDEEELRELNRKLIDTAKKFDKI 725

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
             VAT +  FL + +     VL       V  ++     T  H+ +   EM+  FS L E 
Sbjct: 726  PVATGDVHFLDKHEAVLRKVLKYSQGFKVDEEE-----TYLHF-RTTDEMLEEFSYLGEE 779

Query: 271  L------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
            L      EN+  IA     I  +     P  IE    D++  E    + K + G  +   
Sbjct: 780  LAYEVVVENSNLIADMVEDIKPIPDDTYPPIIEGS--DVELREMCYKKAKRIYGDPI--- 834

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                      +  ++RLD ELN I    ++  ++I    +  +  +   VG  RGS   S
Sbjct: 835  ---------PEIVQKRLDRELNSIISNGYAVMYIIAQKLVAKSLSDGYLVG-SRGSVGSS 884

Query: 385  VTAYALTITDIDPL-----------RFSLL------------------------------ 403
              A    IT+++PL           ++S                                
Sbjct: 885  FAATMSDITEVNPLPAHYICENEDCKYSFFYEIGEWGSGVDLPDKDCPKCGRKLAKNGHD 944

Query: 404  --FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
              FE FL  +    PD D++F  + +  + +Y +  +G   V +  T G++  K A    
Sbjct: 945  IPFEVFLGFEGDKEPDIDLNFSGNYQPTIHKYTEELFGEGYVYRAGTIGTVAEKTAF--- 1001

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            G A +                                 E  ++ P+ + +L +S    G+
Sbjct: 1002 GYARKY------------------------------VEENNISVPNAE-VLRLSNGCTGV 1030

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGL 568
             R +  H  G+++        +P Y+DV    P+             T F+   I    +
Sbjct: 1031 KRTSGQHPGGVMV--------IPDYKDVYDFTPIQYPANDTSCGVITTHFDYHSI-SGRI 1081

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK------------- 615
            +K D LG    T+++   D        ++++ IP DD ET  L T+              
Sbjct: 1082 LKLDILGHDGPTIIRMLEDMTG-----INITEIPLDDKETMSLFTSTEALGVTPEEINCP 1136

Query: 616  -GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
             G L + +  +  +RQ L   +P    +++ +  L       ++ V N +   +E IV +
Sbjct: 1137 IGCLAVPEFGTKFVRQMLLDTKPTTFAELVRISGLSHGT---DVWVNNAQDLVREDIVGL 1193

Query: 675  HPLIDPMLKETQGVIIYQEQVMQ---IAQLLSGYSLSEADVLRRAMGKKIK--EEMDKQK 729
                       + VI  ++ +M       L    S +  + +R+  G K +  EEM K  
Sbjct: 1194 -----------KDVISTRDDIMNYLIFKGLPPKMSFTIMESVRKGKGLKPEHIEEMKKNN 1242

Query: 730  --ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
              E +I    K                    Y F K+HA AY + S++ A+ K HYP  F
Sbjct: 1243 VPEWYIGSCKK------------------IKYMFPKAHAVAYVMTSFRIAYCKVHYPEAF 1284

Query: 788  LAASMTLEMDN----------------VEKIKKFCQDARQ-----------------FNI 814
             A   T ++++                + +I+    DA                     I
Sbjct: 1285 YATYFTTKVEDFDADLIVKGLDAIKSKINEIESLGNDATTKEKGMLTVLEVALEMYARGI 1344

Query: 815  QIMPPSV-NTPCVDF-KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            +++P  +  +   +F  VG+  +   +AAI+G+G   A +I     +  F S ED   R 
Sbjct: 1345 KLLPVDIYKSDATEFIVVGEKTLLPPMAAIQGLGGNAAINIQNERKNGEFISKEDLRKRT 1404

Query: 873  DSKKLNRRVLESLVFAGALD 892
               K+++ V+E+L   G+L+
Sbjct: 1405 ---KISKTVIETLTNHGSLE 1421


>gi|253573562|ref|ZP_04850905.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
            str. D14]
 gi|251847090|gb|EES75095.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
            str. D14]
          Length = 1438

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 183/876 (20%), Positives = 317/876 (36%), Gaps = 225/876 (25%)

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK-----RLLTFKKLFGDRLYVNLQRHRGYDRYR 196
            EGL++L+G   G         S + AE       +L  + L    +Y++L          
Sbjct: 653  EGLLILSGCEKGEFFETVLNKSVEEAEAVAEFYDVLEIQPL---TMYMHLVEKGLVGSTE 709

Query: 197  ESQ-----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            E Q     +V++    + P+VAT N  +L  +D    D+ +   H        +    PD
Sbjct: 710  ELQTAIRKIVEIGMKLDKPVVATGNVHYLDPKDKLFRDITI---HGITGFSPLKEVRKPD 766

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             + +   EM+  F+ L +  E   E+    +  L      +  F +K    I +  + E+
Sbjct: 767  AHFRTTEEMLEEFAFLGQ--EKAWEVVVTNTSALADRFEEIELFPDKLFTPIIEGADEEI 824

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWA 367
            R K              AK  + ++  +    RL+ EL  I +  FS  +LI    ++ +
Sbjct: 825  RQKCYD----------TAKSIYGEELPEVIVKRLEKELEPIIKYGFSANYLISERLVKKS 874

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPL-----------RFS--------------- 401
             ++   VG  RGS   SV A  L I++++PL           ++S               
Sbjct: 875  NQDGYLVG-SRGSVGSSVVALFLGISEVNPLPAHYICQNPECKYSEWFLDGSVPSGFDLP 933

Query: 402  -----------------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL      +PD D++F  + +     Y +  +G + V 
Sbjct: 934  DKSCPKCGGKLKGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPVAHNYTKVLFGEKNVF 993

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++  K A           Y +                       +  +R A L 
Sbjct: 994  RAGTIGTVAEKTAF-----GFAKKYEE---------------------EHNKHWRGAEL- 1026

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV--------- 555
                +RL   +    G+ R    H  GIV+        VP Y DV    PV         
Sbjct: 1027 ----NRL---AAGCTGVKRSTGQHPGGIVV--------VPDYIDVEDITPVQYPADDTES 1071

Query: 556  ----TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
                T F+    + A L+K D LG    T+++   D        VD + IP +D +   +
Sbjct: 1072 EWKTTHFDYHAFD-ANLLKLDILGHDDPTMMRMLQDLTG-----VDPTTIPMNDPKVMSM 1125

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                           T   T GI ++ +  +RQ L   QP    D++ +  L     +  
Sbjct: 1126 FNSTDALGVTPEQIRTPVATYGIPEMGTKFVRQMLVESQPSSFADLLQISGLSHGTGVWL 1185

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
                   KNG   I ++    D ++      +IY+      A + +G +    + +R+  
Sbjct: 1186 GNAQELIKNGTCNIKTVIGCRDDIML----YLIYK------AGMDAGLAFKITESVRKGK 1235

Query: 718  G--KKIKEEMDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            G   +  EEM K K  + +I    K                    Y F K+HAAAY + +
Sbjct: 1236 GLTPEWIEEMKKCKVPQWYIDSCLK------------------IQYMFPKAHAAAYVISA 1277

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ----------DARQFNIQIMPPSVN- 822
             +TA+ K +YP+E+ A   ++  ++ + I+ +CQ          +  Q   Q +P   N 
Sbjct: 1278 VRTAYFKLYYPIEYYATYFSVRGEDFD-IELYCQGYEAIYRKIEEIEQKGFQALPKEKNM 1336

Query: 823  ------------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                                    +    F V  + +    +A+ G+G   A++I  A  
Sbjct: 1337 LPILEMALEMTARGFHFKPIDLYRSDATKFIVDGDSLIPPFSALAGIGENAAKNIAAAKE 1396

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               F S+EDF  +    K ++ ++E L   G++ CF
Sbjct: 1397 QGEFLSIEDFQQK---SKASKTIMELL---GSMGCF 1426


>gi|269798019|ref|YP_003311919.1| DNA polymerase III subunit alpha [Veillonella parvula DSM 2008]
 gi|269094648|gb|ACZ24639.1| DNA polymerase III, alpha subunit [Veillonella parvula DSM 2008]
          Length = 1263

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 188/997 (18%), Positives = 371/997 (37%), Gaps = 194/997 (19%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S V L +H+  S  +  +S+ ++   +     PA+AITD   + +  E        G++ 
Sbjct: 335  SRVELHLHTKMSDKDALVSVKDLFKTVKKWGHPAVAITDHGVVQAFPEAQALGKELGVKV 394

Query: 70   IIGCQ------LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            I G +        +   + L +  + K        I+LL     G + L +++S  +L +
Sbjct: 395  IYGVEGYLIEDETVTKDEELVLDKKKKKEKDKRYHIILLAKNMVGLRNLYKMISISHL-E 453

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
              K   R+  S ++E   EG+I+ +   +G + ++    +++   + LL     +    Y
Sbjct: 454  HYKVRPRLPRSVIEE-HREGIIIGSACEAGELMQSIVRGATK---EELLEIASFYD---Y 506

Query: 184  VNLQRH--------RGYDRYRES------QVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            + +Q H        +G     ++       V++L      P+ AT +  +L+ E+    +
Sbjct: 507  LEIQPHTNNMFLVRKGLMPDEQALIDMNKTVIELGEALNKPVCATCDVHYLTPEEKIYRE 566

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
            +++         ++      PD +L+   EM++ F  L E     V +            
Sbjct: 567  IMLTACGYPDADEQ------PDLHLRTTDEMLASFPYLSEEKRYEVVVTNT--------- 611

Query: 290  PILPRFIEKECDDIQKEEEN------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                R I    +DI+   +       E  ++A   +  R A+ AI      +  ++RLD+
Sbjct: 612  ----RAINDSIEDIKPVPDGTYSPKIEGADEAFTEMCYRNAK-AIYGDPLPRVVQERLDY 666

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----- 398
            EL+ I    +   + I    ++ +  +   VG  RGS   S  A    IT+++PL     
Sbjct: 667  ELDCIISNGYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPHYV 725

Query: 399  ----RFSLLFER--------------------------------FLNPDRMSMPDFDIDF 422
                ++S  FE+                                FL  +   +PD D++F
Sbjct: 726  CPNCKYSEFFEKGEYAGGFDLPRKDCPKCGHALQTNGHDIPFAIFLGFEGDKVPDIDLNF 785

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D + +  +Y +  +G + V +  T G++  K A   V +     Y+++          
Sbjct: 786  SGDYQAKAHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKK-----YAEI---------- 830

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS-- 540
                   + I   + F E             +++    +      H  GI++  R +   
Sbjct: 831  -------RDIQARNGFFE------------HLAKGFTNVKNTTGQHPGGIMVCPRDMDVH 871

Query: 541  QLVPMYRDV---RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+        S +  T F+   IE   + K D LG    T+++   D        +D
Sbjct: 872  HFTPIQHPANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIRMLEDLTG-----ID 925

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII-ALVSLYRPGPID 656
               IPFDD +T  L ++   +G+   +  G + A   + P+C    +  ++   RP    
Sbjct: 926  AKTIPFDDPKTLSLFSSTEGIGLTPEQLQGDQVASLAV-PECGTKFVRGMLEDSRPQTFS 984

Query: 657  NIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADV 712
            ++V  +   +G    + +   LI     +    I  ++ VM       +   +S    + 
Sbjct: 985  DLVRISGFSHGTNVWLDNAQDLIKNGTCKLNEAISTRDDVMNFLIHRGMDRKHSFFVMEN 1044

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +R+  G + + +  +    F +   +N I +      F    K   Y F ++HA AY ++
Sbjct: 1045 VRKGKGIEKRNKQGQATTEFEAEMRENNIPE-----WFIESCKKISYLFPRAHAVAYVMM 1099

Query: 773  SYQTAWMKTHYPVEFLAASMTL----------------EMDNVEKIKKFCQDA------- 809
            +++ AW K ++P+ F AA  ++                ++    +IK   + A       
Sbjct: 1100 AFRIAWFKVYHPLAFYAAYFSIRAKAFDLRIMTGDLKTQLTEFNRIKALDRAASPKDKDL 1159

Query: 810  ---------------RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
                           R  N+ I     ++    F + D  +     AI  +G T A  I+
Sbjct: 1160 MSALEVSMEMYQRGYRFINVDIQ----HSEARRFSIKDGALLPPFLAIDSLGETVADAIV 1215

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            E   ++PF SL+D   R         +++ L   G L
Sbjct: 1216 EERNERPFTSLKDLQRRCKVSNTIIDLMKDLKCCGEL 1252


>gi|254974851|ref|ZP_05271323.1| DNA polymerase III PolC-type [Clostridium difficile QCD-66c26]
 gi|255313978|ref|ZP_05355561.1| DNA polymerase III PolC-type [Clostridium difficile QCD-76w55]
 gi|255516658|ref|ZP_05384334.1| DNA polymerase III PolC-type [Clostridium difficile QCD-97b34]
 gi|255649757|ref|ZP_05396659.1| DNA polymerase III PolC-type [Clostridium difficile QCD-37x79]
 gi|260682913|ref|YP_003214198.1| DNA polymerase III PolC-type [Clostridium difficile CD196]
 gi|260686511|ref|YP_003217644.1| DNA polymerase III PolC-type [Clostridium difficile R20291]
 gi|260209076|emb|CBA62219.1| DNA polymerase III PolC-type [Clostridium difficile CD196]
 gi|260212527|emb|CBE03476.1| DNA polymerase III PolC-type [Clostridium difficile R20291]
          Length = 1432

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 188/920 (20%), Positives = 340/920 (36%), Gaps = 232/920 (25%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I L+   + G + L +++S  ++ +   ++ RI  S L E   EGLI+ +   +G + +A
Sbjct: 608  ITLIAKNSIGIKNLYKIISDAHV-NHFFRAPRILRSVLNEY-KEGLIIGSACEAGVVFQA 665

Query: 159  FFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
               N S    K+++             +R  ++    +  +  RE   +++  A   +  
Sbjct: 666  VKKNVSDEEMKKIIDLYDYIEVMPIDNNRFMIDKGEVKDEEELRELNRKLIDTAKKFDKI 725

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
             VAT +  FL + +     VL       V  ++     T  H+ +   EM+  FS L E 
Sbjct: 726  PVATGDVHFLDKHEAVLRKVLKYSQGFKVDEEE-----TYLHF-RTTDEMLEEFSYLGEE 779

Query: 271  L------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
            L      EN+  IA     I  +     P  IE    D++  E    + K + G  +   
Sbjct: 780  LAYEVVVENSNLIADMVEDIKPIPDDTYPPIIEGS--DVELREMCYKKAKRIYGDPI--- 834

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                      +  ++RLD ELN I    ++  ++I    +  +  +   VG  RGS   S
Sbjct: 835  ---------PEIVQKRLDRELNSIISNGYAVMYIIAQKLVAKSLSDGYLVG-SRGSVGSS 884

Query: 385  VTAYALTITDIDPL-----------RFSLL------------------------------ 403
              A    IT+++PL           ++S                                
Sbjct: 885  FAATMSDITEVNPLPAHYICENEDCKYSFFYEIGEWGSGVDLPDKDCPKCGRKLAKNGHD 944

Query: 404  --FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
              FE FL  +    PD D++F  + +  + +Y +  +G   V +  T G++  K A    
Sbjct: 945  IPFEVFLGFEGDKEPDIDLNFSGNYQPTIHKYTEELFGEGYVYRAGTIGTVAEKTAF--- 1001

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            G A +                                 E  ++ P+ + +L +S    G+
Sbjct: 1002 GYARKY------------------------------VEENNISVPNAE-VLRLSNGCTGV 1030

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGL 568
             R +  H  G+++        +P Y+DV    P+             T F+   I    +
Sbjct: 1031 KRTSGQHPGGVMV--------IPDYKDVYDFTPIQYPANDTSCGVITTHFDYHSI-SGRI 1081

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK------------- 615
            +K D LG    T+++   D        ++++ IP DD ET  L T+              
Sbjct: 1082 LKLDILGHDGPTIIRMLEDMTG-----INITEIPLDDKETMSLFTSTEALGVTPEEINCP 1136

Query: 616  -GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
             G L + +  +  +RQ L   +P    +++ +  L       ++ V N +   +E IV +
Sbjct: 1137 IGCLAVPEFGTKFVRQMLLDTKPTTFAELVRISGLSHGT---DVWVNNAQDLVREDIVGL 1193

Query: 675  HPLIDPMLKETQGVIIYQEQVMQ---IAQLLSGYSLSEADVLRRAMGKKIK--EEMDKQK 729
                       + VI  ++ +M       L    S +  + +R+  G K +  EEM K  
Sbjct: 1194 -----------KDVISTRDDIMNYLIFKGLPPKMSFTIMESVRKGKGLKPEHIEEMKKNN 1242

Query: 730  --ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
              E +I    K                    Y F K+HA AY + S++ A+ K HYP  F
Sbjct: 1243 VPEWYIGSCKK------------------IKYMFPKAHAVAYVMTSFRIAYCKVHYPEAF 1284

Query: 788  LAASMTLEMDN----------------VEKIKKFCQDARQ-----------------FNI 814
             A   T ++++                + +I+    DA                     I
Sbjct: 1285 YATYFTTKVEDFDADLIVKGLDAIKSKINEIESLGNDATTKEKGMLTVLEVALEMYARGI 1344

Query: 815  QIMPPSV-NTPCVDF-KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            +++P  +  +   +F  VG+  +   +AAI+G+G   A +I     +  F S ED   R 
Sbjct: 1345 KLLPVDIYKSDATEFIVVGEKTLLPPMAAIQGLGGNAAINIQNERKNGEFISKEDLRKRT 1404

Query: 873  DSKKLNRRVLESLVFAGALD 892
               K+++ V+E+L   G+L+
Sbjct: 1405 ---KISKTVIETLTNHGSLE 1421


>gi|225550655|ref|ZP_03771604.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 2 str. ATCC 27814]
 gi|225379809|gb|EEH02171.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 2 str. ATCC 27814]
          Length = 1442

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 148/659 (22%), Positives = 242/659 (36%), Gaps = 174/659 (26%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             QR+  ELN I +  FS  + I    ++ + K+   VG  RGS   S+ A  L ITD++P
Sbjct: 843  EQRIKKELNSIIKHGFSVVYWISHLLVEKSMKDGYGVG-SRGSVGSSLVATFLNITDVNP 901

Query: 398  LR--------------------FSLL-------------------FERFLNPDRMSMPDF 418
            L                     F L+                   FE FL  D   +PD 
Sbjct: 902  LAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPFETFLGFDGDKVPDI 961

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F    +     ++++ +G     +  T G++  K+A   V +  +            
Sbjct: 962  DLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKYFE------------ 1009

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                             +RF E ++   S   L    QK     R    H  GI+I  + 
Sbjct: 1010 -----------------NRFSENQIVRDSTVSLY--VQKCIDSKRTTGQHPGGIIIVPKE 1050

Query: 539  LS--QLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF--LAQ 591
             S     P      D+      T F  +++  + L+KFD LG    T+L+   D+  +  
Sbjct: 1051 YSIWDFSPYNFPANDINETWKTTHFAFEYLHDS-LLKFDILGHDNPTILKLLKDYTGIDD 1109

Query: 592  RGVKV--DLSLIPFDDHETYH------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            R V +   L +  F D    +      L  T G + I +  +  +R  L   +P    D+
Sbjct: 1110 RDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFGTRFVRGMLVDTKPKSFADL 1169

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            I +  L     +             + ++    L+  ++     ++ Y   + Q  +  +
Sbjct: 1170 IRISGLSHGESV--------WLGNAQSLIKSGKLLKDVIACRDDIMTYL--IRQNVEPKT 1219

Query: 704  GYSLSEADVLRRAMGKKIKEEMD------KQKERFISGASKNGISKTIAVNIFELLAKFA 757
             + + E DV +   GKKIK E        K  E +I  A+K                   
Sbjct: 1220 AFLIME-DVRK---GKKIKPEHQSILKELKIPEWYIESANK------------------I 1257

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQD 808
             Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN          E I+K   D
Sbjct: 1258 KYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDLFVINQGKEFIEKTYND 1317

Query: 809  --------------------------------ARQF---NIQIMPPSVNTPCVDFKVGDN 833
                                            AR F   NI I      +  +D +  +N
Sbjct: 1318 IEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQ--NN 1375

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I     AI+G+G T A  I+EA   K F ++ED  +R    K++R  L++L   G LD
Sbjct: 1376 AIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISRTDLKNLRELGVLD 1431


>gi|12044881|ref|NP_072691.1| DNA polymerase III PolC [Mycoplasma genitalium G37]
 gi|1352298|sp|P47277|DPO3_MYCGE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|3844641|gb|AAC71247.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            genitalium G37]
 gi|166078825|gb|ABY79443.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic
            Mycoplasma genitalium JCVI-1.0]
          Length = 1451

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 149/743 (20%), Positives = 271/743 (36%), Gaps = 170/743 (22%)

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEK 298
            + K++ +  P+ +L    EM+   S L E  A +  VE   +   +L ++  +  +   K
Sbjct: 765  NNKEKEQTVPEVFLHTTDEMLKRMSFLGEDIAYKLVVENTNKIVKLLDLNELVPTK--NK 822

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                + ++   +L +K     E R  +         +  ++R++ ELN I    F   F 
Sbjct: 823  LYPPVMQDSNQKLIDKTWKQAEKRYGKNL------PKLIKERIEKELNAIISNGFGIVFW 876

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL--------------- 403
            I    ++ + K+   VGP RGS   S+ A  + I++I+PL    L               
Sbjct: 877  ISHLLVEQSVKDGYFVGP-RGSIGSSLIANLIGISEINPLAAHYLCEQCHYFEVSDSVDD 935

Query: 404  --------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                      F  F+      +PD D++F  + + +   YV+  
Sbjct: 936  GYDLMIRDCPKCHEKASFKGDGHNIPFATFMGFSGDKIPDIDLNFSSEYQAKAHDYVRKL 995

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G     +  T  ++  K A           Y       ++I       V L   A+  R
Sbjct: 996  FGVNNTFRAGTIATVAEKTA-----------YGYARNYFEIIKR-----VDLATTAEIER 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPM---YRDVRSD 552
            F+                QKL G+ R    H  GI+I   D  + +  P      DV S+
Sbjct: 1040 FK----------------QKLIGIKRTTGQHPGGIMIFPSDHSVYEFTPCGFPADDVESE 1083

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T F    +  A ++K D LG    T+L+   D       K++   IP  D     + 
Sbjct: 1084 WKTTHFEYDALGDA-ILKLDILGQDDPTMLKHLADL-----TKINPQNIPHFDKNLISMF 1137

Query: 613  TTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            ++               G +GI +  +  +R+ LE  +P    D+I +  L       N+
Sbjct: 1138 SSNKPLNLKPGIVDEVTGAVGIPEFGTKFVRKILEQTKPKDFADLIRVSGLSHG---KNV 1194

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
               N +K           LI       + VI  ++ +M +  +  G    +A  +   + 
Sbjct: 1195 WADNAQK-----------LIKSNRLTLRDVIACRDDIM-LYLINKGMQAKDAFEIMEKVR 1242

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K IK    +       G  +  I+  + +N          Y F K+HAAAY +++++ AW
Sbjct: 1243 KGIKVNAKEVSLMQNCGVEQYWINACLKIN----------YLFPKAHAAAYVLMAWRIAW 1292

Query: 779  MKTHYPVEFLAASMTL----------------------EMDNVEKIKKF------CQDAR 810
             K ++P+ + A  ++                       E++ + +IKK          + 
Sbjct: 1293 FKLYHPLSYYACLLSFKLKEHDINGFEKGYEFIKNRLDELNKLYRIKKIKPKEAELLTSY 1352

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYS--------LAAIKGVGTTTARHIMEASADKPF 862
            +  +++M  ++    +  +  + R++             I G+G   A  I+EA  +KPF
Sbjct: 1353 EVYLEMMARNIKLQQISIQNSNARMFVEHNGVLIAPFITIPGMGEAVASSIVEARNEKPF 1412

Query: 863  DSLEDFCSRVDSKKLNRRVLESL 885
             SL DF  R    K +   +E L
Sbjct: 1413 ASLNDFKKRTKITKKHVETMEQL 1435


>gi|229104380|ref|ZP_04235049.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
 gi|228679078|gb|EEL33286.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
          Length = 1433

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 197/922 (21%), Positives = 343/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L +ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDQEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT ++A   S I  VH P+                +++L    + G   E
Sbjct: 782  EDKAKEIVVTNTQKVA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822  TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 881  SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPTCNVSY 940

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 941  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKILFGEDYVYRAGTIGTVAEK 1000

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1001 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1026

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1027 AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQYPADSIGAEWRTTHFDFHS 1078

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        +D   IP DD E   + +         
Sbjct: 1079 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTE 1132

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1133 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1193 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1235

Query: 725  MDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  K   + G   +   K               Y F K+HAAAY +++ + A+ K H+
Sbjct: 1236 WEEDMKSNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------ 822
             + F AA  T+  D  +VE + K     R       Q  +   P   +            
Sbjct: 1283 ALLFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATEFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    K+++ ++E L   G L
Sbjct: 1403 QR---SKVSKTIIEYLDSQGCL 1421


>gi|30021907|ref|NP_833538.1| DNA polymerase III PolC [Bacillus cereus ATCC 14579]
 gi|229146389|ref|ZP_04274760.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
 gi|81433857|sp|Q819Y5|DPO3_BACCR RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|29897463|gb|AAP10739.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
 gi|228637022|gb|EEK93481.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
          Length = 1435

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 198/922 (21%), Positives = 342/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 609  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 666

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 667  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 726

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 727  KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 783

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 784  EDKAKEVVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 823

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 824  TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 882

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 883  SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPACNIPY 942

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 943  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEK 1002

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1003 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1028

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1029 AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQYPADSIGAEWRTTHFDFHS 1080

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        +D   IP DD E   + +         
Sbjct: 1081 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTE 1134

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1135 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1194

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1195 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1237

Query: 725  MDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  K   + G   +   K               Y F K+HAAAY +++ + A+ K H+
Sbjct: 1238 WEEDMKNNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHF 1284

Query: 784  PVEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------ 822
             + F AA  T+  D  +VE + K     R       Q  +   P   +            
Sbjct: 1285 ALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1344

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED  
Sbjct: 1345 ERGYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQ 1404

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    K+++ ++E L   G L
Sbjct: 1405 QR---SKVSKTIIEYLDSQGCL 1423


>gi|238019269|ref|ZP_04599695.1| hypothetical protein VEIDISOL_01133 [Veillonella dispar ATCC 17748]
 gi|237863968|gb|EEP65258.1| hypothetical protein VEIDISOL_01133 [Veillonella dispar ATCC 17748]
          Length = 1263

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 176/899 (19%), Positives = 349/899 (38%), Gaps = 161/899 (17%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S V L +H+  S  +  +S+ ++   +     PA+AITD   + +  E        G++ 
Sbjct: 335  SRVELHLHTKMSDKDALVSVKDLFKTVKKWGHPAVAITDHGVVQAFPEAQALGKELGVKV 394

Query: 70   IIGCQ---LDIDM---QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            I G +   +D ++    + L +  + K        I+LL     G + L +++S  +L +
Sbjct: 395  IYGVEGYLIDDEIVARDEELVVDKKKKKEKDKRYHIILLAKNMVGLRNLYKMISISHL-E 453

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
              K   R+  S ++E   EG+I+ +   +G + ++    +++   + LL     +    Y
Sbjct: 454  HYKVRPRLPRSVIEE-HREGIIIGSACEAGELMQSIVRGATK---EELLEIASFYD---Y 506

Query: 184  VNLQRH--------RGYDRYRES------QVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            + +Q H        +G     ++       V++L      P+ AT +  +L+ E+    +
Sbjct: 507  LEIQPHTNNMFLVRKGLMPDEQALIDMNKTVIELGEALNKPVCATCDVHYLTPEEKIYRE 566

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQV 287
            +++         ++      PD +L+   EM++ F  L E  A E  V   R  +  ++ 
Sbjct: 567  IMLTACGYPDADEQ------PDLHLRTTDEMLASFPYLSEEKAYEVVVTNTRAINDSIED 620

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              P+          D     + E  ++A   +  R A+ AI      +  ++RLD+EL+ 
Sbjct: 621  IKPV---------PDGTYSPKIEGADEAFTEMCYRNAK-AIYGDPLPRVVQERLDYELDC 670

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--------- 398
            I    +   + I    ++ +  +   VG  RGS   S  A    IT+++PL         
Sbjct: 671  IISNGYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPHYVCPNC 729

Query: 399  RFSLLFER--------------------------------FLNPDRMSMPDFDIDFCQDR 426
            + S  FE+                                FL  +   +PD D++F  D 
Sbjct: 730  KHSEFFEKGEYAGGFDLPRKDCPECGHALQTNGHDIPFAIFLGFEGDKVPDIDLNFSGDY 789

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            + +  +Y +  +G + V +  T G++  K A   V +     Y+++              
Sbjct: 790  QAKAHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKK-----YAEI-------------- 830

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVP 544
               + I   S F E             +++    +      H  GI++  R +      P
Sbjct: 831  ---RDIQARSGFFE------------HLAKGFTNVKNTTGQHPGGIMVCPRDMDVHHFTP 875

Query: 545  MYRDV---RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            +        S +  T F+   IE   + K D LG    T+++   D        +D   I
Sbjct: 876  IQHPANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIRMLEDLTG-----IDAKTI 929

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII-ALVSLYRPGPIDNIVV 660
            PFDD +T  L ++   +G+   +  G + A   + P+C    +  ++   RP    ++V 
Sbjct: 930  PFDDPKTLSLFSSTEGIGLTPEQLQGDQVASLAV-PECGTKFVRGMLEDSRPQTFSDLVR 988

Query: 661  YNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRA 716
             +   +G    + +   LI     +    I  ++ VM       +   +S    + +R+ 
Sbjct: 989  ISGFSHGTNVWLDNAQDLIKNGTCKLNEAISTRDDVMNFLIHRGMDRKHSFFVMENVRKG 1048

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             G + + +  +    F +   +N I +      F    K   Y F ++HA AY +++++ 
Sbjct: 1049 KGIEKRNKQGQATTEFEAEMRENNIPE-----WFIESCKKISYLFPRAHAVAYVMMAFRI 1103

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            AW K ++P+ F AA  ++              A+ F+++IM   + T   +F    NRI
Sbjct: 1104 AWFKVYHPLAFYAAYFSIR-------------AKAFDLRIMTGDLKTQMTEF----NRI 1145


>gi|143342|gb|AAA22666.1| polymerase III [Bacillus subtilis]
          Length = 1437

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 191/948 (20%), Positives = 349/948 (36%), Gaps = 233/948 (24%)

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G Q   ++ +N+  +N  +   P   +++ + ST  G + L +LVS  ++     +  RI
Sbjct: 589  GIQYHDELNENMGQSNAYQRSRPYHATLLAVNST--GLKNLFKLVSLSHI-HYFYRVPRI 645

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--------KKLFGDRLY 183
              S L++   EGL++ +    G +       S +  E  + +F         +++   L 
Sbjct: 646  PRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVED-IASFYDYLEVQPPEVYRHLLE 703

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQ 242
            + L R     +   + + +L      P+VAT N  +L++ED     +L++    +  +++
Sbjct: 704  LELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIYRKILISSQGGANPLNR 763

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFI 296
             + P+V    + +   EM+  FS L E       + NT ++A     I  +   +    I
Sbjct: 764  HELPKV----HFRTTDEMLEAFSFLGEEKAKEIVVTNTQKVASLVDDIKPIKDDLYTPKI 819

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            E   ++I+  E +  R +++ G E+             +    R++ EL  I    F+  
Sbjct: 820  EGADEEIR--ESSYQRARSIYGEEL------------PEIVEARIEKELKSIIGHGFAVI 865

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------------ 398
            +LI    ++ +  +   VG  RGS   S+ A    IT+++PL                  
Sbjct: 866  YLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLPPHYVCPECQHSEFFNDG 924

Query: 399  -----------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                      + FE FL      +PD D++F  + + +   Y +
Sbjct: 925  SVGSGFDLPDKTCPHCGTPLKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPQAHNYTK 984

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G + V +  T G++  K A           Y  V                 +  A+D
Sbjct: 985  VLFGEDNVYRAGTIGTVAEKTA-----------YGYV-----------------KGYAED 1016

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
            +      +    +DRL+   Q   G+ R    H  GI++        VP Y D+    P+
Sbjct: 1017 NNLH---MRGAEIDRLV---QGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFSPI 1062

Query: 556  -------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    L+K D LG    T+++   D        +D   IP
Sbjct: 1063 QFPADATGSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIP 1116

Query: 603  FDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             DD E   +                  GTLGI +  +  +RQ LE  +P    +++ +  
Sbjct: 1117 TDDPEVMKIFQGTESLGVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISG 1176

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            L         V   N ++          LI   + E   VI  ++ +M +  +  G   S
Sbjct: 1177 LSH----GTDVWLGNAQD----------LIHNNICELSEVIGCRDDIM-VYLIYQGLEPS 1221

Query: 709  EA----DVLRRAMG--KKIKEEMDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYG 760
             A    + +R+  G   + +EEM      + +I    K                    Y 
Sbjct: 1222 LAFKIMEFVRKGKGLTPEWEEEMKNNNVPDWYIDSCKK------------------IKYM 1263

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQ 811
            F K+HAAAY +++ + A+ K H+ + + AA  T+  D+ +          I+   +D   
Sbjct: 1264 FPKAHAAAYVLMAVRIAYFKVHHALLYYAAYFTVRADDFDIDTMIKGSTAIRAVMEDINA 1323

Query: 812  FNIQIMPPSVN-------------------------TPCVDFKVGDNRIYYSLAAIKGVG 846
              +   P   N                         +   +F +  N +     +I G+G
Sbjct: 1324 KGLDASPKEKNLLTVLELALEMCERGYSFQKVDLYRSSATEFIIDGNSLIPPFNSIPGLG 1383

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            T  A +I++A  +  F S EDF  R    K+++ +LE L   G L+  
Sbjct: 1384 TNAALNIVKAREEGEFLSKEDFEKR---GKVSKTILEYLDRHGCLESL 1428


>gi|206972660|ref|ZP_03233601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus AH1134]
 gi|218234060|ref|YP_002368619.1| DNA polymerase III PolC [Bacillus cereus B4264]
 gi|228960034|ref|ZP_04121698.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            pakistani str. T13001]
 gi|229047504|ref|ZP_04193094.1| DNA polymerase III polC-type [Bacillus cereus AH676]
 gi|229071316|ref|ZP_04204539.1| DNA polymerase III polC-type [Bacillus cereus F65185]
 gi|229081073|ref|ZP_04213583.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
 gi|229111289|ref|ZP_04240842.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
 gi|229129094|ref|ZP_04258067.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
 gi|229152017|ref|ZP_04280212.1| DNA polymerase III polC-type [Bacillus cereus m1550]
 gi|229180094|ref|ZP_04307438.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
 gi|229191987|ref|ZP_04318957.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
 gi|296504313|ref|YP_003666013.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
 gi|206732417|gb|EDZ49598.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus AH1134]
 gi|218162017|gb|ACK62009.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus B4264]
 gi|228591538|gb|EEK49387.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
 gi|228603303|gb|EEK60780.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
 gi|228631366|gb|EEK88000.1| DNA polymerase III polC-type [Bacillus cereus m1550]
 gi|228654331|gb|EEL10196.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
 gi|228672065|gb|EEL27356.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
 gi|228702117|gb|EEL54593.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
 gi|228711770|gb|EEL63722.1| DNA polymerase III polC-type [Bacillus cereus F65185]
 gi|228723751|gb|EEL75106.1| DNA polymerase III polC-type [Bacillus cereus AH676]
 gi|228799550|gb|EEM46503.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            pakistani str. T13001]
 gi|296325365|gb|ADH08293.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
          Length = 1433

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 198/922 (21%), Positives = 342/922 (37%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 782  EDKAKEVVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822  TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 881  SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPACNIPY 940

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 941  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEK 1000

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1001 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1026

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1027 AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQYPADSIGAEWRTTHFDFHS 1078

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        +D   IP DD E   + +         
Sbjct: 1079 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTE 1132

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1133 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1193 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1235

Query: 725  MDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  K   + G   +   K               Y F K+HAAAY +++ + A+ K H+
Sbjct: 1236 WEEDMKNNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------ 822
             + F AA  T+  D  +VE + K     R       Q  +   P   +            
Sbjct: 1283 ALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    K+++ ++E L   G L
Sbjct: 1403 QR---SKVSKTIIEYLDSQGCL 1421


>gi|325290365|ref|YP_004266546.1| DNA polymerase III, alpha subunit [Syntrophobotulus glycolicus DSM
            8271]
 gi|324965766|gb|ADY56545.1| DNA polymerase III, alpha subunit [Syntrophobotulus glycolicus DSM
            8271]
          Length = 1250

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 208/1002 (20%), Positives = 377/1002 (37%), Gaps = 232/1002 (23%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S ++   S  +++ + A     AIAITD   + +  +  + A  +GI+ I+
Sbjct: 349  VELHLHTKMSEMDAVSSAQSLVRRAALWGHQAIAITDHGVVQAFPDAVESAEKSGIKVIL 408

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  + ++D+ +  +QG         +++L     G   L +LV+  ++ +   +  RI
Sbjct: 409  GMEGYL-IEDDPQ--SQGYY------HVIILAKNQTGLNNLYQLVTGSHI-EHFYRRPRI 458

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--H 189
              S L++   EGLI+ +   +G + RA    +S    K++ +F      +   N Q    
Sbjct: 459  SKSQLKKY-REGLIIGSACEAGELMRAVLRQASWEDLKKIASFYDYLEIQPTGNNQFLIP 517

Query: 190  RGYDRYRES------QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +G  R  E        +V+L      P+ AT +  FL  ED     +LMA         +
Sbjct: 518  KGEIRDEEGLRDLNRTIVKLGDELGKPVAATCDVHFLDAEDEVFRRILMAGK-----GYE 572

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIE 297
            D     P  Y +   EM+  FS L E       + NTV IA      ++   P    F E
Sbjct: 573  DADTQAP-LYFRTTDEMLEEFSYLGEDKAYEVVVTNTVAIAEG----IENLKPFPDGFFE 627

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY--------RQRLDFELNVIA 349
             +                + G   R+ + A+ K   A+ Y         + L  EL+ I 
Sbjct: 628  PK----------------IEGAAERIKEMALKKA--AEQYGDPLPDTVAKALQKELHSII 669

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL-------RFSL 402
               F+  +LI    ++ + ++   VG  RGS   S+ A    IT+++PL         S 
Sbjct: 670  GNGFAVLYLIAHLLVKKSNEDGYLVG-SRGSVGSSLVATMTGITEVNPLPPHYHCTNPSC 728

Query: 403  LFERFLN----------PDRMS--------------------------MPDFDIDFCQDR 426
            L+  FL           PD+                            +PD D++F  + 
Sbjct: 729  LYSEFLTDGSAGSGVDLPDKTCPRCGLELSKDGHDIPFETFLGFKGDKVPDIDLNFSGEY 788

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +    +Y +  +G E V +  T  ++  K A   V   L                     
Sbjct: 789  QPRAHKYTEEIFGKENVFRAGTISTVAEKTAFGFVKNYLDE------------------- 829

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVP 544
                        R  +     ++RL+   +   G+ R    H  G+++  +        P
Sbjct: 830  ------------RSIKYNQTELNRLV---RGCAGVKRTTGQHPGGLMVIPKECDVYNFTP 874

Query: 545  MYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            + +   D +++   T F+   I    L+K D LG    T+++   DF       +D   I
Sbjct: 875  LQKPANDSKTETITTHFDYHSI-SGRLVKLDILGHDDPTMIKMLEDFTG-----IDAQEI 928

Query: 602  PFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
              DD  T  L ++               GT G+ +  +  +RQ LE  +P     ++ + 
Sbjct: 929  RLDDERTLSLFSSPEALGVKAEDIGSNTGTFGVPEFGTKFVRQMLEDTKPKTFSHLVRIS 988

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             L       N+ + N +              D +L  T  +     Q++     +  Y +
Sbjct: 989  GLSHG---TNVWLGNAQ--------------DLVLNGTADI----SQIIACRDDIMVYLI 1027

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL---AKFADYGFNKS 764
             +    ++A   KI E++ K K     G   + + + +  N+ +      +   Y F K+
Sbjct: 1028 QKGLDPQKAF--KIMEQVRKGK-----GLKADDVEEMLQFNVPQWYIDSCQKISYMFPKA 1080

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLE------------MDNVEKIKK----FCQD 808
            HA AY +++++ AW K + P  F AA  T+             +D+ +KI      F   
Sbjct: 1081 HAVAYVMMAFRIAWFKLNCPEAFYAAFFTVRAEEFDAEMICQGLDHCKKIAAEMAGFGNK 1140

Query: 809  ARQFN---IQIMPPSVNTPC-------VD--------FKVGDNRIYYSLAAIKGVGTTTA 850
            A Q     + I+  ++   C       VD        F++ D  I    ++I+G+G T A
Sbjct: 1141 ATQKEKGLLTILELAIEMYCRGISLRKVDLWESDATTFQITDTGILPPFSSIQGLGETAA 1200

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              ++    +    S+ED  +     K+++ V+E L   G L+
Sbjct: 1201 NSLVALRRENKIRSVEDMQT---FGKISKPVVEVLQKHGCLN 1239


>gi|308173621|ref|YP_003920326.1| DNA polymerase III subunit alpha [Bacillus amyloliquefaciens DSM 7]
 gi|307606485|emb|CBI42856.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens DSM 7]
 gi|328553447|gb|AEB23939.1| DNA polymerase III PolC [Bacillus amyloliquefaciens TA208]
 gi|328911762|gb|AEB63358.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens LL3]
          Length = 1437

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 167/804 (20%), Positives = 293/804 (36%), Gaps = 200/804 (24%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKN 256
            + + +L      P+VAT N  +L++ED     +L++    +  +++ + P+V    + + 
Sbjct: 718  TNITKLGEKLNKPVVATGNVHYLNDEDKIYRKILVSSQGGANPLNRHELPKV----HFRT 773

Query: 257  RSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE--EENELR 312
              EM+  FS L   +A E  VE  ++ + +++   PI       + D   +E  E +  R
Sbjct: 774  TDEMLDAFSFLGAEKAKEIVVENTQKVASMIEEIKPIKDDLYTPKIDGADEEIREMSYQR 833

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             +++ G E+             +    R++ EL  I    F+  +LI    ++ +  +  
Sbjct: 834  ARSIYGEEL------------PEIVEARIEKELKSIIGHGFAVIYLISHKLVKRSLDDGY 881

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPL---------RFS---------------------- 401
             VG  RGS   S+ A    IT+++PL         R+S                      
Sbjct: 882  LVG-SRGSVGSSLVATLTEITEVNPLAPHYVCPSCRYSEFFNDGSVGSGFDLPDKSCPSC 940

Query: 402  ----------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                      + FE FL      +PD D++F  + +     Y +  +G + V +  T G+
Sbjct: 941  GTPLKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHNYTKVLFGEDNVYRAGTIGT 1000

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            +  K A           Y  V                 +  A D       +    +DRL
Sbjct: 1001 VAEKTA-----------YGYV-----------------KGYAGDHNLH---MRGAEIDRL 1029

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQF 558
            +   Q   G+ R    H  GI++        VP Y D+    P+             T F
Sbjct: 1030 V---QGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFSPIQFPADATGSEWKTTHF 1078

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL------ 612
            +   I    L+K D LG    T+++   D        +D   IP DD E   +       
Sbjct: 1079 DFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFQGTESL 1132

Query: 613  --------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
                       GTLGI +  +  +RQ LE  +P    +++ +  L     +         
Sbjct: 1133 GVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHGTDV-------WL 1185

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             N +E       LI     E   VI  ++ +M +  +  G        L  ++  KI E 
Sbjct: 1186 GNAQE-------LIHNNTCELSEVIGCRDDIM-VYLIYQG--------LEPSLAFKIMEF 1229

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + K K   ++   +  + K    N +    K   Y F K+HAAAY +++ + A+ K H+ 
Sbjct: 1230 VRKGKG--LTPEWEEEMKKNNVPNWYIDSCKKIKYMFPKAHAAAYVLMAVRIAYFKVHHA 1287

Query: 785  VEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVNTPCV--------- 826
            + + AA  T+  D+ +          I+    D     +   P   N   V         
Sbjct: 1288 LLYYAAYFTVRADDFDIDTMIKGSTAIRAVMDDISSKGLDASPKEKNLLTVLELALEMCE 1347

Query: 827  ----------------DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
                            +F +  N +     +I G+GT  A +I++A  +  F S ED   
Sbjct: 1348 RGYSFQKVDLYRSSASEFIIDGNSLIPPFNSIPGLGTNAALNIVKAREEGEFLSKEDLQK 1407

Query: 871  RVDSKKLNRRVLESLVFAGALDCF 894
            R    K+++ +LE L   G L+  
Sbjct: 1408 R---GKVSKTILEYLDRHGCLESL 1428


>gi|229174484|ref|ZP_04302016.1| DNA polymerase III polC-type [Bacillus cereus MM3]
 gi|228609044|gb|EEK66334.1| DNA polymerase III polC-type [Bacillus cereus MM3]
          Length = 1433

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 197/922 (21%), Positives = 341/922 (36%), Gaps = 234/922 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  ++  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYIDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 782  EDVAKEIVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822  TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 881  SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPACNVPY 940

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 941  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEK 1000

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1001 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1026

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1027 AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQFPADSIGAEWRTTHFDFHS 1078

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        +D   IP DD E   + +         
Sbjct: 1079 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTE 1132

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1133 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1193 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1235

Query: 725  M-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
              D  K   + G   +   K               Y F K+HAAAY +++ + A+ K H+
Sbjct: 1236 WEDDMKSNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHF 1282

Query: 784  PVEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------ 822
             + F AA  T+  D  ++E + K     R       Q  +   P   +            
Sbjct: 1283 ALLFYAAYFTVRADDFDIEAMAKGSASIRVRIDEIAQKGLDAAPKEKSLLTVLEMTLEMC 1342

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED  
Sbjct: 1343 ERGYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQ 1402

Query: 870  SRVDSKKLNRRVLESLVFAGAL 891
             R    K+++ ++E L   G L
Sbjct: 1403 QR---SKVSKTIIEYLDSQGCL 1421


>gi|167750041|ref|ZP_02422168.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702]
 gi|167657062|gb|EDS01192.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702]
          Length = 1605

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 162/772 (20%), Positives = 287/772 (37%), Gaps = 153/772 (19%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++LV    G + L  L+S   L D   +  RI  S L +   EGLI+ +   +G + RA 
Sbjct: 783  IILVKNKVGLKNLYRLISASNL-DYFYKKPRIPKSLLSQY-REGLIIGSACEAGELFRAI 840

Query: 160  FFNSSQVAEKRLLTFKKLF-----GDRLYV--NLQRHRGYD-RYRESQVVQLAYTHELPL 211
                SQ   + + +F         G+ +++  N +     D R     +VQL      P+
Sbjct: 841  LEKESQEKIEEIASFYDYLEIQPIGNNMFLLRNGKVSSEEDLRDLNRAIVQLGDRLGKPV 900

Query: 212  VATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
            VAT +  F   ED    +VL A   +    +Q       P  Y +   EM+  F+ L E 
Sbjct: 901  VATCDVHFKDPEDAVFREVLQAGQGYEDFANQ-------PPLYFRTTDEMLEEFAYLGEE 953

Query: 270  -ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
             A E  +    R + +++V  PI         D   +E +    ++A A     L +   
Sbjct: 954  KAKEVVITNTNRIADMIEVVRPIPTGTYTPHIDGADEELQQLCWDRAHAWYGDDLPETV- 1012

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                      +RL  EL+ I +  F+  ++I    + +++KN   VG  RGS   SV A 
Sbjct: 1013 ---------EKRLKKELDSIIKHGFAVLYMIAQKLVAFSEKNGYLVG-SRGSVGSSVVAI 1062

Query: 389  ALTITDIDPL-----------------------------------------RFSLLFERF 407
               I++++PL                                            + FE F
Sbjct: 1063 MAGISEVNPLPPHYRCPKCRHNEFILDGSYGSGFDLPPKKCPNCDIDMIRDGHDIPFETF 1122

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            L  D    PD D++F  + + +V RY +  +G + V +  T  ++Q K A   V + L+ 
Sbjct: 1123 LGFDGDKSPDIDLNFSGEVQGKVHRYTEELFGKDHVFKAGTISAVQEKTAEGFVRKWLE- 1181

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                                           ++   A+ +   +  ++    G+ R  S 
Sbjct: 1182 -------------------------------KKGMTANSA--EISRLAAGCTGVKRTTSQ 1208

Query: 528  HAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            H  G+V+   D  +     +        SD+  T F+   +    ++K D LG    TL 
Sbjct: 1209 HPGGMVVVPSDYEVYDFTAVQHPADKTESDMITTHFDFHALHDT-ILKLDELGHDVPTLY 1267

Query: 583  QKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKGTLGIFQLESSGM 628
            +   D     G+K+  + +P  D +   L T              + GT GI +  +   
Sbjct: 1268 KHLEDM---TGIKI--ADVPTSDPKVMELFTSTEPLGIKEEDLGVSSGTYGIPEFGTPFT 1322

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
             Q L+  QP    D++ +  L       ++ + N ++   + I +I  +I         +
Sbjct: 1323 LQMLKDAQPKKFSDLLQISGLSHGT---DVWLGNAQELISDGICTISEVIGC----RDDI 1375

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++Y    +    L    +    ++ R+   KK+        E       +N + +    +
Sbjct: 1376 MVY----LMHQGLEPKLAFKIMEITRKGNAKKL------FNEDIYKAFEENNVPQWYIES 1425

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
                  K   Y F K+HAAAY   + +  W K +YP EF +A +T   +N++
Sbjct: 1426 -----CKKIKYMFPKAHAAAYVTGAVKLCWFKVYYPSEFYSAVLTKHTENID 1472


>gi|116492651|ref|YP_804386.1| DNA polymerase III PolC [Pediococcus pentosaceus ATCC 25745]
 gi|122265885|sp|Q03FS8|DPO3_PEDPA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116102801|gb|ABJ67944.1| DNA polymerase III catalytic subunit, PolC type [Pediococcus
            pentosaceus ATCC 25745]
          Length = 1437

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 195/898 (21%), Positives = 333/898 (37%), Gaps = 229/898 (25%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            +L+  T  G + L +LVS M  +    +  RI  S L+++  EG+I+ +  SSG +  A 
Sbjct: 614  ILIAKTQAGLKNLFKLVS-MSNVKYYYRVPRIPRSELEKL-REGIIVGSACSSGDVFTAM 671

Query: 160  FFNSSQVAEKR--LLTFKKLFGDRLYVNLQRHRGYDRYRE-----SQVVQLAYTHELPLV 212
                   A ++     + ++    +Y  L         ++     + +V+L    ++P+V
Sbjct: 672  MQKGYADARRKAKFYDYLEVMPKPVYQPLIEQELVSDNKKLEEIIANIVKLGEDLDIPVV 731

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL-PE-- 269
            AT +  +L+ +DY    +L  +      +  +R  + PD + +   EM+  FS L PE  
Sbjct: 732  ATGDVHYLNPQDYIYRKIL--INSQGGANPLNRSEL-PDVHFRTTDEMLEDFSFLGPEVA 788

Query: 270  ---ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
                +EN+ +IA                      DD     +++L    + G E R+ Q 
Sbjct: 789  HKIVVENSNKIA-------------------DSVDDGISPVKDKLYTPKMPGAEDRIKQL 829

Query: 327  AIAKGYHA-------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
            ++ +  HA       +  ++RLD EL  I    FS  +LI    +  + K+   VG  RG
Sbjct: 830  SMDRA-HALYGEVLPEIVQERLDKELTSIIGNGFSVIYLIAQRLVHKSNKDGYLVG-SRG 887

Query: 380  SGAGSVTAYALTITDIDPL---------RFSLL--------------------------- 403
            S   S  A    IT+++PL         ++S                             
Sbjct: 888  SVGSSFVATMSGITEVNPLPPHYRCPKCQYSFFYTKGEYGSGYDLPDKECPECGTWMIGD 947

Query: 404  -----FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
                 FE FL      +PD D++F  D +     Y+Q  +G + V +  T G++  K A 
Sbjct: 948  GQDIPFETFLGFKGDKVPDIDLNFSGDYQPIAHNYMQVLFGKDNVFRAGTIGTVADKTAF 1007

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V +A +   +Q                               L    ++RL   ++  
Sbjct: 1008 GYV-KAYERDTNQ------------------------------HLRGAEIERL---AKGA 1033

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEK 565
             G+ R    H AGI+I        VP Y DV    P+             T F+   I  
Sbjct: 1034 TGVKRTTGQHPAGILI--------VPDYMDVYDFSPIQYPADDQTAAWETTHFDFHSIHD 1085

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL------------- 612
              ++K D LG    T+++K  D        +D   IP DD     +              
Sbjct: 1086 -NILKMDILGHDDPTMIRKLQDLSG-----IDPETIPTDDPGVMKIFSGPEVLGVDENQI 1139

Query: 613  -TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
             +  GTLGI +  +  +R  LE   P    +++ +  L       ++ + N  +  K   
Sbjct: 1140 QSKTGTLGIPEFGTRFVRGMLEETHPTSYSELLQISGLSHG---TDVWLGNAEELIKAGT 1196

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
            V+        LKE  G    ++ +M     L  Y L      +      I E + K K  
Sbjct: 1197 VT--------LKEVIGC---RDNIMMD---LIHYGLDSQSSFQ------IMESVRKGK-- 1234

Query: 732  FISGASKNGISKTIAVNI----FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
               G  +    K  A N+     E   K   Y F ++HA+AY +++ + A+ K +YP+ +
Sbjct: 1235 ---GIPEGYEDKMRAANVPDWYIESCGKIK-YMFPRAHASAYVLMALRIAYFKVYYPLVY 1290

Query: 788  LAASMTLEMDNV---------EKIKKFCQD---------ARQFNI--------QIMPPSV 821
             AA  T+  D+          E +K   Q+          ++ N+        +++    
Sbjct: 1291 YAAYFTVRADDFDIVSMARGKESLKNRMQEINDKGNDASTKEKNLLTVLELANEMLERGF 1350

Query: 822  NTPCVDFKVGD--------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                +D +  D          +     A+ G+G   A+ I+ A ADKPF S ED   R
Sbjct: 1351 EFKMIDIEKSDAEEWLIEGKSLIAPFNALPGLGLNVAKQIVAARADKPFLSKEDLSKR 1408


>gi|199597102|ref|ZP_03210534.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus
            rhamnosus HN001]
 gi|199591906|gb|EDY99980.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus
            rhamnosus HN001]
          Length = 1444

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 187/909 (20%), Positives = 342/909 (37%), Gaps = 210/909 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++   T  G + L +LVS +  +    +  R+  S LQ++  EGL++ +  SSG +  A 
Sbjct: 615  IVFAKTQAGLKNLFKLVS-LSNVKYFYRVPRVPRSQLQKL-REGLLVGSACSSGEVFTAM 672

Query: 160  FFNSSQVAEKRLLTFKKL-------FGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                   A  +   +  L       +   L  +L +   + +    ++V++    E P+V
Sbjct: 673  MQKGEAEARAKAAFYDYLEIQPPAVYQPLLEADLIKGESHLKDILQKIVKIGDELEKPVV 732

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE 272
             T +  +L + D     +L+   HS   +        PD + ++  EM+  FS L E   
Sbjct: 733  VTGDVHYLDQHDAIYRKILI---HSQGGANPLNHHSLPDVHFRSTREMLDDFSWLGE--- 786

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
                   +   ++  ++ ++  +I    DD     +++L    V G+E +L    +A  Y
Sbjct: 787  ------EKAQQLVVTNSNLIADWI----DDNITPVKDKLYTPEVPGVEEKLKHDVMATAY 836

Query: 333  H------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                    +   QRLD EL  I    FS  + I    +  + K+   VG  RGS   S+ 
Sbjct: 837  ELYGNPLPEIVAQRLDKELKSIIGNGFSVIYNIAQRLVLKSNKDGYLVG-SRGSVGSSLA 895

Query: 387  AYALTITDIDPL---------RFS--------------------------------LLFE 405
            A    IT+++PL         ++S                                + FE
Sbjct: 896  ATMAEITEVNPLPPHYRCPKCQYSEFFTHGEVGSGFDLPDKTCPKCGTELHKDGHDIPFE 955

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL------- 458
             FL      +PD D++F  D +     Y++  +G +   +  T G++  K A        
Sbjct: 956  TFLGFHGDKVPDIDLNFSGDYQPVAHNYIKVMFGEDHSFRAGTIGTVADKTAYGYVKAYE 1015

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
            RD G+  Q+  +++DRL                                       +Q  
Sbjct: 1016 RDTGQ--QLRGAEIDRL---------------------------------------AQGD 1034

Query: 519  EGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             G+ R    H AGI+I   D  +    P+     D  +    T F+   I    ++K D 
Sbjct: 1035 TGVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTTHFDFHSIHD-NILKMDV 1093

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLG 619
            LG    T+++   D        V+   IP DD     L +                GTLG
Sbjct: 1094 LGHDDPTMIRMLQDLSG-----VEPKSIPTDDPGVMALFSGTESLGVTPEQINSKMGTLG 1148

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            I +  +  +R  LE  +P    +++ +  L       ++ + N  +  K+ IV+      
Sbjct: 1149 IPEFGTRFVRGMLEETKPTTFSELLQISGLSHG---TDVWLGNAEELIKQGIVT------ 1199

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
              LKE   VI  ++ +M     L  + + +      +M   I E +  +K R I    + 
Sbjct: 1200 --LKE---VIGCRDNIMMD---LIHWGMDD------SMAFNIMEHV--RKGRGIPDDWQK 1243

Query: 740  GISKTIAVNIFELLAKFA-DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             + +   V  + + +     Y F K+HA AY +++ + AW K HYP+ +  A  ++  ++
Sbjct: 1244 AMRENENVPDWYIDSCLKIKYMFPKAHATAYILMALRIAWFKVHYPLVYYTAYFSVRAED 1303

Query: 799  ----------------VEKIKKFCQDARQFNIQIMPP-SVNTPCVD--FKV--------- 830
                            +++I     DA     Q++    +   C++  FK+         
Sbjct: 1304 FDLAAMSHGKEAVKAAMKEITDKGMDASAKEKQLLTVLEIANECLERGFKIKMIDVTKSD 1363

Query: 831  -------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                    D+ I     A+ G+G   A+ I+ A  +KPF S ED  +R    K+++ +++
Sbjct: 1364 SHDFLIQDDHTILAPFRAVPGLGDNVAKQIVAAREEKPFLSKEDLANR---GKVSKTLID 1420

Query: 884  SLVFAGALD 892
             +     LD
Sbjct: 1421 YMTTNHVLD 1429


>gi|229162754|ref|ZP_04290711.1| DNA polymerase III polC-type [Bacillus cereus R309803]
 gi|228620636|gb|EEK77505.1| DNA polymerase III polC-type [Bacillus cereus R309803]
          Length = 1433

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 194/919 (21%), Positives = 340/919 (36%), Gaps = 228/919 (24%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDGMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  EALENTVEIA---RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--EVRL 323
            E +   + +    +  S I  VH P+                +++L    + G   E R 
Sbjct: 782  EDVAKEIVVTNTQKVASLIGDVH-PV----------------KDDLYTPKIEGADDETRD 824

Query: 324  AQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG  RG
Sbjct: 825  MSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRG 883

Query: 380  SGAGSVTAYALTITDIDPL----------------------------------------- 398
            S   S  A  + IT+++PL                                         
Sbjct: 884  SVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPACNVPYVKD 943

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K A 
Sbjct: 944  GHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEKTA- 1002

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
                      Y  V                 +  A+D       + +  +DRL+      
Sbjct: 1003 ----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV---SGC 1029

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEK 565
             G+ R    H  GI++        VP Y D+    P+             T F+   I  
Sbjct: 1030 TGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQFPADSIGAEWRTTHFDFHSIHD 1081

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT------------ 613
              L+K D LG    T+++   D        +D   IP DD E   + +            
Sbjct: 1082 -NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTEEQI 1135

Query: 614  --TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNRKNG 667
                GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN     
Sbjct: 1136 NCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGTCTL 1195

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE ++
Sbjct: 1196 SEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEEWEE 1238

Query: 728  Q-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              K   + G   +   K               Y F K+HAAAY +++ + A+ K H+ + 
Sbjct: 1239 DMKSNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHFALL 1285

Query: 787  FLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN--------------- 822
            F AA  T+  D  +VE + K     R       Q  +   P   +               
Sbjct: 1286 FYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCERG 1345

Query: 823  ----------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                      +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R 
Sbjct: 1346 YSFQKVDLYRSHATEFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR- 1404

Query: 873  DSKKLNRRVLESLVFAGAL 891
               K+++ ++E L   G L
Sbjct: 1405 --SKVSKTIIEYLDSQGCL 1421


>gi|157692337|ref|YP_001486799.1| DNA polymerase III PolC [Bacillus pumilus SAFR-032]
 gi|157681095|gb|ABV62239.1| DNA-directed DNA polymerase III alpha subunit [Bacillus pumilus
            SAFR-032]
          Length = 1437

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 167/808 (20%), Positives = 285/808 (35%), Gaps = 208/808 (25%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKN 256
            + +V+L      P+VAT N  +L  ED     +L++    +  +++ + P+V    + + 
Sbjct: 718  TNIVKLGEKLNKPVVATGNVHYLHPEDKIYRKILISSQGGANPLNRHELPKV----HFRT 773

Query: 257  RSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
              EM+  FS L E  A E  V   ++ S +++   PI                +++L   
Sbjct: 774  TDEMLEAFSFLGEEKAKEIVVTNTKKVSEMVESIKPI----------------KDDLYTP 817

Query: 315  AVAGL--EVRLAQGAIAKGYHAQDY----RQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             + G   E+R     +A+  +  D       R++ EL  I    F+  +LI    ++ + 
Sbjct: 818  KIEGADEEIREMSYQMARSIYGDDLPKIVEDRIEKELKSIIGHGFAVIYLISHKLVKKSL 877

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------------- 399
             +   VG  RGS   S+ A    IT+++PL                              
Sbjct: 878  DDGYLVG-SRGSVGSSLVATLTEITEVNPLAPHYVCPSCKHSEFFNDGSVGSGFDLPDKD 936

Query: 400  ------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                          + FE FL      +PD D++F  + +     Y +  +G E V +  
Sbjct: 937  CPECGTPYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPIAHNYTKELFGEEYVYRAG 996

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G++  K A           Y  V                 +  A D       +    
Sbjct: 997  TIGTVAEKTA-----------YGYV-----------------KGYAGDHNLH---MRGAE 1025

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR-------------SDLP 554
            +DRL+   Q   G+ R    H  GI++        VP Y D+              SD  
Sbjct: 1026 IDRLV---QGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFSPIQFPADATGSDWK 1074

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-- 612
             T F+   I    L+K D LG    T+++   D        +D   IP DD E   +   
Sbjct: 1075 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFQG 1128

Query: 613  ------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                           GTLGI +  +  +RQ LE  +P    +++ +  L     +     
Sbjct: 1129 TEPLGVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHGTDV----- 1183

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                 N +E       LI     E   VI  ++ +M +  +  G        L  ++  K
Sbjct: 1184 --WLGNAQE-------LIHNKTCELSEVIGCRDDIM-VYLIYQG--------LEPSLAFK 1225

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I E + K K   +    +  +      N +    K   Y F K+HAAAY +++ + A+ K
Sbjct: 1226 IMESVRKGKG--LPPEWEEEMKNNNVPNWYIDSCKKIKYMFPKAHAAAYVLMAVRIAYFK 1283

Query: 781  THYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVN--------- 822
             H+ + + AA  T+  D+ +          I+    D     +   P   N         
Sbjct: 1284 VHHALLYYAAYFTVRADDFDIETMTKGSNAIRAVMDDINSKGLDASPKEKNLLTVLELAL 1343

Query: 823  ----------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
                            +   +F +  + +     +I G+GT  A +I+ A  D  F S E
Sbjct: 1344 EMCERGYHFKKVDLYRSSATEFIIDGDGLIPPFNSIPGLGTNVALNIVRARQDGEFLSKE 1403

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCF 894
            D   R    K+++ +LE L   G L+  
Sbjct: 1404 DLQKR---GKVSKTILEYLDRQGCLEAL 1428


>gi|258508612|ref|YP_003171363.1| DNA polymerase III PolC [Lactobacillus rhamnosus GG]
 gi|257148539|emb|CAR87512.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
 gi|259649919|dbj|BAI42081.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
          Length = 1444

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 187/909 (20%), Positives = 342/909 (37%), Gaps = 210/909 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++   T  G + L +LVS +  +    +  R+  S LQ++  EGL++ +  SSG +  A 
Sbjct: 615  IVFAKTQAGLKNLFKLVS-LSNVKYFYRVPRVPRSQLQKL-REGLLVGSACSSGEVFTAM 672

Query: 160  FFNSSQVAEKRLLTFKKL-------FGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                   A  +   +  L       +   L  +L +   + +    ++V++    E P+V
Sbjct: 673  MQKGEAEARAKAAFYDYLEIQPPAVYQPLLEADLIKGESHLKDILQKIVKIGDELEKPVV 732

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE 272
             T +  +L + D     +L+   HS   +        PD + ++  EM+  FS L E   
Sbjct: 733  VTGDVHYLDQHDAIYRKILI---HSQGGANPLNRHSLPDVHFRSTREMLDDFSWLGE--- 786

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
                   +   ++  ++ ++  +I    DD     +++L    V G+E +L    +A  Y
Sbjct: 787  ------EKAQQLVVTNSNLIADWI----DDNITPVKDKLYTPEVPGVEEKLKHDVMATAY 836

Query: 333  H------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                    +   QRLD EL  I    FS  + I    +  + K+   VG  RGS   S+ 
Sbjct: 837  ELYGNPLPEIVAQRLDKELKSIIGNGFSVIYNIAQRLVLKSNKDGYLVG-SRGSVGSSLA 895

Query: 387  AYALTITDIDPL---------RFS--------------------------------LLFE 405
            A    IT+++PL         ++S                                + FE
Sbjct: 896  ATMAEITEVNPLPPHYRCPKCQYSEFFTHGEVGSGFDLPDKTCPKCGTELHKDGHDIPFE 955

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL------- 458
             FL      +PD D++F  D +     Y++  +G +   +  T G++  K A        
Sbjct: 956  TFLGFHGDKVPDIDLNFSGDYQPVAHNYIKVMFGEDHSFRAGTIGTVADKTAYGYVKAYE 1015

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
            RD G+  Q+  +++DRL                                       +Q  
Sbjct: 1016 RDTGQ--QLRGAEIDRL---------------------------------------AQGD 1034

Query: 519  EGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             G+ R    H AGI+I   D  +    P+     D  +    T F+   I    ++K D 
Sbjct: 1035 TGVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTTHFDFHSIHD-NILKMDV 1093

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLG 619
            LG    T+++   D        V+   IP DD     L +                GTLG
Sbjct: 1094 LGHDDPTMIRMLQDLSG-----VEPKSIPTDDPGVMALFSGTESLGVTPEQINSKMGTLG 1148

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            I +  +  +R  LE  +P    +++ +  L       ++ + N  +  K+ IV+      
Sbjct: 1149 IPEFGTRFVRGMLEETKPTTFSELLQISGLSHG---TDVWLGNAEELIKQGIVT------ 1199

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
              LKE   VI  ++ +M     L  + + +      +M   I E +  +K R I    + 
Sbjct: 1200 --LKE---VIGCRDNIMMD---LIHWGMDD------SMAFNIMEHV--RKGRGIPDDWQK 1243

Query: 740  GISKTIAVNIFELLAKFA-DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             + +   V  + + +     Y F K+HA AY +++ + AW K HYP+ +  A  ++  ++
Sbjct: 1244 AMRENENVPDWYIDSCLKIKYMFPKAHATAYILMALRIAWFKVHYPLVYYTAYFSVRAED 1303

Query: 799  ----------------VEKIKKFCQDARQFNIQIMPP-SVNTPCVD--FKV--------- 830
                            +++I     DA     Q++    +   C++  FK+         
Sbjct: 1304 FDLAAMSHGKEAVKAAMKEITDKGMDASAKEKQLLTVLEIANECLERGFKIKMIDVTKSD 1363

Query: 831  -------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                    D+ I     A+ G+G   A+ I+ A  +KPF S ED  +R    K+++ +++
Sbjct: 1364 SHDFLIQDDHTILAPFRAVPGLGDNVAKQIVAAREEKPFLSKEDLANR---GKVSKTLID 1420

Query: 884  SLVFAGALD 892
             +     LD
Sbjct: 1421 YMTTNHVLD 1429


>gi|229031448|ref|ZP_04187448.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
 gi|228729737|gb|EEL80717.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
          Length = 1433

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 194/919 (21%), Positives = 340/919 (36%), Gaps = 228/919 (24%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDGMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  EALENTVEIA---RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--EVRL 323
            E +   + +    +  S I  VH P+                +++L    + G   E R 
Sbjct: 782  EDVAKEIVVTNTQKVASLIGDVH-PV----------------KDDLYTPKIEGADDETRD 824

Query: 324  AQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG  RG
Sbjct: 825  MSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRG 883

Query: 380  SGAGSVTAYALTITDIDPL----------------------------------------- 398
            S   S  A  + IT+++PL                                         
Sbjct: 884  SVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPACNVPYVKD 943

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K A 
Sbjct: 944  GHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEKTA- 1002

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
                      Y  V                 +  A+D       + +  +DRL+      
Sbjct: 1003 ----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV---SGC 1029

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEK 565
             G+ R    H  GI++        VP Y D+    P+             T F+   I  
Sbjct: 1030 TGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQFPADSIGAEWRTTHFDFHSIHD 1081

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT------------ 613
              L+K D LG    T+++   D        +D   IP DD E   + +            
Sbjct: 1082 -NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPKSLGVTEEQI 1135

Query: 614  --TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNRKNG 667
                GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN     
Sbjct: 1136 NCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGTCTL 1195

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE ++
Sbjct: 1196 SEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEEWEE 1238

Query: 728  Q-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              K   + G   +   K               Y F K+HAAAY +++ + A+ K H+ + 
Sbjct: 1239 DMKSNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHFALL 1285

Query: 787  FLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN--------------- 822
            F AA  T+  D  +VE + K     R       Q  +   P   +               
Sbjct: 1286 FYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCERG 1345

Query: 823  ----------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                      +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R 
Sbjct: 1346 YSFQKVDLYRSHATEFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR- 1404

Query: 873  DSKKLNRRVLESLVFAGAL 891
               K+++ ++E L   G L
Sbjct: 1405 --SKVSKTIIEYLDSQGCL 1421


>gi|157964617|ref|YP_001499441.1| DNA polymerase III alpha chain [Rickettsia massiliae MTU5]
 gi|157844393|gb|ABV84894.1| DNA polymerase III alpha chain [Rickettsia massiliae MTU5]
          Length = 2794

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 130/276 (47%), Gaps = 28/276 (10%)

Query: 521 LYRHASTHAAGIVIG-DRPLSQLVPMYRDVRSDLPVTQFNM----KWIEKAGLIKFDFLG 575
           L  HA    AG ++  +  L Q     + V S+L +   N     K  +  G IKFD L 
Sbjct: 621 LITHAYQGRAGWMMKKNNSLHQSAIGIKPVNSNLAIKNGNFTDYNKCTDIKGFIKFDLLS 680

Query: 576 LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            K L    +      Q  V    SL   +D +TY L+       +FQ+  S M +  + +
Sbjct: 681 SKELYKFNQVCK--QQTDVTKRDSL---NDAKTYQLIANGDVQNLFQI--SKMGKVCKEL 733

Query: 636 QPDCIEDIIALVSLYRPGP-IDNIVVYNNRKNGKEKIVSIHPLIDPM--LKETQGVIIYQ 692
            P C  D++ L+++ R  P I N  +  N   GK+    +  LIDP+     T+GVI+++
Sbjct: 734 HPTCFNDLVNLLAVNRSIPQIRNTNI--NILAGKQ----LSSLIDPLSVFSSTKGVILFK 787

Query: 693 EQVMQIAQLLSGYSLSEA-DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           EQ+MQ A    G ++      L+    KKI ++   +K+++I  A+   I    A  +F 
Sbjct: 788 EQIMQAANRYFGVNVKNTYQFLKDLKDKKIGKD---EKKQYIKKAN---IFTDQADQLFT 841

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            L K +   F+K+HA + A I Y +A++K HYP  F
Sbjct: 842 ELQKASSSVFSKAHAISCAKIIYNSAYVKAHYPELF 877



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 3/100 (3%)

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
           ++Y++RL  ELN+I +  ++  FLI A+ ++  +  +I      GS   S+ A AL I  
Sbjct: 525 EEYQKRLTEELNIIKQFDYAENFLIAANIVKICQYFDIRYQL-IGSANSSLVAKALNIHT 583

Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
           I+P+   LLFE FL+ DR   PDFD     ++R  +  Y+
Sbjct: 584 INPIEHQLLFEVFLSDDR--QPDFDFYIDSEQRHIICNYL 621


>gi|294500902|ref|YP_003564602.1| DNA polymerase III subunit alpha [Bacillus megaterium QM B1551]
 gi|294350839|gb|ADE71168.1| DNA polymerase III, alpha subunit [Bacillus megaterium QM B1551]
          Length = 1436

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 168/807 (20%), Positives = 298/807 (36%), Gaps = 206/807 (25%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
            S +V+L      P+VAT N  +L+ ED     +L  +      +  +R ++ PD + ++ 
Sbjct: 717  SNIVKLGEKIGKPVVATGNVHYLNPEDKIYRKIL--IGSQGGANPLNRHQL-PDVHFRST 773

Query: 258  SEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
             EM++ FS  D  +A E  V   ++ + ++               DDI K  +++L    
Sbjct: 774  DEMLNCFSFLDGDKAKEIVVHNTQKIADMI---------------DDI-KPIKDDLYTPK 817

Query: 316  VAGL--EVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            + G   E+R    A+A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  
Sbjct: 818  IEGADEEMREMSYAMARSIYGEELPEVVEARLEKELKSIIGHGFAVIYLISHKLVKKSLN 877

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPL------------------------------- 398
            +   VG  RGS   S  A    IT+++PL                               
Sbjct: 878  DGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPKCKKSEFFNDGSVGSGFDLPDKSC 936

Query: 399  ----------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
                         + FE FL      +PD D++F  + +     Y +  +G + V +  T
Sbjct: 937  EDCGVPFIKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGQDNVYRAGT 996

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
             G++  K A           Y  V                 +  A D   R+  L +  V
Sbjct: 997  IGTVAEKTA-----------YGYV-----------------KGYAGD---RDLHLRNAEV 1025

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV-------------RSDLPV 555
            DRL+       G+ R    H  GI++        VP Y D+              S+   
Sbjct: 1026 DRLV---AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQFPADDRNSEWRT 1074

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY------ 609
            T F+   I    L+K D LG    T+++   D        +D   IP DD E        
Sbjct: 1075 THFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGT 1128

Query: 610  --------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
                     ++   GTLGI +  +  +RQ LE  +P    +++ +  L       ++ + 
Sbjct: 1129 ESLGVTEEQIMCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHG---TDVWLG 1185

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N ++  +  I ++  +I     +    +IYQ     +A     + + E+    + +  + 
Sbjct: 1186 NAQELIRNDICNLSEVIG-CRDDIMVYLIYQGLEPSLA-----FKIMESVRKGKGLTPEF 1239

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEM            KNG+      + +    K   Y F K+HAAAY +++ + A+ K 
Sbjct: 1240 EEEM-----------IKNGVP-----DWYIDSCKKIKYMFPKAHAAAYVLMAVRIAYFKV 1283

Query: 782  HYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVNTPCV------ 826
            H+ + + AA  T+  D+ +          I+   ++     +   P   N   V      
Sbjct: 1284 HHALLYYAAYFTVRADDFDIDTMIKGSTAIRAKMEEINAKGLDASPKEKNLLTVLELSLE 1343

Query: 827  -------------------DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
                               +F +    +     AI G+GT  A +I++A     F S ED
Sbjct: 1344 MCERGYSFKKVDLYKSSADEFLIDGTSLVPPFNAIPGLGTNAALNIVKARETGEFLSKED 1403

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCF 894
               R    K+++ +LE L   G L+  
Sbjct: 1404 LQQR---GKVSKTILEYLDNHGCLESL 1427


>gi|291557938|emb|CBL35055.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium siraeum
            V10Sc8a]
          Length = 1605

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 161/772 (20%), Positives = 283/772 (36%), Gaps = 153/772 (19%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++LV    G + L  L+S   L D   +  RI  S L +   EGLI+ +   +G + RA 
Sbjct: 783  IILVKNKVGLKNLYRLISASNL-DYFYKKPRIPKSLLSQY-REGLIIGSACEAGELFRAI 840

Query: 160  FFNSSQVAEKRLLTFKKLF-----GDRLYV--NLQRHRGYD-RYRESQVVQLAYTHELPL 211
                SQ   + + +F         G+ +++  N +     D R     +VQL      P+
Sbjct: 841  LEKESQEKIEEIASFYDYLEIQPIGNNMFLLRNGKVSSEEDLRDLNRAIVQLGDRLGKPV 900

Query: 212  VATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
            VAT +  F   ED    +VL A   +    +Q       P  Y +   EM+  F+ L E 
Sbjct: 901  VATCDVHFKDPEDAVFREVLQAGQGYEDFANQ-------PPLYFRTTDEMLEEFAYLGEE 953

Query: 270  -ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
             A E  +    R + +++V  PI         D   +E +    ++A A     L +   
Sbjct: 954  KAKEVVITNTNRIADMIEVVRPIPTGTYTPHIDGADEELQQLCWDRAHAWYGDDLPETV- 1012

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                      +RL  EL+ I +  F+  ++I    + +++KN   VG  RGS   SV A 
Sbjct: 1013 ---------EKRLKKELDSIIKHGFAVLYMIAQKLVAFSEKNGYLVG-SRGSVGSSVVAI 1062

Query: 389  ALTITDIDPL-----------------------------------------RFSLLFERF 407
               I++++PL                                            + FE F
Sbjct: 1063 MAGISEVNPLPPHYRCPKCRHNEFILDGSYGSGFDLPPKKCPNCDIDMIRDGHDIPFETF 1122

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            L  D    PD D++F  + + +V RY +  +G + V +  T  ++Q K A   V + L+ 
Sbjct: 1123 LGFDGDKSPDIDLNFSGEVQGKVHRYTEELFGKDHVFKAGTISAVQEKTAEGFVRKWLE- 1181

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                                           ++   A+ +   +  ++    G+ R  S 
Sbjct: 1182 -------------------------------KKGMTANSA--EISRLAAGCTGVKRTTSQ 1208

Query: 528  HAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            H  G+V+   D  +     +        SD+  T F+   +    ++K D LG    TL 
Sbjct: 1209 HPGGMVVVPSDYEVYDFTAVQHPADKTESDMITTHFDFHALHDT-ILKLDELGHDVPTLY 1267

Query: 583  QKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKGTLGIFQLESSGM 628
            +   D     G+K+  + +P  D +   L T              + GT GI +  +   
Sbjct: 1268 KHLEDM---TGIKI--ADVPTSDPKVMELFTSTEPLGIKEEDLGVSSGTYGIPEFGTPFT 1322

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
             Q L+  QP    D++ +  L     +          N ++ I      I  ++     +
Sbjct: 1323 LQMLKDAQPKKFSDLLQISGLSHGTDV-------WLGNAQDLISDGTCTISEVIGCRDDI 1375

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++Y    +    L    +    ++ R+   KK+        E       +N + +    +
Sbjct: 1376 MVY----LMHQGLEPKLAFKIMEITRKGNAKKL------FNEDIYKAFEENNVPQWYIES 1425

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
                  K   Y F K+HAAAY   + +  W K +YP EF +A +T   +N++
Sbjct: 1426 -----CKKIKYMFPKAHAAAYVTGAVKLCWFKVYYPSEFYSAVLTKHTENID 1472


>gi|186701836|ref|ZP_02971504.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 6 str. ATCC 27818]
 gi|186701125|gb|EDU19407.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 6 str. ATCC 27818]
          Length = 1442

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 146/659 (22%), Positives = 242/659 (36%), Gaps = 174/659 (26%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   S+ A  L ITD++P
Sbjct: 843  EQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGSSLVATFLNITDVNP 901

Query: 398  LR--------------------FSLL-------------------FERFLNPDRMSMPDF 418
            L                     F L+                   FE FL  D   +PD 
Sbjct: 902  LTPHYLCPNCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPFETFLGFDGDKVPDI 961

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F    +     ++++ +G     +  T G++   +A   V +  +            
Sbjct: 962  DLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAQTSAENTVKKYFE------------ 1009

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                             +RF E ++   S   L    QK     R    H  GI+I  + 
Sbjct: 1010 -----------------NRFNENKIIRDSTVSLY--VQKCIDSKRTTGQHPGGIIIVPKE 1050

Query: 539  LS--QLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF--LAQ 591
             S     P      D+      T F  +++  + L+KFD LG    T+L+   D+  + +
Sbjct: 1051 YSIWDFSPYNFPANDINETWKTTHFAFEYLHDS-LLKFDILGHDNPTILKLLKDYTGIDE 1109

Query: 592  RGVKV--DLSLIPFDDHETYH------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            R V +   L +  F D    +      L  T G + I +  +  +R  L   +P    D+
Sbjct: 1110 RDVPMYDPLVMKSFSDISALNIKPSDVLNETTGAISIPEFGTRFVRGMLVDTKPKSFADL 1169

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            I +  L     +             + ++    L+  ++     ++ Y   + Q  +  +
Sbjct: 1170 IRISGLSHGESV--------WLGNAQSLIKSGKLLKDVIACRDDIMTYL--IRQNVEPKT 1219

Query: 704  GYSLSEADVLRRAMGKKIKEEMD------KQKERFISGASKNGISKTIAVNIFELLAKFA 757
             + + E DV +   GKKIK E        K  E +I  A+K                   
Sbjct: 1220 AFLIME-DVRK---GKKIKPEHQIILKELKVPEWYIESANK------------------I 1257

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQD 808
             Y F K+HA AY + +++ AW K +YP+E+ AA  ++  DN          E I+K   D
Sbjct: 1258 KYMFPKAHATAYVMHAWKFAWYKIYYPLEYYAAFFSVRADNFDLFVINQGKEFIEKTYND 1317

Query: 809  --------------------------------ARQF---NIQIMPPSVNTPCVDFKVGDN 833
                                            AR F   NI I      +  +D +  +N
Sbjct: 1318 IEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQ--NN 1375

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I     AI+G+G T A  I+EA   K F ++ED  +R    K++R  L++L   G LD
Sbjct: 1376 AIIPPFIAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISRTDLKNLRELGVLD 1431


>gi|303238571|ref|ZP_07325105.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
 gi|302593969|gb|EFL63683.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
          Length = 1446

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 143/633 (22%), Positives = 235/633 (37%), Gaps = 156/633 (24%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++L     G + L +LVS  +L D   +  RI  S  ++  +EGLI+ +  S G + +A 
Sbjct: 619  IILAKDYVGLKNLYKLVSYSHL-DYFYKKPRILKSVYKKY-SEGLILGSACSEGELFQAI 676

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY--RESQVVQLAYTHEL-------- 209
                S   +  + T  K   D  Y+ +Q   G + Y  R+ +V    Y  E+        
Sbjct: 677  LHGKS---DDEIETIAK---DYDYLEIQP-LGNNDYLVRKEEVPDKEYIKEINRKIVALG 729

Query: 210  -----PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
                 P+VAT +  FL  ED E +  ++        + K  P      YLK   EM+  F
Sbjct: 730  EQLNKPVVATGDVHFLDPED-EIYRRILEAGQGYDDADKQAPL-----YLKTTDEMLEEF 783

Query: 265  SDLPE------ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKA 315
            S L E       + NT  IA  C  I  +     P  IE   +   DI   + +EL    
Sbjct: 784  SYLGEEKAYEVVVTNTNLIADMCEQISPISPEKCPPHIEGCEQTIKDISFGKAHELYGDP 843

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
            +  +                  +QRLD EL+ I +  FS  ++I    +  + ++   VG
Sbjct: 844  LPEI-----------------VQQRLDRELDSIIKNGFSVMYIIAQKLVWKSNEDGYLVG 886

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   SV AY   IT+++ L         ++S                         
Sbjct: 887  -SRGSVGSSVVAYMTGITEVNALPPHYRCPSCKYSDFTDYGFNNGFDLPDKPCPVCGEML 945

Query: 402  ------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL  D    PD D++F  + + +  +Y +  +G     +  T G++  K
Sbjct: 946  AKDGIDIPFETFLGFDGDKEPDIDLNFSGEYQAKAHKYTEVIFGKGTTFKAGTVGTIADK 1005

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V +  +                                RE  +    ++R   I+
Sbjct: 1006 TAFGYVKKYYEE-------------------------------REIHINKAEIER---IA 1031

Query: 516  QKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIK 570
            +   G+ R    H  GI++    R + +  P+     D  SD+  T F+   I++  L+K
Sbjct: 1032 KGCTGIKRTTGQHPGGIIVVPKGREIFEFCPVQHPADDPDSDIITTHFDYHSIDQ-NLLK 1090

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------G 616
             D LG    T+++     + Q    VD   IP DD +T  L ++               G
Sbjct: 1091 LDILGHDDPTMIR-----MLQDITGVDPKTIPMDDKDTMSLFSSTEALGVTPQQINSKVG 1145

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            T G+ +  +  +R  L    P    D+I +  L
Sbjct: 1146 TFGVPEFGTKFVRGMLLDTMPKQFADLICISGL 1178



 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 24/36 (66%)

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            Y F K+HA AY +++++ AW K H P+ + AA  ++
Sbjct: 1267 YMFPKAHACAYIMMAFRIAWFKVHIPLAYYAAYFSI 1302


>gi|167465812|ref|ZP_02330901.1| DNA polymerase III PolC [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 694

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 144/670 (21%), Positives = 254/670 (37%), Gaps = 161/670 (24%)

Query: 210 PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
           P++AT N  +L   D    D+ +    +     KD  +  PD + +  S+M+  F  L  
Sbjct: 24  PVIATGNVHYLHPRDKVCRDITIN-GITGFSPLKDMKK--PDAHFRTTSDMLEQFQFL-- 78

Query: 270 ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
             E   E+  + +  L      L  F +K    I +  + E+R K              A
Sbjct: 79  GKEKAYEVVVKNTNELADRFEELELFPDKLFTPIIEGADEEIRTKCYN----------TA 128

Query: 330 KGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
           K  + +D  Q    RL+ EL  I +  FS  +LI    ++ + ++   VG  RGS   SV
Sbjct: 129 KQIYGEDLPQVIIDRLEKELVPIIKYGFSANYLISERLVKKSNEDGYLVG-SRGSVGSSV 187

Query: 386 TAYALTITDIDPL----------------------RFSL-------------------LF 404
            A  L I++++PL                       F L                    F
Sbjct: 188 VAMMLGISEVNPLPPHYICSSCKHSEWFMDGSVPSGFDLPDKECPHCGGKLKGEGQDIPF 247

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           E FL      +PD D++F  + +     Y +  +G + V +  T G++  K A   V + 
Sbjct: 248 ETFLGFKGDKVPDIDLNFSGEYQPVAHNYTKVLFGEKNVFRAGTIGTVAEKTAFGYVKK- 306

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
               Y +                SL       ++R A ++         ++    G+ R 
Sbjct: 307 ----YEE----------------SL-----GKKWRNAEIS--------RLASGCTGVKRS 333

Query: 525 ASTHAAGIVIGDR--PLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
              H  GIV+      +  + P+     D +S+   T F+    + A L+K D LG    
Sbjct: 334 TGQHPGGIVVVPDYIEVDDITPVQFPADDTKSEWKTTHFDYHAFD-ANLLKLDILGHDDP 392

Query: 580 TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLES 625
           T+++   D        VD   IP +D +   +  +               GT G+ ++ +
Sbjct: 393 TMMRMLQDLTG-----VDPLKIPMNDPKVMSIFNSTDALGVTPEQIRSPVGTFGVPEMGT 447

Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI----DPM 681
             +RQ L+  QP    D++ +  L        + + N ++  ++ I SI  +I    D M
Sbjct: 448 KFVRQMLQETQPSSFADLLQISGLSHG---TGVWLGNAQELIRKGICSIKTVIGCRDDIM 504

Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG--KKIKEEMDKQK--ERFISGAS 737
           L      +IY+      A + +G +    + +R+  G   + KEEM K    + +I    
Sbjct: 505 L-----YLIYK------AGMDAGLAFKITESVRKGKGLTDEWKEEMKKHNVPDWYIESCE 553

Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
           +                   +Y F K+HAAAY + + +TA+ K ++P+ F A   ++  +
Sbjct: 554 R------------------IEYMFPKAHAAAYVISAVRTAYYKLYHPIAFYATYFSVRAE 595

Query: 798 NVEKIKKFCQ 807
           + E +   CQ
Sbjct: 596 DFE-LDLLCQ 604


>gi|51892650|ref|YP_075341.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
            14863]
 gi|51856339|dbj|BAD40497.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
            14863]
          Length = 1475

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 168/759 (22%), Positives = 279/759 (36%), Gaps = 197/759 (25%)

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIE 297
            DRP      YL+   EM+  F+ L E       +EN   IA +   +  V   + P  +E
Sbjct: 792  DRP-----FYLRTTQEMLDEFAYLGEQAAYEVVVENPNAIAAQIEKVKVVPDKLHPPVLE 846

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               ++ ++    ++  K V G  V             +    RL+ ELN I    F+  +
Sbjct: 847  GSVEETRRLSWEKV--KRVYGDPV------------PEKIAHRLEKELNAIIGNGFAVSY 892

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
             I    ++ + +    VG  RGS   S  A+A+ IT+++ L                   
Sbjct: 893  YISHLLVKKSMELGYLVG-SRGSVGSSFVAWAMDITEVNALPPHYICPQCKYLEWHDDGK 951

Query: 400  ----FSLL-------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                F L                    FE FL      +PD D++F  + ++ + +Y + 
Sbjct: 952  TGSGFDLPRKDCPRCGTPLDRDGQDIPFETFLGFKGDKVPDIDLNFSGEVQNRIQKYSEE 1011

Query: 437  KYGHER-VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              G E+ V +  T G++  K A   V                            +A  ++
Sbjct: 1012 LLGGEKYVFKAGTVGTIAEKTAFGMV----------------------------RAWLEE 1043

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG--DRPLSQLVPMY---RDVR 550
            SR    R A      +  ++Q L G+ R    H  G+V+      + ++ P+     D  
Sbjct: 1044 SRITGVREA-----HIGYLAQGLAGVKRTTGQHPGGMVVCPVGMEIEEVTPVQYPADDRS 1098

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IPFDDHET 608
            S +  T F+    E+A L+K D LG    T+L+   D   ++    D  +  +P DD + 
Sbjct: 1099 SGVKTTHFDYHSFEQA-LMKLDILGHDDPTMLKMLQDLYREKKGDPDFDVRKVPVDDPQV 1157

Query: 609  YHLLTTKGT-------------LGIFQLESSG---MRQALEGMQPDCIEDIIALVSLYRP 652
              L +  G              LG   L   G   +RQ L    P    D++ +  L   
Sbjct: 1158 LALFSPGGNRVLGIEDGKLQFDLGTIVLPEMGTRFVRQMLMETSPRNFSDLVRISGLSH- 1216

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                   V+ N  N +E +    P         Q VI  ++ +M   QL+  Y   E   
Sbjct: 1217 ----GTDVWTN--NAQELVKKGIPF--------QDVIGCRDDIM--VQLI--YWGVEP-- 1256

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL---AKFADYGFNKSHAAAY 769
               A   KI E + K K     G +        A N+ +      K   Y F K+HAAAY
Sbjct: 1257 ---ATAFKIMESVRKGK-----GLTPEMEETMRACNVPDWYIWSCKQIKYMFPKAHAAAY 1308

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQDARQFNIQIMPPS 820
             +   + AW K H P+ F AA +++   +V         E ++++ Q+         P  
Sbjct: 1309 VLSCLRIAWFKVHEPLLFYAAYLSVRAGSVDANLLVAGPEAVRRYVQEIEAKGKDATPKE 1368

Query: 821  VNTPCVDFKV---------------------------GDNRIYYSLAAIKGVGTTTARHI 853
             ++   ++++                           G+N +     A+ G+G + A+ I
Sbjct: 1369 KDS-LTEYELVEEAFLRGIRFNRVDLYRSEATRYLIDGENTLLCPFNALPGLGDSAAQAI 1427

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +EA A  PF S ED  +R    +LN+ V+E L   G L+
Sbjct: 1428 VEARAQGPFHSKEDLKNRA---RLNKAVMELLEGHGCLE 1463


>gi|282850246|ref|ZP_06259625.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            parvula ATCC 17745]
 gi|282579739|gb|EFB85143.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            parvula ATCC 17745]
          Length = 1263

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 189/994 (19%), Positives = 374/994 (37%), Gaps = 188/994 (18%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S V L +H+  S  +  +S+ ++   I     PA+AITD   + +  E        G++ 
Sbjct: 335  SRVELHLHTKMSDKDALVSVKDLFKTIKKWGHPAVAITDHGVVQAFPEAQALGKELGVKV 394

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPS-------IVLLVSTAEGYQRLIELVSRMYLL 122
            I G +  + ++D   + ++                 I+LL     G + L +++S  +L 
Sbjct: 395  IYGVEGYL-IEDETVIKDEEPVLDKKKKKEKDKRYHIILLAKNMVGLRNLYKMISISHL- 452

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +  K   R+  S ++E   EG+I+ +   +G + ++    +++   + LL     +    
Sbjct: 453  EHYKVRPRLPRSVIEE-HREGIIIGSACEAGELMQSIVRGATK---EELLEVASFYD--- 505

Query: 183  YVNLQRH--------RGYDRYRES------QVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
            Y+ +Q H        +G     ++       V++L      P+ AT +  +L+ E+    
Sbjct: 506  YLEIQPHTNNTFLVRKGLMPDEQALIDMNKTVIELGEALNKPVCATCDVHYLTPEEKIYR 565

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQ 286
            ++++         ++      PD +L+   EM++ F  L E  A E  V   R  +  ++
Sbjct: 566  EIMLTACGYPDADEQ------PDLHLRTTDEMLASFPYLSEEKAYEVVVTNTRAINDSIE 619

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               P+          D     + E  ++A   +  R A+ AI      +  ++RLD+EL+
Sbjct: 620  DIKPV---------PDGTYSPKIEGADEAFTEMCYRNAK-AIYGDPLPRVVQERLDYELD 669

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL-------- 398
             I    +   + I    ++ +  +   VG  RGS   S  A    IT+++PL        
Sbjct: 670  CIISNGYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPHYVCPN 728

Query: 399  -RFSLLFER--------------------------------FLNPDRMSMPDFDIDFCQD 425
             ++S  FE+                                FL  +   +PD D++F  D
Sbjct: 729  CKYSEFFEKGEYAGGFDLPRKDCPECGHALQTNGHDIPFAIFLGFEGDKVPDIDLNFSGD 788

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             + +  +Y +  +G + V +  T G++  K A   V +     Y+++             
Sbjct: 789  YQAKAHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKK-----YAEI------------- 830

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLV 543
                + I   + F E             +++    +      H  GI++  R +      
Sbjct: 831  ----RDIQARNGFFE------------HLAKGFTNVKNTTGQHPGGIMVCPRDMDVHHFT 874

Query: 544  PMYRDV---RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+        S +  T F+   IE   + K D LG    T+++   D        +D   
Sbjct: 875  PIQHPANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIRMLEDLTG-----IDAKT 928

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII-ALVSLYRPGPIDNIV 659
            IPFDD +T  L ++   +G+   +  G + A   + P+C    +  ++   RP    ++V
Sbjct: 929  IPFDDPKTLSLFSSTEGIGLTPEQLQGDQVASLAV-PECGTKFVRGMLEDSRPQTFSDLV 987

Query: 660  VYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRR 715
              +   +G    + +   LI     +    I  ++ VM       +   +S    + +R+
Sbjct: 988  RISGFSHGTNVWLDNAQDLIKNGTCKLNEAISTRDDVMNFLIHRGMDRKHSFFVMENVRK 1047

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
              G + + +  +    F +   +N I +      F    K   Y F ++HA AY +++++
Sbjct: 1048 GKGIEKRNKQGQATTEFEAEMRENNIPE-----WFIESCKKISYLFPRAHAVAYVMMAFR 1102

Query: 776  TAWMKTHYPVEFLAASMTL----------------EMDNVEKIKKFCQDA---------- 809
             AW K ++P+ F AA  ++                ++    +IK   + A          
Sbjct: 1103 IAWFKVYHPLAFYAAYFSIRAKAFDLRIMTGDLKTQLTEFNRIKALDRAASPKDKDLMSA 1162

Query: 810  ------------RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                        R  N+ I     ++    F + D  +     AI  +G T A  I+E  
Sbjct: 1163 LEVSMEMYQRGYRFINVDIQ----HSEARRFSIKDGALLPPFLAIDSLGETVADAIVEER 1218

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             ++PF SL+D   R         +++ L   G L
Sbjct: 1219 NERPFTSLKDLQRRCKVSNTIIDLMKDLKCCGEL 1252


>gi|291545334|emb|CBL18442.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp.
            SR1/5]
          Length = 1129

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 176/871 (20%), Positives = 318/871 (36%), Gaps = 193/871 (22%)

Query: 78   DMQDNLKMTNQGKTP------FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            D+ D  +M  QG          PT  +IV       G   L +LVS+ +L    ++  R+
Sbjct: 268  DIFDVDEMNRQGAVSPDTIRKLPTYHAIVF-ARNETGRINLYKLVSQSHLKYYHRRP-RV 325

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVN 185
              S L++   EGL++ +   +G + +A   N+      RL+ F      + L  +   + 
Sbjct: 326  PKSVLEKY-REGLLVGSACEAGELYQALLRNAPDQEIARLVNFYDYLEIQPLGNNAFMLA 384

Query: 186  LQRHRGYDRYRE-----SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++H   +   +      ++V+L    + P+VAT +  F+  +D     ++MA       
Sbjct: 385  DEKHDMINSEEDLKEINRKIVKLGEQFKKPVVATCDVHFMDPQDEVYRRIIMA---GNGF 441

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPR 294
            S  D        YL+   EM+  FS L         + NT +IA     I  +H    P 
Sbjct: 442  SDADNQAPL---YLRTTEEMLEEFSYLGSEKAEEVVITNTNKIADMIEKISPIHPDKFPP 498

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
             IE          E +L+N                     +    RLD ELN I    ++
Sbjct: 499  VIENS--------EQDLKNICFTKAHEMYGDPL------PKIVEDRLDRELNSIISNGYA 544

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------- 398
              ++I    +  + ++   VG  RGS   S+ A    IT+++PL                
Sbjct: 545  VMYIIAQKLVWKSNEDGYLVG-SRGSVGSSLAATMSGITEVNPLPPHYLCPNPDCKYSDF 603

Query: 399  -------------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                            F + FE FL       PD D++F  + +
Sbjct: 604  DSPEVKKYAGMAGCDMPDKICPKCGARMNKEGFDIPFETFLGFKGDKEPDIDLNFSGEYQ 663

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                RY +  +G  +  +  T G+L  K A   V    +    Q  R C+          
Sbjct: 664  ANAHRYTEVIFGKGQTFKAGTIGTLAEKTAFGYVKNYYE-ERGQHKRYCE---------- 712

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY- 546
                                ++R++   +   G+ R    H  GI++   P+ + +  + 
Sbjct: 713  --------------------INRIV---KGCTGVRRTTGQHPGGIIV--LPMGEEIEKFT 747

Query: 547  ------RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
                   DV SD+  T F+   I+   L+K D LG    T+++   D        +    
Sbjct: 748  PVQHPANDVNSDIITTHFDYHSID-GNLLKLDILGHDDPTMIRMLEDLTG-----ISART 801

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P D  +   L      LGI   +  G R    G+     +  + ++   +P    ++V 
Sbjct: 802  VPLDQRDVMSLFAGTQALGISPEDIGGCRLGCLGIPEFGTDFAMQMLIDTKPKYFSDLVR 861

Query: 661  YNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRA 716
                 +G +  + +   LI          I  ++ +M       + SG + +  + +R+ 
Sbjct: 862  IAGLSHGTDVWLGNAQVLIQNGTATISTAICTRDDIMIYLIGKGVESGLAFTIMESVRK- 920

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             GK ++EE       +I    ++ +      + +    K   Y F K+HAAAY +++Y+ 
Sbjct: 921  -GKGLREE-------WIQTMKEHDVP-----DWYIWSCKLIKYMFPKAHAAAYVMMAYRI 967

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            AW K  +P+ + AA  ++              A  F+ ++M       C    +G  R+ 
Sbjct: 968  AWYKVFHPLAYYAAFFSIR-------------ATSFSYELM-------C----MGKERLE 1003

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLED 867
            Y +A I+  G        +A++ K  D+L+D
Sbjct: 1004 YYMAEIRKKG--------DAASKKEQDTLKD 1026


>gi|229552421|ref|ZP_04441146.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|229314158|gb|EEN80131.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
          Length = 1437

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 185/909 (20%), Positives = 342/909 (37%), Gaps = 210/909 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++   T  G + L +LVS +  +    +  R+  S LQ++  EGL++ +  SSG +  A 
Sbjct: 608  IVFAKTQAGLKNLFKLVS-LSNVKYFYRVPRVPRSQLQKL-REGLLVGSACSSGEVFTAM 665

Query: 160  FFNSSQVAEKRLLTFKKL-------FGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                   A  +   +  L       +   L  +L +   + +    ++V++    E P+V
Sbjct: 666  MQKGEAEARAKAAFYDYLEIQPPAVYQPLLEADLIKGESHLKDILQKIVKIGDDLEKPVV 725

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE 272
             T +  +L + D     +L+   HS   +        PD + ++  EM+  FS L     
Sbjct: 726  VTGDVHYLDQHDAIYRKILI---HSQGGANPLNRHSLPDVHFRSTREMLDDFSWLG---- 778

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
                 A +   ++  ++ ++   I+ +   ++    ++L    V G+E +L    +A  Y
Sbjct: 779  -----AEKAQKLVVTNSNLIADLIDDDITPVK----DKLYTPEVPGVEEKLKHDVMATAY 829

Query: 333  H------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                    +   QRLD EL  I    FS  + I    +  + K+   VG  RGS   S+ 
Sbjct: 830  ELYGNPLPEIVAQRLDKELKSIIGNGFSVIYNIAQRLVLKSNKDGYLVG-SRGSVGSSLA 888

Query: 387  AYALTITDIDPL---------RFS--------------------------------LLFE 405
            A    IT+++PL         ++S                                + FE
Sbjct: 889  ATMAEITEVNPLPPHYRCPKCQYSEFFTHGEVGSGFDLPDKTCPKCGTELHKDGHDIPFE 948

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL------- 458
             FL      +PD D++F  D +     Y++  +G +   +  T G++  K A        
Sbjct: 949  TFLGFHGDKVPDIDLNFSGDYQPVAHNYIKVMFGEDHSFRAGTIGTVADKTAYGYVKAYE 1008

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
            RD G+  Q+  +++DRL                                       +Q  
Sbjct: 1009 RDTGQ--QLRGAEIDRL---------------------------------------AQGD 1027

Query: 519  EGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             G+ R    H AGI+I   D  +    P+     D  +    T F+   I    ++K D 
Sbjct: 1028 TGVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTTHFDFHSIHD-NILKMDV 1086

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLG 619
            LG    T+++   D        V+   IP DD     L +                GTLG
Sbjct: 1087 LGHDDPTMIRMLQDLSG-----VEPKSIPTDDPGVMALFSGTESLGVTPEQINSKMGTLG 1141

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            I +  +  +R  LE  +P    +++ +  L       ++ + N  +  K+ IV+      
Sbjct: 1142 IPEFGTRFVRGMLEETKPTTFSELLQISGLSHG---TDVWLGNAEELIKQGIVT------ 1192

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
              LKE   VI  ++ +M     L  + + +      +M   I E +  +K R I    + 
Sbjct: 1193 --LKE---VIGCRDNIMMD---LIHWGMDD------SMAFNIMEHV--RKGRGIPDDWQK 1236

Query: 740  GISKTIAVNIFELLAKFA-DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             + +   V  + + +     Y F K+HA AY +++ + AW K HYP+ +  A  ++  ++
Sbjct: 1237 AMRENENVPDWYIDSCLKIKYMFPKAHATAYILMALRIAWFKVHYPLVYYTAYFSVRAED 1296

Query: 799  ----------------VEKIKKFCQDARQFNIQIMPP-SVNTPCVD--FKV--------- 830
                            +++I     DA     Q++    +   C++  FK+         
Sbjct: 1297 FDLAAMSHGKEAVKAAMKEITDKGMDASAKEKQLLTVLEIANECLERGFKIKMIDVTKSD 1356

Query: 831  -------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                    D+ I     A+ G+G   A+ I+ A  +KPF S ED  +R    K+++ +++
Sbjct: 1357 SHDFLIQDDHTILAPFRAVPGLGDNVAKQIVAAREEKPFLSKEDLANR---GKVSKTLID 1413

Query: 884  SLVFAGALD 892
             +     LD
Sbjct: 1414 YMTTNHVLD 1422


>gi|313894543|ref|ZP_07828107.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            sp. oral taxon 158 str. F0412]
 gi|313440939|gb|EFR59367.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            sp. oral taxon 158 str. F0412]
          Length = 1261

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 179/908 (19%), Positives = 348/908 (38%), Gaps = 179/908 (19%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S V L +H+  S  +  +S+ ++   I     PA+AITD   + +  E        G++ 
Sbjct: 333  SRVELHLHTKMSDKDALVSVKDLFKTIKKWGHPAVAITDHGVVQAFPEAQALGKELGVKV 392

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPS-----------IVLLVSTAEGYQRLIELVSR 118
            I G +  + ++D +   ++     P V             I+LL     G + L +++S 
Sbjct: 393  IYGVEGYL-IEDEIVARDEE----PVVDKKKKKEKDKRYHIILLAKNMVGLRNLYKMISI 447

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             +L +  K   R+  S ++E   EG+I+ +   +G + ++    +++   + LL     +
Sbjct: 448  SHL-EHYKVRPRLPRSVIEE-HREGIIIGSACEAGELMQSIVRGATK---EELLEVASFY 502

Query: 179  GDRLYVNLQRH--------RGYDRYRES------QVVQLAYTHELPLVATNNSLFLSEED 224
                Y+ +Q H        +G     ++       V++L      P+ AT +  +L+ E+
Sbjct: 503  D---YLEVQPHTNNMFLVRKGLMPDEQALIDMNKTVIELGEALNKPVCATCDVHYLTPEE 559

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
                ++++         ++      PD +L+   EM++ F  L E  E   EI    +  
Sbjct: 560  KIYREIMLTACGYPDADEQ------PDLHLRTTDEMLASFPYLSE--EKAYEIVVTNT-- 609

Query: 285  LQVHAPILPRFIEKECDDIQKEEEN------ELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                     R I    +DI+   +       E  ++A   +  R A+ AI      +  +
Sbjct: 610  ---------RAINDSIEDIKPVPDGTYSPKIEGADEAFTEMCYRNAK-AIYGDPLPRVVQ 659

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RLD+EL+ I    +   + I    ++ +  +   VG  RGS   S  A    IT+++PL
Sbjct: 660  ERLDYELDCIISNGYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPL 718

Query: 399  ---------RFSLLFER--------------------------------FLNPDRMSMPD 417
                     + S  FE+                                FL  +   +PD
Sbjct: 719  PPHYVCPNCKHSEFFEKGEYAGGFDLPRKDCPECGHALQTNGHDIPFAIFLGFEGDKVPD 778

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  D + +  +Y +  +G + V +  T G++  K A   V +     Y++V     
Sbjct: 779  IDLNFSGDYQAKAHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKK-----YAEV----- 828

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                        + I   S F E             +++    +      H  GI++  R
Sbjct: 829  ------------RDIQARSGFFE------------HLAKGFTNVKNTTGQHPGGIMVCPR 864

Query: 538  PLS--QLVPMYRDV---RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
             +      P+        S +  T F+   IE   + K D LG    T+++   D     
Sbjct: 865  DMDVHHFTPIQHPANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIRMLEDLTG-- 921

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII-ALVSLYR 651
               +D   IPFDD  T  L ++   +G+   +  G + A   + P+C    +  ++   R
Sbjct: 922  ---IDAKTIPFDDPRTLSLFSSTEGIGLTPEQLQGDQVASLAV-PECGTKFVRGMLEDSR 977

Query: 652  PGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSL 707
            P    ++V  +   +G    + +   LI     +    I  ++ VM       +   +S 
Sbjct: 978  PQTFSDLVRISGFSHGTNVWLDNAQDLIKNGTCKLNEAISTRDDVMNFLIHRGMDRKHSF 1037

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
               + +R+  G + + +  +    F +   +N I +      F    K   Y F ++HA 
Sbjct: 1038 FVMENVRKGKGIEKRNKQGQATTEFEAEMRENNIPE-----WFIESCKKISYLFPRAHAV 1092

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AY +++++ AW K ++P+ F AA  ++              A+ F+++IM   + T   +
Sbjct: 1093 AYVMMAFRIAWFKVYHPLAFYAAYFSIR-------------AKAFDLRIMTGDLKTQMTE 1139

Query: 828  FKVGDNRI 835
            F    NRI
Sbjct: 1140 F----NRI 1143


>gi|171920237|ref|ZP_02690314.2| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 1 str. ATCC 27813]
 gi|171902634|gb|EDT48923.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 1 str. ATCC 27813]
          Length = 1442

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 146/659 (22%), Positives = 242/659 (36%), Gaps = 174/659 (26%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   S+ A  L ITD++P
Sbjct: 843  EQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGSSLVATFLNITDVNP 901

Query: 398  LR--------------------FSLL-------------------FERFLNPDRMSMPDF 418
            L                     F L+                   FE FL  D   +PD 
Sbjct: 902  LTPHYLCPNCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPFETFLGFDGDKVPDI 961

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F    +     ++++ +G     +  T G++   +A   V +  +            
Sbjct: 962  DLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAQTSAENTVKKYFE------------ 1009

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                             +RF E ++   S   L    QK     R    H  GI+I  + 
Sbjct: 1010 -----------------NRFNENKIIRDSTVSLY--VQKCIDSKRTTGQHPGGIIIVPKE 1050

Query: 539  LS--QLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF--LAQ 591
             S     P      D+      T F  +++  + L+KFD LG    T+L+   D+  + +
Sbjct: 1051 YSIWDFSPYNFPANDINETWKTTHFAFEYLHDS-LLKFDILGHDNPTILKLLKDYTGIDE 1109

Query: 592  RGVKV--DLSLIPFDDHETYH------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            R V +   L +  F D    +      L  T G + I +  +  +R  L   +P    D+
Sbjct: 1110 RDVPMYDPLVMKSFSDISALNIKPSDVLNETTGAISIPEFGTRFVRGMLVDTKPKSFADL 1169

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            I +  L     +             + ++    L+  ++     ++ Y   + Q  +  +
Sbjct: 1170 IRISGLSHGESV--------WLGNAQSLIKSGKLLKDVIACRDDIMTYL--IRQNVEPKT 1219

Query: 704  GYSLSEADVLRRAMGKKIKEEMD------KQKERFISGASKNGISKTIAVNIFELLAKFA 757
             + + E DV +   GKKIK E        K  E +I  A+K                   
Sbjct: 1220 AFLIME-DVRK---GKKIKPEHQIILKELKVPEWYIESANK------------------I 1257

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQD 808
             Y F K+HA AY + +++ AW K +YP+E+ AA  ++  DN          E I+K   D
Sbjct: 1258 KYMFPKAHATAYVMHAWKFAWYKIYYPLEYYAAFFSVRADNFDLFVINQGKEFIEKTYND 1317

Query: 809  --------------------------------ARQF---NIQIMPPSVNTPCVDFKVGDN 833
                                            AR F   NI I      +  +D +  +N
Sbjct: 1318 IEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQ--NN 1375

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I     AI+G+G T A  I+EA   K F ++ED  +R    K++R  L++L   G LD
Sbjct: 1376 AIIPPFIAIQGLGETVANSIIEARNQKVFSTIEDLKNRT---KISRTDLKNLRELGVLD 1431


>gi|257869605|ref|ZP_05649258.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
 gi|257803769|gb|EEV32591.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
          Length = 1449

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 154/799 (19%), Positives = 285/799 (35%), Gaps = 216/799 (27%)

Query: 211  LVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL-P 268
            +VAT N  +L+EED     +L+ ++  +  +++   P V    + +   EM++ F  L P
Sbjct: 734  VVATGNVHYLNEEDAIYRKILINSMGGANPLNRHSLPAV----HFRTTDEMLTAFQFLGP 789

Query: 269  EALENTV-----EIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            +  +  V     +IA  C  ++ V    + P +P   E+E  D+      EL    +  +
Sbjct: 790  DTAKEIVVTNPNKIADMCEKVIPVKDDLYTPKIPGS-EQEITDLSYNRAKELYGDPLPEI 848

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                               +RL  EL+ I    FS  +LI    +  + ++   VG  RG
Sbjct: 849  -----------------VEKRLKKELDSIIGNGFSVIYLISQKLVHKSNEDGYLVG-SRG 890

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S  A    IT+++PL                                         
Sbjct: 891  SVGSSFVATMTGITEVNPLAPHYYCPDCQYSEFYEDGSYGSGYDMPEKKCPKCGTRLNKD 950

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA- 457
               + FE FL      +PD D++F  + + E   Y +  +G + V +  T G++  K A 
Sbjct: 951  GHDIPFETFLGFHGDKVPDIDLNFSGEYQPEAHNYTKVLFGEDYVYRAGTIGTVADKTAF 1010

Query: 458  --LRDVGRALQMPY--SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
              ++   R   + Y  ++VDRL K                                    
Sbjct: 1011 GFVKGFERDHNLHYRAAEVDRLAK------------------------------------ 1034

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNM 560
                  G+ R    H  GI++        +P Y DV    P+             T F+ 
Sbjct: 1035 ---GATGVKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDMNSEWKTTHFDF 1083

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-------- 612
              I    ++K D LG    T+++   D        +D   IP DD E   +         
Sbjct: 1084 HSIHD-NILKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMRIFGGTDVLGV 1137

Query: 613  ------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
                  +  GTLGI +  +  +R  LE   P    +++ +  L     +          N
Sbjct: 1138 TEEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGN 1190

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +E I      +  ++     +++Y    +  A L  G +    + +R+    KI +++ 
Sbjct: 1191 AEELIRRGDANLAEVIGCRDDIMVY----LIHAGLDDGMAFKIMETVRKGQWNKIPDDL- 1245

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              ++ ++    +N + +    +  ++      Y F K+HAAAY +++ + A+ K ++P+ 
Sbjct: 1246 --RDTYLQAMRENNVPEWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPIL 1298

Query: 787  FLAASMTLEMDNV---------EKIKKFCQDARQFNIQIMPPSVNTPCV----------- 826
            +  A  ++  D+          E +K+  Q+     +       N   V           
Sbjct: 1299 YYCAYFSVRADDFDLIAMSKGKEAVKERMQEINDKGMDASTKEKNLLTVLELANEMLERG 1358

Query: 827  --------------DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                          +F +  N++     A+  +G   A+ I EA  D PF S ED  +R 
Sbjct: 1359 YEFGMIDLYKSDAENFVIDGNKLIAPFRAVPSLGLNVAKQICEARKDGPFLSKEDLANR- 1417

Query: 873  DSKKLNRRVLESLVFAGAL 891
               K+++ ++E +   G L
Sbjct: 1418 --GKVSKTLIEYMTDNGVL 1434


>gi|167759386|ref|ZP_02431513.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704]
 gi|167662943|gb|EDS07073.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704]
          Length = 1499

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 183/916 (19%), Positives = 331/916 (36%), Gaps = 196/916 (21%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
             PT   I+L ++   G   L  L+S+ +L D   +  RI  S L +   EGL++ +   +
Sbjct: 649  LPTYHVIILALNEV-GRVNLYTLISKSHL-DYYARRPRIPKSELSKY-REGLMVGSACEA 705

Query: 153  GPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYV------NLQRHRGYDRYRESQV 200
            G + +A     S+    R++ F      + L  +R  +      N+Q      +  + ++
Sbjct: 706  GELYQAILNEKSEERIARIVNFYDYLEIQPLGNNRFMIASDRIENVQSEEDLKKINK-KI 764

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
            V L      P+V T +  F+  ED     ++MA          D     P  YL+   EM
Sbjct: 765  VDLGDRFNKPVVGTCDVHFMDPEDEVYRRIIMAGK-----GFGDADEQAP-LYLRTTDEM 818

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR----NKAV 316
            +  F  L       + I   C  I  +   I P   +K C  +  + +  LR    NKA 
Sbjct: 819  LEEFEYLGSTKAKEIVIDNPCK-IADMAEKITPVRPDK-CPPVIPDSDKMLREICYNKAH 876

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            +     L               +RL+ ELN I    F+  ++I    +  + ++   VG 
Sbjct: 877  SMYGEELPPIVT----------ERLERELNSIISNGFAVMYIIAQKLVWKSNEDGYLVG- 925

Query: 377  GRGSGAGSVTAYALTITDIDPLR------------------------------------- 399
             RGS   S  A    IT+++PL                                      
Sbjct: 926  SRGSVGSSFVATMAGITEVNPLSPHYYCKHCHYSDFESEEVRAFAGGCGWDMPDKNCPVC 985

Query: 400  --------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                    F + FE FL       PD D++F  D +    +Y +  +G  +  +  T G+
Sbjct: 986  GEKLVKDGFDIPFETFLGFKGNKEPDIDLNFSGDYQSNAHKYTEVIFGAGQTYRAGTVGT 1045

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            L  K A   V    +                                R  R  +  +DR+
Sbjct: 1046 LADKTAFGYVKNYYEE-------------------------------RGQRKRNCEIDRI 1074

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY-------RDVRSDLPVTQFNMKWIE 564
            +   Q   G+ R    H  GI++   PL + +  +        D+ +D+  T F+   I+
Sbjct: 1075 V---QGCTGIRRSTGQHPGGIIV--LPLGEEINSFTPVQHPANDMTTDIVTTHFDYHSID 1129

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL---------SLIPFDDHETYHLLTTK 615
               L+K D LG    T+++   ++++   ++ +          + IP DD     L    
Sbjct: 1130 H-NLLKLDILGHDDPTMIKTLEEYISSPALENEYNESDNRFVATKIPLDDKGVMSLFHDT 1188

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
              LGI   +  G      G+     + ++ +V   +P  + +++  +   +G        
Sbjct: 1189 SALGIKPDDIGGCPVGCLGIPEFGTDFVVQMVVDTQPKTLSDLIRISGLSHG-------- 1240

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE-----MDK-QK 729
               D  L   Q +I   +  +  A        +  D++   + K +  E     M+K +K
Sbjct: 1241 --TDVWLNNAQELIKSGKATISTA------ICTRDDIMTYLINKGMDSELSFTIMEKVRK 1292

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             + ++   +  + +    + +    K   Y F K+HAAAY +++Y+ A+ K +YP+ +  
Sbjct: 1293 GKGLTDDFEKSMKEAGVPDWYIWSCKQIKYMFPKAHAAAYVMMAYRIAYCKINYPLAYYG 1352

Query: 790  ASMTLEMD---------------------------------NVEKIKKFCQDARQFNIQI 816
            A   +  D                                 +  K  K  Q+      + 
Sbjct: 1353 AYFGIRADAFSYEIMCRGKDVLQHYIDEYNSRSATLSKKEQDTMKDMKIVQEMYARGYEF 1412

Query: 817  MPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            MP  +       F + D ++   L++I G+G   A  + EAS D P+ S +DF  R    
Sbjct: 1413 MPMDIYKAQATKFLIIDGKLMPPLSSIDGMGEKAAEAVAEASKDGPYLSRDDFRQRT--- 1469

Query: 876  KLNRRVLESLVFAGAL 891
            K ++ V++ +V  G L
Sbjct: 1470 KASKSVIDYMVELGIL 1485


>gi|258539791|ref|YP_003174290.1| DNA polymerase III PolC [Lactobacillus rhamnosus Lc 705]
 gi|257151467|emb|CAR90439.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus Lc 705]
          Length = 1444

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 185/909 (20%), Positives = 342/909 (37%), Gaps = 210/909 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++   T  G + L +LVS +  +    +  R+  S LQ++  EGL++ +  SSG +  A 
Sbjct: 615  IVFAKTQAGLKNLFKLVS-LSNVKYFYRVPRVPRSQLQKL-REGLLVGSACSSGEVFTAM 672

Query: 160  FFNSSQVAEKRLLTFKKL-------FGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                   A  +   +  L       +   L  +L +   + +    ++V++    E P+V
Sbjct: 673  MQKGEAEARAKAAFYDYLEIQPPAVYQPLLEADLIKGESHLKDILQKIVKIGDDLEKPVV 732

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE 272
             T +  +L + D     +L+   HS   +        PD + ++  EM+  FS L     
Sbjct: 733  VTGDVHYLDQHDAIYRKILI---HSQGGANPLNRHSLPDVHFRSTREMLDDFSWLG---- 785

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
                 A +   ++  ++ ++   I+ +   ++    ++L    V G+E +L    +A  Y
Sbjct: 786  -----AEKAQKLVVTNSNLIADLIDDDITPVK----DKLYTPEVPGVEEKLKHDVMATAY 836

Query: 333  H------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                    +   QRLD EL  I    FS  + I    +  + K+   VG  RGS   S+ 
Sbjct: 837  ELYGNPLPEIVAQRLDKELKSIIGNGFSVIYNIAQRLVLKSNKDGYLVG-SRGSVGSSLA 895

Query: 387  AYALTITDIDPL---------RFS--------------------------------LLFE 405
            A    IT+++PL         ++S                                + FE
Sbjct: 896  ATMAEITEVNPLPPHYRCPKCQYSEFFTHGEVGSGFDLPDKTCPKCGTELHKDGHDIPFE 955

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL------- 458
             FL      +PD D++F  D +     Y++  +G +   +  T G++  K A        
Sbjct: 956  TFLGFHGDKVPDIDLNFSGDYQPVAHNYIKVMFGEDHSFRAGTIGTVADKTAYGYVKAYE 1015

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
            RD G+  Q+  +++DRL                                       +Q  
Sbjct: 1016 RDTGQ--QLRGAEIDRL---------------------------------------AQGD 1034

Query: 519  EGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             G+ R    H AGI+I   D  +    P+     D  +    T F+   I    ++K D 
Sbjct: 1035 TGVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTTHFDFHSIHD-NILKMDV 1093

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLG 619
            LG    T+++   D        V+   IP DD     L +                GTLG
Sbjct: 1094 LGHDDPTMIRMLQDLSG-----VEPKSIPTDDPGVMALFSGTESLGVTPEQINSKMGTLG 1148

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            I +  +  +R  LE  +P    +++ +  L       ++ + N  +  K+ IV+      
Sbjct: 1149 IPEFGTRFVRGMLEETKPTTFSELLQISGLSHG---TDVWLGNAEELIKQGIVT------ 1199

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
              LKE   VI  ++ +M     L  + + +      +M   I E +  +K R I    + 
Sbjct: 1200 --LKE---VIGCRDNIMMD---LIHWGMDD------SMAFNIMEHV--RKGRGIPDDWQK 1243

Query: 740  GISKTIAVNIFELLAKFA-DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             + +   V  + + +     Y F K+HA AY +++ + AW K HYP+ +  A  ++  ++
Sbjct: 1244 AMRENENVPDWYIDSCLKIKYMFPKAHATAYILMALRIAWFKVHYPLVYYTAYFSVRAED 1303

Query: 799  ----------------VEKIKKFCQDARQFNIQIMPP-SVNTPCVD--FKV--------- 830
                            +++I     DA     Q++    +   C++  FK+         
Sbjct: 1304 FDLAAMSHGKEAVKAAMKEITDKGMDASAKEKQLLTVLEIANECLERGFKIKMIDVTKSD 1363

Query: 831  -------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                    D+ I     A+ G+G   A+ I+ A  +KPF S ED  +R    K+++ +++
Sbjct: 1364 SHDFLIQDDHTILAPFRAVPGLGDNVAKQIVAAREEKPFLSKEDLANR---GKVSKTLID 1420

Query: 884  SLVFAGALD 892
             +     LD
Sbjct: 1421 YMTTNHVLD 1429


>gi|146297347|ref|YP_001181118.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
            saccharolyticus DSM 8903]
 gi|145410923|gb|ABP67927.1| DNA polymerase III catalytic subunit, PolC type [Caldicellulosiruptor
            saccharolyticus DSM 8903]
          Length = 1402

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 135/647 (20%), Positives = 231/647 (35%), Gaps = 173/647 (26%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            +QRL+ ELN I +  F+  +LI    +  +  +   VG  RGS   S+ A    IT+++P
Sbjct: 812  KQRLEKELNSIIKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVGSSLVATMCGITEVNP 870

Query: 398  L---------RFS--------------------------------LLFERFLNPDRMSMP 416
            L         ++S                                + FE FL  D    P
Sbjct: 871  LPPHYVCPNCKYSEFVTDGTVGCGYDLEDKDCPRCGTKLKKDGHDIPFETFLGFDGDKEP 930

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D++F  + +    ++ ++ +G   V +  T  ++  K A           Y++   L 
Sbjct: 931  DIDLNFSGEYQPIAHKFTEDLFGQGYVFRAGTISTVAEKTA-----HGFVTKYAEEKGLS 985

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI-- 534
                    HP                        +L +SQ   G+ R    H  G++I  
Sbjct: 986  -------LHPA----------------------EVLRLSQGCTGVKRTTGQHPGGLMIVP 1016

Query: 535  GDRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             D+ +    P+     S+   +  T F+   I    L+K D LG    T+++     + Q
Sbjct: 1017 KDKEIFDFTPIQHPADSEDKSVITTHFDYHAI-SGRLLKLDILGHDDPTVIR-----MLQ 1070

Query: 592  RGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQP 637
                VD   IP DD  T  + T+               GT GI +  +  +RQ L   +P
Sbjct: 1071 DLTGVDPRSIPLDDKATLSIFTSTEALGVSPEDIDCEVGTFGIPEFGTRFVRQMLIETKP 1130

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQE 693
                +++ +  L       N+   N +   +  I ++  +I    D ML   Q  +  ++
Sbjct: 1131 KSFAELVRISGLSHGT---NVWTNNAQDLVRNGIATLKEVISTRDDIMLYLIQKGVPPKD 1187

Query: 694  QVMQIAQLLSGYSLS-EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
                +  +  G  L  E + L R+ G           E +I    K              
Sbjct: 1188 SFRIMEDVRKGKGLKPEDEELLRSYG---------VPEWYIESCKK-------------- 1224

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------ 800
                  Y F K+HAAAY +++++ A+ K HY   F A   T+  D+ +            
Sbjct: 1225 ----ITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYFTVRADDFDYATILKGREFIR 1280

Query: 801  --------KIKKFCQDARQF-------------NIQIMPPSVN-TPCVDFKVGDNRIYYS 838
                    ++    Q  +                ++  P  +N +    F + D  +   
Sbjct: 1281 QKIRDMENRMNSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAEKFIIKDGGLLIP 1340

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
              A+  VG   AR+I+EA  +  F S+ED   R    KLN++V+E L
Sbjct: 1341 FNALPNVGIAAARNIVEARKEGKFLSIEDLQRRA---KLNKQVIEIL 1384


>gi|239631345|ref|ZP_04674376.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301066623|ref|YP_003788646.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang]
 gi|239525810|gb|EEQ64811.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300439030|gb|ADK18796.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus
            casei str. Zhang]
          Length = 1444

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 191/909 (21%), Positives = 340/909 (37%), Gaps = 210/909 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++   T  G + L +LVS +  +    +  R+  S LQ++  EGL++ +  SSG +  A 
Sbjct: 615  IVFAKTQAGLKNLFKLVS-LSNVKYFYRVPRVPRSQLQKL-REGLLVGSACSSGEVFTAM 672

Query: 160  FFNSSQVAEKRLLTFKKL-------FGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                   A  +   +  L       +   +   L +   + +    +V+++    E P+V
Sbjct: 673  MQKGEAEARAKASFYDYLEVQPLPVYQPLIEAGLIKGEAHLKDIIQKVIKIGSELEKPVV 732

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE 272
            AT ++ +L + D     +L+   HS   +        PD + ++ SEM++ FS L E  E
Sbjct: 733  ATGDAHYLDQHDAIYRQILI---HSQGGANPLNRHSLPDVHFRSTSEMLTDFSWLGE--E 787

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
               E+    S             I    DD     +++L    V G+E  L    +   +
Sbjct: 788  KAHELVVDNS-----------NLIANWVDDDITPVKDKLYTPEVPGVEENLKHDVMTTAH 836

Query: 333  HAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                        QRLD EL  I    FS  + I    +  + K+   VG  RGS   S+ 
Sbjct: 837  ELYGDPLPDIVAQRLDKELKSIIGNGFSVIYNIAQRLVLKSNKDGYLVG-SRGSVGSSLA 895

Query: 387  AYALTITDIDPL---------RFS--------------------------------LLFE 405
            A    IT+++PL         ++S                                + FE
Sbjct: 896  ATMAGITEVNPLPPHYRCPNCQYSEFFTHGEIGSGFDLPDKQCPKCGADLHKDGHDIPFE 955

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL------- 458
             FL      +PD D++F  D +     Y++  +G +   +  T G++  K A        
Sbjct: 956  TFLGFHGDKVPDIDLNFSGDYQPIAHNYIKVMFGEDHSFRAGTIGTVADKTAYGYVKAYE 1015

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
            RD G+  Q+  +++DRL                                       +Q  
Sbjct: 1016 RDTGQ--QLRGAEIDRL---------------------------------------AQGD 1034

Query: 519  EGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             G+ R    H AGI+I   D  +    P+     D  +    T F+   I    ++K D 
Sbjct: 1035 TGVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTTHFDFHSIHD-NILKMDV 1093

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT-TK-------------GTLG 619
            LG    T+++   D        V+   IP DD     L + TK             GTLG
Sbjct: 1094 LGHDDPTMIRMLQDLSG-----VEPKSIPTDDPGVMALFSGTKSLGVTPEQINSKMGTLG 1148

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            I +  +  +R  LE  +P    +++ +  L       ++ + N  +  K+ IV+      
Sbjct: 1149 IPEFGTRFVRGMLEETKPTTFSELLQISGLSHG---TDVWLGNAEELIKQGIVT------ 1199

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
              LKE   VI  ++ +M     L  + + +      +M   I E +  +K R I    + 
Sbjct: 1200 --LKE---VIGCRDNIMMD---LIHWGMED------SMAFNIMEHV--RKGRGIPDDWQK 1243

Query: 740  GISKTIAVNIFELLAKFA-DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             + +   V  + + +     Y F K+HA AY +++ + AW K HYP+ +  A  ++  ++
Sbjct: 1244 AMRENENVPDWYIESCLKIKYMFPKAHATAYILMALRIAWFKVHYPLIYYTAYFSVRAED 1303

Query: 799  ----------------VEKIKKFCQDARQFNIQIMPP-SVNTPCVD--FKV--------- 830
                            +++I     DA     Q++    +   C++  FK+         
Sbjct: 1304 FDLAAMSHGKEAVKAAMKEITDKGMDASTKEKQLLTVLEIANECLERGFKIKMIDVTKSD 1363

Query: 831  -------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                    D+ I     A+ G+G   A+ I+ A  +KPF S ED  +R    K+++ +++
Sbjct: 1364 SHNFLIQDDHTILAPFRAVPGLGDNVAKQIVAAREEKPFLSKEDLANR---GKVSKTLID 1420

Query: 884  SLVFAGALD 892
             +     LD
Sbjct: 1421 YMTTNHVLD 1429


>gi|52080261|ref|YP_079052.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580]
 gi|52785638|ref|YP_091467.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580]
 gi|52003472|gb|AAU23414.1| DNA polymerase III (alpha subunit) [Bacillus licheniformis ATCC
            14580]
 gi|52348140|gb|AAU40774.1| PolC [Bacillus licheniformis ATCC 14580]
          Length = 1438

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 168/814 (20%), Positives = 296/814 (36%), Gaps = 220/814 (27%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKN 256
            + + +L     +P+VAT N  +L+ ED     +L++    +  +++ + P V    + ++
Sbjct: 719  ANITKLGEKLNIPVVATGNVHYLNPEDKIYRKILVSSQGGANPLNRHELPNV----HFRS 774

Query: 257  RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
              EM+  FS L E  E   EI  + +           R I +  ++I K  +++L    +
Sbjct: 775  TDEMLEAFSFLGE--EKAKEIVVKNT-----------RMISERIEEI-KPIKDDLYTPKI 820

Query: 317  AGL--EVRLAQGAIAKGYHAQDY----RQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
             G   E+R      A+  + +D      +R++ EL  I    F+  +LI    ++ +  +
Sbjct: 821  EGADDEIRRMSYEKARSIYGEDLPEIVEKRIEKELKSIIGHGFAVIYLISHKLVKRSLDD 880

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPL---------RFS-------------------- 401
               VG  RGS   S+ A    IT+++PL         R S                    
Sbjct: 881  GYLVG-SRGSVGSSLVATLTEITEVNPLPPHYVCPDCRHSEFFNDGSVGSGFDLPDKDCP 939

Query: 402  ------------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                        + FE FL      +PD D++F  + +     Y +  +G + V +  T 
Sbjct: 940  KCGAAYRKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHNYTKVLFGEDNVYRAGTI 999

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++  K A           Y  V                 +  A+D+      +    +D
Sbjct: 1000 GTVAEKTA-----------YGYV-----------------KGYANDNNLH---MRGAEID 1028

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------T 556
            RL+   Q   G+ R    H  GI++        VP Y D+    P+             T
Sbjct: 1029 RLV---QGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFSPIQFPADATDSEWKTT 1077

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL---- 612
             F+   I    L+K D LG    T+++   D        +D   IP DD E   +     
Sbjct: 1078 HFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFQGTE 1131

Query: 613  ----------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                         GTLGI +  +  +RQ LE  +P    +++ +  L     +       
Sbjct: 1132 SLGVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHGTDV------- 1184

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA----DVLRRAMG 718
               N +E       LI   + E   VI  ++ +M +  +  G   S A    + +R+  G
Sbjct: 1185 WLGNAQE-------LIHNNICELSEVIGCRDDIM-VYLIYQGLEPSLAFKIMEFVRKGKG 1236

Query: 719  --KKIKEEMDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
               + +EEM      + +I    K                    Y F K+HAAAY +++ 
Sbjct: 1237 LTPEWEEEMKNNNVPDWYIDSCKK------------------IKYMFPKAHAAAYVLMAV 1278

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVNTPC 825
            + A+ K H+P+ + AA  T+  D+ +          I+    D     +   P   +   
Sbjct: 1279 RIAYFKVHHPLLYYAAYFTVRADDFDIETMIKGSTAIRAVMDDINSKGLDASPKEKSLLT 1338

Query: 826  V-------------------------DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
            V                         +F +  N +     +I G+GT  A +I++A  + 
Sbjct: 1339 VLELALEMCERGFSFQKVDLYRSSASEFIIDGNSLIPPFNSIPGLGTNAALNIVKAREEG 1398

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L+  
Sbjct: 1399 EFLSKEDLQKR---GKVSKTIMEYLERHGCLESL 1429


>gi|294791899|ref|ZP_06757047.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            sp. 6_1_27]
 gi|294457129|gb|EFG25491.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            sp. 6_1_27]
          Length = 1245

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 189/993 (19%), Positives = 372/993 (37%), Gaps = 186/993 (18%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S V L +H+  S  +  +S+ ++   I     PA+AITD   + +  E        G++ 
Sbjct: 317  SRVELHLHTKMSDKDALVSVKDLFKTIKKWGHPAVAITDHGVVQAFPEAQALGKELGVKV 376

Query: 70   IIGCQ------LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            I G +        +   +   +  + K        I+LL     G + L +++S  +L +
Sbjct: 377  IYGVEGYLIEDETVTKDEEPVLDKKKKKEKDKRYHIILLAKNMVGLRNLYKMISISHL-E 435

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
              K   R+  S ++E   EG+I+ +   +G + ++    +++   + LL     +    Y
Sbjct: 436  HYKVRPRLPRSVIEE-HREGIIIGSACEAGELMQSIVRGATK---EELLEIASFYD---Y 488

Query: 184  VNLQRH--------RGYDRYRES------QVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            + +Q H        +G     ++       V++L      P+ AT +  +L+ E+    +
Sbjct: 489  LEIQPHTNNTFLVRKGLMPDEQALIDMNKTVIELGEALNKPVCATCDVHYLTPEEKIYRE 548

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQV 287
            +++         ++      PD +L+   EM++ F  L E  A E  V   R  +  ++ 
Sbjct: 549  IMLTACGYPDADEQ------PDLHLRTTDEMLASFPYLSEEKAYEVVVTNTRAINDSIED 602

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              P+          D     + E  ++A   +  R A+ AI      +  ++RLD+EL+ 
Sbjct: 603  IKPV---------PDGTYSPKIEGADEAFTEMCYRNAK-AIYGDPLPRVVQERLDYELDC 652

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--------- 398
            I    +   + I    ++ +  +   VG  RGS   S  A    IT+++PL         
Sbjct: 653  IISNGYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPHYVCPHC 711

Query: 399  RFSLLFER--------------------------------FLNPDRMSMPDFDIDFCQDR 426
            ++S  FE+                                FL  +   +PD D++F  D 
Sbjct: 712  KYSEFFEKGEYAGGFDLPRKDCPKCGHPLQTNGHDIPFAIFLGFEGDKVPDIDLNFSGDY 771

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            + +  +Y +  +G + V +  T G++  K A   V +     Y+++              
Sbjct: 772  QAKAHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKK-----YAEI-------------- 812

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVP 544
               + I   + F E             +++    +      H  GI++  R +      P
Sbjct: 813  ---RDIQARNGFFE------------HLAKGFTNVKNTTGQHPGGIMVCPRDMDVHHFTP 857

Query: 545  MYRDV---RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            +        S +  T F+   IE   + K D LG    T+++   D        +D   I
Sbjct: 858  IQHPANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIRMLEDLTG-----IDAKTI 911

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII-ALVSLYRPGPIDNIVV 660
            PFDD +T  L ++   +G+   +  G + A   + P+C    +  ++   RP    ++V 
Sbjct: 912  PFDDPKTLSLFSSTEGIGLTPEQLQGDQVASLAV-PECGTKFVRGMLEDSRPQTFSDLVR 970

Query: 661  YNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRA 716
             +   +G    + +   LI     +    I  ++ VM       +   +S    + +R+ 
Sbjct: 971  ISGFSHGTNVWLDNAQDLIKNGTCKLNEAISTRDDVMNFLIHRGMDRKHSFFVMENVRKG 1030

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             G + + +  +    F +   +N I +      F    K   Y F ++HA AY +++++ 
Sbjct: 1031 KGIEKRNKQGQATTEFEAEMRENNIPE-----WFIESCKKISYLFPRAHAVAYVMMAFRI 1085

Query: 777  AWMKTHYPVEFLAASMTL----------------EMDNVEKIKKFCQDA----------- 809
            AW K ++P+ F AA  ++                ++    +IK   + A           
Sbjct: 1086 AWFKVYHPLAFYAAYFSIRAKAFDLRIMTGDLKTQLTEFNRIKALDRAASPKDKDLMSAL 1145

Query: 810  -----------RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                       R  N+ I     ++    F + D  +     AI  +G T A  I+E   
Sbjct: 1146 EVSMEMYQRGYRFINVDIQ----HSEARRFSIKDGALLPPFLAIDSLGETVADAIVEERN 1201

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            ++PF SL+D   R         +++ L   G L
Sbjct: 1202 ERPFTSLKDLQRRCKVSNTIIDLMKDLKCCGEL 1234


>gi|312135559|ref|YP_004002897.1| DNA polymerase III subunit alpha [Caldicellulosiruptor owensensis OL]
 gi|311775610|gb|ADQ05097.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor owensensis
            OL]
          Length = 1402

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 189/900 (21%), Positives = 326/900 (36%), Gaps = 209/900 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +LV   +G + L +LVS  +L +   +  RI  S+L ++  +GL++ +   SG I RAF
Sbjct: 582  TILVKNQQGLKNLYKLVSYSHL-EYFYKRPRIPKSFLIQL-KDGLLIGSACESGEIFRAF 639

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVN--LQRHRGYDRYRES------QVVQLAYTHELPL 211
                S+   +++ TF          N       GY +  ES      ++ QL       +
Sbjct: 640  LEGKSEEEIEKIATFYDFLEIMPVENNSFLIREGYLKDEESLREINKKIYQLGKKLGKLV 699

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL-PEA 270
            VAT+++ +          +L    H+   +  +     P  Y +   EM+  F  L P+A
Sbjct: 700  VATSDAHYCHPHQRVLRQIL---KHNQGYNDVEN---DPQLYFRTTDEMLKEFEYLGPDA 753

Query: 271  -----LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
                 +ENT +IA     +  +     P  IE        EEE       +  + ++ A 
Sbjct: 754  CYEVVVENTNKIADMIEDVKPIPDETFPPKIE------GAEEE-------IYNMTMKKAH 800

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
              I      +  R RL+ ELN I +  F+  +LI    +  +  +   VG  RGS   S+
Sbjct: 801  -EIYGDPLPEIVRARLEKELNSIIKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVGSSL 858

Query: 386  TAYALTITDIDPL---------RFS--------------------------------LLF 404
             A    IT+++PL         ++S                                + F
Sbjct: 859  VATMCGITEVNPLPPHYVCPNCKYSEFITDGSAGCGYDLEDKNCPRCGKKLKKDGHDIPF 918

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  D    PD D++F  D +    ++ +  +G   V +  T  ++  K A       
Sbjct: 919  ETFLGFDGDKEPDIDLNFSGDYQPIAHKFTEELFGQGYVFRAGTISTVAEKTA-----HG 973

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                Y++   L         HP                        +L +SQ   G+ R 
Sbjct: 974  FVTKYAEEKGLS-------LHPA----------------------EILRLSQGCTGVKRT 1004

Query: 525  ASTHAAGIVI--GDRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  G++I   D+ +    P+     S+   +  T F+   I    L+K D LG    
Sbjct: 1005 TGQHPGGLMIVPRDKEIFDFTPIQHPADSEDKSVITTHFDYHAI-SGRLLKLDILGHDDP 1063

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLES 625
            T+++     + Q    VD   IP DD +T  + T+               GT GI +  +
Sbjct: 1064 TVIR-----MLQDLTGVDPRSIPLDDKDTMSIFTSTEALGISPEDIDCEVGTFGIPEFGT 1118

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI----DPM 681
              +RQ L   +P    +++ +  L       N+   N +   +  I ++  +I    D M
Sbjct: 1119 RFVRQMLIETKPKTFAELVRISGLSHGT---NVWTNNAQDLVRNGIATLKEVISTRDDIM 1175

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLS-EADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            L   Q  +  ++    +  +  G  L  E + L RA             + +I    K  
Sbjct: 1176 LYLIQKGVPPKDSFRIMEDVRKGKGLKPEDEQLLRAHN---------VPDWYIESCKK-- 1224

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
                              Y F K+HAAAY +++++ A+ K H+   F A   T+  D+ +
Sbjct: 1225 ----------------ITYMFPKAHAAAYVMMAFRIAYFKVHFKEAFYATYFTVRADDFD 1268

Query: 801  --------------------KIKKFCQDARQF-------------NIQIMPPSVNTPCVD 827
                                +I    Q  +                ++  P  +N    +
Sbjct: 1269 YATILNGRDAIRQKIRDLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAE 1328

Query: 828  -FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             F + D  +     A+  VG   A+ I+EA  +  F S++D   R    KLN++V+E L 
Sbjct: 1329 RFIIKDGGLLIPFNALPNVGVAAAKSIVEARKEGRFLSVDDLQRRA---KLNKQVIEILT 1385


>gi|290968855|ref|ZP_06560392.1| DNA polymerase III, alpha subunit, Gram-positive type [Megasphaera
            genomosp. type_1 str. 28L]
 gi|290781151|gb|EFD93742.1| DNA polymerase III, alpha subunit, Gram-positive type [Megasphaera
            genomosp. type_1 str. 28L]
          Length = 1199

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 211/1004 (21%), Positives = 362/1004 (36%), Gaps = 228/1004 (22%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL--FSALEFSQKACAAGIQP 69
            V L +H+  S ++  +++  ++  +     PA+A+TD   +  F  L+      +  ++ 
Sbjct: 286  VELHLHTVMSDMDALITVKQLIKTVKKWHHPAVAVTDHGVVQSFPLLQEISTDKSNQVKV 345

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G +  +   D +  +            I++L     G + L  LVS  +L    +   
Sbjct: 346  IYGMEGYL-FDDRIDRSYH----------IIILAKNQVGIRNLYRLVSISHLKYIYRGRP 394

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE-KRLLTFKKLFGDRLYVNLQR 188
            RI  + L E   EGLI+ +   +G + R+         E KR+ ++     D L +    
Sbjct: 395  RIPRAILNEY-REGLILGSACEAGELIRSMVQKKLPYEELKRIASWY----DYLEIQPIS 449

Query: 189  HRGY----------DRYRESQVVQLAYTHELP--LVATNNSLFLSEEDYEAHDVLMAVAH 236
            + G+          +  R      L    EL    VAT ++ FL+ ED    ++LM    
Sbjct: 450  NNGFLVREGLVKDEEGLRNINRTVLKIGDELGKLTVATGDAHFLNPEDKIYREILM---- 505

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
             T    +D  +  PD Y     EM+  FS L E     V I                  I
Sbjct: 506  -TGKGFED-AQYQPDLYFHTTDEMLKEFSYLGEERAREVVITNTNK-------------I 550

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIAR 350
             +  +D++   +  L    +AG    L +    K Y        +    RL  E   I  
Sbjct: 551  NEMIEDVRPIPKETLYFPKIAGSSEALKKMCYDKAYKLYGNPLPKIVADRLTEEFTSILG 610

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFS 401
              F   + I    ++ +  +   VG  RGS   S  A    IT+++PL         ++S
Sbjct: 611  NGFGVLYYIAHKLVKHSHDDGYLVG-SRGSVGSSFVATMADITEVNPLPPHYVCPSCQYS 669

Query: 402  LLFER--------------------------------FLNPDRMSMPDFDIDFCQDRRDE 429
              F +                                FL  D   +PD D++F  +   +
Sbjct: 670  EFFIKGEVGGGFDLPHKKCPHCGASLHKDGHNIPFAIFLGFDGDKVPDIDLNFSGEYHPQ 729

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
              +Y +  +G + V +  T G+++ K A           Y  V +  +            
Sbjct: 730  AHKYTEELFGKDNVFRAGTIGAVKDKTA-----------YGYVMKWAEK----------- 767

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR 547
                     R  ++ D  ++ L+       G+      H  G+++   D  +    P+  
Sbjct: 768  ---------RGIKVNDAYINSLV---SGCTGVKNTTGQHPGGVMVIPRDMDVHHFTPVQY 815

Query: 548  DVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                  S +  T F+   IE   L+K D LG    T+++   D        VD   I FD
Sbjct: 816  PANKKDSGIITTHFDYHSIE-GRLVKLDILGHDDPTVIRMLEDLTG-----VDARTIAFD 869

Query: 605  DHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            D ET  L  +               G+LGI +  +S +R+ L   +P    +++  +S +
Sbjct: 870  DAETMSLFCSPAALGLTPEELGSPVGSLGIPEFGTSFVRKMLLDTKPKTFSELVR-ISGF 928

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
              G     V  NN ++          LI      T G +  +E V     +++ Y +   
Sbjct: 929  SHG---TDVWLNNAQD----------LI------TSGTVPLKEAVSTRDDIMN-YLIQHG 968

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKT------IAVNIFELL---AKFADYGF 761
              ++     K+ E + K K   I   +K G   T       A NI +      K   Y F
Sbjct: 969  --IQPKTSFKVMENVRKGKG--IDKVNKVGEKTTDFEGELKAGNIPDWFIESCKKIGYLF 1024

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE-------------------MDNVE-- 800
             ++HA AY +++++ AW K HYP+ + AA  T+                    M ++E  
Sbjct: 1025 PRAHAVAYVMMAFRIAWFKIHYPLAYYAAYFTIRAKAFKLSAMIHGLEVQKKVMKDIEAK 1084

Query: 801  -----KIKKFCQDARQFNIQIMPPSVNTPCVD--------FKVGDNRIYYSLAAIKGVGT 847
                 KI+     A +  +++     +   VD        F + D +I     AI G+G 
Sbjct: 1085 GTKASKIETDLYSALELAVEMSLRGFSFLNVDIHRSQAKKFIICDGKILPPFTAIDGLGD 1144

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              A  I+ A    PF S ED   R    K+ + +L+ +  AG L
Sbjct: 1145 NVAEQIVAAREKAPFSSKEDLRLR---GKIGQSLLDVMTEAGCL 1185


>gi|154500376|ref|ZP_02038414.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC 29799]
 gi|150270881|gb|EDM98164.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC 29799]
          Length = 1390

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 172/798 (21%), Positives = 297/798 (37%), Gaps = 192/798 (24%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V L    + P+ AT +  FL  ED     +L+    +      D P      Y K   E
Sbjct: 669  IVALGKALDKPVCATGDVHFLDPEDEIYRHILL---DTKGFEDCDAPLPL---YFKTTEE 722

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA--VA 317
            M+  FS L    E+   +  R +             +   CD I    +     K    A
Sbjct: 723  MMEEFSYL--GKEDCYNVVVRNT-----------NLVADWCDRINPLPKGLFAPKLEDSA 769

Query: 318  GLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            G   RL  G  AK  + ++  Q    R++ EL  I +  +   ++     +Q + ++   
Sbjct: 770  GELSRLVWGK-AKSLYGEEVPQIVSDRINAELGDILKRHYDVIYMSAQKLVQNSLEHGYL 828

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLR---------------------------------- 399
            VG  RGS   S+ A+   IT+++ L                                   
Sbjct: 829  VG-SRGSVGSSLVAFMSGITEVNSLPPHYRCPNCKHSDFEIAKELGAGCGADMPDAVCPV 887

Query: 400  ---------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
                     F++ FE FL      +PD D++F  + + +  RY    +G   V +  T G
Sbjct: 888  CGAQYAKDGFNIPFETFLGFGGDKVPDIDLNFSGEYQAKAHRYTFELFGETHVFRAGTIG 947

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            ++  K A   V + L+     V R                  A+++R             
Sbjct: 948  TVAEKTAFGYVKKYLEKRGIHVPR------------------AEENR------------- 976

Query: 511  LLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEK 565
               ++    G+ R    H  G+V+   +R +    P+     D  +D+  T F    +E 
Sbjct: 977  ---LAHGCTGVKRTTGQHPGGMVVIPQNREIYDFCPVQHPADDPNTDIVTTHFEYHSME- 1032

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK---------- 615
            + L+K D LG    T++ + L+ L     + D   IP DD +T  L T+           
Sbjct: 1033 SNLLKLDMLGHDDPTMI-RMLEDLTGVNARTD---IPLDDKKTMSLFTSSEELGFVDDPV 1088

Query: 616  ----GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                G + I +  +S +R  LE   P    DI+  +S +  G   ++ +     N K+ I
Sbjct: 1089 LGPTGAVAIPEFGTSFVRGMLEDTSPSEF-DILIRLSGFSHG--TDVWL----GNAKDLI 1141

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
            V+            QG+ + Q    +   +L  + +S     +R+   KI E +  +K R
Sbjct: 1142 VN------------QGIPVGQAIGCRDDIML--FLISCGMPEKRSF--KIMESV--RKGR 1183

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
             +   +++ +      + +    K   Y F K+HA AY +++++ AW K H P+ F AA 
Sbjct: 1184 GLPEGAEDEMKAAGVPDWYIGSCKKIKYLFPKAHAVAYVMMAFRIAWFKVHRPLAFYAAY 1243

Query: 792  MTLE------------MDNVE-KIKKF-CQDARQFNIQIMPPSVNTPCVDF--------- 828
             ++             MD V+ K+K+   +D     ++    +    C +F         
Sbjct: 1244 FSIRAKAFDETYMCRGMDVVKAKMKEIKAKDKEATAVEQDMLTTLEVCYEFYLRGFTFEH 1303

Query: 829  --------------KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                          K  D  +    +AI G+G T A  IME    K F S+E+F +    
Sbjct: 1304 VDLYKSHAINFIFSKTNDKALIPPFSAIPGLGETAAWSIMEQREGKEFISVEEFSAAC-- 1361

Query: 875  KKLNRRVLESLVFAGALD 892
             K+++  +E L  AGA+D
Sbjct: 1362 PKVSKTHIELLKAAGAMD 1379


>gi|153938397|ref|YP_001391721.1| DNA polymerase III PolC [Clostridium botulinum F str. Langeland]
 gi|152934293|gb|ABS39791.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum F str. Langeland]
 gi|295319747|gb|ADG00125.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum F str. 230613]
          Length = 1432

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 191/902 (21%), Positives = 331/902 (36%), Gaps = 201/902 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +++L   A G + L +LVS+  L    K+  R+  S + E   EGLI+ +   +G I + 
Sbjct: 609  LIILAKNAVGLKNLYKLVSKSNLEYFFKRP-RMAKSLINEY-KEGLIIGSACEAGQIYKE 666

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
                 ++   K ++ F      + L  +   V     +     +E   ++ +L   +  P
Sbjct: 667  ILKGKTKEELKNMIDFYDYLEIQPLGNNEFLVKNGSVKDEKELQEINKKICELGEFYNKP 726

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
            +VAT +  FL EE      +LM+       S  D     P  Y +   EM+  F  L E 
Sbjct: 727  VVATCDVHFLDEEHEVFRRILMS---GQGFSDADN---QPPLYFRTTEEMLKEFEYLGEE 780

Query: 270  -----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
                  + NT +IA     I  +     P  IE   +DI++             + +  A
Sbjct: 781  KAKEVVIYNTNKIADMIDEIKPIPEETFPPKIEGAEEDIRR-------------MTIEKA 827

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              AI      +   +RL  ELN I    ++  +LI    +  + ++   VG  RGS   S
Sbjct: 828  H-AIYGDPLPEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SRGSVGSS 885

Query: 385  VTAYALTITDIDPL---------RFS--------------------------------LL 403
              A    IT+++ L         ++S                                + 
Sbjct: 886  FAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIKDGHDIP 945

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A   V +
Sbjct: 946  FETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTAYGFVKK 1005

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             L                                 +  +  +  ++RL   S+   G+ R
Sbjct: 1006 YLDE-------------------------------KNIKANNAEIERL---SKGCTGVKR 1031

Query: 524  HASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
             +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D LG   
Sbjct: 1032 TSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSIS-GRLLKLDILGHDD 1090

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLE 624
             T+L+     + Q   KVD   +P  D +   L T+               GT G+ +  
Sbjct: 1091 PTILR-----MLQDLTKVDPKSVPLGDPKVISLFTSPEALGVTEEDIDCPVGTYGLPEFG 1145

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +  +RQ L   +P    + +A +S    G   ++ + N +   KE   +I   I      
Sbjct: 1146 TKFVRQMLLDTKPKSFAE-LARISGLSHGT--DVWLNNAQYFIKEGYTTIKDCIST---- 1198

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK-QKERFISGASKNGISK 743
               +++Y  Q     +L    + +  + +R+  GK + EE +   KE  +         K
Sbjct: 1199 RDDIMVYLLQ----KELPPKSAFTIMEKVRK--GKGLTEEQEALMKEHDVPDWYIESCKK 1252

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---- 799
                           Y F K HA AY +++ + A+ K +YP  + A   ++  D+     
Sbjct: 1253 I-------------KYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADL 1299

Query: 800  -----EKIK------------------------KFCQDARQFNIQIMPPSV-NTPCVDFK 829
                 EKIK                        + C +  +  I+ +   +  +    F 
Sbjct: 1300 IVKGEEKIKEKMNELYAMGNNIAQKDKGLLTILEICYEMYKRGIKFLKVDLYKSNATKFL 1359

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +  + I   L+A++GVG   A+ I EA  +  F S ED   R    K+ + V+E+L   G
Sbjct: 1360 IEGDNIRPPLSALQGVGKNAAKSIEEARLEGEFISKEDLRLRT---KVTKTVIETLENHG 1416

Query: 890  AL 891
             L
Sbjct: 1417 CL 1418


>gi|325571082|ref|ZP_08146654.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
 gi|325156167|gb|EGC68353.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
          Length = 1449

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 154/798 (19%), Positives = 284/798 (35%), Gaps = 214/798 (26%)

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL-PE 269
            +VAT N+ +L+EED     VL+   +S   +        PD + +   EM++ F  L PE
Sbjct: 734  VVATGNAHYLNEEDAIYRKVLI---NSMGGANPLNRHSLPDVHFRTTDEMLTAFQFLGPE 790

Query: 270  ALENTV-----EIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  V     +IA  C  ++ V    + P +P   E+E  D+      EL    +  + 
Sbjct: 791  VAKEIVVTNPNKIADLCEKVIPVKDDLYTPKIPG-SEQEITDLSYNRAKELYGDPLPEI- 848

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                              +RL  EL+ I    FS  +LI    +  + ++   VG  RGS
Sbjct: 849  ----------------VEKRLKKELDSIIGNGFSVIYLISQKLVHKSNQDGYLVG-SRGS 891

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S  A    IT+++PL                                          
Sbjct: 892  VGSSFVATMTGITEVNPLAPHYYCPDCQYSEFYEDGSYGSGYDMPEKKCPKCGTRLNKDG 951

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA-- 457
              + FE FL      +PD D++F  + + E   Y +  +G E V +  T G++  K A  
Sbjct: 952  HDIPFETFLGFHGDKVPDIDLNFSGEYQPEAHNYTKVLFGEEYVYRAGTIGTVADKTAFG 1011

Query: 458  -LRDVGRALQMPY--SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
             ++   R   + Y  ++VDRL K                                     
Sbjct: 1012 FVKGFERDHNLHYRAAEVDRLAK------------------------------------- 1034

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
                 G+ R    H  GI++        +P Y DV    P+             T F+  
Sbjct: 1035 --GATGVKRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDQNSEWKTTHFDFH 1084

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------- 612
             I    ++K D LG    T+++   D        +D   IP DD E   +          
Sbjct: 1085 SIHD-NILKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMRIFGGTDVLGVT 1138

Query: 613  -----TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
                 +  GTLGI +  +  +R  L+   P    +++ +  L     +          N 
Sbjct: 1139 EEQIYSKTGTLGIPEFGTRFVRGMLDQTHPSTFAELLQISGLSHGTDV-------WLGNA 1191

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E I      +  ++     +++Y    +  A L  G +    + +R+    KI +++  
Sbjct: 1192 EELIRRGDASLAEVIGCRDDIMVY----LIHAGLDDGMAFKIMETVRKGQWNKIPDDL-- 1245

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             ++ ++    +N + +    +  ++      Y F K+HAAAY +++ + A+ K ++P+ +
Sbjct: 1246 -RDTYLQAMRENNVPEWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPILY 1299

Query: 788  LAASMTLEMDNVEKI------------------KKFCQDARQFNIQIMPPSVN------- 822
              A  ++  D+ + I                  K      ++ N+  +    N       
Sbjct: 1300 YCAYFSVRADDFDLIAMSKGKDAVKERMQEITDKGLDASTKEKNLLTVLELANEMLERGY 1359

Query: 823  ---------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                     +   +F +   ++     A+  +G   A+ I+EA  + PF S ED  +R  
Sbjct: 1360 EFGMIDLYKSDAENFVIDGKKLIAPFRAVPSLGLNVAKQIVEARKNGPFLSKEDLANR-- 1417

Query: 874  SKKLNRRVLESLVFAGAL 891
              K+++ ++E +   G L
Sbjct: 1418 -GKVSKTLIEYMTDNGVL 1434


>gi|297530567|ref|YP_003671842.1| DNA polymerase III subunit alpha [Geobacillus sp. C56-T3]
 gi|297253819|gb|ADI27265.1| DNA polymerase III, alpha subunit [Geobacillus sp. C56-T3]
          Length = 1444

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 168/810 (20%), Positives = 295/810 (36%), Gaps = 216/810 (26%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V L    ++P+VAT N  +L+ ED     +L+   HS   +        PD Y +  +E
Sbjct: 727  IVALGEKLDIPVVATGNVHYLNPEDKIYRKILI---HSQGGANPLNRHELPDVYFRTTNE 783

Query: 260  MVSIFSDL-PE-----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            M+  FS L PE      ++NT +IA     +  +   +    IE   ++I+  E +  R 
Sbjct: 784  MLDCFSFLGPEKAKEIVVDNTQKIASLIGDVKPIKDELYTPRIEGADEEIR--EMSYRRA 841

Query: 314  KAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            K + G  + +L +             +RL+ EL  I    F+  +LI    ++ +  +  
Sbjct: 842  KEIYGDPLPKLVE-------------ERLEKELKSIIGHGFAVIYLISHKLVKKSLDDGY 888

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLR--------------------------------- 399
             VG  RGS   S  A    IT+++PL                                  
Sbjct: 889  LVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPNCKHSEFFNDGSVGSGFDLPDKNCPRC 947

Query: 400  --------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                      + FE FL      +PD D++F  + +     Y +  +G + V +  T G+
Sbjct: 948  GTKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDNVYRAGTIGT 1007

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            +  K A           Y  V                 +A A D    E R A+  +DRL
Sbjct: 1008 VADKTA-----------YGFV-----------------KAYASDHNL-ELRGAE--IDRL 1036

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQF 558
               +    G+ R    H  GI++        VP Y ++    P+             T F
Sbjct: 1037 ---AAGCTGVKRTTGQHPGGIIV--------VPDYMEIYDFTPIQYPADDTSSEWRTTHF 1085

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--- 615
            +   I    L+K D LG    T+++   D        +D   IP DD +   + ++    
Sbjct: 1086 DFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPDVMGIFSSTEPL 1139

Query: 616  -----------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
                       GT+GI +  +  +RQ LE  +P    +++ +  L     +         
Sbjct: 1140 GVTPEQIMCNVGTIGIPEFGTRFVRQMLEETRPKTFSELVQISGLSHGTDV-------WL 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             N +E I +    +  ++     +++Y   + +  +    + + E+    + +  + + E
Sbjct: 1193 GNAQELIQNGTCTLSEVIGCRDDIMVY--LIYRGLEPSLAFKIMESVRKGKGLTPEFEAE 1250

Query: 725  MDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            M K    E +I    K                    Y F K+HAAAY +++ + A+ K H
Sbjct: 1251 MRKHDVPEWYIDSCKK------------------IKYMFPKAHAAAYVLMAVRIAYFKVH 1292

Query: 783  YPVEFLAASMTLEMDN----------------VEKIK---------------------KF 805
            +P+ + A+  T+  ++                +E+I                      + 
Sbjct: 1293 HPLLYYASYFTVRAEDFDLDAMIKGSAAIRKRIEEINAKGIQATAKEKSLLTVLEVALEM 1352

Query: 806  CQDARQF-NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            C+    F NI +      +   +F +  N +     AI G+GT  A+ I+ A  +  F S
Sbjct: 1353 CERGFSFKNIDLY----RSQATEFVIDGNSLIPPFNAIPGLGTNVAQAIVRAREEGEFLS 1408

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             ED   R    KL++ +LE L   G LD  
Sbjct: 1409 KEDLQQR---GKLSKTLLEYLESRGCLDSL 1435


>gi|315641197|ref|ZP_07896274.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
 gi|315482964|gb|EFU73483.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
          Length = 1445

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 184/910 (20%), Positives = 330/910 (36%), Gaps = 216/910 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +LV T +G + L +L+S   +     +  RI  S L ++  EGLI+ +G   G +  A 
Sbjct: 619  TILVQTQKGLKNLFKLISMSNVTYFHDKVPRIPRSELVKL-REGLIVGSGCDKGEVFVAM 677

Query: 160  FFNSSQVAEKRLLTF--------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPL 211
                 + A K+L  F        K ++   +   L ++        + ++Q+      P+
Sbjct: 678  MQKGVEAA-KKLAEFYDYIEIMPKPVYAPLIEQELIKNEADLEEIITNLIQIGDELNKPV 736

Query: 212  VATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
            VAT N  +L+EED     +L+ ++  +  +++   P+V    + +   +M+  F  L   
Sbjct: 737  VATGNVHYLNEEDSIYRKILINSMGGANPLNRHSLPKV----HFRTTDDMLREFDFLGSE 792

Query: 270  -----ALENTVEIARRCSFILQV----HAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
                  + N   +  RC  ++ V    + P +P   E+E   +      EL    +  + 
Sbjct: 793  RAQEVVVTNPNALVDRCETVVPVKDKLYTPKIPG-SEEEITQLSYTRAKELYGDPLPDI- 850

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                              +RL+ EL+ I    FS  +LI    +  + ++   VG  RGS
Sbjct: 851  ----------------VEKRLEKELHSIIGNGFSVIYLISQKLVHKSNQDGYLVG-SRGS 893

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S  A    IT+++PL                                          
Sbjct: 894  VGSSFVATMTGITEVNPLAPHYYCPNCQYSEFYEDGSFGSGFDMPEKKCPKCDARLKKDG 953

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL      +PD D++F  + + E   Y +  +G + V +  T G++  K A  
Sbjct: 954  HDIPFETFLGFHGDKVPDIDLNFSGEYQPEAHNYTKVLFGEDYVYRAGTIGTVADKTAY- 1012

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                     Y +   L                      FR A      +DRL   ++   
Sbjct: 1013 ----GFVKGYERDHNL---------------------HFRGAE-----IDRL---AKGAT 1039

Query: 520  GLYRHASTHAAG-IVIGD-RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H  G IVI D   +    P+     D+ S+   T F+   I    ++K D L
Sbjct: 1040 GVKRTTGQHPGGIIVIPDYMEVYDFTPIQFPADDIHSEWKTTHFDFHSIHD-NILKLDIL 1098

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGI 620
            G    T+++   D        +D   IP DD E   +               +  GTLGI
Sbjct: 1099 GHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFEGTDVLGVTQEAIYSKTGTLGI 1153

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +R  LE   P    +++ +  L     +          N +E I      +  
Sbjct: 1154 PEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDV-------WLGNAEELIRRGEANLAN 1206

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG--KKIKEEMDKQK--ERFISGA 736
            ++     +++Y    +  A L  G +    + +R+  G     +EEM KQ   E +I   
Sbjct: 1207 VIGCRDDIMVY----LIHAGLDDGLAFKIMESVRKGKGIPDDWQEEMRKQNVPEWYIDSC 1262

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE- 795
             K                    Y F K+HAAAY +++ + A+ K ++P+ +  A  ++  
Sbjct: 1263 LK------------------IKYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAYFSVRA 1304

Query: 796  --------------------------MD------NVEKIKKFCQD--ARQFNIQIMPPSV 821
                                      MD      N+  + + C +   R +N   M    
Sbjct: 1305 ADFDLVAMSKGKQAVKDLMKEINDKGMDASTKEKNLLTVLELCNEMLERGYNFG-MIDLY 1363

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
             +   +F +  + +     A+  +G + A+ I+EA  D PF S ED  +R    K+++ +
Sbjct: 1364 KSDAENFVIDGDTLIAPFRAVPSLGLSVAKQIVEARKDGPFLSKEDLANR---GKVSKTL 1420

Query: 882  LESLVFAGAL 891
            +E +   G L
Sbjct: 1421 IEYMTDNGVL 1430


>gi|291530449|emb|CBK96034.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium siraeum
            70/3]
          Length = 1605

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 162/773 (20%), Positives = 287/773 (37%), Gaps = 155/773 (20%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++LV    G + L  L+S   L D   +  RI  S L +   EGLI+ +   +G + RA 
Sbjct: 783  IILVKNKVGLKNLYRLISASNL-DYFYKKPRIPKSLLSQY-REGLIIGSACEAGELFRAI 840

Query: 160  FFNSSQVAEKRLLTFKKLF-----GDRLYV--NLQRHRGYD-RYRESQVVQLAYTHELPL 211
                SQ   + + +F         G+ +++  N +     D R     +V+L      P+
Sbjct: 841  LEKESQEKIEEIASFYDYLEIQPIGNNMFLLRNGKVSSEEDLRDLNRAIVELGDRLGKPV 900

Query: 212  VATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
            VAT +  F   ED    +VL A   +    +Q       P  Y +   EM+  F+ L E 
Sbjct: 901  VATCDVHFKDPEDAVFREVLQAGQGYEDFANQ-------PPLYFRTTDEMLEEFAYLGEE 953

Query: 270  -ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
             A E  +    R + +++V  PI         D   +E +    ++A A     L +   
Sbjct: 954  KAKEVVITNTNRIADMIEVVRPIPTGTYTPHIDGADEELQQLCWDRAHAWYGDNLPETV- 1012

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                      +RL  EL+ I +  F+  ++I    + +++KN   VG  RGS   SV A 
Sbjct: 1013 ---------EKRLKKELDSIIKHGFAVLYMIAQKLVAFSEKNGYLVG-SRGSVGSSVVAI 1062

Query: 389  ALTITDIDPL-----------------------------------------RFSLLFERF 407
               I++++PL                                            + FE F
Sbjct: 1063 MAGISEVNPLPPHYRCPKCRHNEFILDGSYGSGFDLPPKKCPNCDIDMIRDGHDIPFETF 1122

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            L  D    PD D++F  + + +V RY +  +G + V +  T  ++Q K A   V + L+ 
Sbjct: 1123 LGFDGDKSPDIDLNFSGEVQGKVHRYTEELFGKDHVFKAGTISAVQEKTAEGFVRKWLE- 1181

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                                           ++   A+ +   +  ++    G+ R  S 
Sbjct: 1182 -------------------------------KKGMTANSA--EISRLAAGCTGVKRTTSQ 1208

Query: 528  HAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            H  G+V+   D  +     +        SD+  T F+   +    ++K D LG    TL 
Sbjct: 1209 HPGGMVVVPSDYEVYDFTAVQHPADKTESDMITTHFDFHALHDT-ILKLDELGHDVPTLY 1267

Query: 583  QKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKGTLGIFQLESSGM 628
            +   D     G+K+  + +P  D +   L T              + GT GI +  +   
Sbjct: 1268 KHLEDM---TGIKI--ADVPTSDPKVMELFTSTEPLGIKEEDLGVSSGTYGIPEFGTPFT 1322

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
             Q L+  QP    D++ +  L     +          N ++ I      I  ++     +
Sbjct: 1323 LQMLKDAQPKKFSDLLQISGLSHGTDV-------WLGNAQDLISDGTCTISEVIGCRDDI 1375

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEMDKQKERFISGASKNGISKTIAV 747
            ++Y    +    L    +    ++ R+   KK+  E++ K  E       +N + +    
Sbjct: 1376 MVY----LMHQGLEPKLAFKIMEITRKGNAKKLFNEDIYKAFE-------ENNVPQWYIE 1424

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            +      K   Y F K+HAAAY   + +  W K +YP EF +A +T   +N++
Sbjct: 1425 S-----CKKIKYMFPKAHAAAYVTGAVKLCWFKVYYPSEFYSAVLTKHTENID 1472


>gi|218898970|ref|YP_002447381.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus G9842]
 gi|228902321|ref|ZP_04066478.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
 gi|228966763|ref|ZP_04127807.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
            str. T04001]
 gi|218545449|gb|ACK97843.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus G9842]
 gi|228792862|gb|EEM40420.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
            str. T04001]
 gi|228857290|gb|EEN01793.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
          Length = 1433

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 196/918 (21%), Positives = 342/918 (37%), Gaps = 226/918 (24%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHLTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  E--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--EVRLA 324
            E  A E  V   ++ + ++    P+                +++L    + G   E R  
Sbjct: 782  EDKAKEVVVTNTQKVASLIGDVRPV----------------KDDLYTPKIEGADDETRDM 825

Query: 325  QGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
               +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG  RGS
Sbjct: 826  SYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRGS 884

Query: 381  GAGSVTAYALTITDIDPL-----------------------------------------R 399
               S  A  + IT+++PL                                          
Sbjct: 885  VGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKDCPTCNVAYVKDG 944

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K A  
Sbjct: 945  HDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEKTA-- 1002

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                     Y  V    K   ND  H ++++              +  +DRL+       
Sbjct: 1003 ---------YGYV----KGYAND--HNLTIR--------------NAEIDRLV---AGCT 1030

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKA 566
            G+ R    H  GI++        VP Y D+    P+             T F+   I   
Sbjct: 1031 GVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQFPADSIGAEWRTTHFDFHSIHD- 1081

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT------------- 613
             L+K D LG    T+++   D        +D   IP DD E   + +             
Sbjct: 1082 NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPETLGVTEEQIN 1136

Query: 614  -TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNRKNGK 668
               GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN      
Sbjct: 1137 CKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGTCTLS 1196

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM-DK 727
            E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE  D 
Sbjct: 1197 EVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEEWEDD 1239

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             K   + G   +   K               Y F K+HAAAY +++ + A+ K H+ + F
Sbjct: 1240 MKGNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHFALLF 1286

Query: 788  LAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN---------------- 822
             AA  T+  D  +VE + K     R       Q  +   P   +                
Sbjct: 1287 YAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCERGY 1346

Query: 823  ---------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                     +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R  
Sbjct: 1347 SFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR-- 1404

Query: 874  SKKLNRRVLESLVFAGAL 891
              K+++ ++E L   G L
Sbjct: 1405 -SKVSKTIIEYLDSQGCL 1421


>gi|296451302|ref|ZP_06893042.1| DNA polymerase III PolC [Clostridium difficile NAP08]
 gi|296880346|ref|ZP_06904309.1| DNA polymerase III PolC [Clostridium difficile NAP07]
 gi|296259908|gb|EFH06763.1| DNA polymerase III PolC [Clostridium difficile NAP08]
 gi|296428587|gb|EFH14471.1| DNA polymerase III PolC [Clostridium difficile NAP07]
          Length = 1432

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 186/916 (20%), Positives = 340/916 (37%), Gaps = 224/916 (24%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I L+   + G + L +++S  ++ +   ++ RI  S L E   EGLI+ +   +G + +A
Sbjct: 608  ITLIAKNSVGIKNLYKIISDAHV-NHFFRAPRILRSVLNEY-KEGLIIGSACEAGVVFQA 665

Query: 159  FFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
               N S    K+++             +R  ++    +  +  RE   +++  A      
Sbjct: 666  VKKNVSDEEMKKIIDLYDYIEVMPIDNNRFMIDKGEVKDEEELRELNRKLIDTAKKFNKI 725

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
             VAT +  FL     + H+ ++          K     T  H+ +   EM+  FS L E 
Sbjct: 726  PVATGDVHFL-----DKHEAILRKVLKYSQGFKVDEEETYLHF-RTTDEMLEEFSYLGEE 779

Query: 271  L------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
            L      EN+  IA     I  +     P  IE    D++  E    + K + G  +   
Sbjct: 780  LAYEVVVENSNLIADMVEDIKPIPDDTYPPIIEGS--DVELREMCYKKAKRIYGDPI--- 834

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                      +  ++RLD ELN I    ++  ++I    +  +  +   VG  RGS   S
Sbjct: 835  ---------PEIVQKRLDRELNSIISNGYAVMYIIAQKLVAKSLSDGYLVG-SRGSVGSS 884

Query: 385  VTAYALTITDIDPL-----------RFSLL------------------------------ 403
              A    IT+++PL           ++S                                
Sbjct: 885  FAATMSDITEVNPLPAHYICENEDCKYSFFYEIGEWGSGVDLPDKDCPKCGRKLAKNGHD 944

Query: 404  --FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
              FE FL  +    PD D++F  + +  + +Y +  +G   V +  T G++  K A    
Sbjct: 945  IPFEVFLGFEGDKEPDIDLNFSGNYQPTIHKYTEELFGEGYVYRAGTIGTVAEKTAF--- 1001

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            G A +                                 E  ++ P+ + +L +S    G+
Sbjct: 1002 GYARKY------------------------------VEENNISVPNAE-VLRLSNGCTGV 1030

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGL 568
             R +  H  G+++        +P Y+DV    P+             T F+   I    +
Sbjct: 1031 KRTSGQHPGGVMV--------IPDYKDVYDFTPIQYPANDTSCGVITTHFDYHSI-SGRI 1081

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK------------- 615
            +K D LG    T+++   D        ++++ IP DD ET  L T+              
Sbjct: 1082 LKLDILGHDGPTIIRMLEDMTG-----INITEIPLDDKETMSLFTSTEALGVTPEEINCP 1136

Query: 616  -GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
             G L + +  +  +RQ L   +P    +++ +  L       ++ V N +   +E IV +
Sbjct: 1137 IGCLAVPEFGTKFVRQMLLDTKPTTFAELVRISGLSHG---TDVWVNNAQDLVREDIVGL 1193

Query: 675  HPLIDPMLKETQGVIIYQEQVMQ---IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
                       + VI  ++ +M       L    S +  + +R+  GK +K E       
Sbjct: 1194 -----------KDVISTRDDIMNYLIFKGLPPKMSFTIMESVRK--GKGLKPE------- 1233

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
             I+   KN + +    +      K   Y F K+HA AY + S++ A+ K HYP  F A  
Sbjct: 1234 HIAEMKKNNVPEWYIGS-----CKKIKYMFPKAHAVAYVMTSFRIAYCKVHYPEAFYATY 1288

Query: 792  MTLEMDN----------------VEKIKKFCQDARQ-----------------FNIQIMP 818
             T ++++                + +I+    DA                     I+++P
Sbjct: 1289 FTTKVEDFDADLIVKGLDAIKSKINEIESLGNDATTKEKGMLTVLEVALEMYARGIKLLP 1348

Query: 819  PSV-NTPCVDF-KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
              +  +   +F  VG+  +   +AAI+G+G   A +I     +  F S ED   R    K
Sbjct: 1349 VDIYKSDATEFIIVGEKTLLPPMAAIQGLGGNAAINIQTERKNGEFISKEDLRKRT---K 1405

Query: 877  LNRRVLESLVFAGALD 892
            +++ V+E+L   G+L+
Sbjct: 1406 ISKTVIETLTNHGSLE 1421


>gi|255655317|ref|ZP_05400726.1| DNA polymerase III PolC-type [Clostridium difficile QCD-23m63]
          Length = 1432

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 186/916 (20%), Positives = 340/916 (37%), Gaps = 224/916 (24%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I L+   + G + L +++S  ++ +   ++ RI  S L E   EGLI+ +   +G + +A
Sbjct: 608  ITLIAKNSVGIKNLYKIISDAHV-NHFFRAPRILRSVLNEY-KEGLIIGSACEAGVVFQA 665

Query: 159  FFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
               N S    K+++             +R  ++    +  +  RE   +++  A      
Sbjct: 666  VKKNVSDEEMKKIIDLYDYIEVMPIDNNRFMIDKGEVKDEEELRELNRKLIDTAKKFNKI 725

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
             VAT +  FL     + H+ ++          K     T  H+ +   EM+  FS L E 
Sbjct: 726  PVATGDVHFL-----DKHEAILRKVLKYSQGFKVDEEETYLHF-RTTDEMLEEFSYLGEE 779

Query: 271  L------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
            L      EN+  IA     I  +     P  IE    D++  E    + K + G  +   
Sbjct: 780  LAYEVVVENSNLIADMVEDIKPIPDDTYPPIIEGS--DVELREMCYKKAKRIYGDPI--- 834

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                      +  ++RLD ELN I    ++  ++I    +  +  +   VG  RGS   S
Sbjct: 835  ---------PEIVQKRLDRELNSIISNGYAVMYIIAQKLVAKSLSDGYLVG-SRGSVGSS 884

Query: 385  VTAYALTITDIDPL-----------RFSLL------------------------------ 403
              A    IT+++PL           ++S                                
Sbjct: 885  FAATMSDITEVNPLPAHYICENEDCKYSFFYEIGEWGSGVDLPDKDCPKCGRKLAKNGHD 944

Query: 404  --FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
              FE FL  +    PD D++F  + +  + +Y +  +G   V +  T G++  K A    
Sbjct: 945  IPFEVFLGFEGDKEPDIDLNFSGNYQPTIHKYTEELFGEGYVYRAGTIGTVAEKTAF--- 1001

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            G A +                                 E  ++ P+ + +L +S    G+
Sbjct: 1002 GYARKY------------------------------VEENNISVPNAE-VLRLSNGCTGV 1030

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGL 568
             R +  H  G+++        +P Y+DV    P+             T F+   I    +
Sbjct: 1031 KRTSGQHPGGVMV--------IPDYKDVYDFTPIQYPANDTSCGVITTHFDYHSI-SGRI 1081

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK------------- 615
            +K D LG    T+++   D        ++++ IP DD ET  L T+              
Sbjct: 1082 LKLDILGHDGPTIIRMLEDMTG-----INITEIPLDDKETMSLFTSTEALGVTPEEINCP 1136

Query: 616  -GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
             G L + +  +  +RQ L   +P    +++ +  L       ++ V N +   +E IV +
Sbjct: 1137 IGCLAVPEFGTKFVRQMLLDTKPTTFAELVRISGLSHG---TDVWVNNAQDLVREDIVGL 1193

Query: 675  HPLIDPMLKETQGVIIYQEQVMQ---IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
                       + VI  ++ +M       L    S +  + +R+  GK +K E       
Sbjct: 1194 -----------KDVISTRDDIMNYLIFKGLPPKMSFTIMESVRK--GKGLKPE------- 1233

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
             I+   KN + +    +      K   Y F K+HA AY + S++ A+ K HYP  F A  
Sbjct: 1234 HIAEMKKNNVPEWYIGS-----CKKIKYMFPKAHAVAYVMTSFRIAYCKVHYPEAFYATY 1288

Query: 792  MTLEMDN----------------VEKIKKFCQDARQ-----------------FNIQIMP 818
             T ++++                + +I+    DA                     I+++P
Sbjct: 1289 FTTKVEDFDADLIVKGLDAIKSKINEIESLGNDATTKEKGMLTVLEVALEMYARGIKLLP 1348

Query: 819  PSV-NTPCVDF-KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
              +  +   +F  VG+  +   +AAI+G+G   A +I     +  F S ED   R    K
Sbjct: 1349 VDIYKSDATEFIIVGEKTLLPPMAAIQGLGGNAAINIQTERKNGEFISKEDLRKRT---K 1405

Query: 877  LNRRVLESLVFAGALD 892
            +++ V+E+L   G+L+
Sbjct: 1406 ISKTVIETLTNHGSLE 1421


>gi|228954094|ref|ZP_04116123.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar kurstaki
            str. T03a001]
 gi|228805660|gb|EEM52250.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar kurstaki
            str. T03a001]
          Length = 1433

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 198/921 (21%), Positives = 342/921 (37%), Gaps = 232/921 (25%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
            E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 782  EDKAKEVVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321  VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822  TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S  A  + IT+++PL                                      
Sbjct: 881  SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPACNIPY 940

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K
Sbjct: 941  VKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEK 1000

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A           Y  V                 +  A+D       + +  +DRL+   
Sbjct: 1001 TA-----------YGYV-----------------KGYANDHNL---TIRNAEIDRLV--- 1026

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GI++        VP Y D+    P+             T F+   
Sbjct: 1027 AGCTGVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQYPADSIGAEWRTTHFDFHS 1078

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    L+K D LG    T+++   D        +D   IP DD E   + +         
Sbjct: 1079 IHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTE 1132

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNR 664
                   GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN  
Sbjct: 1133 EQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGT 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE
Sbjct: 1193 CTLSEVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEE 1235

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
             ++          KN       ++      K   Y F K+HAAAY +++ + A+ K H+ 
Sbjct: 1236 WEED--------MKNNNVPDWYIDS----CKKIKYMFPKAHAAAYVLMAVRIAYFKVHFA 1283

Query: 785  VEFLAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------- 822
            + F AA  T+  D  +VE + K     R       Q  +   P   +             
Sbjct: 1284 LLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCE 1343

Query: 823  ------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
                        +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED   
Sbjct: 1344 RGYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQ 1403

Query: 871  RVDSKKLNRRVLESLVFAGAL 891
            R    K+++ ++E L   G L
Sbjct: 1404 R---SKVSKTIIEYLDSQGCL 1421


>gi|227486439|ref|ZP_03916755.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235620|gb|EEI85635.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
          Length = 1463

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 186/928 (20%), Positives = 345/928 (37%), Gaps = 213/928 (22%)

Query: 82   NLKMTNQGKTPFPTVP----SIVLLVSTAEGYQRLIELVS--RMYLLDQGKQSVRICLSW 135
            NL   N+ KT +P       S +       G + L +L+S  RM  +  G+   R  +S 
Sbjct: 617  NLSKINRLKTNYPKAKHETFSALAFAKDKTGLKNLYKLISESRMNYMANGE--ARTPMSV 674

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--------KKLFGDRLYVNLQ 187
            L++   EGL++ TGG+ G +      + S++  K++L            +F D++     
Sbjct: 675  LEKY-REGLVLGTGGAEGMLFEYILGDRSEMQIKKVLDLFDFYQVEPVSMFLDKVESGKI 733

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                  +    +++         + AT    +L   DY+  +VL     S    +++RP 
Sbjct: 734  DSLAQVKEINQKIIDFGEERGKLVAATGGVRYLDPGDYKLRNVLKK--GSFFFYKENRPL 791

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +YL+   EM+  FS L +      E+  R            P+ I    +DI+   
Sbjct: 792  ----YYLRTTDEMLGEFSYLGDT--KAYELVIRN-----------PKKIVAGLEDIRPIP 834

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVA 361
                  K +AG E  L      K +        +  + RLD EL+ I    ++  ++I  
Sbjct: 835  HGTFPPK-IAGSEEMLRDTCFKKAHEIYGDPLPKIVQDRLDRELHSIISNGYAVLYIIAQ 893

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------- 399
              ++ + ++   VG  RGS   S  A    IT+++PL                       
Sbjct: 894  KLVKKSNEDGYLVG-SRGSVGSSFAATMADITEVNPLSPHYICPSCKHSEFFEEDLLGSG 952

Query: 400  -------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                ++ FE FL  +    PD D++F  + +  + +Y +  +G 
Sbjct: 953  IDYPDKDCPVCGTPMHKDGHNIPFEVFLGFEGDKEPDIDLNFAGEYQPTIHKYTEVLFGE 1012

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
             +V +  T G +Q   A   + +     Y + + L                         
Sbjct: 1013 GKVFRAGTIGKIQDNTAFGYIKK-----YMEENNL------------------------- 1042

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPV 555
              L +  V +L    + L+ + R    H  G+++   D  +  + P+     D  S    
Sbjct: 1043 -NLTNAQVRKL---QRGLKDVKRSTGQHPGGLIVVPDDIEVFDICPIQYPADDPASGNKT 1098

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T F  + +E+  L+K D LG    ++++   D      +K+ +     DD +   + +  
Sbjct: 1099 THFPYRVMEET-LLKLDLLGHDVPSVIRHLQDLTGTDPLKIKM-----DDKDVMKIFSCT 1152

Query: 616  --------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI- 658
                          GTLGI +  ++ +R  L+   P    ++  +  L     +  +N  
Sbjct: 1153 EPLKIKHDFSNNDIGTLGIPEFGTNFVRGMLKDTYPKKFSEMARISGLSHGTNVWLNNAQ 1212

Query: 659  -VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
             ++ +N     E I +   +++ +++E    +  ++  M + ++  G  LSE        
Sbjct: 1213 DIIKSNTAGFNEIISTRDDIMNALIQEG---LDKKKSFMIMEKVRKGKGLSE-------- 1261

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
                 EE+D  +E        NG+      +  ++      Y F K+HA AY ++SY+ A
Sbjct: 1262 -----EEIDYMRE--------NGVKDWYIDSCLKIA-----YLFPKAHAVAYCLMSYRIA 1303

Query: 778  WMKTHYPVEFLAA---------------------SMTL----EMDNVEK-------IKKF 805
            + K +YP  F A+                      M L    EM N+ K       + + 
Sbjct: 1304 YYKVYYPEAFYASYFSSKLGDFTYSTIISGLESVQMALNAYKEMFNISKRDQDLRTVLEV 1363

Query: 806  CQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
             ++     I+I    +  +    F + D  I   LAA+  V    A+ I+E  A   F S
Sbjct: 1364 AEEMHAREIKISKADIYESDATKFLIKDGAILPPLAAVDDVSEAMAKDIVEERAKGDFIS 1423

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +ED  SR     +N+  L+SL   G ++
Sbjct: 1424 IEDLTSRT---SVNKNALKSLKDLGIIE 1448


>gi|228940906|ref|ZP_04103465.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar berliner
            ATCC 10792]
 gi|228973835|ref|ZP_04134411.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            thuringiensis str. T01001]
 gi|228980424|ref|ZP_04140734.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
 gi|228779244|gb|EEM27501.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
 gi|228785860|gb|EEM33863.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            thuringiensis str. T01001]
 gi|228818742|gb|EEM64808.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar berliner
            ATCC 10792]
 gi|326941584|gb|AEA17480.1| DNA polymerase III PolC [Bacillus thuringiensis serovar chinensis
            CT-43]
          Length = 1433

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 196/918 (21%), Positives = 342/918 (37%), Gaps = 226/918 (24%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269  E--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--EVRLA 324
            E  A E  V   ++ + ++    P+                +++L    + G   E R  
Sbjct: 782  EDKAKEVVVTNTQKVASLIGDVRPV----------------KDDLYTPKIEGADDETRDM 825

Query: 325  QGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
               +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG  RGS
Sbjct: 826  SYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRGS 884

Query: 381  GAGSVTAYALTITDIDPL-----------------------------------------R 399
               S  A  + IT+++PL                                          
Sbjct: 885  VGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKDCPTCNVAYVKDG 944

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K A  
Sbjct: 945  HDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEKTA-- 1002

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                     Y  V    K   ND  H ++++              +  +DRL+       
Sbjct: 1003 ---------YGYV----KGYAND--HNLTIR--------------NAEIDRLV---AGCT 1030

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKA 566
            G+ R    H  GI++        VP Y D+    P+             T F+   I   
Sbjct: 1031 GVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQFPADSIGAEWRTTHFDFHSIHD- 1081

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT------------- 613
             L+K D LG    T+++   D        +D   IP DD E   + +             
Sbjct: 1082 NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPETLGVTEEQIN 1136

Query: 614  -TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNRKNGK 668
               GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN      
Sbjct: 1137 CKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGTCTLS 1196

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM-DK 727
            E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE  D 
Sbjct: 1197 EVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEEWEDD 1239

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             K   + G   +   K               Y F K+HAAAY +++ + A+ K H+ + F
Sbjct: 1240 MKGNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHFALLF 1286

Query: 788  LAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN---------------- 822
             AA  T+  D  +VE + K     R       Q  +   P   +                
Sbjct: 1287 YAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCERGY 1346

Query: 823  ---------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                     +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R  
Sbjct: 1347 SFQKVDLYRSHATEFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR-- 1404

Query: 874  SKKLNRRVLESLVFAGAL 891
              K+++ ++E L   G L
Sbjct: 1405 -SKVSKTIIEYLDSQGCL 1421


>gi|212639526|ref|YP_002316046.1| DNA polymerase III PolC [Anoxybacillus flavithermus WK1]
 gi|212561006|gb|ACJ34061.1| DNA polymerase III, alpha subunit (gram-positive type) [Anoxybacillus
            flavithermus WK1]
          Length = 1430

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 186/911 (20%), Positives = 332/911 (36%), Gaps = 219/911 (24%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             LLV    G + L +LVS  ++ +   +  RI  S LQ+   EG+++ +G   G +  A 
Sbjct: 608  TLLVQNEVGLKNLFKLVSFSHV-NYFYRVPRIPRSVLQQ-HREGILVGSGCDKGELFEAM 665

Query: 160  FFNSSQVAEK--RLLTFKKLFGDRLY---VNLQRHRGYDRYRE--SQVVQLAYTHELPLV 212
                 + AE       F ++    +Y   + ++  R     +E  + +VQL     +P+V
Sbjct: 666  MQKGVEEAEAIASFYDFLEVHPPEVYAPLIEMEYVRDEAALKEIITNIVQLGDRLGIPVV 725

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--A 270
            AT N  ++++ED     +L+   HS            P+ + +  +EM+  FS L E  A
Sbjct: 726  ATGNVHYINQEDKIYRKILI---HSQSGGNPLNRHELPNVHFRTTNEMLESFSFLGEQKA 782

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--EVRLAQGAI 328
             E  V   ++ + ++    PI                ++EL    + G   E+R      
Sbjct: 783  KEIVVTNTKKIADLIGEVKPI----------------KDELYTPKIEGADEEIRRMSYER 826

Query: 329  AKGYHAQDY----RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            AK  +         +RL+ EL  I    F+  +LI    ++ +  +   VG  RGS   S
Sbjct: 827  AKSIYGDPLPDIVEKRLEKELKSIIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSS 885

Query: 385  VTAYALTITDIDPL------------------------------------RFS-----LL 403
              A    IT+++PL                                    R++     + 
Sbjct: 886  FVATMTEITEVNPLPPHYVCPNCKHSEFFDDGSVGSGFDLPDKDCPKCGARYNKDGHDIP 945

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K A      
Sbjct: 946  FETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDNVYRAGTIGTVADKTAY----- 1000

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
                         K   ND                +   +    +DRL   +    G+ R
Sbjct: 1001 ----------GFVKGYIND----------------KNLHVRAAEIDRL---AAGCTGVKR 1031

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GI++        VP Y D+    P+             T F+   I    L+K
Sbjct: 1032 TTGQHPGGIIV--------VPDYMDIYDFTPIQYPADDTESEWRTTHFDFHSIHD-NLLK 1082

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KG 616
             D LG    T+++   D        +D   IP DD E   + ++               G
Sbjct: 1083 LDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSSTESLGVTPEQIMCNTG 1137

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            TLGI +  +  +RQ LE  +P    +++ +  L     +          N +E I S   
Sbjct: 1138 TLGIPEFGTRFVRQMLEETKPKTFSELVQISGLSHGTDV-------WLGNAQELIQSGTC 1190

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK--ERFIS 734
             +  ++     +++Y   + +  +    + + E+    + +  + +EEM K    E +I 
Sbjct: 1191 TLSEVIGCRDDIMVY--LIYRGLEPSLAFKIMESVRKGKGLTPEFEEEMRKHDVPEWYIE 1248

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               K                    Y F K+HAAAY +++ + A+ K H+P+ + A+  T+
Sbjct: 1249 SCKK------------------IKYMFPKAHAAAYVLMAVRIAYFKVHHPLLYYASYFTV 1290

Query: 795  EMDN----------------VEKI--KKFCQDARQFNIQIMPPSVNTPC----------- 825
              ++                +E+I  K     A++ N+  +       C           
Sbjct: 1291 RAEDFDLDVMIQGSAAIRRRIEEIQAKGLDASAKEKNLLTVLEIALEMCERGFSFKHIDL 1350

Query: 826  -----VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                  +F +  + +     AI G+G   A+ I+ A  +  F S ED   R    K+++ 
Sbjct: 1351 YRSQATEFIIDGHSLIPPFNAIPGLGENVAKSIVRAREEGEFLSKEDLQQR---GKVSKT 1407

Query: 881  VLESLVFAGAL 891
            +LE L   G L
Sbjct: 1408 ILEYLESRGCL 1418


>gi|56419793|ref|YP_147111.1| DNA polymerase III PolC [Geobacillus kaustophilus HTA426]
 gi|56379635|dbj|BAD75543.1| DNA-directed DNA polymerase III alpha chain [Geobacillus kaustophilus
            HTA426]
          Length = 1444

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 168/810 (20%), Positives = 295/810 (36%), Gaps = 216/810 (26%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V L    ++P+VAT N  +L+ ED     +L+   HS   +        PD Y +  +E
Sbjct: 727  IVALGEKLDIPVVATGNVHYLNPEDKIYRKILI---HSQGGANPLNRHELPDVYFRTTNE 783

Query: 260  MVSIFSDL-PE-----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            M+  FS L PE      ++NT +IA     +  +   +    IE   ++I+  E +  R 
Sbjct: 784  MLDCFSFLGPEKAKEIVVDNTQKIASLIGDVKPIKDELYTPRIEGADEEIR--EMSYRRA 841

Query: 314  KAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            K + G  + +L +             +RL+ EL  I    F+  +LI    ++ +  +  
Sbjct: 842  KEIYGDPLPKLVE-------------ERLEKELKSIIGHGFAVIYLISHKLVKKSLDDGY 888

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLR--------------------------------- 399
             VG  RGS   S  A    IT+++PL                                  
Sbjct: 889  LVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPNCKHSEFFNDGSVGSGFDLPDKNCPRC 947

Query: 400  --------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                      + FE FL      +PD D++F  + +     Y +  +G + V +  T G+
Sbjct: 948  GTKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDNVYRAGTIGT 1007

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            +  K A           Y  V                 +A A D    E R A+  +DRL
Sbjct: 1008 VADKTA-----------YGFV-----------------KAYASDHNL-ELRGAE--IDRL 1036

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQF 558
               +    G+ R    H  GI++        VP Y ++    P+             T F
Sbjct: 1037 ---AAGCTGVKRTTGQHPGGIIV--------VPDYMEIYDFTPIQYPADDTSSEWRTTHF 1085

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--- 615
            +   I    L+K D LG    T+++   D        +D   IP DD +   + ++    
Sbjct: 1086 DFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPDVMGIFSSTEPL 1139

Query: 616  -----------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
                       GT+GI +  +  +RQ LE  +P    +++ +  L     +         
Sbjct: 1140 GVTPEQIMCNVGTIGIPEFGTRFVRQMLEETRPKTFSELVQISGLSHGTDV-------WL 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             N +E I +    +  ++     +++Y   + +  +    + + E+    + +  + + E
Sbjct: 1193 GNAQELIQNGTCTLSEVIGCRDDIMVY--LIYRGLEPSLAFKIMESVRKGKGLTPEFEAE 1250

Query: 725  MDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            M K    E +I    K                    Y F K+HAAAY +++ + A+ K H
Sbjct: 1251 MRKHDVPEWYIDSCKK------------------IKYMFPKAHAAAYVLMAVRIAYFKVH 1292

Query: 783  YPVEFLAASMTLEMDN----------------VEKIK---------------------KF 805
            +P+ + A+  T+  ++                +E+I                      + 
Sbjct: 1293 HPLLYYASYFTVRAEDFDLDAMIKGSAAIRKRIEEINAKGIQATAKEKSLLTVLEVALEM 1352

Query: 806  CQDARQF-NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            C+    F NI +      +   +F +  N +     AI G+GT  A+ I+ A  +  F S
Sbjct: 1353 CERGFSFKNIDLY----RSQATEFVIDGNSLIPPFNAIPGLGTNVAQAIVRAREEGEFLS 1408

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             ED   R    KL++ +LE L   G LD  
Sbjct: 1409 KEDLQQR---GKLSKTLLEYLESRGCLDSL 1435


>gi|261419458|ref|YP_003253140.1| DNA polymerase III subunit chi [Geobacillus sp. Y412MC61]
 gi|319766273|ref|YP_004131774.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC52]
 gi|261375915|gb|ACX78658.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC61]
 gi|317111139|gb|ADU93631.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC52]
          Length = 1444

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 168/810 (20%), Positives = 295/810 (36%), Gaps = 216/810 (26%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V L    ++P+VAT N  +L+ ED     +L+   HS   +        PD Y +  +E
Sbjct: 727  IVALGEKLDIPVVATGNVHYLNPEDKIYRKILI---HSQGGANPLNRHELPDVYFRTTNE 783

Query: 260  MVSIFSDL-PE-----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            M+  FS L PE      ++NT +IA     +  +   +    IE   ++I+  E +  R 
Sbjct: 784  MLDCFSFLGPEKAKEIVVDNTQKIASLIGDVKPIKDELYTPRIEGADEEIR--EMSYRRA 841

Query: 314  KAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            K + G  + +L +             +RL+ EL  I    F+  +LI    ++ +  +  
Sbjct: 842  KEIYGDPLPKLVE-------------ERLEKELKSIIGHGFAVIYLISHKLVKKSLDDGY 888

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPL---------------------------------- 398
             VG  RGS   S  A    IT+++PL                                  
Sbjct: 889  LVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPNCKHSEFFNDGSVGSGFDLPDKNCPRC 947

Query: 399  -------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                      + FE FL      +PD D++F  + +     Y +  +G + V +  T G+
Sbjct: 948  GTKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDNVYRAGTIGT 1007

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            +  K A           Y  V                 +A A D    E R A+  +DRL
Sbjct: 1008 VADKTA-----------YGFV-----------------KAYASDHNL-ELRGAE--IDRL 1036

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQF 558
               +    G+ R    H  GI++        VP Y ++    P+             T F
Sbjct: 1037 ---AAGCTGVKRTTGQHPGGIIV--------VPDYMEIYDFTPIQYPADDTSSEWRTTHF 1085

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--- 615
            +   I    L+K D LG    T+++   D        +D   IP DD +   + ++    
Sbjct: 1086 DFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPDVMGIFSSTEPL 1139

Query: 616  -----------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
                       GT+GI +  +  +RQ LE  +P    +++ +  L     +         
Sbjct: 1140 GVTPEQIMCNVGTIGIPEFGTRFVRQMLEETRPKTFSELVQISGLSHGTDV-------WL 1192

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             N +E I +    +  ++     +++Y   + +  +    + + E+    + +  + + E
Sbjct: 1193 GNAQELIQNGTCTLSEVIGCRDDIMVY--LIYRGLEPSLAFKIMESVRKGKGLTPEFEAE 1250

Query: 725  MDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            M K    E +I    K                    Y F K+HAAAY +++ + A+ K H
Sbjct: 1251 MRKHDVPEWYIDSCKK------------------IKYMFPKAHAAAYVLMAVRIAYFKVH 1292

Query: 783  YPVEFLAASMTLEMDN----------------VEKIK---------------------KF 805
            +P+ + A+  T+  ++                +E+I                      + 
Sbjct: 1293 HPLLYYASYFTVRAEDFDLDAMIKGSAAIRKRIEEINAKGIQATAKEKSLLTVLEVALEM 1352

Query: 806  CQDARQF-NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            C+    F NI +      +   +F +  N +     AI G+GT  A+ I+ A  +  F S
Sbjct: 1353 CERGFSFKNIDLY----RSQATEFVIDGNSLIPPFNAIPGLGTNVAQAIVRAREEGEFLS 1408

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             ED   R    KL++ +LE L   G LD  
Sbjct: 1409 KEDLQQR---GKLSKTLLEYLESRGCLDSL 1435


>gi|154686075|ref|YP_001421236.1| DNA polymerase III PolC [Bacillus amyloliquefaciens FZB42]
 gi|154351926|gb|ABS74005.1| PolC [Bacillus amyloliquefaciens FZB42]
          Length = 1437

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 166/804 (20%), Positives = 292/804 (36%), Gaps = 200/804 (24%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKN 256
            + + +L      P+VAT N  +L++ED     +L++    +  +++ + P+V    + + 
Sbjct: 718  ANITKLGEKLNKPVVATGNVHYLNDEDKIYRKILISSQGGANPLNRHELPKV----HFRT 773

Query: 257  RSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE--EENELR 312
              EM+  FS L   +A E  V+  ++ + ++    PI       + D   +E  E +  R
Sbjct: 774  TDEMLEAFSFLGAEKAKEIVVDNTQKVASMIDEIKPIKDDLYTPKIDGADEEIREMSYQR 833

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             +++ G E+             +    R++ EL  I    F+  +LI    ++ +  +  
Sbjct: 834  ARSIYGEEL------------PEIVEARIEKELKSIIGHGFAVIYLISHKLVKRSLDDGY 881

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPL---------RFS---------------------- 401
             VG  RGS   S+ A    IT+++PL         R+S                      
Sbjct: 882  LVG-SRGSVGSSLVATLTEITEVNPLAPHYVCPSCRYSEFFNDGSVGSGFDLPDKSCPSC 940

Query: 402  ----------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                      + FE FL      +PD D++F  + +     Y +  +G + V +  T G+
Sbjct: 941  GTPLKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHNYTKVLFGEDNVYRAGTIGT 1000

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            +  K A           Y  V                 +  A D       +    +DRL
Sbjct: 1001 VAEKTA-----------YGYV-----------------KGYAGDHNLH---MRGAEIDRL 1029

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQF 558
            +   Q   G+ R    H  GI++        VP Y D+    P+             T F
Sbjct: 1030 V---QGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFSPIQFPADATGSEWKTTHF 1078

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL------ 612
            +   I    L+K D LG    T+++   D        +D   IP DD E   +       
Sbjct: 1079 DFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFQGTESL 1132

Query: 613  --------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
                       GTLGI +  +  +RQ LE  +P    +++ +  L     +         
Sbjct: 1133 GVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHGTDV-------WL 1185

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             N +E       LI     E   VI  ++ +M +  +  G        L  ++  KI E 
Sbjct: 1186 GNAQE-------LIHNNTCELSEVIGCRDDIM-VYLIYQG--------LEPSLAFKIMEF 1229

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + K K   ++   +  + K    N +    K   Y F K+HAAAY +++ + A+ K H+ 
Sbjct: 1230 VRKGKG--LTPEWEEEMKKNNVPNWYIDSCKKIKYMFPKAHAAAYVLMAVRIAYFKVHHA 1287

Query: 785  VEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVNTPCV--------- 826
            + + AA  T+  D+ +          I+    D     +   P   N   V         
Sbjct: 1288 LLYYAAYFTVRADDFDIDTMIKGSTAIRAVMDDISSKGLDASPKEKNLLTVLELALEMCE 1347

Query: 827  ----------------DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
                            +F +  N +     +I G+GT  A +I++A  +  F S ED   
Sbjct: 1348 RGYSFQKVDLYRSSASEFIIDGNSLIPPFNSIPGLGTNAALNIVKARKEGEFLSKEDLQK 1407

Query: 871  RVDSKKLNRRVLESLVFAGALDCF 894
            R    K+++ +LE L   G L+  
Sbjct: 1408 R---GKVSKTILEYLDRHGCLESL 1428


>gi|228909642|ref|ZP_04073465.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
 gi|228849931|gb|EEM94762.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
          Length = 1435

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 196/918 (21%), Positives = 342/918 (37%), Gaps = 226/918 (24%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 609  PSHLTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 666

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 667  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 726

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 727  KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 783

Query: 269  E--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--EVRLA 324
            E  A E  V   ++ + ++    P+                +++L    + G   E R  
Sbjct: 784  EDKAKEVVVTNTQKVASLIGDVRPV----------------KDDLYTPKIEGADDETRDM 827

Query: 325  QGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
               +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG  RGS
Sbjct: 828  SYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRGS 886

Query: 381  GAGSVTAYALTITDIDPL-----------------------------------------R 399
               S  A  + IT+++PL                                          
Sbjct: 887  VGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKDCPTCNVAYVKDG 946

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K A  
Sbjct: 947  HDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEKTA-- 1004

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                     Y  V    K   ND  H ++++              +  +DRL+       
Sbjct: 1005 ---------YGYV----KGYAND--HNLTIR--------------NAEIDRLV---AGCT 1032

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKA 566
            G+ R    H  GI++        VP Y D+    P+             T F+   I   
Sbjct: 1033 GVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQFPADSIGAEWRTTHFDFHSIHD- 1083

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT------------- 613
             L+K D LG    T+++   D        +D   IP DD E   + +             
Sbjct: 1084 NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPETLGVTEEQIN 1138

Query: 614  -TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNRKNGK 668
               GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN      
Sbjct: 1139 CKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGTCTLS 1198

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM-DK 727
            E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE  D 
Sbjct: 1199 EVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEEWEDD 1241

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             K   + G   +   K               Y F K+HAAAY +++ + A+ K H+ + F
Sbjct: 1242 MKGNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHFALLF 1288

Query: 788  LAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN---------------- 822
             AA  T+  D  +VE + K     R       Q  +   P   +                
Sbjct: 1289 YAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCERGY 1348

Query: 823  ---------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                     +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R  
Sbjct: 1349 SFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR-- 1406

Query: 874  SKKLNRRVLESLVFAGAL 891
              K+++ ++E L   G L
Sbjct: 1407 -SKVSKTIIEYLDSQGCL 1423


>gi|218133709|ref|ZP_03462513.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC
            43243]
 gi|217991084|gb|EEC57090.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC
            43243]
          Length = 1403

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 194/950 (20%), Positives = 344/950 (36%), Gaps = 220/950 (23%)

Query: 73   CQLDIDMQD--NLKMTNQGKTP-------FPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            C+L + M+D   L   N+  TP        PT   I+LL S+ +G   L  L+S  ++  
Sbjct: 532  CEL-LKMRDILTLDQLNEAGTPDVDAIRKMPTY-HIILLASSEQGRINLYRLISASHITY 589

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KKL 177
               +  RI  S L     +G+I+ +   +G + +A    + +    R++ F      + +
Sbjct: 590  FANRP-RIPKSLLARY-RDGIIVGSACEAGDLFQAVLNGAPEEEIARIVNFYDYLEVQPI 647

Query: 178  FGDRLYVNLQRHRGYDRYR----ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
              +R  ++       D         +++ L      P+VAT +  F++ ED         
Sbjct: 648  GNNRFMIDSDSCWVKDEQDLIDLNRKIIHLGEVFNKPVVATGDVHFMNPED--------E 699

Query: 234  VAHSTVVSQK---DRPRVTPDHYLKNRSEMVSIFS--DLPEALE----NTVEIARRCSFI 284
            V    V++QK   D  R  P  YL+   EM++ F   D  +A E    NT  I + C  I
Sbjct: 700  VYRRIVMTQKGFDDADRQAP-LYLRTTEEMLAEFEYLDADKAYEIVVTNTDRIMKMCEKI 758

Query: 285  LQVHAPILPRFIE---KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
              V     P  IE   +   DI     +E+    +  +                   +RL
Sbjct: 759  EPVRPDKRPPVIENSDQTLRDICYNRAHEMYGPTLPTV-----------------VEERL 801

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-- 399
            + EL  I    +S  ++I    +  +  +   VG  RGS   S  A    IT+++PL   
Sbjct: 802  ERELKSIISNGYSVMYIIAQKLVWKSNDDGYLVG-SRGSVGSSFAATMAGITEVNPLSPH 860

Query: 400  -------------------------------------------FSLLFERFLNPDRMSMP 416
                                                       F + FE FL       P
Sbjct: 861  YLCPNCYYVDFDSEDVRKFSGAAGCDMPDKICPVCGKKLRKEGFDIPFETFLGFKGNKEP 920

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQ 471
            D D++F  + + +   Y +  +G  +  +  T G++  K A   V      ++ ++ ++ 
Sbjct: 921  DIDLNFSNEYQSKAHAYTEVIFGKGQTFKAGTIGTVAEKTAYGYVKGYFEKQSEKLGHNV 980

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
              R C++                       RLA   VD           + R    H  G
Sbjct: 981  TKRNCEI----------------------ERLAAGCVD-----------IRRTTGQHPGG 1007

Query: 532  IVIGDRPLSQLVPMYRDVR-------SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            IV+   P+ + +  +  ++       S +  T F+   I+   L+K D LG    T+++ 
Sbjct: 1008 IVV--LPIGEEIHTFTPIQHPANKMDSGITTTHFDYHSIDH-NLLKLDILGHLDPTMIR- 1063

Query: 585  SLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
                + Q    +D + IP D  E   L      LGI      G +    G+     +  +
Sbjct: 1064 ----MLQDLTGLDPTEIPLDSPEVMSLFKDTSALGITPDMIGGTKLGALGIPEFGTDFAM 1119

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL--- 701
             ++   +P    ++V          +I  +    D  L   Q +I   +  +  A     
Sbjct: 1120 QMLIDAKPQHFSDLV----------RIAGLAHGTDVWLGNAQTLIAEGKATISTAICTRD 1169

Query: 702  -LSGYSLSEADVLRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFA 757
             +  Y +S    L + +   I E + K K   + ++    + G+      + +    K  
Sbjct: 1170 DIMTYLISMG--LDKELSFTIMESVRKGKGLKDEWLPIMKEAGVP-----DWYIWSCKKI 1222

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQD 808
             Y F K+HAAAY +++++ A+ K  YP+ +  A  ++  D           +K++ + +D
Sbjct: 1223 KYMFPKAHAAAYVMMAWRVAYCKVFYPLAYYCAFFSIRADAFSYNLMCMGRDKLEYYIKD 1282

Query: 809  ARQ-FNIQIMPPSVNTPCVD--------------------------FKVGDNRIYYSLAA 841
             ++  N + + P+      D                          F+V D +I  SL A
Sbjct: 1283 YKERHNAKTLSPTEEATYADMRIVQEFYARGFEFMPIDIFRAKARSFQVIDGKIMPSLKA 1342

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            I G+G   A  I  A+ D  F S EDF +R         +L+S    G+L
Sbjct: 1343 IDGLGEVAAESIEIAARDGAFLSKEDFKTRAKVGDSAVSLLDSFGILGSL 1392


>gi|296163562|ref|ZP_06846301.1| DNA-directed DNA polymerase [Burkholderia sp. Ch1-1]
 gi|295886188|gb|EFG66067.1| DNA-directed DNA polymerase [Burkholderia sp. Ch1-1]
          Length = 372

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 94/184 (51%), Gaps = 9/184 (4%)

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           +DK  +R ++G  + G  K  A +IF+ +  F +Y F +SHAA++A++ Y ++W+K H P
Sbjct: 25  IDKYYDRIVNGMMERGYEKDFAESIFQQIHGFGEYSFPESHAASFALLVYASSWLKCHEP 84

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR------IYYS 838
             FL A +     +     +F QDA++ N++++P  V     +  +  ++      +   
Sbjct: 85  EAFLVAMLNSMPLDFYSASQFIQDAQRHNVKVLPADVTISNWNSVLERHKSASRPAVRLG 144

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
           L+ +KG+    A  I  A A + F S+ D   R    +L+R+ L+ L  A +L     +R
Sbjct: 145 LSLLKGMKDGAAERIEAARAVRQFASVSDLAKRA---QLDRKDLQVLAAANSLSSLAGNR 201

Query: 899 MQLL 902
            + L
Sbjct: 202 REAL 205


>gi|283798089|ref|ZP_06347242.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
 gi|291074233|gb|EFE11597.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
          Length = 1538

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 164/771 (21%), Positives = 277/771 (35%), Gaps = 176/771 (22%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++V+L      P+ AT +  FL  ED     ++MA         KD     P  YL+   
Sbjct: 813  KIVELGERFNKPVCATCDVHFLDPEDEVYRRIIMAGK-----GFKDCDDQAP-LYLRTTE 866

Query: 259  EMVSIF----SDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            EM+  F    SD  E   + NT +IA  C  I    +P+ P     +C  +    +  LR
Sbjct: 867  EMLREFEYLGSDKAEEVVITNTRKIAAMCERI----SPVRP----DKCPPVIPNSDEMLR 918

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYR----QRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            N               A   + +D      +RL+ ELN I    F+  ++I    +  + 
Sbjct: 919  NICYNR----------AHEMYGEDLPKIVVERLERELNSIISNGFAVMYIIAQKLVWKSN 968

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------------- 399
            ++   VG  RGS   S  A    IT+++PL                              
Sbjct: 969  EDGYLVG-SRGSVGSSFVATMSGITEVNPLSPHYYCTNCHFYDFDSEEVKKFSGMAGCDM 1027

Query: 400  ----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                            F + FE FL       PD D++F  + +     Y +  +G  + 
Sbjct: 1028 PDRLCPVCGKPLKKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSRAHDYTEVIFGKGQT 1087

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
             +  T G+L  K A   V +  +    Q  R C++                       R+
Sbjct: 1088 FRAGTIGTLADKTAFGYVKKYYE-ERGQRKRACEI----------------------NRI 1124

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQF 558
                V           G+ R    H  GI++      +    P+     D+ S    T F
Sbjct: 1125 VTGCV-----------GVRRTTGQHPGGIIVLPHGEEIYSFTPVQHPADDMTSKTITTHF 1173

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
            +   I+   L+K D LG    T+++   D      VK     IP D  E   L  +   L
Sbjct: 1174 DYHSIDH-NLLKLDILGHDDPTMIRMLQDLTGLDPVKD----IPLDCKEVMSLFQSTEAL 1228

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK-IVSIHPL 677
            GI   +  G      G+     +  + ++   +P    ++V      +G +  + +   L
Sbjct: 1229 GITPDDIGGCPLGALGVPEFGTDFAMQMLLDTKPKYFSDLVRIAGLAHGTDVWLGNAQTL 1288

Query: 678  IDPMLKETQGVIIYQEQVMQIA---QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            I       Q  I  ++ +M       L  G S +  + +R+  GK +K E +++      
Sbjct: 1289 IQEGKATIQTAICTRDDIMVYLISRGLEEGLSFTIMESVRK--GKGLKPEWEEE------ 1340

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA---- 790
              + +G+      + +    K   Y F K+HAAAY +++++ A+ K  YP+ + AA    
Sbjct: 1341 -MTAHGVP-----DWYIWSCKKIKYMFPKAHAAAYVMMAWRIAYCKVFYPLAYYAAFFSI 1394

Query: 791  -----SMTLEMDNVEKIK------------------------KFCQDARQFNIQIMPPSV 821
                 S  L     EK++                        +  Q+      + MP  +
Sbjct: 1395 RASGFSYELMCQGREKLEYHLADYKKRLDTLSKKEQDTLRDMRIVQEMYARGFEFMPIDI 1454

Query: 822  -NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                  +F++ D ++  SL++I G+G   A  I+ A+ D PF S EDF +R
Sbjct: 1455 YRASARNFQIIDGKLMPSLSSIDGLGEKAADGIVFAAEDGPFLSKEDFINR 1505


>gi|260583917|ref|ZP_05851665.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
            700633]
 gi|260158543|gb|EEW93611.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
            700633]
          Length = 1441

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 158/811 (19%), Positives = 300/811 (36%), Gaps = 225/811 (27%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V+L    ++P+VAT N  +L+ ED    ++L+     T V+   +    PD + +  +E
Sbjct: 725  LVKLGEELDIPVVATGNVHYLNPEDKIYREILL-----TSVNNGQKLNY-PDVHFRTTNE 778

Query: 260  MVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
            M+  F+ L E  A E  V      +  L+V  PI                +++L    + 
Sbjct: 779  MLDEFAFLGEEKAFEVVVTNTHWVNDQLEVIIPI----------------KDDLYTPKIE 822

Query: 318  GLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            G E  + + +  K +        +   +R+D EL  I    FS  +LI    +  + ++ 
Sbjct: 823  GAEDEITKLSYDKAHEWYGEELPEIVEKRIDKELKSIIGNGFSVIYLISQKLVHKSNEDG 882

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLR-------------------------------- 399
              VG  RGS   S+ A    IT+++PL                                 
Sbjct: 883  YLVG-SRGSVGSSLVATLTGITEVNPLAPHYRCPNCCYSEFFDDGSVGSGFDLPEKDCPK 941

Query: 400  ---------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
                       + FE FL      +PD D++F  + + +   Y +  +G + V +  T G
Sbjct: 942  CGTRLAKDGHDIPFETFLGFYGDKVPDIDLNFSGEYQPQAHNYTKVLFGEDYVYRAGTIG 1001

Query: 451  SLQAKAAL-------RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
            ++  K A        RD+G  L+   +++DRL K                          
Sbjct: 1002 TVADKTAFGYVKGYERDLG--LEFRQAEIDRLAK-------------------------- 1033

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------- 555
                            G+ R    H  GI++        +P Y DV    P+        
Sbjct: 1034 -------------GCTGVKRSTGQHPGGIIV--------IPDYMDVYDFTPIQFPADDQN 1072

Query: 556  -----TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
                 T F+   I    ++K D LG    T+++   D        ++   IP DD E   
Sbjct: 1073 AEWKTTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDLSG-----IEPKDIPPDDPEVMK 1126

Query: 611  LL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            +               +  GTLGI +  +  +R  LE  +P    +++ +  L     + 
Sbjct: 1127 IFGGTEVLGVTPEQIDSNTGTLGIPEFGTKFVRGMLEQTKPTTFTELLQISGLSHGTDV- 1185

Query: 657  NIVVYNNRKNGKEKIVSIHPL-IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
                        E+++ +H + +  ++     +++Y    +    + +G +    + +R+
Sbjct: 1186 -------YLGNAEELIRLHGIPLSEVIGCRDDIMVY----LIHKGVENGAAFKIMEGVRK 1234

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
              GK I E+       + +   +N + +    +  ++      Y F K+HAAAY +++ +
Sbjct: 1235 --GKGIPED-------YQAMMRENNVPEWYIESCLKI-----KYMFPKAHAAAYVLMALR 1280

Query: 776  TAWMKTHYPV--------------EFLAASMTLEM--DNVEKIKKFCQDA--RQFNIQIM 817
             AW K H P+              + +A S   EM    +++I+    DA  ++ N+  +
Sbjct: 1281 VAWFKVHKPLLYYCAYFSVRAQDFDIVAMSQGKEMIKQRMKEIRDKGNDASTKEVNLLTV 1340

Query: 818  PPSVNTPC----------------VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
                N  C                V+F +  + +     +I G+G   A  I+EA  ++P
Sbjct: 1341 LELANEMCERGFNFKMVDIEKSDAVNFVIEGDSLIAPFRSIPGLGLNVANKIVEARQEQP 1400

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            F S +D  +R    K+++ +++ +     LD
Sbjct: 1401 FISKKDLATR---GKVSKTLIDYMTENKVLD 1428


>gi|239626437|ref|ZP_04669468.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516583|gb|EEQ56449.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1554

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 159/773 (20%), Positives = 280/773 (36%), Gaps = 180/773 (23%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++V+L       + AT +  FL  +D     ++MA         KD     P  YL+   
Sbjct: 831  KIVELGMQFNKLVCATCDVHFLDPQDEVYRRIIMAGQ-----GFKDSDDQAP-LYLRTTE 884

Query: 259  EMVSIFSDL-PE-----ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEEN 309
            EM+  FS L P+      + NT ++A  C  I  V     P  IE   K    I  +  +
Sbjct: 885  EMIKEFSYLGPDKAHEVVVTNTRKVADMCEKIAPVRPDKCPPVIEDSDKTLTKICYDRAH 944

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            E+  + +  + V                  RL+ EL+ I    F+  ++I    +  + +
Sbjct: 945  EMYGENLPKIVV-----------------DRLERELHSIITNGFAVMYIIAQKLVWKSNE 987

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------ 399
            +   VG  RGS   S  A    IT+++PL                               
Sbjct: 988  DGYLVG-SRGSVGSSFVATMSGITEVNPLSPHYHCPNCRYYDFDSEEVRKFSGMAGCDMP 1046

Query: 400  ---------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                           F + FE FL       PD D++F  + + +   Y +  +G  +  
Sbjct: 1047 DKSCPVCGTPLEKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHDYTEVIFGKGQTF 1106

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G+L  K A   V +  +                                R  R  
Sbjct: 1107 RAGTIGTLADKTAFGYVKKYYEE-------------------------------RGTRKR 1135

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY-------RDVRSDLPVTQ 557
            +  ++R++   Q   G+ R    H  GI++   PL + +  +        D+ +    T 
Sbjct: 1136 NCEINRIV---QGCVGVRRTTGQHPGGIIV--LPLGEEIYSFTPVQHPANDMTTSTVTTH 1190

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT 617
            F+   I+   L+K D LG    T+++   D +    VK     IP D  E   L      
Sbjct: 1191 FDYHSIDH-NLLKLDILGHDDPTMIRMLQDLIGIDPVKD----IPLDSREVMSLFQDTSA 1245

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHP 676
            LGI   +  G      G+     +  + ++   +P    ++V      +G +  + +   
Sbjct: 1246 LGILPDDIGGCPLGALGVPEFGTDFAMQMLLDTKPKYFSDLVRIAGLAHGTDVWLGNAQT 1305

Query: 677  LIDPMLKETQGVIIYQEQVMQ--IAQ-LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
            LI       Q  I  ++ +M   IAQ L  G S +  + +R+  GK +K E +++     
Sbjct: 1306 LIQEGKATIQTAICTRDDIMVYLIAQGLEEGLSFTIMESVRK--GKGLKPEWEEE----- 1358

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
               + +G+      + +    K   Y F K+HAAAY +++++ A+ K  YP+ + AA  +
Sbjct: 1359 --MTAHGVP-----DWYIWSCKKIKYMFPKAHAAAYVMMAWRIAYCKIFYPLAYYAAFFS 1411

Query: 794  L----------------------------------EMDNVEKIKKFCQDARQFNIQIMPP 819
            +                                  E D +  + +  Q+        MP 
Sbjct: 1412 IRASAFSYEIMCQGRDKLEYYLADYKKRADTLSKKEQDTLRDM-RIVQEMYARGYDFMPL 1470

Query: 820  SV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
             +       F++ D ++  SL++I G+G   A  +++A  D  F S+EDF SR
Sbjct: 1471 DIYRAKARHFQIIDGKLMPSLSSIDGLGEKAADAVVDAVKDGIFLSIEDFSSR 1523


>gi|160940984|ref|ZP_02088323.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC BAA-613]
 gi|158436074|gb|EDP13841.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC BAA-613]
          Length = 1565

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 183/885 (20%), Positives = 328/885 (37%), Gaps = 196/885 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +++L     G   +  LVS  +L    ++  RI  S L++   EGLI+ +   +G + +A
Sbjct: 734  VIILAKNDIGRVNMYRLVSWSHLEYYARRP-RIPKSLLEKY-REGLIIGSACEAGELYQA 791

Query: 159  FFFNSSQVAEKRLLTFKKLF-----GDRLYVNLQRHRGYDRYRES------QVVQLAYTH 207
                +      RL++F         G+  ++ L+  +   + +E       ++V+L    
Sbjct: 792  LLRGAPDTEIARLVSFYDYLEIQPLGNNAFM-LRDEKSTVKSQEDLIEINKKIVELGMQF 850

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
               + AT +  FL  +D     ++MA         KD     P  YL+   EM+  FS L
Sbjct: 851  NKLVCATCDVHFLDPQDEVYRRIIMAGQ-----GFKDSDDQAP-LYLRTTEEMLEEFSYL 904

Query: 268  -PE-----ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAVAG 318
             P+      + NT +IA  C  I  V     P  IE   K    I  +  +E+  + +  
Sbjct: 905  GPDKAHEVVITNTRKIADMCEKIAPVRPDKCPPVIEDSDKTLTKICYDRAHEMYGEDLPK 964

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            + V                  RL+ EL+ I    F+  ++I    +  + ++   VG  R
Sbjct: 965  IVV-----------------DRLERELHSIITNGFAVMYIIAQKLVWKSNEDGYLVG-SR 1006

Query: 379  GSGAGSVTAYALTITDIDPLR--------------------------------------- 399
            GS   S  A    IT+++PL                                        
Sbjct: 1007 GSVGSSFVATMSGITEVNPLSPHYHCPKCRYYDFDSEEVKQFSGMAGCDMPDKECPVCGT 1066

Query: 400  ------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
                  F + FE FL       PD D++F  + + +   Y +  +G  +  +  T G+L 
Sbjct: 1067 PLEKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHDYTEVIFGKGQTFRAGTIGTLA 1126

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             K A   V +  +                                R  R  +  ++R++ 
Sbjct: 1127 DKTAFGYVKKYYEE-------------------------------RGTRKRNCEINRIV- 1154

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY-------RDVRSDLPVTQFNMKWIEKA 566
              Q   G+ R    H  GI++   PL + +  +        D+ +    T F+   I+  
Sbjct: 1155 --QGCVGVRRTTGQHPGGIIV--LPLGEEIYSFTPVQHPANDMTTSTVTTHFDYHSIDH- 1209

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
             L+K D LG    T+++   D +    VK     IP D  E   L      LGI   +  
Sbjct: 1210 NLLKLDILGHDDPTMIRMLQDLIGIDPVKD----IPLDSREVMSLFQDTSALGIMPDDIG 1265

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKET 685
            G      G+     +  + ++   +P    ++V      +G +  + +   LI       
Sbjct: 1266 GCPLGALGVPEFGTDFAMQMLLDTKPKYFSDLVRIAGLAHGTDVWLGNAQTLIQEGKATI 1325

Query: 686  QGVIIYQEQVMQ--IAQ-LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            Q  I  ++ +M   IAQ L  G S +  + +R+  GK +K E +++ +        +G+ 
Sbjct: 1326 QTAICTRDDIMVYLIAQGLEQGLSFTIMESVRK--GKGLKPEWEEEMK-------AHGVP 1376

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA---------SMT 793
            +      +    K   Y F K+HAAAY +++++ A+ K  YP+ + AA         S  
Sbjct: 1377 EW-----YIWSCKKIKYMFPKAHAAAYVMMAWRIAYCKIFYPLAYYAAFFSIRASAFSYE 1431

Query: 794  LEMDNVEKIKKFCQD--------------------------ARQFNIQIMPPSV-NTPCV 826
            +     +K++ +  D                          AR F+    P  +      
Sbjct: 1432 IMCQGRDKLEYYLADYKKRADTLSKKEQDTLRDMRIVQEMYARGFD--FTPIDIYRAKAR 1489

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
             F++ D ++  SL++I G+G   A  +++A  D  F S+EDF +R
Sbjct: 1490 HFQIIDGKLMPSLSSIDGLGEKAADAVVDAVKDGAFLSIEDFSNR 1534


>gi|75760862|ref|ZP_00740876.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
            israelensis ATCC 35646]
 gi|74491646|gb|EAO54848.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
            israelensis ATCC 35646]
          Length = 1435

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 196/918 (21%), Positives = 342/918 (37%), Gaps = 226/918 (24%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 609  PSHLTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 666

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 667  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 726

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 727  KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 783

Query: 269  E--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--EVRLA 324
            E  A E  V   ++ + ++    P+                +++L    + G   E R  
Sbjct: 784  EDKAKEVVVTNTQKVASLIGDVRPV----------------KDDLYTPKIEGADDETRDM 827

Query: 325  QGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
               +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG  RGS
Sbjct: 828  SYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-XRGS 886

Query: 381  GAGSVTAYALTITDIDPL-----------------------------------------R 399
               S  A  + IT+++PL                                          
Sbjct: 887  VGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKDCPTCNVAYVKDG 946

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K A  
Sbjct: 947  HDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEKTA-- 1004

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                     Y  V    K   ND  H ++++              +  +DRL+       
Sbjct: 1005 ---------YGYV----KGYAND--HNLTIR--------------NAEIDRLV---AGCT 1032

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKA 566
            G+ R    H  GI++        VP Y D+    P+             T F+   I   
Sbjct: 1033 GVKRTTGQHPGGIIV--------VPDYMDIFDFSPIQFPADSIGAEWRTTHFDFHSIHD- 1083

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT------------- 613
             L+K D LG    T+++   D        +D   IP DD E   + +             
Sbjct: 1084 NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPETLGVTEEQIN 1138

Query: 614  -TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNRKNGK 668
               GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN      
Sbjct: 1139 CKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGTCTLS 1198

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM-DK 727
            E I       D M+      +IYQ     +A     + + E+  +R+  GK + EE  D 
Sbjct: 1199 EVIGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEEWEDD 1241

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             K   + G   +   K               Y F K+HAAAY +++ + A+ K H+ + F
Sbjct: 1242 MKGNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHFALLF 1288

Query: 788  LAASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN---------------- 822
             AA  T+  D  +VE + K     R       Q  +   P   +                
Sbjct: 1289 YAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCERGY 1348

Query: 823  ---------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                     +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R  
Sbjct: 1349 SFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR-- 1406

Query: 874  SKKLNRRVLESLVFAGAL 891
              K+++ ++E L   G L
Sbjct: 1407 -SKVSKTIIEYLDSQGCL 1423


>gi|328462506|gb|EGF34511.1| DNA polymerase III subunit alpha [Lactobacillus rhamnosus MTCC
           5462]
          Length = 122

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 17/133 (12%)

Query: 265 SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
           + L  A+  T  IA R    +    P LP +          +  N+  +K       +LA
Sbjct: 3   AGLQAAVTQTEAIAARADVTIDFKQPQLPHY----------QTPNQTPSK---DYLTKLA 49

Query: 325 QGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
           +  +AK +H Q     Y++RL +EL VI  M F+ YFL+V D + +A K NI  G GRGS
Sbjct: 50  ESGLAKRFHGQSIPPAYQERLQYELRVIIEMGFADYFLVVWDVMNYAHKVNIMTGAGRGS 109

Query: 381 GAGSVTAYALTIT 393
            AGS+ +YAL IT
Sbjct: 110 AAGSLVSYALAIT 122


>gi|188518224|ref|ZP_03003759.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 11 str. ATCC 33695]
 gi|188998138|gb|EDU67235.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 11 str. ATCC 33695]
          Length = 1442

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 146/659 (22%), Positives = 242/659 (36%), Gaps = 174/659 (26%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   S+ A  L ITD++P
Sbjct: 843  EQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGSSLVATFLNITDVNP 901

Query: 398  LR--------------------FSLL-------------------FERFLNPDRMSMPDF 418
            L                     F L+                   FE FL  D   +PD 
Sbjct: 902  LAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPFETFLGFDGDKVPDI 961

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F    +     ++++ +G     +  T G++  K+A   V +  +            
Sbjct: 962  DLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKYFE------------ 1009

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                             +RF E ++   S   L    QK     R    H  GI+I  + 
Sbjct: 1010 -----------------NRFSENQIVRDSTVSLY--VQKCIDSKRTTGQHPGGIIIVPKE 1050

Query: 539  LS--QLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF--LAQ 591
             S     P      D+      T F  +++  + L+KFD LG    T+L+   D+  +  
Sbjct: 1051 YSIWDFSPYNFPANDINETWKTTHFAFEYLHDS-LLKFDILGHDNPTILKLLKDYTGIDD 1109

Query: 592  RGVKV--DLSLIPFDDHETYH------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            R V +   L +  F D    +      L  T G + I +  +  +R  L   +P    D+
Sbjct: 1110 RDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFGTRFVRGMLVDTKPKSFADL 1169

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            I +  L     +             + ++    L+  ++     ++ Y   + Q  +  +
Sbjct: 1170 IRISGLSHGESV--------WLGNAQSLIKSGKLLKDVIACRDDIMTYL--IRQNVEPKT 1219

Query: 704  GYSLSEADVLRRAMGKKIKEEMD------KQKERFISGASKNGISKTIAVNIFELLAKFA 757
             + + E DV +   GKKIK E        K  E +I  A+K                   
Sbjct: 1220 AFLIME-DVRK---GKKIKPEHQSILKELKIPEWYIESANK------------------I 1257

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQD 808
             Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN          E I+K   D
Sbjct: 1258 KYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDLFVINQGKEFIEKTYND 1317

Query: 809  --------------------------------ARQF---NIQIMPPSVNTPCVDFKVGDN 833
                                            AR F   NI I      +  +D +  +N
Sbjct: 1318 IEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQ--NN 1375

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I     AI+G+G T A  I+EA   K F ++ED  +R    K++R  L++L   G LD
Sbjct: 1376 AIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISRTDLKNLRELGVLD 1431


>gi|302386245|ref|YP_003822067.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
 gi|302196873|gb|ADL04444.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
          Length = 1516

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 189/892 (21%), Positives = 323/892 (36%), Gaps = 200/892 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +++L +   G   L  L+S  ++ D   +  RI  S L +   EGLI+ +   +G I +A
Sbjct: 684  VIILAANDVGRVNLYRLISYSHI-DFYARRPRIPKSVLNQ-NREGLIVGSACEAGEIYQA 741

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRES--------------QVVQLA 204
                 S     +L+ F     D L +    + G+    E               ++V L 
Sbjct: 742  LLRGVSDAELAKLVNFY----DYLEIQPLGNNGFMLRDEKSSVKSEQDLIEINQRIVTLG 797

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
                 P+ AT +  FL  ED     ++MA         KD     P  YL+   EM+  F
Sbjct: 798  EQFGKPVCATCDVHFLDPEDEVYRRIIMAGQ-----GFKDSDDQAP-LYLRTTEEMLKEF 851

Query: 265  SDL-PEALE-----NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR----NK 314
              L P   E     NT +IA  C  I    +P+ P     +C  + +  + +LR    ++
Sbjct: 852  QYLGPNKAEEVVIKNTRKIADMCEKI----SPVRP----DKCAPVIENSDEDLRKICYDR 903

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
            A A     L    I          +RL+ EL+ I    F+  ++I    +  + ++   V
Sbjct: 904  AYAIYGENLPSIVI----------ERLERELHSIISNGFAVMYIIAQKLVWKSNEDGYLV 953

Query: 375  GPGRGSGAGSVTAYALTITDIDPLR----------------------------------- 399
            G  RGS   S  AY   IT+++ L                                    
Sbjct: 954  G-SRGSVGSSFVAYLSGITEVNSLSPHYYCASCHYYDFDSDEVKQFSGMAGCDMPDKVCP 1012

Query: 400  ----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                      F + FE FL       PD D++F  + + +   Y +  +G  +  +  T 
Sbjct: 1013 VCGLPLAKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHDYTEVIFGKGQTFRAGTI 1072

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G+L  K A   V    +                  H V         R R   ++     
Sbjct: 1073 GTLADKTAFGYVKNYYE-----------------EHGV---------RKRNCEIS----- 1101

Query: 510  RLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIE 564
                I Q   G+ R    H  GI++      +    P+ R   D+ +    T F+   I+
Sbjct: 1102 ---RIVQGCVGVRRTTGQHPGGIIVLPHGEEIYSFTPVQRPANDMTTMTVTTHFDYHSID 1158

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
               L+K D LG    T+++   D +    VK     IP D  E   L      LGI   +
Sbjct: 1159 H-NLLKLDILGHDDPTMIRMLQDLIGFDPVKD----IPLDSKEVMSLFQNTSALGITPED 1213

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLK 683
              G +    G+     +  + ++   +P    ++V      +G +  + +   LI     
Sbjct: 1214 IGGCKLGALGVPEFGTDFAMQMLIDTQPKYFSDLVRIAGLAHGTDVWLGNAQTLIQEGKA 1273

Query: 684  ETQGVIIYQEQVMQIAQLLS-----GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
              Q  I  ++ +M    L+S     G S S  + +R+  GK +K E +++        + 
Sbjct: 1274 TIQTAICTRDDIM--IYLISMGIEEGLSFSIMESVRK--GKGLKTEWEEE-------MTA 1322

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL---- 794
            +G+      + +    K   Y F K+HAAAY +++++ A+ K  YP+ + A+  ++    
Sbjct: 1323 HGVP-----DWYIWSCKKIKYMFPKAHAAAYVMMAWRIAYCKVFYPLAYYASFFSIRANG 1377

Query: 795  ----------------------EMDNVEKIK-------KFCQDARQFNIQIMPPSV-NTP 824
                                   MD + K +       +  Q+        MP  +    
Sbjct: 1378 FSYELMCQGRDKLEHYLADYKKRMDTLSKKEQDTLRDMRIVQEMYARGYDFMPIDIYRAK 1437

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
               F++ D ++  SL++I G+G   A  I++A  D  F S EDF +R    K
Sbjct: 1438 ARHFQIIDGKLMPSLSSIDGLGEKAADAIVDAGKDGAFLSREDFRNRTKVSK 1489


>gi|188024469|ref|ZP_02997117.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 7 str. ATCC 27819]
 gi|188018579|gb|EDU56619.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 7 str. ATCC 27819]
          Length = 1442

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 146/659 (22%), Positives = 242/659 (36%), Gaps = 174/659 (26%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   S+ A  L ITD++P
Sbjct: 843  EQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGSSLVATFLNITDVNP 901

Query: 398  LR--------------------FSLL-------------------FERFLNPDRMSMPDF 418
            L                     F L+                   FE FL  D   +PD 
Sbjct: 902  LAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPFETFLGFDGDKVPDI 961

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F    +     ++++ +G     +  T G++  K+A   V +  +            
Sbjct: 962  DLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKYFE------------ 1009

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                             +RF E ++   S   L    QK     R    H  GI+I  + 
Sbjct: 1010 -----------------NRFSENQIVRDSTVSLY--VQKCIDSKRTTGQHPGGIIIVPKE 1050

Query: 539  LS--QLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF--LAQ 591
             S     P      D+      T F  +++  + L+KFD LG    T+L+   D+  +  
Sbjct: 1051 YSIWDFSPYNFPANDINETWKTTHFAFEYLHDS-LLKFDILGHDNPTILKLLKDYTGIDD 1109

Query: 592  RGVKV--DLSLIPFDDHETYH------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            R V +   L +  F D    +      L  T G + I +  +  +R  L   +P    D+
Sbjct: 1110 RDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFGTRFVRGMLVDTKPKSFADL 1169

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            I +  L     +             + ++    L+  ++     ++ Y   + Q  +  +
Sbjct: 1170 IRISGLSHGESV--------WLGNAQSLIKSGKLLKDVIACRDDIMTYL--IRQNVEPKT 1219

Query: 704  GYSLSEADVLRRAMGKKIKEEMD------KQKERFISGASKNGISKTIAVNIFELLAKFA 757
             + + E DV +   GKKIK E        K  E +I  A+K                   
Sbjct: 1220 AFLIME-DVRK---GKKIKPEHQSILKELKIPEWYIESANK------------------I 1257

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQD 808
             Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN          E I+K   D
Sbjct: 1258 KYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDLFVINQGKEFIEKTYND 1317

Query: 809  --------------------------------ARQF---NIQIMPPSVNTPCVDFKVGDN 833
                                            AR F   NI I      +  +D +  +N
Sbjct: 1318 IEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQ--NN 1375

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I     AI+G+G T A  I+EA   K F ++ED  +R    K++R  L++L   G LD
Sbjct: 1376 AIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISRTDLKNLRELGVLD 1431


>gi|253579638|ref|ZP_04856907.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849139|gb|EES77100.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1489

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 172/888 (19%), Positives = 321/888 (36%), Gaps = 227/888 (25%)

Query: 78   DMQDNLKMTNQGKTPFPTV---PS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            D++D   +  QG     T+   P+  +++      G   L +LVS+ +L    ++  R+ 
Sbjct: 628  DIRDVDMLNEQGAVSVNTIRKLPTYHVIIFARNETGRINLYKLVSQSHLKYYHRRP-RVP 686

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNL 186
             S L++   +GL++ +   +G + +A   N+      RL+ F      + +  +R  +  
Sbjct: 687  KSVLEQY-RDGLLVGSACEAGELYQAILRNAPDTEIARLVNFYDYLEIQPVGNNRFMIAD 745

Query: 187  QRHRGYDRYRE-----SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
             +H       +      ++V+L    + P+VAT +  F+  +D     ++MA  +    +
Sbjct: 746  DKHDMISSEEDLKEINRKIVKLGEQFKKPVVATCDVHFMDPQDEIYRRIIMA-GNGFSDA 804

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRF 295
             +  P      YL+   EM+  F+ L         + NT +IA     I  +H    P  
Sbjct: 805  DEQAPL-----YLRTTEEMLEEFAYLGSEKAEEVVITNTNKIADMIEKISPIHPDKFPPV 859

Query: 296  IEKECDDIQK---EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            IE    D++     + +E+    +  +                    RLD ELN I    
Sbjct: 860  IENSDQDLKNICFTKAHEMYGDPLPEI-----------------VESRLDRELNSIISNG 902

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL-------------- 398
            ++  ++I    +  + ++   VG  RGS   S+ A    IT+++PL              
Sbjct: 903  YAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSLAATMSGITEVNPLPPHYLCPNPDCKYS 961

Query: 399  ---------------------------------RFSLLFERFLNPDRMSMPDFDIDFCQD 425
                                              F + FE FL       PD D++F  +
Sbjct: 962  DFDSPEVKQYAGMAGCDMPDKICPKCGTRMKKEGFDIPFETFLGFKGDKEPDIDLNFSGE 1021

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIP 480
             +    RY +  +G  +  +  T G+L  K A   V      R +   Y +++R      
Sbjct: 1022 YQANAHRYTEVIFGKGQTFKAGTIGTLAEKTAFGYVKNYFEERGVHKRYCEINR------ 1075

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI---GDR 537
                                             I Q   G+ R    H  GI++   G+ 
Sbjct: 1076 ---------------------------------IVQGCTGVRRTTGQHPGGIIVLPVGEE 1102

Query: 538  PLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             + +  P+     DV SD+  T F+   I+   L+K D LG    T+++   D       
Sbjct: 1103 -IEKFTPVQHPANDVNSDIITTHFDYHSID-GNLLKLDILGHDDPTMIRMLEDLTG---- 1156

Query: 595  KVDLSLIPFDDHETYHLLTTK---------------GTLGIFQLESSGMRQALEGMQPDC 639
             +    +P D  +   L  +                G LGI +  +    Q L   +P  
Sbjct: 1157 -ISARDVPLDQRDVMSLFASTKALKIEPEDIGGCKLGCLGIPEFGTDFAMQMLIDTKPKY 1215

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
              D+I +  L     +          N +  I      I   +     ++IY    +   
Sbjct: 1216 FSDLIRIAGLSHGTDV-------WLGNAQVLIQEGKATISTAICTRDDIMIY----LIGK 1264

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
             + SG + +  + +R+  GK +++E       +I    ++G+      + +    K   Y
Sbjct: 1265 GVESGLAFTIMESVRK--GKGLRDE-------WIETMKEHGVP-----DWYIWSCKLIKY 1310

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             F K+HAAAY +++Y+ AW K   P+ + AA  ++              A  F+ ++M  
Sbjct: 1311 MFPKAHAAAYVMMAYRIAWYKVFQPLAYYAAYFSIR-------------ATAFSYEMM-- 1355

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
                 C    +G  R+ Y +A I+  G        ++++ K  D+L+D
Sbjct: 1356 -----C----MGKERLEYYMAEIRKKG--------DSASKKELDTLKD 1386


>gi|325681442|ref|ZP_08160968.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
            albus 8]
 gi|324106932|gb|EGC01222.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
            albus 8]
          Length = 1498

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 198/944 (20%), Positives = 341/944 (36%), Gaps = 205/944 (21%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            + +DM + L       T    V   ++LV    G + L +L+S   L    K+  RI  S
Sbjct: 619  ITVDMINGLLGETDRVTETKDVYHQIILVRNNIGLKNLYKLISYSNL-KYFKRRPRIPKS 677

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-----GDRLYVNLQRH 189
             L ++  EGLI+ +    G + +A+    S    K++ +F         G+ +++     
Sbjct: 678  ELTKL-REGLILGSACERGEVIQAYLEGKSYDEIKQIASFYDYLEIQPDGNNMFMLTAEK 736

Query: 190  RGYDRYRESQ--------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
              YDR R  +        +V+L     +P+ AT +  FL+ ED +   ++ A    T   
Sbjct: 737  PPYDRIRTEEDVKDINRFIVRLGNDLGIPVCATGDVHFLNREDAKFRAIIQASMGFT--- 793

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRC-----SFILQVHAP 290
              D     P  YLK+ ++M+   + L +       + NT  +A        +F +  + P
Sbjct: 794  --DCDNQAP-LYLKSTNQMLDELAYLGKEKAYEVVVTNTNNVADMIDPDLKAFPVGTYTP 850

Query: 291  ILPRFIEKECDDIQ---KEEENELRNKA-VAGLEVRLAQGAIAKGYHAQDYR----QRLD 342
                FIE    ++Q     +  EL        +EV   +      Y  +       +RL 
Sbjct: 851  ----FIEGAVYELQIICWRKACELYGDCDPMSIEVPEGEDVDVSAYFEEHVHPLVFKRLK 906

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             EL+ I +  FS  ++I    + ++ +    VG  RGS   S  A    I++++PL    
Sbjct: 907  RELDSIIKHGFSVLYMISQKLVAYSNQCGYQVG-SRGSVGSSFVASMSGISEVNPLEPHY 965

Query: 400  --------------------------------------FSLLFERFLNPDRMSMPDFDID 421
                                                    + FE FL  D    PD D++
Sbjct: 966  ICRKCHYSEFFENGEYGSGFDLPPKDCPNCGIPMHRDGHKIPFETFLGFDGDKAPDIDLN 1025

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  D + +V +Y +  +G + V +  T G +  K A   V + L       D   K    
Sbjct: 1026 FSGDCQSKVHKYTEELFGEDHVFKAGTIGKVADKTAYGYVKKYL-------DERGKT--- 1075

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPL 539
              A P  +Q           RL +  VD           + R  S H  G+V+  GD  +
Sbjct: 1076 --ACPAEIQ-----------RLVNGCVD-----------VKRTTSQHPGGMVVIPGDYEV 1111

Query: 540  SQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
                P+        SD+  T F+   +    ++K D LG    T+ +   DF       +
Sbjct: 1112 YDFTPVQHPADKADSDMVTTHFDFHSLHDT-ILKLDELGHDVPTMYKYLEDF-----THM 1165

Query: 597  DLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIED 642
            D++  P  D   Y L T+               GTLGI ++ +  +R  L   +P    D
Sbjct: 1166 DINECPMSDPAVYSLFTSPEALGVKPEDIRCETGTLGIPEMGTPFVRGMLLESKPKNFSD 1225

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++ +  L     +          N +E I +    I  ++     +++Y    +    L 
Sbjct: 1226 LLQISGLSHGTDV-------WLGNAQELIKNGTCDISNVIGTRDSIMVY----LLEHHLE 1274

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
               +    ++ R+    K+  E  KQ  R      +  I   + +           Y F 
Sbjct: 1275 PKLAFKIMEITRKGKAPKLLTEEMKQDMR-AHDVPEWYIDSCLKIK----------YMFP 1323

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE----------------MDNVEKIKKFC 806
            K+HAAAY   + +  W K H P+ F A   T+                  D ++K+    
Sbjct: 1324 KAHAAAYVTAAIRLCWFKVHEPLAFYATYFTVRGEDFDAETTLKGIYMVRDKIDKLSNMS 1383

Query: 807  QDARQF------------------NIQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVGT 847
            ++ R                      + +P  +N +    +++ D +I     AI GVG 
Sbjct: 1384 KEERSGKDSGVLDMLMLTNEMMSRGYEFLPIDINKSHAFIYQIEDGKIRLPFCAINGVGV 1443

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              A  I E +    F S+E+F S      + + V+E+L   GA 
Sbjct: 1444 NAAIAIYEKAQKNDFISIEEFQS---DSGVTKAVVEALENIGAF 1484


>gi|188524415|ref|ZP_03004436.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 12 str. ATCC 33696]
 gi|198273773|ref|ZP_03206307.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 4 str. ATCC 27816]
 gi|195659873|gb|EDX53253.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 12 str. ATCC 33696]
 gi|198249528|gb|EDY74310.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 4 str. ATCC 27816]
          Length = 1442

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 146/659 (22%), Positives = 242/659 (36%), Gaps = 174/659 (26%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   S+ A  L ITD++P
Sbjct: 843  EQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGSSLVATFLNITDVNP 901

Query: 398  LR--------------------FSLL-------------------FERFLNPDRMSMPDF 418
            L                     F L+                   FE FL  D   +PD 
Sbjct: 902  LAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPFETFLGFDGDKVPDI 961

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F    +     ++++ +G     +  T G++  K+A   V +  +            
Sbjct: 962  DLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKYFE------------ 1009

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                             +RF E ++   S   L    QK     R    H  GI+I  + 
Sbjct: 1010 -----------------NRFSENQIVRDSTVSLY--VQKCIDSKRTTGQHPGGIIIVPKE 1050

Query: 539  LS--QLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF--LAQ 591
             S     P      D+      T F  +++  + L+KFD LG    T+L+   D+  +  
Sbjct: 1051 YSIWDFSPYNFPANDINETWKTTHFAFEYLHDS-LLKFDILGHDNPTILKLLKDYTGIDD 1109

Query: 592  RGVKV--DLSLIPFDDHETYH------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            R V +   L +  F D    +      L  T G + I +  +  +R  L   +P    D+
Sbjct: 1110 RDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFGTRFVRGMLVDTKPKSFADL 1169

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            I +  L     +             + ++    L+  ++     ++ Y   + Q  +  +
Sbjct: 1170 IRISGLSHGESV--------WLGNAQSLIKSGKLLKDVIACRDDIMTYL--IRQNVEPKT 1219

Query: 704  GYSLSEADVLRRAMGKKIKEEMD------KQKERFISGASKNGISKTIAVNIFELLAKFA 757
             + + E DV +   GKKIK E        K  E +I  A+K                   
Sbjct: 1220 AFLIME-DVRK---GKKIKPEHQSILKELKIPEWYIESANK------------------I 1257

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQD 808
             Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN          E I+K   D
Sbjct: 1258 KYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDLFVINQGKEFIEKTYND 1317

Query: 809  --------------------------------ARQF---NIQIMPPSVNTPCVDFKVGDN 833
                                            AR F   NI I      +  +D +  +N
Sbjct: 1318 IEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQ--NN 1375

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I     AI+G+G T A  I+EA   K F ++ED  +R    K++R  L++L   G LD
Sbjct: 1376 AIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISRTDLKNLRELGVLD 1431


>gi|191638563|ref|YP_001987729.1| DNA polymerase III PolC [Lactobacillus casei BL23]
 gi|190712865|emb|CAQ66871.1| DNA polymerase III polC-type (PolIII) [Lactobacillus casei BL23]
 gi|327382601|gb|AEA54077.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            casei LC2W]
 gi|327385799|gb|AEA57273.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            casei BD-II]
          Length = 1444

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 170/803 (21%), Positives = 298/803 (37%), Gaps = 201/803 (25%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            +++ +    E P+VAT ++ +L + D     +L+   HS   +        PD + ++ S
Sbjct: 719  KIINIGSELEKPVVATGDAHYLDQHDAIYRQILI---HSQGGANPLNRHSLPDVHFRSTS 775

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
            EM++ FS L E  E   E+    S             I    DD     +++L    V G
Sbjct: 776  EMLTDFSWLGE--EKAHELVVDNS-----------NLIANWVDDDITPVKDKLYTPEVPG 822

Query: 319  LEVRLAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            +E  L    +   +            QRLD EL  I    FS  + I    +  + K+  
Sbjct: 823  VEENLKHDVMTTAHELYGDPLPDIVAQRLDKELKSIIGNGFSVIYNIAQRLVLKSNKDGY 882

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPL---------RFS---------------------- 401
             VG  RGS   S+ A    IT+++PL         ++S                      
Sbjct: 883  LVG-SRGSVGSSLAATMAGITEVNPLPPHYRCPNCQYSEFFTHGEIGSGFDLPDKQCPKC 941

Query: 402  ----------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                      + FE FL      +PD D++F  D +     Y++  +G +   +  T G+
Sbjct: 942  GADLHKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQPIAHNYIKVMFGEDHSFRAGTIGT 1001

Query: 452  LQAKAAL-------RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  K A        RD G+  Q+  +++DRL                             
Sbjct: 1002 VADKTAYGYVKAYERDTGQ--QLRGAEIDRL----------------------------- 1030

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFN 559
                      +Q   G+ R    H AGI+I   D  +    P+     D  +    T F+
Sbjct: 1031 ----------AQGDTGVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTTHFD 1080

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT-TK--- 615
               I    ++K D LG    T+++   D        V+   IP DD     L + TK   
Sbjct: 1081 FHSIHD-NILKMDVLGHDDPTMIRMLQDLSG-----VEPKSIPTDDPGVMALFSGTKSLG 1134

Query: 616  ----------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                      GTLGI +  +  +R  LE  +P    +++ +  L       ++ + N  +
Sbjct: 1135 VTPEQINSKMGTLGIPEFGTRFVRGMLEETKPTTFSELLQISGLSHG---TDVWLGNAEE 1191

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
              K+ IV+        LKE   VI  ++ +M     L  + + +      +M   I E +
Sbjct: 1192 LIKQGIVT--------LKE---VIGCRDNIMMD---LIHWGMED------SMAFNIMEHV 1231

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFA-DYGFNKSHAAAYAVISYQTAWMKTHYP 784
              +K R I    +  + +   V  + + +     Y F K+HA AY +++ + AW K HYP
Sbjct: 1232 --RKGRGIPDDWQKAMRENENVPDWYIESCLKIKYMFPKAHATAYILMALRIAWFKVHYP 1289

Query: 785  VEFLAASMTLEMDN----------------VEKIKKFCQDARQFNIQIMPP-SVNTPCVD 827
            + +  A  ++  ++                +++I     DA     Q++    +   C++
Sbjct: 1290 LIYYTAYFSVRAEDFDLAAMSHGKEAVKAAMKEITDKGMDASTKEKQLLTVLEIANECLE 1349

Query: 828  --FKV----------------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
              FK+                 D+ I     A+ G+G   A+ I+ A  +KPF S ED  
Sbjct: 1350 RGFKIKMIDVTKSDSHNFLIQDDHTILAPFRAVPGLGDNVAKQIVAAREEKPFLSKEDLA 1409

Query: 870  SRVDSKKLNRRVLESLVFAGALD 892
            +R    K+++ +++ +     LD
Sbjct: 1410 NR---GKVSKTLIDYMTTNHVLD 1429


>gi|171920838|ref|ZP_02932008.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 13 str. ATCC 33698]
 gi|171903036|gb|EDT49325.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 13 str. ATCC 33698]
          Length = 1442

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 146/659 (22%), Positives = 242/659 (36%), Gaps = 174/659 (26%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   S+ A  L ITD++P
Sbjct: 843  EQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGSSLVATFLNITDVNP 901

Query: 398  LR--------------------FSLL-------------------FERFLNPDRMSMPDF 418
            L                     F L+                   FE FL  D   +PD 
Sbjct: 902  LAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPFETFLGFDGDKVPDI 961

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F    +     ++++ +G     +  T G++  K+A   V +  +            
Sbjct: 962  DLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKYFE------------ 1009

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                             +RF E ++   S   L    QK     R    H  GI+I  + 
Sbjct: 1010 -----------------NRFSENQIVRDSTVSLY--VQKCIDSKRTTGQHPGGIIIVPKE 1050

Query: 539  LS--QLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF--LAQ 591
             S     P      D+      T F  +++  + L+KFD LG    T+L+   D+  +  
Sbjct: 1051 YSIWDFSPYNFPANDINETWKTTHFAFEYLHDS-LLKFDILGHDNPTILKLLKDYTGIDD 1109

Query: 592  RGVKV--DLSLIPFDDHETYH------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            R V +   L +  F D    +      L  T G + I +  +  +R  L   +P    D+
Sbjct: 1110 RDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFGTRFVRGMLVDTKPKSFADL 1169

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            I +  L     +             + ++    L+  ++     ++ Y   + Q  +  +
Sbjct: 1170 IRISGLSHGESV--------WLGNAQSLIKSGKLLKDVIACRDDIMTYL--IRQNVEPKT 1219

Query: 704  GYSLSEADVLRRAMGKKIKEEMD------KQKERFISGASKNGISKTIAVNIFELLAKFA 757
             + + E DV +   GKKIK E        K  E +I  A+K                   
Sbjct: 1220 AFLIME-DVRK---GKKIKPEHQSILKELKIPEWYIESANK------------------I 1257

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQD 808
             Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN          E I+K   D
Sbjct: 1258 KYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDLFVINQGKEFIEKTYND 1317

Query: 809  --------------------------------ARQF---NIQIMPPSVNTPCVDFKVGDN 833
                                            AR F   NI I      +  +D +  +N
Sbjct: 1318 IEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQ--NN 1375

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I     AI+G+G T A  I+EA   K F ++ED  +R    K++R  L++L   G LD
Sbjct: 1376 AIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISRTDLKNLRELGVLD 1431


>gi|229134625|ref|ZP_04263435.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
 gi|228648886|gb|EEL04911.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
          Length = 1433

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 193/916 (21%), Positives = 341/916 (37%), Gaps = 222/916 (24%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +  +EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDAIYRKIL--VSSQGGANPLNRHSLPPVHF-RTTNEMLDCFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            E       + NT +IA     +  V   +    IE   D+ +  + + +  +++ G E+ 
Sbjct: 782  EDKAKEIVVTNTHKIASLIGDVRPVKDDLYTPKIEGADDETR--DMSYIMARSIYGDEL- 838

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                        +    RL+ EL  I    F+  +LI    ++ +  +   VG  RGS  
Sbjct: 839  -----------PEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRGSVG 886

Query: 383  GSVTAYALTITDIDPL-----------------------------------------RFS 401
             S  A  + IT+++PL                                            
Sbjct: 887  SSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPTCNVPYVKDGHD 946

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K A    
Sbjct: 947  IPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKLLFGEDYVYRAGTIGTVAEKTA---- 1002

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
                   Y  V                 +  A+D       + +  +DRL+       G+
Sbjct: 1003 -------YGYV-----------------KGYANDHNL---TIRNAEIDRLV---AGCTGV 1032

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGL 568
             R    H  GI++        VP Y D+    P+             T F+   I    L
Sbjct: 1033 KRTTGQHPGGIIV--------VPDYMDIFDFSPIQFPADSIGAEWRTTHFDFHSIHD-NL 1083

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------T 614
            +K D LG    T+++   D        +D   IP DD E   + +               
Sbjct: 1084 LKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTEEQINCK 1138

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNRKNGKEK 670
             GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN      E 
Sbjct: 1139 TGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGTCTLSEV 1198

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ-K 729
            I       D M+      +IYQ     +A     + + E+  +R+  GK + EE +++ +
Sbjct: 1199 IGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEEWEEEMR 1241

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
               + G   +   K               Y F K+HAAAY +++ + A+ K H+ + F A
Sbjct: 1242 NNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHFALLFYA 1288

Query: 790  ASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------------ 822
            A  T+  D  +VE + K     R       Q  +   P   +                  
Sbjct: 1289 AYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCERGYSF 1348

Query: 823  -------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                   +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R    
Sbjct: 1349 QKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAAFSIVEARKNGDFLSKEDLQQR---S 1405

Query: 876  KLNRRVLESLVFAGAL 891
            K+++ ++E L   G L
Sbjct: 1406 KVSKTIIEYLDGQGCL 1421


>gi|163941555|ref|YP_001646439.1| DNA polymerase III PolC [Bacillus weihenstephanensis KBAB4]
 gi|163863752|gb|ABY44811.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis KBAB4]
          Length = 1433

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 193/916 (21%), Positives = 341/916 (37%), Gaps = 222/916 (24%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +  +EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDAIYRKIL--VSSQGGANPLNRHSLPPVHF-RTTNEMLDCFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            E       + NT +IA     +  V   +    IE   D+ +  + + +  +++ G E+ 
Sbjct: 782  EDKAKEIVVTNTHKIASLIGDVRPVKDDLYTPKIEGADDETR--DMSYIMARSIYGDEL- 838

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                        +    RL+ EL  I    F+  +LI    ++ +  +   VG  RGS  
Sbjct: 839  -----------PEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRGSVG 886

Query: 383  GSVTAYALTITDIDPL-----------------------------------------RFS 401
             S  A  + IT+++PL                                            
Sbjct: 887  SSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPTCNVPYVKDGHD 946

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K A    
Sbjct: 947  IPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKLLFGEDYVYRAGTIGTVAEKTA---- 1002

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
                   Y  V                 +  A+D       + +  +DRL+       G+
Sbjct: 1003 -------YGYV-----------------KGYANDHNL---TIRNAEIDRLV---AGCTGV 1032

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGL 568
             R    H  GI++        VP Y D+    P+             T F+   I    L
Sbjct: 1033 KRTTGQHPGGIIV--------VPDYMDIFDFSPIQFPADSIGAEWRTTHFDFHSIHD-NL 1083

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------T 614
            +K D LG    T+++   D        +D   IP DD E   + +               
Sbjct: 1084 LKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTEEQINCK 1138

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNRKNGKEK 670
             GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN      E 
Sbjct: 1139 TGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGTCTLSEV 1198

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ-K 729
            I       D M+      +IYQ     +A     + + E+  +R+  GK + EE +++ +
Sbjct: 1199 IGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEEWEEEMR 1241

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
               + G   +   K               Y F K+HAAAY +++ + A+ K H+ + F A
Sbjct: 1242 NNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHFALLFYA 1288

Query: 790  ASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------------ 822
            A  T+  D  +VE + K     R       Q  +   P   +                  
Sbjct: 1289 AYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCERGYSF 1348

Query: 823  -------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                   +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R    
Sbjct: 1349 QKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAAFSIVEARKNGDFLSKEDLQQR---S 1405

Query: 876  KLNRRVLESLVFAGAL 891
            K+++ ++E L   G L
Sbjct: 1406 KVSKTIIEYLDGQGCL 1421


>gi|319939893|ref|ZP_08014248.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV]
 gi|319810904|gb|EFW07223.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV]
          Length = 1464

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 141/690 (20%), Positives = 262/690 (37%), Gaps = 168/690 (24%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVVSQKD-RPRVTPDHYLKNRSEMVS 262
            P++AT +  ++  E+    ++++      A+ + T+   ++ +P   P  + +  +EM+ 
Sbjct: 735  PVLATGDVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLD 794

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      +N  ++A     I  V   +   FI+K                  
Sbjct: 795  EFAFLGEELARQVVIDNPNQLAATFESIEVVKGDLYTPFIDKS----------------- 837

Query: 317  AGLEVRLAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
               E ++A+   AK +            +R++ EL  I    F+  +L     +Q + + 
Sbjct: 838  ---EEKVAEMTYAKAFEIYGNPLPDIVDRRIERELTSILGNGFAVIYLASQMLVQRSNER 894

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPL---------RFS-------------------- 401
               VG  RGS   S  A  + IT+++PL         ++S                    
Sbjct: 895  GYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMPDKDCP 953

Query: 402  ------------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                        + FE FL  D   +PD D++F  + +      V++ +G E   +  T 
Sbjct: 954  HCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTV 1013

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++ AK A   V +  +  Y++  R                              D  V+
Sbjct: 1014 GTVAAKTAYGFV-KGYERDYNKFYR------------------------------DAEVE 1042

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------T 556
            RL   +Q   G+ R    H  GIV+        +P Y DV    PV             T
Sbjct: 1043 RL---AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDLTAEWQTT 1091

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             FN   I++  ++K D LG    T+++K  D        +D + IP DD E   L +   
Sbjct: 1092 HFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNEIPMDDQEVMALFSGTD 1145

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIH 675
             LG+ Q E  G    + G+       +  +V    P     ++  +   +G +  + +  
Sbjct: 1146 VLGVTQ-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQ 1204

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             LI   + +   VI  ++ +M       L    S +  + +R+ M  KI    D+++  +
Sbjct: 1205 DLIKQGIADLSTVIGCRDDIMVYLMHKGLEPKMSFTIMERVRKGMWLKIS---DEERNGY 1261

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I+   +N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  
Sbjct: 1262 IAAMKENNVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYF 1316

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            ++              A+ F+I++M   ++
Sbjct: 1317 SIR-------------AKAFDIKVMSSGLD 1333


>gi|307298437|ref|ZP_07578240.1| DNA polymerase III, alpha subunit [Thermotogales bacterium
            mesG1.Ag.4.2]
 gi|306915602|gb|EFN45986.1| DNA polymerase III, alpha subunit [Thermotogales bacterium
            mesG1.Ag.4.2]
          Length = 1412

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 166/790 (21%), Positives = 285/790 (36%), Gaps = 203/790 (25%)

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS----IF 264
            +P+V T +  F++  D    D+  A  ++      D  +  P  YL    EM+     IF
Sbjct: 707  IPVVMTGDVHFVNPHD----DIYRAAINAA--QDYDNFQNQPSLYLHTTEEMIGKALEIF 760

Query: 265  SDLPEALENTVE----IARRCSFILQVHAPILPRFIEKECDDIQK---EEENELRNKAVA 317
             D   A E  V+    IA +   ++ +   + P  IE   ++++K   E    L  K + 
Sbjct: 761  EDEGIAKEIVVDNSRLIASQIENVVPIEGKLHPPVIEGADEEVRKMAIENAERLYGKPLP 820

Query: 318  GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
             +                   +RL+ EL  I    ++  +LI    ++ + ++   VG  
Sbjct: 821  DI-----------------VEKRLNRELEAIIGHGYAVLYLIAQKMVKKSNEDGYVVG-S 862

Query: 378  RGSGAGSVTAYALTITDIDPL--------------------------------------- 398
            RGS   S+ A  + IT+++PL                                       
Sbjct: 863  RGSVGSSLVANVIGITEVNPLPPHYLCPECGKSVFPETDLESGYDLPAMKCPGCGNEMLK 922

Query: 399  -RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
               S+ FE FL  +   +PD D++F  + +++   +++  +G + V +  T  ++  + A
Sbjct: 923  NGQSIPFETFLGFEGDKVPDIDLNFSGEYQEKAHSFIEELFGRDHVFRAGTISTVAERTA 982

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
               V RA      +  R                      R  + R+A           + 
Sbjct: 983  FGFV-RAYSEKSGKTLR----------------------RAEQERIA-----------RG 1008

Query: 518  LEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFD 572
            + G+ R    H  G++I   D  +    P+     D +S +  T F  + I    L+K D
Sbjct: 1009 IVGVKRTTGQHPGGLMIVPKDMDVHNFTPVQHPANDTKSSILTTHFAYEVIHD-DLVKID 1067

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET-------------YHLLTTK-GTL 618
             LG    T ++   D        VD   IP DD ET             +H L T  GTL
Sbjct: 1068 ALGHDDPTFIKMLKDITG-----VDPEKIPMDDEETLGIFSSLKPLGLRFHELGTDVGTL 1122

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            GI +  ++ +R  L   +P    +++ +  L          V+ N  N K+ I S H  +
Sbjct: 1123 GIPEFGTTFVRSMLSDTRPSTFGELVRISGLSH-----GTDVWLN--NAKDIITSGHASL 1175

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
                     VI  ++ +M     L G  +   +        KI E++ K K   +S   +
Sbjct: 1176 SQ-------VIACRDDIMN---YLIGKGMEPKEAF------KIMEKVRKGKG--LSKEDE 1217

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL---E 795
              +    A   F    K   Y F ++HAAAY  + Y+ A+ K H+P+ F +   ++   E
Sbjct: 1218 IEVRSCGAPEWFMNSCKKIKYLFPRAHAAAYVSMGYRVAYFKVHFPLAFYSTYFSIKGGE 1277

Query: 796  MD------NVEKIKKFCQDARQ----------------------------FNIQIMPPSV 821
             D      ++  IKK     R                              N+ +M    
Sbjct: 1278 FDIDICTSDINSIKKEIVRLRSDQDRNVKDRAKETLLEVVMEMKLRGFSFLNVDLM---- 1333

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
             +    F +  N +   L  ++ +G   AR +      +PF S+ED   R     LN+  
Sbjct: 1334 ESHPTRFLIEGNSLRIPLNRLQNMGDKAARSVEVEREKRPFSSVEDLIRRT---ALNKTS 1390

Query: 882  LESLVFAGAL 891
            +E L   GAL
Sbjct: 1391 VEMLRKYGAL 1400


>gi|195867849|ref|ZP_03079848.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 9 str. ATCC 33175]
 gi|195660426|gb|EDX53684.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 9 str. ATCC 33175]
          Length = 1442

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 146/659 (22%), Positives = 242/659 (36%), Gaps = 174/659 (26%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   S+ A  L ITD++P
Sbjct: 843  EQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGSSLVATFLNITDVNP 901

Query: 398  LR--------------------FSLL-------------------FERFLNPDRMSMPDF 418
            L                     F L+                   FE FL  D   +PD 
Sbjct: 902  LAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPFETFLGFDGDKVPDI 961

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F    +     ++++ +G     +  T G++  K+A   V +  +            
Sbjct: 962  DLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKYFE------------ 1009

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                             +RF E ++   S   L    QK     R    H  GI+I  + 
Sbjct: 1010 -----------------NRFSENQIVRDSTVSLY--VQKCIDSKRTTGQHPGGIIIVPKE 1050

Query: 539  LS--QLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF--LAQ 591
             S     P      D+      T F  +++  + L+KFD LG    T+L+   D+  +  
Sbjct: 1051 YSIWDFSPYNFPANDINETWKTTHFAFEYLHDS-LLKFDILGHDNPTILKLLKDYTGIDD 1109

Query: 592  RGVKV--DLSLIPFDDHETYH------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            R V +   L +  F D    +      L  T G + I +  +  +R  L   +P    D+
Sbjct: 1110 RDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFGTRFVRGMLVDTKPKSFADL 1169

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            I +  L     +             + ++    L+  ++     ++ Y   + Q  +  +
Sbjct: 1170 IRISGLSHGESV--------WLGNAQSLIKSGKLLKDVIACRDDIMTYL--IRQNVEPKT 1219

Query: 704  GYSLSEADVLRRAMGKKIKEEMD------KQKERFISGASKNGISKTIAVNIFELLAKFA 757
             + + E DV +   GKKIK E        K  E +I  A+K                   
Sbjct: 1220 AFLIME-DVRK---GKKIKPEHQSILKELKIPEWYIESANK------------------I 1257

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQD 808
             Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN          E I+K   D
Sbjct: 1258 KYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDLFVINQGKEFIEKTYND 1317

Query: 809  --------------------------------ARQF---NIQIMPPSVNTPCVDFKVGDN 833
                                            AR F   NI I      +  +D +  +N
Sbjct: 1318 IEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQ--NN 1375

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I     AI+G+G T A  I+EA   K F ++ED  +R    K++R  L++L   G LD
Sbjct: 1376 AIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISRTDLKNLRELGVLD 1431


>gi|185178976|ref|ZP_02964733.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 5 str. ATCC 27817]
 gi|225551037|ref|ZP_03771983.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 8 str. ATCC 27618]
 gi|184209258|gb|EDU06301.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 5 str. ATCC 27817]
 gi|225378852|gb|EEH01217.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 8 str. ATCC 27618]
          Length = 1442

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 146/659 (22%), Positives = 242/659 (36%), Gaps = 174/659 (26%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   S+ A  L ITD++P
Sbjct: 843  EQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGSSLVATFLNITDVNP 901

Query: 398  LR--------------------FSLL-------------------FERFLNPDRMSMPDF 418
            L                     F L+                   FE FL  D   +PD 
Sbjct: 902  LAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPFETFLGFDGDKVPDI 961

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F    +     ++++ +G     +  T G++  K+A   V +  +            
Sbjct: 962  DLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKYFE------------ 1009

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                             +RF E ++   S   L    QK     R    H  GI+I  + 
Sbjct: 1010 -----------------NRFSENQIVRDSTVSLY--VQKCIDSKRTTGQHPGGIIIVPKE 1050

Query: 539  LS--QLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF--LAQ 591
             S     P      D+      T F  +++  + L+KFD LG    T+L+   D+  +  
Sbjct: 1051 YSIWDFSPYNFPANDINETWKTTHFAFEYLHDS-LLKFDILGHDNPTILKLLKDYTGIDD 1109

Query: 592  RGVKV--DLSLIPFDDHETYH------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            R V +   L +  F D    +      L  T G + I +  +  +R  L   +P    D+
Sbjct: 1110 RDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFGTRFVRGMLVDTKPKSFADL 1169

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            I +  L     +             + ++    L+  ++     ++ Y   + Q  +  +
Sbjct: 1170 IRISGLSHGESV--------WLGNAQSLIKSGKLLKDVIACRDDIMTYL--IRQNVEPKT 1219

Query: 704  GYSLSEADVLRRAMGKKIKEEMD------KQKERFISGASKNGISKTIAVNIFELLAKFA 757
             + + E DV +   GKKIK E        K  E +I  A+K                   
Sbjct: 1220 AFLIME-DVRK---GKKIKPEHQSILKELKIPEWYIESANK------------------I 1257

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQD 808
             Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN          E I+K   D
Sbjct: 1258 KYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDLFVINQGKEFIEKTYND 1317

Query: 809  --------------------------------ARQF---NIQIMPPSVNTPCVDFKVGDN 833
                                            AR F   NI I      +  +D +  +N
Sbjct: 1318 IEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQ--NN 1375

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I     AI+G+G T A  I+EA   K F ++ED  +R    K++R  L++L   G LD
Sbjct: 1376 AIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISRTDLKNLRELGVLD 1431


>gi|312871361|ref|ZP_07731457.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 3008A-a]
 gi|312872402|ref|ZP_07732471.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 2062A-h1]
 gi|311091984|gb|EFQ50359.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 2062A-h1]
 gi|311093113|gb|EFQ51461.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 3008A-a]
          Length = 1420

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 163/803 (20%), Positives = 305/803 (37%), Gaps = 201/803 (25%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
            + + +L     +P+VAT+++ ++ ++D     +L++   +     + +    PD +    
Sbjct: 700  TNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLSAQKAN----RGKNYELPDLHFYTT 755

Query: 258  SEMVSIFSDL-PE-----ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEE 308
             EM+  FS L P+      ++NT  IA +   +  + + + P  IE   KE + +  ++ 
Sbjct: 756  QEMLDAFSFLDPKIAEEIVIKNTNMIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKA 815

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            +EL    +  +                  + RL++EL  I    ++  +LI    +  + 
Sbjct: 816  HELYGNPLPKI-----------------VKDRLEYELKSIISNGYAVIYLISQRLVAKSN 858

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFER------------- 406
            K+   VG  RGS   S+ A    IT+++PL         ++S  FE+             
Sbjct: 859  KDGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKK 917

Query: 407  -------------------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                               FL      +PD D++F  D +     Y++  +G +   +  
Sbjct: 918  CPKCNADLAKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAG 977

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G++  K A           Y  V                 +   D++   E +L +  
Sbjct: 978  TIGTVADKIA-----------YGYV-----------------KHYEDEN---ELKLRNAE 1006

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKW 562
            +DRL   SQ   G+ R    H AGIV+   D  +    P+     D+ +    T F+   
Sbjct: 1007 LDRL---SQGASGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHS 1063

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    ++KFD LG    T+++     + Q    VD   IP  D     L +         
Sbjct: 1064 IHD-NILKFDILGHDDPTMIR-----MLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTP 1117

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
                   GTLG+ +  +  +R  LE  +P    +++ +  L     +             
Sbjct: 1118 EQIGVNTGTLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDV------------- 1164

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIA---QLLSGYSLSEADVLRRAMGKKIKEEM 725
              + +   LI+  + + + VI  ++ +M       +    + S  + +R   GK I +E 
Sbjct: 1165 -WLGNAEDLINKGICKLKNVIGCRDNIMTDLIHWDVPPEVAFSTMESVRH--GKGISDEN 1221

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
                   ++  SKN   K I     +   K   Y F K+HA AY +++ + AW K +YPV
Sbjct: 1222 -------MAILSKN---KNIPDWYIQSCLKIK-YMFPKAHATAYILMALRIAWFKVYYPV 1270

Query: 786  EFLAASMTLEMD----------------NVEKIKKFCQDA-------------------R 810
             +  + +++  D                 ++KI+    +A                   R
Sbjct: 1271 IYYTSYLSVRADLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLER 1330

Query: 811  QFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
              NI ++     +  ++FK+ D + I      + G+G   A+ I+ A  ++PF S ED  
Sbjct: 1331 GININMVDIE-KSDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLS 1389

Query: 870  SRVDSKKLNRRVLESLVFAGALD 892
             R    K+++ ++E     G LD
Sbjct: 1390 IR---GKVSQTIMEYFENNGVLD 1409


>gi|209554353|ref|YP_002284813.1| DNA polymerase III PolC [Ureaplasma urealyticum serovar 10 str. ATCC
            33699]
 gi|209541854|gb|ACI60083.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 10 str. ATCC 33699]
          Length = 1442

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 146/659 (22%), Positives = 242/659 (36%), Gaps = 174/659 (26%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   S+ A  L ITD++P
Sbjct: 843  EQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGSSLVATFLNITDVNP 901

Query: 398  LR--------------------FSLL-------------------FERFLNPDRMSMPDF 418
            L                     F L+                   FE FL  D   +PD 
Sbjct: 902  LAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPFETFLGFDGDKVPDI 961

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F    +     ++++ +G     +  T G++  K+A   V +  +            
Sbjct: 962  DLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKYFE------------ 1009

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                             +RF E ++   S   L    QK     R    H  GI+I  + 
Sbjct: 1010 -----------------NRFSENQIVRDSTVSLY--VQKCIDSKRTTGQHPGGIIIVPKE 1050

Query: 539  LS--QLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF--LAQ 591
             S     P      D+      T F  +++  + L+KFD LG    T+L+   D+  +  
Sbjct: 1051 YSIWDFSPYNFPANDINETWKTTHFAFEYLHDS-LLKFDILGHDNPTILKLLKDYTGIDD 1109

Query: 592  RGVKV--DLSLIPFDDHETYH------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            R V +   L +  F D    +      L  T G + I +  +  +R  L   +P    D+
Sbjct: 1110 RDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFGTRFVRGMLVDTKPKSFADL 1169

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            I +  L     +             + ++    L+  ++     ++ Y   + Q  +  +
Sbjct: 1170 IRISGLSHGESV--------WLGNAQSLIKSGKLLKDVIACRDDIMTYL--IRQNVEPKT 1219

Query: 704  GYSLSEADVLRRAMGKKIKEEMD------KQKERFISGASKNGISKTIAVNIFELLAKFA 757
             + + E DV +   GKKIK E        K  E +I  A+K                   
Sbjct: 1220 AFLIME-DVRK---GKKIKPEHQSILKELKIPEWYIESANK------------------I 1257

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQD 808
             Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN          E I+K   D
Sbjct: 1258 KYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDLFVINQGKEFIEKTYND 1317

Query: 809  --------------------------------ARQF---NIQIMPPSVNTPCVDFKVGDN 833
                                            AR F   NI I      +  +D +  +N
Sbjct: 1318 IEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVIDKQ--NN 1375

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I     AI+G+G T A  I+EA   K F ++ED  +R    K++R  L++L   G LD
Sbjct: 1376 AIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISRTDLKNLRELGVLD 1431


>gi|282882108|ref|ZP_06290749.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus
            lacrimalis 315-B]
 gi|281298138|gb|EFA90593.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus
            lacrimalis 315-B]
          Length = 1415

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 174/889 (19%), Positives = 332/889 (37%), Gaps = 210/889 (23%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            S+ +L    EG + L +LVS  ++     +  ++  S + +   +GL++ +G  SG I  
Sbjct: 590  SLSILTKNEEGLKNLYKLVSDSHM-KYFNRVAKVPRSLINKY-RKGLLIGSGDESGEIFN 647

Query: 158  AFFFNSSQVAEKRLLTFKKLFG----DRLYVNLQRHRGYDRYRES------QVVQLAYTH 207
            AFF N      +++ +F         D    +L R++     RE       ++ ++    
Sbjct: 648  AFFRNLEIDEVEKIASFYDYLEIQPIDNFIPSLLRNK---LTREDIIEINKKICKVGENL 704

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
             +P++AT+N  +L E+D    D++  +  +  V         PD+  K + ++    +DL
Sbjct: 705  GIPVIATSNCFYLDEKD----DLVRRIILNGKVG-------APDYNAKIKQKLYFRSTDL 753

Query: 268  PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
               LE  + +    +  + V    L   I    D+++   + +     + G E  L    
Sbjct: 754  --MLEEFLYLGTDKAMEVVVTNTNL---INDSIDNVKPIPDGKYP-PVIEGSEETLKNIT 807

Query: 328  IAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
              K +        Q    RL  EL+ I    ++  ++I    ++ +  +   VG  RGS 
Sbjct: 808  YKKAHEIYGDPLPQIVEARLKKELDSIISNGYAVLYIIAQKLVKKSNDDGYLVG-SRGSV 866

Query: 382  AGSVTAYALTITDIDPL---------RFS------------------------------- 401
              S  A+   IT+++PL         ++S                               
Sbjct: 867  GSSFAAHMADITEVNPLPAHYICPQCKYSEFMEDPTIGSGVDLADKNCPKCGHKLNKNGH 926

Query: 402  -LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL       PD D++F  + +    +Y +  +G   V +  T G +  K A   
Sbjct: 927  NIPFEVFLGFYGDKEPDIDLNFAGEYQPNAHKYTEELFGKGYVFRAGTIGKVAYKTAYGY 986

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V +  +                                 +  ++   VDRL   + +  G
Sbjct: 987  VKKFFE--------------------------------NQEDISQTEVDRL---TIEATG 1011

Query: 521  LYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + R +  H  G++I    + +    P+     D  S +  T F+  +I    ++K D LG
Sbjct: 1012 VKRTSGQHPGGVMICPKSKDIFDFTPIQYPADDKSSGVITTHFDYNFIH-GKILKLDILG 1070

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKGTLGIF 621
                T+++   DF+      +D S IP DD +T  L +              + GTLGI 
Sbjct: 1071 HDGPTIIKMLEDFIG-----IDTSKIPLDDKDTLSLFSSGEKLNLDKNIFDVSTGTLGIP 1125

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            +  +  +RQ L   +P    +++ +  L     +          N  + + S    +  +
Sbjct: 1126 EFGTGFVRQMLIDTKPKNFAELVRISGLSHGTDV-------WLGNAADLVSSGQASLSEV 1178

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            +   + +++Y    +  A   +  +    + +R+  GK + EE  K              
Sbjct: 1179 ICTREDIMLY----LIAAGAENKMAFDTMEKVRK--GKGLTEEQIK-------------- 1218

Query: 742  SKTIAVNIFELLAKFAD------YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                 +N  +L   + D      Y F K+HA AY ++S++ A+ K +YP+ F A   T++
Sbjct: 1219 ----IMNNLKLPPWYIDSCLKIKYMFPKAHAVAYVMLSFRIAYCKLNYPLAFYATYFTIK 1274

Query: 796  MDNV---------EKIK-----------------------KFCQDARQFNIQIMPPSV-N 822
            + +          E IK                       +   +     ++ +P  +  
Sbjct: 1275 LSDFVGEVIINGPEAIKAQIDFINNKETPSSKEQTQMPIYEVALEMYSRGLEFLPVDIYK 1334

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            +   +F + D +I   L A+ GVG   A++I+EA  D  F S ED   R
Sbjct: 1335 SKAQEFTIEDKKIRMPLRALTGVGEQAAKNIIEARNDGQFLSKEDLLKR 1383


>gi|325911796|ref|ZP_08174200.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners UPII 143-D]
 gi|325476302|gb|EGC79464.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners UPII 143-D]
          Length = 1416

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 163/803 (20%), Positives = 305/803 (37%), Gaps = 201/803 (25%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
            + + +L     +P+VAT+++ ++ ++D     +L++   +     + +    PD +    
Sbjct: 696  TNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLSAQKAN----RGKNYELPDLHFYTT 751

Query: 258  SEMVSIFSDL-PE-----ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEE 308
             EM+  FS L P+      ++NT  IA +   +  + + + P  IE   KE + +  ++ 
Sbjct: 752  QEMLDAFSFLDPKIAEEIVIKNTNMIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKA 811

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            +EL    +  +                  + RL++EL  I    ++  +LI    +  + 
Sbjct: 812  HELYGNPLPKI-----------------VKDRLEYELKSIISNGYAVIYLISQRLVAKSN 854

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFER------------- 406
            K+   VG  RGS   S+ A    IT+++PL         ++S  FE+             
Sbjct: 855  KDGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKK 913

Query: 407  -------------------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                               FL      +PD D++F  D +     Y++  +G +   +  
Sbjct: 914  CPKCNADLAKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAG 973

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G++  K A           Y  V                 +   D++   E +L +  
Sbjct: 974  TIGTVADKIA-----------YGYV-----------------KHYEDEN---ELKLRNAE 1002

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKW 562
            +DRL   SQ   G+ R    H AGIV+   D  +    P+     D+ +    T F+   
Sbjct: 1003 LDRL---SQGASGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHS 1059

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    ++KFD LG    T+++     + Q    VD   IP  D     L +         
Sbjct: 1060 IHD-NILKFDILGHDDPTMIR-----MLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTP 1113

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
                   GTLG+ +  +  +R  LE  +P    +++ +  L     +             
Sbjct: 1114 EQIGVNTGTLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDV------------- 1160

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIA---QLLSGYSLSEADVLRRAMGKKIKEEM 725
              + +   LI+  + + + VI  ++ +M       +    + S  + +R   GK I +E 
Sbjct: 1161 -WLGNAEDLINKGICKLKNVIGCRDNIMTDLIHWDVPPEVAFSTMESVRH--GKGISDEN 1217

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
                   ++  SKN   K I     +   K   Y F K+HA AY +++ + AW K +YPV
Sbjct: 1218 -------MAILSKN---KNIPDWYIQSCLKIK-YMFPKAHATAYILMALRIAWFKVYYPV 1266

Query: 786  EFLAASMTLEMD----------------NVEKIKKFCQDA-------------------R 810
             +  + +++  D                 ++KI+    +A                   R
Sbjct: 1267 IYYTSYLSVRADLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLER 1326

Query: 811  QFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
              NI ++     +  ++FK+ D + I      + G+G   A+ I+ A  ++PF S ED  
Sbjct: 1327 GININMVDIE-KSDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLS 1385

Query: 870  SRVDSKKLNRRVLESLVFAGALD 892
             R    K+++ ++E     G LD
Sbjct: 1386 IR---GKVSQTIMEYFENNGVLD 1405


>gi|187778984|ref|ZP_02995457.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC 15579]
 gi|187772609|gb|EDU36411.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC 15579]
          Length = 1442

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 188/902 (20%), Positives = 330/902 (36%), Gaps = 201/902 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +++L   A G + L +LVS+  L    K+  R+  S + E   EGLI+ +   +G I + 
Sbjct: 619  LIILAKNAVGLKNLYKLVSKSNLEYFFKRP-RMAKSLINEY-KEGLIIGSACEAGQIYKE 676

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
                 ++   K ++ F      + L  +   V     +  +  +E   ++ +L   +  P
Sbjct: 677  ILKGKTKEELKNMIDFYDYLEIQPLGNNEFLVKNGSVKDEEELKEINKKICELGEFYNKP 736

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
            +VAT +  FL EE      +LM+       S  D     P  Y +   EM+  F  L E 
Sbjct: 737  VVATCDVHFLDEEHEVFRRILMS---GQGFSDADN---QPPLYFRTTEEMLKEFEYLGEE 790

Query: 270  -----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
                  + NT +IA     I  +     P  IE   +DI        RN     + ++ A
Sbjct: 791  KAKEVVIYNTNKIADMIDEIKPIPEETFPPKIEGAEEDI--------RN-----MTIKKA 837

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                      +   +RL  ELN I    ++  +LI    +  + ++   VG  RGS   S
Sbjct: 838  HDIYGDPL-PEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SRGSVGSS 895

Query: 385  VTAYALTITDIDPL---------RFS--------------------------------LL 403
              A    IT+++ L         ++S                                + 
Sbjct: 896  FAATMSDITEVNGLPPHYICPKCKYSEFFTDGSVGSGADLEDKDCPKCGTKLIKDGHDIP 955

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A   V +
Sbjct: 956  FETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTAYGFVKK 1015

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             L                                 +  +  +  ++RL   S+   G+ R
Sbjct: 1016 YLDE-------------------------------KNIKANNAEIERL---SKGCTGVKR 1041

Query: 524  HASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
             +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D LG   
Sbjct: 1042 TSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSIS-GRLLKLDILGHDD 1100

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLE 624
             T+L+     + Q   +VD   +P  D +   L T+               GT G+ +  
Sbjct: 1101 PTVLR-----MLQDLTQVDPKAVPLGDPKVISLFTSTKALGVTEEDIDCPVGTYGLPEFG 1155

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +  +RQ L   +P    +++ +  L       ++ + N +   KE   +I   I      
Sbjct: 1156 TKFVRQMLLDTKPKSFAELVRISGLSHGT---DVWLNNAQYFIKEGYTTIKDCIST---- 1208

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK-QKERFISGASKNGISK 743
               +++Y  Q     +  S +++ E   +R+  GK + EE +   KE  +         K
Sbjct: 1209 RDDIMVYLLQKGLPPK--SAFTIMEK--VRK--GKGLTEEQEALMKEHDVPDWYIESCKK 1262

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---- 799
                           Y F K HA AY +++ + A+ K +YP  +     ++  D+     
Sbjct: 1263 I-------------KYMFPKGHAVAYVMMAMRIAYFKVYYPKAYYTTYFSVRADDFDADL 1309

Query: 800  -----EKIK------------------------KFCQDARQFNIQIMPPSV-NTPCVDFK 829
                 EKIK                        + C +  +  I+ +   +  +    F 
Sbjct: 1310 IVKGEEKIKEKMNELYAMGNNITQKDKGLLTILEICYEMYKRGIKFLKVDLYKSNATKFL 1369

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +  + I   L+A++GVG   A+ I EA  +  F S ED   R    K+ + V+E+L   G
Sbjct: 1370 IEGDSIRPPLSALQGVGKNAAKSIEEARLEGEFISKEDLRLRT---KVTKTVIETLANHG 1426

Query: 890  AL 891
             L
Sbjct: 1427 CL 1428


>gi|229013001|ref|ZP_04170166.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
 gi|228748255|gb|EEL98115.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
          Length = 1435

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 193/916 (21%), Positives = 340/916 (37%), Gaps = 222/916 (24%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 609  PSHLTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 666

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 667  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 726

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +  +EM+  FS L 
Sbjct: 727  KPVVATGNVHYLDPEDAIYRKIL--VSSQGGANPLNRHSLPPVHF-RTTNEMLDCFSFLG 783

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            E       + NT +IA     +  V   +    IE   D+ +  + + +  +++ G E+ 
Sbjct: 784  EDKAKEIVVTNTHKIASLIGDVRPVKDDLYTPKIEGADDETR--DMSYIMARSIYGDEL- 840

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                        +    RL+ EL  I    F+  +LI    ++ +  +   VG  RGS  
Sbjct: 841  -----------PEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRGSVG 888

Query: 383  GSVTAYALTITDIDPL-----------------------------------------RFS 401
             S  A  + IT+++PL                                            
Sbjct: 889  SSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPTCNVPYVKDGHD 948

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K A    
Sbjct: 949  IPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKLLFGEDYVYRAGTIGTVAEKTA---- 1004

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
                   Y  V                 +  A+D       + +  +DRL+       G+
Sbjct: 1005 -------YGYV-----------------KGYANDHNL---TIRNAEIDRLV---AGCTGV 1034

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGL 568
             R    H  GI++        VP Y D+    P+             T F+   I    L
Sbjct: 1035 KRTTGQHPGGIIV--------VPDYMDIFDFSPIQFPADSIGAEWRTTHFDFHSIHD-NL 1085

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------T 614
            +K D LG    T+++   D        +D   IP DD E   + +               
Sbjct: 1086 LKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTEEQINCK 1140

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNRKNGKEK 670
             GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN      E 
Sbjct: 1141 TGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGTCTLSEV 1200

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ-K 729
            I       D M+      +IYQ     +A     + + E+  +R+  GK + EE +++ +
Sbjct: 1201 IGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEEWEEEMR 1243

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
               + G   +   K               Y F K+HAAAY +++ + A+ K H+ + F A
Sbjct: 1244 NNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHFALLFYA 1290

Query: 790  ASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPS-------------------- 820
            A  T+  D  +VE + K     R       Q  +   P                      
Sbjct: 1291 AYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCERGYSF 1350

Query: 821  -----VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                   +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R    
Sbjct: 1351 QKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAAFSIVEARKNGDFLSKEDLQQR---S 1407

Query: 876  KLNRRVLESLVFAGAL 891
            K+++ ++E L   G L
Sbjct: 1408 KVSKTIIEYLDGQGCL 1423


>gi|229061421|ref|ZP_04198766.1| DNA polymerase III polC-type [Bacillus cereus AH603]
 gi|228717844|gb|EEL69492.1| DNA polymerase III polC-type [Bacillus cereus AH603]
          Length = 1433

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 193/916 (21%), Positives = 340/916 (37%), Gaps = 222/916 (24%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +  +EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDAIYRKIL--VSSQGGANPLNRHSLPPVHF-RTTNEMLDCFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            E       + NT +IA     +  V   +    IE   D+ +  + + +  +++ G E+ 
Sbjct: 782  EDKAKEIVVTNTHKIASLIGDVRPVKDDLYTPKIEGADDETR--DMSYIMARSIYGDEL- 838

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                        +    RL+ EL  I    F+  +LI    ++ +  +   VG  RGS  
Sbjct: 839  -----------PEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRGSVG 886

Query: 383  GSVTAYALTITDIDPL-----------------------------------------RFS 401
             S  A  + IT+++PL                                            
Sbjct: 887  SSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPTCNVPYVKDGHD 946

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K A    
Sbjct: 947  IPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKLLFGEDYVYRAGTIGTVAEKTA---- 1002

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
                   Y  V                 +  A+D       + +  +DRL+       G+
Sbjct: 1003 -------YGYV-----------------KGYANDHNL---TIRNAEIDRLV---AGCTGV 1032

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGL 568
             R    H  GI++        VP Y D+    P+             T F+   I    L
Sbjct: 1033 KRTTGQHPGGIIV--------VPDYMDIFDFSPIQFPADSIGAEWRTTHFDFHSIHD-NL 1083

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------T 614
            +K D LG    T+++   D        +D   IP DD E   + +               
Sbjct: 1084 LKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTEEQINCK 1138

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNRKNGKEK 670
             GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN      E 
Sbjct: 1139 TGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGTCTLSEV 1198

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ-K 729
            I       D M+      +IYQ     +A     + + E+  +R+  GK + EE +++ +
Sbjct: 1199 IGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEEWEEEMR 1241

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
               + G   +   K               Y F K+HAAAY +++ + A+ K H+ + F A
Sbjct: 1242 NNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHFALLFYA 1288

Query: 790  ASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPS-------------------- 820
            A  T+  D  +VE + K     R       Q  +   P                      
Sbjct: 1289 AYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCERGYSF 1348

Query: 821  -----VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                   +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R    
Sbjct: 1349 QKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAAFSIVEARKNGDFLSKEDLQQR---S 1405

Query: 876  KLNRRVLESLVFAGAL 891
            K+++ ++E L   G L
Sbjct: 1406 KVSKTIIEYLDGQGCL 1421


>gi|229168557|ref|ZP_04296280.1| DNA polymerase III polC-type [Bacillus cereus AH621]
 gi|228614963|gb|EEK72065.1| DNA polymerase III polC-type [Bacillus cereus AH621]
          Length = 1433

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 193/916 (21%), Positives = 341/916 (37%), Gaps = 222/916 (24%)

Query: 97   PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607  PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156  DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
              A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665  FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +  +EM+  FS L 
Sbjct: 725  KPVVATGNVHYLDPEDAIYRKIL--VSSQGGANPLNRHSLPPVHF-RTTNEMLDCFSFLG 781

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            E       + NT +IA     +  V   +    IE   D+ +  + + +  +++ G E+ 
Sbjct: 782  EDKAKEIVVTNTNKIASLIGDVRPVKDDLYTPKIEGADDETR--DMSYVMARSIYGDEL- 838

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                        +    RL+ EL  I    F+  +LI    ++ +  +   VG  RGS  
Sbjct: 839  -----------PEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRGSVG 886

Query: 383  GSVTAYALTITDIDPL-----------------------------------------RFS 401
             S  A  + IT+++PL                                            
Sbjct: 887  SSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDKECPTCNVPYVKDGHD 946

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K A    
Sbjct: 947  IPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKLLFGEDYVYRAGTIGTVAEKTA---- 1002

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
                   Y  V                 +  A+D       + +  +DRL+       G+
Sbjct: 1003 -------YGYV-----------------KGYANDHNL---TIRNAEIDRLV---AGCTGV 1032

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGL 568
             R    H  GI++        VP Y D+    P+             T F+   I    L
Sbjct: 1033 KRTTGQHPGGIIV--------VPDYMDIFDFSPIQFPADSIGAEWRTTHFDFHSIHD-NL 1083

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------T 614
            +K D LG    T+++   D        +D   IP DD E   + +               
Sbjct: 1084 LKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGPESLGVTEEQINCK 1138

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI----DNIVVYNNRKNGKEK 670
             GTLGI +  +  +RQ LE  +P    +++ +  L     +     N ++YN      E 
Sbjct: 1139 TGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWLGNANELIYNGTCTLSEV 1198

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ-K 729
            I       D M+      +IYQ     +A     + + E+  +R+  GK + EE +++ +
Sbjct: 1199 IGCRD---DIMV-----YLIYQGLDPSLA-----FKIMES--VRK--GKGVPEEWEEEMR 1241

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
               + G   +   K               Y F K+HAAAY +++ + A+ K H+ + F A
Sbjct: 1242 NNNVPGWYIDSCKKI-------------KYMFPKAHAAAYVLMAVRIAYFKVHFALLFYA 1288

Query: 790  ASMTLEMD--NVEKIKKFCQDAR-------QFNIQIMPPSVN------------------ 822
            A  T+  D  +VE + K     R       Q  +   P   +                  
Sbjct: 1289 AYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCERGYSF 1348

Query: 823  -------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                   +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R    
Sbjct: 1349 QKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAAFSIVEARKNGDFLSKEDLQQR---S 1405

Query: 876  KLNRRVLESLVFAGAL 891
            K+++ ++E L   G L
Sbjct: 1406 KVSKTIIEYLDGQGCL 1421


>gi|259501583|ref|ZP_05744485.1| DNA polymerase III [Lactobacillus iners DSM 13335]
 gi|302191443|ref|ZP_07267697.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus iners AB-1]
 gi|259167101|gb|EEW51596.1| DNA polymerase III [Lactobacillus iners DSM 13335]
          Length = 1420

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 163/803 (20%), Positives = 305/803 (37%), Gaps = 201/803 (25%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
            + + +L     +P+VAT+++ ++ ++D     +L++   +     + +    PD +    
Sbjct: 700  TNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLSAQKAN----RGKNYELPDLHFYTT 755

Query: 258  SEMVSIFSDL-PE-----ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEE 308
             EM+  FS L P+      ++NT  IA +   +  + + + P  IE   KE + +  ++ 
Sbjct: 756  QEMLDAFSFLDPKIAEEIVIKNTNMIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKA 815

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            +EL    +  +                  + RL++EL  I    ++  +LI    +  + 
Sbjct: 816  HELYGNPLPKI-----------------VKDRLEYELKSIISNGYAVIYLISQRLVAKSN 858

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFER------------- 406
            K+   VG  RGS   S+ A    IT+++PL         ++S  FE+             
Sbjct: 859  KDGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKK 917

Query: 407  -------------------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                               FL      +PD D++F  D +     Y++  +G +   +  
Sbjct: 918  CPKCNADLAKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAG 977

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G++  K A           Y  V                 +   D++   E +L +  
Sbjct: 978  TIGTVADKIA-----------YGYV-----------------KHYEDEN---ELKLRNAE 1006

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKW 562
            +DRL   SQ   G+ R    H AGIV+   D  +    P+     D+ +    T F+   
Sbjct: 1007 LDRL---SQGASGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHS 1063

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    ++KFD LG    T+++     + Q    VD   IP  D     L +         
Sbjct: 1064 IHD-NILKFDILGHDDPTMIR-----MLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTP 1117

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
                   GTLG+ +  +  +R  LE  +P    +++ +  L     +             
Sbjct: 1118 EQIGVNTGTLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDV------------- 1164

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIA---QLLSGYSLSEADVLRRAMGKKIKEEM 725
              + +   LI+  + + + VI  ++ +M       +    + S  + +R   GK I +E 
Sbjct: 1165 -WLGNAEDLINKGICKLKNVIGCRDNIMTDLIHWDVPPEVAFSTMESVRH--GKGISDEN 1221

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
                   ++  SKN   K I     +   K   Y F K+HA AY +++ + AW K +YPV
Sbjct: 1222 -------MAILSKN---KNIPDWYIQSCLKIK-YMFPKAHATAYILMALRIAWFKVYYPV 1270

Query: 786  EFLAASMTLEMD----------------NVEKIKKFCQDA-------------------R 810
             +  + +++  D                 ++KI+    +A                   R
Sbjct: 1271 IYYTSYLSVRADLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLER 1330

Query: 811  QFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
              NI ++     +  ++FK+ D + I      + G+G   A+ I+ A  ++PF S ED  
Sbjct: 1331 GININMVDIE-KSDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLS 1389

Query: 870  SRVDSKKLNRRVLESLVFAGALD 892
             R    K+++ ++E     G LD
Sbjct: 1390 IR---GKVSQTIMEYFENNGVLD 1409


>gi|182417583|ref|ZP_02948906.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum 5521]
 gi|237668138|ref|ZP_04528122.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum E4 str. BoNT E BL5262]
 gi|182378596|gb|EDT76124.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum 5521]
 gi|237656486|gb|EEP54042.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum E4 str. BoNT E BL5262]
          Length = 1450

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 184/916 (20%), Positives = 321/916 (35%), Gaps = 218/916 (23%)

Query: 94   PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG 153
            PT  +I+L   T  G + L +++S  ++ D  ++  R   S + E+  EGLI+ +   +G
Sbjct: 625  PTYHAIIL-AKTQAGLKNLYKMISTAHI-DNFQRRPRTPKSLIAEM-REGLIIGSACEAG 681

Query: 154  PIDRAFFFNSSQVAEKRLLTFKKLF-----GDRLYV---NLQRHRGYDRYRESQVVQLAY 205
             + +A     S    K ++ F          + L++    + +     +    ++  +  
Sbjct: 682  EVYKAVLDGKSDEELKAIMEFYDYLEIQPIANNLFLIEKGMVKDENELKTINKKIYDIGK 741

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
              +   VAT +  F+  +D     +LMA         KD  +  P  Y +   EM+  F+
Sbjct: 742  ECDKMTVATCDVHFMDPKDEAFRRILMAGQ-----GFKDADK-QPPLYFRTTEEMLKEFA 795

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
             L         +ENT +IA     I  +     P  IE   +DI+    N++ +     L
Sbjct: 796  YLGSEIANEVVIENTNKIADSIDIIKPIPDETFPPKIEGAEEDIRNMTMNKVHSIYGENL 855

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                           +  ++RLD ELN I    ++  +LI    +  +  +   VG  RG
Sbjct: 856  --------------PEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSNDDGYLVG-SRG 900

Query: 380  SGAGSVTAYALTITDIDPL----------------------------------------- 398
            S   S  A    IT+++ L                                         
Sbjct: 901  SVGSSFVATMSDITEVNGLPPHYVCPNCKKSEFFMDGSISSGADLDDKDCPECGTPYKKD 960

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               + FE FL  +    PD D++F  + +  V RY +  +G     +  T G++  K A 
Sbjct: 961  GHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHRYCEVLFGKGHTFKAGTIGTVAEKTAY 1020

Query: 459  RDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
              V      R + +P ++VDRL                                      
Sbjct: 1021 GYVKKYLDERGIVVPQAEVDRL-------------------------------------- 1042

Query: 514  ISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGL 568
             +    G+ R    H  GI++   D  +    P+     D  +D+  T F+   I    L
Sbjct: 1043 -TIGCTGIKRTTGQHPGGIMVVPADNEIYNFCPIQHPADDNDTDVITTHFDYHSIS-GRL 1100

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE---- 624
            +K D LG    T+L+     + Q    +D   IP +D +   L T+   LG+ + E    
Sbjct: 1101 LKLDILGHDDPTVLR-----MLQDITGLDPKTIPLNDKKVLSLFTSPEALGVTKEELECE 1155

Query: 625  --SSGM--------RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
              S G+        RQ L   QP    D++ +  L       ++ + N +   KE   ++
Sbjct: 1156 VGSYGLPEFGTKFVRQMLVDTQPKTFSDLVRISGLSHG---TDVWLNNAQYYIKEGFTTL 1212

Query: 675  HPLI----DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
               I    D M+      I  +     + ++  G  LSE D     + KK         E
Sbjct: 1213 RECIATRDDIMVYLMYKDIPPKTAFTIMEKVRKGKGLSEDD---ETLMKK-----HNVPE 1264

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             +I    K                    Y F K HA AY +++ + A+ K +YP  + A 
Sbjct: 1265 WYIGSCKK------------------IKYMFPKGHAVAYVMMAVRIAYFKVYYPQAYYAT 1306

Query: 791  SMTLEMDNVE---------------------------------KIKKFCQDARQFNIQIM 817
              T+  D+ +                                  + + C +A +  +  +
Sbjct: 1307 YFTVRADDFDANLICLGEGAVHAKLQELYALGNNASVKDKGMITVLELCFEAYKRGVNFL 1366

Query: 818  PPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
               +  +  V F + D  +   L AI G+    A+ I+EA  +  F S ED   R     
Sbjct: 1367 RVDLYKSDAVKFIIEDGNLRPPLNAIPGIADNAAKGIVEARKNGEFISKEDLRIRAG--- 1423

Query: 877  LNRRVLESLVFAGALD 892
            +++  +E L   G L+
Sbjct: 1424 VSKTAIEGLTSHGCLE 1439


>gi|309807200|ref|ZP_07701174.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LactinV 03V1-b]
 gi|308166421|gb|EFO68626.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LactinV 03V1-b]
          Length = 1424

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 163/803 (20%), Positives = 305/803 (37%), Gaps = 201/803 (25%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
            + + +L     +P+VAT+++ ++ ++D     +L++   +     + +    PD +    
Sbjct: 704  TNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLSAQKAN----RGKNYELPDLHFYTT 759

Query: 258  SEMVSIFSDL-PE-----ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEE 308
             EM+  FS L P+      ++NT  IA +   +  + + + P  IE   KE + +  ++ 
Sbjct: 760  QEMLDAFSFLDPKIAEEIVIKNTNMIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKA 819

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            +EL    +  +                  + RL++EL  I    ++  +LI    +  + 
Sbjct: 820  HELYGNPLPKI-----------------VKDRLEYELKSIISNGYAVIYLISQRLVAKSN 862

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFER------------- 406
            K+   VG  RGS   S+ A    IT+++PL         ++S  FE+             
Sbjct: 863  KDGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKK 921

Query: 407  -------------------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                               FL      +PD D++F  D +     Y++  +G +   +  
Sbjct: 922  CPKCNADLAKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAG 981

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G++  K A           Y  V                 +   D++   E +L +  
Sbjct: 982  TIGTVADKIA-----------YGYV-----------------KHYEDEN---ELKLRNAE 1010

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKW 562
            +DRL   SQ   G+ R    H AGIV+   D  +    P+     D+ +    T F+   
Sbjct: 1011 LDRL---SQGASGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHS 1067

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    ++KFD LG    T+++     + Q    VD   IP  D     L +         
Sbjct: 1068 IHD-NILKFDILGHDDPTMIR-----MLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTP 1121

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
                   GTLG+ +  +  +R  LE  +P    +++ +  L     +             
Sbjct: 1122 EQIGVNTGTLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDV------------- 1168

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIA---QLLSGYSLSEADVLRRAMGKKIKEEM 725
              + +   LI+  + + + VI  ++ +M       +    + S  + +R   GK I +E 
Sbjct: 1169 -WLGNAEDLINKGICKLKNVIGCRDNIMTDLIHWDVPPEVAFSTMESVRH--GKGISDEN 1225

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
                   ++  SKN   K I     +   K   Y F K+HA AY +++ + AW K +YPV
Sbjct: 1226 -------MAILSKN---KNIPDWYIQSCLKIK-YMFPKAHATAYILMALRIAWFKVYYPV 1274

Query: 786  EFLAASMTLEMD----------------NVEKIKKFCQDA-------------------R 810
             +  + +++  D                 ++KI+    +A                   R
Sbjct: 1275 IYYTSYLSVRADLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLER 1334

Query: 811  QFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
              NI ++     +  ++FK+ D + I      + G+G   A+ I+ A  ++PF S ED  
Sbjct: 1335 GININMVDIE-KSDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLS 1393

Query: 870  SRVDSKKLNRRVLESLVFAGALD 892
             R    K+++ ++E     G LD
Sbjct: 1394 IR---GKVSQTIMEYFENNGVLD 1413


>gi|15896683|ref|NP_350032.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC
            824]
 gi|15026532|gb|AAK81372.1|AE007841_7 DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC
            824]
 gi|325510847|gb|ADZ22483.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum EA
            2018]
          Length = 1452

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 167/805 (20%), Positives = 292/805 (36%), Gaps = 208/805 (25%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++++L      P+VAT +  F+  ED     +L A         KD     P  YL+   
Sbjct: 729  KIIELGEKLNKPVVATGDVHFIDPEDEIYRRILEAGQ-----GFKDADNQAP-LYLRTTE 782

Query: 259  EMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFI---EKECDDIQKEEEN 309
            EM+  FS L         + NT +I+  C  I  +     P  I   E+   DI  E+ +
Sbjct: 783  EMLQEFSYLGREKAYEVVVTNTNKISDMCEQISPISPEKCPPHIDGCEQTIKDIAYEKAH 842

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL    +  +                  +QRLD EL  I +  FS  ++I    +  + +
Sbjct: 843  ELYGDPLPEI-----------------VQQRLDKELESIIKNGFSVMYIIAQKLVWKSNE 885

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFS------------------- 401
            +   VG  RGS   S  A    IT+++ L         ++S                   
Sbjct: 886  DGYLVG-SRGSVGSSFVANMTGITEVNSLPPHYRCPKCKYSDFSDYGVKNGFDLPDKTCP 944

Query: 402  ------------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                        + FE FL  +    PD D++F  + + +  RY +  +G     +  T 
Sbjct: 945  VCGEPLTKDGIDIPFETFLGFNGDKEPDIDLNFSGEYQAKAHRYTEVIFGKGTTFKAGTI 1004

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++  K A   V +  +          K IP + A                         
Sbjct: 1005 GTIAEKTAFGYVKKYYEE---------KSIPVNKAE------------------------ 1031

Query: 510  RLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIE 564
             ++ IS+   G+ R    H  GI++    R + +  P+     D  SD+  T F+   I+
Sbjct: 1032 -IIRISRGCTGIKRTTGQHPGGIIVVPKGREIFEFCPVQHPADDPNSDIITTHFDYHSID 1090

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------- 615
            +  L+K D LG    T+++     + Q    ++   IP DD ET  L ++          
Sbjct: 1091 Q-NLLKLDILGHDDPTVIR-----MLQDITGINPHEIPMDDKETMSLFSSTKALGVTPEQ 1144

Query: 616  -----GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
                 GT GI +  +  +R  L    P    D+I +  L         V   N K+    
Sbjct: 1145 INSKVGTFGIPEFGTKFVRGMLLDTMPKTFSDLICISGLSH----GTDVWLGNAKD---- 1196

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQV-----MQIAQLLSGYSLSEA----DVLRRAMGKKI 721
                  LID      QG++   E V     + I  +  G   + A    +++R+  GK +
Sbjct: 1197 ------LID------QGIVTLSEAVCTRDDIMIYLIKKGLPPNTAFKIMELVRK--GKAL 1242

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K+   K+   + +   ++ + +    +  ++   F      K+HAAAY +++++ AW K 
Sbjct: 1243 KDP--KKWAEYEALMREHEVPEWYIDSCRKIKYMFP-----KAHAAAYVMMAFRIAWFKV 1295

Query: 782  HYPVEFLAASMTLEMD---------NVEKIKKFCQDARQFNIQIMPPSVN---------- 822
            H P  + AA  ++              EK+K+  ++ +    +  P   +          
Sbjct: 1296 HIPKAYYAAYFSIRAKAFDAEFMIFGKEKVKQKMKEIQMMGNEAGPKDKDMYDDLEIVLE 1355

Query: 823  ---------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLE 866
                           +    F V ++ +   + +I G+G   A  I  A   +KP  S++
Sbjct: 1356 MYERGFNFLPIDIYKSHATKFLVEEDGLRPPINSISGMGNVAAEGIYNAMQEEKPISSIQ 1415

Query: 867  DFCSRVDSKKLNRRVLESLVFAGAL 891
            D   R    K+    ++SL   G L
Sbjct: 1416 DLKKRA---KIGNSAIDSLRKFGCL 1437


>gi|227534929|ref|ZP_03964978.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
            ATCC 25302]
 gi|227187685|gb|EEI67752.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
            ATCC 25302]
          Length = 1437

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 170/794 (21%), Positives = 294/794 (37%), Gaps = 201/794 (25%)

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
            E P+VAT ++ +L + D     +L+   HS   +        PD + ++ SEM++ FS L
Sbjct: 721  EKPVVATGDAHYLDQHDAIYRQILI---HSQGGANPLNRHSLPDVHFRSTSEMLTDFSWL 777

Query: 268  PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
             E  E   E+    S             I    DD     +++L    V G+E  L    
Sbjct: 778  GE--EKAHELVVDNS-----------NLIANWVDDDITPVKDKLYTPEVPGVEENLKHDV 824

Query: 328  IAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
            +   +            QRLD EL  I    FS  + I    +  + K+   VG  RGS 
Sbjct: 825  MTTAHELYGDPLPDIVAQRLDKELKSIIGNGFSVIYNIAQRLVLKSNKDGYLVG-SRGSV 883

Query: 382  AGSVTAYALTITDIDPL---------RFS------------------------------- 401
              S+ A    IT+++PL         ++S                               
Sbjct: 884  GSSLAATMAGITEVNPLPPHYRCPNCQYSEFFTHGEIGSGFDLPDKQCPKCGADLHKDGH 943

Query: 402  -LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL-- 458
             + FE FL      +PD D++F  D +     Y++  +G +   +  T G++  K A   
Sbjct: 944  DIPFETFLGFHGDKVPDIDLNFSGDYQPIAHNYIKVMFGEDHSFRAGTIGTVADKTAYGY 1003

Query: 459  -----RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
                 RD G+  Q+  +++DRL                                      
Sbjct: 1004 VKAYERDTGQ--QLRGAEIDRL-------------------------------------- 1023

Query: 514  ISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGL 568
             +Q   G+ R    H AGI+I   D  +    P+     D  +    T F+   I    +
Sbjct: 1024 -AQGDTGVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTTHFDFHSIHD-NI 1081

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT-TK------------ 615
            +K D LG    T+++   D        V+   IP DD     L + TK            
Sbjct: 1082 LKMDVLGHDDPTMIRMLQDLSG-----VEPKSIPTDDPGVMALFSGTKSLGVTPEQINSK 1136

Query: 616  -GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
             GTLGI +  +  +R  LE  +P    +++ +  L       ++ + N  +  K+ IV+ 
Sbjct: 1137 MGTLGIPEFGTRFVRGMLEETKPTTFSELLQISGLSHG---TDVWLGNAEELIKQGIVT- 1192

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
                   LKE   VI  ++ +M     L  + + +      +M   I E +  +K R I 
Sbjct: 1193 -------LKE---VIGCRDNIMMD---LIHWGMED------SMAFNIMEHV--RKGRGIP 1231

Query: 735  GASKNGISKTIAVNIFELLAKFA-DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
               +  + +   V  + + +     Y F K+HA AY +++ + AW K HYP+ +  A  +
Sbjct: 1232 DDWQKAMRENENVPDWYIESCLKIKYMFPKAHATAYILMALRIAWFKVHYPLIYYTAYFS 1291

Query: 794  LEMDN----------------VEKIKKFCQDARQFNIQIMPP-SVNTPCVD--FKV---- 830
            +  ++                +++I     DA     Q++    +   C++  FK+    
Sbjct: 1292 VRAEDFDLAAMSHGKEAVKAAMKEITDKGMDASTKEKQLLTVLEIANECLERGFKIKMID 1351

Query: 831  ------------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                         D+ I     A+ G+G   A+ I+ A  +KPF S ED  +R    K++
Sbjct: 1352 VTKSDSHNFLIQDDHTILAPFRAVPGLGDNVAKQIVAAREEKPFLSKEDLANR---GKVS 1408

Query: 879  RRVLESLVFAGALD 892
            + +++ +     LD
Sbjct: 1409 KTLIDYMTTNHVLD 1422


>gi|312875787|ref|ZP_07735779.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 2053A-b]
 gi|311088691|gb|EFQ47143.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 2053A-b]
          Length = 1424

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 163/803 (20%), Positives = 305/803 (37%), Gaps = 201/803 (25%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
            + + +L     +P+VAT+++ ++ ++D     +L++   +     + +    PD +    
Sbjct: 704  TNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLSAQKAN----RGKNYELPDLHFYTT 759

Query: 258  SEMVSIFSDL-PE-----ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEE 308
             EM+  FS L P+      ++NT  IA +   +  + + + P  IE   KE + +  ++ 
Sbjct: 760  QEMLDAFSFLDPKIAEEIVIKNTNMIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKA 819

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            +EL    +  +                  + RL++EL  I    ++  +LI    +  + 
Sbjct: 820  HELYGNPLPKI-----------------VKDRLEYELKSIISNGYAVIYLISQRLVAKSN 862

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFER------------- 406
            K+   VG  RGS   S+ A    IT+++PL         ++S  FE+             
Sbjct: 863  KDGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKK 921

Query: 407  -------------------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                               FL      +PD D++F  D +     Y++  +G +   +  
Sbjct: 922  CPKCNADLAKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAG 981

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G++  K A           Y  V                 +   D++   E +L +  
Sbjct: 982  TIGTVADKIA-----------YGYV-----------------KHYEDEN---ELKLRNAE 1010

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKW 562
            +DRL   SQ   G+ R    H AGIV+   D  +    P+     D+ +    T F+   
Sbjct: 1011 LDRL---SQGASGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHS 1067

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    ++KFD LG    T+++     + Q    VD   IP  D     L +         
Sbjct: 1068 IHD-NILKFDILGHDDPTMIR-----MLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTP 1121

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
                   GTLG+ +  +  +R  LE  +P    +++ +  L     +             
Sbjct: 1122 EQIGVNTGTLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDV------------- 1168

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIA---QLLSGYSLSEADVLRRAMGKKIKEEM 725
              + +   LI+  + + + VI  ++ +M       +    + S  + +R   GK I +E 
Sbjct: 1169 -WLGNAEDLINKGICKLKNVIGCRDNIMTDLIHWDVPPEVAFSTMESVRH--GKGISDEN 1225

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
                   ++  SKN   K I     +   K   Y F K+HA AY +++ + AW K +YPV
Sbjct: 1226 -------MAILSKN---KNIPDWYIQSCLKIK-YMFPKAHATAYILMALRIAWFKVYYPV 1274

Query: 786  EFLAASMTLEMD----------------NVEKIKKFCQDA-------------------R 810
             +  + +++  D                 ++KI+    +A                   R
Sbjct: 1275 IYYTSYLSVRADLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLER 1334

Query: 811  QFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
              NI ++     +  ++FK+ D + I      + G+G   A+ I+ A  ++PF S ED  
Sbjct: 1335 GININMVDIE-KSDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLS 1393

Query: 870  SRVDSKKLNRRVLESLVFAGALD 892
             R    K+++ ++E     G LD
Sbjct: 1394 IR---GKVSQTIMEYFENNGVLD 1413


>gi|311068180|ref|YP_003973103.1| DNA polymerase III PolC [Bacillus atrophaeus 1942]
 gi|310868697|gb|ADP32172.1| DNA polymerase III PolC [Bacillus atrophaeus 1942]
          Length = 1437

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 167/812 (20%), Positives = 294/812 (36%), Gaps = 216/812 (26%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKN 256
            + + +L    + P+VAT N  +L++ED     +L++    +  +++ + P+V    + + 
Sbjct: 718  TNITKLGEKLDKPVVATGNVHYLNDEDKIYRKILISSQGGANPLNRHELPKV----HFRT 773

Query: 257  RSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE--EENELR 312
              EM+  FS L   +A E  V   ++ + +++   PI       + +   +E  + +  R
Sbjct: 774  TDEMLEAFSFLGAEKAKEIVVANTQKVASMIEEIKPIKDDLYTPKIEGADQEIRDMSYQR 833

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             +++ G E+             +    R++ EL  I    F+  +LI    ++ +  +  
Sbjct: 834  ARSIYGEEL------------PEIVEARIEKELKSIIGHGFAVIYLISHKLVKRSLDDGY 881

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFER------FLNPDRMS--- 414
             VG  RGS   S+ A    IT+++PL         R S  F        F  PD+M    
Sbjct: 882  LVG-SRGSVGSSLVATLTEITEVNPLAPHYVCPECRHSEFFNDGSVGSGFDLPDKMCPNC 940

Query: 415  -----------------------MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                                   +PD D++F  + +     Y +  +G + V +  T G+
Sbjct: 941  NTPLKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHNYTKVLFGEDNVYRAGTIGT 1000

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            +  K A           Y  V                 +  A D       +    +DRL
Sbjct: 1001 VAEKTA-----------YGYV-----------------KGYAGDHNLH---MRGAEIDRL 1029

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQF 558
            +   Q   G+ R    H  GI++        VP Y D+    P+             T F
Sbjct: 1030 V---QGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFSPIQFPADATGSEWKTTHF 1078

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL------ 612
            +   I    L+K D LG    T+++   D        +D   IP DD E   +       
Sbjct: 1079 DFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFQGTESL 1132

Query: 613  --------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
                       GTLGI +  +  +RQ LE  +P    +++ +  L     +         
Sbjct: 1133 GVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHGTDV-------WL 1185

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA----DVLRRAMG-- 718
             N +E       LI   + E   VI  ++ +M +  +  G   S A    + +R+  G  
Sbjct: 1186 GNAQE-------LIHNNICELSEVIGCRDDIM-VYLIYQGLEPSLAFKIMEFVRKGKGLT 1237

Query: 719  KKIKEEMDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             + +EEM   K  + +I    K                    Y F K+HAAAY +++ + 
Sbjct: 1238 PEWEEEMKNNKVPDWYIDSCKK------------------IKYMFPKAHAAAYVLMAVRI 1279

Query: 777  AWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVNTPCV- 826
            A+ K H+ + + AA  T+  D+ +          IK    D     +   P   N   V 
Sbjct: 1280 AYFKVHHALLYYAAYFTVRADDFDIDTMIKGSTAIKAVMDDINSKGLDASPKEKNLLTVL 1339

Query: 827  ------------------------DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
                                    +F +  N +     +I G+GT  A +I++A  +  F
Sbjct: 1340 ELAREMCERGYSFQKVDLYRSSASEFIIDGNSLIPPFNSIPGLGTNAALNIVKARGEGEF 1399

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             S ED   R    K+++ +LE L   G L+  
Sbjct: 1400 LSKEDLQKR---GKVSKTILEYLDRHGCLEAL 1428


>gi|302872252|ref|YP_003840888.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
            OB47]
 gi|302575111|gb|ADL42902.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
            OB47]
          Length = 1402

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 189/900 (21%), Positives = 320/900 (35%), Gaps = 209/900 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +LV   +G + L +LVS  +L +   +  RI  S L ++  +GL++ +   SG I RAF
Sbjct: 582  TILVKNQQGLKNLYKLVSYSHL-EYFYKRPRIPKSLLIQL-RDGLLIGSACESGEIFRAF 639

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVN--LQRHRGYDRYRES------QVVQLAYTHELPL 211
                S+   +++  F          N       GY +  ES      ++ QL       +
Sbjct: 640  LEGKSEEEIEKIAAFYDFLEIMPVENNSFLIREGYLKDEESLREINKKIYQLGKKLGKLV 699

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            VAT+++ +          +L    H+      D     P  Y +   EM+  F  L    
Sbjct: 700  VATSDAHYCHPHQRVLRQIL---KHN---QGYDDVENDPQLYFRTTDEMLKEFEYLGRDA 753

Query: 270  ----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
                 +ENT +IA     +  +     P  IE        EEE       +  + ++ A 
Sbjct: 754  CYEVVVENTNKIADMIEDVKPIPDETFPPKIEG------AEEE-------IYNMTMKKAH 800

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
              I      +  R RL+ ELN I +  F+  +LI    +  +  +   VG  RGS   S+
Sbjct: 801  -EIYGDPLPEIVRARLEKELNSIIKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVGSSL 858

Query: 386  TAYALTITDIDPL---------RFS--------------------------------LLF 404
             A    IT+++PL         ++S                                + F
Sbjct: 859  VATMCGITEVNPLPPHYVCPNCKYSEFITDGSVGCGYDLEDKNCPRCGEKLRKDGHDIPF 918

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  D    PD D++F  D +    ++ +  +G   V +  T  ++  K A       
Sbjct: 919  ETFLGFDGDKEPDIDLNFSGDYQPIAHKFTEELFGQGYVFRAGTISTVAEKTA-----HG 973

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                Y++   L         HP                        +L +SQ   G+ R 
Sbjct: 974  FVTKYAEEKGLS-------LHPA----------------------EILRLSQGCTGVKRT 1004

Query: 525  ASTHAAGIVI--GDRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  G++I   DR +    P+     S+   +  T F+   I    L+K D LG    
Sbjct: 1005 TGQHPGGLMIVPRDREIFDFTPIQHPADSEDKSVITTHFDYHAI-SGRLLKLDILGHDDP 1063

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLES 625
            T+++     + Q    VD   IP DD +T  + T+               GT GI +  +
Sbjct: 1064 TVIR-----MLQDLTGVDPRSIPLDDKDTMSIFTSTEALGISPEDIDCEVGTFGIPEFGT 1118

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI----DPM 681
              +RQ L   +P    +++ +  L       N+   N +   +  I ++  +I    D M
Sbjct: 1119 RFVRQMLIETKPKTFAELVRISGLSHGT---NVWTNNAQDLVRNGIATLKEVISTRDDIM 1175

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLS-EADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            L   Q  +  ++    +  +  G  L  E + L RA             + +I    K  
Sbjct: 1176 LYLIQKGVPPKDSFRIMEDVRKGKGLKPEDEQLLRAHN---------VPDWYIESCKK-- 1224

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
                              Y F K+HAAAY +++++ A+ K HY   F A   T+  D+ +
Sbjct: 1225 ----------------ITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYFTVRADDFD 1268

Query: 801  --------------------KIKKFCQDARQF-------------NIQIMPPSVNTPCVD 827
                                +I    Q  +                ++  P  +N    +
Sbjct: 1269 YATILKGRDAIRQKIRDLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAE 1328

Query: 828  -FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             F + D  +     A+  VG   A+ I+EA  +  F S++D   R    KLN++V+E L 
Sbjct: 1329 RFIIKDGGLLIPFNALPNVGVAAAKSIVEARKEGRFLSVDDLQRRA---KLNKQVIEILT 1385


>gi|257487762|ref|ZP_05641803.1| error-prone DNA polymerase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 204

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 12/176 (6%)

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           ++  +ER  +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W+K H P
Sbjct: 4   LEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEP 63

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRI 835
             F  A +           +  QDAR+ +I+I P  V     D  +          +  I
Sbjct: 64  AAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDSTRNLAI 123

Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              L  ++G     AR I  A + + F    D   R     L+ R  E+L  +GAL
Sbjct: 124 RLGLRMVRGFREDDARRIETARSKRLFSDATDLSLRAG---LDARAAEALADSGAL 176


>gi|26554369|ref|NP_758303.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
 gi|26454379|dbj|BAC44707.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
          Length = 1458

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 163/830 (19%), Positives = 291/830 (35%), Gaps = 220/830 (26%)

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-- 247
            RG+      +++++A  +   +VAT+++ +L+E D    +V   V  +  V    R R  
Sbjct: 712  RGWIEDAIKRIIKIANKYNKKVVATSDTYYLNESD----EVYFRVYVNAKVLGGKRNRLF 767

Query: 248  -------VTPDHYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKE 299
                   V P +Y +   E+   FS L +  L N + +         + A I P    KE
Sbjct: 768  KYNELNTVLPKYYFRTTDELKDEFSFLNDPVLVNDIVVTNSNYIASLIDANIKPI---KE 824

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA------QDYRQRLDFELNVIARMKF 353
                       L +  + G   +L Q    K Y         D + R+D E++ +    +
Sbjct: 825  T----------LHSPHIEGASDKLKQLIYQKSYSIFGDAMNNDVKARIDREISSVIDNGY 874

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------- 399
            +  +      ++ +  +   VG  RGS   SV A+ + IT+++PL               
Sbjct: 875  AMIYWFSHLLVKQSVDDGYVVG-SRGSVGSSVAAWLVDITEVNPLEPHYICTNCKYFNFE 933

Query: 400  -------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                      ++ FE F+      +PD D++F    + +   ++
Sbjct: 934  KNVDSGFDLPESNCPKCKSKLKGDGHNIPFETFMGFKGDKIPDIDLNFSAVYQGKAHDFI 993

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            +N +G ERV +  T  +   K A           Y  V                      
Sbjct: 994  KNMFGEERVFRAGTISTTAEKTA-----------YGYVK--------------------- 1021

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS--- 551
             S F E++  +     +  I++K E + R    H  GIV+        VP  +DV     
Sbjct: 1022 -SYFEESKKMNARNAEITRIAKKCENVKRTTGQHPGGIVV--------VPHGKDVYDFTP 1072

Query: 552  -DLPVTQFNMKWIEKA--------GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
             + P       W             L+KFD LG    T+L+     +      V+   IP
Sbjct: 1073 FNYPADDKTQDWFTTHLAFESLHDSLLKFDILGHDNPTILK-----MLTEQTNVNADTIP 1127

Query: 603  FDDHETYHLLTTK----------------GTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
              D++   L  +                 G+ GI +  ++ +++ L   +P    D+I +
Sbjct: 1128 NFDNDVMDLFNSTDSLKIKNPMINKILKTGSSGIPEFGTNFVKEMLLVTKPQKFSDLIRI 1187

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
              L     + N        N K             L E +G+ I    V+     +  Y 
Sbjct: 1188 SGLSHGTNVWN-------DNAK------------YLIEEKGLTI--SDVISCRDDIMVYL 1226

Query: 707  LSEADVLRRAMGKKIKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            + +   +   +  KI E++ K K   E +    + N I         E   K + Y F K
Sbjct: 1227 IDKG--ITPIIAFKIMEDVRKGKGLNEEYQKVLNDNNIPTWY----IESCNKIS-YLFPK 1279

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI--MPPSV 821
            +HA AY +++++ AW K +YP+ F A+  ++ +  V  IK       +   +I  +   +
Sbjct: 1280 AHATAYVIMAWKIAWFKIYYPLHFYASYFSIRI-KVFDIKSILNGESEITNKINEIKEKM 1338

Query: 822  NTP---------------------------------------CVDFKVGDNRIYYSLAAI 842
              P                                         DF V  + +    +AI
Sbjct: 1339 ANPKTKALVKNKELDLIPIYELALELLGRGYKFANIDLKKSLATDFLVEGDYLIPPFSAI 1398

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             G+G + A  I++A  +K F S EDF  R      + +++E L    +L+
Sbjct: 1399 DGLGDSVATSIVKAREEKMFSSKEDFKKRTKVTTTHMKIMEELGITSSLN 1448


>gi|116495060|ref|YP_806794.1| DNA polymerase III PolC [Lactobacillus casei ATCC 334]
 gi|122263523|sp|Q038M0|DPO3_LACC3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116105210|gb|ABJ70352.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus casei
            ATCC 334]
          Length = 1444

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 170/794 (21%), Positives = 294/794 (37%), Gaps = 201/794 (25%)

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
            E P+VAT ++ +L + D     +L+   HS   +        PD + ++ SEM++ FS L
Sbjct: 728  EKPVVATGDAHYLDQHDAIYRQILI---HSQGGANPLNRHSLPDVHFRSTSEMLTDFSWL 784

Query: 268  PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
             E  E   E+    S             I    DD     +++L    V G+E  L    
Sbjct: 785  GE--EKAHELVVDNS-----------NLIANWVDDDITPVKDKLYTPEVPGVEENLKHDV 831

Query: 328  IAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
            +   +            QRLD EL  I    FS  + I    +  + K+   VG  RGS 
Sbjct: 832  MTTAHELYGDPLPDIVAQRLDKELKSIIGNGFSVIYNIAQRLVLKSNKDGYLVG-SRGSV 890

Query: 382  AGSVTAYALTITDIDPL---------RFS------------------------------- 401
              S+ A    IT+++PL         ++S                               
Sbjct: 891  GSSLAATMAGITEVNPLPPHYRCPNCQYSEFFTHGEIGSGFDLPDKQCPKCGADLHKDGH 950

Query: 402  -LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL-- 458
             + FE FL      +PD D++F  D +     Y++  +G +   +  T G++  K A   
Sbjct: 951  DIPFETFLGFHGDKVPDIDLNFSGDYQPIAHNYIKVMFGEDHSFRAGTIGTVADKTAYGY 1010

Query: 459  -----RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
                 RD G+  Q+  +++DRL                                      
Sbjct: 1011 VKAYERDTGQ--QLRGAEIDRL-------------------------------------- 1030

Query: 514  ISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGL 568
             +Q   G+ R    H AGI+I   D  +    P+     D  +    T F+   I    +
Sbjct: 1031 -AQGDTGVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTTHFDFHSIHD-NI 1088

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT-TK------------ 615
            +K D LG    T+++   D        V+   IP DD     L + TK            
Sbjct: 1089 LKMDVLGHDDPTMIRMLQDLSG-----VEPKSIPTDDPGVMALFSGTKSLGVTPEQINSK 1143

Query: 616  -GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
             GTLGI +  +  +R  LE  +P    +++ +  L       ++ + N  +  K+ IV+ 
Sbjct: 1144 MGTLGIPEFGTRFVRGMLEETKPTTFSELLQISGLSHG---TDVWLGNAEELIKQGIVT- 1199

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
                   LKE   VI  ++ +M     L  + + +      +M   I E +  +K R I 
Sbjct: 1200 -------LKE---VIGCRDNIMMD---LIHWGMED------SMAFNIMEHV--RKGRGIP 1238

Query: 735  GASKNGISKTIAVNIFELLAKFA-DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
               +  + +   V  + + +     Y F K+HA AY +++ + AW K HYP+ +  A  +
Sbjct: 1239 DDWQKAMRENENVPDWYIESCLKIKYMFPKAHATAYILMALRIAWFKVHYPLIYYTAYFS 1298

Query: 794  LEMDN----------------VEKIKKFCQDARQFNIQIMPP-SVNTPCVD--FKV---- 830
            +  ++                +++I     DA     Q++    +   C++  FK+    
Sbjct: 1299 VRAEDFDLAAMSHGKEAVKAAMKEITDKGMDASTKEKQLLTVLEIANECLERGFKIKMID 1358

Query: 831  ------------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                         D+ I     A+ G+G   A+ I+ A  +KPF S ED  +R    K++
Sbjct: 1359 VTKSDSHNFLIQDDHTILAPFRAVPGLGDNVAKQIVAAREEKPFLSKEDLANR---GKVS 1415

Query: 879  RRVLESLVFAGALD 892
            + +++ +     LD
Sbjct: 1416 KTLIDYMTTNHVLD 1429


>gi|138894778|ref|YP_001125231.1| DNA polymerase III PolC [Geobacillus thermodenitrificans NG80-2]
 gi|134266291|gb|ABO66486.1| DNA polymerase III alpha subunit [Geobacillus thermodenitrificans
            NG80-2]
          Length = 1442

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 167/810 (20%), Positives = 295/810 (36%), Gaps = 216/810 (26%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V L    ++P+VAT N  +L+ ED     +L+   HS   +        PD Y +   E
Sbjct: 725  IVALGEKLDIPVVATGNVHYLNPEDKIYRKILI---HSQGGANPLNRHELPDVYFRTTDE 781

Query: 260  MVSIFSDL--PEALENTVEIARRCSFILQVHAPI-----LPRFIEKECDDIQKEEENELR 312
            M+  FS L   +A E  V+  ++ + ++    PI      PR IE   D+I+  E +  R
Sbjct: 782  MLDCFSFLGAEKAKEIVVDNTQKIASLIGEVKPIKDDLYTPR-IEGADDEIR--EMSYRR 838

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             K + G  +             +   +RL+ EL  I    F+  +LI    ++ +  +  
Sbjct: 839  AKDIYGDPL------------PKIVEERLEKELKSIIGHGFAVIYLISHKLVKKSLDDGY 886

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPL---------------------------------- 398
             VG  RGS   S  A    IT+++PL                                  
Sbjct: 887  LVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPNCKHSEFFNDGSVGSGFDLPDKNCPQC 945

Query: 399  -------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                      + FE FL      +PD D++F  + +     Y +  +G + V +  T G+
Sbjct: 946  GTKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDNVYRAGTIGT 1005

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            +  K A           Y  V                 +  A D    E R A+  +DRL
Sbjct: 1006 VADKTA-----------YGFV-----------------KGYASDHNL-ELRGAE--IDRL 1034

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQF 558
               +    G+ R    H  GI++        VP Y ++    P+             T F
Sbjct: 1035 ---AAGCTGVKRTTGQHPGGIIV--------VPDYMEIYDFTPIQYPADDTSSEWRTTHF 1083

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--- 615
            +   I    L+K D LG    T+++   D        +D   IP DD +   + ++    
Sbjct: 1084 DFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPDVMGIFSSTEPL 1137

Query: 616  -----------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
                       GT+GI +  +  +RQ LE  +P    +++ +  L     +         
Sbjct: 1138 GVTPEQIMCNVGTIGIPEFGTRFVRQMLEETKPKTFSELVQISGLSHGTDV-------WL 1190

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             N +E I +    +  ++     +++Y   + +  +    + + E+    + +  + +EE
Sbjct: 1191 GNAQELIQNGTCTLSEVIGCRDDIMVY--LIYRGLEPSLAFKIMESVRKGKGLTPEFEEE 1248

Query: 725  MDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            M K    E +I    K                    Y F K+HAAAY +++ + A+ K H
Sbjct: 1249 MRKHDVPEWYIDSCKK------------------IKYMFPKAHAAAYVLMAVRIAYFKVH 1290

Query: 783  YPVEFLAASMTLEMDN----------------VEKIK---------------------KF 805
            +P+ + A+  T+  ++                +E+I                      + 
Sbjct: 1291 HPLLYYASYFTVRAEDFDLDAMIKGSAAIRKRIEEINAKGIQATAKEKSLLTVLEVALEM 1350

Query: 806  CQDARQF-NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            C+    F NI +      +   +F +  + +     AI G+GT  A++I+ A  +  F S
Sbjct: 1351 CERGFTFKNIDLY----RSQATEFVIDGHSLIPPFNAIPGLGTNVAQNIVRAREEGEFLS 1406

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             ED   R    K+++ +LE L   G LD  
Sbjct: 1407 KEDLQQR---GKVSKTLLEYLESRGCLDSL 1433


>gi|315653430|ref|ZP_07906352.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
 gi|315489355|gb|EFU78995.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
          Length = 1424

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 163/803 (20%), Positives = 305/803 (37%), Gaps = 201/803 (25%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
            + + +L     +P+VAT+++ ++ ++D     +L++   +     + +    PD +    
Sbjct: 704  TNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLSAQKAN----RGKNYELPDLHFYTT 759

Query: 258  SEMVSIFSDL-PE-----ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEE 308
             EM+  FS L P+      ++NT  IA +   +  + + + P  IE   KE + +  ++ 
Sbjct: 760  QEMLDAFSFLDPKIAEEIVIKNTNMIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKA 819

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            +EL    +  +                  + RL++EL  I    ++  +LI    +  + 
Sbjct: 820  HELYGNPLPKI-----------------VKDRLEYELKSIISNGYAVIYLISQRLVAKSN 862

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFER------------- 406
            K+   VG  RGS   S+ A    IT+++PL         ++S  FE+             
Sbjct: 863  KDGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKK 921

Query: 407  -------------------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                               FL      +PD D++F  D +     Y++  +G +   +  
Sbjct: 922  CPKCNADLAKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAG 981

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G++  K A           Y  V                 +   D++   E +L +  
Sbjct: 982  TIGTVADKIA-----------YGYV-----------------KHYEDEN---ELKLRNAE 1010

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKW 562
            +DRL   SQ   G+ R    H AGIV+   D  +    P+     D+ +    T F+   
Sbjct: 1011 LDRL---SQGASGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHS 1067

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    ++KFD LG    T+++     + Q    VD   IP  D     L +         
Sbjct: 1068 IHD-NILKFDILGHDDPTMIR-----MLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTP 1121

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
                   GTLG+ +  +  +R  LE  +P    +++ +  L     +             
Sbjct: 1122 EQIGVNTGTLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDV------------- 1168

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIA---QLLSGYSLSEADVLRRAMGKKIKEEM 725
              + +   LI+  + + + VI  ++ +M       +    + S  + +R   GK I +E 
Sbjct: 1169 -WLGNAEDLINKGICKLKNVIGCRDNIMTDLIHWDVPPEVAFSTMESVRH--GKGISDEN 1225

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
                   ++  SKN   K I     +   K   Y F K+HA AY +++ + AW K +YPV
Sbjct: 1226 -------MAILSKN---KNIPDWYIQSCLKIK-YMFPKAHATAYILMALRIAWFKVYYPV 1274

Query: 786  EFLAASMTLEMD----------------NVEKIKKFCQDA-------------------R 810
             +  + +++  D                 ++KI+    +A                   R
Sbjct: 1275 IYYTSYLSVRADLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLER 1334

Query: 811  QFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
              NI ++     +  ++FK+ D + I      + G+G   A+ I+ A  ++PF S ED  
Sbjct: 1335 GININMVDIE-KSDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLS 1393

Query: 870  SRVDSKKLNRRVLESLVFAGALD 892
             R    K+++ ++E     G LD
Sbjct: 1394 IR---GKVSQTIMEYFENNGVLD 1413


>gi|312873343|ref|ZP_07733396.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 2052A-d]
 gi|311091133|gb|EFQ49524.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 2052A-d]
          Length = 1420

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 163/803 (20%), Positives = 305/803 (37%), Gaps = 201/803 (25%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
            + + +L     +P+VAT+++ ++ ++D     +L++   +     + +    PD +    
Sbjct: 700  TNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLSAQKAN----RGKNYELPDLHFYTT 755

Query: 258  SEMVSIFSDL-PE-----ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEE 308
             EM+  FS L P+      ++NT  IA +   +  + + + P  IE   KE + +  ++ 
Sbjct: 756  QEMLDAFSFLDPKIAEEIVIKNTNIIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKA 815

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            +EL    +  +                  + RL++EL  I    ++  +LI    +  + 
Sbjct: 816  HELYGNPLPKI-----------------VKDRLEYELKSIISNGYAVIYLISQRLVAKSN 858

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFER------------- 406
            K+   VG  RGS   S+ A    IT+++PL         ++S  FE+             
Sbjct: 859  KDGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKK 917

Query: 407  -------------------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                               FL      +PD D++F  D +     Y++  +G +   +  
Sbjct: 918  CPKCNADLAKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAG 977

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G++  K A           Y  V                 +   D++   E +L +  
Sbjct: 978  TIGTVADKIA-----------YGYV-----------------KHYEDEN---ELKLRNAE 1006

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKW 562
            +DRL   SQ   G+ R    H AGIV+   D  +    P+     D+ +    T F+   
Sbjct: 1007 LDRL---SQGASGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHS 1063

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    ++KFD LG    T+++     + Q    VD   IP  D     L +         
Sbjct: 1064 IHD-NILKFDILGHDDPTMIR-----MLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTP 1117

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
                   GTLG+ +  +  +R  LE  +P    +++ +  L     +             
Sbjct: 1118 EQIGVNTGTLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDV------------- 1164

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIA---QLLSGYSLSEADVLRRAMGKKIKEEM 725
              + +   LI+  + + + VI  ++ +M       +    + S  + +R   GK I +E 
Sbjct: 1165 -WLGNAEDLINKGICKLKNVIGCRDNIMTDLIHWDVPPEVAFSTMESVRH--GKGISDEN 1221

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
                   ++  SKN   K I     +   K   Y F K+HA AY +++ + AW K +YPV
Sbjct: 1222 -------MAILSKN---KNIPDWYIQSCLKIK-YMFPKAHATAYILMALRIAWFKVYYPV 1270

Query: 786  EFLAASMTLEMD----------------NVEKIKKFCQDA-------------------R 810
             +  + +++  D                 ++KI+    +A                   R
Sbjct: 1271 IYYTSYLSVRADLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLER 1330

Query: 811  QFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
              NI ++     +  ++FK+ D + I      + G+G   A+ I+ A  ++PF S ED  
Sbjct: 1331 GININMVDIE-KSDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLS 1389

Query: 870  SRVDSKKLNRRVLESLVFAGALD 892
             R    K+++ ++E     G LD
Sbjct: 1390 IR---GKVSQTIMEYFENNGVLD 1409


>gi|309809542|ref|ZP_07703400.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners SPIN 2503V10-D]
 gi|308170214|gb|EFO72249.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners SPIN 2503V10-D]
          Length = 1424

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 163/803 (20%), Positives = 305/803 (37%), Gaps = 201/803 (25%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
            + + +L     +P+VAT+++ ++ ++D     +L++   +     + +    PD +    
Sbjct: 704  TNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLSAQKAN----RGKNYELPDLHFYTT 759

Query: 258  SEMVSIFSDL-PE-----ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEE 308
             EM+  FS L P+      ++NT  IA +   +  + + + P  IE   KE + +  ++ 
Sbjct: 760  QEMLDAFSFLNPKIAEEIVIKNTNIIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKA 819

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            +EL    +  +                  + RL++EL  I    ++  +LI    +  + 
Sbjct: 820  HELYGNPLPKI-----------------VKDRLEYELKSIISNGYAVIYLISQRLVAKSN 862

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFER------------- 406
            K+   VG  RGS   S+ A    IT+++PL         ++S  FE+             
Sbjct: 863  KDGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKK 921

Query: 407  -------------------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                               FL      +PD D++F  D +     Y++  +G +   +  
Sbjct: 922  CPKCNADLAKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAG 981

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G++  K A           Y  V                 +   D++   E +L +  
Sbjct: 982  TIGTVADKIA-----------YGYV-----------------KHYEDEN---ELKLRNAE 1010

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKW 562
            +DRL   SQ   G+ R    H AGIV+   D  +    P+     D+ +    T F+   
Sbjct: 1011 LDRL---SQGASGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHS 1067

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    ++KFD LG    T+++     + Q    VD   IP  D     L +         
Sbjct: 1068 IHD-NILKFDILGHDDPTMIR-----MLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTP 1121

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
                   GTLG+ +  +  +R  LE  +P    +++ +  L     +             
Sbjct: 1122 EQIGVNTGTLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDV------------- 1168

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIA---QLLSGYSLSEADVLRRAMGKKIKEEM 725
              + +   LI+  + + + VI  ++ +M       +    + S  + +R   GK I +E 
Sbjct: 1169 -WLGNAEDLINKGICKLKNVIGCRDNIMTDLIHWDVPPEVAFSTMESVRH--GKGISDEN 1225

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
                   ++  SKN   K I     +   K   Y F K+HA AY +++ + AW K +YPV
Sbjct: 1226 -------MAILSKN---KNIPDWYIQSCLKIK-YMFPKAHATAYILMALRIAWFKVYYPV 1274

Query: 786  EFLAASMTLEMD----------------NVEKIKKFCQDA-------------------R 810
             +  + +++  D                 ++KI+    +A                   R
Sbjct: 1275 IYYTSYLSVRADLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLER 1334

Query: 811  QFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
              NI ++     +  ++FK+ D + I      + G+G   A+ I+ A  ++PF S ED  
Sbjct: 1335 GININMVDIE-KSDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLS 1393

Query: 870  SRVDSKKLNRRVLESLVFAGALD 892
             R    K+++ ++E     G LD
Sbjct: 1394 IR---GKVSQTIMEYFENNGVLD 1413


>gi|16078721|ref|NP_389540.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309536|ref|ZP_03591383.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313860|ref|ZP_03595665.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. NCIB
            3610]
 gi|221318783|ref|ZP_03600077.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
            JH642]
 gi|221323055|ref|ZP_03604349.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. SMY]
 gi|118793|sp|P13267|DPO3_BACSU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|40060|emb|CAA36362.1| unnamed protein product [Bacillus subtilis]
 gi|2634030|emb|CAB13531.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp. subtilis
            str. 168]
          Length = 1437

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 190/948 (20%), Positives = 347/948 (36%), Gaps = 233/948 (24%)

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G Q   ++ +N+  +N  +   P   +++ + ST  G + L +LVS  ++     +  RI
Sbjct: 589  GIQYHDELNENMGQSNAYQRSRPYHATLLAVNST--GLKNLFKLVSLSHI-HYFYRVPRI 645

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--------KKLFGDRLY 183
              S L++   EGL++ +    G +       S +  E  + +F         +++   L 
Sbjct: 646  PRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVED-IASFYDYLEVQPPEVYRHLLE 703

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQ 242
            + L R     +   + + +L      P+VAT N  +L++ED     +L++    +  +++
Sbjct: 704  LELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIYRKILISSQGGANPLNR 763

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFI 296
             + P+V    + +   EM+  FS L E       + NT ++A     I  +   +    I
Sbjct: 764  HELPKV----HFRTTDEMLEAFSFLGEEKAKEIVVTNTQKVASLVDDIKPIKDDLYTPKI 819

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            E   ++I+  E +  R +++ G E+             +    R++ EL  I    F+  
Sbjct: 820  EGADEEIR--EMSYQRARSIYGEEL------------PEIVEARIEKELKSIIGHGFAVI 865

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------------ 398
            +LI    ++ +  +   VG  RGS   S+ A    IT+++PL                  
Sbjct: 866  YLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLPPHYVCPECQHSEFFNDG 924

Query: 399  -----------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                      + FE FL      +PD D++F  + + +   Y +
Sbjct: 925  SVGSGFDLPDKTCPHCGTPLKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPQAHNYTK 984

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G + V +  T G++  K A           Y  V                 +  A D
Sbjct: 985  VLFGEDNVYRAGTIGTVAEKTA-----------YGYV-----------------KGYAGD 1016

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
            +      +    +DRL+   Q   G+ R    H  GI++        VP Y D+    P+
Sbjct: 1017 NNLH---MRGAEIDRLV---QGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFSPI 1062

Query: 556  -------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    L+K D LG    T+++   D        +D   IP
Sbjct: 1063 QFPADATGSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIP 1116

Query: 603  FDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             DD E   +                  GTLGI +  +  +RQ LE  +P    +++ +  
Sbjct: 1117 TDDPEVMKIFQGTESLGVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISG 1176

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            L     +          N +E       LI   + E   VI  ++ +M +  +  G   S
Sbjct: 1177 LSHGTDV-------WLGNAQE-------LIHNNICELSEVIGCRDDIM-VYLIYQGLEPS 1221

Query: 709  EA----DVLRRAMG--KKIKEEMDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYG 760
             A    + +R+  G   + +EEM      + +I    K                    Y 
Sbjct: 1222 LAFKIMEFVRKGKGLTPEWEEEMKNNNVPDWYIDSCKK------------------IKYM 1263

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQ 811
            F K+HAAAY +++ + A+ K H+ + + AA  T+  D+ +          I+   +D   
Sbjct: 1264 FPKAHAAAYVLMAVRIAYFKVHHALLYYAAYFTVRADDFDIDTMIKGSTAIRAVMEDINA 1323

Query: 812  FNIQIMPPSVN-------------------------TPCVDFKVGDNRIYYSLAAIKGVG 846
              +   P   N                         +   +F +  N +     +I G+G
Sbjct: 1324 KGLDASPKEKNLLTVLELALEMCERGYSFQKVDLYRSSATEFIIDGNSLIPPFNSIPGLG 1383

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            T  A +I++A  +  F S ED   R    K+++ +LE L   G L+  
Sbjct: 1384 TNAALNIVKAREEGEFLSKEDLQKR---GKVSKTILEYLDRHGCLESL 1428


>gi|299534745|ref|ZP_07048075.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
 gi|298729833|gb|EFI70378.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
          Length = 1443

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 180/864 (20%), Positives = 323/864 (37%), Gaps = 205/864 (23%)

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL-QRHRGYDRYRES 198
            EGL++ +G S+G +       S + AEK  R   + ++    +Y  L +R+   D +   
Sbjct: 661  EGLLVGSGCSNGEVFETMMNKSPEEAEKVARFYDYIEVQPKAVYAPLIERNVVRDEWTLE 720

Query: 199  QV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
             +    V+L    + P+VAT N  +L   D     +L+       +  + +    P+ + 
Sbjct: 721  DIIRKLVKLGKKLDKPVVATGNVHYLDPTDGMFRQILIGSQGGANILNRSK---LPEVHF 777

Query: 255  KNRSEMVSIFSDL-PE-ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +   EM+  F  L P+ A E  V  A++ +  +    PI         DD+   +  E  
Sbjct: 778  RTTDEMLKEFDFLGPDLAKEVVVTNAQKVAASIGDVKPI--------KDDLYTPK-IEGS 828

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            +  V  L   +A     +    +  + R++ EL  I    F   +LI A  ++ +  +  
Sbjct: 829  DDEVTNLTYEMAHRIYGEEL-PEIVKARIEKELKSILGHGFGVIYLISAKLVKKSLADGY 887

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPL----------------------RFSLL------- 403
             VG  RGS   S+ A  + IT+++PL                       F L        
Sbjct: 888  LVG-SRGSVGSSLVATFMEITEVNPLPPHYICPSCKHSEFFDDGSVSSGFDLPNKDCTEC 946

Query: 404  ------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                        FE FL      +PD D++F  + + +   Y +  +G + V +  T G+
Sbjct: 947  GTPYKKDGQDIPFETFLGFKGDKVPDIDLNFSGEYQPQAHNYTKVLFGEDYVFRAGTIGT 1006

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS--RFREARLADPSVD 509
            +  K A           Y  V                 +  A D    FR A      VD
Sbjct: 1007 VAEKTA-----------YGYV-----------------KGYASDHNLHFRGAE-----VD 1033

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------T 556
            RL+   Q   G+ R    H  GI++        VP Y D+    PV             T
Sbjct: 1034 RLV---QGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFSPVQFPADAQDAEWRTT 1082

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT-- 614
             F+   I    ++K D LG    T+++   D        +D   IP DD     + ++  
Sbjct: 1083 HFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPVVMKIFSSPE 1136

Query: 615  ------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                         GTLGI +  +  +RQ LE  +P    +++ +  L     +       
Sbjct: 1137 SLGVTEKQIGCKTGTLGIPEFGTRFVRQMLEDTKPSTFSELVQISGLSHGTDV------- 1189

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
               N +E I +   ++  ++     +++Y   + Q  +    + + E+  +R+  GK + 
Sbjct: 1190 WLGNAQELIQNGTCVLKEVIGCRDDIMVYL--IYQGLEPSLAFKIMES--VRK--GKGLS 1243

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EE + +            ++  +     E   K   Y F K+HAAAY +++ + AW K H
Sbjct: 1244 EEFEAEM-----------LANKVPGWYIESCKKIK-YMFPKAHAAAYVLMAVRIAWFKVH 1291

Query: 783  YPVEFLAASMTLEMDN----------------VEKIKKFCQDAR----------QFNIQI 816
            +P+ + AA  T+  D+                +++I     DA           +  +++
Sbjct: 1292 FPILYYAAYFTVRADDFDLIAMVQGSQMIRARIDEINMKGLDASTKEKNLLTVLELALEM 1351

Query: 817  MPPSVNTPCVD--------FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
                ++   VD        F +  N +     AI G+GT  A+ I+ A  +  F S ED 
Sbjct: 1352 CERGMSFQKVDLYRSQASEFVIDGNSLIPPFDAIPGLGTNVAKTIVAAREEGEFLSKEDL 1411

Query: 869  CSRVDSKKLNRRVLESLVFAGALD 892
              R    ++++ ++E +   G L+
Sbjct: 1412 QQR---GRVSKTLIEYMDQLGCLE 1432


>gi|166032729|ref|ZP_02235558.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC 27755]
 gi|166027086|gb|EDR45843.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC 27755]
          Length = 1521

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 180/917 (19%), Positives = 334/917 (36%), Gaps = 200/917 (21%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +++L     G   L  L+S+ +L   G+Q  R+  S + +   EGLI+ +   +G + +A
Sbjct: 670  VIVLAKNDIGRVNLYTLISKSHLEYFGRQP-RMPKSEVLKY-REGLIIGSACEAGELYQA 727

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVN---LQRHRGYDRYRE--SQVVQLAYTH 207
                 S     R++ F      + L  +R  ++   +++ +  +  RE   ++++L    
Sbjct: 728  ILGEKSAERIARIVNFYDYLEIQPLGNNRFMIDSDRVEKVQSEEDLREINREIIRLGERF 787

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
            + P+VAT +  F+  ED     ++MA         KD  +  P  YL    EM+  F  L
Sbjct: 788  DKPVVATCDVHFMDPEDEVYRRIIMAGK-----GFKDADQQAP-LYLHTTDEMLEEFEYL 841

Query: 268  --PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR----NKAVAGLEV 321
               +A E  ++     + +++  +P+ P     +C  +  + +  LR    NKA +    
Sbjct: 842  GSAKAKEIVIDNPNMIADMVEKISPVRP----DKCPPVIPDSDKTLREICYNKAHSMYGD 897

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
             L +             +RL+ ELN I    F+  ++I    +  + ++   VG  RGS 
Sbjct: 898  PLPEIVT----------ERLERELNSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSV 946

Query: 382  AGSVTAYALTITDIDPLR------------------------------------------ 399
              S  A    IT+++PL                                           
Sbjct: 947  GSSFVATMAGITEVNPLSPHYYCPKCHYSDFESEEVRAYAGGCGWDMPDKECPVCKTRLV 1006

Query: 400  ---FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
               F + FE FL       PD D++F  D +    +Y +  +G  +  +  T G+L  K 
Sbjct: 1007 KDGFDIPFETFLGFKGNKEPDIDLNFSGDYQSNAHKYTEIIFGAGQTFRAGTIGTLADKT 1066

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A   V    +                                R  R     +DR++   Q
Sbjct: 1067 AFGYVKNYFEE-------------------------------RGTRKRTCEIDRIV---Q 1092

Query: 517  KLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKF 571
               G+ R    H  GI++      ++   P+     D+ +D+  T F+   I+   L+K 
Sbjct: 1093 GCTGIRRSTGQHPGGIIVLPHGEDINSFTPVQHPANDMTTDIITTHFDYHSIDH-NLLKL 1151

Query: 572  DFLGLKTLTLLQKSLDFLAQRGVKVDL---------SLIPFDDHETYHLLTTKGTLGIFQ 622
            D LG    T+++    +++   ++ +          + IP DD     L      LGI  
Sbjct: 1152 DILGHDDPTMIKALEAYISSPAMENEYNETDHPFVATDIPLDDQGVMSLFHDTSALGITP 1211

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
             +  G      G+     + +I +V   +P  + +++  +   +G           D  L
Sbjct: 1212 DDIGGCPVGCLGIPEFGTDFVIQMVVDTKPQTLSDLIRISGLSHG----------TDVWL 1261

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEMDKQKERFISGASKNGI 741
               Q +I   +  +  A        +  D++   + K +  EE     ER   G    G 
Sbjct: 1262 NNAQELIKSGKATISTA------ICTRDDIMTYLINKGLDSEESFTIMERVRKGTVAKGK 1315

Query: 742  SKTIAVNIFELL-----------AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             K       ++L            +   Y F K+HAAAY +++Y+ A+ K +YP+ +  A
Sbjct: 1316 CKDWPEYKKDMLEHDVPEWYIGSCEKIKYMFPKAHAAAYVMMAYRIAYCKVNYPLAYYGA 1375

Query: 791  SMTLEMD---------NVEKIKKFCQD--------------------------ARQFNIQ 815
               +  D           EK++ +  D                          AR +  +
Sbjct: 1376 YFGIRADAFSYEIMCQGKEKLQYYIDDYTRRSDSLSKKEQDTMKDMHIVQEMYARGY--E 1433

Query: 816  IMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
             +P  +       F + D ++    ++I G+G   A  + EA+ D P+ S +DF +R  +
Sbjct: 1434 FLPIDIYRAKATKFSIVDGKLMPPFSSIDGMGEKAAEAVEEAAKDGPYLSKDDFRNRTKA 1493

Query: 875  KKLNRRVLESLVFAGAL 891
             K     +  L   G L
Sbjct: 1494 SKTVVDYMADLGLLGDL 1510


>gi|291484213|dbj|BAI85288.1| DNA polymerase III PolC [Bacillus subtilis subsp. natto BEST195]
          Length = 1437

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 190/948 (20%), Positives = 347/948 (36%), Gaps = 233/948 (24%)

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G Q   ++ +N+  +N  +   P   +++ + ST  G + L +LVS  ++     +  RI
Sbjct: 589  GIQYHDELNENMGQSNAYQRSRPYHATLLAVNST--GLKNLFKLVSLSHI-HYFYRVPRI 645

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--------KKLFGDRLY 183
              S L++   EGL++ +    G +       S +  E  + +F         +++   L 
Sbjct: 646  PRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVED-IASFYDYLEVQPPEVYRHLLE 703

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQ 242
            + L R     +   + + +L      P+VAT N  +L++ED     +L++    +  +++
Sbjct: 704  LELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIYRKILISSQGGANPLNR 763

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFI 296
             + P+V    + +   EM+  FS L E       + NT ++A     I  +   +    I
Sbjct: 764  HELPKV----HFRTTDEMLEAFSFLGEEKAKEIVVTNTQKVASLVDDIKPIKDDLYTPKI 819

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            E   ++I+  E +  R +++ G E+             +    R++ EL  I    F+  
Sbjct: 820  EGADEEIR--EMSYQRARSIYGEEL------------PEIVEARIEKELKSIIGHGFAVI 865

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------------ 398
            +LI    ++ +  +   VG  RGS   S+ A    IT+++PL                  
Sbjct: 866  YLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLPPHYVCPECQHSEFFNDG 924

Query: 399  -----------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                      + FE FL      +PD D++F  + + +   Y +
Sbjct: 925  SVGSGFDLPDKTCPHCGTPLKKEGHDIPFETFLGFKGDKVPDIDLNFSGEYQPQAHNYTK 984

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G + V +  T G++  K A           Y  V                 +  A D
Sbjct: 985  VLFGEDNVYRAGTIGTVAEKTA-----------YGYV-----------------KGYAGD 1016

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
            +      +    +DRL+   Q   G+ R    H  GI++        VP Y D+    P+
Sbjct: 1017 NNLH---MRGAEIDRLV---QGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFSPI 1062

Query: 556  -------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    L+K D LG    T+++   D        +D   IP
Sbjct: 1063 QFPADATGSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIP 1116

Query: 603  FDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             DD E   +                  GTLGI +  +  +RQ LE  +P    +++ +  
Sbjct: 1117 TDDPEVMKIFQGTESLGVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISG 1176

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            L     +          N +E       LI   + E   VI  ++ +M +  +  G   S
Sbjct: 1177 LSHGTDV-------WLGNAQE-------LIHNNICELSEVIGCRDDIM-VYLIYQGLEPS 1221

Query: 709  EA----DVLRRAMG--KKIKEEMDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYG 760
             A    + +R+  G   + +EEM      + +I    K                    Y 
Sbjct: 1222 LAFKIMEFVRKGKGLTPEWEEEMKNNNVPDWYIDSCKK------------------IKYM 1263

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQ 811
            F K+HAAAY +++ + A+ K H+ + + AA  T+  D+ +          I+   +D   
Sbjct: 1264 FPKAHAAAYVLMAVRIAYFKVHHALLYYAAYFTVRADDFDIDTMIKGSTAIRAVMEDINA 1323

Query: 812  FNIQIMPPSVN-------------------------TPCVDFKVGDNRIYYSLAAIKGVG 846
              +   P   N                         +   +F +  N +     +I G+G
Sbjct: 1324 KGLDASPKEKNLLTVLELALEMCERGYSFQKVDLYRSSATEFIIDGNSLIPPFNSIPGLG 1383

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            T  A +I++A  +  F S ED   R    K+++ +LE L   G L+  
Sbjct: 1384 TNAALNIVKAREEGEFLSKEDLQKR---GKVSKTILEYLDRHGCLESL 1428


>gi|321315425|ref|YP_004207712.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
 gi|320021699|gb|ADV96685.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
          Length = 1437

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 190/948 (20%), Positives = 347/948 (36%), Gaps = 233/948 (24%)

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G Q   ++ +N+  +N  +   P   +++ + ST  G + L +LVS  ++     +  RI
Sbjct: 589  GIQYHDELNENMGQSNAYQRSRPYHATLLAVNST--GLKNLFKLVSLSHI-HYFYRVPRI 645

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--------KKLFGDRLY 183
              S L++   EGL++ +    G +       S +  E  + +F         +++   L 
Sbjct: 646  PRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVED-IASFYDYLEVQPPEVYRHLLE 703

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQ 242
            + L R     +   + + +L      P+VAT N  +L++ED     +L++    +  +++
Sbjct: 704  LELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIYRKILISSQGGANPLNR 763

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFI 296
             + P+V    + +   EM+  FS L E       + NT ++A     I  +   +    I
Sbjct: 764  HELPKV----HFRTTDEMLEAFSFLGEKKAKEIVVTNTQKVASLVDDIKPIKDDLYTPKI 819

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            E   ++I+  E +  R +++ G E+             +    R++ EL  I    F+  
Sbjct: 820  EGADEEIR--EMSYQRARSIYGEEL------------PEIVEARIEKELKSIIGHGFAVI 865

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------------ 398
            +LI    ++ +  +   VG  RGS   S+ A    IT+++PL                  
Sbjct: 866  YLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLPPHYVCPECQHSEFFNDG 924

Query: 399  -----------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                      + FE FL      +PD D++F  + + +   Y +
Sbjct: 925  SVGSGFDLPDKTCPHCGTPLKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPQAHNYTK 984

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G + V +  T G++  K A           Y  V                 +  A D
Sbjct: 985  VLFGEDNVYRAGTIGTVAEKTA-----------YGYV-----------------KGYAGD 1016

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
            +      +    +DRL+   Q   G+ R    H  GI++        VP Y D+    P+
Sbjct: 1017 NNLH---MRGAEIDRLV---QGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFSPI 1062

Query: 556  -------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    L+K D LG    T+++   D        +D   IP
Sbjct: 1063 QFPADATGSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIP 1116

Query: 603  FDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             DD E   +                  GTLGI +  +  +RQ LE  +P    +++ +  
Sbjct: 1117 TDDPEVMKIFQGTESLGVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISG 1176

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            L     +          N +E       LI   + E   VI  ++ +M +  +  G   S
Sbjct: 1177 LSHGTDV-------WLGNAQE-------LIHNNICELSEVIGCRDDIM-VYLIYQGLEPS 1221

Query: 709  EA----DVLRRAMG--KKIKEEMDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYG 760
             A    + +R+  G   + +EEM      + +I    K                    Y 
Sbjct: 1222 LAFKIMEFVRKGKGLTPEWEEEMKNNNVPDWYIDSCKK------------------IKYM 1263

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQ 811
            F K+HAAAY +++ + A+ K H+ + + AA  T+  D+ +          I+   +D   
Sbjct: 1264 FPKAHAAAYVLMAVRIAYFKVHHALLYYAAYFTVRADDFDIDTMIKGSTAIRAVMEDINA 1323

Query: 812  FNIQIMPPSVN-------------------------TPCVDFKVGDNRIYYSLAAIKGVG 846
              +   P   N                         +   +F +  N +     +I G+G
Sbjct: 1324 KGLDASPKEKNLLTVLELALEMCERGYSFQKVDLYRSSATEFIIDGNSLIPPFNSIPGLG 1383

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            T  A +I++A  +  F S ED   R    K+++ +LE L   G L+  
Sbjct: 1384 TNAALNIVKAREEGEFLSKEDLQKR---GKVSKTILEYLDRHGCLESL 1428


>gi|196247598|ref|ZP_03146300.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
 gi|196212382|gb|EDY07139.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
          Length = 1434

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 166/810 (20%), Positives = 294/810 (36%), Gaps = 216/810 (26%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V L    ++P+VAT N  +L+ ED     +L+   HS   +        PD Y +   E
Sbjct: 717  IVALGEKLDIPVVATGNVHYLNPEDKIYRKILI---HSQGGANPLNRHELPDVYFRTTDE 773

Query: 260  MVSIFSDL--PEALENTVEIARRCSFILQVHAPI-----LPRFIEKECDDIQKEEENELR 312
            M+  FS L   +A E  V+  ++ + ++    PI      PR IE   D+I+  E +  R
Sbjct: 774  MLDCFSFLGAEKAKEIVVDNTQKIASLIGEVKPIKDDLYTPR-IEGADDEIR--EMSYRR 830

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             K + G  +             +   +RL+ EL  I    F+  +LI    ++ +  +  
Sbjct: 831  AKDIYGDPL------------PKIVEERLEKELKSIIGHGFAVIYLISHKLVKKSLDDGY 878

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPL---------------------------------- 398
             VG  RGS   S  A    IT+++PL                                  
Sbjct: 879  LVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPNCKHSEFFNDGSVGSGFDLPDKNCPQC 937

Query: 399  -------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                      + FE FL      +PD D++F  + +     Y +  +G + V +  T G+
Sbjct: 938  GTKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDNVYRAGTIGT 997

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            +  K A   V                            +  A D    E R A+  +DRL
Sbjct: 998  VADKTAYGFV----------------------------KGYASDHNL-ELRGAE--IDRL 1026

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQF 558
               +    G+ R    H  GI++        VP Y ++    P+             T F
Sbjct: 1027 ---AAGCTGVKRTTGQHPGGIIV--------VPDYMEIYDFTPIQYPADDTSSEWRTTHF 1075

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--- 615
            +   I    L+K D LG    T+++   D        +D   IP DD +   + ++    
Sbjct: 1076 DFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPDVMGIFSSTEPL 1129

Query: 616  -----------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
                       GT+GI +  +  +RQ LE  +P    +++ +  L     +         
Sbjct: 1130 GVTPEQIMCNVGTIGIPEFGTRFVRQMLEETKPKTFSELVQISGLSHGTDV-------WL 1182

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             N +E I +    +  ++     +++Y   + +  +    + + E+    + +  + +EE
Sbjct: 1183 GNAQELIQNGTCTLSEVIGCRDDIMVY--LIYRGLEPSLAFKIMESVRKGKGLTPEFEEE 1240

Query: 725  MDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            M K    E +I    K                    Y F K+HAAAY +++ + A+ K H
Sbjct: 1241 MRKHDVPEWYIDSCKK------------------IKYMFPKAHAAAYVLMAVRIAYFKVH 1282

Query: 783  YPVEFLAASMTLEMDN----------------VEKIK---------------------KF 805
            +P+ + A+  T+  ++                +E+I                      + 
Sbjct: 1283 HPLLYYASYFTVRAEDFDLDAMIKGSAAIRKRIEEINAKGIQATAKEKSLLTVLEVALEM 1342

Query: 806  CQDARQF-NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            C+    F NI +      +   +F +  + +     AI G+GT  A++I+ A  +  F S
Sbjct: 1343 CERGFTFKNIDLY----RSQATEFVIDGHSLIPPFNAIPGLGTNVAQNIVRAREEGEFLS 1398

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             ED   R    K+++ +LE L   G LD  
Sbjct: 1399 KEDLQQR---GKVSKTLLEYLESRGCLDSL 1425


>gi|304404288|ref|ZP_07385950.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9]
 gi|304347266|gb|EFM13098.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9]
          Length = 1439

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 192/926 (20%), Positives = 332/926 (35%), Gaps = 255/926 (27%)

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
            A G + L +L+S  +  +  K+   I  S L E+  EGL++++G   G    +    + +
Sbjct: 620  AVGKKNLFKLISLSHT-EHFKRVACIPKSKLTEL-REGLLIISGCEKGEFFESVLNKTEE 677

Query: 166  VAEKRL----------------LTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHEL 209
             AE                   L  K L G R  +     R         VV++    + 
Sbjct: 678  EAEDVAQYYDVLEIQPVDFYMHLVEKGLVGSRAEIEEALRR---------VVRIGKKLDK 728

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
             ++AT N  +L+  D    D+   +   T  S     R  PD + +   EM+  F+ L E
Sbjct: 729  MVIATGNVHYLNPRDKVFRDI--TIQGITGFSPLKGMR-KPDAHFRTTDEMLREFAFLGE 785

Query: 270  ------ALENTVEIARRCS----FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
                   + NT E+A R      F  ++  PI           I+  EE           
Sbjct: 786  EKAFEVVVRNTNELADRFEKFDMFPSKLFTPI-----------IEGAEE----------- 823

Query: 320  EVRLAQGAIAKGYHAQDYR----QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
            E+R      AK  +  +      QRL+ EL  I    FS  +LI    ++ + ++   VG
Sbjct: 824  EIRATCYDTAKRLYGDEVPDVIVQRLEKELVPIIGYGFSANYLISERLVKKSNQDGYLVG 883

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLL-------------------------------- 403
              RGS   SV A  L I++++PL    L                                
Sbjct: 884  -SRGSVGSSVVATFLGISEVNPLPPHYLCPNTACKHSEWFLDGSIRSGFDLPNKACPNCG 942

Query: 404  -----------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
                       FE FL      +PD D++F  + +     Y +  +G + V +  T G++
Sbjct: 943  TNMKGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPIAHNYTKIMFGDKNVFRAGTIGTV 1002

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
              K A    G A +    Q                         ++R A L+        
Sbjct: 1003 AEKTAY---GFAKKYEEEQ-----------------------GKKWRGAELS-------- 1028

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFN 559
             ++    G+ R +  H  GIV+        VP Y +V    PV             T F+
Sbjct: 1029 RLASGCTGVKRSSGQHPGGIVV--------VPDYIEVEDVTPVQYPADDVNAEWKTTHFD 1080

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
                E+  L+K D LG    T+++   D        VD + IP +D +   +  +   LG
Sbjct: 1081 YHAFEE-NLLKLDILGHDDPTMMRMLQDLTG-----VDPTTIPMNDPKVMSMFNSTDALG 1134

Query: 620  IF--------------QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
            +               ++ +  +RQ LE  +P    D++ +  L        + + N ++
Sbjct: 1135 VLPQQIRSAVATYGVPEMGTKFVRQMLEETKPSTFADLLQISGLSHG---TGVWLGNAQE 1191

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
              K    +I  +I     E    +IY+  +         + ++E+    R +  +  EEM
Sbjct: 1192 LIKNNTCTIKTVIG-CRDEIMLFLIYKAGM----DAALAFKITESVRKGRGLTPEWIEEM 1246

Query: 726  DKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             + K  + +I    K                   +Y F K+HAAAY + + +TA+ K ++
Sbjct: 1247 KRCKVPQWYIDSCLK------------------IEYMFPKAHAAAYVISAVRTAFFKLYH 1288

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQ------------DARQFN--------IQIMPPSVNT 823
            P+E+ A   T+  ++ + +   CQ            + + FN        + ++  ++  
Sbjct: 1289 PIEYYATYFTVRAEDFD-LDLLCQGYDAIMRKLVEIEEKGFNATPKEKNSVSLLEMALEM 1347

Query: 824  PCVDFKVGDNRIYYS---------------LAAIKGVGTTTARHIMEASADKPFDSLEDF 868
                F      +Y S                AAI G+G   AR+I  +  D  + S+EDF
Sbjct: 1348 TARGFSFKPIDLYRSDATKFIVDGQSLIPPFAAIAGIGDNAARNIAASRDDGEYLSIEDF 1407

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCF 894
              +    K  + ++E L   G++ CF
Sbjct: 1408 QMK---SKATKTIIEVL---GSMGCF 1427


>gi|329919876|ref|ZP_08276814.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners SPIN 1401G]
 gi|328936966|gb|EGG33396.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners SPIN 1401G]
          Length = 1424

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 163/803 (20%), Positives = 305/803 (37%), Gaps = 201/803 (25%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
            + + +L     +P+VAT+++ ++ ++D     +L++   +     + +    PD +    
Sbjct: 704  TNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLSAQKAN----RGKNYELPDLHFYTT 759

Query: 258  SEMVSIFSDL-PE-----ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEE 308
             EM+  FS L P+      ++NT  IA +   +  + + + P  IE   KE + +  ++ 
Sbjct: 760  QEMLDAFSFLDPKIAEEIVIKNTNIIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKA 819

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            +EL    +  +                  + RL++EL  I    ++  +LI    +  + 
Sbjct: 820  HELYGNPLPKI-----------------VKDRLEYELKSIISNGYAVIYLISQRLVAKSN 862

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFER------------- 406
            K+   VG  RGS   S+ A    IT+++PL         ++S  FE+             
Sbjct: 863  KDGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKK 921

Query: 407  -------------------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                               FL      +PD D++F  D +     Y++  +G +   +  
Sbjct: 922  CPKCSADLAKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAG 981

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G++  K A           Y  V                 +   D++   E +L +  
Sbjct: 982  TIGTVADKIA-----------YGYV-----------------KHYEDEN---ELKLRNAE 1010

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKW 562
            +DRL   SQ   G+ R    H AGIV+   D  +    P+     D+ +    T F+   
Sbjct: 1011 LDRL---SQGASGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHS 1067

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    ++KFD LG    T+++     + Q    VD   IP  D     L +         
Sbjct: 1068 IHD-NILKFDILGHDDPTMIR-----MLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTP 1121

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
                   GTLG+ +  +  +R  LE  +P    +++ +  L     +             
Sbjct: 1122 EQIGVNTGTLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDV------------- 1168

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIA---QLLSGYSLSEADVLRRAMGKKIKEEM 725
              + +   LI+  + + + VI  ++ +M       +    + S  + +R   GK I +E 
Sbjct: 1169 -WLGNAEDLINKGICKLKNVIGCRDNIMTDLIHWDVPPEVAFSTMESVRH--GKGISDEN 1225

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
                   ++  SKN   K I     +   K   Y F K+HA AY +++ + AW K +YPV
Sbjct: 1226 -------MAILSKN---KNIPDWYIQSCLKIK-YMFPKAHATAYILMALRIAWFKVYYPV 1274

Query: 786  EFLAASMTLEMD----------------NVEKIKKFCQDA-------------------R 810
             +  + +++  D                 ++KI+    +A                   R
Sbjct: 1275 IYYTSYLSVRADLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLER 1334

Query: 811  QFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
              NI ++     +  ++FK+ D + I      + G+G   A+ I+ A  ++PF S ED  
Sbjct: 1335 GININMVDIE-KSDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLS 1393

Query: 870  SRVDSKKLNRRVLESLVFAGALD 892
             R    K+++ ++E     G LD
Sbjct: 1394 IR---GKVSQTIMEYFENNGVLD 1413


>gi|210622608|ref|ZP_03293268.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275]
 gi|210154109|gb|EEA85115.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275]
          Length = 1426

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 137/662 (20%), Positives = 243/662 (36%), Gaps = 188/662 (28%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             +RL+ ELN I    ++  ++I    +  +  +   VG  RGS   S  A    IT+++P
Sbjct: 833  EKRLNRELNSIIGNGYAVMYIIAQKLVAKSLSDGYLVG-SRGSVGSSFAATMSDITEVNP 891

Query: 398  L-----------RFSLL--------------------------------FERFLNPDRMS 414
            L           ++S                                  FE FL  +   
Sbjct: 892  LPAHYVCPNKECKYSYFYAIGEWGSGIDLPDKVCPKCGEKLIKNGHDIPFEVFLGFEGDK 951

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D++F    +  + +Y +  +G   V +  T G++  K A     + ++        
Sbjct: 952  EPDIDLNFSGSYQPVIHKYTEELFGEGHVYRAGTIGTVAEKTAFGYAKKYVE-------- 1003

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
                                     E  +  PS + +L +++   G+ R +  H  G+++
Sbjct: 1004 -------------------------ENDIEVPSAE-VLRLAEGCTGVKRTSGQHPGGVMV 1037

Query: 535  GDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTL 581
                    +P Y+DV    P+             T F+   I    ++K D LG    T+
Sbjct: 1038 --------IPDYKDVYDFTPIQYPANDVNCGVITTHFDYHSI-SGRILKLDILGHDGPTI 1088

Query: 582  LQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSG 627
            ++   D        + ++ IP DD  T  L T+               G L I +  +  
Sbjct: 1089 IRMLEDITG-----ITITDIPLDDPATMSLFTSTEALGVTPEEIDCEIGCLAIPEFGTKF 1143

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            +RQ L   +P    +++ +  L       ++ V N +   +E IV         LKE   
Sbjct: 1144 VRQMLLDTKPTTFAELVRISGLSHGT---DVWVNNAQDLVRENIVG--------LKE--- 1189

Query: 688  VIIYQEQVMQ---IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            VI  ++ +M       L    S +  + +R+  G K + E         +   +N +   
Sbjct: 1190 VISTRDDIMNYLIFKGLQPKMSFTIMESVRKGRGLKPEHE---------AAMIENNVP-- 1238

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---- 800
               + +    K   Y F K+HA AY + S++ A+ K HYP  F A   T ++++ +    
Sbjct: 1239 ---DWYINSCKKIKYMFPKAHAVAYVMTSFRLAYCKVHYPEAFYATYFTTKVEDFDADLI 1295

Query: 801  ------------KIKKFCQDARQ-----------------FNIQIMPPSV-NTPCVDFKV 830
                        +I++   DA Q                   I+I P  +  +   +F+V
Sbjct: 1296 IKGYDAIKAKKKEIEELGNDATQKEKGMYIILEVAQEMYARGIKIAPVDIYKSSATEFEV 1355

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             G   +   + A++GVG   A HI+E   +  F S EDF  R    K++R V+E+L   G
Sbjct: 1356 IGPGLLRPPMTALQGVGENAAIHIVEERENGEFISKEDFRKRT---KISRTVVETLDKHG 1412

Query: 890  AL 891
            +L
Sbjct: 1413 SL 1414


>gi|302668622|ref|YP_003833070.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
 gi|302397586|gb|ADL36488.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
          Length = 1490

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 160/790 (20%), Positives = 302/790 (38%), Gaps = 173/790 (21%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH-YLKNR 257
            ++V+L   +  P+VAT +  FL+ ED         +  + ++S K   +  P   YL+  
Sbjct: 760  KIVKLGEHYNKPVVATCDVHFLNPED--------EIYRTIILSMKKMDKEDPAPLYLRTT 811

Query: 258  SEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK---EEE 308
             EM+  F  L E       +EN+ +I   C  I  V     P  IE   + ++K   ++ 
Sbjct: 812  EEMLQEFEYLGEEKAREVVIENSNKIFDWCEKISPVRPDKCPPVIENSDELLRKICYDKM 871

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            +E+    +  +                   +RL+ EL  I    ++  ++I    +  + 
Sbjct: 872  HEMYGDPLPPI-----------------VEERLEKELKSIIGNGYAVLYIIAQKLVWKSL 914

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------------- 399
            ++   VG  RGS   S  AYA  IT+++ L                              
Sbjct: 915  EDGYLVG-SRGSVGSSFVAYAAGITEVNSLAPHYLCPECQYSEFDSEDVKKYAGNSGCDM 973

Query: 400  ----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                            F + FE FL       PD D++F  + + +  +Y +  +G    
Sbjct: 974  PDKRCPRCGALMKKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHKYTEVIFGD--- 1030

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
             Q    G++Q+ A         +  Y  V +                       F +A  
Sbjct: 1031 GQTFRAGTIQSVAD--------KTAYGYVKKY----------------------FEQAEK 1060

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS-----DLPV--T 556
               S + +  +++  +G+ R    H  GIV+   P+ + +  +  ++      D P+  T
Sbjct: 1061 TKRSAE-IERLAEGCKGVRRGTGQHPGGIVV--LPVGENIYSFTPIQHPANDMDTPIITT 1117

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             F+   I+   L+K D LG    T+++    FL      +D   +P DD     L     
Sbjct: 1118 HFDYHKIDH-NLLKLDILGHDDPTMIR----FL-NDCTGLDPKDVPLDDRLVMTLFMNTT 1171

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIH 675
             LGI   + SG +    G+     +  + +V   +P    +++  +   +G    + +  
Sbjct: 1172 ALGITPEQISGTKLGCLGLPEFGTDFAMNMVIDAKPQSFSDLIRISGLSHGTGVWLGNAK 1231

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
             LID         I  ++ +M +  +  G   SE+  +  A+ K    ++ K KE     
Sbjct: 1232 DLIDSGAATLSSCICCRDDIM-VYLIHKGLDPSESFKIMEAVRKG---KVAKGKENNWPN 1287

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              ++ + K +    +    K  +Y F K+HAAAY +++++ A+ K + P  F AA  ++ 
Sbjct: 1288 WEQDMMDKGVP-EWYMGSCKKIEYMFPKAHAAAYVMMAWRIAYFKIYIPQAFYAAWFSIR 1346

Query: 796  MD--NVEK-------IKKFCQDAR------------------------QFNIQIMPPSV- 821
                N E+       +K++ ++ R                        +  I++ P  + 
Sbjct: 1347 AKALNYERMFQGKATLKRYMEEYRKKGDALTAVEEDELMAMRLAEEMYERGIEVEPIDIY 1406

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                  FKV  ++I  SL +++ +G   A  I+EA+ + PF S +DF SR    K  + V
Sbjct: 1407 KAESRTFKVVGDKIMPSLVSLERLGEKAADQIVEAAKEGPFTSRDDFKSRT---KCPQVV 1463

Query: 882  LESLVFAGAL 891
            ++++   G L
Sbjct: 1464 VDNMTRLGLL 1473


>gi|169827163|ref|YP_001697321.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
 gi|168991651|gb|ACA39191.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
          Length = 1468

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 175/868 (20%), Positives = 318/868 (36%), Gaps = 213/868 (24%)

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL-QRHRGYDRYRES 198
            EGL++ +G S+G +       S + AE+  +   + ++    +Y  L +R+   D +   
Sbjct: 686  EGLLVGSGCSNGELFETMMNKSPEEAEQVAKFYDYIEVQPKAVYAPLIERNVVRDEWTLE 745

Query: 199  QV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
             +    V+L    + P+VAT N  +L   D     +L+       +  + +    P+ + 
Sbjct: 746  DIIRKLVKLGKKLDKPVVATGNVHYLDPTDAMFRQILVGSQGGANILNRSK---LPEVHF 802

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--KEEENELR 312
            +   EM+  F  L   L   V +                   +K  D I   K  +++L 
Sbjct: 803  RTTDEMLKEFDFLGPDLAKEVVVTNA----------------QKVADSIGDVKPIKDDLY 846

Query: 313  NKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               + G +  +        +H       +  + R++ EL  I    F   +LI A  ++ 
Sbjct: 847  TPKIEGSDDEVTNLTYEMAHHIYGEELPEIVKARIEKELKSILGHGFGVIYLISAKLVKK 906

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------RFSLL- 403
            +  +   VG  RGS   S+ A  + IT+++PL                       F L  
Sbjct: 907  SLADGYLVG-SRGSVGSSLVATFMEITEVNPLPPHYVCPNCKHSEFFDDGSVSSGFDLPN 965

Query: 404  ------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                              FE FL      +PD D++F  + + +   Y +  +G + V +
Sbjct: 966  KDCSECGTPYKKDGQDIPFETFLGFKGDKVPDIDLNFSGEYQPKAHNYTKVLFGEDYVYR 1025

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A           Y  V    K   ND            +  FR A    
Sbjct: 1026 AGTIGTVAEKTA-----------YGYV----KGYAND-----------HNLHFRGAE--- 1056

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---------- 555
              VDRL+   Q   G+ R +  H  GI++        VP Y D+    PV          
Sbjct: 1057 --VDRLV---QGCTGVKRTSGQHPGGIIV--------VPDYMDIFDFTPVQFPADAQDAE 1103

Query: 556  ---TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T F+   I    ++K D LG    T+++   D        +D   IP DD     + 
Sbjct: 1104 WRTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPVVMQIF 1157

Query: 613  TT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            ++               GTLGI +  +  +RQ LE  +P    +++ +  L     +   
Sbjct: 1158 SSPESLGVTEKQIGCKTGTLGIPEFGTRFVRQMLEDTKPSTFSELVQISGLSHGTDV--- 1214

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
                   N +E I +   ++  ++     +++Y   + Q  +    + + E+  +R+  G
Sbjct: 1215 ----WLGNAQELIHNGTCVLKEVIGCRDDIMVYL--IYQGLEPSLAFKIMES--VRK--G 1264

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K + EE + +            ++  +     E   K   Y F K+HAAAY +++ + AW
Sbjct: 1265 KGLSEEFEAEM-----------LANKVPGWYIESCKKIK-YMFPKAHAAAYVLMAVRIAW 1312

Query: 779  MKTHYPVEFLAASMTLEMDNVEKI--------------------------KKFCQDARQF 812
             K H+P+ + AA  T+  D+ + I                          +K      + 
Sbjct: 1313 FKVHFPILYYAAYFTVRADDFDLIAMVQGSQMIRARIDEINLKGLDASTKEKNLLTVMEL 1372

Query: 813  NIQIMPPSVNTPCVD--------FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
             +++    ++   VD        F +  N +     AI G+GT  A+ I+ A  D  F S
Sbjct: 1373 ALEMCERGMSFQKVDLYRSQASEFVIEGNTLIPPFDAIPGLGTNVAKTIVAAREDGEFLS 1432

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALD 892
             ED   R    ++++ ++E +   G L+
Sbjct: 1433 KEDLQQR---GRVSKTLIEYMDQLGCLE 1457


>gi|310641590|ref|YP_003946348.1| DNA polymerase iii, alpha subunit [Paenibacillus polymyxa SC2]
 gi|309246540|gb|ADO56107.1| DNA polymerase III, alpha subunit [Paenibacillus polymyxa SC2]
          Length = 1438

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 199/917 (21%), Positives = 332/917 (36%), Gaps = 241/917 (26%)

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G + L +LVS M   +  K+   I  S L E+  +GL++++G   G    A    S + A
Sbjct: 621  GKKNLYKLVS-MSHTEYFKRVPCIPKSKLSEM-RDGLLIISGCEKGEFFEAVLNKSEEEA 678

Query: 168  EK-----RLLTFKKLFGDRLYVNLQRHRGYDRYRES--QVVQLAYTHELPLVATNNSLFL 220
            E+      +L  + L      V  Q   G D  + +  +V  +    + P++AT N  +L
Sbjct: 679  EEIAQFYDVLEIQPLTMYMHLVEKQLVSGPDALKTAIRKVCDIGKRLDKPVIATGNVHYL 738

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENT 274
               D    D+ +   H        +    PD +L+   EM++ F  L E       ++NT
Sbjct: 739  ETRDKLYRDITI---HGITGFSPLKDIRKPDAHLRTTDEMLAEFEFLGEEKAYEVVVKNT 795

Query: 275  VEIARRCS----FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
             E+A R      F  ++  P+L        D   +E  N     A +     L +  +A 
Sbjct: 796  SELAERFEELELFPDKLFTPLL--------DGADEEIRNTCYETARSIYGESLPEVVVA- 846

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                     RL+ EL  I +  FS  +LI    ++ + ++   VG  RGS   SV A  L
Sbjct: 847  ---------RLEKELEPIIKYGFSANYLISERLVKKSNQDGYLVG-SRGSVGSSVVATFL 896

Query: 391  TITDIDPL-----------RFS--------------------------------LLFERF 407
             I++++PL           R S                                + FE F
Sbjct: 897  GISEVNPLPAHYICGNSECRHSEWFLDGSVPSGFDLPDKNCPNCGGKLKGEGQDIPFETF 956

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            L      +PD D++F  + +     Y +  +G + V +  T G++  K A          
Sbjct: 957  LGFKGDKVPDIDLNFSGEYQPVAHNYTKVLFGEKSVFRAGTIGTVAEKTAF-----GFAK 1011

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
             Y +                     A   ++R A L     +RL   +    G+ R    
Sbjct: 1012 KYEE---------------------AHHKKWRGAEL-----NRL---ASGCTGVKRSTGQ 1042

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFL 574
            H  GIV+        VP Y +V    PV             T F+    + A L+K D L
Sbjct: 1043 HPGGIVV--------VPDYIEVEDITPVQYPADDTSSEWKTTHFDYHAFD-ANLLKLDIL 1093

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGI 620
            G    T+++   D        VD + IP +D +   +               T   T G+
Sbjct: 1094 GHDDPTMMRMLQDLTG-----VDPTTIPMNDPKVMSMFNSTEALGVTPQQIRTPVATYGV 1148

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI-- 678
             ++ +  +RQ L   QP    D++ +  L        + + N ++  K    +I  +I  
Sbjct: 1149 PEMGTKFVRQMLVESQPSSFADLLQISGLSHG---TGVWLGNAQELIKNNTCNIKTVIGC 1205

Query: 679  --DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK--EEMDKQK--ERF 732
              D ML      +IY+      A + +G +    + +R+  G   +  EEM K K  + +
Sbjct: 1206 RDDIML-----FLIYK------AGMDAGLAFKITESVRKGKGLSAEWIEEMKKCKVPQWY 1254

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I    K                    Y F K+HAAAY + + +TA+ K ++P+E+ A   
Sbjct: 1255 IDSCLK------------------IQYMFPKAHAAAYVISAVRTAYFKLYHPIEYYATYF 1296

Query: 793  TLEMDNVEKIKKFCQ----------DARQFNIQIMPPS---------------------- 820
            ++   + + I   CQ          +  Q   Q  P                        
Sbjct: 1297 SVRAADFD-IDLCCQGYDAIARKIVEIEQLGFQAPPKEKGMLPILEMALEMTARGFSFKS 1355

Query: 821  ---VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
                 +    FKV  + +     A++G+G   AR+I  A     F S+EDF  +    K 
Sbjct: 1356 IDLYRSEATRFKVDGDSLIPPFGALQGIGDNAARNIAAAREQGEFLSVEDFQQK---SKA 1412

Query: 878  NRRVLESLVFAGALDCF 894
            ++ ++E L   G   CF
Sbjct: 1413 SKTIVEMLSQMG---CF 1426


>gi|315222325|ref|ZP_07864231.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
 gi|315188658|gb|EFU22367.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
          Length = 1456

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 115/542 (21%), Positives = 208/542 (38%), Gaps = 129/542 (23%)

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +R++ EL+ I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL
Sbjct: 855  RRIERELSSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPL 913

Query: 399  ---------RFS--------------------------------LLFERFLNPDRMSMPD 417
                     ++S                                + FE FL  D   +PD
Sbjct: 914  SPHYVCGKCQYSEFITDGSYGSGFDMPDKDCPHCGYKLSKNGQDIPFETFLGFDGDKVPD 973

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y++  R   
Sbjct: 974  IDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYNKFYR--- 1029

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                                       D  V+RL   +Q   G+ R    H  GIV+   
Sbjct: 1030 ---------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV--- 1056

Query: 538  PLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
                 +P Y DV    PV             T FN   I++  ++K D LG    T+++K
Sbjct: 1057 -----IPNYMDVYDFTPVQYPADDLTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK 1110

Query: 585  SLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
              D        +D + IP DD E   L +    LG+ Q E  G    + G+       + 
Sbjct: 1111 LQDLSG-----IDPNEIPMDDQEVMALFSGTDVLGVTQ-EQIGTPTGMLGIPEFGTNFVR 1164

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ--- 700
             +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M       
Sbjct: 1165 GMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKG 1224

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            L    + +  + +R+ M  KI    D+++  +I+   +N + +       E   K   Y 
Sbjct: 1225 LEPKMAFTIMERVRKGMWLKIS---DEERNGYIAAMKENNVPEWY----IESCGKIK-YM 1276

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            F K+HAAAY +++ + A+ K H+P+ +  A  ++              A+ F+I++M   
Sbjct: 1277 FPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR-------------AKAFDIKVMSSG 1323

Query: 821  VN 822
            ++
Sbjct: 1324 LD 1325


>gi|126654115|ref|ZP_01725933.1| DNA polymerase III PolC [Bacillus sp. B14905]
 gi|126589395|gb|EAZ83545.1| DNA polymerase III PolC [Bacillus sp. B14905]
          Length = 1443

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 175/869 (20%), Positives = 319/869 (36%), Gaps = 215/869 (24%)

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL-QRHRGYDRYRES 198
            EGL++ +G S+G +       S + AE+  +   + ++    +Y  L +R+   D +   
Sbjct: 661  EGLLVGSGCSNGELFETMMNKSPEEAEQVAKFYDYIEVQPKAVYAPLIERNVVRDEWTLE 720

Query: 199  QV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
             +    V+L    + P+VAT N  +L   D     +L+       +  + +    P+ + 
Sbjct: 721  DIIRKLVKLGKKLDKPVVATGNVHYLDPTDAMFRQILVGSQGGANILNRSK---LPEVHF 777

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--KEEENELR 312
            +   EM+  F  L   L   V +                   +K  D I   K  +++L 
Sbjct: 778  RTTDEMLKEFDFLGPDLAKEVVVTNA----------------QKVADSIGDVKPIKDDLY 821

Query: 313  NKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               + G +  +        +H       +  + R++ EL  I    F   +LI A  ++ 
Sbjct: 822  TPKIEGSDDEVTNLTYEMAHHIYGEELPEIVKARIEKELKSILGHGFGVIYLISAKLVKK 881

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------RFSLL- 403
            +  +   VG  RGS   S+ A  + IT+++PL                       F L  
Sbjct: 882  SLADGYLVG-SRGSVGSSLVATFMEITEVNPLPPHYVCPNCKHSEFFDDGSVSSGFDLPN 940

Query: 404  ------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                              FE FL      +PD D++F  + + +   Y +  +G + V +
Sbjct: 941  KDCSECGTPYKKDGQDIPFETFLGFKGDKVPDIDLNFSGEYQPKAHNYTKVLFGEDYVYR 1000

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A           Y  V    K   ND            +  FR A    
Sbjct: 1001 AGTIGTVAEKTA-----------YGYV----KGYAND-----------HNLHFRGAE--- 1031

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---------- 555
              VDRL+   Q   G+ R +  H  GI++        VP Y D+    PV          
Sbjct: 1032 --VDRLV---QGCTGVKRTSGQHPGGIIV--------VPDYMDIFDFSPVQFPADAQDAE 1078

Query: 556  ---TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T F+   I    ++K D LG    T+++   D        +D   IP DD     + 
Sbjct: 1079 WRTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPVVMQIF 1132

Query: 613  TT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            ++               GTLGI +  +  +RQ LE  +P    +++ +  L     +   
Sbjct: 1133 SSPETLGVTEKQIGCKTGTLGIPEFGTRFVRQMLEDTKPSTFSELVQISGLSHGTDV--- 1189

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
                   N +E I +   ++  ++     +++Y   + Q  +    + + E+  +R+  G
Sbjct: 1190 ----WLGNAQELIHNGTCVLKEVIGCRDDIMVYL--IYQGLEPSLAFKIMES--VRK--G 1239

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K + EE + +            ++  +     E   K   Y F K+HAAAY +++ + AW
Sbjct: 1240 KGLSEEFEAEM-----------LANKVPGWYIESCKKIK-YMFPKAHAAAYVLMAVRIAW 1287

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-------QFNIQIMPPSVN--------- 822
             K H+P+ + AA  T+  D+ + I    Q ++       + N++ +  S           
Sbjct: 1288 FKVHFPILYYAAYFTVRADDFDLI-AMVQGSQMIRARIDEINLKGLDASTKEKNLLTVME 1346

Query: 823  -------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
                               +   +F +  N +     AI G+GT  A+ I+ A  D  F 
Sbjct: 1347 LALEMCERGMSFQKVDLYRSQASEFVIEGNTLIPPFDAIPGLGTNVAKTIVAAREDGEFL 1406

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            S ED   R    ++++ ++E +   G L+
Sbjct: 1407 SKEDLQQR---GRVSKTLIEYMDQLGCLE 1432


>gi|258611758|ref|ZP_05711628.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503]
 gi|258605945|gb|EEW18553.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503]
          Length = 1144

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 189/912 (20%), Positives = 328/912 (35%), Gaps = 219/912 (24%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +   TA G + L +L++ M  ++   +  RI  S L+++  EGLI+ T  S G +  A 
Sbjct: 322  TIYAQTAVGLKNLFKLIT-MSNINYFYRVPRIPRSQLKKL-REGLIIGTACSQGELFEAM 379

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 Q AEK    +       K ++   +   L R           +V++      P+V
Sbjct: 380  MQKGMQAAEKVAEFYDFIEVQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVV 439

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE 272
            AT N  +    D     +L+   HS   +        PD + +   EM+  F+ L E   
Sbjct: 440  ATGNVHYKDPVDKIYRKILI---HSQGGANPLNRAELPDVHFRTTDEMLKEFAFLGE--- 493

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE--VRLAQGAIAK 330
                   +   I+  +A ++  ++E       K  ++EL    + G E  VR    A+A 
Sbjct: 494  ------EKAKEIVVTNANLVVDWMED-----LKPIKDELYTPKIDGAEDEVRNMSYAMAH 542

Query: 331  GYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
              + +   +    RL+ EL  I    F+  +LI    ++ +  +   VG  RGS   S  
Sbjct: 543  QLYGEKLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRGSVGSSFV 601

Query: 387  AYALTITDIDPLRFSLL-----------------------------------------FE 405
            A    IT+++PL    L                                         FE
Sbjct: 602  ATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPDKDCPHCGTPYQKEGQDIPFE 661

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA---LRDVG 462
             FL      +PD D++F  D +     Y +  +G + V +  T G++  K A   +R+  
Sbjct: 662  TFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFRAGTIGTVAEKTAFGYVRNYE 721

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            R + M                                   +    +DRL+       G+ 
Sbjct: 722  RDMNM----------------------------------TIRGAEIDRLV---AGCTGVK 744

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLI 569
            R    H  GI++        +P Y DV    PV             T F+   I    ++
Sbjct: 745  RTTGQHPGGIIV--------IPDYMDVYDFTPVQFPADATDSEWKTTHFDFHSIHD-NVL 795

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTK 615
            K D LG    T ++   D        +D   IP DD +   L               +  
Sbjct: 796  KLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPDVMKLFGSTESLGVKPADIDSKT 850

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
            GTLGI +  +  +RQ LE  +P    +++ +  L       ++ + N  +  K K   + 
Sbjct: 851  GTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG---TDVWLGNAEELIKNKTCEL- 906

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            P +     +    +IYQ        L S  +    + +R+  GK + EEM++        
Sbjct: 907  PDVIGCRDDIMVFLIYQ-------GLESSLAFKIMESVRK--GKGLTEEMEEAM------ 951

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                 ++  + +   E   K   Y F K+HAAAY +++ + A+ K HYP+ F A   T+ 
Sbjct: 952  -----MANKVPLWYIESCKKIK-YMFPKAHAAAYVLMAVRIAYFKVHYPLYFYATYFTVR 1005

Query: 796  MDNV---------EKIKKFCQD--------------------------ARQFNIQIMPPS 820
             D+          E +K   ++                          AR F+ Q +   
Sbjct: 1006 ADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQKV-DL 1064

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
              +   +F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    K+++ 
Sbjct: 1065 YKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---GKVSKT 1121

Query: 881  VLESLVFAGALD 892
            +++ +   G L+
Sbjct: 1122 IIQYMDDQGCLE 1133


>gi|227890631|ref|ZP_04008436.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
 gi|227867569|gb|EEJ74990.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
          Length = 1451

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 176/893 (19%), Positives = 331/893 (37%), Gaps = 217/893 (24%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++L  T EG + L +L S   ++    +  R+  S L++   EGLI+ +  + G +  A 
Sbjct: 626  IILAKTQEGLKNLFKLTSES-MVKYFYRVPRVPRSILEKY-REGLIVGSACADGEVFTAM 683

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
                  +A+++   +       K L+   L   L +    D   E  + +V+LA+  + P
Sbjct: 684  MQKGYTIAKQKAEFYDYLEVQPKPLYEPLLEQELVKDN--DNLEEIITNMVKLAHELDKP 741

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPE 269
            +VAT +  F+++ED     +L+   HS   +   +R +  PD + +   EM+  FS L E
Sbjct: 742  IVATGDVHFMNKEDAIYRKILI---HSQAGANPLNRLKKLPDAHFRTTDEMLEEFSFLGE 798

Query: 270  ALENTVEIARRCSFILQVH--APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
             +   + +      + ++    P+  +    + +  +++  +   N+A A     L +  
Sbjct: 799  DIAKEIVVTNPNKLVDEISEITPVKDKLYTPKMEGAEQDIHDLTMNRAHAWYGDTLPEIV 858

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                      ++RLD EL  +    FS  +LI    +  + K+   VG  RGS   S+ A
Sbjct: 859  ----------QKRLDKELKSVIGNGFSVIYLISQKLVYKSNKDGYLVG-SRGSVGSSLVA 907

Query: 388  YALTITDIDPL------------RF-----------------------------SLLFER 406
                IT+++PL             F                              + FE 
Sbjct: 908  TMTGITEVNPLPPHYRCPKCKWTHFYEKGEYGSGYDLPDKDCPNCGTELIKDGQDIPFET 967

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL      +PD D++F  D +     Y +  +G   V +  T G++  K A   V +A +
Sbjct: 968  FLGFKGNKVPDIDLNFSGDYQPIAHNYTKVLFGENNVYRAGTIGTVADKTAYGYV-KAYE 1026

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
                Q                          FR A      +DRL   ++   G+ R   
Sbjct: 1027 RDTEQ-------------------------NFRGAE-----IDRL---AKGATGVKRTTG 1053

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDF 573
             H AGI++        VP Y D+    P+             T F+   I    ++K D 
Sbjct: 1054 QHPAGILV--------VPDYMDIYDFTPIQYPADDLTAAWRTTHFDFHSIHD-NILKLDI 1104

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLG 619
            LG    T+++   D        +D   IP DD     L               ++ GTLG
Sbjct: 1105 LGHDDPTMIRMLQDLSG-----IDPKTIPTDDPGVMALFSGTDILGVTPEEIQSSTGTLG 1159

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSI 674
            + +  +  +R  LE   P    +++ +  L        G  + ++     KNG   +  +
Sbjct: 1160 VPEFGTRFVRGMLEETHPKTFAELLKISGLSHGTDVWLGNAEELI-----KNGTVTMPDV 1214

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
                D ++ +   + +  ++  +I + +               G+ I +E   Q +   +
Sbjct: 1215 IGCRDDIMMDLIHMGVESDKAFKIMEHVR-------------KGRGIPDEW--QADMRAA 1259

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               +  I   + +           Y F K+HAAAY +++ + A+ K +YP+ + AA  ++
Sbjct: 1260 DVPEWYIGACLKIK----------YMFPKAHAAAYVLMALRIAYFKVYYPLVYYAAYFSV 1309

Query: 795  EMDNVEKI-----KKFCQDARQF-------------NI--------QIMPPSVNTPCVDF 828
              D+ + +     K+  ++A +              N+        +++    +   VD 
Sbjct: 1310 RADDFDLVSMSRGKEAVKNAMELINSKGNEATTKEKNLLTVLEIANEMLERGFDFSMVDI 1369

Query: 829  KVGDNR----------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
               D +          +     AI G+G   A+ I+ A  ++ F S ED   R
Sbjct: 1370 NKSDAQNWTIQEDGRTLLAPFTAIPGLGLNVAKQIVAAREEQEFISKEDLSKR 1422


>gi|323340059|ref|ZP_08080325.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
 gi|323092565|gb|EFZ35171.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
          Length = 1448

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 187/890 (21%), Positives = 328/890 (36%), Gaps = 213/890 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++L  T +G + L +L S   +++   +  R+  S L++   EGL++ +G + G +  A 
Sbjct: 622  IVLAKTQDGLKNLFKLASDS-MVNHFYRVARVPRSVLEKY-REGLLVGSGCADGEVFTAM 679

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 + A+ +   +       K L+   L   L +           +V+LA   + P+V
Sbjct: 680  MQKGYETAKAKAKNYDYLEIQPKALYAPLLERELVKDEEELEDIIKNMVKLAEELDKPIV 739

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPRVTPDHYLKNRSEMVSIFSDL-PEA 270
            A+ +  F+++ED     +L+   HS   +   +R +  PD + +   EM+  F+ L PE 
Sbjct: 740  ASGDVHFMNKEDAIYRKILI---HSQGGANPLNRLKNLPDAHFRTTDEMLDEFAFLGPEL 796

Query: 271  LENTV-----EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
             +  V     ++A  C  I  V   +    +    DDI+    N   NKA       L +
Sbjct: 797  AKKVVVDDPNKVAAMCDEITPVKDKLYTPKMPGAEDDIR----NLTMNKAHELYGDPLPE 852

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
               A          RLD EL  +    FS  +LI    +  + K+   VG  RGS   S+
Sbjct: 853  IVQA----------RLDKELKSVIGNGFSVIYLIAQKLVFKSNKDGYLVG-SRGSVGSSL 901

Query: 386  TAYALTITDIDPL---------RFS--------------------------------LLF 404
             A    IT+++PL         ++S                                + F
Sbjct: 902  VATMTGITEVNPLPPHYRCPECKYSEFFTKGEYGSGYDLPDKKCPKCQTQLVKDGQEIPF 961

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL      +PD D++F  D +     Y +  +G   V +  T G++  K A       
Sbjct: 962  ETFLGFKGNKVPDIDLNFSGDYQPVAHNYTKVLFGENNVFRAGTIGTVADKTA------- 1014

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                Y  V                        R  E  L    VDRL   ++   G+ R 
Sbjct: 1015 ----YGYVKAY--------------------ERDNELTLRSAEVDRL---AKGATGVKRT 1047

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKF 571
               H AGI++        VP Y D+    P+             T F+   I    ++K 
Sbjct: 1048 TGQHPAGILV--------VPDYMDIYDFTPIQYPADDVNAAWRTTHFDFHSIHD-NILKL 1098

Query: 572  DFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGT 617
            D LG    T+++   D        ++   IP DD     L               +  GT
Sbjct: 1099 DCLGHDDPTMIRMLQDLSG-----IEPKTIPTDDPGVMALFSGTEILGVTEEQIQSKTGT 1153

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            LGI +  +  +R  LE  +P    +++ +  L       ++ + N  +  + K V++   
Sbjct: 1154 LGIPEFGTRFVRGMLEETKPKTFAELLKISGLSHGT---DVWLGNAEELIQNKTVTM--- 1207

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK--ERFISG 735
              P +   +  I+     M +   L+ + + E     R +  + +EEM K    E +I  
Sbjct: 1208 --PEVIGCRDDIMMDLIHMGVESDLA-FKIMEHVRKGRGIPDEWQEEMHKANVPEWYIGA 1264

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              K                    Y F K+HAAAY +++ + A+ K +YP+ + +A  ++ 
Sbjct: 1265 CLK------------------IKYMFPKAHAAAYVLMALRIAYFKVYYPLIYYSAYFSVR 1306

Query: 796  MDNV---------EKIKKFCQD---------ARQFNI--------QIMPPSVNTPCVDFK 829
             D+          E +K   ++         A++ N+        +++        VD K
Sbjct: 1307 ADDFDLVAMANGKESVKARMKEINEKGNDVSAKEKNLLTVLELANEMLERGFEFKMVDIK 1366

Query: 830  VGD--------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              D        N +    +AI G+G   A+ I+ A  ++ F S +D   R
Sbjct: 1367 RSDASDWLIEGNTLLAPFSAIPGLGLNVAKQIVAAREEREFISKQDLKER 1416


>gi|296330873|ref|ZP_06873348.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
            6633]
 gi|305674391|ref|YP_003866063.1| DNA polymerase III subunit alpha [Bacillus subtilis subsp. spizizenii
            str. W23]
 gi|296151878|gb|EFG92752.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
            6633]
 gi|305412635|gb|ADM37754.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp.
            spizizenii str. W23]
          Length = 1437

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 191/947 (20%), Positives = 343/947 (36%), Gaps = 231/947 (24%)

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G Q   ++ +N+  +N  +   P   +++ + ST  G + L +LVS  ++     +  RI
Sbjct: 589  GIQYHDELNENMGQSNAYQRSRPYHATLLAVNST--GLKNLFKLVSLSHI-HYFYRVPRI 645

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-------FGDRLYV 184
              S L++   EGL++ +    G +       S +  E     +  L       +   L +
Sbjct: 646  PRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDVASFYDYLEVQPPEVYRHLLEL 704

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQK 243
             L R     +   + + +L      P+VAT N  +L++ED     +L++    +  +++ 
Sbjct: 705  ELVRDEKSLKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIYRKILISSQGGANPLNRH 764

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIE 297
            + P+V    + +   EM+  FS L E       + NT ++A     I  +   +    IE
Sbjct: 765  ELPKV----HFRTTDEMLEAFSFLGEEKAKEIVVTNTQKVASLIDDIKPIKDDLYTPKIE 820

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               ++I+  E +  R +++ G ++             +    R++ EL  I    F+  +
Sbjct: 821  GADEEIR--EMSYQRARSIYGEQL------------PEIVEARIEKELKSIIGHGFAVIY 866

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------------- 398
            LI    ++ +  +   VG  RGS   S+ A    IT+++PL                   
Sbjct: 867  LISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLPPHYVCSECQHSEFFNDGS 925

Query: 399  ----------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + + +   Y + 
Sbjct: 926  VGSGFDLPDKICPHCGTPLKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPQAHNYTKV 985

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A           Y  V                 +  A D 
Sbjct: 986  LFGEDNVYRAGTIGTVAEKTA-----------YGYV-----------------KGYAGDH 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV- 555
                  +    VDRL+   Q   G+ R    H  GI++        VP Y D+    P+ 
Sbjct: 1018 NLH---MRGAEVDRLV---QGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFSPIQ 1063

Query: 556  ------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
                        T F+   I    L+K D LG    T+++   D        +D   IP 
Sbjct: 1064 FPADATGSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPT 1117

Query: 604  DDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            DD E   +                  GTLGI +  +  +RQ LE  +P    +++ +  L
Sbjct: 1118 DDPEVMKIFQGTESLGVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGL 1177

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
                 +          N +E       LI   + E   VI  ++ +M +  +  G   S 
Sbjct: 1178 SHGTDV-------WLGNAQE-------LIHNNICELSEVIGCRDDIM-VYLIYQGLEPSL 1222

Query: 710  A----DVLRRAMG--KKIKEEMDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            A    + +R+  G   + +EEM      + +I    K                    Y F
Sbjct: 1223 AFKIMEFVRKGKGLTPEWEEEMKNNNVPDWYIDSCKK------------------IKYMF 1264

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQF 812
             K+HAAAY +++ + A+ K H+ + + AA  T+  D+ +          IK   +D    
Sbjct: 1265 PKAHAAAYVLMAVRIAYFKVHHALLYYAAYFTVRADDFDIDTMIKGSTAIKAVMEDINSK 1324

Query: 813  NIQIMPPSVN-------------------------TPCVDFKVGDNRIYYSLAAIKGVGT 847
             +   P   N                         +   +F +  N +     +I G+GT
Sbjct: 1325 GLDASPKEKNLLTVLELALEMCERGYSFQKVDLYRSSATEFIIDGNSLIPPFNSIPGLGT 1384

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              A +I++A  +  F S ED   R    K+++ +LE L   G L+  
Sbjct: 1385 NAALNIVKAREEGEFLSKEDLQKR---GKVSKTILEYLDRHGCLESL 1428


>gi|90961543|ref|YP_535459.1| DNA polymerase III PolC [Lactobacillus salivarius UCC118]
 gi|122449173|sp|Q1WUF9|DPO3_LACS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|90820737|gb|ABD99376.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118]
          Length = 1444

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 176/893 (19%), Positives = 331/893 (37%), Gaps = 217/893 (24%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++L  T EG + L +L S   ++    +  R+  S L++   EGLI+ +  + G +  A 
Sbjct: 619  IILAKTQEGLKNLFKLTSES-MVKYFYRVPRVPRSILEKY-REGLIVGSACADGEVFTAM 676

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
                  +A+++   +       K L+   L   L +    D   E  + +V+LA+  + P
Sbjct: 677  MQKGYTIAKQKAEFYDYLEVQPKPLYEPLLEQELVKDN--DNLEEIITNMVKLAHELDKP 734

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPE 269
            +VAT +  F+++ED     +L+   HS   +   +R +  PD + +   EM+  FS L E
Sbjct: 735  IVATGDVHFMNKEDAIYRKILI---HSQAGANPLNRLKKLPDAHFRTTDEMLEEFSFLGE 791

Query: 270  ALENTVEIARRCSFILQVH--APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
             +   + +      + ++    P+  +    + +  +++  +   N+A A     L +  
Sbjct: 792  DIAKEIVVTNPNKLVDEISEITPVKDKLYTPKMEGAEQDIHDLTMNRAHAWYGDTLPEIV 851

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                      ++RLD EL  +    FS  +LI    +  + K+   VG  RGS   S+ A
Sbjct: 852  ----------QKRLDKELKSVIGNGFSVIYLISQKLVYKSNKDGYLVG-SRGSVGSSLVA 900

Query: 388  YALTITDIDPL------------RF-----------------------------SLLFER 406
                IT+++PL             F                              + FE 
Sbjct: 901  TMTGITEVNPLPPHYRCPKCKWTHFYEKGEYGSGYDLPDKDCPNCGTELIKDGQDIPFET 960

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL      +PD D++F  D +     Y +  +G   V +  T G++  K A   V +A +
Sbjct: 961  FLGFKGNKVPDIDLNFSGDYQPIAHNYTKVLFGENNVYRAGTIGTVADKTAYGYV-KAYE 1019

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
                Q                          FR A      +DRL   ++   G+ R   
Sbjct: 1020 RDTEQ-------------------------NFRGAE-----IDRL---AKGATGVKRTTG 1046

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDF 573
             H AGI++        VP Y D+    P+             T F+   I    ++K D 
Sbjct: 1047 QHPAGILV--------VPDYMDIYDFTPIQYPADDLTAAWRTTHFDFHSIHD-NILKLDI 1097

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLG 619
            LG    T+++   D        +D   IP DD     L               ++ GTLG
Sbjct: 1098 LGHDDPTMIRMLQDLSG-----IDPKTIPTDDPGVMALFSGTDILGVTPEEIQSSTGTLG 1152

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSI 674
            + +  +  +R  LE   P    +++ +  L        G  + ++     KNG   +  +
Sbjct: 1153 VPEFGTRFVRGMLEETHPKTFAELLKISGLSHGTDVWLGNAEELI-----KNGTVTMPDV 1207

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
                D ++ +   + +  ++  +I + +               G+ I +E   Q +   +
Sbjct: 1208 IGCRDDIMMDLIHMGVESDKAFKIMEHVR-------------KGRGIPDEW--QADMRAA 1252

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               +  I   + +           Y F K+HAAAY +++ + A+ K +YP+ + AA  ++
Sbjct: 1253 DVPEWYIGACLKIK----------YMFPKAHAAAYVLMALRIAYFKVYYPLVYYAAYFSV 1302

Query: 795  EMDNVEKI-----KKFCQDARQF-------------NI--------QIMPPSVNTPCVDF 828
              D+ + +     K+  ++A +              N+        +++    +   VD 
Sbjct: 1303 RADDFDLVSMSRGKEAVKNAMELINSKGNEATTKEKNLLTVLEIANEMLERGFDFSMVDI 1362

Query: 829  KVGDNR----------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
               D +          +     AI G+G   A+ I+ A  ++ F S ED   R
Sbjct: 1363 NKSDAQNWTIQEDGRTLLAPFTAIPGLGLNVAKQIVAAREEQEFISKEDLSKR 1415


>gi|317056777|ref|YP_004105244.1| DNA polymerase III subunit alpha [Ruminococcus albus 7]
 gi|315449046|gb|ADU22610.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7]
          Length = 1500

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 192/916 (20%), Positives = 338/916 (36%), Gaps = 199/916 (21%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++LV    G + L +L+S   L    K+  RI  S L ++  EGLI+ +    G + +A+
Sbjct: 646  IILVRNNIGLKNLYKLISDSNL-KYFKRRPRIPKSELTKL-REGLIVGSACERGEVIQAY 703

Query: 160  FFNSSQVAEKRLLTFKKLF-----GDRLYVNLQRHRGYDRYRESQ--------VVQLAYT 206
              N      K++  F         G+ +++       YDR +  +        +V+L   
Sbjct: 704  LENKPYEYIKQIAAFYDYLEIQPDGNNMFMLTAEKPPYDRIKTVEDVKDINRFIVKLGED 763

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
              +P+ AT +  FL++ED +   ++ A   S   S  D        YLK+ ++M+   S 
Sbjct: 764  LGIPVCATGDVHFLNKEDAKFRAIIQA---SMGFSDCDNQAPL---YLKSTTQMLEELSY 817

Query: 267  LPE------ALENTVEIARRCSFILQVHAPI--LPRFIEKECDDIQ---KEEENELRNKA 315
            L E       + NT  +A      LQ   P+     FIE    ++Q     +  EL    
Sbjct: 818  LGEDKAFEVVVTNTNNVADMIDADLQAF-PVGTYTPFIEGAVYELQIICWRKACELYGDC 876

Query: 316  -VAGLEVRLAQGAIAKGYHAQDYR----QRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                +EV   +      Y  +       +RL  EL+ I +  FS  ++I    + ++ + 
Sbjct: 877  DPMSIEVPEGEDVDVSAYFEEHVHPLVFKRLKRELDSIIKHGFSVLYMISQKLVAYSNEC 936

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------- 399
               VG  RGS   S  A    I++++PL                                
Sbjct: 937  GYQVG-SRGSVGSSFVASMSGISEVNPLEPHYICRKCHYSEFFENGEYGSGFDLPPKDCP 995

Query: 400  ----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                        + FE FL  D    PD D++F  D + +V +Y +  +G + V +  T 
Sbjct: 996  NCGIPMHRDGHKIPFETFLGFDGDKAPDIDLNFSGDCQGKVHKYTEELFGQDHVFKAGTI 1055

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++  K A   V + L                             D R + A  A+  + 
Sbjct: 1056 GTVADKTAYGYVRKYL-----------------------------DERGKTANAAE--IQ 1084

Query: 510  RLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIE 564
            RL+     ++   R  S H  G+V+  GD  +    P+      V SD+  T F+   + 
Sbjct: 1085 RLVNGCVDVK---RTTSQHPGGMVVIPGDYEVYDFTPVQHPADKVDSDMVTTHFDFHSLH 1141

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT---------- 614
               ++K D LG    T+ +   DF       ++++  P  D   Y L T+          
Sbjct: 1142 DT-ILKLDELGHDVPTMYKYLEDF-----THMNINDCPMSDPAVYSLFTSPDSLGVTAED 1195

Query: 615  ----KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
                 GTLGI ++ +  +R  L   +P    D++ +  L     +          N +E 
Sbjct: 1196 IKCETGTLGIPEMGTPFVRGMLLESKPKNFSDLLQISGLSHGTDV-------WLGNAQEL 1248

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I +    I  ++     +++Y  +      L    +    ++ R+    K+  E  KQ  
Sbjct: 1249 IKNGTCDISNVIGTRDSIMVYLLE----HHLEPKLAFKIMEITRKGKAPKLLTEEMKQDM 1304

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            R      +  I   + +           Y F K+HAAAY   + +  W K H P+ F A 
Sbjct: 1305 R-AHDVPEWYIDSCLKIK----------YMFPKAHAAAYVTAAIRLCWFKVHEPLAFYAT 1353

Query: 791  SMTLE----------------MDNVEKIKKFCQDARQF------------------NIQI 816
              T+                  D ++++    +D R                      + 
Sbjct: 1354 YFTVRGEDFDAETTLKGIYMVRDKIDRLNNMSKDERSGKDSGVLDMLMLTNEMMSRGYEF 1413

Query: 817  MPPSVN-TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            +P  +N +    +++ D +I     AI GVG   A  I E +    F S+E+F  +++S 
Sbjct: 1414 LPIDINKSHAYIYEIEDGKIRLPFVAINGVGLNAALAIYEKAKKNDFISIEEF--QMNS- 1470

Query: 876  KLNRRVLESLVFAGAL 891
             +++ V+E+L   GA 
Sbjct: 1471 GISKTVIEALENIGAF 1486


>gi|293115337|ref|ZP_05790986.2| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
 gi|292810483|gb|EFF69688.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
          Length = 1476

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 180/907 (19%), Positives = 326/907 (35%), Gaps = 214/907 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++L  +  G   L  L+S  +L    ++  RI  S +++   +GLI+ +   +G + +A 
Sbjct: 645  IILADSEVGRVNLYRLISLSHLTYFNRRP-RIPKSEVEKY-RDGLILGSACEAGELYQAI 702

Query: 160  FFNSSQVAEKRL------LTFKKLFGDRLYVNLQRHRGYDRYRE-----SQVVQLAYTHE 208
               +++    RL      L  + +  +R  +  QR       ++      ++V L     
Sbjct: 703  LNGNTEEEIARLANYYDYLEIQPVGNNRFMIESQRLPQIKSEQDIIDINKKIVALGEKFN 762

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT +  FL+ ED E +  ++        +    P      +L+   EM+  F  L 
Sbjct: 763  KPVVATCDVHFLNPED-EVYRRIIMKGQGFDDADNQAPL-----FLRTTEEMLEEFKYLG 816

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECD----DIQKEEENELRNKAVAG 318
            E       + NT  IA  C +I  V     P  I   CD    DI     +E+    +  
Sbjct: 817  EDKAYEVVVTNTRLIADLCEYIEPVRPDKCPPVIPN-CDQTLRDICYNRAHEMYGPKLPE 875

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            +                    RL+ ELN I    +S  ++I    +  + ++   VG  R
Sbjct: 876  I-----------------VESRLEKELNSIISNGYSVMYIIAQKLVWKSNEDGYLVG-SR 917

Query: 379  GSGAGSVTAYALTITDIDPLR--------------------------------------- 399
            GS   S  A    +T+++PL                                        
Sbjct: 918  GSVGSSFVATMSGVTEVNPLSPHYLCPECYYVDFDSDEVRKFAGGAGCDMPDKICPKCGA 977

Query: 400  ------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
                  F + FE FL  +    PD D++F  + + +   YV+  +G  +  +  T G+L 
Sbjct: 978  KLKKEGFDIPFETFLGFNGDKEPDIDLNFSGEYQAKAHAYVEVIFGEGQTYKAGTVGTLA 1037

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             K     V +  +    +  R C++                       R+ +  V     
Sbjct: 1038 DKTVYGYVKKYYEEK-GERKRSCEI----------------------NRIVNGGV----- 1069

Query: 514  ISQKLEGLYRHASTHAAGIVI---GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAG 567
                  G+ R    H  GI++   G+  +    P+     D+ +++  T F+   I+   
Sbjct: 1070 ------GVKRSTGQHPGGIIVLPYGEE-IHSFTPIQHPANDMTTNIVTTHFDYHSIDH-N 1121

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------- 612
            L+K D LG    T+++     + Q   K+D + IP D  E   L                
Sbjct: 1122 LLKLDILGHDDPTMIR-----MLQDLTKLDPTHIPLDSPEVMSLFQSTEALKINPEDIGG 1176

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            T  G LGI +  +    Q L    P    D++ +  L     +          N +  I 
Sbjct: 1177 TKLGCLGIPEFGTDFAMQMLIDTNPQHFSDLVRIAGLSHGTDV-------WLGNAQTLIE 1229

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
                 I   +     ++IY    +    + +G S    + +R+  GK +K E     E  
Sbjct: 1230 EGKATISTAICTRDDIMIY----LINMGIEAGTSFKIMESVRK--GKGLKPEW----EEL 1279

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            +  A           + +    K   Y F K+HAAAY +++++ A+ K  YP+E+ A+  
Sbjct: 1280 MVNAG--------VPDWYIWSCKKIKYMFPKAHAAAYVMMAWRIAYCKVFYPLEYYASYF 1331

Query: 793  TLEMDNV---------EKIKKFCQDARQFN------------------------IQIMPP 819
            ++  D+          +K+ ++ +D ++ N                           MP 
Sbjct: 1332 SIRADDFSYRIMCFGKDKLDEYIEDYKRRNDSLTNKEQGQLKDMRIVQEMYARGFDFMPI 1391

Query: 820  SV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
             +  +   +F++ D R+     +I G+G T A  I EA+    F S+EDF  +    K +
Sbjct: 1392 DLYKSHSRNFQIVDGRLLPPFKSIDGLGETAADSIYEAAKCGKFLSVEDFIDKAKVPKTS 1451

Query: 879  RRVLESL 885
              V+  L
Sbjct: 1452 AAVMVEL 1458


>gi|331701344|ref|YP_004398303.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929]
 gi|329128687|gb|AEB73240.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929]
          Length = 1439

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 196/923 (21%), Positives = 334/923 (36%), Gaps = 237/923 (25%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            +LL  T  G + + ++VS +  +    +  R+  + L++   +GLI+ +  SSG +  A 
Sbjct: 614  ILLAKTQAGLKNMFKIVS-LSNVKYFYRVPRVPRTQLEKY-RDGLIVGSACSSGEVFTAM 671

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRES--------------QVVQLAY 205
                    +K L   ++  G   Y+ +Q  R Y    ES               +V+L  
Sbjct: 672  M-------QKGLDEARQKAGFYDYLEVQPKRAYAPLIESGLIADDENLEQILTNMVKLGD 724

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
              + P+VAT +  +L+ +DY    +L+   +S   +     +  PD +     EM+S F+
Sbjct: 725  ELDKPVVATGDVHYLNPQDYIYRKILI---NSQGGANPLNRQELPDLHFLTTDEMLSDFN 781

Query: 266  DL-PEALE-----NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
             L PE  E     NT +IA     I  VH P+  +      +  + E ++   + A A  
Sbjct: 782  FLGPEKAEEIVVDNTNQIADE---IEDVH-PLKDKLYTPRMEGAEDEIKSRTMDTAHAWY 837

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
               L +              RLD EL  I    FS  +LI    +  + K+   VG  RG
Sbjct: 838  GDPLPKIV----------SDRLDKELKSIIGNGFSVIYLIAQRLVAKSNKDGYLVG-SRG 886

Query: 380  SGAGSVTAYALTITDIDPL----------------------------------------- 398
            S   S+ A    IT+++PL                                         
Sbjct: 887  SVGSSLVATLTGITEVNPLPPHYRCPNCQHTEFFTKGEYSSGYDLPHKKCPKCGTMMIGD 946

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
              ++ FE FL      +PD D++F  D +     Y +  +G + V +  T G++  K A 
Sbjct: 947  GHNIPFETFLGFTGNKVPDIDLNFSGDYQPIAHNYTKVLFGEKNVFRAGTIGTVADKTAY 1006

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V +A +    +V R  +                      E RLA  +           
Sbjct: 1007 GYV-KAYERDKGEVYRQAE----------------------EDRLAKGAT---------- 1033

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEK 565
             G+ R    H AGI++        VP Y D+    P+             T F+   I  
Sbjct: 1034 -GVKRTTGQHPAGIIV--------VPDYMDIYDFTPIQYPADDQDAAWQTTHFDFHSIHD 1084

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT----------- 614
              ++K D LG    T+++   D        +D   IP DD     + ++           
Sbjct: 1085 -NILKIDILGHDDPTMIRMLQDLSG-----IDPKTIPMDDPGVMSIFSSPKILGVTEDQI 1138

Query: 615  ---KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP-----GPIDNIVVYNNRKN 666
                GTLG+ +  +  +R  LE   P    +++ +  L        G  D ++     KN
Sbjct: 1139 QSKTGTLGVPEFGTRFVRGMLEQTHPSNYSELLQISGLSHGTDVWMGNADELI-----KN 1193

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G   I ++    D ++ +     +  E   QI + +            R +    + EM 
Sbjct: 1194 GTATIANVIGCRDNIMTDLINWGLDSELSFQIMESVRH---------GRGIPDDWQAEMK 1244

Query: 727  KQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            K K  + +I    K                    Y F ++HAAAY +++ + A+ K ++P
Sbjct: 1245 KAKIPDWYIQSCLK------------------IKYMFPRAHAAAYILMALRIAYFKVYFP 1286

Query: 785  VEFLAASMTLEMDNVEKI-----KKFCQDA-RQFNIQIMPPSVNTP-------------- 824
            + + A+  ++  D+ + +     K+  ++A R  N + M  S                  
Sbjct: 1287 MVYYASYFSVRADDFDIVSMCRGKEAVKNAMRMINDKGMEASTKEKNLLTVLELANEMLE 1346

Query: 825  ------CVDFKVGD--------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
                   VD    D        + +     ++ G+G   A+ I+ A  DKPF S ED   
Sbjct: 1347 RGYHFQMVDLDKSDASQWLIDGDTLIAPFNSVPGLGLNVAKQIVAAREDKPFISKEDLAK 1406

Query: 871  RVD-SKKLNRRVLESLVFAGALD 892
            R   SK L   + E+ V AG  D
Sbjct: 1407 RGKVSKTLIDFMTENNVLAGLPD 1429


>gi|325913471|ref|ZP_08175837.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners UPII 60-B]
 gi|325477240|gb|EGC80386.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners UPII 60-B]
          Length = 1424

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 163/804 (20%), Positives = 303/804 (37%), Gaps = 203/804 (25%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
            + + +L     +P+VAT+++ ++ ++D     +L++   +     + +    PD +    
Sbjct: 704  TNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLSAQKAN----RGKNYELPDLHFYTT 759

Query: 258  SEMVSIFSDL-PE-----ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEE 308
             EM+  FS L P+      ++NT  IA +   +  + + + P  IE   KE + +  ++ 
Sbjct: 760  QEMLDAFSFLDPKIAEEIVIKNTNIIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKA 819

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            +EL    +  +                  + RL++EL  I    ++  +LI    +  + 
Sbjct: 820  HELYGNPLPKI-----------------VKDRLEYELKSIISNGYAVIYLISQRLVAKSN 862

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFER------------- 406
            K+   VG  RGS   S+ A    IT+++PL         ++S  FE+             
Sbjct: 863  KDGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKK 921

Query: 407  -------------------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                               FL      +PD D++F  D +     Y++  +G +   +  
Sbjct: 922  CPKCNADLAKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAG 981

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G++  K A           Y  V                 +   D++   E +L +  
Sbjct: 982  TIGTVADKIA-----------YGYV-----------------KHYEDEN---ELKLRNAE 1010

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKW 562
            +DRL   SQ   G+ R    H AGIV+   D  +    P+     D+ +    T F+   
Sbjct: 1011 LDRL---SQGASGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHS 1067

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    ++KFD LG    T+++     + Q    VD   IP  D     L +         
Sbjct: 1068 IHD-NILKFDILGHDDPTMIR-----MLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTP 1121

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
                   GTLG+ +  +  +R  LE  +P    +++ +  L     +             
Sbjct: 1122 EQIGVNTGTLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDV------------- 1168

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIA---QLLSGYSLSEADVLRRAMGKKIKEEM 725
              + +   LI+  + + + VI  ++ +M       +    + S  + +R   GK I +E 
Sbjct: 1169 -WLGNAEDLINKGICKLKNVIGCRDNIMTDLIHWDVPPEVAFSTMESVRH--GKGISDEN 1225

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
                   ++  SKN   K I     +   K   Y F K+HA AY +++ + AW K +YPV
Sbjct: 1226 -------MAILSKN---KNIPDWYIQSCLKIK-YMFPKAHATAYILMALRIAWFKVYYPV 1274

Query: 786  EFLAASMTLEMD------------------------------------NVEKIKKFCQDA 809
             +  + +++  D                                     V +I   C + 
Sbjct: 1275 IYYTSYLSVRADLFDIVAMSHGKNTVKAAMKTIRDQGNNASTKDKTLLTVLEIANECLE- 1333

Query: 810  RQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
            R  NI ++     +  ++FK+ D + I      + G+G   A+ I+ A  ++PF S ED 
Sbjct: 1334 RGININMVDIE-KSDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDL 1392

Query: 869  CSRVDSKKLNRRVLESLVFAGALD 892
              R    K+++ ++E     G LD
Sbjct: 1393 SIR---GKVSQTIMEYFENNGVLD 1413


>gi|46907546|ref|YP_013935.1| DNA polymerase III PolC [Listeria monocytogenes str. 4b F2365]
 gi|47093944|ref|ZP_00231681.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
            monocytogenes str. 4b H7858]
 gi|254824621|ref|ZP_05229622.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|300765440|ref|ZP_07075422.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            monocytogenes FSL N1-017]
 gi|67460321|sp|Q720A2|DPO3_LISMF RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|46880814|gb|AAT04112.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
            monocytogenes serotype 4b str. F2365]
 gi|47017682|gb|EAL08478.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
            monocytogenes str. 4b H7858]
 gi|293593859|gb|EFG01620.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|300513877|gb|EFK40942.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            monocytogenes FSL N1-017]
 gi|328468603|gb|EGF39603.1| DNA polymerase III PolC [Listeria monocytogenes 1816]
          Length = 1444

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 189/912 (20%), Positives = 328/912 (35%), Gaps = 219/912 (24%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +   TA G + L +L++ M  ++   +  RI  S L+++  EGLI+ T  S G +  A 
Sbjct: 622  TIYAQTAVGLKNLFKLIT-MSNINYFYRVPRIPRSQLKKL-REGLIIGTACSQGELFEAM 679

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 Q AEK    +       K ++   +   L R           +V++      P+V
Sbjct: 680  MQKGMQAAEKVAEFYDFIEVQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVV 739

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE 272
            AT N  +    D     +L+   HS   +        PD + +   EM+  F+ L E   
Sbjct: 740  ATGNVHYKDPVDKIYRKILI---HSQGGANPLNRAELPDVHFRTTDEMLKEFAFLGE--- 793

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE--VRLAQGAIAK 330
                   +   I+  +A ++  ++E       K  ++EL    + G E  VR    A+A 
Sbjct: 794  ------EKAKEIVVTNANLVVDWMED-----LKPIKDELYTPKIDGAEDEVRNMSYAMAH 842

Query: 331  GYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
              + +   +    RL+ EL  I    F+  +LI    ++ +  +   VG  RGS   S  
Sbjct: 843  QLYGEKLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRGSVGSSFV 901

Query: 387  AYALTITDIDPLRFSLL-----------------------------------------FE 405
            A    IT+++PL    L                                         FE
Sbjct: 902  ATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPDKDCPHCGTPYQKEGQDIPFE 961

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA---LRDVG 462
             FL      +PD D++F  D +     Y +  +G + V +  T G++  K A   +R+  
Sbjct: 962  TFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFRAGTIGTVAEKTAFGYVRNYE 1021

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            R + M                                   +    +DRL+       G+ 
Sbjct: 1022 RDMNM----------------------------------TIRGAEIDRLV---AGCTGVK 1044

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLI 569
            R    H  GI++        +P Y DV    PV             T F+   I    ++
Sbjct: 1045 RTTGQHPGGIIV--------IPDYMDVYDFTPVQFPADATDSEWKTTHFDFHSIHD-NVL 1095

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTK 615
            K D LG    T ++   D        +D   IP DD +   L               +  
Sbjct: 1096 KLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPDVMKLFGSTESLGVKPADIDSKT 1150

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
            GTLGI +  +  +RQ LE  +P    +++ +  L       ++ + N  +  K K   + 
Sbjct: 1151 GTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG---TDVWLGNAEELIKNKTCEL- 1206

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            P +     +    +IYQ        L S  +    + +R+  GK + EEM++        
Sbjct: 1207 PDVIGCRDDIMVFLIYQ-------GLESSLAFKIMESVRK--GKGLTEEMEEAM------ 1251

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                 ++  + +   E   K   Y F K+HAAAY +++ + A+ K HYP+ F A   T+ 
Sbjct: 1252 -----MANKVPLWYIESCKKIK-YMFPKAHAAAYVLMAVRIAYFKVHYPLYFYATYFTVR 1305

Query: 796  MDNV---------EKIKKFCQD--------------------------ARQFNIQIMPPS 820
             D+          E +K   ++                          AR F+ Q +   
Sbjct: 1306 ADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQKV-DL 1364

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
              +   +F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    K+++ 
Sbjct: 1365 YKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---GKVSKT 1421

Query: 881  VLESLVFAGALD 892
            +++ +   G L+
Sbjct: 1422 IIQYMDDQGCLE 1433


>gi|300214373|gb|ADJ78789.1| DNA polymerase III polC-type (PolIII) [Lactobacillus salivarius CECT
            5713]
          Length = 1444

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 176/893 (19%), Positives = 331/893 (37%), Gaps = 217/893 (24%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++L  T EG + L +L S   ++    +  R+  S L++   EGLI+ +  + G +  A 
Sbjct: 619  IILAKTQEGLKNLFKLTSES-MVKYFYRVPRVPRSILEKY-REGLIVGSACADGEVFTAM 676

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
                  +A+++   +       K L+   L   L +    D   E  + +V+LA+  + P
Sbjct: 677  MQKGYTIAKQKAEFYDYLEVQPKPLYEPLLEQELVKDN--DNLEEIITNMVKLAHELDKP 734

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPE 269
            +VAT +  F+++ED     +L+   HS   +   +R +  PD + +   EM+  FS L E
Sbjct: 735  IVATGDVHFMNKEDAIYRKILI---HSQAGANPLNRLKKLPDVHFRTTDEMLEEFSFLGE 791

Query: 270  ALENTVEIARRCSFILQVH--APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
             +   + +      + ++    P+  +    + +  +++  +   N+A A     L +  
Sbjct: 792  DIAKEIVVTNPNKLVDEISEITPVKDKLYTPKMEGAEQDIHDLTMNRAHAWYGDTLPEIV 851

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                      ++RLD EL  +    FS  +LI    +  + K+   VG  RGS   S+ A
Sbjct: 852  ----------QKRLDKELKSVIGNGFSVIYLISQKLVYKSNKDGYLVG-SRGSVGSSLVA 900

Query: 388  YALTITDIDPL------------RF-----------------------------SLLFER 406
                IT+++PL             F                              + FE 
Sbjct: 901  TMTGITEVNPLPPHYRCPKCKWTHFYEKGEYGSGYDLPDKDCPNCGTELIKDGQDIPFET 960

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL      +PD D++F  D +     Y +  +G   V +  T G++  K A   V +A +
Sbjct: 961  FLGFKGNKVPDIDLNFSGDYQPIAHNYTKVLFGENNVYRAGTIGTVADKTAYGYV-KAYE 1019

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
                Q                          FR A      +DRL   ++   G+ R   
Sbjct: 1020 RDTEQ-------------------------NFRGAE-----IDRL---AKGATGVKRTTG 1046

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDF 573
             H AGI++        VP Y D+    P+             T F+   I    ++K D 
Sbjct: 1047 QHPAGILV--------VPDYMDIYDFTPIQYPADDLTAAWRTTHFDFHSIHD-NILKLDI 1097

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLG 619
            LG    T+++   D        +D   IP DD     L               ++ GTLG
Sbjct: 1098 LGHDDPTMIRMLQDLSG-----IDPKTIPTDDPGVMALFSGTDILGVTPEEIQSSTGTLG 1152

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSI 674
            + +  +  +R  LE   P    +++ +  L        G  + ++     KNG   +  +
Sbjct: 1153 VPEFGTRFVRGMLEETHPKTFAELLKISGLSHGTDVWLGNAEELI-----KNGTVTMPDV 1207

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
                D ++ +   + +  ++  +I + +               G+ I +E   Q +   +
Sbjct: 1208 IGCRDDIMMDLIHMGVESDKAFKIMEHVR-------------KGRGIPDEW--QADMRAA 1252

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               +  I   + +           Y F K+HAAAY +++ + A+ K +YP+ + AA  ++
Sbjct: 1253 DVPEWYIGACLKIK----------YMFPKAHAAAYVLMALRIAYFKVYYPLVYYAAYFSV 1302

Query: 795  EMDNVEKI-----KKFCQDARQF-------------NI--------QIMPPSVNTPCVDF 828
              D+ + +     K+  ++A +              N+        +++    +   VD 
Sbjct: 1303 RADDFDLVSMSRGKEAVKNAMELINSKGNEATTKEKNLLTVLEIANEMLERGFDFSMVDI 1362

Query: 829  KVGDNR----------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
               D +          +     AI G+G   A+ I+ A  ++ F S ED   R
Sbjct: 1363 NKSDAQNWTIQEDGRTLLAPFTAIPGLGLNVAKQIVAAREEQEFISKEDLSKR 1415


>gi|307692373|ref|ZP_07634610.1| DNA polymerase III PolC [Ruminococcaceae bacterium D16]
          Length = 1396

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 175/786 (22%), Positives = 289/786 (36%), Gaps = 189/786 (24%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +++L     G + L +L+S  +L +  K+   +  S + E   EGLI+ +   +G + +A
Sbjct: 564  LIVLAKNQTGLRNLYKLISLAHL-EHFKRYPIMPKSVINE-NREGLIIGSACEAGELFQA 621

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVN--LQRHRGYDRYRES------QVVQLAYTHELP 210
               +      KR+ ++      +   N      +G  R  E        VV+L      P
Sbjct: 622  VTADKDWEELKRIASWYDFLEIQPICNNMFMLRKGMVRSEEELRDFNRTVVRLGEELGKP 681

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
            + AT +  FL  ED     +L+A         +D     P  Y K   EM+  F+ L + 
Sbjct: 682  VCATGDVHFLDPEDEIYRHILLASK-----GFEDADEALP-IYFKTTDEMLQEFAYLGKE 735

Query: 270  -----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
                  ++NT  IA  C  I     P+       + +D     + EL+         RL 
Sbjct: 736  KAYEVVVKNTNLIADWCDPI----KPLPQGLFAPKLED----SDGELK---------RLV 778

Query: 325  QGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
             G   + Y     Q    R++ EL  I R K+   ++     +Q + ++   VG  RGS 
Sbjct: 779  WGKAHELYGDEPPQIVVDRINVELGDIIRCKYDVIYMSAQKLVQNSLEHGYLVG-SRGSV 837

Query: 382  AGSVTAYALTITDIDPL------------------------------------------- 398
              S+ A+   IT+++ L                                           
Sbjct: 838  GSSLVAFMSGITEVNSLPAHYRCPKCKHSDFDYAQDPAHPYGCGADMPDAVCPICGTPYM 897

Query: 399  --RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
               F++ FE FL      +PD D++F  + +    RY    +G   V +  T G++  K 
Sbjct: 898  KDGFNIPFETFLGFGGDKVPDIDLNFSGEYQSSAHRYTFELFGQTHVFRAGTIGTVAEKT 957

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A   V + L       D   K+                 S+  E RLA            
Sbjct: 958  AFGYVKKYL-------DERGKMA----------------SKAEENRLA-----------I 983

Query: 517  KLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKF 571
               G+ R    H  G+V+   D+ +    P+     D  SD+  T F    +E + L+K 
Sbjct: 984  GCTGVKRTTGQHPGGMVVIPQDKEIYDFCPVQHPADDPNSDIVTTHFEYHSME-SNLLKL 1042

Query: 572  DFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG------------ 619
            D LG    T++ + L+ L     + D   IP DD +T  +  +   LG            
Sbjct: 1043 DMLGHDDPTMI-RMLEDLTGVNARTD---IPLDDKDTMSIFQSSKALGYENDKILGPTGG 1098

Query: 620  --IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
              I +  +S +R  LE  QPD   DI+  +S +  G     V   N K+          L
Sbjct: 1099 TAIPEFGTSFVRGMLEDTQPDQF-DILVRLSGFSHG---TDVWLGNAKD----------L 1144

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLS-------GYSLSEADVLRRAMGKKIKEEMDKQ-- 728
            I     +    I  ++ +M    L+S        + + EA    R + +  ++EM +   
Sbjct: 1145 ITSGTAKVSEAIGCRDDIMLF--LISKGMDPKRSFKIMEAVRKGRGLPEGAEDEMREHGV 1202

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
             E +I      G  K IA            Y F K+HA AY +++++ AW K H P+ F 
Sbjct: 1203 PEWYI------GSCKKIA------------YLFPKAHAVAYVMMAFRIAWFKVHRPLAFY 1244

Query: 789  AASMTL 794
            AA  ++
Sbjct: 1245 AAYFSI 1250


>gi|301300283|ref|ZP_07206492.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            salivarius ACS-116-V-Col5a]
 gi|300852124|gb|EFK79799.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            salivarius ACS-116-V-Col5a]
          Length = 1444

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 158/786 (20%), Positives = 296/786 (37%), Gaps = 181/786 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++L  T EG + L +L S   ++    +  R+  S L++   EGLI+ +  + G +  A 
Sbjct: 619  IILAKTQEGLKNLFKLTSES-MVKYFYRVPRVPRSILEKY-REGLIVGSACADGEVFTAM 676

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
                  +A+++   +       K L+   L   L +    D   E  + +V+LA+  + P
Sbjct: 677  MQKGYTIAKQKAEFYDYLEVQPKPLYEPLLEQELVKDN--DNLEEIITNMVKLAHELDKP 734

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPE 269
            +VAT +  F+++ED     +L+   HS   +   +R +  PD + +   EM+  FS L E
Sbjct: 735  IVATGDVHFMNKEDAIYRKILI---HSQAGANPLNRLKKLPDAHFRTTDEMLEEFSFLGE 791

Query: 270  ALENTVEIARRCSFILQVH--APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
             +   + +      + ++    P+  +    + +  +++  +   N+A A     L +  
Sbjct: 792  DIAKEIVVTNPNKLVDEISEITPVKDKLYTPKMEGAEQDIHDLTMNRAHAWYGDTLPEIV 851

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                      ++RLD EL  +    FS  +LI    +  + K+   VG  RGS   S+ A
Sbjct: 852  ----------QKRLDKELKSVIGNGFSVIYLISQKLVYKSNKDGYLVG-SRGSVGSSLVA 900

Query: 388  YALTITDIDPL------------RF-----------------------------SLLFER 406
                IT+++PL             F                              + FE 
Sbjct: 901  TMTGITEVNPLPPHYRCPKCKWTHFYEKGEYGSGYDLPDKDCPNCGTELIKDGQDIPFET 960

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL      +PD D++F  D +     Y +  +G   V +  T G++  K A   V +A +
Sbjct: 961  FLGFKGNKVPDIDLNFSGDYQPIAHNYTKVLFGENNVYRAGTIGTVADKTAYGYV-KAYE 1019

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
                Q                          FR A      +DRL   ++   G+ R   
Sbjct: 1020 RDTEQ-------------------------NFRGAE-----IDRL---AKGATGVKRTTG 1046

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDF 573
             H AGI++        VP Y D+    P+             T F+   I    ++K D 
Sbjct: 1047 QHPAGILV--------VPDYMDIYDFTPIQYPADDLTAAWRTTHFDFHSIHD-NILKLDI 1097

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLG 619
            LG    T+++   D        +D   IP DD     L               ++ GTLG
Sbjct: 1098 LGHDDPTMIRMLQDLSG-----IDPKTIPTDDPGVMALFSGTDILGVTPEEIQSSTGTLG 1152

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRP-----GPIDNIVVYNNRKNGKEKIVSI 674
            + +  +  +R  LE   P    +++ +  L        G  + ++     KNG   +  +
Sbjct: 1153 VPEFGTRFVRGMLEETHPKTFAELLKISGLSHGTDVWLGNAEELI-----KNGTVTMPDV 1207

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
                D ++ +   + +  ++  +I + +               G+ I +E   Q +   +
Sbjct: 1208 IGCRDDIMMDLIHMGVESDKAFKIMEHVR-------------KGRGIPDEW--QADMRAA 1252

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               +  I   + +           Y F K+HAAAY +++ + A+ K +YP+ + AA  ++
Sbjct: 1253 DVPEWYIGACLKIK----------YMFPKAHAAAYVLMALRIAYFKVYYPLVYYAAYFSV 1302

Query: 795  EMDNVE 800
              D+ +
Sbjct: 1303 RADDFD 1308


>gi|289806004|ref|ZP_06536633.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 158

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 20  YSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDM 79
           YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+PI+G   ++  
Sbjct: 1   YSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV-- 58

Query: 80  QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI 139
             N  + ++       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+
Sbjct: 59  -HNELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL 110

Query: 140 GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 111 -KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 158


>gi|255030455|ref|ZP_05302406.1| hypothetical protein LmonL_17616 [Listeria monocytogenes LO28]
          Length = 193

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 108/210 (51%), Gaps = 18/210 (8%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +L    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PIIG  + + +Q 
Sbjct: 1   MLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPIIG--MTVTIQG 58

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            L   N  +        ++L+  +  GY +L+++ S +   ++G +   +  SWL+   +
Sbjct: 59  YLNPINSYE--------LILIAESTAGYHQLLKIASAIQTREEGPE---LPQSWLRAYSS 107

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYDRYRESQV 200
           + LI+++ G+ G I+R       + A +      ++FG + +Y++ Q+    +    +++
Sbjct: 108 D-LIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQKE---NPRLFAKI 163

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              +    +P+VAT N  +L  +D +A +V
Sbjct: 164 ETFSSEENVPVVATKNVQYLEPKDAQAKEV 193


>gi|226223921|ref|YP_002758028.1| DNA polymerase III (alpha subunit) [Listeria monocytogenes Clip81459]
 gi|225876383|emb|CAS05092.1| Putative DNA polymerase III (alpha subunit) [Listeria monocytogenes
            serotype 4b str. CLIP 80459]
          Length = 1444

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 189/912 (20%), Positives = 328/912 (35%), Gaps = 219/912 (24%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +   TA G + L +L++ M  ++   +  RI  S L+++  EGLI+ T  S G +  A 
Sbjct: 622  TIYAQTAVGLKNLFKLIT-MSNINYFYRVPRIPRSQLKKL-REGLIIGTACSQGELFEAM 679

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 Q AEK    +       K ++   +   L R           +V++      P+V
Sbjct: 680  MQKGMQAAEKVAEFYDFIEVQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVV 739

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE 272
            AT N  +    D     +L+   HS   +        PD + +   EM+  F+ L E   
Sbjct: 740  ATGNVHYKDPVDKIYRKILI---HSQGGANPLNRAELPDVHFRTTDEMLKEFAFLGE--- 793

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE--VRLAQGAIAK 330
                   +   I+  +A ++  ++E       K  ++EL    + G E  VR    A+A 
Sbjct: 794  ------EKAKEIVVTNANLVVDWMED-----LKPIKDELYTPKIDGAEDEVRNMSYAMAH 842

Query: 331  GYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
              + +   +    RL+ EL  I    F+  +LI    ++ +  +   VG  RGS   S  
Sbjct: 843  QLYGEKLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRGSVGSSFV 901

Query: 387  AYALTITDIDPLRFSLL-----------------------------------------FE 405
            A    IT+++PL    L                                         FE
Sbjct: 902  ATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPDKDCPHCGTSYQKEGQDIPFE 961

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA---LRDVG 462
             FL      +PD D++F  D +     Y +  +G + V +  T G++  K A   +R+  
Sbjct: 962  TFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFRAGTIGTVAEKTAFGYVRNYE 1021

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            R + M                                   +    +DRL+       G+ 
Sbjct: 1022 RDMNM----------------------------------TIRGAEIDRLV---AGCTGVK 1044

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLI 569
            R    H  GI++        +P Y DV    PV             T F+   I    ++
Sbjct: 1045 RTTGQHPGGIIV--------IPDYMDVYDFTPVQFPADATDSEWKTTHFDFHSIHD-NVL 1095

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTK 615
            K D LG    T ++   D        +D   IP DD +   L               +  
Sbjct: 1096 KLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPDVMKLFGSTESLGVKPADIDSKT 1150

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
            GTLGI +  +  +RQ LE  +P    +++ +  L       ++ + N  +  K K   + 
Sbjct: 1151 GTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG---TDVWLGNAEELIKNKTCEL- 1206

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            P +     +    +IYQ        L S  +    + +R+  GK + EEM++        
Sbjct: 1207 PDVIGCRDDIMVFLIYQ-------GLESSLAFKIMESVRK--GKGLTEEMEEAM------ 1251

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                 ++  + +   E   K   Y F K+HAAAY +++ + A+ K HYP+ F A   T+ 
Sbjct: 1252 -----MANKVPLWYIESCKKIK-YMFPKAHAAAYVLMAVRIAYFKVHYPLYFYATYFTVR 1305

Query: 796  MDNV---------EKIKKFCQD--------------------------ARQFNIQIMPPS 820
             D+          E +K   ++                          AR F+ Q +   
Sbjct: 1306 ADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQKV-DL 1364

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
              +   +F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    K+++ 
Sbjct: 1365 YKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---GKVSKT 1421

Query: 881  VLESLVFAGALD 892
            +++ +   G L+
Sbjct: 1422 IIQYMDDQGCLE 1433


>gi|254932365|ref|ZP_05265724.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|293583921|gb|EFF95953.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|328475042|gb|EGF45830.1| DNA polymerase III PolC [Listeria monocytogenes 220]
          Length = 1444

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 189/912 (20%), Positives = 328/912 (35%), Gaps = 219/912 (24%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +   TA G + L +L++ M  ++   +  RI  S L+++  EGLI+ T  S G +  A 
Sbjct: 622  TIYAQTAVGLKNLFKLIT-MSNINYFYRVPRIPRSQLKKL-REGLIIGTACSQGELFEAM 679

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 Q AEK    +       K ++   +   L R           +V++      P+V
Sbjct: 680  MQKGMQAAEKVAEFYDFIEVQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVV 739

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE 272
            AT N  +    D     +L+   HS   +        PD + +   EM+  F+ L E   
Sbjct: 740  ATGNVHYKDPVDKIYRKILI---HSQGGANPLNRAELPDVHFRTTDEMLKEFAFLGE--- 793

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE--VRLAQGAIAK 330
                   +   I+  +A ++  ++E       K  ++EL    + G E  VR    A+A 
Sbjct: 794  ------EKAKEIVVTNANLVVDWMED-----LKPIKDELYTPKIDGAEDEVRNMSYAMAH 842

Query: 331  GYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
              + +   +    RL+ EL  I    F+  +LI    ++ +  +   VG  RGS   S  
Sbjct: 843  QLYGEKLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRGSVGSSFV 901

Query: 387  AYALTITDIDPLRFSLL-----------------------------------------FE 405
            A    IT+++PL    L                                         FE
Sbjct: 902  ATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPDKDCPHCGTPYQKEGQDIPFE 961

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA---LRDVG 462
             FL      +PD D++F  D +     Y +  +G + V +  T G++  K A   +R+  
Sbjct: 962  TFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFRAGTIGTVAEKTAFGYVRNYE 1021

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            R + M                                   +    +DRL+       G+ 
Sbjct: 1022 RDMNM----------------------------------TIRGAEIDRLV---AGCTGVK 1044

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLI 569
            R    H  GI++        +P Y DV    PV             T F+   I    ++
Sbjct: 1045 RTTGQHPGGIIV--------IPDYMDVYDFTPVQFPADATDSEWKTTHFDFHSIHD-NVL 1095

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTK 615
            K D LG    T ++   D        +D   IP DD +   L               +  
Sbjct: 1096 KLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPDVMKLFGSTESLGVKSADIDSKT 1150

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
            GTLGI +  +  +RQ LE  +P    +++ +  L       ++ + N  +  K K   + 
Sbjct: 1151 GTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG---TDVWLGNAEELIKNKTCEL- 1206

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            P +     +    +IYQ        L S  +    + +R+  GK + EEM++        
Sbjct: 1207 PDVIGCRDDIMVFLIYQ-------GLESSLAFKIMESVRK--GKGLTEEMEEAM------ 1251

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                 ++  + +   E   K   Y F K+HAAAY +++ + A+ K HYP+ F A   T+ 
Sbjct: 1252 -----MANKVPLWYIESCKKIK-YMFPKAHAAAYVLMAVRIAYFKVHYPLYFYATYFTVR 1305

Query: 796  MDNV---------EKIKKFCQD--------------------------ARQFNIQIMPPS 820
             D+          E +K   ++                          AR F+ Q +   
Sbjct: 1306 ADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQKV-DL 1364

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
              +   +F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    K+++ 
Sbjct: 1365 YKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---GKVSKT 1421

Query: 881  VLESLVFAGALD 892
            +++ +   G L+
Sbjct: 1422 IIQYMDDQGCLE 1433


>gi|13507773|ref|NP_109722.1| DNA polymerase III PolC [Mycoplasma pneumoniae M129]
 gi|2494192|sp|P75080|DPO3_MYCPN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|1673778|gb|AAB95768.1| DNA polymerase III (dnaE) alpha chain [Mycoplasma pneumoniae M129]
          Length = 1443

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 150/757 (19%), Positives = 289/757 (38%), Gaps = 187/757 (24%)

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEAL------ENTVEIARRCSF--ILQVHAPILPR 294
            K+R +  P+ +++   EM++  S L E L      ENT ++A++ +   ++ V   + P 
Sbjct: 759  KEREQRVPNVFVRTTGEMLNEMSFLGEQLAYELVVENTNKLAKQLTADDLVPVQTKLQPP 818

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
             IE   +++  +  ++   KA+ G  +             +   QR+  EL  I    F 
Sbjct: 819  VIEGSNENLAAKTWSQA--KAIYGDPL------------PKLIEQRIQEELKAIIDNGFG 864

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------- 398
              + I    ++ + ++   VGP RGS   S+ A  + I++I+PL                
Sbjct: 865  IIYWISHLLVKQSVQDGYFVGP-RGSIGSSLVANLIGISEINPLVPHYLCESCQYFEVNE 923

Query: 399  ----RFSLL---------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
                 + L+                     F  F+      +PD D++F  + + +   Y
Sbjct: 924  EVDDGYDLMVRDCPKCGAKAAFKGDGHNIPFATFMGFAGDKIPDIDLNFSSEYQAKAHAY 983

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            V+  +G +   +  T  ++  K A           Y       ++I              
Sbjct: 984  VRELFGEQYTFRAGTIATVAEKTA-----------YGYARNYFEII-------------- 1018

Query: 494  DDSRFREARLAD-PSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPM---YR 547
                 ++  LA  P ++R     QKL G+ R    H  GI+I    + + +  P      
Sbjct: 1019 -----KQTELATAPEIERF---KQKLVGIKRTTGQHPGGIMIFPNHKSVYEFTPCGYPAD 1070

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP-FDDH 606
            D  SD   T F    +    ++K D LG    T+L+   D        V+   IP FD  
Sbjct: 1071 DTSSDWKTTHFEYDALGNT-ILKLDILGQDDPTMLKHLGDL-----THVNPQNIPRFDKK 1124

Query: 607  ET-------------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             T             ++L    G +GI +  +  +R+ LE  +P    D+I +  L    
Sbjct: 1125 LTEMFWSVNPLKLKPHYLDEPTGAIGIPEFGTKFVRKILEQTKPKGFGDLIRVSGLSHG- 1183

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               N+   N +K  K++ +S+  +I         +++Y   + +  Q    + + E   +
Sbjct: 1184 --KNVWADNAQKILKDQNLSLKDVIAC----RDDIMLYL--IHKGMQAKDAFEIMEK--V 1233

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+ +    KE    Q     +G  ++ I+  + ++          Y F K+HAAAY +++
Sbjct: 1234 RKGIALNAKEVQLMQS----NGVEQHWINSCLKIS----------YLFPKAHAAAYVLMA 1279

Query: 774  YQTAWMKTHYPVEFLAASMTL----------------------EMDNVEKIKKF------ 805
            ++ AW K ++P+ + A  ++                       E++ + +IK+       
Sbjct: 1280 WRIAWFKLYHPLSYYACLLSFKLKEHDVSGFKSGVSFVKQKLEELNTLYRIKRIKPKEAE 1339

Query: 806  CQDARQFNIQIMPPSV--------NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
               + +  +++M   +        ++    F   +  +      I G+G   A  I+EA 
Sbjct: 1340 LLTSYEVYLEMMARGIKLEQISLTHSHATRFVEHNGMLIAPFITIPGMGEAVANSIIEAR 1399

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             +KPF SL+DF  R    K+ ++ +E+      LD F
Sbjct: 1400 NEKPFSSLDDFKKRT---KITKKHIEAFTQMQLLDEF 1433


>gi|313885310|ref|ZP_07819061.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus
            coleocola ACS-139-V-Col8]
 gi|312619416|gb|EFR30854.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus
            coleocola ACS-139-V-Col8]
          Length = 1435

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 158/800 (19%), Positives = 291/800 (36%), Gaps = 221/800 (27%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT N  +L E+D     +   V   ++   + R  V P  + +   EM+  F+ L E
Sbjct: 729  PVVATGNVHYLDEKD----AIYREVVQRSLKINQSRDLVLPQVHFRTTDEMLDEFAFLGE 784

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--KEEENELRNKAVAGLEVRLAQGA 327
             +   V +    +                  D I+  K  ++EL    + G E  + Q  
Sbjct: 785  EIAYEVVVTNSQAI----------------ADSIETIKVVKDELYAPRIEGAEDEITQLT 828

Query: 328  IAKGY--HAQDY----RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
              + +  + QD      +R++ ELN I    F+  +LI    +  + ++   VG  RGS 
Sbjct: 829  YQRAHELYGQDLPEIVEKRIEKELNSIINNGFAIMYLIAQKLVHKSNQDGYLVG-SRGSV 887

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S+ A    IT+++PL                                           
Sbjct: 888  GSSLVATFTGITEVNPLAPHYHCPNCQYSEFYTQGEYGSGFDLPNKACPKCGAQLAKDGH 947

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL-- 458
             + FE FL  +   +PD D++F  D + +   Y +  +G + V +  T G++ AK AL  
Sbjct: 948  DIPFETFLGFNGDKVPDIDLNFSGDYQAQAHAYTKVLFGEDYVYKAGTIGTVAAKTALGY 1007

Query: 459  -----RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
                   VG   Q+P ++ +RL                                      
Sbjct: 1008 VRGYIESVGH--QLPQAEKERL-------------------------------------- 1027

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNM 560
             +  +EG+ R    H  GI++        +P Y DV    P+             T F+ 
Sbjct: 1028 -AYGIEGVRRTTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDSSADWRTTHFDF 1078

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-------- 612
              I+ A ++K D LG    T+++   D        +D + IP DD +   L         
Sbjct: 1079 HSID-ANVLKLDILGHDDPTVIRMLQDLSG-----IDPTTIPTDDADVMKLFSGTEILGV 1132

Query: 613  ------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
                  +  GTLGI +  ++ +R  +   +P    +++ +  L       ++ + N ++ 
Sbjct: 1133 TPEQIYSDTGTLGIPEFGTNFVRGMVSETKPKTFAELLQISGLSHG---TDVWLGNAQEL 1189

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             K  +V       P+ K    VI  ++ +M +  +  G        +  A+  KI E + 
Sbjct: 1190 IKNNVV-------PLAK----VIGCRDDIM-VTLIQWG--------MEEALAFKIMEHVR 1229

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K K        K   +K     I   L     Y F K+HAAAY +++ + A+ K H+P+ 
Sbjct: 1230 KGKGIPDDWQDKMREAKVPEWYIDSCLK--IKYMFPKAHAAAYVLMALRVAYFKVHHPLY 1287

Query: 787  FLAASMTLEMDNV---------EKIKKFCQDARQ-----------------FNIQIMPPS 820
            +  A  ++   +V         E +K+  ++  +                    +++   
Sbjct: 1288 YYCAYFSVRAKDVDIVAMYQGKEMVKRRIKEINEKGNDASNKEKELIVELYIANEMLERG 1347

Query: 821  VNTPCVDFKVGDNRIYY--------SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             +   VD +    R Y             I G+G + A  I++A ++  F S ED   R 
Sbjct: 1348 YHFKMVDLEKSQARNYVIESDSLIPPFKTIPGLGASVADQIVQARSEASFLSKEDLSKR- 1406

Query: 873  DSKKLNRRVLESLVFAGALD 892
               K+++ +++ +   G ++
Sbjct: 1407 --GKVSKSLIDYMTEQGIIN 1424


>gi|170754900|ref|YP_001781966.1| DNA polymerase III PolC [Clostridium botulinum B1 str. Okra]
 gi|169120112|gb|ACA43948.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum B1 str. Okra]
          Length = 1432

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 187/902 (20%), Positives = 325/902 (36%), Gaps = 201/902 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +++L   A G + L +LVS+  L    K+  R+  S + E   EGLI+ +   +G I + 
Sbjct: 609  LIILAKNAVGLKNLYKLVSKSNLEYFFKRP-RMAKSLINEY-KEGLIIGSACEAGQIYKE 666

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
                 ++   K ++ F      + L  +   V     +     +E   ++ +L   +  P
Sbjct: 667  ILKGKTKEELKNMINFYDYLEIQPLGNNEFLVKNGSVKDEKELQEINKKICELGEFYNKP 726

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
            +VAT +  FL EE      +LM+       S  D     P  Y +   EM+  F  L E 
Sbjct: 727  VVATCDVHFLDEEHEVFRRILMS---GQGFSDADN---QPPLYFRTTEEMLKEFEYLGEE 780

Query: 270  -----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
                  + NT +IA     I  +     P  IE   +DI++             + +  A
Sbjct: 781  KAKEVVIHNTNKIADMIDEIKPIPEETFPPKIEGAEEDIRR-------------MTIEKA 827

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              AI      +   +RL  ELN I    ++  +LI    +  + ++   VG  RGS   S
Sbjct: 828  H-AIYGDPLPEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SRGSVGSS 885

Query: 385  VTAYALTITDIDPL---------RFS--------------------------------LL 403
              A    IT+++ L         ++S                                + 
Sbjct: 886  FAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIKDGHDIP 945

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A   V +
Sbjct: 946  FETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTAYGFVKK 1005

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             L                                 +  +  +  ++RL   S+   G+ R
Sbjct: 1006 YLDE-------------------------------KNIKANNAEIERL---SKGCTGVKR 1031

Query: 524  HASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
             +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D LG   
Sbjct: 1032 TSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSIS-GRLLKLDILGHDD 1090

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLE 624
             T+L+     + Q   +VD   +P  D +   L T+               GT G+ +  
Sbjct: 1091 PTVLR-----MLQDLTQVDPKSVPLGDPKVISLFTSPKALGVTEEDIDCPVGTYGLPEFG 1145

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +  +RQ L   +P    +++ +  L       ++ + N +   KE   +I   I      
Sbjct: 1146 TKFVRQMLLDTKPKSFAELVRISGLSHGT---DVWLNNAQYFIKEGYTTIKDCIST---- 1198

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK-QKERFISGASKNGISK 743
               +++Y  Q     +L    + +  + +R+  GK + EE +   KE  +         K
Sbjct: 1199 RDDIMVYLLQ----KELPPKSAFTIMEKVRK--GKGLTEEQEALMKEHDVPDWYIESCKK 1252

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---- 799
                           Y F K HA AY +++ + A+ K +YP  + A   ++  D+     
Sbjct: 1253 I-------------KYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADL 1299

Query: 800  -----EKIKKFCQDARQFNIQIMPPS-------------------------VNTPCVDFK 829
                 EKIK+   +       I                               +    F 
Sbjct: 1300 IVKGEEKIKEKMNELYAMGNNITQKDKGLLTILEISYEMYKREIKFLKVDLYKSNATKFL 1359

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +  + I   L+A++GVG   A+ I EA  +  F S ED   R    K+ + V+E+L   G
Sbjct: 1360 IEGDSIRPPLSALQGVGKNAAKSIEEARLEGEFISKEDLRLRT---KVTKTVIETLENHG 1416

Query: 890  AL 891
             L
Sbjct: 1417 CL 1418


>gi|291519550|emb|CBK74771.1| DNA polymerase III catalytic subunit, PolC type [Butyrivibrio
            fibrisolvens 16/4]
          Length = 1480

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 162/800 (20%), Positives = 291/800 (36%), Gaps = 192/800 (24%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++V L      P+VAT +  FL  +D     ++MA        Q+         YL +  
Sbjct: 751  KIVALGEEFNKPVVATCDVHFLDPQDEIYRRIIMANKGFDDADQQ------APLYLHSTD 804

Query: 259  EMVSIFSDLPEA------LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            EM+  FS L  A      +ENT  IA  C +I  V     P  IE   +D+++    E R
Sbjct: 805  EMLEEFSYLGLAKAHEVVIENTNMIADMCEYIHPVRPDKCPPVIEHSEEDLRR--ICETR 862

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
               V G ++     A            RL+ ELN I    +S  ++I    +  + ++  
Sbjct: 863  AHEVYGPDLPEIVSA------------RLERELNSIIGNGYSVMYIIAQKLVWKSNEDGY 910

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPL---------------------------------- 398
             VG  RGS   S  A    IT+++PL                                  
Sbjct: 911  LVG-SRGSVGSSFAATMAGITEVNPLPPHYRCPNCFYVDFDGPEVQEIVNQGLSGVDMPD 969

Query: 399  -------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                          F + FE FL       PD D++F  + + +  +Y +  +G  +  +
Sbjct: 970  KICPKCGKPLAKDGFDIPFETFLGFKGDKEPDIDLNFSNEYQSKAHKYTEVIFGEGQTFK 1029

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T  +L  K A   VG  L+  Y + D                         R+ R  +
Sbjct: 1030 AGTVSTLADKNA---VGYVLKY-YEKRD------------------------IRKRRAEN 1061

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVR--SDLPVTQFNMK 561
                    I++ +EG+      H  G+V+      +    P+       +D+  T F+  
Sbjct: 1062 E------RIAKGVEGVKSTTGQHPGGVVVLPNGEDIYSFTPVQHPANKDTDIVTTHFDYH 1115

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------- 612
             I+ A L+K D LG    T++++  D        ++ + IP DD +   L          
Sbjct: 1116 KID-ANLLKLDILGHLDPTMIKRLEDLTG-----INATEIPLDDKDVMSLFQSTKALGIT 1169

Query: 613  ------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
                  T  GTLGI +  +    Q L   +P    D++ +  L     +          N
Sbjct: 1170 PDDIMGTPLGTLGIPEFGTDFAMQMLVEAKPQYFTDLVRIAGLAHGTDV-------WLGN 1222

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-EEM 725
             ++ I+S    I   +     +++Y    +    L    S +  + +R+ +  K K +E 
Sbjct: 1223 AQDLILSGTATITEAICTRDDIMVY----LIHKGLDPAESFTIMERVRKGVVAKGKCDEW 1278

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
               K+       ++G+      +  ++      Y F K+HAAAY +++++ A+ K +YP+
Sbjct: 1279 PTYKQHM----QEHGVPDWYIGSCEKI-----KYMFPKAHAAAYVMMAWRVAYCKINYPL 1329

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQI--MPPSVNTPCVD---------------- 827
             + AA  ++     +  +K CQ   +   +I  +    +    D                
Sbjct: 1330 AYYAAFFSIRAGGFD-YEKCCQGKARCEQEIKNLKAQSDLSATDKDVLIALRLVQEMYAR 1388

Query: 828  ----------------FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                            FK+ DN+I     ++ G+G   A  +  A++   F SL+D   R
Sbjct: 1389 GFDFLPMDLYQSDSRYFKIVDNKILPPFNSLPGMGDKAAEQLQIAASQGKFLSLDDIKDR 1448

Query: 872  VDSKKLNRRVLESLVFAGAL 891
                K+++ +++ +V  G +
Sbjct: 1449 ---GKVSQTIIDKMVELGVI 1465


>gi|300813717|ref|ZP_07094037.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus
            sp. oral taxon 836 str. F0141]
 gi|300512174|gb|EFK39354.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus
            sp. oral taxon 836 str. F0141]
          Length = 1415

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 184/886 (20%), Positives = 333/886 (37%), Gaps = 204/886 (23%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            S+ +L    EG + L +LVS  ++ +   +  ++  S + +   +GL++ +G  SG I  
Sbjct: 590  SLSILTKNEEGLKNLYKLVSDSHM-NYFNRVAKVPRSLINKY-RKGLLIGSGDESGEIFN 647

Query: 158  AFFFNSSQVAEKRLLTFKKLFG----DRLYVNLQRHRGYDRYRES------QVVQLAYTH 207
            AFF N      +++ +F         D    +L R++     RE       ++ ++    
Sbjct: 648  AFFRNLEIDEVEKIASFYDYLEIQPIDNFIPSLLRNK---LTREDIIEINKKICKVGENL 704

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSD 266
             +P++AT+N  +L E+D    D++  +  +  V   D   ++    Y K+   M+  FS 
Sbjct: 705  GIPVIATSNCFYLDEKD----DLVRRIILNGKVGVPDYNAKIKQKLYFKSTDLMLEEFSY 760

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
            L    +  +E+    +             I    D+++   + +     + G E  L   
Sbjct: 761  L--GADKAMEVVVTNT-----------NLINDSIDNVKPIPDGKYP-PVIEGSEETLKNI 806

Query: 327  AIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
               K +        Q    RL  EL+ I    ++  ++I    ++ +  +   VG  RGS
Sbjct: 807  TYKKAHEIYGDPLPQIVEARLKKELDSIISNGYAVLYIIAQKLVKKSNDDGYLVG-SRGS 865

Query: 381  GAGSVTAYALTITDIDPL---------RFS------------------------------ 401
               S  A+   IT+++PL         ++S                              
Sbjct: 866  VGSSFAAHMADITEVNPLPAHYICPQCKYSEFMEDPTIGSGVDLADKNCPKCGHKLNKNG 925

Query: 402  --LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL       PD D++F  + +    +Y +  +G   V +  T G +  K A  
Sbjct: 926  HNIPFEVFLGFYGDKEPDIDLNFAGEYQPNAHKYTEELFGKGYVFRAGTIGKVAYKTAYG 985

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V +  +                                 +  ++   VDRL   + +  
Sbjct: 986  YVKKFFE--------------------------------NQEDISQTEVDRL---TIEAT 1010

Query: 520  GLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R +  H  G++I    + +    P+     D  S +  T F+  +I    ++K D L
Sbjct: 1011 GVKRTSGQHPGGVMICPKSKDIFDFTPIQYPADDKSSGVITTHFDYNFIH-GKILKLDIL 1069

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            G    T+++   DF+      +D S IP DD         K TL +F   SSG +  L+ 
Sbjct: 1070 GHDGPTIIKMLEDFIG-----IDTSKIPLDD---------KDTLSLF---SSGEKLNLDK 1112

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
               D     + +   +  G +  +++    KN  E +V I  L       + G  ++   
Sbjct: 1113 NIFDVSTGTLGIPE-FGTGFVRQMLIDTKPKNFAE-LVRISGL-------SHGTDVW--- 1160

Query: 695  VMQIAQLLSG--YSLSEADVLRR-------AMGKKIKEEMDK-QKERFISGASKNGISKT 744
            +   A L+S    SLSE    R        A G + K   D  +K R   G +   I   
Sbjct: 1161 LGNAADLVSSGQASLSEVICTREDIMLYLIAAGAENKMAFDTMEKVRKGKGLTDEQIK-- 1218

Query: 745  IAVNIFELLAKFAD------YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
              +N  +L   + D      Y F K+HA AY ++S++ A+ K +YP+ F A   T+++ +
Sbjct: 1219 -IMNNLKLPPWYIDSCLKIKYMFPKAHAVAYVMLSFRIAYCKLNYPLAFYATYFTIKLSD 1277

Query: 799  V---------EKIK-----------------------KFCQDARQFNIQIMPPSV-NTPC 825
                      E IK                       +   +     ++ +P  +  +  
Sbjct: 1278 FVGEVIINGPEAIKAQIDFINNKETPSSKEQTQMPIYEVALEMYSRGLEFLPVDIYKSKA 1337

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
             +F + D +I   L A+ GVG   A++I+EA  D  F S ED   R
Sbjct: 1338 QEFTIEDKKIRMPLRALTGVGEQAAKNIIEARNDGQFLSKEDLLKR 1383


>gi|284048706|ref|YP_003399045.1| DNA polymerase III, alpha subunit [Acidaminococcus fermentans DSM
            20731]
 gi|283952927|gb|ADB47730.1| DNA polymerase III, alpha subunit [Acidaminococcus fermentans DSM
            20731]
          Length = 1191

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 208/987 (21%), Positives = 358/987 (36%), Gaps = 200/987 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  H+  S ++G   +  ++D        A+A+TD + +  A  F+    A  +    
Sbjct: 277  VELHCHTKMSKMDGLTPIKELVDTAVRWGHKALALTD-HGVVQAFPFAYDE-AKDLAKKN 334

Query: 72   GCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            G +L +   ++  L  + + K  +     I+LL    EG + L  LVS  +L   G +  
Sbjct: 335  GWELKLIYGVEGYLCHSREDKKNY----HIILLAKNVEGLRNLYRLVSLSHLQYFGGKPK 390

Query: 130  RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            R  ++  L +   +GLI+ +  ++G + RA          K + ++     D L +    
Sbjct: 391  RPRMTKGLLDQYRDGLIIGSACAAGEVYRAILAGLPDEEVKEIASYY----DYLEIQPTG 446

Query: 189  HRGY----DRYRESQVVQ---------LAYTHELP--LVATNNSLFLSEEDYEAHDVLMA 233
            +  Y     R+ +   V+         LA   EL    VAT +  FL+ ED  A  +L A
Sbjct: 447  NNNYLIRDPRFPDIHSVEDLQAINKKILALGDELGKLTVATCDVHFLNPEDALARKILQA 506

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPIL 292
                    Q       P  YL+   EM+  FS L + A E  VE A + S  ++   P+ 
Sbjct: 507  GMGYPDEEQ-------PPLYLRTTEEMLEEFSYLGDRAYEVVVENANKISDQVEHFKPVP 559

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELN 346
             R              ++L +  + G + ++   + A+ +        +    RL  EL+
Sbjct: 560  DR--------------DQLYSPTIPGAKEKVESLSYARAHEWYGPKLPKIVEDRLKQELS 605

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL-------- 398
             I    FS  + I    ++ +  +   VG  RGS   S  A  L IT+++PL        
Sbjct: 606  SIIGNGFSVLYYIAHLLVKKSNDDGYMVG-SRGSVGSSFVATMLNITEVNPLVPHYRCPH 664

Query: 399  ---------------------------------RFSLLFERFLNPDRMSMPDFDIDFCQD 425
                                               ++ F  FL      +PD D++F  +
Sbjct: 665  CYHTEFFTDGSVGSGFDLPEKDCPECGTPMIRDGHNIPFAVFLGFHGDKVPDIDLNFSGE 724

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +    +Y +  +G + V +  T G+++ K A           Y  +             
Sbjct: 725  YQPRAHKYTEELFGRDNVFRAGTLGTIKDKTA-----------YGYI------------- 760

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLE-ISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                       ++ E R  +P     +E +  KL G+ R    H  GIV+  R L     
Sbjct: 761  ----------KKYYETR-GEPKRTAFIEGLIPKLAGVKRTTGQHPGGIVVIPRDLDVHYI 809

Query: 545  MYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
                  +D P      T ++   I++  ++K D LG    T+++     L +   +    
Sbjct: 810  TPVSYPADDPSCGTITTHYDFHSIDER-IVKLDILGHDDPTVIKMLDRMLGEDYCRN--- 865

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII-ALVSLYRPGPIDNI 658
             IP  D +T  L  +  +LG+   E  G   A  G+ P+C    +  ++S  +P    ++
Sbjct: 866  -IPIGDPDTMELFLSTKSLGVTP-EQIGTDVATYGV-PECGTRFVRQMISDVKPKNFSDL 922

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVI---IYQEQVMQIAQLLSGYSLSEADVLRR 715
            +  +   +G           D  L   Q +I      E  +     +  + +++      
Sbjct: 923  LRISGYSHG----------TDVWLNNAQDLIRSGTPTEDTISTRDDIMNWLINKGMEPSM 972

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            A G        K  ++           K    + +        Y F K+HA AY + +Y+
Sbjct: 973  AFGIMEWSRKGKAHKKGFEPDQLEAFEKAHIPDFYIKACTTLQYLFPKAHAVAYVLSAYR 1032

Query: 776  TAWMKTHYPVEFLAA---------SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP-- 824
             A+ K H+P EF AA           TL    ++ +K+F Q+    N Q    SVN    
Sbjct: 1033 IAYCKVHHPKEFYAAYFTVRAPHFDYTLVHKGLDYMKRFIQNV---NAQGTKASVNDKDT 1089

Query: 825  ------CVD--------------------FKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                  CV+                    F V +  +   L AI G+G   A  I+EA  
Sbjct: 1090 ATYMELCVEMLERGFVFDEVDLYKSDAHKFLVTEKGLLPPLGAIGGIGGVAAEGIVEARK 1149

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESL 885
              PF S ED  +R      N  +L+ L
Sbjct: 1150 KGPFISQEDLRNRAKISTSNVEILDEL 1176


>gi|314927243|gb|EFS91074.1| hypothetical protein HMPREF9607_02750 [Propionibacterium acnes
           HL044PA1]
 gi|314970781|gb|EFT14879.1| hypothetical protein HMPREF9622_02070 [Propionibacterium acnes
           HL037PA3]
          Length = 262

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 110/241 (45%), Gaps = 14/241 (5%)

Query: 59  SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
           ++ A   GI  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2   AEAAEVCGIPTIIGSELSIGIPEP-----QNGVADPVGSHLLVLANGPEGYRRLTEALTD 56

Query: 119 MYLLDQGKQSVRI-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            YL + G +   +  L  L E+      +LTG   G + +       Q AE  L     L
Sbjct: 57  AYLAEGGHKGHPVHNLDHLAEVADGHWTVLTGCRKGAVRQGLAKGMPQ-AEAELRRLVDL 115

Query: 178 FG-DRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           FG   + V L  HR     R++ V+ +LA  H +  VAT  + +   E +E    L AV 
Sbjct: 116 FGIGNVLVELTDHRAPTDSRDNDVLAELASRHSVSTVATTAAHYAGAEQFELSCALSAVR 175

Query: 236 HSTVVSQKD---RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
               + + D    P   P   L++ +EM  +FS   +A++NTV +A + +F LQ   P L
Sbjct: 176 ARRSLDEMDGWLPP--GPVARLRSGAEMADLFSRHRDAVDNTVAVAEKTAFHLQSVRPRL 233

Query: 293 P 293
           P
Sbjct: 234 P 234


>gi|104161981|emb|CAJ75690.1| DNA polymerase III, alpha subunit [uncultured Thermotogales
            bacterium]
          Length = 1428

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 157/742 (21%), Positives = 270/742 (36%), Gaps = 165/742 (22%)

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF---------KKLFGD 180
            RI  S L ++  EGL++ +   SG + +A+   +S    + +  F           +   
Sbjct: 638  RIPKSLLADM-REGLLIGSACVSGELSKAYIGGASTDELEEIAKFYDYIEVMPLDNIDTS 696

Query: 181  RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                N+ R      YRE    ++     +P+V T +  FL+  D    D+  A  ++   
Sbjct: 697  EGETNMSRETLAKMYRE--FYKVGKRLNIPVVMTGDVHFLNPHD----DIFRAAINAA-- 748

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPE--------ALENTVEIARRCSFILQVHAPIL 292
               D  +  P  YL    EM+   S++ E         ++N+  IA     +  V   + 
Sbjct: 749  QDYDNFQNQPSLYLHTTEEMLDKASEIFEDEIIVREVVIDNSRYIASLIEEVTPVEGKLH 808

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P  IE          + E+R  A+   E      ++      +   +RL+ EL  I    
Sbjct: 809  PPVIEGA--------DEEVRKMAIENAE------SLYGSPLPEIVERRLNRELEAIIGHG 854

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------- 399
            ++  +LI    ++ + ++   VG  RGS   S+ A  + IT+++PL              
Sbjct: 855  YAVLYLIAQKMVKKSNEDGYVVG-SRGSVGSSLVANVIGITEVNPLHPHYLCPECGKSIF 913

Query: 400  ---------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                                        S+ FE FL  +   +PD D++F  + ++    
Sbjct: 914  PETDLECGYDLPDMNCPICGKKMSKNGQSIPFETFLGFEGDKVPDIDLNFSGEYQERAHS 973

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            +++  +G + V +  T  +L  + A   V RA    YS+                     
Sbjct: 974  FIEELFGRDHVFRAGTISTLAERTAFGFV-RA----YSE--------------------- 1007

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR--- 547
                  R  R A+        I++ + G+ R    H  G++I   D  +    P+     
Sbjct: 1008 ---KSGRNLRRAEQE-----RIARGIVGVRRTTGQHPGGLMIVPKDMDVHSFTPVQHPAN 1059

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D +     T F  + I    L+K D LG    T ++   D        VD   IP DD E
Sbjct: 1060 DTKGSTLTTHFAYEVIHD-DLVKIDALGHDDPTFIKMLKDITG-----VDPEKIPMDDPE 1113

Query: 608  T-------------YHLLTTK-GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            T             YH L T  GTLGI +  ++ +R  L   +P    +++ +  L    
Sbjct: 1114 TLSIFSSLKSLGVKYHELGTDMGTLGIPEFGTTFVRSMLSDTRPSTFGELVRISGLSH-- 1171

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                 V  NN K+          +I         VI  ++ +M     L    +   D  
Sbjct: 1172 --GTDVWLNNAKD----------IITSRQASLSNVIACRDDIMN---YLIARGMEPKDAF 1216

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
                  KI E++ K K   +S   +  +    A   F    K   Y F ++HAAAY  + 
Sbjct: 1217 ------KIMEKVRKGKG--LSEEDEREVRSCGAPEWFVNSCKKIKYLFPRAHAAAYVSMG 1268

Query: 774  YQTAWMKTHYPVEFLAASMTLE 795
            Y+ A+ K HYP+ F +   +++
Sbjct: 1269 YRVAYFKVHYPLAFYSTYFSIK 1290


>gi|258645985|ref|ZP_05733454.1| DNA polymerase III, alpha subunit [Dialister invisus DSM 15470]
 gi|260403356|gb|EEW96903.1| DNA polymerase III, alpha subunit [Dialister invisus DSM 15470]
          Length = 1227

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 204/1015 (20%), Positives = 371/1015 (36%), Gaps = 232/1015 (22%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  SL +G +    I+   A  + PA+AITD   + +  +    A   G + I 
Sbjct: 296  VELHLHTKMSL-DGLIDNEEIIRTAAKWKHPAVAITDHGVIQAFPQIQTLAAKYGQKVIY 354

Query: 72   GCQ--LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            G +  L  ++ +++    Q  +       I+LL     G + L  LV+  +L    K+ +
Sbjct: 355  GMEGYLIDEVPEDIDSDRQQYS------HIILLAKNITGLRNLYRLVTLSHLKYYRKRPL 408

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L+E   +GL+  +    G   RA     S     RL  F      +   N +  
Sbjct: 409  -LPRPLLEEF-RDGLMYGSACVMGEFFRAVLNGDSDEELIRLAKFYDYLEVQPLGNNEFL 466

Query: 190  RGYDRYR-----------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               D+Y              +V+++     +P+ AT+++ +L  E     D+L+      
Sbjct: 467  LYEDKYAAITTKKDLQELNKKVIEIGEKAGIPVCATSDAHYLFAEYARDRDILL------ 520

Query: 239  VVSQKDRPRVTPDH---YLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHA 289
              S  ++P     H   YL+   EM+  FS LP+       + NT  +A +C  I     
Sbjct: 521  --SNWEKPGKIESHPPVYLRTTEEMLEEFSYLPKEKAEEIVITNTRRVAEQCEVI----E 574

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDF 343
            P+               EE +  N  +AG + +L      K          +  R RLD 
Sbjct: 575  PL--------------AEEWKSYNPKIAGADDKLKAMCYEKAVELYGEPLPEIIRDRLDL 620

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----- 398
            EL  I    +   + I    ++ +      VG  RGS   S  A    IT+++PL     
Sbjct: 621  ELTPIINHGYGVLYYIAHKLVKHSNDRGYLVG-SRGSVGSSFVATLAGITEVNPLPPHYV 679

Query: 399  ------------------------------------RFSLLFERFLNPDRMSMPDFDIDF 422
                                                  ++ F  FL  D   +PD D++F
Sbjct: 680  CPHCHWNQFFTDGSVGGGFDLADKKCPNCGTELNKDGHNIPFAVFLGFDGDKVPDIDLNF 739

Query: 423  CQ-DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
               D +    +Y +  +G + V +  T   +Q K A   V R     Y++          
Sbjct: 740  SSGDDQAVAHKYTEELFGRDNVFRAGTIAGIQDKTAFGFVKR-----YAEN--------- 785

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                             R     D  +++L   S  + G+ R    H AGI++  R +  
Sbjct: 786  -----------------RGLTFNDIFIEKL---SAGVAGVKRTTGQHPAGIMVCPRDM-- 823

Query: 542  LVPMYRDVRSDLPVT-QFNMKWIEK------AGLI--KFDFLGLKTLTLLQKSLDFLAQR 592
                  D+ +  P+    N +W++        G I   FD+  +    L    LD L   
Sbjct: 824  ------DIHNFTPLQYAANKRWLKDETGEKIPGTITTHFDYHSISGRML---KLDILGHD 874

Query: 593  GVKV----------DLSLIPFDDHETYHLLTTKGTLGIF--QLESS----GMRQALEGMQ 636
              KV          D   IPF+D +T  L ++   LGI   QL+++    G+     G+ 
Sbjct: 875  DPKVIRMLQDITGIDPLHIPFNDEKTLSLFSSPDALGITSEQLKAAVGDKGITVGAIGLP 934

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQV 695
                  +  ++   RP     +V  +   +G    + +   LI     + +  I  ++ +
Sbjct: 935  EFGTPFVRGMLEDTRPKNFSELVRISGFSHGTNVWLNNARDLITSGKVKLEEAISTRDDI 994

Query: 696  MQI-----AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            M        + L+ + + E   +R+  G + K   + +KE   +   +  I   + ++  
Sbjct: 995  MNYLIEHHVKPLTAFKVMEN--VRKGKGLE-KGNSNNRKELEDARVPQWFIDSCLKIS-- 1049

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN------------ 798
                    Y F ++HA AY +++++ AW K + P+ + AA  T+  +             
Sbjct: 1050 --------YLFPRAHAVAYVMMAFRIAWFKVYEPLAYYAAYFTIRAEGAFNAAVILRGLA 1101

Query: 799  -----------------VEK----IKKFCQDARQFNIQIMPPSVN-TPCVDFKVGDNRIY 836
                             VEK    + +   +     ++ +P  +N +   +F + D  + 
Sbjct: 1102 SQSAELARINSLPHPTAVEKGSATVIEAAAEMYLRGLKFLPIDLNKSSASEFLMEDGALR 1161

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
                 I  +G T A+ I+EA  + PF S ED   R    K+++ +++++   G L
Sbjct: 1162 PPFNCIPALGNTVAKEIVEARREHPFTSKEDLKKR---GKVSQSIIDTMDEMGIL 1213


>gi|153810942|ref|ZP_01963610.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174]
 gi|149832830|gb|EDM87913.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174]
          Length = 1439

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 183/934 (19%), Positives = 340/934 (36%), Gaps = 207/934 (22%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSI-----VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            D+ D   +  QG     T+  +     ++L     G   L +LVS+ +L    ++  R+ 
Sbjct: 579  DIFDMDTLNQQGNVSVNTIKKLPTYHAIILARNETGRVNLYKLVSQSHL-KYYRRRPRVP 637

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNL 186
             S   E   EGL++ +   +G + +A   N+ +    RL+ F      + L  +   +  
Sbjct: 638  KSLFLE-HREGLLIGSACEAGELYQALLRNAPEPEIARLVNFYDYLEIQPLGNNAFMIAD 696

Query: 187  QRHRGYDRYRESQ--------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +++   DR + ++        +V+L    + P+VAT +  F+  +D     ++MA  +  
Sbjct: 697  EKN---DRVKSNEDLIELNKKIVKLGDQFKKPVVATCDVHFMDPQDEIYRRIIMA-GNGF 752

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPIL 292
              +    P      YL+   EM+  FS L         + NT +IA     I  +H    
Sbjct: 753  SDADNQAPL-----YLRTTEEMLEEFSYLGSEKAEEVVITNTNKIADMIEKISPIHPDKF 807

Query: 293  PRFIE---KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
            P  IE   ++  DI     +E+  + +  +                    RL+ EL+ I 
Sbjct: 808  PPVIENSDQDLKDICFNRAHEMYGENLPKI-----------------VEDRLNKELHSII 850

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------- 398
               ++  ++I    +  + ++   VG  RGS   S+ A    IT+++PL           
Sbjct: 851  SNGYAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSLAATMSGITEVNPLPPHYLCPECKY 909

Query: 399  ----------------------------------RFSLLFERFLNPDRMSMPDFDIDFCQ 424
                                               F + FE FL       PD D++F  
Sbjct: 910  SDFDSPEVKKFGGMAGCDMPDKVCPKCGAKMSKEGFDIPFETFLGFKGDKEPDIDLNFSG 969

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + +    RY +  +G  +  +  T G+L  K A   V    +    Q  R C+       
Sbjct: 970  EYQANAHRYTEVIFGKGQTFKAGTIGTLAEKTAFGYVKNYYE-ERGQHKRYCE------- 1021

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQL 542
                                   ++R++   Q   G+ R    H  GI++      + + 
Sbjct: 1022 -----------------------INRIV---QGCTGIRRTTGQHPGGIIVLPVGVEIEKF 1055

Query: 543  VPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ--KSLDFLAQRGVKVD 597
             P+     D  SD+  T F+   I+   L+K D LG    T+++  + L  L+ R V   
Sbjct: 1056 TPVQHPANDENSDIITTHFDYHSID-GNLLKLDILGHDDPTMIRMLEDLTGLSARDV--- 1111

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                P D  E   L  +   LGI   +  G +    G+     +  + ++   +P    +
Sbjct: 1112 ----PLDSKEVMSLFASTDALGIKPEDIGGCKLGCLGVPEFGTDFAMQMLIDTKPKYFSD 1167

Query: 658  IVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V      +G +  + +   LI+         I  ++ +M I  +  G   S A  +  A
Sbjct: 1168 LVRIAGLSHGTDVWLGNAQTLIEEGKATISTAICTRDDIM-IYLISMGVESSLAFTIMEA 1226

Query: 717  M--GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL---AKFADYGFNKSHAAAYAV 771
            +  GK ++EE +                     N+ E      K   Y F K+HAAAY +
Sbjct: 1227 VRKGKGLREEWEATMREH---------------NVPEWYIWSCKKIKYMFPKAHAAAYVM 1271

Query: 772  ISYQTAWMKTHYPVEFLAA------------SMTLEMDNVE------------------- 800
            ++++ AW K   P+ + AA            +M +  D ++                   
Sbjct: 1272 MAWRIAWFKVFKPLAYYAAFFSIRATAFSYETMCMGRDRLDFYLAELRKKGDAASKKEQD 1331

Query: 801  --KIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
              K  +  Q+     ++ MP  +     + F++ D ++  +L  I G+G   A  +++A+
Sbjct: 1332 TIKDMRIVQEMYARGLEFMPIDLYRAKANRFQIIDGKLMPALNCIDGMGDKAAEAVVDAA 1391

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
                F S +DF  R    K    +++ L   G +
Sbjct: 1392 KQGKFLSKDDFRDRTKVSKTVIDLMDDLGIFGDI 1425


>gi|319645959|ref|ZP_08000189.1| PolC protein [Bacillus sp. BT1B_CT2]
 gi|317391709|gb|EFV72506.1| PolC protein [Bacillus sp. BT1B_CT2]
          Length = 1463

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 164/802 (20%), Positives = 289/802 (36%), Gaps = 217/802 (27%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKN 256
            + + +L     +P+VAT N  +L+ ED     +L++    +  +++ + P V    + ++
Sbjct: 719  ANITKLGEKLNIPVVATGNVHYLNPEDKIYRKILVSSQGGANPLNRHELPNV----HFRS 774

Query: 257  RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
              EM+  FS L E  E   EI  + +           R I +  ++I K  +++L    +
Sbjct: 775  TDEMLEAFSFLGE--EKAKEIVVKNT-----------RMISERIEEI-KPIKDDLYTPKI 820

Query: 317  AGL--EVRLAQGAIAKGYHAQDY----RQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
             G   E+R      A+  + +D      +R++ EL  I    F+  +LI    ++ +  +
Sbjct: 821  EGADDEIRRMSYEKARSIYGEDLPEIVEKRIEKELKSIIGHGFAVIYLISHKLVKRSLDD 880

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPL---------RFS-------------------- 401
               VG  RGS   S+ A    IT+++PL         R S                    
Sbjct: 881  GYLVG-SRGSVGSSLVATLTEITEVNPLPPHYVCPDCRHSEFFNDGSVGSGFDLPDKDCP 939

Query: 402  ------------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                        + FE FL      +PD D++F  + +     Y +  +G + V +  T 
Sbjct: 940  KCGAAYRKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHNYTKVLFGEDNVYRAGTI 999

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++  K A           Y  V                 +  A+D+      +    +D
Sbjct: 1000 GTVAEKTA-----------YGYV-----------------KGYANDNNLH---MRGAEID 1028

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------T 556
            RL+   Q   G+ R    H  GI++        VP Y D+    P+             T
Sbjct: 1029 RLV---QGCTGVKRTTGQHPGGIIV--------VPDYMDIYDFSPIQFPADATDSEWKTT 1077

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL---- 612
             F+   I    L+K D LG    T+++   D        +D   IP DD E   +     
Sbjct: 1078 HFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFQGTE 1131

Query: 613  ----------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                         GTLGI +  +  +RQ LE  +P    +++ +  L     +       
Sbjct: 1132 SLGVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHGTDV------- 1184

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA----DVLRRAMG 718
               N +E       LI   + E   VI  ++ +M +  +  G   S A    + +R+  G
Sbjct: 1185 WLGNAQE-------LIHNNICELSEVIGCRDDIM-VYLIYQGLEPSLAFKIMEFVRKGKG 1236

Query: 719  --KKIKEEMDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
               + +EEM      + +I    K                    Y F K+HAAAY +++ 
Sbjct: 1237 LTPEWEEEMKNNNVPDWYIDSCKK------------------IKYMFPKAHAAAYVLMAV 1278

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVNTPC 825
            + A+ K H+P+ + AA  T+  D+ +          I+    D     +   P   +   
Sbjct: 1279 RIAYFKVHHPLLYYAAYFTVRADDFDIETMIKGSTAIRAVMDDINSKGLDASPKEKSLLT 1338

Query: 826  V-------------------------DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
            V                         +F +  N +     +I G+GT  A +I++A  + 
Sbjct: 1339 VLELALEMCERGFSFQKVDLYRSSASEFIIDGNSLIPPFNSIPGLGTNAALNIVKAREEG 1398

Query: 861  PFDSLEDFCSRVDSKKLNRRVL 882
             F S ED   +    K +  +L
Sbjct: 1399 EFLSKEDLQKKRKGVKNDHGIL 1420


>gi|167746785|ref|ZP_02418912.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662]
 gi|167653745|gb|EDR97874.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662]
          Length = 1475

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 171/857 (19%), Positives = 310/857 (36%), Gaps = 179/857 (20%)

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRGYDRY 195
            EGLI+ +   +G +  A     S+    +++ F           ++  +   RH     +
Sbjct: 682  EGLIIGSACEAGELYSAIVDQRSEEEIAKIVEFYDYLEIQPEGNNQFMIESARHENVSSF 741

Query: 196  RE-----SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQKDRPRVT 249
             +      ++V+L  T   P+ AT +  FL  +D     +LMA        SQ       
Sbjct: 742  EDIRNFNRKIVELGETFRKPVAATCDVHFLDPDDSIYRAILMAGKGFKDADSQ------- 794

Query: 250  PDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P  Y +   EM+  F  L   +A E  +    + S  ++  +PI P     +C  + +  
Sbjct: 795  PPLYFRTTEEMLHEFEYLGSDKAREVVITNPNKISDQIENISPIHP----DKCPPVIENS 850

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            + +LR+       +   +     G +  D    RLD ELN I    ++  ++I    +  
Sbjct: 851  DRDLRD-------ICYKKAHDIYGPNLPDIVTTRLDKELNSIIGNGYAVMYIIAQKLVWD 903

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------------- 398
            +  +   VG  RGS   S  A    IT+++PL                            
Sbjct: 904  SLDHGYLVG-SRGSVGSSFAATMSGITEVNPLPAHYICPECYYVDFDSPEVKKYARMGMS 962

Query: 399  -------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL       PD D++F  + + +   YV+  +G
Sbjct: 963  GCDMPDAVCPKCGAKLNKEGHDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHAYVEVIFG 1022

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
              +  +  T G+L  K A   V + L+                                R
Sbjct: 1023 KGKAYRAGTIGTLAEKTAYGYVLKYLEE-------------------------------R 1051

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLP 554
            E       ++RL   ++   G+ R    H  GI++   D+ +     + R   DVRS + 
Sbjct: 1052 EISKRKCEIERL---AKGCTGVKRTTGQHPGGIIVVPHDKEIYDFTAVQRPANDVRSPII 1108

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT 614
             T +    I+ + L+K D LG    +++++  D        V+   IP DD     L   
Sbjct: 1109 TTHYEYHSID-SNLLKLDILGHDDPSMIRRLEDLTG-----VNAQNIPLDDKSVMSLFHG 1162

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-S 673
               LGI   +  G +    G+     + +I ++    P    ++V  +   +G +  + +
Sbjct: 1163 TEVLGITPEQIGGTKLGSLGIPEFGTDFVIQMLLDTNPQSFSDLVRISGLSHGTDVWLGN 1222

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQ--IAQLLS-GYSLSEADVLRRAMGKKIKEEMDKQKE 730
               LI+         I  ++ +M   I Q L    S +  + +R+  G K ++E +  +E
Sbjct: 1223 AQKLIEEGDATISTSICTRDDIMVYLINQGLDEALSFTIMESVRKGKGLKPEQE-EAMRE 1281

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            + +                +    K   Y F K+HA AY +++++ AW K  +P+ + AA
Sbjct: 1282 KDVP-------------EWYIWSCKQIKYMFPKAHAVAYVMMAWRIAWFKVFHPLAYYAA 1328

Query: 791  SMTL----------------------EMDNVEKIK------------KFCQDARQFNIQI 816
              ++                      E+ N  K +            K   +      + 
Sbjct: 1329 YFSIRAKAFSYEDMCMGKEKLNNRMKEIQNTPKFEVKNADLDLLREMKIADEMYARGFEF 1388

Query: 817  MPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            MP  +      DF++ D +I    +AI G+G   A+   EAS  +PF S+E+F  R  + 
Sbjct: 1389 MPLDIYRAKAKDFQIIDGKIMPPYSAIDGMGEKAAKEAAEASKGEPFTSMENFRDRTKTP 1448

Query: 876  KLNRRVLESLVFAGALD 892
            K     ++ L   G L+
Sbjct: 1449 KSVVDKMKELGLMGDLE 1465


>gi|160880751|ref|YP_001559719.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans ISDg]
 gi|160429417|gb|ABX42980.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans ISDg]
          Length = 1527

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 169/845 (20%), Positives = 304/845 (35%), Gaps = 195/845 (23%)

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ---RHRGYDRYRES 198
            EGL++ +   +G + +A   NSS+    RL  F   +  +   N Q        D   E 
Sbjct: 730  EGLLIGSACEAGELYQAILRNSSEGEIVRLANFYDYYEIQPLGNNQFMIESEKIDISSEE 789

Query: 199  Q-------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            +       ++ L   +  P+VAT +  FL+ ED     ++MA    +     D     P 
Sbjct: 790  ELKEINRKIIALGEEYNKPVVATCDVHFLNPEDEVYRRIIMAAKGFS-----DADNQAP- 843

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIA---RRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             Y +   EM+  FS L +     V I    + C  I ++ +P+ P     +C  + ++ +
Sbjct: 844  LYFRTTEEMLEEFSYLGKEKAEEVVITNTNKVCDMIEKI-SPVRP----DKCAPVIEDSD 898

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFI 364
              LR+               A   +  D  +    RL+ EL  I    F+  ++I    +
Sbjct: 899  KTLRDICYEK----------AHSMYGPDLPKIVADRLEHELKSIINNGFAVMYIIAQKLV 948

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFS-------------- 401
              + ++   VG  RGS   S  A    IT+++PL          FS              
Sbjct: 949  WKSNEDGYLVG-SRGSVGSSFAATMSGITEVNPLPAHYYCPNCHFSDFESEEVKAFGSSS 1007

Query: 402  ----------------------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL  +    PD D++F  + + +   Y +  +G
Sbjct: 1008 GCDMPDRDCPVCGQPLAKDGHNIPFETFLGFNGDKEPDIDLNFSGEYQSKAHDYTEVIFG 1067

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
              +  +  T G+L  K A    G A                                ++ 
Sbjct: 1068 KGQTFRAGTIGTLADKTAF---GYA-------------------------------KKYY 1093

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ----LVPMYR---DVRSD 552
            E +     V  +  I +   G+ R    H  GI++   PL +      P+ R   D+ + 
Sbjct: 1094 EEKSVHKRVAEINRIVEGCVGVRRTTGQHPGGIIV--LPLGEEIYSFTPVQRPANDMTTK 1151

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T F+   I+   L+K D LG    T+++   D        +D   I  DD +   L 
Sbjct: 1152 TVTTHFDYHSIDH-NLLKLDILGHDDPTMIRMLEDLTG-----IDAKTIRMDDQKVISLF 1205

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
             +  +LGI   +  G      G+     + ++ ++   +P    +++  +   +G     
Sbjct: 1206 KSTESLGIRPEDIGGCDLGSLGLPELGTDFVMQMLRDTKPQSFSDMIRISGLSHGT---- 1261

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQL----LSGYSLSEADVLRRAMGKKIKEEMDKQ 728
                  D  L  TQ +I   +  +  A      +  Y +SE   +   +  KI E + K 
Sbjct: 1262 ------DVWLNNTQTLISEGKCTLSTAICTRDDIMTYLISEG--VENGLAFKIMESVRKG 1313

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K   ++   +  +      + +    K   Y F K+HA AY +++++ A+ K +YP+ + 
Sbjct: 1314 KG--LTPEMEEAMVANGVPDWYIWSCKRIKYMFPKAHACAYVMMAFRIAYFKVYYPLAYY 1371

Query: 789  AASMTLEM-----------------------------DNVEKIKKFCQD----------- 808
             A  ++                               D  +K+ K  +D           
Sbjct: 1372 TAYFSIRATAFNYELMCLGRERLDYHMAEYKRRMGSNDPAQKLTKKEEDTLKDMKVVQEM 1431

Query: 809  -ARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
             AR F+   +P  V T     F++ D ++  +L+ I G+G   A  ++EA  D  F S +
Sbjct: 1432 YARGFD--FLPIDVYTAKAHHFQIIDGKLMPALSTIDGLGDKAADQVVEAVKDGKFLSRD 1489

Query: 867  DFCSR 871
            DF +R
Sbjct: 1490 DFKTR 1494


>gi|224499902|ref|ZP_03668251.1| DNA polymerase III PolC [Listeria monocytogenes Finland 1988]
          Length = 1444

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 188/912 (20%), Positives = 328/912 (35%), Gaps = 219/912 (24%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +   TA G + L +L++ M  ++   +  RI  S L+++  EGLI+ T  S G +  A 
Sbjct: 622  TIYAQTAVGLKNLFKLIT-MSNINYFYRVPRIPRSQLKKL-REGLIIGTACSQGELFEAM 679

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 Q AEK    +       K ++   +   L R           +V++      P+V
Sbjct: 680  MQKGMQAAEKVAEFYDFIEVQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVV 739

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE 272
            AT N  +    D     +L+   HS   +        PD + +   EM+  F+ L E   
Sbjct: 740  ATGNVHYKDPVDKIYRKILI---HSQGGANPLNRAELPDVHFRTTDEMLKEFAFLGE--- 793

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE--VRLAQGAIAK 330
                   +   I+  +A ++  ++E       K  ++EL    + G E  VR    A+A 
Sbjct: 794  ------EKAKEIVVTNANLVVDWMEN-----LKPIKDELYTPKIDGAEDEVRNMSYAMAH 842

Query: 331  GYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
              + +   +    RL+ EL  I    F+  +LI    ++ +  +   VG  RGS   S  
Sbjct: 843  QLYGEKLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRGSVGSSFV 901

Query: 387  AYALTITDIDPLRFSLL-----------------------------------------FE 405
            A    IT+++PL    L                                         FE
Sbjct: 902  ATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPDKDCTHCGTAYQKEGQDIPFE 961

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA---LRDVG 462
             FL      +PD D++F  D +     Y +  +G + V +  T G++  K A   +R+  
Sbjct: 962  TFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFRAGTIGTVAEKTAFGYVRNYE 1021

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            R + M                                   +    +DRL+       G+ 
Sbjct: 1022 RDMNM----------------------------------TIRGAEIDRLV---AGCTGVK 1044

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLI 569
            R    H  GI++        +P Y DV    PV             T F+   I    ++
Sbjct: 1045 RTTGQHPGGIIV--------IPDYMDVYDFTPVQFPADATDSEWKTTHFDFHSIHD-NVL 1095

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTK 615
            K D LG    T ++   D        +D   IP DD +   L               +  
Sbjct: 1096 KLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPDVMKLFGSTESLGVKPADIDSKT 1150

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
            GTLGI +  +  +RQ LE  +P    +++ +  L       ++ + N  +  K K   + 
Sbjct: 1151 GTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG---TDVWLGNAEELIKNKTCEL- 1206

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            P +     +    +IYQ        L S  +    + +R+  GK + +EM++        
Sbjct: 1207 PDVIGCRDDIMVFLIYQ-------GLESSLAFKIMESVRK--GKGLTDEMEEAM------ 1251

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                 ++  + +   E   K   Y F K+HAAAY +++ + A+ K HYP+ F A   T+ 
Sbjct: 1252 -----MANKVPLWYIESCKKIK-YMFPKAHAAAYVLMAVRIAYFKVHYPLYFYATYFTVR 1305

Query: 796  MDNV---------EKIKKFCQD--------------------------ARQFNIQIMPPS 820
             D+          E +K   ++                          AR F+ Q +   
Sbjct: 1306 ADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQKV-DL 1364

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
              +   +F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    K+++ 
Sbjct: 1365 YKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---GKVSKT 1421

Query: 881  VLESLVFAGALD 892
            +++ +   G L+
Sbjct: 1422 IIQYMDDQGCLE 1433


>gi|168184630|ref|ZP_02619294.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum Bf]
 gi|182672306|gb|EDT84267.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum Bf]
          Length = 1432

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 187/902 (20%), Positives = 325/902 (36%), Gaps = 201/902 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +++LV  A G + L +LVS+  L    K+  R+  S + E   EGLI+ +   +G I + 
Sbjct: 609  LIILVKNAVGLKNLYKLVSKSNLEYFFKRP-RMAKSLINEY-KEGLIIGSACEAGQIYKE 666

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
                 ++   K ++ F      + L  +   V     +      E   ++ +L   +  P
Sbjct: 667  ILKGKTKEELKNMIDFYDYLEIQPLGNNEFLVKNGSVKDEKELEEINKKICELGEFYNKP 726

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
            +VAT +  FL EE      +LM+       S  D     P  Y +   EM+  F  L E 
Sbjct: 727  VVATCDVHFLDEEHEVFRRILMS---GQGFSDADN---QPPLYFRTTEEMLKEFEYLGEE 780

Query: 270  -----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
                  + NT +IA     I  +     P  IE   +DI++             + +  A
Sbjct: 781  KAKEVVIYNTNKIADMIDEIKPIPEETFPPKIEGAEEDIRR-------------MTIEKA 827

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              AI      +   +RL  ELN I    ++  +LI    +  + ++   VG  RGS   S
Sbjct: 828  H-AIYGDPLPEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SRGSVGSS 885

Query: 385  VTAYALTITDIDPL---------RFS--------------------------------LL 403
              A    IT+++ L         ++S                                + 
Sbjct: 886  FAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIKDGHDIP 945

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A   V +
Sbjct: 946  FETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTAYGFVKK 1005

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             L                                 +  +  +  ++RL   S+   G+ R
Sbjct: 1006 YLDE-------------------------------KNIKANNAEIERL---SKGCTGVKR 1031

Query: 524  HASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
             +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D LG   
Sbjct: 1032 TSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSIS-GRLLKLDILGHDD 1090

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLE 624
             T+L+     + Q   +VD   +P  D +   L T+               GT G+ +  
Sbjct: 1091 PTVLR-----MLQDLTQVDPKSVPLGDPKVISLFTSPEALGVTEEDIDCPVGTYGLPEFG 1145

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +  +RQ L   +P    +++ +  L       ++ + N +   KE   +I   I      
Sbjct: 1146 TKFVRQMLLDTKPKSFAELVRISGLSHGT---DVWLNNAQYFIKEGYTTIKDCIST---- 1198

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK-QKERFISGASKNGISK 743
               +++Y  Q     +L    + +  + +R+  GK + EE +   KE  +         K
Sbjct: 1199 RDDIMVYLLQ----KELPPKSAFTIMEKVRK--GKGLTEEQEALMKEHDVPDWYIESCKK 1252

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---- 799
                           Y F K HA AY +++ + A+ K +YP  + A   ++  D+     
Sbjct: 1253 I-------------KYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADL 1299

Query: 800  -----EKIKKFCQDARQFNIQIMPPS-------------------------VNTPCVDFK 829
                 EKIK+   +       I                               +    F 
Sbjct: 1300 IVKGEEKIKEKMNELYAMGNNITQKDKGLLTILEISYEMYKRGIKFLKVDLYKSNATKFL 1359

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +  + I   L+A++GVG   A+ I E+  +  F S ED   R    K+ + V+E+L   G
Sbjct: 1360 IEGDSIRPPLSALQGVGKNAAKSIEESRLEGEFISKEDLRLRT---KVTKTVIETLENHG 1416

Query: 890  AL 891
             L
Sbjct: 1417 CL 1418


>gi|254828680|ref|ZP_05233367.1| polC [Listeria monocytogenes FSL N3-165]
 gi|254829923|ref|ZP_05234578.1| DNA polymerase III PolC [Listeria monocytogenes 10403S]
 gi|254898515|ref|ZP_05258439.1| DNA polymerase III PolC [Listeria monocytogenes J0161]
 gi|254911994|ref|ZP_05262006.1| DNA polymerase III [Listeria monocytogenes J2818]
 gi|254936321|ref|ZP_05268018.1| polC [Listeria monocytogenes F6900]
 gi|255026351|ref|ZP_05298337.1| DNA polymerase III PolC [Listeria monocytogenes FSL J2-003]
 gi|284801705|ref|YP_003413570.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578]
 gi|284994847|ref|YP_003416615.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923]
 gi|258601084|gb|EEW14409.1| polC [Listeria monocytogenes FSL N3-165]
 gi|258608911|gb|EEW21519.1| polC [Listeria monocytogenes F6900]
 gi|284057267|gb|ADB68208.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578]
 gi|284060314|gb|ADB71253.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923]
 gi|293589958|gb|EFF98292.1| DNA polymerase III [Listeria monocytogenes J2818]
          Length = 1444

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 188/912 (20%), Positives = 328/912 (35%), Gaps = 219/912 (24%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +   TA G + L +L++ M  ++   +  RI  S L+++  EGLI+ T  S G +  A 
Sbjct: 622  TIYAQTAVGLKNLFKLIT-MSNINYFYRVPRIPRSQLKKL-REGLIIGTACSQGELFEAM 679

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 Q AEK    +       K ++   +   L R           +V++      P+V
Sbjct: 680  MQKGMQAAEKVAEFYDFIEVQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVV 739

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE 272
            AT N  +    D     +L+   HS   +        PD + +   EM+  F+ L E   
Sbjct: 740  ATGNVHYKDPVDKIYRKILI---HSQGGANPLNRAELPDVHFRTTDEMLKEFAFLGE--- 793

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE--VRLAQGAIAK 330
                   +   I+  +A ++  ++E       K  ++EL    + G E  VR    A+A 
Sbjct: 794  ------EKAKEIVVTNANLVVDWMEN-----LKPIKDELYTPKIDGAEDEVRNMSYAMAH 842

Query: 331  GYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
              + +   +    RL+ EL  I    F+  +LI    ++ +  +   VG  RGS   S  
Sbjct: 843  QLYGEKLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRGSVGSSFV 901

Query: 387  AYALTITDIDPLRFSLL-----------------------------------------FE 405
            A    IT+++PL    L                                         FE
Sbjct: 902  ATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPDKDCPHCGTAYQKEGQDIPFE 961

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA---LRDVG 462
             FL      +PD D++F  D +     Y +  +G + V +  T G++  K A   +R+  
Sbjct: 962  TFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFRAGTIGTVAEKTAFGYVRNYE 1021

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            R + M                                   +    +DRL+       G+ 
Sbjct: 1022 RDMNM----------------------------------TIRGAEIDRLV---AGCTGVK 1044

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLI 569
            R    H  GI++        +P Y DV    PV             T F+   I    ++
Sbjct: 1045 RTTGQHPGGIIV--------IPDYMDVYDFTPVQFPADATDSEWKTTHFDFHSIHD-NVL 1095

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTK 615
            K D LG    T ++   D        +D   IP DD +   L               +  
Sbjct: 1096 KLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPDVMKLFGSTESLGVKPADIDSKT 1150

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
            GTLGI +  +  +RQ LE  +P    +++ +  L       ++ + N  +  K K   + 
Sbjct: 1151 GTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG---TDVWLGNAEELIKNKTCEL- 1206

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            P +     +    +IYQ        L S  +    + +R+  GK + +EM++        
Sbjct: 1207 PDVIGCRDDIMVFLIYQ-------GLESSLAFKIMESVRK--GKGLTDEMEEAM------ 1251

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                 ++  + +   E   K   Y F K+HAAAY +++ + A+ K HYP+ F A   T+ 
Sbjct: 1252 -----MANKVPLWYIESCKKIK-YMFPKAHAAAYVLMAVRIAYFKVHYPLYFYATYFTVR 1305

Query: 796  MDNV---------EKIKKFCQD--------------------------ARQFNIQIMPPS 820
             D+          E +K   ++                          AR F+ Q +   
Sbjct: 1306 ADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQKV-DL 1364

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
              +   +F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    K+++ 
Sbjct: 1365 YKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---GKVSKT 1421

Query: 881  VLESLVFAGALD 892
            +++ +   G L+
Sbjct: 1422 IIQYMDDQGCLE 1433


>gi|237795859|ref|YP_002863411.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum Ba4 str. 657]
 gi|229260819|gb|ACQ51852.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum Ba4 str. 657]
          Length = 1432

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 187/902 (20%), Positives = 325/902 (36%), Gaps = 201/902 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +++LV  A G + L +LVS+  L    K+  R+  S + E   EGLI+ +   +G I + 
Sbjct: 609  LIILVKNAVGLKNLYKLVSKSNLEYFFKRP-RMAKSLINEY-KEGLIIGSACEAGQIYKE 666

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
                 ++   K ++ F      + L  +   V     +      E   ++ +L   +  P
Sbjct: 667  ILKGKTKEELKNMIDFYDYLEIQPLGNNEFLVKNGSVKDEKELEEINKKICELGEFYNKP 726

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
            +VAT +  FL EE      +LM+       S  D     P  Y +   EM+  F  L E 
Sbjct: 727  VVATCDVHFLDEEHEVFRRILMS---GQGFSDADN---QPPLYFRTTEEMLKEFEYLGEE 780

Query: 270  -----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
                  + NT +IA     I  +     P  IE   +DI++             + +  A
Sbjct: 781  KAKEVVIYNTNKIADMIDEIKPIPEETFPPKIEGAEEDIRR-------------MTIEKA 827

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              AI      +   +RL  ELN I    ++  +LI    +  + ++   VG  RGS   S
Sbjct: 828  H-AIYGDPLPEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SRGSVGSS 885

Query: 385  VTAYALTITDIDPL---------RFS--------------------------------LL 403
              A    IT+++ L         ++S                                + 
Sbjct: 886  FAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIKDGHDIP 945

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A   V +
Sbjct: 946  FETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTAYGFVKK 1005

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             L                                 +  +  +  ++RL   S+   G+ R
Sbjct: 1006 YLDE-------------------------------KNIKANNAEIERL---SKGCTGVKR 1031

Query: 524  HASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
             +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D LG   
Sbjct: 1032 TSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSIS-GRLLKLDILGHDD 1090

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLE 624
             T+L+     + Q   +VD   +P  D +   L T+               GT G+ +  
Sbjct: 1091 PTVLR-----MLQDLTQVDPKSVPLGDPKVISLFTSPEALGVTEEDIDCPVGTYGLPEFG 1145

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +  +RQ L   +P    +++ +  L       ++ + N +   KE   +I   I      
Sbjct: 1146 TKFVRQMLLDTKPKSFAELVRISGLSHGT---DVWLNNAQYFIKEGYTTIKDCIST---- 1198

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK-QKERFISGASKNGISK 743
               +++Y  Q     +L    + +  + +R+  GK + EE +   KE  +         K
Sbjct: 1199 RDDIMVYLLQ----KELPPKSAFTIMEKVRK--GKGLTEEQEALMKEHDVPDWYIESCKK 1252

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---- 799
                           Y F K HA AY +++ + A+ K +YP  + A   ++  D+     
Sbjct: 1253 I-------------KYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADL 1299

Query: 800  -----EKIKKFCQDARQFNIQIMPPS-------------------------VNTPCVDFK 829
                 EKIK+   +       I                               +    F 
Sbjct: 1300 IVKGEEKIKEKMNELYAMGNNITQKDKGLLTILEISYEMYKRGIKFLKVDLYKSNATKFL 1359

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +  + I   L+A++GVG   A+ I E+  +  F S ED   R    K+ + V+E+L   G
Sbjct: 1360 IEGDSIRPPLSALQGVGKNAAKSIEESRLEGEFISKEDLRLRT---KVTKTVIETLENHG 1416

Query: 890  AL 891
             L
Sbjct: 1417 CL 1418


>gi|160934103|ref|ZP_02081490.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753]
 gi|156866776|gb|EDO60148.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753]
          Length = 1451

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 184/911 (20%), Positives = 333/911 (36%), Gaps = 217/911 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++LV  + G + L +L+S  +L D   +  RI  S L +   EGL++ +   +G + RA 
Sbjct: 627  IILVKNSTGLKNLYKLISYAHL-DYFYKKPRIPKSVLMK-HREGLLIGSACEAGELFRAI 684

Query: 160  FFNSSQVAEKRLLTFKKLF--------GDRLYV-------NLQRHRGYDRYRESQVVQLA 204
                S      L++  K +        G+ +++         ++ R ++R     V++L 
Sbjct: 685  V---SGQPWNELVSIAKFYDYLEIQPLGNNMFMLRDGTVQTEEQLREFNR----TVIKLG 737

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
                 P+VAT +  F+   D +   +LMA    T   Q+      P +Y +   EM+  F
Sbjct: 738  QELNKPVVATCDVHFMDPHDSDYRKILMAGQGFTDADQQ-----APLYY-RTTPEMLQEF 791

Query: 265  SDL--PEALENTVEIARRCSFILQVHAPI----LPRFI---EKECDDIQKEEENELRNKA 315
            + L   +A E  VE   + + +++  +PI     P FI   E++   I  E   ++    
Sbjct: 792  AYLGKEKAYEVVVENPNKIADMVEEVSPIPPGVFPPFIDGAEEQLTTITWERAKKMYGDP 851

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
            +  +                    RLD EL+ I +  FS  ++     +  ++ +   VG
Sbjct: 852  LPKI-----------------VYDRLDRELSSITKHGFSVLYMTAQKLVADSEAHGYLVG 894

Query: 376  PGRGSGAGSVTAYALTITDIDPL------------------------------------- 398
              RGS   S  A    I++++PL                                     
Sbjct: 895  -SRGSVGSSFVATMSGISEVNPLCPHYVCPKCHHSEFITDGSVGSGFDLPDKNCPECGTP 953

Query: 399  ----RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D    PD D++F  + + +  RY +  +G + V +  T  ++  
Sbjct: 954  YHRDGHDIPFETFLGFDGDKTPDIDLNFSGEYQSDAHRYTETLFGKDNVFKAGTIATVAE 1013

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K  +  V +  +   + + R                         EARLA          
Sbjct: 1014 KTGIGFVKKYAESKGTMMHRA-----------------------EEARLA---------- 1040

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYR---DVRSDLPVTQFNMKWIEKAGLI 569
                 G+ R    H  G+V+  R +      P+     D  SD   T F+   I    + 
Sbjct: 1041 -AGCTGVKRTTGQHPGGMVVVPRGMEVYDFCPVQHPANDQNSDNITTHFDFHSIHDT-IC 1098

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI--------- 620
            K D LG    T+ +   D+     + V +S     D E   L T+   LG+         
Sbjct: 1099 KLDELGHDVPTIYRYLEDYTGINVMDVSMS-----DPEVMSLFTSTKALGVEPEDIDSQT 1153

Query: 621  --FQLESSG---MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
              F L   G   +RQ L   QP    D++ +  L     +          N ++ I +  
Sbjct: 1154 GTFSLPEVGTHFVRQMLIDSQPKTFSDLLQVSGLSHGTDV-------WIGNAQDLIANKT 1206

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
              I  ++     ++ Y    +    L    +    ++ R+   KK+  E   Q  R    
Sbjct: 1207 CTISEVIGTRDSIMTY----LLHKGLEPKMAFKIMEITRKGKAKKLLTEEHYQAMR---- 1258

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
               +G+ +    +  ++      Y F K+HAAAY + + +  W K H PVE+ AA  T+ 
Sbjct: 1259 --DHGVPEWYIESCLKI-----KYMFPKAHAAAYMISTLRLGWYKVHRPVEYYAAYFTVR 1311

Query: 796  MDNVE-------------KIKKFCQDARQFN--------------------IQIMPPSV- 821
             ++ +             K+ +  Q  ++ +                    I+++P  + 
Sbjct: 1312 GEDFDAAVVVKGKEAVRAKMLEIQQKGKEASAKDNASYATLQIVNEMLARGIEVLPIDIY 1371

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRR 880
             +    + V D +I     ++ GVG   A  +  A  +   F S++DF +R    K+ + 
Sbjct: 1372 KSDARKYLVEDGKIRLPFGSLPGVGGAAAASLAAARENGGEFISVDDFQARA---KVGKA 1428

Query: 881  VLESLVFAGAL 891
            V+E+L   GA 
Sbjct: 1429 VIETLKETGAF 1439


>gi|312127164|ref|YP_003992038.1| DNA polymerase III subunit alpha [Caldicellulosiruptor hydrothermalis
            108]
 gi|311777183|gb|ADQ06669.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
            hydrothermalis 108]
          Length = 1402

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 134/648 (20%), Positives = 227/648 (35%), Gaps = 173/648 (26%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            R RL+ ELN I +  F+  +LI    +  +  +   VG  RGS   S+ A    IT+++P
Sbjct: 812  RARLEKELNSIIKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVGSSLVATMCGITEVNP 870

Query: 398  L---------RFS--------------------------------LLFERFLNPDRMSMP 416
            L         ++S                                + FE FL  D    P
Sbjct: 871  LPPHYVCPNCKYSEFITDGSVGCGYDLEDKNCPRCGKKLKKDGHDIPFETFLGFDGDKEP 930

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D++F  D +    ++ +  +G   V +  T  ++  K A           Y++   L 
Sbjct: 931  DIDLNFSGDYQPIAHKFTEELFGQGYVFRAGTISTVAEKTA-----HGFVTKYAEEKGL- 984

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI-- 534
                    HP                        +L +SQ   G+ R    H  G++I  
Sbjct: 985  ------NLHPA----------------------EILRLSQGCTGVKRTTGQHPGGLMIVP 1016

Query: 535  GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             D+ +    P+     S    +  T F+   I    L+K D LG    T+++     + Q
Sbjct: 1017 RDKEIFDFTPIQHPADSGDKSVITTHFDYHAI-SGRLLKLDILGHDDPTVIR-----MLQ 1070

Query: 592  RGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQP 637
                VD   IP DD +T  + T+               GT GI +  +  +RQ L   +P
Sbjct: 1071 DLTGVDPRSIPLDDKDTMSIFTSTEALGISPEDIDCEVGTFGIPEFGTRFVRQMLIETKP 1130

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQE 693
                +++ +  L       N+   N +   +  I ++  +I    D ML   Q  +  ++
Sbjct: 1131 KTFAELVRISGLSHGT---NVWTNNAQDLVRNGIATLKEVISTRDDIMLYLIQKGVPPKD 1187

Query: 694  QVMQIAQLLSGYSLS-EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
                +  +  G  L  E + L RA             + +I    K              
Sbjct: 1188 SFRIMEDVRKGKGLKPEDEQLLRAHN---------VPDWYIESCKK-------------- 1224

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------ 800
                  Y F K+HAAAY +++++ A+ K HY   F A   T+  D+ +            
Sbjct: 1225 ----ITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYFTVRADDFDYATILKGRDAIR 1280

Query: 801  --------KIKKFCQDARQF-------------NIQIMPPSVNTPCVD-FKVGDNRIYYS 838
                    +I    Q  +                ++  P  +N    + F + D  +   
Sbjct: 1281 QKIRDLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAERFIIKDGGLLIP 1340

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
              A+  VG   A+ I+EA  +  F S++D   R    KLN++V+E L 
Sbjct: 1341 FNALPNVGVAAAKSIVEARKEGRFLSVDDLIRRA---KLNKQVIEILT 1385


>gi|16803360|ref|NP_464845.1| DNA polymerase III PolC [Listeria monocytogenes EGD-e]
 gi|21263551|sp|Q8Y7G1|DPO3_LISMO RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|16410736|emb|CAC99398.1| polC [Listeria monocytogenes EGD-e]
          Length = 1444

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 166/785 (21%), Positives = 285/785 (36%), Gaps = 180/785 (22%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +   TA G + L +L++ M  ++   +  RI  S L+++  EGLI+ T  S G +  A 
Sbjct: 622  TIYAQTAVGLKNLFKLIT-MSNINYFYRVPRIPRSQLKKL-REGLIIGTACSQGELFEAM 679

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 Q AEK    +       K ++   +   L R           +V++      P+V
Sbjct: 680  MQKGMQAAEKVAEFYDFIEVQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVV 739

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE 272
            AT N  +    D     +L+   HS   +        PD + +   EM+  F+ L E   
Sbjct: 740  ATGNVHYKDPVDKIYRKILI---HSQGGANPLNRAELPDVHFRTTDEMLKEFAFLGE--- 793

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE--VRLAQGAIAK 330
                   +   I+  +A ++  ++E       K  ++EL    + G E  VR    A+A 
Sbjct: 794  ------EKAKEIVVTNANLVVDWMEN-----LKPIKDELYTPKIDGAEDEVRNMSYAMAH 842

Query: 331  GYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
              + +   +    RL+ EL  I    F+  +LI    ++ +  +   VG  RGS   S  
Sbjct: 843  QLYGEKLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRGSVGSSFV 901

Query: 387  AYALTITDIDPLRFSLL-----------------------------------------FE 405
            A    IT+++PL    L                                         FE
Sbjct: 902  ATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPDKDCPHCGTAYQKEGQDIPFE 961

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA---LRDVG 462
             FL      +PD D++F  D +     Y +  +G + V +  T G++  K A   +R+  
Sbjct: 962  TFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFRAGTIGTVAEKTAFGYVRNYE 1021

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            R + M                                   +    +DRL+       G+ 
Sbjct: 1022 RDMNM----------------------------------TIRGAEIDRLV---AGCTGVK 1044

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLI 569
            R    H  GI++        +P Y DV    PV             T F+   I    ++
Sbjct: 1045 RTTGQHPGGIIV--------IPDYMDVYDFTPVQFPADATDSEWKTTHFDFHSIHD-NVL 1095

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTK 615
            K D LG    T ++   D        +D   IP DD +   L               +  
Sbjct: 1096 KLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPDVMKLFGSTESLGVKPADIDSKT 1150

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
            GTLGI +  +  +RQ LE  +P    +++ +  L       ++ + N  +  K K   + 
Sbjct: 1151 GTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG---TDVWLGNAEELIKNKTCEL- 1206

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            P +     +    +IYQ        L S  +    + +R+  GK + +EM++        
Sbjct: 1207 PDVIGCRDDIMVFLIYQ-------GLESSLAFKIMESVRK--GKGLTDEMEEAM------ 1251

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                 ++  + +   E   K   Y F K+HAAAY +++ + A+ K HYP+ F A   T+ 
Sbjct: 1252 -----MANKVPLWYIESCKKIK-YMFPKAHAAAYVLMAVRIAYFKVHYPLYFYATYFTVR 1305

Query: 796  MDNVE 800
             D+ +
Sbjct: 1306 ADDFD 1310


>gi|312865553|ref|ZP_07725780.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            downei F0415]
 gi|311099071|gb|EFQ57288.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            downei F0415]
          Length = 1468

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 157/770 (20%), Positives = 286/770 (37%), Gaps = 181/770 (23%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVS------QKDRPRVTPDHYLKNRSEMVS 262
            P++AT +  +L  ED    ++++ ++    +++      +  +P   PD + +  +EM+ 
Sbjct: 739  PVLATGDVHYLEPEDQLYREIIVRSLGPGALINRPIGRGEGAQPAPLPDAHFRTTNEMLD 798

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
             F+ L E L   + +     F  Q        F E E        + +L    +   E  
Sbjct: 799  DFAFLGEDLAYEIVVTNTQKFAEQ--------FEEVEV------VKTDLYTPYIDKAEET 844

Query: 323  LAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            +A+   A+ +            +R++ EL  I    F+  +L     +  + K    VG 
Sbjct: 845  VAEKTYARAFEIYGNPLPDIIDRRIEKELTSILGNGFAVIYLASQMLVDRSNKRGYLVG- 903

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFS-------------------------- 401
             RGS   S  A  + IT+++P+         ++S                          
Sbjct: 904  SRGSVGSSFVATMIGITEVNPMPPHYVCPECQYSEFIADGSVGSGFDLPDKDCPNCGHKL 963

Query: 402  ------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K
Sbjct: 964  TKDGHDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEEYAFRAGTVGTVAEK 1023

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V +  +  Y++                          +REA      VDRL   S
Sbjct: 1024 TAYGFV-KGYERDYNKF-------------------------YREAE-----VDRLAMGS 1052

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GIV+        +P Y DV    PV             T FN   
Sbjct: 1053 A---GVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDTSAEWQTTHFNFHD 1101

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            I++  ++K D LG    T+++K  D        +D S IP DD +   L +    LG+ +
Sbjct: 1102 IDE-NVLKLDILGHDDPTMIRKLQDLSG-----IDPSQIPADDPDVMKLFSGTDVLGVTE 1155

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPM 681
             E  G    + G+       +  +V+   P     ++  +   +G +  + +   LI   
Sbjct: 1156 -EQIGTPTGMLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKEG 1214

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVL----RRAMGKKIKEEMDKQKERFISGAS 737
            +   + VI  ++ +M +  + +G     A ++    R+ M  KI EE   ++  +I    
Sbjct: 1215 IATLKTVIGCRDDIM-VYLMHAGLEPKMAFIIMERVRKGMWLKIPEE---ERNGYIQAMR 1270

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA------- 790
             N +         E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A       
Sbjct: 1271 DNNVPDWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIRAK 1325

Query: 791  -----SMTLEMDNV----EKIKKFCQDARQFNIQIMPPSV-------------------- 821
                 +M+  +D V    E I    ++    N++I   +                     
Sbjct: 1326 AFELKTMSAGLDAVKARMEDIASKRKNNEASNVEIDLYTTLEIVNEMLERGYKFGQLDLY 1385

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            N+   +FK+  + +     A+ G+G   A+ I+ + AD  F S  +   R
Sbjct: 1386 NSEASEFKIEGDTLIPPFVAMDGLGENVAKQIVASRADGEFLSKTELRKR 1435



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++  ++DK A+   PAIAITD  N+ S      +A  AGI+ I 
Sbjct: 344 VEFHAHTNMSTMDALPTVEELIDKAASWGHPAIAITDHANVQSFPHGYHRAKKAGIKAIF 403

Query: 72  GCQLDIDMQDNLKMT 86
           G + +I ++D + +T
Sbjct: 404 GLEANI-VEDRVPIT 417


>gi|164688523|ref|ZP_02212551.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM 16795]
 gi|164602936|gb|EDQ96401.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM 16795]
          Length = 1432

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 134/654 (20%), Positives = 244/654 (37%), Gaps = 170/654 (25%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            ++RLD ELN I    ++  ++I    +  +  +   VG  RGS   S+ A    IT+++P
Sbjct: 839  KKRLDRELNSIISNGYAVMYIIAQKLVTKSLADGYLVG-SRGSVGSSLAATMSDITEVNP 897

Query: 398  L-----------RFSLL--------------------------------FERFLNPDRMS 414
            L           ++S                                  FE FL  +   
Sbjct: 898  LPAHYICENEDCKYSYFYAVGEWGSGVDLPDKDCPKCGRKLKKDGHDIPFEVFLGFEGDK 957

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D++F    +  + +Y +  +G   V +  T G++  K A     + ++        
Sbjct: 958  EPDIDLNFSGSYQPVIHKYTEELFGEGHVYRAGTIGTVADKTAYGYAKKYVE-------- 1009

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
                                     E  L  PS + +L +++   G+ R +  H  G+++
Sbjct: 1010 -------------------------ENDLDVPSAE-VLRLAKGCTGVKRTSGQHPGGVMV 1043

Query: 535  --GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
                + +  + P+     DV   +  T F+   I    ++K D LG    T+++   D  
Sbjct: 1044 IPNYKEVYDITPIQYPANDVNCGVITTHFDYHSIS-GRILKLDILGHDVPTIIRMIEDIT 1102

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGM 635
                  +D + IP DD ET  + T+               G+L I +  +S +RQ L   
Sbjct: 1103 G-----LDATTIPLDDKETMSIFTSTEALGVTPEEINCPIGSLAIPEFGTSFVRQMLLDT 1157

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            +P    +++ +  L         V  NN ++          L+   + E + VI  ++ +
Sbjct: 1158 KPTTFAELVRISGLSHGTD----VWLNNAQD----------LVVDKVVEFKDVISTRDDI 1203

Query: 696  MQIAQLLSGYSLSEADVLRRAM--GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            M    L  G     A  +   +  GK +K E       FI   +K+ + +    +  ++ 
Sbjct: 1204 MNYL-LFKGLPPKMAFTIMENVRKGKGLKPE-------FIEEMNKHDVPQWYVDSCQKI- 1254

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN--------------- 798
                 Y F K+HA AY ++S++ A+ K HYP  F A   T +  +               
Sbjct: 1255 ----KYMFPKAHAVAYVMMSFRLAYYKVHYPAAFYATYFTTKAQDFDADLIVGGLDSIKQ 1310

Query: 799  -VEKIKKFCQDARQFN-----------------IQIMPPSV-NTPCVDF-KVGDNRIYYS 838
             + +I +   DA   +                 I+I+P  +  +    F  V D+ I   
Sbjct: 1311 KINEIHELGNDATAKDKTMLTVLEVALEMYARKIKIIPVDIYKSDATKFIVVDDSTILPP 1370

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            + A++GVG   A +I +      F S ED   R    K+++ V+E+L   G+L+
Sbjct: 1371 MIALQGVGENAAINIQKERESGEFISKEDLRKRT---KISKTVVETLSNHGSLN 1421


>gi|28210957|ref|NP_781901.1| DNA polymerase III PolC [Clostridium tetani E88]
 gi|32469700|sp|Q895K2|DPO3_CLOTE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|28203396|gb|AAO35838.1| DNA polymerase III, alpha chain [Clostridium tetani E88]
          Length = 1427

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 186/927 (20%), Positives = 348/927 (37%), Gaps = 204/927 (22%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            ++++M +     NQ     PT   +++LV    G + L +L+S  +L +   +  R+  S
Sbjct: 581  MNLNMLNEEYFKNQDIKKSPTY-HVIILVKNKIGLKNLYKLISESHL-NHFYKKPRMPKS 638

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQR 188
             + +   EGL++ +   +G + +    + S+   K +++F      + +  +   +    
Sbjct: 639  LINKY-REGLMIGSACEAGQVYKEVLMDKSKEELKEVISFYDYLEIQPIKNNYFMIRNGI 697

Query: 189  HRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQKDR 245
             +  +  R+   ++  LA  + +P+VAT +  FL ++D     +LMA    S   +Q   
Sbjct: 698  VKDEEELRDINKKIYNLAEENNMPVVATCDVHFLDKKDEVFRKILMAGQGFSDAENQ--- 754

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKE 299
                P  YL+   EM+  F  L +       + NTV+IA     I  +     P  IE  
Sbjct: 755  ----PPLYLRTTDEMLKEFEYLGKEKAYKAVVTNTVKIADSIDNIKPIPDETFPPKIEGS 810

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             ++++K             + +  A  +I      +   +RL+ ELN I    ++  +LI
Sbjct: 811  EEEVRK-------------MTIEKAH-SIYGEVLPEIVEKRLEKELNSIINNGYAVLYLI 856

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--------------------- 398
                +  + ++   VG  RGS   S+ A    IT+++ L                     
Sbjct: 857  AHKLVDKSVQDGYLVG-SRGSVGSSLVATMTDITEVNGLPPHYVCPGCKYNEFITDGSVS 915

Query: 399  --------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
                                   + FE FL  +    PD D++F  + +  V +Y +  +
Sbjct: 916  SGADLPDKNCPNCGVLLSKDGHDIPFETFLGFEGDKEPDIDLNFSGEYQAVVHKYTEVLF 975

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G  +V +  T G++  K A   V + +                             D   
Sbjct: 976  GEGKVFKAGTIGTIAEKTAYGFVKKYIS--------------------------EKDLNV 1009

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDL 553
            R+A      ++RL   +    G+ R    H  GI++   D  +    P+ R   D  +D+
Sbjct: 1010 RQAE-----IERL---TLGCSGVKRTTGQHPGGIMVVPQDNEIFNFTPIQRPADDNDTDI 1061

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
              T F+   I    L+K D LG    T+L+     + Q    VD   IP  D +   L T
Sbjct: 1062 ITTHFDYHSIS-GRLLKLDILGHDDPTVLR-----MLQDLTGVDPKKIPLADPKVMSLFT 1115

Query: 614  TK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            +               GT G+ +  +  +RQ L   QP+   D++ +  L       ++ 
Sbjct: 1116 SPKALGVNAEELKCEVGTYGLPEFGTKFVRQMLVDTQPNSFSDLVRISGLSHGT---DVW 1172

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            + N +   KE   ++   I     +    +I ++   +IA     +++ E   +R+  GK
Sbjct: 1173 LNNAQYYIKEGYTTLKDCI-ATRDDIMTYLIQKDLPPKIA-----FTIMEK--VRK--GK 1222

Query: 720  KIKEEMDK-QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             + EE +   +E  + G       K               Y F K HA AY +++ + A+
Sbjct: 1223 GLTEEHEAIMREHDVPGWYIESCKKI-------------KYMFPKGHAVAYVMMAVRIAY 1269

Query: 779  MKTHY---------------------------------PVEFLAASMTLEMDNVEKIKKF 805
             K +Y                                  +  L  ++T +   +  + + 
Sbjct: 1270 FKVYYPTAYYATYFSVRASDFDAETVFKGEEAILNKIDEINSLGNNVTQKDKGLLTVLEI 1329

Query: 806  CQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            C +     I+ +   +  +    F + +  I   L+AI+GVG   A++I+EA  +  F S
Sbjct: 1330 CHEMNLRGIKFLKADLYKSNASKFLIEEEGIRIPLSAIQGVGENAAKNIVEAREEGEFIS 1389

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGAL 891
             ED   R    K  + V+E+L   G L
Sbjct: 1390 KEDLNKR---GKATKTVIENLENHGCL 1413


>gi|226949776|ref|YP_002804867.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum A2 str. Kyoto]
 gi|226841257|gb|ACO83923.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum A2 str. Kyoto]
          Length = 1432

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 188/902 (20%), Positives = 325/902 (36%), Gaps = 201/902 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +++L   A G + L +LVS+  L    K+  R+  S + E   EGLI+ +   +G I + 
Sbjct: 609  LIILAKNAVGLKNLYKLVSKSNLEYFFKRP-RMAKSLINEY-KEGLIIGSACEAGQIYKE 666

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVN---LQRHRGYDRYRE-----SQVVQLAYTHELP 210
                 ++   K ++ F      +   N   L R+      +E      ++ +L   +  P
Sbjct: 667  ILKGKTKEELKNMIDFYDYLEIQPLGNNEFLVRNGSVKDEKELEEINKKICELGEFYNKP 726

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
            +VAT +  FL EE      +LM+       S  D     P  Y +   EM+  F  L E 
Sbjct: 727  VVATCDVHFLDEEHEVFRRILMS---GQGFSDADN---QPPLYFRTTEEMLKEFEYLGEE 780

Query: 270  -----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
                  + NT +IA     I  +     P  IE   +DI++             + +  A
Sbjct: 781  KAKEVVIYNTNKIADMIDEIKPIPEETFPPKIEGAEEDIRR-------------MTIEKA 827

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              AI      +   +RL  ELN I    ++  +LI    +  + ++   VG  RGS   S
Sbjct: 828  H-AIYGDPLPEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SRGSVGSS 885

Query: 385  VTAYALTITDIDPL---------RFS--------------------------------LL 403
              A    IT+++ L         ++S                                + 
Sbjct: 886  FAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIKDGHDIP 945

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A   V +
Sbjct: 946  FETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTAYGFVKK 1005

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             L                                 +  +  +  ++RL   S+   G+ R
Sbjct: 1006 YLDE-------------------------------KNIKANNAEIERL---SKGCTGVKR 1031

Query: 524  HASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
             +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D LG   
Sbjct: 1032 TSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSIS-GRLLKLDILGHDD 1090

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLE 624
             T+L+     + Q   +VD   +P  D +   L T+               GT G+ +  
Sbjct: 1091 PTVLR-----MLQDLTQVDPKSVPLGDPKVISLFTSPKALGVTEEDIDCPVGTYGLPEFG 1145

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +  +RQ L   +P    +++ +  L       ++ + N +   KE   +I   I      
Sbjct: 1146 TKFVRQMLLDTKPKSFAELVRISGLSHGT---DVWLNNAQYFIKEGYTTIKDCIST---- 1198

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK-QKERFISGASKNGISK 743
               +++Y  Q     +L    + +  + +R+  GK + EE +   KE  +         K
Sbjct: 1199 RDDIMVYLLQ----KELPPKSAFTIMEKVRK--GKGLTEEQEALMKEHDVPDWYIESCKK 1252

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---- 799
                           Y F K HA AY +++ + A+ K +YP  + A   ++  D+     
Sbjct: 1253 I-------------KYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADL 1299

Query: 800  -----EKIKKFCQDARQFNIQIMPPS-------------------------VNTPCVDFK 829
                 EKIK+   +       I                               +    F 
Sbjct: 1300 IVKGEEKIKEKMNELYAMGNNITQKDKGLLTILEISYEMYKRGIKFLKVDLYKSNATKFL 1359

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +  + I   L+A++GVG   A+ I EA  +  F S ED   R    K+ + V+E+L   G
Sbjct: 1360 IEGDSIRPPLSALQGVGKNAAKSIEEARLEGEFISKEDLRLRT---KVTKTVIETLENHG 1416

Query: 890  AL 891
             L
Sbjct: 1417 CL 1418


>gi|224501737|ref|ZP_03670044.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-561]
          Length = 1444

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 166/785 (21%), Positives = 285/785 (36%), Gaps = 180/785 (22%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +   TA G + L +L++ M  ++   +  RI  S L+++  EGLI+ T  S G +  A 
Sbjct: 622  TIYAQTAVGLKNLFKLIT-MSNINYFYRVPRIPRSQLKKL-REGLIIGTACSQGELFEAM 679

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 Q AEK    +       K ++   +   L R           +V++      P+V
Sbjct: 680  MQKGMQAAEKVAEFYDFIEVQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVV 739

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE 272
            AT N  +    D     +L+   HS   +        PD + +   EM+  F+ L E   
Sbjct: 740  ATGNVHYKDPVDKIYRKILI---HSQGGANPLNRAELPDVHFRTTDEMLKEFAFLGE--- 793

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE--VRLAQGAIAK 330
                   +   I+  +A ++  ++E       K  ++EL    + G E  VR    A+A 
Sbjct: 794  ------EKAKEIVVTNANLVVDWMEN-----LKPIKDELYTPKIDGAEDEVRNMSYAMAH 842

Query: 331  GYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
              + +   +    RL+ EL  I    F+  +LI    ++ +  +   VG  RGS   S  
Sbjct: 843  QLYGEKLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRGSVGSSFV 901

Query: 387  AYALTITDIDPLRFSLL-----------------------------------------FE 405
            A    IT+++PL    L                                         FE
Sbjct: 902  ATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPDKDCPHCGTAYQKEGQDIPFE 961

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA---LRDVG 462
             FL      +PD D++F  D +     Y +  +G + V +  T G++  K A   +R+  
Sbjct: 962  TFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFRAGTIGTVAEKTAFGYVRNYE 1021

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            R + M                                   +    +DRL+       G+ 
Sbjct: 1022 RDMNM----------------------------------TIRGAEIDRLV---AGCTGVK 1044

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLI 569
            R    H  GI++        +P Y DV    PV             T F+   I    ++
Sbjct: 1045 RTTGQHPGGIIV--------IPDYMDVYDFTPVQFPADATDSEWKTTHFDFHSIHD-NVL 1095

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTK 615
            K D LG    T ++   D        +D   IP DD +   L               +  
Sbjct: 1096 KLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPDVMKLFGSTESLGVKPADIDSKT 1150

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
            GTLGI +  +  +RQ LE  +P    +++ +  L       ++ + N  +  K K   + 
Sbjct: 1151 GTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG---TDVWLGNAEELIKNKTCEL- 1206

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            P +     +    +IYQ        L S  +    + +R+  GK + +EM++        
Sbjct: 1207 PDVIGCRDDIMVFLIYQ-------GLESSLAFKIMESVRK--GKGLTDEMEEAM------ 1251

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                 ++  + +   E   K   Y F K+HAAAY +++ + A+ K HYP+ F A   T+ 
Sbjct: 1252 -----MANKVPLWYIESCKKIK-YMFPKAHAAAYVLMAVRIAYFKVHYPLYFYATYFTVR 1305

Query: 796  MDNVE 800
             D+ +
Sbjct: 1306 ADDFD 1310


>gi|327197959|ref|YP_004306276.1| putative DNA polymerase III alpha subunit [Lactococcus phage 949]
 gi|306009279|gb|ADM73674.1| putative DNA polymerase III alpha subunit [Lactococcus phage 949]
          Length = 1429

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 96/501 (19%), Positives = 208/501 (41%), Gaps = 40/501 (7%)

Query: 406  RFLNPDRM----SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            RF++  R+    S+PD  +DF     +  ++  +   G +   Q+I +G++Q K A +  
Sbjct: 770  RFMSESRILEAKSLPD--VDFNTANPEPFMKAQKEILGEDNAYQMIAYGTMQEKDAFKTY 827

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             R L +P ++   + +           L+      ++R+          +++ SQ+  G+
Sbjct: 828  CRGLDIPKNEYWTIAE----------DLERWVKTDKWRD----------IIKASQQFIGV 867

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
                S H    ++   P+S+ + + +  +  + V        +    +K D L +    +
Sbjct: 868  VTSFSPHPCSSLLLSDPISRKIGVIK-TKEGVDVALIGSYDSDVYKYLKNDLLVVTVWDI 926

Query: 582  LQKSLDFLAQR--GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            + K    L      V+    L+  +D + + L        + Q  +   +  +   +P  
Sbjct: 927  IAKVCKELNIEIPDVRTLTKLVENND-KVWDLYKDGMVATLNQAGTPSGKPQVMQYKPQS 985

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            + ++   V+  RP        + NR+     I    P  D +LK++   +++QE +M   
Sbjct: 986  VRELSMWVAGIRPSFASMKSYFLNRQPFSYNI----PAFDELLKDSDNFVLFQESIMATL 1041

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q  +GY       L +A+ KK K  ++   ++FI G      S+  A+ ++ ++    +Y
Sbjct: 1042 QF-AGYEEDVTYGLLKAIAKKKKGIIEPIHDKFIEGFVAKTGSEEQALKVWTIIENAVNY 1100

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFN SHA + A+ S   AW+K  YP+ + A  + +  ++ +K  +   +   F+I +   
Sbjct: 1101 GFNSSHAYSVALDSLYGAWLKATYPLVYFAVVLNVYKNSKDKQAELINELEYFDISLKGL 1160

Query: 820  SVNTPCVD--FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF---DSLEDFCSRVDS 874
                   D  ++   N IY  ++ +  +    A ++   + ++ +   D ++ F   +D 
Sbjct: 1161 QFGKSKSDYSYETETNTIYKGISTVAYLNQQVADNLYNLAKERHYEKDDVIQLFLDILDG 1220

Query: 875  KKLNRRVLESLVFAGALDCFG 895
               + R +  L+  G    FG
Sbjct: 1221 ALADNRQMNILIKLGFFKEFG 1241


>gi|317471587|ref|ZP_07930931.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
 gi|316900902|gb|EFV22872.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
          Length = 1478

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 171/857 (19%), Positives = 310/857 (36%), Gaps = 179/857 (20%)

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRGYDRY 195
            EGLI+ +   +G +  A     S+    +++ F           ++  +   RH     +
Sbjct: 685  EGLIIGSACEAGELYSAIVDQRSEEEIAKIVEFYDYLEIQPEGNNQFMIESARHENVCSF 744

Query: 196  RE-----SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQKDRPRVT 249
             +      ++V+L  T   P+ AT +  FL  +D     +LMA        SQ       
Sbjct: 745  EDIRNFNRKIVELGETFRKPVAATCDVHFLDPDDSIYRAILMAGKGFKDADSQ------- 797

Query: 250  PDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P  Y +   EM+  F  L   +A E  +    + S  ++  +PI P     +C  + +  
Sbjct: 798  PPLYFRTTEEMLHEFEYLGSDKAREVVITNPNKISDQIENISPIHP----DKCPPVIENS 853

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            + +LR+       +   +     G +  D    RLD ELN I    ++  ++I    +  
Sbjct: 854  DRDLRD-------ICYKKAHDIYGPNLPDIVTTRLDKELNSIIGNGYAVMYIIAQKLVWD 906

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------------- 398
            +  +   VG  RGS   S  A    IT+++PL                            
Sbjct: 907  SLDHGYLVG-SRGSVGSSFAATMSGITEVNPLPAHYICPECYYVDFDSPEVKKYARMGMS 965

Query: 399  -------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL       PD D++F  + + +   YV+  +G
Sbjct: 966  GCDMPDAVCPKCGAKLNKEGHDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHAYVEVIFG 1025

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
              +  +  T G+L  K A   V + L+                                R
Sbjct: 1026 KGKAYRAGTIGTLAEKTAYGYVLKYLEE-------------------------------R 1054

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLP 554
            E       ++RL   ++   G+ R    H  GI++   D+ +     + R   DVRS + 
Sbjct: 1055 EISKRKCEIERL---AKGCTGVKRTTGQHPGGIIVVPHDKEIYDFTAVQRPANDVRSPII 1111

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT 614
             T +    I+ + L+K D LG    +++++  D        V+   IP DD     L   
Sbjct: 1112 TTHYEYHSID-SNLLKLDILGHDDPSMIRRLEDLTG-----VNAQNIPLDDKSVMSLFHG 1165

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-S 673
               LGI   +  G +    G+     + +I ++    P    ++V  +   +G +  + +
Sbjct: 1166 TEVLGITPEQIGGTKLGSLGIPEFGTDFVIQMLLDTNPQSFSDLVRISGLSHGTDVWLGN 1225

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQ--IAQLLS-GYSLSEADVLRRAMGKKIKEEMDKQKE 730
               LI+         I  ++ +M   I Q L    S +  + +R+  G K ++E +  +E
Sbjct: 1226 AQKLIEEGDATISTSICTRDDIMVYLINQGLDEALSFTIMESVRKGKGLKPEQE-EAMRE 1284

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            + +                +    K   Y F K+HA AY +++++ AW K  +P+ + AA
Sbjct: 1285 KDVP-------------EWYIWSCKQIKYMFPKAHAVAYVMMAWRIAWFKVFHPLAYYAA 1331

Query: 791  SMTL----------------------EMDNVEKIK------------KFCQDARQFNIQI 816
              ++                      E+ N  K +            K   +      + 
Sbjct: 1332 YFSIRAKAFSYEDMCMGKEKLNNRMKEIQNTPKFEVKNADLDLLREMKIADEMYARGFEF 1391

Query: 817  MPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            MP  +      DF++ D +I    +AI G+G   A+   EAS  +PF S+E+F  R  + 
Sbjct: 1392 MPLDIYRAKAKDFQIIDGKIMPPYSAIDGMGEKAAKEAAEASKGEPFTSMENFRDRTKAP 1451

Query: 876  KLNRRVLESLVFAGALD 892
            K     ++ L   G L+
Sbjct: 1452 KSVVDKMKELGLMGDLE 1468


>gi|321309654|ref|YP_004191983.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str. Langford
            1]
 gi|319801498|emb|CBY92144.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            haemofelis str. Langford 1]
          Length = 1393

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 132/661 (19%), Positives = 240/661 (36%), Gaps = 189/661 (28%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             +R  FEL+ I    +S  + +    +Q +  N   VG  RGS   S+ A+ L I++++P
Sbjct: 796  EKRFSFELSSIKNNNYSVIYWVSYLLVQESINNGYLVG-SRGSVGSSLIAFLLNISEVNP 854

Query: 398  L----------------RFS------------------------LLFERFLNPDRMSMPD 417
            L                 F+                        + FE F+      +PD
Sbjct: 855  LPPHYRCAKCSVFELHEEFTESGFDLPDKECPHCGAILGKDGHHIPFETFMGYGGSKVPD 914

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  + ++    ++++  GH+RV +  T  ++  K A   V                
Sbjct: 915  IDLNFSGEYQNRAHNFLRDLLGHDRVYRAGTISTMAEKTAFAIV---------------- 958

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--G 535
                                + E    +  + +L  I++++  + R +  H  GI++   
Sbjct: 959  ------------------KTYEEETQQELGLGKLNWIAKQIIDVKRTSGQHPGGILVIPN 1000

Query: 536  DRPLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            D+ +    P+     D  SD   T    + +  A L+KFD LG    T L    +   Q 
Sbjct: 1001 DKTIYDFSPINYPANDTSSDWLTTHLEFEDLHDA-LLKFDILGHDDPTTLALLKEITGQ- 1058

Query: 593  GVKVDLSLIPFDDHETYHLLTTK-----------------GTLGIFQLESSGMRQALEGM 635
                D   +P DD E  +L  ++                 G +G+ +  +   R+ +   
Sbjct: 1059 ----DPRNVPTDDREVLNLFKSRKGIGIEDSSDFVGEDETGAIGLPEFGTLLTRKIIRTC 1114

Query: 636  QPDCIEDIIALVSLYRPGP------IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             P+   D+I  +S +  G       ID ++     K+ + K+  +    D +        
Sbjct: 1115 DPNSFADLIR-ISGFSHGTGVWKQNIDKLI-----KSKQYKLNQVITCRDDITLHLCSAG 1168

Query: 690  IYQEQVMQIAQ-LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I  E+   I++ +  G  +SEA +       K+ ++ +K  + +I  A K          
Sbjct: 1169 IQMEEAFAISESIRKGKGVSEAQL-------KLMQD-NKVPQWYIDSAKK---------- 1210

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD----------N 798
                      Y F K+HA AY ++S++ AW K ++ + F A   TL  D          +
Sbjct: 1211 --------MTYIFPKAHATAYVLMSWKIAWYKRYHTLAFFAVFFTLRRDDFDYSLLVKND 1262

Query: 799  VEKIKKFCQD------ARQFNIQIMPPS-------VNTPCVDF-KVG------------- 831
            +E +K    D      +  F ++    +       V    ++F K G             
Sbjct: 1263 IEAVKDKYHDIFKKMKSNNFEVKSTLKTKDKSAFYVYEAALEFLKCGFRFKNISINESDF 1322

Query: 832  ------DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884
                     +      I G+G   A+H++E  + + PF SL DF  R    KLNR V++ 
Sbjct: 1323 SKFIPQGQELLIPFIVIDGLGAIKAKHLVEKRNEEGPFQSLNDFAKRT---KLNRTVIQK 1379

Query: 885  L 885
            L
Sbjct: 1380 L 1380



 Score = 39.3 bits (90), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 35/68 (51%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           S V L +H+ +S  +G     + + K  A    A+ +TD  ++ S  E  + +   GI+P
Sbjct: 262 SIVPLSIHTKFSAFDGLYVFKDFVSKAKALGHKALGVTDFTSVQSFAEIERVSRKEGIKP 321

Query: 70  IIGCQLDI 77
           I G +L+I
Sbjct: 322 IYGAELEI 329


>gi|301633239|gb|ADK86793.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            pneumoniae FH]
          Length = 1443

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 148/757 (19%), Positives = 288/757 (38%), Gaps = 187/757 (24%)

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEAL------ENTVEIARRCSF--ILQVHAPILPR 294
            K+R +  P+ +++   EM++  S L E L      +NT ++A++ +   ++ V   + P 
Sbjct: 759  KEREQRVPNVFVRTTGEMLNEMSFLGEQLAYELVVKNTNKLAKQLTADDLVPVQTKLQPP 818

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
             IE   +++  +  ++   KA+ G  +             +   QR+  EL  I    F 
Sbjct: 819  VIEGSNENLAAKTWSQA--KAIYGDPL------------PKLIEQRIQEELKAIIDNGFG 864

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------- 398
              + I    ++ + ++   VGP RGS   S+ A  + I++I+PL                
Sbjct: 865  IIYWISHLLVKQSVQDGYFVGP-RGSIGSSLVANLIGISEINPLVPHYLCESCQYFEVNE 923

Query: 399  -------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
                                       ++ F  F+      +PD D++F  + + +   Y
Sbjct: 924  EVDDGYDLMVRDCPKCGAKAAFKGDGHNIPFATFMGFAGDKIPDIDLNFSSEYQAKAHAY 983

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            V+  +G +   +  T  ++  K A           Y       ++I              
Sbjct: 984  VRELFGEQYTFRAGTIATVAEKTA-----------YGYARNYFEII-------------- 1018

Query: 494  DDSRFREARLAD-PSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPM---YR 547
                 ++  LA  P ++R     QKL G+ R    H  GI+I    + + +  P      
Sbjct: 1019 -----KQTELATAPEIERF---KQKLVGIKRTTGQHPGGIMIFPNHKSVYEFTPCGYPAD 1070

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP-FDDH 606
            D  SD   T F    +    ++K D LG    T+L+   D        V+   IP FD  
Sbjct: 1071 DTSSDWKTTHFEYDALGDT-ILKLDILGQDDPTMLKHLADL-----THVNPQNIPRFDKK 1124

Query: 607  ET-------------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             T             ++L    G +GI +  +  +R+ LE  +P    D+I +  L    
Sbjct: 1125 LTEMFWSVNPLKLKPHYLDEPTGAIGIPEFGTKFVRKILEQTKPKGFGDLIRVSGLSHG- 1183

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               N+   N +K  K++ +S+  +I         +++Y   + +  Q    + + E   +
Sbjct: 1184 --KNVWADNAQKILKDQNLSLKDVIAC----RDDIMLYL--IHKGMQAKDAFEIMEK--V 1233

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+ +    KE    Q     +G  ++ I+  + ++          Y F K+HAAAY +++
Sbjct: 1234 RKGIALNAKEVQLMQS----NGVEQHWINSCLKIS----------YLFPKAHAAAYVLMA 1279

Query: 774  YQTAWMKTHYPVEFLAASMTL----------------------EMDNVEKIKKF------ 805
            ++ AW K ++P+ + A  ++                       E++ + +IK+       
Sbjct: 1280 WRIAWFKLYHPLSYYACLLSFKLKEHDVSGFKSGVSFVKQKLEELNTLYRIKRIKPKEAE 1339

Query: 806  CQDARQFNIQIMPPSV--------NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
               + +  +++M   +        ++    F   +  +      I G+G   A  I+EA 
Sbjct: 1340 LLTSYEVYLEMMARGIKLEQISLTHSHATRFVEHNGMLIAPFITIPGMGEAVANSIIEAR 1399

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             +KPF SL+DF  R    K+ ++ +E+      LD F
Sbjct: 1400 NEKPFSSLDDFKKRT---KITKKHIEAFTQMQLLDEF 1433


>gi|168187912|ref|ZP_02622547.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum C str. Eklund]
 gi|169294244|gb|EDS76377.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum C str. Eklund]
          Length = 1441

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 134/626 (21%), Positives = 233/626 (37%), Gaps = 139/626 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +++L     G + L +L+S    LD   +  R+  S +++   EGLI+ +   +G + +A
Sbjct: 619  LIILAKNQVGLKNLYKLIS-FSNLDYFYKKPRMPKSLIEQY-KEGLIIGSACEAGEVYKA 676

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
                  +   K L+ F      + +  +   +     +  D+ +E   ++ +L   ++LP
Sbjct: 677  VLEGKIEDELKELIKFYNYLEIQPIMNNEFMLRKGIVKNEDQLKEINRKIYELGVNNDLP 736

Query: 211  LVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            +VAT +  FL  +D +  ++LM     S   +Q       P  YLK  SEM+  F  L E
Sbjct: 737  VVATGDVHFLDFKDVKFREILMTGQGFSDAANQ-------PPLYLKTTSEMLKEFEYLGE 789

Query: 270  ALENTV------EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
             +   V      +IA    F+  +     P  I+   +DI+    N    KA       +
Sbjct: 790  DIAKEVVIYNPQKIANEVEFVKPIPDETFPPKIDGAEEDIR----NMTLEKAYT-----I 840

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                + K  H      RL+ ELN I    ++  +LI    +  + ++   VG  RGS   
Sbjct: 841  YGNPLPKVVH-----DRLEKELNSIINNGYAVLYLIAHKLVAKSLEDGYLVG-SRGSVGS 894

Query: 384  SVTAYALTITDIDPL-----------------------------------------RFSL 402
            S+ A    IT+++ L                                            +
Sbjct: 895  SLVATMSDITEVNGLPPHYVCPNCKNSEFFTDGSVSSGADLPPKKCPKCGTEYNRNGHDI 954

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL  +    PD D++F  D + ++ +Y +  +G     +  T G++  K A   V 
Sbjct: 955  PFETFLGFNGDKEPDIDLNFSGDNQGDIHKYTEVLFGKGHTFKAGTIGTIADKTAYGFVK 1014

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            + L                D  + V  QA                ++RL   +Q   G+ 
Sbjct: 1015 KYL----------------DEKNMVVSQA---------------EIERL---TQGCTGVK 1040

Query: 523  RHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R +  H  GI++   D  +    P+     D  S++  T F+   I    L+K D LG  
Sbjct: 1041 RTSGQHPGGIMVVPSDNEIYNFCPIQHPADDSNSEIITTHFDYHSIS-GRLLKLDILGHD 1099

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE------------- 624
              T+L+   D      +K     IP  D +   L T+   LG+ + E             
Sbjct: 1100 DPTVLRMLKDITGLDPIK-----IPIGDEKVLSLFTSPEALGVTEEELECPVGCYGIPEF 1154

Query: 625  -SSGMRQALEGMQPDCIEDIIALVSL 649
             +  +RQ L   QP    D++ +  L
Sbjct: 1155 GTKFVRQMLVDTQPKTFSDLVRISGL 1180


>gi|224540943|ref|ZP_03681482.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM
            15897]
 gi|224526094|gb|EEF95199.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM
            15897]
          Length = 1444

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 191/950 (20%), Positives = 352/950 (37%), Gaps = 219/950 (23%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ---RLIELVSRMYLLDQGKQSVRICL 133
            ID  +++++    K  FP    + +L  T EG +   RL+ + +  Y      Q  RI  
Sbjct: 577  IDEVNDIEIEESYKHAFPY--HMCVLAKTPEGLKNMFRLVSIANTKYF----HQCDRIPR 630

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG--------DRLY-V 184
            S L E   EGL+      SG ++   F  +S   E+ L    K +         D +Y V
Sbjct: 631  SEL-EFYREGLLF----GSGCVNSKVFEIASTRDEEELREEIKFYDYIEIQPLEDAMYLV 685

Query: 185  NLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            +  ++   D       +++++A   +  + AT +  FL + D    +V +  +   +  +
Sbjct: 686  DRGKYESIDDIERIYKRIIKIAKEEKKLICATGDVHFLDKRDKVYREVFITNSKIQINGK 745

Query: 243  ------KDRPR-VTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILP 293
                  ++ PR +TPD YL+   EM+  F  L   E  E  V    + + ++        
Sbjct: 746  PHPLLVRNNPRALTPDVYLRTTDEMLECFPYLSDEETYEYVVTNTNKVADMIG------- 798

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA-------QDYRQRLDFELN 346
                   DDI   +E  L   ++  ++V+L +    K  HA       +    RL+ EL+
Sbjct: 799  -------DDIIVTKEG-LYPPSIENVDVKLRE-LCHKNAHATYGEVLPEIVSARLEKELS 849

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I +  F+  + I ++ ++ + +    VG  RGS   S  A    I++++PL        
Sbjct: 850  NIIKHGFAVIYFIASELVRVSNEAGYLVG-SRGSVGSSFVATMAGISEVNPLAPHYICPH 908

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                               ++ FE FL  +   +PD D++F  +
Sbjct: 909  CKHNEFLDEGVISDGYDLPDKNCPVCGHKMKGEGHNIPFETFLGFNADKVPDIDLNFSGE 968

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             + +   Y +  +G + V +  T  ++  K A    G A                   A+
Sbjct: 969  YQPKAHAYTKTIFGEDHVFRAGTISTVAEKTAY---GYA------------------KAY 1007

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLV 543
              +L  + D+ R  E          L  ++    G+ R    H  GI++   D  +    
Sbjct: 1008 AENL-GLEDNIRSAE----------LQRLANGCTGVKRTTGQHPGGIIVIPNDMEVFDFT 1056

Query: 544  PMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P      DV ++   T F+   I    ++KFD LG    T+++     + Q    VD   
Sbjct: 1057 PYQYPADDVNAEWRTTHFDFHKIHD-NVLKFDILGHVDPTVIR-----MLQDMTGVDPKS 1110

Query: 601  IPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            IP +D +   L  +               G LG+ +  +  +R  LE   P C  +++ +
Sbjct: 1111 IPTNDQKVMSLFNSSKALGCDLSFLNCKTGALGLPEFGTKFVRGMLEQTHPTCFNELVII 1170

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
              L          VY         + +   LI       Q VI  ++ +M +  +  G  
Sbjct: 1171 SGLSH-----GTDVY---------LGNAETLIKSGTCTLQEVIGCRDDIM-VYLIEKGLP 1215

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
              +A  +   + K    ++  QK  ++    K+ + +    +  ++      Y F K+HA
Sbjct: 1216 NKDAFDIMECVRKGKSPKVFPQK-GYVELMKKHNVPQWYIDSCLKI-----KYMFPKAHA 1269

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMD--NVEKI---KKFCQDARQ---------- 811
             AY + + + AW K +YP E+ A   T   D  ++E +   K+   D  Q          
Sbjct: 1270 VAYVLSAIRVAWWKLYYPREYYAVYFTTRCDFYDIETLIAGKEAVFDKYQECLKLKAEHK 1329

Query: 812  -------------FNIQIMPPSVNTPCVDFKVGDNR-----------IYYSLAAIKGVGT 847
                           +++    +    +  +  D+R           I     +I G+G 
Sbjct: 1330 ASNKEEGLITVFEVALEMFERGLKFSKISLEQSDSRKFICNPDDPTAIIPPFTSIDGLGD 1389

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
                 ++EA  ++PF S+ED   R    +L+   +E+L   G L+ F  S
Sbjct: 1390 AVGDSVVEARKERPFTSIEDIKKRT---RLSGTHIETLQKMGVLNGFSES 1436


>gi|68271948|gb|AAY89240.1| putative DNA polymerase III alpha subunit [uncultured bacterium
            BAC-L1N9]
          Length = 437

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 149/369 (40%), Gaps = 36/369 (9%)

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            + +    +G  LS  D LR+A+ KK   +++      F +GA+  G    +AV ++E++ 
Sbjct: 2    LNVCAAFAGMPLSTGDGLRKALSKKRPTKQLAAYAGEFFAGAAALGRDPEVAVKVWEMVL 61

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y F K H+ +Y  ++    +++ HYP EF+AA +        +   +  +A +  +
Sbjct: 62   SFAGYSFCKGHSCSYIRVAQHACYLRAHYPAEFIAAVLA-NGGGFYRPFAYVAEAMRMGL 120

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-------------- 860
             + PP VN         D  +      IKG+   T   I  A  ++              
Sbjct: 121  AVRPPDVNASAFRTTGHDGEVRIGFQFIKGLSDDTVERIACARGEQGTGNGERDNAPVAR 180

Query: 861  --------PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF--GYSRMQLLQSLDNIQ- 909
                    PF S +D   R + +  + R+   L+  GA D    G +R  +L ++D    
Sbjct: 181  SPFPVPGSPFVSFDDLRIRTNLRPDDLRL---LIRVGACDAIAGGMTRPMMLWAVDAASP 237

Query: 910  --KYAQWVEKNRTNKHENI---FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
                + +VE+  T    +     A E+GT  +   + +    ++  R   E  +LGF   
Sbjct: 238  PGPLSTFVERGSTALFASFPLSLARERGTGGEGTGVPRLREYDTDRRRRAEYELLGFTTD 297

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+ ++   L +  +     ++    G  +  A M+ + +   T     + + TF +  
Sbjct: 298  IHPMRLFTEELSRFRVV-KSTALPQHVGRTVLCAGMLTTAKPVHTITEEPMEFATFDDGD 356

Query: 1025 KEYEANFFP 1033
               E   FP
Sbjct: 357  GLIETVLFP 365


>gi|237742507|ref|ZP_04572988.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
 gi|229430155|gb|EEO40367.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
          Length = 1449

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 184/916 (20%), Positives = 339/916 (37%), Gaps = 205/916 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
            ++ +I++LV T  G + +  LVS  ++   G +  RI  S L E   EGLI+   GSS  
Sbjct: 608  SLKNIMVLVKTQAGLKNMYRLVSEAHIKYFGNKKARIPKSVLVE-NREGLII---GSSLT 663

Query: 155  IDRAFFFNSSQVAE-------------KRLLTFKKLFGDRLYVNLQRHRG---YDRYRES 198
               A F N+ ++A+              +   + +L     Y  L    G      Y E 
Sbjct: 664  ---AHFMNTGELADLYLRHDLEKLEEAAKFYDYIELLPKSTYNELIEKDGTGALGSYEEV 720

Query: 199  QVVQLAYTHELP------LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
            + +   Y ++L       + A++N  +L E +     +L+    S  V    +  +    
Sbjct: 721  EKMN-RYFYDLGKKLGILVTASSNVHYLDENEDIIRSILLY--GSGTVYNLRQYSINNGF 777

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            Y +   EM+  FS L E +   V +         + + I P  I +     + E   E+ 
Sbjct: 778  YFRTTDEMLQEFSYLGEDVAKEVVVTNTNKIADMIESGIRP--IPEGFYPPKMENAEEIV 835

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                     R+    +     A     RL+ ELN I    FS  +L     ++ +  N  
Sbjct: 836  RTMTYEKAHRIYGDPLPDIVSA-----RLERELNAIINNGFSVLYLSAQKLVKKSLDNGY 890

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLR--------------------------------- 399
             VG  RGS   S+ A+ + IT+++ L                                  
Sbjct: 891  LVG-SRGSVGSSLVAFMMGITEVNALYPHYICDNPECKHSEFIEREGVGIDLPDKICPKC 949

Query: 400  --------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                    +S+ FE F+      +PD D++F  + + E+ RY +  +G E V +  T  +
Sbjct: 950  GKKLRKDGYSIPFEVFMGFKGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTIST 1009

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            L  K A   V +  +                            D+     R     + RL
Sbjct: 1010 LAEKNAEAYVRKYFE----------------------------DNNLNAVRAEIIRLGRL 1041

Query: 512  LEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKA 566
             + ++K  G       H  G+VI      + +  P+ R   D  S+   T ++   +++ 
Sbjct: 1042 CQGAKKTTG------QHPGGMVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDEQ 1095

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK----------- 615
             L+K D LG    T ++     L Q    +++  IP  D +T  + ++            
Sbjct: 1096 -LVKLDILGHDDPTTIK-----LLQEYTNMEIKDIPLADKDTLKIFSSTESLGVTPEQIG 1149

Query: 616  ---GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR---KNGKE 669
               GT GI +  +  +RQ L   +P    +++ +  L       N+ + N +   +NG+ 
Sbjct: 1150 TEIGTYGIPEFGTGFVRQMLIDTRPTTFAELVRISGLSHG---TNVWLNNAQEFVRNGQA 1206

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +  I  + D ++       +      +I + +           R+   KK  E      
Sbjct: 1207 TLSQIITVRDDIMNYLIDQGLDNSDAFKIMEFV-----------RKGKPKKEPENW---- 1251

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E++ S   +  +      + +    +  +Y F K HA AY +++ + A+ K H P+ F A
Sbjct: 1252 EKYSSMMKEKKVP-----DWYIESCRRIEYMFPKGHAVAYVMMAMRIAYFKVHQPLAFYA 1306

Query: 790  ASMTLEMDN---------------VEKIKK-------------FCQ-----DARQFNIQI 816
            A ++ + D+               +E++ K              C+     +AR   I++
Sbjct: 1307 AFLSRKADDFDMEFMSRGILAKQKLEELSKEPKLDPKKKNEQAICEIVIEMEAR--GIEL 1364

Query: 817  MPPSVN-TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            +P  +  +    F + DN+I   L  I G+G      I++   +  F S+ED   R    
Sbjct: 1365 LPVDIYLSDGKKFTIEDNKIRIPLIGINGLGGAVIDAIVKEREEGNFISVEDLKRRT--- 1421

Query: 876  KLNRRVLESLVFAGAL 891
            K+ + V++ L   GA+
Sbjct: 1422 KIQQPVVDKLKNIGAI 1437


>gi|259046785|ref|ZP_05737186.1| Gram-positive family DNA polymerase III, alpha chain [Granulicatella
            adiacens ATCC 49175]
 gi|259036553|gb|EEW37808.1| Gram-positive family DNA polymerase III, alpha chain [Granulicatella
            adiacens ATCC 49175]
          Length = 1444

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 157/803 (19%), Positives = 290/803 (36%), Gaps = 229/803 (28%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT N  +L+ ED    ++L+   ++ V      P+  PD +L+   EM+  F+ L E
Sbjct: 736  PVVATGNVHYLNPEDKIYREILLTSVNNGV------PQEYPDAHLRTTDEMLKEFAFLGE 789

Query: 270  --ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
              A E  V  +   S  L+   P+                +++L    + G E  + + +
Sbjct: 790  EKAYEVVVTNSNWVSEQLEEITPV----------------KDDLYTPKIEGAEDEITKLS 833

Query: 328  IAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
              K +        +    R+  EL  I    FS  +LI    +  + ++   VG  RGS 
Sbjct: 834  YDKAHEWYGNPLPKIVDDRIKKELKSIIGNGFSVIYLIAQKLVLKSNQDGYLVG-SRGSV 892

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S+ A    IT+++PL                                           
Sbjct: 893  GSSLVATLTGITEVNPLAPHYRCPQCQLSEFFDDGSVGSGFDLPEKNCPRCNTRMVKDGH 952

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL-- 458
             + FE FL      +PD D++F  + + +   Y +  +G + V +  T  ++  K A   
Sbjct: 953  DIPFETFLGFYGDKVPDIDLNFSGEYQPQAHNYTKVLFGEDYVYRAGTISTVADKTAFGY 1012

Query: 459  -----RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
                 RD+G                                   FR+A      ++RL  
Sbjct: 1013 VKGYERDLGL---------------------------------EFRQAE-----IERL-- 1032

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNM 560
             +    G+ R    H  GI++        +P Y DV    P+             T F+ 
Sbjct: 1033 -ANGCTGVKRSTGQHPGGIIV--------IPDYMDVYDFTPIQYPADDLSAEWRTTHFDF 1083

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-------- 612
              I    ++K D LG    T+++   D        +D   IP DD E   +         
Sbjct: 1084 HSIHD-NVLKLDILGHDDPTVIRMLQDLSG-----MDPKSIPPDDPEVMKIFGGTEVLGV 1137

Query: 613  ------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
                  +  GTLGI +  +  +R  LE  +P+   +++ +  L     +           
Sbjct: 1138 TPEQIDSNTGTLGIPEFGTKFVRGMLEQTKPNTFTELLQISGLSHGTDV--------YLG 1189

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E+++ +H +  P+ +    VI  ++ +M        Y + +   +   +  KI E + 
Sbjct: 1190 NAEELIRLHNI--PLSE----VIGCRDDIMV-------YLIHKG--VEEGVAFKIMEGVR 1234

Query: 727  KQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            K K   + F +   +N + +    +  ++      Y F K+HAAAY +++ + AW K H 
Sbjct: 1235 KGKGIPDDFQAIMRENNVPEWYIQSCLKI-----KYMFPKAHAAAYVLMALRVAWFKVHK 1289

Query: 784  PVEFLAASMTLEMDNV---------EKIKKFCQDARQFNIQIMPPSVNTPCV-------- 826
            P+ +  A  ++   +          E IKK  ++ R+  ++      N   V        
Sbjct: 1290 PLLYYCAYFSVRAQDFDIVAMSQGKEMIKKRIKEIREKGMEASAKEQNLLTVLELANEMV 1349

Query: 827  -----------------DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                             +F +  + +     AI+G+G   A  I+EA  ++PF S +D  
Sbjct: 1350 ERGFHFKMVDVDKSEASNFVIEGDSLIAPFRAIQGLGLNVANKIVEARQEQPFLSKKDLA 1409

Query: 870  SRVDSKKLNRRVLESLVFAGALD 892
            +R    K+++ +++ +     LD
Sbjct: 1410 TR---GKVSKTLIDYMTENKVLD 1429


>gi|116617801|ref|YP_818172.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc
            mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096648|gb|ABJ61799.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc
            mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 1437

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 190/923 (20%), Positives = 339/923 (36%), Gaps = 237/923 (25%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             LLV  A G + L +LVSR  + +   +  RI  S L++   EGL++ TG +SG +  + 
Sbjct: 613  TLLVQNATGLKNLYKLVSRSNI-EFFARVPRIPRSILEQY-REGLLVGTGDTSGDVIISL 670

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVV------------QLAYTH 207
                 Q AEK+   +        ++ +Q    Y    ES ++             +A   
Sbjct: 671  IEKGIQEAEKKAAYYD-------FIEIQPTANYQPMIESGLIATEEKLQSILKDMVAIGD 723

Query: 208  EL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR---VTPDHYLKNRSEMVS 262
            +L  P+V T +  + + ED    ++L+A       +Q   P+     PD   K   E++ 
Sbjct: 724  KLKKPVVVTEDVKYTNPEDKIYRNILIA-------TQPGNPQNRTALPDLNFKTTQELLD 776

Query: 263  IF----SDLPEAL--ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             +    +DL + L  +NT  +A     I  + +   P  I    D++    E   R    
Sbjct: 777  DYAFMGADLAKKLVIDNTHLVANMLEDIEPLKSGSYPPNIPGAGDELT---ERTYRT--- 830

Query: 317  AGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                        AK ++ +    + + R+D EL  I    F+ +++I    +  + K+  
Sbjct: 831  ------------AKQWYGEPIPKEIQARIDQELKAIIGNGFAPHYIIAQRLVAKSVKDGY 878

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPL----------RFSLL------------------- 403
             VG  RGS   S  A    IT+++PL           F L+                   
Sbjct: 879  LVG-SRGSVGSSFVATMSGITEVNPLPPHYRSAHGDYFELVDPKEYESGYDLPEKEDPNH 937

Query: 404  -------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
                         FE F+      +PD D++F  D +     Y++  +G   V +  T  
Sbjct: 938  PGEFLIGDGQNIPFETFMGFTGNKVPDIDLNFSGDYQPIAHNYMKVLFGEHNVYRAGTIA 997

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            ++  K A   V +A +  +                         D  +R A      ++R
Sbjct: 998  TVAEKTAFGYV-KAYEREH-------------------------DQHYRGAE-----IER 1026

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEK 565
            L   +Q + G+ R    H  GI+I  R   +    P+     D +S    T  +   I  
Sbjct: 1027 L---AQGMTGVKRTTGQHPGGILIVPREYEVYDFTPIQYPADDQKSLWQTTHMDYHSIHD 1083

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT----------- 614
              L+K D LG    T+++   D        +D   IP +D     L T+           
Sbjct: 1084 -NLLKMDILGHDDPTMVRTLKDMSG-----IDPQSIPANDPGVLSLFTSTEALGVTPEQI 1137

Query: 615  ---KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                GTLG+ +  ++ +R  L   QP    +++ +  L                +G +  
Sbjct: 1138 FSNTGTLGLPEFGTNFVRGMLTETQPHTYSELLQISGL---------------SHGTDVW 1182

Query: 672  V-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL----RRAMGKKIKEEMD 726
            V + + LI+        VI  ++++M     L  + +  AD      +   GK I EE  
Sbjct: 1183 VGNANELIENGTATIGTVIGTRDKIMTD---LINWGVPAADAFNIMEKVRKGKGITEEYQ 1239

Query: 727  KQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            KQ +E  I       + K               Y F ++HAAAY +++ + A+ K ++P 
Sbjct: 1240 KQLREEKIPEWYIQSMLKI-------------KYMFPRAHAAAYVLMALRIAYFKVYFPT 1286

Query: 786  EFLAASMTLEMD----------------NVEKIKKFCQDAR-----------------QF 812
             + A   ++  D                 ++K+K    DA                  + 
Sbjct: 1287 IYYATYFSVRADAFDIVAMSRGKDATKAAIQKLKSLGNDATVGDKNLLTVLEMANEALER 1346

Query: 813  NIQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            NI      +N +  +++ +  + +     ++ G+G   A+ I+ A  +KPF S ED   R
Sbjct: 1347 NITFAMVDLNKSEALEWVIDGDTLIPPFVSLPGLGDNVAKQIVAARTEKPFISKEDLKKR 1406

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E +     LD  
Sbjct: 1407 ---GKVSQTIIEFMTLHSVLDGL 1426


>gi|169841567|ref|ZP_02874680.1| dnaE [candidate division TM7 single-cell isolate TM7a]
          Length = 70

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 46/60 (76%)

Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
           T G+FQLES+GM++ L  ++P+  EDIIA+V+LYRPGP+  I  +  RK+G+E I+ +HP
Sbjct: 6   TTGVFQLESAGMKRYLRELKPEVFEDIIAMVALYRPGPMQFIDSFIKRKHGEEDIIYLHP 65


>gi|28378678|ref|NP_785570.1| DNA polymerase III PolC [Lactobacillus plantarum WCFS1]
 gi|254556876|ref|YP_003063293.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1]
 gi|300768189|ref|ZP_07078094.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
            ATCC 14917]
 gi|308180817|ref|YP_003924945.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
            ST-III]
 gi|32469698|sp|Q88VK2|DPO3_LACPL RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|28271514|emb|CAD64419.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Lactobacillus
            plantarum WCFS1]
 gi|254045803|gb|ACT62596.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1]
 gi|300494253|gb|EFK29416.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
            ATCC 14917]
 gi|308046308|gb|ADN98851.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
            ST-III]
          Length = 1437

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 160/804 (19%), Positives = 294/804 (36%), Gaps = 207/804 (25%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
            S +V+L +   +P+ AT +  +L+ ED     +L+       +++ +RP V    + ++ 
Sbjct: 719  SNMVELGHEMNIPVAATGDVHYLNPEDKIYRKILIHSQPGNPLNRTERPDV----HFRST 774

Query: 258  SEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
             EM+  F  L    A E  V+  R  +   ++  P+  +         + E E    ++A
Sbjct: 775  DEMLKDFDFLGTETAHEVVVDTPRALADQFEIVRPVKDKLYTPRMKGAEAEIEKLTMDRA 834

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
             A     L +            ++R+D EL  I    FS  +LI    +  + K+   VG
Sbjct: 835  HAWYGNPLPEIV----------QKRVDKELKSIIGNGFSVIYLIAQRLVFKSNKDGYLVG 884

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S+ A    IT+++P+         ++S                         
Sbjct: 885  -SRGSVGSSIVATLSGITEVNPMPPHYRCPNCQYSHFYTNNEYGSGYDLPPKDCPECGTD 943

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ- 453
                   + FE FL      +PD D++F  D +     Y +  +G + V +  T G++  
Sbjct: 944  MVRDGQNIPFETFLGFYGNKVPDIDLNFSGDYQPIAHNYTKVLFGEKNVYRAGTIGTVAD 1003

Query: 454  ------AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
                   KA  RD  + L+   ++VDRL K                              
Sbjct: 1004 KTGYGYVKAYERDTNQTLRS--AEVDRLAK------------------------------ 1031

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV------------ 555
                        G+ R    H AGI++        VP Y D+    PV            
Sbjct: 1032 ---------GTTGVKRTTGQHPAGIIV--------VPDYMDIYDFTPVQYPADDQSAAWQ 1074

Query: 556  -TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH-------- 606
             T F+   I    ++K D LG    T+++   D     GV+ + S+ P D H        
Sbjct: 1075 TTHFDFHSIHD-NILKIDILGHDDPTMIRMLQDL---SGVQPE-SIPPVDPHVMKIFSSP 1129

Query: 607  -----ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
                     + +  GTLGI +  +  +R  LE   P    +++ +  L       ++ + 
Sbjct: 1130 EVLGVTEDQIFSKTGTLGIPEFGTRFVRGMLEETHPSTFNELLQISGLSHG---TDVWLG 1186

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N  +  K+  V++             VI  ++ +M     L  Y + E+D     M  +I
Sbjct: 1187 NAEELIKDGTVTL-----------AEVIGCRDNIMTD---LIHYGM-ESD-----MSFQI 1226

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E +  +K R I    +  +      + +        Y F ++HAAAY +++ + A+ K 
Sbjct: 1227 MEHV--RKGRGIPDEWQQAMKDANVPDWYIESCLKIKYMFPRAHAAAYILMALRVAYFKV 1284

Query: 782  HYPVEFLAASMTLEMDNVEKI------------------KKFCQDARQFNIQIMPPSVN- 822
            ++P+ +  A  ++  D+ + +                  K     A++ N+  +    N 
Sbjct: 1285 YFPLIYYTAYFSVRADDFDLVAMAHGKDAVKASMKAITDKGMDASAKEKNLLTVLELANE 1344

Query: 823  ---------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
                           +   D+ +  + +     A+ G+G   A+ I+ A ADKPF S ED
Sbjct: 1345 MLERGFKFSMVDLDKSDASDWLIDGDTLIAPFRAVPGLGLNVAKQIVAARADKPFLSKED 1404

Query: 868  FCSRVDSKKLNRRVLESLVFAGAL 891
               R    K+++ +++ +   G L
Sbjct: 1405 LSKR---GKVSKSLIDFMTENGVL 1425


>gi|291542732|emb|CBL15842.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus bromii
            L2-63]
          Length = 1452

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 195/937 (20%), Positives = 324/937 (34%), Gaps = 210/937 (22%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+        PT   I+L V    G + L  L+S  +L +   +  RI  S L +   
Sbjct: 610  NTKIAGGDFKKLPTYHQIIL-VKNKTGLKNLYRLISYSHL-NYFYKKPRIPKSELVKY-R 666

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRGYDRY 195
            EGLI+ +   +G +  A          K++ +F           +   +   R    D  
Sbjct: 667  EGLIIGSACCAGQLYMAILEGKPWGELKQIASFYDYLEIQPAGNNSFMIRDGRFNSVDEL 726

Query: 196  RE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
             E    +++LA     P+ AT +  F+   D E   +LMA         KD  +  P  Y
Sbjct: 727  HEIDRTIIKLAKELGKPVCATCDVHFMDPTDSEFRKILMAGQ-----GFKDAEQQAP-LY 780

Query: 254  LKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQ 304
             +  +EM+  F  L +       +EN  +IA  C +I  +     P  IE   ++  DI 
Sbjct: 781  FRTTAEMLKEFEWLGKDKAYEYVVENPNKIADMCEYIRPIPKGTFPPNIEGAQEQLIDIT 840

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             +   E     +  +                  + RLD ELN I    FS  ++     +
Sbjct: 841  WKRAKEKYGDPLPEI-----------------VKARLDKELNSITTYGFSVLYMTAQKLV 883

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL-------------------------- 398
              ++ +   VG  RGS   S  A    I++++PL                          
Sbjct: 884  ADSEAHGYLVG-SRGSVGSSFVATMSGISEVNPLCPHYVCPNCKHSEFITDGSYGSGFDM 942

Query: 399  ---------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                              + FE FL      +PD D++F  + + +  RY +  +G   V
Sbjct: 943  PPKNCPECGTLMDQDGHEIPFETFLGFKGDKVPDIDLNFSGEYQSKSHRYTEELFGKNNV 1002

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
             +  T  ++  K AL  V +     ++Q   L                     +  E RL
Sbjct: 1003 FKAGTISTVAEKTALGFVKK-----FAQERGLVM------------------HKAEEKRL 1039

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYR---DVRSDLPVTQF 558
            A               G+ R    H  G+V+  R   +    P+     DV SD   T F
Sbjct: 1040 AIGCT-----------GVKRTTGQHPGGMVVVPRTNDVYDFCPVQHPANDVNSDNITTHF 1088

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
            +   I    + K D LG    T+      +     +KV +S     D E   L T+   L
Sbjct: 1089 DFHSIHDT-ITKLDELGHDVPTIYHYLELYTGIPVMKVSMS-----DPEVMSLFTSPKAL 1142

Query: 619  GI-----------FQLESSG---MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            G+           F L   G   +R  L   QP    D++ +  L     +         
Sbjct: 1143 GVTEEDIDSKTGTFSLPECGTSFVRGMLIEAQPKTFTDLLQIAGLSHGTDV-------WL 1195

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI--K 722
             N +E I +    I  ++     ++ Y    +    L  G +    +++R+    K+  +
Sbjct: 1196 GNAQELIHNGTCTISEVIGTRDSIMTY----LMHKGLEPGMAFKIMEIVRKGNATKLLTE 1251

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E     +E  +     +   K               Y F K+HAAAY + + +  W K H
Sbjct: 1252 EHFKAMREHNVPEWYIDSCMKI-------------KYMFPKAHAAAYMIATLRLGWYKVH 1298

Query: 783  YPVEFLAASMTLEMDNVE----------------KIKK-------FCQDARQFN------ 813
              VE+ AA  T+  +N++                 IK+         +D  +F       
Sbjct: 1299 KAVEYYAAYFTVRSENLDGAIAMQGHQAVRDKMNNIKQKQSVHEATAKDEAEFQTLQIVN 1358

Query: 814  ------IQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
                  I+ +P  +  +    FKV D +I    +++ GVG   A  + E      + S+E
Sbjct: 1359 EMMARKIEFLPVDIYKSEAKMFKVEDGKIRLPFSSLPGVGGAAADSLAETGKHTEYLSIE 1418

Query: 867  DFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLL 902
            D   +    K+ + V+E+L   G L D    S+M L 
Sbjct: 1419 DMQIKT---KVTKAVIETLKDVGVLKDLPESSQMSLF 1452


>gi|150018035|ref|YP_001310289.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
            8052]
 gi|149904500|gb|ABR35333.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
            8052]
          Length = 1446

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 137/626 (21%), Positives = 228/626 (36%), Gaps = 142/626 (22%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++L     G + L +LVS  +L D   +  RI  S  ++  +EGLI+ +  S G + +A 
Sbjct: 619  IILAKNYVGLKNLYKLVSYSHL-DYFYKKPRILKSMFKKY-SEGLIIGSACSEGELYQAI 676

Query: 160  FFNSSQVAEKRLLTFKKLF-----GDRLYVNLQRH---RGYDRYRESQVVQLAYTHELPL 211
                 +   + +  F         G+  Y+  Q     + Y +    ++V+LA     P+
Sbjct: 677  LLGKPEEQIEEIANFYDYLEIQPLGNNDYLVRQEQVPSKEYLKEINKKIVELAERLGKPV 736

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA- 270
            VAT +  FL  ED     +L A         KD     P  YL+   EM+  FS L    
Sbjct: 737  VATGDVHFLDPEDEIYRRILEAGQ-----GFKDADNQAP-LYLRTTEEMLDEFSYLGRTK 790

Query: 271  -----LENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAVAGLEVR 322
                 + NT  +A  C  I  +     P  IE   +   DI  E+ +EL    +  +   
Sbjct: 791  AYEVVVTNTNIVADMCEQISPISPEKCPPHIEGCEQTIKDIAYEKAHELYGDPLPEI--- 847

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                           + RLD EL+ I +  FS  ++I    +  + ++   VG  RGS  
Sbjct: 848  --------------VQARLDKELDSIIKNGFSVMYIIAQKLVWKSNEDGYLVG-SRGSVG 892

Query: 383  GSVTAYALTITDIDPL---------RFS-------------------------------L 402
             S  A    IT+++ L         ++S                               +
Sbjct: 893  SSFVANMTGITEVNALPPHYRCPKCKYSDFEDYGVLNGFDLPDKVCPVCGENLYKDGIDI 952

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL  +    PD D++F  + + +  RY +  +G     +  T G++  K A   V 
Sbjct: 953  PFETFLGFNGDKEPDIDLNFSGEYQAKAHRYTEVIFGKGTTFKAGTIGTIAEKTAFGYV- 1011

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                                              ++ E +    +    + IS    G+ 
Sbjct: 1012 ---------------------------------KKYYEEKNITINKAETIRISVGCTGIK 1038

Query: 523  RHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H  GI++    R + +  P+     D  SD+  T F+   I++  L+K D LG  
Sbjct: 1039 RTTGQHPGGIIVVPKGREIFEFCPVQHPADDPNSDIITTHFDYHSIDQ-NLLKLDILGHD 1097

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL-LTTK-------------GTLGIFQL 623
              T+++     + Q    VD   IP DD +T  L  +TK             GT GI + 
Sbjct: 1098 DPTVIR-----MLQDITGVDPHEIPMDDKDTMSLFFSTKALGVTPNQINSEVGTFGIPEF 1152

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSL 649
             +  +R  L   +P    D++ +  L
Sbjct: 1153 GTKFVRGMLVDTKPKTFSDLLCISGL 1178



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 34/147 (23%)

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD---------NVEKIKKFCQDA 809
            Y F K+HAAAY +++++ AW K H P  + A   T+              EK+K   Q+ 
Sbjct: 1268 YMFPKAHAAAYVMMAFRIAWFKVHIPQAYYATYFTIRAKAFDAEFMIFGKEKVKAKMQEI 1327

Query: 810  RQFNIQIMPPSVN-------------------------TPCVDFKVGDNRIYYSLAAIKG 844
            +    +  P   +                         +    F++ ++ I   L +I G
Sbjct: 1328 QALGNEAGPKDKDMYDDLEIVLEMYERGFKFLPIDLYKSSATKFQLEEDGIRPPLNSIAG 1387

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSR 871
            +G   A  I  A+ +K F+S++D   R
Sbjct: 1388 MGNVAAEGIASAAKEKEFNSVDDVKKR 1414


>gi|256849838|ref|ZP_05555269.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|256713327|gb|EEU28317.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
          Length = 1436

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 118/556 (21%), Positives = 221/556 (39%), Gaps = 99/556 (17%)

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE--SQVV 201
            + M+  G     ++A F++  +V      T+ +L  D L       +  D+  E    ++
Sbjct: 668  IAMMQKGYDEAREKAKFYDYLEVQPPA--TYSQLIADGLI------KDEDQLHEIIENII 719

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +L      P+VAT+++ ++ ++D     +L+A   S     +++P+  PD +  +  EM+
Sbjct: 720  KLGKELNKPVVATSDAHYVDQKDAIYRKILIAAQRSN--PSRNKPQ--PDLHFYSTQEML 775

Query: 262  SIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK---EEENELR 312
              FS L E       ++NT +IA   S I  +   + P  IE   ++++K   ++  EL 
Sbjct: 776  DAFSFLGEDVAKKIVIDNTNKIADELSEIQPIKDGLYPPHIEHADEEMKKLTYDKAYELY 835

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             K +  +                  + R+D ELN I    ++  +LI    +  + K+  
Sbjct: 836  GKPLPKI-----------------VKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGY 878

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFC 423
             VG  RGS   S+ A    IT+++PL         ++S  FE         +PD D   C
Sbjct: 879  LVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFENGEYGSGFDLPDKDCPKC 937

Query: 424  -----QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
                 +D +D         +G ++V  I    S   +    +  R +             
Sbjct: 938  GTPLVKDGQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM------------F 984

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEISQKLEGLYRHASTHAAGI 532
             P++     ++  +AD + +  A+  D   D       L  ++  + G+ R    H AGI
Sbjct: 985  GPDNSYRAGTIATVADKTAYGYAKHYDEEHDLKLRNAELDRLAAGVRGVKRTTGQHPAGI 1044

Query: 533  VI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            V+   D  +    P+     DV +   +T ++   I    ++KFD LG    T+++   D
Sbjct: 1045 VVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDPTMIRHLQD 1103

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALE 633
                    +D   IP DD     L ++               GTLG+ +  +  +R  LE
Sbjct: 1104 LSG-----IDPLTIPPDDPGVMSLFSSPDILGVTPEQIQSETGTLGVPEFGTRFVRGMLE 1158

Query: 634  GMQPDCIEDIIALVSL 649
              +P    +++ +  L
Sbjct: 1159 ETKPTTFSELLQISGL 1174


>gi|312621985|ref|YP_004023598.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kronotskyensis
            2002]
 gi|312202452|gb|ADQ45779.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
            kronotskyensis 2002]
          Length = 1402

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 134/648 (20%), Positives = 226/648 (34%), Gaps = 173/648 (26%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            R RL+ ELN I +  F+  +LI    +  +  +   VG  RGS   S+ A    IT+++P
Sbjct: 812  RARLEKELNSIIKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVGSSLVATMCGITEVNP 870

Query: 398  L---------RFS--------------------------------LLFERFLNPDRMSMP 416
            L         ++S                                + FE FL  D    P
Sbjct: 871  LPPHYICPNCKYSEFITDGSVGCGYDLEDKNCPRCGEKLKKDGHDIPFETFLGFDGDKEP 930

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D++F  D +    ++ +  +G   V +  T  ++  K A           Y++   L 
Sbjct: 931  DIDLNFSGDYQPIAHKFTEELFGQGYVFRAGTISTVAEKTA-----HGFVTKYAEEKGL- 984

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI-- 534
                    HP                        +L +SQ   G+ R    H  G++I  
Sbjct: 985  ------NLHPA----------------------EVLRLSQGCTGVKRTTGQHPGGLMIVP 1016

Query: 535  GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             D+ +    P+     S    +  T F+   I    L+K D LG    T+++     + Q
Sbjct: 1017 RDKEIFDFTPIQHPADSTDKSVITTHFDYHAI-SGRLLKLDILGHDDPTVIR-----MLQ 1070

Query: 592  RGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQP 637
                VD   IP DD  T  + T+               GT GI +  +  +RQ L   +P
Sbjct: 1071 DLTGVDPRSIPLDDKATMSIFTSTEALGISPEDIDCEVGTFGIPEFGTRFVRQMLIETKP 1130

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQE 693
                +++ +  L       N+   N +   +  I ++  +I    D ML   Q  +  ++
Sbjct: 1131 KTFAELVRISGLSHGT---NVWTNNAQDLVRNGIATLKEVISTRDDIMLYLIQKGVPPKD 1187

Query: 694  QVMQIAQLLSGYSLS-EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
                +  +  G  L  E + L RA             + +I    K              
Sbjct: 1188 SFRIMEDVRKGKGLKPEDEQLLRAHN---------VPDWYIESCKK-------------- 1224

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------ 800
                  Y F K+HAAAY +++++ A+ K HY   F A   T+  D+ +            
Sbjct: 1225 ----ITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYFTVRADDFDYATILKGRDAIR 1280

Query: 801  --------KIKKFCQDARQF-------------NIQIMPPSVN-TPCVDFKVGDNRIYYS 838
                    +I    Q  +                ++  P  +N +    F + D  +   
Sbjct: 1281 QKIRDLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAEKFIIKDGGLLIP 1340

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
              A+  VG   A+ I+EA  +  F S++D   R    KLN++V+E L 
Sbjct: 1341 FNALPNVGVAAAKSIVEARKEGRFLSVDDLIRRA---KLNKQVIEILT 1385


>gi|227878821|ref|ZP_03996728.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|227861569|gb|EEJ69181.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
          Length = 1436

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 118/556 (21%), Positives = 221/556 (39%), Gaps = 99/556 (17%)

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE--SQVV 201
            + M+  G     ++A F++  +V      T+ +L  D L       +  D+  E    ++
Sbjct: 668  IAMMQKGYDEAREKAKFYDYLEVQPPA--TYSQLIADGLI------KDEDQLHEIIENII 719

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +L      P+VAT+++ ++ ++D     +L+A   S     +++P+  PD +  +  EM+
Sbjct: 720  KLGKELNKPVVATSDAHYVDQKDAIYRKILIAAQRSN--PSRNKPQ--PDLHFYSTQEML 775

Query: 262  SIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK---EEENELR 312
              FS L E       ++NT +IA   S I  +   + P  IE   ++++K   ++  EL 
Sbjct: 776  DAFSFLGEDVAKKIVIDNTNKIADELSEIQPIKDGLYPPHIEHADEEMKKLTYDKAYELY 835

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             K +  +                  + R+D ELN I    ++  +LI    +  + K+  
Sbjct: 836  GKPLPKI-----------------VKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGY 878

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFC 423
             VG  RGS   S+ A    IT+++PL         ++S  FE         +PD D   C
Sbjct: 879  LVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFENGEYGSGFDLPDKDCPKC 937

Query: 424  -----QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
                 +D +D         +G ++V  I    S   +    +  R +             
Sbjct: 938  GTPLVKDGQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM------------F 984

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEISQKLEGLYRHASTHAAGI 532
             P++     ++  +AD + +  A+  D   D       L  ++  + G+ R    H AGI
Sbjct: 985  GPDNSYRAGTIATVADKTAYGYAKHYDEEHDLKLRNAELDRLAAGVRGVKRTTGQHPAGI 1044

Query: 533  VI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            V+   D  +    P+     DV +   +T ++   I    ++KFD LG    T+++   D
Sbjct: 1045 VVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDPTMIRHLQD 1103

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALE 633
                    +D   IP DD     L ++               GTLG+ +  +  +R  LE
Sbjct: 1104 LSG-----IDPLTIPPDDPGVMSLFSSPDILGVTPEQIQSETGTLGVPEFGTRFVRGMLE 1158

Query: 634  GMQPDCIEDIIALVSL 649
              +P    +++ +  L
Sbjct: 1159 ETKPTTFSELLQISGL 1174


>gi|295693139|ref|YP_003601749.1| DNA polymerase iii, alpha subunit [Lactobacillus crispatus ST1]
 gi|295031245|emb|CBL50724.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus ST1]
          Length = 1436

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 118/556 (21%), Positives = 221/556 (39%), Gaps = 99/556 (17%)

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE--SQVV 201
            + M+  G     ++A F++  +V      T+ +L  D L       +  D+  E    ++
Sbjct: 668  IAMMQKGYDEAREKAKFYDYLEVQPPA--TYSQLIADGLI------KDEDQLHEIIENII 719

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +L      P+VAT+++ ++ ++D     +L+A   S     +++P+  PD +  +  EM+
Sbjct: 720  KLGKELNKPVVATSDAHYVDQKDAIYRKILIAAQRSN--PSRNKPQ--PDLHFYSTQEML 775

Query: 262  SIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK---EEENELR 312
              FS L E       ++NT +IA   S I  +   + P  IE   ++++K   ++  EL 
Sbjct: 776  DAFSFLGEDVAKEIVIDNTNKIADELSEIQPIKDGLYPPHIEHADEEMKKLTYDKAYELY 835

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             K +  +                  + R+D ELN I    ++  +LI    +  + K+  
Sbjct: 836  GKPLPKI-----------------VKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGY 878

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFC 423
             VG  RGS   S+ A    IT+++PL         ++S  FE         +PD D   C
Sbjct: 879  LVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFENGEYGSGFDLPDKDCPKC 937

Query: 424  -----QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
                 +D +D         +G ++V  I    S   +    +  R +             
Sbjct: 938  GTPLVKDGQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM------------F 984

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEISQKLEGLYRHASTHAAGI 532
             P++     ++  +AD + +  A+  D   D       L  ++  + G+ R    H AGI
Sbjct: 985  GPDNSYRAGTIATVADKTAYGYAKHYDEEHDLKLRNAELDRLAAGVRGVKRTTGQHPAGI 1044

Query: 533  VI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            V+   D  +    P+     DV +   +T ++   I    ++KFD LG    T+++   D
Sbjct: 1045 VVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDPTMIRHLQD 1103

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALE 633
                    +D   IP DD     L ++               GTLG+ +  +  +R  LE
Sbjct: 1104 LSG-----IDPLTIPPDDPGVMSLFSSPDILGVTPEQIQSETGTLGVPEFGTRFVRGMLE 1158

Query: 634  GMQPDCIEDIIALVSL 649
              +P    +++ +  L
Sbjct: 1159 ETKPTTFSELLQISGL 1174


>gi|256843343|ref|ZP_05548831.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN]
 gi|293381212|ref|ZP_06627220.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            crispatus 214-1]
 gi|256614763|gb|EEU19964.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN]
 gi|290922252|gb|EFD99246.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            crispatus 214-1]
          Length = 1436

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 118/556 (21%), Positives = 221/556 (39%), Gaps = 99/556 (17%)

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE--SQVV 201
            + M+  G     ++A F++  +V      T+ +L  D L       +  D+  E    ++
Sbjct: 668  IAMMQKGYDEAREKAKFYDYLEVQPPA--TYSQLIADGLI------KDEDQLHEIIENII 719

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +L      P+VAT+++ ++ ++D     +L+A   S     +++P+  PD +  +  EM+
Sbjct: 720  KLGKELNKPVVATSDAHYVDQKDAIYRKILIAAQRSN--PSRNKPQ--PDLHFYSTQEML 775

Query: 262  SIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK---EEENELR 312
              FS L E       ++NT +IA   S I  +   + P  IE   ++++K   ++  EL 
Sbjct: 776  DAFSFLGEDVAKKIVIDNTNKIADELSEIQPIKDGLYPPHIEHADEEMKKLTYDKAYELY 835

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             K +  +                  + R+D ELN I    ++  +LI    +  + K+  
Sbjct: 836  GKPLPKI-----------------VKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGY 878

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFC 423
             VG  RGS   S+ A    IT+++PL         ++S  FE         +PD D   C
Sbjct: 879  LVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFENGEYGSGFDLPDKDCPKC 937

Query: 424  -----QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
                 +D +D         +G ++V  I    S   +    +  R +             
Sbjct: 938  GTPLVKDGQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM------------F 984

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEISQKLEGLYRHASTHAAGI 532
             P++     ++  +AD + +  A+  D   D       L  ++  + G+ R    H AGI
Sbjct: 985  GPDNSYRAGTIATVADKTAYGYAKHYDEEHDLKLRNAELDRLAAGVRGVKRTTGQHPAGI 1044

Query: 533  VI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            V+   D  +    P+     DV +   +T ++   I    ++KFD LG    T+++   D
Sbjct: 1045 VVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDPTMIRHLQD 1103

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALE 633
                    +D   IP DD     L ++               GTLG+ +  +  +R  LE
Sbjct: 1104 LSG-----IDPLTIPPDDPGVMSLFSSPDILGVTPEQIQSETGTLGVPEFGTRFVRGMLE 1158

Query: 634  GMQPDCIEDIIALVSL 649
              +P    +++ +  L
Sbjct: 1159 ETKPTTFSELLQISGL 1174


>gi|262046916|ref|ZP_06019876.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US]
 gi|260572898|gb|EEX29458.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US]
          Length = 1436

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 118/556 (21%), Positives = 221/556 (39%), Gaps = 99/556 (17%)

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE--SQVV 201
            + M+  G     ++A F++  +V      T+ +L  D L       +  D+  E    ++
Sbjct: 668  IAMMQKGYDEAREKAKFYDYLEVQPPA--TYSQLIADGLI------KDEDQLHEIIENII 719

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +L      P+VAT+++ ++ ++D     +L+A   S     +++P+  PD +  +  EM+
Sbjct: 720  KLGKELNKPVVATSDAHYVDQKDAIYRKILIAAQRSN--PSRNKPQ--PDLHFYSTQEML 775

Query: 262  SIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK---EEENELR 312
              FS L E       ++NT +IA   S I  +   + P  IE   ++++K   ++  EL 
Sbjct: 776  DAFSFLGEDVAKKIVIDNTNKIADELSEIQPIKDGLYPPHIEHADEEMKKLTYDKAYELY 835

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             K +  +                  + R+D ELN I    ++  +LI    +  + K+  
Sbjct: 836  GKPLPKI-----------------VKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGY 878

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFC 423
             VG  RGS   S+ A    IT+++PL         ++S  FE         +PD D   C
Sbjct: 879  LVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFENGEYGSGFDLPDKDCPKC 937

Query: 424  -----QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
                 +D +D         +G ++V  I    S   +    +  R +             
Sbjct: 938  GTPLVKDGQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM------------F 984

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEISQKLEGLYRHASTHAAGI 532
             P++     ++  +AD + +  A+  D   D       L  ++  + G+ R    H AGI
Sbjct: 985  GPDNSYRAGTIATVADKTAYGYAKHYDEEHDLKLRNAELDRLAAGVRGVKRTTGQHPAGI 1044

Query: 533  VI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            V+   D  +    P+     DV +   +T ++   I    ++KFD LG    T+++   D
Sbjct: 1045 VVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDPTMIRHLQD 1103

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALE 633
                    +D   IP DD     L ++               GTLG+ +  +  +R  LE
Sbjct: 1104 LSG-----IDPLTIPPDDPGVMSLFSSPDILGVTPEQIQSETGTLGVPEFGTRFVRGMLE 1158

Query: 634  GMQPDCIEDIIALVSL 649
              +P    +++ +  L
Sbjct: 1159 ETKPTTFSELLQISGL 1174


>gi|50365104|ref|YP_053529.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
 gi|50363660|gb|AAT75645.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
          Length = 1493

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 160/842 (19%), Positives = 300/842 (35%), Gaps = 216/842 (25%)

Query: 171  LLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            L  +K L  D     L+ H   D  +  ++++LA  + + LVAT+++ +   E  +  DV
Sbjct: 723  LSVYKNLINDN---QLEEHELIDVIK--KIIRLAKKYNVMLVATSDAHYTRPELKKIRDV 777

Query: 231  LMAV-----AHSTVVSQKDRPRVT--PDHYLKNRSEMVSIFSDLPE-------ALENTVE 276
             +       +   + S +++ ++   PD YL+  +EM+  F+ L E        + NT +
Sbjct: 778  YINAKGLGGSRHPLFSFRNKNKLIDYPDQYLRTTNEMLKEFAWLSEPALVQEMVITNTNK 837

Query: 277  IARRC-SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
            IA    S I+ +   +    IE   D + K++  E  +     +   + +          
Sbjct: 838  IAEMIDSNIIVIKDGLFTPNIEN-VDTLLKDKCYETAHAMYGDVLPEIVES--------- 887

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
                RL+ EL  I +  F+  + I    ++ +  +   VG  RGS   S  A A  IT++
Sbjct: 888  ----RLEKELTSIIKHGFAVVYWISHLLVERSNNDGYLVG-SRGSVGSSFVATASKITEV 942

Query: 396  DPLR-----------------------------------------FSLLFERFLNPDRMS 414
            +PL+                                           + FE FL  D   
Sbjct: 943  NPLKAHYRCLNCKYSDFNTPIEIKCGYDLPEQNCPKCNEKLIGDGHDIPFETFLGFDGDK 1002

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            +PD D++F  + +     + +  +G   V +  T  ++  K A   V             
Sbjct: 1003 VPDIDLNFSGEYQPIAHNFTKEMFGENNVFRAGTISTVAEKTAFGYVK------------ 1050

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK---LEGLYRHASTHAAG 531
                                 + + E  + +  + R +EI ++   +EG+ R    H  G
Sbjct: 1051 ---------------------AFYEETGVLEEDMPRKIEIERQAKLVEGVKRTTGQHPGG 1089

Query: 532  IVI--GDRPLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            I+I   +  +    P+     D  S    T F+   I    L+K D LG    T L+   
Sbjct: 1090 IIILPKEFEIEDFSPVNFPADDASSSWKTTHFDFHSIHD-NLLKMDILGHVDPTALRMLG 1148

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLLT---------------TKGTLGIFQLESSGMRQA 631
            D      +      IP +D + Y L +               T G +G+ +  +  +R  
Sbjct: 1149 DLTGVNPIN-----IPTNDPKVYSLFSNLSALNIKPEQINGETTGAIGLPEFGTGFVRSM 1203

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR---KNGKEKIVSIHPLIDPMLKETQGV 688
            L   +P    D++ +  L       ++ + N R   KN    I ++    D ++    G 
Sbjct: 1204 LRETKPKTFADLVQISGLSHGT---DVWLGNARDLIKNNTANISTVIGCRDDIMVYLMG- 1259

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK--ERFISGASKNGISKTIA 746
                    Q     + + + E+    + + K+ KE M      E +I    K        
Sbjct: 1260 --------QGIDATTSFKIMESVRKGQGLRKEWKEIMLAHNVPEWYIESCLK-------- 1303

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT------------- 793
                        Y F K+HA AY +++Y+ AW K +YP E+ A  +T             
Sbjct: 1304 ----------IKYMFPKAHATAYVLMAYRIAWYKIYYPAEYYATFLTNRADAFDLKTFLG 1353

Query: 794  -----------LEMDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVDFK-------- 829
                       LE+   +K K   ++       +  +++    +    ++F+        
Sbjct: 1354 GYNGVKEKLAELELRKNKKDKMTTKELALMPVLEIGLEMFSRGIKMANLNFEKSLADKYI 1413

Query: 830  ------VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                   G+  +Y     I  +G   A  I++A +++P  S++D  SR    +   ++ E
Sbjct: 1414 IEKDESTGEATLYPPFLVIDSLGDAVADSIIKARSERPLTSVKDLTSRTTITQTQMKIFE 1473

Query: 884  SL 885
             L
Sbjct: 1474 QL 1475


>gi|222529790|ref|YP_002573672.1| DNA polymerase III subunit alpha [Caldicellulosiruptor bescii DSM
            6725]
 gi|222456637|gb|ACM60899.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor bescii DSM
            6725]
          Length = 1402

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 134/648 (20%), Positives = 226/648 (34%), Gaps = 173/648 (26%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            R RL+ ELN I +  F+  +LI    +  +  +   VG  RGS   S+ A    IT+++P
Sbjct: 812  RARLEKELNSIIKNGFAVMYLIAQKLVFKSLSDGYLVG-SRGSVGSSLVATMCGITEVNP 870

Query: 398  L---------RFS--------------------------------LLFERFLNPDRMSMP 416
            L         ++S                                + FE FL  D    P
Sbjct: 871  LPPHYICPNCKYSEFITDGSVGCGYDLEDKNCPRCGEKLKKDGHDIPFETFLGFDGDKEP 930

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D++F  D +    ++ +  +G   V +  T  ++  K A           Y++   L 
Sbjct: 931  DIDLNFSGDYQPIAHKFTEELFGQGYVFRAGTISTVAEKTA-----HGFVTKYAEEKGLS 985

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI-- 534
                    HP                        +L +SQ   G+ R    H  G++I  
Sbjct: 986  -------LHPA----------------------EILRLSQGCTGVKRTTGQHPGGLMIVP 1016

Query: 535  GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             D+ +    P+     S    +  T F+   I    L+K D LG    T+++     + Q
Sbjct: 1017 RDKEIFDFTPIQHPADSTDKSVITTHFDYHAI-SGRLLKLDILGHDDPTVIR-----MLQ 1070

Query: 592  RGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQP 637
                VD   IP DD  T  + T+               GT GI +  +  +RQ L   +P
Sbjct: 1071 DLTGVDPRSIPLDDKATMSIFTSTEALGISPEDIDCEVGTFGIPEFGTRFVRQMLIETKP 1130

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQE 693
                +++ +  L       N+   N +   +  I ++  +I    D ML   Q  +  ++
Sbjct: 1131 KTFAELVRISGLSHGT---NVWTNNAQDLVRNGIATLKEVISTRDDIMLYLIQKGVPPKD 1187

Query: 694  QVMQIAQLLSGYSLS-EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
                +  +  G  L  E + L RA             + +I    K              
Sbjct: 1188 SFRIMEDVRKGKGLKPEDEQLLRAHN---------VPDWYIESCKK-------------- 1224

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------ 800
                  Y F K+HAAAY +++++ A+ K HY   F A   T+  D+ +            
Sbjct: 1225 ----ITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYFTVRADDFDYATILKGRDAIR 1280

Query: 801  --------KIKKFCQDARQF-------------NIQIMPPSVN-TPCVDFKVGDNRIYYS 838
                    +I    Q  +                ++  P  +N +    F + D  +   
Sbjct: 1281 QKIRDLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAEKFIIKDGGLLIP 1340

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
              A+  VG   A+ I+EA  +  F S++D   R    KLN++V+E L 
Sbjct: 1341 FNALPNVGVAAAKSIVEARKEGRFLSVDDLIRRA---KLNKQVIEILT 1385


>gi|193216948|ref|YP_002000190.1| DNA polymerase III PolC [Mycoplasma arthritidis 158L3-1]
 gi|193002271|gb|ACF07486.1| DNA polymerase III subunit alpha [Mycoplasma arthritidis 158L3-1]
          Length = 1438

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 126/641 (19%), Positives = 239/641 (37%), Gaps = 141/641 (21%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            R++ EL  I +  +S  + I    ++ + ++   VG  RGS   S+ A    IT+++PL+
Sbjct: 840  RIEKELGPITKYGYSVIYWISHKLVKRSNQDGYLVG-SRGSVGSSIVANLAGITEVNPLK 898

Query: 400  FSLL-----------------------------------------FERFLNPDRMSMPDF 418
               L                                         FE FL  +   +PD 
Sbjct: 899  PHYLCEKCKHFEWSEDPHIFSGWDLPDKKCPKCATIMLKDGHDIPFETFLGFEANKVPDI 958

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +  +  YV+  +G     +  T  ++ +K A                  C+ 
Sbjct: 959  DLNFSGEYQVTIHNYVKELFGEAHTFRAGTIATIASKTAYG---------------FCRK 1003

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE-ISQKLEGLYRHASTHAAGIVI--G 535
              ++  H +                 +P     L+ ++ K EG+ R    H  GI+I   
Sbjct: 1004 Y-DEEIHSLH---------------EEPWTRTFLDFLASKTEGVKRTTGQHPGGIIIIPK 1047

Query: 536  DRPLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            +  +    P+     D+ S    T F+   I    ++K D LG    T+++   D     
Sbjct: 1048 EFDVEDFTPVNYPANDITSAWKTTHFDFTSIHD-NVLKLDLLGHDDPTVIRMLEDL---- 1102

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
              K D   IP  D +   L ++   + I   E S       G+       +  ++   +P
Sbjct: 1103 -TKTDAKKIPKFDEKVMSLFSSTEAIKINPSEISNETTGAYGLPEFGTTFVRRMLKTAKP 1161

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
               +++++ +   +G +        +    K+ Q  +  ++ +M+     +   L   ++
Sbjct: 1162 KSFNDLILMSGLSHGTDVWSGNAEELIKQGKKLQDCVCCRDDIMRDLINWNIDHLEAFEI 1221

Query: 713  LRRA-MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            + +   GK + E     +E  +        SK + +   E L K   Y F K+HA AY +
Sbjct: 1222 MEKVRKGKGLSE----YQESLLQ-------SKNVPIWYIESLKKIK-YMFPKAHATAYVI 1269

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVE-KIKKFCQDA--------------------- 809
            ++++ AW K +YP++F A+  +   D ++ K+    +DA                     
Sbjct: 1270 MAWRIAWYKFYYPLQFYASFYSTRPDAIDIKVMSDGKDAVDNKLLELKKRSDSKKEPLST 1329

Query: 810  RQFN-IQIMPPSVNTPCVDFKVGDNRIYYSLAA-----------------IKGVGTTTAR 851
            ++ N I I+  +       FK+ +  I  S AA                 ++G+G T A 
Sbjct: 1330 KETNLIPILEITQELYARGFKITNVHISKSKAARWIVDIENKALIPPFVVVEGLGETVAD 1389

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I++A  +  F S+EDF  R    K+N ++   L   G LD
Sbjct: 1390 SIIQARNEHEFLSVEDFEKRT---KVNSKIASQLKLLGILD 1427


>gi|289434601|ref|YP_003464473.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            seeligeri serovar 1/2b str. SLCC3954]
 gi|289170845|emb|CBH27387.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            seeligeri serovar 1/2b str. SLCC3954]
          Length = 1444

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 193/938 (20%), Positives = 338/938 (36%), Gaps = 221/938 (23%)

Query: 76   DIDMQDNLK-MTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            DID  D+L     +G       P    +   TA G + L +L++ M  ++   +  RI  
Sbjct: 596  DIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT-MSNINYFYRVPRIPR 654

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLFGDRLYVNL 186
            S L+++  EGLI+ T  S G +  A      Q AEK    +       K ++   +   L
Sbjct: 655  SQLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVADFYDFIEIQPKPVYAPLIEREL 713

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R           +V++      P+VAT N  +    D     +L+   HS   +     
Sbjct: 714  VRDEKALEEILKNIVRVGEKAGKPVVATGNVHYKDPVDKIYRKILI---HSQGGANPLNR 770

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               PD + ++  EM+  F+ L E          +   ++  ++ ++  +IE       K 
Sbjct: 771  AELPDVHFRSTDEMLKEFAFLGE---------EKAKEVVVTNSNLVVDWIED-----LKP 816

Query: 307  EENELRNKAVAGLE--VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             ++EL    + G E  VR    ++A   + +   +    RL+ EL  I    F+  +LI 
Sbjct: 817  IKDELYTPKIDGAEDEVRNMSYSMAHQLYGETLPEIVEARLEKELKSIIGHGFAVIYLIS 876

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL----------------- 403
               ++ +  +   VG  RGS   S  A    IT+++PL    L                 
Sbjct: 877  HKLVKKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKHSEFFDDGSIGS 935

Query: 404  ------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                    FE FL      +PD D++F  D +     Y +  +G
Sbjct: 936  GFDLPDKDCPHCETAYQKDGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFG 995

Query: 440  HERVAQIITFGSLQAKAA---LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             + V +  T G++  K A   +R+  R + M                             
Sbjct: 996  EDYVFRAGTIGTVAEKTAFGYVRNYEREMNM----------------------------- 1026

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV- 555
                  +    +DRL+       G+ R    H  GI++        +P Y DV    PV 
Sbjct: 1027 -----TIRGAEIDRLV---AGCTGVKRTTGQHPGGIIV--------IPDYMDVYDFTPVQ 1070

Query: 556  ------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
                        T F+   I    ++K D LG    T ++   D        +D   IP 
Sbjct: 1071 FPADATDSEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDLSG-----IDPKTIPT 1124

Query: 604  DDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            DD +   L               +  GTLGI +  +  +RQ LE  +P    +++ +  L
Sbjct: 1125 DDPDVMKLFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGL 1184

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
                   ++ + N  +  K K   + P +     +    +IYQ        L S  +   
Sbjct: 1185 SHG---TDVWLGNAEELIKNKTCEL-PEVIGCRDDIMVFLIYQ-------GLESSLAFKI 1233

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             + +R+  GK + EEM++             ++  + +   E   K   Y F K+HAAAY
Sbjct: 1234 MESVRK--GKGLTEEMEEAM-----------MANKVPLWYIESCKKIK-YMFPKAHAAAY 1279

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQD------------ 808
             +++ + A+ K H+P+ F A   T+  D+          E +K   ++            
Sbjct: 1280 VLMAVRIAYFKVHHPLFFYATYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKE 1339

Query: 809  --------------ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
                          AR F+ Q +     +   +F +  + +     AI  +GT  A+ I+
Sbjct: 1340 KNLLTVLEIANEMLARGFHFQKV-DLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIV 1398

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             A  +  F S ED   R    K+++ +++ +   G L+
Sbjct: 1399 AARENGEFLSKEDLQQR---GKVSKTIIQYMDDQGCLE 1433


>gi|315282169|ref|ZP_07870636.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            marthii FSL S4-120]
 gi|313614186|gb|EFR87863.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            marthii FSL S4-120]
          Length = 1367

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 172/811 (21%), Positives = 292/811 (36%), Gaps = 182/811 (22%)

Query: 76   DIDMQDNLK-MTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            DID  D+L     +G       P    +   TA G + L +L++ M  ++   +  RI  
Sbjct: 595  DIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT-MSNINYFYRVPRIPR 653

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTF-----KKLFGDRLYVNL 186
            S L+++  EGLI+ T  S G +  A      Q AEK      F     K ++   +   L
Sbjct: 654  SQLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIEREL 712

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R           +V++      P+VAT N  +    D     +L+   HS   +     
Sbjct: 713  VRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILI---HSQGGANPLNR 769

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               PD + +   EM+  F+ L E     + +               P  +    +D+ K 
Sbjct: 770  AELPDVHFRTTDEMLKEFAFLGEEKAKEIVVTN-------------PNVVVDWMEDL-KP 815

Query: 307  EENELRNKAVAGLE--VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             ++EL    + G E  VR    A+A   + ++  +    RL+ EL  I    F+  +LI 
Sbjct: 816  IKDELYTPKIDGAEDEVRDMSYAMAHQLYGENLPEIVEARLEKELKSIIGHGFAVIYLIS 875

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL----------------- 403
               ++ +  +   VG  RGS   S  A    IT+++PL    L                 
Sbjct: 876  HKLVKKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDGSIGS 934

Query: 404  ------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                    FE FL      +PD D++F  D +     Y +  +G
Sbjct: 935  GFDLPDKDCPHCGTAYRKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFG 994

Query: 440  HERVAQIITFGSLQAKAA---LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             + V +  T G++  K A   +R+  R + M                             
Sbjct: 995  EDYVFRAGTIGTVAEKTAFGYVRNYERDMNM----------------------------- 1025

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV- 555
                  +    +DRL+       G+ R    H  GI++        +P Y DV    PV 
Sbjct: 1026 -----TIRGAEIDRLV---AGCTGVKRTTGQHPGGIIV--------IPDYMDVYDFTPVQ 1069

Query: 556  ------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
                        T F+   I    ++K D LG    T ++   D        +D   IP 
Sbjct: 1070 FPADATDSEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDLSG-----IDPKTIPT 1123

Query: 604  DDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            DD +   L               +  GTLGI +  +  +RQ LE  +P    +++ +  L
Sbjct: 1124 DDPDVMKLFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGL 1183

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
                   ++ + N  +  K K   + P +     +    +IYQ        L S  +   
Sbjct: 1184 SHG---TDVWLGNAEELIKNKTCEL-PDVIGCRDDIMVFLIYQ-------GLESSLAFKI 1232

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             + +R+  GK + +EM++             ++  + +   E   K   Y F K+HAAAY
Sbjct: 1233 MESVRK--GKGLTDEMEEAM-----------MANKVPLWYIESCKKIK-YMFPKAHAAAY 1278

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             +++ + A+ K H+P+ F A   T+  D+ +
Sbjct: 1279 VLMAVRIAYFKVHHPLFFYATYFTVRADDFD 1309


>gi|162447117|ref|YP_001620249.1| DNA polymerase III subunit alpha [Acholeplasma laidlawii PG-8A]
 gi|161985224|gb|ABX80873.1| DNA polymerase III alpha subunit [Acholeplasma laidlawii PG-8A]
          Length = 1504

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 120/544 (22%), Positives = 205/544 (37%), Gaps = 108/544 (19%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  D + +   YV+   G E   +    G++Q  A     G 
Sbjct: 996  FETFLGFDGDKIPDIDLNFSGDYQSKAHDYVRELLGEEYTFRA---GTIQTVAERNAFGY 1052

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
                                     L+ +  D+R          ++RL   ++ +EG+ R
Sbjct: 1053 VKGY---------------------LEYLGKDAR-------SAYIERL---AKGIEGVKR 1081

Query: 524  HASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                H  GIV+   D+ +  + P+     DV S    T F+    E   L+K D LG   
Sbjct: 1082 STGQHPGGIVVVPKDKSIYDVTPIQYPADDVNSAWKTTHFDYHAFED-NLLKLDILGHDD 1140

Query: 579  LTLLQKSLDFLAQRGVKV---DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
             T+++  +D++ +        +   IP DD   Y L      +G+               
Sbjct: 1141 PTMIKFLMDYVKEHPEDFPFDNAQDIPLDDPNVYRLFQDTSVIGLKD------------- 1187

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL---IDPMLKETQGVIIYQ 692
            + D   DI +        P    ++   R +    +V I  L    D  LK +Q +++  
Sbjct: 1188 KDDVYGDIASYAIPEFGTPFTRQMLQQTRPSTFAGLVKISGLSHGTDVWLKNSQELVLGS 1247

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
             Q  +I+           D++     + +KE    +   F+     +   K  A    E+
Sbjct: 1248 TQFGKIS--FDDIIGCRDDIMVELSDRGMKEAKAFEIMEFVRKGKPSSNPKKWAEYENEM 1305

Query: 753  LA-KFAD----------YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA-----SMTLEM 796
             A K  D          Y F K+HA AY +++ + AW K + P+ F ++     ++  E 
Sbjct: 1306 KASKIPDWYIWSASQIKYMFPKAHATAYVIMAMRIAWFKVYSPLLFYSSFFSKRAVQFEH 1365

Query: 797  D-----------------NVEKIKKFCQDA----------RQFNIQIMPPSVN-TPCVDF 828
            D                 N   I    QD            +   + +P ++  +   +F
Sbjct: 1366 DIMVAGTNAIRNRINTLRNDNNITAKDQDVIVTLLVALEMTKRGFKFLPVNIKKSHAKEF 1425

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             +  N +    ++I G+G   A +I+E   +KP++S ED  +RV   KLN+ V E L  A
Sbjct: 1426 VMEKNGLRMPFSSIDGLGLQAAINIVENREEKPYNSKED--ARVRG-KLNKTVFERLDLA 1482

Query: 889  GALD 892
            GA D
Sbjct: 1483 GAFD 1486


>gi|330833568|ref|YP_004402393.1| DNA polymerase III PolC [Streptococcus suis ST3]
 gi|329307791|gb|AEB82207.1| DNA polymerase III PolC [Streptococcus suis ST3]
          Length = 1463

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 139/667 (20%), Positives = 247/667 (37%), Gaps = 143/667 (21%)

Query: 199  QVVQLAYTHELPLVATNNSLFLS-EEDYEAHDVLMAVAHSTVVS------QKDRPRVTPD 251
            Q++++     LP++AT N  ++  EE+     ++ A+     ++      +  +P   P 
Sbjct: 723  QLIEVGRRAGLPVLATGNVHYIDPEEEIYREIIVRALGQGAPINWTIGNGENAQPAPLPK 782

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             + +  SEM+  F+ L E+L   + I    +        +L RF     +D+Q  +  +L
Sbjct: 783  AHFRTTSEMLDEFAFLGESLAREIVITNPNA--------MLDRF-----EDVQVVK-TDL 828

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                +   E  +A+    K +             R++ EL  I    F+  +L     +Q
Sbjct: 829  YTPYIEKAEETVAELTYQKAFEIYGNPLPDIIDLRIEKELTSILGNGFAVIYLASQMLVQ 888

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------RFSLL 403
             + +    VG  RGS   S  A  + IT+++P+                       F L 
Sbjct: 889  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSYGSGFDLP 947

Query: 404  -------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                               FE FL  D   +PD D++F  D +      V++ +G E   
Sbjct: 948  DKDCEKCGTKYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEENAF 1007

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V R  +  Y +  R                              
Sbjct: 1008 RAGTVGTVAAKTAYGFV-RGYERDYGKFYR------------------------------ 1036

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV--------- 555
            D  V+RL   +    G+ R    H  GI++         P Y DV    PV         
Sbjct: 1037 DVEVERL---AAGAAGVKRTTGQHPGGIIV--------FPDYMDVYDFTPVQYPADDVTA 1085

Query: 556  ----TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
                T FN   I++  ++K D LG    T+++K  D        +D   IP DD     L
Sbjct: 1086 NWQTTHFNFHDIDE-NVLKLDVLGHDDPTMVRKLQDLSG-----IDPQTIPADDKGVMAL 1139

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
             +    LG+   E  G    + G+       +  +V   +P     ++  +   +G +  
Sbjct: 1140 FSGTEILGV-TPEQIGTPTGMLGIPEFGTNFVRGMVEETKPTTFAELLQLSGLSHGTDVW 1198

Query: 672  V-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            + +   LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   
Sbjct: 1199 LGNAQDLIKAGIADLSTVIGCRDDIMVYLMHAGLPPKMAFNIMERVRKGLWLKISEE--- 1255

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  +I     N +         E   K   Y F K+HAAAY +++ + A+ K HYP+ +
Sbjct: 1256 ERNGYIQAMKDNKVPDWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHYPIYY 1310

Query: 788  LAASMTL 794
              A  ++
Sbjct: 1311 YCAYFSI 1317


>gi|319651828|ref|ZP_08005953.1| hypothetical protein HMPREF1013_02565 [Bacillus sp. 2_A_57_CT2]
 gi|317396480|gb|EFV77193.1| hypothetical protein HMPREF1013_02565 [Bacillus sp. 2_A_57_CT2]
          Length = 226

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 105/216 (48%), Gaps = 17/216 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SF+HL V+S+YSLL     +  ++     ++ PA+A+TD N ++ A+ F ++     I+P
Sbjct: 2   SFIHLHVYSAYSLLSSTARIEQLVSGARENRFPALALTDRNVMYGAVAFYKECLKQSIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I+G  +D+     L   ++G+  +P    +VLL    +G+Q L+++ S +    Q K   
Sbjct: 62  ILGLSVDV-----LSEISEGEA-YP----MVLLAKDRQGFQNLLKITSTV----QTKSPE 107

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
            I + WL+     GL  LT G  G I+          A++    F  LF     +  +Q 
Sbjct: 108 GIPVKWLKHYAG-GLFALTPGLDGEIEHYLEAGEYGQAKRIAELFSSLFEPHSFFFTIQD 166

Query: 189 HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEE 223
           H   +  +  + +VQL+    + L A+N   ++ ++
Sbjct: 167 HGLREEKKNHELLVQLSGETGIGLAASNGVCYIKKK 202


>gi|223984468|ref|ZP_03634601.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
            12042]
 gi|223963539|gb|EEF67918.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
            12042]
          Length = 1451

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 143/693 (20%), Positives = 249/693 (35%), Gaps = 187/693 (26%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM------AVAHSTVVSQKDRPR--VTP 250
            ++++ A     P+VAT +  +  +E+    D+ +       V H   +  K+R    VTP
Sbjct: 712  RIIRTAKKLNKPVVATGDVHYCKKEEKILRDIYIQTQGIGGVRHPLYIYDKERRSRTVTP 771

Query: 251  DHYLKNRSEMVSIF---SDLPEALENTVE----IARRCSFILQVHAPILPRFIEKECDDI 303
            D +    ++M+  F    D   A E  VE    IA +   +L VH  +    IE      
Sbjct: 772  DQHFLTTNQMLQAFDWVEDRQLAYELVVEAPNAIADQVEKVLPVHDKLYTPVIEG----- 826

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                 +E + K +         G +      +   +RL+ ELN I    F+  + I    
Sbjct: 827  -----SEEKLKTICYENAHKTYGEVL----PEIVEKRLERELNSIIGNGFAVIYYISHLL 877

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------------------- 398
            ++ + ++   VG  RGS   S  A    IT+++PL                         
Sbjct: 878  VKKSNEDGYLVG-SRGSVGSSFVATMSGITEVNPLIPHYVCPDCQHSEFITDGSVKSGFD 936

Query: 399  ----------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                               + FE FL  +   +PD D++F  + +D+   + +  +G + 
Sbjct: 937  LPAKKCPKCGAEMIVNGHDIAFETFLGFEGDKVPDIDLNFSGEYQDKAHAFTKTVFGEDH 996

Query: 443  VAQIITFGSLQAKAALRDV-GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
            V +  T G++  K A   V G A +M                     L+ +    R R  
Sbjct: 997  VFRAGTIGTVAQKTAFGYVSGYAEEM--------------------GLENMRQAQRLR-- 1034

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV------ 555
                        ++   EG+ R    H  GI++        +P   DV    PV      
Sbjct: 1035 ------------LANGCEGVKRTTGQHPGGIIV--------IPSSMDVYDFTPVQYPANN 1074

Query: 556  -------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
                   T F+   I    ++KFD LG    T ++     L Q    +D + IP +D ET
Sbjct: 1075 PDSEWKTTHFDFHDIHD-NVLKFDILGHVDPTAMR-----LLQNISGIDPTTIPMNDPET 1128

Query: 609  YHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              +  +               G +G+ +  +  +R  LE  +P    +++ +  L     
Sbjct: 1129 MSIFNSVDALKADPRVYGEATGAVGLPEFGTKFVRGILELTRPSTFSELLRISGLSH--- 1185

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
                V  NN K+  +  +++H            VI  ++ +M               ++ 
Sbjct: 1186 -GTDVWLNNAKDLIDGGLTLH-----------DVIGCRDDIMTY-------------LIE 1220

Query: 715  RAMGKK----IKEEMDKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            + M KK    I E + K K     +I    +N I +    +  ++      Y F K+HA 
Sbjct: 1221 KGMPKKDSFFIMESVRKGKGLKPEWIELMKENNIPQWYIDSCLKI-----KYLFPKAHAV 1275

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            AY +++ + AW K H+P  +  A  TL  D  E
Sbjct: 1276 AYVMMAIRIAWFKVHHPYWYYVAFFTLRCDAYE 1308


>gi|315302974|ref|ZP_07873694.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            ivanovii FSL F6-596]
 gi|313628654|gb|EFR97067.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            ivanovii FSL F6-596]
          Length = 1452

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 197/934 (21%), Positives = 333/934 (35%), Gaps = 213/934 (22%)

Query: 76   DIDMQDNLK-MTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            DID  D+L     +G       P    +   TA G + L +L++ M  ++   +  RI  
Sbjct: 604  DIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT-MSNINYFYRVPRIPR 662

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL-QRHR 190
            S L+++  EGLI+ T  S G +  A        AEK      F ++    +Y  L +R  
Sbjct: 663  SQLKKL-REGLIIGTACSQGELFEAMMQKGMLAAEKVAEFYDFIEIQPKPVYAPLIEREL 721

Query: 191  GYDRYRESQV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
              D     ++    V++      P+VAT N  +    D     +L+   HS   +     
Sbjct: 722  VRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILI---HSQGGANPLNR 778

Query: 247  RVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               PD + ++  EM+  F+ L E  A E  V  +      ++   PI       + D  +
Sbjct: 779  AELPDVHFRSTDEMLKEFAFLGEEKAKEVVVTNSNLVVDWMEELKPIKDELYTPKIDGAE 838

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             E  N   N A      +L +   A          RL+ EL  I    F+  +LI    +
Sbjct: 839  DEVRNMSYNMAHQLYGEKLPEIVEA----------RLEKELKSIIGHGFAVIYLISHKLV 888

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL--------------------- 403
            + +  +   VG  RGS   S  A    IT+++PL    L                     
Sbjct: 889  KKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCQDSEFFDDGSIGSGFDL 947

Query: 404  --------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                                FE FL      +PD D++F  D +     Y +  +G + V
Sbjct: 948  PDKDCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYV 1007

Query: 444  AQIITFGSLQAKAA---LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
             +  T G++  K A   +R+  R + M                                 
Sbjct: 1008 FRAGTIGTVAEKTAFGYVRNYERDMNM--------------------------------- 1034

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----- 555
              +    +DRL+       G+ R    H  GI++        +P Y DV    PV     
Sbjct: 1035 -TIRGAEIDRLV---AGCTGVKRTTGQHPGGIIV--------IPNYMDVYDFTPVQFPAD 1082

Query: 556  --------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                    T F+   I    ++K D LG    T ++   D        +D   IP DD +
Sbjct: 1083 ATDSEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPD 1136

Query: 608  TYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
               L               +  GTLGI +  +  +RQ LE  +P    +++ +  L    
Sbjct: 1137 VMKLFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG- 1195

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               ++ + N  +  K K   + P +     +    +IYQ        L S  +    + +
Sbjct: 1196 --TDVWLGNAEELIKNKTCEL-PDVIGCRDDIMVFLIYQ-------GLESSLAFKIMESV 1245

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+  GK + EEM++             ++  + +   E   K   Y F K+HAAAY +++
Sbjct: 1246 RK--GKGLTEEMEEAM-----------MANNVPLWYIESCKKIK-YMFPKAHAAAYVLMA 1291

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQD---------------- 808
             + A+ K HYP+ F A   T+  D+          E +K   ++                
Sbjct: 1292 VRIAYFKVHYPLYFYATYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLL 1351

Query: 809  ----------ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                      AR F+ Q +     +   +F +  + +     AI  +GT  A+ I+ A  
Sbjct: 1352 TVLEIANEMLARGFHFQKV-DLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAARE 1410

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +  F S ED   R    K+++ +++ +   G L+
Sbjct: 1411 NGEFLSKEDLQQR---GKVSKTIIQYMDDQGCLE 1441


>gi|227432323|ref|ZP_03914316.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp.
            cremoris ATCC 19254]
 gi|227351929|gb|EEJ42162.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp.
            cremoris ATCC 19254]
          Length = 1437

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 187/927 (20%), Positives = 334/927 (36%), Gaps = 245/927 (26%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             LLV  A G + L +LVSR  + +   +  RI  S L++   EGL++ TG +SG +  + 
Sbjct: 613  TLLVQNATGLKNLYKLVSRSNI-EFFARVPRIPRSILEQY-REGLLVGTGDTSGDVIISL 670

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRES--------------QVVQLAY 205
                 Q AEK+   +        ++ +Q    Y    ES               +V +  
Sbjct: 671  IEKGIQEAEKKAAYYD-------FIEIQPTANYQPMIESGLIATEEKLQSILKDIVAIGD 723

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR---VTPDHYLKNRSEMVS 262
              + P+V T +  + + ED    ++L+A       +Q   P+     PD   K   E++ 
Sbjct: 724  KLKKPVVVTEDVKYTNPEDKIYRNILIA-------TQPGNPQNRTALPDLNFKTTQELLD 776

Query: 263  IF----SDLPEAL--ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             +    +DL + L  +NT  +A     I  + +   P  I    D++    E   R    
Sbjct: 777  DYAFMGADLAKKLVIDNTHLVANMLEDIDPLKSGSYPPNIPGAGDELT---ERTYRT--- 830

Query: 317  AGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                        AK ++ +    + + R+D EL  I    F+ +++I    +  + K+  
Sbjct: 831  ------------AKQWYGEPIPKEIQARIDQELKAIIGNGFAPHYIIAQRLVAKSVKDGY 878

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPL----------RFSLL------------------- 403
             VG  RGS   S  A    IT+++PL           F L+                   
Sbjct: 879  LVG-SRGSVGSSFVATMSGITEVNPLPPHYRSAHGDYFELVDPKEYESGYDLPEKEDPNH 937

Query: 404  -------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
                         FE F+      +PD D++F  D +     Y++  +G   V +  T  
Sbjct: 938  PGEFLIGDGQNIPFETFMGFTGNKVPDIDLNFSGDYQPIAHNYMKVLFGEHNVYRAGTIA 997

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            ++  K A   V +A +  +                         D  +R A      ++R
Sbjct: 998  TVAEKTAFGYV-KAYEREH-------------------------DQHYRGAE-----IER 1026

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEK 565
            L   +Q + G+ R    H  GI+I  R   +    P+     D +S    T  +   I  
Sbjct: 1027 L---AQGMTGVKRTTGQHPGGILIVPREYEVYDFTPIQYPADDQKSLWQTTHMDYHSIHD 1083

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT----------- 614
              L+K D LG    T+++   D        +D   IP +D     L T+           
Sbjct: 1084 -NLLKMDILGHDDPTMVRTLKDMSG-----IDPQSIPANDPGVLSLFTSTEALGVTPEQI 1137

Query: 615  ---KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP-----GPIDNIVVYNNRKN 666
                GTLG+ +  ++ +R  L   QP    +++ +  L        G  + ++     KN
Sbjct: 1138 FSNTGTLGLPEFGTNFVRGMLAETQPHTYSELLQISGLSHGTDVWLGNANELI-----KN 1192

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL----RRAMGKKIK 722
            G   I ++    D ++ +                 L  + +  AD      +   GK I 
Sbjct: 1193 GTATIGTVIGTRDKIMTD-----------------LINWGVPAADAFNIMEKVRKGKGIT 1235

Query: 723  EEMDKQ-KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            EE  KQ +E  I       + K               Y F ++HAAAY +++ + A+ K 
Sbjct: 1236 EEYQKQLREEKIPEWYIQSMLKI-------------KYMFPRAHAAAYVLMALRIAYFKV 1282

Query: 782  HYPVEFLAASMTLEMD----------------NVEKIKKFCQDAR--------------- 810
            ++P  + A   ++  D                 ++K+K    DA                
Sbjct: 1283 YFPTIYYATYFSVRADAFDIVAMSRGKDATKAAIQKLKSLGNDATVGDKNLLTVLEMANE 1342

Query: 811  --QFNIQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
              + NI      +N +  +++ +  + +     ++ G+G   A+ I+    +KPF S ED
Sbjct: 1343 ALERNISFAMVDLNKSEALEWVIDGDTLIPPFVSLPGLGDNVAKQIVAERTEKPFISKED 1402

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCF 894
               R    K+++ ++E +     LD  
Sbjct: 1403 LKKR---GKVSQTIIEFMTLHSVLDGL 1426


>gi|331703357|ref|YP_004400044.1| DNA polymerase III subunit alpha [Mycoplasma mycoides subsp. capri LC
            str. 95010]
 gi|328801912|emb|CBW54065.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. capri LC
            str. 95010]
          Length = 1482

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 112/524 (21%), Positives = 192/524 (36%), Gaps = 130/524 (24%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             +RL+ EL  I +  F+  + I    ++ +  +   VG  RGS   S  A    IT+++P
Sbjct: 879  EKRLEKELGSITKHGFAIVYWISHLLVKQSLDDGYLVG-SRGSVGSSFVATMAQITEVNP 937

Query: 398  LR-----------------------------------------FSLLFERFLNPDRMSMP 416
            L+                                           + FE FL  D   +P
Sbjct: 938  LKAHYRCLNCKYSDFNTDPTYKCGYDLPEKNCPNCNQKLIGDGHDIPFETFLGFDGDKVP 997

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D++F  + +++   + +  +G   V +  T  ++  K A   V               
Sbjct: 998  DIDLNFSGEYQNQAHNFTKKMFGENNVFRAGTISTVAEKTAFGYVK-------------- 1043

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ--KL-EGLYRHASTHAAGIV 533
                               + F E +  D S+ R  EI++  KL +G+ R    H  GI+
Sbjct: 1044 -------------------TYFEETK-KDASLPRKTEINRLAKLAQGVKRTTGQHPGGII 1083

Query: 534  I--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            I   +  +    P+     D+ S    T F+   I    L+K D LG    T L+   D 
Sbjct: 1084 ILPNEYEMEDFTPVNYPADDLSSTWKTTHFDFHSIHD-NLLKMDILGHDDPTALKMLRDL 1142

Query: 589  LAQRGVKVDLSLIPFDDHETYHLLTT---------------KGTLGIFQLESSGMRQALE 633
                   +D   IP DD   Y L ++                G +GI +  +  +R  L+
Sbjct: 1143 -----TNIDPITIPTDDKNVYSLFSSLQALNLTSDKINDEITGAIGIPEFGTGFVRNMLK 1197

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              QP    D++ +  L       ++ + N R   K+K   I  +I         +++Y  
Sbjct: 1198 ETQPKTFADLVQISGLSHGT---DVWLGNARDLIKDKKADISTVIGC----RDDIMVY-- 1248

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
             ++ +  L S  +    + +R+  G K KE +D  K+  +     +   K          
Sbjct: 1249 -LINMG-LESSLAFMIMESVRKGKGLK-KEWIDIMKQYNVPDWYIDSCLKI--------- 1296

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
                 Y F K+HA AY +++Y+ AW K +YP E+ A  +T   D
Sbjct: 1297 ----KYMFPKAHATAYVLMAYRIAWYKIYYPTEYYATYLTTRAD 1336


>gi|312869005|ref|ZP_07729182.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            oris PB013-T2-3]
 gi|311095431|gb|EFQ53698.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            oris PB013-T2-3]
          Length = 1444

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 183/887 (20%), Positives = 317/887 (35%), Gaps = 205/887 (23%)

Query: 99   IVLLVSTAEGYQRLIELVS--RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
            + LL  T  G + L +LVS   +    +  +  R  L+  +E    GL++ T  SSG + 
Sbjct: 616  VTLLAQTQAGLKNLFKLVSLSNVRYFHRVPRIPRTVLTKYRE----GLLLGTACSSGEVF 671

Query: 157  RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV--------------VQ 202
             A        A K+   +        Y+ +Q    Y    E+ V              V+
Sbjct: 672  TAMMEKGYPEALKKARYYD-------YIEIQPRPNYAPLLETHVIADRDHLDDILQNMVK 724

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            L    + P+VAT +  +++  D     +L+          + R    PD + +   EM+ 
Sbjct: 725  LGTELKKPVVATGDVHYINPHDGIYRRILINSQGGANPLNRTR---RPDVHFRTTDEMLE 781

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
             FS L E     V +    +    +   I P   +K      K  E E++++        
Sbjct: 782  EFSFLGEDTAKQVVVDNSHAIADMIADDIRP-VKDKLYTPHMKGAEQEIQDRT------- 833

Query: 323  LAQGAIAKGYHAQDY----RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
                  AK ++        + R++ ELN I +  FS  +LI    +  + K+   VG  R
Sbjct: 834  ---WNTAKAWYGNPLPKIVKDRVELELNSIVKNGFSVIYLIAQRLVAKSNKDGYLVG-SR 889

Query: 379  GSGAGSVTAYALTITDIDPL---------RFS---------------------------- 401
            GS   SV A    IT+++PL         +F+                            
Sbjct: 890  GSVGSSVVATLSGITEVNPLPPHYRCPKCQFAHFYTKGEYSSGFDLPEKKCPKCGTLLVK 949

Query: 402  ----LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
                + F+ FL      +PD D++F  D +     Y++  +G E V +  T G++  K A
Sbjct: 950  DGHDIPFQTFLGFKGNKVPDIDLNFSGDYQPIAHNYMKVLFGEENVFRAGTIGTVADKTA 1009

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
                       Y  V    K    D           +D +FR A       DRL   SQ 
Sbjct: 1010 -----------YGYV----KAFERD-----------NDVQFRGA-----EEDRL---SQG 1035

Query: 518  LEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFD 572
              G+ R    H AGI+I   D  +    P+     D  +    T F+   I    ++K D
Sbjct: 1036 ATGVKRTTGQHPAGIIIVPDDMDIYDFTPVQYPADDQNAAWETTHFDFHSIHD-NILKMD 1094

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTL 618
             LG    T+++   D        +D   IP +D     L ++               GTL
Sbjct: 1095 ILGHDDPTMIRALQDLSG-----IDPKTIPMNDPGVMALFSSPRILGVTEEQIQSKTGTL 1149

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G+ +  +  +R  L+   P     ++ +  L        + + N ++  KE   +I  +I
Sbjct: 1150 GLPEFGTRFVRGMLDDTHPKNYSQLLQISGLSHG---TGVWLDNAQELIKEGTATIANVI 1206

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
                     +I Y         L S  S    + +R+  G+ I +E   Q +    G  +
Sbjct: 1207 GCRDNIMTDLIHY--------GLDSETSFQVMEHVRK--GRGIPDEW--QSKMLKVGVPQ 1254

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
              +   + +           Y F ++HAAAY +++ + A+ K ++P+ +  A  ++  D+
Sbjct: 1255 WYLDSCLKIK----------YMFPRAHAAAYVLMALRIAYFKVYFPLVYYCAFFSVRADD 1304

Query: 799  VEKIK----KFCQDARQFNI----------------------QIMPPSVNTPCVDFKVGD 832
             + +     K    AR   I                      +++        VD +  D
Sbjct: 1305 FDIVAMAHGKEAVKARMAEISNKGNDASAKEKSLLTILELANEMLERGFKFKMVDLERSD 1364

Query: 833  --------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    N +     AI G+G + A+ I+ A  ++PF S E+   R
Sbjct: 1365 ASNWLIDGNSLIAPFRAIPGLGLSVAKQIVAAREERPFLSKEELADR 1411


>gi|227824506|ref|ZP_03989338.1| DNA polymerase III [Acidaminococcus sp. D21]
 gi|226905005|gb|EEH90923.1| DNA polymerase III [Acidaminococcus sp. D21]
          Length = 1210

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 185/868 (21%), Positives = 324/868 (37%), Gaps = 182/868 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  H+  S ++G   +  ++D  A     A+AITD + +  A  F+            
Sbjct: 300  IELHCHTKMSKMDGLTPIEELVDTAAKWGHKALAITD-HGVVQAYPFAYDEAVK----FK 354

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
              +L   ++  L  + + K  +     I+LL  +  G + L  LVS  +L   G +  R 
Sbjct: 355  DFKLIFGVEGYLCHSKEDKKNY----HIILLAKSFAGLRNLYRLVSLSHLQYFGGKPKRP 410

Query: 132  CLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
             ++  L E   + +I+ +  ++G + RA    +S     ++  F      +   N Q   
Sbjct: 411  RMTKGLIEQYRDDIIIGSACAAGEVYRAILSGASHEELLQIADFYDYLEIQPCGNNQYLL 470

Query: 191  GYDRYRESQVVQ---------LAYTHELP--LVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              DRY E    +         LA   EL   +VAT +  FL+ ED  A  +L A      
Sbjct: 471  RDDRYPEINTWEDLQTINKKILALGDELGKLVVATCDVHFLNPEDAIARRILQAGMGYPD 530

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
              Q       P  YL+   EM+  FS L +  A E  VE   + + +++   P+  R   
Sbjct: 531  EEQ-------PPLYLRTTEEMLEEFSYLGKERAYEVVVENTNKINDMIEKFKPVPDR--- 580

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARM 351
                       ++L +  + G + ++   +  + +        +    RL  EL+ I   
Sbjct: 581  -----------DQLYSPMIPGAKEKVESMSYGRAHEWYGPKLPKIVEDRLKLELSSIIGN 629

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------- 398
             FS  + I    ++ +  +   VG  RGS   S  A  L IT+++PL             
Sbjct: 630  GFSVLYYIAHLLVKKSNDDGYMVG-SRGSVGSSFVATMLNITEVNPLPPHYRCPHCYHTE 688

Query: 399  ----------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
                                          ++ F  FL      +PD D++F  + +   
Sbjct: 689  WFTDGSVGSGFDLADKACPECGTMMVKDGHNIPFAVFLGFHGDKVPDIDLNFSGEYQPRA 748

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
             +Y ++ +G + V +  T G++  K A   + +  +      +R      N+P     ++
Sbjct: 749  HKYTEDLFGRDNVFRAGTLGTIADKTAYGYIKKYYE------NR------NEPKRTAFIE 796

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPM--- 545
             +                        KL G+ R    H AGI++  R L    L P+   
Sbjct: 797  GLI----------------------PKLVGVKRTTGQHPAGIMVVPRDLDVHYLTPVSYP 834

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
              D       T ++   I    ++K D LG    T+++   + L +   K     IP  D
Sbjct: 835  ADDPTCGTITTHYDYHSINDR-IVKLDILGHDDPTMIRMLDNMLGEGYCKN----IPVGD 889

Query: 606  HETYHL-LTTK-------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +T  L L+TK              T G+ +  +  +RQ +  ++P    D++  +S Y 
Sbjct: 890  PDTMELFLSTKSIGVSPEDIMTDVATYGVPECGTRFVRQMISDVKPKNFSDLLR-ISGYS 948

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA- 710
             G      V+ N  N ++ I +  P        T+  I  ++ +M    +  G   S A 
Sbjct: 949  HG----TDVWLN--NAQDLIKNGTP--------TEDTISTRDDIMNWL-INKGMEPSMAF 993

Query: 711  DVLRRA-MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL---AKFADYGFNKSHA 766
             ++  A  GK  K+    ++E     A           NI E      K   Y F K+HA
Sbjct: 994  GIMEWARKGKAHKQGFKAEQEEAFKKA-----------NIPEFYIKSCKTLQYLFPKAHA 1042

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTL 794
             AY + +Y+ A+ K H+P EF +A  T+
Sbjct: 1043 VAYVLSAYRIAYCKVHHPKEFYSAYFTI 1070


>gi|116872751|ref|YP_849532.1| DNA polymerase III PolC [Listeria welshimeri serovar 6b str.
            SLCC5334]
 gi|123466238|sp|A0AIC1|DPO3_LISW6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116741629|emb|CAK20753.1| DNA polymerase III [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 1444

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 187/908 (20%), Positives = 324/908 (35%), Gaps = 211/908 (23%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +   T  G + L +L++ M  ++   +  RI  S L+++  EGLI+ T  S G +  A 
Sbjct: 622  TIYAQTDVGLKNLFKLIT-MSNINYFYRVPRIPRSQLKKL-REGLIVGTACSQGELFEAM 679

Query: 160  FFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 Q AEK +  +       K ++   +   L R           +V++      P+V
Sbjct: 680  MQKGMQAAEKVVEFYDFIEIQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKAGKPVV 739

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--A 270
            AT N  +    D     +L+   HS   +        PD + ++  EM+  F+ L E  A
Sbjct: 740  ATGNVHYKDPVDKIYRKILI---HSQGGANPLNRAELPDVHFRSTDEMLKEFAFLGEEKA 796

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
             E  V  +      ++   PI       + D      E+E+RN     +   +A     +
Sbjct: 797  KEVVVTNSNLVVDWMEELKPIKDELYTPKIDGA----EDEVRN-----MSYDMAHQLYGE 847

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                +    RL+ EL  I    F+  +LI    ++ +  +   VG  RGS   S  A   
Sbjct: 848  NL-PEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRGSVGSSFVATMT 905

Query: 391  TITDIDPLRFSLL-----------------------------------------FERFLN 409
             IT+++PL    L                                         FE FL 
Sbjct: 906  EITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPDKECPHCGTAYQKEGQDIPFETFLG 965

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA---LRDVGRALQ 466
                 +PD D++F  D +     Y +  +G + V +  T G++  K A   +R+  R + 
Sbjct: 966  FKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFRAGTIGTVAEKTAFGYVRNYERDMN 1025

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
            M                                   +    +DRL+       G+ R   
Sbjct: 1026 M----------------------------------TIRGAEIDRLV---AGCTGVKRTTG 1048

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDF 573
             H  GI++        +P Y DV    PV             T F+   I    ++K D 
Sbjct: 1049 QHPGGIIV--------IPDYMDVYDFTPVQFPADATDSEWKTTHFDFHSIHD-NVLKLDI 1099

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLG 619
            LG    T ++   D        +D   IP DD +   L               +  GTLG
Sbjct: 1100 LGHDDPTAIRMLQDLSG-----IDPKTIPTDDPDVMKLFGSTESLGVKPADIDSKTGTLG 1154

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            I +  +  +RQ LE  +P    +++ +  L       ++ + N  +  K K   + P + 
Sbjct: 1155 IPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG---TDVWLGNAEELIKNKTCEL-PDVI 1210

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
                +    +IYQ        L S  +    + +R+  GK + EEM++            
Sbjct: 1211 GCRDDIMVFLIYQ-------GLESSLAFKIMESVRK--GKGLTEEMEEAM---------- 1251

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
             ++  + +   E   K   Y F K+HAAAY +++ + A+ K HYP+ F A   T+  D+ 
Sbjct: 1252 -MANKVPLWYIESCKKIK-YMFPKAHAAAYVLMAVRIAYFKVHYPLYFYATYFTVRADDF 1309

Query: 800  ---------EKIKKFCQD--------------------------ARQFNIQIMPPSVNTP 824
                     E +K   ++                          AR F+ Q +     + 
Sbjct: 1310 DLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQKV-DLYKSS 1368

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              +F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    K+++ +++ 
Sbjct: 1369 ADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---GKVSKTIIQY 1425

Query: 885  LVFAGALD 892
            +   G L+
Sbjct: 1426 MDDQGCLE 1433


>gi|167947393|ref|ZP_02534467.1| DNA polymerase III subunit alpha [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 92

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 59/90 (65%), Gaps = 4/90 (4%)

Query: 512 LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
           +++++KLEGL R+A  HA G+VI    L+   P+Y +      VTQF+   +E+AGL+KF
Sbjct: 1   IKMARKLEGLARNAGKHAGGVVIAPGLLTDFAPLYCEEGGGNLVTQFDKNDVEQAGLVKF 60

Query: 572 DFLGLKTLTLLQKSLDFL----AQRGVKVD 597
           DFLGL+TLT++  +L  +    A++G+  D
Sbjct: 61  DFLGLRTLTIIDWALQTVNAGRAKQGLGAD 90


>gi|317498937|ref|ZP_07957220.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893770|gb|EFV15969.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 1228

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 157/790 (19%), Positives = 285/790 (36%), Gaps = 172/790 (21%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++V L      P+VAT +  FL+ +D     +L+A         KD  +  P  Y +   
Sbjct: 503  KIVDLGEQFHKPVVATCDVHFLNPDDAIYRSILLAGK-----GFKDADQQAP-LYFRTTQ 556

Query: 259  EMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR---- 312
            EM+  F+ L   +A E  +    + + +++  +PI P     +C  +  + +  LR    
Sbjct: 557  EMLDEFAYLGSEKAKEVVITNTNKINDMIENISPIHP----DKCPPVIPDSDKTLREICY 612

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            N+A       L +   +          RL+ ELN I    ++  ++I    +  +  +  
Sbjct: 613  NRAHEIYGDDLPERVTS----------RLEKELNSIIGNGYAVMYIIAQKLVWDSNDHGY 662

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLL----------------------------- 403
             VG  RGS   S  A    IT+++PL    +                             
Sbjct: 663  LVG-SRGSVGSSFAATMSGITEVNPLPAHYICPECHFVDFDSEQVQKYAKMGMSGFDMPD 721

Query: 404  ------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                              FE FL       PD D++F  + + +   YV+  +G  +  +
Sbjct: 722  AYCPKCGAKMTKEGQDIPFETFLGFKGNKEPDIDLNFSGEYQGKAHAYVEVIFGKGKAFR 781

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G+L  K A   V + L+       R C++                       RLA 
Sbjct: 782  AGTIGTLAEKTAYGYVLKYLE-ERGISKRRCEI----------------------ERLA- 817

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNM 560
                          G+ R    H  GI++   D+ +     +     D+ + +  T F  
Sbjct: 818  ----------LGCTGVKRTTGQHPGGIIVVPHDKEIYDFTAVQHPANDMNTPIITTHFEY 867

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
              I++  L+K D LG    +++++  D        +D   IP DD     L     TLGI
Sbjct: 868  HSIDQ-NLLKLDILGHDDPSMIRRMEDITG-----IDAQTIPMDDKGVMGLFHGTETLGI 921

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
               +  G      G+     + +I ++    P    ++V  +   +G           D 
Sbjct: 922  TPEDIDGTPLGSLGVPEFGTDFVIQMLQDTHPQSFSDLVRISGLSHGT----------DV 971

Query: 681  MLKETQGVIIYQEQVMQIAQLLSG----YSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
             L   Q +I   + V+  A         Y +++   L +    KI E + K K   ++  
Sbjct: 972  WLGNAQTLIENGDAVISTAICCRDDIMVYLINQG--LEQEASFKIMEGVRKGKG--LTDE 1027

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL-- 794
             +  +      + +    K   Y F K+HAAAY +++++ AW K ++P+ + AA  ++  
Sbjct: 1028 QEQMMRDHNVPDWYIWSCKQIKYMFPKAHAAAYVMMAWRIAWYKVYHPLAYYAAYFSIRA 1087

Query: 795  ----------------------------EMDNVE----KIKKFCQDARQFNIQIMPPSV- 821
                                        E+ N +    +  K   +      +  P  + 
Sbjct: 1088 KAFSYEDMCLGKERLDEKMSIIKNTPKHEVKNADLDLLREMKIADEMYARGYEFWPLDIY 1147

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                 DF+V D +I  +L +I G+G   A+ + EA+  +PF SLE+F +R  + +     
Sbjct: 1148 KAKAKDFQVIDGKIMPALTSIDGMGEKAAQQVEEAAKGEPFTSLENFRNRTKAPQACIEK 1207

Query: 882  LESLVFAGAL 891
            ++ L   G L
Sbjct: 1208 MKELGIMGDL 1217


>gi|16800425|ref|NP_470693.1| DNA polymerase III PolC [Listeria innocua Clip11262]
 gi|21263558|sp|Q92C34|DPO3_LISIN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|16413830|emb|CAC96588.1| polC [Listeria innocua Clip11262]
 gi|313619136|gb|EFR90925.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            innocua FSL S4-378]
          Length = 1444

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 192/912 (21%), Positives = 325/912 (35%), Gaps = 219/912 (24%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +   T  G + L +L++ M  ++   +  RI  S L+++  EGLI+ T  S G +  A 
Sbjct: 622  TIYAQTDVGLKNLFKLIT-MSNINYFYRVPRIPRSQLKKM-REGLIIGTACSQGELFEAM 679

Query: 160  FFNSSQVAEK--RLLTF-----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                 Q AEK      F     K ++   +   L R           +V++      P+V
Sbjct: 680  MQKGMQAAEKVAEFYDFIEVQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVV 739

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE 272
            AT N  +    D     +L+   HS   +        PD + ++  EM+  F+ L E  E
Sbjct: 740  ATGNVHYKDPVDKIYRKILI---HSQGGANPLNRAELPDVHFRSTDEMLKEFAFLGE--E 794

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE--VRLAQGAIAK 330
               EI    S             +    DD+ K  ++EL    + G E  VR     +A 
Sbjct: 795  KAKEIVVTNS-----------NLVVDWMDDL-KPIKDELYTPKIDGAEDEVRNMSYGMAH 842

Query: 331  GYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
              + +   +    RL+ EL  I    F+  +LI    ++ +  +   VG  RGS   S  
Sbjct: 843  QLYGEKLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRGSVGSSFV 901

Query: 387  AYALTITDIDPLRFSLL-----------------------------------------FE 405
            A    IT+++PL    L                                         FE
Sbjct: 902  ATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPDKDCPHCGTPYQKEGQDIPFE 961

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA---LRDVG 462
             FL      +PD D++F  D +     Y +  +G + V +  T G++  K A   +R+  
Sbjct: 962  TFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFRAGTIGTVAEKTAFGYVRNYE 1021

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            R + M                                   +    VDRL+       G+ 
Sbjct: 1022 RDMNM----------------------------------TIRGAEVDRLV---AGCTGVK 1044

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLI 569
            R    H  GI++        +P Y DV    PV             T F+   I    ++
Sbjct: 1045 RTTGQHPGGIIV--------IPDYMDVYDFTPVQFPADATDSEWKTTHFDFHSIHD-NVL 1095

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTK 615
            K D LG    T ++   D        +D   IP DD +   L               +  
Sbjct: 1096 KLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPDVMKLFGSTESLGVKPADIDSKT 1150

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
            GTLGI +  +  +RQ LE  +P    +++ +  L       ++ + N  +  K K   + 
Sbjct: 1151 GTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG---TDVWLGNAEELIKNKTCEL- 1206

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            P +     +    +IYQ        L S  +    + +R+  GK + EEM++        
Sbjct: 1207 PDVIGCRDDIMVFLIYQ-------GLESSLAFKIMESVRK--GKGLTEEMEEAM------ 1251

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                 I+  + +   E   K   Y F K+HAAAY +++ + A+ K H+P+ F A   T+ 
Sbjct: 1252 -----IANKVPLWYIESCKKIK-YMFPKAHAAAYVLMAVRIAYFKVHHPLYFYATYFTVR 1305

Query: 796  MDNV---------EKIKKFCQD--------------------------ARQFNIQIMPPS 820
             D+          E +K   ++                          AR F+ Q +   
Sbjct: 1306 ADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQKV-DL 1364

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
              +   +F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    K+++ 
Sbjct: 1365 YKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---GKVSKT 1421

Query: 881  VLESLVFAGALD 892
            +++ +   G L+
Sbjct: 1422 IIQYMDDQGCLE 1433


>gi|312876753|ref|ZP_07736732.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus
            6A]
 gi|311796484|gb|EFR12834.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus
            6A]
          Length = 1402

 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 132/647 (20%), Positives = 226/647 (34%), Gaps = 171/647 (26%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            + RL+ ELN I +  F+  +LI    +  +  +   VG  RGS   S+ A    IT+++P
Sbjct: 812  KARLEKELNSIIKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVGSSLVATMCGITEVNP 870

Query: 398  L---------RFS--------------------------------LLFERFLNPDRMSMP 416
            L         ++S                                + FE FL  D    P
Sbjct: 871  LPPHYVCPNCKYSEFVTDGSVGCGYDLEDKNCPRCGEKLKKDGHDIPFETFLGFDGDKEP 930

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D++F  D +    ++ +  +G   V +  T  ++  K A           Y++   L 
Sbjct: 931  DIDLNFSGDYQPIAHKFTEELFGQGYVFRAGTISTVAEKTA-----HGFVTKYAEEKGL- 984

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI-- 534
                    HP                        +L +SQ   G+ R    H  G++I  
Sbjct: 985  ------NLHPA----------------------EILRLSQGCTGVKRTTGQHPGGLMIVP 1016

Query: 535  GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             D+ +    P+     S    +  T F+   I    L+K D LG    T+++     + Q
Sbjct: 1017 RDKEIFDFTPIQHPADSGDKSVITTHFDYHAI-SGRLLKLDILGHDDPTVIR-----MLQ 1070

Query: 592  RGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQP 637
                VD   IP DD  T  + T+               GT GI +  +  +RQ L   +P
Sbjct: 1071 DLTGVDPRSIPLDDKATMSIFTSTEALGISPEDIDCEVGTFGIPEFGTRFVRQMLIETKP 1130

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQE 693
                +++ +  L       N+   N +   +  I ++  +I    D ML   Q  +  ++
Sbjct: 1131 KTFAELVRISGLSHGT---NVWTNNAQDLVRNGIATLKEVISTRDDIMLYLIQKGVPPKD 1187

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
                +  +  G  L   D       + I+E      + +I    K               
Sbjct: 1188 SFRIMEDVRKGKGLKPED------EQLIREH--NVPDWYIESCKK--------------- 1224

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------- 800
                 Y F K+HAAAY +++++ A+ K HY   F A   T+  D+ +             
Sbjct: 1225 ---ITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYFTVRADDFDYATILKGRDAIRQ 1281

Query: 801  -------KIKKFCQDARQF-------------NIQIMPPSVNTPCVD-FKVGDNRIYYSL 839
                   +I    Q  +                ++  P  +N    + F + D  +    
Sbjct: 1282 KIRDLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAERFIIKDGGLLIPF 1341

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             A+  VG   A+ I+EA  +  F S++D   R    KLN++V+E L 
Sbjct: 1342 NALPNVGVAAAKSIVEARKEGKFLSVDDLIRRA---KLNKQVIEILT 1385


>gi|256384095|gb|ACU78665.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            mycoides subsp. capri str. GM12]
 gi|256384927|gb|ACU79496.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            mycoides subsp. capri str. GM12]
 gi|296455696|gb|ADH21931.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic
            Mycoplasma mycoides JCVI-syn1.0]
          Length = 1482

 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 112/524 (21%), Positives = 192/524 (36%), Gaps = 130/524 (24%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             +RL+ EL  I +  F+  + I    ++ +  +   VG  RGS   S  A    IT+++P
Sbjct: 879  EKRLEKELGSITKHGFAIVYWISHLLVKQSLDDGYLVG-SRGSVGSSFVATMAQITEVNP 937

Query: 398  LR-----------------------------------------FSLLFERFLNPDRMSMP 416
            L+                                           + FE FL  D   +P
Sbjct: 938  LKAHYRCLNCKYSDFNTDPTYKCGYDLPEKNCPDCNQKLIGDGHDIPFETFLGFDGDKVP 997

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D++F  + +++   + +  +G   V +  T  ++  K A   V               
Sbjct: 998  DIDLNFSGEYQNQAHNFTKKMFGENNVFRAGTISTVAEKTAFGYVK-------------- 1043

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ--KL-EGLYRHASTHAAGIV 533
                               + F E +  D S+ R  EI++  KL +G+ R    H  GI+
Sbjct: 1044 -------------------TYFEETK-KDVSLPRKTEINRLAKLAQGVKRTTGQHPGGII 1083

Query: 534  I--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            I   +  +    P+     D+ S    T F+   I    L+K D LG    T L+   D 
Sbjct: 1084 ILPNEYEIEDFTPVNYPADDLNSTWKTTHFDFHSIHD-NLLKMDILGHDDPTALKMLRDL 1142

Query: 589  LAQRGVKVDLSLIPFDDHETYHLLTT---------------KGTLGIFQLESSGMRQALE 633
                   +D   IP DD   Y L ++                G +GI +  +  +R  L+
Sbjct: 1143 -----TNIDPITIPTDDKNVYSLFSSLQALNLTSDKINDEITGAIGIPEFGTGFVRNMLK 1197

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              QP    D++ +  L       ++ + N R   K+K   I  +I         +++Y  
Sbjct: 1198 ETQPKTFADLVQISGLSHGT---DVWLGNARDLIKDKKADISTVIGC----RDDIMVY-- 1248

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
             ++ +  L S  +    + +R+  G K KE +D  K+  +     +   K          
Sbjct: 1249 -LINMG-LESSLAFMIMESVRKGKGLK-KEWIDVMKQYNVPDWYIDSCLKI--------- 1296

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
                 Y F K+HA AY +++Y+ AW K +YP E+ A  +T   D
Sbjct: 1297 ----KYMFPKAHATAYVLMAYRIAWYKIYYPTEYYATYLTTRAD 1336


>gi|312793079|ref|YP_004026002.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kristjanssonii
            177R1B]
 gi|312180219|gb|ADQ40389.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
            kristjanssonii 177R1B]
          Length = 1402

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 132/649 (20%), Positives = 225/649 (34%), Gaps = 175/649 (26%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            + RL+ ELN I +  F+  +LI    +  +  +   VG  RGS   S+ A    IT+++P
Sbjct: 812  KARLEKELNSIIKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVGSSLVATMCGITEVNP 870

Query: 398  L---------RFS--------------------------------LLFERFLNPDRMSMP 416
            L         ++S                                + FE FL  D    P
Sbjct: 871  LPPHYVCPNCKYSEFVTDGSVGCGYDLEDKNCPRCGKKLKKDGHDIPFETFLGFDGDKEP 930

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D++F  D +    ++ +  +G   V +  T  ++  K A           Y++   L 
Sbjct: 931  DIDLNFSGDYQPIAHKFTEELFGQGYVFRAGTISTVAEKTA-----HGFVTKYAEEKGL- 984

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI-- 534
                    HP                        +L +SQ   G+ R    H  G++I  
Sbjct: 985  ------NLHPA----------------------EILRLSQGCTGVKRTTGQHPGGLMIVP 1016

Query: 535  GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             D+ +    P+     S    +  T F+   I    L+K D LG    T+++     + Q
Sbjct: 1017 RDKEIFDFTPIQHPADSGDKSVITTHFDYHAI-SGRLLKLDILGHDDPTVIR-----MLQ 1070

Query: 592  RGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQP 637
                VD   IP DD  T  + T+               GT GI +  +  +RQ L   +P
Sbjct: 1071 DLTGVDPRSIPLDDKATMSIFTSTEALGISPEDIDCEVGTFGIPEFGTRFVRQMLIETKP 1130

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQE 693
                +++ +  L       N+   N +   +  I ++  +I    D ML   Q  +  ++
Sbjct: 1131 KTFAELVRISGLSHGT---NVWTNNAQDLVRNGIATLKEVISTRDDIMLYLIQKGVPPKD 1187

Query: 694  QVMQIAQLLSGYSLSEAD--VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
                +  +  G  L   D  +LR               + +I    K             
Sbjct: 1188 SFRIMEDVRKGKGLKPEDEQLLREH----------NVPDWYIESCKK------------- 1224

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------- 800
                   Y F K+HAAAY +++++ A+ K HY   F A   T+  D+ +           
Sbjct: 1225 -----ITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYFTVRADDFDYATILKGRDAI 1279

Query: 801  ---------KIKKFCQDARQF-------------NIQIMPPSVNTPCVD-FKVGDNRIYY 837
                     +I    Q  +                ++  P  +N    + F + D  +  
Sbjct: 1280 RQKIRDLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAERFIIKDGGLLI 1339

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
               A+  VG   A+ I+EA  +  F S++D   R    KLN++V+E L 
Sbjct: 1340 PFNALPNVGVAAAKSIVEARKEGKFLSVDDLIRRA---KLNKQVIEILT 1385


>gi|313633403|gb|EFS00239.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            seeligeri FSL N1-067]
          Length = 1452

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 193/938 (20%), Positives = 337/938 (35%), Gaps = 221/938 (23%)

Query: 76   DIDMQDNLK-MTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            DID  D+L     +G       P    +   TA G + L +L++ M  ++   +  RI  
Sbjct: 604  DIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT-MSNINYFYRVPRIPR 662

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLFGDRLYVNL 186
            S L ++  EGLI+ T  S G +  A      Q AEK    +       K ++   +   L
Sbjct: 663  SQLNKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVADFYDFIEIQPKPVYAPLIEREL 721

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R           +V++      P+VAT N  +    D     +L+   HS   +     
Sbjct: 722  VRDEKALEEILKNIVRVGEKAGKPVVATGNVHYKDPVDKIYRKILI---HSQGGANPLNR 778

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               PD + ++  EM+  F+ L E          +   ++  ++ ++  +IE       K 
Sbjct: 779  AELPDVHFRSTDEMLKEFAFLGE---------EKAKEVVVTNSNLVVDWIED-----LKP 824

Query: 307  EENELRNKAVAGLE--VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             ++EL    + G E  VR    ++A   + +   +    RL+ EL  I    F+  +LI 
Sbjct: 825  IKDELYTPKIDGAEDEVRNMSYSMAHQLYGETLPEIVEARLEKELKSIIGHGFAVIYLIS 884

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL----------------- 403
               ++ +  +   VG  RGS   S  A    IT+++PL    L                 
Sbjct: 885  HKLVKKSLLDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKHSEFFDDGSIGS 943

Query: 404  ------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                    FE FL      +PD D++F  D +     Y +  +G
Sbjct: 944  GFDLPDKDCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFG 1003

Query: 440  HERVAQIITFGSLQAKAA---LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             + V +  T G++  K A   +R+  R + M                             
Sbjct: 1004 EDYVFRAGTIGTVAEKTAFGYVRNYEREMNM----------------------------- 1034

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV- 555
                  +    +DRL+       G+ R    H  GI++        +P Y DV    PV 
Sbjct: 1035 -----TIRGAEIDRLV---AGCTGVKRTTGQHPGGIIV--------IPDYMDVYDFTPVQ 1078

Query: 556  ------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
                        T F+   I    ++K D LG    T ++   D        +D   IP 
Sbjct: 1079 FPADATDSEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDLSG-----IDPKTIPT 1132

Query: 604  DDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            DD +   L               +  GTLGI +  +  +RQ LE  +P    +++ +  L
Sbjct: 1133 DDPDVMKLFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGL 1192

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
                   ++ + N  +  K K   + P +     +    +IYQ        L S  +   
Sbjct: 1193 SHG---TDVWLGNAEELIKNKTCEL-PEVIGCRDDIMVFLIYQ-------GLESSLAFKI 1241

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             + +R+  GK + EEM++             ++  + +   E   K   Y F K+HAAAY
Sbjct: 1242 MESVRK--GKGLTEEMEEAM-----------MANKVPLWYIESCKKIK-YMFPKAHAAAY 1287

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQD------------ 808
             +++ + A+ K H+P+ F A   T+  D+          E +K   ++            
Sbjct: 1288 VLMAVRIAYFKVHHPLFFYATYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKE 1347

Query: 809  --------------ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
                          AR F+ Q +     +   +F +  + +     AI  +GT  A+ I+
Sbjct: 1348 KNLLTVLEIANEMLARGFHFQKV-DLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIV 1406

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             A  +  F S ED   R    K+++ +++ +   G L+
Sbjct: 1407 AARENGEFLSKEDLQQR---GKVSKTIIQYMDDQGCLE 1441


>gi|225018411|ref|ZP_03707603.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum DSM
            5476]
 gi|224948829|gb|EEG30038.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum DSM
            5476]
          Length = 1453

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 175/824 (21%), Positives = 301/824 (36%), Gaps = 204/824 (24%)

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            +R + Y+R     +V+L      P+VAT +  F    D     ++MA      +  KD  
Sbjct: 724  ERLKEYNR----TIVKLGEHLGKPVVATCDVHFQDAADANYRAIIMAA-----LKFKDAD 774

Query: 247  RVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRF-----IEKE 299
               P  YL+   EM+  F+ L E  A E  V    + + +++     +P+      IE  
Sbjct: 775  NQAP-LYLRTTDEMLKEFAYLGEEKAYEVVVTNTNKIADMVEGDLRPIPKGTYTPKIEGA 833

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +D+Q+      R K + G  V             +  + RLD EL+ I +  FS  ++I
Sbjct: 834  EEDLQRITWQ--RAKDMYGDPV------------PELVKNRLDRELSSIIKHGFSVLYMI 879

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--------------------- 398
                +  ++ N   VG  RGS   S  A    I++++PL                     
Sbjct: 880  AQKLVYESESNGYLVG-SRGSVGSSFVATMAGISEVNPLPPHYACPNCKHSEFITDGSVG 938

Query: 399  --------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
                                   + FE FL  D    PD D++F  + +    RY +  +
Sbjct: 939  SGFDLPPKDCPHCGTFMNRDGHDIPFETFLGFDGDKAPDIDLNFSGEYQSSAHRYTEELF 998

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G + V +  T  ++  K A    G AL                               ++
Sbjct: 999  GKDHVFKAGTISTVAEKTAY---GYAL-------------------------------KY 1024

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDL 553
             E R         L +++  EG+ R    H  G+V+   D  +    P+     D  SD+
Sbjct: 1025 LEEREKTVHKAEELRLARGCEGIKRTTGQHPGGMVVVPSDYEVYDFTPVQHPADDANSDI 1084

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
              T F+   +    ++K D LG    TL +   D    + +      IP  D +   L T
Sbjct: 1085 ITTHFDFHSLHDT-ILKLDELGHDVPTLYKHLEDLTGTKVLD-----IPTSDEKVISLFT 1138

Query: 614  TK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            +               GTL + ++ +  +RQ L   QP C  D++ +  L         V
Sbjct: 1139 STEALGVTPEQIYSKTGTLSLPEMGTPFVRQMLLDSQPKCFSDLLQISGLSH----GTDV 1194

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
              NN ++          LI         VI  ++ +M        Y L +   L   M  
Sbjct: 1195 WLNNAQD----------LIKNGTCTISEVIGTRDNIMT-------YLLHKG--LEPKMAF 1235

Query: 720  KIKEEMDKQK------ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            KI E   K K      E  I    ++G+ +    +  ++      Y F K+HAAAY + +
Sbjct: 1236 KIMEITRKGKAPKLLTEEHIQAMKEHGVPQWYVDSCMKI-----KYMFPKAHAAAYVIAA 1290

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDN----------------VEKIKKFCQDARQ-----F 812
             +  W K + P+E+ AA  T+   +                +E++K    D  Q     F
Sbjct: 1291 IRLGWYKVYRPLEYYAAFFTVRGGDFDVETTMRGQGSVAMKLEELKAKGNDRSQKESDTF 1350

Query: 813  N------------IQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
            +            ++ +P  +  +  V + + D +I     ++KG+G   AR++ EA   
Sbjct: 1351 DTLLIINEMLCRGLEFLPVDLYKSHAVKYTIEDGKIRLPFNSLKGLGEAAARNLQEAGEQ 1410

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLL 902
              + S+++  +R     +++ V+E+L  AG   D    S+M L 
Sbjct: 1411 GEYISVDEVSTR---SGVSKSVIETLEEAGVFGDMPKTSQMTLF 1451


>gi|195978859|ref|YP_002124103.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus
            MGCS10565]
 gi|195975564|gb|ACG63090.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus
            MGCS10565]
          Length = 1465

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 142/676 (21%), Positives = 251/676 (37%), Gaps = 163/676 (24%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDH 252
            ++++    E P++AT N  ++  ED    D+++      A+ + T+   +  +P   P+ 
Sbjct: 726  LIEVGRRAEKPVLATGNVHYIEPEDAIYRDIIVRSLGQGALINRTIGRGEAAKPVPLPEA 785

Query: 253  YLKNRSEMVSIFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + +  +EM+  F+ L + L      +NT  +A R   +  V   +   +I+K        
Sbjct: 786  HFRTTNEMLDDFAFLGQDLAYEVVVQNTQALADRIEEVEVVKGDLYTPYIDKA------- 838

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                   + VA L  + A  AI           R++ EL  I    F+  +L     +  
Sbjct: 839  ------EETVAELTYQKA-FAIYGNPLPDIIDLRIEKELTSILGNGFAVIYLASQMLVNR 891

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------------- 398
            + +    VG  RGS   S  A  + IT+++P+                            
Sbjct: 892  SNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPSCQQSEFITDGSVGSGYDLPN 950

Query: 399  ----RFSLL---------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                R   L         FE FL  D   +PD D++F  D +      V++ +G E   +
Sbjct: 951  KACPRCGTLYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPNAHLDVRDIFGEEYAFR 1010

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V +  +  Y       K  P                        D
Sbjct: 1011 AGTVGTVAEKTAYGFV-KGYERDYG------KFYP------------------------D 1039

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---------- 555
              VDRL   +    G+ R    H  GIV+        +P Y DV    PV          
Sbjct: 1040 AEVDRL---AAGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQFPADDVTAS 1088

Query: 556  ---TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K  D        +D   IP DD +   L 
Sbjct: 1089 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPITIPADDPDVMALF 1142

Query: 613  --------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
                          T  G LGI +  ++ +R  +    P    +++ L  L       ++
Sbjct: 1143 SGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHG---TDV 1199

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             + N +   KE I ++  +I         +++Y    +  A L    + +  + +R+ + 
Sbjct: 1200 WLGNAQDLIKEGIATLKTVIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRKGLW 1251

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             KI EE   ++  +I    +N +         E   K   Y F K+HAAAY +++ + A+
Sbjct: 1252 LKISEE---ERSSYIKAMRQNNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAY 1303

Query: 779  MKTHYPVEFLAASMTL 794
             K H+P+ +  A  ++
Sbjct: 1304 FKVHHPIMYYCAYFSI 1319


>gi|55820164|ref|YP_138606.1| DNA polymerase III PolC [Streptococcus thermophilus LMG 18311]
 gi|81561132|sp|Q5M6H0|DPO3_STRT2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|55736149|gb|AAV59791.1| DNA polymerase III alpha subunit [Streptococcus thermophilus LMG
            18311]
          Length = 1464

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 133/676 (19%), Positives = 259/676 (38%), Gaps = 163/676 (24%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVS------QKDRPRVTPDH 252
            ++++A   + P++AT N  +++ ED    ++++ A+    +++      +  +P   P+ 
Sbjct: 725  LIEVANRLDKPVLATGNVHYINPEDAIYREIIVRALGQGAMINRPIGKGENAQPAPLPEA 784

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            + +  +EM+  F+ L + L   + +A   +   Q+          +E + ++K+    L 
Sbjct: 785  HFRTTNEMLDEFAFLGKDLAYEIVVANTQAMANQI----------EEVEVVKKD----LY 830

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               +   E ++A+   AK +             R++ EL+ I    F+  +L     +  
Sbjct: 831  TPYIDRAEEQVAEMTYAKAFELYGNPLPDIIDLRIEKELSSILGNGFAVIYLASQMLVNR 890

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL----------------------- 403
            + +    VG  RGS   S  A  + IT+++P+    L                       
Sbjct: 891  SNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYLCPKCQHSEFITDGSYGSGFDLPD 949

Query: 404  ------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                              FE FL  D   +PD D++F  D +      V++ +G +   +
Sbjct: 950  KECSECGTEYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEQYAFR 1009

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  + A   V +  +  Y++  R                              D
Sbjct: 1010 AGTVGTVADRTAYGFV-KGYERDYNKFYR------------------------------D 1038

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---------- 555
              VDRL   +  + G+ R+   H  GIV+        +P Y DV    PV          
Sbjct: 1039 AEVDRL---AMGVAGVKRNTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAA 1087

Query: 556  ---TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K  D        +D   I  DD +   L 
Sbjct: 1088 WQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG-----IDPKDIRADDPDVMKLF 1141

Query: 613  --------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
                          T+ G LGI +  ++ +R  +E   P    +++ L  L       ++
Sbjct: 1142 SGTEVLGVTPEQIGTSTGVLGIPEFGTNFVRGMVEETHPTTFAELLQLSGLSHG---TDV 1198

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             + N +   KE I ++  +I         +++Y    +  A L    + +  + +R+ M 
Sbjct: 1199 WLGNAQDLIKEGIATLKTVIGC----RDDIMVY----LMHAGLDPKMAFTIMERVRKGMW 1250

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             KI EE   ++  +I    +N +         E   K   Y F K+HAAAY +++ + A+
Sbjct: 1251 LKISEE---ERNGYIQAMRENNVPDWY----IESCGKIK-YMFPKAHAAAYVMMALRVAY 1302

Query: 779  MKTHYPVEFLAASMTL 794
             K H+P+ +  A  ++
Sbjct: 1303 FKVHHPIYYYCAYFSI 1318


>gi|55822053|ref|YP_140494.1| DNA polymerase III PolC [Streptococcus thermophilus CNRZ1066]
 gi|81559957|sp|Q5M1Y0|DPO3_STRT1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|55738038|gb|AAV61679.1| DNA polymerase III alpha subunit [Streptococcus thermophilus
            CNRZ1066]
          Length = 1464

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 133/676 (19%), Positives = 259/676 (38%), Gaps = 163/676 (24%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVS------QKDRPRVTPDH 252
            ++++A   + P++AT N  +++ ED    ++++ A+    +++      +  +P   P+ 
Sbjct: 725  LIEVANRLDKPVLATGNVHYINPEDAIYREIIVRALGQGAMINRPIGKEENAQPAPLPEA 784

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            + +  +EM+  F+ L + L   + +A   +   Q+          +E + ++K+    L 
Sbjct: 785  HFRTTNEMLDEFAFLGKDLAYEIVVANTQAMANQI----------EEVEVVKKD----LY 830

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               +   E ++A+   AK +             R++ EL+ I    F+  +L     +  
Sbjct: 831  TPYIDRAEEQVAEMTYAKAFELYGNPLPDIIDLRIEKELSSILGNGFAVIYLASQMLVNR 890

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL----------------------- 403
            + +    VG  RGS   S  A  + IT+++P+    L                       
Sbjct: 891  SNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYLCPKCQHSEFITDGSYGSGFDLPD 949

Query: 404  ------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                              FE FL  D   +PD D++F  D +      V++ +G +   +
Sbjct: 950  KECSECGTEYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEQYAFR 1009

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  + A   V +  +  Y++  R                              D
Sbjct: 1010 AGTVGTVADRTAYGFV-KGYERDYNKFYR------------------------------D 1038

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---------- 555
              VDRL   +  + G+ R+   H  GIV+        +P Y DV    PV          
Sbjct: 1039 AEVDRL---AMGVAGVKRNTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAA 1087

Query: 556  ---TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K  D        +D   I  DD +   L 
Sbjct: 1088 WQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG-----IDPKDIRADDPDVMKLF 1141

Query: 613  --------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
                          T+ G LGI +  ++ +R  +E   P    +++ L  L       ++
Sbjct: 1142 SGTEVLGVTPEQIGTSTGVLGIPEFGTNFVRGMVEETHPTTFAELLQLSGLSHG---TDV 1198

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             + N +   KE I ++  +I         +++Y    +  A L    + +  + +R+ M 
Sbjct: 1199 WLGNAQDLIKEGIATLKTVIGC----RDDIMVY----LMHAGLDPKMAFTIMERVRKGMW 1250

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             KI EE   ++  +I    +N +         E   K   Y F K+HAAAY +++ + A+
Sbjct: 1251 LKISEE---ERNGYIQAMRENNVPDWY----IESCGKIK-YMFPKAHAAAYVMMALRVAY 1302

Query: 779  MKTHYPVEFLAASMTL 794
             K H+P+ +  A  ++
Sbjct: 1303 FKVHHPIYYYCAYFSI 1318


>gi|116627026|ref|YP_819645.1| DNA polymerase III PolC [Streptococcus thermophilus LMD-9]
 gi|122268369|sp|Q03MX3|DPO3_STRTD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116100303|gb|ABJ65449.1| DNA polymerase III catalytic subunit, PolC type [Streptococcus
            thermophilus LMD-9]
 gi|312277486|gb|ADQ62143.1| DNA polymerase III polC-type [Streptococcus thermophilus ND03]
          Length = 1464

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 133/676 (19%), Positives = 259/676 (38%), Gaps = 163/676 (24%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVS------QKDRPRVTPDH 252
            ++++A   + P++AT N  +++ ED    ++++ A+    +++      +  +P   P+ 
Sbjct: 725  LIEVANRLDKPVLATGNVHYINPEDAIYREIIVRALGQGAMINRPIGKGENAQPAPLPEA 784

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            + +  +EM+  F+ L + L   + +A   +   Q+          +E + ++K+    L 
Sbjct: 785  HFRTTNEMLDEFAFLGKDLAYEIVVANTQAMANQI----------EEVEVVKKD----LY 830

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               +   E ++A+   AK +             R++ EL+ I    F+  +L     +  
Sbjct: 831  TPYIDRAEEQVAEMTYAKAFELYGNPLPDIIDLRIEKELSSILGNGFAVIYLASQMLVNR 890

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL----------------------- 403
            + +    VG  RGS   S  A  + IT+++P+    L                       
Sbjct: 891  SNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYLCPKCQHSEFITDGSYGSGFDLPD 949

Query: 404  ------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                              FE FL  D   +PD D++F  D +      V++ +G +   +
Sbjct: 950  KECSECGTEYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEQYAFR 1009

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  + A   V +  +  Y++  R                              D
Sbjct: 1010 AGTVGTVADRTAYGFV-KGYERDYNKFYR------------------------------D 1038

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---------- 555
              VDRL   +  + G+ R+   H  GIV+        +P Y DV    PV          
Sbjct: 1039 AEVDRL---AMGVAGVKRNTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAA 1087

Query: 556  ---TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K  D        +D   I  DD +   L 
Sbjct: 1088 WQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG-----IDPKDIRADDPDVMKLF 1141

Query: 613  --------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
                          T+ G LGI +  ++ +R  +E   P    +++ L  L       ++
Sbjct: 1142 SGTEVLGVTPEQIGTSTGVLGIPEFGTNFVRGMVEETHPTTFAELLQLSGLSHG---TDV 1198

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             + N +   KE I ++  +I         +++Y    +  A L    + +  + +R+ M 
Sbjct: 1199 WLGNAQDLIKEGIATLKTVIGC----RDDIMVY----LMHAGLDPKMAFTIMERVRKGMW 1250

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             KI EE   ++  +I    +N +         E   K   Y F K+HAAAY +++ + A+
Sbjct: 1251 LKISEE---ERNGYIQAMRENNVPDWY----IESCGKIK-YMFPKAHAAAYVMMALRVAY 1302

Query: 779  MKTHYPVEFLAASMTL 794
             K H+P+ +  A  ++
Sbjct: 1303 FKVHHPIYYYCAYFSI 1318


>gi|304439997|ref|ZP_07399890.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371489|gb|EFM25102.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 1403

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 177/892 (19%), Positives = 329/892 (36%), Gaps = 215/892 (24%)

Query: 102  LVSTAEGYQRLIELVSRM---YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +V T EG + L +LVS     Y   + K    I   + +     G+++ +G S G +  A
Sbjct: 584  IVQTQEGLKNLYKLVSASHMEYFNIEAKVPKTIFNKYRK-----GILLGSGTSKGELWNA 638

Query: 159  FFFNSSQVAEKRLLTFKKLF--------GDRL-YVNLQRHRGYDRYRESQVVQLAYTHEL 209
             +F       ++LL     +        G+ L YV  ++ +  +         LA   EL
Sbjct: 639  IYFGKPH---EKLLEIASYYDYLEIQPIGNNLNYVVSEKLKDKEDLININKKILALGDEL 695

Query: 210  --PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSD 266
              P+VAT +  +L    Y   D+   +  S V    +     P+  Y +   +M+  F  
Sbjct: 696  NKPVVATGDVYYL----YPHQDLSRRIVLSGVTGPVNPEVKIPNTLYFRTTDQMLDEFDY 751

Query: 267  LPEALE-----NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
            L +  E     N+ +IA     I  +     P +IE   + ++K   +  R  ++ G ++
Sbjct: 752  LGDRCEEVVITNSNKIADMVDDIKPLPDGTFPPYIEGSEEMLKKITFD--RAHSIYGEDL 809

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                         +   +RLD ELN I    ++  ++I    ++ +  +   VG  RGS 
Sbjct: 810  ------------PEIVEKRLDRELNSIIGNGYAVLYIIAEKLVKKSNSDGYLVG-SRGSV 856

Query: 382  AGSVTAYALTITDIDPL---------RFS------------------------------- 401
              S  A    IT+++PL         ++S                               
Sbjct: 857  GSSFAATMAGITEVNPLPPHYVCPKCKYSEFVDEKLVGSGVDLERKNCPVCGTELNRDGH 916

Query: 402  -LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL  +    PD D++F  + +    +Y +  +G   V +  T G++    A R 
Sbjct: 917  NIPFEVFLGFEGDKEPDIDLNFAGEYQPVAHKYTEELFGEGYVFRAGTIGTVAENTAYRI 976

Query: 461  VGRALQ---MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
            V    +   +P  ++DRL K                                       +
Sbjct: 977  VKNYYKDEIVPPVEIDRLAK---------------------------------------E 997

Query: 518  LEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDV---RSDLPVTQFNMKWIEKAGLIKFD 572
            + G+ R +  H  G++I  +  S     P+        S +  T F+  ++    ++K D
Sbjct: 998  ITGVKRTSGQHPGGVMIVPKTSSIYDFSPIQYPADKKSSGVITTHFDYNFLH-GKILKLD 1056

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTL 618
             LG    T+++   D    +   + L     DD  T  L  +               GTL
Sbjct: 1057 ILGHDGPTIIKMLEDLTGLKSEDIYL-----DDKRTMSLFNSSEELKMNKEIYECETGTL 1111

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            GI +  +  +++ L   +P    +++ +  L         V  NN ++          L+
Sbjct: 1112 GIPEFGTDFVKRMLIKTKPSTFSELVQISGLSHGTD----VWTNNAED----------LV 1157

Query: 679  DPMLKETQGVIIYQEQVM-QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            D  L + Q VI  +E +M  + Q  +   ++   + +   GK + +E  +  E+    + 
Sbjct: 1158 DQGLAKLQDVISTREDIMVYLIQAGAENKMAFFTMEKVRKGKGLTDEQREIMEKLPLPSW 1217

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
              G  + I             Y F K+HA AY ++S++ A+ K +YP+E+ A   T ++ 
Sbjct: 1218 YIGACEKIK------------YMFPKAHAVAYVMLSFRVAYYKLNYPLEYYATYFTNKLT 1265

Query: 798  NV-------------EKIKKFCQ-------DARQFNIQIMPPSVNTPCVDFK-------- 829
            +              EK+ +  Q       +  Q N   M   + +  ++FK        
Sbjct: 1266 DFDIETISKGVGAMKEKLNELLQIKNPSQKEKGQRNTLEMALEMYSRGIEFKFIDIYKSQ 1325

Query: 830  -----VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
                 + D  I     A+ G+G   A  I+E+S +  + S+EDF ++  + K
Sbjct: 1326 AKTFVIEDGAIRVPFMAVPGLGEAIANSIVESSKENKYISVEDFINKTGATK 1377


>gi|291558576|emb|CBL37376.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing
            bacterium SSC/2]
          Length = 1470

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 157/790 (19%), Positives = 285/790 (36%), Gaps = 172/790 (21%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++V L      P+VAT +  FL+ +D     +L+A         KD  +  P  Y +   
Sbjct: 745  KIVDLGEQFHKPVVATCDVHFLNPDDAIYRSILLAGK-----GFKDADQQAP-LYFRTTQ 798

Query: 259  EMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR---- 312
            EM+  F+ L   +A E  +    + + +++  +PI P     +C  +  + +  LR    
Sbjct: 799  EMLDEFAYLGSEKAKEVVITNTNKINDMIENISPIHP----DKCPPVIPDSDKTLREICY 854

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            N+A       L +   +          RL+ ELN I    ++  ++I    +  +  +  
Sbjct: 855  NRAHEIYGDDLPERVTS----------RLEKELNSIIGNGYAVMYIIAQKLVWDSNDHGY 904

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLL----------------------------- 403
             VG  RGS   S  A    IT+++PL    +                             
Sbjct: 905  LVG-SRGSVGSSFAATMSGITEVNPLPAHYICPECHFVDFDSEQVQKYAKMGMSGFDMPD 963

Query: 404  ------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                              FE FL       PD D++F  + + +   YV+  +G  +  +
Sbjct: 964  AYCPKCGAKMTKEGQDIPFETFLGFKGNKEPDIDLNFSGEYQGKAHAYVEVIFGKGKAFR 1023

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G+L  K A   V + L+       R C++                       RLA 
Sbjct: 1024 AGTIGTLAEKTAYGYVLKYLE-ERGISKRRCEI----------------------ERLA- 1059

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNM 560
                          G+ R    H  GI++   D+ +     +     D+ + +  T F  
Sbjct: 1060 ----------LGCTGVKRTTGQHPGGIIVVPHDKEIYDFTAVQHPANDMNTPIITTHFEY 1109

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
              I++  L+K D LG    +++++  D        +D   IP DD     L     TLGI
Sbjct: 1110 HSIDQ-NLLKLDILGHDDPSMIRRMEDITG-----IDAQTIPMDDKGVMGLFHGTETLGI 1163

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
               +  G      G+     + +I ++    P    ++V  +   +G           D 
Sbjct: 1164 TPEDIDGTPLGSLGVPEFGTDFVIQMLQDTHPQSFSDLVRISGLSHG----------TDV 1213

Query: 681  MLKETQGVIIYQEQVMQIAQLLSG----YSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
             L   Q +I   + V+  A         Y +++   L +    KI E + K K   ++  
Sbjct: 1214 WLGNAQTLIENGDAVISTAICCRDDIMVYLINQG--LEQEASFKIMEGVRKGKG--LTDE 1269

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL-- 794
             +  +      + +    K   Y F K+HAAAY +++++ AW K ++P+ + AA  ++  
Sbjct: 1270 QEQMMRDHNVPDWYIWSCKQIKYMFPKAHAAAYVMMAWRIAWYKVYHPLAYYAAYFSIRA 1329

Query: 795  ----------------------------EMDNVE----KIKKFCQDARQFNIQIMPPSV- 821
                                        E+ N +    +  K   +      +  P  + 
Sbjct: 1330 KAFSYEDMCLGKERLDEKMSIIKNTPKHEVKNADLDLLREMKIADEMYARGYEFWPLDIY 1389

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                 DF+V D +I  +L +I G+G   A+ + EA+  +PF SLE+F +R  + +     
Sbjct: 1390 KAKAKDFQVIDGKIMPALTSIDGMGEKAAQQVEEAAKGEPFTSLENFRNRTKAPQACIEK 1449

Query: 882  LESLVFAGAL 891
            ++ L   G L
Sbjct: 1450 MKELGIMGDL 1459


>gi|293364694|ref|ZP_06611411.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037]
 gi|307702942|ref|ZP_07639889.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            oralis ATCC 35037]
 gi|291316144|gb|EFE56580.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037]
 gi|307623335|gb|EFO02325.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            oralis ATCC 35037]
          Length = 1463

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 137/657 (20%), Positives = 246/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPNKDCPNCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNEIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ M  KI EE   +++ +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGMWLKISEE---ERDGYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|167766537|ref|ZP_02438590.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1]
 gi|167711660|gb|EDS22239.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1]
          Length = 1473

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 157/790 (19%), Positives = 285/790 (36%), Gaps = 172/790 (21%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++V L      P+VAT +  FL+ +D     +L+A         KD  +  P  Y +   
Sbjct: 748  KIVDLGEQFHKPVVATCDVHFLNPDDAIYRSILLAGK-----GFKDADQQAP-LYFRTTQ 801

Query: 259  EMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR---- 312
            EM+  F+ L   +A E  +    + + +++  +PI P     +C  +  + +  LR    
Sbjct: 802  EMLDEFAYLGSEKAKEVVITNTNKINDMIENISPIHP----DKCPPVIPDSDKTLREICY 857

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            N+A       L +   +          RL+ ELN I    ++  ++I    +  +  +  
Sbjct: 858  NRAHEIYGDDLPERVTS----------RLEKELNSIIGNGYAVMYIIAQKLVWDSNDHGY 907

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLL----------------------------- 403
             VG  RGS   S  A    IT+++PL    +                             
Sbjct: 908  LVG-SRGSVGSSFAATMSGITEVNPLPAHYICPECHFVDFDSEQVQKYAKMGMSGFDMPD 966

Query: 404  ------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                              FE FL       PD D++F  + + +   YV+  +G  +  +
Sbjct: 967  AYCPKCGAKMTKEGQDIPFETFLGFKGNKEPDIDLNFSGEYQGKAHAYVEVIFGKGKAFR 1026

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G+L  K A   V + L+       R C++                       RLA 
Sbjct: 1027 AGTIGTLAEKTAYGYVLKYLE-ERGISKRRCEI----------------------ERLA- 1062

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNM 560
                          G+ R    H  GI++   D+ +     +     D+ + +  T F  
Sbjct: 1063 ----------LGCTGVKRTTGQHPGGIIVVPHDKEIYDFTAVQHPANDMNTPIITTHFEY 1112

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
              I++  L+K D LG    +++++  D        +D   IP DD     L     TLGI
Sbjct: 1113 HSIDQ-NLLKLDILGHDDPSMIRRMEDITG-----IDAQTIPMDDKGVMGLFHGTETLGI 1166

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
               +  G      G+     + +I ++    P    ++V  +   +G           D 
Sbjct: 1167 TPEDIDGTPLGSLGVPEFGTDFVIQMLQDTHPQSFSDLVRISGLSHG----------TDV 1216

Query: 681  MLKETQGVIIYQEQVMQIAQLLSG----YSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
             L   Q +I   + V+  A         Y +++   L +    KI E + K K   ++  
Sbjct: 1217 WLGNAQTLIENGDAVISTAICCRDDIMVYLINQG--LEQEASFKIMEGVRKGKG--LTDE 1272

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL-- 794
             +  +      + +    K   Y F K+HAAAY +++++ AW K ++P+ + AA  ++  
Sbjct: 1273 QEQMMRDHNVPDWYIWSCKQIKYMFPKAHAAAYVMMAWRIAWYKVYHPLAYYAAYFSIRA 1332

Query: 795  ----------------------------EMDNVE----KIKKFCQDARQFNIQIMPPSV- 821
                                        E+ N +    +  K   +      +  P  + 
Sbjct: 1333 KAFSYEDMCLGKERLDEKMSIIKNTPKHEVKNADLDLLREMKIADEMYARGYEFWPLDIY 1392

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                 DF+V D +I  +L +I G+G   A+ + EA+  +PF SLE+F +R  + +     
Sbjct: 1393 KAKAKDFQVIDGKIMPALTSIDGMGEKAAQQVEEAAKGEPFTSLENFRNRTKAPQACIEK 1452

Query: 882  LESLVFAGAL 891
            ++ L   G L
Sbjct: 1453 MKELGIMGDL 1462


>gi|325697436|gb|EGD39322.1| DNA polymerase III PolC [Streptococcus sanguinis SK160]
          Length = 1462

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 111/513 (21%), Positives = 194/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 862  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 920

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 921  PHYVCGKCQYSEFITDGSYGSGFDMPDKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDI 980

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 981  DLNFSGEDQPSAHLDVRDIFGAEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1035

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1036 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1062

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1063 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1117

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+ Q E  G    + G+       +  
Sbjct: 1118 QDLSG-----IDPNDIPMDDAGVMALFSGTDILGVTQ-EQIGTPTGMLGIPEFGTNFVRG 1171

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---L 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M       L
Sbjct: 1172 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGL 1231

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I+   KN + +       E   K   Y F
Sbjct: 1232 DPKMAFTIMERVRKGLWLKISEE---ERNGYIAAMKKNNVPEWY----IESCGKIK-YMF 1283

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1284 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1316


>gi|78044072|ref|YP_360592.1| DNA polymerase III subunit alpha [Carboxydothermus hydrogenoformans
            Z-2901]
 gi|77996187|gb|ABB15086.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Carboxydothermus hydrogenoformans Z-2901]
          Length = 1407

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 190/905 (20%), Positives = 331/905 (36%), Gaps = 207/905 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            + +LV   EG   L  L++  +L     +  RI  S L     EGL++ T   +G +  A
Sbjct: 585  VSILVKNQEGLYNLYRLITLSHL-KYFHRHPRIPKSELMRY-REGLLIGTACEAGELFTA 642

Query: 159  FFFNSSQVAEKRLLTFKKLF---------GDRLYVNLQRHRGYDRYRE--SQVVQLAYTH 207
               N     E R+L   + +          +   +  QR +      E   +++ L    
Sbjct: 643  LLENQP---ESRILEIARFYDYFEIMPKGNNAFLLRNQRLKSEQELEELNRKIIALGEKL 699

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
              P+VAT +  FL  ED E +  ++           D   + P  YLK   EM+  F+ L
Sbjct: 700  NKPVVATGDVHFLEPED-EIYRRILQKGQGY-----DDAELQPPIYLKTTEEMLKEFAYL 753

Query: 268  PE--ALENTVEIARRCSFILQVHAPILPRFIEK--ECDDIQKEEENELRNKAVAGLEVRL 323
             +  A E  V+  R+ +  ++   PI   F     E  D Q  E    R   + G  +  
Sbjct: 754  GQEKAYEVVVDNPRKIAEQIEEIKPIPDEFYPPIIEGADRQIYEMTYQRAHELYGDPL-- 811

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                       +   +RL  EL+ I    F+  +LI    ++ +  +   VG  RGS   
Sbjct: 812  ----------PEIVEKRLKRELDAIINNGFAVLYLIAHKLVKKSLDDGYLVG-SRGSVGS 860

Query: 384  SVTAYALTITDIDPL---------RFS--------------------------------L 402
            S+ A    IT+++PL         R+S                                +
Sbjct: 861  SLVATMTMITEVNPLPPHYLCPNCRYSEFITDGSYGCGADMPDKNCPRCGTLLKKEGHDI 920

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE F+  +   +PD D++F  + +    +Y +  +G + V +  T  ++  K A   V 
Sbjct: 921  PFETFMGFEGDKVPDIDLNFSGEYQPRAHKYTEELFGKDYVFRAGTIATVADKTAFGFVK 980

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            +  +                                R AR A      +  ++  + G+ 
Sbjct: 981  KYFE-----------------------------ETGRPARQA-----WINWLTNGIVGVK 1006

Query: 523  RHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H  G+++   +  + +  P+     D  + +  T F+   I  + L+K D LG  
Sbjct: 1007 RTTGQHPGGLMVVPKNNDVHRFTPLQYPADDKSAGVVTTHFDYHSI-SSRLVKLDILGHD 1065

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGIFQL 623
              T+L+   D        +D   I  DD +T  +               TT GT GI + 
Sbjct: 1066 DPTVLKMLEDLTG-----IDPRTIRLDDRKTLGIFSSTEPLGVTPEQIRTTVGTYGIPEF 1120

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +RQ LE  +P    +++  +S +  G     V  NN ++          LI   + 
Sbjct: 1121 GTRFVRQMLEDTRPKSFTELVR-ISGFSHG---TDVWLNNAQD----------LIRAGIC 1166

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK---ERFISGASKNG 740
            +    I  ++ +M        Y L +    ++A   KI E + K K   E  I+   ++G
Sbjct: 1167 KLSDAISTRDDIMI-------YLLQKGVPPKKAF--KIMENVRKGKGISEEEIAVMKEHG 1217

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV- 799
            +      + F    +   Y F K+HA AY +++++ A+ K +YP  F A   T+  D+  
Sbjct: 1218 VP-----DWFIGSCQKIKYLFPKAHAVAYVMMAFRIAYFKVYYPEAFYATYFTVRADDFD 1272

Query: 800  --------EKIKKFCQDARQ------------------------FNIQIMPPSV-NTPCV 826
                    EKI K   +  Q                          I+++P  +  +   
Sbjct: 1273 LPVILAGPEKIWKTLDELEQRGGNLTAKEKGLVTVLEVALEMLARGIKMLPVDLEKSDAT 1332

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             F +    I     A+ G+G   A +I++A  +  F S+ED  +R    K  + V+E L 
Sbjct: 1333 RFLITPEGILPPFVALPGIGEAAAINIVKAREEGMFVSIEDLKTR---GKATKAVIEVLD 1389

Query: 887  FAGAL 891
              G L
Sbjct: 1390 AHGCL 1394


>gi|171778812|ref|ZP_02919874.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
 gi|171282458|gb|EDT47882.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
          Length = 1464

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 138/679 (20%), Positives = 247/679 (36%), Gaps = 189/679 (27%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVVSQKD-RPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  ED    ++++      A  +  +   +D +P   P  + +  +EM+ 
Sbjct: 735  PVLATGNVHYIEPEDEIYREIIVRSLGQGAPINRPIGRGEDAQPAPLPKAHFRTTNEMLD 794

Query: 263  IFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E       ++NT + A R   +  V   +   F+EK                  
Sbjct: 795  EFAFLGEDVAYEIVVKNTNDFADRFEEVEVVKKDLYTPFLEKS----------------- 837

Query: 317  AGLEVRLAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
               E R+A+    K +            +R++ EL  I    F+  +L     +  + K 
Sbjct: 838  ---EERVAEMTYQKAFEIYGNPLPDIVDRRIEKELTSILGNGFAVIYLASQMLVIRSNKR 894

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPL-------------------------------- 398
               VG  RGS   S  A  + IT+++P+                                
Sbjct: 895  GYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSKFITDGSVGSGYDLPDKDCP 953

Query: 399  ----RF-----SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                R+      + FE FL  D   +PD D++F  D +      V++ +G +   +  T 
Sbjct: 954  ECGTRYKKDGHDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEQYAFRAGTV 1013

Query: 450  GSLQAKAAL-------RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            G++  + A        RD G+    P ++V+RL                           
Sbjct: 1014 GTVADRTAYGFVKGYERDYGK--MYPEAEVERL--------------------------- 1044

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV------- 555
                        +Q   G+ R    H  GIV+        +P Y DV    PV       
Sbjct: 1045 ------------AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDL 1084

Query: 556  ------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
                  T FN   I++  ++K D LG    T+++K  D        +D   IP DD +  
Sbjct: 1085 SAEWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG-----IDPKDIPADDPDVM 1138

Query: 610  HLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             L               T  G LGI +  ++ +R  +E   P    +++ L  L      
Sbjct: 1139 ALFSGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVEETHPTTFAELLQLSGLSHG--- 1195

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             ++ + N +   KE I ++  +I         +++Y    +  A L    + +  + +R+
Sbjct: 1196 TDVWLGNAQDLIKEGIATLKTVIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRK 1247

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
             M  KI    D+++  +I    +N +         E   K   Y F K+HAAAY +++ +
Sbjct: 1248 GMWLKIS---DEERNGYIEAMRENNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALR 1299

Query: 776  TAWMKTHYPVEFLAASMTL 794
             A+ K HYP+ +  A  ++
Sbjct: 1300 VAYFKVHYPIYYYCAYFSI 1318


>gi|225871273|ref|YP_002747220.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047]
 gi|225700677|emb|CAW95265.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047]
          Length = 1465

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 142/676 (21%), Positives = 251/676 (37%), Gaps = 163/676 (24%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDH 252
            ++++    E P++AT N  ++  ED    D+++      A+ + T+   +  +P   P+ 
Sbjct: 726  LIEVGRRAEKPVLATGNVHYIEPEDAIYRDIIVRSLGQGALINRTIGRGEAAKPVPLPEA 785

Query: 253  YLKNRSEMVSIFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + +  +EM+  F+ L + L      +NT  +A R   +  V   +   +I+K        
Sbjct: 786  HFRTTNEMLDDFAFLGQDLAYEVVVQNTQALADRIEKVEVVKDDLYTPYIDKA------- 838

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                   + VA L  + A  AI           R++ EL  I    F+  +L     +  
Sbjct: 839  ------EETVAELTYQKA-FAIYGNPLPDIIDLRIEKELTSILGNGFAVIYLASQMLVNR 891

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------------- 398
            + +    VG  RGS   S  A  + IT+++P+                            
Sbjct: 892  SNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPSCQQSEFITDGSVGSGYDLPN 950

Query: 399  ----RFSLL---------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                R   L         FE FL  D   +PD D++F  D +      V++ +G E   +
Sbjct: 951  KACPRCGTLYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPNAHLDVRDIFGEEYAFR 1010

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V +  +  Y       K  P                        D
Sbjct: 1011 AGTVGTVAEKTAYGFV-KGYERDYG------KFYP------------------------D 1039

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---------- 555
              VDRL   +    G+ R    H  GIV+        +P Y DV    PV          
Sbjct: 1040 AEVDRL---AAGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQFPADDVTAS 1088

Query: 556  ---TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K  D        +D   IP DD +   L 
Sbjct: 1089 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPITIPADDPDVMALF 1142

Query: 613  --------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
                          T  G LGI +  ++ +R  +    P    +++ L  L       ++
Sbjct: 1143 SGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHG---TDV 1199

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             + N +   KE I ++  +I         +++Y    +  A L    + +  + +R+ + 
Sbjct: 1200 WLGNAQDLIKEGIATLKTVIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRKGLW 1251

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             KI EE   ++  +I    +N +         E   K   Y F K+HAAAY +++ + A+
Sbjct: 1252 LKISEE---ERSSYIKAMRQNNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAY 1303

Query: 779  MKTHYPVEFLAASMTL 794
             K H+P+ +  A  ++
Sbjct: 1304 FKVHHPIMYYCAYFSI 1319


>gi|58337539|ref|YP_194124.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227904180|ref|ZP_04021985.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC 4796]
 gi|58254856|gb|AAV43093.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227868199|gb|EEJ75620.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC 4796]
          Length = 1437

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 112/504 (22%), Positives = 198/504 (39%), Gaps = 97/504 (19%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKN 256
            S + +L      P+VAT ++ ++     E HD +   +  S   S  +R +  PD +  +
Sbjct: 717  SNIYKLGKELNKPVVATGDAHYV-----EPHDAIYRTILISAQRSNPNRNKPQPDLHFYS 771

Query: 257  RSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK---EE 307
              EM+  FS L E       +ENT +IA   S I  +   + P  IE   ++++K   ++
Sbjct: 772  TQEMLDAFSFLGEDIAKEIVIENTNKIADEISEIQPIKEGLYPPHIEHADEEMKKLTYDK 831

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL    +  +                  + R+D ELN I    ++  +LI    +  +
Sbjct: 832  AYELYGNPLPKI-----------------VKDRIDLELNSIISNGYAVIYLISQRLVAKS 874

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDF 418
             K+   VG  RGS   S+ A    IT+++PL         ++S  FE         +PD 
Sbjct: 875  NKDGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFENGEYGSGFDLPDK 933

Query: 419  DIDFC-----QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            D   C     +D +D         +G ++V  I    S   +    +  R +        
Sbjct: 934  DCPECGTPLVKDGQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM-------- 984

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRF---------REARLADPSVDRLLEISQKLEGLYRH 524
                  P++     ++  +AD + +         R+ +L +  +DRL   +  + G+ R 
Sbjct: 985  ----FGPDNSYRAGTIATVADKTAYGYAKHFDEERDLKLRNAELDRL---ASGVRGVKRT 1037

Query: 525  ASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H AGIV+   D  +    P+     DV +   +T ++   I    ++KFD LG    
Sbjct: 1038 TGQHPAGIVVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDP 1096

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT-TK-------------GTLGIFQLES 625
            T+++   D        +D   IP DD     L + TK             GTLG+ +  +
Sbjct: 1097 TMIRHLQDLSG-----IDPLTIPPDDPGVMSLFSGTKALGVTPEQIGSKTGTLGVPEFGT 1151

Query: 626  SGMRQALEGMQPDCIEDIIALVSL 649
              +R  LE  +P    +++ +  L
Sbjct: 1152 RFVRGMLEETKPTTFSELLQISGL 1175


>gi|313608987|gb|EFR84729.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            monocytogenes FSL F2-208]
          Length = 1447

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 193/934 (20%), Positives = 332/934 (35%), Gaps = 213/934 (22%)

Query: 76   DIDMQDNLK-MTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            DID  D+L     +G       P    +   TA G + L +L++ M  ++   +  RI  
Sbjct: 599  DIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT-MSNINYFYRVPRIPR 657

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLFGDRLYVNL 186
            S L+++  EGLI+ T  S G +  A      Q AEK    +       K ++   +   L
Sbjct: 658  SQLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIEREL 716

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R           +V++      P+VAT N  +    D     +L+   HS   +     
Sbjct: 717  VRDETALEEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILI---HSQGGANPLNR 773

Query: 247  RVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               PD + +   EM+  F+ L E  A E  V  +      ++   PI       + D   
Sbjct: 774  AELPDVHFRTTDEMLKEFAFLGEEKAKEIVVTNSNLVVDWMEDLKPIKDELYTPKIDGA- 832

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               E+E+RN     +   +A     +    +    RL+ EL  I    F+  +LI    +
Sbjct: 833  ---EDEVRN-----MSYEMAHQLYGENL-PEIVEARLEKELKSIIGHGFAVIYLISHKLV 883

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL--------------------- 403
            + +  +   VG  RGS   S  A    IT+++PL    L                     
Sbjct: 884  KKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDL 942

Query: 404  --------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                                FE FL      +PD D++F  D +     Y +  +G + V
Sbjct: 943  PDKDCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYV 1002

Query: 444  AQIITFGSLQAKAA---LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
             +  T G++  K A   +R+  R + M                                 
Sbjct: 1003 FRAGTIGTVAEKTAFGYVRNYERDMNM--------------------------------- 1029

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----- 555
              +    +DRL+       G+ R    H  GI++        +P Y DV    PV     
Sbjct: 1030 -TIRGAEIDRLV---AGCTGVKRTTGQHPGGIIV--------IPDYMDVYDFTPVQFPAD 1077

Query: 556  --------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                    T F+   I    ++K D LG    T ++   D        +D   IP DD +
Sbjct: 1078 ATDSEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPD 1131

Query: 608  TYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
               L               +  GTLGI +  +  +RQ LE  +P    +++ +  L    
Sbjct: 1132 VMKLFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG- 1190

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               ++ + N  +  K K   + P +     +    +IYQ        L S  +    + +
Sbjct: 1191 --TDVWLGNAEELIKNKTCEL-PDVIGCRDDIMVFLIYQ-------GLESSLAFKIMESV 1240

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+  GK + +EM++             ++  + +   E   K   Y F K+HAAAY +++
Sbjct: 1241 RK--GKGLTDEMEEAM-----------MANKVPLWYIESCKKIK-YMFPKAHAAAYVLMA 1286

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQD---------------- 808
             + A+ K H+P+ F A   T+  D+          E +K   ++                
Sbjct: 1287 VRIAYFKVHHPLFFYATYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLL 1346

Query: 809  ----------ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                      AR F+ Q +     +   +F +  + +     AI  +GT  A+ I+ A  
Sbjct: 1347 TVLEIANEMLARGFHFQKV-DLYKSSADEFLIDGDSLIPPFNAIPSLGTNVAKQIVAARE 1405

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +  F S ED   R    K+++ +++ +   G L+
Sbjct: 1406 NGEFLSKEDLQQR---GKVSKTIIQYMDDQGCLE 1436


>gi|225858122|ref|YP_002739632.1| DNA polymerase III PolC [Streptococcus pneumoniae 70585]
 gi|225720766|gb|ACO16620.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae 70585]
          Length = 1463

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 138/667 (20%), Positives = 249/667 (37%), Gaps = 165/667 (24%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPHKDCPNCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------- 612
             I++  ++K D LG    T+++K  D        +D + IP DD     L          
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNKIPMDDEGVMALFSGTDVLGVT 1149

Query: 613  -----TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
                 T  G LGI +  ++ +R  ++   P    +++ L  L       ++ + N +   
Sbjct: 1150 PEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHG---TDVWLGNAQDLI 1206

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K+ IV +  +I         +++Y    +  A L    + +  + +R+ +  KI EE   
Sbjct: 1207 KQGIVDLSTVIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRKGLWLKISEE--- 1255

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  +I     N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +
Sbjct: 1256 ERNGYIEAMKANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYY 1310

Query: 788  LAASMTL 794
              A  ++
Sbjct: 1311 YCAYFSI 1317


>gi|302024523|ref|ZP_07249734.1| DNA polymerase III PolC [Streptococcus suis 05HAS68]
          Length = 1463

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 157/783 (20%), Positives = 281/783 (35%), Gaps = 185/783 (23%)

Query: 199  QVVQLAYTHELPLVATNNSLFLS-EEDYEAHDVLMAVAHSTVVS------QKDRPRVTPD 251
            Q++++     LP++AT N  ++  EE+     ++ A+     ++      +  +P   P 
Sbjct: 723  QLIEVGRRAGLPVLATGNVHYIDPEEEIYREIIVRALGQGAPINWTIGNGENAQPAPLPK 782

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             + +  SEM+  F+ L E+L   + I    +        +L RF     +D+Q  +  +L
Sbjct: 783  AHFRTTSEMLDEFAFLGESLAREIVITNPNA--------MLDRF-----EDVQVVK-TDL 828

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                +   E  +A+    K +             R++ EL  I    F+  +L     + 
Sbjct: 829  YTPYIEKAEETVAELTYQKAFEIYGNPLPDIIDLRIEKELTSILGNGFAVIYLASQMLVH 888

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------RFSLL 403
             + +    VG  RGS   S  A  + IT+++P+                       F L 
Sbjct: 889  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSYGSGFDLP 947

Query: 404  -------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                               FE FL  D   +PD D++F  D +      V++ +G E   
Sbjct: 948  DKDCEKCGTKYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEENAF 1007

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V R  +  Y +  R                              
Sbjct: 1008 RAGTVGTVAAKTAYGFV-RGYERDYGKFYR------------------------------ 1036

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV--------- 555
            D  V+RL   +    G+ R    H  GI++         P Y DV    PV         
Sbjct: 1037 DVEVERL---AAGAAGVKRTTGQHPGGIIV--------FPDYMDVYDFTPVQYPADDVTA 1085

Query: 556  ----TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
                T FN   I++  ++K D LG    T+++K  D        +D   IP DD     L
Sbjct: 1086 SWQTTHFNFHDIDE-NVLKLDILGHDDPTMVRKLQDLSG-----IDPQTIPADDKGVMAL 1139

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
             +    LG+   E  G+   + G+       +  +V   +P     ++  +   +G +  
Sbjct: 1140 FSGTEILGVIP-EQIGIPTGMLGIPEFGTNFVRGMVEETKPTTFSELLQLSGLSHGTDVW 1198

Query: 672  V-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            + +   LI   +     VI  ++ +M     A L    + +  + +R+ +  KI EE   
Sbjct: 1199 LGNAQDLIKAGIANLSTVIGCRDDIMVYLMHAGLPPKMAFNIMERVRKGLWLKISEE--- 1255

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  +I     N +         E   K   Y F K+HAAAY +++ + A+ K H+P+ +
Sbjct: 1256 ERNGYIQAMKDNKVPDWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPLYY 1310

Query: 788  LAASMTL-------------------------------EMDNVEK--------IKKFCQD 808
              A  ++                               E  NVE+        + +  + 
Sbjct: 1311 YCAYFSIRAKAFDLATMSGGLERVKAKMEEIALKKKNNEASNVEQDLYTTLELVNEMLER 1370

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
              +F    +  S  T   DF + DN +     A+ G+G   A+ ++ A A+  F S  + 
Sbjct: 1371 GFKFGKLDLYKSHAT---DFLIEDNTLIPPFVAMDGLGENVAKQVVAARAEGEFLSKTEL 1427

Query: 869  CSR 871
              R
Sbjct: 1428 RKR 1430


>gi|313905074|ref|ZP_07838444.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
 gi|313470144|gb|EFR65476.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
          Length = 1536

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 181/933 (19%), Positives = 331/933 (35%), Gaps = 211/933 (22%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            LD+D  +     NQ          +++L    EG   L   VS  +L    +Q+ ++  S
Sbjct: 670  LDLDALNKEGSVNQNAIRKMKSHHVIILAKNEEGRVNLYRCVSESHLKYFNRQA-KLPRS 728

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQR 188
            +++E   EGLI+ +   +G + +A    +      R++ F      + L  +   +  ++
Sbjct: 729  FIEE-HREGLIIGSACVAGELYQALLRGAPDAEIARIVNFYDYLEIQPLGNNAFLIEDEK 787

Query: 189  HRGYDRYRESQ-----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +       + Q     +V+L      P+VAT +  F+  ED     ++MA       + K
Sbjct: 788  NPAVTCMEDLQEINRKIVKLGEQFHKPVVATCDVHFMDPEDEIYRRIIMA-GKKFADADK 846

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P      +L+   EM++ F  L   +A E  +E  ++ + +++  +PI P    K+C 
Sbjct: 847  QEPL-----FLRTTEEMLAEFEYLGSEKAREVVIENTQKIADMVEKISPIYP----KKCP 897

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             +  + +  LR      +  R A          ++   RL+ EL  I    ++  ++I  
Sbjct: 898  PVIPKSDEMLRT-----ICERKAHEIYGPDL-PEEVSARLERELTSIISNGYAVMYIIAQ 951

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------- 398
              +    ++   VG  RGS   S  A    IT+++PL                       
Sbjct: 952  KLVWKCNEDGYLVG-SRGSVGSSFAATMSGITEVNPLPPHYLCHHDYHVEFNTPDVEKYR 1010

Query: 399  ------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                     F++ FE FL       PD D++F  + + +   Y 
Sbjct: 1011 KMGYSGCDMPDKECPVCGKLMDKIGFNIPFETFLGFAGNKEPDIDLNFSGEYQTKAHAYT 1070

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSL 489
               +G  +  +  T G+L  K A   V      R +     ++DR+ K            
Sbjct: 1071 SVIFGDGQTFKAGTIGTLADKTAFGFVKNYYEERGIHKRTCEIDRIVK------------ 1118

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR 547
                                          G+ R    H  GI++      ++ + P+  
Sbjct: 1119 ---------------------------GCVGIRRTTGQHPGGIIVLPVGMDINTITPVQH 1151

Query: 548  ---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
               D  SD+  T F+   I+ + L+K D LG    T+++   D   +     D + IP D
Sbjct: 1152 PADDPNSDIISTHFDYHSID-SNLLKLDILGHDDPTMIRMLEDLTGE-----DATKIPLD 1205

Query: 605  DHETYHLLTTK---------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            + +   L                   GTLGI +  +S   Q L   +P    D+  +  L
Sbjct: 1206 EPKVMSLFQNLSALNLQPSDIRGIKLGTLGIPEFGTSFAMQMLFDTKPQNFTDLCRISGL 1265

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
                   ++ + N     KE             K T G  I     + +  +  G    E
Sbjct: 1266 SHG---TDVYLGNAETLIKEG------------KCTLGTAICCRDDIMVYLINRGMDSEE 1310

Query: 710  A-DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            +  ++ +     I + + K+   +I    ++G+      + +    +   Y F K HA A
Sbjct: 1311 SFSIMEKVRKGIIAKGVCKEWPDWIKDMKEHGVP-----DWYIWSCEKIKYMFPKGHAVA 1365

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP--------- 819
            Y +++Y+  W K + P+ + AA  ++        +K CQ  RQ   QIM           
Sbjct: 1366 YVMMAYRVGWFKVYKPLAYYAAFFSIRAKAF-SYEKMCQ-GRQHLEQIMDEYNSRKDQLS 1423

Query: 820  -----SVNTPCV----------------------DFKVGDNRIYYSLAAIKGVGTTTARH 852
                      C+                       F++ D ++  SL AI G+G+  A  
Sbjct: 1424 KMEQDQYTDMCLVEEMYARGLEFMPIDIYRVQPHRFQIIDGKLMPSLDAIDGLGSVAADS 1483

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            I  A+ D  F S +D   R    K+ + + ++L
Sbjct: 1484 ICLAARDGKFLSKDDLRQR---GKVGKSITDTL 1513


>gi|306824435|ref|ZP_07457781.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str.
            73H25AP]
 gi|304433222|gb|EFM36192.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str.
            73H25AP]
          Length = 1463

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 111/513 (21%), Positives = 192/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 863  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 921

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 922  PHYVCGQCQYSEFITDGSYGSGFDMPNKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDI 981

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 982  DLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1036

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1037 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1063

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1064 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1118

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+   E  G    + G+       +  
Sbjct: 1119 QDLSG-----IDPNEIPMDDEGVMALFSGTDVLGV-TPEQIGTPTGMLGIPEFGTNFVRG 1172

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQL 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M     A L
Sbjct: 1173 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGL 1232

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ M  KI EE   ++  +I     N + +       E   K   Y F
Sbjct: 1233 EPKMAFTIMERVRKGMWLKISEE---ERNGYIEAMKANKVPEWY----IESCGKIK-YMF 1284

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1285 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|42560899|ref|NP_975350.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
            SC str. PG1]
 gi|42492396|emb|CAE76992.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
            SC str. PG1]
 gi|301320644|gb|ADK69287.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            mycoides subsp. mycoides SC str. Gladysdale]
          Length = 1482

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 108/522 (20%), Positives = 191/522 (36%), Gaps = 126/522 (24%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             +RL+ EL  I +  F+  + I    ++ +  +   VG  RGS   S  A    IT+++P
Sbjct: 879  EKRLEKELGSITKHGFAIVYWISHLLVKQSLDDGYLVG-SRGSVGSSFVATMAQITEVNP 937

Query: 398  LR-----------------------------------------FSLLFERFLNPDRMSMP 416
            L+                                           + FE FL  +   +P
Sbjct: 938  LKAHYRCLNCKYSDFNTDPAYKCGYDLPEKNCPNCNQKLIGDGHDIPFETFLGFNGDKVP 997

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D++F  + +++   + +  +G   V +  T  ++  K A   V    +          
Sbjct: 998  DIDLNFSGEYQNQAHNFTKKMFGENNVFRAGTISTVAEKTAFGYVKTYFE---------- 1047

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPS-VDRLLEISQKLEGLYRHASTHAAGIVI- 534
                                  R+A L   + ++RL +++Q   G+ R    H  GI+I 
Sbjct: 1048 -------------------ETKRDASLPRKTEINRLAKLAQ---GVKRTTGQHPGGIIIL 1085

Query: 535  -GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
              +  +    P+     D+ S    T F+   I    L+K D LG    T L+   D   
Sbjct: 1086 PNEYEIEDFTPVNYPADDLNSTWKTTHFDFHSIHD-NLLKMDILGHDDPTALKMLRDL-- 1142

Query: 591  QRGVKVDLSLIPFDDHETYHLLTT---------------KGTLGIFQLESSGMRQALEGM 635
                 +D   IP DD   Y L ++                G +GI +  +  +R  L+  
Sbjct: 1143 ---TNIDPITIPTDDKNVYSLFSSLQALNLTSDKINDEITGAIGIPEFGTGFVRNMLKET 1199

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            QP    D++ +  L       ++ + N R   K+K   I  +I         +++Y   +
Sbjct: 1200 QPKTFADLVQISGLSHGT---DVWLGNARDLIKDKKADISTVIGC----RDDIMVY---L 1249

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            + +  L S  +    + +R+  G K KE +D  K+  +     +   K            
Sbjct: 1250 INMG-LESSLAFMIMESVRKGKGLK-KEWIDVMKQYNVPDWYIDSCLKI----------- 1296

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
               Y F K+HA AY +++Y+ AW K +YP E+ A  +T   D
Sbjct: 1297 --KYMFPKAHATAYVLMAYRIAWYKIYYPTEYYATYLTTRAD 1336


>gi|313665237|ref|YP_004047108.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            leachii PG50]
 gi|312949309|gb|ADR23905.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            leachii PG50]
          Length = 1480

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 148/751 (19%), Positives = 271/751 (36%), Gaps = 184/751 (24%)

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            PD YL+  +EM+  FS L +  EN +        I+ +++  +   I+     I+    +
Sbjct: 795  PDQYLRTTNEMLEEFSWLED--ENLI------YEIVVINSNKINEMIDINVIPIK----D 842

Query: 310  ELRNKAVAGLEVRLAQGA--IAKGYHAQDY----RQRLDFELNVIARMKFSGYFLIVADF 363
             L    +A +  +L       AK  + ++      +RL+ EL  I +  F+  + I    
Sbjct: 843  GLFTPKIANVNEKLKDKCYQTAKQMYGENLPDIVEKRLEKELGSITKHGFAIVYWISHLL 902

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------ 399
            ++ +  +   VG  RGS   S  A    IT+++PL+                        
Sbjct: 903  VKQSYDDGYLVG-SRGSVGSSFVATMAQITEVNPLKAHYRCLNCKYSDFDTDPTYKCGYD 961

Query: 400  -----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                               + FE FL  D   +PD D++F  + +++   + +  +G   
Sbjct: 962  LPTKNCPNCNQKLIGDGHDIPFETFLGFDGDKVPDIDLNFSGEYQNQAHNFTKKMFGENN 1021

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            V +  T  ++  K A   V    +                       +   D +  R+  
Sbjct: 1022 VFRAGTISTVAEKTAFGYVKTYFE-----------------------ETKKDTNLPRKTE 1058

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQ 557
                 ++RL +++Q   G+ R    H  GI+I   +  +    P+     D+ S    T 
Sbjct: 1059 -----INRLAKLAQ---GVKRTTGQHPGGIIILPNEYEIEDFTPVNYPADDLSSTWKTTH 1110

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--- 614
            F+   I    L+K D LG    T L+   D        +D   IP DD   Y L ++   
Sbjct: 1111 FDFHSIHD-NLLKMDILGHDDPTALRMLRDL-----TNIDPITIPTDDKNVYSLFSSLQA 1164

Query: 615  ------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                         G +GI +  +  +R  L   +P    D++ +  L       ++ + N
Sbjct: 1165 LNLTSDKINDEITGAIGIPEFGTGFVRNMLRETKPKTFADLVQISGLSHGT---DVWLGN 1221

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R   K+   +I  +I         +++Y   ++ I  L S  +    + +R+  G K K
Sbjct: 1222 ARDLIKDNKANISTVIGCR----DDIMVY---LINIG-LESSLAFMIMESVRKGKGLK-K 1272

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E +D  K+  I     +   K               Y F K+HA AY +++Y+ AW K +
Sbjct: 1273 EWIDIMKKHNIPDWYIDSCLKI-------------KYMFPKAHATAYVLMAYRIAWYKIY 1319

Query: 783  YPVEFLAASMTLEMD--------------------------NVEKIKKFCQDAR---QFN 813
            YP E+ A  ++ + D                          N EK+ K  +D     +  
Sbjct: 1320 YPTEYYATYLSTKADVFDLKTALGGYESVLLKLKSQQQKVKNGEKLSKKEEDLEVVYEVL 1379

Query: 814  IQIMPPSVNTPCVDFK-----------VGDNR--IYYSLAAIKGVGTTTARHIMEASADK 860
            +++   ++    +DF+           + DN   I      I  +G   A  I+ A   K
Sbjct: 1380 LEMFARNIKFSNIDFEKSEATKFKVDVLNDNTKIIIPPFNVIDSLGEAVALSIINARNTK 1439

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            P  S+ D  +R  + +   ++ E      +L
Sbjct: 1440 PITSVNDLKNRTQTTQTQIKIFEEFNILDSL 1470


>gi|290579638|ref|YP_003484030.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025]
 gi|254996537|dbj|BAH87138.1| DNA polymerase III alpha subunit [Streptococcus mutans NN2025]
          Length = 1470

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 93/408 (22%), Positives = 158/408 (38%), Gaps = 74/408 (18%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  + A   V +
Sbjct: 974  FETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEEYAFRAGTVGTVADRTAYGFV-K 1032

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +  Y +  R                              D  VDRL   +Q   G+ R
Sbjct: 1033 GYERDYGKFYR------------------------------DAEVDRL---AQGSAGVKR 1059

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 1060 TTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDLTAEWQTTHFNFHDIDE-NVLK 1110

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
             D LG    T+++K  D        +D   IP DD E   L +    LG+ + E  G   
Sbjct: 1111 LDVLGHDDPTMIRKLQDLSG-----IDPKTIPADDPEVMKLFSGTEVLGVTE-EEIGTPT 1164

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVI 689
             + G+       +  +V    P     ++  +   +G +  + +   LI   +     VI
Sbjct: 1165 GMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIATLSTVI 1224

Query: 690  IYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
              ++ +M     A L    + +  + +R+    KI EE   ++  +IS   +N +     
Sbjct: 1225 GCRDDIMVYLMHAGLEPKMAFTIMERVRKGAWLKISEE---ERNGYISAMRENNVPDWY- 1280

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
                E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1281 ---IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHHPIYYYCAYFSI 1324


>gi|217964533|ref|YP_002350211.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            monocytogenes HCC23]
 gi|217333803|gb|ACK39597.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            monocytogenes HCC23]
 gi|307570901|emb|CAR84080.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
            monocytogenes L99]
          Length = 1443

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 194/934 (20%), Positives = 332/934 (35%), Gaps = 213/934 (22%)

Query: 76   DIDMQDNLK-MTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            DID  D+L     +G       P    +   TA G + L +L++ M  ++   +  RI  
Sbjct: 595  DIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT-MSNINYFYRVPRIPR 653

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTF-----KKLFGDRLYVNL 186
            S L+++  EGLI+ T  S G +  A      Q AEK      F     K ++   +   L
Sbjct: 654  SQLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIEREL 712

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R           +V++      P+VAT N  +    D     +L+   HS   +     
Sbjct: 713  VRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILI---HSQGGANPLNR 769

Query: 247  RVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               PD + +   EM+  F+ L E  A E  V  +      ++   PI       + D   
Sbjct: 770  AELPDVHFRTTDEMLKEFAFLGEEKAKEIVVTNSNLVVDWMEDLKPIKDELYTPKIDGA- 828

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               E+E+RN     +   +A     +    +    RL+ EL  I    F+  +LI    +
Sbjct: 829  ---EDEVRN-----MSYEMAHQLYGENL-PEIVEARLEKELKSIIGHGFAVIYLISHKLV 879

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL--------------------- 403
            + +  +   VG  RGS   S  A    IT+++PL    L                     
Sbjct: 880  KKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDL 938

Query: 404  --------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                                FE FL      +PD D++F  D +     Y +  +G + V
Sbjct: 939  PDKDCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYV 998

Query: 444  AQIITFGSLQAKAA---LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
             +  T G++  K A   +R+  R + M                                 
Sbjct: 999  FRAGTIGTVAEKTAFGYVRNYERDMNM--------------------------------- 1025

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----- 555
              +    +DRL+       G+ R    H  GI++        +P Y DV    PV     
Sbjct: 1026 -TIRGAEIDRLV---AGCTGVKRTTGQHPGGIIV--------IPDYMDVYDFTPVQFPAD 1073

Query: 556  --------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                    T F+   I    ++K D LG    T ++   D        +D   IP DD +
Sbjct: 1074 ATDSEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPD 1127

Query: 608  TYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
               L               +  GTLGI +  +  +RQ LE  +P    +++ +  L    
Sbjct: 1128 VMKLFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG- 1186

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               ++ + N  +  K K   + P +     +    +IYQ        L S  +    + +
Sbjct: 1187 --TDVWLGNAEELIKNKTCEL-PDVIGCRDDIMVFLIYQ-------GLESSLAFKIMESV 1236

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+  GK + +EM++             ++  + +   E   K   Y F K+HAAAY +++
Sbjct: 1237 RK--GKGLTDEMEEAM-----------MANKVPLWYIESCKKIK-YMFPKAHAAAYVLMA 1282

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQD---------------- 808
             + A+ K H+P+ F A   T+  D+          E +K   ++                
Sbjct: 1283 VRIAYFKVHHPLFFYATYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLL 1342

Query: 809  ----------ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                      AR F+ Q +     +   +F +  + +     AI  +GT  A+ I+ A  
Sbjct: 1343 TVLEIANEMLARGFHFQKV-DLYKSSADEFLIDGDSLIPPFNAIPSLGTNVAKQIVAARE 1401

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +  F S ED   R    K+++ +++ +   G L+
Sbjct: 1402 NGEFLSKEDLQQR---GKVSKTIIQYMDDQGCLE 1432


>gi|24378642|ref|NP_720597.1| DNA polymerase III PolC [Streptococcus mutans UA159]
 gi|32469722|sp|Q8DWE0|DPO3_STRMU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|24376501|gb|AAN57903.1|AE014864_1 DNA polymerase III, alpha subunit [Streptococcus mutans UA159]
          Length = 1465

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 93/408 (22%), Positives = 158/408 (38%), Gaps = 74/408 (18%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  + A   V +
Sbjct: 969  FETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEEYAFRAGTVGTVADRTAYGFV-K 1027

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +  Y +  R                              D  VDRL   +Q   G+ R
Sbjct: 1028 GYERDYGKFYR------------------------------DAEVDRL---AQGSAGVKR 1054

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 1055 TTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDLTAEWQTTHFNFHDIDE-NVLK 1105

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
             D LG    T+++K  D        +D   IP DD E   L +    LG+ + E  G   
Sbjct: 1106 LDVLGHDDPTMIRKLQDLSG-----IDPKTIPADDPEVMKLFSGTEVLGVTE-EEIGTPT 1159

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVI 689
             + G+       +  +V    P     ++  +   +G +  + +   LI   +     VI
Sbjct: 1160 GMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIATLSTVI 1219

Query: 690  IYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
              ++ +M     A L    + +  + +R+    KI EE   ++  +IS   +N +     
Sbjct: 1220 GCRDDIMVYLMHAGLEPKMAFTIMERVRKGAWLKISEE---ERNGYISAMRENNVPDWY- 1275

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
                E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1276 ---IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHHPIYYYCAYFSI 1319


>gi|5912334|emb|CAB56077.1| DNA polymerase III alpha subunit [Rickettsia helvetica]
          Length = 357

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 100/204 (49%), Gaps = 13/204 (6%)

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I ++L AIKGV     + +  E  A  PF S+ DF  R+  K +N ++LE+L+ +G  D 
Sbjct: 42   IIFALGAIKGVTPNFGKLVTDERKARGPFKSITDFIERLPPKSINSKLLENLIKSGCFDE 101

Query: 894  FGYSRMQLLQSLDNIQKYA-QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
               +R+QL  S+  +  Y+  + E+  +N+   I   +  + S  I +     + +++ F
Sbjct: 102  LHDNRLQLFSSIPKLLSYSTSYHEEQESNQLSLI---KVSSLSPTILVSSDYADKNTLAF 158

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTR 1010
              E   +G + S HPL  Y+ I  ++ I    +    +    N + LA ++   Q+K +R
Sbjct: 159  Y-EFEAMGLFISNHPLTQYQEIFSRLNILNTADLYNNLPEGTNRVNLAGVI---QKKDSR 214

Query: 1011 KGSRIGWVT--FSEPAKEYEANFF 1032
              +R  +VT   S+P   +E + F
Sbjct: 215  MSARGRFVTLVLSDPENIFELSIF 238


>gi|218508746|ref|ZP_03506624.1| DNA polymerase III protein, alpha subunit [Rhizobium etli Brasil 5]
          Length = 393

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 118/279 (42%), Gaps = 37/279 (13%)

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            +YGF +SHAA++A++ Y ++W+K +YP  F AA +  +        +  +DAR+  ++I+
Sbjct: 1    EYGFPESHAASFALLVYASSWLKAYYPDVFCAAMLNSQPMGFYAPAQLVRDAREHGVRIL 60

Query: 818  PPSVNTP--------------CVDFKVGDNR--------IYYSLAAIKGVGTTTARHIME 855
               +N                 VDF+ G  R        +      IKG+ +   + ++ 
Sbjct: 61   AVDINESEWDCTLEEAVFDRKTVDFRHGQMREIIKTRHAVRLGFRQIKGLSSDDMKRLV- 119

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD--NIQKYAQ 913
             +  + + S+ D   R     L + V+E L  A A      SR + L ++   +++  A+
Sbjct: 120  GNRGQGYGSVRDLWLR---SGLPKSVIERLADADAFRSIHLSRREALWAVRALDVKSAAE 176

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
             +      +H ++         D +  E+            + R L      HP+   + 
Sbjct: 177  ELPLFEQVRHIDLQPEPAAKLPDMLPGEQVI---------EDYRYLSLSLKAHPVSFLRE 227

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             LRK GI    + ++   G  + +A +V+ +Q+  + KG
Sbjct: 228  ELRKAGITRNVDLLSVPNGKRVTIAGLVLVRQRPGSAKG 266


>gi|327472427|gb|EGF17858.1| DNA polymerase III PolC [Streptococcus sanguinis SK408]
          Length = 1462

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 195/513 (38%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL+ I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 862  RIEKELSSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 920

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 921  PHYVCGKCQYSEFITDGSYGSGFDMPDKDCPECGRKLSKNGQDIPFETFLGFDGDKVPDI 980

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 981  DLNFSGEDQPSAHLDVRDIFGAEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1035

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1036 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1062

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1063 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1117

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+ Q E  G    + G+       +  
Sbjct: 1118 QDLSG-----IDPNDIPMDDAGVMALFSGTDILGVTQ-EQIGTPTGMLGIPEFGTNFVRG 1171

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---L 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M       L
Sbjct: 1172 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGL 1231

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I+   +N + +       E   K   Y F
Sbjct: 1232 EPKMAFTIMERVRKGLWLKISEE---ERNGYIAAMKENNVPEWY----IESCGKIK-YMF 1283

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1284 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1316


>gi|148983680|ref|ZP_01816999.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP3-BS71]
 gi|147923827|gb|EDK74939.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP3-BS71]
 gi|301799415|emb|CBW31952.1| DNA polymerase III PolC-type [Streptococcus pneumoniae OXC141]
          Length = 1463

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPHKDCPNCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNKIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNDYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|83319984|ref|YP_424323.1| DNA polymerase III, alpha subunit [Mycoplasma capricolum subsp.
            capricolum ATCC 27343]
 gi|83283870|gb|ABC01802.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            capricolum subsp. capricolum ATCC 27343]
          Length = 1479

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 126/615 (20%), Positives = 233/615 (37%), Gaps = 142/615 (23%)

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            PD YL+  +EM+  FS L +  EN +        I+ +++  +   I+     I+    +
Sbjct: 794  PDQYLRTTNEMLEEFSWLED--ENLI------YEIVVINSNKINEMIDVNVIPIK----D 841

Query: 310  ELRNKAVAGLEVRLAQGA--IAKGYHAQDY----RQRLDFELNVIARMKFSGYFLIVADF 363
             L    +A ++ +L       AK  + ++      +RL+ EL  I +  F+  + I    
Sbjct: 842  GLFTPKIANVDEKLRDKCYQTAKQMYGENLPDIVEKRLEKELGSITKHGFAIVYWISHLL 901

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------ 399
            ++ +  +   VG  RGS   S  A    IT+++PL+                        
Sbjct: 902  VKQSYDDGYLVG-SRGSVGSSFVATMAQITEVNPLKAHYRCLNCKYSDFDTDPTYKCGYD 960

Query: 400  -----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                               + FE FL  D   +PD D++F  + +++   + +  +G   
Sbjct: 961  LPTKKCPNCNEKLIGDGHDIPFETFLGFDGDKVPDIDLNFSGEYQNQAHNFTKKMFGENN 1020

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            V +  T  ++  K A   V    +  + +  R       D + P   +            
Sbjct: 1021 VFRAGTISTVAEKTAFGYV----KTYFEETKR-------DASLPRKTE------------ 1057

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQ 557
                 ++RL +++Q   G+ R    H  GI+I   +  +    P+     D+ S    T 
Sbjct: 1058 -----INRLAKLAQ---GVKRTTGQHPGGIIILPNEYEIEDFTPVNYPADDLSSTWKTTH 1109

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--- 614
            F+   I    L+K D LG    T L+   D        +D   IP DD   Y L ++   
Sbjct: 1110 FDFHSIHD-NLLKMDILGHDDPTALRMLRDL-----TNIDPITIPTDDKNVYSLFSSLQA 1163

Query: 615  ------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                         G +GI +  +  +R  L+  +P    D++ +  L       ++ + N
Sbjct: 1164 LNLTSDKINDEITGAIGIPEFGTGFVRNMLKETKPKTFADLVQISGLSHGT---DVWLGN 1220

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R   K+   +I  +I         +++Y   ++ +  L S  +    + +R+  G K K
Sbjct: 1221 ARDLIKDNKANISTVIGCR----DDIMVY---LINMG-LESSLAFMIMESVRKGKGLK-K 1271

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E +D  K+  I     +   K               Y F K+HA AY +++Y+ AW K +
Sbjct: 1272 EWIDIMKKHNIPDWYIDSCLKI-------------KYMFPKAHATAYVLMAYRIAWYKIY 1318

Query: 783  YPVEFLAASMTLEMD 797
            YP E+ A  ++ + D
Sbjct: 1319 YPTEYYATYLSTKAD 1333


>gi|262283487|ref|ZP_06061253.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA]
 gi|262260978|gb|EEY79678.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA]
          Length = 1462

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 194/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 862  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 920

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 921  PHYVCGKCQYSEFITDGSYGSGFDMPDKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDI 980

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 981  DLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1035

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1036 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1062

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1063 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1117

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+ Q E  G    + G+       +  
Sbjct: 1118 QDLSG-----IDPTDIPMDDPGVMALFSGTDILGVTQ-EQIGTPTGMLGIPEFGTNFVRG 1171

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---L 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M       L
Sbjct: 1172 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGL 1231

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I+   +N + +       E   K   Y F
Sbjct: 1232 DPKMAFTIMERVRKGLWLKISEE---ERNGYIAAMKENNVPEWY----IESCGKIK-YMF 1283

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1284 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1316


>gi|299823038|ref|ZP_07054924.1| DNA polymerase III PolC [Listeria grayi DSM 20601]
 gi|299816567|gb|EFI83805.1| DNA polymerase III PolC [Listeria grayi DSM 20601]
          Length = 1470

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 160/761 (21%), Positives = 277/761 (36%), Gaps = 191/761 (25%)

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--------KKLFGDR 181
            RI  S L+++  EGLI+ T  + G +  A      Q AE R+  F        K ++   
Sbjct: 677  RIPRSQLKKL-REGLIIGTACNQGELFEAMMQKGMQEAE-RVAEFYDFIEVQPKPVYAPL 734

Query: 182  LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVV 240
            +   L R           +V++      P+VAT N  +    D     +L+ +   +  +
Sbjct: 735  IERELVRDEKALEEIIKNIVKVGEKTGKPVVATGNVHYKDPHDKIYRKILIFSQGGANPL 794

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            ++ + P V    + ++ SEM+  F+ L E          +   I+  ++ ++  +IE   
Sbjct: 795  NRAELPEV----HFRSTSEMLEEFAFLGE---------EKAEEIVVTNSNLVADWIE--- 838

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFS 354
             D+ K  ++EL    + G E  +   +    +H       +    RL+ EL  I    FS
Sbjct: 839  -DV-KPIKDELYTPKIEGAEDEVRNMSYDMAHHLYGENLPEIVEARLEKELKSIIGHGFS 896

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL----------- 403
              +LI    ++ +  +   VG  RGS   S+ A  + IT+++PL    L           
Sbjct: 897  VIYLISHKLVKKSLIDGYLVG-SRGSVGSSLVATMMEITEVNPLAPHYLCPECKHAEFFD 955

Query: 404  ------------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
                                          FE FL      +PD D++F  + +     Y
Sbjct: 956  DGSIGSGFDLPDKKCPHCGAEYQKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPVAHAY 1015

Query: 434  VQNKYGHERVAQIITFGSLQAKAAL-------RDVGRALQMPYSQVDRLCKLIPNDPAHP 486
             +  +G + V +  T G++  K A        RD G  L +  ++VDRL           
Sbjct: 1016 TKELFGEDYVYRAGTIGTVAEKTAFGFVRGYERDNG--LTIRGAEVDRLVA--------- 1064

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                                             G+ R    H  GI++        +P Y
Sbjct: 1065 ------------------------------GCTGVKRTTGQHPGGIIV--------IPDY 1086

Query: 547  RDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
             DV    PV             T F+   I    ++K D LG    T ++   D      
Sbjct: 1087 MDVYDFSPVQFPADATDSEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDLSG--- 1142

Query: 594  VKVDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDC 639
              +D   IP DD E   L               +  GTLGI +  +  +RQ LE  +P  
Sbjct: 1143 --IDPKTIPTDDEEVMKLFGSTESLGVKPEDIDSKTGTLGIPEFGTRFVRQMLEQTKPTT 1200

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
              +++ +  L       ++ + N  +  K KI  + P +     +    +IYQ       
Sbjct: 1201 FSELVQISGLSHG---TDVWLGNAEELIKNKICEL-PDVIGCRDDIMVFLIYQ------- 1249

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
             L S  +    + +R+  GK + EEM++             + +    + +    K   Y
Sbjct: 1250 GLESSLAFKIMESVRK--GKGLTEEMEQ------------AMIENKVPDWYIDSCKKIKY 1295

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             F K+HAAAY +++ + A+ K H+P+ F A   T+  D+ +
Sbjct: 1296 MFPKAHAAAYVLMAVRIAYFKVHHPLFFYATYFTVRADDFD 1336


>gi|15900208|ref|NP_344812.1| DNA polymerase III PolC [Streptococcus pneumoniae TIGR4]
 gi|111658314|ref|ZP_01409003.1| hypothetical protein SpneT_02000504 [Streptococcus pneumoniae TIGR4]
 gi|21263563|sp|Q97SQ2|DPO3_STRPN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|14971745|gb|AAK74452.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae TIGR4]
          Length = 1463

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELARKLVIENTNALAEIFESVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPHKDCPNCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNKIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|168576299|ref|ZP_02722182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae MLV-016]
 gi|307066950|ref|YP_003875916.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae AP200]
 gi|183577861|gb|EDT98389.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae MLV-016]
 gi|306408487|gb|ADM83914.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae AP200]
          Length = 1463

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELARKLVIENTNALAEIFESVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPHKDCPNCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNKIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|331265607|ref|YP_004325237.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5]
 gi|326682279|emb|CBY99896.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5]
          Length = 1463

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 193/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 863  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 921

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 922  PHYVCGQCQYSEFITDGSYGSGFDMPNKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDI 981

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 982  DLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1036

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1037 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1063

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1064 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1118

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D       ++D + IP DD     L +    LG+   E  G    + G+       +  
Sbjct: 1119 QDL-----SRIDPNEIPMDDEGVMALFSGTDVLGV-TPEQIGTPTGMLGIPEFGTNFVRG 1172

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQL 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M     A L
Sbjct: 1173 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGL 1232

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I     N + +       E   K   Y F
Sbjct: 1233 EPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMKANKVPEWY----IESCGKIK-YMF 1284

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1285 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|325686582|gb|EGD28608.1| DNA polymerase III PolC [Streptococcus sanguinis SK72]
          Length = 1462

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 194/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 862  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 920

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 921  PHYVCGKCQYSEFITDGSYGSGFDMPDKDCPKCGHKLSKNGQDIPFETFLGFDGDKVPDI 980

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 981  DLNFSGEDQPSAHLDVRDIFGSEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1035

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1036 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1062

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1063 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1117

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+ Q E  G    + G+       +  
Sbjct: 1118 QDLSG-----IDPNDIPMDDAGVMALFSGTDILGVTQ-EQIGTPTGMLGIPEFGTNFVRG 1171

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---L 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M       L
Sbjct: 1172 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGL 1231

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I+   +N + +       E   K   Y F
Sbjct: 1232 DPKMAFTIMERVRKGLWLKISEE---ERNGYIAAMKENNVPEWY----IESCGKIK-YMF 1283

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1284 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1316


>gi|324992474|gb|EGC24395.1| DNA polymerase III PolC [Streptococcus sanguinis SK405]
 gi|324995996|gb|EGC27907.1| DNA polymerase III PolC [Streptococcus sanguinis SK678]
 gi|327488780|gb|EGF20579.1| DNA polymerase III PolC [Streptococcus sanguinis SK1058]
          Length = 1462

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 195/513 (38%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL+ I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 862  RIEKELSSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 920

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 921  PHYVCGKCQYSEFITDGSYGSGFDMPDKDCPECGRKLSKNGQDIPFETFLGFDGDKVPDI 980

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 981  DLNFSGEDQPSAHLDVRDIFGAEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1035

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1036 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1062

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1063 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1117

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+ Q E  G    + G+       +  
Sbjct: 1118 QDLSG-----IDPNDIPMDDAGVMALFSGTDILGVTQ-EQIGTPTGMLGIPEFGTNFVRG 1171

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---L 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M       L
Sbjct: 1172 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGL 1231

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I+   +N + +       E   K   Y F
Sbjct: 1232 EPKMAFTIMERVRKGLWLKISEE---ERNGYIAAMKENNVPEWY----IESCGKIK-YMF 1283

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1284 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1316


>gi|307709855|ref|ZP_07646304.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis SK564]
 gi|307619404|gb|EFN98531.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis SK564]
          Length = 1463

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEDLARKLVIENTNALAETFEPVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFIIDGSYGSGFDMPNKDCPKCSHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNEIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|327460706|gb|EGF07041.1| DNA polymerase III PolC [Streptococcus sanguinis SK1]
          Length = 1462

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 195/513 (38%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL+ I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 862  RIEKELSSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 920

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 921  PHYVCGKCQYSEFITDGSYGSGFDMPDKDCPECGRKLSKNGQDIPFETFLGFDGDKVPDI 980

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 981  DLNFSGEDQPSAHLDVRDIFGAEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1035

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1036 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1062

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1063 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1117

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+ Q E  G    + G+       +  
Sbjct: 1118 QDLSG-----IDPNDIPMDDAGVMALFSGTDILGVTQ-EQIGTPTGMLGIPEFGTNFVRG 1171

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---L 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M       L
Sbjct: 1172 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGL 1231

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I+   +N + +       E   K   Y F
Sbjct: 1232 EPKMAFTIMERVRKGLWLKISEE---ERNGYIAAMKENNVPEWY----IESCGKIK-YMF 1283

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1284 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1316


>gi|323350531|ref|ZP_08086193.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66]
 gi|322123213|gb|EFX94898.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66]
          Length = 1462

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 194/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 862  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 920

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 921  PHYVCGKCQYSEFITDGSYGSGFDMPDKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDI 980

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 981  DLNFSGEDQPSAHLDVRDIFGSEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1035

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1036 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1062

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1063 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1117

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+ Q E  G    + G+       +  
Sbjct: 1118 QDLSG-----IDPNDIPMDDAGVMALFSGTDILGVTQ-EQIGTPTGMLGIPEFGTNFVRG 1171

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---L 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M       L
Sbjct: 1172 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGL 1231

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I+   +N + +       E   K   Y F
Sbjct: 1232 EPKMAFTIMERVRKGLWLKISEE---ERNGYIAAMKENNVPEWY----IESCGKIK-YMF 1283

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1284 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1316


>gi|322392646|ref|ZP_08066106.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780]
 gi|321144638|gb|EFX40039.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780]
          Length = 1463

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 139/657 (21%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  +L  ED    ++++      AV + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYLEPEDEIYREIIVRSLGQGAVINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      +NT  +A     I  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEDLARKLVIDNTNAMAEIFEPIEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +  + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVHRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCSQCQYSEFITDGSYGSGFDMPNKDCPNCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++  
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAD 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +                          +REA      V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKF-------------------------YREAE-----VERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNEIPMDDPGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTSTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ M  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGMWLKISEE---ERNGYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANNVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|487436|gb|AAA18178.1| DNA polymerase III [Mycoplasma pulmonis]
 gi|1090178|prf||2018296A DNA polymerase III
          Length = 1435

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 150/728 (20%), Positives = 269/728 (36%), Gaps = 153/728 (21%)

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILP 293
            H   + +KD     P+   K  +EM   FS L  PE +E  V  +   S  ++    I  
Sbjct: 742  HPLFIIKKDMDTFYPEQIYKTTNEMKQEFSFLYDPELIEEIVVKSNLISSQIEKIQVIKD 801

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            +    + DD   + +  +   A       L +             QR++ EL  I    F
Sbjct: 802  KLYTPKFDDSHIKLKKLVYENAWKKYGKNLPEII----------EQRIEKELTPILNYGF 851

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------FSLL 403
               + I +  +Q +  +   VG  RGS   S+ A    IT+++PL           F L+
Sbjct: 852  DVIYWISSILVQKSLSDGYLVG-SRGSIGSSLVATLSGITEVNPLAPHYICSKCQYFELV 910

Query: 404  -------------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                                           FE FL      +PD D++F  + + ++  
Sbjct: 911  KDPMTNSGFDLDDKKCPKCNSFLDKDGQTIPFETFLGFKADKVPDIDLNFSGEYQGKIHD 970

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
             V+  +G +   +  T  ++  K A   + + L+   + +D                   
Sbjct: 971  EVKRLFGSKHTFRAGTISTVAEKTAYGYIKKYLET--ASLD------------------- 1009

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPM---YR 547
                       +D  VD L E   K  G+ R    H  GI+I   +  +    P+     
Sbjct: 1010 ----------YSDNFVDFLTE---KSTGVKRTTGQHPGGIIIIPKEFDVEDFTPVNFPAN 1056

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D  S    T F+   I    ++K D LG    T L+     + ++   V++  IP  D +
Sbjct: 1057 DTESSWKTTHFDFHAIHD-NVLKLDILGHDDPTALK-----MLEKLTGVNVKDIPKKDEK 1110

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
               + T+   LGI   E  G +    G+       +  ++S  +P    ++V  +   +G
Sbjct: 1111 IISIFTSPKALGISSEEILGEKTGALGIPEFGTNFVRQMLSEAKPKTFADLVSISGLSHG 1170

Query: 668  KE-KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +  I + H +I  + K    VI  ++ +M +  +  G  +  +  +   + K     ++
Sbjct: 1171 TDVWINNAHYIIQSLGKTLDQVISCRDDIM-VDLIKKGVPIDLSFTIMEQVRKGKGLSLE 1229

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            ++KE+ I    +N           E + K   Y F K+HA AY +++++ A+ K +YP+E
Sbjct: 1230 QKKEKLIEHGIENWY--------IESMEKIK-YMFPKAHATAYVLMAWRVAFYKVYYPLE 1280

Query: 787  FLAA--SMTLEMDNVE-----------KIKKFC--------------------------- 806
            + A   S   E  ++E           KIK+                             
Sbjct: 1281 YYATYFSTRTEFFDIEIMSKDKLTLESKIKELAYRENLRNDNQLTTKEKNTLPTLYIANE 1340

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDN--RIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
              AR FNIQ +   ++    D+ +  N   +      I G+G T A+ I+++  +K F S
Sbjct: 1341 MKARGFNIQNINLKISLAN-DWIIDKNSKSLIPPFNVIDGLGETLAQKIVDSRNEKEFLS 1399

Query: 865  LEDFCSRV 872
            +EDF +R 
Sbjct: 1400 VEDFINRT 1407


>gi|293402030|ref|ZP_06646169.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304422|gb|EFE45672.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 1443

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 146/699 (20%), Positives = 264/699 (37%), Gaps = 164/699 (23%)

Query: 211  LVATNNSLFLSEEDYEAHDVLM------AVAHSTVVSQKDRPRV--TPDHYLKNRSEMVS 262
            +VAT+++ ++   +    D+ +       + H+  +  ++R R   +PD +L+   EM+ 
Sbjct: 715  IVATSDAHYVHPNEKLIRDIYINSQAIGGMRHALYIYNQERRRKFKSPDQHLRTTDEMLK 774

Query: 263  IFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             ++ L +       ++NT  IA +   I  V   + P  IE          + +LR    
Sbjct: 775  EYAWLGQQRAYDMVIKNTKAIADQIEVIRPVKDALYPPDIEGS--------DQKLR---- 822

Query: 317  AGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+         G    D   +RL+ EL+ I    +   + I    ++ +  +   VG
Sbjct: 823  ---EICFENAHKKYGPVLPDIVEKRLNRELDSIIGAGYYVVYYISHLLVKKSLDDGYLVG 879

Query: 376  PGRGSGAGSVTAYALTITDIDPL------------RF----------------------- 400
              RGS   S  A    IT+++PL            +F                       
Sbjct: 880  -SRGSVGSSFVATMSEITEVNPLAPHYVCPKCHYVKFFTDGSVLNGYDLPDIECPNCGET 938

Query: 401  ------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  +   +PD D++F  D +     Y +  +G + V +  T G++  
Sbjct: 939  IRGDGHDIPFETFLGFEGDKVPDIDLNFSGDYQPNAHAYTKEVFGEDHVYRAGTIGTVAE 998

Query: 455  KAALRDV-GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
            K A   V G   +M                           +   R A++        L 
Sbjct: 999  KTAFGYVKGYEEEM-------------------------GIEGSMRNAQI--------LR 1025

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNM 560
            +++  EG+ R    H  GIV+        VP+  DV    PV             T F+ 
Sbjct: 1026 LAKGCEGVKRTTGQHPGGIVV--------VPLDLDVHDFTPVQYPANDPYAEWKTTHFDF 1077

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
              I    ++KFD LG    T ++     + +R   +D++ IP +D ET  + +    L I
Sbjct: 1078 HQIHD-NILKFDILGHVDPTAMK-----MLERMSGIDVTTIPMNDPETMSIFSKVDALKI 1131

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLID 679
               +++    A  G+       +  ++ L RP   D ++  +   +G +  + +   LID
Sbjct: 1132 DTSKNTEETGA-AGLPEFGTPFVRGILELTRPTTFDELLKISGLSHGTDVWLGNAKDLID 1190

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK---ERFISGA 736
              +   + VI  ++ +M        Y L +   LR  +   I E + K K   + +I   
Sbjct: 1191 DGICTLKSVIGCRDDIMV-------YLLHKG--LRPKLAFTIMESVRKGKGLKDEWIPEM 1241

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             +NG+      + +    K   Y F K+HA AY +++ + AW K H P  +     ++  
Sbjct: 1242 KENGVE-----DWYIESCKKIKYMFPKAHAVAYVMMAIRIAWFKVHEPQYYYCMFFSIRC 1296

Query: 797  D--NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            D  ++E + K  Q  R+   +I          DFK+ DN
Sbjct: 1297 DAYDIETMIKGEQSIRKKMQEI----------DFKLHDN 1325


>gi|157150704|ref|YP_001451113.1| DNA polymerase III PolC [Streptococcus gordonii str. Challis substr.
            CH1]
 gi|157075498|gb|ABV10181.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            gordonii str. Challis substr. CH1]
          Length = 1462

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 194/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 862  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 920

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 921  PHYVCGKCQYSEFITDGSYGSGFDMPDKDCPKCGHKLSKNGQDIPFETFLGFDGDKVPDI 980

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 981  DLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1035

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1036 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1062

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1063 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1117

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+ Q E  G    + G+       +  
Sbjct: 1118 QDLSG-----IDPTDIPMDDPGVMALFSGTDILGVTQ-EQIGTPTGMLGIPEFGTNFVRG 1171

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---L 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M       L
Sbjct: 1172 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGL 1231

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I+   +N + +       E   K   Y F
Sbjct: 1232 DPKMAFTIMERVRKGLWLKISEE---ERNGYIAAMKENNVPEWY----IESCGKIK-YMF 1283

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1284 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1316


>gi|322388734|ref|ZP_08062331.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779]
 gi|321140353|gb|EFX35861.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779]
          Length = 1464

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 141/657 (21%), Positives = 250/657 (38%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  ED    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 735  PVLATGNVHYIEPEDEIYREIIVRSLGQGAMINRTIGHGEAAQPAPLPKAHFRTTNEMLD 794

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K      +E   EL  K  
Sbjct: 795  EFAFLGEDLARKIVIENTNALAEIFEPVEVVKGDLYTPFIDK-----AEETVAELTYKK- 848

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+         G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 849  -AFEIY--------GNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 899

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 900  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPNKDCPNCGHK 958

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 959  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1018

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y ++                         +REA      V+RL   
Sbjct: 1019 KTAYGFV-KGYERDYGKL-------------------------YREAE-----VERL--- 1044

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1045 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1096

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1097 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNDIPMDDPGVMDLFSGTDILGV- 1149

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              +  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1150 TPDQIGTSTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKA 1209

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1210 GIADLSTVIGCRDDIMVYLMHAGLDPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMK 1266

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1267 ANNVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1318


>gi|194397447|ref|YP_002036972.1| DNA polymerase III PolC [Streptococcus pneumoniae G54]
 gi|194357114|gb|ACF55562.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae G54]
          Length = 1463

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELARKLVIENTNALAEIFESVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPHKDCPNCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNKIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|225867817|ref|YP_002743765.1| DNA polymerase III PolC-type [Streptococcus equi subsp.
            zooepidemicus]
 gi|197941223|gb|ACH78331.1| DNA polymerase [Streptococcus equi subsp. zooepidemicus]
 gi|225701093|emb|CAW97928.1| DNA polymerase III PolC-type [Streptococcus equi subsp.
            zooepidemicus]
          Length = 1465

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 141/676 (20%), Positives = 251/676 (37%), Gaps = 163/676 (24%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDH 252
            ++++    + P++AT N  ++  ED    D+++      A+ + T+   +  +P   P+ 
Sbjct: 726  LIEVGRRAQKPVLATGNVHYIEPEDAIYRDIIVRSLGQGAMINRTIGRGEAAKPVPLPEA 785

Query: 253  YLKNRSEMVSIFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + +  +EM+  F+ L + L      +NT  +A R   +  V   +   +I+K        
Sbjct: 786  HFRTTNEMLDDFAFLGKDLAYEVVVKNTQALADRIEEVEVVKGDLYTPYIDKA------- 838

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                   + VA L  + A  AI           R++ EL  I    F+  +L     +  
Sbjct: 839  ------EETVAELTYQKA-FAIYGNPLPDIIDLRIEKELTSILGNGFAVIYLASQMLVNR 891

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------------- 398
            + +    VG  RGS   S  A  + IT+++P+                            
Sbjct: 892  SNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPSCQHSEFITDGSVGSGYDLPN 950

Query: 399  ----RFSLL---------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                R   L         FE FL  D   +PD D++F  D +      V++ +G E   +
Sbjct: 951  KACPRCGTLYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPNAHLDVRDIFGEEYAFR 1010

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V +  +  Y       K  P                        D
Sbjct: 1011 AGTVGTVAEKTAYGFV-KGYERDYG------KFYP------------------------D 1039

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---------- 555
              VDRL   +    G+ R    H  GIV+        +P Y DV    PV          
Sbjct: 1040 AEVDRL---AAGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQFPADDVTAS 1088

Query: 556  ---TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K  D        +D   IP DD +   L 
Sbjct: 1089 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPITIPADDPDVMALF 1142

Query: 613  --------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
                          T  G LGI +  ++ +R  +    P    +++ L  L       ++
Sbjct: 1143 SGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHG---TDV 1199

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             + N +   KE I ++  +I         +++Y    +  A L    + +  + +R+ + 
Sbjct: 1200 WLGNAQDLIKEGIATLKTVIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRKGLW 1251

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             KI EE   ++  +I    +N +         E   K   Y F K+HAAAY +++ + A+
Sbjct: 1252 LKISEE---ERSSYIKAMRQNNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAY 1303

Query: 779  MKTHYPVEFLAASMTL 794
             K H+P+ +  A  ++
Sbjct: 1304 FKVHHPIMYYCAYFSI 1319


>gi|296877258|ref|ZP_06901298.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912]
 gi|296431778|gb|EFH17585.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912]
          Length = 1464

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 139/656 (21%), Positives = 245/656 (37%), Gaps = 143/656 (21%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVVSQKD-RPRVTPDHYLKNRSEMVS 262
            P++AT N  +L  ED    ++++      A+ + T+   +D +P   P  + +  +EM+ 
Sbjct: 735  PVLATGNVHYLEPEDEIYREIIVRSLGQGAMINRTIGHGEDAQPAPLPKAHFRTTNEMLD 794

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K               + V
Sbjct: 795  EFAFLGEDLARKIVIENTNALAETFEPVEVVKGDLYTPFIDK-------------AEETV 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            A L  + A   I           R++ EL  I    F+  +L     +  + +    VG 
Sbjct: 842  AELTYKRAF-EIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVHRSNERGYLVG- 899

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFS-------------------------- 401
             RGS   S  A  + IT+++PL         ++S                          
Sbjct: 900  SRGSVGSSFVATMIGITEVNPLSPHYVCDQCQYSEFITDGSYGSGFDMPDKDCPNCGHKL 959

Query: 402  ------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ AK
Sbjct: 960  SKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAK 1019

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V +  +  + +  R                              D  V+RL   +
Sbjct: 1020 TAYGFV-KGYERDFGKYYR------------------------------DAEVERL---A 1045

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GIV+        +P Y DV    PV             T FN   
Sbjct: 1046 LGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHD 1097

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+  
Sbjct: 1098 IDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNDIPMDDPGVMALFSGTEVLGV-T 1150

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPM 681
             E  G    + G+       +  +V    P     ++  +   +G +  + +   LI   
Sbjct: 1151 AEQIGTPTGMLGIPEFGTNFVRGMVEETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKAG 1210

Query: 682  LKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            + +   VI  ++ +M     A L    + +  + +R+ M  KI EE   ++  +I    +
Sbjct: 1211 IADLSTVIGCRDDIMVYLMHAGLKPKMAFTIMERVRKGMWLKISEE---ERNGYIQAMKE 1267

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1268 NNVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPLYYYCAYFSI 1318


>gi|327468385|gb|EGF13870.1| DNA polymerase III PolC [Streptococcus sanguinis SK330]
          Length = 1462

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 194/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 862  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 920

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 921  PHYVCGKCQYSEFITDGSYGSGFDMSDKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDI 980

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 981  DLNFSGEDQPSAHLDVRDIFGSEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1035

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1036 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1062

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1063 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1117

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+ Q E  G    + G+       +  
Sbjct: 1118 QDLSG-----IDPNDIPMDDTGVMALFSGTDILGVTQ-EQIGTPTGMLGIPEFGTNFVRG 1171

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---L 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M       L
Sbjct: 1172 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGL 1231

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I+   +N + +       E   K   Y F
Sbjct: 1232 DPKMAFTIMERVRKGLWLKISEE---ERNGYIAAMKENNVPEWY----IESCGKIK-YMF 1283

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1284 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1316


>gi|225860309|ref|YP_002741818.1| DNA polymerase III PolC [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229634|ref|ZP_06963315.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada
            MDR_19F]
 gi|225727760|gb|ACO23611.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae Taiwan19F-14]
          Length = 1463

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPHKDCPNCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNKIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|125718854|ref|YP_001035987.1| DNA polymerase III PolC [Streptococcus sanguinis SK36]
 gi|166217455|sp|A3CQI2|DPO3_STRSV RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|125498771|gb|ABN45437.1| DNA polymerase III polC-type, putative [Streptococcus sanguinis SK36]
          Length = 1462

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 194/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 862  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 920

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 921  PHYVCGKCQYSEFITDGSYGSGFDMPDKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDI 980

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 981  DLNFSGEDQPSAHLDVRDIFGSEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1035

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1036 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1062

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1063 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1117

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+ Q E  G    + G+       +  
Sbjct: 1118 QDLSG-----IDPNDIPMDDAGVMALFSGTDILGVTQ-EQIGTPTGMLGIPEFGTNFVRG 1171

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---L 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M       L
Sbjct: 1172 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGL 1231

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I+   +N + +       E   K   Y F
Sbjct: 1232 DPKMAFTIMERVRKGLWLKISEE---ERNGYIAAMKENNVPEWY----IESCGKIK-YMF 1283

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1284 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1316


>gi|182683255|ref|YP_001835002.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|303255179|ref|ZP_07341253.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455]
 gi|182628589|gb|ACB89537.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|301801215|emb|CBW33889.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV200]
 gi|302597812|gb|EFL64884.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455]
          Length = 1463

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPHKDCPNCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNEIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNDYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|15902295|ref|NP_357845.1| DNA polymerase III PolC [Streptococcus pneumoniae R6]
 gi|116515846|ref|YP_815772.1| DNA polymerase III PolC [Streptococcus pneumoniae D39]
 gi|32469721|sp|Q8DRA5|DPO3_STRR6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|122279342|sp|Q04MH6|DPO3_STRP2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|15457800|gb|AAK99055.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae R6]
 gi|116076422|gb|ABJ54142.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae D39]
          Length = 1463

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPHKDCPNCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNKIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|298256053|ref|ZP_06979639.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada
            MDR_19A]
 gi|298502091|ref|YP_003724031.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|298237686|gb|ADI68817.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
          Length = 1463

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPHKDCPNCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNKIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|237649657|ref|ZP_04523909.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974]
 gi|237821357|ref|ZP_04597202.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974M2]
          Length = 1463

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPHKDCPNCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNKIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|168485959|ref|ZP_02710467.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC1087-00]
 gi|183570911|gb|EDT91439.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC1087-00]
          Length = 1463

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPHKDCPNCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNKIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|168493969|ref|ZP_02718112.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC3059-06]
 gi|183576230|gb|EDT96758.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC3059-06]
 gi|332077575|gb|EGI88036.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae GA41301]
          Length = 1463

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPHKDCPNCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNKIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|225856031|ref|YP_002737542.1| DNA polymerase III PolC [Streptococcus pneumoniae P1031]
 gi|225725805|gb|ACO21657.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae P1031]
          Length = 1463

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPNKDCPNCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNEIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNDYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|168208108|ref|ZP_02634113.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens E str. JGS1987]
 gi|170660599|gb|EDT13282.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens E str. JGS1987]
          Length = 1449

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 134/626 (21%), Positives = 228/626 (36%), Gaps = 139/626 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I++L     G + L +LVS M  LD   +  R+  S + E   EGLI+ +   +G + +A
Sbjct: 627  IIILAKNQTGIKNLYKLVS-MAHLDYFARRPRLPKSIITEY-REGLIIGSACEAGQLYKA 684

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
                 +    K + +F      + +  +   +     +  D  RE   ++  L    + P
Sbjct: 685  VLEGKTDGELKEIASFYDYLEIQPIQNNEFLIRKGNVKDEDELRELNRKIYDLGKEMDKP 744

Query: 211  LVATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            +VAT +  FL   D     ++MA   +    +Q       P  Y +  +EM+  F  L E
Sbjct: 745  VVATCDCHFLDPNDEVFRRIIMAGQGYGDADNQ-------PPLYFRTTNEMMKEFEYLGE 797

Query: 270  ------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
                   +ENT +IA     +  +     P  IE          E E+RN  +  +    
Sbjct: 798  EACREVVIENTQKIADMVEAVKPIPDETFPPKIEGA--------EEEIRNMTMNKVHSIY 849

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
             +         +  ++RLD ELN I    ++  +LI    +  + ++   VG  RGS   
Sbjct: 850  GENL------PEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSLEDGYLVG-SRGSVGS 902

Query: 384  SVTAYALTITDIDPL-----------------------------------------RFSL 402
            S  A    IT+++ L                                            +
Sbjct: 903  SFVATMSDITEVNGLPPHYVCPNCKKSEFFLDGSISSGADLPDKNCPECGTKYIKDGHDI 962

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A   V 
Sbjct: 963  PFETFLGFEGDKEPDIDLNFSGEYQAVVHKYTEVLFGKGYVFKAGTIGTVAEKTAYGFVK 1022

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            + LQ                                R   ++   ++RL   +    G+ 
Sbjct: 1023 KYLQE-------------------------------RGLVVSQAEIERL---TIGCTGIK 1048

Query: 523  RHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R +  H  GI++   D  +    P+     DV +D+  T F+   I    L+K D LG  
Sbjct: 1049 RTSGQHPGGIMVVPNDNEIYNFCPIQHPADDVNTDIITTHFDYHSI-SGRLLKLDILGHD 1107

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE------SSGM--- 628
              T+L+     + Q    +D   IP +D +   L T+   LG+ + E      S G+   
Sbjct: 1108 DPTVLR-----MLQDLTGLDPKTIPLNDPKVISLFTSPDALGVTKEELGCEVGSYGLPEF 1162

Query: 629  -----RQALEGMQPDCIEDIIALVSL 649
                 RQ L   QP    D++ +  L
Sbjct: 1163 GTKFVRQMLVDTQPKSFADLVRISGL 1188


>gi|312868001|ref|ZP_07728205.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            parasanguinis F0405]
 gi|311096405|gb|EFQ54645.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            parasanguinis F0405]
          Length = 1464

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 139/656 (21%), Positives = 245/656 (37%), Gaps = 143/656 (21%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVVSQKD-RPRVTPDHYLKNRSEMVS 262
            P++AT N  +L  ED    ++++      A+ + T+   +D +P   P  + +  +EM+ 
Sbjct: 735  PVLATGNVHYLEPEDEIYREIIVRSLGQGAMINRTIGHGEDAQPAPLPKAHFRTTNEMLD 794

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K               + V
Sbjct: 795  EFAFLGEDLARKIVIENTNALAETFEPVEVVKGDLYTPFIDK-------------AEETV 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            A L  + A   I           R++ EL  I    F+  +L     +  + +    VG 
Sbjct: 842  AELTYKRAF-EIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVHRSNERGYLVG- 899

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFS-------------------------- 401
             RGS   S  A  + IT+++PL         ++S                          
Sbjct: 900  SRGSVGSSFVATMIGITEVNPLSPHYVCSQCQYSEFITDGSYGSGFDMPDKDCPNCGHKL 959

Query: 402  ------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ AK
Sbjct: 960  SKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAK 1019

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V +  +  + +  R                              D  V+RL   +
Sbjct: 1020 TAYGFV-KGYERDFGKYYR------------------------------DAEVERL---A 1045

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GIV+        +P Y DV    PV             T FN   
Sbjct: 1046 LGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHD 1097

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+  
Sbjct: 1098 IDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNDIPMDDPGVMALFSGTEVLGV-T 1150

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPM 681
             E  G    + G+       +  +V    P     ++  +   +G +  + +   LI   
Sbjct: 1151 AEQIGTPTGMLGIPEFGTNFVRGMVEETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKAG 1210

Query: 682  LKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            + +   VI  ++ +M     A L    + +  + +R+ M  KI EE   ++  +I    +
Sbjct: 1211 IADLSTVIGCRDDIMVYLMHAGLKPKMAFTIMERVRKGMWLKISEE---ERNGYIQAMKE 1267

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1268 NNVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPLYYYCAYFSI 1318


>gi|168490797|ref|ZP_02714940.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC0288-04]
 gi|225853872|ref|YP_002735384.1| DNA polymerase III PolC [Streptococcus pneumoniae JJA]
 gi|183574875|gb|EDT95403.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC0288-04]
 gi|225723163|gb|ACO19016.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae JJA]
          Length = 1463

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPHKDCPNCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNKIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|324989747|gb|EGC21690.1| DNA polymerase III PolC [Streptococcus sanguinis SK353]
          Length = 1462

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 194/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 862  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 920

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 921  PHYVCGKCQYSEFITDGSYGSGFDMPDKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDI 980

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 981  DLNFSGEDQPSAHLDVRDIFGAEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1035

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1036 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1062

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1063 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1117

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+ Q E  G    + G+       +  
Sbjct: 1118 QDLSG-----IDPNDIPMDDSGVMALFSGTDILGVTQ-EQIGTPTGMLGIPEFGTNFVRG 1171

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---L 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M       L
Sbjct: 1172 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGL 1231

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I+   +N + +       E   K   Y F
Sbjct: 1232 DPKMAFTIMERVRKGLWLKISEE---ERNGYIAAMKENNVPEWY----IESCGKIK-YMF 1283

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1284 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1316


>gi|168484148|ref|ZP_02709100.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC1873-00]
 gi|172042563|gb|EDT50609.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC1873-00]
          Length = 1463

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPHKDCPSCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNEIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNDYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|182419729|ref|ZP_02950970.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum 5521]
 gi|237665534|ref|ZP_04525522.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum E4 str. BoNT E BL5262]
 gi|182376466|gb|EDT74047.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum 5521]
 gi|237658481|gb|EEP56033.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum E4 str. BoNT E BL5262]
          Length = 1472

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 135/633 (21%), Positives = 228/633 (36%), Gaps = 156/633 (24%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++L     G + L +LVS  +L D   +  RI  S  ++  +EGLI+ +  S G + ++ 
Sbjct: 642  IILAKDYTGLKNLYKLVSYSHL-DYFYKKPRILKSMFKKY-SEGLILGSACSEGELFQSI 699

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY--RESQVVQLAYTHELP------- 210
                S          + +  D  Y+ +Q   G D Y  R  QV    Y  E+        
Sbjct: 700  LLGKSDEE------IENIAKDYDYLEIQP-IGNDDYLIRNEQVPNKEYIKEINRKIISLG 752

Query: 211  ------LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
                  +VAT +  F+  ED     +L A         KD     P  YLK   EM+  F
Sbjct: 753  EKLGKLVVATGDVHFMDPEDEIYRRILEAGQ-----GFKDADMQAP-LYLKTTEEMLEEF 806

Query: 265  SDLPE------ALENTVEIARRCSFILQVHAPILPRFI---EKECDDIQKEEENELRNKA 315
            S L E       + NT +I+  C  I  +     P  I   E+   DI   + +EL  + 
Sbjct: 807  SYLGEEKAYEVVVTNTNKISEMCEQISPISPEKCPPHIDGCEQTIKDIAYGKAHELYGEN 866

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
            +  +                  + RL+ EL+ I +  FS  ++I    +  +  +   VG
Sbjct: 867  LPKI-----------------VKDRLEKELDSIIKNGFSVMYIIAQKLVWKSNDDGYLVG 909

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   SV AY   IT+++ L         ++S                         
Sbjct: 910  -SRGSVGSSVVAYMTGITEVNALPPHYRCPKCKYSDFNDYGSKNGFDLPDKVCPACGENM 968

Query: 402  ------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL  +    PD D++F  + + +  +Y +  +G     +  T G++  K
Sbjct: 969  DKDGMDIPFETFLGFNGDKEPDIDLNFSGEYQAKAHKYTEVIFGKGTTFKAGTIGTIAEK 1028

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V                                   ++ E +    +   +  I+
Sbjct: 1029 TAFGYV----------------------------------KKYYEEKSQTITKAEITRIA 1054

Query: 516  QKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIK 570
            +   G+ R    H  GI++    R + +  P+     D  SD+  T F+   I++  L+K
Sbjct: 1055 KGCTGIKRTTGQHPGGIIVVPKGREIFEFCPVQHPADDPDSDIITTHFDYHSIDQ-NLLK 1113

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------G 616
             D LG    T+++     + Q    ++   IP DD ET  L ++               G
Sbjct: 1114 LDILGHDDPTVIR-----MLQDITGINPHTIPLDDKETMSLFSSTTALGVTPEQINSKVG 1168

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            T GI +  +  +R  L    P    D++ +  L
Sbjct: 1169 TFGIPEFGTKFVRGMLVDTLPKTFSDLLCISGL 1201



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            Y F K+HAAAY +++++ AW K H P  + AA  ++
Sbjct: 1292 YMFPKAHAAAYVMMAFRIAWFKVHIPKAYYAAYFSI 1327


>gi|5912321|emb|CAB56106.1| DNA polymerase III alpha subunit [Rickettsia sibirica]
          Length = 360

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 100/204 (49%), Gaps = 13/204 (6%)

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I ++L AIKGV     + +  E  A   F S+ DF  R+  K +N ++LE+L+ +G  D 
Sbjct: 44   IIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDE 103

Query: 894  FGYSRMQLLQSLDNIQKYAQ-WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
               +R+QLL S+  +  Y+  + E+  +N+   I   +  + S  I +     + +++ F
Sbjct: 104  LHDNRLQLLSSIPKLLSYSTAYHEEQESNQFSLI---KVSSLSPTILVSSDYADKNTLAF 160

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTR 1010
              E   +G + S HPL  Y+ I  ++ I    +    +    N + LA ++   Q+K +R
Sbjct: 161  Y-EFEAMGLFISNHPLTEYQEIFSRLNILNIADLHNNLPDGTNRVNLAGVI---QKKDSR 216

Query: 1011 KGSRIGWVT--FSEPAKEYEANFF 1032
              +R  +VT   S+P   +E + F
Sbjct: 217  MSARGRFVTLVLSDPENIFELSIF 240


>gi|303259383|ref|ZP_07345360.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293]
 gi|303261138|ref|ZP_07347087.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292]
 gi|303263466|ref|ZP_07349389.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397]
 gi|303265758|ref|ZP_07351656.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457]
 gi|303267811|ref|ZP_07353613.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458]
 gi|302637975|gb|EFL68461.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292]
 gi|302639317|gb|EFL69775.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293]
 gi|302642507|gb|EFL72852.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458]
 gi|302644666|gb|EFL74915.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457]
 gi|302647239|gb|EFL77463.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397]
          Length = 1463

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPHKDCPNCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNEIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNDYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|148996699|ref|ZP_01824417.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP11-BS70]
 gi|147757274|gb|EDK64313.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP11-BS70]
          Length = 553

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 91/408 (22%), Positives = 159/408 (38%), Gaps = 74/408 (18%)

Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ AK A   V +
Sbjct: 57  FETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-K 115

Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             +  Y +  R                              D  V+RL   +Q   G+ R
Sbjct: 116 GYERDYGKFYR------------------------------DAEVERL---AQGAAGVKR 142

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
               H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 143 TTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLK 193

Query: 571 FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            D LG    T+++K  D        +D + IP DD     L +    LG+   E  G   
Sbjct: 194 LDVLGHDDPTMIRKLQDLSG-----IDPNKIPMDDEGVMALFSGTDVLGV-TPEQIGTPT 247

Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE-KIVSIHPLIDPMLKETQGVI 689
            + G+       +  +V    P     ++  +   +G +  + +   LI   + +   VI
Sbjct: 248 GMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVI 307

Query: 690 IYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
             ++ +M     A L    + +  + +R+ +  KI EE   ++  +I     N + +   
Sbjct: 308 GCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMKANKVPEWY- 363

Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 364 ---IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 407


>gi|319777750|ref|YP_004137401.1| DNA polymerase iii alpha subunit [Mycoplasma fermentans M64]
 gi|318038825|gb|ADV35024.1| DNA polymerase III alpha subunit [Mycoplasma fermentans M64]
          Length = 1461

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 139/670 (20%), Positives = 247/670 (36%), Gaps = 193/670 (28%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             +R++ ELN I    FS  + I    IQ +  N   VG  RGS   S  A    IT+++P
Sbjct: 865  EERIEAELNPIIDYGFSVIYWISHILIQKSTDNGFVVG-SRGSVGSSFVATLAGITEVNP 923

Query: 398  L--------------------------------RFSLL---------FERFLNPDRMSMP 416
            L                                + ++L         FE FL      +P
Sbjct: 924  LPPHYLCNKCKYFELSKDEKITSGYDLPNKNCPKCNILLEADGQGIPFETFLGFKADKVP 983

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D++F  D + ++         H  V +I  FG+     A      AL+  Y  V    
Sbjct: 984  DIDLNFSGDIQGDI---------HNEVKRI--FGNTHTLKAGTISTVALKTSYGHV---- 1028

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                         +A  +++       ++P +D L   + K+E L R    H  GI+I  
Sbjct: 1029 -------------KAFTEEAM---RNYSEPFIDFL---AHKIEKLKRTTGQHPGGILI-- 1067

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKA--------GLIKFDFLGLKTLTLLQKSLDF 588
              + +   +Y     + P  + +  W+            ++K D LG    T+++     
Sbjct: 1068 --IPKEFDVYDFTPINYPANEPDSSWLTSHFDFHSIHDNILKLDLLGHDNPTIIR----- 1120

Query: 589  LAQRGVKVDLSLIPFDDHETYHLLT---------------TKGTLGIFQLESSGMRQALE 633
            L ++   +++  IP +D +   L                 T G LG+ +  +S +RQ L+
Sbjct: 1121 LLKKYTNINIDDIPKNDPKVLSLFASTKAMNIKPEQINNETTGALGLPEFGTSFVRQMLK 1180

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +P    ++I+L  L      +N+ +     N  +++VS          E   VI  ++
Sbjct: 1181 EAKPKSFANLISLAGLSHG---ENVWL-----NNAQELVSKKNF------EITDVICCRD 1226

Query: 694  QVMQI-----AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
             +MQ       + L  +++ E   +R+  G    +E+ + KE              +A  
Sbjct: 1227 DIMQFLLKKKVEPLFAFNIMEK--VRKGKGL-TDDEVKRLKEY------------KVADW 1271

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL-------------- 794
            + E + K   Y F K+HA AY ++++  AW K +YP+   A                   
Sbjct: 1272 MIESMKKIK-YMFPKAHATAYVLMAWWIAWFKLYYPLAHYACYFATHAKAVEIESMIDIK 1330

Query: 795  ----------EMDNVEKIKKFCQD--------------ARQF---NIQIMPPSVNTPCVD 827
                      +++N+ K ++  +D              AR F   NI +   + +   +D
Sbjct: 1331 GGHKVTDRLNQLNNIPKNERKVKDDDLIPVFEIAQELYARGFYIANIDLKKSAAHEWIID 1390

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL-- 885
             K G   +     +I G+G   A  ++EA   K F S ED   R     +N+ ++E +  
Sbjct: 1391 NKHG--CLIPPFKSIDGLGDAAAVSLVEARDAKDFTSKEDVIRRTS---VNKTLIEKMDK 1445

Query: 886  --VFAGALDC 893
              +F G  D 
Sbjct: 1446 LNIFKGLDDT 1455


>gi|148988015|ref|ZP_01819478.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP6-BS73]
 gi|147926479|gb|EDK77552.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP6-BS73]
          Length = 1463

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPHKDCPNCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNKIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|327462769|gb|EGF09091.1| DNA polymerase III PolC [Streptococcus sanguinis SK1057]
          Length = 1462

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 194/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 862  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 920

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 921  PHYVCGKCQYSEFITDGSYGSGFDMPDKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDI 980

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 981  DLNFSGEDQPSAHLDVRDIFGAEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1035

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1036 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1062

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1063 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1117

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+ Q E  G    + G+       +  
Sbjct: 1118 QDLSG-----IDPNDIPMDDAGVMALFSGTDILGVTQ-EQIGTPTGMLGIPEFGTNFVRG 1171

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---L 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M       L
Sbjct: 1172 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGL 1231

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I+   +N + +       E   K   Y F
Sbjct: 1232 DPKMAFTIMERVRKGLWLKISEE---ERNGYIAAMKENNVPEWY----IESCGKIK-YMF 1283

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1284 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1316


>gi|322390849|ref|ZP_08064359.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903]
 gi|321142519|gb|EFX37987.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903]
          Length = 1464

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 139/656 (21%), Positives = 245/656 (37%), Gaps = 143/656 (21%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVVSQKD-RPRVTPDHYLKNRSEMVS 262
            P++AT N  +L  ED    ++++      A+ + T+   +D +P   P  + +  +EM+ 
Sbjct: 735  PVLATGNVHYLEPEDEIYREIIVRSLGQGAMINRTIGHGEDAQPAPLPKAHFRTTNEMLD 794

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K               + V
Sbjct: 795  EFAFLGEDLARKIVIENTNALAETFEPVEVVKGDLYTPFIDK-------------AEETV 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            A L  + A   I           R++ EL  I    F+  +L     +  + +    VG 
Sbjct: 842  AELTYKRAF-EIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVHRSNERGYLVG- 899

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFS-------------------------- 401
             RGS   S  A  + IT+++PL         ++S                          
Sbjct: 900  SRGSVGSSFVATMIGITEVNPLSPHYVCSQCQYSEFITDGSYGSGFDMPDKDCPNCGHKL 959

Query: 402  ------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ AK
Sbjct: 960  SKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAK 1019

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V +  +  + +  R                              D  V+RL   +
Sbjct: 1020 TAYGFV-KGYERDFGKYYR------------------------------DAEVERL---A 1045

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GIV+        +P Y DV    PV             T FN   
Sbjct: 1046 LGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHD 1097

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+  
Sbjct: 1098 IDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNDIPMDDPGVMALFSGTEVLGV-T 1150

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPM 681
             E  G    + G+       +  +V    P     ++  +   +G +  + +   LI   
Sbjct: 1151 AEQIGTPTGMLGIPEFGTNFVRGMVEETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKAG 1210

Query: 682  LKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            + +   VI  ++ +M     A L    + +  + +R+ M  KI EE   ++  +I    +
Sbjct: 1211 IADLSTVIGCRDDIMVYLMHAGLKPKMAFTIMERVRKGMWLKISEE---ERNGYIQAMKE 1267

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1268 NNVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPLYYYCAYFSI 1318


>gi|301793541|emb|CBW35916.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV104]
          Length = 1463

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPHKDCPNCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNEIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNDYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|205373423|ref|ZP_03226227.1| DNA polymerase III PolC [Bacillus coahuilensis m4-4]
          Length = 1436

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 182/912 (19%), Positives = 334/912 (36%), Gaps = 221/912 (24%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             L+     G + L +L+S  +L     +  RI  S LQ+   EG+++ +G   G +    
Sbjct: 614  TLIAQNDTGLKNLFKLISISHL-HYFHRVPRIPRSVLQKY-REGILVGSGCDKGEVFEGM 671

Query: 160  FFNSSQVAEK--RLLTFKKLFGDRLYVNL------QRHRGYDRYRESQVVQLAYTHELPL 211
               S +  E   R   + ++    +Y +L      Q  +  +    + +V L    E P+
Sbjct: 672  MQKSPEEVEDKARFYDYFEVHPKEVYSHLIELELVQSEKNLEDIIHN-IVALGEKLETPV 730

Query: 212  VATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
            VA+ N  +   +D     +L+     +  +++ + P+V    + +   EM+  F    E 
Sbjct: 731  VASGNVHYKDPKDSIYRKILIGSQGGANPLNRHNLPKV----HFRTTDEMLHAF----EF 782

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--EVRLAQGAI 328
            L N      +   I+  +  ++   I    D+I K  +++L    + G   E+R    ++
Sbjct: 783  LGN-----EKAKEIVVTNTNLIADMI----DEI-KPIKDDLYTPKIDGADEEIRRMSYSM 832

Query: 329  AKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            AK  + ++  +    R++ EL  I    F+  +LI    ++ +  +   VG  RGS   S
Sbjct: 833  AKSIYGENLPEIVEARIEKELKSIIGHGFAVIYLISHKLVKKSLIDGYLVG-SRGSVGSS 891

Query: 385  VTAYALTITDIDPL-----------------------------------------RFSLL 403
              A    IT+++PL                                            + 
Sbjct: 892  FVATMTEITEVNPLPPHYVCPTCKKSEFFDDGSVGSGFDLSNKSCPDCDVPYTKDGHDIP 951

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K A   V  
Sbjct: 952  FETFLGFKGDKVPDIDLNFSGEYQPRAHDYTKVLFGEDNVFRAGTIGTVAEKTAFGYV-- 1009

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
                                      +  A D+      +    VDRL+   +   G+ R
Sbjct: 1010 --------------------------KGYASDNNLT---IRGAEVDRLV---KGCTGVKR 1037

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDV-------------RSDLPVTQFNMKWIEKAGLIK 570
                H  GI++        VP Y D+              S+   T F+   I    L+K
Sbjct: 1038 TTGQHPGGIIV--------VPDYMDIYDFSPIQFPADDRTSEWKTTHFDFHSIHD-NLLK 1088

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY--------------HLLTTKG 616
             D LG    T+++   D        +D   IP DD E                 +L   G
Sbjct: 1089 LDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMKIFSGTESLGVTEEQILCKTG 1143

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            TLGI +  +  +RQ LE  +P    +++ +  L     +          N +E I +   
Sbjct: 1144 TLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHGTDV-------WLGNAQELIHNQTC 1196

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK--ERFIS 734
             +  ++     +++Y   + Q  +    + + E+    + +  +++EEM K    + +I 
Sbjct: 1197 TLSEVIGCRDDIMVYL--IYQGLEPSLAFKIMESVRKGKGLQPEMEEEMKKNNVPDWYID 1254

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               K                    Y F K+HAAAY +++ + A+ K H+P+ + AA  T+
Sbjct: 1255 SCKK------------------IKYMFPKAHAAAYVLMAVRIAYFKVHHPILYYAAYFTV 1296

Query: 795  EMDN----------------VEKIKKFCQDA-------------------RQFNIQIMPP 819
              ++                VE+I     DA                   R F+ Q +  
Sbjct: 1297 RAEDFDVDAMAKGPMSIRAKVEEILAKGLDAAPKEKSLLTVLELALEMTERGFSFQKV-H 1355

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  N +     AI G+GT  A +I++A  +  F S ED   R    K+++
Sbjct: 1356 LYKSHASEFIIEGNTLIPPFNAIPGLGTNAAINIVKAREEGEFLSKEDLQQR---GKVSK 1412

Query: 880  RVLESLVFAGAL 891
             ++E L   G L
Sbjct: 1413 TIIEYLDNHGCL 1424


>gi|325695495|gb|EGD37395.1| DNA polymerase III PolC [Streptococcus sanguinis SK150]
          Length = 1462

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 194/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 862  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 920

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 921  PHYVCGKCQYSEFITDGSYGSGFDMPDKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDI 980

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 981  DLNFSGEDQPSAHLDVRDIFGSEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1035

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1036 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1062

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1063 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1117

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+ Q E  G    + G+       +  
Sbjct: 1118 QDLSG-----IDPNDIPMDDAGVMALFSGTDILGVTQ-EQIGTPTGMLGIPEFGTNFVRG 1171

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---L 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M       L
Sbjct: 1172 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGL 1231

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I+   +N + +       E   K   Y F
Sbjct: 1232 DPKMAFTIMERVRKGLWLKISEE---ERNGYIAAMKENNVPEWY----IESCGKIK-YMF 1283

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1284 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1316


>gi|308190354|ref|YP_003923285.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER]
 gi|307625096|gb|ADN69401.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER]
          Length = 1461

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 139/670 (20%), Positives = 247/670 (36%), Gaps = 193/670 (28%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             +R++ ELN I    FS  + I    IQ +  N   VG  RGS   S  A    IT+++P
Sbjct: 865  EERIEAELNPIIDYGFSVIYWISHILIQKSTDNGFVVG-SRGSVGSSFVATLAGITEVNP 923

Query: 398  L--------------------------------RFSLL---------FERFLNPDRMSMP 416
            L                                + ++L         FE FL      +P
Sbjct: 924  LPPHYLCNKCKYFELSKDEKITSGYDLPNKNCPKCNILLEADGQGIPFETFLGFKADKVP 983

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D++F  D + ++         H  V +I  FG+     A      AL+  Y  V    
Sbjct: 984  DIDLNFSGDIQGDI---------HNEVKRI--FGNTHTLKAGTISTVALKTSYGHV---- 1028

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                         +A  +++       ++P +D L   + K+E L R    H  GI+I  
Sbjct: 1029 -------------KAFTEEAM---RNYSEPFIDFL---AHKIEKLKRTTGQHPGGILI-- 1067

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKA--------GLIKFDFLGLKTLTLLQKSLDF 588
              + +   +Y     + P  + +  W+            ++K D LG    T+++     
Sbjct: 1068 --IPKEFDVYDFTPINYPANEPDSSWLTSHFDFHSIHDNILKLDLLGHDNPTIIR----- 1120

Query: 589  LAQRGVKVDLSLIPFDDHETYHLLT---------------TKGTLGIFQLESSGMRQALE 633
            L ++   +++  IP +D +   L                 T G LG+ +  +S +RQ L+
Sbjct: 1121 LLKKYTNINIDDIPKNDPKVLSLFASTKAMNIKPEQINNETTGALGLPEFGTSFVRQMLK 1180

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +P    ++I+L  L      +N+ +     N  +++VS          E   VI  ++
Sbjct: 1181 EAKPKSFANLISLAGLSHG---ENVWL-----NNAQELVSKKNF------EITDVICCRD 1226

Query: 694  QVMQI-----AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
             +MQ       + L  +++ E   +R+  G    +E+ + KE              +A  
Sbjct: 1227 DIMQFLLKKKVEPLFAFNIMEK--VRKGKGL-TDDEVKRLKEY------------KVADW 1271

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL-------------- 794
            + E + K   Y F K+HA AY ++++  AW K +YP+   A                   
Sbjct: 1272 MIESMKKIK-YMFPKAHATAYVLMAWWIAWFKLYYPLAHYACYFATHAKAVEIESMIDIK 1330

Query: 795  ----------EMDNVEKIKKFCQD--------------ARQF---NIQIMPPSVNTPCVD 827
                      +++N+ K ++  +D              AR F   NI +   + +   +D
Sbjct: 1331 GGHKVTDRLNQLNNIPKNERKVKDDDLIPVFEIAQELYARGFYIANIDLKKSAAHEWIID 1390

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL-- 885
             K G   +     +I G+G   A  ++EA   K F S ED   R     +N+ ++E +  
Sbjct: 1391 NKHG--CLIPPFKSIDGLGDAAAVSLVEARDAKDFTSKEDVIRRTS---VNKTLIEKMDK 1445

Query: 886  --VFAGALDC 893
              +F G  D 
Sbjct: 1446 LNIFKGLDDT 1455


>gi|169833032|ref|YP_001693801.1| DNA polymerase III PolC [Streptococcus pneumoniae Hungary19A-6]
 gi|168995534|gb|ACA36146.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae Hungary19A-6]
          Length = 1463

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 192/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 863  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 921

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 922  PHYVCGQCQYSEFITDGSYGSGFDMPNKDCPKCGHKLSKNGQDIPFETFLGFDGDKVPDI 981

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 982  DLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1036

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1037 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1063

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1064 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1118

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+   E  G    + G+       +  
Sbjct: 1119 QDLSG-----IDPNEIPMDDEGVMALFSGTDVLGV-TPEQIGTPTGMLGIPEFGTNFVRG 1172

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQL 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M     A L
Sbjct: 1173 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGL 1232

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I     N + +       E   K   Y F
Sbjct: 1233 EPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMKANKVPEWY----IESCGKIK-YMF 1284

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1285 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|168216978|ref|ZP_02642603.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens NCTC 8239]
 gi|182380934|gb|EDT78413.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens NCTC 8239]
          Length = 1449

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 134/626 (21%), Positives = 228/626 (36%), Gaps = 139/626 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I++L     G + L +LVS M  LD   +  R+  S + E   EGLI+ +   +G + +A
Sbjct: 627  IIILAKNQTGIKNLYKLVS-MAHLDYFARRPRLPKSIITEY-REGLIIGSACEAGQLYKA 684

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
                 +    K + +F      + +  +   +     +  D  RE   ++  L    + P
Sbjct: 685  VLEGKTDGELKEIASFYDYLEIQPIQNNEFLIRKGNVKDEDELRELNRKIYDLGKEMDKP 744

Query: 211  LVATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            +VAT +  FL   D     ++MA   +    +Q       P  Y +  +EM+  F  L E
Sbjct: 745  VVATCDCHFLDPNDEVFRRIIMAGQGYGDADNQ-------PPLYFRTTNEMMKEFEYLGE 797

Query: 270  ------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
                   +ENT +IA     +  +     P  IE          E E+RN  +  +    
Sbjct: 798  EACREVVIENTQKIADMVEAVKPIPDETFPPKIEGA--------EEEIRNMTMNKVHSIY 849

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
             +         +  ++RLD ELN I    ++  +LI    +  + ++   VG  RGS   
Sbjct: 850  GENL------PEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSLEDGYLVG-SRGSVGS 902

Query: 384  SVTAYALTITDIDPL-----------------------------------------RFSL 402
            S  A    IT+++ L                                            +
Sbjct: 903  SFVATMSDITEVNGLPPHYVCPNCKKSEFFLDGSISSGADLPDKNCPDCGAKYIKDGHDI 962

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A   V 
Sbjct: 963  PFETFLGFEGDKEPDIDLNFSGEYQAVVHKYTEVLFGKGYVFKAGTIGTVAEKTAYGFVK 1022

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            + LQ                                R   ++   ++RL   +    G+ 
Sbjct: 1023 KYLQE-------------------------------RGLVVSQAEIERL---TIGCTGIK 1048

Query: 523  RHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R +  H  GI++   D  +    P+     DV +D+  T F+   I    L+K D LG  
Sbjct: 1049 RTSGQHPGGIMVVPNDNEIYNFCPIQHPADDVNTDIITTHFDYHSIS-GRLLKLDILGHD 1107

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE------SSGM--- 628
              T+L+     + Q    +D   IP +D +   L T+   LG+ + E      S G+   
Sbjct: 1108 DPTVLR-----MLQDLTGLDPKTIPLNDPKVISLFTSPDALGVTKEELGCEVGSYGLPEF 1162

Query: 629  -----RQALEGMQPDCIEDIIALVSL 649
                 RQ L   QP    D++ +  L
Sbjct: 1163 GTKFVRQMLVDTQPKSFADLVRISGL 1188


>gi|322377559|ref|ZP_08052049.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. M334]
 gi|321281324|gb|EFX58334.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. M334]
          Length = 1463

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAIINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     I  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELARKLVIENTNALAEIFEPIEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +  + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVHRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPNKDCPNCGYK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D  +     +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSS-----IDPNEIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|307126490|ref|YP_003878521.1| DNA polymerase III subunit alpha, Gram-positive type [Streptococcus
            pneumoniae 670-6B]
 gi|306483552|gb|ADM90421.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae 670-6B]
 gi|332076720|gb|EGI87182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae GA17545]
          Length = 1463

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPHKDCPNCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNKIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|148994700|ref|ZP_01823804.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68]
 gi|168489751|ref|ZP_02713950.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae SP195]
 gi|147927100|gb|EDK78140.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68]
 gi|183571799|gb|EDT92327.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae SP195]
 gi|332075131|gb|EGI85601.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae GA17570]
          Length = 1463

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 192/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 863  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 921

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 922  PHYVCGQCQYSEFITDGSYGSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDI 981

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 982  DLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1036

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1037 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1063

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1064 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1118

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+   E  G    + G+       +  
Sbjct: 1119 QDLSG-----IDPNKIPMDDEGVMALFSGTDVLGV-TPEQIGTPTGMLGIPEFGTNFVRG 1172

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQL 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M     A L
Sbjct: 1173 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGL 1232

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I     N + +       E   K   Y F
Sbjct: 1233 EPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMKANKVPEWY----IESCGKIK-YMF 1284

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1285 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|325688979|gb|EGD30987.1| DNA polymerase III PolC [Streptococcus sanguinis SK115]
          Length = 1462

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 194/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 862  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 920

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 921  PHYVCGKCQYSEFITDGSYGSGFDMPDKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDI 980

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 981  DLNFSGEDQPSAHLDVRDIFGAEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1035

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1036 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1062

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1063 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1117

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+ Q E  G    + G+       +  
Sbjct: 1118 QDLSG-----IDPNDIPMDDAGVMALFSGTDILGVTQ-EQIGTPTGMLGIPEFGTNFVRG 1171

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---L 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M       L
Sbjct: 1172 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGL 1231

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I+   +N + +       E   K   Y F
Sbjct: 1232 DPKMAFTIMERVRKGLWLKISEE---ERNGYIAAMKENNVPEWY----IESCGKIK-YMF 1283

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1284 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1316


>gi|270292055|ref|ZP_06198270.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. M143]
 gi|270279583|gb|EFA25425.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. M143]
          Length = 1463

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELAHRLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPNKDCPNCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNEIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|313888341|ref|ZP_07822012.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845744|gb|EFR33134.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 1012

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 151/777 (19%), Positives = 275/777 (35%), Gaps = 192/777 (24%)

Query: 199 QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH--YLKN 256
           +++ +     +P+VA +++ +L E    + DVL  +  +    + D PR + +   Y K 
Sbjct: 295 KIISIGEELNIPVVADSDTYYLEE----SEDVLRRIVLNGKPGRPD-PRASRNQKFYFKT 349

Query: 257 RSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             EM+  FS L +       + NT ++      I  +     P  IE   D ++  E   
Sbjct: 350 TEEMLDEFSYLGQDKAYEVVVTNTNKLKNSIKDIKPIPDGTYPPVIEGSDDSLR--EMTY 407

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            +   + G E+             +    RL+ EL  I    +S  ++I    ++ +  +
Sbjct: 408 KKAHDIYGDEL------------PKIVEDRLEKELKSIISNGYSVLYIIAQKLVKKSNDD 455

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPL---------RFS-------------------- 401
              VG  RGS   S  A    IT+++PL         ++S                    
Sbjct: 456 GFLVG-SRGSVGSSFVATMADITEVNPLPPHYICPNCKYSEFTEDLTYGSGVDMPDKVCP 514

Query: 402 ------------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                       + FE FL       PD D++F  + +    +Y +  +G   V +  T 
Sbjct: 515 KCGSPLKKDGHNIPFEVFLGFYGDKEPDIDLNFAGEYQPRAHKYTEELFGEGYVFRAGTI 574

Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
           G +  K A           Y  V +                       F    ++   +D
Sbjct: 575 GKIADKTA-----------YGYVKKY----------------------FENKHISPIEID 601

Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMY---RDVRSDLPVTQFNMKWIE 564
           RL   S+ +    R +  H  G++I  +  S     P+     D  S +  T F+  +I 
Sbjct: 602 RL---SRAITDGKRTSGQHPGGVMIVPKTNSIFDFTPIQYPADDPSSGVITTHFDYNFIH 658

Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT---------- 614
              ++K D LG    T+++   DF       +D + I  DD +T  +  +          
Sbjct: 659 -GKILKLDILGHDGPTIIKMLEDFTG-----IDSNTIRLDDKKTLSIFNSAEAFNMDEEV 712

Query: 615 ----KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
                GTLGI +  +S +   L    P    D++ +  L     +               
Sbjct: 713 FSCKTGTLGIPEFGTSFVISMLLETNPKNFADLVRISGLSHGTDV--------------W 758

Query: 671 IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA-MGKKIKEEMDKQK 729
           I +   L+D    E + VI  +E +M         +    D + +   GK + EE +   
Sbjct: 759 ISNAQELVDSGRAELKDVIATREDIMVYLINAGAENKMAFDTMEKVRKGKGLTEEQE--- 815

Query: 730 ERFISGASKNGISKTIAVNIFEL-LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
                      I K + +  + +   K   Y F K+HA AY ++S++ A+ K +YP+ F 
Sbjct: 816 ----------SIMKNLDLPEWYIDSCKKIKYMFPKAHAVAYVMLSFRIAYYKLNYPLAFY 865

Query: 789 AASMTLEM-----DNVEKIKKFCQDARQFNIQIMPPSV---------------------- 821
           A   T+++     +N+ +   F ++  +   +I  P+                       
Sbjct: 866 ATFFTIKLTDFNGENIIEGPNFLKNRIKMLREIEKPTAKDKGEIRVSEVALEMYARGFQF 925

Query: 822 ------NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                  +    F + D +I   + A+ G+G   A  I + S    + S+EDF  R 
Sbjct: 926 LKADIYKSKASKFTIEDGKIRMPIRAVPGIGENCANKIEQESQKSKYLSIEDFSKRT 982


>gi|149017968|ref|ZP_01834427.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP23-BS72]
 gi|147931532|gb|EDK82510.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP23-BS72]
          Length = 1463

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 192/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 863  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 921

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 922  PHYVCGQCQYSEFITDGSYGSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDI 981

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 982  DLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1036

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1037 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1063

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1064 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1118

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+   E  G    + G+       +  
Sbjct: 1119 QDLSG-----IDPNKIPMDDEGVMALFSGTDVLGV-TPEQIGTPTGMLGIPEFGTNFVRG 1172

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQL 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M     A L
Sbjct: 1173 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGL 1232

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I     N + +       E   K   Y F
Sbjct: 1233 EPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMKANKVPEWY----IESCGKIK-YMF 1284

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1285 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|149011144|ref|ZP_01832449.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP19-BS75]
 gi|147764780|gb|EDK71710.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP19-BS75]
          Length = 1463

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 192/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 863  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 921

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 922  PHYVCGQCQYSEFITDGSYGSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDI 981

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 982  DLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1036

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1037 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1063

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1064 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1118

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+   E  G    + G+       +  
Sbjct: 1119 QDLSG-----IDPNKIPMDDEGVMALFSGTDVLGV-TPEQIGTPTGMLGIPEFGTNFVRG 1172

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQL 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M     A L
Sbjct: 1173 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGL 1232

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I     N + +       E   K   Y F
Sbjct: 1233 EPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMKANKVPEWY----IESCGKIK-YMF 1284

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1285 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|149006027|ref|ZP_01829756.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae SP18-BS74]
 gi|147762383|gb|EDK69344.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae SP18-BS74]
          Length = 1463

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV-SQKDRPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  E+    ++++      A+ + T+   +  +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +Q + +    VG
Sbjct: 842  ---ELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPHKDCPNCGHK 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  Y +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDYGKFYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNEIPMDDEGVMALFSGTDVLGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQ 1208

Query: 681  MLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANKVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|223933907|ref|ZP_03625870.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
 gi|223897433|gb|EEF63831.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
          Length = 1463

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 159/780 (20%), Positives = 282/780 (36%), Gaps = 179/780 (22%)

Query: 199  QVVQLAYTHELPLVATNNSLFLS-EEDYEAHDVLMAVAHSTVVS------QKDRPRVTPD 251
            Q++++     LP++AT N  ++  EE+     ++ A+     ++      +  +P   P 
Sbjct: 723  QLIEVGRRAGLPVLATGNVHYIDPEEEIYREIIVRALGQGAPINWTIGNGENAQPAPLPK 782

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             + +  SEM+  F+ L E+L   + I    +        +L RF     +D+Q  +  +L
Sbjct: 783  AHFRTTSEMLDEFAFLGESLAREIVITNPNA--------MLDRF-----EDVQVVK-TDL 828

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                +   E  +A+    K +             R++ EL  I    F+  +L     + 
Sbjct: 829  YTPYIEKAEETVAELTYQKAFEIYGNPLPDIIDLRIEKELTSILGNGFAVIYLASQMLVH 888

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------RFSLL 403
             + +    VG  RGS   S  A  + IT+++P+                       F L 
Sbjct: 889  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSYGSGFDLP 947

Query: 404  -------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                               FE FL  D   +PD D++F  D +      V++ +G E   
Sbjct: 948  DKDCEKCGTKYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEENAF 1007

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V R  +  Y +  R                              
Sbjct: 1008 RAGTVGTVAAKTAYGFV-RGYERDYGKFYR------------------------------ 1036

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV--------- 555
            D  V+RL   +    G+ R    H  GI++         P Y DV    PV         
Sbjct: 1037 DVEVERL---AAGAAGVKRTTGQHPGGIIV--------FPDYMDVYDFTPVQYPADDVTA 1085

Query: 556  ----TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
                T FN   I++  ++K D LG    T+++K  D        +D   IP DD     L
Sbjct: 1086 SWQTTHFNFHDIDE-NVLKLDILGHDDPTMVRKLQDLSG-----IDPQTIPADDKGVMAL 1139

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
             +    LG+   E  G    + G+       +  +V   +P     ++  +   +G +  
Sbjct: 1140 FSGTEILGV-TPEQIGTPTGMLGIPEFGTNFVRGMVEETKPTTFSELLQLSGLSHGTDVW 1198

Query: 672  V-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            + +   LI   +     VI  ++ +M     A L    + +  + +R+ +  KI EE   
Sbjct: 1199 LGNAQDLIKAGIANLSTVIGCRDDIMVYLMHAGLPPKMAFNIMERVRKGLWLKISEE--- 1255

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV-- 785
            ++  +I     N +         E   K   Y F K+HAAAY +++ + A+ K H+P+  
Sbjct: 1256 ERNGYIQAMKDNKVPDWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPLYY 1310

Query: 786  ----------EFLAASMTLEMDNVE------KIKKFCQDARQF--NIQIMPPSVN----- 822
                       F  A+M+  +D V+       +KK   +A     ++      VN     
Sbjct: 1311 YCAYFSIRAKAFDLATMSGGLDKVKAKMEEIALKKKNNEASNVEQDLYTTLELVNEMLER 1370

Query: 823  -----------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                       +   DF + DN +     A+ G+G   A+ ++ A A+  F S  +   R
Sbjct: 1371 GFKFGKLDLYKSHATDFLIEDNTLIPPFVAMDGLGENVAKQVVAARAEGEFLSKTELRKR 1430


>gi|322375786|ref|ZP_08050297.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. C300]
 gi|321279054|gb|EFX56096.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. C300]
          Length = 1463

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 192/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 863  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 921

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 922  PHYVCGQCQYSEFITDGSYGSGFDMPNKDCPKCGHKLSKNGQDIPFETFLGFDGDKVPDI 981

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 982  DLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1036

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1037 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1063

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1064 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1118

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+   E  G    + G+       +  
Sbjct: 1119 QDLSG-----IDPNEIPMDDEGVMALFSGTDVLGV-TPEQIGTPTGMLGIPEFGTNFVRG 1172

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQL 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M     A L
Sbjct: 1173 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGL 1232

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I     N + +       E   K   Y F
Sbjct: 1233 EPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMKANKVPEWY----IESCGKIK-YMF 1284

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1285 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|5912317|emb|CAB56101.1| DNA polymerase III alpha subunit [Rickettsia rickettsii]
          Length = 360

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 100/204 (49%), Gaps = 13/204 (6%)

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I ++L AIKGV     + +  E  A   F S+ DF  R+  K +N ++LE+L+ +G  D 
Sbjct: 44   IIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDE 103

Query: 894  FGYSRMQLLQSLDNIQKYAQ-WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
               +R+QLL S+  +  Y+  + E+  +N+   I   +  + S  I +     + +++ F
Sbjct: 104  LHDNRLQLLSSIPKLLSYSTAYHEEQESNQFSLI---KVSSLSPTILVSSDYADKNTLAF 160

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTR 1010
              E   +G + S HPL  Y+ I  ++ I    +    +    N + LA ++   Q+K +R
Sbjct: 161  Y-EFEAMGLFISNHPLTEYQEIFSRLNILNTADLHNNLPDGTNRVNLAGVI---QKKDSR 216

Query: 1011 KGSRIGWVT--FSEPAKEYEANFF 1032
              +R  +VT   S+P   +E + F
Sbjct: 217  MSARGRFVTLVLSDPENIFELSIF 240


>gi|327390689|gb|EGE89029.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae GA04375]
          Length = 1463

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 192/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 863  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 921

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 922  PHYVCGQCQYSEFITDGSYGSGFDMPNKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDI 981

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 982  DLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1036

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1037 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1063

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1064 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1118

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+   E  G    + G+       +  
Sbjct: 1119 QDLSG-----IDPNEIPMDDEGVMALFSGTDVLGV-TPEQIGTPTGMLGIPEFGTNFVRG 1172

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQL 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M     A L
Sbjct: 1173 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGL 1232

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I     N + +       E   K   Y F
Sbjct: 1233 EPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMKANKVPEWY----IESCGKIK-YMF 1284

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1285 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|5912325|emb|CAB56082.1| DNA polymerase III alpha subunit [Rickettsia montanensis]
          Length = 360

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 100/204 (49%), Gaps = 13/204 (6%)

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I ++L AIKGV     + +  E  A   F S+ DF  R+  K +N ++LE+L+ +G  D 
Sbjct: 44   IIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDE 103

Query: 894  FGYSRMQLLQSLDNIQKYA-QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
               +R+QLL S+  +  Y+  + E+  +N+   I   +  + S  I +     + +++ F
Sbjct: 104  LHDNRLQLLSSIPKLLSYSTSYHEEQESNQFSLI---KVSSLSPTILVSSDYADKNTLAF 160

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTR 1010
              E   +G + S HPL  Y+ I  ++ I    +    +    N + LA ++   Q+K +R
Sbjct: 161  Y-EFEAMGLFISNHPLTEYQEIFSRLNILNTADLHNNLPDGTNRVNLAGVI---QKKDSR 216

Query: 1011 KGSRIGWVT--FSEPAKEYEANFF 1032
              +R  +VT   S+P   +E + F
Sbjct: 217  MSARGRFVTLVLSDPENIFELSIF 240


>gi|315611914|ref|ZP_07886833.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296]
 gi|315316092|gb|EFU64125.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296]
          Length = 1463

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 192/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 863  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 921

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 922  PHYVCGQCQYSEFITDGSYGSGFDMPNKDCPKCGHKLSKNGQDIPFETFLGFDGDKVPDI 981

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 982  DLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1036

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1037 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1063

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1064 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1118

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+   E  G    + G+       +  
Sbjct: 1119 QDLSG-----IDPNEIPMDDEGVMALFSGTDVLGV-TPEQIGTPTGMLGIPEFGTNFVRG 1172

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQL 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M     A L
Sbjct: 1173 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGL 1232

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I     N + +       E   K   Y F
Sbjct: 1233 EPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMKANKVPEWY----IESCGKIK-YMF 1284

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1285 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|306830212|ref|ZP_07463396.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249]
 gi|304427738|gb|EFM30834.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249]
          Length = 1463

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 192/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 863  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 921

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 922  PHYVCGQCQYSEFITDGSYGSGFDMPNKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDI 981

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 982  DLNFSGEDQPSAHLDVRDIFGSEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1036

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1037 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1063

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1064 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1118

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+   E  G    + G+       +  
Sbjct: 1119 QDLSG-----IDPNEIPMDDEGVMALFSGTDVLGV-TPEQIGTATGMLGIPEFGTNFVRG 1172

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQL 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M     A L
Sbjct: 1173 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGL 1232

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I     N + +       E   K   Y F
Sbjct: 1233 EPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMKANKVPEWY----IESCGKIK-YMF 1284

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1285 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|289167137|ref|YP_003445404.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6]
 gi|288906702|emb|CBJ21536.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6]
          Length = 1463

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 192/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 863  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 921

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 922  PHYVCGQCQYSEFITDGSYGSGFDMPNKDCPKCGHKLSKNGQDIPFETFLGFDGDKVPDI 981

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 982  DLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1036

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1037 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1063

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1064 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1118

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+   E  G    + G+       +  
Sbjct: 1119 QDLSG-----IDPNEIPMDDEGVMALFSGTDVLGV-TPEQIGTPTGMLGIPEFGTNFVRG 1172

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQL 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M     A L
Sbjct: 1173 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGL 1232

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I     N + +       E   K   Y F
Sbjct: 1233 EPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMKANKVPEWY----IESCGKIK-YMF 1284

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1285 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|307710886|ref|ZP_07647313.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis SK321]
 gi|307617331|gb|EFN96504.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis SK321]
          Length = 1463

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 192/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 863  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 921

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 922  PHYVCGQCQYSEFITDGSYGSGFDMPNKDCPKCGNKLSKNGQDIPFETFLGFDGDKVPDI 981

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 982  DLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1036

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1037 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1063

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1064 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1118

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+   E  G    + G+       +  
Sbjct: 1119 QDLSG-----IDPNEIPMDDEGVMALFSGTDVLGV-TPEQIGTPTGMLGIPEFGTNFVRG 1172

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQL 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M     A L
Sbjct: 1173 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGL 1232

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I     N + +       E   K   Y F
Sbjct: 1233 EPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMKANKVPEWY----IESCGKIK-YMF 1284

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1285 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|163791589|ref|ZP_02185990.1| DNA polymerase III, alpha subunit, Gram-positive type [Carnobacterium
            sp. AT7]
 gi|159873138|gb|EDP67241.1| DNA polymerase III, alpha subunit, Gram-positive type [Carnobacterium
            sp. AT7]
          Length = 1395

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 165/808 (20%), Positives = 300/808 (37%), Gaps = 175/808 (21%)

Query: 76   DIDMQDNL-KMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            DI  QD L + T +G       P    ++ +T  G + L +L+S   ++D   ++ R+  
Sbjct: 594  DIHFQDQLNEHTGEGDAYKRARPFHATIIATTQTGLKNLFKLISSS-MVDYFYRTARLPR 652

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLFGDRLYVNL 186
            S L ++  EGLI+ T  S G +  A        A+ +   +       K+++   +   L
Sbjct: 653  SELIKL-REGLIIGTACSQGEVFEAMMQKGFDEAKNKAKFYDYIEVMPKEVYAPLIEQEL 711

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDR 245
             +           +V++     +P+VAT N  +L+ ED     +L+ +   +  +++ + 
Sbjct: 712  VKDESDLEEIIRNLVKIGEDLNIPVVATGNVHYLNPEDSIYRKILINSQGGANPLNRSEL 771

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            P V    + +  +EM+  FS L E     + +      +  V   I P   +     I+ 
Sbjct: 772  PEV----HFRTTTEMLETFSFLGEETAQQIVVKNTNKIVDMVDDAITPIKTDLYTPKIEG 827

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADFI 364
              E+E+R       ++   +     G    D   +R++ ELN I    FS  +LI    +
Sbjct: 828  -SEDEIR-------QLSYDEAHRLYGNPLPDIIEKRIEKELNSIIGNGFSVIYLISQKLV 879

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFS-------------- 401
              +  +   VG  RGS   S  A    IT+++P+         ++S              
Sbjct: 880  HKSMSDGYLVG-SRGSVGSSFVATMTGITEVNPMPPHYSCPKCQYSEFFTDGSVGSGYDL 938

Query: 402  ------------------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                              + FE FL      +PD D++F  D + +   Y +  +G E V
Sbjct: 939  PDKACPECGARLHKDGHDIPFETFLGFYGDKVPDIDLNFSGDYQSKAHNYTKELFGEEYV 998

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
             +  T G++  + A   V       Y + + L                           L
Sbjct: 999  FRAGTIGTVADRTAFGYV-----KGYERDNNL--------------------------NL 1027

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------- 555
                +DRL + S    G+ R    H  GI++        +P Y DV    P+        
Sbjct: 1028 RAAEIDRLAKGST---GVKRTTGQHPGGIIV--------IPDYMDVYDFTPIQFPADAQD 1076

Query: 556  -----TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
                 T F+   I    ++K D LG    T+++   D        VD   IP DD E   
Sbjct: 1077 SEWKTTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDLSG-----VDPKTIPTDDPEVMK 1130

Query: 611  LL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            +               +  GTLGI +  +  +R  LE   P    +++ +  L     + 
Sbjct: 1131 IFGGTEVLGVTPEQIQSKTGTLGIPEFGTRFVRGMLEETLPTTFAELLQISGLSHGTDV- 1189

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQG----VIIYQEQVMQIAQLLSGYSLSEADV 712
                        E+++ ++   D  L E  G    +++Y    +    +  G +    + 
Sbjct: 1190 -------WLGNAEELIRVN---DIPLSEVIGCRDDIMVY----LIHNGMEDGLAFKIMES 1235

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +R+  GK I +  D QK        +  I   + +           Y F K+HAAAY ++
Sbjct: 1236 VRK--GKGIPD--DWQKAMRDENIPEWYIDSCLKIK----------YMFPKAHAAAYVLM 1281

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            + + A+ K H+P+ + AA  ++  D+ +
Sbjct: 1282 ALRVAYYKVHFPILYYAAYFSVRADDFD 1309


>gi|307705682|ref|ZP_07642529.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis SK597]
 gi|307620762|gb|EFN99851.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis SK597]
          Length = 1463

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 192/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 863  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 921

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 922  PHYVCGQCQYSEFITDGSYGSGFDMPNKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDI 981

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 982  DLNFSGEDQASAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1036

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1037 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1063

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1064 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1118

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+   E  G    + G+       +  
Sbjct: 1119 QDLSG-----IDPNEIPMDDEGVMALFSGTDVLGV-TPEQIGTPTGMLGIPEFGTNFVRG 1172

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQL 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M     A L
Sbjct: 1173 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGL 1232

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I     N + +       E   K   Y F
Sbjct: 1233 EPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMKANKVPEWY----IESCGKIK-YMF 1284

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1285 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|313638095|gb|EFS03362.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            seeligeri FSL S4-171]
          Length = 1444

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 170/811 (20%), Positives = 294/811 (36%), Gaps = 182/811 (22%)

Query: 76   DIDMQDNLK-MTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            DID  D+L     +G       P    +   TA G + L +L++ M  ++   +  RI  
Sbjct: 596  DIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT-MSNINYFYRVPRIPR 654

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLFGDRLYVNL 186
            S L ++  EGLI+ T  S G +  A      Q AEK    +       K ++   +   L
Sbjct: 655  SQLNKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVADFYDFIEIQPKPVYAPLIEREL 713

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R           +V++      P+VAT N  +    D     +L+   +S   +     
Sbjct: 714  VRDEKALEEILKNIVRVGEKAGKPVVATGNVHYKDPVDKIYRKILI---YSQGGANPLNR 770

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               PD + ++  EM+  F+ L E          +   ++  ++ ++  +IE       K 
Sbjct: 771  AELPDVHFRSTDEMLKEFAFLGE---------EKAKEVVVTNSNLVVDWIED-----LKP 816

Query: 307  EENELRNKAVAGLE--VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             ++EL    + G E  VR    ++A   + +   +    RL+ EL  I    F+  +LI 
Sbjct: 817  IKDELYTPKIDGAEDEVRNMSYSMAHQLYGETLPEIVEARLEKELKSIIGHGFAVIYLIS 876

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL----------------- 403
               ++ +  +   VG  RGS   S  A    IT+++PL    L                 
Sbjct: 877  HKLVKKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKHSEFFDDGSIGS 935

Query: 404  ------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                    FE FL      +PD D++F  D +     Y +  +G
Sbjct: 936  GFDLPDKDCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFG 995

Query: 440  HERVAQIITFGSLQAKAA---LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             + V +  T G++  K A   +R+  R + M                             
Sbjct: 996  EDYVFRAGTIGTVAEKTAFGYVRNYEREMNM----------------------------- 1026

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV- 555
                  +    +DRL+       G+ R    H  GI++        +P Y DV    PV 
Sbjct: 1027 -----TIRGAEIDRLV---AGCTGVKRTTGQHPGGIIV--------IPDYMDVYDFTPVQ 1070

Query: 556  ------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
                        T F+   I    ++K D LG    T ++   D        +D   IP 
Sbjct: 1071 FPADATDSEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDLSG-----IDPKTIPT 1124

Query: 604  DDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            DD +   L               +  GTLGI +  +  +RQ LE  +P    +++ +  L
Sbjct: 1125 DDPDVMKLFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGL 1184

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
                   ++ + N  +  K K   + P +     +    +IYQ        L S  +   
Sbjct: 1185 SHG---TDVWLGNAEELIKNKTCEL-PDVIGCRDDIMVFLIYQ-------GLESSLAFKI 1233

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             + +R+  GK + EEM++             ++  + +   E   K   Y F K+HAAAY
Sbjct: 1234 MESVRK--GKGLTEEMEEAM-----------MANKVPLWYIESCKKIK-YMFPKAHAAAY 1279

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             +++ + A+ K H+P+ F A   T+  D+ +
Sbjct: 1280 VLMAVRIAYFKVHHPLFFYATYFTVRADDFD 1310


>gi|269115238|ref|YP_003303001.1| DNA polymerase III polC-type [Mycoplasma hominis]
 gi|268322863|emb|CAX37598.1| DNA polymerase III polC-type [Mycoplasma hominis ATCC 23114]
          Length = 1437

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 137/662 (20%), Positives = 240/662 (36%), Gaps = 178/662 (26%)

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +R++ ELN I +  +S  + I    ++ + ++   VG  RGS   S+ A    I++++PL
Sbjct: 839  KRIEKELNPIIKYGYSVIYWISHKLVKKSNEDGYLVG-SRGSVGSSIVANLAGISEVNPL 897

Query: 399  RFSLL-----------------------------------------FERFLNPDRMSMPD 417
                L                                         FE FL  +   +PD
Sbjct: 898  PPHYLCKNCKYFEWNSNKEIYSGWDLPDKHCPNCNSILSKDGHNIPFETFLGFEADKVPD 957

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  + +  +  YV+  +G     +  T  ++  K A                  CK
Sbjct: 958  IDLNFSGEYQPTIHNYVKELFGEAHTYRAGTIATVAEKTAYG---------------FCK 1002

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLAD--PSVDRLLE-ISQKLEGLYRHASTHAAGIVI 534
                               ++ E +  +  P     L+ ++ K +G+ R    H  GI+I
Sbjct: 1003 -------------------KYEEEKRGNYQPWSHLFLDFLASKTQGVKRTTGQHPGGIII 1043

Query: 535  --GDRPLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               +  +    P+     D  S    T F+   I    ++K D LG    T++ + L+ L
Sbjct: 1044 IPKEFDVEDFTPVNYPANDTESSWKTTHFDFTSIHD-NVLKLDLLGHDDPTVI-RMLETL 1101

Query: 590  AQRGVKVDLSLIPFDDHETYHLL---------------TTKGTLGIFQLESSGMRQALEG 634
                 K     IP  D E   L                 T G  G+ +  ++ +R+ L+ 
Sbjct: 1102 TNTNAKE----IPKFDAEVMKLFYTTESLKISPSDIGGETTGAYGLPEFGTNFVRKMLKK 1157

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
             QP    D+I L  L     +  DN      R  GK+ I  +    D M    +G+I + 
Sbjct: 1158 AQPRSFNDLILLSGLSHGTDVWTDNAEELVAR--GKKLIECVCCRDDIM----RGLIEWN 1211

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
             + +   Q++        + +R+  G      +  + E  +        S  +     E 
Sbjct: 1212 IEPLTAFQIM--------EKVRKGKG------LTPEWEELLK-------SHNVPEWYIES 1250

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD--NVEKIKKFCQDAR 810
            L K   Y F K+HA AY +++++ AW K +YP+ F A+  T   D  +++ +        
Sbjct: 1251 LQKIK-YMFPKAHATAYVIMAWRIAWYKLYYPLPFYASFYTNRPDAIDIQIMSSGAASVH 1309

Query: 811  QFNIQIMPPSVNT------------PCVD---------FKVGDNRIYYSLA--------- 840
            Q  I++     +T            P ++         FK+ +  +  SLA         
Sbjct: 1310 QKLIELKNRQNSTGEKLSVKEEALIPVLEITQELYARGFKIKNVDLKLSLADKWIIDEKD 1369

Query: 841  --------AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
                     + G+G T A+ I+ A  +  F S+ED  SR    K+N R++  L   G LD
Sbjct: 1370 KALIPPFNVVDGLGITVAQTIVSARKEGFFLSIEDLASRT---KVNSRIISELKKIGVLD 1426

Query: 893  CF 894
            C 
Sbjct: 1427 CL 1428


>gi|221231173|ref|YP_002510325.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669]
 gi|220673633|emb|CAR68120.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669]
          Length = 1463

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 192/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 863  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 921

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 922  PHYVCGQCQYSEFITDGSYGSGFDMPNKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDI 981

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 982  DLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1036

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1037 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1063

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1064 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1118

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+   E  G    + G+       +  
Sbjct: 1119 QDLSG-----IDPNEIPMDDEGVMALFSGTDVLGV-TPEQIGTPTGMLGIPEFGTNFVRG 1172

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQL 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M     A L
Sbjct: 1173 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGL 1232

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I     N + +       E   K   Y F
Sbjct: 1233 EPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMKANKVPEWY----IESCGKIK-YMF 1284

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1285 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|257466340|ref|ZP_05630651.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
            25563]
 gi|315917497|ref|ZP_07913737.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
            25563]
 gi|313691372|gb|EFS28207.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
            25563]
          Length = 1450

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 125/609 (20%), Positives = 227/609 (37%), Gaps = 139/609 (22%)

Query: 88   QGKTPFPT----VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG 143
            QG  P  T      +++LLV    G + L  LVS  +L   G +  R+  S L++   EG
Sbjct: 599  QGAFPVNTKKQNTRNVMLLVKDRVGLENLNRLVSDAHLYHFGNRKPRVLKSNLEKY-REG 657

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD---RYRESQV 200
            LI+    +   I+ +  F+         +  K  F D  Y+ L   + Y     Y  + +
Sbjct: 658  LIVGCSLTGHSINDSDLFHDYSTGNMERIPEKISFYD--YIELLPRQAYTENIEYNGTGL 715

Query: 201  VQ--------------LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            +               LA    + +  ++N  +L  E+ +   +L+    S +V      
Sbjct: 716  ISGNSYIEKMNQYFYDLAKEKGILVTGSSNVHYLDPEEAKIRTILL--YGSGMVHGAKAY 773

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEA------LENTVEIARRCSFILQVHAPILPRFIEKEC 300
            +     Y +   E++  FS L E       ++NT  IA +    ++V  PI   F     
Sbjct: 774  KTDNGFYFRTTGELLEEFSYLGEEAAKEILIQNTNAIAEK----IEVIKPIPDGFYPPSI 829

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D+ ++        KA      R+    +      +   +RL+ ELN I    FS  +L  
Sbjct: 830  DNAEETVREMTYEKA-----YRIYGNPL-----PEIVEKRLERELNAIIGNGFSVLYLSA 879

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  N   VG  RGS   S+ A+ + IT+++ L                      
Sbjct: 880  QKLVKKSLDNGYLVG-SRGSVGSSLVAFMMGITEVNALYPHYICTNPDCKHVEFIEREGV 938

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                +S+ FE F+  +   +PD D++F  + + E+ RY +  +G
Sbjct: 939  GIDLPEKKCPKCGQMYKRDGYSIPFEVFMGFNGDKVPDIDLNFSGEYQSEIHRYCEELFG 998

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQ---MPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             E V +  T  +L  K A   V +  +   M  SQ +                       
Sbjct: 999  KENVFKAGTISTLAEKNAAGYVKKYFEDNGMSISQAE----------------------- 1035

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRS 551
                          ++ +++K EG  +    H  G+V+   D  + +  P+ +   D  S
Sbjct: 1036 --------------VMRLAKKCEGAKKTTGQHPGGMVVVPSDHTIFEFCPVQKPANDENS 1081

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            D   T ++   +++  L+K D LG    T ++     L Q    +D+  IP  D +T  +
Sbjct: 1082 DSITTHYDYHVMDEQ-LVKLDILGHDDPTTIK-----LLQEYTGLDIYGIPLSDPDTLKI 1135

Query: 612  LTTKGTLGI 620
             ++  +LG+
Sbjct: 1136 FSSTESLGV 1144


>gi|5912329|emb|CAB56096.1| DNA polymerase III alpha subunit [Rickettsia rhipicephali]
          Length = 360

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 13/204 (6%)

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I ++L AIKGV     + +  E  A   F S+ DF  R+  K +N ++LE+L+ +G  D 
Sbjct: 44   IIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDE 103

Query: 894  FGYSRMQLLQSLDNIQKYA-QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
               +R+QLL S+  +  Y+  + E+  +N+   I   +  + S  + +     + +++ F
Sbjct: 104  LHDNRLQLLSSIPKLLSYSTSYHEEQESNQFSLI---KVSSLSPTVLVSSDYADKNTLAF 160

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTR 1010
              E   +G + S HPL  Y+ I  ++ I    +    +    N + LA ++   Q+K +R
Sbjct: 161  Y-EFEAMGLFISNHPLTEYQEIFSRLNILNTADLHNNLPDGTNRVNLAGVI---QKKDSR 216

Query: 1011 KGSRIGWVT--FSEPAKEYEANFF 1032
              +R  +VT   S+P   +E + F
Sbjct: 217  MSARGRFVTLVLSDPENIFELSIF 240


>gi|322517665|ref|ZP_08070529.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124]
 gi|322123697|gb|EFX95287.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124]
          Length = 1424

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 131/676 (19%), Positives = 258/676 (38%), Gaps = 163/676 (24%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVS------QKDRPRVTPDH 252
            ++++A   + P++AT N  +++ ED    ++++ A+    +++      +  +P   P+ 
Sbjct: 685  LIEVANRLDKPVLATGNVHYINPEDAIYREIIVRALGQGAMINRPIGKGENAKPAPLPEA 744

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            + +  +EM+  F+ L + L   + +    +   Q+          +E + ++K+      
Sbjct: 745  HFRTTNEMLDDFAFLGKDLAYKIVVTNTQAMADQI----------EEVEVVKKDLYTPFI 794

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            ++A    E ++A+   AK +             R++ EL+ I    F+  +L     +  
Sbjct: 795  DRA----EEQVAEMTYAKAFELYGNPLPDIIDLRIEKELSSILGNGFAVIYLASQMLVNR 850

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL----------------------- 403
            + +    VG  RGS   S  A  + IT+++P+    L                       
Sbjct: 851  SNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYLCPKCQHSEFITDGSYGSGFDLPD 909

Query: 404  ------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                              FE FL  D   +PD D++F  D +      V++ +G +   +
Sbjct: 910  KECSECGTEYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEQYAFR 969

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  + A   V +  +  Y++  R                              D
Sbjct: 970  AGTVGTVADRTAYGFV-KGYERDYNKFYR------------------------------D 998

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---------- 555
              VDRL   +    G+ R+   H  GIV+        +P Y DV    PV          
Sbjct: 999  AEVDRL---AMGAAGVKRNTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAA 1047

Query: 556  ---TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K  D        +D   I  DD +   L 
Sbjct: 1048 WQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG-----IDPKDIRADDPDVMKLF 1101

Query: 613  --------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
                          T+ G LGI +  ++ +R  ++   P    +++ L  L       ++
Sbjct: 1102 SGTEILGVTPEQIGTSTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHG---TDV 1158

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             + N +   KE I ++  +I         +++Y    +  A L    + +  + +R+ M 
Sbjct: 1159 WLGNAQDLIKEGIATLKTVIGC----RDDIMVY----LMHAGLDPKMAFTIMERVRKGMW 1210

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             KI EE   ++  +I    +N +         E   K   Y F K+HAAAY +++ + A+
Sbjct: 1211 LKISEE---ERNGYIQAMRENNVPDWY----IESCGKIK-YMFPKAHAAAYVMMALRVAY 1262

Query: 779  MKTHYPVEFLAASMTL 794
             K H+P+ +  A  ++
Sbjct: 1263 FKVHHPIYYYCAYFSI 1278


>gi|322386941|ref|ZP_08060565.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100]
 gi|321269223|gb|EFX52159.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100]
          Length = 1462

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 109/513 (21%), Positives = 194/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 862  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 920

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 921  PHYVCGKCQYSEFITDGSYGSGFDMPDKNCPECGHKLSKNGQDIPFETFLGFDGDKVPDI 980

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 981  DLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1035

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1036 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1062

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1063 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1117

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + IP DD     L +    LG+ + E  G    + G+       +  
Sbjct: 1118 QDLSG-----IDPNDIPMDDAGVMALFSGTDILGVTE-EQIGTPTGMLGIPEFGTNFVRG 1171

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---L 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M       L
Sbjct: 1172 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGL 1231

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I+   +N + +       E   K   Y F
Sbjct: 1232 DPKMAFTIMERVRKGLWLKISEE---ERNGYIAAMKENNVPEWY----IESCGKIK-YMF 1283

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1284 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1316


>gi|288904428|ref|YP_003429649.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus UCN34]
 gi|306830461|ref|ZP_07463631.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
            gallolyticus TX20005]
 gi|325977425|ref|YP_004287141.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
            gallolyticus ATCC BAA-2069]
 gi|288731153|emb|CBI12701.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus UCN34]
 gi|304427486|gb|EFM30588.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
            gallolyticus TX20005]
 gi|325177353|emb|CBZ47397.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
            gallolyticus ATCC BAA-2069]
          Length = 1464

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 93/425 (21%), Positives = 162/425 (38%), Gaps = 108/425 (25%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL----- 458
            FE FL  D   +PD D++F  D +      V++ +G +   +  T G++  + A      
Sbjct: 968  FETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEQYAFRAGTVGTVADRTAYGFVKG 1027

Query: 459  --RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
              RD G+    P ++V+RL                                       +Q
Sbjct: 1028 YERDYGKFY--PEAEVERL---------------------------------------AQ 1046

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWI 563
               G+ R    H  GIV+        +P Y DV    PV             T FN   I
Sbjct: 1047 GAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDLSAEWQTTHFNFHDI 1098

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL----------- 612
            ++  ++K D LG    T+++K  D        +D   IP DD +   L            
Sbjct: 1099 DE-NVLKLDILGHDDPTMIRKLQDLSG-----IDPKDIPADDPDVMALFSGTEVLGVTPE 1152

Query: 613  ---TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
               T  G LGI +  ++ +R  +E   P    +++ L  L       ++ + N +   KE
Sbjct: 1153 QIGTPTGMLGIPEFGTNFVRGMVEETHPTTFAELLQLSGLSHG---TDVWLGNAQDLIKE 1209

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I ++  +I         +++Y    +  A L    + +  + +R+ M  KI    D+++
Sbjct: 1210 GIATLKTVIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRKGMWLKIS---DEER 1258

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              +I    +N +         E   K   Y F K+HAAAY +++ + A+ K HYP+ +  
Sbjct: 1259 NGYIEAMRENNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHYPIYYYC 1313

Query: 790  ASMTL 794
            A  ++
Sbjct: 1314 AYFSI 1318


>gi|312862610|ref|ZP_07722851.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            vestibularis F0396]
 gi|311101870|gb|EFQ60072.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            vestibularis F0396]
          Length = 1464

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 131/676 (19%), Positives = 258/676 (38%), Gaps = 163/676 (24%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVS------QKDRPRVTPDH 252
            ++++A   + P++AT N  +++ ED    ++++ A+    +++      +  +P   P+ 
Sbjct: 725  LIEVANRLDKPVLATGNVHYINPEDAIYREIIVRALGQGAMINRPIGKGENAKPAPLPEA 784

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            + +  +EM+  F+ L + L   + +    +   Q+          +E + ++K+      
Sbjct: 785  HFRTTNEMLDDFAFLGKDLAYKIVVTNTQAMADQI----------EEVEVVKKDLYTPFI 834

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            ++A    E ++A+   AK +             R++ EL+ I    F+  +L     +  
Sbjct: 835  DRA----EEQVAEMTYAKAFELYGNPLPDIIDLRIEKELSSILGNGFAVIYLASQMLVNR 890

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL----------------------- 403
            + +    VG  RGS   S  A  + IT+++P+    L                       
Sbjct: 891  SNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYLCPKCQHSEFITDGSYGSGFDLPD 949

Query: 404  ------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                              FE FL  D   +PD D++F  D +      V++ +G +   +
Sbjct: 950  KECSECGTEYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEQYAFR 1009

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  + A   V +  +  Y++  R                              D
Sbjct: 1010 AGTVGTVADRTAYGFV-KGYERDYNKFYR------------------------------D 1038

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---------- 555
              VDRL   +    G+ R+   H  GIV+        +P Y DV    PV          
Sbjct: 1039 AEVDRL---AMGAAGVKRNTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAA 1087

Query: 556  ---TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K  D        +D   I  DD +   L 
Sbjct: 1088 WQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG-----IDPKDIRADDPDVMKLF 1141

Query: 613  --------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
                          T+ G LGI +  ++ +R  ++   P    +++ L  L       ++
Sbjct: 1142 SGTEILGVTPEQIGTSTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHG---TDV 1198

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             + N +   KE I ++  +I         +++Y    +  A L    + +  + +R+ M 
Sbjct: 1199 WLGNAQDLIKEGIATLKTVIGC----RDDIMVY----LMHAGLDPKMAFTIMERVRKGMW 1250

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             KI EE   ++  +I    +N +         E   K   Y F K+HAAAY +++ + A+
Sbjct: 1251 LKISEE---ERNGYIQAMRENNVPDWY----IESCGKIK-YMFPKAHAAAYVMMALRVAY 1302

Query: 779  MKTHYPVEFLAASMTL 794
             K H+P+ +  A  ++
Sbjct: 1303 FKVHHPIYYYCAYFSI 1318


>gi|294155324|ref|YP_003559708.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli
            MP145]
 gi|291600469|gb|ADE19965.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli
            MP145]
          Length = 1447

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 136/644 (21%), Positives = 234/644 (36%), Gaps = 159/644 (24%)

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             R+  E+N I +  +   + I    ++ +  N   VG  RGS   S+ A    IT+++PL
Sbjct: 851  NRIKKEINPILKYGYDVIYWISHKLVKKSIDNGYLVG-SRGSVGSSLVATLSGITEVNPL 909

Query: 399  ----------RFSLL-------------------------------FERFLNPDRMSMPD 417
                      +F L+                               FE FL  +   +PD
Sbjct: 910  PPHFVCPKCKKFELIDNLKISSGFDLDDKECEKCKITMDKDGQTIPFETFLGFEADKVPD 969

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  D + E+   ++  +G     +  T  +  +K +   +  AL            
Sbjct: 970  IDLNFSGDYQGEIHNEIRRLFGENHTFRAGTIATAASKTSYGYIKNAL------------ 1017

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                            D+S     +++   VD L  I   +EG+ R    H  GI+I  +
Sbjct: 1018 ----------------DESG---KKISSTFVDYLTSI---IEGVKRGTGQHPGGIIIIPK 1055

Query: 538  PLS--QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLG---------LKTLTLLQ 583
              S     P+     DV SD   T F+   I    ++K D LG         L+ LT + 
Sbjct: 1056 EYSVEDFTPINFPGNDVESDWKTTHFDFHAIHD-NVLKLDILGHDDPTAIKMLERLTGVD 1114

Query: 584  KSLDFLAQRGVKVDLSLIP--FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
               D   +    + +   P     + +       G LGI +  +  +R+ LE  +     
Sbjct: 1115 VKKDIPKKDKKVMSIFTSPAALGINSSQIGGEPTGALGIPEFGTPFVRKMLEQAKAKSFA 1174

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            D+I+L  L       ++ + N +   KEK       ID ++     +++Y    +    +
Sbjct: 1175 DLISLSGLSHGT---DVWLNNAQSLIKEK----GHTIDQVISCRDDIMVY----LIKHGV 1223

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             S Y+    + +R+  GK I EE ++          KN I +    ++     K   Y F
Sbjct: 1224 DSLYAFKIMEQVRK--GKGITEEQEQD-------LRKNKIPQWYIDSM-----KKIKYMF 1269

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             K+HA AY +++++ AW K + P+E+ A   T   D V  +   C+D +   I      +
Sbjct: 1270 PKAHATAYVLMAWRIAWFKVYKPLEYYATFFTTRCD-VFDVANMCEDFKITKINNRIAEI 1328

Query: 822  NTPCVD-----------------------FKVGDNRIYYSL-----------------AA 841
            N+  ++                       F +    I  SL                 +A
Sbjct: 1329 NSKPINEISAKEANLIPVLEIARELYARGFTISKISITKSLEKEWVIDYQNKTIIPPFSA 1388

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            +  +G +TA  I +A  +KPF S EDF +R    K      E L
Sbjct: 1389 LDSLGDSTAYSITQARKEKPFISKEDFANRTSVSKTQYAEFEKL 1432


>gi|306832698|ref|ZP_07465835.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338]
 gi|304425154|gb|EFM28283.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338]
          Length = 1464

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 93/425 (21%), Positives = 162/425 (38%), Gaps = 108/425 (25%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL----- 458
            FE FL  D   +PD D++F  D +      V++ +G +   +  T G++  + A      
Sbjct: 968  FETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEQYAFRAGTVGTVADRTAYGFVKG 1027

Query: 459  --RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
              RD G+    P ++V+RL                                       +Q
Sbjct: 1028 YERDYGKFY--PEAEVERL---------------------------------------AQ 1046

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWI 563
               G+ R    H  GIV+        +P Y DV    PV             T FN   I
Sbjct: 1047 GAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDLSAEWQTTHFNFHDI 1098

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL----------- 612
            ++  ++K D LG    T+++K  D        +D   IP DD +   L            
Sbjct: 1099 DE-NVLKLDILGHDDPTMIRKLQDLSG-----IDPKDIPADDPDVMALFSGTEVLGVTPE 1152

Query: 613  ---TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
               T  G LGI +  ++ +R  +E   P    +++ L  L       ++ + N +   KE
Sbjct: 1153 QIGTPTGMLGIPEFGTNFVRGMVEETHPTTFAELLQLSGLSHG---TDVWLGNAQDLIKE 1209

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I ++  +I         +++Y    +  A L    + +  + +R+ M  KI    D+++
Sbjct: 1210 GIATLKTVIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRKGMWLKIS---DEER 1258

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              +I    +N +         E   K   Y F K+HAAAY +++ + A+ K HYP+ +  
Sbjct: 1259 NGYIEAMRENNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHYPIYYYC 1313

Query: 790  ASMTL 794
            A  ++
Sbjct: 1314 AYFSI 1318


>gi|329769168|ref|ZP_08260588.1| DNA polymerase III [Gemella sanguinis M325]
 gi|328839387|gb|EGF88965.1| DNA polymerase III [Gemella sanguinis M325]
          Length = 1449

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 183/913 (20%), Positives = 331/913 (36%), Gaps = 215/913 (23%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY--LLDQGKQSVRICL 133
            +ID + +LK+ ++    FP      +LV  A+G + L  +VS      L  GK +  I  
Sbjct: 603  EIDEKIDLKLAHKRSRTFPCS----ILVKNAKGLKDLFRIVSYSCTDYLSSGKPT--IPR 656

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAF--FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
            S L++   + LI    GS    +  F    NS +   + ++ F        Y+ +Q    
Sbjct: 657  SLLEQYRKDLLI----GSGNSENEVFEELLNSKEDKVEGIIDFYD------YIEIQPKNH 706

Query: 192  YDRYRESQ--------------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            Y  +  S+              ++ +A   +  +VAT +  +L E  +    +L     S
Sbjct: 707  YHSFIRSERITDEAELEELLKKLIDIAKKKDKIVVATGDCYYLDEYQHVYRQILRLTVKS 766

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL--ENTVEIARRCSFILQVHAPILPRF 295
               ++  +P  T         EM++ FS L E L  E  ++   + S ++++  P+    
Sbjct: 767  NPGARDIKPMAT----FLTTEEMLNEFSFLDEKLREEIVIDNTHKISDLIELVVPL---- 818

Query: 296  IEKECDDIQKEEENELRNKAVAGL--EVRLAQGAIAKGYHAQDY----RQRLDFELNVIA 349
                        +N+L    + G   EVR    ++A   +         +RL+ EL  I 
Sbjct: 819  ------------KNKLYTPNIEGAADEVRDLSYSMAHKIYGDKLPEIVEKRLEKELASII 866

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------- 399
               FS  +LI    ++ +  +   VG  RGS   S+ A  + IT+++PL           
Sbjct: 867  GNGFSVVYLISHKLVKKSLDDGYLVG-SRGSVGSSLVATMMEITEVNPLAPHYVCPKCKH 925

Query: 400  ------------FSLL-------------------FERFLNPDRMSMPDFDIDFCQDRRD 428
                        F L                    FE FL  +   +PD D++F  + + 
Sbjct: 926  SEFFLNAEYASGFDLPNKNCPHCDVKMIKDGQDIPFETFLGFNGDKVPDIDLNFSGEYQA 985

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
                + +  +G + V +  T  ++  K A      +    Y + + +             
Sbjct: 986  TAHNFTKEIFGEDYVYRAGTISTVAEKTAY-----SFTRDYYEKNEI------------- 1027

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY 546
                       E R  D  ++R   I+   EG  R    H  GI++   D  +    P  
Sbjct: 1028 -----------EKRSID--IER---IASGCEGSKRTTGQHPGGILVVPNDMDIFDFTPYQ 1071

Query: 547  ---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
                D  S    T F+   I    ++KFD LG    T+++K  D        +D+S    
Sbjct: 1072 YPADDETSPWRTTHFDFHSIHD-NILKFDILGHDDPTMIRKLQDLSGIEPKTIDVS---- 1126

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D E   + +T   LG+ + E         G+       +I ++   +P     +V  + 
Sbjct: 1127 -DPEVMGIFSTVEALGVTR-EQVDSASGTFGIPEFGTNFVIQMLDDTKPTTYSELVQISG 1184

Query: 664  RKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGK 719
              +G +  + +   LI     E + VI  ++ +M     A L  G S    + +R+  GK
Sbjct: 1185 LSHGTDVWLGNAQELIKNGTCELKDVIGCRDDIMVYLIHAGLEEGLSFKIMESVRK--GK 1242

Query: 720  KIKEEMDKQ------KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
             + E+ +K        E +I    K                    Y F K+HA AY +++
Sbjct: 1243 GLTEDFEKAMRDNDVPEWYIDSCKK------------------IKYMFPKAHACAYVLMA 1284

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIKKF-CQDARQFNIQIMPP 819
             + AW K H P+ +  A  ++   + +             KI++   +D  +   +    
Sbjct: 1285 LRIAWFKVHQPLTYYCAYYSVRASDFDIITVVKGEKSLKAKIQEIKTKDKNEVTAKDKDA 1344

Query: 820  SVN---------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
             V+                     +   D+ +  N +    + + G+G   A  I++A  
Sbjct: 1345 LVSYEIANEMLERGFAFSKVDLEKSESHDYIIDGNTLIPPFSIVPGLGDNVANKIVQARK 1404

Query: 859  DKPFDSLEDFCSR 871
            +KPF S+EDF  R
Sbjct: 1405 EKPFLSIEDFSKR 1417


>gi|257452473|ref|ZP_05617772.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
 gi|317059014|ref|ZP_07923499.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
 gi|313684690|gb|EFS21525.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
          Length = 1450

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 125/612 (20%), Positives = 227/612 (37%), Gaps = 145/612 (23%)

Query: 88   QGKTPFPT----VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG 143
            QG  P  T      +++LLV    G + L  LVS  +L   G +  R+  S L++   EG
Sbjct: 599  QGAFPVNTKKQNTRNVMLLVKDRVGLENLNRLVSDAHLYHFGNRKPRVLKSNLEKY-REG 657

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD---RYRESQV 200
            LI+    +   I+ +  F+         +  K  F D  Y+ L   + Y     Y  + +
Sbjct: 658  LIVGCSLTGHSINDSDLFHDYSTGNVERIPKKISFYD--YIELLPRQAYTENIEYNGTGL 715

Query: 201  VQ--------------LAYTHELPLVATNNSLFLSEEDYEAHDVLM---AVAHSTVVSQK 243
            +               LA    + +  ++N  +L  E+ +   +L+    + H     + 
Sbjct: 716  ISGNSYIEKMNQYFYDLAKEKGILVTGSSNVHYLDPEEAKIRTILLYGSGMVHGAKAYKT 775

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEA------LENTVEIARRCSFILQVHAPILPRFIE 297
            D        Y +   E++  FS L E       ++NT  IA +    ++V  PI   F  
Sbjct: 776  DN-----GFYFRTTGELLEEFSYLGEEAAKEILIQNTNAIAEK----IEVIKPIPDGFYP 826

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               D+ ++        KA      R+    +      +   +RL+ ELN I    FS  +
Sbjct: 827  PSIDNAEETVREMTYEKA-----YRIYGNPL-----PEIVEKRLERELNAIIGNGFSVLY 876

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            L     ++ +  N   VG  RGS   S+ A+ + IT+++ L                   
Sbjct: 877  LSAQKLVKKSLDNGYLVG-SRGSVGSSLVAFMMGITEVNALYPHYICTNPDCKHVEFIER 935

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                   +S+ FE F+  +   +PD D++F  + + E+ RY + 
Sbjct: 936  EGVGIDLPEKKCPKCGQMYKRDGYSIPFEVFMGFNGDKVPDIDLNFSGEYQSEIHRYCEE 995

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQ---MPYSQVDRLCKLIPNDPAHPVSLQAIA 493
             +G E V +  T  +L  K A   V +  +   M  SQ +                    
Sbjct: 996  LFGKENVFKAGTISTLAEKNAAGYVKKYFEDNGMSISQAE-------------------- 1035

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---D 548
                             ++ +++K EG  +    H  G+V+   D  + +  P+ +   D
Sbjct: 1036 -----------------VMRLAKKCEGAKKTTGQHPGGMVVVPSDHTIFEFCPVQKPAND 1078

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
              SD   T ++   +++  L+K D LG    T ++     L Q    +D+  IP  D +T
Sbjct: 1079 ENSDSITTHYDYHVMDEQ-LVKLDILGHDDPTTIK-----LLQEYTGLDIYEIPLSDPDT 1132

Query: 609  YHLLTTKGTLGI 620
              + ++  +LG+
Sbjct: 1133 LKIFSSTESLGV 1144


>gi|296110428|ref|YP_003620809.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc
            kimchii IMSNU 11154]
 gi|295831959|gb|ADG39840.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc
            kimchii IMSNU 11154]
          Length = 1437

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 187/918 (20%), Positives = 329/918 (35%), Gaps = 231/918 (25%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             LLV  A G + L +LVSR  + D   +  RI  S L +   EGLI+ TG +SG +    
Sbjct: 613  TLLVQNAVGLKNLYKLVSRSNI-DFFARVPRIPRSILNQY-REGLIIGTGDTSGDVIMTL 670

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVV--------------QLAY 205
                 + A K+   +        Y+ +Q    Y    ES++V               +  
Sbjct: 671  IEKGREEALKKAKYYD-------YIEIQPTANYAPMIESELVANETKLHDILKEMVSIGE 723

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR---VTPDHYLKNRSEMVS 262
            T + P+V T +  + + ED    D+L+A       +Q   P+     P+ Y +    +++
Sbjct: 724  TLDKPVVVTGDVKYTNPEDKIYRDILIA-------TQPGNPQNRTALPELYFRTTQALLT 776

Query: 263  IFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             FS +         ++NT  +A     I  + +   P  I    D        EL ++ +
Sbjct: 777  DFSFMGNDVAKKIVIDNTHIVADMLEAITPLKSGSYPPNIPSAGD--------ELTSRTL 828

Query: 317  AGLEVRLAQGAIAKGYHAQDY----RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                      A AK ++        + R+D EL  I    F+ +++I    ++ + K+  
Sbjct: 829  ----------ATAKKWYGDPLPSVIQSRIDQELQAIIGNGFAPHYMISQRLVEKSNKDGY 878

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLR----------FSLL------------------- 403
             VG  RGS   S  A    IT+++P            F L                    
Sbjct: 879  LVG-SRGSVGSSFVATMSGITEVNPFAPHYRSAHGDYFELADPKIYESGYDLPDKADPNH 937

Query: 404  -------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
                         FE F+      +PD D++F  D +     Y++  +G   V +  T  
Sbjct: 938  PGEMLIGDGQNIPFETFMGFKGDKVPDIDLNFSGDYQPIAHNYMKVLFGEHNVYRAGTIA 997

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            ++  K A                                  +    R  E +     V+R
Sbjct: 998  TVAEKTA-------------------------------FGYVKGYERDHEKQYRGAEVER 1026

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPM---YRDVRSDLPVTQFNMKWIEK 565
            L   +Q + G+ R    H  GI+I  R   +    P+     D +S    T  +   I  
Sbjct: 1027 L---AQGVTGVKRTTGQHPGGILIVPREYEVYDFTPVQYPADDQKSLWQTTHMDYHAIHD 1083

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT----------- 614
              L+K D LG    T+++   D        +D   IP +D     L T+           
Sbjct: 1084 -NLLKMDILGHDDPTMVRTLKDMSG-----IDPQSIPANDPGVLSLFTSPKALGVTEDQI 1137

Query: 615  ---KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                GTLG+ +  +S +R  LE  QP    +++ +  L     +               +
Sbjct: 1138 FSKTGTLGLPEFGTSFVRGMLEETQPHTYSELLQISGLSHGTDV--------------WL 1183

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS-GYSLSEA-DVLRRA-MGKKIKEEMDKQ 728
             + + LI+        VI  ++++M    L++ G+  ++A +V+ +   GK I +    Q
Sbjct: 1184 GNANELIENGTATIGTVIGTRDKIM--TDLINWGFPAADAFNVMEKVRKGKGITDAYQAQ 1241

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
                         +K     I  +L     Y F ++HAAAY +++ + A+ K ++P  + 
Sbjct: 1242 LRE----------AKIPEWYIQSMLK--IKYMFPRAHAAAYVLMALRIAYFKVYFPTIYY 1289

Query: 789  AASMTLEMDN----------------VEKIKKFCQDAR----------QFNIQIMPPSVN 822
            A   ++  D                 ++KI+    DA           +   + +   + 
Sbjct: 1290 ATYFSVRADQFDIVAMSRGKNATKEAMKKIRTLGNDATVGDKNLLTVLEMANEALERGIT 1349

Query: 823  TPCVD--------FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
               VD        + +    +    +A+  +G   A+ I+ A  DKPF S ED   R   
Sbjct: 1350 FSMVDLYKSEASEWVIDGETLIPPFSAVPSLGDNVAKQIIVARQDKPFLSKEDLKKR--- 1406

Query: 875  KKLNRRVLESLVFAGALD 892
             K+++ V+E L     LD
Sbjct: 1407 GKVSQTVIEYLSRNSVLD 1424


>gi|291563198|emb|CBL42014.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing
            bacterium SS3/4]
          Length = 1376

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 135/658 (20%), Positives = 243/658 (36%), Gaps = 138/658 (20%)

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++V L      P+ AT +  F+  +D     +LM     + +  KD     P  +L+   
Sbjct: 716  KIVSLGEQFNKPVCATCDVHFMDPDDAIYRKILM-----SGMGFKDADEQAP-LFLRTTE 769

Query: 259  EMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            EM++ F  L         + NT  IA  C  I  V     P  I+K  + ++    N   
Sbjct: 770  EMLAEFEYLGSDKCYEVVVTNTRMIADMCEPIAPVRPDKCPPVIDKSDETLR----NICY 825

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            N+A       L +  +           RL+ EL+ I    F+  ++I    +  + ++  
Sbjct: 826  NRAHEMYGENLPKIVV----------DRLERELHSIISNGFAVMYIIAQKLVWKSNEDGY 875

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLR--------------------------------- 399
             VG  RGS   S  A    IT+++PL                                  
Sbjct: 876  LVG-SRGSVGSSFVATMSGITEVNPLSPHYYCPNCHYYDFDSEEVKKYGGMAGCDMPDKV 934

Query: 400  ------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                        F + FE FL       PD D++F  + +     Y +  +G  +  +  
Sbjct: 935  CPECGHPMVKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSRAHDYTEVIFGKGQTFRAG 994

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G+L  K A   V    +  + +  R C+                              
Sbjct: 995  TIGTLADKTAYGYVKNYFE-EHGERKRNCE------------------------------ 1023

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY-------RDVRSDLPVTQFNM 560
            ++R++   Q   G+ R    H  GIV+   PL +++  +        D+ +    T F+ 
Sbjct: 1024 INRIV---QGCVGVRRTTGQHPGGIVV--LPLGEMIYSFTPVQHPANDMTTKTITTHFDY 1078

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
              I+   L+K D LG    T+++   D      VK     IP D  E   L  +   LGI
Sbjct: 1079 HSIDH-NLLKLDILGHDDPTMIRMLQDLTGLDPVKD----IPLDSREVMSLFQSTDALGI 1133

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE-KIVSIHPLID 679
               +  G +    G+     +  + ++   +P    ++V      +G +  + +   LI 
Sbjct: 1134 KPEDIGGCKLGALGVPEFGTDFAMQMLIDTKPKYFSDLVRIAGLAHGTDVWLGNAQTLIQ 1193

Query: 680  PMLKETQGVIIYQEQVM--QIAQ-LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
                  Q  I  ++ +M   I Q L  G + +  + +R+  GK +K E +++        
Sbjct: 1194 EGKATIQTAICTRDDIMIYLIQQGLEEGLAFTIMEAVRK--GKGLKPEWEEE-------M 1244

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            +K+G+      + +    K   Y F K+HAAAY +++++ A+ K  YP+ + AA  ++
Sbjct: 1245 TKHGVP-----DWYIWSCKKIKYMFPKAHAAAYVMMAWRIAYCKVFYPLAYYAAFFSI 1297


>gi|293363994|ref|ZP_06610730.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            alligatoris A21JP2]
 gi|292552484|gb|EFF41258.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            alligatoris A21JP2]
          Length = 1432

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 139/628 (22%), Positives = 235/628 (37%), Gaps = 113/628 (17%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
              R+  E++ I +  +   + I    ++ + +N   VG  RGS   S+ A    IT+++P
Sbjct: 835  ENRIKKEIDPILKYGYDVIYWISHKLVKKSVENGYLVG-SRGSVGSSLVATLSGITEVNP 893

Query: 398  L------RFSLLFERFLNPDRMSMPDFDIDFCQ------DRRDEVIRYVQN-KYGHERVA 444
            L      +    FE   +P   S  D D   C       D+  + I +     +  ++V 
Sbjct: 894  LPPHYICQNCKYFELVESPITTSGFDLDDKNCPKCNSILDKDGQTIPFETFLGFKADKVP 953

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
             I    S + +A + +  + L   + Q         +  A+  S   I +        ++
Sbjct: 954  DIDLNFSGEYQAQIHNEVKRL---FGQNHTFRAGTISTAAYKTSFGYIKNAIDENGKHIS 1010

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPM---YRDVRSDLPVTQFN 559
            D  VD L   + ++EG+ R    H  GI+I   +  +    P+     D  SD   T F+
Sbjct: 1011 DNFVDYL---TTQIEGVKRTTGQHPGGILIIPKEFDVEDFCPINFPADDTSSDWKTTHFD 1067

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT----- 614
             + I    ++K D LG    T + + L+ L    VK D   IP  D +   +  +     
Sbjct: 1068 FRAIHD-NVLKLDLLGHDDPTAI-RMLEKLTGLNVKKD---IPKKDEKVMSIFKSPKALG 1122

Query: 615  ----------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
                       G LGI +  +  +R+ LE  +P    D+I+L  L          V+ N 
Sbjct: 1123 IEPSQIGNEQTGALGIPEFGTPFVRKMLEQSKPQHFSDLISLSGLSHGTD-----VWLN- 1176

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKE 723
             N +  I++    ID ++     +++Y   +    + L  + + E   +R+  G K  +E
Sbjct: 1177 -NAQSLIMNEGLTIDKVISCRDDIMVYL--IQNGVESLDAFKIMEQ--VRKGQGIKPDQE 1231

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM K          K GI      N +    K   Y F K+HA AY +++++ AW K + 
Sbjct: 1232 EMLK----------KIGIK-----NWYIESMKKIKYMFPKAHATAYVLMAWRIAWFKVYK 1276

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT--------------PCVD-- 827
            P+E+ A   T   D V  I+    D     I      +N               P ++  
Sbjct: 1277 PLEYYATYFTTRCD-VFDIESMANDVNLAKINNKISEINNKSNNERSVKENNLIPVLEIA 1335

Query: 828  -------FKVGDNRIYYSL-----------------AAIKGVGTTTARHIMEASADKPFD 863
                   F +    ++ SL                 + + G+G   A  I  A  ++PF 
Sbjct: 1336 RELYARGFSISSISVHESLENEWIINREKKCLIPSFSTMDGLGINIAETITAARKERPFT 1395

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            S EDF  R    K      E L   G L
Sbjct: 1396 SKEDFFKRTSITKTQFNEFEKLGIFGDL 1423


>gi|146319608|ref|YP_001199320.1| DNA polymerase III PolC [Streptococcus suis 05ZYH33]
 gi|146321806|ref|YP_001201517.1| DNA polymerase III PolC [Streptococcus suis 98HAH33]
 gi|253752606|ref|YP_003025747.1| DNA polymerase III PolC-type [Streptococcus suis SC84]
 gi|253754432|ref|YP_003027573.1| DNA polymerase III PolC-type [Streptococcus suis P1/7]
 gi|253756365|ref|YP_003029505.1| DNA polymerase III PolC-type [Streptococcus suis BM407]
 gi|166217454|sp|A4W428|DPO3_STRS2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|166217456|sp|A4VXT1|DPO3_STRSY RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|145690414|gb|ABP90920.1| DNA polymerase III, alpha subunit (gram-positive type) [Streptococcus
            suis 05ZYH33]
 gi|145692612|gb|ABP93117.1| DNA polymerase III, alpha subunit (gram-positive type) [Streptococcus
            suis 98HAH33]
 gi|251816895|emb|CAZ52544.1| DNA polymerase III PolC-type [Streptococcus suis SC84]
 gi|251818829|emb|CAZ56672.1| DNA polymerase III PolC-type [Streptococcus suis BM407]
 gi|251820678|emb|CAR47440.1| DNA polymerase III PolC-type [Streptococcus suis P1/7]
 gi|292559223|gb|ADE32224.1| DNA polymerase III, alpha subunit [Streptococcus suis GZ1]
 gi|319759021|gb|ADV70963.1| DNA polymerase III PolC [Streptococcus suis JS14]
          Length = 1463

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 137/667 (20%), Positives = 245/667 (36%), Gaps = 143/667 (21%)

Query: 199  QVVQLAYTHELPLVATNNSLFLS-EEDYEAHDVLMAVAHSTVVS------QKDRPRVTPD 251
            Q++++     LP++AT N  ++  EE+     ++ A+     ++      +  +P   P 
Sbjct: 723  QLIEVGRRAGLPVLATGNVHYIDPEEEIYREIIVRALGQGAPINWTIGNGENAQPAPLPK 782

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             + +  SEM+  F+ L E+L   + I    +        +L RF     +D+Q  +  +L
Sbjct: 783  AHFRTTSEMLDEFAFLGESLAREIVITNPNA--------MLDRF-----EDVQVVK-TDL 828

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                +   E  +A+    K +             R++ EL  I    F+  +L     + 
Sbjct: 829  YTPYIEKAEETVAELTYQKAFEIYGNPLPDIIDLRIEKELTSILGNGFAVIYLASQMLVH 888

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------RFSLL 403
             + +    VG  RGS   S  A  + IT+++P+                       F L 
Sbjct: 889  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSYGSGFDLP 947

Query: 404  -------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                               FE FL  D   +PD D++F  D +      V++ +G E   
Sbjct: 948  DKDCEKCGTKYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEENAF 1007

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V R  +  Y +  R                              
Sbjct: 1008 RAGTVGTVAAKTAYGFV-RGYERDYGKFYR------------------------------ 1036

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV--------- 555
            D  V+RL   +    G+ R    H  GI++         P Y DV    PV         
Sbjct: 1037 DVEVERL---AAGAAGVKRTTGQHPGGIIV--------FPDYMDVYDFTPVQYPADDVTA 1085

Query: 556  ----TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
                T FN   I++  ++K D LG    T+++K  D        +D   IP DD     L
Sbjct: 1086 SWQTTHFNFHDIDE-NVLKLDILGHDDPTMVRKLQDLSG-----IDPQTIPADDKGVMAL 1139

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
             +    LG+   E  G    + G+       +  +V   +P     ++  +   +G +  
Sbjct: 1140 FSGTEILGV-TPEQIGTPTGMLGIPEFGTNFVRGMVEETKPTTFSELLQLSGLSHGTDVW 1198

Query: 672  V-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            + +   LI   +     VI  ++ +M     A L    + +  + +R+ +  KI EE   
Sbjct: 1199 LGNAQDLIKAGIANLSTVIGCRDDIMVYLMHAGLPPKMAFNIMERVRKGLWLKISEE--- 1255

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  +I     N +         E   K   Y F K+HAAAY +++ + A+ K H+P+ +
Sbjct: 1256 ERNGYIQAMKDNKVPDWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPLYY 1310

Query: 788  LAASMTL 794
              A  ++
Sbjct: 1311 YCAYFSI 1317


>gi|241888547|ref|ZP_04775855.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
            haemolysans ATCC 10379]
 gi|241864814|gb|EER69188.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
            haemolysans ATCC 10379]
          Length = 1449

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 185/907 (20%), Positives = 330/907 (36%), Gaps = 203/907 (22%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR--MYLLDQGKQSV-RIC 132
            +ID + +L++ ++    FP      +LV  A+G + L  LVS      L+  K ++ R  
Sbjct: 603  EIDEKIDLELAHKRSRTFPCS----ILVKNAKGLKDLFRLVSYSCTKYLNSAKPTIPRSL 658

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFF---FNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            L+  +E       +L G  +G  D   F    NS +   + ++ F        Y+ +Q  
Sbjct: 659  LAQYRED------LLIGSGNG--DNEVFEELLNSKEAKVEDIIDFYD------YIEIQPK 704

Query: 190  RGYDRYRESQ--------------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
              Y  +  ++              ++QLA   E  +VAT +  +L E  +    +L    
Sbjct: 705  HHYANFIRNERIADNAELEEILKKLIQLAKKKEKIVVATGDCYYLDEYQHVYRQILRLTV 764

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL------ENTVEIARRCSFILQVHA 289
             S   ++  +P  T    L    EM+  FS L E L      +NT +I      ++ +  
Sbjct: 765  KSNPGARDLKPMAT----LLTTEEMLKEFSYLDEQLREELVIDNTHKINDMIELVVPLKD 820

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
             +    IE   D        E+RN     L   +A     +    +   +RL+ EL  I 
Sbjct: 821  KLYTPNIEGAAD--------EVRN-----LSYDMAHRIYGEEL-PEIVEKRLEKELASII 866

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------- 399
               FS  +LI    ++ +  +   VG  RGS   S+ A  + IT+++PL           
Sbjct: 867  GNGFSVVYLISHKLVKKSLDDGYLVG-SRGSVGSSLVATMMEITEVNPLAPHYVCPECKH 925

Query: 400  ------------FSLL-------------------FERFLNPDRMSMPDFDIDFCQDRRD 428
                        F L                    FE FL  +   +PD D++F  + + 
Sbjct: 926  SEFFLNAEYASGFDLPNKNCPHCDVKMTKDGQDIPFETFLGFNGDKVPDIDLNFSGEYQA 985

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
                + +  +G + V +  T  ++  K A      +    Y + + +             
Sbjct: 986  TAHNFTKEIFGEDYVYRAGTISTVAEKTAY-----SFTRDYYEKNEI------------- 1027

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY 546
                       E R  D  ++R   I+   EG  R    H  GI++   D  +    P  
Sbjct: 1028 -----------EKRSID--IER---IAAGCEGSKRTTGQHPGGILVVPNDMDIFDFTPYQ 1071

Query: 547  ---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
                D  S    T F+   I    ++KFD LG    T+++K  D        +D   I  
Sbjct: 1072 FPADDETSPWRTTHFDFHSIHD-NILKFDILGHDDPTMIRKLQDLSG-----IDPKTIDV 1125

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D E   + +T   LG+ + +         G+       +I ++   +P     +V  + 
Sbjct: 1126 SDPEVMGIFSTVEALGVTRDQVDSASGTF-GIPEFGTNFVIQMLDDTKPTTYSELVQISG 1184

Query: 664  RKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGK 719
              +G +  + +   LI     E + VI  ++ +M     A L  G S    + +R+  GK
Sbjct: 1185 LSHGTDVWLGNAQELIKNGTCELKDVIGCRDDIMVYLIHAGLEEGLSFKIMESVRK--GK 1242

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
             + E+ +K+            I K +     +   K   Y F K+HA AY +++ + AW 
Sbjct: 1243 GLTEDFEKEM-----------IDKDVPEWYIDSCKKIK-YMFPKAHACAYVLMALRIAWF 1290

Query: 780  KTHYPVEFLAASMTLEMDNVE-------------KIKKF-CQDARQFNIQIMPPSVN--- 822
            K H P+ +  A  ++   + +             KIK+    D  + + +     V+   
Sbjct: 1291 KVHQPLTYYCAYYSVRASDFDIITVVKGTETLKAKIKEIKTTDKNELSNKDKDALVSYEI 1350

Query: 823  ------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
                              +   D+ +  N +    + + G+G   A  I++A  +K F S
Sbjct: 1351 ANEMMERGFTFSKVDLEKSASHDYIIEGNTLIPPFSIVPGLGDNVANKIVQAREEKAFLS 1410

Query: 865  LEDFCSR 871
            +EDF  R
Sbjct: 1411 IEDFSKR 1417


>gi|307707703|ref|ZP_07644182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis NCTC 12261]
 gi|307616201|gb|EFN95395.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis NCTC 12261]
          Length = 1463

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 91/408 (22%), Positives = 159/408 (38%), Gaps = 74/408 (18%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ AK A   V +
Sbjct: 967  FETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-K 1025

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +  Y +  R                              D  V+RL   +Q   G+ R
Sbjct: 1026 GYERDYGKFYR------------------------------DAEVERL---AQGAAGVKR 1052

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 1053 TTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLK 1103

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
             D LG    T+++K  D        +D + IP DD     L +    LG+   E  G   
Sbjct: 1104 LDVLGHDDPTMIRKLQDLSG-----IDPNEIPMDDEGVMALFSGTDVLGV-TPEQIGTPT 1157

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVI 689
             + G+       +  +V    P     ++  +   +G +  + +   LI   + +   VI
Sbjct: 1158 GMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVI 1217

Query: 690  IYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
              ++ +M     A L    + +  + +R+ +  KI EE   ++  +I     N + +   
Sbjct: 1218 GCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMKANKVPEWY- 1273

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
                E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1274 ---IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1317


>gi|110801936|ref|YP_698978.1| DNA polymerase III PolC [Clostridium perfringens SM101]
 gi|110682437|gb|ABG85807.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens SM101]
          Length = 1449

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 133/626 (21%), Positives = 228/626 (36%), Gaps = 139/626 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I++L     G + L +LVS M  LD   +  R+  S + E   EGLI+ +   +G + +A
Sbjct: 627  IIILAKNQTGIKNLYKLVS-MAHLDYFARRPRLPKSIITEY-REGLIIGSACEAGQLYKA 684

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
                 +    K + +F      + +  +   +     +  +  RE   ++  L    + P
Sbjct: 685  VLEGKTDGELKEIASFYDYLEIQPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMDKP 744

Query: 211  LVATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            +VAT +  FL   D     ++MA   +    +Q       P  Y +  +EM+  F  L E
Sbjct: 745  VVATCDCHFLDPNDEVFRRIIMAGQGYGDADNQ-------PPLYFRTTNEMMKEFEYLGE 797

Query: 270  ------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
                   +ENT +IA     +  +     P  IE          E E+RN  +  +    
Sbjct: 798  EACREVVIENTQKIADMVEAVKPIPDETFPPKIEGA--------EEEIRNMTMNKVHSIY 849

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
             +         +  ++RLD ELN I    ++  +LI    +  + ++   VG  RGS   
Sbjct: 850  GENL------PEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSLEDGYLVG-SRGSVGS 902

Query: 384  SVTAYALTITDIDPL-----------------------------------------RFSL 402
            S  A    IT+++ L                                            +
Sbjct: 903  SFVATMSDITEVNGLPPHYVCPNCKKSEFFLDGSISSGADLPDKNCPDCGTKYIKDGHDI 962

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A   V 
Sbjct: 963  PFETFLGFEGDKEPDIDLNFSGEYQAVVHKYTEVLFGKGYVFKAGTIGTVAEKTAYGFVK 1022

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            + LQ                                R   ++   ++RL   +    G+ 
Sbjct: 1023 KYLQE-------------------------------RGLVVSQAEIERL---TIGCTGIK 1048

Query: 523  RHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R +  H  GI++   D  +    P+     DV +D+  T F+   I    L+K D LG  
Sbjct: 1049 RTSGQHPGGIMVVPNDNEIYNFCPIQHPADDVNTDIITTHFDYHSI-SGRLLKLDILGHD 1107

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE------SSGM--- 628
              T+L+     + Q    +D   IP +D +   L T+   LG+ + E      S G+   
Sbjct: 1108 DPTVLR-----MLQDLTGLDPKTIPLNDPKVISLFTSPDALGVTKEELGCEVGSYGLPEF 1162

Query: 629  -----RQALEGMQPDCIEDIIALVSL 649
                 RQ L   QP    D++ +  L
Sbjct: 1163 GTKFVRQMLVDTQPKSFADLVRISGL 1188


>gi|110799061|ref|YP_696378.1| DNA polymerase III PolC [Clostridium perfringens ATCC 13124]
 gi|168211421|ref|ZP_02637046.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens B str. ATCC 3626]
 gi|110673708|gb|ABG82695.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens ATCC 13124]
 gi|170710571|gb|EDT22753.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens B str. ATCC 3626]
          Length = 1449

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 133/626 (21%), Positives = 228/626 (36%), Gaps = 139/626 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I++L     G + L +LVS M  LD   +  R+  S + E   EGLI+ +   +G + +A
Sbjct: 627  IIILAKNQTGIKNLYKLVS-MAHLDYFARRPRLPKSIITEY-REGLIIGSACEAGQLYKA 684

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
                 +    K + +F      + +  +   +     +  +  RE   ++  L    + P
Sbjct: 685  VLEGKTDGELKEIASFYDYLEIQPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMDKP 744

Query: 211  LVATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            +VAT +  FL   D     ++MA   +    +Q       P  Y +  +EM+  F  L E
Sbjct: 745  VVATCDCHFLDPNDEVFRRIIMAGQGYGDADNQ-------PPLYFRTTNEMMKEFEYLGE 797

Query: 270  ------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
                   +ENT +IA     +  +     P  IE          E E+RN  +  +    
Sbjct: 798  EACREVVIENTQKIADMVEAVKPIPDETFPPKIEGA--------EEEIRNMTMNKVHSIY 849

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
             +         +  ++RLD ELN I    ++  +LI    +  + ++   VG  RGS   
Sbjct: 850  GENL------PEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSLEDGYLVG-SRGSVGS 902

Query: 384  SVTAYALTITDIDPL-----------------------------------------RFSL 402
            S  A    IT+++ L                                            +
Sbjct: 903  SFVATMSDITEVNGLPPHYVCPNCKKSEFFLDGSISSGADLPDKNCPDCGAKYIKDGHDI 962

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A   V 
Sbjct: 963  PFETFLGFEGDKEPDIDLNFSGEYQAVVHKYTEVLFGKGYVFKAGTIGTVAEKTAYGFVK 1022

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            + LQ                                R   ++   ++RL   +    G+ 
Sbjct: 1023 KYLQE-------------------------------RGLVVSQAEIERL---TIGCTGIK 1048

Query: 523  RHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R +  H  GI++   D  +    P+     DV +D+  T F+   I    L+K D LG  
Sbjct: 1049 RTSGQHPGGIMVVPNDNEIYNFCPIQHPADDVNTDIITTHFDYHSI-SGRLLKLDILGHD 1107

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE------SSGM--- 628
              T+L+     + Q    +D   IP +D +   L T+   LG+ + E      S G+   
Sbjct: 1108 DPTVLR-----MLQDLTGLDPKTIPLNDPKVISLFTSPDALGVTKEELGCEVGSYGLPEF 1162

Query: 629  -----RQALEGMQPDCIEDIIALVSL 649
                 RQ L   QP    D++ +  L
Sbjct: 1163 GTKFVRQMLVDTQPKSFADLVRISGL 1188


>gi|322374172|ref|ZP_08048705.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. C150]
 gi|321276877|gb|EFX53949.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. C150]
          Length = 1464

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 132/676 (19%), Positives = 256/676 (37%), Gaps = 163/676 (24%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVS------QKDRPRVTPDH 252
            ++++A   + P++AT N  +++ ED    ++++ A+    +++      +  +P   P+ 
Sbjct: 725  LIEVANRLDKPVLATGNVHYINPEDAIYREIIVRALGQGAMINRPIGKGENAKPAPLPEA 784

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            + +  +EM+  F+ L + L   V +    +   Q+          +E + ++K+      
Sbjct: 785  HFRTTNEMLDDFAFLGKELAYEVVVTNTQAMADQI----------EEVEVVKKDLYTPFI 834

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            ++A    E ++A+   AK +             R++ EL+ I    F+  +L     +  
Sbjct: 835  DRA----EEQVAEMTYAKAFELYGNPLPDIIDLRIEKELSSILGNGFAVIYLASQMLVNR 890

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL----------------------- 403
            + +    VG  RGS   S  A  + IT+++P+    L                       
Sbjct: 891  SNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYLCPKCQHSEFITDGSYGSGFDLPD 949

Query: 404  ------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                              FE FL  D   +PD D++F  D +      V++ +G +   +
Sbjct: 950  KKCSECGSEYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEQYAFR 1009

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  + A   V +  +  Y++  R                              D
Sbjct: 1010 AGTVGTVADRTAYGFV-KGYERDYNKFYR------------------------------D 1038

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---------- 555
              VDRL   +    G+ R    H  GIV+        +P Y DV    PV          
Sbjct: 1039 AEVDRL---AMGAAGVKRSTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAA 1087

Query: 556  ---TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K  D        +D   I  DD +   L 
Sbjct: 1088 WQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG-----IDPKDIRADDPDVMKLF 1141

Query: 613  --------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
                          T  G LGI +  ++ +R  ++   P    +++ L  L       ++
Sbjct: 1142 SGTDILGVTPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHG---TDV 1198

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             + N +   KE I ++  +I         +++Y    +  A L    + +  + +R+ M 
Sbjct: 1199 WLGNAQDLIKEGIATLKTVIGC----RDDIMVY----LMHAGLDPKMAFTIMERVRKGMW 1250

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             KI EE   ++  +I    +N +         E   K   Y F K+HAAAY +++ + A+
Sbjct: 1251 LKISEE---ERNGYIQAMRENNVPDWY----IESCGKIK-YMFPKAHAAAYVMMALRVAY 1302

Query: 779  MKTHYPVEFLAASMTL 794
             K H+P+ +  A  ++
Sbjct: 1303 FKVHHPIYYYCAYFSI 1318


>gi|320547752|ref|ZP_08042036.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812]
 gi|320447512|gb|EFW88271.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812]
          Length = 1464

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 138/679 (20%), Positives = 245/679 (36%), Gaps = 189/679 (27%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVVSQKD-RPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  ED    ++++      A  +  +   +D +P   P  + +  +EM+ 
Sbjct: 735  PVLATGNVHYIEPEDEIYREIIVRSLGQGAPINRPIGRGEDAQPAPLPKAHFRTTNEMLD 794

Query: 263  IFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E       ++NT + A R   I  V   +   F+EK                  
Sbjct: 795  EFAFLGEDVAYEIVVKNTNDFAERFEEIEVVKKDLYTPFLEKS----------------- 837

Query: 317  AGLEVRLAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
               E R+A+    K +            +R++ EL  I    F+  +L     +  + K 
Sbjct: 838  ---EERVAEMTYQKAFEIYGNPLPDIVDRRIEKELTSILGNGFAVIYLASQMLVIRSNKR 894

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPL-------------------------------- 398
               VG  RGS   S  A  + IT+++P+                                
Sbjct: 895  GYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSVGSGYDLPNKDCP 953

Query: 399  ----RF-----SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                R+      + FE FL  D   +PD D++F  D +      V++ +G +   +  T 
Sbjct: 954  KCGTRYKKDGHDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEQYAFRAGTV 1013

Query: 450  GSLQAKAAL-------RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            G++  + A        RD G+    P ++V+RL                           
Sbjct: 1014 GTVADRTAYGFVKGYERDYGK--MYPEAEVERL--------------------------- 1044

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV------- 555
                        +Q   G+ R    H  GIV+        +P Y DV    PV       
Sbjct: 1045 ------------AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDL 1084

Query: 556  ------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
                  T FN   I++  ++K D LG    T+++K  D        +D   IP DD +  
Sbjct: 1085 SAEWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG-----IDPKDIPADDPDVM 1138

Query: 610  HLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             L               T  G LGI +  ++ +R  +E   P    +++ L  L      
Sbjct: 1139 ALFSGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVEETHPTTFAELLQLSGLSHG--- 1195

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             ++ + N +   KE I ++  +I         +++Y    +  A L    + +  + +R+
Sbjct: 1196 TDVWLGNAQDLIKEGIATLKTVIGC----RDDIMVY----LMHAGLDPKMAFTIMERVRK 1247

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
                KI    D+++  +I     N +         E   K   Y F K+HAAAY +++ +
Sbjct: 1248 GRWLKIS---DEERNGYIQAMRDNNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALR 1299

Query: 776  TAWMKTHYPVEFLAASMTL 794
             A+ K HYP+ +  A  ++
Sbjct: 1300 VAYFKVHYPLYYYCAYFSI 1318


>gi|218283081|ref|ZP_03489176.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989]
 gi|218216150|gb|EEC89688.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989]
          Length = 1446

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 117/548 (21%), Positives = 202/548 (36%), Gaps = 125/548 (22%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  +   +PD D++F  + +     Y +  +G + V +  T G++Q K A      
Sbjct: 954  FETFLGFEGDKVPDIDLNFSGEYQPNAHAYTKEVFGDDHVFRAGTVGTVQEKTA------ 1007

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
                 Y  V    + +  +P              F EA+  D        +++  EG+ R
Sbjct: 1008 -----YGYVKGYEEEMECEP--------------FNEAKRVD--------LAKGCEGVKR 1040

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        VP+  DV    PV             T F+   I    ++K
Sbjct: 1041 TTGQHPGGIVV--------VPLDMDVHDFTPVQYPANNPNATWKTTHFDFHQIHD-NILK 1091

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            FD LG    T ++     + +R   V++  IP +D  T  + +T  +L I   + + +  
Sbjct: 1092 FDILGHVDPTAMK-----MLERITGVNVRQIPMNDQATMAIFSTTESLKIDTTKYNEVTG 1146

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVI 689
            A  G+       +  ++ L +P     +V  +   +G +  + +   LID    +   VI
Sbjct: 1147 AA-GIPEFGTPFVRGILELTKPTTFAELVTISGLSHGTDVWLGNAKDLIDNGTCKLNEVI 1205

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
              ++ +M     L GY +      +  +   I E + K K     G     +++  A N+
Sbjct: 1206 GCRDDIMVD---LMGYGV------KPKLSFTIMESVRKGK-----GLKDEWVTEMKANNV 1251

Query: 750  FELLAKFA---DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD--------- 797
             E          Y F K+HA AY +++ + AW K H PV +     ++  D         
Sbjct: 1252 PEWFIDSCTKIKYMFPKAHAVAYVMMAVRIAWFKVHMPVHYYCMYFSIRCDAYDVQTMIQ 1311

Query: 798  -------NVEKIKKFCQDARQ--------------------------FNIQIMPPSVNTP 824
                    +  IK   +D  Q                           NI I   +    
Sbjct: 1312 GEAAIRQRMADIKHMKEDKTQKPSDKELAIYDTLELALEMVLRGFRFSNISINRSAATEF 1371

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
             VD       I     +I G+G+     +++A  +KPF S ED   R    +L++ ++E 
Sbjct: 1372 IVD-PDDPKAIIPPFTSIDGLGSNVGLSVVKAREEKPFLSKEDVLKRT---QLSKTLVEK 1427

Query: 885  LVFAGALD 892
            L    AL+
Sbjct: 1428 LAEMNALE 1435


>gi|18310673|ref|NP_562607.1| DNA polymerase III PolC [Clostridium perfringens str. 13]
 gi|168214476|ref|ZP_02640101.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens CPE str. F4969]
 gi|24418366|sp|Q8XJR3|DPO3_CLOPE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|18145354|dbj|BAB81397.1| DNA polymerase III alpha subunit [Clostridium perfringens str. 13]
 gi|170714031|gb|EDT26213.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens CPE str. F4969]
          Length = 1449

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 133/626 (21%), Positives = 228/626 (36%), Gaps = 139/626 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I++L     G + L +LVS M  LD   +  R+  S + E   EGLI+ +   +G + +A
Sbjct: 627  IIILAKNQTGIKNLYKLVS-MAHLDYFARRPRLPKSIITEY-REGLIIGSACEAGQLYKA 684

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
                 +    K + +F      + +  +   +     +  +  RE   ++  L    + P
Sbjct: 685  VLEGKTDGELKEIASFYDYLEIQPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMDKP 744

Query: 211  LVATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            +VAT +  FL   D     ++MA   +    +Q       P  Y +  +EM+  F  L E
Sbjct: 745  VVATCDCHFLDPNDEVFRRIIMAGQGYGDADNQ-------PPLYFRTTNEMMKEFEYLGE 797

Query: 270  ------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
                   +ENT +IA     +  +     P  IE          E E+RN  +  +    
Sbjct: 798  EACREVVIENTQKIADMVEAVKPIPDETFPPKIEGA--------EEEIRNMTMNKVHSIY 849

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
             +         +  ++RLD ELN I    ++  +LI    +  + ++   VG  RGS   
Sbjct: 850  GENL------PEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSLEDGYLVG-SRGSVGS 902

Query: 384  SVTAYALTITDIDPL-----------------------------------------RFSL 402
            S  A    IT+++ L                                            +
Sbjct: 903  SFVATMSDITEVNGLPPHYVCPNCKKSEFFLDGSISSGADLPDKNCPDCGAKYIKDGHDI 962

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A   V 
Sbjct: 963  PFETFLGFEGDKEPDIDLNFSGEYQAVVHKYTEVLFGKGYVFKAGTIGTVAEKTAYGFVK 1022

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            + LQ                                R   ++   ++RL   +    G+ 
Sbjct: 1023 KYLQE-------------------------------RGLVVSQAEIERL---TIGCTGIK 1048

Query: 523  RHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R +  H  GI++   D  +    P+     DV +D+  T F+   I    L+K D LG  
Sbjct: 1049 RTSGQHPGGIMVVPNDNEIYNFCPIQHPADDVNTDIITTHFDYHSI-SGRLLKLDILGHD 1107

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE------SSGM--- 628
              T+L+     + Q    +D   IP +D +   L T+   LG+ + E      S G+   
Sbjct: 1108 DPTVLR-----MLQDLTGLDPKTIPLNDPKVISLFTSPDALGVTKEELGCEVGSYGLPEF 1162

Query: 629  -----RQALEGMQPDCIEDIIALVSL 649
                 RQ L   QP    D++ +  L
Sbjct: 1163 GTKFVRQMLVDTQPKSFADLVRISGL 1188


>gi|76787214|ref|YP_330464.1| DNA polymerase III PolC [Streptococcus agalactiae A909]
 gi|76562271|gb|ABA44855.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae A909]
          Length = 1468

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 151/760 (19%), Positives = 278/760 (36%), Gaps = 179/760 (23%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVVSQKD-RPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  ED    ++++      A+ + T+   +D +P   P  + +  +EM+ 
Sbjct: 739  PVLATGNVHYIEPEDEIYREIIVRSLGQGAMINRTIGRGEDAQPAPLPKAHFRTTNEMLD 798

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
             F+ L + L   + +    +F          RF + E        + +L    V   E R
Sbjct: 799  EFAFLGKDLAYEIVVTNTNTFA--------DRFEDVEV------VKGDLYTPFVDRAEER 844

Query: 323  LAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            +A+   AK +             R++ EL  I    F+  +L     +Q + +    VG 
Sbjct: 845  VAELTYAKAFEIYGNPLPDIIDLRIEKELASILGNGFAVIYLASQMLVQRSNERGYLVG- 903

Query: 377  GRGSGAGSVTAYALTITDIDPL------------RF------------------------ 400
             RGS   S  A  + IT+++P+             F                        
Sbjct: 904  SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSCGSGYDLPNKNCPKCGTLY 963

Query: 401  -----SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K
Sbjct: 964  KKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEEYAFRAGTVGTVAEK 1023

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V +  +  Y++                                 D  V+RL   +
Sbjct: 1024 TAFGFV-KGYERDYNKF------------------------------YNDAEVERL---A 1049

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GIV+        +P Y DV    PV             T FN   
Sbjct: 1050 TGAAGVKRSTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDMTAAWQTTHFNFHD 1101

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            I++  ++K D LG    T+++K  D        +D S I  DD +   L +    LG+ +
Sbjct: 1102 IDE-NVLKLDILGHDDPTMIRKLQDLSG-----IDPSNILPDDPDVMKLFSGTEVLGVTE 1155

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPM 681
             E  G    + G+       +  +V+   P     ++  +   +G +  + +   LI   
Sbjct: 1156 -EQIGTPTGMLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKEG 1214

Query: 682  LKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +     VI  ++ +M     A L    + +  + +R+ +  KI E+   ++  +I     
Sbjct: 1215 IATLSTVIGCRDDIMVYLMHAGLQPKMAFTIMERVRKGLWLKISED---ERNGYIQAMRD 1271

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA-------- 790
            N +         E   K   Y F K+HAAAY +++ + A+ K HYP+ +  A        
Sbjct: 1272 NNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHYPIFYYCAYFSIRAKA 1326

Query: 791  ----SMTLEMDNVEKIKKFCQDARQFN------------IQIMPPSVN------------ 822
                +M+  +D V+   K   + RQ N            ++++   +             
Sbjct: 1327 FELRTMSAGLDAVKARMKDITEKRQRNEATNVENDLFTTLELVNEMLERGFKFGKLDLYR 1386

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            +   DF + ++ +     A++G+G   A+ I+ A  D  F
Sbjct: 1387 SHATDFIIEEDTLIPPFVAMEGLGENVAKQIVRAREDGEF 1426


>gi|218660311|ref|ZP_03516241.1| DNA polymerase III protein, alpha subunit [Rhizobium etli IE4771]
          Length = 240

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 16/195 (8%)

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD---RPR 247
           G DR   + +  LA  + +PL+ATN  L+   E     DV++A+     +SQ      P 
Sbjct: 51  GRDRQVFAVLAMLAARNRVPLIATNQPLYHHPERRPLSDVVIAIREHVQISQAGFLLAPN 110

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              + YLK+  EM+ IF D P+A+ENT     + +F L+      P       +D  +  
Sbjct: 111 A--ERYLKDSREMMRIFGDYPDAVENTQVFFGKLTFSLKELQHNYP-----PENDPGETP 163

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
           +  L     AG   R   G   K        Q++D+EL +I    ++ YFL V   IQ A
Sbjct: 164 QQTLERLTRAGAARRYPGGVPPK------VAQQIDYELKLIGDKNYASYFLTVHRIIQHA 217

Query: 368 KKNNIPVGPGRGSGA 382
           + +   +  GRGS  
Sbjct: 218 RYDLKVLCQGRGSAG 232


>gi|210608497|ref|ZP_03287873.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787]
 gi|210152988|gb|EEA83994.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787]
          Length = 1269

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 124/602 (20%), Positives = 223/602 (37%), Gaps = 136/602 (22%)

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRY 195
            EGL++ +   +G + +A   N S     RL+ F      + L  ++  V+  +   Y + 
Sbjct: 689  EGLLIGSACEAGELYQAVLNNKSDETIARLVEFYDYLEIQPLGNNQFMVDSPK---YSQI 745

Query: 196  RESQ--------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRP 246
            R  +        +V+L      P+VAT +  FL  ED     ++M         SQ    
Sbjct: 746  RSDEDLKDINRKIVKLGEEFHKPVVATCDVHFLDAEDEVYRRIIMTGKGFGDADSQ---- 801

Query: 247  RVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               P  YL+   EM+  F+ L   +A E  +E   + S +++  +P+ P     +C  + 
Sbjct: 802  ---PPLYLRTTEEMMEEFAYLGSKKAHEVVIENTVKISDMIEKISPVRP----DKCPPVI 854

Query: 305  KEEENELRN----KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            ++ +  LR+    KA +     L +  +          +RL+ ELN I    F+  ++I 
Sbjct: 855  EDSDQMLRDICYSKAHSMYGDPLPEIVV----------ERLERELNSIISNGFAVMYIIA 904

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               +  + ++   VG  RGS   S  A    IT+++PL                      
Sbjct: 905  QKLVWKSVEDGYLVG-SRGSVGSSFAATMAGITEVNPLSPHYYCPNCFYSDFESEEVRAY 963

Query: 400  ------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                    F + FE FL       PD D++F  D +    +Y +
Sbjct: 964  AGGCGYDMPDKLCPNCGKPLVKDGFDIPFETFLGFKGNKEPDIDLNFSGDYQSNAHKYTE 1023

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G  +  +  T G+L  K A   V    +  + Q  R C+                  
Sbjct: 1024 VIFGEGQTYRAGTIGTLADKTAYGFVKNYYE-EHGQGKRKCE------------------ 1064

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY-------RD 548
                        ++R+L   Q   G+ R    H  GI++   PL Q +  +        D
Sbjct: 1065 ------------IERIL---QGCTGIRRSTGQHPGGIIV--LPLGQDINSFTPVQHPAND 1107

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
            + +D+  T F+   I+   L+K D LG    T+++   + + Q  G     + IP DD  
Sbjct: 1108 MTTDIVTTHFDYHSIDH-NLLKLDILGHDDPTIIKMLEELVEQLTGKPFKATDIPLDDQG 1166

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
               L     +LGI   +  G      G+     + +I +V   +P  + +++  +   +G
Sbjct: 1167 VMKLFRDTSSLGITPDDIGGCPVGCLGIPEFGTDFVIQMVVDTKPKTLSDLIRISGLSHG 1226

Query: 668  KE 669
             +
Sbjct: 1227 TD 1228


>gi|5912340|emb|CAB56071.1| DNA polymerase III alpha subunit [Rickettsia felis]
          Length = 386

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 13/204 (6%)

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I ++L AIKGV     + +  E  A   F S+ DF  R+  K +N ++LE+L+ +G  D 
Sbjct: 70   IIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFIERLPLKSINSKLLENLIKSGCFDE 129

Query: 894  FGYSRMQLLQSLDNIQKY-AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
               +R+QL  S+  +  Y A +  +  +N+   I   +  + S  I +     +N+++ F
Sbjct: 130  LHDNRLQLFSSISKLLAYSASYHAEQESNQFSLI---KVSSLSPNILIASDYADNNTLAF 186

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTR 1010
              E   +G + S HPL  Y+ I  ++ I    +    +    N + LA ++   Q+K +R
Sbjct: 187  Y-EFESMGLFISNHPLTQYQEIFSRLNILNTADLHNNLPDGTNRVNLAGVI---QKKDSR 242

Query: 1011 KGSRIGWVT--FSEPAKEYEANFF 1032
              +R  +VT   S+P   +E + F
Sbjct: 243  MSARGRFVTLVLSDPENIFELSIF 266


>gi|77409408|ref|ZP_00786106.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae COH1]
 gi|77171990|gb|EAO75161.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae COH1]
          Length = 1468

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 151/760 (19%), Positives = 278/760 (36%), Gaps = 179/760 (23%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVVSQKD-RPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  ED    ++++      A+ + T+   +D +P   P  + +  +EM+ 
Sbjct: 739  PVLATGNVHYIEPEDEIYREIIVRSLGQGAMINRTIGRGEDAQPAPLPKAHFRTTNEMLD 798

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
             F+ L + L   + +    +F          RF + E        + +L    V   E R
Sbjct: 799  EFAFLGKDLAYEIVVTNTNTFA--------DRFEDVEV------VKGDLYTPFVDRAEER 844

Query: 323  LAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            +A+   AK +             R++ EL  I    F+  +L     +Q + +    VG 
Sbjct: 845  VAELTYAKAFEIYGNPLPDIIDLRIEKELASILGNGFAVIYLASQMLVQRSNERGYLVG- 903

Query: 377  GRGSGAGSVTAYALTITDIDPL------------RF------------------------ 400
             RGS   S  A  + IT+++P+             F                        
Sbjct: 904  SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSCGSGYDLPNKNCPKCGTLY 963

Query: 401  -----SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K
Sbjct: 964  KKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEEYAFRAGTVGTVAEK 1023

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V +  +  Y++                                 D  V+RL   +
Sbjct: 1024 TAFGFV-KGYERDYNKF------------------------------YNDAEVERL---A 1049

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GIV+        +P Y DV    PV             T FN   
Sbjct: 1050 TGAAGVKRSTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDMTAAWQTTHFNFHD 1101

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            I++  ++K D LG    T+++K  D        +D S I  DD +   L +    LG+ +
Sbjct: 1102 IDE-NVLKLDILGHDDPTMIRKLQDLSG-----IDPSNILPDDPDVMKLFSGTEVLGVTE 1155

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPM 681
             E  G    + G+       +  +V+   P     ++  +   +G +  + +   LI   
Sbjct: 1156 -EQIGTPTGMLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKEG 1214

Query: 682  LKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +     VI  ++ +M     A L    + +  + +R+ +  KI E+   ++  +I     
Sbjct: 1215 IATLSTVIGCRDDIMVYLMHAGLQPKMAFTIMERVRKGLWLKISED---ERNGYIQAMRD 1271

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA-------- 790
            N +         E   K   Y F K+HAAAY +++ + A+ K HYP+ +  A        
Sbjct: 1272 NNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHYPIFYYCAYFSIRAKA 1326

Query: 791  ----SMTLEMDNVEKIKKFCQDARQFN------------IQIMPPSVN------------ 822
                +M+  +D V+   K   + RQ N            ++++   +             
Sbjct: 1327 FELRTMSAGLDAVKARMKDITEKRQRNEATNVENDLFTTLELVNEMLERGFKFGKLDLYR 1386

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            +   DF + ++ +     A++G+G   A+ I+ A  D  F
Sbjct: 1387 SHATDFIIEEDTLIPPFVAMEGLGENVAKQIVRAREDGEF 1426


>gi|225375372|ref|ZP_03752593.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM
            16841]
 gi|225212861|gb|EEG95215.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM
            16841]
          Length = 1512

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 150/756 (19%), Positives = 266/756 (35%), Gaps = 178/756 (23%)

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-----GDRLYVNLQRHRGYDRYR 196
            EGL++ +   +G + RA      Q    RL+ F         G+  ++        +   
Sbjct: 722  EGLLLGSACEAGELYRAIVGGRPQEEIIRLVKFYDYLEIQPLGNNEFMLRSDKEPVNTME 781

Query: 197  ESQ-----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            E Q     + +L       +VAT +  FL  ED     ++MA         KD     P 
Sbjct: 782  ELQDINRRICRLGEEFNKLVVATCDVHFLDPEDEIYRRIIMAGK-----GFKDADEQAP- 835

Query: 252  HYLKNRSEMVSIFSDLPEA------LENTVEIARRCSFILQVHAPILPRFIEKE---CDD 302
             YL+   EM+  F  L  A      + N  +IA  C  I  V     P FIE       D
Sbjct: 836  LYLRTTEEMLKEFEYLGSAKAEEVVITNPNKIADMCEKIAPVRPDKCPPFIENSDQMLRD 895

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            I   + + +  + +  +                  ++RLD ELN I    ++  ++I   
Sbjct: 896  ICYNKAHSMYGEELPPI-----------------VKERLDRELNSIISNGYAVMYIIAQK 938

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------- 399
             +  + ++   VG  RGS   S  A    IT+++PL+                       
Sbjct: 939  LVWKSNEDGYLVG-SRGSVGSSFAATMSGITEVNPLQAHYRCEYCKYSDFDSPEVKAFSG 997

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                  F + FE FL       PD D++F  + + +   Y +  
Sbjct: 998  RSGCDMPDKICPVCGKKLVKDGFDIPFETFLGFKGNKEPDIDLNFSGEYQSKAHAYCEVI 1057

Query: 438  YGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            +G+ +  +  T G+L  K A   +      R +     ++DR                  
Sbjct: 1058 FGYGQTFRAGTIGTLADKTAFGYIKNYYEERGIHKRNCEIDR------------------ 1099

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY------ 546
                                 I Q   G+ R    H  GIV+   P+ + +  +      
Sbjct: 1100 ---------------------IVQGCVGVRRTTGQHPGGIVV--LPVGEEINTFTPVQHP 1136

Query: 547  -RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
              D+ +    T F+   I+   L+K D LG    T+++     + Q    +D   IP DD
Sbjct: 1137 ANDMTTATVTTHFDYHSIDH-NLLKLDILGHDDPTMIR-----MLQDLTGLDPQTIPLDD 1190

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                 L      LG+   + +G+     G+     +  + +V   +P    +++  +   
Sbjct: 1191 QTVMSLFMNTSALGVEPEDINGIPLGCLGIPEFGTDFAMQMVIDAKPTEFSDLIRISGLS 1250

Query: 666  NGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKI 721
            +G +  + +   LI+  +      I  ++ +M       L S  S +  + +R+  GK +
Sbjct: 1251 HGTDVWLGNAQTLIEQGIATISTAICTRDDIMIYLISMGLDSEQSFTIMESVRK--GKGL 1308

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            KEE   ++E       +  I   + +           Y F K+HAAAY +++++ A+ K 
Sbjct: 1309 KEEW--KEEMRAHNVPEWYIDSCLKIK----------YMFPKAHAAAYVMMAWRIAYCKV 1356

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             YP+ + AA  ++              A  FN +IM
Sbjct: 1357 FYPLAYYAAYFSIR-------------ATGFNYEIM 1379


>gi|169342745|ref|ZP_02863785.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens C str. JGS1495]
 gi|169299251|gb|EDS81321.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens C str. JGS1495]
          Length = 1449

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 133/626 (21%), Positives = 228/626 (36%), Gaps = 139/626 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I++L     G + L +LVS M  LD   +  R+  S + E   EGLI+ +   +G + +A
Sbjct: 627  IIILAKNQTGIKNLYKLVS-MAHLDYFARRPRLPKSIITEY-REGLIIGSACEAGQLYKA 684

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
                 +    K + +F      + +  +   +     +  +  RE   ++  L    + P
Sbjct: 685  VLEGKTDGELKEIASFYDYLEIQPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMDKP 744

Query: 211  LVATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            +VAT +  FL   D     ++MA   +    +Q       P  Y +  +EM+  F  L E
Sbjct: 745  VVATCDCHFLDPNDEVFRRIIMAGQGYGDADNQ-------PPLYFRTTNEMMKEFEYLGE 797

Query: 270  ------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
                   +ENT +IA     +  +     P  IE          E E+RN  +  +    
Sbjct: 798  EACREVVIENTQKIADMVEAVKPIPDETFPPKIEGA--------EEEIRNMTMNKVHSIY 849

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
             +         +  ++RLD ELN I    ++  +LI    +  + ++   VG  RGS   
Sbjct: 850  GENL------PEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSLEDGYLVG-SRGSVGS 902

Query: 384  SVTAYALTITDIDPL-----------------------------------------RFSL 402
            S  A    IT+++ L                                            +
Sbjct: 903  SFVATMSDITEVNGLPPHYVCPNCKKSEFFLDGSISSGADLPDKNCPECGTKYIKDGHDI 962

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A   V 
Sbjct: 963  PFETFLGFEGDKEPDIDLNFSGEYQAVVHKYTEVLFGKGYVFKAGTIGTVAEKTAYGFVK 1022

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            + LQ                                R   ++   ++RL   +    G+ 
Sbjct: 1023 KYLQE-------------------------------RGLVVSQAEIERL---TIGCTGIK 1048

Query: 523  RHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R +  H  GI++   D  +    P+     DV +D+  T F+   I    L+K D LG  
Sbjct: 1049 RTSGQHPGGIMVVPNDNEIYNFCPIQHPADDVNTDIITTHFDYHSI-SGRLLKLDILGHD 1107

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE------SSGM--- 628
              T+L+     + Q    +D   IP +D +   L T+   LG+ + E      S G+   
Sbjct: 1108 DPTVLR-----MLQDLTGLDPKTIPLNDPKVISLFTSPDALGVTKEELGCEVGSYGLPEF 1162

Query: 629  -----RQALEGMQPDCIEDIIALVSL 649
                 RQ L   QP    D++ +  L
Sbjct: 1163 GTKFVRQMLVDTQPKSFADLVRISGL 1188


>gi|319945650|ref|ZP_08019902.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641]
 gi|319748249|gb|EFW00491.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641]
          Length = 1463

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 136/657 (20%), Positives = 245/657 (37%), Gaps = 145/657 (22%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVVSQKD-RPRVTPDHYLKNRSEMVS 262
            P++AT N  +L  E+    ++++      A+ + T+   ++ +P   P  + +  +EM+ 
Sbjct: 734  PVLATGNVHYLEPEEEIYREIIVRSLGQGAIINRTIGHGENAQPAPLPKAHFRTTNEMLD 793

Query: 263  IFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F+ L E L      ENT  +A     +  V   +   FI+K  + +             
Sbjct: 794  EFAFLGEDLARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEETVA------------ 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQ-RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
               E+   +     G    D    R++ EL  I    F+  +L     +  + +    VG
Sbjct: 842  ---ELTYQKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQLLVHRSNERGYLVG 898

Query: 376  PGRGSGAGSVTAYALTITDIDPL---------RFS------------------------- 401
              RGS   S  A  + IT+++PL         ++S                         
Sbjct: 899  -SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPNKDCPNCGHQ 957

Query: 402  -------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ A
Sbjct: 958  LSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAA 1017

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  +  + +  R                              D  V+RL   
Sbjct: 1018 KTAYGFV-KGYERDFGKYYR------------------------------DAEVERL--- 1043

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMK 561
            +Q   G+ R    H  GIV+        +P Y DV    PV             T FN  
Sbjct: 1044 AQGAAGVKRTTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFH 1095

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG+ 
Sbjct: 1096 DIDE-NVLKLDVLGHDDPTMIRKLQDLSG-----IDPNDIPMDDPGVMALFSGTDILGV- 1148

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              E  G    + G+       +  +V    P     ++  +   +G +  + +   LI  
Sbjct: 1149 TPEQIGTSTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKA 1208

Query: 681  MLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             + +   VI  ++ +M     A L    + +  + +R+ M  KI EE   ++  +I    
Sbjct: 1209 GIADLSTVIGCRDDIMVYLMHAGLDPKMAFTIMERVRKGMWLKIPEE---ERNGYIEAMK 1265

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             N + +       E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1266 ANNVPEWY----IESCGKIK-YMFPKAHAAAYVMMALRVAYFKVHHPLYYYCAYFSI 1317


>gi|77405656|ref|ZP_00782744.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae H36B]
 gi|77175729|gb|EAO78510.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae H36B]
          Length = 1468

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 151/760 (19%), Positives = 278/760 (36%), Gaps = 179/760 (23%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVVSQKD-RPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  ED    ++++      A+ + T+   +D +P   P  + +  +EM+ 
Sbjct: 739  PVLATGNVHYIEPEDEIYREIIVRSLGQGAMINRTIGRGEDAQPAPLPKAHFRTTNEMLD 798

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
             F+ L + L   + +    +F          RF + E        + +L    V   E R
Sbjct: 799  EFAFLGKDLAYEIVVTNTNTFA--------DRFEDVEV------VKGDLYTPFVDRAEER 844

Query: 323  LAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            +A+   AK +             R++ EL  I    F+  +L     +Q + +    VG 
Sbjct: 845  VAELTYAKAFEIYGNPLPDIIDLRIEKELASILGNGFAVIYLASQMLVQRSNERGYLVG- 903

Query: 377  GRGSGAGSVTAYALTITDIDPL------------RF------------------------ 400
             RGS   S  A  + IT+++P+             F                        
Sbjct: 904  SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSCGSGYDLPNKNCPKCGTLY 963

Query: 401  -----SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K
Sbjct: 964  KKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEEYAFRAGTVGTVAEK 1023

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V +  +  Y++                                 D  V+RL   +
Sbjct: 1024 TAFGFV-KGYERDYNKF------------------------------YNDAEVERL---A 1049

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GIV+        +P Y DV    PV             T FN   
Sbjct: 1050 TGAAGVKRSTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDMTAAWQTTHFNFHD 1101

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            I++  ++K D LG    T+++K  D        +D S I  DD +   L +    LG+ +
Sbjct: 1102 IDE-NVLKLDILGHDDPTMIRKLQDLSG-----IDPSNILPDDPDVMKLFSGTEVLGVTE 1155

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPM 681
             E  G    + G+       +  +V+   P     ++  +   +G +  + +   LI   
Sbjct: 1156 -EQIGTPTGMLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKEG 1214

Query: 682  LKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +     VI  ++ +M     A L    + +  + +R+ +  KI E+   ++  +I     
Sbjct: 1215 IATLSTVIGCRDDIMVYLMHAGLQPKMAFTIMERVRKGLWLKISED---ERNGYIQAMRD 1271

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA-------- 790
            N +         E   K   Y F K+HAAAY +++ + A+ K HYP+ +  A        
Sbjct: 1272 NNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHYPIFYYCAYFSIRAKA 1326

Query: 791  ----SMTLEMDNVEKIKKFCQDARQFN------------IQIMPPSVN------------ 822
                +M+  +D V+   K   + RQ N            ++++   +             
Sbjct: 1327 FELRTMSAGLDAVKARMKDITEKRQRNEATNVENDLFTTLELVNEMLERGFKFGKLDLYR 1386

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            +   DF + ++ +     A++G+G   A+ I+ A  D  F
Sbjct: 1387 SHATDFIIEEDTLIPPFVAMEGLGENVAKQIVRAREDGEF 1426


>gi|325843612|ref|ZP_08168008.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
            sp. HGF1]
 gi|325489298|gb|EGC91675.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
            sp. HGF1]
          Length = 1528

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 113/569 (19%), Positives = 209/569 (36%), Gaps = 160/569 (28%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL      +PD D++F  + +     Y +  +G +   +  T G++  K A   V  
Sbjct: 1019 FETFLGFKGDKVPDIDLNFSGEYQPVAHLYCREVFGDDFAFRAGTIGTVAEKTAFGYV-- 1076

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
                                      +   +D+  RE R A+  ++R+   ++  EG+ R
Sbjct: 1077 --------------------------KGFLEDTN-REMRTAE--IERM---AKGCEGVRR 1104

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
             +  H  GI++        VP Y D+    P+             T F+   I    L+K
Sbjct: 1105 TSGQHPGGIIV--------VPNYMDIYDVTPIQYPADDPTAEWRTTHFDFHSIHD-NLLK 1155

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKG 616
             D LG    T+++   D        +D   IP DD E Y L               +T G
Sbjct: 1156 LDILGHDDPTVIRYLQDISG-----IDPKDIPTDDPEVYKLFYSTESLGVTPEQIRSTTG 1210

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-----DNIVVYNNRKNGKEKI 671
            + G+ +  +  +R  LE  +P    +++ +  L     +      ++V     K GK + 
Sbjct: 1211 SYGVPEFGTPFVRNMLEDTKPKTFAELVKISGLSHGTDVWLNNAADLVSGKYDKFGKVEF 1270

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-------KKIKEE 724
             ++    D        +++Y    +    L    +    + +R+ +        K+ +EE
Sbjct: 1271 KNVIGCRD-------DIMVY----LMYGGLEPALAFKIMEFVRKGLASKNPDGWKEFEEE 1319

Query: 725  MDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            M K K  E +I    +                    Y F K+HA AY +++ + AW K H
Sbjct: 1320 MRKHKIPEWYIWSCGQ------------------IKYMFPKAHATAYVLMAIRIAWFKVH 1361

Query: 783  YPVEFLAASMT-----LEMDNVEK----IKKFCQDARQFNIQIMPPSVN----------- 822
            +P+ +  A  +      EM+ + K    I+K   +  +      P   N           
Sbjct: 1362 HPIYYYCAYFSKRADVFEMETMIKGPDAIRKRLDEIEEKGFDATPKEKNLVTILEIALEM 1421

Query: 823  --------------TPCVDFKVGDN--RIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
                          +  VDFK+ ++   +     A+ G+G   AR I+ A  + PF +++
Sbjct: 1422 TERGFYFQNFNIEESNAVDFKISEDGKSLIPPFTALDGLGENVARQIVAAREEAPFVTIK 1481

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            +   R    K+++ ++E L     ++ FG
Sbjct: 1482 EVQQR---GKVSKALIEKLQL---MNVFG 1504


>gi|293374694|ref|ZP_06621002.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
            sanguinis PC909]
 gi|292646608|gb|EFF64610.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
            sanguinis PC909]
          Length = 1528

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 113/569 (19%), Positives = 209/569 (36%), Gaps = 160/569 (28%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL      +PD D++F  + +     Y +  +G +   +  T G++  K A   V  
Sbjct: 1019 FETFLGFKGDKVPDIDLNFSGEYQPVAHLYCREVFGDDFAFRAGTIGTVAEKTAFGYV-- 1076

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
                                      +   +D+  RE R A+  ++R+   ++  EG+ R
Sbjct: 1077 --------------------------KGFLEDTN-REMRTAE--IERM---AKGCEGVRR 1104

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
             +  H  GI++        VP Y D+    P+             T F+   I    L+K
Sbjct: 1105 TSGQHPGGIIV--------VPNYMDIYDVTPIQYPADDPTAEWRTTHFDFHSIHD-NLLK 1155

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKG 616
             D LG    T+++   D        +D   IP DD E Y L               +T G
Sbjct: 1156 LDILGHDDPTVIRYLQDISG-----IDPKDIPTDDPEVYKLFYSTESLGVTPEQIRSTTG 1210

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-----DNIVVYNNRKNGKEKI 671
            + G+ +  +  +R  LE  +P    +++ +  L     +      ++V     K GK + 
Sbjct: 1211 SYGVPEFGTPFVRNMLEDTKPKTFAELVKISGLSHGTDVWLNNAADLVSGKYDKFGKVEF 1270

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-------KKIKEE 724
             ++    D        +++Y    +    L    +    + +R+ +        K+ +EE
Sbjct: 1271 KNVIGCRD-------DIMVY----LMYGGLEPALAFKIMEFVRKGLASKNPDGWKEFEEE 1319

Query: 725  MDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            M K K  E +I    +                    Y F K+HA AY +++ + AW K H
Sbjct: 1320 MRKHKIPEWYIWSCGQ------------------IKYMFPKAHATAYVLMAIRIAWFKVH 1361

Query: 783  YPVEFLAASMT-----LEMDNVEK----IKKFCQDARQFNIQIMPPSVN----------- 822
            +P+ +  A  +      EM+ + K    I+K   +  +      P   N           
Sbjct: 1362 HPIYYYCAYFSKRADVFEMETMIKGPDAIRKRLDEIEEKGFDATPKEKNLVTILEIALEM 1421

Query: 823  --------------TPCVDFKVGDN--RIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
                          +  VDFK+ ++   +     A+ G+G   AR I+ A  + PF +++
Sbjct: 1422 TERGFYFQNFNIEESNAVDFKISEDGKSLIPPFTALDGLGENVARQIVAAREEAPFVTIK 1481

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            +   R    K+++ ++E L     ++ FG
Sbjct: 1482 EVQQR---GKVSKALIEKLQL---MNVFG 1504


>gi|212696923|ref|ZP_03305051.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676213|gb|EEB35820.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 1010

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 157/857 (18%), Positives = 315/857 (36%), Gaps = 207/857 (24%)

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK--------LFGDRLYVNLQRHRGYD 193
           EGLI+ +GG  G + +A   + S+    ++  F          +F D L     R++   
Sbjct: 228 EGLIIGSGGKDGLLFKAIRDDYSEEKIDKICEFFDFFQIEALGVFADDLENGSIRNKEQI 287

Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                ++++L   H+  +VAT +  ++ ++DY   ++L                  P +Y
Sbjct: 288 IEINKKIIELGKKHDKLVVATGSVRYMEKKDYVLRNILHKGQFFHYREN------NPLYY 341

Query: 254 LKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           LK  +EM+  F  L +       ++NT++I+ +   ++ +     P  IE       K  
Sbjct: 342 LKTTNEMLDEFYYLDDKTKMEVVIDNTIKISDQIESVMPIPHETFPPKIEGS----DKRL 397

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
           ++    KA++     L +            + RLD EL+ I    ++  ++I  + ++ +
Sbjct: 398 KDTTYEKAISIYGDPLPELV----------KTRLDKELDSIISNGYAVLYIIAKELVEKS 447

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
            ++   VG  RGS   S  A    IT+++PL                             
Sbjct: 448 NRDGYLVG-SRGSVGSSFAATMANITEVNPLAPHYICPNCKHSEFITDGSIGAGIDLPDK 506

Query: 400 -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                          + FE FL  +    PD D++F  + +  + +Y +  +G  +V + 
Sbjct: 507 TCPKCGTEMNKDGHDIPFEVFLGFEGDKEPDIDLNFAGEYQPTIHKYTEELFGEGKVFRA 566

Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
            T G+++   A   + + ++                                 E  L++ 
Sbjct: 567 GTIGTIKDNTAFGYIKKYMED-------------------------------NELTLSNA 595

Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMK 561
            + +     + L  + R    H  G++I   D+ +    P+     D + D+  T F   
Sbjct: 596 QIRKY---QRGLFDVKRTTGQHPGGLMIVPNDKEIYDFSPVQYPADDGKDDIKTTHFTYN 652

Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK------ 615
            +    ++K D LG    T+++   D      +K+ +     DD    ++ ++       
Sbjct: 653 MMHGV-ILKLDLLGHDVPTIIRSLQDLTNTDPLKLQM-----DDENVMNIFSSTKPLNIK 706

Query: 616 --------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
                   GTLGI +  +S +R  L+   P    ++  +  L       ++ + N +   
Sbjct: 707 YDFSNNEIGTLGIPEFGTSFVRGMLKDTFPTKFSEMTRISGLSHGT---DVWLNNAQDLV 763

Query: 668 KEKIVSIHPLI---DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           K K      +I   D ++     + + +++  QI +             +   GK++ EE
Sbjct: 764 KSKTAGFDQIISTRDDIMNSLINLGLDKKKSFQIME-------------KVRKGKELSEE 810

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
                   +S   +N +      +  ++      Y F K+HA AY ++SY+ A+ K +YP
Sbjct: 811 T-------LSYMRENKVPDWYIDSCLKI-----KYLFPKAHAVAYCLMSYRIAYYKVYYP 858

Query: 785 VEFLAA-------------------SMTLEMDNVEKIKKFCQDARQFNIQ-IMPPSVNTP 824
             F A                    S+   ++ + +++K  Q  R+ N++ ++  +    
Sbjct: 859 KAFYATYFSTKLNDFQYSVIVKGLKSIQYALNEINQLEKPTQ--REKNLRSLLEVAEEMA 916

Query: 825 CVDFKVGDNRIYYS----------------LAAIKGVGTTTARHIMEASADKPFDSLEDF 868
             D K+    +Y S                L+A+  V    A+ I+E      F S+ED 
Sbjct: 917 ARDIKIKKADLYKSEAVKFILDEDGEILPPLSAVDDVSEAMAKDIVEEREKTKFISIEDL 976

Query: 869 CSRVDSKKLNRRVLESL 885
             R     LN+  L SL
Sbjct: 977 KKRT---SLNKNALNSL 990


>gi|319745868|gb|EFV98158.1| DNA polymerase III PolC [Streptococcus agalactiae ATCC 13813]
          Length = 1468

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 151/760 (19%), Positives = 278/760 (36%), Gaps = 179/760 (23%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVVSQKD-RPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  ED    ++++      A+ + T+   +D +P   P  + +  +EM+ 
Sbjct: 739  PVLATGNVHYIEPEDEIYREIIVRSLGQGAMINRTIGRGEDAQPAPLPKAHFRTTNEMLD 798

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
             F+ L + L   + +    +F          RF + E        + +L    V   E R
Sbjct: 799  EFAFLGKDLAYEIVVTNTNTFA--------DRFEDVEV------VKGDLYTPFVDRAEER 844

Query: 323  LAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            +A+   AK +             R++ EL  I    F+  +L     +Q + +    VG 
Sbjct: 845  VAELTYAKAFEIYGNPLPDIIDLRIEKELASILGNGFAVIYLASQMLVQRSNERGYLVG- 903

Query: 377  GRGSGAGSVTAYALTITDIDPL------------RF------------------------ 400
             RGS   S  A  + IT+++P+             F                        
Sbjct: 904  SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSCGSGYDLPNKNCPKCGTLY 963

Query: 401  -----SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K
Sbjct: 964  KKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEEYAFRAGTVGTVAEK 1023

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V +  +  Y++                                 D  V+RL   +
Sbjct: 1024 TAFGFV-KGYERDYNKF------------------------------YNDAEVERL---A 1049

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GIV+        +P Y DV    PV             T FN   
Sbjct: 1050 TGAAGVKRSTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDMTAAWQTTHFNFHD 1101

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            I++  ++K D LG    T+++K  D        +D S I  DD +   L +    LG+ +
Sbjct: 1102 IDE-NVLKLDILGHDDPTMIRKLQDLSG-----IDPSNILPDDPDVMKLFSGTEVLGVTE 1155

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPM 681
             E  G    + G+       +  +V+   P     ++  +   +G +  + +   LI   
Sbjct: 1156 -EQIGTPTGMLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKEG 1214

Query: 682  LKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +     VI  ++ +M     A L    + +  + +R+ +  KI E+   ++  +I     
Sbjct: 1215 IATLSTVIGCRDDIMVYLMHAGLQPKMAFTIMERVRKGLWLKISED---ERNGYIQAMRD 1271

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA-------- 790
            N +         E   K   Y F K+HAAAY +++ + A+ K HYP+ +  A        
Sbjct: 1272 NNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHYPIFYYCAYFSIRAKA 1326

Query: 791  ----SMTLEMDNVEKIKKFCQDARQFN------------IQIMPPSVN------------ 822
                +M+  +D V+   K   + RQ N            ++++   +             
Sbjct: 1327 FELRTMSAGLDAVKARMKDITEKRQRNEATNVENDLFTTLELVNEMLERGFKFGKLDLYR 1386

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            +   DF + ++ +     A++G+G   A+ I+ A  D  F
Sbjct: 1387 SHATDFIIEEDTLIPPFVAMEGLGENVAKQIVRAREDGEF 1426


>gi|238916793|ref|YP_002930310.1| DNA polymerase III subunit alpha, the Gram-positive type [Eubacterium
            eligens ATCC 27750]
 gi|238872153|gb|ACR71863.1| DNA polymerase III subunit alpha, the Gram-positive type [Eubacterium
            eligens ATCC 27750]
          Length = 1513

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 162/796 (20%), Positives = 284/796 (35%), Gaps = 140/796 (17%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSI-----VLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            D D+ D  K+  +GK     +  +     ++L S   G   L  LVS  +L     +  +
Sbjct: 637  DRDIPDVDKLNEEGKMDENAIKKLHQYHCIILASNEMGRINLYRLVSASHL-QYFNRFPK 695

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-----GDRLYVN 185
            I  S + +   EGLI+ +   +G + R+     S+    R++ F         G+  ++ 
Sbjct: 696  IPKSLVNQY-REGLIIGSACEAGELFRSLVNGRSEAEIARIVNFYDYLEIQPIGNNRFM- 753

Query: 186  LQRHRGYDRYRES------QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            +++   Y +  E       ++V+L      P+VAT +  FL+ ED     ++MA      
Sbjct: 754  IEKEDCYVQNEEDLRNLNRRIVELGDKFGKPVVATCDVHFLNPEDEVYRRIIMAGK---- 809

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILP 293
                D     P  YL    EM+     L         + NT +I   C  I  V     P
Sbjct: 810  -GFDDADNQAP-LYLHTTEEMLHECDYLGSDKAYEVVVTNTNKIMDMCEEIEPVRPDKCP 867

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             FIE     ++   EN  R   + G E+             Q   +RL+ ELN I    +
Sbjct: 868  PFIENSDQMLRTICEN--RAHEIYGPEL------------PQIVTERLERELNSIISNGY 913

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------- 399
            S  ++I    +  +  +   VG  RGS   S+ A    IT+++PL               
Sbjct: 914  SVMYIIAQKLVWKSNDDGYLVG-SRGSVGSSLAATMAGITEVNPLSPHYLCPKCYYNDFY 972

Query: 400  -------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                                           F + FE FL       PD D++F  + + 
Sbjct: 973  SDEVKAFAGGAGCDMPDKICPKCGAKLNKMGFDIPFETFLGFKGNKEPDIDLNFSNEYQS 1032

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +   Y +  +G  +  +  T G++  K A         M Y +       +   P     
Sbjct: 1033 KAHAYTEVIFGKGQTFKAGTIGTVAEKTAY-----GFVMKYFEEKSAKNALEGKP----- 1082

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEG---LYRHASTHAAGIV---IGDRPLSQL 542
                             P V R  EI +  EG   + R    H  GIV   IG+  +   
Sbjct: 1083 -----------------PIVKRKCEIERIAEGCIDIRRTTGQHPGGIVVLPIGEE-IHSF 1124

Query: 543  VPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             P+     D+ + +  T F+   I+   L+K D LG    T+++     + Q    +D  
Sbjct: 1125 TPVQHPANDMTTSIVTTHFDYHSIDH-NLLKLDILGHLDPTMIR-----MLQDLTGIDPL 1178

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP D  E   L      LGI   +  G +    G+     +  + ++   +P    ++V
Sbjct: 1179 EIPLDSKEVMSLFQNTSALGIKPEDIGGTKLGALGIPEFGTDFAMQMLMDTKPQYFSDLV 1238

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA-DVLRRAMG 718
                  +G +  +     +    K T    I     + I  +  G    E+  ++     
Sbjct: 1239 RIAGLAHGTDVWLGNAQTLIKEGKATISTAICTRDDIMIYLIQKGLDSEESFKIMEMVRK 1298

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K+     K+   +      +G+      + +    +   Y F K+HAAAY +++++ A+
Sbjct: 1299 GKVASGKCKEWPEWKQDMIDHGVP-----DWYIWSCERIKYMFPKAHAAAYVMMAWRVAY 1353

Query: 779  MKTHYPVEFLAASMTL 794
             K  YP+ +  A  ++
Sbjct: 1354 CKVFYPLAYYTAYFSI 1369


>gi|329767541|ref|ZP_08259064.1| DNA polymerase III [Gemella haemolysans M341]
 gi|328835875|gb|EGF85597.1| DNA polymerase III [Gemella haemolysans M341]
          Length = 1449

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 187/904 (20%), Positives = 323/904 (35%), Gaps = 197/904 (21%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            +ID + +L++ ++    FP      +LV  A+G + L  LVS             I  S 
Sbjct: 603  EIDEKIDLELAHKRSRTFPCS----ILVKNAKGLKDLFRLVSYSCTKYLNSAKPTIPRSL 658

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFF---FNSSQVAEKRLLTFK---KLFGDRLYVNLQRH 189
            L++   + LI      SG  D   F    NS +   + ++ F    ++     Y N  R+
Sbjct: 659  LEQYREDLLI-----GSGNGDNEVFEELLNSKEAKVENIIDFYDYIEIQPKHHYANFIRN 713

Query: 190  RGYDRYRE-----SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                   E      ++++LA   E  +VAT +  +L E  +    +L     S   +   
Sbjct: 714  ERISDNAELEEILKKLIKLAEKKEKIVVATGDCYYLDEYQHVYRQILRLTVKSNPGAHDL 773

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEK 298
            +P  T         EM+  FS L E L      ENT +I      ++ +   +    IE 
Sbjct: 774  KPMAT----FLTTDEMLKEFSYLDEQLREEIVIENTHKINDMIELVIPLKDKLYTPNIEG 829

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSG 355
              D        E+RN         L+     K Y  Q      +RL+ EL+ I    FS 
Sbjct: 830  AAD--------EVRN---------LSYDMAHKIYGEQLPEIVEKRLEKELSSIIGNGFSV 872

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------- 399
             +LI    ++ +  +   VG  RGS   S+ A  + IT+++PL                 
Sbjct: 873  VYLISHKLVKKSLDDGYLVG-SRGSVGSSLVATMMEITEVNPLAPHYVCPKCKHSEFFLN 931

Query: 400  ------FSLL-------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                  F L                    FE FL  +   +PD D++F  + +     + 
Sbjct: 932  AEYASGFDLPNKNCPHCDVKMIKDGQDIPFETFLGFNGDKVPDIDLNFSGEYQATAHNFT 991

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            +  +G + V +  T  ++  K A      +    Y + + +                   
Sbjct: 992  KEIFGEDYVYRAGTISTVAEKTAY-----SFTRDYYEKNEV------------------- 1027

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDV 549
                 E R  D  ++R   I+   EG  R    H  GI++   D  +    P      D 
Sbjct: 1028 -----EKRSID--IER---IAAGCEGSKRTTGQHPGGILVVPNDMDIFDFTPYQFPADDE 1077

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
             S    T F+   I    ++KFD LG    T+++K  D        +D   I   D E  
Sbjct: 1078 TSPWRTTHFDFHSIHD-NILKFDILGHDDPTMIRKLQDLSG-----IDPKTIDVSDPEVM 1131

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             + +T   LG+ + +         G+       +I ++   +P     +V  +   +G +
Sbjct: 1132 GIFSTVEALGVTRDQVDSASGTF-GIPEFGTNFVIQMLDDTKPTTYSELVQISGLSHGTD 1190

Query: 670  KIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEM 725
              + +   LI     E + VI  ++ +M     A L  G S    + +R+  GK + E+ 
Sbjct: 1191 VWLGNAQELIKNGTCELKDVIGCRDDIMVYLIHAGLEEGLSFKIMESVRK--GKGLTEDF 1248

Query: 726  DKQKERFISGASKNGISKTIAVNIFELL---AKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            +K                 I  N+ E      K   Y F K+HA AY +++ + AW K H
Sbjct: 1249 EKA---------------MIDNNVPEWYIDSCKKIKYMFPKAHACAYVLMALRIAWFKVH 1293

Query: 783  YPVEFLAASMTLEMDNVE-------------KIKKF-CQDARQFNIQIMPPSVN------ 822
             P+ +  A  ++   + +             KIK+    D  + + +     V+      
Sbjct: 1294 QPLTYYCAYYSVRASDFDIITVVKGAETLKAKIKEIKTTDKNELSNKDKDALVSYEIANE 1353

Query: 823  ---------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
                           +   D+ +  N +    + + G+G   A  I++A  +K F S+ED
Sbjct: 1354 MMERGFTFSKVDLEKSASHDYIIEGNTLIPPFSIVPGLGDNVANKIVQAREEKAFLSIED 1413

Query: 868  FCSR 871
            F  R
Sbjct: 1414 FSKR 1417


>gi|77412300|ref|ZP_00788615.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae CJB111]
 gi|77161647|gb|EAO72643.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae CJB111]
          Length = 1468

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 151/760 (19%), Positives = 278/760 (36%), Gaps = 179/760 (23%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVVSQKD-RPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  ED    ++++      A+ + T+   +D +P   P  + +  +EM+ 
Sbjct: 739  PVLATGNVHYIEPEDEIYREIIVRSLGQGAMINRTIGRGEDAQPAPLPKAHFRTTNEMLD 798

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
             F+ L + L   + +    +F          RF + E        + +L    V   E R
Sbjct: 799  EFAFLGKDLAYEIVVTNTNTFA--------DRFEDVEV------VKGDLYTPFVDRAEER 844

Query: 323  LAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            +A+   AK +             R++ EL  I    F+  +L     +Q + +    VG 
Sbjct: 845  VAELTYAKAFEIYGNPLPDIIDLRIEKELASILGNGFAVIYLASQMLVQRSNERGYLVG- 903

Query: 377  GRGSGAGSVTAYALTITDIDPL------------RF------------------------ 400
             RGS   S  A  + IT+++P+             F                        
Sbjct: 904  SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSCGSGYDLPNKNCPKCGTLY 963

Query: 401  -----SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K
Sbjct: 964  KKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEEYAFRAGTVGTVAEK 1023

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V +  +  Y++                                 D  V+RL   +
Sbjct: 1024 TAFGFV-KGYERDYNKF------------------------------YNDAEVERL---A 1049

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GIV+        +P Y DV    PV             T FN   
Sbjct: 1050 TGAAGVKRSTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDMTAAWQTTHFNFHD 1101

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            I++  ++K D LG    T+++K  D        +D S I  DD +   L +    LG+ +
Sbjct: 1102 IDE-NVLKLDILGHDDPTMIRKLQDLSG-----IDPSNILPDDPDVMKLFSGTEVLGVTE 1155

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPM 681
             E  G    + G+       +  +V+   P     ++  +   +G +  + +   LI   
Sbjct: 1156 -EQIGTPTGMLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKEG 1214

Query: 682  LKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +     VI  ++ +M     A L    + +  + +R+ +  KI E+   ++  +I     
Sbjct: 1215 IATLSTVIGCRDDIMVYLMHAGLQPKMAFTIMERVRKGLWLKISED---ERNGYIQAMRD 1271

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA-------- 790
            N +         E   K   Y F K+HAAAY +++ + A+ K HYP+ +  A        
Sbjct: 1272 NNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHYPIFYYCAYFSIRAKA 1326

Query: 791  ----SMTLEMDNVEKIKKFCQDARQFN------------IQIMPPSVN------------ 822
                +M+  +D V+   K   + RQ N            ++++   +             
Sbjct: 1327 FELRTMSAGLDAVKARMKDITEKRQRNEATNVENDLFTTLELVNEMLERGFKFGKLDLYR 1386

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            +   DF + ++ +     A++G+G   A+ I+ A  D  F
Sbjct: 1387 SHATDFIIEEDTLIPPFVAMEGLGENVAKQIVRAREDGEF 1426


>gi|22538049|ref|NP_688900.1| DNA polymerase III PolC [Streptococcus agalactiae 2603V/R]
 gi|25011937|ref|NP_736332.1| DNA polymerase III PolC [Streptococcus agalactiae NEM316]
 gi|76798733|ref|ZP_00780952.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae 18RS21]
 gi|54036993|sp|P63984|DPO3_STRA5 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|54040954|sp|P63983|DPO3_STRA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|22534952|gb|AAN00773.1|AE014277_21 DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae 2603V/R]
 gi|24413479|emb|CAD47557.1| DNA polymerase III (alpha subunit) [Streptococcus agalactiae NEM316]
 gi|76585912|gb|EAO62451.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae 18RS21]
          Length = 1468

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 151/760 (19%), Positives = 278/760 (36%), Gaps = 179/760 (23%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVVSQKD-RPRVTPDHYLKNRSEMVS 262
            P++AT N  ++  ED    ++++      A+ + T+   +D +P   P  + +  +EM+ 
Sbjct: 739  PVLATGNVHYIEPEDEIYREIIVRSLGQGAMINRTIGRGEDAQPAPLPKAHFRTTNEMLD 798

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
             F+ L + L   + +    +F          RF + E        + +L    V   E R
Sbjct: 799  EFAFLGKDLAYEIVVTNTNTFA--------DRFEDVEV------VKGDLYTPFVDRAEER 844

Query: 323  LAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            +A+   AK +             R++ EL  I    F+  +L     +Q + +    VG 
Sbjct: 845  VAELTYAKAFEIYGNPLPDIIDLRIEKELASILGNGFAVIYLASQMLVQRSNERGYLVG- 903

Query: 377  GRGSGAGSVTAYALTITDIDPL------------RF------------------------ 400
             RGS   S  A  + IT+++P+             F                        
Sbjct: 904  SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSCGSGYDLPNKNCPKCGTLY 963

Query: 401  -----SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K
Sbjct: 964  KKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEEYAFRAGTVGTVAEK 1023

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V +  +  Y++                                 D  V+RL   +
Sbjct: 1024 TAFGFV-KGYERDYNKF------------------------------YNDAEVERL---A 1049

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKW 562
                G+ R    H  GIV+        +P Y DV    PV             T FN   
Sbjct: 1050 TGAAGVKRSTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDMTAAWQTTHFNFHD 1101

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            I++  ++K D LG    T+++K  D        +D S I  DD +   L +    LG+ +
Sbjct: 1102 IDE-NVLKLDILGHDDPTMIRKLQDLSG-----IDPSNILPDDPDVMKLFSGTEVLGVTE 1155

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPM 681
             E  G    + G+       +  +V+   P     ++  +   +G +  + +   LI   
Sbjct: 1156 -EQIGTPTGMLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKEG 1214

Query: 682  LKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +     VI  ++ +M     A L    + +  + +R+ +  KI E+   ++  +I     
Sbjct: 1215 IATLSTVIGCRDDIMVYLMHAGLQPKMAFTIMERVRKGLWLKISED---ERNGYIQAMRD 1271

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA-------- 790
            N +         E   K   Y F K+HAAAY +++ + A+ K HYP+ +  A        
Sbjct: 1272 NNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHYPIFYYCAYFSIRAKA 1326

Query: 791  ----SMTLEMDNVEKIKKFCQDARQFN------------IQIMPPSVN------------ 822
                +M+  +D V+   K   + RQ N            ++++   +             
Sbjct: 1327 FELRTMSAGLDAVKARMKDITEKRQRNEATNVENDLFTTLELVNEMLERGFKFGKLDLYR 1386

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            +   DF + ++ +     A++G+G   A+ I+ A  D  F
Sbjct: 1387 SHATDFIIEEDTLIPPFVAMEGLGENVAKQIVRAREDGEF 1426


>gi|281492785|ref|YP_003354765.1| DNA polymerase III subunit alpha [Lactococcus lactis subsp. lactis
            KF147]
 gi|281376437|gb|ADA65923.1| DNA polymerase III, alpha subunit [Lactococcus lactis subsp. lactis
            KF147]
          Length = 1638

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 158/787 (20%), Positives = 299/787 (37%), Gaps = 173/787 (21%)

Query: 99   IVLLVSTAEGYQRLIELVS----RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
            + L   T EG + L ++VS    + Y         R+  S L E   EGL++   GS+  
Sbjct: 790  VTLYAKTQEGLKNLFKIVSFGNVKYY-----AGLPRVPRSVL-EANREGLLV---GSACE 840

Query: 155  IDRAF-------FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-----SQVVQ 202
            I   F       F  + ++A  +   F ++F   LY +L     +   +E       +++
Sbjct: 841  IGEVFDAAINKTFEETLEIA--KFYDFIEVFPPALYRSLVVGGSFKSEKELEQTLKDLIK 898

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLM-------AVAHSTVVSQKDRPRVTPDHYLK 255
            +  T + P++AT N  +L+ ED    ++++        +  +    +  +P   P+ + +
Sbjct: 899  IGKTLDKPVLATGNLHYLNPEDAIYREIIVRSLGLGAEINWTQGHGEHAKPLPLPEAHFR 958

Query: 256  NRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPIL-PRFIEKECDDIQKEEE 308
               EM+  FS L E       ++NT ++A     +  V   +  P+ +    D  +  EE
Sbjct: 959  TTDEMLEAFSFLDEKTAREIVIDNTQKLADEFDVLTPVRDDLYTPKMV---FDGGETSEE 1015

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDY-RQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              +R        +   +     G    D    RL+ EL  I    FS  ++I  + ++ +
Sbjct: 1016 RIVR--------LTYEKAHEWYGNPLPDIIDARLEKELRSILGNGFSVVYIISQELVKRS 1067

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
                  VG  RGS   S+ A  + IT+++PL                             
Sbjct: 1068 NDRGYIVG-SRGSVGSSLVATMIGITEVNPLAPHYRCPECQYFECYDDGSFGSGYDMPDK 1126

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D +      V++ +G +   + 
Sbjct: 1127 NCPKCDHKLIKDGHDIPFETFLGFKGDKVPDIDLNFSGDDQPLAHLDVRDIFGEDYAFRA 1186

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V +  +  Y Q                                 + 
Sbjct: 1187 GTIGTVAEKTAFGFV-KGYERDYDQF------------------------------YGNA 1215

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----------- 555
             +DRL   S    G+ R    H  GI++        +P Y DV    PV           
Sbjct: 1216 EIDRLAAGST---GVKRTTGQHPGGIIV--------IPNYMDVYDFSPVQFPADDVNAEW 1264

Query: 556  --TQFNMKWIEKAGLIKFDFLGLKTLTLLQK--SLDFLAQRGVKVDLSLIPFDDHETYHL 611
              T F+   I    ++K D LG    T+++K  SL  +  +        IP DD     L
Sbjct: 1265 QTTHFDFHAIHD-NILKLDILGHDDPTMIRKLQSLSGIVPQD-------IPMDDPGVMKL 1316

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
             T   +LG+ + E  G++    G+        + +++  +P    +++  +   +G +  
Sbjct: 1317 FTGTESLGLTE-EQLGVKLGTLGIPEMGTFTSMNMIAEAKPKNFADLLQISGLSHGTDVW 1375

Query: 672  V-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
              +   LI   + +   VI  ++ +M       L +G + +  + +R+ M  KI  E   
Sbjct: 1376 SGNAQDLIRSGIADLSSVIGCRDDIMVYLIHKGLENGLAFTIMERVRKGMWNKIPAE--- 1432

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++E+++    ++ + +       E  +K   Y F K+HAAAY +++ + A+ K H+P+ +
Sbjct: 1433 EREKYVEAMREHDVPEWY----IESCSKIK-YMFPKAHAAAYIMMALRVAYFKVHHPILY 1487

Query: 788  LAASMTL 794
              A  ++
Sbjct: 1488 YCAWFSI 1494


>gi|222152446|ref|YP_002561621.1| DNA polymerase III PolC [Streptococcus uberis 0140J]
 gi|222113257|emb|CAR40776.1| DNA polymerase III PolC-type [Streptococcus uberis 0140J]
          Length = 1465

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 159/418 (38%), Gaps = 94/418 (22%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K A   V +
Sbjct: 969  FETFLGFDGDKVPDIDLNFSGDDQPNAHLDVRDIFGEEYAFRAGTVGTVAEKTAYGFV-K 1027

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +  Y +  R                              D  VDRL   +    G+ R
Sbjct: 1028 GFERDYGKYYR------------------------------DAEVDRL---AAGAAGVKR 1054

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 1055 TTGQHPGGIVV--------IPNYMDVYDFTPVQYPAEDVTASWQTTHFNFHDIDE-NVLK 1105

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKG 616
             D LG    T+++K  D        +D   IP DD     L               T  G
Sbjct: 1106 LDILGHDDPTMIRKLQDLSG-----IDPKSIPADDPGVMALFSGTDILGVTPEQIGTPTG 1160

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
             LGI +  ++ +R  +    P    +++ L  L       ++ + N +   KE I ++  
Sbjct: 1161 MLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHG---TDVWLGNAQDLIKEGIATLKT 1217

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I         +++Y    +  A L    + +  + +R+ M  KI E+   ++  +I   
Sbjct: 1218 VIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRKGMWLKISED---ERNSYIQAM 1266

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             +N +         E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1267 RENNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHHPIMYYCAYFSI 1319



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++   ++  ++D  A    PAIAITD  N+ S      +A  AGI+ I 
Sbjct: 341 VELHAHTNMSTMDALPTVETLIDTAAKWGHPAIAITDHANVQSFPHGYHRARKAGIKAIF 400

Query: 72  GCQLDIDMQDNLKMTNQ 88
           G + +I ++D + ++ Q
Sbjct: 401 GLEANI-VEDKVPISYQ 416


>gi|15829146|ref|NP_326506.1| DNA polymerase III PolC [Mycoplasma pulmonis UAB CTIP]
 gi|14424449|sp|P47729|DPO3_MYCPU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|14090090|emb|CAC13848.1| DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII) [Mycoplasma
            pulmonis]
          Length = 1435

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 154/738 (20%), Positives = 271/738 (36%), Gaps = 173/738 (23%)

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILP 293
            H   + +KD     P+   K  +EM   FS L  PE +E   EI  +            P
Sbjct: 742  HPLFIIKKDMDTFYPEQIYKTTNEMKQEFSFLYDPELIE---EIVVKN-----------P 787

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA------QDYRQRLDFELNV 347
              I  + + IQ  ++ +L         ++L +      +        +   QR++ EL  
Sbjct: 788  NLISSQIEKIQVIKD-KLYTPKFDDSHIKLKKLVYENAWKKYGKNLPEIIEQRIEKELTP 846

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------- 399
            I    F   + I +  +Q +  +   VG  RGS   S+ A    IT+++PL         
Sbjct: 847  ILNYGFDVIYWISSILVQKSLSDGYLVG-SRGSIGSSLVATLSGITEVNPLAPHYICSKC 905

Query: 400  --FSLL-------------------------------FERFLNPDRMSMPDFDIDFCQDR 426
              F L+                               FE FL      +PD D++F  + 
Sbjct: 906  QYFELVKDPMTNSGFDLDDKKCPKCNSFLDKDGQTIPFETFLGFKADKVPDIDLNFSGEY 965

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            + ++   V+  +G +   +  T  ++  K A   + + L+                    
Sbjct: 966  QGKIHDEVKRLFGSKHTFRAGTISTVAEKTAYGYIKKYLET------------------- 1006

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVP 544
             SL              +D  VD L E   K  G+ R    H  GI+I   +  +    P
Sbjct: 1007 ASLD------------YSDNFVDFLTE---KSTGVKRTTGQHPGGIIIIPKEFDVEDFTP 1051

Query: 545  M---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            +     D  S    T F+   I    ++K D LG    T L+     + ++   V++  I
Sbjct: 1052 VNFPANDTESSWKTTHFDFHAIHD-NVLKLDILGHDDPTALK-----MLEKLTGVNVKDI 1105

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P  D +   + T+   LGI   E  G +    G+       +  ++S  +P    ++V  
Sbjct: 1106 PKKDEKIISIFTSPKALGISSEEILGEKTGALGIPEFGTNFVRQMLSEAKPKTFADLVSI 1165

Query: 662  NNRKNGKE-KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG----YSLSEADVLRRA 716
            +   +G +  I + H +I  + K    VI  ++ +M +  +  G     S +  + +R+ 
Sbjct: 1166 SGLSHGTDVWINNAHYIIQSLGKTLDQVISCRDDIM-VDLIKKGVPIDLSFTIMEQVRKG 1224

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             G  ++     QK + I    +N           E + K   Y F K+HA AY +++++ 
Sbjct: 1225 KGLSLE-----QKRKLIEHGIENWY--------IESMEKIK-YMFPKAHATAYVLMAWRV 1270

Query: 777  AWMKTHYPVEFLAA--SMTLEMDNVE-----------KIKKFC----------------- 806
            A+ K +YP+E+ A   S   E  ++E           KIK+                   
Sbjct: 1271 AFYKVYYPLEYYATYFSTRTEFFDIEIMSKDKLTLESKIKELAYRENLRNDNQLTTKEKN 1330

Query: 807  ----------QDARQFNIQIMPPSVNTPCVDFKVGDN--RIYYSLAAIKGVGTTTARHIM 854
                        AR FNIQ +   ++    D+ +  N   +      I G+G T A+ I+
Sbjct: 1331 TLPTLYIANEMKARGFNIQNINLKISL-ANDWIIDKNSKSLIPPFNVIDGLGETLAQKIV 1389

Query: 855  EASADKPFDSLEDFCSRV 872
            ++  +K F S+EDF +R 
Sbjct: 1390 DSRNEKEFLSVEDFINRT 1407


>gi|259503120|ref|ZP_05746022.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041]
 gi|259168986|gb|EEW53481.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041]
          Length = 1444

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 180/888 (20%), Positives = 319/888 (35%), Gaps = 207/888 (23%)

Query: 99   IVLLVSTAEGYQRLIELVS--RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
            + LL     G + L +LVS   +    +  +  R  L+  +E    GL++ T  SSG + 
Sbjct: 616  VTLLAQNQAGLKNLFKLVSLSNVRYFHRVPRIPRTVLTKYRE----GLLLGTACSSGEVF 671

Query: 157  RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV--------------VQ 202
             A        A +R   +        Y+ +Q    Y    E+ V              V+
Sbjct: 672  TAMMEKGYAEALRRARYYD-------YIEIQPRPNYAPLLETHVIADRDQLDDILQNMVK 724

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            L    +  +VAT +  +++  D     +L+ +   +  +++  RP V    + +   EM+
Sbjct: 725  LGAELKKKVVATGDVHYINPHDGIYRRILINSQGGANPLNRTKRPDV----HFRTTDEML 780

Query: 262  SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
              FS L       V +    +    + A I P   +K      K  E E++++       
Sbjct: 781  EEFSFLGADTAKRVVVENSHAIADMIDADIRP-VKDKLYTPHMKGAEQEIQDRT------ 833

Query: 322  RLAQGAIAKGYHAQDY----RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
                   AK ++        + R++ ELN I +  FS  +LI    +  + K+   VG  
Sbjct: 834  ----WNTAKAWYGNPLPKIVKDRVELELNSIVKNGFSVIYLIAQRLVAKSNKDGYLVG-S 888

Query: 378  RGSGAGSVTAYALTITDIDPL---------RFS--------------------------- 401
            RGS   SV A    IT+++PL         RF+                           
Sbjct: 889  RGSVGSSVVATLSGITEVNPLPPHYRCPQCRFAHFYTKGEYSSGFDLPERKCPKCGALLV 948

Query: 402  -----LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
                 + F+ FL      +PD D++F  D +     Y++  +G E V +  T G++  K 
Sbjct: 949  KDGHDIPFQTFLGFKGNKVPDIDLNFSGDYQSIAHNYMKVLFGEENVFRAGTIGTVADKT 1008

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A           Y  V    K    D           +D +FR A       DRL   +Q
Sbjct: 1009 A-----------YGYV----KAFERD-----------NDVQFRGA-----EEDRL---AQ 1034

Query: 517  KLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKF 571
               G+ R    H AGI+I   D  +    P+     D  +    T F+   I    ++K 
Sbjct: 1035 GATGVKRTTGQHPAGIIIVPDDMDIYDFTPVQYPADDQNAAWETTHFDFHSIHD-NILKM 1093

Query: 572  DFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGT 617
            D LG    T+++   D        +D   IP +D     L ++               GT
Sbjct: 1094 DILGHDDPTMIRALQDLSG-----IDPKTIPMNDPGVMALFSSPKILGVTEEQIQSKTGT 1148

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            LG+ +  +  +R  L+   P     ++ +  L        + + N ++  KE   +I  +
Sbjct: 1149 LGLPEFGTRFVRGMLDDTHPKNYSQLLQISGLSHG---TGVWLDNAQELIKEGTATIANV 1205

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            I         +I Y         L S  S    + +R+  G+ I +E   Q +    G  
Sbjct: 1206 IGCRDNIMTDLIHY--------GLDSETSFQVMEHVRK--GRGIPDEW--QSKMLKVGVP 1253

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            +  +   + +           Y F ++HAAAY +++ + A+ K ++P+ +  A  ++  D
Sbjct: 1254 QWYLDSCLKIK----------YMFPRAHAAAYVLMALRIAYFKVYFPLVYYCAFFSVRAD 1303

Query: 798  NVEKIK----KFCQDARQFNI----------------------QIMPPSVNTPCVDFKVG 831
            + + +     K    AR   I                      +++        VD +  
Sbjct: 1304 DFDIVAMAHGKEAVKARMAEISNKGNDASAKEKSLLTILELANEMLERGFKFKMVDLERS 1363

Query: 832  D--------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            D        + +     AI G+G + A+ I+ A  ++PF S E+   R
Sbjct: 1364 DASNWLIDGDSLIAPFRAIPGLGLSVAKQIVAAREERPFLSKEELADR 1411


>gi|312601484|gb|ADQ90739.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 168]
          Length = 1447

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 140/681 (20%), Positives = 253/681 (37%), Gaps = 174/681 (25%)

Query: 320  EVRLAQGAIAKGYHA------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            EV+L +    K Y        +    R+  EL  I    F   + I    +  AK     
Sbjct: 810  EVKLKEFVYKKAYEKYGRFLPKLIENRIKTELEPIINQGFHVVYWISKHIVTEAKSQGAI 869

Query: 374  VGPGRGSGAGSVTAYALTITDIDPL------------------RF--------------- 400
            V   RGS   S+ A+   ITD++PL                  +F               
Sbjct: 870  VD-SRGSVGSSIVAFLTGITDVNPLLPHYWCKKCSKVEFPKSQQFLSGYDLPDKNCLDCY 928

Query: 401  --------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
                    ++ FE FL  +   +PD D++F    + ++  +V+  +G   + +    G++
Sbjct: 929  KKMEKDGHNIPFETFLGFNVEKVPDIDLNFSGQTQLKMHDFVRTLFG---INKTFRAGTI 985

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
               A     G A ++   +  RL      DP   ++ +     S F  A L     D L 
Sbjct: 986  LTNAEKTVYGLARKLGEYRA-RL------DPKFDLNREV----SYFTSAFL-----DFL- 1028

Query: 513  EISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPM---YRDVRSDLPVTQFNMKWIEKAG 567
              + K +G+ R +  HA GI++   ++ +    P+     + +SD   T F+   +    
Sbjct: 1029 --ATKAQGVKRTSGKHAGGIIVIPQNQEIEDFTPINYPANNEKSDWKTTHFDYNALHD-N 1085

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT------------- 614
            L+K D LG    T+L   L       +K D   IP  D +   L  +             
Sbjct: 1086 LLKLDILGHDDPTIL---LHLEKLTNIKSDE--IPKSDPKILSLFRSCKELGISSDQILG 1140

Query: 615  --KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
               GT+GI +  +  +R+ L+  Q     DI+A+  L     +        + N ++ I+
Sbjct: 1141 EVTGTIGIPEFGTQFVRKMLQIAQVKSFADIVAICGLAHGTGV-------WQDNAEKLIL 1193

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE----EMDKQ 728
                +I+ ++     ++IY  Q     Q+   +++ E   +R+  G   +E    E+ K 
Sbjct: 1194 EKKHVINELISCRDDIMIYLLQKNIDHQV--AFNIMEN--VRKGKGLTDQEKELLELKKV 1249

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
               +I    K G                  Y F K+HA AYA+ +++ A+ K ++P+ F 
Sbjct: 1250 PSWYIESLQKIG------------------YLFPKAHAVAYAMKAWKIAYFKLYHPLAFY 1291

Query: 789  AASMTLEMDNVEKIKKFCQDARQFN---------------------------IQIMPPSV 821
            ++  ++  D V+ ++   Q A +                             IQ +  S+
Sbjct: 1292 SSYFSIRPD-VKDLETLIQPAEKIREKINILNKKRLESQKGIQQLSAKEKDLIQFLEISL 1350

Query: 822  NTPCVDFKV-----------------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
                  F++                  +N +     AI G+G   AR I++A   +PF S
Sbjct: 1351 ELKSRGFEIEKVSLEKSEAQEWIINKENNSLIPPFIAIDGIGDVNARKIVQARNLRPFSS 1410

Query: 865  LEDFCSRVDSKKLNRRVLESL 885
            +EDF  R ++   + + L+ L
Sbjct: 1411 IEDFEKRTETNSTSLKKLKEL 1431


>gi|322411039|gb|EFY01947.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
            dysgalactiae ATCC 27957]
          Length = 1465

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 94/418 (22%), Positives = 159/418 (38%), Gaps = 94/418 (22%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K A   V +
Sbjct: 969  FETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGAEYAFRAGTVGTVAEKTAYGFV-K 1027

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +  Y +  R                              D  VDRL   +    G+ R
Sbjct: 1028 GYERDYGKFYR------------------------------DAEVDRL---AAGAAGVKR 1054

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 1055 TTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLK 1105

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKG 616
             D LG    T+++K  D        +D   IP DD     L               T  G
Sbjct: 1106 LDILGHDDPTMIRKLQDLSG-----IDPITIPADDPGVMALFSGTEVLGVTPEQIGTPTG 1160

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
             LGI +  ++ +R  +    P    +++ L  L       ++ + N +   KE I ++  
Sbjct: 1161 MLGIPEFGTNFVRGMVNETHPTTFSELLQLSGLSHG---TDVWLGNAQDLIKEGIATLKT 1217

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I         +++Y    +  A L    + +  + +R+ +  KI EE   ++  +I   
Sbjct: 1218 VIGC----RDDIMVY----LMHAGLQPKMAFTIMERVRKGLWLKISEE---ERNGYIDAM 1266

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             KN +         E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1267 RKNNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHHPLMYYCAYFSI 1319


>gi|330982627|gb|EGH80730.1| error-prone DNA polymerase [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 325

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 85/378 (22%), Positives = 149/378 (39%), Gaps = 72/378 (19%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +  +  L   S++S   GA S   + ++       A+AITD   L   +   Q + + G+
Sbjct: 2   TSEYAELHCLSNFSFQRGASSARELFERAVRHGYKALAITDECTLAGIVRAWQASKSTGL 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS---------- 117
             I+G ++ I+                  P +VLLV    GY+ L  L++          
Sbjct: 62  PLIVGSEMHIE----------------NGPKVVLLVENQAGYEALCTLITVARRRAKKGE 105

Query: 118 -RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            R+   D       +   WL ++  +    L GG                   R L  ++
Sbjct: 106 YRVLREDFEPAPDGLLALWLPDLDGDAQACLAGG-------------------RWL--RE 144

Query: 177 LFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F +RL++ +  HRG  D  R + ++ LA +  +P VA+ +    +       D + A+ 
Sbjct: 145 RFTERLWLGVGLHRGPDDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIR 204

Query: 236 HSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
           H T V++         + +L+    +   + D    L  +V IARRC+F L         
Sbjct: 205 HHTTVAEAGHLLFANGERHLRPLDALSEHYPDW--LLAESVRIARRCTFDL--------- 253

Query: 295 FIEKECDDIQKEEENELRNK---AVAGLEVRLAQGAIAK--GYHAQDYRQRLDFELNVIA 349
                  D++ E  +EL  K   + + L     +G   +  G      R +++ EL +IA
Sbjct: 254 ------GDLKYEYPHELVPKGQTSTSWLRELTERGVRRRWPGGLTPATRAQVEKELALIA 307

Query: 350 RMKFSGYFLIVADFIQWA 367
             KF  YFL V D +++A
Sbjct: 308 EKKFDSYFLTVHDIVEFA 325


>gi|238810189|dbj|BAH69979.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 1467

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 138/670 (20%), Positives = 246/670 (36%), Gaps = 193/670 (28%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             +R++ ELN I    FS  + I    IQ +  N   VG  RGS   S  A    IT+++P
Sbjct: 871  EERIEAELNPIIDYGFSVIYWISHILIQKSTDNGFVVG-SRGSVGSSFVATLAGITEVNP 929

Query: 398  L--------------------------------RFSLL---------FERFLNPDRMSMP 416
            L                                + ++L         FE FL      +P
Sbjct: 930  LPPHYLCNKCKYFELSKDEKITSGYDLPNKNCPKCNILLEADGQGIPFETFLGFKADKVP 989

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D++F  D + ++         H  V +I  F +     A      AL+  Y  V    
Sbjct: 990  DIDLNFSGDIQGDI---------HNEVKRI--FDNTHTLKAGTISTVALKTSYGHV---- 1034

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                         +A  +++       ++P +D L   + K+E L R    H  GI+I  
Sbjct: 1035 -------------KAFTEEAM---RNYSEPFIDFL---AHKIEKLKRTTGQHPGGILI-- 1073

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKA--------GLIKFDFLGLKTLTLLQKSLDF 588
              + +   +Y     + P  + +  W+            ++K D LG    T+++     
Sbjct: 1074 --IPKEFDVYDFTPINYPANEPDSSWLTSHFDFHSIHDNILKLDLLGHDNPTIIR----- 1126

Query: 589  LAQRGVKVDLSLIPFDDHETYHLLT---------------TKGTLGIFQLESSGMRQALE 633
            L ++   +++  IP +D +   L                 T G LG+ +  +S +RQ L+
Sbjct: 1127 LLKKYTNINIDDIPKNDPKVLSLFASTKAMNIKPEQINNETTGALGLPEFGTSFVRQMLK 1186

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +P    ++I+L  L      +N+ +     N  +++VS          E   VI  ++
Sbjct: 1187 EAKPKSFANLISLAGLSHG---ENVWL-----NNAQELVSKKNF------EITDVICCRD 1232

Query: 694  QVMQI-----AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
             +MQ       + L  +++ E   +R+  G    +E+ + KE              +A  
Sbjct: 1233 DIMQFLLKKKVEPLFAFNIMEK--VRKGKGL-TDDEVKRLKEY------------KVADW 1277

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL-------------- 794
            + E + K   Y F K+HA AY ++++  AW K +YP+   A                   
Sbjct: 1278 MIESMKKIK-YMFPKAHATAYVLMAWWIAWFKLYYPLAHYACYFATHAKAVEIESMIDIK 1336

Query: 795  ----------EMDNVEKIKKFCQD--------------ARQF---NIQIMPPSVNTPCVD 827
                      +++N+ K ++  +D              AR F   NI +   + +   +D
Sbjct: 1337 GGHKVTDRLNQLNNIPKNERKVKDDDLIPVFEIAQELYARGFYIANIDLKKSAAHEWIID 1396

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL-- 885
             K G   +     +I G+G   A  ++EA   K F S ED   R     +N+ ++E +  
Sbjct: 1397 NKHG--CLIPPFKSIDGLGDAAAVSLVEARDAKDFTSKEDVIRRTS---VNKTLIEKMDK 1451

Query: 886  --VFAGALDC 893
              +F G  D 
Sbjct: 1452 LNIFKGLDDT 1461


>gi|71893884|ref|YP_279330.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae J]
 gi|71852011|gb|AAZ44619.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae J]
          Length = 1468

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 143/680 (21%), Positives = 254/680 (37%), Gaps = 172/680 (25%)

Query: 320  EVRLAQGAIAKGYHA------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            EV+L +    K Y        +    R+  EL  I    F   + I    +  AK     
Sbjct: 831  EVKLKEFVYKKAYEKYGRFLPKLIENRIKTELEPIINQGFHVVYWISKHIVTEAKSQGAI 890

Query: 374  VGPGRGSGAGSVTAYALTITDIDPL------------------RF--------------- 400
            V   RGS   S+ A+   ITD++PL                  +F               
Sbjct: 891  VD-SRGSVGSSIVAFLTGITDVNPLLPHYWCKKCSKVEFPKSQQFLSGYDLPDKNCLDCY 949

Query: 401  --------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
                    ++ FE FL  +   +PD D++F    + ++  +V+  +G   + +    G++
Sbjct: 950  KKMEKDGHNIPFETFLGFNVEKVPDIDLNFSGQTQLKMHDFVRTLFG---INKTFRAGTI 1006

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
               A     G A ++   +  RL      DP   ++ +     S F  A L     D L 
Sbjct: 1007 LTNAEKTVYGLARKLGEYRA-RL------DPKFDLNREV----SYFTSAFL-----DFL- 1049

Query: 513  EISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPM---YRDVRSDLPVTQFNMKWIEKAG 567
              + K +G+ R +  HA GI++   ++ +    P+     + +SD   T F+   +    
Sbjct: 1050 --ATKAQGVKRTSGKHAGGIIVIPQNQEIEDFTPINYPANNEKSDWKTTHFDYNALHD-N 1106

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT------------- 614
            L+K D LG    T+L   L       +K D   IP  D +   L  +             
Sbjct: 1107 LLKLDILGHDDPTIL---LHLEKLTNIKSDE--IPKSDPKILSLFRSCKELGISSDQILG 1161

Query: 615  --KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
               GT+GI +  +  +R+ L+  Q     DI+A+  L     +        + N ++ I+
Sbjct: 1162 EVTGTIGIPEFGTQFVRKMLQIAQVKSFADIVAICGLAHGTGV-------WQDNAEKLIL 1214

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE----EMDKQ 728
                +I+ ++     ++IY  Q     Q+   +++ E   +R+  G   +E    E+ K 
Sbjct: 1215 EKKHVINELISCRDDIMIYLLQKNIDHQV--AFNIMEN--VRKGKGLTDQEKELLELKKV 1270

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
               +I    K G                  Y F K+HA AYA+ +++ A+ K ++P+ F 
Sbjct: 1271 PSWYIESLQKIG------------------YLFPKAHAVAYAMKAWKIAYFKLYHPLAFY 1312

Query: 789  AASMTLEMD---------NVEKI--------KKFCQDARQFN---------IQIMPPSVN 822
            ++  ++  D          VEKI        KK  +  +            IQ +  S+ 
Sbjct: 1313 SSYFSIRPDVKDLETLIQPVEKIREKISILNKKRLESQKGIQQLSAKEKDLIQFLEISLE 1372

Query: 823  TPCVDFKV-----------------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
                 F++                  +N +     AI G+G   AR I++A   +PF S+
Sbjct: 1373 LKSRGFEIEKVSLEKSEAQEWIINKENNSLIPPFIAIDGIGDVNARKIVQARNLRPFSSI 1432

Query: 866  EDFCSRVDSKKLNRRVLESL 885
            EDF  R ++   + + L+ L
Sbjct: 1433 EDFEKRTETNSTSLKKLKEL 1452


>gi|5912303|emb|CAB56087.1| DNA polymerase III alpha subunit [Rickettsia prowazekii]
 gi|5912308|emb|CAB56091.1| DNA polymerase III alpha subunit [Rickettsia prowazekii]
          Length = 361

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 13/207 (6%)

Query: 832  DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            ++ I ++L AIKGV     + +  E  A   F S+ DF  R+  K +N ++LE+L+ AG 
Sbjct: 42   ESTIIFALGAIKGVTANFGKLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKAGC 101

Query: 891  LDCFGYSRMQLLQSLDNIQKYA-QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
             D    +R+QL  S+  +  Y+  + ++  +N+   I   +  + S  I +     + ++
Sbjct: 102  FDELHDNRLQLFLSIPKLIAYSTSYHQEQESNQFSLI---KVSSLSPTILVSSDYADKNT 158

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQK 1007
            + F  E   +G + S HPL  Y+ I  ++ I    +    +    N + LA ++   Q+K
Sbjct: 159  LAFY-EFEAMGLFLSNHPLTEYQGIFSRLNILNTRDLYNKLPNGTNRVTLAGVI---QKK 214

Query: 1008 KTRKGSRIGWVT--FSEPAKEYEANFF 1032
             +R  +R  +VT   S+P   +E   F
Sbjct: 215  DSRMSARGRFVTLVLSDPENIFELTIF 241


>gi|228477790|ref|ZP_04062418.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            salivarius SK126]
 gi|228250482|gb|EEK09696.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            salivarius SK126]
          Length = 1464

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 130/676 (19%), Positives = 257/676 (38%), Gaps = 163/676 (24%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVS------QKDRPRVTPDH 252
            ++++A   + P++AT N  +++ ED    ++++ A+    +++      +  +P   P+ 
Sbjct: 725  LIEVANRLDKPVLATGNVHYINPEDAIYREIIVRALGQGAMINRPIGKGENAKPAPLPEA 784

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            + +  +EM+  F+ L + L   + +    +   Q+          +E + ++K+      
Sbjct: 785  HFRTTNEMLDDFAFLGKDLAYEIVVTNTQAMANQI----------EEVEVVKKDLYTPFI 834

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            ++A    E ++A+   A+ +             R++ EL+ I    F+  +L     +  
Sbjct: 835  DRA----EEQVAEMTYARAFELYGNPLPDIIDLRIEKELSSILGNGFAVIYLASQMLVNR 890

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL----------------------- 403
            + +    VG  RGS   S  A  + IT+++P+    L                       
Sbjct: 891  SNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYLCPNCQHSEFITDGSYGSGFDLPD 949

Query: 404  ------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                              FE FL  D   +PD D++F  D +      V++ +G +   +
Sbjct: 950  KECSECGTEYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEQYAFR 1009

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  + A   V +  +  Y++  R                              D
Sbjct: 1010 AGTVGTVADRTAYGFV-KGYERDYNKFYR------------------------------D 1038

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV---------- 555
              VDRL   +    G+ R+   H  GIV+        +P Y DV    PV          
Sbjct: 1039 AEVDRL---AMGAAGVKRNTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTAA 1087

Query: 556  ---TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K  D        +D   I  DD +   L 
Sbjct: 1088 WQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG-----IDPKDIRADDPDVMKLF 1141

Query: 613  --------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
                          T  G LGI +  ++ +R  ++   P    +++ L  L       ++
Sbjct: 1142 SGTDILGVTPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHG---TDV 1198

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             + N +   KE I ++  +I         +++Y    +  A L    + +  + +R+ M 
Sbjct: 1199 WLGNAQDLIKEGIATLKTVIGC----RDDIMVY----LMHAGLDPKMAFTIMERVRKGMW 1250

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             KI EE   ++  +I    +N +         E   K   Y F K+HAAAY +++ + A+
Sbjct: 1251 LKISEE---ERNGYIQAMRENNVPDWY----IESCGKIK-YMFPKAHAAAYVMMALRVAY 1302

Query: 779  MKTHYPVEFLAASMTL 794
             K H+P+ +  A  ++
Sbjct: 1303 FKVHHPIYYYCAYFSI 1318


>gi|328944876|gb|EGG39036.1| DNA polymerase III PolC [Streptococcus sanguinis SK1087]
          Length = 1462

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 109/513 (21%), Positives = 193/513 (37%), Gaps = 116/513 (22%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 862  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 920

Query: 399  --------RFS--------------------------------LLFERFLNPDRMSMPDF 418
                    ++S                                + FE FL  D   +PD 
Sbjct: 921  PHYVCGKCQYSEFITDGSYGSGFDMPDKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDI 980

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 981  DLNFSGEDQPSAHLDVRDIFGAEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1035

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1036 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVV---- 1062

Query: 539  LSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
                +P Y DV    PV             T FN   I++  ++K D LG    T+++K 
Sbjct: 1063 ----IPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKL 1117

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D        +D + I  DD     L +    LG+ Q E  G    + G+       +  
Sbjct: 1118 QDLSG-----IDPNDISMDDAGVMALFSGTDILGVTQ-EQIGTPTGMLGIPEFGTNFVRG 1171

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---L 701
            +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M       L
Sbjct: 1172 MVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGL 1231

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                + +  + +R+ +  KI EE   ++  +I+   +N + +       E   K   Y F
Sbjct: 1232 DPKMAFTIMERVRKGLWLKISEE---ERNGYIAAMKENNVPEWY----IESCGKIK-YMF 1283

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1284 PKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSI 1316


>gi|54020575|ref|YP_116058.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae 232]
 gi|53987748|gb|AAV27949.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 232]
          Length = 1469

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 143/680 (21%), Positives = 254/680 (37%), Gaps = 172/680 (25%)

Query: 320  EVRLAQGAIAKGYHA------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            EV+L +    K Y        +    R+  EL  I    F   + I    +  AK     
Sbjct: 832  EVKLKEFVYKKAYEKYGRFLPKLIENRIKTELEPIINHGFHVVYWISKHIVTEAKSQGAI 891

Query: 374  VGPGRGSGAGSVTAYALTITDIDPL------------------RF--------------- 400
            V   RGS   S+ A+   ITD++PL                  +F               
Sbjct: 892  VD-SRGSVGSSIVAFLTGITDVNPLLPHYWCKKCSKVEFPKSQQFLSGYDLPDKNCLDCY 950

Query: 401  --------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
                    ++ FE FL  +   +PD D++F    + ++  +V+  +G   + +    G++
Sbjct: 951  KKMEKDGHNIPFETFLGFNVEKVPDIDLNFSGQTQLKMHDFVRTLFG---INKTFRAGTI 1007

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
               A     G A ++   +  RL      DP   ++ +     S F  A L     D L 
Sbjct: 1008 LTNAEKTVYGLARKLGEYRA-RL------DPKFDLNREV----SYFTSAFL-----DFL- 1050

Query: 513  EISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPM---YRDVRSDLPVTQFNMKWIEKAG 567
              + K +G+ R +  HA GI++   ++ +    P+     + +SD   T F+   +    
Sbjct: 1051 --ATKAQGVKRTSGKHAGGIIVIPQNQEIEDFTPINYPANNEKSDWKTTHFDYNALHD-N 1107

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT------------- 614
            L+K D LG    T+L   L       +K D   IP  D +   L  +             
Sbjct: 1108 LLKLDILGHDDPTIL---LHLEKLTNIKSDE--IPKSDPKILSLFRSCKELGISSDQILG 1162

Query: 615  --KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
               GT+GI +  +  +R+ L+  Q     DI+A+  L     +        + N ++ I+
Sbjct: 1163 EVTGTIGIPEFGTQFVRKMLQIAQVKSFADIVAICGLAHGTGV-------WQDNAEKLIL 1215

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE----EMDKQ 728
                +I+ ++     ++IY  Q     Q+   +++ E   +R+  G   +E    E+ K 
Sbjct: 1216 EKKHVINELISCRDDIMIYLLQKNIDHQV--AFNIMEN--VRKGKGLTDQEKELLELKKV 1271

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
               +I    K G                  Y F K+HA AYA+ +++ A+ K ++P+ F 
Sbjct: 1272 PSWYIESLQKIG------------------YLFPKAHAVAYAMKAWKIAYFKLYHPLAFY 1313

Query: 789  AASMTLEMD---------NVEKI--------KKFCQDARQFN---------IQIMPPSVN 822
            ++  ++  D          VEKI        KK  +  +            IQ +  S+ 
Sbjct: 1314 SSYFSIRPDVKDLETLIQPVEKIREKINILNKKRLESQKGIQQLSAKEKDLIQFLEISLE 1373

Query: 823  TPCVDFKV-----------------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
                 F++                  +N +     AI G+G   AR I++A   +PF S+
Sbjct: 1374 LKSRGFEIEKVSLEKSEAQEWIINKENNSLIPPFIAIDGIGDVNARKIVQARNLRPFSSI 1433

Query: 866  EDFCSRVDSKKLNRRVLESL 885
            EDF  R ++   + + L+ L
Sbjct: 1434 EDFEKRTETNSTSLKKLKEL 1453


>gi|5912313|emb|CAB56110.1| DNA polymerase III alpha subunit [Rickettsia typhi]
          Length = 359

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 13/207 (6%)

Query: 832  DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            ++ I ++L AIKGV     + +  E  A   F S+ DF  R+  K +N ++LE+L+ AG 
Sbjct: 40   ESTIIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKAGC 99

Query: 891  LDCFGYSRMQLLQSLDNIQKYA-QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
             D    +R+QL  S+  +  Y+  + ++  +N+   I   +  + S  I +     + ++
Sbjct: 100  FDELHDNRLQLFLSVPKLIAYSTSYHQEQESNQFSLI---KVSSLSPTILVSSNYADKNT 156

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQK 1007
            + F  E   +G + S HPL  Y+ I  ++ I    +    +    N + LA ++   Q+K
Sbjct: 157  LAFY-EFESMGLFISNHPLTEYQEIFSRLNILNTRDLYNKLPNGTNQVTLAGVI---QKK 212

Query: 1008 KTRKGSRIGWVT--FSEPAKEYEANFF 1032
             +R  +R  +VT   S+P   +E   F
Sbjct: 213  DSRMSARGRFVTLVLSDPENIFELTIF 239


>gi|329117787|ref|ZP_08246504.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            parauberis NCFD 2020]
 gi|326908192|gb|EGE55106.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            parauberis NCFD 2020]
          Length = 1465

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 94/418 (22%), Positives = 160/418 (38%), Gaps = 94/418 (22%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K A   V +
Sbjct: 969  FETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGAEYAFRAGTVGTVADKTAYGFV-K 1027

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +  + +  R                              D  VDRL   ++   G+ R
Sbjct: 1028 GYERDFGKFYR------------------------------DAEVDRL---AKGAAGVKR 1054

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 1055 TTGQHPGGIVV--------IPNYMDVYDFTPVQFPAEDVSASWQTTHFNFHDIDE-NVLK 1105

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKG 616
             D LG    T+++K  D        +D   I  DD     L               T  G
Sbjct: 1106 LDILGHDDPTMIKKLEDLSG-----IDAKTIQADDPGVMALFSGTEILGVTPEQIGTPTG 1160

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
             LGI +  +S +R  +   +P    +++ L  L       ++ + N +   KE I ++  
Sbjct: 1161 MLGIPEFGTSFVRGMVNETRPTTFAELLQLSGLSHG---TDVWLGNAQDLIKEGIATLKT 1217

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I         +++Y    +  A L    + +  + +R+ M  KI EE   ++  +I   
Sbjct: 1218 VIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRKGMWLKISEE---ERNSYIQAM 1266

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             KN +         E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1267 RKNNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHHPLMYYCAYFSI 1319


>gi|15675759|ref|NP_269933.1| DNA polymerase III PolC [Streptococcus pyogenes M1 GAS]
 gi|81175278|sp|P0C0B8|DPO3_STRP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|13622981|gb|AAK34654.1| DNA polymerase III (alpha subunit) [Streptococcus pyogenes M1 GAS]
          Length = 1465

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 159/418 (38%), Gaps = 94/418 (22%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K A   V +
Sbjct: 969  FETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-K 1027

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +  Y +  R                              D  VDRL   +    G+ R
Sbjct: 1028 GYERDYGKFYR------------------------------DAEVDRL---AAGAAGVKR 1054

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 1055 TTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLK 1105

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKG 616
             D LG    T+++K  D        +D   IP DD     L               T  G
Sbjct: 1106 LDILGHDDPTMIRKLQDLSG-----IDPITIPADDPGVMALFSGTEVLGVTPEQIGTPTG 1160

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
             LGI +  ++ +R  +    P    +++ L  L       ++ + N +   KE I ++  
Sbjct: 1161 MLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHG---TDVWLGNAQDLIKEGIATLKT 1217

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I         +++Y    +  A L    + +  + +R+ +  KI EE   ++  +I   
Sbjct: 1218 VIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIDAM 1266

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             +N +         E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1267 RENNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHHPIMYYCAYFSI 1319


>gi|71911485|ref|YP_283035.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS5005]
 gi|71854267|gb|AAZ52290.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS5005]
          Length = 1465

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 159/418 (38%), Gaps = 94/418 (22%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K A   V +
Sbjct: 969  FETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-K 1027

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +  Y +  R                              D  VDRL   +    G+ R
Sbjct: 1028 GYERDYGKFYR------------------------------DAEVDRL---AAGAAGVKR 1054

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 1055 TTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLK 1105

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKG 616
             D LG    T+++K  D        +D   IP DD     L               T  G
Sbjct: 1106 LDILGHDDPTMIRKLQDLSG-----IDPITIPADDPGVMALFSGTEVLGVTPEQIGTPTG 1160

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
             LGI +  ++ +R  +    P    +++ L  L       ++ + N +   KE I ++  
Sbjct: 1161 MLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHG---TDVWLGNAQDLIKEGIATLKT 1217

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I         +++Y    +  A L    + +  + +R+ +  KI EE   ++  +I   
Sbjct: 1218 VIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIDAM 1266

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             +N +         E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1267 RENNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHHPIMYYCAYFSI 1319


>gi|294660232|ref|NP_852876.2| DNA polymerase III subunit alpha polC/Gram positive-type [Mycoplasma
            gallisepticum str. R(low)]
 gi|284811887|gb|AAP56444.2| DNA polymerase III alpha subunit polC/Gram positive-type [Mycoplasma
            gallisepticum str. R(low)]
 gi|284930337|gb|ADC30276.1| DNA polymerase III alpha subunit polC/Gram positive-type [Mycoplasma
            gallisepticum str. R(high)]
          Length = 1494

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 127/664 (19%), Positives = 237/664 (35%), Gaps = 190/664 (28%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            + R+++ELN I +  +   + +    ++ +  +   VG  RGS   S+ A    I++++P
Sbjct: 889  KSRIEYELNAIIKNGYGIIYWLAHLLVKKSNDDGYLVG-SRGSVGSSIVALLAGISEVNP 947

Query: 398  LR-----------------------------------------FSLLFERFLNPDRMSMP 416
            L+                                          ++ F  F+       P
Sbjct: 948  LQPYYYCKKCKKTKFVDNVDDGHDLVNKPCELLDCDGEMRGEGHNIPFASFMGFKGEKTP 1007

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D++F    + +   YV+  +G     +  T  ++Q K A +     L++   + +   
Sbjct: 1008 DIDLNFSSFYQAKAHDYVRELFGESHTTRCGTISTMQDKTAYKIAKDYLEITIGEEE--- 1064

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI-- 534
                                     RLA      + EI        R    H  GI++  
Sbjct: 1065 -----------------------SERLAGWYASEMSEIK-------RTTGQHPGGILVFP 1094

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
             D+ +    P+      + P    + KW  K    KF++L     TLL+  LD L+Q   
Sbjct: 1095 KDKEIEDFCPV------NYPADDKSSKW--KTSHFKFEYLHD---TLLK--LDILSQEDP 1141

Query: 594  ---------VKVDLSLIPFDDHETYHLLT----------------TKGTLGIFQLESSGM 628
                       V    IP +D +   L                  + G LGI +  +   
Sbjct: 1142 TILKYLYEITNVKPEEIPNNDPKVLSLFNLDHCLENVNNNPILKDSTGALGIPEFGTKIT 1201

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            R+ L+  +P  + D+I +  L          V+ N  N  + IV  H  ++ ++     +
Sbjct: 1202 REILKIAKPASVADLIRVSGLSHGTD-----VWTN--NAADLIVDKHYKLNEVIACRDDI 1254

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            + Y   +    Q+   +++ E DV +   GKK+K E +K  + F    S++ I     + 
Sbjct: 1255 MTYLSSLGIENQI--AFNIME-DVRK---GKKLKPEYEKIMQEF--NVSQDYIDSCNKIK 1306

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL-------------- 794
                      Y F K+HA AY +++++ AW K HYP  F AA  +               
Sbjct: 1307 ----------YMFPKAHATAYVLMAWKIAWFKVHYPEAFYAAIFSFKVKEHDIETCINGG 1356

Query: 795  ---------EMDNVEKIKKFCQDARQF----------------------NIQIMPPSV-N 822
                     E+ ++    KF ++  +                       NI++   S+ +
Sbjct: 1357 IRAITKRYNEIKSLINKTKFAKNKSELTLNKKDEDLMPTYELYLEMLERNIKLEQVSLEH 1416

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
            +  + F V +N+IY     I G+G   A+ I++   ++ F S  D  ++    KLN+ + 
Sbjct: 1417 SDALHFVVKNNKIYPPFNTINGLGDEIAKLIVKKRNEEGFKSQADLKTKC---KLNKNIW 1473

Query: 883  ESLV 886
               +
Sbjct: 1474 NYFI 1477


>gi|76363558|sp|P0C0B7|DPO3_STRPY RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|9789541|gb|AAF98345.1| DNA polymerase III alpha chain [Streptococcus pyogenes]
          Length = 1465

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 159/418 (38%), Gaps = 94/418 (22%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K A   V +
Sbjct: 969  FETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-K 1027

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +  Y +  R                              D  VDRL   +    G+ R
Sbjct: 1028 GYERDYGKFYR------------------------------DAEVDRL---AAGAAGVKR 1054

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 1055 TTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLK 1105

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKG 616
             D LG    T+++K  D        +D   IP DD     L               T  G
Sbjct: 1106 LDILGHDDPTMIRKLQDLSG-----IDPITIPADDPGVMALFSGTEVLGVTPEQIGTPTG 1160

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
             LGI +  ++ +R  +    P    +++ L  L       ++ + N +   KE I ++  
Sbjct: 1161 MLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHG---TDVWLGNAQDLIKEGIATLKT 1217

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I         +++Y    +  A L    + +  + +R+ +  KI EE   ++  +I   
Sbjct: 1218 VIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIDAM 1266

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             +N +         E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1267 RENNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHHPIMYYCAYFSI 1319


>gi|284931104|gb|ADC31042.1| DNA polymerase III alpha subunit polC/Gram positive-type [Mycoplasma
            gallisepticum str. F]
          Length = 1494

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 130/664 (19%), Positives = 241/664 (36%), Gaps = 190/664 (28%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            + R+++ELN I +  +   + +    ++ +  +   VG  RGS   S+ A    I++++P
Sbjct: 889  KSRIEYELNAIIKNGYGIIYWLAHLLVKKSNDDGYLVG-SRGSVGSSIVALLAGISEVNP 947

Query: 398  LR-----------------------------------------FSLLFERFLNPDRMSMP 416
            L+                                          ++ F  F+       P
Sbjct: 948  LQPYYYCKKCKKTKFVDNVDDGHDLVNKPCEFLDCDGEMRGEGHNIPFASFMGFKGEKTP 1007

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D++F    + +   YV+  +G     +  T  ++Q K A +     L++   + +   
Sbjct: 1008 DIDLNFSSFYQAKAHDYVRELFGESHTTRCGTISTMQDKTAYKIAKDYLEITIGEEE--- 1064

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI-- 534
                                     RLA      + EI        R    H  GI++  
Sbjct: 1065 -----------------------SERLAGWYASEMSEIK-------RTTGQHPGGILVFP 1094

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
             D+ +    P+      + P    + KW  K    KF++L     TLL+  LD L+Q   
Sbjct: 1095 KDKEIEDFCPV------NYPADDKSSKW--KTSHFKFEYLHD---TLLK--LDILSQEDP 1141

Query: 594  ---------VKVDLSLIPFDDHETYHLLT----------------TKGTLGIFQLESSGM 628
                       V    IP +D +   L                  + G LGI +  +   
Sbjct: 1142 TILKYLYEITNVKPEEIPNNDPKVLSLFNLDHCLENVNNNPILKDSTGALGIPEFGTKIT 1201

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            R+ L+  +P  + D+I +  L          V+ N  N  + IV  H  ++ ++     +
Sbjct: 1202 REILKIAKPASVADLIRVSGLSHGTD-----VWTN--NAADLIVDKHYKLNEVIACRDDI 1254

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            + Y   +    Q+   +++ E DV +   GKK+K E +K  + F    S++ I     + 
Sbjct: 1255 MTYLSSLGIENQI--AFNIME-DVRK---GKKLKPEYEKIMQEF--NVSQDYIDSCNKIK 1306

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA--SMTLEMDNVE------ 800
                      Y F K+HA AY +++++ AW K HYP  F AA  S  ++  ++E      
Sbjct: 1307 ----------YMFPKAHATAYVLMAWKIAWFKVHYPEAFYAAIFSFKVKEHDIETCINGG 1356

Query: 801  ---------KIK------KFCQDARQF----------------------NIQIMPPSV-N 822
                     +IK      KF ++  +                       NI++   S+ +
Sbjct: 1357 IRAITKRYNEIKSLINKTKFAKNKSELTLNKKDEDLMPTYELYLEMLERNIKLEQVSLEH 1416

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
            +  + F V +N+IY     I G+G   A+ I++   ++ F S  D  ++    KLN+ + 
Sbjct: 1417 SDALHFVVKNNKIYPPFNTINGLGDEIAKLIVKKRNEEGFKSQADLKTKC---KLNKNIW 1473

Query: 883  ESLV 886
               +
Sbjct: 1474 NYFI 1477


>gi|94995162|ref|YP_603260.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10750]
 gi|123382133|sp|Q1J4M0|DPO3_STRPF RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94548670|gb|ABF38716.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10750]
          Length = 1465

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 159/418 (38%), Gaps = 94/418 (22%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K A   V +
Sbjct: 969  FETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGAEYAFRAGTVGTVAEKTAYGFV-K 1027

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +  Y +  R                              D  VDRL   +    G+ R
Sbjct: 1028 GYERDYGKFYR------------------------------DAEVDRL---AAGAAGVKR 1054

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 1055 TTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLK 1105

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKG 616
             D LG    T+++K  D        +D   IP DD     L               T  G
Sbjct: 1106 LDILGHDDPTMIRKLQDLSG-----IDPITIPADDPGVMALFSGTEVLGVTPEQIGTPTG 1160

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
             LGI +  ++ +R  +    P    +++ L  L       ++ + N +   KE I ++  
Sbjct: 1161 MLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHG---TDVWLGNAQDLIKEGIATLKT 1217

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I         +++Y    +  A L    + +  + +R+ +  KI EE   ++  +I   
Sbjct: 1218 VIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIDAM 1266

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             +N +         E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1267 RENNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHHPIMYYCAYFSI 1319


>gi|94991249|ref|YP_599349.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10270]
 gi|166217452|sp|Q1JEV4|DPO3_STRPD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94544757|gb|ABF34805.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10270]
          Length = 1465

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 159/418 (38%), Gaps = 94/418 (22%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K A   V +
Sbjct: 969  FETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-K 1027

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +  Y +  R                              D  VDRL   +    G+ R
Sbjct: 1028 GYERDYGKFYR------------------------------DAEVDRL---AAGAAGVKR 1054

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 1055 TTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLK 1105

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKG 616
             D LG    T+++K  D        +D   IP DD     L               T  G
Sbjct: 1106 LDILGHDDPTMIRKLQDLSG-----IDPITIPADDPGVMALFSGTEVLGVTPEQIGTPTG 1160

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
             LGI +  ++ +R  +    P    +++ L  L       ++ + N +   KE I ++  
Sbjct: 1161 MLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHG---TDVWLGNAQDLIKEGIATLKT 1217

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I         +++Y    +  A L    + +  + +R+ +  KI EE   ++  +I   
Sbjct: 1218 VIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIDAM 1266

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             +N +         E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1267 RENNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHHPIMYYCAYFSI 1319


>gi|94989303|ref|YP_597404.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS9429]
 gi|94993192|ref|YP_601291.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS2096]
 gi|123257711|sp|Q1J9R4|DPO3_STRPB RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|123382486|sp|Q1JJW3|DPO3_STRPC RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94542811|gb|ABF32860.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS9429]
 gi|94546700|gb|ABF36747.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS2096]
          Length = 1465

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 159/418 (38%), Gaps = 94/418 (22%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K A   V +
Sbjct: 969  FETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-K 1027

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +  Y +  R                              D  VDRL   +    G+ R
Sbjct: 1028 GYERDYGKFYR------------------------------DAEVDRL---AAGAAGVKR 1054

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 1055 TTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLK 1105

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKG 616
             D LG    T+++K  D        +D   IP DD     L               T  G
Sbjct: 1106 LDILGHDDPTMIRKLQDLSG-----IDPITIPADDPGVMALFSGTEILGVTPEQIGTPTG 1160

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
             LGI +  ++ +R  +    P    +++ L  L       ++ + N +   KE I ++  
Sbjct: 1161 MLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHG---TDVWLGNAQDLIKEGIATLKT 1217

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I         +++Y    +  A L    + +  + +R+ +  KI EE   ++  +I   
Sbjct: 1218 VIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIDAM 1266

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             +N +         E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1267 RENNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHHPIMYYCAYFSI 1319


>gi|326407708|gb|ADZ64779.1| DNA polymerase III subunit alpha, Gram-positive type [Lactococcus
            lactis subsp. lactis CV56]
          Length = 1638

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 158/787 (20%), Positives = 298/787 (37%), Gaps = 173/787 (21%)

Query: 99   IVLLVSTAEGYQRLIELVS----RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
            + L   T EG + L ++VS    + Y         R+  S L E   EGL++   GS+  
Sbjct: 790  VTLYAKTQEGLKNLFKIVSFGNVKYY-----AGLPRVPRSVL-EANREGLLV---GSACE 840

Query: 155  IDRAF-------FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-----SQVVQ 202
            I   F       F  + ++A  +   F ++F   LY +L     +   +E       +++
Sbjct: 841  IGEVFDAAINKTFEETLEIA--KFYDFIEVFPPALYRSLVVGGSFKSEKELEQTLKDLIK 898

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLM-------AVAHSTVVSQKDRPRVTPDHYLK 255
            +  T   P++AT N  +L+ ED    ++++        +  +    +  +P   P+ + +
Sbjct: 899  IGKTLGKPVLATGNLHYLNPEDAIYREIIVRSLGLGAEINWTQGHGEHAKPLPLPEAHFR 958

Query: 256  NRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPIL-PRFIEKECDDIQKEEE 308
               EM+  FS L E       ++NT ++A     +  V   +  P+ +    D  +  EE
Sbjct: 959  TTDEMLEAFSFLDEKTAREIVIDNTQKLADEFDVLTPVRDDLYTPKMV---FDGGETSEE 1015

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDY-RQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              +R        +   +     G    D    RL+ EL  I    FS  ++I  + ++ +
Sbjct: 1016 RIVR--------LTYEKAHEWYGNPLPDIIDARLEKELRSILGNGFSVVYIISQELVKRS 1067

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
                  VG  RGS   S+ A  + IT+++PL                             
Sbjct: 1068 NDRGYIVG-SRGSVGSSLVATMIGITEVNPLAPHYRCPECQYFECYDDGSFGSGYDMPDK 1126

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D +      V++ +G +   + 
Sbjct: 1127 NCPKCDHKLIKDGHDIPFETFLGFKGDKVPDIDLNFSGDDQPLAHLDVRDIFGEDYAFRA 1186

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V +  +  Y Q                                 + 
Sbjct: 1187 GTIGTVAEKTAFGFV-KGYERDYDQF------------------------------YGNA 1215

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----------- 555
             +DRL   S    G+ R    H  GI++        +P Y DV    PV           
Sbjct: 1216 EIDRLAAGST---GVKRTTGQHPGGIIV--------IPNYMDVYDFSPVQFPADDVNAEW 1264

Query: 556  --TQFNMKWIEKAGLIKFDFLGLKTLTLLQK--SLDFLAQRGVKVDLSLIPFDDHETYHL 611
              T F+   I    ++K D LG    T+++K  SL  +  +        IP DD     L
Sbjct: 1265 QTTHFDFHAIHD-NILKLDILGHDDPTMIRKLQSLSGIVPQD-------IPMDDPGVMKL 1316

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
             T   +LG+ + E  G++    G+        + +++  +P    +++  +   +G +  
Sbjct: 1317 FTGTESLGLTE-EQLGVKLGTLGIPEMGTFTSMNMIAEAKPKNFADLLQISGLSHGTDVW 1375

Query: 672  V-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
              +   LI   + +   VI  ++ +M       L +G + +  + +R+ M  KI  E   
Sbjct: 1376 SGNAQDLIRSGIADLSSVIGCRDDIMVYLIHKGLENGLAFTIMERVRKGMWNKIPAE--- 1432

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++E+++    ++ + +       E  +K   Y F K+HAAAY +++ + A+ K H+P+ +
Sbjct: 1433 EREKYVEAMREHDVPEWY----IESCSKIK-YMFPKAHAAAYIMMALRVAYFKVHHPILY 1487

Query: 788  LAASMTL 794
              A  ++
Sbjct: 1488 YCAWFSI 1494


>gi|71904322|ref|YP_281125.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS6180]
 gi|123747742|sp|Q48R90|DPO3_STRPM RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|71803417|gb|AAX72770.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS6180]
          Length = 1465

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 159/418 (38%), Gaps = 94/418 (22%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K A   V +
Sbjct: 969  FETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-K 1027

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +  Y +  R                              D  VDRL   +    G+ R
Sbjct: 1028 GYERDYGKFYR------------------------------DAEVDRL---AAGAAGVKR 1054

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 1055 TTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLK 1105

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKG 616
             D LG    T+++K  D        +D   IP DD     L               T  G
Sbjct: 1106 LDILGHDDPTMIRKLQDLSG-----IDPITIPADDPGVMALFSGTEILGVTPEQIGTPTG 1160

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
             LGI +  ++ +R  +    P    +++ L  L       ++ + N +   KE I ++  
Sbjct: 1161 MLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHG---TDVWLGNAQDLIKEGIATLKT 1217

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I         +++Y    +  A L    + +  + +R+ +  KI EE   ++  +I   
Sbjct: 1218 VIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIDAM 1266

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             +N +         E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1267 RENNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHHPIMYYCAYFSI 1319


>gi|56808719|ref|ZP_00366439.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
            [Streptococcus pyogenes M49 591]
 gi|209560099|ref|YP_002286571.1| DNA polymerase III PolC [Streptococcus pyogenes NZ131]
 gi|209541300|gb|ACI61876.1| DNA polymerase III alpha subunit [Streptococcus pyogenes NZ131]
          Length = 1465

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 159/418 (38%), Gaps = 94/418 (22%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K A   V +
Sbjct: 969  FETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-K 1027

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +  Y +  R                              D  VDRL   +    G+ R
Sbjct: 1028 GYERDYGKFYR------------------------------DAEVDRL---AAGAAGVKR 1054

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 1055 TTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLK 1105

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKG 616
             D LG    T+++K  D        +D   IP DD     L               T  G
Sbjct: 1106 LDILGHDDPTMIRKLQDLSG-----IDPITIPADDPGVMALFSGTEILGVTPEQIGTPTG 1160

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
             LGI +  ++ +R  +    P    +++ L  L       ++ + N +   KE I ++  
Sbjct: 1161 MLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHG---TDVWLGNAQDLIKEGIATLKT 1217

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I         +++Y    +  A L    + +  + +R+ +  KI EE   ++  +I   
Sbjct: 1218 VIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIDAM 1266

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             +N +         E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1267 RENNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHHPIMYYCAYFSI 1319


>gi|19746871|ref|NP_608007.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS8232]
 gi|24418360|sp|Q8NZB5|DPO3_STRP8 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|19749113|gb|AAL98506.1| DNA polymerase III alpha chain [Streptococcus pyogenes MGAS8232]
          Length = 1465

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 159/418 (38%), Gaps = 94/418 (22%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K A   V +
Sbjct: 969  FETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-K 1027

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +  Y +  R                              D  VDRL   +    G+ R
Sbjct: 1028 GYERDYGKFYR------------------------------DAEVDRL---AAGAAGVKR 1054

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 1055 TTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLK 1105

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKG 616
             D LG    T+++K  D        +D   IP DD     L               T  G
Sbjct: 1106 LDILGHDDPTMIRKLQDLSG-----IDPITIPADDPGVMALFSGTEILGVTPEQIGTPTG 1160

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
             LGI +  ++ +R  +    P    +++ L  L       ++ + N +   KE I ++  
Sbjct: 1161 MLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHG---TDVWLGNAQDLIKEGIATLKT 1217

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I         +++Y    +  A L    + +  + +R+ +  KI EE   ++  +I   
Sbjct: 1218 VIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIDAM 1266

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             +N +         E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1267 RENNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHHPIMYYCAYFSI 1319


>gi|125625168|ref|YP_001033651.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493976|emb|CAL98973.1| DNA polymerase III alpha subunit [Lactococcus lactis subsp. cremoris
            MG1363]
 gi|300071977|gb|ADJ61377.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 1635

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 157/785 (20%), Positives = 301/785 (38%), Gaps = 169/785 (21%)

Query: 99   IVLLVSTAEGYQRLIELVS----RMYL-LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG 153
            + L   T EG + L ++VS    + Y  L +  +SV        E  +EGL++ +    G
Sbjct: 787  VTLYAKTQEGLKNLFKIVSFGNVKYYAGLPRLPRSVL-------EANSEGLLVGSACEVG 839

Query: 154  PI-DRAF---FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-----SQVVQLA 204
             + D A    F  + ++A  +   F ++F   LY +L     +   +E       ++++ 
Sbjct: 840  EVFDAAINKTFEETLEIA--KFYDFIEVFPPALYRSLVVGGSFKSEKELEQTLKDLIKIG 897

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLM-------AVAHSTVVSQKDRPRVTPDHYLKNR 257
             T   P++AT N  +L+ ED    ++++        +  +    +  +P   P+ + +  
Sbjct: 898  KTLGKPVLATGNLHYLNPEDAIYREIIVRSLGLGAEINWTQGHGEHAKPLPLPEAHFRTT 957

Query: 258  SEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPIL-PRFIEKECDDIQKEEENE 310
             EM+  FS L E       ++NT ++A     +  V   +  P+ +    D  +  EE  
Sbjct: 958  DEMLEAFSFLDEKTAREIVIDNTQKMADEFDVLTPVRDDLYTPKMV---FDGGETSEERI 1014

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDY-RQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            +R        +   +     G    D    RL+ EL  I    FS  ++I  + ++ + +
Sbjct: 1015 VR--------LTYEKAHEWYGNPLPDIIDARLEKELRSILGNGFSVVYIISQELVKRSNE 1066

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------ 399
                VG  RGS   S+ A  + IT+++PL                               
Sbjct: 1067 RGYIVG-SRGSVGSSLVATMIGITEVNPLAPHYRCPECQYFECYDDGSFGSGYDMPDKNC 1125

Query: 400  -----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
                         + FE FL      +PD D++F  D +      V++ +G +   +  T
Sbjct: 1126 PKCDHKLIKDGHDIPFETFLGFKGDKVPDIDLNFSGDDQPLAHLDVRDIFGEDYAFRAGT 1185

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
             G++  K A   V +  +  Y Q                                 +  +
Sbjct: 1186 IGTVAEKTAFGFV-KGYERDYDQF------------------------------YGNAEI 1214

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV------------- 555
            DRL   S    G+ R    H  GI++        +P Y DV    PV             
Sbjct: 1215 DRLAAGST---GVKRTTGQHPGGIIV--------IPNYMDVYDFSPVQFPADDVNAEWQT 1263

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQK--SLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
            T F+   I    ++K D LG    T+++K  SL  +  +        IP DD     L T
Sbjct: 1264 THFDFHAIHD-NILKLDILGHDDPTMIRKLQSLSGIVPQD-------IPMDDPGVMKLFT 1315

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV- 672
               +LG+ + E  G++    G+        + +++  +P    +++  +   +G +    
Sbjct: 1316 GTESLGLTE-EQLGVKLGTLGIPEMGTFTSMNMIAEAKPKNFADLLQISGLSHGTDVWSG 1374

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +   LI   + +   VI  ++ +M       L +G + +  + +R+ M  KI  E   ++
Sbjct: 1375 NAQDLIRSGIADLSSVIGCRDDIMVYLIHKGLENGLAFTIMERVRKGMWNKIPAE---ER 1431

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E+++    ++ + +       E  +K   Y F K+HAAAY +++ + A+ K H+P+ +  
Sbjct: 1432 EKYVEAMREHEVPEWY----IESCSKIK-YMFPKAHAAAYIMMALRVAYFKVHHPIFYYC 1486

Query: 790  ASMTL 794
            A  ++
Sbjct: 1487 AWFSI 1491


>gi|227892603|ref|ZP_04010408.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
 gi|227865588|gb|EEJ73009.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
          Length = 1435

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 106/504 (21%), Positives = 198/504 (39%), Gaps = 97/504 (19%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKN 256
            S + +L    + P+VAT ++ ++     E HD +   +  S   S  +R +  PD +  +
Sbjct: 715  SNIYKLGKELKKPVVATGDAHYV-----EPHDAIYRTILISAQRSNPNRNKPQPDLHFYS 769

Query: 257  RSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK---EE 307
              EM++ FS L E       ++N+ +IA   S I  +   + P  I    ++++K   ++
Sbjct: 770  TQEMLNAFSFLGEDVAKEIVIDNSNKIADEISEIQPIKDGLYPPHIAHADEELKKLTYDK 829

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL    +  +                  + R+D ELN I    ++  +LI    +  +
Sbjct: 830  AYELYGNPLPKI-----------------VKDRIDLELNSIISNVYAVIYLISQRLVAKS 872

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDF 418
             K+   VG  RGS   S+ A    IT+++PL         ++S  FE         +PD 
Sbjct: 873  NKDGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPKCKYSQFFENGEYGSGFDLPDK 931

Query: 419  DIDFC-----QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            +   C     +D +D         +G ++V  I    S   +    +  R +        
Sbjct: 932  NCPKCGTPLVKDGQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM-------- 982

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRF---------REARLADPSVDRLLEISQKLEGLYRH 524
                  P++     ++  +AD + +         R+ +L +  +DRL   +  + G+ R 
Sbjct: 983  ----FGPDNSYRAGTIATVADKTAYGYAKHFDEERDLKLRNAELDRL---ASGIRGVKRT 1035

Query: 525  ASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H AGIV+   D  +    P+     DV +   +T ++   I    ++KFD LG    
Sbjct: 1036 TGQHPAGIVVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDP 1094

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLES 625
            T+++   D        +D   IP DD     L ++               GTLG+ +  +
Sbjct: 1095 TMIRHLQDLSG-----IDPLTIPPDDPGVMSLFSSTKALGVTPEQIGSQTGTLGVPEFGT 1149

Query: 626  SGMRQALEGMQPDCIEDIIALVSL 649
              +R  LE  +P    +++ +  L
Sbjct: 1150 RFVRGMLEETKPTTFSELLQISGL 1173


>gi|226323840|ref|ZP_03799358.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758]
 gi|225207389|gb|EEG89743.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758]
          Length = 1535

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 160/781 (20%), Positives = 286/781 (36%), Gaps = 164/781 (20%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +++L     G   L +LVS  +L+   ++  RI  S L E   EGLI+ +   +G + RA
Sbjct: 681  VIILARNDIGRVNLYQLVSASHLVYYNRRP-RIPKSVLNE-HREGLIVGSACEAGELYRA 738

Query: 159  FFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE-----SQVVQLAYTH 207
                       +++ F      + L  +   V   +    +   +      ++V L    
Sbjct: 739  LLDGKPDETIAKIVDFYDYLEIQPLGNNAFMVESDKVTSVNSMEDIMDLNQKIVHLGEQF 798

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
              P+V T +  F+  ED     ++MA       + K  P      YL+   EM+  F+ L
Sbjct: 799  HKPVVGTCDVHFMDPEDEVYRRIIMA-GKGFGDADKQAPL-----YLRTTEEMLDEFAYL 852

Query: 268  --PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR----NKAVAGLEV 321
               +A E  +      + +++  +P+ P     +C  + +  +  LR    NKA +    
Sbjct: 853  GSEKAYEVVIRNTNLIADMIEKISPVRP----DKCPPVIENSDQMLRDICYNKAHS---- 904

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
             +    + +  H     +RL+ ELN I    F+  ++I    +  + ++   VG  RGS 
Sbjct: 905  -MYGDPLPEIVH-----ERLERELNSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSV 957

Query: 382  AGSVTAYALTITDIDPL------------------------------------------- 398
              S  A    IT+++PL                                           
Sbjct: 958  GSSFVATMAGITEVNPLVPHYYCSNCHYSDFDSEEVKKYVGGCGHDMPDKNCPVCGQKLV 1017

Query: 399  --RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
               F + FE FL       PD D++F  D + +  +Y +  +G  +  +  T  +L  K 
Sbjct: 1018 KDGFDIPFETFLGFKGNKEPDIDLNFSGDYQSKAHKYTEVIFGKGQTFRAGTIAALAEKT 1077

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A   V    +                                R  R  +  +DR++    
Sbjct: 1078 AYGYVKNYYEE-------------------------------RGDRKRNCEIDRIV---A 1103

Query: 517  KLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKF 571
               G+ R    H  GIV+      ++   P+     D+ +D+  T F+   I+   L+K 
Sbjct: 1104 GCTGIRRSTGQHPGGIVVLPHGEDINSFTPIQHPANDMTTDIITTHFDYHSIDH-NLLKL 1162

Query: 572  DFLG------LKTLTLLQKSLDFLAQRGVKVD----LSLIPFDDHETYHLLTTKGTLGIF 621
            D LG      +KTL  L  S D +  +   V+     + IP DD     L      LGI 
Sbjct: 1163 DILGHDDPTMIKTLEELINS-DAMDNKYDGVNNVFKATDIPLDDPGVMGLFAGTEVLGIT 1221

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
              +  G      G+     + +I +V   +P  + +++  +   +G           D  
Sbjct: 1222 PEDIDGCPLGCLGVPEFGTDFVIQMVIDTKPKTLSDLIRISGLSHG----------TDVW 1271

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNG 740
            L   Q +I  +E    I+  +     +  D++   + K ++ EE     ER   G    G
Sbjct: 1272 LNNAQTLI--EEGKATISTAIC----TRDDIMTYLINKGVESEESFTIMERVRKGTVAKG 1325

Query: 741  ISKTIAVNIFELL-----------AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              K  +    ++L            +   Y F K+HAAAY +++Y+ A+ K +YP+ + A
Sbjct: 1326 KCKEWSQFKKDMLEHDVPEWYIWSCERIKYMFPKAHAAAYVMMAYRIAYCKINYPLAYYA 1385

Query: 790  A 790
            A
Sbjct: 1386 A 1386


>gi|196234155|ref|ZP_03132988.1| DNA-directed DNA polymerase [Chthoniobacter flavus Ellin428]
 gi|196221806|gb|EDY16343.1| DNA-directed DNA polymerase [Chthoniobacter flavus Ellin428]
          Length = 340

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 12/174 (6%)

Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
           + G S  +   + + +  FA YGF +SHA ++A+++Y +AW K H   EF A+ +  +  
Sbjct: 14  EKGHSDEVTELVVKSVQSFAVYGFPESHAISFALLAYASAWYKVHRAPEFYASLLNNQPM 73

Query: 798 NVEKIKKFCQDARQFNIQIMPPSV-----NTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
                    +DA++  +  +P SV     N   +D    D+ +   L  + G+    A H
Sbjct: 74  GFYSSATLIKDAQRRGLHFLPVSVCESEWNCTVID----DSTVRLGLCVVNGLRQEHAAH 129

Query: 853 IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
           ++     +PF S+ DF  R    K  +R L  +   GAL      R   L  ++
Sbjct: 130 LLLERMRQPFTSVADFNLRTKLTKPEQRTLARI---GALSGLSAHRRDALWQVE 180


>gi|13959345|sp|Q9CDT7|DPO3_LACLA RecName: Full=DNA polymerase III polC-type; Short=PolIII
          Length = 1638

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 158/787 (20%), Positives = 298/787 (37%), Gaps = 173/787 (21%)

Query: 99   IVLLVSTAEGYQRLIELVS----RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
            + L   T EG + L ++VS    + Y         R+  S L E   EGL++   GS+  
Sbjct: 790  VTLYAKTQEGLKNLFKIVSFGNVKYY-----AGLPRVPRSVL-EANREGLLV---GSACE 840

Query: 155  IDRAF-------FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-----SQVVQ 202
            I   F       F  + ++A  +   F ++F   LY +L     +   +E       +++
Sbjct: 841  IGEVFDAAINKTFEETLEIA--KFYDFIEVFPPALYRSLVVGGSFKSEKELEQTLKDLIK 898

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLM-------AVAHSTVVSQKDRPRVTPDHYLK 255
            +  T   P++AT N  +L+ ED    ++++        +  +    +  +P   P+ + +
Sbjct: 899  IGKTLGKPVLATGNLHYLNPEDAIYREIIVRSLGLGAEINWTQGHGEHAKPLPLPEAHFR 958

Query: 256  NRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPIL-PRFIEKECDDIQKEEE 308
               EM+  FS L E       ++NT ++A     +  V   +  P+ +    D  +  EE
Sbjct: 959  TTDEMLEAFSFLDEKTAREIVIDNTQKMADEFDVLTPVRDDLYTPKMV---FDGGETSEE 1015

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDY-RQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              +R        +   +     G    D    RL+ EL  I    FS  ++I  + ++ +
Sbjct: 1016 RIVR--------LTYEKAHEWYGNPLPDIIDARLEKELRSILGNGFSVVYIISQELVKRS 1067

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
                  VG  RGS   S+ A  + IT+++PL                             
Sbjct: 1068 NDRGYIVG-SRGSVGSSLVATMIGITEVNPLAPHYRCPECQYFECYDDGSFGSGYDMPDK 1126

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D +      V++ +G +   + 
Sbjct: 1127 NCPKCDHKLIKDGHDIPFETFLGFKGDKVPDIDLNFSGDDQPLAHLDVRDIFGEDYAFRA 1186

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V +  +  Y Q                                 + 
Sbjct: 1187 GTIGTVAEKTAFGFV-KGYERDYDQF------------------------------YGNA 1215

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----------- 555
             +DRL   S    G+ R    H  GI++        +P Y DV    PV           
Sbjct: 1216 EIDRLAAGST---GVKRTTGQHPGGIIV--------IPNYMDVYDFSPVQFPADDVNAEW 1264

Query: 556  --TQFNMKWIEKAGLIKFDFLGLKTLTLLQK--SLDFLAQRGVKVDLSLIPFDDHETYHL 611
              T F+   I    ++K D LG    T+++K  SL  +  +        IP DD     L
Sbjct: 1265 QTTHFDFHAIHD-NILKLDILGHDDPTMIRKLQSLSGIVPQD-------IPMDDPGVMKL 1316

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
             T   +LG+ + E  G++    G+        + +++  +P    +++  +   +G +  
Sbjct: 1317 FTGTESLGLTE-EQLGVKLGTLGIPEMGTFTSMNMIAEAKPKNFADLLQISGLSHGTDVW 1375

Query: 672  V-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
              +   LI   + +   VI  ++ +M       L +G + +  + +R+ M  KI  E   
Sbjct: 1376 SGNAQDLIRSGIADLSSVIGCRDDIMVYLIHKGLENGLAFTIMERVRKGMWNKIPAE--- 1432

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++E+++    ++ + +       E  +K   Y F K+HAAAY +++ + A+ K H+P+ +
Sbjct: 1433 EREKYVEAMREHDVPEWY----IESCSKIK-YMFPKAHAAAYIMMALRVAYFKVHHPILY 1487

Query: 788  LAASMTL 794
              A  ++
Sbjct: 1488 YCAWFSI 1494


>gi|313891131|ref|ZP_07824750.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pseudoporcinus SPIN 20026]
 gi|313120494|gb|EFR43614.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pseudoporcinus SPIN 20026]
          Length = 1466

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 92/418 (22%), Positives = 160/418 (38%), Gaps = 94/418 (22%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K A   V +
Sbjct: 970  FETFLGFDGDKVPDIDLNFSGDDQPNAHLDVRDIFGAEYAFRAGTVGTVAEKTAYGFV-K 1028

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +  + ++ R                              D  VDRL   +    G+ R
Sbjct: 1029 GYERDFGKMYR------------------------------DAEVDRL---AAGAAGVKR 1055

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 1056 TTGQHPGGIVV--------IPNYMDVYDFTPVQFPAEDVTASWQTTHFNFHDIDE-NVLK 1106

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKG 616
             D LG    T+++K  D        +D   IP DD     L               T  G
Sbjct: 1107 LDILGHDDPTMIRKLQDLSG-----IDPKSIPVDDPGVMALFSGTEILGVTPEQIGTPTG 1161

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
             LGI +  ++ +R  +    P    +++ L  L       ++ + N +   KE I ++  
Sbjct: 1162 MLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHG---TDVWLGNAQDLIKEGIATLKT 1218

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I         +++Y    +  A L    + +  + +R+ +  KI E+   ++  +I   
Sbjct: 1219 VIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRKGLWLKISED---ERNSYIEAM 1267

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             KN +         E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1268 RKNHVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHHPIMYYCAYFSI 1320


>gi|15674106|ref|NP_268281.1| DNA polymerase III PolC [Lactococcus lactis subsp. lactis Il1403]
 gi|12725180|gb|AAK06222.1|AE006440_8 DNA polymerase III, alpha chain [Lactococcus lactis subsp. lactis
            Il1403]
          Length = 1658

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 158/787 (20%), Positives = 298/787 (37%), Gaps = 173/787 (21%)

Query: 99   IVLLVSTAEGYQRLIELVS----RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
            + L   T EG + L ++VS    + Y         R+  S L E   EGL++   GS+  
Sbjct: 810  VTLYAKTQEGLKNLFKIVSFGNVKYY-----AGLPRVPRSVL-EANREGLLV---GSACE 860

Query: 155  IDRAF-------FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-----SQVVQ 202
            I   F       F  + ++A  +   F ++F   LY +L     +   +E       +++
Sbjct: 861  IGEVFDAAINKTFEETLEIA--KFYDFIEVFPPALYRSLVVGGSFKSEKELEQTLKDLIK 918

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLM-------AVAHSTVVSQKDRPRVTPDHYLK 255
            +  T   P++AT N  +L+ ED    ++++        +  +    +  +P   P+ + +
Sbjct: 919  IGKTLGKPVLATGNLHYLNPEDAIYREIIVRSLGLGAEINWTQGHGEHAKPLPLPEAHFR 978

Query: 256  NRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPIL-PRFIEKECDDIQKEEE 308
               EM+  FS L E       ++NT ++A     +  V   +  P+ +    D  +  EE
Sbjct: 979  TTDEMLEAFSFLDEKTAREIVIDNTQKMADEFDVLTPVRDDLYTPKMV---FDGGETSEE 1035

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDY-RQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              +R        +   +     G    D    RL+ EL  I    FS  ++I  + ++ +
Sbjct: 1036 RIVR--------LTYEKAHEWYGNPLPDIIDARLEKELRSILGNGFSVVYIISQELVKRS 1087

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
                  VG  RGS   S+ A  + IT+++PL                             
Sbjct: 1088 NDRGYIVG-SRGSVGSSLVATMIGITEVNPLAPHYRCPECQYFECYDDGSFGSGYDMPDK 1146

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D +      V++ +G +   + 
Sbjct: 1147 NCPKCDHKLIKDGHDIPFETFLGFKGDKVPDIDLNFSGDDQPLAHLDVRDIFGEDYAFRA 1206

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V +  +  Y Q                                 + 
Sbjct: 1207 GTIGTVAEKTAFGFV-KGYERDYDQF------------------------------YGNA 1235

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV----------- 555
             +DRL   S    G+ R    H  GI++        +P Y DV    PV           
Sbjct: 1236 EIDRLAAGST---GVKRTTGQHPGGIIV--------IPNYMDVYDFSPVQFPADDVNAEW 1284

Query: 556  --TQFNMKWIEKAGLIKFDFLGLKTLTLLQK--SLDFLAQRGVKVDLSLIPFDDHETYHL 611
              T F+   I    ++K D LG    T+++K  SL  +  +        IP DD     L
Sbjct: 1285 QTTHFDFHAIHD-NILKLDILGHDDPTMIRKLQSLSGIVPQD-------IPMDDPGVMKL 1336

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
             T   +LG+ + E  G++    G+        + +++  +P    +++  +   +G +  
Sbjct: 1337 FTGTESLGLTE-EQLGVKLGTLGIPEMGTFTSMNMIAEAKPKNFADLLQISGLSHGTDVW 1395

Query: 672  V-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
              +   LI   + +   VI  ++ +M       L +G + +  + +R+ M  KI  E   
Sbjct: 1396 SGNAQDLIRSGIADLSSVIGCRDDIMVYLIHKGLENGLAFTIMERVRKGMWNKIPAE--- 1452

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++E+++    ++ + +       E  +K   Y F K+HAAAY +++ + A+ K H+P+ +
Sbjct: 1453 EREKYVEAMREHDVPEWY----IESCSKIK-YMFPKAHAAAYIMMALRVAYFKVHHPILY 1507

Query: 788  LAASMTL 794
              A  ++
Sbjct: 1508 YCAWFSI 1514


>gi|21911223|ref|NP_665491.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS315]
 gi|28896601|ref|NP_802951.1| DNA polymerase III PolC [Streptococcus pyogenes SSI-1]
 gi|25452927|sp|Q8K5S8|DPO3_STRP3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|21905436|gb|AAM80294.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
            MGAS315]
 gi|28811855|dbj|BAC64784.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
            SSI-1]
          Length = 1465

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 159/418 (38%), Gaps = 94/418 (22%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K A   V +
Sbjct: 969  FETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGAEYAFRAGTVGTVAEKTAYGFV-K 1027

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +  Y +  R                              D  VDRL   +    G+ R
Sbjct: 1028 GYERDYGKFYR------------------------------DAEVDRL---AAGAAGVKR 1054

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 1055 TTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLK 1105

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKG 616
             D LG    T+++K  D        +D   IP DD     L               T  G
Sbjct: 1106 LDILGHDDPTMIRKLQDLSG-----IDPITIPADDPGVMALFSGTEVLGVTPEQIGTPTG 1160

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
             LGI +  ++ +R  +    P    +++ L  L       ++ + N +   KE I ++  
Sbjct: 1161 MLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHG---TDVWLGNAQDLIKEGIATLKT 1217

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I         +++Y    +  A L    + +  + +R+ +  KI EE   ++  +I   
Sbjct: 1218 VIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIDAM 1266

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             +N +         E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1267 RENNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHHPIMYYCAYFSI 1319


>gi|323466335|gb|ADX70022.1| DNA polymerase subunit III [Lactobacillus helveticus H10]
          Length = 1436

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 106/490 (21%), Positives = 191/490 (38%), Gaps = 93/490 (18%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
            P+VAT ++ ++     E HD +   +  S   S  +R +  PD +  +  EM+  FS L 
Sbjct: 728  PVVATGDAHYV-----EPHDAIYRTILISAQRSNPNRNKPQPDLHFYSTQEMLDAFSFLG 782

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK---EEENELRNKAVAGL 319
            E       ++NT +IA   S I  +   + P  I    ++++K   ++  EL  K +  +
Sbjct: 783  EDIAKEIVIDNTNKIAYEISEIQPIKDGLYPPHIAHADEEMKKLTYDKAYELYGKPLPKI 842

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                              + R+D ELN I    ++  +LI    +  + K+   VG  RG
Sbjct: 843  -----------------VKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRG 884

Query: 380  SGAGSVTAYALTITDIDPL---------RFSLLFER------FLNPDRMSMPDFDIDFCQ 424
            S   S+ A    IT+++PL         ++S  FE       F  PD+ + P       +
Sbjct: 885  SVGSSLVATMSGITEVNPLAPHYRCPKCKYSQFFENGEYGSGFDLPDK-ACPKCGTQLVK 943

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D +D         +G ++V  I    S   +    +  R +              P++  
Sbjct: 944  DGQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM------------FGPDNSY 990

Query: 485  HPVSLQAIADDSRFREARLADPSVD------RLLEISQKLEGLYRHASTHAAGIVI--GD 536
               ++  +AD + +  A+  D   D       L  ++  + G+ R    H AGIV+   D
Sbjct: 991  RAGTIATVADKTAYGYAKHFDEERDLKARNAELDRLASGIRGVKRTTGQHPAGIVVVPDD 1050

Query: 537  RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
              +    P+     DV +   +T ++   I    ++KFD LG    T+++   D      
Sbjct: 1051 MDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDPTMIRHLQDLSG--- 1106

Query: 594  VKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDC 639
              +D   IP DD     L ++               GTLG+ +  +  +R  LE  +P  
Sbjct: 1107 --IDPLTIPPDDPGVMSLFSSPKILGVTPEQIQSETGTLGVPEFGTRFVRGMLEETKPTT 1164

Query: 640  IEDIIALVSL 649
              +++ +  L
Sbjct: 1165 FAELLQISGL 1174


>gi|325847082|ref|ZP_08169908.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481054|gb|EGC84099.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 1010

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 158/861 (18%), Positives = 316/861 (36%), Gaps = 215/861 (24%)

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK--------LFGDRLYVNLQRHRGYD 193
           EGLI+ +GG  G + +A   + S+     +  F          +F D L     R++   
Sbjct: 228 EGLIIGSGGKDGLLFKAIRDDYSEEKIDEICEFFDFFQIEALGVFADDLENGSIRNKEQI 287

Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                ++++L   H+  +VAT +  ++ ++DY   ++L                  P +Y
Sbjct: 288 IEINKKIIELGKKHDKLVVATGSVRYMEKKDYVLRNILHKGQFFHYREN------NPLYY 341

Query: 254 LKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           LK  +EM+  F  L +       ++NT++I+ +   I+ +     P  IE       K  
Sbjct: 342 LKTTNEMLDEFYYLDDQTKMEVVIDNTIKISDQIESIMPIPHETFPPKIEGS----DKRL 397

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
           ++    KA++     L +            + RLD EL+ I    ++  ++I  + ++ +
Sbjct: 398 KDTTYEKAISIYGDPLPELV----------KTRLDKELDSIISNGYAVLYIIAKELVEKS 447

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
            ++   VG  RGS   S  A    IT+++PL                             
Sbjct: 448 NRDGYLVG-SRGSVGSSFAATMANITEVNPLAPHYICPNCKHSEFITDGSIGAGIDLPDK 506

Query: 400 -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                          + FE FL  +    PD D++F  + +  + +Y +  +G  +V + 
Sbjct: 507 TCPKCGTEMNKDGHDIPFEVFLGFEGDKEPDIDLNFAGEYQPTIHKYTEELFGEGKVFRA 566

Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
            T G+++   A   + + ++                                 E  L++ 
Sbjct: 567 GTIGTIKDNTAFGYIKKYMED-------------------------------NELTLSNA 595

Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMK 561
            + +     + L  + R    H  G++I   D+ +    P+     D + D+  T F   
Sbjct: 596 QIRKY---QRGLFDVKRTTGQHPGGLMIVPNDKEIYDFSPVQYPADDGKDDIKTTHFTYN 652

Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK------ 615
            +    ++K D LG    T+++   D      +K+ +     DD    ++ ++       
Sbjct: 653 MMHGV-ILKLDLLGHDVPTIIRSLQDLTNTDPLKLQM-----DDENVMNIFSSTKPLNIK 706

Query: 616 --------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN- 666
                   GTLGI +  +S +R  L+   P    ++  +  L         V  NN ++ 
Sbjct: 707 YDFSNNEIGTLGIPEFGTSFVRGMLKDTFPTKFSEMTRISGLSHGTD----VWLNNAQDL 762

Query: 667 ------GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                 G ++I+S     D ++     + + +++  QI +             +   GK+
Sbjct: 763 VKSKTAGFDQIISTR---DDIMNSLINLGLDKKKSFQIME-------------KVRKGKE 806

Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
           + EE        ++   +N +      +  ++      Y F K+HA AY ++SY+ A+ K
Sbjct: 807 LSEET-------LNYMRENKVPDWYIDSCLKI-----KYLFPKAHAVAYCLMSYRIAYYK 854

Query: 781 THYPVEFLAA-------------------SMTLEMDNVEKIKKFCQDARQFNIQ-IMPPS 820
            +YP  F A                    S+   ++ + +++K  Q  R+ N++ ++  +
Sbjct: 855 VYYPKAFYATYFSTKLNDFQYSVIVKGLKSIQYALNEINQLEKPTQ--REKNLRSLLEVA 912

Query: 821 VNTPCVDFKVGDNRIYYS----------------LAAIKGVGTTTARHIMEASADKPFDS 864
                 D K+    +Y S                L+A+  V    A+ ++E      F S
Sbjct: 913 EEMAARDIKIKKADLYKSEAVKFILDEDGEILPPLSAVDDVSEAMAKDVVEEREKAKFIS 972

Query: 865 LEDFCSRVDSKKLNRRVLESL 885
           +ED   R     LN+  L SL
Sbjct: 973 IEDLKKRT---SLNKNALNSL 990


>gi|260101367|ref|ZP_05751604.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075]
 gi|260084819|gb|EEW68939.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075]
          Length = 1436

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 106/490 (21%), Positives = 191/490 (38%), Gaps = 93/490 (18%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
            P+VAT ++ ++     E HD +   +  S   S  +R +  PD +  +  EM+  FS L 
Sbjct: 728  PVVATGDAHYV-----EPHDAIYRTILISAQRSNPNRNKPQPDLHFYSTQEMLDAFSFLG 782

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK---EEENELRNKAVAGL 319
            E       ++NT +IA   S I  +   + P  I    ++++K   ++  EL  K +  +
Sbjct: 783  EDIAKEIVIDNTNKIADEISEIQPIKDGLYPPHIAHADEEMKKLTYDKAYELYGKPLPKI 842

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                              + R+D ELN I    ++  +LI    +  + K+   VG  RG
Sbjct: 843  -----------------VKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRG 884

Query: 380  SGAGSVTAYALTITDIDPL---------RFSLLFER------FLNPDRMSMPDFDIDFCQ 424
            S   S+ A    IT+++PL         ++S  FE       F  PD+ + P       +
Sbjct: 885  SVGSSLVATMSGITEVNPLAPHYRCPKCKYSQFFENGEYGSGFDLPDK-ACPKCGTQLVK 943

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D +D         +G ++V  I    S   +    +  R +              P++  
Sbjct: 944  DGQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM------------FGPDNSY 990

Query: 485  HPVSLQAIADDSRFREARLADPSVD------RLLEISQKLEGLYRHASTHAAGIVI--GD 536
               ++  +AD + +  A+  D   D       L  ++  + G+ R    H AGIV+   D
Sbjct: 991  RAGTIATVADKTAYGYAKHFDEERDLKARNAELDRLASGIRGVKRTTGQHPAGIVVVPDD 1050

Query: 537  RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
              +    P+     DV +   +T ++   I    ++KFD LG    T+++   D      
Sbjct: 1051 MDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDPTMIRHLQDLSG--- 1106

Query: 594  VKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDC 639
              +D   IP DD     L ++               GTLG+ +  +  +R  LE  +P  
Sbjct: 1107 --IDPLTIPPDDPGVMSLFSSPKILGVTPEQIQSETGTLGVPEFGTRFVRGMLEETKPTT 1164

Query: 640  IEDIIALVSL 649
              +++ +  L
Sbjct: 1165 FAELLQISGL 1174


>gi|161507686|ref|YP_001577640.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348675|gb|ABX27349.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 1438

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 106/490 (21%), Positives = 191/490 (38%), Gaps = 93/490 (18%)

Query: 210  PLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
            P+VAT ++ ++     E HD +   +  S   S  +R +  PD +  +  EM+  FS L 
Sbjct: 730  PVVATGDAHYV-----EPHDAIYRTILISAQRSNPNRNKPQPDLHFYSTQEMLDAFSFLG 784

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK---EEENELRNKAVAGL 319
            E       ++NT +IA   S I  +   + P  I    ++++K   ++  EL  K +  +
Sbjct: 785  EDIAKEIVIDNTNKIADEISEIQPIKDGLYPPHIAHADEEMKKLTYDKAYELYGKPLPKI 844

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                              + R+D ELN I    ++  +LI    +  + K+   VG  RG
Sbjct: 845  -----------------VKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRG 886

Query: 380  SGAGSVTAYALTITDIDPL---------RFSLLFER------FLNPDRMSMPDFDIDFCQ 424
            S   S+ A    IT+++PL         ++S  FE       F  PD+ + P       +
Sbjct: 887  SVGSSLVATMSGITEVNPLAPHYRCPKCKYSQFFENGEYGSGFDLPDK-ACPKCGTQLVK 945

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D +D         +G ++V  I    S   +    +  R +              P++  
Sbjct: 946  DGQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM------------FGPDNSY 992

Query: 485  HPVSLQAIADDSRFREARLADPSVD------RLLEISQKLEGLYRHASTHAAGIVI--GD 536
               ++  +AD + +  A+  D   D       L  ++  + G+ R    H AGIV+   D
Sbjct: 993  RAGTIATVADKTAYGYAKHFDEERDLKARNAELDRLASGIRGVKRTTGQHPAGIVVVPDD 1052

Query: 537  RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
              +    P+     DV +   +T ++   I    ++KFD LG    T+++   D      
Sbjct: 1053 MDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDPTMIRHLQDLSG--- 1108

Query: 594  VKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDC 639
              +D   IP DD     L ++               GTLG+ +  +  +R  LE  +P  
Sbjct: 1109 --IDPLTIPPDDPGVMSLFSSPKILGVTPEQIQSETGTLGVPEFGTRFVRGMLEETKPTT 1166

Query: 640  IEDIIALVSL 649
              +++ +  L
Sbjct: 1167 FAELLQISGL 1176


>gi|317474981|ref|ZP_07934250.1| dnaE protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908884|gb|EFV30569.1| dnaE protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 585

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 39/60 (65%)

Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
           YFL+  D ++ A +  I  G GRGS  GS+ +Y L IT IDPL++ L+F RFL P+R  +
Sbjct: 438 YFLVQWDMVREAHRRGIATGIGRGSAGGSLVSYLLGITSIDPLKYDLIFSRFLVPERCGL 497


>gi|47458892|ref|YP_015754.1| DNA polymerase III PolC [Mycoplasma mobile 163K]
 gi|47458220|gb|AAT27543.1| DNA polymerase III alpha subunit [Mycoplasma mobile 163K]
          Length = 1433

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 133/637 (20%), Positives = 229/637 (35%), Gaps = 149/637 (23%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            R++ ELN I    +   + I    +  + ++   VG  RGS   S+ AY   IT+++PL 
Sbjct: 837  RIEKELNPIIEQGYDVIYWISHKIVAKSLEDGYIVG-SRGSVGSSLVAYLSGITEVNPLP 895

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE--------------RVAQ 445
                            P +    C+D   E I+ +    G++              R  Q
Sbjct: 896  ----------------PHYICSNCKDC--EFIKNLDITSGYDLPHKNCNNCYKALKREGQ 937

Query: 446  IITFGSLQAKAALR--DVGRALQMPYSQV--DRLCKLIPNDPAHPVSLQAIADDSRFREA 501
             I F +     A +  D+       Y  +  D + K    D        +   D      
Sbjct: 938  TIPFETFLGFGANKVPDIDLNFSNEYQHIVHDEVRKWFGEDHCFRAGTISKTADKTAYGY 997

Query: 502  RLADPSVDRLL-------EISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDV 549
             LA    + L         ++ K+ G  R    H  GI++   D  +    P+     D 
Sbjct: 998  VLAWAEENNLTFSNAFIGYLASKIVGTKRTTGQHPGGIIVIPKDFSVEDFTPINFPANDP 1057

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
             S    T F+   I    ++K D LG    T    ++ FL      V++  IPF+D +  
Sbjct: 1058 NSSWKTTHFDFHAIHD-NVLKLDLLGHNDPT----AIKFLTSL-TNVNVFDIPFNDEKVL 1111

Query: 610  HLLTTK---------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             L T+                G LG  +  ++ +R+ L   +     D+I++  L     
Sbjct: 1112 SLFTSTKALNIKPEDISGEHTGALGFPEFGTTFVRKMLVSAKAKSFSDLISVSGLSHGTD 1171

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
                 V+NN  N ++ I+  +  +  ++     ++++   + +    L  + + E   +R
Sbjct: 1172 -----VWNN--NAEDLILKKNLQLKDIISCRDDIMVFL--ITKGVNELKAFQIMEN--VR 1220

Query: 715  RAMGKKIKEEM----DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +  G   +EE      K  + +I   +K                    Y F K+HAAAY 
Sbjct: 1221 KGKGLNSEEEQLLKAHKVSDWYIDSLNK------------------IKYMFPKAHAAAYV 1262

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNV-------------EKIKKFCQD--------- 808
            +++++ AW K +YP+EF A+  T   D +             EK+  F +          
Sbjct: 1263 MMAWRIAWFKLYYPLEFYASYFTTRADFIDIKIMSSTKKTISEKLSDFKRRRNSKGEDKL 1322

Query: 809  ------------------ARQFNIQIMPPSVNTPCVDFKVGD---NRIYYSLAAIKGVGT 847
                              AR F  +I   S+N       + D   N +     A+ G+G 
Sbjct: 1323 SAKEQGLITVLEIAEEMYARGF--KISKISINKSEATNWIIDKESNSLIPPFNAMDGLGV 1380

Query: 848  TTARHIMEASADKPFDSLEDFCSRVD-SKKLNRRVLE 883
              A  I+E    KPF S+ED   R   +K LN + +E
Sbjct: 1381 AVAESIIEQRKKKPFISIEDVIERTSVNKTLNEKFIE 1417


>gi|306826600|ref|ZP_07459906.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782]
 gi|304431208|gb|EFM34211.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782]
          Length = 1465

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 92/418 (22%), Positives = 159/418 (38%), Gaps = 94/418 (22%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K A   V +
Sbjct: 969  FETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-K 1027

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +  Y +  R                              D  VDRL   +    G+ R
Sbjct: 1028 GYERDYGKFYR------------------------------DAEVDRL---AAGAAGVKR 1054

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 1055 TTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLK 1105

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKG 616
             D LG    T+++K  D        +D   IP DD     L               T  G
Sbjct: 1106 LDILGHDDPTMIRKLQDLSG-----IDPITIPADDPGVMALFSGTEILGVTPEQIGTPTG 1160

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
             LGI +  ++ +R  +    P    +++ L  L       ++ + N +   KE + ++  
Sbjct: 1161 MLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHG---TDVWLGNAQDLIKEGVATLKT 1217

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I         +++Y    +  A L    + +  + +R+ +  KI EE   ++  +I   
Sbjct: 1218 VIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIDAM 1266

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             +N +         E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1267 RENNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHHPIMYYCAYFSI 1319


>gi|323126468|gb|ADX23765.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
            equisimilis ATCC 12394]
          Length = 1465

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 159/418 (38%), Gaps = 94/418 (22%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K A   V +
Sbjct: 969  FETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-K 1027

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +  Y +  R                              D  VDRL   +    G+ R
Sbjct: 1028 GYERDYGKFYR------------------------------DAEVDRL---AAGAAGVKR 1054

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 1055 TTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLK 1105

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKG 616
             D LG    T+++K  D        +D   IP DD     L               T  G
Sbjct: 1106 LDILGHDDPTMIRKLQDLSG-----IDPITIPADDPGVMALFSGTEVLGVTPEQIGTPTG 1160

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
             LGI +  ++ +R  +    P    +++ L  L       ++ + N +   KE I ++  
Sbjct: 1161 MLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHG---TDVWLGNAQDLIKEGIATLKT 1217

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I         +++Y    +  A L    + +  + +R+ +  KI EE   ++  +I   
Sbjct: 1218 VIGC----RDDIMVY----LMHAGLQPKMAFTIMERVRKGLWLKISEE---ERNGYIDAM 1266

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             +N +         E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1267 RENNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHHPLMYYCAYFSI 1319


>gi|251781676|ref|YP_002995978.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
            equisimilis GGS_124]
 gi|242390305|dbj|BAH80764.1| DNA polymerase III subunit alpha [Streptococcus dysgalactiae subsp.
            equisimilis GGS_124]
          Length = 1465

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 159/418 (38%), Gaps = 94/418 (22%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K A   V +
Sbjct: 969  FETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGAEYAFRAGTVGTVAEKTAYGFV-K 1027

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +  Y +  R                              D  VDRL   +    G+ R
Sbjct: 1028 GYERDYGKFYR------------------------------DAEVDRL---AAGAAGVKR 1054

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 1055 TTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLK 1105

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKG 616
             D LG    T+++K  D        +D   IP DD     L               T  G
Sbjct: 1106 LDILGHDDPTMIRKLQDLSG-----IDPITIPADDPGVMALFSGTEVLGVTPEQIGTPTG 1160

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
             LGI +  ++ +R  +    P    +++ L  L       ++ + N +   KE I ++  
Sbjct: 1161 MLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHG---TDVWLGNAQDLIKEGIATLKT 1217

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I         +++Y    +  A L    + +  + +R+ +  KI EE   ++  +I   
Sbjct: 1218 VIGC----RDDIMVY----LMHAGLQPKMAFTIMERVRKGLWLKISEE---ERNGYIDAM 1266

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             +N +         E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1267 RENNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHHPLMYYCAYFSI 1319


>gi|283769479|ref|ZP_06342375.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia
            extructa W1219]
 gi|283103747|gb|EFC05133.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia
            extructa W1219]
          Length = 1442

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 137/695 (19%), Positives = 242/695 (34%), Gaps = 185/695 (26%)

Query: 194  RYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLM------AVAHSTVV--SQK 243
            R +E Q   +A  HEL  P++AT++  +  +E+    D+ +       +AH   +   Q 
Sbjct: 697  RLKEVQQRMIAMAHELELPILATSDCHYCKQEEKIFRDIYITAKGVGGIAHPLYIRNEQI 756

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEA-------LENTVEIARRCSFILQVHAPILPRFI 296
             R    PD +L+   EM+  FS L  +       L+   ++ +    I  V     P  I
Sbjct: 757  RRSHPNPDQHLRLTDEMIKEFSWLNNSQLVEELVLDTPHQLFKEIEEIEPVPKGTYPPII 816

Query: 297  EKECDDIQKE-EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            E   D +++  ++  +      G    L Q             +RLD EL+ I R  F  
Sbjct: 817  EGSDDQLRELCQKTAMDRYGFRGKVPDLVQ-------------KRLDNELDNIIRNGFGV 863

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------ 403
            ++ I +  +    ++   VG  RGS   S  A    IT+++PL    L            
Sbjct: 864  HYYIASLLVMKTNEDGYVVG-SRGSVGSSFAATMSHITEVNPLPPHYLCPQCHYSEFFLN 922

Query: 404  -----------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                         F+ FL  +    PD D++F    + +   ++
Sbjct: 923  GEVLSGFDLEDKSCPHCGAIMKGNGHNIPFQTFLGFNADKTPDIDLNFSDLYQAKAHNFI 982

Query: 435  QNKYGHERVAQIITFGSLQAKAAL-------RDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            ++ +G E   +  T G++  K A         D+G     P  +                
Sbjct: 983  KDYFGEEHAFRAGTIGTVAEKTAFGYVKGYEEDMGVQFSYPMKEY--------------- 1027

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPM 545
                                      ++   + + R    H  GIVI   +  +    P+
Sbjct: 1028 --------------------------LAMHCQDVKRTTGQHPGGIVIVPSNHVVEDFTPI 1061

Query: 546  YRDVRSDLPVTQFNMKWIEKAG-LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                    P    + ++ +    ++KFD LG    T ++     L Q    V    IP +
Sbjct: 1062 QYPSNQPGPWKTTHFEYHDYGDQILKFDILGHVDPTSMR-----LLQEIATVKPMDIPMN 1116

Query: 605  DHET----------------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            D +T                YH  T  G +G+ +  ++  R+ L+   P    D+  L  
Sbjct: 1117 DRDTLSLFYEDKALKADPRLYHQET--GAVGLPEFGTANTRRVLQETNPHTFSDLTILSG 1174

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM-----QIAQLLS 703
            L     +          N +E +   HPL +        VI  ++ +M     +  + L 
Sbjct: 1175 LTHGTDV-------WAGNAEELVKQGHPLNE--------VIGCRDDIMTYLLDKKLEPLD 1219

Query: 704  GYSLSEADVLRRAMGKKIKEEMDK-QKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
             + + E+  +R+  GK + EE +K  +E  +     +   K               Y F 
Sbjct: 1220 SFKIMES--VRK--GKGLTEEQEKTMREHQVPDWYIDSCKKI-------------KYMFP 1262

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            K+HA AY +++ + AW K H P+ F    +TL  D
Sbjct: 1263 KAHAVAYVMMAVRIAWYKVHEPINFYIQYLTLRCD 1297


>gi|139474447|ref|YP_001129163.1| DNA polymerase III PolC [Streptococcus pyogenes str. Manfredo]
 gi|166217453|sp|A2RGI3|DPO3_STRPG RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|134272694|emb|CAM30965.1| DNA polymerase III PolC-type [Streptococcus pyogenes str. Manfredo]
          Length = 1465

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 92/418 (22%), Positives = 159/418 (38%), Gaps = 94/418 (22%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K A   V +
Sbjct: 969  FETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-K 1027

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +  Y +  R                              D  VDRL   +    G+ R
Sbjct: 1028 GYERDYGKFYR------------------------------DAEVDRL---AAGAAGVKR 1054

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 1055 TTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLK 1105

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKG 616
             D LG    T+++K  D        +D   IP DD     L               T  G
Sbjct: 1106 LDILGHDDPTMIRKLQDLSG-----IDPITIPADDPGVMALFSGTEILGVTPEQIGTPTG 1160

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
             LGI +  ++ +R  +    P    +++ L  L       ++ + N +   KE + ++  
Sbjct: 1161 MLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHG---TDVWLGNAQDLIKEGVATLKT 1217

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I         +++Y    +  A L    + +  + +R+ +  KI EE   ++  +I   
Sbjct: 1218 VIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIDAM 1266

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             +N +         E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1267 RENNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHHPIMYYCAYFSI 1319


>gi|148543926|ref|YP_001271296.1| DNA polymerase III PolC [Lactobacillus reuteri DSM 20016]
 gi|184153322|ref|YP_001841663.1| DNA polymerase III PolC [Lactobacillus reuteri JCM 1112]
 gi|227364835|ref|ZP_03848882.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3]
 gi|325682539|ref|ZP_08162056.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A]
 gi|166918295|sp|A5VJD5|DPO3_LACRD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|148530960|gb|ABQ82959.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
            reuteri DSM 20016]
 gi|183224666|dbj|BAG25183.1| DNA polymerase III alpha subunit [Lactobacillus reuteri JCM 1112]
 gi|227070098|gb|EEI08474.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3]
 gi|324978378|gb|EGC15328.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A]
          Length = 1443

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 183/885 (20%), Positives = 334/885 (37%), Gaps = 201/885 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            + +   T  G + L +LVS +  ++   +  RI  + L +   EGL++ T  SSG +  A
Sbjct: 619  VTIFAQTQAGLKNLFKLVS-LSNVEYFYRVPRIPRTVLTKY-REGLLLGTACSSGEVFTA 676

Query: 159  FFFNS-SQVAEK-RLLTFKKLFGDRLYVNL-QRH----RGYDRYRESQVVQLAYTHELPL 211
                   Q  EK R   F ++     Y  L ++H     G+       +V+L    E  +
Sbjct: 677  MMEKGYDQALEKARYYDFIEVQPKPNYAPLLEQHVIADEGHLEDILKNMVKLGDELEKTV 736

Query: 212  VATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
            VAT +  +L   D     +L+ +   +  +++ +RP V    + +   EM++ F+ L E 
Sbjct: 737  VATGDVHYLDPHDGIYRKILINSQGGANPLNRTERPEV----HFRTTDEMLNEFAFLGEE 792

Query: 270  -ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA- 327
             A E  VE + +               I  E DD  +  +++L    + G E  +     
Sbjct: 793  KAHELVVENSNK---------------IAAEIDDNIRPVKDKLYPPHMKGAEQEIQDRTW 837

Query: 328  -IAKGYHA----QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
              A+ ++     Q  + R++ ELN I +  FS ++LI    +  + K+   VG  RGS  
Sbjct: 838  NTARKWYGDPLPQLVQDRIELELNSIVKNGFSVHYLIAQRLVAKSNKDGYLVG-SRGSVG 896

Query: 383  GSVTAYALTITDIDPL---------RFS-------------------------------- 401
             SV A    IT+++PL         +F+                                
Sbjct: 897  SSVVATLSGITEVNPLPPHYRCPNCQFTHFYTQGEYSSGFDLPDKKCPKCGTLMVKDGHD 956

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + F+ FL      +PD D++F  D +     Y++  +G + V +  T G++  K A    
Sbjct: 957  IPFQTFLGFKGNKVPDIDLNFSGDYQPIAHNYMKVLFGEKNVFRAGTIGTVADKTA---- 1012

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
                   Y  V                 +A   D+  +E R A+   DRL   ++   G+
Sbjct: 1013 -------YGYV-----------------KAYERDTE-KEFRKAEE--DRL---AKGATGV 1042

Query: 522  YRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             R    H AGI+I   D  +    P+     D  +    T F+   I    ++K D LG 
Sbjct: 1043 KRTTGQHPAGIIIVPDDMDIYDFTPVQYPADDQTAAWETTHFDFHSIHD-NILKMDILGH 1101

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQ 622
               T+++   D        +D   IP DD     L ++               GTLG+ +
Sbjct: 1102 DDPTMIRALQDLSG-----IDPQSIPMDDPGVMALFSSPKVLGVTEEQIQSKTGTLGLPE 1156

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
              +  +R  LE   P     ++ +  L        + + N ++  K+ I +I        
Sbjct: 1157 FGTRFVRGMLEDTHPKNYSQLLQISGLSHG---TGVWLDNAQELIKQGIATI-------- 1205

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK--QKERFISGASKNG 740
                 VI  ++ +M              D++   M  +I  ++ +  +K R I    +  
Sbjct: 1206 ---ANVIGCRDNIM-------------TDLIHYGMDSEISFQIMEHVRKGRGIPDEWQEK 1249

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV------------EFL 788
            + +      +        Y F ++HAAAY +++ + A+ K ++P+            +F 
Sbjct: 1250 MHEANVPQWYMDSCLKIKYMFPRAHAAAYVLMALRIAYFKVYFPLVYYCAFFSVRADDFD 1309

Query: 789  AASMTLEMDNVEKIKKFCQD------ARQFNIQIMPPSVN----------------TPCV 826
              +M+   D V++  K   D      A++ N+  +    N                +   
Sbjct: 1310 VVAMSHGKDAVKQRMKEINDKGNDASAKEKNLLTILELANEMLERGFKFKMVDIEKSDAS 1369

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            D+ +  + +     A+ G+G   A+ I+ A  ++PF S ED   R
Sbjct: 1370 DWLIDGDSLIAPFRAVPGLGLNVAKQIVAAREERPFLSKEDLAER 1414


>gi|167948889|ref|ZP_02535963.1| DNA polymerase III subunit alpha [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 86

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEI 277
           FL+ ED+EAH+V + +     +    RPR+  +  YL+ + EM  +F+D+PEAL N+VEI
Sbjct: 3   FLASEDFEAHEVRVCIHDGRTLEDSRRPRLYSELQYLRTQQEMCELFADIPEALANSVEI 62

Query: 278 ARRCS 282
           A+RCS
Sbjct: 63  AKRCS 67


>gi|77414679|ref|ZP_00790814.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 515]
 gi|77159276|gb|EAO70452.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 515]
          Length = 579

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 106/512 (20%), Positives = 192/512 (37%), Gaps = 110/512 (21%)

Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K A   V +
Sbjct: 83  FETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEEYAFRAGTVGTVAEKTAFGFV-K 141

Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             +  Y++                                 D  V+RL   +    G+ R
Sbjct: 142 GYERDYNKF------------------------------YNDAEVERL---ATGAAGVKR 168

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
               H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 169 STGQHPGGIVV--------IPNYMDVYDFTPVQYPADDMTAAWQTTHFNFHDIDE-NVLK 219

Query: 571 FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            D LG    T+++K  D        +D S I  DD +   L +    LG+ + E  G   
Sbjct: 220 LDILGHDDPTMIRKLQDLSG-----IDPSNILPDDPDVMKLFSGTEVLGVTE-EQIGTPT 273

Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE-KIVSIHPLIDPMLKETQGVI 689
            + G+       +  +V+   P     ++  +   +G +  + +   LI   +     VI
Sbjct: 274 GMLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLSTVI 333

Query: 690 IYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
             ++ +M     A L    + +  + +R+ +  KI E+   ++  +I     N +     
Sbjct: 334 GCRDDIMVYLMHAGLQPKMAFTIMERVRKGLWLKISED---ERNGYIQAMRDNNVPDWY- 389

Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA------------SMTL 794
               E   K   Y F K+HAAAY +++ + A+ K HYP+ +  A            +M+ 
Sbjct: 390 ---IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHYPIFYYCAYFSIRAKAFELRTMSA 445

Query: 795 EMDNVEKIKKFCQDARQFN------------IQIMPPSVN------------TPCVDFKV 830
            +D V+   K   + RQ N            ++++   +             +   DF +
Sbjct: 446 GLDAVKARMKDITEKRQRNEATNVENDLFTTLELVNEMLERGFKFGKLDLYRSHATDFII 505

Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            ++ +     A++G+G   A+ I+ A  D  F
Sbjct: 506 EEDTLIPPFVAMEGLGENVAKQIVRAREDGEF 537


>gi|194467743|ref|ZP_03073729.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23]
 gi|194452596|gb|EDX41494.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23]
          Length = 1443

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 183/885 (20%), Positives = 333/885 (37%), Gaps = 201/885 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            + +   T  G + L +LVS +  ++   +  RI  + L +   EGL++ T  SSG +  A
Sbjct: 619  VTIFAQTQAGLKNLFKLVS-LSNVEYFYRVPRIPRTVLTKY-REGLLLGTACSSGEVFTA 676

Query: 159  FFFNS-SQVAEK-RLLTFKKLFGDRLYVNL-QRHRGYDRYRESQV----VQLAYTHELPL 211
                   Q  EK R   F ++     Y  L ++H   D      +    V+L    E  +
Sbjct: 677  MMEKGYDQALEKARYYDFIEVQPKPNYAPLLEQHVIADEEHLEDILKNMVKLGDELEKTV 736

Query: 212  VATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
            VAT +  +L   D     +L+ +   +  +++ +RP V    + +   EM++ F+ L E 
Sbjct: 737  VATGDVHYLDPHDGIYRKILINSQGGANPLNRTERPEV----HFRTTDEMLNKFAFLGEE 792

Query: 270  -ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA- 327
             A E  VE + +               I  E DD  +  +++L    + G E  +     
Sbjct: 793  KAHELVVENSNK---------------IAAEIDDNIRPVKDKLYPPHMKGAEQEIQDRTW 837

Query: 328  -IAKGYHA----QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
              A+ ++     Q  + R++ ELN I +  FS ++LI    +  + K+   VG  RGS  
Sbjct: 838  NTARKWYGDPLPQLVQDRIELELNSIVKNGFSVHYLIAQRLVAKSNKDGYLVG-SRGSVG 896

Query: 383  GSVTAYALTITDIDPL---------RFS-------------------------------- 401
             SV A    IT+++PL         +F+                                
Sbjct: 897  SSVVATLSGITEVNPLPPHYRCPNCQFTHFYTQGEYSSGFDLPDKKCPKCGTLMVKDGHD 956

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + F+ FL      +PD D++F  D +     Y++  +G + V +  T G++  K A    
Sbjct: 957  IPFQTFLGFKGNKVPDIDLNFSGDYQPIAHNYMKVLFGEKNVFRAGTIGTVADKTA---- 1012

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
                   Y  V                 +A   D+  +E R A+   DRL   ++   G+
Sbjct: 1013 -------YGYV-----------------KAYERDTE-KEFRKAEE--DRL---AKGATGV 1042

Query: 522  YRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             R    H AGI+I   D  +    P+     D  +    T F+   I    ++K D LG 
Sbjct: 1043 KRTTGQHPAGIIIVPDDMDIYDFTPVQYPADDQTAAWETTHFDFHSIHD-NILKMDILGH 1101

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQ 622
               T+++   D        +D   IP DD     L ++               GTLG+ +
Sbjct: 1102 DDPTMIRALQDLSG-----IDPQSIPMDDPGVMALFSSPKVLGVTEEQIQSKTGTLGLPE 1156

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
              +  +R  LE   P     ++ +  L        + + N ++  K+ I +I        
Sbjct: 1157 FGTRFVRGMLEDTHPKNYSQLLQISGLSHGT---GVWLDNAQELIKQGIATI-------- 1205

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK--QKERFISGASKNG 740
                 VI  ++ +M              D++   M  +I  ++ +  +K R I    +  
Sbjct: 1206 ---ANVIGCRDNIM-------------TDLIHYGMDSEISFQIMEHVRKGRGIPDEWQEK 1249

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV------------EFL 788
            + +      +        Y F ++HAAAY +++ + A+ K ++P+            +F 
Sbjct: 1250 MHEANVPQWYMDSCLKIKYMFPRAHAAAYVLMALRIAYFKVYFPLVYYCAFFSVRADDFD 1309

Query: 789  AASMTLEMDNVEKIKKFCQD------ARQFNIQIMPPSVN----------------TPCV 826
              +M+   D V++  K   D      A++ N+  +    N                +   
Sbjct: 1310 VVAMSHGKDAVKQRMKEINDKGNDASAKEKNLLTILELANEMLERGFKFKMVDIEKSDAS 1369

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            D+ +  + +     A+ G+G   A+ I+ A  ++PF S ED   R
Sbjct: 1370 DWLIDGDSLIAPFRAVPGLGLNVAKQIVAAREERPFLSKEDLAER 1414


>gi|116513078|ref|YP_811985.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris SK11]
 gi|116108732|gb|ABJ73872.1| DNA polymerase III catalytic subunit, PolC type [Lactococcus lactis
            subsp. cremoris SK11]
          Length = 1635

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 157/783 (20%), Positives = 299/783 (38%), Gaps = 165/783 (21%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV---RICLSWLQEIGTEGLIMLTGGSSGPI 155
            + L   T EG + L ++VS     +  K      R+  S L E   EGL++ +    G +
Sbjct: 787  VTLYAKTQEGLKNLFKIVS----FENVKYYAGLPRLPRSVL-EANREGLLVGSACEVGEV 841

Query: 156  -DRAF---FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-----SQVVQLAYT 206
             D A    F  + ++A  +   F ++F   LY +L     +   +E       ++++  T
Sbjct: 842  FDAAINKTFEETLEIA--KFYDFIEVFPPALYRSLVVGGSFKSEKELEQTLKDLIKIGKT 899

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLM-------AVAHSTVVSQKDRPRVTPDHYLKNRSE 259
               P++AT N  +L+ ED    ++++        +  +    +  +P   P+ + +   E
Sbjct: 900  LVKPVLATGNLHYLNPEDAIYREIIVRSLGLGAEINWTQGHGEHAKPLPLPEAHFRTTDE 959

Query: 260  MVSIFSDLPE------ALENTVEIARRCSFILQVHAPIL-PRFIEKECDDIQKEEENELR 312
            M+  FS L E       ++NT ++A     +  V   +  P+ +    D  +  EE  +R
Sbjct: 960  MLEAFSFLDEKTAREIVIDNTQKMADEFDVLTPVRDDLYTPKMV---FDGGETSEERIVR 1016

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDY-RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                    +   +     G    D    RL+ EL  I    FS  ++I  + ++ + +  
Sbjct: 1017 --------LTYEKAHEWYGNPLPDIIDARLEKELRSILGNGFSVVYIISQELVKRSNERG 1068

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLR-------------------------------- 399
              VG  RGS   S+ A  + IT+++PL                                 
Sbjct: 1069 YIVG-SRGSVGSSLVATMIGITEVNPLAPHYRCPECQYFECYDDGSFGSGYDMPDKNCPK 1127

Query: 400  ---------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
                       + FE FL      +PD D++F  D +      V++ +G +   +  T G
Sbjct: 1128 CDHKLIKDGHDIPFETFLGFKGDKVPDIDLNFSGDDQPLAHLDVRDIFGEDYAFRAGTIG 1187

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            ++  K A   V +  +  Y Q                                 +  +DR
Sbjct: 1188 TVAEKTAFGFV-KGYERDYDQF------------------------------YGNAEIDR 1216

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQ 557
            L   S    G+ R    H  GI++        +P Y DV    PV             T 
Sbjct: 1217 LAAGST---GVKRTTGQHPGGIIV--------IPNYMDVYDFSPVQFPADDVNAEWQTTH 1265

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQK--SLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            F+   I    ++K D LG    T+++K  SL  +  +        IP DD     L T  
Sbjct: 1266 FDFHAIHD-NILKLDILGHDDPTMIRKLQSLSGIVPQD-------IPMDDPGVMKLFTGT 1317

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
             +LG+ + E  G++    G+        + +++  +P    +++  +   +G +    + 
Sbjct: 1318 ESLGLTE-EQLGVKLGTLGIPEMGTFTSMNMIAEAKPKNFADLLQISGLSHGTDVWSGNA 1376

Query: 675  HPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M       L +G + +  + +R+ M  KI  E   ++E+
Sbjct: 1377 QDLIRSGIADLSSVIGCRDDIMVYLIHKGLENGLAFTIMERVRKGMWNKIPAE---EREK 1433

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            ++    ++ + +       E  +K   Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1434 YVEAMREHEVPEWY----IESCSKIK-YMFPKAHAAAYIMMALRVAYFKVHHPIFYYCAW 1488

Query: 792  MTL 794
             ++
Sbjct: 1489 FSI 1491


>gi|110004377|emb|CAK98715.1| probable dna polymerase III alpha subunit protein [Spiroplasma citri]
          Length = 1453

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 131/662 (19%), Positives = 230/662 (34%), Gaps = 188/662 (28%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL+ ELN I +  F+  + I    +  + ++   VG  RGS   S  A    IT+++PL+
Sbjct: 848  RLERELNAIIKHGFAVIYWIAHKLVDKSLQDGYLVG-SRGSVGSSFVATMSNITEVNPLQ 906

Query: 400  FSLL-----------------------------------------FERFLNPDRMSMPDF 418
               L                                         FE FL  +   +PD 
Sbjct: 907  PHYLCSYCSYSEFIVDGSVKCGYDLSARTCPKCQKPLKGEGHDIPFETFLGFEADKVPDI 966

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +     + +  +G   V +  T  ++  K A   V       Y +   +  L
Sbjct: 967  DLNFSGEYQPIAHDFTKEMFGERSVYRAGTISTVAEKTAYGYVK-----GYFESKNILHL 1021

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GD 536
                                R A L          I++  EG+ R    H  GIV+   +
Sbjct: 1022 K-------------------RRAELE--------RIAKGCEGVKRTTGQHPGGIVVIPNE 1054

Query: 537  RPLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
              +    P+     D++S+   T F+   I    ++K D LG    T L+     + Q  
Sbjct: 1055 YEVEAFTPVNFPADDIKSNWLTTHFDFHAIHD-NVLKLDILGHVDPTALR-----MLQDL 1108

Query: 594  VKVDLSLIPFDDHETYHLLTT---------------KGTLGIFQLESSGMRQALEGMQPD 638
              VD   IP +D     L  +                G +GI +  +  +R+ L   +P 
Sbjct: 1109 TGVDPKTIPTNDEAVLSLFRSLDVLNIKPEDINGEKTGAIGIPEFGTFFVRKMLLDTKPT 1168

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQEQ 694
               D++ +  L       ++ + N ++  + + +SI  +I    D M+      +IY+  
Sbjct: 1169 SFADLVQISGLSHGT---DVWIGNAQELIRNQNISISEVIGCRDDIMVN-----LIYKGL 1220

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEM----DKQKERFISGASKNGISKTIAVNIF 750
              Q     S + + E   +R+  G   + E     +  ++ +I   +K            
Sbjct: 1221 PAQ-----SAFKIMED--VRKGKGLTAEHEQLMRDNNVEQWYIDSCNK------------ 1261

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD---------NVEK 801
                    Y F K+HA AY +++++ AW K +YPVE+ A   +   D           E 
Sbjct: 1262 ------IKYMFPKAHATAYVLMAWRVAWYKINYPVEYYATFFSTRTDVFDIKTILKGAET 1315

Query: 802  IKKFCQDA------RQFN-------------------IQIMPPSVNTPCVDFKVGDNR-- 834
            IK+  +D       + FN                   +++    +    +D K   N+  
Sbjct: 1316 IKQVLRDIQTRLDNKDFNAPNKPTQKEKDLIPVYEIALEMYARGIKMSNIDLKTSRNKNF 1375

Query: 835  -----------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                       I    +AI G+G      I+ A  +KPF S+ D   R +  K +    E
Sbjct: 1376 TVITTENNEKIILPPFSAIDGLGGAVGDSIINARYEKPFLSVADLQKRTNITKAHLESFE 1435

Query: 884  SL 885
             L
Sbjct: 1436 EL 1437


>gi|75677041|ref|YP_319462.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Nitrobacter
           winogradskyi Nb-255]
 gi|74421911|gb|ABA06110.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Nitrobacter
           winogradskyi Nb-255]
          Length = 409

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 6/140 (4%)

Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
           NG  +  A   F  +  F  YGF +S+AA++A+++Y ++W+K H+P  F AA +  +   
Sbjct: 4   NGYDRDFAERTFSQIEGFGSYGFPESYAASFALLAYASSWLKCHHPDVFCAALLNAQPMG 63

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLA--AIKGVGTTTARH 852
                +  +DA++  +++ P  VN    D  +     ++R    L    +KG+    A  
Sbjct: 64  FCAPAQIVRDAKEHGVEVHPVCVNASRWDCTLEMTGCEDRFAVRLGMRMVKGLANADAAA 123

Query: 853 IMEASADKPFDSLEDFCSRV 872
           I+    + PF S++D   R 
Sbjct: 124 IIATRGEAPFISVDDLSRRA 143


>gi|304373374|ref|YP_003856583.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
 gi|304309565|gb|ADM22045.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
          Length = 1457

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 127/636 (19%), Positives = 236/636 (37%), Gaps = 159/636 (25%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ ELN I    +   + I  + +  AK     VG  RGS   SV AY + IT+++PL 
Sbjct: 846  RIEKELNPIIDNGYDVVYWISKELVDKAKSEGQKVG-SRGSVGSSVVAYLIGITEVNPLE 904

Query: 399  -----------RFS-----------------------------LLFERFLNPDRMSMPDF 418
                       +FS                             + FE FL      +PD 
Sbjct: 905  PHYVCNQCKNVKFSTDSNVLSGFDLKDKKCKTCNILYDKDGQNIPFETFLGFKADKVPDI 964

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  D + +   Y++  +G +   +  T      K+A      +L    +++    +L
Sbjct: 965  DLNFAGDFQVQTHNYIRELFGEKFTFRAGTILGYAEKSAF-----SLAKKLNEIQ--TRL 1017

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GD 536
              N+  HP         + +  +  ++  +D L   + K  G+ +    H  GI++   D
Sbjct: 1018 YLNE--HP---------NEYEFSMYSNTFLDFL---ATKTSGVKKTTGQHPGGIIVIPND 1063

Query: 537  RPLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
              + +  P+     D  SD   T F+ + I    ++KFD LG     ++ + L+ L    
Sbjct: 1064 LEIEEFTPINFPANDDNSDWKTTHFDFENIHD-NVLKFDLLGHDD-PIMVRELEKLTNTK 1121

Query: 594  VKVDLSLIPFDDHETYHLLTT---------------KGTLGIFQLESSGMRQALEGMQPD 638
            V+     IP  D +   L ++                G  G+ +  +S +R+ L   + +
Sbjct: 1122 VEN----IPKSDPKIIKLFSSLEPLNIDSKDLPGEQNGARGLPEFGTSFVRRMLNTARVE 1177

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
               D+I +  L            N  ++  E ++S H L        + VI  ++ +M  
Sbjct: 1178 SFSDLIKVSGLSHGT--------NVWQDNAETLISQHNLT------LRDVISCRDDIMLY 1223

Query: 699  AQLLSGYSLSEADVLRRA-MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
                   SL   +++     GK I  E  +  E           +  + +   E L K  
Sbjct: 1224 LINKGVDSLVSFNIMESVRKGKSITVEQQQILE-----------NHNVPIWYIESLKKIK 1272

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD-------------------- 797
             Y F K+HAAAY +++++  + K +YP+ F +   ++ +D                    
Sbjct: 1273 -YMFPKAHAAAYVLMAWRITYYKLYYPLAFYSVYFSIRIDFKNIDALLLPKQQLSSQIMA 1331

Query: 798  -----NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----------------GDNRI 835
                 N +K  K  +  ++  I I+  +       F++                  +N +
Sbjct: 1332 LKQRENSKKEDKLSEKEKKL-IPILEVAEELKARGFEIEKINLNLSQATQWVINEENNSL 1390

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                +++ G+G   A  I+ A  +K F S+EDF  R
Sbjct: 1391 IPPFSSLDGIGEANAAKIIAARTEKSFSSIEDFEKR 1426


>gi|227544953|ref|ZP_03975002.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300910016|ref|ZP_07127476.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112]
 gi|227185064|gb|EEI65135.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300892664|gb|EFK86024.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112]
          Length = 1443

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 183/885 (20%), Positives = 333/885 (37%), Gaps = 201/885 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            + +   T  G + L +LVS +  ++   +  RI  + L +   EGL++ T  SSG +  A
Sbjct: 619  VTIFAQTQAGLKNLFKLVS-LSNVEYFYRVPRIPRTVLTKY-REGLLLGTACSSGEVFTA 676

Query: 159  FFFNS-SQVAEK-RLLTFKKLFGDRLYVNL-QRHRGYDRYRESQV----VQLAYTHELPL 211
                   Q  EK R   F ++     Y  L ++H   D      +    V+L    E  +
Sbjct: 677  MMEKGYDQALEKARYYDFIEVQPKPNYAPLLEQHVIADEDHLEDILKNMVKLGDELEKTV 736

Query: 212  VATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
            VAT +  +L   D     +L+ +   +  +++ +RP V    + +   EM++ F+ L E 
Sbjct: 737  VATGDVHYLDPHDGIYRKILINSQGGANPLNRTERPEV----HFRTTDEMLNEFAFLGEE 792

Query: 270  -ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA- 327
             A E  VE + +               I  E DD  +  +++L    + G E  +     
Sbjct: 793  KAHELVVENSNK---------------IAAEIDDNIRPVKDKLYPPHMKGAEQEIQDRTW 837

Query: 328  -IAKGYHA----QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
              A+ ++     Q  + R++ ELN I +  FS ++LI    +  + K+   VG  RGS  
Sbjct: 838  NTARKWYGDPLPQLVQDRIELELNSIVKNGFSVHYLIAQRLVAKSNKDGYLVG-SRGSVG 896

Query: 383  GSVTAYALTITDIDPL---------RFS-------------------------------- 401
             SV A    IT+++PL         +F+                                
Sbjct: 897  SSVVATLSGITEVNPLPPHYRCPNCQFTHFYTQGEYSSGFDLPDKKCPKCGTLMVKDGHD 956

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + F+ FL      +PD D++F  D +     Y++  +G + V +  T G++  K A    
Sbjct: 957  IPFQTFLGFKGNKVPDIDLNFSGDYQPIAHNYMKVLFGEKNVFRAGTIGTVADKTA---- 1012

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
                   Y  V                 +A   D+  +E R A+   DRL   ++   G+
Sbjct: 1013 -------YGYV-----------------KAYERDTE-KEFRKAEE--DRL---AKGATGV 1042

Query: 522  YRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             R    H AGI+I   D  +    P+     D  +    T F+   I    ++K D LG 
Sbjct: 1043 KRTTGQHPAGIIIVPDDMDIYDFTPVQYPADDQTAAWETTHFDFHSIHD-NILKMDILGH 1101

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQ 622
               T+++   D        +D   IP DD     L ++               GTLG+ +
Sbjct: 1102 DDPTMIRALQDLSG-----IDPQSIPMDDPGVMALFSSPKVLGVTEEQIQSKTGTLGLPE 1156

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
              +  +R  LE   P     ++ +  L        + + N ++  K+ I +I        
Sbjct: 1157 FGTRFVRGMLEDTHPKNYSQLLQISGLSHGT---GVWLDNAQELIKQGIATI-------- 1205

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK--QKERFISGASKNG 740
                 VI  ++ +M              D++   M  +I  ++ +  +K R I    +  
Sbjct: 1206 ---ANVIGCRDNIM-------------TDLIHYGMDSEISFQIMEHVRKGRGIPDEWQEK 1249

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV------------EFL 788
            + +      +        Y F ++HAAAY +++ + A+ K ++P+            +F 
Sbjct: 1250 MHEANVPQWYMDSCLKIKYMFPRAHAAAYVLMALRIAYFKVYFPLVYYCAFFSVRADDFD 1309

Query: 789  AASMTLEMDNVEKIKKFCQD------ARQFNIQIMPPSVN----------------TPCV 826
              +M+   D V++  K   D      A++ N+  +    N                +   
Sbjct: 1310 VVAMSHGKDAVKQRMKEINDKGNDASAKEKNLLTILELANEMLERGFKFKMVDIEKSDAS 1369

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            D+ +  + +     A+ G+G   A+ I+ A  ++PF S ED   R
Sbjct: 1370 DWLIDGDSLIAPFRAVPGLGLNVAKQIVAAREERPFLSKEDLAER 1414


>gi|330723726|gb|AEC46096.1| DNA polymerase III PolC [Mycoplasma hyorhinis MCLD]
          Length = 1457

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 127/636 (19%), Positives = 236/636 (37%), Gaps = 159/636 (25%)

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            R++ ELN I    +   + I  + +  AK     VG  RGS   SV AY + IT+++PL 
Sbjct: 846  RIEKELNPIIDNGYDVVYWISKELVDKAKSEGQKVG-SRGSVGSSVVAYLIGITEVNPLE 904

Query: 399  -----------RFS-----------------------------LLFERFLNPDRMSMPDF 418
                       +FS                             + FE FL      +PD 
Sbjct: 905  PHYVCNQCKNVKFSTDSNVLSGFDLKDKKCKTCNILYDKDGQNIPFETFLGFKADKVPDI 964

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  D + +   Y++  +G +   +  T      K+A      +L    +++    +L
Sbjct: 965  DLNFAGDFQVQTHNYIRELFGEKFTFRAGTILGYAEKSAF-----SLAKKLNEIQ--TRL 1017

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GD 536
              N+  HP         + +  +  ++  +D L   + K  G+ +    H  GI++   D
Sbjct: 1018 YLNE--HP---------NEYEFSMYSNTFLDFL---ATKTSGVKKTTGQHPGGIIVILND 1063

Query: 537  RPLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
              + +  P+     D  SD   T F+ + I    ++KFD LG     ++ + L+ L    
Sbjct: 1064 LEIEEFTPINFPANDDNSDWKTTHFDFENIHD-NVLKFDLLGHDD-PIMVRELEKLTNTK 1121

Query: 594  VKVDLSLIPFDDHETYHLLTT---------------KGTLGIFQLESSGMRQALEGMQPD 638
            V+     IP  D +   L ++                G  G+ +  +S +R+ L   + +
Sbjct: 1122 VEN----IPKSDPKIIKLFSSLEPLNIDSKDLPGEQNGARGLPEFGTSFVRRMLNTARVE 1177

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
               D+I +  L            N  ++  E ++S H L        + VI  ++ +M  
Sbjct: 1178 SFSDLIKVSGLSHGT--------NVWQDNAEALISQHNLT------LRDVISCRDDIMLY 1223

Query: 699  AQLLSGYSLSEADVLRRA-MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
                   SL   +++     GK I  E  +  E           +  + +   E L K  
Sbjct: 1224 LINKGVDSLVSFNIMESVRKGKSITVEQQQILE-----------NHNVPIWYIESLKKIK 1272

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD-------------------- 797
             Y F K+HAAAY +++++  + K +YP+ F +   ++ +D                    
Sbjct: 1273 -YMFPKAHAAAYVLMAWRITYYKLYYPLAFYSVYFSIRIDFKNIDALLLPKQQLSSQIMA 1331

Query: 798  -----NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----------------GDNRI 835
                 N +K  K  +  ++  I I+  +       F++                  +N +
Sbjct: 1332 LKQRENSKKEDKLSEKEKKL-IPILEVAEELKARGFEIEKINLNLSQATQWVINEENNSL 1390

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                +++ G+G   A  I+ A  +K F S+EDF  R
Sbjct: 1391 IPPFSSLDGIGEANAAKIIAARTEKSFSSIEDFEKR 1426


>gi|320528407|ref|ZP_08029569.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204]
 gi|320131321|gb|EFW23889.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204]
          Length = 1449

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 145/686 (21%), Positives = 244/686 (35%), Gaps = 157/686 (22%)

Query: 193  DRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM------AVAHSTVVSQKD 244
            DR +E Q  ++++A    +P+ AT+++ +   E     DV +         H   +  + 
Sbjct: 700  DRLKEVQKRILRMAQKLNIPVCATSDAHYCIPEQKIFRDVYIMSQGVGGTIHPLYIRDEV 759

Query: 245  -RPRV-TPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFIL-----QVHAPILPRF 295
             R R   PD +++   EM   F+  D P+ +E  V       F L      V A   P  
Sbjct: 760  LRLRTKNPDQHIRLTDEMKKEFAWLDDPDLIEEIVVRNPNSIFDLIEEVRPVPAGTYPPV 819

Query: 296  IEKECDDIQK-EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            IE   D ++K   +  +R   + G E ++ +              RL+ EL+ I R  F 
Sbjct: 820  IEGSDDKLRKICHDTAMR---MYGFEGKVPEIVT----------DRLNSELDNIIRNGFG 866

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL----------- 403
             ++ I    ++ +  +   VG  RGS   S TA    IT+++PLR   L           
Sbjct: 867  VHYYIAHLLVKKSNDDGYVVG-SRGSVGSSFTATMSGITEVNPLRPHYLCPKCHYSEFFD 925

Query: 404  ------------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
                                          F+ FL  +    PD D++F  + +     +
Sbjct: 926  DPSIASGFDLPDKVCPHCGETMRGNGHNIPFQTFLGFNADKTPDIDLNFSNEYQWRAHAF 985

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            +++ +G +   +  T G++  K A           +  V   C+                
Sbjct: 986  IKDVFGEDHAFRAGTIGTVAEKTA-----------FGYVQGYCE---------------- 1018

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RD 548
               + + + +  P  D L    Q ++   R    H  GI+I   +       P+     D
Sbjct: 1019 ---KMKISNMRRPMKDYLAHGCQNVK---RTTGQHPGGIIIIPHEYEAEDFTPVQYPAND 1072

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
              S    T ++   I    ++KFD LG    T ++     L Q+   V    IP +D ET
Sbjct: 1073 PTSAWKTTHYDFHDIHD-NVLKFDILGHVDPTAMR-----LLQKIATVKPLDIPMNDIET 1126

Query: 609  YHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              L +                G LG+ +  +   R  LE  +P    D++ +  L     
Sbjct: 1127 LSLFSCDDALKADTRIYKKETGALGLPEFGTRTTRGVLEETRPKKFSDLVIISGLSHGTD 1186

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +          N +E I   H  ID ++     ++ Y          L  ++L   D   
Sbjct: 1187 V-------WAGNAQELIRQGH-TIDEVIGCRDDIMTY----------LLDHNLESLDAF- 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
                 KI E + K K        K+ I   +     E   K   Y F K+HA AY +++ 
Sbjct: 1228 -----KIMESVRKGK-GLTEAWEKSMIEHQVPEWYIESCKKIK-YMFPKAHAVAYVMMAM 1280

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE 800
            + AW K H P+ F    +TL  D  E
Sbjct: 1281 RIAWYKVHEPLNFYIQYLTLRCDTYE 1306


>gi|240146858|ref|ZP_04745459.1| DNA polymerase III, alpha subunit [Roseburia intestinalis L1-82]
 gi|257200984|gb|EEU99268.1| DNA polymerase III, alpha subunit [Roseburia intestinalis L1-82]
          Length = 807

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 135/652 (20%), Positives = 234/652 (35%), Gaps = 155/652 (23%)

Query: 199 QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
           ++V+L  T    +VAT +  FL  ED     ++MA         KD     P  YL+   
Sbjct: 84  RIVKLGETFGKLVVATCDVHFLDPEDEIYRRIIMAGK-----GFKDADDQAP-LYLRTTE 137

Query: 259 EMVSIFSDLPEA------LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
           EM+  F  L  A      + N  +IA  C  I    AP+ P     +C  + +  +  LR
Sbjct: 138 EMLKEFEYLGSAKAEEVVITNPNKIADMCEKI----APVRP----DKCPPVIENSDQMLR 189

Query: 313 NKAVAGLEVRLAQ--GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           +           +   AI K        +RLD ELN I    ++  ++I    +  + ++
Sbjct: 190 DICYTKAHSMYGEELPAIVK--------ERLDRELNSIISNGYAVMYIIAQKLVWKSNED 241

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------- 399
              VG  RGS   S  A    IT+++PL+                               
Sbjct: 242 GYLVG-SRGSVGSSFAATMSGITEVNPLQAHYRCPNCKYSDFDSPEVKAFSGRSGCDMPD 300

Query: 400 --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                         F + FE FL       PD D++F  + + +   Y +  +G+ +  +
Sbjct: 301 KICPVCGEKLVKDGFDIPFETFLGFKGNKEPDIDLNFSGEYQSKAHAYCEVIFGYGQTFR 360

Query: 446 IITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
             T G+L  K A   +      R +     ++DR                          
Sbjct: 361 AGTIGTLADKTAFGYIKNYYEERGIHKRNCEIDR-------------------------- 394

Query: 501 ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY-------RDVRSDL 553
                        I Q   G+ R    H  GIV+   P+ + +  +        D+ +  
Sbjct: 395 -------------IVQGCVGVRRTTGQHPGGIVV--LPVGEEINTFTPVQHPANDMTTAT 439

Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
             T F+   I+   L+K D LG    T+++   D        +D   IP DD     L  
Sbjct: 440 VTTHFDYHSIDH-NLLKLDILGHDDPTMIRMLQDLTG-----IDPVTIPLDDEAVMSLFK 493

Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV- 672
               LG+   +  G+     G+     E  + +V   +P    +++  +   +G +  + 
Sbjct: 494 NTSALGVTPEDIGGIPLGCLGIPEFGTEFAMQMVIDAKPQEFSDLIRISGLSHGTDVWLG 553

Query: 673 SIHPLIDPMLKETQGVIIYQEQVM----QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
           +   LI+  L      I  ++ +M    Q+  L S  S +  + +R+  GK +KEE   +
Sbjct: 554 NAQTLIEQGLATISTAICTRDDIMIYLIQMG-LDSEQSFTIMESVRK--GKGLKEEW--K 608

Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
           +E       +  I   + +           Y F K+HAAAY +++++ A+ K
Sbjct: 609 EEMRAHDVPEWYIDSCLKIK----------YMFPKAHAAAYVMMAWRIAYCK 650


>gi|50915026|ref|YP_060998.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10394]
 gi|73919253|sp|Q5X9U8|DPO3_STRP6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|50904100|gb|AAT87815.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10394]
          Length = 1465

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 92/418 (22%), Positives = 159/418 (38%), Gaps = 94/418 (22%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K A   V +
Sbjct: 969  FETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-K 1027

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +  Y +  R                              D  V+RL   +    G+ R
Sbjct: 1028 GYERDYGKFYR------------------------------DAEVERL---AAGAAGVKR 1054

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIK 570
                H  GIV+        +P Y DV    PV             T FN   I++  ++K
Sbjct: 1055 TTGQHPGGIVV--------IPNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLK 1105

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKG 616
             D LG    T+++K  D        +D   IP DD     L               T  G
Sbjct: 1106 LDILGHDDPTMIRKLQDLSG-----IDPITIPADDPGVMALFSGTEVLGVTPEQIGTPTG 1160

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
             LGI +  ++ +R  +    P    +++ L  L       ++ + N +   KE I ++  
Sbjct: 1161 MLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHG---TDVWLGNAQDLIKEGIATLKT 1217

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I         +++Y    +  A L    + +  + +R+ +  KI EE   ++  +I   
Sbjct: 1218 VIGC----RDDIMVY----LMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIDAM 1266

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             +N +         E   K   Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1267 RENNVPDWY----IESCGKIK-YMFPKAHAAAYVLMALRVAYFKVHHPIMYYCAYFSI 1319


>gi|327541636|gb|EGF28163.1| protein containing Polymerase and histidinol phosphatase,
          N-terminal domain [Rhodopirellula baltica WH47]
          Length = 108

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 2  TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          T+  E  P FVHL  HS YSLL+GA  +  ++ +       A+A+TD  NL  ALEF +K
Sbjct: 16 TEIPETKP-FVHLHCHSHYSLLDGAGDIGKLVKRAVDHGMNALALTDHGNLHGALEFYRK 74

Query: 62 ACAAGIQPIIG 72
          A  AGI PIIG
Sbjct: 75 AKDAGINPIIG 85


>gi|160893350|ref|ZP_02074137.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50]
 gi|156865042|gb|EDO58473.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50]
          Length = 1514

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 179/882 (20%), Positives = 322/882 (36%), Gaps = 202/882 (22%)

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-----GDRLYVNLQRH------- 189
            EGLI+ +   +G + RA   ++      RL+ F         G+  ++  ++        
Sbjct: 691  EGLILGSACEAGELFRAVVDDAPDEEIARLVNFFDYLEIQPIGNNEFMTRKKENPCTIED 750

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPR 247
             + Y++    ++V+L      P+VAT +  FL  ED     ++M +      V+Q     
Sbjct: 751  LQNYNK----RIVELGRLFNKPVVATCDVHFLDPEDSIYRAIIMKSKGFEDAVNQ----- 801

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  Y +   EM++ F  L         + NT  IA    ++  V     P  IE   +
Sbjct: 802  --PPLYFRTTEEMLAEFEYLGSEKAREVVITNTNLIADMVEYMDPVRPDKAPPIIENSDE 859

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             +     N    KA       L +  +          +RL+ EL+ I    F+  ++I  
Sbjct: 860  TLT----NICYEKAHKIYGPDLPEVVV----------ERLERELHSIISNGFAVMYIIAQ 905

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------------ 403
              +  +  +   VG  RGS   S  A    IT+++PL    +                  
Sbjct: 906  KLVWDSNDHGYLVG-SRGSVGSSFVATMAGITEVNPLSAHYICPECHFVDFDSELVKSYS 964

Query: 404  ---------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                       FE FL       PD D++F  + +     Y + 
Sbjct: 965  GMSGCDMPDRDCPRCGHPLIKEGHDIPFETFLGFKGDKEPDIDLNFSGEYQSCAHAYTEV 1024

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G  +  +  T  ++  K A           Y  V    K +  D A      A+ D +
Sbjct: 1025 LFGKGKAFRAGTVTTVADKTA-----------YGYVYNYFKDLAKDEAR-AEATAMGDLT 1072

Query: 497  RFREARLADPS---VDRLLEISQ---KLEGLYRHASTHAAGIVIGDR--PLSQLVPMYR- 547
            +    +  D       R  E+ +      G+ R    H  G+++  R   +    P+ + 
Sbjct: 1073 QKEIEKYVDEKAIVTKRSCEMERLAIGCTGVKRSTGQHPGGMIVLPRHEEIYSFTPIQKP 1132

Query: 548  --DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
              D+ +D+  + F    I+   L+K D LG    T++++  D        +D + I  DD
Sbjct: 1133 ANDMTTDVVTSHFEYHSIDH-NLLKLDILGHDDPTMIRRLEDLTG-----LDATTIRLDD 1186

Query: 606  -------HETYHLLTTK--------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                   H T  L  T         G+LG+ +  +    Q L    P    D++ +  L 
Sbjct: 1187 PDVMALFHGTESLHITPEDINGIPLGSLGVPEFGTDFAMQMLIDANPQNFSDLVRIAGLA 1246

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
                +          N +E I S    I   +     +++Y   +     L SG +    
Sbjct: 1247 HGTDV-------WLGNAQELIKSGQCTISTAICCRDDIMVYLIHM----GLESGTAFQIM 1295

Query: 711  DVLRR---AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            + +R+   A GK  K E  K+  +       +G+      + +    +   Y F K+HAA
Sbjct: 1296 ENVRKGNVAKGKCAKWEEWKEDMK------AHGVP-----DWYIWSCQKIKYMFPKAHAA 1344

Query: 768  AYAVISYQTAWMKTHYPVEFLAA-------SMTLEM---------------DNVEKIKKF 805
            AY +++++ A+ K +YP+++ AA       + + EM                +++K K+ 
Sbjct: 1345 AYVMMAWRIAYFKVNYPLQYYAAFFSIRASAFSYEMMCFGKEKVLYHINMIQSIDKNKRT 1404

Query: 806  CQD--------------ARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +D              AR F  + MP  +     + F+V D +I  SLA+I+G+G   A
Sbjct: 1405 AKDEDKLKDLKLVLEMYARGF--EFMPIDIYVADDIRFQVIDGKIMPSLASIEGMGEKAA 1462

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            + + +A+    F S ED  +     K+ +  ++ L   G LD
Sbjct: 1463 KQLKDAACKGRFISKEDLQAH---SKIGKSAIDKLSELGILD 1501


>gi|325989695|ref|YP_004249394.1| DNA polymerase III polC-type [Mycoplasma suis KI3806]
 gi|323574780|emb|CBZ40440.1| DNA polymerase III, polC-type [Mycoplasma suis]
          Length = 1438

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 136/644 (21%), Positives = 223/644 (34%), Gaps = 190/644 (29%)

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            FLS  + E  D+     +    S      V+PD ++ N+SE+      +P ALEN  E  
Sbjct: 773  FLSLSEKEKEDLFFTYRYELANS------VSPDIFV-NKSELA--IPKIPGALENIKEY- 822

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                    +H  +  ++ +K    IQ     EL              G +  GY +  + 
Sbjct: 823  --------IHRKLTAKYGKKLDKQIQATINREL-------------TGIVENGYESVYWC 861

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
              L     ++ R K  G+                 VG  RGS   S  A+AL I+D++PL
Sbjct: 862  AHL-----LVQRSKSEGFL----------------VG-SRGSVGSSFLAHALEISDVNPL 899

Query: 399  ---------RFSLL-------------------------------FERFLNPDRMSMPDF 418
                      + L+                               FE FL  +R  +PD 
Sbjct: 900  PPHYYCSQCSYFLMCTNFRESGFDLETRRCPQCASELSSDGQNIPFETFLGLERNKIPDI 959

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F    + +   +++  +G E   +  T  ++  K +                     
Sbjct: 960  DLNFSGQYQQKAHNFLRELFGKEHTFRAGTISAIAEKTSF-------------------- 999

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                        A+A +  F +    D +   L  +S +L  + R    H  GI++  R 
Sbjct: 1000 ------------ALAKN--FLQDNQIDFNKGHLHWLSYRLTDVKRTTGQHPGGIIVIPRG 1045

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIE--------KAGLIKFDFLGLKTLTLLQKSLDFLA 590
             S    +Y     + P      +W+         K  L KFD LG    T+L    +F  
Sbjct: 1046 ES----IYNYTPVNFPANDIESEWLTTHFDKDTFKDSLFKFDILGQDDPTILALLSNFTG 1101

Query: 591  QRGVKVDLSLIPFDDHETYHLLT-----------------TKGTLGIFQLESSGMRQALE 633
                 VDL  IPF +     + +                   GTLG+ +  +   R+ ++
Sbjct: 1102 -----VDLEKIPFKNERLLKMFSDISVLEIPQNKLELLGEVVGTLGLPEFGTEKTREIMK 1156

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
                 C   I     L R   I +    N  KN  EK++S   L          VI  ++
Sbjct: 1157 A----CRSKIKHFSDLIRISGISH--GKNVWKNNIEKLISSQKL------SLNEVITCRD 1204

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
             +M        Y L +   ++ A   KI E +     R   G     +       + E  
Sbjct: 1205 DIM-------NYLLEKKIDIQNAF--KITESV-----RRGGGIPPENLPLLRKAGVPEWY 1250

Query: 754  AKFAD---YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             + A+   Y F K+HA AY ++ ++ A+ K  YPV+F AA +T+
Sbjct: 1251 IECANKITYIFPKAHATAYVLMCWKIAYFKLEYPVDFYAAYLTI 1294


>gi|325973260|ref|YP_004250324.1| DNA polymerase III PolC [Mycoplasma suis str. Illinois]
 gi|323651862|gb|ADX97944.1| DNA polymerase III, PolC [Mycoplasma suis str. Illinois]
          Length = 1438

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 136/644 (21%), Positives = 223/644 (34%), Gaps = 190/644 (29%)

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            FLS  + E  D+     +    S      V+PD ++ N+SE+      +P ALEN  E  
Sbjct: 773  FLSLSEKEKEDLFFTYRYELANS------VSPDIFV-NKSELA--IPKIPGALENIKEY- 822

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                    +H  +  ++ +K    IQ     EL              G +  GY +  + 
Sbjct: 823  --------IHRKLTAKYGKKLDKQIQATINREL-------------TGIVENGYESVYWC 861

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
              L     ++ R K  G+                 VG  RGS   S  A+AL I+D++PL
Sbjct: 862  AHL-----LVQRSKSEGFL----------------VG-SRGSVGSSFLAHALEISDVNPL 899

Query: 399  ---------RFSLL-------------------------------FERFLNPDRMSMPDF 418
                      + L+                               FE FL  +R  +PD 
Sbjct: 900  PPHYYCSQCSYFLMCTNFRESGFDLETRRCPQCASELSSDGQNIPFETFLGLERNKIPDI 959

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F    + +   +++  +G E   +  T  ++  K +                     
Sbjct: 960  DLNFSGQYQQKAHNFLRELFGKEHTFRAGTISAIAEKTSF-------------------- 999

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                        A+A +  F +    D +   L  +S +L  + R    H  GI++  R 
Sbjct: 1000 ------------ALAKN--FLQDNQIDFNKGHLHWLSYRLTDVKRTTGQHPGGIIVIPRG 1045

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIE--------KAGLIKFDFLGLKTLTLLQKSLDFLA 590
             S    +Y     + P      +W+         K  L KFD LG    T+L    +F  
Sbjct: 1046 ES----IYNYTPVNFPANDIESEWLTTHFDKDTFKDSLFKFDILGQDDPTILALLSNFTG 1101

Query: 591  QRGVKVDLSLIPFDDHETYHLLT-----------------TKGTLGIFQLESSGMRQALE 633
                 VDL  IPF +     + +                   GTLG+ +  +   R+ ++
Sbjct: 1102 -----VDLEKIPFKNERLLKMFSDISVLEIPQNKLELLGEVVGTLGLPEFGTEKTREIMK 1156

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
                 C   I     L R   I +    N  KN  EK++S   L          VI  ++
Sbjct: 1157 A----CRSKIKHFSDLIRISGISH--GKNVWKNNIEKLISSQKL------SLNEVITCRD 1204

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
             +M        Y L +   ++ A   KI E +     R   G     +       + E  
Sbjct: 1205 DIM-------NYLLEKKIDIQNAF--KITESV-----RRGGGIPPENLPLLRKAGVPEWY 1250

Query: 754  AKFAD---YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             + A+   Y F K+HA AY ++ ++ A+ K  YPV+F AA +T+
Sbjct: 1251 IECANKITYIFPKAHATAYVLMCWKIAYFKLEYPVDFYAAYLTI 1294


>gi|30171791|gb|AAP20774.1| DNA polymerase III alpha subunit [Peanut witches'-broom phytoplasma]
          Length = 1492

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 120/541 (22%), Positives = 200/541 (36%), Gaps = 120/541 (22%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D    PD D++F  D ++++  Y++   G   V +    G++Q  A     G 
Sbjct: 1001 FETFLGFDGNKKPDIDLNFSGDYQNQIHNYLRELLGENCVFRA---GTIQTVAKQNAYGY 1057

Query: 464  ALQ-MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                M   Q+                   I D+ R R   +              +EG+ 
Sbjct: 1058 IKSFMEEKQI------------------IIRDNERDRRVIM--------------IEGVK 1085

Query: 523  RHASTHAAGIVIGDRPLS--QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H  GIVI    LS   + P+     DV S+   T F+   +EK  L K D LG  
Sbjct: 1086 RSTGQHPGGIVIIPSGLSIYDVTPIQFPANDVSSEWKTTHFDYHALEK-NLFKLDILGHD 1144

Query: 578  TLTLLQKSLDFLAQRGVKVDLSL---IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
              TL++  +D + +   +   S    IP DD+  Y +   K        E     QA+  
Sbjct: 1145 DPTLIKFLMDDVLKNPSEFPFSRFQDIPVDDNLVYEIFANKEDEIFANKEECKTSQAIPE 1204

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY--- 691
                 + +++  + L                  KEK  +   L+  +   + G  ++   
Sbjct: 1205 FGTPFVRNMLKEIYL------------------KEKKFNFSTLV-KVSGLSHGTGVWSGN 1245

Query: 692  -QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG---------- 740
             Q+Q+     +    +  + D+L   + K +K+ +  +    +    +N           
Sbjct: 1246 AQDQLEDNKSIFDLITCRD-DILNYLISKGLKKLISFEIMELVRKGKQNNDRQKWSALSK 1304

Query: 741  ISKTIAVN--IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF----------- 787
            I +   VN    E L K   Y F K HAAAY +++ + AW K H P+ F           
Sbjct: 1305 IMREHNVNDWYIESLQKIQ-YLFPKPHAAAYVLMALRIAWFKVHAPLLFYKGYFSTRVSQ 1363

Query: 788  ----------------LAASMTLEMDNVEKIK----KFCQDARQFNIQIMPPSVNTPCVD 827
                            L  S   EM +V+K K    K  ++ +      +P  +N    +
Sbjct: 1364 FDYENMMLTTDKIAQILKKSNEKEMTSVQKKKLHTLKIAKEMKDRGYNFLPIDLNKSEAN 1423

Query: 828  F---KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
                +V  N +      I G+G   A +I++A  +K F + +DF  RV   KLN+ +L+ 
Sbjct: 1424 LFVMEVSSNSLIMPFITIDGLGQVGANNIVKARGEKLF-TQQDFEKRV---KLNKTILKK 1479

Query: 885  L 885
             
Sbjct: 1480 F 1480


>gi|290794221|gb|ADD64432.1| DNA polymerase III [Streptococcus salivarius]
          Length = 165

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 19/172 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P+V  +   +    D     +L A++ +  +S+     + P +  L +  EM S +SD
Sbjct: 12  DYPVVPLHTVCYFENADRSTIQMLHAISQNVSLSEAS---ICPMNQLLFSPQEMESAYSD 68

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           +PEAL N  ++    ++        LPRF      +      ++LR  A +GLE +    
Sbjct: 69  IPEALNNLEQLVSDITYQFDTDLK-LPRF------NRDMPAVDQLRQLAQSGLESKKLTS 121

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
           A+        Y++RLD EL++I +M F  YFLIV D +++ +     +G GR
Sbjct: 122 AV--------YQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGYYMGMGR 165


>gi|307243534|ref|ZP_07525682.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Peptostreptococcus stomatis DSM 17678]
 gi|306493090|gb|EFM65095.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Peptostreptococcus stomatis DSM 17678]
          Length = 1202

 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 129/659 (19%), Positives = 241/659 (36%), Gaps = 181/659 (27%)

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL+ ELN I    ++  ++I    +  +  +   VG  RGS   S+ A    IT+++PL
Sbjct: 609  KRLNRELNSIIGNGYAVMYIIANKLVAKSLSDGYLVG-SRGSVGSSLAATMSDITEVNPL 667

Query: 399  -----------RFS--------------------------------LLFERFLNPDRMSM 415
                       ++S                                + FE FL  +    
Sbjct: 668  PAHYICPNEACKYSEFFGIGEYGSGIDLPDKKCPKCGSQLIKEGQDIPFEVFLGFEGDKE 727

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F    +  + +Y +  +G     +  T G++Q K A           Y  V   
Sbjct: 728  PDIDLNFSGTYQPTIHKYTEELFGQGYTFRAGTIGTVQEKTA-----------YGYV--- 773

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI- 534
                                  F +    D +   +  +++    + R +  H  G+++ 
Sbjct: 774  --------------------RNFSKENHLDLTNAEMTWLTKGCTEVKRTSGQHPGGVMVI 813

Query: 535  -GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
              +  +    P+     D  S +  T F+   I    ++K D LG    T+++   D   
Sbjct: 814  PHNMNVHDFTPVQYPANDKSSGVITTHFDYHSIS-GRILKLDILGHDGPTIIRMLEDM-- 870

Query: 591  QRGVKVDLSLIPFDDHETYHLLT---------------TKGTLGIFQLESSGMRQALEGM 635
              G+K+  + IP DD  T  L T               T G++ I +  +   RQ L   
Sbjct: 871  -TGIKI--TDIPLDDPATMSLFTSTKALGIEPEDIDGTTVGSMAIPEFGTKFTRQMLVDT 927

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            +P    +++ +  L       ++ + N +   +  +V         LKE   VI  ++ +
Sbjct: 928  KPTTFAELVRIAGLSHG---TDVWLNNAQDLVRANVVG--------LKE---VISTRDDI 973

Query: 696  MQIAQLLS-----GYSLSEADVLRRAMGKKIKEEM--DKQKERFISGASKNGISKTIAVN 748
            M     +       +++ E+    + + KK +E M  ++  + +IS   K          
Sbjct: 974  MNYLIFMGLKPKRAFTIMESVRKGKGLTKKDEEAMLENEVPDWYISSCKK---------- 1023

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN---------V 799
                      Y F K+HA AY + S++ A+ K +YP  F A   T ++D+         +
Sbjct: 1024 --------IKYMFPKAHAVAYVMTSFRIAYCKVNYPEAFYATYFTTKVDDFDIELITSGI 1075

Query: 800  EKIKKFCQDARQF------------------------NIQIMPPSV-NTPCVDFKV-GDN 833
            +K+K      ++                          I+ M   +  +   DFK+ G  
Sbjct: 1076 DKVKARLGQIKELGTKATTKENAQYTILEVVVEMYARGIEFMHIDLYESDARDFKIYGPK 1135

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +I   + +++G+G   A  ++EA  D  F S ED   R    KL++ V+E L   G+L+
Sbjct: 1136 KILPPMISLQGMGENAALSVVEARKDGKFLSKEDLIKRT---KLSKTVVEKLSNHGSLE 1191


>gi|153954051|ref|YP_001394816.1| DNA polymerase III PolC [Clostridium kluyveri DSM 555]
 gi|219854664|ref|YP_002471786.1| hypothetical protein CKR_1321 [Clostridium kluyveri NBRC 12016]
 gi|146346932|gb|EDK33468.1| PolC [Clostridium kluyveri DSM 555]
 gi|219568388|dbj|BAH06372.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1439

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 178/915 (19%), Positives = 334/915 (36%), Gaps = 227/915 (24%)

Query: 99   IVLLVSTAEGYQRLIELVSRM---YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            +++LV    G + L ++VS+    Y   + +    I +        EGLI+     +G +
Sbjct: 617  LIILVKNQIGLKNLYKMVSKSNLNYFFKKPRMPKSIIIKH-----REGLIIGGACEAGQV 671

Query: 156  DRAFFFNSSQVAEKRLLTF----------KKLFGDR--LYVNLQRHRGYDRYRESQVVQL 203
             R      S    K +L F            LF  R  L  ++++ +  +R    ++  L
Sbjct: 672  YREVLGGKSDSELKDILDFYDYLEIQPVENNLFMVRNGLVKDIEQLKDINR----RICDL 727

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
               + +P++AT +  F+  +D     ++MA   +S   +Q       P  Y +   EM+ 
Sbjct: 728  GVINNIPVIATGDVHFMDPKDEIFRRIIMAGQGYSDADNQ-------PPLYFRTTEEMLF 780

Query: 263  IFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F  L E       +ENT +IA     +  +     P  IE          E E++N  +
Sbjct: 781  EFEYLGEKKAREVVIENTNKIADMIEEVKPIPDETFPPKIEGA--------EEEIKNMTL 832

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
              +       +I      +  ++RLD ELN I    ++  +LI    ++ +  +   VG 
Sbjct: 833  KKVH------SIYGDNLPEIVQERLDKELNSIINNGYAVLYLIAQKLVEKSYNDGYLVG- 885

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFS-------------------------- 401
             RGS   S  A    IT+++ L         ++S                          
Sbjct: 886  SRGSVGSSFVATMSNITEVNGLPPHYVCPNCKYSEFFTDGSIGSGADLPDKSCPDCGEKL 945

Query: 402  ------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL       PD D++F  + +  V +Y +  +G + V +  T G++  K
Sbjct: 946  MKDGHDIPFETFLGFAGDKEPDIDLNFSGEYQPVVHKYTEVLFGKDHVFRAGTIGTIAEK 1005

Query: 456  AALRDVGRALQ-----MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
             A   V + +      +P ++++RL K                                 
Sbjct: 1006 TAYGYVKKYIAEKNMVLPQAEIERLTK--------------------------------- 1032

Query: 511  LLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEK 565
                     G+ R    H  G+++   D  +    P+     D  +++  T F+   I  
Sbjct: 1033 ------GCTGIKRTTGQHPGGVMVVPDDNDIHNFTPVQHPADDNSTEIITTHFDYHSIS- 1085

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK---------- 615
              L+K D LG    T+L+     + Q    +D   IP  + +   L T+           
Sbjct: 1086 GRLLKLDILGHDDPTVLR-----MLQDLTGLDPKTIPLGEPKVMSLFTSPEALGVSEKEI 1140

Query: 616  ----GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                GT G+ +  +  +RQ L    P    D++ +  L       ++ + N +   KE  
Sbjct: 1141 DCSVGTYGLPEFGTKFVRQMLMDTHPKTFADLVRISGLSHG---TDVWLNNAQYYIKEGY 1197

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK-QKE 730
             ++   I         ++IY  Q      L    S +  +++R+  GK +KEE +   +E
Sbjct: 1198 TTLQDCIAC----RDDIMIYLIQ----KGLPPKTSFTIMEMVRK--GKGLKEEHEAIMRE 1247

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK---------- 780
              +              N +    K   Y F K HA AY +++ + A+ K          
Sbjct: 1248 HTVP-------------NWYIESCKKIKYMFPKGHAVAYVMMAVRIAYFKVYYPKAYYAA 1294

Query: 781  --THYPVEFLA-------ASMTLEMDNVEK--------------IKKFCQDARQFNIQIM 817
              T    EF A        ++  +MD +                I + C +  +  I+ +
Sbjct: 1295 YFTVRANEFDADIVVQGEGAIKKKMDELYSQGNNLTQKDKGLLTILELCYEMNKRGIKFL 1354

Query: 818  PPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
               +  +  + F + ++ I   + ++ G+G   A++I++A  +  F S ED   R    K
Sbjct: 1355 KVDLYKSHAIKFLIEESGIRVPMNSLAGLGENAAKNIVKAREEGEFISKEDLRIRA---K 1411

Query: 877  LNRRVLESLVFAGAL 891
            +++ V+++L   G L
Sbjct: 1412 VSKTVIDTLNNHGCL 1426


>gi|213580324|ref|ZP_03362150.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-0664]
          Length = 89

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%)

Query: 9  PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4  PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69 PIIGCQLDI 77
          PI+G   ++
Sbjct: 64 PIVGADFNV 72


>gi|213029070|ref|ZP_03343517.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
          Length = 73

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%)

Query: 9  PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4  PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query: 69 PIIGCQLDI 77
          PI+G   ++
Sbjct: 64 PIVGADFNV 72


>gi|213417925|ref|ZP_03351016.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 102

 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 17/110 (15%)

Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A    K       ++F
Sbjct: 1   MCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF 60

Query: 928 AHEKGTFSDKITLEKFSVENS---------SVRFENEQRVLGFYFSGHPL 968
               G  ++    E   +E S          V  + E+  LG Y +GHP+
Sbjct: 61  ----GVLAE----EPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPI 102


>gi|167756906|ref|ZP_02429033.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402]
 gi|167703081|gb|EDS17660.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402]
          Length = 1445

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 161/797 (20%), Positives = 281/797 (35%), Gaps = 195/797 (24%)

Query: 211  LVATNNSLFLSEEDYEAHDVLMA-----VAHST--VVSQKDRPRVTPDHYLKNRSEMVSI 263
            +VAT +  FL   D    DV ++     + H    +  +++     P  YL+  +EM+  
Sbjct: 718  IVATGDVHFLEVRDKIFRDVFISNPTIGIGHRAHPLCDRRNPKAKNPCQYLRTTNEMLEG 777

Query: 264  FSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
            +  LP+       + NT +IA     I  VH  +    I+   ++++K            
Sbjct: 778  YPYLPQDEVFEYVVTNTNKIADMVEEIKPVHDKLFTPKIDGADENLKK------------ 825

Query: 318  GLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
                 +      K Y     Q   +RL+ EL+ I +  F   + I    ++ +  +   V
Sbjct: 826  -----ICYDTAHKTYGNPLPQIVEKRLEKELSNIIKHGFGVIYYISHLLVKKSNDDGYLV 880

Query: 375  GPGRGSGAGSVTAYALTITDIDPL------------------------------------ 398
            G  RGS   S  A    IT+++PL                                    
Sbjct: 881  G-SRGSVGSSFVATMSGITEVNPLPPHYVCLHCSHSEFLEEGIVADGYDLEDKVCPKCGK 939

Query: 399  -----RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
                   ++ FE FL  +   +PD D++F  + +     + +  +G + V +  T  ++ 
Sbjct: 940  IMKGEGHNIPFETFLGFNADKVPDIDLNFSGEYQANAHAFTKEIFGEDHVFRAGTISTVA 999

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             K A           Y       +L+               D   R A L          
Sbjct: 1000 EKTA-----------YGYAKGYAELM-------------GTDQTIRSAELE--------R 1027

Query: 514  ISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGL 568
            I+    G+ R    H  GI++  GD  +    P      D+ +    T F+   I    +
Sbjct: 1028 IAAGCGGVKRTTGQHPGGIIVIPGDMDVFDFTPYQFPADDLNAAWKTTHFDFHAIHD-NV 1086

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            +KFD LG    T+ +    FL Q    VD   IP +D +   L T+   LG   L+  G 
Sbjct: 1087 LKFDILGHVDPTVTR----FL-QDLTGVDPKDIPTNDKKVMSLFTSSEALGC-NLDFIGC 1140

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQG 687
            +    G+       +  ++   +P   +++V+ +   +G +  + +   LI         
Sbjct: 1141 KNGALGLPEFGTSFVRGMLDQTQPKTFNDLVIISGLSHGTDVYLGNAETLIKSGTCTLSE 1200

Query: 688  VIIYQEQVMQIAQLLSGYSLSEA----DVLRRAMG-----KKIKEEMDKQ---KERFISG 735
            VI  ++ +M +  +  G    +A    + +R+        +K  EE+ K+    + +I  
Sbjct: 1201 VIGCRDDIM-VYLIEKGLPNKDAFDIMECVRKGKSPVVFPEKKYEELMKEYNVPQWYIDS 1259

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              K                    Y F K+HAAAY + + + AW K +YP E+ A   T  
Sbjct: 1260 CKK------------------IKYMFPKAHAAAYVLSAIRVAWWKLYYPREYYAVYFTTR 1301

Query: 796  MDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVD-----------------FKVGDN 833
             D  + I+   Q      AR+  I  +    ++   D                 F     
Sbjct: 1302 CDFYD-IETLVQGKDAIMARRAEITQLRAERSSSNKDEGLWDIFEIALEMIERGFHFNPV 1360

Query: 834  RIYYSLA------------------AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
             + YS A                  AI  +G + A+ +++A AD PF S ED   R    
Sbjct: 1361 SLEYSQASKFILDPNDEKGLIPPFSAIDALGESVAKTVVDARADGPFLSKEDVIKRT--- 1417

Query: 876  KLNRRVLESLVFAGALD 892
            KLN   +++L   G  +
Sbjct: 1418 KLNNSHIKTLSKMGVFN 1434



 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 35/66 (53%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS  S ++G  ++   ++ +A+    AIA+TD  N+ S  E    A  AGI+ I 
Sbjct: 322 VELHTHSKMSAMDGVGTITQYINAVASWGHKAIAVTDHGNVQSFPEAQMAAGKAGIKMIY 381

Query: 72  GCQLDI 77
           G + ++
Sbjct: 382 GVEFNM 387


>gi|237734614|ref|ZP_04565095.1| DNA-directed DNA polymerase [Mollicutes bacterium D7]
 gi|229382434|gb|EEO32525.1| DNA-directed DNA polymerase [Coprobacillus sp. D7]
          Length = 1440

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 161/797 (20%), Positives = 281/797 (35%), Gaps = 195/797 (24%)

Query: 211  LVATNNSLFLSEEDYEAHDVLMA-----VAHST--VVSQKDRPRVTPDHYLKNRSEMVSI 263
            +VAT +  FL   D    DV ++     + H    +  +++     P  YL+  +EM+  
Sbjct: 713  IVATGDVHFLEVRDKIFRDVFISNPTIGIGHRAHPLCDRRNPKAKNPCQYLRTTNEMLEG 772

Query: 264  FSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
            +  LP+       + NT +IA     I  VH  +    I+   ++++K            
Sbjct: 773  YPYLPQDEVFEYVVTNTNKIADMVEEIKPVHDKLFTPKIDGADENLKK------------ 820

Query: 318  GLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
                 +      K Y     Q   +RL+ EL+ I +  F   + I    ++ +  +   V
Sbjct: 821  -----ICYDTAHKTYGNPLPQIVEKRLEKELSNIIKHGFGVIYYISHLLVKKSNDDGYLV 875

Query: 375  GPGRGSGAGSVTAYALTITDIDPL------------------------------------ 398
            G  RGS   S  A    IT+++PL                                    
Sbjct: 876  G-SRGSVGSSFVATMSGITEVNPLPPHYVCLHCSHSEFLEEGIVADGYDLEDKVCPKCGK 934

Query: 399  -----RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
                   ++ FE FL  +   +PD D++F  + +     + +  +G + V +  T  ++ 
Sbjct: 935  IMKGEGHNIPFETFLGFNADKVPDIDLNFSGEYQANAHAFTKEIFGEDHVFRAGTISTVA 994

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             K A           Y       +L+               D   R A L          
Sbjct: 995  EKTA-----------YGYAKGYAELM-------------GTDQTIRSAELE--------R 1022

Query: 514  ISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGL 568
            I+    G+ R    H  GI++  GD  +    P      D+ +    T F+   I    +
Sbjct: 1023 IAAGCGGVKRTTGQHPGGIIVIPGDMDVFDFTPYQFPADDLNAAWKTTHFDFHAIHD-NV 1081

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            +KFD LG    T+ +    FL Q    VD   IP +D +   L T+   LG   L+  G 
Sbjct: 1082 LKFDILGHVDPTVTR----FL-QDLTGVDPKDIPTNDKKVMSLFTSSEALGC-NLDFIGC 1135

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQG 687
            +    G+       +  ++   +P   +++V+ +   +G +  + +   LI         
Sbjct: 1136 KNGALGLPEFGTSFVRGMLDQTQPKTFNDLVIISGLSHGTDVYLGNAETLIKSGTCTLSE 1195

Query: 688  VIIYQEQVMQIAQLLSGYSLSEA----DVLRRAMG-----KKIKEEMDKQ---KERFISG 735
            VI  ++ +M +  +  G    +A    + +R+        +K  EE+ K+    + +I  
Sbjct: 1196 VIGCRDDIM-VYLIEKGLPNKDAFDIMECVRKGKSPVVFPEKKYEELMKEYNVPQWYIDS 1254

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              K                    Y F K+HAAAY + + + AW K +YP E+ A   T  
Sbjct: 1255 CKK------------------IKYMFPKAHAAAYVLSAIRVAWWKLYYPREYYAVYFTTR 1296

Query: 796  MDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVD-----------------FKVGDN 833
             D  + I+   Q      AR+  I  +    ++   D                 F     
Sbjct: 1297 CDFYD-IETLVQGKDAIMARRAEITQLRAERSSSNKDEGLWDIFEIALEMIERGFHFNPV 1355

Query: 834  RIYYSLA------------------AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
             + YS A                  AI  +G + A+ +++A AD PF S ED   R    
Sbjct: 1356 SLEYSQASKFILDPNDEKGLIPPFSAIDALGESVAKTVVDARADGPFLSKEDVIKRT--- 1412

Query: 876  KLNRRVLESLVFAGALD 892
            KLN   +++L   G  +
Sbjct: 1413 KLNNSHIKTLSKMGVFN 1429



 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 35/66 (53%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS  S ++G  ++   ++ +A+    AIA+TD  N+ S  E    A  AGI+ I 
Sbjct: 317 VELHTHSKMSAMDGVGTITQYINAVASWGHKAIAVTDHGNVQSFPEAQMAAGKAGIKMIY 376

Query: 72  GCQLDI 77
           G + ++
Sbjct: 377 GVEFNM 382


>gi|81428867|ref|YP_395867.1| DNA polymerase III PolC [Lactobacillus sakei subsp. sakei 23K]
 gi|123564054|sp|Q38W73|DPO3_LACSS RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|78610509|emb|CAI55560.1| DNA-directed DNA polymerase III, polC-type [Lactobacillus sakei
            subsp. sakei 23K]
          Length = 1446

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 182/910 (20%), Positives = 331/910 (36%), Gaps = 225/910 (24%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI---- 155
            VL+  T  G + L +LVS   + +   ++ R+  S L  +  EG+++ +  S+G +    
Sbjct: 619  VLMAQTQAGLKNLFKLVS-ASMTEYYYRTPRLPKSKLDAL-REGILVGSACSNGEVFEAM 676

Query: 156  ---------DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYT 206
                     DRA +++  +V  K +  +  L    L   ++ +R  +    + +V++   
Sbjct: 677  MQKGYNEALDRAKYYDYIEVMPKAV--YAPLLEREL---VRDNRALEEIIRN-LVKVGEK 730

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
               P+VAT ++ +L+ ED     +L+   HS   +        PD + ++  EM++ F  
Sbjct: 731  LNKPVVATGDAHYLNPEDAIYRKILI---HSMGGANPLNRSKLPDVHFRSTDEMLTAFDF 787

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
            L   L   + +A              P+ I  + D+I   ++ +L    +AG E  +   
Sbjct: 788  LGPELAQELVVAN-------------PQKIADQIDEIVPVKD-KLYTPKMAGAEDEIQTL 833

Query: 327  AIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
             + + +        +    RL  EL  I    FS  +LI    +  + K+   VG  RGS
Sbjct: 834  TMNRAHELYGAELPEIVEARLKKELKSIIGNGFSVIYLISQKLVYKSGKDGYLVG-SRGS 892

Query: 381  GAGSVTAYALTITDIDPL----RFS----------------------------------- 401
               S+ A    IT+++PL    R S                                   
Sbjct: 893  VGSSLVATMTGITEVNPLPPHYRCSNCHYSEFFTKGEVGSGYDLADKDCPECGTPLDKDG 952

Query: 402  --LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL      +PD D++F  D +     Y +  +G   V +  T G++  K A  
Sbjct: 953  HDIPFETFLGFHGDKVPDIDLNFSGDYQPVAHNYTKVLFGENNVFRAGTIGTVADKTAYG 1012

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V +A +    Q                          FR A      VDRL + S    
Sbjct: 1013 YV-KAYERDTEQT-------------------------FRGAE-----VDRLAKGST--- 1038

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKA 566
            G+ R    H AGI++        VP Y D+    P+             T F+   I   
Sbjct: 1039 GVKRTTGQHPAGIIV--------VPDYMDIYDFTPIQFPADDQDAAWKTTHFDFHSIHD- 1089

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK----------- 615
             ++K D LG    T+++   D        +D   IP DD     L +             
Sbjct: 1090 NILKLDILGHDDPTMIRMLQDLSG-----IDPKSIPTDDPGVMALFSGTDSLGVTPEQIN 1144

Query: 616  ---GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
               GTLG+ +  +  +R  LE   P    +++ +  L     +          N +E   
Sbjct: 1145 SKMGTLGVPEFGTRFVRGMLEETHPTTFSELLQISGLSHGTDV-------WLGNAEE--- 1194

Query: 673  SIHPLIDPMLKETQGVIIYQEQV-MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
                LI+  +   + VI  ++ + M +       S+S   + R   GK I ++  +Q  R
Sbjct: 1195 ----LINKGVVTLKDVIGCRDNIMMDLIHWGMDDSMSFNIMERVRKGKGIPDDW-QQAMR 1249

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
                     I   + +           Y F K+HA AY +++ + A+ K ++P+ +  A 
Sbjct: 1250 DNENVPDWYIDSCLKIK----------YMFPKAHATAYILMALRIAYFKVYFPIIYYCAY 1299

Query: 792  MTLEMDNVEKI------------------KKFCQDARQFNI--------QIMPPSVNTPC 825
             ++   + + +                  K      ++ N+        + +   +    
Sbjct: 1300 FSVRASDFDLVAMAQGKEGVKARMKEITDKGMEASTKEKNLLTVLEIANECLERGITIKM 1359

Query: 826  VDFKVGDNRIYY---------SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            VD +  D+  +             A+  +G   A+ I+ A  +KPF S ED  +R    K
Sbjct: 1360 VDIEKSDSSDFLIQDDHTLLAPFRAVPSLGDNVAKQIVSAREEKPFLSKEDLSNR---GK 1416

Query: 877  LNRRVLESLV 886
            +++ ++E L 
Sbjct: 1417 VSKTLIEYLT 1426


>gi|58698588|ref|ZP_00373486.1| DNA polymerase III, alpha subunit, form 1, putative [Wolbachia
            endosymbiont of Drosophila ananassae]
 gi|58534884|gb|EAL58985.1| DNA polymerase III, alpha subunit, form 1, putative [Wolbachia
            endosymbiont of Drosophila ananassae]
          Length = 292

 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 10/156 (6%)

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            +N+R LESL+ +GA D    +R QL +S+D +  +A   +++R +    +F         
Sbjct: 22   INKRALESLIKSGAFDSVHKNRKQLYESMDTLIYFANKNKQDRESSQAALFGSLDVLKPK 81

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
               +E F  E    + E+E   LGFY + HPL+ ++ +L K+ I G+      I  N   
Sbjct: 82   LENVEDFDEEE---KLEHELFSLGFYLTNHPLEKFRTLLEKLNI-GF------IGENRTA 131

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              A V+   + +T +  R   +T S+P    E  F+
Sbjct: 132  KTAGVILNARMRTSERGRFVILTLSDPHNVSEIAFY 167


>gi|317495743|ref|ZP_07954108.1| DNA polymerase III [Gemella moribillum M424]
 gi|316914196|gb|EFV35677.1| DNA polymerase III [Gemella moribillum M424]
          Length = 1446

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 180/911 (19%), Positives = 326/911 (35%), Gaps = 211/911 (23%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR--MYLLDQGKQSVRICL 133
            +ID + +LK  +     FP      +LV  A+G + L  LVS      L  GK +  I  
Sbjct: 600  EIDNKIDLKFAHTRSRTFPCS----ILVKNAKGLKDLFRLVSYSCTEYLSSGKPT--IPR 653

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAF--FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
            S L++   + LI    GS    +  F    NS +   + ++ F        Y+ +Q    
Sbjct: 654  SLLEQYRQDLLI----GSGNSENEVFEELLNSKEDKVESIIDFYD------YIEIQPMNH 703

Query: 192  YDRYRESQVVQLAYTHELP----------------LVATNNSLFLSEEDYEAHDVLMAVA 235
            Y+ +  ++  ++A   EL                 +VAT +  +L E  +    +L    
Sbjct: 704  YESFITNE--RIADKTELEIILKKLISLSKKKGKIVVATGDCYYLDEYQHVYRQILRLSV 761

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL------ENTVEIARRCSFILQVHA 289
             +   ++  +P  T         EM+  FS L + L      ENT +I+ +   ++ +  
Sbjct: 762  KNNPGARDIKPMAT----FLTTEEMLEEFSFLDKELREEIVIENTHKISDKIELVVPLKD 817

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY----RQRLDFEL 345
             +    I+   D                  EVR    ++A   + ++      +RL+ EL
Sbjct: 818  KLYTPNIKGAAD------------------EVRNLSYSMAHKIYGEELPEIVEKRLEKEL 859

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------ 399
              I    FS  +LI    ++ +  +   VG  RGS   S+ A  + IT+++PL       
Sbjct: 860  TSIIGNGFSVVYLISHKLVKKSLDDGYLVG-SRGSVGSSLVATMMEITEVNPLAPHYVCP 918

Query: 400  ----------------FSLL-------------------FERFLNPDRMSMPDFDIDFCQ 424
                            F L                    FE FL  +   +PD D++F  
Sbjct: 919  KCKHSEFFLNAEYASGFDLPNKNCPHCDVKMTKDGQDIPFETFLGFNGDKVPDIDLNFSG 978

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + +     + +  +G + V +  T  ++  K A      +    Y + + +         
Sbjct: 979  EYQATAHNFTKEIFGEDYVYRAGTIATVAEKTAY-----SFTRDYYEKNEI--------- 1024

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQL 542
                           E R  D     L  I+   EG  R    H  GI++   D  +   
Sbjct: 1025 ---------------EKRNID-----LERIAAGCEGAKRTTGQHPGGILVVPNDMDIFDF 1064

Query: 543  VPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             P      D  S    T F+   I    ++KFD LG    T+++K  D        +D+S
Sbjct: 1065 TPYQYPADDETSSWRTTHFDFHSIHD-NILKFDILGHDDPTMIRKLQDLSGINPKTIDVS 1123

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
                 D E   + +    LG+ + E         G+       +I ++   +P     +V
Sbjct: 1124 -----DPEVMGIFSGVEALGVTR-EQVNSASGTFGIPEFGTNFVIQMLDDTKPTTYSELV 1177

Query: 660  VYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRR 715
              +   +G +  + +   LI     E + VI  ++ +M     A L  G + +  + +R+
Sbjct: 1178 QISGLSHGTDVWLGNAQELIRNGTCELKDVIGCRDDIMVYLIHAGLEEGLAFTIMESVRK 1237

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
              G           E F +   +N +      +      K   Y F K+HA AY +++ +
Sbjct: 1238 GKG---------LTEDFEAAMKENDVPAWYIDS-----CKKIKYMFPKAHACAYVLMALR 1283

Query: 776  TAWMKTHYPVEFLAASMTLEMDN----------------VEKIKKFCQD----------- 808
             AW K H P+ +  A  ++   +                +E+IK   ++           
Sbjct: 1284 IAWFKVHQPLTYYCAYYSVRASDFDIITVVKGEKSLKAKIEEIKTTDKNELTAKDKDALV 1343

Query: 809  ARQFNIQIMPPSVNTPCVDFK--------VGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
            + +   ++M        VD +        +  N +    + + G+G   A+ I++A  +K
Sbjct: 1344 SYEIANEMMERGFTFSKVDLEKSASHDYIMEGNTLIPPFSIVPGLGDNVAKKIVQARLEK 1403

Query: 861  PFDSLEDFCSR 871
            PF S+EDF  R
Sbjct: 1404 PFLSIEDFSKR 1414


>gi|297181302|gb|ADI17494.1| DNA polymerase III, alpha subunit [uncultured beta
          proteobacterium HF0130_04F21]
          Length = 66

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 42/62 (67%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
          SFVHL++H+ YS+ +  + +  +++K   D+QPAI ITD  N F+ ++F + A   GI+P
Sbjct: 5  SFVHLRLHTEYSISDSIVKIPRVIEKACLDRQPAIGITDLGNTFALMKFYRNARKKGIKP 64

Query: 70 II 71
          I+
Sbjct: 65 IL 66


>gi|256544693|ref|ZP_05472065.1| Gram-positive family DNA polymerase III, alpha subunit [Anaerococcus
            vaginalis ATCC 51170]
 gi|256399582|gb|EEU13187.1| Gram-positive family DNA polymerase III, alpha subunit [Anaerococcus
            vaginalis ATCC 51170]
          Length = 1398

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 172/932 (18%), Positives = 337/932 (36%), Gaps = 237/932 (25%)

Query: 83   LKMTNQGKTPFPTVP----SIVLLVSTAEGYQRLIELVS--RMYLLDQGKQSVRICLSWL 136
            L+  N  KT +P       S ++      G + L +++S  RM   +      +     +
Sbjct: 555  LEKINSIKTKWPLARHENFSSIIFAKNYHGLKNLYKIISESRMKYFNL---EAKTPFDLV 611

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--------KKLFGDRLYVNLQR 188
            +E   EGLI+ +GG  G + +A     ++   +++  F          +F D L     R
Sbjct: 612  KE-NKEGLIIGSGGKDGLLFKAIRDGYAEEKIEKICGFFDFFQIEAMGVFADDLENGAIR 670

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +        ++++L   +   +VAT +  ++ ++DY   ++L           K+    
Sbjct: 671  DKNQIIEINKKIIELGKKYNKLVVATGSVRYMEKKDYVLRNIL---HKGQFFHYKEN--- 724

Query: 249  TPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIE---KE 299
             P +YLK  +EM+  F  L +       ++NT++IA     I+ +     P  IE   K+
Sbjct: 725  NPLYYLKTTNEMLDEFYYLDDQTKMEVVIDNTIKIADSLERIMPIPHETFPPKIEGSDKK 784

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              D   E+   +    +  L                  + RLD EL+ I    ++  ++I
Sbjct: 785  LKDTTYEKAISIYGDPLPDL-----------------VKTRLDKELDSIISNGYAVLYII 827

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------- 399
              + ++ + ++   VG  RGS   S  A    IT+++PL                     
Sbjct: 828  AKELVEKSNEDGYLVG-SRGSVGSSFAATMANITEVNPLAPHYVCPSCKHSEFITDGSVG 886

Query: 400  ---------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
                                   + FE FL  +    PD D++F  + +  + +Y +  +
Sbjct: 887  AGIDLPDKTCPKCGADMNKDGHDIPFEVFLGFEGDKEPDIDLNFAGEYQPTIHKYTEELF 946

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G  +V +  T G+++   A   + + ++                           +D   
Sbjct: 947  GEGKVFRAGTIGTIKDNTAFGYIKKYME--------------------------DNDLNL 980

Query: 499  REARLADPSVDRLLEISQKLEGLY---RHASTHAAGIVI--GDRPLSQLVPMY---RDVR 550
              A           +I +   GL+   R    H  G++I   D+ +    P+     D +
Sbjct: 981  SNA-----------QIRKYQRGLFDVKRTTGQHPGGLMIVPNDKNIYDFSPVQYPADDGK 1029

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
             D+  T F    +    ++K D LG    T+++   D      +K+ +     DD    +
Sbjct: 1030 DDIKTTHFTYNMMHGV-ILKLDLLGHDVPTIIRSLQDLTNTDPLKLQM-----DDENVMN 1083

Query: 611  LLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            + ++               GTLGI +  +S +R  L+   P    ++  +  L       
Sbjct: 1084 IFSSTKPLNIKYDFSNNEIGTLGIPEFGTSFVRGMLKDTFPTKFSEMTRISGLSHGTD-- 1141

Query: 657  NIVVYNNRKN-------GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
              V  NN ++       G ++I+S     D ++     + + +++  QI +         
Sbjct: 1142 --VWLNNAQDLVKSKTAGFDQIISTR---DDIMNSLINLGLDKKKSFQIME--------- 1187

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
                +   GK + EE        ++   +N +      +  ++      Y F K+HA AY
Sbjct: 1188 ----KVRKGKTLSEET-------LAYMKENNVPDWYIDSCLKI-----KYLFPKAHAVAY 1231

Query: 770  AVISYQTAWMKTHYPVEFLAA-------------------SMTLEMDNVEKIKKFCQDAR 810
             ++SY+ A+ K +YP  F A                    S+   ++ + +++K  Q  R
Sbjct: 1232 CLMSYRIAYYKVYYPKAFYATYFSTKLNDFQYSVIVNGLKSIQYALNEINQLEKPTQ--R 1289

Query: 811  QFNIQ-IMPPSVNTPCVDFKVGDNRIYYS----------------LAAIKGVGTTTARHI 853
            + N++ ++  +      D K+    +Y S                L+A+  V    A+ I
Sbjct: 1290 EKNLRSLLEVAEEMAARDIKIKKADLYKSEAVKFILDDDGEILPPLSAVDDVSEAMAKDI 1349

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            +       F S+ED   R     LN+  L SL
Sbjct: 1350 VIEREKAKFISIEDLKKRT---SLNKNALNSL 1378


>gi|326803581|ref|YP_004321399.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus
            urinae ACS-120-V-Col10a]
 gi|326651581|gb|AEA01764.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus
            urinae ACS-120-V-Col10a]
          Length = 1437

 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 178/930 (19%), Positives = 333/930 (35%), Gaps = 257/930 (27%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +L    +G + L +LVS   + D   +  RI  S L+E   E L++ +  S G +  A 
Sbjct: 615  TILAKNQKGLKDLFKLVSASNV-DYFHRVPRIPRSLLKE-HREHLLIGSACSEGEVFTAA 672

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ--------------VVQLAY 205
                 + A+K    F + +    Y+ +Q    Y+    +Q              +V +  
Sbjct: 673  MQKGKETAKK----FAEFYD---YLEIQPKASYEPLLRNQDIINNEALENIINDLVDIGD 725

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
               + +VAT ++ +L+ ED    ++L+    S      +R +  P  + +   EM+  F+
Sbjct: 726  ELGITVVATGDAHYLNPEDKIYREILINSIKS------NRSKYFPRAHFRTTKEMLDDFA 779

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
             L E       + N+  IA    F+  +H                    ++L    + G 
Sbjct: 780  FLGEEKAFELVVTNSNAIADSIEFVEPIH--------------------DKLYTPHIDGA 819

Query: 320  EVRLAQGAIAKGYHAQDYRQRL--------DFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            E  +   A  K +    Y + L        + EL+ I    F+  + I    +  + ++ 
Sbjct: 820  EESIRNDAFTKAHEI--YGENLPELIEERLERELDSIIGNGFAVIYYIAQKLVWKSNEDG 877

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPL--------------------------------- 398
              VG  RGS   S  A  L IT+++PL                                 
Sbjct: 878  YIVG-SRGSVGSSFAATMLGITEVNPLPPHYVCLNCHYSHFYTHGEIGSGFDLEDKDCPE 936

Query: 399  --------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
                       + FE FL  +   +PD D++F  + + +   Y +  +G + V +  T  
Sbjct: 937  CGQPLSKDGHDIPFETFLGFNGDKVPDIDLNFSGEYQAQAHNYTKVLFGEDHVYKAGTIS 996

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            ++  K A   V                 +  D  H ++L+    D               
Sbjct: 997  TVADKTAFGYV-----------------LGYDRDHNLNLRQTEKDF-------------- 1025

Query: 511  LLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEK 565
               +++   G+ R    H  GI++   +  +    P+     +  +D   T F+   I  
Sbjct: 1026 ---LAKGATGVKRTTGQHPGGIIVIPENMDVYDFTPIQYPADEQTADWRTTHFDFHSIHD 1082

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
              ++K D LG    T+++K  D        ++ + IP DD E Y L     +L       
Sbjct: 1083 -NVLKLDCLGHDDPTVIRKLQDLSG-----IEPTDIPMDDPEVYKLFNGTESL------- 1129

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
                    G+ P+ I      + +   G                      P +  ML+ T
Sbjct: 1130 --------GVSPEQIFSKTGTLGIPEFGT---------------------PFVRQMLEAT 1160

Query: 686  QGVIIYQEQVMQIAQLLSGYS--LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
                    +++QI+ L  G    L  A+ L    G ++K+ +   ++  +      G+ K
Sbjct: 1161 HPSTF--AELLQISGLSHGTDVWLGNAETLVSEKGMELKDVI-GCRDDIMMDLIHMGVPK 1217

Query: 744  TIAVNIFELLAK--------------------FAD------YGFNKSHAAAYAVISYQTA 777
            + +  I E + K                    + D      Y F K+HAAAY + + + A
Sbjct: 1218 SDSFQIMEKVRKGKGLSPEHQAIMKEHEVPEWYMDSCQKIKYMFPKAHAAAYVINALRVA 1277

Query: 778  WMKTHYPVEFLAASMTLEM----------------DNVEKIKKFCQD--ARQFNIQIMPP 819
            W K H+P+ +  A +++                  D +++IK    D  A++  +QI+  
Sbjct: 1278 WFKVHHPIWYYCAYLSVRAEDFDLKAMAGGLESNKDRLKEIKAKGNDASAKEKALQIVLE 1337

Query: 820  SVN----------------TPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
             VN                +   DF + G++ +     A+ G+G + A+ +++A  + PF
Sbjct: 1338 LVNEMWERGLKFKMVDLEKSDAKDFVIEGEDTLIAPFRAVSGLGVSVAQQVVKAREESPF 1397

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             S ED   R    K+++ V++ L    AL+
Sbjct: 1398 LSKEDLKIR---GKVSQSVIDHLDECNALN 1424


>gi|320093662|ref|ZP_08025540.1| error-prone DNA polymerase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979385|gb|EFW10869.1| error-prone DNA polymerase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 219

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 10/215 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L  HS+++ L+G      ++         A+A+ D + + SA+  +  A  AG+ 
Sbjct: 6   PRYAELHAHSAFTFLDGTCEPAEMVRAAQGLGLEALAVLDVDGMHSAVRTTMAAREAGLP 65

Query: 69  PIIGCQLDIDMQD------NLKMTNQGKTPFPTVPSIVL--LVSTAEGYQRLIELVSRMY 120
            + G +L ID                G  P    P + L  L ++ +GY  L+  +S   
Sbjct: 66  IVHGSELTIDASSLRPALPGAGGPGWGLRPGAHDPGVRLPVLAASPQGYSALVSAMSDHA 125

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179
           L   G++     L  L     + L+ LTG   GP+ RA   + +  A + L +   LFG 
Sbjct: 126 LSRPGRRDSSHRLDDLSGRARDWLV-LTGSGRGPLRRALRSHGTAGARRVLDSLVDLFGR 184

Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVAT 214
           D + V +QR  G        +  LA T  L LVAT
Sbjct: 185 DAVVVEVQRRAGDGPEEADALAGLARTRGLRLVAT 219


>gi|92111596|gb|ABE73542.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 19/162 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P++      +    D     +L A++ +  +S+     + P +  L +  EM S +SD
Sbjct: 13  DYPVIPLRTVRYFENADRSTIQMLHAISQNVSLSEAS---ICPMNQLLFSPQEMESAYSD 69

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           +PEAL N  ++    ++        LPRF  ++   +     ++LR  A +GLE +   G
Sbjct: 70  IPEALNNLEQLVSDITYQFDTDLK-LPRF-NRDMPAV-----DQLRQLAQSGLETKKLSG 122

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
           A+        Y++RLD EL++I +M F  YFLIV D +++ +
Sbjct: 123 AV--------YQERLDKELSIIHQMGFDDYFLIVWDLLRFGR 156


>gi|227499278|ref|ZP_03929390.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
 gi|227218629|gb|EEI83863.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
          Length = 1358

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 159/800 (19%), Positives = 299/800 (37%), Gaps = 176/800 (22%)

Query: 82   NLKMTNQGKTPFPTVP----SIVLLVSTAEGYQRLIELVS--RM-YLLDQGKQSVRICLS 134
            +L   N+ K+ +P       S  +      G + L +L+S  RM Y  D+ K  + +   
Sbjct: 511  DLSSINKLKSYWPKAKHEYFSATVFAKNKIGLKNLYKLISESRMKYFNDEAKTPLSVLEK 570

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR--------LLTFKKL-----FGDR 181
            +      EGL++ +G      D +  F+  Q    +        L  F ++     F DR
Sbjct: 571  Y-----REGLLLGSGS-----DESMLFSYLQNKRNKKDIDKIRGLFDFYQMAPLGVFNDR 620

Query: 182  LYVNLQRHRGYDRYRESQVVQLAYTHELP--LVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              VN  + R +++ RE     LA+  E     VAT    +L +++Y    +L  + H   
Sbjct: 621  --VNKGKLRDFNQVREINEKILAFAKEDNKLAVATGAVRYLQKDEY----ILRNILHKGQ 674

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
              +         +YL+   EM+  FS L       V I               P+ I   
Sbjct: 675  FFKYHENEAL--YYLRTTKEMMDDFSYLSPIDAEDVVIRN-------------PKKIVDF 719

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKF 353
             +DI+   +     K + G +  L +   AK +        +    RL+ ELN I    +
Sbjct: 720  IEDIRPIPKGTFPPK-IEGSDTELRETCFAKAHSIYGDPLPKIVEDRLNRELNSIISNGY 778

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------- 399
            +  ++I    +  + ++   VG  RGS   S  A    IT+++PL               
Sbjct: 779  AVLYIIAKKLVGKSNQDGYLVG-SRGSVGSSFAATMADITEVNPLSPHYVCPKCKHSEFF 837

Query: 400  ---------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                                        ++ FE FL  +    PD D++F  + +  + +
Sbjct: 838  EDDLLGAGIDYPDKTCPECGTMMKKDGHNIPFEVFLGFEGDKEPDIDLNFAGEYQPTIHK 897

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            Y +  +G  +V +  T G++Q   A   + +     YS+  ++                 
Sbjct: 898  YTEELFGEGKVFRAGTIGAIQDNTAFGYIKK-----YSEDYQI----------------- 935

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---R 547
                +F  A++         +I + L+ + R    H  G+++   D  +  + P+     
Sbjct: 936  ----QFTNAQVR--------KIQRGLKDVKRTTGQHPGGLIVVPDDIEIFDICPIQYPAD 983

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS----LIPF 603
            D R D+  T F    + +  L+K D LG    ++++   D      +++ +     +  F
Sbjct: 984  DGRGDIKTTHFTYNMMHET-LLKLDLLGHDVPSIIRALQDLTGTNPLEITMGDPRVMKIF 1042

Query: 604  DDHETY---HLLTTK--GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
               ET    H  +    GTLGI +  ++ +R  L+   P    ++  +  L       ++
Sbjct: 1043 SSTETLDIKHDFSNNEIGTLGIPEFGTNFVRGMLKDAYPTKFSEMTRISGLSHGT---DV 1099

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             + N +   + KI S   +I     +    +I Q        L    S S  + +R+  G
Sbjct: 1100 WLNNAQDLVRNKIASFDEIISTR-DDIMNALIQQ-------GLDKKKSFSIMEKVRK--G 1149

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K + EE        ++    NG+ +    +  ++      Y F K+HA AY ++SY+ A+
Sbjct: 1150 KSLSEET-------LAYMRDNGVPEWYIESCLKI-----QYLFPKAHAVAYCLMSYRIAY 1197

Query: 779  MKTHYPVEFLAASMTLEMDN 798
             K +YP  F A     ++++
Sbjct: 1198 YKVYYPEAFYATYFNTKIND 1217


>gi|237732880|ref|ZP_04563361.1| DNA polymerase III subunit alpha [Mollicutes bacterium D7]
 gi|229384033|gb|EEO34124.1| DNA polymerase III subunit alpha [Coprobacillus sp. D7]
          Length = 101

 Score = 59.3 bits (142), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 13/107 (12%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL + + YS+L     ++ +++K   +   A+AITD NN+     F +K   AG++PI
Sbjct: 2   FTHLNIKTEYSMLNSIAKIDGLIEKAKRNNMKALAITDINNMHIVYNFEEKCKKAGLKPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
           +G  L +   +N K+             + LL    +GY+++ ++V+
Sbjct: 62  LGVTLVVKYDNNYKL-------------LGLLAKNEQGYKKITKIVT 95


>gi|163787272|ref|ZP_02181719.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium ALC-1]
 gi|159877160|gb|EDP71217.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium ALC-1]
          Length = 336

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 31/203 (15%)

Query: 839  LAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GY 896
            + AIKGVG    + I+E    D  + S+ D   R+D +  N++  E L  AG  DC+   
Sbjct: 1    MGAIKGVGHGAVKTIVEGRKEDGHYKSIFDLAKRIDLRAANKKAFEGLANAGGFDCWPDT 60

Query: 897  SRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGT---------FSDKITL 940
             R Q           L+   KY    ++N  +   ++F                 D  T+
Sbjct: 61   HRAQYFSHDGDGITFLEKAVKYGAKHQENENSAQISMFGAASDVQIAEPIVPPCEDWGTM 120

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM--GIKGYEESVATIRGNNIRLA 998
            EK S          E+ V+G Y SGHPLD +K  ++    G       + ++    +   
Sbjct: 121  EKLS---------REKEVVGIYISGHPLDDFKIEMKTFCNGNIALFNDLNSVLNREVTFG 171

Query: 999  AMVVSKQQKKTRKGSRIGWVTFS 1021
             +V   Q + +++G   GW  F+
Sbjct: 172  GVVTDVQHRVSKQGK--GWALFT 192


>gi|642270|emb|CAA88043.1| DNA polymerase III [Staphylococcus aureus]
          Length = 1415

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 108/463 (23%), Positives = 183/463 (39%), Gaps = 96/463 (20%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 595  NKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFYRTPRIPRSLLDEY-R 652

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNL---QRHRGYDRYR 196
            EGL++ T    G +  A         EK  +   F ++    LY +L   +  R  +   
Sbjct: 653  EGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDLIDRELIRDTETLH 712

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PD 251
            E   +++    T  +P++AT N+ +L E D  A  +L+A       SQ   P  R T P+
Sbjct: 713  EIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIA-------SQPGNPLNRSTLPE 765

Query: 252  HYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
             + +   EM++ F  L E       ++NT E+A R   ++ +   +  PR          
Sbjct: 766  AHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRM--------- 816

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIV 360
             E  NE         E+R    A A+  + +D  Q    RL+ EL  I    F+  +LI 
Sbjct: 817  -EGANE---------EIRELSYANARKLYGEDLPQIVIDRLEKELKSIIGNGFAVIYLIS 866

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 867  QRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGS 925

Query: 399  RFSL-------------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
             F L                    FE+FL      +PD D++F  + +     Y +  +G
Sbjct: 926  GFDLPDKTCETCGAPLIKEGQDIPFEKFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFG 985

Query: 440  HERVAQIITFGSLQAKAALRDV-----GRALQMPYSQVDRLCK 477
             ++V +  T G++  K A   V      + +    +++DRL K
Sbjct: 986  EDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK 1028


>gi|266625640|ref|ZP_06118575.1| DNA polymerase III, alpha chain [Clostridium hathewayi DSM 13479]
 gi|288862456|gb|EFC94754.1| DNA polymerase III, alpha chain [Clostridium hathewayi DSM 13479]
          Length = 567

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 110/535 (20%), Positives = 198/535 (37%), Gaps = 96/535 (17%)

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
           F + FE FL       PD D++F  + + +   Y +  +G  +  +  T G+L  K A  
Sbjct: 75  FDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHDYTEVIFGKGQTFRAGTIGTLADKTAYG 134

Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            V    +  +    R C+                              ++R++   Q   
Sbjct: 135 YVKNYYE-EHGVHKRNCE------------------------------INRIV---QGCV 160

Query: 520 GLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFL 574
           G+ R    H  GI++      +    P+ R   D+ +    T F+   I+   L+K D L
Sbjct: 161 GVRRTTGQHPGGIIVLPHGEEIYSFTPVQRPANDMTTMTVTTHFDYHSIDH-NLLKLDIL 219

Query: 575 GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
           G    T+++   D +    VK     IP D  E   L      LGI   +  G +    G
Sbjct: 220 GHDDPTMIRMLQDLIGFDPVKD----IPLDSREVMSLFQDTSALGITPEDIGGCKLGALG 275

Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE-KIVSIHPLIDPMLKETQGVIIYQE 693
           +     +  + ++   +P    ++V      +G +  + +   LI       Q  I  ++
Sbjct: 276 VPEFGTDFAMQMLIDTQPKYFSDLVRIAGLAHGTDVWLGNAQTLIQEGKATIQTAICTRD 335

Query: 694 QVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            +M       L  G S +  + +R+  GK +K E +   E  IS    +G+      + +
Sbjct: 336 DIMIYLISMGLEEGLSFTIMESVRK--GKGLKPEWE---EEMIS----HGVP-----DWY 381

Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL---------------- 794
               K   Y F K+HAAAY +++++ A+ K  YP+ + AA  ++                
Sbjct: 382 IWSCKKIKYMFPKAHAAAYVMMAWRIAYCKVFYPLAYYAAFFSIRANGFSYELMCQGRDK 441

Query: 795 ----------EMDNVEKIK-------KFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIY 836
                      MD + K +       +  Q+         P  +       F++   ++ 
Sbjct: 442 LEYYLADYKKRMDTLSKKEQDTLRDMRIVQEMYARGYDFTPIDIYQAKARHFQIIGGKLM 501

Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            SL++I G+G   A  +++A  D  F S EDF +R    K    ++  L   G L
Sbjct: 502 PSLSSIDGLGEKAADAVVDAVKDGKFLSKEDFRNRTKVSKTVCDLMADLGLLGEL 556


>gi|313899185|ref|ZP_07832705.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            sp. HGF2]
 gi|312956008|gb|EFR37656.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            sp. HGF2]
          Length = 1448

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 87/412 (21%), Positives = 154/412 (37%), Gaps = 80/412 (19%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV-G 462
            FE FL  +   +PD D++F  D +     Y +  +G + V +  T G++  + A   V G
Sbjct: 951  FETFLGFEGDKVPDIDLNFSGDYQPNAHAYTKEVFGDDHVYRAGTIGTVATQTAFGYVKG 1010

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
               +M                           +   R A++        L +++  EG+ 
Sbjct: 1011 YEEEM-------------------------GIEGSMRNAQV--------LHLAKGCEGVK 1037

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLI 569
            R    H  GI++        +P+  DV    PV             T F    I    ++
Sbjct: 1038 RTTGQHPGGIIV--------IPLDLDVHDFTPVQYPANNPYAEWKTTHFEFHDIHD-NVL 1088

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
            KFD LG    T ++     + +R   +D + IP +D ET  + +    L I     S   
Sbjct: 1089 KFDILGHVDPTAMK-----MLERMSGIDPTTIPMNDPETMSVFSKVDALKI-DTSKSCEE 1142

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGV 688
                G+       +  ++ L RP   D ++  +   +G +  + +   LID      + V
Sbjct: 1143 TGAAGLPEFGTPFVRGILELTRPTTFDELLKISGLSHGTDVWLGNAKDLIDNGTCTLKSV 1202

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK---ERFISGASKNGISKTI 745
            I  ++ +M        Y L +   LR  +   I E + K K   + +I     NG+    
Sbjct: 1203 IGCRDDIMV-------YLLHKG--LRPKLAFTIMESVRKGKGLKDEWIPEMKANGVEDWY 1253

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
              +  ++      Y F K+HA AY +++ + AW K H P  +     ++  D
Sbjct: 1254 IDSCLKI-----KYMFPKAHATAYVMMAIRIAWFKVHRPQVYYCMFFSIRCD 1300


>gi|160915589|ref|ZP_02077800.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991]
 gi|158432709|gb|EDP10998.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991]
          Length = 1447

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 83/402 (20%), Positives = 158/402 (39%), Gaps = 60/402 (14%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  +   +PD D++F  D +     Y +  +G + V +  T G++  + A   V +
Sbjct: 951  FETFLGFEGDKVPDIDLNFSGDYQPTAHAYTKEVFGEDHVYRAGTIGTVATQTAFGYV-K 1009

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              Q                       + +  +   R A++        L +++  EG+ R
Sbjct: 1010 GYQ-----------------------EEMGIEGGMRNAQV--------LRLAKGCEGVKR 1038

Query: 524  HASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                H  GI++   D  +    P+     +  +D   T F    I    ++KFD LG   
Sbjct: 1039 TTGQHPGGIIVIPLDLDVHDFTPVQYPANNPNADWKTTHFEFHDIHD-NVLKFDILGHVD 1097

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
             T ++     + QR   VD   IP +D ET  + +    L I     +  +    G+   
Sbjct: 1098 PTAMR-----MLQRISGVDPVTIPMNDPETMSIFSKVDALKI-DTSKACDKTGAAGLPEF 1151

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQ 697
              + +  ++ L  P   D ++  +   +G +  + +   LID  +   + VI  ++ +M 
Sbjct: 1152 GTKFVRGILELTEPTTFDELLKISGLSHGTDVWLGNAKDLIDQNICTLKSVIGCRDDIM- 1210

Query: 698  IAQLLSGYSLSEADVLRRAM--GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            +  L  G     A  +  ++  GK +++E       +I    K+G+      + +    K
Sbjct: 1211 VYLLHKGLEPKLAFTIMESVRKGKGLRDE-------WIPEMKKHGVE-----DWYIESCK 1258

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
               Y F K+HA AY +++ + AW K H P  +     ++  D
Sbjct: 1259 KIKYMFPKAHATAYVMMAIRIAWFKVHLPQYYYCMFFSIRCD 1300


>gi|256847046|ref|ZP_05552492.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            coleohominis 101-4-CHN]
 gi|256715710|gb|EEU30685.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            coleohominis 101-4-CHN]
          Length = 1448

 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 188/921 (20%), Positives = 333/921 (36%), Gaps = 218/921 (23%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  MT+ G         + LL     G + + +LVS +  +    +  RI  S L+    
Sbjct: 604  NKHMTDNGAYRHARPFHVTLLAKNQAGLKNMYKLVS-LANVKYFYRVPRIPRSVLERY-R 661

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVV 201
            EGL++ +  SSG +  A        A++     K  F D  Y+ +Q    Y    E +V+
Sbjct: 662  EGLLIGSACSSGEVFTAMMQKGYAEAKQ-----KAAFYD--YLEVQPKPNYAPLLEQKVI 714

Query: 202  QLAYTHEL--------------PLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRP 246
               +  E                +VAT ++ +L+ ED     +L+ +   +  +++  RP
Sbjct: 715  SSEHHLESIIKNMIKLGDELGKTVVATGDAHYLNPEDAIYRKILINSQGGANPLNKTKRP 774

Query: 247  RVTPDHYLKNRSEMVSIF----SDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             V    + +   EM+  F    SDL     +ENT +IA       Q  +P+  +      
Sbjct: 775  DV----HFRTTDEMLQEFDFLGSDLAHQIVVENTHKIADEVD---QEISPVEDKLYTPHM 827

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGY 356
                K  E E++++            A AK ++     +    R+  EL+ I +  FS  
Sbjct: 828  ----KGAEQEIQDRT----------WATAKKWYGDPLPKLVYDRVKLELDSIVKNGFSVI 873

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------------ 398
            +LI    +  + K+   VG  RGS   SV A    IT+++PL                  
Sbjct: 874  YLIAQRLVAKSNKDGYLVG-SRGSVGSSVVATLSGITEVNPLPPHYRCPHCQYNHFYTKG 932

Query: 399  -----------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                      + F+ FL      +PD D++F  D +     Y++
Sbjct: 933  EYSSGYDLPDKKCPKCGTLMIKDGHDIPFQTFLGFKGNKVPDIDLNFSGDYQPIAHNYMK 992

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G + V +  T G++  K A           Y  V    K    D            D
Sbjct: 993  VLFGEKNVFRAGTIGTVADKTA-----------YGYV----KAYERDT-----------D 1026

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVR 550
              FR A       DRL   ++   G+ R    H AGI+I   D  +    P+     D  
Sbjct: 1027 QEFRGAE-----EDRL---AKGATGVKRTTGQHPAGIIIVPDDMDIYDFTPVQYPADDQN 1078

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
            +    T F+   I    ++K D LG    T+++   D       +++   IP DD     
Sbjct: 1079 AAWETTHFDFHSIHD-NILKMDILGHDDPTMIRALQDL-----SRINPQTIPMDDPGVMS 1132

Query: 611  LLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            L ++               GTLG+ +  +  +R  LE   P     ++ +  L       
Sbjct: 1133 LFSSPKALGVTEEQINSKTGTLGLPEFGTRFVRGMLEDTHPKNYSQLLQISGLSHG---T 1189

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             + + N ++  K+ + +I  +I         +I Y         L S  S    + +R  
Sbjct: 1190 GVWLDNAQELIKDGVATIANVIGCRDNIMTDLIHY--------GLDSETSFQVMESVRH- 1240

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             G+ I +E   Q +   +   +  I   + +           Y F ++HA AY +++ + 
Sbjct: 1241 -GRGIPDEW--QAKMHEANVPQWYIDSCLKIK----------YMFPRAHATAYVLMALRI 1287

Query: 777  AWMKTHYPVEFLAASMTLEMDN----------------VEKIKKFCQDAR---------- 810
            A+ K ++P+ +  A  ++  D+                +++I     DA           
Sbjct: 1288 AYFKVYFPLTYYCAFFSVRADDFDVVAMSRGKNAVKAAMKEITDKGNDASAKEKSLLTIL 1347

Query: 811  QFNIQIMPPSVNTPCVDFKVGD--------NRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            +   +++        VD +  D          +     AI G+G   A+ I+ A  +KPF
Sbjct: 1348 ELANEMLERGYKFKMVDLERSDASNWLIDGKTLIAPFRAIPGLGMNVAKQIVAAREEKPF 1407

Query: 863  DSLEDFCSRVDSKKLNRRVLE 883
             S ED   R    K+++ ++E
Sbjct: 1408 LSKEDLAER---GKVSQTIIE 1425


>gi|309776025|ref|ZP_07671017.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916307|gb|EFP62055.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Erysipelotrichaceae bacterium 3_1_53]
          Length = 1271

 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 92/428 (21%), Positives = 165/428 (38%), Gaps = 82/428 (19%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV-G 462
            FE FL  +   +PD D++F  D +     Y +  +G + V +  T G++  + A   V G
Sbjct: 774  FETFLGFEGDKVPDIDLNFSGDYQPNAHAYTKEVFGDDHVYRAGTIGTVATQTAFGYVKG 833

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
               +M                           +   R A++        L +++  EG+ 
Sbjct: 834  YEEEM-------------------------GIEGSMRNAQV--------LHLAKGCEGVK 860

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLI 569
            R    H  GI++        +P+  DV    PV             T F    I    ++
Sbjct: 861  RTTGQHPGGIIV--------IPLDLDVHDFTPVQYPANNPYAEWKTTHFEFHDIHD-NVL 911

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
            KFD LG    T ++     + +R   +D + IP +D ET  + +    L I   +S+   
Sbjct: 912  KFDILGHVDPTAMK-----MLERMSGIDPTTIPMNDPETMSVFSKVDALKIDTSKSTEET 966

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGV 688
             A  G+       +  ++ L RP   D ++  +   +G +  + +   LID      + V
Sbjct: 967  GA-AGLPEFGTPFVRGILELTRPTTFDELLKISGLSHGTDVWLGNAKDLIDNGTCTLKSV 1025

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK---ERFISGASKNGISKTI 745
            I  ++ +M        Y L +   LR  +   I E + K K   + +I     NG+    
Sbjct: 1026 IGCRDDIMV-------YLLHKG--LRPKLAFTIMESVRKGKGLKDEWIPEMKANGVEDWY 1076

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD--NVEKIK 803
              +  ++      Y F K+HA AY +++ + AW K H P  +     ++  D  ++E + 
Sbjct: 1077 IDSCLKI-----KYMFPKAHATAYVMMAIRIAWFKVHRPQVYYCMFFSIRCDAYDIETMI 1131

Query: 804  KFCQDARQ 811
            K  Q  R+
Sbjct: 1132 KGEQAIRR 1139


>gi|255103312|ref|ZP_05332289.1| DNA polymerase III, alpha subunit [Clostridium difficile QCD-63q42]
          Length = 346

 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 17/178 (9%)

Query: 739 NGISKTIAVNIFE----LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
           N I K    N FE    ++   A Y FN SH+ +YA  S   A++K+HYP+E+   +  L
Sbjct: 11  NWIKKVGTENNFEDTWQVVNDAASYSFNASHSLSYAYDSLYCAYLKSHYPLEYYTVAFNL 70

Query: 795 EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--FKVGDNRIYYSLAAIKGVGTTTARH 852
             ++ E+ +K   +   F+I++  P       +  F    N IY  + +IK + +    +
Sbjct: 71  YNEDTERTRKLTDEIEYFSIKLENPKFRFSKSEYFFNRDTNSIYKGIESIKFLNSDIGEY 130

Query: 853 IMEASADKPFDS----LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
           +  +  D  +DS    L D    ++SK+L+  +L  L F    + FG S  +LL++ D
Sbjct: 131 LY-SLKDNKYDSFLELLIDLQGHINSKQLS--ILIKLDF---FEEFGKSN-KLLETYD 181


>gi|170761721|ref|YP_001787734.1| DNA polymerase III PolC [Clostridium botulinum A3 str. Loch Maree]
 gi|169408710|gb|ACA57121.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum A3 str. Loch Maree]
          Length = 1432

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 125/582 (21%), Positives = 212/582 (36%), Gaps = 123/582 (21%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +++L   A G + L +LVS+  L    K+  R+  S + E   EGLI+ +   +G I + 
Sbjct: 609  LIILAKNAVGLKNLYKLVSKSNLEYFFKRP-RMAKSLINEY-KEGLIIGSACEAGQIYKE 666

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVN---LQRHRGYDRYRE-----SQVVQLAYTHELP 210
                 ++   K ++ F      +   N   L R+      +E      ++ +L   +  P
Sbjct: 667  ILKGKTKEELKNMIDFYDYLEIQPLGNNEFLVRNGSVKDEKELEEINKKICELGEFYNKP 726

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
            +VAT +  FL EE      +LM+       S  D     P  Y +   EM+  F  L E 
Sbjct: 727  VVATCDVHFLDEEHEVFRRILMS---GQGFSDADN---QPPLYFRTTEEMLKEFEYLGEE 780

Query: 270  -----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
                  + NT +IA     I  +     P  IE   +DI++    +              
Sbjct: 781  KAKEVVIYNTNKIADMIDEIKPIPDETFPPKIEGAEEDIRRMTTEKAH------------ 828

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              AI      +   +RL  ELN I    ++  +LI    +  + ++   VG  RGS   S
Sbjct: 829  --AIYGDPLPEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SRGSVGSS 885

Query: 385  VTAYALTITDIDPL---------RFS--------------------------------LL 403
              A    IT+++ L         ++S                                + 
Sbjct: 886  FAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLKDKDCPKCGTKLIKDGHDIP 945

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A   V +
Sbjct: 946  FETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTAYGFVKK 1005

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             L                                 +  +  +  ++RL   S+   G+ R
Sbjct: 1006 YLDE-------------------------------KNIKANNAEIERL---SKGCTGVKR 1031

Query: 524  HASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
             +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D LG   
Sbjct: 1032 TSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSIS-GRLLKLDILGHDD 1090

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
             T+L+     + Q   +VD   +P  D +   L T+   LG+
Sbjct: 1091 PTILR-----MLQDLTQVDPKSVPLGDPKVISLFTSPKALGV 1127


>gi|222873367|gb|EEF10498.1| predicted protein [Populus trichocarpa]
          Length = 388

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 46/88 (52%)

Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
           G  +  A   F  +  F +YGF +SHAA++A++ Y +AW K +YP  F AA +  +    
Sbjct: 5   GYPRAFAERCFRQIEGFGEYGFPESHAASFALLVYASAWFKAYYPDVFCAAILNSQPMGF 64

Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVD 827
               +  +DAR+  ++I    +N+   D
Sbjct: 65  YAPAQLVRDAREHGVEIREVDINSSKWD 92


>gi|325479569|gb|EGC82665.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
            prevotii ACS-065-V-Col13]
          Length = 1369

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 177/908 (19%), Positives = 337/908 (37%), Gaps = 208/908 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            S+ +      G + L +L+S   + +      +  +S L++   EGLI+ +G   G +  
Sbjct: 542  SVTVYAKNKTGLKNLYKLISESRM-NHFNNEAKTPISVLEKY-REGLIVGSGADEGIL-- 597

Query: 158  AFFF-----NSSQVAEKR-LLTFKKL-----FGDRLYVNLQRHRGYDRYRE--SQVVQLA 204
             F++     N S + + R +  F +L     F D   +N  R R +D+ R+    ++ +A
Sbjct: 598  -FYYLAQGRNKSDINKIRDMFDFYQLAPLGVFSDE--INKGRLRDFDQVRQINKNILAMA 654

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
                   VAT    +L ++DY    +L  + H     +       P +Y +   EM+  F
Sbjct: 655  KEDNKLAVATGAVRYLEKDDY----ILRNILHKGQYFKYHESE--PLYYFRTTKEMLDEF 708

Query: 265  SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
            S L    +  V I               P+ I +  +DI+   +     K + G +  L 
Sbjct: 709  SYLTPLDQEDVVIRN-------------PKKIVELIEDIRPIPKGTFPPK-IEGSDKELR 754

Query: 325  QGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            +    K +        +    RL+ ELN I    ++  ++I    +  +  +   VG  R
Sbjct: 755  ETCFNKAHSIYGDPLPKIVEDRLNRELNSIISNGYAVLYIIAKKLVGKSNDDGYLVG-SR 813

Query: 379  GSGAGSVTAYALTITDIDPLR--------------------------------------- 399
            GS   S  A    IT+++PL                                        
Sbjct: 814  GSVGSSFAATMADITEVNPLSPHYVCPSCKHSEFFEDDLLGAGIDYPDKVCPECGTMMKK 873

Query: 400  --FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
               ++ FE FL  +    PD D++F  + +  + +Y +  +G  +V +  T G++Q   A
Sbjct: 874  DGHNIPFEVFLGFEGDKEPDIDLNFAGEYQPTIHKYTEELFGEGKVFRAGTIGAIQDNTA 933

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
               + +     YS+                       D  F  A++         +I + 
Sbjct: 934  FGYIKK-----YSE---------------------DYDVEFTNAQIR--------KIQRG 959

Query: 518  LEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFD 572
            L+ + R    H  G+++   D  +  + P+     D R D+  T F    + +  L+K D
Sbjct: 960  LKDVKRTTGQHPGGLIVVPDDIEIFDICPIQYPADDGRGDIKTTHFTYNMMHET-LLKLD 1018

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLS----LIPFDDHETY---HLLTTK--GTLGIFQL 623
             LG    ++++   D      +++ +     +  F   ET    H  +    GTLGI + 
Sbjct: 1019 LLGHDVPSIIRALQDLTGTNPLEITMGDPKVMKIFSSTETLDIKHDFSNNEIGTLGIPEF 1078

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI--VVYNNRKNGKEKIVSIHPLID 679
             ++ +R  L+   P    ++  +  L     +  +N   +V N   +  E I +   +++
Sbjct: 1079 GTNFVRGMLKDAYPTKFSEMTRISGLSHGTDVWLNNAQDLVRNGTASFDEIISTRDDIMN 1138

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
             +++  QG             L    S S  + +R+  GK + +E+       +S   +N
Sbjct: 1139 ALIQ--QG-------------LDKKKSFSIMEKVRK--GKPLSDEI-------LSYMREN 1174

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN- 798
             + +    +  ++      Y F K+HA AY ++SY+ A+ K +YP  F A     ++++ 
Sbjct: 1175 NVPEWYIESCLKI-----QYLFPKAHAVAYCLMSYRIAYYKVYYPEAFYATYYNTKINDF 1229

Query: 799  --------VEKIKKFCQDARQ-FNIQIMPPSVNT--------PCVDFKVGDNRIYYS--- 838
                    +E I+K   + R  F++      + T           D K+    IY S   
Sbjct: 1230 KYSTIIKGLESIQKALDEVRDSFDLSQRDKQIRTVLEVAEEMAARDIKLEKADIYKSDAT 1289

Query: 839  --------------LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
                          L+++  V    A  I+       F S+ED   R     +N+  L S
Sbjct: 1290 KFLLSDRKGYILPPLSSVDDVSEAMAYDIVRERDKGEFISIEDLKQRT---SVNKNALNS 1346

Query: 885  LVFAGALD 892
            L   G ++
Sbjct: 1347 LKSLGIIE 1354


>gi|289673969|ref|ZP_06494859.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae FF5]
          Length = 85

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 41/78 (52%)

Query: 734 SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
           +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W+K H P  F  A + 
Sbjct: 3   TGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPAAFTCALIN 62

Query: 794 LEMDNVEKIKKFCQDARQ 811
                     +  QDAR+
Sbjct: 63  SWPMGFYSPDQLLQDARR 80


>gi|218673335|ref|ZP_03523004.1| DNA polymerase III, alpha chain [Rhizobium etli GR56]
          Length = 251

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 109/251 (43%), Gaps = 36/251 (14%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           S+  LQV + +S L GA S   + +        A+ + D N+L   +   + + A G++ 
Sbjct: 2   SYAELQVTTHFSFLRGASSAQELFETAKQLGIEALGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           ++GC+LD  + D +              S+++       Y RL  L++    L + +   
Sbjct: 62  VVGCRLD--LADGM--------------SVLVYPMDRSAYSRLTRLIT----LGKSRGGK 101

Query: 130 RIC-LSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             C L W   +  +EG+I +      P D         +   +L    +LFGDR YV+L 
Sbjct: 102 NNCILHWDDIVAYSEGMIGILV-PDLPDD---------LCAIQLRKMAELFGDRAYVSLC 151

Query: 188 -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK--D 244
            R R  D+ R  ++  +A   ++  V TN+ LF      +  D++  + H+T +     +
Sbjct: 152 LRRRPNDQLRLHEISNMAARFKVRTVVTNDVLFHEPGRRQLQDIVTCIRHNTTIDDVGFE 211

Query: 245 RPRVTPDHYLK 255
           R R   D YLK
Sbjct: 212 RER-HADRYLK 221


>gi|229824076|ref|ZP_04450145.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
 gi|229786430|gb|EEP22544.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
          Length = 1435

 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 130/663 (19%), Positives = 230/663 (34%), Gaps = 193/663 (29%)

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +R++ EL  I    F+  +LI    +  +  +   VG  RGS   S+ A    IT+++PL
Sbjct: 846  KRIEKELKSIIGNGFAVIYLISQKLVHKSVSDGYLVG-SRGSVGSSLVATLTGITEVNPL 904

Query: 399  ---------RFS--------------------------------LLFERFLNPDRMSMPD 417
                     ++S                                + FE FL      +PD
Sbjct: 905  APHYYCPNCQYSEFIADGSVGSGYDLPAKDCPHCGHALNKDGQDIPFETFLGFYGDKVPD 964

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ-----MPYSQV 472
             D++F    +     Y +  +G + V +  T  ++  + A   V   L+     +P ++ 
Sbjct: 965  IDLNFSGAYQPRAHAYTKELFGEDYVYRAGTISTVAERTAFGYVKGYLEVAQQFLPQAEK 1024

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            +RL K I                                       EG+ R    H  GI
Sbjct: 1025 ERLAKGI---------------------------------------EGVKRTTGQHPGGI 1045

Query: 533  VIGDRPLSQLVPMYRDVRSDLPV-------------TQFNMKWIEKAGLIKFDFLGLKTL 579
            ++        +P Y DV    P+             T F+   I    ++K D LG    
Sbjct: 1046 IV--------IPDYMDVYDFTPIQYPADEVTAEWRTTHFDFHSIHD-NVLKLDILGHDDP 1096

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLES 625
            T+++   D        +D   IP  D +   + ++               GTLGI +  +
Sbjct: 1097 TVIRMLQDLSG-----IDPKTIPPTDPDVMKIFSSPEVLGVTPEQIFSKTGTLGIPEFGT 1151

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
              +R  LE  +P    +++ +  L       ++ + N ++  K KI  +  +I       
Sbjct: 1152 GFVRGMLEESKPATFAELLQISGLSHG---TDVWLGNAQELIKNKIAPLAKVIGCRDDIM 1208

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
              +I Y         L  G +    + +R+  GK I E  D Q E       +  I   +
Sbjct: 1209 VTLIYYG--------LEDGLAFKIMESVRK--GKGIPE--DWQAEMRAKKVPEWYIDSCL 1256

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI--- 802
             +           Y F K+HAAAY +++ + A+ K H P+ + AA  ++  D+ + +   
Sbjct: 1257 KIK----------YMFPKAHAAAYVLMALRVAYFKVHMPIMYYAAYFSVRADDFDIVAMH 1306

Query: 803  ---------------KKFCQDARQFNI------------------QIMPPSVNTPCVDFK 829
                           K F    +  N+                   I     +  C  F 
Sbjct: 1307 QGKEMVKRRIREINDKGFDASVKDKNLLTVLELANEMLERGLSFQMISLEKSDADC--FI 1364

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +  N +     A+ G+G   A+ I++A  + PF S ED   R    K+++ +L+ L   G
Sbjct: 1365 IEGNSLIPPFRAVPGLGANVAQQIIKARQEAPFLSKEDLQKR---GKVSKTILDYLSEQG 1421

Query: 890  ALD 892
             L+
Sbjct: 1422 VLN 1424


>gi|92111590|gb|ABE73539.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 81/162 (50%), Gaps = 19/162 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P++  +   +    D     +L A++ +  +S+     + P +  L +  E+ S +SD
Sbjct: 13  DYPVIPLHTVRYFENVDRSTIQMLHAISQNVSLSEAS---ICPMNQLLFSPQEIESAYSD 69

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           +PEAL N  ++    ++        LPRF  ++   +     ++LR  A +GLE +   G
Sbjct: 70  IPEALNNLEQLVSDITYQFDTDLK-LPRF-NRDMPAV-----DQLRQLAQSGLETKKLSG 122

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
           A+        Y++RLD EL++I +M F  YFLIV D +++ +
Sbjct: 123 AV--------YQERLDKELSIIHQMGFDDYFLIVWDLLRFGR 156


>gi|92111614|gb|ABE73551.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 19/162 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P+V  +   +    D     +L A++ +  +S+     + P +  L +  EM S +SD
Sbjct: 13  DYPVVPLHTVRYFENADRSTIQMLHAISQNVSLSEAS---ICPMNQLLFSPQEMESAYSD 69

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           +PEAL N  ++    ++        LPRF  ++   +     ++LR  A +GLE +    
Sbjct: 70  IPEALNNLEQLVSDITYQFDTDLK-LPRF-NRDMPAV-----DQLRQLAQSGLESKKLTS 122

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
           A+        Y++RLD EL++I +M F  YFLIV D +++ +
Sbjct: 123 AV--------YQERLDKELSIIHQMGFDDYFLIVWDLLRFGR 156


>gi|92111582|gb|ABE73535.1| DNA polymerase III [Streptococcus salivarius]
 gi|92111584|gb|ABE73536.1| DNA polymerase III [Streptococcus salivarius]
 gi|92111592|gb|ABE73540.1| DNA polymerase III [Streptococcus salivarius]
 gi|92111594|gb|ABE73541.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 19/162 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P++  +   +    D     +L A++ +  +S+     + P +  L +  EM S +SD
Sbjct: 13  DYPVIPLHTVRYFENVDRSTIQMLHAISQNVSLSEAS---ICPMNQLLFSPQEMESAYSD 69

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           +PEAL N  ++    ++        LPRF  ++   +     ++LR  A +GLE +    
Sbjct: 70  IPEALNNLEQLVSDITYQFDTDLK-LPRF-NRDMPAV-----DQLRQLAQSGLETKKLSA 122

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
           A+        Y++RLD EL++I +M F  YFLIV D +++ +
Sbjct: 123 AV--------YQERLDKELSIIHQMGFDDYFLIVWDLLRFGR 156


>gi|92111612|gb|ABE73550.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 19/162 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P+V  +   +    D     +L A++ +  +S+     + P +  L +  EM S +SD
Sbjct: 13  DYPVVPLHTVRYFENADRSTIQMLHAISQNVSLSEAS---ICPMNQLLFSPQEMESAYSD 69

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           +PEAL N  ++    ++        LPRF  ++   +     ++LR  A +GLE +    
Sbjct: 70  IPEALNNLEQLVSDITYQFDTDLK-LPRF-NRDMPAV-----DQLRQLAQSGLESKKLTS 122

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
           A+        Y++RLD EL++I +M F  YFLIV D +++ +
Sbjct: 123 AV--------YQERLDKELSIIHQMGFDDYFLIVWDLLRFGR 156


>gi|92111586|gb|ABE73537.1| DNA polymerase III [Streptococcus salivarius]
 gi|92111588|gb|ABE73538.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 19/162 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P++  +   +    D     +L A++ +  +S+     + P +  L +  EM S +SD
Sbjct: 13  DYPVIPLHTVRYFENVDRSTIQMLHAISQNVSLSEAS---ICPMNQLLFSPQEMESAYSD 69

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           +PEAL N  ++    ++        LPRF  ++   +     ++LR  A +GLE +    
Sbjct: 70  IPEALNNLEQLVSDITYQFDTDLK-LPRF-NRDMPAV-----DQLRQLAQSGLETKKLSA 122

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
           A+        Y++RLD EL++I +M F  YFLIV D +++ +
Sbjct: 123 AV--------YQERLDKELSIIHQMGFDDYFLIVWDLLRFGR 156


>gi|295426318|ref|ZP_06818977.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664]
 gi|295063991|gb|EFG54940.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664]
          Length = 1435

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 101/503 (20%), Positives = 194/503 (38%), Gaps = 95/503 (18%)

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
            + + +L    + P+VA +++ ++   +     +L++   S      +R +  PD +  + 
Sbjct: 715  TNIYKLGKELKKPVVADSDAHYVDPHEKIYRTILISAQRSN----PNRNKPQPDLHFYST 770

Query: 258  SEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEE 308
             EM+  F+ L E       ++NT +IA     I  +   + P  I+   +E  D+   + 
Sbjct: 771  QEMLDAFAFLGEDAAKEIVIDNTNKIADELEEIAPIKDGLYPPHIDNADQEMKDLTYNKA 830

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL  K +  +                  + R+D ELN I    ++  +LI    +  + 
Sbjct: 831  YELYGKPLPKI-----------------VKDRIDLELNSIISNGYAVIYLISQRLVAKSN 873

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFD 419
            K+   VG  RGS   S+ A    IT+++PL         ++S  +          +PD +
Sbjct: 874  KDGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPKCKYSHFYTNGEYGSGFDLPDKN 932

Query: 420  IDFC-----QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
               C     +D +D         +G ++V  I    S   +    +  R +         
Sbjct: 933  CPKCGTPLVKDGQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM--------- 982

Query: 475  LCKLIPNDPAHPVSLQAIADDSRF---------REARLADPSVDRLLEISQKLEGLYRHA 525
                 P++     ++  +AD + +         R+ +L +  +DRL   +  + G+ R  
Sbjct: 983  ---FGPDNSYRAGTIATVADKTAYGYAKHFDEERDLKLRNAELDRL---ATGVSGVKRTT 1036

Query: 526  STHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              H AGIV+   +  +    P+     DV +    T F+   I    ++KFD LG    T
Sbjct: 1037 GQHPAGIVVVPNNMDIYDFTPVQYPADDVNAAWLTTHFDFHSIHD-NILKFDILGHDDPT 1095

Query: 581  LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESS 626
            +++     + Q    +D   IP DD     L ++               GTLGI +  + 
Sbjct: 1096 MIR-----MLQDLSGIDPLTIPPDDPGVMSLFSSPKILGVTPEQIQSQTGTLGIPEFGTR 1150

Query: 627  GMRQALEGMQPDCIEDIIALVSL 649
             +R  LE  +P    +++ +  L
Sbjct: 1151 FVRGMLEETKPTTFAELLQISGL 1173


>gi|258615947|ref|ZP_05713717.1| DNA polymerase III PolC [Enterococcus faecium DO]
          Length = 340

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/345 (19%), Positives = 136/345 (39%), Gaps = 72/345 (20%)

Query: 596 VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
           +D   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 4   IDPQTIPTDDPEVMRIFAGPEVLGVSQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFA 63

Query: 642 DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
           +++ +  L     +          N +E I      +  ++     +++Y    +  A L
Sbjct: 64  ELLQISGLSHGTDV-------WLGNAEELIRRGDATLAEVIGCRDDIMVY----LIHAGL 112

Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            SG +    + +R+    KI +E+   +E ++S   +N +      +  ++      Y F
Sbjct: 113 DSGMAFKIMETVRKGQWNKIPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMF 164

Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC-------QDARQFNI 814
            K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +   C       Q  ++   
Sbjct: 165 PKAHAAAYVLMALRVAYFKVYFPILYYCAYFSVRADDFDLV-SMCKGKDAVKQAMKEITD 223

Query: 815 QIMPPSV----------------------------NTPCVDFKVGDNRIYYSLAAIKGVG 846
           + +  SV                             +  V+F +  + +     A+  +G
Sbjct: 224 KGLDASVKEKNQLTVLELANEMLERGFKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLG 283

Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
           T  A+ I+EA  D PF S ED  +R    K+++ ++E +   G L
Sbjct: 284 TNVAKQIVEARKDGPFLSKEDLATR---GKVSKTLIEYMNDNGVL 325


>gi|92111618|gb|ABE73553.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 19/162 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P+V  +   +    D     +L A+  +  +S+     + P +  L +  EM S +SD
Sbjct: 13  DYPVVPLHTVRYFENADRSTIQMLHAILQNVSLSEAS---ICPMNQLLFSPQEMESAYSD 69

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           +PEAL N  ++    ++        LPRF  ++   +     ++LR  A +GLE +    
Sbjct: 70  IPEALNNLEQLVSDITYQFDTDLK-LPRF-NRDMPAV-----DQLRQLAQSGLESKKLTS 122

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
           A+        Y++RLD EL++I +M F  YFLIV D +++ +
Sbjct: 123 AV--------YQERLDKELSIIHQMGFDDYFLIVWDLLRFGR 156


>gi|92111602|gb|ABE73545.1| DNA polymerase III [Streptococcus salivarius]
 gi|92111604|gb|ABE73546.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 19/162 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P+V  +   +    D     +L A++ +  +S+     + P +  L +  EM S +SD
Sbjct: 13  DYPVVPLHTVRYFENSDRSTIQMLHAISQNVSLSEAS---ICPMNQLLFSPQEMESAYSD 69

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           +PEAL N  ++    ++        LPRF  ++   +     ++LR  A +GLE      
Sbjct: 70  IPEALNNLEQLVSDITYQFDTDLK-LPRF-NRDMPAV-----DQLRQLAQSGLE------ 116

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             +K   +  Y++RLD EL++I +M F  YFLIV D +++ +
Sbjct: 117 --SKKLTSPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGR 156


>gi|92111572|gb|ABE73530.1| DNA polymerase III [Streptococcus vestibularis]
          Length = 160

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 19/162 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P+V  +   +    D      L A++ +  +S+     + P +  L +  EM S +SD
Sbjct: 13  DYPVVPLHTVHYFENADRSTIQTLHAISQNVSLSEAS---ICPMNQLLFSPQEMESAYSD 69

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           +PEAL N  ++    ++    +   LPRF  +E   +     ++LR  A +GL+      
Sbjct: 70  IPEALNNLEQLVSDITYQFDTNLK-LPRF-NREMPAV-----DQLRQLAQSGLD------ 116

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             +K      Y++RLD EL++I +M F  YFLIV D +++ +
Sbjct: 117 --SKALREPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGR 156


>gi|258614815|ref|ZP_05712585.1| DNA polymerase III PolC [Enterococcus faecium DO]
          Length = 446

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 127/337 (37%), Gaps = 82/337 (24%)

Query: 199 QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            +V++  + +  +VAT N  +L+EED     +L+   +S   +        PD + +   
Sbjct: 63  NLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILI---NSMGGANPLNRHSLPDVHFRTTD 119

Query: 259 EMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
           EM++ F  L E       +ENT +IA  C  ++ V                    ++EL 
Sbjct: 120 EMLTAFHFLGEETAKEIVVENTNKIADICEEVIPV--------------------KDELY 159

Query: 313 NKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + G E  +++ +  K          +  ++RL  ELN I    FS  +LI    +  
Sbjct: 160 TPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLKKELNSINGNGFSVIYLIAQKLVHK 219

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
           + ++   VG  RGS   S  A    IT+++PL                            
Sbjct: 220 SNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPE 278

Query: 400 --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                           + FE FL      +PD D++F  D + E   Y +  +G + V +
Sbjct: 279 KQCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYR 338

Query: 446 IITFGSLQAKAALRDV-----GRALQMPYSQVDRLCK 477
             T G++  K A   V        LQ   ++VDRL K
Sbjct: 339 AGTIGTVADKTAYGYVKGYERDNNLQFRSAEVDRLAK 375


>gi|313678200|ref|YP_004055940.1| DNA polymerase III subunit alpha [Mycoplasma bovis PG45]
 gi|312950476|gb|ADR25071.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            bovis PG45]
          Length = 1458

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 131/668 (19%), Positives = 239/668 (35%), Gaps = 184/668 (27%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            ++R+D ELN I +  F   + I    ++ +      VG  RGS   S  A  + I++++P
Sbjct: 864  QKRIDSELNPIIKYGFDVIYWISYKLVKLSIDQGFIVG-SRGSIGSSFVASLIGISEVNP 922

Query: 398  L---------RF--------------------------------SLLFERFLNPDRMSMP 416
            L         ++                                S+ FE FL  +   +P
Sbjct: 923  LIPHYCCPNCKYFEVANAPGVTSGYDLPDKPCPECNTLIKGDGQSIPFETFLGFNADKVP 982

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D++F  + +  V   ++  +G     +  T   +  K A   V        S  ++  
Sbjct: 983  DIDLNFTGEFQGVVHEEIRRLFGKSHTFRAGTISKVAEKTAFGYVK-------SYAEQTR 1035

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            + IP      + ++ +A+                      +++ + R    H  GI+I  
Sbjct: 1036 QTIPQ-----IFVEFLAN----------------------RIKDVKRTTGQHPGGIIIIP 1068

Query: 537  RPLS--QLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +        P+     D  S    T F+ K I    ++KFD LG    T ++     L +
Sbjct: 1069 KQFDIFDFTPINYPANDQSSSWLTTHFDYKAIHD-NVLKFDILGHDNPTSIK-----LLE 1122

Query: 592  RGVKVDLSLIPFDDHETYHLLTTK---------------GTLGIFQLESSGMRQALEGMQ 636
            +   +++  +P +D     L ++                G +G+ +  +S +RQ L  ++
Sbjct: 1123 QYTGINIYDVPKNDQNVIKLFSSTEPMGISPEQISNEKTGAIGLPEFGTSFVRQMLNDIK 1182

Query: 637  PDCIEDIIALVSLYRPGPI-----DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            P  + D+I++  L     +     D +V+   RK    ++V     I PML       + 
Sbjct: 1183 PKTVADLISISGLSHGTNVWINNADELVLEKGRK--LNEVVCCRDDIMPMLIAKGIEPLM 1240

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
               +M+  +   G S  E ++L +     +   + K  ++                    
Sbjct: 1241 SFTLMEKVRKGKGLSNDEVELLEK---HNVPNWLIKSMQKI------------------- 1278

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKI 802
                  +Y F K+HA AY  ++   AW K + P+ F A+  T           +D    I
Sbjct: 1279 ------EYLFPKAHATAYVTMALWIAWFKLYEPLAFYASYFTAHSKADDIKNMIDKPNGI 1332

Query: 803  K--------KFCQD-------------------ARQF---NIQIMPPSVNTPCVDFKVGD 832
            K        K  +D                   AR F   N+ I         +D + G 
Sbjct: 1333 KVSKRLYELKKTEDRSNKENDLIGVFEVAEELYARGFYISNVDIDKSQAEKWLIDKEKG- 1391

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK-----LNR-RVLESLV 886
              +    + I+ +GT  A  I+ A  +KPF S EDF +R    K     +N+ ++L+SL 
Sbjct: 1392 -CLIPPFSTIESLGTVKANDIVNAREEKPFLSKEDFKTRTGVSKTVFDTMNQMKILDSLN 1450

Query: 887  FAGALDCF 894
             +  L  F
Sbjct: 1451 DSDQLTLF 1458


>gi|92111608|gb|ABE73548.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 19/162 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P+V  +   +    D     +L A++ +  +S+     + P +  L +  EM S +SD
Sbjct: 13  DYPVVPLHTVRYFENADRSTIQMLHAISQNVSLSEAS---ICPMNQLLFSPQEMESAYSD 69

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           +PEAL N  ++    ++        LPRF  ++   +     ++LR  A +GLE      
Sbjct: 70  IPEALNNLEQLVSDITYQFDTDLK-LPRF-NRDMPAV-----DQLRQLAQSGLE------ 116

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             +K   +  Y++RLD EL++I +M F  YFLIV D +++ +
Sbjct: 117 --SKKLTSPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGR 156


>gi|291536050|emb|CBL09162.1| DNA polymerase III, alpha subunit (gram-positive type) [Roseburia
           intestinalis M50/1]
 gi|291538543|emb|CBL11654.1| DNA polymerase III, alpha subunit (gram-positive type) [Roseburia
           intestinalis XB6B4]
          Length = 609

 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 99/505 (19%), Positives = 181/505 (35%), Gaps = 125/505 (24%)

Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
           ++RLD ELN I    ++  ++I    +  + ++   VG  RGS   S  A    IT+++P
Sbjct: 11  KERLDRELNSIISNGYAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFAATMSGITEVNP 69

Query: 398 LR---------------------------------------------FSLLFERFLNPDR 412
           L+                                             F + FE FL    
Sbjct: 70  LQAHYRCPNCKYSDFDSPEVKAFSGRSGCDMPDKICPVCGEKLVKDGFDIPFETFLGFKG 129

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG-----RALQM 467
              PD D++F  + + +   Y +  +G+ +  +  T G+L  K A   +      R +  
Sbjct: 130 NKEPDIDLNFSGEYQSKAHAYCEVIFGYGQTFRAGTIGTLADKTAFGYIKNYYEERGIHK 189

Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
              ++DR                                       I Q   G+ R    
Sbjct: 190 RNCEIDR---------------------------------------IVQGCVGVRRTTGQ 210

Query: 528 HAAGIVIGDRPLSQLVPMY-------RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
           H  GIV+   P+ + +  +        D+ +    T F+   I+   L+K D LG    T
Sbjct: 211 HPGGIVV--LPVGEEINTFTPVQHPANDMTTATVTTHFDYHSIDH-NLLKLDILGHDDPT 267

Query: 581 LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           +++   D        +D   IP DD     L      LG+   +  G+     G+     
Sbjct: 268 MIRMLQDLTG-----IDPVTIPLDDEAVMSLFKNTSALGVTPEDIGGIPLGCLGIPEFGT 322

Query: 641 EDIIALVSLYRPGPIDNIVVYNNRKNGKE-KIVSIHPLIDPMLKETQGVIIYQEQVM--- 696
           E  + +V   +P    +++  +   +G +  + +   LI+  L      I  ++ +M   
Sbjct: 323 EFAMQMVIDAKPQEFSDLIRISGLSHGTDVWLGNAQTLIEQGLATISTAICTRDDIMIYL 382

Query: 697 -QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            Q+  L S  S +  + +R+  GK +KEE   ++E       +  I   + +        
Sbjct: 383 IQMG-LDSEQSFTIMESVRK--GKGLKEEW--KEEMRAHDVPEWYIDSCLKIK------- 430

Query: 756 FADYGFNKSHAAAYAVISYQTAWMK 780
              Y F K+HAAAY +++++ A+ K
Sbjct: 431 ---YMFPKAHAAAYVMMAWRIAYCK 452


>gi|257463850|ref|ZP_05628237.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
          Length = 289

 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 1/157 (0%)

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            LN++ LE+ ++AGALD    +R + ++SLD +  Y Q   K    +  N+F   K     
Sbjct: 6    LNKKGLEAFIYAGALDSLPGNRHEKIESLDKVLDYVQRKSKADDIQQMNLFGDSKKNLI- 64

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            + +L +       +  E E+  LGFY S +PLD Y+ + R                  + 
Sbjct: 65   QFSLPQLEEYPMDILLEKEKEFLGFYVSANPLDKYENLYRSFEFDELNVLKEEHTEKEVW 124

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            L  +V + ++ +T+KG  + +        +     FP
Sbjct: 125  LYGIVQNLKKTRTKKGDPMAFADLENYQGQIPTVIFP 161


>gi|92111578|gb|ABE73533.1| DNA polymerase III [Streptococcus vestibularis]
          Length = 160

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 19/162 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P+V  +   +    D      L A++ +  +S+     + P +  L +  EM S +SD
Sbjct: 13  DYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEVS---ICPMNQLLFSPQEMESAYSD 69

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           +PEAL N  ++    S+    +   LPRF  ++   +     ++LR  A +GL+      
Sbjct: 70  IPEALNNLEQLVSDVSYQFDTNLK-LPRF-NRDMPAV-----DQLRQLAQSGLD------ 116

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             +K      Y++RLD EL++I +M F  YFLIV D +++ +
Sbjct: 117 --SKALREPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGR 156


>gi|240047815|ref|YP_002961203.1| DNA polymerase III PolC [Mycoplasma conjunctivae HRC/581]
 gi|239985387|emb|CAT05400.1| DNA polymerase III alpha subunit [Mycoplasma conjunctivae]
          Length = 1455

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 157/762 (20%), Positives = 294/762 (38%), Gaps = 201/762 (26%)

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPE-------ALENTVEIARRCSFILQVHAPIL--PRF 295
            +  + PD YL    E+++ F+ L +        ++N+  I+ +    +++  P L  P+F
Sbjct: 757  KSHIFPDKYLFTTEELINQFAFLEDEKLIKEIVIKNSNLISDQIDNNIEIIKPGLYKPKF 816

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                       + +E + K           G I      +   +R+  ELN I    F  
Sbjct: 817  -----------DNSEYKLKEFVYENAHKKYGKII----PEKIEKRIKRELNPIIEHGFHV 861

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------FS-- 401
             + I    +  AK+    V   RGS   S+ AY   ITD++PL             FS  
Sbjct: 862  IYWISKSLVHEAKRQGAIVD-SRGSVGSSIVAYLTGITDVNPLEPHYLCLSCQNVEFSDD 920

Query: 402  ---------------------------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                       + FE FL  +   +PD D++F  D + ++  YV
Sbjct: 921  PDILCGYDLPEKKCSKCGHILNRDGQNIPFETFLGFEADKVPDIDLNFSSDIQLKMHDYV 980

Query: 435  QNKYGHE---RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            ++ +G +   R   I+T     A+  +  + R L    + +D+  +          S Q 
Sbjct: 981  RDLFGDKNTFRAGTILT----NAEKTVYGLARKLSEVKASLDKRFQ----------SNQE 1026

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPM---Y 546
            I+    F      D        ++ K  G+ R +  HA GI++   +  +    P+    
Sbjct: 1027 IS----FFTTTFMD-------FLATKANGVKRTSGKHAGGIIVIPEEYDIEDFTPINYPA 1075

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGL---KTLTLLQKSLDFLAQRGVKVDLSLIPF 603
             + +S    T F+   I    L+K D LG    K L LL++        G+K +   IP 
Sbjct: 1076 NNEKSGWKTTHFDYDSIHD-NLLKLDILGHDDPKILLLLEEI------TGIKSET--IPK 1126

Query: 604  DDHETYHLL-TTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             D +   L  +TK              G +G+ +  +  +R+ L+  +     DI+A+  
Sbjct: 1127 SDPQIIELFYSTKPLKIKPEQIGGELTGAIGLPEFGTPFVRKMLQNARVKSFADIVAICG 1186

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM-----QIAQLLS 703
            L            ++ KN  +   +  PLI     + + VI  ++ +M     Q    L+
Sbjct: 1187 L------------SHGKNVWQD--NAEPLIREQKLQIKDVISCRDDIMIYLIKQNLDPLT 1232

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
             +++ E   +R+  G      +D+++E+ +       I+K +     + L K   Y F K
Sbjct: 1233 AFNIMER--VRKGKG------VDEEQEQLM-------IAKNVPNWYIDSLKKIG-YMFPK 1276

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD----------NVEKIKKFCQDARQFN 813
            +HAAAYA+ +++ A+ K +YP+ F +   T+  D          + E  +K  +  ++ N
Sbjct: 1277 AHAAAYAMKAWKIAFFKLYYPLAFYSVFFTIRPDVKDIDSLTLPHAEIDRKIKELRKKVN 1336

Query: 814  -------------IQIMPPSVNTPCVDFKV-----------------GDNRIYYSLAAIK 843
                         I  +  S+      F++                  +N +    ++++
Sbjct: 1337 SSSTSVSAKEKDLIPFLEISLELKARGFEIEKINLEKSEAQQWIINYENNSLIPPFSSLE 1396

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            G+G   A +I++A ++K F S+EDF  R  +     + LE +
Sbjct: 1397 GIGDINASNIVKARSEKAFISIEDFEQRTGTNSTAIKKLEEM 1438


>gi|92111606|gb|ABE73547.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 19/162 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P+V  +   +    D     +L A++ +  +S+     + P +  L +  EM S +SD
Sbjct: 13  DYPVVPLHTVRYFENSDRSTIQMLHAISQNVSLSEA---SICPMNQLLFSPQEMESAYSD 69

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           +PEAL N  ++    ++        LPRF  ++   +     ++L   A +GLE +    
Sbjct: 70  IPEALNNLEQLVSDITYQFDTDLK-LPRF-NRDMPAV-----DQLSQLAQSGLESKKLTS 122

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
           A+        Y++RLD EL++I +M F  YFLIV D +++ +
Sbjct: 123 AV--------YQERLDKELSIIHQMGFDDYFLIVWDLLRFGR 156


>gi|92111610|gb|ABE73549.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 19/162 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P+V  +   +    D     +L A++ +  +S+     + P +  L +  E+ S +SD
Sbjct: 13  DYPVVPLHTVRYFENADRSTIQMLHAISQNVSLSEA---SICPMNQLLFSPQEIESAYSD 69

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           +PEAL N  ++    ++        LPRF  ++   +     ++LR  A +GLE +    
Sbjct: 70  IPEALNNLEQLVSDITYQFDTDLK-LPRF-NRDMPAV-----DQLRQLAQSGLESKKLTS 122

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
           A+        Y++RLD EL++I +M F  YFLIV D + + +
Sbjct: 123 AV--------YQERLDKELSIIHQMGFDDYFLIVWDLLSFGR 156


>gi|92111580|gb|ABE73534.1| DNA polymerase III [Streptococcus vestibularis]
          Length = 160

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 19/162 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P++  +   +    D      L A++ +  +S+     + P +  L +  EM S +SD
Sbjct: 13  DYPVIPLHTVRYFENADRSTIQTLHAISQNVSLSEVS---ICPMNQLLFSPQEMESAYSD 69

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           +PEAL N  ++    S+    +   LPRF  ++   +     ++LR  A +GL+      
Sbjct: 70  IPEALNNLEQLVSDVSYQFDTNLK-LPRF-NRDMPAV-----DQLRQLAQSGLD------ 116

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             +K      Y++RLD EL++I +M F  YFLIV D +++ +
Sbjct: 117 --SKALREPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGR 156


>gi|92111616|gb|ABE73552.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 19/162 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P+V  +   +    D     +L A++ +  +S+     + P +  L +  EM S +SD
Sbjct: 13  DYPVVPLHTVRYFENADRSTIQMLHAISQNVSLSEA---SICPMNQLLFSPQEMESAYSD 69

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           +PEAL N  ++    ++        LPRF  ++   +     ++L   A +GLE +    
Sbjct: 70  IPEALNNLEQLVSDITYQFDTDLK-LPRF-NRDMPAV-----DQLSQLAQSGLESKKLTS 122

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
           A+        Y++RLD EL++I +M F  YFLIV D +++ +
Sbjct: 123 AV--------YQERLDKELSIIHQMGFDDYFLIVWDLLRFGR 156


>gi|326692542|ref|ZP_08229547.1| DNA polymerase III, alpha subunit [Leuconostoc argentinum KCTC 3773]
          Length = 1437

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 186/913 (20%), Positives = 329/913 (36%), Gaps = 221/913 (24%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             LLV  A G + L ELVSR   ++   +  RI  S L++   EGL++ TG + G +    
Sbjct: 613  TLLVKNAVGLKHLYELVSRSN-IEFFARLPRIPRSVLEQ-HREGLLVGTGDTGGDVIVTL 670

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVV------------QLAYTH 207
                   A ++   +        ++ +Q    Y    ES ++             +A   
Sbjct: 671  IEKGYDAALEKAAYYD-------FIEIQPTANYAPMIESGLIADTDKLHDILRDMVAIGD 723

Query: 208  EL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVT-PDHYLKNRSEMVS 262
            EL  P+V T +  + + ED     +L+A       +Q   P  R T P+ + K   E++ 
Sbjct: 724  ELDKPVVVTGDIKYTNPEDRIYRQILIA-------TQPGNPQNRTTLPELHFKTTQELLD 776

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL-RNKAVAGLEV 321
             ++ L E L   V I                  I    +D+   +      N   AG E+
Sbjct: 777  DYAFLGEDLAKKVVIDNT-------------HVIADSLEDVAPLKSGSYPPNIPTAGEEL 823

Query: 322  RLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
                   AK ++        + R+D EL  I    F+ +++I    ++ + K+   VG  
Sbjct: 824  TRRTLETAKKWYGDPIPDVIQARIDQELKAIIGNGFAPHYMIAQRLVEKSNKDGYLVG-S 882

Query: 378  RGSGAGSVTAYALTITDIDPLR----------FSLL------------------------ 403
            RGS   S  A    IT+++P            F L                         
Sbjct: 883  RGSVGSSFVATMSGITEVNPFAPHYRSAHGDYFELADPKVYESGYDLPDKPDPNHPGEML 942

Query: 404  --------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                    FE F+      +PD D++F  D +     Y++  +G   V +  T  ++  K
Sbjct: 943  IGDGQNIPFETFMGFKGDKVPDIDLNFSGDYQPIAHNYMKVLFGEHNVYRAGTIATVAEK 1002

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V               K    D            D  +R        V+RL   +
Sbjct: 1003 TAFGYV---------------KGYERD-----------HDKHYRGTE-----VERL---A 1028

Query: 516  QKLEGLYRHASTHAAGIVIGDRP--LSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIK 570
            Q + G+ R    H  GI+I  R   +    P+     D +S    T  +   I    L+K
Sbjct: 1029 QGITGVKRTTGQHPGGILIVPREYDVYDFTPVQYPADDQKSLWQTTHMDYHSIHD-NLLK 1087

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KG 616
             D LG    T+++   D        +D   IP +D     L T+               G
Sbjct: 1088 MDILGHDDPTMVRTLKDMSG-----IDPQSIPVNDPGVLSLFTSPKALGVTPEQIFSKTG 1142

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            TLG+ +  ++ +R  LE  QP    +++ +  L          V+    N          
Sbjct: 1143 TLGLPEFGTNFVRGMLEETQPHNYSELLQISGLSH-----GTDVWLGNAN---------E 1188

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLS-GYSLSEA-DVLRRA-MGKKIKEEMDKQKERFI 733
            LI+        VI  ++++M    L++ G+  ++A +V+ +   GK I +E   Q     
Sbjct: 1189 LIENGTATIGTVIGTRDKIM--TDLINWGFPAADAFNVMEKVRKGKGITDEYQAQLR--- 1243

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
              A+K  I +    ++ ++      Y F ++HAAAY +++ + A+ K ++P  + A   +
Sbjct: 1244 --AAK--IPEWYIQSMLKI-----KYMFPRAHAAAYVLMALRIAYFKVYFPTIYYATYFS 1294

Query: 794  LEMD---------------------------------NVEKIKKFCQDARQFNIQI-MPP 819
            +  D                                 N+  + +   +A +  I   M  
Sbjct: 1295 VRADQFDIVAMSRGKNATKEALKRLRALGNDATVGDKNLLTVMEMANEALERGITFSMVD 1354

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   ++ +  + +    +A+  +G   A+ I+ A  +KPF S ED   R    K+++
Sbjct: 1355 LYKSEASEWVIDGDTLIPPFSAVPSLGDNVAKQIIVARQEKPFLSKEDLKKR---GKVSQ 1411

Query: 880  RVLESLVFAGALD 892
             V++ L     LD
Sbjct: 1412 TVIDYLTKNSVLD 1424


>gi|319645714|ref|ZP_07999945.1| hypothetical protein HMPREF1012_00979 [Bacillus sp. BT1B_CT2]
 gi|317392261|gb|EFV73057.1| hypothetical protein HMPREF1012_00979 [Bacillus sp. BT1B_CT2]
          Length = 252

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 108/244 (44%), Gaps = 41/244 (16%)

Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-------QRGVK------VDLSLI 601
           +TQFNM   E  G +KFD L ++ L  ++ +LD L        Q  +K      +   ++
Sbjct: 10  ITQFNMGDSEAMGSVKFDLLTIEALDKIRVTLDQLIENEEIQWQGSLKETYNKYIHPDVL 69

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR------PGPI 655
            ++D   + +      + +FQ  +    QA+  +QP  + +     SL R        P+
Sbjct: 70  EYEDARLWEMAGNGEIMDLFQFSTEVGHQAVIKVQPKNLLEAAVTNSLMRLMSDGEEQPV 129

Query: 656 DNIVVYNN---------RKNGKE----KIVSIHPLIDPMLKETQGVIIYQEQVMQIA--Q 700
           D  V Y N         RK G      K+V  H      LK+  GV   QE VMQ+   +
Sbjct: 130 DTYVKYKNNLSLWYEEMRKYGLSDDAIKVVEKH------LKDIYGVADTQEVVMQMVMDK 183

Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            ++G+ + E++ LR+++ KK ++ + + ++ F     + G S  +   ++ +  K   +G
Sbjct: 184 EIAGFDIKESNYLRKSIAKKKEDVLKEVQKLFFKKGKEIGASDNLLNYVWNVQFK-RQFG 242

Query: 761 FNKS 764
            N S
Sbjct: 243 LNDS 246


>gi|291544892|emb|CBL18001.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp.
            18P13]
          Length = 1444

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 102/464 (21%), Positives = 165/464 (35%), Gaps = 113/464 (24%)

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
            LP+VAT +  F+  +D +   +LMA         KD  +  P  YL+   EM+  FS L 
Sbjct: 736  LPVVATCDVHFMDPKDGKYRQILMAGN-----GFKDADQQAP-LYLRTTDEMLEEFSYLG 789

Query: 269  E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            +       +ENT  IA    F+  +        IE   +D+ +   N  R      L   
Sbjct: 790  QEKAYEVVVENTNRIADLIDFVRPIPKGTFTPNIEGAEEDLTRITNNRAREIYGDPLPEI 849

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
            +A              +RLD EL+ I +  FS  ++I    +  ++++   VG  RGS  
Sbjct: 850  VA--------------KRLDRELSSIIKHGFSVLYIIAQKLVSNSEEHGYLVG-SRGSVG 894

Query: 383  GSVTAYALTITDIDPLR-----------------------------------------FS 401
             S  A    I++++PL                                            
Sbjct: 895  SSFVASMAGISEVNPLAPHYVCPKCKHSEFITDGSYGSGFDLPAKNCPNCGIEMRRDGHD 954

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL  D    PD D++F  + +    RY +  +G   V +  T  ++  K A    
Sbjct: 955  IPFETFLGFDGDKAPDIDLNFSGEYQSSAHRYTEELFGRANVFKAGTISTVAEKTAFGYA 1014

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
               L+      DR      N+  +P             E RLA           +   G+
Sbjct: 1015 KHFLE------DR------NESQNPA-----------EENRLA-----------KGCTGV 1040

Query: 522  YRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             R    H  G+V+   D  +    P+        SD+  T F+   +    ++K D LG 
Sbjct: 1041 KRTTGQHPGGMVVVPSDYDVYDFTPVQHPADSADSDVITTHFDFHSLHDT-ILKLDELGH 1099

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
               TL +   D     G+K+  + +P  D +   + T    LG+
Sbjct: 1100 VVPTLYKHLEDL---TGIKI--ADVPTTDPDVIRMCTDVSVLGV 1138


>gi|289610137|emb|CBI60314.1| unnamed protein product [Sordaria macrospora]
          Length = 195

 Score = 53.9 bits (128), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 22/138 (15%)

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
           N  R   PD D+DF  +RR+EVI+Y+  +YG ER     T    + ++A+ +VG+ L + 
Sbjct: 62  NSIRGEPPDIDVDFEHERREEVIQYIYARYGRERAGIAATVIHYRPRSAVGEVGKVLGLT 121

Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
                RL           V   + AD         A     R+LE         RH S H
Sbjct: 122 RDVTQRL--------GSTVWAVSPADGG-------AALYQCRILEFP-------RHLSQH 159

Query: 529 AAGIVIGDRPLSQLVPMY 546
             G V+    L +LVP++
Sbjct: 160 VGGFVLTQGRLDELVPIH 177


>gi|92111598|gb|ABE73543.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 19/162 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P+V  +   +    D     +L A++ +  +S+     + P +  L +  E+ S +SD
Sbjct: 13  DYPVVPLHTVRYFENSDRSTIQMLHAISQNVSLSEAS---ICPMNQLLFSPQEIESAYSD 69

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           +PEAL N  ++    ++        LPRF      +      ++LR  A +GLE      
Sbjct: 70  IPEALNNLGQLVSDITYQFDTDLK-LPRF------NRDMPAVDQLRQLAQSGLE------ 116

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             +K   +  Y++RLD EL++I +M F  YFLIV D +++ +
Sbjct: 117 --SKKLTSPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGR 156


>gi|92111600|gb|ABE73544.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 19/162 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P+V  +   +    D     +L A++ +  +S+     + P +  L +  E+ S +SD
Sbjct: 13  DYPVVPLHTVRYFENSDRSTIQMLHAISQNVSLSEAS---ICPMNQLLFSPQEIESAYSD 69

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           +PEAL N  ++    ++        LPRF  ++   +     ++LR  A +GLE      
Sbjct: 70  IPEALNNLEQLVSDITYQFDTDLK-LPRF-NRDMPAV-----DQLRQLAQSGLE------ 116

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             +K   +  Y++RLD EL++I +M F  YFLIV D +++ +
Sbjct: 117 --SKKLTSPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGR 156


>gi|92111574|gb|ABE73531.1| DNA polymerase III [Streptococcus vestibularis]
          Length = 160

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 19/162 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P+V  +   +    D      L A++ +  +S+     + P +  L +  EM S +SD
Sbjct: 13  DYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEAS---ICPMNQLLFSPQEMESAYSD 69

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           +PEAL N  ++    ++        LPRF  ++   +     ++LR  A +GL+      
Sbjct: 70  IPEALNNLEQLVSDITYQFDTDLK-LPRF-NRDMPAV-----DQLRQLAQSGLD------ 116

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             +K      Y++RLD EL++I +M F  YFLIV D +++ +
Sbjct: 117 --SKALREPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGR 156


>gi|220961826|gb|ACL93350.1| DNA polymerase III [Streptococcus thermophilus]
 gi|220961828|gb|ACL93351.1| DNA polymerase III [Streptococcus thermophilus]
          Length = 160

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 19/162 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P+V  +   +    D      L A++ +  +S+     + P +  L +  EM   +S 
Sbjct: 13  DYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEVS---ICPMNQLLFSAKEMEEAYSK 69

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           LPEAL N  ++    S+    +   LPRF  +E   +     ++LR  A +GL+      
Sbjct: 70  LPEALNNLNQLVSDVSYQFDTNLK-LPRF-NREMPAV-----DQLRQLAQSGLD------ 116

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             +K      Y++RLD EL++I +M F  YFLIV D +++ +
Sbjct: 117 --SKALREPAYQERLDKELSIIHQMGFDDYFLIVWDLLRFGR 156


>gi|92111576|gb|ABE73532.1| DNA polymerase III [Streptococcus vestibularis]
          Length = 160

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 19/162 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P++  +   +    D      L A++ +  +S+     + P +  L +  EM S +SD
Sbjct: 13  DYPVIPLHTVRYFENADRSTIQTLHAISQNVSLSEAS---ICPMNQLLFSPQEMESAYSD 69

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           +PEAL N  ++    ++        LPRF      +      ++LR  A +GL+      
Sbjct: 70  IPEALNNLEQLVSDITYQFDTDLK-LPRF------NRDMPAVDQLRQLAQSGLD------ 116

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             +K      Y++RLD EL++I +M F  YFLIV D +++ +
Sbjct: 117 --SKALREPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGR 156


>gi|220961822|gb|ACL93348.1| DNA polymerase III [Streptococcus thermophilus]
 gi|220961824|gb|ACL93349.1| DNA polymerase III [Streptococcus thermophilus]
          Length = 160

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 19/162 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P+V  +   +    D      L A++ +  +S+     + P +  L +  EM   +S 
Sbjct: 13  DYPVVPLHTVRYFENADRSTIQTLHAISQNVPLSEVS---ICPMNQLLFSAKEMEEAYSK 69

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           LPEAL N  ++    S+    +   LPRF  +E   +     ++LR  A +GL+      
Sbjct: 70  LPEALNNLNQLVSDVSYQFDTNLK-LPRF-NREMPAV-----DQLRQLAQSGLD------ 116

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             +K      Y++RLD EL++I +M F  YFLIV D +++ +
Sbjct: 117 --SKALREPAYQERLDKELSIIHQMGFDDYFLIVWDLLRFGR 156


>gi|220961830|gb|ACL93352.1| DNA polymerase III [Streptococcus thermophilus]
          Length = 160

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 19/162 (11%)

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD 266
           + P+V  +   +    D      L A++ +  +S+     + P +  L +  EM   +S 
Sbjct: 13  DYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEVS---ICPMNQLLFSAKEMEEAYSK 69

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           LPEAL N  ++    S+    +   LPRF  +E   +     ++LR  A +GL+      
Sbjct: 70  LPEALNNLNQLVSDVSYQFDTNLK-LPRF-NREMPAV-----DQLRQLAQSGLDT----- 117

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              K      Y++RLD EL++I +M F  YFLIV D +++ +
Sbjct: 118 ---KALREPAYQERLDKELSIIHQMGFDDYFLIVWDLLRFGR 156


>gi|291320001|ref|YP_003515259.1| DNA polymerase III subunit alpha [Mycoplasma agalactiae]
 gi|290752330|emb|CBH40301.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae]
          Length = 1459

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 133/668 (19%), Positives = 242/668 (36%), Gaps = 184/668 (27%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            ++R+D ELN I +  F   + I    ++ +      VG  RGS   S  A  + I++++P
Sbjct: 865  QKRIDSELNPIIKYGFDVIYWISYKLVKLSIDQGFIVG-SRGSIGSSFVASLIGISEVNP 923

Query: 398  L----------RF-------------------------------SLLFERFLNPDRMSMP 416
            L           F                               S+ FE FL  +   +P
Sbjct: 924  LVPHYCCPKCKHFEIANVPGITSGYDLPDKICPQCNTKIKGDGQSIPFETFLGFNADKVP 983

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D++F  + +  V   ++  +G     +  T   +  K A   V       Y++  R  
Sbjct: 984  DIDLNFTGEFQGVVHEEIRKLFGESHTFRAGTISKVAEKTAFGYVKS-----YAEQTR-- 1036

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                N P   V                          ++ +++ + R    H  GI+I  
Sbjct: 1037 ---QNIPQIFVEF------------------------LANRIKDVKRTTGQHPGGIIIIP 1069

Query: 537  RPLS--QLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +        P+     D  S    T F+ K I    ++KFD LG    T ++     L +
Sbjct: 1070 KQFDIFDFTPINYPANDQSSSWLTTHFDYKAIHD-NVLKFDILGHDNPTSIK-----LLE 1123

Query: 592  RGVKVDLSLIPFDDHETYHLLTTK---------------GTLGIFQLESSGMRQALEGMQ 636
            +   +++  +P +D     L ++                G +G+ +  +S +RQ L  ++
Sbjct: 1124 QYTGINIYDVPKNDESVIKLFSSTEPMGIKPDQISNEKTGAIGLPEFGTSFVRQMLNDIK 1183

Query: 637  PDCIEDIIALVSLYRPGPI-----DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            P  + D+I++  L     +     D +V+   RK    ++V     I PML         
Sbjct: 1184 PKTVADLISISGLSHGTNVWINNADELVLEKCRK--LNEVVCCRDDIMPML--------- 1232

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
               + +  + L  ++L E   +R+  G   +E         +    K+ +   +  ++ +
Sbjct: 1233 ---IAKGIEPLLSFTLMEK--VRKGKGLSNEE---------VGLLEKHNVPNWLIKSMQK 1278

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL--EMDNVE--------- 800
            +     +Y F K+HA AY  ++   AW K + P+ F A+  T   + D++E         
Sbjct: 1279 I-----EYLFPKAHATAYVTMALWIAWFKLYEPLAFYASYFTAHSKADDIENMIDKPNGI 1333

Query: 801  KIKKFCQD-------------------------ARQF---NIQIMPPSVNTPCVDFKVGD 832
            K+ K   +                         AR F   N+ I         +D + G 
Sbjct: 1334 KVSKRLYELKKTEDRSNKENDLIGVFEVAEELYARGFYISNVDIDKSQAEKWLIDKERG- 1392

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK-----LNR-RVLESLV 886
              +    + I+ +G+  A  I+ A A+K F S EDF  R    K     +NR ++L+SL 
Sbjct: 1393 -CLIPPFSTIESLGSVKANDIVNARAEKAFLSKEDFKIRTGVSKTVFDTMNRMKILDSLN 1451

Query: 887  FAGALDCF 894
             +  L  F
Sbjct: 1452 DSDQLTLF 1459


>gi|148377333|ref|YP_001256209.1| DNA polymerase III PolC [Mycoplasma agalactiae PG2]
 gi|148291379|emb|CAL58763.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae PG2]
          Length = 1459

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 133/668 (19%), Positives = 241/668 (36%), Gaps = 184/668 (27%)

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            ++R+D ELN I +  F   + I    ++ +      VG  RGS   S  A  + I++++P
Sbjct: 865  QKRIDSELNPIIKYGFDVIYWISYKLVKLSIDQGFIVG-SRGSIGSSFVASLIGISEVNP 923

Query: 398  L----------RF-------------------------------SLLFERFLNPDRMSMP 416
            L           F                               S+ FE FL  +   +P
Sbjct: 924  LVPHYCCPKCKHFEIANVSGITSGYDLPDKTCPQCHTKIKGDGQSIPFETFLGFNADKVP 983

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D++F  + +  V   +   +G     +  T   +  K A   V       Y++  R  
Sbjct: 984  DIDLNFTGEFQGVVHEEILKLFGESHTFRAGTISKVAEKTAFGYVKS-----YAEQTR-- 1036

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                N P   V                          ++ +++ + R    H  GI+I  
Sbjct: 1037 ---QNIPQIFVEF------------------------LANRIKDVKRTTGQHPGGIIIIP 1069

Query: 537  RPLS--QLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +        P+     D  S    T F+ K I    ++KFD LG    T ++     L +
Sbjct: 1070 KQFDIFDFTPINYPANDQSSSWLTTHFDYKAIHD-NVLKFDILGHDNPTSIK-----LLE 1123

Query: 592  RGVKVDLSLIPFDDHETYHLLTTK---------------GTLGIFQLESSGMRQALEGMQ 636
            +   +++  +P +D     L ++                G +G+ +  +S +RQ L  ++
Sbjct: 1124 QYTGINIYDVPKNDESVIKLFSSTEPMGIKPDQISNEKTGAIGLPEFGTSFVRQMLNDIK 1183

Query: 637  PDCIEDIIALVSLYRPGPI-----DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            P  + D+I++  L     +     D +V+   RK    ++V     I PML         
Sbjct: 1184 PKTVADLISISGLSHGTNVWINNADELVLEKGRK--LNEVVCCRDDIMPML--------- 1232

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
               + +  + L  ++L E   +R+  G   +E         +    K+ +   +  ++ +
Sbjct: 1233 ---IAKGIEPLMSFTLMEK--VRKGKGLSNEE---------VGLLEKHNVPDWLIKSMQK 1278

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL--EMDNVE--------- 800
            +     +Y F K+HA AY  ++   AW K + P+ F A+  T   + D++E         
Sbjct: 1279 I-----EYLFPKAHATAYVTMALWIAWFKLYEPLAFYASYFTAHSKADDIENMIDKPNGI 1333

Query: 801  KIKKFCQD-------------------------ARQF---NIQIMPPSVNTPCVDFKVGD 832
            K+ K   +                         AR F   N+ I         +D + G 
Sbjct: 1334 KVSKRLYELKKTEDRSNKENDLIGVFEVAEELYARGFYISNVDIDKSQAEKWLIDKERG- 1392

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK-----LNR-RVLESLV 886
              +    + I+ +G+  A  I+ A A+K F S EDF  R    K     +NR ++L+SL 
Sbjct: 1393 -CLIPPFSTIESLGSVKANDIVNARAEKAFLSKEDFKIRTGVSKTVFDTMNRMKILDSLN 1451

Query: 887  FAGALDCF 894
             +  L  F
Sbjct: 1452 DSDQLTLF 1459


>gi|260888664|ref|ZP_05899927.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC
           35185]
 gi|330839925|ref|YP_004414505.1| DNA polymerase III alpha subunit [Selenomonas sputigena ATCC 35185]
 gi|260861596|gb|EEX76096.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC
           35185]
 gi|329747689|gb|AEC01046.1| DNA polymerase III alpha subunit [Selenomonas sputigena ATCC 35185]
          Length = 831

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 168/412 (40%), Gaps = 66/412 (16%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH+  S +E  LS+  +L   AA    A+A+TD + +    +  + A   G++ I 
Sbjct: 18  VELSVHTQMSEMESVLSVRELLRTAAAWGWKAVAVTDHDVVQVFPDAMKIAARLGVKVIY 77

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS---RMYLLDQGKQS 128
           G    +  +D       GK   P    I +L    +G   L ELV+   R     Q    
Sbjct: 78  GMDGSMAQED-------GKESIPY--RISMLAKNKKGLLHLYELVTLSHRNVFHHQPHIP 128

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAF--------------FFNSSQVAEKRLLTF 174
            R+      E+  EGL++ + G+ G + RA               F++  ++       +
Sbjct: 129 KRV----FHEL-REGLLLGSAGAEGGLVRAIAAAKSDDEILAIANFYDYLEIQPAE--NY 181

Query: 175 KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
             L  D  +  +Q      R    ++V+++      LVAT +  +L+ ED     VL+  
Sbjct: 182 VGLIADETFSCIQSEEDV-RNIHRKIVEISKRTGKILVATGDVHYLNPEDAFCRRVLLNA 240

Query: 235 AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPIL 292
           A      +KD        +L+   EM+  FS L +  A E  +  + R + ++    P  
Sbjct: 241 A-----GKKDD-DTQSSRFLRTTEEMLQNFSHLGKEAAYEAVITGSNRIADLMDEIDPSY 294

Query: 293 PRFIEK--ECDDIQK----EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
            + + +     DI K    ++  EL  + +     R+ Q             +RL+ EL 
Sbjct: 295 EKCLPQIPHAHDIIKSMSYDKATELYGRNLP----RIVQ-------------ERLEQELA 337

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
           VI   ++S  +L+    +Q A ++   +    GS   S+ A+ + IT+++PL
Sbjct: 338 VILEHEYSSLYLLPQKLVQKAHEDG-HITCTNGSIGASLAAHLIGITEVNPL 388



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            +K + L    L+LL+K      +RG    LS IPFDD     L     T+GI +  S  
Sbjct: 569 FLKLNLLRYFVLSLLEK-----LERGTGCSLSNIPFDDPSAISLFRKADTVGIPEFHSPK 623

Query: 628 MRQALEGMQPDCIEDIIAL 646
           +RQ L+ +QP    +++ +
Sbjct: 624 VRQMLQELQPRFFSELVKI 642


>gi|257487765|ref|ZP_05641806.1| error-prone DNA polymerase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 218

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 97/247 (39%), Gaps = 49/247 (19%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +  +  L   S++S   GA S   + ++       A+AITD   L   +   Q + + G+
Sbjct: 2   TSEYAELHCLSNFSFQRGASSARELFERALRHGYQALAITDECTLAGIVRAWQASISTGL 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS---------- 117
             IIG ++ I+                  P  VLLV +  GY+ L +L++          
Sbjct: 62  PLIIGSEMHIE----------------NGPKAVLLVESQTGYEALCKLITVARRRARKGE 105

Query: 118 -RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            R+   D       +   WL EI  +    L  G                   R L  ++
Sbjct: 106 YRLLREDFEPSPDGLLAIWLPEIEGDAQACLAHG-------------------RWL--RE 144

Query: 177 LFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F +RL++ ++ HRG  D  R + ++ LA +  +P VA+ +    +       D + A+ 
Sbjct: 145 RFAERLWLGVELHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIR 204

Query: 236 HSTVVSQ 242
           H T V++
Sbjct: 205 HHTTVAE 211


>gi|325001989|ref|ZP_08123101.1| error-prone DNA polymerase [Pseudonocardia sp. P1]
          Length = 638

 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 11/152 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS +S L+GA +   ++++ A     AIA+TD + ++  + F++ A A GI+ +
Sbjct: 64  YAELHCHSHFSFLDGASAPEELVERAAELGLEAIALTDHDGMYGVVRFAEAARALGIRTV 123

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L + +        Q     P    ++LL    +GY+ L   +S   +  +G +  R
Sbjct: 124 FGAELSLGLS-----APQNGVADPEGEHLLLLARGPDGYRALCRTISTAQM--RGGEKGR 176

Query: 131 ICLSWLQEI--GTEG-LIMLTGGSSGPIDRAF 159
                L E+   T G +++LTG   G + RA 
Sbjct: 177 PVYD-LDEVVADTAGRVVVLTGCRKGAVRRAL 207


>gi|295091740|emb|CBK77847.1| hypothetical protein [Clostridium cf. saccharolyticum K10]
          Length = 179

 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 34/145 (23%)

Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE------------------------- 795
           F K+HAAAY +++++ A+ K  YP+ + AA  ++                          
Sbjct: 2   FPKAHAAAYVMMAWRIAYCKVFYPLAYYAAFFSIRASGFSYELMCQGREKLEYHLADYKK 61

Query: 796 -MDNVEKIK-------KFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVG 846
            +D + K +       +  Q+      + MP  +      +F++ D ++  SL++I G+G
Sbjct: 62  RLDTLSKKEQDTLRDMRIVQEMYARGFEFMPIDIYRASARNFQIIDGKLMPSLSSIDGLG 121

Query: 847 TTTARHIMEASADKPFDSLEDFCSR 871
              A  I+ A+ D PF S EDF +R
Sbjct: 122 EKAADGIVFAAEDGPFLSKEDFINR 146


>gi|167717944|ref|ZP_02401180.1| error-prone DNA polymerase [Burkholderia pseudomallei DM98]
          Length = 131

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            ++G    +   D       G  P P    +VLL    EGY  L EL+S
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELIS 113


>gi|57867461|ref|YP_189103.1| DNA polymerase III, alpha subunit, truncation [Staphylococcus
           epidermidis RP62A]
 gi|57638119|gb|AAW54907.1| DNA polymerase III, alpha subunit, truncation [Staphylococcus
           epidermidis RP62A]
          Length = 482

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 108/480 (22%), Positives = 185/480 (38%), Gaps = 98/480 (20%)

Query: 18  SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDI 77
           S++ +++   S   +L   +      +AIT+  +L SA++  Q+  +   Q I+     +
Sbjct: 15  SNFRIIDAITSPKELLTTASKLGYNGLAITEHESLSSAVQMIQELKSLKEQNIVDESFKL 74

Query: 78  DMQDNLKMTNQ-----------GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY------ 120
            + + + + +            G T FP     +L+    +G++ L +L S  +      
Sbjct: 75  VLGNEIYLVDSLEEVRDNYVGGGVTKFP---HFILMAKNRKGFEALSKLSSEAWKNSFFT 131

Query: 121 -LLDQGKQSVRICLSWLQEIGTEGLIMLTG---GSSGPI-------------DRAFFFNS 163
            L+++   +     S       +G IM T    GSS  I                   N 
Sbjct: 132 GLMERTPTTKDFLRSVATSEEYKGTIMATTACIGSSVNIQLQKMKAAEENGSSSEEIANC 191

Query: 164 SQVAEKRLLTFKKLFG-DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLS 221
              A K L    + FG D  YV LQ      + Y    +V LA    L  +  N++ +  
Sbjct: 192 YNAARKELHWCIETFGKDDFYVELQPAESEVQIYCNKHLVNLANETGLKCIVANDTHYAR 251

Query: 222 EEDYEAHDVLMAVAHSTVVSQKDRPRVTPD-------HYLKNRSEMVSIFSD--LPEALE 272
            ED + H V +        + K+  R   +       H +    + +S  S+  + EA++
Sbjct: 252 PEDRDVHRVFL--------NSKEGDREVDEFYYYCYMHSIDEMKKQMSYLSEEIIEEAIK 303

Query: 273 NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE--VRLAQG---- 326
           NT +I  +       H  I+P+        I + E + + +KA    E    LA      
Sbjct: 304 NTEKIYDKVEVYDINHTSIIPK------STIPEFELSHIFSKAYDTYEHIKYLANSDKVD 357

Query: 327 ------AIAKGYHAQ---------DYRQ---RLDFELNVIARMK------FSGYFLIVAD 362
                  I KGY  +         ++ Q   R+D EL+ I  +        S Y+L   +
Sbjct: 358 DQYLLYLIEKGYFKELHYKGIGRKEFHQILKRIDDELSEIIGISHKLNQTMSSYYLTCRE 417

Query: 363 FIQWAKKN-----NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL-FERFLNPDRMSMP 416
            +    K+     N  VG GRGSGAG +  Y L IT I+PL+++ L   R L  +R  +P
Sbjct: 418 IVNIMWKDDECGGNSLVGSGRGSGAGFLLNYLLGITQINPLKYNNLPHWRHLTKERPELP 477


>gi|222083244|ref|YP_002542647.1| DNA polymerase III alpha chain [Agrobacterium vitis S4]
 gi|221738624|gb|ACM39462.1| DNA polymerase III alpha chain [Agrobacterium vitis S4]
          Length = 363

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 98/252 (38%), Gaps = 23/252 (9%)

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---CVD 827
            +I+Y ++W+K  +P  F AA +  +        +  +DA++ ++ I P  +N     C  
Sbjct: 7    LIAYASSWLKCWHPDVFCAALLNAQPMGFYAPAQIVRDAQKHHVVIRPVCINASRWDCTL 66

Query: 828  FKVGDNRIYYSLA--AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                D R    L    +KG+       I+ A  D+PF+S++D   R +          SL
Sbjct: 67   EPTEDGRFAVRLGFRMVKGLANKHGAAIVAAREDQPFESIDDLWRRANVPS------ASL 120

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKI-TL 940
            V     D F          L   ++ A W  +   ++   +F    A E+    + I  +
Sbjct: 121  VQLAEADAFQ-------PGLKLARREALWAIEALRDEPLPLFAAAAAREQAVIPEAIEPV 173

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                   S      +   +G     HPL   +  L K  I   E+++    G  +  A +
Sbjct: 174  VALKPMTSGGEVVEDYSHVGLTLRAHPLSFLRNDLTKRRIVTCEDAMNARDGKWLEAAGL 233

Query: 1001 VVSKQQKKTRKG 1012
            V+ +Q+  + KG
Sbjct: 234  VLVRQRPGSAKG 245


>gi|289450465|ref|YP_003475243.1| DNA polymerase III subunit alpha, Gram-positive type [Clostridiales
            genomosp. BVAB3 str. UPII9-5]
 gi|289185012|gb|ADC91437.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridiales
            genomosp. BVAB3 str. UPII9-5]
          Length = 1495

 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 134/674 (19%), Positives = 250/674 (37%), Gaps = 146/674 (21%)

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            V+ LA   ++ +VAT +S FL++ED     +L+      V  ++      P+ Y +N  E
Sbjct: 770  VIHLAELTKMRVVATCDSHFLNKEDGIFRHILLTNIGYDVNERQ------PELYFRNTDE 823

Query: 260  MVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
            M++ F+ L   +A E  V   R  + +++   P +  F +     +    + ++      
Sbjct: 824  MLAEFTYLSPDKAKEFCVTNPRYFASLVE---PNIRPFPDGTFPPLIASADKDIETMTYR 880

Query: 318  GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
                R ++    +G   +   +R++ ELN I +  F+  + I    ++ +  +   VG  
Sbjct: 881  ----RASELYEYQGKLPEIVSKRIEKELNSIIKNGFAIMYYIAHKLVKKSNDDGYIVG-S 935

Query: 378  RGSGAGSVTAYALTITDIDPL---------RFS--------------------------- 401
            RGS   S  A    IT+++PL         R+S                           
Sbjct: 936  RGSVGSSFVATLCGITEVNPLCPHYRCPHCRYSRFDESGKFGSGFDLPPEKCPDCGEMMI 995

Query: 402  -----LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
                 + FE FL  +    PD D++F    +    +Y+Q  +G     +  T G    K 
Sbjct: 996  RDGQDIPFETFLGFNGDKQPDIDLNFSGVYQPHAHKYIQEMFGIAHTYRAGTIGCFAEKN 1055

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            AL  V + L+     ++R                         + RLA            
Sbjct: 1056 ALGMVRKYLEDTGEVINRA-----------------------GQQRLA-----------A 1081

Query: 517  KLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKF 571
             ++G+ R    H  GIV+   +R +    P+      + S +  T F+   +    ++K 
Sbjct: 1082 GMDGVKRTTGQHPGGIVVIPKEREVFDFTPIQYPADKLDSVMTTTHFDFNSLHDT-ILKL 1140

Query: 572  DFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGT 617
            D LG    T+L+   D       K+ ++ IP  D +   +  +                T
Sbjct: 1141 DILGHDDPTMLKVLSDM-----TKIKVTDIPIPDEKVMRMFVSTEPLGIPDGTSPADSAT 1195

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            LG+ ++ +   R  ++  +P    D++ L+ L     +        + N ++       L
Sbjct: 1196 LGLPEMGTFMARGMIKETKPSRFYDLVQLMGLSHGTDV-------WKGNAQD-------L 1241

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA-MGKKIKEEMDK-QKERFISG 735
            I   +     VI  ++ +M         + S  D++ +   GK + EE +   +E  +  
Sbjct: 1242 IHQGICTINEVIGCRDGIMTRLIYYGLPAKSSFDIMEKVRKGKGLSEEHEALMREHNVPD 1301

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
               +   K               Y F K+HAAAYA+ + + AW K +YP  + +A  T+ 
Sbjct: 1302 WYIDSCKKI-------------KYMFPKAHAAAYAISALRIAWFKVYYPEAYYSAYFTVR 1348

Query: 796  MDNVEKIKKFCQDA 809
             D  +     C DA
Sbjct: 1349 ADEFDS-DILCVDA 1361


>gi|169835977|ref|ZP_02869165.1| DNA polymerase III, alpha chain [candidate division TM7 single-cell
           isolate TM7a]
          Length = 52

 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 33/45 (73%)

Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
           P ++  LK T G+++YQEQ MQI++   G++  +AD LR+A+GK+
Sbjct: 1   PGMENSLKNTYGILVYQEQFMQISKEWCGFTGGQADTLRKAVGKR 45


>gi|197294585|ref|YP_001799126.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
            australiense]
 gi|171853912|emb|CAM11875.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
            australiense]
          Length = 1530

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 105/261 (40%), Gaps = 56/261 (21%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  +    PD D++F  D + +   Y++N  G +   +  T  ++  + A      
Sbjct: 1028 FETFLGFEGNKTPDIDLNFAGDYQIKAHNYIKNLIGEKHAFRAGTIQTIAKRNA------ 1081

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
                 Y  V    +               + +  +R+ +++        +I+ K+EG+ R
Sbjct: 1082 -----YGYVKGFVE---------------SANKNWRKQKIS--------QITTKIEGVKR 1113

Query: 524  HASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                H  GIVI   +R + ++ P+     D  S+   T F+    E   L K D LG   
Sbjct: 1114 STGQHPGGIVIVPPNRSIYEITPIQFPANDTNSEWKTTHFDYHSFEN-NLFKLDILGHDD 1172

Query: 579  LTLLQKSLDFLAQRGVKVDLSL---IPFDDHETYHLLT-------------TKGTLGIFQ 622
              +++  +D + +   K        IP DD E Y L +             T  +LGI +
Sbjct: 1173 PMMIKFLMDCVKKNPNKFAFKKAQEIPLDDPEVYKLFSEDMKITSAQNETITIDSLGIPE 1232

Query: 623  LESSGMRQALEGMQPDCIEDI 643
              ++ ++Q L+ ++ +  ++I
Sbjct: 1233 FGTTFVKQMLKDIKKNHKKNI 1253


>gi|86741555|ref|YP_481955.1| phosphoesterase PHP-like protein [Frankia sp. CcI3]
 gi|86568417|gb|ABD12226.1| Phosphoesterase PHP-like [Frankia sp. CcI3]
          Length = 59

 Score = 47.4 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 31/43 (72%)

Query: 32 ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
          +L ++   Q PA+AITD   ++ A +F ++A AAG++PIIGC+
Sbjct: 1  MLKEVFRQQMPAVAITDHGYMYGAYDFHKQATAAGVKPIIGCE 43


>gi|323705405|ref|ZP_08116980.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
            xylanolyticum LX-11]
 gi|323535307|gb|EGB25083.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
            xylanolyticum LX-11]
          Length = 1410

 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 36/166 (21%)

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE--------MDNVEKIKKFCQ--D 808
            Y F K+HA AY +++++ A+ K H+P  F A   T+         MD++EKIK+  +  +
Sbjct: 1236 YMFPKAHAVAYVIMAFRIAYFKVHHPEAFYATYFTVRADEFNLDMMDSLEKIKENIRLIE 1295

Query: 809  ARQFNIQIMPPSVNT-----------------------PCVDFKVGDNRIYYSLAAIKGV 845
            ++  N      S+ T                         V F +  + I   L +++G+
Sbjct: 1296 SKSNNATAKEKSLLTILEVGLEMYLRGLKFTNIDLYKSDAVKFLITKDGILPPLNSLEGI 1355

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            G   A+ I E      F S+ED  +R    ++++ V++ L   G L
Sbjct: 1356 GKQAAKIIAEEREKGKFLSIEDLRNRT---RISKTVIDILKQHGCL 1398


>gi|298251234|ref|ZP_06975037.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297545826|gb|EFH79694.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 94

 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 7  KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
          +SP F HL VH+ YSLL+G   +  ++ +        +AITD   ++ AL+F  KAC A 
Sbjct: 5  RSPDFAHLHVHTEYSLLDGFSRIKTLVKQTKELGMKHLAITDHGAMYGALKF-YKACKAN 63

Query: 67 -IQP 69
           I+P
Sbjct: 64 DIRP 67


>gi|319937397|ref|ZP_08011804.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1]
 gi|319807763|gb|EFW04356.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1]
          Length = 1438

 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 128/658 (19%), Positives = 234/658 (35%), Gaps = 142/658 (21%)

Query: 211  LVATNNSLFLSEEDYEAHDV--------LMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMV 261
            +VAT +  +L ++D    DV        L    H   ++ ++ P   TPD YL+   EM+
Sbjct: 707  IVATGDVHYLDQKDKIFRDVFTCNPKIGLGGTLHP--LTDRNNPSAWTPDEYLRTTQEMM 764

Query: 262  SIFSDLPE------ALENTVEIARRCSFILQV-HAPILPRFIE-------KECDDIQKEE 307
                 L +       +ENT +IA        V H  +    I+       K C D   ++
Sbjct: 765  DSLPYLTDDEKYEYVVENTNKIADMIDGSFHVVHDKLFTPHIDNADENLRKLCFDNAHKQ 824

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              E+    V                      +RL  EL+ I +  F   + I    ++ +
Sbjct: 825  YGEVLPDIV---------------------EKRLTKELDNIIKHGFGVIYYIAHKLVKKS 863

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------------- 398
             +    VG  RGS   S  A    I++++PL                             
Sbjct: 864  NEAGYLVG-SRGSVGSSFVATMAEISEVNPLPPHYYCPNCQYNEFLPDGFIANGFDLPNK 922

Query: 399  ------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                          ++ FE FL  +   +PD D++F  D +     Y +  +G   V + 
Sbjct: 923  VCPKCGKPLKGDGHNIPFETFLGFNADKVPDIDLNFSGDYQPTAHAYTKEIFGESHVYRA 982

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T  ++  K A           Y       +L+                   RE  +   
Sbjct: 983  GTISTVAEKTA-----------YGYARGYAELMG------------------RENSIRTA 1013

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMK 561
             ++R   I++   G+ R    H  GI++   +  +    P      D+ ++   T F+  
Sbjct: 1014 ELER---IAKGCTGVKRTTGQHPGGIIVIPENMDVYDFTPYQYPADDLSAEWKTTHFDFH 1070

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I    ++KFD LG    T+++     + Q    +D   IP +D E   L  +   L I 
Sbjct: 1071 AIHD-NVLKFDILGHVDPTVIR-----MLQDLTGIDPKDIPTNDPEVMSLFNSTEALKI- 1123

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
             L     +    G+     + +  ++    P    ++V+ +   +G +  + +   LI  
Sbjct: 1124 DLGYLNCKTGALGLPEFGTKFVRGMLEQTHPTSFSDLVILSGLSHGTDVYLGNAETLISS 1183

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEA-DVLRRAMGKKIKEEMDKQKERFISGASKN 739
                 + VI  ++ +M +  +  G    +A D++     +K K  +   ++++     +N
Sbjct: 1184 GTCTLKEVIGCRDDIM-VYLIEKGLPNKDAFDIMECV--RKGKSPVVFPEKKYEELMREN 1240

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             +      +      K   Y F K+HAAAY + + + AW K +YP E+ A   T   D
Sbjct: 1241 DVPTWYIES-----CKKIKYMFPKAHAAAYVLSAVRVAWWKLYYPREYYAVYFTTRCD 1293


>gi|288549238|gb|ADC52798.1| putative cytoplasmic protein [Streptomyces platensis]
          Length = 281

 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 6/158 (3%)

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            +ESL+ AG  D   +SR  L    ++       V+K  +   +++FA   G  S      
Sbjct: 1    MESLIKAGTFDSLQHSRKGLTAIHEDAIDAVIPVKKAASFGQDDLFADLGGEGSSVAPFG 60

Query: 942  -KFSVENSSV----RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI 995
              F+++++          E+ +LG Y S HPLD  + IL         E +A+ R   ++
Sbjct: 61   LDFAIDDTEWPRRQLLATERDMLGLYVSAHPLDGAEHILSGARDCSIAELLASGRTTGDV 120

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +L+ ++   Q K T++G+    V   +     E  FFP
Sbjct: 121  QLSGLITGIQLKMTKQGNAWAIVNLVDRDAGIEVLFFP 158


>gi|325524834|gb|EGD02791.1| error-prone DNA polymerase [Burkholderia sp. TJI49]
          Length = 266

 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 4/109 (3%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  L   S++S L GA     ++++        +AITD  +L  A      A AAG+ 
Sbjct: 9   PAYAELFCRSNFSFLHGASHAEELVERAVKLGYRGLAITDECSLAGAPRMHVAAQAAGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            IIG   ++   +       G  P P    +VLL    EGY  L EL+S
Sbjct: 69  LIIGSYFEVTPDE----APPGHDPGPGAFGLVLLAQNREGYGNLSELIS 113


>gi|309798624|ref|ZP_07692897.1| DNA polymerase III subunit alpha [Streptococcus infantis SK1302]
 gi|308117766|gb|EFO55169.1| DNA polymerase III subunit alpha [Streptococcus infantis SK1302]
          Length = 157

 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
           DA +   ++ P S+NT     K+ +  IY  L +IKG+    A  I+E   ++PF S+ED
Sbjct: 12  DALEMGFELTPLSLNTIPYQDKLTEKTIYLGLKSIKGMPRDFAYWILE---NRPFSSVED 68

Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCF 894
           F +R+        +L  LV  G  D F
Sbjct: 69  FVTRLPKNYQKLSLLTPLVEIGLFDSF 95


>gi|213026945|ref|ZP_03341392.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 98

 Score = 46.6 bits (109), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 99  IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
           + +L +   GYQ L  L+S+ Y    G     I   WL E+  EGLI+L+GG  G + R 
Sbjct: 11  LTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRC 69

Query: 159 FFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               +  + E+ +  ++  F DR ++ L
Sbjct: 70  LLRGNQALVEECVAFYEAHFPDRYFLEL 97


>gi|39938951|ref|NP_950717.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
 gi|39722060|dbj|BAD04550.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
          Length = 1571

 Score = 45.8 bits (107), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 46/229 (20%)

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  +    PD D++F  D + +   Y++   G +   +    G++Q  A     G 
Sbjct: 1059 FETFLGFEGNKTPDIDLNFAGDYQSQAHNYIKELLGEKHAFRA---GTIQTVAQRNAYGY 1115

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             +                                F E +       ++ +I+ K+EG+ R
Sbjct: 1116 TM-------------------------------GFVEEKQKQWRKQKVAQIANKIEGVKR 1144

Query: 524  HASTHAAGIVI--GDRPLSQLVPM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
                H  GIV+   DR + ++ P+ Y    ++   T F+    E+  L K D LG     
Sbjct: 1145 SNGQHPGGIVVVPPDRSIYEVTPVQYPANDTNWKTTHFDYHSFEQ-NLFKLDILGHDDPM 1203

Query: 581  LLQKSLDFLAQRGVKVDLSL---IPFDDHETYHLLTTKGTLGIFQLESS 626
            +++  +D++ +       +    IP DD E Y L + +     F+++SS
Sbjct: 1204 MIKFLMDYVKENRRIFPFTRAQDIPVDDPEVYKLFSNE-----FKIDSS 1247


>gi|330880636|gb|EGH14785.1| error-prone DNA polymerase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 199

 Score = 45.8 bits (107), Expect = 0.039,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 49/221 (22%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +  +  L   S++S   GA S   + ++ +     A+AITD   L   +   Q + + G+
Sbjct: 2   TSEYAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASISTGL 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS---------- 117
             IIG ++ I+                  P  VLLV +  GY+ L +L++          
Sbjct: 62  PLIIGSEMHIE----------------NGPKAVLLVESQTGYEALCKLITVARRRARKGE 105

Query: 118 -RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            R+   D    S  +   WL +I  +    L  G                   R L  ++
Sbjct: 106 YRLLREDFEPSSDGLLAIWLPDIEGDAQACLAHG-------------------RWL--RE 144

Query: 177 LFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNN 216
            F +RL++ ++ HRG  D  R + ++ LA +  +P VA+ +
Sbjct: 145 RFAERLWLGVELHRGADDEQRLADLLALAQSLGIPAVASGD 185


>gi|289609092|emb|CBI60500.1| unnamed protein product [Sordaria macrospora]
          Length = 78

 Score = 45.8 bits (107), Expect = 0.040,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 696 MQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
           M++A + + +S  EA+ LRRAM   +    + K +E+ I G ++ G     A   F  + 
Sbjct: 1   MKLAIVAADFSPGEANELRRAMATFRNPGTIQKLREKLIEGMTRRGYEPDFAERCFRQIE 60

Query: 755 KFADYGFNKSHAAAYA 770
            F  YGF +SHA ++A
Sbjct: 61  GFGSYGFPESHALSFA 76


>gi|270661252|ref|ZP_06222402.1| DNA polymerase III, alpha subunit [Haemophilus influenzae HK1212]
 gi|270316901|gb|EFA28605.1| DNA polymerase III, alpha subunit [Haemophilus influenzae HK1212]
          Length = 115

 Score = 45.4 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 38/66 (57%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1  MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65 AGIQPI 70
          +G++PI
Sbjct: 61 SGMKPI 66


>gi|255523926|ref|ZP_05390889.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|296185167|ref|ZP_06853577.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            carboxidivorans P7]
 gi|255512357|gb|EET88634.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|296050001|gb|EFG89425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            carboxidivorans P7]
          Length = 1449

 Score = 45.4 bits (106), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 37/167 (22%)

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQDA 809
            Y F K+HAAAY +++++ AW K H P  + AA  T+   +          EK+++  ++ 
Sbjct: 1271 YMFPKAHAAAYVMMAFRIAWFKVHIPKAYYAAYFTIRAKSFDSEFMIFGKEKVREKMKEI 1330

Query: 810  RQFNIQIMPPSVN-------------------------TPCVDFKVGDNRIYYSLAAIKG 844
                 Q  P   +                         +    F V +  +   + +I G
Sbjct: 1331 EMMGNQATPKDKDMYDDLEIVLEMYERGFKFLPIDLYKSNATKFIVEEEGLRPPINSISG 1390

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +G   A  I  A+ ++ F S+ED   R    K+    +E L   G L
Sbjct: 1391 MGNVAAEGIYNAAKEETFSSIEDVKKR---SKIGNSAIELLKKFGCL 1434


>gi|218680309|ref|ZP_03528206.1| DNA polymerase III, alpha subunit [Rhizobium etli CIAT 894]
          Length = 179

 Score = 45.1 bits (105), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 82/205 (40%), Gaps = 30/205 (14%)

Query: 8   SPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           SP+ +  LQV S +S L GA S   +  + A     A+A+ D N+L   +   + A   G
Sbjct: 3   SPARYAELQVTSHFSFLRGASSCEEMFAQAAIQGIEAVAVVDRNSLAGIVRAFEAAKTTG 62

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ I+GC+L  D+ D                SI++  +    Y RL  L+S   L  +  
Sbjct: 63  VRLIVGCRL--DLADG--------------ASILVYPTDRAAYGRLCRLLS---LGKKRG 103

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              +  L W           L   S G I       + +    RL   +   GDR Y+ L
Sbjct: 104 GKAKCILEWAD---------LVAYSDGLIGILVPDEADETCGLRLRRLRDTLGDRAYLAL 154

Query: 187 Q-RHRGYDRYRESQVVQLAYTHELP 210
             R R  D+ R  ++  LA    +P
Sbjct: 155 TLRRRPNDQLRVHKLSNLAAQMRVP 179


>gi|146320383|ref|YP_001200094.1| DNA polymerase III, alpha subunit [Streptococcus suis 98HAH33]
 gi|145691189|gb|ABP91694.1| DNA polymerase III, alpha subunit [Streptococcus suis 98HAH33]
          Length = 234

 Score = 44.7 bits (104), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 13/104 (12%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L   + Y+ ++  +++ + + +       A+ I D N+L++A  F +     G+QPIIG
Sbjct: 4   QLDTKTVYTFMDSMVTIESYVGRGKELGYHALGIMDKNSLYAAYSFMESCNKMGLQPIIG 63

Query: 73  CQLDIDMQ-DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
           C+LD  +Q +   +T Q            L+  T  GY+ L+++
Sbjct: 64  CELDWKLQGEEQDITTQ------------LIALTTRGYRNLLKI 95


>gi|330950664|gb|EGH50924.1| DNA polymerase III subunit alpha [Pseudomonas syringae Cit 7]
          Length = 230

 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 45/85 (52%), Gaps = 6/85 (7%)

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKK 1008
            R   E+  LG Y +GHP+D Y+  +R+       + +  ++   +   +A ++++ +  K
Sbjct: 23   RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRIIDLKPARDTQTVAGLIIALRVMK 78

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
             +KG ++G++T  + +   EA+ F 
Sbjct: 79   NKKGDKMGFITLDDRSARIEASLFA 103


>gi|258614448|ref|ZP_05712218.1| DNA polymerase III, alpha subunit [Enterococcus faecium DO]
          Length = 85

 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 37/73 (50%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3  FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71 IGCQLDIDMQDNL 83
          IG  L    ++ +
Sbjct: 63 IGLHLSYTYEEKI 75


>gi|312602648|ref|YP_004022493.1| DNA polymerase III subunit alpha [Burkholderia rhizoxinica HKI 454]
 gi|312169962|emb|CBW76974.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia
           rhizoxinica HKI 454]
          Length = 153

 Score = 44.3 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 43/83 (51%)

Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
           +++   ++  L G  RH S H+ G VI     S+LVP+      D  V Q++   I+   
Sbjct: 50  IEQWATLAATLLGFPRHLSQHSGGFVISRGKPSRLVPIESAAMPDRSVIQWDKNDIDALE 109

Query: 568 LIKFDFLGLKTLTLLQKSLDFLA 590
           L+K D L L  L +++++L  +A
Sbjct: 110 LLKIDILALGMLPVIRRALALVA 132


>gi|213585447|ref|ZP_03367273.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 38

 Score = 44.3 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           F  + DF  ++D  K+NRR LESL+ AGA D FG++
Sbjct: 3   FKDINDFLGKIDPTKINRRTLESLIKAGAFDEFGFT 38


>gi|239992083|ref|ZP_04712747.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL
          11379]
          Length = 59

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%)

Query: 9  PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
          P F HL VH+ YSLL+GA    ++ +         IA+TD  NL  A +F   A
Sbjct: 4  PPFTHLHVHTQYSLLDGAARFTDMFESANKMGMTHIAMTDHGNLHGAYDFFHSA 57


>gi|309808831|ref|ZP_07702716.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
 gi|308167957|gb|EFO70090.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
          Length = 946

 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 106/244 (43%), Gaps = 47/244 (19%)

Query: 209 LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL- 267
           +P+VAT+++ ++ ++D     +L++   +     + +    PD +     EM+  FS L 
Sbjct: 715 IPVVATSDAHYIDKKDAIYRKILLSAQKAN----RGKNYELPDLHFYTTQEMLDAFSFLD 770

Query: 268 PE-----ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAVAGL 319
           P+      ++NT  IA +   +  + + + P  IE   KE + +  ++ +EL    +  +
Sbjct: 771 PKIAEEIVIKNTNMIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKI 830

Query: 320 EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                             + RL++EL  I    ++  +LI    +  + K+   VG  RG
Sbjct: 831 -----------------VKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRG 872

Query: 380 SGAGSVTAYALTITDIDPL---------RFSLLFER------FLNPDRMSMPDFDIDFCQ 424
           S   S+ A    IT+++PL         ++S  FE+      +  PD+   P  + D  +
Sbjct: 873 SVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDK-KCPKCNADLAK 931

Query: 425 DRRD 428
           D +D
Sbjct: 932 DGQD 935


>gi|324327715|gb|ADY22975.1| DNA polymerase III subunit alpha, Gram-positive type [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 970

 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 141/322 (43%), Gaps = 46/322 (14%)

Query: 97  PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607 PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156 DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
             A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665 FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209 LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
            P+VAT N  +L+ ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725 KPVVATGNVHYLNPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269 E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
           E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 782 EDVAREIVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321 VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822 TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377 GRGSGAGSVTAYALTITDIDPL 398
            RGS   S  A  + IT+++PL
Sbjct: 881 SRGSVGSSFVATMMEITEVNPL 902


>gi|288919036|ref|ZP_06413377.1| DNA polymerase III alpha subunit-like protein [Frankia sp. EUN1f]
 gi|288349576|gb|EFC83812.1| DNA polymerase III alpha subunit-like protein [Frankia sp. EUN1f]
          Length = 190

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 66/169 (39%), Gaps = 20/169 (11%)

Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK---------------LFG-DRLYVNL-QR 188
           +LTG   G + RA       V  +R +   +               LFG + + V L  R
Sbjct: 18  ILTGCRKGAVPRALAAGEPAVEHERGMAVAERGVDAARRALDELVGLFGRENVAVELWDR 77

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD--RP 246
               D  R   + +LA    LP+VAT N  F +         + AV     + + D   P
Sbjct: 78  AAPLDSARNDALAELARDAGLPVVATGNVHFATPASARLAATMAAVRARRSLDEMDGWLP 137

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                H L++  EM + F   P A++    I   C+F L + AP LP F
Sbjct: 138 AAGTAH-LRSGPEMAARFGRYPGAVDAAARIGAECAFGLDLVAPRLPDF 185


>gi|293560685|ref|ZP_06677169.1| DNA polymerase III subunit alpha [Enterococcus faecium E1162]
 gi|291605359|gb|EFF34809.1| DNA polymerase III subunit alpha [Enterococcus faecium E1162]
          Length = 85

 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 36/73 (49%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3  FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71 IGCQLDIDMQDNL 83
          IG  L    +  +
Sbjct: 63 IGLHLSYTYEKKI 75


>gi|309800242|ref|ZP_07694420.1| DNA polymerase III subunit alpha [Streptococcus infantis SK1302]
 gi|308116134|gb|EFO53632.1| DNA polymerase III subunit alpha [Streptococcus infantis SK1302]
          Length = 100

 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 38/70 (54%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L   + YS +E  +S+   +D+  A    A+ I D +NL+ A  F ++    GIQP++G 
Sbjct: 5  LDTKTVYSFMESMISIQKYVDQGKAYGYSALGIMDIDNLYGAYYFIKECQKQGIQPLLGL 64

Query: 74 QLDIDMQDNL 83
          ++ +  ++ L
Sbjct: 65 EVTVHHKEEL 74


>gi|196044660|ref|ZP_03111895.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225865799|ref|YP_002751177.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|229186057|ref|ZP_04313227.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
 gi|196024695|gb|EDX63367.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225786021|gb|ACO26238.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|228597476|gb|EEK55126.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
          Length = 970

 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 140/322 (43%), Gaps = 46/322 (14%)

Query: 97  PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607 PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156 DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
             A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665 FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209 LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
            P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725 KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269 E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
           E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 782 EDVAKEIVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321 VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822 TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377 GRGSGAGSVTAYALTITDIDPL 398
            RGS   S  A  + IT+++PL
Sbjct: 881 SRGSVGSSFVATMMEITEVNPL 902


>gi|42782909|ref|NP_980156.1| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987]
 gi|42738836|gb|AAS42764.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus ATCC 10987]
          Length = 970

 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 140/322 (43%), Gaps = 46/322 (14%)

Query: 97  PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 607 PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 664

Query: 156 DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
             A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 665 FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 724

Query: 209 LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
            P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 725 KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 781

Query: 269 E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
           E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 782 EDVAKEIVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 821

Query: 321 VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 822 TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 880

Query: 377 GRGSGAGSVTAYALTITDIDPL 398
            RGS   S  A  + IT+++PL
Sbjct: 881 SRGSVGSSFVATMMEITEVNPL 902


>gi|118479040|ref|YP_896191.1| DNA polymerase III, subunit alpha [Bacillus thuringiensis str. Al
           Hakam]
 gi|118418265|gb|ABK86684.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
           Hakam]
          Length = 972

 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 140/322 (43%), Gaps = 46/322 (14%)

Query: 97  PSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           PS + L++T++ G + L +LVS  +L +   +  R+  S L++   EG+++ T    G +
Sbjct: 609 PSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEV 666

Query: 156 DRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
             A    + +  E+    +        ++    +   L R  G  +   S +V+L  T +
Sbjct: 667 FEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLD 726

Query: 209 LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
            P+VAT N  +L  ED     +L  V+     +  +R  + P H+ +   EM+  FS L 
Sbjct: 727 KPVVATGNVHYLDPEDAMYRKIL--VSSQGGANPLNRHSLPPVHF-RTTDEMLECFSFLG 783

Query: 269 E------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL--E 320
           E       + NT +IA   S I  VH P+                +++L    + G   E
Sbjct: 784 EDVAKEIVVTNTQKIA---SLIGDVH-PV----------------KDDLYTPKIEGADDE 823

Query: 321 VRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            R     +A+  + ++  +    RL+ EL  I    F+  +LI    ++ +  +   VG 
Sbjct: 824 TRDMSYKMARSIYGEELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG- 882

Query: 377 GRGSGAGSVTAYALTITDIDPL 398
            RGS   S  A  + IT+++PL
Sbjct: 883 SRGSVGSSFVATMMEITEVNPL 904


>gi|169842053|ref|ZP_02875158.1| DNA polymerase III alpha subunit [candidate division TM7
           single-cell isolate TM7a]
          Length = 54

 Score = 43.1 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/29 (62%), Positives = 22/29 (75%)

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAK 368
           RLD EL+V+  M ++GYFLIV DFI W K
Sbjct: 25  RLDMELSVLDNMGYNGYFLIVQDFINWGK 53


>gi|169836436|ref|ZP_02869624.1| DNA polymerase III subunit alpha [candidate division TM7
           single-cell isolate TM7a]
          Length = 32

 Score = 43.1 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 23/30 (76%)

Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
           +HAA Y +I+Y TA++K HYP  F+AA MT
Sbjct: 1   THAACYGLIAYWTAYLKAHYPDAFMAALMT 30


>gi|171463058|ref|YP_001797171.1| bis(5'nucleosyl)-tetraphosphatase, ApaH [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192596|gb|ACB43557.1| bis(5'nucleosyl)-tetraphosphatase, ApaH [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 279

 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 8/126 (6%)

Query: 228 HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
           HD+ +    + +   K    V P  +  +R+E+++   + P AL N          +L V
Sbjct: 66  HDLHLLAIDADLRKTKGLDTVEPILHAPDRAELINWIRNRPMALSN--------GKVLTV 117

Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
           HA +LP++  ++  +  +E E  LR+K+       +   + AK  ++    +RL    N 
Sbjct: 118 HAGVLPQWDLQQTIECAQEVEKALRSKSYKTFLANMYGNSPAKWTNSLKGYERLRVITNT 177

Query: 348 IARMKF 353
           + RM+F
Sbjct: 178 LTRMRF 183


>gi|294635139|ref|ZP_06713648.1| DNA polymerase III, alpha subunit [Edwardsiella tarda ATCC 23685]
 gi|291091444|gb|EFE24005.1| DNA polymerase III, alpha subunit [Edwardsiella tarda ATCC 23685]
          Length = 264

 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 952  FENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
             + E+  LG Y +GHP+  Y K I R  G    ++   T RG       +V+  +   T+
Sbjct: 54   LDGERETLGLYLTGHPITQYLKEIERYAGGGRLKDMHPTERGKMTTAVGLVLGARVMTTK 113

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G+RIG  T  + +   E   F
Sbjct: 114  RGNRIGMCTLDDRSGRLEVMLF 135


>gi|253315123|ref|ZP_04838336.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp.
          aureus str. CF-Marseille]
          Length = 107

 Score = 42.7 bits (99), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G
Sbjct: 4  YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63


>gi|260588431|ref|ZP_05854344.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM
           20583]
 gi|260541305|gb|EEX21874.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM
           20583]
          Length = 428

 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 9/96 (9%)

Query: 813 NIQIMPPSVNTPCVDF--KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
           NI I  P +N     F     +NRI Y+L AI G+G    R ++E   ++P+  ++DF  
Sbjct: 5   NIPIALPYINQANFGFYPDEENNRIIYALKAINGIGDDVVRILLE---NRPYRDMQDFYE 61

Query: 871 RVDSKKL--NRRVLESLVFAGALDCFGYS-RMQLLQ 903
           R+   KL  N ++++ L+ AG  D    + R++L++
Sbjct: 62  RMIKTKLVKNSQMMQ-LIKAGVFDEISNTDRIELMK 96


>gi|282852083|ref|ZP_06261441.1| hypothetical protein HMPREF9209_1086 [Lactobacillus gasseri 224-1]
 gi|282556843|gb|EFB62447.1| hypothetical protein HMPREF9209_1086 [Lactobacillus gasseri 224-1]
          Length = 125

 Score = 42.0 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 10/113 (8%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V LQ  SS++LLE    + ++ +        A+A+TD N     + F + A   GI+P++
Sbjct: 4   VSLQNLSSFTLLESPTKVKDLAENAKKKGYSALALTDVNITCGLVNFYKAAKETGIKPLL 63

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           G QL I+      + +Q          ++++    +GY+ ++ L S + LL +
Sbjct: 64  GMQLRIN-----GLIDQANK-----YDLIVIAKDDQGYKNILRLSSAVNLLTE 106


>gi|255025012|ref|ZP_05296998.1| DNA polymerase III PolC [Listeria monocytogenes FSL J1-208]
          Length = 160

 Score = 42.0 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 27/42 (64%)

Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
           Y F K+HAAAY +++ + A+ K HYP+ F A   T+  D+ +
Sbjct: 26  YMFPKAHAAAYVLMAVRIAYFKVHYPLYFYATYFTVRADDFD 67


>gi|302533608|ref|ZP_07285950.1| DNA polymerase III alpha subunit [Streptomyces sp. C]
 gi|302442503|gb|EFL14319.1| DNA polymerase III alpha subunit [Streptomyces sp. C]
          Length = 148

 Score = 42.0 bits (97), Expect = 0.54,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 40/71 (56%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           + P F HL   S +S+  GA     + ++ A     A+A+TD ++L  A+ F++ A AAG
Sbjct: 30  RVPGFTHLHTVSGFSVRYGASHPERLAERAAERGMDALALTDRDSLAGAVRFAKAAAAAG 89

Query: 67  IQPIIGCQLDI 77
           I+P+ G  L +
Sbjct: 90  IRPLFGVDLAV 100


>gi|227495219|ref|ZP_03925535.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
 gi|226831671|gb|EEH64054.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
          Length = 117

 Score = 41.6 bits (96), Expect = 0.74,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SP +  L  HS YS L GA    +++D         IA+ D + ++ A++ +Q A    +
Sbjct: 2   SPEYAELHAHSCYSFLHGADQPPHLIDTALKLGLTGIALIDYDGVYGAVQTAQAAKNTPL 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
           + + G +L       L     G T  P      +L +   GY ++ +L+S
Sbjct: 62  KTVFGTEL------TLNDPTYGLTHLP------VLANNLNGYHQICKLIS 99


>gi|328462503|gb|EGF34510.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus MTCC
           5462]
          Length = 66

 Score = 41.6 bits (96), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 487 VSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
           + L+   + S+  +  +AD   +R+L + +  LEGL RH STHAAGIV+ + PL+  V +
Sbjct: 5   IDLKTAYEQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVAL 64


>gi|313618735|gb|EFR90649.1| DNA polymerase III, alpha subunit [Listeria innocua FSL S4-378]
          Length = 212

 Score = 41.2 bits (95), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKT 1009
            + E E+   G Y S HP+  Y+  L+ + I      +A++    I ++AA V   +  +T
Sbjct: 19   KLEKEKLYTGQYVSAHPVSYYQNKLQNLAI----TRLASVSSGKIYQVAAYVHEVKSIRT 74

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            +KG  + ++T S+ +KE  A  FP
Sbjct: 75   KKGETMCFLTISDESKELSAVMFP 98


>gi|313623606|gb|EFR93775.1| DNA polymerase III, alpha subunit [Listeria innocua FSL J1-023]
          Length = 212

 Score = 41.2 bits (95), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKT 1009
            + E E+   G Y S HP+  Y+  L+ + I      +A++    I ++AA V   +  +T
Sbjct: 19   KLEKEKLYTGQYVSAHPVSYYQNKLQNLAI----TRLASVSSGKIYQVAAYVHEVKSIRT 74

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            +KG  + ++T S+ +KE  A  FP
Sbjct: 75   KKGETMCFLTISDESKELSAVMFP 98


>gi|145640822|ref|ZP_01796404.1| DNA polymerase III subunit alpha [Haemophilus influenzae R3021]
 gi|145274336|gb|EDK14200.1| DNA polymerase III subunit alpha [Haemophilus influenzae 22.4-21]
          Length = 276

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 17/155 (10%)

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             +GA D  G  R  L ++L++  + +    K+      ++F     T  D        VE
Sbjct: 1    MSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHED--------VE 52

Query: 947  NSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
            N+             + E+  LG Y S HP+  Y   L        ++     RG    +
Sbjct: 53   NAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTV 112

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A +V + +   T+KG+R+G  T  + +   +   F
Sbjct: 113  AGLVAASRIAMTKKGNRLGIATLDDRSGRLDLTLF 147


>gi|331014281|gb|EGH94337.1| error-prone DNA polymerase [Pseudomonas syringae pv. lachrymans str.
            M302278PT]
          Length = 307

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 108/275 (39%), Gaps = 47/275 (17%)

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +A+++Y + W+K H P  F  A +           +  QDAR+ +I+I P  V     D 
Sbjct: 1    FALLTYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSHWDC 60

Query: 829  KVG---------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
             +          +  I   L  ++      A  I  A + +PF    D   R     L+ 
Sbjct: 61   TLEPLDHPDSTRNLAIRLGLRMLRSFREEDALRIEAARSKRPFADATDLAQRAG---LDS 117

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW----VEKNRTNKHENIFAHEKGTFS 935
            R  E+L  +GA           L+ L   +  A+W    VE  R    +++ + E     
Sbjct: 118  RAAEALADSGA-----------LRGLIGHRHRARWEVAGVEAQRP-LFDDVTSEEV---- 161

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--VATIRGN 993
             ++TL   +V    V    +   LG     HPL + +   R++  K +  S  + T+  N
Sbjct: 162  -QVTLPLPTVAEDLVA---DYATLGTTLGPHPLALLR---RQLAAKRFRSSQDLLTLENN 214

Query: 994  -NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
              + +A +V+ +Q+  T  G     VTF     E+
Sbjct: 215  RTLSVAGLVIGRQRPGTASG-----VTFVTLEDEF 244


>gi|270001355|gb|EEZ97802.1| hypothetical protein TcasGA2_TC000164 [Tribolium castaneum]
          Length = 966

 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 22/121 (18%)

Query: 258 SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE--------CDDIQKEEEN 309
           +E++ +F+++P  LE + E  R C  I+ VH  + P  + +         CD++  + +N
Sbjct: 684 NELLQLFNNMPTLLEYSTENLRLCLLIVLVHTLLAPDLVMRTHGVQVITVCDNLMADMKN 743

Query: 310 E------------LRNKAVAGLEV--RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
           E            +R+  + G E    +      K Y  +DY   +   L+++AR+  S 
Sbjct: 744 EGIVMLIRMLEIFIRSSPILGCETVFPILPRIFQKIYEGEDYPLLMSMYLSILARVLLSS 803

Query: 356 Y 356
           +
Sbjct: 804 H 804


>gi|50288233|ref|XP_446545.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525853|emb|CAG59472.1| unnamed protein product [Candida glabrata]
          Length = 315

 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 22/147 (14%)

Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE-RVAQIITFGSLQAKAALRD 460
           L F +F  P R++  D +I++  ++R    R++Q +Y  E R A+I+     + +  L+D
Sbjct: 162 LRFSKF--PSRLTENDLNIEYIYEKR----RFLQERYVQELRKAEILEQEIAKERKLLQD 215

Query: 461 VGRALQMPYSQVD--RLCKLIPNDPAHPVSLQAIAD--DSRFREARLADPSVDRLLEISQ 516
             + L     Q +  RL   +  +  HPV LQ+I+D  DS  ++       ++  LE S 
Sbjct: 216 -AKELTENIQQTNDKRLTDKLVRNEIHPVMLQSISDSLDSATQKIAYRRDVIELNLENSH 274

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLV 543
           ++     H +TH+       RP++QL+
Sbjct: 275 QI-----HQTTHSIR-----RPIAQLI 291


>gi|225159092|ref|ZP_03725399.1| DNA polymerase III, alpha subunit [Opitutaceae bacterium TAV2]
 gi|224802298|gb|EEG20563.1| DNA polymerase III, alpha subunit [Opitutaceae bacterium TAV2]
          Length = 229

 Score = 40.0 bits (92), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
             +N  ++FE E  +LGFY SGHPL+ Y  +L  +      E +        R+  +  + 
Sbjct: 3    TQNEKLQFEKE--LLGFYVSGHPLNDYDGLLEAIDSHFIHELLEQPDRTPFRIGGIAGTI 60

Query: 1005 QQKKTRKGSRIGWVTFSEPAKE 1026
             +K ++K +R  W  FS   KE
Sbjct: 61   AKKLSKKDNR-PWAAFSLATKE 81


>gi|270719404|ref|ZP_06223309.1| DNA polymerase III, alpha subunit [Haemophilus influenzae HK1212]
 gi|270315437|gb|EFA27694.1| DNA polymerase III, alpha subunit [Haemophilus influenzae HK1212]
          Length = 116

 Score = 39.3 bits (90), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 14/129 (10%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++  + +  ++   AA++  A+ +TD  N    + F  +  ++G++PIIG  + +    
Sbjct: 1   MIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLSSGMKPIIGADVKV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV-RICLSWLQEIG 140
             K    G   F     + LL    EGY+ +  L+S+ Y   +G   +  I   WL E  
Sbjct: 57  --KSALCGDEYF----DLTLLAKNNEGYKNITLLLSKAY--QRGYNDLPYIDQDWLIE-H 107

Query: 141 TEGLIMLTG 149
            EG+I+L+G
Sbjct: 108 REGVIILSG 116


>gi|218673758|ref|ZP_03523427.1| DNA polymerase III protein, alpha subunit [Rhizobium etli GR56]
          Length = 150

 Score = 39.3 bits (90), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +  LQV + +S L GA S + +          A+ + D N+L   +   + + A G++ +
Sbjct: 3  YAELQVTTHFSFLRGASSADELFATAKELGIEAVGVVDRNSLAGIVRALEASRATGVRLV 62

Query: 71 IGCQLDIDMQDNLKM 85
          +GC+L  D+QD + +
Sbjct: 63 VGCRL--DLQDGMSI 75


>gi|227529104|ref|ZP_03959153.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540]
 gi|227350948|gb|EEJ41239.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540]
          Length = 1442

 Score = 39.3 bits (90), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  HS  S ++   S+  + ++  +  QPAIAITD  ++ +  E  + A   GI+ + 
Sbjct: 339 IELHAHSEMSQMDATNSITELANRAHSWGQPAIAITDHADVQAFPEAFKAAKKTGIKMLY 398

Query: 72  GCQLDIDMQDNLKMT-NQGKTPFPTVPSIVLLVST---AEGYQRLIEL 115
           G + ++ + D + +  N+  TP      ++  V T   +  Y ++IEL
Sbjct: 399 GVEANV-VDDGIPLVYNENDTPLDGQTYVIFDVETTGLSAIYDKVIEL 445


>gi|149001609|ref|ZP_01826582.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
 gi|147760067|gb|EDK67056.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
          Length = 350

 Score = 38.9 bits (89), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 85/203 (41%), Gaps = 13/203 (6%)

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
           +D + IP DD     L +    LG+   E  G    + G+       +  +V    P   
Sbjct: 11  IDPNKIPMDDEGVMALFSGTDVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTF 69

Query: 656 DNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEAD 711
             ++  +   +G +  + +   LI   + +   VI  ++ +M     A L    + +  +
Sbjct: 70  AELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIME 129

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +R+ +  KI EE   ++  +I     N + +       E   K   Y F K+HAAAY +
Sbjct: 130 RVRKGLWLKISEE---ERNGYIEAMKANKVPEWY----IESCGKIK-YMFPKAHAAAYVM 181

Query: 772 ISYQTAWMKTHYPVEFLAASMTL 794
           ++ + A+ K H+P+ +  A  ++
Sbjct: 182 MALRVAYFKVHHPIYYYCAYFSI 204


>gi|330946296|gb|EGH47446.1| error-prone DNA polymerase [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 126

 Score = 38.5 bits (88), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 16/107 (14%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L   S++S   GA S   + ++       A+AITD   L   +   Q + + G+  I
Sbjct: 5   YAELHCLSNFSFQRGASSARELFERAVRHGYKALAITDECTLAGIVRAWQASKSTGLPLI 64

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
           +G ++ I+                  P +VLLV    GY+ L  L++
Sbjct: 65  VGSEMHIE----------------NGPKVVLLVENQAGYEALCTLIT 95


>gi|319645716|ref|ZP_07999947.1| DNA polymerase III [Bacillus sp. BT1B_CT2]
 gi|317392263|gb|EFV73059.1| DNA polymerase III [Bacillus sp. BT1B_CT2]
          Length = 468

 Score = 38.1 bits (87), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 115/279 (41%), Gaps = 55/279 (19%)

Query: 177 LFG-DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
           +FG D+ ++ LQ     ++ Y   ++VQ+A  + L  + T ++ +L  ED          
Sbjct: 197 VFGKDKFFIELQPALSEEQIYCNKKLVQIADGYGLKRIVTTDAHYLRPED--------RA 248

Query: 235 AHSTVVSQKDRPRVTPDHY----LKNRSEMVSIFSDL-----PEALENTVEIARRCSFIL 285
            H   ++ KD  R     Y    ++N  E+    + +      EA++NT+ I        
Sbjct: 249 IHQAFLNAKDGEREVDSFYEACFVQNVDEIHERMNYIDKEIVEEAIQNTLLIGEMIEDYT 308

Query: 286 QVHAPILPR--------------------FIEKECDDIQKEEENELRNKAVA-GLEVRLA 324
             H PI+P+                    +I K  +   K++++    K +  G E +L 
Sbjct: 309 IEHEPIIPKMELPNFKLRHLFKPAYDKYEYIRKMSE--SKDDQDRYLLKLIEDGFENKLL 366

Query: 325 QGAIAKG-YHAQDYRQRLDFELNVIARMK------FSGYFLIVADFIQ--WAKK--NNIP 373
           +  + +  +H      R++ EL  +  +        + Y++ V + I   W  +   +  
Sbjct: 367 KNDLTRDEFHK--ILSRINVELGELWEISQKLNQSMASYYVTVREIINIIWDDECGGDSL 424

Query: 374 VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           VG  RGS AG +  Y L  T I+P+++ L   R ++  R
Sbjct: 425 VGAARGSAAGFLINYLLDNTQINPMQYDLPHWRHIHKSR 463


>gi|169835547|ref|ZP_02868735.1| DNA polymerase III DnaE [candidate division TM7 single-cell isolate
           TM7a]
          Length = 85

 Score = 38.1 bits (87), Expect = 8.3,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 5/74 (6%)

Query: 43  AIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVL 101
           A AITD   L  A+EF ++A  AGI+PIIG +  +  +       Q  K  +     +VL
Sbjct: 5   ACAITDHGTLSGAIEFYKEAKKAGIKPIIGMEAYVAARGRADRDPQKDKARY----HLVL 60

Query: 102 LVSTAEGYQRLIEL 115
           L    +GYQ L+ L
Sbjct: 61  LAMNHKGYQNLMRL 74


Searching..................................................done


Results from round 2




>gi|315122785|ref|YP_004063274.1| DNA polymerase III subunit alpha [Candidatus Liberibacter
            solanacearum CLso-ZC1]
 gi|313496187|gb|ADR52786.1| DNA polymerase III subunit alpha [Candidatus Liberibacter
            solanacearum CLso-ZC1]
          Length = 1226

 Score = 1304 bits (3376), Expect = 0.0,   Method: Composition-based stats.
 Identities = 895/1034 (86%), Positives = 969/1034 (93%), Gaps = 1/1034 (0%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            L Q +E+SP FVHLQVHSSYSLLEGALSLNNILDK  ADQQPAIAITDTNNLF ALEFSQ
Sbjct: 15   LNQQVERSPGFVHLQVHSSYSLLEGALSLNNILDKAIADQQPAIAITDTNNLFGALEFSQ 74

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            KAC AGIQPIIGCQ++IDMQD L++T++GK+ FP +PSIVLLVS AEGYQRLIELVSRMY
Sbjct: 75   KACLAGIQPIIGCQIEIDMQDGLEVTHKGKSFFPELPSIVLLVSKAEGYQRLIELVSRMY 134

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            LL+QG +SVRI  SWLQEIGTEGLIMLTGGSSG IDRAF FN+ Q+AEKRLL+FK +FG+
Sbjct: 135  LLNQGHKSVRIYFSWLQEIGTEGLIMLTGGSSGSIDRAFLFNNPQIAEKRLLSFKNIFGN 194

Query: 181  RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            RLYVNLQRHRGYDRYRESQV+QLAY HELPLVATNN+LFLS+EDY+AHDVLMAVAHSTV+
Sbjct: 195  RLYVNLQRHRGYDRYRESQVIQLAYKHELPLVATNNALFLSQEDYDAHDVLMAVAHSTVI 254

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            SQ+DRPRVTPDHYLKNR+EM+S+F+DLPEAL+NTVEIARRCSFILQVH PILPRFI+KEC
Sbjct: 255  SQEDRPRVTPDHYLKNRAEMLSMFADLPEALDNTVEIARRCSFILQVHKPILPRFIDKEC 314

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            DD +K EENELR KA+ GLE RL+QG IAKGY AQDYR+RLDFEL+VIARMKFSGYFLIV
Sbjct: 315  DDFEKIEENELRTKAIEGLETRLSQGIIAKGYSAQDYRKRLDFELDVIARMKFSGYFLIV 374

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI
Sbjct: 375  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 434

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQDRRDEVI+YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP
Sbjct: 435  DFCQDRRDEVIQYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 494

Query: 481  NDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            N+PAHPVSL+ AIADDSRF+EA L DP VDRLLEIS KLEGLYRHASTHAAGIVIGDRPL
Sbjct: 495  NNPAHPVSLKQAIADDSRFQEAILDDPFVDRLLEISLKLEGLYRHASTHAAGIVIGDRPL 554

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            SQL+PMYRDVRSD+PVTQFNMKW+EKAGL+KFDFLGLKTLT+LQKSLD L QRG+KVDLS
Sbjct: 555  SQLIPMYRDVRSDIPVTQFNMKWVEKAGLVKFDFLGLKTLTVLQKSLDLLEQRGIKVDLS 614

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            LIPFDDHETYHLLT KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI+NI 
Sbjct: 615  LIPFDDHETYHLLTKKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIENIT 674

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +YNNRKNGKEKIVSIHPLID +LKETQGVI+YQEQVMQIAQLLSGYSLSEADVLRRAMGK
Sbjct: 675  IYNNRKNGKEKIVSIHPLIDSILKETQGVIVYQEQVMQIAQLLSGYSLSEADVLRRAMGK 734

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KIKEEMDKQKERF+SGASKNG+S  +AVNIFELLAKFADYGFNKSHAAAYAVISY+TAWM
Sbjct: 735  KIKEEMDKQKERFVSGASKNGLSNIMAVNIFELLAKFADYGFNKSHAAAYAVISYRTAWM 794

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI+ PSV T CVDF+VG+  IYYSL
Sbjct: 795  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIILPSVQTSCVDFEVGEKCIYYSL 854

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AAIKGVGT TA HIM   ADKPF+SLEDFCSRVDSK+LNRRVLESL+FAGALDCFGYSR 
Sbjct: 855  AAIKGVGTITAHHIMTVRADKPFESLEDFCSRVDSKQLNRRVLESLIFAGALDCFGYSRE 914

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            QL QSLDNIQKYAQW+EKNRTN   NIF  E+G+FS+KI+LE+FSVENSS RFE+E+RVL
Sbjct: 915  QLYQSLDNIQKYAQWIEKNRTNDQANIFVDEEGSFSEKISLEEFSVENSSARFEHERRVL 974

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GFYFSGHPLDVYK IL+KMGIK YEES+A+++ + IRLA MV+SK+QKKTRKGSRIGWVT
Sbjct: 975  GFYFSGHPLDVYKAILQKMGIKSYEESIASVKESIIRLAVMVMSKEQKKTRKGSRIGWVT 1034

Query: 1020 FSEPAKEYEANFFP 1033
            FSEP KEYE  FFP
Sbjct: 1035 FSEPDKEYEGIFFP 1048


>gi|15888619|ref|NP_354300.1| DNA polymerase III subunit alpha [Agrobacterium tumefaciens str. C58]
 gi|15156343|gb|AAK87085.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58]
          Length = 1167

 Score = 1215 bits (3144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 645/1033 (62%), Positives = 800/1033 (77%), Gaps = 7/1033 (0%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K+P FVHL+VHS+YSLLEGAL L  I+ K   D QPAIAITDTNNLF ALEFS+KA   G
Sbjct: 16   KTPGFVHLRVHSAYSLLEGALPLKKIMSKAVGDGQPAIAITDTNNLFVALEFSEKARDEG 75

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +QPIIGCQL IDMQD  +      +    +P+IVLL + AEGY+RL++LVSR YL  +G 
Sbjct: 76   LQPIIGCQLSIDMQDAAEDRRNHNSHLQKLPAIVLLAANAEGYERLVDLVSRAYLDGEGG 135

Query: 127  -QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
              SV I  +WL+E    GLI LTG S GP+D A     +  A++RLLT K LFGDRLY+ 
Sbjct: 136  SHSVHITRAWLEEASNAGLIALTGASGGPVDMALKEGHAAQAKERLLTLKSLFGDRLYIE 195

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            LQR  GYDR  E +++ LAY H++PLVATN + F S+ DYEAHD LMAVAH+ +VS   R
Sbjct: 196  LQRQSGYDRSHERRLIGLAYEHDIPLVATNEAFFPSKADYEAHDALMAVAHNAIVSDDSR 255

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R+TPDHYLK+R EM ++F+DLPEALENTVEIA RCS++L+   PILPRF     D    
Sbjct: 256  FRLTPDHYLKSRDEMTALFADLPEALENTVEIALRCSYVLKKRGPILPRFTGASDDPEAA 315

Query: 306  EEENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E      LR +AV GL+ RL+   +A GY  QDYR+RLDFEL VI+RMKF GYFLIVADF
Sbjct: 316  ERAETEELRRQAVEGLDQRLSALGMAPGYTEQDYRERLDFELGVISRMKFPGYFLIVADF 375

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK+ +IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFC
Sbjct: 376  IKWAKQQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFC 435

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+P
Sbjct: 436  QDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNP 495

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A+P  L +AI ++ R +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+L
Sbjct: 496  ANPTPLSKAIEEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKL 555

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VPMYRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L+ ++DF+A+RG+KVDL+ IP
Sbjct: 556  VPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVDFVAKRGIKVDLAAIP 615

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN
Sbjct: 616  LEDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYN 675

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G+E++ SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK
Sbjct: 676  ARKHGEEELESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIK 735

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EEMD+Q+ERF+ GA KNG+SK  A  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK H
Sbjct: 736  EEMDQQRERFVDGAIKNGVSKPQANTIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAH 795

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YPVEFLAASMTL+M N EK+  F QDA +  I+++ PSV T    F+ G+NRIYYSLAAI
Sbjct: 796  YPVEFLAASMTLDMANTEKLNDFRQDAGRLGIEVVAPSVQTSFRQFETGENRIYYSLAAI 855

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KGVG     HI++   +KPF SLEDFC R+D K++NRRVLESL+ AGA DCFG  R +L+
Sbjct: 856  KGVGEGAVEHIVQVRGEKPFTSLEDFCLRIDPKQINRRVLESLINAGAFDCFGRDRAELI 915

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              LD I  YAQ  + NRT    ++F    GT  +K+ L  F     S +   E +VLGFY
Sbjct: 916  GGLDRIIGYAQMAQNNRTIGQSDMFGSGGGTGPEKLILPAFQSWLPSEKLIREYQVLGFY 975

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIR--GNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
             + HPLD Y+P+L K+ ++ + +  A ++   + + RLA  V  KQ++KTR G+++G VT
Sbjct: 976  LTAHPLDTYRPLLEKLRVQNFADFSAAVKQGASTVGRLAGTVTGKQERKTRTGNKMGIVT 1035

Query: 1020 FSEPAKEYEANFF 1032
            FS+ + +YEA  F
Sbjct: 1036 FSDASGQYEAVLF 1048


>gi|86357261|ref|YP_469153.1| DNA polymerase III subunit alpha [Rhizobium etli CFN 42]
 gi|86281363|gb|ABC90426.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42]
          Length = 1165

 Score = 1209 bits (3129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 643/1031 (62%), Positives = 813/1031 (78%), Gaps = 6/1031 (0%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P F+HL+VHS+YSLLEGAL L  IL K   D QPAIAITDTNNLF ALEFSQKA   G+
Sbjct: 16   TPGFIHLRVHSAYSLLEGALPLKKILYKATGDNQPAIAITDTNNLFVALEFSQKAMDEGL 75

Query: 68   QPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            QPIIGCQ+ IDM+D L+   +G +     +PSIVLL +T  GY+RL++LVSR YL     
Sbjct: 76   QPIIGCQVSIDMEDGLESEKRGGQQALIKLPSIVLLAATEAGYERLVDLVSRAYLGGDSN 135

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q+V I  SWL+E GTEGLI LTG  +GP+D A        AE RLLT K+LFGDRLYV L
Sbjct: 136  QAVHIRASWLEEAGTEGLIALTGALTGPVDAAVREGHPAQAEARLLTLKRLFGDRLYVEL 195

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            QRH  YD+  E ++V+LAYTH+LPLVATN + F + +DY+AHD LMAVAH+ +VS   R 
Sbjct: 196  QRHGTYDKRHEQKIVRLAYTHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQ 304
            R+TPDHYLK+R+EM  +F+DLPEALENT+EIA+RCSF+L+   PILPRF     + ++ +
Sbjct: 256  RLTPDHYLKSRAEMARLFADLPEALENTIEIAKRCSFVLKTRKPILPRFTGATDDAEEAE 315

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + E  ELR +AV GL++RLA   ++ GY  +DYR+RL+FEL+VI RM+F GYFLIV+DFI
Sbjct: 316  RAEAGELRRQAVEGLDMRLATLGMSPGYEEKDYRERLEFELSVIERMRFPGYFLIVSDFI 375

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 376  KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA
Sbjct: 436  DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +P  L +AI ++ + +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV
Sbjct: 496  NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP 
Sbjct: 556  PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGINVDLAAIPL 615

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN 
Sbjct: 616  DDKPTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPVYNA 675

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+E++ SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK 
Sbjct: 676  RKHGEEEVESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMD+Q+ERF+ GA KNG+ K  A  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HY
Sbjct: 736  EMDQQRERFVEGAVKNGVKKPQADVIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTL+M N EK+  F QDA++  I+++ PSV T    F+ GDNRIYY+LAA+K
Sbjct: 796  PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHFETGDNRIYYALAALK 855

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG +   HI+E   DKPF S+EDFC R+D +++NRRVLESL++AGA DCFG  R QL  
Sbjct: 856  GVGESAVDHIVEVRGDKPFASIEDFCLRIDPRQVNRRVLESLIYAGAFDCFGTDRAQLAA 915

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             LD I  YAQ  ++N+ +   +IF     +  +KI+L  +S   +S R   E +VLGFY 
Sbjct: 916  GLDRILGYAQRAQENKLSGQSDIFGSALNSGPEKISLPPYSPWLASERLLKEFQVLGFYL 975

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            + HPLD Y  IL+KM ++ + E  A I+    N RLA  V+SKQ++KTR G+++G + FS
Sbjct: 976  TAHPLDSYNNILQKMRVQTFAEFSAAIKQGAANARLAGTVISKQERKTRTGNKMGIIVFS 1035

Query: 1022 EPAKEYEANFF 1032
            + + ++EA  F
Sbjct: 1036 DSSGQFEAVLF 1046


>gi|327194832|gb|EGE61666.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CNPAF512]
          Length = 1165

 Score = 1205 bits (3118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 644/1036 (62%), Positives = 814/1036 (78%), Gaps = 6/1036 (0%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + +  +P F+HL+VHS+YSLLEGAL L  IL K A D QPAIAITDTNNLF ALEFSQKA
Sbjct: 11   EAIGGTPGFIHLRVHSAYSLLEGALPLKKILYKAAGDNQPAIAITDTNNLFVALEFSQKA 70

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
               G+QPIIGCQ+ IDM+D L+   +G +     +PSIVLL +T  GY+RL++LVSR YL
Sbjct: 71   MDDGLQPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATEAGYERLVDLVSRAYL 130

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                 Q++ I  SWL+E GTEGLI LTG  +GP+D A        AE RLLT K+LFGDR
Sbjct: 131  GGDSNQAIHIRASWLEEAGTEGLIALTGALTGPVDAAIREGHPAQAEARLLTLKRLFGDR 190

Query: 182  LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            LYV LQRH  YD+  E ++V LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS
Sbjct: 191  LYVELQRHGTYDKRHEQKIVGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVS 250

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKE 299
               R R+TPDHYLK+R+EM  +F+DLPEALENT+EIARRCSF+L+   PILPRF     +
Sbjct: 251  DDSRFRLTPDHYLKSRAEMAKLFADLPEALENTIEIARRCSFVLKTRKPILPRFTGATDD 310

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             ++ ++ E  ELR +AV GL++RL+   ++ GY  +DYR+RL+FEL+VI RM+F GYFLI
Sbjct: 311  AEEAERAEAGELRRQAVEGLDMRLSTLGMSPGYEEKDYRERLEFELSVIERMRFPGYFLI 370

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI+WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFD
Sbjct: 371  VADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFD 430

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQDRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+
Sbjct: 431  IDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLV 490

Query: 480  PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            PN+PA+P  L +AI ++ + +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRP
Sbjct: 491  PNNPANPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRP 550

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            LS+LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL
Sbjct: 551  LSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGISVDL 610

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI
Sbjct: 611  AAIPLDDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENI 670

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              YN RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMG
Sbjct: 671  PTYNARKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMG 730

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KKIK EMD+Q+ERF+ GA KNG+SK  A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+
Sbjct: 731  KKIKAEMDQQRERFVDGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAY 790

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            MK HYPVEFLAASMTL+M N EK+  F QDA++  I+++ PSV T    F+ GDNRIYY+
Sbjct: 791  MKAHYPVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRQFETGDNRIYYA 850

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            LAA+KGVG +   HI+E   D PF  +EDFC R+D +++NRRVLESL++AGA DCFG  R
Sbjct: 851  LAALKGVGESAVDHIVEVRGDTPFAGIEDFCLRIDPRQVNRRVLESLIYAGAFDCFGTDR 910

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             QL   LD I  YAQ  ++N+ +   +IF     +  +KI L  FS   +S R   E +V
Sbjct: 911  AQLSAGLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKIALPPFSPWLASERLLKEFQV 970

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIG 1016
            LGFY + HPLD Y  IL+KM ++ + E  A I+   +N RLA  V+SKQ++KTR G+++G
Sbjct: 971  LGFYLTAHPLDSYSNILQKMRVQTFAEFSAAIKQGASNARLAGTVISKQERKTRTGNKMG 1030

Query: 1017 WVTFSEPAKEYEANFF 1032
             + FS+ + ++EA  F
Sbjct: 1031 IIVFSDSSGQFEAVLF 1046


>gi|325292654|ref|YP_004278518.1| DNA polymerase III subunit alpha [Agrobacterium sp. H13-3]
 gi|325060507|gb|ADY64198.1| DNA polymerase III alpha subunit [Agrobacterium sp. H13-3]
          Length = 1166

 Score = 1205 bits (3117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 632/1032 (61%), Positives = 791/1032 (76%), Gaps = 6/1032 (0%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K+P FVHL+VHS+YSLLEGAL L  I+ K  AD QPAIAITDTNNLF ALEFS+KA   G
Sbjct: 16   KTPGFVHLRVHSAYSLLEGALPLKKIMSKAVADGQPAIAITDTNNLFVALEFSEKARDEG 75

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ-G 125
            +QPIIGCQ+ IDMQD +       +    +P+IVLL + A GY+RL++L+SR YL  + G
Sbjct: 76   LQPIIGCQVSIDMQDAVDDRRNHNSHLAKLPAIVLLAADAGGYERLVDLISRAYLEGESG 135

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             QSV I  +WL+E    GLI+LTG S GP+D A     +  A +RLL  K LFGD+LY+ 
Sbjct: 136  GQSVHITRAWLEEASNAGLIVLTGASGGPVDMALKDGHTAQARERLLALKSLFGDKLYIE 195

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            LQR  G+DR  E +++ LAY H++PLVATN + F S  DYEAHD LMAVAH+ +VS   R
Sbjct: 196  LQRQSGFDRVHERRMIGLAYEHDIPLVATNEAFFPSRADYEAHDALMAVAHNAIVSDDSR 255

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R+TPDHY+K+R EM  +F+DLPEALENTVEIA RCS++L+   PILPRF     D    
Sbjct: 256  FRLTPDHYMKSREEMAELFADLPEALENTVEIAMRCSYVLKKRGPILPRFTGASDDPEAA 315

Query: 306  EEENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +      LR +AV GL++RLA   +A GY  Q+YR RLDFEL VI RM F GYFLIVADF
Sbjct: 316  QRAEAEELRRQAVEGLDLRLAALGMAPGYAEQEYRDRLDFELGVIERMGFPGYFLIVADF 375

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK+ +IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFC
Sbjct: 376  IKWAKQQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFC 435

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+P
Sbjct: 436  QDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNP 495

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A+P  L +AI ++ R +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+L
Sbjct: 496  ANPTPLSKAIEEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKL 555

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VPMYRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L+ ++DF+A+RG+KVDL+ IP
Sbjct: 556  VPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVDFVAKRGIKVDLAAIP 615

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN
Sbjct: 616  LDDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYN 675

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G+E++ SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK
Sbjct: 676  ARKHGEEELESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIK 735

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EEMD+Q+ERF+ GA +N +SK  A  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK H
Sbjct: 736  EEMDQQRERFVDGAIRNSVSKPQANTIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAH 795

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YPVEFLAASMTL+M N EK+  F QDA +  I+++ PSV T    F+ G+NRIYYSLAAI
Sbjct: 796  YPVEFLAASMTLDMANTEKLNDFRQDASRLGIEVVAPSVQTSFRQFETGENRIYYSLAAI 855

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KGVG     HI+     KPF SLEDFC R+D K++NRRVLESL+ AG  DCFG  R +++
Sbjct: 856  KGVGEGAVEHIVTVRDGKPFASLEDFCLRIDPKQINRRVLESLINAGGFDCFGRDRAEMI 915

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              LD I  Y+Q  +++R     ++F     +  +K+ L  F    +S +   E +VLGFY
Sbjct: 916  GGLDRIIGYSQRAQESRVTGQSDMFGSGGASGPEKLILPAFQPWLASEKLLREYQVLGFY 975

Query: 963  FSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTF 1020
             + HPLD Y+P+L K+ ++ + + S A  +G    RLA  V  KQ++KTR G+++G VTF
Sbjct: 976  LTAHPLDTYRPVLEKLRVQNFADFSAAVKQGATAGRLAGTVTGKQERKTRTGNKMGIVTF 1035

Query: 1021 SEPAKEYEANFF 1032
            S+ + +YEA  F
Sbjct: 1036 SDASGQYEAVLF 1047


>gi|150396144|ref|YP_001326611.1| DNA polymerase III subunit alpha [Sinorhizobium medicae WSM419]
 gi|150027659|gb|ABR59776.1| DNA polymerase III, alpha subunit [Sinorhizobium medicae WSM419]
          Length = 1165

 Score = 1204 bits (3116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 644/1030 (62%), Positives = 796/1030 (77%), Gaps = 6/1030 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS+YSLLEGAL L  I+ K  AD QPAI I DTNNLF+ALEFSQKA   G+Q
Sbjct: 17   PQFVHLRVHSAYSLLEGALPLKKIIGKAIADDQPAIGIADTNNLFAALEFSQKAAGDGLQ 76

Query: 69   PIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQL IDM+D  +   +G    F  +PS+VL+ +T +GY RL+ELVSR YL  +G  
Sbjct: 77   PIIGCQLSIDMEDEAEGERRGHAHQFVKLPSLVLIAATDDGYARLVELVSRAYLEGEGHH 136

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             VRI  SWL   GT GLI LTG  +GPID A    S  +AE RL T  +LFGDRLYV LQ
Sbjct: 137  QVRISRSWLSAGGTSGLIALTGAGTGPIDMAVKAGSPALAEARLKTLIELFGDRLYVELQ 196

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  YDR  E++++ LAY  ++PLVATN + F S  DY+AHD L+AVAH+ +VS   R R
Sbjct: 197  RHGNYDRSHENRMIDLAYRLDVPLVATNEAFFPSPADYDAHDALIAVAHNAMVSDDSRFR 256

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE- 306
            +TPDHYLK+R EM ++F+DLPEALENT+EIARRCSF+L+  +PILPRF     D  Q E 
Sbjct: 257  LTPDHYLKSRKEMAALFADLPEALENTIEIARRCSFMLKTRSPILPRFTGASGDPEQAER 316

Query: 307  -EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E  ELR +A  GLE RLA+  +A GY  +DYR+RL FEL VI RMKF GYFLIVADFI+
Sbjct: 317  AEVAELRRQAEEGLEGRLAKLGMAPGYKEEDYRERLAFELGVIERMKFPGYFLIVADFIK 376

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+++IPVGPGRGSGAGS+ AYALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQD
Sbjct: 377  WAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFDIDFCQD 436

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA+
Sbjct: 437  RREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPAN 496

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            P  L +AI ++ R +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLSQLVP
Sbjct: 497  PTPLSKAIEEEPRLQEEAEKEPVVGRLLDIAQKIEGLYRHASTHAAGIVIGDRPLSQLVP 556

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ +DL+ IP D
Sbjct: 557  MYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVAKRGIHIDLASIPLD 616

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY  L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI +YN R
Sbjct: 617  DPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPIYNAR 676

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+E+I SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIKEE
Sbjct: 677  KHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKEE 736

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MDKQ+ RF+ GA +NG+SK  A  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HYP
Sbjct: 737  MDKQRARFVDGAVRNGVSKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYP 796

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMTL+M N EKI  F QDA +  IQ++ PSV T    F+ G+ RIYYSLAA+KG
Sbjct: 797  VEFLAASMTLDMSNTEKINDFRQDAMRLGIQVIAPSVQTSHRHFETGEKRIYYSLAALKG 856

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG +   HI+    D+PF SLEDFC R+D K LNRRV ESL+ AGA DCFGY R +L+  
Sbjct: 857  VGESAVDHIVAVREDRPFASLEDFCLRIDPKLLNRRVFESLIAAGAFDCFGYDRAELVGG 916

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            LD I  +AQ  ++N+ +   ++F     T  +KI L  ++   +S +   E +VLGFY S
Sbjct: 917  LDRILGFAQRAQENKVSGQSDMFGAGAATGPEKIALPPYTPWLASEKLHREFQVLGFYLS 976

Query: 965  GHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPLD Y  +L KM ++ + + S A  +G    RLA  V SKQ++KTR G+++G V FS+
Sbjct: 977  AHPLDTYNSLLAKMRVQTFADFSAAVKKGATAGRLAGTVTSKQERKTRTGNKMGIVAFSD 1036

Query: 1023 PAKEYEANFF 1032
             + ++EA  F
Sbjct: 1037 ASGQFEAVLF 1046


>gi|222148298|ref|YP_002549255.1| DNA polymerase III subunit alpha [Agrobacterium vitis S4]
 gi|221735286|gb|ACM36249.1| DNA polymerase III alpha chain [Agrobacterium vitis S4]
          Length = 1179

 Score = 1202 bits (3111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 644/1033 (62%), Positives = 794/1033 (76%), Gaps = 6/1033 (0%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS+YSLLEGAL L  IL K+A+DQQPAIAITDTNNLF ALEFSQKA +
Sbjct: 29   VNAGPGFVHLRVHSAYSLLEGALPLKKILSKVASDQQPAIAITDTNNLFIALEFSQKALS 88

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPIIGCQL IDM+D      +G +     P+IVLL +   GY+RL++LVSR YL   
Sbjct: 89   DGLQPIIGCQLSIDMED-ANEEKRGNSSLAKYPAIVLLAADPAGYERLVDLVSRAYLQGD 147

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              QSV I  SWL+EIGT+GLI LTG + GP+D          A  RL T K LFGDRLY+
Sbjct: 148  NTQSVHITASWLEEIGTDGLIALTGATGGPVDLPVKDGHHAQALSRLQTLKSLFGDRLYI 207

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQRH+GYDR  ES+++ LAY H++PLVATN + F S +DY+AHD LMAVAH+ +VS   
Sbjct: 208  ELQRHQGYDRVHESRMIALAYDHDIPLVATNEAFFPSRDDYDAHDALMAVAHNAIVSDDR 267

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TPDHYLK+R EM ++F DLPEALENTVEIA RCSF+L    PILPRF     D  +
Sbjct: 268  RFRLTPDHYLKSRKEMQTLFRDLPEALENTVEIASRCSFVLDTRNPILPRFTGGSDDPEE 327

Query: 305  KEEENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             E      LR +A+ GL+ RLA+  +A GY  ++YR RLDFEL VI RMKF GYFLIVAD
Sbjct: 328  AERAEAGELRRQAIEGLDDRLAKLGMAPGYDEKEYRDRLDFELGVIERMKFPGYFLIVAD 387

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK  +IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDF
Sbjct: 388  FIKWAKSQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDF 447

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVDR+CKL+PN+
Sbjct: 448  CQDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDRICKLVPNN 507

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+P  L +AI ++ +F+E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+
Sbjct: 508  PANPTPLSKAIEEEPKFQEEAEKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSK 567

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF   R +++DL+ I
Sbjct: 568  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFCRLRDIEIDLATI 627

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VY
Sbjct: 628  PLDDEKTYQMLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVY 687

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RK+G+E+I SIHP ID +LKETQGVI+YQEQVMQ+AQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 688  NARKHGEEEIESIHPTIDYLLKETQGVIVYQEQVMQVAQVLSGYSLGEADLLRRAMGKKI 747

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            KEEMDKQ+ RF+ GA KNG+SK  A NIF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK 
Sbjct: 748  KEEMDKQRARFVDGAVKNGVSKPQADNIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKA 807

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMTL+M N EK+  F QDA +  I+++PPSV T    F+ G NRIYYSLAA
Sbjct: 808  HYPVEFLAASMTLDMANTEKLVDFRQDAGRLGIEVVPPSVQTSFRHFQTGPNRIYYSLAA 867

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +KGVG     HI+    D PF  LEDFC R+D K++NRRV ESL+FAGA DCFG  R +L
Sbjct: 868  LKGVGDAAVEHIVTVRGDTPFADLEDFCLRIDPKQINRRVFESLIFAGAFDCFGRDRPEL 927

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L  +D I  YAQ  ++N  +   ++F     T  ++I+   ++    S +   E +VLGF
Sbjct: 928  LAGMDRIIGYAQRAQENAVSGQSDMFGSGGATGPERISFPTYTPWLPSEKLMREFQVLGF 987

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESV-ATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD YKP+L KM ++ + +   A  +G    RLA  V+SKQ++KTR G+++G VT
Sbjct: 988  YLSAHPLDTYKPLLEKMRVQNFVDFSGAVRQGATAGRLAGTVISKQERKTRTGNKMGIVT 1047

Query: 1020 FSEPAKEYEANFF 1032
            FS+   ++EA  F
Sbjct: 1048 FSDATGQFEAVLF 1060


>gi|190891309|ref|YP_001977851.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
 gi|190696588|gb|ACE90673.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
          Length = 1165

 Score = 1202 bits (3110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 643/1036 (62%), Positives = 813/1036 (78%), Gaps = 6/1036 (0%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + +  +P F+HL+VHS+YSLLEGAL L  IL K A D QPAIAITDTNNLF ALEFSQKA
Sbjct: 11   EAIGGTPGFIHLRVHSAYSLLEGALPLKKILYKAAGDNQPAIAITDTNNLFVALEFSQKA 70

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
               G+QPIIGCQ+ IDM+D L+   +G +     +PSIVLL +T  GY+RL++LVSR YL
Sbjct: 71   MDDGLQPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATEAGYERLVDLVSRAYL 130

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                 Q++ I  SWL+E GTEGLI LTG  +GP+D A     +  AE RLL  K+LFGDR
Sbjct: 131  GGDSNQAIHIRASWLEEAGTEGLIALTGALTGPVDAAIREGHTAQAEARLLMLKRLFGDR 190

Query: 182  LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            LYV LQRH  YD+  E ++V LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS
Sbjct: 191  LYVELQRHGTYDKPHEQKIVGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVS 250

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKE 299
               R R+TPDHYLK+R+EM  +F+DLPEALENT+EIARRCSF+L+   PILPRF     +
Sbjct: 251  DDSRFRLTPDHYLKSRAEMAKLFADLPEALENTIEIARRCSFVLKTRKPILPRFTGATDD 310

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             ++ ++ E  ELR +AV GL+ RL+   ++ GY  +DYR+RL+FEL+VI RM+F GYFLI
Sbjct: 311  AEEAERAEAGELRRQAVEGLDRRLSTLGMSPGYEEKDYRERLEFELSVIERMRFPGYFLI 370

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI+WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFD
Sbjct: 371  VADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFD 430

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQDRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+
Sbjct: 431  IDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLV 490

Query: 480  PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            PN+PA+P  L +AI ++ + +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRP
Sbjct: 491  PNNPANPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRP 550

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            LS+LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL
Sbjct: 551  LSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGISVDL 610

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI
Sbjct: 611  AAIPLDDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENI 670

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              YN RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMG
Sbjct: 671  PTYNARKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMG 730

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KKIK EMD+Q+ERF+ GA KNG+SK  A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+
Sbjct: 731  KKIKAEMDQQRERFVDGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAY 790

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            MK HYPVEFLAASMTL+M N EK+  F QDA++  I+++ PSV T    F+ GDNRIYY+
Sbjct: 791  MKAHYPVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRQFETGDNRIYYA 850

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            LAA+KGVG +   HI+E   D PF  +EDFC R+D +++NRRVLESL++AGA DCFG  R
Sbjct: 851  LAALKGVGESAVDHIVEVRGDTPFAGIEDFCLRIDPRQVNRRVLESLIYAGAFDCFGTDR 910

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             QL   LD I  YAQ  ++N+ +   +IF     +  +KI L  FS   +S R   E +V
Sbjct: 911  AQLSAGLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKIALPPFSPWLASERLLKEFQV 970

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIG 1016
            LGFY + HPLD Y  IL+KM ++ + E  A I+   +N RLA  V+SKQ++KTR G+++G
Sbjct: 971  LGFYLTAHPLDSYNNILQKMRVQTFAEFSAAIKQGASNARLAGTVISKQERKTRTGNKMG 1030

Query: 1017 WVTFSEPAKEYEANFF 1032
             + FS+ + ++EA  F
Sbjct: 1031 IIVFSDSSGQFEAVLF 1046


>gi|116251489|ref|YP_767327.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv. viciae
            3841]
 gi|115256137|emb|CAK07218.1| putative DNA polymerase III alpha subunit [Rhizobium leguminosarum
            bv. viciae 3841]
          Length = 1165

 Score = 1200 bits (3104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 642/1031 (62%), Positives = 813/1031 (78%), Gaps = 6/1031 (0%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P F+HL+VHS+YSLLEGAL L  IL K   D QPAIAITDTNNLF ALEFSQKA   G+
Sbjct: 16   TPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNLFVALEFSQKAMEDGL 75

Query: 68   QPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            QPIIGCQ+ IDM+D L+   +G +     +PSIVLL +T  GY+RL++LVSR YL  +  
Sbjct: 76   QPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATDAGYERLVDLVSRAYLGGESN 135

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q+V I  SWL+E GTEGLI L+G  +GP+D A        AE RLLT K+LFGDRLYV L
Sbjct: 136  QAVHISASWLEEAGTEGLIALSGALTGPVDVAIKEGHPTQAEARLLTLKRLFGDRLYVEL 195

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            QRH  YD+  E +++ LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS   R 
Sbjct: 196  QRHGTYDKRHEQKIIGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQ 304
            R+TPDHYLK+R+EMV +F+DLPEALENT+EIA RCSF+L+   PILPRF     + ++ +
Sbjct: 256  RLTPDHYLKSRAEMVKLFADLPEALENTIEIATRCSFVLKTRKPILPRFTGATDDAEEAE 315

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + E +ELR +AV GL++RL+   ++ GY  +DYR+RLDFEL+VI RM+F GYFLIVADFI
Sbjct: 316  RAEASELRRQAVEGLDMRLSTLGMSPGYEEKDYRERLDFELSVIERMRFPGYFLIVADFI 375

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 376  KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA
Sbjct: 436  DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +P  L +AI ++ + +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV
Sbjct: 496  NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+ G+K+DL+ IP 
Sbjct: 556  PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKLGIKIDLAAIPL 615

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN 
Sbjct: 616  DDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNA 675

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK 
Sbjct: 676  RKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMD+Q+ERF+ GA KNG+SK  A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+MK HY
Sbjct: 736  EMDQQRERFVVGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTL+M N EK+  F QDA++  I+++ PSV T    F+ GDNRIYY+LAA+K
Sbjct: 796  PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHFETGDNRIYYALAALK 855

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG +   HI+E   DKPF S+EDFC R+D +++NRRVLESL++AGA DCF   R QL  
Sbjct: 856  GVGESAVDHIVEVRGDKPFASIEDFCLRIDPRQVNRRVLESLIYAGAFDCFDMDRAQLAA 915

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             LD +  YAQ  ++N+ +   +IF     +  +KI+L  FS    S R   E +VLGFY 
Sbjct: 916  GLDRVLGYAQRAQENKLSGQSDIFGSTLTSGPEKISLPPFSPWLPSERLLKEFQVLGFYL 975

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            + HPLD Y  IL+KM ++ + E  A I+    N RLA  V+SKQ++KTR G+++G + FS
Sbjct: 976  TAHPLDSYNNILQKMRVQTFAEFSAAIKQGAANARLAGTVISKQERKTRTGNKMGIIVFS 1035

Query: 1022 EPAKEYEANFF 1032
            + + ++EA  F
Sbjct: 1036 DSSGQFEAVLF 1046


>gi|241204110|ref|YP_002975206.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv.
            trifolii WSM1325]
 gi|240858000|gb|ACS55667.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM1325]
          Length = 1165

 Score = 1197 bits (3096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 642/1036 (61%), Positives = 814/1036 (78%), Gaps = 6/1036 (0%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + +  +P F+HL+VHS+YSLLEGAL L  IL K   D QPAIAITDTNNLF ALEFSQKA
Sbjct: 11   EAIGGTPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNLFVALEFSQKA 70

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
               G+QPIIGCQ+ IDM D L+   +G +     +P+IVLL +T  GY+RL++LVSR YL
Sbjct: 71   MEEGLQPIIGCQVSIDMGDGLETEKRGGQQALVKLPAIVLLAATDAGYERLVDLVSRAYL 130

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
              +  Q+V I  SWL+E GTEGLI LTG  +GP+D A        AE RLLT K+LFGDR
Sbjct: 131  GGESNQAVHISASWLEEAGTEGLIALTGALTGPVDVAIKEGHPAQAEARLLTLKRLFGDR 190

Query: 182  LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            LYV LQRH  YD+  E +++ LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS
Sbjct: 191  LYVELQRHGTYDKRHEQKIIGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVS 250

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKE 299
               R R+TPDHYLK+R+EMV +F+DLPEALENT+EIA RCSF+L+   PILPRF     +
Sbjct: 251  DDSRFRLTPDHYLKSRAEMVKLFADLPEALENTIEIATRCSFVLKTRKPILPRFTGATDD 310

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             ++ ++ E +ELR +AV GL++RLA   ++ GY  +DYR+RLDFEL+VI RM+F GYFLI
Sbjct: 311  AEEAERAEASELRRQAVEGLDMRLATLGMSAGYEEKDYRERLDFELSVIERMRFPGYFLI 370

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI+WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFD
Sbjct: 371  VADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFD 430

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQDRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+
Sbjct: 431  IDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLV 490

Query: 480  PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            PN+PA+P  L +AI ++ + +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRP
Sbjct: 491  PNNPANPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRP 550

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            LS+LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+ GVKVDL
Sbjct: 551  LSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKLGVKVDL 610

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI
Sbjct: 611  AAIPLDDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENI 670

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              YN RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMG
Sbjct: 671  PTYNARKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMG 730

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KKIK EMD+Q+ERF+ GA +NG+SK  A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+
Sbjct: 731  KKIKAEMDQQRERFVVGAVRNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAY 790

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            MK HYPVEFLAASMTL+M N EK+  F QDA++  I+++ PSV +    F+ GDNRIYY+
Sbjct: 791  MKAHYPVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQSSFRHFETGDNRIYYA 850

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            LAA+KGVG +   HI+E   DKPF S+EDFC R+D +++NRRVLESL++AGA DCF   R
Sbjct: 851  LAALKGVGESAVDHIVEVRGDKPFASIEDFCLRIDPRQVNRRVLESLIYAGAFDCFDMDR 910

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             +L   LD +  YAQ  ++N+ +   +IF     +  +KI+L  FS    S R   E +V
Sbjct: 911  AELAAGLDRVLGYAQRAQENKLSGQSDIFGSTLTSGPEKISLPPFSPWLPSERLLKEFQV 970

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIG 1016
            LGFY + HPLD Y  IL+KM ++ + E  A I+    N RLA  V+SKQ++KTR G+++G
Sbjct: 971  LGFYLTAHPLDSYNNILQKMRVQTFAEFSAAIKQGAANARLAGTVISKQERKTRTGNKMG 1030

Query: 1017 WVTFSEPAKEYEANFF 1032
             + FS+ + ++EA  F
Sbjct: 1031 IIVFSDSSGQFEAVLF 1046


>gi|15965042|ref|NP_385395.1| DNA polymerase III subunit alpha [Sinorhizobium meliloti 1021]
 gi|307301114|ref|ZP_07580883.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
 gi|15074221|emb|CAC45868.1| Probable DNA polymerase III, alpha chain [Sinorhizobium meliloti
            1021]
 gi|306904069|gb|EFN34655.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
          Length = 1169

 Score = 1195 bits (3091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 638/1030 (61%), Positives = 787/1030 (76%), Gaps = 6/1030 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS+YSLLEGAL L  I+ K  AD QPAI I DTNNLF+ALEFSQKA   G+Q
Sbjct: 21   PQFVHLRVHSAYSLLEGALPLKKIIGKAVADDQPAIGIADTNNLFAALEFSQKAADDGLQ 80

Query: 69   PIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQL IDM+D  +   +G    F  +P+IVL+ +T +GY RL+ELVSR YL  +G Q
Sbjct: 81   PIIGCQLSIDMEDEAEGERRGHAHQFVKLPAIVLIAATEDGYARLVELVSRAYLEGEGHQ 140

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              RI  SWL   GT GLI LTG  +GP+D A    S  +AE RL    +LFGDRLYV LQ
Sbjct: 141  QTRISRSWLAAGGTTGLIALTGAGAGPVDMALKSGSPALAEARLKALIELFGDRLYVELQ 200

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  YDR  E++++ LAY  ++PLVATN + F S  DY+AHD LMAVAH+ +VS   R R
Sbjct: 201  RHGNYDRRHENRMIDLAYRLDIPLVATNEAFFPSPSDYDAHDALMAVAHNAMVSDDSRFR 260

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +TPDHYLK+R EM ++F+DLPEALENT+E+ARRCSF+L+   PILPRF     D  + E 
Sbjct: 261  LTPDHYLKSRKEMAALFADLPEALENTIEVARRCSFMLKTRGPILPRFTGASDDPEEAER 320

Query: 308  ENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 LR +A  GLE RLA+  +A GY  +DYR+RL FEL VI RMKF GYFLIVADFI+
Sbjct: 321  AEVAELRRQAEEGLEERLAKLGMAPGYKEEDYRERLAFELGVIQRMKFPGYFLIVADFIK 380

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+++IPVGPGRGSGAGS+ AYALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQD
Sbjct: 381  WAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFDIDFCQD 440

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA+
Sbjct: 441  RREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPAN 500

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            P  L +AI ++ R RE    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLSQLVP
Sbjct: 501  PTPLSKAIEEEPRLREEAEKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSQLVP 560

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+ +RG+ +DL+ IP D
Sbjct: 561  MYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAIDFVGKRGIHIDLASIPLD 620

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY  L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN R
Sbjct: 621  DPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYNAR 680

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+E+I SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK E
Sbjct: 681  KHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKAE 740

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MDKQ+ RF+ GA KNG+SK  A  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HYP
Sbjct: 741  MDKQRARFVDGAVKNGVSKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYP 800

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMTL+M N +KI  F QDA +  IQ++ PSV T    F+ GDNRIYYSLAA+KG
Sbjct: 801  VEFLAASMTLDMSNTDKINDFRQDAMRLGIQVVAPSVQTSHRHFETGDNRIYYSLAALKG 860

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG +   HI+    D+PF SLEDFC R+D K LNRRV ESL+ AGA DCFGY R +L+  
Sbjct: 861  VGESAVDHIVAVRGDRPFASLEDFCLRIDPKLLNRRVFESLIAAGAFDCFGYDRAELIGG 920

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            LD I  +AQ  ++N+ +   ++F     T  +KI L  ++   +S +   E +VLGFY S
Sbjct: 921  LDRILGFAQRAQENKVSGQSDMFGAGAATGPEKIALPPYTPWLASEKLHREFQVLGFYLS 980

Query: 965  GHPLDVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPLD Y  +L KM ++ + +            RLA  V SKQ++KTR G+++G V FS+
Sbjct: 981  AHPLDTYNNLLAKMRVQTFADFSAAVKKGAAAGRLAGTVTSKQERKTRTGNKMGIVAFSD 1040

Query: 1023 PAKEYEANFF 1032
             + ++EA  F
Sbjct: 1041 ASGQFEAVLF 1050


>gi|307317847|ref|ZP_07597285.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
 gi|306896609|gb|EFN27357.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
          Length = 1169

 Score = 1193 bits (3086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 637/1030 (61%), Positives = 787/1030 (76%), Gaps = 6/1030 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS+YSLLEGAL L  I+ K  AD QPAI I DTNNLF+ALEFSQKA   G+Q
Sbjct: 21   PQFVHLRVHSAYSLLEGALPLKKIIGKAVADDQPAIGIADTNNLFAALEFSQKAADDGLQ 80

Query: 69   PIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQL IDM+D  +   +G    F  +P+IVL+ +T +GY RL+ELVSR YL  +G Q
Sbjct: 81   PIIGCQLSIDMEDEAEGERRGHAHQFVKLPAIVLIAATEDGYARLVELVSRAYLEGEGHQ 140

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              RI  SWL   GT GLI LTG  +GP+D A    S  +AE RL    +LFGDRLYV LQ
Sbjct: 141  QTRISRSWLAAGGTTGLIALTGAGAGPVDMALKSGSPALAEARLQALIELFGDRLYVELQ 200

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  YDR  E++++ LAY  ++PLVATN + F S  DY+AHD LMAVAH+ +VS   R R
Sbjct: 201  RHGNYDRRHENRMIDLAYRLDIPLVATNEAFFPSPSDYDAHDALMAVAHNAMVSDDSRFR 260

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +TPDHYLK+R EM ++F+DLPEALENT+E+ARRCSF+L+   PILPRF     D  + E 
Sbjct: 261  LTPDHYLKSRKEMAALFADLPEALENTIEVARRCSFMLKTRGPILPRFTGASDDPEEAER 320

Query: 308  ENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 LR +A  GLE RLA+  +A GY  +DYR+RL FEL VI RMKF GYFLIVADFI+
Sbjct: 321  AEVAELRRQAEEGLEERLAKLGMAPGYKEEDYRERLAFELGVIQRMKFPGYFLIVADFIK 380

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+++IPVGPGRGSGAGS+ AYALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQD
Sbjct: 381  WAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFDIDFCQD 440

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA+
Sbjct: 441  RREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPAN 500

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            P  L +AI ++ R +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLSQLVP
Sbjct: 501  PTPLSKAIEEEPRLQEEAEKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSQLVP 560

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+ +RG+ +DL+ IP D
Sbjct: 561  MYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVGKRGIHIDLASIPLD 620

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY  L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN R
Sbjct: 621  DPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYNAR 680

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+E+I SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK E
Sbjct: 681  KHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKAE 740

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MDKQ+ RF+ GA KNG+SK  A  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HYP
Sbjct: 741  MDKQRARFVDGAVKNGVSKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYP 800

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMTL+M N +KI  F QDA +  IQ++ PSV T    F+ GDNRIYYSLAA+KG
Sbjct: 801  VEFLAASMTLDMSNTDKINDFRQDAMRLGIQVVAPSVQTSHRHFETGDNRIYYSLAALKG 860

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG +   HI+    D+PF SLEDFC R+D K LNRRV ESL+ AGA DCFGY R +L+  
Sbjct: 861  VGESAVDHIVAVRGDRPFASLEDFCLRIDPKLLNRRVFESLIAAGAFDCFGYDRAELIGG 920

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            LD I  +AQ  ++N+ +   ++F     T  +KI L  ++   +S +   E +VLGFY S
Sbjct: 921  LDRILGFAQRAQENKVSGQSDMFGAGAATGPEKIALSPYTPWLASEKLHREFQVLGFYLS 980

Query: 965  GHPLDVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPLD Y  +L KM ++ + +            RLA  V SKQ++KTR G+++G V FS+
Sbjct: 981  AHPLDTYNNLLAKMRVQTFADFSAAVKKGAAAGRLAGTVTSKQERKTRTGNKMGIVAFSD 1040

Query: 1023 PAKEYEANFF 1032
             + ++EA  F
Sbjct: 1041 ASGQFEAVLF 1050


>gi|209548886|ref|YP_002280803.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv.
            trifolii WSM2304]
 gi|209534642|gb|ACI54577.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM2304]
          Length = 1165

 Score = 1192 bits (3085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 641/1031 (62%), Positives = 809/1031 (78%), Gaps = 6/1031 (0%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P F+HL+VHS+YSLLEGAL L  IL K   D QPAIAITDTNNLF ALEFSQKA   G+
Sbjct: 16   TPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNLFIALEFSQKAMDDGL 75

Query: 68   QPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            QPIIGCQ+ IDM+D L+   +G +     +PSIVLL +T  GY+RL+++VSR YL  +  
Sbjct: 76   QPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATDAGYERLVDVVSRAYLGGESN 135

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q++ I  SWL+E GTEGLI LTG  +GP+D A         E RLL  K+LFGDRLYV L
Sbjct: 136  QAIHIRASWLEEAGTEGLIALTGALTGPVDAAIKEGHPAQGEARLLALKRLFGDRLYVEL 195

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            QRH  YD+  E ++V LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS   R 
Sbjct: 196  QRHGTYDKRHEQKIVGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQ 304
            R+TPDHYLK+R+EM  +F+DLPEALENT+EIA+RCSF+L+   PILPRF     + ++ +
Sbjct: 256  RLTPDHYLKSRAEMAKLFADLPEALENTIEIAKRCSFVLKTRKPILPRFTGATDDAEEAE 315

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + E +ELR +AV GL++RLA   ++ GY   DYR+RLDFEL+VI RM+F GYFLIVADFI
Sbjct: 316  RAEASELRRQAVEGLDMRLATLGMSPGYEEMDYRERLDFELSVIERMRFPGYFLIVADFI 375

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 376  KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA
Sbjct: 436  DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +P  L +AI ++ + +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV
Sbjct: 496  NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP 
Sbjct: 556  PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGINVDLAAIPL 615

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN 
Sbjct: 616  DDKLTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNA 675

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK 
Sbjct: 676  RKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMD+Q+ERF+ GA KNG+SK  A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+MK HY
Sbjct: 736  EMDQQRERFVVGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTL+M N EK+  F QDA++  I+++ PSV T    F+ GDNRIYY+LAA+K
Sbjct: 796  PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHFQTGDNRIYYALAALK 855

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG +   HI+E   DKPF  +EDFC R+D +++NRRVLESL+FAGA DCFG  R QL  
Sbjct: 856  GVGESAVDHIVEVRGDKPFAGIEDFCLRIDPRQVNRRVLESLIFAGAFDCFGTDRAQLSA 915

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             LD I  YAQ  ++N+ +   +IF     +  +KI+L  FS   +S R   E +VLGFY 
Sbjct: 916  GLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKISLPPFSPWLASERLLKEFQVLGFYL 975

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGN--NIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            + HPLD Y  +L+KM ++ + E    I+    N RLA  V+SKQ++KTR G+++G + FS
Sbjct: 976  TAHPLDSYANLLQKMRVQTFAEFSQAIKQGAFNARLAGTVISKQERKTRTGNKMGIIVFS 1035

Query: 1022 EPAKEYEANFF 1032
            + + ++EA  F
Sbjct: 1036 DSSGQFEAVLF 1046


>gi|222085600|ref|YP_002544130.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter
            K84]
 gi|221723048|gb|ACM26204.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter
            K84]
          Length = 1187

 Score = 1190 bits (3080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 634/1031 (61%), Positives = 809/1031 (78%), Gaps = 7/1031 (0%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  IL K A D QPAIA+TDTNNLF ALEFSQKA   G+
Sbjct: 39   TPEFVHLRVHSAYSLLEGALPLKKILAKAAGDNQPAIAVTDTNNLFVALEFSQKAMDEGL 98

Query: 68   QPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            QPIIGCQ+ IDM+D ++   +G +     +PSIVL  +T  GY+RL++LVSR YL  +G 
Sbjct: 99   QPIIGCQVSIDMEDGVEGEKRGPQQALAKLPSIVLFAATERGYERLVDLVSRAYLGGEGN 158

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q+V I  SWL+EIGTEG+I LTG   GP+D A     +  A  RLL  K+LFGDRLY+ L
Sbjct: 159  QAVHITASWLEEIGTEGMIALTGSLGGPVDMALKEGHAPQALSRLLALKRLFGDRLYIEL 218

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            QRH  YDR  E +++ LAY HELPLVATN + F + +DY+AHD LMAVAH+ +VS   R 
Sbjct: 219  QRHGTYDRRHEQKMIALAYEHELPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDTRF 278

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE--KECDDIQ 304
            R+TPDHYLK+R++M  +F++LPEALENTVEIARRCSF+L+   PILPRF     + ++  
Sbjct: 279  RLTPDHYLKSRADMAKLFANLPEALENTVEIARRCSFVLKTRKPILPRFTGAADDEEEAD 338

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + E  ELR +A+ GL+ RLA   +A GY  +DYR+RL+FEL+VI RMKF GYFLIVADFI
Sbjct: 339  RAESAELRAQAIEGLDQRLASLGMAPGYVEKDYRERLEFELSVIERMKFPGYFLIVADFI 398

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 399  KWAKRHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 458

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA
Sbjct: 459  DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 518

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +P  L QAI ++ R +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV
Sbjct: 519  NPTPLHQAIKEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 578

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ +DL+ IP 
Sbjct: 579  PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVAKRGISIDLASIPL 638

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN 
Sbjct: 639  DDKKTYDMLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYNA 698

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+E+I SIHP ID +LKETQGVI+YQEQVMQ+AQ+LSGYSL EAD+LRRAMGKKIK 
Sbjct: 699  RKHGEEEIESIHPTIDYLLKETQGVIVYQEQVMQVAQVLSGYSLGEADLLRRAMGKKIKA 758

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMD+Q+ERF+ GA KNG+SK  +  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HY
Sbjct: 759  EMDQQRERFVDGAVKNGVSKGQSDVIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 818

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTL+M N EK+  F QDA++  I+++ PS+ T    F+ G+NRIYY+LAA+K
Sbjct: 819  PVEFLAASMTLDMANTEKVNDFRQDAKRLGIEVIAPSIQTSFRRFETGENRIYYALAALK 878

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG +   HI+E   D+PF  +EDFC R+D K++NRRVLESL+ AGA DCF   R QL+ 
Sbjct: 879  GVGESAVDHIVEVRGDQPFAGIEDFCLRIDPKQINRRVLESLIAAGAFDCFEIDRAQLIG 938

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             +D I  YAQ  ++N+ +   ++F     +  +KI+   F+   +S R   E +VLGFY 
Sbjct: 939  GIDRIMGYAQVAQENKRSGQHDMFG-SAASGPEKISFPPFTPWLASERLLREFQVLGFYL 997

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            + HPLD YK +L KM ++ + +  A ++   +N RLA  V+SKQ++KTR G+++G   FS
Sbjct: 998  TAHPLDTYKSVLDKMRVQNFADFSAAVKQGASNGRLAGTVISKQERKTRTGNKMGIFVFS 1057

Query: 1022 EPAKEYEANFF 1032
            + + ++EA  F
Sbjct: 1058 DASGQFEAVLF 1068


>gi|227821642|ref|YP_002825612.1| DNA polymerase III subunit alpha [Sinorhizobium fredii NGR234]
 gi|227340641|gb|ACP24859.1| DNA polymerase III, alpha subunit [Sinorhizobium fredii NGR234]
          Length = 1165

 Score = 1190 bits (3080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 647/1030 (62%), Positives = 799/1030 (77%), Gaps = 6/1030 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS++SLLEGAL L  I+ K  AD+QPAI I DTNNLF+ALEFSQKA   G+Q
Sbjct: 17   PQFVHLRVHSAFSLLEGALPLKKIIAKAVADEQPAIGIADTNNLFAALEFSQKAADDGLQ 76

Query: 69   PIIGCQLDIDMQDNLKMTNQGK-TPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQL IDM+D  +   +        +PSIVL+ +T  GY RL++LVSR YL  +G Q
Sbjct: 77   PIIGCQLSIDMEDEAEGERRSHAQQLAKLPSIVLIAATDAGYTRLVDLVSRAYLEGEGHQ 136

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            +VR+  SWL   GTEGLI LTG  SGP+D A     + +AE RL T  +LFGDRLYV LQ
Sbjct: 137  AVRVTRSWLAAGGTEGLIALTGAGSGPVDLALKAGLAALAEARLKTLVELFGDRLYVELQ 196

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  YDR +E+++V LAY H++PLVATN + F S  DY+AHD LMAVAH+ VVS   R R
Sbjct: 197  RHGSYDRRQENRLVDLAYRHDIPLVATNEAFFPSPADYDAHDALMAVAHNAVVSDDRRFR 256

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE- 306
            +T DHYLK+R EM ++F+DLPEALENTVEIARRCSF+L+   PILPRF     D ++ E 
Sbjct: 257  LTSDHYLKSRKEMAALFADLPEALENTVEIARRCSFMLKTRGPILPRFTGASDDPVEAER 316

Query: 307  -EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E  ELR +A  GLE RL++  +A GY  +DYR+RL FEL VI RMKF GYFLIVADFI+
Sbjct: 317  AESAELRRQAEEGLEQRLSRLGMAPGYKEEDYRERLAFELGVIERMKFPGYFLIVADFIK 376

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+++IPVGPGRGSGAGS+ AYALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQD
Sbjct: 377  WAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFDIDFCQD 436

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA+
Sbjct: 437  RREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPAN 496

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            P  L +AI ++ R +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLSQLVP
Sbjct: 497  PTPLSKAIEEEPRLQEEAEKEPVVGRLLDIAQKIEGLYRHASTHAAGIVIGDRPLSQLVP 556

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP D
Sbjct: 557  MYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVAKRGIAVDLASIPLD 616

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN R
Sbjct: 617  DPKTYEILSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYNAR 676

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+E+I SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIKEE
Sbjct: 677  KHGEEEIESIHPKIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKEE 736

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MDKQ+ RF+ GA  NG+ K  A  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HYP
Sbjct: 737  MDKQRARFVEGAVGNGVVKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYP 796

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMTL+M N EKI  F QDA +  IQ++ PSV T    F+ GDNRIYYSLAAIKG
Sbjct: 797  VEFLAASMTLDMSNTEKINDFRQDAIRLGIQVIAPSVQTSFRLFETGDNRIYYSLAAIKG 856

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG +   HI+    D+PF SLEDFC R+D K LNRRV ESL+ AGA DCFGY R +L+  
Sbjct: 857  VGESAVEHIVAVRGDRPFASLEDFCLRIDPKLLNRRVFESLIAAGAFDCFGYDRAELIGG 916

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            LD I  +AQ  ++N+ +   ++F     T  +KI L  ++   +S +   E +VLGFY S
Sbjct: 917  LDRILGFAQRAQENKLSGQSDMFGAGAATGPEKIALPVYTPWLASEKLHREFQVLGFYLS 976

Query: 965  GHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPLD Y  +L KM ++ + + S A  +G +  RLA  V SKQ++KTR G+++G V FS+
Sbjct: 977  AHPLDTYNKLLAKMRVQTFADFSAAVKKGASAGRLAGTVTSKQERKTRTGNKMGIVAFSD 1036

Query: 1023 PAKEYEANFF 1032
             + ++EA  F
Sbjct: 1037 ASGQFEAVLF 1046


>gi|163759322|ref|ZP_02166408.1| DNA polymerase III subunit alpha [Hoeflea phototrophica DFL-43]
 gi|162283726|gb|EDQ34011.1| DNA polymerase III subunit alpha [Hoeflea phototrophica DFL-43]
          Length = 1189

 Score = 1179 bits (3051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 606/1031 (58%), Positives = 776/1031 (75%), Gaps = 8/1031 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHSSYSLLEGAL +  ++ +  AD+QPA+AITDTNNLF ALEFS KA  AGIQ
Sbjct: 41   PGFVHLRVHSSYSLLEGALPIKTLIKRALADEQPALAITDTNNLFGALEFSIKAMEAGIQ 100

Query: 69   PIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            P+IGCQLDIDM+D      +  +     +PSIVL  STA GY+RL  LVSR YL     +
Sbjct: 101  PLIGCQLDIDMEDGAASERRSHRDQLQRLPSIVLYASTATGYERLTALVSRAYLEGDSVE 160

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I +SWL+E G +GLI LTG   GP+D+    +    A +RL   K +F DR+Y+ LQ
Sbjct: 161  RPHILMSWLEE-GADGLIALTGSVKGPVDQCIRESHPDRAAERLNRLKTVFEDRVYIELQ 219

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R +GYDR  ES+++ LAY  ++PLVATN + F + +D+EAHD LMAVA + V+S   RPR
Sbjct: 220  RQQGYDRAHESKMIALAYAADVPLVATNEAFFPTPDDFEAHDALMAVAANAVMSDDRRPR 279

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---EKECDDIQ 304
            ++ D+ LK+R+EM ++F+D+PEAL NT+EIA+RCS I++   PILPRF    E++ D   
Sbjct: 280  LSVDNCLKSRAEMTALFADVPEALRNTIEIAQRCSAIVETRPPILPRFTGGGEEDPDAAL 339

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              E  ELR ++  GLE RL +  +A+GY   DYR+RL  EL++I  MKF GYFLIVADFI
Sbjct: 340  AAEAAELRRQSEEGLERRLERIGLAEGYTHDDYRERLKTELDIIENMKFPGYFLIVADFI 399

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP R+SMPDFDIDFCQ
Sbjct: 400  KWAKDHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPARVSMPDFDIDFCQ 459

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVIRYVQ KYG E+V QIITFGSLQA+AALRDVGR L+MPY  VDR+CKL+PN+PA
Sbjct: 460  DRREEVIRYVQKKYGREQVGQIITFGSLQARAALRDVGRVLEMPYGLVDRICKLVPNNPA 519

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +P  L +AI ++ RF E    +P+V+RLL+I+QKLEGLYRHASTHAAGIVIGDRPLSQLV
Sbjct: 520  NPTPLNKAIEEEPRFAEEMEKEPAVERLLDIAQKLEGLYRHASTHAAGIVIGDRPLSQLV 579

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++ F+A+RG+ +DL  +P 
Sbjct: 580  PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVGFIAKRGITIDLEGLPL 639

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD IEDIIALV+LYRPGP++NI VYN 
Sbjct: 640  DDQPTYEMLSRGETVGVFQVESAGMRKALIGMRPDRIEDIIALVALYRPGPMENIPVYNA 699

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+E++ SIHP ID +L ETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKKIKE
Sbjct: 700  RKHGEEELASIHPKIDGLLAETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKIKE 759

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMDKQ+ RF+ GA +  +SK  A  IF+LLAKFA+YGFNKSHAAAY ++SYQTA++K HY
Sbjct: 760  EMDKQRARFVEGAVERDVSKPQADMIFDLLAKFANYGFNKSHAAAYGIVSYQTAYLKAHY 819

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTL+M N +K+  F QDA++  I++ PPSV T    F+ G+NRIYY+LAAIK
Sbjct: 820  PVEFLAASMTLDMSNTDKLNDFRQDAKRLGIEVAPPSVQTSFRHFETGENRIYYALAAIK 879

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG     HI+E   D  F SLEDFC R+D +++NRRVLESL+ AGALDCFG  R  L+ 
Sbjct: 880  GVGDAAVEHIVEVRGDTEFASLEDFCVRIDPRQVNRRVLESLITAGALDCFGLDRAALVA 939

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             LD I  +AQ  ++NR +   ++F       ++ I L   +    + +   E + LGFY 
Sbjct: 940  GLDRILGFAQRAQENRISGQSDMFGAGASESAETIHLPDATPWLPAEKLHREYQALGFYL 999

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            S HPLD Y  +L KM ++ + +   +++ G    RLA  V SKQ++KT+ G+++G V FS
Sbjct: 1000 SAHPLDSYADLLNKMRVQNWADFQVSVKAGATAGRLAGTVTSKQERKTKTGNKMGIVAFS 1059

Query: 1022 EPAKEYEANFF 1032
            + + +YEA  F
Sbjct: 1060 DSSGQYEAVLF 1070


>gi|306843761|ref|ZP_07476360.1| DNA polymerase III, alpha subunit [Brucella sp. BO1]
 gi|306275952|gb|EFM57665.1| DNA polymerase III, alpha subunit [Brucella sp. BO1]
          Length = 1163

 Score = 1168 bits (3023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 593/1033 (57%), Positives = 762/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD  PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADDAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRAVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVSL QAI  + +  E R  +P V RLL+I+ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDIALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|256369256|ref|YP_003106764.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915]
 gi|255999416|gb|ACU47815.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915]
          Length = 1163

 Score = 1168 bits (3021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 592/1033 (57%), Positives = 762/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD  PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADDAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|225627320|ref|ZP_03785357.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo]
 gi|225617325|gb|EEH14370.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo]
          Length = 1190

 Score = 1168 bits (3021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 592/1033 (57%), Positives = 763/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 41   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 100

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 101  GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 160

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 161  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 219

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 220  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 279

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 280  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 339

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 340  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 399

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 400  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 459

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 460  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 519

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 520  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 579

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 580  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 639

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 640  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 699

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 700  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 759

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 760  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 819

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 820  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 879

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 880  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 939

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 940  CAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVGF 998

Query: 962  YFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 999  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1058

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1059 LSDASGQFEAVLF 1071


>gi|161618789|ref|YP_001592676.1| DNA polymerase III subunit alpha [Brucella canis ATCC 23365]
 gi|254704138|ref|ZP_05165966.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686]
 gi|256044502|ref|ZP_05447406.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str.
            Rev.1]
 gi|256060935|ref|ZP_05451093.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33]
 gi|256113358|ref|ZP_05454216.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str.
            Ether]
 gi|260563856|ref|ZP_05834342.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M]
 gi|260566613|ref|ZP_05837083.1| DNA polymerase III subunit alpha [Brucella suis bv. 4 str. 40]
 gi|261324935|ref|ZP_05964132.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33]
 gi|261754804|ref|ZP_05998513.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686]
 gi|265990926|ref|ZP_06103483.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str.
            Rev.1]
 gi|265994764|ref|ZP_06107321.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str.
            Ether]
 gi|161335600|gb|ABX61905.1| DNA polymerase III, alpha subunit [Brucella canis ATCC 23365]
 gi|260153872|gb|EEW88964.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M]
 gi|260156131|gb|EEW91211.1| DNA polymerase III subunit alpha [Brucella suis bv. 4 str. 40]
 gi|261300915|gb|EEY04412.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33]
 gi|261744557|gb|EEY32483.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686]
 gi|262765877|gb|EEZ11666.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str.
            Ether]
 gi|263001710|gb|EEZ14285.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str.
            Rev.1]
 gi|326408847|gb|ADZ65912.1| DNA polymerase III subunit alpha [Brucella melitensis M28]
 gi|326538562|gb|ADZ86777.1| DNA polymerase III, alpha subunit [Brucella melitensis M5-90]
          Length = 1163

 Score = 1167 bits (3020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 592/1033 (57%), Positives = 763/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|17987420|ref|NP_540054.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M]
 gi|17983111|gb|AAL52318.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str. 16M]
          Length = 1178

 Score = 1167 bits (3020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 592/1033 (57%), Positives = 763/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 29   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 88

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 89   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 148

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 149  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 207

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 208  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 267

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 268  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 327

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 328  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 387

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 388  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 447

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 448  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 507

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 508  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 567

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 568  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 627

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 628  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 687

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 688  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 747

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 748  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 807

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 808  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 867

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 868  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 927

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 928  CAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVGF 986

Query: 962  YFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 987  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1046

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1047 LSDASGQFEAVLF 1059


>gi|294852181|ref|ZP_06792854.1| DNA polymerase III subunit alpha [Brucella sp. NVSL 07-0026]
 gi|294820770|gb|EFG37769.1| DNA polymerase III subunit alpha [Brucella sp. NVSL 07-0026]
          Length = 1188

 Score = 1167 bits (3020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 591/1033 (57%), Positives = 762/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 39   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 98

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 99   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 158

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 159  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 217

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 218  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 277

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 278  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 337

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 338  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 397

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 398  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 457

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 458  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 517

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 518  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 577

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLK LT+LQ ++  +A++G+ +DLS +
Sbjct: 578  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKMLTVLQTAVKLVARKGIDIDLSHL 637

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 638  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 697

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 698  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 757

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 758  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 817

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 818  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 877

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 878  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 937

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 938  CAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVGF 996

Query: 962  YFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 997  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1056

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1057 LSDASGQFEAVLF 1069


>gi|254706961|ref|ZP_05168789.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10]
 gi|254709931|ref|ZP_05171742.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94]
 gi|256031424|ref|ZP_05445038.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1]
 gi|256159545|ref|ZP_05457313.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1]
 gi|256254832|ref|ZP_05460368.1| DNA polymerase III subunit alpha [Brucella ceti B1/94]
 gi|261222013|ref|ZP_05936294.1| DNA polymerase III subunit alpha [Brucella ceti B1/94]
 gi|261314424|ref|ZP_05953621.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10]
 gi|261317477|ref|ZP_05956674.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94]
 gi|265988513|ref|ZP_06101070.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1]
 gi|265997977|ref|ZP_06110534.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1]
 gi|260920597|gb|EEX87250.1| DNA polymerase III subunit alpha [Brucella ceti B1/94]
 gi|261296700|gb|EEY00197.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94]
 gi|261303450|gb|EEY06947.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10]
 gi|262552445|gb|EEZ08435.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1]
 gi|264660710|gb|EEZ30971.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1]
          Length = 1163

 Score = 1167 bits (3020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 592/1033 (57%), Positives = 763/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|260168558|ref|ZP_05755369.1| DNA polymerase III subunit alpha [Brucella sp. F5/99]
 gi|261758031|ref|ZP_06001740.1| DNA polymerase III subunit alpha [Brucella sp. F5/99]
 gi|261738015|gb|EEY26011.1| DNA polymerase III subunit alpha [Brucella sp. F5/99]
          Length = 1163

 Score = 1167 bits (3019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 592/1033 (57%), Positives = 763/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|23501712|ref|NP_697839.1| DNA polymerase III subunit alpha [Brucella suis 1330]
 gi|23347636|gb|AAN29754.1| DNA polymerase III, alpha subunit [Brucella suis 1330]
          Length = 1163

 Score = 1167 bits (3019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 591/1033 (57%), Positives = 763/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA++K 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYIKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|306841939|ref|ZP_07474617.1| DNA polymerase III, alpha subunit [Brucella sp. BO2]
 gi|306287972|gb|EFM59380.1| DNA polymerase III, alpha subunit [Brucella sp. BO2]
          Length = 1163

 Score = 1167 bits (3019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 591/1033 (57%), Positives = 762/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD  PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADDAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  R+   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARMAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRAVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPKETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|153009730|ref|YP_001370945.1| DNA polymerase III subunit alpha [Ochrobactrum anthropi ATCC 49188]
 gi|151561618|gb|ABS15116.1| DNA polymerase III, alpha subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 1163

 Score = 1166 bits (3017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 598/1032 (57%), Positives = 776/1032 (75%), Gaps = 10/1032 (0%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   G+
Sbjct: 16   TPRFVHLRVHSAYSLLEGALPLGKIIKQAIADEAPAIAVTDTNNLFGALEFAQKASKDGL 75

Query: 68   QPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            QPIIGCQ+DI   D+        +     +  +VLL +T EGY  ++ LVSR +L     
Sbjct: 76   QPIIGCQVDIAFGDHNDNGRSVNRRVALDLAPVVLLAATEEGYANIVRLVSRAFLETPAG 135

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V +  SWL  + ++ +I+L+GG+ GPI RAF  +    AE RL   ++ FGDRLYV L
Sbjct: 136  DPVHVEASWLPPL-SKDVIVLSGGALGPIGRAFAADRPDRAEARLGFLREAFGDRLYVEL 194

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            QR  GY+R  E++ V LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  DR 
Sbjct: 195  QRQAGYNRALEAKTVALAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDDRR 254

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ-- 304
            R+TPDH++K+R+EM ++F+DLPEAL+NTVEIA RCS+  Q  APILPRF   E DD +  
Sbjct: 255  RLTPDHHMKSRAEMAALFADLPEALDNTVEIAERCSWYTQTRAPILPRF-TGESDDAEAA 313

Query: 305  -KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +EE +EL  +A  GL++RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVADF
Sbjct: 314  VQEEADELARQAREGLKMRLETVGLAEGYTTEQYAERLEYEIGIITRMKFPGYFLIVADF 373

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFC
Sbjct: 374  IKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDFC 433

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +P
Sbjct: 434  QDRREEVIRYVQGKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQNP 493

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+L
Sbjct: 494  ANPVSLAQAIDTEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSEL 553

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++  +A++GV++DLS +P
Sbjct: 554  VPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLETAVKLVARKGVEIDLSHVP 613

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD IEDIIALV+LYRPGP++NI  YN
Sbjct: 614  LDDELTYEMLSRGETVGVFQVESAGMRKALLGMRPDRIEDIIALVALYRPGPMENIPTYN 673

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI+
Sbjct: 674  ARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIR 733

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK H
Sbjct: 734  EEMDKQRVRFVDGAIEGGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKAH 793

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YPVEF+AASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAAI
Sbjct: 794  YPVEFIAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVMTSFRPFEVGEKQIFYSLAAI 853

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KGVG     HI++  A+KPF+SLEDFC RVD + +NRRVLESL+ AGA+DCFG  R  + 
Sbjct: 854  KGVGEAAVDHIVDVRAEKPFESLEDFCERVDPRIVNRRVLESLINAGAMDCFGRERPAMS 913

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              +D I  +AQ  ++N  +   +IF    G   + + L + +    S     E + +GFY
Sbjct: 914  AGMDRIMGFAQRTQENAASGQSDIFGL-SGAPKETLILPQAAPWLPSEMLHREFQAVGFY 972

Query: 963  FSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTF 1020
             S HPLD Y+ +L +M ++ + + S A  RG N  RLA  V ++Q++KTR G+++G V  
Sbjct: 973  LSAHPLDEYRDVLNRMRVQSWADFSAAVKRGANAGRLAGTVTARQERKTRTGNKMGIVQL 1032

Query: 1021 SEPAKEYEANFF 1032
            S+ + ++EA  F
Sbjct: 1033 SDASGQFEAVLF 1044


>gi|148559880|ref|YP_001258802.1| DNA polymerase III subunit alpha [Brucella ovis ATCC 25840]
 gi|148371137|gb|ABQ61116.1| DNA polymerase III, alpha subunit [Brucella ovis ATCC 25840]
          Length = 1163

 Score = 1166 bits (3017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 592/1033 (57%), Positives = 763/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRIVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGGDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|254718932|ref|ZP_05180743.1| DNA polymerase III subunit alpha [Brucella sp. 83/13]
 gi|265983919|ref|ZP_06096654.1| DNA polymerase III subunit alpha [Brucella sp. 83/13]
 gi|306838837|ref|ZP_07471668.1| DNA polymerase III, alpha subunit [Brucella sp. NF 2653]
 gi|264662511|gb|EEZ32772.1| DNA polymerase III subunit alpha [Brucella sp. 83/13]
 gi|306406121|gb|EFM62369.1| DNA polymerase III, alpha subunit [Brucella sp. NF 2653]
          Length = 1163

 Score = 1166 bits (3016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 591/1033 (57%), Positives = 763/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  R+   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARMAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  ALQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPKETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|225852339|ref|YP_002732572.1| DNA polymerase III subunit alpha [Brucella melitensis ATCC 23457]
 gi|256264162|ref|ZP_05466694.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 2 str.
            63/9]
 gi|225640704|gb|ACO00618.1| DNA polymerase III, alpha subunit [Brucella melitensis ATCC 23457]
 gi|263094380|gb|EEZ18225.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 2 str.
            63/9]
          Length = 1163

 Score = 1165 bits (3014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 592/1033 (57%), Positives = 763/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAALF 1044


>gi|254713932|ref|ZP_05175743.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1]
 gi|254717010|ref|ZP_05178821.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1]
 gi|261218817|ref|ZP_05933098.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1]
 gi|261321684|ref|ZP_05960881.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1]
 gi|260923906|gb|EEX90474.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1]
 gi|261294374|gb|EEX97870.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1]
          Length = 1163

 Score = 1165 bits (3014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 591/1033 (57%), Positives = 762/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKG G     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGAGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|147678555|ref|YP_001212770.1| DNA polymerase III DnaE [Pelotomaculum thermopropionicum SI]
 gi|146274652|dbj|BAF60401.1| DNA polymerase III, alpha subunit [Pelotomaculum thermopropionicum
            SI]
          Length = 1196

 Score = 1165 bits (3013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1031 (38%), Positives = 608/1031 (58%), Gaps = 26/1031 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +HS YSLL+GA  +N+ + + +  Q PA+AITD   +F  ++F +    AGI+P+
Sbjct: 15   FVHLHLHSEYSLLDGAARINDAVKRASEMQMPALAITDHGVMFGTVDFYKACKKAGIKPV 74

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +  +    M ++       +  +VLL    EGY+ L+ LVS  ++        R
Sbjct: 75   LGCEVYVAPRS---MDDRTPKIDDNLSHLVLLAENEEGYRNLLNLVSMAFIRG-FYYKPR 130

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            +    L E  + GLI L+G  +G +        ++ A +    ++ +F  +  ++ LQ H
Sbjct: 131  VDKELLSE-HSRGLIALSGCIAGEVSARILAGENEKARQAAGDYRDIFGPENFFLELQDH 189

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +   +++++     +PLV TN+  ++   D E  DVL+A+     V    R + 
Sbjct: 190  GFAEQRKVNREMLKIHKEMNIPLVVTNDVHYVRRGDAETQDVLLAIQTGKSVDDPGRMKF 249

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              +  YLK+  EM  +F +L  AL NTVEIA RC+  ++     LP +   E  D     
Sbjct: 250  QSEELYLKSPEEMNLLFGELSGALRNTVEIAGRCNVEIEFGKYYLPHYPVPEGYDA---- 305

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L      G            G  +   ++RL++EL VI +M +S YFLIV DFI +A
Sbjct: 306  DTYLAELCYQGARRIY-------GELSDGVKKRLEYELGVIKQMGYSAYFLIVWDFIHYA 358

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++N IPVGPGRGS AGS+ AY+L IT IDPL++ LLFERFLNP+R+SMPD D+DFC +RR
Sbjct: 359  RQNGIPVGPGRGSAAGSLVAYSLGITSIDPLKYGLLFERFLNPERVSMPDIDVDFCFERR 418

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E+I YV  +YG +RVAQIITFG++ A+AA+RDVGRAL MPY +VDR+ KL+P +    +
Sbjct: 419  GEIIDYVVRRYGADRVAQIITFGTMAARAAIRDVGRALNMPYGEVDRVAKLVPMELHMTI 478

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+ +    RE     P V +L++ +  LEG+ RHASTHAAG+VI   PL+  +P+Y+
Sbjct: 479  E-KALNESPELRELYDQRPEVRKLIDTAAALEGMPRHASTHAAGVVITPEPLTNYLPLYK 537

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                    TQF M  +E+ GL+K D LGL+TLT++  +L  + +  G ++D+  IP DD 
Sbjct: 538  AT-DGPVTTQFAMGTVEELGLLKMDLLGLRTLTVISDALRLIKESTGEELDIERIPVDDQ 596

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
            +TY +L    T G+FQLESSGMR  L  ++P+  EDI+ALV+LYRPGP+ + +V  +   
Sbjct: 597  KTYQMLARGETAGVFQLESSGMRSILRDLRPEVFEDIVALVALYRPGPLGSGMVDDFIKN 656

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G +K   +HP ++P+LK+T GVI+YQEQVM+IA  L+G+SL EAD+LRRAMGKK  E 
Sbjct: 657  KHGFKKTKYLHPRLEPILKDTYGVILYQEQVMRIASDLAGFSLGEADLLRRAMGKKKPEI 716

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +   + +FI GA++NG+    A  IF+L+  FA YGFNKSH+AAYA++SYQTA++K +YP
Sbjct: 717  IAGLRSQFIEGAARNGVDGETAGQIFDLMEYFAGYGFNKSHSAAYALVSYQTAYLKANYP 776

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            ++F+AA +T   DN +K+  + ++ R+  I+++PP VN     F V  N+I + LAA+K 
Sbjct: 777  LQFMAALLTSVKDNTDKVAAYIEECRRLGIEVLPPDVNESRESFTVAGNKIRFGLAAVKN 836

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG      I+ A   D PF    DFC R+D++ +N+RVLESL+  GA D  GY R QL+ 
Sbjct: 837  VGMGAVDSIIRAREKDGPFSDYADFCRRLDTRVVNKRVLESLIKCGAFDSLGYRRAQLMA 896

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKG-TFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            ++D+    AQ  ++ R N   ++     G T S  I+  +            E+  LG Y
Sbjct: 897  AVDSGLALAQQSQRERENGQLSLLDFFGGSTDSVSISFPEVGEYPEDELLAMEKETLGLY 956

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             SGHPL  Y+  L ++      E       + + L  ++   ++  TR+G  + ++T  +
Sbjct: 957  ISGHPLSRYREALNRLTTVKTVEITDLPDNSEVVLGGLITDVKKINTRRGEVMAFLTLED 1016

Query: 1023 PAKEYEANFFP 1033
                 E   FP
Sbjct: 1017 LTGTVEVVVFP 1027


>gi|163843098|ref|YP_001627502.1| DNA polymerase III subunit alpha [Brucella suis ATCC 23445]
 gi|163673821|gb|ABY37932.1| DNA polymerase III, alpha subunit [Brucella suis ATCC 23445]
          Length = 1163

 Score = 1164 bits (3012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 592/1033 (57%), Positives = 764/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF+ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFAALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|254701591|ref|ZP_05163419.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513]
 gi|261752144|ref|ZP_05995853.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513]
 gi|261741897|gb|EEY29823.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513]
          Length = 1163

 Score = 1164 bits (3012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 590/1033 (57%), Positives = 761/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPR   +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRLTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTIT +DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITGVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|237815260|ref|ZP_04594258.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A]
 gi|237790097|gb|EEP64307.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A]
          Length = 1190

 Score = 1163 bits (3010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 590/1033 (57%), Positives = 761/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 41   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 100

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 101  GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 160

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 161  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 219

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + F   ED+EAHD L+A+A   ++S  D
Sbjct: 220  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFPKAEDFEAHDALLAIAEGQILSNDD 279

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 280  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 339

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 340  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 399

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 400  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 459

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 460  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 519

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 520  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 579

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 580  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 639

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 640  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 699

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 700  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 759

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 760  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 819

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 820  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 879

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IK VG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 880  IKSVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 939

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 940  CAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVGF 998

Query: 962  YFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 999  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1058

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1059 LSDASGQFEAVLF 1071


>gi|62289774|ref|YP_221567.1| DNA polymerase III subunit alpha [Brucella abortus bv. 1 str. 9-941]
 gi|82699702|ref|YP_414276.1| DNA polymerase III subunit alpha [Brucella melitensis biovar Abortus
            2308]
 gi|189024017|ref|YP_001934785.1| DNA polymerase III subunit alpha [Brucella abortus S19]
 gi|254697213|ref|ZP_05159041.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str.
            86/8/59]
 gi|254730110|ref|ZP_05188688.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292]
 gi|260545478|ref|ZP_05821219.1| DNA polymerase III subunit alpha subunit [Brucella abortus NCTC 8038]
 gi|260757800|ref|ZP_05870148.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292]
 gi|260761623|ref|ZP_05873966.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str.
            86/8/59]
 gi|62195906|gb|AAX74206.1| DnaE-2, DNA polymerase III, alpha subunit [Brucella abortus bv. 1
            str. 9-941]
 gi|82615803|emb|CAJ10801.1| Phosphoesterase PHP, N-terminal:PHP domain C-terminal region:OB-fold
            nucleic acid binding domain:DNA polymerase III alpha sub
            [Brucella melitensis biovar Abortus 2308]
 gi|189019589|gb|ACD72311.1| DNA polymerase III subunit alpha [Brucella abortus S19]
 gi|260096885|gb|EEW80760.1| DNA polymerase III subunit alpha subunit [Brucella abortus NCTC 8038]
 gi|260668118|gb|EEX55058.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292]
 gi|260672055|gb|EEX58876.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str.
            86/8/59]
          Length = 1163

 Score = 1163 bits (3009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 590/1033 (57%), Positives = 761/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + F   ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFPKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IK VG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKSVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|254693562|ref|ZP_05155390.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya]
 gi|261213827|ref|ZP_05928108.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya]
 gi|260915434|gb|EEX82295.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya]
          Length = 1163

 Score = 1163 bits (3008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 590/1033 (57%), Positives = 762/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPE+LENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPESLENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVSL QAI  + +  E R  +  V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKESVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|298291824|ref|YP_003693763.1| DNA polymerase III subunit alpha [Starkeya novella DSM 506]
 gi|296928335|gb|ADH89144.1| DNA polymerase III, alpha subunit [Starkeya novella DSM 506]
          Length = 1149

 Score = 1163 bits (3008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 561/1035 (54%), Positives = 744/1035 (71%), Gaps = 18/1035 (1%)

Query: 3    QYLEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            Q + ++ + FVHL VHSS+SLLEGAL++  + +    D+QPAIA+TDT NLF ALEFS+K
Sbjct: 4    QDMTQADAGFVHLHVHSSFSLLEGALTIGKLAELAKKDRQPAIALTDTGNLFGALEFSEK 63

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
               +GIQPI+GC L +D          G+      P +VLL  + EG++ L+ELVSR +L
Sbjct: 64   MAGSGIQPILGCALSVDFPGPAPRGPAGQQR----PRVVLLAMSEEGWKNLMELVSRSFL 119

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                  +  I L WL E  T GLI LTGG SGPIDRA    S   AE+RL T  +LFGDR
Sbjct: 120  DTASDGAPHIKLDWL-EGRTGGLIALTGGPSGPIDRALAAGSHDQAEQRLHTLAELFGDR 178

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            LYV +QRH    +R  E+ +++LAY  +LPLVATN   F  ++DYEAHD L+ +A   +V
Sbjct: 179  LYVEIQRHGVAEERRVETALIELAYRLDLPLVATNEPFFAGQDDYEAHDALICIAEGRLV 238

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            ++ DR ++TP+H  + R+EM+++F+DLPEAL NTVEIARRC++  +   PILPRF     
Sbjct: 239  AEGDRRQLTPEHRFRTRAEMMALFADLPEALANTVEIARRCAYRPRTVKPILPRF----- 293

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              ++++E  ELR +A  GL  RLA    A G   +DY  RL FEL++I +MKF GYFLIV
Sbjct: 294  -TMERDEAEELRVQAEEGLRKRLAVHGPAPGLAEKDYEDRLAFELSIIEKMKFPGYFLIV 352

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+WAK   IPVGPGRGSGAGS+ AY+LTITD+DPLRF LLFERFLNP+R+SMPDFDI
Sbjct: 353  SDFIKWAKAQGIPVGPGRGSGAGSLVAYSLTITDLDPLRFGLLFERFLNPERVSMPDFDI 412

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RRDEVIRYVQ +YG ++VAQIITFG+LQA+  LRDVGR L+MPY QVD+LCKL+P
Sbjct: 413  DFCQERRDEVIRYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLCKLVP 472

Query: 481  NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +PA+PV+L QAI  + R +     +P V R  +I+ KLEGL RHASTHAAGIVIGDR L
Sbjct: 473  QNPANPVTLTQAIEGEPRLQAESEQNPVVKRAFDIATKLEGLNRHASTHAAGIVIGDRKL 532

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            S LVP+YRD RSD+PVTQ+NMKW+E+AGL+KFDFLGLKTLT+LQ ++  +AQ G+++DLS
Sbjct: 533  SNLVPLYRDPRSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTVLQTAVRLVAQLGIQLDLS 592

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP +D +TY +LT   T+G+FQ+ESSGMR+AL  M+PD +EDIIALV+LYRPGP+ NI 
Sbjct: 593  TIPLNDEKTYAMLTRGETVGVFQVESSGMRRALVDMKPDRLEDIIALVALYRPGPMANIP 652

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            VY   KNG E+ V  HP ++  LKET GVIIYQEQVMQIAQ LSGYSL EAD+LRRAMGK
Sbjct: 653  VYCAVKNGHEQAVYAHPALESSLKETYGVIIYQEQVMQIAQTLSGYSLGEADLLRRAMGK 712

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KI+ EMDKQ+ERF+SGA + G++K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+M
Sbjct: 713  KIRAEMDKQRERFVSGAVERGVAKAKASEIFDLLAKFADYGFNKSHAAAYALVSYQTAYM 772

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K +Y  EFLAASMTL+M N +K+ +F Q+A++  I+++PPSVN    +F V + RI Y+L
Sbjct: 773  KANYATEFLAASMTLDMGNTDKLAEFRQEAQRLGIEVVPPSVNHSGREFAVKEGRILYAL 832

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AAIKGVG      I+EA  D+PF SL DF +R+++K LN+R +ESLV AGA D    +R 
Sbjct: 833  AAIKGVGVHAVEAIVEARGDRPFASLSDFAARINAKALNKRTMESLVNAGAFDALEPNRA 892

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            +   ++D+I  +A  V         N+F       + ++ +   +    + + + E   +
Sbjct: 893  RAAAAIDSILAHAASVGAEAAIGQGNMFGGPAA--ATELPIPNATPWLPAEKLQREYDAI 950

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGW 1017
            GF+ +GHPLD Y   L ++ ++ + +   ++R  +I  RLAA VVS+Q+++T+ G+++G 
Sbjct: 951  GFFLTGHPLDEYGKALDRLRVQRWSDFTRSVRAGSIAGRLAATVVSRQERRTKTGNKMGI 1010

Query: 1018 VTFSEPAKEYEANFF 1032
            V  S+P+ ++EA  F
Sbjct: 1011 VGLSDPSGQFEAVLF 1025


>gi|254689079|ref|ZP_05152333.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870]
 gi|256257328|ref|ZP_05462864.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68]
 gi|260754577|ref|ZP_05866925.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870]
 gi|260883604|ref|ZP_05895218.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68]
 gi|297248177|ref|ZP_06931895.1| DNA polymerase III subunit alpha [Brucella abortus bv. 5 str. B3196]
 gi|260674685|gb|EEX61506.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870]
 gi|260873132|gb|EEX80201.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68]
 gi|297175346|gb|EFH34693.1| DNA polymerase III subunit alpha [Brucella abortus bv. 5 str. B3196]
          Length = 1163

 Score = 1163 bits (3008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 590/1033 (57%), Positives = 761/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + F   ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFPKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVSL QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD R D+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRFDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + + S A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|148264552|ref|YP_001231258.1| DNA polymerase III, alpha subunit [Geobacter uraniireducens Rf4]
 gi|146398052|gb|ABQ26685.1| DNA polymerase III, alpha subunit [Geobacter uraniireducens Rf4]
          Length = 1157

 Score = 1162 bits (3006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1037 (40%), Positives = 623/1037 (60%), Gaps = 19/1037 (1%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
               +FVHL +H+ YSLL+GA+ L +++ K    + PA+AITD  ++F A+EF  K    G
Sbjct: 2    SEANFVHLHLHTQYSLLDGAIRLGDLVKKAKGYEMPAVAITDHGSMFGAIEFYTKCKDKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG ++ I         +       +   ++LL    +GY+ L  LVS  Y  +   
Sbjct: 62   IKPIIGSEVYIAPGSRFSKESGNGHESTSSYHLILLCENLQGYKNLSWLVSAGY-KEGFY 120

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               RI    L +  +EGLI L+    G +      N  + A      + ++F DR Y+ L
Sbjct: 121  YKPRIDKEILAQ-HSEGLIALSACLKGEVAYQCGRNRVEDAIATARWYSEIFPDRYYIEL 179

Query: 187  QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q +   ++     +++ LA    LPLVATN+  +L+ ED +AH+VL+ +     ++  +R
Sbjct: 180  QENTLPEQDLVNKRLLDLAAELSLPLVATNDCHYLNREDAKAHEVLLCIQTGKTMNDPNR 239

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               + +  Y K+  EM + F   PEA+ NTV IA RC+  L       P++I+       
Sbjct: 240  MHFSAEEFYFKSPQEMAAAFHYAPEAIANTVRIAERCNLELDFKTYHFPQYIKP----AD 295

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIV 360
            K  ++ L  ++  GL+ RL            +    Y +RL  EL+ I +M F GYFLIV
Sbjct: 296  KTLDDVLEEQSYEGLKERLVTVRAKYPDITPEQEQGYYERLRIELDCIKQMGFPGYFLIV 355

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFI WAK + IPVGPGRGS AGS+ AY++ ITDIDP+ ++LLFERFLNP+R+SMPD D+
Sbjct: 356  ADFINWAKDHGIPVGPGRGSAAGSLVAYSIRITDIDPIPYNLLFERFLNPERISMPDIDV 415

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQDRR+EVI+YV  KYG ++V QIITFG++ A+  LRDVGRAL M Y  VD++ KL+P
Sbjct: 416  DFCQDRREEVIQYVTEKYGRDKVCQIITFGTMAARGVLRDVGRALDMAYGDVDKIAKLVP 475

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  +  +A+  + +  E   AD  V  LL+++  LEGL RHASTHAAG+V+    L 
Sbjct: 476  EVLGITLD-KALQQEPKLNELAAADRRVKELLDVALCLEGLARHASTHAAGVVVAPDVLE 534

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
            +  P+Y+D ++    TQ++MK++EK GL+KFDFLGLK LT++  ++  +   +    D++
Sbjct: 535  EFCPVYKDQKNGSITTQYSMKYVEKIGLVKFDFLGLKNLTVIHNAVKIIRAGKDPAFDIT 594

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            L+  DD E+Y LL +  T G+FQLESSGM+  L  ++P C EDIIA+ +LYRPGP+ + +
Sbjct: 595  LLRDDDEESYRLLQSGNTTGVFQLESSGMQGLLVKLKPSCFEDIIAVCALYRPGPLGSGM 654

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            V  + +RK+GK+K+V   P ++P+LK+T GVI+YQEQVMQI++ L+GYSL +AD+LRRAM
Sbjct: 655  VDDFIDRKHGKKKVVYDLPQLEPILKDTYGVIVYQEQVMQISRTLAGYSLGQADLLRRAM 714

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  E M K+K  F++GA + GI    A +IF+L+AKFA+YGFNKSH+AAYA+++YQTA
Sbjct: 715  GKKDPEVMAKEKIPFLAGAKEQGIDPKKAESIFDLMAKFAEYGFNKSHSAAYALVAYQTA 774

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYPVEF+AA +T +M N +K+ K   D R   I+++PP +N     F+V    I +
Sbjct: 775  YLKAHYPVEFMAALLTEDMGNTDKVIKNISDCRDMGIEVLPPDINASDHSFRVLGKSIRF 834

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L A+K VG +    I+E+     F  + DFC RVD +++N+RV+ESLV  GA D  G  
Sbjct: 835  GLGAVKNVGESAIEAIIESRKSGSFADIYDFCERVDLRRVNKRVVESLVKCGAFDSTGAR 894

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFEN 954
            R  L+ +L++     Q +++ R +   ++F   +   G  + K +L      +  +    
Sbjct: 895  RAPLMAALEDAMVLGQKIQQERDSAQVSLFGVAEIVRGNGNGKGSLPDVPEWDDKLLLNQ 954

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LGFY +GHPLD Y   +++       +         ++L  +VV+K++  T+KG R
Sbjct: 955  EKEALGFYITGHPLDRYSSQIKRFATVHTSDFGEISDRAEVKLCGIVVTKKEFITKKGER 1014

Query: 1015 IGWVTFSEPAKEYEANF 1031
            + +VT  +     E   
Sbjct: 1015 MAFVTLEDLHGSVEVVV 1031


>gi|222056375|ref|YP_002538737.1| DNA polymerase III, alpha subunit [Geobacter sp. FRC-32]
 gi|221565664|gb|ACM21636.1| DNA polymerase III, alpha subunit [Geobacter sp. FRC-32]
          Length = 1156

 Score = 1160 bits (3001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1037 (40%), Positives = 623/1037 (60%), Gaps = 19/1037 (1%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL +H+ YSLL+GA+ L +++ K+   + PA+AITD  N+F A+EF  K    G
Sbjct: 2    SQPDFVHLHLHTQYSLLDGAIRLGDLIKKVKGYEMPAVAITDHGNMFGAIEFYTKCKDKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG ++ I         +       +   +VLL    +GY+ L  LVS  Y  +   
Sbjct: 62   IKPIIGSEVYIAPGSRFSKESGNGHESTSSYHLVLLCQNLQGYRNLSWLVSAGY-KEGFY 120

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               RI    L E  +EGLI L+    G +      N  + A      + +LF  R Y+ L
Sbjct: 121  YKPRIDKEILAE-HSEGLIALSACLKGEVAYQCGRNRIEDAVATARWYSELFPGRYYIEL 179

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q +   ++     +++++A    LPLVATN+  +L+ ED +AH+VL+ +     ++  + 
Sbjct: 180  QENTLPEQDVANKRLLEVASELSLPLVATNDCHYLNREDAKAHEVLLCIQTGKTMNDPNH 239

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               + +  Y K+  EM + F   PEA+ NTV IA  C F L       P++I+       
Sbjct: 240  MHFSAEEFYFKSPQEMAAAFHYAPEAIANTVRIAESCDFELDFKTYHFPQYIKP----AD 295

Query: 305  KEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            K  ++ L  +A  GL+ RL    A+         + Y  RL  EL+ I +M F GYFLIV
Sbjct: 296  KSLDDVLEEQAYEGLKDRLVAVRAKYPDLTADQEKGYYDRLRIELDCIKQMGFPGYFLIV 355

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFI WAK + IPVGPGRGS AGS+ AY++ ITD+DP+ ++LLFERFLNP+R+SMPD D+
Sbjct: 356  ADFINWAKDHGIPVGPGRGSAAGSLVAYSIRITDLDPIPYNLLFERFLNPERISMPDIDV 415

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQDRR+EVI+YV  KYG ++V QIITFG++ A+  LRDVGRAL M Y  VDR+ KL+P
Sbjct: 416  DFCQDRREEVIQYVTEKYGRDKVCQIITFGTMAARGVLRDVGRALDMSYGDVDRIAKLVP 475

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  +  +A+  + +  E   ADP +  LL+++  LEGL RHASTHAAG+V+    L 
Sbjct: 476  EVLGITLE-KALQQEPKLNELAEADPRIKELLDVALCLEGLARHASTHAAGVVVAPDVLE 534

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
               P+Y+D ++    TQ++MK++EK GL+KFDFLGLK LT++  ++  +   +    D++
Sbjct: 535  AFCPVYKDQKNGSITTQYSMKYVEKIGLVKFDFLGLKNLTVIHNAVKLIRAGKNADFDIT 594

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            ++  DD ETY LL +  T G+FQLESSGM+  L  ++P C EDIIA+ +LYRPGP+ + +
Sbjct: 595  VLRDDDEETYKLLQSGNTTGVFQLESSGMQGLLVKLKPSCFEDIIAVCALYRPGPLGSGM 654

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            V  + +RK+G++K+V   P ++P+LK+T GVI+YQEQVMQI+++L+GYSL +AD+LRRAM
Sbjct: 655  VDDFIDRKHGRKKVVYDLPQLEPILKDTYGVIVYQEQVMQISRVLAGYSLGQADLLRRAM 714

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  E M K+K  F++GA K  I    A  IF+L+AKFA+YGFNKSH+AAYA+++YQTA
Sbjct: 715  GKKDPEVMAKEKIPFLAGAEKQNIDPKKAEAIFDLMAKFAEYGFNKSHSAAYALVAYQTA 774

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++KTHYPVEF+AA +T +M + +K+ K   D R   I+++PP +N   + F+V  N I +
Sbjct: 775  YLKTHYPVEFMAALLTEDMGSTDKVIKNISDCRDMGIEVLPPDINASDLSFRVLGNSIRF 834

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L A+K VG +    I+EA     F  + DF  RVD +K+N+RV+ESL+  GA D  G  
Sbjct: 835  GLGAVKNVGESAIEAILEARKTGSFADIFDFGERVDQRKVNKRVVESLIKCGAFDSTGAK 894

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFEN 954
            R  L+  L++     Q +++ R +   ++F  E+   G  + K +L      +       
Sbjct: 895  RAPLMAGLEDAMSLGQKIQQERESAQVSLFGVEEMTRGNGNGKGSLPDLPEWDDKFLLNQ 954

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LGFY +GHPLD Y   +R+       +         +++  +VV+K++  T+KG R
Sbjct: 955  EKEALGFYITGHPLDRYSAQIRRFASVHTSDFAEIKDKAEVKICGIVVAKKEFITKKGDR 1014

Query: 1015 IGWVTFSEPAKEYEANF 1031
            + +VT  +     E   
Sbjct: 1015 MAFVTLEDLHGTVEVVV 1031


>gi|118580484|ref|YP_901734.1| DNA polymerase III, alpha subunit [Pelobacter propionicus DSM 2379]
 gi|118503194|gb|ABK99676.1| DNA polymerase III, alpha subunit [Pelobacter propionicus DSM 2379]
          Length = 1184

 Score = 1156 bits (2991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 433/1044 (41%), Positives = 630/1044 (60%), Gaps = 22/1044 (2%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            +Q+  ++P FVHL VH+ YSLL+GA+ L +++ K  A   PA+AITD  N+F A+EF  K
Sbjct: 7    SQHPPQAP-FVHLHVHTQYSLLDGAIRLEDLIAKAKAHNMPALAITDHGNMFGAVEFYLK 65

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
               AGI+P+IGC++ I         +           ++LL    +GY+ L  L S  Y 
Sbjct: 66   CKKAGIKPLIGCEVYIAPDSRFSRESTRGISEAAY-HLILLCENMQGYRNLSYLTSAGY- 123

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             +      RI    LQE  +EGLI L+    G +    F +    A +    + +LF DR
Sbjct: 124  KEGFYYRPRIDRELLQE-HSEGLIALSACLKGEVAMQCFRDRMDDALETARWYSQLFPDR 182

Query: 182  LYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ LQ +   ++     +++++A T +LPLVATN+  +L+ ED  AH+VL+ +     +
Sbjct: 183  YYIELQENTLPEQDVVNKRLMEVAATLQLPLVATNDCHYLNREDARAHEVLLCIQTGKTM 242

Query: 241  SQKDRPRVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQV--HAPILPRFIE 297
            S     + + + +  K+  EMV+ F   PEA+ NT++IA RC   L +       P F  
Sbjct: 243  SDPSHMKFSAEEFYVKSPEEMVAAFGYAPEAVSNTLKIADRCDLKLPLDTGEYHFPHFDP 302

Query: 298  KECDDIQKEEENELRNKAVAGLEVR----LAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
                   K  ++ L   AV GL+ R    LA+         Q Y +RL  EL  I  M+F
Sbjct: 303  PAG----KNHDDMLEELAVQGLKERMVTILAKYPDMSLERRQAYFERLQIELKCIREMQF 358

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFLIV+DFI WAK   IPVGPGRGS AGS+ AYA+ ITD+DPL ++LLFERFLNP+R+
Sbjct: 359  PAYFLIVSDFITWAKNKGIPVGPGRGSAAGSLVAYAIRITDLDPLPYNLLFERFLNPERI 418

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            +MPD D+DFCQDRR+EVI+YV  KYG ERV QIITFG+++AKA +RDVGRAL M Y  VD
Sbjct: 419  TMPDIDVDFCQDRREEVIQYVIEKYGRERVCQIITFGTMKAKAVVRDVGRALNMTYGDVD 478

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            R+ KLIP+D    +  +A+  + +  E    DP V  LL+ +  LEGL RHASTHAAG+V
Sbjct: 479  RIAKLIPDDLKMTL-AKALKQEPQLNEMAERDPQVRDLLDTALCLEGLTRHASTHAAGVV 537

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
            +  R L + +P+Y+D ++    TQ++MK++E  GL+KFDFLGLK LT+++ ++  +   +
Sbjct: 538  VAPRQLEEFLPVYKDQKTGSINTQYSMKYVEMVGLVKFDFLGLKNLTVIENAVHLVRAGK 597

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                D++ +  DD E+Y L+++  T GIFQLESSGM++ L  ++P C ED+IA  +LYRP
Sbjct: 598  DPDFDITRLRDDDSESYDLISSGNTTGIFQLESSGMKEMLVKLKPSCFEDVIAACALYRP 657

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+   +V  +  RK+G++K+V   P ++P+LK+T GVI+YQEQVMQI++ L+GYSL  A
Sbjct: 658  GPLGCGMVDEFIERKHGRQKVVYDLPQLEPILKDTYGVIVYQEQVMQISRTLAGYSLGRA 717

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK    M K+KE F+ GA   GI    A  IF+ +AKFA+YGFNKSH+AAYA
Sbjct: 718  DLLRRAMGKKDPAVMAKEKEPFLEGAKAQGIDPKKAEAIFDQMAKFAEYGFNKSHSAAYA 777

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +I+YQTAW+K+HYPVEFLAA +T +MD+ +K+ K   D R+  I+++PP VN   + F V
Sbjct: 778  LIAYQTAWLKSHYPVEFLAALLTCDMDSTDKVIKNINDCREQGIEVLPPDVNKSGLTFTV 837

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
              N + + L A+KGVGT     I+EA  D PF  + DFC RVD ++ N++VLE+L+  GA
Sbjct: 838  VGNSMRFGLGAVKGVGTGAVEAILEARQDGPFKDVYDFCERVDMRRSNKKVLEALIKCGA 897

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENS 948
             D     R  +++ L+    + Q +++ R +   ++F  ++   S      L      + 
Sbjct: 898  FDSTNAPRAAMMEGLETAMNFGQRIQQERASAQVSLFGDDEVARSGGNGHRLPDVPEWHD 957

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              +   E+  LGF  +GHPLD Y   ++++             G  IR+  +V S ++  
Sbjct: 958  KEKLALEKEALGFLITGHPLDRYVDDIKRLNCVEISRLTEQADGGEIRVCGIVSSLKEIT 1017

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T+KG R+G+VT  +     E   F
Sbjct: 1018 TKKGDRMGFVTIEDLTGSVEVTVF 1041


>gi|188585188|ref|YP_001916733.1| DNA polymerase III catalytic subunit, DnaE type [Natranaerobius
            thermophilus JW/NM-WN-LF]
 gi|179349875|gb|ACB84145.1| DNA polymerase III catalytic subunit, DnaE type [Natranaerobius
            thermophilus JW/NM-WN-LF]
          Length = 1134

 Score = 1155 bits (2989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1033 (39%), Positives = 611/1033 (59%), Gaps = 26/1033 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
               FVHL  HS YSLL+G   +N ++ K    Q PA+A+TD   ++ A+EF ++A  AGI
Sbjct: 2    PKPFVHLHTHSQYSLLDGKCRINELVQKAKEYQMPALALTDHGVMYGAVEFYKQAKEAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+GC++ +  +     T +          +VLL     GY+ L++LVS  +  +    
Sbjct: 62   KPILGCEVYVAPRGR---TVKDPVKDKHQYHLVLLAENQTGYKNLMKLVSLAF-KEGFYY 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
              R+    L+     G+I L+   +G I         +VA+ R    K +F  +  Y+ L
Sbjct: 118  KPRVDYELLERYHD-GIIALSACLAGEIPTLILQGQYEVAKNRADRLKSIFGQNNFYLEL 176

Query: 187  QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    ++   + ++Q++   ++ LVATN+  +L+ ++   HDVL+ +     +  +DR
Sbjct: 177  QDHGLTEEQQVNTHLLQISRELDIGLVATNDIHYLTNQESSIHDVLLCIQTGKHLDDQDR 236

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             +  + + Y K+  EM +IF D P A+ENT+ IA RC   L      LP F   E  D  
Sbjct: 237  MKFPSNEFYFKDGDEMSNIFKDFPGAIENTLAIADRCQVELDFDTLHLPEFRVPEGYD-- 294

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              E + LR     GL  R  Q            ++RL++EL+VI++M ++ YFLIV DF+
Sbjct: 295  --ENSYLRKLCQKGLLERYEQVTTK-------IQERLEYELDVISKMGYASYFLIVWDFV 345

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A +NNI VGPGRGS AGS+ AY+L IT++DP+R+ LLFERFLNP+R++MPD DIDFC 
Sbjct: 346  RFAHENNILVGPGRGSAAGSLVAYSLRITNVDPIRYGLLFERFLNPERVNMPDIDIDFCY 405

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + R+ VI+YV  KYG++ VA IITFG++QA+AA+RDVGR + M Y  VDR+ K+IP+DP 
Sbjct: 406  ENRERVIQYVVEKYGNDNVAHIITFGTMQARAAVRDVGRVMGMNYGDVDRVAKMIPHDPG 465

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  +  F++    DP V  L+ IS+ +EGL RHAS HAAGIVI   PL++ VP
Sbjct: 466  MTID-KALELNKDFKKLYDEDPQVRELINISKSIEGLPRHASIHAAGIVISKAPLTEYVP 524

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +      D  VTQF M  +E+ GL+K DFLGLKTLT++ ++++ + Q     VDL+ IP 
Sbjct: 525  LQC--NDDQVVTQFPMGTLEELGLLKMDFLGLKTLTMMNRAVEIVNQTQAETVDLNKIPL 582

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +T+ L+    TLG+FQLESSGMR  L  ++P   EDIIA  +LYRPGP++ I  +  
Sbjct: 583  DDEQTFRLIREGNTLGVFQLESSGMRGVLRDLKPTSFEDIIATSALYRPGPMEQIPTFIE 642

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             K+G+ +I   H  + P+L+ET G+I+YQEQ+MQ+A  ++G+SL EAD+LRRA+GKK K 
Sbjct: 643  SKHGQREISYPHEDLKPILEETYGIIVYQEQIMQVASTMAGFSLGEADLLRRAIGKKKKN 702

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             + +QKE+F+ G    G  K    ++++L+ KFADYGFNKSH+AAYA I+YQ+A++K +Y
Sbjct: 703  ILAEQKEKFVQGCINRGYGKETGEHVYDLIVKFADYGFNKSHSAAYAYIAYQSAYLKANY 762

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAI 842
            P +F+AA +T  M++ +K+  +  +AR+  I+I+PP VN   VDF  V D RI + LAA+
Sbjct: 763  PTQFMAALLTNSMNDTDKLALYIDNAREMGIEILPPDVNESLVDFTAVSDFRIRFGLAAV 822

Query: 843  KGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K VG      I+     +  F SL+DFCSR D +  N++ +ESL+  GA D F ++R Q+
Sbjct: 823  KNVGRGAVEEIITRRRKEGGFTSLDDFCSRTDLRACNKKAIESLIKVGAFDAFEHNRKQM 882

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LQ LD   K AQ            +F     GT    +          +   + E+ +LG
Sbjct: 883  LQVLDEAVKKAQAFTSGSVKGQVTMFEIVSDGTNKIDLDYPDVEEFTLNELLQMEKELLG 942

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            F+ SGHPLD YK  L  +      E      G  I++A +    ++  T+KG ++ + T 
Sbjct: 943  FFVSGHPLDNYKEKLANIDTSSLAELNQIKEGFRIKVAGICQDVKEIITKKGEQMAFCTL 1002

Query: 1021 SEPAKEYEANFFP 1033
             + +   E   FP
Sbjct: 1003 EDQSGTVELVIFP 1015


>gi|154248204|ref|YP_001419162.1| DNA polymerase III subunit alpha [Xanthobacter autotrophicus Py2]
 gi|154162289|gb|ABS69505.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2]
          Length = 1150

 Score = 1154 bits (2986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 542/1029 (52%), Positives = 727/1029 (70%), Gaps = 11/1029 (1%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL VHSSYSLLEGALS+  + D + AD QPAIA+TDT NLF ALEFS+K   AGIQ
Sbjct: 4    PGFIHLHVHSSYSLLEGALSIGKLADLVKADAQPAIALTDTGNLFGALEFSEKMSGAGIQ 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L +D+ +        +   P  P IVLL  +  G++ L+ LVSR +L    +  
Sbjct: 64   PIAGVSLALDLPEPAGPRGAIR---PKRPRIVLLAQSEPGWRNLMRLVSRSFLETASEDE 120

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI   WL +    GLI LTGG +GPID+A      ++A +RL     LFGDRLYV +QR
Sbjct: 121  PRILPDWLADAHD-GLIALTGGPAGPIDKALVSGHPELAAERLDLLASLFGDRLYVEVQR 179

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +R  E+ +++LAY   LPLVA+N   F S+ DYEAHD L+ +A   ++S+ DR R
Sbjct: 180  HDTDAERLAEAGLLELAYAKGLPLVASNEPFFASKTDYEAHDGLLCIAEGRLLSEGDRRR 239

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD-DIQKE 306
            +TP+H  K R+EM+++F+DLPEA  NTVEIARRC++ ++   PILPRF     D D   E
Sbjct: 240  LTPEHRFKTRAEMLALFADLPEATANTVEIARRCAYRVRTVKPILPRFTSGGGDGDPLAE 299

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E  EL  +A  GL  RL +   A G     Y +RL +EL+VI +MKF GYFLIV+DFI+W
Sbjct: 300  EAAELERQAKEGLAQRLEKHGPAPGLDIATYEERLAYELSVITKMKFPGYFLIVSDFIKW 359

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK ++IPVGPGRGSGAGS+ AY+L ITD+DP+RF LLFERFLNPDR+SMPDFD+DFCQ+R
Sbjct: 360  AKAHDIPVGPGRGSGAGSLVAYSLQITDLDPIRFGLLFERFLNPDRVSMPDFDVDFCQER 419

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YVQ +YG  +VAQIITFG+LQA+  LRDVGR L+MPY QVD+LCKL+P +PA+P
Sbjct: 420  RDEVIHYVQERYGRAQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLCKLVPQNPANP 479

Query: 487  VSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+L+ AI D+ R + +R  +  V R  +I+ +LEGL RHASTHAAGIVIGDR L +LVP+
Sbjct: 480  VTLKQAIEDEPRLQASRDQEEVVKRAFDIAVRLEGLNRHASTHAAGIVIGDRKLHELVPL 539

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD +SD+PVTQ+NMKW+E+AGL+KFDFLGLKTLT + K++  + QRG+ +D+S IP DD
Sbjct: 540  YRDPKSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTTIDKAVKLIHQRGIDLDISKIPLDD 599

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +TY +L    T+G+FQ+ES+GMR+AL  M+ D +ED+IALV+LYRPGP+ NI VY + K
Sbjct: 600  PKTYAMLGKGETVGVFQVESAGMRRALVDMKADRVEDLIALVALYRPGPMANIPVYCDCK 659

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+ K   +HP+++P LKET GVIIYQEQVMQIAQ ++GYSL EAD+LRRAMGKKI+ EM
Sbjct: 660  HGRAKPDYLHPMLEPYLKETFGVIIYQEQVMQIAQAMAGYSLGEADLLRRAMGKKIRAEM 719

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +KQ+ERF+SG++  GI K  A  IF+LLAKFADYGFNKSHAAAYA+++YQTAW+K +YP 
Sbjct: 720  EKQRERFVSGSAGRGIEKAQADTIFDLLAKFADYGFNKSHAAAYAIVAYQTAWLKANYPT 779

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EFLAASMTL+M N +K+ +F Q+A++  I+++PP++N    +F V D +I Y++ AIKGV
Sbjct: 780  EFLAASMTLDMGNTDKLAEFRQEAQRLGIEVVPPNINLSAREFAVKDGKIIYAMCAIKGV 839

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G      ++ A  D+PF S  DF SR+  K +N+R LESL+ AG  D    +R +   ++
Sbjct: 840  GGAAVDALVAARGDRPFRSFADFASRLPVKLVNKRTLESLMAAGCFDVLEKNRARAFAAI 899

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            ++I   AQ VE N  +   ++F    G  +  + + + +    S R + E   +GF+ +G
Sbjct: 900  ESIVAEAQRVEANAQSGQNDMFG--SGPSAVSLPIPEVAPWLPSERLQKEYDAIGFFLTG 957

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            HPLD Y   L+KM ++ + +    +R      RLAA VVSKQ+++T+ G+R+G V  S+P
Sbjct: 958  HPLDDYADALKKMRVQSFSDFSRAVRSGAAAGRLAATVVSKQERRTKSGTRMGIVGLSDP 1017

Query: 1024 AKEYEANFF 1032
            +  YEA  F
Sbjct: 1018 SGHYEAVIF 1026


>gi|258593588|emb|CBE69929.1| DNA polymerase III, alpha subunit [NC10 bacterium 'Dutch sediment']
          Length = 1146

 Score = 1153 bits (2984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 433/1033 (41%), Positives = 622/1033 (60%), Gaps = 24/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YSLL+GA SL  ++ K    + PA+A+TD  NLF A++F   A   GI+P
Sbjct: 5    DFVHLHVHTQYSLLDGACSLETLVAKAKEYKMPALAMTDHGNLFGAIDFYTLAMKEGIKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ I      + +NQ  + +     I LL     GY+ L++LVS  YL        
Sbjct: 65   IIGSEVYIAPGSRFEKSNQD-SGYEGASHITLLAKDQVGYRNLMKLVSAGYLEG-FYYKP 122

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQR 188
            RI      +   +GLI L+G  +    +A        A++ +  +   L  +  ++ +Q 
Sbjct: 123  RIDRELFAQ-HCQGLIALSGCLNSEAAKALLDGDEARAKETVGWYMDALGRENYFLEVQN 181

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++   +  V++LA   +LP+VATN+  + S+ED  AH+VL+ +     +  KDR R
Sbjct: 182  HGIAEQKTVTDGVLRLAKAFDLPIVATNDLHYPSKEDARAHEVLLCIQTGKTIQDKDRWR 241

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + D  Y K+ +EM  IF++LPEA+ NT+ +A RC+  LQ     LPR+   E     + 
Sbjct: 242  FSTDQFYFKSAAEMKQIFAELPEAVRNTITVAERCNLQLQFGQLRLPRYQVPEG----QT 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+ L + A  GL++R     +       +   RL +EL+VI +  FSGYFL+V DFI++
Sbjct: 298  LESYLAHLAWEGLKIRYPDANV-------EVEARLKYELDVIQKTGFSGYFLVVWDFIKF 350

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   I VGPGRGS A S+ AY L IT+IDPLR+ L+FERFLNP+R+SMPD DIDF  DR
Sbjct: 351  AKDRGISVGPGRGSAAASLVAYCLNITNIDPLRYGLIFERFLNPERISMPDMDIDFSDDR 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV  KYG + VAQIITFG++ AKA +RDVGR L MPY++VD++ KL+PN     
Sbjct: 411  RDEVIEYVTRKYGADNVAQIITFGTMGAKAVIRDVGRGLGMPYAEVDKIAKLVPNRINIS 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +AIA+     EA      V  L ++++ LEGL RHASTHAAG+VI   PL++ VP+Y
Sbjct: 471  LD-EAIAESPPLTEAVQNRTEVGELWQVAKCLEGLTRHASTHAAGVVISGDPLTEHVPLY 529

Query: 547  RDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
            +D ++   P TQ+ MK IEK GL+K DFLGL+TLT++  +L+ +A  RG K+ +  IP D
Sbjct: 530  KDPKAGSKPTTQYAMKAIEKIGLLKVDFLGLRTLTVIANTLELIASGRGDKITIEKIPLD 589

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D   + LL+   T G+FQLESSGMR  +  ++P+ +ED+IALV+LYRPGP+  I  + NR
Sbjct: 590  DPAVFSLLSEARTFGVFQLESSGMRDLMRRLKPERLEDVIALVALYRPGPMVMIDDFINR 649

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            KNGK KI   HPL++ +LKET G+++YQEQVM+IA  L+G+S+ EADVLR+AMGKK  E 
Sbjct: 650  KNGKVKIRYDHPLMETILKETYGIMVYQEQVMRIASDLAGFSMGEADVLRKAMGKKDPEM 709

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MD+Q+++F+ GA   G+    A  IF+ +A FA Y FNK HA +YA+++YQTA++K HYP
Sbjct: 710  MDQQRKKFVDGAKVKGVQARTAEKIFDKMAPFAGYAFNKPHATSYALLAYQTAYLKAHYP 769

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEF+AA +T EM + + I K+  + +Q  I ++PP VN     F V   +I + L AIK 
Sbjct: 770  VEFMAALLTSEMADTDGIVKYIDECKQMGITVLPPDVNESESRFTVVGEQIRFGLVAIKN 829

Query: 845  VGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG T  + I+    D  PF SL DFC RVD +  N+RV+ESL+  GA D  G +R QL+ 
Sbjct: 830  VGETAIQSILATRRDKGPFRSLFDFCERVDLRLTNKRVIESLIKCGAFDSLGAARAQLIA 889

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
              D   +     ++ R++   ++        G       L      + + R   E+  LG
Sbjct: 890  VADKAMEAGAGTQRERSHGQGSLLDVLEATGGLSQQAEALPAIPEWSPTQRLAAEKETLG 949

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY +GHPL  Y+ ++ K+G    +   A      + L A+V + ++  T+ G R+ +VTF
Sbjct: 950  FYVTGHPLADYRDVIAKVGAVTTDRLAACQDKETVTLCAIVSAVKEITTKSGDRMAFVTF 1009

Query: 1021 SEPAKEYEANFFP 1033
             + A   EA  FP
Sbjct: 1010 EDMAGTVEAVAFP 1022


>gi|121534258|ref|ZP_01666082.1| DNA polymerase III, alpha subunit [Thermosinus carboxydivorans Nor1]
 gi|121307028|gb|EAX47946.1| DNA polymerase III, alpha subunit [Thermosinus carboxydivorans Nor1]
          Length = 1129

 Score = 1153 bits (2984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1031 (39%), Positives = 611/1031 (59%), Gaps = 27/1031 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+GA  + +++ +      PA+AITD  N++  ++F ++A AAGI+P
Sbjct: 2    SFVHLHVHTEYSLLDGASRIKHLVCRAKELGMPALAITDHGNMYGVIDFYKQARAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +   + T      +     +VLL  T +GY+ LIELVSR           
Sbjct: 62   IIGCEVYVAPRSRWEKTAVEGEAY---YHLVLLAETDQGYRNLIELVSRANSEG-FYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
            R+    L+   + GLI L+G  +G I         + AE     ++ +FG R  ++ LQ 
Sbjct: 118  RVDKELLRTY-STGLICLSGCIAGEIPALLLKGDFEGAEALAHEYRDIFGPRNFFLELQD 176

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++    +Q+  LA    L LVATN+  ++ + D E HDVL+ +     V    R R
Sbjct: 177  HNLPEQKQVNAQLALLADKLGLGLVATNDIHYVDKGDAECHDVLLCIQTGKTVDDSGRMR 236

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + YLK+ +EM ++F   P+A+ NT+ IA RC   ++     LP F           
Sbjct: 237  FPNNEFYLKSPAEMAALFGWRPDAITNTLVIAERCQVSIEFGKLHLPEFPVPAG----LT 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  LR      L  R   G            +RL++EL VI +M +S YFLIV DF+ +
Sbjct: 293  ADEYLRRLCFERLPRRYPTGTAQAT-------ERLEYELAVIQKMGYSSYFLIVWDFVNF 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +IPVGPGRGS AGS+ +Y L IT+IDPL++ LLFERFLNP+R++MPD DIDFC +R
Sbjct: 346  ARSRDIPVGPGRGSAAGSIVSYLLGITNIDPLKYGLLFERFLNPERVTMPDIDIDFCYER 405

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R ++I YV  +YG + VAQIITFG++ A+AA+RDVGRAL +PY +VDR+ KLIP +    
Sbjct: 406  RGQIIDYVAKRYGADHVAQIITFGTMAARAAVRDVGRALNLPYGEVDRIAKLIPTELGTT 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+   +  RE    D  V +LL+++  +EGL RHASTHAAG+VI    L+Q VP+ 
Sbjct: 466  LQ-RALEVSTELRELYETDDKVRKLLDLAMAVEGLPRHASTHAAGLVIAKEKLTQYVPLQ 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                     TQ++   +E+ GL+K D LGL+TLT++  +L+ + + RG+++D+  IP DD
Sbjct: 525  NST-EGFVTTQYDKDRVEEIGLLKMDLLGLRTLTVIGDTLELVRKSRGIRLDIDAIPLDD 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
             +T  LL    TLG+FQ+ES+GM   ++ ++P+  +D+I LV+LYRPGP+ + +V  +  
Sbjct: 584  AKTCQLLANGETLGVFQMESAGMTNLVKELKPERFDDLIPLVALYRPGPLGSGMVADFIA 643

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             ++GK+++   HPL++P+LKET GVI+YQEQVMQIA +++G++L +AD+LRRAMGKK  E
Sbjct: 644  GRHGKKEVQYPHPLLEPILKETFGVILYQEQVMQIASVMAGFTLGQADLLRRAMGKKKHE 703

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++ Q++ F+ GA++ GI    A NIFEL+A FADYGFNKSH+AAYA+++YQTA++K HY
Sbjct: 704  VLEAQRDNFMRGAAERGIDSATAANIFELMAHFADYGFNKSHSAAYALVAYQTAYLKAHY 763

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P EF+AA +T  M   EK+  + ++ R+  I ++PP +N    +F V    I + LA +K
Sbjct: 764  PQEFMAALLTSVMGANEKVGLYIEECRRLGIPVLPPDINASRENFTVDGQAIRFGLAGVK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG     +I+ A  +   F SL DFC+RVD + +N+RV+ESL+  GA D  G+ R QLL
Sbjct: 824  NVGDAAIANIIAARDSGGKFTSLVDFCTRVDMRTVNKRVIESLIKCGAFDSLGWRRSQLL 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              LD   + A   +++  +    +F+ E    +D I                E+ + GFY
Sbjct: 884  AILDQAVEAAASRQRDLASGQMGLFSDETVNSADDIVPPPLEELPKEQLLAMEKEMTGFY 943

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             +GHPLD Y+  L        +E +    G  + +A ++   ++  T+ G  + + T  +
Sbjct: 944  VTGHPLDKYRDQLNNY--TKIDELMQYADGQTVCIAGLIAGAKRITTKGGEMMCFATLED 1001

Query: 1023 PAKEYEANFFP 1033
               + E   FP
Sbjct: 1002 FTNQVEVVIFP 1012


>gi|169831212|ref|YP_001717194.1| DNA polymerase III, alpha subunit [Candidatus Desulforudis
            audaxviator MP104C]
 gi|169638056|gb|ACA59562.1| DNA polymerase III, alpha subunit [Candidatus Desulforudis
            audaxviator MP104C]
          Length = 1075

 Score = 1149 bits (2972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1037 (39%), Positives = 600/1037 (57%), Gaps = 31/1037 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YSLL+GA  + +++ + A    PA+AITD   +F  +EF +    AG++P
Sbjct: 3    DFVHLHTHTEYSLLDGAARIKDLVRRAAEFGMPALAITDHGTMFGVVEFYKACRNAGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ +  +      ++       +  +VLL     GY+ L+ LVS  +         
Sbjct: 63   VIGCEVYVAPRTRH---DRQSGIDDKLAHLVLLAENERGYRNLLRLVSLSFTEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L     EGLI L+   +G I           A +    ++ LFG   Y+ LQ H
Sbjct: 119  RIDREILA-THREGLIALSACLAGEIPELILAGKPDRALETAAEYRDLFGKNFYLELQDH 177

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +      +V +     + LVATN+  ++  E  E  D+L+ +     V    R R 
Sbjct: 178  GLPGQSVVNRGLVDIGKRLGIELVATNDVHYVEREQAENQDILLCIQTGKTVHDAGRLRF 237

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  Y K+  EM  +F++LP AL NT  IA RC+  L      LP +      D     
Sbjct: 238  EGDQFYFKSGGEMARLFAELPAALANTRLIAERCNLTLDFETLHLPEYRVPPNYDA---- 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L      GL  R           + D R+RLD+EL VIA MK+S YFLIV DFI++A
Sbjct: 294  DTYLAELCHQGLARRY-------SPVSDDIRRRLDYELRVIAEMKYSSYFLIVWDFIRFA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I VGPGRGS AGS+ AY+L IT+IDPL + LLFERFLNP+R+S+PD D DFC +RR
Sbjct: 347  REKGILVGPGRGSAAGSLVAYSLGITNIDPLAYGLLFERFLNPERISLPDIDSDFCFERR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + VAQIITFG++ A+AA+RDVGRAL +PY++VDR+ KLIP +P   +
Sbjct: 407  GEVIDYVFEKYGRDCVAQIITFGTMAARAAVRDVGRALGLPYAEVDRIAKLIPGEPGMSI 466

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+       E    D +V ++LE ++ LEG+ RHAS HAAG+VI    L+  VP+YR
Sbjct: 467  E-KALERSPELAELYERDENVRKVLEAARALEGMPRHASIHAAGVVIAKEKLTNYVPLYR 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                 +  TQF+M+ IE+ GL+K D LGL+TLT++  +++ +   RG K+++  IP DD 
Sbjct: 526  -TSDGVVATQFSMEAIEELGLLKMDLLGLRTLTVIGDTVELIRRHRGQKLEMETIPLDDP 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
             TY LL    T G+FQLESSGMR  L  ++P+  ED+IALV+LYRPGP+ + +V  +  R
Sbjct: 585  ATYDLLGRGDTAGVFQLESSGMRSILRELRPEVFEDVIALVALYRPGPLGSRMVEDFIKR 644

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK ++  +HP + P+LK+T GVI+YQEQVM+IA  L+G+SL EAD+LRRAMGKK  E 
Sbjct: 645  KHGKTEVQYLHPKLRPILKDTYGVILYQEQVMRIASDLAGFSLGEADLLRRAMGKKKPEI 704

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +   +++F+ GA+ +G+   +A  IF+L+A FA YGFNKSH+AAYA+I+YQTA++K +YP
Sbjct: 705  IAGLRDQFLEGATAHGVDPAVAGQIFDLMAYFAGYGFNKSHSAAYALIAYQTAYLKANYP 764

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +E++AA +T   D+ EK+  + ++ R+  I+++PP VN    DF V  ++I + LA ++ 
Sbjct: 765  IEYMAALLTSVRDSPEKVSSYVEECRRLGIEVLPPDVNESRKDFTVVGDKIRFGLAGVRN 824

Query: 845  VGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG      ++E    + PF SL DFCSR+D K +N+R++ESL+ AGA    G+ R QLL 
Sbjct: 825  VGEAAVNAVIETRERNGPFRSLPDFCSRLDGKVVNKRMVESLIRAGAFSSLGFRRTQLLA 884

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAH-------EKGTFSDKITLEKFSVENSSVRFENEQ 956
             +D    ++Q ++K + +   ++F              + +I +   +          E+
Sbjct: 885  VMDEALSFSQRLQKEKESGQLSLFGDWGDFGGEGTAAAAPEIVVPHLAEFERHEILAMEK 944

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             +LG Y SGHPL  +K  LR++      E      G  + L  +VV  +   TRKG  + 
Sbjct: 945  EMLGLYLSGHPLQEFKDTLRRLTTVNAVEIPELNPGQQVILGGLVVGLKTITTRKGEPMC 1004

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++   +     E   FP
Sbjct: 1005 FLNLEDLTSRAEIVIFP 1021


>gi|13471011|ref|NP_102580.1| DNA polymerase III subunit alpha [Mesorhizobium loti MAFF303099]
 gi|14021755|dbj|BAB48366.1| DNA polymerase III alpha subunit [Mesorhizobium loti MAFF303099]
          Length = 1175

 Score = 1148 bits (2970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 596/1030 (57%), Positives = 757/1030 (73%), Gaps = 8/1030 (0%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VHS+YSLLEGAL L  I+     D+ PAIA+TDTNNLF ALEF+QKA   GIQP
Sbjct: 28   PFVHLRVHSAYSLLEGALQLGKIVGHAVKDEAPAIAVTDTNNLFGALEFAQKAVKDGIQP 87

Query: 70   IIGCQLDIDM-QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIGCQ+ +    +N       +   P +  +VLL +T  GY  L+ LVSR+YL     ++
Sbjct: 88   IIGCQIALAFSGENSDGQRDRRRQGPEMRPVVLLAATEAGYSNLVRLVSRVYLETPPGEA 147

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            V +    L E   +GLI L+GG  GPI  A   +   +AE RLLT K LFGDRLYV L R
Sbjct: 148  VHLTTEML-EGKADGLICLSGGPRGPIGNALKEDRRDLAEVRLLTLKTLFGDRLYVELDR 206

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              GYDR  E Q + LAY HELPLVATN + F S +DYEAHD L+A+A  +VV+   R R+
Sbjct: 207  VAGYDRVIEHQTIDLAYAHELPLVATNEAFFSSRDDYEAHDALIAIAEGSVVAVDTRRRL 266

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +PD++L++++EM  +F+DLPEA++NTVEIA RCS+  +  +PILPRF   +  D    E+
Sbjct: 267  SPDNFLRSQAEMAQLFADLPEAIDNTVEIALRCSYYPKTRSPILPRFTGGDASDKDAAEK 326

Query: 309  NE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E   L  +A  GL+ RLA      GY  + YR+RL+FEL +I +MKF GYFLIVADFI+
Sbjct: 327  AEAAELARQAREGLDARLALHGPTPGYTVEQYRERLEFELGIIEKMKFPGYFLIVADFIK 386

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK   IPVGPGRGSGAGS+ AY+ TITDIDPLRFSLLFERFLNPDR+SMPDFDIDFCQD
Sbjct: 387  WAKAQGIPVGPGRGSGAGSLVAYSTTITDIDPLRFSLLFERFLNPDRVSMPDFDIDFCQD 446

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVIRYVQ KYG ++V QIITFG+LQA+A LRDVGR LQMPY QVD+L K++P +PA+
Sbjct: 447  RREEVIRYVQQKYGRDQVGQIITFGTLQARAVLRDVGRVLQMPYGQVDKLSKMVPQNPAN 506

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            PV L  AIA++ RF E    +P V  LL+++QKLEGLYRHASTHAAGIVIGDRPLS+LVP
Sbjct: 507  PVKLADAIANEPRFAEEAEKEPIVQTLLDMAQKLEGLYRHASTHAAGIVIGDRPLSELVP 566

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++  + +RG+ +DL+ IP D
Sbjct: 567  MYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLETAVKLIRRRGIDIDLATIPLD 626

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D ETY +L+    +G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN R
Sbjct: 627  DPETYAMLSRGEVVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPTYNAR 686

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+E++ SIHP ID ++KETQGVI+YQEQVMQIAQ LSGYSL EAD+LRRAMGKKI+ E
Sbjct: 687  KHGEEEMASIHPKIDHLVKETQGVIVYQEQVMQIAQELSGYSLGEADLLRRAMGKKIRAE 746

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MDKQ+ERF+SGA + G+SK  A  IF+LLAKFADYGFNKSHAAAYAV+SYQTA++K HYP
Sbjct: 747  MDKQRERFVSGAVERGVSKPQADFIFDLLAKFADYGFNKSHAAAYAVVSYQTAYLKAHYP 806

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMTL+M N +K+  F QDA +  I+++ PSV T    F+VG+NRIYYS+AA+KG
Sbjct: 807  VEFLAASMTLDMGNTDKLADFRQDALRLGIEVLAPSVMTSFRPFEVGENRIYYSMAALKG 866

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG     HI+    +KPF +L DFC RVD K + +RV ESL+ AGALDCFG+ R Q++  
Sbjct: 867  VGDAAVEHIVAVRGEKPFKNLADFCERVDPKIVGKRVFESLIMAGALDCFGHDRAQMMAG 926

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            ++ +   A   ++N  +   +IF    G  S  + L       ++ R   E +V+GFY S
Sbjct: 927  VERMMGLASLAQQNAVSGQADIFGASLGAQSQALNLPATDPWLAADRLHREFQVVGFYLS 986

Query: 965  GHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPLD YK  L+KM ++ + E S A  RG +  RLA  V SKQ++KTR G+++G V FS+
Sbjct: 987  AHPLDEYKAALQKMRVQNWAEFSAAVKRGASAGRLAGTVTSKQERKTRTGNKMGVVAFSD 1046

Query: 1023 PAKEYEANFF 1032
             + +YEA  F
Sbjct: 1047 TSGQYEAVLF 1056


>gi|77918826|ref|YP_356641.1| DNA polymerase III subunit alpha [Pelobacter carbinolicus DSM 2380]
 gi|77544909|gb|ABA88471.1| DNA polymerase III, alpha subunit [Pelobacter carbinolicus DSM 2380]
          Length = 1156

 Score = 1148 bits (2970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 436/1042 (41%), Positives = 623/1042 (59%), Gaps = 23/1042 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +EK P FVHL VH+ YSLL+GA+ + +++ +      PA+AITD  N+F A+EF  K   
Sbjct: 1    MEKVP-FVHLHVHTQYSLLDGAIRIGDLIKRAEDCGMPAVAITDHGNMFGAVEFFSKLKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            + ++PI+GC++ +      + +N           +VLL    EGYQ L  +VS  Y  + 
Sbjct: 60   SSVKPIVGCEVYVAPGSRFEKSN--VRGGDKAYHLVLLCQDIEGYQNLCRMVSAGY-REG 116

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 RI    L++   +GLI LT    G +         + A  R      +F  +RLY
Sbjct: 117  FYYKPRIDWDLLRKY-NKGLIALTACLGGELPSLLMQGKHEQAVARARDMAAIFDENRLY 175

Query: 184  VNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ +   ++      ++ +     LPLVATN+  +L+ E   AH+VL+ V     +  
Sbjct: 176  LELQENFIAEQKPVNEGLIAIGKELGLPLVATNDCHYLTRESAAAHEVLLCVQTGKTMDD 235

Query: 243  KDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             DR R + D  YLK   EM  +F   PEAL NTV IA RC+  L       P++ +    
Sbjct: 236  PDRFRFSNDEFYLKTPEEMAELFHYAPEALANTVAIADRCNLELDFDTYHFPQYEKP--- 292

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAK----GYHAQDYRQRLDFELNVIARMKFSGYF 357
              +K  +  L   +  GLE RLA+    +        + Y  RL  EL  I  M F GYF
Sbjct: 293  -AEKTLDQVLEEDSWRGLEERLAEIRKVRPDFSAEEEKVYHDRLVRELECINSMGFPGYF 351

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK N IPVGPGRGS AGS+ AYA+ ITDIDP+ ++LLFERFLNP+R+SMPD
Sbjct: 352  LIVADFINWAKDNGIPVGPGRGSAAGSLVAYAIRITDIDPIPYNLLFERFLNPERVSMPD 411

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DFC   R++VI YV+ KYG E VAQIITFG++ AK  +RDVGRAL M Y  VDR+ K
Sbjct: 412  IDVDFCIYGREDVIEYVRQKYGEENVAQIITFGTMMAKGVIRDVGRALNMSYGDVDRIAK 471

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+P      +  +A+  + R +E +  DP V +LL+I+  LEGL RHASTHAAG+V+  +
Sbjct: 472  LVPTVLNITLK-EALEQEPRLQELQDKDPQVKQLLDIALTLEGLTRHASTHAAGVVVTPK 530

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596
            PLS+ +P+Y D +S   VTQF MK++E+ GL+KFDFLGLKTLT++  ++  + +    + 
Sbjct: 531  PLSEYLPLYTDPKSGGQVTQFPMKYVEQIGLVKFDFLGLKTLTVIANAVRLIHEGNDPEF 590

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL L+  DD +TY LL+   T G+FQLESSGM++ L  ++P C EDIIA+ +LYRPGP+ 
Sbjct: 591  DLKLVGDDDPDTYRLLSAGETTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLG 650

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +V  +  RK+GK++I    P ++P+LK+T GVI+YQEQVM IAQ+L+ YSL  AD+LR
Sbjct: 651  SGMVDDFILRKHGKKEITYDFPQLEPILKDTYGVIVYQEQVMLIAQVLARYSLGGADLLR 710

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQKE F+SGA +N +    A  +F+L+ KFA YGFNKSH+AAYA+++Y
Sbjct: 711  RAMGKKKPEEMAKQKEIFMSGARENELDVKKAEAVFDLMEKFAAYGFNKSHSAAYALVAY 770

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TA++KTHYPVEF+AA +T +M+N EK+ K   + R   I+++PP +N     F V DN 
Sbjct: 771  HTAYLKTHYPVEFMAALLTEDMENTEKVIKNINEVRSMGIEVLPPDINASSSSFTVHDNA 830

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I + L A+KGVG      I+E   ++PF +L +FC RVD +K+N++V+E+L+  GA D  
Sbjct: 831  IRFGLGAVKGVGGAAIDAILEVRQEQPFTTLHEFCERVDLRKVNKKVVEALIKCGAFDSL 890

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT---LEKFSVENSSVR 951
            G  R Q L  L+   +  Q V++ +     ++F  ++       +   L +    +  V+
Sbjct: 891  GGHRAQYLVVLEEAMEIGQKVQREKAEGQASLFGTDEIVSQRGTSYGVLPEMEEWSDKVK 950

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               E+  LGFY +GHPL  Y+ ++R+       +         +RL  MV   +   T+K
Sbjct: 951  LGFEKESLGFYITGHPLGRYQEVIRRFANCTTADVAERADKEEVRLCGMVSGIKDLVTKK 1010

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G R+ +VT  + +   E   FP
Sbjct: 1011 GERMAFVTLEDLSGFVEMVVFP 1032


>gi|319783852|ref|YP_004143328.1| DNA polymerase III subunit alpha [Mesorhizobium ciceri biovar
            biserrulae WSM1271]
 gi|317169740|gb|ADV13278.1| DNA polymerase III, alpha subunit [Mesorhizobium ciceri biovar
            biserrulae WSM1271]
          Length = 1175

 Score = 1148 bits (2969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 586/1029 (56%), Positives = 753/1029 (73%), Gaps = 8/1029 (0%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS+YSLLEGAL +  ++     D+ PAIA+TDTNNLF ALEF+QKA   GIQPI
Sbjct: 29   FVHLRVHSAYSLLEGALQIGKVVAHAVKDEAPAIAVTDTNNLFGALEFAQKAVKDGIQPI 88

Query: 71   IGCQLDIDM-QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IGCQ  +    +N       +   P +  +VLL +T  GY  L+ LVSR+YL     ++V
Sbjct: 89   IGCQTALAFSGENSDGQRDRRRQGPDMRPVVLLAATEAGYSNLVRLVSRVYLETPPGEAV 148

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +      E   +GLI L+GG  GPI  A   +   +AE RLLT K +FGDRLYV L R 
Sbjct: 149  HLTTEM-MEGYCDGLICLSGGPRGPIGTALKEDRRDLAEARLLTLKDMFGDRLYVELDRV 207

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             GYDR  E   + LAY HELPLVATN + F S +DY+AHD L+A+A  +VV+  +R R++
Sbjct: 208  SGYDRVIEKSSIDLAYAHELPLVATNEAFFSSRDDYDAHDALIAIAEGSVVAADNRRRLS 267

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD---IQKE 306
            PD++L+++++M  +F+DLPEA++NTVEIA RCS+  +   PILPRF   +  D     + 
Sbjct: 268  PDNFLRSQADMARLFADLPEAIDNTVEIALRCSYYPKNRNPILPRFTGGDVADNDAAVQA 327

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E +EL  +A  GL+ RLA      GY  + YR+RL+FEL +I +MKF GYFLIVADFI+W
Sbjct: 328  EADELARQAHEGLDARLAMHGPTAGYTVEQYRERLNFELGIITKMKFPGYFLIVADFIKW 387

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGSGAGS+ AY+ TITDIDPLRFSLLFERFLNPDR+SMPDFDIDFCQDR
Sbjct: 388  AKAQGIPVGPGRGSGAGSLVAYSTTITDIDPLRFSLLFERFLNPDRVSMPDFDIDFCQDR 447

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVIRYVQ KYG ++V QIITFG+LQA+A LRDVGR LQMPY QVD+L K++P +PA+P
Sbjct: 448  REEVIRYVQQKYGRDQVGQIITFGTLQARAVLRDVGRVLQMPYGQVDKLSKMVPQNPANP 507

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V L  AIA++ RF E    +P V  LL+++QKLEGLYRHASTHAAGIVIGDRPLS+LVPM
Sbjct: 508  VKLADAIANEPRFAEEAEREPIVQTLLDMAQKLEGLYRHASTHAAGIVIGDRPLSELVPM 567

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++  + +RG+++DL+ IP DD
Sbjct: 568  YRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLETAVKLIRRRGIEIDLATIPLDD 627

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             ETY +L+    +G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN RK
Sbjct: 628  PETYAMLSRGEVVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPTYNARK 687

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+E++ SIHP ID ++KETQGVI+YQEQVMQIAQ LSGYSL EAD+LRRAMGKKI+ EM
Sbjct: 688  HGEEEMASIHPKIDHLVKETQGVIVYQEQVMQIAQELSGYSLGEADLLRRAMGKKIRAEM 747

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            DKQ+ERF+SGA + G+ K  A  IF+LLAKFADYGFNKSHAAAYAV+SYQTA++K HYPV
Sbjct: 748  DKQRERFVSGAVERGVGKPQADFIFDLLAKFADYGFNKSHAAAYAVVSYQTAYLKAHYPV 807

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EFLAASMTL+M N +K+  F QDA +  I+++ PSV +    F+VG+NRIYYSLAA+KGV
Sbjct: 808  EFLAASMTLDMGNTDKLADFRQDALRLGIEVLAPSVTSSFRPFEVGENRIYYSLAALKGV 867

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G     HI+    +KPF +L DFC RVD K + +RV ESL+ AGALDCFG+ R  ++  +
Sbjct: 868  GDAAVEHIVAQRGEKPFKNLADFCERVDPKIVGKRVFESLIMAGALDCFGHDRASMMAGV 927

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            + +   A   ++N  +   +IF    G  S  + L       ++ R   E +V+GFY S 
Sbjct: 928  ERMMGLASLAQQNAVSGQHDIFGASLGAQSQALNLPATEPWLAADRLHREFQVVGFYLSA 987

Query: 966  HPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            HPLD YK  L+KM ++ + E S A  RG    RLA  V SKQ++KTR G+++G + FS+ 
Sbjct: 988  HPLDEYKAALQKMRVQTWAEFSAAVKRGAAAGRLAGTVTSKQERKTRTGNKMGVIAFSDT 1047

Query: 1024 AKEYEANFF 1032
            + +YEA  F
Sbjct: 1048 SGQYEAVLF 1056


>gi|78222430|ref|YP_384177.1| DNA polymerase III subunit alpha [Geobacter metallireducens GS-15]
 gi|78193685|gb|ABB31452.1| DNA polymerase III, alpha subunit [Geobacter metallireducens GS-15]
          Length = 1155

 Score = 1148 bits (2969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1038 (40%), Positives = 619/1038 (59%), Gaps = 22/1038 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA+ L +++ K      PA+AITD   +F A+EF  K    G++P
Sbjct: 2    SFVHLHLHTQYSLLDGAIRLGDLIKKAKDTDMPAVAITDHGVMFGAMEFYLKCKDKGVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ I          +G         ++LL     GY+ L +LVS  +  +      
Sbjct: 62   IIGSEVYIAPGSRFVKEVKGGEAGAGY-HLLLLCENMTGYRNLSKLVSVGF-KEGFYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +  +EGLI L+    G +      +  + A      +  LF DR Y+ LQ +
Sbjct: 120  RIDKEVLAQY-SEGLICLSACLKGEVAYLCERDRMEEAIGVARWYADLFPDRYYIELQEN 178

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +    ++++A    LPLVATN+  +L+ ED  AH+VL+ +     ++   R R 
Sbjct: 179  GLAEQDKANKGLLEVAREVGLPLVATNDCHYLNREDARAHEVLLCIQTGKTMNDSARMRF 238

Query: 249  TPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            + D +  K   EM + F   PEA+ NTV+IA RC+          P+F       + +  
Sbjct: 239  STDEFYVKTPEEMAAAFHYAPEAVSNTVKIAERCNLDFDFKTYYFPQFDPP----VGQTL 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKG----YHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +  L + A  GLE RL +  +          Q Y +RL  EL+ I +M F GYFLIVADF
Sbjct: 295  DQMLEDAARKGLEFRLKEIRLKNPDMSPEQEQKYWERLRIELDCITQMGFPGYFLIVADF 354

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I WAK + IPVGPGRGS AGS+ AY++ ITD+DPL ++LLFERFLNP+R+SMPD D+DFC
Sbjct: 355  INWAKDHGIPVGPGRGSAAGSLVAYSIRITDLDPLPYNLLFERFLNPERISMPDIDVDFC 414

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRR+EVI YV  KYG ++V QIITFG++ A+A +RDVGRAL M Y  VD++ KL+P   
Sbjct: 415  QDRREEVIHYVTGKYGRDQVCQIITFGTMSARAVIRDVGRALDMTYGDVDKIAKLVPEVL 474

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +   AIA + R +EA  AD  V  LLEI  +LEGL RHASTHAAG+V+  + L +  
Sbjct: 475  GIKLK-DAIAQEPRLKEASEADSRVKELLEIGLRLEGLARHASTHAAGVVVAPKVLEEFC 533

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+Y+D ++    TQ++MK++EK GL+KFDFLGLK LT++  ++  +   +    D++ + 
Sbjct: 534  PVYKDQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIHNAVKIIRAGKDPNFDIAALR 593

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD  +Y L++   T G+FQLESSGM+  L  ++P C ED+IA  +LYRPGP+ + +V  
Sbjct: 594  DDDRASYDLISAGNTTGVFQLESSGMKDMLVKLKPSCFEDVIAACALYRPGPLGSGMVDD 653

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + +RK+G++K+V   P ++P+LK+T GVI+YQEQVMQIA+ L+GYSL  AD+LRRAMGKK
Sbjct: 654  FIDRKHGRKKVVYDLPQLEPILKDTYGVIVYQEQVMQIARTLAGYSLGGADLLRRAMGKK 713

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               EM KQ++ F+ GA   G+    A  IF+L+AKFA+YGFNKSH+AAYA+++YQTA++K
Sbjct: 714  DPAEMAKQRDIFLEGAKNGGVDLQKAGAIFDLMAKFAEYGFNKSHSAAYALVAYQTAYLK 773

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAA +T +M N +K+ K   D R+  I+I+PP +N   + F+V  N I + L 
Sbjct: 774  AHYPVEFLAALLTEDMGNTDKVVKTISDCREMGIEILPPDINDSHLSFRVLGNSIRFGLG 833

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            A+K VG      I+EA  +  F  L DFC RVD  K+N+RV+ESLV  GA D  G  R Q
Sbjct: 834  AVKNVGEGAIEAIIEARQEGDFKDLFDFCERVDLHKVNKRVVESLVKCGAFDSTGGRRSQ 893

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-----GTFSDKITLEKFSVENSSVRFENE 955
            L+ +L++     Q +++ R +   ++F  E+     G    K+ L      +  ++   E
Sbjct: 894  LMSALEDAMAIGQKIQQERESAQVSLFGVEEIVRTNGNGKGKVQLPDIPEWDDKLKLGLE 953

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LGF+ +GHPL  Y+  +++               + ++L  +V S ++  T+KG R+
Sbjct: 954  KEALGFFITGHPLGRYEKEIKRFANVDTATLDERADKSEVKLCGIVTSLKELITKKGDRM 1013

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             + T  +     E   FP
Sbjct: 1014 AFATLEDLLGSVEVVVFP 1031


>gi|258514118|ref|YP_003190340.1| DNA polymerase III DnaE [Desulfotomaculum acetoxidans DSM 771]
 gi|257777823|gb|ACV61717.1| DNA polymerase III, alpha subunit [Desulfotomaculum acetoxidans DSM
            771]
          Length = 1145

 Score = 1147 bits (2966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1034 (38%), Positives = 613/1034 (59%), Gaps = 26/1034 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PSFVHL VH+ YSLL+GA  +  ++ K  +    A+AITD   +F  ++F +     GI+
Sbjct: 2    PSFVHLHVHTEYSLLDGAARIKEVVKKAKSLGMSALAITDHGVMFGVVDFFKACKKEGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+GC++ +  +     T +       +  +VLL     GY+ L+ LVS  +        
Sbjct: 62   PILGCEVYVAPRSRHDRTPR---VDDNLYHLVLLAKNETGYRNLLNLVSISFTEG-FYYK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
             R+    L    +EGLI L+G  +G +      +  + A      + K+F  D  Y+ +Q
Sbjct: 118  PRVDKEVLAMY-SEGLIALSGCIAGEVAEYILKDLPEQARAAAAEYLKIFGEDNYYLEIQ 176

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++ +   ++V+++    +PLVATN+  ++++E+ E  DVL+ +     V    R 
Sbjct: 177  DHSFPEQKKANRELVKISEELNIPLVATNDVHYVAKENAEMQDVLLCIQTGKTVDDPKRM 236

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  + + YLK+  EM  +F +LP+AL+NTV IA +C   ++     LP +   E   +  
Sbjct: 237  KFQSQEFYLKSPEEMAELFPELPQALQNTVSIADKCEISMEFGQLHLPFYQVPEGHTV-- 294

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E+ LR     GL  R            +  RQR++FEL+VI +M +S YFLIV DFI 
Sbjct: 295  --ESYLRELCEKGLLDRYG------AAPEESVRQRMEFELSVIEQMGYSAYFLIVWDFID 346

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A++N +PVGPGRGS AGS+ +Y L IT++DPL++ LLFERFLNP+R+SMPD DID C +
Sbjct: 347  YARQNGVPVGPGRGSAAGSLVSYVLGITNLDPLKYDLLFERFLNPERVSMPDIDIDICYE 406

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR++VI YV  KYG ERVAQI TFG++ AK A+RDVGRAL M Y +VDR+ KL+P +   
Sbjct: 407  RRNKVIEYVVRKYGAERVAQIATFGTMAAKGAIRDVGRALAMSYGEVDRVAKLVPAELHM 466

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A++++    EA   +P V RL++ ++ LEG+ RHASTHAAG+VI  +PL+  +P+
Sbjct: 467  TIE-KALSENQDLLEAYNNEPEVRRLIDTAKGLEGMPRHASTHAAGVVITKQPLTHYLPL 525

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
            Y+        TQF  + +E+ GL+K D LGL+TLT++  ++  + +R    +D+  I  +
Sbjct: 526  YKST-DGPVTTQFAKEPVEELGLLKMDLLGLRTLTVIADAVAEVNKRAGSPLDIDKITLE 584

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
            D  T+ LL+    +G+FQLESSGMR  L  ++P+  EDI+ALV+LYRPGP+ + +V  + 
Sbjct: 585  DKNTFDLLSRGEGIGVFQLESSGMRAILRDLKPEVFEDIVALVALYRPGPLGSGMVDDFI 644

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K+G +K+  +HP+++P+LK+T GVI+YQEQVM+I+  L+G+SL EAD+LRRAMGKK  
Sbjct: 645  KNKHGLQKVSYLHPILEPILKDTYGVILYQEQVMRISSDLAGFSLGEADLLRRAMGKKKP 704

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E +   + +F+ GA+K  +   +A  +F+L+  FA YGFNKSH+AAYA++SYQTA++K +
Sbjct: 705  EVIAGLRSQFMEGAAKKDVDPEVAGKVFDLMEFFAGYGFNKSHSAAYALVSYQTAYLKAN 764

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP EF+AA +T   DN +K+  + ++ R+  I ++PP VN     F V  ++I + LAA+
Sbjct: 765  YPAEFMAALLTSVRDNSDKVAVYIEECRRMGIVVLPPDVNESRDGFTVVGDKIRFGLAAM 824

Query: 843  KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K VG      I+       PF +  DFC+R+D++ +NRRVLESL+  GA D  G+ R QL
Sbjct: 825  KNVGLAAVYSIISMREQGGPFKNYADFCNRLDTRVVNRRVLESLIKGGAFDSLGHRRAQL 884

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT--LEKFSVENSSVRFENEQRVL 959
            +  +D     AQ  +++R +   ++F   +      ++  L   +    S     E+  L
Sbjct: 885  MAVVDTGLSIAQQAQRDRNSGQMSLFEFLEEEEEYNLSFVLPDIAEYLYSEMLALEKESL 944

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G Y SGHPL  Y+ +LR+       E      G  + L  ++++ +Q  T+KG  + +V 
Sbjct: 945  GLYISGHPLAEYREVLRQNDTVNAGELPDFTEGETVALGGLIINYKQITTKKGDAMAFVN 1004

Query: 1020 FSEPAKEYEANFFP 1033
              +     E   FP
Sbjct: 1005 LEDLTGVVEVVIFP 1018


>gi|154253636|ref|YP_001414460.1| DNA polymerase III subunit alpha [Parvibaculum lavamentivorans DS-1]
 gi|154157586|gb|ABS64803.1| DNA polymerase III, alpha subunit [Parvibaculum lavamentivorans DS-1]
          Length = 1139

 Score = 1145 bits (2963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 534/1030 (51%), Positives = 698/1030 (67%), Gaps = 14/1030 (1%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            +  P F+HL++HS+YSLLEGA+ + +I     A+  PAIA+TDT NLF ALEFS+     
Sbjct: 3    DSPPKFIHLRLHSAYSLLEGAIRIKDIPKLCKANGMPAIALTDTANLFGALEFSETLAKE 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GIQPI GC L + + D      +G        ++ LL     GY+ L++L S  +L    
Sbjct: 63   GIQPITGCTLPVLL-DTSDEPTRGPIRREPSGNLALLAKDERGYENLMKLSSLAFLGPDA 121

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             +   + +  ++E   EGLI LTGG  G ++R         A + LL  K++FGDRLYV 
Sbjct: 122  AEPAHVTMEKVEEF-QEGLICLTGGPDGLVNRLIEAGQPDAAAELLLRLKRIFGDRLYVE 180

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQRH    ++  E  +++LAY HELPLVATN   F  E +YEAHD L+ +A    V Q D
Sbjct: 181  LQRHDLPREQIVEGPLIELAYKHELPLVATNEPYFTRESEYEAHDALICIAAGAYVVQSD 240

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TP H  K++ EM ++F+DLPEA+ENTVEIARRC++  Q   PILP+F         
Sbjct: 241  RRRLTPQHRFKSQDEMAALFADLPEAIENTVEIARRCAYRPQTRNPILPKFA------AG 294

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              E +ELR +A  GL +RLA   +      ++YR RL+FEL+VI +M F GYFLIVADFI
Sbjct: 295  TSEADELRRQAEEGLTMRLA--TLEAVAPEEEYRARLNFELDVIIKMDFPGYFLIVADFI 352

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK   IPVGPGRGSGAGSV A+ALTITD+DPLRF LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 353  KWAKGQGIPVGPGRGSGAGSVVAWALTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQ 412

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRRDEVIRYVQ +YG ++VAQIITFG LQA+A LRDVGR LQMPY QVDRLCKL+PN+PA
Sbjct: 413  DRRDEVIRYVQARYGEDKVAQIITFGKLQARAVLRDVGRVLQMPYGQVDRLCKLVPNNPA 472

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             PV+L +AI  + R +E + AD +V +LLEI Q LEGLYRHASTHAAG+VIGDRPL +LV
Sbjct: 473  APVTLPEAIKGEPRLQEEQRADETVAKLLEIGQSLEGLYRHASTHAAGVVIGDRPLDELV 532

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+YRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L +++  LA+R +++DL  +P 
Sbjct: 533  PLYRDPRSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDRAVKLLARRDIQIDLLNLPL 592

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D +T+ +L    T+G+FQLESSGMR  L  ++ D  EDIIALV+LYRPGP+DNI  Y  
Sbjct: 593  ADEKTFAMLGRGETIGVFQLESSGMRDVLRKLEADRFEDIIALVALYRPGPMDNIPSYVK 652

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G EK   +HPL++P+LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK 
Sbjct: 653  RKHGTEKPDYLHPLLEPVLKETHGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGKKIKA 712

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM+ QKERF++GA    I K  A +IFEL+ KFA YGFNKSHAAAYA+++YQTAW+K ++
Sbjct: 713  EMEAQKERFVTGAVAKQIDKAQAASIFELVDKFAGYGFNKSHAAAYALVAYQTAWLKANH 772

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASM+L++ N +K+  F Q+A +  +++  P +N     F V D  I Y+LAAIK
Sbjct: 773  PVEFLAASMSLDLGNTDKLGLFKQEAERLGLKVRRPCINRSEGLFGVADGEILYALAAIK 832

Query: 844  GVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG     HI+E      PF  L DF  R++ + +N+R  E+L  AGA D    +R Q+L
Sbjct: 833  NVGLQAMEHIVEVRREGGPFRDLFDFARRINPRLINKRTFENLARAGAFDALNPNRAQVL 892

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             + D +   A    + R +K   +F  E G  +    L          R   E   +GFY
Sbjct: 893  AAADLLLGTANVAAQERESKQVGLFGEESGVAAAHPALPAIEPWLPMDRLTEEFNAVGFY 952

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             SGHPLD Y+  L++ G+  Y E +        ++A  V +KQ++K++KG+   +++ S+
Sbjct: 953  LSGHPLDDYRTALQRAGVVTYAELLGKTS-TAAKIAGTVTAKQERKSKKGNPFAFLSLSD 1011

Query: 1023 PAKEYEANFF 1032
            P  ++E   F
Sbjct: 1012 PTGQFEIVVF 1021


>gi|209885082|ref|YP_002288939.1| DNA polymerase III subunit alpha [Oligotropha carboxidovorans OM5]
 gi|209873278|gb|ACI93074.1| DNA polymerase III subunit alpha [Oligotropha carboxidovorans OM5]
          Length = 1157

 Score = 1144 bits (2959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 537/1032 (52%), Positives = 710/1032 (68%), Gaps = 12/1032 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SP F+HL VHS+YSLL+G++    +     AD QPA+A+TD +N+F ALEFS+K    GI
Sbjct: 3    SPGFIHLHVHSAYSLLQGSMKTEKLAALAKADNQPALALTDRDNMFGALEFSEKLAGLGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            QPIIGC L +D  D                 IVLL  T + Y+ L+ L SR +L    +Q
Sbjct: 63   QPIIGCALAVDFGD--VDPAARNAAALAPARIVLLAPTEDSYRSLMRLNSRAFLEMPAQQ 120

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            +  I   WL E    GLI LTGG  GPI +A      ++A +R+     LFGDRLY+ LQ
Sbjct: 121  TPHIKAEWL-EQERTGLIALTGGPEGPISQALMAEHPELALQRVEKLADLFGDRLYLELQ 179

Query: 188  RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH    +R  ES ++ +AY   LPLVATN   F + EDYE+HD L+ +A   ++++ +R 
Sbjct: 180  RHGLDSERRIESALIDIAYGKGLPLVATNEPYFATVEDYESHDALLCIAGGRLLAETERA 239

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK--ECDDIQ 304
             +TPDH  K R+EM  +F+DLPEAL +TVEIA+RC+F  +   PILP F        D  
Sbjct: 240  HLTPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAFRPRKRKPILPHFTVDSDHMADAV 299

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             +E  EL+ +A  GL  RL    +A+G   +DYR RL +E++VI RM +SGYFLIV+DFI
Sbjct: 300  SKENAELQKQAEEGLARRLKAHGLAEGKTEEDYRTRLAYEMSVITRMNYSGYFLIVSDFI 359

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK   IPVGPGRGSGAGS+ AYALTITD+DPLRF+LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 360  KWAKSQGIPVGPGRGSGAGSLVAYALTITDLDPLRFALLFERFLNPERVSMPDFDIDFCQ 419

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR EVI YVQ +YG + VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P +PA
Sbjct: 420  DRRGEVIDYVQRRYGADHVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA 479

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             PV+L +AI  + + +  R  DP V R  +I+Q+LEGL RHASTHAAGIVIGDRPLS+LV
Sbjct: 480  APVTLAKAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELV 539

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L Q  + VDL+ +P 
Sbjct: 540  PLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQSNIHVDLAHLPL 599

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +TY +LT    +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  Y  
Sbjct: 600  DDKQTYDMLTRGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCA 659

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMGKKI+ 
Sbjct: 660  RKHGDEEPEYLHPVLEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGKKIRA 719

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM+KQ+ RF+SG+ ++ ISK+ A  IFELLAKFADYGFNKSHAAAYA++SYQTA+MK HY
Sbjct: 720  EMEKQRVRFVSGSVEHSISKSQADQIFELLAKFADYGFNKSHAAAYALVSYQTAYMKAHY 779

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+AASMTL+  N +K+ +F  +A++  I++ PPS+N     F VG+N I+YSLAA+K
Sbjct: 780  PVEFIAASMTLDTGNTDKLSEFRAEAQRLGIKVEPPSINRSEGTFTVGENTIFYSLAALK 839

Query: 844  GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVGT     I+EA  +  PF SL DF +RV  + +N+RVLESL  AGA D    +R  + 
Sbjct: 840  GVGTHAVDMIVEARKNGGPFTSLSDFAARVPPRAINKRVLESLAAAGAFDTIEPNRAAVF 899

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
               D I    Q   +       ++F  + G     ITL        + R + E   +GF+
Sbjct: 900  AGADAILAACQRSHEEAVLGQSDMFGGQTG--GPVITLPHVEPWLPAERLQREYGAVGFF 957

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTF 1020
             SGHPLD YK +L+++ ++ + E  + ++      ++AA VVS+ +++T+ G+++G +  
Sbjct: 958  LSGHPLDDYKVVLQRLNVQSWAEFASAVKNGRTAGKVAATVVSRMERRTKTGNKMGIIGL 1017

Query: 1021 SEPAKEYEANFF 1032
            S+P   +EA  F
Sbjct: 1018 SDPTGHFEAVLF 1029


>gi|158423315|ref|YP_001524607.1| DNA polymerase III subunit alpha [Azorhizobium caulinodans ORS 571]
 gi|158330204|dbj|BAF87689.1| DNA polymerase III alpha subunit [Azorhizobium caulinodans ORS 571]
          Length = 1144

 Score = 1143 bits (2957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 545/1030 (52%), Positives = 727/1030 (70%), Gaps = 11/1030 (1%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            + P FVHL VHSSYSLLEGAL+L  + D   AD QPA+A+TDT NLF ALEFS+K   AG
Sbjct: 2    RDPGFVHLHVHSSYSLLEGALTLGKLADFAKADAQPALALTDTGNLFGALEFSEKMYGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPI GC L +D+ + +      +   P  P IVLL +  +G++ L+ LVSR YL     
Sbjct: 62   IQPIAGCSLALDLPEPVAP----RGIVPKKPRIVLLAAREQGWRNLMTLVSRAYLETPDG 117

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            +  R+ L WL E+  +GLI LTGG +GP+D+A       VA  RL     ++GDRLYV L
Sbjct: 118  EEPRVTLDWLSEL-NDGLIALTGGPAGPLDKALVAGHGDVAASRLDQLTAIYGDRLYVEL 176

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH    +R  E  ++ LAY   LPLVA N   F ++ DY AHD L+A+A S ++S+ DR
Sbjct: 177  QRHNWDPERIAEPGLLDLAYAKGLPLVAANEPFFGAQSDYNAHDALIAIAESKLLSEGDR 236

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R+TP+H  K R+EM+ +F+DLPEA  NTVEIA+RC++ ++   PILPRF      D   
Sbjct: 237  RRLTPEHRFKTRAEMLELFADLPEATANTVEIAQRCAYRVRTAKPILPRFTSGGGGDALA 296

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            EE  EL  +A  GL  RLA+   A+G   + Y +RL +E++VI +MKF GYFLIV+DFI+
Sbjct: 297  EEAAELERQAQEGLAARLAKHGPAEGLDTKIYEERLAYEISVITKMKFPGYFLIVSDFIK 356

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK ++IPVGPGRGSGAGS+ AY+L ITD+DPLRF LLFERFLNPDR+SMPDFD+DFCQD
Sbjct: 357  WAKAHDIPVGPGRGSGAGSLVAYSLQITDLDPLRFGLLFERFLNPDRVSMPDFDVDFCQD 416

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI YVQ +YG  +VAQIITFG+LQA+  LRDVGR L+MPY QVD+LCKL+P +PA+
Sbjct: 417  RREEVIDYVQKRYGRSQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLCKLVPQNPAN 476

Query: 486  PVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            PV+L+ AI ++ R +EAR  +  V +  +I+ +LEGL RHASTHAAGIVIGDRPL +LVP
Sbjct: 477  PVTLKQAIEEEPRLQEARDEEEVVKQAFDIAVRLEGLNRHASTHAAGIVIGDRPLHELVP 536

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +YRD +SD+PVTQ+NMKW+E+AGL+KFDFLGLKTLT +  ++  + QRG+ +D+S IP D
Sbjct: 537  LYRDPKSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTTITTAVKLIRQRGIDLDISKIPLD 596

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY +L    T+G+FQ+ES+GMR+AL  M+ D IED+IALV+LYRPGP+ NI VY + 
Sbjct: 597  DPKTYAMLARGETVGVFQVESAGMRRALVDMKADRIEDLIALVALYRPGPMANIPVYCDC 656

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+ +   IHP ++P LKET GVIIYQEQVMQIAQ LSGYSL EAD+LRRAMGKKI+ E
Sbjct: 657  KHGRAEPDYIHPKLEPYLKETFGVIIYQEQVMQIAQALSGYSLGEADLLRRAMGKKIRAE 716

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M+KQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA+++YQTAW+K +Y 
Sbjct: 717  MEKQRARFVDGAQERGVPKAQADTIFDLLAKFADYGFNKSHAAAYALVAYQTAWLKANYA 776

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EFLAASMTL+M N +K+ +F Q+A++  IQ++PP++N    DF V D +I Y++AAIKG
Sbjct: 777  TEFLAASMTLDMGNTDKLAEFRQEAQRLGIQVVPPNINLSHRDFAVVDGKIIYAMAAIKG 836

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG      ++ +   +PF  L DF +R   K LN+R LE+L  AG  D    +R ++  +
Sbjct: 837  VGGHAVDALVASRGKEPFTDLADFANRFPVKHLNKRTLENLAAAGCFDVLEKNRARVFAA 896

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            LD +  +AQ VE +R++   ++F    G    K+ L        + R + E   +GF+ +
Sbjct: 897  LDAVVAHAQRVEADRSSGQNDMFG--SGPVKAKLPLPDAQPWEPAERLKREYDTIGFFLT 954

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            GHPLD Y P L+KM ++ + +    +R      RLAA VVS+Q++KT+ G+R+G V  S+
Sbjct: 955  GHPLDDYAPALKKMRVQQFSDFSRAVRQGAAAGRLAATVVSRQERKTKTGNRMGIVGLSD 1014

Query: 1023 PAKEYEANFF 1032
            P+  +EA  F
Sbjct: 1015 PSGHFEAVLF 1024


>gi|307265890|ref|ZP_07547439.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
            Rt8.B1]
 gi|306919059|gb|EFN49284.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
            Rt8.B1]
          Length = 1145

 Score = 1143 bits (2956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1049 (36%), Positives = 604/1049 (57%), Gaps = 45/1049 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G+  + +++ K       AIAITD   ++ A++F ++A A GI+PI
Sbjct: 2    FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGAIDFYKEAVAQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +    M ++          +VLL     GY+ L+++V+   +        R
Sbjct: 62   IGCEIYVAPRS---MQDREYGIDNENYHLVLLAKDMTGYKNLMKIVTVASIEG-FYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            +   +L+E  +EGLI L+   +G +         + A++  L +  +F     Y+ LQ H
Sbjct: 118  VDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLELQDH 176

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +   ++++L+    +PLVATN+  +L ++D +AH+VL+ +     +  +DR   
Sbjct: 177  GILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDEDRMSF 236

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM ++FS   EA+ENT +IA  C+   + +   LP++   E  D     
Sbjct: 237  PTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVD----S 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LRN    GL  R           +++  +RLD+EL+VI +M +  YFLIV DFI++A
Sbjct: 293  YEYLRNLCYEGLYKRYKN-------PSKEVIERLDYELSVIKQMGYVDYFLIVWDFIKFA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N I  GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC +RR
Sbjct: 346  KDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL  PY++VD + K+IP +    +
Sbjct: 406  QEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDTIAKMIPFELGMTI 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A++ +   +     +  V +L++IS+ LEGL RHASTHAAG+VI   PL   VP+ +
Sbjct: 466  D-KALSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYVPLQK 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + + +GV +D   + +DD 
Sbjct: 525  --NEDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVIIDFDSMEYDDP 582

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y L++   T G+FQLES GM+Q +  ++P  +EDIIA +SLYRPGP+D I  Y   +N
Sbjct: 583  KVYELISKGETEGVFQLESPGMKQFMTELKPKNLEDIIAGISLYRPGPMDQIPRYLANRN 642

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E IV  HPL+ P+L  T G ++YQEQVMQI + ++GYSL  +D++RRAM KK  + M+
Sbjct: 643  HPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKMDVME 702

Query: 727  KQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI G              +NG+ +  A  +F+ +  FA+Y FNKSHAAAYAVI+Y
Sbjct: 703  QERKNFIYGIVDEEGNVIVPGALRNGLDEATANKLFDEMLDFANYAFNKSHAAAYAVIAY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEF+AA +   +DN++KI  + Q  ++  I+++PP +N     F V +++
Sbjct: 763  QTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVQVCKKMGIKVLPPDINESDSYFTVVEDK 822

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L+A+K VG      I+ E   +  F S+ DF  R+   +LN++ +ESL+ AGA   
Sbjct: 823  IRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAGAFSS 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG  R QLL   D + +  +    N  N   ++F   + +   +           +    
Sbjct: 883  FGVRRSQLLSVYDKLMENIKKNRNNNLNGQISLFGEVEQSHGVEFEFPDLEEFPKNRLLS 942

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---------ATIRGNNIRLAAMVVSK 1004
             E+  LG Y SGHPL+ Y   + K+      +                  + +A ++ +K
Sbjct: 943  MEKETLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQEVVIAGVIATK 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + K T+  + + +VT  +     E   FP
Sbjct: 1003 KIKFTKNNNMMAFVTIEDLYGTVEVIVFP 1031


>gi|121602736|ref|YP_989159.1| DNA polymerase III subunit alpha [Bartonella bacilliformis KC583]
 gi|120614913|gb|ABM45514.1| DNA polymerase III, alpha subunit [Bartonella bacilliformis KC583]
          Length = 1161

 Score = 1142 bits (2955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 594/1029 (57%), Positives = 759/1029 (73%), Gaps = 7/1029 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS+YSLLEGA+ +  I+    +D  PAIAITDTNNLF ALEFSQ   A GIQ
Sbjct: 16   PRFIHLRVHSAYSLLEGAIKIPQIVQHAVSDNAPAIAITDTNNLFGALEFSQYCFAEGIQ 75

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFP-TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQ+ ID  D    +   K  +P   PS+VL  ++  GY  L+ LVSR YL +    
Sbjct: 76   PIIGCQIAIDFGDKDDHSRLAKYHYPSDFPSVVLFAASKTGYACLVRLVSRAYLDEHNTN 135

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL    +EG+I LTGGS GPI+ A   +  + A +RL+  K++FGDRLY+ LQ
Sbjct: 136  FPHIKADWLLSQ-SEGIIALTGGSGGPINLALAEDKKEWAIERLMDLKRIFGDRLYIELQ 194

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  YDR  E++++ LAY H++PLVATN + FL+++ YEAHD LMAVA   VVS  +R R
Sbjct: 195  RHGSYDRKVEAELIDLAYVHQIPLVATNEAFFLNKKGYEAHDALMAVAEGQVVSNPNRKR 254

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD-DIQKE 306
            VTPDHYLK++ EMV++FSDLPEALEN+VEIA RC     + +PILPRF E+  D +   E
Sbjct: 255  VTPDHYLKSQDEMVTLFSDLPEALENSVEIALRCHAFTPMRSPILPRFTERSVDSNAALE 314

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E+ EL N+A  GL++RL    +A+GY   DY QRLD+E+ VI RM+FSGYFLIV+DFI+W
Sbjct: 315  EDKELINQAKDGLKIRLETIGLAEGYTLADYEQRLDYEIAVITRMQFSGYFLIVSDFIKW 374

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQDR
Sbjct: 375  AKLHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRISMPDFDIDFCQDR 434

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI YVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QVD L KL+   P + 
Sbjct: 435  REEVIHYVQKKYGCDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVSATPGNN 494

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            + L QAI D+ +F E    +P + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVPM
Sbjct: 495  IELAQAIKDEPKFAEEAKKEPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVPM 554

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++GVK+DLS I  +D
Sbjct: 555  YRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARKGVKIDLSCISLND 614

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             ETY +L    T+G+FQ+ES GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN RK
Sbjct: 615  EETYAMLARGNTVGVFQVESPGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNARK 674

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+EKI SIHP ID ++KETQGVI+YQEQVMQIAQ LSGYSL EAD+LRRAMGKKI +EM
Sbjct: 675  HGQEKITSIHPKIDHLVKETQGVIVYQEQVMQIAQELSGYSLGEADLLRRAMGKKIHKEM 734

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             KQ+ RF+SGA   GI K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK HYPV
Sbjct: 735  QKQRTRFVSGAVDRGIDKDQADMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKAHYPV 794

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EFLAASMT +M N +K+  F ++A +  IQ++ P V T    F++G+N IYYSL+AIKGV
Sbjct: 795  EFLAASMTYDMMNADKLNDFRREALRLEIQVIAPCVQTSHRIFEIGENCIYYSLSAIKGV 854

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G +   HI+    +KPF  LEDFC R+D + +N+R +ESL++AGA DCFG +R  LL SL
Sbjct: 855  GDSVVDHIVACRGNKPFKDLEDFCGRIDPRVINKRAMESLIYAGAFDCFGIAREVLLASL 914

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            + +   A  +  N ++   +IF    G     I L + +  + + +  +E +V+GFYFS 
Sbjct: 915  ETLNARAIRIFDNNSSGQTDIFGMVDGPKEPFI-LSQATPWSLAEKLHHEFQVIGFYFSA 973

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            HPLD Y+ IL K  ++ +      ++G     RLA  VV+KQ +KT+ G +IG + FS+ 
Sbjct: 974  HPLDEYQTILAKKRVQTWNNFSNAVKGGATAARLAGTVVTKQIRKTKSGKKIGIIQFSDT 1033

Query: 1024 AKEYEANFF 1032
            + +YE   F
Sbjct: 1034 SGQYETVMF 1042


>gi|134300158|ref|YP_001113654.1| DNA polymerase III DnaE [Desulfotomaculum reducens MI-1]
 gi|134052858|gb|ABO50829.1| DNA polymerase III catalytic subunit, DnaE type [Desulfotomaculum
            reducens MI-1]
          Length = 1225

 Score = 1142 bits (2955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/1048 (38%), Positives = 615/1048 (58%), Gaps = 44/1048 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA  +N +  +       ++AITD   +F  ++F +     G++PI
Sbjct: 12   FVHLHVHTEYSLLDGASRINQMAKQAKESGMNSLAITDHGCMFGVVDFYKVCHKEGVKPI 71

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +  +  +  T +          +VLL    EGY+ L++LVS  Y         R
Sbjct: 72   LGCEVYVAPRRRIDRTPK---LDDQPNHLVLLAENQEGYKNLLKLVSLGYTEG-FYYKPR 127

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            +    LQ    +GLI L+   +G +      +  + A +    +  +F  D  ++ LQ H
Sbjct: 128  VDKELLQRYH-KGLIALSACLAGEVADKILGSQPEKARQAAREYVDIFGKDNFFLELQDH 186

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     +++++A   ++PLVATN+  +L  E  E  DVL+ +     ++   R + 
Sbjct: 187  GYQEQRTVNRELLKIAKELQIPLVATNDVHYLKREHAEIQDVLLCIQTGKSINTPGRMKF 246

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + + YLK+  EM  +F+++P+AL NT+ IA RC   L+     LP F   E    +   
Sbjct: 247  ESQEMYLKSPHEMNLLFAEIPDALSNTLRIAERCQVDLEFGKYHLPYFTVPE----ESSP 302

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR K + G   R        G+ +   ++RL++ELNVI +M +  YFLIV DFI +A
Sbjct: 303  AQYLREKCLEGAIKRY-------GHCSGPVQERLEYELNVIGKMGYDEYFLIVWDFIHYA 355

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I VGPGRGS AGS+ +YAL IT+IDPL++ LLFERFLNP+R+SMPD DIDF  +RR
Sbjct: 356  RQKGIAVGPGRGSAAGSIVSYALGITNIDPLKYGLLFERFLNPERISMPDIDIDFDYERR 415

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI Y+  KYG +RVAQIITFG++ A+AA+RDVGRAL MPY  VDR+ KL+P +    +
Sbjct: 416  GEVIEYIVQKYGTDRVAQIITFGTMAARAAIRDVGRALDMPYGDVDRVAKLVPTELNITI 475

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+      + A   DP V RL++ +  LEG+ RHASTHAAG+VI   PL + +P+ +
Sbjct: 476  -AKALTSSPDLKAAYDQDPEVKRLVDTAAALEGMPRHASTHAAGVVISREPLVEYLPLSK 534

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                 L  TQF M  +E+ GL+K D LGL+ LT++ ++++ + Q +  K+D++ IP DD 
Sbjct: 535  -TSDGLVTTQFPMTTVEELGLLKMDLLGLRNLTVISETVNLIEQIKETKLDINTIPLDDQ 593

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
             T+ +LT    +G+FQLESSGMR  L  ++P+  EDI+ALV+LYRPGP+ + +V  +  R
Sbjct: 594  ATFDMLTRGEGVGVFQLESSGMRNILRELKPNAFEDIVALVALYRPGPLGSGMVEDFIQR 653

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+ K+   HP ++P+LKET GVI+YQEQVM IA++++GYSL +AD LR+AMGKKI + 
Sbjct: 654  KHGQNKVDYFHPDLEPILKETYGVILYQEQVMMIARIMAGYSLGQADALRKAMGKKIAKI 713

Query: 725  MDKQKERFISGA----------------SKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            M   ++ FI+G+                   G S+ +A  +F+L+  FA YGFNKSH+AA
Sbjct: 714  MGMHRDWFINGSTLDDKGKPLKNPIPGAVARGYSRQLAEKMFDLMEYFAGYGFNKSHSAA 773

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQTA++K +YPVE++AA +T   DN +K+  +  + R+  IQ++PP +N    +F
Sbjct: 774  YALVSYQTAYLKANYPVEYMAALLTSVRDNTDKVVLYIDECRRMGIQVLPPDINLSRENF 833

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               +  I + +AA+K VG    + I++      PF    D C R+D++  NRRVLESL+ 
Sbjct: 834  TAANGAIRFGMAAVKNVGWGAVQEIIQIREKKGPFTGFYDLCGRLDTRIANRRVLESLIK 893

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSV 945
            AGALD FGY R QLL  LD   ++A   +++R     ++F     + +   ++ L     
Sbjct: 894  AGALDAFGY-RSQLLAGLDTGLEHAARSQRDREQGQVSLFDLMSESPAQVMELKLPHVPR 952

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
              S  + E E+  LG Y SGHPL  +  +L ++ ++          GNN+ +A ++ + +
Sbjct: 953  LTSRQQLEMEKEALGLYISGHPLSEFGWLLDQLEVQRVVHLAELPDGNNLLVAGIISTIK 1012

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  +RKG  + ++T  +     E   FP
Sbjct: 1013 RITSRKGDPMAFLTLEDLTGSCEVVVFP 1040


>gi|260463915|ref|ZP_05812111.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum
            WSM2075]
 gi|259030290|gb|EEW31570.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum
            WSM2075]
          Length = 1175

 Score = 1142 bits (2953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 589/1030 (57%), Positives = 754/1030 (73%), Gaps = 8/1030 (0%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VHS+YSLLEGAL +  I+     D+ PAIA+TDTNNLF ALEF+QKA   GIQP
Sbjct: 28   PFVHLRVHSAYSLLEGALQIGKIVGHAVKDEAPAIAVTDTNNLFGALEFAQKAVKDGIQP 87

Query: 70   IIGCQLDIDM-QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIGCQ+ +    +N       +   P +  +VLL +T  GY  L+ LVS +YL     ++
Sbjct: 88   IIGCQVALAFSGENSDGQRDRRRQGPEMRPVVLLAATEAGYSNLVRLVSGVYLETPPGEA 147

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            V +    L    T+GLI L+GG  GPI  A   +   +AE RLLT K LFGDRLYV L R
Sbjct: 148  VHLTTETLA-GQTDGLICLSGGPRGPIGNALKEDRRDLAETRLLTLKTLFGDRLYVELDR 206

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              GYDR  E   ++LAY HELPLVATN + F S +DYEAHD L+A+A  +VV+   R R+
Sbjct: 207  VAGYDRVIEHSTIELAYAHELPLVATNEAFFSSRDDYEAHDALIAIAEGSVVAVDTRRRL 266

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +PD++L+++++M  +F+DLPEA++NT+EIA RCS+  +  +PILPRF   +  D    E+
Sbjct: 267  SPDNFLRSQADMAKLFADLPEAIDNTIEIALRCSYYPKTRSPILPRFTGGDTTDKDAAEK 326

Query: 309  NE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E   L  +A  GL+ RLA      GY  + YR+RL+FEL +I +MKF GYFLIVADFI+
Sbjct: 327  AEAEELARQAREGLDARLALHGPTPGYTVEQYRERLEFELGIIEKMKFPGYFLIVADFIK 386

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK   IPVGPGRGSGAGS+ AY+ TITDIDPLRFSLLFERFLNPDR+SMPDFDIDFCQD
Sbjct: 387  WAKAQGIPVGPGRGSGAGSLVAYSTTITDIDPLRFSLLFERFLNPDRVSMPDFDIDFCQD 446

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVIRYVQ KYG ++V QIITFG+LQA+A LRDVGR LQMPY QVD+L K++P +PA+
Sbjct: 447  RREEVIRYVQQKYGRDQVGQIITFGTLQARAVLRDVGRVLQMPYGQVDKLSKMVPQNPAN 506

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            PV L  AIA++ RF E    +P V  LL+++QKLEGLYRHASTHAAGIVIGDRPLS+LVP
Sbjct: 507  PVKLADAIANEPRFAEEAEKEPIVQTLLDMAQKLEGLYRHASTHAAGIVIGDRPLSELVP 566

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++  + +RG+ +DL+ IP D
Sbjct: 567  MYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLETAVKLIRRRGIDIDLATIPLD 626

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY +L+    +G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN R
Sbjct: 627  DPDTYSMLSRGEVVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPTYNAR 686

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+E++ SIHP ID ++KETQGVI+YQEQVMQIAQ LSGYSL EAD+LRRAMGKKI+ E
Sbjct: 687  KHGEEEMASIHPKIDHLVKETQGVIVYQEQVMQIAQELSGYSLGEADLLRRAMGKKIRAE 746

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MDKQ+ERF+SGA + G++K  A  IF+LLAKFADYGFNKSHAAAYAV+SYQTA++K HYP
Sbjct: 747  MDKQRERFVSGAVERGVAKPQADFIFDLLAKFADYGFNKSHAAAYAVVSYQTAYLKAHYP 806

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMTL+M N +K+  F QDA +  I+++ PSV T    F+VG+NRIYYS+AA+KG
Sbjct: 807  VEFLAASMTLDMGNTDKLADFRQDALRLGIEVLAPSVMTSFRAFEVGENRIYYSMAALKG 866

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG     HI+    +KPF +L DFC RVD K + +RV ESL+ AGALDCFG+ R  +L  
Sbjct: 867  VGDAAVEHIVAVRGEKPFKNLADFCERVDPKIVGKRVFESLIMAGALDCFGHDRAAMLAG 926

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            ++ +   A   ++N  +   +IF    G  S  + L       ++ R   E +V+GFY S
Sbjct: 927  VERMMGLASLAQQNAVSGQADIFGASLGAQSQALNLPATDPWLAADRLHREFQVVGFYLS 986

Query: 965  GHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPLD YK  L+KM ++ + E S A  RG    RLA  V SKQ++KTR G+++G V FS+
Sbjct: 987  AHPLDEYKAALQKMRVQNWAEFSAAVKRGATAGRLAGTVTSKQERKTRTGNKMGVVAFSD 1046

Query: 1023 PAKEYEANFF 1032
             + +YEA  F
Sbjct: 1047 TSGQYEAVLF 1056


>gi|110633608|ref|YP_673816.1| DNA polymerase III subunit alpha [Mesorhizobium sp. BNC1]
 gi|110284592|gb|ABG62651.1| DNA polymerase III, alpha subunit [Chelativorans sp. BNC1]
          Length = 1172

 Score = 1142 bits (2953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 588/1031 (57%), Positives = 763/1031 (74%), Gaps = 10/1031 (0%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F+HL+VHS+YSLLEGAL L  I+     D+ PAIA  DTNNLF ALEF+QKA   GIQP
Sbjct: 25   NFIHLRVHSAYSLLEGALPLGKIIGHALKDEAPAIATADTNNLFGALEFAQKAVKDGIQP 84

Query: 70   IIGCQLDIDMQDNLKMTNQG--KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IIGCQLD+   D      +   +  F     +VL+ +T  GY  L+ L+SR YL ++  +
Sbjct: 85   IIGCQLDVAFDDAFAEARRAASRKSFADYDPLVLIAATEAGYANLVRLMSRAYLDNEAGE 144

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WLQE  +EG+I LTGG  GPI      + +++AE RLL  ++ +GDRLYV L+
Sbjct: 145  PPHVAADWLQE-HSEGIICLTGGPRGPIGAPLKADRAELAEARLLLLRETYGDRLYVELE 203

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R +GYDR  E+  V LAY H+LPLVATN + F + +D++AHD L+A+A  +V++  DR R
Sbjct: 204  RLQGYDRNLEAAAVNLAYRHDLPLVATNEAFFPTRDDFDAHDALIAIAEGSVIASDDRRR 263

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD---IQ 304
            +TPD+YLK ++EM ++F+DLPEAL+NT+E+ARRCS+  +   PILPRF   E  D     
Sbjct: 264  LTPDNYLKTQAEMAALFADLPEALDNTLEVARRCSYYPKTRKPILPRFTGDEAGDEAAAL 323

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + E +ELR +A  GL+ RLA   IA+G+  ++Y  RL++EL VI RMKF GYFLIVADFI
Sbjct: 324  QAEADELRRQAREGLDKRLAIQGIAEGHSEEEYAARLEYELGVIERMKFPGYFLIVADFI 383

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK ++IPVGPGRGSGAGS+ AYALTITDIDPLRFSLLFERFLNPDR+SMPDFDIDFCQ
Sbjct: 384  KWAKAHDIPVGPGRGSGAGSLVAYALTITDIDPLRFSLLFERFLNPDRVSMPDFDIDFCQ 443

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVIRYVQ KYG ++V QIITFG+LQA+A LRDVGR LQMPY QVDRLCK++P++PA
Sbjct: 444  DRREEVIRYVQQKYGRDQVGQIITFGTLQARAVLRDVGRVLQMPYGQVDRLCKMVPSNPA 503

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +P  L +AI D+ RF E    +P V  LLEI+QKLEGLYRHASTHAAGIVIGDRPLS+LV
Sbjct: 504  NPTPLGKAIEDEPRFAEEVEKEPIVGTLLEIAQKLEGLYRHASTHAAGIVIGDRPLSELV 563

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+K++  + +RG+++DLS IP 
Sbjct: 564  PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLEKAVHLIRRRGIEIDLSKIPL 623

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  YN 
Sbjct: 624  DDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDRVEDIIALVALYRPGPMENIPTYNA 683

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+E++ SIHP ID ++KETQGVI+YQEQVMQIAQ L+GY+L EAD+LRRAMGKKI+ 
Sbjct: 684  RKHGEEEMASIHPKIDHLVKETQGVIVYQEQVMQIAQELAGYTLGEADLLRRAMGKKIRA 743

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMDKQ+ RF+ GA + G++K  A  IF+LLAKFADYGFNKSHAAAYAV+SYQTA++K HY
Sbjct: 744  EMDKQRVRFVEGAVERGVTKQQADFIFDLLAKFADYGFNKSHAAAYAVVSYQTAYLKAHY 803

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMT +M N +K+  F +DA +  I+++PPSV T   DF+VG+NRI+YSLAAIK
Sbjct: 804  PVEFLAASMTYDMANTDKLNDFRRDAIRLGIEVVPPSVLTSYRDFEVGENRIFYSLAAIK 863

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            G G     HI+    +KPF+S+EDFC+RVD K + +RVLESL+ AGA DCFG  R  L  
Sbjct: 864  GAGDAAVEHIVAKRKEKPFESIEDFCARVDPKIVGKRVLESLICAGAFDCFGLDRAALFA 923

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             +D +   A    ++      +IF         K+ L   +   ++ +   E +V+G Y 
Sbjct: 924  GVDRLMGMASRAAEDAAIGQADIFG-SAAIEPQKLQLPATAPWLAAEKLHREFQVVGCYL 982

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATI-RGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            S HPLD Y P L K+ ++ + +  A + RG    RLA  V +KQ++KTR G+++G V FS
Sbjct: 983  SAHPLDDYLPTLEKLRVQSWADFQAAVKRGATAGRLAGTVTAKQERKTRTGNKMGIVQFS 1042

Query: 1022 EPAKEYEANFF 1032
            +   +YEA  F
Sbjct: 1043 DATGQYEAVLF 1053


>gi|260892340|ref|YP_003238437.1| DNA polymerase III, alpha subunit [Ammonifex degensii KC4]
 gi|260864481|gb|ACX51587.1| DNA polymerase III, alpha subunit [Ammonifex degensii KC4]
          Length = 1139

 Score = 1141 bits (2952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1035 (39%), Positives = 599/1035 (57%), Gaps = 28/1035 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL+GA  + +++ +     Q A+AITD   ++  ++F +     GI+P
Sbjct: 2    DFVHLHLHTEYSLLDGAARIKDVVKRAKELGQNALAITDHGVMYGVVDFYKACQEVGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +  +    MT++          +VLL    EGY+ LIELVSR +L        
Sbjct: 62   ILGCEVYVAPRG---MTDRTPKVDDNPYHLVLLAENEEGYRNLIELVSRAFLEG-FYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L +   +GLI L+   +G +         + AE+    ++ +F  D  ++ LQ 
Sbjct: 118  RVDKYLLAQKA-KGLIALSACLAGEVAAHLLAGDFKKAEEAAGEYRDIFGKDNFFLELQD 176

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++      +++LA   ++PLVATN+  ++   D E  D+L+ +     V   DR R
Sbjct: 177  HGLPEQKPVNEGLIKLASRLDIPLVATNDVHYVERADAEVQDLLLCIQTGKSVGDPDRLR 236

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  YLK+  EM  +F D P+AL  TVEIA RC   L      LP F   E       
Sbjct: 237  FGSDQFYLKSALEMARLFPDHPDALRATVEIASRCEVKLSFGEYHLPEFPVPEG----HT 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR    AG + R             +  +RL +EL VI RM +  YFLIV D I +
Sbjct: 293  PASYLRELCYAGAKKRYGD------PLPPEVEERLAYELQVIERMGYPPYFLIVWDVIHF 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++N I VGPGRGS AGS+ AY L IT+IDPL++ LLFERFLNP+R+S+PD D DFC + 
Sbjct: 347  ARRNGIMVGPGRGSAAGSLVAYCLGITNIDPLKYGLLFERFLNPERVSLPDIDTDFCFEM 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD+V+ YV  +YG +RVAQI TF  L A+AA+RD GRAL M Y++VDR+ +L+P +P   
Sbjct: 407  RDKVLEYVVRRYGADRVAQIATFAQLSARAAIRDAGRALGMSYAEVDRVARLVPGEPGMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            V  +A+ +    +E    + SV +LL+++ KLEG+ RHASTHAAG+VI   PL +LVP++
Sbjct: 467  V-ARALEESPELKELYEKEASVKKLLDVAAKLEGIPRHASTHAAGVVITPEPLIRLVPLH 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            R +      TQF  + +E+ GL+K D LGL+TLT+++ +L  + +RGVK+DL  IP DD 
Sbjct: 526  R-MPDGTVATQFTKEGVEELGLLKMDLLGLRTLTVIRDTLRHVNRRGVKLDLEKIPLDDP 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
             T+ LL    T+G+FQLESSGMR  L  +QP C ED+IALV+LYRPGP+ + +V  +  R
Sbjct: 585  ATFELLCRGDTIGVFQLESSGMRALLRSLQPSCFEDLIALVALYRPGPLGSGMVDDFIKR 644

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G   I   HP ++P+L+ET GVI+YQEQVMQIA  L+G+SL EAD+LRRAMGKK  EE
Sbjct: 645  KHGLLPIEYPHPWLEPILRETYGVIVYQEQVMQIASRLAGFSLGEADLLRRAMGKKKPEE 704

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +   + RF+ G+ + G+ + +A  IF+ +  FA YGFNKSH+AAYA+++YQTA++K +YP
Sbjct: 705  LAALRSRFVKGSVERGVDERLAEEIFDRMEYFAGYGFNKSHSAAYALVAYQTAYLKANYP 764

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
            VE++AA +T   D  EK+  + ++ R+  I+I PP +N    DF       I + LAA+K
Sbjct: 765  VEYMAALLTSVRDRTEKVALYVEECRRLGIKIFPPDINESERDFSPTPDGGIRFGLAAVK 824

Query: 844  GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      I++A  +  PF    DFC+RV  + LNR+VLESL  AGA    G++R ++L
Sbjct: 825  NVGEGAVEAILQARREGGPFRDFADFCARVGGRALNRKVLESLAKAGAFASLGHTRKEIL 884

Query: 903  QSLDNIQKYAQWVEKNRTNK-HENIF---AHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
            +S+D   K A   +  +       +F       G +  K                 E+ +
Sbjct: 885  ESIDEGLKIANRAKAKKQQGIQICLFQNMEDFGGGYRLKFNRPNGEEFPRRELLRMEKEL 944

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG Y SGHPL  Y+ +LR +      +         +++  M+V  ++ +TR+G  +  V
Sbjct: 945  LGLYISGHPLAEYRDLLRLLTDVQVADLAEMEEDAEVKVGGMIVGMKRLRTRRGEPMAAV 1004

Query: 1019 TFSEPAKEYEANFFP 1033
               +     EA  FP
Sbjct: 1005 YLEDLTGVVEAVLFP 1019


>gi|92117240|ref|YP_576969.1| DNA polymerase III subunit alpha [Nitrobacter hamburgensis X14]
 gi|91800134|gb|ABE62509.1| DNA polymerase III, alpha subunit [Nitrobacter hamburgensis X14]
          Length = 1168

 Score = 1140 bits (2949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 530/1040 (50%), Positives = 706/1040 (67%), Gaps = 15/1040 (1%)

Query: 1    LTQYLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
            ++Q L  +   FVHL VHS+YSLL+G++ +  + +   AD QPA+A+TDT+N+F ALEFS
Sbjct: 1    MSQKLAAANAGFVHLHVHSAYSLLKGSIKIQKLAELAKADHQPALALTDTDNMFGALEFS 60

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
             K    GIQPI+GC+L +D  D     +           IVLL +   GY+ L+ L SR 
Sbjct: 61   DKVAGYGIQPIVGCELAVDFDD----QDPNARSALPFARIVLLATREAGYRNLMRLNSRA 116

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +L     Q+  I   WL++   EGLI LTGG  GP+  AF  + S +A  R      +FG
Sbjct: 117  FLESALHQTPHIKSGWLRD-ENEGLIALTGGPDGPVALAFNADHSALAIARCDQLAGVFG 175

Query: 180  DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            DRLYV LQRH    +R  E  ++ LAY   LPLVATN   F + +DYEAHD L+ +A   
Sbjct: 176  DRLYVELQRHGLDKERRVEGALIDLAYAKGLPLVATNEPYFAASDDYEAHDALLCIAGGR 235

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +V++ DR ++TPDH  K R+EM  +F+D+PEAL +T+EIA RC+F      PILP F   
Sbjct: 236  LVAETDRDQLTPDHRFKTRAEMAVLFADIPEALSSTIEIAERCAFRPLTRKPILPHFAVG 295

Query: 299  ECD---DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                  D + +E  ELR +A  GL  RLA   +++G    DY  RL FEL+VI RM ++G
Sbjct: 296  AGANAADAKSDEVAELRRQAEEGLANRLAVHGLSQGMTEDDYSARLSFELDVITRMNYAG 355

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI+ AK   IPVGPGRGSGAGS+ AY LTITD+DP+RF LLFERFLNP+R+SM
Sbjct: 356  YFLIVADFIKHAKSEGIPVGPGRGSGAGSLVAYVLTITDLDPIRFGLLFERFLNPERVSM 415

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ+RR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L
Sbjct: 416  PDFDIDFCQERRGEVIDYVQKRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKL 475

Query: 476  CKLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KL+P +PA P++L A IA + + +  R  DP V R  +I+Q+LEGL RHASTHAAGIVI
Sbjct: 476  TKLVPQNPAAPITLAAAIASEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVI 535

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
            GDRPLS+LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QR V
Sbjct: 536  GDRPLSELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRNV 595

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +DL+ +P DD E+Y +LT    +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP
Sbjct: 596  HIDLATLPLDDAESYQMLTRGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGP 655

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + NI  Y  RK+G+E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LR
Sbjct: 656  MANIPTYCARKHGEEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLR 715

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKKI+ EM+KQ   F++G+ KNG+ K  A  IFELLAKFADYGFNKSHAAAYA++SY
Sbjct: 716  RAMGKKIRAEMEKQHAIFVAGSVKNGVPKGQAETIFELLAKFADYGFNKSHAAAYALVSY 775

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA+MK HYP+EFLAASMTL+M N +K+ +F  +A++  I++  PS+N     F+V    
Sbjct: 776  QTAYMKAHYPIEFLAASMTLDMSNTDKLSEFRSEAQRLEIKVEAPSINRSGATFEVSGGV 835

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I Y+LAA+KGVG      I+EA  +  F SL DF +RV  + +N+RV+ESL  AGA D F
Sbjct: 836  ICYALAALKGVGAQAVEQIVEARKNGLFTSLADFAARVPPRAVNKRVIESLAAAGAFDAF 895

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R ++    + I    Q   +       ++F       +  I L +      S R + 
Sbjct: 896  EPNRARVFAGAEAILAACQRSHEAAMLGQNDMFGGMAD--APAIMLPQAEPWLPSDRLKR 953

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAMVVSKQQKKTRKG 1012
            E   +GF+ SGHPLD Y   L+++ ++ + E    ++ G    R+AA VVS+ +++T+ G
Sbjct: 954  EYDAVGFFLSGHPLDDYATALKRLRVQSWAEFSRAVKTGATAGRVAATVVSRMERRTKTG 1013

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +++G +  S+P   +EA  F
Sbjct: 1014 NKMGIIGLSDPTGHFEAVLF 1033


>gi|225180853|ref|ZP_03734301.1| DNA polymerase III, alpha subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225168334|gb|EEG77137.1| DNA polymerase III, alpha subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 1144

 Score = 1140 bits (2949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1039 (39%), Positives = 603/1039 (58%), Gaps = 30/1039 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S +FVHL VH+ YSLL+GA  + N + + A    PA+AITD   ++  ++F + A  AGI
Sbjct: 3    SSNFVHLHVHTEYSLLDGASKIKNTVARAAELDMPALAITDHGVMYGVIDFYKAAKDAGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +P+IGC++ +  +      ++          +VLL     GY  L+ELVSR +       
Sbjct: 63   KPVIGCEVYVAPRTRH---DRDSRRDSKQHHLVLLAQDQTGYANLMELVSRGFSEG-FYY 118

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
              R+    LQ    +GL +L+   +G I  A      + A K +  +K+ F  +  ++ L
Sbjct: 119  KPRVDHELLQRY-NKGLTVLSACLAGEIPVALLEGRQEDARKLVSFYKETFGSENFFLEL 177

Query: 187  QRHRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++   S  ++ LA   + P+V +N+  +   ED  AHD L+ +     +  ++R
Sbjct: 178  QDHGLQEQKELSPLLIDLAKDTQTPMVVSNDLHYTHREDAHAHDALLCIQTGKTLDDENR 237

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R + +  YLK   EM S++ DLPE L+NTV IA  C+         LP +      D  
Sbjct: 238  MRFSTEEFYLKTAEEMGSLYPDLPELLDNTVHIAENCNVDFDFSTTYLPGYEVPPAHD-- 295

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              E + LR   V G + R  +            ++RLD+EL+VIA+M +  YFLI  DF+
Sbjct: 296  --ERSYLRELCVQGTKERYGEEL------PPHVQERLDYELSVIAQMGYDSYFLITWDFV 347

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A +N I VGPGRGS AGS+ AYAL IT+IDPL++ LLFERFLNP+R++MPD DIDFC 
Sbjct: 348  NYAHENGILVGPGRGSAAGSLVAYALGITNIDPLKYGLLFERFLNPERVTMPDIDIDFCY 407

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + R++VI YV  KYG E VAQIITFG++ A+AA+RDVGR L +PY+ VDR+ KLIP +  
Sbjct: 408  ENREKVIDYVVEKYGEECVAQIITFGTMAARAAVRDVGRVLNVPYADVDRIAKLIPAELN 467

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +    +      +E    D  + +LL++S  +EGL RHASTHAAG+VI   PL   VP
Sbjct: 468  ISI-ADGLEKSPDLKELYDKDEKIRQLLDLSMAVEGLPRHASTHAAGVVISKDPLVNYVP 526

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            + +     + VTQF M  +E+ GL+K DFLGL+TLT++ +++  + +  GV+VDL+ +P 
Sbjct: 527  LQKAGEDGM-VTQFPMGTLEELGLLKMDFLGLRTLTIMGEAVRLIKKSTGVEVDLNELPL 585

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  T+H+L+   T GIFQLES GMR  L  M+PD  EDIIA+V+LYRPGP++ I  +  
Sbjct: 586  DDKNTFHMLSQGDTSGIFQLESGGMRGILREMKPDVFEDIIAVVALYRPGPMEQIPTFIQ 645

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             K+G   I  +H  ++P+LKET G+++YQEQ+MQ+A  ++G+SL E+D+LRRA+GKK  E
Sbjct: 646  SKHGHIPIKYLHSDLEPILKETYGIMVYQEQIMQVASAMAGFSLGESDLLRRAIGKKKLE 705

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +++Q+E F++G    G  K +A  +++L+ KFA YGFNKSHAAAYA+++YQTA++K +Y
Sbjct: 706  VLNQQRELFVNGCVAKGHKKEMANELYDLIVKFASYGFNKSHAAAYALVAYQTAYLKANY 765

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAI 842
            P +F+AA +T  M   EK+  +  + +Q  I ++PP VN    +F V D + I Y +AA+
Sbjct: 766  PTQFMAAQLTGVMGTTEKVAGYIANCKQMGISVLPPDVNLSEKNFTVTDAKVIRYGMAAV 825

Query: 843  KGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K VG      I+ A  +   F SL DFC+RVD +  N++V+ESL+ AGA DC G +R QL
Sbjct: 826  KNVGLGAIESIIAARKEQGDFTSLRDFCARVDLRSCNKKVMESLIKAGAFDCLGANRNQL 885

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD------KITLEKFSVENSSVRFENE 955
            L  LD     AQ + K R N    +F   +    D      +  L          R   E
Sbjct: 886  LAILDETVSAAQTMHKERQNGQMCMFEVVEEDEEDCQWVNLQDDLPDIPAPLPRERLNME 945

Query: 956  QRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +  LG Y +GHPL+ Y+ +L     +   +         ++ +A M+   +   T+KG  
Sbjct: 946  KDTLGLYITGHPLEEYENVLNIYPDLARTDTLQKAPDNKSVVIAGMINGLKPIITKKGKP 1005

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + + T  + A   E   FP
Sbjct: 1006 MAFFTLEDLAGGLEVVVFP 1024


>gi|302343800|ref|YP_003808329.1| DNA polymerase III, subunit alpha [Desulfarculus baarsii DSM 2075]
 gi|301640413|gb|ADK85735.1| DNA polymerase III, alpha subunit [Desulfarculus baarsii DSM 2075]
          Length = 1152

 Score = 1140 bits (2948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1033 (41%), Positives = 637/1033 (61%), Gaps = 17/1033 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +PSFVHL  H++YSLL+GA+ L  ++ + A     A+A+TD  N+F AL F Q+A  AG+
Sbjct: 2    TPSFVHLHTHTAYSLLDGAIRLPELIKRTAELGMNAVAVTDHGNMFGALNFFQQAKKAGL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC++ +   D     +  +    T   +VLL    EGYQ L+ LVS  +       
Sbjct: 62   KPIIGCEVYVAPGDRRDKEH--RPGHETAFHLVLLCKNLEGYQNLVRLVSAGFTEG-FYY 118

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNL 186
              RI +  L++    GLI L+    G +       +   A        +  G+   ++ L
Sbjct: 119  KPRIDMELLRQ-HNGGLIALSACLGGRVPHYLLRGNIDQALAAAEDMAQTMGEGNFFIEL 177

Query: 187  QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++      + ++A    L LV TN+  FL  +D+EAHD+L+ +     ++  +R
Sbjct: 178  QDHGLVEQKQVNPGLREIAQRLGLGLVVTNDCHFLRRQDHEAHDILLCIQTGKTIADAER 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              ++P+ Y K+  EM  +F D PEA+ NT++IA RC   + +     P++   E     +
Sbjct: 238  MTMSPELYFKSPEEMALLFPDCPEAMANTMDIAARCDLDIPLGQLRFPQYPLPEG----Q 293

Query: 306  EEENELRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              E++L   A  GLE RLA+  A    +    Y++RL++E++V+ +M F+GYFL+V+DFI
Sbjct: 294  SAEDQLTRMARRGLERRLAEMDARGLKFDRDFYKKRLEYEIDVLLQMGFAGYFLVVSDFI 353

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAK   IPVGPGRGS AGS+ AY++ ITD+DP+R+ L+FERFLN +R SMPD D+DFC 
Sbjct: 354  VWAKSQGIPVGPGRGSAAGSLVAYSMRITDLDPIRYGLIFERFLNIERKSMPDIDVDFCY 413

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI+YV  +YG + VAQIITFGS+ A+A +RDVGRA+ +P+  VD++ KL+P    
Sbjct: 414  NRRPEVIQYVTERYGSDHVAQIITFGSMLARAVIRDVGRAMNVPFGDVDQIAKLVPTALG 473

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  + R  +    +P V +L+ I++ LEGL RHASTHAAG+VIGD PL ++VP
Sbjct: 474  MTLD-KALEQEPRLAQRIKDEPQVAKLVRIAKSLEGLPRHASTHAAGVVIGDVPLDRVVP 532

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +YR  + +  VTQF+MK +EKAGLIKFDFLGL+TLT++  ++  + Q R    D+  I  
Sbjct: 533  LYRGSQGE-CVTQFDMKCVEKAGLIKFDFLGLRTLTVIDVAVKMIRQGRDPSFDIDAIDM 591

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD  +Y LL+   T G+FQLESSGM++ L  M+P+  ED+IALV+LYRPGP+++ +V  +
Sbjct: 592  DDKASYELLSRGDTTGVFQLESSGMKELLTKMRPEVFEDVIALVALYRPGPLESGMVDDF 651

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K+G +K+    P ++P+LKET GVI+YQEQV +IA++L+GYSL E D+LRRAMGKK+
Sbjct: 652  VACKHGAKKVSYPLPQLEPVLKETYGVIVYQEQVQEIARILAGYSLGEGDILRRAMGKKV 711

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E M  Q+ERF+SGA  NG+S+  A  IF+L+ KFA YGFNKSH+AAY +I+YQTA++K 
Sbjct: 712  PEVMAAQRERFVSGAKANGVSEKKAGEIFDLMEKFAGYGFNKSHSAAYGLIAYQTAFLKA 771

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            H+P EF+AA +T E+ N +KI     + R  N++++PP +N    +F V D+ I + LAA
Sbjct: 772  HFPHEFMAALLTSEVSNTDKIMLHIAECRDQNLKVLPPDINHSGREFTVDDDAIRFGLAA 831

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +K VG      I+EA  +KPF+ + DFC RV+  K+NRRV+ESL+  GA D  G  R Q 
Sbjct: 832  VKNVGEGAVDAIIEARQEKPFEDIFDFCERVNLAKVNRRVIESLIKCGAFDSLGAHRAQN 891

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENI-FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            + +LD+  +  Q + ++R     N+  A  +   S + T+        +     E+  LG
Sbjct: 892  MAALDDAMEQGQKLGRDRDGGQINMFAAFSEAAASARPTMPDVPPWLEADALTYEKEALG 951

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY +GHPL  +   ++++G+       A   G ++RLA +    ++K T+KG R+ +V  
Sbjct: 952  FYITGHPLGRFAEDIKRLGVLDSVTVQAAADGMSVRLAGLATEIKEKITKKGDRMAFVRL 1011

Query: 1021 SEPAKEYEANFFP 1033
             +     E   FP
Sbjct: 1012 EDLKGSLELVVFP 1024


>gi|90419565|ref|ZP_01227475.1| DNA polymerase III alpha subunit [Aurantimonas manganoxydans
            SI85-9A1]
 gi|90336502|gb|EAS50243.1| DNA polymerase III alpha subunit [Aurantimonas manganoxydans
            SI85-9A1]
          Length = 1153

 Score = 1139 bits (2946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 586/1033 (56%), Positives = 750/1033 (72%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            +  P FVHL+VHS++SLLEGAL L+ I+     D  PAI I DTNNLF ALEFS+KA  A
Sbjct: 4    DTKPKFVHLRVHSAFSLLEGALKLDQIIKFAKGDDAPAIGICDTNNLFGALEFSEKASKA 63

Query: 66   GIQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            GIQPI GCQ+D++  D       + +    ++  +VL+ +T  GY  L+E+VS  YL   
Sbjct: 64   GIQPITGCQIDVEFSDCEESRGGRRERSLSSIAPLVLIAATEAGYANLVEIVSLAYLGHA 123

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  +   WL E  +EG+I LTGG  GPI  A   + S +A  R+     +FGDRLYV
Sbjct: 124  DNPRPHVLFEWL-ETRSEGIIALTGGPLGPIGSAIAADRSDLARSRMERMAPVFGDRLYV 182

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQRH G  R  E+  +QLAY   LPLVATN   FL  +D+EAHD L+AVA + +VSQ+D
Sbjct: 183  ELQRHEGRSRKVEADTLQLAYDMALPLVATNEPFFLKADDFEAHDALIAVAGNRLVSQED 242

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R++ DH LK+++EM  +F+DLPEAL NTVEIA+RCS+  +  APILPRF   + D  +
Sbjct: 243  RRRLSRDHSLKSQNEMSVLFADLPEALHNTVEIAQRCSYRPRTRAPILPRFAGADADAAE 302

Query: 305  KEEENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             E      LR +A+ GLE RLA   +A G  A+ YR+RL+FEL++I RMKF GYFLIVAD
Sbjct: 303  AEAAEVAELRRQAIEGLEARLAAHGLAPGETAESYRERLEFELSIIERMKFPGYFLIVAD 362

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK   IPVGPGRGSGAGS+ AYALT+TD+DPLRFSLLFERFLNP+R+SMPDFDIDF
Sbjct: 363  FIKWAKAQGIPVGPGRGSGAGSLVAYALTVTDLDPLRFSLLFERFLNPERVSMPDFDIDF 422

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG E+V QIITFG+LQA+A LRDVGR L+M Y QVD+LCKL+P +
Sbjct: 423  CQDRREEVIRYVQEKYGREQVGQIITFGTLQARAVLRDVGRVLEMSYGQVDKLCKLVPQN 482

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PV+L QA+ ++ R +EAR  +  VDRL+ I+ KLEGLYRHASTHAAGIVIGDRPLSQ
Sbjct: 483  PANPVTLAQALVEEPRLQEAREKEEIVDRLISIALKLEGLYRHASTHAAGIVIGDRPLSQ 542

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+LQK+++ +A+ G  +DLS I
Sbjct: 543  LVPMYRDPRSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLQKAVELIARTGPTIDLSAI 602

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY ++T   T+G+FQ+ES GMR+AL GM+PD  EDIIALV+LYRPGP++NI  Y
Sbjct: 603  PLDDARTYEMMTRGETVGVFQVESVGMRKALIGMRPDRFEDIIALVALYRPGPMENIPTY 662

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RK+G+E+   IH  I P+LKETQGVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 663  NARKHGEEEPDFIHDKIAPILKETQGVIIYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 722

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            + EMDKQ+ RF+ GA  NG+ KT +  IF+LLAKFADYGFNKSHAAAYA+++YQTA++K 
Sbjct: 723  RAEMDKQRVRFVEGAVANGLDKTQSNMIFDLLAKFADYGFNKSHAAAYALVAYQTAYLKA 782

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            ++PVEFLAASMTL+  N EK+  F  DA +  I+I+PPSV T    F+VG+N+I+Y+LAA
Sbjct: 783  NHPVEFLAASMTLDAGNTEKLNDFRMDAMRLGIKIVPPSVQTSFRQFEVGENKIFYALAA 842

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI+    D  F SLEDFC+R+D K +N+R LE L+ AGALDCFG+ R  L
Sbjct: 843  IKGVGEQAVDHIVATRGDGSFQSLEDFCARIDPKIVNKRTLEFLIAAGALDCFGHERALL 902

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
              ++D +  YA  V + R +   ++F    G+  + + L    +  SS +   E + +GF
Sbjct: 903  CANIDLMASYALRVHEGRASGQHDMFGG-AGSEPEPLHLNPAQLWTSSEKLLREFQAIGF 961

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESV-ATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD YK  L+++ ++ + E + A  RG    +LA  V S+Q++KTR G ++G + 
Sbjct: 962  YLSAHPLDEYKTTLKRLRVQTHAEVIHAVKRGATAGKLAGTVTSRQERKTRSGGKLGIIQ 1021

Query: 1020 FSEPAKEYEANFF 1032
             S+P+ +YE   F
Sbjct: 1022 LSDPSGQYEVVLF 1034


>gi|256752386|ref|ZP_05493246.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
            CCSD1]
 gi|256748721|gb|EEU61765.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
            CCSD1]
          Length = 1101

 Score = 1139 bits (2946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1049 (37%), Positives = 603/1049 (57%), Gaps = 45/1049 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G+  + +++ K       AIAITD   ++  ++F ++A A GI+PI
Sbjct: 2    FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +    M ++          +VLL     GY+ L+++V+   +        R
Sbjct: 62   IGCEIYVAPRS---MQDREYGIDNENYHLVLLAKDMTGYKNLMKIVTVASIEG-FYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            +   +L+E  +EGLI L+   +G +         + A++  L +  +F     Y+ LQ H
Sbjct: 118  VDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLELQDH 176

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +   ++++L+    +PLVATN+  +L ++D +AH+VL+ +     +  +DR   
Sbjct: 177  GILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDEDRMSF 236

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM ++FS   EA+ENT +IA  C+   + +   LP++   E  D     
Sbjct: 237  PTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDSC--- 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LRN    GL  R           +++  +RLD+EL+VI +M +  YFLIV DFI++A
Sbjct: 294  -EYLRNLCYEGLYKRYKN-------PSKEVIERLDYELSVIEQMGYVDYFLIVWDFIKFA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N I  GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC +RR
Sbjct: 346  KDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL  PY++VD + K+IP +    +
Sbjct: 406  QEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDVIAKMIPFELGMTI 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A++ +   +     +  V +L++IS+ LEGL RHASTHAAG+VI   PL   VP+ +
Sbjct: 466  D-KALSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYVPLQK 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ +   RGV +D   + +DD 
Sbjct: 525  --NEDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVEKNRGVTIDFDSMEYDDP 582

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y L++   T G+FQLESSGM+Q +  ++P  +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 583  KVYELISKGETEGVFQLESSGMKQFMAELKPKNLEDIIAGISLYRPGPMDQIPRYLANKN 642

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E IV  HPL+ P+L  T G ++YQEQVMQI + ++GYSL  +D++RRAM KK  + M+
Sbjct: 643  HPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKMDVME 702

Query: 727  KQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI G              +NG+ +  A  +F+ +  FA+Y FNKSHAAAYAVI+Y
Sbjct: 703  QERKNFIYGIVDEEGNVIVPGALRNGLDEATANKLFDEMLDFANYAFNKSHAAAYAVIAY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEF+AA +   +DN++K+  + Q  R+  I+++PP +N     F V +++
Sbjct: 763  QTAYLKRYYPVEFMAALLNSFVDNLDKVAFYVQVCRKMGIKVLPPDINESDSYFTVVEDK 822

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L+A+K VG      I+ E   +  F S+ DF  R+   +LN++ +ESL+ AGA   
Sbjct: 823  IRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAGAFSS 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG  R QLL + D + +  +    N  N   ++F   + T               S    
Sbjct: 883  FGVRRSQLLSAYDKLMENIKKNRNNNLNGQISLFGEVEQTHGVGFEFPDLEEFPKSRLLS 942

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---------ATIRGNNIRLAAMVVSK 1004
             E+  LG Y SGHPL+ Y   + K+      +                  + +A ++ +K
Sbjct: 943  MEKETLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQEVVIAGVIATK 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + K T+  + + +VT  +     E   FP
Sbjct: 1003 KIKFTKNNNIMAFVTIEDLYGTVEVIVFP 1031


>gi|167037102|ref|YP_001664680.1| DNA polymerase III DnaE [Thermoanaerobacter pseudethanolicus ATCC
            33223]
 gi|320115517|ref|YP_004185676.1| DNA polymerase III subunit alpha [Thermoanaerobacter brockii subsp.
            finnii Ako-1]
 gi|166855936|gb|ABY94344.1| DNA polymerase III, alpha subunit [Thermoanaerobacter
            pseudethanolicus ATCC 33223]
 gi|319928608|gb|ADV79293.1| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii subsp.
            finnii Ako-1]
          Length = 1145

 Score = 1138 bits (2945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1049 (36%), Positives = 603/1049 (57%), Gaps = 45/1049 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G+  + +++ K       AIAITD   ++  ++F ++A A GI+PI
Sbjct: 2    FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +    M ++          +VLL     GY+ L+++V+   +        R
Sbjct: 62   IGCEIYVAPRS---MQDREYGIDNENYHLVLLAKDMTGYKNLMKIVTVASIEG-FYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            +   +L+E  +EGLI L+   +G +         + A++  L +  +F     Y+ LQ H
Sbjct: 118  VDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLELQDH 176

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +   ++++L+    +PLVATN+  +L ++D +AH+VL+ +     +  +DR   
Sbjct: 177  GILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDEDRMSF 236

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM ++FS   EA+ENT +IA  C+   + +   LP++   E  D     
Sbjct: 237  PTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDSC--- 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LRN    GL  R            ++  +RLD+EL+VI +M +  YFLIV DFI++A
Sbjct: 294  -EYLRNLCYEGLYKRYKN-------PGKEVIERLDYELSVIKQMGYVDYFLIVWDFIKFA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N I  GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC +RR
Sbjct: 346  KDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL  PY++VD + K+IP +    +
Sbjct: 406  QEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDTIAKMIPFELGMTI 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A++ +   +     +  V +L++IS+ LEGL RHASTHAAG+VI   PL   VP+ +
Sbjct: 466  D-KALSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYVPLQK 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + + +GV +D   + +DD 
Sbjct: 525  --NEDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVIIDFDSMGYDDL 582

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y L++   T G+FQLES GM+Q +  ++P  +EDIIA +SLYRPGP+D I  Y   +N
Sbjct: 583  KVYELISKGETEGVFQLESPGMKQFMTELKPKNLEDIIAGISLYRPGPMDQIPRYLANRN 642

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E IV  HPL+ P+L  T G ++YQEQVMQI + ++GYSL  +D++RRAM KK  + M+
Sbjct: 643  HPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKMDVME 702

Query: 727  KQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI G              +NG+ +  A  +F+ +  FA+Y FNKSHAAAYAVI+Y
Sbjct: 703  QERKNFIYGIVDEEGNVIVPGALRNGLDEVTANKLFDEMLDFANYAFNKSHAAAYAVIAY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEF+AA +   +DN++KI  + Q  ++  I+++PP +N     F V +++
Sbjct: 763  QTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVQVCKKMGIKVLPPDINESDSYFTVVEDK 822

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L+A+K VG      I+ E   +  F S+ DF  R+   +LN++ +ESL+ AGA   
Sbjct: 823  IRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAGAFSS 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG  R QLL   D + +  +    N  N   ++F   + +   +           +    
Sbjct: 883  FGVRRSQLLSVYDKLMENIKKNRNNNLNGQISLFGEVEQSHGVEFEFPDLEEFPKNRLLS 942

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI---------RGNNIRLAAMVVSK 1004
             E+  LG Y SGHPL+ Y   + K+      +   +              + +A ++ +K
Sbjct: 943  MEKETLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQEVVIAGVIATK 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + K T+  + + +VT  +     E   FP
Sbjct: 1003 KIKFTKNNNMMAFVTIEDLYGTVEVIVFP 1031


>gi|326390936|ref|ZP_08212486.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW
            200]
 gi|325992978|gb|EGD51420.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW
            200]
          Length = 1145

 Score = 1138 bits (2945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1049 (36%), Positives = 603/1049 (57%), Gaps = 45/1049 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G+  + +++ K       AIAITD   ++  ++F ++A A GI+PI
Sbjct: 2    FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +    M ++          +VLL     GY+ L+++V+   +        R
Sbjct: 62   IGCEIYVAPRS---MQDREYGIDNENYHLVLLAKDMTGYKNLMKIVTVASIEG-FYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            +   +L+E  +EGLI L+   +G +         + A++  L +  +F     Y+ LQ H
Sbjct: 118  VDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLELQDH 176

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +   ++++L+    +PLVATN+  +L ++D +AH+VL+ +     +  +DR   
Sbjct: 177  GILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDEDRMSF 236

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM ++FS   EA+ENT +IA  C+   + +   LP++   E  D     
Sbjct: 237  PTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVD----S 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LRN    GL  R            ++  +RLD+EL+VI +M +  YFLIV DFI++A
Sbjct: 293  YEYLRNLCYEGLYKRYKN-------PGKEVIERLDYELSVIKQMGYVDYFLIVWDFIKFA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N I  GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC +RR
Sbjct: 346  KDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL  PY++VD + K+IP +    +
Sbjct: 406  QEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDTIAKMIPFELGMTI 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A++ +   +     +  V +L++IS+ LEGL RHASTHAAG+VI   PL   VP+ +
Sbjct: 466  D-KALSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYVPLQK 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + + +GV +D   + +DD 
Sbjct: 525  --NEDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVIIDFDSMEYDDL 582

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y L++   T G+FQLESSGM+Q +  ++P  +EDIIA +SLYRPGP+D I  Y   +N
Sbjct: 583  KVYELISKGETEGVFQLESSGMKQFMAELKPKNLEDIIAGISLYRPGPMDQIPRYLANRN 642

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E IV  HPL+ P+L  T G ++YQEQVMQI + ++GYSL  +D++RRAM KK  + M+
Sbjct: 643  HPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKMDVME 702

Query: 727  KQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI G              +NG+ +  A  +F+ +  FA+Y FNKSHAAAYAVI+Y
Sbjct: 703  QERKNFIYGIVDEEGNVIVPGALRNGLDEATANKLFDEMLDFANYAFNKSHAAAYAVIAY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEF+AA +   +DN++KI  + Q  ++  I+++PP +N     F V +++
Sbjct: 763  QTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVQVCKKMGIKVLPPDINESDSYFTVVEDK 822

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L+A+K VG      I+ E   +  F S+ DF  R+   +LN++ +ESL+ AGA   
Sbjct: 823  IRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAGAFSS 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG  R QLL   D + +  +    N  N   ++F   + +   +           +    
Sbjct: 883  FGVRRSQLLSVYDKLMENIKKNRNNNLNGQISLFGEVEQSHGVEFEFPDLEEFPKNRLLS 942

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---------ATIRGNNIRLAAMVVSK 1004
             E+  LG Y SGHPL+ Y   + K+      +                  + +A ++ +K
Sbjct: 943  MEKETLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQEVVIAGVIATK 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + K T+  + + +VT  +     E   FP
Sbjct: 1003 KIKFTKNNNMMAFVTIEDLYGTVEVIVFP 1031


>gi|167039837|ref|YP_001662822.1| DNA polymerase III DnaE [Thermoanaerobacter sp. X514]
 gi|300915388|ref|ZP_07132702.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307724839|ref|YP_003904590.1| DNA polymerase III subunit alpha [Thermoanaerobacter sp. X513]
 gi|166854077|gb|ABY92486.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X514]
 gi|300888664|gb|EFK83812.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307581900|gb|ADN55299.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X513]
          Length = 1145

 Score = 1137 bits (2941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1049 (36%), Positives = 602/1049 (57%), Gaps = 45/1049 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G+  + +++ K       AIAITD   ++  ++F ++A A GI+PI
Sbjct: 2    FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +    M ++          +VLL     GY+ L+++V+   +        R
Sbjct: 62   IGCEIYVAPRS---MQDREYGIDNENYHLVLLAKDMTGYKNLMKIVTVASIEG-FYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            +   +L+E  +EGLI L+   +G +         + A++  L +  +F     Y+ LQ H
Sbjct: 118  VDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLELQDH 176

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +   ++++L+    +PLVATN+  +L ++D +AH+VL+ +     +  +DR   
Sbjct: 177  GILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDEDRMSF 236

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM ++FS   EA+ENT +IA  C+   + +   LP++   E  D     
Sbjct: 237  PTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDSC--- 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LRN    GL  R           +++  +RLD+EL+VI +M +  YFLIV DFI++A
Sbjct: 294  -EYLRNLCYEGLYKRYKN-------PSKEVIERLDYELSVIEQMGYVDYFLIVWDFIKFA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N I  GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC +RR
Sbjct: 346  KDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL   Y++VD + K+IP +    +
Sbjct: 406  QEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYLYAEVDVIAKMIPFELGMTI 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A++ +   +     +  V +L++IS+ LEGL RHASTHAAG+VI   PL   VP+ +
Sbjct: 466  D-KALSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYVPLQK 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ +   RGV +D   + +DD 
Sbjct: 525  --NEDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVEKNRGVTIDFDSMEYDDP 582

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y L++   T G+FQLESSGM+Q +  ++P  +EDIIA +SLYRPGP+D I  Y   +N
Sbjct: 583  KVYELISKGETEGVFQLESSGMKQFMAELKPKNLEDIIAGISLYRPGPMDQIPRYLANRN 642

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E IV  HPL+ P+L  T G ++YQEQVMQI + ++GYSL  +D++RRAM KK  + M+
Sbjct: 643  HPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKMDVME 702

Query: 727  KQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI G              +NG+ +  A  +F+ +  FA+Y FNKSHAAAYAVI+Y
Sbjct: 703  QERKNFIYGIVDEEGNVIVPGALRNGLDEATANKLFDEMLDFANYAFNKSHAAAYAVIAY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEF+AA +   +DN++K+  + Q  R+  I+++PP +N     F V +++
Sbjct: 763  QTAYLKRYYPVEFMAALLNSFVDNLDKVAFYVQVCRKMGIKVLPPDINESDSYFTVVEDK 822

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L+A+K VG      I+ E   +  F S+ DF  R+   +LN++ +ESL+ AGA   
Sbjct: 823  IRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAGAFSS 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG  R QLL + D + +  +    N  N   ++F   + T               S    
Sbjct: 883  FGVRRSQLLSAYDKLMENIKKNRNNNLNGQISLFGEVEQTHGVGFEFPDLEEFPKSRLLS 942

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---------ATIRGNNIRLAAMVVSK 1004
             E+  LG Y SGHPL+ Y   + K+      +                  + +A ++ +K
Sbjct: 943  MEKETLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQEVVIAGVIATK 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + K T+  + + +VT  +     E   FP
Sbjct: 1003 KIKFTKNNNIMAFVTIEDLYGTVEVIVFP 1031


>gi|95930421|ref|ZP_01313157.1| DNA polymerase III, alpha subunit [Desulfuromonas acetoxidans DSM
            684]
 gi|95133461|gb|EAT15124.1| DNA polymerase III, alpha subunit [Desulfuromonas acetoxidans DSM
            684]
          Length = 1158

 Score = 1137 bits (2940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/1043 (41%), Positives = 624/1043 (59%), Gaps = 23/1043 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +E + +FVHL +HS YSLL+GA+ + N+++++   + PA+AITD  N+F A+EF  KA A
Sbjct: 1    MEHA-NFVHLHLHSQYSLLDGAIKIPNLIERVKEYKMPAVAITDHGNMFGAMEFYTKATA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIGC++ +      + +N  +        +VLL     GY+ L  LVS  Y  + 
Sbjct: 60   AGVKPIIGCEVYVAPGRRTEKSN-ARGSSEASYHLVLLCQNKIGYRNLCYLVSTAY-REG 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183
                 RI    L E   EGLI ++    G I           A  R     ++F D R Y
Sbjct: 118  FYYKPRIDWDLLTEY-NEGLIAMSACLGGEIPTLINLGRPDDALARAEQMAQVFDDDRFY 176

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ +   ++    + ++ ++    LPLVATN+  +L  ED  AH+VL+ +     +  
Sbjct: 177  LELQENGIPEQATANTGLIDISGKLGLPLVATNDCHYLRREDAYAHEVLLCIQTGKTMDD 236

Query: 243  KDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            + R R   D  Y++   EM  +FS +P+AL+NTVEIA+RC+          P++ +    
Sbjct: 237  EKRMRFANDGFYVRTPDEMRELFSHVPQALDNTVEIAQRCNLDFDFDTYHFPQYEKP--- 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               K  +  L   A  GLE RL               Q Y+ RL+ EL  I  M F GYF
Sbjct: 294  -ADKTLDEVLEEMARDGLEDRLKMIRSLNPDLSAEEEQVYQDRLERELKTIRDMGFPGYF 352

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            +IVADFI WAK ++IPVGPGRGS AGS+ A+A+ ITDIDP+ + LLFERFLNP+R+SMPD
Sbjct: 353  IIVADFINWAKDHDIPVGPGRGSAAGSLVAFAIRITDIDPIPYDLLFERFLNPERISMPD 412

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DFC   R++VI+YVQ +YG   VAQIITFG+L AK  ++DVGRAL MPY +VD+L K
Sbjct: 413  IDVDFCIYGREKVIQYVQEEYGAPNVAQIITFGTLGAKGVIKDVGRALNMPYGEVDKLSK 472

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+P      +   A+  + R +E   +D  V  LL ++  LEGL RHASTHAAG+V+   
Sbjct: 473  LVPAVLNITLK-DALQQEPRIQEMAKSDVRVKELLNVALSLEGLTRHASTHAAGVVVTPN 531

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKV 596
            PL+  +P+Y D +S   VTQF M ++EK GL+KFDFLGLKTLT++  +L  +   +    
Sbjct: 532  PLTDYLPLYTDQKSGGQVTQFPMSYVEKIGLVKFDFLGLKTLTVIDNALRLIHSAKNPDF 591

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL++I  DD  TY LL+   T G+FQLESSGM++ L  ++P+C EDIIA  +LYRPGP+ 
Sbjct: 592  DLNVIGDDDEATYELLSHGDTTGVFQLESSGMKELLVKLKPNCFEDIIAACALYRPGPLG 651

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +V  +  RK+G++ IV   P ++P+LK+T GVI+YQEQVM IAQ L+ YSL  AD+LR
Sbjct: 652  SGMVDDFILRKHGQKDIVYDFPQLEPILKDTYGVIVYQEQVMLIAQTLANYSLGGADLLR 711

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM+KQK  F+ GA +N +    A  +F+L+A FA YGFNKSH+AAYA+++Y
Sbjct: 712  RAMGKKKPEEMEKQKVLFLKGAKENNLDPKKAEAVFDLMAMFAAYGFNKSHSAAYALVAY 771

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TA++K HYPVEF+AA +T +M+N +K+ K   + R   I+++PP +N     F V +N 
Sbjct: 772  HTAYLKAHYPVEFMAALLTEDMENTDKVIKNIAEVRSMGIEVLPPDINASIRSFTVHENA 831

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            + + L A+KGVGT     I+     D P+DSL DFC RVD  K+N++V+ESL+  GA D 
Sbjct: 832  MRFGLGAVKGVGTAALDSIIHVREVDGPYDSLNDFCERVDLGKVNKKVVESLIKCGAFDS 891

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG---TFSDKITLEKFSVENSSV 950
             G  R Q + +L++  +  Q V++ +    E++F  E+    + S    L   +  +  +
Sbjct: 892  LGGKRAQYMDALESAMEIGQQVQREKQQGQESLFGMEEMVTRSGSSYGELPDVAEWDDKL 951

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R  NE+  LGFY +GHPL  Y   +++         V       +R+  +V  K++  T+
Sbjct: 952  RLNNEKEALGFYITGHPLSRYAEDIKRFATCDLSGLVERNDKEEVRVCGIVSGKKELVTK 1011

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
            KG R+ ++T  +     E   FP
Sbjct: 1012 KGDRMAFITLEDLTGSLEVVVFP 1034


>gi|296133826|ref|YP_003641073.1| DNA polymerase III, alpha subunit [Thermincola sp. JR]
 gi|296032404|gb|ADG83172.1| DNA polymerase III, alpha subunit [Thermincola potens JR]
          Length = 1146

 Score = 1135 bits (2937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1034 (38%), Positives = 613/1034 (59%), Gaps = 26/1034 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  F+HL VH+ YSLL+GA  + +++   A     A+A+TD  ++F  ++F +    AGI
Sbjct: 2    AADFIHLHVHTEYSLLDGAARIRDLVSAAAEKGMKALAVTDHGSMFGVIDFYKACKKAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+GC++ +  +    M ++          +VLL     GY+ L+ +VS  Y       
Sbjct: 62   KPILGCEVYVAPRS---MDDREPGRDDANYHLVLLAENETGYKNLLHIVSEAYTRG-FYY 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
              R   + L++  +EGLI L+    G I  A     S  A      ++ +F     ++ L
Sbjct: 118  KPRTDKAALRK-HSEGLIALSACLGGEIATAIVNGQSDKARAAAREYEDIFGKGNFFLEL 176

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++     ++V++     +PLV TN+  ++ + D E  DVL+ +     +   DR
Sbjct: 177  QDHGLENQRMVNMELVKIGRELNIPLVVTNDVHYVRKSDAEVQDVLLCIGTGRTMEDADR 236

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                T + YLK+  EM  +  + PEAL NTV IA RC+         LP ++  E   + 
Sbjct: 237  MEFGTSEFYLKDAREMALLAGEYPEALANTVNIAARCNVEFDFSQNYLPDYMIPEGHTV- 295

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               E+ LR   + GL+ R            ++ R+RL++EL VI  M F GYFLIV DF+
Sbjct: 296  ---ESYLRQLCLDGLKKRYPNAG-------EEVRRRLEYELQVINDMGFPGYFLIVWDFV 345

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A++  I VGPGRGS AGS+ AY L IT+IDPL++ LLFERFLNP+R++MPD DIDFC 
Sbjct: 346  RFAREKGILVGPGRGSAAGSLVAYTLGITNIDPLKYDLLFERFLNPERVTMPDIDIDFCY 405

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            ++R+EVIRYV  +YG +RVAQIITFG++ A+AA+RDVGRAL MPY++VDR+ K+IP +  
Sbjct: 406  EKREEVIRYVIERYGADRVAQIITFGTMAARAAIRDVGRALNMPYAEVDRVAKMIPGELG 465

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+      RE    +P V +L+++++ +EG+ RHASTHAAG+VIG  PL++ +P
Sbjct: 466  MTLD-KALEASPELRELYETEPKVHKLVDMARAIEGMPRHASTHAAGVVIGREPLTRYLP 524

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +YR     +  TQF  + +E+ GL+K D LGL+TLT++  +++ +      ++D+  IP 
Sbjct: 525  LYR-SSDGVVTTQFAKETVEEIGLLKMDLLGLRTLTVIGDAVNIIKHTTGDEIDIDNIPL 583

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD  TY +L     +G+FQLESSGMR  L+ ++P+ ++DIIALV+LYRPGP+ + +V  +
Sbjct: 584  DDRATYEMLGRGDAIGVFQLESSGMRAILKELKPEVLDDIIALVALYRPGPLGSGMVEDF 643

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK+G+ +I  +HP ++P+LK+T GVI+YQEQVM+IA  L+G++L EAD+LRRAMGKK 
Sbjct: 644  IRRKHGQSEIKYLHPALEPILKDTYGVILYQEQVMRIASDLAGFTLGEADLLRRAMGKKK 703

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E +   + +FI GA KN I +TIA  IF+L+  FA YGFNKSH+AAYA++SYQTA++K 
Sbjct: 704  PEVIAGLRNQFIEGARKNNIEETIAGQIFDLMEYFAGYGFNKSHSAAYALVSYQTAYLKA 763

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YPV ++AA +T    + +K+  + ++ ++  I I+PP +N   V+F V  ++I + LAA
Sbjct: 764  NYPVAYMAALLTSVAGSSDKVAVYIEECKRMGIDILPPDINESLVNFTVVGDKIRFGLAA 823

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +K VG     HI+   + K F SL DFC R + + + +RV+ESL+  GA D    +R QL
Sbjct: 824  VKNVGRQAIEHIIAVRSKKKFASLLDFCERAEHRVVTKRVIESLIKGGAFDSLTGNRRQL 883

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKG--TFSDKITLEKFSVENSSVRFENEQRVL 959
            L+ LD   ++A   +K+ +    ++F   +G  +F  ++ L              E+ +L
Sbjct: 884  LEGLDRCLEWAAKRQKDLSTGQISLFDVYEGDSSFGGEVPLPPVPDFPQHELLAMEKEML 943

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G Y SGHPL+ Y+  L +       + V       + +  ++   ++  TR+G  +  + 
Sbjct: 944  GLYISGHPLEQYRRELAEKTTATTAQLVEMQDQEEVVIGGIIAGMRKITTRRGETMLLMN 1003

Query: 1020 FSEPAKEYEANFFP 1033
              +     E   FP
Sbjct: 1004 LEDLVGSVEVIVFP 1017


>gi|289578818|ref|YP_003477445.1| DNA polymerase III subunit alpha [Thermoanaerobacter italicus Ab9]
 gi|289528531|gb|ADD02883.1| DNA polymerase III, alpha subunit [Thermoanaerobacter italicus Ab9]
          Length = 1145

 Score = 1135 bits (2936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1049 (36%), Positives = 601/1049 (57%), Gaps = 45/1049 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VHS YSLL+G+  + +++ K       AIAITD   ++  ++F ++A A GI+PI
Sbjct: 2    FAHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAHGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +    M ++          +VLL     GY+ L+++V+   +        R
Sbjct: 62   IGCEIYVAPRS---MRDREYGIDNENYHLVLLAKDMVGYKNLMKIVTMASIEG-FYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            +   +L+E  ++GLI L+   +G +         + A++  L +  +F     Y+ LQ H
Sbjct: 118  VDKEFLKE-HSKGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLELQDH 176

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +   ++++L+    +PLVATN+  +L ++D +AH+VL+ +     +  +DR   
Sbjct: 177  GILEQQKVNKELIRLSKETGIPLVATNDVHYLDKKDAKAHEVLLCIQTGKTIDDEDRMSF 236

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM ++FS   EA+ENT +IA  C+   + +   LP++   E  D     
Sbjct: 237  PTDEFYLKSPEEMENLFSYCKEAIENTEKIASMCNVEFEFNKTKLPKYDLPEGVD----S 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LRN    GL  R            ++  +RLD+EL+VI +M +  YFLIV DFI++A
Sbjct: 293  YEYLRNLCYEGLYKRYKN-------PNKEVIERLDYELSVIKQMGYVDYFLIVWDFIKFA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N I  GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC +RR
Sbjct: 346  KDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL  PY++VD + K+IP +    +
Sbjct: 406  QEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDVIAKMIPFELGMTI 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A++ +   +     D  V +L++IS+ LEGL RHASTHAAG+VI   PL   VP+ +
Sbjct: 466  D-KALSLNPELKVRYENDERVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYVPLQK 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + + +GV +D   + +DD 
Sbjct: 525  --NEDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVTIDFDSMEYDDP 582

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y L++   T G+FQLESSGM+Q +  ++P  +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 583  KVYELISKGETEGVFQLESSGMKQFMTELKPKNLEDIIAGISLYRPGPMDQIPRYLANKN 642

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E IV  HPL+ P+L  T G ++YQEQVMQI + ++GYSL  AD++RRAM KK  + M+
Sbjct: 643  HPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRADLVRRAMAKKKMDVME 702

Query: 727  KQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI G              +NG+ ++ A  +F+ +  FA+Y FNKSHAAAYAVI+Y
Sbjct: 703  QERKNFIYGMVDDEGNVIVPGALRNGLDESTANKLFDEMLDFANYAFNKSHAAAYAVIAY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEF+AA +   +DN++KI  +    ++  I+++PP +N     F V +++
Sbjct: 763  QTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVHVCKKMGIKVLPPDINESDSYFTVVEDK 822

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L+A+K VG      I+ E   +  F S+ DF  R+   +LN++ +ESL+ AGA   
Sbjct: 823  IRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAGAFSS 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG  R QLL   D + +  +    N  N   ++F   +     +           S    
Sbjct: 883  FGVRRSQLLSVYDKLMENIKKNRNNNINGQISLFGEIEQKHGVEFEFPDLEEFPKSRLLS 942

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---------ATIRGNNIRLAAMVVSK 1004
             E+  LG Y SGHPL+ Y   + K+      +                  + +A ++ +K
Sbjct: 943  MEKETLGLYISGHPLEEYVEDIPKITNATTLDFKVSEEEMFQPKLRDNQEVVIAGVISTK 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + K T+  + + +VT  +     E   FP
Sbjct: 1003 KIKFTKSNNMMAFVTIEDLYGTVEVIVFP 1031


>gi|297545038|ref|YP_003677340.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
            subsp. mathranii str. A3]
 gi|296842813|gb|ADH61329.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
            subsp. mathranii str. A3]
          Length = 1145

 Score = 1135 bits (2936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1049 (36%), Positives = 601/1049 (57%), Gaps = 45/1049 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VHS YSLL+G+  + +++ K       AIAITD   ++  ++F ++A A GI+PI
Sbjct: 2    FAHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAHGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +    M ++          +VLL     GY+ L+++V+   +        R
Sbjct: 62   IGCEIYVAPRS---MRDREYGIDNENYHLVLLAKDMVGYKNLMKIVTMASIEG-FYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            +   +L+E  ++GLI L+   +G +         + A++  L +  +F     Y+ LQ H
Sbjct: 118  VDKEFLKE-HSKGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLELQDH 176

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +   ++++L+    +PLVATN+  +L ++D +AH+VL+ +     +  +DR   
Sbjct: 177  GILEQQKVNKELIRLSKETGIPLVATNDVHYLDKKDAKAHEVLLCIQTGKTIDDEDRMSF 236

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM ++FS   EA+ENT +IA  C+   + +   LP++   E  D     
Sbjct: 237  PTDEFYLKSPEEMENLFSYCKEAIENTEKIASMCNVEFEFNKTKLPKYDLPEGVD----S 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LRN    GL  R            ++  +RLD+EL+VI +M +  YFLIV DFI++A
Sbjct: 293  YEYLRNLCYEGLYKRYKN-------PNKEVIERLDYELSVIKQMGYVDYFLIVWDFIKFA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N I  GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC +RR
Sbjct: 346  KDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL  PY++VD + K+IP +    +
Sbjct: 406  QEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDVIAKMIPFELGMTI 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A++ +   +     D  V +L++IS+ LEGL RHASTHAAG+VI   PL   VP+ +
Sbjct: 466  D-KALSLNPELKVRYENDERVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYVPLQK 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + + +GV +D   + +DD 
Sbjct: 525  --NEDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVTIDFDSMEYDDP 582

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y L++   T G+FQLESSGM+Q +  ++P  +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 583  KVYELISKGETEGVFQLESSGMKQFMTELKPKNLEDIIAGISLYRPGPMDQIPRYLANKN 642

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E IV  HPL+ P+L  T G ++YQEQVMQI + ++GYSL  AD++RRAM KK  + M+
Sbjct: 643  HPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRADLVRRAMAKKKMDVME 702

Query: 727  KQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI G              +NG+ ++ A  +F+ +  FA+Y FNKSHAAAYAVI+Y
Sbjct: 703  QERKNFIYGMVDDEGNVIVPGALRNGLDESTANKLFDEMLDFANYAFNKSHAAAYAVIAY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEF+AA +   +DN++KI  +    ++  I+++PP +N     F V +++
Sbjct: 763  QTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVHVCKKMGIKVLPPDINESDSYFTVVEDK 822

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L+A+K VG      I+ E   +  F S+ DF  R+   +LN++ +ESL+ AGA   
Sbjct: 823  IRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAGAFSS 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG  R QLL   D + +  +    N  N   ++F   +     +           S    
Sbjct: 883  FGVRRSQLLSVYDKLMENIKKNRNNNINGQISLFGEIEQKHGVEFEFPDLEEFPKSRLLS 942

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---------ATIRGNNIRLAAMVVSK 1004
             E+  LG Y SGHPL+ Y   + K+      +                  + +A ++ +K
Sbjct: 943  MEKETLGLYISGHPLEEYVEDIPKITNATTLDFKVSEEEMFQPKLRDNQEVVIAGVISTK 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + K T+  + + +VT  +     E   FP
Sbjct: 1003 KIKFTKSNNMMAFVTIEDLYGTVEVIVFP 1031


>gi|83590706|ref|YP_430715.1| DNA polymerase III DnaE [Moorella thermoacetica ATCC 39073]
 gi|83573620|gb|ABC20172.1| DNA polymerase III catalytic subunit, DnaE type [Moorella
            thermoacetica ATCC 39073]
          Length = 1156

 Score = 1134 bits (2934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1031 (38%), Positives = 606/1031 (58%), Gaps = 27/1031 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL+GA  + +++        PA+A+TD   ++ A+EF + A   GI+P
Sbjct: 3    SFVHLHVHSEYSLLDGAGRIKDLVRAAGEMGMPALALTDHGVMYGAVEFYKAAREQGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +                  +VLL + A GY+ L  LVS  +L        
Sbjct: 63   IIGCEVYVAPRSRHDREPH---RDDYQYHLVLLATDATGYRNLTALVSAAFLEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L    ++GLI L+   +G +      N    A +     +++F  +  Y+ LQ 
Sbjct: 119  RVDRELLSR-HSQGLIALSACLAGEVPAHLLKNREDAAYEAATWLREVFGPENFYLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                ++     ++V LA   ++PLVATN+  ++ ++   AHDVL+ +     +   +R R
Sbjct: 178  QGLPEQRQLNRRLVDLAARLKIPLVATNDVHYIRQDQARAHDVLLCIQTGKTLDDPNRLR 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T   YLK+ +EM ++F ++P AL NT+ IA RC F        LP +     +D    
Sbjct: 238  FPTAQFYLKSPAEMDNLFREVPSALANTLAIAERCHFDFTFGRLHLPAYQVPAGEDA--- 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR  +  GL+ R               RQRL++EL +I +M + GYFLIV D + +
Sbjct: 295  -ASYLRRLSYEGLKRRYPHDDGTA-------RQRLEYELGIIEQMGYPGYFLIVWDMVNF 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  IPVGPGRGS AGS+ AY L IT IDPLR++LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  ARRRGIPVGPGRGSAAGSLVAYCLGITSIDPLRYNLLFERFLNPERVSMPDIDMDFCFER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI+YV  KYG + VAQIITFG++ A+AA+RDVGR L +P  +VDR+ K++P +    
Sbjct: 407  RDEVIQYVLEKYGRDHVAQIITFGTMAARAAVRDVGRVLGLPLGEVDRIAKMVPMELGIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+A     +E+   +  V  LL+ ++ +EG+ RHAS HAAGIVI   PL   +P+ 
Sbjct: 467  LE-RALATSPDLKESYEGNREVRELLDTARAIEGMPRHASIHAAGIVITREPLIHYLPLQ 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            +    D   TQ+ M+ +E+ GL+K D LGL+TLT++  + + + +    ++DL  +P DD
Sbjct: 526  K--TGDAVTTQYPMQAVEELGLLKMDLLGLRTLTVIGHAREAIRRNHGRELDLESLPLDD 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
              TY LL +  T GIFQLESSGMR  L+ ++P+  EDIIALV+LYRPGP+ + +V  +  
Sbjct: 584  RPTYQLLASGETSGIFQLESSGMRAILKELKPERFEDIIALVALYRPGPLGSGMVEDFIK 643

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G   I  +HP ++P+LK+T GVI+YQEQVM+IA  L+G++L +AD+LRRAMGKK  E
Sbjct: 644  RKHGVTPISYLHPALEPILKDTYGVILYQEQVMRIASELAGFTLGQADLLRRAMGKKKPE 703

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  Q++RF++GA    I + +A  IFEL+  FA YGFN SH+AAYA+++YQTA++K HY
Sbjct: 704  VLAAQRDRFLAGAEAKAIPRDVAQKIFELMEYFAGYGFNASHSAAYALVAYQTAYLKAHY 763

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P E + A ++   ++++K++ +  + ++  I ++PP VN   VDF V   +I + LAA+K
Sbjct: 764  PAELMGALLSSVAEHLDKMEPYLAECQRLGIAVLPPDVNESGVDFTVTGRQIRFGLAAVK 823

Query: 844  G-VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
                      I    A  PF SL DFC RVDS++ N+RV+ESL+  GA +    +R QLL
Sbjct: 824  NAGRAAALAIIAAREAGGPFTSLLDFCRRVDSRQANKRVVESLIRCGAFNSINPNRRQLL 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              LD   + A   +++R +   ++        +D   L + +  + +     E+ +LGFY
Sbjct: 884  AGLDECLEVAARRQEDRRSGQVSLMDLVPEEVND-PPLPQVTDFSRADILAMEKELLGFY 942

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             SGHPL+ Y P+L+K+      +      G+ + +  +V   ++  TRKG  +  +T  +
Sbjct: 943  LSGHPLEPYAPVLKKLTSHSLADLAEIADGSQVTIGGLVSGLRRLVTRKGDPMAVLTLED 1002

Query: 1023 PAKEYEANFFP 1033
             + + EA  FP
Sbjct: 1003 FSGQVEAVLFP 1013


>gi|115524557|ref|YP_781468.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisA53]
 gi|115518504|gb|ABJ06488.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisA53]
          Length = 1165

 Score = 1134 bits (2933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 535/1033 (51%), Positives = 695/1033 (67%), Gaps = 12/1033 (1%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +  FVHL VHS+YSLL+G++ +  + D   AD QPA+A+TDT+N+F ALEFS K   AG
Sbjct: 2    SNAGFVHLHVHSAYSLLKGSIKIGKLADLAKADHQPALALTDTDNMFGALEFSDKMAGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPI+GC+L ID  D            P+   IVLL S   GY+ L++L SR +L     
Sbjct: 62   IQPIVGCELAIDFGDVDPTARNALAAGPS--RIVLLASRERGYRSLMKLNSRAFLETPVN 119

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q   I L WL +   E LI L+GG  GPI  A   +   +AE R      LFGDRLY+ L
Sbjct: 120  QVPHIKLDWLLDEA-EDLIALSGGPDGPISLAIAADQQALAETRCERLASLFGDRLYIEL 178

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH    +R  E  ++ LAY   LPLVATN   F S +DYEAHD L+ +A   ++++ DR
Sbjct: 179  QRHGVDAERRVEPALIDLAYAKGLPLVATNEPYFASTDDYEAHDALLCIASGKLIAETDR 238

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD---D 302
             ++TPDH  K R+EM  +F+DLPEAL +TVEIA RC+F  +   PILP F         D
Sbjct: 239  VQLTPDHRFKTRAEMAVLFADLPEALASTVEIAERCAFRPKTRKPILPFFTVGAGTGDTD 298

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                E  ELR +A  GL  RL    +A+G   +DYR RL FEL+VI RMK++GYFLIV+D
Sbjct: 299  AASLEAEELRVQAERGLAHRLEVHGLAQGVSEEDYRARLAFELDVITRMKYAGYFLIVSD 358

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK+  IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SMPDFDIDF
Sbjct: 359  FIKWAKQQGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSMPDFDIDF 418

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P +
Sbjct: 419  CQDRRGEVITYVQERYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQN 478

Query: 483  PAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA PVSL+ AI  + + +  R  DP V R  +I+Q+LEGL RHASTHAAGIVIGDRPLS+
Sbjct: 479  PAAPVSLKQAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSE 538

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QRGV V L  +
Sbjct: 539  LVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRGVHVALPTL 598

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD +T+ +L     +G+FQLES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  Y
Sbjct: 599  PLDDPDTFTMLARGDVVGVFQLESQGMRRALIDMRPDRFEDIIALVALYRPGPMANIPTY 658

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMGKKI
Sbjct: 659  CARKHGDEEPEYLHPILEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGKKI 718

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            + EM+KQ+  F+ GA KNG+ K  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+MK 
Sbjct: 719  RAEMEKQRAIFVDGAMKNGVPKGQADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMKA 778

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMTLE+ N +K+ +F  +A++  I++  PSVN     F+V D  I+Y+LA 
Sbjct: 779  HYPVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVADGTIFYALAG 838

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +KGVG      I+ A     F SL DF ++V+ + +N+RV+E L  AGA D    +R  +
Sbjct: 839  LKGVGQQAVEQIVAARQGGAFTSLADFAAKVNPRAINKRVIECLAAAGAFDQINPNRAAV 898

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
                + I    Q   + +     ++F       +  I L        + R   E   +GF
Sbjct: 899  SGGAEAILAACQRHHEAQVVGQNDMFGGSAD--APSIMLPPLEAWLPAERLRREYDAIGF 956

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            + SGHPLD Y   L+++ ++ + E   A   G    ++AA VVS+ +++T+ G+++G   
Sbjct: 957  FLSGHPLDDYAVALKRLRVQSWAEFCRAVKSGATAGKVAATVVSRMERRTKTGNKMGIFG 1016

Query: 1020 FSEPAKEYEANFF 1032
             S+    +EA  F
Sbjct: 1017 LSDATGHFEAVLF 1029


>gi|20808235|ref|NP_623406.1| DNA polymerase III DnaE [Thermoanaerobacter tengcongensis MB4]
 gi|20516832|gb|AAM25010.1| DNA polymerase III alpha subunit [Thermoanaerobacter tengcongensis
            MB4]
          Length = 1148

 Score = 1134 bits (2933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1050 (36%), Positives = 602/1050 (57%), Gaps = 46/1050 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+G+  + +++ K       AIAITD   ++  ++F ++A A GI+PI
Sbjct: 5    FVHLHVHTEYSLLDGSCRIKDLIAKTKELGMKAIAITDHGAMYGVIDFYKEAVAQGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +   +M ++          +VLL     GY+ L+++V+   L        R
Sbjct: 65   IGCEIYVAPR---RMQDREYGIDDENYHLVLLAKDMTGYKNLMKIVTAASLEG-FYYKPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            +   +L+   +EGLI L+   +G +         + A++  L +  +F     Y+ LQ H
Sbjct: 121  VDKEFLKN-HSEGLIALSACLAGEVPSLILRGDYEKAKEVALFYDSIFGRGNFYLELQDH 179

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +   ++V+++    +PLVATN+  +L ++D  AH+VL+ +     +  +DR   
Sbjct: 180  GILEQKKVNRELVRMSKETGIPLVATNDVHYLEKKDARAHEVLLCIQTGKTIEDEDRMLF 239

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +F+   EA+ENT +IA  C+   + +   LP++   E  D     
Sbjct: 240  PTDEFYLKSPEEMEELFACCKEAIENTEKIAEMCNIEFEFNKTKLPKYDLPEGVD----S 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LRN    GL  R           +Q+   RL++EL+VI +M +  YFLIV DFI++A
Sbjct: 296  YEYLRNLCYEGLYKRY-------KSPSQEVIDRLEYELSVIKQMGYVDYFLIVWDFIKFA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N I  GPGRGS AGS+ AY L IT++DP++++LLFERFLNP+R+SMPD D DFC +RR
Sbjct: 349  KDNGIMTGPGRGSAAGSLVAYTLGITNVDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL  PY++VD + K+IP +    +
Sbjct: 409  QEVIDYVVRKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDEIAKMIPFELGMTI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   +E    D  V +L++IS+ LEGL RHASTHAAG+VI   PL   VP+ +
Sbjct: 469  D-RALELNPELKERYEKDERVKQLIDISKALEGLPRHASTHAAGVVISKEPLVNYVPLQK 527

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + + +G+ +DL  + +DD 
Sbjct: 528  --NDDSVVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGIIIDLDSLNYDDP 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y L++   T G+FQLES GMRQ +  ++P  +EDIIA +SLYRPGP+D I  Y   +N
Sbjct: 586  KVYELISKGETEGVFQLESPGMRQFMTELKPKNLEDIIAGISLYRPGPMDQIPKYLANRN 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              EKI   HP++ P+L+ T G ++YQEQVMQI + ++GYSL  AD++RRAM KK  + M+
Sbjct: 646  NPEKIEYEHPILKPILEVTYGSLVYQEQVMQIVRDVAGYSLGRADLVRRAMAKKKMDVME 705

Query: 727  KQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI G              +NG+ +  A  +F+ + +FA+Y FNKSHAAAYAVI+Y
Sbjct: 706  QERKNFIYGIVDEEGNVVVPGALRNGLDEETANRLFDQMLEFANYAFNKSHAAAYAVIAY 765

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K ++PVEF+AA +   +DN++KI  + Q  ++  I+++PP +N     F V  ++
Sbjct: 766  QTAYLKRYFPVEFMAALLNSFVDNLDKIAFYVQVCKKMGIKVLPPDINESDSYFTVVGDK 825

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L+A+K VG      I+ E  A   F S+ DF  R+   +LN++ +ESL+ AGA   
Sbjct: 826  IRFGLSAVKNVGINVTEEIVREREARGKFKSVIDFFERMQDSQLNKKAIESLIKAGAFAS 885

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
             G  R QLLQS D + +  +  + +      ++F   +                 +    
Sbjct: 886  LGVKRSQLLQSYDKLIESVKKAKSSAIEGQISLFEVSEEHKEIDFRFPDVEEYPKNRILS 945

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV----------ATIRGNNIRLAAMVVS 1003
             E+  LG Y SGHPL+ Y   + K+      +                   + +A ++V+
Sbjct: 946  MEKETLGLYISGHPLEEYLEDIPKITNVTTLDFKINPEDEMFTSKLEDNQEVTIAGVIVA 1005

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K+ K TR  + + +VT  +     E   FP
Sbjct: 1006 KKVKFTRNSNIMAFVTLEDMYGTVEVIVFP 1035


>gi|146341074|ref|YP_001206122.1| DNA polymerase III subunit alpha [Bradyrhizobium sp. ORS278]
 gi|146193880|emb|CAL77897.1| DNA polymerase III, alpha subunit [Bradyrhizobium sp. ORS278]
          Length = 1174

 Score = 1134 bits (2933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 534/1035 (51%), Positives = 707/1035 (68%), Gaps = 13/1035 (1%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S  FVHL VHS+YSLL+G++ +  + +   AD+QPA+A+TDT+N+F ALEFS K    G
Sbjct: 2    SSAGFVHLHVHSAYSLLKGSIKIAKLGELAKADRQPALALTDTDNMFGALEFSDKMAGYG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPI GC+L ID  D +    +          IVLL +  EGY+ L+ L SR +L     
Sbjct: 62   IQPIAGCELAIDFGD-MDPNARNAGAVAQPSRIVLLAANEEGYRHLMRLNSRAFLETPTH 120

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q+  I   WL E G +GLI LTGG  GPI  A   + + +A +R       FGDRLY+ L
Sbjct: 121  QAPHIKFDWLTE-GVDGLIALTGGPDGPISLALQHDMAALAAQRCERLAGQFGDRLYIEL 179

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH    +R  E  ++ +AY   LPLVATN   F S +DYEAHD L+ +A   +++  DR
Sbjct: 180  QRHGTERERRVEGGLIDIAYDKGLPLVATNEPYFASTDDYEAHDALLCIAGGHLIADTDR 239

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD---- 301
             ++TPDH  K R+EM  +F+DLPEAL +TVEIA RCS+  +   PILP F          
Sbjct: 240  VQLTPDHRFKTRAEMAVLFADLPEALASTVEIAERCSYRPRTRKPILPFFTVGAGTGDTV 299

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D    E  EL+ +A  GLE RL    +A G   +DY++RL FEL+VI RMK++GYFLIV+
Sbjct: 300  DAASAEAAELKRQAEEGLERRLKVHGMAPGMTEEDYQKRLAFELDVIMRMKYAGYFLIVS 359

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ A+ LTITD+DP+RF+LLFERFLNP+R+SMPDFDID
Sbjct: 360  DFIKWAKAHGIPVGPGRGSGAGSLVAWVLTITDLDPMRFALLFERFLNPERVSMPDFDID 419

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P 
Sbjct: 420  FCQDRRGEVISYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQ 479

Query: 482  DPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA PV+L A I  + + +  R  DP V R  +I+ +LEGL RHASTHAAGIVIGDRPLS
Sbjct: 480  NPAAPVTLAAAIEGEPKLQAFRDEDPVVARAFDIAMRLEGLTRHASTHAAGIVIGDRPLS 539

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVPMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QR V VDL+ 
Sbjct: 540  ELVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRDVHVDLAT 599

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  +Y +L     +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  
Sbjct: 600  LPIDDAASYQMLARGDVVGVFQVESQGMRRALIDMRPDRFEDIIALVALYRPGPMANIPT 659

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  RK+G+E+   +HP+++P+LKET GVIIYQEQVMQ+AQ +SGYSL EAD+LRRAMGKK
Sbjct: 660  YCARKHGEEEPEYLHPILEPILKETFGVIIYQEQVMQVAQQMSGYSLGEADLLRRAMGKK 719

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+ EMDKQ+ RF+ GA KNG+ K  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+MK
Sbjct: 720  IRAEMDKQRVRFVEGAVKNGVPKDQADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMK 779

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEF+AASMTL+++N +K+ +F  +A++  I++ PPS+N     F+V  N I+Y+LA
Sbjct: 780  AHYPVEFIAASMTLDLNNTDKLSEFRAEAQRLGIKVEPPSINRSGPTFEVSGNTIFYALA 839

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            A+KGVG      I+EA     PF SL DF SRV  + +N+R++E+L  AGA DC   +R 
Sbjct: 840  ALKGVGPQAIEMIVEARNKGGPFTSLADFASRVSPRAINKRIIETLAAAGAFDCLDKNRA 899

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            ++    D I    Q   +  T+   ++F +     +  I L        + R   E   +
Sbjct: 900  RVFAGADAIVAACQRANEAATSGQNDMFGNAAD--APAIILPNIENWLPAERLRREYDAI 957

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAMVVSKQQKKTRKGSRIGW 1017
            GF+ SGHPLD Y   L+++ ++ + E    ++ G    ++AA VVS+ +++T+ G+++G 
Sbjct: 958  GFFLSGHPLDDYAAALKRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGNKMGI 1017

Query: 1018 VTFSEPAKEYEANFF 1032
            +  S+P   +EA  F
Sbjct: 1018 MGLSDPTGHFEAVLF 1032


>gi|254469239|ref|ZP_05082644.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio
            sp. JE062]
 gi|211961074|gb|EEA96269.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio
            sp. JE062]
          Length = 1144

 Score = 1133 bits (2932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 536/1032 (51%), Positives = 730/1032 (70%), Gaps = 14/1032 (1%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SP FVHL+VHS+YSLLEGAL +  ++D  + D+QPA+AITD+ NLF ALEFS+KA  AG
Sbjct: 2    SSPGFVHLRVHSAYSLLEGALPIGKLIDLASKDEQPALAITDSGNLFGALEFSEKAFGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +QPIIGCQ+ ++ +D         +    V  +VLL +  EGY+ L++LVSR +L  +  
Sbjct: 62   MQPIIGCQVSVNFED-----QPDVSGDDAVSDLVLLAANEEGYENLMDLVSRAFLDTEPG 116

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                + +S +    + G+I+LTG S GPI+         +A+ RL   +  FGDRLYV L
Sbjct: 117  FKANVPISRVLN-KSGGVIVLTGASEGPINSQLREGHVDLAKSRLELLQNTFGDRLYVEL 175

Query: 187  QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH    +   E +++ LAY   +P+VATN + F + +DYEAHD L+A++   V+ + DR
Sbjct: 176  QRHNMKGEEDVEPELLNLAYELNIPIVATNEAFFPNPDDYEAHDALIAISEGRVLVETDR 235

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDI 303
             ++TP+H  K R +M+ +FSDLPEALEN+V IA+RC +     APILPRF   + + ++ 
Sbjct: 236  RQLTPEHCFKTREQMMELFSDLPEALENSVVIAQRCHYRPLKRAPILPRFAGADADAEEA 295

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ E  EL  +A  GL+ RL    +A     +DY  RLD+EL +I RMKF GYFLIVADF
Sbjct: 296  ERAEAEELTRQAKEGLQARLDVHGLAPDLEEKDYWDRLDYELGIIIRMKFPGYFLIVADF 355

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK  +IPVGPGRGSGAGS+ A++LTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFC
Sbjct: 356  IKWAKNEDIPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFERFLNPERVSMPDFDIDFC 415

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q+RR+EVIRYVQ KYG E+VAQIIT+G+LQAKA LRDVGR LQMPY QVDRL KL+P +P
Sbjct: 416  QNRREEVIRYVQRKYGREQVAQIITYGTLQAKAVLRDVGRVLQMPYGQVDRLSKLVPGNP 475

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A+P +L +A+  + R REA   +  VDRLL+++ KLEGLYRHASTHAAG+VIGDRPL QL
Sbjct: 476  ANPCTLPEALEQEPRLREAAKQEEVVDRLLKMAMKLEGLYRHASTHAAGVVIGDRPLEQL 535

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD RSD+PV QFNMKW+E AGL+KFDFLGLKTLT++  ++  + +RG++V +  IP
Sbjct: 536  VPLYRDPRSDMPVAQFNMKWVEAAGLVKFDFLGLKTLTVIDTAVSHIKKRGIEVKIEEIP 595

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  TY LL    T+G+FQLES GMR+A+ GM+PD  EDI+ALV+LYRPGP+DNI +YN
Sbjct: 596  IDDPLTYKLLAAGETVGVFQLESQGMRRAIAGMRPDRFEDIVALVALYRPGPMDNIPIYN 655

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K+G+++   +HPL++P+L ET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI 
Sbjct: 656  AVKHGEQEPDYLHPLLEPILTETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIA 715

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EM+ Q+ RF+ GA +  + K  A  I++L+AKFA+YGFNKSHAAAYA+++YQTAW+K +
Sbjct: 716  SEMEIQRARFVEGAVEQKVDKDQAGMIYDLVAKFANYGFNKSHAAAYALVAYQTAWLKAN 775

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YPVEFLA  MTL++ N +K+  F Q+A +  I+++PP+VN   V F V D +I Y++ AI
Sbjct: 776  YPVEFLAGIMTLDLGNTDKLSDFRQEAMRMGIEVVPPNVNKSGVHFDVQDGKIVYAMGAI 835

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KGVG     HI+E   D+PF  L DF +R+  K LN+R +E+L+ AGA D    +R QLL
Sbjct: 836  KGVGEQAVEHIVEVRGDEPFKDLADFATRISPKVLNKRTIENLISAGAFDELNPNRAQLL 895

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              LD I   AQ  E+N+ +   + F  +     + + L        S R + E   +GFY
Sbjct: 896  DGLDRIIGMAQRTEENKNSGQNDFFGGDNA--PEPLILNPTDPWLPSERLQKEHAAVGFY 953

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAMVVSKQQKKTRKGSRIGWVTF 1020
             S HPLD Y+ +  K+ ++ +++   +++ G++  RLA  V +KQ++KTR G+++G V  
Sbjct: 954  ISAHPLDEYRELFTKLRVQLWKDFERSVKAGSSAGRLAGTVTAKQERKTRTGNQMGIVRI 1013

Query: 1021 SEPAKEYEANFF 1032
            S+P  +YEA  F
Sbjct: 1014 SDPTGQYEAVMF 1025


>gi|90423933|ref|YP_532303.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisB18]
 gi|90105947|gb|ABD87984.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB18]
          Length = 1185

 Score = 1133 bits (2931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 535/1040 (51%), Positives = 702/1040 (67%), Gaps = 15/1040 (1%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            T  +  +  FVHL VHS+YSLL G++ +  + +   AD QPA+A+TDT+N+F ALEFS+K
Sbjct: 16   TAPMTNA-GFVHLHVHSAYSLLRGSIKVAKLCELAKADHQPALALTDTDNMFGALEFSEK 74

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
                GIQPI+GC+L +D  D         +  P+   IVLL +   GY+ LI+L SR +L
Sbjct: 75   MAGYGIQPIVGCELAVDFGDQDPNARNALSAAPS--RIVLLAARERGYRSLIKLNSRAFL 132

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                 Q+  I L WL     E LI L+GG  GPI  AF  + + +AE R      LFGDR
Sbjct: 133  ETPVNQTPHIKLDWLNGEA-EDLIALSGGPEGPISLAFTADQAGLAEARCDRLAALFGDR 191

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            LY+ LQRH    +R  E+ ++ LAY   LPLVATN   F + +DYEAHD L+ +A   +V
Sbjct: 192  LYIELQRHGVDAERRAEAALIDLAYAKGLPLVATNEPYFATNDDYEAHDALLCIAGGRLV 251

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            ++ DRP++TPDH  K R+EM  +F+DLPEAL +TVEIA RC+F  +   PILP F     
Sbjct: 252  AETDRPQLTPDHRFKTRAEMAVLFADLPEALASTVEIAERCAFRPRTRKPILPHFTLGAG 311

Query: 301  DD-----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                       E +E+R +A  GL  RL    +AKG   ++YR RL+FEL +I RM+++G
Sbjct: 312  TGSHAAAASSNEADEVRAQAEQGLIKRLQVHGVAKGATEEEYRARLEFELGIITRMQYAG 371

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DFI+WAK+N IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SM
Sbjct: 372  YFLIVGDFIKWAKENGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSM 431

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQDRR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L
Sbjct: 432  PDFDIDFCQDRRGEVIEYVQRRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKL 491

Query: 476  CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KL+P +PA PV+L+ AI  + + +  R  DP V R   I+Q+LEGL RHASTHAAGIVI
Sbjct: 492  TKLVPQNPAAPVTLKQAIESEPKLQAFRDEDPVVARAFNIAQRLEGLTRHASTHAAGIVI 551

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
            GDRPLS+LVPMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT L  ++  L QRGV
Sbjct: 552  GDRPLSELVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRGV 611

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V L  +P DD +T+ +L     +G+FQLES GMR+AL  M+PD  EDIIALV+LYRPGP
Sbjct: 612  VVSLPTVPLDDPDTFAMLGRGDVVGVFQLESQGMRRALIDMRPDRFEDIIALVALYRPGP 671

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + NI  Y  RK+G E+   +HP+++ +LKET GVIIYQEQVMQIAQ+++GYSL +AD+LR
Sbjct: 672  MANIPTYCARKHGDEEPEYLHPILESILKETFGVIIYQEQVMQIAQVMAGYSLGQADLLR 731

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKKI+ EM+KQ+  FI+G+ ++G+ K  A  IFELLAKFADYGFNKSHAAAYA++SY
Sbjct: 732  RAMGKKIRAEMEKQRAGFIAGSVEHGVPKAQADAIFELLAKFADYGFNKSHAAAYALVSY 791

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TA+MK HYPVEFLAASMTLE+ N +K+ +F  +A++  I++  PSVN     F+V D  
Sbjct: 792  HTAYMKAHYPVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKLEAPSVNRSGATFEVADGV 851

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            IYY+LAA+KGVG      I+E      F SL DF ++V  K +N+RV+ESL  AGA D  
Sbjct: 852  IYYALAALKGVGAQAVELIVEGRKGGLFSSLADFAAKVSPKAINKRVIESLAAAGAFDGL 911

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R  +    D I    Q   +       ++F       +  I L +      + R   
Sbjct: 912  NPNRAAVFGGADAIMAACQRHHEAAAMGQNDMFGGMAD--APTIMLPQLEAWLPAERLRR 969

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKG 1012
            E   +GF+ SGHPLD Y   L+++ ++ + E   A   G    ++AA VVS+ +++T+ G
Sbjct: 970  EYDAIGFFLSGHPLDDYATALKRLRVQSWAEFCRAVKSGATAGKVAATVVSRMERRTKTG 1029

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +++G +  S+P   +EA  F
Sbjct: 1030 NKMGILGLSDPTGHFEAVLF 1049


>gi|85716997|ref|ZP_01047960.1| DNA polymerase III subunit alpha [Nitrobacter sp. Nb-311A]
 gi|85696199|gb|EAQ34094.1| DNA polymerase III subunit alpha [Nitrobacter sp. Nb-311A]
          Length = 1167

 Score = 1133 bits (2930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 528/1040 (50%), Positives = 712/1040 (68%), Gaps = 15/1040 (1%)

Query: 1    LTQY-LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
            +TQ  +     FVHL VHS+YSLL+G++ +  + +   AD QPA+A+TDT+N+F ALEFS
Sbjct: 1    MTQKTVAAHAGFVHLHVHSAYSLLKGSIKIQKLAELARADHQPALALTDTDNMFGALEFS 60

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
             K    GIQPI+GC+L +D  D        +   P +  +VLL +   GY+ L+ L SR 
Sbjct: 61   DKVAGYGIQPIVGCELAVDFGD---QDANARNAIP-LARVVLLATREAGYRNLMRLNSRA 116

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +L      S  +   WL++   EGLI LTGG  GP+  AF  + S +A  R      +FG
Sbjct: 117  FLETPEHCSPHVSWEWLRD-ENEGLIALTGGPDGPVAMAFNADHSALATARCDQLAMIFG 175

Query: 180  DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            DRLYV LQRH    +R  E  ++ LAY   LPLVATN   F + +DYEAHD L+ +A   
Sbjct: 176  DRLYVELQRHGLDKERRVEGALIDLAYAKGLPLVATNEPYFATSDDYEAHDALLCIAGGR 235

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +V++ +R ++TPDH  K R+EM  +F+D+PEAL +T+EIA RC+F  +   PILPRF   
Sbjct: 236  LVAETEREQLTPDHRFKTRAEMAVLFADIPEALASTIEIAERCAFRPRTRKPILPRFTVA 295

Query: 299  E---CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                  D + +E  ELR +A  GL  RLA   ++ G   +DY +RL FEL+VI RM ++G
Sbjct: 296  SDAGAADGKNDEAAELRRQAEEGLAKRLAVHGVSTGMTEEDYGKRLGFELDVITRMNYAG 355

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI++AK   IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SM
Sbjct: 356  YFLIVADFIKYAKSKGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSM 415

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ+RR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L
Sbjct: 416  PDFDIDFCQERRGEVIDYVQKRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKL 475

Query: 476  CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KL+P +PA PVSL+ AI  + + +  R  DP V R  +I+Q+LEGL RHASTHAAGIVI
Sbjct: 476  TKLVPQNPAAPVSLKQAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVI 535

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
            GDRPLS+LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QR +
Sbjct: 536  GDRPLSELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRNI 595

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VDL+ +P DD  +Y +LT    +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP
Sbjct: 596  HVDLATLPLDDAASYQMLTQGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGP 655

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + NI  Y  RK+G+E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LR
Sbjct: 656  MANIPTYCARKHGEEESEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLR 715

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKKI+ EM+KQ+  F++G+ K+G+ +  A  IFELLAKFADYGFNKSHAAAYA++SY
Sbjct: 716  RAMGKKIRAEMEKQRAIFVAGSVKSGVPQGQAETIFELLAKFADYGFNKSHAAAYALVSY 775

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA+MK HYPVEFLAASMTL+M N +K+ +F  +A++  I++  PSVN     F+V +  
Sbjct: 776  QTAYMKAHYPVEFLAASMTLDMSNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVSEGV 835

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I Y+LAA+KGVG+     I+EA  +  F SL DF +RV  + +N+RV+ESL  AGA D  
Sbjct: 836  ICYALAALKGVGSHAVELIVEARKNGLFTSLADFAARVPPRAINKRVIESLAAAGAFDAL 895

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R ++    + I    Q   +  T    ++F       +  I L +      + R   
Sbjct: 896  EPNRARVFAGAEAILAACQRSHEAMTLGQNDMFGGMAD--APDILLPRVEPWLPADRLRR 953

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAMVVSKQQKKTRKG 1012
            E   +GF+ SGHPLD Y   L+++ ++ + E    ++ G    ++AA VVS+ +++T+ G
Sbjct: 954  EYEAVGFFLSGHPLDDYVTALKRLRVQSWVEFSRAVKAGATAGKVAATVVSRTERRTKTG 1013

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +++G +  S+P   +EA  F
Sbjct: 1014 NKMGIIGLSDPTGHFEAVLF 1033


>gi|328543710|ref|YP_004303819.1| DNA polymerase III subunit alpha [Polymorphum gilvum SL003B-26A1]
 gi|326413454|gb|ADZ70517.1| DNA polymerase III subunit alpha [Polymorphum gilvum SL003B-26A1]
          Length = 1146

 Score = 1133 bits (2930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 567/1029 (55%), Positives = 728/1029 (70%), Gaps = 12/1029 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VHS+ SLLEGAL +  +LD   AD QPA+AITDT NLF A EFS KA  AGIQP
Sbjct: 5    GFVHLRVHSALSLLEGALPIKKLLDLAKADAQPALAITDTGNLFGAQEFSGKAWGAGIQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGCQL +   D      +G+ P   +  +VLL ++  GY  L+EL SR YL        
Sbjct: 65   IIGCQLAVAFDDGGGEDRRGEPP---LLDVVLLAASEAGYGNLMELSSRAYLDTATGLKP 121

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +  + L+E  + GLI+LTGG +GPI RA    +  +AE RL      F +R YV LQRH
Sbjct: 122  HVPAALLEE-KSGGLILLTGGVNGPIGRALLAGNRTLAEARLKRLAAAFPNRTYVELQRH 180

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +  R E   ++LAY   LPLVATN + F   EDYEAHD L+ +A   V+ ++DR ++
Sbjct: 181  GMAEERRCEPGFLELAYELGLPLVATNEAFFPKREDYEAHDALICIAEGRVLIEEDRRKL 240

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306
            TP+HY K+R+EM+ +F DLPEA  NTVEIARRC +      PILPRF   + + +  +K 
Sbjct: 241  TPEHYFKSRAEMLELFCDLPEATANTVEIARRCHYRPLRRDPILPRFAGADADPEAAEKA 300

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E  ELR +A  GL+ RL    +A G   QDY  RLD+EL VI RMKF GYFLIVADFI+W
Sbjct: 301  EAEELRRQARDGLKARLEAHGLAPGLGQQDYWDRLDYELGVIERMKFPGYFLIVADFIKW 360

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK ++IPVGPGRGSGAGSV A+ALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQ R
Sbjct: 361  AKAHDIPVGPGRGSGAGSVVAWALTITDLDPMRFSLLFERFLNPERVSMPDFDIDFCQYR 420

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVIRYVQ KYG  +VAQIITFGSLQA+A LRDVGR LQMPY QVDRLCKL+P +PA+P
Sbjct: 421  REEVIRYVQEKYGRRQVAQIITFGSLQARAVLRDVGRVLQMPYGQVDRLCKLVPANPANP 480

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+L QAI D+ R REA   +  VDRLL ++QKLEGLYRHASTHAAG+VIGDRPL QLVP+
Sbjct: 481  VTLAQAIGDEPRLREAAREEEIVDRLLTMAQKLEGLYRHASTHAAGVVIGDRPLEQLVPL 540

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD RSD+PV QFNMK +E AGL+KFDFLGLKTLT++  ++  +A++GV VD++ +P DD
Sbjct: 541  YRDPRSDMPVAQFNMKMVEDAGLVKFDFLGLKTLTVIDTAVKLIARKGVTVDMASVPLDD 600

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              TY LL    T+G+FQLES GMR+A+ GM+PD  EDIIALV+LYRPGP++NI VYN  K
Sbjct: 601  ARTYQLLARGETVGVFQLESQGMRRAIAGMKPDRFEDIIALVALYRPGPMENIPVYNAVK 660

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+++   +HPL++P+LKET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI  EM
Sbjct: 661  HGEQEADYLHPLLEPILKETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIAAEM 720

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            + Q+ RF+ GA + G+ +  A  IF+L+AKFA+YGFNKSHAAAYA++SY TAW+K ++PV
Sbjct: 721  EVQRARFVDGAVERGVDRDQAGTIFDLVAKFANYGFNKSHAAAYALVSYHTAWLKANHPV 780

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+AASMTL++ N +K+  F Q+AR+  I I+PPS+N     F V D RI Y+L AIKGV
Sbjct: 781  EFMAASMTLDLGNTDKLGDFRQEARRMGIAIVPPSINRSMHPFDVDDGRIVYALGAIKGV 840

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G    +HI+EA   +PF SL DF  RV  + LN+R LESL  AGA D    +R ++L+ L
Sbjct: 841  GEQAVQHIVEARGTQPFRSLGDFARRVSPRFLNKRTLESLAAAGAFDDLEPNRARVLEGL 900

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D I   AQ  E+N       +F          + L + +    + R + E   +GFY S 
Sbjct: 901  DRIIGIAQRTEENSVLGQNELFGGGGEEE--DLHLPEVAAWMPAERLQREHAAIGFYLSS 958

Query: 966  HPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            HPLD Y+P+L +M ++ + + S A  RG +  RLA  V+S+Q++KT+ G+R+G V  S+ 
Sbjct: 959  HPLDEYQPLLERMRVQSWAQFSEAVKRGASAGRLAGTVISRQERKTKSGNRMGIVRLSDA 1018

Query: 1024 AKEYEANFF 1032
            + ++EA  F
Sbjct: 1019 SGQFEALLF 1027


>gi|302392623|ref|YP_003828443.1| DNA polymerase III catalytic subunit, DnaE type [Acetohalobium
            arabaticum DSM 5501]
 gi|302204700|gb|ADL13378.1| DNA polymerase III catalytic subunit, DnaE type [Acetohalobium
            arabaticum DSM 5501]
          Length = 1129

 Score = 1131 bits (2926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1033 (38%), Positives = 617/1033 (59%), Gaps = 30/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YSLL+GA  +  ++ + A    PA+AITD  N++ A+EF + A  AGI+P
Sbjct: 3    GFVHLHCHTEYSLLDGAARIGELVTQAADYGMPALAITDHGNMYGAVEFYKAAKDAGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ +  +      NQ      +   +VLL    +GY+ L++LVS+ YL        
Sbjct: 63   IIGSEVYVAPESRF---NQKHNRADSPYHLVLLAKNNQGYRNLLKLVSKGYLEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
            +I L  L++   EGLI L+G  +G I R       Q  ++ + T++ +FG+   Y+ LQ 
Sbjct: 119  QIDLELLRKY-NEGLICLSGCLAGRIARGLLNEQQQQVKEMISTYQDIFGENDFYLELQD 177

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                 ++     +++L    ++PLVATN+  +L++ED +AHDVL+ +    +++ +DR +
Sbjct: 178  QGLRKEKIINHSLIELGEEMDVPLVATNDVHYLNQEDAQAHDVLLCIQTGKLLTTEDRMK 237

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  YLK+  EM  IFS++P+A+ENTVEIA+RC+  L      LP +   E    +K 
Sbjct: 238  FPNDEFYLKSGQEMADIFSEVPQAIENTVEIAKRCNVELDFDQTYLPYYDVPE----EKN 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR   + G   R        G    + ++RLD+EL +I  M +  YFLIV DFI++
Sbjct: 294  LSSYLRELCLKGARKRY-------GEVTDEVQERLDYELEIINEMGYPAYFLIVWDFIEY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+  I VGPGRGS AGS+ +Y L ITDIDPL   L+FERFLNP R+SMPD DIDFC  R
Sbjct: 347  AKEKGIMVGPGRGSAAGSLVSYVLGITDIDPLEHGLIFERFLNPQRVSMPDIDIDFCYQR 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV  KYG +RVAQIITFG++ A+A +RDVGR L + Y+QVD++ KLIP D    
Sbjct: 407  RDEVIDYVTEKYGQDRVAQIITFGTMAARAVVRDVGRVLDLSYAQVDKIAKLIPFDADLD 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               +A+      ++       +  L++ +QKLEGL RHASTHAAG+VI    L++  P+ 
Sbjct: 467  ---EALESSQELKDLCQKKDEIKELIDYAQKLEGLPRHASTHAAGVVISKEELTEYTPLQ 523

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            ++       TQ+ M  +E  GL+K DFLGL+TLT++  +L+ + +   +K+DL  IP DD
Sbjct: 524  QNKGE--VTTQYPMGDLEAIGLLKMDFLGLRTLTVINNTLEIIERTQGIKLDLDEIPLDD 581

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
             +TY LL T  T G+FQ+ES+  ++ +  ++P   ED+IAL++L RPGP+ + +V  +  
Sbjct: 582  EQTYQLLQTGNTEGLFQIESNLFQRLIADLKPTRFEDLIALLALGRPGPLGSGMVDDFIK 641

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++G+ ++   H  ++ +L+ET GVI+YQEQVM+IA  ++GYSL EAD+LRR MGKK  E
Sbjct: 642  RRHGEAEVEYPHADLEEILEETYGVILYQEQVMRIANEIAGYSLGEADILRRGMGKKKPE 701

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             + K +++FI GA   G S+ +A  +F+L+  F  YGFNKSH+AAYA +SY+TA++KT+Y
Sbjct: 702  LLKKHRQKFIDGALDKGYSEELANELFDLMEYFGGYGFNKSHSAAYAFVSYRTAYLKTYY 761

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVE++AA ++  M N +K+ ++ ++  +  I+++PP VN   V F V  +RI + L A+K
Sbjct: 762  PVEYMAALLSSIMGNSDKVARYIEECNRMGIEVLPPDVNESEVRFTVVGDRIRFGLEAVK 821

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      I+ A   +  F+SL DFC +V   K+N+RV+ESL+ AGA D  G  R Q+L
Sbjct: 822  NVGQKAIEEIIRARQEEGAFESLTDFCQKVFLGKVNQRVIESLIKAGAFDSLGAYRSQML 881

Query: 903  QSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
              ++++ + A  ++K + N  ++   F +     + ++ L + S  +       E+  LG
Sbjct: 882  TVIEDLYEQAHKIQKEKGNGQQSFGDFLNADEFGNVEVKLPEMSEYSHDQLLAMEREYLG 941

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             Y SGHP+D Y+ +L +   +             +R   ++ S  Q  T+ G  + ++  
Sbjct: 942  LYISGHPIDKYQDLLAENRFESIVAIKDLADKEEVRFGGIINSINQIITKNGKDMAFLEL 1001

Query: 1021 SEPAKEYEANFFP 1033
             +   + E   FP
Sbjct: 1002 EDRTGQLEVVVFP 1014


>gi|82542783|ref|YP_406730.1| DNA polymerase III subunit alpha [Shigella boydii Sb227]
 gi|81244194|gb|ABB64902.1| DNA polymerase III alpha subunit [Shigella boydii Sb227]
          Length = 1142

 Score = 1129 bits (2921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG++  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGVNAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|125973779|ref|YP_001037689.1| DNA polymerase III DnaE [Clostridium thermocellum ATCC 27405]
 gi|281417936|ref|ZP_06248956.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
 gi|125714004|gb|ABN52496.1| DNA polymerase III catalytic subunit, DnaE type [Clostridium
            thermocellum ATCC 27405]
 gi|281409338|gb|EFB39596.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
          Length = 1181

 Score = 1129 bits (2920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1068 (35%), Positives = 598/1068 (55%), Gaps = 62/1068 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA  + +++ +       +IAITD   ++  ++F ++A   GI+PI
Sbjct: 5    FVHLHVHTEYSLLDGANRIKDLIRRTKELGMDSIAITDHGVMYGVVDFYKEAVNNGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++               +       +VLL     GY+ L+++VS  +         R
Sbjct: 65   LGCEIYTAKGSRFDKQGGWDSD---PGHMVLLAKNNTGYKNLMKIVSIGFTEG-FYYKPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            + +  L++  +EGLI ++   SG I +A   N+ + A++  L    +F  D  Y+ LQ +
Sbjct: 121  VDMEVLEKY-SEGLIAMSACLSGDIPKAILNNNYEKAKELALKLNSIFGQDNFYLELQMN 179

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     Q+++L+    +PLVATN++ +L  ED  AH++L+ +     ++ +DR R 
Sbjct: 180  GIEEQNIVNQQLIKLSRETGIPLVATNDAHYLRREDARAHEILLCIQTGKSINDEDRMRF 239

Query: 249  TPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            + D +  K+  EM+S+F ++PEA+ NTV IA  C+  L+ +   LP+F   +     K+ 
Sbjct: 240  SSDDFYIKSPEEMISLFRNIPEAISNTVRIADMCNVELEFNKLHLPKFDVPDG----KDP 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     G E         K    ++   RL++EL+VI +M +  YFLIV+DFI++A
Sbjct: 296  FEYLRALCYEGFER-----IYGKDNRDEEKINRLEYELSVIKQMGYVDYFLIVSDFIRYA 350

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+  I VGPGRGS AGS  AY L IT+IDPL+++LLFERFLNP+R+SMPD DIDFC +RR
Sbjct: 351  KEKGIMVGPGRGSAAGSFVAYCLGITNIDPLKYNLLFERFLNPERISMPDIDIDFCFERR 410

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RVAQIITFG++ A+A +RDVGRAL +PY +VD + K+IP      +
Sbjct: 411  QEVIDYVVEKYGKDRVAQIITFGTMAARAVIRDVGRALDIPYGEVDAIAKMIPFQIGMSI 470

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   R+    D  V  L++ ++ LEG+ RHASTHAAG+VI   PL++ VP+ R
Sbjct: 471  E-KAMELNPELRQRYNDDERVKELIDTAKLLEGMPRHASTHAAGVVISREPLTEYVPLQR 529

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                D   TQF M  +E+ GL+K DFLGL+TLT+++ ++  + +   + V +  +  DD 
Sbjct: 530  --SEDSITTQFPMGILEELGLLKMDFLGLRTLTVIRDAVALIKKNHNIDVKIDELQMDDP 587

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              + L+    T G+FQLES+GM Q ++ +QP  +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 588  NVFKLIGEGRTAGVFQLESAGMTQFMKELQPASLEDIIAGISLYRPGPMDQIPRYLRNKN 647

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E +   HPL++ +L  T G ++YQEQVMQI + L+GYS+  +D++RRAM KK    M+
Sbjct: 648  NPELVKYDHPLLENILNVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMAKKKVSVME 707

Query: 727  KQKERFISGA------------SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI G              +NG+ +  A  IF+ +  FA Y FNKSHAAAYAVI+Y
Sbjct: 708  QERKNFIYGIDDDNGNIIVKGAVRNGVDEETANKIFDEMMDFASYAFNKSHAAAYAVIAY 767

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTAW+K +YPVEF+AA +   M + +KI ++  + R+  I+++PP +N   V F V + +
Sbjct: 768  QTAWLKCYYPVEFIAALLNSFMGSSDKISQYVHECRKLGIEVLPPDINESDVRFTVVNGK 827

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + LAA+K VG    R I++    +  + S  +F  RVD K +N+R +ESL+ +GA D 
Sbjct: 828  IRFGLAAVKNVGENAVRSIIDERNINGNYKSFRNFLERVDGKDVNKRCIESLIKSGAFDS 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF------------SDKITLE 941
             G  R +L+ + + + +      K       +IF     T              D+    
Sbjct: 888  MGVYRSRLMNAYEKMMEGISSQRKKSMEGQLSIFDMALNTEDGKKDEKHQLYPEDEDIYP 947

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG----------------IKGYEE 985
                 +  +    E+ +LG Y SGHPL  ++    ++                 +   E 
Sbjct: 948  DIPEYSQKILLSMEKEMLGLYISGHPLSEFEKEFSEVVTLYSKDMVSDADENGEVITVEG 1007

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +     G  + +  ++ S++ K T+  + + +VT  +     E   FP
Sbjct: 1008 NKGLKDGMTVTVGGIITSRKTKTTKNNNLMAFVTLEDLYGTMEIIVFP 1055


>gi|218688059|ref|YP_002396271.1| DNA polymerase III subunit alpha [Escherichia coli ED1a]
 gi|306815217|ref|ZP_07449366.1| DNA polymerase III subunit alpha [Escherichia coli NC101]
 gi|331661255|ref|ZP_08362187.1| DNA polymerase III subunit alpha [Escherichia coli TA206]
 gi|218425623|emb|CAR06409.1| DNA polymerase III alpha subunit [Escherichia coli ED1a]
 gi|305850879|gb|EFM51334.1| DNA polymerase III subunit alpha [Escherichia coli NC101]
 gi|331052297|gb|EGI24336.1| DNA polymerase III subunit alpha [Escherichia coli TA206]
          Length = 1160

 Score = 1128 bits (2919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGT 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLDTELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|189425779|ref|YP_001952956.1| DNA polymerase III subunit alpha [Geobacter lovleyi SZ]
 gi|189422038|gb|ACD96436.1| DNA polymerase III, alpha subunit [Geobacter lovleyi SZ]
          Length = 1179

 Score = 1128 bits (2919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 434/1044 (41%), Positives = 629/1044 (60%), Gaps = 23/1044 (2%)

Query: 3    QYLEKSP--SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +  E SP   FVHL +HS YSLL+GA+ + +++ K    Q PA+AITD  N+F A+EF  
Sbjct: 2    EMPENSPVTPFVHLHLHSQYSLLDGAIRIEDLVSKAKQYQMPALAITDHGNMFGAVEFYL 61

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            K   AGI+PIIGC+L I         ++G +       ++LL    EGY+ L  L S  Y
Sbjct: 62   KCKKAGIKPIIGCELYIAPDSRFSKDSKGIS--DAAYHLILLCQNLEGYKNLSYLTSAGY 119

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
              +      R+  + L E  +EGLI L+    G +         + A +    + +LF D
Sbjct: 120  -KEGFYYRPRVDRALL-EQHSEGLIALSACLKGEVAMQCGRGKMEDALETARWYSQLFPD 177

Query: 181  RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R Y+ +Q +   ++     +++++A    LPLVATN+  +L+ ED +AH+VL+ +     
Sbjct: 178  RYYIEIQENTLPEQDVVNQRLLEVARELNLPLVATNDCHYLNREDAKAHEVLLCIQTGKT 237

Query: 240  VSQKDRPRVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQV-HAPILPRFIE 297
            +S     R + D +  K   EM + F   PEA+ NTV IA RC+  L +      P F  
Sbjct: 238  MSDPTHMRFSADEFYVKTPEEMAAAFHYAPEAIANTVAIAERCNLELPLEKEYYFPHFEP 297

Query: 298  KECDDIQKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             E     K  ++ L  +AV+GLE RL    A+     G   Q Y  RL  EL+ I +MKF
Sbjct: 298  PEG----KTHDDMLEEQAVSGLEERLITIRAKYPDMTGEQVQAYHDRLRTELDCIRQMKF 353

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFLIVADFI WAK+  IPVGPGRGS AGS+ AYA+ ITD+DPL ++LLFERFLNP+R+
Sbjct: 354  PAYFLIVADFINWAKRQGIPVGPGRGSAAGSLVAYAIKITDLDPLPYNLLFERFLNPERI 413

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD D+DFCQD+R++VI YV  KYG ERV QIITFG+++AKA +RDVGRAL M Y  VD
Sbjct: 414  SMPDIDVDFCQDQREKVIEYVVQKYGRERVCQIITFGTMKAKAVVRDVGRALDMAYGDVD 473

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            ++ KLIP+D    +  +AI  + + +E   ADP V +LLE +  LEGL RHA THAAG+V
Sbjct: 474  KIAKLIPDDLKMTIE-KAIKQEPQLKEMAAADPKVAQLLETANCLEGLARHAGTHAAGVV 532

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
            +    L + +P+Y+D ++    TQ++MK++E  GL+KFDFLGLK LT++Q ++  + + +
Sbjct: 533  VAPNQLEEYLPVYKDQKTGGINTQYSMKYVEMVGLVKFDFLGLKNLTVIQNAVRMIREGQ 592

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                D++ +  DD  +Y L+T   T GIFQLESSGM++ L  ++P C ED+IA  +LYRP
Sbjct: 593  NPDFDITRLRDDDQASYDLITAGNTTGIFQLESSGMKEMLVKLKPSCFEDVIAACALYRP 652

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+   +V  +  RK+G++K+V   P ++P+LK+T GVI+YQEQVMQI++ L+GYSL  A
Sbjct: 653  GPLGCGMVDEFIERKHGRQKVVYDLPQLEPILKDTYGVIVYQEQVMQISRSLAGYSLGRA 712

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK    M K+KE F+ GA   G+    A  IF+ +AKFA+YGFNKSH+AAYA
Sbjct: 713  DLLRRAMGKKDPAVMAKEKEPFLEGAKAQGLDIKKAEAIFDQMAKFAEYGFNKSHSAAYA 772

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +I+YQTA++K HYPVEF+AA ++ +MD+ +K+ K   D R+  I+++PP +NT    F V
Sbjct: 773  LIAYQTAYLKAHYPVEFMAALLSCDMDSTDKVLKSISDCREQGIEVLPPDINTSGQSFTV 832

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                + + L A+KGVG      I+EA AD PF  + DFC RVD +++N+RV+E+LV  GA
Sbjct: 833  SGKSMRFGLGAVKGVGGGAVESIIEARADGPFTDIYDFCERVDLRRVNKRVMEALVKCGA 892

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENS 948
             D     R  L+ +LD+     Q  ++ R +   ++F       + +    L      + 
Sbjct: 893  FDSLHKHRAPLMAALDDATTAGQRFQEERDSAQVSLFGDMPTATATRSGRKLPDIEEWHD 952

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              +   E+  LGF  +GHPLD Y   ++++                +R+  +V S ++  
Sbjct: 953  KEKLGYEKEALGFLITGHPLDRYASDIKRLASAEIARLPEFPDNCEVRVCGIVTSLKEII 1012

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T+KG R+G+VT  +   + E   F
Sbjct: 1013 TKKGDRMGFVTIEDLTGQIEITVF 1036


>gi|110640403|ref|YP_668131.1| DNA polymerase III subunit alpha [Escherichia coli 536]
 gi|110341995|gb|ABG68232.1| DNA polymerase III alpha subunit [Escherichia coli 536]
          Length = 1160

 Score = 1128 bits (2919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGT 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++R++VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKREQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|281177409|dbj|BAI53739.1| DNA polymerase III alpha subunit [Escherichia coli SE15]
          Length = 1160

 Score = 1128 bits (2919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1047 (40%), Positives = 621/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA +  LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|320173335|gb|EFW48538.1| DNA polymerase III alpha subunit [Shigella dysenteriae CDC 74-1112]
          Length = 1160

 Score = 1128 bits (2919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ +KA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMASKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|157159649|ref|YP_001456967.1| DNA polymerase III subunit alpha [Escherichia coli HS]
 gi|191167047|ref|ZP_03028869.1| DNA polymerase III, alpha subunit [Escherichia coli B7A]
 gi|194439917|ref|ZP_03071979.1| DNA polymerase III, alpha subunit [Escherichia coli 101-1]
 gi|253774789|ref|YP_003037620.1| DNA polymerase III subunit alpha [Escherichia coli
            'BL21-Gold(DE3)pLysS AG']
 gi|254160303|ref|YP_003043411.1| DNA polymerase III subunit alpha [Escherichia coli B str. REL606]
 gi|331651089|ref|ZP_08352117.1| DNA polymerase III subunit alpha [Escherichia coli M718]
 gi|157065329|gb|ABV04584.1| DNA polymerase III, alpha subunit [Escherichia coli HS]
 gi|190902940|gb|EDV62667.1| DNA polymerase III, alpha subunit [Escherichia coli B7A]
 gi|194421163|gb|EDX37188.1| DNA polymerase III, alpha subunit [Escherichia coli 101-1]
 gi|242376015|emb|CAQ30698.1| DNA polymerase III, alpha subunit, subunit of DNA polymerase III,
            core enzyme and DNA polymerase III, holoenzyme
            [Escherichia coli BL21(DE3)]
 gi|253325833|gb|ACT30435.1| DNA polymerase III, alpha subunit [Escherichia coli
            'BL21-Gold(DE3)pLysS AG']
 gi|253972204|gb|ACT37875.1| DNA polymerase III subunit alpha [Escherichia coli B str. REL606]
 gi|253976413|gb|ACT42083.1| DNA polymerase III subunit alpha [Escherichia coli BL21(DE3)]
 gi|309700392|emb|CBI99680.1| DNA polymerase III alpha subunit [Escherichia coli ETEC H10407]
 gi|323959945|gb|EGB55592.1| DNA polymerase III [Escherichia coli H489]
 gi|331051543|gb|EGI23592.1| DNA polymerase III subunit alpha [Escherichia coli M718]
          Length = 1160

 Score = 1128 bits (2919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|319790471|ref|YP_004152104.1| DNA polymerase III, alpha subunit [Thermovibrio ammonificans HB-1]
 gi|317114973|gb|ADU97463.1| DNA polymerase III, alpha subunit [Thermovibrio ammonificans HB-1]
          Length = 1150

 Score = 1128 bits (2918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1038 (38%), Positives = 620/1038 (59%), Gaps = 22/1038 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   FVHL +HS YS+L+GA+ + +++ K      PA+AITD  N+F++ E  +    
Sbjct: 1    MVRKGDFVHLHLHSQYSILDGAIKVKDLVKKAKELGMPAVAITDHGNMFASYELYKACKE 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I           G+    +   ++LL    +G + L++L +  +    
Sbjct: 61   EGIKPIIGQEFYIAKGSRFDRKKGGEGEKGSY-HLILLAKNDKGLKNLMKLSTIGFTEG- 118

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI L+    G +   +     + A +    +K+LFG+  Y+
Sbjct: 119  FYYKPRIDKEVLEKY-SEGLIALSACIQGEVPLLYLMGKEEEARRAAQWYKELFGEDFYL 177

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ H   ++ +    +++LA   ++ LVATN++ +L++ED+EAHDVL+ +     +S +
Sbjct: 178  ELQYHGIPEQKKANEFLIKLAKELDIELVATNDAHYLNKEDWEAHDVLLCLQTGKKLSDE 237

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILPRFIEKE 299
             R R  + + Y+K+  EM+ +F ++P+A+ NT++IA +    L+       +LP++   E
Sbjct: 238  KRMRFPSREFYVKDAQEMLEVFKEVPQAVFNTLKIAEKVEERLETFENKGYLLPKYEVPE 297

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                    ++ LR  A  GLE R  +  I  G   Q Y +RL+ EL +I  M F GYFLI
Sbjct: 298  G----HTYDSFLRKLAEEGLERRFKEQGITDGEKKQVYYERLNHELKIINDMGFPGYFLI 353

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI WAK+N IPVGPGRGS AGS+ AYA+ ITDIDP+RF+LLFERFLNP+R++MPD D
Sbjct: 354  VWDFINWAKRNGIPVGPGRGSAAGSLVAYAIGITDIDPIRFNLLFERFLNPERVTMPDID 413

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +D CQD RD VI+YV+ KYG ++V QIITFG+++ K  +RDVGR L +P  +VD+L KLI
Sbjct: 414  VDICQDGRDRVIQYVREKYGEDKVCQIITFGTMKTKMVIRDVGRVLGIPPKEVDKLAKLI 473

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P+D        A+      RE    D ++ RL++I+++L+GL R    HAAG+VI    L
Sbjct: 474  PDDAKSV--EDAVERAPEIRELAEKDETIARLIKIAKRLQGLARQTGVHAAGVVIAPETL 531

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            +  +P+ +    D   TQ++M  +E  GL+K DFLGLKTLT++ +++  + +R  V++  
Sbjct: 532  TDYIPLAKSKDGD-ITTQYDMGQVEALGLLKMDFLGLKTLTIIDRTIKLIKERHGVEIVP 590

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD ET+ LL +  T+G+FQLES GMR  ++ ++P   EDIIALV+LYRPGP+++ 
Sbjct: 591  TKLPLDDPETFKLLQSGNTVGVFQLESRGMRNLMKRLKPSVFEDIIALVALYRPGPLNSG 650

Query: 659  V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +   Y  RK+G+E++  I P ++P+LKET G+ IYQEQ+MQIA +L+GYSL EAD+LRRA
Sbjct: 651  MAESYIRRKHGQEEVDYIFPELEPVLKETYGLFIYQEQIMQIANILAGYSLGEADLLRRA 710

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK KE M++Q+  F+S A + G  +     +F+ +AKFA+YGFNKSH+AAY  ++Y T
Sbjct: 711  MGKKKKEIMEEQRSIFVSRAVERGYPREKIEKLFDDIAKFAEYGFNKSHSAAYGFLAYVT 770

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K HYP E  A  M+++ D  ++I KF +D ++  I ++PP +N     F++    I 
Sbjct: 771  AYLKAHYPKELFATMMSIDFDKTDEIVKFIKDCKENGINVLPPDINRSGAYFEIEGEAIR 830

Query: 837  YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            + LA IKGVG   A HI E   +   F  L DFC RVD K +NR+V+E+L+ AGA D  G
Sbjct: 831  FGLAGIKGVGEKAALHIEEVRKEGGEFKDLFDFCRRVDLKVVNRKVIEALIKAGAFDSTG 890

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R   L +LD     AQ ++K+++    ++F   +     ++   +       V+ E E
Sbjct: 891  INRASNLAALDRAMNAAQSIQKSQSKGLLSLFGEAESIV--QVEFPEVEEWPERVKLEYE 948

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            ++ +GFY SGHPL  +K I+  +      E      G  + LA  +   + ++T++G   
Sbjct: 949  RQAIGFYLSGHPLLEFKEIVT-LAFDSTAEKEEWKDGQELTLAGAITDVKLRRTQRGDLW 1007

Query: 1016 GWVTFSEPAKEYEANFFP 1033
              V  ++         FP
Sbjct: 1008 ATVELTDLDGSTSVLVFP 1025


>gi|91209254|ref|YP_539240.1| DNA polymerase III subunit alpha [Escherichia coli UTI89]
 gi|117622469|ref|YP_851382.1| DNA polymerase III subunit alpha [Escherichia coli APEC O1]
 gi|191172778|ref|ZP_03034315.1| DNA polymerase III, alpha subunit [Escherichia coli F11]
 gi|218557125|ref|YP_002390038.1| DNA polymerase III subunit alpha [Escherichia coli S88]
 gi|237704343|ref|ZP_04534824.1| DNA polymerase III subunit alpha [Escherichia sp. 3_2_53FAA]
 gi|331681569|ref|ZP_08382206.1| DNA polymerase III subunit alpha [Escherichia coli H299]
 gi|91070828|gb|ABE05709.1| DNA polymerase III alpha subunit [Escherichia coli UTI89]
 gi|115511593|gb|ABI99667.1| DNA polymerase III alpha subunit [Escherichia coli APEC O1]
 gi|190906928|gb|EDV66530.1| DNA polymerase III, alpha subunit [Escherichia coli F11]
 gi|218363894|emb|CAR01559.1| DNA polymerase III alpha subunit [Escherichia coli S88]
 gi|222032014|emb|CAP74753.1| DNA polymerase III subunit alpha [Escherichia coli LF82]
 gi|226902255|gb|EEH88514.1| DNA polymerase III subunit alpha [Escherichia sp. 3_2_53FAA]
 gi|294489552|gb|ADE88308.1| DNA polymerase III, alpha subunit [Escherichia coli IHE3034]
 gi|307629760|gb|ADN74064.1| DNA polymerase III subunit alpha [Escherichia coli UM146]
 gi|312944792|gb|ADR25619.1| DNA polymerase III subunit alpha [Escherichia coli O83:H1 str. NRG
            857C]
 gi|320196939|gb|EFW71560.1| DNA polymerase III alpha subunit [Escherichia coli WV_060327]
 gi|323950817|gb|EGB46694.1| DNA polymerase III [Escherichia coli H252]
 gi|323955145|gb|EGB50920.1| DNA polymerase III [Escherichia coli H263]
 gi|331081790|gb|EGI52951.1| DNA polymerase III subunit alpha [Escherichia coli H299]
          Length = 1160

 Score = 1128 bits (2918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGT 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|16128177|ref|NP_414726.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
            MG1655]
 gi|89107064|ref|AP_000844.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
            W3110]
 gi|157158983|ref|YP_001461353.1| DNA polymerase III subunit alpha [Escherichia coli E24377A]
 gi|170079820|ref|YP_001729140.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
            DH10B]
 gi|188493055|ref|ZP_03000325.1| DNA polymerase III, alpha subunit [Escherichia coli 53638]
 gi|193063148|ref|ZP_03044239.1| DNA polymerase III, alpha subunit [Escherichia coli E22]
 gi|209917374|ref|YP_002291458.1| DNA polymerase III subunit alpha [Escherichia coli SE11]
 gi|218552765|ref|YP_002385678.1| DNA polymerase III subunit alpha [Escherichia coli IAI1]
 gi|218693649|ref|YP_002401316.1| DNA polymerase III subunit alpha [Escherichia coli 55989]
 gi|238899582|ref|YP_002925378.1| DNA polymerase III alpha subunit [Escherichia coli BW2952]
 gi|256021616|ref|ZP_05435481.1| DNA polymerase III subunit alpha [Shigella sp. D9]
 gi|256025496|ref|ZP_05439361.1| DNA polymerase III subunit alpha [Escherichia sp. 4_1_40B]
 gi|260842416|ref|YP_003220194.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O103:H2 str.
            12009]
 gi|293418069|ref|ZP_06660691.1| DNA polymerase III subunit alpha [Escherichia coli B185]
 gi|307136784|ref|ZP_07496140.1| DNA polymerase III subunit alpha [Escherichia coli H736]
 gi|307311368|ref|ZP_07591010.1| DNA polymerase III, alpha subunit [Escherichia coli W]
 gi|331640638|ref|ZP_08341786.1| DNA polymerase III subunit alpha [Escherichia coli H736]
 gi|331666425|ref|ZP_08367306.1| DNA polymerase III subunit alpha [Escherichia coli TA271]
 gi|331680763|ref|ZP_08381422.1| DNA polymerase III subunit alpha [Escherichia coli H591]
 gi|118794|sp|P10443|DPO3A_ECOLI RecName: Full=DNA polymerase III subunit alpha
 gi|146663|gb|AAC36920.1| DNA polymerase III holoenzyme, alpha subunit [Escherichia coli]
 gi|1552761|gb|AAB08613.1| DNA polymerase III alpha chain [Escherichia coli]
 gi|1786381|gb|AAC73295.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
            MG1655]
 gi|4902925|dbj|BAA77859.1| DNA polymerase III alpha subunit [Escherichia coli str. K12 substr.
            W3110]
 gi|157081013|gb|ABV20721.1| DNA polymerase III, alpha subunit [Escherichia coli E24377A]
 gi|169887655|gb|ACB01362.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
            DH10B]
 gi|188488254|gb|EDU63357.1| DNA polymerase III, alpha subunit [Escherichia coli 53638]
 gi|192931056|gb|EDV83659.1| DNA polymerase III, alpha subunit [Escherichia coli E22]
 gi|209910633|dbj|BAG75707.1| DNA polymerase III alpha subunit [Escherichia coli SE11]
 gi|218350381|emb|CAU96064.1| DNA polymerase III alpha subunit [Escherichia coli 55989]
 gi|218359533|emb|CAQ97071.1| DNA polymerase III alpha subunit [Escherichia coli IAI1]
 gi|238860829|gb|ACR62827.1| DNA polymerase III alpha subunit [Escherichia coli BW2952]
 gi|257757563|dbj|BAI29060.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O103:H2 str.
            12009]
 gi|260450613|gb|ACX41035.1| DNA polymerase III, alpha subunit [Escherichia coli DH1]
 gi|291430787|gb|EFF03785.1| DNA polymerase III subunit alpha [Escherichia coli B185]
 gi|306908347|gb|EFN38845.1| DNA polymerase III, alpha subunit [Escherichia coli W]
 gi|315059402|gb|ADT73729.1| DNA polymerase III alpha subunit [Escherichia coli W]
 gi|315134874|dbj|BAJ42033.1| DNA polymerase III subunit alpha [Escherichia coli DH1]
 gi|320200290|gb|EFW74876.1| DNA polymerase III alpha subunit [Escherichia coli EC4100B]
 gi|323380039|gb|ADX52307.1| DNA polymerase III, alpha subunit [Escherichia coli KO11]
 gi|323939940|gb|EGB36138.1| DNA polymerase III [Escherichia coli E482]
 gi|323945661|gb|EGB41710.1| DNA polymerase III [Escherichia coli H120]
 gi|323970663|gb|EGB65919.1| DNA polymerase III [Escherichia coli TA007]
 gi|324118304|gb|EGC12199.1| DNA polymerase III [Escherichia coli E1167]
 gi|331040384|gb|EGI12591.1| DNA polymerase III subunit alpha [Escherichia coli H736]
 gi|331066636|gb|EGI38513.1| DNA polymerase III subunit alpha [Escherichia coli TA271]
 gi|331072226|gb|EGI43562.1| DNA polymerase III subunit alpha [Escherichia coli H591]
 gi|332105210|gb|EGJ08556.1| DNA polymerase subunit III alpha [Shigella sp. D9]
          Length = 1160

 Score = 1128 bits (2918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|74310804|ref|YP_309223.1| DNA polymerase III subunit alpha [Shigella sonnei Ss046]
 gi|73854281|gb|AAZ86988.1| DNA polymerase III alpha subunit [Shigella sonnei Ss046]
          Length = 1160

 Score = 1128 bits (2918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|302037892|ref|YP_003798214.1| DNA polymerase III subunit alpha [Candidatus Nitrospira defluvii]
 gi|300605956|emb|CBK42289.1| DNA polymerase III, alpha subunit [Candidatus Nitrospira defluvii]
          Length = 1150

 Score = 1128 bits (2918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1036 (41%), Positives = 620/1036 (59%), Gaps = 22/1036 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  FVHL +H+ YSLL+GA  ++ ++ ++ +  QPA+A+TD  N+F A+EF +KA  AG+
Sbjct: 2    ASQFVHLHLHTQYSLLDGANQIDPLMQQVKSFGQPAVAMTDHGNMFGAVEFYRKAKEAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC+  +     L+              ++LL +  +GYQ LI+LVS+ YL      
Sbjct: 62   KPIIGCEAYMAPGSRLEKN--SHLAHNDYYHLILLATNLKGYQNLIKLVSKAYLEG-FYY 118

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
              R+    LQ+   EGLI L+G  SG +           A K    ++++F  D  Y+ L
Sbjct: 119  KPRMDKEILQQ-HHEGLIGLSGCLSGEVAYLIGQKDLAGATKAAGEYREIFGKDNYYLEL 177

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q +   + R     ++++    ++PL  TN+  +L +ED   HD+++ +     ++  +R
Sbjct: 178  QANGLEHQRIANDGLLEIHKKLDIPLAGTNDCHYLKKEDSRPHDLMLCLQTGKTINDPNR 237

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             +   D  Y+K+  + +S F ++P A+ NTV+IA  C+  L ++   LP+F   E     
Sbjct: 238  MKFDTDQLYVKSTEQALSEFKEMPTAVSNTVKIAEACTLDLALNKTYLPQFKVPEG---- 293

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               E+ +   A+ GL  RL +           Y+ RL  E+ VI  M F+GYFLIV D I
Sbjct: 294  YTRESYVEQLALEGLAARLKE--RPSSIPEIAYQVRLKEEVAVICSMGFAGYFLIVWDII 351

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+   IPVGPGRGS AGS+ AYAL ITD+DPL +SLLFERFLNP+R+S+PD D+DFC 
Sbjct: 352  KFARSRGIPVGPGRGSAAGSLVAYALRITDLDPLVYSLLFERFLNPERVSLPDIDMDFCM 411

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRRDEVI YV +KYG + VAQIITFG+++AKAA+RDVGR L+MPY++VDR+ KL+P+D  
Sbjct: 412  DRRDEVINYVIHKYGEDHVAQIITFGTMKAKAAIRDVGRVLEMPYAEVDRIAKLVPDDLK 471

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  + R +E    D  V  L+ ++Q LEGL RHASTHAAGIVI D+PL++ VP
Sbjct: 472  MTLD-KALEQEPRLKELVDKDVKVKELMSVAQSLEGLARHASTHAAGIVISDQPLTEHVP 530

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL---SLI 601
            +Y+  + +  VTQ++M  +EK GL+KFDFLGLKTLT++ ++   + +            +
Sbjct: 531  LYKGPKDE-IVTQYSMGDVEKIGLVKFDFLGLKTLTMIHRAETLVNEVHPDQPPLRVEQL 589

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            PFDD +T+ LL++  T G+FQLESSGMR  L G++PD  EDIIA+++LYRPGP+D I  +
Sbjct: 590  PFDDPDTFALLSSGKTTGVFQLESSGMRDLLMGLKPDRFEDIIAIIALYRPGPMDLIPDF 649

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK GK  I    P ++P+LK+T GVI+YQEQVM IA  ++G+SL +AD+LRRAMGKK 
Sbjct: 650  IKRKQGKIPIAYEMPELEPILKDTYGVIVYQEQVMAIANKVAGFSLGQADILRRAMGKKK 709

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             EEM+K + +F+ GA +  IS+  A  ++EL+ KFA YGFNKSHAAAYAV+ YQTA++K 
Sbjct: 710  PEEMEKLRVQFLEGAKQKKISEKKADKLYELIQKFAGYGFNKSHAAAYAVVCYQTAYLKA 769

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP EF+AA MT +M N +KI  +  + R   I ++PP VN    +F V D  I + LAA
Sbjct: 770  HYPTEFMAALMTTDMGNADKIVGYFTECRGLGIPVLPPDVNQSQKNFAVVDQSIRFGLAA 829

Query: 842  IKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK VG      I+E   +  PF S  D   RVD +KLN+R++E L+ AGA D  G  R Q
Sbjct: 830  IKNVGEGAVEAIIEVRNETGPFRSFFDLFRRVDLRKLNKRMMEGLIKAGAFDSMGGRRSQ 889

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS---DKITLEKFSVENSSVRFENEQR 957
             L  LD        ++K R     +IF  +        D+  L      N     + E+ 
Sbjct: 890  YLAVLDQAMDEGMSIQKERALGQTSIFGDDTVGMPQQLDEPALPDVPEWNQGELLKYERE 949

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            + GFY S HPL  Y+  ++        +      G  ++L  ++ + +   T+KG R+ +
Sbjct: 950  LTGFYISAHPLARYEAAIQLFANTTTMQIPDVPDGREVKLCGIITAVKSMLTKKGDRMAY 1009

Query: 1018 VTFSEPAKEYEANFFP 1033
            +T  +     E   FP
Sbjct: 1010 ITLEDLHGLVEVIAFP 1025


>gi|293408276|ref|ZP_06652116.1| DNA polymerase III subunit alpha [Escherichia coli B354]
 gi|291472527|gb|EFF15009.1| DNA polymerase III subunit alpha [Escherichia coli B354]
          Length = 1162

 Score = 1128 bits (2918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 4    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 63

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 64   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 113

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 114  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 172

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 173  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 232

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 233  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 288

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 289  -STEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 348  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 408  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 467

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 468  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 526

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 527  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 586

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 587  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 646

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 647  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 706

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 707  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 766

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 767  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 826

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 827  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 886

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 887  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 946

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 947  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1006

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1007 VMVTKRGNRIGICTLDDRSGRLEVMLF 1033


>gi|194435013|ref|ZP_03067254.1| DNA polymerase III, alpha subunit [Shigella dysenteriae 1012]
 gi|194416749|gb|EDX32877.1| DNA polymerase III, alpha subunit [Shigella dysenteriae 1012]
          Length = 1160

 Score = 1128 bits (2917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1047 (40%), Positives = 618/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L     GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAVNNTGYQNLTLLISKAYQRGYGP 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L   A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKSAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL N  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGNALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|15799866|ref|NP_285878.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 EDL933]
 gi|15829440|ref|NP_308213.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            Sakai]
 gi|168752166|ref|ZP_02777188.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4113]
 gi|168758707|ref|ZP_02783714.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4401]
 gi|168764953|ref|ZP_02789960.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4501]
 gi|168769951|ref|ZP_02794958.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4486]
 gi|168777708|ref|ZP_02802715.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4196]
 gi|168782076|ref|ZP_02807083.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4076]
 gi|168789293|ref|ZP_02814300.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC869]
 gi|168802470|ref|ZP_02827477.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC508]
 gi|195939880|ref|ZP_03085262.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            EC4024]
 gi|208806614|ref|ZP_03248951.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4206]
 gi|208812760|ref|ZP_03254089.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4045]
 gi|208820436|ref|ZP_03260756.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4042]
 gi|209398477|ref|YP_002268792.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4115]
 gi|217326041|ref|ZP_03442125.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            TW14588]
 gi|254791317|ref|YP_003076154.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            TW14359]
 gi|261226938|ref|ZP_05941219.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
            FRIK2000]
 gi|261255342|ref|ZP_05947875.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
            FRIK966]
 gi|81848972|sp|Q8X8X5|DPO3A_ECO57 RecName: Full=DNA polymerase III subunit alpha
 gi|12512912|gb|AAG54486.1|AE005194_7 DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EDL933]
 gi|13359642|dbj|BAB33609.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
            Sakai]
 gi|187767109|gb|EDU30953.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4196]
 gi|188013925|gb|EDU52047.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4113]
 gi|189000426|gb|EDU69412.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4076]
 gi|189354514|gb|EDU72933.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4401]
 gi|189361079|gb|EDU79498.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4486]
 gi|189365137|gb|EDU83553.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4501]
 gi|189371108|gb|EDU89524.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC869]
 gi|189375552|gb|EDU93968.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC508]
 gi|208726415|gb|EDZ76016.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4206]
 gi|208734037|gb|EDZ82724.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4045]
 gi|208740559|gb|EDZ88241.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4042]
 gi|209159877|gb|ACI37310.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4115]
 gi|209745704|gb|ACI71159.1| DNA polymerase III alpha subunit [Escherichia coli]
 gi|209745706|gb|ACI71160.1| DNA polymerase III alpha subunit [Escherichia coli]
 gi|209745708|gb|ACI71161.1| DNA polymerase III alpha subunit [Escherichia coli]
 gi|209745712|gb|ACI71163.1| DNA polymerase III alpha subunit [Escherichia coli]
 gi|217322262|gb|EEC30686.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            TW14588]
 gi|254590717|gb|ACT70078.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
            TW14359]
 gi|320190290|gb|EFW64940.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
            EC1212]
 gi|320644760|gb|EFX13804.1| DNA polymerase III subunit alpha [Escherichia coli O157:H- str.
            493-89]
 gi|320652916|gb|EFX21154.1| DNA polymerase III subunit alpha [Escherichia coli O157:H- str. H
            2687]
 gi|320658304|gb|EFX26033.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str.
            3256-97 TW 07815]
 gi|320668927|gb|EFX35722.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            LSU-61]
 gi|326339761|gb|EGD63569.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. 1044]
 gi|326345095|gb|EGD68838.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. 1125]
          Length = 1160

 Score = 1128 bits (2917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|293476841|ref|ZP_06665249.1| DNA polymerase III subunit alpha [Escherichia coli B088]
 gi|291321294|gb|EFE60736.1| DNA polymerase III subunit alpha [Escherichia coli B088]
          Length = 1162

 Score = 1128 bits (2917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 4    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 63

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 64   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 113

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 114  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 172

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 173  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 232

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 233  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 288

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 289  -STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 348  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 408  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 467

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 468  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 526

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 527  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 586

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 587  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 646

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 647  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 706

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 707  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 766

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 767  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 826

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 827  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 886

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 887  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 946

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 947  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1006

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1007 VMVTKRGNRIGICTLDDRSGRLEVMLF 1033


>gi|254037603|ref|ZP_04871680.1| DNA polymerase III alpha subunit [Escherichia sp. 1_1_43]
 gi|226840709|gb|EEH72711.1| DNA polymerase III alpha subunit [Escherichia sp. 1_1_43]
          Length = 1160

 Score = 1128 bits (2917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 621/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H ++ P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHEILKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|260866333|ref|YP_003232735.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O111:H- str.
            11128]
 gi|257762689|dbj|BAI34184.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O111:H- str.
            11128]
          Length = 1160

 Score = 1128 bits (2917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGV 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|187733784|ref|YP_001878986.1| DNA polymerase III subunit alpha [Shigella boydii CDC 3083-94]
 gi|187430776|gb|ACD10050.1| DNA polymerase III, alpha subunit [Shigella boydii CDC 3083-94]
          Length = 1160

 Score = 1128 bits (2917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S +  + +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVGECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRLDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|258627365|ref|ZP_05722149.1| DNA polymerase III subunit alpha [Vibrio mimicus VM603]
 gi|258580403|gb|EEW05368.1| DNA polymerase III subunit alpha [Vibrio mimicus VM603]
          Length = 1159

 Score = 1128 bits (2917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/1046 (41%), Positives = 619/1046 (59%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL+VHS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G
Sbjct: 2    SDPKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG             T Q +     +  + +L     GY+ L  L+S+ YL    +
Sbjct: 62   IKPIIGA----------DFTLQSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL E   EGLI+L+GG SG I RA    + Q  EK L  ++  F D  Y+ L
Sbjct: 112  HQPVIDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        ++LA  +ELP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 171  VRTGRADEESYLHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL++ +EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  MAIEDFLVMKSREGLEERLEFLFPNPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +   +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA   D  F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ S+D+  + A    +       ++F          +    +    
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMFGVLTDAPEEVEQKYTQVPEW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ + 
Sbjct: 945  PEKVRLEGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   +
Sbjct: 1005 MTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|323935024|gb|EGB31397.1| DNA polymerase III [Escherichia coli E1520]
          Length = 1160

 Score = 1128 bits (2917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNNGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|39996502|ref|NP_952453.1| DNA polymerase III subunit alpha [Geobacter sulfurreducens PCA]
 gi|39983383|gb|AAR34776.1| DNA polymerase III, alpha subunit [Geobacter sulfurreducens PCA]
 gi|298505519|gb|ADI84242.1| DNA polymerase III, alpha subunit [Geobacter sulfurreducens KN400]
          Length = 1155

 Score = 1128 bits (2917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1031 (41%), Positives = 620/1031 (60%), Gaps = 22/1031 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA+ L +++ K+ +   PA+AITD   +F A+EF  K     ++P
Sbjct: 2    SFVHLHLHTQYSLLDGAIRLGDLVKKVKSHDMPAVAITDHGAMFGAMEFYLKCKDKDVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG ++ I          +G         ++LL     GY+ L +LVS  +  +      
Sbjct: 62   VIGAEVYIAPGSRFVKEARGGEAGAGY-HLLLLCENMTGYRNLSKLVSIGF-KEGFYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L E   EGLI L+    G +      +    A      +  LF DR Y+ LQ +
Sbjct: 120  RIDKEVLAE-NAEGLICLSACLKGEVAYLCERDRVAEAVDVARWYADLFPDRYYIELQEN 178

Query: 190  RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ + ++ ++++A    LPLVATN+  +L+ ED  AH+VL+ +     ++   R R 
Sbjct: 179  GLVEQDKANRGLLEVAREVGLPLVATNDCHYLNREDARAHEVLLCIQTGKTMNDPSRMRF 238

Query: 249  TPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            + D +  K   EM + F   PEA+ NTV+IA RC           PRF       +    
Sbjct: 239  SVDEFYVKTPEEMAAAFHYAPEAISNTVKIAERCDLSFDFKTYHFPRFEPP----VGLSL 294

Query: 308  ENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +  L   A  GLE RL    A+ +       Q Y  RL  EL  I +M F GYFLIVADF
Sbjct: 295  DQMLEEAARTGLESRLTAIRAKHSSMTAEQEQAYWDRLAIELACIKQMGFPGYFLIVADF 354

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I WAK + IPVGPGRGS AGS+ AYA+ ITD+DP+ ++LLFERFLNP+R+SMPD D+DFC
Sbjct: 355  INWAKDHGIPVGPGRGSAAGSLVAYAIRITDLDPIPYNLLFERFLNPERISMPDIDVDFC 414

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRR+EVI+YV  KYG ++V QIITFG++ A+A +RDVGRAL M Y +VDR+ KL+P   
Sbjct: 415  QDRREEVIQYVTEKYGRDKVCQIITFGTMSARAVIRDVGRALDMTYGEVDRIAKLVPEVL 474

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +AIA + +  EA  ADP V  LLE++ +LEGL RHASTHAAG+V+    L Q  
Sbjct: 475  GITLE-KAIAQEPKLNEAAEADPRVKELLEVALRLEGLARHASTHAAGVVVAPDVLEQFC 533

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
            P+Y+D +S    TQ++MK++EK GL+KFDFLGLK LT++  ++  + A +    D++ + 
Sbjct: 534  PVYKDQKSGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIFNAVRHIRADKKPDFDIAALR 593

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD E+Y LL    T G+FQLESSGMR+ L  ++P C EDIIA+ +LYRPGP+ + +V  
Sbjct: 594  DDDEESYKLLQAGNTTGVFQLESSGMRELLRKLKPSCFEDIIAVCALYRPGPLGSGMVDD 653

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + +RK+G++K+V   P ++P+LK+T GVI+YQEQVMQIA+ L+GYSL  AD+LRRAMGKK
Sbjct: 654  FIDRKHGRKKVVYDLPQLEPILKDTYGVIVYQEQVMQIARSLAGYSLGGADLLRRAMGKK 713

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               EM KQ++ F+ GA  NGI    A  IF+L+AKFA+YGFNKSH+AAYA+++YQTA++K
Sbjct: 714  DPAEMAKQRDIFLEGAKNNGIDLQKAGAIFDLMAKFAEYGFNKSHSAAYALVAYQTAYLK 773

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEF+AA +T +M N +K+ K   D R+  I+++PP +N   + F+V  N I + L 
Sbjct: 774  AHYPVEFMAALLTEDMANTDKVVKNIADCREMGIEVLPPDINASDLSFRVLGNSIRFGLG 833

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            A+K VG +    I+EA  D PF  + +FC RVD +K+N+RV+ESL+  GA D  G  R Q
Sbjct: 834  AVKNVGESAIEAIIEARGDGPFKDIFEFCERVDLRKVNKRVVESLIKCGAFDSTGGRRSQ 893

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-----GTFSDKITLEKFSVENSSVRFENE 955
            L  +L++     Q +++ + +   ++F  E+     G    K+ L      +       E
Sbjct: 894  LTAALEDAMSLGQKIQQEKESAQVSLFGAEEIVRTNGNGKGKVQLPDLPEWDDKFLLAQE 953

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LGF+ +GHPL  ++  +R+               + +++  +V + ++  T+KG R+
Sbjct: 954  KEALGFFITGHPLGRHEKDIRRFTTADTATLEERADKSEVKICGIVATMKELMTKKGDRM 1013

Query: 1016 GWVTFSEPAKE 1026
             + T  +    
Sbjct: 1014 AFATLEDLVGS 1024


>gi|170682325|ref|YP_001742312.1| DNA polymerase III subunit alpha [Escherichia coli SMS-3-5]
 gi|170520043|gb|ACB18221.1| DNA polymerase III, alpha subunit [Escherichia coli SMS-3-5]
          Length = 1160

 Score = 1128 bits (2917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 621/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA +  LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGIRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|291281006|ref|YP_003497824.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str.
            CB9615]
 gi|209745710|gb|ACI71162.1| DNA polymerase III alpha subunit [Escherichia coli]
 gi|290760879|gb|ADD54840.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str.
            CB9615]
 gi|320663614|gb|EFX30898.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str. USDA
            5905]
          Length = 1160

 Score = 1127 bits (2916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F         
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGNM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|260853394|ref|YP_003227285.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O26:H11 str.
            11368]
 gi|257752043|dbj|BAI23545.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O26:H11 str.
            11368]
          Length = 1160

 Score = 1127 bits (2916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +  + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNRALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|320639990|gb|EFX09575.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            G5101]
          Length = 1160

 Score = 1127 bits (2916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTVPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|258621011|ref|ZP_05716045.1| DNA polymerase III subunit alpha [Vibrio mimicus VM573]
 gi|258586399|gb|EEW11114.1| DNA polymerase III subunit alpha [Vibrio mimicus VM573]
          Length = 1159

 Score = 1127 bits (2916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/1046 (41%), Positives = 619/1046 (59%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL+VHS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G
Sbjct: 2    SDPKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG             T Q +     +  + +L     GY+ L  L+S+ YL    +
Sbjct: 62   IKPIIGA----------DFTLQSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL E   EGLI+L+GG SG I RA    + Q  EK L  ++  F D  Y+ L
Sbjct: 112  HQPVIDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        ++LA  +ELP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 171  VRTGRADEESYLHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL++ +EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  MAIEDFLVMKSREGLEERLEFLFPDPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +   +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDTRSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA   D  F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ S+D+  + A    +       ++F          +    +    
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMFGVLTDAPEEVEQKYTQVPEW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ + 
Sbjct: 945  PEKVRLEGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   +
Sbjct: 1005 MTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|331645327|ref|ZP_08346438.1| DNA polymerase III subunit alpha [Escherichia coli M605]
 gi|330910034|gb|EGH38544.1| DNA polymerase 3 alpha subunit [Escherichia coli AA86]
 gi|331046084|gb|EGI18203.1| DNA polymerase III subunit alpha [Escherichia coli M605]
          Length = 1160

 Score = 1127 bits (2916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1047 (40%), Positives = 621/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGP 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA +  LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAESRSLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|218698604|ref|YP_002406233.1| DNA polymerase III subunit alpha [Escherichia coli IAI39]
 gi|218368590|emb|CAR16327.1| DNA polymerase III alpha subunit [Escherichia coli IAI39]
          Length = 1160

 Score = 1127 bits (2916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGIRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|194428253|ref|ZP_03060795.1| DNA polymerase III, alpha subunit [Escherichia coli B171]
 gi|194413628|gb|EDX29908.1| DNA polymerase III, alpha subunit [Escherichia coli B171]
          Length = 1160

 Score = 1127 bits (2916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEATYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|193067721|ref|ZP_03048688.1| DNA polymerase III, alpha subunit [Escherichia coli E110019]
 gi|192959133|gb|EDV89569.1| DNA polymerase III, alpha subunit [Escherichia coli E110019]
          Length = 1160

 Score = 1127 bits (2916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHENLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|262170786|ref|ZP_06038464.1| DNA polymerase III alpha subunit [Vibrio mimicus MB-451]
 gi|261891862|gb|EEY37848.1| DNA polymerase III alpha subunit [Vibrio mimicus MB-451]
          Length = 1159

 Score = 1127 bits (2916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/1046 (41%), Positives = 619/1046 (59%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL+VHS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G
Sbjct: 2    SDPKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG             T Q +     +  + +L     GY+ L  L+S+ YL    +
Sbjct: 62   IKPIIGA----------DFTLQSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL E   EGLI+L+GG SG I RA    + Q  EK L  ++  F D  Y+ L
Sbjct: 112  HQPVIDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        ++LA  +ELP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 171  VRTGRADEESYLHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL++ +EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  MAIEDFLVMKSREGLEERLEFLFPDLEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +   +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA   D  F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ S+D+  + A    +       ++F          +    +    
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMFGVLTDAPEEVEQKYTQVPEW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ + 
Sbjct: 945  PEKVRLEGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   +
Sbjct: 1005 MTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|75676051|ref|YP_318472.1| DNA polymerase III subunit alpha [Nitrobacter winogradskyi Nb-255]
 gi|74420921|gb|ABA05120.1| DNA polymerase III, alpha subunit [Nitrobacter winogradskyi Nb-255]
          Length = 1168

 Score = 1127 bits (2915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 530/1040 (50%), Positives = 709/1040 (68%), Gaps = 15/1040 (1%)

Query: 1    LTQYLEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
            +TQ    +P+ FVHL VHS+YSLL+G++ +  + +   AD QPA+A+TDT+N+F ALEFS
Sbjct: 1    MTQKTLAAPAGFVHLHVHSAYSLLKGSIKIQKLAELARADHQPALALTDTDNMFGALEFS 60

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
             K    GIQPI+GC+L +D  D          P      IVLL +   GY+ L+ L SR 
Sbjct: 61   DKVAGLGIQPIVGCELAVDFTDQDANARNALPP----ARIVLLATREAGYRNLMRLNSRA 116

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +L      S  +   WL++   EGLI LTGG  GP+ +AF  +   +A  R      +FG
Sbjct: 117  FLETPEHCSPHVNWEWLRD-ENEGLIALTGGPEGPVAQAFNADQPALATARCDRLAGIFG 175

Query: 180  DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            DRLYV LQRH    +R  E  ++ LAY   LPLVATN   F + +DYEAHD L+ +A   
Sbjct: 176  DRLYVELQRHGLDKERRVEGALIDLAYAKGLPLVATNEPYFATSDDYEAHDALLCIAGGR 235

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI-- 296
            +V++ DR ++TPDH  K R+EM  +F+D+PEAL +T+EIA RC+F  +   PILP F   
Sbjct: 236  LVAETDREQLTPDHRFKTRAEMAVLFADIPEALSSTMEIAERCAFRPRTRKPILPHFTVA 295

Query: 297  -EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
             +    D + +E  ELR +A  GL  RLA   ++ G   QDY  RLDFEL+VI RM ++G
Sbjct: 296  SDAAAADGKNDEAAELRRQAQEGLAKRLAVHGVSTGMTEQDYSARLDFELDVITRMNYAG 355

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI+ AK   IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SM
Sbjct: 356  YFLIVADFIKHAKSKGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERISM 415

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ+RR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L
Sbjct: 416  PDFDIDFCQERRGEVIDYVQKRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKL 475

Query: 476  CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KL+P +PA PVSL+ AI  + + +  R  DP V R  +I+Q+LEGL RHASTHAAGIVI
Sbjct: 476  TKLVPQNPAAPVSLKQAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVI 535

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
            GDRPLS+LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QRG+
Sbjct: 536  GDRPLSELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRGI 595

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VDL+ +P DD  +Y +LT    +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP
Sbjct: 596  DVDLATLPLDDAASYQMLTQGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGP 655

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + NI  Y  RK+G+E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LR
Sbjct: 656  MANIPTYCARKHGEEEAEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLR 715

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKKI+ EM+KQ+  F++G+  NG+ +  A  IFELLAKFADYGFNKSHAAAYA++SY
Sbjct: 716  RAMGKKIRSEMEKQRAIFVAGSVNNGVPRGQAETIFELLAKFADYGFNKSHAAAYALVSY 775

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA+MK H+PVEFLAASMTL+M N +K+ +F  +A++  I++  PS+N     F+V +  
Sbjct: 776  QTAYMKAHFPVEFLAASMTLDMSNTDKLSEFRAEAQRLGIKVEAPSINRSGATFEVKEGV 835

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I Y+LAA+KGVG      I+EA     F SL DF +RV  + +N+RV+ESL  AGA +  
Sbjct: 836  ICYALAALKGVGAHAVEQIVEARKAGMFTSLADFAARVPPRAINKRVIESLAAAGAFEAL 895

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R ++    + I    Q   +       ++F       +  I L +      + R   
Sbjct: 896  EPNRARVFAGAEAILAACQRSHEATMIGQNDMFGGLAD--APDIMLPRAEPWLPADRLRR 953

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKG 1012
            E   +GF+ SGHPLD Y   L+++ ++ + E S A   G    ++AA VVS+ +++T+ G
Sbjct: 954  EYEAVGFFLSGHPLDDYATALKRLRVQSWVEFSRAVKSGATAGKVAATVVSRMERRTKTG 1013

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +++G +  S+P+  +EA  F
Sbjct: 1014 NKMGIIGLSDPSGHFEAVLF 1033


>gi|316933919|ref|YP_004108901.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris DX-1]
 gi|315601633|gb|ADU44168.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris DX-1]
          Length = 1151

 Score = 1127 bits (2915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 537/1034 (51%), Positives = 705/1034 (68%), Gaps = 14/1034 (1%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +  FVHL VHS+YSLL+G++ +  + +   AD+QPA+A+TDT+N+F  LEFS K   +G
Sbjct: 2    SNAGFVHLHVHSAYSLLKGSMKIAKLAELAKADRQPALALTDTDNMFGGLEFSDKLSGSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPI+G +L ID  D    +  G    P    IVLL +  +GY+ L+ L SR +L     
Sbjct: 62   IQPIVGLELGIDFGDQDPNSRHGALATPA--RIVLLAAREQGYRSLMRLNSRAFLETPVN 119

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q   I L WL +  T+G+I LTGG  GPI  A       +A +R    ++ FGDRLYV L
Sbjct: 120  QVPHIKLDWL-DGETDGVIALTGGPDGPISLAMLT-DPALAAQRCERLQQAFGDRLYVEL 177

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH    +R  E  ++ LAY   LPLVATN   F S EDYEAHD L+ +A   ++++ DR
Sbjct: 178  QRHGTEAERRAEGGLIDLAYDKGLPLVATNEPHFASTEDYEAHDALLCIASGKLIAETDR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC----D 301
             + TPDH  K R+EM  +F+DLPEAL +TVEIA+RC++      PILP F          
Sbjct: 238  VQFTPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGAGVSDAV 297

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +    E  ELR +A  GL  RL+   ++ G   +DY +RL FEL+VI RMK++GYFLIV+
Sbjct: 298  EAAAAEAAELRRQAELGLAKRLSVHGLSPGTTEEDYNKRLAFELDVITRMKYAGYFLIVS 357

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFDID
Sbjct: 358  DFIKWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFDID 417

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P 
Sbjct: 418  FCQDRRGEVIEYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQ 477

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA P++L+ AI  + + + AR  DP V R  +I+QKLEGL RHASTHAAGIVIGDRPLS
Sbjct: 478  NPAAPITLKQAIEGEPKLQAARDEDPIVARAFDIAQKLEGLTRHASTHAAGIVIGDRPLS 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
             LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT L  ++  L QR + VDL  
Sbjct: 538  DLVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRDIHVDLHT 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  +Y +L     +G+FQ+ES+GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  
Sbjct: 598  LPIDDAPSYQMLARGDVVGVFQVESAGMRRALIDMRPDRFEDIIALVALYRPGPMANIPT 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMGKK
Sbjct: 658  YCARKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+ EMDKQ+  F+ GA KNG++K  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+MK
Sbjct: 718  IRAEMDKQRAIFVEGAVKNGVAKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMTLE+ N +K+ +F  +A++  I++  PSVN     F+VG N IYY+L 
Sbjct: 778  AHYPVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVGPNTIYYALG 837

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             +KGVG    + I+EA  DKPF SL DF +RV+ + +NRRV+E L  AGA DC   +R  
Sbjct: 838  GLKGVGLQAVQQIVEARGDKPFASLADFAARVNPRAINRRVVECLAAAGAFDCLNSNRAA 897

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +    D I    Q   +  T+   ++F          I L +      S R   E   +G
Sbjct: 898  VFAGADAIVAACQRNHEAATSGQNDMFGGLSDV--PSIILPQLDAWLPSERLRREYDAIG 955

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            F+ SGHPLD Y   L+++ ++ + E   A   G    ++AA VVS+ +++T+ G+++G +
Sbjct: 956  FFLSGHPLDDYATALKRLRVQSWNEFCKAVKSGATAGKVAATVVSRMERRTKTGNKMGII 1015

Query: 1019 TFSEPAKEYEANFF 1032
              S+P   +EA  F
Sbjct: 1016 GLSDPTGHFEAVLF 1029


>gi|256004510|ref|ZP_05429489.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360]
 gi|255991515|gb|EEU01618.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360]
 gi|316940028|gb|ADU74062.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 1313]
          Length = 1181

 Score = 1127 bits (2915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1068 (35%), Positives = 597/1068 (55%), Gaps = 62/1068 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA  + +++ +       +IAITD   ++  ++F ++A   GI+PI
Sbjct: 5    FVHLHVHTEYSLLDGANRIKDLIRRTKELGMDSIAITDHGVMYGVVDFYKEAVNNGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++               +       +VLL     GY+ L+++VS  +         R
Sbjct: 65   LGCEIYTAKGSRFDKQGGWDSD---PGHMVLLAKNNTGYKNLMKIVSIGFTEG-FYYKPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            + +  L++  +EGLI ++   SG I +A   N+ + A++  L    +F  D  Y+ LQ +
Sbjct: 121  VDMEVLEKY-SEGLIAMSACLSGDIPKAILNNNYEKAKELALKLNSIFGQDNFYLELQMN 179

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     Q+++L+    +PLVATN++ +L  ED  AH++L+ +     ++ +DR R 
Sbjct: 180  GIEEQNIVNQQLIKLSRETGIPLVATNDAHYLRREDARAHEILLCIQTGKSINDEDRMRF 239

Query: 249  TPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            + D +  K+  EM+S+F ++PEA+ NTV IA  C+  L+ +   LP+F   +     K+ 
Sbjct: 240  SSDDFYIKSPEEMISLFRNIPEAISNTVRIADMCNVELEFNKLHLPKFDVPDG----KDP 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     G E         K    ++   RL++EL+VI +M +  YFLIV+DFI++A
Sbjct: 296  FEYLRALCYEGFER-----IYGKDNRDEEKINRLEYELSVIKQMGYVDYFLIVSDFIRYA 350

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+  I VGPGRGS AGS  AY L IT+IDPL+++LLFERFLNP+R+SMPD DIDFC +RR
Sbjct: 351  KEKGIMVGPGRGSAAGSFVAYCLGITNIDPLKYNLLFERFLNPERISMPDIDIDFCFERR 410

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RVAQIITFG++ A+A +RDVGRAL + Y +VD + K+IP      +
Sbjct: 411  QEVIDYVVEKYGKDRVAQIITFGTMAARAVIRDVGRALDISYGEVDAIAKMIPFQIGMSI 470

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   R+    D  V  L++ ++ LEG+ RHASTHAAG+VI   PL++ VP+ R
Sbjct: 471  E-KAMELNPELRQRYNDDERVKELIDTAKLLEGMPRHASTHAAGVVISREPLTEYVPLQR 529

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                D   TQF M  +E+ GL+K DFLGL+TLT+++ ++  + +   + V +  +  DD 
Sbjct: 530  --SEDSITTQFPMGILEELGLLKMDFLGLRTLTVIRDAVALIKKNHNIDVKIDELQMDDP 587

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              + L+    T G+FQLES+GM Q ++ +QP  +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 588  NVFKLIGEGRTAGVFQLESAGMTQFMKELQPASLEDIIAGISLYRPGPMDQIPRYLRNKN 647

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E +   HPL++ +L  T G ++YQEQVMQI + L+GYS+  +D++RRAM KK    M+
Sbjct: 648  NPELVKYDHPLLENILNVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMAKKKVSIME 707

Query: 727  KQKERFISGA------------SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI G              +NG+ +  A  IF+ +  FA Y FNKSHAAAYAVI+Y
Sbjct: 708  QERKNFIYGIDDDNGNIIVKGAVRNGVDEETANKIFDEMMDFASYAFNKSHAAAYAVIAY 767

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTAW+K +YPVEF+AA +   M + +KI ++  + R+  I+++PP +N   V F V + +
Sbjct: 768  QTAWLKCYYPVEFIAALLNSFMGSSDKISQYVHECRKLGIEVLPPDINESDVRFTVVNGK 827

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + LAA+K VG    R I++    +  + S  +F  RVD K +N+R +ESL+ +GA D 
Sbjct: 828  IRFGLAAVKNVGENAVRSIIDERNINGNYKSFRNFLERVDGKDVNKRCIESLIKSGAFDS 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF------------SDKITLE 941
             G  R +L+ + + + +      K       +IF     T              D+    
Sbjct: 888  MGVYRSRLMNAYEKMMEGISSQRKKSMEGQLSIFDMALNTEDGKKDEKHQLYPEDEDIYP 947

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG----------------IKGYEE 985
                 +  +    E+ +LG Y SGHPL  ++    ++                 +   E 
Sbjct: 948  DIPEYSQKILLSMEKEMLGLYISGHPLSEFEKEFSEVVTLYSKDMVSDADENGEVITVEG 1007

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +     G  + +  ++ S++ K T+  + + +VT  +     E   FP
Sbjct: 1008 NKGLKDGMTVTVGGIITSRKTKTTKNNNLMAFVTLEDLYGTMEIIVFP 1055


>gi|331661558|ref|ZP_08362482.1| DNA polymerase III subunit alpha [Escherichia coli TA143]
 gi|331061473|gb|EGI33436.1| DNA polymerase III subunit alpha [Escherichia coli TA143]
          Length = 1160

 Score = 1127 bits (2915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVMRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|170021463|ref|YP_001726417.1| DNA polymerase III subunit alpha [Escherichia coli ATCC 8739]
 gi|169756391|gb|ACA79090.1| DNA polymerase III, alpha subunit [Escherichia coli ATCC 8739]
          Length = 1160

 Score = 1127 bits (2915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD++I +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQLIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|331671690|ref|ZP_08372488.1| DNA polymerase III subunit alpha [Escherichia coli TA280]
 gi|331071535|gb|EGI42892.1| DNA polymerase III subunit alpha [Escherichia coli TA280]
          Length = 1160

 Score = 1127 bits (2915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVMRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|192291642|ref|YP_001992247.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris TIE-1]
 gi|192285391|gb|ACF01772.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris TIE-1]
          Length = 1151

 Score = 1127 bits (2915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 535/1034 (51%), Positives = 709/1034 (68%), Gaps = 14/1034 (1%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +  FVHL VHS+YSLL+G++ +  + +   AD+QPA+A+TDT+N+F  LEFS K    G
Sbjct: 2    SNAGFVHLHVHSAYSLLKGSMKIAKLAELAKADRQPALALTDTDNMFGGLEFSDKLSGYG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPI+G +L ID  D    +  G    P    IVLL +  +GY+ L+ L SR +L     
Sbjct: 62   IQPIVGLELGIDFGDQDPNSRHGALATPA--RIVLLAAREQGYRSLMRLNSRAFLETPVN 119

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q   + L WL E  T+G+I LTGG  GPI  A       +A +R    ++ FGDRLYV L
Sbjct: 120  QVPHVKLEWL-EGETDGVIALTGGPDGPISLAMLT-DPALAAQRCERLQQAFGDRLYVEL 177

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH    +R  E  ++ LAY   LPLVATN   F S EDYEAHD L+ +A   ++++ DR
Sbjct: 178  QRHGTEAERRAEGGLIDLAYDKGLPLVATNEPHFASTEDYEAHDALLCIASGKLIAETDR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK----ECD 301
             + TPDH  K R+EM  +F+DLPEAL +TVEIA+RC++      PILP F       +  
Sbjct: 238  VQFTPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVSDAA 297

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +    E  ELR +A  GL  RL+   ++ G   +DY +RL FEL+VI RMK++GYFLIV+
Sbjct: 298  EAAAAEAAELRRQAEQGLAKRLSVHGLSPGTTEEDYNKRLAFELDVITRMKYAGYFLIVS 357

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFDID
Sbjct: 358  DFIKWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFDID 417

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR EVI YVQ++YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P 
Sbjct: 418  FCQDRRGEVIEYVQHRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQ 477

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA P++L QAI  + + + AR  DP V R  +I+QKLEGL RHASTHAAGIVIGDRPLS
Sbjct: 478  NPAAPITLKQAIEGEPKLQAARDEDPIVARAFDIAQKLEGLTRHASTHAAGIVIGDRPLS 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
             LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT L  ++  L QR + VDL  
Sbjct: 538  DLVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRDIHVDLHT 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  +Y +L     +G+FQ+ES+GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  
Sbjct: 598  LPIDDAPSYQMLARGDVVGVFQVESAGMRRALIDMRPDRFEDIIALVALYRPGPMANIPT 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMGKK
Sbjct: 658  YCARKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+ EMDKQ+  F+ GA KNG++K  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+MK
Sbjct: 718  IRAEMDKQRAIFVEGAVKNGVAKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMTLE+ N +K+ +F  +A++  I++  PSVN     F+VG N I+Y+LA
Sbjct: 778  AHYPVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVGPNTIFYALA 837

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             +KGVG    + I+EA  D+PF SL DF +RV+ + +N+RV+E L  AGA DC   +R +
Sbjct: 838  GLKGVGMQAVQQIVEARGDRPFTSLADFSARVNPRAINKRVIECLAAAGAFDCLDSNRAR 897

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +    D I    Q   +  T+   ++F       +  I L +      + R   E   +G
Sbjct: 898  VFGGADAIVAACQRNHEAATSGQNDMFGGLSD--APSIILPQLEPWLPAERLRREYDAIG 955

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            F+ SGHPLD Y   L+++ ++ + E   A   G    ++AA VVS+ +++T+ G+++G +
Sbjct: 956  FFLSGHPLDDYATALKRLRVQSWAEFCKAVKSGATAGKVAATVVSRMERRTKTGNKMGII 1015

Query: 1019 TFSEPAKEYEANFF 1032
              S+P   +EA  F
Sbjct: 1016 GLSDPTGHFEAVLF 1029


>gi|218547639|ref|YP_002381430.1| DNA polymerase III subunit alpha [Escherichia fergusonii ATCC 35469]
 gi|218355180|emb|CAQ87787.1| DNA polymerase III alpha subunit [Escherichia fergusonii ATCC 35469]
 gi|323975648|gb|EGB70744.1| DNA polymerase III [Escherichia coli TW10509]
 gi|324112405|gb|EGC06382.1| DNA polymerase III [Escherichia fergusonii B253]
          Length = 1160

 Score = 1127 bits (2915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|320180909|gb|EFW55831.1| DNA polymerase III alpha subunit [Shigella boydii ATCC 9905]
          Length = 1160

 Score = 1127 bits (2915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 618/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L     GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAVNNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHSVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL N  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGNALKAAGQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|218703438|ref|YP_002410957.1| DNA polymerase III subunit alpha [Escherichia coli UMN026]
 gi|218430535|emb|CAR11401.1| DNA polymerase III alpha subunit [Escherichia coli UMN026]
 gi|284919959|emb|CBG33014.1| DNA polymerase III alpha subunit [Escherichia coli 042]
          Length = 1160

 Score = 1127 bits (2915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1047 (40%), Positives = 621/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA +  LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVMRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|283783968|ref|YP_003363833.1| DNA polymerase III alpha subunit [Citrobacter rodentium ICC168]
 gi|282947422|emb|CBG86967.1| DNA polymerase III alpha subunit [Citrobacter rodentium ICC168]
          Length = 1160

 Score = 1126 bits (2914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F     +AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHSAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G    +          Q +     +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFHV----------QSELMGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R     +S + E+ +  +++ F DR ++ L
Sbjct: 112  AGPVIDRDWLIEL-NEGLILLSGGRMGDVGRGLLRGNSALVEECVAFYEQHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSADFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y++   EM  +FSD+PEALEN+VEIARRC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRTEEEMCELFSDIPEALENSVEIARRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDFLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D +   PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEQGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGARKNGIDGELAIKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I+EA  +   F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|82775574|ref|YP_401921.1| DNA polymerase III subunit alpha [Shigella dysenteriae Sd197]
 gi|81239722|gb|ABB60432.1| DNA polymerase III, alpha subunit [Shigella dysenteriae Sd197]
          Length = 1160

 Score = 1126 bits (2914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  +M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEDMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVSLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|262166322|ref|ZP_06034059.1| DNA polymerase III alpha subunit [Vibrio mimicus VM223]
 gi|262026038|gb|EEY44706.1| DNA polymerase III alpha subunit [Vibrio mimicus VM223]
          Length = 1159

 Score = 1126 bits (2914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/1044 (41%), Positives = 619/1044 (59%), Gaps = 37/1044 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   GI+
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG             T Q +     +  + +L     GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGA----------DFTLQSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E   EGLI+L+GG SG I RA    + Q  EK L  ++  F D  Y+ L R
Sbjct: 114  PVIDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLELVR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        ++LA  +ELP+VATN  +F++EE +EAH++ +A+     +    RP 
Sbjct: 173  TGRADEESYLHFALELADQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPK 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL++ +EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +        
Sbjct: 233  NYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPTE-----GMA 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +F
Sbjct: 288  IEDFLVMKSREGLEERLEFLFPDPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P DP
Sbjct: 408  MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +   +E   AD  V  L++  + LEG  R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V +
Sbjct: 527  PIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQPPVRI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + 
Sbjct: 587  EAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F V 
Sbjct: 767  VSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVD 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            DN  I Y + AIKGVG      I+EA   D  F  L DFC+R+D KK+N+RV+E L+ AG
Sbjct: 827  DNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLILAG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            ALD  G  R  ++ S+D+  + A    +       ++F          +    +      
Sbjct: 887  ALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMFGVLTDAPEEVEQKYTQVPEWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ +   
Sbjct: 947  KVRLEGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMT 1006

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G+RIG +T  + +   E   +
Sbjct: 1007 TKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|215485345|ref|YP_002327776.1| DNA polymerase III subunit alpha [Escherichia coli O127:H6 str.
            E2348/69]
 gi|215263417|emb|CAS07737.1| DNA polymerase III, alpha subunit [Escherichia coli O127:H6 str.
            E2348/69]
          Length = 1160

 Score = 1126 bits (2914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1047 (40%), Positives = 618/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RL         +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLVFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|293403253|ref|ZP_06647350.1| DNA polymerase III alpha subunit [Escherichia coli FVEC1412]
 gi|298378789|ref|ZP_06988673.1| DNA polymerase III subunit alpha [Escherichia coli FVEC1302]
 gi|291430168|gb|EFF03182.1| DNA polymerase III alpha subunit [Escherichia coli FVEC1412]
 gi|298281123|gb|EFI22624.1| DNA polymerase III subunit alpha [Escherichia coli FVEC1302]
          Length = 1162

 Score = 1126 bits (2914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1047 (40%), Positives = 621/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 4    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 63

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 64   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 113

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 114  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 172

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA +  LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 173  IRTGRPDEESYLHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 232

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 233  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 288

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 289  -STEDYLVMRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVM 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 348  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 408  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 467

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 468  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 526

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 527  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 586

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 587  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 646

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 647  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 706

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 707  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 766

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 767  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 826

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 827  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 886

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 887  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 946

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 947  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1006

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1007 VMVTKRGNRIGICTLDDRSGRLEVMLF 1033


>gi|156935300|ref|YP_001439216.1| DNA polymerase III subunit alpha [Cronobacter sakazakii ATCC BAA-894]
 gi|156533554|gb|ABU78380.1| hypothetical protein ESA_03157 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1160

 Score = 1126 bits (2913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 434/1045 (41%), Positives = 616/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA AITD  NL   ++F   A   GI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPAFAITDFTNLCGLVKFYGGAHGVGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   ++          Q +        I +L +   GYQ L  L+SR Y    G   
Sbjct: 64   PIIGADFNM----------QCELLGDDFSHITVLAANNTGYQNLTLLISRAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+G EGLI+L+GG  G + +     ++ +AE+ L  +++ F DR Y+ L R
Sbjct: 114  PWIDQQWLAELG-EGLILLSGGRQGDVGKCLLRGNNVMAEQALAFYQEHFPDRYYLELVR 172

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D  R     V LA    +P+VATN+  F+   D++AH++ +A+     +    RP 
Sbjct: 173  TGRPDEERYLHAAVALAEEKGIPVVATNDVRFIEPGDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL+   EM  +FSDLPEALEN+VEIARRC+  +++    LP+F   +       
Sbjct: 233  HYSPQQYLRTEEEMCELFSDLPEALENSVEIARRCNVTVRLGEYFLPKFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVMKSKEGLEERLEFLFPDPEIRAQKRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + + +E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAFEAEPQLQEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 527  PLYCDEMGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKQGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA  NGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSIFEDGAKNNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA   D  F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F    +     + +         
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A ++++ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTERGKVTTAAGLIIAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|262404579|ref|ZP_06081134.1| DNA polymerase III alpha subunit [Vibrio sp. RC586]
 gi|262349611|gb|EEY98749.1| DNA polymerase III alpha subunit [Vibrio sp. RC586]
          Length = 1159

 Score = 1126 bits (2913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1046 (41%), Positives = 618/1046 (59%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL+VHS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G
Sbjct: 2    SDPKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG             T Q +     +  + +L     GY+ L  L+S+ YL    +
Sbjct: 62   VKPIIGA----------DFTLQSEEFGDELTKLTVLAKNNIGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  +WL E   EGLI+L+GG SG I RA    + Q  EK L  ++  F D  Y+ L
Sbjct: 112  HQPVLDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        ++LA  +ELP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 171  VRTGRADEESYLHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL++ +EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  MAIEDFLVMKSREGLEERLEFLFPNPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +   +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA   D  F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ S+D+  + A    +       ++F          +    +    
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ + 
Sbjct: 945  PEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   +
Sbjct: 1005 MTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|24111619|ref|NP_706129.1| DNA polymerase III subunit alpha [Shigella flexneri 2a str. 301]
 gi|30061741|ref|NP_835912.1| DNA polymerase III subunit alpha [Shigella flexneri 2a str. 2457T]
 gi|24050388|gb|AAN41836.1| DNA polymerase III, alpha subunit [Shigella flexneri 2a str. 301]
 gi|30039983|gb|AAP15717.1| DNA polymerase III, alpha subunit [Shigella flexneri 2a str. 2457T]
 gi|281599539|gb|ADA72523.1| DNA polymerase III, alpha subunit [Shigella flexneri 2002017]
          Length = 1160

 Score = 1126 bits (2912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLALLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKSVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|26246130|ref|NP_752169.1| DNA polymerase III subunit alpha [Escherichia coli CFT073]
 gi|227884903|ref|ZP_04002708.1| DNA polymerase III subunit alpha [Escherichia coli 83972]
 gi|81846737|sp|Q8FL05|DPO3A_ECOL6 RecName: Full=DNA polymerase III subunit alpha
 gi|26106527|gb|AAN78713.1|AE016755_213 DNA polymerase III alpha subunit [Escherichia coli CFT073]
 gi|227838041|gb|EEJ48507.1| DNA polymerase III subunit alpha [Escherichia coli 83972]
 gi|307552034|gb|ADN44809.1| DNA polymerase III alpha subunit [Escherichia coli ABU 83972]
 gi|323964923|gb|EGB60389.1| DNA polymerase III [Escherichia coli M863]
 gi|327255163|gb|EGE66766.1| DNA polymerase III subunit alpha [Escherichia coli STEC_7v]
          Length = 1160

 Score = 1125 bits (2911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNIGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|114707392|ref|ZP_01440289.1| DNA polymerase III subunit alpha [Fulvimarina pelagi HTCC2506]
 gi|114537273|gb|EAU40400.1| DNA polymerase III subunit alpha [Fulvimarina pelagi HTCC2506]
          Length = 1151

 Score = 1125 bits (2911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 581/1038 (55%), Positives = 755/1038 (72%), Gaps = 12/1038 (1%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +T+  ++  SF+HL+ HS++SLLEGAL L+ I+    AD  PA+ I DTNNLF ALEFS+
Sbjct: 1    MTETTDRL-SFIHLRSHSAFSLLEGALKLDQIIKFALADGAPAVGIADTNNLFGALEFSE 59

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            KA  +G+QPIIGCQLD+D +D     N  +    +   +VL+ S+  GY  L+E+VS+ Y
Sbjct: 60   KAAKSGLQPIIGCQLDVDFEDG---ENDREKAALSPAPVVLIASSDIGYANLVEIVSKAY 116

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L  +      +  SWL ++  EG+I LTGG SGPI  A       +AE RL   K  +GD
Sbjct: 117  LGHEANVRPHVKASWLDDLA-EGVIALTGGPSGPIGLAIAAERRPIAEARLDRLKTAYGD 175

Query: 181  RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            RLYV LQR  GY R  E+  ++LAY   LP+VATN   F   EDY+AHD L+AVA + +V
Sbjct: 176  RLYVELQRQHGYSRRLEAGTLELAYGCNLPIVATNEPYFYCAEDYDAHDALLAVASNRLV 235

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            S +DR R++ DH LKN++EM  +F+DLPEALENT+EIARRC+F  +V  PILPRF   + 
Sbjct: 236  SHEDRRRLSRDHCLKNQNEMAELFADLPEALENTIEIARRCNFRPKVRQPILPRFAGADA 295

Query: 301  DDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            D    E  E  ELR +A  GL+ R+ +  IA G+  ++YR+RLDFEL +I RM+F GYFL
Sbjct: 296  DPADAERAEVAELRRQAFEGLDRRMEKLGIADGHTVEEYRERLDFELTIIERMQFPGYFL 355

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDF
Sbjct: 356  IVADFIKWAKDHGIPVGPGRGSGAGSLVAYALTITDLDPLRFSLLFERFLNPERVSMPDF 415

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFCQDRR+EVIRYVQ KYG E+V QIITFG+LQA+A LRDVGR L+M Y  VD+LCKL
Sbjct: 416  DIDFCQDRREEVIRYVQEKYGREQVGQIITFGTLQARAVLRDVGRVLEMSYGHVDKLCKL 475

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +P +PA+PV+L QA+ ++ R +EAR  +  VDRL+ IS KLEGLYRHASTHAAGIVIGDR
Sbjct: 476  VPANPANPVTLAQALEEEPRLKEAREKEEIVDRLISISLKLEGLYRHASTHAAGIVIGDR 535

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKV 596
            PL +LVPMYRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT LQ ++ ++   +  K+
Sbjct: 536  PLQKLVPMYRDPRSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLQTAVSYVELNKQTKI 595

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DLS IP DD  TY +LT   T+G+FQLES GMR+AL GM+PD  EDIIALV+LYRPGP++
Sbjct: 596  DLSAIPLDDKPTYDMLTRGETVGVFQLESVGMRKALIGMRPDVFEDIIALVALYRPGPME 655

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            NI  YN RK+G+E+   IH  I P+LKETQGVIIYQEQVMQIAQ+LSGYSL EAD+LRRA
Sbjct: 656  NIPTYNARKHGEEEPDFIHEKIAPILKETQGVIIYQEQVMQIAQVLSGYSLGEADMLRRA 715

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKKI+ EMDKQ+ RF+ GA + GI K  A  IF+LLAKFA+YGFNKSHAAAYA+++YQT
Sbjct: 716  MGKKIRAEMDKQRVRFVDGAVERGIQKKQADMIFDLLAKFANYGFNKSHAAAYALVAYQT 775

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K +YP EFLAASMTL+  N EK+ +F  DAR+  I+++PPSV T    F+V  N+I+
Sbjct: 776  AYLKANYPAEFLAASMTLDAGNTEKLNEFRLDARRLGIEVVPPSVQTSFRKFEVSGNKIF 835

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            Y+LAAIKGVG     HI+E   DKPF SLEDFC RVD K +N+R  E L+ AGA DCFG+
Sbjct: 836  YALAAIKGVGEHAVDHIVEKRGDKPFKSLEDFCGRVDPKIINKRTFEFLIAAGAFDCFGH 895

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R  L+ +++ +  YA  + ++RT+   +IF     +  + + L    +  +S +   E 
Sbjct: 896  ERAVLMSNVERMMGYAARIAESRTSGQADIFGAFS-SEPEPLRLGPAPLWTASEKLLREF 954

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSR 1014
            + +GF+ S HPLD Y+  L+++ ++ + ++VA ++   + +RLA  V S+Q++KTR G +
Sbjct: 955  QAIGFHLSAHPLDEYRSTLKRLRVQSHADAVAAVKRGASAVRLAGTVTSRQERKTRSGGK 1014

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            IG +  S+ + +YE   F
Sbjct: 1015 IGIIQMSDASAQYEVVLF 1032


>gi|39935989|ref|NP_948265.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris CGA009]
 gi|39649843|emb|CAE28365.1| DNA polymerase III alpha subunit [Rhodopseudomonas palustris CGA009]
          Length = 1151

 Score = 1125 bits (2910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 534/1034 (51%), Positives = 709/1034 (68%), Gaps = 14/1034 (1%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +  FVHL VHS+YSLL+G++ +  + +   AD+QPA+A+TDT+N+F  LEFS K    G
Sbjct: 2    SNAGFVHLHVHSAYSLLKGSMKIAKLAELAKADRQPALALTDTDNMFGGLEFSDKLSGYG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPI+G +L ID  D    +  G    P    IVLL +  +GY+ L+ L SR +L     
Sbjct: 62   IQPIVGLELGIDFGDQDPNSRHGALATPA--RIVLLAAREQGYRSLMRLNSRAFLETPVN 119

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q   + L WL E  T+G++ LTGG  GPI  A       +A +R    ++ FGDRLYV L
Sbjct: 120  QVPHVKLEWL-EGETDGVVALTGGPDGPISLAMLT-DPALAAQRCERLQQAFGDRLYVEL 177

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH    +R  E  ++ LAY   LPLVATN   F S EDYEAHD L+ +A   ++++ DR
Sbjct: 178  QRHGTEAERRAEGGLIDLAYDKGLPLVATNEPHFASTEDYEAHDALLCIASGKLIAETDR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK----ECD 301
             + TPDH  K R+EM  +F+DLPEAL +TVEIA+RC++      PILP F       +  
Sbjct: 238  IQFTPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVSDAA 297

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +    E  ELR +A  GL  RL+   ++ G   +DY +RL FEL+VI RMK++GYFLIV+
Sbjct: 298  EAAAAEAAELRRQAEQGLAKRLSVHGLSPGTTEEDYNKRLAFELDVITRMKYAGYFLIVS 357

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFDID
Sbjct: 358  DFIKWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFDID 417

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR EVI YVQ++YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P 
Sbjct: 418  FCQDRRGEVIEYVQHRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQ 477

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA P++L QAI  + + + AR  DP V R  +I+QKLEGL RHASTHAAGIVIGDRPLS
Sbjct: 478  NPAAPITLKQAIEGEPKLQAARDEDPIVARAFDIAQKLEGLTRHASTHAAGIVIGDRPLS 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
             LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT L  ++  L QR + VDL  
Sbjct: 538  DLVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRDIHVDLHT 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  +Y +L     +G+FQ+ES+GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  
Sbjct: 598  LPIDDAPSYQMLARGDVVGVFQVESAGMRRALIDMRPDRFEDIIALVALYRPGPMANIPT 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMGKK
Sbjct: 658  YCARKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+ EMDKQ+  F+ GA KNG++K  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+MK
Sbjct: 718  IRAEMDKQRAIFVEGAVKNGVAKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEFLAASMTLE+ N +K+ +F  +A++  I++  PSVN     F+VG N I+Y+LA
Sbjct: 778  AHYPVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVGPNTIFYALA 837

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             +KGVG    + I+EA  D+PF SL DF +RV+ + +N+RV+E L  AGA DC   +R +
Sbjct: 838  GLKGVGMQAVQQIVEARGDRPFTSLADFSARVNPRAINKRVIECLAAAGAFDCLDSNRAR 897

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +    D I    Q   +  T+   ++F       +  I L +      + R   E   +G
Sbjct: 898  VFGGADAIVAACQRNHEAATSGQNDMFGGLSD--APSIILPQLEPWLPAERLRREYDAIG 955

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            F+ SGHPLD Y   L+++ ++ + E   A   G    ++AA VVS+ +++T+ G+++G +
Sbjct: 956  FFLSGHPLDDYATALKRLRVQSWAEFCKAVKSGATAGKVAATVVSRMERRTKTGNKMGII 1015

Query: 1019 TFSEPAKEYEANFF 1032
              S+P   +EA  F
Sbjct: 1016 GLSDPTGHFEAVLF 1029


>gi|183179456|ref|ZP_02957667.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-3]
 gi|183012867|gb|EDT88167.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-3]
          Length = 1164

 Score = 1125 bits (2909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1046 (40%), Positives = 615/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G
Sbjct: 7    SDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG 66

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +
Sbjct: 67   VKPIIGA----------DFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQ 116

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L
Sbjct: 117  HQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLEL 175

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 176  IRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 235

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 236  PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----G 290

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 291  MAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 350

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 351  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 410

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 411  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 470

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +   +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 471  DPGMTLE-KAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 529

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 530  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 589

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 590  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 649

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 650  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 709

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 710  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 769

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 770  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 829

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 830  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 889

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ S+D+  + A    +       ++F          +    +    
Sbjct: 890  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEW 949

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ + 
Sbjct: 950  PEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARV 1009

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   +
Sbjct: 1010 MTTKRGTRIGLMTLDDRSGRMEVMLY 1035


>gi|170768453|ref|ZP_02902906.1| DNA polymerase III, alpha subunit [Escherichia albertii TW07627]
 gi|170122557|gb|EDS91488.1| DNA polymerase III, alpha subunit [Escherichia albertii TW07627]
          Length = 1160

 Score = 1125 bits (2909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q +     +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QSEPLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y  RLD EL VI +M F GYFLIV 
Sbjct: 287  -STEDYLIKRAKEGLEERLAFLFPDEEERLKRRPEYDVRLDTELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +VV+ +
Sbjct: 945  PDQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|327484762|gb|AEA79169.1| DNA polymerase III alpha subunit [Vibrio cholerae LMA3894-4]
          Length = 1157

 Score = 1125 bits (2909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1046 (40%), Positives = 616/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G
Sbjct: 2    SDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +
Sbjct: 62   VKPIIGA----------DFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L
Sbjct: 112  HQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 171  IRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 231  PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  MAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +   +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA   D  F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ S+D+  + A    +       ++F          +    +    
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ + 
Sbjct: 945  PEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   +
Sbjct: 1005 MTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|229522191|ref|ZP_04411608.1| DNA polymerase III alpha subunit [Vibrio cholerae TM 11079-80]
 gi|229341116|gb|EEO06121.1| DNA polymerase III alpha subunit [Vibrio cholerae TM 11079-80]
          Length = 1159

 Score = 1125 bits (2909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1046 (40%), Positives = 615/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G
Sbjct: 2    SDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +
Sbjct: 62   VKPIIGA----------DFTLQSEEFGDDLTKLTLLAKNNVGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L
Sbjct: 112  HQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 171  IRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 231  PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  MAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +   +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ S+D+  + A    +       ++F          +    +    
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ + 
Sbjct: 945  PEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   +
Sbjct: 1005 MTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|15642243|ref|NP_231876.1| DNA polymerase III subunit alpha [Vibrio cholerae O1 biovar El Tor
            str. N16961]
 gi|121586281|ref|ZP_01676071.1| DNA polymerase III, alpha subunit [Vibrio cholerae 2740-80]
 gi|121726522|ref|ZP_01679771.1| DNA polymerase III, alpha subunit [Vibrio cholerae V52]
 gi|147675187|ref|YP_001217760.1| DNA polymerase III subunit alpha [Vibrio cholerae O395]
 gi|153817071|ref|ZP_01969738.1| DNA polymerase III, alpha subunit [Vibrio cholerae NCTC 8457]
 gi|153820865|ref|ZP_01973532.1| DNA polymerase III, alpha subunit [Vibrio cholerae B33]
 gi|153825312|ref|ZP_01977979.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-2]
 gi|227082369|ref|YP_002810920.1| DNA polymerase III, alpha subunit [Vibrio cholerae M66-2]
 gi|254286447|ref|ZP_04961404.1| DNA polymerase III, alpha subunit [Vibrio cholerae AM-19226]
 gi|254849375|ref|ZP_05238725.1| DNA polymerase III subunit alpha [Vibrio cholerae MO10]
 gi|9656805|gb|AAF95389.1| DNA polymerase III, alpha subunit [Vibrio cholerae O1 biovar El Tor
            str. N16961]
 gi|121549547|gb|EAX59573.1| DNA polymerase III, alpha subunit [Vibrio cholerae 2740-80]
 gi|121630975|gb|EAX63354.1| DNA polymerase III, alpha subunit [Vibrio cholerae V52]
 gi|126512339|gb|EAZ74933.1| DNA polymerase III, alpha subunit [Vibrio cholerae NCTC 8457]
 gi|126521657|gb|EAZ78880.1| DNA polymerase III, alpha subunit [Vibrio cholerae B33]
 gi|146317070|gb|ABQ21609.1| DNA polymerase III, alpha subunit [Vibrio cholerae O395]
 gi|149740996|gb|EDM55065.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-2]
 gi|150423396|gb|EDN15340.1| DNA polymerase III, alpha subunit [Vibrio cholerae AM-19226]
 gi|227010257|gb|ACP06469.1| DNA polymerase III, alpha subunit [Vibrio cholerae M66-2]
 gi|227014141|gb|ACP10351.1| DNA polymerase III, alpha subunit [Vibrio cholerae O395]
 gi|254845080|gb|EET23494.1| DNA polymerase III subunit alpha [Vibrio cholerae MO10]
          Length = 1164

 Score = 1125 bits (2909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1046 (40%), Positives = 615/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G
Sbjct: 7    SDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG 66

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +
Sbjct: 67   VKPIIGA----------DFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQ 116

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L
Sbjct: 117  HQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLEL 175

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 176  IRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 235

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 236  PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----G 290

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 291  MAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 350

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 351  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 410

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 411  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 470

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +   +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 471  DPGMTLE-KAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 529

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 530  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 589

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 590  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 649

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 650  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 709

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 710  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 769

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 770  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 829

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 830  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 889

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ S+D+  + A    +       ++F          +    +    
Sbjct: 890  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEW 949

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ + 
Sbjct: 950  PEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARV 1009

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   +
Sbjct: 1010 MTTKRGTRIGLMTLDDRSGRMEVMLY 1035


>gi|229507681|ref|ZP_04397186.1| DNA polymerase III alpha subunit [Vibrio cholerae BX 330286]
 gi|229512124|ref|ZP_04401603.1| DNA polymerase III alpha subunit [Vibrio cholerae B33]
 gi|229513887|ref|ZP_04403349.1| DNA polymerase III alpha subunit [Vibrio cholerae TMA 21]
 gi|229519259|ref|ZP_04408702.1| DNA polymerase III alpha subunit [Vibrio cholerae RC9]
 gi|229607185|ref|YP_002877833.1| DNA polymerase III subunit alpha [Vibrio cholerae MJ-1236]
 gi|255747058|ref|ZP_05421003.1| DNA polymerase III alpha subunit [Vibrio cholera CIRS 101]
 gi|262167733|ref|ZP_06035435.1| DNA polymerase III alpha subunit [Vibrio cholerae RC27]
 gi|262189888|ref|ZP_06048212.1| DNA polymerase III alpha subunit [Vibrio cholerae CT 5369-93]
 gi|14195659|sp|P52022|DPO3A_VIBCH RecName: Full=DNA polymerase III subunit alpha
 gi|229343948|gb|EEO08923.1| DNA polymerase III alpha subunit [Vibrio cholerae RC9]
 gi|229349068|gb|EEO14025.1| DNA polymerase III alpha subunit [Vibrio cholerae TMA 21]
 gi|229352089|gb|EEO17030.1| DNA polymerase III alpha subunit [Vibrio cholerae B33]
 gi|229355186|gb|EEO20107.1| DNA polymerase III alpha subunit [Vibrio cholerae BX 330286]
 gi|229369840|gb|ACQ60263.1| DNA polymerase III alpha subunit [Vibrio cholerae MJ-1236]
 gi|255735460|gb|EET90860.1| DNA polymerase III alpha subunit [Vibrio cholera CIRS 101]
 gi|262023798|gb|EEY42497.1| DNA polymerase III alpha subunit [Vibrio cholerae RC27]
 gi|262034232|gb|EEY52648.1| DNA polymerase III alpha subunit [Vibrio cholerae CT 5369-93]
          Length = 1159

 Score = 1124 bits (2908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1046 (40%), Positives = 615/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G
Sbjct: 2    SDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +
Sbjct: 62   VKPIIGA----------DFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L
Sbjct: 112  HQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 171  IRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 231  PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  MAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +   +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ S+D+  + A    +       ++F          +    +    
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ + 
Sbjct: 945  PEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   +
Sbjct: 1005 MTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|229524247|ref|ZP_04413652.1| DNA polymerase III alpha subunit [Vibrio cholerae bv. albensis VL426]
 gi|229337828|gb|EEO02845.1| DNA polymerase III alpha subunit [Vibrio cholerae bv. albensis VL426]
          Length = 1159

 Score = 1124 bits (2908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1046 (40%), Positives = 615/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G
Sbjct: 2    SDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +
Sbjct: 62   VKPIIGA----------DFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L
Sbjct: 112  HQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 171  IRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 231  PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  MAIEDFLVMKSREGLEERLEFLFPDPDVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +   +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ S+D+  + A    +       ++F          +    +    
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ + 
Sbjct: 945  PEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   +
Sbjct: 1005 MTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|148255875|ref|YP_001240460.1| DNA polymerase III subunit alpha [Bradyrhizobium sp. BTAi1]
 gi|146408048|gb|ABQ36554.1| DNA polymerase III, alpha subunit [Bradyrhizobium sp. BTAi1]
          Length = 1173

 Score = 1124 bits (2908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 530/1036 (51%), Positives = 707/1036 (68%), Gaps = 14/1036 (1%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S  FVHL VHS+YSLL+G++ +  + +   AD+QPA+A+TDT+N+F ALEFS K    G
Sbjct: 2    SSAGFVHLHVHSAYSLLKGSIKIGKLGELAKADRQPALALTDTDNMFGALEFSDKMAGYG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPI GC+L ID  D +    +          IVLL +  EGY+ L+ L SR +L     
Sbjct: 62   IQPIAGCELAIDFGD-MDPNARNAAAVAQPSRIVLLAAREEGYRHLMRLNSRAFLDTPTH 120

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q+  I   WLQE G +GLI LTGG  GPI  A   + + +A +R      LFGDRLY+ L
Sbjct: 121  QAPHIKFEWLQE-GVDGLIALTGGPDGPISLAIQHDMAALAGQRCERLASLFGDRLYIEL 179

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH    +R  E  ++ +AY   LPLVATN   F + +DYEAHD L+ +A   +++  DR
Sbjct: 180  QRHGTDRERRVEGGLIDIAYGKGLPLVATNEPYFATADDYEAHDALLCIAGGHLIADTDR 239

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             ++TPDH  K R+EM  +F+D+PEAL +TVEIA RCS+  +   PILP F          
Sbjct: 240  VQLTPDHRFKTRAEMAVLFADIPEALASTVEIAERCSYRPRTRKPILPFFTVGAGSGADA 299

Query: 306  EEENE-----LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +        L+ +A  GL  RL    +A G   +DY++RL FEL+VI RMK++GYFLIV
Sbjct: 300  VDAASAEAAELKRQAEEGLARRLKVHGMAPGMTEEDYQKRLAFELDVITRMKYAGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+WAK + IPVGPGRGSGAGS+ A+ LTITD+DP+RF+LLFERFLNP+R+SMPDFDI
Sbjct: 360  SDFIKWAKAHGIPVGPGRGSGAGSLVAWVLTITDLDPMRFALLFERFLNPERVSMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQDRR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P
Sbjct: 420  DFCQDRRGEVISYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVP 479

Query: 481  NDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +PA PV+L A I  + + +  R  DP V R  +I+ +LEGL RHASTHAAGIVIGDRPL
Sbjct: 480  QNPAAPVTLAAAIEGEPKLQAFRDEDPVVARAFDIAMRLEGLTRHASTHAAGIVIGDRPL 539

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            S+LVPMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QR V VDL+
Sbjct: 540  SELVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRDVHVDLA 599

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P DD  +Y +L     +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI 
Sbjct: 600  TLPIDDAASYQMLARGDVVGVFQVESQGMRRALIDMRPDRFEDIIALVALYRPGPMANIP 659

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  RK+G+E+   +HP+++P+LKET GVIIYQEQVMQ+AQ +SGYSL EAD+LRRAMGK
Sbjct: 660  TYCARKHGEEEAEYLHPILEPILKETFGVIIYQEQVMQVAQQMSGYSLGEADLLRRAMGK 719

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KI+ EMDKQ+ RF+ GA KNG+SK  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+M
Sbjct: 720  KIRAEMDKQRVRFVEGAVKNGVSKDQADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYM 779

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYPVEF+AASMTL+++N +K+ +F  +A++  I++ PPS+N     F+V  N I+Y+L
Sbjct: 780  KAHYPVEFIAASMTLDLNNTDKLSEFRAEAQRLGIKVEPPSINRSGPTFEVSGNTIFYAL 839

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            AA+KGVG      I+EA     PF SL DF SRV+ + +N+R++E+L  AGA D    +R
Sbjct: 840  AALKGVGPQAIEMIVEARNKGGPFTSLADFASRVNPRAINKRIIETLAAAGAFDVLDKNR 899

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             ++    D I    Q   +  T+   ++F +     +  I L        + R   E   
Sbjct: 900  ARVFAGADAIVAACQRAHEAATSGQNDMFGNAAD--APAIILPNVENWLPAERLRREYDA 957

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAMVVSKQQKKTRKGSRIG 1016
            +GF+ SGHPLD Y   L+++ ++ + E    ++ G    ++AA VVS+ +++T+ G+++G
Sbjct: 958  IGFFLSGHPLDDYAAALKRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGNKMG 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
             +  S+P   +EA  F
Sbjct: 1018 IMGLSDPTGHFEAVLF 1033


>gi|153213783|ref|ZP_01948991.1| DNA polymerase III, alpha subunit [Vibrio cholerae 1587]
 gi|124115707|gb|EAY34527.1| DNA polymerase III, alpha subunit [Vibrio cholerae 1587]
          Length = 1164

 Score = 1124 bits (2908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1046 (40%), Positives = 615/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G
Sbjct: 7    SDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG 66

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +
Sbjct: 67   VKPIIGA----------DFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQ 116

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L
Sbjct: 117  HQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLEL 175

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 176  IRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 235

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 236  PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----G 290

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 291  MAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 350

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 351  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 410

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 411  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 470

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +   +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 471  DPGMTLE-KAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 529

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 530  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 589

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 590  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 649

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 650  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 709

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 710  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 769

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 770  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 829

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA      F  L D C+R+D KK+N+RV+E L+ 
Sbjct: 830  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDLCARIDLKKVNKRVIEKLIL 889

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946
            AGALD  G  R  ++ S+D+  + A    +       ++F        D +    +    
Sbjct: 890  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEDVEQKYTQVPEW 949

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ + 
Sbjct: 950  PEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARV 1009

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   +
Sbjct: 1010 MTTKRGTRIGLMTLDDRSGRMEVMLY 1035


>gi|217967773|ref|YP_002353279.1| DNA polymerase III, alpha subunit [Dictyoglomus turgidum DSM 6724]
 gi|217336872|gb|ACK42665.1| DNA polymerase III, alpha subunit [Dictyoglomus turgidum DSM 6724]
          Length = 1127

 Score = 1124 bits (2908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1026 (39%), Positives = 632/1026 (61%), Gaps = 27/1026 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+GA  ++ ++D+  A   PA+AITD   ++  ++F +KA   GI+P
Sbjct: 2    SFVHLHVHTEYSLLDGACRIDELIDQAVAFNMPAVAITDHGVMYGVVDFYKKAIEKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +            K     +  ++LL    EGY+ LI+LVS  +L        
Sbjct: 62   IIGCEVYVAPASRF-----DKKQRTDLFHLILLAKDFEGYKNLIKLVSLSFLEG-FYYKP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L++  ++GL+ L+   +G I      N+ + A+  +  +  +FG+  Y+ LQ +
Sbjct: 116  RVDKDLLRQY-SKGLVALSSCLAGEIPTYILQNNIERAKNAIKEYLDIFGEDFYLELQNN 174

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ Y  + +++LA    +PLVATN+  +L +ED E HD+L+ +   + ++ KDR R 
Sbjct: 175  GMEEQEYVNNYLIRLAKEFNVPLVATNDVHYLRKEDAEIHDILLCIQTGSKLNDKDRLRF 234

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + Y K+  EM+++F D+PEA+ENT +IA RC+  + ++  ILP F   E + +    
Sbjct: 235  KTNEFYFKSPDEMINLFKDVPEAIENTFKIAERCNVEIPLNNIILPVFEVPEGETL---- 290

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++        G + R  +         Q+ ++RL +E++VI +M FSGYFLIV DF+ +A
Sbjct: 291  DSYFEKLCWEGAKKRFGENI------PQEIKERLSYEISVIKQMGFSGYFLIVQDFVNYA 344

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K   IPVGPGRGS AGS+ +Y L IT+I+P R+ L+FERFLNP+R++MPD DIDFC +RR
Sbjct: 345  KSKGIPVGPGRGSAAGSLVSYVLGITNIEPTRWGLIFERFLNPERVTMPDIDIDFCFERR 404

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI YV+NKYG E VAQIITFG++ A+A++RDVGR L +PY++VDR+ KLIP + +   
Sbjct: 405  EEVIEYVRNKYGREHVAQIITFGTMAARASVRDVGRVLDVPYNEVDRIAKLIPPNTSIE- 463

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A++     R    ++P   R++EI++++EG  RHAS HAAGIVI   PL + VP+  
Sbjct: 464  --EALSTSEELRNLVESNPQAKRIIEIAKRIEGNARHASIHAAGIVISKDPLMEYVPLQV 521

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
             +  +  VTQF M  +E+ GL+K DFLGL+TLT++  ++  + +   +++D+S I   D 
Sbjct: 522  -MNGNDVVTQFPMTNLEELGLLKMDFLGLRTLTVIYDTVKKIKENYGIEIDISNISLTDE 580

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y LL    T+G+FQLES GMR  L  ++P+  ED+IA+++LYRPGP+  +  Y  RK 
Sbjct: 581  KVYELLQKGDTIGVFQLESRGMRNLLRDIKPEKFEDLIAVLALYRPGPLGRLESYIKRKR 640

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+EK+  +HP ++P+L ET GVIIYQEQVM+IA  L+G++L +ADVLRRAMGKK  E M+
Sbjct: 641  GEEKVEYMHPALEPILSETYGVIIYQEQVMEIAHKLAGFTLGQADVLRRAMGKKKPEVME 700

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +Q+  F+ GA + GI + +AV IFE +AKFA+YGFNKSH+AAYA +S+QTA++K +YP E
Sbjct: 701  EQRGIFVKGAVERGIPEEVAVEIFEDMAKFAEYGFNKSHSAAYAFVSFQTAYLKVYYPKE 760

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            ++A+ +T   +N  K+ K+  +A++  I+I+PP +N   VDF V    I + L+AIK VG
Sbjct: 761  YMASLLTSVKNNTTKLSKYIAEAKRIGIKILPPDINESMVDFTVTPQGIRFGLSAIKNVG 820

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I+E      F S+ DF  R+ SK +N+R LESL+ +GA D FGYSR  LL ++D
Sbjct: 821  ENVAEAIVEEREKGKFKSIFDFIKRLSSKVINKRTLESLIKSGAFDSFGYSRRALLANID 880

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             I + AQ ++K       ++   E     + I        +     + E+ +LGFY S  
Sbjct: 881  KILESAQVIKKAHV-GQVSLIDLEALPQDEFIN--NMPEFSIDEILDMEKEMLGFYVSYD 937

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P +  + +  K+     ++ +    G+ + +  ++ + ++   RK  ++ + T  +   E
Sbjct: 938  PQEELRKLSEKLFDYTIDDLLEIESGSQVVVPGILKNVREVIDRKNQKMLFATLEDFTGE 997

Query: 1027 YEANFF 1032
             E   F
Sbjct: 998  AEITVF 1003


>gi|304316261|ref|YP_003851406.1| DNA polymerase III subunit alpha [Thermoanaerobacterium
            thermosaccharolyticum DSM 571]
 gi|302777763|gb|ADL68322.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
            thermosaccharolyticum DSM 571]
          Length = 1144

 Score = 1124 bits (2907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1049 (36%), Positives = 604/1049 (57%), Gaps = 45/1049 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G+  +  ++ +       +IAITD   ++ A+EF ++A + GI+PI
Sbjct: 2    FVHLHVHSEYSLLDGSCRIKELVKRAKELDMDSIAITDHGVMYGAIEFYKEAKSQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +    + ++          ++LL     GY+ L+++VS+  + D      R
Sbjct: 62   IGCEIYVAPRS---LYDKEYGIDNLNYHLILLCKNMTGYENLMKIVSKASI-DGFYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            +   +L+   +EGLI L+    G I      +  + A+   + +  +F     Y+ LQ H
Sbjct: 118  VDHEYLKN-HSEGLIALSSCLGGEIPSYLLSDDYEKAKDTAILYNSIFGKGNFYLELQYH 176

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +  S++++L+   ++P+VATN+  +L  +D+ AH+VL+ +     +   DR   
Sbjct: 177  GLSEQEKVNSELIKLSKELDIPIVATNDVHYLDRDDHMAHEVLLCIQTGKNMDDADRMSF 236

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FS   EALENT +IA  C+   + +   LP++            
Sbjct: 237  PTDEFYLKSSDEMYEMFSYCREALENTEKIAEMCNLEFEFNKTKLPKYDVPNGM----TS 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR   + G+  R A         +++  +RL++EL+VI +M +  YFLIV DFI++A
Sbjct: 293  AEYLRKLCIEGVNKRYAN-------PSKEVIERLNYELSVIEKMGYVDYFLIVWDFIKFA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            + N I  GPGRGS AGS+ AY L IT IDP++++LLFERFLNP+R+SMPD D DFC +RR
Sbjct: 346  RDNGIMTGPGRGSAAGSLVAYCLGITKIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG ++VAQIITFG++ A+AA+RDVGRAL  PY++VD + K+IP +P   +
Sbjct: 406  QEVIDYVVKKYGEDKVAQIITFGTMAARAAIRDVGRALNFPYAEVDAIAKMIPFEPGMTI 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +AI  +   +E    D  + +L+EIS+ LEGL RHASTHAAG+VI   PL + VP+ +
Sbjct: 466  D-KAIGLNPELKEKYENDEKIRQLIEISRSLEGLPRHASTHAAGVVISSEPLVKYVPLQK 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                   VTQF M  +E+ GL+K DFLGL+TLT+++ +L+ + + R + VD+  I F+D 
Sbjct: 525  --NEGSIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLNIIKETRSIDVDIDNIDFEDK 582

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            E Y L++   T G+FQLESSGM+Q +  ++P+ +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 583  EVYALISKGDTEGVFQLESSGMKQFMTELKPEKLEDIIAGISLYRPGPMDQIPRYIENKN 642

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E I   HPL+ P+L  T G ++YQEQVMQI + L+GYSL  +D++RRAM KK  + M+
Sbjct: 643  HPENIKYEHPLLKPILDVTYGCMVYQEQVMQIVRDLAGYSLGRSDLVRRAMAKKKMKVME 702

Query: 727  KQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI G                G+ +  A  +F+ +  FA+Y FNKSHAAAYAV+++
Sbjct: 703  EERKNFIYGIKDESGNYVVPGAINKGVDEATANRLFDEMIDFANYAFNKSHAAAYAVVAF 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEF+AA +   +DN +K+  + Q  ++  IQ++PP +N     F V + +
Sbjct: 763  QTAYLKRYYPVEFMAALLNSFVDNTDKVAFYVQVLKKMGIQVLPPDINESYSHFSVVNGK 822

Query: 835  IYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + LAA+K VG      I+E    +  + S+ DF  R+D  +LN++ +ESL+ AGA D 
Sbjct: 823  IRFGLAAVKNVGLNATLEIVEDRKKNGRYISIVDFFERIDDMQLNKKAVESLIKAGAFDS 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG  R QLL   ++I        +       ++F  E        +L      +  +   
Sbjct: 883  FGVYRSQLLAVYEDIMDSIHKNRERNIKGQMSLFGSEIERNEVNYSLPDIKEFSQDMILS 942

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---------VATIRGNNIRLAAMVVSK 1004
             E+  +G Y SGHPLD ++  ++++      +           +     ++ LA ++ SK
Sbjct: 943  MEKETMGLYISGHPLDEFQEDIQRVANCTTRDLKNGDDTFVKKSIFDNQDVVLAGIIESK 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + K T+  + + +V   +     +   FP
Sbjct: 1003 KIKFTKNNNMMAFVNLEDLYGTIDVIVFP 1031


>gi|302389432|ref|YP_003825253.1| DNA polymerase III catalytic subunit, DnaE type [Thermosediminibacter
            oceani DSM 16646]
 gi|302200060|gb|ADL07630.1| DNA polymerase III catalytic subunit, DnaE type [Thermosediminibacter
            oceani DSM 16646]
          Length = 1145

 Score = 1124 bits (2907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1034 (37%), Positives = 603/1034 (58%), Gaps = 29/1034 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH++YSLL+GA  ++ +  +       A+AITD   ++  ++F +   A G++P
Sbjct: 3    DFVHLHVHTNYSLLDGACEISKLAKRAKELGMNAMAITDHGVMYGIIDFYKTMKAEGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +    M ++          +VLL     GY+ L++LVS  +L        
Sbjct: 63   IIGCEVYVAKRS---MADRQPGIDDDQYHLVLLAENETGYKNLVKLVSLGFLEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L++  ++GLI L+   +G I         + A++      ++F     ++ LQ 
Sbjct: 119  RVDKEVLKK-HSQGLIALSACLAGEIPYFLENGEYEKAKEAACELNEIFGKGNFFLELQD 177

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ R  + + +L+    +PLVATN+  ++ + D   HD ++ +     V  +DR +
Sbjct: 178  HGIPEQKRVNANLCRLSKETGIPLVATNDVHYILKSDEPVHDAMLCIQTGKTVKDEDRLK 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              + + YLK++ EM  +FS +PEALENTV IA+RC+  L      LP F   +       
Sbjct: 238  FNSAELYLKSQEEMWRLFSHIPEALENTVMIAQRCNVELDFGRIHLPHFEVPQGF----T 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +++ L      GL  R        G    + + RLD+EL+VI RM +S YFLIV DF+ +
Sbjct: 294  QDSYLEKLCYEGLVERY-------GRITPEIKARLDYELDVIKRMGYSSYFLIVWDFVNF 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+KN I VGPGRGS AGS+ AY L IT++DPLR++LLFERFLNP+R++MPD D+DFC +R
Sbjct: 347  ARKNGIMVGPGRGSAAGSLVAYCLHITNVDPLRYNLLFERFLNPERVTMPDIDVDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RVAQI TFG++ A+AA+RDVGR L  PY +VD + K++P +P   
Sbjct: 407  RQEVIDYVVRKYGEDRVAQIGTFGTMAARAAIRDVGRVLGYPYGEVDTVAKMVPMEPGMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   ++    +  + RL++ ++ LEG  RHASTHAAG+VI   PL +LVP++
Sbjct: 467  IE-KALVLNPELKKLYDENERIKRLIDTAKGLEGFPRHASTHAAGVVISSEPLVELVPLH 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            +   S++  TQF M  +E+ GL+K DFLGL+TLT+++ +L  + Q RG+ V L  +P DD
Sbjct: 526  KVGDSNVS-TQFTMTALEELGLLKMDFLGLRTLTVIRDALGLIEQTRGISVVLDELPLDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
             + Y LL+   T G+FQLESSGMR  L  ++P+  EDIIA++ LYRPGP+ +     +  
Sbjct: 585  EKVYDLLSRGETTGVFQLESSGMRNLLRELRPERFEDIIAVIGLYRPGPLGSGAADEFIK 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             KN +  I  +HP + P+L+ET G+I+YQEQVM+IAQ L+G++L++AD+LR+AMGKK + 
Sbjct: 645  NKNNQGSIKYLHPRLKPILEETYGIILYQEQVMKIAQDLAGFTLAQADILRKAMGKKQQS 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M+ Q+  FI G  +NGI +  A NIFE ++ FA YGFNKSHAAAYA+I+YQTA++K H+
Sbjct: 705  VMEAQRAAFIRGCVENGIDEETAANIFEEISYFAGYGFNKSHAAAYAMIAYQTAYLKAHF 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+AA +T    N +K+ ++  + R   I+++PP +N     F     +I + L A+K
Sbjct: 765  PVEFMAALLTSVRHNTDKVAQYIAECRHMGIEVLPPDINESFEVFTAVSGKIRFGLTAVK 824

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG   A+ I++       F S  DFC ++D  ++N++ +ESL+ +GA D  G  R QLL
Sbjct: 825  NVGEGMAKAIIKCRDEKGRFVSFSDFCEKLDQTEINKKAVESLIKSGAFDSLGARRSQLL 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            +  +++    Q  +K +     ++F   +     +  L        +     E+ VLG Y
Sbjct: 885  KVYEDVLNRVQKKQKQQGKNQLSLFEMIRVDDVVEDELPDIPEYPENELLAMEKEVLGLY 944

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATI----RGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             SGHPL  +K +L K      ++           + + +  ++   + K T+    + ++
Sbjct: 945  LSGHPLREFKDLLEKTTTLCSKDLADEEKEFKDNSAVVVGGIISEIKLKSTKDNKLMAFI 1004

Query: 1019 TFSEPAKEYEANFF 1032
            T  +     E   F
Sbjct: 1005 TLEDLTGVMEVIAF 1018


>gi|323705009|ref|ZP_08116585.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
            xylanolyticum LX-11]
 gi|323535435|gb|EGB25210.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
            xylanolyticum LX-11]
          Length = 1144

 Score = 1123 bits (2906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1049 (37%), Positives = 605/1049 (57%), Gaps = 45/1049 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G+  +  ++ +       +IAITD   ++ A++F ++A + G++PI
Sbjct: 2    FVHLHVHSEYSLLDGSCRIKELIKRTKELGMNSIAITDHGVMYGAIDFYKEAVSYGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +    + ++          ++LL     GY+ L+++VS+  + D      R
Sbjct: 62   IGCEIYVSPRS---LYDKEYGIDNLNYHLILLCKNMTGYENLMKIVSKASI-DGFYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            I   +L+E  +EGLI L+    G I      +  + A++  + +  +F     Y+ LQ H
Sbjct: 118  IDHQYLKE-HSEGLIALSSCLGGEIPSYLISDDYEKAKETAIFYNSIFGTGNFYLELQYH 176

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                     S++++L+    +PLVATN+  +L +ED+ AH+VL+ +     +   DR   
Sbjct: 177  GLSQQEKVNSELIKLSQELNIPLVATNDVHYLKKEDHLAHEVLLCIQTGKNMDDSDRMSF 236

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FS   EALENTV+IA  C+   + +   LP+F   +      + 
Sbjct: 237  PTDQFYLKSPDEMYEMFSYCKEALENTVKIADMCNLEFEFNKTKLPKFEVPDGM----KS 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR   + GL  R             +  +RL++EL+VI +M +  YFLIV DFI++A
Sbjct: 293  DEYLRKLCIDGLYKRYPN-------PTDEVMERLNYELSVIEKMGYVDYFLIVWDFIKFA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            + N I  GPGRGS AGS+ AY L IT IDP++++LLFERFLNP+R+SMPD D DFC +RR
Sbjct: 346  RDNGIMTGPGRGSAAGSLVAYCLGITKIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RVAQIITFG++ A+AA+RDVGRAL  PY++VD + K+IP +    +
Sbjct: 406  QEVIDYVVKKYGEDRVAQIITFGTMAARAAIRDVGRALNFPYAEVDVIAKMIPFELGMTI 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +AI  +   ++    D  + RL++IS+ LEGL RHASTHAAG+VI   PL + VP+ +
Sbjct: 466  D-KAIELNPELKDKYEKDEKIRRLIDISRSLEGLPRHASTHAAGVVISSEPLVKYVPLQK 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                   VTQF M  +E+ GL+K DFLGL+TLT+++ +LD + + RG+ VD+  I F+D 
Sbjct: 525  --NEGSIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLDIVKETRGIDVDIDSIDFEDK 582

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            E Y L++   T G+FQLESSGM+Q +  ++P+ +ED+IA +SLYRPGP+D I  Y   KN
Sbjct: 583  EVYALISRGDTEGVFQLESSGMKQFMTELRPEKLEDVIAGISLYRPGPMDQIPRYIENKN 642

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E I   HPL+ P+L  T G ++YQEQVMQI + L+GYSL  +D++RRAM KK  + M+
Sbjct: 643  NPENIKYEHPLLKPILDVTYGCMVYQEQVMQIVRDLAGYSLGRSDLVRRAMAKKKMKVME 702

Query: 727  KQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI G                G+ +  A  +F+ +  FA+Y FNKSHAAAYAV+++
Sbjct: 703  EERKNFIYGIKDENGNYVVPGAVNRGVDEATANRLFDEMIDFANYAFNKSHAAAYAVVAF 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEF+AA +   +DN +K+  + Q  ++  IQI+PP +N     F V + +
Sbjct: 763  QTAYLKRYYPVEFMAALLNSFVDNTDKVAFYVQVLKKIGIQILPPDINESYSYFTVVNGK 822

Query: 835  IYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + LAA+K VG      I+E    +  + S+ DF  R+D  +LN++ +ESL+ AGA D 
Sbjct: 823  IRFGLAAVKNVGLNATLEIVEDRKKNGRYTSIIDFFERIDEMQLNKKAVESLIKAGAFDS 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG  R QLL   + I +      +       ++F  +  +     +L      +  V   
Sbjct: 883  FGVYRSQLLAVYEGIMESIHRSREKNIKGQMSLFESDSESHKIDYSLPDIKEFSKGVILS 942

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---------VATIRGNNIRLAAMVVSK 1004
             E+  +G Y SGHPLD Y+  +R++      +           +     ++ L  +V SK
Sbjct: 943  MEKETMGLYISGHPLDEYQDDIRRIANCTTRDLKNSDDSFVKKSAFDDQDVVLVGIVESK 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + K T+  + + +V  ++     E   FP
Sbjct: 1003 KIKFTKNNNMMAFVNLADLYGTIEVIVFP 1031


>gi|153952|gb|AAA27057.1| polymerase III polymerase subunit (dnaE) [Salmonella enterica subsp.
            enterica serovar Typhimurium]
          Length = 1160

 Score = 1123 bits (2906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1047 (40%), Positives = 616/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|289825701|ref|ZP_06544869.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. E98-3139]
          Length = 1063

 Score = 1123 bits (2906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1047 (40%), Positives = 616/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|260596604|ref|YP_003209175.1| DNA polymerase III subunit alpha [Cronobacter turicensis z3032]
 gi|260215781|emb|CBA28207.1| DNA polymerase III subunit alpha [Cronobacter turicensis z3032]
          Length = 1160

 Score = 1123 bits (2906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/1045 (41%), Positives = 614/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA AITD  NL   ++F   A   G++
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPAFAITDFTNLCGLVKFYGGAHGVGMK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   ++          Q          I +L +   GYQ L  L+SR Y    G   
Sbjct: 64   PIIGADFNM----------QCDLLGEDFSHITVLAANNTGYQNLTLLISRAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+G EGLI+L+GG  G + +     ++ +AE+ L  +++ F DR Y+ L R
Sbjct: 114  PWIDQQWLAELG-EGLILLSGGRQGDVGKCLLRGNNVMAEQALAFYQEHFPDRYYLELVR 172

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D  R     V LA    +P+VATN+  F+   D++AH++ +A+     +    RP 
Sbjct: 173  TGRPDEERYLHAAVALAEEKGVPVVATNDVRFIEPGDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL+   EM  +FSDLPEALEN+VEIARRC+  +++    LP+F   +       
Sbjct: 233  HYSPQQYLRTEEEMCELFSDLPEALENSVEIARRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +      Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVMKSKEGLEERLEFLFPDPEERVQKRPPYDERLEIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + + +E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAFEAEPQLQEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +LD +  R        +D+
Sbjct: 527  PLYCDEMGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALDMINARRAKQGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSIFEDGAKNNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA   D  F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F    +     + +         
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A ++++ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTERGKVTTAAGLIIAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|197119463|ref|YP_002139890.1| DNA polymerase III subunit alpha [Geobacter bemidjiensis Bem]
 gi|197088823|gb|ACH40094.1| DNA polymerase III, alpha subunit [Geobacter bemidjiensis Bem]
          Length = 1156

 Score = 1123 bits (2905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1037 (39%), Positives = 619/1037 (59%), Gaps = 18/1037 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S +FVHL +HS YSLL+GA+ + ++L K+     PA+A+TD  N+F  LEF  K    G+
Sbjct: 3    STNFVHLHLHSQYSLLDGAIRIGDLLKKVKECHMPAVAMTDHGNMFGTLEFYLKCKDKGV 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+G ++ I  QD             +   ++LL     G++ L  LVS  Y  +   +
Sbjct: 63   KPILGSEVYIAPQDRFLKQAPSSPGQASSYHLILLCENMTGFKNLSYLVSAGY-KEGFYR 121

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              RI    L +   EGLI+L+    G +      N    A      + + F    Y+ LQ
Sbjct: 122  RPRIDKELLLK-HKEGLIVLSACLQGEVAYLAGRNKMDEARAAASWYAENFPGSYYIELQ 180

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             ++  ++     +++++A   +LPLVATN+  +L+ ED  AH++L+ +     +S     
Sbjct: 181  ENKLPEQDIANRRLMEIAREMDLPLVATNDCHYLNREDARAHEILLCIQTGKTMSDPTHM 240

Query: 247  RVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + D +  K   EM   F   PEA+ENTV+IA RC+          P +   E + +  
Sbjct: 241  AFSVDEFYVKTPQEMAQAFHYAPEAIENTVKIAERCNLEFDFKTYYFPAYEAPEGETL-- 298

Query: 306  EEENELRNKAVAGLEVRLAQGAIAK---GYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + +L  +A  GL  RL +  I         Q Y  RL  EL+ I +M F GYFLIVAD
Sbjct: 299  --DQQLEREATVGLVERLKKIRIKYNLTEEQEQAYHARLRIELDCIKQMGFPGYFLIVAD 356

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK + IPVGPGRGS AGS+ A+ + ITDIDP+ ++LLFERFLNP+R+SMPD D+DF
Sbjct: 357  FINWAKDHGIPVGPGRGSAAGSLVAFCIRITDIDPMPYNLLFERFLNPERISMPDIDVDF 416

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVI+Y+  KYG E+V QIITFG++ A+  +RDVGRAL + + +VDR+ KL+P  
Sbjct: 417  CQDRREEVIQYMVEKYGREKVCQIITFGTMAARGVIRDVGRALDLTFGEVDRIAKLVPEV 476

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+  + + +E   ADP V  ++ ++ +LEGL RHASTHAAG+V+  R + + 
Sbjct: 477  LGITLD-KALEQEPKLKELMAADPKVKEVMTVALRLEGLARHASTHAAGLVVAPRQMEEF 535

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
             P+Y+D ++    TQ++MK++EK GL+KFDFLGLK LT++  +   +   +    D++L+
Sbjct: 536  CPVYKDQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIDNACKHIRNGKDPNFDITLL 595

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
              DD E+Y LL    T G+FQLESSGM++ L  ++P C EDIIA+ +LYRPGP+ + +V 
Sbjct: 596  RDDDEESYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLGSGMVD 655

Query: 661  -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RK+G+++ V   P ++P+LK+T GVI+YQEQVMQI++ L+GYSL  AD+LRRAMGK
Sbjct: 656  DFIERKHGRKQTVYDLPQLEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGADLLRRAMGK 715

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  E+M K++++F+ G+ K G+       IF+L+AKFA+YGFNKSH+AAYA+++YQTA++
Sbjct: 716  KDAEQMAKERDKFLEGSEKLGLDGKKCAAIFDLMAKFAEYGFNKSHSAAYALVAYQTAFL 775

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYPVEF+AA +T +M N +K+ K   D R+  I+++PP +N     F+V D  + + L
Sbjct: 776  KAHYPVEFMAALLTEDMGNTDKVIKSIGDCREMGIEVLPPDINESDRSFRVLDKAMRFGL 835

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             A+K VG      I+EA  D+PF  L DFC RVD +++N+RV+E+L+  GA DC G  R 
Sbjct: 836  GAVKNVGEGAIEAIIEARGDEPFKDLFDFCERVDLRRVNKRVIEALIKCGAFDCTGAKRS 895

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFENEQ 956
            QL+  L++     Q V++ R +   ++F   +   G       L +    +   R   E+
Sbjct: 896  QLMAGLEDAASAGQRVQQERESAQASLFGAAEIVRGANGGGNRLPEIPEWDEKYRLGCEK 955

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              +GF+ +GHPLD Y   +R+         +     + +R+  +  S ++  T+KG R+ 
Sbjct: 956  EAIGFFITGHPLDRYVADMRRFSSVDCSTILDAKEKSEVRICGVPASVKELITKKGDRMA 1015

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++   +     E   FP
Sbjct: 1016 FLALEDLVGSVEVVVFP 1032


>gi|229528752|ref|ZP_04418142.1| DNA polymerase III alpha subunit [Vibrio cholerae 12129(1)]
 gi|229332526|gb|EEN98012.1| DNA polymerase III alpha subunit [Vibrio cholerae 12129(1)]
          Length = 1159

 Score = 1123 bits (2905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1046 (40%), Positives = 615/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G
Sbjct: 2    SDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +
Sbjct: 62   VKPIIGA----------DFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L
Sbjct: 112  HQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 171  IRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 231  PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  MAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +   +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNIGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ S+D+  + A    +       ++F          +    +    
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ + 
Sbjct: 945  PEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   +
Sbjct: 1005 MTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|16763621|ref|NP_459236.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. LT2]
 gi|167990118|ref|ZP_02571218.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|20141337|sp|P14567|DPO3A_SALTY RecName: Full=DNA polymerase III subunit alpha
 gi|16418736|gb|AAL19195.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Typhimurium str. LT2]
 gi|205331368|gb|EDZ18132.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261245463|emb|CBG23253.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Typhimurium str. D23580]
 gi|267991922|gb|ACY86807.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. 14028S]
 gi|312911201|dbj|BAJ35175.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. T000240]
          Length = 1160

 Score = 1123 bits (2905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1047 (40%), Positives = 616/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|301156858|emb|CBW16334.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Typhimurium str. SL1344]
 gi|323128551|gb|ADX15981.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. 4/74]
          Length = 1160

 Score = 1123 bits (2905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1047 (40%), Positives = 616/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|194445238|ref|YP_002039471.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. SL254]
 gi|194403901|gb|ACF64123.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Newport str. SL254]
          Length = 1160

 Score = 1123 bits (2905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1047 (40%), Positives = 616/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|200387887|ref|ZP_03214499.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Virchow str. SL491]
 gi|199604985|gb|EDZ03530.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Virchow str. SL491]
          Length = 1160

 Score = 1123 bits (2904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1047 (40%), Positives = 616/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|167553355|ref|ZP_02347104.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Saintpaul str. SARA29]
 gi|198243100|ref|YP_002214192.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Dublin str. CT_02021853]
 gi|197937616|gb|ACH74949.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Dublin str. CT_02021853]
 gi|205322170|gb|EDZ10009.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Saintpaul str. SARA29]
          Length = 1160

 Score = 1123 bits (2904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1047 (40%), Positives = 616/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|271499510|ref|YP_003332535.1| DNA polymerase III subunit alpha [Dickeya dadantii Ech586]
 gi|270343065|gb|ACZ75830.1| DNA polymerase III, alpha subunit [Dickeya dadantii Ech586]
          Length = 1160

 Score = 1123 bits (2904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1045 (40%), Positives = 617/1045 (59%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F   A +AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+SR Y    G   
Sbjct: 64   PIIGADFYL----------QSEELGDELAHLTVLAMNNEGYQNLTLLISRAYQRGYGADG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E    G+++L+GG  G I +     +  + E+ +  +++ F  R Y+ L R
Sbjct: 114  PTIDREWLVE-HQAGILLLSGGRHGDIGKFLLRGNQVLVEQSVAFYQQHFPQRFYLELTR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        ++LA  H LP+VATN+  F+S++D+EAH++ +A+     +    RP 
Sbjct: 173  TGRPDEESYLHAAIKLATAHGLPVVATNDVCFISQDDFEAHEIRVAIHDGFTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEDEMCELFADIPEALINTVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L   A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVMCAKKGLEERLAFLFPDEEVRAQRRPEYDERLDIELGVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDLVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K      D+
Sbjct: 527  PLYCDQEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARREKQGLEPVDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDIQWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA K G+   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFKEGAEKMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +KI     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I++A  +   F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIDARNNGGYFRDLFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F     T    + +         
Sbjct: 887  AFDRLGPHRAALMNSLADAMKSADQHAKAEAIGQADMFGVLAETPEQVEQSYSTVPPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG       +V++ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLVLAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGVCTLDDRSGRLEVMLF 1031


>gi|297569370|ref|YP_003690714.1| DNA polymerase III, alpha subunit [Desulfurivibrio alkaliphilus AHT2]
 gi|296925285|gb|ADH86095.1| DNA polymerase III, alpha subunit [Desulfurivibrio alkaliphilus AHT2]
          Length = 1192

 Score = 1123 bits (2904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1037 (41%), Positives = 623/1037 (60%), Gaps = 23/1037 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YS+L+GA+ L+ +L +       A+AITD   +F ALEF  KA  AGI+P
Sbjct: 14   GFVHLHVHTQYSMLDGAIRLDRLLAQCKEYGMEAVAITDHGAMFGALEFYVKAKKAGIKP 73

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  +   D        K+       +VLL    EGYQ L++L S            
Sbjct: 74   IIGCEFYVAPADR--RDKSAKSAGAAAHHLVLLAMNNEGYQNLMKLASCAQFEG-FHYKP 130

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L     +GLI LT    G +           A+      +KLF DRLY+ LQ +
Sbjct: 131  RIDYELLSR-HNQGLIALTACLHGQLPMLLTRGDYDGAKAAAGKLQKLFPDRLYLELQEN 189

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +  ++      + +LA   +LPLVATN+  +L+ E+ +AH+VL+ +     ++ + R R 
Sbjct: 190  KIAEQQTVNDGLKKLAAELKLPLVATNDCHYLNREEAQAHEVLLCIQTGKTMADQGRFRF 249

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            + D  + K+ +EM   FS  PEA+  TV++A RC+  L + +   P F   E + +    
Sbjct: 250  STDELFFKSPAEMKKSFSHCPEAIAETVKVAARCNVELDLSSHHFPHFPIPEGETL---- 305

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFI 364
            E+     A  GLE R  +         +   +YR RL+ E++VI +M F GYFLIVADFI
Sbjct: 306  ESVFSKDAREGLEKRFTEIRRLTELTPEQEEEYRARLEHEIDVIIKMGFPGYFLIVADFI 365

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAK + IPVGPGRGSGAGS+ A+A+ ITDIDP+ + L+FERFLN +R SMPDFD+DFCQ
Sbjct: 366  NWAKDHEIPVGPGRGSGAGSLVAWAMRITDIDPMPYGLIFERFLNIERKSMPDFDVDFCQ 425

Query: 425  DRRDEVIRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            +RR EVI YVQ KYG  E VAQI+T+GS++A+A +RDVGRAL MPY +VDR+ KLIP + 
Sbjct: 426  ERRGEVIEYVQQKYGGAEHVAQIVTYGSMKARAVVRDVGRALGMPYGEVDRIAKLIPEEL 485

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +AI  + R  +    +P V  LL  ++ LEGL RH STHAAG+VI  +P+ + +
Sbjct: 486  GITLD-KAIDKEPRLGDLMKREPPVAELLNAARVLEGLQRHTSTHAAGVVISPKPMVEYL 544

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602
            P+ +  + ++ +TQ++MK  E  GLIKFDFLGLKTLT++ ++   +    G ++D+  I 
Sbjct: 545  PLCKGPKGEV-LTQYDMKHTEMTGLIKFDFLGLKTLTVIDRACKLIKGDLGREIDIGAIA 603

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD +TY LL     LG+FQLESSGMR  L  M+P+   D+IALV+LYRPGP+++ +V  
Sbjct: 604  TDDPKTYDLLCKGDALGVFQLESSGMRSLLMKMKPEQFSDLIALVALYRPGPLESGMVDD 663

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + N K+G+       P ++P+L+ET GVI+YQEQVM+IA +L+GYSL +AD LRRAMGKK
Sbjct: 664  FVNTKHGRMVAKYPLPQLEPILQETYGVIVYQEQVMKIANVLAGYSLGDADNLRRAMGKK 723

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I   MD +K++F++G +KN I    A  IF+L+AKFA YGFNKSH+AAYA+++YQTAW+K
Sbjct: 724  IAAVMDAEKDKFMAGCAKNNIDPKKAEYIFDLMAKFAGYGFNKSHSAAYALVAYQTAWLK 783

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYP +F+AA ++ +M N +K+ ++  + ++  I+++PP +N    DF V D+RI + LA
Sbjct: 784  AHYPAQFMAALLSCDMGNTDKVVRYINECKEHEIEVLPPDINESFRDFTVIDDRIRFGLA 843

Query: 841  AIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            A+K VG      I+E   AD P+ SL DFC RVD +K+NRRV+ESL+ AGA D  G  R 
Sbjct: 844  AVKNVGGAALESIIEIREADGPYKSLVDFCQRVDGRKVNRRVIESLIRAGAFDSLGAKRS 903

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQ 956
            QL   LD     AQ  ++++ +   ++FA      ++   +I L +        +   E+
Sbjct: 904  QLEAILDRALDQAQAAQRDKLSGQISLFAAMPTDQAERATEIELPEMPEWEEKQKLLFEK 963

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              +GFY +GHPLD ++  L  +                 R+  ++   +  +++KG  + 
Sbjct: 964  ETVGFYLTGHPLDKHRRELAALTDTDLHGLAEWPDNQPARIGGLIRQFKNHRSKKGDAMA 1023

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +VT  +     E   FP
Sbjct: 1024 FVTLEDTVDSVEVVVFP 1040


>gi|213865541|ref|ZP_03387660.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. M223]
          Length = 1093

 Score = 1122 bits (2903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1047 (40%), Positives = 616/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|16759221|ref|NP_454838.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. CT18]
 gi|29140771|ref|NP_804113.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. Ty2]
 gi|213163684|ref|ZP_03349394.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. E00-7866]
 gi|213425957|ref|ZP_03358707.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. E02-1180]
 gi|213648459|ref|ZP_03378512.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. J185]
 gi|25288562|pir||AI0530 DNA polymerase III, alpha chain [imported] - Salmonella enterica
            subsp. enterica serovar Typhi (strain CT18)
 gi|16501512|emb|CAD08689.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Typhi]
 gi|29136395|gb|AAO67962.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Typhi str. Ty2]
          Length = 1160

 Score = 1122 bits (2903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1047 (40%), Positives = 616/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|197265397|ref|ZP_03165471.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Saintpaul str. SARA23]
 gi|197243652|gb|EDY26272.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Saintpaul str. SARA23]
          Length = 1160

 Score = 1122 bits (2902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1047 (40%), Positives = 616/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATNN  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNNVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|49474348|ref|YP_032390.1| DNA polymerase III subunit alpha [Bartonella quintana str. Toulouse]
 gi|49239852|emb|CAF26246.1| DNA polymerase III alpha subunit [Bartonella quintana str. Toulouse]
          Length = 1162

 Score = 1122 bits (2902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 584/1033 (56%), Positives = 746/1033 (72%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
               P F+HL+VHS+YSLLEGAL +  I+    +D  PA+AITDTNNLF ALEFSQ   + 
Sbjct: 13   NSPPRFIHLRVHSAYSLLEGALKIPQIIQHAISDAMPAVAITDTNNLFGALEFSQHCFSH 72

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFP-TVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            GIQPIIGCQL ID  D        K   P    SIVLL ++  GY  L+ LVSR YL   
Sbjct: 73   GIQPIIGCQLTIDFGDGNDNPRFVKWRHPFDFCSIVLLAASKIGYAHLVRLVSRAYLDKC 132

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL    +EG+I LTGG  GPI+     +    A +RL+  KK+F DRLYV
Sbjct: 133  DTDPPHIKADWLLSQ-SEGIIALTGGRGGPINFCLAEDKKARAVERLIYLKKVFNDRLYV 191

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQRH  +DR  E+ +++LAY H +PLVATN + FL+ + YEAHD LMAVA   +VS  D
Sbjct: 192  ELQRHGSFDRKVETALIELAYAHGIPLVATNEAFFLNRKGYEAHDALMAVAEGQIVSNPD 251

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R RVTPDHYLK + EMV++FSDLPEALEN+VEIA RC     +  PILPRFIE+  D   
Sbjct: 252  RKRVTPDHYLKPQDEMVALFSDLPEALENSVEIALRCHTATPIRKPILPRFIEQSVDSNF 311

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +EE++EL N+A  GL+ RL    +A+GY   DY++RLD+E++VI RM+FSGYFLIV+D
Sbjct: 312  TLEEEDSELLNQAKDGLKRRLETIGLAEGYTIADYQKRLDYEISVITRMQFSGYFLIVSD 371

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 372  FIKWAKVHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRISMPDFDIDF 431

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ+RR+EVI YVQ +YG ++VAQIITFG LQA+A LRDVGR L++PY QVD L KL+P  
Sbjct: 432  CQERREEVIHYVQKRYGRDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVPAA 491

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P + V L  AI D+ +F E +  DP++ R L+I+ +LEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 492  PGNQVELADAIKDEPKFEEEKKKDPAIGRTLDIALQLEGLYRHASTHAAGIVIGDRPLSE 551

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVP+YRD RS++PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++G+K+DLS I
Sbjct: 552  LVPLYRDPRSNMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARKGIKIDLSHI 611

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P +D  TY ++    T+G+FQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++NI +Y
Sbjct: 612  PLNDEATYAMMARGETVGVFQVESSGMRKALIGMRPDRIEDIIALVALYRPGPMENIPIY 671

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RK+G+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKKI
Sbjct: 672  NARKHGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKI 731

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             EEM KQ+ RF++GA   G+ K  A  IF+LLAKFADYGFNKSHAAAYA+ISYQTA+MK 
Sbjct: 732  HEEMQKQRTRFVNGAVAGGVDKEQANIIFDLLAKFADYGFNKSHAAAYAIISYQTAYMKA 791

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            H+ VEFLAASM+ +M N EK+  F ++A +  I+++ P V T    F+VG N IYYSLAA
Sbjct: 792  HHSVEFLAASMSYDMTNTEKLNDFRREALRLGIEVIAPCVQTSHRLFEVGKNCIYYSLAA 851

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI+    +K F  L+DFC R+D + +N+R +ESLV AGA DCF  +R  L
Sbjct: 852  IKGVGEAVVDHIVACRGNKVFKDLKDFCERIDPRIVNKRAMESLVCAGAFDCFNIAREVL 911

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L SL  +   A  +  N  +   ++F    G     I L + S  + + +   E +V+GF
Sbjct: 912  LASLGTLHARALRIFDNNFSGQVDMFGIAGGLKEPLI-LSQASPWSPAEKLYREFQVIGF 970

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            YFS HPLD Y+ IL K  I+ +      ++G     RLA  VV+KQ +KT+ G ++G + 
Sbjct: 971  YFSAHPLDEYQAILAKKRIQTWVNFANAVKGGATVARLAGTVVAKQVRKTKSGKKMGIIH 1030

Query: 1020 FSEPAKEYEANFF 1032
            FS+ + +YE   F
Sbjct: 1031 FSDTSGQYETILF 1043


>gi|62178801|ref|YP_215218.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Choleraesuis str. SC-B67]
 gi|62126434|gb|AAX64137.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Choleraesuis str. SC-B67]
 gi|322713255|gb|EFZ04826.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Choleraesuis str. A50]
          Length = 1160

 Score = 1122 bits (2902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1047 (40%), Positives = 616/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|168823099|ref|ZP_02835099.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Weltevreden str. HI_N05-537]
 gi|205340602|gb|EDZ27366.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Weltevreden str. HI_N05-537]
 gi|320084485|emb|CBY94278.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica
            serovar Weltevreden str. 2007-60-3289-1]
          Length = 1160

 Score = 1122 bits (2902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1047 (40%), Positives = 616/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+++GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|297617868|ref|YP_003703027.1| DNA polymerase III subunit alpha [Syntrophothermus lipocalidus DSM
            12680]
 gi|297145705|gb|ADI02462.1| DNA polymerase III, alpha subunit [Syntrophothermus lipocalidus DSM
            12680]
          Length = 1131

 Score = 1122 bits (2902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1031 (39%), Positives = 620/1031 (60%), Gaps = 25/1031 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  HS YSLL+GA+ +++++ +      PA+AITD   L+  ++F ++A  AGI+P
Sbjct: 3    GFVHLHTHSEYSLLDGAVRVSSLVKRAKELGMPALAITDHGVLYGVIDFYKQARKAGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +     T +       +  + LL    +GY+ L+++VS+ +L        
Sbjct: 63   IIGCEVYVAPRHRFDRTPK---VDDALYHLTLLCENQDGYRNLVQMVSKAFLEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L E    GLI L+G  +G +       + + A      F+++F  +  ++ +Q 
Sbjct: 119  RVDKELL-EQHGRGLIALSGCIAGEVPELLLAGNYEEARAVAGYFREVFGENNFFLEVQD 177

Query: 189  HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++   ++ +  L+   ++PLVATN+  +L+ +D   HDVL+ +    V++ + R R
Sbjct: 178  HGLSEQRVVNEAMCHLSRELDVPLVATNDVHYLNRDDAFIHDVLLCIQTGKVLTDESRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               P+ Y K+  EM S+F+ +PEA+ NTV IA RCS      +  LP F   E       
Sbjct: 238  FPCPEFYFKSGEEMSSLFAHIPEAVTNTVTIAERCSVDFGFDSFCLPEFPLPEG----AT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+ L + A   L  R A       +       RL  EL+VI RM F+GYFLIV D + W
Sbjct: 294  AESYLEDLAWKKLRERFA-------HPGTKVIDRLRLELDVINRMGFAGYFLIVQDLVHW 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   I VGPGRGS AGS+ +Y L ITDI+PL + LLFERFLNP+R++MPD DIDFC ++
Sbjct: 347  AKNRGIRVGPGRGSAAGSLVSYVLGITDINPLEYGLLFERFLNPERITMPDIDIDFCFEK 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD+VI YV  KYG +RVAQIITFG++ A+AA+RDVGR L+ PYS+VDR+ K++P +    
Sbjct: 407  RDQVINYVIEKYGSDRVAQIITFGTMAARAAIRDVGRVLEYPYSEVDRIAKMVPAELGIS 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+       EA   D  V RL++ ++ LEG  RHAS HAAG+VIG   LS+++P+ 
Sbjct: 467  LD-RALEVSGDLAEAYKNDFRVRRLVDTARALEGFPRHASVHAAGVVIGRESLSRVLPLQ 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            R       VTQF  + +E+ GL+K D LGL+TLT++ + LD + + RG ++D+  I  DD
Sbjct: 526  RTA-DGHVVTQFTKETVEEIGLLKMDILGLRTLTVIDRCLDIIRKTRGYEIDIDHISLDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
             +TY LL+   T+G+FQLES G+R+ L+ ++P   ED+IA+++LYRPGP+ + +V  + N
Sbjct: 585  PDTYRLLSEGDTVGVFQLESEGLRRLLQEVRPSSFEDLIAIIALYRPGPLGSGMVEDFVN 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G++ I  +HP ++P+L+ET GVI+YQEQVM+IA  L+ +S+ EADVLRRAMGKK  +
Sbjct: 645  RKHGRQPIEYLHPKLEPILRETYGVILYQEQVMRIASELADFSMGEADVLRRAMGKKKPD 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            E+  Q+ +F+ GA +NGI +  A ++FEL+  FA YGFNKSH+AAYA++SYQTA++K HY
Sbjct: 705  ELAAQRNKFVEGAYRNGIDRETASSLFELMEHFAGYGFNKSHSAAYALVSYQTAYLKAHY 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVE++ A +T  +DN +++  + ++ R+  + I+PP +N    +F V   RI + L AIK
Sbjct: 765  PVEYMCAFLTSVIDNQDRVVYYLKECRRMGMDILPPDINESFENFTVAGGRIRFGLGAIK 824

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
             VG    R I+EA  +  F SL +FC RVD ++LN+RV+E+L+ AGA D  G  R + L 
Sbjct: 825  NVGINAVRSIIEARKEGRFSSLLEFCLRVDLRQLNKRVMENLILAGAFDSLGLKRKEALS 884

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVRFENEQRVLGFY 962
             LD     A  V     +   ++F  +      +  + +     +   + + E+ VLGFY
Sbjct: 885  LLDECLALAVEVRAAMDSAQPSLFVDDAAATVVQDPVPRSKGEFSVQEKLKKEKEVLGFY 944

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             S +PL+ Y+ ++  +      E      G  +R+ A V + ++ +++KG     +   +
Sbjct: 945  VSQNPLEEYREVIPYLMSHEISELSKLDEGQVVRIVATVTAMKRSRSKKGEPWARLVLED 1004

Query: 1023 PAKEYEANFFP 1033
               + EA  FP
Sbjct: 1005 FTGKVEAVVFP 1015


>gi|168230540|ref|ZP_02655598.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CDC 191]
 gi|194468770|ref|ZP_03074754.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CVM29188]
 gi|194455134|gb|EDX43973.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CVM29188]
 gi|205335161|gb|EDZ21925.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CDC 191]
          Length = 1160

 Score = 1122 bits (2902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1047 (40%), Positives = 615/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+++GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL    K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGAALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|168244999|ref|ZP_02669931.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Heidelberg str. SL486]
 gi|194449006|ref|YP_002044221.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. SL476]
 gi|194407310|gb|ACF67529.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Heidelberg str. SL476]
 gi|205336213|gb|EDZ22977.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Heidelberg str. SL486]
          Length = 1160

 Score = 1122 bits (2902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1047 (40%), Positives = 616/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+++GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|56412504|ref|YP_149579.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Paratyphi A str. ATCC 9150]
 gi|197361439|ref|YP_002141075.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Paratyphi A str. AKU_12601]
 gi|56126761|gb|AAV76267.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Paratyphi A str. ATCC 9150]
 gi|197092915|emb|CAR58344.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Paratyphi A str. AKU_12601]
          Length = 1160

 Score = 1122 bits (2902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1047 (40%), Positives = 616/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  +GLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KDGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I++A      F  L D C+R D+K+LNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKRLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|261211363|ref|ZP_05925651.1| DNA polymerase III alpha subunit [Vibrio sp. RC341]
 gi|260839318|gb|EEX65944.1| DNA polymerase III alpha subunit [Vibrio sp. RC341]
          Length = 1159

 Score = 1121 bits (2901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1046 (40%), Positives = 616/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL+VHS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G
Sbjct: 2    SDPKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG    +          Q +     +  + LL     GY+ L  L+S+ YL    +
Sbjct: 62   IKPIIGADFML----------QSEEFGDELTKLTLLAKNNIGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  +WL +   EGLI+L+GG SG + RA    + Q  EK L  ++  F D  Y+ L
Sbjct: 112  HQPVLDKAWLID-HAEGLIVLSGGKSGEVGRALLKGNQQQVEKCLEFYQTHFADHFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        + +A  +ELP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 171  IRTGRADEESYLHFALDVAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL+  +EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSPKQYLRTEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  MAIEDFLVMKSREGLEDRLEFLFPDPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +   +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA   D  F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ S+D+  + A    +       ++F          +    +    
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ + 
Sbjct: 945  PEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   +
Sbjct: 1005 MTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|254225765|ref|ZP_04919370.1| DNA polymerase III, alpha subunit [Vibrio cholerae V51]
 gi|125621671|gb|EAZ50000.1| DNA polymerase III, alpha subunit [Vibrio cholerae V51]
          Length = 1164

 Score = 1121 bits (2901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1046 (40%), Positives = 613/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G
Sbjct: 7    SDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG 66

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +
Sbjct: 67   VKPIIGA----------DFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQ 116

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL E   EGLI+L+GG  G + RA    + Q  E+ +  ++  F D  Y+ L
Sbjct: 117  HQPVIDKAWLVE-HAEGLIVLSGGKRGEVGRALLKGNQQQVERCIEFYQTHFADHFYLEL 175

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 176  IRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 235

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 236  PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----G 290

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 291  MAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQIELDVINQMGFPGYFLIVM 350

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 351  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 410

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 411  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 470

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +   +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 471  DPGMTLE-KAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 529

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 530  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 589

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 590  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 649

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 650  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 709

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 710  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 769

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 770  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 829

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 830  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 889

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ S+D+  + A    +       ++F          +    +    
Sbjct: 890  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEW 949

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                R E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ + 
Sbjct: 950  PEKARLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARV 1009

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   +
Sbjct: 1010 MTTKRGTRIGLMTLDDRSGRMEVMLY 1035


>gi|238911297|ref|ZP_04655134.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Tennessee str. CDC07-0191]
          Length = 1160

 Score = 1121 bits (2901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1047 (40%), Positives = 616/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+++GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEALENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|197251652|ref|YP_002145236.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Agona str. SL483]
 gi|197215355|gb|ACH52752.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Agona str. SL483]
          Length = 1160

 Score = 1121 bits (2900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1047 (40%), Positives = 616/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F +R ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPERYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|168264639|ref|ZP_02686612.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Hadar str. RI_05P066]
 gi|168464204|ref|ZP_02698107.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Newport str. SL317]
 gi|205351568|ref|YP_002225369.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Gallinarum str. 287/91]
 gi|195632694|gb|EDX51148.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Newport str. SL317]
 gi|205271349|emb|CAR36142.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Gallinarum str. 287/91]
 gi|205346919|gb|EDZ33550.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Hadar str. RI_05P066]
 gi|326626595|gb|EGE32938.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Gallinarum str. 9]
          Length = 1160

 Score = 1121 bits (2900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1047 (40%), Positives = 616/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+++GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|323497991|ref|ZP_08103000.1| DNA polymerase III subunit alpha [Vibrio sinaloensis DSM 21326]
 gi|323317036|gb|EGA70038.1| DNA polymerase III subunit alpha [Vibrio sinaloensis DSM 21326]
          Length = 1159

 Score = 1121 bits (2899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1046 (40%), Positives = 612/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL++HS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A   G
Sbjct: 2    SDPKFVHLRIHSDFSMVDGLSKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGCG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG    +          Q       +  + +L +   GY+ L  L+S+ YL    +
Sbjct: 62   IKPIIGADFAM----------QSVEFGDELTKLTVLAADNVGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG SG I +A    + +VA +    ++  F DR Y+ L
Sbjct: 112  HQPVIDKEWLTELA-EGLIILSGGKSGEIGKALLKGNQKVAHECAEFYQTHFPDRFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        ++ +   ELP+VATN+ + L +  ++AH++ +A+     +    R
Sbjct: 171  TRTGRADEESYLHFALEFSEQVELPVVATNDVVILDDSTFDAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL++  EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSPQQYLRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             EE   L  K+  GLE RL         +     +Y  RL  EL VI  M F GYFLIV 
Sbjct: 286  MEETEFLVKKSEEGLEERLEFLFPDPEVRAQRRPEYDDRLKIELEVINNMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +    E   AD  V  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFKAEPALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD---- 597
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  +      
Sbjct: 525  FAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLAREGKDPV 584

Query: 598  -LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  AIESIPLDDQASFSLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E +        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAVSYPDEQWQHDSLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRATFEEGAVANGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECLRMKLKVLPPDINSGLYRFN 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V ++    Y + AIKGVG      I+EA   D  F  L DFC+R+D KK+N+RV+E L++
Sbjct: 825  VNEDGEIVYGIGAIKGVGEGPIDAILEARNKDGHFKDLFDFCARIDLKKVNKRVIEKLIY 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ SL++  K A    +       ++F    +     +    K    
Sbjct: 885  AGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQSDLFGVLTEAPEEVEHKYTKVPPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ + 
Sbjct: 945  PEKVWLEGERTTLGLYLTGHPINAYLKELGKYTSCRLKDATPTRRDQSVTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|207855749|ref|YP_002242400.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. P125109]
 gi|206707552|emb|CAR31826.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Enteritidis str. P125109]
          Length = 1160

 Score = 1121 bits (2899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1047 (40%), Positives = 616/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +FSD+PE+LENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPESLENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|168235011|ref|ZP_02660069.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Schwarzengrund str. SL480]
 gi|194737870|ref|YP_002113254.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Schwarzengrund str. CVM19633]
 gi|194713372|gb|ACF92593.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Schwarzengrund str. CVM19633]
 gi|197291671|gb|EDY31021.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Schwarzengrund str. SL480]
 gi|322616055|gb|EFY12972.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 315996572]
 gi|322620838|gb|EFY17698.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 495297-1]
 gi|322623811|gb|EFY20648.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 495297-3]
 gi|322627259|gb|EFY24050.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 495297-4]
 gi|322630566|gb|EFY27330.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 515920-1]
 gi|322638216|gb|EFY34917.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 515920-2]
 gi|322640701|gb|EFY37352.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 531954]
 gi|322645515|gb|EFY42042.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. NC_MB110209-0054]
 gi|322657142|gb|EFY53425.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. CASC_09SCPH15965]
 gi|322657512|gb|EFY53784.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 19N]
 gi|322663832|gb|EFY60032.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 81038-01]
 gi|322666665|gb|EFY62843.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MD_MDA09249507]
 gi|322672177|gb|EFY68289.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 414877]
 gi|322676512|gb|EFY72583.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 366867]
 gi|322679396|gb|EFY75441.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 413180]
 gi|322686277|gb|EFY82261.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 446600]
 gi|323193457|gb|EFZ78665.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 609458-1]
 gi|323197521|gb|EFZ82656.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 556150-1]
 gi|323201210|gb|EFZ86279.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 609460]
 gi|323209605|gb|EFZ94538.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 507440-20]
 gi|323212143|gb|EFZ96967.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 556152]
 gi|323216448|gb|EGA01174.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB101509-0077]
 gi|323223362|gb|EGA07697.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB102109-0047]
 gi|323225923|gb|EGA10143.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB110209-0055]
 gi|323228536|gb|EGA12665.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB111609-0052]
 gi|323236851|gb|EGA20927.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 2009083312]
 gi|323239649|gb|EGA23696.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 2009085258]
 gi|323242304|gb|EGA26333.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 315731156]
 gi|323249966|gb|EGA33862.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2009159199]
 gi|323252396|gb|EGA36247.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008282]
 gi|323255679|gb|EGA39432.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008283]
 gi|323262884|gb|EGA46434.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008284]
 gi|323265370|gb|EGA48866.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008285]
 gi|323271843|gb|EGA55261.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008287]
          Length = 1160

 Score = 1120 bits (2898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1047 (40%), Positives = 616/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEALENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSIDEMCELFADIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|204926920|ref|ZP_03218122.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Javiana str. GA_MM04042433]
 gi|204323585|gb|EDZ08780.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Javiana str. GA_MM04042433]
          Length = 1160

 Score = 1120 bits (2896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1047 (40%), Positives = 616/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLEGDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +F+D+PEALENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSIDEMCELFADIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|253687352|ref|YP_003016542.1| DNA polymerase III, alpha subunit [Pectobacterium carotovorum subsp.
            carotovorum PC1]
 gi|251753930|gb|ACT12006.1| DNA polymerase III, alpha subunit [Pectobacterium carotovorum subsp.
            carotovorum PC1]
          Length = 1160

 Score = 1120 bits (2896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1045 (40%), Positives = 612/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ K AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          +       +  + +L    EGYQ L  L+S+ Y    G   
Sbjct: 64   PIIGADFCV----------ESDELGDELAHLTILAMNNEGYQNLTLLISQAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E   EGLI+L+GG  G + R     +   AE+ L  +++ F  R Y+ L R
Sbjct: 114  PTIDRNWLIE-HREGLILLSGGRRGDVGRFLLRGNQTQAEQCLAFYQEYFPQRYYLELIR 172

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
              R  +       V+LA  H LP+VATN   F+S +D++AH++ +A+     +    RP 
Sbjct: 173  TSRPDEESYLHAAVELATKHGLPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L   +  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVECSKKGLEERLEFLFPDPEVRAARRPEYDERLDIELGVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 527  PLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKQGQEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   G++  +AV IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKNPVEMAKQRGGFEDGAKARGVNGELAVKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA      F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F    +     + +         
Sbjct: 887  AFDRLGPHRAALMNSLADALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSTVPPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V++ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTAVGLVLAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGVCTLDDRSGRLEIMLF 1031


>gi|251790730|ref|YP_003005451.1| DNA polymerase III subunit alpha [Dickeya zeae Ech1591]
 gi|247539351|gb|ACT07972.1| DNA polymerase III, alpha subunit [Dickeya zeae Ech1591]
          Length = 1160

 Score = 1120 bits (2896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1045 (40%), Positives = 614/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G   +  ++ K AA   PA+AITD  NL   ++F   A +AGI+
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKIGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+SR Y    G   
Sbjct: 64   PIIGADFYL----------QSEELGDELAHLTVLAMNNEGYQNLTLLISRAYQRGYGADG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E    GL++L+GG  G I +     +  + E+ +  +++ F  R Y+ L R
Sbjct: 114  PTIDRAWLVE-HQAGLLLLSGGRHGDIGKFLLRGNQALVEQCVAFYQQHFPQRFYLELTR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA  H LP++ATN   F+S++D++AH++ +A+     +    RP 
Sbjct: 173  TGRPDEESYLHAAVTLATAHGLPVIATNEVCFISQDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEDEMCELFADIPEALINTVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L   A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVMCAKKGLEERLAFLFPDEDVRAQRRPEYDERLDIELGVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K      D+
Sbjct: 527  PLYCDPEGHHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARREKQGLEPVDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD  ++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKNSFGMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIQWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA + G+   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFKEGAERMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +KI     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA  +   F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRDLFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F     T    + +         
Sbjct: 887  AFDRLGPHRAALMNSLADAMKSADQHAKAEAIGQADMFGVLAETPEQVEQSYSTVPPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG       +V++ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLVLAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGVCTLDDRSGRLEVMLF 1031


>gi|254508656|ref|ZP_05120771.1| putative DNA polymerase IIIalpha subunit subfamily [Vibrio
            parahaemolyticus 16]
 gi|219548413|gb|EED25423.1| putative DNA polymerase IIIalpha subunit subfamily [Vibrio
            parahaemolyticus 16]
          Length = 1159

 Score = 1120 bits (2896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1046 (40%), Positives = 615/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A   G
Sbjct: 2    SDPKFVHLRVHSDFSMVDGLSKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGCG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG    +          Q       +  + +L +   GY+ L  L+S+ YL    +
Sbjct: 62   IKPIIGADFAM----------QSAAFGDELTKLTVLAADNTGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+ +EGLI+L+GG SG I +A    + + A++    ++  F DR Y+ L
Sbjct: 112  HQPVIDKEWLVEL-SEGLILLSGGKSGEIGKALLKGNQKTAQECAEFYQTHFADRFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        ++ A   ELP+VATN+ +FL E  ++AH++ +A+     +    R
Sbjct: 171  TRTGRADEESYLHFALEFAEQFELPVVATNDVVFLDETLFDAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             EE   L  K+  GLE RL         +     +Y +RL  EL VI  M F GYFLIV 
Sbjct: 286  MEETEFLVMKSEEGLEERLEFLFPDPKVRAERRPEYDERLRIELEVINNMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +    E   AD  V  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFKAEPALPELYDADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLAKEGKAPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  +++LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  AIESIPLDDQASFNLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECLRMKLKVLPPDINSGLYRFN 824

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y + AIKGVG      I+E+   D  F  L DFC+R+D KK+N+RV+E L++
Sbjct: 825  VDEDGAIVYGIGAIKGVGEGPIEAILESRNRDGHFKDLFDFCARIDLKKVNKRVIEKLIY 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ SLD+  K A    +       ++F    +     +    K +  
Sbjct: 885  AGALDRLGPHRAAMMASLDDAVKAASQHHQAEAFGQSDLFGVLTEAPEEVENKYTKVAPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ ++ +V++ + 
Sbjct: 945  PEKVWLEGERTTLGLYLTGHPINAYLKELGKYTSCRLKDATPTRRDQSVTVSGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|315179360|gb|ADT86274.1| DNA polymerase III subunit alpha [Vibrio furnissii NCTC 11218]
          Length = 1159

 Score = 1119 bits (2895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1046 (39%), Positives = 607/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G
Sbjct: 2    SDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYGTAHGCG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI+G    +          + +     +  + +L     GY+ L  L+S  YL    +
Sbjct: 62   VKPIVGADFLV----------RSEEFGDELTRLTVLAKDNVGYKNLTLLISDAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL +   EGLI+L+G   G I RA    +  + EK +  ++  F D  Y+ L
Sbjct: 112  NQPVIDKEWLIKYA-EGLILLSGAKGGDIGRALLKGNQALVEKCVAFYQTHFTDNFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        + LA   ELP+VATN+ +F+  + ++AH++ +A+     +    R
Sbjct: 171  VRTGRADEENYLHFALDLAEQAELPVVATNDVVFIDPDQFDAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +   YL++  EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSAQQYLRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             EE   L  K+  GLE RL         +      Y +RL+ EL VI +M F GYFLIV 
Sbjct: 286  MEETEFLVKKSHEGLEERLEFLFPDPAVRAERRPAYDERLEIELKVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ K+IP 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKMIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +   +E   AD  V  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFKAEPALQELYDADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYCDSEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGLINPRREKAGEPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP  D  ++ +L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIESIPLVDPASFRMLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLAGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F SGA  NG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQSGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTH+P EF+AA MT +MDN EK+     +  +  + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHFPAEFMAAVMTADMDNTEKVVGLVDECMRMGLTVLPPDINSGLYRFN 824

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D   I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDTGAIVYGIGAIKGVGEGPIEVILEARNKGGYFKDLFDFCARIDIKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ SLD+  K A    +       ++F          +    +    
Sbjct: 885  AGALDRLGPHRAAMMASLDDAVKAASQHHQAEAFGQADMFGVLTDAPEEVERKYIQVPEW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L K       E++ T R  ++ +A +V++ + 
Sbjct: 945  PEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLNEAMPTRRDQSLTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGNRIGLMTLDDRSGRMEVMLF 1030


>gi|260902378|ref|ZP_05910773.1| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus AQ4037]
 gi|308110181|gb|EFO47721.1| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus AQ4037]
 gi|328474386|gb|EGF45191.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus 10329]
          Length = 1159

 Score = 1119 bits (2895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1046 (40%), Positives = 615/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL++HS +S+++G   +  I+ K+A    PA+A+TD  NL   ++F   A  +G
Sbjct: 2    SDPKFVHLRIHSDFSMVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG    +          Q       +  + +L +   GY+ L  L+S+ YL    +
Sbjct: 62   VKPIIGADFKM----------QSDEFGEELTQLTVLAADNAGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL E+ +EGLI+L+G  +G I +A    + ++ E  +  +K+ F DR Y+ L
Sbjct: 112  HQPVIDRAWLAEM-SEGLIVLSGAKNGDIGKALLKGNRKLVESCVEFYKQHFPDRFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        + LA  H+LP+VATN  +FLS + ++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEETYLHFAIDLAEQHDLPVVATNEVVFLSADLFDAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             EE   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  MEETEFLVMKSREGLEERLEFLFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +    E   AD  V  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFKAEPALPELYEADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP +D  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFN 824

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  +  I Y + AIKGVG      I+EA      F  L DFC+R+D K++N+RV+E L++
Sbjct: 825  VDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKLIY 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ SL++  K A    +       ++F          +    +    
Sbjct: 885  AGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQGDMFGVLTDAPEEVENKYTQVPPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ + 
Sbjct: 945  PEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|260767810|ref|ZP_05876745.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
 gi|260617319|gb|EEX42503.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
          Length = 1159

 Score = 1119 bits (2895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1046 (39%), Positives = 607/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G
Sbjct: 2    SDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYGTAHGCG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI+G    +          + +     +  + +L     GY+ L  L+S  YL    +
Sbjct: 62   VKPIVGADFLV----------RSEEFGDELTRLTVLAKDNVGYKNLTLLISDAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL +   EGLI+L+G   G I RA    +  + EK +  ++  F D  Y+ L
Sbjct: 112  NQPVIDKEWLIKYA-EGLILLSGAKGGDIGRALLKGNQALVEKCVAFYQTHFTDNFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        ++LA   ELP+VATN+ +F+  + ++AH++ +A+     +    R
Sbjct: 171  VRTGRADEENYLHFALELAEQAELPVVATNDVVFIDPDQFDAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +   YL++  EM  +F D+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSAQQYLRSEEEMCELFDDIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             EE   L  K+  GLE RL         +      Y +RL+ EL VI +M F GYFLIV 
Sbjct: 286  MEETEFLVKKSHEGLEERLEFLFPDPAVRAERRPAYDERLEIELKVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ K+IP 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKMIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +   +E   AD  V  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFKAEPALQELYDADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYCDSEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGLINPRREKAGEPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP  D  ++ +L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIESIPLVDPASFRMLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLAGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F SGA  NG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQSGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTH+P EF+AA MT +MDN EK+     +  +  + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHFPAEFMAAVMTADMDNTEKVVGLVDECMRMGLTVLPPDINSGLYRFN 824

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D   I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDTGAIVYGIGAIKGVGEGPIEVILEARNKGGYFKDLFDFCARIDIKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ SLD+  K A    +       ++F          +    +    
Sbjct: 885  AGALDRLGPHRAAMMASLDDAVKAASQHHQAEAFGQADMFGVLTDAPEEVERKYIQVPEW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L K       E++ T R  ++ +A +V++ + 
Sbjct: 945  PEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLNEAMPTRRDQSLTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGNRIGLMTLDDRSGRMEVMLF 1030


>gi|153839483|ref|ZP_01992150.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AQ3810]
 gi|149746988|gb|EDM57976.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AQ3810]
          Length = 1159

 Score = 1119 bits (2895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1046 (40%), Positives = 615/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL++HS +S+++G   +  I+ K+A    PA+A+TD  NL   ++F   A  +G
Sbjct: 2    SDPKFVHLRIHSDFSMVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG    +          Q       +  + +L +   GY+ L  L+S+ YL    +
Sbjct: 62   VKPIIGADFKM----------QSDEFGEELTQLTVLAADNAGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL E+ +EGLI+L+G  +G I +A    + ++ E  +  +K+ F DR Y+ L
Sbjct: 112  HQPVIDRAWLAEM-SEGLIVLSGAKNGDIGKALLKGNRKLVESCVEFYKQHFPDRFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        + LA  H+LP+VATN  +FLS + ++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEETYLHFAIDLAEQHDLPVVATNEVVFLSADLFDAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             EE   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  MEETEFLVMKSREGLEERLEFLFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +    E   AD  V  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFKAEPALPELYEADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP +D  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFN 824

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  +  I Y + AIKGVG      I+EA      F  L DFC+R+D K++N+RV+E L++
Sbjct: 825  VDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKLIY 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ SL++  K A    +       ++F          +    +    
Sbjct: 885  AGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQGDMFGVLTDAPEEVENKYTQVPPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ + 
Sbjct: 945  PEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|28899077|ref|NP_798682.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus RIMD
            2210633]
 gi|260876841|ref|ZP_05889196.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AN-5034]
 gi|260897273|ref|ZP_05905769.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus Peru-466]
 gi|308125447|ref|ZP_05775347.2| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus K5030]
 gi|28807301|dbj|BAC60566.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus RIMD
            2210633]
 gi|308085355|gb|EFO35050.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus Peru-466]
 gi|308091396|gb|EFO41091.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AN-5034]
 gi|308113977|gb|EFO51517.1| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus K5030]
          Length = 1159

 Score = 1119 bits (2895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1046 (40%), Positives = 615/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL++HS +S+++G   +  I+ K+A    PA+A+TD  NL   ++F   A  +G
Sbjct: 2    SDPKFVHLRIHSDFSMVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG    +          Q       +  + +L +   GY+ L  L+S+ YL    +
Sbjct: 62   VKPIIGADFKM----------QSDEFGEELTQLTVLAADNAGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL E+ +EGLI+L+G  +G I +A    + ++ E  +  +K+ F DR Y+ L
Sbjct: 112  HQPVIDRAWLAEM-SEGLIVLSGAKNGDIGKALLKGNRKLVESCVEFYKQHFQDRFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        + LA  H+LP+VATN  +FLS + ++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEETYLHFAIDLAEQHDLPVVATNEVVFLSADLFDAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             EE   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  MEETEFLVMKSREGLEERLEFLFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +    E   AD  V  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFKAEPALPELYEADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP +D  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFN 824

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  +  I Y + AIKGVG      I+EA      F  L DFC+R+D K++N+RV+E L++
Sbjct: 825  VDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKLIY 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ SL++  K A    +       ++F          +    +    
Sbjct: 885  AGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQGDMFGVLTDAPEEVENKYTQVPPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ + 
Sbjct: 945  PEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|311280847|ref|YP_003943078.1| DNA polymerase III, alpha subunit [Enterobacter cloacae SCF1]
 gi|308750042|gb|ADO49794.1| DNA polymerase III, alpha subunit [Enterobacter cloacae SCF1]
          Length = 1160

 Score = 1119 bits (2895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1045 (40%), Positives = 613/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG++
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTGHGAGLK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G    +          Q       +  + +L +   GYQ L  L+SR Y    G Q 
Sbjct: 64   PIVGADFHV----------QNDLLGDEMSQLTVLAANNTGYQNLTLLISRAYQRGYGAQG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + ++    ++ + E+    +++ F DR ++ L R
Sbjct: 114  PWIDRDWLVEL-NEGLILLSGGRMGDVGKSLLRGNAALVEQCAAFYEEHFPDRYFLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP 
Sbjct: 173  TGRADEESYLHAAVKLAEERGLPVVATNDVRFIDAGDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   Y+++  EM  +F+D+PEALEN+VEIA+RC+  +++    LP+F   E       
Sbjct: 233  NYSSQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGEM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +      Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVVKSKEGLEERLEFLFPDEAERKEKRPPYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIDHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        +D+
Sbjct: 527  PLYCDESGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRRAKQGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRGTFEEGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA  +   F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F    +     + +         
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG     A +V++ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPITQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|154271|gb|AAA27191.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica
            serovar Typhimurium]
          Length = 1160

 Score = 1119 bits (2894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1047 (40%), Positives = 614/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ 
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVS 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP E +AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEIMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D     Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     + +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTASGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|163868512|ref|YP_001609721.1| DNA polymerase III subunit alpha [Bartonella tribocorum CIP 105476]
 gi|161018168|emb|CAK01726.1| DNA polymerase III alpha subunit [Bartonella tribocorum CIP 105476]
          Length = 1155

 Score = 1119 bits (2894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 592/1038 (57%), Positives = 755/1038 (72%), Gaps = 8/1038 (0%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            + +Y    P F+HL+VHS+YSLLEGAL +  I+ +  +DQ PAIAITDTNNLF ALEFSQ
Sbjct: 1    MQEYKNSLPRFIHLRVHSAYSLLEGALKIPQIIQQAISDQAPAIAITDTNNLFGALEFSQ 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFP-TVPSIVLLVSTAEGYQRLIELVSRM 119
               + G+QPIIGCQL ID  D    +   K        SI+L  ++  GY  L+ LVSR 
Sbjct: 61   YCLSHGVQPIIGCQLAIDFCDENDHSRLVKGRHASDFCSIILFAASETGYAHLVRLVSRA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            YL         I   WL E  +EG+I LTGG  GPI+ A      + A +RL+  KK+F 
Sbjct: 121  YLDKCDTDPPHIKADWLSE-HSEGIIALTGGKGGPINLALSEEKKERAVERLIYLKKIFS 179

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            DRLYV LQRH  YDR  E+++++LAY HE+PLVATN + FL  E YEAHD LMAV+   +
Sbjct: 180  DRLYVELQRHGSYDRGVEAELIELAYAHEIPLVATNEAFFLKREGYEAHDALMAVSEGQI 239

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            VS  DR RVTPDHYLK++ EMV++FSDLPEALEN+VEIA RC     +  PILPRFIE+ 
Sbjct: 240  VSNPDRKRVTPDHYLKSQDEMVALFSDLPEALENSVEIALRCHIATPLRKPILPRFIEQS 299

Query: 300  C--DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               ++  + E++EL N+A AGL++RL    +A+GY   DY QRLD+E++VI RM+FSGYF
Sbjct: 300  AHSENTLEAEDSELLNQAKAGLKMRLETIGLAEGYTIADYEQRLDYEVSVITRMQFSGYF 359

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV+DFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPD
Sbjct: 360  LIVSDFIKWAKIHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPD 419

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ+RR+EVI+YVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QVD L K
Sbjct: 420  FDIDFCQERREEVIQYVQKKYGRDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTK 479

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   V L  AI D+ +F E +  DP V R L+I+ +LEGLYRHASTHAAGIVIGD
Sbjct: 480  LIPATPGSQVELADAIKDEPKFEEEKKKDPVVGRALDIALQLEGLYRHASTHAAGIVIGD 539

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL +LVPMYRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++G K+
Sbjct: 540  RPLWELVPMYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARQGDKI 599

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DLS IP +D  TY ++    T+G+FQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++
Sbjct: 600  DLSNIPLNDEVTYAMMARGETVGVFQVESSGMRKALIGMKPDRIEDIIALVALYRPGPME 659

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            NI  YN RK+G+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRA
Sbjct: 660  NIPTYNARKHGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRA 719

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKKI  EM KQ+ RF++GA   G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQT
Sbjct: 720  MGKKIHAEMQKQRTRFVNGAVAGGVDKEQADIIFDLLAKFADYGFNKSHAAAYAIVSYQT 779

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A+MK +YPVEFLAASMT +M N +K+  F ++A +  I+++ PS+ T    F+VGD+ IY
Sbjct: 780  AYMKANYPVEFLAASMTHDMTNTDKLNDFRREALRLGIEVIAPSIQTSHRVFEVGDHCIY 839

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            YSLAAIKGVG T   HI+    +K F  LEDFC+RVD + +N+R +ESLV AGA DCF  
Sbjct: 840  YSLAAIKGVGETVVDHIVACRGNKIFKDLEDFCARVDLRIVNKRAMESLVCAGAFDCFNI 899

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LL +L  I   A  +  N ++   +IF  E G     I L + +    + +   E 
Sbjct: 900  AREILLANLGTIHARALRILDNNSSGQFDIFGMEGGLKEPLI-LSQTTPWLPAEKLYREF 958

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSR 1014
            + +GFYFS HPLD Y+ IL K  ++ +      ++G     RLA  VV+K  +KT+ G +
Sbjct: 959  QAIGFYFSAHPLDEYQTILAKKRVQTWSHFANAVKGGATAARLAGTVVAKNVRKTKSGKK 1018

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            +G + FS+ + +YEA  F
Sbjct: 1019 MGIIHFSDTSGQYEAILF 1036


>gi|307129835|ref|YP_003881851.1| DNA polymerase III subunit alpha [Dickeya dadantii 3937]
 gi|306527364|gb|ADM97294.1| DNA polymerase III alpha subunit [Dickeya dadantii 3937]
          Length = 1160

 Score = 1118 bits (2893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1045 (40%), Positives = 615/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+SR Y    G   
Sbjct: 64   PIIGADFYL----------QSEELGDELAHLTILAMNNEGYQNLTLLISRAYQRGYGADG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E    GL++L+GG  G I +     +  + E+ +  +++ F  R Y+ L R
Sbjct: 114  PTIDRAWLVE-HQAGLLLLSGGRHGDIGKFLLRGNQVLVEQSVAFYQQHFPQRFYLELVR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V+LA  H LP+VATN+  F+S++D+EAH++ +A+     +    RP 
Sbjct: 173  TGRPDEESYLHAAVELATAHGLPVVATNDVCFISQDDFEAHEIRVAIHDGFTLDDPKRPK 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSVQQYMRSEEEMCELFADIPEALINTVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L   +  GLE RL         +     +Y +RL+ ELNVI +M F GYFLIV +F
Sbjct: 288  TEDYLVMCSKKGLEERLTFLFPDEEVRAQRRPEYDERLEIELNVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDLVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +      Q    +D+
Sbjct: 527  PLYCDPEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKQELEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIEWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA   G+   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFKEGAETMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +KI     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA  +   F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNNDGYFRDLFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948
            A D  G  R  L+ SL +  K A+   K       ++F     T    + +         
Sbjct: 887  AFDRLGPHRAALMNSLADAMKSAEQHAKAEAIGQADMFGVLAETPEQVEQSYSTVPPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG       +V++ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLVLAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGVCTLDDRSGRLEVMLF 1031


>gi|940886|gb|AAC44578.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae C6706]
          Length = 1159

 Score = 1118 bits (2892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1046 (40%), Positives = 613/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G
Sbjct: 2    SDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +
Sbjct: 62   VKPIIGA----------DFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L
Sbjct: 112  HQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 171  IRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 231  PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFL+V 
Sbjct: 286  MAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLVVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +   +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFIAEPELKELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L+   G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPPYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ S+D+  + A    +       ++F          +    +    
Sbjct: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++  A +V++ + 
Sbjct: 945  PEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTAAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   +
Sbjct: 1005 MTTKRGTRIGLMTLDDRSGRLEVMLY 1030


>gi|242240381|ref|YP_002988562.1| DNA polymerase III subunit alpha [Dickeya dadantii Ech703]
 gi|242132438|gb|ACS86740.1| DNA polymerase III, alpha subunit [Dickeya dadantii Ech703]
          Length = 1160

 Score = 1118 bits (2892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1045 (40%), Positives = 618/1045 (59%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ K AA   PAIAITD  NL   ++F   A  AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPAIAITDFTNLCGLVKFYGGAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    +GYQ L  L+SR Y    G   
Sbjct: 64   PIIGADFYL----------QSEELGDELARLSVLAMNNDGYQNLTLLISRAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E    GL++L+GG  G I +     +  + ++ +  +++ F  R Y+ L R
Sbjct: 114  PTIEREWLVE-HQAGLLLLSGGRQGDIGKFLLRGNQTLVDQCVAFYQQHFPQRFYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D       VV LA    LP+VATN+  F+SE+D++AH++ +A+     +    RP 
Sbjct: 173  TGRPDEESYLHAVVALATERGLPVVATNDVCFISEDDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEALEN+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEQEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RL         +     +Y +RL+ ELNVI +M F GYFLIV +F
Sbjct: 288  TEDYLVLRAREGLEERLVFLFPDEEERANRRPEYDERLEIELNVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K NN+PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNNVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDLVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLGEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K      D+
Sbjct: 527  PLYCDPEGHHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINPRREKQGLEPVDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA K G+   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFKEGAEKMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +KI     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I+EA  +   F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  DAGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRDLFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A+   +       ++F    +     + +         
Sbjct: 887  AFDRLGPHRAALMNSLPDAMKSAEQHARAEAIGQSDMFGVLTESPEQVEQSYSTVPPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG       +V++ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPINQYLKEIERYAGGGRLKDMHPTERGKVTIAVGLVLAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGVCTLDDRSGRLEVMLF 1031


>gi|152968778|ref|YP_001333887.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae MGH 78578]
 gi|238893180|ref|YP_002917914.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae NTUH-K2044]
 gi|150953627|gb|ABR75657.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae MGH 78578]
 gi|238545496|dbj|BAH61847.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae NTUH-K2044]
          Length = 1160

 Score = 1118 bits (2892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1045 (40%), Positives = 612/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G    +          Q          + +L +   GYQ L  L+SR Y    G   
Sbjct: 64   PIVGADFHV----------QCDLLGDEFTELTVLAANNTGYQNLTLLISRAYQRGYGALG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+GG  G +  +    +  + E+ +  +++ F DR ++ L R
Sbjct: 114  PWIDRDWLVE-HQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  FL   D++AH++ +A+     +    RP 
Sbjct: 173  TGRQDEEAYLHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y QRLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVMKSKEGLEERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            P+Y D +   PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D+
Sbjct: 527  PLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEGPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA  +   F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F    +     + +         
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|262044745|ref|ZP_06017792.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
            ATCC 13884]
 gi|259037895|gb|EEW39119.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
            ATCC 13884]
          Length = 1160

 Score = 1117 bits (2890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1045 (40%), Positives = 612/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHVAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G    +          Q          + +L +   GYQ L  L+SR Y    G   
Sbjct: 64   PIVGADFHV----------QCDLLGDEFTELTVLAANNTGYQNLTLLISRAYQRGYGALG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+GG  G +  +    +  + E+ +  +++ F DR ++ L R
Sbjct: 114  PWIDRDWLVE-HQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  FL   D++AH++ +A+     +    RP 
Sbjct: 173  TGRQDEEAYLHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y QRLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVMKSKEGLEERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            P+Y D +   PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D+
Sbjct: 527  PLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEGPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA  +   F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F    +     + +         
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|206579408|ref|YP_002240328.1| DNA polymerase III, alpha subunit [Klebsiella pneumoniae 342]
 gi|288937034|ref|YP_003441093.1| DNA polymerase III subunit alpha [Klebsiella variicola At-22]
 gi|290512455|ref|ZP_06551821.1| DNA polymerase III subunit alpha [Klebsiella sp. 1_1_55]
 gi|206568466|gb|ACI10242.1| DNA polymerase III, alpha subunit [Klebsiella pneumoniae 342]
 gi|288891743|gb|ADC60061.1| DNA polymerase III, alpha subunit [Klebsiella variicola At-22]
 gi|289774796|gb|EFD82798.1| DNA polymerase III subunit alpha [Klebsiella sp. 1_1_55]
          Length = 1160

 Score = 1117 bits (2890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1045 (40%), Positives = 613/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G    +          Q          + +L +   GYQ L  L+SR Y    G   
Sbjct: 64   PIVGADFHV----------QCDLLGDEFTELTVLAANNTGYQNLTLLISRAYQRGYGALG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+GG  G +  +    +  + E+ +  +++ F DR ++ L R
Sbjct: 114  PWIDRDWLVE-HQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  FL   D++AH++ +A+     +    RP 
Sbjct: 173  TGRQDEEAYLHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEALEN+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y QRLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVMKSKEGLEERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            P+Y D +   PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D+
Sbjct: 527  PLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEGPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSIFEDGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA  +   F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F    +     + +         
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|295098673|emb|CBK87763.1| DNA polymerase III, alpha subunit [Enterobacter cloacae subsp.
            cloacae NCTC 9394]
          Length = 1160

 Score = 1117 bits (2889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1045 (40%), Positives = 615/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F   A  AG++
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTAHGAGLK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G    +          Q +     +  I +L     GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFHV----------QSELLGDEMTQISVLAMNNTGYQNLTLLISKAYQRGYGALG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGL++++GG  G + +     ++ + ++ +  +++ F DR Y+ L R
Sbjct: 114  PWIDRDWLAEL-NEGLLLISGGRMGDVGKCLLRGNNALVDQCVSFYEEYFPDRYYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  FL   D++AH++ +A+     +    RP 
Sbjct: 173  TGRADEESYLHAAVALAEARGLPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   Y+++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSSQQYMRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVMKSKEGLEERLEFLFPDEAVRKEKRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 527  PLYCDEAGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSIFEDGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA  +   F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F    +     + +         
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYSNCQPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPINQYLKEIERYVGGHRLKDMHPTERGKITTAAGLVIAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|37680725|ref|NP_935334.1| DNA polymerase III subunit alpha [Vibrio vulnificus YJ016]
 gi|326423901|ref|NP_760750.2| DNA polymerase III subunit alpha [Vibrio vulnificus CMCP6]
 gi|37199474|dbj|BAC95305.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016]
 gi|319999277|gb|AAO10277.2| DNA polymerase III alpha subunit [Vibrio vulnificus CMCP6]
          Length = 1159

 Score = 1117 bits (2889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1046 (40%), Positives = 615/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL++HS +S+++G   +  ++ ++AA   PA+A+TD  NL   ++F   A   G
Sbjct: 2    SDPKFVHLRIHSDFSMVDGINKVPALVKQVAALGMPAMALTDFTNLCGLVKFYGAAHGNG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG    +          Q       +  + +L +   GY+ L  L+S+ YL    +
Sbjct: 62   IKPIIGADFKM----------QSPEFGDELTQLTVLAADNTGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+ +EGLI+L+G  +G I +A    + ++ E  +  +++ F DR YV L
Sbjct: 112  HQPVIDKEWLIEL-SEGLIILSGARNGEIGKALLKGNQKLVESCVDFYQQHFADRFYVEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        ++LA  ++LP+VATN  +F+ +E ++AH++ +A+     +    R
Sbjct: 171  IRTGRSDEETYLHFAIELAEQYDLPVVATNEVVFIGQELFDAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLWEYFLPAFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              E   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  MAETEFLVMKSKEGLEERLEFLFPDPEIRAQRRPEYDERLQVELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +    E   AD  V  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFKAEPALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYADAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKAPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++ +L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIESIPLDDPASFRILQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRATFEEGAVKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFN 824

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  +  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L++
Sbjct: 825  VDENGAIVYGIGAIKGVGEGPIDAILEARTKGGHFKDLFDFCARIDLKKVNKRVIEKLIY 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  L+ SLD+  K A    +       ++F          +    +    
Sbjct: 885  AGALDRLGPHRAALMASLDDAVKAASQHHQAEAFGQADMFGVLTDAPEEVEHKYIQVEPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ LA +V++ + 
Sbjct: 945  PEKVWLEGERETLGLYLTGHPVNAYLTELNKYTSCRLKDATPTRRDQSLTLAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|262276512|ref|ZP_06054321.1| DNA polymerase III alpha subunit [Grimontia hollisae CIP 101886]
 gi|262220320|gb|EEY71636.1| DNA polymerase III alpha subunit [Grimontia hollisae CIP 101886]
          Length = 1159

 Score = 1117 bits (2889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1046 (39%), Positives = 615/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A ++G
Sbjct: 2    SDPRFIHLRVHSDFSMVDGLGKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYNTAQSSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG    +          Q  T    +  I +L +   GY+ L  L+S+ YL    +
Sbjct: 62   VKPIIGADFKM----------QTDTFGDDLCQITVLAANNAGYKNLTLLISKAYLRGHIQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I + WL E+  +GLI+L+GG +G + +A    +  +A +    +++ F D  Y+ L
Sbjct: 112  HQPVIDIQWLAEL-KDGLIILSGGKNGDVGKALLKGNMALAAQCAAFYQQHFPDAYYIEL 170

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R  R  +       V+ A    LP+VATN   FL+ + ++AH++ +A+     +    R
Sbjct: 171  IRTGRADEEAYLHFAVEFAEEQGLPVVATNEVCFLTPDLFDAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL++  EM  +F D+PEAL NTVEIA+RC+  ++++   LP F  +  +   
Sbjct: 231  PKNYSPQQYLRSEEEMCELFQDIPEALANTVEIAKRCNVTVRLNEYFLPNFPTEGMEIG- 289

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                  L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 290  ----EFLIKKSKEGLEERLEFLFPDPEVRAEKRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMDKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLAELYEADEEVRELIDTCRILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K+     
Sbjct: 525  FAPLYCDSEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALSMINPRLEKMGQAPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  I  DD  ++ LL    T  +FQLES GM++ ++ ++PDC ED+IALV+L+RPGP+ 
Sbjct: 585  RIDAIKMDDQASFRLLQNAETTAVFQLESRGMKELIKRLKPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E +        H  +  +L  T G+I+YQEQVMQIAQ+L+GYSL  
Sbjct: 645  SGMVDNFIDRKHGREAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLAGYSLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADLLRRAMGKKKPEEMAKQRATFEQGAIKNGVDGELAMRIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTH+P EF+AA MT +MDN +KI    ++ R+  + I+PP VN     F 
Sbjct: 765  ALVSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVGLVEECRRMKLTILPPDVNAGLYRFN 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V +     Y + AIKGVG     +I++A  +   F  L DFC+R+D+KK+N+RV+E L+ 
Sbjct: 825  VNEKGEIVYGIGAIKGVGEAPIENIIKAREEGGYFRDLFDFCARIDTKKVNKRVIEKLIQ 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA+D  G  R  ++ SLD+  K A    +       ++F          +    K    
Sbjct: 885  SGAMDRLGPHRAAMMASLDDALKSASQHHQAEAFGQTDMFGVLTAAPEEVEHKYTKVPPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L+       E++ AT R     +A +V++ + 
Sbjct: 945  PDKVWLEGERETLGLYLTGHPINSYVKELKHYITWRLEDAHATKRDVVSTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGTRIGILTLDDRSGRMEVMLF 1030


>gi|27379977|ref|NP_771506.1| DNA polymerase III subunit alpha [Bradyrhizobium japonicum USDA 110]
 gi|27353130|dbj|BAC50131.1| DNA polymerase III alpha chain [Bradyrhizobium japonicum USDA 110]
          Length = 1167

 Score = 1117 bits (2889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 523/1032 (50%), Positives = 702/1032 (68%), Gaps = 14/1032 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VHS+YSLL+G++ +  + +    D QPA+A+TDT+NLF ALEFS K   +GI
Sbjct: 3    SAGFVHLHVHSAYSLLKGSIKIGKLAELAKKDHQPALALTDTDNLFGALEFSDKMAGSGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            QPI+GC+L ID  D          P      +VLL +   GY+ L+ L SR +L      
Sbjct: 63   QPIVGCELAIDFGDQDPTARNAIGP----SRVVLLAAQERGYRSLMRLNSRAFLETPDSH 118

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            +  I   W  +  TEGLI LTGG  GPI  A     +++A  R      LFGDRLY+ LQ
Sbjct: 119  APFIKFDWF-DGETEGLIALTGGPDGPISLALAGGMAELAATRCERLATLFGDRLYIELQ 177

Query: 188  RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH    +R  ES ++ +AY   LPLVATN   F + +DYEAHD L+ +A   ++++ DR 
Sbjct: 178  RHNIDKERRVESGLIDIAYAKGLPLVATNEPYFAATDDYEAHDALLCIAGGRLIAESDRV 237

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            ++TPDH  K R+EM  +F+D+PEAL +TVEIA RCSF      PILP F           
Sbjct: 238  QLTPDHRFKTRAEMAVLFADIPEALASTVEIAERCSFRPMTRKPILPFFTVGAAASSDAA 297

Query: 307  EENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  L+ +A  GL  RL    +++G   +DY +RL FEL+VI RMK++GYFLIV+DFI
Sbjct: 298  AVEAAELKRQAEEGLANRLRVHGLSQGTTEEDYSKRLAFELDVIMRMKYAGYFLIVSDFI 357

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK   IPVGPGRGSGAGS+ A+ALTITD+DP++F LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 358  KWAKSQGIPVGPGRGSGAGSLVAWALTITDLDPIKFGLLFERFLNPERVSMPDFDIDFCQ 417

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR EVI+YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P +PA
Sbjct: 418  DRRGEVIQYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA 477

Query: 485  HPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             PV+L A I  + + +  R  DP V R  +I+Q+LEGL RHASTHAAGIVIGDRPLS+LV
Sbjct: 478  APVTLAAAIESEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELV 537

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  +   L  R + VDL+ +P 
Sbjct: 538  PLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVACKLLKPRDIHVDLATLPI 597

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD E+Y +L     +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  Y +
Sbjct: 598  DDAESYQMLARGEVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCS 657

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ++SGYSL +AD+LRRAMGKKI+ 
Sbjct: 658  RKHGDEEPEYLHPVLEPILKETFGVIIYQEQVMQIAQVMSGYSLGDADLLRRAMGKKIRA 717

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMDKQ++ F++GA KNG+ K  A  IFELLAKFADYGFNKSHAAAYA++SY TA+MK HY
Sbjct: 718  EMDKQRDIFVAGAVKNGVPKGQAETIFELLAKFADYGFNKSHAAAYALVSYHTAYMKAHY 777

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+AASMTL+++N +K+ +F  +A++  I++ PP++N     F+VG+  IYY+LAA+K
Sbjct: 778  PVEFIAASMTLDLNNTDKLSEFRSEAQRLGIKVEPPNINRSGATFEVGEKTIYYALAALK 837

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+E    +  F SL DF +RV+ + +N+R++ESL  AGA D    +R ++ 
Sbjct: 838  GVGIQAIDQIIEERTKNGLFTSLADFAARVNPRAINKRIIESLAAAGAFDTLEPNRARVF 897

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
               D I    Q   +  T    ++F       +  I L +      + R   E   +GF+
Sbjct: 898  AGADAILAACQRAHEAATIGQNDMFGMSAD--APTIMLPQIEAWLPAERLRREYDAIGFF 955

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAMVVSKQQKKTRKGSRIGWVTF 1020
             SGHPLD Y  +L+++ ++ + E    ++ G    ++AA VVS+ +++T+ G+++G +  
Sbjct: 956  LSGHPLDDYATVLKRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGNKMGIMGL 1015

Query: 1021 SEPAKEYEANFF 1032
            S+P   +EA  F
Sbjct: 1016 SDPTGHFEAVLF 1027


>gi|210621647|ref|ZP_03292734.1| hypothetical protein CLOHIR_00679 [Clostridium hiranonis DSM 13275]
 gi|210154667|gb|EEA85673.1| hypothetical protein CLOHIR_00679 [Clostridium hiranonis DSM 13275]
          Length = 1192

 Score = 1116 bits (2888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1067 (36%), Positives = 603/1067 (56%), Gaps = 57/1067 (5%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +EK  +F HL VH+ YSLL+G   +  ++ +       A+AITD   +F A++F + A 
Sbjct: 3    RMEK--NFTHLHVHTEYSLLDGFSRVKTLVKRAKEKGMTAVAITDHGCMFGAIDFYKAAK 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            A GI+PIIGC++    +   K+T++          +VLL     GY+ LI++VS+ Y+ D
Sbjct: 61   AEGIKPIIGCEVYTAPR---KLTDKDPNYDKHQGHLVLLAKDMVGYKNLIKIVSKSYV-D 116

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RL 182
                  R  +  L++  ++GLI L+   +G + RA    +   A K  + ++ +FG+   
Sbjct: 117  GFYYKPRTDMDELKK-HSQGLIALSACLAGDVPRAIMNGNYDKARKLAMEYRDIFGNGNY 175

Query: 183  YVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +Q H   ++    ++VV+L+    +PLVATN+  ++ ++D +  D+LM +     + 
Sbjct: 176  YLEIQDHGLPEQKQVNTEVVRLSRELNIPLVATNDVHYVDKDDAKIQDILMCLQMQKTID 235

Query: 242  QKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             ++R +   D  YLK+R EM  +F +L EAL+NT EIA RC+   + H   LPR+   E 
Sbjct: 236  DENRMKFPSDEFYLKSREEMEQLFPELEEALDNTNEIAERCNVEFEFHKYHLPRYDVPEG 295

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                       R     GL  R  +         ++Y++RL++ELN I  M +  YFLIV
Sbjct: 296  ----YTTNGYFRELCQKGLVERYGEDC------PEEYKERLEYELNTIENMGYVEYFLIV 345

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI +AK+NNI VGPGRGS AGS+ AY L ITDIDP+++SLLFERFLNP+R+SMPD DI
Sbjct: 346  WDFINFAKQNNIMVGPGRGSAAGSIVAYTLKITDIDPMKYSLLFERFLNPERVSMPDIDI 405

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC +RR+EVI YV+ KYG + VAQIITFG++ AK A+RDV R L + Y++ D++ K IP
Sbjct: 406  DFCYERREEVIDYVKRKYGEDHVAQIITFGTMGAKIAIRDVARVLNVSYNKADQIAKEIP 465

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +    +  +A+  +    E   +D     +++IS++LEG  RHASTHAAG+VI   P+ 
Sbjct: 466  FELGMTID-KAMDSNPTLVELYESDAEAREVIDISKRLEGTLRHASTHAAGVVIARNPVD 524

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF------LAQRGV 594
            + VP+Y+    D   TQF M  +E+ GL+K DFLGL+TLT+++ +LD       +     
Sbjct: 525  EYVPLYK--HQDSITTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIELNRDIKGYTE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D S + +DD E +  L+   TLG+FQLESSGMR  ++ ++P+  EDI+A +SL+RPGP
Sbjct: 583  HIDFSKMEYDDDEVFETLSQGNTLGVFQLESSGMRNFMKQLKPNSFEDIVAGISLFRPGP 642

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D+I  Y   KN  EK+  I+  + P+L+ T G ++YQEQVMQ+ + L+GYS   +D++R
Sbjct: 643  MDSIPTYIENKNNPEKVTYINDKLRPILEVTYGCLVYQEQVMQVVRDLAGYSYGRSDLVR 702

Query: 715  RAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFN 762
            RAM KK  + M+++++ FI             G  +NGIS+  A  IF+ +  FA Y FN
Sbjct: 703  RAMSKKKMDVMEEERQYFIHGKFDDEGNIEIPGCIRNGISEEDANKIFDDMIDFARYAFN 762

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            KSHAAAY V++Y+TA++K HYPVEF+AA MT  M N +K+ ++ ++     I + PP +N
Sbjct: 763  KSHAAAYGVLAYETAYLKVHYPVEFMAALMTSIMGNSDKVVEYIRECNAIGIPVNPPDIN 822

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRV 881
                 F V  + I + LAA+K VG     +I+ E   +  F    DF  R+D+K  N+RV
Sbjct: 823  KSFSKFSVEGDSIRFGLAAVKNVGVNIIENIVKEREENGEFKDFVDFAKRLDTKDTNKRV 882

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-- 939
            +ESL+  GA D    +R  L+   +++ +      K       ++F        +     
Sbjct: 883  VESLIKCGAFDQISENRATLMAGYESVLESISMDRKKNVQGQISLFDAFSTQVEEAPEMQ 942

Query: 940  ----LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK---MGIKGYEESVA---- 988
                L      +   R   E+ VLG Y SGHPL  YK  L +   + +K   E       
Sbjct: 943  LSTNLPVVREFSEKERLNMEKEVLGMYLSGHPLSEYKSELDRKTSINMKKINELKEDEKT 1002

Query: 989  --TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +    + +  MV++K+   T++   + ++T  +     E   FP
Sbjct: 1003 YMKLHDREVIMGGMVIAKRIMTTKRNEIMAFITLEDLYGTIEVVVFP 1049


>gi|304391642|ref|ZP_07373584.1| DNA polymerase III subunit alpha [Ahrensia sp. R2A130]
 gi|303295871|gb|EFL90229.1| DNA polymerase III subunit alpha [Ahrensia sp. R2A130]
          Length = 1166

 Score = 1116 bits (2888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 556/1030 (53%), Positives = 721/1030 (70%), Gaps = 11/1030 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  HS+YSLLEGA+ L  ++   A D QPA+AITD +NLF ALEFS KA   G+QP
Sbjct: 22   PFVHLHTHSAYSLLEGAVPLAKLMTLAADDDQPALAITDRSNLFGALEFSSKAAKEGLQP 81

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFP--TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IIGC L++D  D  + +  G T       P++VLL S   GYQ LI LVS  Y+    + 
Sbjct: 82   IIGCTLEVDFDDEGRGSRSGSTQQAMVAFPTLVLLASDERGYQNLIRLVSLAYMEGAVES 141

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I +  L E   +GLI+LTGG+ GPID     +    A  RL      FGDRLY+ LQ
Sbjct: 142  RPHISMGQLVE-HNDGLIILTGGAHGPIDAMIVDDHPTEARARLARLNDAFGDRLYIELQ 200

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R  GY   RE +++ +AY   + +VATN   F   EDY AHD L+ +A   +VS+ DR R
Sbjct: 201  RQAGYSPKREGEILAMAYELGIGIVATNEVFFAKREDYSAHDTLICIAEGRMVSEDDRRR 260

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +TPDHYLK+ +EM  +FSDLPEA++NT  IA+RC+F +Q   PILP F     DD    E
Sbjct: 261  LTPDHYLKSTAEMNVLFSDLPEAIDNTTIIAQRCAFAVQELDPILPFFTGGVGDDPLAAE 320

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              ELR +AV GL+ RLA   +A GY  + Y +RL+FEL+VI  MKF GYFLIVADFI+WA
Sbjct: 321  AAELRKQAVDGLKDRLAVHPLADGYTREQYNERLEFELSVIENMKFPGYFLIVADFIKWA 380

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+  IPVGPGRGSGAGS+ A++LTITD+DPL+FSLLFERFLNP+R+SMPDFDIDFCQDRR
Sbjct: 381  KEQGIPVGPGRGSGAGSLVAWSLTITDLDPLQFSLLFERFLNPERVSMPDFDIDFCQDRR 440

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVIRYVQ+KYG ++VAQIITFG+LQA+A LRDVGR LQ+PY QVDRLCK++PN+PA+P 
Sbjct: 441  DEVIRYVQDKYGRDQVAQIITFGTLQARAVLRDVGRVLQLPYGQVDRLCKMVPNNPANPT 500

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             L +A+ +++   EAR  +  VD L++IS KLEGLYRHASTHAAGIVIGDRPL QLVP+Y
Sbjct: 501  PLYRAVVEEAGLIEAR-KEEEVDHLIDISLKLEGLYRHASTHAAGIVIGDRPLDQLVPLY 559

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            RD RSD+PVTQFNMKW+EKAGL+KFDFLGLKTLT+++ + ++L +R V+VD+  +  DD 
Sbjct: 560  RDPRSDMPVTQFNMKWVEKAGLVKFDFLGLKTLTVIRTAQNYLKERNVEVDVDKLTLDDE 619

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T+ +L    T+G+FQLES GMR+AL GM+ D  EDIIALV+LYRPGP++NI  YN RK+
Sbjct: 620  ATFKMLQRGETVGVFQLESMGMRKALIGMKADAFEDIIALVALYRPGPMENIPTYNARKH 679

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E+    HP I+ +LKETQGVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI  EM+
Sbjct: 680  GEEEADYYHPKIEHVLKETQGVIIYQEQVMQIAQILSGYSLGEADMLRRAMGKKIASEME 739

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+ RF+ G  KN I    A  IF++LAKFADYGFNKSHAAAYA++SYQTAW+K ++PVE
Sbjct: 740  AQRARFVDGCEKNDIKAQQANYIFDVLAKFADYGFNKSHAAAYALLSYQTAWLKANHPVE 799

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            FLA+ MTL+M N +K+  F ++A +  I+++ PSVN+  V F V D +I+Y+LAAIKGVG
Sbjct: 800  FLASLMTLDMGNTDKLNDFYREAVRAKIEVVAPSVNSSQVKFSVKDGKIHYALAAIKGVG 859

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 HI+E    D PF SL  F SRVD K+LNR++LE+L+ AGA D FG +R +L+  L
Sbjct: 860  AQAVAHIVEVRDRDGPFQSLTSFFSRVDPKQLNRKMLENLIHAGAFDGFGPAREELIGGL 919

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D +  ++  V +N      ++F  + G     + L K +   ++ R + E   +GFYFS 
Sbjct: 920  DRLIGHSVRVAENEAIGISDMFGGDTG--ETDVVLPKVAAWAAAERLQREHAAMGFYFSA 977

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNI---RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            HPLD Y+  L K+  + + +    ++ +      L   V S Q +KT++G R+G    S+
Sbjct: 978  HPLDEYQTTLEKLRAQSWADFQLAVKASGQAPGILGGTVSSIQYRKTKRGKRMGIGMLSD 1037

Query: 1023 PAKEYEANFF 1032
               ++E   F
Sbjct: 1038 ATGQFEVVLF 1047


>gi|227326551|ref|ZP_03830575.1| DNA polymerase III subunit alpha [Pectobacterium carotovorum subsp.
            carotovorum WPP14]
          Length = 1160

 Score = 1116 bits (2887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1045 (40%), Positives = 607/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ K AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          +       +  + +L     GYQ L  L+S  Y    G   
Sbjct: 64   PIIGADFCV----------ESDELGDELAHLTVLAMNNAGYQNLTLLISHAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+GG  G + R     +   AE+ L  +++ F  R Y+ L R
Sbjct: 114  PTIDRDWLIE-HQEGLILLSGGRRGDVGRFLLRGNQAQAEQCLAFYQEHFPQRYYLELIR 172

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
              R  +       V+LA  H +P+VATN   F+S +D++AH++ +A+     +    RP 
Sbjct: 173  TSRPDEESYLHAAVELATKHGIPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L   +  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVQCSKKGLEERLEFLFPDPEVRAERRPEYDERLDIELGVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        +D+
Sbjct: 527  PLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKQGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   G++  +AV IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKNPVEMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA      F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F          + +         
Sbjct: 887  AFDRLGPHRAALMNSLPDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVPPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V++ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTAVGLVLAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGVCTLDDRSGRLEIMLF 1031


>gi|319408651|emb|CBI82306.1| DNA polymerase III alpha subunit [Bartonella schoenbuchensis R1]
          Length = 1162

 Score = 1116 bits (2886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 592/1030 (57%), Positives = 749/1030 (72%), Gaps = 8/1030 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS+YSLLEGAL +  I+    +D  PAIAITDTNNLF ALEFSQ     G+Q
Sbjct: 16   PRFIHLRVHSAYSLLEGALKIRQIIQHAISDHAPAIAITDTNNLFGALEFSQYCFTDGVQ 75

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFP-TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQL ID +         K   P    SIVL  ++  GY  LI LVSR YL  +   
Sbjct: 76   PIIGCQLAIDFEHENCDPRLIKPRNPSDFASIVLFAASEAGYAHLISLVSRAYLDKRDTD 135

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL     EG+I LTGG +GPI+ A   N  + A + L   K++FGDRLYV LQ
Sbjct: 136  PPHIKADWLLSQ-NEGIIALTGGWNGPINLALVENKKERAVEHLTYLKQIFGDRLYVELQ 194

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  YDR  E+ +V+LAY HE+PLVATN + FL++E YEAHD LMAVA   +VS  +R R
Sbjct: 195  RHSSYDRKVEAALVELAYEHEIPLVATNEAFFLNKEGYEAHDALMAVAEGQIVSNPNRRR 254

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD--IQK 305
            VTPDHYLK++ EMVS+FSDLPEALEN+VEIA RC   +    PILPRF E+  D     +
Sbjct: 255  VTPDHYLKSQDEMVSLFSDLPEALENSVEIALRCHTFVPTRKPILPRFTERSVDPDSALE 314

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +E  EL N+A  GL++RL    +A+GY  +DY QRLD+E++VI RM+F GYFLIV+DFI+
Sbjct: 315  DEAKELLNQAKVGLKMRLETIGLAEGYTVEDYEQRLDYEISVITRMQFPGYFLIVSDFIK 374

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQD
Sbjct: 375  WAKGHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRISMPDFDIDFCQD 434

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QVD L KL+P+ P  
Sbjct: 435  RREEVIQYVQEKYGRDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVPSMPGS 494

Query: 486  PVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             + L  AI D+ +F+E +  +P + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVP
Sbjct: 495  NIELAVAIRDEPKFKEEKKKNPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVP 554

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMK +E+AGL+KFDFLGLKTLT+L+ + DF+A++GVKVDLS I  +
Sbjct: 555  MYRDPRSDMPVTQFNMKCVEQAGLVKFDFLGLKTLTVLKMATDFVARKGVKVDLSHISLN 614

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY +L    T+G+FQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++NI  YN R
Sbjct: 615  DETTYTMLARGETVGVFQVESSGMRKALIGMKPDRIEDIIALVALYRPGPMENIPTYNAR 674

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GKE+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI +E
Sbjct: 675  KHGKEEITSIHPKIDHLVKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIHKE 734

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+ RF+ GA   GI K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK H+P
Sbjct: 735  MQKQRTRFVRGAVDGGIDKDQADIIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKAHHP 794

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMT +M N +K+  F ++A +  I+++ P V T C  F++G+  IYYSLAAIKG
Sbjct: 795  VEFLAASMTCDMTNTDKLNDFRREALRLGIEVIAPCVQTSCRVFEIGEKCIYYSLAAIKG 854

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G     HI+    DKPF  LEDFC R+D + +N+R +ESL++AGALDCF  +R  LL S
Sbjct: 855  IGDLVVDHIVACRGDKPFKDLEDFCERIDPRIVNKRAMESLIYAGALDCFQVAREVLLAS 914

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L  +   A  +  N ++   +IF    G     I L + S  + + +  +E +V+GFYFS
Sbjct: 915  LGTLNARAIRIIDNNSSGQTDIFGMMGGPKEPLI-LSQASPWSLAEKLHHEFQVIGFYFS 973

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPLD Y+ IL K  ++ + +    ++      RLA  +V+KQ +KT+ G ++G + FS+
Sbjct: 974  AHPLDEYQTILTKKRVQIWSDFSDAVKKGATAARLAGTIVAKQIRKTKSGKKMGVIQFSD 1033

Query: 1023 PAKEYEANFF 1032
             +  YEA  F
Sbjct: 1034 TSGHYEAVIF 1043


>gi|227114702|ref|ZP_03828358.1| DNA polymerase III subunit alpha [Pectobacterium carotovorum subsp.
            brasiliensis PBR1692]
          Length = 1160

 Score = 1116 bits (2886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1045 (40%), Positives = 606/1045 (57%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ K AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          +       +  + +L     GYQ L  L+S  Y    G   
Sbjct: 64   PIIGADFCV----------ESDELGDELAHLTVLAMNNAGYQNLTLLISHAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+GG  G + R     +   AE+ L  +++ F  R Y+ L R
Sbjct: 114  PTIDRDWLVE-HQEGLILLSGGRRGDVGRFLLRGNQTQAEQCLAFYQEHFPQRYYLELIR 172

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
              R  +       V+LA  H +P+VATN   F+S +D++AH++ +A+     +    RP 
Sbjct: 173  TSRPDEESYLHAAVELATKHGVPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L   +  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVQCSKKGLEERLEFLFPDPEVRAERRPEYDERLDIELGVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        +D+
Sbjct: 527  PLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKQGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   G++  +AV IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKNPVEMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA      F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F          + +         
Sbjct: 887  AFDRLGPHRAALMNSLPDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVPPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP+  Y   + +       ++   T RG       +V++ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPITQYIKEIERYASGVRLKDMHPTDRGKMTTAVGLVLAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGVCTLDDRSGRLEIMLF 1031


>gi|296101353|ref|YP_003611499.1| DNA polymerase III subunit alpha [Enterobacter cloacae subsp. cloacae
            ATCC 13047]
 gi|295055812|gb|ADF60550.1| DNA polymerase III subunit alpha [Enterobacter cloacae subsp. cloacae
            ATCC 13047]
          Length = 1160

 Score = 1115 bits (2885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1045 (40%), Positives = 615/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F   A  AG++
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTAHGAGMK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G    +          Q +     +  I +L     GYQ L  L+S+ Y    G   
Sbjct: 64   PIVGADFHV----------QSELLGDEMTQISVLAMNNTGYQNLTLLISKAYQRGYGALG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGL++++GG  G + +     +S + ++ +  +++ F DR Y+ L R
Sbjct: 114  PWIDRDWLAEL-NEGLLLISGGRMGDVGKCLLRGNSALVDQCVSFYEEYFPDRYYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  FL   D++AH++ +A+     +    RP 
Sbjct: 173  TGRPDEESYLHAAVALAEARGLPVVATNDVRFLEAGDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   Y+++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP+F   E       
Sbjct: 233  NYSAQQYMRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGEM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVMKSKEGLEERLEFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 527  PLYCDEAGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA  +   F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F    +     + +         
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCLPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPINQYIKEIERYVGGYRLKDMHPTERGKITTAAGLVIAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|91977328|ref|YP_569987.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisB5]
 gi|91683784|gb|ABE40086.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB5]
          Length = 1151

 Score = 1115 bits (2884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 527/1034 (50%), Positives = 710/1034 (68%), Gaps = 14/1034 (1%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +  FVHL VHS+YSLL+G++ +  + +   AD QPA+A+TDT+N+F ALEFS K   +G
Sbjct: 2    SNAGFVHLHVHSAYSLLKGSMKIARLAELAKADHQPALALTDTDNMFGALEFSDKLAGSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPI+G +L ID  D  +  N   T       IVLL +   GY+ L+ L SR +L     
Sbjct: 62   IQPIVGLELGIDFGD--QDPNSRNTAVAAPSRIVLLATRERGYRSLMRLNSRAFLETPVN 119

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q   I   WL +  TE +I LTGG  GPI  A       +   R     + FGDRLYV L
Sbjct: 120  QPPHIKFDWL-DGETEDVIALTGGPDGPISLAMLT-DPALGRLRCERLAQAFGDRLYVEL 177

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH   ++R  E+ ++ +AY   LPLVATN   F + +D+EAHD L+ +A   ++++ DR
Sbjct: 178  QRHNTDFERRAEAGLIDVAYDMGLPLVATNEPHFATSDDFEAHDALLCIASGKLIAETDR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK----ECD 301
             ++TPDH  K R+EM  +F+DLPEAL +TVEIA+RC++      PILP F       + +
Sbjct: 238  VQLTPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVNDAE 297

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +    E  ELR +A  GL  R+    +++G   +DYR+RL FEL+VI RMK++GYFLIV+
Sbjct: 298  EAAAAEAAELRRQAEQGLADRMRIHGLSQGMSEEDYRKRLAFELDVITRMKYAGYFLIVS 357

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFDID
Sbjct: 358  DFIKWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFDID 417

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P 
Sbjct: 418  FCQDRRGEVIEYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQ 477

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA PVSL+ AI  + + +  R  DP V R  +I+QKLEGL RHASTHAAGIVIGDRPLS
Sbjct: 478  NPAAPVSLKQAIESEPKLQAFRDEDPVVARAFDIAQKLEGLTRHASTHAAGIVIGDRPLS 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
             LVPMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QR + +DL+ 
Sbjct: 538  DLVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRNIHIDLAT 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +  +D  +Y +L     +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  
Sbjct: 598  LGIEDAPSYQMLARGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPT 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMGKK
Sbjct: 658  YCARKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+ EM+KQ+  F+ GA++NG+ K  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+MK
Sbjct: 718  IRAEMEKQRAIFVEGATRNGVPKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEF+AASMTL+++N +K+ +F  +A++  I++  PSVN     F+VG+N IYY+LA
Sbjct: 778  AHYPVEFIAASMTLDLNNTDKLSEFRAEAQRLGIKVEAPSVNRSGPTFEVGENTIYYALA 837

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             +KGVG    + I+EA  DKPF SL DF +RV+ + +N+RV+ESL  AGA DC   +R +
Sbjct: 838  GLKGVGQHAVQMIVEARGDKPFSSLADFAARVNPRAINKRVIESLAAAGAFDCLDPNRAR 897

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +    D I    Q   +  T+   ++F       +  I L +      + R   E   +G
Sbjct: 898  VFAGADAIIAACQRSHEAATSGQNDMFGGLAD--APSIVLPQVEPWLPAERLRREYDAIG 955

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            F+ SGHPLD Y   L+++ ++ + +   A   G    ++AA VVS+ +++T+ G+++G +
Sbjct: 956  FFLSGHPLDDYATALKRLRVQSWSDFCKAVKSGATAGKVAATVVSRMERRTKTGNKMGIM 1015

Query: 1019 TFSEPAKEYEANFF 1032
              S+P   +EA  F
Sbjct: 1016 GLSDPTGHFEAVLF 1029


>gi|330830740|ref|YP_004393692.1| DNA polymerase III subunit alpha [Aeromonas veronii B565]
 gi|328805876|gb|AEB51075.1| DNA polymerase III, alpha subunit [Aeromonas veronii B565]
          Length = 1159

 Score = 1115 bits (2884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1044 (40%), Positives = 613/1044 (58%), Gaps = 37/1044 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +N I+   AA+  PA+A+TD  N+   + F   A   GI+
Sbjct: 4    PRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHGKGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G    +          Q          + LL    +GYQ +  L+SR Y     +  
Sbjct: 64   PIVGADFWV----------QSDELGDEQFRLTLLAMDNDGYQNITLLISRGYQRGHVQGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  SWL E   +G+I+L+GG  G + +     + Q+ E+ +  ++  F D  Y+ L R
Sbjct: 114  PVIDKSWLAE-HAKGVIVLSGGREGDVGKFLLKGNRQMTEQCVAFYQTHFPDAYYLELLR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D        V +A    LP+VATN  +FL+ +D++AH++ +A+     +  K RPR
Sbjct: 173  TGRPDEEVYLHMAVAIATEFALPVVATNEVVFLNADDFDAHEIRVAIHDGYTLMDKRRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL+++ EM  +F+D+PEALENTVEIA+RC+  +++    LP F   +       
Sbjct: 233  RYSPQQYLRSQEEMAELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVAKSKEGLEERLEFLFPDPQVRAERRPEYDERLDIELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRRDEVI +V + YG + V+QIITFGS+ AKA +RDVGR L   Y  VDR+ KLIP DP
Sbjct: 408  MDRRDEVIEHVSDMYGRDAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  E    D  V  L++++++LEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAFEAEPKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        VD+
Sbjct: 527  PLYCDDEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ LL    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPIDDKKSFDLLQRYETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G E I        H  + P+L+ T G+I+YQEQVMQIAQ L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGNEAISYPDEKWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRAGFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQT W+KTH+P EF+AA MT +MDN +KI     + ++  + ++PP VNT    F V 
Sbjct: 767  VSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVTLVDECQRMGLTVIPPDVNTGRYRFSVN 826

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  I Y + A+KGVG      I+ A   D PF  L DFC+RVD KKLN+RV+E L+ +G
Sbjct: 827  EDGHIVYGIGAVKGVGEGPIDAILSARDQDGPFRDLFDFCNRVDIKKLNKRVMEKLILSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948
            A+D  G  R  L+ +L+   + A+   K +     ++F        D K           
Sbjct: 887  AMDRLGPHRAALMATLEEAMRAAEQHAKAQAVGQVDMFGVLTEEIDDVKKAFANVPHWPD 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             V  E E+  LG Y +GHP++ Y   LR+       +   T R      A +V++ +   
Sbjct: 947  KVWLEGERETLGLYLTGHPINQYSSELRRYTSGRLCDLHPTSRDTVTTAAGLVIAARSMV 1006

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G+++G  T  + +   +   F
Sbjct: 1007 TKRGNKMGIFTLDDRSGRLDVTLF 1030


>gi|261253713|ref|ZP_05946286.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891]
 gi|260937104|gb|EEX93093.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891]
          Length = 1159

 Score = 1115 bits (2884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1046 (40%), Positives = 611/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A + G
Sbjct: 2    SDPKFIHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPAVALTDFTNLCGLVKFYGTAHSCG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG    +          Q       +  + +L +   GY+ L  L+S+ YL    +
Sbjct: 62   IKPIIGADFLM----------QSAEFGDELTRLTVLAADNTGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+ +EG+I+L+GG SG I +A    + + AE+ L  ++  F DR Y+ L
Sbjct: 112  HQPVIDKEWLTEL-SEGVIILSGGKSGEIGKALLKGNQKAAEECLAFYQTHFPDRFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        ++LA   ++P+VATN  + L E  ++AH++ +A+     +    R
Sbjct: 171  TRTGRADEETYLHFALELAEQSDIPVVATNEVVILEESLFDAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSPQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             EE   L  K+  GLE RL         +     +Y  RL  EL VI  M F GYFLIV 
Sbjct: 286  MEETEFLVKKSEEGLEDRLEFLFPDPAVRAERRPEYDDRLKIELEVINNMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L   +  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHGFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +    E    D  +  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFKAEPALPELYANDEEIKELIDMCRILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP  D  +++LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  AIESIPLVDQASFNLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E +        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAVSYPDEQWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTH+P EF+AA MT +MDN EK+     +  +  ++++PP +N     F 
Sbjct: 765  ALVSYQTLWLKTHFPAEFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLYRFN 824

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  +  I Y + AIKGVG      I+EA   D  F  L DFC+R+D KK+N+RV+E L++
Sbjct: 825  VDEEGAIVYGIGAIKGVGEGPIDAILEARNKDGHFKDLFDFCARIDLKKVNKRVIEKLIY 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  L+ SL++  K A    +       ++F    +     +    K    
Sbjct: 885  AGALDRLGPHRAALMASLNDAVKAASQHHQAEAFGQSDLFGVLTEAPEEVEHKYTKVEPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ + 
Sbjct: 945  PEKVWLEGERDTLGLYLTGHPINAYIRELGKYTSCRLKDATPTRRDQSVTVAGLVIASRV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|91223488|ref|ZP_01258753.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 12G01]
 gi|91191574|gb|EAS77838.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 12G01]
          Length = 1159

 Score = 1115 bits (2884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1046 (40%), Positives = 613/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL+VHS +S+++G   +  I+ K+A    PA+A+TD  NL   ++F   A  +G
Sbjct: 2    SDPKFIHLRVHSDFSMVDGLNKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG    +          Q       +  + LL +   GY+ L  L+S+ YL    +
Sbjct: 62   VKPIIGADFKM----------QSDEFGEELTQVTLLAADNVGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL E+ +EGLI+L+GG SG I R     + Q+ +  +  +K+ F DR Y+ L
Sbjct: 112  HHPVIDKAWLAEM-SEGLIVLSGGKSGEIGRGLLKGNRQLVQGCVDFYKQHFPDRFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA   +LP+VATN  +FLS + ++AH++ +A+     +    R
Sbjct: 171  LRTGRPDEETYLHFAVELAEQQDLPVVATNEVVFLSPDLFDAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             +E   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  MKETEFLVMKSREGLEERLEFLFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KLIP 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +    E   AD  V  L+++   LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLD-KAFKAEPALPELYEADEEVKELIDMCHILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP +D  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  QIESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +   L  T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAIFEEGAIKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFN 824

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  +  I Y + AIKGVG      I+EA      F  L DFC+RVD K++N+RV+E L++
Sbjct: 825  VDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARVDLKRVNKRVIEKLIY 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ SL++  K A    +       ++F          +    +    
Sbjct: 885  AGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ + 
Sbjct: 945  PEKVWLEGERDTLGLYLTGHPINAYVKELNKYTSCRLKDATPTRRDQSVTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|317046997|ref|YP_004114645.1| DNA polymerase III subunit alpha [Pantoea sp. At-9b]
 gi|316948614|gb|ADU68089.1| DNA polymerase III, alpha subunit [Pantoea sp. At-9b]
          Length = 1160

 Score = 1115 bits (2884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1045 (40%), Positives = 621/1045 (59%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G      ++ K AA   PAIAITD  NL   ++F   A  AG++
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLVKKAAALGMPAIAITDFTNLCGLVKFYGTAHGAGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   ++  +               +  + +L +   GYQ L  L+SR Y    G   
Sbjct: 64   PIIGADFNVVSE----------LMGDELTQLTVLAANNTGYQNLTLLISRAYQRGYGIAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+GG  G + R+    ++ +  + L  +++ F DR Y+ L R
Sbjct: 114  PVIDRDWLAEY-QEGLILLSGGRRGDVGRSLLRGNNALVAQCLAFYQQHFPDRYYLELTR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V+LA    +P+VATN   FL+EED++AH++ +A+     +    RP 
Sbjct: 173  TGRPDEEGYLHSAVELAIAEGVPVVATNEVCFLNEEDFDAHEIRVAIHDGYTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++ +EM  +FSD+PEALEN+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEAEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +    Q+Y +RL+ ELNVI +M F GYFLIV +F
Sbjct: 288  TEDFLVVKSREGLEERLEFLFPDPAVRAEKRQEYDERLEIELNVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDLVIDHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K      D+
Sbjct: 527  PLYCDENGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIEWQHESLQPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA K G++  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFQEGAEKMGVNGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYPFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D     Y + AIKGVG      I+EA   D  F  L D C+R D+KK+NRRV+E L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAILEARNRDGYFKELFDLCARTDTKKINRRVMEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL++  K A    K       ++F    +     + +    +    
Sbjct: 887  AFDRLGPHRAALMSSLNDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYASVTPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             ++ + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +  
Sbjct: 947  QIQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKVTVAAGLVIAARTM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|261338818|ref|ZP_05966676.1| hypothetical protein ENTCAN_05013 [Enterobacter cancerogenus ATCC
            35316]
 gi|288318641|gb|EFC57579.1| DNA polymerase III, alpha subunit [Enterobacter cancerogenus ATCC
            35316]
          Length = 1160

 Score = 1115 bits (2884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1045 (40%), Positives = 611/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F   A   G++
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTAHGVGMK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G    +          Q +     +  I +L     GYQ L  L+S+ Y    G Q 
Sbjct: 64   PIVGADFHV----------QSELLGDEMTQISVLAMNNTGYQNLTLLISKAYQRGYGAQG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGL++++GG  G + +     +S + ++ +  +++ F DR Y+ L R
Sbjct: 114  PWIDRDWLAEL-NEGLLLISGGRMGDVGKCLLRGNSALVDQCVSFYEEHFPDRYYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  FL   D++AH++ +A+     +    RP 
Sbjct: 173  TGRADEENYLHAAVALAEQRGLPVVATNDVRFLESGDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   Y++   EM  +FSD+PEALEN+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSSQQYMRTEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +      Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVVKSKEGLEERLEFLFPDEAERKEKRPPYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K      D+
Sbjct: 527  PLYCDEAGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                I Y + AIKGVG      I+EA  +   F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  EHGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F    +     + +         
Sbjct: 887  AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYSNCQPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPINQYIKEIERYVGGNRLKDMHPTDRGKITTAAGLVIAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|237729490|ref|ZP_04559971.1| DNA polymerase III subunit alpha [Citrobacter sp. 30_2]
 gi|226909219|gb|EEH95137.1| DNA polymerase III subunit alpha [Citrobacter sp. 30_2]
          Length = 1160

 Score = 1115 bits (2883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1047 (40%), Positives = 615/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G    +          + +     +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFHV----------RSELLGDELTQLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            +   I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F +  ++ L
Sbjct: 112  EGPVIDRDWLVEL-KEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPNCYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V LA T  LP+VATN+  FL   D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEENYLHAAVALAETRGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  Y+++  EM  +FSD+PEAL+NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231  PRNYSPQQYMRSEDEMCELFSDIPEALQNTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +      Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -TTEDFLVAKSREGLEERLEFLFPDPEVRAQKRPPYDERLEVELKVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D +   PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +
Sbjct: 525  FAPLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA K G+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRGTFEEGAKKRGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D+    Y + AIKGVG      I+EA  +   F  L D C+R D KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDIKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL++  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLNDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|258405519|ref|YP_003198261.1| DNA polymerase III, alpha subunit [Desulfohalobium retbaense DSM
            5692]
 gi|257797746|gb|ACV68683.1| DNA polymerase III, alpha subunit [Desulfohalobium retbaense DSM
            5692]
          Length = 1159

 Score = 1115 bits (2883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1038 (39%), Positives = 606/1038 (58%), Gaps = 26/1038 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL  H+ YSLL+GA+ + ++  +       ++AI+D  NLF AL+F   A   G++P
Sbjct: 3    DFTHLHCHTEYSLLDGAIRIGDLCQQAVDFGFSSVAISDHGNLFGALDFYLTAKKFGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +   D    T        +   +VLL     GY  L+ LVSR +L        
Sbjct: 63   IIGCEVYVAPGDR--RTKHTDKDIRSGYHLVLLAQNLTGYYNLVRLVSRGWLEG-FHYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L +   EGLI L+    G +            +     +  LF  R Y+ LQ +
Sbjct: 120  RVDKELLSQW-NEGLIALSACLKGEVPYGLRHEGMSRGKALAEEYSALFPGRFYLELQAN 178

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     Q+++LA T +LPLVATN+  +LS  D EAHD+L+ +  +     KDR R 
Sbjct: 179  GIPEQVTLNEQLLELAETTKLPLVATNDCHYLSYNDVEAHDILLCIQTNAQYYAKDRMRF 238

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + Y +   EM   F+  P+ALEN   IAR C+  L +     P +   +     +  
Sbjct: 239  DTQELYYRPPEEMEQAFAHCPQALENVGAIARNCNVELDLGQNYFPVYDVPQG----RTL 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E E       GL  RLA+  +      + Y QRLD EL+VI    F  YFLIV DFI WA
Sbjct: 295  EEEFIRLVREGLRTRLAK--LPYTVDEEVYWQRLDTELDVICAKGFPAYFLIVQDFINWA 352

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+  IPVGPGRGS AGS+ AY L IT++DPLR++LLFERFLN +R SMPD D+DFC +RR
Sbjct: 353  KEQGIPVGPGRGSAAGSLVAYCLGITNLDPLRYNLLFERFLNVERASMPDIDVDFCYNRR 412

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVIRYV  KYG E VAQI TFG+++AKA +RDVGRAL + +++ D++ KL+P+D    +
Sbjct: 413  EEVIRYVTAKYGKESVAQITTFGTMKAKAVVRDVGRALGLSFAETDKIAKLVPDDLKMTI 472

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD-RPLSQLVPMY 546
              +A+  +         D +V +L+++S++LEGL RHASTHAAGIVI D  PL   +P+Y
Sbjct: 473  D-KALEQEPDLAALAENDETVAKLIDVSRRLEGLARHASTHAAGIVISDSHPLEDHLPLY 531

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDD 605
               + ++ VTQF+MK +EK GLIKFDFLGLKTLT++  +L    Q G    D+  +P +D
Sbjct: 532  LGKKGEV-VTQFDMKKVEKVGLIKFDFLGLKTLTVIADTLHLAQQAGKSVPDIDTLPLED 590

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
              T+ LL    T G+FQLESSGMR  ++ +QP   EDIIAL++LYRPGP+++ +V  +  
Sbjct: 591  EATFALLCRTETDGVFQLESSGMRNVIKDLQPTSFEDIIALLALYRPGPLESGMVTDFIR 650

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+  +   HPL++P+L+ T GVI+YQEQVM+IA  ++ YSL + D+LRRAMGKK   
Sbjct: 651  RKHGEIPVEYPHPLLEPILEATYGVILYQEQVMRIASDMANYSLGDGDILRRAMGKKDPS 710

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M +Q+ +F++GA +N I +  A  IF+L+ KFA YGFNKSH+AAYA++SYQTA++K HY
Sbjct: 711  VMAEQRTKFVNGAKENEIDEATATYIFDLMEKFAGYGFNKSHSAAYALVSYQTAYLKAHY 770

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+AA +T E+ N +K+       R+  I+++PP VN     F V + ++ + L+ +K
Sbjct: 771  PVEFMAALITSEVSNTDKVIAHINACREMGIEVLPPDVNHSERHFTVENEKLRFGLSGVK 830

Query: 844  GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      ++ E   + P+ SL DFC RV S+K+ +RVLESL+ +GA+D  G SR  LL
Sbjct: 831  NVGGGAIEALVAERRRNGPYASLLDFCKRVGSRKVTKRVLESLIKSGAMDSLGCSRASLL 890

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-------DKITLEKFSVENSSVRFENE 955
             +LD +   AQ   ++++    ++ A      S         I   +    +   R + E
Sbjct: 891  AALDKVVSTAQRQSRDKSRGQLSLMAMMGEEDSCVLSGIGMDIEEAQVEEWDDEKRLQYE 950

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LGF+ SGHPL  ++  L++  +   ++         +R A +V   ++  T+KG R+
Sbjct: 951  KEALGFFLSGHPLLRFREELKRQRLLSLQDCGELGGDTEVRTAVLVTGVKEHVTKKGGRM 1010

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +    +     E   FP
Sbjct: 1011 AFCQIEDLTGTGEMTMFP 1028


>gi|229837766|ref|ZP_04457926.1| DNA polymerase III, alpha chain [Yersinia pestis Pestoides A]
 gi|229840988|ref|ZP_04461147.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis
            str. PEXU2]
 gi|229843089|ref|ZP_04463239.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis
            str. India 195]
 gi|229903544|ref|ZP_04518657.1| DNA polymerase III, alpha chain [Yersinia pestis Nepal516]
 gi|229679314|gb|EEO75417.1| DNA polymerase III, alpha chain [Yersinia pestis Nepal516]
 gi|229689965|gb|EEO82024.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis
            str. India 195]
 gi|229697354|gb|EEO87401.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis
            str. PEXU2]
 gi|229704143|gb|EEO91155.1| DNA polymerase III, alpha chain [Yersinia pestis Pestoides A]
 gi|320014193|gb|ADV97764.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Medievalis
            str. Harbin 35]
          Length = 1160

 Score = 1115 bits (2883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1045 (40%), Positives = 607/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 64   PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   EGLI+L+GG  G + +     +    ++ L  +++ F D  Y+ L R
Sbjct: 114  PIIDRDWLIK-HKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP 
Sbjct: 173  TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E       
Sbjct: 233  NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  KA  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 527  PLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  ASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA  +   F  L D C+RVD+KKLN+R+LE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F          + +         
Sbjct: 887  AFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V++ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|269966266|ref|ZP_06180355.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 40B]
 gi|269829181|gb|EEZ83426.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 40B]
          Length = 1159

 Score = 1114 bits (2882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1046 (40%), Positives = 613/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL+VHS +S+++G   +  I+ K+A    PA+A+TD  NL   ++F   A  +G
Sbjct: 2    SDPKFIHLRVHSDFSMVDGLNKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG    +          Q       +  + LL +   GY+ L  L+S+ YL    +
Sbjct: 62   VKPIIGADFKM----------QSDEFGEELTQVTLLAADNVGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL E+ +EGLI+L+GG SG I R     + Q+ +  +  +K+ F DR Y+ L
Sbjct: 112  HHPVIDKAWLAEM-SEGLIVLSGGKSGEIGRGLLKGNRQIVQGCVDFYKQHFPDRFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA   +LP+VATN  +FLS + ++AH++ +A+     +    R
Sbjct: 171  LRTGRPDEETYLHFAVELAEQQDLPVVATNEVVFLSPDLFDAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             +E   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  MKETEFLVMKSREGLEERLEFLFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KLIP 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +    E   AD  V  L+++   LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLD-KAFKAEPALPELYEADEEVKELIDMCHILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP +D  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  QIESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +   L  T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAIFEEGAIKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFN 824

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  +  I Y + AIKGVG      I+EA      F  L DFC+RVD K++N+RV+E L++
Sbjct: 825  VDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARVDLKRVNKRVIEKLIY 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ SL++  K A    +       ++F          +    +    
Sbjct: 885  AGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ + 
Sbjct: 945  PEKVWLEGERDTLGLYLTGHPINAYVKELNKYTSCRLKDATPTRRDQSVTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|22126996|ref|NP_670419.1| DNA polymerase III subunit alpha [Yersinia pestis KIM 10]
 gi|45442559|ref|NP_994098.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Microtus
            str. 91001]
 gi|108806532|ref|YP_650448.1| DNA polymerase III subunit alpha [Yersinia pestis Antiqua]
 gi|108813101|ref|YP_648868.1| DNA polymerase III subunit alpha [Yersinia pestis Nepal516]
 gi|149366940|ref|ZP_01888973.1| DNA polymerase III, alpha chain [Yersinia pestis CA88-4125]
 gi|162420959|ref|YP_001607757.1| DNA polymerase III subunit alpha [Yersinia pestis Angola]
 gi|165927052|ref|ZP_02222884.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. F1991016]
 gi|165939826|ref|ZP_02228366.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. IP275]
 gi|166011915|ref|ZP_02232813.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. E1979001]
 gi|166211235|ref|ZP_02237270.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. B42003004]
 gi|167400078|ref|ZP_02305596.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. UG05-0454]
 gi|167419915|ref|ZP_02311668.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. MG05-1020]
 gi|167425342|ref|ZP_02317095.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Mediaevalis
            str. K1973002]
 gi|218928227|ref|YP_002346102.1| DNA polymerase III subunit alpha [Yersinia pestis CO92]
 gi|270487325|ref|ZP_06204399.1| DNA polymerase III subunit alpha [Yersinia pestis KIM D27]
 gi|294503076|ref|YP_003567138.1| DNA polymerase III subunit alpha [Yersinia pestis Z176003]
 gi|21960041|gb|AAM86670.1|AE013912_14 DNA polymerase III, alpha subunit [Yersinia pestis KIM 10]
 gi|45437424|gb|AAS62975.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Microtus str.
            91001]
 gi|108776749|gb|ABG19268.1| DNA polymerase III, alpha subunit [Yersinia pestis Nepal516]
 gi|108778445|gb|ABG12503.1| DNA polymerase III, alpha subunit [Yersinia pestis Antiqua]
 gi|115346838|emb|CAL19724.1| DNA polymerase III, alpha chain [Yersinia pestis CO92]
 gi|149290554|gb|EDM40630.1| DNA polymerase III, alpha chain [Yersinia pestis CA88-4125]
 gi|162353774|gb|ABX87722.1| DNA polymerase III, alpha subunit [Yersinia pestis Angola]
 gi|165912229|gb|EDR30866.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. IP275]
 gi|165920948|gb|EDR38172.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. F1991016]
 gi|165989181|gb|EDR41482.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. E1979001]
 gi|166207006|gb|EDR51486.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. B42003004]
 gi|166962656|gb|EDR58677.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. MG05-1020]
 gi|167050786|gb|EDR62194.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. UG05-0454]
 gi|167055742|gb|EDR65526.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Mediaevalis
            str. K1973002]
 gi|262361114|gb|ACY57835.1| DNA polymerase III subunit alpha [Yersinia pestis D106004]
 gi|262365354|gb|ACY61911.1| DNA polymerase III subunit alpha [Yersinia pestis D182038]
 gi|270335829|gb|EFA46606.1| DNA polymerase III subunit alpha [Yersinia pestis KIM D27]
 gi|294353535|gb|ADE63876.1| DNA polymerase III subunit alpha [Yersinia pestis Z176003]
          Length = 1171

 Score = 1114 bits (2882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1045 (40%), Positives = 607/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 74

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 75   PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   EGLI+L+GG  G + +     +    ++ L  +++ F D  Y+ L R
Sbjct: 125  PIIDRDWLIK-HKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYLELIR 183

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP 
Sbjct: 184  TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 243

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E       
Sbjct: 244  NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEM-----S 298

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  KA  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 299  TEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVMEF 358

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 359  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFC 418

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 419  MEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDP 478

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 479  GMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 537

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 538  PLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDI 597

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 598  ASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 657

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD
Sbjct: 658  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 717

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 718  MLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 777

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 778  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 837

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA  +   F  L D C+RVD+KKLN+R+LE L+ +G
Sbjct: 838  DDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSG 897

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F          + +         
Sbjct: 898  AFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQE 957

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V++ +  
Sbjct: 958  QVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVM 1017

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1018 VTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|254228403|ref|ZP_04921829.1| DNA polymerase III, alpha subunit subfamily, putative [Vibrio sp.
            Ex25]
 gi|262393535|ref|YP_003285389.1| DNA polymerase III subunit alpha [Vibrio sp. Ex25]
 gi|151938991|gb|EDN57823.1| DNA polymerase III, alpha subunit subfamily, putative [Vibrio sp.
            Ex25]
 gi|262337129|gb|ACY50924.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25]
          Length = 1159

 Score = 1114 bits (2882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1046 (40%), Positives = 613/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL+VHS +S+++G   +  I+ K+A    PA+A+TD  NL   ++F   A  +G
Sbjct: 2    SDPKFIHLRVHSDFSMVDGLNKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG    +          Q       +  + LL +   GY+ L  L+S+ YL    +
Sbjct: 62   VKPIIGADFKM----------QSDEFGEELTQVTLLAADNVGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL E+ +EGLI+L+GG SG I R     + Q+ +  +  +K+ F DR Y+ L
Sbjct: 112  HHPVIDKAWLAEM-SEGLIVLSGGKSGEIGRGLLKGNRQIVQGCVDFYKQHFPDRFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA   +LP+VATN  +FLS + ++AH++ +A+     +    R
Sbjct: 171  LRTGRPDEETYLHFAVELAEQQDLPVVATNEVVFLSPDLFDAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             +E   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  MKETEFLVMKSREGLEERLEFLFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KLIP 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +    E   AD  V  L+++   LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLD-KAFKAEPALPELYEADEEVKELIDMCHILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP +D  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  QIESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +   L  T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAIFEEGAIKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  + ++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFN 824

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  +  I Y + AIKGVG      I+EA      F  L DFC+RVD K++N+RV+E L++
Sbjct: 825  VDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARVDLKRVNKRVIEKLIY 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ SL++  K A    +       ++F          +    +    
Sbjct: 885  AGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ + 
Sbjct: 945  PEKVWLEGERDTLGLYLTGHPINAYVKELNKYTSCRLKDATPTRRDQSVTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|117618855|ref|YP_855729.1| DNA polymerase III, alpha subunit [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
 gi|117560262|gb|ABK37210.1| DNA polymerase III, alpha subunit [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
          Length = 1159

 Score = 1114 bits (2882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1044 (41%), Positives = 612/1044 (58%), Gaps = 37/1044 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +N I+   AA+  PA+A+TD  N+   + F   A   G++
Sbjct: 4    PRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHGKGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G    +          Q          + LL    +GYQ +  L+SR Y     +  
Sbjct: 64   PIVGADFWV----------QSDELGDEQFRLTLLAMDNDGYQNITLLISRGYQRGHVQGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E   +G+I+L+GG  G + +     + Q+ E+ L  ++  F D  Y+ L R
Sbjct: 114  PVIDKAWLAE-HAKGVIVLSGGREGDVGKFLLKGNRQMTEQCLAFYQTHFPDAYYLELLR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D        V +A    LP+VATN  +FL+ +D++AH++ +A+     +  K RPR
Sbjct: 173  TGRPDEEVYLHMAVAIATEFALPVVATNEVVFLTADDFDAHEIRVAIHDGYTLMDKRRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL+++ EM  +F+D+PEALENTVEIA+RC+  +++    LP F   +       
Sbjct: 233  RYSPQQYLRSQEEMAELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVMKSKEGLEERLEFLFPDPAVRAERRPEYDERLDIELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRRDEVI +V   YG E V+QIITFGS+ AKA +RDVGR L   Y  VDR+ KLIP DP
Sbjct: 408  MDRRDEVIDHVSEMYGREAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  E    D  V  L++++++LEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAFEAEPKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        VD+
Sbjct: 527  PLYCDDEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPIDDKRSFDLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   +  RK+GKE I        H  + P+L+ T G+I+YQEQVMQIAQ L+GY+L  AD
Sbjct: 647  MVDNFIERKHGKEAISYPDEKWQHESLQPILEPTYGIILYQEQVMQIAQTLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRAGFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQT W+KTH+P EF+AA MT +MDN +KI     + ++  + ++PP VNT    F V 
Sbjct: 767  VSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVTLVDECQRMGLTVIPPDVNTGRYRFSVN 826

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  I Y + A+KGVG      I+EA   D PF  L DFC+RVD KKLN+RV+E L+ +G
Sbjct: 827  EDGHIVYGIGAVKGVGEGPIDAILEARDRDGPFRDLFDFCNRVDIKKLNKRVMEKLILSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948
            A+D  G  R  L+ +L+   + A+   K +     ++F        D K           
Sbjct: 887  AMDRLGPHRAALMATLEEAMRAAEQHAKAQAVGQVDMFGVLTEEIDDVKKAFANVPHWPD 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             V  E E+  LG Y +GHP++ Y   LR+       +   T R      A +V++ +   
Sbjct: 947  KVWLEGERETLGLYLTGHPINQYSGELRRYTSGRLCDLHPTSRDTVTTAAGLVIAARSMV 1006

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G+++G  T  + +   +   F
Sbjct: 1007 TKRGNKMGIFTLDDRSGRLDVTLF 1030


>gi|146310386|ref|YP_001175460.1| DNA polymerase III subunit alpha [Enterobacter sp. 638]
 gi|145317262|gb|ABP59409.1| DNA polymerase III, alpha subunit [Enterobacter sp. 638]
          Length = 1160

 Score = 1114 bits (2881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1045 (40%), Positives = 609/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F   A  AG++
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAAHGAGLK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  I +L     GYQ L  L+SR Y    G   
Sbjct: 64   PIIGADFHV----------QSELLGDEMTQISVLAMNNTGYQNLTLLISRAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGL++++GG  G + ++    ++ + E+ +  +++ F DR Y+ L R
Sbjct: 114  PWIDRDWLAEL-NEGLLLISGGRMGDVGKSLIRGNNVLVEQCVAFYEEHFPDRFYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  F++ ED++AH++ +A+     +    RP 
Sbjct: 173  TGRPDEENYLHAAVALAEQRGLPVVATNDVRFINAEDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   Y+++  EM  +F+D+PEALEN+VEIARRC+  +++    LP+F   E       
Sbjct: 233  NYSTQQYMRSEDEMCELFADIPEALENSVEIARRCNVTVRLGEYFLPQFPTGEM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +      Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVLKSKEGLEDRLEFLFPDEAERNEKRPPYDERLDIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        +D+
Sbjct: 527  PLYCDESGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRRAKQGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDVQWQHDCLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRGTFEDGAKKNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N     F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINAGMYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA  +   F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAILEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948
            A D  G  R  L+ SL    K A    K       ++F          + +         
Sbjct: 887  AFDRLGPHRAALMNSLGEALKAADQHAKAEAIGQADMFGVLADEPEQIEQSYANCQPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                E E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +  
Sbjct: 947  HTVLEGERETLGLYLTGHPINQYLKEIERYVGGNRLKDMHPTERGKMTTAAGLVIAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|240850744|ref|YP_002972144.1| DNA polymerase III subunit alpha [Bartonella grahamii as4aup]
 gi|240267867|gb|ACS51455.1| DNA polymerase III subunit alpha [Bartonella grahamii as4aup]
          Length = 1164

 Score = 1114 bits (2881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 589/1038 (56%), Positives = 754/1038 (72%), Gaps = 8/1038 (0%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            + +     P F+HL+VHS+YSLLEGAL +  I+ +  +D  PA+AITDTNNLF ALEFSQ
Sbjct: 10   MQENKNSLPRFIHLRVHSAYSLLEGALKIPQIIQQAISDHAPAVAITDTNNLFGALEFSQ 69

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFP-TVPSIVLLVSTAEGYQRLIELVSRM 119
               A G+QPIIGCQL +D  D    +   K   P    SIVLL ++  GY  L+ LVSR 
Sbjct: 70   HCLAHGVQPIIGCQLTVDFCDENDHSRLAKWRNPSDFCSIVLLAASEIGYAHLVRLVSRA 129

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            YL  +      I  +WL    +EG+I+LTGG  GPI+ +      + A +RL+  KK F 
Sbjct: 130  YLDKRDTDPPHIKANWLS-AHSEGIIVLTGGKGGPINLSLAEEKKEHAVERLIYLKKSFA 188

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            DRLYV LQRH  YDR  E+ +++LAY HE+PLVATN + FL  E YEAHD LMAV+   +
Sbjct: 189  DRLYVELQRHGSYDRRVEADLIELAYAHEIPLVATNEAFFLKREGYEAHDALMAVSEGQI 248

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            VS  DR RVTPDHYLK++ EMV++FSDLPEALEN+VEIA RC     +  PILPRFIE+ 
Sbjct: 249  VSNPDRKRVTPDHYLKSQDEMVTLFSDLPEALENSVEIALRCHIATPLRKPILPRFIEQS 308

Query: 300  C--DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               ++  + E++EL N+A AGL++RL    +A+GY   DY QRLD+E++VI RM+FSGYF
Sbjct: 309  ANSENTLEVEDSELLNQAKAGLKMRLETIGLAEGYTIADYEQRLDYEISVITRMQFSGYF 368

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV+DFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPD
Sbjct: 369  LIVSDFIKWAKVHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPD 428

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ+RR+EVI+YVQ KYG  +VAQIITFG LQA+A LRDVGR L++PY QVD L K
Sbjct: 429  FDIDFCQERREEVIQYVQKKYGRNQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTK 488

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   V L  AI D+ +F E +  DP V R L+I+ +LEGLYRHASTHAAGIVIGD
Sbjct: 489  LIPATPGSQVELADAIKDEPKFEEEKKKDPVVGRALDIALQLEGLYRHASTHAAGIVIGD 548

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL +LVPMYRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++G+K+
Sbjct: 549  RPLWELVPMYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARKGIKI 608

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DLS IP +D  TY ++    T+G+FQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++
Sbjct: 609  DLSNIPLNDETTYAMMARGETVGVFQVESSGMRKALIGMKPDRIEDIIALVALYRPGPME 668

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            NI  YN RK+G+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRA
Sbjct: 669  NIPTYNARKHGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRA 728

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKKI  EM KQ+ RF++GA   G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQT
Sbjct: 729  MGKKIHAEMQKQRTRFVNGAVAGGVDKDQADIIFDLLAKFADYGFNKSHAAAYAIVSYQT 788

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A+MK +YPVEFLAASMT +M N +K+  F ++A +  I+++ PS+ T    F+VGDN IY
Sbjct: 789  AYMKANYPVEFLAASMTYDMTNTDKLNDFRREALRLGIEVIAPSIQTSHRVFEVGDNCIY 848

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            YSLAAIKGVG T   HI+    DK F  LEDFC+RVD + +N+R +ESLV AGA DCF  
Sbjct: 849  YSLAAIKGVGETVVDHIVACRGDKIFKDLEDFCARVDPRIVNKRAMESLVCAGAFDCFNI 908

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LL +L  +   A  +  + ++   +IF    G     I L + +    + +   E 
Sbjct: 909  AREVLLANLGTLHARALRILDDNSSGQVDIFGMAGGLKEPLI-LSQTTSWLPAEKLYREF 967

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSR 1014
            + +GFYFS HPL+ Y+ IL K  I+ +      ++G     RLA  VV+K  +KT+ G +
Sbjct: 968  QAIGFYFSAHPLEEYQAILDKKRIQTWVNFANAVKGGATAARLAGTVVAKNVRKTKSGKK 1027

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            +G + FS+ + +YEA  F
Sbjct: 1028 MGIIHFSDTSGQYEAVLF 1045


>gi|153947435|ref|YP_001400012.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis IP
            31758]
 gi|152958930|gb|ABS46391.1| DNA polymerase III, alpha subunit [Yersinia pseudotuberculosis IP
            31758]
          Length = 1160

 Score = 1114 bits (2881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1045 (40%), Positives = 607/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 64   PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   EGLI+L+GG  G + +     +    ++ L  +++ F D  Y+ L R
Sbjct: 114  PIIDRDWLIK-HKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP 
Sbjct: 173  TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E       
Sbjct: 233  NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  KA  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 527  PLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  ASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA  +   F  L D C+RVD+KKLN+R+LE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F          + +         
Sbjct: 887  AFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V++ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|253699799|ref|YP_003020988.1| DNA polymerase III subunit alpha [Geobacter sp. M21]
 gi|251774649|gb|ACT17230.1| DNA polymerase III, alpha subunit [Geobacter sp. M21]
          Length = 1155

 Score = 1114 bits (2881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1037 (39%), Positives = 619/1037 (59%), Gaps = 19/1037 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S +FVHL +HS YSLL+GA+ + ++L K+     PA+A+TD  N+F  LEF  K    GI
Sbjct: 3    SANFVHLHLHSQYSLLDGAIRIGDLLKKVKECHMPAVAMTDHGNMFGTLEFYLKCKDKGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG ++ I  Q  L               ++LL     G++ L  LVS  Y  +   +
Sbjct: 63   KPIIGSEVYIAPQSRLLKQAPA-AGEANSYHLILLCENMTGFKNLSYLVSAGY-KEGFYR 120

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              RI    L +   EGLI+L+    G +      N    A      + + F    Y+ LQ
Sbjct: 121  RPRIDKELLLK-HKEGLIVLSACLQGEVAYLAGRNKMDEARAAASWYAENFPGSYYIELQ 179

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             ++  ++     +++++A   +LPLVATN+  +L+ ED  AH++L+ +     +S  +R 
Sbjct: 180  ENKLPEQDVANRRLMEIAREMDLPLVATNDCHYLNREDARAHEILLCIQTGKTMSDPNRM 239

Query: 247  RVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + D +  K   EM + F   PEAL NTV+IA RC      +    P +   E + +  
Sbjct: 240  AFSVDEFYVKTPEEMAAAFHYAPEALSNTVKIAERCHLEFDFNTYYFPAYEAPEGETL-- 297

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVAD 362
              + +L  ++ AGL  RL +  I      +    Y  RL  EL+ I +M F GYFLIVAD
Sbjct: 298  --DQQLERESKAGLIERLKKIRIKYNLTEEQEQGYHARLRIELDCIKQMGFPGYFLIVAD 355

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK + IPVGPGRGS AGS+ A+ + ITDIDP+ ++LLFERFLNP+R+SMPD D+DF
Sbjct: 356  FINWAKDHGIPVGPGRGSAAGSLVAFCIRITDIDPMPYNLLFERFLNPERISMPDIDVDF 415

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVI+Y+  KYG E+V QIITFG++ A+  +RDVGRAL + + +VDR+ KL+P  
Sbjct: 416  CQDRREEVIQYMVEKYGREKVCQIITFGTMAARGVIRDVGRALDLTFGEVDRIAKLVPEV 475

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+  + + +E   ADP V  ++ ++ +LEGL RHASTHAAG+V+  R + + 
Sbjct: 476  LGITLE-KALEQEPKLKELMAADPKVKEVMTVALRLEGLARHASTHAAGLVVAPRQMEEF 534

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
             P+Y+D ++    TQ++MK++EK GL+KFDFLGLK LT++  +   +   +    D++L+
Sbjct: 535  CPVYKDQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIDNACKHIRNGKDPNFDITLL 594

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
              DD E+Y LL    T G+FQLESSGM++ L  ++P C EDIIA+ +LYRPGP+ + +V 
Sbjct: 595  RDDDAESYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLGSGMVD 654

Query: 661  -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RK+G+++ V   P ++P+LK+T GVI+YQEQVMQI++ L+GYSL  AD+LRRAMGK
Sbjct: 655  DFIERKHGRKQTVYDLPQLEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGADLLRRAMGK 714

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  E+M K++++F+ G+ K G+       IF+L+AKFA+YGFNKSH+AAYA+++YQTA++
Sbjct: 715  KDAEQMAKERDKFLEGSEKLGLDGKKCAAIFDLMAKFAEYGFNKSHSAAYALVAYQTAFL 774

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYPVEF+AA +T +M N +K+ K   D R+  I+++PP +N     F+V D  + + L
Sbjct: 775  KAHYPVEFMAALLTEDMGNTDKVIKSIGDCREMGIEVLPPDINESDRSFRVLDKAMRFGL 834

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             A+K VG      I+EA  D+PF  L DFC RVD +++N+RV+E+L+  GA DC G  R 
Sbjct: 835  GAVKNVGEGAIEAIIEARGDEPFKDLFDFCERVDLRRVNKRVIEALIKCGAFDCTGAKRS 894

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFENEQ 956
            QL+  L++     Q V++ R +   ++F   +   G       L      +   R   E+
Sbjct: 895  QLMAGLEDAAATGQRVQQERESAQASLFGAAEIVRGGNGGGNRLPDIPEWDEKYRLGCEK 954

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              +GF+ +GHPLD Y   +R+         +       +R+  +  + ++  T+KG R+ 
Sbjct: 955  EAIGFFITGHPLDRYVADMRRFSTVDCSTILDAKEKGEVRICGVPSTVKELITKKGDRMA 1014

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++   +     E   FP
Sbjct: 1015 FLALEDLVGSVEVVVFP 1031


>gi|197286116|ref|YP_002151988.1| DNA polymerase III subunit alpha [Proteus mirabilis HI4320]
 gi|194683603|emb|CAR44494.1| DNA polymerase III, alpha chain [Proteus mirabilis HI4320]
          Length = 1160

 Score = 1114 bits (2881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1045 (40%), Positives = 612/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G      ++ K+A+   PA AITD  NL   ++F   A  AGI+
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTGPLVKKVASLGMPAFAITDFTNLCGLVKFYGAAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G  + ++ +                  + +L     GYQ L  L+S  Y    G   
Sbjct: 64   PIVGADVYLETE----------LLGDEYAHLTILARDNVGYQNLTLLISEAYKHGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL     EGL++L+GG  G + +     +  + E+ L  ++  F D  Y+ L R
Sbjct: 114  PVIKQEWLTTY-KEGLLLLSGGRMGDVGKFLLRGNRALVEQCLEYYQTHFPDSYYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D      + V LA    LP+VATN+  FL  +D++AH++ +A+     +S   RP 
Sbjct: 173  TGRPDEESYLHEAVALASEKGLPVVATNDVRFLDSDDFDAHEIRVAIHDGFTLSDPKRPK 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y++   EM  +F+D+PEALEN+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  HYSPQQYMRTEEEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLIKKSKEGLEERLAFLFPDPQEREKRRPEYDERLEIELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDRVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKSLIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        VD+
Sbjct: 527  PLYCDPEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKSLEPVDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S I   D  ++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  SAISLTDQRSFDMLQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G E+I        H  + P+L+ T GVI+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGVEEISYPDVKWQHESLQPVLEPTYGVILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F +GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEAGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D     Y + AIKGVG      I+EA      F  + D C+R ++KKLNRRV+E L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIVEARQQGGHFKDIFDLCARTETKKLNRRVMEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL++  K A    K       ++F    +     + +         
Sbjct: 887  AFDKLGPHRAALMSSLEDALKAADQHAKAEAIGQSDMFGVLAEAPEQVERSYANVPKWPD 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  E E+  LG Y +GHP+  Y   + +       ++ V T RG  +++A +V++ +  
Sbjct: 947  QVVLEGERETLGLYLTGHPITRYLKEIERYAAGTRLKDLVPTPRGQMVKVAGLVLASKVF 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 TTKRGNRIGICTLDDRSGRLEIMLF 1031


>gi|51597303|ref|YP_071494.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis IP
            32953]
 gi|186896408|ref|YP_001873520.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis PB1/+]
 gi|51590585|emb|CAH22226.1| DNA polymerase III, alpha chain [Yersinia pseudotuberculosis IP
            32953]
 gi|186699434|gb|ACC90063.1| DNA polymerase III, alpha subunit [Yersinia pseudotuberculosis PB1/+]
          Length = 1171

 Score = 1114 bits (2881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1045 (40%), Positives = 607/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 74

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 75   PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   EGLI+L+GG  G + +     +    ++ L  +++ F D  Y+ L R
Sbjct: 125  PIIDRDWLIK-HKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYLELIR 183

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP 
Sbjct: 184  TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 243

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E       
Sbjct: 244  NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEM-----S 298

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  KA  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 299  TEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVMEF 358

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 359  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFC 418

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 419  MEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDP 478

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 479  GMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 537

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 538  PLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDI 597

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 598  ASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 657

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD
Sbjct: 658  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 717

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 718  MLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 777

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 778  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 837

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA  +   F  L D C+RVD+KKLN+R+LE L+ +G
Sbjct: 838  DDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSG 897

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F          + +         
Sbjct: 898  AFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQE 957

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V++ +  
Sbjct: 958  QVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVM 1017

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1018 VTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|325295328|ref|YP_004281842.1| DNA polymerase III, alpha subunit [Desulfurobacterium
            thermolithotrophum DSM 11699]
 gi|325065776|gb|ADY73783.1| DNA polymerase III, alpha subunit [Desulfurobacterium
            thermolithotrophum DSM 11699]
          Length = 1147

 Score = 1114 bits (2881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1035 (39%), Positives = 616/1035 (59%), Gaps = 19/1035 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL +HS YSLL+GA+ + +++ K       A+A+TD  N++++ E  ++  A
Sbjct: 1    MANKGDFVHLHLHSQYSLLDGAIKIKDLVKKAKEYGMSAVAVTDHGNMYASYELYKECTA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I          +G         +VLL     G + L++L S  +L   
Sbjct: 61   EGIKPIIGQEFYIAKGSRFDR-KKGNEGEKGSYHLVLLAKNEIGLKNLMKLSSIAFLEG- 118

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI L+    G I   +     + A+     +K+LFGD  Y+
Sbjct: 119  FYYKPRIDKEVLEKY-SEGLIALSACIQGEIPVLYLQGKEEEAKNVAKWYKELFGDDFYL 177

Query: 185  NLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +Q H   ++ + +Q +++L+   ++ LVATN++ +L +ED+EAHDVL+ +     +S +
Sbjct: 178  EIQYHGIKEQEKANQFLIKLSKELDIDLVATNDAHYLEKEDWEAHDVLLCLQTGKKLSDE 237

Query: 244  DRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +R R +  + Y K+ +EM+ +F ++P A+ NT+++A +    ++    +LP++       
Sbjct: 238  NRLRFSTKEFYFKDANEMLELFKEVPHAVFNTLKVAEKIDVKIKNTGYLLPKYDVPP--- 294

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 E+ LR  A  GLE R  +  I  G   Q Y QRL  EL +I+ M F GYFLIV D
Sbjct: 295  -DYTYESYLRELAEKGLERRFKELGITNGEIKQKYYQRLQHELKIISDMGFPGYFLIVWD 353

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAKKN IPVGPGRGS AGS+ AYA+ ITDIDPLRF+LLFERFLNP+R++MPD D+D 
Sbjct: 354  FINWAKKNGIPVGPGRGSAAGSLVAYAIGITDIDPLRFNLLFERFLNPERVTMPDIDVDI 413

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ+ RD VI+YV++KYG ++V QIITFG+++ K  +RDVGR L +P  +VD+  KLIPND
Sbjct: 414  CQEGRDRVIQYVRDKYGEDKVCQIITFGTMKTKMVVRDVGRVLGIPPKEVDKFAKLIPND 473

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                    AI      +E    + ++ +LL+I+ KL+GL R    HAAG+VI    L++ 
Sbjct: 474  AKSI--EDAIDRAPEIKELAQENETISKLLKIASKLQGLARQTGVHAAGVVIAPDTLTKY 531

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601
            +P+ +    D   TQ++M  IE  GL+K DFLGLKTLT++ K++  + +R  +++D   I
Sbjct: 532  IPLAKSKDGD-ITTQYDMGQIESLGLLKMDFLGLKTLTIIDKTIKLIKERHGIEIDTRKI 590

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV-- 659
            P DD +T+ LL    T+G+FQLES GMR  +  ++P   EDIIALV+LYRPGP+++ +  
Sbjct: 591  PLDDEKTFKLLQEGNTVGVFQLESQGMRNLMRRLKPSVFEDIIALVALYRPGPLNSGMAE 650

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  RK+G E +  I P ++P LKET G+ IYQEQ+MQIA +L+GYSL EAD+LRRAMGK
Sbjct: 651  SYIRRKHGLEPVDYIFPELEPYLKETYGLFIYQEQIMQIANVLAGYSLGEADILRRAMGK 710

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ M++Q+  FI+ A + G  +     +F+ +AKFA+YGFNKSH+AAY  ++Y TA++
Sbjct: 711  KKKDVMEEQRNIFITRAVERGYPREKVEKLFDDIAKFAEYGFNKSHSAAYGFLAYVTAYL 770

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYP E +   ++++ D  ++I K  +D R+  I + PP VN     F +    I + L
Sbjct: 771  KAHYPKELMTTMLSIDYDKTDEIVKLIKDCRENGIPVFPPDVNKSDALFSIEGKGIRFGL 830

Query: 840  AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            A IKGVG   A+HI++    +  F  L DFC RVD K++N++V+ESL+ AGA D  G SR
Sbjct: 831  AGIKGVGEKAAQHIVKIRKENGEFKDLYDFCERVDLKQVNKKVIESLIKAGAFDSTGISR 890

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
               L+ LDN    AQ ++K ++    N+F +E    + +    K       ++ E E++ 
Sbjct: 891  AANLEVLDNAMSVAQSLQKTKSKGLMNLFDNETKIVNKE--FPKVREWPDRIKLEYERQA 948

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +GFY SGHPL  YK I+ +       E  +   G  ++LA  +     K+T++G     V
Sbjct: 949  IGFYLSGHPLLEYKDIV-QFSFDLTSEKDSWKDGQEVKLAGAITEVTTKRTQRGDLWATV 1007

Query: 1019 TFSEPAKEYEANFFP 1033
              S+         FP
Sbjct: 1008 EISDLEGTVSILVFP 1022


>gi|94263380|ref|ZP_01287194.1| DNA polymerase III, alpha subunit [delta proteobacterium MLMS-1]
 gi|93456216|gb|EAT06350.1| DNA polymerase III, alpha subunit [delta proteobacterium MLMS-1]
          Length = 1174

 Score = 1114 bits (2881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1035 (41%), Positives = 619/1035 (59%), Gaps = 17/1035 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YS+L+GA+ L+ +  K       A+AITD   +F ALEF  KA  AGI+P
Sbjct: 3    DFVHLHVHTQYSMLDGAIRLDRLFAKCREYGMEAVAITDHGAMFGALEFYVKAKKAGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  I            K+       ++LL     GYQ L++L +   L        
Sbjct: 63   IIGCEFYIAPDSR--RDKSAKSAGAAAHHLMLLAMDQTGYQNLMKLATIAQLEG-FHYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI L  L +   EGLI +T    G +           A        +LF  RLY+ +Q +
Sbjct: 120  RIDLEVLAD-HREGLIAMTACLHGKVPSLLVKGDKAGARAEAKRLHELFPGRLYLEMQEN 178

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +  ++      + +LA   ELPLVATN+  +L  E+ +AH+VL+ +     +  +DR R 
Sbjct: 179  QIPEQTTVNEGLKELAAELELPLVATNDCHYLDREEAKAHEVLLCIQTGKTMDSQDRFRF 238

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  + K+ +EM + F+  P+AL  TVEIA+RC+  L + +   P F     D +    
Sbjct: 239  ATDELFFKSPAEMKAAFAHSPQALAATVEIAQRCNLELDLESHHFPDFPVPTGDTLASLF 298

Query: 308  ENELRN-KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E E R   A    E+R  QG        + YRQRL+ E++VI +M F GYFLIVADFI W
Sbjct: 299  EREARAGLAQRLTEMRDKQGLTVGAELEEQYRQRLEHEIDVINQMGFPGYFLIVADFINW 358

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGSGAGS+ AYA+ ITD+DP+   L+FERFLN +R SMPDFD+DFCQ+R
Sbjct: 359  AKDQQIPVGPGRGSGAGSLVAYAMRITDVDPIPHGLIFERFLNIERKSMPDFDVDFCQER 418

Query: 427  RDEVIRYVQNKYGHE-RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            R EVI YVQ+KYG +  V QI+T+GS++AKA +RDVGRAL M + + DR+ KLIP++   
Sbjct: 419  RGEVIDYVQHKYGGQSHVVQIVTYGSMKAKAVVRDVGRALGMSFGEADRIAKLIPDELNI 478

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +AI  + +F+E    +P V  LL +++ LEGL RH S HAAG+VI  RP+ + +P+
Sbjct: 479  TLD-KAIDKEPKFKELMKREPQVAELLNVAKVLEGLNRHTSIHAAGVVISPRPMVEYLPL 537

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFD 604
             +  + ++ +TQ++MK  E  GLIKFDFLGLKTLT++ ++   +        D++ IP D
Sbjct: 538  CKGPKGEV-LTQYDMKHTEMTGLIKFDFLGLKTLTVIDRACKLIKADLDHEVDIAAIPMD 596

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
            D +T+ LL     LG+FQLESSGMR  L  M+P+   D+IALV+LYRPGP+++ +V  + 
Sbjct: 597  DAKTFDLLCKGDALGVFQLESSGMRSLLMKMKPEQFSDLIALVALYRPGPLESGMVEDFV 656

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            N K+G+         ++P+LKET GVI+YQEQVM+IA +L+GYSL +AD LRRAMGKKI 
Sbjct: 657  NTKHGRMVAKYPLAQLEPILKETYGVIVYQEQVMKIANVLAGYSLGDADNLRRAMGKKIP 716

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E M+ +K +F++G + NGI    A  IF+L+AKFA YGFNKSH+AAYA+I+YQTAW+K H
Sbjct: 717  EVMEAEKGKFMAGCADNGIDPKKAEYIFDLVAKFAGYGFNKSHSAAYALIAYQTAWLKAH 776

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP +F+AA ++ +M N +K+ ++  + R+  I+++PP +N    DF V D+RI + LAA+
Sbjct: 777  YPSQFMAALLSCDMGNTDKVVRYINECREHEIEVLPPDINESFRDFTVIDDRIRFGLAAV 836

Query: 843  KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K VG      I+E    D P+ SL DFC RVD +K+NRRV+ESL+ AGA D  G  R QL
Sbjct: 837  KNVGGAALDSIIEVRETDGPYQSLSDFCGRVDGRKVNRRVIESLIKAGAFDSLGAKRAQL 896

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---ITLEKFSVENSSVRFENEQRV 958
               LD     AQ  +++R +   ++FA      + +   I L + +  +   R   E+  
Sbjct: 897  FAILDQAMDQAQATQRDRQSGQISLFAAMPAEQAAQAQNIELPEIAEWDEKQRLLLEKET 956

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +GFY +GHPLD Y+  L  +      +         +R+  ++   +  +++KG  + ++
Sbjct: 957  VGFYLTGHPLDKYRRELAAVVDTDLHDLADWNEQQPVRVGGLIRHCKPHRSKKGDAMAFL 1016

Query: 1019 TFSEPAKEYEANFFP 1033
            T  +     E   FP
Sbjct: 1017 TLEDTLASAEVVIFP 1031


>gi|239993623|ref|ZP_04714147.1| DNA polymerase III subunit alpha [Alteromonas macleodii ATCC 27126]
          Length = 1154

 Score = 1113 bits (2880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1042 (40%), Positives = 601/1042 (57%), Gaps = 33/1042 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  F+HL+VHS +S+++G   +  IL K+AA   PA+AITD  N+   ++F  +A   GI
Sbjct: 2    SSPFIHLRVHSDFSMMDGLNKVKPILGKVAALGMPAVAITDQMNMCGLVKFYSEAHNLGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG    +  +                  + L+    EGY+ +  L+S+ YL      
Sbjct: 62   KPIIGTDFWVTNE----------VFGDEPFRLTLIAMNNEGYKNITILISKAYLRGHLSH 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL E  +EG+I L+G   G +      N++++ +  L  ++  F DR Y+ L 
Sbjct: 112  RAVIDQEWLAE-HSEGVIALSGAQHGDVGVGLMKNNAKILDSALEFYQTHFPDRFYLELI 170

Query: 188  RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R     +       V+LA    LP+VATN   F+  E ++AH++ + +     +    RP
Sbjct: 171  RTGRQGEEDYLHLAVELAEQRGLPVVATNEVCFIDREGFDAHEIRVCIHDGYTLDDNRRP 230

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R +   YL+   EMV +FSD+PEA+ENTVEIA+RC+  ++++   LP+F          
Sbjct: 231  KRYSDQQYLRTAEEMVELFSDIPEAIENTVEIAKRCNVTVRLNEYFLPQFPTG-----GM 285

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+ L   +  GLE RL         +     +Y  RL  EL VI +M F GYFLIV +
Sbjct: 286  TTEDFLVKVSEEGLEERLEFLFPDEEVRKAKRPEYDDRLRIELEVINQMGFPGYFLIVME 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 346  FIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP D
Sbjct: 406  CMDRRDEVIDHVAELYGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPD 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A   + +  E   +D  V  L+++++ LEG+ R+A  HA G+VI    ++  
Sbjct: 466  PGMTLE-KAFKAEPQLPEVYESDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPTTITDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
             P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++Q ++D + + + V VD+S I
Sbjct: 525  SPLYCDDEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKEGKNVDVDISAI 584

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV-- 659
            P +D +++  L    T  +FQLES GM++ ++ ++PDC EDIIALV+L+RPGP+ + +  
Sbjct: 585  PLEDPKSFRTLQNAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVD 644

Query: 660  VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
             + +RK+G+E+I        H  +  +L+ T G+I+YQEQVMQIAQ ++GYSL  AD+LR
Sbjct: 645  NFIDRKHGREEISYPDAEYQHECLKEILEPTYGIILYQEQVMQIAQEMAGYSLGGADLLR 704

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ+  F  GA  N I   +A+ IF+L+ KFA YGFNKSH+AAYA++SY
Sbjct: 705  RAMGKKKPEEMAKQRGTFAEGAKGNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSY 764

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833
            QT W+K HYP EF+AA M+ +MDN +KI     +  +  I+I+PP +NT    F V  + 
Sbjct: 765  QTLWLKVHYPAEFMAAVMSADMDNTDKIVTLVDECERMGIEILPPDLNTGKYKFTVDSEG 824

Query: 834  RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            RI Y + AIKGVG      I+EA      F  L DFC+++D K++N+RVLE LV AGA+D
Sbjct: 825  RIVYGIGAIKGVGEGPIEAIIEARETQGAFKDLFDFCAKIDIKRVNKRVLEKLVLAGAMD 884

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVR 951
              G  R  L+ SL      A    K  +    ++F        D K            V 
Sbjct: 885  NLGPHRASLMASLPEALAAAGQHAKAESFGQSDMFGLLTTEPEDVKQAFADVPEWPEKVW 944

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
             E E+  LG Y +GHP++ Y   LR        +   T +        +V+  +    ++
Sbjct: 945  LEGEKDTLGLYLTGHPINQYAEELRYYTDGRLVDLKPTNKDQMASAVGLVLGVRVMTNKR 1004

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G R   VT  + +   +  FFP
Sbjct: 1005 GRRWAIVTLDDKSARIDVRFFP 1026


>gi|145598935|ref|YP_001163011.1| DNA polymerase III subunit alpha [Yersinia pestis Pestoides F]
 gi|145210631|gb|ABP40038.1| DNA polymerase III, alpha subunit [Yersinia pestis Pestoides F]
          Length = 1171

 Score = 1113 bits (2880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1045 (40%), Positives = 607/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 74

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 75   PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   EGLI+L+GG  G + +     +    ++ L  +++ F D  Y+ L R
Sbjct: 125  PIIDRDWLIK-HKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYLELIR 183

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP 
Sbjct: 184  TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 243

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E       
Sbjct: 244  NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEM-----S 298

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  KA  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 299  TEDFLVEKAKQGLEERLEFLFPAPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVMEF 358

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 359  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFC 418

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 419  MEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDP 478

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 479  GMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 537

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 538  PLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDI 597

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 598  ASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 657

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD
Sbjct: 658  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 717

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 718  MLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 777

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 778  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 837

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA  +   F  L D C+RVD+KKLN+R+LE L+ +G
Sbjct: 838  DDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSG 897

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F          + +         
Sbjct: 898  AFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQE 957

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V++ +  
Sbjct: 958  QVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVM 1017

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1018 VTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|170023330|ref|YP_001719835.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis YPIII]
 gi|169749864|gb|ACA67382.1| DNA polymerase III, alpha subunit [Yersinia pseudotuberculosis YPIII]
          Length = 1171

 Score = 1113 bits (2880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1045 (40%), Positives = 607/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 74

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 75   PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   EGLI+L+GG  G + +     +    ++ L  +++ F D  Y+ L R
Sbjct: 125  PIIDRDWLIK-HKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYLELIR 183

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP 
Sbjct: 184  TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 243

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E       
Sbjct: 244  NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEM-----S 298

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  KA  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 299  TEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVMEF 358

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 359  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFC 418

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 419  MEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDP 478

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 479  GMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 537

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 538  PLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINVRRAKTGLEPIDI 597

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 598  ASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 657

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD
Sbjct: 658  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 717

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 718  MLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 777

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 778  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 837

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA  +   F  L D C+RVD+KKLN+R+LE L+ +G
Sbjct: 838  DDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSG 897

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F          + +         
Sbjct: 898  AFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQE 957

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V++ +  
Sbjct: 958  QVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVM 1017

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1018 VTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|322420562|ref|YP_004199785.1| DNA polymerase III subunit alpha [Geobacter sp. M18]
 gi|320126949|gb|ADW14509.1| DNA polymerase III, alpha subunit [Geobacter sp. M18]
          Length = 1156

 Score = 1113 bits (2879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1034 (39%), Positives = 617/1034 (59%), Gaps = 18/1034 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +HS YSLL+GA+ + ++L K+     PA+AITD  N+F  LEF  KA   GI+P
Sbjct: 5    NFVHLHLHSQYSLLDGAIRIGDLLKKVKDCHMPAVAITDHGNMFGTLEFFLKAKEKGIKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G ++ I                 T   ++LL     G++ L  LVS  Y  D   +  
Sbjct: 65   ILGSEVYIAPHSRTLKQAPTAADPVTSYHLILLCENMTGFKNLSYLVSAGY-KDGFYRRP 123

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +   EGLI+L+    G +      N    A      + + F    Y+ LQ +
Sbjct: 124  RIDKELLLK-HKEGLIVLSACLQGEVAYLAGRNKMDEARDAASWYAENFPGSYYIELQEN 182

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +  ++     +++++A    LPLVATN+  +L++ED  AH++L+ +     +S   R   
Sbjct: 183  KLPEQDIANKRLLEIAREMNLPLVATNDCHYLNQEDARAHEILLCIQTGKTMSDPTRMAF 242

Query: 249  TPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            + D +  K   EM   F   P+ALENTV+IA RC+          P +     + +    
Sbjct: 243  SVDEFYVKTPEEMAKAFHYAPDALENTVKIAERCNLEFDFKTYYFPAYEAPPGETL---- 298

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFI 364
            + +L  +A  GL +RL +  I           Y  RL  EL+ I +M F GYFLIVADFI
Sbjct: 299  DQQLEREATEGLVLRLEKIRIKYNLTEDQEKGYWDRLRIELDCIRQMGFPGYFLIVADFI 358

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAK + IPVGPGRGS AGS+ A+ + ITDIDP+ ++LLFERFLNP+R+SMPD D+DFCQ
Sbjct: 359  NWAKDHGIPVGPGRGSAAGSLVAFCIRITDIDPMPYNLLFERFLNPERISMPDIDVDFCQ 418

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVI+Y+  KYG E+V QIITFG++ A+  +RDVGRAL + +  VD++ KL+P    
Sbjct: 419  DRREEVIQYMVEKYGREKVCQIITFGTMAARGVIRDVGRALDLTFGDVDKIAKLVPEVLG 478

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  + + +E   ADP V  ++ ++ +LEGL RHASTHAAG+V+  R + +  P
Sbjct: 479  ITLE-KALEQEPKLKELMDADPKVKEVMTVALRLEGLARHASTHAAGLVVAPRQMEEFCP 537

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +Y+D ++    TQ++MK++EK GL+KFDFLGLK LT++  +   +   +    D++L+  
Sbjct: 538  VYKDQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIDNACKHIRAGKDPNFDITLLRD 597

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD E+Y LL    T G+FQLESSGM++ L  ++P C EDIIA+ +LYRPGP+ + +V  +
Sbjct: 598  DDEESYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLGSGMVDDF 657

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK+G+++ V   P ++P+LK+T GVI+YQEQVMQI++ L+GYSL  AD+LRRAMGKK 
Sbjct: 658  IERKHGRKQTVYDLPQLEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGADLLRRAMGKKD 717

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E+M K++++F+ G+ K G+       IF+L+AKFA+YGFNKSH+AAYA+++YQTA++K 
Sbjct: 718  AEQMAKERDKFLIGSEKLGLDSKKCAAIFDLMAKFAEYGFNKSHSAAYALVAYQTAFLKA 777

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEF+AA +T +M N +K+ K   D R+  I+++PP +N     F+V +  + + L A
Sbjct: 778  HYPVEFMAALLTEDMANTDKVVKSIGDCREMGIEVLPPDINESLRSFRVLEKAMRFGLGA 837

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +K VG      I+EA  D+PF  + DFC RVD +++N+RV+E+L+  GA DC G  R QL
Sbjct: 838  VKNVGEGAIEAIIEARGDEPFKDIFDFCERVDQRRVNKRVIEALIKCGAFDCTGAKRAQL 897

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFENEQRV 958
            + +L++     Q V++ R +   ++F   +   G+      L      +   R   E+  
Sbjct: 898  MAALEDAAVNGQRVQQERESAQASLFGAAEIQRGSNGSGNRLPDIPEWDEKYRLGCEKEA 957

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +GF+ +GHPLD Y   +R+         +     + I++  +  S ++  T+KG R+G+V
Sbjct: 958  IGFFITGHPLDRYVADMRRFSSVDCTSILEAKEKSEIKICGVPTSLKEIMTKKGDRMGFV 1017

Query: 1019 TFSEPAKEYEANFF 1032
               +     E   F
Sbjct: 1018 ALEDLVGSVEVVVF 1031


>gi|167771346|ref|ZP_02443399.1| hypothetical protein ANACOL_02712 [Anaerotruncus colihominis DSM
            17241]
 gi|167665986|gb|EDS10116.1| hypothetical protein ANACOL_02712 [Anaerotruncus colihominis DSM
            17241]
          Length = 1175

 Score = 1113 bits (2879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1035 (37%), Positives = 591/1035 (57%), Gaps = 28/1035 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL VH+ YSLL+GA  +  +++++ A  Q A+AITD   +F A++F + A   G++P
Sbjct: 13   DFAHLHVHTEYSLLDGACRIERLIERVKALGQSAVAITDHGVMFGAVDFYKCAKKHGVKP 72

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +      ++  T   +   ++LL     GYQ LI++VS  ++        
Sbjct: 73   IIGCEVYVAPRSRFDKQHKIDT---SPYHLILLCKNETGYQNLIKMVSAGFVEG-FYSKP 128

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI  + L++   EGLI L+   +G I R         A++  + ++ LF  D  Y+ +Q 
Sbjct: 129  RIDRALLEQYH-EGLICLSACLAGEIPRMLAQGDYACAKETAVWYRDLFGADNYYIEIQN 187

Query: 189  HRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H     +     +V+LA    + LVATN++ ++ + D     VL+ +  +T V       
Sbjct: 188  HGIRLQQQILPDLVRLAGEIGVGLVATNDAHYIEKADARMQSVLICIQTNTTVDAPGDLE 247

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + Y+K+R EM  +F + P AL+NT++IA +C+   +     LP F+    +D Q  
Sbjct: 248  FETEEFYIKSRDEMDELFGNYPGALDNTLKIAEQCNVEFEFGNTKLPLFVAPNGEDNQA- 306

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                 R     GL  R  +         +   +RL++ELN+I +M +  Y+LIV+DFI +
Sbjct: 307  ---YFRRLCAEGLRRRYGE------QPDRSVTERLEYELNIITKMGYVDYYLIVSDFINY 357

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGSGAGS+ AY + IT IDPLR+SLLFERFLNP+R+SMPDFDIDFC +R
Sbjct: 358  AKSVGIPVGPGRGSGAGSLAAYCIGITGIDPLRYSLLFERFLNPERISMPDFDIDFCYER 417

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG + VAQIITFG++ A+ A+RDVGR L M Y QVD + KL+PN+    
Sbjct: 418  RQEVIDYVVRKYGADHVAQIITFGTMAARGAIRDVGRVLGMSYQQVDSIAKLVPNELKMT 477

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+A  +  +     D  V  LL++++K+EG+ RHASTHAAG+VI   P+   VP+Y
Sbjct: 478  LD-KALAVSADLKTMCAEDKRVAELLDMARKIEGMPRHASTHAAGVVITRDPVDSYVPLY 536

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            +     +PVTQF M  +E+ GL+K DFLGL+TLT++  +    A+         +P DD 
Sbjct: 537  KA-EETMPVTQFTMTTLEELGLLKMDFLGLRTLTVISYAEKEAAKTHPGFSADAVPLDDP 595

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ET+ +LT    +G+FQ ES+GMR  +  + P  IED+IA++SLYRPGP+++I  Y   ++
Sbjct: 596  ETFAMLTKGQCVGVFQFESAGMRAVIAQLGPTSIEDLIAVISLYRPGPMESIPTYIRNRH 655

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E +   HPL+ P+L  T G I+YQEQVMQI + L GYS   AD++RRAM KK  + M+
Sbjct: 656  NPELVTYKHPLLKPILDVTYGCIVYQEQVMQICRALGGYSYGRADLVRRAMSKKKHDVME 715

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K++E F++GA +NG+++  A  IF+ ++ FA Y FNKSHAAAYA +SYQTA++K HYP E
Sbjct: 716  KEREAFVAGAQQNGVARETANQIFDEMSSFASYAFNKSHAAAYAFVSYQTAYLKCHYPRE 775

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+AA +T  +DN +K+ ++  +  +  I+++PP VN     F V    I + L A+K +G
Sbjct: 776  FMAALLTSVLDNTDKVIEYIGECNRMGIKVLPPDVNVSVEGFTVSGEEIRFGLLAVKNIG 835

Query: 847  TTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                R  I E  +   F +  DFC R+  K +N+R +ESL+ +GALDC   +R Q+L   
Sbjct: 836  RGFIRELIAERESGGVFQNFSDFCERMYGKDMNKRAVESLIKSGALDCVCKNRNQMLSGY 895

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            + I       +K       N+F    G       L        S     E+   G Y SG
Sbjct: 896  EAILDDIDSAQKRNIAGQINLFDTAAGASKPIHILPNVEELEPSKLLAMEKETTGLYISG 955

Query: 966  HPLDVYKPILRKMGIKGYEESVATI-------RGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            HP+  ++ ++ K       +  +          G  +R+AA+V S++ K TR G  + +V
Sbjct: 956  HPMARFQEMVSKNNCTLIADITSAEERGSGVADGTQVRVAAIVNSRRLKSTRGGEMMAFV 1015

Query: 1019 TFSEPAKEYEANFFP 1033
               + +   E   FP
Sbjct: 1016 RLEDTSGSMEMLVFP 1030


>gi|197334671|ref|YP_002156775.1| DNA polymerase III subunit alpha [Vibrio fischeri MJ11]
 gi|197316161|gb|ACH65608.1| DNA polymerase III subunit alpha [Vibrio fischeri MJ11]
          Length = 1159

 Score = 1113 bits (2878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1046 (39%), Positives = 611/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+++G   +  ++  +     PA+A+TD  NL   +++   A  AG
Sbjct: 2    SEPKFVHLRVHSDFSMVDGLSKVPPLVKNVGELGMPAMALTDFTNLCGLVKYYFAAHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG               Q +     + ++ +L    EGY+ L  L+S  Y     +
Sbjct: 62   IKPIIGA----------DFKVQSQEFGNELFNLTVLAKDNEGYKNLTLLISEAYQRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             +  +   WL     EGLI+L+GG SG + +A    + ++  + +  ++  F +  Y+ L
Sbjct: 112  HTPVMDKEWLVN-HKEGLILLSGGKSGDVGKALLKGNKELVNECVEFYQTHFPEHYYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+  +D++AH++ +A+     +    R
Sbjct: 171  TRTGRADEESYLHFAVELAEKENLPVVATNDVRFIKADDFDAHEIRVAIHDGFTLEDPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   YL++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKLYSDQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + E+ L  K+  GLE RLA        +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  MKIEDFLVKKSQEGLERRLAFLFPDEKVRLERRPEYDERLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID
Sbjct: 346  EFIQWSKDNAIPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDID 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P+
Sbjct: 406  FCMDKRDQVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPS 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPELYNADEEVKALIDMCRILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPLYCDADGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLEKEGKDPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  +++LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIESIPLDDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  +   L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 645  SGMVDNFIDRKHGREEVSYPDATWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRGTFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN +KI     +  +  + ++PP VN+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTDKIIGLVDECFRMKLTVLPPDVNSGLYRFN 824

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V     I Y + AIKGVG     +I+EA      F  L DFC+R+D+KK N+RV+E L+ 
Sbjct: 825  VDEKGAIVYGIGAIKGVGEGPIENIIEARNKGGHFKDLFDFCARIDTKKTNKRVVEKLIR 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  L+ SLD+  K A    +  +    ++F    +     +         
Sbjct: 885  AGALDRLGPHRAALMASLDDAMKAAGQHHQAESFGQSDMFGVLTQAPEEVEQAYIHVPKW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L +       ++  T R   + +A +V++ + 
Sbjct: 945  PEKVWLEGERETLGLYLTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|261408717|ref|YP_003244958.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10]
 gi|261285180|gb|ACX67151.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10]
          Length = 1241

 Score = 1113 bits (2878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1045 (37%), Positives = 612/1045 (58%), Gaps = 32/1045 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL+GA  + +++ + AA    ++A+TD   ++ A+ F +   A GI+P
Sbjct: 3    SFVHLHVHSEYSLLDGAARIGDLVREAAALGMKSLALTDHGVMYGAVPFYKACLAQGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  I      +   +G      +  ++LL     GY+ L++L S  +L        
Sbjct: 63   IIGCEAYITAGSRKE---RGSRKDQPIYHLILLAKNETGYRNLMKLCSIGHLEG-YHYRP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI +  L     EG+I L+    G + +         A+   L ++ +FG+  Y+ LQ H
Sbjct: 119  RIDMEALA-AHHEGIICLSACLGGEVPQHLLHGREAEAKAAALRYQAIFGEDYYLELQDH 177

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ R   Q++QL+    +PLVATN+  +L+E D E  DVL+ +     V  +DR ++
Sbjct: 178  GMPEQKRVNPQLIQLSRETGIPLVATNDVHYLTENDAEVQDVLICIGTGKTVEDEDRLQI 237

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              +  YLK+ S+M  ++  +PEA+ NT +IA +C   L+    ILP +         K  
Sbjct: 238  QTNQLYLKSGSDMERLYPHVPEAILNTAKIADQCHLELEFGKSILPEY---SSLPEGKNA 294

Query: 308  ENELRNKAVAGLEVRLAQGAI-AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               LR+  ++GL  R  +           +  QRLD+EL VI  M FS YFLIV DFI +
Sbjct: 295  AEYLRDLCLSGLRERYEETERWQDEVQRSELEQRLDYELGVIESMGFSDYFLIVWDFIAY 354

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF  +R
Sbjct: 355  AHRKGIAVGPGRGSSAGSLVAYTLQITNVDPMKYKLLFERFLNPERITMPDIDIDFSDER 414

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG E VAQIITFG++ A+AA+RDVGRAL +P+  VD+  KLIPN     
Sbjct: 415  RDEVIDYVVDKYGKEHVAQIITFGTMAARAAVRDVGRALNVPFGDVDKAAKLIPNHLGIS 474

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+    + +E     P V  L++++ K+EG+ RHASTHAAGIVI   PL+  VP+ 
Sbjct: 475  IE-RAMEQSPQLKEQYETKPKVRELIDMAMKVEGMPRHASTHAAGIVISREPLTDAVPLQ 533

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
             +      +TQ++M+ +E  GL+K DFLGL+TL++++++L ++ +  G ++D   +P DD
Sbjct: 534  -EGSEKTALTQYSMENLESVGLLKMDFLGLRTLSIIERTLKWIQELTGSELDFEQVPDDD 592

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              TY +L    T G+FQLES+G+R+ L+ ++P   EDI+++ +LYRPGP++ I  +   K
Sbjct: 593  QATYEMLGRGETAGVFQLESAGIRRVLKDLKPSVFEDIVSVNALYRPGPMEFIPKFIQAK 652

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+ +    HP + P+L +T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E +
Sbjct: 653  HGRIEPEYPHPDLIPILGDTYGIIVYQEQIMQIASTMAGFSLGEADLLRRAVSKKKREVL 712

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F+SG+ K G ++  A  +++++ +FA+YGF ++HAAAY V+++QTA++K HYPV
Sbjct: 713  DRERSHFVSGSLKLGYTEDEANRVYDMIVRFANYGFPRAHAAAYGVLAFQTAYLKAHYPV 772

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI---------- 835
             F+A+ +T  M +  K+ ++  +AR+ +I++MPP VN     F    +R           
Sbjct: 773  PFMASMLTAVMGSHRKVAEYVLEARRIDIEVMPPDVNESGTYFTPVMSRTAAEGSDKQAD 832

Query: 836  -------YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                    + LAAIK VGT    +I+E   +KPF+SL DFC RVD +  N+RV+ESL+ A
Sbjct: 833  SPAGGGIRFGLAAIKNVGTQAVENIVEIRREKPFESLLDFCRRVDLRVCNKRVIESLIQA 892

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D     R QL+  LD   + A    K R +    +F   +    D I         +
Sbjct: 893  GAFDSLQGHRSQLVAMLDETVEAAVKWRKERDDLQIQLFDFVETANWD-IEYPDIPPYTA 951

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
            S + E E+ +LG Y SGHPLD ++  L + G     +       +   +A MVVS +   
Sbjct: 952  SQQLEFERELLGMYLSGHPLDGFEETLTESGADRLMDLHEAEDESMATVAGMVVSLKTIT 1011

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T++G  + ++   +  +  E   FP
Sbjct: 1012 TKQGKSMAFMECEDQIERCEVVLFP 1036


>gi|120553848|ref|YP_958199.1| DNA polymerase III subunit alpha [Marinobacter aquaeolei VT8]
 gi|120323697|gb|ABM18012.1| DNA polymerase III, alpha subunit [Marinobacter aquaeolei VT8]
          Length = 1162

 Score = 1113 bits (2878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1051 (39%), Positives = 620/1051 (58%), Gaps = 41/1051 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  + +FVHL+VHS YS+++G + +  ++ ++A    PA+ +T+ +N+ S + F + A  
Sbjct: 1    MTMANTFVHLRVHSEYSMVDGLVRVKPLIGRVAELGMPAVGLTEQSNMCSLVRFYKAAMG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG  + ++  D  +              + LL    +GY  L E++S  Y   Q
Sbjct: 61   AGVKPIIGADIWLENPDEPE----------NPFRLTLLARDNDGYLNLTEVISLGYTEGQ 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  +  SWL E   +GLI+L+G   G + +A      ++A +R   ++ L+ D  Y+
Sbjct: 111  RYGKPIVQKSWL-ESRAKGLIVLSGAKMGDVGKALLAGKPELARERADYWRNLYPDSYYL 169

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR  R  D       V+LA    LP+VATN+  FL  +D+EAH+  + +  S  +   
Sbjct: 170  ELQRTGRAGDEDCLHMSVELAAELGLPVVATNDVHFLEADDFEAHEARVCIGESRTLDDP 229

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R R  +   YL++  EM+ +FSD+PEA+ENTVEIARRCS  +++    LP +   +   
Sbjct: 230  RRDRRFSDQQYLRSAEEMIELFSDIPEAVENTVEIARRCSVKVRMGEYFLPNYPIPDGMT 289

Query: 303  IQKEEENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +    +   R+ +  GLE RLA    +         ++Y +RL FEL++I +M F GYFL
Sbjct: 290  M----DEYFRHVSEEGLEARLAKTLSKDDPEYDQKREEYYKRLKFELDIIIQMGFPGYFL 345

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDF
Sbjct: 346  IVMDFIKWAKNNGVPVGPGRGSGAGSLVAYALLITDLDPLEYDLLFERFLNPERVSMPDF 405

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC + RD VI Y   KYG E V+QIITFG++ AKA +RDV R     Y   D+L KL
Sbjct: 406  DVDFCMEGRDRVIDYTAQKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKL 465

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP +    ++ +AI  + + +E    D     + E++ KLEG+ R+A  HA G+VI    
Sbjct: 466  IPFEVGMTLN-KAIEQEPQLKEFLEQDEEAQEIWEMALKLEGVCRNAGKHAGGVVIAPTK 524

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-- 596
            ++   P+Y D      VTQF+   +E AGL+KFDFLGL+TLT+++ +L+ +  R  +   
Sbjct: 525  ITDFSPLYCDDEGGSLVTQFDKGDVEDAGLVKFDFLGLRTLTIIKWALNMINPRRQQRGE 584

Query: 597  ---DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
               D+S IP DD  ++ +L    T  +FQLES GM+  +  +QPD +ED+IALV+L+RPG
Sbjct: 585  GELDISAIPLDDKPSFDMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPG 644

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V  + +RK+G++ +   HP      + P+L+ T GVI+YQEQVMQIAQ+++GY+
Sbjct: 645  PLQSGMVDDFIDRKHGRQPLSYPHPDYQYQGLKPVLEPTYGVILYQEQVMQIAQVMAGYT 704

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQK  F+ G   NGI KT+A NIF+L+ KFA YGFNKSH+
Sbjct: 705  LGGADMLRRAMGKKKPEEMAKQKAIFLDGCENNGIDKTLAENIFDLVEKFAGYGFNKSHS 764

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+K HYP EF+AA +T +M N +K+    ++ R   + ++ P V+    
Sbjct: 765  AAYALVSYQTLWLKAHYPAEFMAAVLTADMQNTDKVVTLVEECRNMKLDLLVPDVSRSAY 824

Query: 827  DFKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             F V D     Y L AIKG+G      I+EA+   PF  + DFC RVD KK+N+R +E+L
Sbjct: 825  TFTVNDQGQIVYGLGAIKGLGEGPIESIVEAAKAGPFQDIFDFCRRVDLKKVNKRAMEAL 884

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFS 944
            + +GA+D  G  R +L+ S+D   + A    +N      ++F    +G   D+ T    +
Sbjct: 885  IRSGAMDKLGADRAKLMASIDKAIQQADQQSRNDAAGMVDMFGEMLEGGGDDEDTYADVA 944

Query: 945  ---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                     R + E+  LG Y +GHP D Y+  +R+       +       +  R+A +V
Sbjct: 945  HVREWPEKERLKGEKDTLGLYLTGHPFDEYEREVRRFVRCSIADL--KPNKSPQRVAGLV 1002

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V+++  KT+ GS + ++T  + +   EA  F
Sbjct: 1003 VAQRTMKTKTGSTMCFITLDDRSARIEATLF 1033


>gi|307718499|ref|YP_003874031.1| DNA polymerase III subunit alpha [Spirochaeta thermophila DSM 6192]
 gi|306532224|gb|ADN01758.1| DNA polymerase III subunit alpha [Spirochaeta thermophila DSM 6192]
          Length = 1136

 Score = 1113 bits (2878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1032 (40%), Positives = 610/1032 (59%), Gaps = 23/1032 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL VHS YSLL+G++   +++ ++      A+A+TD  NLF  +EF +KA A
Sbjct: 1    MSTHP-FVHLHVHSDYSLLDGSIKTGDLVKRVKELDMDAVALTDHGNLFGMIEFYKKARA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+ PI+GC+  +  +                  ++LL     GY  L++LV+  YL   
Sbjct: 60   AGVTPILGCECYVAPESRTLK----DQDHAANYHLILLAENYTGYLNLLKLVTESYLTG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
                 RI    L     EGLI L+    G I           A +R   ++ LF  DR Y
Sbjct: 115  FYYKPRIDDGLLA-AHHEGLIALSSCLGGEIPSLILGRQIDKARERARFYRDLFGPDRFY 173

Query: 184  VNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ H   ++ R ++ +V+L+   ++PLVATN+  +L  E  EAH+VL+ +  +  +S 
Sbjct: 174  LELQDHGLPEQKRVNKTLVELSKELDIPLVATNDVHYLLREHAEAHEVLLCIGTNKKLSD 233

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            +DR R  T + YLK+  EM  +F D+PEALENTV IA RC+F +    P+LP +   E  
Sbjct: 234  QDRMRFETQEFYLKSPEEMARLFEDIPEALENTVRIAERCAFEIPFPGPLLPEYHIPEGF 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D     E  LR+    GL+ R  Q         ++ R+R D EL++I +M F+GYFLIV 
Sbjct: 294  D---SPEAYLRHLTYEGLKKRYHQ-------ITREIRERADLELSIIIQMGFTGYFLIVW 343

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF+ +AK+  IPVGPGRGSGAGS+ AYAL IT+IDPL++ LLFERFLNP+R+SMPDFDID
Sbjct: 344  DFVHFAKEQGIPVGPGRGSGAGSIVAYALGITNIDPLKYGLLFERFLNPERISMPDFDID 403

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC  RR+EVI YV  KYG +RVAQIITFG+L+ KA ++DV R L +P+++ + L KL+ +
Sbjct: 404  FCYARREEVIDYVTRKYGKDRVAQIITFGTLKPKAVIKDVARVLGIPFAEANELTKLMGD 463

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
              +     +AI  + R       D +  RL +I   L+GL RHASTHAAGIVIG   L+ 
Sbjct: 464  ASSVE---EAIQREPRLARLAEEDETYTRLFQIGSVLQGLSRHASTHAAGIVIGREALTN 520

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
             VP+YRD ++    TQ++M+ +E  GL+K DFLGLKTLTL+  + + +       D   I
Sbjct: 521  YVPLYRDPKTGDISTQYSMEHLEDCGLVKMDFLGLKTLTLITHTEELVRTHTPDFDTERI 580

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD +T+ LL    +  +FQ ES GM+  L   +P+ IE++IAL +LYRPGP+  I  +
Sbjct: 581  PEDDAQTFQLLAEGKSTCVFQFESEGMQNILRRAKPESIEELIALNALYRPGPMQFIDQF 640

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K G+ KI   HP ++P+LKET GVI+YQEQVMQIAQ ++GY+L  AD+LRRAMGKK 
Sbjct: 641  IEAKQGRRKITYPHPDLEPILKETYGVIVYQEQVMQIAQKIAGYTLGGADILRRAMGKKK 700

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E M K+KE+FI+GA   G S+  A  +F+LL  FA YGFNKSHAAAY+V++Y+TA++K 
Sbjct: 701  PEVMAKEKEKFITGAVAQGYSRQFAEELFDLLIPFAGYGFNKSHAAAYSVLAYKTAYLKA 760

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP EF+AA++T E+ N +K+ ++  + R   I+++PP +N     F V D +I Y L  
Sbjct: 761  HYPAEFMAANLTNEIGNPDKLAQYIGETRAMGIEVLPPDINASERYFTVRDGKIVYGLVG 820

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IK VGT     I+    + PF S  DF  RVD + +NR+V+E+ + AG  D    +R +L
Sbjct: 821  IKNVGTAAVEEILGKRKEGPFTSFIDFLFRVDLRTVNRKVIETCIQAGVFDSLHPNRAEL 880

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            + +L+ +  +   +++ +      +F   +    ++         ++  +   E+ +LGF
Sbjct: 881  MHNLEALLAHVNRIKEQQEASQGFLFEETETQIREEFQFTPVEDWDTMEKLRYERELLGF 940

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            YFS HPLD  + I  K           T      +L  ++ + ++  T+KG+R+ + T  
Sbjct: 941  YFSSHPLDHLREIWEKGVNLDLSHPERTDPSRTYQLMGVLKTVREITTQKGNRMAFGTIE 1000

Query: 1022 EPAKEYEANFFP 1033
            +     EA FFP
Sbjct: 1001 DYRGSIEAVFFP 1012


>gi|299135003|ref|ZP_07028194.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2]
 gi|298589980|gb|EFI50184.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2]
          Length = 1135

 Score = 1113 bits (2878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 527/1012 (52%), Positives = 698/1012 (68%), Gaps = 12/1012 (1%)

Query: 28   SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTN 87
             +  + +   AD QPA+A+TD +N+F ALEFS+K    GIQPIIGC L +D  D      
Sbjct: 2    KIPKLAELAKADHQPALALTDRDNMFGALEFSEKLAGVGIQPIIGCALAVDFGDVDPNAR 61

Query: 88   QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML 147
              +   P    IV+L ++ EGY+ L+ L SR +L   G+Q   I   WL++  T GLI L
Sbjct: 62   NAQALGPA--RIVMLAASQEGYRSLMRLNSRAFLDMPGQQIPHIKAEWLKD-DTSGLIAL 118

Query: 148  TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYT 206
            TGG  GP+ +A      ++A +R+     LFGDRLY+ LQRH    +R  ES ++ +AY 
Sbjct: 119  TGGPEGPVSQALTAEQPELALQRVEKLVGLFGDRLYIELQRHGLDSERRVESALIDIAYG 178

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
              LPLVATN   F + +DYE+HD L+ +A   ++++ +R  +TPDH  K R+EM  +F+D
Sbjct: 179  KGLPLVATNEPYFATADDYESHDALLCIAGGRLIAETERAHLTPDHRFKTRAEMAVLFAD 238

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRFIEKEC--DDIQKEEENELRNKAVAGLEVRLA 324
            LPEAL +TVEIA+RCSF  +   PILP F       +D    E  EL+ +A  GL  R+ 
Sbjct: 239  LPEALASTVEIAQRCSFRPKTRKPILPHFTVGSGHHEDPSAAEAAELQRQAQEGLAHRIE 298

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +  +A+G   +DY  RL FEL+VI RMK+ GYFLIV+DFI+WAK   IPVGPGRGSGAGS
Sbjct: 299  KHGLAEGQTEEDYYNRLAFELDVIKRMKYPGYFLIVSDFIKWAKAQGIPVGPGRGSGAGS 358

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            + AYALTITD+DPLRF LLFERFLNP+R+SMPDFDIDFCQDRR EVI YVQ +YG ++V 
Sbjct: 359  LVAYALTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQDRRGEVIHYVQERYGRDQVG 418

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA-IADDSRFREARL 503
            QIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P +PA PV+L A IA + + +  R 
Sbjct: 419  QIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPVTLAAAIAGEPKLQAFRD 478

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563
             DP V R  +I+Q+LEGL RHASTHAAGIVIGDRPLS+LVPMYRD +SD+PVTQFNMKW+
Sbjct: 479  EDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELVPMYRDPKSDMPVTQFNMKWV 538

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
            E AGL+KFDFLGLKTLT+L  ++  L QR V VDL+ +P DD ETY +LT    +G+FQ+
Sbjct: 539  EPAGLVKFDFLGLKTLTVLDVAVKLLKQRNVHVDLAHLPLDDKETYEMLTRGDVVGVFQV 598

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  Y  RK+G E+   +HP+++P+LK
Sbjct: 599  ESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCARKHGDEEPEYLHPVLEPILK 658

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMGKKI+ EM+KQ+ RF+SG+ ++ I+K
Sbjct: 659  ETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGKKIRAEMEKQRVRFVSGSVEHSITK 718

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
              A  IFELLAKFADYGFNKSHAAAYA++SYQTA+MK HYPVEF+AASMTL+  N +K+ 
Sbjct: 719  GQAEQIFELLAKFADYGFNKSHAAAYALVSYQTAFMKAHYPVEFIAASMTLDTGNTDKLS 778

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPF 862
            +F  +A++  I++ PPS+N     F VG N I+YSLAA+KGVGT     I+EA  +  PF
Sbjct: 779  EFRAEAQRLGIKVEPPSINRSEGTFTVGGNTIFYSLAALKGVGTHAVDMIVEARKNGGPF 838

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             SL DF +RV  + +N+RVLESL  AGA D F  +R  +    D I    Q      T  
Sbjct: 839  TSLADFAARVPPRAINKRVLESLAAAGAFDEFNPNRAAVFAGADAILAACQRSHDAVTLG 898

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
              ++F  + G  +  + L        + R + E   +GF+ SGHPLD Y+ +L+++ ++ 
Sbjct: 899  QSDMFGSQSG--APTLILPNVEPWLPAERLQREYGAVGFFLSGHPLDDYRVVLQRLNVQS 956

Query: 983  YEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + E    ++      ++AA VVS+ +++T+ G+++G +  S+P   +EA  F
Sbjct: 957  WAEFSNAVKNGRTAGKVAATVVSRMERRTKTGNKMGIIGLSDPTGHFEAVLF 1008


>gi|323136417|ref|ZP_08071499.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242]
 gi|322398491|gb|EFY01011.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242]
          Length = 1153

 Score = 1112 bits (2877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 528/1040 (50%), Positives = 700/1040 (67%), Gaps = 18/1040 (1%)

Query: 5    LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            + K+ P FVHL VH+++SL EGALS+  ++D    D+QPA+A+TDTNNLF+ALEFS+KA 
Sbjct: 1    MTKADPGFVHLHVHTAFSLREGALSIGKLIDLAVRDEQPALAVTDTNNLFAALEFSEKAA 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AG+QPI G QL +D  D       G+     + ++VLL  T  GY+ L+ L SR YL  
Sbjct: 61   KAGLQPIAGVQLCVDFGDGKSGGLAGQ--DERLANLVLLAKTEAGYRNLMRLASRAYLET 118

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +   +  + L+ L     E LI LTGG  G +DRAF     + A  RL   +++F +RLY
Sbjct: 119  EQGDAPHVTLAALSADAEE-LIALTGGPDGALDRAFAAGRPEQARARLDVLERMFNNRLY 177

Query: 184  VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +QRH+   +   E Q++ +AY   LPLVATN   F S  D+EAHD L+ +A  TV S 
Sbjct: 178  IEIQRHKLKLELEVEPQLLDIAYRRGLPLVATNEPYFASLGDFEAHDALLCIAEGTVTSV 237

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             +R RV+P+H+ K R++M ++F+DLPEA  NTVEIARR SF  +   PI+PRF+    DD
Sbjct: 238  SERRRVSPEHWFKTRADMRALFADLPEATANTVEIARRVSFRPKTRKPIMPRFMRDTPDD 297

Query: 303  --IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              + + E  ELR +A  GLE RLA    A+G+  +DY  RLDFEL+ I +M F GYFLIV
Sbjct: 298  RPLNEVEAEELRRQATEGLEARLAAHGPAEGHAREDYFARLDFELSTIEKMGFPGYFLIV 357

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI++AK   IPVGPGRGSGAGS+ AYALTITD+DPLRF L FERFLNP+R+SMPDFDI
Sbjct: 358  SDFIKYAKSKGIPVGPGRGSGAGSLVAYALTITDLDPLRFGLFFERFLNPERVSMPDFDI 417

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ RR EVI YV+++YG +RVAQIITFGS  A+  LR VGR L+MP  QVD+L KL+P
Sbjct: 418  DFCQTRRGEVIEYVRDRYGADRVAQIITFGSFLARGVLRSVGRVLEMPLGQVDKLAKLVP 477

Query: 481  NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +PA PV+L +A+A + + REA   D  V RL +++  LEGLY +ASTHAAG+VIGDRPL
Sbjct: 478  QNPAKPVTLAEALAGEQKLREAAAEDERVARLFKVAGALEGLYSNASTHAAGVVIGDRPL 537

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             ++ P+YRD +SD+P TQFNMKW+E AGLIKFDFLGLKTLT+L  + D   +R    DL+
Sbjct: 538  HEVTPLYRDPKSDMPATQFNMKWVEPAGLIKFDFLGLKTLTVLAMAGDLARRRDPDFDLA 597

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P DD ETY +L    T+G+FQLES+GMR+AL  M  D  EDIIALV+LYRPGP+ NI 
Sbjct: 598  KVPLDDPETYAMLGRGETVGVFQLESAGMRKALVEMHADRFEDIIALVALYRPGPMANIP 657

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y   K G E+    HP I+P+LKET GVIIYQEQVMQIAQ+LSGY+L EAD+LRRAMGK
Sbjct: 658  TYCAVKLGDEEADYYHPKIEPILKETFGVIIYQEQVMQIAQVLSGYTLGEADMLRRAMGK 717

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KIK EMD Q+ERF+ GA +  +   +A  IF+LLAKFADYGFNKSHAAAYA+I+YQTAW 
Sbjct: 718  KIKAEMDAQRERFVKGAIEREVKADLANFIFDLLAKFADYGFNKSHAAAYALIAYQTAWF 777

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNR 834
            K HYP EFLAASMT +    +K+ +F  +AR+  I + PPS+    VDF V     G   
Sbjct: 778  KAHYPAEFLAASMTFDKSQTDKLAEFRDEARRLGIAVEPPSIRRSGVDFDVAPGSDGKLA 837

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I Y+L+AIKGVG   A  I+ A  D PF SL DF  R++ +++N++VLE+L   GA D  
Sbjct: 838  IRYALSAIKGVGEGQAESIVRARGDLPFKSLSDFARRINPREVNKKVLENLAACGAFDEL 897

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
               R     +++ +   A    ++R      +F   +   +D + L + +  N++ R + 
Sbjct: 898  QPDRATAFAAVEPVLAAANRHTEDRKAGQNALFGEAE---ADDLVLPRVTPWNAAERLQR 954

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKG 1012
            E    GF+ SGHPLD Y  +L K+ +  + + VA ++G     RLAA+V+ + +++T+ G
Sbjct: 955  EYDAAGFFLSGHPLDAYAGLLPKLRVSRWSKFVADVKGGATAGRLAAVVLDRAERRTKSG 1014

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            S++G V  S+   +YEA  F
Sbjct: 1015 SKMGIVQLSDTTGQYEAILF 1034


>gi|261822584|ref|YP_003260690.1| DNA polymerase III subunit alpha [Pectobacterium wasabiae WPP163]
 gi|261606597|gb|ACX89083.1| DNA polymerase III, alpha subunit [Pectobacterium wasabiae WPP163]
          Length = 1160

 Score = 1112 bits (2877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1045 (40%), Positives = 608/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ K AA   PA+AITD  NL   ++F   A  AG++
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          +       +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 64   PIIGADFYV----------ESDELGDELAHLTVLAMNNEGYQNLTLLISHAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+GG  G + R     +   AE+ +  +++ F  R Y+ L R
Sbjct: 114  PTIDRDWLIE-HQEGLILLSGGRRGDVGRFLLRGNQAQAEQCVAFYQEHFPQRYYLELTR 172

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
              R  +       V+LA  + LP+VATN   F+S +D++AH++ +A+     +    RP 
Sbjct: 173  TSRPDEESYIHSAVELATKYGLPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E       
Sbjct: 233  HYSPQQYMRSEEEMCELFADIPEALVNSVEIAKRCNVTIRLGEYFLPQFPTGEM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              + L   +  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TADFLVQCSKKGLEDRLEFLFPDPEVRAARRLEYDERLDIELGVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 527  PLYCDSEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKQGQEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   G++  +AV IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKNPVEMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA      F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F          + +         
Sbjct: 887  AFDRLGPHRAALMNSLADALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVPPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V++ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTAVGLVLAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGVCTLDDRSGRLEIMLF 1031


>gi|86749719|ref|YP_486215.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris HaA2]
 gi|86572747|gb|ABD07304.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris HaA2]
          Length = 1151

 Score = 1112 bits (2877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 525/1034 (50%), Positives = 708/1034 (68%), Gaps = 14/1034 (1%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
                FVHL VHS+YSLL+G++ +  + D   AD QPA+A+TDT+N+F ALEFS K   +G
Sbjct: 2    SQAGFVHLHVHSAYSLLKGSMKIARLADLAKADHQPALALTDTDNMFGALEFSDKLAGSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPI+G +L ID  D    +       P    +VLL +   GY+ L+ L SR +L     
Sbjct: 62   IQPIVGLELGIDFGDQDPTSRNAALAAPA--RVVLLATRERGYRSLMRLNSRAFLETPVN 119

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q   I   WL +  T+ +I LTGG  GPI  A       +   R     + FGDRLYV L
Sbjct: 120  QPPHIKFDWL-DGETDDVIALTGGPEGPISLAMLT-DPALGRLRCERLAQAFGDRLYVEL 177

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH    +R  E+ ++ +AY   LPLVATN   F + +D+EAHD L+ +A   ++++ DR
Sbjct: 178  QRHNTDVERRAEAGLIDIAYDMGLPLVATNEPHFATADDFEAHDALLCIASGKLIAETDR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK----ECD 301
             ++TPDH  K R+EM  +F+DLPEAL +TVEIA+RC++      PILP F       + +
Sbjct: 238  VQLTPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVNDAE 297

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +    E  ELR +A  GL  R+    +++G   +DY++RL FEL+VI RMK++GYFLIV+
Sbjct: 298  EAAAAEAAELRRQAEQGLADRMRVHGLSQGMTEEDYQKRLAFELDVITRMKYAGYFLIVS 357

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFDID
Sbjct: 358  DFIKWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFDID 417

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR EVI YVQ++YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P 
Sbjct: 418  FCQDRRGEVIEYVQHRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQ 477

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA PVSL+ AI  + + +  R  DP V R  +I+QKLEGL RHASTHAAGIVIGDRPLS
Sbjct: 478  NPAAPVSLKQAIESEPKLQAFRDEDPVVARAFDIAQKLEGLTRHASTHAAGIVIGDRPLS 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
             LVPMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QR + +DL+ 
Sbjct: 538  DLVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRDIHIDLAT 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +  +D  +Y +L     +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  
Sbjct: 598  LGIEDPVSYQMLARGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPT 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMGKK
Sbjct: 658  YCARKHGDEESEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+ EM+KQ+  F+ GA+KNG+ K  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+MK
Sbjct: 718  IRAEMEKQRAIFVEGATKNGVPKDSADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEF+AASMTL+++N +K+ +F  +A++  I++  PSVN     F+VG N IYY+LA
Sbjct: 778  AHYPVEFIAASMTLDLNNTDKLSEFRAEAQRLGIKVEAPSVNRSGPTFEVGANTIYYALA 837

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             +KGVG    + I+EA  DKPF SL DF +RV+ + +N+RV+ESL  AGA DC   +R +
Sbjct: 838  GLKGVGLQAVQMIVEARGDKPFASLADFAARVNPRAINKRVIESLAAAGAFDCLDSNRAR 897

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +    D I    Q   +  T+   ++F       + ++ L +      + R   E   +G
Sbjct: 898  VFAGADAIIAACQRSHEAATSGQNDMFGGLAD--APQVVLPQIEPWLPAERLRREYDAIG 955

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018
            F+ SGHPLD Y   L+++ ++ + E   A   G    ++AA VVS+ +++T+ G+++G +
Sbjct: 956  FFLSGHPLDDYATALKRLRVQSWAEFCKAVKSGATAGKVAATVVSRMERRTKTGNKMGIM 1015

Query: 1019 TFSEPAKEYEANFF 1032
              S+P   +EA  F
Sbjct: 1016 GLSDPTGHFEAVLF 1029


>gi|315187035|gb|EFU20792.1| DNA polymerase III, alpha subunit [Spirochaeta thermophila DSM 6578]
          Length = 1136

 Score = 1112 bits (2876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1032 (40%), Positives = 607/1032 (58%), Gaps = 23/1032 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL VHS YSLL+G++   +++ ++      A+A+TD  NLF  +EF +KA A
Sbjct: 1    MSTHP-FVHLHVHSDYSLLDGSIKTGDLVKRVKELGMDAVALTDHGNLFGMIEFYKKARA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+ PI+GC+  +  +                  ++LL     GY  L++LV+  YL   
Sbjct: 60   AGVTPILGCECYVAPESRTLK----DQDHAANYHLILLAENYTGYLNLLKLVTESYLTG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
                 RI    L     EGLI L+    G I           A +R   ++ +F  DR Y
Sbjct: 115  FYYKPRIDDGLLA-AHHEGLIALSSCLGGEIPSLILGRRIDKARERARFYRDIFGPDRFY 173

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ H   ++ R    +V+L+   ++PLVATN+  +L +E  EAH+VL+ +  +  +S 
Sbjct: 174  LELQDHGLSEQKRVNKALVELSKELDIPLVATNDVHYLLKEHAEAHEVLLCIGTNKKLSD 233

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            +DR R  T + YLK+  EM  +F  +PEALENTV IA RC+F +    P+LP +   E  
Sbjct: 234  QDRMRFETQEFYLKSPEEMARLFEGIPEALENTVRIAERCAFEIPFPGPLLPEYHIPEGF 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D     E  LR+    GL+ R  Q         ++ R+R D EL++I +M F+GYFLIV 
Sbjct: 294  D---SPEAYLRHLTYEGLKKRYHQ-------ITREIRERADLELSIIIQMGFTGYFLIVW 343

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF+ +AK+  IPVGPGRGSGAGS+ AYAL IT+IDPL++ LLFERFLNP+R+SMPDFDID
Sbjct: 344  DFVHFAKEQGIPVGPGRGSGAGSIVAYALGITNIDPLKYGLLFERFLNPERISMPDFDID 403

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC  RR+EVI YV  KYG +RVAQIITFG+L+ KA ++DV R L +P+++ + L KL+ +
Sbjct: 404  FCYARREEVIDYVTRKYGKDRVAQIITFGTLKPKAVIKDVARVLGIPFAEANELTKLMGD 463

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
              +     +AI  + R       D +  RL +I   L+GL RHASTHAAGIVIG   L+ 
Sbjct: 464  ASSVE---EAIQREPRLARLAEEDETYTRLFQIGSVLQGLSRHASTHAAGIVIGREALTN 520

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
             VP+YRD ++    TQ++M+ +E  GL+K DFLGLKTLTL+  + + +       D   I
Sbjct: 521  YVPLYRDPKTGDISTQYSMEHLEDCGLVKMDFLGLKTLTLITHTEELVRTHTPDFDTERI 580

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD +T+ LL    +  +FQ ES GM+  L   +P+ IE++IAL +LYRPGP+  I  +
Sbjct: 581  PEDDAQTFQLLAEGKSTCVFQFESEGMQNILRRAKPESIEELIALNALYRPGPMQFIDQF 640

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K G+ KI   HP ++P+LKET GVI+YQEQVMQIAQ ++GY+L  AD+LRRAMGKK 
Sbjct: 641  IEAKQGRRKITYPHPDLEPILKETYGVIVYQEQVMQIAQKIAGYTLGGADILRRAMGKKK 700

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E M K+KE+FI GA   G S+  A  +FELL  FA YGFNKSHAAAY+V++Y+TA++K 
Sbjct: 701  PEVMAKEKEKFIKGAVAQGYSRQFAEELFELLIPFAGYGFNKSHAAAYSVLAYKTAYLKA 760

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP EF+AA++T E+ N +K+ ++  + R   I+++PP +N     F V D +I Y L  
Sbjct: 761  HYPAEFMAANLTNEIGNPDKLAQYIGETRAMGIEVLPPDINASERYFTVRDGKIVYGLVG 820

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IK VGT     I+    + PF S  DF  RVD + +NR+V+E+ + AG  D    +R +L
Sbjct: 821  IKNVGTAAVEEILGKRKEGPFTSFIDFLFRVDLRTVNRKVIETCIQAGVFDSLHPNRAEL 880

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            + +L+ +  +   +++ +      +F   +    ++         ++  +   E+ +LGF
Sbjct: 881  MHNLEALLAHVNRIKEQQEASQGFLFEETETQIREEFQFTPVEDWDTMEKLRYERELLGF 940

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            YFS HPLD  + I  K           T      +L  ++ + ++  T+KG+R+ + T  
Sbjct: 941  YFSSHPLDHLREIWEKGVNLDLSHPERTDPSRTYQLMGVLKTVREITTQKGNRMAFGTIE 1000

Query: 1022 EPAKEYEANFFP 1033
            +     EA FFP
Sbjct: 1001 DYRGSIEAVFFP 1012


>gi|260775271|ref|ZP_05884168.1| DNA polymerase III alpha subunit [Vibrio coralliilyticus ATCC
            BAA-450]
 gi|260608452|gb|EEX34617.1| DNA polymerase III alpha subunit [Vibrio coralliilyticus ATCC
            BAA-450]
          Length = 1159

 Score = 1112 bits (2876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1046 (39%), Positives = 610/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A   G
Sbjct: 2    SDPKFIHLKVHSDFSMVDGLSKVPPLVKKVAEMGMPAMALTDFTNLCGLVKFYGTAHGCG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG    +          Q +     +  + +L +  EGY+ L  L+S+ YL    +
Sbjct: 62   VKPIIGADFAM----------QSEEFGEELTKLTVLAADNEGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+ + GLI+L+G  SG I +A    + +VA+     + + F DR ++ L
Sbjct: 112  HQPVIDKQWLAEL-SAGLIVLSGAKSGEIGKALLKGNHKVAQNCADFYHQHFADRFFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        ++ A   +LP+VATN+ + L E  +EAH++ +A+     +    R
Sbjct: 171  TRTGRADEETYLHFALEFAEKEQLPVVATNDVVILDETTFEAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +   YL++  EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSAQQYLRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             EE   L  K+  GLE RL         +     +Y +RL  EL VI  M F GYFLIV 
Sbjct: 286  MEETEFLVKKSEEGLEERLEFLFPDEEERAKRRPEYDERLKVELEVINNMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +    E   AD  V  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFKAEPALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  +      
Sbjct: 525  FAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKDPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIESIPLDDAASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRATFEDGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N     F 
Sbjct: 765  ALVSYQTLWLKMHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLYRFN 824

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  +  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L++
Sbjct: 825  VDENGAIVYGIGAIKGVGEGPIEAILEARNKGGHFKDLFDFCARIDLKKVNKRVIEKLIY 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ SL++  K A    +       ++F    +     +    K    
Sbjct: 885  AGALDRLGPHRAAMMASLNDAVKAASQYHQAEAFGQSDLFGVLTEAPEEVEHKYTKVPAW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ + 
Sbjct: 945  PEKVWLEGERDTLGLYLTGHPINAYIKELGKYTSCRLKDATPTRRDQSVTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|317493173|ref|ZP_07951596.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918833|gb|EFV40169.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 1160

 Score = 1112 bits (2876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1045 (39%), Positives = 615/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G   +  ++ K+AA   PA AITD  N+   ++F   A  AGI+
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKVGPLVKKVAALGMPAFAITDHTNMCGLVKFYGSAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG  + +          + +     +  + +L +   GYQ L  L+S  Y    G   
Sbjct: 64   PIIGADVFV----------KSELLGDELSHLTILAANNTGYQNLTLLISHAYQRGYGADG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+GG  G + +     + Q+A + +  +++ F D  Y+ L R
Sbjct: 114  PVIDRDWLVEY-REGLILLSGGRQGDVGKMLLRGNQQLAHECVDFYQQYFADSYYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA   ELP+VATN+  FL   D++AH++ +A+     +    RP 
Sbjct: 173  TGRPDEESYLHFAVALAEERELPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPKRPK 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   Y+++  EM  +F+D+PEALEN+VEIA+RC+  +++    LP+F   E       
Sbjct: 233  NYSAQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPTGEM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVAKSKEGLEERLEFLFPDPEVRAKRRPEYDERLDVELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P +P
Sbjct: 408  MEKRDRVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPEP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 527  PLYCDSEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKAGEDPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEVSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA + GI   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFKEGAERMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGQYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I++A  +   F  L D C+R D+KKLNRR+LE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIDARNEGGHFKELFDLCARTDTKKLNRRMLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL++  K A    K       ++F    +     + +    +   +
Sbjct: 887  AFDRLGPHRAALMNSLNDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEKSYSSVAPWPA 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +VV+ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVVAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 TTKRGNRIGVCTLDDRSGRLEVMLF 1031


>gi|260432607|ref|ZP_05786578.1| DNA polymerase III subunit alpha [Silicibacter lacuscaerulensis
            ITI-1157]
 gi|260416435|gb|EEX09694.1| DNA polymerase III subunit alpha [Silicibacter lacuscaerulensis
            ITI-1157]
          Length = 1166

 Score = 1111 bits (2875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 513/1057 (48%), Positives = 696/1057 (65%), Gaps = 47/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP F+HL+VH+ YSLLEGA+ L  +    A+   PA+A+TDTNN+F ALEFS  A  
Sbjct: 1    MSSSPRFIHLRVHTEYSLLEGAVRLKKLPGLCASMDMPAVAVTDTNNMFCALEFSVTASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPIIGCQ+D+           G  P P  P +VLL  +  GY+ L++L S +Y+ D+
Sbjct: 61   AGIQPIIGCQVDLSY----VTAQPGDKPTPPAP-VVLLAQSETGYENLMKLSSCLYV-DK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q  ++ L  LQ   + GLI LTGG  GP+ R         AE  +     +F DRLY+
Sbjct: 115  GGQLPQVTLDELQR-HSAGLICLTGGPDGPVGRLLQQGQRPAAEALVDRLAAMFPDRLYI 173

Query: 185  NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G D      R  E   V++AY   LPLVATN+  F + + YEAHD L+ +A   
Sbjct: 174  ELQRHPGEDGQPEAERLTERGHVEMAYAKNLPLVATNDVYFPTSDMYEAHDALICIAEGA 233

Query: 239  VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K+  EM ++F+DLPEA+ENTVEIARRC+F+     PILP+F +
Sbjct: 234  YVDQQEGRRRLTAQHYFKSPQEMATLFADLPEAIENTVEIARRCAFMAYKRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E +        ELR +A  GL+ RLA   I      ++Y++RLDFEL +I  M F GYF
Sbjct: 294  DEVE--------ELRRQANEGLQKRLA--VIPHAVSPEEYQKRLDFELGIIESMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK++NIPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKEHNIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIRYVQQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+ +A+ D+ R RE    +  VDRLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALKDEPRLREEARNEEVVDRLLTYGQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
            RPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G   
Sbjct: 524  RPLDELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLIRKSGRDL 583

Query: 596  -----------------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                              +++ IP DD  TY L +   T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  HIAADGTQLYDPPEGAVNEINAIPLDDPATYKLYSAAKTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPTYCEVKNGQRQIQSVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKIKE MD ++ +F +GA+ NG+    A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEAGAAANGVDAKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   +K+  + ++ R+   +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLGLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            PP VN     F V D ++ Y+L A+K VG      +++   DKPF +L DF  RVD KK+
Sbjct: 824  PPCVNRSQATFDVVDGQLVYALGALKNVGVEAMNLVVQGRGDKPFVNLFDFARRVDLKKV 883

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE +  AGA D    +R ++ +SL+ + +Y+  + + + +   ++F  E G    +
Sbjct: 884  GKRPLEMMARAGAFDQLDKNRRRVFESLEQLVQYSAAIHEQKNSNQVSLFG-EAGDDLPE 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--I 995
              L K      + R   E + +GFY SGHPLD Y P L++  +   +E     R      
Sbjct: 943  PRLSKSPDWLPAERLSEEFKAIGFYLSGHPLDDYLPALKRKQVMTLDEVTEKARSGPFVA 1002

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++A +V  +Q++K+ KG+R  +   S+P   YE   F
Sbjct: 1003 KMAGVVAGRQERKSAKGNRFAFAQLSDPTGAYEVTLF 1039


>gi|59712554|ref|YP_205330.1| DNA polymerase III subunit alpha [Vibrio fischeri ES114]
 gi|59480655|gb|AAW86442.1| DNA polymerase III alpha subunit [Vibrio fischeri ES114]
          Length = 1159

 Score = 1111 bits (2874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1046 (39%), Positives = 610/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+++G   +  ++ K+     PA+A+TD  NL   +++   A  AG
Sbjct: 2    SEPKFVHLRVHSDFSMVDGLSKVPPLVKKVGELGMPAMALTDFTNLCGLVKYYFAAHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG               Q +     + ++ +L    EGY+ L  L+S  Y     +
Sbjct: 62   VKPIIGA----------DFKVQSQEFGNELFNLTVLAKNNEGYKNLTLLISEAYQRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             +  +   WL     EGLI+L+GG SG + +A    + ++  + +  ++  F +  Y+ L
Sbjct: 112  HTPVMDKEWLVN-HKEGLILLSGGKSGDVGKALLKGNKELVNECVEFYQMHFPEHYYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+  +D++AH++ +A+     +    R
Sbjct: 171  TRTGRADEESYLHFAVELAEKENLPVVATNDVRFIKADDFDAHEIRVAIHDGFTLEDPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   YL++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKLYSDQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + E+ L  K+  GLE RLA        +     +Y  RL  EL+VI +M F GYFLIV 
Sbjct: 286  MKIEDFLVKKSQEGLERRLAFLFPDEKVRLERRPEYDDRLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID
Sbjct: 346  EFIQWSKDNAIPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDID 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P+
Sbjct: 406  FCMDKRDQVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPS 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPELYNADEEVKALIDMCRILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPLYCDADGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  I  +D  +++LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIESISLEDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  +   L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 645  SGMVDNFIDRKHGREEVSYPDATWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRGTFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN +KI     +  +  + ++PP VN+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTDKIIGLVDECFRMKLTVLPPDVNSGLYRFN 824

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V     I Y + AIKGVG     +I+EA      F  L DFC+R+D+KK N+RV+E L+ 
Sbjct: 825  VDEKGAIVYGIGAIKGVGEGPIENIIEARNKGGHFRDLFDFCARIDTKKTNKRVVEKLIR 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  L+ SLD+  K A    +  +    ++F    +     +         
Sbjct: 885  AGALDRLGPHRAALMASLDDAMKAAGQHHQAESFGQSDMFGVLTQAPEEVEQAYIHVPKW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L +       ++  T R   + +A +V++ + 
Sbjct: 945  PEKVWLEGERETLGLYLTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|145300046|ref|YP_001142887.1| DNA polymerase III, alpha subunit [Aeromonas salmonicida subsp.
            salmonicida A449]
 gi|142852818|gb|ABO91139.1| DNA polymerase III, alpha subunit [Aeromonas salmonicida subsp.
            salmonicida A449]
          Length = 1161

 Score = 1111 bits (2874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1044 (41%), Positives = 613/1044 (58%), Gaps = 37/1044 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +N I+   AA+  PA+A+TD  N+   + F   A   GI+
Sbjct: 6    PRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHGKGIK 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G    +          Q          + LL    +GYQ +  L+SR Y     +  
Sbjct: 66   PIVGADFWV----------QSSELGDEQFRLTLLAMDNDGYQNITLLISRGYQRGHVQGR 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   +G+I+L+GG  G + +     + Q+ E  L  ++  F D  Y+ L R
Sbjct: 116  PVIDKEWLTD-HAKGVIVLSGGREGDVGKFLLKGNRQMTESCLAFYQTHFPDAYYLELLR 174

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D        V +A   ELP+VATN  +FL+ ED++AH++ +A+     +  K RPR
Sbjct: 175  TGRPDEEVYLHMAVAIATEFELPVVATNEVVFLNAEDFDAHEIRVAIHDGYTLMDKRRPR 234

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL+++ EM  +F+D+PEALENTVEIA+RC+  +++    LP F   +       
Sbjct: 235  RYSPQQYLRSQEEMAELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPTGDM-----T 289

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 290  TEDFLVAKSKEGLEERLAFLFPDPAVRAVKRGEYDERLEIELKVINQMGFPGYFLIVMEF 349

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 350  IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 409

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRRDEVI +V + YG + V+QIITFGS+ AKA +RDVGR L   Y  VDR+ KLIP DP
Sbjct: 410  MDRRDEVIEHVSDMYGRDAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDP 469

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  E    D  V  L++++++LEG+ R+A  HA G+VI    ++   
Sbjct: 470  GMTL-AKAFEAELKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFA 528

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        VD+
Sbjct: 529  PLYCDDSGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDI 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP  D +++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 589  AAIPIHDKKSFDLLQRFETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 648

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   +  RK+GKE I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 649  MVDNFIERKHGKEAISYPDEKWQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGAD 708

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA KNGI   +AV IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 709  MLRRAMGKKNPAEMAKQRSGFEEGAVKNGIDGELAVKIFDLVEKFAGYGFNKSHSAAYAL 768

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQT W+KTH+P EF+AA MT +MDN +KI     + ++  + ++PP VNT    F V 
Sbjct: 769  VSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVTLVDECQRMGLTVIPPDVNTGRYRFSVN 828

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  I Y + A+KGVG      I+ A   D PF  L DFC+RVD KK+N+RV+E L+ +G
Sbjct: 829  EDGHIVYGIGAVKGVGEGPIDAILSARDQDGPFRDLFDFCNRVDIKKINKRVMEKLILSG 888

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948
            A+D  G  R  L+ +L+   + A+   K +     ++F        D K           
Sbjct: 889  AMDRLGPHRAALMATLEEAMRAAEQHAKAQAVGQVDMFGVLTQEIDDVKKAFANVPHWPD 948

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             V  E E+  LG Y +GHP++ Y   LR+       +   T R      A +V++ +   
Sbjct: 949  KVWLEGERETLGLYLTGHPINQYSGELRRYTSGRLCDLHPTSRDTVTTAAGLVIAARSMV 1008

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G+++G  T  + +   +   F
Sbjct: 1009 TKRGNKMGIFTLDDRSGRLDVTLF 1032


>gi|291616361|ref|YP_003519103.1| DnaE [Pantoea ananatis LMG 20103]
 gi|291151391|gb|ADD75975.1| DnaE [Pantoea ananatis LMG 20103]
          Length = 1160

 Score = 1111 bits (2874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1045 (40%), Positives = 619/1045 (59%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G      ++ K AA   PAIAITD  NL   ++F   A  AG++
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGSAHGAGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   ++  +               +  I +L +   GYQ L  L+SR Y    G   
Sbjct: 64   PIIGADFNVASE----------LMGDELTQITVLAANNTGYQNLTLLISRAYQRGYGIAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S +    L  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLAEL-QEGLILLSGGRRGDVGRSLLRGNSALVSDCLAFYQQHFADRYFLELVR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V+LA    +P+VATN   F++EED++AH++ +A+     +    RP 
Sbjct: 173  TGRPDEESYLHAAVELAIAEGIPVVATNEVCFINEEDFDAHEIRVAIHDGYTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEALEN+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  HYSPQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA        +     +Y +RL+ ELNVI +M F GYFLIV +F
Sbjct: 288  TEDFLVMKSREGLEERLAMLFPDEAVRAEKRPEYDERLEVELNVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        +D+
Sbjct: 527  PLYCDENGQYPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLPPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  ATIPLEDKKSFDMLQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA   GI   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFKDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D     Y + AIKGVG      I++A  +   F  L D C+R D+KK+NRRV+E L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948
            A D  G  R  L+ +L++  K A    K       ++F          + +    +    
Sbjct: 887  AFDRLGPHRAALMSALNDALKAADQHAKAEAIGQADMFGVLADEPEQVEQSYASVTPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V+ + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +  
Sbjct: 947  QVQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKITVAAGLVIAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|327392812|dbj|BAK10234.1| DNA polymerase III alpha subunit DnaE [Pantoea ananatis AJ13355]
          Length = 1160

 Score = 1110 bits (2872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1045 (40%), Positives = 619/1045 (59%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G      ++ K AA   PAIAITD  NL   ++F   A  AG++
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHGAGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   ++  +               +  I +L +   GYQ L  L+SR Y    G   
Sbjct: 64   PIIGADFNVASE----------LMGDELTQITVLAANNTGYQNLTLLISRAYQRGYGIAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    +S +    L  +++ F DR ++ L R
Sbjct: 114  PIIDRDWLAEL-QEGLILLSGGRRGDVGRSLLRGNSALVSDCLAFYQQHFADRYFLELVR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V+LA    +P+VATN   F++EED++AH++ +A+     +    RP 
Sbjct: 173  TGRPDEESYLHAAVELAIAEGIPVVATNEVCFINEEDFDAHEIRVAIHDGYTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEALEN+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  HYSPQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA        +     +Y +RL+ ELNVI +M F GYFLIV +F
Sbjct: 288  TEDFLVMKSREGLEERLAMLFPDEAVRAEKRPEYDERLEVELNVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIEHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        +D+
Sbjct: 527  PLYCDENGQYPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLPPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  ATIPLEDKKSFDMLQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA   GI   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFKDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D     Y + AIKGVG      I++A  +   F  L D C+R D+KK+NRRV+E L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948
            A D  G  R  L+ +L++  K A    K       ++F          + +    +    
Sbjct: 887  AFDRLGPHRAALMSALNDALKAADQHAKAEAIGQADMFGVLADEPEQVEQSYASVTPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V+ + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +  
Sbjct: 947  QVQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKITVAAGLVIAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|78357239|ref|YP_388688.1| DNA polymerase III subunit alpha [Desulfovibrio desulfuricans subsp.
            desulfuricans str. G20]
 gi|78219644|gb|ABB38993.1| DNA polymerase III, alpha subunit [Desulfovibrio desulfuricans subsp.
            desulfuricans str. G20]
          Length = 1165

 Score = 1110 bits (2872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1037 (40%), Positives = 615/1037 (59%), Gaps = 23/1037 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL  H+ YSLL+GA+ L ++ +K       A+AITD  N++ A+ F Q A   G++
Sbjct: 2    PQFVHLHCHTEYSLLDGAIRLKDLCEKAKEFDMSAVAITDHGNMYGAVYFYQMAQKMGLK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC++ +   D+   T            +VLL     GY  L +LV+R +        
Sbjct: 62   PIIGCEVYVAHGDHTDKTG---DMAKKRYHLVLLAQNRTGYHNLAKLVTRGFTEG-FHYK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L++  +EG+I L+   +G I RA        A +    + +++ DR Y+ +Q 
Sbjct: 118  PRVSKDLLRQY-SEGIIALSACLAGEIPRALLNEGMDRAIELAREYAEIYPDRFYLEVQS 176

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++     ++++LA    LPLVATN+  +L + D EAHD L+ +     V+ + R R
Sbjct: 177  NGLKEQDELNDKLIELAGITGLPLVATNDCHYLEKTDVEAHDTLLCIQTGAKVTDERRMR 236

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + Y K+  EM + F+ +PEA+ENTV+IA +    L +     P +   E   +   
Sbjct: 237  FETTELYYKSPDEMAAAFAHVPEAIENTVKIAGQIDVTLDLGNYYFPNYELPEGMTL--- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+E R  +  GL+ RL             Y QRL+ EL+VI  M F GYFLIV DFI W
Sbjct: 294  -EDEFRKLSHEGLQKRLEILPYRDQIDEPAYWQRLEKELDVICSMGFPGYFLIVQDFINW 352

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N IPVGPGRGS AGS+ A+AL IT++DP+ ++LLFERFLN +R+SMPD D+DFC+ R
Sbjct: 353  AKDNKIPVGPGRGSAAGSIVAWALKITNLDPIPYNLLFERFLNNERVSMPDIDVDFCERR 412

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI+YV  KYG + VAQI TFG ++AKA +RDV RAL + +   DR+ KLIP D    
Sbjct: 413  RGEVIQYVGRKYGEDSVAQITTFGKMKAKAVVRDVARALGLSFQDGDRIAKLIPEDLKMT 472

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   +     DP + +LL+IS +LEGL RHASTHAAG+VI D+P+ + +P+Y
Sbjct: 473  IK-KALDMEPDLKTLYTNDPQIRKLLDISMRLEGLSRHASTHAAGVVISDKPMFEYLPLY 531

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
            RD +    VTQF+MK +EK GL+KFDFLGL+T+TL+Q +LD +A Q     DL  +  +D
Sbjct: 532  RDKKGG-IVTQFDMKIVEKVGLVKFDFLGLRTMTLVQDALDLIAMQGLTPPDLDTMSLED 590

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
             ETY L +   T G+FQ+ESSGMRQ L  ++P C +D+IA+++LYRPGP+ + +V  +  
Sbjct: 591  KETYELYSRGETDGVFQVESSGMRQYLRMLRPSCFDDVIAMLALYRPGPLGSGMVDEFIK 650

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+  +      +   L++T GVI+YQEQVMQIAQ+++ Y+L  AD+LRRAMGKK  E
Sbjct: 651  RKHGEVAVTYPLESLKDCLRDTYGVIVYQEQVMQIAQIVANYTLGGADLLRRAMGKKNAE 710

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M +++ +F  GA +N + +  A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K HY
Sbjct: 711  AMAEERIKFTKGAKENNVPEAKATEIFDLMEKFAEYGFNKSHSAAYALISYYTAYLKVHY 770

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+AA MT EM+N EK+ K+    +   ++++ P+V     +F V D ++ Y L  IK
Sbjct: 771  PVEFMAALMTSEMNNQEKVLKYVACCKDMGVEVLAPNVQISRREFSVLDGKVTYGLGGIK 830

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG    R I+ A   D PF S+ D C RV+ +K+ +RVLE+L+ +GA DC G +R  ++
Sbjct: 831  NVGDEAIREIVRAREEDGPFQSMLDLCMRVNLRKVTKRVLENLIKSGACDCLGCTRQGMV 890

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL------EKFSVENSSVRFENEQ 956
              LD +   AQ   K + +   ++F+  +        L      +     +   +   E+
Sbjct: 891  AGLDTVVARAQKKAKEKASNQISMFSVMEQEPQTCPGLGFDCPEQSMEEWDDEEKLRKEK 950

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LGFY S HPL  Y+  + ++ +   E+        + + A +V S ++  T+KG R+ 
Sbjct: 951  EALGFYLSSHPLQPYRKEIFRLRLTPLEDCREMGPEQSFKSAVLVTSIKEILTKKGHRMA 1010

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +    +     E  FFP
Sbjct: 1011 FCQVEDLTASGECIFFP 1027


>gi|50119986|ref|YP_049153.1| DNA polymerase III subunit alpha [Pectobacterium atrosepticum
            SCRI1043]
 gi|49610512|emb|CAG73957.1| DNA polymerase III alpha subunit [Pectobacterium atrosepticum
            SCRI1043]
          Length = 1160

 Score = 1110 bits (2871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1045 (40%), Positives = 605/1045 (57%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ K AA   PA+AITD  NL   ++F   A  AG++
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKVGPLVKKTAALGMPALAITDFTNLCGLVKFYGGAHGAGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          +       +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 64   PIIGADFYV----------ESDELGDELAHLTVLAMDNEGYQNLTLLISHAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+GG  G + R     +   AE+ L  +++ F  R Y+ L R
Sbjct: 114  PTIDRDWLIE-HQEGLILLSGGRRGDVGRFLLRGNQAQAEQCLAFYQEHFPQRYYLELTR 172

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
              R  +       V+LA  + LP+VATN   F+S +D++AH++ +A+     +    RP 
Sbjct: 173  TSRPDEESYIHAAVELATKYGLPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E       
Sbjct: 233  HYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQFPTGEM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              + L   +  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TADFLVQCSKKGLEDRLESLFPDPEVRVARRPEYDERLDIELGVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDMVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 527  PLYCDSEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKLGQEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP  D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  ATIPLGDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   G++  +AV IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKNPVEMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA      F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F          + +         
Sbjct: 887  AFDRLGPHRAALMNSLADALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVPPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP+  Y   + +       ++   T RG       +V++ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPITQYIKEIERYAAGVRLKDMHPTDRGKMTTAVGLVLAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 ITKRGNRIGICTLDDRSGRLEIMLF 1031


>gi|209695836|ref|YP_002263766.1| DNA polymerase III subunit alpha [Aliivibrio salmonicida LFI1238]
 gi|208009789|emb|CAQ80096.1| DNA polymerase III, alpha chain [Aliivibrio salmonicida LFI1238]
          Length = 1159

 Score = 1110 bits (2870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1042 (40%), Positives = 607/1042 (58%), Gaps = 37/1042 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS +SL++G   +  ++ K+A    PA+ +TD  NL   +++   A  AGI+PI
Sbjct: 6    FVHLRVHSDFSLIDGLSKVPPLVKKMAELNMPAMGLTDFTNLCGLVKYYFAAHGAGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG               Q       + ++ +L    EGY+ L  L+S+ YL    + +  
Sbjct: 66   IGA----------DFKVQSTEFGNELFNLTVLAKNNEGYKNLTLLISKAYLRGHVQHTPV 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   WL E   EGLI+L+G  +G + +A    + ++  + +  +K  F D  Y+ L R  
Sbjct: 116  MDKEWLIE-HKEGLIILSGAKNGDVGKALLKGNQELVNECVDFYKTYFPDHYYLELIRTG 174

Query: 191  GYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
              D        V LA    LP+VATN+  F+  +D++AH++ +A+     +    RP   
Sbjct: 175  RVDEDSYLHFAVDLAEKEGLPVVATNDVCFIKADDFDAHEIRVAIHDGFTLEDPRRPKNY 234

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   YL+   EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       + E
Sbjct: 235  SSQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPTE-----GMKIE 289

Query: 309  NELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            + L  K+  GLE RLA        +     +Y +RL  EL+VI +M F GYFLIV +FIQ
Sbjct: 290  DFLVKKSQEGLERRLAFLFPDEKVRLERRPEYDERLQIELDVINQMGFPGYFLIVMEFIQ 349

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            W+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDFC D
Sbjct: 350  WSKDNLIPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMD 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            +RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDRL KLIP DP  
Sbjct: 410  KRDKVIEHVAEIYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKLIPTDPGM 469

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A   + +  E   AD  V  L+++ + LEG  R+A  HA G+VI    ++   P+
Sbjct: 470  TL-AKAFEAEPQLPELYNADEEVRALIDMCRILEGCTRNAGKHAGGVVISPTTITDFSPL 528

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSL 600
            Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K       +  
Sbjct: 529  YCDADGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRREKEGKEAVRIES 588

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV- 659
            IP DD  ++ LL    T  +FQLES GM+  ++ +QPD  EDIIALV+L+RPGP+ + + 
Sbjct: 589  IPLDDQASFKLLQNSETTAVFQLESRGMKDLIKRLQPDSFEDIIALVALFRPGPLQSGMV 648

Query: 660  -VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              + +RK+G+E++        H  +   L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+L
Sbjct: 649  DNFIDRKHGREEVSYPDVNWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGGADML 708

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+AAYA++S
Sbjct: 709  RRAMGKKKPEEMAKQRGTFKDGAIANGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVS 768

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GD 832
            YQT W+KTHYP EF+AA MT +MDN +KI     +  +  ++++PP VN     F V  D
Sbjct: 769  YQTLWLKTHYPAEFMAAVMTADMDNTDKIIGLVDECFRMKLKVLPPDVNAGLYRFNVDED 828

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I Y + AIKGVG     +I+EA      F  L DFCSR+D+KK N+R++E L+ +GAL
Sbjct: 829  GAIVYGIGAIKGVGEGPIENIIEARNKGGYFRDLFDFCSRIDTKKTNKRIVEKLIRSGAL 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSV 950
            D  G  R  L+ S+++  K A    +  +    ++F    +     +            V
Sbjct: 889  DRLGPHRAALMASVEDAMKAAGQHHQAESFGQSDMFGVLTQAPEEVEQAYTHVPRWPEKV 948

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
              E E+  LG Y +GHP++ Y   L +       ++  T R   + +A +V++ +   T+
Sbjct: 949  WLEGERETLGLYLTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVAGLVIAARVMTTK 1008

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +GSRIG +T  + +   E   F
Sbjct: 1009 RGSRIGLMTLDDRSGRMEVMLF 1030


>gi|304414199|ref|ZP_07395567.1| DNA polymerase III alpha subunit [Candidatus Regiella insecticola
            LSR1]
 gi|304283413|gb|EFL91809.1| DNA polymerase III alpha subunit [Candidatus Regiella insecticola
            LSR1]
          Length = 1160

 Score = 1110 bits (2870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1045 (40%), Positives = 615/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G    + ++ K A+   PA+AITD  NL   ++F   A AAGI+
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTSALVKKAASLGMPALAITDFTNLCGLIKFYSSAQAAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q K     +  + +L    +GYQ L  L+S+ Y    G   
Sbjct: 64   PIIGADFYL----------QSKLLDDELAQLTILARNQQGYQNLTLLISKAYQRGYGASG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL    +EGLI+L+GG SG + +     +     + L  +++ F D  Y+ L R
Sbjct: 114  PLIDRDWLI-THSEGLILLSGGRSGDVGKFMLRGNQTQMLECLAFYQQYFADNYYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        + LA  H++P+VATN+  F+   D+EAH++ +A+     ++   RP 
Sbjct: 173  TGRPDEENYLRGAIALASQHDIPVVATNDVRFIDTSDFEAHEIRVAIHDGATLADTKRPK 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  +++N  EM ++FSD+PEAL N++EIA+RC+  +++    LP+F           
Sbjct: 233  NYSPQQFMRNEQEMCALFSDIPEALTNSIEIAKRCNLSIRLGEYFLPQFPTGAM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+    KA  GLE RLA        K      Y +RL+ E+ VI +M F+GYFLIV +F
Sbjct: 288  TEDFFAEKAQLGLEERLAFLFPDVNTKKQRRAAYDERLNVEIKVINQMGFAGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFDIDFC
Sbjct: 348  IQWSKDNGIPVGPGRGSGAGSLVAYALKITDIDPLAFDLLFERFLNPERISMPDFDIDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V N YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP D 
Sbjct: 408  MEKRDQVIEHVANIYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLIPLDV 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLAELYQADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFS 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +        +D+
Sbjct: 527  PLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWTLVMINAQQASKGLPSIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ LL    T  +FQLES GM+  ++ ++PDC EDIIALV+L+RPGP+ + 
Sbjct: 587  TTIPLDDKKSFALLQRAETTAVFQLESKGMKDLIKRLKPDCFEDIIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E +        H L+ P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD
Sbjct: 647  MVDNFIDRKHGREALSYPDIQWQHELLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F +GA + GI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKDPVEMAKQRSIFENGAKQQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+A  MT +MDN +K+     +  +  ++++ P +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAGVMTADMDNTDKLVGMVDECIRMGLKVLLPDINSGSYHFNVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+ A  A   F  L D C+R ++KKLNRRVLE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPITAILNARQAGGHFKDLFDLCARTETKKLNRRVLEKLILSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948
            A D  G  R  L+ SL+   K A    K      +++F    G+    + +    +    
Sbjct: 887  AFDRLGPHRASLMHSLETALKAADQHAKAEAIGQKDMFGVLTGSPEQVEHSYANIAPWQE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             +  E E+  LG Y +GHP+  Y   L +  G    ++   T RG    +A +V++ +  
Sbjct: 947  QIVLEGERETLGLYLTGHPITQYLKELERYSGGIRLKDLHVTERGKTTTVAGLVIAARVI 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|206901842|ref|YP_002251105.1| DNA polymerase III alpha subunit [Dictyoglomus thermophilum H-6-12]
 gi|206740945|gb|ACI20003.1| DNA polymerase III alpha subunit [Dictyoglomus thermophilum H-6-12]
          Length = 1127

 Score = 1109 bits (2869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/1026 (39%), Positives = 630/1026 (61%), Gaps = 27/1026 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+GA  ++ ++D+      PA+AITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHVHTEYSLLDGACRIDELIDQALEFNMPAVAITDHGVMYGVIDFYKNAKEKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +            K     +  ++LL    EGY+ LI++VS  +L        
Sbjct: 62   IIGCEVYVAPGSRF-----DKKQRTDLYHLILLAKDFEGYKNLIKIVSLSFLEG-FYYKP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L+E  ++G+I L+   +G I      N+ + A+  +  +  +FG+  Y+ LQ +
Sbjct: 116  RVDKELLREY-SKGIIALSSCLAGEIPSYILQNNLEKAKNAIKEYLDIFGEDFYLELQNN 174

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ Y  S +++L+    +PLVATN+  +L +ED E HD+L+ +   + ++ KDR R 
Sbjct: 175  GMEEQEYVNSYLIKLSRELNVPLVATNDVHYLRKEDAEIHDILLCIQTGSKLNDKDRLRF 234

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + Y K+  EM ++F D+P+A+ENT++IA +C+  + ++  ILP F   E + +    
Sbjct: 235  KTNEFYFKSPEEMKALFKDVPDAIENTLKIAEKCNVEIPLNNVILPVFEVPEGETL---- 290

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++        G + R  +         ++ R+RL +E++VI +M FSGYFLIV DF+ +A
Sbjct: 291  DSYFERLCWEGAKKRFGEDI------PENIRERLSYEISVIKQMGFSGYFLIVQDFVNYA 344

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K   IPVGPGRGS AGS+ +Y L IT+I+P R+ L+FERFLNP+R++MPD DIDFC +RR
Sbjct: 345  KSRGIPVGPGRGSAAGSLVSYVLGITNIEPTRWGLIFERFLNPERVTMPDIDIDFCFERR 404

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI YV+NKYG E VAQIITFG++ A+A++RDVGR L +PY++VDR+ KLIP + +   
Sbjct: 405  EEVIEYVRNKYGKEHVAQIITFGTMAARASVRDVGRVLDVPYNEVDRIAKLIPPNTSIE- 463

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+      R     +P   R++EI++++EG  RHAS HAAGIVI   PL + VP+  
Sbjct: 464  --EALNTSEELRNLVENNPQAKRIIEIAKRIEGNARHASIHAAGIVISKDPLMEYVPLQV 521

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
               +D+ VTQ  M  +E+ GL+K DFLGL+TLT++  ++  + +   +++D++ I   D 
Sbjct: 522  MNGTDV-VTQLPMTNLEELGLLKMDFLGLRTLTVIYDTIKKIKENYGIEIDINNISLSDE 580

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y LL    T+G+FQLES GMR  L  ++P+  ED+IA+++LYRPGP+  +  Y  RK 
Sbjct: 581  KVYELLQKGETIGVFQLESRGMRNLLRDIKPEKFEDLIAVLALYRPGPLGRLESYIKRKR 640

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+EK+  +HP ++P+L ET GVIIYQEQVM+IA  L+G++L +ADVLRRAMGKK  E M+
Sbjct: 641  GEEKVEYMHPALEPILAETYGVIIYQEQVMEIAHRLAGFTLGQADVLRRAMGKKKPEVME 700

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +Q+  F+ GA + GI + +A+ IFE +AKFA+YGFNKSH+AAYA +S+QTA++K +YP E
Sbjct: 701  EQRGIFVKGAVERGIPENVAIEIFEDMAKFAEYGFNKSHSAAYAFVSFQTAYLKAYYPKE 760

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            ++A+ +T   ++  K+ K+  +A++  I+I+PP VN   VDF V    I + L+AIK VG
Sbjct: 761  YMASLLTSVKNSTTKLSKYIAEAKRIGIKILPPDVNESVVDFTVTPQGIRFGLSAIKNVG 820

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
             + A  I+E  +   F S+ DF  R+ SK +N+R LESL+ +GA D FGYSR  LL+++D
Sbjct: 821  ESVAEAIVEERSRGRFKSIFDFIKRLSSKVINKRALESLIKSGAFDSFGYSRRALLENID 880

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             I + AQ V K       ++   E     + I        +     E E+ +LGFY S  
Sbjct: 881  KILESAQ-VMKRAHIGQVSLIDLESLPQEEIIN--NMPEFSIDEILEMEKEMLGFYVSYD 937

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P +  + I  K+     ++ V    G+ + +  ++ + ++   RK  ++ + T  +   E
Sbjct: 938  PQEELRKISEKLFDYTIDDLVEVESGSQVIVPGILKNVREVIDRKNQKMLFATLEDFTGE 997

Query: 1027 YEANFF 1032
             E   F
Sbjct: 998  AEITVF 1003


>gi|238792741|ref|ZP_04636372.1| DNA polymerase III subunit alpha [Yersinia intermedia ATCC 29909]
 gi|238727849|gb|EEQ19372.1| DNA polymerase III subunit alpha [Yersinia intermedia ATCC 29909]
          Length = 1171

 Score = 1109 bits (2868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1045 (39%), Positives = 605/1045 (57%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 74

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 75   PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   EGLI+L+GG  G + +     +    ++ L  +++ F    Y+ L R
Sbjct: 125  PIIDRDWLIK-HKEGLILLSGGRMGDVGKFMLRGNQAQVDQCLEFYQEHFPGSYYLELIR 183

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  F++E D++AH++ +A+     +    RP 
Sbjct: 184  TGRPDEENYLHAAVTLATERGLPVVATNDVRFIAESDFDAHEIRVAIHDGFTLVDPKRPK 243

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E       
Sbjct: 244  NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEM-----S 298

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 299  TEDFLVEKSKQGLEERLEFLFPDPEVRVQKRPEYDERLDIELKVINQMGFPGYFLIVMEF 358

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 359  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 418

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 419  MEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 478

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 479  GMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 537

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  +        +D+
Sbjct: 538  PLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINAKRAKTGLEPIDI 597

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 598  ASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 657

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E +        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD
Sbjct: 658  MVDNFIDRKHGREALSYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 717

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 718  MLRRAMGKKNPAEMAKQRSVFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 777

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 778  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPEINSGLYHFHVN 837

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D     Y + AIKGVG      I+EA  +   F  L D C+RVD+KKLNRR+LE L+ +G
Sbjct: 838  DEGEIVYGIGAIKGVGEAPIEAILEARKEGGHFKDLFDLCARVDTKKLNRRILEKLIMSG 897

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL    K A    K       ++F          + +         
Sbjct: 898  AFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMFGVLADAPEQVEQSYANVPPWQE 957

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             +  + E+  LG Y +GHP+  Y   + +  G +  ++   T RG       +V++ +  
Sbjct: 958  QIVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIAARVM 1017

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1018 VTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|332174819|gb|AEE24073.1| DNA polymerase III, alpha subunit [Glaciecola agarilytica
            4H-3-7+YE-5]
          Length = 1155

 Score = 1109 bits (2868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1039 (40%), Positives = 616/1039 (59%), Gaps = 33/1039 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS YS+L+G   +  ++ ++ +   PA+A+TD  N+   ++F ++A A GI+PI
Sbjct: 6    FVHLRVHSDYSMLDGLNKIKPLISQVKSLNMPAVALTDQMNMCGLVKFYEQAHANGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    +          Q       V  + LL +  +GY+ +  L+S+ YL    +    
Sbjct: 66   IGTDFWV----------QSSALEDHVFRLTLLAANNKGYKNITLLISKAYLRGSVQDKAV 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            I   WL E  +EG+I+L+GG  G +       +  +AEK    +++ F DR Y+ L R  
Sbjct: 116  IDQEWLAE-HSEGVIILSGGRMGDLGVYLTKGNVGLAEKATAFYQEHFPDRFYLELTRTA 174

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     + V+ A  H LP+VATN   F+S +++EAH++ +A+     ++   RP+  
Sbjct: 175  RVGEEDYIHRAVEWAGQHNLPVVATNEVCFISPDNFEAHEIRVAIHDGYTLNDPRRPKLY 234

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   Y+++  EM  +F+D+P+A+ENTVEIA+RC+  + +    LP F   +         
Sbjct: 235  SEQQYMRSSEEMCELFADIPQAIENTVEIAKRCNVSVLLGTYFLPDFPTGDM-----SIA 289

Query: 309  NELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            + L   +  GLE RLA        +     +Y +RL  EL VI +M F GYFLIV +FIQ
Sbjct: 290  DFLVKVSEEGLEKRLAFLFPDEEERLAKRPEYDERLKVELVVINQMGFPGYFLIVMEFIQ 349

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            W+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D
Sbjct: 350  WSKDNGIPVGPGRGSGAGSLVAYALGITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMD 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP  P  
Sbjct: 410  RRDEVIDHVAEMYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPTPGM 469

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++ +A  ++ R  E    D  V  L+++++ LEG+ R+A  HA G+VI    ++   P+
Sbjct: 470  TLT-KAFEEEPRLPELYAYDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPDKITDFAPL 528

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
            Y D     PVTQF+   +E AGL+KFDFLGL+TLT++Q ++D ++  +G+ +D+  IP D
Sbjct: 529  YCDDEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMISSGKGIDIDILAIPMD 588

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
            D +++ LL    T  +FQLES GM+  ++ ++PD  EDIIALV+L+RPGP+ + +   + 
Sbjct: 589  DKKSFKLLQRSETTAVFQLESRGMKDLIKRLRPDSFEDIIALVALFRPGPLQSGMVDNFI 648

Query: 663  NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ +SGYSL  AD+LRRAM
Sbjct: 649  DRKHGREAISYPDATYQHECLKEILEPTYGIILYQEQVMQIAQEMSGYSLGGADLLRRAM 708

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM KQ+E F +GA  N I   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT 
Sbjct: 709  GKKKPEEMAKQRESFETGAKNNNIDPELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 768

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIY 836
            W+KTHYP EF+AA M+ +MDN +KI     + ++  I ++PP VN     F V  + RI 
Sbjct: 769  WLKTHYPAEFMAAVMSADMDNTDKIVTLVDECQRMGITLLPPDVNAGSYKFTVDSEGRIV 828

Query: 837  YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y + AIKGVG      I+EA  + + F  L DFC++VD+K++N+RVLE LV+AGALD  G
Sbjct: 829  YGIGAIKGVGEGPIAAIIEARENHEKFTDLFDFCAKVDTKRINKRVLEKLVYAGALDNLG 888

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFEN 954
              R  ++ +L      A    K  ++   ++F          +    K       V  + 
Sbjct: 889  PHRASIMATLPEAIAAADQHAKAESHGQSDMFGLLTTEPEQVEQAFVKVPPWPEKVWLDG 948

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LG Y +GHP++ Y   +R        +   T +        +V+  +    ++G R
Sbjct: 949  EKDTLGLYLTGHPINQYLQEIRHYCTGRLVDLKPTNKDVVSYAVGLVLGVRVMTNKRGRR 1008

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
             G VT  + +   +  FFP
Sbjct: 1009 WGIVTLDDKSARIDVRFFP 1027


>gi|163801794|ref|ZP_02195691.1| DNA polymerase III subunit alpha [Vibrio sp. AND4]
 gi|159174302|gb|EDP59106.1| DNA polymerase III subunit alpha [Vibrio sp. AND4]
          Length = 1159

 Score = 1109 bits (2868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1046 (40%), Positives = 611/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL+VHS YS+++G   +  ++ K+A    PA+A+TD  NL   +++   A   G
Sbjct: 2    SDPKFIHLRVHSDYSMVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGAAHGNG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG    +          Q       +  + LL +  EGY+ L  L+S+ YL    +
Sbjct: 62   VKPIIGADFKM----------QSDEFGEELTQLTLLAANNEGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL E+ +EGLI+L+G  +G I +A    +  VAE  +  +++ F DR Y+ L
Sbjct: 112  HQPVIDKTWLAEL-SEGLIVLSGAKNGEIGKALLKGNRTVAESCVAFYQEYFPDRFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+ A   +LP+VATN  +F+ EE ++AH++ +A+     +    R
Sbjct: 171  VRTGRPDEETYLHFAVEFANETQLPVVATNEVVFIGEELFDAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P+ YL+   EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSPEQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             EE + L  K+  GLE RL         +     +Y  RL  EL+VI +M F GYFLIV 
Sbjct: 286  MEETDFLVMKSREGLEERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNSIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +    E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFKAEPALPELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        +
Sbjct: 525  FAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPI 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP  D  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  QIESIPLVDAASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTH+P EF+AA MT +MDN EK+     +  +  + ++PP +N     F 
Sbjct: 765  ALVSYQTLWLKTHFPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINAGLYRFN 824

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V     I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L++
Sbjct: 825  VDQSGAIVYGIGAIKGVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIY 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  L+ SL++  K A    +       ++F          +    +    
Sbjct: 885  AGALDRLGPHRAALMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPAW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ + 
Sbjct: 945  PEKVWLEGERETLGLYLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++GSRIG +T  + +   E   F
Sbjct: 1005 MTTKRGSRIGIMTLDDRSGRMEVMLF 1030


>gi|304396659|ref|ZP_07378540.1| DNA polymerase III, alpha subunit [Pantoea sp. aB]
 gi|304356168|gb|EFM20534.1| DNA polymerase III, alpha subunit [Pantoea sp. aB]
          Length = 1160

 Score = 1109 bits (2868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1045 (40%), Positives = 619/1045 (59%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G      ++ K AA   PAIAITD  NL   ++F   A +AGI+
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P+IG   ++  +               +  + +L S+  GYQ L  L+SR Y    G   
Sbjct: 64   PVIGADFNVASE----------LMGDELTQLTVLASSNTGYQNLTLLISRAYQRGYGVDG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    ++ +  + L  +++ F DR Y+ L R
Sbjct: 114  PIIDRDWLIEL-QEGLILLSGGRRGDVGRSLLRGNNALVSQCLSFYQQHFPDRYYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V+LA    +P+VATN   F++ ED++AH++ +A+     +    RP 
Sbjct: 173  TGRQDEESYLHAAVELAIAEGIPVVATNEVCFINAEDFDAHEIRVAIHDGYTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVVKSREGLEERLAFLFPDEAERAEKRPEYDERLEIELTVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +      AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFIAEPQLPAMYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K      D+
Sbjct: 527  PLYCDEHGQFPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  ASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA   GI   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSIFRDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYPFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I++A  +   F  L D C+R D+KK+NRRV+E L+ +G
Sbjct: 827  DAGEIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F    +     + +    +    
Sbjct: 887  AFDRLGPHRAALMSSLSDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYASVTPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V+ + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +  
Sbjct: 947  QVQLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKITVAAGLVIAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|119774291|ref|YP_927031.1| DNA polymerase III subunit alpha [Shewanella amazonensis SB2B]
 gi|119766791|gb|ABL99361.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 1157

 Score = 1109 bits (2868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1045 (40%), Positives = 619/1045 (59%), Gaps = 36/1045 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G   +  IL K  A+   AIA+TD NNL   ++F       G
Sbjct: 2    SQPRFVHLRVHSDFSMTDGLAKVKPILGKAEAEGMAAIALTDQNNLCGLVKFYSTCHDKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG    + +                  ++ +L    EGYQ L +L+S+ YL  Q +
Sbjct: 62   IKPIIGADFWMLVPG----------FEDEFCAVTVLAMDNEGYQNLTQLISQAYLRGQVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V I   WL    + G+++L+G   G + +A    ++  A      ++K F DR ++ L
Sbjct: 112  GRVAIDQEWLLTYNS-GILLLSGAKEGDLGKALIKGNAAQAASLTQFYQKHFPDRYFIEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+ A    LP+VATN  +FLS ED+EAH++ +A+     ++   R
Sbjct: 171  IRTGRADEETYLHMAVKHAAEVGLPVVATNQVVFLSPEDFEAHEIRVAIHDGFTLADNRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   YL++  EM  +FSD+PEA+ENTVEIA+RC+  +++    LP F   E     
Sbjct: 231  PKKYSEQQYLRSEDEMCELFSDIPEAIENTVEIAKRCNVTVRLGEYFLPNFPTGEL---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                + L  ++  GLE RL         +    ++Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -STADFLVERSKEGLEERLEFLFPDPAERAEKRKEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L   Y  VDR+ K+IP 
Sbjct: 406  FCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVVRDVGRVLGHSYGFVDRISKMIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A   +   +EA  AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  EPGMTL-AKAFEVEPGLQEAYDADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FSPLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKLGKPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDSKSFSVLKRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G E+I        H  + P+L+ T G+I+YQEQVMQIAQ L+GY+L  
Sbjct: 645  SGMVDNFIDRKHGHEEISYPDATWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F +G+ KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAGFEAGSVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTH+P EF+AA M+ +MDN +KI     +  +  ++I+PP VN     F 
Sbjct: 765  ALVSYQTLWLKTHFPSEFMAAVMSADMDNTDKIVTLVDECDRMGLKIIPPDVNKGLFKFT 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V ++  I Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+++
Sbjct: 825  VDEDLNIVYGIGAIKGVGEGPVEAILEARKDGPFTDLFDFCARIDLKKLNKRVIEKLIYS 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-ITLEKFSVEN 947
            GALD  G  R  ++ +L    + A    K +     ++F        D+     + +   
Sbjct: 885  GALDSLGPHRASMMATLPEAMQAADQHAKAQATGQHDMFGLLNDDQQDEKQQFVECTPWP 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +  
Sbjct: 945  DKIWLEGERETLGLYLTGHPINQYLKELKNYTSGRLKDIHPTERGKTVKAAGLVVASRVM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GS++G +T  + +   E   F
Sbjct: 1005 LTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|94267210|ref|ZP_01290812.1| DNA polymerase III, alpha subunit [delta proteobacterium MLMS-1]
 gi|93452086|gb|EAT02768.1| DNA polymerase III, alpha subunit [delta proteobacterium MLMS-1]
          Length = 1174

 Score = 1109 bits (2868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1035 (41%), Positives = 618/1035 (59%), Gaps = 17/1035 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YS+L+GA+ L+ +  K       A+AITD   +F ALEF  KA  AGI+P
Sbjct: 3    DFVHLHVHTQYSMLDGAIRLDRLFAKCREYGMEAVAITDHGAMFGALEFYVKAKKAGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  I            K+       ++LL     GYQ L++L +   L        
Sbjct: 63   IIGCEFYIAPDSR--RDKSAKSAGAAAHHLMLLAMDQTGYQNLMKLATIAQLEG-FHYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI L  L     EGLI +T    G +           A        +LF  RLY+ +Q +
Sbjct: 120  RIDLEVLA-AHREGLIAMTACLHGKVPSLLVKGDKAGARAEAKRLHELFPGRLYLEMQEN 178

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +  ++      + +LA   ELPLVATN+  +L  E+ +AH+VL+ +     ++ +DR R 
Sbjct: 179  QIPEQTTVNEGLKELAAELELPLVATNDCHYLDREEAKAHEVLLCIQTGKTMAAQDRFRF 238

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  + K+ +EM + F+  P+AL  T EIA+RC+  L + +   P F     D +    
Sbjct: 239  ATDELFFKSPAEMKAAFAHSPQALAATAEIAQRCNLELDLESHHFPDFPVPTGDTLASLF 298

Query: 308  ENELRN-KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E E R   A    E+R  QG        + YRQRL+ E++VI +M F GYFLIVADFI W
Sbjct: 299  EREARAGLAQRLTEMRDKQGLTVGAELEEQYRQRLEHEIDVINQMGFPGYFLIVADFINW 358

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGSGAGS+ AYA+ ITD+DP+   L+FERFLN +R SMPDFD+DFCQ+R
Sbjct: 359  AKDQQIPVGPGRGSGAGSLVAYAMRITDVDPIPHGLIFERFLNIERKSMPDFDVDFCQER 418

Query: 427  RDEVIRYVQNKYGHE-RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            R EVI YVQ+KYG +  V QI+T+GS++AKA +RDVGRAL M + + DR+ KLIP++   
Sbjct: 419  RGEVIDYVQHKYGGQSHVVQIVTYGSMKAKAVVRDVGRALGMSFGEADRIAKLIPDELNI 478

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +AI  + +F+E    +P V  LL +++ LEGL RH S HAAG+VI  RP+ + +P+
Sbjct: 479  TLD-KAIDKEPKFKELMKREPQVAELLNVAKVLEGLNRHTSIHAAGVVISPRPMVEYLPL 537

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFD 604
             +  + ++ +TQ++MK  E  GLIKFDFLGLKTLT++ ++   +        D++ IP D
Sbjct: 538  CKGPKGEV-LTQYDMKHTEMTGLIKFDFLGLKTLTVIDRACKLIKADLDHEVDIAAIPMD 596

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
            D +T+ LL     LG+FQLESSGMR  L  M+P+   D+IALV+LYRPGP+++ +V  + 
Sbjct: 597  DAKTFDLLCKGDALGVFQLESSGMRSLLMKMKPEQFSDLIALVALYRPGPLESGMVEDFV 656

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            N K+G+         ++P+LKET GVI+YQEQVM+IA +L+GYSL +AD LRRAMGKKI 
Sbjct: 657  NTKHGRMVAKYPLAQLEPILKETYGVIVYQEQVMKIANVLAGYSLGDADNLRRAMGKKIP 716

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E M+ +K +F++G + NGI    A  IF+L+AKFA YGFNKSH+AAYA+I+YQTAW+K H
Sbjct: 717  EVMEAEKGKFMAGCADNGIDPKKAEYIFDLVAKFAGYGFNKSHSAAYALIAYQTAWLKAH 776

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP +F+AA ++ +M N +K+ ++  + R+  I+++PP +N    DF V D+RI + LAA+
Sbjct: 777  YPSQFMAALLSCDMGNTDKVVRYINECREHEIEVLPPDINESFRDFTVIDDRIRFGLAAV 836

Query: 843  KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K VG      I+E    D P+ SL DFC RVD +K+NRRV+ESL+ AGA D  G  R QL
Sbjct: 837  KNVGGAALDSIIEVRETDGPYQSLSDFCGRVDGRKVNRRVIESLIKAGAFDSLGAKRAQL 896

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---ITLEKFSVENSSVRFENEQRV 958
               LD     AQ  +++R +   ++FA      + +   I L + +  +   R   E+  
Sbjct: 897  FAILDQAMDQAQATQRDRQSGQISLFAAMPAEQAAQAQNIELPEIAEWDEKQRLLLEKET 956

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +GFY +GHPLD Y+  L  +      +         +R+  ++   +  +++KG  + ++
Sbjct: 957  VGFYLTGHPLDKYRRELSGVIDTDLHDLADWNEQQPVRVGGLIRHCKPHRSKKGDAMAFL 1016

Query: 1019 TFSEPAKEYEANFFP 1033
            T  +     E   FP
Sbjct: 1017 TLEDTLASAEVVIFP 1031


>gi|325496116|gb|EGC93975.1| DNA polymerase III subunit alpha [Escherichia fergusonii ECD227]
          Length = 1150

 Score = 1108 bits (2867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1037 (40%), Positives = 612/1037 (59%), Gaps = 38/1037 (3%)

Query: 17   HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
            HS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   +
Sbjct: 2    HSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFN 61

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            +          Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL
Sbjct: 62   V----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL 111

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY- 195
             E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D   
Sbjct: 112  IEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 170

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYL 254
                 V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+
Sbjct: 171  YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 230

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
            ++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +
Sbjct: 231  RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKR 285

Query: 315  AVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N 
Sbjct: 286  AKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNG 345

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI
Sbjct: 346  VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 405

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A
Sbjct: 406  EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKA 464

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D   
Sbjct: 465  FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 524

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDH 606
              PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD 
Sbjct: 525  KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
            +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +R
Sbjct: 585  KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 644

Query: 665  KNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            K+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGK
Sbjct: 645  KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 704

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+
Sbjct: 705  KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 764

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YS 838
            K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+    Y 
Sbjct: 765  KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 824

Query: 839  LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  
Sbjct: 825  IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 884

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R  L+ SL +  K A    K       ++F    +     + +          V  + E+
Sbjct: 885  RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGER 944

Query: 957  RVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
              LG Y +GHP++ Y   + +  G    ++   T RG     A +VV+ +   T++G+RI
Sbjct: 945  ETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGNRI 1004

Query: 1016 GWVTFSEPAKEYEANFF 1032
            G  T  + +   E   F
Sbjct: 1005 GICTLDDRSGRLEVMLF 1021


>gi|117921241|ref|YP_870433.1| DNA polymerase III subunit alpha [Shewanella sp. ANA-3]
 gi|117613573|gb|ABK49027.1| DNA polymerase III, alpha subunit [Shewanella sp. ANA-3]
          Length = 1158

 Score = 1108 bits (2867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1045 (40%), Positives = 611/1045 (58%), Gaps = 36/1045 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NNL   ++F      AG
Sbjct: 2    SDPRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG    +          Q         ++ ++    +GYQ L +++S+ YL    +
Sbjct: 62   IKPIIGADFWM----------QVPGFDGEFCALTIIAMNNDGYQNLTQIISQAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V I   WL     EG+++L+GG  G + +A    ++   E     +++ F  R Y+ L
Sbjct: 112  GRVVIDQEWLVTY-NEGILLLSGGREGDVGKALLKGNNTQVESLCEFYQQHFEGRYYLEL 170

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R     V LA    +P+VATN  +FL  ED+E+H++ +A+     ++   R
Sbjct: 171  LRTGRTDEERYLHMAVGLAQEKGIPVVATNQVVFLKPEDFESHEIRVAIHDGFTLADPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   YL++  EM  +F+D+P ALENTVEIA+RC+  ++++   LP F   +     
Sbjct: 231  PKKYSEQQYLRSEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYFLPNFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L + +  GLE RL         +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -SIEDYLVDCSKKGLEERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  EPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +           V
Sbjct: 525  FSPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   +  RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + I+PP VN     F 
Sbjct: 765  ALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFKFT 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+ A
Sbjct: 825  VDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIEKLICA 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            GALD  G  R  ++ +L      A    K       ++F        D K    + +   
Sbjct: 885  GALDALGPHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVECTPWP 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +  
Sbjct: 945  DKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATRVM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GS++G +T  + +   E   F
Sbjct: 1005 LTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|255657970|ref|ZP_05403379.1| DNA polymerase III, alpha subunit [Mitsuokella multacida DSM 20544]
 gi|260850171|gb|EEX70178.1| DNA polymerase III, alpha subunit [Mitsuokella multacida DSM 20544]
          Length = 1128

 Score = 1108 bits (2867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1031 (36%), Positives = 605/1031 (58%), Gaps = 26/1031 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL VH+ +SLL+GA  +  +++   A    +IAITD   ++  ++F ++A   G++P
Sbjct: 2    PFTHLHVHTEFSLLDGASRIKELIETTKALGMDSIAITDHGAMYGVIDFYKEAKKQGVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +      +     +        ++LL     GY+ L++LVS   +        
Sbjct: 62   IIGCEVYVAPGARQEHR---EVNGVRYYHLILLAENQTGYRNLVKLVSLANVEGM-YYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L++   EG+I L+   +G I RA   ++ + A+  +  + ++F  +  ++ +Q 
Sbjct: 118  RVDKDLLRQYH-EGIICLSACIAGEIPRAILQDNMERADALVREYLEIFGRENFFLEIQN 176

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +  +  + +V+LA  +++ LVATN+  ++  ED E HD+L+ +  +      DR R
Sbjct: 177  HGLPEERKANAGLVELAKKYDVGLVATNDLHYVHREDSEFHDILLCIQMNKTFDDPDRMR 236

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              + D+YLK+  EM ++F DLPEA+ NT +IA RC    +     LP +          +
Sbjct: 237  FASDDYYLKSPEEMAALFPDLPEAIANTEKIAARCKVDFEFGHLQLPYYPIPA---PYAD 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +E  LR+     L  R A          +  R+RL++EL +I RM +  YFLIV DFI +
Sbjct: 294  DEAYLRHLCEENLPRRYAT-------VTEKIRERLEYELGIIHRMGYDSYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            ++++ I VGPGRGS AGS+ AY L IT++DPL++ LLFERFLNP+R++MPD D+DF   +
Sbjct: 347  SREHGIGVGPGRGSAAGSIVAYLLGITNLDPLKYDLLFERFLNPERVTMPDIDVDFDYIQ 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R +VI YV+ +YG++ VAQI+TFG++ AK A+RDVGR L +PY++V  + KL+PN+    
Sbjct: 407  RGKVIDYVKERYGYDHVAQIVTFGTMAAKGAIRDVGRVLNLPYAEVAEIAKLVPNELKIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ + + FR+A  +   V RL+++++K+EGL RH+STHAAG+VI   PL+  VP+ 
Sbjct: 467  LD-KAMQESADFRKAYESSEDVHRLIDLARKIEGLPRHSSTHAAGVVIARHPLTDYVPV- 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
              +     VT+++   +E+ GL+K DFLGL+TLT++  ++  + + R  KVD+  IP  D
Sbjct: 525  -SISEGTLVTEYDKDHVEELGLLKMDFLGLRTLTVISDTIANIEKSRHEKVDIDKIPLTD 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
              T  +L    T  +FQ+ES+GM Q +  + P+   D+I LV+LYRPGP+ + +V  +  
Sbjct: 584  GLTSKMLCEGKTGAVFQMESAGMTQLVRDLAPENFADLIPLVALYRPGPLGSGMVEDFIK 643

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             ++G++++  +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK  E
Sbjct: 644  GRHGEKEVTYMHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKKKHE 703

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  QKE F+ G  KN I   +A  IF+LL  FADYGFNKSH+AAYA++++QTA++K HY
Sbjct: 704  ILMAQKENFLDGCEKNHIDAGLANTIFDLLTHFADYGFNKSHSAAYALVAWQTAYLKAHY 763

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P EF+AA +T  + +  K+  + +  R+  I+I+PP +N     F V  + I + LAA++
Sbjct: 764  PAEFMAAMLTS-IMDTPKVSTYIELCRRMGIKILPPDINASSAYFSVDGDAIRFGLAAVR 822

Query: 844  GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG T   ++        PF SL DFC RVD + +NRRV+ESL+  GA D FG  R QLL
Sbjct: 823  NVGETAIENVARIRETGGPFSSLSDFCRRVDMRVVNRRVIESLIKCGAFDSFGAKRSQLL 882

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              L      A   +K+  +    +F+ E    +  + L        + R   E+   GFY
Sbjct: 883  AVLPQTVMEAAQQQKDAVSGQMGLFSDETIEETGMLQLPDIDEVPKAERLRWEKEATGFY 942

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             +GHPLD Y   L  +   G  +         +R+  M+   ++  T+KG  + + T  +
Sbjct: 943  ITGHPLDQYAAKLENLPRIGSLQPDTVRDKQVVRIGGMLTEAKRITTKKGDTMCFATVED 1002

Query: 1023 PAKEYEANFFP 1033
                 E   FP
Sbjct: 1003 FTDSIEVTVFP 1013


>gi|329929691|ref|ZP_08283383.1| putative DNA polymerase III subunit alpha [Paenibacillus sp. HGF5]
 gi|328935954|gb|EGG32411.1| putative DNA polymerase III subunit alpha [Paenibacillus sp. HGF5]
          Length = 1242

 Score = 1108 bits (2866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1045 (37%), Positives = 613/1045 (58%), Gaps = 32/1045 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL+GA  + +++ + AA    ++A+TD   ++ A+ F +   A GI+P
Sbjct: 3    SFVHLHVHSEYSLLDGAARIGDLVREAAALGMKSLALTDHGVMYGAVPFYKACLAQGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  I      +   +G      +  ++LL     GY+ L++L S  +L        
Sbjct: 63   IIGCEAYITAGSRKE---RGSRKDQPIYHLILLAKNETGYRNLMKLCSIGHLEG-YHYRP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI +  L     EG+I L+    G + +         A+   L ++ +FG+  Y+ LQ H
Sbjct: 119  RIDMEALA-AHHEGIICLSACLGGEVPQHLLHGREAEAKAAALRYQAIFGEDYYLELQDH 177

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ R   Q++QL+    +PLVATN+  +L+E D E  DVL+ +     V  +DR ++
Sbjct: 178  GIPEQKRVNPQLIQLSRETGIPLVATNDVHYLTENDAEVQDVLICIGTGKTVEDEDRLQI 237

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              +  YLK+ S+M  ++  +PEA+ NT +IA +C   L+    ILP +         K+ 
Sbjct: 238  QTNQLYLKSGSDMERLYPHVPEAILNTAKIADQCRLELEFGKSILPEY---SSLPEGKDA 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               LR+  ++GL  R       +      +  QRLD+EL VI  M FS YFLIV DFI +
Sbjct: 295  AEYLRDLCLSGLRERYEGTERWQDEGQRSELEQRLDYELGVIESMGFSDYFLIVWDFIAY 354

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF  +R
Sbjct: 355  AHRKGIAVGPGRGSSAGSLVAYTLQITNVDPMKYKLLFERFLNPERITMPDIDIDFSDER 414

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG E VAQIITFG++ A+AA+RDVGRAL +P+  VD+  KLIPN     
Sbjct: 415  RDEVIDYVVDKYGKEHVAQIITFGTMAARAAVRDVGRALNVPFGDVDKAAKLIPNHLGIS 474

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+    + +E     P V  L++++ K+EG+ RHASTHAAGIVI   PL+  VP+ 
Sbjct: 475  IE-RAMEQSPQLKEQYETKPKVRELIDMAMKVEGMPRHASTHAAGIVISREPLTDAVPLQ 533

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
             +      +TQ++M+ +E  GL+K DFLGL+TL++++++L ++ +  G ++D   +P DD
Sbjct: 534  -EGSEKTALTQYSMENLESVGLLKMDFLGLRTLSIIERTLRWIQELTGRELDFDQVPDDD 592

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              TY +L    T G+FQLES+G+R+ L+ ++P   EDI+++ +LYRPGP++ I  +   K
Sbjct: 593  QATYEMLGRGETAGVFQLESAGIRRVLKDLKPSVFEDIVSVNALYRPGPMEFIPKFIQAK 652

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+ +    HP + P+L +T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E +
Sbjct: 653  HGRIEPEYPHPDLIPILGDTYGIIVYQEQIMQIASTMAGFSLGEADLLRRAVSKKKREVL 712

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F+SG+ K G ++  A  +++++ +FA+YGF ++HAAAY V+++QTA++K HYPV
Sbjct: 713  DRERSHFVSGSLKLGYTEDEANRVYDMIVRFANYGFPRAHAAAYGVLAFQTAYLKAHYPV 772

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI---------- 835
             F+A+ +T  M +  K+ ++  +AR+ +I++MPP VN     F    +R           
Sbjct: 773  PFMASMLTAVMGSHRKVAEYVLEARRIDIEVMPPDVNESGTYFTPVMSRSAAEGSELQAD 832

Query: 836  -------YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                    + LAAIK VGT    +I+E   +KPF+SL DFC RVD +  N+RV+ESL+ A
Sbjct: 833  SPAGGGIRFGLAAIKNVGTQAVENIVEIRREKPFESLLDFCRRVDLRVCNKRVIESLIQA 892

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D     R QL+  LD   + A    K R +    +F   +    D I         +
Sbjct: 893  GAFDSLQGHRSQLVAMLDETVEAAVKWRKERDDLQIQLFDFVETANWD-IEYPDIPSYTA 951

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
            S + E E+ +LG Y SGHPLD ++  L + G     +       +   +A MVVS +   
Sbjct: 952  SQQLEFERELLGMYLSGHPLDGFEETLTESGADRLMDLHEAEDESMATVAGMVVSLKTIT 1011

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T++G  + ++   +  +  E   FP
Sbjct: 1012 TKQGKAMAFMECEDQIERCEVVLFP 1036


>gi|120602759|ref|YP_967159.1| subunit alpha [Desulfovibrio vulgaris DP4]
 gi|120562988|gb|ABM28732.1| DNA polymerase III, alpha subunit [Desulfovibrio vulgaris DP4]
          Length = 1175

 Score = 1108 bits (2866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1045 (40%), Positives = 609/1045 (58%), Gaps = 23/1045 (2%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            L++  E    FVHL  H+ YSLL+GA+ L ++  +       A AITD  NLF A  F  
Sbjct: 5    LSRTEENMSDFVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYT 64

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
               + GI+PIIGC++ +   D    T++      T   +VLL    EGY  L+ LV+R +
Sbjct: 65   TCKSFGIKPIIGCEVYVAATDRTDKTSEFAR---TRYHLVLLAQNNEGYHNLVRLVTRGF 121

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                     R+    L+E  ++GLI L+   +G + R                +  +F  
Sbjct: 122  TEG-FHYKPRVDKELLREY-SDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPG 179

Query: 181  RLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R Y+ LQ +   ++     ++++LA    LPLVATN+  +L   D EAHD+L+ +   T 
Sbjct: 180  RFYLELQSNGIKEQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTT 239

Query: 240  VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            V    R R  T + Y K+  EM   F+ +PEA+ NT  IA  C+  +       P +   
Sbjct: 240  VDDPKRMRFETRELYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELP 299

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E   +    + E +  A  GL+ RL +         + Y  RL++EL VI  M F GYFL
Sbjct: 300  EGMTL----DTEFQRLAEEGLKKRLEKHPDRDTIDHKAYWDRLEWELKVITDMGFPGYFL 355

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK N IPVGPGRGS AGS+ A++L IT++DP+ + LLFERFLN +R+SMPD 
Sbjct: 356  IVQDFINWAKNNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDI 415

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC+ RR EVIRYV  KYG + V+QI TFG ++AKA +RDVGRAL M + + DR+ KL
Sbjct: 416  DVDFCERRRTEVIRYVAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKL 475

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP D    +  +A+  +         DP + +LL++S +LEGL RHASTHAAG+VI D+P
Sbjct: 476  IPEDLKMTIK-KALEAEPDLATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKP 534

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD 597
            +S+ +P+Y+  + +  VTQF+MK +EK GL+KFDFLGL+T+TL+Q +LD +  Q     D
Sbjct: 535  MSEYLPLYKGKKGET-VTQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEITRQGKTPPD 593

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  +  DD ETY L +   T G+FQ+ESSGMRQ L  ++P C +DIIA+++LYRPGP+ +
Sbjct: 594  LDTLSLDDAETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGS 653

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  +  RK+G+  +    P ++  L+ T GVI+YQEQVMQIAQ++  Y+L  AD+LRR
Sbjct: 654  GMVDEFIKRKHGEVPVTYPVPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRR 713

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKKI E M +++ +F+ GA KN I K  A  IF+L+ KFA+YGFNKSH+AAYA+ISY 
Sbjct: 714  AMGKKIAEAMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYY 773

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K H+PVEF+AA +T EM N +K+ K+    +  +I+++ P+V     +F V + RI
Sbjct: 774  TAFLKVHFPVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVHEGRI 833

Query: 836  YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L  IK VG    R I++A  +  P+ SL D C RV+ +K+ +RV+E+L+  GA DC 
Sbjct: 834  VFGLGGIKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCL 893

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI------TLEKFSVENS 948
            G +R  +L SLD +   AQ   K R +   ++F   K               +       
Sbjct: 894  GCTRAGMLASLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAPEWPD 953

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              +   E+  LGF+ + HPL  Y+  L ++ +   EE+     G  IR A +V + ++  
Sbjct: 954  DQKLRFEKEALGFFLTSHPLQPYRKELFRLRLTPLEEARDMPPGAEIRTAVLVTTLKELM 1013

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T+KG R+ +    +     E  FFP
Sbjct: 1014 TKKGQRMAFAGVEDLTASAEVVFFP 1038


>gi|158319634|ref|YP_001512141.1| DNA polymerase III DnaE [Alkaliphilus oremlandii OhILAs]
 gi|158139833|gb|ABW18145.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs]
          Length = 1164

 Score = 1108 bits (2866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/1051 (37%), Positives = 618/1051 (58%), Gaps = 47/1051 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+G   +N  ++++      AIAITD  ++F  ++F + A   GI+PI
Sbjct: 5    FVHLHVHTEYSLLDGFTVINKAMERVKEMGMNAIAITDHGSMFGVVDFYKAAKKNGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++    +    M ++          +VLL    EGYQ +I++VS  +L        R
Sbjct: 65   IGCEVYTAPRS---MADKDPQKDKNQGHLVLLAKNEEGYQNIIKMVSNGFLEG-FYYKPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRH 189
            I    L E  ++G+I L+   +G I +    +  + A+   L    +F +   Y+ LQ H
Sbjct: 121  IDYDEL-ERHSKGIICLSACLAGDIQQLLLQDQYESAKALALRLNAMFEENSFYLELQDH 179

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +    +++L+    +PLVATN++ ++++ED +AHD+L+ +    +V  ++R R 
Sbjct: 180  NMAEQKKVNLGLIKLSRETGIPLVATNDAHYINKEDAKAHDILLCIQTGKIVEDQERMRF 239

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM+ IF   PEA+ NTV+IA +C+F    +   LP +   +       +
Sbjct: 240  PNDEFYLKSPEEMMKIFDFAPEAISNTVKIAEQCNFDFDFNTIHLPEYHVPQ----DVNK 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+ LR     GL  R            ++   RL+ EL+VI +M +  YFLIV DFI++A
Sbjct: 296  EDYLRKLCFEGLNKRY-------TSVTEELESRLEGELSVIEKMGYVEYFLIVWDFIKYA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N IPVGPGRGS AGS+ AY L ITD+DP++++L+FERFLNP+R+SMPD DIDFC +RR
Sbjct: 349  KDNGIPVGPGRGSAAGSIVAYTLGITDVDPIKYNLIFERFLNPERISMPDIDIDFCYERR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI YV+ KYG ++VAQIITFG++ A+AA+RDVGR + MPY++VD++ K IP      +
Sbjct: 409  EEVIDYVKQKYGEDKVAQIITFGTMAARAAIRDVGRVINMPYNEVDKIAKQIPFAIGMTI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   +     +     L++++++LEG+ RHASTHAAG+VI  +PL + VP+Y 
Sbjct: 469  E-KALKMNPELKSIYEENEQGRYLIDMARRLEGMPRHASTHAAGVVIAKKPLKEHVPLY- 526

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDH 606
             V  D   TQF M  +E+ GL+K DFLGL+TLT+++ ++D +    G+K+DLS   +DD 
Sbjct: 527  -VHDDNSTTQFTMGTLEELGLLKMDFLGLRTLTVIKDAIDLIEKNHGIKLDLSDSKYDDE 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y L++   TLG+FQLES+GM Q L+ ++P+C EDIIA +SLYRPGP+D+I  Y   KN
Sbjct: 586  KVYDLISKGDTLGLFQLESAGMIQFLKELKPNCFEDIIAGISLYRPGPMDSIPRYIENKN 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              EKI  IH  ++P+L  T G ++YQEQ+MQI + L+GYS   +D++RRAMGKK  + M+
Sbjct: 646  NPEKIKYIHESLEPILNVTYGCMVYQEQIMQIVRDLAGYSYGRSDLVRRAMGKKKMDVME 705

Query: 727  KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI             G  +NG+ + +A  I++ +  FA+YGFNKSHAAAYAV++Y
Sbjct: 706  QERKNFIYGIVNEKGEVEVAGCIRNGVPEDVANKIYDEMIDFANYGFNKSHAAAYAVLAY 765

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +TA++KT+Y VEF+AA MT  M N  K+ ++ QD ++ NI+I+PPS+N     F V    
Sbjct: 766  ETAYLKTYYKVEFMAALMTSVMGNTSKVVQYIQDCKKQNIKILPPSINRSFSKFTVEGES 825

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I ++L A+K VG     ++++       F +  DFC RV+SK +N+R +ESL+  GA D 
Sbjct: 826  IRFALGAVKNVGIGMINNLVQIRETTGDFSTFLDFCQRVESKDINKRAVESLIKCGAFDN 885

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVR 951
             G +R QL+ S + I    Q  ++ +     ++F    E     + +        +  +R
Sbjct: 886  MGGNRAQLMASFEGIMDNIQQEKRRKLEGQIDLFQMNEEMDASMNTVNFPDIKDFSEKIR 945

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI---------RGNNIRLAAMVV 1002
               E+ V+GFY SGHPL  Y+  L ++      + +  +          G  I +  M+ 
Sbjct: 946  LSMEKEVVGFYISGHPLSEYEKELEQIVSANSAQLIEAMENLAESQLKDGQPIIVGGMIA 1005

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                K TR    + ++   +     E   FP
Sbjct: 1006 EINSKITRNNQMMAFIVLEDLFGSLECIVFP 1036


>gi|323495347|ref|ZP_08100425.1| DNA polymerase III subunit alpha [Vibrio brasiliensis LMG 20546]
 gi|323310418|gb|EGA63604.1| DNA polymerase III subunit alpha [Vibrio brasiliensis LMG 20546]
          Length = 1159

 Score = 1108 bits (2866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1046 (39%), Positives = 607/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A   G
Sbjct: 2    SDPKFIHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPAVALTDFTNLCGLVKFYGTAHGCG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG    +          Q       +  + +L +   GY+ L  L+S+ YL    +
Sbjct: 62   VKPIIGADFLM----------QSAEFGDELTKLTVLAADNTGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+ +EG+I+L+GG SG I +A    + +V    +  ++  F DR Y+ L
Sbjct: 112  HQPVIDKEWLVEL-SEGVILLSGGKSGEIGKALLKGNHKVVSDCVEFYQTHFPDRFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        ++LA   ELP+VATN+ + L E  ++AH++ +A+     +    R
Sbjct: 171  TRTGRADEESYLHFALELAEQAELPVVATNDVVILDESLFDAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +   YL++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSAQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             EE   L  K+  GLE RL         +     +Y +RL  EL VI  M F GYFLIV 
Sbjct: 286  MEETEFLVMKSEEGLEERLEFLFPDPKVREERRPEYDERLKVELEVINNMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L   +  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHGFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +    E    D  +  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFKAEPALPELYENDEEIKELIDMCRILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKAPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  +++LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  AIESIPLDDLASFNLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +   L  T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDETWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRGTFKEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N     F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLYRFN 824

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V     I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L++
Sbjct: 825  VDETGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIY 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  ++ SL +  K A    +       ++F    +     +    K    
Sbjct: 885  AGALDRLGPHRAAMMASLADAVKAASQHHQAEAFGQSDLFGVLTEAPEEVEHKYTKVEPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ + 
Sbjct: 945  PEKVWLEGERDTLGLYLTGHPINAYIKELGKYTSCRLKDATPTRRDQSVTIAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|332160607|ref|YP_004297184.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp.
            palearctica 105.5R(r)]
 gi|325664837|gb|ADZ41481.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp.
            palearctica 105.5R(r)]
          Length = 1171

 Score = 1108 bits (2866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1045 (39%), Positives = 607/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A +AG++
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHSAGVK 74

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    +GYQ L  L+S  Y    G   
Sbjct: 75   PIIGADFYV----------QSEILGDELAHLTVLARNNKGYQNLTLLISEAYQRGYGAAG 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   EGLI+L+GG  G + +     +    E+ L  +++ F D  Y+ L R
Sbjct: 125  PIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHAQVEQCLEFYQEHFPDSYYLELIR 183

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP 
Sbjct: 184  TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 243

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 244  NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 298

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +      Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 299  TEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLIVMEF 358

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 359  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 418

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 419  MEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 478

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 479  GMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 537

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 538  PLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDI 597

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 598  ASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 657

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD
Sbjct: 658  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 717

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 718  MLRRAMGKKNPAEMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 777

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 778  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 837

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D     Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE L+ +G
Sbjct: 838  DEGEIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSG 897

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL    K A    K       ++F          + +         
Sbjct: 898  AFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQE 957

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             +  + E+  LG Y +GHP+  Y   + +  G    ++   T RG     A +V++ +  
Sbjct: 958  QIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIAARIM 1017

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1018 VTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|123443470|ref|YP_001007443.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp.
            enterocolitica 8081]
 gi|122090431|emb|CAL13299.1| DNA polymerase III, alpha chain [Yersinia enterocolitica subsp.
            enterocolitica 8081]
          Length = 1171

 Score = 1108 bits (2866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1045 (39%), Positives = 607/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A +AG++
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHSAGVK 74

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 75   PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   EGLI+L+GG  G + +     +    ++ L  +++ F D  Y+ L R
Sbjct: 125  PIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHAQVDQCLEFYQEHFPDSYYLELIR 183

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP 
Sbjct: 184  TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 243

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 244  NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 298

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +      Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 299  TEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLIVMEF 358

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 359  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 418

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 419  MEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 478

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 479  GMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 537

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 538  PLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDI 597

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 598  ASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 657

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD
Sbjct: 658  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 717

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 718  MLRRAMGKKNPAEMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 777

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 778  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 837

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D     Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE L+ +G
Sbjct: 838  DEGEIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSG 897

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL    K A    K       ++F          + +         
Sbjct: 898  AFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQE 957

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             +  + E+  LG Y +GHP+  Y   + +  G    ++   T RG     A +V++ +  
Sbjct: 958  QIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIAARVM 1017

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1018 VTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|269101954|ref|ZP_06154651.1| DNA polymerase III alpha subunit [Photobacterium damselae subsp.
            damselae CIP 102761]
 gi|268161852|gb|EEZ40348.1| DNA polymerase III alpha subunit [Photobacterium damselae subsp.
            damselae CIP 102761]
          Length = 1159

 Score = 1108 bits (2865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1044 (39%), Positives = 615/1044 (58%), Gaps = 37/1044 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +  I+ K +  Q PA+AITD  NL   ++F   A  AGI+
Sbjct: 4    PRFIHLRVHSDFSMIDGLAKVKPIIKKASELQMPALAITDFTNLCGLVKFYYAAHDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG               Q +     +  + +L +  EGY+ L  L+S  Y     +  
Sbjct: 64   PIIGA----------DFKVQSEELGDELFDLTILAANNEGYKNLTLLISEAYQRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   +GLI+L+GG +G + +A    +  + E+ +  ++  F D  Y+ L R
Sbjct: 114  PVIDKEWLIK-HKDGLILLSGGKTGDVGKALLKGNQNMVEQCVAFYQTYFSDSYYLELVR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        ++LA   +LP+VATN+   LS + +EAH++ +A+     ++  +RP 
Sbjct: 173  TGRPDEEAYLHFAIELAEKAQLPVVATNDVRLLSADQFEAHEIRVAIHDGYTLADPNRPK 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   YL++  EM  +F+D+PEALEN+VEIA+RC+  +++    LP F   E       
Sbjct: 233  NYSAQQYLRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPTGEL-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVVKSKEGLEERLEFLFPDPDIRAERRPEYDERLEVELEVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P +P
Sbjct: 408  MDKRDQVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPAEP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + + +++  +D  V  L+++ + LEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAFDAEPQLQQSYDSDEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R         ++
Sbjct: 527  PLYCDAEGHHPVTQFDKNDVESAGLVKFDFLGLRTLTIIDWALGMINPRLEAQGEDPVNI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP  D +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPMADQKSFTMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E +        H  +  +L  T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAVSYPDEKWQHESLKDILDPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F +GA KNG+   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRAVFEAGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQT W+K HYP EF+AA MT +MDN +KI     +  +  ++++PP VN     F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKIIGLVDECHRMKLKLLPPDVNKGLYRFNVD 826

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                I Y + A+KGVG     +I+ A  A   F  L DFC+R+D+KK+N+RVLE L+ +G
Sbjct: 827  DQGAIVYGIGAVKGVGEGPIENIIAAREAGGHFKDLFDFCARIDTKKVNKRVLERLIKSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A+D  G +R  ++ SLD+  + A    +       ++F    +     +           
Sbjct: 887  AMDRLGPNRASMMASLDDAIRAASQHHQAEAFGQTDMFGVLTEAPEEVEHKYANIPEWPD 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             V  E E+  LG Y +GHP++ Y   L+       +++  T R     +A +V++ +   
Sbjct: 947  KVWLEGERETLGLYLTGHPINSYLSELKHYTTWRLKDAQPTRRDGAATVAGLVIAARVMT 1006

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G+RIG +T  + +   E   F
Sbjct: 1007 TKRGTRIGLLTLDDRSGRMEVMLF 1030


>gi|113970961|ref|YP_734754.1| DNA polymerase III subunit alpha [Shewanella sp. MR-4]
 gi|113885645|gb|ABI39697.1| DNA polymerase III, alpha subunit [Shewanella sp. MR-4]
          Length = 1158

 Score = 1108 bits (2865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1045 (40%), Positives = 610/1045 (58%), Gaps = 36/1045 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NNL   ++F      AG
Sbjct: 2    SDPRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG    +          Q         ++ ++    +GYQ L +++S+ YL     
Sbjct: 62   IKPIIGADFWM----------QVPGFDDEFCALTIIAMNNDGYQNLTQIISQAYLRGHVA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V I   WL     EG+++L+GG  G + +A    ++   E     +++ F  R Y+ L
Sbjct: 112  GRVVIDQEWLVTY-NEGILLLSGGKEGDVGKALLKGNNTQVESLCEFYQQHFEGRYYLEL 170

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R     V LA    +P+VATN  +FL  ED+EAH++ +A+     ++   R
Sbjct: 171  LRTGRTDEERYLHMAVGLAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTLADPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   YL++  EM  +F+D+P ALENTVEIA+RC+  ++++   LP F   +     
Sbjct: 231  PKKYSEQQYLRSEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYFLPNFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L + +  GLE RL         +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -SIEDYLVDCSKKGLEERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  EPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +           V
Sbjct: 525  FSPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   +  RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + I+PP VN     F 
Sbjct: 765  ALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFKFT 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+ A
Sbjct: 825  VDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIEKLICA 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            GALD  G  R  ++ +L      A    K       ++F        D K    + +   
Sbjct: 885  GALDALGPHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVECTPWP 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +  
Sbjct: 945  DKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATRVM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GS++G +T  + +   E   F
Sbjct: 1005 LTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|253577284|ref|ZP_04854602.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843288|gb|EES71318.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 1110

 Score = 1108 bits (2865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1065 (37%), Positives = 599/1065 (56%), Gaps = 49/1065 (4%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            ++  SFVHL VHS YSLL+GA  L +++ K AA    A+A+TD   ++ A+ F +     
Sbjct: 34   DRMDSFVHLHVHSEYSLLDGAARLEDLVAKAAASGMKALALTDHGVMYGAVPFYKLCKKH 93

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIGC++        +   +G      +  ++LL     GY+ L++L S  +L    
Sbjct: 94   GIKPIIGCEVYFTAGSRKE---RGSRKDQPIHHLILLAKNETGYRNLMKLCSIGHLEG-F 149

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                RI    LQ    EGL+ L+    G +         + A+K  L ++  FG+  Y+ 
Sbjct: 150  HYKPRIDWDALQR-HREGLVCLSACLGGEVPFHLLRGHYEEAKKAALRYQAAFGEDFYLE 208

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H   ++ +    +VQLA      LV TN++ +LS+ED E  DVL+ V     V  +D
Sbjct: 209  LQDHGIPEQKKVNPLLVQLAGEIGAELVVTNDAHYLSKEDAEVQDVLICVGTGKTVDDED 268

Query: 245  RP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDD 302
            R    T   YLK   EM  +F  LPEA  NT +IA  C   L+    ILP +    E   
Sbjct: 269  RLKMHTNQLYLKTAEEMAQLFPHLPEAYANTAKIADSCELELEFDRHILPAYRPIPEGHT 328

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                  + L      GL  R  +  + +     +   QRL +EL +IA M FS YFLIV 
Sbjct: 329  AG----SYLAELCQQGLVDRYGELDVWRDLTEREKLEQRLRYELEIIASMGFSDYFLIVW 384

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI +A +N I  GPGRGS AGS+ AY L ITD+DP++++LLFERFLNP+R++MPD DID
Sbjct: 385  DFIAFAHRNGIATGPGRGSSAGSLVAYVLRITDVDPIKYNLLFERFLNPERVTMPDIDID 444

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RRDEVI YV +KYG E VAQIITFG++ A+AA+RDVGRAL +P+ +VD++ KLIP 
Sbjct: 445  FSDERRDEVIAYVVDKYGAEHVAQIITFGTMAARAAVRDVGRALNVPFGEVDKVAKLIPG 504

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  +A+ +    +        V RLL+++ K+EG+ RHASTHAAG+VI   PL+ 
Sbjct: 505  HLGMTIE-RALKESPDLKAMYDGSERVKRLLDMAMKVEGMPRHASTHAAGVVISRDPLTD 563

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSL 600
             VP+  +      +TQ++M+ +E  GL+K DFLGL+TL+++++ ++++  Q G   D  L
Sbjct: 564  AVPLQ-EGSEHTALTQYSMENLEAIGLLKMDFLGLRTLSIIERCMNWIKEQSGDAPDFRL 622

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P +D  TY +L    T G+FQLES+GMR+ L+ M+P   EDII+L++LYRPGP++ I  
Sbjct: 623  VPDNDPATYEMLGRGETTGVFQLESTGMRRVLKEMKPSVFEDIISLLALYRPGPMEFIPK 682

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y   K+G+  +   HP ++P+LK+T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK
Sbjct: 683  YIAGKHGQITVEYPHPDLEPILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKK 742

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             +E +D+Q+  F+SG+ + G ++  A  +++++ +FADYGF ++HAAAY V+++QTA++K
Sbjct: 743  KREVLDEQRGHFVSGSVQQGYTEDEANVVYDMIVRFADYGFARAHAAAYGVLAFQTAYLK 802

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR------ 834
             HYPV+F+A+ +T    +  K+ ++  + R+  I ++PP VN   V F            
Sbjct: 803  AHYPVQFMASMLTAVTGSHRKVAEYIVECRRMGIVVLPPDVNESSVLFTPQVGAGSADAA 862

Query: 835  --------------------------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
                                      I + LAAIK VGT     I+    ++PFDSL DF
Sbjct: 863  LSGEAKGRDAKDGHAGSGQEPPALGVIRFGLAAIKNVGTQAIESILRERKERPFDSLLDF 922

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
            C RVD +  N+RV+ESL+  GA D     R QLL  LD   + A    K R      +F 
Sbjct: 923  CRRVDLRTCNKRVIESLIQGGAFDSLPGHRAQLLAMLDETVEAALKWRKERDELQIQLFD 982

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
              +    D I         ++ + + E+ +LG Y SGHPLD +  +L   G+    +   
Sbjct: 983  FVESPNWD-IEYPDVPKFTAAQQLDLERELLGLYLSGHPLDDFDALLEGEGVDRLMDLAE 1041

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    +A MVVS +   T++G  + ++   +  +  E   FP
Sbjct: 1042 APDDTRTVVAGMVVSVKTITTKQGKAMAFMELEDQIERCEVVLFP 1086


>gi|238796624|ref|ZP_04640131.1| DNA polymerase III subunit alpha [Yersinia mollaretii ATCC 43969]
 gi|238719602|gb|EEQ11411.1| DNA polymerase III subunit alpha [Yersinia mollaretii ATCC 43969]
          Length = 1171

 Score = 1108 bits (2865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1045 (39%), Positives = 607/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  AG++
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGVK 74

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 75   PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   EGLI+L+GG  G + R     +    ++ L  +++ F D  Y+ L R
Sbjct: 125  PIIDRDWLIK-HKEGLILLSGGRMGDVGRFILRGNQAQVDQCLEFYQEHFPDSYYLELIR 183

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP 
Sbjct: 184  TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 243

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E       
Sbjct: 244  NYSPQQFMRDEEQMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPTGEM-----S 298

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 299  TEDFLVEKSKQGLEERLELLFPDPEERAQKRAEYDERLEIELKVINQMGFPGYFLIVMEF 358

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 359  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFC 418

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 419  MEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 478

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 479  GMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 537

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 538  PLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDI 597

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 598  ASIPLEDQKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 657

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD
Sbjct: 658  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 717

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 718  MLRRAMGKKNPAEMAKQRSVFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 777

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 778  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 837

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D     Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE L+ +G
Sbjct: 838  DEGEIVYGIGAIKGVGEGPIEAMLEARKEGGHFKELFDLCARVDTKKLNRRILEKLIMSG 897

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL    K A    K       ++F          + +         
Sbjct: 898  AFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMFGVLADAPEQVEQSYANVPPWQE 957

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             +  + E+  LG Y +GHP+  Y   + +  G +  ++   T RG       +V++ +  
Sbjct: 958  QIVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIAARVM 1017

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1018 VTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|318606915|emb|CBY28413.1| DNA polymerase III alpha subunit [Yersinia enterocolitica subsp.
            palearctica Y11]
          Length = 1171

 Score = 1107 bits (2864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1045 (39%), Positives = 608/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A +AG++
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHSAGVK 74

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    +GYQ L  L+S  Y    G   
Sbjct: 75   PIIGADFYV----------QSEILGDELAHLTVLARNNKGYQNLTLLISEAYQRGYGAAG 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   EGLI+L+GG  G + +     +    E+ L  +++ F D  Y+ L R
Sbjct: 125  PIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHAQVEQCLEFYQEHFPDSYYLELIR 183

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP 
Sbjct: 184  TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 243

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 244  NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 298

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +      Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 299  TEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLIVMEF 358

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 359  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 418

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 419  MEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 478

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 479  GMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 537

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 538  PLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDI 597

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 598  ASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 657

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD
Sbjct: 658  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 717

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 718  MLRRAMGKKNPAEMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 777

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 778  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 837

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D     Y + AIKGVG    + ++EA  +   F  L D C+RVD+KKLNRR+LE L+ +G
Sbjct: 838  DEGEIVYGIGAIKGVGEGPIKAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSG 897

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL    K A    K       ++F          + +         
Sbjct: 898  AFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQE 957

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             +  + E+  LG Y +GHP+  Y   + +  G    ++   T RG     A +V++ +  
Sbjct: 958  QIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIAARIM 1017

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1018 VTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|114048185|ref|YP_738735.1| DNA polymerase III subunit alpha [Shewanella sp. MR-7]
 gi|113889627|gb|ABI43678.1| DNA polymerase III, alpha subunit [Shewanella sp. MR-7]
          Length = 1158

 Score = 1107 bits (2864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1045 (40%), Positives = 610/1045 (58%), Gaps = 36/1045 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NNL   ++F      AG
Sbjct: 2    SDPRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG    +          Q         ++ ++    +GYQ L +++S+ YL     
Sbjct: 62   IKPIIGADFWM----------QVPGFDDEFCALTIIAMNNDGYQNLTQIISQAYLRGHVA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V I   WL     EG+++L+GG  G + +A    ++   E     +++ F  R Y+ L
Sbjct: 112  GRVVIDQEWLVTY-NEGILLLSGGKEGDVGKALLKGNNTQVESLCEFYQQHFEGRYYLEL 170

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R     V LA    +P+VATN  +FL  ED+EAH++ +A+     ++   R
Sbjct: 171  LRTGRPDEERYLHMAVGLAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTLADPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   YL++  EM  +F+D+P ALENTVEIA+RC+  ++++   LP F   +     
Sbjct: 231  PKKYSEQQYLRSEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYFLPNFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L + +  GLE RL         +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -SIEDFLVDCSKKGLEERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  EPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +           V
Sbjct: 525  FSPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   +  RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + I+PP VN     F 
Sbjct: 765  ALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFKFT 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+ A
Sbjct: 825  VDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIEKLICA 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            GALD  G  R  ++ +L      A    K       ++F        D K    + +   
Sbjct: 885  GALDALGPHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVECTPWP 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +  
Sbjct: 945  DKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATRVM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GS++G +T  + +   E   F
Sbjct: 1005 LTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|332140484|ref|YP_004426222.1| DNA polymerase III subunit alpha [Alteromonas macleodii str. 'Deep
            ecotype']
 gi|327550506|gb|AEA97224.1| DNA polymerase III subunit alpha [Alteromonas macleodii str. 'Deep
            ecotype']
          Length = 1154

 Score = 1106 bits (2862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1042 (40%), Positives = 602/1042 (57%), Gaps = 33/1042 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  F+HL+VHS +S+++G   +  IL K+AA + PA+AITD  N+   ++F  +A   GI
Sbjct: 2    SSPFIHLRVHSDFSMMDGLNKVKPILGKVAALEMPAVAITDQMNMCGLVKFYSEAHNLGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG    +  +                  + LL    EGY+ +  L+S+ YL      
Sbjct: 62   KPIIGTDFWVTNE----------AFGDEPFRLTLLAMNNEGYKNITILISKAYLRGHLAH 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I  +WL E   EG+I+L+G   G +      N++++ +  L  ++  F DR Y+ L 
Sbjct: 112  RAVIDQAWLAE-HAEGVIILSGAQHGDVGVGLMKNNAKLLDSALAFYESYFPDRFYLELI 170

Query: 188  RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R     +       V+LA    LP+VATN   F+  E +EAH++ + +     +    RP
Sbjct: 171  RTGRQGEEDYLHHAVELAEQRGLPVVATNEVCFIDREGFEAHEIRVCIHDGYTLDDNRRP 230

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R +   YL+   EMV +FSD+PEA+ENTVEIA+RC+  ++++   LP+F          
Sbjct: 231  KRYSEQQYLRTSEEMVELFSDIPEAIENTVEIAKRCNVTVRLNEYFLPQFPTG-----GM 285

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+ L   +  GLE RL         +     +Y  RL  EL VI +M F GYFLIV +
Sbjct: 286  TTEDFLVKVSEEGLEERLEFLFPDEEVRKAKRPEYDDRLRIELEVINQMGFPGYFLIVME 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 346  FIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP D
Sbjct: 406  CMDRRDEVIDHVAELYGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPD 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A   + +  E   +D  V  L+++++ LEG+ R+A  HA G+VI    ++  
Sbjct: 466  PGMTLE-KAFKAEPQLPEVYESDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPTTITDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
             P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++Q ++D + + + V VD+S I
Sbjct: 525  SPLYCDDEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKEGKNVDVDISAI 584

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV-- 659
            P +D +++  L    T  +FQLES GM++ ++ ++PDC EDIIALV+L+RPGP+ + +  
Sbjct: 585  PLEDPKSFRTLQNAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVD 644

Query: 660  VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
             + +RK+G+E+I        H  +  +L+ T G+I+YQEQVMQIAQ ++GYSL  AD+LR
Sbjct: 645  NFIDRKHGREEISYPDAEYQHECLQEILEPTYGIILYQEQVMQIAQEMAGYSLGGADLLR 704

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ+  F  GA  N I   +A+ IF+L+ KFA YGFNKSH+AAYA++SY
Sbjct: 705  RAMGKKKPEEMAKQRGTFAEGAKGNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSY 764

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833
            QT W+K HYP EF+AA M+ +MDN +KI     +  +  I+I+PP +N     F V    
Sbjct: 765  QTLWLKVHYPAEFMAAVMSADMDNTDKIVTLVDECERMGIEILPPDLNAGKYKFTVDSKG 824

Query: 834  RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            RI Y + AIKGVG      I+EA      F  L DFC++VD K++N+RVLE LV AGA+D
Sbjct: 825  RIVYGIGAIKGVGEGPIEAIIEAREIQGAFKDLFDFCAKVDIKRVNKRVLEKLVLAGAMD 884

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVR 951
              G  R  L+ +L      A    K  +    ++F        + +            V 
Sbjct: 885  NLGPHRATLMATLPEALAAAGQHAKAESFGQSDMFGLLTTEPEEVQQAFADVPEWPEKVW 944

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
             E E+  LG Y +GHP++ Y   LR        +   T +        +V+  +    ++
Sbjct: 945  LEGEKDTLGLYLTGHPINQYADELRYYTDGRLVDLKPTNKDQLASAVGLVLGVRVMTNKR 1004

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G R   VT  + +   +  FFP
Sbjct: 1005 GRRWAIVTLDDKSARMDVRFFP 1026


>gi|108762214|ref|YP_633981.1| DNA polymerase III subunit alpha [Myxococcus xanthus DK 1622]
 gi|108466094|gb|ABF91279.1| DNA polymerase III, alpha subunit [Myxococcus xanthus DK 1622]
          Length = 1185

 Score = 1106 bits (2862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1048 (39%), Positives = 612/1048 (58%), Gaps = 37/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL +H+ YSLL+GA+ + +++  +      ++A+TD  N+F A++F +KA  AGI+P
Sbjct: 2    SFTHLHLHTLYSLLDGAIRMKDLIKTVKEKGMSSVAVTDHGNMFGAIDFYKKAKDAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +  +          +          ++L+    EGY  L  L S  Y+        
Sbjct: 62   ILGMEAYVA-----GPKGREDRSEKVSHHLILVAKNEEGYANLRYLSSTAYMHG-FYYHP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI    L E  ++GL  LT    G +  A F      A +    +K +F     ++ +Q 
Sbjct: 116  RIDKKVLAE-HSKGLFALTACLGGEVTSACFRGDMDHARRAAQEYKDIFDPGHFFLEVQS 174

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++ +    + QL+   ++PL AT ++ ++  ED  AH++LM +A    ++   R +
Sbjct: 175  NGMPEQDKANENLKQLSRDLDIPLCATADAHYIKREDARAHELLMCIASGKTLADGKRMK 234

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + D  Y+ + +EM+  F D+PEA+ NT  IA +C+  L++  P+LP F   +       
Sbjct: 235  HSTDKLYVTSPTEMLEFFKDIPEAVHNTQRIAEQCNLELKLGKPMLPTFKVPD----SHT 290

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             ++ +   A  GL  R  + A    Y    + Y+ RL  E+ VI +M F GYFLIV DFI
Sbjct: 291  PDSYMAELAYEGLRERFTELAATVTYPIDREQYQARLALEIGVIQKMGFCGYFLIVQDFI 350

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAKK NIPVGPGRGSGAGS+ AYAL ITD+DP+ ++LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 351  NWAKKMNIPVGPGRGSGAGSLVAYALRITDVDPIPYNLLFERFLNPERVSMPDFDIDFCQ 410

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRRDEVI+YV  KYG   V QIITFGSL+AK+ LRDV R   +P+S+ DR+ KL+P    
Sbjct: 411  DRRDEVIQYVGRKYGEMNVGQIITFGSLKAKSVLRDVCRVFALPFSEGDRIAKLVPEVLN 470

Query: 485  HPVSLQAIADDSRFREARLADPSVDRL----------LEISQKLEGLYRHASTHAAGIVI 534
              +  +AI  + R +E      ++  +          LEI+  LEGL+R    HAAG+VI
Sbjct: 471  ITLR-EAIEMEPRLKEMMETPSNIGEVEGKPVTTRDVLEIALALEGLHRQPGMHAAGVVI 529

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             D+PL + VP+Y+       +TQF    +E AGL+KFDFLGLKTLT++Q +LD + +   
Sbjct: 530  ADKPLWEFVPVYQPPGEKTLITQFAKDEVEAAGLVKFDFLGLKTLTVIQHALDLVKRNHG 589

Query: 595  KVDL-SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            K      IP +D +T+ L+    T GIFQ+ESSG  + +  ++P+C ED+IA  +LYRPG
Sbjct: 590  KDIPRHEIPLNDEKTWELMAKGDTAGIFQMESSGFTEMVVKLKPNCFEDVIAAGALYRPG 649

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D+ +V  + NRK+G+EK+   HP ++P+LK+T GVI+YQEQVMQI+Q+L GY+L  AD
Sbjct: 650  PLDSGMVDVFINRKHGREKVSYPHPALEPVLKDTYGVIVYQEQVMQISQVLGGYTLGRAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  E M  ++  F+ G +KN +   +A  IF+L+ KFA+YGFNKSH+AAY +
Sbjct: 710  LLRRAMGKKKAEVMQAERAGFLEGCAKNNVDLKVAGEIFDLMEKFAEYGFNKSHSAAYGL 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++  TAW+K HYP EF+AA ++ E DN +K+ K   +AR+  ++++PP VN   ++F   
Sbjct: 770  VTIHTAWLKAHYPCEFMAALLSSEKDNTDKVVKHIGEARESGLEVLPPDVNQSDMEFGAV 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              +I + L AIKGVG      I+EA  D  F SL DFC RVDS+K+NR+V+E+LV AG+ 
Sbjct: 830  SGKIRFGLGAIKGVGEGAIESILEARKDGSFKSLFDFCERVDSRKVNRKVMEALVKAGSF 889

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD------KITLEKFSV 945
            D    SR Q+  +++         +K++     ++F    G  SD      K    +   
Sbjct: 890  DFEKRSRRQIFDTIEKAMNRGSASQKDKAAGQSSLFGMLAGPSSDGGGGGLKDDYVEVED 949

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +   R   E+  +GFY SGHPL  Y   L++   +         + + + +A +V   +
Sbjct: 950  WSEKERLSLEKEAIGFYVSGHPLHQYDKELKRYA-RPITAVQRARKDDKLTVAGIVTVLR 1008

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++ T+ G R+ WVT  + +   E   FP
Sbjct: 1009 ERPTKTGKRMAWVTIEDLSGSIELVCFP 1036


>gi|319404155|emb|CBI77748.1| DNA polymerase III alpha subunit [Bartonella rochalimae ATCC
            BAA-1498]
          Length = 1162

 Score = 1106 bits (2862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 582/1030 (56%), Positives = 750/1030 (72%), Gaps = 8/1030 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS+YSLLEGAL +  I+    +D+ PAIAITDTNNLF ALEFSQ   + GIQ
Sbjct: 16   PRFIHLRVHSAYSLLEGALKVKQIIQHAISDRMPAIAITDTNNLFGALEFSQYCFSDGIQ 75

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFP-TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQL ID  D    +   K        SIVL  ++  GY  L+ LVSR YL      
Sbjct: 76   PIIGCQLAIDFGDENCNSPLTKLHHSSDYSSIVLFAASETGYSHLVRLVSRAYLDKNDTD 135

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   +L     EG+I LTGG  GPI+ A   +  + A +RL   KK+FGDRLYV LQ
Sbjct: 136  LPHIKADFLLR-HHEGIIALTGGPGGPINSALTEDKKERAIERLTYLKKIFGDRLYVELQ 194

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  YDR  E  +++LAYT+E+PLVATN + FL++E Y AHD LMAVA   VVS  +R R
Sbjct: 195  RHGSYDRKVEEALIELAYTYEIPLVATNEAFFLNKEGYAAHDALMAVAEGQVVSNPNRKR 254

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD--IQK 305
            VT DHYLK++ EMVS+FSDLPEALEN+VEIA RC     +  PILP FIE+  D   + +
Sbjct: 255  VTSDHYLKSQDEMVSLFSDLPEALENSVEIALRCHAYAPIRKPILPGFIERSADTSSVLE 314

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E  EL ++A AGL++RL    +A+GY   DY QRL++E++VI RM+FSGYFLIV+DFI+
Sbjct: 315  AEAKELLDQAKAGLKMRLETIGLAEGYTIADYEQRLNYEISVITRMQFSGYFLIVSDFIK 374

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+
Sbjct: 375  WAKAHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDFCQE 434

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVIRYVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY  VD L KL+P  P  
Sbjct: 435  RREEVIRYVQQKYGCDQVAQIITFGKLQARAVLRDVGRVLEVPYRLVDYLTKLVPATPGS 494

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             + L QAI D+ +F E +  DP + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVP
Sbjct: 495  NIELAQAIIDEPKFEEEKKKDPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVP 554

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMK++E++GL+KFDFLGLKTLT+L+ ++DF+A++G KVDLS IP +
Sbjct: 555  MYRDPRSDMPVTQFNMKYVEQSGLVKFDFLGLKTLTVLKMAVDFVARKGTKVDLSHIPLN 614

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY +++   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN R
Sbjct: 615  DEATYAMMSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENISTYNIR 674

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+ +E+I SIHP ID ++KETQGVI+YQEQVMQIAQ L+GYSL EAD+LRRAMGKKI +E
Sbjct: 675  KHKEEEITSIHPKIDHLVKETQGVIVYQEQVMQIAQELAGYSLGEADLLRRAMGKKIHKE 734

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M +Q+ RF+SGA   G+ K  A  IF+LLAKFADYGFNKSHA AYA++SY TA+MK H+P
Sbjct: 735  MQEQRARFVSGAVDGGLDKEQANVIFDLLAKFADYGFNKSHATAYAIVSYHTAYMKAHHP 794

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMT +M N +K+  F ++A +  I+++ P V T    F+VG+N IYYSL+A+KG
Sbjct: 795  VEFLAASMTYDMTNTDKLNDFRREALRLGIEVVAPCVQTSHRIFEVGENCIYYSLSAVKG 854

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG     HI+    DKPF  LEDFC R+D + +N+R +ESL++AGA DCF  +R  LL S
Sbjct: 855  VGDMVVDHIVACRGDKPFRDLEDFCERIDPRIVNKRAMESLIYAGAFDCFNVAREVLLAS 914

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L  +   A  +  N ++   +IF    G   + + L + S  + + +   E +V+GFYFS
Sbjct: 915  LVTLNARALRILDNNSSGQVDIF-EMVGGLKEPLILSQASPWSVAEKLHYEFQVIGFYFS 973

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPL  Y+ +L K  ++ +    A+++G     RLA  VV+KQ +KT+ G ++G + FS+
Sbjct: 974  AHPLSEYQDVLIKKRVQTWNNFAASVKGGATAARLAGTVVAKQIRKTKSGKKMGVIQFSD 1033

Query: 1023 PAKEYEANFF 1032
             + +YEA  F
Sbjct: 1034 TSGQYEAVIF 1043


>gi|269960606|ref|ZP_06174978.1| DNA polymerase III subunit alpha [Vibrio harveyi 1DA3]
 gi|269834683|gb|EEZ88770.1| DNA polymerase III subunit alpha [Vibrio harveyi 1DA3]
          Length = 1159

 Score = 1106 bits (2861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1046 (39%), Positives = 614/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL++HS +S+++G   +  ++ K+A    PA+A+TD  NL   +++   A  +G
Sbjct: 2    SDPKFIHLRIHSDFSMVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGTAHGSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG    +          Q       +  + LL +  EGY+ L  L+S+ YL    +
Sbjct: 62   VKPIIGADFKM----------QSDEFGEELTQLTLLAANNEGYKNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  +WL E+ +EGLI+L+G  +G I +A    + +V +  +  + + F DR Y+ L
Sbjct: 112  HQPVLDKAWLAEL-SEGLIVLSGAKNGEIGKALLKGNRKVVDSCVEFYNQYFPDRFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        ++LA   ELP+VATN  +F+SE+ ++AH++ +A+     +    R
Sbjct: 171  VRTGRPDEETYLHFAIELAEEVELPVVATNEVVFISEDLFDAHEIRVAIHDGYTLEDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P+ YL+   EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSPEQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             EE + L  K+  GLE RL         +     +Y  RL  EL+VI +M F GYFLIV 
Sbjct: 286  MEETDFLVMKSREGLEERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +    E   AD  V  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFKAEPALPELYDADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  +      
Sbjct: 525  FAPIYADSEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKDPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIESIPLDDAPSFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  + ++PP +N     F 
Sbjct: 765  ALVSYQTLWLKMHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINAGLYRFN 824

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  +  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L++
Sbjct: 825  VDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIY 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            AGALD  G  R  L+ SL++  K A    +       ++F          +    +    
Sbjct: 885  AGALDRLGPHRAALMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPAW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ + 
Sbjct: 945  PEKVWLEGERETLGLYLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|46579764|ref|YP_010572.1| DNA polymerase III subunit alpha [Desulfovibrio vulgaris str.
            Hildenborough]
 gi|46449179|gb|AAS95831.1| DNA polymerase III, alpha subunit [Desulfovibrio vulgaris str.
            Hildenborough]
 gi|311233555|gb|ADP86409.1| DNA polymerase III, alpha subunit [Desulfovibrio vulgaris RCH1]
          Length = 1164

 Score = 1106 bits (2861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1036 (40%), Positives = 605/1036 (58%), Gaps = 23/1036 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YSLL+GA+ L ++  +       A AITD  NLF A  F     + GI+P
Sbjct: 3    DFVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSFGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +   D    T++      T   +VLL    EGY  L+ LV+R +         
Sbjct: 63   IIGCEVYVAATDRTDKTSEFAR---TRYHLVLLAQNNEGYHNLVRLVTRGFTEG-FHYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L+E  ++GLI L+   +G + R                +  +F  R Y+ LQ +
Sbjct: 119  RVDKELLREY-SDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLELQSN 177

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     ++++LA    LPLVATN+  +L   D EAHD+L+ +   T V    R R 
Sbjct: 178  GIKEQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPKRMRF 237

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + Y K+  EM   F+ +PEA+ NT  IA  C+  +       P +   E   +    
Sbjct: 238  ETRELYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEGMTL---- 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + E +  A  GL+ RL +         + Y  RL++EL VI  M F GYFLIV DFI WA
Sbjct: 294  DTEFQRLAEEGLKKRLEKHPDRDTIDHKAYWDRLEWELKVITDMGFPGYFLIVQDFINWA 353

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N IPVGPGRGS AGS+ A++L IT++DP+ + LLFERFLN +R+SMPD D+DFC+ RR
Sbjct: 354  KNNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFCERRR 413

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVIRYV  KYG + V+QI TFG ++AKA +RDVGRAL M + + DR+ KLIP D    +
Sbjct: 414  TEVIRYVAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIPEDLKMTI 473

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +         DP + +LL++S +LEGL RHASTHAAG+VI D+P+S+ +P+Y+
Sbjct: 474  K-KALEAEPDLATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYLPLYK 532

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDH 606
              + +  VTQF+MK +EK GL+KFDFLGL+T+TL+Q +LD +  Q     DL  +  DD 
Sbjct: 533  GKKGET-VTQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEITRQGKTPPDLDTLSLDDA 591

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
            ETY L +   T G+FQ+ESSGMRQ L  ++P C +DIIA+++LYRPGP+ + +V  +  R
Sbjct: 592  ETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMVDEFIKR 651

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+  +    P ++  L+ T GVI+YQEQVMQIAQ++  Y+L  AD+LRRAMGKKI E 
Sbjct: 652  KHGEVPVTYPVPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAMGKKIAEA 711

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M +++ +F+ GA KN I K  A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K H+P
Sbjct: 712  MAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAFLKVHFP 771

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEF+AA +T EM N +K+ K+    +  +I+++ P+V     +F V + RI + L  IK 
Sbjct: 772  VEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVHEGRIVFGLGGIKN 831

Query: 845  VGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG    R I++A  +  P+ SL D C RV+ +K+ +RV+E+L+  GA DC G +R  +L 
Sbjct: 832  VGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCLGCTRAGMLA 891

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI------TLEKFSVENSSVRFENEQR 957
            SLD +   AQ   K R +   ++F   K               +         +   E+ 
Sbjct: 892  SLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAPEWPDDQKLRFEKE 951

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             LGF+ + HPL  Y+  L ++ +   EE+     G  IR A +V + ++  T+KG R+ +
Sbjct: 952  ALGFFLTSHPLQPYRKELFRLRLTPLEEARDMPPGAEIRTAVLVTTLKELMTKKGQRMAF 1011

Query: 1018 VTFSEPAKEYEANFFP 1033
                +     E  FFP
Sbjct: 1012 AGVEDLTASAEVVFFP 1027


>gi|238787220|ref|ZP_04631019.1| DNA polymerase III subunit alpha [Yersinia frederiksenii ATCC 33641]
 gi|238724482|gb|EEQ16123.1| DNA polymerase III subunit alpha [Yersinia frederiksenii ATCC 33641]
          Length = 1160

 Score = 1106 bits (2860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1045 (39%), Positives = 607/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A +AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 64   PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL     EGLI+L+GG  G + +     +    ++ L  +++ F +  Y+ L R
Sbjct: 114  PIIDRDWLIN-HKEGLILLSGGRMGDVGKFILRGNQVQVDQCLEFYQEHFPNSYYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP 
Sbjct: 173  TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPEYDERLEIELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 527  PLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  ASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKNPAEMAKQRSVFEDGAKSQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL    K A    K       ++F          + +         
Sbjct: 887  AFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             +  + E+  LG Y +GHP+  Y   + +  G    ++   T RG     A +V++ +  
Sbjct: 947  QIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|307942140|ref|ZP_07657491.1| DNA polymerase III subunit alpha [Roseibium sp. TrichSKD4]
 gi|307774426|gb|EFO33636.1| DNA polymerase III subunit alpha [Roseibium sp. TrichSKD4]
          Length = 1159

 Score = 1105 bits (2859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 545/1028 (53%), Positives = 720/1028 (70%), Gaps = 13/1028 (1%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS+ SLLEGAL +  +LD   +D QPA+ ITDT NLF A EFS KA  +GIQPI
Sbjct: 20   FVHLRVHSALSLLEGALPIKKLLDLAKSDNQPALGITDTGNLFGAQEFSAKAWGSGIQPI 79

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGCQL I   D+++   +G+ P   +  +V++     GY  L+EL SR +L         
Sbjct: 80   IGCQLAIHFSDDVEPERKGELP---LCHVVVIAMDEVGYGNLMELTSRAFLDTDTGLLPH 136

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   +L    ++G+I+L+GG SGP+ +A    + + A +RL    K F DR Y+ +QRH 
Sbjct: 137  VSAEYLAS-HSDGVILLSGGVSGPLGKALLTGNKKAARERLQFLAKAFSDRFYIEIQRHG 195

Query: 191  GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +R  ES  + LAY   LP+VATN + F + EDYEAHD L+ ++   V+ + DR R+T
Sbjct: 196  MEAERKTESAFLDLAYEFNLPVVATNEAFFPAREDYEAHDALICISEGRVLIEDDRRRLT 255

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P+HY K R+EMV +FSDLPEAL++T+EIARRCS+      PILPRF   + D  + E   
Sbjct: 256  PEHYFKTRAEMVDLFSDLPEALQSTLEIARRCSYRPLRRDPILPRFAGADADPEEAERAE 315

Query: 310  E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+ +A  GL+ RL    +A G   +DY  RLD+E  +I RMKF GYFLIVADFI+WA
Sbjct: 316  AEELKRQAREGLQARLDAHGLAPGLEEKDYWDRLDYETGIIERMKFPGYFLIVADFIKWA 375

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K  +IPVGPGRGSGAGS+ A++LTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQ RR
Sbjct: 376  KAQDIPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFERFLNPERVSMPDFDIDFCQTRR 435

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVIRYVQ KYG ++VAQIITFGSLQA+A LRDVGR LQMPY QVDRLCKL+P +PA+PV
Sbjct: 436  EEVIRYVQEKYGRKQVAQIITFGSLQARAVLRDVGRVLQMPYGQVDRLCKLVPANPANPV 495

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L QAI ++ R REA   +  VDRLL+++QKLEGLYRHASTHAAG+VIGDRPL QLVP+Y
Sbjct: 496  TLGQAIDEEPRLREAAKEEEIVDRLLKMAQKLEGLYRHASTHAAGVVIGDRPLEQLVPLY 555

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            RD RSD+PV QFNMK +E AGL+KFDFLGLKTLT++  ++  + +R  K+D++ +P DD 
Sbjct: 556  RDPRSDMPVAQFNMKMVEDAGLVKFDFLGLKTLTVIDTAVKLIERRAEKIDVAGLPIDDK 615

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             TY LL    T G+FQLES GMR+A+ GM+PD  EDIIALV+LYRPGP++NI VYN  K+
Sbjct: 616  PTYELLARGETFGVFQLESQGMRRAIAGMKPDRFEDIIALVALYRPGPMENIPVYNAVKH 675

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G++++  +HPL++P+L ET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI  EM+
Sbjct: 676  GEQEMDCLHPLLEPILSETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIAAEME 735

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+ RF+ GA + GI+K  A  IF+L+AKFA+YGFNKSHAAAYA++SY TAW+K ++PVE
Sbjct: 736  IQRARFVDGAVERGINKGQAGTIFDLVAKFANYGFNKSHAAAYALVSYHTAWLKANFPVE 795

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+AASMTL+M N EK+  F Q+AR+  I ++PPS+N   V F V D +I Y++ AIKGVG
Sbjct: 796  FMAASMTLDMGNTEKLGDFRQEARRMKIDVVPPSINKSQVYFDVADGKILYAMGAIKGVG 855

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 HI+E   D PF  L DF  R+  K LN+R LE+LV AGA D    SR ++L+ LD
Sbjct: 856  EQAVEHIVEVRGDTPFKRLGDFARRISPKFLNKRTLENLVCAGAFDELEPSRARVLEGLD 915

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             +   AQ  E+N       +F    G    ++ L +     +  + + E   +GFY S H
Sbjct: 916  RVMGLAQRTEENAAIGQNELFG---GGGEQELQLPEVHGWTAEEKLQREHNAIGFYLSAH 972

Query: 967  PLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            PLD Y  +L KM ++ +      ++   +N RLA  V+S+Q++KT+ G+R+G V  S+  
Sbjct: 973  PLDEYTNLLEKMRVQQWAPFAEAVKKGASNGRLAGTVISRQERKTKTGNRMGIVRLSDST 1032

Query: 1025 KEYEANFF 1032
             ++E   F
Sbjct: 1033 GQFEGLLF 1040


>gi|164686689|ref|ZP_02210717.1| hypothetical protein CLOBAR_00284 [Clostridium bartlettii DSM 16795]
 gi|164604079|gb|EDQ97544.1| hypothetical protein CLOBAR_00284 [Clostridium bartlettii DSM 16795]
          Length = 1178

 Score = 1105 bits (2859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1061 (36%), Positives = 595/1061 (56%), Gaps = 54/1061 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  F HL VH+ YSLL+G   +  ++ +       ++AITD  N+F  ++F ++A   GI
Sbjct: 2    SSEFAHLHVHTEYSLLDGFSRVKKLIKRTKELGMKSVAITDHGNMFGVIDFYKEAKKQGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +P+IGC+L    +    +T++          ++LL     GYQ LI+LVS  Y+ D    
Sbjct: 62   KPVIGCELYTAQRS---LTDKDPNFDKRYGHLILLAENMTGYQNLIKLVSISYV-DGFYY 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
              R+ +  L+E  +EG+I L+   +G +  A    + + A++  LT+ ++F     Y+ L
Sbjct: 118  KPRVDIEALRE-HSEGIICLSACLAGDVSNALMNRNYEKAKEIALTYNEIFGQGNFYLEL 176

Query: 187  QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++    + +V+L+    +PLVATN+  ++ + D +AHDVL+ +     ++   R
Sbjct: 177  QDHNLPEQKEVNASLVKLSKELNIPLVATNDIHYVDKADSKAHDVLLCIQMGKTLNDPAR 236

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R  T + YLK+R EM  +F    EAL+NT +IA RC+     +   LP +   E     
Sbjct: 237  MRFGTEEFYLKSREEMEELFPYALEALDNTAKIAERCNVEFDFNTIHLPNYEVPEG---- 292

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  L      GL  R           +Q+   RL +EL VI +M +  YFLI  DFI
Sbjct: 293  YTTSGYLEELCYKGLYERYEN-------PSQEILDRLKYELGVINKMGYVEYFLITWDFI 345

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AK+N I VGPGRGS AGS+ AY L ITDIDP++++LLFERFLNP+R+SMPD DIDFC 
Sbjct: 346  NFAKENGIMVGPGRGSAAGSIVAYTLKITDIDPIKYNLLFERFLNPERVSMPDIDIDFCY 405

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI YV+ KYG + VAQIITFG++ AK A+RDVGR L +PY++VD++ K IPN   
Sbjct: 406  ERREEVIDYVKRKYGEDHVAQIITFGTMGAKLAIRDVGRVLDIPYNKVDKIAKEIPNALG 465

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  +   +     D     ++ IS++LEG+ RHASTHAAG+VI   P+ + VP
Sbjct: 466  MTID-KALETNPNLKSLYEQDQETKTIINISKELEGMLRHASTHAAGVVISKNPIDEYVP 524

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPF 603
            +Y+    D   TQF M  +E+ GL+K DFLGL+TLT+++ +LD +    G K+D S + +
Sbjct: 525  LYK--HQDAISTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIEKNHGRKIDFSKMDY 582

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD + + LL++  TLG+FQ+ES+GMR  ++ ++P   EDI+A +SLYRPGP+D+I  Y  
Sbjct: 583  DDPKVFELLSSGNTLGVFQMESAGMRSFMKQLKPSNFEDIVAGISLYRPGPMDSIPTYLE 642

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             K+  EKI  IH  + P+++ T G +IYQEQVM++ + L GYS   +D++RRAMGKK  +
Sbjct: 643  YKHNPEKITYIHEKLKPIMEVTYGCLIYQEQVMEVVRELGGYSYGRSDLVRRAMGKKKMD 702

Query: 724  EMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             M+++++ FI             G  +NG+ +  A  IF+ +  FA Y FNKSHAAAY V
Sbjct: 703  VMEEERQYFIHGKTDENGNIEIAGCVRNGVDEQTANKIFDDMIDFAKYAFNKSHAAAYGV 762

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            I+Y+TA++K HYPVEF+AA +T  M N +K+ ++ ++    NI+++ P +N     F V 
Sbjct: 763  IAYETAYLKAHYPVEFMAALITSVMGNTDKVVEYIRECNALNIKVLKPDINKSFAKFSVE 822

Query: 832  DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            DN I + LAA+K VG     +I+ E   +  F    +   R+DSK +N+RV+ESL+  G 
Sbjct: 823  DNNIRFGLAAVKNVGVNIINNIVIEREQNGEFTDFINLIKRLDSKDINKRVIESLIKCGG 882

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---------ITLE 941
             D  GY+R  L+   + + +      K       ++F    G   ++          ++ 
Sbjct: 883  FDEMGYNRASLMMGYEKVLESVSLERKKNIKGQISLFDGLDGLGQNEEIDRFENSTTSIA 942

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--------- 992
                     +   E+ VLG Y SGHPL  Y+  L        ++                
Sbjct: 943  SIQEFEEREKLALEKEVLGMYVSGHPLSEYEKELETRTSLNTKKLNEVKENLDKYLAMDQ 1002

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             N+ +  M+ +K+ + T++   + ++   +     E   FP
Sbjct: 1003 ENVIIGGMISNKRIQTTKRNEIMAFLEVEDLYGSIEVIVFP 1043


>gi|315648837|ref|ZP_07901932.1| DNA polymerase III, alpha subunit [Paenibacillus vortex V453]
 gi|315275805|gb|EFU39157.1| DNA polymerase III, alpha subunit [Paenibacillus vortex V453]
          Length = 1143

 Score = 1105 bits (2859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1045 (38%), Positives = 610/1045 (58%), Gaps = 32/1045 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL+GA  + +++ + AA    ++A+TD   ++ A+ F +   A GI+P
Sbjct: 3    SFVHLHVHSEYSLLDGAARIGDLVREAAALGMKSLALTDHGVMYGAIPFYKACLAQGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  I      +   +G      +  ++LL     GY+ L++L S  +L        
Sbjct: 63   IIGCEAYITAGSRKE---RGSRKDQPIYHLILLAKNEVGYRNLMKLSSIGHLEG-YHYRP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI +  L     EG+I L+    G + +         A+   L ++ +FGD  Y+ LQ H
Sbjct: 119  RIDMEALA-AHHEGIICLSACLGGEVPQHLLHGREAEAKAAALRYQAIFGDDYYLELQDH 177

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ R   Q++ L+    +PLVATN+  +L+EED E  DVL+ +     V  +DR ++
Sbjct: 178  GIPEQKRVNPQLIALSRETGIPLVATNDVHYLTEEDAEVQDVLICIGTGKTVEDEDRLQI 237

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              +  YLK+ SEM  ++  +PEA++NT +IA +C+  L+    ILP +         K  
Sbjct: 238  QTNQLYLKSGSEMERLYPHVPEAIQNTAKIADQCNLELEFGKSILPEY---SSLPEGKNA 294

Query: 308  ENELRNKAVAGLEVRL-AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               LR   + GL+ R              +  QRL++EL VI  M FS YFLIV DFI +
Sbjct: 295  AEYLRELCLNGLQERYGITERWQDEALRSELEQRLNYELGVIENMGFSDYFLIVWDFIAY 354

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF  +R
Sbjct: 355  AHRQGIAVGPGRGSSAGSLVAYTLQITNVDPMKYKLLFERFLNPERITMPDIDIDFSDER 414

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG E VAQIITFG++ A+AA+RDVGRAL +P+  VD+  KLIPN     
Sbjct: 415  RDEVIDYVVDKYGKEHVAQIITFGTMAARAAVRDVGRALNVPFGDVDKAAKLIPNHLGIS 474

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+    + +E     P V  L++++ K+EG+ RHASTHAAGIVI   PL+  VP+ 
Sbjct: 475  I-AKAMEQSPQLKEQYETRPKVRELIDMAMKVEGMPRHASTHAAGIVISRDPLTDAVPLQ 533

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
             +      +TQ++M+ +E  GL+K DFLGL+TL++++++L ++ +  G  +D   IP +D
Sbjct: 534  -EGSEKTALTQYSMENLESVGLLKMDFLGLRTLSIIERTLKWIQELTGGALDFEQIPDND 592

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              TY +L    T G+FQLES+G+R+ L+ ++P   EDI+++V+LYRPGP++ I  +   K
Sbjct: 593  GNTYEMLGRGETTGVFQLESAGVRRVLKDLKPSAFEDIVSVVALYRPGPMEFIPRFIQVK 652

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+      H  + P+L +T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E +
Sbjct: 653  HGQIDPEYPHEDLIPILGDTYGIIVYQEQIMQIASTMAGFSLGEADLLRRAVSKKKREVL 712

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F+SG+ K G S+  A  +++++ +FA+YGF ++HAAAY V+++QTA++K HYPV
Sbjct: 713  DRERSHFVSGSLKLGYSEDEANRVYDMIVRFANYGFPRAHAAAYGVLAFQTAYLKAHYPV 772

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-------------- 831
             F+A+ +T  M +  K+ ++  +AR+ +I++MPP VN     F                 
Sbjct: 773  PFMASMLTAVMGSHRKVAEYVLEARRIDIEVMPPDVNESGTYFTPVVSQSESGSLDEGSH 832

Query: 832  ---DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
               +  I + LAAIK VGT    +I+E   +KPF+SL DFC RVD +  N+RV+ESL+ A
Sbjct: 833  HFTEGGIRFGLAAIKNVGTQAVENIVEIRREKPFESLLDFCRRVDLRVCNKRVIESLIQA 892

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D     R QL+  LD   + A    K R +    +F   + T  D I         +
Sbjct: 893  GAFDSLPGHRSQLVAMLDETVEAAVKWRKERDDLQIQLFDFVEATNWD-IEYPDIPPYTA 951

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              + E E+ +LG Y SGHPLD Y+  L + G     +       +   +A MVV+ +   
Sbjct: 952  GQQLEFERELLGMYLSGHPLDGYEDTLTESGADRLMDLHEAADESMAAVAGMVVTLKTIT 1011

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T++G  + ++   +  +  E   FP
Sbjct: 1012 TKQGKAMAFMECEDQIERCEVVLFP 1036


>gi|312173372|emb|CBX81626.1| DNA polymerase III alpha subunit [Erwinia amylovora ATCC BAA-2158]
          Length = 1160

 Score = 1105 bits (2858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1045 (40%), Positives = 613/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G    + ++   A+   PAI ITD  NL   ++F   A   G++
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTSPLVKYAASMGMPAIGITDFTNLCGLVKFYGTAHGQGMK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   ++  +               +  I +L +  EGYQ L  L+SR Y    G   
Sbjct: 64   PIIGADFNVSSE----------AMGDELTQITVLAADNEGYQNLTLLISRAYQRGYGPAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   +GLI+L+GG  G + +     +     + L  +++ F DR Y+ L R
Sbjct: 114  PTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNHTQVRECLSFYQQHFPDRYYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V+LA    +P+VATN   FL+E D++AH++ +A+     +    RP 
Sbjct: 173  TGRPDEEAYLHAAVELAVAQGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL++  EM  +FSD+PEALEN+VEIARRC+  +++    LP+F   E       
Sbjct: 233  HYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGEYFLPQFPTGEM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  ++  GLE RL         +     DY QRLD ELNVI +M F GYFLIV +F
Sbjct: 288  TEDFLVVESKKGLEERLEFLFPDEKVRAERRADYDQRLDIELNVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDLVIEHVAEMYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQITDFS 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   D PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +        +D+
Sbjct: 527  PLYCDENGDHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEAPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM +Q+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKNPVEMARQRGGFEDGAKARGIDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECLRMGLKVLPPDINSGLYQFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D     Y + AIKGVG      I+EA  +   F  L D C+R D+KK+NRR+LE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ +L +  K A    K       ++F    +     + +         
Sbjct: 887  AFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSDVKPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             ++ + E+  LG Y +GHP++ Y   + +  G +  ++   T RG     A +VV+ +  
Sbjct: 947  QIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGLVVAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|53804349|ref|YP_113748.1| DNA polymerase III subunit alpha [Methylococcus capsulatus str. Bath]
 gi|53758110|gb|AAU92401.1| DNA polymerase III, alpha subunit [Methylococcus capsulatus str.
            Bath]
          Length = 1165

 Score = 1105 bits (2858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1043 (41%), Positives = 616/1043 (59%), Gaps = 31/1043 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL++H+ YSL++G + +  ++ +++    PA+A+TD  NLF+ ++F + A  AGI+
Sbjct: 3    PKFVHLRIHTEYSLVDGIVRIKPLVKRLSEFGMPAVAVTDQCNLFALVKFYKAAMGAGIK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  + +          Q      +   + LLV   EGY  L EL+SR Y  +Q +  
Sbjct: 63   PIAGADVWL----------QNPQDVSSPHRLTLLVQNQEGYLALTELISRSYQENQHQGV 112

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   WL +    GLI L+GG  G I  A    S   A +    +  +F DR Y+ + R
Sbjct: 113  PMLMPEWLADC-NAGLIALSGGRDGAIGHALLAGSGAEATRLAEYWGGMFRDRFYLEVCR 171

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA   +LP+VATN+  FLS +++EAH+  + +    V+    RPR
Sbjct: 172  TGRANEERYIDAAVELAACLDLPVVATNDVRFLSAKEFEAHEARVCIHQGRVLDDPRRPR 231

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   YL++  EM+S+F+DLPEALEN+VEIARRC+  L +    LP F           
Sbjct: 232  DYSEQQYLRSEEEMLSLFADLPEALENSVEIARRCNLGLTLGKNFLPDFPVPAGMTPDDF 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               + R      L VR   GA       Q Y  RL+ EL+VI  M F GYFLIVADFIQW
Sbjct: 292  FSEQSRQGLKERLAVRPPSGAGTLEERTQRYWCRLELELSVIREMGFPGYFLIVADFIQW 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGSGAGS+ AYAL ITD+DP+ F LLFERFLNP+R+SMPDFD+DFC +R
Sbjct: 352  AKSQGIPVGPGRGSGAGSLVAYALKITDLDPIEFDLLFERFLNPERVSMPDFDVDFCMER 411

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV  KYG ++V+QIIT+GS+ AKA +RDVGR L  PY  VDR+ KLIP +    
Sbjct: 412  RDEVIDYVARKYGRDKVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDRIAKLIPFELGIT 471

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +S +A+ D    R++   D  V  LL+++Q LEG+ R+   HA G+VI    L    P+Y
Sbjct: 472  LS-KALEDSEELRKSYEEDEEVRALLDLAQSLEGITRNPGKHAGGVVIAPSRLIDFSPLY 530

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLI 601
             +      VTQF+   +E  GL+KFDFLGL+TLT++  +L  +  +        VD++ I
Sbjct: 531  CEPGGGNLVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWALADINAKRRAAGEEPVDINRI 590

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
            P DD +TY LL    T  +FQLES GM+  ++ ++PDC EDIIALV+L+RPGP+ + +V 
Sbjct: 591  PLDDPKTYELLGRCATTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVD 650

Query: 661  -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y N K+G+ K    HP+++P+LK T GVI+YQEQVMQIA+ ++GY+L  AD+LRRAMGK
Sbjct: 651  DYINVKHGRTKAEYPHPVLEPILKPTNGVILYQEQVMQIARDMAGYTLGGADLLRRAMGK 710

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM KQ+E FI+GA++ GI  +I+ +IF+L+ KFA YGFNKSH+AAYA++SYQTAW+
Sbjct: 711  KKPEEMAKQREIFIAGATRQGIDPSISSHIFDLMEKFAGYGFNKSHSAAYALVSYQTAWL 770

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYS 838
            K HYP EF++A ++ +MDN +K+     + R+  + I+PP +N     F V G   I Y 
Sbjct: 771  KAHYPAEFMSAVLSADMDNTDKVVVLIDECREMKLSILPPDINLSEYRFTVRGRREILYG 830

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L A+KGVG T    I++    + PF  L D C R+D +K NRRVLE+++ AG  DCF  +
Sbjct: 831  LGAVKGVGQTAIDDILQERKNNGPFTDLLDLCRRIDLRKANRRVLEAMIRAGVFDCFDRN 890

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSVENSSVRFE 953
            R  L  +L ++ K A+          +++F    A      S  +   +      + R  
Sbjct: 891  RAALFAALPDVVKAAEQQGAMSAAGQDDLFGGFTAESPAASSAGLVATEIEPWAEAERLA 950

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NNIRLAAMVVSKQQKKT 1009
             E+  LG Y +GHP+  ++  L ++        +    G      + +A ++V  + + T
Sbjct: 951  QEKATLGLYLTGHPITPHERELEQIVTSRLGPLMGEGEGGRGDTRVVVAGLIVDIRTRLT 1010

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
            R G ++G+++  +     E   +
Sbjct: 1011 RSGQKMGFLSLDDRTGRMEIAVY 1033


>gi|238763963|ref|ZP_04624919.1| DNA polymerase III subunit alpha [Yersinia kristensenii ATCC 33638]
 gi|238697780|gb|EEP90541.1| DNA polymerase III subunit alpha [Yersinia kristensenii ATCC 33638]
          Length = 1171

 Score = 1105 bits (2858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1045 (39%), Positives = 605/1045 (57%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 74

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 75   PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   EGLI+L+GG  G + +     +    +  L  +++ F    Y+ L R
Sbjct: 125  PIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHTQVDLCLEFYQEHFPGSYYLELIR 183

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP 
Sbjct: 184  TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 243

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 244  NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 298

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 299  TEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPEYDERLEIELKVINQMGFPGYFLIVMEF 358

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 359  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 418

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 419  MEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 478

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 479  GMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 537

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 538  PLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDI 597

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 598  ASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 657

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD
Sbjct: 658  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 717

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 718  MLRRAMGKKNPEEMAKQRSIFEDGAKSQGVEGELAIKIFDLVEKFAGYGFNKSHSAAYAL 777

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 778  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 837

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D     Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE L+ +G
Sbjct: 838  DEGEIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSG 897

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL    K A    K       ++F          + +         
Sbjct: 898  AFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQE 957

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             +  + E+  LG Y +GHP+  Y   + +  G    ++   T RG     A +V++ +  
Sbjct: 958  QIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIASRVM 1017

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1018 VTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|238784895|ref|ZP_04628895.1| DNA polymerase III subunit alpha [Yersinia bercovieri ATCC 43970]
 gi|238714212|gb|EEQ06224.1| DNA polymerase III subunit alpha [Yersinia bercovieri ATCC 43970]
          Length = 1171

 Score = 1105 bits (2858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1045 (39%), Positives = 605/1045 (57%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 74

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 75   PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL     EGLI+L+GG  G + +     +    ++ L  +++ F    Y+ L R
Sbjct: 125  PIIDRDWLIR-HKEGLILLSGGRMGDVGKFILRGNQIQVDQCLEFYQEHFPGSYYLELIR 183

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP 
Sbjct: 184  TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 243

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 244  NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGKM-----S 298

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 299  TEDFLVEKSKQGLEERLELLFPDPEVRAQKRPEYDERLEIELKVINQMGFPGYFLIVMEF 358

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 359  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFC 418

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 419  MEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 478

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 479  GMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 537

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 538  PLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDI 597

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 598  ASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 657

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD
Sbjct: 658  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 717

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 718  MLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 777

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 778  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 837

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D     Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE L+ +G
Sbjct: 838  DEGEIVYGIGAIKGVGEGPIEAMLEARKEGGHFKELFDLCARVDTKKLNRRILEKLIMSG 897

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL    K A    K       ++F          + +         
Sbjct: 898  AFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMFGVLADAPEQVEQSYANVPPWQE 957

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             +  + E+  LG Y +GHP+  Y   + +  G +  ++   T RG       +V++ +  
Sbjct: 958  QIVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIAARVM 1017

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1018 VTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|170727605|ref|YP_001761631.1| DNA polymerase III subunit alpha [Shewanella woodyi ATCC 51908]
 gi|169812952|gb|ACA87536.1| DNA polymerase III, alpha subunit [Shewanella woodyi ATCC 51908]
          Length = 1157

 Score = 1105 bits (2858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1045 (40%), Positives = 609/1045 (58%), Gaps = 36/1045 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              PSFVHL+VHS +S+ +G   +  I+ K++    PA+A+TD  NL   ++F +    AG
Sbjct: 2    SDPSFVHLRVHSDFSMSDGLAKVKPIIGKVSELGMPAVALTDQTNLCGLVKFYEACHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+P+IG    + +    K           + ++ +L    EGY+ L  L+S  YL     
Sbjct: 62   IKPLIGSDFWVKVPGFDK----------NLCAVTVLAMNNEGYKNLTLLISDAYLRGHID 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL +  +EG+I+L+GG  G I +A    +    E  +  ++  F DR Y+ L
Sbjct: 112  DRAVIDHEWLAKY-SEGIILLSGGRQGDIGQALLKGNLPQVESLVEFYQTHFPDRYYLEL 170

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R     V+LA    LP+VATN  +F + E +EAH++ +A++    ++   R
Sbjct: 171  LRTGRPDEERYLHMAVELAEVKGLPVVATNQVVFNTPELFEAHEIRVAISDGFTLADPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  + + Y K+  +M  +F D+PEA+ENTV+IA+RC+  +++    LP F   E     
Sbjct: 231  PKKYSAEQYFKSSEQMCELFEDIPEAIENTVQIAKRCNVTVRLGEYFLPNFPTGEL---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L   +  GLE RL         +      Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -TIEDFLVAVSEKGLEERLEFLFPDPEVRAEKRPKYDERLDVELKVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW K N+IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID
Sbjct: 346  EFIQWGKDNDIPIGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDID 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ K++P 
Sbjct: 406  FCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMVPA 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A   +   +E+  AD  V  L+++ + LEG+ R+A  HA G+VI    ++ 
Sbjct: 466  EPGMTL-AKAFEVEPALQESYDADEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +       +V
Sbjct: 525  FAPIYCDAEGQNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALQMVNAKKDKLGEERV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  RIESIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   +  RK+G+E +        H  +  +L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 645  SGMVDNFIERKHGREAVSYPDSEYQHESLQWVLEPTYGIILYQEQVMQIAQVLAGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  G+  NG+   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRGTFEEGSINNGVDGPLSMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA M+ +MDN +KI     +  +  + ++PP VN   + F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVILVDECERMEMPLLPPDVNKGLLKFN 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V D     Y + AIKGVG      I+ A  D PF  L DFC+RVD KKLN+R++E L+ A
Sbjct: 825  VDDEGNIVYGIGAIKGVGEGPVDSILAARKDGPFKDLFDFCARVDLKKLNKRIMEKLICA 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            GALD  G  R  ++ +L    + A    K       ++F        D K    + +   
Sbjct: 885  GALDTLGPHRAAMMATLPEAIRAADQNAKAEAIGQHDMFGLLNSDPEDIKQQFVECTPWP 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              V  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +  
Sbjct: 945  DKVWLEGERETLGLYLTGHPINQYLKELKHYTSCRLKDIHPTERGKTMKAAGLVVATRVM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GS++G VT  + +   E   F
Sbjct: 1005 MTKRGSKMGLVTLDDKSARLEVMLF 1029


>gi|308185755|ref|YP_003929886.1| DNA polymerase III, alpha subunit [Pantoea vagans C9-1]
 gi|308056265|gb|ADO08437.1| DNA polymerase III, alpha subunit [Pantoea vagans C9-1]
          Length = 1160

 Score = 1105 bits (2857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1045 (40%), Positives = 619/1045 (59%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G      ++ K AA   PAIAITD  NL   ++F   A +AGI+
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P+IG   ++  +               +  + +L S+  GYQ L  L+SR Y    G   
Sbjct: 64   PVIGADFNVASE----------LMGDELTQLTVLASSDTGYQNLTLLISRAYQRGYGVDG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+  EGLI+L+GG  G + R+    ++ +  + L  +++ F DR Y+ L R
Sbjct: 114  PIIDRDWLIEL-QEGLILLSGGRRGDVGRSLLRGNNALVSQCLSFYQQHFPDRYYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V+LA    +P+VATN   F++ ED++AH++ +A+     +    RP 
Sbjct: 173  TGRQDEESYLHAAVELAIAEGIPVVATNEVCFINAEDFDAHEIRVAIHDGYTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RL+ ELNVI +M F GYFLIV +F
Sbjct: 288  TEDYLVVKSREGLEERLVFLFPDEAERAEKRPEYDERLEIELNVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDQVIEHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +      AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFIAEPQLPAMYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        +D+
Sbjct: 527  PLYCDEHGQFPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKEGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA   GI   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFRDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYPFHVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +   I Y + AIKGVG      I++A  +   F  L D C+R D+KK+NRRV+E L+ +G
Sbjct: 827  EAGEIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ +L +  K A    K       ++F    +     + +    +    
Sbjct: 887  AFDRLGPHRAALMSALSDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYASVTPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V+ + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +  
Sbjct: 947  QVQLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKITVAAGLVIAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|188533052|ref|YP_001906849.1| DNA polymerase III subunit alpha [Erwinia tasmaniensis Et1/99]
 gi|188028094|emb|CAO95951.1| DNA polymerase III subunit alpha [Erwinia tasmaniensis Et1/99]
          Length = 1160

 Score = 1105 bits (2857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1045 (40%), Positives = 612/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G      ++   A    PAI ITD  NL   ++F   A   G++
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTAPLVKYAAKMGMPAIGITDFTNLCGLVKFYGTAHGQGMK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   +++ +               +  I +L +  +GYQ L  L+SR Y    G   
Sbjct: 64   PIIGADFNVNSE----------AMGDELTQITVLAADNQGYQNLTLLISRAYQRGYGPAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   +GLI+L+GG  G + +     +     + L  +++ F DR Y+ L R
Sbjct: 114  PTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNHVQVNECLNFYQQHFPDRYYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D        V+LA    +P+VATN   FL+E D++AH++ +A+     +    RPR
Sbjct: 173  TGRPDEETYLHAAVELAVAQSVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL++  EM  +FSD+PEALEN+VEIARRC+  +++    LP+F   E       
Sbjct: 233  EYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGEYFLPQFPTGEM-----T 287

Query: 307  EENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +      Y +RLD ELNVI +M F GYFLIV +F
Sbjct: 288  TEDFLVVKSKQGLEERLTFLFPDEKIRAERRPAYDERLDIELNVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDLVIEHVAEMYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        +D+
Sbjct: 527  PLYCDEHGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINARRAKSGEAPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKNPEEMAKQRGGFEDGAKARGIDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D     Y + AIKGVG      I+EA  +   F  L D C+R D+KK+NRR+LE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ +L +  K A    K       ++F    +     + +         
Sbjct: 887  AFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSDVKPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             ++ + E+  LG Y +GHP++ Y   + +  G +  ++   T RG     A +VV+ +  
Sbjct: 947  QIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGLVVAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|118590015|ref|ZP_01547419.1| DNA polymerase III subunit alpha [Stappia aggregata IAM 12614]
 gi|118437512|gb|EAV44149.1| DNA polymerase III subunit alpha [Stappia aggregata IAM 12614]
          Length = 1154

 Score = 1104 bits (2856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/1028 (53%), Positives = 721/1028 (70%), Gaps = 12/1028 (1%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +VHL+VHS+ SLLEGAL +  +LD   AD QPA+AI DTNNLF A EF+ KA  AGIQPI
Sbjct: 14   YVHLRVHSALSLLEGALPIKKLLDLAKADDQPALAIADTNNLFGAQEFATKAWGAGIQPI 73

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
              CQL +   D L+    G+   P +  +VLL  T  GY  L+EL SR +L  +      
Sbjct: 74   AACQLSVFFDDGLE---SGRRGEPALSDVVLLAMTEAGYGNLMELSSRAFLDTETGLRPH 130

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   +L    +EG+I+LTGG  GPI  A       +A+ RL T    F  R YV +QRH 
Sbjct: 131  VSSGYLLS-KSEGVIVLTGGVGGPIGAALLAGRKDLAKSRLQTLADRFQGRCYVEIQRHG 189

Query: 191  GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +R  E   + LAY H LPLVATN + F   EDYEAHD L+ ++   V+ + DR R+T
Sbjct: 190  MEAERKTEDAFLDLAYEHGLPLVATNEAFFPRREDYEAHDALICISEGRVLIEDDRRRLT 249

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P+HY K+R+EM ++F+DLPEALE+TVEIARRCSF     APILPRF   + D  + E+  
Sbjct: 250  PEHYFKSRAEMCALFADLPEALESTVEIARRCSFRPLKRAPILPRFAGADADPEEAEKAE 309

Query: 310  E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L  +A  GL  RL    +A G   +DY  RLD+E  +I RMKF GYFLIVADFI+WA
Sbjct: 310  AEELIRQAREGLRARLDVHGLAPGLEEKDYWDRLDYETGIIERMKFPGYFLIVADFIKWA 369

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K  +IPVGPGRGSGAGS+ A++LTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQ RR
Sbjct: 370  KAQDIPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFERFLNPERVSMPDFDIDFCQTRR 429

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVIRYVQ KYG ++VAQIITFGSLQA+A LRDVGR LQMPY QVDRLCKL+P +PA+PV
Sbjct: 430  EEVIRYVQEKYGRQQVAQIITFGSLQARAVLRDVGRVLQMPYGQVDRLCKLVPANPANPV 489

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L QAI ++ R REA   +  V+RLL ++QKLEGLYRHASTHAAG+VIGDRPL QLVP+Y
Sbjct: 490  TLGQAIEEEPRLREAAKEEEIVERLLGMAQKLEGLYRHASTHAAGVVIGDRPLEQLVPLY 549

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            RD RSD+PV QFNMK +E+AGL+KFDFLGLKTLT++  ++  + +RG+ VD++ +P DD 
Sbjct: 550  RDPRSDMPVAQFNMKMVEEAGLVKFDFLGLKTLTVIDTAVKLIERRGIDVDVAALPIDDE 609

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY LL    T G+FQLES GMR+A+ GM+PD  EDIIALV+LYRPGP++NI VYN  K+
Sbjct: 610  KTYQLLARGETFGVFQLESQGMRRAIAGMKPDRFEDIIALVALYRPGPMENIPVYNAVKH 669

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G++    +HPL++P+L ET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI  EM+
Sbjct: 670  GEQDPDCLHPLLEPILMETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIAAEME 729

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+ RF+ GA + GI+K+ A  IF+L+AKFA+YGFNKSHAAAYA++SY TAW+K ++PVE
Sbjct: 730  VQRARFVDGAVERGINKSHAGTIFDLVAKFANYGFNKSHAAAYALVSYHTAWLKANHPVE 789

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+AASMTL++ N EK+  + Q+AR+  I+I PPS+N   V F V D +I Y++ AIKGVG
Sbjct: 790  FMAASMTLDLGNTEKLGDYRQEARRMKIEIEPPSINRGQVYFDVADGKILYAMGAIKGVG 849

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 HI+E   DKPF SL DF  R+  K LN+R LE+LV AGA D    +R ++ + LD
Sbjct: 850  EQAVEHIVEVRGDKPFKSLGDFARRISPKALNKRTLENLVAAGAFDELEPNRARVFEGLD 909

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             I   AQ  E+N+T   + +F        + + L++     +  + + E   +GFY S H
Sbjct: 910  RIMGLAQRTEENKTLGQDELFGGCDS--EEPLQLDEVHGWTNEEKLQREHSAIGFYLSAH 967

Query: 967  PLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            P+D Y  +L KM ++ + +    ++   ++ RLA  VVS Q++KT+ G+R+G V  S+  
Sbjct: 968  PIDEYAAVLEKMRVQPWSQFSEAVKKGASHGRLAGTVVSMQERKTKTGNRMGIVRLSDAT 1027

Query: 1025 KEYEANFF 1032
             +YEA  F
Sbjct: 1028 GQYEALLF 1035


>gi|322831603|ref|YP_004211630.1| DNA polymerase III, subunit alpha [Rahnella sp. Y9602]
 gi|321166804|gb|ADW72503.1| DNA polymerase III, alpha subunit [Rahnella sp. Y9602]
          Length = 1160

 Score = 1104 bits (2855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1045 (39%), Positives = 606/1045 (57%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G   +  ++   A+   PA+AITD  NL   ++F   A  AG++
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKVGPLVKCAASLGMPALAITDFTNLCGLVKFYGAAHGAGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG            +  Q +     +  + +L    +GYQ L  L+SR Y    G   
Sbjct: 64   PIIGA----------DLNVQSEILGDELAQLTVLAMNNQGYQNLTLLISRAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              + L WL E+  EGLI+L+G   G + +     +     + L  +++ F DR Y+ L R
Sbjct: 114  PIVDLEWLAEL-NEGLILLSGARMGDVGKFLTRGNDLQVSQCLDFYQQYFPDRYYLELIR 172

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
              R  +       V LA    LP+VATN+  F+   D++AH++ +A+     +    RP 
Sbjct: 173  TGRAEEENYLHAAVALATERGLPVVATNDVRFMVPTDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T   Y+++  EM  +F DLPEAL+N+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYTSQQYMRSEDEMCELFEDLPEALQNSVEIAKRCNVTIRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVEKSKIGLEERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNSVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDRVIDHVSEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L++++++LEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKSLIDMARQLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 527  PLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKAGEAPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PD  ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDSFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKNPVEMAKQRGGFEEGAKSRGIDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D     Y + AIKGVG      I+EA  +   F  L D C+R D KKLN+R+LE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFKELFDLCARADVKKLNKRILEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F    +     + +         
Sbjct: 887  AFDRLGPHRAALMSSLSDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEKSYANVMPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                + E+  LG Y +GHP+  Y   + +  G +  ++   T RG       +V++ +  
Sbjct: 947  QTVLDGERETLGLYLTGHPITQYLKEIERYGGGQRLKDMHPTERGKMTVAVGLVLAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|319425768|gb|ADV53842.1| DNA polymerase III, alpha subunit [Shewanella putrefaciens 200]
          Length = 1157

 Score = 1104 bits (2855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1045 (40%), Positives = 610/1045 (58%), Gaps = 36/1045 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      AG
Sbjct: 2    SDPRFVHLRVHSDFSMSDGVAKVKPILAQVEALGMAAVALTDQNNFCGLVKFYSGCHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG    +          Q         ++ ++     GYQ L +++S+ YL  Q  
Sbjct: 62   IKPIIGADFWM----------QVPGFEGEFCALTIIAMNNVGYQNLTQIISQAYLRGQVA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V I   WL     EG+++L+G   G I +A    ++   E     ++  F +R ++ L
Sbjct: 112  GRVVIDQEWLLTY-NEGILLLSGAKEGDIGKALLKGNNTQVESLCEFYQTHFAERYFLEL 170

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R     V LA    +P+VATN  +FL  ED++AH++ +A+     ++   R
Sbjct: 171  IRTGRPDEERYLHMAVALAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   YL++  EM  +F+D+P AL NTVEIA+RC+  ++++   LP F   +     
Sbjct: 231  PKKYSEQQYLRSEEEMCELFADIPAALSNTVEIAKRCNVTIRLYEYFLPNFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L + +  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -SIEDFLVDCSKKGLEERLAFLFPDPQVRAERRGEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  EPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +           V
Sbjct: 525  FAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   +  RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP +F+AA M+ +MDN +KI     +  +  + ++PP VN     F 
Sbjct: 765  ALVSYQTLWLKTHYPSQFMAAVMSADMDNTDKIVTLVDECERMGLTLIPPDVNKGLFKFT 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+ A
Sbjct: 825  VDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICA 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            GALD  G  R  ++ +L    + A    K +     ++F        D K    + +   
Sbjct: 885  GALDSLGPHRASMMATLPEAMRAADQHAKAQAIGQHDMFGLLNSEPEDSKQQFVECTPWP 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +  
Sbjct: 945  DKIWLEGERETLGLYLTGHPINQYLKELKYYTSGRLKDVHPTERGKTVKAAGLVVATRVM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GS++G +T  + +   E   F
Sbjct: 1005 LTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|292489212|ref|YP_003532099.1| DNA polymerase III subunit alpha [Erwinia amylovora CFBP1430]
 gi|292898554|ref|YP_003537923.1| DNA polymerase III subunit alpha [Erwinia amylovora ATCC 49946]
 gi|291198402|emb|CBJ45509.1| DNA polymerase III alpha subunit [Erwinia amylovora ATCC 49946]
 gi|291554646|emb|CBA22332.1| DNA polymerase III alpha subunit [Erwinia amylovora CFBP1430]
          Length = 1160

 Score = 1103 bits (2854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1045 (40%), Positives = 613/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G    + ++   A+   PAI ITD  NL   ++F   A   G++
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTSPLVKYAASIGMPAIGITDFTNLCGLVKFYGTAHGQGMK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   ++  +               +  I +L +  EGYQ L  L+SR Y    G   
Sbjct: 64   PIIGADFNVSSE----------AMGDELTQITVLAADNEGYQNLTLLISRAYQRGYGPAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   +GLI+L+GG  G + +     +     + L  +++ F DR Y+ L R
Sbjct: 114  PTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNHTQVRECLSFYQQHFPDRYYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V+LA    +P+VATN   FL+E D++AH++ +A+     +    RP 
Sbjct: 173  TGRPDEEAYLHAAVELAVAQGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL++  EM  +FSD+PEALEN+VEIARRC+  +++    LP+F   E       
Sbjct: 233  HYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGEYFLPQFPTGEM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  ++  GLE RL         +     DY QRLD ELNVI +M F GYFLIV +F
Sbjct: 288  TEDFLVVESKKGLEERLEFLFPDEKVRAERRADYDQRLDIELNVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDLVIEHVAEMYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   D PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +        +D+
Sbjct: 527  PLYCDENGDHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEAPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM +Q+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKNPVEMARQRGGFEDGAKARGIDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECLRMGLKVLPPDINSGLYQFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D     Y + AIKGVG      I+EA  +   F  L D C+R D+KK+NRR+LE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ +L +  K A    K       ++F    +     + +         
Sbjct: 887  AFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSDVKPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             ++ + E+  LG Y +GHP++ Y   + +  G +  ++   T RG     A +VV+ +  
Sbjct: 947  QIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGLVVAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|49475735|ref|YP_033776.1| DNA polymerase III subunit alpha [Bartonella henselae str. Houston-1]
 gi|49238542|emb|CAF27778.1| DNA polymerase III alpha subunit [Bartonella henselae str. Houston-1]
          Length = 1162

 Score = 1103 bits (2854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 586/1030 (56%), Positives = 745/1030 (72%), Gaps = 8/1030 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS+YSLLEGAL +  I+    +D  PA+AITDTNNLF ALEFSQ   + GIQ
Sbjct: 16   PHFIHLRVHSAYSLLEGALKIPQIIQHAISDHTPAVAITDTNNLFGALEFSQYCFSYGIQ 75

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFP-TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQL ID  D        K   P    SIVLL ++  GY  L+ LVSR YL      
Sbjct: 76   PIIGCQLTIDFGDGNDNPRLVKWRHPSDFCSIVLLAASEIGYAHLVRLVSRAYLDKCDTD 135

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL     EG+I+LTGG  GPI+ +      + A +RL+  KK+F DRLYV LQ
Sbjct: 136  PPHIKADWLLS-HNEGIIVLTGGRGGPINFSLAEERKERAIERLIYLKKIFDDRLYVELQ 194

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  +D+  E+ +++LAY +E+PLVATN + FL+ E YEAHD LMAVA   +VS  DR R
Sbjct: 195  RHGSFDQKVEAALIELAYAYEIPLVATNEAFFLNREGYEAHDALMAVAEGQIVSNPDRKR 254

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQK 305
            VTPDHYLK++ EMV++FSDLPEALEN+VEIA RC        PILPRFIE+  D     +
Sbjct: 255  VTPDHYLKSQEEMVALFSDLPEALENSVEIALRCHTATPTRKPILPRFIEQSVDLNFTLE 314

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E+ EL N+A AGL++RL    +A+GY   DY QRLD+E++VI RM+FSGYFLIV+DFI+
Sbjct: 315  AEDRELLNQAKAGLKMRLKTIGLAEGYTITDYEQRLDYEISVITRMQFSGYFLIVSDFIK 374

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK ++IPVGPGRGSGAGS+ AYAL ITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+
Sbjct: 375  WAKVHDIPVGPGRGSGAGSLVAYALMITDVDPLRFSLLFERFLNPDRVSMPDFDIDFCQE 434

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI YVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QV+ L KL+P  P  
Sbjct: 435  RREEVIHYVQKKYGRDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVEYLTKLVPAAPGS 494

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             V L  AI D+ +F E +  DP++ R L+I+ +LEGLYRHASTHAAGIVIGDRPLS+L+P
Sbjct: 495  QVELADAIKDEPKFEEEKKKDPAIGRTLDIALQLEGLYRHASTHAAGIVIGDRPLSELIP 554

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++G+K++LS IP +
Sbjct: 555  MYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARKGIKINLSNIPLN 614

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY ++    T+GIFQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++NI +YN R
Sbjct: 615  DETTYAMMARGETVGIFQVESSGMRKALIGMKPDRIEDIIALVALYRPGPMENIPIYNAR 674

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKKI  E
Sbjct: 675  KHGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKIHTE 734

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+ RF++GA   G+ K  A  IF+LLAKFADYGFNKSHAAAYA+ISYQTA+MK H+P
Sbjct: 735  MQKQRTRFVNGAVAGGVDKDQADIIFDLLAKFADYGFNKSHAAAYAIISYQTAYMKAHHP 794

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMT +M N EK+  F ++A +  I+++ P V T    F+VGDN IYYSLAAIKG
Sbjct: 795  VEFLAASMTYDMMNTEKLNDFRREALRLGIKVIAPCVQTSHRVFEVGDNCIYYSLAAIKG 854

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG     HI+    +K F  LEDFC R+D + +N+R +ESLV AGA DCF  +R  LL S
Sbjct: 855  VGEAVVDHIVACRGNKVFKDLEDFCERIDPRIVNKRAMESLVCAGAFDCFNIAREVLLAS 914

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L  +   A  +  + ++   +IF        + + L + S  +   +   E + +GFYFS
Sbjct: 915  LGTLHARALRILDDNSSGQTDIFGI-TSVLKEPLILSQASPWSLDEKLHREFQAIGFYFS 973

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPLD Y+ IL K  I+ +      ++      RLA  VV+KQ +KT+ G ++G V FS+
Sbjct: 974  AHPLDEYQAILVKKRIQNWVNFANAVKAGATAARLAGTVVAKQVRKTKSGKKMGIVHFSD 1033

Query: 1023 PAKEYEANFF 1032
             + +YEA  F
Sbjct: 1034 TSGQYEAVLF 1043


>gi|310764935|gb|ADP09885.1| DNA polymerase III subunit alpha [Erwinia sp. Ejp617]
          Length = 1160

 Score = 1103 bits (2854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1045 (40%), Positives = 614/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G     +++   A+   PAI ITD  NL   ++F   A   G++
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTGSLVKYAASMGMPAIGITDFTNLCGLVKFYGTAHGQGMK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   ++  +               +  I +L +  +GYQ L  L+SR Y    G   
Sbjct: 64   PIIGADFNVSSE----------AMGDELTQITVLAADNDGYQNLTLLISRAYQRGYGPAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   +GLI+L+GG  G + +     +     + L  +++ F DR Y+ L R
Sbjct: 114  PTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNPTQVNECLNFYQQYFPDRYYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V+LA    +P+VATN   FL+E D++AH++ +A+     +    RP 
Sbjct: 173  TGRPDEETYLHAAVELAVARGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL++  EM  +FSD+PEALEN+VEIARRC+  +++    LP+F   E       
Sbjct: 233  HYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGEYFLPQFPTGEM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD ELNVI +M F GYFLIV +F
Sbjct: 288  TEDFLVVKSKQGLEERLEFLFPDEKLRAVRRAEYDERLDIELNVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDLVIEHVAEMYGRKAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   D PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +        +D+
Sbjct: 527  PLYCDENGDHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEAPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKNPVEMAKQRGGFEDGAKARGVDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA  +   F  L D C+R D+KK+NRR+LE L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ +L +  K A    K       ++F    +     + +         
Sbjct: 887  AFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSDVKPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             ++ + E+  LG Y +GHP++ Y   + +  G +  ++   T RG     A +VV+ +  
Sbjct: 947  QIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGLVVAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|302337842|ref|YP_003803048.1| DNA polymerase III subunit alpha [Spirochaeta smaragdinae DSM 11293]
 gi|301635027|gb|ADK80454.1| DNA polymerase III, alpha subunit [Spirochaeta smaragdinae DSM 11293]
          Length = 1141

 Score = 1103 bits (2854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1030 (39%), Positives = 607/1030 (58%), Gaps = 22/1030 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL  H+ YSLL+GA  ++ +++K  +     +AITD  N+F  L F +   A  I 
Sbjct: 2    PDFVHLHNHTDYSLLDGAAPIDKMVEKAVSFGMKHLAITDHGNMFGVLRFYKACKAHEIN 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P+IGC++ +           G         +VLL   +EGY+ LI+L SR Y        
Sbjct: 62   PLIGCEVYVAPGSR--HVKNGSEKGNRYQHLVLLARNSEGYKNLIQLCSRGYTEG-FYYK 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
             RI    L++    GL  L+   +G I        ++ AE++   +++LF  +  ++ +Q
Sbjct: 119  PRIDDELLEQY-NGGLTALSACLAGAIPSMIMNGKAEEAEQKANYYRELFGKEHFFLEMQ 177

Query: 188  RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++     ++V+++    +PLVATN+  +L   D  A D+L+ +  +    ++DR 
Sbjct: 178  DHGIPEQKTVNKELVRISKKTGIPLVATNDIHYLDRADASAQDILLCIGTNRKRREQDRM 237

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQ 304
            R   D  Y+K++ EM   F ++PEAL NT+ +A +C+  + +  PILP + I  E +++ 
Sbjct: 238  RFHSDQFYMKSQEEMAETFREIPEALSNTLRVAEQCNLEIDLPGPILPEYEIPPEFENLG 297

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR+    GL+ R             +  QR + EL +I  M F GYFLIV DFI
Sbjct: 298  ----DYLRHLTFEGLKKRYPS-------LTDEIVQRAEKELGIINSMHFPGYFLIVWDFI 346

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AK+++IPVGPGRGSGAGS+ AYALTITDIDPL++ LLFERFLNP+R+SMPDFD+DFC 
Sbjct: 347  HYAKQHDIPVGPGRGSGAGSIVAYALTITDIDPLKYQLLFERFLNPERVSMPDFDVDFCF 406

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YV  KYG ++V QIITFG+L+AKA ++DV R L +P+++ D++ KLIPND  
Sbjct: 407  ERRQEVIDYVNRKYGKDKVGQIITFGTLKAKAVVKDVARVLDIPFAEADKISKLIPNDLK 466

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  + + +E          L++ +++LEGL RHASTHAAG+VIG + L++ VP
Sbjct: 467  ITID-KALEQEPQLKELMDQGGVYGELIDAARRLEGLSRHASTHAAGVVIGRKALTEYVP 525

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +YRD ++    TQF M  +E+ GL+K DFLGLKTLTL++ + D + +R    D+  +P D
Sbjct: 526  LYRDSKTGSISTQFTMDQLEECGLVKMDFLGLKTLTLIKHTEDLIHRRDKDFDIERVPED 585

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  T+ LL    +  +FQ ESSGM+  L+   P  IED+IAL +LYRPGP+  I  Y   
Sbjct: 586  DPATFTLLGEGKSTCVFQFESSGMQNILKQAHPTSIEDLIALNALYRPGPMQYIPQYIAS 645

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+++I    P ++ +LK T GVI+YQEQVMQ+AQ++ G+SL +AD+LRRAMGKK  +E
Sbjct: 646  KSGEQEIRYPDPSLEEVLKPTYGVIVYQEQVMQVAQIIGGFSLGKADILRRAMGKKKVKE 705

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M K K  FI GA K G +K  A  IFE+L  FA YGFNKSHAAAY+V++Y+TA++K +YP
Sbjct: 706  MAKMKLEFIEGAVKKGHTKEHADEIFEMLVPFAGYGFNKSHAAAYSVVAYKTAYLKANYP 765

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF+AA++T E++N +K+  +  +A+   I ++PP VN    +F V D +I Y L  IK 
Sbjct: 766  AEFMAANLTNEINNPDKLAFYIGEAKTMGIDLLPPEVNISEKNFSVSDGKIVYGLIGIKN 825

Query: 845  VGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VGT     I+ A  +  PF+ + D   RVD K +NR+VLE+L+  GALD FG +R  LL+
Sbjct: 826  VGTNAVEEIVRAREEGGPFEDIFDLLDRVDMKTVNRKVLETLIECGALDSFGINRSTLLE 885

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFY 962
            +L+ + +     ++       ++F          K  L              E+ +LGFY
Sbjct: 886  NLERVMEVVSKKKEGEQFGQSSLFDDGNEEEMPWKTDLTPAEPLPKMEVLRRERELLGFY 945

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            FSGHP+D +K   +             I      L AMV S +   T+KG  + ++   +
Sbjct: 946  FSGHPMDDFKDRWKSAVNIDLSRPDRFIPERTYTLIAMVTSLRTIITKKGRPMAFLQLED 1005

Query: 1023 PAKEYEANFF 1032
               + E+  F
Sbjct: 1006 YNGKIESVVF 1015


>gi|259907557|ref|YP_002647913.1| DNA polymerase III subunit alpha [Erwinia pyrifoliae Ep1/96]
 gi|224963179|emb|CAX54663.1| DNA polymerase III subunit alpha [Erwinia pyrifoliae Ep1/96]
 gi|283477397|emb|CAY73313.1| DNA polymerase III alpha subunit [Erwinia pyrifoliae DSM 12163]
          Length = 1160

 Score = 1103 bits (2854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1045 (40%), Positives = 613/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G     +++   A+   PAI ITD  NL   ++F   A   G++
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKTGSLVKYAASMGMPAIGITDFTNLCGLVKFYGTAHGQGMK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG   ++  +               +  I +L +  +GYQ L  L+SR Y    G   
Sbjct: 64   PIIGADFNVSSE----------AMGDELTQITVLAADNDGYQNLTLLISRAYQRGYGPAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   +GLI+L+GG  G + +     +     + L  +++ F DR Y+ L R
Sbjct: 114  PTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNPTQVNECLNFYQQYFPDRYYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V+LA    +P+VATN   FL+E D++AH++ +A+     +    RP 
Sbjct: 173  TGRPDEETYLHAAVELAVARGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL++  EM  +FSD+PEALEN+VEIARRC+  +++    LP+F   E       
Sbjct: 233  HYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGEYFLPQFPTGEM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD ELNVI +M F GYFLIV +F
Sbjct: 288  TEDFLVVKSKQGLEERLEFLFPDEKLRAVRRAEYDERLDIELNVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDLVIEHVAEMYGRKAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   D PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +        +D+
Sbjct: 527  PLYCDENGDHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEAPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKNPVEMAKQRGGFEDGAKARGVDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D     Y + AIKGVG      I+EA  +   F  L D C+R D+KK+NRR+LE L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ +L +  K A    K       ++F    +     + +         
Sbjct: 887  AFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSDVKPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             ++ + E+  LG Y +GHP++ Y   + +  G +  ++   T RG     A +VV+ +  
Sbjct: 947  QIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGLVVAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|294140019|ref|YP_003555997.1| DNA polymerase III subunit alpha [Shewanella violacea DSS12]
 gi|293326488|dbj|BAJ01219.1| DNA polymerase III, alpha subunit [Shewanella violacea DSS12]
          Length = 1157

 Score = 1103 bits (2854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1045 (39%), Positives = 602/1045 (57%), Gaps = 36/1045 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              PSFVHL+VHS YS+ +G   +  IL K+     PA+A+TD  NL   ++F      AG
Sbjct: 2    SDPSFVHLRVHSDYSMSDGLAKVKPILAKVTELGMPAVALTDQTNLCGLVKFYGACHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG    + +    K           + S+ ++    +GY  L  L+S  YL     
Sbjct: 62   VKPIIGADFWVRVPGFDK----------DLCSVTVIAMDNDGYLNLTLLISDAYLRGHIN 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL +  + GL++L+GG  G + RA    +    +  +  ++  F DR Y+ L
Sbjct: 112  DRAVIDQEWLIKY-SNGLLLLSGGRHGDVGRALLKGNKPQVDSLVEFYQTHFPDRYYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN  +F S E ++AH++ +A++    ++   R
Sbjct: 171  LRTGRPDEETYLHLAVELAQEKGLPVVATNQVVFNSPEFFDAHEIRVAISDGFTLADPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   Y K+  EM ++F D+PEA+ NTVEIA+RCS  +++    LP F   E     
Sbjct: 231  PKKYSDQQYFKSSEEMCALFEDIPEAIANTVEIAKRCSVTVRLGEYFLPNFPTGEL---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L   +  GLE RL         +      Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -SIEDFLVKVSEDGLENRLEFLFPDPEVRAQKRPAYDERLDIELKVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW K  +IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID
Sbjct: 346  EFIQWGKDQDIPIGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDID 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ K++P 
Sbjct: 406  FCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMVPA 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A   +   +E+   D  V  L+++ + LEG+ R+A  HA G+VI    ++ 
Sbjct: 466  EPGMTL-AKAFEVEPALQESYDGDEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +        V
Sbjct: 525  FAPIYCDSEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKRKALGKEPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD +++ LL    T  +FQLES GM+  ++ +QPD  ED+IALV+L+RPGP+ 
Sbjct: 585  RIESIPLDDKKSFKLLQRYETTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   +  RK+G+E++        H  +  +L+ T G+I+YQEQVMQIAQ+L+GYSL  
Sbjct: 645  SGMVDNFIERKHGREEVSFPDAEYQHESLKWVLEPTYGIILYQEQVMQIAQVLAGYSLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NGI   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRGTFEEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA M+ +MDN +KI     +  +    ++PP VN   + F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVILVDECERMGQPLLPPDVNKGLLKFN 824

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V  + +I Y + AIKGVG      I+ A  D PF  L DFC+RVD KKLN+R++E L+ A
Sbjct: 825  VDEEGKIVYGIGAIKGVGDGPVESILAARKDGPFKDLFDFCARVDLKKLNKRIMEKLICA 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            GALD  G  R  ++ +L    + A    K       ++F        D K    + +   
Sbjct: 885  GALDSLGPHRAAMMATLPAAVRAADQNAKAEAIGQHDMFGLLNSDTEDIKQQFVQCTPWP 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +V++ +  
Sbjct: 945  DKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVIATRVM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GS++G VT  + +   E   F
Sbjct: 1005 MTKRGSKMGLVTLDDKSARLEVMLF 1029


>gi|238754792|ref|ZP_04616143.1| DNA polymerase III subunit alpha [Yersinia ruckeri ATCC 29473]
 gi|238706952|gb|EEP99318.1| DNA polymerase III subunit alpha [Yersinia ruckeri ATCC 29473]
          Length = 1173

 Score = 1103 bits (2853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1045 (39%), Positives = 601/1045 (57%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+A+TD  NL   ++F   A  AGI+
Sbjct: 17   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAVTDFTNLCGLVKFYGSAHGAGIK 76

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q       +  + +L    +GYQ L  L+S  Y    G   
Sbjct: 77   PIIGADFCV----------QSDMLGDELAQLTVLAKNNQGYQNLTLLISEAYQRGYGPAG 126

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   EGLI+L+GG  G + +     +    ++ L  +++ F D  Y+ L R
Sbjct: 127  PTIDRDWLIK-HREGLILLSGGRMGDVGKFLVRGNQSQVDQCLDFYQEYFPDSYYLELIR 185

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP 
Sbjct: 186  TGRPDEENYLHAAVALATARSLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 245

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 246  NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 300

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 301  TEDFLVEKSRQGLEERLEFLFPDPEVRAQKRPEYDERLDIELKVINQMGFPGYFLIVMEF 360

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 361  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 420

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P +P
Sbjct: 421  MEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPEP 480

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 481  GMTLE-KAFEAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 539

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 540  PLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDI 599

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 600  ASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 659

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E +        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD
Sbjct: 660  MVDNFIDRKHGREALSYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 719

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 720  MLRRAMGKKNPAEMAKQRSVFEDGAKSQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 779

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 780  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 839

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D     Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE LV +G
Sbjct: 840  DEGEIVYGIGAIKGVGEGPIEAMLEARNEGGYFKDLFDLCARVDTKKLNRRILEKLVMSG 899

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL    K A    K       ++F          + +         
Sbjct: 900  AFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMFGVLADAPEQVEQSYANVPHWQE 959

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V + +  
Sbjct: 960  QVVLDGERETLGLYLTGHPITQYLKEIERYTGGLRLKDMHPTDRGKMTTAVGLVTAARVM 1019

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1020 VTKRGNRIGICTLDDRSGRLEVMLF 1044


>gi|328953644|ref|YP_004370978.1| DNA polymerase III, alpha subunit [Desulfobacca acetoxidans DSM
            11109]
 gi|328453968|gb|AEB09797.1| DNA polymerase III, alpha subunit [Desulfobacca acetoxidans DSM
            11109]
          Length = 1150

 Score = 1103 bits (2853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1035 (40%), Positives = 624/1035 (60%), Gaps = 22/1035 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL VH++YSLL+GA+ LN+++D   + + PA+AITD  N+F  +EF  KA  AG+
Sbjct: 3    TPGFVHLHVHTAYSLLDGAIRLNDLIDTALSMEMPAVAITDHGNMFGVVEFYTKAEKAGL 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC+L +     L+ + +    +     +VLL     GYQ L++LVS+  L      
Sbjct: 63   KPIIGCELYVAPGSRLEKSGKKGDNY----HLVLLAENLTGYQNLLKLVSKANLEG-FYY 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+    L +   EGLI L+    G +      +  + AE     + ++F  R Y+ +Q
Sbjct: 118  KPRVDRELLAD-HAEGLIALSACLHGVVAAHVVADDLKTAEIAAREYGEIFPGRFYLEVQ 176

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   ++ +  + ++++A    LP+VATN+  +L  ED  AHDVL+ +     ++   R 
Sbjct: 177  ANDLTEQQKVNAALLEMAPRLGLPVVATNDCHYLRPEDARAHDVLLCIQTGKTINTTKRM 236

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R + D  + K+  +M + F D P+ LE ++EIA RC   L +     P F  +      +
Sbjct: 237  RFSTDQLFFKSPVQMAAAFPDRPDLLEASLEIANRCQLELPLGEFHFPVFPLENG----Q 292

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVAD 362
              E +L+ +A  GLE RL Q  ++  +  +    YR R++ EL ++ +M F+GYFL+VAD
Sbjct: 293  TMEAQLQQEARRGLEHRLHQWQLSGAWPMEKIQHYRARMEEELALLCQMGFAGYFLVVAD 352

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI++A+K +IPVGPGRGS AGS+ A AL ITD+DP+ + L FERFLNP+R SMPD D+DF
Sbjct: 353  FIRYARKRHIPVGPGRGSAAGSLVACALEITDLDPIAYGLFFERFLNPERKSMPDIDVDF 412

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR E+I YV  KYG E V QIITFGS++ +  +RDVGRAL +PY + D++ KL+P+ 
Sbjct: 413  CFERRGEIIDYVARKYGKEHVGQIITFGSMKTRQVIRDVGRALDLPYPEADKIAKLVPDV 472

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +   A+  + R REAR AD ++  +L I+  LEGL RHASTHAAG+VI D+PL   
Sbjct: 473  LKINLRT-ALEKEPRLREARDADENIREVLTIAAALEGLPRHASTHAAGVVIADKPLWCY 531

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            +P+Y+  + +  +TQF MK +EK GLIKFDFLGL+TLT+L+ +   +  Q+    D   +
Sbjct: 532  LPLYKGNKDE-IITQFEMKGVEKVGLIKFDFLGLRTLTVLETAAQIVRRQKDKNFDYRQL 590

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
            P +D  T+ LL +  T G+FQLESSGMR+ L  ++P C ED+IALV+LYRPGP+++ +V 
Sbjct: 591  PLEDAATFELLRSGNTAGVFQLESSGMREKLVQLRPTCFEDLIALVALYRPGPLESGMVD 650

Query: 661  -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RK+G+  +    P ++P+LKET G+I+YQEQVMQIA ++SGYS+ EAD+LRRAMGK
Sbjct: 651  DFIKRKHGELNVTYELPELEPILKETYGIILYQEQVMQIAGIISGYSMGEADILRRAMGK 710

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    M  QKERF SGA   G     A  +F L+ KFA YGFNKSH+AAYA I+YQTA++
Sbjct: 711  KEPAVMAAQKERFCSGAVSRGFPLAKAEKLFHLIEKFAGYGFNKSHSAAYAYITYQTAYL 770

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYP+EFLAA  T E+++   + K  Q+AR+  I ++PPS+N    DF V  ++I + L
Sbjct: 771  KAHYPLEFLAALFTSEINSPTTLTKHIQEAREDGIVLLPPSLNASERDFTVEGSQIRFGL 830

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            A +K VG    + I+EA    PF SL +F  R +  K+N++VLESL+ AGALD  G +R 
Sbjct: 831  AGVKNVGDNAIKAILEARKKGPFISLGNFLERANQTKVNKKVLESLIQAGALDFLGINRA 890

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
            +L   ++   + AQ   K +  +  ++F    E         L      +   +   E+ 
Sbjct: 891  RLFGGVEAALERAQVALKLQAARQMDMFGGLGEADLGEGDDWLPPVPEWDEQEKLAREKE 950

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             LG Y SGHPL  Y+  L+ +     ++         + L  ++V+ ++  T+KG R+ +
Sbjct: 951  ALGIYLSGHPLAKYRQQLQALTDLTIDDLAEKPENGPVLLGGLIVAVKETMTKKGERMAF 1010

Query: 1018 VTFSEPAKEYEANFF 1032
             T  +     E   F
Sbjct: 1011 ATLEDQVGSVEVVVF 1025


>gi|78044608|ref|YP_359983.1| DNA polymerase III DnaE [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996723|gb|ABB15622.1| DNA polymerase III, alpha subunit [Carboxydothermus hydrogenoformans
            Z-2901]
          Length = 1116

 Score = 1103 bits (2853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1030 (38%), Positives = 597/1030 (57%), Gaps = 36/1030 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  HS YSLL+GA  + +++ +    + PA+A+TD  NLF  +EF ++A A GI+P
Sbjct: 2    SFVHLHTHSCYSLLDGAGKIKDLVGRAVELKMPALALTDHGNLFGVIEFYKEAKAQGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G ++ +  +     T +       +  +VLL     GYQ L+ LVSR Y         
Sbjct: 62   ILGVEVYVAPRTRFDKTPKI---DDQLTHLVLLAKDRTGYQNLLRLVSRSYTEG-YYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L E  ++GLI L+   +G I         + A +    ++ +F  +  Y+ LQ 
Sbjct: 118  RVDKQLLAE-NSQGLIALSSCLAGEIPELILSGQREKAREVAGIYRDIFGKENFYLELQY 176

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     +++ L+    +PLVATN+  ++ +E  + HDVL+A+     ++   R +
Sbjct: 177  HGISEQKVVNRELIALSKQLNIPLVATNDVHYILKEHAKTHDVLLAIQTGKSINDPGRMK 236

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               +  YLK   EM  IF +LP+AL+NT+ IA +C+   +    +LP F   E     K 
Sbjct: 237  FPTEEFYLKTPYEMELIFGELPDALKNTLNIAEQCNLEFEFGRYLLPDFPVPEG----KT 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+     GL  R            ++ + RL  EL +I +M FSGYFLIV DFI++
Sbjct: 293  PAQYLKELCFQGLYKRYPN-------PGEEVKTRLLHELKIIEQMGFSGYFLIVWDFIRY 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I VGPGRGS AGS+ AY L ITDIDPL++ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 346  AREKGIMVGPGRGSAAGSLVAYTLEITDIDPLKYGLLFERFLNPERVSMPDIDVDFCFER 405

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI Y+  KYG +RVAQIITFG++ AKAA+RDVGRAL  PYS+VD++ KLIPN     
Sbjct: 406  RQEVIDYLYQKYGEDRVAQIITFGTMAAKAAVRDVGRALDWPYSEVDKIAKLIPNVLGIT 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +AI      +     +P V  LL++++++EG+ RHAS HAAG+VI    + + +P++
Sbjct: 466  LE-EAIETTPELKTLYQNNPKVRELLDLARQIEGMPRHASVHAAGLVIAPEEIDKHIPLF 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
            +     +  TQF    +E+ GL+K D LGL+TLT+++K+LDF+  Q G +++L  IP DD
Sbjct: 525  K-TSEGVVTTQFEKDTVEELGLLKIDLLGLRTLTVIEKALDFIKKQTGKEINLKDIPLDD 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
             +TY LL    T+G+FQLES GMRQ L+ ++P  IED+IALV+LYRPGP+ + +V  + N
Sbjct: 584  EKTYKLLGEGDTVGVFQLESQGMRQILKELKPTSIEDLIALVALYRPGPLGSGMVEDFIN 643

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++G+  +   HP ++P+L+ET GVI+YQEQVM IA +L+G+SL EAD+LRRAMGKK  E
Sbjct: 644  RRHGRVPVEYPHPDLEPILRETYGVIVYQEQVMLIASVLAGFSLGEADLLRRAMGKKKPE 703

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +   K  FI  +   G  +  A  IF L+  FA YGFNKSH+AAYA ++Y TAW+K ++
Sbjct: 704  IIAALKNDFIERSVARGYPREKAEEIFNLIEYFAGYGFNKSHSAAYAFVAYYTAWLKANF 763

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PV FLAA +    DN++K+  + +D ++  I+++PP +N   VDF +    I + LAA+K
Sbjct: 764  PVAFLAALLISVKDNLDKVTVYAEDCQRRGIKVLPPDINLSEVDFTISGQEIRFGLAAVK 823

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
             VG   A  I+E     PF    DF  R+D K +N+RV+ESL+ AGA   FG++R  LL 
Sbjct: 824  NVGEAAAAKIIEERQKGPFRDFNDFLHRIDKKTVNKRVIESLIKAGAFASFGFNRKTLLN 883

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            +LD+  ++     K        +   +    +D+  L      +       E+  LG Y 
Sbjct: 884  NLDDALEF---YSKKSNGVQLTL--GDFLPEADRYNLRLEEEFSKLELLRMEKESLGLYL 938

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            +GHPL   +  ++K                 I   A++   ++  TR+G  + +      
Sbjct: 939  TGHPLAGLRSFIQKHCNL-------KENKEKIYYPAILAEIKRTVTRRGEPMAFALLEGL 991

Query: 1024 AKEYEANFFP 1033
             +  EA  FP
Sbjct: 992  NQTVEAVIFP 1001


>gi|253988140|ref|YP_003039496.1| DNA polymerase III subunit alpha [Photorhabdus asymbiotica subsp.
            asymbiotica ATCC 43949]
 gi|253779590|emb|CAQ82751.1| dna polymerase iii alpha subunit [Photorhabdus asymbiotica]
          Length = 1160

 Score = 1103 bits (2852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1045 (40%), Positives = 612/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G    + ++ K+A    PA AITD  NL   + F   A  AG++
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTSPLVKKVAQLGMPAFAITDFTNLCGLVRFYGSAHGAGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          + +       ++ +L     GY  L  L+S  Y    G   
Sbjct: 64   PIIGADFYM----------ESELLGDEYANLTILARNNTGYHNLTLLISEAYQQGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL     EGLI+L+GG  G + +     +  + ++ L  +++ F D  Y+ L R
Sbjct: 114  PTIKQKWLVS-RKEGLILLSGGRMGDVGKFLLRGNRAMVDQCLEFYQEHFPDCYYLELIR 172

Query: 189  HRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                 D       V LA    LP+VATN+  F+ +ED++AH++ +A+     ++   RP 
Sbjct: 173  TGRVDDENYLHAAVALATEKNLPVVATNDVCFIDKEDFDAHEIRVAIHDGYTLADPKRPK 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP+F   E       
Sbjct: 233  NYSPQQYLRSEQEMCELFSDIPEALENSVEIAKRCNVTIRLGEYFLPQFPTGEM-----S 287

Query: 307  EENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             EN L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TENYLIEKSKQGLEERLTFLYPDPEVRAEKRPEYDERLDVELRVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDLVIDHVADIYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFVAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 527  PLYCDPEGLNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D++++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLNDNKSFDMLQRAETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDIQWQHESLQPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA K GI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEEGAKKLGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLIDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA   D  F  L D C+RVD+KKLNRRV+E L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARKKDGYFRELFDLCARVDTKKLNRRVMEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL++  K A    K       ++F    +     + +    S    
Sbjct: 887  AFDRLGPHRAALMSSLEDALKAADQHAKAEAIGQTDMFGVLAEAPEEVERSYANVSQWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP+  Y   + +       ++   T RG    +  +V++ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPITRYLKEIERYTNGLRLKDVNPTPRGQVTTVVGLVLASKVI 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 MTKRGNRIGLCTLDDRSGRLEVMLF 1031


>gi|218778784|ref|YP_002430102.1| DNA polymerase III, alpha subunit [Desulfatibacillum alkenivorans
            AK-01]
 gi|218760168|gb|ACL02634.1| DNA polymerase III, alpha subunit [Desulfatibacillum alkenivorans
            AK-01]
          Length = 1168

 Score = 1103 bits (2852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1033 (39%), Positives = 609/1033 (58%), Gaps = 22/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YSLL+GA+ L+ ++++       A AITD   +F  LEF +KA +  I+P
Sbjct: 3    DFVHLHVHTQYSLLDGAIRLDALVNQCKEFGMDACAITDHGTMFGILEFYEKAKSKDIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  +  +     T   K        +VLL    +GY+ L  L +            
Sbjct: 63   IIGCECYVARKSMEDKTPMDKDNR----HLVLLAENNQGYENLCRLATLA-QRKGFYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI    L+E  ++GLI L+    G I         ++AE+  L +K LF  D  Y+ +Q 
Sbjct: 118  RIDKKALEE-HSKGLICLSACLHGEIPMYISDGQMKLAEESALYYKNLFGPDHFYLEIQN 176

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++     ++ +LA   ++PLV TN+  +L  +D +AH+VL+ +  +  +   +R +
Sbjct: 177  NGLPEQEEMNQKLAELAEKLDIPLVGTNDCHYLRAKDAKAHEVLLCIQTNKTIHDTNRFK 236

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  YLK+  EM+  F   P A +NTV+IA  C+    +     P+F  +E     K 
Sbjct: 237  FRTDQLYLKSPQEMIEYFKGFPGATDNTVKIAEMCNVEFDLSTFHFPQFPTEEG----KT 292

Query: 307  EENELRNKAVAGLEVRL-AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            E   L      G   R+ A  A+      + Y +RL +EL VI  M F GYFLIV+DFIQ
Sbjct: 293  EAEILTQMTWDGFHKRMDAIKAVNPAVDEEKYLERLKYELGVIQDMGFPGYFLIVSDFIQ 352

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            W+K+N IPVGPGRGS AGS+ AYAL ITD+DPL   L+FERFLNP R SMPD D+DFC  
Sbjct: 353  WSKRNGIPVGPGRGSAAGSLVAYALEITDLDPLEHKLIFERFLNPGRKSMPDIDVDFCIL 412

Query: 426  RRDEVIRYVQNKYGH-ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             R+    YV  KYG  + V+QI TFGS+ A+A +RDVGRA+ +P  +VD + KLIP  P 
Sbjct: 413  GRERTFNYVVEKYGGGDYVSQITTFGSMNARAVVRDVGRAMAIPLGEVDVIAKLIPEAPK 472

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  + +  E     P +  L+E++Q LEGL RHASTHAAG+VI D+PL + +P
Sbjct: 473  MTLK-KAMEQEPKLLEIMKDKPEIAELIEVAQVLEGLSRHASTHAAGVVIADKPLVEYLP 531

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPF 603
            +Y   + ++ VTQF+MK +EK GL+KFDFLGL+ LT++  ++  +  Q     DL  +  
Sbjct: 532  LYEGKKGEV-VTQFDMKRVEKIGLVKFDFLGLRNLTVIDNAIKLIEGQGKTPPDLMHLDV 590

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
             D  TY+LL+   T G+FQLESSGM+  L  ++P+C ED++A+V+LYRPGP+++ +V  +
Sbjct: 591  TDKATYNLLSRGDTTGVFQLESSGMKDLLARLKPECFEDVVAVVALYRPGPLNSGMVDDF 650

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK+G   +    P ++P+LK+T GVI+YQEQVMQIA  L+ YS+SEAD LR+AMGKKI
Sbjct: 651  VKRKHGDIPVTYALPELEPILKDTYGVIVYQEQVMQIAAALASYSMSEADDLRKAMGKKI 710

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E+M +Q+ RF+ G  +N +    A  +F L+ KF +YGFNKSH+AAYA++S+QTA++KT
Sbjct: 711  AEKMAQQRIRFMDGCKENNVDLKKAEALFNLMEKFGEYGFNKSHSAAYALVSFQTAYLKT 770

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            H+ VEF+A+ MT EMDN + + KF  + R  +I+++PP VNT  V F V + +I Y +AA
Sbjct: 771  HFQVEFMASLMTSEMDNTDNVLKFMSECRDHDIEVLPPDVNTSSVSFTVLEGKIVYGMAA 830

Query: 842  IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IKGVG      I+E   A+ PF+++ D C RVD +++N+RVLESLV AGA D  G  R Q
Sbjct: 831  IKGVGQGAVEAIVEERKANGPFENIFDLCERVDLRRVNKRVLESLVKAGAFDSTGAKRSQ 890

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L+  L++   + Q + K + +    +F   +   +    L      +  ++   E+  LG
Sbjct: 891  LMAVLESAIDHGQRISKEKNDPQMGLFGAIE-MPTITPALPDIEEWDDQLKLSYEKEALG 949

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            F+ +GHPL  Y+ IL K               + +R+  M++S +   T+KG  + ++T 
Sbjct: 950  FFLTGHPLGKYEDILIKFANADTLTLPEMPDKSAVRVGGMILSTKNLVTKKGDPMAFITL 1009

Query: 1021 SEPAKEYEANFFP 1033
             +     E   FP
Sbjct: 1010 EDMKGSVEVVVFP 1022


>gi|24373212|ref|NP_717255.1| DNA polymerase III subunit alpha [Shewanella oneidensis MR-1]
 gi|24347436|gb|AAN54699.1|AE015610_3 DNA polymerase III, alpha subunit [Shewanella oneidensis MR-1]
          Length = 1158

 Score = 1103 bits (2852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1045 (40%), Positives = 613/1045 (58%), Gaps = 36/1045 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NNL   ++F      AG
Sbjct: 2    SDPRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG    +          Q         ++ ++    EGYQ L +++S+ YL  Q +
Sbjct: 62   IKPIIGADFWM----------QVPGFEDEFCAVTIIAMDNEGYQNLTQIISQAYLRGQVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V I   WL      G+++L+GG  G I +A    ++   E     +++ F  R ++ L
Sbjct: 112  GRVVIDQEWLITY-NPGILLLSGGKEGDIGKALLKGNNTQVESLCEFYQQHFEGRYFLEL 170

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R     V +A    +P+VATN  +FL  ED+EAH++ +A+     ++   R
Sbjct: 171  LRTGRPDEERYLHMAVGVAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTLADPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   YL++  EM  +F+D+P AL NTVEIA+RC+  ++++   LP F   +     
Sbjct: 231  PKKYSEQQYLRSEDEMCELFADIPAALANTVEIAKRCNVTIRLNEYFLPNFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L + +  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -SIEDFLVDCSKKGLEERLAFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  EPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +  VK      
Sbjct: 525  FSPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRSPI 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   +  RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + I+PP VN     F 
Sbjct: 765  ALVSYQTLWLKTHFPPQFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFKFT 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+ A
Sbjct: 825  VDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFTDLFDFCARIDLKKLNKRVIEKLICA 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            GALD  G  R  ++ +L      A    K       ++F        D K    + +   
Sbjct: 885  GALDALGPHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVECTPWP 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +  
Sbjct: 945  DKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATRVM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GS++G +T  + +   E   F
Sbjct: 1005 LTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|84389777|ref|ZP_00991329.1| DNA polymerase III subunit alpha [Vibrio splendidus 12B01]
 gi|84376878|gb|EAP93752.1| DNA polymerase III subunit alpha [Vibrio splendidus 12B01]
          Length = 1159

 Score = 1102 bits (2851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1046 (39%), Positives = 605/1046 (57%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A   G
Sbjct: 2    SDPKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHGCG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG    +          Q       +  + ++ +  +GY  L  L+S+ YL    +
Sbjct: 62   VKPIIGADFLM----------QSPDFGDELTKLTVIATNNKGYNNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E   EGLI+L+G   G I +A    + ++    +  +K  F DR Y+ L
Sbjct: 112  HQPVIDKEWLIE-HAEGLILLSGAKEGEIGKALLKGNRELVASSVEFYKTHFADRFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        ++LA   +LP+VATN  +F+SE+ ++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHFALELAEQEDLPVVATNEVVFISEDLFDAHEIRVAIHDGFTMVDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +   YL++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSSQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RLA        +     +Y +RL  EL V+  M F GYFLIV 
Sbjct: 286  LAIEDFLIKKSEEGLERRLAFLFPDEKVRAERRPEYDERLKIELEVVNNMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID
Sbjct: 346  EFIQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDID 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +    E    D  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFLAEPALPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYADAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKEGKEPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  +++LL    T  +FQLES GM+  ++ +QPD  EDIIALV+L+RPGP+ 
Sbjct: 585  RIESIPLDDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDSFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E +        H  +   L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 645  SGMVDNFIDRKHGREAVSYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRGTFKEGAEANGVDGELSMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVIGLVDECFRMKLKLLPPDINSGLYRFN 824

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDEDGAIVYGIGAIKGVGEGPIEAIIEARNKGGYFKDLFDFCARLDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GALD  G  R  ++ SL +  K A       +    ++F          +    +    
Sbjct: 885  SGALDRLGPHRAAMMASLKDAVKAASQHHHAESFGQSDMFGVLTDAPEEVEHKYTQVPKW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ + 
Sbjct: 945  PEKVWLEGERETLGLYLTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|308048684|ref|YP_003912250.1| DNA polymerase III, alpha subunit [Ferrimonas balearica DSM 9799]
 gi|307630874|gb|ADN75176.1| DNA polymerase III, alpha subunit [Ferrimonas balearica DSM 9799]
          Length = 1165

 Score = 1102 bits (2851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1053 (40%), Positives = 604/1053 (57%), Gaps = 44/1053 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL+VHS +S+++G   +  +L ++A    PA+A+TD  NL   ++F   A  +G
Sbjct: 2    SEPKFIHLRVHSDFSMVDGLAKVGPLLKRVAELGMPAVALTDQTNLCGLVKFYSGAHGSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG    +                     +V+L     GY  L EL+SR YL     
Sbjct: 62   IKPIIGADFWMLSP----------LQGDEQSRLVVLAMNNTGYANLTELISRAYLRGHVD 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL+E+G EGLI+L+G   G + +A    +  +A +    ++  F DR YV L
Sbjct: 112  HRPVIDREWLEELG-EGLILLSGAKDGELGKALVKGNLAMAREIASFYQTHFPDRYYVEL 170

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R  R  D       V  A    LPLVATN  +FL +ED+E H++ + +     +    R
Sbjct: 171  HRTGRADDESYLHSAVDFADEMGLPLVATNEVVFLQKEDFEFHEIRVCIHDGYPLDDARR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +   YL++  EM  +F+D+PEAL+N+VEIA+RC+  +++    LP F   +     
Sbjct: 231  PRLYSEQQYLRSEEEMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPDFPTGDL---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + E+ L   +  GLE RL         +      Y +RL  EL VI  M F GYFLIV 
Sbjct: 287  -KIEDFLVKVSEEGLEERLEFLFPDPEERAAKRPAYDERLKIELEVINNMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +    YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KLIP 
Sbjct: 406  FCMDRRDEVIEHTAELYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPFGFVDRISKLIPG 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + + +E    D  V  L++I++KLEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEVEPQLQEVYDGDEEVRTLIDIARKLEGTTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++Q +LD L     A+    V
Sbjct: 525  FAPLYCDDEGKHPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWALDMLNPALEAKGKAPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++ LL    T  +FQLES GM++ +  ++PDC ED+IALV+L+RPGP+ 
Sbjct: 585  RIESIPLDDPRSFELLQRSETTAVFQLESRGMKELISRLKPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREAISYPDETWQHESLKPILEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT WMKTH+P  F+AA M+ +MDN +K+     +  +  + ++PP VN     F 
Sbjct: 765  ALVSYQTLWMKTHFPSYFMAAVMSADMDNTDKVVTLVDECNRMGLPVLPPDVNQGLYKFN 824

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V +     Y + AIKGVG      I+ A      F  L DFC+RVD KK+NRR +E L+ 
Sbjct: 825  VNEKEEIVYGIGAIKGVGEGPVDEILAARERGGKFLDLFDFCNRVDLKKVNRRTIEKLIL 884

Query: 888  AGALDCFG-------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-IT 939
            AGA+D  G         R  L+ +L+   K A    +N     +++F            +
Sbjct: 885  AGAMDNLGPRLPDGAPHRASLMATLEEAMKSAAQNARNLAQGMDDLFGTLTPEPEQAHHS 944

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
              K +  +     + E+  LG Y +GHP++ Y   L+K      ++   T RG   R A 
Sbjct: 945  FVKVAPWSDKEWLDGERETLGLYLTGHPINQYLKELKKFTAGRLKDVSPTGRGKTTRAAG 1004

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V++ +   T++GS++G  T  + +   E   F
Sbjct: 1005 LVIASRIMITKRGSKMGIFTLDDKSGRLEVMLF 1037


>gi|300724779|ref|YP_003714104.1| DNA polymerase III subunit alpha [Xenorhabdus nematophila ATCC 19061]
 gi|297631321|emb|CBJ92016.1| DNA polymerase III, alpha subunit [Xenorhabdus nematophila ATCC
            19061]
          Length = 1160

 Score = 1102 bits (2851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1045 (39%), Positives = 613/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G      ++ K+A    PA AITD  NL   ++F   A +AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTGPLVKKVAKLGMPAFAITDFTNLCGLVKFYGSAHSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          +          + +L    EGYQ L  L+S  Y    G   
Sbjct: 64   PIIGADFYV----------ESDLLGDEYAHLTVLACNNEGYQNLTLLISESYQKGYGAVG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL++  + GLI+L+GG  G + +     +  + E+ L  +++ F +  Y+ L R
Sbjct: 114  PTIKREWLEKY-SAGLILLSGGRMGDVGKFLLRGNRAMVEQCLDFYQEHFPNSYYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V+LA    LP+VATN+  FL  ED++AH++ +A+     ++   RP 
Sbjct: 173  TGRLDEENYLHAAVELAAEKNLPVVATNDVCFLESEDFDAHEIRVAIHDGYTMADPKRPK 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL++  EM  +FSD+PEAL+N+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYLRSEQEMCELFSDIPEALQNSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y  RLD ELNVI +M F GYFLIV +F
Sbjct: 288  TEDFLVEKSKQGLEERLEFLYPDPEIRAQKRPEYDDRLDIELNVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERISMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDQVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFIAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +      +    +D+
Sbjct: 527  PIYCDPEGQNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMVNARRAKKDLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDQKSFDMLQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F +G+ K G++  +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKQPEEMAKQRSVFEAGSIKQGVNGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D     Y + AIKGVG      I+EA      F  L D C+RVD+KK+NRRV+E L+ +G
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIEARQKAGHFKELFDLCARVDTKKINRRVMEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL++  K A    K       ++F    +     +           
Sbjct: 887  AFDRLGPHRAALMSSLEDAFKAADQHAKAEATGQTDMFGVLAEKPEQVEHAYASTPKWPD 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP+  Y   + +       ++   T RG    +  +V++ +  
Sbjct: 947  QVVLDGERETLGLYLTGHPITSYLKEIERYTNGMRLKDVNPTPRGQVTTVVGLVLASKIL 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 TTKRGNRIGISTLDDRSGRLEIMLF 1031


>gi|312114721|ref|YP_004012317.1| DNA polymerase III subunit alpha [Rhodomicrobium vannielii ATCC
            17100]
 gi|311219850|gb|ADP71218.1| DNA polymerase III, alpha subunit [Rhodomicrobium vannielii ATCC
            17100]
          Length = 1151

 Score = 1102 bits (2851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 541/1037 (52%), Positives = 717/1037 (69%), Gaps = 12/1037 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F+HL VHS+YSLLEGAL +  ++   AAD QPA+AITD NNLF ALEFS+    
Sbjct: 1    MTK-PGFIHLHVHSAYSLLEGALPVKALIKAAAADGQPALAITDRNNLFGALEFSEYLSG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             GIQPIIGC L +        T + G+ P     +IVLL   AEGY  L+ L SR +L  
Sbjct: 60   EGIQPIIGCALTLAFPAPADETPRPGQRPDAHSGTIVLLAKDAEGYGNLMRLSSRAFLDS 119

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                +  + + +L E    GLI L+GG  GP DRAF   ++ +AE RL T  + FG+R Y
Sbjct: 120  GDGSNPHVEVEFLVE-HAGGLIALSGGPDGPADRAFAAGNAAIAEARLATLAEAFGNRFY 178

Query: 184  VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            V +QRH    +R  E Q+++ AY + +PLVATN + F     +EAHD L+ +A    V++
Sbjct: 179  VEIQRHGLARERAVEPQLLRWAYDNGVPLVATNEAYFPKRAVFEAHDALLCIAEGRYVAE 238

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             DR R++PDH+LK +++MV +F+DLPEA+ NT+EIA+RC+F  +   PILP+F+    +D
Sbjct: 239  DDRRRLSPDHWLKPQADMVKLFADLPEAVANTIEIAQRCAFRPRPRKPILPQFVAGS-ED 297

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIA-KGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              + E  ELR +A+AGLE RLA            +Y +RL+FEL+VI RMKF GYFLIV+
Sbjct: 298  THEAEAAELRRQAIAGLEHRLATIPAHFHAASKDEYFKRLEFELDVITRMKFPGYFLIVS 357

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK   IPVGPGRGSGAGSV A++LTITD+DP+RF LLFERFLNP+R+SMPDFDID
Sbjct: 358  DFIKWAKAQGIPVGPGRGSGAGSVVAWSLTITDLDPIRFGLLFERFLNPERVSMPDFDID 417

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRRDEVI+YV+ KYG  RVAQIIT+G LQA+A LRDVGR LQMPY QVDRLCKL+PN
Sbjct: 418  FCQDRRDEVIQYVRAKYGSNRVAQIITYGKLQARAVLRDVGRVLQMPYGQVDRLCKLVPN 477

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PV+L +AI  + + +EAR  +  V +LL+ +QKLEGLYRHASTHAAG+VIGDR L 
Sbjct: 478  NPANPVTLAEAIEGEPQLQEARDREEIVAQLLDTAQKLEGLYRHASTHAAGVVIGDRDLV 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVP+YRD +SD+ VTQFNMKW+E+AGL+KFDFLGLKTLT+LQK+   L + G  +DL  
Sbjct: 538  ELVPLYRDPKSDMLVTQFNMKWVEQAGLVKFDFLGLKTLTVLQKACALLEKAGRPIDLGH 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L    T G+FQLES+GMR+AL  ++PD   DIIA+V+LYRPGP+DNI  
Sbjct: 598  LPLDDRPTYEMLAKGDTGGVFQLESTGMREALRKLKPDRFGDIIAMVALYRPGPMDNIET 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y NRK+G E    +HPL  P+L+ET GVIIYQEQVMQ+AQ+LSGYSL EAD+LRRAMGKK
Sbjct: 658  YVNRKHGIEVPDYLHPLAKPILEETYGVIIYQEQVMQLAQVLSGYSLGEADLLRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            IK EMD Q  RF+ GA +  I +  A  IFEL+AKFA YGFNKSHAAAYA+I+YQTA++K
Sbjct: 718  IKAEMDAQGARFVKGALEKDIPEARARYIFELVAKFAGYGFNKSHAAAYALIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSL 839
             ++  EF+AASMTL+M N +K+  F ++A++  + I+PPSVN   V+F+  GDN I Y+L
Sbjct: 778  ANHAQEFIAASMTLDMANTDKLYAFTREAKRNGLAILPPSVNKSAVEFEPEGDNAIRYAL 837

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AA+K +G   A HI+EA  DKP+  L DF  R++ K LN+R +E+L  AGA +    +R 
Sbjct: 838  AALKNMGHAAAAHIVEARGDKPYRDLADFMLRINPKALNKRGIETLNAAGAFEDMETNRA 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENEQRV 958
            ++ ++LD + ++     ++R    E++F     G+ + ++ L      +     ENE   
Sbjct: 898  KVAKNLDRLVEFGSKAAEDRARGQEDMFGGGIAGSPAPRLDLADAPEWSLVETLENELGA 957

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRGN-NIRLAAMVVSKQQKKTRKGSRI 1015
             GFY SGHPLD +   L +M +  + +  A     G    RLAA V  +Q +K + G+R 
Sbjct: 958  AGFYLSGHPLDDFTDQLARMNVLKWSDFSARVQAHGRAESRLAATVTYRQDRKAKSGNRF 1017

Query: 1016 GWVTFSEPAKEYEANFF 1032
             +  FS+P  ++EA  F
Sbjct: 1018 AFAGFSDPTGQFEAVIF 1034


>gi|295100819|emb|CBK98364.1| DNA polymerase III catalytic subunit, DnaE type [Faecalibacterium
            prausnitzii L2-6]
          Length = 1170

 Score = 1102 bits (2850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1054 (35%), Positives = 591/1054 (56%), Gaps = 40/1054 (3%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +T+   +   FVHL +H+ YSLL+GA  ++ ++D++    Q AIAITD   ++  ++F +
Sbjct: 4    VTEGNRQGRDFVHLHIHTEYSLLDGACRIDQLMDRVKECGQSAIAITDHGVMYGCVQFYK 63

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AGI+P+IGC++ +  +      N+          ++LL     GY+ LI++VS  +
Sbjct: 64   AAKKAGIKPVIGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLIKMVSAAF 119

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-G 179
            +        R+    L++   EGLI L+   +G I +A      + A+   L ++ LF  
Sbjct: 120  VEG-FYSKPRVDKQLLEQYH-EGLICLSACLAGEIPQAILAGDYERAKSTALWYQDLFGK 177

Query: 180  DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               Y+ LQ H    D     Q+++LA    +P+ ATN+S +L ++D +   +L+ +    
Sbjct: 178  GNYYIELQDHGLEEDTIVLPQLIKLARETGIPMAATNDSHYLRKDDAKMQSILLCIQTGK 237

Query: 239  VVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             +   DR    T + Y+K   EM  +F+ +PEA  NT +IA +C+F        +P +  
Sbjct: 238  TIQDADRMEFRTDEFYVKTTDEMYELFAMVPEACANTQKIADQCNFDFDFGHTKIPYYKA 297

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                D Q             GLE R            Q  + RL +E+ V+  M ++ Y+
Sbjct: 298  PNGMDNQ----EFFEKLCWDGLERRYGSDV------PQSNKDRLTYEIGVVKSMGYTNYY 347

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV D+I +AK   IPVGPGRGSGAGS+ AY + ITDIDP+R++L+FERFLNP+R+SMPD
Sbjct: 348  LIVWDYINYAKSQGIPVGPGRGSGAGSIAAYCVGITDIDPIRYNLIFERFLNPERVSMPD 407

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC +RR EVI YV  KYG + VAQI+TFG++ A+ A+RDVGR + MPY  VD + K
Sbjct: 408  FDVDFCYERRQEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGMPYQSVDVVAK 467

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
             +P +    +  +A+      +    +DP V  L++ + K+EG+ RHASTHAAG+VI   
Sbjct: 468  QVPMELKMTLK-RALEVSPELKRMYDSDPQVTELIDTALKVEGMPRHASTHAAGVVITPE 526

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            P    +P+       LPVTQFNM  IE+ GL+K DFLGL+TLT+++ +   + ++     
Sbjct: 527  PTDYYLPL--ATNDGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIRDAEAAVQKKDPSFS 584

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  + +DD  TY +L    T G+FQLESSGM+Q L G+QP  +ED+IAL+SLYRPGP+D+
Sbjct: 585  IQKLDYDDAATYKMLGQGETEGVFQLESSGMKQVLVGLQPQNLEDVIALISLYRPGPMDS 644

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y   ++  +KI    P +  +L  T G I+YQEQVMQI + L+G+S  +AD +RRAM
Sbjct: 645  IPTYLRNRHEPDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRAM 704

Query: 718  GKKIKEEMDKQKERFISGASK----------NGISKTIAVNIFELLAKFADYGFNKSHAA 767
             KK    M+ ++E F+ G ++          NGIS+ +A  I++ ++ FA Y FNKSHAA
Sbjct: 705  SKKKHAVMEAEREHFVHGCTEPGHECPGCVANGISEEVANEIYDEMSSFASYAFNKSHAA 764

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
             YA +++QTA++K HYP EF+AA +T  +DN +K+ ++  +  +  ++++PP VN     
Sbjct: 765  CYAYVAFQTAYLKCHYPSEFMAALLTSVLDNTDKVIEYSGECARLGLKVLPPDVNISNGG 824

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            F   + +I + L A+K VG      ++E   +KP+ SL DFC R+   +LNRR +E L+ 
Sbjct: 825  FTADNGKIRFGLNAVKNVGRNLIERVVEERKEKPYSSLYDFCKRMHGTELNRRAVECLIK 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKF 943
            AGA D  G +R  L++++D I K  +   +       ++F       +   +D   ++ F
Sbjct: 885  AGAFDSMGVNRHSLVEAVDGIIKSVESDSRRNLEGQLDLFSVMSGESQTADTDSYEIKPF 944

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA----TIRGNNIRLAA 999
               + +   + E+ V G Y SGHPLD Y+    +      +E        + GN++R+  
Sbjct: 945  PEYSHTELLQQEKEVSGLYLSGHPLDAYREQSARFASNSIKELTGEDAHKLDGNHVRIVC 1004

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             VV  +   T+  + + + +  +     E   FP
Sbjct: 1005 TVVKNRMMTTKSNTMMAFTSVEDLTGTMEVIVFP 1038


>gi|238759934|ref|ZP_04621088.1| DNA polymerase III subunit alpha [Yersinia aldovae ATCC 35236]
 gi|238701841|gb|EEP94404.1| DNA polymerase III subunit alpha [Yersinia aldovae ATCC 35236]
          Length = 1171

 Score = 1102 bits (2850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1045 (39%), Positives = 606/1045 (57%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A +AGI+
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHSAGIK 74

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    +GYQ L  L+S  Y    G   
Sbjct: 75   PIIGADFYV----------QSEILGDELAHLTVLARNNDGYQNLTLLISEAYQRGYGAAG 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   EGLI+L+GG  G + +     +    +  L  +++ F D  Y+ L R
Sbjct: 125  PIIDRDWLIK-HKEGLILLSGGRMGDVGKFMLRGNQAQVDLCLDFYQEHFPDSYYLELIR 183

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP 
Sbjct: 184  TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 243

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 244  NYSPQQFMRDEEQMCELFADIPEALFNSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 298

Query: 307  EENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE R   L      +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 299  TEDFLVEKSKQGLEERMELLFPDPEERAQKRPEYDERLEIELKVINQMGFPGYFLIVMEF 358

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 359  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 418

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 419  MEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 478

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 479  GMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 537

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 538  PLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDI 597

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 598  ASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 657

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD
Sbjct: 658  MVDNFIDRKHGREAISYPDIEWQHECLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 717

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA + GI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 718  MLRRAMGKKNPAEMAKQRSVFEDGAKEQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 777

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 778  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 837

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D     Y + AIKGVG      +++A  +   F  L D C+RVD+KKLNRR+LE LV +G
Sbjct: 838  DEGEIVYGIGAIKGVGEAPIEAMLDARKEGGYFKELFDLCARVDTKKLNRRILEKLVMSG 897

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL    K A    K       ++F          + +     +   
Sbjct: 898  AFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMFGVLADAPEQVEQSYANVPLWQE 957

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             +  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V++ +  
Sbjct: 958  QIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTTAVGLVIAARVM 1017

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1018 VTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|146292466|ref|YP_001182890.1| DNA polymerase III subunit alpha [Shewanella putrefaciens CN-32]
 gi|145564156|gb|ABP75091.1| DNA polymerase III, alpha subunit [Shewanella putrefaciens CN-32]
          Length = 1157

 Score = 1102 bits (2850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1045 (40%), Positives = 609/1045 (58%), Gaps = 36/1045 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      AG
Sbjct: 2    SDPRFVHLRVHSDFSMSDGVAKVKPILAQVEALGMAAVALTDQNNFCGLVKFYSGCHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG    +          Q         ++ ++     GYQ L +++S+ YL  Q  
Sbjct: 62   IKPIIGADFWM----------QVPGFEGEFCALTIIAMNNVGYQNLTQIISQAYLRGQVA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V I   WL     EG+++L+G   G I +A    ++   E     ++  F +R ++ L
Sbjct: 112  GRVVIDQEWLLTY-NEGILLLSGAKEGDIGKALLKGNNTQVESLCEFYQTHFAERYFLEL 170

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R     V LA     P+VATN  +FL  ED++AH++ +A+     ++   R
Sbjct: 171  IRTGRPDEERYLHMAVVLAQEKGFPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   YL++  EM  +F+D+P AL NTVEIA+RC+  ++++   LP F   +     
Sbjct: 231  PKKYSEQQYLRSEEEMCELFADIPAALSNTVEIAKRCNVTIRLYEYFLPNFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L + +  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -SIEDFLVDCSKKGLEERLAFLFPDPQVRAERRGEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  EPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +           V
Sbjct: 525  FAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   +  RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP +F+AA M+ +MDN +KI     +  +  + ++PP VN     F 
Sbjct: 765  ALVSYQTLWLKTHYPSQFMAAVMSADMDNTDKIVTLVDECERMGLTLIPPDVNKGLFKFT 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+ A
Sbjct: 825  VDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICA 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            GALD  G  R  ++ +L    + A    K +     ++F        D K    + +   
Sbjct: 885  GALDSLGPHRASMMATLPEAMRAADQHAKAQAIGQHDMFGLLNSEPEDSKQQFVECTPWP 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +  
Sbjct: 945  DKIWLEGERETLGLYLTGHPINQYLKELKYYTSGRLKDVHPTERGKTVKAAGLVVATRVM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GS++G +T  + +   E   F
Sbjct: 1005 LTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|319898845|ref|YP_004158938.1| DNA polymerase III alpha subunit [Bartonella clarridgeiae 73]
 gi|319402809|emb|CBI76360.1| DNA polymerase III alpha subunit [Bartonella clarridgeiae 73]
          Length = 1162

 Score = 1102 bits (2850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 588/1033 (56%), Positives = 756/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            +  P F+HL+VHS+YSLLEGAL +  I+    +D  PAIAITDTNNLF ALEFSQ   A 
Sbjct: 13   DSLPRFIHLRVHSAYSLLEGALKIKQIIQHAISDHMPAIAITDTNNLFGALEFSQYCFAD 72

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFP-TVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            GIQPIIGCQL ID  D    ++  K   P    SIVL  ++  GY  L+ LVSR YL   
Sbjct: 73   GIQPIIGCQLAIDFDDENCNSSLAKLRHPSDYSSIVLFAASETGYAHLVRLVSRAYLDKN 132

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I    L     EG+I LTGG SGPI+ A   +  + A +RL   KK+FGDRLYV
Sbjct: 133  DNDLPHIKADLLL-THHEGIIALTGGRSGPINLALAEDRKERAVERLTYLKKIFGDRLYV 191

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQRH  YDR  E+ +++LAYT+E+PLVATN + FL++E Y AHD LMAVA   VVS  D
Sbjct: 192  ELQRHGSYDRKVEAVLIELAYTYEIPLVATNEAFFLNKEGYAAHDALMAVAEGQVVSDPD 251

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R RVTPDHYLK++ EM+S+FSDLPEALEN+VEIA RC     +  PILPRFIE+  D   
Sbjct: 252  RKRVTPDHYLKSQDEMISLFSDLPEALENSVEIALRCHAYAPIRKPILPRFIEQSADTSS 311

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            + + E  EL N+A AGL++RL    +A+GY   DY QRL++E+++I RM+FSGYFLIV+D
Sbjct: 312  VLESEAKELLNQAEAGLKMRLETIGLAEGYTIADYEQRLNYEISIITRMQFSGYFLIVSD 371

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 372  FIKWAKAHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 431

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ+RR+EVIRYVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QVD L KL+P  
Sbjct: 432  CQERREEVIRYVQKKYGCDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVPAT 491

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   V L QAI D+ +F E +  DP + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 492  PGSNVELAQAIIDEPKFEEEKKKDPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSE 551

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMK++E++GL+KFDFLGLKTLT+L+ ++DF+A++G KVDLS I
Sbjct: 552  LVPMYRDPRSDMPVTQFNMKYVEQSGLVKFDFLGLKTLTVLKMAVDFVARKGTKVDLSHI 611

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P +D  TY +++   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  Y
Sbjct: 612  PLNDEVTYAMMSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTY 671

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RK+ +E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKKI
Sbjct: 672  NIRKHKEEEITSIHPKIDHLVKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKI 731

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             +EM +Q+ RF+SGA   GI K  A  IF+LLAKFADYGFNKSHA AYA++SY TA+MK 
Sbjct: 732  HKEMQEQRTRFVSGAVDGGIDKDQANVIFDLLAKFADYGFNKSHATAYAIVSYHTAYMKA 791

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            H+PVEFLAASMT +M N +K+  F ++A +  I+++ P V T    F+VG+N IYYSL+A
Sbjct: 792  HHPVEFLAASMTYDMTNTDKLNDFWREALRLGIEVIAPCVQTSHRIFEVGENCIYYSLSA 851

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +KGVG     HI+    DKPF  LEDFC R+D + +N+R +ESL++AGA DCF  +R  L
Sbjct: 852  VKGVGDVVVDHIVACRGDKPFKDLEDFCERIDPRIVNKRAMESLIYAGAFDCFNVAREVL 911

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L SL  +   A  +  N ++   +IF    G     I L + S  + + +   E + +GF
Sbjct: 912  LASLVTLNARALRILDNNSSGQIDIFGMIGGLKEPLI-LSQASPWSPAEKLHYEFQAIGF 970

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            YFS HPL  Y+ +L K  ++ ++   A+++G     RLA  +V+++ +KTR G ++G + 
Sbjct: 971  YFSAHPLSEYQDVLIKKRVQTWKNFAASVKGGATAARLAGTIVARKIRKTRSGKKMGVIQ 1030

Query: 1020 FSEPAKEYEANFF 1032
            FS+ + +YEA  F
Sbjct: 1031 FSDTSGQYEAVIF 1043


>gi|157962689|ref|YP_001502723.1| DNA polymerase III subunit alpha [Shewanella pealeana ATCC 700345]
 gi|157847689|gb|ABV88188.1| DNA polymerase III, alpha subunit [Shewanella pealeana ATCC 700345]
          Length = 1177

 Score = 1102 bits (2850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1048 (39%), Positives = 605/1048 (57%), Gaps = 37/1048 (3%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            ++   P FVHL+VHS +S+ +G   +  I+ K+A    PA+A+TD  N+   ++F +   
Sbjct: 20   HIMSEPRFVHLRVHSDFSMSDGLSKVKPIIAKVAELGMPAVALTDQTNMCGLVKFYEACH 79

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
              G++PIIG    + +             F    SI  L     GY  L  L+S  YL  
Sbjct: 80   GNGVKPIIGTDFWVKVP-----------GFDEFCSITALAMDNTGYSNLTLLISDAYLRG 128

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                   I   WL +  +EGLI+L+G   G + RA    +    +  +  +K  F DR Y
Sbjct: 129  NINDKAVIDHEWLAKY-SEGLILLSGAKDGDVGRALLKENQNQVDSLIEFYKTHFPDRYY 187

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L R    D  R     + LA   +LP+VATN  +F   E ++AH++ +A+     ++ 
Sbjct: 188  LELLRTGRPDEERYLHMAIALAEQKDLPVVATNQVVFNKPEQFDAHEIRVAIYDGFTLAD 247

Query: 243  KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RP+  +   Y K+  EM  +F D+PEA++NTVEIA+RC+  +++H   LP F   +  
Sbjct: 248  PRRPKKYSDQQYFKSSDEMCELFEDIPEAIQNTVEIAKRCNATVRLHEYFLPNFPTGDL- 306

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L + +  GLE RL         +     +Y +RLD EL VI +M F GYFL
Sbjct: 307  ----TIEDFLVDVSEKGLEERLEFLFPDPEVRAEKRPEYDERLDIELKVINQMGFPGYFL 362

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW K N+IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDF
Sbjct: 363  IVMEFIQWGKDNDIPIGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDF 422

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC DRRDEVI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ K+
Sbjct: 423  DVDFCMDRRDEVIDHVADLYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKM 482

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP +P   +  +A   +   +E+   D  V  L+++ + LEG+ R+A  HA G+VI    
Sbjct: 483  IPAEPGMTL-AKAFEVEPGLQESYDGDEDVKDLIDMCRILEGVTRNAGKHAGGVVIAPTK 541

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRG 593
            ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +         
Sbjct: 542  ITDFSPIYCDTEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMVNSVKDKNGE 601

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +V +  I   D + + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPG
Sbjct: 602  ERVRIESISLTDPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPG 661

Query: 654  PIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +   +  RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+L+GY+
Sbjct: 662  PLQSGMVDNFIERKHGREEVSYPDAEYQHESLKELLSPTYGIILYQEQVMQIAQVLAGYT 721

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F +GA +NG+   +++ IF+L+ KFA YGFNKSH+
Sbjct: 722  LGGADMLRRAMGKKKPEEMAKQRGTFEAGAIENGVDGPLSMKIFDLVEKFAGYGFNKSHS 781

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+KTHYP +F+AA M+ +MDN +KI     +  +  + ++PP VN    
Sbjct: 782  AAYALVSYQTLWLKTHYPAQFMAAVMSADMDNTDKIVTLVDECERMGMPLLPPDVNKGLF 841

Query: 827  DFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             F V D+  I Y + A+KGVG      I++A  + PF  L DFC+R+D KKLNRRV+E L
Sbjct: 842  RFTVDDDLNIVYGIGAVKGVGEGPVDSILKARENGPFIDLFDFCARIDLKKLNRRVIEKL 901

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + AGALD  G  R  ++ +L    + A    K       ++F        D K    + +
Sbjct: 902  ICAGALDNLGPHRAAMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECT 961

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ 
Sbjct: 962  PWPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVVAT 1021

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++GS++G VT  + +   E   F
Sbjct: 1022 RVMMTKRGSKMGLVTLDDKSARLEVMLF 1049


>gi|86146874|ref|ZP_01065193.1| DNA polymerase III subunit alpha [Vibrio sp. MED222]
 gi|218710303|ref|YP_002417924.1| DNA polymerase III subunit alpha [Vibrio splendidus LGP32]
 gi|85835326|gb|EAQ53465.1| DNA polymerase III subunit alpha [Vibrio sp. MED222]
 gi|218323322|emb|CAV19499.1| DNA polymerase III alpha subunit [Vibrio splendidus LGP32]
          Length = 1159

 Score = 1102 bits (2850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1046 (39%), Positives = 608/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A   G
Sbjct: 2    SDPKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHGCG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG    +          Q       +  + ++ ++ +GY  L  L+S+ YL    +
Sbjct: 62   VKPIIGADFLM----------QSPDFGDELTKLTVIATSNKGYNNLTLLISKAYLRGHVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E   EGLI+L+G   G I +A    + ++    +  +K  F DR Y+ L
Sbjct: 112  HQPVIDKEWLIE-HAEGLILLSGAKEGEIGKALLKGNRELVASSVEFYKTHFADRFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        ++LA   +LP+VATN  +F+SE+ ++AH++ +A+     +    R
Sbjct: 171  IRTGRTDEESYLHFALELAEQEDLPVVATNEVVFISEDLFDAHEIRVAIHDGFTMVDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +P  YL++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSPQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RLA        +     +Y +RL  EL V+  M F GYFLIV 
Sbjct: 286  LAIEDFLIKKSEEGLERRLAFLFPDEKVRAERRPEYDERLKIELEVVNNMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID
Sbjct: 346  EFIQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDID 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +    E    D  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFLAEPALPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYADAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLAKEGKDPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  +++LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIESIPLDDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E +        H  +   L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 645  SGMVDNFIDRKHGREAVSYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRGTFKEGAEANGVDGELSMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVIGLVDECFRMKLKLLPPDINSGLYRFN 824

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDEDGAIVYGIGAIKGVGEGPIEAIIEARNKGGYFKDLFDFCARLDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GALD  G  R  ++ SL +  K A       +    ++F          +    +    
Sbjct: 885  SGALDRLGPHRAAMMASLKDAVKAASQHHHAESFGQSDMFGVLTDAPEEVEHKYTQVPKW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ + 
Sbjct: 945  PEKVWLEGERETLGLYLTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|315111545|ref|YP_156071.2| DNA polymerase III subunit alpha [Idiomarina loihiensis L2TR]
          Length = 1158

 Score = 1101 bits (2849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1046 (40%), Positives = 617/1046 (58%), Gaps = 39/1046 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P+FVHL+VHS +S+++G   +  I + +A    PA+AITD  N    + +  KA   G+
Sbjct: 3    APNFVHLRVHSDFSMIDGLAKVGPICEAVAEAGMPALAITDQMNFCGLVRYYGKAHQLGL 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +P+IGC   +          Q   P   +  +  L    EGYQ++ +L+S+ YL    K 
Sbjct: 63   KPLIGCDFWV----------QADYPESEIFRLTALAMDNEGYQQITQLISKAYLRGNIKG 112

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL+E   EG+I+L+G   G + +A         +  L  +++ F DR Y+ L 
Sbjct: 113  KPVIDKDWLKE-HNEGIILLSGSRQGDVGQALIKGHDSQLDAALDFYQQYFPDRYYLELV 171

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R  +     + V LA    LP+VATN  +FL EED++AH++ +A+     +  K RP
Sbjct: 172  RTGRPQEENYLHKAVALAGETGLPVVATNEVVFLKEEDFDAHEIRVAIHDGYQLEDKRRP 231

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  +P  YL++  EM  +FSD+PEA+ENTVEIA+RC+  +++    LP+F   +      
Sbjct: 232  KKYSPQQYLRSSEEMSELFSDIPEAIENTVEIAKRCNVTVRLGEYFLPKFPTGDL----- 286

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E  L   +  GLE RL      A  +     +Y +RL  EL VI  M F GYFLIV +
Sbjct: 287  TTEEFLIKVSEEGLEERLEFLFPDAEEREQKRPEYDERLKRELGVINDMGFPGYFLIVME 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRRDEVI +V + YG E V+QIITFG++ AKAA+RDVGR L  PY  VDR+ KLIP D
Sbjct: 407  CMDRRDEVIDHVADLYGREAVSQIITFGTMAAKAAIRDVGRVLAHPYGFVDRISKLIPGD 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A   + +   A   D  V  ++++++ LEG+ R+A  HA G+VI    ++  
Sbjct: 467  PGMTL-AKAFEIEPQLGAAYDQDEEVKAIIDMARILEGVTRNAGKHAGGVVISPTKITDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KVD 597
             P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++Q ++D + +R        +D
Sbjct: 526  SPLYCDDEGNNPVTQFDKDDVESAGLVKFDFLGLRTLTIIQWAVDMVNRRHAKSGKDPID 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ I   D   + LL    T  +FQLES GM++ ++ + PD  EDIIALV+L+RPGP+ +
Sbjct: 586  ITSIDLTDPACFKLLKKAETTAVFQLESRGMKELIKKLLPDSFEDIIALVALFRPGPLQS 645

Query: 658  IV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +   + +RK+G+E+I        H  + P+L+ T GVI+YQEQVMQIAQ+L+GY+L  A
Sbjct: 646  GMVDNFIDRKHGREEISYPDAEYQHESLQPILEPTYGVILYQEQVMQIAQVLAGYTLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+E F  GA++N I   +A  IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DLLRRAMGKKKPEEMAKQREIFAKGAAQNNIDPELATKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT WMKTH+P EF+AA M+ +MDN +KI     +  +  + ++PP VN     F V
Sbjct: 766  LVSYQTLWMKTHFPAEFMAAVMSADMDNTDKIVTLADECERMGLDLLPPDVNKGEYKFTV 825

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                R+ Y + AIKGVG      I++A  +  PF  L DFC RVD K++N+R+L+ L+ A
Sbjct: 826  DEQQRVVYGIGAIKGVGEAPIESIIKARQEGGPFRDLFDFCCRVDLKRMNKRILQRLIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV--E 946
            GA+D  G  R  L+ +L+   + A+           ++F     T  + +  E  SV   
Sbjct: 886  GAMDNLGPHRASLMATLEKAIRQAEQHLNAEKIGQSDMFGVLT-TEPEAVEQEFVSVRKW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            + +V  E E+  LG Y +GHP++ ++  L+            T +  +I +A +V+  + 
Sbjct: 945  SEAVWLEGERDTLGLYLTGHPINRFRAELKHYINSTLSNVTPTRKDESIAIAGLVIDVRV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
               ++G R   VT  +     +   F
Sbjct: 1005 LTNKRGQRFAIVTLDDKTARMDVRLF 1030


>gi|51891797|ref|YP_074488.1| DNA polymerase III DnaE [Symbiobacterium thermophilum IAM 14863]
 gi|51855486|dbj|BAD39644.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
            14863]
          Length = 1252

 Score = 1101 bits (2848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1036 (37%), Positives = 569/1036 (54%), Gaps = 35/1036 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL +H+ YSLL+GA  +  +  + A     A+A+TD   LF  L F +     G++
Sbjct: 29   PEFVHLHLHTEYSLLDGANRIEPLARRAAELGMRAMAMTDHGVLFGVLPFYKAMRNHGVK 88

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC+L +            K+       + +L     GY+ L++LVS  Y        
Sbjct: 89   PIIGCELYVAPGSR-----HVKSGGEKPYHLTVLAENYTGYKNLVKLVSAGYTEG-FYYK 142

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
             R+ L  L     EGLI+L+G  +G + + F     + A + +  ++++F  D  ++ LQ
Sbjct: 143  PRVDLELLNTY-REGLIVLSGCLAGEVAQKFLAGQPEEARRAIGRYREIFGPDHYFLELQ 201

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                 ++     + +      LP+VATN++ +L  +D    DVL+ +  +  +   +R  
Sbjct: 202  DLGLPEQQ---GLNRFLLEQGLPVVATNDAHYLRPQDARTQDVLICIGTNKTIDDPNRMR 258

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + Y+K+  EM   F  +P ALEN++ IA RC+  L +    LP +      D    
Sbjct: 259  MGTSELYVKSAEEMYWRFGHVPGALENSLAIAERCNVELPLGQIHLPHYALPPGYDA--- 315

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR      +  R        G   +   +RL+ ELNVI  M F+GYFLIV DF+++
Sbjct: 316  -PGYLRKLCYERIGPRYG------GRPPEGAMERLEHELNVIISMGFAGYFLIVWDFVEF 368

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   IPVGPGRGSGA S+ AY L ITD+DPLR+ LLFERFLNP+R+ MPDFDIDFC +R
Sbjct: 369  ARSRGIPVGPGRGSGASSLVAYVLGITDVDPLRYGLLFERFLNPERVDMPDFDIDFCYER 428

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV NKYG E VAQ+ITF ++ A+AA+RDVGRAL M Y +VDR+ KL+P   +  
Sbjct: 429  RGEVIEYVHNKYGAECVAQVITFNTMAARAAVRDVGRALGMSYGEVDRVAKLLPWGQSLD 488

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                A+      R        +  L++ ++ +EG+ R+ S HAAG+VI   PL + VP+Y
Sbjct: 489  A---ALEKTEELRTLYEEREEIRTLIDTARAVEGMPRNPSVHAAGVVITADPLVEHVPLY 545

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            + +  D  VTQF+M  +++ GL+K DFLGL+TLT++  ++ F+ Q     D+  IP DD 
Sbjct: 546  K-MGDDSIVTQFDMDQLKEIGLLKMDFLGLRTLTVIDHAVKFVRQYQPDFDIERIPMDDP 604

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ETY ++    TLG+FQ+E+  +   L  M+P   EDIIA +SL RPGP+++I  Y   K 
Sbjct: 605  ETYAMIARGETLGLFQIEAGWVADVLRQMKPTRFEDIIATISLCRPGPMEHIPDYIAGKQ 664

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                +  +HP ++P+L ET GV++YQEQ++QIA LL+G SL +AD+LRRA+ KK +E+M+
Sbjct: 665  NPAGVKYLHPDLEPILSETYGVMVYQEQIIQIAHLLAGLSLGQADLLRRAIAKKKREDME 724

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K    F+    + G S  +A  +++ + +FA+YGFNK HA  YA ++YQTA++K H+PV 
Sbjct: 725  KYGRLFMEALEQRGYSHEVATALYDQMIRFANYGFNKCHATPYAKVAYQTAYLKRHHPVA 784

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+AA M   M    K+  + ++ R+  IQ++PP VNT    F      I + L A+K +G
Sbjct: 785  FMAALMNSVMGQEAKLALYIEECRRLGIQVLPPDVNTSFARFVPDGRTIRFGLGAVKNIG 844

Query: 847  TTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY------SRM 899
                  I+ A  +  PF SL D C RVD + LNRR LESL+ AGA D           R 
Sbjct: 845  WNAVDAIVAAREEGGPFTSLRDLCERVDLRPLNRRALESLIMAGAFDRVAPPGGRPARRS 904

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            Q+L++LD I   AQ ++++R     ++F         + +  L              E+ 
Sbjct: 905  QMLEALDKILDDAQKLQRHRQAGQISLFDLGVAGPGTAGEEPLPDIPEFPPQRLLAMEKE 964

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            VLGFY SGHPL  Y+  L   G            G  + +  MV   +Q  TR G+ + +
Sbjct: 965  VLGFYVSGHPLRQYQAALAAHGCLPVAALPEQRDGARVAVGGMVAGLKQVTTRSGANMAF 1024

Query: 1018 VTFSEPAKEYEANFFP 1033
            +T  +   + E   FP
Sbjct: 1025 LTLEDQTGQVEVVVFP 1040


>gi|238751435|ref|ZP_04612927.1| DNA polymerase III subunit alpha [Yersinia rohdei ATCC 43380]
 gi|238710302|gb|EEQ02528.1| DNA polymerase III subunit alpha [Yersinia rohdei ATCC 43380]
          Length = 1171

 Score = 1101 bits (2848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1045 (39%), Positives = 609/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  AG++
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGVK 74

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 75   PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   +GLI+L+GG  G + +     +  + ++ L  +++ F D  Y+ L R
Sbjct: 125  PIIDRDWLIK-HKDGLILLSGGRMGDVGKFILRGNQVLVDQCLEFYQQHFPDSYYLELIR 183

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  F++E D++AH++ +A+     +    RP 
Sbjct: 184  TGRPDEENYLHAAVALATERGLPVVATNDVRFIAESDFDAHEIRVAIHDGFTLVDPKRPK 243

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E       
Sbjct: 244  NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEM-----S 298

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +      Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 299  TEDFLVEKSKQGLEERLELLFPDPEIRAQKRPAYDERLEIELKVINQMGFPGYFLIVMEF 358

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 359  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFC 418

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 419  MEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 478

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 479  GMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 537

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 538  PLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDI 597

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 598  ASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 657

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD
Sbjct: 658  MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 717

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   G++  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 718  MLRRAMGKKNPAEMAKQRSVFEDGAKNQGVNGELAIKIFDLVEKFAGYGFNKSHSAAYAL 777

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 778  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 837

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE L+ +G
Sbjct: 838  DDGEIVYGIGAIKGVGEGPIEAMLEARKEGGHFKELFDLCARVDTKKLNRRILEKLIMSG 897

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL    K A    K       ++F          + +         
Sbjct: 898  AFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPRWQE 957

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             +  + E+  LG Y +GHP+  Y   + +  G    ++   T RG     A +V++ +  
Sbjct: 958  QIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIASRVM 1017

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1018 VTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|255281425|ref|ZP_05345980.1| DNA polymerase III, alpha subunit [Bryantella formatexigens DSM
            14469]
 gi|255267913|gb|EET61118.1| DNA polymerase III, alpha subunit [Bryantella formatexigens DSM
            14469]
          Length = 1150

 Score = 1101 bits (2848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1047 (35%), Positives = 578/1047 (55%), Gaps = 39/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F + A A GI+P
Sbjct: 2    NFTHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGAMYGVIDFYRAARAEGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +         N G         +VLL     GY  LI++VS  ++        
Sbjct: 62   ILGCEVYVAPNSRFDRENTGGE--DRYYHLVLLAENNTGYANLIKIVSAGFVEG-YYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L++   EG+I L+   +G I R       +  +K  L ++++F     ++ LQ 
Sbjct: 119  RVDKELLRQYH-EGIIALSACLAGEIPRYLVRGLYEEGKKVALEYQEIFGKGNFFLELQD 177

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     Q+++++    + LVATN+  +    D E HD+L+ +     +  +DR R
Sbjct: 178  HGIANQQIVNQQLLRMSAETGIELVATNDVHYTLASDAEPHDILLCIQTGKKLQDEDRMR 237

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM  +F    +ALENT +IA RC+  ++     LPRF   E       
Sbjct: 238  YEGGQYYVKSPEEMAQLFPYALQALENTQKIADRCNVEIEFGVTKLPRFDVPEG----YT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GL +R           A++ ++RL++EL +I +M +  YFLIV DFI++
Sbjct: 294  SWEYLNKLCFDGLALRYPP------EQAEELKERLNYELGIIQKMGYVDYFLIVWDFIRY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ ++I VGPGRGS AGS+ +Y L IT +DP++++LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 348  ARDHDISVGPGRGSAAGSLVSYTLGITKLDPIKYNLLFERFLNPERVSMPDIDIDFCFER 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG+L A+  +RDVGR + +PYS VD + K++P +    
Sbjct: 408  RQEVIDYVVRKYGKDRVVQIVTFGTLAARGVIRDVGRVMDIPYSVVDSVAKMVPQELNIT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ ++S  R+    DP + RL++++++LEGL RH S HAAG+VI  +   + VP+ 
Sbjct: 468  LD-KALQENSELRKIYEEDPQMHRLIDMAKRLEGLPRHTSMHAAGVVICQKAADEYVPLS 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            R        TQF M  +E+ GL+K DFLGL+TLT++Q ++  + +   V +D+  I +DD
Sbjct: 527  RGS-DGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQDAVKLVQKDTGVLLDMDKIDYDD 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                + L T  T G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   K
Sbjct: 586  KAVLNSLGTGKTDGVFQLESAGMQNFMKELKPQSLEDLIAGISLYRPGPMDFIPQYIRGK 645

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I    P + P+L+ T G I+YQEQVMQI + L GY+L  +D+LRRAM KK    M
Sbjct: 646  NHPETITYDCPQLKPILEPTYGCIVYQEQVMQIVRDLGGYTLGRSDLLRRAMSKKKASVM 705

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K++  F+         G  KNGIS+ +A  I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 706  EKERRNFVYGNEEEGVPGCIKNGISEQVANKIYDDMIDFAKYAFNKSHAAAYAVVSYQTA 765

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K +YP+EF+A+ MT  +DN  K+  +    R+  I+I+PP VN     F V + +I Y
Sbjct: 766  WLKYYYPLEFMASLMTSVIDNPPKVAAYHMTCRKMGIEILPPDVNCGEGGFSVENGKIRY 825

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+AIK +G      ++E    +  + SL++   R+  K +N+R LES + +GALD  G 
Sbjct: 826  GLSAIKSIGRPVIAALVEEREKNGRYTSLKNLVERMSGKDINKRTLESFIKSGALDSLGA 885

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q++     +        K       ++F    E+     +I++              
Sbjct: 886  TRRQMMTVYSQVCDAVNQERKTSLAGQMSLFDFVGEEEKKHYEISMPDVGEYEKEQLLAY 945

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--------RGNNIRLAAMVVSKQQ 1006
            E+ VLGFY SGHPL+ Y+ + RK       +               + + +  M+ +K  
Sbjct: 946  EKEVLGFYVSGHPLEAYEELWRKRITNVTTDFQPDEETGIPLVQDQSRVTVGGMITAKTI 1005

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + ++T  +     E   FP
Sbjct: 1006 KYTKTNKTMAFLTLEDLLGTVEVVVFP 1032


>gi|109897589|ref|YP_660844.1| DNA polymerase III, alpha subunit [Pseudoalteromonas atlantica T6c]
 gi|109699870|gb|ABG39790.1| DNA polymerase III, alpha subunit [Pseudoalteromonas atlantica T6c]
          Length = 1155

 Score = 1101 bits (2848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1039 (40%), Positives = 613/1039 (58%), Gaps = 33/1039 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS YS+L+G   +  ++  + +   PA+A+TD  N+   ++F ++A + GI+PI
Sbjct: 6    FVHLRVHSDYSMLDGLNKVKPLIAHVKSLNMPAVALTDQMNMCGLVKFYEQAHSNGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    +          Q       V  + LL +  +GY+ +  L+S+ YL    +    
Sbjct: 66   IGTDFWV----------QSDALEDHVFRLTLLAANNKGYKNITLLISKAYLRGSVQDKAV 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL E  +EG+I+L+GG  G +       +  +AEK    +++ F DR Y+ L R  
Sbjct: 116  IDQEWLVE-HSEGVIILSGGRMGDLGVYLTKGNVGLAEKATAFYQQHFPDRFYLELTRTG 174

Query: 191  GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
               +     + V+ A  H+LP+VATN   F+S +++EAH++ +A+     ++   RP+  
Sbjct: 175  RLGEEDYIHRAVEWAGQHDLPVVATNEVCFISPDNFEAHEIRVAIHDGYTLNDPRRPKLY 234

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   Y++   EM  +F+D+P+A+ENTVEIA+RC+  + +    LP F   +         
Sbjct: 235  SEQQYMRTSEEMCELFADIPQAIENTVEIAKRCNVSVLLGTYFLPDFPTGDM-----SIA 289

Query: 309  NELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            + L   +  GLE RLA        +     +Y +RL  EL VI +M F GYFLIV +FIQ
Sbjct: 290  DFLVKVSEEGLEKRLAFLFPDEEERLAKRPEYDERLKIELVVINQMGFPGYFLIVMEFIQ 349

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            W+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D
Sbjct: 350  WSKDNGIPVGPGRGSGAGSLVAYALGITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMD 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP  P  
Sbjct: 410  RRDEVIDHVAEMYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPTPGM 469

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++ +A  ++ R  E    D  V  L+++++ LEG+ R+A  HA G+VI    ++   P+
Sbjct: 470  TLT-KAFEEEPRLPELYAYDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPDKITDFAPL 528

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604
            Y D     PVTQF+   +E AGL+KFDFLGL+TLT++Q ++D + A +GV +D+  IP D
Sbjct: 529  YCDDEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMISAGKGVDIDILAIPMD 588

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
            D +++ LL    T  +FQLES GM+  ++ ++PD  EDIIALV+L+RPGP+ + +   + 
Sbjct: 589  DKKSFKLLQRSETTAVFQLESRGMKDLIKRLRPDSFEDIIALVALFRPGPLQSGMVDNFI 648

Query: 663  NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ +SGYSL  AD+LRRAM
Sbjct: 649  DRKHGREAISYPDATYQHECLKEILEPTYGIILYQEQVMQIAQEMSGYSLGGADLLRRAM 708

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM KQ+E F +GA  N I   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT 
Sbjct: 709  GKKKPEEMAKQRESFETGAKNNNIDPELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 768

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIY 836
            W+KTHYP EF+AA M+ +MDN +KI     + ++  I ++PP VN     F V  + RI 
Sbjct: 769  WLKTHYPAEFMAAVMSADMDNTDKIVTLVDECQRMGITLLPPDVNAGSYKFTVDSEGRIV 828

Query: 837  YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y + AIKGVG      I+EA  + + F  L DFC++VD+K++N+RVLE LV+AGALD  G
Sbjct: 829  YGIGAIKGVGEGPIAAIIEARENHEKFTDLFDFCAKVDTKRINKRVLEKLVYAGALDNLG 888

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFEN 954
              R  ++ +L      A    K   +   ++F          +    K       V  + 
Sbjct: 889  PHRASIMATLPEAISAADQHAKAEAHGQSDMFGLLTTEPEQVEQAFAKVPHWAEKVWLDG 948

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LG Y +GHP++ Y   ++        +   T +        +V+  +    ++G R
Sbjct: 949  EKVTLGLYLTGHPINQYAQEIKHYCTGRLIDLKPTHKDVVSYAVGLVIGVRVMTNKRGRR 1008

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
             G VT  + +   +  FFP
Sbjct: 1009 WGIVTLDDKSARIDVRFFP 1027


>gi|238918790|ref|YP_002932304.1| DNA polymerase III subunit alpha [Edwardsiella ictaluri 93-146]
 gi|238868358|gb|ACR68069.1| DNA polymerase III subunit alpha [Edwardsiella ictaluri 93-146]
          Length = 1162

 Score = 1101 bits (2847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1047 (39%), Positives = 610/1047 (58%), Gaps = 40/1047 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL VHS YS+++G      ++ K+AA   PA AITD  NL   ++F   A  AGI+
Sbjct: 4    PRFIHLHVHSDYSMIDGLAKTAPLVKKVAALGMPAFAITDHTNLCGLVKFYGSAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P++G            +  + +T    + ++ LL    +GYQ L +L+S  Y    G + 
Sbjct: 64   PLVGA----------DVLVRSETMGDELSALTLLACDNQGYQNLTQLISHAYQRGYGAEG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL      GLI+L+G   G + +     +  +A + +  +++ F D  ++ L R
Sbjct: 114  PTIDRDWLIAY-RAGLILLSGARQGDVGKLLLRGNQTLAGECVDFYQRHFPDSYFLELVR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V+LA   +LPLVATN+  FL   D++AH++ +A+     +    RP 
Sbjct: 173  TGRPDEESYLHLAVELAQQRDLPLVATNDVRFLETSDFDAHEIRVAIHDGYTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   Y+++  EM  +F+DLPEAL+N+VEIA+RC+  +++    LP+F   E       
Sbjct: 233  NYSAQQYMRSEEEMCELFADLPEALQNSVEIAKRCNVTIRLGEYFLPQFPTGEM-----T 287

Query: 307  EENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E  L  KA  GLE RL         +      Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEAFLVKKAHEGLEERLTFLFPDEADRARLRPPYDERLEIELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLAFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDRVIDHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R         D+
Sbjct: 527  PLYCDAEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRACQGLEPVDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDQKSFDILQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E++        H  + P+L+ T GVI+YQEQVMQIAQ+L+GYSL  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDREWQHESLKPVLEPTYGVILYQEQVMQIAQVLAGYSLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA  NG++  +A++IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  LLRRAMGKKKPEEMAKQRSVFEEGARNNGVNGELAMHIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGQYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            D     Y + AIKGVG      I+EA        F  L D C+R D+KKLNRR++E L+ 
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARTDTKKLNRRMMEKLIM 886

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A+   +       ++F    +     + +       
Sbjct: 887  SGAFDRLGPHRAALMSSLSDALKAAEQHARAEAIGQVDMFGVLAEEPEQVEQSYGSVPPW 946

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             + +  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V+  +
Sbjct: 947  PAQMVLDGERETLGLYLTGHPITQYLKEIERYAGGGRLKDMHPTDRGKMTTAVGLVLGAR 1006

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1007 VMTTKRGNRIGMCTLDDRSGRLEVMLF 1033


>gi|85059906|ref|YP_455608.1| DNA polymerase III subunit alpha [Sodalis glossinidius str.
            'morsitans']
 gi|84780426|dbj|BAE75203.1| DNA polymerase III alpha subunit [Sodalis glossinidius str.
            'morsitans']
          Length = 1160

 Score = 1100 bits (2846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1045 (40%), Positives = 610/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G + +  ++ K AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 4    PHFIHLRVHSDYSMIDGLVKIGPLVKKAAALHMPALAITDFTNLCGLVKFYGSAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q       +  + +L +   GYQ L  L+S  Y    G   
Sbjct: 64   PIIGADFFV----------QSGMLGDELAELTILAANNVGYQHLTLLISDAYKRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+G   G + +     +    E+ L  +++ F DR Y+ L R
Sbjct: 114  PVIDRDWLIE-HNEGLILLSGARKGDVGKFLMRGNMPQVEQCLAFYERYFPDRYYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V+LA    LP+VATN+  F S +D++AH++ +A+ +   +    RP 
Sbjct: 173  TGRADEESYLHAAVELAARRGLPVVATNDVRFTSPDDFDAHEIRVAIHNGFTLDDAKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  EM  +F+DLPEAL N+VEIARRC+  +++    LP+F   E       
Sbjct: 233  NYSPQQYMRSEEEMCELFADLPEALANSVEIARRCNVTIRLGEYFLPQFPTGEM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L   A  GLE RLA     A  +      Y +RL  EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLVKCAREGLEERLAFLFPDADMRREKRPAYDERLAIELQVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALNITDLDPLAFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDLVIDHVAETYGDDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + + +    AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFVAEPQLQAIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  +      D+
Sbjct: 527  PLYCDGEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRARQGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIEWQHASLQPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F +GA   G+   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFKAGAESIGVDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECLRMGLKVLPPDINSGQYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                  Y + AIKGVG      I+EA   D  F  L D C+R D KKLNRRVLE L+ +G
Sbjct: 827  PEGEIVYGIGAIKGVGEGPIEAIIEARNQDGHFRELFDLCARTDIKKLNRRVLEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F    +   + + +    +    
Sbjct: 887  AFDRLGPHRAALMNSLCDALKAADQHAKAEAIGQGDMFGVLAEEPAAVEASYSTVAPWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP+  Y + I R  G    ++   T RG  +    +V+S +  
Sbjct: 947  QVVLDGERETLGLYLTGHPITQYLREIERYAGGVRLKDIHPTDRGKMVTAVGLVLSARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   +   F
Sbjct: 1007 VTKRGNRIGVCTLDDRSGRLDVMLF 1031


>gi|237808841|ref|YP_002893281.1| DNA polymerase III, alpha subunit [Tolumonas auensis DSM 9187]
 gi|237501102|gb|ACQ93695.1| DNA polymerase III, alpha subunit [Tolumonas auensis DSM 9187]
          Length = 1160

 Score = 1100 bits (2846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1045 (40%), Positives = 616/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL +HS +S+L+G   +  ++ + A +   A+AITD  N    + F   A + GI+
Sbjct: 4    PRFVHLHIHSDFSMLDGLQKIKPLVARAAENNMVAMAITDQMNQSGLVRFYGDAHSKGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  ++ L    EG Q LI+L+S+ +L    +  
Sbjct: 64   PIIGVDFWV----------QSEELGDELFHLIGLAMNNEGQQNLIQLISKGFLRGHIQGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E    G+I+L+GG  G I +     +  + E+    +++ F +R Y+ L R
Sbjct: 114  AVIDKAWLAE-HATGVILLSGGRDGDIGKFLLKGNQAMVERCTAFYQQHFPERFYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V+LA   +LP+VATN+ +FL+++D++AH++ +A+     +    RP 
Sbjct: 173  TGRLDEETYLHMAVELAIQQDLPVVATNDVVFLNKDDFDAHEIRVAIHDGYTLDDARRPK 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R +   Y++ + EM  +F D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  RYSNQQYMRTQDEMCELFKDIPEALANSVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA        +      Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVMKSKEGLEERLAFLFPDPAERAEKRIAYDERLDIELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL   LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLALDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MDRRDEVIDHVAQMYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  E    D  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAFDVEPKLVELYEQDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDL 598
            P+Y D +   PVTQF+   +E AGL+KFDFLGL+TLT+++ +LD +  R        VD+
Sbjct: 527  PLYCDDQGLQPVTQFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINPRLKTEGKPPVDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD  ++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDPTSFKILKNSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIQWQHDSLQPILEPTYGIILYQEQVMQIAQTLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F SGA  NG+   +A++IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSGFESGAVSNGVDGELAMHIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQT W+KTH+P EF+AA MT +MDN +KI     + ++  ++++PP VNT    F V 
Sbjct: 767  VSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVTLVDECQRMGLKLIPPDVNTGQYRFTVN 826

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                + Y + A+KGVG      I+ A     PF  L DFC+RVD K+LN+RV+E L++AG
Sbjct: 827  ERGEVVYGIGAVKGVGEGPVEAIIAARNEGGPFRDLFDFCNRVDIKRLNKRVMEKLIYAG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVEN 947
            ALD  G  R  L+ SL+   K A+   K+      ++F             T       +
Sbjct: 887  ALDRLGPHRAALMASLEEAMKAAEQKAKDAALGQNDLFGDLFADDGVLPTPTFADVPEWS 946

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                 + E+  LG Y +GHP++ Y   L+        +   T R      A +V++ +  
Sbjct: 947  DQKWLDGERETLGLYLTGHPINQYLAELKHYTSGRLCDLQPTERDKPAVAAGLVLNARIM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+++G +T  + +   +   F
Sbjct: 1007 VTKRGTKMGILTLDDRSGRLDITLF 1031


>gi|317132302|ref|YP_004091616.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense YUAN-3]
 gi|315470281|gb|ADU26885.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense YUAN-3]
          Length = 1174

 Score = 1100 bits (2846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1047 (37%), Positives = 590/1047 (56%), Gaps = 41/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +HS YSLL+GA  + +I  +     Q A AITD   ++  ++F + A  AG++P
Sbjct: 3    GFVHLHLHSEYSLLDGACRIGDIPARAKELGQAAAAITDHGVMYGVMDFYKAARKAGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++    +      ++   P  +   +VLL    +GY+ LI LVS+ ++ D      
Sbjct: 63   IIGCEVYTAARTRH---DKQYHPDASHGHLVLLCENMQGYRNLIRLVSQAFI-DGFYGKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L +   EGLI L+   SG + +     +   A  ++  +  LF  D  Y+ LQ 
Sbjct: 119  RVDWDLLTQYH-EGLIALSACLSGEVPKLLLAGNEAGARAKVEAYAALFGEDHFYLELQD 177

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ R  + ++++A    LPLVATN++ +L +ED     +L+ +  +  V +     
Sbjct: 178  HGMPEQQRVNAGLLEIARVSGLPLVATNDAHYLRKEDAYLQKMLLCIQTNRTVDEPGVGF 237

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + Y+K+  EM ++F  +PEA +NTV IA+RC+        ILP F         +E 
Sbjct: 238  PTDEFYMKSEEEMRALFPQVPEACDNTVAIAKRCNVEFTFGKTILPHFEVP----GGQEH 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR  A  GL  R               ++RLD+EL+VI RM +  Y+LIV DFI+ A
Sbjct: 294  GAYLRGMAERGLADRYGP------QPDDTVKERLDYELDVITRMGYVDYYLIVHDFIRHA 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+  IPVGPGRGSGAGS+ AY + IT IDP+R+ LLFERFLNP+R+SMPDFDIDFC +RR
Sbjct: 348  KEAGIPVGPGRGSGAGSLVAYCVGITGIDPMRYHLLFERFLNPERISMPDFDIDFCYERR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + VAQIITFG++ A+AA+RDVGRA+ +PY++VDR  K++P +    +
Sbjct: 408  QEVIDYVVRKYGSDHVAQIITFGTMAARAAIRDVGRAMGVPYAEVDRTAKMVPAELGMTI 467

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+      R    AD +V RLL+ ++ LEG+ RHASTHAAG+VI   P+   VP+ +
Sbjct: 468  -AKALEHSEDLRTRYDADETVRRLLDTAKGLEGMPRHASTHAAGVVITRDPVDSYVPLQK 526

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                +  VTQF M  +E+ GL+K DFLGL+TLT+++ + + +  Q      +  I  +DH
Sbjct: 527  --NDESIVTQFTMTTLEELGLLKMDFLGLRTLTVIRYAENRIREQYVPDFSIEQIALNDH 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y +L +  T G+FQ ES GMR  +  + P+ +ED+IA++SL+RPGP+++I  Y   ++
Sbjct: 585  AVYDMLGSGNTEGVFQFESPGMRHTIMELGPEHMEDLIAVISLFRPGPMESIPRYIENRH 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              EK+   HPL+  +L  T G I+YQEQVM+I + L GYS   AD++RRAM KK    M 
Sbjct: 645  HPEKVAYRHPLLKDILDVTYGCIVYQEQVMEIVRKLGGYSYGRADLVRRAMAKKKAAVMQ 704

Query: 727  KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI             GA +NG+ ++ A  IF+ ++ FA Y FNKSHAAAYA++SY
Sbjct: 705  QERDHFIHGLRREDGTFECVGAVRNGVDESTANAIFDEMSSFASYAFNKSHAAAYALVSY 764

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K HYP E+ AA +T  ++N  K+ ++  +  + +I I+PP VN     F V  N 
Sbjct: 765  QTAYLKCHYPKEYFAALLTSVLENSAKVSEYINECVRLHIGILPPDVNESMNGFTVSGNN 824

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L A+K +G    R ++   A + PF S  DF  R     LNRR+LESL+  GA D 
Sbjct: 825  IRFGLDAVKNLGRGFIRSLVRERAENGPFASFRDFVRRALPYDLNRRMLESLIKCGAFDS 884

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
              Y R QL+   + +    +   KN  +   ++F         +  L+         R  
Sbjct: 885  LHYKRRQLMLGYEALLAQEETTRKNNLSGQVSLFGTPAAPTDKQENLKDAEEFAPRERLA 944

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGY-------EESVATIRGNNIRLAAMVVSKQQ 1006
             E+ VLGFY +GHP++ Y+  +R++ +          E       G ++ LA +V SKQ 
Sbjct: 945  YEKEVLGFYLTGHPVERYRAAIRRLKLPSVGTILEHEEHISNDADGTSVSLAGIVQSKQT 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + + T  + +   E   FP
Sbjct: 1005 KITKNNETMAFCTLDDGSGTIELIVFP 1031


>gi|150391763|ref|YP_001321812.1| DNA polymerase III DnaE [Alkaliphilus metalliredigens QYMF]
 gi|149951625|gb|ABR50153.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens QYMF]
          Length = 1155

 Score = 1100 bits (2845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1053 (38%), Positives = 604/1053 (57%), Gaps = 48/1053 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+G  ++N  LD++      A+AITD  ++F  ++F + A   GI+P
Sbjct: 2    SFVHLHVHTQYSLLDGFATINQTLDRVKELGMDALAITDHGSMFGVVDFYKAAKKKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++    +    MT++      +   +VLL     GYQ LI+LVS  YL        
Sbjct: 62   IIGCEVYTAARG---MTDKDPVKDKSQGHLVLLAKNNVGYQNLIKLVSESYLHG-FYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+  + + +  TEGLI L+   +G + R    N  + A+++ L  +++F     Y+ LQ 
Sbjct: 118  RVDYNEIAK-HTEGLIALSACLAGEVQRLILQNQYEKAKEKALMLEEMFGKGNFYLELQD 176

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H+  ++     +++++     +PLVATN+  +  +ED EAHD+L+ +    +++ + R +
Sbjct: 177  HKLPEQQQVNEELIKMNQETGIPLVATNDVHYTDQEDAEAHDILLCIQTGKILNDEKRLK 236

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  YLK + EM  +F   PEAL NTV+IA  C          LP +         K 
Sbjct: 237  FPNDQFYLKTQKEMAKLFDYAPEALANTVKIAEMCQVDFDFDTIHLPNYDVAPG----KT 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            ++  LR     GL+ R  +         Q+ ++RL++EL +I +M +  YFLIV DFI++
Sbjct: 293  KQGYLRELCYEGLQYRYKE-------ITQELKERLEYELGIIEQMGYMEYFLIVWDFIKY 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   I VGPGRGS AGS+ AY L ITDIDP+R++L+FERFLNP+R+SMPD DIDFC +R
Sbjct: 346  AKDQGIAVGPGRGSAAGSIVAYTLGITDIDPIRYNLIFERFLNPERVSMPDIDIDFCYER 405

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI YV+ KYG ++VAQIITFG++ A+ A+RDVGR + MPY++VD++ K IP      
Sbjct: 406  REEVINYVKAKYGQDKVAQIITFGTMAARGAIRDVGRVVNMPYNEVDQIAKEIPFTLGIT 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   R+    +   + L+ +++KLEG+ RHASTHAAG+VI  +PL Q +P+Y
Sbjct: 466  IE-KALEVNPVLRKMYQENDDANYLIRMAKKLEGMPRHASTHAAGVVIAKKPLDQHIPLY 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 +   TQF M  +E+ GL+K DFLGL+TLT+++ +L+ +    G++V      + D
Sbjct: 525  M--HDNSMTTQFTMGTLEELGLLKMDFLGLRTLTVIRDALELIKANHGLEVSFEDSEYTD 582

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             + Y L+    TLG+FQLES GM Q +  ++PD  EDI+A +SL+RPGP+++I  Y   K
Sbjct: 583  PKVYELIGRGETLGVFQLESQGMIQFMRELKPDNFEDIVAGISLFRPGPMESIPKYIEYK 642

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  EKI  +H  ++P+L  T G ++YQEQVMQ+ + L+GYS   +D++RRAMGKK ++ M
Sbjct: 643  NNHEKIEYLHESLEPILNMTYGCMVYQEQVMQVVRDLAGYSYGRSDLVRRAMGKKKRDVM 702

Query: 726  DKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            +++++ FI             G  + GI + IA  I++ +  FA+Y FNKSHAA+YAV+S
Sbjct: 703  EEERKYFIYGKESEAGELEIEGCIRRGIPENIANEIYDQMIDFANYAFNKSHAASYAVLS 762

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K HYPVEF+AA MT  M N  K+  + QD ++  ++I+ PS+N     F V DN
Sbjct: 763  YQTAYLKCHYPVEFMAALMTSVMGNTLKVVHYIQDVKRQGMEILSPSINKSYSKFAVEDN 822

Query: 834  RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +I + LAA+K VG      I+E       F S  DFC +V SK LN+R +ESL+  GA D
Sbjct: 823  QIRFGLAAVKNVGGNMIDAIVETRNHKGSFTSFTDFCQKVPSKDLNKRSIESLIKCGAFD 882

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENSSV 950
            C    R QLL   + +        K        +F    G  S  ++  L      N  +
Sbjct: 883  CLEVYRAQLLAIYEKVLDSVYHDRKRNIQGQLGLFEGPSGMPSNLNEGLLPNIKEFNDKL 942

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMG-------IKGYEES---VATIRGNNIRLAAM 1000
            R   E+ VLG Y SGHPL  Y+  L K         +   EE         G+ + +  +
Sbjct: 943  RLNMEKEVLGLYISGHPLAAYEKELSKKVSAYSNQLVLSLEEDDNEQEWKEGDRVIIGGI 1002

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V+ K  K T+    + +VT  +     E   FP
Sbjct: 1003 VIEKTIKTTKHQQIMAFVTVEDLFGVVECVVFP 1035


>gi|153853950|ref|ZP_01995283.1| hypothetical protein DORLON_01274 [Dorea longicatena DSM 13814]
 gi|149753332|gb|EDM63263.1| hypothetical protein DORLON_01274 [Dorea longicatena DSM 13814]
          Length = 1158

 Score = 1100 bits (2845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1047 (35%), Positives = 565/1047 (53%), Gaps = 39/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      ++AITD   ++  ++F + A AAGI+P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKECVARVKELGMNSVAITDHGVMYGVIDFYRAARAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G +       +VLL     GY  L+++VSR +         
Sbjct: 62   ILGCEVYVAPGSRFDKEAVG-SGDDRYYHLVLLAENDLGYHNLMKIVSRGFTEG-YYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+ L  LQE   EG+I L+   +G + +       +  +   L ++ +F     ++ LQ 
Sbjct: 120  RVDLEVLQEFH-EGIIALSACLAGEVQKNILRGMYEEGKAAALRYQDIFGKGNFFLELQD 178

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++   +Q +++++    + LVATN+  +   ED + HD+L+ +     ++ +DR R
Sbjct: 179  HGMQEQQIVNQSLLRMSQETGIELVATNDVHYTYAEDVKPHDILLCIQTGKKLADEDRMR 238

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM  +F    +ALENT +IA RC+  ++     LP++   E       
Sbjct: 239  YEGGQYYIKSEEEMKQLFPYALQALENTQKIADRCNVEIEFGVTKLPKYDVPEG----YT 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GL+ R   G           ++RL++EL+VI  M +  YFLIV DFI +
Sbjct: 295  SWEYLNKLCFDGLKERYPDG-------DDSLKERLEYELSVIKSMGYVDYFLIVWDFINY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I VGPGRGS AGS+ +Y L IT IDP+++ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 348  ARTQGIKVGPGRGSAAGSIVSYCLGITSIDPIKYQLLFERFLNPERVSMPDIDVDFCFER 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG++ A+  +RDVGR + +PY+ VD + K++P +    
Sbjct: 408  RQEVIDYVGRKYGADRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDSIAKMVPTELNIT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +  F++    D  V  L+++S++LEGL RH S HAAG+VIG R + + VP+ 
Sbjct: 468  LD-KALKMNPEFKKLYQEDEQVKELIDMSRRLEGLPRHTSMHAAGVVIGQRAIEEFVPLS 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                     TQF M  +E+ GL+K DFLGL+TLT++Q +    +      +D++ I +DD
Sbjct: 527  LGS-DGSVTTQFTMTTLEELGLLKMDFLGLRTLTVIQDAERLASISSGKTIDINKIDYDD 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                  + T  T G+FQLES+GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 586  KAVLASIGTGKTDGVFQLESAGMKNFMKELKPQNLEDIIAGISLYRPGPMDFIPQYIKGK 645

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  + I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK  + M
Sbjct: 646  NNPDSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKGDVM 705

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K+++ F+         G   NGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 706  QKERQNFVYGNPDEGVPGCIANGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 765

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K +YPVEF+AA MT  +DN  K+ ++    RQ  I+I+PP +N     F V    I Y
Sbjct: 766  WLKYYYPVEFMAALMTSVIDNPGKVSEYIYSCRQMGIKILPPDINKGEGSFSVDGGNIRY 825

Query: 838  SLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAAIK +G      I++   +   F +L+DF  R+  K++N+R +ES + +GA D  G 
Sbjct: 826  GLAAIKSIGKPVIESIIQERKNGGEFSNLKDFIERLSGKEVNKRTIESFIKSGAFDSLGG 885

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I        K       ++F    +       I L          +   
Sbjct: 886  TRKQFMVVYVQILDQVNRERKYSMTGQLSLFDIVSDDQKSEFDIPLPDVGEYEKETKLAF 945

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+ Y+   +K   +   +              G    +  M+ +K  
Sbjct: 946  EKEVLGVYLSGHPLEDYEEKWKKNISRTTLDFQIDDETGRTKVHDGAKEIVGGMITNKTI 1005

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + ++T  +     E   FP
Sbjct: 1006 KYTKTNKVMAFITLEDLVGSVEVVIFP 1032


>gi|37524688|ref|NP_928032.1| DNA polymerase III subunit alpha [Photorhabdus luminescens subsp.
            laumondii TTO1]
 gi|36784113|emb|CAE12982.1| DNA polymerase III alpha subunit [Photorhabdus luminescens subsp.
            laumondii TTO1]
          Length = 1160

 Score = 1100 bits (2845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1045 (40%), Positives = 612/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G    + ++ K+A    PA AITD  NL   + F   A  AGI+
Sbjct: 4    PRFVHLRVHSDYSMIDGLAKTSPLVKKVAQLGMPAFAITDFTNLCGLVRFYGSAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          + +       S+ +L     GY  L  L+S  Y    G   
Sbjct: 64   PIIGADFYV----------ESELLGDEHASLTILARNNTGYHNLTLLISEAYQKGYGAIG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL     EGLI+L+GG  G + +     +  + ++ L  +++ F    Y+ L R
Sbjct: 114  PTIKQEWLIN-HKEGLILLSGGRMGDVGKFLLRGNQAMVDQCLEFYQEHFPGCYYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  F+  ED++AH++ +A+     ++   RP 
Sbjct: 173  TGRADEESYLHAAVALATEKSLPVVATNDVCFIDGEDFDAHEIRVAIHDGYTLADPKRPK 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL++  EM  +F+D+PEALEN+VEIA+RC+  +++    LP+F   E       
Sbjct: 233  NYSPQQYLRSEQEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPTGEM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L N++  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDYLINRSQQGLEERLAFLYPDPKVRAEKRPEYDERLDIELRVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP
Sbjct: 408  MEKRDLVIDHVADMYGRNAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFS 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D+
Sbjct: 527  PLYCDPEGLNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRTKKGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLNDAKSFDMLQRAETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDIQWQHESLQPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA K GI+  +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRSVFEDGAKKLGINGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLIDECWRMGLKILPPDINSGLYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      I+EA   D  F  L D C+RVD+KKLNRRV+E L+ +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAIIEARQKDGYFRELFDLCARVDTKKLNRRVMEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL++  K A    K       ++F    +     + +    S    
Sbjct: 887  AFDRLGPHRAALMSSLEDALKAADQHAKAEATGQTDMFGVLAEAPEEVERSYANISQWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQK 1007
             +  + E+  LG Y +GHP+  Y   + +       ++   T RG    +  +V++ +  
Sbjct: 947  QIVLDGERETLGLYLTGHPITRYLKEIERYTSGLRLKDVNPTPRGQVTTVIGLVLASKVI 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 ITKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|148981148|ref|ZP_01816310.1| DNA polymerase III subunit alpha [Vibrionales bacterium SWAT-3]
 gi|145960975|gb|EDK26300.1| DNA polymerase III subunit alpha [Vibrionales bacterium SWAT-3]
          Length = 1159

 Score = 1100 bits (2845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1046 (39%), Positives = 606/1046 (57%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A   G
Sbjct: 2    SDPKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHGCG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG    +          Q       +  + +L S  +GY  L  L+S+ YL    +
Sbjct: 62   VKPIIGADFLM----------QSPEFGDELTKLTVLASDNKGYNNLTLLISKAYLRGHIQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E   EGLI+L+G   G I +A    +  +    +  +K  F DR Y+ L
Sbjct: 112  HQPVIDKEWLIE-NAEGLIILSGAKEGEIGKALLKGNRDLVASSVEFYKTHFPDRFYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        ++LA   +LP+VATN  +FL+E+ ++AH++ +A+     +    R
Sbjct: 171  IRTGRADEESYLHFALELAEQQDLPVVATNEVVFLTEDLFDAHEIRVAIHDGYTMVDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +   YL++  EM  +FSD+PEALEN+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKNYSAQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RLA        +     +Y +RL  EL V+  M F GYFLIV 
Sbjct: 286  LAIEDFLIKKSEEGLERRLAFLFPDEKERAERRPEYDERLKVELEVVNNMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID
Sbjct: 346  EFIQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDID 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +    E    D  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFLAEPALPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYADAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKEGKEPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  +++LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIESIPLDDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E +        H  +   L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 645  SGMVDNFIDRKHGREAVSYPDETWQHESLKDTLEPTYGIILYQEQVMQIAQILAGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRGTFKEGAEANGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVIGLVDECFRMKLKLLPPDINSGLYRFN 824

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VDDDGAIVYGIGAIKGVGEGPIEAIIEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GALD  G  R  ++ SL +  K A       +    ++F          +    +    
Sbjct: 885  SGALDRLGPHRAAMMASLADAVKAASQYHHAESFGQSDMFGVLTDAPEEVEHKYTQVPRW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +  V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ + 
Sbjct: 945  SEKVWLEGERETLGLYLTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGTRIGLMTIDDRSGRMEVMLF 1030


>gi|163750366|ref|ZP_02157606.1| DNA polymerase III subunit alpha [Shewanella benthica KT99]
 gi|161329856|gb|EDQ00842.1| DNA polymerase III subunit alpha [Shewanella benthica KT99]
          Length = 1157

 Score = 1100 bits (2845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1045 (40%), Positives = 599/1045 (57%), Gaps = 36/1045 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              PSFVHL+VHS +S+ +G   +  IL K+     PA+A+TD  NL   ++F     +AG
Sbjct: 2    SDPSFVHLRVHSDFSMSDGLAKVKPILAKVTELGMPAVALTDQTNLCGLVKFYGACHSAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG    +          Q         +I +L  T EGY  L  L+S  YL    K
Sbjct: 62   VKPIIGADFWM----------QVPGFDKEFCAITVLAMTNEGYSNLTLLISDAYLRGHIK 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL +  ++GL++L+GG  G + RA    +       +  ++  F DR Y+ L
Sbjct: 112  DKAVIDQGWLAKY-SKGLLLLSGGRQGDVGRALLNGNHGQVASLIEFYRTHFPDRYYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V LA   +LP+VATN  +F   E +EAH++ +A++    ++   R
Sbjct: 171  LRTGRPDEETYLHLAVALAQEKDLPVVATNQVVFNGPEFFEAHEIRVAISDGFTLADPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   Y K   EM  +F D+PEA+ NTVEIA+RC+  +++    LP F   +     
Sbjct: 231  PKKYSEQQYFKTSEEMCELFQDIPEAIANTVEIAKRCNVTVRLGEYFLPNFPTGDL---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L   +  GLE RL         +      Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -SIEDFLVKVSKDGLEDRLEFLFPDPEVRAQKRPRYDERLDIELKVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW K  NIP+GPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFDID
Sbjct: 346  EFIQWGKDQNIPIGPGRGSGAGSLVAYSLNITDLDPLEYDLLFERFLNPERVSMPDFDID 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ K++P 
Sbjct: 406  FCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMVPA 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A   +   +E+   D  V  L+++ + LEG+ R+A  HA G+VI    ++ 
Sbjct: 466  EPGMTL-AKAFEVEPALQESYDGDEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +        V
Sbjct: 525  FAPIYCDSEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKRKELGKEPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD + + LL    T  +FQLES GM+  ++ +QPD  ED+IALV+L+RPGP+ 
Sbjct: 585  RIESIPLDDKKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   +  RK+G+E +        H  +  +L+ T G+I+YQEQVMQIAQ+L+GYSL  
Sbjct: 645  SGMVDNFIERKHGREVVSFPDAEYQHESLRWVLEPTYGIILYQEQVMQIAQVLAGYSLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NGI   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRGTFKEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA M+ +MDN +KI     +  +    ++PP VN   + F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVILVDECERMGQPLLPPDVNKGLLKFT 824

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V  + +I Y + AIKGVG      I+ A  + PF  L DFC+RVD KKLN+R++E L+FA
Sbjct: 825  VDEEGKIVYGIGAIKGVGDGPVESILAARKNGPFKDLFDFCARVDLKKLNKRIMEKLIFA 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            GALD  G  R  ++ +L    + A    K       ++F        D K    + +   
Sbjct: 885  GALDSLGPHRAAMMATLPEAVRAADQNAKAEAIGQHDMFGLLNSDVEDIKQQFVQCTPWP 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              V  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +V++ +  
Sbjct: 945  DKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVIATRVM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GS++G VT  + +   E   F
Sbjct: 1005 LTKRGSKMGLVTLDDKSARLEVMLF 1029


>gi|255657348|ref|ZP_05402757.1| DNA polymerase III DnaE [Clostridium difficile QCD-23m63]
 gi|296451837|ref|ZP_06893556.1| DNA-directed DNA polymerase III alpha subunit [Clostridium difficile
            NAP08]
 gi|296879767|ref|ZP_06903741.1| DNA-directed DNA polymerase III alpha subunit [Clostridium difficile
            NAP07]
 gi|296259316|gb|EFH06192.1| DNA-directed DNA polymerase III alpha subunit [Clostridium difficile
            NAP08]
 gi|296429238|gb|EFH15111.1| DNA-directed DNA polymerase III alpha subunit [Clostridium difficile
            NAP07]
          Length = 1189

 Score = 1099 bits (2843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1062 (35%), Positives = 604/1062 (56%), Gaps = 55/1062 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  F HL VH+ YSLL+G   +  ++ +       +IAITD   +F  ++F + A   GI
Sbjct: 2    NKDFAHLHVHTEYSLLDGFSRVKKLIKRAKELNMSSIAITDHGCMFGVIDFYKTAIKEGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC++    +    + ++          +VLL    EGY+ LI++VS  Y+      
Sbjct: 62   KPIIGCEVYTAARG---LRDKDPNYDKYQGHLVLLAKNMEGYKNLIKIVSTSYVEG-FYY 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
              R+ +  L++   +G+I L+   +G + RA    + + A++    ++ +F  +  ++ +
Sbjct: 118  KPRVDMEELKK-HNKGIIALSACLAGDVARALMNRNYEKAKQFAFDYRDIFGEENFFLEI 176

Query: 187  QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++    S +V+L+    +PLVATN+  ++++ED + HDVLM +     ++  +R
Sbjct: 177  QDHNLPEQKEVNSGLVKLSKETGIPLVATNDVHYVNKEDSKIHDVLMCIQMGKTLNDPNR 236

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R   D  YLK+R EM  +F    EA++NTV+IA  C+     +   LP++   E     
Sbjct: 237  MRFGSDEFYLKSREEMEELFPYALEAIDNTVKIADMCNVEFDFNTIHLPKYDVPEG---- 292

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               E  LR     GL+ R           + +  +RL++EL+VI +M +  YFLIV DFI
Sbjct: 293  YTPETYLRELCFNGLKERY-------DNPSDEILERLNYELDVIEKMGYVEYFLIVWDFI 345

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             ++K+NNI VGPGRGS AGS+ AY L ITDIDP+++SLLFERFLNP+R+SMPD DIDFC 
Sbjct: 346  NFSKENNIIVGPGRGSAAGSIVAYTLKITDIDPIKYSLLFERFLNPERISMPDIDIDFCY 405

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI YV+ KYG + VAQIITFG++ AKAA+RDVGR L + Y++VD++ K IP    
Sbjct: 406  ERREEVIDYVKRKYGDDHVAQIITFGTMGAKAAIRDVGRVLDIGYNKVDKIAKEIPFALG 465

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  +   +E    DP    ++ IS+++EG+ RHASTHAAG+VI   P+ + VP
Sbjct: 466  MTID-KALDTNPNLKELYDQDPETKEIINISKQIEGMLRHASTHAAGVVISKNPVDEYVP 524

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF------LAQRGVKVDL 598
            +Y+    D   TQF M  +E+ GL+K DFLGL+TLT+++ +LD       +     K+D 
Sbjct: 525  LYK--HQDAITTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLDLIEKNRVIKNYTEKIDF 582

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S + +DD + Y +L++  TLG+FQLES+GMR  ++ ++PD  EDI+A +SL+RPGP+D+I
Sbjct: 583  SKMDYDDPKVYEMLSSGNTLGVFQLESAGMRSFMKQLKPDNFEDIVAGISLFRPGPMDSI 642

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y   K+  + +  +H  + P+++ T G ++YQEQVMQ+ + L GYS   +D++RRAM 
Sbjct: 643  PAYIKNKSNPKDVTYLHEKLKPIMEVTYGCLVYQEQVMQVVRDLGGYSYGRSDLVRRAMS 702

Query: 719  KKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            KK  + M+++++ FI             G  +NG+ + IA  IF+ +  FA Y FNKSHA
Sbjct: 703  KKKMDVMEEERQYFIHGKFDEDGNIEIAGCIRNGVEEEIANKIFDDMIDFARYAFNKSHA 762

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAY V++Y+TA++KT+YPVEF+AA +T  M N +K+ ++ ++ +   I ++PP +N    
Sbjct: 763  AAYGVLAYETAYLKTYYPVEFMAALITSVMGNTDKVVEYIRECKALEIDVLPPDINKSFS 822

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
             F V  + I + LAA+K VG     +I+     +  F  L D   R+D K  N+RV+ESL
Sbjct: 823  KFSVEGDNIRFGLAAVKNVGVNIINNIIAERESNGLFVDLVDLVKRLDQKDTNKRVIESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-----ITL 940
            +  GA D    +R  L+   +++ +      K       ++F     +  D       +L
Sbjct: 883  IKCGAFDNISENRASLMAGYESLLESVSMDRKKNVQGQISLFDAFGDSEEDSDFQQIYSL 942

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM---------GIKGYEESVATIR 991
             K        R   E+ VLG Y SGHPL  ++  L++           +K  EES   + 
Sbjct: 943  PKRQEYEERERLNLEKEVLGMYVSGHPLSQFEKELQEKTSMDNGKLNSLKEEEESYLQMN 1002

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              ++ +  M+V+K  K T++   + ++   +     E   FP
Sbjct: 1003 ETDVIMGGMIVTKTIKTTKRNEIMAFLELEDLYGAIEIVVFP 1044


>gi|163795645|ref|ZP_02189611.1| DNA polymerase III, alpha subunit [alpha proteobacterium BAL199]
 gi|159179244|gb|EDP63777.1| DNA polymerase III, alpha subunit [alpha proteobacterium BAL199]
          Length = 1162

 Score = 1099 bits (2843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 511/1045 (48%), Positives = 686/1045 (65%), Gaps = 28/1045 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F+HL+VHS YSL EGA+    ++     ++ PA+++TD+ NLF ALEFS  A   G+QP
Sbjct: 5    DFIHLRVHSVYSLAEGAIHAKQLVKLAKQNRMPAVSMTDSGNLFGALEFSVTAAGEGVQP 64

Query: 70   IIGCQ---LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+G Q         D   +        P    ++LLV +  GY+ L+ +VSR Y+   G+
Sbjct: 65   IVGVQLAVRRPAEPDRRGLRVVAGRDVP-PDQLLLLVQSEVGYRNLMGIVSRAYMETSGE 123

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            +  ++ L  L E  TEGLI LT G  G + R         AE  L   ++LF DRLYV L
Sbjct: 124  EEPQVALDEL-EGHTEGLIALTAGLRGGMGRLLLEGRDSDAESVLQHLQRLFPDRLYVEL 182

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH   D  R E +++ LAY  ++PLVATN   F  E+ +EA DVL+ +A ST +    R
Sbjct: 183  QRHFLEDENRIEGRLIDLAYARKIPLVATNEVFFADEDMHEAQDVLLCIAGSTTIGNPKR 242

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R+TP H  K+  EM  +F+DLPEA++NTV +ARRC+++ +   PILPRF      +  +
Sbjct: 243  RRLTPHHRFKSSQEMRELFADLPEAVDNTVVVARRCAYMPRKLDPILPRFET----EGGR 298

Query: 306  EEENELRNKAVAGLEVRLAQGAI-------AKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
             E  ELR +A AGL  RL    +             + Y  RL  EL VI +M F GYFL
Sbjct: 299  SEAEELRAQAEAGLRARLDAHVLSAETPDDKHAEITRPYWDRLAMELGVIEQMGFPGYFL 358

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV+DFI+WAK  NIPVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDF
Sbjct: 359  IVSDFIKWAKAQNIPVGPGRGSGAGSLVAYSLLITDLDPLRWGLLFERFLNPERVSMPDF 418

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFCQDRRDEVIRYVQ+KYG +RVAQIITFG LQA+AALRDVGR L+MPY QVDR+CKL
Sbjct: 419  DIDFCQDRRDEVIRYVQDKYGRDRVAQIITFGKLQARAALRDVGRVLEMPYGQVDRICKL 478

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +PN+PA+PV+L QA+  +   R  R AD +V  L+ I+ +LEG+YR++STHAAG+VIGDR
Sbjct: 479  VPNNPANPVTLAQAVTTEEELRRQRNADENVANLIRIALQLEGMYRNSSTHAAGVVIGDR 538

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            PLS+LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+LQ+++D L + G+ +D
Sbjct: 539  PLSELVPLYRDPRSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLQRAVDLLKEGGIALD 598

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ IP +D  TY +L    + G+FQLESSGMR  L  ++PD  EDIIALV+LYRPGP+ N
Sbjct: 599  LAKIPLEDEATYTMLARGESTGVFQLESSGMRDVLRRLRPDRFEDIIALVALYRPGPMAN 658

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y   K+G E+   +HP ++P+L ET G++IYQEQV Q AQLLSGY+L  AD+LRRAM
Sbjct: 659  IPKYIACKHGDEQPDYMHPKLEPVLNETFGIMIYQEQVQQAAQLLSGYTLGGADLLRRAM 718

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKKIKEEMD Q+ERF+SGA  NG+ +  A  IF+ +A FA YGFNKSHAAAYA+++YQTA
Sbjct: 719  GKKIKEEMDAQRERFVSGAVDNGVDQGQASGIFDQIAAFAGYGFNKSHAAAYALVAYQTA 778

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GD 832
            ++K ++PVEFLAASMT +M N +K+  F Q+ ++  I ++PP +N    DF V     G 
Sbjct: 779  YLKANHPVEFLAASMTYDMGNTDKLNTFRQELQKLRIPLLPPDINRSRRDFAVERMPDGT 838

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I Y+LAA+K VG      ++ A  AD+ F SL DF  R D +++N+R+LE+LV AGA 
Sbjct: 839  MAIRYALAAVKNVGGAAMDALVSARDADRAFKSLGDFADRADPQQVNKRLLENLVKAGAF 898

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R +L +SL+ + ++       R +   N+FA + G    ++ L+         R
Sbjct: 899  DGLHPNRAELFESLETVVRHVSAAASERGSSQVNLFAVDGGREPTRLRLKDRPDWPPMER 958

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKG----YEESVATIRGNNIRLAAMVVSKQQK 1007
             + E   LGFY S HPLD Y   L ++ +      + E+ A      + LA +VV KQ +
Sbjct: 959  LKEEFDALGFYLSAHPLDAYAESLGRLSVVPSDRAFAETRAKGGSTRLTLAGIVVGKQIR 1018

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++ G+R  +V  ++    +E   F
Sbjct: 1019 TSKSGNRFAFVQLTDRTGVFEVTLF 1043


>gi|253682356|ref|ZP_04863153.1| DNA polymerase III subunit alpha [Clostridium botulinum D str. 1873]
 gi|253562068|gb|EES91520.1| DNA polymerase III subunit alpha [Clostridium botulinum D str. 1873]
          Length = 1166

 Score = 1099 bits (2842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1062 (34%), Positives = 595/1062 (56%), Gaps = 57/1062 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  H+ YSLL+G+  +  ++ +       ++AITD   +F  ++F +KA  AGI+P
Sbjct: 5    NFVHLHTHTEYSLLDGSGKIGGLISRAKELGMKSLAITDHGTMFGCVDFYKKAKDAGIKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +       M  +          +VLLV   +GY+ L+++VS+  +        
Sbjct: 65   IIGCEIYVSSNS---MHIKRLDAENRNHHLVLLVKNEQGYKNLMKIVSKASIEG-FYYKP 120

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+   +L+E  +EGLI L+   +G +       + + A +  L +K +F +  Y+ LQ H
Sbjct: 121  RVDHEYLKE-HSEGLIALSACLAGEVSYNLLNGTKEKAREIALFYKDIFKEGFYIELQYH 179

Query: 190  RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                + R ++ +V+LA   ++PLVATN+  ++ +ED ++H+VL+ +     +  +DR + 
Sbjct: 180  GIDKQLRVNEMLVELARELDIPLVATNDVHYIKKEDAKSHEVLLCIQTGKTLDDEDRMKY 239

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             P + YLK+  EM   FS + +ALENT +IA  C+F    H   LP F   E  D     
Sbjct: 240  EPQNFYLKSPEEMYETFSYVSDALENTNKIADECNFDYIFHESKLPNFPLPEGID----H 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               ++     GLE+R  +          + ++RL++EL+VI  M +  YFLIV DF +++
Sbjct: 296  FEYMKELCYKGLEIRYEK-------VTDELKERLEYELDVIKEMGYVDYFLIVWDFFRFS 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I  GPGRGS AGS+ AY L IT IDP++++L+FERFLNP+R+SMPD D DFC +RR
Sbjct: 349  HEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDFCYERR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + V+QI+TFG++  +A +RDVGRA+   Y++VDR+ K+IP      +
Sbjct: 409  GEVIDYVVEKYGKDNVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTVLGITI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   RE    D  +  L+++++ LEGL RH STHAAG+VI  +PL   VP+ +
Sbjct: 469  D-KALEMNPELREVYDKDTRIKELIDVARDLEGLPRHTSTHAAGVVIASQPLVNYVPLSK 527

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                +  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + +   +++DL  I F+D 
Sbjct: 528  --NEEAIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIELIKKNTGIEIDLDKINFEDE 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y++L    T+G+FQLES+GM   ++ ++P+ +EDIIA +SLYRPGP+  I  Y   KN
Sbjct: 586  NVYNMLGKGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAEIPKYIKNKN 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              + I  I P ++ +L  T GV++YQEQVMQI + L+GYS+  +D++RRAM KK  + M+
Sbjct: 646  NPKNIEYITPELEGILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHKVME 705

Query: 727  KQKERFISGASK-----------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            ++++ FI G  +           NGIS+  A  I++ +  FA Y FNKSHAAAY V++Y 
Sbjct: 706  EERKNFIYGIEENGKVVVPGCLRNGISEESANKIYDQMMDFASYAFNKSHAAAYGVVAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++  +YP EF+AA +     N +K+  + + A+Q +I+ +PP +N     F V + +I
Sbjct: 766  TAYLVHYYPTEFMAAMLNSVRGNSDKVAIYIRAAKQMDIETLPPDINKSFGKFTVQNGKI 825

Query: 836  YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+AIK VG      I+++  +   F+S  DFC+++    +N+R++ESL+ AG  D F
Sbjct: 826  RFGLSAIKNVGENIIDVIVKSREEKGEFNSFVDFCNKISMGSINKRMVESLIKAGVFDSF 885

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-SDKITLEKFSVENSSVRFE 953
            G  R QLL   + I        K       ++F +    F   +I        N   +  
Sbjct: 886  GIYRSQLLAVYEKIIDSVVSQRKKNIEGQVSLFGNFDNEFKGVEIKYPAIDEFNKKSKLA 945

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV----------------------ATIR 991
             E+ + G Y +GHPL+ Y+ IL+        + +                          
Sbjct: 946  MEKEMTGLYLTGHPLEDYEEILKNATSAKTTDIIMDESLEEDLVDEVTLHVEEQNSKIKD 1005

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            G+ + +  ++ +  +K T+  S + ++   +     E   FP
Sbjct: 1006 GDKVIIGGLITNVTRKITKTNSMMAFINLEDLYSSIEVIIFP 1047


>gi|212636262|ref|YP_002312787.1| DNA polymerase III subunit alpha [Shewanella piezotolerans WP3]
 gi|212557746|gb|ACJ30200.1| DNA polymerase III alpha subunit [Shewanella piezotolerans WP3]
          Length = 1156

 Score = 1099 bits (2842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1045 (39%), Positives = 603/1045 (57%), Gaps = 37/1045 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G   +  IL K++    PA+A+TD  N+   ++F      AG
Sbjct: 2    SDPLFVHLRVHSDFSMSDGLSKVKPILAKVSELGMPAVALTDQTNMCGLVKFYGGCHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG +  + +                + SI  +    EGY  L  L+S  YL     
Sbjct: 62   IKPIIGTEFWVQVP-----------GVDELCSITAIAMNNEGYSSLTLLISDAYLRGHID 110

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL +   +GLI+L+GG  G + RA   ++    +  +  ++  F DR Y+ L
Sbjct: 111  DRAVIDHEWLAKY-NDGLILLSGGRHGDVGRALLKDNKAQVDSLIEFYQTHFPDRYYLEL 169

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R     V+LA   +LP+VATN  +F   E +EAH++ +A++    ++   R
Sbjct: 170  LRTGRPDEERYLHMAVELAQAKDLPVVATNQVVFNKPEQFEAHEIRVAISDGFTLADPRR 229

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   Y K+  EM  +F D+PEA++NTVEIA+RC+  ++++   LP F   +     
Sbjct: 230  PKKYSDQQYFKSSEEMCELFEDIPEAIQNTVEIAKRCNVTVRLNEYFLPNFPTGDL---- 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L + +  GLE RL         +     +Y +RLD EL VI  M F GYFLIV 
Sbjct: 286  -TIEDFLVDVSEKGLEERLEFLFPDPEVRAEKRPEYDERLDIELKVINEMGFPGYFLIVM 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW K N+IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 345  EFIQWGKDNDIPIGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V + YG + V+QIITFG++ AKA +RDVGR    PY  VDR+ K+IP 
Sbjct: 405  FCMDRRDEVIDHVADLYGRDAVSQIITFGTMAAKAVIRDVGRVQGHPYGFVDRISKMIPA 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A   +   +E+      V  L+++ + LEG+ R+A  HA G+VI    ++ 
Sbjct: 465  EPGMTL-AKAFEVEPALQESYDGSEEVKDLIDMCRILEGVTRNAGKHAGGVVIAPTKITD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +          +V
Sbjct: 524  FSPIYCDSEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMVNAVKDKNGEDRV 583

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  I   D + + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 584  RIESISLTDPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 643

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   +  RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 644  SGMVDNFIERKHGREEVSYPDAEYQHESLKELLSPTYGIILYQEQVMQIAQVLAGYTLGG 703

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  G+ KNG+   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 704  ADMLRRAMGKKKPEEMAKQRGTFEEGSIKNGVDGPLSMKIFDLVEKFAGYGFNKSHSAAY 763

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP +F+AA M+ +MDN +KI     +  +  + ++PP VN     F 
Sbjct: 764  ALVSYQTLWLKTHYPSQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFRFT 823

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V D+  I Y + A+KGVG      I+EA  D PF  L DFC+R+D KKLNRRV+E L+ A
Sbjct: 824  VDDDLNIVYGIGAVKGVGEGPVDSILEARKDGPFTDLFDFCARIDLKKLNRRVIEKLICA 883

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVEN 947
            GALD  G  R  L+ +L    + A    K       ++F         DK      +   
Sbjct: 884  GALDNLGPHRAALVATLPEAIRAADQHAKAEAIGQHDMFGLLNNEPEDDKQQFVDCTPWP 943

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              V  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +  
Sbjct: 944  DKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTVKAAGLVVATRVM 1003

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+++G VT  + +   E   F
Sbjct: 1004 MTKRGAKMGLVTLDDKSARLEVMLF 1028


>gi|120599537|ref|YP_964111.1| DNA polymerase III subunit alpha [Shewanella sp. W3-18-1]
 gi|120559630|gb|ABM25557.1| DNA polymerase III, alpha subunit [Shewanella sp. W3-18-1]
          Length = 1157

 Score = 1098 bits (2841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1045 (40%), Positives = 608/1045 (58%), Gaps = 36/1045 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      AG
Sbjct: 2    SDPRFVHLRVHSDFSMSDGVAKVKPILAQVEALGMAAVALTDQNNFCGLVKFYSGCHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG    +          Q         ++ ++     GYQ L +++S+ YL  Q  
Sbjct: 62   IKPIIGADFWM----------QVPGFEGEFCALTIIAMNNVGYQNLTQIISQAYLRGQVA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V I   WL     EG+++L+G   G I +A    ++   E     ++  F +R ++ L
Sbjct: 112  GRVVIDQEWLLTY-NEGILLLSGAKEGDIGKALLKGNNTQVESLCEFYQTHFAERYFLEL 170

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R     V LA     P+VATN  +FL  ED++AH++ +A+     ++   R
Sbjct: 171  IRTGRPDEERYLHMAVALAQEKGFPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   YL++  EM  +F+D+P AL NTVEIA+RC+  ++++   LP F   +     
Sbjct: 231  PKKYSEQQYLRSEEEMCELFADIPAALSNTVEIAKRCNVTIRLYEYFLPNFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L + +  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -SIEDFLVDCSKKGLEERLAFLFPDPQVRAERRGEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  EPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +           V
Sbjct: 525  FAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  RIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   +  RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     F 
Sbjct: 765  ALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLTLIPPDVNKGLFKFT 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+ A
Sbjct: 825  VDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICA 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            GALD  G  R  ++ +L    + A    K +     ++F        D K    +     
Sbjct: 885  GALDSLGPHRASMMATLPEAMRAADQHAKAQAIGQHDMFGLLNSEPEDSKQQFVECIPWP 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +  
Sbjct: 945  DKIWLEGERETLGLYLTGHPINQYLKELKYYTSGRLKDVHPTERGKTVKAAGLVVATRVM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GS++G +T  + +   E   F
Sbjct: 1005 LTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|218885238|ref|YP_002434559.1| DNA polymerase III subunit alpha [Desulfovibrio vulgaris str.
            'Miyazaki F']
 gi|218756192|gb|ACL07091.1| DNA polymerase III, alpha subunit [Desulfovibrio vulgaris str.
            'Miyazaki F']
          Length = 1173

 Score = 1098 bits (2841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1036 (40%), Positives = 618/1036 (59%), Gaps = 24/1036 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YSLL+GA+ L ++  K      PA AITD  NL+ A+ F       GI+P
Sbjct: 3    DFVHLHCHTEYSLLDGAIRLKDLCAKAVDFGMPAAAITDHGNLYGAVYFYNTCKQFGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +      K +   +        +VLL    EGY  L++LVS  +L        
Sbjct: 63   IIGCEVYVANDHTDKTSELARVR----HHLVLLARDNEGYHNLVKLVSHGFLHG-FHYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+ +  L++  + G+  L+   +G + RA   +    A +    ++ ++    Y+ LQ +
Sbjct: 118  RVDMDLLRQY-SGGITALSACLAGQVPRALLRSGMDDAIRIAREYEAIYPGNFYLELQSN 176

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     ++++LA    LPLVATN+  +L   D EAHDVL+ +     V  + R R 
Sbjct: 177  GLKEQDELNEKLIELADHTGLPLVATNDCHYLEASDVEAHDVLLCIQTQAKVDDERRMRF 236

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + Y K+  EM   F+ +P+A+ NT  IA +C+   +    + P +   E   +    
Sbjct: 237  ETKELYYKSPEEMAKAFAHVPDAVANTGRIAEQCAVKFEFGKYVFPVYALPEGMTL---- 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+E R  +  GL+ RL +           Y +RL+ EL+VI +M F GYFLIV DFI WA
Sbjct: 293  EDEFRRLSREGLKRRLERHPNRDTIDHDLYWKRLELELDVIGQMGFPGYFLIVQDFINWA 352

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N IPVGPGRGS AGS+ A++L IT++DP+ ++LLFERFLN +R+SMPD D+DFC+ RR
Sbjct: 353  KDNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYNLLFERFLNIERVSMPDIDVDFCERRR 412

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVIRYV  KYG + VAQI TFG ++AKA +RDVGRAL M +++ DR+ KL+P D    V
Sbjct: 413  TEVIRYVGEKYGEDMVAQITTFGKMKAKAVVRDVGRALGMTFAETDRIAKLVPEDLKMTV 472

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +AI  +         DP + +LL++S +LEGL RHASTHAAG+V+ DRP+ + +P+YR
Sbjct: 473  K-KAIDAEPDLAALYKTDPQIRKLLDVSMRLEGLSRHASTHAAGVVVSDRPMREYLPLYR 531

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
              + +  VTQF+MK +EK GL+KFDFLGL+T+TL+Q SLD +A Q     DL  +  DD 
Sbjct: 532  GKKGE-IVTQFDMKMVEKVGLVKFDFLGLRTMTLVQDSLDEIARQGKTPPDLDTLALDDA 590

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
            ETY L +   T GIFQ+ESSGMRQ L  ++P C +D+IA+++LYRPGP+ + +V  +  R
Sbjct: 591  ETYELYSRGDTDGIFQVESSGMRQYLRMLKPSCFDDVIAMLALYRPGPLGSGMVDEFIKR 650

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+  +    P ++  L++T GVI+YQEQVMQIAQ+ +GY+L  AD+LRRAMGKK  EE
Sbjct: 651  KHGEVPVTYPLPSLEDCLRDTYGVIVYQEQVMQIAQIAAGYTLGGADLLRRAMGKKNAEE 710

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M +Q+ +F+ GA KNG+ K  A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K H+P
Sbjct: 711  MGQQRIKFVEGAQKNGVPKATADEIFDLMEKFAEYGFNKSHSAAYALISYYTAYLKVHFP 770

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF+AA +T EM N +K+ K+    +   I ++ P+V     +F V +  I + L  IK 
Sbjct: 771  TEFMAALLTSEMGNQDKLLKYVAACKDMGIAVLQPNVQASRREFTVHEGAIVFGLGGIKN 830

Query: 845  VGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG    R I++A  +   F SL D C RV+ +K+ +RVLESL+  GA DC G +R  +L 
Sbjct: 831  VGDEAIREIVDAREEGGVFASLLDLCMRVNLRKVTKRVLESLIKGGACDCLGCTRAGMLA 890

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI------TLEKFSVENSSVRFENEQR 957
            +LDN+   AQ   K++ +   ++F       +           ++    +   +   E+ 
Sbjct: 891  ALDNVVSKAQKRLKDKESNQVSLFTMVPEEPAVCPGIGFDCEEQQAQEWDDDQKLRFEKE 950

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             LGF+ + HPL  Y+  L ++ +   EE+     G +++ A +V   ++  T+KG+R+ +
Sbjct: 951  ALGFFLTSHPLQPYRKELFRLRLTPLEETRDMAPGMSLKTAVLVTGIKEHMTKKGARMAF 1010

Query: 1018 VTFSEPAKEYEANFFP 1033
            +   +     E  FFP
Sbjct: 1011 LQVEDLTASGECVFFP 1026


>gi|292492697|ref|YP_003528136.1| DNA polymerase III subunit alpha [Nitrosococcus halophilus Nc4]
 gi|291581292|gb|ADE15749.1| DNA polymerase III, alpha subunit [Nitrosococcus halophilus Nc4]
          Length = 1158

 Score = 1098 bits (2841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/1040 (42%), Positives = 619/1040 (59%), Gaps = 36/1040 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YS+++G + +  ++        PA+A+TD NN+F+ ++F + A A G++P
Sbjct: 4    SFVHLHLHTEYSMVDGLVRIRPLVRAAREAGMPAVAVTDQNNIFAMVKFYRAAQAEGVKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  + +             T       + LL     GY  L  L+SR Y   Q     
Sbjct: 64   IIGADVFLV----------DSTESSRASRVTLLCQNEGGYCNLSRLLSRAYSEGQYHGVP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+  +WLQ   ++GLI+L+GG  G + +A    ++  A+K L  ++ LF  R Y+ L R 
Sbjct: 114  RLQWNWLQSQ-SDGLIVLSGGREGDVGQALLAGNNIQAKKLLERWQALFPGRYYLELHRT 172

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
                +       V LA   + P+VATN+  FL  +D+EAH+  + +     +    RP  
Sbjct: 173  GREGEEDYLHGAVALALACDTPVVATNDVRFLRTQDFEAHEARVCIHEGRTLDDPRRPRH 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YL+  SEM  +F+DLPEALENTVEIARRC+  L + +  LP F   E   I    
Sbjct: 233  YSEQQYLRTSSEMAELFADLPEALENTVEIARRCNLELTLGSHYLPNFPVPEGLSI---- 288

Query: 308  ENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            E  L  +A  GLE RLA+       +      Y  RL  EL VI +M F GYFLIVADFI
Sbjct: 289  EAFLEVEARRGLEQRLAKLYPSETDREIKQPTYETRLAEELAVINQMGFPGYFLIVADFI 348

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAKKN IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+S+PDFDIDFC 
Sbjct: 349  RWAKKNGIPVGPGRGSGAGSLVAYALQITDLDPLAFDLLFERFLNPERVSLPDFDIDFCM 408

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRD VI YV + YG + V+QIIT+GS+ AKA +RDVGR L  PY  VD++ KLIP D  
Sbjct: 409  ERRDRVIEYVSHYYGRDHVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDQIAKLIPFDLK 468

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+ +    R     +  V  L+++++KLEGL R+A  HA G+VI  + L++ VP
Sbjct: 469  MTLD-KALEESEGLRARYEEEEEVRFLIDLARKLEGLTRNAGKHAGGVVIAPKKLTEYVP 527

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLS 599
             Y +  +   VTQF+   IE  GL+KFDFLGL+TLT++  +L  + Q+  +      DL+
Sbjct: 528  YYCEQGASGVVTQFDKDDIEAIGLVKFDFLGLRTLTIIDWALQAINQQRAQQGTAPLDLA 587

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            L+P +D E+Y LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+ + +
Sbjct: 588  LLPMNDPESYALLKRCATTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGM 647

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            V  Y NRK+G+ K+   HP ++P+LK T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAM
Sbjct: 648  VDDYINRKHGRAKVDYPHPALEPILKPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM KQ+  F  GA   G+ +  A  IF+L+ KFA+YGFNKSH+AAYA+I+YQTA
Sbjct: 708  GKKKPEEMAKQRAIFTEGAKARGVEEERATAIFDLMEKFAEYGFNKSHSAAYALIAYQTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIY 836
            ++K HYP  ++AA ++ +MDN EK+  F Q+ +  N++++PP VN     F   G N I 
Sbjct: 768  YLKAHYPAPYMAAVLSSDMDNTEKVAAFIQECQVMNLEVLPPDVNVSDYRFSAQGKNAIR 827

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y L AIKGVG      I+ E     P+  L +FC R+D +K+NRRVLE+L  +GALD  G
Sbjct: 828  YGLGAIKGVGAAALEGIIKEREQHGPYQDLFEFCRRIDLRKINRRVLEALNRSGALDPLG 887

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFEN 954
             +R  L  SL+     A+   +N +    ++F  +     S      +    +   R   
Sbjct: 888  ANRATLEASLETALALAEQHSRNTSLGQNDLFGLDCVLEGSQAGNYTETQEWDEEQRLAL 947

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-----NIRLAAMVVSKQQKKT 1009
            E+  LG Y SGHP+D Y+  LR++  +   E V+           + +A ++ S +  K 
Sbjct: 948  EKETLGLYLSGHPIDRYEQELRQIAPRRLAELVSQASNRLNYNQRVIIAGLIGSVRTSKA 1007

Query: 1010 RKGSRIGWVTFSEPAKEYEA 1029
            R+G R  +VT  + +   E 
Sbjct: 1008 RQGGRNAFVTLDDRSARLEV 1027


>gi|332095123|gb|EGJ00155.1| DNA polymerase III subunit alpha [Shigella boydii 5216-82]
          Length = 1144

 Score = 1098 bits (2841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1032 (40%), Positives = 608/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L     GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAVNNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL N  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGNALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|332098772|gb|EGJ03732.1| DNA polymerase III subunit alpha [Shigella boydii 3594-74]
          Length = 1144

 Score = 1098 bits (2840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1032 (40%), Positives = 609/1032 (59%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNG++  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGVNAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|212704482|ref|ZP_03312610.1| hypothetical protein DESPIG_02538 [Desulfovibrio piger ATCC 29098]
 gi|212672049|gb|EEB32532.1| hypothetical protein DESPIG_02538 [Desulfovibrio piger ATCC 29098]
          Length = 1157

 Score = 1098 bits (2840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1037 (40%), Positives = 616/1037 (59%), Gaps = 25/1037 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YSLL+GA+ + ++  +      PA AITD  NLF A +F       GI+P
Sbjct: 3    DFVHLHCHTEYSLLDGAIRVKDLCSRAKDFGMPACAITDHGNLFGAAKFFLTCKDFGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +      K +   +        ++LL    EGY  L++LVSR YL        
Sbjct: 63   IIGCEVYVCHDHLDKTSELARKRN----HLILLSENIEGYHNLVKLVSRSYLEG-FHYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+  + L++  +EGLI L+   +G I RA        A      +  ++ DR Y+ LQ +
Sbjct: 118  RVDKAMLRQY-SEGLICLSACIAGEIPRALNAGDMDGAIALAREYADIYPDRFYLELQSN 176

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++      ++++A   +LP+VATN+  +L+ +D +AH+VL+ +   T +    R R 
Sbjct: 177  SLPEQEIANKGLLEIADHLKLPIVATNDCHYLNADDADAHEVLLCIQTQTTMDDPKRMRF 236

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T D Y K+  EM ++F  LP++L NT EIA RC+  L +     P +   E   +    
Sbjct: 237  GTHDLYYKSGEEMEAVFGHLPQSLSNTAEIAERCNVELDMGHHYFPVYKLPEGASL---- 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++E R  A  GLE RL +       + Q YR RL +EL VI  M F GYFLIV +FI WA
Sbjct: 293  DSEFRRLAEEGLERRLEKHPNRANINPQAYRDRLQYELKVILEMGFPGYFLIVQEFINWA 352

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K + IPVGPGRGS AGS+ A++L IT++DPL ++LLFERFLN +R+S+PD D+DFC+ RR
Sbjct: 353  KDHGIPVGPGRGSAAGSLVAWSLRITNLDPLPYNLLFERFLNAERVSLPDIDVDFCERRR 412

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI+++ + YG + VAQI TFG+++AK  +RDVGRAL M +++ DR+ KL+P+D    +
Sbjct: 413  TEVIQHMVDTYGKDSVAQITTFGTMKAKGVVRDVGRALGMSFAETDRIAKLVPDDLKMTI 472

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            + +A+  +   +     DP V +LL+ +++LEGL RHASTHAAG+V+  RP+ + +P+Y 
Sbjct: 473  N-KALEAEPDLQNLYDTDPQVKKLLDTARRLEGLSRHASTHAAGLVVSPRPMDEFLPLYT 531

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
              R +L VTQF+    EK+GL+KFDFLGLKT+TL+Q +LD +  Q     DL  +P  D 
Sbjct: 532  GKRGEL-VTQFDGPMTEKSGLVKFDFLGLKTMTLIQDTLDNITLQGKTPPDLDNLPLTDA 590

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
             TY L     T GIFQ+ESSGMRQ L  ++P C ED+IA+++LYRPGP+ + +V  +  R
Sbjct: 591  ATYDLYARGDTDGIFQVESSGMRQYLRMLKPSCFEDVIAMLALYRPGPLGSGMVDEFIKR 650

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+  +V  H  +   L++T GVI+YQEQVMQIAQ+++ Y+L  AD+LRRAMGKK  E 
Sbjct: 651  KHGQVPVVYPHESLSDCLRDTYGVIVYQEQVMQIAQIIASYTLGGADLLRRAMGKKKPEA 710

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M K++ +F+ GA KNG+ K  A  IF+L+ KFA+YGFNKSH+AAYA ISY TA++K H+ 
Sbjct: 711  MAKERVKFVEGAQKNGVDKAKADEIFDLMEKFAEYGFNKSHSAAYAQISYFTAYLKVHHT 770

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEF+AA +T EM N EK+ K+    +   I ++ PSVN     F   + ++ + L  IK 
Sbjct: 771  VEFMAALLTSEMSNQEKLLKYISCCKDMGIDVVQPSVNASQRSFSAREGKVVFGLGGIKN 830

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG +    IM+A  D  + SL D C RVD +K+ +RVLE+L+  GA DCFG SR  LL +
Sbjct: 831  VGDSAITEIMDARKDGEYVSLFDMCCRVDLRKVTKRVLEALIKGGACDCFGVSRAALLAA 890

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-------TLEKFSVENSSVRFENEQR 957
            LD +   AQ   K + +   ++ A      +                  +   R +NE+ 
Sbjct: 891  LDTVVTRAQKKAKEKNSNQISLLAMAPQVEAKPQPGIGFDCPESGIPEMDEDQRLKNEKE 950

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIG 1016
             LGF+ + HPL  +   +R++ +   E++        +  A +VVS ++  T+ KG R+ 
Sbjct: 951  ALGFFLTSHPLQPFSREMRRLRLTTLEDARDLYPKAELSTAVLVVSLKEVITKSKGERMA 1010

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +V   +     E  FFP
Sbjct: 1011 FVGVEDLTGHAEVTFFP 1027


>gi|269138108|ref|YP_003294808.1| DNA polymerase III, alpha subunit [Edwardsiella tarda EIB202]
 gi|267983768|gb|ACY83597.1| DNA polymerase III, alpha subunit [Edwardsiella tarda EIB202]
 gi|304558152|gb|ADM40816.1| DNA polymerase III alpha subunit [Edwardsiella tarda FL6-60]
          Length = 1162

 Score = 1098 bits (2840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1047 (39%), Positives = 611/1047 (58%), Gaps = 40/1047 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL VHS YS+++G      ++ K+AA   PA AITD  NL   ++F   A  AGI+
Sbjct: 4    PRFIHLHVHSDYSMIDGLAKTAPLVKKVAALGMPAFAITDHTNLCGLVKFYGSAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P++G            +  + +T    + ++ +L    EGYQ L +L+S  Y    G + 
Sbjct: 64   PLVGA----------DVLVRSETMGDELSALTILACDNEGYQNLTQLISHAYQRGYGAEG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL      GLI+L+G   G + +     +  +  + +  +++ F D  ++ L R
Sbjct: 114  PTIDRDWLIAY-RAGLILLSGARHGDVGKLLLRGNQTLVGECVDFYQQHFPDSYFLELVR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V+LA   +LPLVATN+  FL   D++AH++ +A+     +    RP 
Sbjct: 173  TGRPDEESYLHLAVELAQQRDLPLVATNDVRFLEASDFDAHEIRVAIHDGYTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   Y+++  EM  +F+DLPEAL+N+VEIA+RC+  +++    LP+F   E       
Sbjct: 233  NYSAQQYMRSEEEMCELFADLPEALQNSVEIAKRCNVTIRLGQYFLPQFPTGEM-----S 287

Query: 307  EENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  KA  GLE RL         +      Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVKKAHEGLEERLSFLFPDEADRARLRPPYDERLEIELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLAFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDRVIDHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  +      D+
Sbjct: 527  PLYCDAEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRARQGLDPVDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDQKSFDILQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E++        H  + P+L+ T GVI+YQEQVMQIAQ+L+GYSL  AD
Sbjct: 647  MVDNFIDRKHGREELSYPDREWQHESLKPVLEPTYGVILYQEQVMQIAQVLAGYSLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA  NG++  +A++IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  LLRRAMGKKKPEEMAKQRSVFEEGARNNGVNGELAMHIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTHYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKTHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            D     Y + AIKGVG      I+EA        F  L D C+R D+KKLNRRV+E L+ 
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARTDTKKLNRRVMEKLIM 886

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL++  K A+   +       ++F    +     + +       
Sbjct: 887  SGAFDRLGPHRAALMSSLNDALKAAEQHARAEAIGQADMFGVLAEEPEQVEQSYGSVPPW 946

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               +  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V+  +
Sbjct: 947  PVQMVLDGERETLGLYLTGHPITQYLKEIERYAGGGRLKDMHPTDRGKMTTAVGLVLGAR 1006

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1007 VMTTKRGNRIGMCTLDDRSGRLEVMLF 1033


>gi|170718818|ref|YP_001783421.1| DNA polymerase III subunit alpha [Haemophilus somnus 2336]
 gi|168826947|gb|ACA32318.1| DNA polymerase III, alpha subunit [Haemophilus somnus 2336]
          Length = 1158

 Score = 1098 bits (2840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1046 (40%), Positives = 604/1046 (57%), Gaps = 38/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S++ G   +  ++      +  A+A+TD  N    + F  +A ++G
Sbjct: 2    SQPRFVHLRVHSDFSMINGITKVKPLIKACVQHEMVAMALTDFTNFCGLVRFYGEAQSSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG            +  +       +  + LL    EGY  +  L+S+ Y      
Sbjct: 62   VKPIIGA----------DVLVKSDLLGDELFELTLLAKNNEGYHNITLLLSKAY-ERGYY 110

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  SWL E   EG+I+L+GG +G + +    N+S   E  +  +++ F D  Y++L
Sbjct: 111  NLPYIDQSWLAE-HHEGIIILSGGRNGDVGKKLLKNNSADVETAVAFYQEYFPDHFYLSL 169

Query: 187  QRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R  Q  + LA   +LPLVATN+  FLS ED+EAH++ +A+     +    R
Sbjct: 170  SRTGRSDEDRYIQSALILAQQKQLPLVATNDVCFLSPEDFEAHEIRVAIHDGYTLDDPKR 229

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   Y ++  EM  +F+D+P ALENTV IA+RC+  +++    LP+F   +     
Sbjct: 230  PKLYSSQQYFRSEQEMCELFADIPTALENTVLIAQRCNVTIRLGTYFLPKFPTGDL---- 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +    ++Y  RL  EL+VI +M F GYFLIV 
Sbjct: 286  -SPEDFLIQKSKEGLEERLQTLFPDPQVRSEKRKEYDDRLQTELDVINKMGFPGYFLIVM 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 345  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 405  FCMDKRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLIPA 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   ++ +A   + R  E    D  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 465  DPGMTLT-KAFEAEPRLSEIYNNDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLITD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R VK      
Sbjct: 524  FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLVKEGKSAV 583

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+S IP +D ++++LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP++
Sbjct: 584  DISTIPLNDPDSFNLLKKAETTAVFQLESRGMKDLIKKLQPDCFEDIIALVALFRPGPLE 643

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G E +        H  + P+L+ T GVI+YQEQVMQIAQ+L+GYSL  
Sbjct: 644  SGMVQNFIDRKHGVEPVSYPDVKYQHESLKPILEPTYGVIVYQEQVMQIAQVLAGYSLGG 703

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM  Q++ F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 704  ADLLRRAMGKKKPEEMAAQRDIFEKGAIAKGIDGDLAMKIFDLVEKFAGYGFNKSHSAAY 763

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT EMDN +KI  F  +  +  + I+PP +NT    F 
Sbjct: 764  ALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVSFYDECLRMGLTIVPPDINTGKHHFS 823

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN    Y + AIKGVG      I+ A      F  L D C+RVD K++NRR  E+L+ 
Sbjct: 824  VNDNGEIVYGIGAIKGVGEVPINAIVSAREQGGIFKDLFDLCARVDLKQINRRTFENLIK 883

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946
            +GA D  G  R  L Q+L++  K +    K+      ++F     +  D +         
Sbjct: 884  SGAFDKLGPHRAALAQNLEDALKASDQHAKDEAIGQVDMFGVLTSSHEDVETAYAHTPRW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +     + E+  LG Y S HP+  Y   L         E     RG    +  ++V+ + 
Sbjct: 944  SEKQILDGERETLGLYLSSHPITRYLKELSHYSSTRLNELSPNTRGKISTVCGLIVALRF 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+KG+R+G  T  + +   +   F
Sbjct: 1004 AVTKKGNRLGIATLDDRSGLLDITLF 1029


>gi|300816224|ref|ZP_07096447.1| DNA polymerase III subunit alpha [Escherichia coli MS 107-1]
 gi|309796361|ref|ZP_07690770.1| DNA polymerase III subunit alpha [Escherichia coli MS 145-7]
 gi|312970285|ref|ZP_07784467.1| DNA polymerase III subunit alpha [Escherichia coli 1827-70]
 gi|300531431|gb|EFK52493.1| DNA polymerase III subunit alpha [Escherichia coli MS 107-1]
 gi|308120065|gb|EFO57327.1| DNA polymerase III subunit alpha [Escherichia coli MS 145-7]
 gi|310337783|gb|EFQ02894.1| DNA polymerase III subunit alpha [Escherichia coli 1827-70]
 gi|323176499|gb|EFZ62091.1| DNA polymerase III subunit alpha [Escherichia coli 1180]
          Length = 1144

 Score = 1098 bits (2840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1032 (40%), Positives = 609/1032 (59%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|313114111|ref|ZP_07799663.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
            KLE1255]
 gi|310623520|gb|EFQ06923.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
            KLE1255]
          Length = 1169

 Score = 1098 bits (2839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1056 (35%), Positives = 591/1056 (55%), Gaps = 42/1056 (3%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +++ L  +  FVHL +H+ YSLL+GA  ++ ++D++    Q AIA TD   ++  ++F +
Sbjct: 1    MSEALPNTRPFVHLHIHTEYSLLDGACRIDQLMDRVKECGQTAIACTDHGVMYGCVQFYK 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AGI+PIIGC++ +  +      N+          ++LL     GY+ LI++VS  +
Sbjct: 61   AAKKAGIKPIIGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLIKMVSAAF 116

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-G 179
            +        RI    L++   EGLI L+   +G + +A      + A+   L ++ LF  
Sbjct: 117  VEG-FYSKPRIDKELLEKYH-EGLICLSACLAGEVPQAILAGDYERAKAAALWYRDLFGE 174

Query: 180  DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +  Y+ LQ H    D     Q+++LA    +P+ ATN+S +L +ED +   +L+ +    
Sbjct: 175  ENYYIELQDHGLEEDNTVLPQLIKLARETGIPMAATNDSHYLRKEDAKMQGILLCIQTGK 234

Query: 239  VVSQKDRPRVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             +   D+     D +  K   EM  +FS +PEA ENT +IA +C+F        +P +  
Sbjct: 235  TIQDADKMEFQTDEFYVKTTDEMYELFSMVPEACENTAKIAEQCNFDFDFGHTKIPYYKA 294

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                D Q             GLE R            Q  + RL++E+ V+ +M ++ Y+
Sbjct: 295  PNGMDNQA----FFEKLCWEGLERRYGPDV------PQANKDRLEYEIGVVKKMGYTNYY 344

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV D++ +AK   IPVGPGRGSGAGS+ AY++ ITDIDP+R++L+FERFLNP+R+SMPD
Sbjct: 345  LIVWDYVNYAKSQGIPVGPGRGSGAGSIAAYSVGITDIDPIRYNLIFERFLNPERVSMPD 404

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC +RR EVI YV  KYG + VAQI+TFG++ A+ A+RDVGR + +PY QVD + K
Sbjct: 405  FDVDFCYERRQEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGIPYQQVDVVAK 464

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
             +P +    +  +A+      +     DP V  L++ + K+EG+ RHASTHAAG+VI   
Sbjct: 465  QVPMELKMTLK-RALEVSPELKRMYDTDPQVTELIDTALKVEGMPRHASTHAAGVVITPE 523

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            P    +P+       LPVTQFNM  IE+ GL+K DFLGL+TLT++  +   + +   +  
Sbjct: 524  PTDYYLPL--ATNDGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIHDAETAVQKHHPEFS 581

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  + +DD +TY +L    T G+FQLESSGM+Q L G+QP  +EDIIAL+SLYRPGP+D+
Sbjct: 582  IQKLDYDDPDTYRMLGQGDTEGVFQLESSGMKQVLVGLQPQNLEDIIALISLYRPGPMDS 641

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y   ++  +KI    P +  +L  T G I+YQEQVMQI + L+G+S  +AD +RRAM
Sbjct: 642  IPTYLRNRHEPDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRAM 701

Query: 718  GKKIKEEMDKQKERFIS----------GASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             KK    M+ ++E F+           G   NGIS+ +A  I++ ++ FA Y FNKSHAA
Sbjct: 702  SKKKHAVMEAEREHFVYGCTDPGNECPGCVANGISEKVANEIYDEMSSFASYAFNKSHAA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
             YA +++QTA++K HYP EF+AA +T  +DN +K+ ++  +  +  I+++PP VN     
Sbjct: 762  CYAYVAFQTAYLKCHYPSEFMAALLTSVLDNTDKVIEYSGECARLGIKVLPPDVNVSNGG 821

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F   G  +I + L A+K VG     ++++   +KP+ SL DFC R+   +LNRR +E L+
Sbjct: 822  FTADGSGQIRFGLNAVKNVGRNLIENVVKGRQNKPYTSLYDFCKRMHGNELNRRAVECLI 881

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEKGTFSDKITLE 941
             AGA D  G +R   +++++ I K  +   +   +   ++F+      + G   D   ++
Sbjct: 882  KAGAFDHLGNNRHSHVEAVEGILKSIETDSRRNLDGQLDLFSVMSGEAQGGASEDNYEIK 941

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA----TIRGNNIRL 997
            +    +     + E+ V G Y SGHPLD Y+    ++     ++          G  +R+
Sbjct: 942  QLPEYSHKELLQQEKEVSGLYLSGHPLDAYREQSARIASHTIKDLTGEDAHVRDGEKVRI 1001

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               VV  +   T+  S + + +  +     E   FP
Sbjct: 1002 VCAVVKSRMMTTKSNSMMAFTSVEDLTGTMEVIVFP 1037


>gi|153829941|ref|ZP_01982608.1| DNA polymerase III subunit alpha [Vibrio cholerae 623-39]
 gi|262161397|ref|ZP_06030507.1| DNA polymerase III alpha subunit [Vibrio cholerae INDRE 91/1]
 gi|148874576|gb|EDL72711.1| DNA polymerase III subunit alpha [Vibrio cholerae 623-39]
 gi|262028708|gb|EEY47362.1| DNA polymerase III alpha subunit [Vibrio cholerae INDRE 91/1]
          Length = 1143

 Score = 1098 bits (2839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1031 (40%), Positives = 604/1031 (58%), Gaps = 37/1031 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G++PIIG         
Sbjct: 1    MVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA-------- 52

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                T Q +     +  + LL     GY+ L  L+S+ YL    +    I  +WL E   
Sbjct: 53   --DFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HA 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L R    D        
Sbjct: 110  EGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    RP   +P  YL++ +E
Sbjct: 170  LDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL N+VEIA+RC+  +++    LP F            E+ L  K+  GL
Sbjct: 230  MCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGP
Sbjct: 285  EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLE-KAFIAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
              +E   AD  V  L++  + LEG  R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  ALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V +  IP DD  ++  
Sbjct: 524  QFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRN 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  AISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP
Sbjct: 704  MAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843
             EF+AA MT +MDN EK+     + +   + ++PP +N+    F V DN  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L DFC+R+D KK+N+RV+E L+ AGALD  G  R  ++
Sbjct: 824  GVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             S+D+  + A    +       ++F          +    +       VR E E+  LG 
Sbjct: 884  ASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y +GHP+D Y   L K       E+  T R  ++ +A +V++ +   T++G+RIG +T  
Sbjct: 944  YLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLD 1003

Query: 1022 EPAKEYEANFF 1032
            + +   E   +
Sbjct: 1004 DRSGRMEVMLY 1014


>gi|300824093|ref|ZP_07104213.1| DNA polymerase III subunit alpha [Escherichia coli MS 119-7]
 gi|300523370|gb|EFK44439.1| DNA polymerase III subunit alpha [Escherichia coli MS 119-7]
 gi|315616331|gb|EFU96949.1| DNA polymerase III subunit alpha [Escherichia coli 3431]
 gi|323160196|gb|EFZ46155.1| DNA polymerase III subunit alpha [Escherichia coli E128010]
 gi|323181692|gb|EFZ67106.1| DNA polymerase III subunit alpha [Escherichia coli 1357]
          Length = 1144

 Score = 1098 bits (2839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1032 (40%), Positives = 609/1032 (59%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|126701019|ref|YP_001089916.1| DNA polymerase III DnaE [Clostridium difficile 630]
 gi|254977018|ref|ZP_05273490.1| DNA polymerase III DnaE [Clostridium difficile QCD-66c26]
 gi|255094345|ref|ZP_05323823.1| DNA polymerase III DnaE [Clostridium difficile CIP 107932]
 gi|255102599|ref|ZP_05331576.1| DNA polymerase III DnaE [Clostridium difficile QCD-63q42]
 gi|255308424|ref|ZP_05352595.1| DNA polymerase III DnaE [Clostridium difficile ATCC 43255]
 gi|255316098|ref|ZP_05357681.1| DNA polymerase III DnaE [Clostridium difficile QCD-76w55]
 gi|255518759|ref|ZP_05386435.1| DNA polymerase III DnaE [Clostridium difficile QCD-97b34]
 gi|255651937|ref|ZP_05398839.1| DNA polymerase III DnaE [Clostridium difficile QCD-37x79]
 gi|260684901|ref|YP_003216186.1| DNA polymerase III DnaE [Clostridium difficile CD196]
 gi|260688559|ref|YP_003219693.1| DNA polymerase III DnaE [Clostridium difficile R20291]
 gi|306521687|ref|ZP_07408034.1| DNA polymerase III DnaE [Clostridium difficile QCD-32g58]
 gi|115252456|emb|CAJ70299.1| DNA polymerase III DnaE subunit alpha [Clostridium difficile]
 gi|260211064|emb|CBA66425.1| DNA polymerase III alpha subunit [Clostridium difficile CD196]
 gi|260214576|emb|CBE07133.1| DNA polymerase III alpha subunit [Clostridium difficile R20291]
          Length = 1189

 Score = 1098 bits (2839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1062 (35%), Positives = 605/1062 (56%), Gaps = 55/1062 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  F HL VH+ YSLL+G   +  ++ +       +IAITD   +F  ++F + A   GI
Sbjct: 2    NKDFAHLHVHTEYSLLDGFSRVKKLIKRAKELNMSSIAITDHGCMFGVIDFYKTAIKEGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC++    +    + ++          +VLL    EGY+ LI++VS  Y+      
Sbjct: 62   KPIIGCEVYTAARG---LRDKDPNYDKYQGHLVLLAKNMEGYKNLIKIVSTSYVEG-FYY 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
              R+ +  L++   +G+I L+   +G + RA    + + A++  L ++ +F  +  ++ +
Sbjct: 118  KPRVDMEELKK-HNKGIIALSACLAGDVARALMNRNYEKAKQFALDYRDIFGEENFFLEI 176

Query: 187  QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++    S +V+L+    +PLVATN+  ++++ED + HDVLM +     ++  +R
Sbjct: 177  QDHNLPEQKEVNSGLVKLSKETGIPLVATNDVHYVNKEDSKIHDVLMCIQMGKTLNDPNR 236

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R   D  YLK+R EM  +F    EA++NTV+IA  C+     +   LP++   E     
Sbjct: 237  MRFGSDEFYLKSREEMEELFPYALEAIDNTVKIADMCNVEFDFNTIHLPKYDVPEG---- 292

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               E  LR     GL+ R           + +  +RL++EL+VI +M +  YFLIV DFI
Sbjct: 293  YTPETYLRELCFNGLKERY-------DNPSNEILERLNYELDVIEKMGYVEYFLIVWDFI 345

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             ++K+NNI VGPGRGS AGS+ AY L ITDIDP+++SLLFERFLNP+R+SMPD DIDFC 
Sbjct: 346  NFSKENNIIVGPGRGSAAGSIVAYTLKITDIDPIKYSLLFERFLNPERISMPDIDIDFCY 405

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI YV+ KYG + VAQIITFG++ AKAA+RDVGR L + Y++VD++ K IP    
Sbjct: 406  ERREEVIDYVKRKYGDDHVAQIITFGTMGAKAAIRDVGRVLDIGYNKVDKVAKEIPFALG 465

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  +   +E    DP    ++ IS+++EG+ RHASTHAAG+VI   P+ + VP
Sbjct: 466  MTID-KALDTNPNLKELYDQDPETKEIINISKQIEGMLRHASTHAAGVVISKNPVDEYVP 524

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF------LAQRGVKVDL 598
            +Y+    D   TQF M  +E+ GL+K DFLGL+TLT+++ +LD       +     K+D 
Sbjct: 525  LYK--HQDAITTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLDLIEKNRVIKNYTEKIDF 582

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S + +DD + Y +L++  TLG+FQLES+GMR  ++ ++PD  EDI+A +SL+RPGP+D+I
Sbjct: 583  SKMDYDDPKVYEMLSSGNTLGVFQLESAGMRSFMKQLKPDNFEDIVAGISLFRPGPMDSI 642

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y   K+  + +  +H  + P+++ T G ++YQEQVMQ+ + L GYS   +D++RRAM 
Sbjct: 643  PAYIKNKSNPKDVTYLHEKLKPIMEVTYGCLVYQEQVMQVVRDLGGYSYGRSDLVRRAMS 702

Query: 719  KKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            KK  + M+++++ FI             G  +NG+ + IA  IF+ +  FA Y FNKSHA
Sbjct: 703  KKKMDVMEEERQYFIHGKFDEDGNIEIAGCIRNGVEEEIANKIFDDMIDFARYAFNKSHA 762

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAY V++Y+TA++KT+YPVEF+AA +T  M N +K+ ++ ++ +   I ++PP +N    
Sbjct: 763  AAYGVLAYETAYLKTYYPVEFMAALITSVMGNTDKVVEYIRECKALEIDVLPPDINKSFS 822

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
             F V  + I + LAA+K VG     +I+     +  F  L D   R+D K  N+RV+ESL
Sbjct: 823  KFSVEGDNIRFGLAAVKNVGVNIINNIIAERESNGLFVDLVDLVKRLDQKDTNKRVIESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-----ITL 940
            +  GA D    +R  L+   +++ +      K       ++F     +  D       +L
Sbjct: 883  IKCGAFDNISENRASLMAGYESLLESVSMDRKKNVQGQISLFDAFGDSEEDSDFQQIYSL 942

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM---------GIKGYEESVATIR 991
             K        R   E+ VLG Y SGHPL  ++  L++           +K  EES   + 
Sbjct: 943  PKRQEYEERERLNLEKEVLGMYVSGHPLSQFEKELQEKTSMDNGKLNSLKEEEESYLQMN 1002

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              ++ +  M+V+K  K T++   + ++   +     E   FP
Sbjct: 1003 ETDVIMGGMIVTKTIKTTKRNEIMAFIELEDLYGAIEIIVFP 1044


>gi|323165885|gb|EFZ51667.1| DNA polymerase III subunit alpha [Shigella sonnei 53G]
          Length = 1144

 Score = 1098 bits (2839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1032 (40%), Positives = 609/1032 (59%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|113460344|ref|YP_718405.1| DNA polymerase III subunit alpha [Haemophilus somnus 129PT]
 gi|112822387|gb|ABI24476.1| DNA polymerase III, alpha subunit [Haemophilus somnus 129PT]
          Length = 1158

 Score = 1098 bits (2839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1046 (40%), Positives = 604/1046 (57%), Gaps = 38/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S++ G   +  ++      +  A+A+TD  N    + F  +A ++G
Sbjct: 2    SQPRFVHLRVHSDFSMINGITKVKPLIKACVQHEMVAMALTDFTNFCGLVRFYGEAQSSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG            +  +       +  + LL    EGY  +  L+S+ Y      
Sbjct: 62   VKPIIGA----------DVLVKSDLLGDELFELTLLAKNNEGYHNITLLLSKAY-ERGYY 110

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  SWL E   EG+I+L+GG +G + +    N+S   E  +  +++ F D  Y++L
Sbjct: 111  NLPYIDQSWLAE-HHEGIIILSGGRNGDVGKKLLKNNSADVETAVAFYQEYFPDHFYLSL 169

Query: 187  QRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R  Q  + LA   +LPLVATN+  FLS ED+EAH++ +A+     +    R
Sbjct: 170  SRTGRSDEDRYIQSALILAQQKQLPLVATNDVCFLSPEDFEAHEIRVAIHDGYTLDDPKR 229

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   Y ++  EM  +F+D+P ALENTV IA+RC+  +++    LP+F   +     
Sbjct: 230  PKLYSSQQYFRSEQEMCELFADIPTALENTVLIAQRCNVTIRLGTYFLPKFPTGDL---- 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +    ++Y  RL  EL+VI +M F GYFLIV 
Sbjct: 286  -SPEDFLIQKSKEGLEERLQTLFPDPQVRSEKRKEYDDRLQTELDVINKMGFPGYFLIVM 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNPDR+SMPDFD+D
Sbjct: 345  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPDRVSMPDFDVD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 405  FCMDKRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLIPA 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   ++ +A   + R  E    D  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 465  DPGMTLT-KAFEVEPRLSEIYNNDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLITD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R VK      
Sbjct: 524  FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLVKEGKSAV 583

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+S IP +D ++++LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP++
Sbjct: 584  DISTIPLNDPDSFNLLKKAETTAVFQLESRGMKDLIKKLQPDCFEDIIALVALFRPGPLE 643

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G E +        H  + P+L+ T GVI+YQEQVMQIAQ+L+GYSL  
Sbjct: 644  SGMVQNFIDRKHGVEPVSYPDVKYQHESLKPILEPTYGVIVYQEQVMQIAQVLAGYSLGG 703

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM  Q++ F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 704  ADLLRRAMGKKKPEEMAAQRDIFEKGAIAKGIDGDLAMKIFDLVEKFAGYGFNKSHSAAY 763

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT EMDN +KI  F  +  +  + I+PP +NT    F 
Sbjct: 764  ALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVSFYDECLRMGLTIVPPDINTGKHHFS 823

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN    Y + AIKGVG      I+ A      F  L D C+RVD KK+NRR  E+L+ 
Sbjct: 824  VNDNGEIVYGIGAIKGVGEVPINAIVSAREQGGIFKDLFDLCARVDLKKVNRRTFENLIK 883

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946
            +GA D  G  R  L Q+L++  K +    K+      ++F     +  D +         
Sbjct: 884  SGAFDKLGPHRAALAQNLEDALKASDQHAKDEAIGQVDMFGVLTSSHEDVETAYAHTPRW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +     + E+  LG Y S HP+  Y   L         E     RG    +  ++V+ + 
Sbjct: 944  SEKQILDGERETLGLYLSSHPITRYLKELSHYSSTRLNELSPNTRGKISTVCGLIVALRF 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+KG+R+G  T  + +   +   F
Sbjct: 1004 AVTKKGNRLGIATLDDRSGLLDITLF 1029


>gi|300923024|ref|ZP_07139091.1| DNA polymerase III subunit alpha [Escherichia coli MS 182-1]
 gi|300420651|gb|EFK03962.1| DNA polymerase III subunit alpha [Escherichia coli MS 182-1]
          Length = 1144

 Score = 1098 bits (2839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1032 (40%), Positives = 609/1032 (59%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIK
Sbjct: 764  AEFMAAGMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|332097598|gb|EGJ02575.1| DNA polymerase III subunit alpha [Shigella dysenteriae 155-74]
          Length = 1144

 Score = 1097 bits (2838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1032 (40%), Positives = 607/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L     GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAVNNTGYQNLTLLISKAYQRGYGPAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L   A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKSAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL N  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGNALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|323157979|gb|EFZ44081.1| DNA polymerase III subunit alpha [Escherichia coli EPECa14]
          Length = 1144

 Score = 1097 bits (2837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1032 (40%), Positives = 608/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +  + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNRALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|157376278|ref|YP_001474878.1| DNA polymerase III subunit alpha [Shewanella sediminis HAW-EB3]
 gi|157318652|gb|ABV37750.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 1157

 Score = 1097 bits (2837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1045 (40%), Positives = 605/1045 (57%), Gaps = 36/1045 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G   +  I+ K+     PA+A+TD  NL   ++F      AG
Sbjct: 2    SDPRFVHLRVHSDFSMSDGLAKVKPIIGKVTELGMPAVALTDQTNLCGLVKFYGACHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+P+IG    + +    K           + S+ +L    +GY  L  L+S  YL     
Sbjct: 62   IKPLIGADFWVKVPGFDK----------DLCSVTVLAMDNDGYLNLTLLISDAYLRGHID 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL +  ++GLI+L+GG  G + RA    +    +  +  ++  F DR Y+ L
Sbjct: 112  DRAVIDHGWLAKY-SKGLILLSGGRLGDVGRALLKGNQAQVDSLVEFYQTHFPDRYYLEL 170

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R     V+LA    LP+VATN  +F S + +EAH++ +A++    ++   R
Sbjct: 171  LRTGRPDEERYLHMAVELATEKGLPVVATNQVVFNSPDLFEAHEIRVAISDGFTLADPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  + + Y K+  +M  +F D+PEA++NTVEIA+RC+  +++    LP F   +     
Sbjct: 231  PKKYSAEQYFKSSEQMCELFEDIPEAIDNTVEIAKRCNVTVRLGEYFLPNFPTGDL---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L   +  GLE RL         +      Y +RLD EL V+ +M F GYFLIV 
Sbjct: 287  -SIEDFLVEVSEKGLEERLEFLFPDPEVRAEKRPAYDERLDVELKVVNQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW K  +IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID
Sbjct: 346  EFIQWGKDQDIPIGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDID 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ K++P 
Sbjct: 406  FCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMVPA 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A   +   +E+  AD  V  L+++ + LEG+ R+A  HA G+VI    ++ 
Sbjct: 466  EPGMTL-AKAFEVEPALQESYDADEEVKDLIDMCRTLEGVTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +        V
Sbjct: 525  FAPIYCDAEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKLKRLGKDPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  RIESIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   +  RK+G+E +        H  +  +L+ T G+I+YQEQVMQIAQ+L+GYSL  
Sbjct: 645  SGMVDNFIERKHGREAVSYPDAEYQHESLQWVLEPTYGIILYQEQVMQIAQVLAGYSLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NGI   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRGTFEEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA M+ +MDN +KI     +  +  + ++PP VN   + F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVILVDECERMGMPLLPPDVNKGLLKFN 824

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V D  +I Y + AIKGVG      I+ A  D PF  L DFC+RVD KKLN+R++E L+ A
Sbjct: 825  VDDEGKIVYGIGAIKGVGDGPVESILSARKDGPFKDLFDFCARVDLKKLNKRIMEKLICA 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            GALD  G  R  +L +L    + A    K       ++F        D K    + +   
Sbjct: 885  GALDNLGPHRAAMLATLPEAIRAADQNAKAEAIGQHDMFGLLNSDPEDVKQQFVECTPWP 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              V  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +  
Sbjct: 945  DKVWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVVATRVM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GS++G VT  + +   E   F
Sbjct: 1005 MTKRGSKMGLVTLDDKSARLEVMLF 1029


>gi|330839090|ref|YP_004413670.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
 gi|329746854|gb|AEC00211.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
          Length = 1131

 Score = 1097 bits (2837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1038 (37%), Positives = 602/1038 (57%), Gaps = 31/1038 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  +  ++ +       ++AITD   ++  ++F ++A  
Sbjct: 1    MTKIP-FAHLHVHTCYSLLDGASRIPELIARTKELGMDSVAITDHGAMYGVIDFYKEAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIGC+  +  +     T   +        ++LL    EGY+ L++LVS       
Sbjct: 60   QGIRPIIGCEAYLAPESRFDRT---EVRGTRYYHLILLAENDEGYRSLVKLVSLANTEGM 116

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
                 R+    L++   +GLI L+   +G I +A      + AEK +  +  +F  +  +
Sbjct: 117  -YYKPRVDKDILRKYH-KGLICLSACVAGEIPQAILRGERERAEKLVEEYIDIFGRENFF 174

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H   D     + V++LA    + LVATN+  ++ +ED EAHDVL+A+     V  
Sbjct: 175  LEIQDHGIPDEKTAFAGVIELAEKFGVGLVATNDIHYVHKEDTEAHDVLLAIQTGKGVHD 234

Query: 243  KDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              R R    + Y+++  EM  +F D PEAL NT +IA RC    +     LP F   E  
Sbjct: 235  PTRMRYAEGEFYMRSPEEMQELFHDHPEALANTQKIAERCKVDFEFGHLHLPNFPLPEGM 294

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 ++  LR      L +R  +   A        R+RLD+EL++I RM +  YFLIV 
Sbjct: 295  ----TDDAYLRQLCEENLSLRYEKITPA-------VRERLDYELSIIHRMGYDSYFLIVW 343

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++A+   I VGPGRGS AGS+ AY L IT++DPL++ LLFERFLNP+R++MPD DID
Sbjct: 344  DFIKYARGEGIAVGPGRGSAAGSIVAYLLGITNLDPLKYELLFERFLNPERVTMPDIDID 403

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC  RR+EVI YV+ +YG + VAQIITFG++ AK A+RDVGRAL+M Y+ VDR+ K +P+
Sbjct: 404  FCYIRREEVIDYVKRRYGADHVAQIITFGTMAAKGAIRDVGRALEMTYASVDRVAKAVPS 463

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +  +A+AD   FR          RL++ ++ LEGL RH+STHAAG+VI   PL+ 
Sbjct: 464  ELGITLD-RALADSQDFRSIYEESDETKRLIDFARDLEGLPRHSSTHAAGVVIARNPLTD 522

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
             VP+   V     VT+++   +E+ GL+K DFLGL+TLT++  +L  + + RGV +D+  
Sbjct: 523  YVPVQ--VSDGTLVTEYDKDHVEELGLLKMDFLGLRTLTVIADALKNIKKSRGVTIDIDT 580

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P +D +T  +L    T  +FQ+ES+GM   ++ +QP   +D+I  V+LYRPGP+ + +V
Sbjct: 581  MPLEDEKTAEMLCRGDTGAVFQMESAGMTNLVKDLQPKNFQDLIPTVALYRPGPLGSGMV 640

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   ++GK+K+  +HPL++P+LKET GV++YQEQVMQ+ Q+L+ ++L +AD+LRRAMG
Sbjct: 641  TDFIAGRHGKKKVTYLHPLLEPILKETFGVVLYQEQVMQVVQVLANFTLGQADILRRAMG 700

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  E +  Q+E ++ G  +NGI   +A  IF+LL  FADYGFNKSH+AAYA++++QTA+
Sbjct: 701  KKKHEVLMSQRETYMKGTRENGIDDALAEKIFDLLTHFADYGFNKSHSAAYALVAWQTAY 760

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K HYP EF+AA +T  MD  +K+  + +  R+  I+I+PP VN    +F V    I + 
Sbjct: 761  LKAHYPQEFMAAMLTSIMDTNDKVGVYIELCRRMGIKILPPDVNASEANFSVDGAAIRFG 820

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            LAA++ VG    + +     +   F SL DFC+RVD +  N+RVLESL+  GA D  G  
Sbjct: 821  LAAVRNVGEAAIKSLAAVREEGGAFTSLLDFCTRVDMRTANKRVLESLIKCGAFDSLGAH 880

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R QLL  L+ +   A     +  +    +F       ++ + L      +S  R   E+ 
Sbjct: 881  RSQLLAVLERVIDVAARKHADAASGQIGLFGEAAMQEAEDVALPDIDEADSVQRLAWEKE 940

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRI 1015
              GF+ +GHPLD ++  ++   +    + +   +     +R+  ++ S ++  T+KG  +
Sbjct: 941  NTGFFITGHPLDRHEKKIK--NLVPIGDILDGKKKERQLVRIGGLISSAKRIATKKGDTM 998

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++   +     E   FP
Sbjct: 999  CFLELEDYTHSVEVVVFP 1016


>gi|167624880|ref|YP_001675174.1| DNA polymerase III subunit alpha [Shewanella halifaxensis HAW-EB4]
 gi|167354902|gb|ABZ77515.1| DNA polymerase III, alpha subunit [Shewanella halifaxensis HAW-EB4]
          Length = 1177

 Score = 1096 bits (2836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1048 (39%), Positives = 601/1048 (57%), Gaps = 37/1048 (3%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            ++   P FVHL+VHS +S+ +G   +  I+ K+A    PA+A+TD  N+   ++F +   
Sbjct: 20   HIMSDPRFVHLRVHSDFSMSDGLSKVKPIIAKVAELGMPAVALTDQTNMCGLVKFYEACH 79

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
              G++PIIG    + +             F    SI  L    +GY  L  L+S  YL  
Sbjct: 80   GNGVKPIIGTDFWVKVP-----------GFDEFCSITALAMDNKGYSNLTLLISDAYLRG 128

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                   I   WL +   EGLI+L+G   G + RA    +    +  +  +K  F DR Y
Sbjct: 129  NINDKAVIDQEWLVKY-NEGLIILSGAKDGDVGRALLKENQNQVDSLIDFYKSNFPDRYY 187

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L R    D  R     V LA   +LP+VATN  +F   E ++AH++ +A+     ++ 
Sbjct: 188  LELLRTGRPDEERYLHMAVALAEQKDLPVVATNQVVFNKPEQFDAHEIRVAIYDGFTLAD 247

Query: 243  KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RP+  +   Y K+  EM  +F D+PEA++NTVEIA+RC+  +++H   LP F   +  
Sbjct: 248  PRRPKKYSDQQYFKSSEEMCELFEDIPEAIQNTVEIAKRCNATVRLHEYFLPNFPTGDL- 306

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L + +  GLE RL         +     +Y +RLD EL VI +M F GYFL
Sbjct: 307  ----TIEDFLVDVSEKGLEERLEFLFPDPEVRAEKRPEYDERLDIELKVINQMGFPGYFL 362

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW K N+IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDF
Sbjct: 363  IVMEFIQWGKDNDIPIGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDF 422

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ K+
Sbjct: 423  DVDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKM 482

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP +P   +  +A   +   +E+   D  V  L+++ + LEG+ R+A  HA G+VI    
Sbjct: 483  IPAEPGMTL-AKAFEVEPGLQESYDGDEEVKDLIDMCRILEGVTRNAGKHAGGVVIAPTK 541

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRG 593
            ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +         
Sbjct: 542  ITDFSPIYCDTEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMVNSVKEKNGE 601

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              V +  I   D + + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPG
Sbjct: 602  EPVRIESISLTDPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPG 661

Query: 654  PIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +   +  RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+L+GY+
Sbjct: 662  PLQSGMVDNFIERKHGREEVSYPDAEYQHESLQELLSPTYGIILYQEQVMQIAQVLAGYT 721

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+
Sbjct: 722  LGGADMLRRAMGKKKPEEMAKQRGTFEEGAIANGVDGPLSMKIFDLVEKFAGYGFNKSHS 781

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+KTHYP +F+AA M+ +MDN +KI     +  +  + ++PP VN    
Sbjct: 782  AAYALVSYQTLWLKTHYPAQFMAAVMSADMDNTDKIVTLVDECERMGMPLIPPDVNKGLF 841

Query: 827  DFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             F V ++  I Y + A+KGVG      I++A  + PF  L DFC+R+D KKLNRRV+E L
Sbjct: 842  RFTVDEDLNIVYGIGAVKGVGEGPVDSILKARENGPFKDLFDFCARIDLKKLNRRVIEKL 901

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + AGALD  G  R  ++ +L    + A    K       ++F        D K    + +
Sbjct: 902  ICAGALDNLGPHRAAMIATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQRFVECT 961

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ 
Sbjct: 962  PWPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTMKAAGLVVAT 1021

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+++G VT  + +   E   F
Sbjct: 1022 RVMMTKRGAKMGLVTLDDKSARLEVMLF 1049


>gi|206602357|gb|EDZ38838.1| DNA polymerase III, alpha subunit [Leptospirillum sp. Group II '5-way
            CG']
          Length = 1201

 Score = 1096 bits (2836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1045 (39%), Positives = 611/1045 (58%), Gaps = 21/1045 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL VH+ YSLL+GA  ++ ++ K  A+  PAIA+TD  NLF A+EF Q A  
Sbjct: 1    MSSTDQFVHLHVHTQYSLLDGANKIDPLIRKARAENMPAIAMTDHGNLFGAIEFFQTAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMT---------NQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
             G++PIIGC++ I  +     +         +QG+        ++LL     GY+ L+++
Sbjct: 61   HGVKPIIGCEVYITPRSRFDRSDLYFGGDGPHQGRKINNASFHLILLAENDTGYRNLLKI 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L        RI L  L     EGLI L+G   G I        +  A      F+
Sbjct: 121  VSLSHLEG-FYYRPRIDLELLSRYH-EGLIALSGCLKGQISYMLTRGDTDRAYATAGLFR 178

Query: 176  KLF-GDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++F  +  +  +Q +   D+     +++ L+    +PLVATN+  +L  ED   HD+L+ 
Sbjct: 179  EIFGPENYFFEVQANGLEDQRIANREIIGLSKKLSIPLVATNDCHYLEREDSVPHDILLC 238

Query: 234  VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +     +    R R   D  YLK   EM+  F +LPEA+ENT+ IA R    + +    +
Sbjct: 239  LQTGKTLEDPARLRFGSDEFYLKTPREMIRSFEELPEAIENTLRIAERIDVSIDLQTTHM 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P +   E               +  GL+ R  + A +       Y +RL+ E+ VI +M 
Sbjct: 299  PSYRLDEIQGQTTTVPELFVRTSREGLDARFLENAFSDAEKT-LYLERLEREIQVIQKMG 357

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            + GYFLIV DFI+ A++  IPVGPGRGS AGSV A++L IT+IDP+RF LLFERFLNP+R
Sbjct: 358  YEGYFLIVWDFIRKAREMGIPVGPGRGSAAGSVVAWSLRITNIDPIRFGLLFERFLNPER 417

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +S+PD D+DFC +RR EVI+YV ++YG +RVA I TFG++ AK ++RDVGR L M Y++V
Sbjct: 418  VSLPDIDVDFCMNRRGEVIQYVVDRYGMDRVAMIATFGTMGAKGSIRDVGRVLGMTYAEV 477

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            DR+ K+IPN     +  +A+ ++   R     DP ++ L  +S+KLEG+ RH+S HAAG+
Sbjct: 478  DRVAKMIPNSLDMTLE-KALEENPDLRSLLEKDPRMEELFSLSRKLEGITRHSSIHAAGV 536

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI   PL + VP+ +    +  VTQF    +EK GL+KFDFLGL TLTL+  + + +   
Sbjct: 537  VISREPLLEHVPLMKGANGE-IVTQFTKDDVEKVGLVKFDFLGLTTLTLIHGAENRIRAH 595

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                    IP DD  TY LL+   TLGIFQLES GM   +  MQP+  ED+IAL++LYRP
Sbjct: 596  TPDFSADRIPLDDPRTYRLLSEGKTLGIFQLESRGMTDLIMKMQPETFEDLIALLALYRP 655

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GPI++ +V  +  RK    +I    P ++P+L+ET GVI+YQEQVMQIA +L+G+SL EA
Sbjct: 656  GPINSGMVDDFIKRKKNPREIRYELPELEPVLRETYGVIVYQEQVMQIANVLAGFSLGEA 715

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM K +++F+ GA + G  K  A ++FEL+A FA YGFNKSH+AAYA
Sbjct: 716  DLLRRAMGKKKPEEMAKMQDKFVEGAVRKGFPKEKATHVFELMAYFAGYGFNKSHSAAYA 775

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +ISYQTA++KTHYP+E  AA +T  +D+ EKI  F   A+   I+++ P +N    DF +
Sbjct: 776  LISYQTAYLKTHYPLELWAALLTNALDDTEKIGVFLAGAKDMGIEVLAPDINQSEFDFAI 835

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                RI + L A+K VG      I+EA A D PF    DF  R+  KK+NRRV+E+L+ A
Sbjct: 836  LPGSRILFGLGAVKNVGKQAVDCILEARAQDGPFTDFPDFLKRIVGKKVNRRVIEALIRA 895

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA    G  R   ++SLD++  +A+  +  + +  +++F+ ++G  S    L +    + 
Sbjct: 896  GAFRSLGIRRAVAMESLDDLLAWAEKQKSGKGSMQKSLFSEDQGGRSFGPPLREVPEWDE 955

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             +    E+  LGFY + HP+  Y  +L K+  +      A   G  +R+ A+V + ++ K
Sbjct: 956  RMLLREEKNALGFYLTSHPMARYADLLLKLDTRSTRSLEAISEGETVRVFAVVSALREVK 1015

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T+KG ++  +T  +     EA  FP
Sbjct: 1016 TKKGDKMAQLTLLDMEGTIEAVLFP 1040


>gi|220904502|ref|YP_002479814.1| DNA polymerase III, alpha subunit [Desulfovibrio desulfuricans subsp.
            desulfuricans str. ATCC 27774]
 gi|219868801|gb|ACL49136.1| DNA polymerase III, alpha subunit [Desulfovibrio desulfuricans subsp.
            desulfuricans str. ATCC 27774]
          Length = 1160

 Score = 1096 bits (2835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1038 (40%), Positives = 612/1038 (58%), Gaps = 24/1038 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YSLL+GA+ + ++  +      PA AITD  NLF A  F Q     GI P
Sbjct: 3    DFVHLHCHTEYSLLDGAIRIKDLCARAKDFGMPACAITDHGNLFGAAYFYQGCKDFGINP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I GC++ +      K T+           ++LL     GY  L++LVS  +L D      
Sbjct: 63   IFGCEVYVCHDHTDKKTDSPLAR--RRHHLILLAQNKTGYHNLVKLVSHGFL-DGFYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L++  +EGLI L+   +G I RA   +   +A K    +  ++ +R Y+ LQ +
Sbjct: 120  RVDKGLLRKY-SEGLICLSACIAGEIPRAILADDMDLARKLTHEYADIYPNRFYLELQSN 178

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +  + ++ LA T  LPLVATN+  +L+ +D EAH+VL+ +   T +    R + 
Sbjct: 179  GLKEQEKANAGLIDLAETCNLPLVATNDCHYLNADDAEAHEVLLCIQTQTTMDDPKRMQF 238

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + Y K+  EM   F  +PEAL NT  IA  C+  L       P +   E   +    
Sbjct: 239  GTHELYYKSIEEMEKSFGHVPEALANTARIAEACNVELDFGNHYFPVYQLPEGASM---- 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+E R  A  GLE RL         + Q YR RL +EL VI  M F  YFLIV +FI WA
Sbjct: 295  ESEFRRLAEEGLEKRLVNHPDRDQLNPQTYRDRLQYELRVILEMGFPSYFLIVQEFINWA 354

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N+IPVGPGRGS AGS+ A+AL IT++DP+ ++LLFERFLN +R+S+PD D+DFC+ RR
Sbjct: 355  KNNDIPVGPGRGSAAGSLVAWALRITNLDPIPYNLLFERFLNSERVSLPDIDVDFCERRR 414

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +VI+++   YG   VAQI TFG+++AK  +RDVGRAL M +++ DR+ KL+P D    +
Sbjct: 415  GDVIKHMVETYGEGSVAQITTFGTMKAKGVVRDVGRALGMSFAETDRIAKLVPADLKMTI 474

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +    +  L D  V  LL+ +++LEGL RHASTHAAG+V+ D+P+ + +P+Y 
Sbjct: 475  K-KALESEPELEKLYLEDQQVKHLLDTARRLEGLARHASTHAAGLVVSDKPMKEYLPLYL 533

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
              R +L VTQF+    EKAGL+KFDFLGLKT+TL+Q +LD ++ Q     +L  +P  D 
Sbjct: 534  GKRGEL-VTQFDGPMTEKAGLVKFDFLGLKTMTLIQDTLDNISLQGQAPPNLDNLPLTDA 592

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
            ETY L     T G+FQ+ESSGMRQ L  ++P C ED+IA+++LYRPGP+ + +V  +  R
Sbjct: 593  ETYELYARGETDGVFQVESSGMRQYLRMLRPTCFEDVIAMLALYRPGPLGSGMVDEFIKR 652

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+  ++  H  +   L++T GVI+YQEQVMQIAQ+++ Y+L  AD+LRRAMGKK  E 
Sbjct: 653  KHGQVPVIYPHESLTDCLRDTYGVIVYQEQVMQIAQIIASYTLGGADLLRRAMGKKKAEA 712

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M K++  F++GA KN IS+  A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K HY 
Sbjct: 713  MAKERVTFVAGAQKNNISEEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAYLKVHYK 772

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEF+AA +T EM N +K+ K+    +  +I ++ PSVN    +F   + ++ + L  IK 
Sbjct: 773  VEFMAALLTSEMGNQDKLLKYVSCCKDMDIDVVQPSVNRSQREFTAHEGKVVFGLGGIKN 832

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG    R I+EA   ++ F SL D C RV+ +K+ +RVLESL+  GA DCFG +R  +L 
Sbjct: 833  VGDEAIREIVEARQQEEEFASLFDLCCRVNLRKVTKRVLESLIKGGACDCFGVARAAMLA 892

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-------LEKFSVENSSVRFENEQ 956
            SLD +   AQ   K++++   ++ A      S                      +   E+
Sbjct: 893  SLDLVVARAQRKAKDKSSNQVSLLAMAPVAESAPQPGIGIDCAEAATPEMADEDKLRAEK 952

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRI 1015
              LGF+ + HPL  Y   +R++G+   E++     G  +R A +V S ++  T+ KG R+
Sbjct: 953  DALGFFLTSHPLQPYVREIRRLGLTTLEDARDMFPGAEVRCAVLVTSVREVITKSKGERM 1012

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +    +     E  FFP
Sbjct: 1013 AFAAVEDLTGHAEVTFFP 1030


>gi|309787142|ref|ZP_07681754.1| DNA polymerase III subunit alpha [Shigella dysenteriae 1617]
 gi|308924720|gb|EFP70215.1| DNA polymerase III subunit alpha [Shigella dysenteriae 1617]
          Length = 1144

 Score = 1096 bits (2835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1032 (40%), Positives = 609/1032 (59%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  +
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEED 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVSLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|327480169|gb|AEA83479.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri DSM 4166]
          Length = 1173

 Score = 1096 bits (2835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1060 (39%), Positives = 612/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +AA   PA+A+TD +N+ S ++F + A  AGI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKAVAAGGMPAVAVTDMSNMCSLVKFYKTAQGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  + +           G      +  + LL    +GY+ L EL+SR +   Q    V
Sbjct: 64   ICGADIWLA----------GCDEDGPLSRLTLLAMNPKGYRNLTELISRGWTEGQRNDLV 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W++E   EGLI L+G   G I  A       +A  RL  ++++F DR Y+ +QR 
Sbjct: 114  IIEREWVKEAA-EGLIALSGAKEGEIGHALLNGDEALAASRLAEWREVFADRFYLEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
            +R  D       V LA     PLVATN+  FL +ED+EAH+  + +     +    RPR 
Sbjct: 173  NRVNDEEHLHAAVALAERSGAPLVATNDVRFLKQEDFEAHETRVCIGEGRTLDDPRRPRT 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK   EM  +F+DLPEALENTVEIA+RC+  +Q+    LP F   E   I    
Sbjct: 233  YSDQQYLKTPEEMAELFADLPEALENTVEIAKRCNIEVQLGTYFLPNFPVPEGMTI---- 288

Query: 308  ENELRNKAVAGLEVR----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ LR  +  GLE R    L +         Q Y  RL+FEL  I +M F GYFLIV DF
Sbjct: 289  DDYLRQVSFEGLEERLEVLLPKDTPDYEAKKQVYIDRLEFELGTIIQMGFPGYFLIVMDF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 349  IKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D RD VI YV   YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP + 
Sbjct: 409  MDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 468

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +   R+    D     + E++ KLEG+ R    HA G+VI    L+   
Sbjct: 469  GMTLE-KAYEMEEPLRDFLAVDEDAREIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFA 527

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+  D      VTQF+   +E+AGL+KFDFLGL+TLT+++ +L+ + +         V++
Sbjct: 528  PIACDEEGGGLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWALETINREQAKKGLEPVNI 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + 
Sbjct: 588  DFIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 647

Query: 659  VV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V  + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ+++GY+L  AD
Sbjct: 648  MVDDFINRKHGRAEVSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGAD 707

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  FI G + NGI   +A NIF+L+ KFA YGFNKSH+AAY +
Sbjct: 708  MLRRAMGKKKPEEMAKQRGGFIEGCANNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 767

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQTAW+K H+P  F+AA ++ +M N +K+    ++ R   ++I PP VN     F V 
Sbjct: 768  VSYQTAWLKAHHPSPFMAAVLSADMHNTDKVVILIEECRSMKLRIDPPDVNVSEFKFTVN 827

Query: 832  -DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D RI Y L A+KGVG      I E  A+  PF  L DFC+R+D K++N+R LE+L+ +G
Sbjct: 828  DDGRIVYGLGAVKGVGEGPVEAIAECRAEGGPFKDLFDFCARIDLKRINKRTLEALIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            ALD  G                +R  LL +++   + A+   ++  + H ++F       
Sbjct: 888  ALDRLGPYFFEEAKAYQANIDRNRAVLLAAMEEAVQAAEQTARSAESGHMDLFGGLFAEP 947

Query: 935  SDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               +          +   R + E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  EADVYANHRNARELSLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLRPAR-- 1005

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++V+ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1006 GEQTIAGLIVNLRVMKNKKGDKMGFITLDDRSGRIEASLF 1045


>gi|312966321|ref|ZP_07780547.1| DNA polymerase III subunit alpha [Escherichia coli 2362-75]
 gi|312289564|gb|EFR17458.1| DNA polymerase III subunit alpha [Escherichia coli 2362-75]
 gi|323190416|gb|EFZ75691.1| DNA polymerase III subunit alpha [Escherichia coli RN587/1]
          Length = 1144

 Score = 1096 bits (2835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1032 (40%), Positives = 607/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLVFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG     A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|300902003|ref|ZP_07120030.1| DNA polymerase III subunit alpha [Escherichia coli MS 84-1]
 gi|301305320|ref|ZP_07211416.1| DNA polymerase III subunit alpha [Escherichia coli MS 124-1]
 gi|300405889|gb|EFJ89427.1| DNA polymerase III subunit alpha [Escherichia coli MS 84-1]
 gi|300839425|gb|EFK67185.1| DNA polymerase III subunit alpha [Escherichia coli MS 124-1]
 gi|315254986|gb|EFU34954.1| DNA polymerase III subunit alpha [Escherichia coli MS 85-1]
          Length = 1144

 Score = 1096 bits (2835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1032 (40%), Positives = 608/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFVDIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|254491862|ref|ZP_05105041.1| DNA polymerase III, alpha subunit subfamily, putative [Methylophaga
            thiooxidans DMS010]
 gi|224463340|gb|EEF79610.1| DNA polymerase III, alpha subunit subfamily, putative [Methylophaga
            thiooxydans DMS010]
          Length = 1161

 Score = 1096 bits (2834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1046 (39%), Positives = 616/1046 (58%), Gaps = 37/1046 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL +H+ YSL++G + +  ++  +A    PA+AITD +NLF+A++    A  AG+
Sbjct: 2    SKQFVHLHLHTDYSLIDGLVRVKPLVKAVAEAGMPAVAITDQHNLFAAVKLFNAAMQAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+G            +  +  +   +    VLL    EG+  L  L+SR Y+  Q   
Sbjct: 62   KPILGA----------DLRLKDPSDAKSSTRFVLLCMNLEGFHNLSRLLSRAYMEGQQLG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL E  ++GLI L+GG  G + +A   +     +++L  +++LF DR Y+ L 
Sbjct: 112  VPMIEADWL-EGQSDGLICLSGGREGVLGKALLNHQKDEIDQQLNFWQQLFPDRFYLELI 170

Query: 188  RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R    D  R  ++ V LA   ++P+VA+N+  FL  + +EAH+  + +     +    RP
Sbjct: 171  RTGREDEERFLRLAVALAGDRQIPVVASNDVRFLQPQHFEAHEAKVCIHDGRQLDDPRRP 230

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               +   YL++  +M+++F D+PEA+ENTVEIA+RC+  L +    LP F   E   I  
Sbjct: 231  RHYSEHQYLRSAEDMIALFDDIPEAIENTVEIAKRCNLQLSLGEHYLPDFPVPEGMTI-- 288

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +     ++  GL  RL      +  +  +   Y +RL  EL+VI  M F GYFLIVAD
Sbjct: 289  --DEFFSEESFKGLAERLEVLFPDSTQREANKDRYEERLQIELDVINSMGFPGYFLIVAD 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+S+PDFD+DF
Sbjct: 347  FIQWAKNNAVPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSLPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV   YG + V+QIITFG++ AKA LRDVGR L  PY  VD+L KL+P +
Sbjct: 407  CMDGRDRVIDYVSQHYGRDHVSQIITFGTMAAKAVLRDVGRVLGHPYGFVDQLAKLVPFE 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                ++ +A+  +   +E    +  V  L++++ +LEGL R+   HA G+VI  + L++ 
Sbjct: 467  LKMTLT-KALEQEPLLKERYNKEEEVKTLIDLALQLEGLTRNVGKHAGGVVIAPKVLTEY 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVD 597
             P+Y +      V+QF+   +E  GL+KFDFLGLKTLT++  +++ +     A+   K+D
Sbjct: 526  TPLYCEHNGAGLVSQFDKDDVESVGLVKFDFLGLKTLTVIDWAMNNVRTLLPAEEADKID 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ +P DD  T+ LL    T  +FQLES GM++ ++ +QPD  EDIIALV+L+RPGP+ +
Sbjct: 586  ITNLPLDDKPTFDLLKRCETTAVFQLESRGMKELVKRLQPDNFEDIIALVALFRPGPLQS 645

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  + NRK+G+ K+   H  ++P+L  T GVI+YQEQVMQIAQ+L+GYSL  AD+LRR
Sbjct: 646  GMVDDFVNRKHGRAKVDYPHQDLEPVLSPTYGVIVYQEQVMQIAQILAGYSLGGADMLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ++ F+ GA+   I +  A  IF+L+ KFA+YGFNKSH+AAYA+++YQ
Sbjct: 706  AMGKKKPEEMAKQRQIFLEGAAGRDIGEKEAGPIFDLMEKFAEYGFNKSHSAAYALVAYQ 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TAW+K HYP  F+AA ++ +MDN +K+     + R   + + PP VN   + F V D   
Sbjct: 766  TAWLKAHYPSAFMAAVLSADMDNTDKVVGLIDECRDMKLTVQPPDVNHSKIKFTVEDGTT 825

Query: 836  -YYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
              Y L AIKGVG +    I+        F+SL DFC RVD +K+NRRV+ESLV AGALD 
Sbjct: 826  IRYGLGAIKGVGESALAGIVSEREQGEAFESLYDFCRRVDMRKINRRVMESLVKAGALDS 885

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRF 952
             G  R  L  SL    + A    +++ +   ++F        +D   LE  +        
Sbjct: 886  LGGHRASLEASLSKAMQIADQHRRDKDSGQNDLFGLTPDSDSADDEPLEIAAEWAEQQLL 945

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA------TIRGNNIRLAAMVVSKQQ 1006
            ++E+  LG Y SGHP+D Y+  L +   K   E  A            +  A ++V+ + 
Sbjct: 946  QSEKETLGLYLSGHPIDRYEAELAEFIPKKINELDAPESKGYQRNEKPMLTAGLIVAIRT 1005

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
             K++ G R+ ++T  + +   E   F
Sbjct: 1006 MKSKNGGRMAFITLDDQSARLEVRVF 1031


>gi|256823112|ref|YP_003147075.1| DNA polymerase III subunit alpha [Kangiella koreensis DSM 16069]
 gi|256796651|gb|ACV27307.1| DNA polymerase III, alpha subunit [Kangiella koreensis DSM 16069]
          Length = 1161

 Score = 1096 bits (2834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1046 (39%), Positives = 609/1046 (58%), Gaps = 37/1046 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P F+HL++H+ YS+++  + +  ++      Q PAIA+TD  N+   ++F  ++ +AGI
Sbjct: 2    TPRFIHLKMHTEYSMVDSVVRIKPLIATCKEHQIPAIAMTDQMNMCGLVKFYSQSVSAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G            +  Q          +  L     GY  L  ++SR YL +Q + 
Sbjct: 62   KPIAGA----------DLLIQNPNDEDEHFRVTALCMNNTGYLNLKYVISRAYLKNQHRG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL E   EGLI+L+GG  G + +A    +   A   L  +   F DR Y+ LQ
Sbjct: 112  LPLVKKEWLPEYA-EGLIILSGGRQGDVGKALLAGNMDQAASNLGFWNHHFKDRFYLELQ 170

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R  +     QV+ LA     P+VATN+  F+ +ED++AH+  + +    V++   RP
Sbjct: 171  RTGRPQENEYIHQVIGLAQGASTPVVATNDVRFIDKEDFDAHEARVCINQGRVLADPRRP 230

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  +   YL++  EMV +F D+PEALEN+VEIA+RC+  +++    LP F   E   I  
Sbjct: 231  REYSEQQYLRSEQEMVELFEDIPEALENSVEIAKRCNLEMRLGEYFLPEFPIPEGMTI-- 288

Query: 306  EEENELRNKAVAGLEVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                     +  GLE RL Q     A       + Y +RL  EL+VI  M F GYFLIVA
Sbjct: 289  --AQYFEKVSKDGLEERLDQLFDRNADDFAEIRKAYDERLQIELDVINDMGFPGYFLIVA 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQW+K N +PVGPGRGSGAGS+ AYA+ ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 347  DFIQWSKNNGVPVGPGRGSGAGSLVAYAMKITDLDPLEYDLLFERFLNPERVSMPDFDVD 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RD VI YV  +YG   V+QIITFG++ AKA +RDVGR    PY  VD+L KLIP 
Sbjct: 407  FCMEGRDRVIDYVAERYGRNSVSQIITFGTMAAKAVIRDVGRVFSHPYGFVDKLAKLIPF 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +  +A   +         D  V  L ++++KLEG+ R+A  HA G+VI    L +
Sbjct: 467  EVGMTLE-KAFEQEPELPRLYEEDEDVRELWDLARKLEGVTRNAGKHAGGVVIAPNDLEE 525

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-----FLAQRGVKV 596
              P+Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +++        +    +
Sbjct: 526  FAPLYCDETGHNIVTQFDKDDVESAGLVKFDFLGLRTLTIIDWAIETANGIIAKKGEEPI 585

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ I  +D + + LL    T  +FQLES GM+  ++ ++P+  EDIIALV+L+RPGP+ 
Sbjct: 586  DITAIDTEDQQVFDLLQRADTTAVFQLESRGMKDLIKRLKPNRFEDIIALVALFRPGPLQ 645

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + NRK+G+E +        H  +  +L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 646  SGMVDNFINRKHGREIVSYPDANYQHESLKEILEPTYGIILYQEQVMQIAQVLAGYTLGG 705

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM+KQ+  F  GA KN +   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 706  ADILRRAMGKKKPEEMEKQRSIFKEGAIKNNVDGDLAMKIFDLVEKFAGYGFNKSHSAAY 765

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+++YQTAW+KTH+P  F+AA M+ +MDN +K+  + +DA   N+ I PP VN     F 
Sbjct: 766  ALVAYQTAWLKTHHPAAFMAAVMSSDMDNTDKVVTYVEDAANSNLTITPPDVNKGQYRFS 825

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  + RI Y + AIKGVG      I+ E  A+ P+  L DFCSRVD KK NRR LE+L+ 
Sbjct: 826  VDEEGRIVYGIGAIKGVGEGAIESIVNEREANGPYKDLFDFCSRVDLKKANRRTLEALIR 885

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-TFSDKITLEKFSVE 946
            AGA+D  G +R  L+ SLD   K A+   K++    +++F      T +++    +    
Sbjct: 886  AGAMDLIGPNRATLMASLDEAVKAAEQFNKSQAAGQDDLFGSVVATTATEQHQYIRVKPW 945

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                  + E+  LG Y +GHP+D Y P +++M I        T RGN+ R+  ++V  + 
Sbjct: 946  TDEQVLQGEKETLGLYLTGHPIDRYIPEIKQMSITRLRNLQPTGRGNSARVVGLIVGMRV 1005

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G ++  +T  + +   +   +
Sbjct: 1006 MNTKRGDKMAILTLDDKSGRCDVTVY 1031


>gi|83644688|ref|YP_433123.1| DNA polymerase III subunit alpha [Hahella chejuensis KCTC 2396]
 gi|83632731|gb|ABC28698.1| DNA polymerase III, alpha subunit [Hahella chejuensis KCTC 2396]
          Length = 1158

 Score = 1096 bits (2834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1045 (39%), Positives = 608/1045 (58%), Gaps = 40/1045 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F+HL++H+ +SL++G + +  ++ K+A    PA+A+TD +N+   +++ + A  AG++P
Sbjct: 3    DFIHLRIHTEFSLVDGLVKVKPLVKKLADMGMPAVAVTDQSNMCCLVKYYKAASGAGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G  + ++  D+                + L      GY+ L EL+SR +   Q     
Sbjct: 63   IVGADVWVENLDDPL----------APFRLTLFARNETGYRNLTELISRGFTEGQSHGRA 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +   W+     EGL+ L+G   G + +A      ++A +RL  + ++F D  Y+ LQR 
Sbjct: 113  IMKKDWIAAQA-EGLLALSGSKYGDVGQALLAGKQELARERLGVWMEMFPDAYYLELQRT 171

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
             R  D       V+LA     P+VATN+  FL  +D+EAH+  + +     +    R  R
Sbjct: 172  GRINDEECVHASVELALETGCPVVATNDVHFLERDDFEAHEARVCIHEGRTLDDPRRERR 231

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + + YLK   EM  +FSD+PEA+ NTVEIA+RC+  L++    LP +   E   I    
Sbjct: 232  FSEEQYLKTAEEMCELFSDIPEAIANTVEIAKRCNVSLRLGKYFLPNYPIPEGMTI---- 287

Query: 308  ENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +      +  GLE RLA    Q     G   Q Y  RL FEL++I +M F GYFLIV DF
Sbjct: 288  DEFFIKVSEEGLEERLATLLKQDDPEYGNKRQSYYDRLKFELDIITQMGFPGYFLIVMDF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IKWAKNNGVPVGPGRGSGAGSLVAYALKITDLDPLAYDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + RD VI YV   YG   V+QIITFG++ AKA +RDV R    PYS  DRL KLIP + 
Sbjct: 408  MEGRDRVIAYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGRPYSMGDRLSKLIPFEV 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +   RE    D     + E+++KLEG+ R+   HA G+VI    L+   
Sbjct: 468  GMTL-AKAYEQEEPLREYLTTDEDAAEIWEMARKLEGVTRNVGKHAGGVVIAPTKLTDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D      VTQF+   +E+AGL+KFDFLGL+TLT++  ++D + ++        +D+
Sbjct: 527  PLYCDETGSGLVTQFDKDDVEQAGLVKFDFLGLRTLTIVDWAVDIINRQHAEKGQPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD  T++LL    T  +FQLES GM++ +  + PDC EDIIALV+L+RPGP+ + 
Sbjct: 587  NFIPLDDAPTFNLLKHGETTAVFQLESRGMKELIRRLMPDCFEDIIALVALFRPGPLQSG 646

Query: 659  VV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V  + NRK+G+ ++   HP      + P+L+ T G+I+YQEQVMQIAQ+++GY+L  AD
Sbjct: 647  MVDDFINRKHGRAELAYPHPDYQLESLKPVLQPTYGIILYQEQVMQIAQVMAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQK  F+ G+   G+ + +A  IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  LLRRAMGKKKPEEMAKQKAIFVEGSINQGLEQDLAEKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQTAW+K HYP  F+AA +T +M N +K+    ++ R+  ++++ P VN     F V 
Sbjct: 767  VSYQTAWLKCHYPAPFMAAVLTADMQNTDKVVTLVEECRRMKLELVLPDVNNSSYTFTVD 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D +RI Y L A+KG+G    + I++A  +  PF  L DFC RVD +++N+R LE+LV +G
Sbjct: 827  DKHRIVYGLGAVKGLGEGPVQSILDARKEGGPFRDLFDFCQRVDLRRVNKRALEALVRSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVEN 947
            A+D  G SR +++ S++   + A    +N      ++F               E     +
Sbjct: 887  AMDKLGPSRARMMASINEAVRRADQHSRNEDAGMLDLFGEVVPETDPNPYSATEGMQEWS 946

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
               R + E+  LG Y +GHP D Y+  +R+       E        N+  A +VV+ +  
Sbjct: 947  DKERLKLEKETLGLYLTGHPFDEYEQEVRRFVRTPISELRPGKSPQNV--AGLVVAVRTM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
            K+++G  IG+ T  + +   E  FF
Sbjct: 1005 KSKRGGYIGFATLDDRSGRIEVTFF 1029


>gi|260887140|ref|ZP_05898403.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
 gi|260863202|gb|EEX77702.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
          Length = 1137

 Score = 1095 bits (2833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1039 (37%), Positives = 602/1039 (57%), Gaps = 31/1039 (2%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             + K P F HL VH+ YSLL+GA  +  ++ +       ++AITD   ++  ++F ++A 
Sbjct: 6    AMTKIP-FAHLHVHTCYSLLDGASRIPELIARTKELGMDSVAITDHGAMYGVIDFYKEAK 64

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
              GI+PIIGC+  +  +     T   +        ++LL    EGY+ L++LVS      
Sbjct: 65   KQGIRPIIGCEAYLAPESRFDRT---EVRGTRYYHLILLAENDEGYRSLVKLVSLANTEG 121

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRL 182
                  R+    L++   +GLI L+   +G I +A      + AEK +  +  +F  +  
Sbjct: 122  M-YYKPRVDKDILRKYH-KGLICLSACVAGEIPQAILRGERERAEKLVEEYIDIFGRENF 179

Query: 183  YVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ +Q H   D     + V++LA    + LVATN+  ++ +ED EAHDVL+A+     V 
Sbjct: 180  FLEIQDHGIPDEKTAFAGVIELAEKFGVGLVATNDIHYVHKEDTEAHDVLLAIQTGKGVH 239

Query: 242  QKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R R    + Y+++  EM  +F D PEAL NT +IA RC    +     LP F   E 
Sbjct: 240  DPTRMRYAEGEFYMRSPEEMQELFHDHPEALANTQKIAERCKVDFEFGHLHLPNFPLPEG 299

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                  ++  LR      L +R  +   A        R+RLD+EL++I RM +  YFLIV
Sbjct: 300  M----TDDAYLRQLCEENLSLRYEKITPA-------VRERLDYELSIIHRMGYDSYFLIV 348

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A+   I VGPGRGS AGS+ AY L IT++DPL++ LLFERFLNP+R++MPD DI
Sbjct: 349  WDFIKYARGEGIAVGPGRGSAAGSIVAYLLGITNLDPLKYELLFERFLNPERVTMPDIDI 408

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC  RR+EVI YV+ +YG + VAQIITFG++ AK A+RDVGRAL+M Y+ VDR+ K +P
Sbjct: 409  DFCYIRREEVIDYVKRRYGADHVAQIITFGTMAAKGAIRDVGRALEMTYASVDRVAKAVP 468

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            ++    +  +A+AD   FR          RL++ ++ LEGL RH+STHAAG+VI   PL+
Sbjct: 469  SELGITLD-RALADSQDFRSIYEESDETKRLIDFARDLEGLPRHSSTHAAGVVIARNPLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
              VP+   V     VT+++   +E+ GL+K DFLGL+TLT++  +L  + + RGV +D+ 
Sbjct: 528  DYVPVQ--VSDGTLVTEYDKDHVEELGLLKMDFLGLRTLTVIADALKNIKKSRGVTIDID 585

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P +D +T  +L    T  +FQ+ES+GM   ++ +QP   +D+I  V+LYRPGP+ + +
Sbjct: 586  TMPLEDEKTAEMLCRGDTGAVFQMESAGMTNLVKDLQPKNFQDLIPTVALYRPGPLGSGM 645

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            V  +   ++GK+K+  +HPL++P+LKET GV++YQEQVMQ+ Q+L+ ++L +AD+LRRAM
Sbjct: 646  VTDFIAGRHGKKKVTYLHPLLEPILKETFGVVLYQEQVMQVVQVLANFTLGQADILRRAM 705

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  E +  Q+E ++ G  +NGI   +A  IF+LL  FADYGFNKSH+AAYA++++QTA
Sbjct: 706  GKKKHEVLMSQRETYMKGTRENGIDDALAEKIFDLLTHFADYGFNKSHSAAYALVAWQTA 765

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYP EF+AA +T  MD  +K+  + +  R+  I+I+PP VN    +F V    I +
Sbjct: 766  YLKAHYPQEFMAAMLTSIMDTNDKVGVYIELCRRMGIKILPPDVNASEANFSVDGAAIRF 825

Query: 838  SLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAA++ VG    + +     +   F SL DFC+RVD +  N+RVLESL+  GA D  G 
Sbjct: 826  GLAAVRNVGEAAIKSLAAVREEGGAFTSLLDFCTRVDMRTANKRVLESLIKCGAFDSLGA 885

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R QLL  L+ +   A     +  +    +F       ++ + L      +S  R   E+
Sbjct: 886  HRSQLLAVLERVIDVAARKHADAASGQIGLFGEAAMQEAEDVALPDIDEADSVQRLAWEK 945

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSR 1014
               GF+ +GHPLD ++  ++   +    + +   +     +R+  ++ S ++  T+KG  
Sbjct: 946  ENTGFFITGHPLDRHEKKIK--NLVPIGDILDGKKKERQLVRIGGLISSAKRIATKKGDT 1003

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + ++   +     E   FP
Sbjct: 1004 MCFLELEDYTHSVEVVVFP 1022


>gi|90580986|ref|ZP_01236787.1| DNA polymerase III subunit alpha [Vibrio angustum S14]
 gi|90437864|gb|EAS63054.1| DNA polymerase III subunit alpha [Vibrio angustum S14]
          Length = 1159

 Score = 1095 bits (2833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1044 (38%), Positives = 613/1044 (58%), Gaps = 37/1044 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G   +  I+ K +    PA+A+TD  NL   ++F   A  AGI+
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKVKPIVKKASELSMPALAMTDFTNLCGLVKFYFAAHDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG               Q       +  + +L +  EGY+ L  L+S  Y     +  
Sbjct: 64   PIIGA----------DFKVQSAEMGDELFELTILAANNEGYKNLTLLISEAYQRGHVQHL 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL     EGLI+L+GG +G + +A    + ++ +  +  ++  F D  Y+ L R
Sbjct: 114  PVIDKEWLVN-HREGLIILSGGKNGDVGKALLKGNQKMVDGLVAFYQTHFPDSYYLELVR 172

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA   +LP+VATN+   L+ + ++AH++ +A+     +   +RP+
Sbjct: 173  TGRADEEAYLHFAVELAEKADLPVVATNDVRLLTADQFDAHEIRVAIHDGYTLVDPNRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   YL++  EM  +F+D+PEAL+N+VEIA+RC+  +++    LP F   +       
Sbjct: 233  LYSAQQYLRSEEEMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  IEDFLIAKSKEGLEERLEFLFPDPEVRAARRPEYDERLDIELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFDIDFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDIDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P +P
Sbjct: 408  MDKRDLVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPAEP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  +A  AD  V  L+++ + LEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAFDAEPQLGQAYDADEEVRDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R ++      ++
Sbjct: 527  PLYCDAEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRLIEQGKEPVNI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    +  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPMDDPKSFAMLQRSESTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E +        H  +  +L  T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  G+ KNG+   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRAVFEEGSIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQT W+K HYP EF+AA MT +MDN +KI     +  +  ++++PP VN     F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKIISLVDECHRMKLKLLPPDVNKGLYRFNVD 826

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  + Y + A+KGVG     +I+ A      F  L DFC+R+D+KK+N+RVLE L+ +G
Sbjct: 827  EDGAVVYGIGAVKGVGEGPIENIISAREKGGHFKDLFDFCARIDTKKVNKRVLEKLIKSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A+D  G +R  +L +LD+  K A    +       ++F          +           
Sbjct: 887  AMDRLGPNRAAMLATLDDAIKAASQHHQAEAFGQADMFGVLTAAPEEVENKYANIPEAPD 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             V  E E+  LG Y +GHP++ Y   L+       +++  T R     +A +V++ +   
Sbjct: 947  KVWLEGERETLGLYLTGHPINAYLSELKHYTTWRLKDAQQTGRDKVATVAGLVIAARVMT 1006

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G+RIG +T  + +   E   F
Sbjct: 1007 TKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|300993595|ref|ZP_07180451.1| DNA polymerase III subunit alpha [Escherichia coli MS 45-1]
 gi|300406518|gb|EFJ90056.1| DNA polymerase III subunit alpha [Escherichia coli MS 45-1]
 gi|315294588|gb|EFU53935.1| DNA polymerase III subunit alpha [Escherichia coli MS 153-1]
          Length = 1144

 Score = 1095 bits (2833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1032 (40%), Positives = 608/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAANNIGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG     A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|330504229|ref|YP_004381098.1| DNA polymerase III subunit alpha [Pseudomonas mendocina NK-01]
 gi|328918515|gb|AEB59346.1| DNA polymerase III subunit alpha [Pseudomonas mendocina NK-01]
          Length = 1176

 Score = 1095 bits (2832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1065 (40%), Positives = 619/1065 (58%), Gaps = 58/1065 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + +FVHL++H+ YSL++G + +  ++  +A    PA+A+TD +N+ S ++F + A  AG+
Sbjct: 2    TQAFVHLRLHTEYSLVDGLVRVKPLIKAVAGAGMPAVAVTDMSNMCSLVKFYKTAMGAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G  + +   +              +  + LL   A+GY+ L EL+SR +   Q   
Sbjct: 62   KPICGADIWMASAEE----------DGPLTRLTLLAMNAKGYRNLTELISRGWAEGQSND 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             V I   W+++   EGLI L+G   G + +A       +AE RL  +  +F DR Y+ +Q
Sbjct: 112  LVIIQRDWVKDAA-EGLIALSGAREGEVGQALLGGDEVLAEARLREWMSVFPDRFYLEVQ 170

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R  D       V LA   E PLVATN+  F+ ++D+EAH+  + +     +    RP
Sbjct: 171  RTSRVGDEEYLHAAVALADRVEAPLVATNDVRFIKQDDFEAHETRVCIGEGRTLDDPRRP 230

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +Q+    LP F       I  
Sbjct: 231  RNYSDQQYLKSAEEMWELFSDLPEALENTVEIAKRCNIDVQLGKYFLPDFPTPNGMGI-- 288

Query: 306  EEENELRNKAVAGLEVR----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              ++ LR+ +  GLE R    L +         Q Y  RL+FEL++I +M F GYFLIV 
Sbjct: 289  --DDYLRHASFEGLEERLEVLLPKDTPDYEAKKQVYIDRLNFELDIIIQMGFPGYFLIVM 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQWAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 347  DFIQWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVD 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV RA    Y   DRL K+IP 
Sbjct: 407  FCMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSYGLADRLSKMIPF 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +  +A   +   RE    D     + ++S KLEG+ R    HA G+VI    L+ 
Sbjct: 467  EVGMTLE-KAYEMEEPLREFLKNDEEAQEIWDMSLKLEGVVRGTGKHAGGVVIAPTKLTD 525

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRG 593
              P+  D      VTQF+   +E+AGL+KFDFLGL+TLT+++ +++ +        A   
Sbjct: 526  FSPIACDEEGGGLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWAMETIHRIQKRDGASDE 585

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              V++  IP DD +TY +L    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPG
Sbjct: 586  ELVNIDFIPLDDKKTYDMLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALFRPG 645

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V  + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ++ GY+
Sbjct: 646  PLQSGMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMGGYT 705

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L +AD+LRRAMGKK  EEM KQ+  FI G + NGI   +A NIF+L+ KFA YGFNKSH+
Sbjct: 706  LGQADMLRRAMGKKKPEEMAKQRGGFIEGCANNGIDAELAGNIFDLVEKFAGYGFNKSHS 765

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAY ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   ++I PP VN    
Sbjct: 766  AAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVILVEECRNMKLRIDPPDVNVSEF 825

Query: 827  DFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLES 884
             F V  D RI Y L A+KGVG      I+E  A+  PF  L DFC+RVD +++N+R LE+
Sbjct: 826  KFTVNDDGRIVYGLGAVKGVGEGPVEAIVECRAEGGPFKDLFDFCNRVDLRRINKRTLEA 885

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL S++   + A+   ++  + H ++F  
Sbjct: 886  LIRSGALDRLGPYYQDELKAYQASVDKNRAVLLASMEEAVQSAEQTARSAESGHMDLFGG 945

Query: 930  EKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                    +     K        R + E+  LG Y SGHP+D Y+  +R+   +   E  
Sbjct: 946  LFAEPEADVYANHRKARELPIKERLKGEKDTLGIYLSGHPIDEYEGEIRRFARQRIVELK 1005

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A M+V+ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1006 PARDTQ--TIAGMIVNLRVMKNKKGDKMGFITLDDRSGRIEASLF 1048


>gi|301049902|ref|ZP_07196828.1| DNA polymerase III subunit alpha [Escherichia coli MS 185-1]
 gi|300298355|gb|EFJ54740.1| DNA polymerase III subunit alpha [Escherichia coli MS 185-1]
          Length = 1144

 Score = 1095 bits (2831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1032 (40%), Positives = 608/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAANNIGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG     A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYAGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|54310069|ref|YP_131089.1| DNA polymerase III subunit alpha [Photobacterium profundum SS9]
 gi|46914508|emb|CAG21287.1| putative DNA polymerase III, alpha subunit [Photobacterium profundum
            SS9]
          Length = 1158

 Score = 1095 bits (2831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1044 (39%), Positives = 614/1044 (58%), Gaps = 38/1044 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL +HS +S+++G   ++ ++ K+A    PA+A+TD  NL   ++F   A  AG++
Sbjct: 4    PRFIHLHIHSDFSMVDGLSKVSPLVKKVAEIGMPAMALTDFTNLCGLVKFYFAAHGAGMK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +  ++              +  + +L +  +GYQ L  L+S+ YL    +  
Sbjct: 64   PIIGADFKVHSEE----------LENELADLTILATDNDGYQNLTMLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL + G +GLI+L+G   G + +A    +  +  + L  +K  F D  Y+ L R
Sbjct: 114  PVIDKEWLVQYG-KGLILLSG-RCGDVGKALLKGNQLLVNRCLEFYKTHFEDSFYLELVR 171

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D        V+LA   +LP+VATN+  FLS E ++AH++ +++     +   +RP+
Sbjct: 172  TGRPDEDAYIHFAVELAANEDLPVVATNDVRFLSAEQFDAHEIRVSIHDGYTIVDPNRPK 231

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL+   EM  +FSD+PEAL N+VEIA+RC+  +++    LP F   +       
Sbjct: 232  LYSPQQYLRTEEEMCELFSDIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGDL-----S 286

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 287  TEDFLVVKSREGLERRLAYLFPDEAVRVEKRPEYDERLEIELKVINQMGFPGYFLIVMEF 346

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL+F LLFERFLNP+R+SMPDFDIDFC
Sbjct: 347  IQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLKFDLLFERFLNPERVSMPDFDIDFC 406

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDRL K+IP +P
Sbjct: 407  MDKRDLVIDHVAEIYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKMIPAEP 466

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  +A  AD  V  L+++ + LEG+ R+A  HA G+VI    ++   
Sbjct: 467  GMTL-AKAFEAEPQLGDAYNADEEVKALIDMCRILEGVTRNAGKHAGGVVISPTTITDFS 525

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        +++
Sbjct: 526  PLYCDAEGANPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRREAEGKEPINI 585

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    +  +FQLES GM+  ++ +QPD  ED+IALV+L+RPGP+ + 
Sbjct: 586  ASIPMDDKKSFAMLQRSESTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSG 645

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E++        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 646  MVDNFIDRKHGREEVSYPDATWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGAD 705

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 706  MLRRAMGKKKPEEMAKQRTTFEQGAVNNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 765

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQT ++K HYP EF+AA MT +MDN +KI     +  +  I ++PP VN     F V 
Sbjct: 766  VSYQTLYLKAHYPAEFMAAVMTADMDNTDKIIGLVDECLRMKIPLLPPDVNKGLYRFNVD 825

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                I Y + A+KGVG     +++EA      F  L DFC+R+D+KK+N+RVLE L+ +G
Sbjct: 826  EQGAIVYGIGAVKGVGEGPIENLIEAREKGGHFKDLFDFCARIDTKKVNKRVLEKLIKSG 885

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A+D  G +R  L+ +L++  K A            ++F          +           
Sbjct: 886  AMDRLGPNRATLMATLNDAIKAAGQHHHAEAFGQADMFGVLTAAPEEVEQAYANIPEWPD 945

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             +  E E+  LG Y +GHP++ Y   L+       +++  T R     +A +V++ +   
Sbjct: 946  KIWLEGERETLGLYLTGHPINAYISELKHYTTWRLKDANPTGRDKVASVAGLVIAARVMT 1005

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G+RIG +T  + +   E   F
Sbjct: 1006 TKRGTRIGLMTLDDRSGRMEVMLF 1029


>gi|114562463|ref|YP_749976.1| DNA polymerase III subunit alpha [Shewanella frigidimarina NCIMB 400]
 gi|114333756|gb|ABI71138.1| DNA polymerase III, alpha subunit [Shewanella frigidimarina NCIMB
            400]
          Length = 1158

 Score = 1095 bits (2831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1045 (40%), Positives = 605/1045 (57%), Gaps = 36/1045 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+ +G   +  I+         AIA+TD NN    ++F      AG
Sbjct: 2    SDPRFVHLRVHSDYSMSDGVAKVKPIIAAAENQGMAAIALTDQNNFCGLVKFYGACNGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG    +          Q         ++ ++    EGYQ L +L+S  YL     
Sbjct: 62   IKPIIGADFWV----------QTPGFEKEFCALTIIAMNNEGYQNLTQLISEAYLRGHVD 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V I   WL +  + GLI+++G   G + +A    +    E  +  +++ F DR Y+ L
Sbjct: 112  NRVVIDQDWLVKYNS-GLIIISGAKDGDVGKALLKGNQNQVESLIAFYQQHFEDRYYLEL 170

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R  R ++       V+LA    LP+VATN  +FL ++D+EAH++ +A+     +    R
Sbjct: 171  IRTGRAHEERYLHMAVELASIKGLPVVATNQVVFLKQDDFEAHEIRVAIHDGFTLVDPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   YL+   EM+++F+D+P A++N+VEIA+RC+  ++++   LP F   +     
Sbjct: 231  PKTYSDQQYLRTEDEMIALFADIPSAIQNSVEIAKRCNVTIRLNEYFLPNFPTGDL---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L N +V GLE RL         +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287  -SIEDFLVNVSVKGLEERLEFLFPNPQVRAEKRGEYDERLEIELKVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  V+RL KLIP 
Sbjct: 406  FCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVERLTKLIPA 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A   +    EA   D  V  L+++ ++LEG+ R+A  HA G+VI    ++ 
Sbjct: 466  EPGMTL-AKAFEVEPALPEAYDGDEDVKELIDMCRRLEGVTRNAGKHAGGVVIAPTRITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R +      V
Sbjct: 525  FAPLYCDAEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPRLIKEGKDPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP  D   + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  SIEAIPLADPACFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   +  RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIERKHGREEVSYPDAEYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRGTFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     F 
Sbjct: 765  ALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFT 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V D+  I Y + AIKGVG      I+EA  + PF  L DFC+R+D KKLN+RV+E L+ A
Sbjct: 825  VDDDLNIVYGIGAIKGVGEGPVDSILEARKNGPFTDLFDFCARIDLKKLNKRVIEKLILA 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            GALD  G  R  ++ +L      A    K       ++F        D K      +   
Sbjct: 885  GALDTLGPHRASMMATLPQAISAAAQHAKAEATGQNDMFGLLNSEPEDSKQNFVHCTPWP 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +  E E+  LG Y +GHP++ Y   L++      ++   T RG  ++ A +VV+ +  
Sbjct: 945  DKIWLEGERETLGLYLTGHPINQYLKELKQYTNGRLKDIHPTERGKTVKAAGLVVATRVM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GS++G VT  + +   E   F
Sbjct: 1005 ITKRGSKMGLVTLDDKSARLEVMLF 1029


>gi|149192145|ref|ZP_01870366.1| DNA polymerase III subunit alpha [Vibrio shilonii AK1]
 gi|148834015|gb|EDL51031.1| DNA polymerase III subunit alpha [Vibrio shilonii AK1]
          Length = 1159

 Score = 1094 bits (2830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1046 (39%), Positives = 612/1046 (58%), Gaps = 37/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A ++G
Sbjct: 2    SDPKFIHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPAMALTDFTNLCGLVKFYGNAHSSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P+IG               Q       +  I +L +   GY  L  L+S+ YL    +
Sbjct: 62   VKPLIGA----------DFAVQSDEFGDELTRITVLAADNTGYNNLTLLISKAYLRGHIQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL E+ +EGLI+L+G   G + +A    ++ +A++    ++  F DR Y+ L
Sbjct: 112  HQPVIDKAWLVEL-SEGLIVLSGAKEGDVGKALLKGNTTLAKQCAQFYQTHFPDRYYLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA   +LP+VATN  +F+ +E ++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHFAVELAEELDLPVVATNEVVFVDKELFDAHEIRVAIHDGYTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   YL++  +M  +F+D+PEAL+N+VEIA+RC+  +++    LP F  +      
Sbjct: 231  PKKYSAQQYLRSEEDMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPAFPTE-----G 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             +E + L  K+  GLE RL         +     +Y  RL  EL+VI +M F GYFLIV 
Sbjct: 286  MKETDFLVMKSREGLEERLEFLFPDEAVRAERRPEYDDRLQIELDVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KLIP 
Sbjct: 406  FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPA 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   +    +    D  V  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTLE-KAFKAEPALPQLYDGDEEVRDLIDMCRILEGCTRNAGKHAGGVVISPTTITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FAPIYADSEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585  RIESIPLDDSASFQLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E +        H  +   L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 645  SGMVDNFIDRKHGREAVSYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAVFEEGAINNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N     F 
Sbjct: 765  ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLFRFN 824

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  +  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L+ 
Sbjct: 825  VNEEGAIVYGIGAIKGVGEGPIDVIIEARNKGGHFRDLFDFCARIDIKKVNKRVIEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946
            +GALD  G  R  ++ SL++  K A    +       ++F        D +    +    
Sbjct: 885  SGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQADMFGVLTDAPEDVEHKYTQVPPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ + 
Sbjct: 945  PEKVWLEGERETLGLYLTGHPINAYLKELTKYTSCRLKDATPTRRDQSLTVAGLVIAARV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T++G+RIG +T  + +   E   F
Sbjct: 1005 MTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|301155192|emb|CBW14656.1| DNA polymerase III alpha subunit [Haemophilus parainfluenzae T3T1]
          Length = 1159

 Score = 1094 bits (2830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1048 (40%), Positives = 615/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++G + +  ++   AA+   A+A+TD  N    + F  +  +
Sbjct: 1    MSTQPRFVHLRTHTDFSMIDGIVKVKPLVKACAANNMVALALTDFTNFCGVVRFYGETLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PIIG  + +          + +     + ++ LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGIKPIIGADVHV----------KSELCGEELFTLTLLAKNNEGYKNITLLLSKAYQRGY 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   EG+I+L+GG+ G I +     +S  AE  +  +++ F D  Y+
Sbjct: 111  V-DLPYIDQEWLIE-HREGVIVLSGGTQGDIAKKLLKENSFEAESAVSFYQEFFPDHFYL 168

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +L R    D  R  Q  ++LA  H+LPLVATN+ +FL+ +D+EAH++ +A+     +   
Sbjct: 169  SLSRTGRPDEERYIQAALKLAEAHDLPLVATNDVVFLAPDDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP R T   Y ++  EM  +FSD+P ALENTV IA+RC+  L++    LP+F   +   
Sbjct: 229  KRPKRYTEQQYFRSEEEMCDLFSDIPSALENTVLIAQRCNVTLRLGEYFLPKFPTGDL-- 286

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 287  ---STEDYLVMKSKEGLEERLAFLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ K+I
Sbjct: 404  VDFCMDGRDRVIDHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLQTAYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLTREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  LVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINVGKHH 822

Query: 828  FKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +N    Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNENGEIVYGIGAIKGVGEGPIDALITARNEGGIFRDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  K +    K+      ++F     T  + +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALKASDQHAKDEAMGQTDMFGVLTETHEEVENAYAHTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A ++VS 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYSSTRLKDLTPNRRGQISTVAGLLVST 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+RIG  T  + +   +   F
Sbjct: 1003 RFATTKKGNRIGIATIDDRSGRLDLTLF 1030


>gi|325576846|ref|ZP_08147461.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus
            parainfluenzae ATCC 33392]
 gi|325161052|gb|EGC73170.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus
            parainfluenzae ATCC 33392]
          Length = 1159

 Score = 1094 bits (2830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1048 (40%), Positives = 613/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++G   +  ++   AAD   A+A+TD  N    + F  +  +
Sbjct: 1    MSAKPRFVHLRTHTDFSMIDGIAKVKPLVKACAADNMVALALTDFTNFCGVVRFYGETLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PIIG  + +          +       + ++ LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGIKPIIGADVHV----------KSDLCGEELFTLTLLAKNNEGYKNITLLLSKAYQRGY 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   EG+I+L+GG+ G I +     +S  AE  +  +++ F D  Y+
Sbjct: 111  V-DLPYIDREWLIE-HREGVIILSGGTQGDIAKKLLKENSSEAESAVSFYQEFFSDHFYL 168

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +L R    D  R  Q  ++LA  H+LPLVATN+ +FL+ +D+EAH++ +A+     +   
Sbjct: 169  SLSRTGRPDEERYIQAALKLAEEHDLPLVATNDVVFLAPDDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP R T   Y ++  EM  +F+D+P ALENTV IA+RC+  L++    LP+F   E   
Sbjct: 229  KRPKRYTEQQYFRSEEEMCDLFADIPSALENTVLIAQRCNVTLRLGQYFLPQFPTGEL-- 286

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  KA  GLE RLA        +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 287  ---STEDYLVMKAKEGLEERLAFLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V + YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ K+I
Sbjct: 404  VDFCMDGRDRVIDHVADTYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLD-KAFEAEPQLQVAYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLAREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINVGKHH 822

Query: 828  FKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +N    Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNENGEIVYGIGAIKGVGEGPIDALITARNEGGIFRDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  K +    K+      ++F     T  + +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALKASDQHAKDEAMGQADMFGVLTETHEEVENAYAHTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG     A ++VS 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYSSTRLKDLTPNRRGQISTAAGLLVST 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+RIG  T  + +   +   F
Sbjct: 1003 RFATTKKGNRIGIATIDDRSGRLDLTLF 1030


>gi|304312463|ref|YP_003812061.1| DNA polymerase III alpha subunit [gamma proteobacterium HdN1]
 gi|301798196|emb|CBL46418.1| DNA polymerase III alpha subunit [gamma proteobacterium HdN1]
          Length = 1173

 Score = 1094 bits (2830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1043 (40%), Positives = 600/1043 (57%), Gaps = 32/1043 (3%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P+FVHL++H+ YSL++G + +  +++K A    PA+A+TD + L+  ++F +    A
Sbjct: 17   TSAPTFVHLRLHTEYSLVDGLVRVKKLVEKAAELGMPAVAVTDYSGLYGLVKFQKYGLPA 76

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G++PI G  + +   D             +   I LL    +GY+ + +LVS  +L  Q 
Sbjct: 77   GVKPIYGADIWLANLD----------VEGSPSLITLLAMDVQGYRNITKLVSEAFLTGQR 126

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 +    L +    G+I L+GG  G + +A        AE+       L+ DR Y+ 
Sbjct: 127  NGKAIVSRELLHQFAD-GIICLSGGRQGELGQALLQERPDRAEQIAREMAALYPDRFYLE 185

Query: 186  LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +QR  R  D       V LA    LP+VATN+  FL   DYEAH+V + +     +    
Sbjct: 186  VQRTERAGDETYLHLAVALADRFALPVVATNDVRFLKRSDYEAHEVRVCINAGWTLDDPR 245

Query: 245  R-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R    +   YLK+  EMV++F+DLPEALENTVEIA+RC+  + +    LP +   E   I
Sbjct: 246  REMNYSDQQYLKSPQEMVALFADLPEALENTVEIAKRCNVEIPLGTYFLPDYPVPEGMTI 305

Query: 304  QKEEENELRNKAVAGLEVRLAQGA----IAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                ++ L ++A  GL  RLA                Y +RL  EL+ I +M F GYFLI
Sbjct: 306  ----DSYLVHQAEEGLNARLAFLYDITRPDFAEIRARYDERLRIELDCIIKMGFPGYFLI 361

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFIQWAK N +PVGPGRGSGAGS+ AYA+ ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 362  VADFIQWAKNNGVPVGPGRGSGAGSLVAYAIKITDLDPLEYDLLFERFLNPERISMPDFD 421

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC + RD VI YV  KYG + V+QIITFGS+ AKA +RDVGR     Y  VDR+ KLI
Sbjct: 422  VDFCMEGRDRVIDYVAEKYGRDAVSQIITFGSMAAKAVVRDVGRVQGKSYGFVDRIAKLI 481

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +    +  +A+  + + +E   AD  V  LL+++ KLEG+ R    HA G+VI    L
Sbjct: 482  PFELGMTLE-KAMEQEPQLKELYNADEEVHDLLDMALKLEGICRGVGKHAGGVVIAPSAL 540

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +  VP+Y D      VTQ++   +E+AGL+KFDFLGL+TLT++  +L  +  R  +    
Sbjct: 541  TNYVPLYCDETGHNLVTQYDKDDVEQAGLVKFDFLGLRTLTIIDWALGIINPRLQRKGEA 600

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ I  DD  T+ LL +  T  +FQLES GM+  ++ ++P   EDIIALV+L+RPGP
Sbjct: 601  AVDIARIRLDDPATFRLLQSAETTAVFQLESRGMKDLIKRLKPSVFEDIIALVALFRPGP 660

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            + + +V  +  RK+GK+ +   HP + P+L  T G I+YQEQVM I Q+L+GYSL  AD+
Sbjct: 661  LGSGMVDDFIARKHGKQAVTYPHPDLKPVLDTTYGTILYQEQVMLIPQVLAGYSLGGADI 720

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  +EM KQ+  F  G +KN I + +A  IF+ + +FA YGFNKSH+AAYA++
Sbjct: 721  LRRAMGKKKADEMAKQRSIFTDGCAKNQIDEKLAGEIFDTMEEFAKYGFNKSHSAAYALV 780

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQTAW+K HYP  F++A ++ +M N +KI  F  + R+  +QI+ P VNT    F V D
Sbjct: 781  SYQTAWLKAHYPAGFMSAVLSADMHNTDKIVIFIDECRRMGLQIVSPHVNTSAYKFDVND 840

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             N I Y L AIKG+G      I+EA  A  PF  L +FC RVD KKLNRRVLE+L+ +GA
Sbjct: 841  ANHIVYGLGAIKGLGAGPIEAIIEARDAGAPFTDLFEFCRRVDMKKLNRRVLEALIRSGA 900

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            +D  G  R  +L SLD   K A    ++      ++F    G              +   
Sbjct: 901  MDGMGPDRAIMLASLDEAAKAAGQAAESADAGMMDLFGELGGAEEFTPAWSVAKPASPDE 960

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGNNIRLAAMVVSKQQKKT 1009
              + E+  LG Y +GHP+D ++  L         +      R     +A +V++ +  K 
Sbjct: 961  LLQGEKDTLGLYLTGHPIDQFEEELSHFISSKICDVKPSQSRDQKSIIAGLVIAVRTMKN 1020

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
            ++G R+G++T  + +   E + F
Sbjct: 1021 KRGDRMGFLTLDDKSGRMEVSLF 1043


>gi|114567554|ref|YP_754708.1| DNA polymerase III DnaE [Syntrophomonas wolfei subsp. wolfei str.
            Goettingen]
 gi|114338489|gb|ABI69337.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei str.
            Goettingen]
          Length = 1130

 Score = 1094 bits (2829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1030 (39%), Positives = 623/1030 (60%), Gaps = 25/1030 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  HS YSLL+GA  + +++++    + PA+AITD   L+  ++F ++A   GI+P
Sbjct: 4    SFVHLHNHSEYSLLDGACRIKDLVNRAVELEMPAVAITDHGVLYGVIDFYREARKRGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC+L +  +  L    +       +  + LL     GY+ L++LVSR +L        
Sbjct: 64   LIGCELYVAPRSRLDKEARI---DDNLYHLTLLCKNELGYRNLVQLVSRAFLEG-FYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L++   EGLI L+G   G I R       + A ++ L +++LF     Y+ LQ 
Sbjct: 120  RVDQELLEKYH-EGLIALSGCVVGEIPRLLQNGDYRGAREKALYYQELFGSGNFYLELQD 178

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +       +++L+    +PL A+N+  +L ++D + HDVL+ +   +VV+ + R R
Sbjct: 179  HGLQEEKASLPGLLRLSREDSIPLAASNDCHYLRKKDAQVHDVLLCIQTGSVVNDEKRLR 238

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +  + Y+K+R EM ++F D PEALENT++IA  C+         LP F           
Sbjct: 239  FSGSEFYMKSREEMAALFPDYPEALENTLKIAGECNLDFTFGEYHLPVFELPPG----HS 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+ L          +            +   +RL++EL VI  M F+ YFLIV D + W
Sbjct: 295  AESFLSEMVHEKFRRKYPDA-------QEKIIERLEYELRVINEMGFAAYFLIVQDLVNW 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++N IPVGPGRGS AGS+ +Y L IT IDPLR+ LLFERFLNP+R+SMPD DIDFC ++
Sbjct: 348  SRQNGIPVGPGRGSAAGSLVSYVLDITTIDPLRYDLLFERFLNPERVSMPDIDIDFCFEK 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD VI Y+ +KYG +RVAQIITFG++ A+AA+RDVGRAL +PY QVDR+ K++P +    
Sbjct: 408  RDRVIDYIISKYGADRVAQIITFGTMAARAAIRDVGRALDVPYGQVDRIAKMVPAELGVS 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+        A  +D +   +L+I+Q +EG+ RHAS HAAG+VIG + LS+++P+ 
Sbjct: 468  LE-RALEISPDLFTAYQSDYNTRNILDIAQAIEGMPRHASIHAAGVVIGRQSLSEILPLQ 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            +       +TQF  + +E  GL+K D LGL+TLT++ ++L+ + + R   +D+S IP DD
Sbjct: 527  KTP-EGHVLTQFTKETVEDIGLLKMDILGLRTLTVIDRALEIIRKTRDEDIDISSIPLDD 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
               Y LL+   T G+FQLES G+R+ L  M+PD  EDIIA+++LYRPGP+ + +V  + N
Sbjct: 586  EAVYKLLSAGDTAGVFQLESDGLRRLLCEMKPDRFEDIIAVIALYRPGPLGSGMVEDFIN 645

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RKNG+++I  I PL++ +LKET GVI+YQEQVM++A  L+ +++ EADVLRRAMGKK  E
Sbjct: 646  RKNGRQEIEYIDPLLEDILKETYGVILYQEQVMRVASELADFTMGEADVLRRAMGKKKAE 705

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            E+  Q+++FI+GA++NGI    A ++F+L+  FA YGFNKSH+AAYA+ISYQTA++K HY
Sbjct: 706  ELMAQRDKFIAGAARNGIGLATASHLFDLMESFAGYGFNKSHSAAYALISYQTAYLKAHY 765

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVE+L A ++  +DN +K+  + ++ R+  I+++PP +N    +F V  + I + L AIK
Sbjct: 766  PVEYLCAFLSSVIDNQDKVVSYIKECRRLGIKVLPPDINESYENFSVARDAIRFGLGAIK 825

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
             VG    ++I+EA     + SL DFC RVD  +LN+R+LE+L+ AG  D  G+SR   L 
Sbjct: 826  NVGQNAVKNIVEARKQGFYTSLFDFCRRVDLGQLNKRMLENLILAGCFDSLGFSRKGALS 885

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             ++     +  +++N  ++  ++F  E     + I ++      S  R   E+ VLGF+ 
Sbjct: 886  IMEECVNISLAIKQNECSQQGSLFGDEMEMVEEPI-IKLKGEYESRERLLKEKEVLGFFV 944

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S  PLD ++ +L  +     E+       + +R+A +VV+  ++ +RKG         + 
Sbjct: 945  SESPLDEFRSLLPLISTHCLEDINLWEEESYVRVAGIVVNLSRRVSRKGESYARFVLEDL 1004

Query: 1024 AKEYEANFFP 1033
                E   FP
Sbjct: 1005 GGRIEVLVFP 1014


>gi|312793441|ref|YP_004026364.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kristjanssonii
            177R1B]
 gi|312180581|gb|ADQ40751.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
            kristjanssonii 177R1B]
          Length = 1140

 Score = 1093 bits (2827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1033 (37%), Positives = 602/1033 (58%), Gaps = 30/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA  ++ + +++      A+AITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGVMYGVIDFYKAAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +               +  +VLL    EGY+ L ++VS  ++        
Sbjct: 62   IIGCEVYLAPRTRFDKEPNIDND---IHHLVLLAMDNEGYKNLSKIVSIGFVEG-FYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L +  ++GL+ LT   +G I +       +     +  +K++FG+  Y  LQ H
Sbjct: 118  RVDREVLSKY-SKGLVALTSCLAGEIPKLILREQKEKLYDAISFYKEVFGENFYFELQYH 176

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +  +++++L+  +++PLVATN+  +L  ED   HD+L+ +     +S  +R   
Sbjct: 177  YIDEQRFVNNELMRLSKKYQIPLVATNDVHYLRREDRNLHDILLCIQTGKTISDSNRMEF 236

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  IF  +PEAL+NT+EIA +C+   +     LP+F   E    + + 
Sbjct: 237  PTDEFYLKSPEEMQQIFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEG---KSDA 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+  A+ G + R ++   A          RL  EL VI  M F  YFLIV DFI +A
Sbjct: 294  FEYLKELALEGFKKRYSKDDKAAY-------DRLMMELQVIKDMGFVEYFLIVRDFINYA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDFC  RR
Sbjct: 347  KQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFCYQRR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP  P   +
Sbjct: 407  QEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGIPYSQVDEIAKMIPFSPGMTI 466

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   ++    + +V ++++ ++ LEG+ RHAS HAAG+VI   P++ LVP+ R
Sbjct: 467  D-KALEINHELKKIYEQNDTVRKIIDTARNLEGMPRHASVHAAGVVISSCPITDLVPLAR 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL  I ++D 
Sbjct: 526  --TDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDRIDYNDK 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y  ++   T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I VY   KN
Sbjct: 584  NVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +EKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM KK  + + 
Sbjct: 644  NREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKKKADILM 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            ++K+RFI GA  NG+ K  A  IF ++  FA Y FNKSHAAAYA+++YQTA++K +Y +E
Sbjct: 704  EEKDRFIEGAMANGVEKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKKYYTIE 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ + +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + L AIK +G
Sbjct: 764  FMTSLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823

Query: 847  TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 HI++       F  L DF  RVD+  +N+R++E+L+ +GA D  G +R  LL S+
Sbjct: 824  ENVIAHILKEREVKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGINRNSLLASV 883

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            ++I        K +     + F    G  ++    +      +    + E+  +G Y S 
Sbjct: 884  EDIL--VLKQAKKKNANQFSFF-EISGNENESFEYKNMPQPTAQELMKMEKDTIGIYISS 940

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRG-----NNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            HPL+ Y   + K  +    E              I +  ++   + K T+    + +   
Sbjct: 941  HPLERYTEEISKYNVTPLSEISTMSEEDEYKFEQILVCGILKEVKVKLTKNNQTMAFAKL 1000

Query: 1021 SEPAKEYEANFFP 1033
             +     E  FFP
Sbjct: 1001 EDLTDSVEVLFFP 1013


>gi|330445160|ref|ZP_08308812.1| DNA polymerase III, &alpha subunit [Photobacterium leiognathi subsp.
            mandapamensis svers.1.1.]
 gi|328489351|dbj|GAA03309.1| DNA polymerase III, &alpha subunit [Photobacterium leiognathi subsp.
            mandapamensis svers.1.1.]
          Length = 1159

 Score = 1093 bits (2827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1044 (39%), Positives = 614/1044 (58%), Gaps = 37/1044 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +  I+ K +    PA+AITD  NL   ++F   A  AG++
Sbjct: 4    PRFIHLRVHSDFSMIDGLAKVKPIVKKASDLGMPALAITDFTNLCGLVKFYFAAHDAGMK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG               Q       +  + +L +  EGY+ L  L+S  Y     +  
Sbjct: 64   PIIGA----------DFKVQSAEMGDELFELTILAANNEGYKNLTLLISEAYQRGHVQHL 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL     EGLI+L+GG +G + +A    + ++ +  +  +K  F D  Y+ L R
Sbjct: 114  PVIDKEWLIN-HREGLIVLSGGKNGDVGKALLKGNQKMVDSFISFYKTHFPDSYYLELVR 172

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  +       V+LA   +LP+VATN+   L+ + ++AH++ +A+     +   +RP+
Sbjct: 173  TGRADEEAYLHFAVELAEKEDLPVVATNDVRLLTADQFDAHEIRVAIHDGYTLVDPNRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   YL++  EM  +F+D+PEAL+N+VEIA+RC+  +++    LP F   +       
Sbjct: 233  LYSAQQYLRSEEEMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGDM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD EL V+ +M F GYFLIV +F
Sbjct: 288  IEDFLVMKSKEGLEERLEFLFPDPEVRAARRPEYDERLDVELQVVNQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFDIDFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDIDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P +P
Sbjct: 408  MDKRDLVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPAEP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  ++  AD  V  L+++ + LEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAFEAEPQLGQSYDADEEVRDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R ++      ++
Sbjct: 527  PLYCDAEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLIEQGKEPVNI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + I  DD +++ +L    +  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIAMDDPKSFAMLQRSESTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E +        H  +  +L  T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRAVFEEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +KI     +  + N++++PP VN     F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKIISLVDECHRMNLKLLPPDVNKGLYRFNVD 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   + Y + A+KGVG     +I+ A      F  L DFC+R+D+KK+N+RVLE L+ +G
Sbjct: 827  DEGAVVYGIGAVKGVGEGPIENIISAREKGGHFKDLFDFCARIDTKKVNKRVLEKLIKSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A+D  G +R  +L +LD+  K A    +       ++F          +           
Sbjct: 887  AMDRLGPNRAAMLATLDDAIKAASQHHQAEAFGQTDMFGVLTAAPEEVEHKYANIPESPD 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             V  E E+  LG Y +GHP++ Y P L+       +++  T R     +A +V++ +   
Sbjct: 947  KVWLEGERETLGLYLTGHPINAYIPELKHYTTWRLKDAQQTGRDKVATVAGLVIAARVMT 1006

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G+RIG +T  + +   E   F
Sbjct: 1007 TKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|124514840|gb|EAY56352.1| DNA polymerase III, alpha subunit [Leptospirillum rubarum]
          Length = 1201

 Score = 1093 bits (2827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1045 (39%), Positives = 609/1045 (58%), Gaps = 21/1045 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL VH+ YSLL+GA  ++ ++ K  A+  PAIA+TD  NLF A+EF Q A  
Sbjct: 1    MSSTDQFVHLHVHTQYSLLDGANKIDPLIRKARAENMPAIAMTDHGNLFGAIEFFQTAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKM---------TNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
             G++PIIGC++ I  +               +Q K        ++LL     GY+ L+++
Sbjct: 61   HGVKPIIGCEVYITPRSRFDRQDLYFGGDGPHQAKKINNASFHLILLAENDTGYRNLLKI 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L        RI L  L     EGLI L+G   G I        +  A      F+
Sbjct: 121  VSLSHLEG-FYYRPRIDLELLSR-HHEGLIALSGCLKGQISYMLTRGDTDRAYATAGLFR 178

Query: 176  KLF-GDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++F  +  +  +Q +   D+     +++ L+    +PLVATN+  +L  ED   HD+L+ 
Sbjct: 179  EIFGPENYFFEVQANGLEDQRIANREIIGLSKKLSIPLVATNDCHYLEREDSVPHDILLC 238

Query: 234  VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +     +    R R   D  YLK   EMV  F +LPEA+ENT+ IA R    + +    +
Sbjct: 239  LQTGKTLEDPARLRFGSDEFYLKTPREMVRSFEELPEAIENTLRIADRIDVSIDLQTTHM 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P +   E               +  GL+ R  +   +    A  Y +RL+ E+ VI +M 
Sbjct: 299  PSYRLDENQGQTTTVPELFVRTSREGLDARFQENTFSDTEKA-LYLERLEREIQVIQKMG 357

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            + GYFLIV DFI+ A++  IPVGPGRGS AGSV A++L IT+IDP+RF LLFERFLNP+R
Sbjct: 358  YEGYFLIVWDFIRKAREMGIPVGPGRGSAAGSVVAWSLRITNIDPIRFGLLFERFLNPER 417

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +S+PD D+DFC +RR EVI+YV ++YG +RVA I TFG++ AK ++RDVGR L M Y++V
Sbjct: 418  VSLPDIDVDFCMNRRGEVIQYVVDRYGMDRVAMIATFGTMGAKGSIRDVGRVLGMTYAEV 477

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            DR+ K+IPN     +  +A+ ++   R     DP ++ L  +S+KLEG+ RH+S HAAG+
Sbjct: 478  DRVAKMIPNSLDMTLE-KALEENPDLRALLEKDPRMEELFSLSRKLEGITRHSSIHAAGV 536

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI   PL + VP+ R    +  VTQF    +EK GL+KFDFLGL TLTL+Q + + +   
Sbjct: 537  VISREPLLEHVPLMRGANGE-IVTQFTKDDVEKVGLVKFDFLGLTTLTLIQGAENRIQAH 595

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                    IP DD  TY LL+   TLGIFQLES GM   +  MQP+  ED+IAL++LYRP
Sbjct: 596  TPDFSADRIPLDDARTYRLLSEGKTLGIFQLESRGMTDLIMKMQPETFEDLIALLALYRP 655

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GPI++ +V  +  RK    +I    P ++P+L+ET GVI+YQEQVMQIA +L+G+SL EA
Sbjct: 656  GPINSGMVDDFIKRKKNPREIRYELPELEPVLRETYGVIVYQEQVMQIANVLAGFSLGEA 715

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM K +++F+ GA + G  K  A ++FEL+A FA YGFNKSH+AAYA
Sbjct: 716  DLLRRAMGKKKPEEMAKMQDKFVDGAIRKGFPKEKATHVFELMAYFAGYGFNKSHSAAYA 775

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +ISYQTA++K HYP+E  AA +T  +D+ EKI  F   A+   I+++ P +N    DF +
Sbjct: 776  LISYQTAYLKAHYPLELWAALLTNALDDTEKIGVFLAGAKDMGIEVLAPDINQSEFDFAI 835

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                RI + L A+K VG      I+EA A+  PF    DF  R+  KK+NRRV+E+L+ A
Sbjct: 836  LPGSRILFGLGAVKNVGKQAVDCILEARANDGPFVDFPDFLKRIVGKKVNRRVIEALIRA 895

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA    G  R   ++SLD++  +A+  +  + +  +++F+ ++G  S    L +    + 
Sbjct: 896  GAFRSLGIRRSVAMESLDDLLAWAEKQKSGKGSLQKSLFSEDQGGRSSGPPLREVPEWDE 955

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             +    E+  LGFY + HP+  Y  +L K+  +      +   G  +R+ A+V + ++ K
Sbjct: 956  RMLLREEKNALGFYLTSHPMARYADLLLKLDTRSTRSLESVSEGETVRVFAVVSALREVK 1015

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T+KG ++  +T  +     EA  FP
Sbjct: 1016 TKKGDKMAQLTLLDMEGTIEAVLFP 1040


>gi|85859457|ref|YP_461659.1| DNA polymerase III subunit alpha [Syntrophus aciditrophicus SB]
 gi|85722548|gb|ABC77491.1| DNA polymerase III alpha subunit [Syntrophus aciditrophicus SB]
          Length = 1155

 Score = 1093 bits (2827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1036 (40%), Positives = 622/1036 (60%), Gaps = 22/1036 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL VH+ YSLL+G + + +++ K       A+A+TD  N+F  ++F Q AC  GI+P
Sbjct: 5    TFVHLHVHTQYSLLDGTIRIKDLISKAKEFGMQAVAMTDHGNMFGTIDFYQAACKEGIKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +  +   + T  G +   T   +++L    +GYQ L++L S  YL D      
Sbjct: 65   IIGCELYVAPKTRFEKT--GGSIGDTARHLLVLAKDYQGYQNLMKLSSLGYL-DGFYYRP 121

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L++   +GLI L+   +G I      +  + A      ++++FG+   Y+ +  
Sbjct: 122  RVDKELLKKYH-KGLIALSACLNGEIANYILKDKFKDALLAAENYRQIFGEHNFYLEIME 180

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++      +++++    +P+ ATN+  +L+ ED E+H+VL+ +     +   DR R
Sbjct: 181  NGLPEQKTANEGLLEISRQLSIPVAATNDCHYLNREDAESHEVLLCIQTGKTLDDSDRMR 240

Query: 248  VTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + D  Y ++  +M  +F+  PEA+ENT EIA RC+   +     LP+F     + +   
Sbjct: 241  FSTDAFYFRSPDDMKQLFNYCPEAVENTKEIADRCNLSFEFGKFYLPKFEVSSDETL--- 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQ-DYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E+ L   A+ GL  R+      +G   +  Y +RL  EL +I  M F+GYFLIV+DF+ 
Sbjct: 298  -EDRLEKVAIQGLAERMPPIVDERGEEVRGIYEKRLADELKIIKSMGFAGYFLIVSDFVS 356

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK+ NIPVGPGRGS AGS+ AYALTITDIDP+R+ L FERFLNPDR+SMPD DIDFC +
Sbjct: 357  YAKRMNIPVGPGRGSAAGSLVAYALTITDIDPIRYDLFFERFLNPDRISMPDIDIDFCPE 416

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             R ++IRYV  KYG ++V+QIITFG +QA+A +RDVGRAL +PY +VD + KL+PN    
Sbjct: 417  GRGDIIRYVTEKYGEDKVSQIITFGKMQARAVIRDVGRALNIPYGEVDSIAKLVPNILNI 476

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +   A+  + R +EA   D  + +LL++S+ LEGL RHAS HAAG+VI D PL + VP+
Sbjct: 477  SLD-DAMEMEPRLQEAAKRDEKIRKLLKLSKSLEGLNRHASVHAAGVVISDVPLVERVPL 535

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
            Y+  + D+  TQF+M  +   GL KFDFLGLKTLT+++ +L F+ +  G  +DL  +P +
Sbjct: 536  YKSPKDDV-TTQFSMNDLSTVGLTKFDFLGLKTLTVIKNALSFIKEGLGTDLDLKNLPLN 594

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL+   T G+FQLES GM++ L  M+PDCIED+IAL++LYRPGP++ I  +  R
Sbjct: 595  DADTFKLLSKGETDGVFQLESDGMKEILVRMKPDCIEDLIALIALYRPGPMNMIPEFIAR 654

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K GK  I+     ++ +LKET GVI+YQEQVMQIA +++ YS+SEAD LR+ MGKK   +
Sbjct: 655  KQGKTPIIYEIDQLEGILKETYGVILYQEQVMQIASVIAQYSMSEADTLRKVMGKKDTAK 714

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M+ ++ +F+ GA  NGI +     I+E +  FA YGFNKSH+ AYA+++YQTA++K HYP
Sbjct: 715  METERPKFMEGAKANGIPEQKTRKIWEQMETFASYGFNKSHSTAYAMVTYQTAYLKAHYP 774

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEF+AA +T E DN +KI K+    ++  I I+PP +N    DF V  NRI + LAAIK 
Sbjct: 775  VEFMAALLTSEKDNRDKIIKYIHVCKEMGIAILPPDINESQRDFSVAGNRIRFGLAAIKN 834

Query: 845  VGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG       I        F S EDFC+R D KK+N+RVLESL+  GA D  G  R QL+ 
Sbjct: 835  VGLGAIDAMISSRQKGGEFLSFEDFCNRTDLKKVNKRVLESLIKCGAFDSTGQRRRQLMS 894

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK------ITLEKFSVENSSVRFENEQR 957
              +NI + +Q  +K++ +K  + F   +    ++       +  +    +      +E+ 
Sbjct: 895  EYENIIEISQKRQKDKASKQASFFDDMEDLGVEEKRSYANSSAAEIQEWDPKELLAHEKE 954

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             LGFY +GHPL+ Y   +  +        +       + LA +V   ++  TRK   + +
Sbjct: 955  FLGFYVTGHPLEGYASKISMVANTDSAGILEKGDKEPVSLAGIVSGIREVFTRKKEIMAY 1014

Query: 1018 VTFSEPAKEYEANFFP 1033
            V+  +     +  FFP
Sbjct: 1015 VSLEDLKGATDVIFFP 1030


>gi|127513548|ref|YP_001094745.1| DNA polymerase III subunit alpha [Shewanella loihica PV-4]
 gi|126638843|gb|ABO24486.1| DNA polymerase III, alpha subunit [Shewanella loihica PV-4]
          Length = 1157

 Score = 1093 bits (2826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1045 (40%), Positives = 606/1045 (57%), Gaps = 36/1045 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G   +  IL K + DQ  A+A+TD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDFSMSDGLAKVKPILAKASEDQMAALALTDNTNLCGLVKFYGGCHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+GC   + +                  S+ +L    EGY+ L  L+S  YL    K
Sbjct: 62   IKPIVGCDFFMLVPG----------FEDEFCSLTVLAMNNEGYKNLTLLISDAYLRGHVK 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL+   +EGLI+L+G   G + +A    +    +  +  ++  F DR Y+ L
Sbjct: 112  DRAVIDQAWLERY-SEGLILLSGAKDGDVGKALLKGNQGQVDSLVAFYQTHFPDRYYLEL 170

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R     V+LA   +LP+VATN  +F+  E +EAH++ +A++    ++   R
Sbjct: 171  IRTGRPDEERYLHMAVELAGEKDLPVVATNQVVFIQPEQFEAHEIRVAISDGFTLADPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +   Y + + EM  +F D+PEAL+N+VEIA+RC+  +++    LP F   +     
Sbjct: 231  PRRYSEQQYFRIQDEMCELFDDIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGDL---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L   +  GLE RL         +     +Y +RLD EL VI  M F GYFLIV 
Sbjct: 287  -SIEDFLVEVSKKGLEERLEFLFPDEAQRAERRGEYDERLDVELTVINNMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW K N IP+GPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWGKDNGIPIGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ K+IP 
Sbjct: 406  FCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKMIPA 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A   +    EA  AD  V  L+++ + LEG+ R+A  HA G+VI    ++ 
Sbjct: 466  EPGMTL-AKAFEAEPALPEAYDADEEVKDLIDMCRVLEGVTRNAGKHAGGVVIAPTVITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +      Q    V
Sbjct: 525  FAPLYCDAEGHNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPHLAKQGKEPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  I  DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  RIEAIVLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   +  RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 645  SGMVDNFIERKHGREEVSYPDQQWQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     F 
Sbjct: 765  ALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLLPPDVNKGLFRFT 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V D+  I Y + AIKGVG      I++A  D PF  L DFC+RVD KKLNRRV+E L+ A
Sbjct: 825  VDDDLNIVYGIGAIKGVGEGPVESILKAREDGPFIDLFDFCARVDLKKLNRRVIEKLICA 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            GALD  G  R  ++ +L    + A    K       ++F        D K      +   
Sbjct: 885  GALDNLGPHRAAMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDNKQQFVHCTPWP 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              V  E E+  LG Y +GHP++ Y   L+       ++   T RG   + A +VV+ +  
Sbjct: 945  DKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTTKAAGLVVATRVM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GS++G VT  + +   E   F
Sbjct: 1005 MTKRGSKMGLVTLDDKSARLEVMLF 1029


>gi|321222185|gb|EFX47257.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica
            serovar Typhimurium str. TN061786]
          Length = 1144

 Score = 1093 bits (2826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1032 (40%), Positives = 605/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K A+   PA+AITD  NL   ++F      AGI+PI+G   ++  + 
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNE- 59

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                          +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 60   ---------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEALENTVEIA+RC+  +++    LP+F   +        E+ L  KA  GL
Sbjct: 230  MCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDYLVKKAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D     Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I++A      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG     A +V++ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|86608659|ref|YP_477421.1| DNA polymerase III subunit alpha [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557201|gb|ABD02158.1| DNA polymerase III, alpha subunit [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 1165

 Score = 1092 bits (2825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1049 (36%), Positives = 606/1049 (57%), Gaps = 38/1049 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  L  +++++ A   P +A+TD   ++ ALE  +   + GI P
Sbjct: 2    SFVPLHLHSEYSLLDGASQLPRLVEQVVAMGLPGLALTDHGVMYGALELVKLCKSKGITP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
            IIG ++ +   D    + +    +P    +VL     +GY+ L++L +  +L   QGK  
Sbjct: 62   IIGNEMYVINGDIRDKSRK----YPKYHQVVL-AKNTQGYKNLVKLTTISHLHGIQGKGI 116

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   +L +   EGLI+ +G  +G + +A      ++A +    +++ FGD  Y+ 
Sbjct: 117  FSRPCINKEYLVQY-KEGLIVTSGCLAGEVPQAILQRRPEIAREVAAWYQEQFGDDYYIE 175

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR+   Q+V++A    +P++ TN+S F+S  D EAHD L+ +     +++K+
Sbjct: 176  IQDHGYQEDRFVNVQLVRIARELGIPIILTNDSHFISCWDVEAHDALLCIQTGKSLTEKN 235

Query: 245  RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   YLK+  EM  +  D      + EA+ NT+++  +           +P +   
Sbjct: 236  RLRYTGTEYLKSPEEMRRLCRDHLEQEVIDEAIANTLKVLEKIEGYDLFGEMRMPDYPVP 295

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                     ++ L   A  GL  R   G        Q+Y++RL FELN+I +  FS YFL
Sbjct: 296  PG----HSADSYLTELAWQGLAKRC--GVAQPDQIPQNYQERLRFELNIIQQKGFSSYFL 349

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D++++A++  IPVGPGRGS AGS+ AYAL IT+IDP+++ LLFERFLNP+R SMPD 
Sbjct: 350  VVWDYVRYAREQGIPVGPGRGSAAGSLVAYALQITNIDPVKYGLLFERFLNPERQSMPDI 409

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC +RR E+I YV  KYG ERVAQIITF  + +KA L+DVGR L +PYS+ D++ KL
Sbjct: 410  DTDFCIERRGELIDYVTRKYGQERVAQIITFNRMTSKAILKDVGRVLDIPYSEADKMAKL 469

Query: 479  IPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L+ +  +      F+E    DP+  R +E+++ LEG  +    HAAG+VI
Sbjct: 470  IPVSRGKPAKLEEMIGEDTPAPEFKEKYEKDPTTHRWIELARLLEGTNKTFGVHAAGVVI 529

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               PL ++VP+  +      +TQ++M+ IE  GL+K DFLGL+ LT++Q++++ + +   
Sbjct: 530  AKDPLDEIVPLQYN-NEGQIITQYSMEDIESLGLLKMDFLGLRNLTMIQRAVELIREHNG 588

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            V +DL  +P DD +TY LL      GIFQLESSGM+Q +  ++P  +EDI ++++LYRPG
Sbjct: 589  VNIDLDNLPLDDKKTYQLLEKGELEGIFQLESSGMKQVVRELKPSNLEDISSVLALYRPG 648

Query: 654  PID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + +RK+G++ +   H L+ P+L++T G I+YQEQ+M+IAQ ++GY+L +AD
Sbjct: 649  PLDTGMIPDFIDRKHGRKPVTYAHELLKPILQDTYGAILYQEQIMRIAQDMAGYTLGQAD 708

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM+K +E+F+ GA+K G+S+ +A  +F+ +  FA+Y FNKSH+ AY +
Sbjct: 709  LLRRAMGKKKVSEMEKHREQFVQGAAKRGVSQEVATELFDQMVAFAEYCFNKSHSTAYGL 768

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            I++QTA++K +YP E++AA ++    + +K++++        IQI PP +N   +DF   
Sbjct: 769  ITFQTAYLKANYPTEYMAALLSSVGGDQDKVQRYITYCLSIGIQIQPPDINRSGMDFTPQ 828

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             + I + L A+K VG    ++I+ A  AD PF SL DFC RVD + +NRR LE+L+ AGA
Sbjct: 829  GSSILFGLGAVKNVGEGAIQNILAARQADGPFTSLADFCQRVDLRIVNRRALEALICAGA 888

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITLEKFS 944
             DC   +R QL+  LD I  +A    K++     ++F            F +        
Sbjct: 889  FDCISGNRKQLIADLDPILSWAAQRAKSKAIGQASLFDLLGSSGSAGNGFVEAPRGPVTE 948

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                  +   E+ +LGFY S HPL   +   R +      +        ++ + A+V + 
Sbjct: 949  DFPPQEKLRLERELLGFYVSDHPLRRIQEQARLLAPVNLADLGGCAADASVGVLALVTAI 1008

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +   T+KG R+  +   +     EA  FP
Sbjct: 1009 KNVTTKKGDRMAILQLEDLTGSCEAVIFP 1037


>gi|217977860|ref|YP_002362007.1| DNA polymerase III, alpha subunit [Methylocella silvestris BL2]
 gi|217503236|gb|ACK50645.1| DNA polymerase III, alpha subunit [Methylocella silvestris BL2]
          Length = 1152

 Score = 1092 bits (2825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 536/1032 (51%), Positives = 708/1032 (68%), Gaps = 16/1032 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHSS+SL EGA+ +  +    AAD  PA+AITD NNLF ALEFS+K    G+QP
Sbjct: 11   GFVHLHVHSSFSLREGAMGIGKLAKLAAADHMPALAITDGNNLFGALEFSEKLAKEGVQP 70

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +D +D   ++ +G+       SIVL+     GY  L+ LVSR +L  +     
Sbjct: 71   IIGAELTLDFRDGAAISARGEELGAGRASIVLIAKDEAGYLNLMHLVSRAWLDPEPGDPP 130

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + +  L+   T G+I L+GG +GP+DRAF    S+ A  R     +LF DRLY+ LQRH
Sbjct: 131  HVPIERLR-GRTGGMIALSGGPAGPLDRAFAARRSEQAFARAAQLAELFPDRLYIELQRH 189

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +R  E +++ LAY   LPLVA N   F +  DYEAHD L+ +A  TV+    R ++
Sbjct: 190  NLAAEREAEPRLLDLAYRKSLPLVAANEPYFGTSSDYEAHDALICIAEGTVIGDGARRQL 249

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+H  K R+EMV++F+DLPEA  NTVEIARRC+F      P+LPRF         + E 
Sbjct: 250  SPEHRFKTRAEMVALFADLPEASRNTVEIARRCAFRPLTRKPLLPRF---SATGELEAEA 306

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR++A AGLE R+    +AKG+ A+DYR+RL FEL+VI +MKF GYFLIV+DFI++AK
Sbjct: 307  DALRSEAEAGLEARIEAHGLAKGFTAEDYRKRLAFELDVIVKMKFPGYFLIVSDFIKYAK 366

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SMPDFDIDFCQDRRD
Sbjct: 367  SQGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQDRRD 426

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV+ +YG ++VAQIITFGS  A+  LR+VGR L+MP  QVDRL KL+P +PA PVS
Sbjct: 427  EVIAYVRRRYGADKVAQIITFGSFLARGVLRNVGRVLEMPLGQVDRLAKLVPQNPAAPVS 486

Query: 489  LQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L+ AI  + R +EA  A+P V ++L+I+Q LEGLY +ASTHAAGIVIGDRPL QLVP+YR
Sbjct: 487  LKQAIDSEPRLKEAAEAEPRVAKMLQIAQTLEGLYSNASTHAAGIVIGDRPLEQLVPLYR 546

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D +SD+P TQFNMKW+E AGL+KFDFLGLKTLT L   +  L +RG+++++  IP DD +
Sbjct: 547  DPKSDMPATQFNMKWVEPAGLVKFDFLGLKTLTTLSTCVKLLRRRGIEIEIDKIPLDDSK 606

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L    T+G+FQLES+GMR+AL  M  D  EDIIALV+LYRPGP+ NI  Y   K G
Sbjct: 607  TYAMLGRGETIGVFQLESAGMRRALVDMHADRFEDIIALVALYRPGPMANIPRYCAVKAG 666

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E+   IHP I+ +LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK EMD 
Sbjct: 667  EEEADYIHPKIEGVLKETFGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGKKIKAEMDA 726

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q++RF+ GA  NG++K  A  IF+LLAKFADYGFNKSHAAAYA+I+YQTAW K +YP+EF
Sbjct: 727  QRDRFLRGAIDNGLAKAKANEIFDLLAKFADYGFNKSHAAAYALIAYQTAWFKANYPLEF 786

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAI 842
            LAASMTL+  N +K+ +F  +AR+ N  + PPS+     DF+V     G+ +I Y+L AI
Sbjct: 787  LAASMTLDKANTDKLAEFSNEARRLNGAVEPPSIQRSGADFEVCANDAGELQIRYALGAI 846

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KGVG   A  ++ A   KPF    DF +R+D + +N+R+LESLV AGA D     R ++ 
Sbjct: 847  KGVGQGHAEALVAARNSKPFRDFADFSARIDPRAINKRMLESLVAAGAFDEMEPDRARVF 906

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             +++ I   A   ++ R      +F        D++ L K +    + R   E   +GF+
Sbjct: 907  AAIETILASAHRRDEERRAGQSALFG---AGAEDRMPLPKVAPWTLAERLRREFDSVGFF 963

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTF 1020
             SGHPLD Y  I+ ++ ++ + E    ++      RLAA V+ +Q+++T+ GS++G V  
Sbjct: 964  LSGHPLDAYATIMSRLRVQRWTEFSRAVKLGATGGRLAATVLDRQERRTKSGSKMGIVQL 1023

Query: 1021 SEPAKEYEANFF 1032
            S+P+ +YEA  F
Sbjct: 1024 SDPSGQYEAILF 1035


>gi|326621935|gb|EGE28280.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Dublin str. 3246]
          Length = 1144

 Score = 1092 bits (2825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1032 (40%), Positives = 605/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K A+   PA+AITD  NL   ++F      AGI+PI+G   ++  + 
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNE- 59

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                          +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 60   ---------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEALENTVEIA+RC+  +++    LP+F   +        E+ L  KA  GL
Sbjct: 230  MCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDYLVKKAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D     Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I++A      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG     A +V++ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|312876042|ref|ZP_07736031.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus
            6A]
 gi|311797240|gb|EFR13580.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus
            6A]
          Length = 1140

 Score = 1092 bits (2825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1033 (37%), Positives = 601/1033 (58%), Gaps = 30/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA  ++ + +++      A+AITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGVMYGVIDFYKAAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +               +  ++LL    EGY+ L ++VS  ++        
Sbjct: 62   IIGCEVYLAPRTRFDKEPNIDND---IHHLILLAMDNEGYKNLSKIVSIGFVEG-FYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L +  ++GL+ LT   +G I +       +     +  +K++FG+  Y  LQ H
Sbjct: 118  RVDREVLSKY-SKGLVALTSCLAGEIPKLILREQKEKLYDAISFYKEVFGENFYFELQYH 176

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +  +++++L+  +++P+VATN+  +L  ED   HD+L+ +     +S  +R   
Sbjct: 177  YIDEQRFVNNELMRLSKKYKIPIVATNDVHYLRREDRNLHDILLCIQTGKTISDSNRMEF 236

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  IF  +PEAL+NT+EIA +C+   +     LP+F   E    + + 
Sbjct: 237  PTDEFYLKSPEEMQQIFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEG---KSDA 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+  A+ G + R ++   A          RL  EL VI  M F  YFLIV DFI +A
Sbjct: 294  FEYLKELALEGFKKRYSKDDKAAY-------DRLMMELQVIKDMGFVEYFLIVQDFINYA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDFC  RR
Sbjct: 347  KQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFCYQRR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP  P   +
Sbjct: 407  QEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGIPYSQVDEIAKMIPFSPGMTI 466

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   ++    + +V ++++ ++ LEG+ RHAS HAAG+VI   P++ LVP+ R
Sbjct: 467  D-KALEINHELKKIYEQNDTVRKIIDTARNLEGMPRHASVHAAGVVISSCPITDLVPLAR 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL  I ++D 
Sbjct: 526  --TEDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDRIDYNDK 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y  ++   T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I VY   KN
Sbjct: 584  NVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +EKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM KK  + + 
Sbjct: 644  NREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKKKADILM 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            ++K+RFI GA  NG+ K  A  IF ++  FA Y FNKSHAAAYA+++YQTA++K +Y +E
Sbjct: 704  EEKDRFIEGAMANGVEKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKKYYTIE 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ + +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + L AIK +G
Sbjct: 764  FMTSLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823

Query: 847  TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I++       F  L DF  RVD+  +N+R++E+L+ +GA D  G +R  LL S+
Sbjct: 824  ENVIAQILKEREVKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGINRNSLLASV 883

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            ++I        K +     + F    G  ++    +      +    + E+  +G Y S 
Sbjct: 884  EDIL--VLKQAKKKNANQFSFF-EISGNENESFEYKNMPQPTAQELMKMEKDTIGIYISS 940

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRG-----NNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            HPL+ Y   + K  +    E              I +  ++   + K T+    + +   
Sbjct: 941  HPLERYTEEISKYNVTPLSEISTMSEEDEYKFEQILVCGILKEVKVKLTKNNQTMAFAKL 1000

Query: 1021 SEPAKEYEANFFP 1033
             +     E  FFP
Sbjct: 1001 EDLTDSVEVLFFP 1013


>gi|146308059|ref|YP_001188524.1| DNA polymerase III subunit alpha [Pseudomonas mendocina ymp]
 gi|145576260|gb|ABP85792.1| DNA polymerase III, alpha subunit [Pseudomonas mendocina ymp]
          Length = 1176

 Score = 1092 bits (2824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1065 (40%), Positives = 617/1065 (57%), Gaps = 58/1065 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + +FVHL++H+ YSL++G + +  ++  +A    PA+A+TD +N+ S ++F + A  AG+
Sbjct: 2    TQAFVHLRLHTEYSLVDGLVRVKPLIKAVAGAGMPAVAVTDMSNMCSLVKFYKTAMGAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G  + +   +              +  + LL    +GY+ L EL+SR +   Q   
Sbjct: 62   KPICGADIWMASAEE----------DGPLTRLTLLAMNPKGYRNLTELISRGWAEGQSND 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             V I   W+++   EGLI L+G   G +  A       +AE RL  +  +F DR Y+ +Q
Sbjct: 112  LVIIQRDWVKDAA-EGLIALSGAREGEVGLALLAGDEALAETRLREWMAVFPDRFYLEVQ 170

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R  D       V LA   E PLVATN+  F+ ++D+EAH+  + +     +    RP
Sbjct: 171  RTSRVGDEEYLHAAVSLADRVEAPLVATNDVRFIKQDDFEAHETRVCIGEGRTLDDPRRP 230

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               +   YLK  +EM  +FSDLPEALENTVEIA+RC+  +Q+    LP F       I  
Sbjct: 231  RHYSDQQYLKTPAEMWELFSDLPEALENTVEIAKRCNIDVQLGKYFLPDFPTPNGMGI-- 288

Query: 306  EEENELRNKAVAGLEVR----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              ++ LR+ +  GLE R    L +         Q Y  RL+FEL++I +M F GYFLIV 
Sbjct: 289  --DDYLRHASFEGLEERLQVLLPKDTPDYEAKKQVYVDRLNFELDIIIQMGFPGYFLIVM 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQWAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 347  DFIQWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVD 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV RA    Y   DRL K+IP 
Sbjct: 407  FCMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSYGLADRLSKMIPF 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +  +A   +   RE    D     + ++S KLEG+ R    HA G+VI    L+ 
Sbjct: 467  EVGMTLE-KAYEMEEPLREFLKNDEEAQEIWDMSLKLEGIVRGTGKHAGGVVIAPTKLTD 525

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRG 593
              P+  D      VTQF+   +E+AGL+KFDFLGL+TLT+++ +++ +        A   
Sbjct: 526  FSPIACDEEGGGLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWAMETIHRIQKRDGAADE 585

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              V++  IP DD +TY +L    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPG
Sbjct: 586  DLVNIDFIPLDDKKTYDMLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALFRPG 645

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V  + NRK+G+ ++   HP      ++P+LK T GVI+YQEQVMQIAQ+++GY+
Sbjct: 646  PLQSGMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGVILYQEQVMQIAQVMAGYT 705

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  FI G + NGI   +A NIF+L+ KFA YGFNKSH+
Sbjct: 706  LGGADMLRRAMGKKKPEEMAKQRGGFIEGCANNGIDADLAGNIFDLVEKFAGYGFNKSHS 765

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAY ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   ++I PP VN    
Sbjct: 766  AAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVILVEECRNMKLRIDPPDVNVSEF 825

Query: 827  DFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLES 884
             F V  D RI Y L A+KGVG      I+E  A+  PF  L DFC+RVD K++N+R LE+
Sbjct: 826  KFTVNDDGRIVYGLGAVKGVGEGPVEAIVECRAEGGPFKDLFDFCNRVDLKRINKRTLEA 885

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL S++   + A+   ++  + H ++F  
Sbjct: 886  LIRSGALDRLGPYYQDELKAYQASVDKNRAVLLASMEEAVQSAEQTARSAESGHMDLFGG 945

Query: 930  EKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                    +     K        R + E+  LG Y SGHP+D Y+  +R+   +   E  
Sbjct: 946  LFAEPEADVYANHRKARELPIKERLKGEKDTLGIYLSGHPIDEYEGEIRRFARQRIVELK 1005

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A M+V+ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1006 PARDTQ--TIAGMIVNLRVMKNKKGDKMGFITLDDRSGRIEASLF 1048


>gi|300715411|ref|YP_003740214.1| DNA polymerase III subunit alpha [Erwinia billingiae Eb661]
 gi|299061247|emb|CAX58356.1| DNA polymerase III subunit alpha [Erwinia billingiae Eb661]
          Length = 1160

 Score = 1092 bits (2824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1045 (40%), Positives = 604/1045 (57%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G      ++ K A+   PAI ITD  NL   ++F   A   G++
Sbjct: 4    PRFIHLRVHSDYSMVDGLAKTGPLVKKAASLGMPAIGITDYLNLCGLVKFYGGAHGQGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG                       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIIGA----------DFKVSSDAMGDDLGQLTILAANNTGYQNLTLLISKAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E+G EGLI+L+GG  G + +     +     + L  +++ F +R Y+ L R
Sbjct: 114  PIIDRDWLIELG-EGLILLSGGRRGDVGQMLLRGNHAQVAECLAFYQQYFPERYYLELIR 172

Query: 189  HRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V+LA  + +P+VATN   FL   D++AH++ +A+     +    RP 
Sbjct: 173  TGRQDEETWVHAAVELAIANSIPVVATNEVCFLEAGDFDAHEIRVAIHDGFTLDDPKRPK 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL+   EM  +FSD+PEAL N+VEIA+RC+  +++    LP+F   E       
Sbjct: 233  NYSPQQYLRTEEEMCELFSDIPEALANSVEIAKRCNVTIRLGEYFLPQFPTGEM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL      A  +     +Y +RL+ ELNVI +M F GYFLIV +F
Sbjct: 288  TEDFLVMKSREGLEERLEFLFPDAAVRAEKRPEYDERLEIELNVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP +P
Sbjct: 408  MEKRDLVIEHVAEMYGRKAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPEP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        +D+
Sbjct: 527  PLYCDENGNFPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINARRKKQGEPPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PD  ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDSFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   GI   +AV IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKNPVEMAKQRGGFEDGAKSRGIEGELAVKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGQYQFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG       +EA  +   F  L D C+R D+KKLNRRVLE LV +G
Sbjct: 827  DDGEIVYGIGAIKGVGEGPIEAFIEARNEGGYFRELFDLCARTDTKKLNRRVLEKLVMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ +L    K A    K       ++F    +     + +         
Sbjct: 887  AFDRLGPHRAALMSALPEALKAADQHAKAEAIGQADMFGVLAEEPAHIEKSYADIKRWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V+ + E+  LG Y +GHP++ Y   + +  G    ++   T RG       +VV+ +  
Sbjct: 947  QVQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKMTMAVGLVVAARVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|319405608|emb|CBI79231.1| DNA polymerase III alpha subunit [Bartonella sp. AR 15-3]
          Length = 1140

 Score = 1092 bits (2824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 580/1022 (56%), Positives = 746/1022 (72%), Gaps = 8/1022 (0%)

Query: 17   HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
            HS+YSLLEGAL +  I     +D  PAIAITDTNNLF ALEFSQ     GIQPIIGCQL 
Sbjct: 2    HSAYSLLEGALKIKQITQHAISDNMPAIAITDTNNLFGALEFSQSCFIDGIQPIIGCQLA 61

Query: 77   IDMQDNLKMTNQGKTPFP-TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            ID  D    ++  K        SI+L  ++  GY  L++LVSR YL         I   W
Sbjct: 62   IDFGDENCNSSLAKLRHSSDFSSIILFAASEIGYANLVQLVSRAYLDKSDVDCPHIKADW 121

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY 195
            L     +G+I LTGG SGPI+ A   +  + A KRL   KK+F DRLYV LQR+  YD+ 
Sbjct: 122  LL-THHKGIIALTGGPSGPINLALAEDRKERAVKRLTYLKKIFSDRLYVELQRYSSYDQK 180

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
             E+ +V+LAYT+ELPLVATN + FL++E YEAHD LMAVA   VVS  DR RVTP+HYLK
Sbjct: 181  VEAALVELAYTYELPLVATNEAFFLNKEGYEAHDALMAVAEGQVVSNPDRKRVTPEHYLK 240

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQKEEENELRN 313
            ++ EMVS+FSDLPEALEN+VEIA RC     +  PILPRFIE   D   + + E  EL +
Sbjct: 241  SQDEMVSLFSDLPEALENSVEIALRCHAYAPIRKPILPRFIESSADLSSVLEAEAKELLD 300

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            +A +GL++RL    +A+GY   DY QRL++E+++I RM+FSGYFLIV+DFI+WAK ++IP
Sbjct: 301  QAESGLKMRLETIGLAEGYTIADYEQRLNYEISIITRMQFSGYFLIVSDFIKWAKAHDIP 360

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+RR+EVIRY
Sbjct: 361  VGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRISMPDFDIDFCQERREEVIRY 420

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAI 492
            VQ KYG  +VAQIITFG LQA+A LRDVGR L++PY QVD L KL+P  P   V L +AI
Sbjct: 421  VQEKYGCNQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVPATPGSNVELAKAI 480

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
             D+ +F E +  DP + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVPMYRD RSD
Sbjct: 481  IDEPKFEEEKKKDPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVPMYRDPRSD 540

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
            +PVTQFNMK++E++GL+KFDFLGLKTLT+L+ ++DF+A++G+K++LS IP +D  TY ++
Sbjct: 541  MPVTQFNMKYVEQSGLVKFDFLGLKTLTVLKMAVDFVARKGIKINLSCIPLNDEVTYAMM 600

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN RK+ +E+I 
Sbjct: 601  SRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIATYNIRKHKEEEIT 660

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
            SIHP ID ++KETQGVI+YQEQVMQIAQ L+GYSL EAD+LRRAMGKKI +EM +Q+ RF
Sbjct: 661  SIHPKIDHLVKETQGVIVYQEQVMQIAQELAGYSLGEADLLRRAMGKKIHKEMQEQRTRF 720

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            +SGA   GI K  A  IF+LLAKFADYGFNKSHA AYA++SYQTA+MK H+PVEFLAASM
Sbjct: 721  VSGAVDGGIDKDQANVIFDLLAKFADYGFNKSHATAYAIVSYQTAYMKAHHPVEFLAASM 780

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            T +M N +K+  F ++A +  I+++ P V T    F+VG+N IYYSL+A+KGVG     H
Sbjct: 781  TYDMTNTDKLNDFRREALRLGIEVIAPCVQTSHRIFEVGENCIYYSLSAVKGVGDMVVDH 840

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            I+    DKPF  LEDFC R+D + +N+R +ESL++AGA DCF  +R  LL SL  +   A
Sbjct: 841  IVARRGDKPFRDLEDFCERIDPRIVNKRAMESLIYAGAFDCFNIAREVLLASLATLNARA 900

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              +  N ++   +IF    G     I L + S  +S+ +  +E + +GFYFS HPL  Y+
Sbjct: 901  LRILDNNSSGQIDIFGMIGGLKEPLI-LSQVSPWSSAEKLYHEFQTIGFYFSAHPLSEYQ 959

Query: 973  PILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L K  ++ + +   +I+G     RLA  VV+KQ +K R G ++G + FS+ + +YEA 
Sbjct: 960  DVLIKKRVQTWSDFATSIKGGATAARLAGTVVAKQIRKIRSGKKMGIIQFSDTSGQYEAV 1019

Query: 1031 FF 1032
             F
Sbjct: 1020 IF 1021


>gi|225028022|ref|ZP_03717214.1| hypothetical protein EUBHAL_02291 [Eubacterium hallii DSM 3353]
 gi|224954622|gb|EEG35831.1| hypothetical protein EUBHAL_02291 [Eubacterium hallii DSM 3353]
          Length = 1160

 Score = 1092 bits (2824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1047 (35%), Positives = 577/1047 (55%), Gaps = 39/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +  +L +       ++AITD   ++  ++F +KA   GI+P
Sbjct: 2    AFTHLHVHTEYSLLDGSSKIKELLPRAKELGMDSLAITDHGVMYGVIDFYKKAKEVGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +          +          +VLL    +GY+ L+++V+R +         
Sbjct: 62   ILGCEIYVAPGSRFDR--EQGRGEDRYYHLVLLAENNQGYKNLMKIVTRGFTEG-YYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L++   EG+I L+   +G I           A       + +F  +  ++ LQ 
Sbjct: 119  RVDYEVLEKYH-EGIIALSACLAGEIPNKILKEDFDGARAAANKMRDIFGENNFFLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +    + +++L+    +P+V TN+  ++ EED   HD+L+ +     VS +DR R
Sbjct: 178  HGIRQQTQVNTSLIRLSRELGIPMVVTNDVHYIREEDAVPHDLLLCIQTGKKVSDQDRMR 237

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +YLK+  EM  +F    EA++NT +IA RC+  +      +P+F   E  D    
Sbjct: 238  YEGGQYYLKSEEEMQKVFPYAREAMDNTHKIAERCNVEIVFGEQKVPKFDVPEGYDAF-- 295

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L+     GL  R            Q+ ++RL +EL+ I  M +  YFLIV DFI++
Sbjct: 296  --SYLKELCETGLVKRYGD------PPPQELQERLSYELSTIKNMGYVDYFLIVWDFIRF 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   I VGPGRGS AGS+ +Y L IT+IDP+R+ L+FERFLNP+R+SMPD DIDFC +R
Sbjct: 348  AKSQGIAVGPGRGSAAGSIVSYCLEITNIDPIRYQLIFERFLNPERVSMPDIDIDFCYER 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG ++V QI+TFG++ A+ A+RDVGR L +PY QVD + K+IP +    
Sbjct: 408  RQEVIDYVYEKYGKDKVVQIVTFGTMAARMAVRDVGRVLDIPYVQVDNVAKMIPMELGIT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   ++A  +D  V  L+++S +LEGL RH S HAAG+VIG +PL + VP+ 
Sbjct: 468  IE-KALKSNPELKQAYESDDVVKNLIDMSMRLEGLPRHTSIHAAGVVIGSKPLDEFVPLS 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            R    ++  TQF M  IE+ GL+K DFLGL+TLT++Q +   + ++ G    +  I +DD
Sbjct: 527  RGA-DNVITTQFTMTTIEELGLLKMDFLGLRTLTVIQDAARMIGKKLGHDFSIDTIDYDD 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             + Y ++    T G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   K
Sbjct: 586  AKVYEMIGQGKTEGVFQLESAGMKSFMKELKPTNLEDVIAGISLYRPGPMDFIPKYIKGK 645

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
              ++ I    P ++ +L  T G I+YQEQVMQI   L+GY+L  +D++RRAM KK  + M
Sbjct: 646  QNQDSIQYTCPELEEILAPTYGCIVYQEQVMQIVMRLAGYTLGRSDLVRRAMSKKKGDVM 705

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             ++++ F+         G  K GI +  A  IF+ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 706  ARERQNFVYGNEEEGVEGCIKRGIPEETANKIFDEMIDFAKYAFNKSHAAAYAVVSYQTA 765

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W++ +YPVEF+AA +T  + N +KI ++    R   I I+PP +N   V F V  + I Y
Sbjct: 766  WLRCYYPVEFMAALLTSVITNPKKITEYINTCRVMGISILPPDINEGEVGFSVAGDSIRY 825

Query: 838  SLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAAIK +G +    +  E  A+  +  L+DF  R+ SK++N+R +E+L+ +GALD FG 
Sbjct: 826  GLAAIKSLGKSVIDVMTQEREANGKYKDLKDFMGRLTSKEINKRTIENLIKSGALDSFGK 885

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     + +     +K   +   ++F    E+     ++        + + +   
Sbjct: 886  TRKQQMLVYPVVLEQVNREKKESMSGQMSLFDFFSEEEKKEYEMQYPDVGEYDDAQKLAL 945

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+ Y   + K       +              G +  +  ++ +   
Sbjct: 946  EKDVLGIYVSGHPLEKYMDSIEKQTTARSTDFEPDEESGRAIVRDGQHYVVGGLISNITA 1005

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + +VT  +     E   FP
Sbjct: 1006 KLTKNNQNMAFVTLEDLYGTVEIIVFP 1032


>gi|304436411|ref|ZP_07396386.1| DNA-directed DNA polymerase III alpha subunit [Selenomonas sp. oral
            taxon 149 str. 67H29BP]
 gi|304370575|gb|EFM24225.1| DNA-directed DNA polymerase III alpha subunit [Selenomonas sp. oral
            taxon 149 str. 67H29BP]
          Length = 1142

 Score = 1092 bits (2824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1038 (36%), Positives = 601/1038 (57%), Gaps = 30/1038 (2%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            + S +F HL VH+ YSLL+GA  + +++ +       A+A+TD   ++ A+ F ++A A 
Sbjct: 10   KTSMAFAHLHVHTEYSLLDGASRIKDLVRRTKELGMDAVAMTDHGVMYGAVAFYKEAKAQ 69

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI PIIGC++ +  +   +      T       ++LL     GY+ L++L+S   +    
Sbjct: 70   GIHPIIGCEVYLAPRQRQERAEVNGT---RYYHLILLAENECGYRNLVQLISLANIEG-Y 125

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYV 184
                RI    L      GLI L+   +G I +A      ++A++ +  ++ +F  D  ++
Sbjct: 126  YYKPRIDKELLHRFHD-GLIALSACVAGEIPQAILRGDMELADQLVREYRDIFGKDNFFL 184

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +Q H   +       +  LA  +++ L ATN+  ++  ED E HD+L+ V     ++  
Sbjct: 185  EVQNHGLPEEMTVNRALRDLAKKYDIGLTATNDVHYVHAEDSEFHDILLCVQTGRTLNDP 244

Query: 244  DRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            DR R + PD+YLK+  EM  +F+D P A+ENT +IA RC          LP +      D
Sbjct: 245  DRMRFSGPDYYLKSEEEMSDLFTDYPGAIENTAKIAARCQVDFTFGELQLPYYPLP---D 301

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                ++  LR   +  L  R             + RQRLD+EL VI +M ++ YFLIV D
Sbjct: 302  GYTTDDAYLRALCIERLPARYPTA-------RDEVRQRLDYELGVIHKMGYASYFLIVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI +A+ + + VGPGRGS AGS+ AY L IT+IDPL+++LLFERFLNP+R+SMPD DIDF
Sbjct: 355  FINYARGHGVAVGPGRGSAAGSIVAYLLGITNIDPLQYALLFERFLNPERVSMPDIDIDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
                R  VI YV+ +YG + VAQI TFG++ AK A+RDV R L+MP+ +V  + KL+P +
Sbjct: 415  DDINRGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVARVLEMPFGEVSTITKLVPAE 474

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+ + + FR+    D    R++++++K+EGL R+ S HAAG+VI   PL++ 
Sbjct: 475  LNITLD-RALEESADFRKRYEEDEKTHRVIDLARKIEGLPRNTSIHAAGVVIAKSPLTRQ 533

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP++  V     VT+++   +E  GL+K DFLGL+TLT++  ++  + Q  G+++D+  I
Sbjct: 534  VPVW--VSDGTLVTEYDKDDVEALGLLKMDFLGLRTLTIIDDAVKNIRQSHGIELDVDKI 591

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
            P  D +T  +L    T  +FQ+ES+GM   ++ +QP    D+I  V+LYRPGP+ + +V 
Sbjct: 592  PLVDEKTSRMLCAGDTGAVFQMESTGMTNLVKDLQPKGFVDLIPTVALYRPGPLGSGMVT 651

Query: 661  -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             + +  +GK+++V +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGK
Sbjct: 652  DFIDGLHGKKEVVYLHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGK 711

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  E +  QKE F+ G  KNGI   +A +IF+LL  FADYGFNKSH+AAY ++++QTA++
Sbjct: 712  KKHELLMAQKEIFLQGCEKNGIEAALANHIFDLLTHFADYGFNKSHSAAYGLLAWQTAYL 771

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYPVEF+A  +T  MD  +KI  + Q   Q NI+I+PP +N     F +    I + L
Sbjct: 772  KAHYPVEFMAGVLTSIMDKTDKIPVYIQLCHQMNIKILPPDINASTAGFSIESGAIRFGL 831

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            AA++ VG T    + +   A+  F SL DFC+R+D + LN+R +ESL+  GA D  G  R
Sbjct: 832  AAVRNVGETAIESMEQVRSANGSFRSLIDFCARIDVRILNKRAIESLIKCGAFDSLGTER 891

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQR 957
             QLL SLD+  + A   +++R +    +F  +      ++    +        R   E+ 
Sbjct: 892  NQLLSSLDSAMQDAARTQRDRISGQMGLFGQDTMESIHQVQNAVEVPPSTPRERLMWEKE 951

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRI 1015
              GFY +GHPLD Y+  L    +    + +  +      +R+  ++ + ++  T+KG  +
Sbjct: 952  ATGFYITGHPLDDYRDTLS--CLLPISDILTGLCKDRQLVRIGGILTNTKRYTTKKGDTM 1009

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +    + +   E   FP
Sbjct: 1010 LFAEMEDYSGHIELTVFP 1027


>gi|18309342|ref|NP_561276.1| DNA polymerase III DnaE [Clostridium perfringens str. 13]
 gi|18144018|dbj|BAB80066.1| DNA polymerase III, subunit alpha [Clostridium perfringens str. 13]
          Length = 1192

 Score = 1092 bits (2824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1078 (35%), Positives = 596/1078 (55%), Gaps = 67/1078 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6    FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +  +     +N           +VLLV   +GY+ L+++VS   +        R
Sbjct: 66   LGCEVYVVPKSRKIKSN---DEDNKTYHLVLLVKNEKGYENLMKIVSVASIEG-FYYKPR 121

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   +L+E  +EG+I L+    G + +A    +   A +  + ++  F D  Y+ LQ H 
Sbjct: 122  IDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAAIFYRDTFKDGFYLELQNHG 180

Query: 191  GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R  
Sbjct: 181  IEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRYP 240

Query: 250  PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D  YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F   E      E  
Sbjct: 241  SDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEG----VEPF 296

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYR----------------QRLDFELNVIARMK 352
              LR     GL  RL +    K     D                  +RL++EL VI +M 
Sbjct: 297  EYLRKTCFDGLIDRLEELKPLKEKGIYDIDKVYEIGENNDKVKEDIERLEYELGVIKQMG 356

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            +  YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFERFLNP+R
Sbjct: 357  YVDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERFLNPER 416

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD D DFC + R  VI YV  KYGH+ V+QIITFG++ A+A +RDVGRA+   Y++V
Sbjct: 417  VSMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMNYTYAEV 476

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            DR+ K IP      +  +A+  +   +     +  V  L+++S++LEGL RH+STHAAG+
Sbjct: 477  DRIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVRELIDVSRRLEGLPRHSSTHAAGV 535

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-Q 591
            VI  +PL + VP+ +    +  VTQF+M  +E+ GL+K DFLGL+TLT+++ ++D +   
Sbjct: 536  VIASQPLVEYVPLQK--NDESIVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAVDMIKYN 593

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            RGV +DL  + FDD E Y ++    T+G+FQLES+GM   ++ ++PDC+EDIIA +SLYR
Sbjct: 594  RGVDIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIAGISLYR 653

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+  I  Y + K   + +  I P ++ +L  T GV++YQEQVM+I + L+GYS+  +D
Sbjct: 654  PGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGYSMGRSD 713

Query: 712  VLRRAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADY 759
            ++RRAM KK  + M+++++ FI             G  +NGIS   A  IF+ +  FA Y
Sbjct: 714  LVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSMMDFASY 773

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSHAAAYAVI +QTA++  +YPVEFLAA +   M N +K+ ++ + A +  IQ++PP
Sbjct: 774  AFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLGIQVLPP 833

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
             +N     F V  + I + + AIK VG     +I ++      F SL DFC+++D   +N
Sbjct: 834  DINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGKFTSLMDFCNKIDLSIVN 893

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSD 936
            +R +ESL+ AG  D     R QLL   + I        K   +   ++F    E+   + 
Sbjct: 894  KRSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFGALQEESESNL 953

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------- 988
            +I        N       E+ + G Y SGHPLD Y+  L++      E+ +         
Sbjct: 954  EIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTSITIEKIIEAQKNLNEQ 1013

Query: 989  -------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                            G  + +  ++ +  +K TR  + + +    +     E   FP
Sbjct: 1014 KNVELEDLVLDSSLTDGTRVIIGGILTNVSRKVTRNNTLMAFAKVEDLTGYLECVIFP 1071


>gi|320354498|ref|YP_004195837.1| DNA polymerase III subunit alpha [Desulfobulbus propionicus DSM 2032]
 gi|320123000|gb|ADW18546.1| DNA polymerase III, alpha subunit [Desulfobulbus propionicus DSM
            2032]
          Length = 1173

 Score = 1092 bits (2824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1039 (41%), Positives = 623/1039 (59%), Gaps = 28/1039 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F+HL VHS YS+L+GA+ +++++D        A+A+TD   ++ ALEF +KA  AGI+P
Sbjct: 4    PFIHLHVHSQYSMLDGAIRVSDLIDTAKEFGMEAVALTDHGAMYGALEFYEKAKKAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+  +               F     +V L     GY  L++L S            
Sbjct: 64   LVGCEFYLAENGMEIHDRSAGHNF----HLVALAMNEAGYGNLMKLASLAQTKG-FYYRP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L     EGLI+LT    G I      N    A  R L  +K+FGDRLY+ +Q +
Sbjct: 119  RIDRQTLY-AHQEGLIVLTACLKGEIPWRLTHNDENRARARALELQKVFGDRLYLEIQEN 177

Query: 190  RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++   +Q ++ LA    + LVATN+  +L++E+  AH+VL+ +     ++  +R R 
Sbjct: 178  GLPEQTIANQGLMALAKDLNIKLVATNDCHYLTKEESYAHEVLLCIQTGKTINDPNRFRF 237

Query: 249  TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + Y K+  EM + F+  PEA+ NT+E+A RC+  L       P F  KE + +    
Sbjct: 238  NTNELYFKSGDEMAAQFAYCPEAISNTLEVAERCNLELSFKEHFFPIFPIKENETL---- 293

Query: 308  ENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            E         G + RL    +         + YR RL++E++VI  M F+GYFLIVADFI
Sbjct: 294  ETVFSQACWDGFQQRLDHMREMGPVSAETEKTYRDRLEYEIDVIQEMGFAGYFLIVADFI 353

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAKK  IPVGPGRGSGAGS+ AY + ITDIDP+ + LLFERFLN +R+SMPDFD+DFC+
Sbjct: 354  NWAKKQKIPVGPGRGSGAGSLAAYCMAITDIDPIPYGLLFERFLNVERVSMPDFDVDFCK 413

Query: 425  DRRDEVIRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            +RRDEVI YV+ +YG  + VAQI+ +GS++A+A LRDVGR L +P   VDR+ KL+P + 
Sbjct: 414  ERRDEVIDYVRQRYGGDDYVAQIVAYGSMKARAVLRDVGRVLDIPLPVVDRIAKLVPEEL 473

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +AI  + R REA   D  V  LL I+Q LEGL RH STHAAG+VI  +P+ + +
Sbjct: 474  KITLK-KAIEKEPRLREAM-KDDEVRELLTIAQTLEGLARHKSTHAAGVVISPKPMVEYL 531

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+      +  +TQ++MK+ EK GLIKFDFLGLKTLT++ ++L  +A     +VDL  IP
Sbjct: 532  PVCIGPNKE-ILTQYDMKYTEKTGLIKFDFLGLKTLTVIDRALKLIAYDVGKEVDLRKIP 590

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD +TY+LL    +LG+FQLES GMR+ L  MQP+   D+IALV+LYRPGP+D+ +V  
Sbjct: 591  MDDPKTYNLLCRGDSLGVFQLESDGMRELLIKMQPEQFTDLIALVALYRPGPLDSGMVDT 650

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K+G+       P I  +L+ET GVI+YQEQVM+I+ +L+GYSL +AD+LRRAMGKK
Sbjct: 651  FVETKHGRRPADYPLPQIKSVLQETYGVIVYQEQVMKISNILAGYSLGDADILRRAMGKK 710

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I E M+K++ +F++GA  N I +  A  IF+L+AKFA YGFNKSH+AAYA+++YQTA++K
Sbjct: 711  IPEVMEKERGKFMAGAKVNNIPEDKATYIFDLMAKFAGYGFNKSHSAAYALVAYQTAYLK 770

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYP +FLAA ++ + DN +K+ K+  + RQ  I+++PP +N    DF V ++R+ + LA
Sbjct: 771  AHYPAQFLAALLSCDYDNTDKVVKYINECRQNKIEVLPPDINESFNDFTVINDRVRFGLA 830

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            A+K VG      I+ E  A  P+ SL DFCSRVDS K+NR+V+ESL+ AGA D     R 
Sbjct: 831  AVKNVGGAALDSILAEREAGGPYRSLSDFCSRVDSSKVNRKVIESLIKAGAFDSMSGRRA 890

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDKITLE-KFSVENSSVRFEN 954
            Q +  LD     A+  +++R +   N+FA      K   + ++ L           R   
Sbjct: 891  QYMAMLDQCLDRAKAAQRDRMSGQMNLFAIGQPASKQAEATEVELPADVEEWPELERLAA 950

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  +GF+ +GHPL+     LR+              G  +R+  ++ S ++ K++KG R
Sbjct: 951  EKETVGFFLTGHPLEGVMEDLRRAVDTDIAGVEKLREGQAVRIGGLIASYKEHKSKKGDR 1010

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + + T  + +   E   FP
Sbjct: 1011 MAFTTLEDMSASIEVIVFP 1029


>gi|224582079|ref|YP_002635877.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Paratyphi C strain RKS4594]
 gi|224466606|gb|ACN44436.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Paratyphi C strain RKS4594]
          Length = 1144

 Score = 1091 bits (2823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1032 (40%), Positives = 605/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K A+   PA+AITD  NL   ++F      AGI+PI+G   ++  + 
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNE- 59

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                          +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 60   ---------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIRTGRQDEETYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEALENTVEIA+RC+  +++    LP+F   +        E+ L  K+  GL
Sbjct: 230  MCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDYLVKKSKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D     Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I++A      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG     A +V++ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|300853524|ref|YP_003778508.1| DNA polymerase III subunit alpha [Clostridium ljungdahlii DSM 13528]
 gi|300433639|gb|ADK13406.1| DNA polymerase III, alpha subunit [Clostridium ljungdahlii DSM 13528]
          Length = 1158

 Score = 1091 bits (2823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1059 (36%), Positives = 592/1059 (55%), Gaps = 50/1059 (4%)

Query: 5    LEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            ++K    +V L  H+ YSLL+ +  +  ++ +       ++AITD   ++  +EF ++A 
Sbjct: 1    MDKGKHRWVSLHQHTEYSLLDSSAKIPELIARAKELGMDSMAITDHGVMYGCVEFYKEAR 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            A GI+PIIGC++ +   D     N GK        +VLLV   EGYQ L+++VS   +  
Sbjct: 61   AQGIKPIIGCEIYVSQGDMTIKQNNGKN---ENYHLVLLVKNEEGYQNLMKIVSTASIKG 117

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  R+  ++L+   +EGLI L+   SG +       +   AE+  L +K  F D  Y
Sbjct: 118  -FYYKPRVDHNYLKN-HSEGLIALSACMSGEVQSNILKGNIDKAEETALFYKSAFKDGFY 175

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H    + +   Q++ ++    +PLVATN+  ++ +EDY AHD+L+ +     V +
Sbjct: 176  LEIQYHGIEAQLKINEQLISMSKKLNIPLVATNDVHYIKKEDYRAHDILLCIQTGKTVDE 235

Query: 243  KDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            ++R R   D  YLK+  EM  +FS++PE+LENT++IA +C+F  + H   LP+F   E  
Sbjct: 236  ENRMRYPSDEFYLKSPDEMYDMFSNVPESLENTIKIADQCNFDYEFHKSKLPKFPLPEDT 295

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D        +++    GL  R             + + RL++EL +I +M +  YFLIV 
Sbjct: 296  DPY----EYMKDLCYKGLYKRYND-------VTDELKSRLEYELGIIKKMGYVDYFLIVW 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++A+KN I  GPGRGSGAGS+ AY L IT IDP+++ L+FERFLNP+R+SMPD D D
Sbjct: 345  DFIRFARKNGIMTGPGRGSGAGSIVAYTLEITKIDPIKYKLIFERFLNPERVSMPDIDSD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR EVI YV  KYG + V+QIITFG++ AK  +RDVGRA+   Y +VDR+ K+IP+
Sbjct: 405  FCYERRGEVIDYVVEKYGKDSVSQIITFGTMAAKMCIRDVGRAMNYSYGEVDRIAKMIPS 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   +  +A+  +  F+EA  ++     L++I++ LEGL RH STHAAG+VI   PL  
Sbjct: 465  IPNITID-KALDMNPEFKEAYDSESRTKELIDIARALEGLPRHTSTHAAGVVIASEPLVN 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
             VP+ +    D  VTQF M  +E+ GL+K DFLGL+TLT+L+ +++ + +   +++DL  
Sbjct: 524  YVPLQK--NEDNIVTQFTMNTLEELGLLKMDFLGLRTLTVLRDAVEMIKEDKGIEIDLDT 581

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            I +DD   Y+++    T+G+FQLES G    ++ ++PD +EDIIA +SLYRPGP+  I  
Sbjct: 582  IDYDDKAVYNMIGEGKTVGVFQLESPGFSSFMKELKPDSLEDIIAGISLYRPGPMSEIPK 641

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y   KN  E I  + P ++ +L  T G ++YQEQVMQI + L+GYS+  +D++RRAM KK
Sbjct: 642  YIKNKNNPEGIEYVTPQLEHILSVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKK 701

Query: 721  IKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
                M++++  F+             G  +NGIS+ IA +IF+ +  FA Y FNKSHAAA
Sbjct: 702  KHHVMEEERHNFVYGIVDEKGEIQVPGCVRNGISEKIANDIFDSMMDFASYAFNKSHAAA 761

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YAV++++TA++  +YP EF AA +     + EK+  + + A+   I+IMPPS+N  C  F
Sbjct: 762  YAVVAFRTAYLMYYYPTEFTAAMLNSVKGDSEKVAYYIRFAKSIGIEIMPPSINESCTKF 821

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V D  I + L+AIK VG      I+ +      F  + DFC+ +D   +N+RV+ESL+ 
Sbjct: 822  TVEDGNIRFGLSAIKNVGENVIDSIVRSRSKHGKFKDIVDFCNSIDLDSINKRVVESLIK 881

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGA DCFG  R QL+   + +        K       ++F+  + + S +I         
Sbjct: 882  AGAFDCFGVLRSQLIAVHEKVIDSVINSRKKNIEGQVSLFSQIEDS-SVRIKYPSIEEFK 940

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-------------RGNN 994
                   E+ + G Y SGHPLD Y   L         + V                 G+ 
Sbjct: 941  KLDMLAMEKEMTGLYLSGHPLDEYARTLELQADTKISDIVGRKTLEDNFVEEAKVNDGDR 1000

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +  ++    +K T+    + +    +     E   FP
Sbjct: 1001 VIVGGILSEVSKKITKNNDMMAFAKLEDLYGIMEIIVFP 1039


>gi|197303992|ref|ZP_03169024.1| hypothetical protein RUMLAC_02729 [Ruminococcus lactaris ATCC 29176]
 gi|197296960|gb|EDY31528.1| hypothetical protein RUMLAC_02729 [Ruminococcus lactaris ATCC 29176]
          Length = 1157

 Score = 1091 bits (2823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1047 (35%), Positives = 578/1047 (55%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F ++A   GI P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMYGVIDFYREARKQGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G         +VLL    EGY+ L ++VS+ ++        
Sbjct: 62   ILGCEVYVAPNSRFDREVTGG--DDRYYHLVLLAENNEGYENLTKIVSKGFVEG-YYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L+    +G+I L+   +G + R       + A+ R L ++++F     ++ LQ 
Sbjct: 119  RVDKELLRTYH-KGIIALSACLAGEVPRYLTKGMYEEAKDRALEYQEIFGKGNYFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+     Q+++L+    + LVATN+  +   +D +AHD+L+ +     +S ++R R
Sbjct: 178  HGIPDQQLVNQQLMKLSQETGIELVATNDVHYTYADDEKAHDILLCIQTGKKLSDENRMR 237

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM ++F    +ALENT +IA RCS  ++     LP++   E       
Sbjct: 238  YEGGQYYVKSEEEMAALFPYARQALENTQKIADRCSVEIEFGVTKLPKYDVPEG----YT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+     GL+ R           +Q+ + RL +EL+ I  M +  YFLIV DFI++
Sbjct: 294  SWEYLQKLCYEGLDQRY-------RTPSQELKDRLAYELDTIRHMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + I VGPGRGS AGS+ +Y L IT IDP+ + LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  AKDHGIAVGPGRGSAAGSIVSYCLGITTIDPIHYQLLFERFLNPERVSMPDIDVDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG + VAQI+TFG+L A+  +RDVGR + +PY+ VD + K+IP +    
Sbjct: 407  RQEVIDYVTRKYGKDCVAQIVTFGTLAARGVIRDVGRVMDLPYAYVDSIAKMIPQELGIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   R+   +D +V  L++++++LEGL RH S HAAG+VI  +P+ + VP+ 
Sbjct: 467  ID-KALQMNPELRKLYESDETVTHLIDMAKRLEGLPRHCSMHAAGVVICQKPVEEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            R        TQF M  +E+ GL+K DFLGL+TLT++Q ++    ++   + +  I ++D 
Sbjct: 526  RAA-DGTITTQFIMTTLEELGLLKMDFLGLRTLTVIQNAVQLARKKQPDLQIDKIDYNDK 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
                 + T  T GIFQLES GM+  ++ +QP  +ED+IA +SLYRPGP+D I  Y   KN
Sbjct: 585  AVLDYIGTGKTEGIFQLESGGMKNFMKELQPHSLEDVIAGISLYRPGPMDFIPQYIRGKN 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +  I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK    M+
Sbjct: 645  DRSSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKAAVME 704

Query: 727  KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+++ F+         G  KNGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTAW
Sbjct: 705  KERKTFVYGDEETGVPGCIKNGIDEQTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTAW 764

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPVE++AA MT  +DN  K+ ++    RQ  I+I+PP +N    DF V    I Y 
Sbjct: 765  LKYYYPVEYMAALMTSVIDNPTKVAEYIYVCRQMGIKILPPDINKGEADFSVDGGDIRYG 824

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK-LNRRVLESLVFAGALDCFGY 896
            LAAIK +G    R I+    +   F +LEDF +R+ S++ +N+R++E+L+ AGALD  G 
Sbjct: 825  LAAIKSIGRPVIRAIVNDRKELGEFRNLEDFITRISSRELMNKRLVENLIKAGALDVLGG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I  + Q  +KN      ++F    E+     +I +              
Sbjct: 885  TRKQFMSIYIQIVDHMQQEKKNSMVGQMSLFDMVSEEQKEEFQIRMPDVGEYTKENLLGF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+ Y+   RK+      +              G    +  ++  K  
Sbjct: 945  EKEVLGVYVSGHPLESYEEEWRKVISATTADFQVDPEVGYTKVRDGAREIIGGIIAEKTV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + ++T  +     E   FP
Sbjct: 1005 KHTKTNQMMAFLTVEDLFGTVEVVVFP 1031


>gi|312127676|ref|YP_003992550.1| DNA polymerase III subunit alpha [Caldicellulosiruptor hydrothermalis
            108]
 gi|311777695|gb|ADQ07181.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
            hydrothermalis 108]
          Length = 1140

 Score = 1091 bits (2823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1033 (37%), Positives = 601/1033 (58%), Gaps = 30/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA  ++ + +++      A+AITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGAMYGVIDFYKAAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +               +  +VLL    +GY+ L ++VS  ++        
Sbjct: 62   IIGCEVYLAPRTRFDKEPNIDND---IHHLVLLAMDNDGYRNLSKIVSIGFVEG-FYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L +  ++GL+ LT   +G I +       +     +  +K++FG+  Y  LQ H
Sbjct: 118  RVDREVLSKY-SKGLVALTSCLAGEIPKLILREQKEKLYDAISFYKEVFGENFYFELQYH 176

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +  +++++L+  +++PLVATN+  +L  ED   HD+L+ +     +S  +R   
Sbjct: 177  YIDEQRFVNNELMRLSKKYQIPLVATNDVHYLRREDRNLHDILLCIQTGKTISDSNRMEF 236

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +F  +PEAL+NT+EIA +C+   +     LP+F   E    + + 
Sbjct: 237  PTDEFYLKSPEEMQQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEG---KNDA 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+  A+ G + R      A          RL  EL VI  M F  YFLIV DFI +A
Sbjct: 294  FEYLKELALEGFKKRYKNDDKAAY-------DRLMMELQVIKDMGFVEYFLIVQDFINYA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDFC  RR
Sbjct: 347  KQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFCYQRR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K++P  P   +
Sbjct: 407  QEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGVPYSQVDEIAKMVPFSPGMTI 466

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   ++    + +V R+++ ++ LEG+ RHAS HAAG+VI   P++ LVP+ R
Sbjct: 467  D-KALEINHDLKKIYEQNDTVRRIIDTARNLEGMPRHASVHAAGVVISSCPITDLVPLAR 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL  I ++D 
Sbjct: 526  --TDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDRIDYNDK 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y  ++   T G+FQLESSGM+Q +  ++P+ +EDIIA +SL+RPGP+D I VY   KN
Sbjct: 584  NVYEFISEGNTNGVFQLESSGMKQFMRELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +EKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM KK  + + 
Sbjct: 644  NREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKKKADILM 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            ++K+RFI GA  NGI K  A  IF ++  FA Y FNKSHAAAYA+++YQTA++K +Y +E
Sbjct: 704  EEKDRFIEGAMANGIDKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKKYYTIE 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ + +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + L AIK +G
Sbjct: 764  FMTSLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823

Query: 847  TTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 HI++   +   F  L DF  RVD+  +N+R++E+L+ +GA D  G +R  LL S+
Sbjct: 824  ENVIAHILKEREEKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGINRNSLLASV 883

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            ++I        K +     + F    G  ++    +      +    + E+  +G Y S 
Sbjct: 884  EDIL--VIKQAKKKNANQFSFF-EISGNENESFEYKNMPQPTAQELMKMEKDTIGIYISS 940

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRG-----NNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            HPL+ Y   + K  +    E  A           I +  ++   + K T+    + +   
Sbjct: 941  HPLERYTEEISKYNVTPLSEISAMSEEDEYKFEQILVCGILKEVKVKLTKNNQTMAFAKL 1000

Query: 1021 SEPAKEYEANFFP 1033
             +     E  FFP
Sbjct: 1001 EDLTDSVEVLFFP 1013


>gi|85713117|ref|ZP_01044151.1| DNA polymerase III subunit alpha [Idiomarina baltica OS145]
 gi|85693065|gb|EAQ31029.1| DNA polymerase III subunit alpha [Idiomarina baltica OS145]
          Length = 1159

 Score = 1091 bits (2823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1048 (40%), Positives = 617/1048 (58%), Gaps = 37/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++HS +S+++G   +  I  ++A    PA+A+TD  N    +++   A +
Sbjct: 1    MAADTSFVHLRIHSDFSMVDGLTKVKPICQRVADMNMPAMALTDQMNFCGLVQYYGAAHS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++P+IG  L +           G  P   +  +  L    +GYQ++I+L+S+ YL   
Sbjct: 61   QGLKPLIGADLWV----------WGDYPEGEIFRLTALAMNNDGYQQIIQLISKAYLRGH 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL +    G+I+L+G   G I RA      +  ++ L  +K+ F +R Y+
Sbjct: 111  VQGKPVIDKAWLAQ-HNAGIILLSGAREGDIGRALLKGHQEPLQESLAFYKQYFPERFYL 169

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R  R  +       VQLA  H+LP+VATN  +FL EE++EAH++ +A+     +  K
Sbjct: 170  ELIRTGRAEEEAYLHSAVQLAAEHDLPVVATNEVVFLEEENFEAHEIRVAIHDGYQLGDK 229

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++  EM  +F+DLPEALENTVEIA+RC+  +++    LP F   +   
Sbjct: 230  RRPKKYSPQQYLRSAEEMHELFADLPEALENTVEIAKRCNVTIRLGEYFLPAFPTGDL-- 287

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                E + L   +  GLE RL         +      Y +RL  EL+VI +M F GYFLI
Sbjct: 288  ---TEGDYLVKVSREGLEERLEFLFPDEAERQAKRPPYDERLQTELDVINQMGFPGYFLI 344

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 345  VMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 404

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG + V+QIITFG++ AKA++RDVGR L  PY  VD + KL+
Sbjct: 405  VDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKASIRDVGRVLGHPYGFVDGISKLV 464

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A        E   AD  V  L++ ++ LEG+ R+A  HA G+VI    +
Sbjct: 465  PGDPGMTL-AKAFEQVPELGERYDADEEVKELIDFARILEGVTRNAGKHAGGVVISPTTI 523

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +    +Y D     PVTQF+   +E AGL+KFDFLGL+TLT++Q +LD +  R       
Sbjct: 524  TDFAALYCDDEGKNPVTQFDKNDVESAGLVKFDFLGLRTLTIIQWALDMVNARKKEAGEP 583

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ I  +D + + +L    T  +FQLES+GM++ +  + PD  EDIIALV+L+RPGP
Sbjct: 584  LIDINAISLNDKQCFDVLKRAETTAVFQLESAGMKKLILRLLPDSFEDIIALVALFRPGP 643

Query: 655  IDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +++ +   + +RK+G+EK+        H  ++P+L+ T GVI+YQEQVMQ+AQ+++GYSL
Sbjct: 644  LESGMVDNFIDRKHGREKVSYPDETYQHECLEPILEPTYGVILYQEQVMQVAQVMAGYSL 703

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+E F  GA  N I   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 704  GGADLLRRAMGKKKPEEMAKQREVFREGAHNNNIDPELAMKIFDLVEKFAGYGFNKSHSA 763

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT WMKTHYP EF+AA M+ +MDN +KI     +  +  + ++PP VN     
Sbjct: 764  AYALVSYQTLWMKTHYPAEFMAAVMSADMDNTDKIVTLADECERMGLVLLPPDVNKGVYK 823

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D  R+ Y + AIKGVG      I+EA     PF  L DFC RVD KKLN+RVLE L
Sbjct: 824  FTVDDEQRVVYGIGAIKGVGEAPIEAILEARNEGGPFTDLFDFCCRVDLKKLNKRVLERL 883

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + AGA+D  G  R  L+ SL+   + A    +  +    ++F        + +   EK  
Sbjct: 884  IRAGAMDSLGPHRASLMASLEKAMRQAVQHRQAESIGQADMFGVLTTEPEAVEHEFEKVK 943

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                +V  E E+  LG Y +GHP++ ++  L+   +        T +   + +A +V+  
Sbjct: 944  PWPEAVWLEGERETLGLYLTGHPINRFRAELQHYVVGQLANVNETRKNEYVGVAGLVIDV 1003

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +    ++G R   VT  + +   +   +
Sbjct: 1004 RVITNKRGQRFAIVTLDDKSARMDVMLY 1031


>gi|89075405|ref|ZP_01161822.1| DNA polymerase III subunit alpha [Photobacterium sp. SKA34]
 gi|89048821|gb|EAR54391.1| DNA polymerase III subunit alpha [Photobacterium sp. SKA34]
          Length = 1159

 Score = 1091 bits (2823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1044 (38%), Positives = 611/1044 (58%), Gaps = 37/1044 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G   +  I+ K +    PA+A+TD  NL   ++F   A  AGI+
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKVKPIVKKASELGMPALAMTDFTNLCGLVKFYFAAHDAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG               Q       +  + LL +  EGY+ L  L+S  Y     +  
Sbjct: 64   PIIGA----------DFKVQSAEMGDELFELTLLAANNEGYKNLTLLISEAYQRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL     EGLI+L+GG +G + +A    + ++ +  +  ++  F D  Y+ L R
Sbjct: 114  PVIDKEWLVN-HREGLIILSGGKNGDVGKALLKGNQKMVDSLVAFYQTHFPDSYYLELVR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D        ++LA   +LP+VATN+   L+ + ++AH++ +A+     +   +RP+
Sbjct: 173  TGRVDEEAYLHFAIELAEKADLPVVATNDVRLLTADQFDAHEIRVAIHDGYTLVDPNRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   YL++  EM  +F+D+PEAL+N+VEIA+RC+  +++    LP F   +       
Sbjct: 233  LYSAQQYLRSEEEMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD EL V+ ++ F GYFLIV +F
Sbjct: 288  IEDFLITKSREGLEERLEFLFPDPEVRAARRPEYDERLDIELKVVNQIGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFDIDFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDIDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P +P
Sbjct: 408  MDKRDLVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPAEP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  +A  AD  V  L+++ + LEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAFDAEPQLGQAYDADEEVRDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R V+      ++
Sbjct: 527  PLYCDAEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRLVEQGKDPINI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    +  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPMDDQKSFAMLQRSESTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+ +E +        H  +  +L  T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHAREAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  G+ KNG+   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRAVFEEGSIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQT W+K HYP EF+AA MT +MDN +KI     +  +  ++++PP VN     F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKIISLVDECHRMKLKLLPPDVNKGLYRFNVD 826

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  + Y + A+KGVG     +I+ A      F  L DFC+R+D+KK+N+RVLE L+ +G
Sbjct: 827  EDGAVVYGIGAVKGVGEGPIENIISAREKGGHFKDLFDFCARIDTKKVNKRVLEKLIKSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A+D  G +R  +L +LD+  K A    +       ++F          +           
Sbjct: 887  AMDRLGPNRAAMLATLDDAIKAASQHHQAEAFGQADMFGVLTAAPEEVENKYANIPEAPD 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             V  E E+  LG Y +GHP++ Y   L+       +++  T R     +A +V++ +   
Sbjct: 947  KVWLEGERETLGLYLTGHPINAYISELKHYTTWRLKDAQQTGRDKVATVAGLVIAARVMT 1006

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G+RIG +T  + +   E   F
Sbjct: 1007 TKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|323170976|gb|EFZ56625.1| DNA polymerase III subunit alpha [Escherichia coli LT-68]
          Length = 1140

 Score = 1091 bits (2822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1028 (40%), Positives = 605/1028 (58%), Gaps = 38/1028 (3%)

Query: 26   ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKM 85
                  ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++        
Sbjct: 1    MAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV-------- 52

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
              Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  EGLI
Sbjct: 53   --QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-NEGLI 109

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLA 204
            +L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        V+LA
Sbjct: 110  LLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELA 169

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSI 263
                LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  EM  +
Sbjct: 170  EARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCEL 229

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GLE RL
Sbjct: 230  FADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGLEERL 284

Query: 324  A---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
            A        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGS
Sbjct: 285  AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 344

Query: 381  GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
            GAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG 
Sbjct: 345  GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 404

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E
Sbjct: 405  DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPE 463

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
               AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+ 
Sbjct: 464  IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 523

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTK 615
              +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +L   
Sbjct: 524  SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 583

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVS 673
             T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E+I  
Sbjct: 584  ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 643

Query: 674  I-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
                  H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EEM KQ
Sbjct: 644  PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 703

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+
Sbjct: 704  RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 763

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGT 847
            AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIKGVG 
Sbjct: 764  AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGE 823

Query: 848  TTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL 
Sbjct: 824  GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 883

Query: 907  NIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +  K A    K       ++F    +     + +          V  + E+  LG Y +G
Sbjct: 884  DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 943

Query: 966  HPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            HP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +
Sbjct: 944  HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1003

Query: 1025 KEYEANFF 1032
               E   F
Sbjct: 1004 GRLEVMLF 1011


>gi|312622501|ref|YP_004024114.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kronotskyensis
            2002]
 gi|312202968|gb|ADQ46295.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
            kronotskyensis 2002]
          Length = 1139

 Score = 1091 bits (2822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1033 (37%), Positives = 600/1033 (58%), Gaps = 30/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA  ++ + +++      A+ ITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHLHTEYSLLDGACRIDRLFERVKDLNMNAVGITDHGAMYGVIDFYKTAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +               +  +VLL    +GY+ L ++VS  ++        
Sbjct: 62   IIGCEVYLAPRTRFDKEPNIDND---IHHLVLLAMDNDGYRNLSKIVSIGFVEG-FYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L +  ++GLI LT   +G I +       +     +  +K++FG+  Y  LQ H
Sbjct: 118  RVDREVLSKY-SKGLIALTSCLAGEIPKLILREQKEKLYDAINFYKEVFGENFYFELQYH 176

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +  +++++L+  +++PLVATN+  +L  ED   HD+L+ +     +S  +R   
Sbjct: 177  YIDEQRFVNNELMRLSKKYQIPLVATNDVHYLRREDRNLHDILLCIQTGKTISDSNRMEF 236

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +F  +PEAL+NT+EIA +C+   +     LP+F   E    + + 
Sbjct: 237  PTDEFYLKSPEEMQQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEG---KSDA 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+  A+ G + R      A          RL  EL VI  M F  YFLIV DFI +A
Sbjct: 294  FEYLKELALEGFKKRYKNDDKAAY-------DRLMMELQVIKDMGFVEYFLIVQDFINYA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDFC  RR
Sbjct: 347  KQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFCYQRR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP  P   +
Sbjct: 407  QEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGVPYSQVDEIAKMIPFSPGMTI 466

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   ++    +  V ++++ ++ LEG+ RHAS HAAG+VI   P++ LVP+ R
Sbjct: 467  D-KALEINHELKKIYEQNDMVRKIIDTARNLEGMPRHASVHAAGVVISSCPITDLVPLAR 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL  I ++D 
Sbjct: 526  --TDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDRIDYNDK 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y  ++   T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I VY   KN
Sbjct: 584  NVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +EKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM KK  + + 
Sbjct: 644  NREKIGYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKKKADILM 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            ++K+RFI GA  NGI K  A  IF ++  FA Y FNKSHAAAYA+++YQTA++K +Y +E
Sbjct: 704  EEKDRFIEGAMANGIDKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKKYYTIE 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+A+ +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + L AIK +G
Sbjct: 764  FMASLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823

Query: 847  TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 HI+ E      F  L DF  RVD+  +N+R++E+L+ +GA D  G +R  LL S+
Sbjct: 824  ENVIAHILKEREKKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGLNRNSLLASV 883

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            ++I   A    K +     + F    G  ++    +      +    + E+  +G Y S 
Sbjct: 884  EDIL--AIKQAKKKNANQFSFF-EISGNENESFVYKNMPQPTAQELMKMEKDTIGVYISS 940

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRG-----NNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            HPL+ Y   + K  I    E              I +  ++   + K T+    + +   
Sbjct: 941  HPLEKYTEEISKYNITPLSEISGMSEEDEYKFEQILVCGILKEVKVKLTKNNQTMAFAKL 1000

Query: 1021 SEPAKEYEANFFP 1033
             +     E  FFP
Sbjct: 1001 EDLTDSVEVLFFP 1013


>gi|226323536|ref|ZP_03799054.1| hypothetical protein COPCOM_01311 [Coprococcus comes ATCC 27758]
 gi|225208220|gb|EEG90574.1| hypothetical protein COPCOM_01311 [Coprococcus comes ATCC 27758]
          Length = 1159

 Score = 1091 bits (2822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1047 (36%), Positives = 575/1047 (54%), Gaps = 38/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +   + ++      A AITD   ++  ++F + A AAGI P
Sbjct: 2    NFAHLHVHTEYSLLDGSNKIKEYVARVKELGMTAAAITDHGVMYGVIDFYRAARAAGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC++ +        T  G+        +VLL     GY  L+++VSR +         
Sbjct: 62   VLGCEVYVAPGSRFDKTAVGRDE-DRYYHLVLLAENNTGYANLMKIVSRAFTEG-YYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L+    EG+I L+   +G + R       +  +K  L ++++F     ++ LQ 
Sbjct: 120  RVDYELLETYH-EGIIALSACLAGEVQRNLARGMYEEGKKAALHYEQIFGKGNFFLELQD 178

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     Q+++L+    + LVATN+  +   ED + HD+L+ +     ++ +DR R
Sbjct: 179  HGIPEQRTVNQQLMRLSQEIGIDLVATNDVHYTYAEDEKPHDILLCLQTGKKLADEDRMR 238

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K++ EM ++F   PEALENT +IA RC   ++     LP+F   E       
Sbjct: 239  YEGGQYYVKSKEEMAALFPYAPEALENTQKIADRCHVEIEFGVTKLPKFDVPEGF----T 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GL+ R  +             +RL++EL VI  M +  YFLIV DFI +
Sbjct: 295  SWEYLNKLCFDGLKRRYGEDPDP------ALVERLNYELGVIKSMGYVDYFLIVWDFIHF 348

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N I VGPGRGS AGS+ AY L IT+IDP+R+ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 349  AKSNGIMVGPGRGSAAGSIVAYTLAITNIDPIRYQLLFERFLNPERVSMPDIDVDFCFER 408

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG+LQA+  LRDVGR + +PY+ VD + K+IP +    
Sbjct: 409  RQEVIDYVVRKYGKDRVVQIVTFGTLQARGVLRDVGRVMDLPYAFVDSIAKMIPKELNIT 468

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +++  +   ++    DP V  L+++S++LEGL RH S HAAG+VI  + + + VP+ 
Sbjct: 469  LD-KSLKMNHELKKLYDEDPQVKELIDMSKRLEGLPRHTSMHAAGVVISQKDVDEYVPLA 527

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +++ VTQF M  +E+ GL+K DFLGL+TLT++Q ++  + +  GVK+    + ++D
Sbjct: 528  LGADNNV-VTQFTMTTLEELGLLKMDFLGLRTLTVIQDAIRLVEKSTGVKLVTEKLNYND 586

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                  + T  T GIFQ+ES+GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 587  KAVLDYIGTGKTDGIFQIESAGMKSFMKELRPQSLEDIIAGISLYRPGPMDFIPQYIKGK 646

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I    P + P+L  T G I+YQEQVMQI + L+GYSL  +D++RRAM KK  + M
Sbjct: 647  NHPELITYECPQLKPILAPTYGCIVYQEQVMQIVRDLAGYSLGRSDLVRRAMSKKKGDVM 706

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             ++++ F+         G  KNGI + +A  I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 707  QRERQNFVYGNEEEGIPGCVKNGIDEKVANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 766

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YPVE++AA MT  +DN  K+ ++    RQ  I I+PP +N    DF V +  I Y
Sbjct: 767  YLKYYYPVEYMAALMTSVIDNPGKVAEYIYTCRQMGISILPPDINRGVGDFSVDNGNIRY 826

Query: 838  SLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAAIKGVG      I+        F  L+DF  R+  K++N+R +E+ + +GA D    
Sbjct: 827  GLAAIKGVGRPVIEQIIRDREEHGTFRDLKDFLERLSGKEVNKRAVENFIKSGAFDSLKG 886

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I       +KN      ++F    ++     ++TL              
Sbjct: 887  TRKQFMIIYVQIMDQVAQNKKNSLAGQMSLFDIVDDEQKKEFEVTLPDVGEYQKETMLAF 946

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+ Y+   RK       +              G+   +  M+ SK  
Sbjct: 947  EKEVLGVYISGHPLEEYEEKWRKSISATTLDFQLDEETGRTKVRDGSREIIGGMITSKMI 1006

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+K   + ++T  +     E   FP
Sbjct: 1007 KYTKKNQTMAFITVEDLLGTVEVVIFP 1033


>gi|161612604|ref|YP_001586569.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Paratyphi B str. SPB7]
 gi|161361968|gb|ABX65736.1| hypothetical protein SPAB_00295 [Salmonella enterica subsp. enterica
            serovar Paratyphi B str. SPB7]
          Length = 1144

 Score = 1091 bits (2822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1032 (40%), Positives = 605/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K A+   PA+AITD  NL   ++F      AGI+PI+G   ++  + 
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNE- 59

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                          +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 60   ---------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+++GG  G + R     +  + E+ +  ++  F DR ++ L R    D        
Sbjct: 110  EGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIRTGRQDEETYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEALENTVEIA+RC+  +++    LP+F   +        E+ L  K+  GL
Sbjct: 230  MCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDYLVKKSKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D     Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I++A      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG     A +V++ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|313109045|ref|ZP_07795017.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 39016]
 gi|310881519|gb|EFQ40113.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 39016]
          Length = 1185

 Score = 1091 bits (2821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1060 (39%), Positives = 613/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ +SL++G + +  +   +A    PA+A+TD +N+ S ++F + A  AGI+P
Sbjct: 16   SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 75

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  + +            +     +  + LL   A+GY+ L EL+SR +   Q    +
Sbjct: 76   ICGADIWLA----------SREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEI 125

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   W++E   EGLI L+    G I  A        AE  L  + ++F +R YV +QR 
Sbjct: 126  IIERDWVKEAA-EGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 184

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  D       V LA     PLVATN+  F+ +ED+EAH+  + +     +    RPR 
Sbjct: 185  SRVNDEEHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRT 244

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+ +EM  +FSDLPEALENTVEIA+RC+  +Q+    LP F       I    
Sbjct: 245  YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 300

Query: 308  ENELRNKAVAGLEVR----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ LR+ +  GLE R    L +         Q Y  RL+FEL++I +M F GYFLIV DF
Sbjct: 301  DDYLRHASFEGLEERLEVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDF 360

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 361  IKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFC 420

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + RD VI YV + YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP + 
Sbjct: 421  MEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 480

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +   R+   +D     + E++ KLEG+ R    HA G+VI    L+   
Sbjct: 481  GMTLD-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFS 539

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ + +         V++
Sbjct: 540  PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNI 599

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + 
Sbjct: 600  DFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 659

Query: 659  VV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V  + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ+++GY+L  AD
Sbjct: 660  MVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGAD 719

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  FI G   NGI   +A NIF+L+ KFA YGFNKSH+AAY +
Sbjct: 720  MLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 779

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQTAW+KTH+P  F+AA +T +M N +K+    ++ R   ++I+ P VN     F V 
Sbjct: 780  VSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTVD 839

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D RI Y L AIKGVG      I E  A+  PF++L DFC RVD K++N+R LE+L+ AG
Sbjct: 840  DDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAG 899

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            ALD  G                +R  LL +++   + A+   ++  + H ++F       
Sbjct: 900  ALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEP 959

Query: 935  SDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               +     K        R + E+  LG Y +GHP+D Y+  +R+   +   E       
Sbjct: 960  EADVYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDT 1019

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++V+ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1020 Q--TVAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1057


>gi|310641197|ref|YP_003945955.1| DNA polymerase iii, alpha subunit [Paenibacillus polymyxa SC2]
 gi|309246147|gb|ADO55714.1| DNA polymerase III, alpha subunit [Paenibacillus polymyxa SC2]
          Length = 1221

 Score = 1091 bits (2821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1029 (39%), Positives = 604/1029 (58%), Gaps = 16/1029 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL+GA     ++ + +A    A+A+TD   ++ A+ F +     GI+P
Sbjct: 3    SFVHLHVHSEYSLLDGAARTAELVKQASAYGMKALALTDHGVMYGAIPFYRACVENGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  +      +   +G      +  ++LL     GYQ L++L S  +L        
Sbjct: 63   IIGCEAYMTAGSRKE---RGSRKDQPIYHLILLAKNKTGYQNLMKLCSIGHLEG-FHYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI +  L     EG+I L+    G + +         A +    ++ +FGD  Y+ LQ H
Sbjct: 119  RIDMDALA-AHHEGIICLSACLGGEVPQHLLHGREAEARRAAERYRSIFGDDFYLELQDH 177

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ R   Q++ LA   ++PLVATN+  +L+E D +  DVL+ +     V  ++R R+
Sbjct: 178  GLSEQKRVNPQLIALAKELDIPLVATNDVHYLTEPDADVQDVLICIGTGKTVDDEERLRI 237

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 YLK++ EM  +F  + EA+ NTV IA +C   L+    ILP +     D      
Sbjct: 238  PTRQLYLKSQEEMARLFPHVAEAIANTVRIAEKCELELEFGQSILPEYRPLPED---MTS 294

Query: 308  ENELRNKAVAGLEVRLAQGAI-AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + LR+  V GLE R     +  +    +   QRL++ELN I  M FS YFLIV DFI +
Sbjct: 295  SSYLRSLCVQGLERRYGGDPVWEQPEERERLDQRLNYELNTIDSMGFSDYFLIVWDFIAF 354

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K+ I  GPGRGS AGS+ AY L IT++DP++++LLFERFLNP+R+SMPD DIDF  +R
Sbjct: 355  AHKHKITTGPGRGSSAGSLVAYVLNITNVDPMKYNLLFERFLNPERISMPDIDIDFSDER 414

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV  KYG+E VAQIITFG+L A+AA+RDVGR L +PY +VD+  KLIP      
Sbjct: 415  RDEVIDYVVQKYGNEHVAQIITFGTLAARAAVRDVGRVLNVPYGEVDKAAKLIPAQLGIN 474

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A+      +      P    LL+++ K+EG+ RHASTHAAG+VI   PL+  VP+ 
Sbjct: 475  IR-HALEITPELKALYETKPKTRELLDMAIKVEGMPRHASTHAAGVVISRTPLTDAVPLQ 533

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
             +    +P+TQ++M+ +E+ GL+K DFLGL+TL+++++ + ++A Q G   D S +P DD
Sbjct: 534  -EGSEGVPLTQYSMENLERIGLLKMDFLGLRTLSIIERCMRWIAEQHGETPDFSRVPDDD 592

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              TY LL    T G+FQLES+G+R+ L+ ++P   EDII++V+LYRPGP+  I  +   K
Sbjct: 593  PHTYDLLGKGDTGGVFQLESAGVRRVLKDLKPSVFEDIISVVALYRPGPMGFIPNFIQAK 652

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+ +I   HP ++P+LK+T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E +
Sbjct: 653  HGQIEISYPHPDLEPILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREVL 712

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D ++  F+ G+ K G ++  A  +++++ +FADYGF ++HAAAY V+++QTA++K HYPV
Sbjct: 713  DLERGHFVEGSIKQGYTEEEAGRVYDMIVRFADYGFPRAHAAAYGVLAFQTAYLKAHYPV 772

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKG 844
            +F+A+ +T  M +  K+ ++  + R+ +I ++PP VN   V F  +    I + LAAIK 
Sbjct: 773  QFMASMLTAVMGSHRKVAEYVVECRRMDIAVLPPDVNESGVLFTPLQHGDIRFGLAAIKN 832

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VGT     I+    ++PFDSL DFC RVD +  N+RV+ESL+ AGA D     R QLL  
Sbjct: 833  VGTQAMESILAVRKERPFDSLLDFCRRVDLRVCNKRVIESLIQAGAFDSLTGHRAQLLAM 892

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            LD     A    K R +   ++F   +    D I        ++S + E E+ +LG Y S
Sbjct: 893  LDETVDAAAKWRKERDDLQIDMFGFVEMPNWD-IEYPNVPPFSTSQQLELERELLGLYLS 951

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            GHPLD ++ +L         E         I  A MVVS +   T++G  + ++   +  
Sbjct: 952  GHPLDDFESLLESSQADRLMELSDVPDETVIVTAGMVVSLKTITTKQGKAMAFIELEDQI 1011

Query: 1025 KEYEANFFP 1033
            +  E   FP
Sbjct: 1012 ERCEVVLFP 1020


>gi|168204460|ref|ZP_02630465.1| DNA polymerase III, alpha subunit [Clostridium perfringens E str.
            JGS1987]
 gi|170664100|gb|EDT16783.1| DNA polymerase III, alpha subunit [Clostridium perfringens E str.
            JGS1987]
          Length = 1192

 Score = 1091 bits (2821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1078 (35%), Positives = 595/1078 (55%), Gaps = 67/1078 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6    FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +  +     +N           +VLLV   +GY+ L+++VS   +        R
Sbjct: 66   LGCEVYVVPKSRKIKSN---DEDNKTYHLVLLVKNEKGYENLMKIVSVASIEG-FYYKPR 121

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   +L+E  +EG+I L+    G + +A    +   A +    ++  F D  Y+ LQ H 
Sbjct: 122  IDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAATFYRDTFKDGFYLELQNHG 180

Query: 191  GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R  
Sbjct: 181  IEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRYP 240

Query: 250  PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D  YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F   E      E  
Sbjct: 241  SDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEG----VEPF 296

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYR----------------QRLDFELNVIARMK 352
              LR     GL  RL +    K     D                  +RL++EL VI +M 
Sbjct: 297  EYLRKTCFDGLIDRLEELKPLKEKGIYDIDKVYEIGENNEKVKEDIERLEYELGVIKQMG 356

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            +  YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFERFLNP+R
Sbjct: 357  YVDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERFLNPER 416

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD D DFC + R  VI YV  KYGH+ V+QIITFG++ A+A +RDVGRA+   Y++V
Sbjct: 417  VSMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMNYTYAEV 476

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            DR+ K IP      +  +A+  +   +     +  V  L+++S++LEGL RH+STHAAG+
Sbjct: 477  DRIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVKELIDVSRRLEGLPRHSSTHAAGV 535

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-Q 591
            VI  +PL + VP+ +    +  VTQF+M  +E+ GL+K DFLGL+TLT+++ ++D +   
Sbjct: 536  VIASQPLVEYVPLQK--NDESIVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAVDMIKYN 593

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            RGV +DL  + FDD E Y ++    T+G+FQLES+GM   ++ ++PDC+EDIIA +SLYR
Sbjct: 594  RGVDIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIAGISLYR 653

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+  I  Y + K   + +  I P ++ +L  T GV++YQEQVM+I + L+GYS+  +D
Sbjct: 654  PGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGYSMGRSD 713

Query: 712  VLRRAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADY 759
            ++RRAM KK  + M+++++ FI             G  +NGIS   A  IF+ +  FA Y
Sbjct: 714  LVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSMMDFASY 773

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSHAAAYAVI +QTA++  +YPVEFLAA +   M N +K+ ++ + A +  IQ++PP
Sbjct: 774  AFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLGIQVLPP 833

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
             +N     F V  + I + + AIK VG     +I ++      F SL DFC+++D   +N
Sbjct: 834  DINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGRFTSLMDFCNKIDLSIVN 893

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSD 936
            +R +ESL+ AG  D     R QLL   + I        K   +   ++F    E+   + 
Sbjct: 894  KRSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFGALQEESESNL 953

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------- 988
            +I        N       E+ + G Y SGHPLD Y+  L++      E+ +         
Sbjct: 954  EIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTSITIEKIIEAQKNLNEQ 1013

Query: 989  -------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                            G  + +  ++ +  +K TR  + + +    +     E   FP
Sbjct: 1014 KNVELEDLVLDSSLTDGTRVIIGGILTNVSRKVTRNNTLMAFAKVEDLTGYLECVIFP 1071


>gi|157147384|ref|YP_001454703.1| DNA polymerase III subunit alpha [Citrobacter koseri ATCC BAA-895]
 gi|157084589|gb|ABV14267.1| hypothetical protein CKO_03182 [Citrobacter koseri ATCC BAA-895]
          Length = 1144

 Score = 1091 bits (2821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1032 (40%), Positives = 610/1032 (59%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G    +    
Sbjct: 1    MIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTGHGAGIKPIVGADFHV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  +G      +  + +L +   GYQ L  L+S+ Y    G +   I   WL E+  
Sbjct: 57   ------RGTPLGDELCQLTVLAANNTGYQNLTLLISKAYQRGYGAEGPVIDREWLTEL-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            +GLI+L+GG  G + R+    +S + ++ +  +++ F DR Y+ L R    D        
Sbjct: 110  DGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFSDRYYLELIRTGRQDEETYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V+LA T  LP+VATN+  F++ ED++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170  VELAETRGLPVVATNDVRFINSEDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEDE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEALEN+VEIA+RC+  +++    LP+F   +        E+ L  K+  GL
Sbjct: 230  MCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDFLVKKSKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +      Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLEFLFPDEAVRKEKRPPYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D++ IP DD +++ +
Sbjct: 524  QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGARKNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA   D  F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG     A +V++ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|254236554|ref|ZP_04929877.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa C3719]
 gi|126168485|gb|EAZ53996.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa C3719]
          Length = 1173

 Score = 1090 bits (2820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1060 (39%), Positives = 613/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ +SL++G + +  +   +A    PA+A+TD +N+ S ++F + A  AGI+P
Sbjct: 4    SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  + +            +     +  + LL   A+GY+ L EL+SR +   Q    +
Sbjct: 64   ICGADIWLA----------SREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   W++E   EGLI L+    G I  A        AE  L  + ++F +R YV +QR 
Sbjct: 114  IIERDWVKEAA-EGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 172

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  D       V LA     PLVATN+  F+ ++D+EAH+  + +     +    RPR 
Sbjct: 173  SRVNDEEHLHAAVALASRCNAPLVATNDVRFIKQDDFEAHETRVCIGEGRTLDDPRRPRT 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+ +EM  +FSDLPEALENTVEIA+RC+  +Q+    LP F       I    
Sbjct: 233  YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 288

Query: 308  ENELRNKAVAGLEVR----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ LR+ +  GLE R    L +         Q Y  RL+FEL++I +M F GYFLIV DF
Sbjct: 289  DDYLRHASFEGLEERLEVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 349  IKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + RD VI YV + YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP + 
Sbjct: 409  MEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 468

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +   R+   +D     + E++ KLEG+ R    HA G+VI    L+   
Sbjct: 469  GMTLD-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFS 527

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ + +         V++
Sbjct: 528  PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNI 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + 
Sbjct: 588  DFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 647

Query: 659  VV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V  + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ+++GY+L  AD
Sbjct: 648  MVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGAD 707

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  FI G   NGI   +A NIF+L+ KFA YGFNKSH+AAY +
Sbjct: 708  MLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 767

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQTAW+KTH+P  F+AA +T +M N +K+    ++ R   ++I+ P VN     F V 
Sbjct: 768  VSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTVD 827

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D RI Y L AIKGVG      I E  A+  PF++L DFC RVD K++N+R LE+L+ AG
Sbjct: 828  DDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            ALD  G                +R  LL +++   + A+   ++  + H ++F       
Sbjct: 888  ALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEP 947

Query: 935  SDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               +     K        R + E+  LG Y +GHP+D Y+  +R+   +   E       
Sbjct: 948  EADVYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++V+ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1008 Q--TVAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1045


>gi|15598836|ref|NP_252330.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PAO1]
 gi|116051637|ref|YP_789524.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218890135|ref|YP_002438999.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa LESB58]
 gi|254242338|ref|ZP_04935660.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 2192]
 gi|296387855|ref|ZP_06877330.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PAb1]
 gi|14194674|sp|Q9HXZ1|DPO3A_PSEAE RecName: Full=DNA polymerase III subunit alpha
 gi|9949800|gb|AAG07028.1|AE004784_1 DNA polymerase III, alpha chain [Pseudomonas aeruginosa PAO1]
 gi|13992731|gb|AAG16710.2| DNA polymerase III [Pseudomonas aeruginosa]
 gi|115586858|gb|ABJ12873.1| DNA polymerase III, alpha subunit [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126195716|gb|EAZ59779.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 2192]
 gi|218770358|emb|CAW26123.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa LESB58]
          Length = 1173

 Score = 1090 bits (2820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1060 (39%), Positives = 613/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ +SL++G + +  +   +A    PA+A+TD +N+ S ++F + A  AGI+P
Sbjct: 4    SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  + +            +     +  + LL   A+GY+ L EL+SR +   Q    +
Sbjct: 64   ICGADIWLA----------SREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   W++E   EGLI L+    G I  A        AE  L  + ++F +R YV +QR 
Sbjct: 114  IIERDWVKEAA-EGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 172

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  D       V LA     PLVATN+  F+ +ED+EAH+  + +     +    RPR 
Sbjct: 173  SRVNDEEHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRT 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+ +EM  +FSDLPEALENTVEIA+RC+  +Q+    LP F       I    
Sbjct: 233  YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 288

Query: 308  ENELRNKAVAGLEVR----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ LR+ +  GLE R    L +         Q Y  RL+FEL++I +M F GYFLIV DF
Sbjct: 289  DDYLRHASFEGLEERLEVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 349  IKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + RD VI YV + YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP + 
Sbjct: 409  MEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 468

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +   R+   +D     + E++ KLEG+ R    HA G+VI    L+   
Sbjct: 469  GMTLD-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFS 527

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ + +         V++
Sbjct: 528  PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNI 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + 
Sbjct: 588  DFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 647

Query: 659  VV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V  + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ+++GY+L  AD
Sbjct: 648  MVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGAD 707

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  FI G   NGI   +A NIF+L+ KFA YGFNKSH+AAY +
Sbjct: 708  MLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 767

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQTAW+KTH+P  F+AA +T +M N +K+    ++ R   ++I+ P VN     F V 
Sbjct: 768  VSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTVD 827

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D RI Y L AIKGVG      I E  A+  PF++L DFC RVD K++N+R LE+L+ AG
Sbjct: 828  DDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            ALD  G                +R  LL +++   + A+   ++  + H ++F       
Sbjct: 888  ALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEP 947

Query: 935  SDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               +     K        R + E+  LG Y +GHP+D Y+  +R+   +   E       
Sbjct: 948  EADVYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++V+ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1008 Q--TVAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1045


>gi|146296832|ref|YP_001180603.1| DNA polymerase III DnaE [Caldicellulosiruptor saccharolyticus DSM
            8903]
 gi|145410408|gb|ABP67412.1| DNA polymerase III catalytic subunit, DnaE type [Caldicellulosiruptor
            saccharolyticus DSM 8903]
          Length = 1141

 Score = 1090 bits (2820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1033 (37%), Positives = 608/1033 (58%), Gaps = 30/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+GA+ + ++ +++      +IAITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHVHTEYSLLDGAVRIESLFERVRQLNMHSIAITDHGAMYGVVDFYKAAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +               +  +VLL    EGY+ L ++VS  ++        
Sbjct: 62   IIGCEVYLAPRSRFDKEPNIDND---IHHLVLLAIDNEGYKNLSKIVSIGFVEG-FYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L +  ++GLI LT   +G I +    +  +     +  +K +FG   Y  LQ H
Sbjct: 118  RVDREILSKY-SKGLIALTSCLAGEIPKFILRDQKEKLMDAIGFYKDVFGCNFYFELQYH 176

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +  S++++L+  +++P+VATN+  +L  ED E HD+L+ +     +   +R   
Sbjct: 177  GIDEQRFVNSELIRLSKKYQIPVVATNDVHYLKREDREIHDILLCIQTGKTIHDSNRMEF 236

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM  +F  +PE+L+NT+EIA +C+   +     LP+F   E    + + 
Sbjct: 237  PTSEFYLKSAQEMEEVFGYIPESLKNTLEIAEKCNVEFEFGKINLPKFQLPEG---KSDA 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+  A AG E R ++   A          RL  ELNVI  M F+ YFLIV DFI +A
Sbjct: 294  FEYLKELAFAGFEKRYSKENKAAY-------DRLLMELNVIKDMGFTEYFLIVHDFINYA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+NNI VGPGRGS AGS+ AY L IT++DP++++LLFERFLNP+R+SMPD DIDFC  RR
Sbjct: 347  KQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYNLLFERFLNPERVSMPDIDIDFCYQRR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV NKYG ++V+QIITFG++ A+A++RDVGR L +PY+QVD + K++P  P   +
Sbjct: 407  QEVIDYVTNKYGKDKVSQIITFGTMAARASIRDVGRVLGVPYAQVDEIAKMVPFSPGMTI 466

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   ++    + +V R+++ ++ +EG+ RH S HAAG+VI   P++ LVP+ R
Sbjct: 467  D-KALEVNHDLKKIYEQNETVKRIIDTARSIEGMPRHTSVHAAGVVISSCPITDLVPLAR 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + R +++DL  I ++D 
Sbjct: 526  --TEDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELIKKHRKIEIDLDKIDYNDR 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y  ++   T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I VY   KN
Sbjct: 584  SVYQFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             KEKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM KK  + + 
Sbjct: 644  NKEKIEYLHPKLEPILNVTYGCIVYQEQVMQIFRELAGYSLGRADLVRRAMAKKKADILM 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            ++++RFI GA  NG+ +  A  IFE++  FA Y FNKSHAAAYA+++YQTA++K ++ +E
Sbjct: 704  EERDRFIEGAVANGVDRQTAEKIFEIIEDFASYAFNKSHAAAYAILAYQTAYLKKYFTIE 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ + +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + L AIK +G
Sbjct: 764  FMTSLITSVMNSNEKVGMYIEECRRFGISILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823

Query: 847  TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 HI+ E   +  F  L DF  RVD+  +N+R++E+L+ +GA D    +R  LL S+
Sbjct: 824  ENVISHILKEREQNGEFKDLYDFVMRVDTNTVNKRIIENLIKSGAFDFTKINRNSLLASV 883

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            ++I    Q  +KN        F       +   + +      +    + E+  +G Y SG
Sbjct: 884  EDILTIKQSQKKNAN--QITFF-EISDDQTKIFSYKDLPEPTTEELLQMEKDTIGIYISG 940

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRG-----NNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            HPL+ Y  ++ K  +    E              I +  ++   + K T+    + +   
Sbjct: 941  HPLEKYGDLISKYNVVSLAELSNMTEDDEYKYQQILVCGILKEVKIKLTKNNQTMAFAKI 1000

Query: 1021 SEPAKEYEANFFP 1033
             +     E  FFP
Sbjct: 1001 EDLTDTLEVLFFP 1013


>gi|149377463|ref|ZP_01895205.1| DNA polymerase III subunit alpha [Marinobacter algicola DG893]
 gi|149358230|gb|EDM46710.1| DNA polymerase III subunit alpha [Marinobacter algicola DG893]
          Length = 1160

 Score = 1090 bits (2820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1048 (40%), Positives = 607/1048 (57%), Gaps = 41/1048 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S +FVHL+VHS YS+++G + +  ++ ++A    PA+ +T+ +N+ S + F + A  AG+
Sbjct: 2    SQTFVHLRVHSEYSMVDGLVRVKPLIGRVAELGMPAVGLTEQSNMCSLVRFYKAAMGAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG  L ++  D                 I LL    +GY  L E+VS  Y   Q   
Sbjct: 62   KPIIGADLWVENPDEP----------DNPFRITLLARNNDGYLNLTEVVSLGYTEGQRFG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL E  TEGLI L+G   G + +A       +A +R   +  L+    Y+ LQ
Sbjct: 112  KPIIQRQWL-ENRTEGLIALSGARLGDVGKALMSGKLDLARQRAEYWMSLYPGSFYLELQ 170

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R  D       V+LA     P+VATN+  FL  ED+EAH+  + +  S  +    R 
Sbjct: 171  RTGRPGDEDCLHLNVELAEALGCPVVATNDVHFLHAEDFEAHEARVCIGESRTLDDPRRD 230

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  +   YL++  EM+ +FSD+PEA+ENTVEIARRCS  +++    LP +   +   +  
Sbjct: 231  RRFSDQQYLRSADEMIELFSDIPEAVENTVEIARRCSVPVRMGEYFLPNYPIPDGMTM-- 288

Query: 306  EEENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              +   R  +  GLE RLA    +         + Y +RL+FEL++I +M F GYFLIV 
Sbjct: 289  --DEYFRKVSEEGLEERLAKTLSKDDPEYDSKREAYYKRLNFELDIIIQMGFPGYFLIVM 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK N +PVGPGRGSGAGS+ AYA  ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 347  DFIKWAKNNGVPVGPGRGSGAGSLVAYAQLITDLDPLEYDLLFERFLNPERVSMPDFDVD 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RD VI YV  KYG E V+QIITFG++ AKA +RDV R     Y   D+L K+IP 
Sbjct: 407  FCMEGRDRVIAYVAEKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPF 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A+  + +  E    D     + E++ KLEG+ R+A  HA G+VI    ++ 
Sbjct: 467  EPGMTLE-KALEQEPQLVEFLENDEEAQEIWEMALKLEGVCRNAGKHAGGVVIAPTKITD 525

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K      
Sbjct: 526  FSPLYCDDEGGSLVTQFDKGDVEDAGLVKFDFLGLRTLTIIDWALKMINPRLEKQGKPAL 585

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD  ++ +L    T  +FQLES GM+  +  +QPD +ED+IALV+L+RPGP+ 
Sbjct: 586  DINEIPLDDVPSFDMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPGPLQ 645

Query: 657  NIVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + +RK+G++ +   HP      + P+L+ T GVI+YQEQVMQIAQ+++GYSL  
Sbjct: 646  SGMVDDFIDRKHGRQPMSFPHPDYQYEGLKPVLEPTYGVILYQEQVMQIAQVMAGYSLGN 705

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQK+ F+ G   N I+KT+A NIF+L+ KFA YGFNKSH+AAY
Sbjct: 706  ADMLRRAMGKKKPEEMAKQKQFFLDGCENNDINKTLAENIFDLVEKFAGYGFNKSHSAAY 765

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA +T +M N +K+    ++ R   ++++ P V+     F 
Sbjct: 766  ALVSYQTLWLKAHYPAEFMAAVLTADMQNTDKVVTLVEECRSMGLELLVPDVSRSEYTFT 825

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y L AIKG+G      I    AD  P+  + DFC RVD KK+N+R +E+L+ 
Sbjct: 826  VNDDGAIVYGLGAIKGLGEGPIGSIQAGRADGEPYQDIFDFCRRVDLKKVNKRAMEALIR 885

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS--- 944
            +GA+D  G  R QL+ S+D   + A    +N T    ++F        D       +   
Sbjct: 886  SGAMDKLGAGRAQLMASIDKAIQQAGQQSRNETVGMTDMFGDMLMGGEDGDPYSDVANVR 945

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                  R + E+  LG Y +GHP D Y+  +R+       +     +    R+A +VV++
Sbjct: 946  EWPKKERLKGEKDTLGLYLTGHPFDEYEKEVRRFVRSSIADLKPARQPQ--RVAGLVVAQ 1003

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  KTR GS + ++T  + +   EA  F
Sbjct: 1004 RSMKTRTGSTMAFITLDDRSARIEATLF 1031


>gi|188025561|ref|ZP_02959074.2| hypothetical protein PROSTU_00864 [Providencia stuartii ATCC 25827]
 gi|188023078|gb|EDU61118.1| hypothetical protein PROSTU_00864 [Providencia stuartii ATCC 25827]
          Length = 1144

 Score = 1090 bits (2819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1032 (39%), Positives = 602/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K+AA   PA AITD  NL   ++F   A  AGI+PIIG    +    
Sbjct: 1    MIDGLAKTGPLVKKVAAMGMPAFAITDFTNLCGLVKFYGAAHGAGIKPIIGADFFV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  + +     +  + +L    EGYQ L  L+S  Y    G     I   WL +   
Sbjct: 57   ------ESEQLGDEIAHLTVLARNNEGYQNLTLLISEAYQKGYGAIGPTIHRDWLVK-HK 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + +     +  + ++ L  ++  F    Y+ L R    D        
Sbjct: 110  EGLILLSGGRQGDVGQFLLRGNQALVDECLAFYETHFPGCYYLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +S   RP+  +P  YL++  E
Sbjct: 170  VELATQRGLPVVATNDVRFIESSDFDAHEIRVAIHDGFTLSDPKRPKKYSPQQYLRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEALEN+VEIA+RC+  +++    LP+F   +      + E+ L  ++  GL
Sbjct: 230  MCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPTGDM-----KTEDFLVMRSKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y +RL+ ELNVI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLKFLFPDEKVRAERRPEYDERLEVELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        VD++ IP DD +++ +
Sbjct: 524  QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKNLEPVDIAAIPLDDQKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAIKNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V D     Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  + D C+RVD KK+NRRV+E L+ AGA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARQKGGIFKEIFDLCARVDLKKINRRVMEKLIMAGAFDHLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL++  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  SSLEDALKAADQHAKAEAIGQTDMFGVLAEAPEQVESSYASVPKWPDQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP+  Y   + +       ++   T RG    +  +V+S +   T++G+RIG  T 
Sbjct: 944  YLTGHPITRYLNEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   +   F
Sbjct: 1004 DDRSGRLDIMLF 1015


>gi|107103154|ref|ZP_01367072.1| hypothetical protein PaerPA_01004223 [Pseudomonas aeruginosa PACS2]
          Length = 1173

 Score = 1090 bits (2819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1060 (39%), Positives = 613/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ +SL++G + +  +   +A    PA+A+TD +N+ S ++F + A  AGI+P
Sbjct: 4    SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  + +            +     +  + LL   A+GY+ L EL+SR +   Q    +
Sbjct: 64   ICGADIWLA----------SREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   W++E   EGLI L+    G I  A        AE  L  + ++F +R YV +QR 
Sbjct: 114  IIERDWVKEAA-EGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 172

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  D       V LA     PLVATN+  F+ +ED+EAH+  + +     +    RPR 
Sbjct: 173  SRVNDEEHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRT 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+ +EM  +FSDLPEALENTVEIA+RC+  +Q+    LP F       I    
Sbjct: 233  YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 288

Query: 308  ENELRNKAVAGLEVR----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ LR+ +  GLE R    L +         Q Y  RL+FEL++I +M F GYFLIV DF
Sbjct: 289  DDYLRHASFEGLEERLEVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 349  IKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + RD VI YV + YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP + 
Sbjct: 409  MEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 468

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +   R+   +D     + E++ KLEG+ R    HA G+VI    L+   
Sbjct: 469  GMTLD-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFS 527

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ + +         V++
Sbjct: 528  PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKRGLEPVNI 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + 
Sbjct: 588  DFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 647

Query: 659  VV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V  + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ+++GY+L  AD
Sbjct: 648  MVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGAD 707

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  FI G   NGI   +A NIF+L+ KFA YGFNKSH+AAY +
Sbjct: 708  MLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 767

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQTAW+KTH+P  F+AA +T +M N +K+    ++ R   ++I+ P VN     F V 
Sbjct: 768  VSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTVD 827

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D RI Y L AIKGVG      I E  A+  PF++L DFC RVD K++N+R LE+L+ AG
Sbjct: 828  DDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            ALD  G                +R  LL +++   + A+   ++  + H ++F       
Sbjct: 888  ALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEP 947

Query: 935  SDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               +     K        R + E+  LG Y +GHP+D Y+  +R+   +   E       
Sbjct: 948  EADVYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++V+ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1008 Q--TVAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1045


>gi|295105629|emb|CBL03173.1| DNA polymerase III catalytic subunit, DnaE type [Faecalibacterium
            prausnitzii SL3/3]
          Length = 1169

 Score = 1090 bits (2819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1056 (35%), Positives = 592/1056 (56%), Gaps = 42/1056 (3%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +++    +  F HL +H+ YSLL+GA  ++ +++++    Q AIA TD   ++  ++F +
Sbjct: 1    MSEPTANTRPFAHLHIHTEYSLLDGACRIDQLMERVKECGQTAIACTDHGVMYGCVQFYK 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AGI+PIIGC++ +  +      N+          ++LL     GY+ LI++VS  +
Sbjct: 61   AAKKAGIKPIIGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLIKMVSAGF 116

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-G 179
            +        R+    L++   EGLI L+   +G I +A      + A+   L ++ LF  
Sbjct: 117  VEG-FYSKPRVDKQLLEQYH-EGLICLSACLAGEIPQAILAGDYERAKATALWYRDLFGA 174

Query: 180  DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +  Y+ LQ H    D     Q+++L+    +P+ ATN++ +L +ED +   +L+ +    
Sbjct: 175  ENYYIELQDHGLKEDTTVLPQLIKLSRETGIPMAATNDAHYLRKEDAKMQSILLCIQTGK 234

Query: 239  VVSQKDRPRVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             +   DR     D +  K   EM  +FS +PEA  NT +IA +C+F  +     +P +  
Sbjct: 235  TIQDADRMEFQTDEFYVKTTDEMYELFSMVPEACANTAKIAEQCNFDFEFGHTKIPYYKA 294

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             +  D Q             GLE R            Q    RL +E+ V+  M ++ Y+
Sbjct: 295  PDGMDNQA----YFEKLCWDGLERRYGPDV------PQANIDRLKYEIGVVKTMGYTNYY 344

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV D+I +AK   IPVGPGRGSGAGS+ AY + ITDIDP+R++L+FERFLNP+R+SMPD
Sbjct: 345  LIVWDYINFAKSQGIPVGPGRGSGAGSIAAYCVGITDIDPIRYNLIFERFLNPERVSMPD 404

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC +RR EVI YV  KYG + VAQI+TFG++ A+ A+RDVGR + +PY QVD + K
Sbjct: 405  FDVDFCYERRQEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGIPYQQVDVVAK 464

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+P +    +  +A+   S  ++    DP V  L++ + K+EG+ RHASTHAAG+VI   
Sbjct: 465  LVPMELKMTLK-RALEVSSELKKLYDTDPQVTELIDTALKVEGMPRHASTHAAGVVITPE 523

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            P    +P+       LPVTQFNM  IE+ GL+K DFLGL+TLT+++ +   + ++  +  
Sbjct: 524  PTDYYLPL--ATNDGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIRDAETAVQKQHPEFS 581

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  + +DD +TY +L    T G+FQLESSGM+Q L G+QP  +ED+IAL+SLYRPGP+D+
Sbjct: 582  IRKLDYDDPDTYKMLGQGDTEGVFQLESSGMKQVLVGLQPQNLEDVIALISLYRPGPMDS 641

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y   ++  +KI    P +  +L  T G I+YQEQVMQI + L+G+S  +AD +RRAM
Sbjct: 642  IPTYLRNRHEPDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRAM 701

Query: 718  GKKIKEEMDKQKERFISGASK----------NGISKTIAVNIFELLAKFADYGFNKSHAA 767
             KK    M+ ++E F+ G ++          NGI + +A  I++ ++ FA Y FNKSHAA
Sbjct: 702  SKKKHAVMEAEREHFVHGCTEPGHECPGCVANGIPEQVANQIYDEMSSFASYAFNKSHAA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
             YA +++QTA++K HYP +F+AA +T  +DN +K+ ++  +  +  I+++PP VN     
Sbjct: 762  CYAYVAFQTAYLKCHYPSQFMAALLTSVLDNTDKVIEYSGECARLGIKVLPPDVNISNGG 821

Query: 828  FKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F   DN  I + L A+K VG     + +    +KP+ SL DFC R+   +LNRR +ESL+
Sbjct: 822  FTADDNGQIRFGLNAVKNVGRNLIENAVTERKEKPYTSLYDFCKRMHGSELNRRAVESLI 881

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-----SDKITLE 941
             AGA DCFG +R  ++++++ I K  +   +       ++F+   G        D   + 
Sbjct: 882  KAGAFDCFGSNRHSMVEAVEGILKSIETDSRRNLEGQLDLFSVMSGEVQQSPQEDVYEIR 941

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA----TIRGNNIRL 997
              +    +   + E+ V G Y SGHPLD Y+    ++G    ++          G  +R+
Sbjct: 942  PLAEYTPAELLQQEKEVSGLYLSGHPLDAYREKSARIGSHTIKDLTGEDAHVQDGEKVRI 1001

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               VV  +   T+  S + + +  +     E   FP
Sbjct: 1002 VCAVVKNRMMTTKSNSMMAFTSVEDLTGTMEVIVFP 1037


>gi|182624555|ref|ZP_02952338.1| DNA polymerase III, alpha subunit [Clostridium perfringens D str.
            JGS1721]
 gi|177910363|gb|EDT72744.1| DNA polymerase III, alpha subunit [Clostridium perfringens D str.
            JGS1721]
          Length = 1192

 Score = 1090 bits (2819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1078 (35%), Positives = 596/1078 (55%), Gaps = 67/1078 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6    FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +  +     +N           +VLLV   +GY+ L+++VS   +        R
Sbjct: 66   LGCEVYVVPKSRKIKSN---DEDNKTYHLVLLVKNEKGYENLMKIVSVASIEG-FYYKPR 121

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   +L+E  +EG+I L+    G + +A    +   A +    ++  F D  Y+ LQ H 
Sbjct: 122  IDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAATFYRDTFKDGFYLELQNHG 180

Query: 191  GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R  
Sbjct: 181  IEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRYP 240

Query: 250  PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D  YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F   E      E  
Sbjct: 241  SDQFYLKSPEEMWDMFDYVPEALENTLKIAEECNFDYEFHVSKLPKFPLPEG----VEPF 296

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYR----------------QRLDFELNVIARMK 352
              LR     GL  RL +    K     D                  +RL++EL VI +M 
Sbjct: 297  EYLRKTCFDGLIDRLEELRPLKEKGIYDIDKVYEIGENNDKVKEDIERLEYELGVIKQMG 356

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            +  YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFERFLNP+R
Sbjct: 357  YVDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERFLNPER 416

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD D DFC + R  VI YV  KYGH+ V+QIITFG++ A+A +RDVGRA+   Y++V
Sbjct: 417  VSMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMNYTYAEV 476

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            DR+ K IP      +  +A+  +   +     +  V  L+++S++LEGL RH+STHAAG+
Sbjct: 477  DRIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVKELIDVSRRLEGLPRHSSTHAAGV 535

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-Q 591
            VI  +PL + VP+ +    +  VTQF+M  +E+ GL+K DFLGL+TLT+++ ++D +   
Sbjct: 536  VIASQPLVEYVPLQK--NDESIVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAVDMIKYN 593

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            RGV++DL  + FDD E Y ++    T+G+FQLES+GM   ++ ++PDC+EDIIA +SLYR
Sbjct: 594  RGVEIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIAGISLYR 653

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+  I  Y + K   + +  I P ++ +L  T GV++YQEQVM+I + L+GYS+  +D
Sbjct: 654  PGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGYSMGRSD 713

Query: 712  VLRRAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADY 759
            ++RRAM KK  + M+++++ FI             G  +NGIS   A  IF+ +  FA Y
Sbjct: 714  LVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSMMDFASY 773

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSHAAAYAVI +QTA++  +YPVEFLAA +   M N +K+ ++ + A +  IQ++PP
Sbjct: 774  AFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLGIQVLPP 833

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
             +N     F V  + I + + AIK VG     +I ++      F SL DFC+++D   +N
Sbjct: 834  DINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGRFTSLMDFCNKIDLSIVN 893

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSD 936
            +R +ESL+ AG  D     R QLL   + I        K   +   ++F    E+   + 
Sbjct: 894  KRSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFGALQEESESNL 953

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------- 988
            +I        N       E+ + G Y SGHPLD Y+  L++      E+ +         
Sbjct: 954  EIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTSITIEKIIEAQKNLNEQ 1013

Query: 989  -------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                            G  + +  ++ +  +K TR  + + +    +     E   FP
Sbjct: 1014 KNVELEDLVLDSSLTDGTRVIIGGILTNVSRKVTRNNTLMAFAKVEDLTGYLECVIFP 1071


>gi|126667580|ref|ZP_01738550.1| DNA polymerase III, alpha subunit [Marinobacter sp. ELB17]
 gi|126628006|gb|EAZ98633.1| DNA polymerase III, alpha subunit [Marinobacter sp. ELB17]
          Length = 1161

 Score = 1090 bits (2819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1048 (39%), Positives = 607/1048 (57%), Gaps = 41/1048 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + +FVHL++HS +SL++G + +  ++ ++     PA+ +T+ +N+FS + F + A  AG+
Sbjct: 3    AQTFVHLRIHSEHSLVDGLVRVKPLIKRVVELGMPAVGLTEQSNMFSLVRFYKAALGAGV 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG  L  +  D  +          +     LL S  +GY  L E+VS  Y   Q   
Sbjct: 63   KPIIGADLWFENPDEPE----------SPFRTTLLASNNDGYLNLTEIVSLGYTEGQRFG 112

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL E  ++GLIML+GG  G + +A   +  ++A +R   ++ L+    Y+ LQ
Sbjct: 113  KPIIKREWL-EARSQGLIMLSGGKMGDVAKAMLSDKPKLARERACYWRDLYPGSFYLELQ 171

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R  D       V LA    LP+VATN+  F+  ED+EAH+  + +  S  +    R 
Sbjct: 172  RTGRAGDEDCLHLNVALAAELGLPVVATNDVHFIYAEDFEAHEARVCIGESRTLDDPRRD 231

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  +   +L++  EM+ +F+D+PEA+ENT+ IARRCS  +++    LP +   E   +  
Sbjct: 232  RRFSDQQHLRSAEEMIELFADIPEAVENTLAIARRCSVTVRMGEYFLPNYPVPEGMTMN- 290

Query: 306  EEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               +  R  +  GLE RL     +         Q Y  RL FEL++I +M F GYFLIV 
Sbjct: 291  ---DYFRRVSEEGLEDRLAKTLPKDDPDYDSKRQAYYDRLKFELDIIIQMGFPGYFLIVM 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK N +PVGPGRGSGAGS+ AYA  ITD+DPL++ LLFERFLNP+R+SMPDFD+D
Sbjct: 348  DFIKWAKNNGVPVGPGRGSGAGSLVAYAQLITDLDPLQYDLLFERFLNPERVSMPDFDVD 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RD VI YV  KYG E V+QIITFG++ AKA +RDV R     Y   D+L K+IP 
Sbjct: 408  FCMEGRDRVIAYVAEKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPF 467

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +  +A+  +   +E    D     + E++ KLEG+ R+A  HA G+VI    ++ 
Sbjct: 468  EVGMTL-AKAVEQEPSLKEFLAQDEEAQEIWEMAIKLEGVCRNAGKHAGGVVIAPTKITD 526

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K      
Sbjct: 527  FSPLYCDDDGGSLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWALKMINPRREKRGLKPL 586

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+S IP DD  ++ +L    T  +FQLES GM+  +  +QPD +ED+IALV+L+RPGP+ 
Sbjct: 587  DISEIPLDDPASFVMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPGPLQ 646

Query: 657  NIVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + +RK+GK+ +   HP      + P+L+ T GVI+YQEQVMQIAQ++ GYSL  
Sbjct: 647  SGMVDDFIDRKHGKQPMSFPHPDYQYEGLKPVLEPTYGVILYQEQVMQIAQVMGGYSLGN 706

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQK+ F+ G + N I K +A NIF+L+ KFA YGFNKSH+AAY
Sbjct: 707  ADMLRRAMGKKKPEEMAKQKQFFLDGCAGNNIDKALAENIFDLVEKFAGYGFNKSHSAAY 766

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HY  EF+AA +T +M N +K+    ++ R   + ++ P V+T    F 
Sbjct: 767  ALVSYQTLWLKAHYTAEFMAAVLTADMQNTDKVVTLVEECRSLKLDLVLPDVSTSEYAFT 826

Query: 830  VGDNR-IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
              D+  + Y L AIKG+G      I+ A   + PF  L DFC RVD KK+N+R LE+++ 
Sbjct: 827  ANDDGQVVYGLGAIKGLGEGPIDSIVTARKENGPFTDLFDFCRRVDLKKVNKRALEAMIR 886

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944
            AGA+D  G  R QL+ S++     A    +N      ++F     T +D      +    
Sbjct: 887  AGAMDKLGAGRAQLMASIEKAILQAGQQSRNEAAGMVDMFGDMLETAADVDAYTDVADIR 946

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                  R + E+  LG Y +GHP D Y+  +R+       +       +  R+A +VV++
Sbjct: 947  EWPEKKRLKGEKDTLGLYLTGHPFDEYEREVRRFVRSSIADL--KPNKSPQRVAGLVVAQ 1004

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  KTR GS + ++T  + +   EA  F
Sbjct: 1005 RTMKTRTGSTMCFITLDDRSGRIEATLF 1032


>gi|90413544|ref|ZP_01221535.1| DNA polymerase III subunit alpha [Photobacterium profundum 3TCK]
 gi|90325476|gb|EAS41959.1| DNA polymerase III subunit alpha [Photobacterium profundum 3TCK]
          Length = 1158

 Score = 1090 bits (2818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1044 (38%), Positives = 612/1044 (58%), Gaps = 38/1044 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL  HS +S+++G   ++ ++ K+A    PA+A+TD  NL   ++F   A  AG++
Sbjct: 4    PRFIHLHTHSDFSMVDGLSKVSPLVKKVAEIGMPAMALTDFTNLCGLVKFYFAAHGAGMK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +  ++              +  + +L +  +GYQ L  L+S+ YL    +  
Sbjct: 64   PIIGADFKVHSEE----------LDNELADLTILAADNDGYQNLTMLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +  ++GLI+L+G   G + +A    +  +  + +  ++  F D  Y+ L R
Sbjct: 114  PVIDKEWLAQY-SKGLILLSG-RCGDVGKALLKGNKSLVNRCVEFYQTHFEDSFYLELVR 171

Query: 189  HRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D        V+LA   +LP+VATN+  F+S E ++AH++ +++     +   +RP+
Sbjct: 172  TGRPDEDAFIHFAVELAANEDLPVVATNDVRFISAEQFDAHEIRVSIHDGYTIVDPNRPK 231

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL+   EM  +FSD+PEAL N+VEIA+RC+  +++    LP F   +       
Sbjct: 232  LYSPQQYLRTEEEMCELFSDIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGDL-----S 286

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 287  TEDFLVVKSREGLERRLAFLFPDEAVRVEKRPEYDERLEIELEVINQMGFPGYFLIVMEF 346

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFDIDFC
Sbjct: 347  IQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLEFDLLFERFLNPERVSMPDFDIDFC 406

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDRL K+IP +P
Sbjct: 407  MDKRDLVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKMIPAEP 466

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  +A  AD  V  L+++ + LEG+ R+A  HA G+VI    ++   
Sbjct: 467  GMTL-AKAFEAEPQLGDAYNADEEVKALIDMCRILEGVTRNAGKHAGGVVISPTTITDFS 525

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        +++
Sbjct: 526  PLYCDAEGANPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRREAEGKEPINI 585

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP  D +++ +L    +  +FQLES GM+  ++ +QPD  ED+IALV+L+RPGP+ + 
Sbjct: 586  ASIPMADKKSFDMLQRSESTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSG 645

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E++        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 646  MVDNFIDRKHGREEVSYPDATWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGAD 705

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 706  MLRRAMGKKKPEEMAKQRTTFEEGAVNNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 765

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQT ++K HYP EF+AA MT +MDN +KI     +  +  I ++PP VN     F V 
Sbjct: 766  VSYQTLYLKAHYPAEFMAAVMTADMDNTDKIIGLVDECLRMKIPLLPPDVNKGLYRFNVD 825

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                I Y + A+KGVG     +++EA      F  L DFC+R+D+KK+N+RVLE L+ +G
Sbjct: 826  EQGAIVYGIGAVKGVGEGPIENLIEAREKGGHFKDLFDFCARIDTKKVNKRVLEKLIKSG 885

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A+D  G +R  ++ +L++  K A    +       ++F          +           
Sbjct: 886  AMDRLGPNRATMMATLNDAIKAAGQHHQAEAFGQADMFGVLTAAPEEVEQAYANIPEWPD 945

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             +  E E+  LG Y +GHP++ Y   L+       +++  T R     +A +V++ +   
Sbjct: 946  KIWLEGERETLGLYLTGHPINAYISELKHYTTWRLKDANPTGRDKVASVAGLVIAARVMT 1005

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G+RIG +T  + +   E   F
Sbjct: 1006 TKRGTRIGLMTLDDRSGRMEVMLF 1029


>gi|292670795|ref|ZP_06604221.1| DNA-directed DNA polymerase III alpha subunit [Selenomonas noxia ATCC
            43541]
 gi|292647416|gb|EFF65388.1| DNA-directed DNA polymerase III alpha subunit [Selenomonas noxia ATCC
            43541]
          Length = 1130

 Score = 1090 bits (2818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1034 (37%), Positives = 603/1034 (58%), Gaps = 30/1034 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+GA  +  ++ +       ++A+TD   ++ A+ F ++A A GI P
Sbjct: 2    AFAHLHVHTEYSLLDGASRIKELVRRTKELGMDSVAMTDHGVMYGAVRFYKEAKAQGIHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ +  +   +   + +        ++LL     GY+ L++LVS   +        
Sbjct: 62   VIGCEVYLAPRMRQE---RAEVDGQRYYHLILLAENELGYRNLVQLVSLANIEG-YYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            RI    L+    EG+I L+   +G I +A    + + A++ +  +  +FG    ++ +Q 
Sbjct: 118  RIDKELLRRYH-EGIIALSACVAGEIPQAILRGNIEQADEIVREYIDIFGHANFFLEIQD 176

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +       +  LA  H + LVATN+  ++  +D E HD+L+ V     ++  DR R
Sbjct: 177  HGLPEEKTVNHALRDLAEKHGVRLVATNDVHYVHADDSEFHDILLCVQTGRTINDPDRMR 236

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + PD+YLK+  EM  +F+D P ALENTV+IA RC          LP +   +     + 
Sbjct: 237  FSGPDYYLKSEQEMAELFADYPGALENTVKIAERCQVDFTFGELQLPYYPMPKG---YES 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            ++  LR      L +R             + RQRLD+EL VI  M ++ YFLIV DFI +
Sbjct: 294  DDVYLRALCEERLPLRYPDA-------DDEIRQRLDYELGVIHNMGYASYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+++ + VGPGRGS AGS+ AY L IT+IDPL+++LLFERFLNP+R+SMPD DIDF    
Sbjct: 347  AREHGVAVGPGRGSAAGSIVAYLLGITNIDPLQYALLFERFLNPERVSMPDIDIDFDDIN 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R  VI YV+ +YG + VAQI TFG++ AK A+RDV R L+MP+S+V  + KLIP +    
Sbjct: 407  RGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVARVLEMPFSEVSTITKLIPAELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ + + FR+    D +  R++++++K+EGL R+ S HAAG+VI   PL+  VP++
Sbjct: 467  LD-RALQESTDFRKRYEEDEAARRVIDLARKIEGLPRNTSIHAAGVVIAKSPLADQVPVW 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
              V     VT+F+   +E  GL+K DFLGL+TLT++  +++ + +  GV++D+  IP +D
Sbjct: 526  --VSEGTLVTEFDKDDVEALGLLKMDFLGLRTLTIIADTVNHVRRSHGVELDIDQIPLED 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
             +T  +L    T  +FQ+ES+GM   ++ +QP    D+I  V+LYRPGP+ + +V  + +
Sbjct: 584  AQTAKMLCNGDTGAVFQMESAGMTNLVKDLQPKGFVDLIPTVALYRPGPLGSGMVTDFID 643

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
              +GK+++V +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK  E
Sbjct: 644  GLHGKKEVVYMHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADILRRAMGKKKHE 703

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  QKE F+ G  KNGI  ++A  IF+LL  FADYGFNKSH+AAY ++++QTA++K HY
Sbjct: 704  LLMAQKEIFLQGCEKNGIEASLANRIFDLLTHFADYGFNKSHSAAYGLLAWQTAYLKAHY 763

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+A  +T  MD  +KI  + Q  RQ  I+I+PP +N+    F +    I + LAA++
Sbjct: 764  PVEFMAGVLTSIMDKTDKIPVYIQLCRQMKIKILPPDINSSVATFGIEGGAIRFGLAAVR 823

Query: 844  GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      +    A+   F SL DFC+RVD + LN+R +ESL+  GA D  G  R QLL
Sbjct: 824  NVGENAIASMERVRAEGGKFRSLVDFCARVDMRTLNKRAIESLIKCGAFDSIGMERNQLL 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL-EKFSVENSSVRFENEQRVLGF 961
             +LD   + A   +++  +    +F  +      +I +        +  R   E+   GF
Sbjct: 884  AALDAAMQDAARRQRDLISGQIGLFGQDTMEEVQQIQISSDVPPSTTRERLTWEKEATGF 943

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y +GHPLD Y   L    +    +   TIR +   +R+  ++ + ++  T+KG  + +  
Sbjct: 944  YITGHPLDDYSDTLA--CLLPIGDIPGTIRKDRQLVRIGGILTNTKRFTTKKGDTMLFAE 1001

Query: 1020 FSEPAKEYEANFFP 1033
              +     E   FP
Sbjct: 1002 LEDFTGRIEVTIFP 1015


>gi|238897448|ref|YP_002923125.1| DNA polymerase III, alpha subunit [Candidatus Hamiltonella defensa
            5AT (Acyrthosiphon pisum)]
 gi|229465203|gb|ACQ66977.1| DNA polymerase III, alpha subunit [Candidatus Hamiltonella defensa
            5AT (Acyrthosiphon pisum)]
          Length = 1160

 Score = 1090 bits (2818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1045 (40%), Positives = 607/1045 (58%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL VHS YS+++G   +  ++ K AA   PA+A+TD +N    ++F   A   GI+
Sbjct: 4    PRFIHLSVHSDYSMIDGLTKIKPLVQKAAALGMPALALTDFSNFCGLVKFYGAAHKVGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q          + LL    EGY  +  L+S  Y    G   
Sbjct: 64   PIIGADFYV----------QNPALENNFARLTLLARNQEGYHNITLLISAAYQRGYGSLG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   EGLI+L+G   G + +     +    ++ L  ++  F D  Y+ L R
Sbjct: 114  PVIDRHWLIK-HKEGLILLSGAKMGDLGQFILRENQSQIDQCLHFYQTHFPDNYYIELTR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D        + +A  H +P+VATN+  F+   D++AH++ +A+     ++   RP+
Sbjct: 173  TGRADEESYLHSAINIAEKHGIPVVATNHVRFMDPSDFDAHEIRVAINAGFTLADPKRPQ 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +FSD+PEAL N+VEIA+RC+  L++     P++   +       
Sbjct: 233  NYSPQQFMRSEQDMCELFSDIPEALTNSVEIAKRCNLNLRLGEYFFPKYPTGKM-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  ++  GL  RL         +    + Y QRL  EL VI  M F GYFLIV +F
Sbjct: 288  TEDFLIARSQEGLGKRLEFLFSDPEIRKQKREAYDQRLALELQVINEMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK N+IPVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+S+PDFD+DFC
Sbjct: 348  IQWAKDNHIPVGPGRGSGAGSLVAYALQITDIDPLEFDLLFERFLNPERISLPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V + YG E V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLIP D 
Sbjct: 408  MEKRDAVIEHVADMYGRESVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRIAKLIPLDL 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +    +A  AD  V  LL++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFVAEPELTKAYEADEEVRSLLDMARKLEGVTRNAGKHAGGVVIAPTKMTDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            P+Y D +   PVTQF+   IE  GL+KFDFLGL+TLT++ K+++ + QR +       D+
Sbjct: 527  PLYCDSQGQNPVTQFDKNDIEYVGLVKFDFLGLRTLTVIHKAVEMINQRIITQGAQPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            SLIP +D +++ +L    T  IFQLES GM+  ++ ++PDC EDIIALV+L+RPGP+ + 
Sbjct: 587  SLIPLNDPKSFEVLQRSETTAIFQLESKGMKDLIKRLKPDCFEDIIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK G+E I        HP + P+L+ T G+I+YQEQVMQIAQ+LSGYSL EAD
Sbjct: 647  MVDNFIDRKQGRETISYPDIEWQHPCLQPVLEPTYGIILYQEQVMQIAQVLSGYSLGEAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F +GA + GI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  ILRRAMGKKDPVEMAKQRSIFENGAKEKGIDGQLAIKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTHYP EF+AA MT +MDN +KI     +  +  + ++PP +N+    F V 
Sbjct: 767  LSYQTLWLKTHYPAEFMAAVMTADMDNTDKIVGLVDECARMGLTMLPPDINSGFYHFHVN 826

Query: 832  -DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
               +I Y + AIKGVG      I+EA      F  L DFC+R   KKLNRR+LE L+F+G
Sbjct: 827  AQGKIVYGMGAIKGVGEGAIESILEARRQGGEFKDLFDFCARTAKKKLNRRILEKLIFSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            ALD  G  R  L+ +L N  K A+   K       ++F    +     + +  +      
Sbjct: 887  ALDRLGPHRAALMHALQNAIKAAEQHAKAELTGQADMFGVLTQDPKKIEQSYAQVPPWQQ 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                + E+  LG Y +GHP+  Y   +R   G    ++   T RG N+ +A  VVS +  
Sbjct: 947  QTVLDGERETLGLYLTGHPITQYLKEIRHYVGSSRLQDLSPTPRGKNVTVAGFVVSAKVM 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG     + +   +   F
Sbjct: 1007 TTKRGARIGLCKLDDRSAHLDIMLF 1031


>gi|145638463|ref|ZP_01794073.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittII]
 gi|145272792|gb|EDK12699.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittII]
 gi|309751597|gb|ADO81581.1| DNA polymerase III alpha subunit [Haemophilus influenzae R2866]
          Length = 1159

 Score = 1090 bits (2818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1048 (39%), Positives = 604/1048 (57%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG            +  +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGA----------DVKVKSTLCGDEYFYLTLLAKNNEGYKNITLLLSKAYQRGY 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   EG+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 111  N-DLPYIDQDWLIE-HREGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R  Q  ++LA +H LPLVATN+ +FL  +D+EAH++ +A+     +   
Sbjct: 169  ALTRTGKPDEERYIQAALKLAKSHGLPLVATNDVMFLKSDDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP   T   Y ++  EM  +F+D+P ALENT+ IA+RCS  L++    LP+F   +   
Sbjct: 229  KRPKYYTSQQYFRSEDEMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL-- 286

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +      Y +RL  EL+VI +M F GYFLI
Sbjct: 287  ---STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PLDPGMTL-AKAFEAEPQLQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFSPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRAETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSVFKEGAVKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINVGKHH 822

Query: 828  FKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +     Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  K +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALKASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A ++VS 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVSS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAITKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|320155607|ref|YP_004187986.1| DNA polymerase III subunit alpha [Vibrio vulnificus MO6-24/O]
 gi|319930919|gb|ADV85783.1| DNA polymerase III alpha subunit [Vibrio vulnificus MO6-24/O]
          Length = 1143

 Score = 1090 bits (2818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1031 (40%), Positives = 604/1031 (58%), Gaps = 37/1031 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G   +  ++ ++AA   PA+A+TD  NL   ++F   A   GI+PIIG    +    
Sbjct: 1    MVDGINKVPALVKQVAALGMPAMALTDFTNLCGLVKFYGAAHGNGIKPIIGADFKM---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GY+ L  L+S+ YL    +    I   WL E+ +
Sbjct: 57   ------QSPEFGDELTQLTVLAADNTGYKNLTLLISKAYLRGHVQHQPVIDKEWLIEL-S 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+G  +G I +A    + ++ E  +  +++ F DR Y+ L R    D        
Sbjct: 110  EGLIILSGARNGEIGKALLKGNQKLVESCVAFYQQHFADRFYLELIRTGRSDEETYLHFA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            ++LA  ++LP+VATN  +F+ +E ++AH++ +A+     +    RP   +P  YL+   E
Sbjct: 170  IELAEQYDLPVVATNEVVFIGQELFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEALEN+VEIA+RC+  +++    LP F  +        E   L  K+  GL
Sbjct: 230  MCELFADIPEALENSVEIAKRCNVTVRLWEYFLPAFPTE-----GMAETEFLVMKSKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGP
Sbjct: 285  EERLEFLFPDPEIRAQRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLE-KAFKAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
               E   AD  V  L+++ + LEG  R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  ALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGNFPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V +  IP DD  ++ +
Sbjct: 524  QFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKAPVRIESIPLDDPASFRI 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  AISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP
Sbjct: 704  MAKQRATFEEGAVKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  + ++PP +N+    F V  +  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVDENGAIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L DFC+R+D KK+N+RV+E L++AGALD  G  R  L+
Sbjct: 824  GVGEGPIDAILEARTKGGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SLD+  K A    +       ++F          +    +       V  E E+  LG 
Sbjct: 884  ASLDDAVKAASQHHQAEAFGQADMFGVLTDAPEEVEHKYIQVEPWPEKVWLEGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y +GHP++ Y   L K      +++  T R  ++ LA +V++ +   T++G+RIG +T  
Sbjct: 944  YLTGHPVNAYLTELNKYTSCRLKDATPTRRDQSLTLAGLVIAARVMTTKRGTRIGIMTLD 1003

Query: 1022 EPAKEYEANFF 1032
            + +   E   F
Sbjct: 1004 DRSGRMEVMLF 1014


>gi|291326493|ref|ZP_06124738.2| DNA polymerase III, alpha subunit [Providencia rettgeri DSM 1131]
 gi|291314103|gb|EFE54556.1| DNA polymerase III, alpha subunit [Providencia rettgeri DSM 1131]
          Length = 1144

 Score = 1089 bits (2817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1032 (39%), Positives = 600/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K+A+   PA AITD  NL   + F   A  AGI+PIIG    +    
Sbjct: 1    MIDGLAKTGPLVKKVASMGMPAFAITDFTNLCGLVRFYGAAHGAGIKPIIGADFYV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  + +     +  + +L    EGYQ L  L+S  Y    G     I   WL +   
Sbjct: 57   ------ESELLGDEISHLTVLARNNEGYQNLTLLISEAYQKGYGAVGPTIKREWLAK-HK 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            +GLI+L+GG  G + +     +  + ++ L  ++  F D  Y+ L R    D        
Sbjct: 110  DGLILLSGGRKGDVGQFLLRGNQSLVDECLAFYETHFPDSYYLELVRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     ++   RP   +P  YL++  E
Sbjct: 170  VELATKKGLPVVATNDVCFIESSDFDAHEIRVAIHDGFTLADPKRPKNYSPQQYLRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEALEN+VEIA+RC+  +++    LP+F   +      + E+ L  ++  GL
Sbjct: 230  MCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPTGDM-----KTEDFLVMRSKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y +RLD ELNVI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLEFLFPDEKIRAERRPEYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        VD++ IP  D +++ +
Sbjct: 524  QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKNLEPVDIAAIPLHDQKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V D     Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  + D C+RVD KK+NRRV+E L+ AGA D  G  R  L+
Sbjct: 824  GVGEGPIEAIVEARQQGGIFKEIFDLCARVDIKKINRRVMEKLIMAGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL++  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  SSLEDALKAADQHAKAEAIGQADMFGVLAEAPEQVESSYASVPKWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP+  Y   + +       ++   T RG    +  +V+S +   T++G+RIG  T 
Sbjct: 944  YLTGHPITRYLSEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   +   F
Sbjct: 1004 DDRSGRLDIMLF 1015


>gi|197105245|ref|YP_002130622.1| DNA polymerase III, alpha subunit [Phenylobacterium zucineum HLK1]
 gi|196478665|gb|ACG78193.1| DNA polymerase III, alpha subunit [Phenylobacterium zucineum HLK1]
          Length = 1148

 Score = 1089 bits (2817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 492/1033 (47%), Positives = 689/1033 (66%), Gaps = 19/1033 (1%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
                 FVHL+V S+YSLLEGA+  + I D   A   PA+A+ D  NLF ALEFS     +
Sbjct: 8    TADAGFVHLRVRSAYSLLEGAIKADKIGDLAKAWGMPAVALADRANLFGALEFSVATKGS 67

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+QPIIGC L +       + ++    +   P+I+LL  + +GY  L EL S  YL    
Sbjct: 68   GVQPIIGCALPVS-----GIGDRPPERWAKTPTIMLLAQSEQGYLNLCELSSAAYLDVDA 122

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             +   +  + + E  +EGLI+L+GG  GP+D  F     +     L   K+ FG R YV 
Sbjct: 123  SEEPHVPWTKVVE-RSEGLILLSGGPDGPVDHLFAAGKVKEGRAALAEMKRAFGSRFYVE 181

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQRH    +   E ++V  AY  ++PLVATN+  F + + ++AHD L+ +A  + V Q +
Sbjct: 182  LQRHGLPAEAAAEGELVAFAYDEDVPLVATNDVYFKNPQMHQAHDALLCIADGSFVGQDE 241

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R RVT +H+ K+ ++M ++F+DLPEA +NT++IARRC+F++    P+LP F      D  
Sbjct: 242  RRRVTAEHWFKSPADMRALFADLPEACDNTLDIARRCAFMVHKRDPLLPSFT-----DEG 296

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + E  EL ++A  GL  R+A G  A  + A++Y  RL+ E+ VI +M F GYFLIV+DFI
Sbjct: 297  RSEAEELAHQAREGLRARMAAG-QANAFPAEEYEARLEREIQVITQMGFPGYFLIVSDFI 355

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK   IPVGPGRGSGAGS+ AYALTIT++DPLR+ LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 356  KWAKARGIPVGPGRGSGAGSLVAYALTITNLDPLRYGLLFERFLNPERVSMPDFDIDFCQ 415

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI YVQ +YG ++VAQIITFG+LQA+A LRDVGR +Q+P  QVDRL K++P +PA
Sbjct: 416  ERREEVINYVQQRYGRDKVAQIITFGTLQARAVLRDVGRVMQLPLGQVDRLAKMVPANPA 475

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +PV+L QA+  + R +E    D +V RLL+++ +LEGLYR+ASTHAAG+VIGDRPL+QL 
Sbjct: 476  NPVTLAQALDIEPRLKEEAARDEAVARLLDVALQLEGLYRNASTHAAGVVIGDRPLTQLT 535

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+YRD RS+LP TQFNMKW+E AGL+KFDFLGLKTLT++ +++  L +RG  VD++ +P 
Sbjct: 536  PLYRDPRSELPATQFNMKWVESAGLVKFDFLGLKTLTVIDRAVKHLEKRGAAVDMNALPL 595

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  TY L++   T+G+FQLE  GMR  L  ++P  IED+ A+VSLYRPGP+DNI  + +
Sbjct: 596  DDGPTYELMSNAQTIGVFQLEGQGMRDTLRQLRPSSIEDVTAIVSLYRPGPMDNIPAFVD 655

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             K G++ I ++HPL++ +LKET G+I+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKK KE
Sbjct: 656  CKFGRKPIDTLHPLLEGVLKETYGIIVYQEQVMQIAQILAGYSLGEADLLRRAMGKKKKE 715

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM+ Q+ RF+SGA   G+    +  IF+L+ KFA YGFNKSHAAAYAV+SYQTAW+K + 
Sbjct: 716  EMEAQRARFVSGAEAKGVPAAQSGAIFDLVDKFAGYGFNKSHAAAYAVVSYQTAWLKANA 775

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF AASM+L++ N +K+  F QDA++F ++I PP VN    DF+V +  + Y+L AI+
Sbjct: 776  PVEFFAASMSLDIANTDKLSVFYQDAKRFGVKIRPPCVNRSGADFEVENGEVLYALGAIR 835

Query: 844  GVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG     H+++      PF  + DF  R+D K++N+R  E+L  AGA D    +R +LL
Sbjct: 836  NVGLQAMEHVVQVRREGGPFRDIFDFVERIDPKQVNKRTFETLARAGAFDAIHPNRAELL 895

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             S D +  + Q +  +R     ++F  +  +   +  L +      + R + E   +GFY
Sbjct: 896  ASADTLVGHGQALAADRAEGKVSLFGDDL-SGGHRPRLTRAEPWTPTERLDEELAAVGFY 954

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVA-TIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTF 1020
             SGHPLD     LR+       +++A  + G    R+A ++  KQ++ +R G +  +VTF
Sbjct: 955  LSGHPLDDMVEALRRKRTDLLTDAIARAVAGAEALRMAGVIRRKQERPSRTGEKFAFVTF 1014

Query: 1021 SEPAKEYEANFFP 1033
            S+P  EYE   FP
Sbjct: 1015 SDPTGEYEV-LFP 1026


>gi|254505207|ref|ZP_05117358.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia
            alexandrii DFL-11]
 gi|222441278|gb|EEE47957.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia
            alexandrii DFL-11]
          Length = 1138

 Score = 1089 bits (2817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 544/1024 (53%), Positives = 713/1024 (69%), Gaps = 12/1024 (1%)

Query: 15   QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +VHS+ SLLEGAL +  +LD   AD QPA+AI DTNNLF A EFS KA  AGIQPI  CQ
Sbjct: 2    RVHSALSLLEGALPIKRLLDLAKADDQPALAIADTNNLFGAQEFSSKAWGAGIQPITACQ 61

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            L +   D L   + G+   P +  +VL+  T  GY  L+EL SR +L  +      + +S
Sbjct: 62   LSVFFDDGL---DSGRRGEPALADLVLIAMTETGYGNLMELTSRAFLDTETGLRPHVSIS 118

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-D 193
            +L +   + +I+LTGGS G I          +A+ RL T    F  R YV +QRH    +
Sbjct: 119  YLLQKA-QDVIVLTGGSLGAIGAPLLAGRKDLAKSRLKTLDDGFAGRCYVEIQRHGMESE 177

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            R  E   + LAY   LPLVATN + F + EDYEAHD L+ ++   V+ + DR R+TP+HY
Sbjct: 178  RKTEEAFLDLAYEMGLPLVATNEAFFPAREDYEAHDALICISEGRVLIESDRRRLTPEHY 237

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE--L 311
             K R+EM  +F+DLPEAL +T+EIA+RCSF     APILPRF   + D  + E      L
Sbjct: 238  FKTRAEMCVLFADLPEALASTIEIAQRCSFRPMTRAPILPRFAGADADPEEAERAETEEL 297

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            + +A  GL+ RL    +A G   +DY  RLD+E  +I RMKF GYFLIVADFI+WAK ++
Sbjct: 298  KRQAREGLQARLDAHGLAPGLEEKDYWDRLDYETGIIERMKFPGYFLIVADFIKWAKNHD 357

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            IPVGPGRGSGAGS+ A++LTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQ RR+EVI
Sbjct: 358  IPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFERFLNPERVSMPDFDIDFCQSRREEVI 417

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-Q 490
            RYVQ KYG ++VAQIITFGSLQA+A LRDVGR LQMPY QVDRLCKL+P +PA+PV+L Q
Sbjct: 418  RYVQEKYGRQQVAQIITFGSLQARAVLRDVGRVLQMPYGQVDRLCKLVPANPANPVTLGQ 477

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            AI D+ R REA   +  V+RLL ++QKLEGLYRHASTHAAG+VIGDRPL QLVP+YRD R
Sbjct: 478  AIEDEPRLREAAREEEIVERLLGMAQKLEGLYRHASTHAAGVVIGDRPLEQLVPLYRDPR 537

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
            SD+PV QFNMK +E AGL+KFDFLGLKTLT++  ++  + +RG+ VD++ +P DD ++Y 
Sbjct: 538  SDMPVAQFNMKMVEDAGLVKFDFLGLKTLTVIDTAVKLIERRGINVDVASLPIDDRKSYE 597

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LLT   T G+FQLES GMR+A+ GM+PD  EDIIALV+LYRPGP++NI VYN  K+G+++
Sbjct: 598  LLTRGETFGVFQLESQGMRRAVAGMKPDRFEDIIALVALYRPGPMENIPVYNAVKHGEQE 657

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
               +HPL++P+L ET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI  EM+ Q+ 
Sbjct: 658  PDCLHPLLEPILMETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIAAEMEVQRA 717

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            RF+ GA + GI+KT A  IF+L+AKFA+YGFNKSHAAAYA++SY TAW+K ++ VEF+AA
Sbjct: 718  RFVDGAVERGINKTQAGTIFDLVAKFANYGFNKSHAAAYALVSYHTAWLKANHSVEFMAA 777

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
            SMTL+M N EK+  F Q+AR+  I+++PPS+N   V F V D +I Y++ A+KGVG    
Sbjct: 778  SMTLDMGNTEKLGDFRQEARRMGIEVVPPSINRSQVYFDVSDGKILYAMGAVKGVGEQAV 837

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
             HI+E     PF SL DF  R+  K LN+R LE+LV AGA D    +R ++ + LD I  
Sbjct: 838  EHIVEVRGQTPFQSLGDFARRISPKALNKRTLENLVAAGAFDELEPNRARVFEGLDRIIG 897

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
             AQ  E+N+T   + +F        + + L++     S  + + E   +GFY S HP+D 
Sbjct: 898  LAQRTEENKTLGQDELFGGSDS--EEPLQLDEVHGWTSEEKLQREHSAIGFYLSAHPIDE 955

Query: 971  YKPILRKMGIKGYEESV-ATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            Y  +L KM  + + +   A  +G +  RLA  V+S Q++KT+ G+R+G    S+   +YE
Sbjct: 956  YASVLEKMRAQPWAQFADAVKKGASAGRLAGTVISMQERKTKSGTRMGIARLSDATGQYE 1015

Query: 1029 ANFF 1032
            A  F
Sbjct: 1016 ALLF 1019


>gi|261868771|ref|YP_003256693.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans D11S-1]
 gi|261414103|gb|ACX83474.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans D11S-1]
          Length = 1158

 Score = 1089 bits (2817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1046 (39%), Positives = 604/1046 (57%), Gaps = 38/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHLQVHS +S+++G   +  ++     +   A+ +TD  N    + F  +A ++G
Sbjct: 2    SQPRFVHLQVHSDFSMIDGIAKVKPLVKACVGNGMVAVGLTDFTNFCGLVRFYGEALSSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PII             +  Q          + LL    EGY+ +  L+S+ Y      
Sbjct: 62   VKPII----------GTDVLVQSALCGDEKFRLTLLAKNNEGYKNITLLLSKAY-ERGYA 110

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E    G+I+L+GG +G + +    ++    +  +  +++ F D  Y+ L
Sbjct: 111  DWPYIDQQWLVE-HRAGVIVLSGGVNGDVGKKLLRSNPDELKSAVDFYREFFPDHFYLTL 169

Query: 187  QRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R     ++LA   +LP+VATN+  FL  ED+EAH++ +A+     +    R
Sbjct: 170  TRTGRPDEERYIKAALELAEQQQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKR 229

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  T   Y ++  EM  +F+D+P ALENTV IA+RC+  +++    LP+F   +     
Sbjct: 230  PKLYTSQQYFRSEQEMCDLFADVPSALENTVLIAQRCNVTIRLGEYFLPQFPTGDL---- 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  -TTEDYLVKRAKDGLEERLKVLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFLIVM 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 345  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D RD VI +V   YGH  V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 405  FCMDGRDRVIDHVAEMYGHGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPP 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + + +E   AD  V  ++++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 465  DPGMTL-AKAFEAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R  K      
Sbjct: 524  FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKLLV 583

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+S IP DD +++ +L    T  +FQLES GM+  ++ ++PDC EDIIALV+L+RPGP+ 
Sbjct: 584  DISAIPLDDQQSFDVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQ 643

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 644  SGMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGG 703

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 704  ADLLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGGLAMKIFDLVEKFAGYGFNKSHSAAY 763

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT EMDN +KI     +  +  ++++PP +NT    F 
Sbjct: 764  ALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECMRMGLKVVPPDINTGKHHFS 823

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V +N    Y + AIKGVG      ++EA   D  F +L D C+RVD KK+NRR  ESL+ 
Sbjct: 824  VNENGEIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIK 883

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946
            +GA D  G  R  L Q+L++  + +    K+      ++F     T  + + +    +  
Sbjct: 884  SGAFDKLGPHRAALQQNLEDALRASDQHAKDEALGQVDMFGVLTETNEEVENSYANIAPW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                  + E+  LG Y S HP+  Y   L        +E V   RG     + +V++ + 
Sbjct: 944  TEKTILDGERETLGLYLSSHPVTRYLKELAHYSPVRLKELVPNYRGQMSTASGLVINTRV 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+KG+ IG  T  + +   +   F
Sbjct: 1004 AVTKKGNHIGIATIDDRSGRLDLTLF 1029


>gi|222529253|ref|YP_002573135.1| DNA polymerase III DnaE [Caldicellulosiruptor bescii DSM 6725]
 gi|222456100|gb|ACM60362.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor bescii DSM
            6725]
          Length = 1139

 Score = 1089 bits (2817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1033 (37%), Positives = 602/1033 (58%), Gaps = 30/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA  ++ + +++      A+ ITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHLHTEYSLLDGACRIDRLFERVKDLNMNAVGITDHGAMYGVIDFYKTAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +               +  +VLL    +GY+ L ++VS  ++        
Sbjct: 62   IIGCEVYLAPRTRFDKEPNIDND---IHHLVLLAMDNDGYRNLSKIVSIGFVEG-FYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L +  ++GLI LT   +G I +       +     +  +K++FG+  Y  LQ H
Sbjct: 118  RVDREVLSKY-SKGLIALTSCLAGEIPKLILREQKEKLYDAINFYKEVFGENFYFELQYH 176

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +  +++++L+  +++PLVATN+  +L  ED   HD+L+ +     +S  +R   
Sbjct: 177  YIDEQRFVNNELMRLSKKYQIPLVATNDVHYLRREDRNLHDILLCIQTGKTISDSNRMEF 236

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +F  +PEAL+NT+EIA +C+   +     LP+F   E    + + 
Sbjct: 237  PTDEFYLKSPEEMQQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEG---KSDA 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+  A+ G + R      A          RL  EL VI  M F  YFLIV DFI +A
Sbjct: 294  FEYLKELALEGFKKRYKNDDKAAY-------DRLMMELQVIKDMGFVEYFLIVQDFINYA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDFC  RR
Sbjct: 347  KQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFCYQRR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP  P   +
Sbjct: 407  QEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGVPYSQVDEIAKMIPFSPGMTI 466

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   ++    + +V R+++ ++ LEG+ RHAS HAAG+VI   P++ LVP+ R
Sbjct: 467  D-KALEINHDLKKIYEQNDTVRRIIDTARNLEGMPRHASVHAAGVVISSCPITDLVPLAR 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL  I ++D 
Sbjct: 526  --TDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDRIDYNDK 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y  ++   T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I VY   KN
Sbjct: 584  NVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +EKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM KK  + + 
Sbjct: 644  NREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKKKADILM 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            ++K+RFI GA  NGI K  A  IF ++  FA Y FNKSHAAAYA+++YQTA++K +Y +E
Sbjct: 704  EEKDRFIEGAMANGIDKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKKYYTIE 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+A+ +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + L AIK +G
Sbjct: 764  FMASLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823

Query: 847  TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 HI+ E      F  L DF  RVD+  +N+R++E+L+ +GA D  G +R  LL S+
Sbjct: 824  ENVIAHILKEREKKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGLNRNSLLASV 883

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            ++I   A    K +     + F    G  ++    +      +    + E+  +G Y S 
Sbjct: 884  EDIL--AIKQTKKKNANQFSFF-EISGNENESFVYKNMPQPTAQELMKMEKDTIGVYISS 940

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRG-----NNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            HPL+ Y   + K  I    E  A           I +  ++   + K T+    + +   
Sbjct: 941  HPLEKYTEEISKYNITPLSEISAMSEEDEYKFEQILVCGILKEVKVKLTKNNLTMAFAKL 1000

Query: 1021 SEPAKEYEANFFP 1033
             +     E  FFP
Sbjct: 1001 EDLTDSVEVLFFP 1013


>gi|312135078|ref|YP_004002416.1| DNA polymerase III subunit alpha [Caldicellulosiruptor owensensis OL]
 gi|311775129|gb|ADQ04616.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor owensensis
            OL]
          Length = 1140

 Score = 1089 bits (2817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1033 (37%), Positives = 603/1033 (58%), Gaps = 30/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA  ++ + +++      A+AITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGAMYGVIDFYKAAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +          +    +  +VLL    +GY+ L  +VS  ++        
Sbjct: 62   IIGCEVYLAPRTRFDKEANIDSD---IHHLVLLAMDNDGYRNLSRIVSIGFVEG-FYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L +  ++GL+ LT   +G I +       +     +  +K++FG+  Y  LQ H
Sbjct: 118  RVDREVLSKY-SKGLVALTSCLAGEIPKFILREQKEKLYDAISFYKEVFGENFYFELQNH 176

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +  +++++L+  +++PLVATN+  +L  ED   HD+L+ +     +S  +R   
Sbjct: 177  YIDEQRFVNNELIRLSKKYQVPLVATNDVHYLKREDRNLHDILLCIQTGKTISDSNRMEF 236

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +F  +PEAL+NT+EIA +C+   +     LP+F   E    + + 
Sbjct: 237  PTDEFYLKSPEEMHQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEG---KNDP 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+  A  G + R ++   A          RL  EL VI  M F  YFLIV DFI +A
Sbjct: 294  FEYLKELAFEGFKKRYSKDDKAAY-------DRLMMELQVIKDMGFVEYFLIVQDFINYA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDFC  RR
Sbjct: 347  KQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFCYQRR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP  P   +
Sbjct: 407  QEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGIPYSQVDEIAKMIPFSPGMTI 466

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   ++    + +V ++++ ++ LEG+ RHAS HAAG+VI + P++ LVP+ R
Sbjct: 467  D-KALEINHELKKIYEQNDTVRKIIDTARNLEGMPRHASVHAAGVVISNCPITDLVPLAR 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL  I ++D 
Sbjct: 526  --TDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDRIDYNDK 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y  ++   T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I VY   KN
Sbjct: 584  NVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +EKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM KK  + + 
Sbjct: 644  NREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKKKADILM 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            ++++RFI GA  NG+++  A  IF ++  FA Y FNKSHAAAYA+++YQTA++K +Y +E
Sbjct: 704  EERDRFIEGAVANGVNRETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKKYYTIE 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ + +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + L AIK +G
Sbjct: 764  FMTSLITSVMNSNEKVGMYIEECRRFGISILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823

Query: 847  TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 HI+ E      F  L DF  RVD+  +N+R++E+L+ +GA D  G +R  LL S+
Sbjct: 824  ENVIAHILSEREEKGTFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGINRNSLLASV 883

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            ++I        K +     + F    G  ++    +      +    + E+  +G Y S 
Sbjct: 884  EDIL--VLKQAKKKNANQFSFF-EISGNENESFEYKSLPQPTAQELMKMEKDSIGIYISS 940

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRG-----NNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            HPL+ Y   + +  +    E              I +  ++   + K T+    + +   
Sbjct: 941  HPLERYTEEISRYNVTPLSEISTMSEEDEYKFEQILVCGILKEVKVKLTKNNQTMAFGKL 1000

Query: 1021 SEPAKEYEANFFP 1033
             +     E  FFP
Sbjct: 1001 EDLTDSVEVLFFP 1013


>gi|160945128|ref|ZP_02092354.1| hypothetical protein FAEPRAM212_02647 [Faecalibacterium prausnitzii
            M21/2]
 gi|158442859|gb|EDP19864.1| hypothetical protein FAEPRAM212_02647 [Faecalibacterium prausnitzii
            M21/2]
          Length = 1169

 Score = 1089 bits (2817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1056 (35%), Positives = 594/1056 (56%), Gaps = 42/1056 (3%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +++    +  F HL +H+ YSLL+GA  ++ +++++    Q AIA TD   ++  ++F +
Sbjct: 1    MSEPTANTRPFAHLHIHTEYSLLDGACRIDQLMERVKECGQTAIACTDHGVMYGCVQFYK 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AGI+PIIGC++ +  +      N+          ++LL     GY+ LI++VS  +
Sbjct: 61   AAKKAGIKPIIGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLIKMVSAGF 116

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-G 179
            +        R+    L++   EGLI L+   +G I +A      + A+   L ++ LF  
Sbjct: 117  VEG-FYSKPRVDKQLLEQYH-EGLICLSACLAGEIPQAILAGDYERAKATALWYRDLFGA 174

Query: 180  DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +  Y+ LQ H    D     Q+++L+    +P+ ATN++ +L +ED +   +L+ +    
Sbjct: 175  ENYYIELQDHGLKEDSTVLPQLIKLSRETGIPMAATNDAHYLRKEDAKMQSILLCIQTGK 234

Query: 239  VVSQKDRPRVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             +   DR     D +  K   EM  +FS +PEA  NT +IA +C+F  +     +P +  
Sbjct: 235  TIQDADRMEFQTDEFYVKTTDEMYELFSMVPEACANTAKIAEQCNFDFEFGHTKIPYYKA 294

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             +  D Q             GLE R            Q    RL +E++V+  M ++ Y+
Sbjct: 295  PDGMDNQA----YFEKLCWDGLERRYGPDV------PQANIDRLKYEISVVKTMGYTNYY 344

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV D+I +AK   IPVGPGRGSGAGS+ AY + ITDIDP+R++L+FERFLNP+R+SMPD
Sbjct: 345  LIVWDYINFAKSQGIPVGPGRGSGAGSIAAYCVGITDIDPIRYNLIFERFLNPERVSMPD 404

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC +RR EVI YV  KYG + VAQI+TFG++ A+ A+RDVGR + +PY QVD + K
Sbjct: 405  FDVDFCYERRQEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGIPYQQVDVVAK 464

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+P +    +  +A+   S  ++    DP V  L++ + K+EG+ RHASTHAAG+VI   
Sbjct: 465  LVPMELKMTLK-RALEVSSELKKLYDTDPQVTELIDTALKVEGMPRHASTHAAGVVITPE 523

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            P    +P+       LPVTQFNM  IE+ GL+K DFLGL+TLT+++ +   + ++  +  
Sbjct: 524  PTDYYLPL--ATNDGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIRDAEVAVQKQHPEFS 581

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            + ++ +DD +TY +L    T G+FQLESSGM+Q L G+QP  +ED+IAL+SLYRPGP+D+
Sbjct: 582  IRMLDYDDPDTYKMLGQGDTEGVFQLESSGMKQVLVGLQPQNLEDVIALISLYRPGPMDS 641

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y   ++  +KI    P +  +L  T G I+YQEQVMQI + L+G+S  +AD +RRAM
Sbjct: 642  IPTYLRNRHEPDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRAM 701

Query: 718  GKKIKEEMDKQKERFISGASK----------NGISKTIAVNIFELLAKFADYGFNKSHAA 767
             KK    M+ ++E F+ G ++          NGI + +A  I++ ++ FA Y FNKSHAA
Sbjct: 702  SKKKHAVMEAEREHFVHGCTEPGHECPGCVANGIPEQVANQIYDEMSSFASYAFNKSHAA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
             YA +++QTA++K HYP +F+AA +T  +DN +K+ ++  +  +  I+++PP VN     
Sbjct: 762  CYAYVAFQTAYLKCHYPSQFMAALLTSVLDNTDKVIEYSGECARLGIKVLPPDVNISNGG 821

Query: 828  FKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F   DN  I + L A+K VG     + +    +KP+ SL DFC R+   +LNRR +ESL+
Sbjct: 822  FTADDNGQIRFGLNAVKNVGRNLIENAVTERKEKPYTSLYDFCKRMHGSELNRRAVESLI 881

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-----SDKITLE 941
             AGA DCFG +R  ++++++ I K  +   +       ++F+   G        D   + 
Sbjct: 882  KAGAFDCFGSNRHSMVEAVEGILKSIETDSRRNLEGQLDLFSVMSGEVQQSPQEDVYEIR 941

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA----TIRGNNIRL 997
              +    +   + E+ V G Y SGHPLD Y+    ++G    ++          G  +R+
Sbjct: 942  PLAEYTPAELLQQEKEVSGLYLSGHPLDAYREKSARIGSHTIKDLTGEDAHVQDGEKVRI 1001

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               VV  +   T+  S + + +  +     E   FP
Sbjct: 1002 VCAVVKNRMMTTKSNSMMAFTSVEDLTGTMEVIVFP 1037


>gi|161504650|ref|YP_001571762.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. arizonae
            serovar 62:z4,z23:-- str. RSK2980]
 gi|160865997|gb|ABX22620.1| hypothetical protein SARI_02771 [Salmonella enterica subsp. arizonae
            serovar 62:z4,z23:--]
          Length = 1144

 Score = 1089 bits (2816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1032 (39%), Positives = 605/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K A+   PA+AITD  NL   ++F      AGI+PI+G   ++  + 
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNE- 59

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                          +  + +L S   GYQ L  L+S+ Y    G     +   WL E+  
Sbjct: 60   ---------LLGDELTHLTVLASDNTGYQNLTLLISKAYQRGYGASGPIVDRDWLIEL-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSIDE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEALENTVEIA+RC+  +++    LP+F   +        E+ L  K+  GL
Sbjct: 230  MCELFADIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDYLVKKSKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERKKRRPEYDERLNIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D     Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I++A      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          +  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQPWPEQMVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG     A +V++ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|317152330|ref|YP_004120378.1| DNA polymerase III subunit alpha [Desulfovibrio aespoeensis Aspo-2]
 gi|316942581|gb|ADU61632.1| DNA polymerase III, alpha subunit [Desulfovibrio aespoeensis Aspo-2]
          Length = 1173

 Score = 1089 bits (2816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1043 (40%), Positives = 610/1043 (58%), Gaps = 28/1043 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+GA+ +N++L +      PA+AITD  ++F A+ F  +A A GI+PI
Sbjct: 4    FVHLHVHSEYSLLDGAIRINDLLARAKDLGMPAVAITDHGSMFGAMTFYTEALAMGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +   D                 +VLL     GY+ LI+LV+  YL        R
Sbjct: 64   IGCEVYVAPGDIDDAHAHEVKDKSGGYHLVLLAKNRIGYKNLIKLVTTGYLEG-FYYKPR 122

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   +L +   EGLI L+   +G + R       +        ++ +F    Y+ LQ + 
Sbjct: 123  VSK-YLLKQHAEGLIALSACLAGEVPRMLMNEGLEAGAAMAGEYESIFPGNFYLELQDNG 181

Query: 191  GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS-QKDRPRV 248
               + R +++ ++ A    LPLVATN+  +L+ EDYEAHD L+ +   T V  +K     
Sbjct: 182  IGKQTRLNELLIKCAEKTGLPLVATNDCHYLTAEDYEAHDTLLCIQTQTTVDAEKRFRMD 241

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K   EM   F+ +PEA+ NT  IA RC+  +++ +   P +   E  +   +  
Sbjct: 242  TRELYFKTPEEMEQAFAHVPEAIANTQRIAERCNLEIELGSYYFPEY---ELSEGVADIN 298

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             E       GL  RLA  AI        Y +RLD+EL VI +M F  YFLIV DFI WAK
Sbjct: 299  EEFEKLCREGLRKRLA--AIPYPVDEAVYWKRLDYELGVIIKMGFPAYFLIVQDFINWAK 356

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N IPVGPGRGS AGS+ A++L IT++DPL + LLFERFLN +R+SMPD D+DFC+ RR 
Sbjct: 357  DNRIPVGPGRGSAAGSIVAWSLRITNLDPLPYDLLFERFLNVERISMPDIDVDFCERRRL 416

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EV++Y  +KYGH+RVAQI TFG+++ KA ++DVGRAL M + + DR+ KLIP DP     
Sbjct: 417  EVVKYCADKYGHDRVAQITTFGTMKTKAVIKDVGRALGMTFGETDRIAKLIPEDPGVMAK 476

Query: 489  L-----------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L            A+       +    DP V +L++IS +LEGL RHASTHAAG+VI DR
Sbjct: 477  LLGVEKAKISVPNAVKAVIELDDMVATDPRVAKLIDISTRLEGLCRHASTHAAGVVISDR 536

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-V 596
            P+++ +P+Y+  + +  VTQF+MK +EK GLIKFDFLGL+T+T+++  LD + ++G    
Sbjct: 537  PMTEFLPLYKGKKGE-IVTQFDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIREQGKHAP 595

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL  +  DD  TY +     T GIFQ+ESSGMR+ L  ++P+C EDIIA+++LYRPGP+ 
Sbjct: 596  DLDTLALDDPATYDIFAKGDTDGIFQVESSGMRKYLRMLRPNCFEDIIAMLALYRPGPLG 655

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
              +V  +  RK+G+  +   HP ++  LK T GV++YQEQVM  A +++ YSL E D+LR
Sbjct: 656  MGMVDEFIKRKHGEVAVSYPHPSLEDTLKPTYGVMVYQEQVMATAMIIANYSLGEGDLLR 715

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKKI EEM  Q+ RF+ GA +N I + +A  IF+ + KFA YGFNKSH+AAYA+ISY
Sbjct: 716  RAMGKKIAEEMAMQRARFLEGARENKIDEAVANAIFDTMEKFAAYGFNKSHSAAYALISY 775

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TA++K H+PVEF+AA M+ EM+N EKI  +    R  +I +  P +N     F V D  
Sbjct: 776  HTAYLKAHFPVEFMAALMSTEMNNTEKIVMYINACRDMDITVKQPDINAGQARFSVLDGD 835

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I +++AAIK VG      I+    A  PF  +  FC R++ +++ +RVLESL+ AGALDC
Sbjct: 836  ILFAMAAIKNVGEEAINEIVAERVAGGPFKDIFAFCERINLRRVTKRVLESLIKAGALDC 895

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---ITLEKFSVENSSV 950
            F  SR  LL+ L+    + Q   K + +   ++     G  +      T       +   
Sbjct: 896  FSCSRAALLEDLEKAVGFGQKKAKEKESGMLSMLDMLGGASAQAAHTPTCSSCEEFDDRE 955

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            + E E+ VLGF+ SGHPL  Y+  L ++     E+  +   G  +R+A ++   +Q  T+
Sbjct: 956  KLEMEKEVLGFFLSGHPLLAYRHELARLRTATLEDCKSMPNGTEVRVAVIIPDYKQFITK 1015

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
            KG  + + T  +     E    P
Sbjct: 1016 KGDPMAFCTAEDLTTSGEITMLP 1038


>gi|225571413|ref|ZP_03780409.1| hypothetical protein CLOHYLEM_07511 [Clostridium hylemonae DSM 15053]
 gi|225159889|gb|EEG72508.1| hypothetical protein CLOHYLEM_07511 [Clostridium hylemonae DSM 15053]
          Length = 1159

 Score = 1089 bits (2816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1048 (36%), Positives = 567/1048 (54%), Gaps = 40/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      ++AITD   +F  ++F + A  AG++P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKECISRVKELGMDSVAITDHGVMFGVIDFYRAAKEAGVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC++ +           G +       +VLL     GY  L++LVSR +         
Sbjct: 62   VLGCEVYVAPGSRFDKEA-GGSGEDRYYHLVLLAENDMGYHNLMKLVSRGFTEG-YYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+ L  L+E   EG+I L+   +G + R         A+     ++ +FG+   ++ LQ 
Sbjct: 120  RVDLELLEEYH-EGIIALSACLAGEVQRNIMRGMYSEAKAAAQRYEGIFGEGNFFLELQD 178

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++      +++L+    + LVATN+  +  E+D + HD+L+ +     ++ +DR R
Sbjct: 179  HGMQEQKMVNQSLLRLSQETGIELVATNDIHYTYEDDVKPHDILLCLQTGKKLADEDRMR 238

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM  +F    +ALENT +IA RC+  ++     LP++   E       
Sbjct: 239  YEGGQYYIKSEEEMRRLFPYALQALENTQKIADRCNVEIEFGVTKLPKYDVPEG----YT 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     GL+ R   G        +   +RL++EL+VI  M +  YFLIV DFI++
Sbjct: 295  SWEYLRKLCFEGLKRRYPDG-------EEALAERLEYELSVIQSMGYVDYFLIVWDFIKY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK ++I VGPGRGS AGS+ +Y L IT IDP+++ LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 348  AKDHDIIVGPGRGSAAGSIVSYCLDITSIDPIKYQLLFERFLNPERVSMPDIDIDFCFER 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG+L A+  +RDVGR + +PY+ VD + K++P +    
Sbjct: 408  RQEVIDYVVEKYGSDRVVQIVTFGTLAARGVIRDVGRVMDLPYAFVDNIAKMVPTELNMT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+A +   R     D  V  L+++S++LEGL RH S HAAG+VI  + + + VP+ 
Sbjct: 468  LE-RALAMNPELRRVYQEDEQVRELIDMSKRLEGLPRHTSMHAAGVVISQKAVDEYVPLS 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                     TQF M  +E+ GL+K DFLGL+TLT++Q +        G  +D+  I +DD
Sbjct: 527  LGS-DGSVTTQFTMTTLEELGLLKMDFLGLRTLTVIQNAAQLAGVSTGQPIDMDNIDYDD 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +    + T  T GIFQLES GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 586  KKVLSSIGTGRTDGIFQLESGGMKSFMKELKPQSLEDIIAGISLYRPGPMDFIPQYIKGK 645

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  + I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK  + M
Sbjct: 646  NNAQSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKGDVM 705

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K+++ F+         G  KNGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 706  KKERQNFVYGNEEEGVPGCIKNGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 765

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNRIY 836
            W+K +YPVEF+AA MT  +DN  K+ ++    R Q  I+IMPP +N    +F V + RI 
Sbjct: 766  WLKYYYPVEFMAALMTSCIDNPGKVAEYIYTCRQQMGIEIMPPDINKGLGNFTVENGRIR 825

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y LAAIK +G      I+    A  PF +L+DF  R+  K++N+R LE+ + +GA D  G
Sbjct: 826  YGLAAIKSIGRPVIDAIVSERGAGGPFKTLKDFIERMSGKEVNKRTLENFIKSGAFDSLG 885

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFE 953
             +R Q +     I        K        +F    E       I L             
Sbjct: 886  GTRKQFMIIYVQILDQVNQERKYSMTGQMTLFDMVDEDQKAEFDIPLPDVGEYEKENLLS 945

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQ 1005
             E+ VLG Y SGHP++ Y+   +K   +   +              G    +  ++  K 
Sbjct: 946  FEKEVLGIYLSGHPMEEYEEKWKKSITRTTLDFQLDEETGQTKVHDGAQEVVGGIIADKT 1005

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K T+    + ++T  + A   E   FP
Sbjct: 1006 IKYTKNNKTMAFLTLEDLAGTVEVVVFP 1033


>gi|313646755|gb|EFS11214.1| DNA polymerase III subunit alpha [Shigella flexneri 2a str. 2457T]
          Length = 1140

 Score = 1089 bits (2816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1028 (40%), Positives = 604/1028 (58%), Gaps = 38/1028 (3%)

Query: 26   ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKM 85
                  ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++        
Sbjct: 1    MAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV-------- 52

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
              Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  EGLI
Sbjct: 53   --QCDLLGDELTHLTVLAANNTGYQNLALLISKAYQRGYGAAGPIIDRDWLIEL-NEGLI 109

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLA 204
            +L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        V+LA
Sbjct: 110  LLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELA 169

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSI 263
                LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  EM  +
Sbjct: 170  EARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCEL 229

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GLE RL
Sbjct: 230  FADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGLEERL 284

Query: 324  A---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
            A        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGS
Sbjct: 285  AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 344

Query: 381  GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
            GAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG 
Sbjct: 345  GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 404

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E
Sbjct: 405  DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPE 463

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
               AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+ 
Sbjct: 464  IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 523

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTK 615
              +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +L   
Sbjct: 524  SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 583

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVS 673
             T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E+I  
Sbjct: 584  ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 643

Query: 674  I-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
                  H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EEM KQ
Sbjct: 644  PDVQWQHESLKSVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 703

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+
Sbjct: 704  RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 763

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGT 847
            AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIKGVG 
Sbjct: 764  AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGE 823

Query: 848  TTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL 
Sbjct: 824  GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 883

Query: 907  NIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +  K A    K       ++F    +     + +          V  + E+  LG Y +G
Sbjct: 884  DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 943

Query: 966  HPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            HP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +
Sbjct: 944  HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1003

Query: 1025 KEYEANFF 1032
               E   F
Sbjct: 1004 GRLEVMLF 1011


>gi|220927035|ref|YP_002502337.1| DNA polymerase III subunit alpha [Methylobacterium nodulans ORS 2060]
 gi|219951642|gb|ACL62034.1| DNA polymerase III, alpha subunit [Methylobacterium nodulans ORS
            2060]
          Length = 1158

 Score = 1089 bits (2816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 516/1040 (49%), Positives = 709/1040 (68%), Gaps = 19/1040 (1%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL  HSSYSLLEGAL + +++   +AD+QPA+A+TDTNNLF ALEFS+KA +AG
Sbjct: 5    KDVGFVHLHTHSSYSLLEGALKIGDLVKAASADRQPALALTDTNNLFGALEFSEKAASAG 64

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPI G QL +  +        G +P   +P++VLL     GY  L+ L S  Y      
Sbjct: 65   IQPIAGIQLSVLFEAPEPGQRGGPSP---LPNLVLLAKDETGYGHLLRLASLAYFDGPLG 121

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
            ++ R+ +  L +    GLI LTGG  GP+D        + A  RL    + F  D LYV 
Sbjct: 122  EAPRVPIEALTDCA-PGLIALTGGFDGPLDSCLRAARPEHAASRLARLLEAFGEDHLYVE 180

Query: 186  LQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +QRH   D    E++++ LA  H LPLVATN   F   EDYEAHD L+A+A   +VS + 
Sbjct: 181  IQRHGLPDERTVEAELIALADRHGLPLVATNEPFFAKPEDYEAHDALLAIAEGRIVSDEK 240

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TP H  K R+ MV +F DLP+AL  +VEIA RC++ ++   PILP F         
Sbjct: 241  RRRLTPRHDFKTRAAMVELFRDLPDALAASVEIAMRCAYRVRTRKPILPSFGLPAGHAPA 300

Query: 305  K-----EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +     +E  EL+ +A AGL  RLAQ   A+G   QDYR RL +E+ +I +MKF GYFLI
Sbjct: 301  QAAEFLDEAGELKRQAEAGLTRRLAQAGPAEGLTEQDYRDRLAYEIGIITKMKFPGYFLI 360

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V+DFI+WAK N+IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLNP+R+SMPDFD
Sbjct: 361  VSDFIKWAKANDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLNPERVSMPDFD 420

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC   R+ VI YVQ++YG  +VAQIITFG+L A+  LRDVGR L+MPY QVD+L KL+
Sbjct: 421  IDFCVVGRERVIEYVQSRYGERQVAQIITFGTLLARGVLRDVGRVLEMPYGQVDKLTKLV 480

Query: 480  PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P +PA+PV+L QAI  + R + A   +P V RL+EI++KLEGL+RHASTHAAG+VIGDRP
Sbjct: 481  PQNPANPVTLAQAIEGEPRLQSAMEEEPVVARLMEIAKKLEGLHRHASTHAAGVVIGDRP 540

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            L +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ + D L +RG+++DL
Sbjct: 541  LEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTVLRGATDLLKRRGIEIDL 600

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  TY  L     +G+FQ+ES+GMR+AL  M  D  ED+IALV+LYRPGP+ NI
Sbjct: 601  ATLPIDDEHTYERLRKGEVVGVFQVESAGMRKALVEMCADRFEDLIALVALYRPGPMANI 660

Query: 659  VVYNNRKNGK----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
             VY  RK G+    E +   HP ++P+L ET G+I+YQEQVM++A++L+GYSL +AD+LR
Sbjct: 661  PVYCERKLGRDAGNEAVWYPHPKLEPILAETFGIIVYQEQVMEVAKVLAGYSLGDADLLR 720

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKKIK EMD Q++RF+ GA + G+ +  A  IF+LLAKFADYGFNKSHAAAYA+I+Y
Sbjct: 721  RAMGKKIKAEMDAQRDRFLKGAMERGLDRAKADEIFDLLAKFADYGFNKSHAAAYALITY 780

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEFLAASM+ ++D+ +K+ +  QDA++ +I++ PPSVN   V F+V D  
Sbjct: 781  QTAYLKANYPVEFLAASMSQDLDDTDKLAELRQDAQRLDIKVEPPSVNRSGVTFEVHDGT 840

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I Y+LAAIKGVG      I++A  D+PF  L DF  R++ + +N+R LESLV AGALD  
Sbjct: 841  IRYALAAIKGVGRAAVEAIVQARGDRPFRDLGDFARRLNPRLVNKRTLESLVGAGALDEI 900

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
               R +   +++ + + AQ   +       ++F     +    + +  +    ++ R + 
Sbjct: 901  EPDRARAFAAIEPMLRLAQGALEAEAVGMSDMFGGVAAS-DVALRIPAYEPWPAADRLKK 959

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAMVVSKQQKKTRKG 1012
            E   +GF+ SGHPLD Y  +L+K+ ++ + E   ++R GN++ R+AA V+ + +++T+ G
Sbjct: 960  EYEAVGFFLSGHPLDEYGDLLKKLRVQTWVEFCRSVRAGNSVGRVAATVLDRSERRTKTG 1019

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            ++IG V  S+    +EA  F
Sbjct: 1020 NKIGIVNLSDQTGHFEAIVF 1039


>gi|293394718|ref|ZP_06639010.1| DNA-directed DNA polymerase III alpha subunit [Serratia odorifera DSM
            4582]
 gi|291422844|gb|EFE96081.1| DNA-directed DNA polymerase III alpha subunit [Serratia odorifera DSM
            4582]
          Length = 1172

 Score = 1089 bits (2816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1047 (40%), Positives = 613/1047 (58%), Gaps = 40/1047 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 14   PRFIHLRVHSDYSMIDGLAKVGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGAGIK 73

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q       +  + +L +  +GYQ L  L+SR Y    G   
Sbjct: 74   PIIGADFHV----------QSDVLGDELAQLTVLAANNDGYQNLTLLISRAYQRGYGAAG 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+GG  G + +     +    E+ L  +++ F D  Y+ L R
Sbjct: 124  PIIDRDWLVE-HREGLILLSGGRMGDVGKFLLRGNHAQVEQCLAFYQQYFPDNYYLELIR 182

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA   +LP+VATN+  FL E+D++AH++ +A+     +    RP 
Sbjct: 183  TGRPDEENYLHAAVALATERDLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPR 242

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y++N  EM  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 243  NYSPQQYMRNEDEMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM-----T 297

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 298  TEDFLVAKSKEGLEERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEF 357

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K NN+PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 358  IQWSKDNNVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 417

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 418  MEKRDLVIEHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 477

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 478  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 536

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D+
Sbjct: 537  PLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINKRRAKTDLPPIDI 596

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 597  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 656

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 657  MVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 716

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   GI   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 717  MLRRAMGKKNPVEMAKQRGGFEDGAKARGIDGELSIKIFDLVEKFAGYGFNKSHSAAYAL 776

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 777  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYHFHVN 836

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            D+    Y + AIKGVG      I+EA        F  L D C+R D KKLNRR+LE L+ 
Sbjct: 837  DDGEIVYGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIM 896

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +    +  
Sbjct: 897  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANVAPW 956

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP+  Y   + +  G +  ++   T RG       +VV+ +
Sbjct: 957  QEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVVAAR 1016

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1017 VMVTKRGNRIGICTLDDRSGRLEVMLF 1043


>gi|257439793|ref|ZP_05615548.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
            A2-165]
 gi|257197702|gb|EEU95986.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
            A2-165]
          Length = 1171

 Score = 1089 bits (2816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1054 (36%), Positives = 590/1054 (55%), Gaps = 41/1054 (3%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            ++  ++   FVHL +H+ YSLL+GA  ++ ++D++    Q AIA TD   ++  ++F + 
Sbjct: 5    SEGNKQGRDFVHLHIHTEYSLLDGACRIDQLMDRVKECGQTAIACTDHGVMYGCVQFYKA 64

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A  AGI+PIIGC++ +  +      N+          ++LL     GY+ L +LVS  ++
Sbjct: 65   AKKAGIKPIIGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLAKLVSAAFI 120

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD- 180
                    R+    L++   EGLI L+   +G I +A      + A+   L ++ LFG+ 
Sbjct: 121  EG-FYSKPRVDKQLLEQYH-EGLICLSACLAGEIPQAILSGDYERAKASALWYRDLFGEG 178

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQ H    D     Q+++LA    +P+ ATN+S +L +ED +   +L+ +     
Sbjct: 179  NYYIELQDHGLEEDNIVLPQLIKLARETGIPMAATNDSHYLRKEDAKMQAILLCIQTGKT 238

Query: 240  VSQKDRPRVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +   DR     D +  K   EM  +F+ +P+A  NT  IA +C+F  +     +P +   
Sbjct: 239  MQDADRMEFQTDEFYVKTTDEMYDLFAMVPDACANTRIIADQCNFDFEFGNTKIPYYKAP 298

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
               D Q             GLE R            Q  + RL++E++VI  M ++ Y+L
Sbjct: 299  GGMDNQA----FFEKLCWEGLERRYGSNV------PQANKDRLNYEISVIKTMGYTNYYL 348

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV D++ +AK   IPVGPGRGSGAGS+ AY++ ITDIDP+R++L+FERFLNP+R+SMPDF
Sbjct: 349  IVWDYVNYAKSQGIPVGPGRGSGAGSIAAYSVGITDIDPIRYNLIFERFLNPERVSMPDF 408

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC +RR EVI YV  KYG + VAQI+TFG++ A+ A+RDVGR + MPY +VD + K 
Sbjct: 409  DVDFCYERRQEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGMPYQEVDVVAKQ 468

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +P +    +   A+      R     DP V  LL+ + K+EG+ RHASTHAAG+VI   P
Sbjct: 469  VPAELKMTIK-HALEVSPELRRMYETDPKVTELLDTAMKVEGMPRHASTHAAGVVITPEP 527

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
                +P+       LPVTQFNM  IE+ GL+K DFLGL+TLT+++ +   + ++     +
Sbjct: 528  TDYYLPL--ATNDGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIRDAELAIQKKEPDFSI 585

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + + +DD ETY +L+   T G+FQLESSGM+Q L G+QP  +ED+IAL+SLYRPGP+D+I
Sbjct: 586  AKLDYDDPETYKMLSRGETEGVFQLESSGMKQVLVGLQPQNLEDVIALISLYRPGPMDSI 645

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y   ++  +KI    P +  +L  T G I+YQEQVMQI + L+G+S  +AD +RRAM 
Sbjct: 646  PTYLRNRHEPDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRAMS 705

Query: 719  KKIKEEMDKQKERFIS----------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            KK    M+ ++E F+           G   NGIS+ IA  I++ ++ FA Y FNKSHAA 
Sbjct: 706  KKKHAVMEAEREHFVHGCTDPGNECPGCVANGISEKIANEIYDEMSSFASYAFNKSHAAC 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA +++QTA++K HYP EF+AA +T  +DN  K+ ++  +  +  I+++PP +N     F
Sbjct: 766  YAYVAFQTAYLKCHYPSEFMAALLTSVLDNTGKVIEYSGECARLGIKVLPPDINISGSGF 825

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               D  RI + L A+K VGT      +E   +KP+ SL DFC R+   +LNRR +ESL+ 
Sbjct: 826  TAEDSGRIRFGLNAVKNVGTRLIERSVEERQEKPYTSLYDFCKRMHGTELNRRTVESLIK 885

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT----FSDKITLEKF 943
            AGA D  G +R  L+++ + + K  +   +   +   ++F+   GT     +D   ++  
Sbjct: 886  AGAFDNLGSNRRSLVEATEGVLKSIESDSRKNLDGQIDLFSMMSGTDNTSAADSYEIKPC 945

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE----ESVATIRGNNIRLAA 999
                 +   + E+ V G Y SGHPLD Y+    +      +    E       +++R+  
Sbjct: 946  PEYTHAELLQQEKEVSGLYLSGHPLDAYREQSAQFATHTIKALTGEDANVPDNSHVRIVC 1005

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +V  +   T+  S + + +  +     E   FP
Sbjct: 1006 TIVKSKMVTTKTNSMMAYTSVEDLTGTMEVIVFP 1039


>gi|315111546|ref|YP_421932.2| DNA polymerase III subunit alpha [Magnetospirillum magneticum AMB-1]
          Length = 1154

 Score = 1088 bits (2815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 501/1047 (47%), Positives = 689/1047 (65%), Gaps = 31/1047 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL+VH++YSL EGA+ L  ++        PA+ ITDT NLF ALEFS     
Sbjct: 1    MPAYADFVHLRVHTAYSLAEGAIKLKQLIKLCEKAAMPAVGITDTANLFGALEFSTSCSD 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPI+G Q+ I  +D    +  G+ P P    +VLL     GY  L++LVS+ +L   
Sbjct: 61   AGIQPIVGAQIAIRREDG-GPSKDGRKPEPDT--LVLLCQNEAGYLNLLKLVSKAFLETD 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              ++ ++ L  L E  ++GLI+LTGG +GP+ R      ++ AE  L    + F  R YV
Sbjct: 118  AGETPQVTLHDL-ETRSDGLIVLTGGPAGPVGRLLADGQTEKAEIVLARLARAFAGRCYV 176

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L RH    +   E  +V LAY H+LPLVATN + F     YEAHD L+ +A    +SQ 
Sbjct: 177  ELMRHNLEVEDRIEPLLVSLAYKHDLPLVATNEAFFADRGMYEAHDALVCIAEGAYISQD 236

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            +R R+TP+HY K+  EM ++F+DLPEA +NT+ IARRC+F +    PILP +        
Sbjct: 237  ERRRLTPEHYFKSPEEMRALFADLPEACDNTLVIARRCAFGVAKRKPILPPYRMD----- 291

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARMKFSGY 356
               E   LR K   GLE RL +    +G    +       YR+R++FELNVI  M F GY
Sbjct: 292  GLTEAEVLRKKTWEGLEARLEKHVFKEGMTDDEKEHAAKPYRERIEFELNVIEEMGFPGY 351

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV+DFIQW+K   IPVGPGRGSGAGS  A+ALTITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 352  FLIVSDFIQWSKAQEIPVGPGRGSGAGSAVAWALTITDLDPLRWGLLFERFLNPERVSMP 411

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFCQDRR+E IRYVQ KYG+ +VAQIITFG LQA+A LRDVGR LQMPY QVDR+C
Sbjct: 412  DFDIDFCQDRREETIRYVQGKYGYSQVAQIITFGKLQARAVLRDVGRVLQMPYGQVDRIC 471

Query: 477  KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            KL+PN+PA+P++L QA+  +   +E +  D +V  L++++ KLEGLYRHASTHAAG+VIG
Sbjct: 472  KLVPNNPANPMTLEQALESEPLLKEQKERDEAVSHLIDLAMKLEGLYRHASTHAAGVVIG 531

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
            DRPL +LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT++  ++  + + +G+
Sbjct: 532  DRPLDELVPLYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVMVTAVKHVKKTKGI 591

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +DLS IP DD ++Y LL+     G+FQLESSGMR  L  M P+ +ED+IA+V+LYRPGP
Sbjct: 592  DIDLSAIPLDDAKSYELLSRGDAAGVFQLESSGMRDVLRKMGPNRLEDLIAVVALYRPGP 651

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  Y   K+GKE+   +HPL++P+LKET G+++YQEQVMQIAQ+LSGYSL  AD+LR
Sbjct: 652  MDQIPRYIACKHGKEEPDYMHPLLEPILKETFGIMVYQEQVMQIAQVLSGYSLGGADLLR 711

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK +EEMD+Q+ +F+ GA+   +    A  IF+ +AKFA+YGFNKSHAAAYA+I+Y
Sbjct: 712  RAMGKKDREEMDRQRAKFVEGATARAVDGGQASMIFDKVAKFAEYGFNKSHAAAYALIAY 771

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---- 830
            QTAW+K +YP EF+AA+MT EM N +K+  F Q+  +  I+++PP +N     F V    
Sbjct: 772  QTAWLKANYPAEFMAATMTYEMSNTDKLNSFRQELDRLGIKLLPPDINASQPTFSVEVLP 831

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             G + + Y+LAA+K VG    + ++ E      F  + DF +R+DSK LNRR LE++V A
Sbjct: 832  DGGSAVRYALAALKNVGEAAMKSLVDERERGGRFKDVGDFAARMDSKVLNRRQLENMVKA 891

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            G  D    +R +L ++ D + +YA    ++R +   ++     G+ +  + LE     + 
Sbjct: 892  GVFDSLDKNRGRLFKNADTLCRYAASAAEDRDSSQMSLLG---GSNAPTLKLESGPDWSP 948

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR---GNNIRLAAMVVSKQ 1005
              +   E   +GFY S HPLD Y   ++++ +    E    ++      +RLA  ++SKQ
Sbjct: 949  HEKLNQEFEAVGFYLSAHPLDAYAKSMKRLNVLKIAELPRHLQSGGKGRVRLAGSLLSKQ 1008

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++ + KGSR  ++ FS+ +  +E   F
Sbjct: 1009 ERVSAKGSRYAFLQFSDASGMFEVTCF 1035


>gi|229845787|ref|ZP_04465899.1| DNA polymerase III subunit alpha [Haemophilus influenzae 7P49H1]
 gi|229810791|gb|EEP46508.1| DNA polymerase III subunit alpha [Haemophilus influenzae 7P49H1]
          Length = 1159

 Score = 1088 bits (2815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1048 (39%), Positives = 603/1048 (57%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG            +  +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGA----------DVKVKSTLCGDEYFDLTLLAKNNEGYKNITLLLSKAYQRGY 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   EG+I+L+GG+ G I +     +    E  +  +++ F D  Y+
Sbjct: 111  N-DLPYIDQDWLIE-HREGVIILSGGTQGDIGKKLLKENVAEIESAVAFYQEFFADHFYL 168

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R  Q  ++LA +H LPLVATN+ +FL  +D+EAH++ +A+     +   
Sbjct: 169  ALTRTGKPDEERYIQAALKLAKSHGLPLVATNDVMFLKSDDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP   T   Y ++  EM  +F+D+P ALENT+ IA+RCS  L++    LP+F   +   
Sbjct: 229  KRPKYYTSQQYFRSEDEMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL-- 286

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +      Y +RL  EL+VI +M F GYFLI
Sbjct: 287  ---STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFSPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVRKGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +     Y + AIKGVG      ++ A      F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVTARNKGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A ++V+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAITKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|295091058|emb|CBK77165.1| DNA polymerase III catalytic subunit, DnaE type [Clostridium cf.
            saccharolyticum K10]
          Length = 1159

 Score = 1088 bits (2815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1047 (36%), Positives = 579/1047 (55%), Gaps = 41/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+ +  +  ++ +       ++AITD   ++  ++F + A  AGI+P
Sbjct: 2    AFTHLHVHTEYSLLDASSKIKELVARAKELGMDSLAITDHGVMYGVIDFYRAAREAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC++ +                     ++LL    EGYQ L+++VS  ++        
Sbjct: 62   VLGCEIYVAPGSRFDREIGAGE--DKYYHLILLAENNEGYQNLMKIVSTGFVEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L+   + GLI L+   +G + R       +  +K  L ++ +FG+   ++ LQ 
Sbjct: 119  RVDFETLERY-SRGLICLSACLAGEVQRNLARGMYEEGKKAALRYQSIFGEGNFFLELQD 177

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +   +Q +++++    +PLVATN+  ++  ED ++HD+L+ +     V+ ++R R
Sbjct: 178  HGIPLQKTVNQGLLRMSQDTGIPLVATNDCHYIYREDEKSHDILLCIQTGKKVADENRMR 237

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +YLK+  EM SIF    EALENT +IA RC+  ++     +P+F         K 
Sbjct: 238  YEGGQYYLKSEEEMKSIFPYALEALENTHKIAERCNVEIEFGVTKIPQFDVP----GGKT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      G   R               R+RLD+EL+VI  M +  YFLIV DFI +
Sbjct: 294  SWEYLNELCEEGFRTRYPDDDGT-------LRKRLDYELSVIQSMGYVDYFLIVWDFIHF 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ ++I VGPGRGS AGS+ +Y L ITDIDP+R++LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 347  ARSHDIMVGPGRGSAAGSIVSYCLRITDIDPIRYNLLFERFLNPERVSMPDIDIDFCFER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG+L AK  +RDVGR L MPY++ D + K+IP D    
Sbjct: 407  RQEVIDYVVQKYGRDRVVQIVTFGTLAAKGVVRDVGRVLDMPYAKCDAVAKMIPGDLGMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L         REA  +DP +  L+++S++LEGL RH S HAAG+VI    + + VP+ 
Sbjct: 467  --LDKALKTPELREAYDSDPEIKYLIDMSRRLEGLPRHTSMHAAGVVISRNKVDEYVPLS 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            R        TQF M  +E+ GL+K DFLGL+TLT++Q ++    +   +K+DL+ I ++D
Sbjct: 525  RAA-DGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVRQAEKTHHIKIDLNKIDYND 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                  L T    G+FQLESSGM+  ++ ++P+ +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 584  KAVLESLGTGKNDGVFQLESSGMKSFMKELKPENLEDIIAGISLYRPGPMDFIPKYLKGK 643

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N +  I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D++RRAM KK    M
Sbjct: 644  NDRASITYDCPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKAAVM 703

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K+++ F+         G   NGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 704  EKERQNFVYGNPEEGVKGCIANGIDEKTANTIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 763

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YPVEF+AA MT   DNV K+ ++    RQ  ++IMPP +N     F V +  I Y
Sbjct: 764  YLKYYYPVEFMAALMTSVKDNVSKVSEYILTCRQMGMKIMPPDINEGEGGFSVSNGAIRY 823

Query: 838  SLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+A+K +G T    I++   +  PF SL DF  R+ +K++N+R +ES + +GALD    
Sbjct: 824  GLSALKSIGQTVVDEIVKERTERGPFVSLADFIDRMSNKEVNKRTIESFIKSGALDSLPG 883

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFEN 954
            +R Q       + +     +KN      ++F   +    +  +IT               
Sbjct: 884  TRKQKFLVSAALLEQKNKEKKNSMEGQMSLFDFVEEEEKEQFQITFPDVGEYTKEELLAF 943

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006
            E+ +LG Y SGHPL+ Y  + +K       + +            G+ + +  M+  K  
Sbjct: 944  EKEMLGVYVSGHPLEEYMDLWKKNVTAVSSDFIVDEEEGHAKVRDGSYVTIGGMITEKTV 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K TR+   + ++T  + A   E   FP
Sbjct: 1004 KTTRQNKMMAFITVEDLAGTVEVLIFP 1030


>gi|126463991|ref|YP_001045104.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides ATCC 17029]
 gi|126105802|gb|ABN78332.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides ATCC
            17029]
          Length = 1163

 Score = 1088 bits (2814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 518/1058 (48%), Positives = 678/1058 (64%), Gaps = 48/1058 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+VH+ YSLLEGA+ +  ++    A   PA+A+TDTN +F+ALEFS  A  
Sbjct: 1    MSNAPRFIHLRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPI+GCQ+ +  +        G+ P P  P +VLL  T  GY  L++L S +YL  +
Sbjct: 61   AGIQPIVGCQVSVAYET----AALGERPKPPAP-VVLLAQTEAGYGNLMKLSSCLYL-GK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 ++ LS L E   EGLI LTGG  GP+ R         AE  L     ++  RLYV
Sbjct: 115  EGALPQVTLSEL-ERHGEGLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYV 173

Query: 185  NLQRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             LQRH G        +R  E   V+LAY   LPLVATN+  F   E YEAHD L+ +A  
Sbjct: 174  ELQRHPGEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEG 233

Query: 238  TVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V Q   R R+TP HY K+ +EMV++F+DLPEA+ENTVEIARRC+F      PILPRF 
Sbjct: 234  AYVDQVAPRRRLTPQHYFKSEAEMVALFADLPEAVENTVEIARRCAFKAAKRPPILPRFA 293

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            + E +        ELR +A  GL  RLA   I      +DY  RL FEL +I +M F GY
Sbjct: 294  DDEVE--------ELRRQAKEGLAARLA--VIPHAAPVEDYEARLAFELGIIEQMGFPGY 343

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI+W K N IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 344  FLIVADFIKWGKANGIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMP 403

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL 
Sbjct: 404  DFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463

Query: 477  KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K+IP +   PVS+ +A+AD+ R REA   +  V RLL+   ++EGL R+ASTHAAG+VIG
Sbjct: 464  KMIPVEGVKPVSIQKALADEPRLREAAKTEEVVKRLLDYGMQVEGLLRNASTHAAGVVIG 523

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            DRPL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D +   G  
Sbjct: 524  DRPLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIRGTGRP 583

Query: 596  ------------------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
                               D+  IP +D  TY L     T+ +FQ+ESSGM  AL  M+P
Sbjct: 584  LHMAADGRVLYDPPPGAENDIGHIPLEDKATYELYAQAKTVAVFQVESSGMMDALRRMKP 643

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             CIEDI+ALV+LYRPGP++NI VY   K+G   + S+HP IDP+LKETQG+I+YQEQVMQ
Sbjct: 644  TCIEDIVALVALYRPGPMENIPVYCEVKHGLRDLESLHPTIDPILKETQGIIVYQEQVMQ 703

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKF 756
            IAQ++ GY+L  AD+LRRAMGKKI EEM K++ +FI GA K +GI    A  +F+LL KF
Sbjct: 704  IAQVMGGYTLGGADLLRRAMGKKIAEEMAKERPKFIEGAKKTHGIDAKKAGEVFDLLEKF 763

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M  ++   +K+  + ++  +  I+ 
Sbjct: 764  ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRT 823

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            + P VN     F V D  + Y+L A+K VG    R I+EA  D+PF +L D   RV+ K+
Sbjct: 824  VAPCVNASLATFTVRDGAVVYALGALKNVGVEAMRLIVEARGDRPFATLFDMARRVELKR 883

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            + +R LE L  AGA D    +R ++ ++LD +  Y+  + + R +   ++F  E G    
Sbjct: 884  IGKRPLEMLARAGAFDALDRNRARVFEALDALVAYSAAIHEARNSSQVSLFG-EAGADIP 942

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNI 995
            +  L          R   E + +GFY SGHPLD Y   L++  +           RG  +
Sbjct: 943  EPRLPSRDDWLPVERLAQEHQAIGFYLSGHPLDDYMGALKRRNVTTLAALTDLAQRGPMV 1002

Query: 996  -RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +LA  V S+Q+KK+ KG+R  +V  S+P   YE   F
Sbjct: 1003 AKLAGAVSSRQEKKSAKGNRFAFVQLSDPTGLYECTVF 1040


>gi|303328214|ref|ZP_07358652.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. 3_1_syn3]
 gi|302861544|gb|EFL84480.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. 3_1_syn3]
          Length = 1159

 Score = 1088 bits (2813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1038 (39%), Positives = 607/1038 (58%), Gaps = 26/1038 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YSLL+GA+ + ++  +      PA AITD  N+F A  F       GI+P
Sbjct: 3    DFVHLHCHTEYSLLDGAIRIKDLCARAKDYGMPACAITDHGNMFGAAYFYAACKDFGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I GC++ +      K +   +        ++LL     GY  L++LVS  +L D      
Sbjct: 63   IFGCEVYVCHDHTDKTSELARRR----HHLILLAQNELGYHNLVKLVSHGFL-DGFYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L+    EGL  L+   +G I RA        A      +  ++  R Y+ LQ +
Sbjct: 118  RVDKELLRRYA-EGLTCLSACIAGEIPRAILAKDMDKALSLTREYADIYPGRFYLELQSN 176

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++    + ++++A T +LPLVATN+  +L+ +D +AH+VL+ +   T +    R R 
Sbjct: 177  GLAEQEVVNNALLEIAETADLPLVATNDCHYLNADDADAHEVLLCIQTQTTMDDPKRMRF 236

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + Y K+  EM   F+ +PEAL NT+ IA  C+  L       P +   E   +    
Sbjct: 237  ETHELYYKSIEEMEKPFAHVPEALANTMRIAETCNVELDFGHHYFPVYQLPEGASM---- 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+E R  A  GLE RL +    +      YR+RL +EL VI  M F GYFLIV +FI WA
Sbjct: 293  ESEFRRLAEEGLERRLEKHPDRENIDPARYRERLQYELGVILEMGFPGYFLIVQEFINWA 352

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K + IPVGPGRGS AGS+ A++L IT++DPL ++LLFERFLN +R+S+PD D+DFC+ RR
Sbjct: 353  KNHGIPVGPGRGSAAGSLVAWSLRITNLDPLPYNLLFERFLNNERVSLPDIDVDFCERRR 412

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +VIR++ + YG   VAQI TFG+++AK  +RDVGRAL M +++ DR+ KL+P+D    +
Sbjct: 413  GDVIRHMVDTYGEGSVAQITTFGTMKAKGVVRDVGRALGMTFAETDRIAKLVPDDLKMTI 472

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   R+    D  V  LL+ +++LEGL RHASTHAAG+V+ D+P+ + +P+Y 
Sbjct: 473  K-KALDLEPDLRKLYEEDQQVRHLLDTARRLEGLARHASTHAAGLVVSDKPMEEYLPLYL 531

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
              R +L VTQF+    EKAGL+KFDFLGLKT+TL+Q +LD ++ Q     DL  +P  D 
Sbjct: 532  GKRGEL-VTQFDGPMTEKAGLVKFDFLGLKTMTLIQDTLDNISLQGQTPPDLDNLPLTDA 590

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
            ETY L     T G+FQ+ESSGMRQ L  ++P C ED+IA+++LYRPGP+ + +V  +  R
Sbjct: 591  ETYELYARGDTDGVFQVESSGMRQYLRMLRPTCFEDVIAMLALYRPGPLGSGMVDEFIKR 650

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+  +V  H  +   L++T GVI+YQEQVMQIAQ+++ Y+L  AD+LRRAMGKK  E 
Sbjct: 651  KHGQVPVVYPHDSLTECLRDTYGVIVYQEQVMQIAQIIASYTLGGADLLRRAMGKKKAEA 710

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M K++  F++GA KNGI+K  A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K HY 
Sbjct: 711  MAKERVTFVAGAEKNGIAKEKANEIFDLMEKFAEYGFNKSHSAAYALISYFTAYLKVHYK 770

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEF+AA +T EM N +K+ K+    +   I ++ PSVN    +F     ++ + L  IK 
Sbjct: 771  VEFMAALLTSEMGNQDKLLKYVSCCKDMGIDVVQPSVNQSQREFTAHGGQVVFGLGGIKN 830

Query: 845  VGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG    R I+E   +   + SL D C RV+ +K+ +RVLESL+  GA DCF  SR  +L 
Sbjct: 831  VGDEAIREIVEGRKEGGDYISLLDLCCRVNLRKVTKRVLESLIKGGACDCFNVSRAGMLA 890

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-------TLEKFSVENSSVRFENEQ 956
            +L+ +   AQ   K++++   ++ A      +                     ++   E+
Sbjct: 891  ALEIVVARAQKKAKDKSSNQVSLLAMAPVVEAAPQPGVGLDCPEATLPEMEDDLKLRAEK 950

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRI 1015
              LGF+ + HPL  Y   +R++ +   E++     G  I  A +V S ++  T+ KG R+
Sbjct: 951  EALGFFLTSHPLQPYSREIRRLRLTTLEDARELFPGAEINCAVLVTSIKEVLTKSKGERM 1010

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +     E  FFP
Sbjct: 1011 AFVGVEDLTGHAEVTFFP 1028


>gi|152987648|ref|YP_001346883.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PA7]
 gi|150962806|gb|ABR84831.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa PA7]
          Length = 1185

 Score = 1088 bits (2813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1060 (39%), Positives = 611/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ +SL++G + +  +   +A    PA+A+TD +N+ S ++F + A  AGI+P
Sbjct: 16   SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 75

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  + +            +     +  + LL   A GY+ L EL+SR +   Q    +
Sbjct: 76   ICGADIWLA----------SREEDGPLSRLSLLAMNARGYRNLTELISRGWSEGQRNGEI 125

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   W+ +   EGLI L+    G I  A        AE  L  + ++F +R YV +QR 
Sbjct: 126  IIERDWV-KAAAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 184

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  D       V LA     PLVATN+  F+ +ED+EAH+  + +     +    RPR 
Sbjct: 185  SRVNDEEHLHAAVALASRCNAPLVATNDVRFIRQEDFEAHETRVCIGEGRTLDDPRRPRT 244

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+ +EM  +FSDLPEALENTVEIA+RC+  +Q+    LP F       I    
Sbjct: 245  YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 300

Query: 308  ENELRNKAVAGLEVR----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ LR+ +  GLE R    L +         Q Y  RL+FEL++I +M F GYFLIV DF
Sbjct: 301  DDYLRHASFEGLEERLEVLLPKDTPDYEARRQVYVDRLNFELDIIIQMGFPGYFLIVMDF 360

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 361  IKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFC 420

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + RD VI YV + YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP + 
Sbjct: 421  MEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 480

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +   R+   +D     + E++ KLEG+ R    HA G+VI    L+   
Sbjct: 481  GMTLE-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFS 539

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ + +         V++
Sbjct: 540  PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNI 599

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + 
Sbjct: 600  DFIPLDDKPTYALLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 659

Query: 659  VV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V  + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ+++GY+L  AD
Sbjct: 660  MVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGAD 719

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  FI G   NGI   +A NIF+L+ KFA YGFNKSH+AAY +
Sbjct: 720  MLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 779

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQTAW+KTH+P  F+AA +T +M N +K+    ++ R   ++I+ P VN     F V 
Sbjct: 780  VSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTVD 839

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D RI Y L AIKGVG      I E  A+  PF++L DFC RVD K++N+R LE+L+ AG
Sbjct: 840  DDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAG 899

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            ALD  G                +R  LL +++   + A+   ++  + H ++F       
Sbjct: 900  ALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEP 959

Query: 935  SDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               +     K        R + E+  LG Y +GHP+D Y+  +R+   +   E       
Sbjct: 960  EADVYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDT 1019

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++V+ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1020 Q--TVAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1057


>gi|288962247|ref|YP_003452542.1| DNA polymerase III subunit alpha [Azospirillum sp. B510]
 gi|288914513|dbj|BAI75998.1| DNA polymerase III subunit alpha [Azospirillum sp. B510]
          Length = 1167

 Score = 1087 bits (2812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 515/1051 (49%), Positives = 689/1051 (65%), Gaps = 36/1051 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F+HL+VHS+YSL EGA+ +  ++      Q PA+A+TDT NLF ALEF+  A  AG+QP
Sbjct: 5    DFIHLRVHSAYSLSEGAIKVKELVKLCLKQQMPAVAVTDTGNLFGALEFALAASDAGVQP 64

Query: 70   IIGCQLDIDM-QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG  L I                  T   +VLL    EGY+ L  LVS+ +L       
Sbjct: 65   IIGTVLGITRVGPAQTKPGLPGKAAATPDQLVLLCQNEEGYRNLAALVSKAFLESDPLAG 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++ L  L E  + GLI LTGG +G + R        +A   L   K+LF  RLYV LQR
Sbjct: 125  PQVALDAL-EGHSGGLIALTGGPAGSVGRLLHEGQKDLALDVLERLKRLFPGRLYVELQR 183

Query: 189  HRG-------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            H G        +   E  ++ LAY H LPLVATN+  F +E+ YEAHD L+ +A    +S
Sbjct: 184  HEGGRGQFAAVENAIEPALIDLAYAHGLPLVATNDCYFATEDMYEAHDALLCIAEGAYLS 243

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            Q DR R+TPDH  K+  EM  +F+DLPEA++NTV IARRCS++L+   PILP F      
Sbjct: 244  QDDRRRLTPDHRFKSAEEMRRLFADLPEAVDNTVAIARRCSYLLKPIKPILPPFAC---- 299

Query: 302  DIQKEEENELRNKAVAGLEVRLAQG-------AIAKGYHAQDYRQRLDFELNVIARMKFS 354
            +  + E++ELR ++ AGLE+RL +           +    + Y +RL+FEL+VI +MKF 
Sbjct: 300  EGGRTEDDELRAQSRAGLEMRLEKVVFTPEMTPEQREETRKTYFERLEFELDVIVKMKFP 359

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV+DFI+WAK  +IPVGPGRGSGAGSV A+ALTITD+DPLRF LLFERFLNP+R+S
Sbjct: 360  GYFLIVSDFIKWAKNEDIPVGPGRGSGAGSVVAWALTITDLDPLRFGLLFERFLNPERVS 419

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFDIDFCQDRR+EVIRYVQ KYG++RVAQIITFG LQA+A LRDVGR LQMPY QVD+
Sbjct: 420  MPDFDIDFCQDRREEVIRYVQKKYGYDRVAQIITFGKLQARAVLRDVGRVLQMPYGQVDK 479

Query: 475  LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            +CK++PN+PA+PV+LQ A+  +   R+AR +D +V  L++I+ KLEGLYRHASTHAAG+V
Sbjct: 480  ICKMVPNNPANPVTLQQALDSEEMLRQARDSDDTVRHLVDIALKLEGLYRHASTHAAGVV 539

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            IGDRPL +LVP+YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++D +    
Sbjct: 540  IGDRPLQELVPLYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKTAVDLI---P 596

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             K DL+ +P DD ++Y LL+     G+FQLESSGMR  L  ++P+ +EDIIALVSLYRPG
Sbjct: 597  EKPDLTTVPLDDEKSYQLLSRAEATGVFQLESSGMRDVLRRLKPNRLEDIIALVSLYRPG 656

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+DNI  Y   KNG+EK   +H  ++ +LKET G++IYQEQVMQIAQ+LSGYSL  AD+L
Sbjct: 657  PMDNIPKYIRVKNGEEKADYMHDSLEGILKETFGIMIYQEQVMQIAQVLSGYSLGGADLL 716

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKKIKEEMD Q++ F  GA   G+   +A  IF+ + KFA YGFNKSHAAAYA+++
Sbjct: 717  RRAMGKKIKEEMDNQRKIFCDGAEARGVKADLASMIFDQVMKFAGYGFNKSHAAAYALVA 776

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--- 830
            Y TA++K ++PVEF+AASMTL++ N +K+  F Q+  +  ++++ P +N     F V   
Sbjct: 777  YHTAYLKANHPVEFMAASMTLDLGNTDKLNVFRQELARLRVKLLTPDINKSDSIFGVEQL 836

Query: 831  --GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
              G   + Y+LAA+KGVG    + ++ E   + PF SL DF  R+D K +N+R LE+L  
Sbjct: 837  ADGSKAVRYALAAVKGVGLPAMKAVVEERRRNGPFRSLFDFARRLDLKTINKRQLENLAC 896

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN---KHENIFAHEKGTFSDKITLEKFS 944
            AGA D    +R Q+  +L+ I +YAQ     R +             G    +  + K  
Sbjct: 897  AGAFDGLNPNRAQVHAALETIIRYAQAEAAERDSGIGNLFGGGFGGGGGGLPEPEMPKVK 956

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-ATIRG--NNIRLAAMV 1001
                  + ++E   +GFY S HPLD Y   L +M +    E   A  +G     ++A ++
Sbjct: 957  DWEPLEKLKHEFGAIGFYLSAHPLDAYSGPLGRMKVVRSAELQTAIAKGGSTRYKMAGII 1016

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            VSK++K  + G+R  +V  S+    YE   F
Sbjct: 1017 VSKKEKTAKSGNRFAFVELSDATGGYEVTLF 1047


>gi|303241705|ref|ZP_07328202.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
 gi|302590706|gb|EFL60457.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
          Length = 1169

 Score = 1087 bits (2812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1067 (35%), Positives = 603/1067 (56%), Gaps = 63/1067 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA  + +++ +       +IAITD   ++  ++F ++A   GI+PI
Sbjct: 4    FVHLHVHTEYSLLDGANRIKDLIKRTKELGMDSIAITDHGVMYGVVDFYKEAVNNGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++    +      ++          +VLL     GY+ L+++VS  +         R
Sbjct: 64   LGCEVYTAKRTRH---DKQGVLDSDPGHLVLLAKDNRGYKNLMKIVSIGFTEG-FYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            I    L+   +EGLI L+   SG + +A   N  + A+K    +  +F     Y+ LQ +
Sbjct: 120  IDFEVLERY-SEGLIALSACLSGDVPKALMNNDFERAKKVSQRYNDIFGKGNFYLELQSN 178

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++    SQ+V+L+    +PLVATN++ +L +ED  AH+VL+ +     ++ +DR R 
Sbjct: 179  GIEEQKLVNSQLVKLSKETGIPLVATNDAHYLRKEDARAHEVLLCIQTGKNMNDEDRMRF 238

Query: 249  TPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            + + +  K+  EM  +F ++PEA++NTV+I   C+  L+     LP+F   +  D  K  
Sbjct: 239  STEDFYVKSPEEMADVFVNVPEAIQNTVKIGEMCNVELEFGKLHLPKFSIPDNKDAFK-- 296

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+     GL     +    K        +RL++EL+VI +M +  YFLIV DFI++A
Sbjct: 297  --YLKELCYEGLNRLFGECIEDK-------LERLEYELSVIKQMGYVDYFLIVGDFIKYA 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N IPVGPGRGS AGS+ AY L IT+IDPL+++LLFERFLNP+R++MPD DIDFC +RR
Sbjct: 348  KDNGIPVGPGRGSAAGSLVAYCLGITNIDPLKYNLLFERFLNPERVTMPDIDIDFCFERR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG ++V+QIITFG++ A+AA+RDVGRAL + YS+VD + K+IP      +
Sbjct: 408  QEVIDYVVRKYGEDKVSQIITFGTMAARAAIRDVGRALDIAYSEVDIVAKMIPMQIGMNI 467

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   +     D  +  +++ ++ LEG+ RHASTHAAG+VI   P+++ VP+ +
Sbjct: 468  G-KALEMNPELKAKYEQDNLIKDMIDTARLLEGMPRHASTHAAGVVISKDPITEYVPLQK 526

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDH 606
                +   TQF M  +E+ GL+K DFLGL+TLT+++ ++D +      K+D+  +  +D 
Sbjct: 527  --NDESVTTQFPMGQLEELGLLKMDFLGLRTLTVIRDAVDLVYENYNTKLDIDRLEMNDP 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              + ++    T G+FQLES+GM Q ++ +QP  +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 585  NVFKIIGEGKTSGVFQLESAGMTQFMKELQPTSLEDIIAGISLYRPGPMDQIPRYIKNKN 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                +   HPL++ +L  T G ++YQEQVMQI + L GYS+  +D++RRAM KK    M+
Sbjct: 645  VPAGVKYDHPLLENILNVTYGCMVYQEQVMQIVRDLGGYSMGRSDLVRRAMSKKKISVME 704

Query: 727  KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI             G  +NG+ + IA  IF+ +  FA Y FNKSHAAAYAV++Y
Sbjct: 705  QERKNFIHGIDDENGNIVVMGCVRNGVDEKIANKIFDEMMDFASYAFNKSHAAAYAVVAY 764

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTAW+K +YPVEF+AA +   + + +KI ++  + +  NI+++PP +N   + F V + +
Sbjct: 765  QTAWLKCYYPVEFMAALLNSFLGSSDKISQYVHECKVLNIEVLPPDINESQMKFTVVNGK 824

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + LAA+K VG    + ++ E   D  + S  DFC R+D K +N+R +ESL+ +GA D 
Sbjct: 825  IRFGLAAVKNVGEGAVKSVIDERRTDGNYRSFRDFCDRIDGKDVNKRCIESLIKSGAFDS 884

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-----------FSDKITLEK 942
             G  R +L+   + +      ++K       ++F    GT           + D+     
Sbjct: 885  MGVYRSRLIAVFEKMLDGIAQIKKRNMEGQLSLFELSMGTDDKVNSSETSFYEDEDIYPD 944

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK----------------GYEES 986
             +   + V    E+ +LG Y SGHPL  ++  L KM                     +++
Sbjct: 945  INEYPNKVLLSMEKEMLGLYISGHPLSEFEEELNKMVSLFSSELNVDANQSEEAYSLDDA 1004

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G N+ +  ++ SK+ K TR  + + ++T  +     E   FP
Sbjct: 1005 KNISDGMNVIVGGIITSKKTKTTRNNNLMAFLTLEDLYGMMEVIVFP 1051


>gi|160874613|ref|YP_001553929.1| DNA polymerase III subunit alpha [Shewanella baltica OS195]
 gi|160860135|gb|ABX48669.1| DNA polymerase III, alpha subunit [Shewanella baltica OS195]
 gi|315266854|gb|ADT93707.1| DNA polymerase III, alpha subunit [Shewanella baltica OS678]
          Length = 1157

 Score = 1087 bits (2812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1045 (39%), Positives = 603/1045 (57%), Gaps = 36/1045 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      AG
Sbjct: 2    SDPRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG    +          Q       + ++ ++     GYQ L +++S+ YL  Q  
Sbjct: 62   IKPIIGADFWM----------QVPGFEGELCALTIIAMNNVGYQNLTQIISQAYLRGQVA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V I   WL     EG+++L+G   G + +A    +S   E     ++  F DR ++ L
Sbjct: 112  GRVVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFLEL 170

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R     V LA    +P+VATN  +FL  ED++AH++ +A+     ++   R
Sbjct: 171  IRTGRPDEERYLHMAVILAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   YL++  EM  +F+D+P AL N+VEIA+RC+  ++++   LP F   +     
Sbjct: 231  PKKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYFLPNFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L + +  GLE RL         +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -SIEDFLVDCSRKGLEERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A   +   +E+   D  V  L+++ +KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  EPGMTL-AKAFEVEPALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-----LAQRGVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+      +      +
Sbjct: 525  FAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGREPI 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  I   D   + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  RIEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   +  RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     F 
Sbjct: 765  ALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFT 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+ A
Sbjct: 825  VDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICA 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            GALD  G  R  ++ +L    + A    K       ++F        D K    + +   
Sbjct: 885  GALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTPWP 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +  E E+  LG Y +GHP++ Y   L+       ++   T RG   + A +VV+ +  
Sbjct: 945  DKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATRVM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GS++G +T  + +   E   F
Sbjct: 1005 LTKRGSKMGLLTLDDKSARLEIMLF 1029


>gi|289208654|ref|YP_003460720.1| DNA polymerase III subunit alpha [Thioalkalivibrio sp. K90mix]
 gi|288944285|gb|ADC71984.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. K90mix]
          Length = 1159

 Score = 1087 bits (2812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1048 (40%), Positives = 606/1048 (57%), Gaps = 45/1048 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YSL++G + L  ++  +A    PA+A+TD  NLF  ++F + A A G
Sbjct: 6    HDPGFVHLRVHSEYSLIDGLVRLKPLVAAVAEKGMPAVAVTDHCNLFGLVKFYRAAIAQG 65

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +QPIIG            +  +      +V  + LL     GY+ L  L+SR +   Q K
Sbjct: 66   VQPIIGA----------DLLVRDARADGSVARMTLLAQNDPGYRNLTRLISRAWQEGQEK 115

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               RI   WL     EGLI L+GG  G +  +    +  +    L  + K F  R Y+ L
Sbjct: 116  GIPRIDAEWLDSAA-EGLIALSGGIDG-LFVSGSGVARVLTHDDLAPWLKRFPGRFYLEL 173

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R  R  +     Q +  A   ELP+VATN+  FL  ED+EAH+  + +   T +    R
Sbjct: 174  TRTERPGEEAWIEQALAAAEQFELPVVATNDVRFLKAEDFEAHEARVCIHDGTTLDDPSR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +   YL    EM   FSD+PEAL N+V IARRCS  L +   +LP F   E     
Sbjct: 234  PRRYSEHQYLATPQEMTERFSDIPEALANSVAIARRCSVSLTLGESVLPDFPVPEG---- 289

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               E+ LR  +  GLE RL +   A      +Y +RL  EL+VI +M F GYFLIVADFI
Sbjct: 290  YTVEDHLRETSAKGLEARLERFQFA---ERSEYEERLKLELDVICQMGFPGYFLIVADFI 346

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            QWAK N IPVGPGRGSGAGS+ AY L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DFC 
Sbjct: 347  QWAKDNGIPVGPGRGSGAGSLVAYVLGITDLDPLRYELLFERFLNPERVSMPDFDVDFCM 406

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            ++RD+VI YV  +YG ++V+QIIT G++ AKA +RD GR L   Y  VDR+ KLIP +  
Sbjct: 407  EKRDDVIDYVAERYGRDKVSQIITHGTMAAKAVVRDCGRVLGYGYGFVDRIAKLIPFELG 466

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+A+    +     D  V  ++++++KLEGL R+A  HA G+VI    L+   P
Sbjct: 467  MTLD-KALAESEDLKSQYDQDEEVRGIIDLARKLEGLTRNAGKHAGGVVIAPSALTDFSP 525

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV--KVDLSLIP 602
            +Y +      VT F+   +E  GL+KFDFLGL+TLT++  +++ + +     ++DL  +P
Sbjct: 526  LYCEDDGGSLVTHFDKDDVEAVGLVKFDFLGLRTLTIIDWAVENVRKMDPETRIDLDAVP 585

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD +T+ LL    T  +FQLES GM+  +  +QPD  EDIIALV+LYRPGP+ + +V  
Sbjct: 586  LDDPDTFKLLKAYQTTAVFQLESGGMKDLIRRLQPDSFEDIIALVALYRPGPLQSGMVDD 645

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + +RK+G+ ++   HP ++P+L+ T GVI+YQEQVMQIAQ+L+ Y+L  AD+LRRAMGKK
Sbjct: 646  FIDRKHGRAQVEYPHPDLEPILQPTYGVILYQEQVMQIAQVLANYTLGGADLLRRAMGKK 705

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM KQ++ F+ GA   G+ +  A  IF+L+ KFA YGFNKSH+AAYA+++YQTAW+K
Sbjct: 706  KPEEMAKQRQIFMEGALGRGVEEGTATYIFDLMEKFAGYGFNKSHSAAYALVAYQTAWLK 765

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSL 839
             HYP  F+AA ++ +MDN +K+    ++ R   ++++PP VN     F       + Y L
Sbjct: 766  AHYPAPFMAAVLSADMDNTDKVVGLIEECRNMGLEVLPPDVNQSDYRFTCRDAGTVVYGL 825

Query: 840  AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKGVG +    +++A A D PF  L D C RVD  KLN+RVLE+LV AGALD  G +R
Sbjct: 826  GAIKGVGESAIETLLKARAVDGPFHGLIDLCQRVDLSKLNKRVLETLVRAGALDAIGANR 885

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              LL  +      A+  E+N +    ++F         +   E         R   E+  
Sbjct: 886  ATLLNDIPTAVAAAEQTERNASLGVVDLFGDPAAAVVPES--ETLPEMEDDDRLRGEKET 943

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN--------------NIRLAAMVVSK 1004
            LG Y +GHP++ Y+  L+++    + E  A +                  +R+A +VV  
Sbjct: 944  LGLYLTGHPVERYRAELKRLTGSTFAELEAKLEQRPDEGGQQGRRGRQETVRIAGLVVGV 1003

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + + T+ G R+G  T  + +   E   F
Sbjct: 1004 RVRNTQNG-RMGIATLDDRSGRAEIVLF 1030


>gi|304409577|ref|ZP_07391197.1| DNA polymerase III, alpha subunit [Shewanella baltica OS183]
 gi|307303935|ref|ZP_07583688.1| DNA polymerase III, alpha subunit [Shewanella baltica BA175]
 gi|304352095|gb|EFM16493.1| DNA polymerase III, alpha subunit [Shewanella baltica OS183]
 gi|306912833|gb|EFN43256.1| DNA polymerase III, alpha subunit [Shewanella baltica BA175]
          Length = 1157

 Score = 1087 bits (2812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1045 (39%), Positives = 603/1045 (57%), Gaps = 36/1045 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      AG
Sbjct: 2    SDPRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG    +          Q       + ++ ++     GYQ L +++S+ YL  Q  
Sbjct: 62   IKPIIGADFWM----------QVPGFEGELCALTIIAMNNIGYQNLTQIISQAYLRGQVA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V I   WL     EG+++L+G   G + +A    +S   E     ++  F DR ++ L
Sbjct: 112  GRVVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFLEL 170

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R     V LA    +P+VATN  +FL  ED++AH++ +A+     ++   R
Sbjct: 171  IRTGRPDEERYLHMAVILAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   YL++  EM  +F+D+P AL N+VEIA+RC+  ++++   LP F   +     
Sbjct: 231  PKKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYFLPNFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L + +  GLE RL         +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -SIEDFLVDCSRKGLEERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A   +   +E+   D  V  L+++ +KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  EPGMTL-AKAFEVEPALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-----LAQRGVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+      +      +
Sbjct: 525  FAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGRKPI 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  I   D   + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  RIEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   +  RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     F 
Sbjct: 765  ALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFT 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+ A
Sbjct: 825  VDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICA 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            GALD  G  R  ++ +L    + A    K       ++F        D K    + +   
Sbjct: 885  GALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTPWP 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +  E E+  LG Y +GHP++ Y   L+       ++   T RG   + A +VV+ +  
Sbjct: 945  DKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATRVM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GS++G +T  + +   E   F
Sbjct: 1005 LTKRGSKMGLLTLDDKSARLEIMLF 1029


>gi|166032119|ref|ZP_02234948.1| hypothetical protein DORFOR_01822 [Dorea formicigenerans ATCC 27755]
 gi|166027842|gb|EDR46599.1| hypothetical protein DORFOR_01822 [Dorea formicigenerans ATCC 27755]
          Length = 1156

 Score = 1087 bits (2811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1047 (36%), Positives = 569/1047 (54%), Gaps = 39/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      ++AITD   +F  ++F + A A GI+P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKECVARVKELGMNSVAITDHGCMFGVIDFYRAARAQGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G +       +VLL    EGY  L+++VSR Y         
Sbjct: 62   ILGCEVYVAPGSRFDKEAVG-SGDDRYYHLVLLAENDEGYHNLMKIVSRGYTEG-YYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+ L  L+E   EG+I L+   +G + +              L ++++F     ++ LQ 
Sbjct: 120  RVDLELLREFH-EGIIALSACLAGEVQKNITRGMYSEGRAAALRYEEIFGKGNFFLELQD 178

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++      +++++    + LVATN+  +   ED  AHD+L+ +     ++ +DR R
Sbjct: 179  HGIPEQQTVNQALMRMSQETGIELVATNDIHYTYAEDARAHDILLCIQTGKKLADEDRMR 238

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM  +F    +ALENT +IA RC   ++     LP++   +       
Sbjct: 239  YEGGQYYIKSEEEMKKLFPYALQALENTQKIADRCDVEIEFGVTKLPKYDVPDG----LS 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GLE R           +QD + RLD+EL+VI +M +  YFLIV DFI +
Sbjct: 295  SWEYLNKLCYEGLERRYPN-------PSQDLKDRLDYELSVIHKMGYVDYFLIVWDFIHY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I VGPGRGSGAGS+ AY L IT IDP+++ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 348  ARSQKIMVGPGRGSGAGSIVAYCLEITSIDPIKYQLLFERFLNPERVSMPDIDVDFCYER 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG+L A+  +RDVGR + +PY+ VD + KLIP +    
Sbjct: 408  RQEVIDYVGRKYGADRVVQIVTFGTLAARGVIRDVGRVMDLPYAFVDNIAKLIPKELNIT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+   S  R++   DP V  L+++S +LEGL RH S HAAG+VI  +P+ + VP+ 
Sbjct: 468  LD-KALKTSSELRKSYEEDPQVKELIDMSMRLEGLPRHTSMHAAGVVISQKPVEEYVPLS 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                     TQF    +E+ GL+K DFLGL+TLT+++ +  F +     +++++ I FDD
Sbjct: 527  LGS-DGSVTTQFVATTLEELGLLKMDFLGLRTLTVIRDAEKFASYSSGKEININKINFDD 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                  + T  T G+FQLES+GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 586  KAVLDSIGTGKTDGVFQLESAGMKNFMKELKPQSLEDIIAGISLYRPGPMDFIPQYIKGK 645

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
               E I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D++RRAM KK  + M
Sbjct: 646  EHPELITYDCPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKADVM 705

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K+++ F+         G   NGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 706  AKERQNFVYGNPEEGVPGCIANGIDEKTANKIYDEMTDFAKYAFNKSHAAAYAVVSYQTA 765

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K +YPVE++AA MT  +DN  K+ ++    RQ  I+I+PP +N     F V +  I Y
Sbjct: 766  WLKYYYPVEYMAALMTSVIDNPGKVAEYIYSCRQMGIKILPPDINHGYSSFSVDNGSIRY 825

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAAIK +G    + I+    A+  F +L+DF  R+  K +N+R +E+ + +GA D  G 
Sbjct: 826  GLAAIKSIGRPVIKEIVAERKANGEFKNLKDFIERMSGKDINKRTIENFIKSGAFDELGG 885

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I       +KN       +F    E+      I L        S +   
Sbjct: 886  TRKQFMVIYVQILDQVNREKKNSMTGQMTLFDIVGEEQKSEFDIPLPNVGEYEKSTKLAF 945

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHP++ Y+   RK   K  ++              G    +  ++ SK  
Sbjct: 946  EKEVLGIYLSGHPMEEYEEQWRKGISKTTQDFQFDEELGFSRVSDGAAEIIGGIIASKTI 1005

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + ++T  +     E   FP
Sbjct: 1006 KYTKNNKTMCFLTIEDIMGSVEVVVFP 1032


>gi|51245515|ref|YP_065399.1| DNA polymerase III, alpha subunit [Desulfotalea psychrophila LSv54]
 gi|50876552|emb|CAG36392.1| related to DNA polymerase III, alpha subunit [Desulfotalea
            psychrophila LSv54]
          Length = 1199

 Score = 1087 bits (2811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1042 (40%), Positives = 632/1042 (60%), Gaps = 26/1042 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  F HL VH+ YSLL+GA+ L +++DK       ++AITD   ++ ALEF  KA  AGI
Sbjct: 25   SAGFTHLHVHTQYSLLDGAIRLPDLIDKCKEFGMDSVAITDHGAMYGALEFYTKAKKAGI 84

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+G +L I   D   M  Q K    T   IVLL     GYQ L+++ S     D    
Sbjct: 85   KPIVGSELYIAPGD---MREQKKINGQTAYHIVLLAMNKTGYQNLMKMASIA-QSDGFYY 140

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              RI ++ LQE   EG+I LT    G +           A K+      +FGDRLY  LQ
Sbjct: 141  KPRIDMAVLQEY-NEGIIALTACLHGQVPYLIMKGDMDGARKKAQELHDIFGDRLYFELQ 199

Query: 188  RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   ++    + +  LA    + LVATN+  +L+ ++  AH+VL+ +     ++  +R 
Sbjct: 200  ENSIAEQQPVNAGLKILAKEMGVKLVATNDCHYLNRQEAHAHEVLLCIQMGKTINDTNRF 259

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R + D  Y K+  EM   F   PEA+ +T EIA RC+  L       P F   E + +  
Sbjct: 260  RFSSDEFYFKSPKEMERAFHHCPEAIASTQEIADRCNLELTFDDYYFPNFPVPEGESLST 319

Query: 306  EEENELRNKAVAGLEVRLAQG---AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                        GLE R  +       K    + Y+ RL+ E++VI  M F GYFLIVAD
Sbjct: 320  ----MFTTACWEGLETRFEEMRALGSYKDNTEKTYKARLEMEIDVINTMGFPGYFLIVAD 375

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK  +IPVGPGRGSGAGS+ AYA+ IT+IDP+ + L+FERFLN +R SMPDFDIDF
Sbjct: 376  FINWAKSKDIPVGPGRGSGAGSIAAYAMKITNIDPMPYGLIFERFLNIERKSMPDFDIDF 435

Query: 423  CQDRRDEVIRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            CQDRR EVI YV+ KYG  E VAQIIT+GS++A+  +RDVGRAL +P+++VDR+ KL+P+
Sbjct: 436  CQDRRGEVIDYVRRKYGGAEHVAQIITYGSMKARGVIRDVGRALDIPFTEVDRIAKLVPD 495

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 + L+A+A++ + +EA   DP +  L+ +S+ LEGL RH S HAAG+VI   P++ 
Sbjct: 496  QLKMTL-LKALAEEPKLQEAADNDPQIQELISVSKTLEGLARHTSVHAAGVVISPEPMTH 554

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600
             +P  R   +D  VTQ++MK  E  GLIKFDFLGLKTLT++ K++  + A + + +++  
Sbjct: 555  YLPTCRGGEADERVTQYDMKHTEMTGLIKFDFLGLKTLTVIDKAVKHVHADKKIPLNIDA 614

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD +T+ LL     LG+FQLES GMR+ L  M P+   D+IALV+LYRPGP+D+ +V
Sbjct: 615  IPMDDPKTFDLLCRGDALGVFQLESEGMRELLVKMAPEQFSDLIALVALYRPGPLDSGMV 674

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   K+G+ +     P + P+L+ET GVI+YQEQVM+IA +L+ YSL +AD+LRRAMG
Sbjct: 675  DDFVETKHGRAEANYPLPQLKPVLEETYGVIVYQEQVMKIASILANYSLGDADILRRAMG 734

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KKI   MD++K +F+ GA KN +    A  +F+L+AKFA YGFNKSH+AAYA++SYQTA+
Sbjct: 735  KKIAAVMDEEKVKFMEGAEKNEVPLDKAEYVFDLMAKFAGYGFNKSHSAAYALVSYQTAY 794

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K H+P +F+AA ++ +M+N +K+ ++  + ++ +I+++PP +N    DF V ++RI + 
Sbjct: 795  LKAHHPAQFMAALLSCDMNNTDKVVRYINECKEQHIEVLPPDINESFKDFTVINDRIRFG 854

Query: 839  LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            +AA+K VG      I+E   AD P+ S+ DFC+RVDS+K+N RV+ESLV +G+ D  GY 
Sbjct: 855  MAAVKNVGGAALDSIIEERQADGPYTSISDFCNRVDSRKVNSRVIESLVKSGSFDSLGYK 914

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK------ITLEKFSVENSSVR 951
            R Q ++ L+   + A+ V++++ +   ++FA  + +   K      + +      +   +
Sbjct: 915  RSQFIEVLEKAMEQAKAVQRDKQSGQISLFAVAQPSAGQKDQEVNSLHMPDMEEWSDKQK 974

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               E+  +GFY +GHPLD   P L+ +      + V       +R+  +V + ++ +++K
Sbjct: 975  LLFEKETVGFYITGHPLDDVMPELKTIIDAQIHDLVDKDEDQAVRIGGLVRTYKKHRSQK 1034

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  + ++T  +  +  E   FP
Sbjct: 1035 GDAMAFITIEDIFEAVEVVVFP 1056


>gi|319775318|ref|YP_004137806.1| DNA polymerase III subunit alpha [Haemophilus influenzae F3047]
 gi|329122686|ref|ZP_08251264.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus aegyptius
            ATCC 11116]
 gi|317449909|emb|CBY86121.1| DNA polymerase III alpha subunit [Haemophilus influenzae F3047]
 gi|327472560|gb|EGF17990.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus aegyptius
            ATCC 11116]
          Length = 1159

 Score = 1087 bits (2811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1048 (39%), Positives = 604/1048 (57%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYDEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG            +  +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGA----------DVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGY 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 111  N-DLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    ++ R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNQERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP   T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +   
Sbjct: 229  KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL-- 286

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +      Y +RL  EL+VI +M F GYFLI
Sbjct: 287  ---STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +     Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A +VV+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAMTKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|77465552|ref|YP_355055.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides 2.4.1]
 gi|77389970|gb|ABA81154.1| DNA polymerase III alpha chain [Rhodobacter sphaeroides 2.4.1]
          Length = 1163

 Score = 1087 bits (2811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 516/1058 (48%), Positives = 676/1058 (63%), Gaps = 48/1058 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+VH+ YSLLEGA+ +  ++    A   PA+A+TDTN +F+ALEFS  A  
Sbjct: 1    MSNAPRFIHLRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPI+GCQ+ +  +        G+ P P  P +VLL  T  GY  L++L S +YL  +
Sbjct: 61   AGIQPIVGCQVSVAYET----AALGERPKPPAP-VVLLAQTETGYGNLMKLSSCLYL-GK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 ++  S L E   EGLI LTGG  GP+ R         AE  L     ++  RLYV
Sbjct: 115  EGALPQVTPSEL-ERHAEGLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYV 173

Query: 185  NLQRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             LQRH G        +R  E   V+LAY   LPLVATN+  F   E YEAHD L+ +A  
Sbjct: 174  ELQRHPGEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEG 233

Query: 238  TVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V Q   R R+TP HY K+ +EMV++F+DLPEA+ENTVEIARRC+F      PILPRF 
Sbjct: 234  AYVDQVAPRRRLTPQHYFKSEAEMVALFADLPEAVENTVEIARRCAFKAAKRPPILPRFA 293

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            + E +        ELR +A  GL  RLA   I      +DY  RL FEL +I +M F GY
Sbjct: 294  DDEVE--------ELRRQAKEGLAARLA--VIPHAAPVEDYEARLSFELGIIEQMGFPGY 343

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI+W K N IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 344  FLIVADFIKWGKANGIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMP 403

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL 
Sbjct: 404  DFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463

Query: 477  KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K+IP +   PVS+ +A+AD+ R REA   +  V RLL+   ++EGL R+ASTHAAG+VIG
Sbjct: 464  KMIPVEGVKPVSIQKALADEPRLREAAKTEEVVKRLLDYGMQIEGLLRNASTHAAGVVIG 523

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            DRPL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D +   G  
Sbjct: 524  DRPLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIRGTGRP 583

Query: 596  ------------------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
                               D+  IP +D  TY L     T+ +FQ+ESSGM  AL  M+P
Sbjct: 584  LHMAADGRVLYDPPPGAENDIGHIPLEDKATYELYAQAKTVAVFQVESSGMMDALRRMKP 643

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             CIEDI+ALV+LYRPGP++NI VY   K+G   + S+HP IDP+LKETQG+I+YQEQVMQ
Sbjct: 644  TCIEDIVALVALYRPGPMENIPVYCEVKHGLRDLESLHPTIDPILKETQGIIVYQEQVMQ 703

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKF 756
            IAQ++ GY+L  AD+LRRAMGKKI EEM K++ +FI GA K +GI    A  +F+LL KF
Sbjct: 704  IAQVMGGYTLGGADLLRRAMGKKIAEEMAKERPKFIEGAKKTHGIDAKKAGEVFDLLEKF 763

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M  ++   +K+  + ++  +  I+ 
Sbjct: 764  ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRT 823

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            + P VN     F V D  + Y+L A+K VG    R I+EA  D+PF +L D   RV+ K+
Sbjct: 824  VAPCVNASLATFTVRDGAVVYALGALKNVGVEAMRLIVEARGDRPFATLFDMARRVELKR 883

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            + +R LE L  AGA D    +R ++ ++LD +  Y+  + +   +   ++F  E G    
Sbjct: 884  IGKRPLEMLARAGAFDALDRNRARVFEALDALVAYSAAIHEALNSSQVSLFG-EAGADIP 942

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNI 995
            +  L          R   E + +GFY SGHPLD Y   L++  +           RG  +
Sbjct: 943  EPRLPSRDDWLPVERLAQEHQAIGFYLSGHPLDDYMGALKRRNVTTLAALTDLAQRGPMV 1002

Query: 996  -RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +LA  V S+Q+KK+ KG+R  +V  S+P   YE   F
Sbjct: 1003 AKLAGAVSSRQEKKSAKGNRFAFVQLSDPTGLYECTVF 1040


>gi|152999992|ref|YP_001365673.1| DNA polymerase III subunit alpha [Shewanella baltica OS185]
 gi|151364610|gb|ABS07610.1| DNA polymerase III, alpha subunit [Shewanella baltica OS185]
          Length = 1157

 Score = 1086 bits (2810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1045 (39%), Positives = 603/1045 (57%), Gaps = 36/1045 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      AG
Sbjct: 2    SDPRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG    +          Q       + ++ ++     GYQ L +++S+ YL  Q  
Sbjct: 62   IKPIIGADFWM----------QVPGFEGELCALTIIAMNNVGYQNLTQIISQAYLRGQVA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V I   WL     EG+++L+G   G + +A    +S   E     ++  F DR ++ L
Sbjct: 112  GRVVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFLEL 170

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R     V LA    +P+VATN  +FL  ED++AH++ +A+     ++   R
Sbjct: 171  IRTGRPDEERYLHMAVILAQDKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   YL++  EM  +F+D+P AL N+VEIA+RC+  ++++   LP F   +     
Sbjct: 231  PKKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYFLPNFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L + +  GLE RL         +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -SIEDFLVDCSRKGLEERLGFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A   +   +E+   D  V  L+++ +KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  EPGMTL-AKAFEVEPALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-----LAQRGVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+      +      +
Sbjct: 525  FAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGRKPI 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  I   D   + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  RIEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   +  RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     F 
Sbjct: 765  ALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFT 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+ A
Sbjct: 825  VDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICA 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            GALD  G  R  ++ +L    + A    K       ++F        D K    + +   
Sbjct: 885  GALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTPWP 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +  E E+  LG Y +GHP++ Y   L+       ++   T RG   + A +VV+ +  
Sbjct: 945  DKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATRVM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GS++G +T  + +   E   F
Sbjct: 1005 LTKRGSKMGLLTLDDKSARLEIMLF 1029


>gi|291280374|ref|YP_003497209.1| DNA polymerase III subunit alpha [Deferribacter desulfuricans SSM1]
 gi|290755076|dbj|BAI81453.1| DNA polymerase III, alpha subunit [Deferribacter desulfuricans SSM1]
          Length = 1160

 Score = 1086 bits (2810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1044 (39%), Positives = 614/1044 (58%), Gaps = 32/1044 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL +H+ YSLL+GA+ ++ ++ K+  +   A+AITD   ++  ++F  +A A  I
Sbjct: 2    SKDFVHLHLHTQYSLLDGAIHISELMQKLKENGSKAVAITDHGTMYGIVDFYTQALANDI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC++ +            K        +VLL  T  G + L  LVS+ ++      
Sbjct: 62   KPIIGCEVYVAPDSRFNKNYDKKE--DKNYHLVLLAQTNTGLKNLQYLVSKAHIEG-FYY 118

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
              RI    L +  ++GLI L+   +G   R       + A+K  L + ++   D  ++ +
Sbjct: 119  KPRIDKELLAK-HSKGLIALSACLAGEPARKLLNEGYEAAKKAALEYYEIMGKDNYFLEI 177

Query: 187  QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q +   ++     ++++++    +PLVATN+  FL+ EDY +H VLM + +   ++  +R
Sbjct: 178  QDNGINEQNLVNKKLIEISKETGIPLVATNDCHFLNREDYYSHQVLMCIQYQQTLNDPNR 237

Query: 246  -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                + + Y+K+  EM   F+++ EAL NTV+IA RC+  +      LP +   E     
Sbjct: 238  RDSHSSELYVKSPKEMWKSFNEVEEALINTVKIAERCNVSMTFGELHLPVYDVPEG---- 293

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L + +  GL  RLA+  +        Y +RL++EL +I    + GY+LIV DFI
Sbjct: 294  YTLKTYLEHISKEGLHKRLAKVPLELHSK---YYERLEYELKIIHEKGYDGYYLIVWDFI 350

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+KN IPVGPGRGSGAGS+ AYA+ ITDIDP+++ LLFERFLNP+R SMPDFDIDFC 
Sbjct: 351  NYARKNKIPVGPGRGSGAGSLVAYAVGITDIDPIKYKLLFERFLNPERKSMPDFDIDFCM 410

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI YV+NKYGH+RVAQIITFG L A+  +RDVGR L++P   VD++ K+IP  P 
Sbjct: 411  NRREEVIDYVRNKYGHDRVAQIITFGKLLARGVIRDVGRVLEIPLKTVDKIAKMIPEKPG 470

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  DS  +    +      LL+ + KLEGL R+A  HAAG+VI D+PL + VP
Sbjct: 471  LTLK-KALEMDSELKPNIESIEKGKELLDHALKLEGLLRNAGMHAAGVVIADKPLVEYVP 529

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            + +    ++ VTQF    +EK GL+KFDFLGLK LT++  +   + + +    D+S IP 
Sbjct: 530  LCKGQNDEV-VTQFEKDTLEKVGLVKFDFLGLKNLTVIDYASKLIRETKDSDFDISSIPL 588

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661
            DD +T+ LL++  T G+FQLESSGM+  L+ ++P   EDIIALV+LYRPGPI + +   +
Sbjct: 589  DDKKTFELLSSGETTGVFQLESSGMKNLLKKLKPTTFEDIIALVALYRPGPIGSGMLDDF 648

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK+G +++    P ++ +LKET G+I+YQEQVMQIAQ+++GYSL  AD+LRRAMGKK 
Sbjct: 649  VKRKHGLQEVTYPLPELEEILKETYGIIVYQEQVMQIAQIVAGYSLGSADLLRRAMGKKK 708

Query: 722  KEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
             EEM K +E F        I GA K G  + IA  IF+L+AKFA+YGFNKSH+AAYA++S
Sbjct: 709  PEEMAKHREIFLYGDEKLGIEGAVKRGFDEKIASEIFDLMAKFAEYGFNKSHSAAYAMVS 768

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K HYPVE++AA ++ E++  +K+  F  + ++  I+++ P +N    DF +  +
Sbjct: 769  YQTAYLKAHYPVEYMAALLSNELEKGDKVVGFIDECKKMGIKVLKPDINESFRDFIITGD 828

Query: 834  RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + L AIK VG      I++    +  + S+ D C RVD + +NR+VLESL+ AGALD
Sbjct: 829  SIRFGLGAIKNVGFGAIDEIIKERKTNGKYKSIYDLCKRVDLRTVNRKVLESLIKAGALD 888

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNK---HENIFAHEKGTFSDKITLEKFSVENSS 949
             FG +R Q LQ LD+  +  Q  ++ +       E+I         ++           +
Sbjct: 889  SFGKNRRQHLQVLDDAIESGQKEQQLKNEGIITIEDILKENGIDEIEEEHYPDVEEMPEN 948

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
               + E+ VLGFY + HPL  Y  IL     K   +   T   N I +  +V   +   T
Sbjct: 949  ELLKFEKEVLGFYLTNHPLVNYSNILDIFT-KRSSDIETTDENNLIMVGGIVKGVKNYIT 1007

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            +   R+ +VT  +     +   FP
Sbjct: 1008 KTNERMAFVTLEDLEGTMDVVVFP 1031


>gi|221369558|ref|YP_002520654.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides KD131]
 gi|221162610|gb|ACM03581.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides KD131]
          Length = 1163

 Score = 1086 bits (2810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 517/1058 (48%), Positives = 678/1058 (64%), Gaps = 48/1058 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+VH+ YSLLEGA+ +  ++    A   PA+A+TDTN +F+ALEFS  A  
Sbjct: 1    MSNAPRFIHLRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPI+GCQ+ +  +        G+ P P  P +VLL  T  GY  L++L S +YL  +
Sbjct: 61   AGIQPIVGCQVSVAYET----VALGERPKPPAP-VVLLAQTETGYGNLMKLSSCLYL-GK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 ++ LS L E   EGLI LTGG  GP+ R         AE  L     ++  RLYV
Sbjct: 115  EGALPQVTLSEL-ERHGEGLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYV 173

Query: 185  NLQRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             LQRH G        +R  E   V+LAY   LPLVATN+  F   E YEAHD L+ +A  
Sbjct: 174  ELQRHPGEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEG 233

Query: 238  TVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V Q   R R+TP HY K+ +EMV++F+DLPEA+EN+VEIARRC+F      PILPRF 
Sbjct: 234  AYVDQVAPRRRLTPQHYFKSEAEMVALFADLPEAVENSVEIARRCAFKAAKRPPILPRFA 293

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            + E +        ELR +A  GL  RLA   I      +DY  RL FEL +I +M F GY
Sbjct: 294  DDEVE--------ELRRQAKEGLAARLA--VIPHAAPVEDYEARLAFELGIIEQMGFPGY 343

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI+W K N IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 344  FLIVADFIKWGKANGIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMP 403

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL 
Sbjct: 404  DFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463

Query: 477  KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K+IP +   PVS+ +A+AD+ R REA   +  V RLL+   ++EGL R+ASTHAAG+VIG
Sbjct: 464  KMIPVEGVKPVSIQKALADEPRLREAAKTEEVVKRLLDYGMQVEGLLRNASTHAAGVVIG 523

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            DRPL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D +   G  
Sbjct: 524  DRPLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIRGTGRP 583

Query: 596  ------------------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
                               D+  IP +D  TY L     T+ +FQ+ESSGM  AL  M+P
Sbjct: 584  LHMAADGRVLYDPPPGAENDIGHIPLEDKATYELYAQAKTVAVFQVESSGMMDALRRMKP 643

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             CIEDI+ALV+LYRPGP++NI VY   K+G   + S+HP IDP+LKETQG+I+YQEQVMQ
Sbjct: 644  TCIEDIVALVALYRPGPMENIPVYCEVKHGLRDLESLHPTIDPILKETQGIIVYQEQVMQ 703

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKF 756
            IAQ++ GY+L  AD+LRRAMGKKI EEM K++ +FI GA K +GI    A  +F+LL KF
Sbjct: 704  IAQVMGGYTLGGADLLRRAMGKKIAEEMAKERPKFIEGAKKTHGIDAKKAGEVFDLLEKF 763

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M  ++   +K+  + ++  +  I+ 
Sbjct: 764  ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRT 823

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            + P VN     F V D  + Y+L A+K VG    R I+EA  D+PF +L D   RV+ K+
Sbjct: 824  VAPCVNASLATFTVRDGAVVYALGALKNVGVEAMRLIVEARGDRPFATLFDMARRVELKR 883

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            + +R LE L  AGA D    +R ++ ++LD +  Y+  + + R +   ++F  E G    
Sbjct: 884  IGKRPLEMLARAGAFDALDRNRARVFEALDALVAYSAAIHEARNSSQVSLFG-EAGADIP 942

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNI 995
            +  L          R   E + +GFY SGHPLD Y   L++  +           RG  +
Sbjct: 943  EPRLPSRDDWLPVERLAQEHQAIGFYLSGHPLDDYMGALKRRNVTTLAALTDLAQRGPMV 1002

Query: 996  -RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +LA  V S+Q+KK+ KG+R  +V  S+P   YE   F
Sbjct: 1003 AKLAGAVSSRQEKKSAKGNRFAFVQLSDPTGLYECTVF 1040


>gi|293390623|ref|ZP_06634957.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans D7S-1]
 gi|290951157|gb|EFE01276.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans D7S-1]
          Length = 1158

 Score = 1086 bits (2810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1046 (39%), Positives = 606/1046 (57%), Gaps = 38/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHLQVHS +S+++G   +  ++     +   A+ +TD  N    + F  +A ++G
Sbjct: 2    SQPRFVHLQVHSDFSMIDGIAKVKPLVKACVGNGMVAVGLTDFTNFCGLVRFYGEALSSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PII             +  Q          + LL    EGY+ +  L+S+ Y      
Sbjct: 62   VKPII----------GTDVLVQSALCGDEKFRLTLLAKNNEGYKNITLLLSKAY-ERGYA 110

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E    G+I+L+GG +G + +    ++    +  +  +++ F D  Y+ L
Sbjct: 111  DLPYIDQQWLVE-HRAGVIVLSGGVNGDVGKKLLRSNPDELKSAVDFYREFFPDHFYLTL 169

Query: 187  QRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R  +V ++LA   +LP+VATN+  FL  ED+EAH++ +A+     +    R
Sbjct: 170  TRTGRPDEERYIKVALELAEQQQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKR 229

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  T   Y ++  EM  +F+D+P ALENTV IA+RC+  +++    LP+F   +     
Sbjct: 230  PKLYTSQQYFRSEQEMCDLFADVPSALENTVLIAQRCNVTIRLGEYFLPQFPTGDL---- 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  -STEDYLVKRAKDGLEERLKVMFPDEKVRTERRPEYDERLQVELDVINQMGFPGYFLIVM 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 345  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D RD VI +V   YGH  V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 405  FCMDGRDRVIDHVAEMYGHGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPP 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + + +E   AD  V  ++++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 465  DPGMTL-AKAFEAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R  K      
Sbjct: 524  FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKPLV 583

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ ++PDC EDIIALV+L+RPGP+ 
Sbjct: 584  DINAIPLDDQQSFDVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQ 643

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 644  SGMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGG 703

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 704  ADLLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGGLAMKIFDLVEKFAGYGFNKSHSAAY 763

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT EMDN +KI     +  +  ++++PP +NT    F 
Sbjct: 764  ALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECMRMGLKVVPPDINTGKHHFS 823

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V +N    Y + AIKGVG      ++EA   D  F +L D C+RVD KK+NRR  ESL+ 
Sbjct: 824  VNENGEIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIK 883

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946
            +GA D  G  R  L Q+L++  + +    K+      ++F     T  + + +    +  
Sbjct: 884  SGAFDKLGPHRAALQQNLEDALRASDQHAKDEALGQVDMFGVLTETNEEVENSYANIAPW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                  + E+  LG Y S HP+  Y   L        +E V   RG     + +V+S + 
Sbjct: 944  TEKTILDGERETLGLYLSSHPVTRYLKELAHYSPVRLKELVPNYRGQMSTASGLVMSTRV 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+KG+ IG  T  + +   +   F
Sbjct: 1004 AVTKKGNHIGIATIDDRSGRLDLTLF 1029


>gi|126173703|ref|YP_001049852.1| DNA polymerase III subunit alpha [Shewanella baltica OS155]
 gi|125996908|gb|ABN60983.1| DNA polymerase III, alpha subunit [Shewanella baltica OS155]
          Length = 1157

 Score = 1086 bits (2809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1045 (39%), Positives = 603/1045 (57%), Gaps = 36/1045 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      AG
Sbjct: 2    SDPRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG    +          Q       + ++ ++     GYQ L +++S+ YL  Q  
Sbjct: 62   VKPIIGADFWM----------QVPGFEGELCALTIIAMNNVGYQNLTQIISQAYLRGQVA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V I   WL     EG+++L+G   G + +A    +S   E     ++  F DR ++ L
Sbjct: 112  GRVVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFLEL 170

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R     V LA    +P+VATN  +FL  ED++AH++ +A+     ++   R
Sbjct: 171  IRTGRPDEERYLHMAVILAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   YL++  EM  +F+D+P AL N+VEIA+RC+  ++++   LP F   +     
Sbjct: 231  PKKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYFLPNFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L + +  GLE RL         +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -SIEDFLVDCSRKGLEERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A   +   +E+   D  V  L+++ +KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  EPGMTL-AKAFEVEPALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-----LAQRGVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+      +      +
Sbjct: 525  FAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGRKPI 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  I   D   + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  RIEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   +  RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKHEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     F 
Sbjct: 765  ALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFT 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+ A
Sbjct: 825  VDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICA 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            GALD  G  R  ++ +L    + A    K       ++F        D K    + +   
Sbjct: 885  GALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTPWP 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +  E E+  LG Y +GHP++ Y   L+       ++   T RG   + A +VV+ +  
Sbjct: 945  DKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATRVM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GS++G +T  + +   E   F
Sbjct: 1005 LTKRGSKMGLLTLDDKSARLEIMLF 1029


>gi|291086960|ref|ZP_06345005.2| DNA polymerase III alpha subunit [Clostridium sp. M62/1]
 gi|291076483|gb|EFE13847.1| DNA polymerase III alpha subunit [Clostridium sp. M62/1]
          Length = 1197

 Score = 1086 bits (2809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1054 (36%), Positives = 582/1054 (55%), Gaps = 45/1054 (4%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +Y+    +F HL VH+ YSLL+ +  +  ++ +       ++AITD   ++  ++F + A
Sbjct: 37   EYM----AFTHLHVHTEYSLLDASSKIKELVARAKELGMDSLAITDHGVMYGVIDFYRAA 92

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              AGI+P++GC++ +                     ++LL    EGYQ L+++VS  ++ 
Sbjct: 93   REAGIKPVLGCEIYVAPGSRFDREIGAGE--DKYYHLILLAENNEGYQNLMKIVSTGFVE 150

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-R 181
                   R+    L+   + GLI L+   +G + R       +  +K  L ++ +FG+  
Sbjct: 151  G-FYYKPRVDFETLERY-SRGLICLSACLAGEVQRNLARGMYEEGKKAALRYQSIFGEGN 208

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ LQ H    +   +Q +++++    +PLVATN+  ++  ED ++HD+L+ +     V
Sbjct: 209  FFLELQDHGIPLQKTVNQGLLRMSQDTGIPLVATNDCHYIYREDEKSHDILLCIQTGKKV 268

Query: 241  SQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            + ++R R     +YLK+  EM SIF    EALENT +IA RC+  ++     +P+F    
Sbjct: 269  ADENRMRYEGGQYYLKSEEEMKSIFPYALEALENTHKIAERCNVEIEFGVTKIPQFDVP- 327

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 K     L      G   R               R+RLD+EL+VI  M +  YFLI
Sbjct: 328  ---GGKTSWEYLNELCEEGFRTRYPDDDGT-------LRKRLDYELSVIQSMGYVDYFLI 377

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI +A+ ++I VGPGRGS AGS+ +Y L ITDIDP+R++LLFERFLNP+R+SMPD D
Sbjct: 378  VWDFIHFARSHDIMVGPGRGSAAGSIVSYCLRITDIDPIRYNLLFERFLNPERVSMPDID 437

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC +RR EVI YV  KYG +RV QI+TFG+L AK  +RDVGR L MPY++ D + K+I
Sbjct: 438  IDFCFERRQEVIDYVVQKYGRDRVVQIVTFGTLAAKGVVRDVGRVLDMPYAKCDAVAKMI 497

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P D      L         REA  +DP +  L+++S++LEGL RH S HAAG+VI    +
Sbjct: 498  PGDLGMT--LDKALKTPELREAYDSDPEIKYLIDMSRRLEGLPRHTSMHAAGVVISRNKV 555

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
             + VP+ R        TQF M  +E+ GL+K DFLGL+TLT++Q ++    +   +K+DL
Sbjct: 556  DEYVPLSRAA-DGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVRQAEKTHHIKIDL 614

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + I ++D      L T    G+FQLESSGM+  ++ ++P+ +EDIIA +SLYRPGP+D I
Sbjct: 615  NKIDYNDKAVLESLGTGKNDGVFQLESSGMKSFMKELKPENLEDIIAGISLYRPGPMDFI 674

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y   KN +  I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D++RRAM 
Sbjct: 675  PKYLKGKNDRASITYDCPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMS 734

Query: 719  KKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            KK    M+K+++ F+         G   NGI +  A  I++ +  FA Y FNKSHAAAYA
Sbjct: 735  KKKAAVMEKERQNFVYGNPEEGVKGCIANGIDEKTANIIYDEMIDFAKYAFNKSHAAAYA 794

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            V+SYQTA++K +YPVEF+AA MT   DNV K+ ++    RQ  ++IMPP +N     F V
Sbjct: 795  VVSYQTAYLKYYYPVEFMAALMTSVKDNVSKVSEYILTCRQMGMKIMPPDINEGEGGFSV 854

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +  I Y L+A+K +G T    I++   +  PF SL DF  R+ +K++N+R +ES + +G
Sbjct: 855  SNGAIRYGLSALKSIGQTVVDEIVKERTERGPFVSLADFIDRMSNKEVNKRTIESFIKSG 914

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVEN 947
            ALD    +R Q       + +     +KN      ++F   +    +  +IT        
Sbjct: 915  ALDSLPGTRKQKFLVSAALLEQKNKEKKNSMEGQMSLFDFVEEEEKEQFQITFPDVGEYT 974

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAA 999
                   E+ +LG Y SGHPL+ Y  + +K       + +            G+ + +  
Sbjct: 975  KEELLAFEKEMLGVYVSGHPLEEYMDLWKKNVTAVSSDFIVDEEEGHAKVRDGSYVTIGG 1034

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            M+  K  K TR+   + ++T  + A   E   FP
Sbjct: 1035 MITEKTVKTTRQNKMMAFITVEDLAGTVEVLIFP 1068


>gi|251791881|ref|YP_003006601.1| DNA polymerase III subunit alpha [Aggregatibacter aphrophilus NJ8700]
 gi|247533268|gb|ACS96514.1| DNA polymerase III subunit alpha [Aggregatibacter aphrophilus NJ8700]
          Length = 1158

 Score = 1086 bits (2808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1046 (39%), Positives = 604/1046 (57%), Gaps = 38/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHLQVHS +S+++G   +  ++     +   A+A+TD  N    + F  +A ++G
Sbjct: 2    SQPRFVHLQVHSDFSMIDGIAKVKPLVKACVENNMVAMALTDFTNFCGLVRFYGEALSSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG            +  Q          + LL    EGY+ +  L+S+ Y      
Sbjct: 62   VKPIIGA----------DVLVQSDLCGEERFRLTLLAKNNEGYKNITLLLSKAY-ERGYA 110

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E    G+I+L+GG +G + +    +++   +  +  +++ F D  Y+ L
Sbjct: 111  DVPYIDQQWLVE-HRTGVIVLSGGVNGDVGKKLLRSNTDELKSAVDFYREFFPDHFYLTL 169

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        + LA   +LP+VATN+  FL E+D+EAH++ +A+     +    R
Sbjct: 170  TRTGRPDEEEYIQAALTLAEQTDLPVVATNDVCFLQEDDFEAHEIRVAIHDGYTLEDPKR 229

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   T   Y ++  EM  +F+D+P ALENT+ IA+RC+  +++    LP+F   +     
Sbjct: 230  PKNYTGQQYFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGEYFLPQFPTGDL---- 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  -STEDYLVKRAKEGLEERLKVLFPDEKVRTERRPEYDERLQVELDVINQMGFPGYFLIVM 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 345  EFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 405  FCMDGRDRVIEHVAEMYGRGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPP 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + + +E   AD  V  ++++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 465  DPGMTL-AKAFEAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R  K      
Sbjct: 524  FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKPLV 583

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DDH+++ +L    T  +FQLES GM+  ++ ++PDC EDIIALV+L+RPGP+ 
Sbjct: 584  DINTIPLDDHQSFEVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQ 643

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 644  SGMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGG 703

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 704  ADLLRRAMGKKKPEEMAKQRSVFEEGAIKNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAY 763

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT EMDN +KI     +  +  ++++PP +NT    F 
Sbjct: 764  ALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECMRMGLKVVPPDINTGKHHFS 823

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V +N    Y + AIKGVG      ++EA   D  F +L D C+RVD KK+NRR  ESL+ 
Sbjct: 824  VNENGEIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIK 883

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946
            +GA D  G  R  L ++L++  + +    K+      ++F     T  + + +    +  
Sbjct: 884  SGAFDKLGPHRAALQRNLEDALRASDQHAKDEALGQTDMFGVLTETNEEVEHSYANIAPW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                  + E+  LG Y S HP+  Y   L        +E     RG     + +VV+ + 
Sbjct: 944  TEKTILDGERETLGLYLSSHPVSRYLKELSHYSPVRLKELTPNYRGQMSTASGLVVNTRI 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+KG+ IG  T  + +   +   F
Sbjct: 1004 AVTKKGNHIGIATIDDRSGRLDLTLF 1029


>gi|331086727|ref|ZP_08335804.1| hypothetical protein HMPREF0987_02107 [Lachnospiraceae bacterium
            9_1_43BFAA]
 gi|330409893|gb|EGG89328.1| hypothetical protein HMPREF0987_02107 [Lachnospiraceae bacterium
            9_1_43BFAA]
          Length = 1158

 Score = 1086 bits (2808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1048 (35%), Positives = 577/1048 (55%), Gaps = 41/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   +F  ++F + A AAGI P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMFGVIDFYRAAKAAGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G         +VLL    +GYQ L+++VS+ ++        
Sbjct: 62   ILGCEVYVAPGSRFDHEINGGE--DRYYHLVLLAENNQGYQNLMKIVSKGFVEG-YYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI +  L+E   EG+I L+   +G + +       + A++  L ++ +F     ++ LQ 
Sbjct: 119  RIDIELLEEYH-EGIIALSACLAGEVQKNLLRGMFEEAKQAALRYESIFGKGNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     ++++LA    + LVATN+  +   ED + HD+L+ +     ++ ++R R
Sbjct: 178  HGLTEQADVNQRLIRLAAETGIELVATNDVHYTYAEDEKPHDILLCIQTGKKLTDENRMR 237

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM+ +F    +ALENT +IA RC   ++     LP++           
Sbjct: 238  YAGGQYYVKSEQEMIELFPYARQALENTQKIADRCHVEIEFGVTKLPKYDVPGGM----T 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GLE R            ++ ++RL +EL+ I  M +  YFLIV DFI++
Sbjct: 294  SWEYLNQLCFEGLERRYPN-------PGEELKERLFYELSTIKNMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ N+I VGPGRGS AGS+ +Y L IT+IDP+R+ LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 347  ARDNDISVGPGRGSAAGSIVSYCLGITNIDPIRYQLLFERFLNPERVSMPDIDIDFCFER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG++ A+  +RDVGR + +PY+ VD + K+IP +    
Sbjct: 407  RQEVIDYVVRKYGKDRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDTIAKMIPTELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +  FR+    D  V  L+++S++LEGL RH S HAAG+VI  + + + VP+ 
Sbjct: 467  ID-KALKMNPEFRKMYETDEQVKYLIDMSKRLEGLPRHTSMHAAGVVISQKSVDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            R        TQF M  +E+ GL+K DFLGL+TLT++Q +++ + Q  GVK+D+  I ++D
Sbjct: 526  RAS-DGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVNLVEQATGVKLDMGEIDYND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                  + T  T G+FQLES+GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 585  KLVLDSIGTGKTDGVFQLESAGMKNFMKELKPQSLEDIIAGISLYRPGPMDFIPQYIKGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N K  I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK  + M
Sbjct: 645  NDKGSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKADVM 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +++++ F+         G   NGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 705  ERERQSFVYGNIDEGVPGCLNNGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YP+EF+AA MT  ++N  K+ ++   ARQ  I+I+PP +N     F V +  I Y
Sbjct: 765  YLKYYYPIEFMAALMTSVIENPTKVSEYIYAARQMGIKILPPDINRGVSGFSVDEGNIRY 824

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKL-NRRVLESLVFAGALDCFG 895
             LAAIK +G      I+ E   +  +  L+DF  R+  K++ N+R +E+ + AGALD  G
Sbjct: 825  GLAAIKSIGKPVIEAIVSEREENGLYRGLKDFIERISLKEMLNKRSIENFIKAGALDNLG 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFE 953
             +R Q +     I       +K   +   ++F    E      +I L             
Sbjct: 885  GTRKQFMMIYIQIVDNVNQEKKFSMSGQMSLFDFVDEDQKKEFEIQLPDVGEYEKETLLA 944

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQ 1005
             E+ VLG Y SGHPLD Y+   +K       +              G    +  M+V K 
Sbjct: 945  FEKEVLGVYISGHPLDAYEEQWKKSVSATTLDFQLDEETNRTKVHDGAKEIIGGMIVGKT 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K T+    + ++T  +     E   FP
Sbjct: 1005 IKHTKTNQMMAFITVEDLLGTVEVVVFP 1032


>gi|227357235|ref|ZP_03841592.1| DNA polymerase III, alpha chain [Proteus mirabilis ATCC 29906]
 gi|227162498|gb|EEI47487.1| DNA polymerase III, alpha chain [Proteus mirabilis ATCC 29906]
          Length = 1144

 Score = 1086 bits (2808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1032 (39%), Positives = 601/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K+A+   PA AITD  NL   ++F   A  AGI+PI+G  + ++ + 
Sbjct: 1    MIDGLAKTGPLVKKVASLGMPAFAITDFTNLCGLVKFYGAAHGAGIKPIVGADVYLETE- 59

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                             + +L     GYQ L  L+S  Y    G     I   WL     
Sbjct: 60   ---------LLGDEYAHLTILARDNVGYQNLTLLISEAYKHGYGAAGPVIKQEWLTTY-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGL++L+GG  G + +     +  + E+ L  ++  F D  Y+ L R    D      + 
Sbjct: 110  EGLLLLSGGRMGDVGKFLLRGNRALVEQCLEYYQTHFPDSYYLELIRTGRPDEESYLHEA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V LA    LP+VATN+  FL  +D++AH++ +A+     +S   RP   +P  Y++   E
Sbjct: 170  VALASEKGLPVVATNDVRFLDSDDFDAHEIRVAIHDGFTLSDPKRPKHYSPQQYMRTEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEALEN+VEIA+RC+  +++    LP+F   +        E+ L  K+  GL
Sbjct: 230  MCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPTGDM-----STEDFLIKKSKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDPQEREKRRPEYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD VI +V +
Sbjct: 345  GRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A A + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFAAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  QLPEIYEADEEVKSLIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDPEGNNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        VD+S I   D  ++ +
Sbjct: 524  QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKSLEPVDISAISLTDQRSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + +   + +RK+G E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGVE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVKWQHESLQPVLEPTYGVILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F +GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEAGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V D     Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  + D C+R ++KKLNRRV+E L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIVEARQQGGHFKDIFDLCARTETKKLNRRVMEKLIMSGAFDKLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL++  K A    K       ++F    +     + +          V  E E+  LG 
Sbjct: 884  SSLEDALKAADQHAKAEAIGQSDMFGVLAEAPEQVERSYANVPKWPDQVVLEGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP+  Y   + +       ++ V T RG  +++A +V++ +   T++G+RIG  T 
Sbjct: 944  YLTGHPITRYLKEIERYAAGTRLKDLVPTPRGQMVKVAGLVLASKVFTTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEIMLF 1015


>gi|330807796|ref|YP_004352258.1| DNA polymerase III alpha subunit [Pseudomonas brassicacearum subsp.
            brassicacearum NFM421]
 gi|327375904|gb|AEA67254.1| DNA polymerase III alpha subunit [Pseudomonas brassicacearum subsp.
            brassicacearum NFM421]
          Length = 1173

 Score = 1086 bits (2808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1060 (40%), Positives = 607/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  AGI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +  +D          P   +  I LLV  A GY+ L EL+SR ++  Q   S+
Sbjct: 64   ICGADLWLSNKD----------PDAPLSRISLLVMNALGYRNLTELISRGFIDGQRNGSI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ E  +EGLIML+    G I  A    + + AE     +  +F DR Y+ +QR 
Sbjct: 114  IIEREWVAE-ASEGLIMLSAAKEGEIGLALLSGNPEEAETLARDWMSVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +R  D       V LA     PLVATN+  F+ ++D+EAH+  + +     +    R   
Sbjct: 173  NRPNDEEHLHAAVALADKIGAPLVATNDVRFIKQDDFEAHETRVCIGEGRALDDPRRSKN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSNQQYLKSAEEMAELFSDLPEALENTVEIAKRCNIDVKLGKHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRL-----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RL                Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVD 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +         +D
Sbjct: 528  SPIYCDEEGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G + NGI   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIEGCATNGIDPDLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F V
Sbjct: 768  LVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTV 827

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  RI Y L AIKGVG      I EA  D PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  NDEGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            ALD  G                +R  LL +++   K A+   +   + H ++F       
Sbjct: 888  ALDRLGPYFQDEPKAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLFVEE 947

Query: 935  SDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               +     K        R + E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  DADVYGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A M+++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 Q--TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045


>gi|146279950|ref|YP_001170108.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides ATCC 17025]
 gi|145558191|gb|ABP72803.1| hypothetical protein Rsph17025_3949 [Rhodobacter sphaeroides ATCC
            17025]
          Length = 1163

 Score = 1086 bits (2808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 514/1058 (48%), Positives = 675/1058 (63%), Gaps = 48/1058 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+VH+ YSLLEGA+ +  ++    A   PA+A+TDTN +F+ALEFS  A  
Sbjct: 1    MSNAPRFIHLRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPI+GCQ+ +  +        G+   P  P +VLL     GY  L++L S +YL  +
Sbjct: 61   AGIQPIVGCQVSVAYET----AALGERAKPPAP-VVLLAQNEAGYGNLMKLSSCLYL-GK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 ++ L  L E    GLI LTGG  GP+ R         AE  L     ++  RLYV
Sbjct: 115  EGALPQVTLEEL-ERHASGLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYV 173

Query: 185  NLQRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             LQRH G        +R  E   V+LAY   LPLVATN+  F   E YEAHD L+ +A  
Sbjct: 174  ELQRHPGEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEG 233

Query: 238  TVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V Q   R R+TP HY K+ +EMV++F+DLPEA+ENTVEIARRC+F      PILPRF 
Sbjct: 234  AYVDQVAPRRRLTPQHYFKSEAEMVALFADLPEAVENTVEIARRCAFKAAKRPPILPRFA 293

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            + E +        ELR +A  GL  RLA   I      +DY  RL FEL +I +M F GY
Sbjct: 294  DDEVE--------ELRRQAKGGLAARLA--VIPHAAPVEDYEARLAFELGIIEQMGFPGY 343

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI+W K N IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 344  FLIVADFIKWGKANGIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMP 403

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL 
Sbjct: 404  DFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463

Query: 477  KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K+IP +   PVS+ +A+AD+ R REA   +  V RLL+   ++EGL R+ASTHAAG+VIG
Sbjct: 464  KMIPVEGVKPVSIQKALADEPRLREAAKTEEVVKRLLDYGMQVEGLLRNASTHAAGVVIG 523

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            DRPL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D +   G  
Sbjct: 524  DRPLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIRGTGRP 583

Query: 596  ------------------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
                               D+  IP +D   Y L     T+ +FQ+ESSGM  AL  M+P
Sbjct: 584  LHMAADGRVLYDPPPGAENDIGHIPLEDKAAYELYAQAKTVAVFQVESSGMMDALRRMKP 643

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             CIEDI+ALV+LYRPGP++NI VY   K+G  ++ S+HP IDP+LKETQG+I+YQEQVMQ
Sbjct: 644  TCIEDIVALVALYRPGPMENIPVYCEVKHGLRELESLHPTIDPILKETQGIIVYQEQVMQ 703

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKF 756
            IAQ+++GY+L  AD+LRRAMGKKI EEM K++ +FI GA K +GI    A  +F+LL KF
Sbjct: 704  IAQVMAGYTLGGADLLRRAMGKKIAEEMAKERPKFIEGAKKTHGIDTKKAGEVFDLLEKF 763

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M  ++   +K+  + ++  +  I+ 
Sbjct: 764  ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRT 823

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            + P VN     F V D  + Y+L A+K VG    R I+EA  D+PF +L D   RV+ KK
Sbjct: 824  VAPCVNASLATFTVRDGAVVYALGALKNVGVEAMRLIVEARGDRPFATLFDMARRVELKK 883

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            + +R LE L  AGA D    +R ++ ++LD +  Y+  + + R +   ++F  E G    
Sbjct: 884  IGKRPLEMLARAGAFDALDRNRARVFEALDALVSYSAAIHEARNSSQVSLFG-EAGADIP 942

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNI 995
            +  L          R   E + +GFY SGHPLD Y   L++  +           RG  +
Sbjct: 943  EPRLPSRDDWLPVERLAQEHQAIGFYLSGHPLDDYMGALKRRNVTTLAALTDLAQRGPMV 1002

Query: 996  -RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +LA  V S+Q+KK+ KG+R  +V  S+P   YE   F
Sbjct: 1003 AKLAGAVSSRQEKKSAKGNRFAFVQLSDPTGLYECTVF 1040


>gi|319407174|emb|CBI80813.1| DNA polymerase III alpha subunit [Bartonella sp. 1-1C]
          Length = 1140

 Score = 1085 bits (2807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 575/1022 (56%), Positives = 742/1022 (72%), Gaps = 8/1022 (0%)

Query: 17   HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
            HS+YSLLEGAL +  I+    +D+ PAIAITDTNNLF ALEFSQ   + GIQPIIGCQL 
Sbjct: 2    HSAYSLLEGALKIKQIIQHAISDRMPAIAITDTNNLFGALEFSQYCFSDGIQPIIGCQLA 61

Query: 77   IDMQDNLKMTNQGKTPFP-TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            ID  D    +   K        SIVL  ++  GY  L+ LVSR YL         I   +
Sbjct: 62   IDFGDENCNSPLTKLRHSSDYSSIVLFAASETGYSHLVRLVSRAYLDKNDTDLPHIKADF 121

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY 195
            L     EG+I LTGG  GPI+ A   +  + A +RL   KK+FGDRLY+ LQRH  YDR 
Sbjct: 122  LLR-HHEGIIALTGGPGGPINSALTEDKKERAIERLTYLKKIFGDRLYIELQRHGSYDRK 180

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
             E  +++LAYT+E+PLVATN + FL++E Y AHD LMAVA   VVS  +R RVT DHYLK
Sbjct: 181  VEEALIELAYTYEIPLVATNEAFFLNKEGYAAHDALMAVAEGKVVSNPNRKRVTLDHYLK 240

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD--IQKEEENELRN 313
            ++ EMVS+F DLPEALEN+VEIA RC     +  PILP FIE+  D   + + E  EL +
Sbjct: 241  SQDEMVSLFFDLPEALENSVEIALRCHAYAPIRKPILPGFIERSADTSSVLEAEAKELLD 300

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            +A AGL++RL    +A+GY   DY QRL++E++VI RM+FSGYFLIV+DFI+WAK ++IP
Sbjct: 301  QAKAGLKMRLETIGLAEGYTIADYEQRLNYEISVITRMQFSGYFLIVSDFIKWAKAHDIP 360

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+RR+EVIRY
Sbjct: 361  VGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDFCQERREEVIRY 420

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAI 492
            VQ KYG ++VAQIITFG LQA+A LRDVGR L++PY  VD L KL+P  P   + L QAI
Sbjct: 421  VQQKYGCDQVAQIITFGKLQARAVLRDVGRVLEVPYRLVDYLTKLVPATPGSNIELAQAI 480

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
             D+ +F E +  DP + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVPMYRD RSD
Sbjct: 481  IDEPKFEEEKKKDPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVPMYRDPRSD 540

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
            +PVTQFNMK++E++GL+KFDFLGLKTLT+L+ ++DF+A++G KVDLS IP +D  TY ++
Sbjct: 541  MPVTQFNMKYVEQSGLVKFDFLGLKTLTVLKMAVDFVARKGTKVDLSHIPLNDEATYAMM 600

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN RK+ +E+I 
Sbjct: 601  SRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENISTYNIRKHKEEEIT 660

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
            SIHP ID ++KETQGVI+YQEQVMQIAQ L+GYSL EAD+LRRAMGKKI +EM +Q+ RF
Sbjct: 661  SIHPKIDHLVKETQGVIVYQEQVMQIAQELAGYSLGEADLLRRAMGKKIHKEMQEQRARF 720

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            +SGA   G+ K  A  IF+LLAKFADYGFNKSHA AYA++SY TA+MK H+PVEFLAASM
Sbjct: 721  VSGAVDGGLDKEQANVIFDLLAKFADYGFNKSHATAYAIVSYHTAYMKAHHPVEFLAASM 780

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            T +M N +K+  F ++A +  I+++ P V T    F+VG+N IYYSL+A+KGVG     H
Sbjct: 781  TYDMTNTDKLNDFRREALRLGIEVIAPCVQTSHRIFEVGENCIYYSLSAVKGVGDMVVDH 840

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            I+    DKPF  LEDFC R+D + +N+R +ESL++AGA DCF  +R  LL SL  +   A
Sbjct: 841  IVACRGDKPFRDLEDFCERIDPRIVNKRAMESLIYAGAFDCFNVAREVLLASLVTLNARA 900

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              +  N ++   +IF    G   + + L + S  + + +   E +V+GFYFS HPL  Y+
Sbjct: 901  LRILDNNSSGQVDIF-EMVGGLKEPLILSQASPWSVAEKLHYEFQVIGFYFSAHPLSEYQ 959

Query: 973  PILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L K  ++ +    A+++G     RLA  VV+KQ +KT+ G ++G + FS+ + +YEA 
Sbjct: 960  DVLIKKRVQTWNNFAASVKGGATAARLAGTVVAKQIRKTKSGKKMGVIQFSDTSGQYEAV 1019

Query: 1031 FF 1032
             F
Sbjct: 1020 IF 1021


>gi|56695561|ref|YP_165911.1| DNA polymerase III subunit alpha [Ruegeria pomeroyi DSS-3]
 gi|56677298|gb|AAV93964.1| DNA polymerase III, alpha subunit [Ruegeria pomeroyi DSS-3]
          Length = 1187

 Score = 1085 bits (2806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 509/1078 (47%), Positives = 693/1078 (64%), Gaps = 68/1078 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL++H+ YSLLEGA+ L  +         PA+A+TDTNNLF+ALEFS  A  
Sbjct: 1    MSSNPRFIHLRLHTEYSLLEGAVRLKKLPALCDKMGMPAVAVTDTNNLFAALEFSVGASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPIIGCQLD+           G+ P P  P +VLL     GY+ L++L S +Y+ D+
Sbjct: 61   AGIQPIIGCQLDLAY----VAAMPGERPKPPAP-LVLLAQNEAGYENLMKLNSCLYV-DK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q  ++ L  L+ +G  GLI L+GG  GP+ R         AE  +     +F DR Y+
Sbjct: 115  GGQLPQVTLEELEALGD-GLICLSGGPDGPVGRLLQAGQRPAAEALVDRLAAIFADRFYI 173

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       +R  E   V++AY   LPLVATN+  F     YEAHD L+ +A   
Sbjct: 174  ELQRHPGEGGAPEAERLTERGHVEMAYAKGLPLVATNDVYFPEAGMYEAHDALICIADGA 233

Query: 239  VVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q   R R+T  HYLK+  EM ++F+DLPEA+ENTVEIARRC+F+     PILP+F +
Sbjct: 234  YVDQAEGRRRLTAQHYLKSPQEMATLFADLPEAIENTVEIARRCAFMAYRRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E          ELR +A  GL+ RLA   I     A+DY++RLDFEL++I  M F GYF
Sbjct: 294  DEVV--------ELRRQANEGLQARLA--VIPHAVSAEDYQKRLDFELDIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+ +A+ D+ R RE    +  VDRLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALKDEPRLREEARNEEVVDRLLTYGQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G   
Sbjct: 524  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFKSGRPL 583

Query: 596  -----------------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               ++ IP DD  TY L +   T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  HVAADGRQLYDPAEGAENQINAIPLDDVPTYKLYSAAKTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG  +I S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPVYCEVKNGLREITSVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKIKE MD ++ +F +GA++NG+    A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFETGAAENGVDAKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R+   +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLGLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-------------------- 857
            PP VN     F V    + Y+L A+K VG    R ++E                      
Sbjct: 824  PPCVNRSQATFDVVGGELVYALGALKNVGVEAMRLVVEGRQGAHPPEPASSRDAARRPDR 883

Query: 858  -ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
              ++PF +L DF  RVD KK+ +R LE +  AGA D    +R ++  S++ +  Y+  + 
Sbjct: 884  AEERPFVTLFDFARRVDLKKVGKRPLEMMARAGAFDQLDPNRRRVFDSIEALMAYSGAIF 943

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            + +++   ++F  E G    +  L +      + R   E + +GFY SGHPLD Y P L+
Sbjct: 944  EQKSSNQVSLFG-EAGDDLPEPRLAQAPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALK 1002

Query: 977  KMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + G+   +E     R   +  ++A +V  +Q++K+ +G+R  +   S+P   +E   F
Sbjct: 1003 RKGVLTLDEVTEQARSGPVLAKMAGVVAGRQERKSARGNRFAFAQMSDPTGAFEVTLF 1060


>gi|144899840|emb|CAM76704.1| DNA polymerase III alpha subunit [Magnetospirillum gryphiswaldense
            MSR-1]
          Length = 1159

 Score = 1085 bits (2806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 501/1048 (47%), Positives = 685/1048 (65%), Gaps = 31/1048 (2%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +     FVHL+ H++YSL EGA+ L  ++        PAI I DT NLF ALEFS    
Sbjct: 5    AMPIHADFVHLRTHTAYSLSEGAIKLKQLIKLCEKQMMPAIGIADTGNLFGALEFSTSCA 64

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGIQPIIGCQ+ +  ++       G+ P P    +VLL  +  GY  L++LVS+ YL  
Sbjct: 65   DAGIQPIIGCQVAV-RREGEAPARDGRKPDPD--WLVLLCQSETGYANLLKLVSKAYLET 121

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
               ++ ++ L  L E  + GLI+LTGG  GP++R      +  AE  L+   + F  R Y
Sbjct: 122  DAGETPQVTLHDL-ETRSAGLILLTGGPKGPVNRLLADGQNDKAEILLVRLAQGFPGRAY 180

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            V LQRH   +  R E  +V LAY H+LPLVATN   F     YEAHD L+ +A    V+Q
Sbjct: 181  VELQRHGEENENRAEPGLVNLAYKHDLPLVATNEPFFADRGMYEAHDALICIAEGAYVAQ 240

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             +R R+TP+HY K+ +EM  +F+DLPEA +NT+ +A+RC+F++    PILP F       
Sbjct: 241  DERRRLTPEHYFKSPAEMRELFADLPEACDNTLVVAQRCAFMVAKRKPILPPFRMD---- 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARMKFSG 355
                E   LR     GL  RL +     G   ++       YR+R+++E+ VI +M F G
Sbjct: 297  -GLTEAEVLRKMCWDGLAQRLEKHVFQPGMTEEEREHVARPYRERIEYEIGVIEQMGFPG 355

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV+DFIQW+K ++IPVGPGRGSGAGS  A+ALTITD+DPLR+ LLFERFLNP+R+SM
Sbjct: 356  YFLIVSDFIQWSKAHDIPVGPGRGSGAGSAVAWALTITDLDPLRWGLLFERFLNPERVSM 415

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQDRR+E IRYVQ+KYG+ +VAQIITFG LQA+A LRDVGR LQMPY QVDR+
Sbjct: 416  PDFDIDFCQDRREETIRYVQDKYGYHQVAQIITFGKLQARAVLRDVGRVLQMPYGQVDRI 475

Query: 476  CKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            CK++PN+PA PV+L QA+  +   +EAR  D +V  LL++  KLEGLYRHASTHAAG+VI
Sbjct: 476  CKMVPNNPASPVTLEQALEIEPLLKEARERDEAVAHLLDMGMKLEGLYRHASTHAAGVVI 535

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
            GDR L +LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT++  ++  + + +G
Sbjct: 536  GDRSLDELVPLYRDPRSDMPVTQFNMKWVEAAGLVKFDFLGLKTLTVMITAIKHIKKTKG 595

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            + VDLS +P DD  TY LLT     G+FQLESSGMR  L  M+P+ +ED+IA+V+LYRPG
Sbjct: 596  LDVDLSALPLDDQATYELLTRGDAAGVFQLESSGMRDVLRKMRPNQLEDLIAVVALYRPG 655

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  Y   K+G E+   +HPL++P+LKET G+++YQEQVMQIAQ+LSGYSL  AD+L
Sbjct: 656  PMDQIPRYIACKHGLEQPDYMHPLLEPILKETFGIMVYQEQVMQIAQVLSGYSLGGADLL 715

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKKIKEEM+ Q++ F+ GA    +    A  IF+ +AKFA+YGFNKSHAAAYA+I+
Sbjct: 716  RRAMGKKIKEEMEAQRKTFVDGAVARAVDGDQASMIFDKVAKFAEYGFNKSHAAAYALIA 775

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--- 830
            YQTAW+K ++P EF+AA+MT EM N +K+  F Q+  +  I+++PP +N     F V   
Sbjct: 776  YQTAWLKANHPAEFMAATMTYEMANTDKLNSFRQELDRLKIKLLPPDINKSQATFSVEKL 835

Query: 831  --GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887
              G + + Y+LAA+K VG    R I E      P+  L DF  R+D+K+LNRR +E++V 
Sbjct: 836  ADGSHAVRYALAALKNVGEGACRSIAEERERSGPYKDLFDFARRLDTKQLNRRQMENMVR 895

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AG  D    +R ++ ++ + + +Y     + R +   ++     G  +    LE  S  +
Sbjct: 896  AGVFDSLEKNRGKVFKNCEGLLRYGAGEAEQRQSSQMSLLG---GNVAPPPKLENASDWS 952

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR---GNNIRLAAMVVSK 1004
               +   E   +GFY S HPLD +   L+++G+    E    ++    + ++LA  ++SK
Sbjct: 953  PHEKLTQEFDAIGFYLSAHPLDAFSKSLKRLGVLKISELPKHLQAGGKSRVKLAGSMLSK 1012

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            Q++ + KGSR  +VT S+ +  YE   F
Sbjct: 1013 QERTSAKGSRYAFVTASDSSGMYEVTCF 1040


>gi|86604788|ref|YP_473551.1| DNA polymerase III subunit alpha [Synechococcus sp. JA-3-3Ab]
 gi|86553330|gb|ABC98288.1| DNA polymerase III, alpha subunit [Synechococcus sp. JA-3-3Ab]
          Length = 1161

 Score = 1085 bits (2806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1045 (36%), Positives = 605/1045 (57%), Gaps = 34/1045 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L +HS YSLL+GA  L  +++++ A   P +A+TD   ++ A+E  +   + GI+P
Sbjct: 2    AFVPLHLHSEYSLLDGASQLPLLIEQVVAMGLPGLALTDHGVMYGAIELVKLCKSKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
            IIG ++ +   D    + +    +P    +VL     +GY+ L++L +  +L   QGK  
Sbjct: 62   IIGNEMYVINGDIRDKSRK----YPKYHQVVL-AKNTQGYKNLVKLTTISHLQGVQGKGI 116

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   +L +   EGLI+ +G  +G + +A      ++A +    +++ FGD  Y+ 
Sbjct: 117  FARPCINKEYLAQY-KEGLIVTSGCLAGEVPQAILQGRPEIARQVAAWYQEQFGDDYYIE 175

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR+   Q+V++A    +P++ TN+S F+S  D EAHD L+ +     +++K+
Sbjct: 176  IQDHGYREDRFVNVQLVRIARELGIPIILTNDSHFISCWDVEAHDALLCIQTGKSLTEKN 235

Query: 245  RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R +   YLK+  EM  +  D      + EA+ NT+++  +           +P +   
Sbjct: 236  RLRYSGTEYLKSPEEMRRLCRDHLEQEVIDEAIANTLKVLEKIEGYDLFGETRMPDYPVP 295

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                     ++ L   A  GL  R   G        ++Y++RL FELN+I +  FS YFL
Sbjct: 296  PG----HSADSYLTELAWQGLAKRC--GVAYPDQIPENYQERLRFELNIIQQKGFSSYFL 349

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D++++A+++ IPVGPGRGS AGS+ AYAL IT+IDP+++ LLFERFLNP+R SMPD 
Sbjct: 350  VVWDYVRYAREHGIPVGPGRGSAAGSLVAYALQITNIDPVKYGLLFERFLNPERQSMPDI 409

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC +RR E+I YV  KYG ERVAQIITF  + +KA L+DVGR L +PY++ D++ KL
Sbjct: 410  DTDFCIERRGELIDYVTRKYGQERVAQIITFNRMTSKAILKDVGRVLDIPYAEADKMAKL 469

Query: 479  IPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L+ +  +      F+E    DP+  R +E+++ LEG  +    HAAG+VI
Sbjct: 470  IPVSRGKPAKLEEMIGENTPAPEFKEKYEKDPTTHRWIELARLLEGTNKTFGVHAAGVVI 529

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRG 593
               PL ++VP+  +      +TQ++M+ IE  GL+K DFLGL+ LT++Q++++ +   RG
Sbjct: 530  SKDPLDEIVPLQYN-NEGQIITQYSMEDIESLGLLKMDFLGLRNLTMIQRAVELIREHRG 588

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            V +DL  +P DD +TY LL      GIFQLESSGM+Q +  ++P  +EDI ++++LYRPG
Sbjct: 589  VTIDLDNLPLDDEKTYQLLEKGELEGIFQLESSGMKQVVRELKPSNLEDISSVLALYRPG 648

Query: 654  PID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + +RK+G++ +   H L+ P+L++T G I+YQEQ+M+IAQ ++GY+L +AD
Sbjct: 649  PLDTGMIPDFIDRKHGRKPVTYAHDLLKPILQDTYGAILYQEQIMRIAQDMAGYTLGQAD 708

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM+K +E+F+ GA + G++K +A  +F+ +  FA+Y FNKSH+ AY +
Sbjct: 709  LLRRAMGKKKVSEMEKHREQFVRGAVERGVAKEVATELFDQMVAFAEYCFNKSHSTAYGL 768

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            I++QTA++K +YP E++AA ++    + +K++++        IQI PP +N   +DF   
Sbjct: 769  ITFQTAYLKANYPTEYMAALLSSVGGDQDKVQRYITYCLSIGIQIEPPDINRSGLDFTPQ 828

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             + I + L A+K VG    ++I+ A  A  PF SL DFC RVD   +NRR +ESL+ AGA
Sbjct: 829  GSSILFGLGAVKNVGEGAIQNILAARQAGGPFTSLADFCQRVDLHVVNRRAIESLICAGA 888

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT--FSDKITLEKFSVENS 948
             D    +R QL+  LD I  +A    K++     ++F        F +            
Sbjct: 889  FDGISGNRKQLMADLDPILNWAAEQAKSKAIGQASLFDLLGNDQGFIEAPRGPATEDFPP 948

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              +   E+ +LGFY S HPL   +   R +      +        ++ + A++ + +   
Sbjct: 949  QEKLRLERELLGFYVSDHPLRRIQEQARLLAPVNLSDLSGYAADTSVGILALLTAIKTVT 1008

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T++G R+  +   +     EA  FP
Sbjct: 1009 TKRGDRMAILQLEDLTGSCEAVIFP 1033


>gi|145630481|ref|ZP_01786261.1| DNA polymerase III subunit alpha [Haemophilus influenzae R3021]
 gi|144983871|gb|EDJ91313.1| DNA polymerase III subunit alpha [Haemophilus influenzae R3021]
          Length = 1159

 Score = 1085 bits (2806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1048 (38%), Positives = 603/1048 (57%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG            +  +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGA----------DVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGY 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   +G+I+L+GG+ G + +     ++   E  +  +++ F D  Y+
Sbjct: 111  N-DLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENAAEIESAVAFYQEFFADHFYL 168

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    +  R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP   T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +   
Sbjct: 229  KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL-- 286

Query: 303  IQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLI
Sbjct: 287  ---STEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFETEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +     Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A +VV+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAMTKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|160878493|ref|YP_001557461.1| DNA polymerase III DnaE [Clostridium phytofermentans ISDg]
 gi|160427159|gb|ABX40722.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans ISDg]
          Length = 1186

 Score = 1085 bits (2806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1077 (34%), Positives = 588/1077 (54%), Gaps = 66/1077 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ +SLL+G+  +  +  +       A+AITD   ++  ++F +   A GI+P
Sbjct: 2    SFTHLHVHTEFSLLDGSGKIKEMAAQAKKLGMDALAITDHGVMYGVIDFYRACLAEGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +          +G         +VLL     GY  LI++VSR +         
Sbjct: 62   IIGCEVYVAPNSRFD--KEGSASEERYHHLVLLAENDIGYHNLIKIVSRGFTEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L+E  +EG+I L+   +G +      N  + A+   L  +++F     ++ LQ 
Sbjct: 119  RVDHELLKEY-SEGIIALSACLAGEVAVMLRRNFFEEAKASALKLQEIFGAGNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++      +++++    +PLVATN+  +  + D  AHD+L+ +     V+ +DR R
Sbjct: 178  HGYPEQKSVNQGLLRISEETNIPLVATNDIHYTYDTDETAHDILLCIQTQKKVTDEDRMR 237

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK- 305
                  Y+K+  EM  +F    +AL+NT EIA+RC+  ++     LP++       +   
Sbjct: 238  YAGGQFYMKSPEEMRELFPYALQALQNTEEIAKRCNVTIEFGHYKLPKYDVPAPYTVSPG 297

Query: 306  ----------------------EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                                       LR     GL  R           + +   RL++
Sbjct: 298  SGSTDDEGDISASQNISTNTDILAREYLRKLCEEGLVRRYKD-------PSTELWDRLNY 350

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL  I  M F  YFLIV DFI++AK N+I VGPGRGS AGSV +Y L IT+IDP+++SLL
Sbjct: 351  ELETIENMGFVDYFLIVWDFIKYAKDNDIIVGPGRGSAAGSVVSYCLEITNIDPIKYSLL 410

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R++MPD DIDFC +RR EVI YV +KYG +RV QI+TFG++ A+A +RDVGR
Sbjct: 411  FERFLNPERLTMPDIDIDFCFERRQEVIDYVVSKYGKDRVVQIVTFGTMAARAVIRDVGR 470

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            AL MPY+ VD + K+IP +    +  +A+  +   ++   +DP V  L+++S++LEGL R
Sbjct: 471  ALDMPYASVDVVAKMIPTELGITIE-KALNINPDLKKLYESDPEVMHLIDMSKRLEGLPR 529

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
            H S HAAG+VI + P  + VP+ R    D   TQF M  +E+ GL+K DFLGL+TLT++Q
Sbjct: 530  HTSMHAAGVVISNAPADEYVPLSR-SSDDSITTQFTMTTLEELGLLKMDFLGLRTLTVIQ 588

Query: 584  KSLDFLAQ--------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
             ++  + Q            +++  I ++D +   L+++  T GIFQLESSGM+  ++ +
Sbjct: 589  NAVLLVNQAKARLGETEENFLNIDEIDYNDSKVLDLISSAKTEGIFQLESSGMKSFMKEL 648

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            +P  +EDIIA +SLYRPGP+D I  Y   KN ++ I      ++P+L  T G I+YQEQV
Sbjct: 649  KPQNLEDIIAGISLYRPGPMDFIPKYIQGKNNQKSIQYECKELEPILSPTYGCIVYQEQV 708

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK--------NGISKTIAV 747
            MQI + L+GYS   +D++RRAM KK    M+K+++ F+ G  +         GI + +A 
Sbjct: 709  MQIVRELAGYSFGRSDLVRRAMSKKKASVMEKERQSFVYGNVEEGVPGCISKGIPEAVAN 768

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
            +I++ +  FA Y FNKSHAAAYAV+SYQTA++K +YPVEF+AA MT  +DN  K+ ++  
Sbjct: 769  HIYDEMTDFAKYAFNKSHAAAYAVVSYQTAYLKCYYPVEFMAALMTSVIDNPSKVAEYIY 828

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLE 866
              RQ  I+++PP +N     F V    I Y L+AIKG+G      ++ E   + P+ +L+
Sbjct: 829  TCRQMGIKLLPPDINDGYATFTVSGENIRYGLSAIKGLGRPVIDALVIEREENGPYLNLK 888

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF SR+  K++N+R +ES + +GA D    +R QL+     +       +K       ++
Sbjct: 889  DFASRLSGKEVNKRTIESFIKSGAFDSMPGTRKQLMHVYVGVLDGVSQEKKRAMTGQMSL 948

Query: 927  FAHEKGT--FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            F  +      +++I   +    +       E+ VLG Y SGHPL+ Y+ +L++       
Sbjct: 949  FDLDGDAKVMNEEIIFPEVGEYSKEELLAFEKEVLGIYVSGHPLEAYELLLKRNATANTA 1008

Query: 985  ESV--------ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +            G+ + +  M+ S+  K TR  + + ++T  +     E   FP
Sbjct: 1009 DFIVEEETNTVKVADGDTVTVGGMITSRTLKTTRTNAVMAFITLEDMFGTMEVIIFP 1065


>gi|318041279|ref|ZP_07973235.1| DNA polymerase III subunit alpha [Synechococcus sp. CB0101]
          Length = 1178

 Score = 1085 bits (2805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1058 (37%), Positives = 588/1058 (55%), Gaps = 45/1058 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +      ++P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPAMVKRAEELGMPALALTDHGVMYGAIELLKLCKGTAVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +       + +           +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGS---IDDPNPPKKERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 118

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L++  +EGLI+ T    G + +A       VA      ++ +FGD  Y+ 
Sbjct: 119  FSRACIDKPTLEQY-SEGLIVATACLGGELSQAILRGRPDVARDVARWYQGVFGDDFYLE 177

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V+++    +PL+ATN++ +L+  D EAHD L+ +    +V+ + 
Sbjct: 178  IQDHGSPEDRIVNVELVRISQELGIPLIATNDAHYLTSNDAEAHDALLCILTGKLVTDEK 237

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   Y+K   EM+++F+D        EA+ NT  +A +      +    +PRF   
Sbjct: 238  RLRYTGTEYIKGEQEMLALFADHLEPEVVAEAVANTARVAEKVEDYDILGRYQMPRFPIP 297

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E         + LR  +  GL  RL            +Y +RL FEL V+ +M F  YFL
Sbjct: 298  EG----HTPVSYLREVSEQGLRARLQ--LPENEVFTPEYGERLTFELQVMEQMGFPTYFL 351

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A++N IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 352  VVWDYIRFARENGIPVGPGRGSAAGSLVAYALGITNIDPVTNGLLFERFLNPERKSMPDI 411

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC +RR EVI YV  +YG E+VAQIITF  + +KA L+DV R L +PY   DRL KL
Sbjct: 412  DTDFCIERRGEVIDYVTRRYGEEKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKL 471

Query: 479  IPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L+ +  D      FRE    DP V R ++++ ++EG  +    HAAG+VI
Sbjct: 472  IPVVRGKPAKLKEMIGDESPAPEFREKYQNDPQVKRWVDMAMRIEGTNKTFGVHAAGVVI 531

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
               PL ++VP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K++D + Q  G
Sbjct: 532  AADPLDEVVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTIDLVEQSTG 590

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             KVD   +P DD  TY LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRPG
Sbjct: 591  QKVDPDALPLDDPGTYGLLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPG 650

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRK+G+E I   H  ++P+L+ET G+++YQEQ+M+IAQ L+GYSL EAD
Sbjct: 651  PLDAGLIPKFINRKHGREAIDFAHAKLEPILQETYGIMVYQEQIMRIAQDLAGYSLGEAD 710

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK K EM+K +  F+ GA++ G+   IA  +FE +  FA+Y FNKSH+ AY  
Sbjct: 711  LLRRAMGKKKKSEMEKHQSIFVKGATERGVDSKIAEALFEQMVLFAEYCFNKSHSTAYGA 770

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K HYPV ++AA +T+     +K++++  +     I++MPP VN   +DF   
Sbjct: 771  VTYQTAYLKAHYPVAYMAALLTVNAGTTDKVQRYISNCNAMGIEVMPPDVNASGIDFTPV 830

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             +RI + L+A++ +G    R ++EA  AD PF SL D C R+    LNRR LESL+  GA
Sbjct: 831  GDRILFGLSAVRNLGDGAIRALLEARSADGPFRSLADLCDRIPGTTLNRRSLESLIHCGA 890

Query: 891  LDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT--------- 939
            LD      +R QL+  LD I  +A    ++R +   N+F    G  +D +          
Sbjct: 891  LDALEPQANRAQLMADLDLIVDWASSRARDRASGQGNLFDLMGGGSADAVADAAGSGDLS 950

Query: 940  ----LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
                         + +   E+ ++GFY S HPL      ++ +   G            +
Sbjct: 951  TAPKAAPVPDYPPTEKLRLEKDLVGFYLSDHPLKQLTRPVQLLSPVGLGSLEEQADKTRV 1010

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +  MV   +   TRKG R+  +   + +   EA  FP
Sbjct: 1011 SVVGMVAGLRPVTTRKGDRMAVLQLEDLSGSCEAVVFP 1048


>gi|217974045|ref|YP_002358796.1| DNA polymerase III subunit alpha [Shewanella baltica OS223]
 gi|217499180|gb|ACK47373.1| DNA polymerase III, alpha subunit [Shewanella baltica OS223]
          Length = 1157

 Score = 1085 bits (2805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1045 (40%), Positives = 606/1045 (57%), Gaps = 36/1045 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      AG
Sbjct: 2    SDPRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG    +          Q       + ++ ++     GYQ L +++S+ YL  Q  
Sbjct: 62   IKPIIGADFWM----------QVPGFEGELCALTIIAMNNIGYQNLTQIISQAYLRGQVA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V I   WL     EG+++L+G   G + +A    +S   E     ++  F DR ++ L
Sbjct: 112  GRVVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFLEL 170

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R     V LA    +P+VATN  +FL  ED++AH++ +A+     ++   R
Sbjct: 171  IRTGRPDEERYLHMAVILAQDKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   YL++  EM  +F+D+P AL N+VEIA+RC+  ++++   LP F   +     
Sbjct: 231  PKKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYFLPNFPTGDM---- 286

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L + +  GLE RL         +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 287  -SIEDFLVDCSRKGLEERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  EPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +  V+      
Sbjct: 525  FAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVRNGRKPI 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  I   D   + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  RIEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   +  RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     F 
Sbjct: 765  ALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFT 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+ A
Sbjct: 825  VDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICA 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            GALD  G  R  ++ +L    + A    K       ++F        D K    + +   
Sbjct: 885  GALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTPWP 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +  E E+  LG Y +GHP++ Y   L+       ++   T RG   + A +VV+ +  
Sbjct: 945  DKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKIAKAAGLVVATRVM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GS++G +T  + +   E   F
Sbjct: 1005 LTKRGSKMGLLTLDDKSARLEIMLF 1029


>gi|295110725|emb|CBL24678.1| DNA polymerase III catalytic subunit, DnaE type [Ruminococcus obeum
            A2-162]
          Length = 1155

 Score = 1085 bits (2805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1047 (36%), Positives = 586/1047 (55%), Gaps = 41/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +   +D++      + AITD   ++  ++F + A AAGI P
Sbjct: 2    NFTHLHVHTEYSLLDGSNKIKEYVDRVRELGMDSAAITDHGVMYGVIDFYRAARAAGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +          +  +       +VLL    +GY  L+++VS+ ++        
Sbjct: 62   ILGCEVYVAPGSRFDR--EAGSGDDRYYHLVLLAENNQGYSNLMKIVSKGFVEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+ LS L++   EG+I L+   +G + R       + A+K  L ++ +F     ++ LQ 
Sbjct: 119  RVDLSLLEKYH-EGIIALSACLAGEVARFLTRGMYEDAKKAALRYQDIFGKGNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     Q++++     + LVATN+  +   ED + HDVL+ +     ++ +DR R
Sbjct: 178  HGIPEQQNVNQQLLKMHRETGIELVATNDVHYTLAEDAQPHDVLLCLQTGKKLADEDRMR 237

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM  +F   PEALENT +IA+RC   ++     LP+F   E       
Sbjct: 238  YEGGQYYVKSPEEMERLFPYAPEALENTHKIAQRCHVEIEFGVTKLPKFGVPEG----YT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GLE R            ++ ++RL++EL+ I  M +  YFLIV DFI++
Sbjct: 294  SWEYLNELCFKGLEERYQP-------VTEELKERLNYELSTIRNMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ ++I VGPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  ARDHDIMVGPGRGSAAGSLVAYTLGITQLDPIRYDLLFERFLNPERVSMPDIDVDFCFER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV+ KYG + V QI+TFG+L A+  +RDVGR + +PY+QVD + K+IP +    
Sbjct: 407  RQEVIDYVRRKYGDDCVVQIVTFGTLAARGVIRDVGRVMDLPYAQVDTIAKMIPQELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +  F++A      +  L++ +++LEGL RH S HAAG+VI  + +S+ VP+ 
Sbjct: 467  ID-KALQMNPEFKKAYEEQKEIHDLIDTAKRLEGLPRHTSMHAAGVVISQKDVSEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            R       VTQF M  +E+ GL+K DFLGL+TLT++Q ++  + Q  GVK+D+  I ++D
Sbjct: 526  RAS-DGSIVTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVHLIEQDAGVKLDMQHIDYND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +    L T  + G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   K
Sbjct: 585  KKVLDSLGTGRSDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPQYIRGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  + I    P ++ +LK T G I+YQEQVMQI + L+GY+L  +D++RRAM KK    M
Sbjct: 645  NRPDTIKYDCPQLESILKPTYGCIVYQEQVMQIVRNLAGYTLGRSDLVRRAMSKKKAAVM 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K+++ F+         G   NGIS+  A  I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 705  EKERQNFVYGNEEEGVPGCIANGISEQTANKIYDDMIDFAKYAFNKSHAAAYAVVSYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YPVEF+AA MT  ++   K+ ++ Q  RQ NI+I+PP VN     F V +  I Y
Sbjct: 765  FLKYYYPVEFMAALMTSVIEMPTKVAEYIQVCRQMNIKILPPDVNRGAYGFSVDNGAIRY 824

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+AIK VG      ++E   A+  + SL+DF  R+     N+R +E+ + AGALDC   
Sbjct: 825  GLSAIKSVGRPVINALVEEREANGEYRSLKDFIERLTGTV-NKRAIENFIKAGALDCLEG 883

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I       +KN      ++F    ++     +I +      +  +    
Sbjct: 884  NRRQKMLVYGQIVDSIAQEKKNSFAGQMSLFDLVSDEEKKEYEIRMPDVEEYDKEMILAF 943

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--------RGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+ Y+ I+ KM      +              G  + +  M+  K  
Sbjct: 944  EKDVLGIYLSGHPLERYRNIMEKMISAKTTDFQPDEESGIPKVYDGQKVIIGGMITEKTI 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K TR    + ++T  +     E   FP
Sbjct: 1004 KYTRNNKVMAFLTVEDLLGTVEIVVFP 1030


>gi|310823737|ref|YP_003956095.1| DNA polymerase III subunit alpha [Stigmatella aurantiaca DW4/3-1]
 gi|309396809|gb|ADO74268.1| DNA polymerase III, alpha subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 1185

 Score = 1084 bits (2804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1048 (39%), Positives = 604/1048 (57%), Gaps = 37/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL +H+ YSLL+GA+ + +++  +      ++A+TD  N+F+ ++F +KA  AGI+P
Sbjct: 2    SFTHLHLHTLYSLLDGAIRMKDLIKTVKDKGMSSVAVTDHGNMFATIDFYKKAKDAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +          +          ++L+   AEGY  L  L S  Y+ D      
Sbjct: 62   IIGMEAYVA-----GTKGREDRSEKVAHHLILVAQNAEGYANLRYLSSTAYM-DGFYYHP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI    L +  ++GL  LT    G +  A F      A +    +K +F     ++ +Q 
Sbjct: 116  RIDKKVLAQ-HSKGLFALTACLGGEVTSACFRGDMDHARRAATEYKDIFEPGHFFLEVQS 174

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++ +    + QL+   ++PL AT ++ ++  ED  AH++LM +A    +S   R R
Sbjct: 175  NGIPEQDKANENLKQLSRDLDIPLCATADAHYIKREDARAHELLMCIASGKTLSDGKRLR 234

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + D  Y+ +  EM+  F D PEA+ NT  IA +C+  L++  P+LP F   +       
Sbjct: 235  HSTDKLYVTSPQEMLEFFRDTPEAVHNTQVIADQCNLELKLGKPMLPTFKVPD----SHT 290

Query: 307  EENELRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             ++ +   A  GL  R  +       +  + YR RL+ ELNVI +M FSGYFLIV DFI 
Sbjct: 291  PDSFMAELAFEGLHERFKELHHAGAKFDPEMYRARLNLELNVIQKMGFSGYFLIVQDFIN 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAKK NIPVGPGRGSGAGS+ AYAL ITD+DPL ++LLFERFLNP+R+SMPDFDIDFCQD
Sbjct: 351  WAKKANIPVGPGRGSGAGSLVAYALRITDLDPLPYNLLFERFLNPERVSMPDFDIDFCQD 410

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI+YV  KYG   V QIITFGSL+AK+ LRDV R   +P+S+ DR+ KL+P     
Sbjct: 411  RRDEVIKYVSQKYGEMNVGQIITFGSLKAKSVLRDVCRVFGLPFSEGDRIAKLVPEVLGI 470

Query: 486  PVSLQAIADDSRFREARLADPSVDRL----------LEISQKLEGLYRHASTHAAGIVIG 535
             +  +AI  ++R +E      +V  +          LEI+  LEGL+R    HAAG+VI 
Sbjct: 471  TLK-EAIEQEARLKEMMEKPSNVGEVEGKPVTTKDVLEIALALEGLHRQPGMHAAGVVIA 529

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            D+PL + VP+Y+       +TQF    +E AGL+KFDFLGLKTLT++Q +LD + +    
Sbjct: 530  DKPLWEFVPVYQPPGEKTLITQFAKDEVEAAGLVKFDFLGLKTLTVIQNALDLINRNPPN 589

Query: 596  V---DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                +   IP  D   + L+    T G+FQ+ESSG  + +  ++P C ED+IA  +LYRP
Sbjct: 590  GKKLERQDIPLHDELMWKLMADGDTAGVFQMESSGFTEMVMKLKPSCFEDVIAAGALYRP 649

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+D+ +V  + NRK+G+E +   HP ++P+LK+T GVI+YQEQVMQI+Q+L GY+L  A
Sbjct: 650  GPLDSGMVDVFINRKHGREPVTYPHPALEPVLKDTYGVIVYQEQVMQISQVLGGYTLGRA 709

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  E M  ++  F+ G  KN +   +A  IF+L+ KFA+YGFNKSH+AAY 
Sbjct: 710  DLLRRAMGKKKAEVMQAERAGFLEGCKKNNVDLKVAGEIFDLMEKFAEYGFNKSHSAAYG 769

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +I+  TAW+K H+PVEF+AA +T E DN +K+ +   +AR+   Q++PP VN   + F  
Sbjct: 770  LITIHTAWLKAHFPVEFMAALLTSEKDNTDKVVRHIGEAREAGHQVLPPDVNQSDMAFGA 829

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             D +I + L AI GVG      I+EA  D  F  L DFC RVDS+++N++VLE+LV AGA
Sbjct: 830  VDGKIRFGLGAINGVGEGAIESIVEARKDGFFKGLFDFCERVDSRRVNKKVLEALVKAGA 889

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----KITLEKFSV 945
             D     R QL ++++         +K++     ++F    G  +      K    +   
Sbjct: 890  FDFEKRPRRQLFETIERAMNRGSASQKDKAAGQSSLFGMLAGPAAGGGGGMKDDYAQVEE 949

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                 R   E+  +GFY SGHPL  Y   L++   +         R   I +  +V + +
Sbjct: 950  WPEKERLAFEKDAIGFYVSGHPLHQYDKELKRYA-RPVTSVQRARRDEKITVGGIVAALR 1008

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++ T+ G R+ WVT  + +   E   FP
Sbjct: 1009 ERPTKTGKRMAWVTLEDLSGSIELVCFP 1036


>gi|329893785|ref|ZP_08269873.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC3088]
 gi|328923508|gb|EGG30822.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC3088]
          Length = 1160

 Score = 1084 bits (2804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1047 (39%), Positives = 596/1047 (56%), Gaps = 41/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL++H+ YSL++G + +  ++ K+A    PA+A+TD  N F  ++  + A  AG++P
Sbjct: 3    DFVHLRLHTEYSLIDGIVRIKPLMSKVAELGMPAVAVTDFCNFFGLVKAYKAALGAGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G    I           G         + LLV++ EGY  L  L+S+ Y   Q     
Sbjct: 63   IFGADFLIS----------GLAETDRALPLTLLVTSLEGYANLTRLISKAYQEGQRLGVP 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL E    GLI L+GG  G + +    N   +A +    +  LF  R Y+ +QR 
Sbjct: 113  YIEYEWLTEF-QGGLIALSGGREGQLGQLLLANKQDLALEHASQWMALFPGRFYIEIQRT 171

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
             R  +     + V+LA   + P+VATN+  FL  +++EAH+  + +     +    RP  
Sbjct: 172  GRDNEEPYIHEAVKLASALQCPIVATNDVRFLQADEFEAHEARVCIGEGRTLDDPRRPRN 231

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   YL++  EM  +F DLPEAL NTVEIA+RC+ IL +  P LP +   E   +    
Sbjct: 232  YTDQQYLRSPQEMAELFQDLPEALANTVEIAKRCNLILNLGTPYLPEYPVPEGMTM---- 287

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +   R  +  GL  R+    +      +  QDY  RL+ EL++I +M F GYFLIV DFI
Sbjct: 288  DQYFRQLSHEGLAQRIGGQGERIPDPRFSHQDYIDRLNIELDIIIQMGFPGYFLIVMDFI 347

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK+++IPVGPGRGSGAGS+ AY L ITD+DPL++ LLFERFLNP+R+SMPDFD+DFC 
Sbjct: 348  RWAKEHDIPVGPGRGSGAGSLVAYVLLITDLDPLQYDLLFERFLNPERVSMPDFDVDFCM 407

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRRDEVI YV   YG + V+QIITFG++ AKA +RDV R     Y   D+L KLIP +  
Sbjct: 408  DRRDEVIDYVATHYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKLIPFEVG 467

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  +   R+    D     + +++ +LEG+ R+   HA G+VI    L    P
Sbjct: 468  MTL-AKAVEQEEALRDFLRDDSQAQEIWDMACQLEGITRNVGKHAGGVVIAPSKLVDFSP 526

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLS 599
            +Y D      VTQ++   +E AGL+KFDFLGL+TLT++  ++  +  R V       D++
Sbjct: 527  LYCDETGGGLVTQYDKNDVEDAGLVKFDFLGLRTLTIIAWAIKMINPRRVAHGEQALDIN 586

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD+  + LL    T  +FQLES GM+  ++ ++PD  EDIIALV+L+RPGP+ + +
Sbjct: 587  QIPLDDNAVFQLLQQADTTAVFQLESRGMKDLIKRLRPDNFEDIIALVALFRPGPLQSGM 646

Query: 660  --VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
               + NRK+G+E I        H  + P+L  T G+I+YQEQVMQIAQ+L+GY+L  AD+
Sbjct: 647  VDNFINRKHGREAIAYPDAHYQHESLKPILDPTYGIILYQEQVMQIAQVLAGYTLGGADM 706

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  EEM KQ+E F SGA++ GI   +A+ IF+L+ KFA YGFNKSH+AAYA++
Sbjct: 707  LRRAMGKKKPEEMAKQREVFQSGAAERGIDPELAIRIFDLVEKFAGYGFNKSHSAAYALV 766

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQTAW+K HYP EF+AA M+ E+ N +KI  F ++ R   + +  P VN     F V D
Sbjct: 767  SYQTAWLKVHYPAEFMAAVMSSELQNTDKIVIFIEECRAMGLPLKLPDVNEGRYAFTVND 826

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I Y L AIKG+G      I+    A+ PF  L DFC+R D + LN+R +E+LV AGA
Sbjct: 827  LGEIVYGLGAIKGLGEGPVEAILRERDANGPFRDLFDFCARTDRRLLNKRAIEALVRAGA 886

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-----ITLEKFSV 945
             D     R  L+ ++D+  K A+    N  +  +++F     +                 
Sbjct: 887  FDSLSEPRWVLMAAVDDAVKAAEQKASNTASGIDDLFGEVMPSAPSADGNVYAAFRSARP 946

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +   R   E+  LG Y +GHP+D Y+  +R+       +  A  + +  R+  ++V+ +
Sbjct: 947  WSGRERLSGEKDTLGLYVTGHPIDDYEREIRQFVPTKIADLRADGKSSQ-RIVGLIVAVR 1005

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              KT++G  +  VT  + +   EA  +
Sbjct: 1006 TMKTKRGDTMAIVTLDDRSARIEATVY 1032


>gi|170744048|ref|YP_001772703.1| DNA polymerase III subunit alpha [Methylobacterium sp. 4-46]
 gi|168198322|gb|ACA20269.1| DNA polymerase III, alpha subunit [Methylobacterium sp. 4-46]
          Length = 1168

 Score = 1084 bits (2804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 518/1050 (49%), Positives = 704/1050 (67%), Gaps = 29/1050 (2%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL  HSSYSLLEGAL L +++   A D+QPA+A+TDTNNLF ALEFS+KA   G
Sbjct: 5    KDVGFVHLHTHSSYSLLEGALKLGDLVKAAAGDRQPALALTDTNNLFGALEFSEKAAGLG 64

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPI G QL +  +        G  P   +P +VLL     GY  L++L S  Y      
Sbjct: 65   IQPIAGIQLSVLFEAPEPGQRGGPAP---LPHLVLLAKDETGYGHLLKLASLAYFDGPLG 121

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
            ++ R+ +  L++    GLI LTGG  GP+D        + A  RL    + F  D LYV 
Sbjct: 122  EAPRVPVEALRDCA-PGLIALTGGPGGPLDSCLRAARPEHAAGRLARLVEAFGEDHLYVE 180

Query: 186  LQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +QRH   D R  E++++ LA  H LPLVATN   F   EDYEAHD L+A+A   +VS + 
Sbjct: 181  IQRHGLPDERAVEAELIGLADRHGLPLVATNEPFFARPEDYEAHDALLAIAEGRLVSDEK 240

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--------- 295
            R R+TP H  K R+ M  +F DLP+AL  +VEIA RC++ ++   PILP F         
Sbjct: 241  RRRLTPRHDFKTRAAMAELFRDLPDALAASVEIAMRCAYRVRTRKPILPSFGVSGGPAAR 300

Query: 296  ------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                        D   +E  EL+ +A AGL  RLA+   A+G   QDYR RL +E+ +I 
Sbjct: 301  DAAQAGSPAPAGDPALDEAGELKRQAEAGLARRLAEAGPAEGLSEQDYRDRLAYEIGIIT 360

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +MKF GYFLIV+DFI+WAK N+IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLN
Sbjct: 361  KMKFPGYFLIVSDFIKWAKANDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLN 420

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC   R+ VI YVQ++YG  +VAQIITFG+L A+  LRDVGR L+MPY
Sbjct: 421  PERVSMPDFDIDFCVVGRERVIEYVQSRYGEAQVAQIITFGTLLARGVLRDVGRVLEMPY 480

Query: 470  SQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
             QVD+L KL+P +PA+PV+L QAI  + R + A   +P V RL+EI++KLEGL+RHASTH
Sbjct: 481  GQVDKLTKLVPQNPANPVTLVQAIEGEPRLQSAMEEEPVVARLMEIAKKLEGLHRHASTH 540

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+VIGDRPL  LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ + D 
Sbjct: 541  AAGVVIGDRPLEALVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTVLRGATDL 600

Query: 589  LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            L QRG+ +DL+ +P DD  TY  L     +G+FQ+ES+GMR+AL  M  D  ED+IALV+
Sbjct: 601  LEQRGITLDLAALPLDDERTYERLRKGEVVGVFQVESAGMRKALVEMCADRFEDLIALVA 660

Query: 649  LYRPGPIDNIVVYNNRKNGK----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            LYRPGP+ NI VY  RK G+    E +   HP ++P+L ET G+I+YQEQVM++A++L+G
Sbjct: 661  LYRPGPMANIPVYCERKLGRDAGNEAVWYPHPKLEPILAETFGIIVYQEQVMEVAKVLAG 720

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YSL +AD+LRRAMGKKIK EMD Q++RF+ GA + G+ K  A  IF+LLAKFADYGFNKS
Sbjct: 721  YSLGDADLLRRAMGKKIKAEMDAQRDRFLKGAMERGLDKAKANEIFDLLAKFADYGFNKS 780

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAAAYA+I+YQTA++K +YPVEFLAASM+ ++D+ +K+ +  QDA++  I++ PPSVN  
Sbjct: 781  HAAAYALITYQTAYLKANYPVEFLAASMSQDLDDTDKLAELRQDAQRLAIKVEPPSVNRS 840

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
             V F+V D  I Y+LAAIKGVG      I++A  D+PF  L DF  R++ + +N+R LES
Sbjct: 841  GVTFEVHDGTIRYALAAIKGVGRAAVEAIVQARGDRPFRDLGDFARRLNPRLVNKRTLES 900

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            LV AGALD     R +   +++ + + AQ   +  T    ++F       +  + +  + 
Sbjct: 901  LVGAGALDEIEPDRARAFAAIEPMLRLAQGALEAETVGMTDMFGGVAAA-TVALRIPPYD 959

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAMVV 1002
               ++ R + E   +GF+ SGHPLD Y  +L+K+ ++ + E   ++R GN++ R+AA V+
Sbjct: 960  PWPAADRLKKEYEAVGFFLSGHPLDEYGELLKKLRVQTWVEFCRSVRAGNSVGRVAATVL 1019

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +++T+ G+++G V  S+    +EA  F
Sbjct: 1020 DRSERRTKTGNKLGIVNLSDQTGHFEAIVF 1049


>gi|148827930|ref|YP_001292683.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittGG]
 gi|148719172|gb|ABR00300.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittGG]
          Length = 1159

 Score = 1084 bits (2804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1048 (38%), Positives = 603/1048 (57%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG            +  +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGA----------DVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGY 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 111  N-DLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    +  R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP   T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +   
Sbjct: 229  KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL-- 286

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +      Y +RL  EL+VI +M F GYFLI
Sbjct: 287  ---STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFETEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +     Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A +VV+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAMTKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|260425354|ref|ZP_05779334.1| DNA polymerase III subunit alpha [Citreicella sp. SE45]
 gi|260423294|gb|EEX16544.1| DNA polymerase III subunit alpha [Citreicella sp. SE45]
          Length = 1177

 Score = 1084 bits (2803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 516/1062 (48%), Positives = 692/1062 (65%), Gaps = 56/1062 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VH+ YSLLEGA+ L  +     A + PA+A+TDTNNLFSALEFS  A  AG+Q
Sbjct: 7    PRFIHLRVHTEYSLLEGAVRLKKLPGLCEAMEMPAVAVTDTNNLFSALEFSVTASGAGVQ 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGCQ+D+           G+ P P  P +VLL     GY+ L++L SR+Y+   G+  
Sbjct: 67   PIIGCQVDL----RYLNPAPGERPKPPAP-VVLLAQNERGYENLMKLNSRLYMRHDGEF- 120

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              + L  L E  ++GLI L+GG  GP+ R    N    A+  L    ++FGDRLYV LQR
Sbjct: 121  PHVLLDEL-ETLSDGLICLSGGPDGPVGRLLRENHRAAAQVLLTRLHQIFGDRLYVELQR 179

Query: 189  HRGYDRYRESQV------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            H G D   E++       V++AY   LPLVATN+  F     YEAHD ++ +A    V Q
Sbjct: 180  HPGEDGLPEAERLSERGHVEMAYEMGLPLVATNDVYFPKPAMYEAHDAMICIAEGAYVDQ 239

Query: 243  KD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            +  R R+TP HYLK   EMV++F+DLPEA+ENTVEIARRC+F+     PILP+F + E  
Sbjct: 240  QQPRRRLTPQHYLKTPQEMVTLFADLPEAIENTVEIARRCAFMAYRRDPILPKFADDEV- 298

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                    ELR  A  GL+ RLA   I      + Y++RLDFEL +I  M F GYFLIVA
Sbjct: 299  -------AELRRMANEGLQRRLA--VIPHAVTVEQYQERLDFELGIIEGMGFPGYFLIVA 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDID
Sbjct: 350  DFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDID 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRR+EVIRYVQ KYGH++VAQIITFG+L +K A+RDVGR LQMPY QVDRL K+IP 
Sbjct: 410  FCMDRREEVIRYVQEKYGHDKVAQIITFGALLSKMAVRDVGRVLQMPYGQVDRLSKMIPV 469

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   PVS+ +A+ D+ R RE    +  VDRLL   Q++EGL R A THAAG+VI DRP  
Sbjct: 470  EGVKPVSIEKALQDEPRLREEARNEEVVDRLLTYGQQIEGLLRSAGTHAAGVVIADRPTD 529

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD--- 597
            +LVP+Y+D RS++P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + + G  +    
Sbjct: 530  ELVPLYQDPRSEMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKGGRPIHVAA 589

Query: 598  ---------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
                           ++LIP DD  TY L     T+ +FQ+ESSGM  AL+ M+P CIED
Sbjct: 590  DGTQLYEPAEGGENQMNLIPLDDERTYRLYADAKTVAVFQVESSGMMDALKRMKPTCIED 649

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            I+ALV+LYRPGP++NI VY   KNG  +I S+HP ID +L ETQG+I+YQEQVMQIAQ++
Sbjct: 650  IVALVALYRPGPMENIPVYCEVKNGLREITSVHPSIDHILAETQGIIVYQEQVMQIAQVM 709

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +GYSL  AD+LRRAMGKKIKE MD ++ +F  GA++NG+ K  A  +F+LL KFA+YGFN
Sbjct: 710  AGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKATEVFDLLEKFANYGFN 769

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821
            KSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  +  +A++   +  +PP V
Sbjct: 770  KSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLATYFYEAKKGLKLDYVPPCV 829

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA---------DKPFDSLEDFCSRV 872
            N     F V   ++ Y+L A+K VG    R ++E            DKPF ++ DF  RV
Sbjct: 830  NRSQATFDVDKGKLVYALGALKNVGLEAMRLVVEGRRSVPEDPKSPDKPFVNVFDFARRV 889

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D K++ +R LE L  AG  D    +R ++ +SLD +  Y+  V + + +   ++F  E G
Sbjct: 890  DLKRVGKRPLEMLARAGCFDQLDRNRRRIFESLDALVAYSAAVHEQKHSAQVSLFG-EAG 948

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                +  L        + R   E + +GFY SGHPLD Y P L++  +   +++    RG
Sbjct: 949  DDLPEPRLSPVPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRRDVMLLDDAENKARG 1008

Query: 993  NN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++LA +V  +Q++K+ KG+R  +   S+P+  YE   F
Sbjct: 1009 GTCLVKLAGVVAGRQERKSAKGNRFAFAQLSDPSGAYEVTIF 1050


>gi|145634848|ref|ZP_01790556.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittAA]
 gi|229844610|ref|ZP_04464749.1| DNA polymerase III subunit alpha [Haemophilus influenzae 6P18H1]
 gi|145268014|gb|EDK08010.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittAA]
 gi|229812324|gb|EEP48014.1| DNA polymerase III subunit alpha [Haemophilus influenzae 6P18H1]
          Length = 1159

 Score = 1084 bits (2803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1048 (38%), Positives = 604/1048 (57%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG            +  +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGA----------DVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGY 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 111  N-DLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFYL 168

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    +  R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP   T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +   
Sbjct: 229  KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL-- 286

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +      Y +RL  EL+VI +M F GYFLI
Sbjct: 287  ---STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD +++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPKSFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT E+DN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +     Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A ++V+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAITKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|291086159|ref|ZP_06354987.2| DNA polymerase III, alpha subunit [Citrobacter youngae ATCC 29220]
 gi|291068957|gb|EFE07066.1| DNA polymerase III, alpha subunit [Citrobacter youngae ATCC 29220]
          Length = 1144

 Score = 1084 bits (2803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1032 (39%), Positives = 605/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G    +    
Sbjct: 1    MIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFHV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  + +     +  + +L +   GYQ L  L+S+ Y    G +   I   WL E+  
Sbjct: 57   ------RSELLGDELTQLTVLAANNTGYQNLTLLISKAYQRGYGAEGPVIDRDWLVEL-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F +  ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPNSYFLELIRTGRQDEENYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V+LA T  LP+VATN+  FL   D++AH++ +A+     +    RP   +   Y+++  E
Sbjct: 170  VELAETRGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRNYSAQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEAL+NTVEIA+RC+  +++    LP+F   +        E+ L  K+  GL
Sbjct: 230  MCELFSDIPEALQNTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDFLVAKSKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EQRLEFLFPDPEERAKRRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D +   PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D++ IP DD +++ +
Sbjct: 524  QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA K G+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRGTFEEGAKKRGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA  +   F  L D C+R D KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNEGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLSDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG     A +V++ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|260588911|ref|ZP_05854824.1| DNA polymerase III alpha subunit [Blautia hansenii DSM 20583]
 gi|331083399|ref|ZP_08332511.1| hypothetical protein HMPREF0992_01435 [Lachnospiraceae bacterium
            6_1_63FAA]
 gi|260540690|gb|EEX21259.1| DNA polymerase III alpha subunit [Blautia hansenii DSM 20583]
 gi|330404092|gb|EGG83640.1| hypothetical protein HMPREF0992_01435 [Lachnospiraceae bacterium
            6_1_63FAA]
          Length = 1156

 Score = 1084 bits (2803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1047 (35%), Positives = 578/1047 (55%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +N  + ++      + AITD   +F  ++F + A AAGI+P
Sbjct: 2    NFAHLHVHTEYSLLDGSNKINEYVARVKELGMNSAAITDHGVMFGCIDFYRAAKAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +          +          +VLL     GY+ L+++VS+ ++ D      
Sbjct: 62   ILGCEVYVAPGSRFDR--EIGQAEDRYYHLVLLAENNHGYENLMKIVSKAFV-DGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+ +  LQE   EG+I L+   +G + +       + A+   L ++K+F     ++ LQ 
Sbjct: 119  RVDMDLLQEYH-EGIIALSACLAGEVAKNITRGMYEEAKSAALRYEKIFGKGNFFLELQD 177

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    + R   Q+++++    + LVATN+  +  + D EAHD+L+ V    ++S ++R R
Sbjct: 178  HGIPQQQRVNQQLLRMSQETGIALVATNDVHYTYDTDAEAHDILLCVQTRKLLSDENRMR 237

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM  +F  +PEALENT +IA RC   ++     LP+F           
Sbjct: 238  YEGGQYYVKSPEEMAELFPYIPEALENTQKIADRCEVEIEFGVTKLPKFDVP----APYT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GL+ R +           +  +RL++EL VI  M +  YFLIV DFI++
Sbjct: 294  SWEYLNKLCYDGLKERYSGDLT-------ELEKRLEYELGVIKTMGYVDYFLIVWDFIRF 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ ++I VGPGRGS AGS+ +Y L IT +DP++++LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  ARDHDIMVGPGRGSAAGSLVSYTLGITKLDPIKYNLLFERFLNPERVSMPDIDVDFCFER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG++ A+  +RDVGR + +PY+Q D + K+IP +    
Sbjct: 407  RQEVIDYVVEKYGKDRVVQIVTFGTMAARGVIRDVGRVMDLPYAQCDAIAKMIPEELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   +     D  V +L+++S++LEGL RH S HAAG+VI  + + + VP+ 
Sbjct: 467  ID-KALKMNPELKNLYTTDEMVKKLIDMSRRLEGLPRHTSMHAAGVVISQKSVDEYVPLA 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
            R       VTQF M  +E+ GL+K DFLGL+TLT++QK++  +   +G+ +D+  + ++D
Sbjct: 526  RAS-DGSIVTQFTMTTLEELGLLKMDFLGLRTLTVIQKAVKLIEKNKGISLDMDHVDYND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
               Y +L    T G+FQLES+GM   ++ ++P+ +ED+IA +SLYRPGP+D I  Y   K
Sbjct: 585  KAVYDMLGAGKTEGVFQLESAGMTSFMKELKPESLEDVIAGISLYRPGPMDFIPQYIEGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  + I  + P ++P+L  T G I+YQEQVMQI + L GY+L  +D++RRAM KK    M
Sbjct: 645  NNPDSIHFLCPQLEPILSATYGCIVYQEQVMQIVRSLGGYTLGRSDLVRRAMSKKKAAVM 704

Query: 726  DKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K+++ F+ G  +         GIS+ IA  I+E +  FA Y FNKSHAAAYAV++YQTA
Sbjct: 705  EKERQNFVYGNEEEGVPGCVNRGISEEIANKIYEQMMDFAKYAFNKSHAAAYAVVAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K H+PVEF+AA MT  +DN  K+  +    R+  I I+PP +N     F V    I Y
Sbjct: 765  YLKCHFPVEFMAALMTSVIDNPPKVADYILSCRRMGIAILPPDINKGDSTFSVDGGGIRY 824

Query: 838  SLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+AIK +G      I+        F SL DF  R+  K +N++ +E+ + AGA D    
Sbjct: 825  GLSAIKSIGKPVIESIVAERNQRGDFTSLRDFIERMTGKDVNKKAIENFIKAGAFDELPG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I       +KN      ++F    E+   + +I +          +   
Sbjct: 885  NRRQKMMVYAQILDAIVQEKKNMMAGQMSLFDFVSEEEKTAYEIHMPDVEEYPKEAKLAF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+ Y+   RK       + +            G  + +  M+  K  
Sbjct: 945  EKEVLGIYISGHPLEEYETCWRKNISAVTTDFMPDEESGQPKVRDGQQVIVGGMITEKTI 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + ++T  +     E   FP
Sbjct: 1005 KYTKTNKVMAFLTLEDLLGTVEIVVFP 1031


>gi|283850843|ref|ZP_06368129.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. FW1012B]
 gi|283573766|gb|EFC21740.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. FW1012B]
          Length = 1153

 Score = 1084 bits (2803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1036 (40%), Positives = 601/1036 (58%), Gaps = 29/1036 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YSLL+GA+ + +++   A+   PA AITD  NL  AL F   A  AGI+P
Sbjct: 3    DFVHLHCHTEYSLLDGAIRIGDLVKTAASFGSPAAAITDHGNLHGALIFYDYAKKAGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +            + P      +VLL     GY+ L++LV+  +         
Sbjct: 63   IIGCEVYVTAASR-----HDRDPRNPRYHLVLLAQNLAGYKNLLKLVTLGHTEGM-YYKP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L + G EGLI L+    G I++         A      +  LF DR Y  +Q +
Sbjct: 117  RVDKELLGKYG-EGLIALSACLKGEINQRLLKEGKDQAVACAREYMALFPDRFYFEIQAN 175

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++      ++ L+   ++PLVATN+  +L  ED EAHDVL+ +  +  V    R R 
Sbjct: 176  GIPEQQTVNDFLIDLSDDLKVPLVATNDCHYLRAEDAEAHDVLLCIQTAACVDDAKRMRF 235

Query: 249  TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            T  D Y ++  EM   F+ +P+AL NT EIA R    L+      P +         K  
Sbjct: 236  TTKDLYYRSPDEMAEAFAHVPQALANTCEIAERVDLSLKFGDYHFPVYKTPPG----KSL 291

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++ + + A  GL  RLA+   A     + Y  RL+ EL+VI +M F GYFLIV DFI WA
Sbjct: 292  DDVMADMARQGLRDRLAKMPDA---EPKKYWDRLELELDVIKQMGFPGYFLIVQDFINWA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K + IPVGPGRGS AGS+ AYAL IT++DPL + LLFERFLN +R+SMPD D+DFC+ RR
Sbjct: 349  KDHGIPVGPGRGSAAGSLVAYALRITNLDPLPYDLLFERFLNIERVSMPDIDVDFCERRR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVIRYV  +YG   VAQI TFG+++AK  +RDVGRAL M + + DR+ KLIP++    +
Sbjct: 409  YEVIRYVTERYGENAVAQITTFGTMKAKGVVRDVGRALGMTFGETDRIAKLIPDELKMTI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   +     DP V  L++IS++LEGL RHASTHAAG+V+ D  +++ VP+Y+
Sbjct: 469  D-KALEREPELKVLMRTDPRVGHLIDISKRLEGLARHASTHAAGVVVSDTAMTEYVPLYK 527

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDH 606
               ++  VTQ++MK +EKAGL+KFDFLGLKT+T++  +L  +        DL  +PF D 
Sbjct: 528  GKNNET-VTQWDMKRVEKAGLVKFDFLGLKTMTVIDDALKIIEGMGVTPPDLDTLPFTDE 586

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
            +TY L     T GIFQ+ES GMR+ L  ++P+C ED+IA+++LYRPGP+ + +V  +  R
Sbjct: 587  KTYELFAKGDTDGIFQVESQGMRKYLRMLRPNCFEDLIAMLALYRPGPLGSGMVEQFIRR 646

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G++ +   HP ++  LK T GVI+YQEQVM+IAQ+L+ +SL   D+LRRAMGKK  EE
Sbjct: 647  KHGEDPVEYPHPRLEETLKPTYGVIVYQEQVMKIAQVLASFSLGAGDLLRRAMGKKNAEE 706

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ++ F+ G + NGI    A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K HYP
Sbjct: 707  MGKQRQFFVDGCAGNGIEAKKANEIFDLMEKFAEYGFNKSHSAAYALISYHTAYLKAHYP 766

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            V F+AA MT +M+N +K+ ++    R  +I++ PP VN     F V DN+I Y LAA+K 
Sbjct: 767  VAFMAALMTSDMENQDKLLQYIAACRDNDIELCPPDVNAGLPHFSVKDNKILYGLAAVKN 826

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +G      I+ E  A+ PF SL DF SRV+ +K+ +RV+E L+  GA D FG SR  L+ 
Sbjct: 827  IGRDAVAEIVAEREANGPFTSLLDFTSRVNMRKVTKRVIEYLIKCGACDGFGCSRAGLVA 886

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL------EKFSVENSSVRFENEQR 957
             LD      Q    ++ +   ++           + L                    E+ 
Sbjct: 887  GLDQAAALGQKRAADKNDGRLSLMTLMPEKPKPTVGLGLSCPEATLPEWLHEEMMAFEKE 946

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             LGFY + HPL  Y+  LR M      +      G  +++A + VS ++  T+KG ++ +
Sbjct: 947  ALGFYLTSHPLLAYERDLRAMRTTTLAQCAGIEPGVEVKVACICVSTKEIITKKGQKMAF 1006

Query: 1018 VTFSE-PAKEYEANFF 1032
                +    E EA  F
Sbjct: 1007 CKLEDHLGGEAEAVVF 1022


>gi|116748665|ref|YP_845352.1| DNA polymerase III subunit alpha [Syntrophobacter fumaroxidans MPOB]
 gi|116697729|gb|ABK16917.1| DNA polymerase III, alpha subunit [Syntrophobacter fumaroxidans MPOB]
          Length = 1164

 Score = 1084 bits (2803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1039 (40%), Positives = 614/1039 (59%), Gaps = 24/1039 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL VH+ YSLL+GA+ L ++++   + + PA+ +TD  N+F ALEF +KA AAGI+P
Sbjct: 3    AFVHLHVHTQYSLLDGAIRLTDLIETARSMEMPAVTMTDHGNMFGALEFYEKAKAAGIRP 62

Query: 70   IIGCQLDIDMQDNLKMTNQ----GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            IIGC++ +  +       +    G         +VLL   A GYQ L++LVS  YL    
Sbjct: 63   IIGCEVYLAPRSRHDRHGRAEGSGTGEEDRNYHLVLLAKDATGYQNLMKLVSAGYLEG-F 121

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYV 184
                RI    L +   EGLI L+    G +      N    A      +  +   D  Y+
Sbjct: 122  YYKPRIDKEILLQ-HHEGLIGLSSCLKGEVATLLSRNQESAARDAAREYAGILGPDHFYL 180

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ +   ++ +   +++ +     LPLVATN+  +L + D  AH++L+ +     V  +
Sbjct: 181  ELQANGMPEQAKVNERLIVMGKELGLPLVATNDCHYLRKSDARAHEILLCIQTGKTVLDE 240

Query: 244  DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R +   D  Y K+  EM   F+ +PEALEN+V IA RC   L++     P F   E + 
Sbjct: 241  KRMKFQTDQLYFKSPEEMAREFAHVPEALENSVAIAERCRLELKLGDYHFPVFPLDEGES 300

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFL 358
            +    E++    A+ G   RL +    +   ++    +Y +RL  EL VI  M F+ YFL
Sbjct: 301  V----EDKFEKTALEGFRRRLRELEKRRSGFSEQDRGEYEERLRSELAVIREMGFAAYFL 356

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI +AK + IPVGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+R+SMPD 
Sbjct: 357  IVGDFINYAKSHGIPVGPGRGSAAGSLVAYAMNITDLDPIEHGLIFERFLNPERISMPDI 416

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC   R+EV  YV  KYG  RVAQI TFG++QA+A +RDVGRAL MPY++VDR+ KL
Sbjct: 417  DVDFCIRGREEVFNYVSEKYGKNRVAQITTFGTMQARAVIRDVGRALAMPYNEVDRIAKL 476

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP+     +  +A   + R  E +  DP +  L EI+  LEGL RHASTHAAG+V+ DRP
Sbjct: 477  IPSSLGMTLE-KAFQAEPRLAEQQREDPQIRELFEIAFALEGLTRHASTHAAGVVMADRP 535

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
            + + +P+Y     ++ VTQ+ MK++E+AGLIKFDFLGL+ LT++  ++  + +   +++D
Sbjct: 536  IVEYMPLYLGQDGEV-VTQYPMKYVERAGLIKFDFLGLRNLTVIDDAVRLIRETHGLELD 594

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  +P DD +TY LL+   T G+FQLESSGMR  L  ++P+   DI+ALV+LYRPGP+++
Sbjct: 595  MLALPLDDRDTYALLSRADTTGVFQLESSGMRNILARLKPENFADIVALVALYRPGPLES 654

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  Y   K+G+ +I     ++ P+L+ T GVI+YQEQVM+IA +++ Y+L EADVLRR
Sbjct: 655  GMVELYIQGKHGQIEITYDPEILRPILEPTYGVILYQEQVMKIASVMASYTLGEADVLRR 714

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  E M  Q+ RF+ G+ KNGI    A +IF+L+ KFA YGFNKSH+AAYA+++YQ
Sbjct: 715  AMGKKNAEAMRDQRARFVEGSRKNGIPLAKANHIFDLMEKFAGYGFNKSHSAAYALVAYQ 774

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++KTHY VEF+AA +   + + +++ +   + R+  I I+PP VN    DF V   +I
Sbjct: 775  TAYLKTHYLVEFMAALLNSFLSSSDQVVRLISECREKGIDILPPDVNASSRDFTVVGGKI 834

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L A+K VG      I+       PF S+ DFC RVD++++NRRVLE LV  GA D  
Sbjct: 835  RFGLGAVKNVGEAAIEVILNTRVERGPFKSIHDFCLRVDTQRVNRRVLEQLVKCGAFDSI 894

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-TFSDKITLEKFSVENSSVRFE 953
               R  ++ +LD+    AQ V+++R +   N+F   K  T +    L +    +     +
Sbjct: 895  HSCRAGVMAALDDALDKAQAVQRDRQSGQINMFDLLKPRTKAGASALPEVPEWDGRQTLQ 954

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  LGFY SGHPLD Y   + ++     +       G  + L  M+   ++  T+KG 
Sbjct: 955  FEKEALGFYISGHPLDSYAAQISQLCTADTQAVKERKEGAEVILCGMISIVKELTTKKGD 1014

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            R+ ++   +     E   F
Sbjct: 1015 RMAFLAIEDKEGVLEVVAF 1033


>gi|145632094|ref|ZP_01787829.1| DNA polymerase III subunit alpha [Haemophilus influenzae 3655]
 gi|144987001|gb|EDJ93531.1| DNA polymerase III subunit alpha [Haemophilus influenzae 3655]
          Length = 1159

 Score = 1084 bits (2803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1048 (38%), Positives = 602/1048 (57%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG            +  +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGA----------DVKVKSTLCGDEYFYLTLLAKNNEGYKNITLLLSKAYQRGY 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   EG+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 111  N-DLPYIDQDWLIE-HREGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    +  R  Q  ++LA    LPLVATN+ +FL  +D+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNEERYIQAALKLAERCNLPLVATNDVMFLKSDDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP   T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +   
Sbjct: 229  KRPKYYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL-- 286

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +      Y +RL  EL+VI +M F GYFLI
Sbjct: 287  ---STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVTETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +S +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLS-KAFEAEPQLQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFSPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRAETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAKYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +     Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A ++V+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+ +G  T  + +   +   F
Sbjct: 1003 RIAITKKGNSLGIATLDDRSGRLDLTLF 1030


>gi|325972730|ref|YP_004248921.1| DNA polymerase III subunit alpha [Spirochaeta sp. Buddy]
 gi|324027968|gb|ADY14727.1| DNA polymerase III, alpha subunit [Spirochaeta sp. Buddy]
          Length = 1155

 Score = 1084 bits (2803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1036 (39%), Positives = 608/1036 (58%), Gaps = 18/1036 (1%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            T+   +   FVHL  H+ +SLL+GA  +   + K  +    ++AITD  N+F AL F   
Sbjct: 6    TEITTQQSRFVHLHNHTDFSLLDGAAPIGRYMAKAKSLGMTSLAITDHGNMFGALRFYNA 65

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A  AGI+PIIGC+   +   + +    G    P    ++LL    +GY  L+EL S  Y 
Sbjct: 66   ARDAGIKPIIGCEFYCNPAGHTERPAPGGR-KPNQYHLILLAINEKGYHNLMELNSLSYT 124

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD- 180
                    RI    L +   EG+I L+    G I +    +  + A++R L F  +F D 
Sbjct: 125  QG-FYFKPRIDDELLVKY-NEGVICLSACLGGEILQHLLNDQYEKAKERALWFSSVFDDG 182

Query: 181  RLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R Y+ +Q H   D+ R    + QL+    +PLV TN+  ++ ++D  A D+L+ V  ++ 
Sbjct: 183  RYYLEMQDHNLPDQKRTNPLLKQLSEETGIPLVCTNDIHYIEKDDANAQDLLLCVGTNSK 242

Query: 240  VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
             +  DR R    + Y+K+  +M SIFS  PEALENT +IA RC+  + +  P+LP F   
Sbjct: 243  KNDPDRMRFPNQEFYMKSEEQMASIFSWCPEALENTGKIADRCNLEIHLPGPLLPDFEVP 302

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +  +      + LR+ +  GL+ R            ++  +RLD+EL+VI +MKF GYFL
Sbjct: 303  QGFEG---PAHYLRHLSHEGLKKRY-------SVVTEELTKRLDYELDVIIKMKFEGYFL 352

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV D+IQWAKK++IPVGPGRGSGAGS+ AY++ ITD+DP++++LLFERFLNP+R+SMPDF
Sbjct: 353  IVMDYIQWAKKHDIPVGPGRGSGAGSLVAYSIDITDVDPIKYNLLFERFLNPERVSMPDF 412

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC +RR EVI YV   YG ERVAQI TFG+L+AKA ++DV R L +P+ + + +CKL
Sbjct: 413  DIDFCFERRQEVINYVTEHYGTERVAQIATFGTLKAKAVVKDVARVLDIPFDESNNICKL 472

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP+DP   +  +A   +    E          L + +++LEGL RH STHAAG+VIG   
Sbjct: 473  IPDDPKMTL-AKAFEQNKELVELEQKGGIYAELFDAARRLEGLNRHTSTHAAGVVIGKEE 531

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            L   VP+YRD ++    TQ+ M  IE+ GL+K DFLGLKTLTL++ + D + ++  K   
Sbjct: 532  LVNYVPLYRDAKTGAISTQYTMDLIEECGLVKMDFLGLKTLTLIKHTEDLIHKKDPKFTS 591

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + I   D +T+ +L    +  +FQ ES GM+  L+  +P  IED++AL +LYRPGP+  I
Sbjct: 592  TAIDEKDPKTFEMLCRGDSTAVFQFESQGMQNILKEAKPSNIEDLVALNALYRPGPMAYI 651

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + N K G++ I   +P ++  LK T GVI+YQEQVM++AQ+++GYSL  AD+LRR MG
Sbjct: 652  PQFVNCKLGRQPITYANPELEEELKTTYGVIVYQEQVMKVAQIIAGYSLGGADILRRIMG 711

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK    ++K+K +FI+GA   G S+  A  IFE+L  FA YGFNKSHA AY+V++YQTA+
Sbjct: 712  KKKVAALEKEKVKFIAGAKALGRSEQHAAEIFEMLEPFAGYGFNKSHAVAYSVVAYQTAF 771

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YP EF AA++T EM + +K  ++ Q A+   ++I+PPSVN     F V + +I Y 
Sbjct: 772  LKANYPAEFWAANLTNEMGSPDKFSEYLQVAKDQGLEILPPSVNYSDKHFSVVNGKIVYG 831

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            LA IK VG      ++ E  A  P+  L DF +R+D+K +N ++LESL+ AGA D  G +
Sbjct: 832  LAGIKNVGEGVVELLVSEREAHGPYKDLLDFLTRLDAKAMNTKLLESLIKAGAFDTLGTN 891

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL++L +   Y Q  ++       ++F  E     +  T++         + E E+ 
Sbjct: 892  RPTLLENLGDAITYVQKRKEATAFGQISLFDDETEASMETFTMKPAEDWKLPEKLEMEKG 951

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            +LGFY SGHPLD +   + +                   + AMV S +   T+KG  + +
Sbjct: 952  LLGFYISGHPLDAFSQAINQRVTANTAHLENVAFNRPTNIIAMVSSIRPFTTQKGGIMAF 1011

Query: 1018 VTFSEPAKEYEANFFP 1033
            +  ++    ++A  FP
Sbjct: 1012 LQLTDRNATFDATLFP 1027


>gi|260583164|ref|ZP_05850944.1| DNA polymerase III subunit alpha [Haemophilus influenzae NT127]
 gi|260093782|gb|EEW77690.1| DNA polymerase III subunit alpha [Haemophilus influenzae NT127]
          Length = 1159

 Score = 1083 bits (2802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1048 (38%), Positives = 602/1048 (57%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG            +  +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGA----------DVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGY 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 111  N-DLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    +  R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP   T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +   
Sbjct: 229  KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL-- 286

Query: 303  IQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLI
Sbjct: 287  ---STEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQMLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +     Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A +VV+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAMTKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|167760733|ref|ZP_02432860.1| hypothetical protein CLOSCI_03118 [Clostridium scindens ATCC 35704]
 gi|167661620|gb|EDS05750.1| hypothetical protein CLOSCI_03118 [Clostridium scindens ATCC 35704]
          Length = 1158

 Score = 1083 bits (2801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1047 (35%), Positives = 571/1047 (54%), Gaps = 39/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      ++AITD   +F  ++F + A A GI+P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKECVSRVKELGMDSVAITDHGVMFGVIDFYRAAKAVGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G +       +VLL  T  GY  L+++VSR +         
Sbjct: 62   ILGCEVYVAPGSRFDKEAVG-SGDNRYYHLVLLAETDLGYHNLMKIVSRGFTEG-YYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+ +  L+E   +G+I L+   +G + +       +  +   L ++++FG+   ++ LQ 
Sbjct: 120  RVDMEILKEFH-QGIIALSACLAGEVQKNIVRGMYEEGKAAALRYQEIFGEGNFFLELQD 178

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++      ++++A   ++ LVATN+  +   ED +AHD+L+ +     V+ +DR R
Sbjct: 179  HGIQEQKLVNQSLLRMAKETQIGLVATNDVHYTYAEDEKAHDILLCIQTGKKVADEDRMR 238

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM ++F    EALENT +IA RC+  ++     LP++   E       
Sbjct: 239  YEGGQYYIKSEEEMKTLFPYALEALENTQKIADRCNVEIEFGVTKLPKYDVPEG----YT 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GL+ R   G  +        ++RL++EL+VI  M +  YFLIV DFI++
Sbjct: 295  SWEYLNKLCYDGLKERYPDGEGS-------LKERLEYELSVIKSMGYVDYFLIVWDFIKY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ ++I VGPGRGS AGS+ +Y L IT IDP+++ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 348  ARDHDIMVGPGRGSAAGSIVSYTLGITSIDPIKYQLLFERFLNPERVSMPDIDVDFCFER 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG++ A+  +RDVGR + +PY+ VD + K++P +    
Sbjct: 408  RQEVIDYVVEKYGSDRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDGIAKMVPTELNIT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +  F+     D  V  L+++S++LEGL RH S HAAG+VI  + + + VP+ 
Sbjct: 468  LE-RALTVNPEFKRMYQEDEQVRELIDMSKRLEGLPRHTSMHAAGVVISQKAIDEYVPLS 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                     TQF M  +E+ GL+K DFLGL+TLT++Q ++       G  +++  I ++D
Sbjct: 527  LGS-DGSVTTQFTMTTLEELGLLKMDFLGLRTLTVIQDAVKLASRSSGKDINMEQIDYND 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                  + T  T GIFQLES GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 586  KAVLDSIGTGRTDGIFQLESGGMKSFMKELKPQNLEDIIAGISLYRPGPMDFIPQYIKGK 645

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  + I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK  + M
Sbjct: 646  NHMDNITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKGDVM 705

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K+++ F+         G   NGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 706  KKERQSFVYGNEAEGVPGCIANGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 765

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K +YPVEF+AA MT  ++N  K+ ++    RQ  I+I+PP +N     F V +  I Y
Sbjct: 766  WLKYYYPVEFMAALMTSVIENPGKVSEYIYTCRQMGIEILPPDINKGEGSFSVDNGNIRY 825

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAAIK +G    + I+ E  A   F +++DF  R+  K++N+R +ES + +GA D  G 
Sbjct: 826  GLAAIKSIGKPVIQAILTEREARGEFKNMKDFIERLSGKEVNKRTIESFIKSGAFDSLGG 885

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I        K       ++F    E       I L          +   
Sbjct: 886  TRKQFMVIYVQILDQVNQERKYSMTGQMSLFDMVDEDQKAEFDIPLPDVGEYEKETKLAF 945

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--------RGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHP++ Y+   RK   K   +              G    +  M+  K  
Sbjct: 946  EKEVLGVYLSGHPMEEYEEKWRKSISKTTLDFQLVEDTGHTKVSDGAREIIGGMITDKTI 1005

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + +VT  +     E   FP
Sbjct: 1006 KYTKNNKVMAFVTLEDMLGSVEVVVFP 1032


>gi|291550544|emb|CBL26806.1| DNA polymerase III catalytic subunit, DnaE type [Ruminococcus torques
            L2-14]
          Length = 1157

 Score = 1083 bits (2801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1047 (35%), Positives = 580/1047 (55%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ +SLL+G+  +   + ++      + AITD   ++  ++F ++A   GI P
Sbjct: 2    SFAHLHVHTEFSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYREAKKQGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G         +VLL    EGY  L ++VS+ ++        
Sbjct: 62   ILGCEVYVAPNSRFDREITGG--DDRYYHLVLLAENEEGYANLTKIVSKGFVEG-YYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L++   +G+I L+   +G + R       + A+K  L ++++FG+   ++ LQ 
Sbjct: 119  RVDKELLRKYH-KGIIALSACLAGEVARFLTKGLYEEAKKTALEYQEIFGEGNFFLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     Q+ +++    + LVATN+  +   ED + HD+L+ +     +S ++R R
Sbjct: 178  HGIPEQGLVNQQLFKMSEETGIELVATNDIHYTYAEDAKPHDILLCIQTGKKLSDENRMR 237

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM+ +F    +ALENT +IA RC   ++     LP++   +       
Sbjct: 238  YDGGQYYVKSEEEMLRLFPYAKQALENTQKIADRCHVEIEFGVTKLPKYDVPDG----YT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+     GLE R        G  +++ ++RL +EL  I +M +  YFLIV DFI++
Sbjct: 294  SWEYLQKLCYEGLEKRY-------GDPSEELKERLSYELETIHQMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + I VGPGRGS AGS+ +Y L IT IDP+R+ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  AKDHGISVGPGRGSAAGSIVSYCLEITTIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG + VAQI+TFG+L A+  +RDVGR + +PY+ VD + K+IP +    
Sbjct: 407  RQEVIDYVTRKYGKDCVAQIVTFGTLAARGVIRDVGRVMDLPYAYVDSISKMIPQELGIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   ++    D +V  L++++++LEGL RH S HAAG+VI  +P+ + VP+ 
Sbjct: 467  ID-KALKMNPDLKKLYDTDETVTNLIDMAKRLEGLPRHCSMHAAGVVICQKPVDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            R        TQF M  +E+ GL+K DFLGL+TLT++Q ++    ++  +++++ I ++D 
Sbjct: 526  RAA-DGTITTQFIMTTLEELGLLKMDFLGLRTLTVIQNAVLLARRKQPELNINQIDYNDQ 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +    + T  T G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   KN
Sbjct: 585  KVLDYIGTGKTDGVFQLESAGMKGFMKELKPHNLEDVIAGISLYRPGPMDFIPQYIRGKN 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                I    P ++P+L  T G I+YQEQVMQI + L+GYSL  +D+LRRAM KK    M+
Sbjct: 645  DSSSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMSKKKAAVME 704

Query: 727  KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+++ FI         G  KNGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTAW
Sbjct: 705  KERKIFIYGDEETGVPGCIKNGIDEQTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTAW 764

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K ++PVE++AA MT  +DN  K+ ++    RQ NI+I+PP +N    +F V    I Y 
Sbjct: 765  LKYYFPVEYMAALMTSVIDNPSKVSEYIYACRQMNIKILPPDINKGEANFSVDGGDIRYG 824

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKL-NRRVLESLVFAGALDCFGY 896
            LAAIK +G    + I+E   +   F +LEDF +R+ +K + N+R +E+L+ AGALD  G 
Sbjct: 825  LAAIKSIGRPVIKAIVEDREELGLFQNLEDFITRLSAKNILNKRTIENLIKAGALDTLGG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVENSSVRFEN 954
            +R Q +     I  +    +KN       +F        ++  I +      +       
Sbjct: 885  TRKQFMSIYVQIVDHVTQEKKNSMVGQMTLFDLVSEDQKEEFQIRMPDVGEYSKETLLAF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+ Y+   +K       +              G    +  M+  K  
Sbjct: 945  EKEVLGIYVSGHPLEAYEEKWKKSISATTADFQLDEETGHTKVHDGAKEIIGGMITEKTI 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + ++T  +     E   FP
Sbjct: 1005 KHTKTNQMMAFITVEDLLGTVEVVVFP 1031


>gi|319897758|ref|YP_004135955.1| DNA polymerase iii alpha subunit [Haemophilus influenzae F3031]
 gi|317433264|emb|CBY81639.1| DNA polymerase III alpha subunit [Haemophilus influenzae F3031]
          Length = 1159

 Score = 1083 bits (2801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1048 (38%), Positives = 603/1048 (57%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYDEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG            +  +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGA----------DVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGY 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 111  N-DLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    +  R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP   T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +   
Sbjct: 229  KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL-- 286

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +      Y +RL  EL+VI +M F GYFLI
Sbjct: 287  ---STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +     Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A ++V+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAITKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|126733665|ref|ZP_01749412.1| DNA polymerase III subunit alpha [Roseobacter sp. CCS2]
 gi|126716531|gb|EBA13395.1| DNA polymerase III subunit alpha [Roseobacter sp. CCS2]
          Length = 1165

 Score = 1083 bits (2801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 496/1056 (46%), Positives = 687/1056 (65%), Gaps = 46/1056 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+ H+ YSLLEGA+ +  +   +A    PA+A+TD+NN+F ALEFS+ A  
Sbjct: 1    MTNDPRFIHLRTHTEYSLLEGAIPVKKLPGLVAGMGMPAVAVTDSNNMFCALEFSEGASK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPI+GCQ+D+        T +          IVLL  +  GY  L++L S  YL   
Sbjct: 61   AGIQPIVGCQVDVTF-----ATPEPGKRAEAPAPIVLLAQSEAGYMNLMKLNSCAYLDAD 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q  ++ L    +   EGLI L+GG  GP+ R         AE  +     ++ DRLY+
Sbjct: 116  G-QLPQVSLDEFAQYH-EGLICLSGGPDGPVGRLLRQGQRPKAEAIVDRLAAIYTDRLYI 173

Query: 185  NLQRHRGY-----DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             LQRH G      +R  E   V++AY   LPLVATN+  F   E YEAHD L+ ++    
Sbjct: 174  ELQRHPGDGLPEAERLSERGHVEMAYAKGLPLVATNDVYFPKTELYEAHDALICISEGAY 233

Query: 240  VSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            V Q++ R R+TP HY+K+  EM ++F+DLPEA+ENTVEIA+RC+F      PILP+F + 
Sbjct: 234  VDQQEARRRLTPQHYMKSPQEMATLFADLPEAIENTVEIAKRCAFKTYKRDPILPKFADD 293

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E          ELR +A  GL+ RLA   I      ++Y +RL+FEL +I  M F GYFL
Sbjct: 294  EV--------AELRRQAEQGLKDRLA--VIPHAAPVEEYEKRLEFELGIIEGMGFPGYFL 343

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFI+WAK   IPVGPGRGSGAGS+ AYAL ITD+DPLR+SLLFERFLNP+R+SMPDF
Sbjct: 344  IVADFIKWAKDEGIPVGPGRGSGAGSLVAYALLITDLDPLRYSLLFERFLNPERVSMPDF 403

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC DRR+EVIRYVQ+KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL K+
Sbjct: 404  DIDFCMDRREEVIRYVQDKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKM 463

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   PVS+ +A+AD+ R RE    +  VDRLL  +Q++EGL R+ASTHAAG+VIGDR
Sbjct: 464  IPVEGVKPVSIEKALADEPRLREEAKNEEVVDRLLTYAQQVEGLLRNASTHAAGVVIGDR 523

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ------ 591
            PL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + +      
Sbjct: 524  PLDELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVELIKKAGRPLN 583

Query: 592  ------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
                         G + D+  IP DD ++Y L ++  T  +FQ+ESSGM  AL+ M+P+C
Sbjct: 584  IAADGTQLYDVLEGFEYDIGAIPLDDEKSYALYSSAKTTAVFQVESSGMMDALKRMKPNC 643

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            IEDI+ALV+LYRPGP++NI  Y   KNG++ + SIHP ID +L ETQG+I+YQEQVM+IA
Sbjct: 644  IEDIVALVALYRPGPMENIPTYCEVKNGQKDLESIHPSIDHILAETQGIIVYQEQVMEIA 703

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q+++GYSL  AD+LRRAMGKKI EEM K++ +F +GA  NG+    A  +F+LL KFA+Y
Sbjct: 704  QVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEAGAKANGVEPKKAREVFDLLEKFANY 763

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMP 818
            GFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++   I+  P
Sbjct: 764  GFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLGIYFQEVKKGLGIEYTP 823

Query: 819  PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
            P VN     F V D ++ Y+L A+K VG    + I+E   DK F +L DF  R D K+++
Sbjct: 824  PCVNRSMATFDVKDQKLVYALGALKNVGVEAMKLIVEGRGDKEFVNLFDFARRCDLKRIS 883

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            +R LE L  AGA D    +R +++ SLD +  Y+  +   +++   ++F  + G    + 
Sbjct: 884  KRPLEMLARAGAFDVLDPNRRRVMMSLDALTAYSAAIHDQKSSNQVSLFG-DAGDDLQEP 942

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-ATIRGNN-IR 996
             L        + R   E + +GFY SGHPLD Y   L++  +   ++ +    +G   ++
Sbjct: 943  RLMGGEDWLPAERLAEEFKAIGFYLSGHPLDDYMGPLKRKQVLTLDDVIVRAGKGAAIVK 1002

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +A  +  +Q++K+ +G+R  +V  S+P  +YE   F
Sbjct: 1003 MAGTISGRQERKSARGNRFAFVQLSDPTGQYEVTMF 1038


>gi|302871937|ref|YP_003840573.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
            OB47]
 gi|302574796|gb|ADL42587.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
            OB47]
          Length = 1140

 Score = 1083 bits (2800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1033 (37%), Positives = 602/1033 (58%), Gaps = 30/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA  ++ + +++      A+AITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGAMYGVIDFYKAAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +               +  +VLL    +GY+ L ++VS  ++        
Sbjct: 62   IIGCEVYLAPRTRFDKEPNIDND---IHHLVLLAIDNDGYRNLSKIVSIGFVEG-FYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L +  ++GL+ LT   +G I +       +     +  +K++FG+  Y  LQ H
Sbjct: 118  RVDREVLSKY-SKGLVALTSCLAGEIPKLILREQKEKLYDAISFYKEVFGENFYFELQYH 176

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +  +++++L+  +++PLVATN+  +L +ED   HD+L+ +     ++  DR   
Sbjct: 177  YIDEQRFVNNELMRLSKKYQIPLVATNDVHYLKKEDRNLHDILLCIQTGKTINDSDRMEF 236

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +F  +PEAL+NT+EIA +C+   +     LP+F   E    + + 
Sbjct: 237  PTDEFYLKSSEEMHQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEG---KNDS 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+  A+ G + R ++              RL  EL VI  M F  YFLIV DFI +A
Sbjct: 294  FEYLKELALEGFKKRYSKNNKTAY-------DRLMMELQVIKDMGFVEYFLIVQDFINYA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+NNI VGPGRGS AGSV AY L IT++DP+++ LLFERFLNP+R+SMPD DIDFC  RR
Sbjct: 347  KQNNIMVGPGRGSAAGSVVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFCYQRR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP  P   +
Sbjct: 407  QEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGIPYSQVDEIAKMIPFSPGMTI 466

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   +     + +V ++++ ++ LEG+ RHAS HAAG+VI + P++ LVP+ R
Sbjct: 467  D-KALEINHELKRIYERNDTVRKIIDTARNLEGMPRHASVHAAGVVISNSPITDLVPLAR 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL  I ++D 
Sbjct: 526  --TDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDRIDYNDK 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y  ++   T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I VY   KN
Sbjct: 584  NVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +EKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM KK  + + 
Sbjct: 644  NREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKKKADILM 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            ++K+RFI GA  NG+ K  A  IF ++  FA Y FNKSHAAAYA+++YQTA++K +Y +E
Sbjct: 704  EEKDRFIEGAVANGVKKETAERIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKKYYTIE 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ + +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + L AIK +G
Sbjct: 764  FMTSLITSVMNSNEKVGMYIEECRKFGITILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823

Query: 847  TTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 HI++   +   F  L DF  RVD+  +N+R++E+L+ +GA D    +R  LL S+
Sbjct: 824  ENVIAHILKEREEKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTRINRNSLLASV 883

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            ++I        K +     + F    G  ++    +      +    + E+  +G Y S 
Sbjct: 884  EDIL--VLKQAKKKNANQFSFF-EISGNENESFEYKSLPQPTAQELMKMEKDTIGIYISS 940

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRG-----NNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            HPL+ Y   + +  +    E              I +  ++   + K T+    + +   
Sbjct: 941  HPLERYTEEISRYNVTPLSEISTMSEEDEYKFEQILVCGILKEVKVKLTKSNQTMAFAKL 1000

Query: 1021 SEPAKEYEANFFP 1033
             +     E  FFP
Sbjct: 1001 EDLTDSVEILFFP 1013


>gi|104783180|ref|YP_609678.1| DNA polymerase III subunit alpha [Pseudomonas entomophila L48]
 gi|95112167|emb|CAK16894.1| DNA polymerase III, alpha chain [Pseudomonas entomophila L48]
          Length = 1174

 Score = 1083 bits (2800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1063 (39%), Positives = 601/1063 (56%), Gaps = 56/1063 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL+VHS +SL++G + +  +   +A    PA+AITD +N+ S ++F + A  AGI
Sbjct: 2    SVSFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G  L +           G      +  I  L    +GY+ L EL+SR +   Q   
Sbjct: 62   KPICGADLWLA----------GADSEAPLSRICFLAMNPKGYRNLTELISRGWTDGQRNG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             V I   W+    +EGLI L+ G  G I  A        AE  L  +  +F +R YV +Q
Sbjct: 112  LVIIQRDWIA-PASEGLIALSAGKEGDIGMALMAGRQAEAEVLLGDWMGMFPERFYVEVQ 170

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R +R  D       V LA     PLVATN+  F+ + D++AH+  + +     +    RP
Sbjct: 171  RTNRAGDEEYVHAAVALADQFGAPLVATNDVRFVKQSDFDAHETRVCIGEGWTLDDPRRP 230

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  +   YLK+  EM  +FSDLP+A+ NTVEIA+RC+  +Q+    LP F       I  
Sbjct: 231  RGYSDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNITVQLGKYFLPDFPTPNGMGI-- 288

Query: 306  EEENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              ++ LR+ +  GLE RLA     +         Q Y  RL FEL++I +M F GYFLIV
Sbjct: 289  --DDYLRHVSHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIV 346

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+
Sbjct: 347  MDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDV 406

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI YV   YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP
Sbjct: 407  DFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP 466

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +    +  +A   +   R+   +D     + +++ KLEG+ R    HA G+VI    L+
Sbjct: 467  FEVGMTLE-KAYEQEEILRDFLKSDEDGREIWDMALKLEGVTRGTGKHAGGVVIAPTKLT 525

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVK 595
               P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ +           
Sbjct: 526  DFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQKKNNLPD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            V++  IP DD +TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+
Sbjct: 586  VNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPL 645

Query: 656  DNIVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 646  QSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKF 825

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V D  RI Y L AIKGVG      I+EA A   PF  L DFC R+D K++N+R L++L+
Sbjct: 826  TVNDEGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALI 885

Query: 887  FAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--H 929
             +GALD  G                +R  LL +L    K A+       + H ++F    
Sbjct: 886  RSGALDRLGPHFHDEIKAYQANIDINRATLLSALGEAVKAAEQAAHTADSGHVDLFGSMF 945

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
            ++          K        R + E+  LG Y +GHP+D Y+  +R+   +   +    
Sbjct: 946  DEADVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPA 1005

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   +A M+++ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1006 RDTQ--TIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046


>gi|323700171|ref|ZP_08112083.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. ND132]
 gi|323460103|gb|EGB15968.1| DNA polymerase III, alpha subunit [Desulfovibrio desulfuricans ND132]
          Length = 1184

 Score = 1083 bits (2800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1050 (40%), Positives = 612/1050 (58%), Gaps = 36/1050 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA+ +N++L +      PA+AITD  ++F A+ F   A   GI+PI
Sbjct: 4    FVHLHVHTEYSLLDGAIRINDLLTRAKDLGMPAVAITDHGSMFGAVVFYMAAKELGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +   D        +        ++LL     GY+ LI+LVS  YL D      R
Sbjct: 64   IGCEVYVAEGDVDDEEAHLRKEHGGGYHLILLAKNQRGYKNLIKLVSTGYL-DGFYYKPR 122

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    L++  +EGLI L+   +G I R       +       T++ +F    Y+ LQ + 
Sbjct: 123  VSKHLLKKY-SEGLIALSACLAGEIPRKLMNEGLEAGADMARTYESIFPGNFYLELQDNG 181

Query: 191  GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS-QKDRPRV 248
               + R +++ V+ A    LPLVATN+  +L+ ED+EAHD L+ +   T V  +K     
Sbjct: 182  IGKQTRLNELLVKCAEKTGLPLVATNDCHYLTAEDFEAHDTLLCIQTQTTVDAEKRFRME 241

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K   EM   F+ +PEA+ NT  IA +C+  +++     P +   E   + +E E
Sbjct: 242  TKELYFKTPEEMEKAFAHVPEAILNTQRIAEQCNLEIELGNYYFPEYKLPEGVSMNEEFE 301

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
                     GL+ RL    I        Y +RLD+EL VI +M F  YFLIV DFI WAK
Sbjct: 302  ----RLCREGLQRRL--NTITYEVDEGKYWKRLDYELGVIKQMGFPAYFLIVQDFINWAK 355

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             + IPVGPGRGS AGS+ A++L IT++DPL + LLFERFLN +R+SMPD D+DFC+ RR 
Sbjct: 356  DHRIPVGPGRGSAAGSIVAWSLKITNLDPLPYDLLFERFLNVERVSMPDIDVDFCERRRL 415

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EV++Y   KYG +RVAQI TFG+++ KA ++DVGRAL M + + DR+ KLIP+DPA    
Sbjct: 416  EVVKYCAEKYGVDRVAQITTFGTMKTKAVIKDVGRALGMSFGETDRIAKLIPDDPAVMAK 475

Query: 489  L-----------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L            A+   +   +    DP V +L++IS +LEGL RHASTHAAG+VI ++
Sbjct: 476  LLGVEKAKITVPNAVKAVTELDDMVATDPKVAKLIDISTRLEGLCRHASTHAAGVVISNK 535

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKV 596
            P+++ +P+Y+  + +  VTQF+MK +EK GLIKFDFLGL+T+T+++  LD +  Q     
Sbjct: 536  PMTEYLPLYKGKKGE-IVTQFDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIREQGKKAP 594

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL  +  DD ET+ +     T GIFQ+ESSGMR+ L  + PDC EDI+A+++LYRPGP+ 
Sbjct: 595  DLETLHLDDPETFAIFAKGDTDGIFQVESSGMRKYLRMLGPDCFEDIVAMLALYRPGPLG 654

Query: 657  NI--------VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             I          +  RK+G+  +   HP ++  LK T GV++YQEQVM  A +++ YSL 
Sbjct: 655  MIGSHGVSMVDEFIMRKHGEIAVTYPHPSLEETLKPTYGVMVYQEQVMATAMVIANYSLG 714

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E D+LRRAMGKKI EEM KQ+ RF+ G+ +NGI   +A +IF+ + KFA YGFNKSH+AA
Sbjct: 715  EGDLLRRAMGKKIAEEMAKQRSRFLEGSRENGIDDAVANDIFDTMEKFAAYGFNKSHSAA 774

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+ISY TA++K H+PVEF+AA M+ EM+N +KI  +    R  +I +  P +N     F
Sbjct: 775  YALISYHTAYLKAHFPVEFMAALMSTEMNNTDKIIMYVNACRDMDITVRQPDINAGQARF 834

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V +  I +++AAIK VG      I+   A+  PF ++ DFC RV+ +++ +RVLESL+ 
Sbjct: 835  SVKNGEILFAMAAIKNVGEEAINEIVAERAEQGPFLNIFDFCERVNLRRVTKRVLESLIK 894

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKF 943
            AGALDCF  SR  LL+ LD      Q   K + +   N+        K   + + T    
Sbjct: 895  AGALDCFSCSRAALLEDLDKAVALGQKKAKEKESGMLNMLDLLGGGGKSDATAQPTCSLC 954

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                   + + E+ VLGF+ SGHPL  Y+  ++++     E+      G  +R+A ++  
Sbjct: 955  EEFEDREKLQLEKEVLGFFLSGHPLLAYRHDMQRLRTVTLEDCKTIPNGTEVRVAVIIPD 1014

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +Q  TRKG  + +    +     E    P
Sbjct: 1015 FKQHITRKGDPMAFCNAEDLTTYGEITMLP 1044


>gi|291520859|emb|CBK79152.1| DNA polymerase III catalytic subunit, DnaE type [Coprococcus catus
            GD/7]
          Length = 1156

 Score = 1083 bits (2800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1047 (35%), Positives = 564/1047 (53%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL VH+ YSLL+G+  +  ++ ++      ++AITD   ++  ++F ++A   GI P
Sbjct: 2    DFTHLHVHTEYSLLDGSNKIKELIARVKELGMDSVAITDHGVMYGVIDFYKEAQKQGIHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ +        +  G         +VLL     GY  L+++VS+ +         
Sbjct: 62   VIGCEVYVAPGSRFDKS--GNMSSNRYHHLVLLAENDTGYHNLMKIVSKGFTEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L+E   EG+I L+   +G I  A      Q A        ++F  D  Y+ LQ 
Sbjct: 119  RVDKELLKEYH-EGIIALSACLAGEIPDALRKGLYQTALNAAQEMSEIFGEDHFYLELQD 177

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+   +Q +++LA    L LVATN+  +   ED +AHDVL+ +     V+  DR R
Sbjct: 178  HGIPDQKTVNQGLLRLAKDTGLELVATNDIHYTLAEDAQAHDVLLCIQTGKKVADTDRMR 237

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM S+F    EA+ENT +IA RC   ++     LP F   E  D    
Sbjct: 238  YEGGQYYVKSPEEMASLFPYAREAIENTHKIAMRCHVDIEFGHYKLPEFPVPEGYD---- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+     G   R  Q         +  ++R+ +ELN I  M F  YFLIV DFI +
Sbjct: 294  SWEYLQKLVWDGFYERYPQA-------DEKLKERVSYELNTIKTMGFVDYFLIVWDFIHY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+++I VGPGRGS AGS+ +Y L IT +DP+R++LLFERFLNP+R++MPD D+DFC +R
Sbjct: 347  AKEHDIMVGPGRGSAAGSIVSYCLDITTLDPIRYNLLFERFLNPNRVTMPDIDVDFCFER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG ERV QI+TFG++ A+  +RDVGR L +PY+  D + K+IPN+    
Sbjct: 407  RQEVIDYVVRKYGKERVVQIVTFGTMAARGVIRDVGRVLDLPYAICDSVAKMIPNELGIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   ++    D S+  L++++++LEGL RH S HAAG+VI  + + + VP+ 
Sbjct: 467  ID-KALKMNPELKKLYDGDDSIHNLIDMARRLEGLPRHTSMHAAGVVISPKAVDEFVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDD 605
            R    D+  TQ+ M  +E+ GL+K DFLGL+TLT+++ ++  +   G    D+  I ++D
Sbjct: 526  RGA-DDVITTQYTMTTLEELGLLKMDFLGLRTLTVIRNAVKLINADGRHHVDMHEIDYND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
               + ++ T  T GIFQLESSGM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 585  KAVFDMIGTGKTDGIFQLESSGMKSFMKELKPHNLEDIIAGISLYRPGPMDFIPRYIKGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N    I    P ++ +L+ T G I+YQEQVMQI   L+GY L  +D++RRAM KK  + M
Sbjct: 645  NEPASITYECPQLEEILEPTYGCIVYQEQVMQIVMKLAGYDLGRSDLVRRAMSKKKADVM 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K+++ F+         G   NGI +  A  IF+ +  FA Y FNKSHAAAY ++SYQTA
Sbjct: 705  AKERQYFVYGNDELGVPGCIANGIDEATANRIFDEMTDFAKYAFNKSHAAAYTIVSYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K +YPVEF+AA MT  +DN  K+ ++    RQ  I+I+PP +N     F V + RI Y
Sbjct: 765  WLKYYYPVEFMAALMTSVIDNSVKVAEYIMTCRQMGIKILPPDINHGVSSFSVDNGRILY 824

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+A+K +G      I +      PF SL++F  R+  K++N+R +E+ + AGA D FG 
Sbjct: 825  GLSAVKSIGRPVVAAIEQERTLAGPFTSLKNFIERMSGKEVNKRSIENFIKAGAFDSFGA 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I        K   +    +F    E+   + +I        +       
Sbjct: 885  TRRQQMMVYAQIMDQVAQDRKKNISGQMTLFDFMDEEEKQAFEIRYPNVGEYDKGTLLSF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPLD      R+       +            +  + + +  MV  K  
Sbjct: 945  EKEVLGVYISGHPLDDVAESWRRNVTAVTSDFYVNEESGMPNVVDQSLVVIGGMVTGKTV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + ++   +     E   FP
Sbjct: 1005 KSTKNNKMMAFIQLEDLLGTVEVIIFP 1031


>gi|327399548|ref|YP_004340417.1| DNA polymerase III subunit alpha [Hippea maritima DSM 10411]
 gi|327182177|gb|AEA34358.1| DNA polymerase III, alpha subunit [Hippea maritima DSM 10411]
          Length = 1133

 Score = 1083 bits (2800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1033 (39%), Positives = 613/1033 (59%), Gaps = 32/1033 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  HS YSLL+GA  + ++++K      PA+A+TD  N+F ALEF + A + GI+P
Sbjct: 2    AFVHLHNHSEYSLLDGASRIKHMVEKAKNSGMPAVALTDHGNMFGALEFYKTAKSNGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +  I        T            I LL    +GY+ ++ L S  +L        
Sbjct: 62   ILGFEGYISP------TTLDDKQTKGNYHITLLAKNKKGYENIMYLCSMAFLKG-FYYKP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI  + L+E  +EG+I  +    G +      N  + A+K +  +K++F  +  ++ + R
Sbjct: 115  RIDKNLLRE-HSEGIIAGSACLHGEVQLRLLDNDFEGAKKVVQEYKEIFGKENFFLEIMR 173

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
            H   D+ R + ++++L    + P+VATN+  +L++ED  A D L+ V  +  +  +DR  
Sbjct: 174  HGLEDQQRIDKEIIRLGLETDTPIVATNDCHYLNKEDAIAQDALLCVQTNKHLDDQDRMK 233

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              + + Y K   EM+ +F D PE + N+  IA  C+  L++     P +   +  D    
Sbjct: 234  MGSQEFYFKTEEEMLEVFKDNPEFVHNSKVIADMCNVELELGKLAPPHYRTPDGSD---- 289

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E+  LR  A  GLE + A     K    + Y++RL+ EL +I +M FSGYFLIV DF+ +
Sbjct: 290  EKEYLRRLAYKGLEEKTAGFDNGKK---ELYKKRLEHELAIIEQMGFSGYFLIVWDFVNY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+N IPVGPGRGS AGS+ +Y++ ITDIDP++++LLFERFLNP+R++MPD D+DFC +R
Sbjct: 347  AKRNGIPVGPGRGSAAGSLVSYSIGITDIDPIKYNLLFERFLNPERVTMPDIDVDFCAER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV+ KYG   VAQ+ITFG++ AKA +RDV R +  PY + DR+ K+IPN     
Sbjct: 407  RDEVIHYVREKYGEYNVAQVITFGTMGAKAVVRDVARVMGFPYKEADRIAKMIPNGEDLD 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                AI  +++ ++    D +V +L EIS+ LEG+ RHAS HAAG+VI   P+ +  P+Y
Sbjct: 467  ---GAIKSNTQLKQEIEKDDNVKKLFEISKTLEGVKRHASIHAAGVVISTEPIYKSCPLY 523

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            +    D    QF+  ++E  GLIKFDFLGLK LT++  ++  +       D+S IP DD 
Sbjct: 524  KAPGEDTIAVQFSKDFLEDIGLIKFDFLGLKNLTVIDTTVKLIGN---GFDISKIPLDDK 580

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
            ETY LL    TLG+FQLESSGM++ +  ++P   ED+IALV+LYRPGP+ + +V  + +R
Sbjct: 581  ETYKLLQKGDTLGVFQLESSGMQRLIMDLKPTVFEDLIALVALYRPGPLGSGMVQDFIDR 640

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK+ I    P ++ +LK+T G+I+YQEQVMQIA  L+GYSL EAD+LRRAMGKK KE 
Sbjct: 641  KHGKKPIEYPLPELEGILKDTYGIILYQEQVMQIASKLAGYSLGEADILRRAMGKKKKEV 700

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MD+Q+  F+  A + G+SK  A  IF+L+AKFA+YGFNKSH+AAYA I+YQTA++K HYP
Sbjct: 701  MDQQRGIFVKRAVERGVSKEKAEEIFDLMAKFAEYGFNKSHSAAYAYIAYQTAYLKAHYP 760

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLA 840
              F++A +T E +N + I K+ ++  +  I ++PP +N    DF V    G   I +  +
Sbjct: 761  AYFMSALLTSEKNNTDNIAKYIEECNRMKITVLPPDINDSFHDFAVAEKDGKKVIRFGFS 820

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIK VG     +I+E   +  F+S+ DF  R D++K+N++VLESL+ +G  D    +R  
Sbjct: 821  AIKNVGDAAIENIIEIRKESKFESIFDFLKRTDTRKVNKKVLESLIKSGCFDSLHQNRAT 880

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL S+D +  +     K    K   +F   K        L            E E+ +LG
Sbjct: 881  LLASVDVLLDWVSTNAKKANKKMVALFGSTK-QEEAYPELIDVEELTQEKILEYERELLG 939

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            F+ S +PL  Y+ ++  + I    E+ +T+    + +A + V+ ++ KT++   +  V F
Sbjct: 940  FFVSSNPLSKYENMVNAV-ITADSETASTVFDKEVVMAGIPVAIRKMKTKRKESMAIVKF 998

Query: 1021 SEPAKEYEANFFP 1033
             +    +EA  FP
Sbjct: 999  MDLKGTFEATVFP 1011


>gi|77360939|ref|YP_340514.1| DNA polymerase III subunit alpha [Pseudoalteromonas haloplanktis
            TAC125]
 gi|76875850|emb|CAI87071.1| DNA polymerase III, alpha subunit; the entire polymerase contains 10
            subunits [Pseudoalteromonas haloplanktis TAC125]
          Length = 1163

 Score = 1083 bits (2800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 431/1047 (41%), Positives = 602/1047 (57%), Gaps = 42/1047 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS +S+++G      I+ K    Q PAIAITD  NL   + F + A + GI
Sbjct: 3    APDFVHLRVHSDFSMVDGLAKTKPIVAKAQELQMPAIAITDQMNLCGLVRFYETAHSTGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+G    +          +          I +L    +GY+ L  L+S+ Y       
Sbjct: 63   KPIVGADFWL----------RSPEFENEPSRITILAKDNQGYKNLTLLISKAYQRGHVFH 112

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL E+   GLI+L+G   G + +A   N+  V E  +  +K+ F D  Y+ L 
Sbjct: 113  RPVIDRDWLIEL-KAGLIILSGAKDGDLGKALLKNNPSVIESVVSFYKQHFSDNYYLELV 171

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R +R  +       V+LA   +LP+VATN  +FL  E++EAH++ +A+     +  K RP
Sbjct: 172  RTNRPLEEDYLHMAVELAAKEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDKRRP 231

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R + + YLK   +M  +FSD+PEAL+NTVEIA+RC+  +Q+    LP +          
Sbjct: 232  KRFSEEQYLKTPEQMAELFSDIPEALQNTVEIAKRCNVTVQLGTYFLPDYPTGSL----- 286

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            + E+ L   +  GLE RL         +     +Y +RLD EL VI  M F GYFLIV +
Sbjct: 287  KIEDFLVKVSQDGLEERLQFLFPDEQERKEKRVEYDERLDIELGVINEMGFPGYFLIVME 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERISMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRRDEVI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ K+IP D
Sbjct: 407  CMDRRDEVIDHVSALYGRNAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMIPGD 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A   + R +EA   D  V  L+++ + LEG  R+A  HA G+VI    ++  
Sbjct: 467  PGMTL-AKAFDIEPRLQEAYDGDNEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTITDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVD 597
              +Y D     PVTQF+   +E AGL+KFDFLGL+TLT+LQ +LD   +R        VD
Sbjct: 526  AALYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWALDMTNERLARTGKEPVD 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD ++  LL    T  +FQLES GM+  +  ++PD  ED+IALV+L+RPGP+ +
Sbjct: 586  INTIPLDDKKSIELLLRAETTAVFQLESRGMKDLVRRLKPDSFEDMIALVALFRPGPLQS 645

Query: 658  IV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +   + +RK G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  A
Sbjct: 646  GMVDNFIDRKLGREEISYPDAQYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  F  GA  NGI   +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DMLRRAMGKKKPEEMAKQRSTFEDGARNNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT WMKTH+P EF+AA M+ +MDN +KI     +     + ++PP VN     F V
Sbjct: 766  LVSYQTLWMKTHHPAEFMAAVMSADMDNTDKIVILVDECENMKLTLLPPDVNAGEFKFTV 825

Query: 831  G-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                 I Y + AIKGVG      I+EA A   PF  L DFC+RVD K+LN+RV E L+++
Sbjct: 826  NLQGEIVYGIGAIKGVGEAPVEAILEARAKGGPFKDLFDFCARVDLKRLNKRVTEKLIYS 885

Query: 889  GALDCFGYS-----RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEK 942
            GALD  G       R  LL SL +  + A    K       ++F        + +    K
Sbjct: 886  GALDQLGPEKTQSGRATLLASLKSAMRAADQHNKAELLGQSDLFGLLATEPDEVEQAFIK 945

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             +    +   + E+  LG Y +GHP++ Y+  L+        +   T R      A +V+
Sbjct: 946  ATGLTDNEWLDGEKETLGLYLTGHPINQYRRELKYYTSGKLVDLQPTNRDVVSTAAGLVI 1005

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            S +    +KG+R   +T  + +   + 
Sbjct: 1006 SARVLINKKGNRWALITLDDKSARIDV 1032


>gi|148549377|ref|YP_001269479.1| DNA polymerase III subunit alpha [Pseudomonas putida F1]
 gi|148513435|gb|ABQ80295.1| DNA polymerase III, alpha subunit [Pseudomonas putida F1]
          Length = 1174

 Score = 1083 bits (2800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1063 (39%), Positives = 599/1063 (56%), Gaps = 56/1063 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL+VHS +SL++G + +  +   +     PA+AITD +N+ S ++F + A  AGI
Sbjct: 2    SVPFVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G  L +           G  P   +  I  L    +GY+ L EL+SR +   Q   
Sbjct: 62   KPICGADLWLA----------GADPEAPLSRICFLAMNPKGYRNLTELISRGWTDGQRNG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             V +   W+    +EGLI L+ G  G I  A        AE  L  +  +F +R YV +Q
Sbjct: 112  LVILQREWIA-PASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQ 170

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R +R  D       V LA     PLVATN+  F+ + D++AH+  + +     +    RP
Sbjct: 171  RTNRARDEEYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRP 230

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               +   YLK+  EM  +FSDLP+A+ NTVEIA+RC+  +Q+    LP F       I  
Sbjct: 231  RCYSDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI-- 288

Query: 306  EEENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              ++ LR+ +  GLE RLA     +         Q Y  RL FEL++I +M F GYFLIV
Sbjct: 289  --DDYLRHVSHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIV 346

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+
Sbjct: 347  MDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDV 406

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI YV   YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP
Sbjct: 407  DFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP 466

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +    +  +A   +   R+    D     + +++ KLEG+ R    HA G+VI    L+
Sbjct: 467  FEVGMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLT 525

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVK 595
               P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ +      +    
Sbjct: 526  DFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +++  IP DD +TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+
Sbjct: 586  LNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPL 645

Query: 656  DNIVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 646  QSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKF 825

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V +  RI Y L AIKGVG      I+EA A   PF  L DFC R+D K++N+R L++LV
Sbjct: 826  TVNNDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALV 885

Query: 887  FAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--H 929
             +GALD  G                +R  LL +L    K A+       + H ++F    
Sbjct: 886  RSGALDRLGPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMF 945

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
            +           K        R + E+  LG Y +GHP+D Y+  +R+   +   +   +
Sbjct: 946  DAADVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPS 1005

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   +A M+++ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1006 RETQ--TIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046


>gi|167032174|ref|YP_001667405.1| DNA polymerase III subunit alpha [Pseudomonas putida GB-1]
 gi|166858662|gb|ABY97069.1| DNA polymerase III, alpha subunit [Pseudomonas putida GB-1]
          Length = 1174

 Score = 1083 bits (2800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1063 (39%), Positives = 601/1063 (56%), Gaps = 56/1063 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL+VHS +SL++G + +  +   +A    PA+AITD +N+ S ++F + A  AGI
Sbjct: 2    SVPFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G  L +           G  P   +  I  L    +GY+ L EL+SR +   Q   
Sbjct: 62   KPICGADLWLA----------GADPEAPLSRICFLAMNPQGYRNLTELISRGWTDGQRNG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             V +   W+    +EGLI L+ G  G I  A        A+  L  +  +F +R YV +Q
Sbjct: 112  LVILQREWIA-PASEGLIALSAGKEGDIGMALLNGRDDEAQALLQDWMGMFPERFYVEVQ 170

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R +R  D       V LA     PLVATN+  F+ + D++AH+  + +     +    RP
Sbjct: 171  RTNRARDEEYVHAAVALADKFGAPLVATNDVRFIKQSDFDAHETRVCIGEGWTLDDPRRP 230

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  +   YLK+  EM  +FSDLP+A+ NTVEIA+RC+  +Q+    LP F       I  
Sbjct: 231  RGYSDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI-- 288

Query: 306  EEENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              ++ LR+ +  GLE RLA               Q Y  RL FEL++I +M F GYFLIV
Sbjct: 289  --DDYLRHVSYEGLEERLAVLWPKDTTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIV 346

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+
Sbjct: 347  MDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDV 406

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI YV   YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP
Sbjct: 407  DFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP 466

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +    +  +A   +   R+   +D     + +++ KLEG+ R    HA G+VI    L+
Sbjct: 467  FEVGMTLE-KAYEQEEILRDFLKSDEDGREIWDMALKLEGVTRGTGKHAGGVVIAPTKLT 525

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVK 595
               P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ +           
Sbjct: 526  DFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKNNLPD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +++  IP DD +TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+
Sbjct: 586  LNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPL 645

Query: 656  DNIVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 646  QSGMVDDFINRKHGRAELAYPHADYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKF 825

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V +  RI Y L AIKGVG      I+EA A   PF  L DFC R+D K++N+R L++LV
Sbjct: 826  TVNNDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCDRIDLKRVNKRTLDALV 885

Query: 887  FAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--H 929
             +GALD  G                +R  LL +L    K A+       + H ++F    
Sbjct: 886  RSGALDRLGPHFHDEIKAYQANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMF 945

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
            ++          K        R + E+  LG Y +GHP+D Y+  +R+   +   +   +
Sbjct: 946  DEAQVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIIDLKPS 1005

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   +A M+++ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1006 RETQ--TIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046


>gi|153815935|ref|ZP_01968603.1| hypothetical protein RUMTOR_02180 [Ruminococcus torques ATCC 27756]
 gi|317500700|ref|ZP_07958918.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|145846754|gb|EDK23672.1| hypothetical protein RUMTOR_02180 [Ruminococcus torques ATCC 27756]
 gi|316897894|gb|EFV19947.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 1157

 Score = 1083 bits (2800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1047 (36%), Positives = 589/1047 (56%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F ++A + GI P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMYGVIDFYREAKSQGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G         +VLL    EGY  L+++VS+ ++        
Sbjct: 62   ILGCEVYVAPNSRFDREVTGGE--DRYYHLVLLAENNEGYANLMKIVSKGFVEG-YYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L++  + G+I L+   +G + R         A+K  L ++ +F  D  Y+ LQ 
Sbjct: 119  RVDKELLRKYHS-GIIALSACLAGEVSRYLMKGLYDEAKKAALEYRDIFGKDHFYLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+     Q+++++    + LVATN+  +   +D +AHD+L+ +     ++ ++R R
Sbjct: 178  HGLPDQGLVNQQLLKMSRETGIELVATNDVHYTYAKDEKAHDILLCIQTGKRLADENRMR 237

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM S+F    +ALENT +IA RC   ++     LP++   +       
Sbjct: 238  YEGGQYYIKSEEEMKSLFPYALQALENTQKIADRCLVEIEFGVTKLPKYDVPDG----YT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     GLE R A+        A + R+RLD+EL  I  M +  YFLIV DFI++
Sbjct: 294  SWEYLRKLCYEGLEKRYAE-------RADELRERLDYELGTIKNMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + I VGPGRGS AGS+ +Y L IT IDP+R+ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  AKDHGIAVGPGRGSAAGSIVSYCLGITTIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG+L A+  +RDVGR + MPY+ VD + K+IP +P   
Sbjct: 407  RQEVIDYVVGKYGKDRVVQIVTFGTLAARGVIRDVGRVMDMPYAFVDSIAKMIPQEPKMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   R+    D  V  L+E++++LEGL RH+S HAAG+VI  + + + VP+ 
Sbjct: 467  IE-KALKVNPELRKMCEDDEEVKYLIEMAKRLEGLPRHSSMHAAGVVISQKSVDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            R        TQF M  +E+ GL+K DFLGL+TLT++Q ++    ++   V++  + +DD 
Sbjct: 526  RAA-DGSVTTQFTMTTLEQLGLLKMDFLGLRTLTVIQNAVLMARKKDPSVNMDTLDYDDK 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +    + T  T GIFQLES+GM+  ++ ++P+ +ED+IA +SLYRPGP+D I  Y   KN
Sbjct: 585  KVLEYIGTGKTDGIFQLESAGMKSFMKELKPNSLEDMIAGISLYRPGPMDFIPQYIKGKN 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                I    P ++P+L  T G I+YQEQVMQI + L+GYSL  +D+LRRAM KK  EEM 
Sbjct: 645  DASSISYDCPQLEPILNSTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMSKKKGEEMK 704

Query: 727  KQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            ++++ F        I G  KNGI + +A  I++ +  FA+Y FNKSHAAAYAV++YQTAW
Sbjct: 705  RERQIFLYGDEASGIPGCVKNGIDEQVANKIYDEMLDFANYAFNKSHAAAYAVVAYQTAW 764

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPVE++AA MT  +DN  K+ ++   +RQ  IQI+PP +N    DF V +  I Y 
Sbjct: 765  LKYYYPVEYMAALMTSVIDNPSKVAEYIYASRQMGIQILPPDINNGEADFSVDEGNIRYG 824

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK-KLNRRVLESLVFAGALDCFGY 896
            L+AIK VG    R ++E      P+ +LEDF +RV SK  LN+R +E+L+ AGALD  G 
Sbjct: 825  LSAIKSVGRPVVRAMLEERRTFGPYKNLEDFITRVSSKEGLNKRTIENLIKAGALDTLGG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I  +    +K   +   ++F    E+     +I +      +   +   
Sbjct: 885  TRKQFMSIYIQIMDHVNQEKKYSMSGQMSLFDLVGEEEKADFQIRMPDVGEYSKENKLAF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+ ++   R+M      +              G    +  M+V K  
Sbjct: 945  EKEVLGVYISGHPLEEHEERWRRMISATTADFQFDEELNRTKVHDGEKSVVGGMIVDKTV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + ++T  +     E   FP
Sbjct: 1005 KYTKTNQVMAFLTLEDLLGTVEVVIFP 1031


>gi|315127143|ref|YP_004069146.1| DNA polymerase III subunit alpha [Pseudoalteromonas sp. SM9913]
 gi|315015657|gb|ADT68995.1| DNA polymerase III subunit alpha [Pseudoalteromonas sp. SM9913]
          Length = 1163

 Score = 1082 bits (2799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1051 (40%), Positives = 603/1051 (57%), Gaps = 42/1051 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS +S+++G      I+ K    + PA+AITD  N    + F   A  AGI
Sbjct: 3    APEFVHLRVHSDFSMVDGLAKTKPIVAKAQELEMPALAITDQMNFCGLVRFYGAAHNAGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+G    +          +          + LL     GY+ +  L+S+ Y       
Sbjct: 63   KPIVGADFWV----------RSPEFPDEPSRLTLLAKDNIGYKNITLLISKAYQRGHVFH 112

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL ++  EGLI+L+G   G + +A    +  + E  +  +K+ F D  Y+ L 
Sbjct: 113  RPVIDREWLVDL-KEGLIILSGAKDGDLGKALIKGNPAIVESVVSFYKQHFSDHYYIELI 171

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R +R  +       V+LA   +LP+VATN  +FL  E++EAH++ +A+     +  K RP
Sbjct: 172  RTNRAQEENYLHMAVELATNEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDKRRP 231

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R + + YLK   +M  +FSD+PEAL+NTVEIA+RC+  +Q+    LP +          
Sbjct: 232  KRFSQEQYLKTPEQMAELFSDIPEALQNTVEIAKRCNVTVQLGEYFLPDYPTGSL----- 286

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            + +  L   +  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +
Sbjct: 287  KIDEFLVKVSQDGLEERLQFLFPDEQERQEKRGEYDERLKIELDVINQMGFPGYFLIVME 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP D
Sbjct: 407  CMDRRDEVIDHVSALYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPGD 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A   + R +EA   D  V  L+++ + LEG  R+A  HA G+VI    ++  
Sbjct: 467  PGMTL-AKAFDVEPRLQEAYDGDEEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTITDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVD 597
              +Y D     PVTQF+   +E AGL+KFDFLGL+TLT+LQ +LD   +R        VD
Sbjct: 526  AALYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWALDMTNERLKREGKQPVD 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD ++  LL    T  +FQLES GM+  +  ++PDC ED+IALV+L+RPGP+ +
Sbjct: 586  INTIPLDDKKSIELLLRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGPLQS 645

Query: 658  IV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +   + +RK G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  A
Sbjct: 646  GMVDNFIDRKLGREEISYPDAQYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  F  GA  NGI   +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DMLRRAMGKKKPEEMAKQRSTFEEGARNNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT WMKTHYP EF+AA M+ +MDN +KI     +     + ++PP VN     F V
Sbjct: 766  LVSYQTLWMKTHYPAEFMAAVMSADMDNTDKIVTLVDECENMKLTLLPPDVNAGEYKFTV 825

Query: 831  G-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                 I Y + AIKGVG      I+EA A   PF  L DFC+RVD K+LN+RV E L++A
Sbjct: 826  NLQGEIVYGIGAIKGVGEAPVDAILEARAKGGPFKDLFDFCARVDLKRLNKRVTEKLIYA 885

Query: 889  GALDCFGYS-----RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEK 942
            GALD  G       R  LL SL +  + A    K       ++F        + +    K
Sbjct: 886  GALDQLGPEKTQPGRATLLASLKDAMRAADQHNKAELLGQSDLFGLLATEPDEVEQAFIK 945

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             +    +   + E+  LG Y +GHP++ Y+  L         +   T R      A +V+
Sbjct: 946  ATPLTDNQWLDGEKDTLGLYLTGHPINQYRRELGHYTSGRLIDLQPTNRDVVSTGAGLVI 1005

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +    +KG+R G +T  + +   +   FP
Sbjct: 1006 AARTLINKKGNRWGLITLDDKSARIDVRLFP 1036


>gi|331089825|ref|ZP_08338718.1| hypothetical protein HMPREF1025_02301 [Lachnospiraceae bacterium
            3_1_46FAA]
 gi|330403522|gb|EGG83080.1| hypothetical protein HMPREF1025_02301 [Lachnospiraceae bacterium
            3_1_46FAA]
          Length = 1157

 Score = 1082 bits (2799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1047 (36%), Positives = 589/1047 (56%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F ++A + GI P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMYGVIDFYREAKSQGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G         +VLL    EGY  L+++VS+ ++        
Sbjct: 62   ILGCEVYVAPNSRFDREVTGGE--DRYYHLVLLAENNEGYANLMKIVSKGFVEG-YYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L++  + G+I L+   +G + R         A+K  L ++ +F  D  Y+ LQ 
Sbjct: 119  RVDKELLRKYHS-GIIALSACLAGEVSRYLMKGLYDEAKKAALEYRDIFGKDHFYLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+     Q+++++    + LVATN+  +   +D +AHD+L+ +     ++ ++R R
Sbjct: 178  HGLPDQGLVNQQLLKMSRETGIELVATNDVHYTYAKDEKAHDILLCIQTGKRLADENRMR 237

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM S+F    +ALENT +IA RC   ++     LP++   +       
Sbjct: 238  YEGGQYYIKSEEEMKSLFPYALQALENTQKIADRCLVEIEFGVTKLPKYDVPDG----YT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     GLE R A+        A + R+RLD+EL  I  M +  YFLIV DFI++
Sbjct: 294  SWEYLRKLCYEGLEKRYAE-------RADELRERLDYELGTIKNMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + I VGPGRGS AGS+ +Y L IT IDP+R+ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  AKDHGIAVGPGRGSAAGSIVSYCLGITTIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG+L A+  +RDVGR + MPY+ VD + K+IP +P   
Sbjct: 407  RQEVIDYVVRKYGKDRVVQIVTFGTLAARGVIRDVGRVMDMPYAFVDSIAKMIPQEPKMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   R+    D  V  L+E++++LEGL RH+S HAAG+VI  + + + VP+ 
Sbjct: 467  IE-KALKVNPELRKMCEDDEEVKYLIEMAKRLEGLPRHSSMHAAGVVISQKSVDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            R        TQF M  +E+ GL+K DFLGL+TLT++Q ++    ++   V++  + +DD 
Sbjct: 526  RAA-DGSVTTQFTMTTLEQLGLLKMDFLGLRTLTVIQNAVLMARKKDPSVNMDTLDYDDK 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +    + T  T GIFQLES+GM+  ++ ++P+ +ED+IA +SLYRPGP+D I  Y   KN
Sbjct: 585  KVLEYIGTGKTDGIFQLESAGMKSFMKELKPNSLEDMIAGISLYRPGPMDFIPQYIKGKN 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                I    P ++P+L  T G I+YQEQVMQI + L+GYSL  +D+LRRAM KK  EEM 
Sbjct: 645  DASSISYDCPQLEPILNSTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMSKKKGEEMK 704

Query: 727  KQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            ++++ F        I G  KNGI + +A  I++ +  FA+Y FNKSHAAAYAV++YQTAW
Sbjct: 705  RERQIFLYGDEASGIPGCVKNGIDEQVANKIYDEMLDFANYAFNKSHAAAYAVVAYQTAW 764

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPVE++AA MT  +DN  K+ ++   +RQ  IQI+PP +N    DF V +  I Y 
Sbjct: 765  LKYYYPVEYMAALMTSVIDNPSKVAEYIYASRQMGIQILPPDINNGEADFSVDEGNIRYG 824

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK-KLNRRVLESLVFAGALDCFGY 896
            L+AIK VG    R ++E      P+ +LEDF +RV SK  LN+R +E+L+ AGALD  G 
Sbjct: 825  LSAIKSVGRPVVRAMLEERRTFGPYKNLEDFITRVSSKEGLNKRTIENLIKAGALDTLGG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I  +    +K   +   ++F    E+     +I +      +   +   
Sbjct: 885  TRKQFMSIYIQIMDHVNQEKKYSMSGQMSLFDLVGEEEKADFQIRMPDVGEYSKENKLAF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+ ++   R+M      +              G    +  M+V K  
Sbjct: 945  EKEVLGVYISGHPLEEHEERWRRMISATTADFQFDEELNRTKVHDGEKSVVGGMIVDKTV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + ++T  +     E   FP
Sbjct: 1005 KYTKTNQVMAFLTLEDLLGTVEVVIFP 1031


>gi|153813022|ref|ZP_01965690.1| hypothetical protein RUMOBE_03430 [Ruminococcus obeum ATCC 29174]
 gi|149830824|gb|EDM85914.1| hypothetical protein RUMOBE_03430 [Ruminococcus obeum ATCC 29174]
          Length = 1155

 Score = 1082 bits (2799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1047 (35%), Positives = 581/1047 (55%), Gaps = 41/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +   +D++      + AITD   ++  ++F + A AAGI P
Sbjct: 2    NFTHLHVHTEYSLLDGSNKIKEYVDRVKELGMDSAAITDHGVMYGVIDFYRAARAAGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +          +  +       +VLL    +GY  L+++VS+ ++        
Sbjct: 62   ILGCEVYVAPGSRFDR--EAGSGEDRYYHLVLLAENNQGYSNLMKIVSKGFVEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+ L  L++   EG+I L+   +G + R       + A+   L ++ +F     ++ LQ 
Sbjct: 119  RVDLQLLEKYH-EGIIALSACLAGEVARFLTRGMYEDAKAAALRYQDIFGKGNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     Q++++     + LVATN+  +   ED + HDVL+ +     ++ +DR R
Sbjct: 178  HGIPEQQNVNQQLLKMHRETGIDLVATNDVHYTLAEDAQPHDVLLCLQTGKKLADQDRMR 237

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM  +F    EALENT +IA+RC   ++     LP+F   +       
Sbjct: 238  YEGGQYYVKSPEEMERLFPYATEALENTHKIAQRCHVEIEFGVTKLPKFGVPDG----YT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GLE R            ++ ++RL++EL  I  M +  YFLIV DFI++
Sbjct: 294  SWEYLNELCFKGLEERYQP-------VTEELKERLNYELTTIKNMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ ++I VGPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  ARDHDIMVGPGRGSAAGSLVAYTLGITQLDPIRYDLLFERFLNPERVSMPDIDVDFCFER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV+ KYG + V QI+TFG+L A+  +RDVGR + +PY+QVD + K+IP +    
Sbjct: 407  RQEVIDYVRRKYGDDCVVQIVTFGTLAARGVIRDVGRVMDLPYAQVDTIAKMIPQELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +  F++    D  +  L++ +++LEGL RH S HAAG+VI  + +S+ VP+ 
Sbjct: 467  ID-KALQMNPEFKKVYEEDKEIHELIDTAKRLEGLPRHTSMHAAGVVISQKDVSEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            R       VTQF M  +E+ GL+K DFLGL+TLT++Q ++  + Q   VK+D+  I ++D
Sbjct: 526  RAS-DGSIVTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVHLVEQDTGVKLDMQHIDYND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +    L T  + G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   K
Sbjct: 585  KKVLDSLGTGHSDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPQYIRGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  + I    P ++P+LK T G I+YQEQVMQI + L+GY+L  +D++RRAM KK    M
Sbjct: 645  NRPDTIKYDCPQLEPILKPTYGCIVYQEQVMQIVRNLAGYTLGRSDLVRRAMSKKKAAVM 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K+++ F+         G   NGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 705  EKERQNFVYGNEAEGVPGCIANGIPEQTANKIYDDMIDFAKYAFNKSHAAAYAVVSYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YPVEF+AA MT  ++   K+ ++ Q  R+ NI+I+PP VN     F V +  I Y
Sbjct: 765  FLKYYYPVEFMAALMTSVIEMPIKVAEYIQVCRKMNIKILPPDVNRGAYGFSVDNGAIRY 824

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+AIK VG      ++E   A+  + SL+DF  R+     N+R +E+ + AGALDC   
Sbjct: 825  GLSAIKSVGRPVINALVEEREANGEYRSLKDFIERLTGTV-NKRAIENFIKAGALDCLEG 883

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I       +KN      ++F    E+     +I +      +  +    
Sbjct: 884  NRRQKMVVYSQIVDSIAQEKKNSFAGQMSLFDLVGEEDKKDYEIRMPDVEEYDKDMILGF 943

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--------RGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+ Y+ I+ KM      +              G  + +  M+  K  
Sbjct: 944  EKDVLGIYLSGHPLEKYRNIMEKMISARTIDFQPDEESGIPKVYDGQKVIIGGMITEKTI 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K TR    + ++T  +     E   FP
Sbjct: 1004 KYTRNNKVMAFLTLEDLMGTVEIVVFP 1030


>gi|154499865|ref|ZP_02037903.1| hypothetical protein BACCAP_03522 [Bacteroides capillosus ATCC 29799]
 gi|150271463|gb|EDM98720.1| hypothetical protein BACCAP_03522 [Bacteroides capillosus ATCC 29799]
          Length = 1161

 Score = 1082 bits (2799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1048 (35%), Positives = 589/1048 (56%), Gaps = 42/1048 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ +SLL+GA  +  +  ++    Q A+AITD   ++ A++F +   A G++P
Sbjct: 2    SFVHLHVHTEFSLLDGACRIPALAARVRELGQSAVAITDHGVMYGAVDFYRACKAEGVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +    MT++          +VLL     GY+ L  LVSR +L D      
Sbjct: 62   IIGCEVYVAPRG---MTDRVHELDAEARHLVLLCKNETGYRNLCYLVSRAFL-DGFYIKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +  TEGLI ++   +G + R     + + A++  L  K+ FG+  Y+ +Q H
Sbjct: 118  RIDKELLWQ-HTEGLIAMSACLAGEVPRLILGGNYEGAKRAALEMKEHFGEDYYLEIQDH 176

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                D      ++++     +PLVATN++ +   ED    D LM +     V    R + 
Sbjct: 177  SLPEDAEVVRGIIRIHEETGIPLVATNDAHYTRREDAAMQDTLMCIQMGRTVDDPGRMKF 236

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + Y+K+  EM  +F D PEA+ENTV +A +C+   +     LP F   E      + 
Sbjct: 237  ETEEFYIKSEEEMAQLFPDWPEAIENTVRVAEKCNLEFEFGKYHLPEFKLPEGWT---DP 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +    +    G   R  +G       +Q  +++L++E+ VI +M F  YFLIV+DFI +A
Sbjct: 294  DAYFEHLCWEGFARRYPEG-------SQKNKEQLEYEMGVIRQMGFVDYFLIVSDFIGYA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K +NIPVGPGRGS AGS+ +Y + ITD+DP+++ L FERFLNP+R++MPD DIDFC  RR
Sbjct: 347  KSHNIPVGPGRGSAAGSMVSYCMNITDVDPVKYDLFFERFLNPERVTMPDIDIDFCIRRR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA--H 485
             EVI YVQ KYG + VAQI+TFG++ A+ A+RDVGRAL +PY+ VD + K +P+ P   H
Sbjct: 407  QEVIEYVQQKYGEDHVAQIVTFGTMAARGAIRDVGRALNIPYADVDAVAKQVPSGPGALH 466

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                +++    + R++   D  +  L++ ++ +EG+ RHASTHAAG+VI  RP+ + VP+
Sbjct: 467  ITLDESLKLSKQLRDSYEGDERIHNLIDTAKAIEGMPRHASTHAAGVVITKRPVYEYVPL 526

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
             +    +  VTQ+ M  +E+ GL+K DFLGL+ LT+L  ++  + +R    D+  IP  D
Sbjct: 527  AK--NDESVVTQYVMTTLEELGLLKMDFLGLRNLTVLDDAVQLVRRRIPDFDIHSIPDHD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
               + +L+   T G+FQ+ES+GM     G++P  IEDI A+++LYRPGP+++I  +   K
Sbjct: 585  PAVFKMLSDGKTSGVFQMESAGMTGVCVGLKPQNIEDITAIIALYRPGPMESIPRFIACK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
               +K+   HP+++P+LK T G I+YQEQV++I Q L GYSL +AD++RRA+ KK K ++
Sbjct: 645  QNPDKVKYKHPMLEPILKVTYGCIVYQEQVIRIFQELGGYSLGQADMVRRAISKKKKAQI 704

Query: 726  DKQKERFISGASKNGISKTIA--------VNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K+++ FI G S+ GI   IA         +I++ +  FA+Y FNK+HA +YA+++YQTA
Sbjct: 705  EKERQTFIYGDSERGIEGCIARGVPEQTGKDIYDEIYDFANYAFNKAHAVSYAIVAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            + K HY  E++AA +T  +D+ EK+ ++  + ++  I ++PP +N     F V    I +
Sbjct: 765  YFKCHYTREYMAALLTSVLDSSEKVAEYIAECKECGISLLPPDINESGASFTVTGENIRF 824

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAA+KGVG    + ++ E      F SL DFCSR+    LN+RVLE+L+  GA D  G 
Sbjct: 825  GLAAVKGVGWGFIQSVLDERERGGAFQSLSDFCSRMMDADLNKRVLENLIKCGAFDSTGA 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFEN 954
             R QLL+    +        +       ++F    ++   + ++ L      +       
Sbjct: 885  RRSQLLKVFPQVVDSIAQTRRKNLEGQFDLFGGGGDQPQAAPEMELPDIPEFSRRELMTM 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI----------RGNNIRLAAMVVSK 1004
            E+   G Y +GHP+D Y+   R+         ++             G  + +A ++ S 
Sbjct: 945  EKETTGLYLTGHPMDEYRETARRYHAAPIGAILSDFAKEEGNTDFQDGQKVNIAGVISSA 1004

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + K TR  S + +VT  +     E   F
Sbjct: 1005 KTKTTRNNSLMAYVTLEDDTGSMELLVF 1032


>gi|84683471|ref|ZP_01011374.1| DNA polymerase III, alpha subunit [Maritimibacter alkaliphilus
            HTCC2654]
 gi|84668214|gb|EAQ14681.1| DNA polymerase III, alpha subunit [Rhodobacterales bacterium
            HTCC2654]
          Length = 1171

 Score = 1082 bits (2798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 506/1062 (47%), Positives = 693/1062 (65%), Gaps = 52/1062 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+VH+ YSLLEGA+ +  +     +   PA+A+TDTNN+F ALEFS  A  
Sbjct: 1    MAATPRFIHLRVHTEYSLLEGAVPVKKLAGLCESMDMPAVAVTDTNNMFCALEFSVTASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+ +           G+ P P  P +VLL     GY+ L++L S +YL   
Sbjct: 61   AGVQPIIGCQVTVA----FDTPEPGEQPRPGAP-VVLLAQNEGGYENLMKLNSCLYLDKH 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     + L+ L++  + GLI LTGG+ GP+       +   A++ +  F ++F DRLYV
Sbjct: 116  G-ALPEVTLAELEQY-SAGLICLTGGAEGPVGHWLQQGNRAKAQELMTWFHRVFADRLYV 173

Query: 185  NLQRHRG-------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             LQRH G        ++  E   V++AY   +PLVATN+  F   + YEAHD L+ +A  
Sbjct: 174  ELQRHPGEGGQLTEPEQKTERGFVEMAYAMGIPLVATNDVYFPKTQLYEAHDALICIAEG 233

Query: 238  TVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V Q++ R  +TP HY K+  EM ++F+DLPEA+ENTVEIARRC+F+     PILP+F 
Sbjct: 234  AYVDQQEPRRHLTPQHYFKSPQEMATLFADLPEAIENTVEIARRCAFMAYRRDPILPKFA 293

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            + E D        ELR +A  GLE RLA   I      ++Y  RL+FEL +I  M F GY
Sbjct: 294  DDEVD--------ELRRQAKEGLEARLA--VIPHAAPVEEYEARLEFELGIIEGMGFPGY 343

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI+W+K N IP+GPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMP
Sbjct: 344  FLIVADFIKWSKDNGIPIGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMP 403

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC DRR+E IRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL 
Sbjct: 404  DFDIDFCMDRREETIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463

Query: 477  KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            KLIP +   PVS+ QA+ D+ R RE   A+  V+RLL  ++++EGL R+ASTHAAG+VIG
Sbjct: 464  KLIPVEGVKPVSITQALKDEPRLREEARAEEVVERLLRYAEQVEGLLRNASTHAAGVVIG 523

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            DRPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D +  +G  
Sbjct: 524  DRPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAIDLIHGQGRD 583

Query: 596  ------------------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
                                ++LIP DD +TY L  +  T+ +FQ+ES+GM  AL  M+P
Sbjct: 584  LHIGPDGAEIYTPAEGGENQINLIPLDDEKTYRLYASAKTVAVFQVESTGMMDALRRMKP 643

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             CIEDI+ALV+LYRPGP++NI  Y   KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQ
Sbjct: 644  TCIEDIVALVALYRPGPMENIPTYCEVKNGQREIESVHPLIDHILEETQGIIVYQEQVMQ 703

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ ++GYSL  AD+LRRAMGKKIKE MD ++ +F  GA++ G+ K  A  +F+LL KFA
Sbjct: 704  IAQEMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAEKGVDKKKASEVFDLLEKFA 763

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQI 816
            +YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R+  +I+I
Sbjct: 764  NYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLGVYAEEVRRGLDIEI 823

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA----DKPFDSLEDFCSRV 872
            +PP VN     F V + R+ Y + A+K VG    + I+EA      +KPF +L D   RV
Sbjct: 824  VPPCVNRSEAMFCVSEGRVVYGIGALKNVGVEAMKLIVEARKVEGREKPFVNLYDVARRV 883

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D K++ +R +E L  AGA D    +R ++ +SLD +  Y+  + + R +   ++F  E G
Sbjct: 884  DLKRVGKRPMEMLARAGAFDELDANRRRVFESLDALVSYSAAIHEQRDSAQVSLFG-EAG 942

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                +  L        + R   E + +GFY SGHPLD Y   L++ G+   EE    +  
Sbjct: 943  DDLPEPRLSNAPDWLPNERLAEEHKAIGFYLSGHPLDDYMAALKRKGVVTLEELTKKVER 1002

Query: 993  NN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 ++A  V +KQ++K+ KG+R  +V  ++P    E   F
Sbjct: 1003 APCVAKIAGAVSAKQERKSAKGNRFAFVAMTDPTGACEITVF 1044


>gi|309973764|gb|ADO96965.1| DNA polymerase III alpha subunit [Haemophilus influenzae R2846]
          Length = 1159

 Score = 1082 bits (2798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1048 (38%), Positives = 603/1048 (57%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PII             +  +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPII----------GTDVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGY 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 111  N-DLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFYL 168

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    +  R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP   T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +   
Sbjct: 229  KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL-- 286

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +      Y +RL  EL+VI +M F GYFLI
Sbjct: 287  ---STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT E+DN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +     Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  E+L
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFENL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  + +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEEVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A ++V+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAITKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|16272681|ref|NP_438899.1| DNA polymerase III subunit alpha [Haemophilus influenzae Rd KW20]
 gi|260579831|ref|ZP_05847661.1| DNA-directed DNA polymerase subunit III alpha [Haemophilus influenzae
            RdAW]
 gi|1169392|sp|P43743|DPO3A_HAEIN RecName: Full=DNA polymerase III subunit alpha
 gi|1573746|gb|AAC22399.1| DNA polymerase III, alpha subunit (dnaE) [Haemophilus influenzae Rd
            KW20]
 gi|260093115|gb|EEW77048.1| DNA-directed DNA polymerase subunit III alpha [Haemophilus influenzae
            RdAW]
          Length = 1159

 Score = 1082 bits (2798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1048 (38%), Positives = 602/1048 (57%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFIHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG            +  +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGA----------DVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGY 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 111  N-DLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    +  R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNTEDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP   T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +   
Sbjct: 229  KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL-- 286

Query: 303  IQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLI
Sbjct: 287  ---STEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFETEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +     Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A +VV+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAMTKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|225018880|ref|ZP_03708072.1| hypothetical protein CLOSTMETH_02830 [Clostridium methylpentosum DSM
            5476]
 gi|224948350|gb|EEG29559.1| hypothetical protein CLOSTMETH_02830 [Clostridium methylpentosum DSM
            5476]
          Length = 1155

 Score = 1082 bits (2798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1037 (36%), Positives = 582/1037 (56%), Gaps = 28/1037 (2%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            EK   FVHL +H+ +SLL+GA  +  +        Q A+AITD  N+F  ++F     A 
Sbjct: 21   EKKMGFVHLHLHTEFSLLDGACRIKELAAYAKKLGQDALAITDHGNMFGTIDFYSACKAE 80

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIGC++ +  +      ++  T   +   +VLL     GY+ LI+LVS  Y+    
Sbjct: 81   GIKPIIGCEVYVAPRTRFDKVHRIDT---SPNHLVLLCKNETGYRNLIKLVSAGYIEG-F 136

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYV 184
                RI  + LQE  +EGLI L+   +G I RA        A++    ++  +  D  ++
Sbjct: 137  YSRPRIDHNLLQE-HSEGLIALSACLAGEIPRALTAGDYGRAKQIAEFYRDTMGPDNYFI 195

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ H   ++     Q+V+LA    + LVATN+  ++  ED +   VL+ +     + ++
Sbjct: 196  ELQDHGIKEQRAILPQLVKLAQQVGVGLVATNDVHYIRREDSKTQKVLLCIQTGKTLDEE 255

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                  T + YLK+  EM S+F     A+ENT  IA RC+   +     LP F     +D
Sbjct: 256  LAIEFPTQEFYLKSEEEMQSLFGSFEGAIENTARIAERCNLEFEFGVTKLPHFEPPNGED 315

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             +             GL+    +    K         R  +E++VI  M F  Y+LIV D
Sbjct: 316  NK----EFFLRLCHDGLKKYYGEQPDPK------ILDRFHYEIDVIDSMGFVDYYLIVYD 365

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            F+++AK++ IPVGPGRGSGAGS+ AY + IT IDP++++LLFERFLNP+R+SMPDFDIDF
Sbjct: 366  FVRYAKEHGIPVGPGRGSGAGSIIAYCIGITGIDPIKYNLLFERFLNPERVSMPDFDIDF 425

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EV+ YV  KYG + VAQI+TFG+L A+ A+RDVGR + MPY  VD++ K +P  
Sbjct: 426  CYERRPEVLDYVIRKYGADHVAQIVTFGTLAARGAIRDVGRVMGMPYDVVDKIAKQVPIH 485

Query: 483  PAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   +++  A+      +    +DP V  L++ ++KLEG+ R+ STHAAG+VI D+P++ 
Sbjct: 486  PGITITIDSALKKSPELKAMADSDPQVRELIDTARKLEGMPRNTSTHAAGVVITDKPVTD 545

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
             VP+ +    +  VTQ+ M  I   GL+K DFLGL+ LT++  +   + +   +  ++ I
Sbjct: 546  YVPLSK--NDESIVTQYTMNTIADLGLLKMDFLGLRNLTVISDAERGVRRFEPEFAINKI 603

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD ET+ +L+   + G+FQ ES+GMR+ L  M+PDC+ED+IA++SLYRPGP   I  +
Sbjct: 604  PLDDKETFDMLSQGQSDGVFQFESAGMRKMLSRMKPDCLEDLIAVLSLYRPGPAQFIDAF 663

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               +   E+I      +  +L  T GVI+YQEQVMQI + L+GYS   ADV+RRA+ KK 
Sbjct: 664  IENRIHPERITYRDERLRHILDVTYGVIVYQEQVMQIFRELAGYSYGRADVVRRAISKKK 723

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               M++++ +FI GA  NG+S+  A  IF  ++ FA Y FNKSHAAAY+++SYQTA++K 
Sbjct: 724  AGVMEQERIKFIEGAVANGLSERDAEAIFNDMSSFASYAFNKSHAAAYSLVSYQTAYLKC 783

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP E++AA +   + + +K+  +  + R+ +IQ++PP +N   + F V D  I + L A
Sbjct: 784  HYPREYMAALLNSVIYSTDKVISYIGECRKQHIQVLPPDINRSQIGFTVSDGSIRFGLLA 843

Query: 842  IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +K VG      I+E   A+  F+SL +F  R+ +++LN+  + + +  GA D F  +R Q
Sbjct: 844  VKKVGKGVIERIVEEREANGAFESLYNFVERMHNRELNKAAILAFIQCGAFDSFEENRRQ 903

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            + +S + I +     +++  N   N+F    GT  +K +  +     +      E++  G
Sbjct: 904  MAESYERIVESVNSSKRSNINGQINLFETVTGT--EKFSYPELEEYTTDELMAMERQTTG 961

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATI----RGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             Y S HPLD +   L+   I    E          G +  L A+V S ++ +T+ G+ + 
Sbjct: 962  LYISSHPLDRFDKQLKGRRIDQISEIQQEESSYCDGAHAELGAIVASVKRIQTKGGALMA 1021

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +    +     EA  FP
Sbjct: 1022 FAELEDRTGSIEAVVFP 1038


>gi|325278077|ref|ZP_08143596.1| DNA polymerase III subunit alpha [Pseudomonas sp. TJI-51]
 gi|324096784|gb|EGB95111.1| DNA polymerase III subunit alpha [Pseudomonas sp. TJI-51]
          Length = 1174

 Score = 1081 bits (2797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1063 (39%), Positives = 601/1063 (56%), Gaps = 56/1063 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL+VHS +SL++G + +  +   +A    PA+AITD +N+ S ++F + A  AGI
Sbjct: 2    SVPFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G  L +           G  P   +  I LL    +GY+ L EL+SR +   Q   
Sbjct: 62   KPICGADLWLA----------GADPEAPLSRICLLAMNPKGYRNLTELISRGWTDGQRNG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             V +   W+    +EGLI L+ G  G I  A        A+  L  +  +F +R YV +Q
Sbjct: 112  LVILQREWIA-PASEGLIALSAGKEGDIGMALLAGRDDEAQALLQDWMGMFPERFYVEVQ 170

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R +R  D       V LA     PLVATN+  F+ + D++AH+  + +     +    RP
Sbjct: 171  RTNRARDEEYVHAAVALADRLGAPLVATNDVRFIKQSDFDAHETRVCIGEGWTLDDPRRP 230

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               +   YLK+  EM  +FSDLP+A+ NTVEIA+RC+  +Q+    LP F       I  
Sbjct: 231  RCYSDQQYLKSSEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI-- 288

Query: 306  EEENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              ++ LR+ +  GLE RLA     +         Q Y  RL FEL++I +M F GYFLIV
Sbjct: 289  --DDYLRHVSHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIV 346

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+
Sbjct: 347  MDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDV 406

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI YV   YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP
Sbjct: 407  DFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP 466

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +    +  +A   +   R+    D     + +++ KLEG+ R    HA G+VI    L+
Sbjct: 467  FEVGMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLT 525

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVK 595
               P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ +      +    
Sbjct: 526  DFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            V++  IP DD +TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+
Sbjct: 586  VNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPL 645

Query: 656  DNIVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 646  QSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKF 825

Query: 829  KVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V  D RI Y L AIKGVG      I+EA A   PF  L DFC R+D K++N+R L++LV
Sbjct: 826  TVNDDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALV 885

Query: 887  FAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-- 929
             +GALD  G                +R  LL +L    K A+       + H ++F    
Sbjct: 886  RSGALDRLGPHFHDEIKAYHAHIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGGMF 945

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
            +           K        R + E+  LG Y +GHP+D Y+  +R+   +   +   +
Sbjct: 946  DAADVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIIDLKPS 1005

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   +A M+++ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1006 RETQ--TIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046


>gi|313500226|gb|ADR61592.1| DnaE [Pseudomonas putida BIRD-1]
          Length = 1174

 Score = 1081 bits (2797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1063 (39%), Positives = 599/1063 (56%), Gaps = 56/1063 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL+VHS +SL++G + +  +   +     PA+AITD +N+ S ++F + A  AGI
Sbjct: 2    SVPFVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G  L +           G  P   +  I  L    +GY+ L EL+SR +   Q   
Sbjct: 62   KPICGADLWLA----------GADPDAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             V +   W+    +EGLI L+ G  G I  A        AE  L  +  +F +R YV +Q
Sbjct: 112  LVILQREWIA-PASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQ 170

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R +R  D       V LA     PLVATN+  F+ + D++AH+  + +     +    RP
Sbjct: 171  RTNRARDEEYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRP 230

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               +   YLK+  EM  +FSDLP+A+ NTVEIA+RC+  +Q+    LP F       I  
Sbjct: 231  RCYSDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI-- 288

Query: 306  EEENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              ++ LR+ A  GLE RLA     +         Q Y  RL FEL++I +M F GYFLIV
Sbjct: 289  --DDYLRHVAHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIV 346

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+
Sbjct: 347  MDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDV 406

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI YV   YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP
Sbjct: 407  DFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP 466

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +    +  +A   +   R+    D     + +++ KLEG+ R    HA G+VI    L+
Sbjct: 467  FEVGMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLT 525

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVK 595
               P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ +      +    
Sbjct: 526  DFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +++  IP DD +TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+
Sbjct: 586  LNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPL 645

Query: 656  DNIVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 646  QSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKF 825

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V +  RI Y L AIKGVG      I+EA A   PF  L DFC R+D K++N+R L++LV
Sbjct: 826  TVNNDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALV 885

Query: 887  FAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--H 929
             +GALD  G                +R  LL +L    K A+       + H ++F    
Sbjct: 886  RSGALDRLGPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMF 945

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
            +           K        R + E+  LG Y +GHP+D Y+  +R+   +   +   +
Sbjct: 946  DAADIDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPS 1005

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   +A M+++ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1006 RETQ--TIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046


>gi|312897946|ref|ZP_07757359.1| DNA polymerase III, alpha subunit [Megasphaera micronuciformis F0359]
 gi|310620980|gb|EFQ04527.1| DNA polymerase III, alpha subunit [Megasphaera micronuciformis F0359]
          Length = 1158

 Score = 1081 bits (2797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1034 (37%), Positives = 583/1034 (56%), Gaps = 29/1034 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YSL +G   +  ++ +      PA+A+TD  N++  +   + A   GI+P
Sbjct: 3    PFVHLHNHTQYSLFDGLTRIPEMVKRAKDLGMPAVAVTDHGNMYGLIHLYKAAKKEGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128
            I+GC++ +      +  ++ +     +  ++LL     GYQ L+++VS+ ++  +     
Sbjct: 63   ILGCEIYMTRGSRFEQKSKER-----LCHLILLAKDFHGYQNLVKIVSKAFVDGENSYHR 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
             R     L++   EGLI L+    G + +     +   A + L  F  LF  D  Y+ +Q
Sbjct: 118  PRADFDLLEQYH-EGLIALSACIEGQVQQDILNGNEMQARQTLERFISLFGKDDFYLEIQ 176

Query: 188  RHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   +     +V +  A  + L LVATN+  +L ++D  A +V + ++  + +   +  
Sbjct: 177  NHGLAEEREVRRVFKDWAEEYGLKLVATNDFHYLDKDDAPAQEVKLCISTGSTLDDPNHF 236

Query: 247  RVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R +  + Y+K+R EM  +F DLPEAL+ T+EIA +C+  +      LP+F   + +    
Sbjct: 237  RFSNNEFYMKSREEMEKLFPDLPEALDTTLEIADKCNVEISFDERHLPQFPVPDGE---- 292

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             +E+ LR      L  R               R+RLD+EL VI  M F  YFLIV D+++
Sbjct: 293  TDESYLRKLCEEALPTRY-------SVITDAVRERLDYELGVINAMGFPSYFLIVWDYVK 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+ + IPVGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R++MPD D+DFC +
Sbjct: 346  YARDHKIPVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERITMPDIDMDFCYE 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             R  +I YV  KYG + VAQIITFG+L A+A LRDVGR L MP S+V+R+ K +PN+   
Sbjct: 406  NRSRIIDYVTRKYGKDHVAQIITFGTLAARAVLRDVGRVLDMPLSEVNRIMKTVPNELGI 465

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+     FR+       V RL++  ++LEGL RH+STHAAG+VI   P+   VPM
Sbjct: 466  TLD-KALQTSKEFRKDYETKAEVRRLVDFGKRLEGLVRHSSTHAAGVVISAAPVDDYVPM 524

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                +     TQ++   +E+ GL+K DFLGL+TLT++  ++  + +   + +D+  I  D
Sbjct: 525  QY-SKEGYLTTQYDKDLVEELGLLKMDFLGLRTLTVIGDAVAMINRNYGIDLDIDKISLD 583

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
            D  T  LLT   T G+FQ+ES G+   ++ + P   E +I LV+LYRPGP+ + +V  + 
Sbjct: 584  DEATCRLLTEGDTAGVFQMESQGITNLVKELAPKHFEHMIPLVALYRPGPLGSGMVEDFI 643

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
               +G++K+  +HPL++P+LK+T GVI+YQEQVMQIA  + G+SL EAD+LRRAMGKK +
Sbjct: 644  KGSHGEKKVTYLHPLLEPILKDTYGVILYQEQVMQIASAMGGFSLGEADLLRRAMGKKKE 703

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +  Q+  F+ G  KN I   IA  +F+L+  FA YGFNKSH+AAYA +++QTA++K H
Sbjct: 704  GVLKAQRAHFLEGTRKNHIDDDIANKVFDLMVYFAGYGFNKSHSAAYAYVAWQTAYLKAH 763

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            Y  EF+AA+MT  + +V KI  +  + ++ ++ ++ P VN     F V    I + LA I
Sbjct: 764  YCAEFMAATMTSMISDVAKISYYAAECKRHHVPVLSPDVNESESVFSVQGGNIRFGLAGI 823

Query: 843  KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K VG    R I+EA   D PF S EDFCSRVDS+ +NRR LESL+  GA+D FG  R QL
Sbjct: 824  KSVGENAIRTILEARKKDGPFTSFEDFCSRVDSRIVNRRGLESLIQCGAMDSFGKKRSQL 883

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            +  LD          K+  +    +F       S  +          S+R   E+   GF
Sbjct: 884  MAVLDQAMSMGALRRKDNESGQMGLFDDVVSDVSTDLVYPDMEEYPLSMRLAMEKEYDGF 943

Query: 962  YFSGHPLDVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            YFSGHPLD Y  ++ K+      Y+E      G  I +  ++ + ++  T++   +  +T
Sbjct: 944  YFSGHPLDAYTEVMNKLTPLAVLYDEEARGYDGKMITVGGLITAVRRVTTKRNDAMAIIT 1003

Query: 1020 FSEPAKEYEANFFP 1033
              +         FP
Sbjct: 1004 VEDFTHTVTVVVFP 1017


>gi|89070902|ref|ZP_01158137.1| DNA polymerase III subunit alpha [Oceanicola granulosus HTCC2516]
 gi|89043541|gb|EAR49752.1| DNA polymerase III subunit alpha [Oceanicola granulosus HTCC2516]
          Length = 1166

 Score = 1081 bits (2797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 499/1057 (47%), Positives = 688/1057 (65%), Gaps = 47/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  F+HL+VH+ YSLLEGA+ + ++    A  + PA+A+TDTNN+F ALEFS+ A  
Sbjct: 1    MTSASRFIHLRVHTEYSLLEGAVPVKSLPGLAAGAEMPAVAVTDTNNMFCALEFSEYAAK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQLD+       +T +          +VLL  +  GY  L++L S  YL  +
Sbjct: 61   AGVQPILGCQLDVTY-----VTPEPGAKPEAPAPVVLLAQSEAGYMNLMKLNSCAYLEGR 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              +  ++ L  L     EGLI LTGG  GP+ R         A+  +   K ++GDRLY+
Sbjct: 116  A-EWPQVTLQELA-AHGEGLICLTGGPDGPVGRLLRAGQRARAQALVERLKAIYGDRLYM 173

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       +R  E   V++AY  ++PLVATN+  F   + YEAHD L+ +A   
Sbjct: 174  ELQRHPGEAGAPEAERLSERGHVEMAYALDIPLVATNDVYFPKTDLYEAHDALICIAEGA 233

Query: 239  VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q   R R+TP +Y K++ EM ++F+DLPEALENTVEIARRC++  +  APILPRF +
Sbjct: 234  YVDQQAPRRRLTPQNYFKSQQEMATLFADLPEALENTVEIARRCAYKAEKRAPILPRFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E +        ELR +A  GL  RLA   I      ++Y++RLDFEL++I  M F GYF
Sbjct: 294  DEVE--------ELRRQANEGLAARLA--VIPHAAPVEEYQKRLDFELDIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR++LLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYALLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQ+PY QVD+L K
Sbjct: 404  FDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQLPYMQVDKLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+ +A+AD+ R REA   +  V RLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALADEPRLREAAKNEEVVGRLLSYGQQIEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
            RPL +LVP+Y+D RS++P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G   
Sbjct: 524  RPLDELVPLYQDPRSEMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLILKSGRNL 583

Query: 596  -----------------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               ++LIP DD  TY L +   T+ +FQ+ESSGM  AL  M+P 
Sbjct: 584  HEAADGSRLYEPAPGAENQMNLIPLDDERTYELYSKARTVAVFQVESSGMMDALRRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG      +HP +D +L ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPKYCEVKNGISDRDKLHPSVDHILDETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ ++GYSL  AD+LRRAMGKKI+E MD ++ +FI+GA  NG+    A+ ++ LL KFA+
Sbjct: 704  AQEMAGYSLGGADLLRRAMGKKIQEAMDAERPKFIAGAKANGVDDKKALEVWNLLDKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   +K+  + Q+ ++   +   
Sbjct: 764  YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFQELKKGLGLPWD 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            PP VN     F V + R+ Y+L A+K VG    + I+EA   KPF ++ DF  R D K++
Sbjct: 824  PPCVNRSEATFDVQEGRLLYALGALKNVGVEAMKLIVEARDGKPFSNVYDFARRTDLKRV 883

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE L  AGA D    +R ++ +SLD +  Y+  V + R +   ++F  + G    +
Sbjct: 884  GKRSLEMLARAGAFDELDPNRRRVFESLDALTAYSAAVHEQRQSNQSSLFG-DGGDDLPE 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--I 995
              L        + R   E + +GFY SGHPLD Y   L++  +   +E +A   G    +
Sbjct: 943  PRLPGVPDWLPAERLAEEFKAVGFYLSGHPLDDYLAPLKRKQVLTLDEVMAKAAGGACIV 1002

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++A  V S+Q++K+ +G+R  +V  S+P  +YE   F
Sbjct: 1003 KMAGTVASRQERKSARGNRFAFVQLSDPTGQYEVTMF 1039


>gi|226310964|ref|YP_002770858.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
 gi|226093912|dbj|BAH42354.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
          Length = 1142

 Score = 1081 bits (2797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1029 (37%), Positives = 608/1029 (59%), Gaps = 24/1029 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+GA  ++ ++ + +     A+A+TD  NL+ A+ F +    AGI+P
Sbjct: 3    SFVHLHVHTEYSLLDGAARIDTLVKRASELGMHALAMTDHANLYGAIPFYKACLEAGIRP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +   +            P    +++L     GY+ L+ L +     D      
Sbjct: 63   IIGMELYVIEGNLQDRVRNA----PPPSHLIVLAENETGYRNLLRLATIANT-DGNYILP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L +  T+GLI L+G   G + +      +  A++  L ++++FG+   Y+ L  
Sbjct: 118  RLNKEVLAK-HTDGLIALSGCQQGEVAKLLLAGEADTAKEAALRYQRMFGEQHFYLELAD 176

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +R   +++V+L+    +PL+ATNN  ++  ED++ HD+L+A+     + +++R R
Sbjct: 177  HGLEVERRLNTRLVKLSQETGIPLIATNNVHYIHREDHQQHDILLAIKEGKTIGEENRFR 236

Query: 248  VTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D Y LK+  EM ++F+  P+AL NTV +A RC   L   A ILP F   E  D    
Sbjct: 237  YETDQYYLKSAEEMAALFAFAPQALANTVAVADRCKLDLTFGAHILPEFPLAEGQD---- 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     G   R        G    + + RLD EL +I    F+ YFLIV DF+++
Sbjct: 293  STQYLRELCEKGCLERY-------GEITPEAQARLDHELAIITGTGFTDYFLIVWDFMRY 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N IP GPGRGS AGS+ AY L IT++DPLRF LLFERFLNP+R++MPD DIDF  +R
Sbjct: 346  AHENGIPTGPGRGSAAGSLVAYVLKITNVDPLRFQLLFERFLNPERVTMPDIDIDFSVER 405

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYGH+RVAQIITFG++ A+AA+RDVGRAL +    VDR+ K+IP  P   
Sbjct: 406  RDEVIHYVASKYGHDRVAQIITFGTMAARAAVRDVGRALGLSLGIVDRVAKMIPQSPGMT 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +    +    +    +L+E ++ +EGL RHASTHAAG+VI   PL+  VP+ 
Sbjct: 466  IE-RAMQINPDIGKLCAENKQAAQLIETARGVEGLPRHASTHAAGVVISREPLTNYVPLQ 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                  L +TQ+ M+ +E+ GL+K DFLGL+ LT++Q++L  L ++G+ +DL  +P DD 
Sbjct: 525  TG-NEGLALTQYPMEILEEVGLLKMDFLGLRNLTIIQETLRHLQEQGISLDLDKLPTDDE 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T+ +L+   T GIFQLESSGMR  L  ++P  ++DIIA+++LYRPGP++ I  Y   K+
Sbjct: 584  KTFRMLSRGETTGIFQLESSGMRNVLRDLKPSSLDDIIAVLALYRPGPMEIIPQYIAAKH 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G  K+   HP+++P+L+ET G +IYQEQ+MQI+  L+G+SL EAD+LRRA+GKK +E + 
Sbjct: 644  GTSKVQYAHPVLEPILRETHGFMIYQEQIMQISSTLAGFSLGEADILRRAVGKKKRELLA 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +Q+E+F++G  + G    +   +++L+ +FADYGFNK+H+ AYA+I+YQ A++K  YP+ 
Sbjct: 704  EQREKFVAGCVRQGYGDELGNQVYDLIVRFADYGFNKAHSVAYAIIAYQMAYLKATYPLA 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+AA ++L + +  +I ++ ++AR+  + ++ P VN     F V  + I + LAA+K VG
Sbjct: 764  FMAALLSLSIGSQTRIAEYTEEARRLQLTVLGPDVNKSLAFFTVEQDAIRFGLAAVKNVG 823

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                  I++    +P+  + DFC+RVD++ +NRRV+ESL   GALD     R QLL  LD
Sbjct: 824  YGAIESIVKERKGRPYRDVFDFCARVDARLVNRRVVESLTLCGALDSLPGHRNQLLLLLD 883

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENSSVRFENEQRVLGFYFS 964
                 A      R     N+FA E+      +     +    + + + + E+ ++G Y S
Sbjct: 884  EAVGKANNKRIERDANQLNLFAGEEDAAPLREPAEYPEVPPLSHTQQLKEERDLIGVYIS 943

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            GHPLD +  +  +  +          R   +++  M+   ++ +T+KG  + ++T  +  
Sbjct: 944  GHPLDQFAHVASRPEVTVISSLGDVPRDKTVKVFGMITEARRIQTKKGDPMAFITLEDKT 1003

Query: 1025 KEYEANFFP 1033
               E   FP
Sbjct: 1004 APVELVVFP 1012


>gi|323702832|ref|ZP_08114491.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
            574]
 gi|323532220|gb|EGB22100.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
            574]
          Length = 1189

 Score = 1081 bits (2797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/1036 (38%), Positives = 602/1036 (58%), Gaps = 44/1036 (4%)

Query: 23   LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
            ++GA  +     +       A+A+TD   +F A+EF +     GI+PI+GC++ +  +  
Sbjct: 1    MDGATRIKQAARQARESGMNALALTDHGCMFGAVEFYKTCHQEGIKPILGCEVYVAPRS- 59

Query: 83   LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
              MT++       +  +VLL    EGY+ L++LVS  Y         R+    L     +
Sbjct: 60   --MTDRIPKLDDQLYHLVLLAENQEGYKNLLKLVSLGYTEG-FYYKPRVDKQTLARYH-K 115

Query: 143  GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRHRGYDRY-RESQV 200
            GLI L+G  +G + +      SQ A +    +  +F  +  ++ LQ H   ++     ++
Sbjct: 116  GLIALSGCVAGEVAQRILSGQSQQARQAARDYVDIFGPNNYFLELQDHGFQEQKTVNREL 175

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSE 259
            +++A   +LPLVATN+  +L  E     DVL+ +     V+   R +  + + YLKN  E
Sbjct: 176  LRIAGDMQLPLVATNDVHYLKREHAYIQDVLLCIQTGKSVNTPGRMKFASQEMYLKNPHE 235

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F ++PEAL NTV IA RC   L+     LP F   E         + LR    AG 
Sbjct: 236  MNLVFGEIPEALTNTVRIAERCHVELEFGKLHLPYFTVPEG----YTPASYLRELCEAGA 291

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
              R        G+ +   ++RLD+EL VI +M +  YFLIV DFI++A++  I VGPGRG
Sbjct: 292  VKRY-------GHCSGPVKERLDYELKVIGQMGYDEYFLIVWDFIKFARERGIGVGPGRG 344

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            S AGS+ +Y L IT +DPLR+ LLFERFLNP+R+SMPD D+DF  +RR EVI Y+  KYG
Sbjct: 345  SAAGSIVSYVLGITSLDPLRYGLLFERFLNPERISMPDIDVDFDFERRGEVIEYIVQKYG 404

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             +RVAQIITFG++ A+AA+RDVGRAL M Y +VDR+ KL+P +    +  +A+A     +
Sbjct: 405  TDRVAQIITFGTMAARAAIRDVGRALDMSYGEVDRVAKLVPGELNMTI-AKALASSPELK 463

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
             A   DP V RL++ + +LEG+ RHASTHAAG+VI   PL + +P+++     L  TQF 
Sbjct: 464  AAYDHDPEVKRLVDTAAELEGMPRHASTHAAGVVISRDPLVEYLPLHKAA-DGLVTTQFP 522

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTL 618
            M  +E+ GL+K D LGL+ LT++ ++++ + Q RG  +D++ I  DD  TY++L     +
Sbjct: 523  MGTVEELGLLKMDLLGLRNLTVINEAVNLIKQTRGRALDMNAIALDDQTTYNMLARGEGV 582

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP 676
            G+FQLESSGMR  L+ ++P   EDI+ALV+LYRPGP+ + +V  +  RK+G  K    HP
Sbjct: 583  GVFQLESSGMRNILKELKPSAFEDIVALVALYRPGPLGSGMVEDFIQRKHGLTKPDYFHP 642

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
             ++P+LKET GVI+YQEQVM IA++++GY+L +AD LR+AMGKKI E M   ++ FI G 
Sbjct: 643  DLEPILKETYGVILYQEQVMMIARVMAGYTLGQADALRKAMGKKIPEIMAMHRQWFIHGT 702

Query: 737  ----------------SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                               G    +A  +F+L+  FA YGFNKSH+AAYA++SYQTA++K
Sbjct: 703  TVDEKGKPLKSPIPGAVARGYDVALAEKMFDLMEYFAGYGFNKSHSAAYALVSYQTAYLK 762

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +Y VE++AA +T   DN +K+  + ++ R+  IQ++PP +N    +F V +  I + LA
Sbjct: 763  ANYGVEYMAALLTSVRDNTDKVVIYIEECRRMGIQVLPPDINQSRENFTVVNGAIRFGLA 822

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            A+K VG    + I+ A   D  F S  DFCSR+D++ +NRRVLESL+ AGALD FG  R 
Sbjct: 823  AVKNVGLGAVQEIIRAREKDGDFTSFTDFCSRLDTRVVNRRVLESLIKAGALDQFG-HRA 881

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFENEQR 957
            QLL+ LD+  + A  V+++R     ++F    +K   + +I L          + + E+ 
Sbjct: 882  QLLKGLDDGLELAARVQRDRNQGQVSLFDLMTDKAEEAMEIPLPDVQPLTIREQLQLEKE 941

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             LG Y SGHPL  +  ++  +  +   E +  + G  + + + +V+ ++  +RKG  + +
Sbjct: 942  TLGLYISGHPLAEFNWLMEALEARRIVELLEAMDGQPVLVVSNIVTIKRITSRKGDLMAF 1001

Query: 1018 VTFSEPAKEYEANFFP 1033
             T  +     E   FP
Sbjct: 1002 ATVEDLTGNCEVVIFP 1017


>gi|303248384|ref|ZP_07334644.1| DNA polymerase III, alpha subunit [Desulfovibrio fructosovorans JJ]
 gi|302490182|gb|EFL50100.1| DNA polymerase III, alpha subunit [Desulfovibrio fructosovorans JJ]
          Length = 1160

 Score = 1081 bits (2797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1036 (39%), Positives = 599/1036 (57%), Gaps = 26/1036 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YSLL+GA+ + +++        PA AITD  NL  AL F   A  A ++P
Sbjct: 3    DFVHLHCHTEYSLLDGAIRIGDLVKTAKGFGCPAAAITDHGNLHGALMFYDYAKKADLKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +D  K     ++P      +VLL     GY  L++LVS+ +L        
Sbjct: 63   IIGCEVYVAKEDRRKKD--ARSPRDAGYHLVLLAKDMTGYHNLLKLVSKGHLEG-FHYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L + G EGLI L+    G I++     S   A      +  LF DR Y+ +Q +
Sbjct: 120  RVDKELLGQYG-EGLIALSACLKGEINQKLLRESRDAAVATAREYAALFPDRFYLEIQDN 178

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++    + +++L+   +LPLVATN+  +L  +D EAHD+L+ +  +  V    R R 
Sbjct: 179  GIPEQTTVNNFLIELSDDLKLPLVATNDCHYLHADDAEAHDILLCIQTAACVDDVKRMRF 238

Query: 249  TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            T  D Y ++  EM   F D+P+AL NT EIA R    L       P +         K  
Sbjct: 239  TSNDLYYRSPEEMAEAFKDVPQALANTCEIADRIDVKLDFDGYHFPVYKAPPG----KSL 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++ + + A  GL+ RLA+   A     + Y +RL+ EL VI +M F GYFLIV DFI WA
Sbjct: 295  DDVMSDMAREGLKKRLAKMPEA---DPKQYWERLELELGVITKMGFPGYFLIVQDFINWA 351

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K ++IPVGPGRGS AGS+ AY+L IT++DP+ + L FERFLN +R+SMPD D+DFC+ RR
Sbjct: 352  KDHDIPVGPGRGSAAGSLVAYSLRITNLDPMPYDLFFERFLNIERVSMPDIDVDFCERRR 411

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVIRYV   YG + VAQI TFG+++AK  +RDVGRAL M + + DR+ KLIP D    +
Sbjct: 412  HEVIRYVTEHYGADAVAQITTFGTMKAKGVVRDVGRALGMTFGETDRIAKLIPEDLKMTI 471

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   +     DP +  L++IS++LEGL RHASTHAAG+V+ D+ +++ VP+Y+
Sbjct: 472  D-KALELEPELKTLVRTDPRIAHLIDISRRLEGLARHASTHAAGVVVSDKAMTEYVPLYK 530

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606
               ++  VTQ++MK +EK+GL+KFDFLGLKT+T++  +L  + +      D   +P  D 
Sbjct: 531  GKNNET-VTQWDMKRVEKSGLVKFDFLGLKTITVIDDALKIIREMGEEPPDFETLPMTDP 589

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
             TY L     T GIFQ+ES GMR+ L  ++P+C ED+IA+++LYRPGP+ + +V  +  R
Sbjct: 590  ATYELFARGDTDGIFQVESQGMRKYLRMLKPNCFEDLIAMLALYRPGPLGSGMVELFIRR 649

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G + +   HPL++  L+ T GVI+YQEQVM+IAQ+L+ YSL   D+LRRAMGKK  EE
Sbjct: 650  KHGLDPVEYPHPLLEETLRSTYGVIVYQEQVMKIAQVLANYSLGGGDLLRRAMGKKNAEE 709

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M +Q+  F+ G ++N I    A  IF+L+ KFA+YGFNKSH+AAYA ISYQTA++K HYP
Sbjct: 710  MSRQRGIFVEGCAQNKIDAKKANEIFDLMEKFAEYGFNKSHSAAYAQISYQTAYLKAHYP 769

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            V F+AA MT +M+N +K+ ++    R  +I++ PP VN     F V DN+I Y LAA+K 
Sbjct: 770  VAFMAALMTSDMENQDKLLQYIAACRAGDIELCPPDVNAGLPHFSVKDNKILYGLAAVKN 829

Query: 845  VGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +G      I  E   D PF SL D  SRV+ +K+ +RV+E L+  GA D FG +R  L  
Sbjct: 830  IGRDAVLEIAAEREKDGPFSSLLDLTSRVNMRKVTKRVIEYLIKCGACDGFGCTRAGLFA 889

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL------EKFSVENSSVRFENEQR 957
             LD      Q     ++    ++           + L       +            E+ 
Sbjct: 890  GLDQAAAVGQRRAAEKSEGRLSLMELVPDKPKPTVGLGLSCPEAELPEWLHEEMMAYEKE 949

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             LGFY + HPL  Y+  LR M +    +      G  +++  + V+ ++  T+KG ++ +
Sbjct: 950  ALGFYLTSHPLLAYERDLRSMRVTTLSQCAGLEPGVEVKVPCICVTTKEIITKKGQKMAF 1009

Query: 1018 VTFSE-PAKEYEANFF 1032
                +    E E   F
Sbjct: 1010 CKLEDHLGGEAEVVVF 1025


>gi|310816591|ref|YP_003964555.1| DNA polymerase III subunit alpha [Ketogulonicigenium vulgare Y25]
 gi|308755326|gb|ADO43255.1| DNA polymerase III subunit alpha [Ketogulonicigenium vulgare Y25]
          Length = 1163

 Score = 1081 bits (2797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 508/1054 (48%), Positives = 686/1054 (65%), Gaps = 48/1054 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VH+ YSLLEGA+   ++     A   PA+A+TDTNNLF ALEFS+KA  +GIQ
Sbjct: 4    PKFIHLRVHTEYSLLEGAIHAGDLPKLAKAAGMPAVAVTDTNNLFCALEFSEKASKSGIQ 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGCQ+D+       M  +          IVLL  +  GY  L+ L S  YL D+G   
Sbjct: 64   PIIGCQVDLTY-----MKVEAGKRAEDPAPIVLLAQSEVGYANLMALNSCAYL-DKGGAL 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++  + L     EGLI LTGG  GP+ R         A   L     ++ +RLYV LQR
Sbjct: 118  PQVTTADLA-AHAEGLICLTGGPDGPLGRMIRAGQDNAARLLLERLAAIYPNRLYVELQR 176

Query: 189  HRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            H         +   E   ++ AY   LPLVATN++ F  E  YEAHD L+ +A    V Q
Sbjct: 177  HPIEGGLPDAEAQTERPFIEWAYALNLPLVATNDAYFKDEGFYEAHDALICIAEGAYVDQ 236

Query: 243  KD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            ++ R ++TP HY K+++EM ++F+DLPEALENTVEIA+RC+F      PILPRF + E +
Sbjct: 237  QEPRRKLTPQHYFKSQAEMATLFADLPEALENTVEIAKRCAFKAYKRDPILPRFADDEVE 296

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                    ELR ++ AGL+ RL    I        Y  RL+FE+N+I +M F GYFLIVA
Sbjct: 297  --------ELRRQSKAGLQARL--DVIPHAAELHVYWDRLEFEMNIIEKMGFPGYFLIVA 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK   IPVGPGRGSGAGS+ AYALTITD+DP+R+SLLFERFLNP+R+SMPDFDID
Sbjct: 347  DFIKWAKDEGIPVGPGRGSGAGSLVAYALTITDLDPIRYSLLFERFLNPERVSMPDFDID 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRR+EVI+YVQ KYG +RVAQIITFG+L +KAA+RDVGR LQMPY QVDRL K+IP 
Sbjct: 407  FCMDRREEVIQYVQGKYGRDRVAQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKMIPV 466

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   PVS+ QA+ D+ R RE    +P V RLL+ +Q++EGL R+ASTHAAG+VIGDRPL 
Sbjct: 467  EGVKPVSIAQALKDEPRLREEADREPVVARLLDYAQQVEGLLRNASTHAAGVVIGDRPLD 526

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
             LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++  + + G       
Sbjct: 527  HLVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVSLIRKSGRHLHEAA 586

Query: 596  -------------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
                          D+  IP DD ++Y L +   T+ +FQ+ES+GM  AL+ M+P CIED
Sbjct: 587  DGTVLYTPPKGAEDDIGAIPLDDAKSYQLYSDAKTVAVFQVESTGMMDALKRMKPTCIED 646

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            I+ALV+LYRPGP++NI  Y   KNG+ +I SIHP ID +L ETQG+I+YQEQVMQIAQ++
Sbjct: 647  IVALVALYRPGPMENIPTYCEVKNGQREITSIHPTIDFILAETQGIIVYQEQVMQIAQVM 706

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGF 761
            +GYSL  AD+LRRAMGKKI EEM K++ +F +GA + + I +  A  +F+LL KFA+YGF
Sbjct: 707  AGYSLGGADLLRRAMGKKIAEEMAKERPKFTTGAKETHNIDEKKAGEVFDLLEKFANYGF 766

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPS 820
            NKSHAAAYAV+SYQTAW+K ++ VEF+A  M  ++   +K+  + Q+ R+   +  +PP 
Sbjct: 767  NKSHAAAYAVVSYQTAWLKANHAVEFMAGVMNCDIHLTDKLAVYFQEVRRGLKLGTVPPC 826

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
            VN     F V D ++ Y+L A+K VG    R ++EA A KPF +L DF  RVD K++ +R
Sbjct: 827  VNRSLATFDVVDGKLVYALGALKNVGVDAMRLVVEARAGKPFVTLFDFARRVDLKRVGKR 886

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE +  AGA D    +R ++L+SLD +  Y+  V + R++   ++F  E G    +  L
Sbjct: 887  PLEMMARAGAFDVLDSNRRRVLESLDALVAYSVAVHEQRSSNQVSLFG-EGGDDLPEPRL 945

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLA 998
                   ++ R   E + +GFY SGHPLD + P LR+ G+    E     +      R+A
Sbjct: 946  PNVPDWLAAERLGEEFKAIGFYLSGHPLDDHMPGLRRKGVLTLSEVEGKAQNGAFLARMA 1005

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +V  +Q++K+ +G+R  +   S+P+ +YE   F
Sbjct: 1006 GVVSGRQERKSARGNRFAFAQLSDPSGQYEVTIF 1039


>gi|26988338|ref|NP_743763.1| DNA polymerase III subunit alpha [Pseudomonas putida KT2440]
 gi|24983087|gb|AAN67227.1|AE016349_8 DNA polymerase III, alpha subunit [Pseudomonas putida KT2440]
          Length = 1174

 Score = 1081 bits (2796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1063 (39%), Positives = 599/1063 (56%), Gaps = 56/1063 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL+VHS +SL++G + +  +   +     PA+AITD +N+ S ++F + A  AGI
Sbjct: 2    SVPFVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G  L +           G  P   +  I  L    +GY+ L EL+SR +   Q   
Sbjct: 62   KPICGADLWLA----------GADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             V +   W+    +EGLI L+ G  G I  A        AE  L  +  +F +R YV +Q
Sbjct: 112  LVILQREWIA-PASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQ 170

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R +R  D       V LA     PLVATN+  F+ + D++AH+  + +     +    RP
Sbjct: 171  RTNRARDEEYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRP 230

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               +   YLK+  EM  +FSDLP+A+ NTVEIA+RC+  +Q+    LP F       I  
Sbjct: 231  RCYSDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI-- 288

Query: 306  EEENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              ++ LR+ A  GLE RLA     +         Q Y  RL FEL++I +M F GYFLIV
Sbjct: 289  --DDYLRHVAHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIV 346

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+
Sbjct: 347  MDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDV 406

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI YV   YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP
Sbjct: 407  DFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP 466

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +    +  +A   +   R+    D     + +++ KLEG+ R    HA G+VI    L+
Sbjct: 467  FEVGMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLT 525

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVK 595
               P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ +      +    
Sbjct: 526  DFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +++  IP DD +TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+
Sbjct: 586  LNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPL 645

Query: 656  DNIVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 646  QSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKF 825

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V +  RI Y L AIKGVG      I+EA A   PF  L DFC R+D K++N+R L++LV
Sbjct: 826  TVNNDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALV 885

Query: 887  FAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--H 929
             +GALD  G                +R  LL +L    K A+       + H ++F    
Sbjct: 886  RSGALDRLGPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMF 945

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
            +           K        R + E+  LG Y +GHP+D Y+  +R+   +   +   +
Sbjct: 946  DAADVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPS 1005

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   +A M+++ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1006 RETQ--TIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046


>gi|145637722|ref|ZP_01793374.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittHH]
 gi|145269071|gb|EDK09022.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittHH]
          Length = 1159

 Score = 1081 bits (2796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1048 (38%), Positives = 604/1048 (57%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG            +  +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGA----------DVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGY 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 111  N-DLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFYL 168

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    +  R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNEERYIQAALKLAEHCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP   T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +   
Sbjct: 229  KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL-- 286

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +      Y +RL  EL+VI +M F GYFLI
Sbjct: 287  ---STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT E+DN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +     Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A ++V+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAITKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|52424629|ref|YP_087766.1| DNA polymerase III subunit alpha [Mannheimia succiniciproducens
            MBEL55E]
 gi|52306681|gb|AAU37181.1| DnaE protein [Mannheimia succiniciproducens MBEL55E]
          Length = 1159

 Score = 1081 bits (2796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1045 (39%), Positives = 606/1045 (57%), Gaps = 39/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+++G   +  ++     +   A+A+TD  N    ++F  +A  +GI+
Sbjct: 4    PRFVHLRVHSDFSMIDGIAKVKPLVKTCVQENMVAMALTDFTNFCGLVKFYGEALGSGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G            ++ +          + LL     GY+ +  L+S+ Y     +  
Sbjct: 64   PIMGA----------DVSVKSDLCGDEHFELTLLAKNNAGYKNITLLLSKAYQRG-YEDV 112

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF-NSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              I   WL E   EG+I+L+GG  G + +      ++   E  +  ++K F D  Y++L 
Sbjct: 113  PYIDQDWLAEY-NEGIIVLSGGRKGDVGKKLLKTGAADEVESAVGFYQKYFPDHYYLSLS 171

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R     +       ++LA  H LP+VATN+ +FL  ED+EAH++ +A+     +    RP
Sbjct: 172  RTGHNEEETYIKTALKLAEKHNLPVVATNDVVFLKSEDFEAHEIRVAIHDGFTLDDPKRP 231

Query: 247  RVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            ++  D  Y ++  EM  +F+D+P ALENT+ IA+RC+  +++    LP+F   E      
Sbjct: 232  KLYSDRQYFRSEQEMCELFADIPSALENTLLIAQRCNVTIRLGEYFLPQFPTGEL----- 286

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+ L  +A  GLE RL         +      Y +RLD EL VI +M F GYFLIV +
Sbjct: 287  STEDYLIKRAKDGLEERLKVLFPDEKEREEKRPAYDERLDTELGVINQMGFPGYFLIVME 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD+VI +V + YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP D
Sbjct: 407  CMDNRDKVIEHVADMYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A   + + ++   +D  V  L+++++KLEG+ R+A  HA G+VI    ++  
Sbjct: 467  PGMTL-AKAFDAEPQLQQIYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPTLITDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVD 597
             P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R        +D
Sbjct: 526  SPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMDRDGKPHID 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD E+++LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+++
Sbjct: 586  INHIPLDDPESFNLLLKSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLES 645

Query: 658  IV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +   + +RK+G+E++        H  + P+L+ T GVI+YQEQVMQIAQ L+GY+L  A
Sbjct: 646  GMVQNFIDRKHGREEVAYPDAQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  F  GA + GI   +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DLLRRAMGKKKPEEMAKQRSVFEKGAIEKGIDGELAMKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+KTHYP EF+AA MT EMDN +KI     +  +  + + PP +NT    F V
Sbjct: 766  LVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLTVTPPDINTGKHHFSV 825

Query: 831  GDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D+    Y + AIKGVG      ++ A      F  L D C+RVD KK+NRR  ESL+ +
Sbjct: 826  NDHGEIVYGIGAIKGVGEGPIEALVSAREKGGIFKDLFDLCARVDLKKINRRTFESLIMS 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVEN 947
            GA D  G  R  L ++L++  K +    K+      ++F    +     +I        +
Sbjct: 886  GAFDKLGPHRAALSKNLEDALKASDQHAKDEAAGQADMFGVLTESPEEVEIAYANTPRWS 945

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                 + E+  LG Y S HP+  Y   L        ++ V  IRG     + +VV+ +  
Sbjct: 946  EKQILDGERETLGLYLSSHPISRYLKELSHYSPNRLKDLVPNIRGQVSTASGLVVASRFA 1005

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T+KG+R+G  T  + +   +   F
Sbjct: 1006 VTKKGNRLGIATLDDRSGRLDITLF 1030


>gi|84514324|ref|ZP_01001688.1| DNA polymerase III subunit alpha [Loktanella vestfoldensis SKA53]
 gi|84511375|gb|EAQ07828.1| DNA polymerase III subunit alpha [Loktanella vestfoldensis SKA53]
          Length = 1188

 Score = 1081 bits (2796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 506/1079 (46%), Positives = 684/1079 (63%), Gaps = 69/1079 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP F+HL+ H+ YSLLEGA+ + ++    A    PA+A+TDTNN+F ALEFS+ A  
Sbjct: 1    MTDSPRFIHLRTHTEYSLLEGAVPVKSLAPLAAGMGMPAVAVTDTNNMFCALEFSEYAVK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQLD+         + GK P P  P IVLL     GY  L++L S  YL   
Sbjct: 61   AGVQPIIGCQLDLAYAT----PDPGKRPEPPAP-IVLLAQNEAGYLNLMKLNSCAYLDAA 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G +  ++ +  L + G  GLI LTGG  GPI R         A+  L     ++  RLYV
Sbjct: 116  G-ELPQVTVDELAQYG-TGLICLTGGPDGPIGRLLRHGQQAKADLLLDQLAAIYPQRLYV 173

Query: 185  NLQRHR------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH         +R  E   +++AY   LPLVATN+  F     YEAHD L+ +A   
Sbjct: 174  ELQRHPVDGGLPEAERLSERGHIEMAYAKGLPLVATNDVYFPKSAFYEAHDALICIADGA 233

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q++ R R+TP HY K+  EM ++F+DLPEALENT+EIA+RC+F     APILP+F +
Sbjct: 234  YVDQQEPRRRLTPQHYFKSPREMATLFADLPEALENTIEIAQRCAFKAYKRAPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E          ELR +A  GL  RLA   I      +DY +RLDFEL +I  M F GYF
Sbjct: 294  DEV--------AELRRQAQEGLRARLA--VIPHAASIEDYEKRLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK N IPVGPGRGSGAGS+ AYAL ITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKDNGIPVGPGRGSGAGSLVAYALLITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ+KYG +RV QIITFG+L +KAA+RDVGR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIRYVQDKYGRDRVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+ +A+AD+ R RE    +  V RLL  +Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALADEPRLREEAKNEEVVQRLLTYAQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-- 594
            RPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++  +++ + + G   
Sbjct: 524  RPLDELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIHNAVELIRKAGRSL 583

Query: 595  ----------------KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                            + D+  IP DD ++Y L  +  T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  NVTADGDVLYQPPVGFEYDIGAIPLDDAKSYALYASAKTIAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG +++ SIHP ID +L ETQG+I+YQEQVM+I
Sbjct: 644  CIEDIVALVALYRPGPMENIPTYCEVKNGIKELESIHPSIDHILAETQGIIVYQEQVMEI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F +GA  NG+    A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEAGAKANGVEPKKAREVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++   I  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLGVYFQEVKKGLGIDYI 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD------------------ 859
            PP VN     F+V D ++ Y+L A+K VG    + I+                       
Sbjct: 824  PPCVNRSGATFEVQDGKLVYALGALKNVGVEAMKLIVAGREGHPGLDPGPHSAGGPGSAS 883

Query: 860  ----KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
                KPF +L DF  R D K++ +R LE L  AGA D    +R +++ SLD +  Y+  +
Sbjct: 884  GATPKPFVNLFDFARRCDLKRIGKRSLEMLARAGAFDVLDRNRRRVMASLDALTAYSAAI 943

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
               +++   ++F  + G    +  L        + R   E + +GFY SGHPLD Y   L
Sbjct: 944  HDQKSSNQVSLFG-DAGEDLPEPRLAFGDDWLPAERLAEEFKAIGFYLSGHPLDDYMGAL 1002

Query: 976  RKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++  +   +E +A        +++A  V  +Q++K+ +G+R  +V  S+P  +YE   F
Sbjct: 1003 KRKQVLTLDEVIARAEKGAALVKMAGTVSGRQERKSARGNRFAFVQLSDPTGQYEVTMF 1061


>gi|317052727|ref|YP_004113843.1| DNA polymerase III subunit alpha [Desulfurispirillum indicum S5]
 gi|316947811|gb|ADU67287.1| DNA polymerase III, alpha subunit [Desulfurispirillum indicum S5]
          Length = 1163

 Score = 1081 bits (2795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1048 (39%), Positives = 614/1048 (58%), Gaps = 34/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA+ +  ++ K      PA+A+TD  N+F A++F ++   AGI+P
Sbjct: 2    SFVHLHLHTMYSLLDGAIKIPELVKKAKEYGMPAVAMTDHGNMFGAVDFYKQCTKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +     ++     +  +     +VLL     GY+ LI +VS+ YL        
Sbjct: 62   ILGCEVYVSPGS-MREKRNAEGVYEGAYHLVLLAENMTGYRNLIYMVSQGYLEG-FYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            RI    L+E  +EG+I L+    G +        ++ A +  L + ++FG+   ++ LQ 
Sbjct: 120  RIDKELLREC-SEGIIALSACLGGEVPNQLLAGDTEGARRSALEYLEIFGEGNFFLELQE 178

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   D+     Q++ LA    +P+VATN+  +L+ ED +AHD+L+ +   +    + R R
Sbjct: 179  NGMDDQRAVNRQLIALAEETGIPMVATNDCHYLNREDAKAHDILLCIQTQSNFDDEKRFR 238

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  Y K+   M   F  + +A+ NTV+IA RC+  L++    LP++        +  
Sbjct: 239  FDSDQLYFKSPETMHKDFGHIKDAIANTVKIAERCNVQLEMGKVYLPKYDIP----AEHT 294

Query: 307  EENELRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E+ +   +  GL  R AQ   +   Y    Y +RL+ EL+VI  M F GYFLIVADFIQ
Sbjct: 295  LESYIGEVSRKGLLERFAQFDRLGLTYDRPAYEERLEIELDVINSMGFPGYFLIVADFIQ 354

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            W K  +IPVGPGRGS AGS+ AYAL ITDIDP+ ++LLFERFLNP+R+SMPD DIDFC +
Sbjct: 355  WGKDQDIPVGPGRGSAAGSLVAYALKITDIDPIPYNLLFERFLNPERVSMPDIDIDFCMN 414

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV+ KYG + V QI+T+ SLQAK  LRDV R + +PYS  D+L KL+PN    
Sbjct: 415  RRGEVIDYVRKKYGDQNVCQIVTYASLQAKGVLRDVCRVMGLPYSDGDKLSKLVPNKLGI 474

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +AI+ + + +EA  A P  + LL+ S  LEGL+R A  HAAGIVI D P+    P+
Sbjct: 475  TLD-EAISMEPKLKEAAAAMPHGENLLKYSLALEGLFRQAGMHAAGIVITDEPIYTYAPL 533

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVDLSLIP 602
             R    + PV QF+    E  GL+KFDFLGLKTLT++ ++  F+ Q      K D+S I 
Sbjct: 534  SRGPEGE-PVCQFDKDKAEDIGLVKFDFLGLKTLTVIDEACRFVQQTQKLPAKFDISAIA 592

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD  TY LL +  + GIFQLES GMR  L  ++P   EDI+A+++LYRPGP+ + +V  
Sbjct: 593  MDDQPTYDLLCSGKSAGIFQLESGGMRSLLTKLKPSNFEDIVAVLALYRPGPLGSGMVDD 652

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + +RK G+ +I+ + P ++P+LK+T GVI+YQEQVMQIA+ + GYSL  AD+LRRAMGKK
Sbjct: 653  FVDRKQGRSEILYLFPELEPILKDTYGVIVYQEQVMQIARTIGGYSLGAADLLRRAMGKK 712

Query: 721  IKEEMDKQKERF-------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
             +EEM KQKE F       + GA   G     A  +F+L+A FA YGFNKSH+AAYA+++
Sbjct: 713  KEEEMVKQKEIFLHGDGDKVPGAKAMGFDLKKAEQVFDLMAYFAGYGFNKSHSAAYALVA 772

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K HYP E +AA ++ EMDN +K+ +F  + +   +++ PP +N     F V ++
Sbjct: 773  YQTAYLKAHYPSELMAALLSCEMDNTDKVVQFINECKSMGLEVHPPHINLSGHSFTVDED 832

Query: 834  RI--YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                 + L AIK VG+     I++    + PF SL DF  RVD + +N+RV+E+L+  GA
Sbjct: 833  GRSIIFGLTAIKNVGSKAVEAILQERQENGPFTSLYDFTERVDLRSVNKRVVENLIKCGA 892

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-----GTFSDKITLEKFSV 945
             D    +R QL+ +LD+     Q ++K+R     ++F  E         S          
Sbjct: 893  FDSVHANRRQLIGALDHAFSLGQTIQKDREAGQISLFEMEAQDDSSDDLSHHEEYPDVED 952

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             N++ R   E+  LGF+ SGHPL+ ++ +L            A  +G  +R+A ++ S Q
Sbjct: 953  WNTTTRVAFEKECLGFFVSGHPLEPFQSVLEGYTTPIASVLEAQKKGR-VRIAGVLSSLQ 1011

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K T+ G ++  +   +   + E   FP
Sbjct: 1012 PKTTKAGKKMAIIVVEDQTAKLEIPIFP 1039


>gi|332038321|gb|EGI74766.1| DNA polymerase III alpha subunit [Pseudoalteromonas haloplanktis
            ANT/505]
          Length = 1163

 Score = 1081 bits (2795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1047 (40%), Positives = 600/1047 (57%), Gaps = 42/1047 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS +S+++G      I+ K    Q PAIAITD  N    + F      AGI
Sbjct: 3    APDFVHLRVHSDFSMVDGLAKTKPIVAKAQELQMPAIAITDQMNFCGLVRFYGATHNAGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+G    +          +          + +L    +GY+ +  L+S+ Y       
Sbjct: 63   KPIVGADFWV----------RSPEFPDEPSRLTILAKDNDGYKNITLLISKAYQRGHVFH 112

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL E+   GLI+L+G   G + +A   N+  V E  +  +K+ F D  Y+ L 
Sbjct: 113  RPVIDREWLVEL-KAGLIILSGAKDGDLGKALLKNNPTVIESVVSFYKQHFSDNYYLELV 171

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R +R  +       V+LA   +LP+VATN  +FL  E++EAH++ +A+     +  K RP
Sbjct: 172  RTNRPLEEDYLHMAVELAAKEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDKRRP 231

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R + + YLK   +M  +FSD+PEAL+NTVEIA+RC+  +Q+    LP +          
Sbjct: 232  KRFSEEQYLKTPEQMAELFSDIPEALQNTVEIAKRCNVTVQLGTYFLPDYPTGSL----- 286

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            + E+ L   +  GLE RL         +     +Y +RL  EL VI +M F GYFLIV +
Sbjct: 287  KIEDFLVKVSQDGLEERLQFLFPDEEDRKVKRVEYDERLAIELGVINQMGFPGYFLIVME 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP D
Sbjct: 407  CMDRRDEVIDHVSALYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPGD 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A   + R +EA   D  V  L+++ + LEG  R+A  HA G+VI    ++  
Sbjct: 467  PGMTL-AKAFDVEPRLQEAYDGDNEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTITDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
              +Y D     PVTQF+   +E AGL+KFDFLGL+TLT+LQ ++D    R  +      D
Sbjct: 526  AALYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWAVDMTNVRMKRQGKDPVD 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD ++  LL    T  +FQLES GM+  +  ++PDC ED+IALV+L+RPGP+ +
Sbjct: 586  INTIPLDDKKSIELLLRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGPLQS 645

Query: 658  IV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +   + +RK G+E+I        H  + P+L  T G+I+YQEQVMQIAQ+L+GY+L  A
Sbjct: 646  GMVDNFIDRKLGREEISYPDAQYQHESLKPILDPTYGIILYQEQVMQIAQVLAGYTLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  F  GA  NGI   +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DMLRRAMGKKKPEEMAKQRSTFEDGARNNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT WMKTH+P EF+AA M+ +MDN +KI     +     + ++PP VN     F V
Sbjct: 766  LVSYQTLWMKTHHPAEFMAAVMSADMDNTDKIVILVDECENMKLTLLPPDVNAGEFKFTV 825

Query: 831  G-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              +  I Y + AIKGVG      I+EA A   PF  L DFC+RVD K+LN+RV E L++A
Sbjct: 826  NLEGEIVYGIGAIKGVGEAPVDAILEARAKGGPFKDLFDFCARVDLKRLNKRVTEKLIYA 885

Query: 889  GALDCFGYS-----RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEK 942
            GALD  G       R  LL SL +  + A    K       ++F        + +    K
Sbjct: 886  GALDQLGPEKTQSGRATLLASLKDAMRAADQHNKAEQLGQSDLFGLLATEPDEVEQAFIK 945

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             +    +   + E+  LG Y +GHP++ Y+  LR        +   T R      A +V+
Sbjct: 946  ATGLTDNEWLDGEKETLGLYLTGHPINQYRRELRHYTSGKIVDLQPTNRDVFATAAGLVI 1005

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            + +    +KG+R   VT  + +   + 
Sbjct: 1006 ASRVLINKKGNRWALVTLDDKSARIDV 1032


>gi|301169460|emb|CBW29060.1| DNA polymerase III alpha subunit [Haemophilus influenzae 10810]
          Length = 1159

 Score = 1081 bits (2795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1048 (38%), Positives = 603/1048 (57%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG            +  +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGA----------DVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGY 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 111  N-DLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    +  R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP   T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +   
Sbjct: 229  KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL-- 286

Query: 303  IQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLI
Sbjct: 287  ---STEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT E+DN +KI     +  +  +++MPP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVMPPDINIGKHH 822

Query: 828  FKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +     Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A ++V+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAITKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|220934350|ref|YP_002513249.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995660|gb|ACL72262.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1162

 Score = 1081 bits (2795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1052 (40%), Positives = 627/1052 (59%), Gaps = 44/1052 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL +H+ +SL++G + +  ++  +     PA+A+TD  NLF  ++F + A  AGI
Sbjct: 2    TTSFVHLHLHTEFSLVDGLVRVEPLVQAVREAGMPAVAVTDQGNLFGMVKFYKAALKAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ-GK 126
            +PI+G    +                     +VLL    +GY+ L  L+SR Y   Q   
Sbjct: 62   KPIVGVDTWVSAP----------QAGEAPSRLVLLAQDEDGYRNLTRLISRSYQEGQQSG 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             +  +   W  +  + GLI L+GG  G I RA   +    AE+    ++ LF  R Y+ +
Sbjct: 112  DAPVLDRGWF-DGASRGLIALSGGREGEIGRALMGSQPSAAEELCEFWEGLFPGRFYLEI 170

Query: 187  QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R     +       V LA +  LP+VATN+  FL+  D++AH+  + +    V+    R
Sbjct: 171  GRTGREGEEDHLHAAVDLAQSRSLPVVATNDVRFLAASDFDAHEARVCIHDGRVLDDPRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  YL+   EM ++F+D+PEALEN+VEIARRC+  L +   +LP +         
Sbjct: 231  PRDYTPQQYLRTAEEMAALFADIPEALENSVEIARRCNVSLTLGKSVLPEYPVPAGM--- 287

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIA-KGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
               ++  R  +  GL+ RLA   +G    +    + YR+RL+ EL+VI +M F GYFLIV
Sbjct: 288  -TTDDYFRKASREGLDARLAVILEGVTDNREAKERAYRERLEIELDVICQMGFPGYFLIV 346

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFIQWAK N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDI
Sbjct: 347  ADFIQWAKDNAIPVGPGRGSGAGSLVAYALKITDLDPLLYDLLFERFLNPERVSMPDFDI 406

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD VI YV  +YG E+V+QIIT G++ AKA +RDVGR L  PY  VDR+ KLIP
Sbjct: 407  DFCMEQRDRVIDYVAQRYGREKVSQIITHGTMAAKAVVRDVGRVLGHPYGFVDRIAKLIP 466

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +    +  +A+  +   R     D  V  L+++++KLEG+ R+A  HA G+VI    L+
Sbjct: 467  FEIGMTLD-KALEQEEELRRLYEEDEEVSGLIDLARKLEGVARNAGKHAGGVVIAPTELT 525

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----K 595
               P+Y +      VT F+   +E  GL+KFDFLGL+TLT++  ++  + Q+        
Sbjct: 526  DFSPLYCEPGGQSVVTHFDKDDVEAVGLVKFDFLGLRTLTIIDWAVRTIDQQRKAEGQAP 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D++ IP DD ET+ LL  + T  +FQLES GM++ ++ +QPD  EDI+ALV+LYRPGP+
Sbjct: 586  LDVNRIPLDDPETFGLLKRQETTAVFQLESRGMKELIKRLQPDVFEDIVALVALYRPGPL 645

Query: 656  DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             + +V  + NRK+G+ K+   HP ++P+LK T GVI+YQEQVMQIAQ+L+GY+L  AD+L
Sbjct: 646  QSGMVDDFINRKHGRAKVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLAGYTLGGADML 705

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM KQ+E F++GA+  G+ +  A  IF+L+ KFA YGFNKSH+AAYA++S
Sbjct: 706  RRAMGKKKPEEMAKQREIFLAGATGRGVQEATASYIFDLMEKFAGYGFNKSHSAAYALLS 765

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTAW+K HYP  F++A ++ +MD+ +K+    ++ R   + ++PP +N     F V D 
Sbjct: 766  YQTAWLKQHYPAAFMSAVLSADMDHTDKVVNLIEECRAMELHVVPPDINRSQHRFGVADA 825

Query: 834  RI-YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            R   Y L AIKGVG +  + +++A  A  PF SL+D C R DS+K+NRR LE+L+ AGAL
Sbjct: 826  RTVIYGLGAIKGVGESAIQALIQAREAGGPFQSLDDLCVRADSQKINRRTLEALIRAGAL 885

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D  G +R  L+ +L      A+   +N +   E++F       +  +  E+    +  +R
Sbjct: 886  DSIGPNRATLMANLPKALSRAEQHLRNESLGQEDLFGGPVTPGASDVDDEQLPEWDEDLR 945

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-----------TIRGNNIRLAAM 1000
               E+  LG Y +GHP+D ++  L+ +  K   + VA             +     +  +
Sbjct: 946  LSAEKETLGLYLTGHPIDRFQAELKAIHSKRIADLVAEVGDQTPGEGRRRKEQQATVGGL 1005

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V++ + K T+ G RIG+VT  + +   E   F
Sbjct: 1006 VINIRTKPTQTG-RIGFVTLDDRSGRIEVGLF 1036


>gi|152979519|ref|YP_001345148.1| DNA polymerase III subunit alpha [Actinobacillus succinogenes 130Z]
 gi|150841242|gb|ABR75213.1| DNA polymerase III, alpha subunit [Actinobacillus succinogenes 130Z]
          Length = 1158

 Score = 1081 bits (2795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1044 (39%), Positives = 601/1044 (57%), Gaps = 38/1044 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+ HS +S+++G   +  ++     +   A+ +TD  N    ++F  +A +AGI+
Sbjct: 4    PRFVHLRTHSDFSMIDGIAKVKPLVKACVREDMVAMGLTDFTNFCGLVKFYGEALSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G            +             + LL    EGY+ +  L+S+ Y        
Sbjct: 64   PIVGA----------DVLVSSALCGDERFELTLLAKNNEGYKNITLLLSKAYQRGYD-DL 112

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+GG  G I +    +    AE  L  ++K F +  Y++L R
Sbjct: 113  PYIDRDWLIE-HKEGLIILSGGRRGDIGQKLLKDKFADAESALGFYQKFFPNHFYISLAR 171

Query: 189  HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
               YD  R  +  + LA  H +PLVATN+ +FL  ED+EAH++ +A+     +    RP+
Sbjct: 172  VGHYDEERYIRAAMDLAKKHRIPLVATNDVVFLKTEDFEAHEIRVAIHDGYTLDDPKRPQ 231

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              TP  Y ++  EM  +F+D+P ALENT+ IA+RC+  +++    LP+F   E       
Sbjct: 232  LYTPQQYFRSEQEMCELFADIPTALENTLLIAQRCNVTIRLGQYFLPQFPTGEL-----S 286

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  +A  GLE RL         +  + + Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 287  TEDYLVKRAKDGLEERLEFLFPDPKVRSENRRKYDERLETELGVINQMGFPGYFLIVMEF 346

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 347  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 406

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + RD VI +V   YG   V+QIITFG++ AKA +RDVGR L   Y  VDR+ KL+P DP
Sbjct: 407  MEGRDRVIDHVAETYGRSAVSQIITFGTMAAKAVIRDVGRVLGHAYGFVDRISKLVPPDP 466

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + + +EA  +D  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 467  GMTL-AKAFDMEPKLQEAYDSDEEVKELIDMARKLEGVTRNAGKHAGGVVISPTKITDFS 525

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ +  R       +V +
Sbjct: 526  PLYCDSEGRHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINARMVREGKPEVRI 585

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+ + 
Sbjct: 586  ESIPLDDPESFKLLLNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSG 645

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E++        H  + P+L+ T GVI+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 646  MVDNFIDRKHGREEVSYPDAEYQHISLKPILESTYGVILYQEQVMQIAQVLAGYTLGGAD 705

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 706  LLRRAMGKKKPEEMAKQRSVFEEGAVKNGIDGKLAMKIFDLVEKFAGYGFNKSHSAAYAL 765

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K H+P EF+AA MT EMDN +KI     +  +  +++ PP +NT    F V 
Sbjct: 766  VSYQTLWLKAHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINTGKHHFSVN 825

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D+    Y + AIKGVG      +++A  +   F  L D C+RVD K++NRR  ESL+ +G
Sbjct: 826  DHGEIVYGIGAIKGVGEGPIEALVKARNEGGIFKDLFDLCARVDLKQINRRTFESLIKSG 885

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L ++L++  + +    K+      ++F     G    +           
Sbjct: 886  AFDKLGPHRAALAKNLEDALQSSNQFAKDEAIGQADMFGVLTAGHEEVERKYANTPRWTE 945

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
                + E+  LG Y S HP+  Y   L        ++ V   RG       ++VS +   
Sbjct: 946  KQILDGERETLGLYLSSHPISRYLKELSHYTPNRLKDLVPNQRGQMTTACGLIVSSRFAV 1005

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T+KGSR+G  +  + +   +   F
Sbjct: 1006 TKKGSRLGIASLDDRSGRLDITLF 1029


>gi|323693196|ref|ZP_08107414.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
 gi|323502679|gb|EGB18523.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
          Length = 1176

 Score = 1080 bits (2794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1051 (36%), Positives = 573/1051 (54%), Gaps = 40/1051 (3%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E+  +F HL VH+ YSLL+ +  +  +  +       ++AITD   ++  ++F + A  A
Sbjct: 14   EQGVAFTHLHVHTEYSLLDASSKIKELTARAKELGMDSLAITDHGVMYGVIDFYRAAKEA 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIGC++ +         N           ++LL     GYQ L+++VS+ ++    
Sbjct: 74   GIKPIIGCEIYVAPGSRFDRENVNGE--DRYYHLILLAENNVGYQNLMKIVSKGFVEG-F 130

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYV 184
                R+    L+E  +EG+I L+    G + R       + A K  L ++++FG+   ++
Sbjct: 131  YYKPRVDFEVLREY-SEGIISLSACLGGEVQRYLTRGMYEEACKSALRYQEIFGEGNFFL 189

Query: 185  NLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ H    +   +Q +++++    +PL ATN+  ++ +ED E+HD+L+ +     V+ +
Sbjct: 190  ELQDHGIPAQKTVNQGLLRMSQELGIPLTATNDCHYIYKEDVESHDILLCIQTGKKVADE 249

Query: 244  DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +R R      YLK+  EM  IF    +AL+NT +IA RC+  ++     LP+F   E   
Sbjct: 250  NRMRYEGGQFYLKSEEEMREIFPYAADALDNTHKIAERCNVDIEFGVTKLPQFDVPEG-- 307

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                    LR     G                   ++RL++EL VI  M +  YFLIV D
Sbjct: 308  --YTSWEYLRKLCFDGFNKHYPDDDGT-------LKERLEYELGVIQSMGYVDYFLIVWD 358

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI +AK ++I VGPGRGS AGS+ AY+L ITDIDP+R+ LLFERFLNP+R+SMPD DIDF
Sbjct: 359  FIHFAKSHDIMVGPGRGSAAGSIVAYSLGITDIDPIRYQLLFERFLNPERVSMPDIDIDF 418

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV +KYG +RV QI+TFG+L AK  +RDVGR L MPY++ D + K+IP D
Sbjct: 419  CFERRQEVIDYVVSKYGKDRVVQIVTFGTLAAKGVVRDVGRVLDMPYAKCDSIAKMIPGD 478

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+      R A   D  V  L+++S++LEGL RH S HAAG+VI    + + 
Sbjct: 479  LGMTLD-KALKASPDLRNAYQEDDEVKYLIDMSRRLEGLPRHTSMHAAGVVISKASVDEY 537

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLI 601
            VP+ R        TQF M  +E+ GL+K DFLGL+TLT++Q ++    +   K +DL  I
Sbjct: 538  VPLSRAA-DGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVRLAEKTCKKTIDLYNI 596

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             ++D      + T    G+FQLESSGM+  ++ ++P+ +EDIIA +SLYRPGP+D I  Y
Sbjct: 597  DYNDKNVLDAIGTGKNDGVFQLESSGMKSFMKELKPENLEDIIAGISLYRPGPMDFIPRY 656

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               KN K+ I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D++RRAM KK 
Sbjct: 657  LKGKNDKKSITYECPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKK 716

Query: 722  KEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               M+K+++ F+         G   NGI +  A +I++ +  FA Y FNKSHAAAYAV+S
Sbjct: 717  GSVMEKERQNFVYGNGEEGVKGCIANGIDEKTANHIYDEMIDFAKYAFNKSHAAAYAVVS 776

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K +YPVEF+AA MT   DNV K+ ++    RQ  ++I+PP +N     F V   
Sbjct: 777  YQTAYLKYYYPVEFMAALMTSVKDNVTKVSEYIMACRQMGMKIVPPDINEGEGGFSVSGG 836

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L+AIK +G +    I+ E      F +LEDF  R+ SK++N+R LES + +GA+D
Sbjct: 837  SIRYGLSAIKSIGQSVVEEIVKERRERGEFKTLEDFVDRMSSKEVNKRTLESFIKSGAMD 896

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSV 950
                +R Q       +       +KN       +F        +  ++T           
Sbjct: 897  SLPGTRKQKFLVSAQLLDQKNKEKKNSMEGQMTMFDFVAEEEKENFQVTFPNVGEYTKDE 956

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVV 1002
                E+ +LG Y SGHP++ Y  +  K       + +            G  + +  M+ 
Sbjct: 957  LLYFEKEMLGVYISGHPMEAYIGLWEKNVTARTSDFIVDEETGEAQVRDGAIVTIGGMLT 1016

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +K  K TR    + +VT  +     E   FP
Sbjct: 1017 AKTVKTTRTNKMMAFVTIEDLYGSVEVLVFP 1047


>gi|315633674|ref|ZP_07888964.1| DNA-directed DNA polymerase III alpha subunit [Aggregatibacter segnis
            ATCC 33393]
 gi|315477716|gb|EFU68458.1| DNA-directed DNA polymerase III alpha subunit [Aggregatibacter segnis
            ATCC 33393]
          Length = 1172

 Score = 1080 bits (2794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1046 (39%), Positives = 604/1046 (57%), Gaps = 38/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHLQVHS +S+++G   +  ++     +   A+ +TD  N    + F  +A ++G
Sbjct: 16   SPPRFVHLQVHSDFSMIDGIAKVKPLVKACVENNMVAMGLTDFTNFCGLVRFYGEALSSG 75

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG            +  Q +        + LL    EGY+ +  L+S+ Y      
Sbjct: 76   VKPIIGA----------DVLVQNELCGEERFRLTLLAKNNEGYKNITLLLSKAY-ERGYA 124

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E    G+I+L+GG +G + +    +++   +  +  + + F D  Y+ L
Sbjct: 125  DVPYIDQQWLVE-HRAGVIVLSGGVNGDVGKKLLRSNTDELKSAVDFYHEFFPDHFYLTL 183

Query: 187  QRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D     Q  ++LA   +LP+VATN+  FL  ED+EAH++ +A+     +    R
Sbjct: 184  TRTGRPDEEHYIQAALELAEREQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKR 243

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   T   Y ++  EM  +F+D+P ALENT+ IA+RC+  +++    LP+F   +     
Sbjct: 244  PKNYTSQQYFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGEYFLPKFPTGDL---- 299

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 300  -STEDYLVKRAREGLEARLKVLFPDENERAARRAEYDERLQVELDVINQMGFPGYFLIVM 358

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 359  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 418

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 419  FCMDGRDRVIEHVAEMYGRGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPP 478

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + + +E   AD  V  ++++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 479  DPGMTL-AKAFEAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITD 537

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R        V
Sbjct: 538  FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKPLV 597

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DDH+++ +L    T  +FQLES GM+  ++ ++PDC EDIIALV+L+RPGP+ 
Sbjct: 598  DINTIPLDDHQSFEVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQ 657

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 658  SGMVDNFIDRKHGREEVSYPDANYQHETLKPILEPTYGIILYQEQVMQIAQVLAGYTLGG 717

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 718  ADLLRRAMGKKKPEEMAKQRSVFEEGAIKNGIDGDLSMKIFDLVEKFAGYGFNKSHSAAY 777

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT EMDN +KI     +  +  ++++PP +NT    F 
Sbjct: 778  ALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECMRMGLKVVPPDINTGKHHFS 837

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V +N    Y + AIKGVG      ++EA   D  F +L D C+RVD KK+NRR  ESL+ 
Sbjct: 838  VNENGEIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIK 897

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946
            +GA D  G  R  L Q+L++  + +    K+      ++F     T  + + +    +  
Sbjct: 898  SGAFDKLGPHRAALQQNLEDALRASDQHAKDEALGQTDMFGVLTETNEEVEHSYANIAPW 957

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                  + E+  LG Y S HP+  Y   L        +E     RG     + +VV+ + 
Sbjct: 958  TEKTILDGERETLGLYLSSHPVSRYLKELSHYSPMRLKELTPNYRGQMSTASGLVVNTRI 1017

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+KG+ IG  T  + +   +   F
Sbjct: 1018 AVTKKGNHIGIATIDDRSGRLDLTLF 1043


>gi|156975491|ref|YP_001446398.1| DNA polymerase III subunit alpha [Vibrio harveyi ATCC BAA-1116]
 gi|156527085|gb|ABU72171.1| hypothetical protein VIBHAR_03222 [Vibrio harveyi ATCC BAA-1116]
          Length = 1143

 Score = 1080 bits (2794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1031 (39%), Positives = 603/1031 (58%), Gaps = 37/1031 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G   +  ++ K+A    PA+A+TD  NL   +++   A  +G++PIIG    +    
Sbjct: 1    MVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGTAHGSGVKPIIGADFKM---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + LL +  EGY+ L  L+S+ YL    +    +  +WL E+ +
Sbjct: 57   ------QSDEFGEELTQLTLLAANNEGYKNLTLLISKAYLRGHVQHQPVLDKAWLAEL-S 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+G  +G I +A    + +V +  +  + + F DR Y+ L R    D        
Sbjct: 110  EGLIVLSGAKNGEIGKALLKGNRKVVDSCVEFYNQYFPDRFYLELVRTGRPDEETYLHFA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            ++LA   ELP+VATN  +F+SE+ ++AH++ +A+     +    RP   +P+ YL+   E
Sbjct: 170  IELAEELELPVVATNEVVFISEDLFDAHEIRVAIHDGYTLEDPRRPKNYSPEQYLRTEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       EE + L  K+  GL
Sbjct: 230  MCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMEETDFLVMKSREGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y  RL  EL+VI +M F GYFLIV +FIQW+K N IPVGP
Sbjct: 285  EERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLE-KAFKAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
               E   AD  V  L+++ + LEG  R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  ALPELYDADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFAPIYADSEGHFPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L  +  R  +       +  IP DD  ++ L
Sbjct: 524  QFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKDPVRIESIPLDDAASFRL 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  AISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKMHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  + ++PP +N     F V  +  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINAGLYRFNVDENGAIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L DFC+R+D KK+N+RV+E L++AGALD  G  R  L+
Sbjct: 824  GVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL++  K A    +       ++F          +    +       V  E E+  LG 
Sbjct: 884  ASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPAWPEKVWLEGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y +GHP++ Y   L K      +++  T R  ++ +A +V++ +   T++G+RIG +T  
Sbjct: 944  YLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTRIGIMTLD 1003

Query: 1022 EPAKEYEANFF 1032
            + +   E   F
Sbjct: 1004 DRSGRMEVMLF 1014


>gi|68249339|ref|YP_248451.1| DNA polymerase III subunit alpha [Haemophilus influenzae 86-028NP]
 gi|68057538|gb|AAX87791.1| DNA polymerase III alpha subunit [Haemophilus influenzae 86-028NP]
          Length = 1159

 Score = 1080 bits (2794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1048 (38%), Positives = 602/1048 (57%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSFQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG            +  +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGA----------DVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGY 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 111  N-DLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    +  R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP   T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +   
Sbjct: 229  KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL-- 286

Query: 303  IQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLI
Sbjct: 287  ---STEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFETEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +     Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A +VV+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAMTKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|224369575|ref|YP_002603739.1| DnaE [Desulfobacterium autotrophicum HRM2]
 gi|223692292|gb|ACN15575.1| DnaE [Desulfobacterium autotrophicum HRM2]
          Length = 1184

 Score = 1080 bits (2794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1045 (38%), Positives = 611/1045 (58%), Gaps = 24/1045 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++    F HL VH+ +SLL+GA+ L+ +L +        +AITD   +F    F++KA  
Sbjct: 2    MDTPSPFCHLHVHTEFSLLDGAIRLDALLKRCKEFNMDTVAITDHGTMFGTAPFNEKARK 61

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GIQPI+GC++ +  +    + N+       +  +VLL    EGY  L +LVS       
Sbjct: 62   VGIQPILGCEVYVAPRS---IRNKTAEDNKGLNHLVLLAKDREGYGNLCKLVSIAQFEG- 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
                 RI    L +  ++GLI L+    G I +    N   +A      +   F  D  +
Sbjct: 118  FYYKPRIDRELLTKY-SKGLIALSACLKGDIPQKIIHNQMDLAFDSARYYLDTFGEDNFF 176

Query: 184  VNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q++    + + +Q + +++    +P+VATN+  +LS +   AH+ L+ +     ++ 
Sbjct: 177  LEIQKNGMEIQEKVNQGLWEVSKKLSIPMVATNDCHYLSRDHVRAHEALLCIQTGNTLND 236

Query: 243  KDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI----E 297
             +R +   D  Y K+  EM++ F   P A+ENT+ IA+RC+          PR+     E
Sbjct: 237  ANRFKFDSDELYFKSADEMIADFKTYPGAIENTLLIAKRCNVEFGEKVYHFPRYTSAQGE 296

Query: 298  KECDDIQKEEENELRNKAVAGLEVRL-AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            K  +D  +      + +A  G E RL              YR+RL +E+ VI  M F GY
Sbjct: 297  KSGEDCVQTAGEIFKRQAQEGFERRLKMLKRKNPNLDEALYRERLAYEIGVILDMGFPGY 356

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI++++++NIPVGPGRGS AGS+ AYA+ IT +DP+   L+FERFLNP R+SMP
Sbjct: 357  FLIVADFIRYSREHNIPVGPGRGSAAGSMVAYAMEITALDPIAHGLIFERFLNPSRISMP 416

Query: 417  DFDIDFCQDRRDEVIRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            D D+DFC + RDEV +YV ++YG  + V+QIITFG L+AKA +RDVGRAL +P  +VD L
Sbjct: 417  DIDVDFCIEGRDEVYKYVIDRYGGADYVSQIITFGKLKAKAVVRDVGRALSVPLPEVDVL 476

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KLIP++  +    QA+ D  R  E    DP    L++I+  LEGL R ASTHA G+VI 
Sbjct: 477  AKLIPDNAKN--LGQALKDVPRIMELVNQDPVKKELIDIALLLEGLPRQASTHACGVVIS 534

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594
            D+PL + +P Y+    ++ VTQF+M ++EK GL+KFDFLGL+ LT+++ +LD L  Q   
Sbjct: 535  DKPLVEYLPTYKGKEGEV-VTQFDMNFVEKLGLVKFDFLGLRNLTVIKNTLDLLKKQSKE 593

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              DL  I  DD  TY LL    T G+FQLESSGM++ +  +QP C  DI+ALV+LYRPGP
Sbjct: 594  VPDLLEIDMDDPPTYELLARADTTGVFQLESSGMKELITRLQPACFSDIVALVALYRPGP 653

Query: 655  IDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +D+ +   Y  RK+G+E +V + P ++P+LKET GVI+YQEQVM+IA +L+ YS+++AD 
Sbjct: 654  LDSGMADSYVERKHGREDVVYLFPQLEPILKETYGVILYQEQVMKIAGVLANYSMADADG 713

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LR+AMGKKI   M++ +  F+ GA +N +    A  +F+L+ KF  YGFNKSH+AAYA+I
Sbjct: 714  LRKAMGKKIPAMMEEHRGLFLKGAKENNLDGAKAAELFDLMEKFGGYGFNKSHSAAYALI 773

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             +QTA++K HYP+E++AA MT +M N++ + KF  + R   I ++PP VN     F V  
Sbjct: 774  CFQTAYLKAHYPLEYMAALMTSDMSNIDSVVKFIDECRNHEINVLPPDVNESESVFTVAP 833

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I + LAA+KG+G+     I+E    + PF S+ DFC RV+  K+N+RVLE+L+  GA 
Sbjct: 834  AAIRFGLAAVKGIGSAAIDSIVEIRSQEGPFTSIYDFCERVNLTKVNKRVLEALIKCGAF 893

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---ITLEKFSVENS 948
            D  G  R Q++  L++   +   +++ + +   ++FA  +G  +      ++      + 
Sbjct: 894  DSTGSKRSQMMAVLEDALDHGNRIQREKADAQMDLFADTEGGEALPLSVPSMPDIPELDD 953

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
            +     E+  LGFY +GHPLD Y+ +++K      E  V T  G ++R+   +   +  K
Sbjct: 954  NDLLAMEKETLGFYITGHPLDRYEEMIKKFANVNSETLVETPEGQSVRMGGALRPLKILK 1013

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T+KG  + +    +     E   FP
Sbjct: 1014 TKKGDMMAFAALEDKKGSVEVVIFP 1038


>gi|170748452|ref|YP_001754712.1| DNA polymerase III, alpha subunit [Methylobacterium radiotolerans JCM
            2831]
 gi|170654974|gb|ACB24029.1| DNA polymerase III, alpha subunit [Methylobacterium radiotolerans JCM
            2831]
          Length = 1172

 Score = 1080 bits (2794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 525/1056 (49%), Positives = 713/1056 (67%), Gaps = 38/1056 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL VHSSYSLLEGAL + +++    AD+QPA+A+TDTNNLF ALEFS+KA   G
Sbjct: 6    KEVGFVHLHVHSSYSLLEGALKVGSLIKAAVADRQPALALTDTNNLFGALEFSEKAAGEG 65

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +QPI G QL +  +      +  +   PT   IVLL     GY  L+ L SR Y      
Sbjct: 66   VQPIAGVQLSVAFE----AADPHQRQAPTSHGIVLLAQDETGYANLLRLASRAYFDTALG 121

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
            ++ R+    L    +EGLI+LTGG +GP+D AF     ++A  RL   K+ F  DRLYV 
Sbjct: 122  EAPRLDAGALA-GASEGLIVLTGGMAGPLDAAFRAGRPELALNRLKRLKETFGEDRLYVE 180

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +QRH   +  R E+ ++ LA  H L +VATN   F   +DY+AHD L+A+A   +VS   
Sbjct: 181  IQRHGLPEEGRIETALLDLAGRHGLGIVATNEPFFAKPDDYDAHDALLAIAEGRLVSDDR 240

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF------IEK 298
            R R+TP H  K R+EM  +F DLP+AL+ TVEIA RC+   +   PILP F         
Sbjct: 241  RRRLTPTHAFKTRAEMAELFRDLPDALQATVEIAMRCAVRARTRKPILPNFGAVAAGETP 300

Query: 299  ECDDIQKE------------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               D   E            E  ELR +A AGLE+RL Q   A G+  +DYR+RL FEL+
Sbjct: 301  PMADALAEASDAGAQAVSADEPTELRRQAEAGLELRLKQHGTAPGFSEEDYRKRLAFELD 360

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI +MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFER
Sbjct: 361  VIVKMKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFER 420

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPDFDIDFC + R+ VI+YVQ +YG  +V QIITFG+L A+  LRDVGR L+
Sbjct: 421  FLNPERVSMPDFDIDFCVEGRERVIKYVQQRYGEGQVGQIITFGTLLARGVLRDVGRVLE 480

Query: 467  MPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            MPY QVD+L KL+P +PA+PV+L QAI  + + ++A   +P V RL++I++KLEGL+RHA
Sbjct: 481  MPYGQVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAMEEEPVVGRLIDIAKKLEGLHRHA 540

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            STHAAG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+  
Sbjct: 541  STHAAGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRCC 600

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D L QRG+ +DL+ +P DD  TY  +    T+G+FQ+ES+GMR+AL  MQ D +EDIIA
Sbjct: 601  TDLLKQRGIHIDLASLPLDDPNTYGPMGRGETVGVFQVESAGMRKALCEMQADRLEDIIA 660

Query: 646  LVSLYRPGPIDNIVVYNNRKNGK----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            LV+LYRPGP+ NI VY  RK G+    E      P ++PMLKET G+I+YQEQVM+IA++
Sbjct: 661  LVALYRPGPMANIPVYCERKLGRDAGNEASWYPDPKLEPMLKETFGIIVYQEQVMEIAKV 720

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            L+GYSL EAD+LRRAMGKKI+ EMD Q++RF+ G ++ G++K  A  IF+LLAKFADYGF
Sbjct: 721  LAGYSLGEADMLRRAMGKKIRAEMDAQRDRFLKGCTERGLTKAKANEIFDLLAKFADYGF 780

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NKSHAAAYA+++YQTA++K ++PVEFLAA+MTL++DN +K+ +F QDA++  I + PPS+
Sbjct: 781  NKSHAAAYALLTYQTAYLKANFPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPSI 840

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
            NT    F+V D +I+Y+LAAIKGVG    R ++EA  D+PF  L     R++ + +N+R 
Sbjct: 841  NTSGEVFEVRDGKIFYALAAIKGVGREAVRALVEARGDRPFKDLACLARRLNPRMINKRT 900

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL- 940
            LESLV AGALDC    R +   +++ I K A    +  T    ++F    G  +D ++L 
Sbjct: 901  LESLVQAGALDCIEPDRARAFAAVEPIMKLAASAVEAETAGVTDMFG---GVVADDVSLR 957

Query: 941  -EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI---R 996
                 +   +   + E   +GF+ SGHPLD Y  +L K+ ++ + +    +R       R
Sbjct: 958  IPPHEIWPMADTLKREYAAIGFFISGHPLDEYGDLLDKLRVQSWTDFCRAVRAGTSSVGR 1017

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +AA V+ + +++T+ G+++G VT S+    +EA  F
Sbjct: 1018 VAASVLDRAERRTKTGNKMGIVTLSDRTAHFEAIIF 1053


>gi|253580959|ref|ZP_04858221.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847801|gb|EES75769.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1155

 Score = 1080 bits (2794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1046 (35%), Positives = 576/1046 (55%), Gaps = 41/1046 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F + A A GI PI
Sbjct: 3    FTHLHVHTEYSLLDGSNKIKEYVARVKELGMDSAAITDHGVMYGVIDFYRAARAEGINPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +          +  +       +VLL    +GY  L+++VS+ +         R
Sbjct: 63   LGCEVYVAPGSRFDR--EAGSGEDRYYHLVLLAENNQGYANLMKIVSKGFTEG-FYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            + L+ L+E   EG+I L+   +G + R       + A+   L ++ +F     ++ LQ H
Sbjct: 120  VDLAVLKEYH-EGIIALSACLAGEVARYLQRGMYEDAKAAALRYQDIFGKGNFFLELQDH 178

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 R    +++++     + LVATN+  +   ED + HD+L+ +  +  ++ +DR R 
Sbjct: 179  GIPAQRLVNQELLRMHEETGIDLVATNDVHYTRAEDADPHDILLCLQTNKKLADEDRMRY 238

Query: 249  TPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                Y  K+  EM  +F    EALENT +IA+RC   ++     LPRF   +        
Sbjct: 239  EGGQYYVKSPEEMAELFPYALEALENTHKIAQRCHVEIEFGVTKLPRFDVPDG----LTS 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L      GLE R            ++ + RL++EL+ I  M +  YFLIV DFI++A
Sbjct: 295  WEYLNKLCFEGLEERYQP-------VTEELKARLNYELSTIKNMGYVDYFLIVWDFIKYA 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            + ++I VGPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D+DFC +RR
Sbjct: 348  RDHDIMVGPGRGSAAGSLVAYTLGITQLDPIRYDLLFERFLNPERVSMPDIDVDFCFERR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV+ KYG + V QI+TFG+L A+  +RDVGR L MPY+QVD + K+IP +    +
Sbjct: 408  QEVIEYVRRKYGDDCVVQIVTFGTLAARGVIRDVGRVLDMPYAQVDSIAKMIPQELNITI 467

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   ++A      +  L++++++LEGL RH S HAAG+VI  + +S+ VP+ R
Sbjct: 468  D-KALTMNPELKKAYEEQDEIHYLIDMARRLEGLPRHTSMHAAGVVISQKDVSEYVPLSR 526

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606
                   VTQF M  +E+ GL+K DFLGL+TLT++Q ++  + +  GV +D+  I +DD 
Sbjct: 527  AS-DGSIVTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVKLIQKDAGVTLDMQKINYDDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +    L T  + G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   KN
Sbjct: 586  KVLDSLGTGRSDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPQYIRGKN 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              + I    P ++P+LK T G I+YQEQVMQI + L+GY+L  +D++RRAM KK    M+
Sbjct: 646  RPDTIRYDCPQLEPILKPTYGCIVYQEQVMQIVRNLAGYTLGRSDLVRRAMSKKKASVME 705

Query: 727  KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+++ F+         G   NGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTA+
Sbjct: 706  KERQNFVYGNEAEGVPGCIANGIDEATANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTAY 765

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPVEF+AA MT  +D   K+ ++    RQ  I+I+PP VN     F V +  I Y 
Sbjct: 766  LKYYYPVEFMAALMTSVIDFPNKVAEYILVCRQMGIKILPPDVNCGMYGFSVDNGAIRYG 825

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L+AIK VG      ++ E   +  + SL+DF  R +S ++N+R +E+ + AGALDC   +
Sbjct: 826  LSAIKSVGRPVIESLVREREENGQYRSLKDFMER-NSPQMNKRAVENFIKAGALDCLDGN 884

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFENE 955
            R Q +     I       +KN      ++F    E+     +I +              E
Sbjct: 885  RRQKMLVYQKISDSISQDKKNSLAGQMSLFDLVSEEDKKEFEIRMPDVEEFGKEELLGYE 944

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEE--------SVATIRGNNIRLAAMVVSKQQK 1007
            + VLG Y SGHPL+ Y+ ++ K       +            + G  + +  M+  K  K
Sbjct: 945  KEVLGIYLSGHPLENYRGMMEKTISAKTSDFQQDEETNLPKVMDGQKVIIGGMITDKTIK 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+    + ++T  +     E   FP
Sbjct: 1005 YTKNNKVMAFLTVEDLVGTVEVVVFP 1030


>gi|308068343|ref|YP_003869948.1| DNA polymerase III alpha subunit [Paenibacillus polymyxa E681]
 gi|305857622|gb|ADM69410.1| DNA polymerase III alpha subunit [Paenibacillus polymyxa E681]
          Length = 1225

 Score = 1080 bits (2794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1030 (38%), Positives = 600/1030 (58%), Gaps = 18/1030 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL+GA     ++ + +A    A+A+TD   ++ A+ F +     GI+P
Sbjct: 3    SFVHLHVHSEYSLLDGAARTAELVKQASAYGMKALALTDHGVMYGAIPFYRACVENGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  +      +   +G      +  ++LL     GYQ L++L S  +L        
Sbjct: 63   IIGCEAYMTAGSRKE---RGSRKDQPIYHLILLAKNKTGYQNLMKLCSIGHLEG-FHYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI +  L     EG+I L+    G + +         A +    ++ +FGD  Y+ LQ H
Sbjct: 119  RIDMEALA-AHHEGIICLSACLGGEVPQHLLHGREAEARRAAERYRNIFGDDFYLELQDH 177

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ R    ++ LA   ++PLVATN+  +L+E D +  DVL+ +     V  ++R R+
Sbjct: 178  GLSEQKRVNPLLIALAKELDIPLVATNDVHYLTEPDADVQDVLICIGTGKTVDDEERLRI 237

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQKE 306
                 +LK++ +M  +F  + EA+ NTV IA +C   L+    ILP +    E       
Sbjct: 238  PTRQLFLKSQEDMARLFPHVAEAIANTVRIAEKCELELEFGQSILPEYRPLPEGM----T 293

Query: 307  EENELRNKAVAGLEVRLAQGAI-AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + LRN  V GLE R    +   +    +   QRL +ELN I  M FS YFLIV DFI 
Sbjct: 294  SSSYLRNLCVQGLERRYGSDSRWEQPEERERLNQRLSYELNTIDSMGFSDYFLIVWDFIA 353

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A K+ I  GPGRGS AGS+ AY L IT++DP++++LLFERFLNP+R+SMPD DIDF  +
Sbjct: 354  FAHKHKIATGPGRGSSAGSLVAYVLNITNVDPMKYNLLFERFLNPERISMPDIDIDFSDE 413

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI YV  KYG+E VAQIITFG+L A+AA+RDVGR L +PY +VD+  KLIP     
Sbjct: 414  RRDEVIDYVVQKYGNEHVAQIITFGTLAARAAVRDVGRVLNVPYGEVDKAAKLIPAQLGI 473

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +   A+      +      P    LL+++ K+EG+ RHASTHAAG+VI   PL+  VP+
Sbjct: 474  NIR-HALEITPELKTLYETKPKTRELLDMAIKVEGMPRHASTHAAGVVISRTPLTDAVPL 532

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
              +    +P+TQ++M+ +E+ GL+K DFLGL+TL+++++ + ++A+      D S IP +
Sbjct: 533  Q-EGSEGVPLTQYSMENLERIGLLKMDFLGLRTLSIIERCIHWIAEDHGETPDFSRIPDN 591

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY LL    T G+FQLES+G+R+ L+ ++P   EDII++++LYRPGP+  I  +   
Sbjct: 592  DPHTYDLLGKGDTGGVFQLESAGVRRVLKDLKPSVFEDIISVLALYRPGPMGFIPNFIQA 651

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+ +I   HP ++P+LK+T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E 
Sbjct: 652  KHGQIEISYPHPDLEPILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREV 711

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D ++  F+ G+ K G ++  A  +++++ +FADYGF ++HAAAY V+++QTA++K HYP
Sbjct: 712  LDLERGHFVEGSIKQGYTEEEAGRVYDMIVRFADYGFPRAHAAAYGVLAFQTAYLKAHYP 771

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIK 843
            V+F+A+ +T  M +  K+ ++  + R+ +I ++PP VN   V F  +    I + LAAIK
Sbjct: 772  VQFMASMLTAVMGSHRKVAEYVVECRRMDITVLPPDVNESGVLFTPLQQGGIRFGLAAIK 831

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
             VGT     I+    ++ FDSL DFC RVD +  N+RV+ESL+ AGA D     R QLL 
Sbjct: 832  NVGTQAMESILAVRKERLFDSLLDFCRRVDLRVCNKRVIESLIQAGAFDSLTGHRAQLLA 891

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             LD     A    K R +   ++F   +    D I        ++S + E E+ +LG Y 
Sbjct: 892  MLDETVDAAVKWRKERDDLQIDMFGFVEMPNWD-IEYPNVPQFSASQQLELERELLGLYL 950

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            SGHPLD ++ +L         E         +  A MVVS +   T++G  + ++   + 
Sbjct: 951  SGHPLDDFESLLESSEADRLMELGDVPDETVVVTAGMVVSLKTITTKQGKAMAFIELEDQ 1010

Query: 1024 AKEYEANFFP 1033
             +  E   FP
Sbjct: 1011 IERCEVVLFP 1020


>gi|323485857|ref|ZP_08091192.1| hypothetical protein HMPREF9474_02943 [Clostridium symbiosum
            WAL-14163]
 gi|323400845|gb|EGA93208.1| hypothetical protein HMPREF9474_02943 [Clostridium symbiosum
            WAL-14163]
          Length = 1176

 Score = 1080 bits (2794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1051 (36%), Positives = 573/1051 (54%), Gaps = 40/1051 (3%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E+  +F HL VH+ YSLL+ +  +  +  +       ++AITD   ++  ++F + A  A
Sbjct: 14   EQGVAFTHLHVHTEYSLLDASSKIKELTARAKELGMDSLAITDHGVMYGVIDFYRAAKEA 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIGC++ +         N           ++LL     GYQ L+++VS+ ++    
Sbjct: 74   GIKPIIGCEIYVAPGSRFDRENVNGE--DRYYHLILLAENNVGYQNLMKIVSKGFVEG-F 130

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYV 184
                R+    L+E  +EG+I L+    G + R       + A K  L ++++FG+   ++
Sbjct: 131  YYKPRVDFEVLREY-SEGIISLSACLGGEVQRYLTRGMYEEACKSALRYQEIFGEGNFFL 189

Query: 185  NLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ H    +   +Q +++++    +PL ATN+  ++ +ED E+HD+L+ +     V+ +
Sbjct: 190  ELQDHGIPAQKTVNQGLLRMSQELGIPLTATNDCHYIYKEDVESHDILLCIQTGKKVADE 249

Query: 244  DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +R R      YLK+  EM  IF    +AL+NT +IA RC+  ++     LP+F   E   
Sbjct: 250  NRMRYEGGQFYLKSEEEMREIFPYAADALDNTHKIAERCNVDIEFGVTKLPQFDVPEG-- 307

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                    LR     G                   ++RL++EL VI  M +  YFLIV D
Sbjct: 308  --YTSWEYLRKLCFDGFNKHYPDDDGT-------LKERLEYELGVIQSMGYVDYFLIVWD 358

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI +AK ++I VGPGRGS AGS+ AY+L ITDIDP+R+ LLFERFLNP+R+SMPD DIDF
Sbjct: 359  FIHFAKSHDIMVGPGRGSAAGSIVAYSLGITDIDPIRYQLLFERFLNPERVSMPDIDIDF 418

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV +KYG +RV QI+TFG+L AK  +RDVGR L MPY++ D + K+IP D
Sbjct: 419  CFERRQEVIDYVVSKYGKDRVVQIVTFGTLAAKGVVRDVGRVLDMPYAKCDSIAKMIPGD 478

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+      R A   D  V  L+++S++LEGL RH S HAAG+VI    + + 
Sbjct: 479  LGMTLD-KALKASPDLRSAYQEDDEVKYLIDMSRRLEGLPRHTSMHAAGVVISKASVDEY 537

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLI 601
            VP+ R        TQF M  +E+ GL+K DFLGL+TLT++Q ++    +   K +DL  I
Sbjct: 538  VPLSRAA-DGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVRLAEKTCKKTIDLYNI 596

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             ++D      + T    G+FQLESSGM+  ++ ++P+ +EDIIA +SLYRPGP+D I  Y
Sbjct: 597  DYNDKNVLDAIGTGKNDGVFQLESSGMKSFMKELKPENLEDIIAGISLYRPGPMDFIPRY 656

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               KN K+ I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D++RRAM KK 
Sbjct: 657  LKGKNDKKSITYECPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKK 716

Query: 722  KEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               M+K+++ F+         G   NGI +  A +I++ +  FA Y FNKSHAAAYAV+S
Sbjct: 717  GSVMEKERQNFVYGNGEEGVKGCIANGIDEKTANHIYDEMIDFAKYAFNKSHAAAYAVVS 776

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K +YPVEF+AA MT   DNV K+ ++    RQ  ++I+PP +N     F V   
Sbjct: 777  YQTAYLKYYYPVEFMAALMTSVKDNVTKVSEYIMACRQMGMKIVPPDINEGEGGFSVSGG 836

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L+AIK +G +    I+ E      F +LEDF  R+ SK++N+R LES + +GA+D
Sbjct: 837  SIRYGLSAIKSIGQSVVEEIVKERRERGEFKTLEDFVDRMSSKEVNKRTLESFIKSGAMD 896

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSV 950
                +R Q       +       +KN       +F        +  ++T           
Sbjct: 897  SLPGTRKQKFLVSAQLLDQKNKEKKNSMEGQMTMFDFVAEEEKENFQVTFPNVGEYTKDE 956

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVV 1002
                E+ +LG Y SGHP++ Y  +  K       + +            G  + +  M+ 
Sbjct: 957  LLYFEKEMLGVYISGHPMEAYIGLWEKNVTARTSDFIVDEETGEAQVRDGAIVTIGGMLT 1016

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +K  K TR    + +VT  +     E   FP
Sbjct: 1017 AKTVKTTRTNKMMAFVTIEDLYGSVEVLVFP 1047


>gi|260439212|ref|ZP_05793028.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
 gi|292808227|gb|EFF67432.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
          Length = 1155

 Score = 1080 bits (2793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1047 (37%), Positives = 589/1047 (56%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +  I  +       ++AITD   ++  ++F + A   GI+P
Sbjct: 2    SFTHLHVHTEYSLLDGSGKIEEITARAKELGMDSLAITDHGVMYGVIDFYRAARNVGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +      +   +          ++LL     GY  L+++VS+ ++ D      
Sbjct: 62   ILGCEVYVAPGSRFE--KEPGISDDRYYHLILLAENNTGYANLMKIVSKGFV-DGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L+E  +EG+I L+   +G + +    N  + A K  L ++ +F     ++ LQ 
Sbjct: 119  RVDYEVLEEY-SEGIICLSACLAGEVQKLLARNLYEEACKAALKYEAIFGKGNYFLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +      +V+++    + LVATN+  +  E+D EAHD+L+ +     V+ +DR R
Sbjct: 178  HGIPTQKLVNRLLVRMSRELNIELVATNDVHYTYEDDAEAHDILLCIQTGKKVNDEDRMR 237

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +YLK+  EM  +FS  P+AL+NT +IA+RC+  ++     LP++   E       
Sbjct: 238  YEGGQYYLKSEEEMRELFSYAPQALDNTHKIAKRCNVEIEFGVTKLPKYDVPEGF----T 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+ L +  + GL  R        G  A +  +RLD+EL+VI +M +  YFLIV DFI +
Sbjct: 294  SESYLEHLCMEGLVKRY-------GERAAELEERLDYELSVIKKMGYVDYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N I VGPGRGS AGS+ AY L ITDIDP++++L+FERFLNP+R+SMPD DIDFC +R
Sbjct: 347  AKSNGIAVGPGRGSAAGSIVAYCLEITDIDPIKYNLIFERFLNPERVSMPDIDIDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG+L AK  ++DVGR L MPYS  D L K+IPN+    
Sbjct: 407  RPEVIDYVMKKYGKDRVVQIVTFGTLAAKGVIKDVGRVLDMPYSVTDSLSKMIPNEIGMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  ++ FR     +P V  L++I ++LEGL RH S HAAG+VIG RPL + VP+ 
Sbjct: 467  LD-KALNANNEFRTRYETEPEVKYLIDICKRLEGLPRHTSMHAAGVVIGSRPLDEFVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            R        TQF M  IE+ GL+K DFLGL+TLT++Q +   + +R  V  D+S I ++D
Sbjct: 526  RAS-DGTITTQFTMTTIEELGLLKMDFLGLRTLTVIQDAERLINKRGDVSFDISKIDYND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                 ++    T G+FQLES+GM+  ++ ++PD IED+IA +SLYRPGP+D I  Y   K
Sbjct: 585  RNVLEMIGQGKTEGVFQLESTGMKNFMKELKPDGIEDLIAGISLYRPGPMDFIPQYIAGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N K  I      ++P+LKET G I+YQEQVMQI + L+GY+L  +D++RRAM KK +  M
Sbjct: 645  NDKTSITYACKELEPILKETYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKQAVM 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K++  FI         G    GI +++A +I++ +  FA Y FNKSHAA YA ++++TA
Sbjct: 705  EKERHNFIYGNEEENVAGCIAKGIDESVASHIYDTMMDFAKYAFNKSHAACYAFVAFRTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-Y 836
            ++K +YPVEF+AA MT  +DN  K+ ++    R   I+I+PP +N     F    +    
Sbjct: 765  YLKYYYPVEFMAALMTSVLDNTTKVAQYIVTCRNMGIEILPPDINEGEGTFTAASDSSIR 824

Query: 837  YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y L+AIK +G      I+E  A+   F  ++DF SR+  K++N+R +ES + +GA D FG
Sbjct: 825  YGLSAIKSLGRPVIEAIVEERANGGRFKDIKDFISRLSGKEVNKRTVESFIKSGAFDSFG 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-SDKITLEKFSVENSSVRFEN 954
             +R Q++    +I        K   +   ++F         D+IT+        S     
Sbjct: 885  LTRKQMMLVYGDIMDKVSSERKTEISGQMSLFDMFAPDEKPDEITIPDVGEYTKSELLAM 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPLD Y+ +L K       + +               + +  M+     
Sbjct: 945  EKEVLGIYASGHPLDEYEGLLNKNVTCTTADFIPDDETGMPKVNDDERVIVGGMIAECSV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K TR+G  + ++   +     E   FP
Sbjct: 1005 KNTRQGQNMAFLKLEDRVGTVEVIVFP 1031


>gi|270264805|ref|ZP_06193069.1| DNA polymerase III, alpha subunit [Serratia odorifera 4Rx13]
 gi|270041103|gb|EFA14203.1| DNA polymerase III, alpha subunit [Serratia odorifera 4Rx13]
          Length = 1183

 Score = 1080 bits (2793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1047 (39%), Positives = 608/1047 (58%), Gaps = 40/1047 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 25   PRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGAGIK 84

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L +  +GYQ L  L+SR Y    G   
Sbjct: 85   PIIGADFHV----------QSEVLGDELAQLTVLAANNDGYQNLTLLISRAYQRGYGAAG 134

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+G   G + +     + Q  ++ L  +++ F D  Y+ L R
Sbjct: 135  PIIDRDWLIE-HREGLILLSGARQGDVGKFLLRGNQQQVDQCLDFYQQYFPDSYYLELIR 193

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  FL E+D++AH++ +A+     +    RP 
Sbjct: 194  TGRPDEENYLHAAVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPR 253

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 254  NYSTQQYMRSADEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPTGDM-----T 308

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 309  TEDFLVLKSKEGLEERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEF 368

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 369  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 428

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 429  MEKRDLVIEHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 488

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 489  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 547

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        +D+
Sbjct: 548  PLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKSGLEPIDI 607

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 608  AAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 667

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 668  MVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 727

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   GI   ++V IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 728  MLRRAMGKKNPVEMAKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKSHSAAYAL 787

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 788  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYHFHVN 847

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            D     Y + AIKGVG      I+EA        F  L D C+R D KKLNRR+LE L+ 
Sbjct: 848  DEGEIVYGIGAIKGVGEGPIEAILEARNSGEQGYFKDLFDLCARSDVKKLNRRILEKLIM 907

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 908  SGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANVPRW 967

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP+  Y   + +  G +  ++   T RG       +V++ +
Sbjct: 968  QEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIASR 1027

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1028 VMVTKRGNRIGICTLDDRSGRLEVMLF 1054


>gi|254520595|ref|ZP_05132651.1| DNA polymerase III DnaE [Clostridium sp. 7_2_43FAA]
 gi|226914344|gb|EEH99545.1| DNA polymerase III DnaE [Clostridium sp. 7_2_43FAA]
          Length = 1187

 Score = 1080 bits (2792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1075 (35%), Positives = 593/1075 (55%), Gaps = 61/1075 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  F HL +H+ YSLL+G+  +  I+ +       +IAITD   ++  + F ++A   GI
Sbjct: 5    SKKFTHLHLHTEYSLLDGSGKIKKIISRAKELGMDSIAITDHGVMYGCVSFYKEAIEQGI 64

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+GC++ +  +    M  +      +   +VLLV   EGY+ L+E+VS+  +      
Sbjct: 65   KPILGCEIYVAAKS---MDIKINDKENSTHHLVLLVKNEEGYKNLMEIVSQASIRG-FYY 120

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+   +L+   ++GLI L+    G +      ++ + A++  L +K +F D  Y+ +Q
Sbjct: 121  KPRVDHDFLRS-HSDGLIALSACLGGEVQSWHLKDNYEKAKEVALLYKDIFKDGFYLEIQ 179

Query: 188  RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++ +  +  ++L+    +PL+ATN+  ++++ D E+HDVLM +     +   +R 
Sbjct: 180  NHGMDEQRKVIEGNIKLSKETGIPLIATNDVHYINQRDSESHDVLMCIQTGKTIDDPNRR 239

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R   D  YLK+  +M  +FS +PEALENT++IA  C+F  + H   LP+F   E      
Sbjct: 240  RYPSDQFYLKSPEQMWDMFSHIPEALENTIKIAEECNFDYEFHVSKLPKFPVPEGI---- 295

Query: 306  EEENELRNKAVAGLEVRLA------------QGAIAKGYHAQD---YRQRLDFELNVIAR 350
            E    L+N   +GL  R              +  +      ++   Y +RL++EL+VI +
Sbjct: 296  EPYEYLKNVCYSGLIERYEVFKEFLNRPLNVEELVDYYKTNEEACGYIERLEYELSVIKQ 355

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M +  YFLI  DFI+++ +N IP GPGRGS AGS+ AY L IT IDP+++SLLFERFLNP
Sbjct: 356  MGYVDYFLITWDFIRFSNENGIPTGPGRGSAAGSIVAYTLGITKIDPIKYSLLFERFLNP 415

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPD D DFC +RR EVI YV  KYG   V+QIITFG++  +A +RDVGRA+   Y+
Sbjct: 416  ERVSMPDIDSDFCYERRQEVIDYVVEKYGINNVSQIITFGTMAPRACIRDVGRAMNYSYA 475

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            +VDR+ K+IP      +  +A+  +   + A   +  V  L+++S+ LEGL RH+STHAA
Sbjct: 476  EVDRIAKMIPTMLGITID-KALEINPELKAAYNNEERVKALIDVSKDLEGLPRHSSTHAA 534

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VI  +PL + VP+ R    D  V QF+M  +E+ GL+K DFLGL+TLT++  ++  + 
Sbjct: 535  GVVIASKPLVEYVPLQR--NEDSIVAQFDMTTLEELGLLKMDFLGLRTLTVMNDAVKMIK 592

Query: 591  QRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            +   + ++L  I F+D + Y+++    T G+FQLES GM   ++ ++PDC+EDIIA +SL
Sbjct: 593  ENQGIDINLDKINFEDKDVYNMIGEGKTAGVFQLESPGMTSFMKELKPDCLEDIIAGISL 652

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP+  I  Y   K   +K+    P ++ +L  T GV++YQEQVM+I + L+GYS+  
Sbjct: 653  YRPGPMGEIPRYVECKQNPDKVEYEVPELEDILNVTYGVMVYQEQVMEIVRKLAGYSMGR 712

Query: 710  ADVLRRAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFA 757
            +D++RRAM KK  + M+++++ FI             G  +NGIS+  A  IF+ +  FA
Sbjct: 713  SDLVRRAMSKKKHKVMEEERKNFIYGVVDDNGNIEVPGCKRNGISEEAANKIFDQMMDFA 772

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y FNKSHAAAYAVI YQTA++  +YPVE +AA +   M   EK+  +   A    IQ++
Sbjct: 773  SYAFNKSHAAAYAVIGYQTAYLMKYYPVETIAAMLNSVMGTSEKVAHYINFAESLGIQVL 832

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876
            PP +N     F V  ++I + LAAIK VG      I+E+  +   F+SL DF +++D   
Sbjct: 833  PPDINESYSKFTVKGDKIIFGLAAIKNVGYNVVETIVESRNNKGEFESLMDFINKIDLSS 892

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            +N+R +ESL+ AGALDCF   R +LL   + +        K   +   ++F  E+     
Sbjct: 893  VNKRAIESLIKAGALDCFDVFRSKLLAVYEKLMDSVSSERKRNIDGQISLFGMEEEIELP 952

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE------------ 984
            +I                E+ + G Y SGHPLD Y   L+       +            
Sbjct: 953  EINYPNIKEFAKKNILAMEKEMTGLYLSGHPLDEYADSLKVQTTTNIDKVYKSYEIISDT 1012

Query: 985  ----ESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                +    I      + L  ++    QK TR  + + ++   +     E   FP
Sbjct: 1013 FNQTDLPEDIIHDEERVILGGIIAESNQKITRSNTMMAFLKLEDLTGIIEVIVFP 1067


>gi|170723228|ref|YP_001750916.1| DNA polymerase III subunit alpha [Pseudomonas putida W619]
 gi|169761231|gb|ACA74547.1| DNA polymerase III, alpha subunit [Pseudomonas putida W619]
          Length = 1174

 Score = 1079 bits (2791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1063 (39%), Positives = 601/1063 (56%), Gaps = 56/1063 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL+VHS +SL++G + +  +   +A    PA+AITD +N+ + ++F + A  AGI
Sbjct: 2    SVPFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCALVKFYKAAMGAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G  L +           G  P   +  I  L    +GY+ L EL+SR +   Q   
Sbjct: 62   KPICGADLWLA----------GADPEAPLSRICFLAMNPKGYRNLTELISRGWTDGQRNG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             V +   W+    +EGLI L+ G  G I  A     +  AE  L  +  +F +R YV +Q
Sbjct: 112  LVILQREWIA-PASEGLIALSAGKEGDIGMALMAGRTTEAEALLHDWMGMFPERFYVEVQ 170

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R +R  D       V LA     PLVATN+  F+ + D++AH+  + +     +    RP
Sbjct: 171  RTNRVGDEEYVHAAVALADKVGAPLVATNDVRFIKQSDFDAHESRVCIGEGWTLDDPRRP 230

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               +   YLK+  EM  +FSDLP+A+ NTVEIA+RC+  +Q+    LP F       I  
Sbjct: 231  RMYSDQQYLKSADEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI-- 288

Query: 306  EEENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              ++ LR+ +  GLE RLA     +         Q Y  RL FEL++I +M F GYFLIV
Sbjct: 289  --DDYLRHVSHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIV 346

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+
Sbjct: 347  MDFIKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDV 406

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD VI YV + YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP
Sbjct: 407  DFCMDGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP 466

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +    +  +A   +   R+    D     + +++ KLEG+ R    HA G+VI    L+
Sbjct: 467  FEVGMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLT 525

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVK 595
               P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ +           
Sbjct: 526  DFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETINREQAKNNLPD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            V++  IP DD +TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+
Sbjct: 586  VNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPL 645

Query: 656  DNIVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 646  QSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F
Sbjct: 766  YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLIEEVRSMKLRLDAPDVNASEFKF 825

Query: 829  KVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V  D RI Y L AIKGVG      I+EA     PF  L DFC RVD K++N+R L++L+
Sbjct: 826  TVNDDGRIIYGLGAIKGVGEGPVEAIVEARDQGGPFKDLFDFCERVDLKRVNKRTLDALI 885

Query: 887  FAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE- 930
             +GALD  G                +R  LL +L+   K A+   +   + H ++F    
Sbjct: 886  RSGALDRLGPHFHDEIKAYHASIDINRATLLSALEEAIKAAEQTARTADSGHVDLFGGLF 945

Query: 931  -KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
             +          K        R + E+  LG Y +GHP+D Y+  +R+   +   +   +
Sbjct: 946  VEEDSDVYANHRKVRELTLKERLKGEKDTLGVYLTGHPIDEYEGEIRRFARQRIIDLKPS 1005

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   +A M+++ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1006 RETQ--TIAGMIIAMRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046


>gi|257464972|ref|ZP_05629343.1| DNA polymerase III subunit alpha [Actinobacillus minor 202]
 gi|257450632|gb|EEV24675.1| DNA polymerase III subunit alpha [Actinobacillus minor 202]
          Length = 1157

 Score = 1079 bits (2791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1045 (40%), Positives = 611/1045 (58%), Gaps = 38/1045 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SP FVHL+VHS +S++ G   + +++   AAD   A+A+TD  N    ++F  ++ A+GI
Sbjct: 2    SPRFVHLKVHSDFSMINGLAKVKSLVKAAAADNMVAMALTDFTNFCGLVKFYGESLASGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG            +  + ++    V  + LL    +GY  +  L+S  Y       
Sbjct: 62   KPIIGA----------DILVRSESESEEVYELTLLAKNNQGYHNITLLLSMAYQQGYV-D 110

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +  +WL E   EG+I+L+GG SG + +A    + + AE     +++ F +  Y ++ 
Sbjct: 111  LPLVEKAWLAEY-NEGIIVLSGGRSGDVGKALLKENVKEAENLTAFYQQYFPNHFYFSVC 169

Query: 188  RHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R    D  R  S +V  A    +P+VA N+ +FL E+D++AH++ +A+  S  +    RP
Sbjct: 170  RTGRADEERYISAIVPFANQKGIPIVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRP 229

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  +P  Y ++  EM  +F+DLP ALENT+EIA+RCS  +++    LP F   +      
Sbjct: 230  KKYSPQQYFRSEEEMCRLFADLPSALENTIEIAKRCSVTVRLGEYFLPNFPTGDL----- 284

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E  L  K+  GLE RLA        +    + Y +RL  EL+VI +M F GYFLIV +
Sbjct: 285  TTEEFLIKKSEEGLEERLAFLFPDPEERASKREVYDKRLQVELDVINQMGFPGYFLIVME 344

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 345  FIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 404

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLIP D
Sbjct: 405  CMDGRDRVIDHVAETYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPD 464

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A A + +  E   +D  V  L+++++KLEG+ R+A  HA G+VI    ++  
Sbjct: 465  PGMTLE-KAFAAEPKLPELYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 523

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVD 597
             P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ +  R        V 
Sbjct: 524  SPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINARLTAEGKEPVR 583

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP +D +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+++
Sbjct: 584  IESIPLNDKKSFDLLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLES 643

Query: 658  IV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +   + +RK+GKE++        H  + P+L+ T GVI+YQEQVMQIAQ L+GY+L  A
Sbjct: 644  GMVQNFIDRKHGKEEVSYPDAQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGA 703

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM  Q+E F  GA +  I   +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 704  DLLRRAMGKKKPEEMAAQREIFEKGAIEKNIDGELAMKIFDLVEKFAGYGFNKSHSAAYA 763

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+K HYP EF+AA M+ EMDN +KI     +     + ++PP +N+    F V
Sbjct: 764  LVSYQTLWLKAHYPAEFMAAVMSSEMDNTDKIVGLYDECINMGLTVVPPDINSGKHHFSV 823

Query: 831  GDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             +     Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR  ++L+ +
Sbjct: 824  NEKGEIVYGLGAIKGVGEGPIDAILEARQKDGIFKDLFDLTARVDLKKINRRTFDALIMS 883

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            G+LD  G  R  L+++L++  K +    K       ++F     T  + +         +
Sbjct: 884  GSLDKLGPHRAALMKNLEDALKASDQHTKMEALGQSDMFGVLTETPEEVQNAYANTPKWS 943

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              V  + E+  LG Y SGHP+  +   L         E   T RG  + +A +V+S +  
Sbjct: 944  EQVVLDGERATLGLYLSGHPIGRFLKELAHYAPVRLNELQPTYRGQMVTVAGIVMSYRVA 1003

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GSRIG  T  + + + +   F
Sbjct: 1004 VTKRGSRIGIATIEDRSGKLDITLF 1028


>gi|66044606|ref|YP_234447.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. syringae
            B728a]
 gi|63255313|gb|AAY36409.1| DNA polymerase III alpha subunit [Pseudomonas syringae pv. syringae
            B728a]
          Length = 1173

 Score = 1079 bits (2790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1060 (39%), Positives = 608/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173  NRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA               Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVD 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +         +D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F V
Sbjct: 768  LVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              D RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  SDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KG 932
            ALD  G                +R  LL +L+   + A+   ++R + H ++F     + 
Sbjct: 888  ALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFVEA 947

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  DADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 Q--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|15601899|ref|NP_244971.1| DNA polymerase III subunit alpha [Pasteurella multocida subsp.
            multocida str. Pm70]
 gi|14194670|sp|Q9CPK3|DPO3A_PASMU RecName: Full=DNA polymerase III subunit alpha
 gi|12720237|gb|AAK02118.1| DnaE [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 1159

 Score = 1079 bits (2790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1046 (39%), Positives = 601/1046 (57%), Gaps = 38/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S++ G   +  ++     +   A+ +TD  N    + F  +A +AG
Sbjct: 2    SEPRFVHLRVHSDFSMINGIAKVKPLIKACVDNHMVAMGLTDFTNFCGLVRFYGEALSAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG            +  + +        + LL     GY  +  L+S+ Y     +
Sbjct: 62   VKPIIGA----------DVLVRSELCGDEPFELTLLAKNNIGYHNITLLLSKAY-ERGYQ 110

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  +WL E   EG+I+L+GG +G + +      +   E  +  ++  F D  Y++L
Sbjct: 111  DLPYLDQAWLAE-HREGIIVLSGGHNGDVGKKLLKGHAAEIESAVAFYQDFFPDHFYLSL 169

Query: 187  QRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R   Y+  R   + + LA    LP+VATN+ LFL E+D+EAH++ +A+  S  +    R
Sbjct: 170  SRTGRYEEERYVSLALTLAEEKGLPVVATNDVLFLHEDDFEAHEIRVAIHDSYTLDDPKR 229

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  T   Y ++  EM  +F+D+P ALENT+ IA+RC+  +++    LP+F   +     
Sbjct: 230  PKLYTNQQYFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGEYFLPQFPTGDL---- 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  -STEDFLVKKSKEGLEERLKFLFPDEKVRQARRPEYDERLQVELDVINQMGFPGYFLIVM 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 345  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 405  FCMDGRDRVIDHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A A + + +    +D  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 465  DPGMTL-AKAFAAEPQLQAVYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPGLITD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R        V
Sbjct: 524  FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINTRLAKEGKPPV 583

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP++
Sbjct: 584  DIATIPLDDPASFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLE 643

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+G E +        H  + P+L+ T GVI+YQEQVMQIAQ L+GY+L  
Sbjct: 644  SGMVQNFIDRKHGNEVVAYPDPEYQHDSLKPILEPTYGVIVYQEQVMQIAQELAGYTLGG 703

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM  Q+E F  GA + G+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 704  ADLLRRAMGKKKPEEMAAQREIFEKGAIQKGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 763

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT EMDN +KI     +  +  +++ PP +NT    F 
Sbjct: 764  ALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVAPPDINTGKHHFS 823

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V     I Y + AIKGVG      ++ A      F  L D C+RVD KK+NRR  ESL+ 
Sbjct: 824  VNEYGEIVYGIGAIKGVGEGPIEALISAREQGGIFKDLFDLCARVDLKKINRRTFESLIL 883

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946
            +GA D  G  R  L ++L++  K +    K+      ++F     +  D +         
Sbjct: 884  SGAFDKLGPHRAALSKNLEDALKASDQHAKDAAMGQADMFGVLTESHEDVEKAYASTPRW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +  V  E E+  LG Y S HP+  Y   L        ++ V   RG    ++ ++VS + 
Sbjct: 944  SEKVILEGERETLGLYLSSHPISPYLKELAHYSATRLKDLVPNSRGQMSTVSGLLVSSRF 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+KG+R+G  T  + +   +   F
Sbjct: 1004 AVTKKGNRLGIATLDDRSGRLDITLF 1029


>gi|91792926|ref|YP_562577.1| DNA polymerase III subunit alpha [Shewanella denitrificans OS217]
 gi|91714928|gb|ABE54854.1| DNA polymerase III, alpha subunit [Shewanella denitrificans OS217]
          Length = 1159

 Score = 1079 bits (2790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1043 (39%), Positives = 605/1043 (58%), Gaps = 36/1043 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G   +  IL +       AIA+TD NN    ++F      AGI+
Sbjct: 4    PRFVHLRVHSDFSMTDGVAKVKPILAEAERQGMAAIALTDQNNFCGLVKFYGGCHNAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G    +          Q       + ++ ++     GYQ L +++S+ YL  Q    
Sbjct: 64   PIVGADFWM----------QVPGFDKELCALTIIAMDNHGYQNLTQIISQAYLRGQINGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            V I   WL     +G+++L+G   G + +A    +    +  +  ++  F  R ++ L R
Sbjct: 114  VVIDQDWLVTY-NQGILVLSGAKEGDVGKALLKGNLPQVDSLIQFYQTHFDGRYFLELIR 172

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D  R     V LA   +LP+VATN  +FL  +D+E+H++ +A++    ++   RP+
Sbjct: 173  TGRSDEERYLHMAVNLAKERDLPVVATNQVVFLKADDFESHEIRVAISDGYTLADPRRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              + + YL++  EM ++FSD+P AL N+VEIA+RC+  ++++   LP F   +       
Sbjct: 233  TYSAEQYLRSEEEMCALFSDIPSALSNSVEIAKRCNVTIRLYEYFLPNFPTGDL-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L   +  GLE RL         +     +Y +RL  EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVVVSEKGLEERLEFLFPDEQVRAQRRGEYDERLAIELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRRDEVI +V + YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP +P
Sbjct: 408  MDRRDEVIDHVADLYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPAEP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +   +E+   D  V  L+++ ++LEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAFEVEPALQESYDGDEDVKELIDMCRRLEGVTRNAGKHAGGVVIAPTKITDFS 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +  ++       +
Sbjct: 527  PLYCDAEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVQLQNGLDPIRI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD + + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587  EAIPLDDPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   +  RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIERKHGREEVSYPDAQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA  NGI   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRGTFKEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     F V 
Sbjct: 767  VSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFTVD 826

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                I Y + AIKGVG      I+EA  + PF  L DFC+RVD KKLN+R++E L+ AGA
Sbjct: 827  EAFNIVYGIGAIKGVGEGPVESILEARVNGPFTDLFDFCARVDLKKLNKRIIEKLICAGA 886

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSS 949
            LD  G  R  ++ +L      A    K       ++F        D K    +       
Sbjct: 887  LDSLGPHRASMMATLPQAISAAAQHAKAEAIGQHDMFGLLNSEPEDNKQQFVECMPWPDK 946

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
            +  E E+  LG Y +GHP++ Y   L++      ++   T RG   + A +VV+ +   T
Sbjct: 947  IWLEGERDTLGLYLTGHPINQYLKELKQYTSGRLKDVHPTERGKTAKAAGLVVATRVMLT 1006

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
            ++G+++G VT  + +   E   F
Sbjct: 1007 KRGAKMGLVTLDDKSARLEVMLF 1029


>gi|229588818|ref|YP_002870937.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens SBW25]
 gi|229360684|emb|CAY47542.1| DNA polymerase III alpha subunit [Pseudomonas fluorescens SBW25]
          Length = 1173

 Score = 1079 bits (2790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1060 (39%), Positives = 604/1060 (56%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  AGI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +  +D          P   +  I LL     GY+ L EL+SR ++  Q   S+
Sbjct: 64   ICGADLWLSNKD----------PDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ E   EGLIML+    G I  A    + Q AE     + ++F DR Y+ +QR 
Sbjct: 114  IIEREWVAE-ANEGLIMLSAAKEGEIGIALLGGNPQEAEVLAREWMQVFPDRFYLEIQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +R  D       V LA     PLVATN+  F+ +ED+EAH+  + +     +    R   
Sbjct: 173  NRPNDEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + + YLK+  EM  +FSDLPEALEN+VEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSEEQYLKSADEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRL-----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RL                Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLSVLLPKDTTEDYDAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + ++++KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVD 597
             P+Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +         +D
Sbjct: 528  SPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G + N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F V
Sbjct: 768  LVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTV 827

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  RI Y L AIKGVG      I EA  D PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  NDEGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            ALD  G                +R  LL +++   K A+   +   + H ++F       
Sbjct: 888  ALDRLGPYFHDEPKAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLFVEE 947

Query: 935  SDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               +     K        R + E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  DADVYGNHRKAKDLTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A M+++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 Q--TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045


>gi|154503521|ref|ZP_02040581.1| hypothetical protein RUMGNA_01345 [Ruminococcus gnavus ATCC 29149]
 gi|153795621|gb|EDN78041.1| hypothetical protein RUMGNA_01345 [Ruminococcus gnavus ATCC 29149]
          Length = 1157

 Score = 1078 bits (2789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1047 (35%), Positives = 571/1047 (54%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F ++A   GI+P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYREARKQGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G         +VLL     GY  L+++VSR +         
Sbjct: 62   ILGCEVYVAPNSRFDRETAGGES--RYHHLVLLAENNTGYANLMKIVSRGFTEG-YYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L++   EG+I L+   +G + R      ++ A+K  L ++ +F     ++ +Q 
Sbjct: 119  RVDKDLLRQYH-EGIIALSACLAGEVQRYLSRGLTEEAKKVALEYQDIFGKGNFFLEMQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     + +QL+    + LV TN+  +   ED + HD+L+ +     +  ++R R
Sbjct: 178  HGIPEQQLVNQRQIQLSKETGIELVVTNDIHYTYAEDAKPHDILLCIQTGKKLDDENRMR 237

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM ++F    +ALENT +IA RC   ++     LP++   +       
Sbjct: 238  YEGGQYYVKSPQEMEALFPYAKQALENTQKIANRCEVEIEFGVTKLPKYDVPDGM----T 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GLE          G  +++ ++RL +EL+ I  M +  YFLIV DFI++
Sbjct: 294  SWEYLNKLCWEGLEKHY-------GEPSRELKERLRYELDTIRNMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + I VGPGRGS AGS+ +Y L IT+IDP+R+ LLFERFLNP+R++MPD D+DFC +R
Sbjct: 347  AKDHGIAVGPGRGSAAGSIVSYCLEITNIDPIRYQLLFERFLNPERVTMPDIDVDFCFER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG+L A+  +RDVGR + +PY+ VD + K+IP +    
Sbjct: 407  RQEVIDYVVRKYGKDRVVQIVTFGTLAARGVIRDVGRVMDLPYAFVDSIAKMIPQELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   R+    DP V  L+++ ++LEGL RH+S HAAG+VIG R +   VP+ 
Sbjct: 467  ID-KALQMNPELRKTYENDPQVKLLIDMCKRLEGLPRHSSMHAAGVVIGQREIDDFVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            R        TQF M  +E+ GL+K DFLGL+TLT++Q ++     +  ++D+  I ++D 
Sbjct: 526  RAS-DGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVQLAKSKNPELDMDQIDYNDK 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +    + T  T GIFQLES GM+  ++ ++P+ +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 585  QVLSYIGTGKTDGIFQLESGGMKGFMKELKPNSLEDIIAGISLYRPGPMDFIPQYIRGKN 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK  + M 
Sbjct: 645  DAGSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKGDVMQ 704

Query: 727  KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+++ F+         G  KNGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTA+
Sbjct: 705  KERQIFVYGDEENGVPGCIKNGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTAY 764

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPVE++AA MT  ++N  K+ ++    RQ NIQI+ P +N    +F V  N I Y 
Sbjct: 765  LKYYYPVEYMAALMTSVIENPSKVAEYIYACRQMNIQILSPDINRGIGNFSVDGNNIRYG 824

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK-KLNRRVLESLVFAGALDCFGY 896
            LAAIK +G      I+E   +  PF +LEDF SR+  K  LN+R +E L+ +GALDC G 
Sbjct: 825  LAAIKSIGRPVIAAIIEDRDEFGPFKNLEDFISRMSFKDGLNKRAIEHLIKSGALDCLGG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I  +    +K        +F    E+     +I L      +       
Sbjct: 885  TRKQFMSIYVQIVDHVNQEKKYAMTGQMTLFDMVGEEEKEQFEIKLPDVGEYSKENLLAF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL  Y+   RK       +              G    +  M+ +K  
Sbjct: 945  EKEVLGAYLSGHPLQEYEDKWRKSISATTLDFQPDEETGRAKVHDGTREIVGGMITAKTI 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + +++  +     E   FP
Sbjct: 1005 KHTKTNQMMAFLSLEDLVGTVEVIVFP 1031


>gi|119471146|ref|ZP_01613678.1| DNA polymerase III subunit alpha [Alteromonadales bacterium TW-7]
 gi|119445802|gb|EAW27084.1| DNA polymerase III subunit alpha [Alteromonadales bacterium TW-7]
          Length = 1163

 Score = 1078 bits (2789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1051 (40%), Positives = 598/1051 (56%), Gaps = 42/1051 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS +S+++G      I+ K    + PAIAITD  N    + F      AGI
Sbjct: 3    APDFVHLRVHSDFSMVDGLAKTKPIVAKAQELEMPAIAITDQMNFCGLVRFYGATHNAGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+G    +          +          I +L     GY+ +  L+S  Y       
Sbjct: 63   KPIVGADFWL----------RSPEFPDEPCRITILAKDNVGYKNITLLISEAYQRGHVFH 112

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL     EGLI+L+G   G + +A   N+  V E  +  +K+ F +  Y+ L 
Sbjct: 113  RPVIDREWLAN-HKEGLIILSGAKDGDLGKALLKNNPGVIESVISFYKQHFSEHYYLELV 171

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R +R  +       V+LA   +LP+VATN  +FL  E++EAH++ +A+     +  K RP
Sbjct: 172  RTNRPLEEDYLHMAVELAAKEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDKRRP 231

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R + + YLK   +M  +FSD+PEAL+NTVEIA+RC+  +++    LP +     +    
Sbjct: 232  KRFSEEQYLKTPEQMAELFSDIPEALQNTVEIAKRCNVTVKLGEYFLPDYPTGSLN---- 287

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +  L   +  GLE RL         +     +Y +RL  EL VI +M F GYFLIV +
Sbjct: 288  -IDEFLVKVSEDGLEERLQFLFPDEEDRKVKRVEYDERLAVELGVINQMGFPGYFLIVME 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP D
Sbjct: 407  CMDRRDEVIDHVSALYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPGD 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A   + R +EA   D  V  L+++ + LEG  R+A  HA G+VI    ++  
Sbjct: 467  PGMTL-AKAFEVEPRLQEAYDGDSEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTITDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
              +Y D     PVTQF+   +E AGL+KFDFLGL+TLT+LQ ++D    R  +      D
Sbjct: 526  AALYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWAVDMTNVRMQREGKDPVD 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD ++  LL    T  +FQLES GM+  +  ++PDC ED+IALV+L+RPGP+ +
Sbjct: 586  INTIPLDDKKSIELLLRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGPLQS 645

Query: 658  IV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +   + +RK G+E+I        H  + P+L  T G+I+YQEQVMQIAQ+L+GY+L  A
Sbjct: 646  GMVDNFIDRKLGREEISYPDAQYQHESLKPILDPTYGIILYQEQVMQIAQVLAGYTLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  F  GA  NGI   +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DMLRRAMGKKKPEEMAKQRSTFEDGARNNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT WMKTH+P EF+AA M+ +MDN +KI     +     + ++PP VN     F V
Sbjct: 766  LVSYQTLWMKTHHPAEFMAAVMSADMDNTDKIVILVDECENMKLTLLPPDVNAGEFKFTV 825

Query: 831  G-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                 I Y + AIKGVG      I+EA A   PF  L DFC+RVD K+LN+RV E L++A
Sbjct: 826  NLQGEIVYGIGAIKGVGEAPVDAILEARAKGGPFKDLFDFCARVDLKRLNKRVTEKLIYA 885

Query: 889  GALDCFGYS-----RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEK 942
            GALD  G       R  LL SL +  + A    K       ++F        + +    K
Sbjct: 886  GALDKLGPEKNQAGRAILLASLKDAMRAADQHNKAEQLGQSDLFGLLATEPDEVEQAFIK 945

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             +    +   E E+  LG Y +GHP++ Y+  LR        +   T R      A +V+
Sbjct: 946  ATGLTDNEWLEGEKDTLGLYLTGHPINQYRKELRYYTSGKLVDLQPTNRDVLSTAAGLVI 1005

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            S +    +KG+R G +T  + +   +   FP
Sbjct: 1006 SARTLINKKGNRWGLITLDDKSARIDVRLFP 1036


>gi|312959407|ref|ZP_07773924.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens WH6]
 gi|311286124|gb|EFQ64688.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens WH6]
          Length = 1173

 Score = 1078 bits (2789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1060 (40%), Positives = 607/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  AGI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +  +D          P   +  I LL     GY+ L EL+SR ++  Q   SV
Sbjct: 64   ICGADLWLSNKD----------PDNALSRISLLAMNGVGYRNLTELISRGFIDGQRNGSV 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ E  +EGLIML+    G I  A    + Q AE     + ++F DR Y+ +QR 
Sbjct: 114  IIEREWVAE-ASEGLIMLSAAKEGEIGLALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +R  D       V LA     PLVATN+  F+ +ED+EAH+  + +     +    R   
Sbjct: 173  NRPNDEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + + YLK+  EM  +FSDLPEALEN+VEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSEEQYLKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRL-----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RL                Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEEGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEAPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G + N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F V
Sbjct: 768  LVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTV 827

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  RI Y L AIKGVG      I EA  D PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  NDEGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            ALD  G                +R  LL +++   K A+   +   + H ++F       
Sbjct: 888  ALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEE 947

Query: 935  SDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               +     K        R + E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  DADVYANHRKAKDLTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A M+++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 Q--TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045


>gi|300023432|ref|YP_003756043.1| DNA polymerase III subunit alpha [Hyphomicrobium denitrificans ATCC
            51888]
 gi|299525253|gb|ADJ23722.1| DNA polymerase III, alpha subunit [Hyphomicrobium denitrificans ATCC
            51888]
          Length = 1180

 Score = 1078 bits (2789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 530/1052 (50%), Positives = 701/1052 (66%), Gaps = 30/1052 (2%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             K+P FVHL+VHS+YSLLEGAL +  +     A Q PA+ +TD+NN F ALEFS K   A
Sbjct: 7    AKAPQFVHLKVHSAYSLLEGALPIAKLAKLAEAMQLPALGLTDSNNFFGALEFSDKLWGA 66

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS------IVLLVSTAEGYQRLIELVSRM 119
            G+QPI G  LD+D  DN              P       I LL  TA+G+  L+ L   +
Sbjct: 67   GVQPIAGGSLDVDFGDNRDAQPSALRSLSNEPRSKPAGKIALLAMTADGFANLMRLSKAL 126

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            Y      +   + ++ ++E  +EG+I LTGG  GPID A       +A +R+ T +K+FG
Sbjct: 127  YFEAAADEPAHVKIARIEEF-SEGIIALTGGPQGPIDSALRDGQHDLALERIKTLEKIFG 185

Query: 180  DRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            DRLYV +QRH   +    E  ++ LAY   +P+VATN   F    DYEAHDVL+ +A   
Sbjct: 186  DRLYVEVQRHGLPEEADVEPDLLDLAYARRIPIVATNECYFAQRGDYEAHDVLLCIADGR 245

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
             V + +R R +P+HYLK  +EMVS+F+DLPEAL NTVEIA RC+   +   PILPRF+  
Sbjct: 246  YVVEDNRRRASPEHYLKTEAEMVSLFADLPEALANTVEIAMRCTARPEGRKPILPRFV-- 303

Query: 299  ECDDIQKEEEN------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            + DD   E EN      EL+ +A  GL  RLA    A G+  +DY +RL +E++VI +MK
Sbjct: 304  KADDSLSEIENFRLEAAELKAQAKDGLARRLAAHGPAAGFTVEDYEKRLVYEIDVITQMK 363

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFLIVADFI+W+K N +PVGPGRGSGAGS+ AYALTITD+DPL+F LLFERFLNP+R
Sbjct: 364  FPGYFLIVADFIKWSKANGVPVGPGRGSGAGSLVAYALTITDLDPLQFGLLFERFLNPER 423

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFD+DFCQ++RD VI YVQ KYG +RVAQIIT G LQA+A LRDVGR LQMPY QV
Sbjct: 424  ISMPDFDVDFCQEKRDRVIDYVQKKYGDDRVAQIITHGKLQARAVLRDVGRVLQMPYGQV 483

Query: 473  DRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            DRLCKL+PN+PA+PV+L QAI  + + +E R  +P V RLLEI+QKLEGLYRHASTHAAG
Sbjct: 484  DRLCKLVPNNPANPVTLAQAIEGEPKLQEERDREPIVARLLEIAQKLEGLYRHASTHAAG 543

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VIGDRPL +LVP+YRD +S  P+TQ+N K +E AGL+KFDFLGLKTLT+L+K++  ++Q
Sbjct: 544  MVIGDRPLEELVPLYRDPKSHFPITQYNWKMVEAAGLVKFDFLGLKTLTVLEKAVKLISQ 603

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
             RGV VDL  +P DD  TY +L    T G+FQLES+GMR++L+ ++PD  EDIIA+V+LY
Sbjct: 604  VRGVTVDLPSLPLDDKPTYDMLAKADTAGVFQLESTGMRESLKRLKPDRFEDIIAMVALY 663

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+DNI  Y NRK+G+E +  +H ++  +LKET GVIIYQEQV+QIAQ++ GY+L +A
Sbjct: 664  RPGPMDNIPTYINRKHGEEPVDYLHDMLQGILKETYGVIIYQEQVIQIAQVMGGYTLGQA 723

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK K EM KQ+ RF+ GA   G+ K  A  IFEL+ KFA YGFNKSHAAAYA
Sbjct: 724  DMLRRAMGKKDKAEMAKQQARFVEGAVAKGVKKEEAKYIFELVDKFAGYGFNKSHAAAYA 783

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SY TA++K ++  EF AASMTL+M N +K+  F  +AR+  I+++PP VN   VDF V
Sbjct: 784  LVSYHTAYLKANFREEFFAASMTLDMGNTDKLAMFASEARKSGIRMLPPCVNQSAVDFGV 843

Query: 831  G-------DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882
                       I YSLAA+K +G      I+        F SL DF  RVD+K LN+R +
Sbjct: 844  EPAAEGAKHGAIRYSLAALKNIGAGAVETIVNERNEKGAFKSLADFAERVDAKALNKRAI 903

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E+L   GA D F   R ++  + D I   AQ    N      ++F    G  + ++ L  
Sbjct: 904  ETLAKGGAFDAFNNDRARVAANADTILASAQRRTANEAQGMTDLFG--SGGKAAELVLRS 961

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAM 1000
                    R   E   +GFY SGHPLD Y  +L K+G++ + E  V T RG    RLA +
Sbjct: 962  AEGWTPMERLAAEFEAIGFYLSGHPLDQYDHVLSKLGVRKFTEFEVLTERGATAGRLAGV 1021

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V++ ++++++KG++  + +FS+   ++EA  F
Sbjct: 1022 VIAARERRSQKGNKFAFASFSDATGQFEAVIF 1053


>gi|259417587|ref|ZP_05741506.1| DNA polymerase III subunit alpha [Silicibacter sp. TrichCH4B]
 gi|259346493|gb|EEW58307.1| DNA polymerase III subunit alpha [Silicibacter sp. TrichCH4B]
          Length = 1166

 Score = 1078 bits (2788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 504/1057 (47%), Positives = 698/1057 (66%), Gaps = 47/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP F+HL+ H+ YSLLEGA+ L  + D  +++Q PAIA+TDTN++F+ALEFS     
Sbjct: 1    MTASPRFIHLRTHTEYSLLEGAVRLKKLPDLCSSNQMPAIAVTDTNSMFAALEFSVTLSG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPIIGCQ+D+  +     ++ G+ P    P +VLL     GY+ L+ L S +Y+ + 
Sbjct: 61   AGIQPIIGCQVDLTFE----KSDPGEKPKFPAP-VVLLAQNEAGYEHLMRLSSCLYVNNG 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q  ++ L  L E  + GLI LTGG  GPI +         AE  +   K++F DRLYV
Sbjct: 116  G-QLPQVSLEEL-EANSAGLICLTGGPEGPIGKLLQQGQRPAAEALMQRLKEMFPDRLYV 173

Query: 185  NLQRHRGYDRYRESQV------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G D   E++       V++AY  +LPLVATN+  F   E YEAHD L+ +A   
Sbjct: 174  ELQRHPGEDGQPEAETLTERGHVEMAYAMDLPLVATNDVYFPKTEMYEAHDALICIAEGA 233

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K++ EM+++F+DLPEA+ENTVEIA+RC+F+     PILP+F +
Sbjct: 234  YVDQAEPRRRLTAQHYFKSQEEMIALFADLPEAIENTVEIAQRCAFMAYRRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E D        ELR +A  GL+ RLA   I      + Y++RLDFEL +I  M F GYF
Sbjct: 294  DEVD--------ELRRQANEGLQQRLA--VIPHAVPVEKYQERLDFELGIIESMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+W K+  IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWGKEQGIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMP+ QVDRL K
Sbjct: 404  FDIDFCMDRREEVIKYVQQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPFGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+ +A+ D+ R  E    +P VDRLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALQDEPRLAEEARNEPVVDRLLTYGQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----- 591
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT+++ ++  + +     
Sbjct: 524  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIENAMKLIFKSGRDL 583

Query: 592  -------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                          G +  ++LIP DD  TY+L +   T+ +FQ+ES+GM  AL+ M+P 
Sbjct: 584  HIGADGTELYEPAEGAENQINLIPLDDEVTYNLYSRAKTVAVFQVESTGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG  KI S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPVYCEVKNGLRKITSVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKIKE MD ++ +F  GA++NG+ K  A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   EK+  + ++ ++   +   
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTEKLAIYFEEVKKGLQLPYA 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
             P +N     F V D  + Y+L A+K VG      I+ A  D+PF +L DF  RVD K++
Sbjct: 824  APDINRSLATFDVVDGELIYALGALKNVGVDAMNLIVTARGDQPFVTLYDFARRVDLKRV 883

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE L  AGA D    +R ++ +SL+ + +Y+  +++ + +   ++F  E G    +
Sbjct: 884  GKRPLEMLARAGAFDVLDSNRRRVFESLEGLVQYSAAIQEQKNSNQVSLFG-EAGDDLPE 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--I 995
              +        + R   E + +GFY +GHPLD Y P L++  +   +E +A         
Sbjct: 943  PRMAGVPDWLPAERLSEEFKAVGFYLTGHPLDDYMPALKRKDVMTLDEVMAKAERGPFMA 1002

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++A +V  +Q++K+ +G+R  +   S+    YE   F
Sbjct: 1003 KMAGVVAGRQERKSARGNRFAFAQLSDTTGAYEVTIF 1039


>gi|77164364|ref|YP_342889.1| DNA polymerase III, alpha subunit [Nitrosococcus oceani ATCC 19707]
 gi|254433438|ref|ZP_05046946.1| DNA polymerase III, alpha subunit subfamily, putative [Nitrosococcus
            oceani AFC27]
 gi|76882678|gb|ABA57359.1| DNA polymerase III, alpha subunit [Nitrosococcus oceani ATCC 19707]
 gi|207089771|gb|EDZ67042.1| DNA polymerase III, alpha subunit subfamily, putative [Nitrosococcus
            oceani AFC27]
          Length = 1158

 Score = 1078 bits (2788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/1045 (42%), Positives = 622/1045 (59%), Gaps = 36/1045 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +PSFVHL++H+ YSL++  + +  ++   +    PA+A+TD +N+F+ ++F + A AAG+
Sbjct: 2    APSFVHLRLHTEYSLVDSLVRIRPLIQATSEAGMPAVAVTDQSNVFAMIKFYRAAQAAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG  + +           G      V    LL     GY+ L  L+SR Y   Q + 
Sbjct: 62   KPIIGADIFLV----------GSGEHSRVSRFTLLCQNELGYRNLSSLLSRAYREGQYQG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+   WLQ +  +GLI+L+GG  G + +A    +   A K L  ++ LF  R Y+ L 
Sbjct: 112  IPRLQWDWLQNL-NDGLIILSGGREGDVGQALLAGNDIQAGKLLERWQALFPGRYYLELH 170

Query: 188  RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R     +       + LA   + P+VATN+  FL  +D+EAH+  + +     ++   RP
Sbjct: 171  RTGREGEEDYLHAAIALALARDTPVVATNDVRFLRPQDFEAHEARVCIHEGRTLNDPRRP 230

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               +   YL+  SEM  +F+DLPEALENTVEIARRC+  L +    LP F   E   I  
Sbjct: 231  RHYSEQQYLRTPSEMTELFADLPEALENTVEIARRCNLELTLGKHYLPNFPVPEDLSI-- 288

Query: 306  EEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E  L  +A  GLE RL         +      Y  RL  EL VI +M F GYFLIVAD
Sbjct: 289  --EAFLAAEARRGLEQRLVKLYPREAKRETEQPAYEARLAEELAVINQMGFPGYFLIVAD 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAKKN IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+S+PDFDIDF
Sbjct: 347  FIRWAKKNGIPVGPGRGSGAGSLVAYALQITDLDPLAFDLLFERFLNPERVSLPDFDIDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RRD VI YV + YG + V+QIIT+GS+ AKA +RDVGR L  PY  VD++ KLIP D
Sbjct: 407  CMERRDRVIDYVSHYYGRDHVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDQIAKLIPFD 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+A+    R     +  V  L+++++KLEGL R+A  HA G+VI  + L++ 
Sbjct: 467  LKMTLD-KALAESEGLRSRYEGEEEVRFLIDLARKLEGLIRNAGKHAGGVVIAPKKLTEY 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
            VP Y +  +   VTQF+   IE  GL+KFDFLGL+TLT+L  +L  + ++  +      D
Sbjct: 526  VPYYCEQGASGVVTQFDKDDIETIGLVKFDFLGLRTLTILDWALQAINRQRTQQGEALLD 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+L+P DD ++Y LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+ +
Sbjct: 586  LALLPMDDPKSYALLKRCATTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQS 645

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  Y NRK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+GY+L EAD+LRR
Sbjct: 646  GMVDDYINRKHGRAQVNYPHPALEPILKPTYGVIVYQEQVMQIAQVLAGYTLGEADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM +Q+  F +GA    + +  A  IF+L+ KFA+YGFNKSH+AAYAVI+YQ
Sbjct: 706  AMGKKKPEEMAEQRAIFTAGAKAREVDEKTATAIFDLMEKFAEYGFNKSHSAAYAVIAYQ 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834
            TA++K HYP  ++AA ++ +MDN EK+K F ++    N+ ++PP VN     F   G+  
Sbjct: 766  TAYLKAHYPASYMAAVLSADMDNTEKVKAFVEECWAMNLDLLPPDVNASNYSFSAQGETA 825

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L AIKGVG      I++      P+  L +FC R+D +K++RRVLE+L+ AGALD 
Sbjct: 826  IRYGLGAIKGVGAAALEGIIKVRERHGPYQDLFEFCRRIDLRKVSRRVLEALIRAGALDS 885

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRF 952
             G  R  L  SL+     A+   +N +    ++F  +  +   +     +    +   R 
Sbjct: 886  LGVERATLEASLETALALAEQHCRNASLGQNDLFGLDLVSEEGEAGNYVEVREWDKEQRL 945

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-----RGNNIRLAAMVVSKQQK 1007
              E+  LG Y SGHP+D YK  L+++      E +        R   I +A +V S +  
Sbjct: 946  ALEKETLGLYLSGHPIDCYKQELKQIAPCRIVELIDRANNRQSRNQQIVIAGLVGSVRTN 1005

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
            K R+G R  +VT  + +   E   F
Sbjct: 1006 KARQGGRNAFVTLEDGSARLEIKAF 1030


>gi|312883823|ref|ZP_07743542.1| DNA polymerase III subunit alpha [Vibrio caribbenthicus ATCC
            BAA-2122]
 gi|309368572|gb|EFP96105.1| DNA polymerase III subunit alpha [Vibrio caribbenthicus ATCC
            BAA-2122]
          Length = 1143

 Score = 1078 bits (2788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1031 (39%), Positives = 602/1031 (58%), Gaps = 37/1031 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G   +  ++ K+A    PA+A+TD  NL   ++F   A ++G++PIIG    +    
Sbjct: 1    MVDGLSKVPALVKKVAEMGMPAVALTDFTNLCGLVKFYGSAHSSGVKPIIGADFLM---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q +     +  I +L +   GY+ L  L+S+ YL    +    I   WL E+ +
Sbjct: 57   ------QSEEFGEELTRITVLAADNLGYKNLTLLISKAYLRGHIQHHPVIDKKWLAEL-S 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQV 200
            +GLI+L+GG SG I +A    +  VA + +  +K+ F DR Y+ L R  R  +       
Sbjct: 110  QGLIVLSGGRSGEIGKALLKGNQHVASQCVDFYKEYFPDRFYLELTRTGRADEEAYLHFA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            ++LA   +LP+VATN  + L +  +EAH++ +A+     +    RP   +   YL++  E
Sbjct: 170  LELAEITQLPVVATNEVVILDDSFFEAHEIRVAIHDGYTLEDPRRPKNYSSQQYLRSEQE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEALEN+VEIA+RC+  +++    LP F          EE   L  K+  GL
Sbjct: 230  MCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPAFPTD-----GMEETEFLIKKSQQGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y +RL  EL VI  M F GYFLIV +FIQW+K N IPVGP
Sbjct: 285  EERLEFLFPDPNTRAQRRPEYDERLQVELEVINNMGFPGYFLIVMEFIQWSKDNAIPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L   +  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHGFGFVDRISKLVPPDPGMTLE-KAFQAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
               E    D  +  L+++ + LEG  R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  ALPELYNNDEEIKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-----LSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L  +  R  +       +  IP  D  +++L
Sbjct: 524  QFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKLPVVIESIPLQDQASFNL 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQNAETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             I        H  +   L  T G+I+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  AISYPDETWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNG++  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP
Sbjct: 704  MAKQRGTFKEGAEKNGVNGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V     I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECIRMKLKVLPPDINSGVYRFNVDETGAIVYGIGAIK 823

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+ A      F  L DFC+R+D KK+N+RV+E L++AGALD  G  R  ++
Sbjct: 824  GVGEGPIEAILTAREKGGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAAMM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL++  K A    +  +    ++F    +     +    + +     V  E E+  LG 
Sbjct: 884  ASLNDAVKAASQHHQAESFGQTDLFGVLTQAPDEIEKKYTQVAPWPEKVWLEGERDTLGL 943

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y +GHP++ Y   L K      +++  T R  ++ ++ +V++ +   T++GSRIG +T  
Sbjct: 944  YLTGHPINAYLRELTKYTSCRLKDATPTRRDQSVTVSGLVIAARVMTTKRGSRIGIMTLD 1003

Query: 1022 EPAKEYEANFF 1032
            + +   E   F
Sbjct: 1004 DRSGRMEVMLF 1014


>gi|254463266|ref|ZP_05076682.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacterales bacterium HTCC2083]
 gi|206679855|gb|EDZ44342.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacteraceae bacterium HTCC2083]
          Length = 1168

 Score = 1078 bits (2788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 504/1058 (47%), Positives = 689/1058 (65%), Gaps = 47/1058 (4%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             + K+P F+HL+ H+ YSLLEGAL L  + D   +   PA+A+TDTNNLF+ALEFS  A 
Sbjct: 2    AMTKAPRFIHLRAHTEYSLLEGALRLKKLPDLCKSMDMPAVAVTDTNNLFAALEFSVGAS 61

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AG+QPIIGCQ+DI       +  Q          +VLL     GY+ L++L S +Y+ +
Sbjct: 62   GAGVQPIIGCQVDITY-----LAAQPGERAKAPAPLVLLAQNEVGYENLMKLNSCLYIDN 116

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             G Q  ++ L  L  +   GLI L+GG  G I +         AE  +      FGDRLY
Sbjct: 117  DG-QLPQVSLDDLDTL-NAGLICLSGGPEGAIGKLLQGGQRPAAEALMDRLHGAFGDRLY 174

Query: 184  VNLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            V LQRH         +R  E   V++AY   LPLVATN+  F     YEAHD L+ +A  
Sbjct: 175  VELQRHPENGGLPEAERLTERGFVEMAYAKSLPLVATNDVYFPKSSMYEAHDALICIADG 234

Query: 238  TVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V Q+D R ++T  HY K++ EMV++F+DLPEA++NT+EIA+RC+F      PILP+F 
Sbjct: 235  AYVDQQDPRRKLTAQHYFKSQEEMVTLFADLPEAIKNTIEIAKRCAFQAYRRDPILPKFA 294

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            + E          ELR  A  GL+ RLA   I      ++Y++RLDFEL++I  M F GY
Sbjct: 295  DDEV--------AELRRIANEGLQKRLA--VIPHSVTLEEYQERLDFELDIIEGMGFPGY 344

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFIQWAK N IPVGPGRGSGAGS+ AYALT+TD+DPLR+SLLFERFLNP+R+SMP
Sbjct: 345  FLIVADFIQWAKDNGIPVGPGRGSGAGSLVAYALTVTDLDPLRYSLLFERFLNPERVSMP 404

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL 
Sbjct: 405  DFDIDFCMDRREEVIQYVQEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLS 464

Query: 477  KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K+IP +   PVS+ +A+AD+ R RE    +  V RLL+  Q++EGL R+ASTHAAG+VIG
Sbjct: 465  KMIPVEGVKPVSIEKALADEPRLREEARNEEVVKRLLDYGQQVEGLLRNASTHAAGVVIG 524

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            DRPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ +   G +
Sbjct: 525  DRPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMEQITAGGRQ 584

Query: 596  ------------------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
                               D++ IP DD  +Y L  +  T+ +FQ+ESSGM  AL+ M+P
Sbjct: 585  LHIAADGTELYTPAAGTVDDINAIPLDDENSYKLYASAKTVAVFQVESSGMMDALKRMKP 644

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             CIEDI+ALV+LYRPGP++NI  Y   KNG ++  S+HPLID +L+ETQG+I+YQEQVMQ
Sbjct: 645  TCIEDIVALVALYRPGPMENIPTYCEVKNGLKERESVHPLIDHILEETQGIIVYQEQVMQ 704

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  GA +NG+    A  +F+LL KFA
Sbjct: 705  IAQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAKENGVPAKKASEVFDLLEKFA 764

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQI 816
            +YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ ++  ++  
Sbjct: 765  NYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVKKGLDLPW 824

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            +PP VN     FKV +  + Y+L A+K VG    + ++E   DKPF ++ D   RVD K+
Sbjct: 825  VPPCVNRSDATFKVANGELVYALGALKNVGVEAMKLVVEGRGDKPFSTIYDLARRVDLKR 884

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            + +R LE LV +GA D    +R ++  SLD +  Y+Q + + + +   ++F  E G    
Sbjct: 885  VGKRPLEMLVRSGAFDQLDPNRRRVFDSLDGLVNYSQAIFEQKNSNQVSLFG-EAGADLP 943

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGNNI 995
            +  L   S    + R   E R +GFY SGHPLD Y   L++ G+   +E  A    G  +
Sbjct: 944  EPRLSPVSDWMPAERLNEEFRAVGFYMSGHPLDDYMAPLKRKGVMTLDEVTAKAENGALV 1003

Query: 996  -RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +LA +V  +Q++K+ +G+R  +   S+ +  YE   F
Sbjct: 1004 AKLAGVVAGRQERKSARGNRFAFAQLSDTSGAYEVTLF 1041


>gi|330837734|ref|YP_004412375.1| DNA polymerase III, alpha subunit [Spirochaeta coccoides DSM 17374]
 gi|329749637|gb|AEC02993.1| DNA polymerase III, alpha subunit [Spirochaeta coccoides DSM 17374]
          Length = 1170

 Score = 1078 bits (2788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1028 (38%), Positives = 603/1028 (58%), Gaps = 23/1028 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YSLL+GA S+   + K       A+AITD  N+F A +F +   AA I+P
Sbjct: 3    GFVHLHNHTDYSLLDGAGSIPKYIAKAKELGMNALAITDHGNMFGAHKFYKACKAADIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  +  + +     +G    P    ++LL    +GY  L+EL S  Y+        
Sbjct: 63   IIGCEFYVAPESHTLR--EGVEGKPRAYHLILLAMNEKGYHNLMELNSISYVEG-FYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            RI    L E   EG++ L+    G I      N  + A+K  L    +F   R Y+ +Q 
Sbjct: 120  RIDHE-LIEQHNEGVLCLSACLGGEIASLLKDNRYEDAKKAALWHASVFDGGRYYLEIQD 178

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++      + +L+    +PLVATN+  ++++ D  AHD+L+ +      ++ DR R
Sbjct: 179  HGLPEQKTVNQALARLSTETGIPLVATNDIHYINKSDANAHDILLCIGMGKKKNEADRMR 238

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              + ++Y+K+  EM   F   P+A+ENTV+IA  C+  +    P LPRF   +       
Sbjct: 239  FHSAEYYMKSAEEMEKQFLWCPQAVENTVKIADLCNLEIHFPGPRLPRFRVPKGF----T 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +++ LR+ +  GL  R A+          D  +RLD+EL+VI +M F GYFLIV D+I W
Sbjct: 295  DDSYLRHLSHEGLARRYAE-------VTPDLEKRLDYELDVIIQMGFQGYFLIVRDYIYW 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+ +IPVGPGRGSGAGS+ AY   ITD+DP++++LLFERFLNP+R +MPDFDIDFC + 
Sbjct: 348  AKQRDIPVGPGRGSGAGSLVAYCTEITDVDPIKYNLLFERFLNPERKTMPDFDIDFCFEH 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV   YG + VAQI TFG+L+AKA ++DV R L +P+ + +R+ K+IP+DP   
Sbjct: 408  RQEVIEYVTEHYGEDHVAQIATFGTLKAKAVVKDVARVLDIPFEESNRIAKMIPDDPKMT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+      ++   A      L + + +LEGL RH STHAAG+VIG++ L   VP+Y
Sbjct: 468  LK-KALEQSPELKQVADAGGIYGELFDAAFRLEGLNRHTSTHAAGVVIGEKKLLTYVPLY 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            RD ++    TQF M  +E+ GL+K D LGLKTLTL++ ++D + +      +  I  +D 
Sbjct: 527  RDAKTGAISTQFTMDQLEENGLVKMDLLGLKTLTLIKHTVDLVHKTNPGFSIEDINEEDE 586

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T+ +L    +  +FQ ES+GM++ L    P+ IED++AL +LYRPGP+D I  +   KN
Sbjct: 587  KTFDMLRRGDSACVFQFESTGMQKILRDALPNSIEDLVALNALYRPGPMDYIPQFVESKN 646

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+  I   HP ++  LK T GVI+YQEQVM++AQ++ GY+L  AD+LRR M KK  EE+ 
Sbjct: 647  GRMPITYAHPDLEETLKTTYGVIVYQEQVMKVAQIIGGYTLGAADILRRIMSKKKAEELA 706

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+ +F+ GA   G  + +A  IF++L  FA YGFNKSHA AY+VI+YQTA++K +YP E
Sbjct: 707  AQEVKFVEGALAKGYQEKLARYIFKMLEPFAGYGFNKSHAVAYSVIAYQTAFLKANYPAE 766

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+AA++T E++N +K  ++ ++A+   I+++PPS+N     F   + +I Y LA IK VG
Sbjct: 767  FMAANLTNEINNPDKFSEYLREAKHMGIEVLPPSINYSERQFNAVEGKIVYGLAGIKNVG 826

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
               A  I+       P++S  DF  RVDS+ +N ++LESL+ AG  D    +R  L++++
Sbjct: 827  EGVADLIIRERNEHGPYESFIDFLVRVDSRAMNSKLLESLIKAGTFDSMEENRPTLIENM 886

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +    YAQ  ++++ +   ++F   +G   D  T+ +        + E E+ +LGFY SG
Sbjct: 887  EAAVIYAQKQKESKESGQSSLF---EGDDIDSFTMTRHPDWEMREKLEIEKALLGFYISG 943

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HPLD+Y+   ++  +  +       R   I L AM+   +   T+K + +G++   + + 
Sbjct: 944  HPLDLYRDAWKRSVLVDFSRPERFPRNRQISLVAMITDIRTLMTKKQTMMGFLELVDFSG 1003

Query: 1026 EYEANFFP 1033
              EA  FP
Sbjct: 1004 TLEATCFP 1011


>gi|330936801|gb|EGH40958.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. pisi str.
            1704B]
          Length = 1173

 Score = 1078 bits (2788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1060 (39%), Positives = 609/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173  NRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMTELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA               Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDVGR     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVGRVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVD 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +         +D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F V
Sbjct: 768  LVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              D RI Y L AIKGVG      I +A  D PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  SDDGRILYGLGAIKGVGEGPVEAITDARQDGPFKDLFDFCARVDLKRVNKRTLDGLIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KG 932
            ALD  G                +R  LL +L+   + A+   ++R + H ++F     + 
Sbjct: 888  ALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFVEA 947

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  DADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 Q--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|182678571|ref|YP_001832717.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica
            ATCC 9039]
 gi|182634454|gb|ACB95228.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica
            ATCC 9039]
          Length = 1159

 Score = 1078 bits (2788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 525/1049 (50%), Positives = 691/1049 (65%), Gaps = 28/1049 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  F+HL VHS++SL EGA+ +  ++   AAD  PA+A+TDTNNLF ALEFS+K   
Sbjct: 1    MPGSVGFIHLHVHSAFSLREGAIKIEKLVKLAAADAMPALALTDTNNLFGALEFSEKLVK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GIQPI G QL +D  D   M  +G+       ++VLL     GY  L+ L SR +L   
Sbjct: 61   SGIQPIAGLQLTVDFGDGAAMAPRGEENGAGRANLVLLAQDEAGYVNLMHLTSRAWLDPV 120

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  +    L     +GLI L+GG  GP+DRAF     + A  R      LF +RLYV
Sbjct: 121  PGDPPHVRFDQL-HGHADGLIALSGGPDGPLDRAFAAQRPEQAVLRAQHLAALFPNRLYV 179

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH    +R  E  ++ LAY   LPL ATN   F +  DYEAHD L+ +A   V+ + 
Sbjct: 180  ELQRHSLQAERSNEPLLLDLAYDRSLPLAATNEPYFAAASDYEAHDALLCIAEGAVLGEP 239

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R +++P+H LK R+EMV++F+DLPEA  NTVEIA RC++      PILPRF +    D 
Sbjct: 240  QRRQLSPEHRLKTRTEMVALFADLPEATANTVEIAMRCAYRPLTRKPILPRFGDTGHAD- 298

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              EE  ELR +A AGLE RLA    A G+   DYR RL FEL++I +M+F GYFLIVADF
Sbjct: 299  --EEAKELRRQAEAGLEKRLAAHPPAPGFTEDDYRARLAFELDIIVKMQFPGYFLIVADF 356

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++AK  +IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SMPDFDIDFC
Sbjct: 357  IKYAKSQDIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSMPDFDIDFC 416

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRRDEVI YV+ +YG ++VAQIITFGS  A+  +R+VGR L+MP  QVD+L KL+P +P
Sbjct: 417  QDRRDEVIAYVRRRYGEDKVAQIITFGSFLARGVMRNVGRVLEMPLGQVDKLAKLVPQNP 476

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A PVSL QAI  + R +EA  ++P V R+L I++ LEGLY +ASTHAAGIVIGDRPL  L
Sbjct: 477  AAPVSLKQAIEGEPRLQEAASSEPRVARMLTIAETLEGLYSNASTHAAGIVIGDRPLEHL 536

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD +SD+P TQFNMKW+E AGL+KFDFLGLKTLT L   +  LA+RG+ VDL+ IP
Sbjct: 537  VPLYRDPKSDMPATQFNMKWVEPAGLVKFDFLGLKTLTTLSTCVKLLAKRGIIVDLAKIP 596

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +TY +L    T+G+FQLES+GMR+AL  M+ D  EDIIALV+LYRPGP+ NI  Y 
Sbjct: 597  LDDQKTYAMLGRGETVGVFQLESAGMRKALVEMRADHFEDIIALVALYRPGPMANIPTYC 656

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K G+EK   IHP I+ +LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK
Sbjct: 657  AVKLGEEKADYIHPKIEHILKETFGVIIYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIK 716

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EMD Q+ RF++G+   G++K  A  IF+LLAKFADYGFNKSHAAAYA+I+YQTAW K +
Sbjct: 717  AEMDAQRSRFVTGSVDRGLTKKQADEIFDLLAKFADYGFNKSHAAAYALIAYQTAWFKAN 776

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--------- 833
            +PVEFLAASMTL+  N +K+ +FC +AR+  I +  P +    VDF V            
Sbjct: 777  HPVEFLAASMTLDKSNTDKLAEFCNEARRLGIPVDRPCIQKSGVDFDVALENKGAGQESK 836

Query: 834  -------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                    I Y+L+AIKGVG+  A  ++ A A + F  L DF  R++ +++N+R+LE LV
Sbjct: 837  ESENANLHIRYALSAIKGVGSAQAEALVAARAGRSFKDLSDFTHRLNPREINKRMLECLV 896

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGA D     R ++  +++ +   A    +        +F     +    I   +    
Sbjct: 897  AAGAFDTLDKDRAKIFATIETLLAMANRRCEEEAAGQSVLFGGPAAS---AIIFPQTDPW 953

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN---IRLAAMVVS 1003
              + R + E   +GF+ SGHPLD Y  IL ++ ++ +      ++       RLAA V+ 
Sbjct: 954  PLAERLQREFDAVGFFLSGHPLDGYASILSRLKVQRWATFARQVKQGQASAARLAATVLD 1013

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +++++T+ G+++G V  S+ + +YEA  F
Sbjct: 1014 RKERRTKSGTKMGIVQLSDQSGQYEAILF 1042


>gi|99080341|ref|YP_612495.1| DNA polymerase III subunit alpha [Ruegeria sp. TM1040]
 gi|99036621|gb|ABF63233.1| DNA polymerase III alpha subunit [Ruegeria sp. TM1040]
          Length = 1166

 Score = 1078 bits (2787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 505/1057 (47%), Positives = 696/1057 (65%), Gaps = 47/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+ H+ YSLLEGA+ L  + D   A+Q PAIAITDTN++F+ALEFS     
Sbjct: 1    MTAHPRFIHLRTHTEYSLLEGAVRLKKLPDLCKANQMPAIAITDTNSMFAALEFSVTLSG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPIIGCQ+D+  +     ++ G+ P    P +VLL     GY+ L+ L S +Y+ + 
Sbjct: 61   AGIQPIIGCQVDLTFE----KSDPGEKPKFPAP-VVLLAQDETGYEHLMRLSSCLYVDNG 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q  ++ L  L E    GLI LTGG  GPI +         AE  +   K +F DRLYV
Sbjct: 116  G-QLPQVSLEEL-EANAGGLICLTGGPEGPIGKLLQQGQRPAAETLMQRLKGMFPDRLYV 173

Query: 185  NLQRHRGYDRYRESQV------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G D   E++       V++AY  +LPLVATN+  F   E YEAHD L+ +A   
Sbjct: 174  ELQRHPGEDGQPEAETLTERGHVEMAYAMDLPLVATNDVYFPKTEMYEAHDALICIAEGA 233

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K++ EM+++F+DLPEA+ENTVEIA+RC+F+     PILP+F +
Sbjct: 234  YVDQAEPRRRLTAQHYFKSQEEMIALFADLPEAIENTVEIAQRCAFMAYRRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E D        ELR +A  GL+ RLA   I      + Y++RLDFEL +I  M F GYF
Sbjct: 294  DEVD--------ELRRQANEGLQQRLA--VIPHAVPVEKYQERLDFELGIIESMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+W K+  IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWGKEQGIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMP+ QVDRL K
Sbjct: 404  FDIDFCMDRREEVIKYVQQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPFGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+ +A+ D+ R  E    +P VDRLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALQDEPRLAEEARNEPVVDRLLTYGQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----- 591
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT+++ ++  + +     
Sbjct: 524  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIENAMKLIFKSGRDL 583

Query: 592  -------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                          G +  ++LIP DD  TY+L +   T+ +FQ+ES+GM  AL+ M+P 
Sbjct: 584  HIGADGTELYEPAEGAENQINLIPLDDEVTYNLYSRAKTVAVFQVESTGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPVYCEVKNGQREITSVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKIKE MD ++ +F  GA++NG+ K  A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   EK+  + ++ ++   +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTEKLAVYFEEVKKGLQLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
             P +N     F V D  + Y+L A+K VG      I+ A  DKPF +L DF  RVD K++
Sbjct: 824  APDINRSLATFDVVDGELVYALGALKNVGVEAMNMIVTARGDKPFVNLYDFARRVDLKRV 883

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE L  AGA D    +R ++ +SL+ + +Y+  +++ + +   ++F  E G    +
Sbjct: 884  GKRPLEMLARAGAFDVLDPNRRRVFESLEGLVQYSAAIQEQKNSNQVSLFG-EAGDDLPE 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--I 995
              +        + R   E + +GFY +GHPLD Y P L++  +   +E +A         
Sbjct: 943  PRMAGVPDWLPAERLSEEFKAIGFYLTGHPLDDYMPALKRKDVMTLDEVMAKAERGPFMA 1002

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++A +V  +Q++K+ +G+R  +   S+    YE   F
Sbjct: 1003 KMAGVVAGRQERKSARGNRFAFAQLSDTTGAYEVTIF 1039


>gi|157372010|ref|YP_001479999.1| DNA polymerase III subunit alpha [Serratia proteamaculans 568]
 gi|157323774|gb|ABV42871.1| DNA polymerase III, alpha subunit [Serratia proteamaculans 568]
          Length = 1162

 Score = 1078 bits (2787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1047 (40%), Positives = 606/1047 (57%), Gaps = 40/1047 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L +  EGYQ L  L+SR Y    G   
Sbjct: 64   PIIGADFHV----------QSEVLGDELAQLTVLAANNEGYQNLTLLISRAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGLI+L+G   G + +     +    E+ L  +++ F D  Y+ L R
Sbjct: 114  PIIDRDWLIE-HREGLILLSGARQGDVGKFLLRGNQPQVEQCLEFYQQYFPDSYYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  FL  +D++AH++ +A+     +    RP 
Sbjct: 173  TGRPDEENYLHAAVALATERGLPVVATNDVRFLVADDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T   Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYTSQQYMRDEDEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVLKSKEGLEDRLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDLVIDHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        +D+
Sbjct: 527  PLYCDAEGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINARRAKTGLEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   GI   ++V IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKNPVEMAKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYHFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            D     Y + AIKGVG      I+EA        F  L D C+R D KKLNRR+LE L+ 
Sbjct: 827  DEGEIVYGIGAIKGVGEGPIEAILEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIM 886

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     + 
Sbjct: 887  SGAFDRLGPHRAALMNSLPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANVPLW 946

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP+  Y   + +  G +  ++   T RG       +V++ +
Sbjct: 947  QEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIASR 1006

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1007 VMVTKRGNRIGICTLDDRSGRLEVMLF 1033


>gi|90020753|ref|YP_526580.1| DNA polymerase III subunit alpha [Saccharophagus degradans 2-40]
 gi|89950353|gb|ABD80368.1| DNA polymerase III, alpha subunit [Saccharophagus degradans 2-40]
          Length = 1173

 Score = 1078 bits (2787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1055 (39%), Positives = 601/1055 (56%), Gaps = 48/1055 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL+V + +SL++  + +  ++ + A  Q PAIA+TD +N F  ++F + A  AG+
Sbjct: 2    SSQFVHLRVRTEFSLVDSIIRVKPLVARAAQAQMPAIAVTDFHNFFGLVKFYKAAQGAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI GC   ++  D                   LL    EGY+ + EL+S  Y   Q   
Sbjct: 62   KPICGCDFRMEPLDE----------ESNPAIFTLLAMNPEGYRNITELISLSYQKGQKHG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL++  + G+I L+GG  G + +A   N    AE  L  +  ++ +R Y+ LQ
Sbjct: 112  EPYIKFEWLEKF-SAGVIALSGGRVGEVGQALVGNRQVDAEAALQRWIDVYPNRFYIELQ 170

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            R  R  +     + + LA  ++LP+VATN+  FL ++ ++ H+  + +     +    R 
Sbjct: 171  RTGRENEERYLHKAMALAEKYQLPVVATNDVRFLDQDLFDVHEARVCIGEGRALDDPRRE 230

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + T   YLK   EM  +FSD+PEA+ENTVEIA+RCS  +Q+    LP +   E      
Sbjct: 231  RKYTDQQYLKTAEEMQELFSDIPEAIENTVEIAKRCSIEIQLGTYFLPEYPIPEGM---- 286

Query: 306  EEENELRNKAVAGLEVR----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             E +     +  GLE R    L +         Q Y  RL FEL++I +M F GYFLIV 
Sbjct: 287  TENSFFEKISYEGLERRLKTILKEDDPDYATKKQPYLNRLKFELDIIIQMGFPGYFLIVM 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQWAK +NIPVGPGRGSGAGS+ AY L ITD+DPL++ LLFERFLNP+R+SMPDFD+D
Sbjct: 347  DFIQWAKDHNIPVGPGRGSGAGSLVAYVLDITDLDPLQYDLLFERFLNPERVSMPDFDVD 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI YV + YG + V+QIITFG++ AKA +RDV R     Y   D+L K+IP 
Sbjct: 407  FCMEKRDQVISYVADNYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPP 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   ++ +A   +   RE    D     + +++ KLEG+ R+   HA G+VI    L  
Sbjct: 467  DPGMTLT-KAFEQEEPLREFLAMDGDGQEIWDMALKLEGITRNVGKHAGGVVIAPTRLVD 525

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQR----GVKV 596
              P+Y D      VTQF+   +E+AGL+KFDFLGL+TLT++  ++  + AQR       +
Sbjct: 526  FAPLYCDESGSGLVTQFDKNDVEEAGLVKFDFLGLRTLTIIDWAVKMIDAQRTKLGDPPL 585

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+S IP DD +T+ LL    T  +FQLES GM+  +  ++PD +E++IALV+L+RPGP+ 
Sbjct: 586  DISAIPLDDAKTFALLKRAETTAVFQLESRGMKDLITRLKPDTLEEMIALVALFRPGPLQ 645

Query: 657  NIVV--YNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + NRK+G+ ++        H  + P+L+ T GVI+YQEQVMQIAQ L+GYSL  
Sbjct: 646  SGMVDDFINRKHGRAQVAYPDAKYQHECLQPILEPTYGVIVYQEQVMQIAQELAGYSLGG 705

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA+  GI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 706  ADLLRRAMGKKKPEEMAKQRSTFQDGAASKGIDPELAIKIFDLVEKFAGYGFNKSHSAAY 765

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQTAW+K H+P  F+AA+M+ +MD  +K+  F ++ R   + ++PP VN     F 
Sbjct: 766  ALVSYQTAWLKAHFPAHFMAATMSSDMDKTDKVVTFIEECRNMKLNLLPPDVNRGEFQFT 825

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  DN + Y L AIKG+G      I+ A  D   F  L DFC+RVDSKK+N+R LE+LV 
Sbjct: 826  VDDDNNVIYGLGAIKGLGEGPVEAIIAARKDGGDFKDLFDFCARVDSKKINKRALEALVR 885

Query: 888  AGALDCFGY------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---- 937
            +GALD  G        R  +  ++    K A+    N      ++F       S++    
Sbjct: 886  SGALDNLGPGIDVDYDRAVMAAAVPEAVKAAEQSAANANAGMSDLFGEVVPVASERGDAY 945

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
                     +   R   E+  LG Y +GHP+D Y   L+ +                 ++
Sbjct: 946  SEFTHVRRWSLKERLNGERDTLGLYLTGHPIDEYDEELKHLVSNRIVNLKPDRAKQ--KV 1003

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A +VV+ +  KT++G ++ +VT  +     E   F
Sbjct: 1004 AGLVVAFRVMKTKRGDKMAFVTLDDRTGRLETAVF 1038


>gi|317969748|ref|ZP_07971138.1| DNA polymerase III subunit alpha [Synechococcus sp. CB0205]
          Length = 1179

 Score = 1078 bits (2787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1059 (36%), Positives = 583/1059 (55%), Gaps = 46/1059 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++ +      PAIA+TD   ++ A+E  +    + ++P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPAMVKRAEELGMPAIALTDHGVMYGAIELLKLCRGSSVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +       + +           +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGS---IDDPNPPKKERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 118

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L E  +EGLI+ T    G I +A       VA      ++ +FGD  Y+ 
Sbjct: 119  FSRACIDKPTL-ERHSEGLIIATACLGGEIPQAILRGRPDVARDVARWYQGVFGDDFYLE 177

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++ +++    +PLVATN++ +L+  D EAHD L+ V    +V+ + 
Sbjct: 178  IQDHGSPEDRIVNVEMAKISKELGIPLVATNDAHYLTSNDAEAHDALLCVLTGKLVTDEK 237

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   ++K+  EM+ +F+D        EA+ NT  +A +      +    +PRF   
Sbjct: 238  RLRYTGTEFIKSEQEMLGLFADHLEPEVVAEAVANTALVAEKVEDYDILGRYQMPRFPIP 297

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E         + LR     GL  RL  G          Y +RL FEL V+ +M F  YFL
Sbjct: 298  EG----HTPVSYLREVTEQGLRARL--GLPEGSGFEATYGERLAFELQVMEQMGFPTYFL 351

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A+ N IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 352  VVWDYIRFARDNGIPVGPGRGSAAGSLVAYALGITNIDPVTNGLLFERFLNPERKSMPDI 411

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KL
Sbjct: 412  DTDFCIERRGEVIDYVTERYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKL 471

Query: 479  IPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L+ +  +      FRE  L DP+V R ++++ ++EG  +    HAAG+VI
Sbjct: 472  IPVVRGKPAKLKEMIGEESPAPEFREKYLGDPAVKRWVDMAMRIEGTNKTFGVHAAGVVI 531

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               PL ++VP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K++D + Q   
Sbjct: 532  AADPLDEVVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTVDLVKQSSG 590

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            V +D   +P DD  T+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRPG
Sbjct: 591  VSIDPDALPLDDEGTFGLLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPG 650

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRK+G+E I   H  ++P+L+ET G+++YQEQ+M+IAQ L+GYSL EAD
Sbjct: 651  PLDAGLIPKFINRKHGREAIDFAHAKLEPILQETYGIMVYQEQIMKIAQDLAGYSLGEAD 710

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM K ++ F+ GAS+ G+   IA  +F+ +  FA+Y FNKSH+ AY  
Sbjct: 711  LLRRAMGKKKVSEMQKHRDIFVKGASERGVDAKIADELFDQMVLFAEYCFNKSHSTAYGA 770

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K HYPV ++AA +T+   + +K++++  +     I++MPP VN   +DF   
Sbjct: 771  VTYQTAYLKAHYPVAYMAALLTVNAGSTDKVQRYISNCNAMGIEVMPPDVNASGIDFTPV 830

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             +RI + L+A++ +G    R ++EA  +D PF SL D C R+    LNRR LE+L+  GA
Sbjct: 831  GDRILFGLSAVRNLGEGAIRALLEARSSDGPFQSLADLCDRIPGTTLNRRSLEALIHCGA 890

Query: 891  LDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK----------- 937
            +D      +R QL+  LD I  +A    ++R +   N+F       S             
Sbjct: 891  MDALEPEANRAQLMADLDLIVDWASSRARDRASGQGNLFDLFAAPASGDAEETQGGGSDL 950

Query: 938  ---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
                          + +   E+ ++GFY S HPL      ++ +   G            
Sbjct: 951  STAPKAAPVKDYPPTEKLRLEKELVGFYLSDHPLKQLTRPVQLLSPVGLGGLEEQADKAR 1010

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +  MV   +   TRKG R+  +   + +   EA  FP
Sbjct: 1011 VSVVGMVSGLRPVTTRKGDRMAVLQLEDLSGSCEAVVFP 1049


>gi|330959213|gb|EGH59473.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. maculicola
            str. ES4326]
          Length = 1173

 Score = 1078 bits (2787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1060 (39%), Positives = 607/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A+  L  + ++F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADDLLREWLQVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173  NRTNDEEHLHAAVALAQRHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRL-----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RL      +         Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLSVLLPKETTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEAPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F V
Sbjct: 768  LVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              D RI Y L AIKGVG      I +A    PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  SDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRVNKRTLDGLIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KG 932
            ALD  G                +R  LL +L+   + A+   ++R + H ++F     + 
Sbjct: 888  ALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFVEA 947

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  DADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 Q--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|313672076|ref|YP_004050187.1| DNA polymerase iii, alpha subunit [Calditerrivibrio nitroreducens DSM
            19672]
 gi|312938832|gb|ADR18024.1| DNA polymerase III, alpha subunit [Calditerrivibrio nitroreducens DSM
            19672]
          Length = 1154

 Score = 1077 bits (2786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1040 (39%), Positives = 612/1040 (58%), Gaps = 29/1040 (2%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            KS  FVHL +HS YSLL+GA+ +N ++DK+      A+A+TD   ++  ++F +KA A  
Sbjct: 2    KSRDFVHLHLHSQYSLLDGAIQINKMMDKLKKFGSSAVAVTDHGTMYGVVDFYKKAIANN 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIGC++ +   D        +        ++LL    +G + L  LVS   L     
Sbjct: 62   IKPIIGCEVYVAPDDR--KNRNYEKGEDKNYHLILLAKNNKGLKNLQYLVSLAQLEG-FY 118

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVN 185
               RI    L +  +EGLI L+   +G I R       + A K    ++ +      Y+ 
Sbjct: 119  YKPRIDKELLAKY-SEGLIGLSACLAGEIPRYVIRGDLKEAVKSAKEYEDILSKGNFYLE 177

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ +   ++     +++ +   H++P+VATN+  +L + D+ AH +LM +   T +S +D
Sbjct: 178  LQENGIPEQRIVNRELISIGKNHDIPIVATNDCHYLEKGDHVAHQILMCIQMQTTISNRD 237

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            +     D  Y+K+  EM   FS++PEA  NT++IA  C+  + +    LP +   +    
Sbjct: 238  KLEFHSDQLYVKSPEEMWEAFSEIPEACLNTLKIAEECNVTIDLGKLHLPHYKVPKG--- 294

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                E+   + A  GL  RLA+    +    + Y  RL+FEL VI    ++GY+LIV DF
Sbjct: 295  -YTVESYFEHLARTGLHRRLARIPADEH---KKYIDRLNFELKVIIEKNYAGYYLIVWDF 350

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I ++K+N IPVGPGRGSGAGS+ AYAL ITDIDP++F+LLFERFLNP+R SMPDFDIDFC
Sbjct: 351  INYSKENGIPVGPGRGSGAGSLVAYALGITDIDPIKFNLLFERFLNPERKSMPDFDIDFC 410

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            ++RRDEVI+YV +KYG++RVAQI+TFG L A+  +RDVGR L++P   VD++ K+IP  P
Sbjct: 411  KNRRDEVIKYVIDKYGNDRVAQIVTFGQLLARGVIRDVGRVLEIPLKTVDKVAKMIPEAP 470

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A+ DD    +        + LL  ++KLEGL R    HAAGIVI D+PL + V
Sbjct: 471  GMTLE-KALKDDPDLEKNIKQIEKGEELLTNARKLEGLLRQTGMHAAGIVISDKPLIEYV 529

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIP 602
            P+ +    ++ +TQ+    +E+ GL+KFDFLGLK LT++  ++  + +R     D++ IP
Sbjct: 530  PLCKGQNDEV-LTQYEKNTLEEIGLVKFDFLGLKNLTVIDDTVKLIRRRYNNNFDINSIP 588

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--V 660
             +D +TY LL+   T G+FQLES+GM+  L+ ++P+  EDIIALV+LYRPGPI + +   
Sbjct: 589  LNDKKTYELLSNGETTGVFQLESAGMKNLLKKLRPNKFEDIIALVALYRPGPIGSGMLDD 648

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RK+G++K+    P ++P+L++T G+I+YQEQVMQIAQ+++GYSL  AD+LRRAMGKK
Sbjct: 649  FVKRKHGEQKVTYFLPELEPILQDTYGIIVYQEQVMQIAQVIAGYSLGSADLLRRAMGKK 708

Query: 721  IKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
              EEM K KE F        I GA K G    IA  IF L+ KFA+YGFNKSH+AAYA+I
Sbjct: 709  KPEEMQKHKEIFLYGSEELKIEGAKKRGFDLKIAEEIFNLMEKFAEYGFNKSHSAAYALI 768

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQTA++K HYPVE+++  ++ E+D  EK+  F ++ ++  I+++PP++N    DF + +
Sbjct: 769  SYQTAYLKAHYPVEYMSQLLSSELDKGEKVVVFIEECKRMGIKVLPPTINKSSKDFIIDE 828

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            N I + L AIK VG +    I+ A  D  F S+ DFCSRVD + +N+RV+ESL+  G  D
Sbjct: 829  NSIRFGLGAIKNVGFSAIESIVAAREDGEFKSIYDFCSRVDLRTVNKRVVESLIKTGVFD 888

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
             FG  R  LL  LD   +  Q  +KNR      +     G    +               
Sbjct: 889  EFGKKRKVLLNVLDAAIEEGQRKQKNREIGITTV-EELLGISDTEEYYPDLDEFQEHDIL 947

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+ +LGFY + HPL  Y  IL  + I    E        ++ +  ++ + +    R G
Sbjct: 948  KMEKELLGFYLTNHPLSSYSNILSTLTIGS-NELELMEEEKDVVVGGIIKNIKTHLARTG 1006

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
             ++ +VT  +    ++   F
Sbjct: 1007 EKMAFVTLEDLEGSFDIVVF 1026


>gi|167465076|ref|ZP_02330165.1| DNA polymerase III DnaE [Paenibacillus larvae subsp. larvae
            BRL-230010]
          Length = 1218

 Score = 1077 bits (2786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1057 (35%), Positives = 601/1057 (56%), Gaps = 44/1057 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL+GA  ++++ ++ A     A+A+TD   ++  + F +     GI+P
Sbjct: 3    SFVHLHVHSEYSLLDGAARIHDLTERAAELGMSALALTDHGVMYGTIAFYKACKQRGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++        +  N+ + P   +  ++LL     GY+ L++L S  +L        
Sbjct: 63   IIGCEVYFTTGSIRQKGNRQEQP---IYHLILLAKNNTGYRNLMKLCSIGHLEG-FHYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L    +EGLI L+      + +    +  + A K    ++ +FG+  Y+ +Q H
Sbjct: 119  RIDAEHLA-AHSEGLICLSACLGSEVSQHLLHDRKEDARKAAERYRSIFGEDFYLEIQDH 177

Query: 190  RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
               ++ +    +++L+    +PL+ATN+  ++ E D+E  DVL+ +     V  +DR   
Sbjct: 178  GMMEQKKVMHSMIELSRETGIPLIATNDVHYVREPDHEVQDVLICIGTGKTVEDEDRLKM 237

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   YLK R  M ++F+ +PEA+ NT ++A +C   +++   ILP F   E        
Sbjct: 238  GTSQLYLKTREAMAALFAHVPEAVLNTEKVAAQCQVEIELGHSILPSF---EPIPESLTA 294

Query: 308  ENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               L+   + G+  R     +         +   Q+L +EL+VI  M FS YFLIV DFI
Sbjct: 295  AEYLKQLCLEGISGRYGTRQEWNDPSSDFRKQVEQKLYYELDVIESMGFSDYFLIVWDFI 354

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A +  I  GPGRGS AGS+ AYAL ITD+DP+ ++LLFERFLNP+R++MPD DIDF  
Sbjct: 355  RYAHEQGIMTGPGRGSSAGSLVAYALNITDVDPIEYNLLFERFLNPERITMPDIDIDFND 414

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDEVI YV  KYG ERVAQIITFG++ AKAA+RDVGR L +PY++VD+  KLIPN   
Sbjct: 415  ERRDEVIDYVVRKYGKERVAQIITFGTMAAKAAVRDVGRVLNLPYNEVDKAAKLIPNHLG 474

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +   A+  +S  RE     P    LL +++++EG+ RHASTHAAG+VI   PL+  VP
Sbjct: 475  MTID-HALEVNSDLRELAEKQPKTAELLNMAKRVEGMPRHASTHAAGVVISRDPLTDYVP 533

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPF 603
            +        P+TQ++M+ +E  GL+K DFLGL+TL++++++L ++  Q G  VD +    
Sbjct: 534  LQEGT-EQTPLTQYSMEHLESIGLLKIDFLGLRTLSIIERTLAWIKEQEGKLVDWTQTDK 592

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D +TY LL+   T G+FQLES GMR+ L+ ++P   EDII++++LYRPGP++ I  Y  
Sbjct: 593  SDPKTYELLSRGETTGVFQLESPGMRRVLKELKPSRFEDIISVLALYRPGPMEFIPQYIA 652

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             K+ + + V  HP ++ +LK+T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E
Sbjct: 653  CKHKQTEPVYPHPSLETILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKRE 712

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +D+Q+  F+ G+   G +   A ++++++ +FADYG+ ++HA AY V+++QTA++K HY
Sbjct: 713  VLDEQRSHFVEGSLGQGFTAEEANHVYDMIVRFADYGYPRAHATAYGVLAFQTAYLKAHY 772

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-------------- 829
            P  F+A+ +T    N  K+ ++  + R+  + ++PP +N   V F               
Sbjct: 773  PRHFMASMLTAVTGNQRKMAEYVDECRRMKLDVLPPDINESGVLFTPVASPGFGTEPARY 832

Query: 830  -------------VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
                           +  I + LAAIK VG +    +++    + F SL DFC RVD + 
Sbjct: 833  AGEPAEEGMADKIPVNGAIRFGLAAIKNVGASAIEAVLKERRKETFTSLLDFCRRVDLRI 892

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             N+RV+ESL+ AGA D     R QL+  LD+  + A    K + +   ++F   +     
Sbjct: 893  CNKRVIESLIQAGAFDTLPGHRAQLVAMLDDTAEAALKWRKEKDDLQLHLFGFVEEPHW- 951

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            ++ +    +     + + E+ ++G Y SGHPLD ++ +L ++      +       + + 
Sbjct: 952  EVEVPDVPMLTKLQQLDYERELIGMYLSGHPLDAHEDLLGRLEADPLYQLQEYPDHSEVV 1011

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +A MV S +   T++G  + ++   +   + E   FP
Sbjct: 1012 VAGMVASSKTIVTKRGEPMAFMELEDRIAKVEIVLFP 1048


>gi|330878150|gb|EGH12299.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea
            str. race 4]
          Length = 1154

 Score = 1077 bits (2786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1060 (39%), Positives = 606/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F +R Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPERFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173  NRNNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA               Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVD 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +         +D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F V
Sbjct: 768  LVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              D RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  SDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KG 932
            ALD  G                +R  LL +L+   + A+   ++  + H ++F     + 
Sbjct: 888  ALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFVEA 947

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  DADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 Q--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|154706370|ref|YP_001424773.1| DNA polymerase III alpha subunit [Coxiella burnetii Dugway 5J108-111]
 gi|154355656|gb|ABS77118.1| DNA polymerase III alpha subunit [Coxiella burnetii Dugway 5J108-111]
          Length = 1143

 Score = 1077 bits (2786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1034 (40%), Positives = 622/1034 (60%), Gaps = 33/1034 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++HS YS+++  + ++ +L +    + PA+A+TD  NLF+ ++F ++A   GI+P
Sbjct: 4    SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +   D+             V     L     G++ LI+L+SR Y+  + +  V
Sbjct: 64   IIGSELLLAEGDD-------------VFRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL +   EGLI+L+G   G + +A     S +AE+RL  +   F  R Y+ LQR 
Sbjct: 111  LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
            R   +      V++LA  H +P+VATN   FLS+ D+EAH+  + +    ++   +RPR 
Sbjct: 170  RRDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPRE 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   Y K+  EM ++FSD+PEALENTVEIA+RCS  L +    LP+F       +    
Sbjct: 230  YSDQQYFKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVPANLKV---- 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+  R +A  GL  RL    +      +DY +RL+ E+ VI +M F+ YFLIVADFI WA
Sbjct: 286  EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAWA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+++IPVGPGRGSGAGS+ AY+L IT++DPL   LLFERFLN +R+SMPDFDIDFC + R
Sbjct: 346  KQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEGR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV  +YG E VAQIIT+G++ A+A LRDVGR L +PY  VD++ KL+P +    +
Sbjct: 406  DRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELGVTL 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +    +    D  V  L++++ KLEGL R+A  HA G+VI    L+  VP+Y 
Sbjct: 466  E-KALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPLYS 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIP 602
            +  SD  VTQF+   +E  GL+KFDFLGL+TLT++  ++  +  +         D+  IP
Sbjct: 525  EPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKCKIQNETELDIGTIP 584

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD +TY LL +  T  +FQLES GM++ +  +QPD   DI+ALV+L+RPGP+ + +V  
Sbjct: 585  LDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMVET 644

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K+G++ +  +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL  ADVLR AMGKK
Sbjct: 645  FIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMGKK 704

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM KQ+  F+ G    G+ + +A  IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW+K
Sbjct: 705  KPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAWLK 764

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSL 839
             HYP EF+AA ++ +MDN +K+  F  + R  N++++PP++N     F V       Y L
Sbjct: 765  AHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVYGL 824

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKGVG   A +I+    A+  F  L +FCSRVD +K+NRR +E L+ +GA+D FG SR
Sbjct: 825  GAIKGVGEAAAMNIVACREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGVSR 884

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              L +SL    + A+   ++      ++F  E     +  T  +    N S R   E+  
Sbjct: 885  ASLFESLTKAFQAAEQRNRDMILGQHDLFGEEVKGIDEDYT--EVPEWNDSDRLRGEKET 942

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG Y SGHPL      ++ +G        +    N++ +A M++  +   TR G R+  +
Sbjct: 943  LGLYVSGHPLQACIKEMKAVGAVPINHL-SLSEKNSVVVAGMMMGMRTITTRSGKRMAIL 1001

Query: 1019 TFSEPAKEYEANFF 1032
            +  +   + +   F
Sbjct: 1002 SLEDQTGKIDVTLF 1015


>gi|307243299|ref|ZP_07525466.1| DNA polymerase III, alpha subunit [Peptostreptococcus stomatis DSM
            17678]
 gi|306493317|gb|EFM65303.1| DNA polymerase III, alpha subunit [Peptostreptococcus stomatis DSM
            17678]
          Length = 1200

 Score = 1077 bits (2785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1059 (36%), Positives = 604/1059 (57%), Gaps = 50/1059 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL VH+ YSLL+G   L+ ++ ++      + AITD  ++F  ++F +K  +AGI+P
Sbjct: 8    DFCHLHVHTEYSLLDGFSRLDKLISRVKDLGMSSCAITDHGSMFGVVDFYKKCKSAGIKP 67

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +D   M ++  T       ++LL    +GY+ LI++VS  Y+ D      
Sbjct: 68   IIGCEVYLAPRD---MESKDSTLDKYSSHLILLAENNQGYKNLIKIVSDAYV-DGFYYKP 123

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R     L++  +EG+I L+   +G I +A    +   A         +F  D  ++ +Q 
Sbjct: 124  RTDKDHLRKY-SEGIICLSACLNGEIPKAILARNFDKARSLAQENIDIFGKDNFFLEVQD 182

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H+   D+   + +++L+   ++PLVATN++ ++  ED    DVLM +     +    R +
Sbjct: 183  HKLAEDKEVNAGLLKLSKEMDIPLVATNDAHYVYREDARIQDVLMCIQMQKTLDDPSRMK 242

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D +  K+R EM  +F+  PEA+ENT++IA RCS      +  +P F   E       
Sbjct: 243  FPNDEFYIKSREEMEDLFAFSPEAVENTLKIAERCSVEFDFDSYHIPTFDVPEG----YT 298

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L++    GL  R       +G   QD R RL++E++VIA M +  YFLIV DFI +
Sbjct: 299  SLTYLQHICNQGLLERY---GDEEGNVEQDLRDRLNYEIDVIANMGYIEYFLIVWDFINY 355

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +K+NNI VGPGRGS AGS+ AY L ITDIDP++++LLFERFLNP+R++MPD DIDFC +R
Sbjct: 356  SKQNNIMVGPGRGSAAGSIVAYTLKITDIDPIKYNLLFERFLNPERVTMPDIDIDFCYER 415

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI YV+ KYG + VAQIITFG++ AK A+RDVGR L + Y++VD + K IP      
Sbjct: 416  REEVIDYVKRKYGIDHVAQIITFGTMGAKLAIRDVGRVLDVAYNKVDSVAKEIPFALGMT 475

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A   +   R+    D  V  +++IS+++EG+ RHASTHAAG+VI  RP+ + VP+Y
Sbjct: 476  ID-KAFDMNPSLRKLYDGDHEVKEIIDISKEMEGMVRHASTHAAGVVISKRPVYEYVPLY 534

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV------KVDLSL 600
            ++  S    TQF M  +E+ GL+K DFLGL+TLT+++ +LD +           K+D S 
Sbjct: 535  KNQDS--ITTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIEINREKKGYKGKIDFSK 592

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            + ++D + + L++   TLG+FQLES GMR  ++ ++P+C EDI+A +SL+RPGP+D+I  
Sbjct: 593  MEYNDPKVFDLISQANTLGVFQLESGGMRNFMKQLKPNCFEDIVAGISLFRPGPMDSIPT 652

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y N KN  +++  +H  + P+L  T G ++YQEQVMQ+ + L GYSL  +D +RRAM KK
Sbjct: 653  YINCKNNPDQVTYLHEKLRPILDVTYGCLVYQEQVMQVVRDLGGYSLGRSDSVRRAMSKK 712

Query: 721  IKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
              + M+K+++ FI             G  +NG+ + +A  IF+ +  FA Y FNKSHAAA
Sbjct: 713  KMDVMEKERQYFIHGKLDENDNIEIAGCVRNGVPEDVANQIFDDMIDFAKYAFNKSHAAA 772

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y V+SY+TA++K +YPVEF+AA MT  M N +K+ ++ ++     I ++PP +N     F
Sbjct: 773  YGVLSYETAYLKCYYPVEFMAALMTSIMGNNDKVVEYMRECSSMGIGVLPPDINKSFSKF 832

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V  + I + LAA+K VG     +I+ E  A+ P+ +L D   R+DSK  N++ +ESL+ 
Sbjct: 833  SVDGDHIRFGLAAVKNVGANAIDNIVAEREANGPYKNLTDLVKRIDSKFANKKTIESLIK 892

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT----FSDKITLEKF 943
             GA D  G +R  L+ + +++       +K       ++F            +   +E  
Sbjct: 893  CGAFDSTGDNRASLMFAFEDVLDSISRDKKRNVEGQMSMFDMFADMGKQGELELGKIEGV 952

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPIL-RKMGIKGYE--------ESVATIRGNN 994
                  +R + E+ VLG Y SGHPL  Y   L +++ I            E +  I   +
Sbjct: 953  EEFRDRIRLDMEKEVLGLYVSGHPLSEYSEKLEQRISITNARINKLKEEPEKLLEINEQD 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +  M++SK+   T+    + ++   +     E   FP
Sbjct: 1013 HIIGGMIISKKLFSTKNNEMMAFINIEDLYGSMEVVVFP 1051


>gi|296447359|ref|ZP_06889286.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b]
 gi|296255138|gb|EFH02238.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b]
          Length = 1150

 Score = 1077 bits (2785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 516/1040 (49%), Positives = 687/1040 (66%), Gaps = 21/1040 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL VH+++SL EGAL+++ ++     D+ PA+AITD+NNLF ALEFS+KA  
Sbjct: 1    MSAGVGFVHLHVHTAFSLREGALTISRLIGLAEKDEMPALAITDSNNLFGALEFSEKAAK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI   QL +D  D  +             +IVL+  +  GY  LI L +  +L  +
Sbjct: 61   AGLQPIPAIQLTVDFGDGTQSLTADGRG-----NIVLIAKSEAGYANLIRLATCAWLGPE 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              ++  + +  L    +E LI LTGG  G +D        + A  RL   + LF  RLYV
Sbjct: 116  LGETPHVTMEQLSASSSE-LIALTGGPEGGLDTLLARGRPEQARARLEALEPLFDGRLYV 174

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   ++R  E Q++ LA+   LPLVA N   F + ED+EAHD L+ +A  TV    
Sbjct: 175  ELQRHGLDHERRVEPQLLDLAFRRGLPLVAANEPFFAAAEDHEAHDALLCIADGTVTGVA 234

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---EKEC 300
            +R R++P HY K R EM+++F+DLPEA  +TVEIARR +       PI+PRF+   E   
Sbjct: 235  ERRRLSPQHYFKTRKEMLALFADLPEATASTVEIARRVAVRATKRKPIMPRFMRDGEGGG 294

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + ++  E  ELR +A  GLE RLA    A G   + Y  RL FEL+ I +M+F GYFLIV
Sbjct: 295  EALEVIETRELRRQAQEGLEARLATHPPAPGQTRETYEARLAFELDTIEKMRFPGYFLIV 354

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI++AK   IPVGPGRGSGAGS+ AYALTITD+DPLRF L FERFLNP+RMSMPDFDI
Sbjct: 355  SDFIKYAKSKGIPVGPGRGSGAGSLVAYALTITDLDPLRFGLFFERFLNPERMSMPDFDI 414

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ RR+EVI YV+++YG +RVAQIITFGS  A+  LR VGR L+MP  QVD+L KL+P
Sbjct: 415  DFCQSRREEVIEYVRDRYGADRVAQIITFGSFLARGVLRSVGRVLEMPLGQVDKLAKLVP 474

Query: 481  NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +PA PVSL +A+A + + REA   D  V RL +I+  LEGLY +ASTHAAG+VI DRPL
Sbjct: 475  QNPAKPVSLAEAVAGELKLREAIAEDGKVARLFKIAGSLEGLYSNASTHAAGVVIADRPL 534

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
              LVP+YRD +SD+P TQFNMKW ++AGLIKFDFLGLKTLT+L  ++D + +R    DL+
Sbjct: 535  DTLVPLYRDPKSDMPATQFNMKWADEAGLIKFDFLGLKTLTVLATAVDLVRRRVADFDLA 594

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP +D +TY +L    T+G+FQLES+GMR+AL  M+ D  EDIIALV+LYRPGP+ NI 
Sbjct: 595  AIPLEDPQTYEMLGRGETVGVFQLESAGMRKALVDMRADHFEDIIALVALYRPGPMANIP 654

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y   K G E+   IHP I+ +LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGK
Sbjct: 655  TYCAVKLGDEEADYIHPKIEHILKETFGVIIYQEQVMQIAQVLSGYSLGEADLLRRAMGK 714

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KIK EMD Q+ERF+SGA + G+    A  IF+LLAKFADYGFNKSHAAAYA+I++QTAW 
Sbjct: 715  KIKAEMDAQRERFVSGAVERGLEPAKASEIFDLLAKFADYGFNKSHAAAYALIAFQTAWF 774

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNR 834
            K HYPVEFLAASMTL+  N +K+ +F  +AR+  I + PPS+    VDF V     G   
Sbjct: 775  KAHYPVEFLAASMTLDKGNTDKLAEFRNEARRLGIAVEPPSIRRSGVDFDVAPGADGALA 834

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I Y+L+A+KGVG   A  I+ +  D+PF  L DF  R++ +++N++VLE+L   GA D  
Sbjct: 835  IRYALSAVKGVGEGQAASIVRSRGDEPFRGLGDFARRINPREVNKKVLENLACCGAFDEM 894

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
               R +++ +++ I   A    ++R      +F    G  S+++ L K     +S + + 
Sbjct: 895  ESDRARVVGAIETILAAANRTAEDRQLGQNALFG---GGPSEELALPKAEPWTASEKLKR 951

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNN-IRLAAMVVSKQQKKTRKG 1012
            E    GF+ +GHPLD +  +L K  +  + E   A  RG    RLAA+V+ + +++T+ G
Sbjct: 952  EFDAAGFFLTGHPLDSFAGVLAKRRLTRWAEFTAAVKRGATAARLAAVVLDRAERRTKSG 1011

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            S++G V  S+ + +YEA  F
Sbjct: 1012 SKMGIVQLSDDSGQYEAILF 1031


>gi|198283301|ref|YP_002219622.1| DNA polymerase III subunit alpha [Acidithiobacillus ferrooxidans ATCC
            53993]
 gi|198247822|gb|ACH83415.1| DNA polymerase III, alpha subunit [Acidithiobacillus ferrooxidans
            ATCC 53993]
          Length = 1167

 Score = 1076 bits (2784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 434/1039 (41%), Positives = 628/1039 (60%), Gaps = 33/1039 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++P FVHL VHS YSL +G + +  +  + A    PA+AITD  NLF+ ++F   A  
Sbjct: 1    MMRTPQFVHLHVHSEYSLEDGIIPVKALARRCAERGMPAVAITDHGNLFALVKFYNAARG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++P+IG ++ +                    S+VLL     GY+ L  L+SR YL   
Sbjct: 61   QGVKPLIGSEVWVH----------DVAEPERPVSLVLLCMDKTGYRNLSRLLSRAYLEGS 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 +I ++WL E  ++GLI L+    G I RA      Q AE R   + +LF +R Y+
Sbjct: 111  RHGRPQIDVAWL-EGSSDGLIALSAAGQGEIGRA-LQRHPQQAESRARYYARLFPERFYL 168

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR+   ++    Q  V LA   +LPLVATNN+ FL   D+ A D    ++    +   
Sbjct: 169  EVQRNGEAEQEALVQATVALAEKLDLPLVATNNAHFLDAADFAAFDARQCISAGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  TP+H L +  EM   F+DLPEA +NTVEIARRC+  L +    LP +       
Sbjct: 229  RRPRRFTPEHRLPDPEEMRERFADLPEACDNTVEIARRCNMELVLGHYALPDYPIP---- 284

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +  +  L + A  GL+ RL +  I  G     Y +RL  E+ VI +M F GYFLIVAD
Sbjct: 285  ANQSVDEYLHDAAQKGLQERLQELRIT-GDATLPYHERLLREVGVIQQMGFPGYFLIVAD 343

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DP+   LLFERFLNP+R+SMPDFD+DF
Sbjct: 344  FIQWAKNNGVPVGPGRGSGAGSLVAYALRITDLDPIGNGLLFERFLNPERVSMPDFDVDF 403

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D+RD VI+YV +KYG +RV QIITFG+++A+A +RDVGR L +PY  VD+L KL+P D
Sbjct: 404  CMDQRDRVIQYVADKYGRDRVGQIITFGTMKARAVVRDVGRVLGLPYGFVDQLAKLVPGD 463

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+ +    R  +  +  V  LL+I+ +LEGL RHASTHA G+VI   PL+  
Sbjct: 464  LGMTL-AKALEESEELRRRQAEEDDVRDLLDIALRLEGLPRHASTHAGGVVISPEPLADR 522

Query: 543  VPMYRD-VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKV 596
            +P++ D       VTQ +   +EK GL+KFDFLGL+TLT++  ++  +           V
Sbjct: 523  LPLFNDGSEGGGNVTQLDKDDVEKMGLVKFDFLGLRTLTIIDMAVKLINADAAAAGRAPV 582

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+  +P DD  T+ LL +  T  +FQLESSGMR  +  +QPD  EDI+ALV+L+RPGP+ 
Sbjct: 583  DIQQLPLDDAATFALLKSTETAAVFQLESSGMRDLVRRLQPDTFEDIVALVALFRPGPLQ 642

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +V  +  RK+GK ++  +HP + P+L+ET GVI+YQEQVMQ AQ L+GYSL  AD+LR
Sbjct: 643  SGMVDDFIARKHGKAQVTYLHPDLAPILRETYGVIVYQEQVMQSAQALAGYSLGGADLLR 702

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ+  F+ GA KNG++   A  IF+L+ KFA+YGFNKSH+AAYA++SY
Sbjct: 703  RAMGKKKPEEMAKQRSIFLEGAHKNGLAADQAGAIFDLMEKFAEYGFNKSHSAAYALVSY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDN 833
            QTA++K HYP  F++A +T +MD+ +K+     +  +  ++I PPSV    ++F+  GD+
Sbjct: 763  QTAYLKAHYPQFFMSAVLTADMDHTDKVVAMIAECARMGLRIAPPSVQHSVLEFRPEGDD 822

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I + L AIKG+G    + I++A     F +L D   RVD++K+NRR LE+L+ AGA+D 
Sbjct: 823  HIRFGLGAIKGLGRAAIQAILDARRGGAFLNLFDLLCRVDTQKINRRALEALIRAGAMDD 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            +G SR  L+ S+D   + A   + ++ +  E++F+ ++        L      + +    
Sbjct: 883  WGVSRASLIASVDGCMEAAAQFQSSQASLQESLFSGQEA-LRVAPPLVSAEAWSLTETLR 941

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  LGFY SGHP+D  +  L  +G     +      G+ + +A +VV+++  +T++G 
Sbjct: 942  QERETLGFYLSGHPMDSLRDDLTALGTIPLGD---VAVGSTVLVAGLVVARRSTRTKRGD 998

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            RI ++T  +     E   F
Sbjct: 999  RIYFLTLDDGQGRLEVVVF 1017


>gi|212710382|ref|ZP_03318510.1| hypothetical protein PROVALCAL_01442 [Providencia alcalifaciens DSM
            30120]
 gi|212686964|gb|EEB46492.1| hypothetical protein PROVALCAL_01442 [Providencia alcalifaciens DSM
            30120]
          Length = 1144

 Score = 1076 bits (2784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1032 (39%), Positives = 600/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K+AA   PA AITD  NL   ++F   A  AGI+PIIG    +    
Sbjct: 1    MIDGLAKTGPLVKKVAAMGMPAFAITDFTNLCGLVKFYGAAHGAGIKPIIGADFYM---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  + +     V  + +L    EGYQ L  L+S  Y    G     I   WL +   
Sbjct: 57   ------ESEQLGDEVAHLTVLARNNEGYQNLTLLISEAYQKGYGAIGPTIHRDWLVK-HK 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + +     +  + ++ L  ++  F D  Y+ L R    D        
Sbjct: 110  EGLILLSGGRKGDVGQFLLRGNQALVDESLEFYQTYFPDAYYLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     ++   RP   +P  YL+   E
Sbjct: 170  VELATQRGLPVVATNDVCFIESSDFDAHEIRVAIHDGYTLADPKRPKNYSPQQYLRTEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEALEN+VEIA+RC+  +++    LP+F   +      E E+ L  +A  GL
Sbjct: 230  MCELFSDIPEALENSVEIAKRCNVTIRLGEYFLPKFPTGDM-----ETEDFLVMRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y +RL+ ELNVI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLKFLFPDEKVRAEKRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL   LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLELDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFEVEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D++ IP DD +++ +
Sbjct: 524  QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKNLDPIDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVNWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  G+ KNG+   +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGSIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V D     Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  + D C+RVD KK+NRRV+E L+ AGA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARQQGGIFKEIFDLCARVDIKKINRRVMEKLIMAGAFDHLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL++  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  SSLEDALKAADQHAKAEAIGQGDMFGVLAEAPEQVESSYASVPKWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP+  Y   + +       ++   T RG    +  +V+S +   T++G+RIG  T 
Sbjct: 944  YLTGHPITRYLSEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   +   F
Sbjct: 1004 DDRSGRLDIMLF 1015


>gi|161830648|ref|YP_001597182.1| DNA polymerase III, alpha subunit [Coxiella burnetii RSA 331]
 gi|161762515|gb|ABX78157.1| DNA polymerase III, alpha subunit [Coxiella burnetii RSA 331]
          Length = 1143

 Score = 1076 bits (2784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1034 (40%), Positives = 624/1034 (60%), Gaps = 33/1034 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++HS YS+++  + ++ +L +    + PA+A+TD  NLF+ ++F ++A   GI+P
Sbjct: 4    SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +   D+             V     L     G++ LI+L+SR Y+  + +  V
Sbjct: 64   IIGSELLLAEGDD-------------VFRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL +   EGLI+L+G   G + +A     S +AE+RL  +   F  R Y+ LQR 
Sbjct: 111  LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
            R   +      V++LA  H +P+VATN   FLS+ D+EAH+  + +    ++   +RPR 
Sbjct: 170  RRDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPRE 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   Y K+  EM ++FSD+PEALENTVEIA+RCS  L +    LP+F       +    
Sbjct: 230  YSDQQYFKSAEEMKALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVPANLKV---- 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+  R +A  GL  RL    +      +DY +RL+ E+ VI +M F+ YFLIVADFI WA
Sbjct: 286  EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAWA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+++IPVGPGRGSGAGS+ AY+L IT++DPL   LLFERFLN +R+SMPDFDIDFC + R
Sbjct: 346  KQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEGR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV  +YG E VAQIIT+G++ A+A LRDVGR L +PY  VD++ KL+P +    +
Sbjct: 406  DRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELGVTL 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +    +    D  V  L++++ KLEGL R+A  HA G+VI    L+  VP+Y 
Sbjct: 466  E-KALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPLYS 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKVDLSLIP 602
            +  SD  VTQF+   +E  GL+KFDFLGL+TLT++  ++  +      Q   ++D+  IP
Sbjct: 525  EPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKRKIQNETELDIGTIP 584

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD +TY LL +  T  +FQLES GM++ +  +QPD   DI+ALV+L+RPGP+ + +V  
Sbjct: 585  LDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMVET 644

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K+G++ +  +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL  ADVLR AMGKK
Sbjct: 645  FIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMGKK 704

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM KQ+  F+ G    G+ + +A  IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW+K
Sbjct: 705  KPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAWLK 764

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSL 839
             HYP EF+AA ++ +MDN +K+  F  + R  N++++PP++N     F V       Y L
Sbjct: 765  AHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVYGL 824

Query: 840  AAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKGVG   A +I+    A+  F  L +FCSRVD +K+NRR +E L+ +GA+D FG SR
Sbjct: 825  GAIKGVGEAAAMNIVAYREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGVSR 884

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              L +SL    + A+   ++      ++F  E     +  T  +    N S R   E+  
Sbjct: 885  ASLFESLTKALQAAEQRNRDMILGQHDLFGEEVKGIDEDYT--EVPEWNDSDRLRGEKET 942

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG Y SGHPL      ++ +G        +    N++ +A M++  +   TR G R+  +
Sbjct: 943  LGLYVSGHPLQACIKEMKAVGAVPINHL-SLSEKNSVVVAGMMMGMRTITTRSGKRMAIL 1001

Query: 1019 TFSEPAKEYEANFF 1032
            +  +   + +   F
Sbjct: 1002 SLEDQTGKIDVTLF 1015


>gi|254419705|ref|ZP_05033429.1| DNA polymerase III, alpha subunit subfamily, putative [Brevundimonas
            sp. BAL3]
 gi|196185882|gb|EDX80858.1| DNA polymerase III, alpha subunit subfamily, putative [Brevundimonas
            sp. BAL3]
          Length = 1153

 Score = 1076 bits (2784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 498/1037 (48%), Positives = 680/1037 (65%), Gaps = 24/1037 (2%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S  FVHL+V S+YSLLEGA+    +    A    PA+AI D  NLF ALEFSQ    AG
Sbjct: 6    NSQGFVHLRVRSAYSLLEGAIKAGKLGKLAADAGMPAVAIADRTNLFGALEFSQYTRDAG 65

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +QPII C L +       +       +   P++VLLV    G++ L  L S  YL     
Sbjct: 66   VQPIIACALPV-----FGIGGHQAVRWAKTPTVVLLVQNEAGWRNLCALSSSAYLDAGEM 120

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +    +    +EGLI+L+GG  GP+D  F    +      L T K  FGDR YV L
Sbjct: 121  AEPGVAWDQVV-ARSEGLILLSGGPDGPVDPLFAQGKTNEGAAALATMKSAFGDRFYVEL 179

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH   D  R E  +V+ AY HE PLVATN+  +      ++HD L+ +A      Q+DR
Sbjct: 180  QRHGLEDEKRAEPGLVEWAYAHETPLVATNDVYYAKAAQAKSHDALLCIADGAFTGQEDR 239

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R+T +H+ K+   M  +F+DLPEA +NT++IARRC+F++  HAPILPRF         +
Sbjct: 240  RRITGEHWFKSAEAMRDLFADLPEACDNTIDIARRCAFLVNTHAPILPRFDTGAG----R 295

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E +EL ++A  GL+VRL  G I       +Y  RL++E+ +I +M F GYFLIV+DFI+
Sbjct: 296  SEADELAHQAREGLKVRL--GQITPAVPEAEYWSRLEWEVGIIQQMGFPGYFLIVSDFIK 353

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK++ IPVGPGRGSGAGS+ A++LTITD+DPLRF LLFERFLNP+R+SMPDFDIDFCQ+
Sbjct: 354  WAKEHGIPVGPGRGSGAGSLVAWSLTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQE 413

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI YVQ++YG +RVAQIITFG+LQA+A LRDVGR LQMP  QVDRLCK++PN+PA+
Sbjct: 414  RREEVIDYVQDRYGKDRVAQIITFGTLQARAVLRDVGRVLQMPLGQVDRLCKMVPNNPAN 473

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            PV+L QAI  + R +EAR A+P+V  LLE + +LEGLYR+ASTHAAGIVIGDRPL +LVP
Sbjct: 474  PVTLAQAIDLEPRLKEARDAEPAVRTLLETALELEGLYRNASTHAAGIVIGDRPLVELVP 533

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +Y+D RS +P +QFNMKW+E AGL+KFDFLGLKTLT+L ++  +L +RG   D + +P D
Sbjct: 534  LYQDPRSTIPASQFNMKWVEPAGLVKFDFLGLKTLTVLDRARGYLERRGAAQDWNGLPLD 593

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY L+ +  T+G+FQLES GMR  L  M+   IE+I AL+SLYRPGP++ I  Y +R
Sbjct: 594  DARTYELMASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMEMIDTYIDR 653

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K G+ ++  +HP +  +L ET GVIIYQEQVM+IAQ+L+GYSL EAD+LRRAMGKK KEE
Sbjct: 654  KFGRAEVDYLHPSLKEVLTETYGVIIYQEQVMKIAQILAGYSLGEADLLRRAMGKKKKEE 713

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MD Q+ RF+ GA +  + +T + +IF+L+AKFA YGFNKSHAAAYA+IS+QT W+K ++P
Sbjct: 714  MDFQRARFVKGALEKTVPETQSGSIFDLVAKFAGYGFNKSHAAAYALISFQTGWLKANHP 773

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY----YSLA 840
            VEF AASM+L++ N +K+  F QDA++F++ ++PP +N    DF V  +       Y+L 
Sbjct: 774  VEFFAASMSLDLSNTDKLAVFYQDAKRFDVPVLPPDLNRSSADFDVAWDDSRGVVLYALG 833

Query: 841  AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AI+ VG    +H++E       F  + DF  RVD + +N+R LE L  AGA D    +R 
Sbjct: 834  AIRNVGLEAMKHVIEVRETGGRFADIFDFLERVDPRSVNKRALEGLAKAGAFDSIHPNRR 893

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            QL++  D +  Y Q V   R +   ++F  ++     +  L+         R ++E   +
Sbjct: 894  QLVEQADVLMAYCQSVAAERASSQVSLFGGDQAHVG-RPRLKSVEPWVGPERLDHELSAV 952

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAMVVSKQQKKTRK-GSRIG 1016
            GFY SGHPLD     L++  +    E++     G+   ++A +V  KQ++ + + G +  
Sbjct: 953  GFYLSGHPLDEMTSALKRKRVTFVAEAIPLAESGHEAFQMAGVVRRKQERASARTGEKFA 1012

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +VTFS+P  E+E   FP
Sbjct: 1013 FVTFSDPTGEFEC-LFP 1028


>gi|219871559|ref|YP_002475934.1| DNA polymerase III subunit alpha [Haemophilus parasuis SH0165]
 gi|219691763|gb|ACL32986.1| DNA polymerase III subunit alpha [Haemophilus parasuis SH0165]
          Length = 1158

 Score = 1076 bits (2783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1046 (39%), Positives = 603/1046 (57%), Gaps = 38/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S++ G   +  ++    A+   A+A+TD  N    + F  +A  +G
Sbjct: 2    SQPRFVHLKVHSDFSMINGLAKVKPLIKACVANNMVAMALTDFTNFCGLVRFYGEALGSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI+G  + +  +   +           +  + LL     GY  +  L+S+ Y     +
Sbjct: 62   VKPIVGADVMVRPEPESE----------ELYELTLLAKNNTGYHNITLLLSKAYQQGYVE 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  +WL E   EG+I+L+GGS+G + +A    + Q AE+ L  +++ F +  Y++L
Sbjct: 112  F-PVVEKAWLAE-HNEGVILLSGGSNGDVGKALLKENQQEAEQLLAFYQRYFHNHYYLSL 169

Query: 187  QRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R   Q V  +    +PLVA N+ +FL + D+EAH++ +A+  S  +    R
Sbjct: 170  CRTGRSDEERYIQQAVTFSQKFAIPLVAVNDVMFLKQNDFEAHEIRVAIHDSFTLDDPKR 229

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   Y ++  EM  +F+DLP+A+ENT+ IA+RC+  +++    LP F   +     
Sbjct: 230  PQKYSEQQYFRSEDEMCQLFADLPQAIENTLFIAQRCNVTIRLGEYFLPNFPTGDL---- 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  KA  GLE RLA        +      Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  -STEDFLVKKAKEGLEERLAFLFPDPDVRASKRSVYDERLQVELDVINQMGFPGYFLIVM 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 345  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLIP 
Sbjct: 405  FCMDGRDRVIEHVSETYGCQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPP 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E    D  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 465  DPGMTL-AKAFEAEPKLPELYDTDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTAITD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR        V
Sbjct: 524  FSPLYCDSYGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLEKEGKPPV 583

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD +T+ LL    T  +FQLES GM+  +  +QP   EDIIALV+L+RPGP++
Sbjct: 584  RIESIPLDDEKTFKLLKAAKTTAVFQLESRGMKDLISRLQPSNFEDIIALVALFRPGPLE 643

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+GKE I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 644  SGMVQNFIDRKHGKEPIAYPDAQYQHESLQPILEPTYGIIVYQEQVMQIAQVLAGYTLGG 703

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM  Q+  F  GA K GI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 704  ADLLRRAMGKKKPEEMAAQRATFEEGAKKQGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 763

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT EMDN +KI  F  +     + ++PP +N+    F 
Sbjct: 764  ALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDINSGKHRFS 823

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V +     Y L AIKGVG      ++EA   D  F  L D  +RVD +K+NRR  E L+ 
Sbjct: 824  VNEKGEIVYGLGAIKGVGEGPIDAMLEARNKDGIFKDLFDLTARVDLRKVNRRTFEGLIM 883

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946
            AGA D  G  R  L+++L++  + +    K       ++F     T  + +         
Sbjct: 884  AGAFDKLGPHRAALMKNLEDALRASDQHNKMEALGQSDMFGVLTETPEEVQNAYANTPKW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                  +NE+  LG Y SGHP+  +   L         E   T RG    +A +++  + 
Sbjct: 944  TEQTILDNEKATLGLYLSGHPVGRFLKELAHYAPNKLNEVQPTYRGQTTTVAGLIMGARI 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+KGSRIG  T  + + + +   F
Sbjct: 1004 ATTKKGSRIGIATIEDRSGKMDLTLF 1029


>gi|313895480|ref|ZP_07829036.1| DNA polymerase III subunit alpha [Selenomonas sp. oral taxon 137 str.
            F0430]
 gi|312975606|gb|EFR41065.1| DNA polymerase III subunit alpha [Selenomonas sp. oral taxon 137 str.
            F0430]
          Length = 1130

 Score = 1076 bits (2783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1032 (36%), Positives = 595/1032 (57%), Gaps = 26/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+GA  +  ++ +       +IAITD   ++ A+ F ++A A GI P
Sbjct: 2    SFVHLHVHTEYSLLDGASRIKELVQRTKELGMDSIAITDHGVMYGAIAFYKEAMAQGIHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  Q   +   + +        ++LL     GY+ L+ LVS   +        
Sbjct: 62   IIGCEVYVAPQSRHE---RAEVDGVRYYHLILLAENEIGYRNLVRLVSLANIEG-YYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L++   EG+I L+   +G I R+      +  ++ L  +  +F  D  ++ LQ 
Sbjct: 118  RVDKDLLRQYH-EGIIALSACVAGEIPRSILRGDPERTDEILAEYVDIFGRDNFFLELQD 176

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +       +  L+  H++ LVATN+  ++  ED E HD+L+ V     ++  +R R
Sbjct: 177  HGLPEEKTVNHALRDLSKKHDIGLVATNDIHYVRAEDSEFHDILLCVQTGRTINDPNRMR 236

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + PD+YLK+ +EM ++F D P A+ENT +IA RC          LP +   E      +
Sbjct: 237  FSGPDYYLKSEAEMTALFHDYPGAVENTAKIAARCRVDFTFGELQLPFYPIPEK---FAD 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            ++  LR      L  R ++          + R RLD+EL VI  M ++ YFLIV DFI +
Sbjct: 294  DDAYLRTLCEERLPERYSE-------ITNEIRSRLDYELGVIHGMGYASYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ + + VGPGRGS AGS+ AY L IT+IDPLR++LLFERFLNP+R+SMPD DIDF    
Sbjct: 347  ARGHGVAVGPGRGSAAGSIVAYLLGITNIDPLRYALLFERFLNPERVSMPDIDIDFDDIN 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R  VI YV+ +YG + VAQI TFG++ AK A+RDVGR L+M +S+V  + KL+P++    
Sbjct: 407  RGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVGRVLEMSFSEVSNITKLVPSELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ + + FR     D SV R++++++K+EGL R+ S HAAG+VI   PL+  VP++
Sbjct: 467  ID-RALKESADFRRLYDEDESVRRVIDLARKIEGLPRNTSIHAAGVVIAKEPLTNHVPVW 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
              +     VT+F+   +E  GL+K DFLGL+TL++++ +L  +    G+ +D+  IP +D
Sbjct: 526  --ISEGTLVTEFDKDDVEALGLLKMDFLGLRTLSIIEDALKNIRTSHGIDIDIDNIPLED 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
              T  +L    T  +FQ+ES+GM   ++ +QP    D+I  V+LYRPGP+ + +V  + +
Sbjct: 584  DLTAQMLCDGDTGAVFQMESAGMTNLVKDLQPKGFVDLIPTVALYRPGPLGSGMVTDFID 643

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
              +GK+++V +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK   
Sbjct: 644  GLHGKKEVVYMHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKKKHA 703

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  QKE F++G + NGI   +A +IF+LL  FADYGFNKSH+A+Y ++++QTA++K HY
Sbjct: 704  LLMAQKESFLAGCANNGIDAPLANHIFDLLTHFADYGFNKSHSASYGLLAWQTAYLKAHY 763

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+A  +T  MD  +KI  + +   Q  I+I+PP +N+    F +    I + LAA++
Sbjct: 764  PVEFMAGVLTSIMDKTDKIPVYIRLCHQMKIRILPPDINSSAATFSIESGAIRFGLAAVR 823

Query: 844  GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      +     +  PF SL DFC+RVD + LN+R +ESL+  GA D  G  R  LL
Sbjct: 824  NVGENAIAVLEHVREEGGPFRSLVDFCTRVDLRTLNKRAIESLIKCGAFDSLGIDRNHLL 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQRVLGF 961
             SL+     A   +++  +    +F  +      +I   +   +     R   E+   GF
Sbjct: 884  ASLNAAVTDAARRQRDLLSGQIGLFGDDAMAEVQQIGDFDDVPLCTPRERLTWEKEATGF 943

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y +GHPL+ Y+  L  +   G   +        +R+  ++ S ++  T+KG  + +    
Sbjct: 944  YITGHPLEDYQETLSHLQPIGQIAAAVQRDRQLMRVGGILTSTKRFTTKKGDTMLFADLE 1003

Query: 1022 EPAKEYEANFFP 1033
            +     E   FP
Sbjct: 1004 DFTGTLEVTVFP 1015


>gi|260576275|ref|ZP_05844267.1| DNA polymerase III, alpha subunit [Rhodobacter sp. SW2]
 gi|259021543|gb|EEW24847.1| DNA polymerase III, alpha subunit [Rhodobacter sp. SW2]
          Length = 1144

 Score = 1076 bits (2783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 513/1039 (49%), Positives = 681/1039 (65%), Gaps = 32/1039 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SP F+HL+VH+ +SLLEGA+ +  ++    A   PA+AITDTNN+F+ALEFS  A +AG
Sbjct: 2    SSPRFIHLRVHTEHSLLEGAVPVQKLIGLCVAQSMPAVAITDTNNMFAALEFSTYAASAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +QPIIGCQ+ +           G+ P    P IVLL  +  GY  L++L + +Y+  +  
Sbjct: 62   VQPIIGCQVSLAH----DPAGPGERPRAAAP-IVLLAQSEAGYLNLMKLNTCLYI-GKAG 115

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q  ++ ++ L      GLI LTGG  GP+ R         A+  L     ++  RLY+ L
Sbjct: 116  QLPQLTVAELA-AHARGLICLTGGPDGPLGRFLQAGQRPKAQALLEKLAAIYPGRLYIEL 174

Query: 187  QRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            QRH G        +R  E  +V++AY   LPLVATN+  F     YEAHD L+ +A    
Sbjct: 175  QRHPGAGEQLPEAERASERGLVEMAYAMGLPLVATNDVYFPKAAMYEAHDALLCIAEGAY 234

Query: 240  VSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            V Q+  R R+TP HY K  +EM ++F+DLPEALEN+VEIARRC+F +    PILP+F + 
Sbjct: 235  VDQQGPRRRLTPQHYFKTEAEMATLFADLPEALENSVEIARRCAFKVAKRDPILPKFADD 294

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E +        ELR +A  GL  RLA   I       +Y  RL FEL +I +MKF GYFL
Sbjct: 295  EVE--------ELRRQAGEGLAARLA--IIPHAVPVAEYEARLAFELGIIEKMKFPGYFL 344

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFI+WAK   IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMPDF
Sbjct: 345  IVADFIKWAKGQGIPVGPGRGSGAGSLVAYALTITDLDPLRYKLLFERFLNPERVSMPDF 404

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC DRR EVI YVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL K+
Sbjct: 405  DIDFCMDRRQEVIEYVQQKYGRDKVGQIITFGALLSKAAIRDVGRVLQMPYGQVDRLSKM 464

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   PVS+ +A+AD+ R REA   +  V RLL+  Q++EGL R+ASTHAAG+VIGDR
Sbjct: 465  IPVEGVKPVSITKALADEPRLREA-AKEEVVARLLDYGQQIEGLLRNASTHAAGVVIGDR 523

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            PL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q +L+ LAQRG+ +D
Sbjct: 524  PLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNALELLAQRGIDID 583

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +SLIP DD +TY L  +  T+ +FQ+ESSGM  AL  M+P CIEDI+ALV+LYRPGP++N
Sbjct: 584  ISLIPLDDAKTYELYASARTVAVFQVESSGMMDALRRMKPTCIEDIVALVALYRPGPMEN 643

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y   KNG  +I SIHP ID +L ETQG+I+YQEQVM+I Q+++GYSL  AD+LRRAM
Sbjct: 644  IPTYCEVKNGLRQIESIHPTIDHILAETQGIIVYQEQVMEIGQVMAGYSLGGADLLRRAM 703

Query: 718  GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            GKKI  EM K++ +FI GA+K +G+SK  A  +F+LL KFA+YGFNKSHAAAYAV+SYQT
Sbjct: 704  GKKIAAEMAKERPKFIEGAAKTHGVSKEKAGEVFDLLEKFANYGFNKSHAAAYAVVSYQT 763

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            AW+K ++PVEF+A  M  ++   +K+  + ++  +  I+ + P VN     F V D  + 
Sbjct: 764  AWLKANHPVEFMAGVMNCDIHLTDKLAVYKREVDKLGIRTVAPCVNASLASFSVRDGAVV 823

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            Y+L A+K VG    + I EA   KPF SL D   RVD K++ +R LE L  AGA D    
Sbjct: 824  YALGALKNVGVEAMKLITEARGAKPFASLFDLARRVDLKRIGKRPLEMLARAGAFDVLDS 883

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R ++  +LD +  Y+  + + R +   ++F  E G    +  L          R   E 
Sbjct: 884  NRARVFDALDALGSYSAAIHEARNSNQVSLFG-EAGADLPEPRLPFRDDWLPVERLSQEH 942

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN---IRLAAMVVSKQQKKTRKGS 1013
            + +GFY SGHPLD Y   L++  +    E       N+    ++A  V S+Q+KK+ KG+
Sbjct: 943  QAIGFYLSGHPLDDYMGPLKRKQVMTLHELHLRATENSPLIAKIAGSVASRQEKKSAKGN 1002

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            R  +V+ S+P   YE   F
Sbjct: 1003 RFAFVSLSDPTGLYEVTVF 1021


>gi|153208946|ref|ZP_01947159.1| DNA polymerase III, alpha subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|212218747|ref|YP_002305534.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuK_Q154]
 gi|120575604|gb|EAX32228.1| DNA polymerase III, alpha subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|212013009|gb|ACJ20389.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuK_Q154]
          Length = 1143

 Score = 1076 bits (2783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1034 (40%), Positives = 624/1034 (60%), Gaps = 33/1034 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++HS YS+++  + ++ +L +    + PA+A+TD  NLF+ ++F ++A   GI+P
Sbjct: 4    SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +   D+             V     L     G++ LI+L+SR Y+  + +  V
Sbjct: 64   IIGSELLLAEGDD-------------VFRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL +   EGLI+L+G   G + +A     S +AE+RL  +   F  R Y+ LQR 
Sbjct: 111  LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
            R   +      V++LA  H +P+VATN   FLS+ D+EAH+  + +    ++   +RPR 
Sbjct: 170  RRDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPRE 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   Y K+  EM ++FSD+PEALENTVEIA+RCS  L +    LP+F       +    
Sbjct: 230  YSDQQYFKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVPANLKV---- 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+  R +A  GL  RL    +      +DY +RL+ E+ VI +M F+ YFLIVADFI WA
Sbjct: 286  EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAWA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+++IPVGPGRGSGAGS+ AY+L IT++DPL   LLFERFLN +R+SMPDFDIDFC + R
Sbjct: 346  KQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEGR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV  +YG E VAQIIT+G++ A+A LRDVGR L +PY  VD++ KL+P +    +
Sbjct: 406  DRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELGVTL 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +    +    D  V  L++++ KLEGL R+A  HA G+VI    L+  VP+Y 
Sbjct: 466  E-KALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPLYS 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKVDLSLIP 602
            +  SD  VTQF+   +E  GL+KFDFLGL+TLT++  ++  +      Q   ++D+  IP
Sbjct: 525  EPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKRKIQNETELDIGTIP 584

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD +TY LL +  T  +FQLES GM++ +  +QPD   DI+ALV+L+RPGP+ + +V  
Sbjct: 585  LDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMVET 644

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K+G++ +  +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL  ADVLR AMGKK
Sbjct: 645  FIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMGKK 704

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM KQ+  F+ G    G+ + +A  IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW+K
Sbjct: 705  KPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAWLK 764

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSL 839
             HYP EF+AA ++ +MDN +K+  F  + R  N++++PP++N     F V       Y L
Sbjct: 765  AHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVYGL 824

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKGVG   A +I+    A+  F  L +FCSRVD +K+NRR +E L+ +GA+D FG SR
Sbjct: 825  GAIKGVGEAAAMNIVACREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGVSR 884

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              L +SL    + A+   ++      ++F  E     +  T  +    N S R   E+  
Sbjct: 885  ASLFESLTKAFQAAEQRNRDMILGQHDLFGEEVKGIDEDYT--EVPEWNDSDRLRGEKET 942

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG Y SGHPL      ++ +G        +    N++ +A M++  +   TR G R+  +
Sbjct: 943  LGLYVSGHPLQACIKEMKAVGAVPINHL-SLSEKNSVVVAGMMMGMRTITTRSGKRMAIL 1001

Query: 1019 TFSEPAKEYEANFF 1032
            +  +   + +   F
Sbjct: 1002 SLEDQTGKIDVTLF 1015


>gi|88857962|ref|ZP_01132604.1| DNA polymerase III subunit alpha [Pseudoalteromonas tunicata D2]
 gi|88819579|gb|EAR29392.1| DNA polymerase III subunit alpha [Pseudoalteromonas tunicata D2]
          Length = 1163

 Score = 1076 bits (2783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1050 (39%), Positives = 604/1050 (57%), Gaps = 42/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PSFVHL+VHS +S+++G      I+ K A    PA+AI+D  NL   + F      AGI+
Sbjct: 4    PSFVHLRVHSDFSMVDGLAKTKKIVAKAAEYAMPALAISDQMNLCGLVRFYDGCHYAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+   + +   D              +  + ++    +GY+ L  L+S+ YL       
Sbjct: 64   PIVAADIWLLSPDFP----------DEMCRLTVIAKNNQGYKNLTLLISKAYLRGHVMHR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   WL E+  EGLI+L+G   G + +A    +  + +     +++ F D  ++ L R
Sbjct: 114  PMVDRDWLVEL-KEGLILLSGAKDGDLGKALLKGNPSLIDSVSGFYQREFADHYFLELVR 172

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
              R  +       V  +Y   +P+VATN  +FL +ED+E H++ +A+     +    RP 
Sbjct: 173  TERPQEEEYLHLAVAHSYQTGIPVVATNEVVFLHKEDFEPHEIRVAIHDGYTLDDNRRPK 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R +   Y K  ++M  +FSD+PEAL N+VEIA+RC+  +Q+    LP +   +       
Sbjct: 233  RYSEQQYFKTEAQMCEVFSDIPEALANSVEIAKRCNVTIQLGTYFLPDYPTGKL-----T 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L   +  GLE RL       + +    ++Y +RL  EL+VI +M F GYFLIV +F
Sbjct: 288  IEDFLVKVSEDGLEERLQILFPDPVKRVEQRKEYDERLKIELDVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL+F LLFERFLNP+R+SMPDFDIDFC
Sbjct: 348  IQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLQFDLLFERFLNPERVSMPDFDIDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VD++ KLIP DP
Sbjct: 408  MDRRDEVIDHVSALYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDKISKLIPGDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + R  E    D  V  L++  + LEG  R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAFEVEPRLPEIYDTDDEVKELIDKCRILEGCTRNAGKHAGGVVISPTTITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDL 598
             +Y D     PVTQF+   +E AGL+KFDFLGL+TLT+LQ ++     R        +D+
Sbjct: 527  AIYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWAVQMANTRLAREGKESIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            +LIP DD +++ LL    T  +FQLES GM+  +  ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  TLIPLDDPKSFELLLRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL  AD
Sbjct: 647  MVDNFIDRKHGREEVSYPDAQYQHESLAPILEPTYGIILYQEQVMQIAQVLAGYSLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F SGA  N +   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  LLRRAMGKKKPEEMAKQRSTFESGAIGNNVDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT WMKTH+P EF+AA M+ +MDN +KI     +     + ++PP VN     F V 
Sbjct: 767  VSYQTLWMKTHFPAEFMAAVMSADMDNTDKIVTLVDECENMKLTLLPPDVNFGEYKFTVN 826

Query: 832  -DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  I Y + AIKGVG      I+EA     PF  L DFC+RVD K++NRRV E L+ AG
Sbjct: 827  LDGAIVYGIGAIKGVGEAPVDAILEARQSGGPFRDLFDFCARVDLKRVNRRVAEKLIMAG 886

Query: 890  ALDCFGY-----SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKF 943
            ALD  G      +R  L+ +L +  K A+   K       ++F       +D +      
Sbjct: 887  ALDNLGPKKVQGARSILIATLKDAMKSAEQHHKAAAIGQSDLFGLLAEESNDVEHVFVSA 946

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                 +   + E+  LG Y +GHP++ Y+  L+        +   T R  +  +A +V+S
Sbjct: 947  PFFTDNEWLDGERETLGLYLTGHPINQYRKELKHYTAGRLVDVQPTERDVSATVAGLVIS 1006

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +    +KG R G +T  + +   +  FFP
Sbjct: 1007 TRVLVNKKGKRWGLITLDDKSARMDVRFFP 1036


>gi|302385506|ref|YP_003821328.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
 gi|302196134|gb|ADL03705.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
          Length = 1160

 Score = 1076 bits (2782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1047 (35%), Positives = 572/1047 (54%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +  ++ +       ++AITD   ++  ++F + A   GI+P
Sbjct: 2    AFTHLHVHTEYSLLDGSCKIKELVARAKELGMDSMAITDHGVMYGVIDFYRAAREVGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +           G         +VLL    +GYQ L+++VS+ ++ D      
Sbjct: 62   IIGCEVYVTSGSRFDRETAGGE--DRYYHLVLLAENNQGYQNLMKIVSKGFV-DGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L+E  +EG+I L+   +G + R       +   +  L ++++F  +  ++ LQ 
Sbjct: 119  RVDYEVLREY-SEGIIALSACLAGEVQRLVSRGLYEKGMEAALRYQEIFGKENFFLELQD 177

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +   +Q ++++++   + LVATN+  +   ED   HD+L+ +     V+ ++R R
Sbjct: 178  HGIPAQNTVNQGLLRMSHETGIQLVATNDIHYTYAEDATPHDILLCIQTGKKVADENRMR 237

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y K+  EM ++FS   EA++NT  IA RC+  ++     LP++   E  D    
Sbjct: 238  YEGGQYYCKSEDEMRTLFSYAGEAIDNTHRIAERCNVEIEFGVTKLPKYDVPEGYD---- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L    + G                   ++RLD+EL+VI  M +  YFLIV DFI +
Sbjct: 294  SWSYLNKLCLDGFHRHYPLDDGT-------LKERLDYELDVIHSMGYVDYFLIVWDFIHY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I VGPGRGS AGS+ +Y L IT+IDP+R++LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  ARSQDIIVGPGRGSAAGSIVSYCLGITNIDPIRYNLLFERFLNPERISMPDIDVDFCFER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG ++V QI+TFG+L AK  +RDVGR L M Y++ D + K+IP D    
Sbjct: 407  RQEVIDYVVQKYGKDQVVQIVTFGTLAAKGVVRDVGRVLDMSYARCDSIAKMIPGDLGMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+      R A   DP V  L+++S +LEGL RH S HAAG+VI    + + VP+ 
Sbjct: 467  LE-KALRQSPDLRNAYEGDPEVKYLIDMSMRLEGLPRHTSMHAAGVVISRTSVDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
            R        TQF M  +E+ GL+K DFLGL+TLT++Q ++  +   R + +D+  I ++D
Sbjct: 526  RAA-DGTITTQFPMTTLEELGLLKMDFLGLRTLTVIQNAVKAIEKNRNLSLDMDRIDYND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                  + T    G+FQLESSGM+  ++ ++P+ +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 585  KAVLDSIGTGRDDGVFQLESSGMKSFMKELKPESLEDIIAGISLYRPGPMDFIPKYLKGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N +  I      ++P+L  T G I+YQEQVMQI + L+GY++  +D++RRAM KK    M
Sbjct: 645  NDRSSITYECKQLEPILNPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSKKKTYVM 704

Query: 726  DKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K+++ F+ G  +        NGI + IA  I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 705  EKERQNFVYGNPEEEVTGCISNGIDEKIANQIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YP EF+AA +T  MDNV K+ ++    RQ  I I+PP +N     F V    I Y
Sbjct: 765  FLKYYYPEEFMAALLTSVMDNVSKVSEYILSCRQMGIPILPPDINEGESGFSVSGRSIRY 824

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+AIK VG +    I+     +  F  +EDF  R+ +K++N+R LE+ + +GALD    
Sbjct: 825  GLSAIKSVGKSVVELIVAEREQNGLFHDMEDFIDRMSNKEVNKRTLENFIKSGALDTLPG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q L +   + +      KN       +F  A E+     ++T               
Sbjct: 885  TRKQKLLTAPELLEQRSKERKNTMEGQMTLFDIAGEEEKTHFQVTFPDVGEFLKEDLLAF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQQ 1006
            E+  LG Y SGHP++ Y+   R        E              G+ + +  M+  K  
Sbjct: 945  EKETLGIYLSGHPMEAYETTWRNHITATTIEFVVDEETGKAGVPDGSYVTVGGMITGKTV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K TR    + ++T  + A   E   FP
Sbjct: 1005 KTTRNNKMMAFITLEDLAGAVEVIVFP 1031


>gi|262197244|ref|YP_003268453.1| DNA polymerase III subunit alpha [Haliangium ochraceum DSM 14365]
 gi|262080591|gb|ACY16560.1| DNA polymerase III, alpha subunit [Haliangium ochraceum DSM 14365]
          Length = 1174

 Score = 1076 bits (2782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1057 (38%), Positives = 610/1057 (57%), Gaps = 46/1057 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL +H+ YSLL+GA+ + ++  K+      ++A+TD  N+F A++    A   G++ 
Sbjct: 3    AFTHLHLHTQYSLLDGAIRVKDLFPKVLELGMDSVAVTDHGNMFGAVDLYTAAREHGVKM 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I GC+  I   D    TN+          +VLL     GY+ L  L S  YL      + 
Sbjct: 63   IFGCETYIAASDRFDRTNR------RSYHMVLLAKDQVGYKNLSFLNSMGYLEG-FYYNP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI    L+E  +EGLI ++    G + +      +  AE   L ++ +F     Y+ +  
Sbjct: 116  RIDKKILRE-HSEGLIGMSACLGGEVAQTLLKQGTAEAEAVALEYQDIFGKGNFYLEMMG 174

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            ++  ++ +  + + +++    +PLVATN+  ++S++D  AH++L+++      S   R R
Sbjct: 175  NQLEEQQQLNADLKRMSRKLGIPLVATNDCHYVSQQDAHAHEILLSIQTGKTTSDDKRLR 234

Query: 248  VTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             T D ++LKN +EM   FSD+PEA+ENTV+IARRC+  L +    LP +   E   +   
Sbjct: 235  HTVDSYFLKNAAEMEVDFSDVPEAMENTVDIARRCNVELDLGNTFLPNYKVPEGMSV--- 291

Query: 307  EENELRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E+ L      GLE R  +   I + +    YR+RL  EL VI +M F GYFLIV DFI 
Sbjct: 292  -ESYLEKVVFDGLERRFRELSEIGRSFDPDQYRERLRHELGVINKMGFPGYFLIVWDFIN 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK++NIPVGPGRGSGAGS  A+A+ ITDIDPL F LLFERFLNP+R+SMPDFD+DFC +
Sbjct: 351  WAKEHNIPVGPGRGSGAGSCVAWAMRITDIDPLEFKLLFERFLNPERVSMPDFDVDFCMN 410

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI YV+ KYG + V QI TF  L+A+  +RD+ R +++PY++ D+L KL+P+    
Sbjct: 411  RRDEVIDYVKRKYGEKNVGQIATFHQLKARGVIRDIARVMELPYAEADKLAKLVPDPVGG 470

Query: 486  PVS--LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                   AI  +   +     DP +  LL+++  LEGL RH   HAAG+VI + PL + V
Sbjct: 471  KSPPVRDAIEQEPELKRLYNEDPKMRDLLDVAASLEGLNRHVGMHAAGVVIAEDPLWEYV 530

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P +R    +  VTQF MK  EKAGL+KFDFLGLKTLT++  ++  + ++         D+
Sbjct: 531  PCFRGQNGE-IVTQFAMKEAEKAGLVKFDFLGLKTLTVIHTAVRLINEQREAAGEPLFDI 589

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I   D   Y +++   T G+FQLESSG R+ L  ++PD +EDI+A V+LYRPGP++  
Sbjct: 590  DKIDKGDPAVYKMISRGDTTGVFQLESSGFREILTKLKPDQLEDIVAAVALYRPGPLEGG 649

Query: 659  VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V  +  RK+G++++   HP ++P+L++T GVI+YQEQVMQIAQ+L+GYSL  AD+LRRA
Sbjct: 650  MVDDFIERKHGRKRVEYPHPDLEPVLRDTYGVIVYQEQVMQIAQVLAGYSLGRADLLRRA 709

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK K+ M K+K+ F++GA++ G+   +A  +F+L+A FA YGFN+SH+AAY  ISYQT
Sbjct: 710  MGKKNKDVMAKEKDGFVTGATERGVDSKLAEQVFDLMAFFAGYGFNRSHSAAYGWISYQT 769

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----G 831
            A++K HYP EF+A  M+ + DN + I KF  +AR   + +  P VN    DF V      
Sbjct: 770  AYLKHHYPHEFMAGLMSCDQDNTDNIVKFIAEARAMGLVVARPDVNESAADFTVVVGEDD 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
              RI + L A+KGVG      I+E    D+ F S+ +FC RVDS+K NRRV+E+LV +GA
Sbjct: 830  TKRIRFGLGAVKGVGQGAVEAIIECRNQDEKFISIYEFCRRVDSQKCNRRVIEALVKSGA 889

Query: 891  LDCF----GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--------KI 938
             D      G  R ++  +++   +     +++R +   ++F        D          
Sbjct: 890  FDGLSEDAGLHRARVFATIEAAMESGAQAQRDRRSGQTSLFGLIAAPEGDSGATADGMPE 949

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIRL 997
            T  +     +      E+  LGFY SGHPLD Y+  L +       +            +
Sbjct: 950  TYPEVEEWPAKELLAFEKESLGFYISGHPLDRYRADLTRYANATTTDFLEGKRPAGPAAV 1009

Query: 998  AAMVVSKQQKKTRKGS-RIGWVTFSEPAKEYEANFFP 1033
              +V + +++ TRKG  +I +    +   + E   FP
Sbjct: 1010 GGVVSAYRERPTRKGDGKIAFFQLEDATGQLEVIVFP 1046


>gi|190150430|ref|YP_001968955.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 7 str. AP76]
 gi|189915561|gb|ACE61813.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 7 str. AP76]
          Length = 1201

 Score = 1076 bits (2782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1052 (39%), Positives = 613/1052 (58%), Gaps = 43/1052 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +TQ       FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  
Sbjct: 44   MTQQ-----RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYG 98

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            +A  +G++PIIG  + +  + + +              + LL     GY  +  L+S+ Y
Sbjct: 99   EALGSGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAY 148

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 +    +  +WL E+  EG+I+L+GG +G + +A    +   A++ +  +++ F +
Sbjct: 149  QQGYVEF-PLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENQAEADELVGFYQQYFPN 206

Query: 181  RLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  
Sbjct: 207  HYYLALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYT 266

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +    RP+  +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++    LP F   
Sbjct: 267  LDDPKRPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTG 326

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +        E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F G
Sbjct: 327  DL-----STEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPG 381

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SM
Sbjct: 382  YFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSM 441

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFD+DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+
Sbjct: 442  PDFDVDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRI 501

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KLIP DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI 
Sbjct: 502  SKLIPPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIA 560

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--- 592
               ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR   
Sbjct: 561  PTAITDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAR 620

Query: 593  --GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+
Sbjct: 621  EGKEPVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALF 680

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            RPGP+++ +   + +RK+G E++        H  + P+L  T GVI+YQEQVMQIAQ+L+
Sbjct: 681  RPGPLESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLA 740

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GY+L  AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNK
Sbjct: 741  GYTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNK 800

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+
Sbjct: 801  SHSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNS 860

Query: 824  PCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881
                F V +     Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR 
Sbjct: 861  GKHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRT 920

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITL 940
             E L+ +GA D  G  R  L+++L++  K +    K       ++F     T  + +   
Sbjct: 921  FEGLIMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAY 980

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                  +     E E+  LG Y SGHP+  +   L         E   T RG  + +A +
Sbjct: 981  ANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGI 1040

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++  +   T++GSR+G  T  + + + +   F
Sbjct: 1041 IMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1072


>gi|291519904|emb|CBK75125.1| DNA polymerase III catalytic subunit, DnaE type [Butyrivibrio
            fibrisolvens 16/4]
          Length = 1161

 Score = 1076 bits (2782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1055 (36%), Positives = 580/1055 (54%), Gaps = 47/1055 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YSLL+G+  +   + K       A AITD  N++  ++F ++  AAGI P
Sbjct: 2    SFVHLHTHTEYSLLDGSNKIKAYVKKCVDMGMTAAAITDHGNMYGVIDFYKECKAAGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC++ +                     ++LL    +GYQ LI++VS+ Y+ D      
Sbjct: 62   VLGCEVYVAPGSRFDRERVQGEDH--YYHLILLAENNQGYQNLIKIVSKGYV-DGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    LQ+   +G+I L+   +G + RA        A+   L ++  FG+   ++ LQ 
Sbjct: 119  RVDFEILQQYH-QGIICLSACLAGEVARALNRGLYDEAKAVALKYRDCFGEGNYFLELQD 177

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++   +Q +++L+    +PLVATN+  + ++ED ++HDVL+ +     +  +DR R
Sbjct: 178  HGIEEQKNVNQGLMRLSRETGIPLVATNDCHYTNKEDADSHDVLLCIQTGKKLQDEDRMR 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + Y+K+  EM+ +F    +A+  T EIA RC   ++     LP F   E  D    
Sbjct: 238  FETSEFYVKSEEEMLQLFPYATDAIGRTQEIADRCHVEIEFGVTKLPHFEVPEGYD---- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GL+ R        G  A + + RL +EL VI  M +  YFLIV DFI +
Sbjct: 294  SWTYLNKLCYEGLDRRY-------GDKASELKPRLKYELEVIKNMGYVDYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ + IPVGPGRGS AGS+ +Y   IT+IDP+++SL+FERFLNP+R+SMPD DIDFC +R
Sbjct: 347  ARTHGIPVGPGRGSAAGSLVSYTTGITNIDPMKYSLVFERFLNPERVSMPDIDIDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG + V QI+TFG+L+A+  +RDVGR + +PY  VD + K+IP D    
Sbjct: 407  RGEVIDYVIEKYGKDCVTQIVTFGTLKARGVIRDVGRVMDLPYGYVDSIAKMIPMDLGMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +S  R    +D  V  L+++++ LEGL R+   HAAG+VI  +P+ + VP+ 
Sbjct: 467  LD-KAMEANSELRAVYESDDQVKNLIDVARTLEGLPRNTGMHAAGVVIAGKPMDEYVPVA 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
            R       VTQF M  IE+ GL+K DFLGL+TLT++  ++  +    G+K+D+  I ++D
Sbjct: 526  RGADGSSIVTQFVMTTIEELGLLKMDFLGLRTLTVINDAVKLVEKNHGIKLDMDAIDYND 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                 +++     G+FQLES+GM+  ++ ++P  IEDIIA +SLYRPGP+D I  Y   K
Sbjct: 586  QGVMDMISAGKCEGVFQLESTGMKNFMKELKPHSIEDIIAGISLYRPGPMDFIPSYIKGK 645

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N K+ IV   P ++P+L  T G I+YQEQVMQI Q L+GYSL  AD +RRAM KK +  +
Sbjct: 646  NAKDAIVYDTPELEPILAPTYGCIVYQEQVMQIVQQLAGYSLGGADEIRRAMSKKKQYVI 705

Query: 726  DKQKERF----------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            ++ +E F                I G    GIS  +A  I++ +  FA Y FNKSHAAAY
Sbjct: 706  EENREIFVNGGQIENHITGKITQIPGCVSKGISSEVANGIYDHMVDFAKYAFNKSHAAAY 765

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            AV++ QTA++K +YP+EF+AA MT  +D   K+ ++    R   IQ++PP VN     F 
Sbjct: 766  AVVAIQTAYLKKYYPIEFMAALMTSVIDASGKVAEYIAVCRGNGIQVLPPDVNNGEGRFS 825

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V  ++I Y L AIK VG  T   I+ +   +  +  LEDF  R+     N+R +E+L+ A
Sbjct: 826  VDGDKIRYGLYAIKSVGRNTIDAIIYDREKNGTYRDLEDFIKRISKYDANKRTIENLIKA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKFSVE 946
            GALD    +R Q       I       +KN      ++  FA E+     KIT+ K    
Sbjct: 886  GALDTMDGNRRQKCMVFPEILDSVNNKKKNEIEGQMSLFDFASEEQKEDLKITMPKVDEF 945

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLA 998
            +  +    E+ ++G Y SGHPLD Y  +L+K       + +        +    + + + 
Sbjct: 946  DKEMLLAFEKELMGVYVSGHPLDDYISLLQKNVTAQANKFLIDEETGEVSVKDDSEVIVG 1005

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             M+     K T++G  + ++T  +     E   FP
Sbjct: 1006 GMITGITNKYTKQGKAMAFITIEDLTGTIEVIVFP 1040


>gi|298488347|ref|ZP_07006379.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
 gi|298157169|gb|EFH98257.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
          Length = 1173

 Score = 1076 bits (2782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1060 (39%), Positives = 606/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173  NRNNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA               Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVD 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +         +D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F V
Sbjct: 768  LVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              D RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  SDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KG 932
            ALD  G                +R  LL +L+   + A+   ++  + H ++F     + 
Sbjct: 888  ALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFVEA 947

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  DADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 Q--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|330964158|gb|EGH64418.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. actinidiae
            str. M302091]
          Length = 1173

 Score = 1076 bits (2782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1060 (39%), Positives = 607/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  + +   PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPAEADELLREWLTVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +R  D       V LA  H  PLVATN+  F+++ D+EAH+  + +     +    R   
Sbjct: 173  NRANDEEHLHAAVALAERHGAPLVATNDVRFINQTDFEAHETRVCIGEGRALDDPRRSHN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA               Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLMPGDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----RGVKVD 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +         +D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRERAKVDEAPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F V
Sbjct: 768  LVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                RI Y L AIKGVG      I +A    PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  SYDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KG 932
            ALD  G                +R  LL +L+   + A+   ++  + H ++F     + 
Sbjct: 888  ALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGGLFVEA 947

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  DADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 Q--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|192360327|ref|YP_001981623.1| DNA polymerase III subunit alpha [Cellvibrio japonicus Ueda107]
 gi|190686492|gb|ACE84170.1| DNA polymerase III, alpha subunit [Cellvibrio japonicus Ueda107]
          Length = 1177

 Score = 1076 bits (2782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1060 (38%), Positives = 604/1060 (56%), Gaps = 53/1060 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + +FVHL++H+ +SL +  + +  ++ ++A    PA AITD  N +  ++F + A   GI
Sbjct: 3    AANFVHLRLHTEFSLSDSLVRIKPLIKRVAELNMPACAITDQTNFYGLIKFYKAAQGTGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G    +                     + LL    +GY+ +IEL+SR +   Q + 
Sbjct: 63   KPIAGSDFLMA----------SHETDGKPTLLTLLAMNNQGYKNIIELISRAWRSGQQQG 112

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   W+ E  +EG+I L+GG  G +  A        A++ L  + + F +R Y+ LQ
Sbjct: 113  IAYIQREWISEY-SEGVIALSGGKFGDVGMALLGGRQAQAQELLQGWMRDFPNRFYLELQ 171

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            R  R  D       V LA   + P+VATN+  FL   ++E H+  + +     +    R 
Sbjct: 172  RTGRENDENYLHAAVDLAAQMQCPVVATNDVRFLKTSEFEVHEARVCIGEGRTLDDPRRE 231

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R +   YL++  EMV +FSD+PEA+ N+VEIA+RC+  +Q+    LP +   E      
Sbjct: 232  RRYSDQQYLRSAEEMVELFSDIPEAIANSVEIAKRCTITIQMGKYFLPEYPVPEG----L 287

Query: 306  EEENELRNKAVAGLEVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             E    R  ++ GL+ RL +             + Y +RL+FEL++I +M F GYFLIV 
Sbjct: 288  TEAEFFRKISLEGLDWRLEKILDKSLPDYAERRKVYEERLNFELDIIIQMGFPGYFLIVM 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQWAK ++IPVGPGRGSGAGS+ AYAL ITD+DPL++ LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFIQWAKDHDIPVGPGRGSGAGSLVAYALKITDLDPLQYDLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D RD+VI YV   YG + V+QIITFG++ AKA +RDV R     Y   D+L K+IP 
Sbjct: 408  FCMDNRDKVIAYVAENYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPP 467

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   +  QA+ ++ + +E    D     + E++ +LEGL R+   HA G+VI    L+ 
Sbjct: 468  TPGMTL-AQALEEEPQLKEFLAQDGDAQEIWEMAVQLEGLTRNVGKHAGGVVIAPTKLTD 526

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKV---- 596
              P++ D      VTQF+   +E+AGL+KFDFLGL+TLT++  +   +  QR  +     
Sbjct: 527  FAPLFCDETGSGLVTQFDKGDVEEAGLVKFDFLGLRTLTIIDWARIMIDKQRRKRGESPL 586

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +T+ LL    T  +FQLES GM+  ++ +QPD IED+IALV+L+RPGP++
Sbjct: 587  DINAIPLDDAKTFGLLKRAETTAVFQLESRGMKDLIKRLQPDNIEDLIALVALFRPGPLE 646

Query: 657  NIVV--YNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + NRK+G+ ++        H  + P+L+ T GVI+YQEQVMQIAQ+L+GY+L  
Sbjct: 647  SGMVDDFINRKHGRAEVAYPDAKFQHASLKPVLEPTYGVIVYQEQVMQIAQVLAGYTLGG 706

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA K G+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 707  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKQGVDPDLAIKIFDLVEKFAGYGFNKSHSAAY 766

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQTAW+K HYP  F+AA+M+ +MD  +K+  F ++ R   ++++PP VN+    F 
Sbjct: 767  AIVSYQTAWLKAHYPAHFMAATMSSDMDKTDKVVTFIEECRTMKLKLLPPDVNSGEFHFT 826

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D  RI Y L AIKG+G      I+ A  D  PF  L DFC+RVD++K+N+R LE+++ 
Sbjct: 827  VDDAGRIIYGLGAIKGLGEGPVESIIAARNDGGPFKDLFDFCARVDARKVNKRALEAIIR 886

Query: 888  AGALDCFG-----------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH----EKG 932
            +GA D  G           + R  +  ++    K A+    N      ++F      E+ 
Sbjct: 887  SGAADSLGPTYDTPEYNIDHDRAVMFSAMAEAVKTAEQATANSNAGMMDLFGAVMASEES 946

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
            T        +        R   E+  LG Y +GHP+D Y+  L               +G
Sbjct: 947  TNDVYADFRRVRTWTIKERLHAEKETLGLYLTGHPIDEYESELSHFVSSRIANLKP-EKG 1005

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            N   +A +++S++  KT++G  +  +T  +     +   F
Sbjct: 1006 NQ-TIAGLIISQRIVKTKRGDNMAILTLDDRTGRMDITLF 1044


>gi|149914036|ref|ZP_01902568.1| DNA polymerase III subunit alpha [Roseobacter sp. AzwK-3b]
 gi|149812320|gb|EDM72151.1| DNA polymerase III subunit alpha [Roseobacter sp. AzwK-3b]
          Length = 1167

 Score = 1076 bits (2782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 510/1058 (48%), Positives = 682/1058 (64%), Gaps = 48/1058 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP F+HL+VH+ YSLLEGA+ L ++         PA+A+TDTNN+F+ALEFS  A  
Sbjct: 1    MSSSPRFIHLRVHTEYSLLEGAVRLKSLAGLCEKAGMPAVAVTDTNNMFAALEFSVTASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPI+GCQ+D+D  +    T  G+   P  P +VLL     GY+ L++L S +YL   
Sbjct: 61   AGIQPIMGCQVDLDYLE----TQPGERAKPPAP-LVLLAQNEAGYENLMKLNSCLYLRGD 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q   + L+ L E   +G+I LTGG  GP+ R         A+  +      F DRLYV
Sbjct: 116  G-QLPHVTLAEL-EAHAQGVICLTGGPDGPVGRLLQAGQRPAAKALMGQLLAAFADRLYV 173

Query: 185  NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G D      R  E   V++AY   LPLVATN+  F     YEAHD L+ VA  T
Sbjct: 174  ELQRHPGEDGAPEAERLTERGFVEMAYAMGLPLVATNDVYFPDAGMYEAHDALLCVAEGT 233

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K   EM ++F+DLPEALENTVEIARRC+F      PILPRF +
Sbjct: 234  YVDQAEPRRRLTAQHYFKTPQEMATLFADLPEALENTVEIARRCAFGAYRRDPILPRFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E D        ELR +A  GLE RLA   I      ++Y +RL+FEL +I  M F GYF
Sbjct: 294  DEVD--------ELRRQAKEGLEARLA--VIPHAASVEEYHKRLEFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK+ +IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKEQDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVD+L K
Sbjct: 404  FDIDFCMDRREEVIQYVQRKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDKLSK 463

Query: 478  LIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+Q A+A + R REA  ++  VDRLL    K+EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIQQALAQEDRLREAARSEEVVDRLLNYGMKVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++  +   G   
Sbjct: 524  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAIGQIHAEGRDL 583

Query: 596  -----------------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                              D+  IP DD +TY L     T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  HIAADGSPIYEPFEGAENDIGQIPLDDAKTYELYARARTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KN   +   +HPLID +L ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPKYCEVKNALSERDRLHPLIDHILDETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ ++GY+L  AD+LRRAMGKKI+  MD ++ +FI+GA  NG+    A+ ++ LL KFA+
Sbjct: 704  AQEMAGYTLGGADLLRRAMGKKIQAAMDAERPKFIAGAKANGVDDAKALEVWNLLDKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++   +   
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLQLPYA 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            PP VN     F+V    ++Y+L A+K VG    R I+E   DKPF +L D   RVD K++
Sbjct: 824  PPCVNRSDAVFQVRGGVLHYALGALKNVGVEAMRLIVEGRGDKPFATLYDVARRVDLKRI 883

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE L  AGA D    +R ++  S++ +  Y+  +   +T+   ++F  E G    +
Sbjct: 884  GKRPLEMLARAGAFDELDRNRRRVFDSIEPLMNYSAAIFDQKTSSQVSLFG-EAGDDLPE 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE--SVATIRGNNI 995
              L        + R   E + +GFY SGHPLD Y   LR+  +K  +E  ++A  +G  +
Sbjct: 943  PRLSPVEDWLPAERLTEEFKAIGFYLSGHPLDDYMGALRRKDVKTLDEVTAMAEQKGALV 1002

Query: 996  -RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++A +V  +Q++K+ +G+R  +V  S+    +E   F
Sbjct: 1003 AKMAGVVSGRQERKSARGNRFAFVQLSDTTGGFEVTLF 1040


>gi|330432398|gb|AEC17457.1| DNA polymerase III subunit alpha [Gallibacterium anatis UMN179]
          Length = 1177

 Score = 1076 bits (2782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1048 (40%), Positives = 619/1048 (59%), Gaps = 39/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FVHL+VHS +S+++G   +  ++D+ A  Q  A+A+TD  N    ++F      
Sbjct: 20   IMSAPKFVHLRVHSDFSMIDGLPKVKTLVDECAKQQMVAMALTDFTNFCGLVKFYGATLG 79

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PI+G  + ++ ++                S+ LL     GYQ +  L+SR Y    
Sbjct: 80   KGVKPIVGADVLVNSEE----------LADEPFSLTLLAKNNAGYQNITLLLSRAYQRG- 128

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             ++   I   WL E   EG+I+L+GG  G + +     +   AE  L  +++ F D  Y+
Sbjct: 129  YREYPMIDREWLIE-HAEGIIILSGGKDGDVGKFLVRGNQNAAENCLAFYQRYFPDHFYL 187

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             + R    D     Q+ V LA  H++PLVATN+ +FL EED+EAH++ +A+     +   
Sbjct: 188  AISRTGRNDEEHYLQLAVNLAEQHQIPLVATNDVMFLCEEDFEAHEIRVAIHDGYTLDDP 247

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +RP+  +P  Y ++  EM  +F+DLP+ALEN+V IA+RC+  +++    LP+F   +   
Sbjct: 248  NRPKKYSPQQYFRSEQEMCELFADLPQALENSVYIAQRCNVTIRLGQYFLPQFPTGDL-- 305

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  +A  GLE RLA        +      Y +RL+ EL VI +M F GYFLI
Sbjct: 306  ---STEDYLIQQAKTGLEQRLAVLFPDEQERQQKRAKYDERLETELKVINQMGFPGYFLI 362

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K NNIPVGPGRGSGAGS+ AY++ ITD+DPL+F LLFERFLNP+R+SMPDFD
Sbjct: 363  VMEFIQWSKDNNIPVGPGRGSGAGSLVAYSIRITDLDPLQFDLLFERFLNPERVSMPDFD 422

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 423  VDFCMDGRDRVIEHVAQMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLI 482

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  EA  +D  V  L+++ +KLEG+ R+A  HA G+VI    +
Sbjct: 483  PPDPGMTLQ-KAFDAEPKLVEAYNSDEEVKELIDMGRKLEGITRNAGKHAGGVVISPSKI 541

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT++Q ++D + +R       
Sbjct: 542  TDFSPIYCDSEGKHPVTHFDKSDVEYAGLVKFDFLGLRTLTIIQWAVDMINERMRREGKP 601

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            ++D+  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP
Sbjct: 602  EIDIHHIPLDDEKSFKLLLDAQTTAVFQLESRGMKDLIRRLKPDCFEDIIALVALFRPGP 661

Query: 655  IDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +   +  RK+G+E+I        H  + P+L  T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 662  LQSGMVDNFIRRKHGEEEISYPDAEYQHQSLKPILDPTYGIILYQEQVMQIAQVLAGYTL 721

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 722  GGADLLRRAMGKKKPEEMAKQRSVFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 781

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K H+P EF+AA MT EMD VEKI  F  ++ +  ++++PP +NT    
Sbjct: 782  AYALVSYQTLWLKAHFPAEFMAAVMTSEMDKVEKIVNFYDESLRMGLKVVPPDINTGKYG 841

Query: 828  FKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +     Y L AIKGVG     +I+EA  +   F  L D C+RVD +K+NRR  ++L
Sbjct: 842  FSVNEKGEIVYGLGAIKGVGEAPVENIIEARTSGGLFRDLFDLCARVDLRKINRRTFDNL 901

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + AGALD  G  R  +  +L++  K +    K+      ++F     +    +       
Sbjct: 902  IKAGALDKLGPHRAAIALNLEDALKASDQHAKDEALGQTDMFGVLASSPKQVEQAYANTP 961

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 +  + EQ  LG Y S HP+  Y   L         E   T RG +  ++ +VV+ 
Sbjct: 962  KWTEKMVLDGEQETLGLYLSSHPISRYLKELSHYS-NRLSEVSVTRRGESCTVSGLVVNF 1020

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+R+G +T  + +   +   F
Sbjct: 1021 RSLVTKRGNRLGILTLDDRSARMDITLF 1048


>gi|92112711|ref|YP_572639.1| DNA polymerase III subunit alpha [Chromohalobacter salexigens DSM
            3043]
 gi|91795801|gb|ABE57940.1| DNA polymerase III, alpha subunit [Chromohalobacter salexigens DSM
            3043]
          Length = 1168

 Score = 1076 bits (2782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1053 (39%), Positives = 611/1053 (58%), Gaps = 45/1053 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  FVHL+VH+ YSL++G + L  +++       PA+A+TD +NLF  ++  + A  AG+
Sbjct: 2    TTPFVHLRVHTEYSLVDGLVRLKPLIEATVEGGMPAVAVTDDSNLFGLVKTYKAAQGAGL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +P+IG  L ++   + +              + LL    +GY+ L EL+S+ +   Q + 
Sbjct: 62   KPVIGADLWMENPHDEEH----------PYRVTLLAMDNDGYRHLTELISQGWSEGQQRG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   W+    + GLI L+G   G I R       Q A +    +K  F  R Y+ +Q
Sbjct: 112  QGILKKEWIF-ARSAGLIALSGARDGEIGRYLLSEHGQAARELCEGWKAAFPGRFYLEVQ 170

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            R  R +D       V LA   E P+VATN+  FL+ EDY AH+  +A+     +    R 
Sbjct: 171  RTGREHDEECLHLSVALAAETETPVVATNDVRFLTREDYWAHETRVAIGEGKALDDPRRE 230

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R + + YLK+  EM  +FSDLPEALEN+V IA RC+  + +    LP +   +   +  
Sbjct: 231  RRYSEEQYLKSPQEMAELFSDLPEALENSVMIAARCNVDVPLGEIFLPEYPVPDGMSM-- 288

Query: 306  EEENELRNKAVAGLEVRLAQ---------GAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              +   R  +  GL  RL +                +   YR+RLDFELN+I  M F GY
Sbjct: 289  --DGFFRKISHDGLTERLDKLFSGENPIYPGRDLAEYEPAYRERLDFELNIILEMGFPGY 346

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV DFIQWAK N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMP
Sbjct: 347  FLIVMDFIQWAKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMP 406

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC ++RD VI YV ++YG + V+QI+TFG++ AKA +RDV RA   PYS  D+L 
Sbjct: 407  DFDVDFCMEKRDRVIEYVASRYGRDAVSQIVTFGTMAAKAVVRDVARAQGKPYSMGDKLS 466

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP +    +  +AI  +   +E   +D     + +++ KLEG+ R    HA G+VI  
Sbjct: 467  KLIPFEVGMTL-AKAIEQEPALKEYLDSDEESQEIWDMALKLEGITRGTGKHAGGVVIAP 525

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQ 591
              L+   P+  D      V Q++   IE+AGL+KFDFLGL+TLT++  +L+ +      +
Sbjct: 526  TKLTDFSPLLCDEDGSGLVVQYDKNDIEEAGLVKFDFLGLRTLTIIDWALEMVDTVRARE 585

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +D++ IP DD  T+ +L    T  +FQLES GM++ ++ +QPD +ED+IALV+L+R
Sbjct: 586  GQGPLDIASIPLDDVPTFDMLKKAETTAVFQLESRGMKELIKRLQPDSLEDMIALVALFR 645

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PGP+ + +V  + NRK+G+ ++   HP     L+ P+L+ T G+I+YQEQVMQIAQ+L+G
Sbjct: 646  PGPLQSGMVDDFINRKHGRAEVAYPHPDYQHELLKPVLEPTYGIILYQEQVMQIAQVLAG 705

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YSL +AD+LRRAMGKK  EEM KQ+  F+ G + NGI K +A N+F+L+ KFA YGFNKS
Sbjct: 706  YSLGQADMLRRAMGKKKPEEMAKQRAGFMEGCAANGIDKDLAGNLFDLVEKFAGYGFNKS 765

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAY ++SYQTAW+K HYP  F+AA ++ EMDN++K+    ++ R   + + PP VN  
Sbjct: 766  HSAAYGLVSYQTAWLKAHYPAPFMAAVLSTEMDNLDKVVPLIEECRNQGLTVTPPDVNMG 825

Query: 825  CVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882
               F V    R+ Y L AI+GVG      I+EA  AD  F  L DFC RVD+K+LN+R L
Sbjct: 826  SYKFTVDEQGRVVYGLGAIRGVGEGPIGAIVEAREADGAFSDLFDFCRRVDAKRLNKRTL 885

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---EKGTFSDKIT 939
            E+L+ +GALD  G +R  L+ SL+   K A     N      ++F     E         
Sbjct: 886  EALIRSGALDNLGPTRAVLMASLEAALKAAAQSTTNANLGMMDMFGEAFSEPEAGDAYAD 945

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
                       R   E+  LG Y +GHP+D Y+  L++       +     RG + R+A 
Sbjct: 946  YRGVREWTDKERLAGEKDTLGLYLTGHPIDEYESELKRFVSTRIVDLKPQ-RGESQRVAG 1004

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +  K+++G  + ++T  +     EA+ F
Sbjct: 1005 LVVAMRTMKSKRGDTMAFITLDDRTGRIEASLF 1037


>gi|154484297|ref|ZP_02026745.1| hypothetical protein EUBVEN_02010 [Eubacterium ventriosum ATCC 27560]
 gi|149734774|gb|EDM50691.1| hypothetical protein EUBVEN_02010 [Eubacterium ventriosum ATCC 27560]
          Length = 1161

 Score = 1076 bits (2782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1051 (34%), Positives = 576/1051 (54%), Gaps = 37/1051 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +  I  +       ++AITD   ++  ++F + A   GI+P
Sbjct: 2    NFAHLHVHTEYSLLDGSSKIKEITKRAKELGMNSLAITDHGVMYGCIDFYRAALENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +      +   +          ++LL    EGY  L ++VS+ ++        
Sbjct: 62   IIGCEVYVAPGSRFE--KEAGDNEDRYYHLILLAENNEGYANLCKIVSKGFVEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L++   EG+I L+   +G + +       +  ++  L ++K+F     ++ +Q 
Sbjct: 119  RVDYEVLEKYH-EGIICLSACLAGEVQKYLARGEYEKGKEAALKYEKIFGKGNYFLEMQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     Q+++++   E+ LV TN+  +   +D EAHD+L+ +      + +DR R
Sbjct: 178  HGIPEQATVNQQLMRMSEELEIDLVCTNDVHYTFADDVEAHDILLCIQTGKKKADEDRMR 237

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  YLK+  EM  +F   P+A+ENT +IA RC+   +     +P F   E       
Sbjct: 238  YEGGQFYLKSPEEMYQLFKYAPQAMENTQKIADRCNVTFEFGVTKIPNFPVPEG----YT 293

Query: 307  EENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                L+     GL  R      +         ++  +RL++ELN I  M +  YFLIV D
Sbjct: 294  SWTYLKELCETGLHNRYPVFKGEVDQNCHLTKEELEERLNYELNTIKNMGYIEYFLIVWD 353

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI +AK N I VGPGRGS AGS+ +Y L ITDI+P+R++LLFERFLNP+R+SMPD D+DF
Sbjct: 354  FIHYAKSNGIAVGPGRGSAAGSIVSYCLEITDIEPMRYNLLFERFLNPERVSMPDIDVDF 413

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  KYG + VAQI+TFG+L+A+  +RDVGR L MPY+QVD + K+IP +
Sbjct: 414  CIERRQEVIDYVGRKYGKDHVAQIVTFGTLKARGVIRDVGRVLDMPYAQVDNIAKMIPQE 473

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +   A+  +   +    +DP V  L+++S++LEGL RHAS HAAG+VI  +P+ + 
Sbjct: 474  LNITLD-GALKQNRELKTLYDSDPEVKYLIDMSRRLEGLPRHASMHAAGVVICGKPVDEY 532

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+ R        TQ+ M  +E+ GL+K DFLGL+ LT++Q +  F+ + RG+++DL  I
Sbjct: 533  VPLSRAA-DGSITTQYIMTTLEELGLLKMDFLGLRNLTVIQNAQRFIKKNRGIELDLMKI 591

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             ++D +    + T  T GIFQLES+GM+  ++ ++P  +EDIIA ++LYRPGP+D I  Y
Sbjct: 592  DYNDKKVLDYIGTGNTEGIFQLESAGMKNFMKELKPQSLEDIIAGIALYRPGPMDFIPKY 651

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               KN ++ +    P + P+L+ T G I+YQEQVMQI + L+GYSL  +D+LRRAM KK 
Sbjct: 652  LEGKNNRDSVTYDCPQLIPILEPTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMSKKK 711

Query: 722  KEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            +  M+K+++ F+         G  KNGIS+ IA  I++ +  FA Y FNKSHAAAY V++
Sbjct: 712  QAVMEKERQSFVYGNREEGVKGCIKNGISEEIANKIYDEMIDFAKYAFNKSHAAAYGVVA 771

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K +Y  EF+AA +T  MD   K+ ++    R   I+I+PP +N     F    N
Sbjct: 772  YQTAYLKYYYAAEFMAAMLTSVMDISTKVAEYVYSCRSMGIEILPPDINEGESGFSAKGN 831

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L AIK VG      I+E       +  LEDF +R  +  +N+R +E+ + AGA D
Sbjct: 832  SIRYGLTAIKNVGKNIIDGIVEEREKHGKYTDLEDFITRTANLGVNKRAIENFIKAGAFD 891

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSV 950
                +R Q++     I        K+      +IF     +  +  K+ +          
Sbjct: 892  SLNATRKQMMMVYIQILDGVNKENKDAWEGQMSIFDMADDSTKEKYKVKMPDVGEYTVDQ 951

Query: 951  RFENEQRVLGFYFSGHPLDV----YKPILRKMGIKGYE----ESVATIRGNNIRLAAMVV 1002
            +   E+ V+G Y SGHPL      ++  +  M I   E    E       + + +  ++ 
Sbjct: 952  KLAFEKEVIGIYASGHPLQAQEQKWRKHITNMSIDFTEPEEGEESKVPDKSKVAVGGIIS 1011

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  +K T+ G ++ ++T  +     E   FP
Sbjct: 1012 AITKKFTKTGQQMAFITLEDLVGTVEVVVFP 1042


>gi|212212283|ref|YP_002303219.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuG_Q212]
 gi|212010693|gb|ACJ18074.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuG_Q212]
          Length = 1143

 Score = 1075 bits (2781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1034 (40%), Positives = 623/1034 (60%), Gaps = 33/1034 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++HS YS+++  + ++ +L +    + PA+A+TD  NLF+ ++F ++A   GI+P
Sbjct: 4    SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +   D+             V     L     G++ LI+L+SR Y+  + +  V
Sbjct: 64   IIGSELLLAEGDD-------------VFRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL +   EGLI+L+G   G + +A     S +AE+RL  +   F  R Y+ LQR 
Sbjct: 111  LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
            R   +      V++LA  H +P+VATN   FLS+ D+EAH+  + +    ++   +RPR 
Sbjct: 170  RRDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPRE 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   Y K+  EM ++FSD+PEALENTVEIA+RCS  L +    LP+F       +    
Sbjct: 230  YSDQQYFKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVPANLKV---- 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+  R +A  GL  RL    +      +DY +RL+ E+ VI +M F+ YFLIVADFI WA
Sbjct: 286  EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAWA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+++IPVGPGRGSGAGS+ AY+L IT++DPL   LLFERFLN +R+SMPDFDIDFC + R
Sbjct: 346  KQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEGR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV  +YG E VAQIIT+G++ A+A LRDVGR L +PY  VD++ KL+P +    +
Sbjct: 406  DRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELGVTL 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +    +    D  V  L++++ KLEGL R+A  HA G+VI    L+  VP+Y 
Sbjct: 466  E-KALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPLYS 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKVDLSLIP 602
            +  SD  VTQF+   +E  GL+KFDFLGL+TLT++  ++  +      Q   ++D+  IP
Sbjct: 525  EPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKRKIQNETELDIGTIP 584

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD +TY LL +  T  +FQLES GM++ +  +QPD   DI+ALV+L+RPGP+ + +V  
Sbjct: 585  LDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMVET 644

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K+G++ +  +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL  ADVLR AMGKK
Sbjct: 645  FIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMGKK 704

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM KQ+  F+ G    G+ + +A  IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW+K
Sbjct: 705  KPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAWLK 764

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSL 839
             HYP EF+AA ++ +MDN +K+  F  + R  N++++PP++N     F V       Y L
Sbjct: 765  AHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVYGL 824

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKGVG     +I+    A+  F  L +FCSRVD +K+NRR +E L+ +GA+D FG SR
Sbjct: 825  GAIKGVGEAAVMNIVACREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGVSR 884

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              L +SL    + A+   ++      ++F  E     +  T  +    N S R   E+  
Sbjct: 885  ASLFESLTKAFQAAEQRNRDMILGQHDLFGEEVKGIDEDYT--EVPEWNDSDRLRGEKET 942

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG Y SGHPL      ++ +G        +    N++ +A M++  +   TR G R+  +
Sbjct: 943  LGLYVSGHPLQACIKEMKAVGAVPINHL-SLSEKNSVVVAGMMMGMRTITTRSGKRMAIL 1001

Query: 1019 TFSEPAKEYEANFF 1032
            +  +   + +   F
Sbjct: 1002 SLEDQTGKIDVTLF 1015


>gi|289422260|ref|ZP_06424114.1| DNA polymerase III subunit alpha [Peptostreptococcus anaerobius
            653-L]
 gi|289157311|gb|EFD05922.1| DNA polymerase III subunit alpha [Peptostreptococcus anaerobius
            653-L]
          Length = 1193

 Score = 1075 bits (2781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1065 (36%), Positives = 606/1065 (56%), Gaps = 55/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +E++  F HL VH+ YSLL+G   L+ ++ ++      + AITD   +F A++F +K   
Sbjct: 1    MEENKDFCHLHVHTEYSLLDGFSRLDRLIPRLKELGMTSCAITDHGTMFGAIDFYKKCKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIGC++ +  +    +  +          ++LL    EGY+ LI++VS  Y+ D 
Sbjct: 61   EGIKPIIGCEVYVAPRT---LDQKDSVLDKYSSHLILLAENNEGYENLIKIVSDSYV-DG 116

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
                 R     L++  ++G+I L+   +G + +A    + + A    + ++ +F  D  Y
Sbjct: 117  FYYKPRTDKDQLRKY-SKGIICLSACLNGEVAKALLARNYENALNYAVEYRDIFGKDNFY 175

Query: 184  VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H+   D+   + +++++    +PLVATN++ ++  ED +  DVLM +A    +  
Sbjct: 176  LEMQDHKLAEDKEVNAGLIKISKELGIPLVATNDAHYVYREDSKIQDVLMCIAMQKTLDD 235

Query: 243  KDRPRVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              R +   D +  K+R EM  +F  +PEA++NT+EIA+RC+     +   +P F   E  
Sbjct: 236  PSRMKFPNDEFYIKSREEMEGLFKFVPEAIDNTLEIAKRCNVEFDFNNYHIPTFKVPEG- 294

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 EE+ LR     GLE R             + R RL+FE+N IA M +  YFLIV 
Sbjct: 295  ---YTEESYLRYLCQKGLEERYED-------ITDEIRDRLEFEINTIANMGYIEYFLIVW 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI +AK+NNI VGPGRGS AGS+ AY L ITDIDP++++LLFERFLNP+R++MPD DID
Sbjct: 345  DFINFAKENNIMVGPGRGSAAGSIVAYTLKITDIDPIKYNLLFERFLNPERVTMPDIDID 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC  RR+EVI YV+ KYG + VAQIITFG++ AK A+RDVGR L + Y++VD + K IP 
Sbjct: 405  FCYKRREEVIEYVKRKYGSDHVAQIITFGTMGAKLAIRDVGRVLDIAYNKVDAVAKEIPF 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +  +A   +    E   +D  V  ++++S+KLEG+ RHASTHAAG+VI  RP+  
Sbjct: 465  ELNMTID-KAFDKNPTLTEMYESDQDVKEVIDVSRKLEGMVRHASTHAAGVVISKRPVHD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
             VP+YR+  S    TQF M  +E+ GL+K DFLGL+TLT+++ +LD +            
Sbjct: 524  YVPLYRNQDS--ITTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIEINREDRGYTEK 581

Query: 597  -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             D S + +DD + Y LL++  TLG+FQLESSGMR  ++ ++PD  EDI+A +SL+RPGP+
Sbjct: 582  IDFSKMDYDDPKVYELLSSGNTLGVFQLESSGMRNFMKQLKPDSFEDIVAGISLFRPGPM 641

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D+I  Y + KN  E+   +H  + P+L+ T G ++YQEQVMQ+ + L+GYS   +D++RR
Sbjct: 642  DSIPRYISFKNNPEEATYLHEKLRPILEVTYGCLVYQEQVMQVVRELAGYSFGRSDLVRR 701

Query: 716  AMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNK 763
            AM KK  + M+++++ FI             G  +NG+ + IA  IF+ +  FA Y FNK
Sbjct: 702  AMSKKKMDVMEEERQYFIHGKFDDKGNIEIPGCIRNGVPEDIANQIFDDMIDFAKYAFNK 761

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAAAY V++Y+TA++KT+YPVEF+AA MT  + N +K+ ++ ++  +  I+++PP +N 
Sbjct: 762  SHAAAYGVLAYETAYLKTYYPVEFMAALMTSVIGNTDKVVEYMRECSKLGIEVLPPDINR 821

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVL 882
                F V    I + L A+K VG      I+ E      F    +   R+DS+  N+R +
Sbjct: 822  SYSMFSVDKGHIRFGLVAVKNVGANVIDGIVKEREEGGEFTDFVNMIKRLDSRFTNKRAI 881

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEKGTFSDK 937
            ESL+  GALD  G +R  LL S ++I       +K       ++F       +     D 
Sbjct: 882  ESLIKCGALDSLGETRASLLLSFEDILDSVSRDKKRNVEGQISLFDMVSDQGQDLGIIDN 941

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG------IKGYEE---SVA 988
             +++ +      +  + E+ V+G Y SGHPL  Y+ IL +        IK  +E    + 
Sbjct: 942  TSIKHYDEFKQKIILDMEKEVMGMYISGHPLSEYEDILARRTSINNFKIKELKEDPKLLQ 1001

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +      +  +VVS +   T++   + +V   +     E   FP
Sbjct: 1002 ELNDQEHIVGGIVVSSRLMTTKRNEMMAFVEIEDIFGSLEVVVFP 1046


>gi|238926991|ref|ZP_04658751.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
 gi|238885225|gb|EEQ48863.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
          Length = 1130

 Score = 1075 bits (2781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1034 (36%), Positives = 602/1034 (58%), Gaps = 30/1034 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+GA  +  ++ +       A+A+TD   ++ A+ F ++A A GI P
Sbjct: 2    AFAHLHVHTEYSLLDGASRIKELVCRTKELGMDAVAMTDHGVMYGAVAFYKEAKAQGIHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +   +   + +        ++LL     GY+ L++L+S   +        
Sbjct: 62   IIGCEVYLAPRQRQE---RAEVNGTRYYHLILLAENECGYRNLVQLISLANIEG-YYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI    L+    +GLI L+   +G I +A      ++A+  +  +  +F  D  ++ +Q 
Sbjct: 118  RIDKELLRRFH-KGLIALSACVAGEIPQAVLRGDMELADALVREYSGIFGRDNFFLEIQD 176

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +  + ++ + +LA  H + LVATN+  +++ ED E HD+L+ V     ++  DR R
Sbjct: 177  HGLPEEKKVNRTLRRLAEKHNIGLVATNDVHYVNTEDSEFHDILLCVQTGRTLNDPDRMR 236

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + PD+YLK+  EM ++F+D P A+ENT +IA RC          LP +           
Sbjct: 237  FSGPDYYLKSEEEMTALFADYPGAIENTAKIAERCQVDFTFGELQLPFYPLPGG---YTT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +++ LR      +  R             +  QRLD+EL VI +M ++ YFLIV DFI +
Sbjct: 294  DDDYLRALCTERIPARYPAAG-------NEVHQRLDYELGVIHKMGYASYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ + + VGPGRGS AGS+ A+ L IT+IDPLR++LLFERFLNP+R+SMPD DIDF    
Sbjct: 347  ARGHGVAVGPGRGSAAGSIVAFLLGITNIDPLRYALLFERFLNPERVSMPDIDIDFDDIN 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R  VI YV+ +YG + VAQI TFG++ AK A+RDV R L+MP+ +V  + KL+P +    
Sbjct: 407  RGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVARVLEMPFGEVSTITKLVPAELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ + + FR     D    R++++++K+EGL R+ S HAAG+VI   PL+  VP++
Sbjct: 467  LD-RALKESADFRRRYEEDEEAHRVIDLARKIEGLPRNTSIHAAGVVIAKSPLTSQVPVW 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
              V     VT+++   +E  GL+K DFLGL+TL+++  +++ + Q  GV +++  IP  D
Sbjct: 526  --VSEGTLVTEYDKDDVEALGLLKMDFLGLRTLSIIADAVENIRQSHGVDINMDRIPLID 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
             +T  +L    T  +FQ+ES+GM   ++ +QP    D+I  V+LYRPGP+ + +V  + +
Sbjct: 584  EKTSQMLCNGDTGAVFQMESAGMTNLVKELQPKGFVDLIPTVALYRPGPLGSGMVTDFID 643

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
              +GK+ +V +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK  E
Sbjct: 644  GLHGKKDVVYMHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKKKHE 703

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  QKE F+ G  KNGI+  +A +IF+LL  FADYGFNKSH+AAY ++++QTA++K HY
Sbjct: 704  LLMAQKEIFLQGCEKNGIAAELANHIFDLLTHFADYGFNKSHSAAYGLLAWQTAYLKAHY 763

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+A  +T  MD  +KI  + Q   Q  I I+PP +N     F + D  I + LAA++
Sbjct: 764  PVEFMAGVLTSIMDKTDKIPVYIQLCHQMKINILPPDINASTASFSIEDGAIRFGLAAVR 823

Query: 844  GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      +++  A+   F SL +FC+RVD + +N+R +ESL+  GA DC G  R QLL
Sbjct: 824  NVGEAAIGSMVQVRAEGGKFHSLVNFCARVDMRTMNKRAIESLIKCGAFDCLGRERNQLL 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQRVLGF 961
             SLD   + A   +++R +    +F+ +      +I          +  R   E+   GF
Sbjct: 884  YSLDFAMQDAARSQRDRMSGQIGLFSSDTMESVQQIQDFPDVPPTTAEERLMWEKEATGF 943

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y +GHPLD Y+  L    +    +    +R +   +R+  ++ + ++  T+KG  + +  
Sbjct: 944  YITGHPLDDYRDTLS--SLLPINDIRGELRKDRQLVRIGGILTNTKRYTTKKGDTMLFAE 1001

Query: 1020 FSEPAKEYEANFFP 1033
              + +   E   FP
Sbjct: 1002 MEDFSGRIEVTVFP 1015


>gi|323142354|ref|ZP_08077186.1| DNA polymerase III, alpha subunit [Phascolarctobacterium sp. YIT
            12067]
 gi|322413238|gb|EFY04125.1| DNA polymerase III, alpha subunit [Phascolarctobacterium sp. YIT
            12067]
          Length = 1135

 Score = 1075 bits (2781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1036 (36%), Positives = 604/1036 (58%), Gaps = 32/1036 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  F HL VH+ YSLL+GA  ++ ++         ++AITD   ++ A+EF Q+   AGI
Sbjct: 2    TKRFTHLHVHTEYSLLDGASKIHELVAYAKELGMDSLAITDHGAMYGAVEFYQECTKAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC++ +    +L+  N+G      +  ++LL     GY  L+++VS   L      
Sbjct: 62   KPIIGCEVYLSKGSHLEKNNRG------MYHLILLAENDTGYHNLMKIVSIGQLEG-FYY 114

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
              R+    L+    EG+I L+   +G + +    ++ + A + +  +  +F  +  ++ +
Sbjct: 115  KPRVDKDVLRTYH-EGVICLSACVAGEVPQMILQDNLEGARRCIQEYIDIFGKENYFLEI 173

Query: 187  QRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   + ++  +++ QLA    L LVATN+  ++ ++D  A D+L+ +  ++ V + DR
Sbjct: 174  QDHDLDEEHKVSAELKQLAQEFGLGLVATNDLHYVQQKDAAAQDILLCIQTTSTVDEPDR 233

Query: 246  PRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R   D +YLK+  EM ++F D PEAL NT +IA RC+  ++    +LP F   E  D  
Sbjct: 234  MRFNNDSYYLKSYDEMEALFGDCPEALSNTNKIADRCNVKMEFGHLLLPEFPVPEGFDAV 293

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR+     L  R            +  R+RLDFEL++I  M ++ YFLIV DFI
Sbjct: 294  ----SYLRHLCEEALPKRY-------EVVDEKVRKRLDFELDIINTMGYACYFLIVWDFI 342

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             + + ++IPVGPGRGS AGS+ AY L IT+I+PLR+ LLFERFLNP+R+SMPD D DFC 
Sbjct: 343  NYCRSHDIPVGPGRGSAAGSIVAYLLRITNIEPLRYHLLFERFLNPERVSMPDIDTDFCY 402

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             +R++V+ YV  +YG ERVAQIITFG+LQA+AA+RDVG+AL M Y +VD + KLIP +  
Sbjct: 403  VKRNQVLDYVVRRYGQERVAQIITFGTLQARAAVRDVGKALGMSYGEVDEIAKLIPRELG 462

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+     FR+A  + P V +L++++Q +EGL R+A THAAG++I    +   VP
Sbjct: 463  ITLE-KALNGSKDFRQAYDSRPEVKKLIDLAQSVEGLPRNAGTHAAGVIIAPHNMKNYVP 521

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            + +     + +TQ++   +E+ GL+K DFLGL+TLT++   + F+ +    +VD+  IP 
Sbjct: 522  LQQGSEGGV-ITQYDKNKVEELGLLKMDFLGLRTLTVIGDCIRFIRETTGEEVDIDNIPL 580

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661
             D  T  +L    T  +FQLES+G+ + +  + P+  ED+I LV+LYRPGP+   +   +
Sbjct: 581  ADEATCAMLRRGETACVFQLESAGITKLVMDLAPESFEDLIPLVALYRPGPLGTGMAEDF 640

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               ++G+     +HPL++P+LK+T GVI+YQEQVMQI   L+G++L +AD+LRRAMGKK 
Sbjct: 641  IAGRHGQRTAKVLHPLMEPILKDTYGVILYQEQVMQITSALAGFTLGQADILRRAMGKKK 700

Query: 722  KEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             +E+D  ++ FI GA K + I + ++  IF LL  FA YGFNKSH+ AYA+++Y+TA++K
Sbjct: 701  AKELDSMRQSFIDGAKKLHDIPEELSDQIFSLLQHFAGYGFNKSHSVAYALVAYETAYLK 760

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSL 839
             H+  +F AA +   + + +K+  +    R  N++I+PP VN    +F V  N    + L
Sbjct: 761  AHWRPQFYAAFLNSIIGDADKVSWYINVCRNDNVKILPPDVNESGHNFTVHKNSSIRFGL 820

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            A IK  G      I+ A     PF SL DFC RV+ + +N+RV+E+++  GA+D FG  R
Sbjct: 821  AGIKNTGDAAVDAIISARNEGGPFKSLTDFCCRVNMRVVNKRVIENMIKCGAMDSFGARR 880

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             Q+L  ++         ++++ N    +F  +    + +I L         +  +NE+ +
Sbjct: 881  SQMLSIIEQAVDLGAACQRDKANGQLGLFGDDSFGVT-EIKLPPLPEIPKQLILQNEKEI 939

Query: 959  LGFYFSGHPLDVYKPILRK-MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            +GFY + HPL  YK +L++ M +  +        G  +R+A ++     K T++G  +  
Sbjct: 940  IGFYVTDHPLSDYKQMLQRFMPLHQFGGETQVQDGQFVRVAGIITDCTIKNTKRGDTMAV 999

Query: 1018 VTFSEPAKEYEANFFP 1033
            +T  + +  +    FP
Sbjct: 1000 LTLEDFSGRFPVIVFP 1015


>gi|170756612|ref|YP_001783011.1| DNA polymerase III DnaE [Clostridium botulinum B1 str. Okra]
 gi|169121824|gb|ACA45660.1| DNA polymerase III, alpha subunit [Clostridium botulinum B1 str.
            Okra]
          Length = 1185

 Score = 1075 bits (2781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1075 (35%), Positives = 605/1075 (56%), Gaps = 55/1075 (5%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q+ EK P +V L  H+ YSLL+ +  +++++ +       +IAITD   ++  ++F ++
Sbjct: 4    NQFDEKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKE 63

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   GI+PIIGC++ +  +    M  + +        +VLLV    GY+ L+E+VS+  +
Sbjct: 64   AIKQGIKPIIGCEIYVASKS---MYIKQQDKENETHHLVLLVKNEIGYKNLMEIVSKASV 120

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                    R+   +L++  +EGLI L+    G +       + + AE+  L +K +F +R
Sbjct: 121  EG-FYYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFKER 178

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ LQ H   ++ + ++ +V+++    +PLVATN+  ++ +EDY++HD+L+ +     V
Sbjct: 179  FYLELQYHGMEEQLKVNETLVKMSKDLYIPLVATNDVHYIRKEDYKSHDILLCIQTGKTV 238

Query: 241  SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +++R R   D  YLK+  EM   FS +PEALENTV+I+  C+F    H   LP+F  +E
Sbjct: 239  EEENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEE 298

Query: 300  CDDIQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYR-------------QRLDFE 344
              D        LR     GL +R    +  I K +   +               +RL++E
Sbjct: 299  GVDPY----EYLREICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNYE 354

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L++I +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+F
Sbjct: 355  LSIIKQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIF 414

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNPDR+SMPD D DFC +RR EVI YV  KYG E V+QIITFG++ A+A +RDVGRA
Sbjct: 415  ERFLNPDRISMPDIDSDFCYERRGEVIDYVVEKYGKENVSQIITFGTMAARACIRDVGRA 474

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            +  PY++VDR+ K+IP      ++ +A+  +   +E    +  V  L+++++ LEGL RH
Sbjct: 475  MNYPYAEVDRIAKMIPTVLNITIN-KALELNPELKEVYDNEERVRELIDVARALEGLPRH 533

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             STHAAG+VI  +PL   VP+ +    +  VTQF M  +E+ GL+K DFLGL+TLT+++ 
Sbjct: 534  TSTHAAGVVIASQPLVNYVPLQK--NEESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRD 591

Query: 585  SLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++  + + + + +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +EDI
Sbjct: 592  AVRIIKENKEINIDLDNIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDI 651

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            IA +SLYRPGP+  I  Y   KN    I      ++P+L  T   I+YQEQVMQI + L+
Sbjct: 652  IAGISLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDLA 711

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAK 755
            GYS+  +D++RRAM KK  + M++++  FI         G   NGI + +A ++F+ +  
Sbjct: 712  GYSMGRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMMD 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSHAAAYAV+ +QTA++  +YP EF+AA +     + +K+  +   A+   I+
Sbjct: 772  FASYAFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGIE 831

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDS 874
            I+ P++N    +F V DNRI + L A+K VG     +I+ +   K  F  L DF ++VD+
Sbjct: 832  IIAPNINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVDT 891

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKG 932
              +N+R++ESL+ AGA DC    R ++L   + I    Q  ++N      N+F    +  
Sbjct: 892  SIINKRLVESLIKAGAFDCLKIYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNK 951

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-- 990
              S  I        +     + E+ + G YFSGHPL+ Y+  L+        + +     
Sbjct: 952  ESSIDIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKESL 1011

Query: 991  ------------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                         G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1012 EGNLVDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|77457343|ref|YP_346848.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens Pf0-1]
 gi|77381346|gb|ABA72859.1| DNA polymerase III alpha subunit [Pseudomonas fluorescens Pf0-1]
          Length = 1173

 Score = 1075 bits (2781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1060 (39%), Positives = 606/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F +    AGI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRIKPLVKALTGMGMPAVAVTDQNNMCSLVKFYKNTMGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +  +D          P   +  I LLV  A+GY+ L EL+SR ++  Q    V
Sbjct: 64   ICGADLWLSNKD----------PDGPLSRISLLVMNAQGYRNLTELISRGFIDGQRNGMV 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ E   EGLIML+    G I  A    +   AE     +  +F DR Y+ +QR 
Sbjct: 114  IIEREWVAE-ANEGLIMLSAAKEGEIGMAMIGGNPAEAEALAREWMAVFPDRFYLEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +R  D  +    V LA     PLVATN+  F+ +ED+ AH+  + +     +    R   
Sbjct: 173  NRPNDEEQLHGAVALADKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FSDLP+A+ENTVEIA+RC+  +++    LP +   +   I    
Sbjct: 233  YSDQQYLKSAEEMAELFSDLPDAIENTVEIAKRCNIDVKLGKHFLPDYPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRL-----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RL                Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV RA    +   DRL K+IP +
Sbjct: 409  CMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSFGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVD 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +         +D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   HP      + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELAYPHPDYQYEGLQPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G + N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F V
Sbjct: 768  LVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  RI Y L AIKGVG      I EA    PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  NDEGRIVYGLGAIKGVGEGPVEAITEARQAGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            ALD  G                +R  LL +++   K A+   + R + H ++F       
Sbjct: 888  ALDRLGPYFHDEQKAYQANIDRNRAVLLAAMEEAIKSAEQTARTRDSGHADLFGGLFVEE 947

Query: 935  SDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               +     K        R + E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  DADVYAVHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A M+++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 Q--TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045


>gi|110804236|ref|YP_687756.1| DNA polymerase III subunit alpha [Shigella flexneri 5 str. 8401]
 gi|110613784|gb|ABF02451.1| DNA polymerase III, alpha subunit [Shigella flexneri 5 str. 8401]
          Length = 1127

 Score = 1075 bits (2780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1015 (40%), Positives = 599/1015 (59%), Gaps = 38/1015 (3%)

Query: 39   DQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS 98
               PA+AITD  NL   ++F      AGI+PI+G   ++          Q       +  
Sbjct: 1    MGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV----------QCDLLGDELTH 50

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            + +L +   GYQ L  L+S+ Y    G     I   WL E+  EGLI+L+GG  G + R+
Sbjct: 51   LTVLAANNTGYQNLALLISKAYQRGYGAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRS 109

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNS 217
                +S + ++ +  +++ F DR ++ L R    D        V+LA    LP+VATN+ 
Sbjct: 110  LLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDV 169

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
             F+   D++AH++ +A+     +    RP   +P  Y+++  EM  +F+D+PEAL NTVE
Sbjct: 170  RFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVE 229

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYH 333
            IA+RC+  +++    LP+F   +        E+ L  +A  GLE RLA        +   
Sbjct: 230  IAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGLEERLAFLFPDEEERLKR 284

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL IT
Sbjct: 285  RPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKIT 344

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            D+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ 
Sbjct: 345  DLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMA 404

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
            AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E   AD  V  L++
Sbjct: 405  AKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALID 463

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
            +++KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDF
Sbjct: 464  MARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDF 523

Query: 574  LGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            LGL+TLT++  +L+ + +R        +D++ IP DD +++ +L    T  +FQLES GM
Sbjct: 524  LGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGM 583

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPM 681
            +  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E+I        H  +  +
Sbjct: 584  KDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKSV 643

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EEM KQ+  F  GA KNGI
Sbjct: 644  LEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGI 703

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            +  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT +MDN EK
Sbjct: 704  NAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEK 763

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-AD 859
            +     +  +  ++I+PP +N+    F V D+    Y + AIKGVG      I+EA    
Sbjct: 764  VVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKG 823

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
              F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A    K  
Sbjct: 824  GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAE 883

Query: 920  TNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                 ++F    +     + +          V  + E+  LG Y +GHP++ Y   + + 
Sbjct: 884  AIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERY 943

Query: 979  -GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 944  VGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 998


>gi|220928884|ref|YP_002505793.1| DNA polymerase III DnaE [Clostridium cellulolyticum H10]
 gi|219999212|gb|ACL75813.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10]
          Length = 1159

 Score = 1075 bits (2780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1059 (35%), Positives = 599/1059 (56%), Gaps = 55/1059 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL VH+ YSLL+GA  + +++ ++      ++AITD   ++  +EF ++A   GI+P
Sbjct: 3    NFVHLHVHTEYSLLDGANRIKDLIQRVKELGMDSVAITDHGVMYGVVEFYKEAVENGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTP--FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            I+GC++        K T Q K P        +VLL     GY+ L+++VS  +       
Sbjct: 63   ILGCEVYTA-----KRTMQDKQPGIDSDYGHLVLLAKNQIGYKNLMKIVSLGFTEG-YYY 116

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
              R+    L+   +EG+I L+   SG I  A   N  + A +      ++F     Y+ L
Sbjct: 117  KPRVDYETLERY-SEGIIALSACLSGDIPSAILSNDYEKAVELANRLNRIFGQGNFYLEL 175

Query: 187  QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q +   ++      +++++    +PLVATN++ +L++E  ++H++L+ +     ++  +R
Sbjct: 176  QHNGINEQNLVNQHLIKMSGELGIPLVATNDAHYLTKESAKSHEILLCIQTGKTINDDNR 235

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R   D  Y+K+  EM   F ++ +ALENTV+IA  C+  L+     LP F  +E     
Sbjct: 236  MRFNTDEVYVKSPEEMYDNFKNIKQALENTVKIAEMCNVELEFGKLHLPSFDVEEG---- 291

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  LR +   GL+ R  +        +++   RL++EL+VI++M +  YFLIV DFI
Sbjct: 292  YTPYEYLREQCYKGLKSRYGESC------SEEIVHRLEYELSVISQMGYVDYFLIVWDFI 345

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+  +I VGPGRGS AGS+ +YAL IT IDPL+++LLFERFLNP+R+SMPD DIDFC 
Sbjct: 346  RYARDQDIMVGPGRGSAAGSIVSYALGITSIDPLKYNLLFERFLNPERISMPDIDIDFCY 405

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YV  KYG +RV+QIITFG++ A+A +RDVGRAL +PY  VD + K+IP    
Sbjct: 406  ERRQEVIDYVIRKYGKDRVSQIITFGTMAARAVIRDVGRALDIPYGDVDAIAKMIPFQIG 465

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  +   ++    D     L++ ++ LEGL RHASTHAAG+VI   P+ + VP
Sbjct: 466  MNID-KALELNQELKKRYDTDEETQVLIDTARTLEGLPRHASTHAAGVVISKEPIVEYVP 524

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +   +  +   TQ     +E+ GL+K DFLGL+TLT+++ ++D + Q  G K+D+  I F
Sbjct: 525  LQ--LNDNSVTTQVTAVPLEELGLLKMDFLGLRTLTVIRDAVDLVEQGHGRKIDIQQIDF 582

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD + Y ++    T+G+FQLES+GM Q ++ +QP  +EDIIA +SLYRPGP+D I  Y  
Sbjct: 583  DDKDVYKMIGEGRTVGVFQLESAGMTQFMKELQPTSLEDIIAGISLYRPGPMDQIPRYIR 642

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             KN  + I   HP+++ +L  T G ++YQEQVMQI + L GYS+  +D++RRAM KK   
Sbjct: 643  NKNNPKHIRYHHPMLEKILDVTYGCMVYQEQVMQIVRELGGYSMGRSDLVRRAMSKKKIS 702

Query: 724  EMDKQKERFISGA------------SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             M+++++ FI G              KNG+ +  A  IF+ +  FA Y FNKSHAAAYAV
Sbjct: 703  VMEQERKNFIYGITDEEGNEIVKGAVKNGVDEITANKIFDEMMDFASYAFNKSHAAAYAV 762

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTAW+K +YP+EF+AAS+   + + +K+ ++  + +  NI+++PP +N   V F V 
Sbjct: 763  VAYQTAWLKFYYPIEFMAASINSFLGSSDKVSQYVNECKILNIKVLPPDINESNVKFTVI 822

Query: 832  DNRIYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            +  I + LAAIK VG    +  I+E   +  F S  DFC R++ + +N+R +ESL+ +GA
Sbjct: 823  NKNIRFGLAAIKNVGENAIKSVIVERQQNGEFKSFLDFCQRIEGRDINKRCIESLIKSGA 882

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSS 949
             D     R +L+   + +        K   +   +IF          +          ++
Sbjct: 883  FDSLKVFRSKLMAVYERLLDGISQNRKKNMDGQLSIFDMMSEPQELLQEDYPDIKEYPAN 942

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYEESVATIRGNN-------------- 994
            V    E+ +LG Y SGHPL  Y+ IL   + +   E  + T   +N              
Sbjct: 943  VLLAMEKEMLGLYVSGHPLSEYQDILETNVNLYSSEMFIDTDENSNDIELNSKKLQDSMK 1002

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +  +VVSK+ K T+  + + +V   +     E   FP
Sbjct: 1003 VTVGGIVVSKKTKATKNNNLMAFVGLEDLYGTMELIVFP 1041


>gi|330896075|gb|EGH28296.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. japonica
            str. M301072PT]
 gi|330975384|gb|EGH75450.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aptata
            str. DSM 50252]
          Length = 1173

 Score = 1075 bits (2780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1060 (39%), Positives = 607/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173  NRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA               Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVD 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +         +D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F V
Sbjct: 768  LVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              D RI Y L AIKGVG      I +A  D PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  SDDGRILYGLGAIKGVGEGPVEAITDARQDGPFKDLFDFCARVDLKRVNKRTLDGLIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KG 932
            ALD  G                +R  LL +L+   + A+   ++  + H ++F     + 
Sbjct: 888  ALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFVEA 947

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  DADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 Q--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|239906002|ref|YP_002952741.1| DNA polymerase III alpha subunit [Desulfovibrio magneticus RS-1]
 gi|239795866|dbj|BAH74855.1| DNA polymerase III alpha subunit [Desulfovibrio magneticus RS-1]
          Length = 1154

 Score = 1075 bits (2780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1037 (39%), Positives = 600/1037 (57%), Gaps = 29/1037 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL  H+ YSLL+GA+ + +++    +   PA AITD  NL  AL F   A  A ++
Sbjct: 2    PDFVHLHCHTEYSLLDGAIRIGDLVKTAKSFNSPAAAITDHGNLHGALIFYDAAKKAELK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC++ +                     +VLL     GY+ L++L +  +        
Sbjct: 62   PIIGCEVYVSPTSRRDRDP-----RTPRYHLVLLAQNMTGYKNLLKLATLGHTEGM-YYK 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L + G EGLI L+    G I++         A      +  LF DR Y+ +Q 
Sbjct: 116  PRVDKELLGQYG-EGLIALSACIKGEINQKLLKEGKDQARAMAKEYASLFPDRFYLEIQA 174

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++      ++ L+    LPLVATN+  +L  +D EAHDVL+ +  +  V    R R
Sbjct: 175  NEIPEQAIINDFLIDLSDDMGLPLVATNDCHYLRADDAEAHDVLLCIQTAACVDDVKRMR 234

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             T    Y ++  EM + F+ +P+A+ N+ EIA R +  L+      P +         K 
Sbjct: 235  FTTQDLYYRSPDEMAAAFAHVPQAIANSCEIAERINLQLKFGDYHFPVYKSPPG----KS 290

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  + + A  GL  RL++    +G   + Y  RL+ EL+VI +M F GYFLIV DFI W
Sbjct: 291  LDEVMADLARKGLTERLSKM---QGADPKRYWDRLELELDVIKQMGFPGYFLIVQDFINW 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + IPVGPGRGS AGS+ AYAL IT++DPL + LLFERFLN +R+SMPD D+DFC+ R
Sbjct: 348  AKNHGIPVGPGRGSAAGSLVAYALRITNLDPLPYDLLFERFLNIERVSMPDIDVDFCERR 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVIRYV   YG E VAQI TFG+++AKA +RDVGRAL M + + DR+ KLIP D    
Sbjct: 408  RHEVIRYVTEHYGEEAVAQITTFGTMKAKAVVRDVGRALGMSFGETDRIAKLIPEDLKMT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+A +   +     D  V +L+++S++LEGL RHASTHAAG+V+ D  +++ VP+Y
Sbjct: 468  ID-KALAQEPELKTLMAQDGRVAKLIDVSRRLEGLARHASTHAAGVVVSDTAMTEYVPLY 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            +   ++  VTQ++MK +EKAGL+KFDFLGLKT+T++  +L  + +      DL  +PF D
Sbjct: 527  KGKNNET-VTQWDMKRVEKAGLVKFDFLGLKTMTVIDDTLQIIREMGEEPPDLDTLPFTD 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
              TY L     T GIFQ+ES GMR+ L  ++P+C EDIIA+++LYRPGP+ + +V  +  
Sbjct: 586  EATYELFAKGDTDGIFQVESQGMRKYLRMLKPNCFEDIIAMLALYRPGPLGSGMVELFIR 645

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G++ +   HPL++  LK T GVI+YQEQVM+IAQ+L+ +SL   D+LRRAMGKK  E
Sbjct: 646  RKHGEDPVEYPHPLLEETLKPTYGVIVYQEQVMKIAQVLANFSLGAGDLLRRAMGKKNAE 705

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM KQ+  F+ G ++N I +  A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K HY
Sbjct: 706  EMGKQRGFFVEGCAQNDIPEKKANEIFDLMEKFAEYGFNKSHSAAYALISYHTAYLKAHY 765

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PV F+AA MT +M+N +K+ ++    R  ++ ++PP VN     F V DN+I Y LAA+K
Sbjct: 766  PVAFMAALMTSDMENQDKLLQYIAACRDNDLTLLPPDVNAGYPHFSVKDNKILYGLAAVK 825

Query: 844  GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      I+ A  +  PF SL DF SRV+ +K+ +RV+E L+  GA D FG +R  L 
Sbjct: 826  NVGRDAVAEIVAAREEGGPFTSLLDFTSRVNMRKITKRVIEYLIKCGACDSFGCTRAGLA 885

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL------EKFSVENSSVRFENEQ 956
              LD      Q     + +   ++           + L       +    +       E+
Sbjct: 886  AGLDQAAAIGQRRAAEKNDGRLSLMTLMPEKPKPTVGLGLSCAEAELPEWHHEEMMAFEK 945

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LGFY + HPL  Y+  LR M +    +      G  ++LA + VS ++  T+KG ++ 
Sbjct: 946  EALGFYLTSHPLLAYERDLRAMRLTTIAQCDGMEPGVEVKLACICVSTKEIITKKGQKMA 1005

Query: 1017 WVTFSE-PAKEYEANFF 1032
            +    +    E EA  F
Sbjct: 1006 FCKLEDHLGGEAEAVVF 1022


>gi|148381315|ref|YP_001255856.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str. ATCC
            3502]
 gi|153930894|ref|YP_001385691.1| DNA polymerase III DnaE [Clostridium botulinum A str. ATCC 19397]
 gi|153935249|ref|YP_001389097.1| DNA polymerase III DnaE [Clostridium botulinum A str. Hall]
 gi|148290799|emb|CAL84933.1| DNA polymerase III alpha subunit [Clostridium botulinum A str. ATCC
            3502]
 gi|152926938|gb|ABS32438.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str. ATCC
            19397]
 gi|152931163|gb|ABS36662.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str. Hall]
          Length = 1185

 Score = 1075 bits (2780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1075 (35%), Positives = 605/1075 (56%), Gaps = 55/1075 (5%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q+ EK P +V L  H+ YSLL+ +  +++++ +       +IAITD   ++  ++F ++
Sbjct: 4    NQFDEKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKE 63

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   GI+PIIGC++ +  +    M  + +        +VLLV    GY+ L+E+VS+  +
Sbjct: 64   AIKQGIKPIIGCEIYVASKS---MYIKQQDKENETHHLVLLVKNEIGYKNLMEIVSKASV 120

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                    R+   +L++  +EGLI L+    G +       + + AE+  L +K +F + 
Sbjct: 121  EG-FYYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLEKAEEVALIYKDIFKEG 178

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ LQ H   ++ + ++ +V+++   ++PLVATN+  ++ +EDY++HD+L+ +     V
Sbjct: 179  FYLELQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTV 238

Query: 241  SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +++R R   D  YLK+  EM   FS +PEALENTV+I+  C+F    H   LP+F  +E
Sbjct: 239  EEENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEE 298

Query: 300  CDDIQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYR-------------QRLDFE 344
              D        LR     GL +R    +  I K +   +               +RL++E
Sbjct: 299  GVDPY----EYLREICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNYE 354

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L++I +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+F
Sbjct: 355  LSIIQQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIF 414

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNPDR+SMPD D DFC +RR EVI YV  KYG E V+QIITFG++ A+A +RDVGRA
Sbjct: 415  ERFLNPDRISMPDIDSDFCYERRGEVIDYVVEKYGKENVSQIITFGTMAARACIRDVGRA 474

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            +  PY++VDR+ K+IP      ++ +A+  +   +E    +  V  L+++++ LEGL RH
Sbjct: 475  MNYPYAEVDRIAKMIPTVLNITIN-KALELNPELKEVYDNEERVRELIDVARALEGLPRH 533

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             STHAAG+VI  +PL   VP+ R    +  VTQF M  +E+ GL+K DFLGL+TLT+++ 
Sbjct: 534  TSTHAAGVVIASQPLVNYVPLQR--NEESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRD 591

Query: 585  SLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++  + + + + +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +EDI
Sbjct: 592  AVRIIKENKEINIDLDNIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDI 651

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            IA +SLYRPGP+  I  Y   KN    I      ++P+L  T   I+YQEQVMQI + L+
Sbjct: 652  IAGISLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDLA 711

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAK 755
            GYS+  +D++RRAM KK  + M++++  FI         G   NGI + +A ++F+ +  
Sbjct: 712  GYSMGRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMMD 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSHAAAYAV+ +QTA++  +YP EF+AA +     + +K+  +   A+   I+
Sbjct: 772  FASYAFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGIE 831

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDS 874
            I+ P++N    +F V DNRI + L A+K VG     +I+ +   K  F  L DF ++VD+
Sbjct: 832  IIAPNINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVDT 891

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKG 932
              +N+R++ESL+ AGA DC    R ++L   + I    Q  ++N      N+F    +  
Sbjct: 892  SIINKRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNK 951

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-- 990
              S  I        +     + E+ + G YFSGHPL+ Y+  L+        + +     
Sbjct: 952  ESSIDIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKESL 1011

Query: 991  ------------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                         G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1012 EGNLVDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|149201165|ref|ZP_01878140.1| DNA polymerase III subunit alpha [Roseovarius sp. TM1035]
 gi|149145498|gb|EDM33524.1| DNA polymerase III subunit alpha [Roseovarius sp. TM1035]
          Length = 1166

 Score = 1074 bits (2779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 499/1057 (47%), Positives = 682/1057 (64%), Gaps = 47/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VH+ YSLLEGA+ L  +     A   PA+A+TDTNN+F+ALEFS  A  
Sbjct: 1    MSADPRFIHLRVHTEYSLLEGAMRLKKLPGLCVAAGMPAVAVTDTNNMFAALEFSVSAQG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+           G+   P  P +VLL  +  GY+ L++L S +YL   
Sbjct: 61   AGVQPIMGCQVDLAYLS----LAPGERAKPPAP-LVLLAQSECGYENLMKLNSCLYLRGD 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     + L+ L     EG+I LTGG  GP+ R         AE  +    + FGDRLYV
Sbjct: 116  G-SLPHVTLTELAH-HAEGVICLTGGPDGPVGRLLQGGQRPAAEALMQRLAQAFGDRLYV 173

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       +R  E  ++++AY   LPLVATN+  F   + YEAHD ++ VA   
Sbjct: 174  ELQRHPGDGGAPEAERLTERGLIEMAYAMGLPLVATNDVYFPKSDMYEAHDAMLCVAEGA 233

Query: 239  VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q   R R+TP HY K++ EM ++F+DLPEALENTVEIARRC+F      PILP+F +
Sbjct: 234  YVDQSAPRRRLTPQHYFKSQEEMAALFADLPEALENTVEIARRCAFGAYKRNPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E +        ELR +A A   +      I      +DY +RL+FEL +I  M F GYF
Sbjct: 294  DEVE--------ELRRQARA--GLAARLAVIPHAAPVEDYDKRLEFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG +RV QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIQYVQEKYGRDRVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+ +A+AD+ R RE    +  VDRLL  +Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALADEPRLREEAKNEEVVDRLLTYAQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----- 591
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + +     
Sbjct: 524  RPLDALVPVYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDMIRKAGRPL 583

Query: 592  -------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                          G + D+  IP DD ++Y L  +  T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  NVAADGTVLYDPPEGFEYDIGAIPLDDEKSYRLYASAKTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG  ++ SIHP ID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPTYCEVKNGLRELESIHPSIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  GA +NG+ K  A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMENGVDKKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++  ++   
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLSLPWA 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
             P VN     F V    ++Y+L A+K VG    + I     ++PF +L D   RVD K++
Sbjct: 824  APCVNRSEATFDVQGGVLHYALGALKNVGVEAMKLITVGRGNRPFATLYDVAQRVDLKRV 883

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE L  AGA D    +R ++ +S++ +  Y+  + + + +   ++F  E G    +
Sbjct: 884  GKRPLEMLARAGAFDALDRNRRRVFESIEALMSYSAAIHEQKNSSQVSLFG-EAGDDLPE 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--I 995
              L        + R   E + +GFY SGHPLD Y  +LR+  +K  +E  A        +
Sbjct: 943  PRLAPVDDWLPAERLTEEFKAVGFYLSGHPLDDYMTVLRRQDVKTLDEVTAQAERGPALV 1002

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++A +V  +Q++K+ +G+R  +   S+    YE   F
Sbjct: 1003 KMAGVVAGRQERKSARGNRFAFAQLSDTTGGYEVTLF 1039


>gi|158521896|ref|YP_001529766.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3]
 gi|158510722|gb|ABW67689.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3]
          Length = 1182

 Score = 1074 bits (2779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1035 (36%), Positives = 589/1035 (56%), Gaps = 23/1035 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL VH++YSLL+G + +  ++ +       A+AITD   +F  + F ++A  AGI+
Sbjct: 8    PDFVHLHVHTAYSLLDGIIRIEALMKRAVEYGMGAVAITDHGTMFGVVSFYKEAVKAGIK 67

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P+IGC+  +  +    +T++       +  +VLL  T EGY+ L  L S   L       
Sbjct: 68   PVIGCECYVAPRS---ITDRTPMDHDGLSHLVLLAETMEGYRNLCHLASIASLKG-FYHK 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQ 187
             RI    L++ G  GLI L+    G + +     +++ A++    +++  G+   ++ +Q
Sbjct: 124  PRIDKELLKQYGN-GLIGLSACLKGEVAQRLLEGNTEAADRAARFYQEALGENSFFLEVQ 182

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   ++ R  + + +++    +PLV TN+  +L  ED+  HD+ + +     +   DR 
Sbjct: 183  NNGIPEQTRLNAALREMSDRLSIPLVGTNDCHYLDREDHNIHDLSLCLQTGKTIHDADRF 242

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R   D    K + EM +     P A  NTV IA RC+  L       P F         K
Sbjct: 243  RFETDQLNFKPKHEMCTFLEPFPNAATNTVAIADRCNVELDFKTLHFPVFATPPG----K 298

Query: 306  EEENELRNKAVAGLEVRLAQGAIA-KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              +         G   RL   A     +  + Y +RL+FEL+VI  M F  YFLIVADFI
Sbjct: 299  TVDQLFEETVREGFARRLKAVARKNPDFDREAYDRRLEFELSVITDMGFPSYFLIVADFI 358

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
              AK+N IP+GPGRGS AGS+ +YA+ ITD+DP+   LLFERFLNP+R SMPD D+D C 
Sbjct: 359  AHAKENGIPIGPGRGSAAGSIVSYAMGITDLDPIEHGLLFERFLNPERKSMPDIDVDICI 418

Query: 425  DRRDEVIRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              R+ V  Y+  KYG  + VAQIITFGS++++A +RDVGR + +P S VDR+ KLIP + 
Sbjct: 419  IGRERVYHYLVEKYGGSDYVAQIITFGSMKSRAVIRDVGRVMGIPLSDVDRIAKLIPMNK 478

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +     +A+A++   ++   + P    L+   + LEG+ RHASTHAAG+VIGD+PL++ +
Sbjct: 479  SLD---EALAEEPDLKKLVDSRPDFAELVAAGRALEGMPRHASTHAAGVVIGDKPLTEYL 535

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIP 602
            P+Y  V+ +  +TQ++MK +E  GL+K D LGL+ LT++  +L  L Q+G +  D+S + 
Sbjct: 536  PLY-AVKENEALTQYDMKCVEAIGLVKLDLLGLRNLTVIADTLKILQQQGRQVPDMSHLD 594

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--V 660
              D +TY LL    T G+FQLES+GM++ L  ++P    DI ALV+LYRPGP+ + +   
Sbjct: 595  LADEKTYQLLCAGKTTGVFQLESTGMKELLLKLKPTTFADITALVALYRPGPMGSGMLVD 654

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   ++G++++  + P ++P+LKET GVI+YQEQVMQIAQ ++GY++  AD LR+AMGKK
Sbjct: 655  FVECRHGRKRVEYLIPELEPILKETYGVIVYQEQVMQIAQAVAGYTMGTADDLRKAMGKK 714

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I  +M + +  FI GA   GI K  A  ++E +  F +YGFNKSH+AAYA++++QTA++K
Sbjct: 715  IAAKMAEHQATFIEGALARGIDKAKAETLYEQIKFFGEYGFNKSHSAAYALVAFQTAYLK 774

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             H+PVE +AA +T   +    + KF  + R  +I+++PP +N   V F V  +R+ + L 
Sbjct: 775  AHFPVELMAALLTSSTNKTIDVVKFIAECRALDIEVLPPDINESEVAFSVVGDRLRFGLL 834

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            A+K VG      I+ E  A+  F S+ D C RV   K+N++VLESLV  GALD  G  R 
Sbjct: 835  AVKNVGEGAIEAIVEERRANGRFVSIFDLCERVPLTKVNKKVLESLVKCGALDSTGAGRA 894

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSSVRFENEQRV 958
            Q+   L++   + Q V++ + +   ++F       + +  TL      +   R   E+ V
Sbjct: 895  QMTAVLEDALAHGQTVQREKNDSQMSLFDMPGADAALNAPTLPDMPEWSDRQRLAFEKEV 954

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LGFY SGHPL  Y+ +LRK               +N+ +   +    +K T++G ++  V
Sbjct: 955  LGFYVSGHPLAAYRDVLRKYANTDALTLKEIADQSNVIIGGGITVVNRKTTKRGDQMAIV 1014

Query: 1019 TFSEPAKEYEANFFP 1033
            T  +     E   FP
Sbjct: 1015 TIEDMYGTVEVVVFP 1029


>gi|330872712|gb|EGH06861.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv.
            morsprunorum str. M302280PT]
          Length = 1173

 Score = 1074 bits (2779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1060 (39%), Positives = 608/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  + +   PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPAEADELLREWLAVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +R  D       V LA  H  PLVATN+  F+++ D+EAH+  + +     +    R   
Sbjct: 173  NRANDEEHLHAAVALAERHGAPLVATNDVRFINQTDFEAHETRVCIGEGRALDDPRRSHN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA               Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----RGVKVD 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +         +D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRERAKVDEAPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F V
Sbjct: 768  LVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              D RI Y L AIKGVG      I +A    PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  SDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KG 932
            ALD  G                +R  LL +L+   + A+   ++  + H ++F     + 
Sbjct: 888  ALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGGLFVEA 947

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  DADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 Q--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|32035303|ref|ZP_00135310.1| COG0587: DNA polymerase III, alpha subunit [Actinobacillus
            pleuropneumoniae serovar 1 str. 4074]
 gi|126208577|ref|YP_001053802.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            L20]
 gi|307263773|ref|ZP_07545379.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 13 str. N273]
 gi|126097369|gb|ABN74197.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 5b str. L20]
 gi|306870894|gb|EFN02632.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 13 str. N273]
          Length = 1158

 Score = 1074 bits (2779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1052 (39%), Positives = 613/1052 (58%), Gaps = 43/1052 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +TQ       FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  
Sbjct: 1    MTQQ-----RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYG 55

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            +A  +G++PIIG  + +  + + +              + LL     GY  +  L+S+ Y
Sbjct: 56   EALGSGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAY 105

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 +    +  +WL E+  EG+I+L+GG +G + +A    +   A++ +  +++ F +
Sbjct: 106  QQGYVEF-PLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENQAEADELVGFYQQYFPN 163

Query: 181  RLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  
Sbjct: 164  HYYLALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYT 223

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +    RP+  +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++    LP F   
Sbjct: 224  LDDPKRPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTG 283

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +        E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F G
Sbjct: 284  DL-----STEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPG 338

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SM
Sbjct: 339  YFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSM 398

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFD+DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+
Sbjct: 399  PDFDVDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRI 458

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KLIP DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI 
Sbjct: 459  SKLIPPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIA 517

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--- 592
               ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR   
Sbjct: 518  PTAITDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAR 577

Query: 593  --GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+
Sbjct: 578  EGKEPVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALF 637

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            RPGP+++ +   + +RK+G E++        H  + P+L  T GVI+YQEQVMQIAQ+L+
Sbjct: 638  RPGPLESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLA 697

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GY+L  AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNK
Sbjct: 698  GYTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNK 757

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+
Sbjct: 758  SHSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNS 817

Query: 824  PCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881
                F V +     Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR 
Sbjct: 818  GKHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRT 877

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITL 940
             E L+ +GA D  G  R  L+++L++  K +    K       ++F     T  + +   
Sbjct: 878  FEGLIMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAY 937

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                  +     E E+  LG Y SGHP+  +   L         E   T RG  + +A +
Sbjct: 938  ANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGI 997

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++  +   T++GSR+G  T  + + + +   F
Sbjct: 998  IMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|254449414|ref|ZP_05062851.1| DNA polymerase III, alpha subunit [Octadecabacter antarcticus 238]
 gi|198263820|gb|EDY88090.1| DNA polymerase III, alpha subunit [Octadecabacter antarcticus 238]
          Length = 1168

 Score = 1074 bits (2779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 503/1057 (47%), Positives = 680/1057 (64%), Gaps = 51/1057 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+ H+ YSLLEGA+ +  I         PA+A+TDTNNLF ALEFS+ A  AG+Q
Sbjct: 4    PRFIHLRTHTEYSLLEGAVPVKKICGLAEKFGMPAVAVTDTNNLFCALEFSEYAAKAGVQ 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGCQ+D+     L++   G+ P    P +V L     GY  L++L S  YL D G Q 
Sbjct: 64   PIIGCQVDL----GLRVDEPGRRPERPAP-LVFLAQNEAGYMNLMKLNSCAYL-DAGGQL 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++ +  L +   EGLI L+GG  GPI R         AE  +     +F DRLYV LQR
Sbjct: 118  PQVTVDDLAKY-NEGLICLSGGPDGPIARLLRAGQRPAAEALMAQLAAIFSDRLYVELQR 176

Query: 189  HR------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            H         ++  E   V++AY  +LPLVATN+  F     YEAHD L+ +A    V Q
Sbjct: 177  HPVDGGLPEAEQLSEQGHVEMAYAMDLPLVATNDVYFPKTSIYEAHDALICIADGAYVDQ 236

Query: 243  KD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             + R R+TP HY K++ EMV++F+DLPEA+ NTVEIA+RC+F +    PILP+F + E +
Sbjct: 237  NEPRRRLTPQHYFKSQQEMVTLFADLPEAIANTVEIAKRCAFKVYTRDPILPKFADNEIE 296

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                    EL+ +A AGL+ RL    I      +DY +RLDFEL +I  M F GYFLIVA
Sbjct: 297  --------ELKLQARAGLKNRLK--VIPHAVSVEDYEKRLDFELGIIEGMGFPGYFLIVA 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++AK N+IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDID
Sbjct: 347  DFIKFAKDNDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDID 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQ+PY QVD+L K+IP 
Sbjct: 407  FCMDRREEVIRYVQQKYGRDKVGQIITFGALLSKAAIRDVGRVLQLPYGQVDKLSKMIPV 466

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   PVS+ +A+AD+ R RE    +  VDRLL   Q+LEGL R+ASTHAAG+VIGDR L 
Sbjct: 467  EGVKPVSIVKALADEPRLREMAKNEEVVDRLLTYGQQLEGLLRNASTHAAGVVIGDRSLD 526

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ--------- 591
            +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + +         
Sbjct: 527  ELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKSGRDLHKSP 586

Query: 592  ---------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
                      G   D++ IP DD  +Y L     T+ +FQ+ESSGM  AL  M+PDCIED
Sbjct: 587  TGVELYVPAEGTLNDINAIPLDDEASYKLYAAAKTVAVFQVESSGMMDALRRMKPDCIED 646

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            IIALV+LYRPGP++NI  +   KNG      +HP ID +L ETQG+I+YQEQVMQIAQ +
Sbjct: 647  IIALVALYRPGPMENIPKFCEVKNGISDRDMLHPSIDHILDETQGIIVYQEQVMQIAQEM 706

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +GYSL  AD+LRRAMGKK++E MD +K +F++G+++NG++K  A  +++LL KFA+YGFN
Sbjct: 707  AGYSLGGADLLRRAMGKKLQEAMDVEKPKFLAGSAENGVNKKKAQEVWDLLDKFANYGFN 766

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821
            KSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++   +   PP V
Sbjct: 767  KSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLGLPWSPPCV 826

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSRVDSKKLN 878
            NT    F V D  + Y L A+K VG      I++A      KPF +L D   RVD K++ 
Sbjct: 827  NTSLATFDVQDGTLVYGLGALKNVGVDAMGLIVDARLAEGAKPFSTLFDLARRVDIKRVG 886

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            +R LE L  AGA D    +R ++  SLD +  Y+  +   + +   ++F  E G    + 
Sbjct: 887  KRPLEMLARAGAFDVLDPNRRKVFASLDALVGYSSAIHDQKNSNQVSLFG-EAGDDLPEP 945

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK-MGIKGYEESVA-TIRGNNI- 995
             L        + R   E + +GFY SGHPLD Y   L++   +   +E  A    G  + 
Sbjct: 946  RLSAVEDWLPAERLSEEFKAVGFYLSGHPLDDYMAALKRTEKVLTLDEVTAKAASGALVA 1005

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++A  V  +Q++K+ +G+R  +V  S+P  +YE   F
Sbjct: 1006 KMAGTVAGRQERKSARGNRFAFVQLSDPTGQYEVTMF 1042


>gi|307261584|ref|ZP_07543252.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 12 str. 1096]
 gi|306868707|gb|EFN00516.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 12 str. 1096]
          Length = 1158

 Score = 1074 bits (2778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1052 (39%), Positives = 613/1052 (58%), Gaps = 43/1052 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +TQ       FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  
Sbjct: 1    MTQQ-----RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYG 55

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            +A  +G++PIIG  + +  + + +              + LL     GY  +  L+S+ Y
Sbjct: 56   EALGSGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAY 105

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 +    +  +WL E+  EG+I+L+GG +G + +A    +   A++ +  +++ F +
Sbjct: 106  QQGYVEF-PLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENEAEADELVGFYQQYFPN 163

Query: 181  RLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  
Sbjct: 164  HYYLALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYT 223

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +    RP+  +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++    LP F   
Sbjct: 224  LDDPKRPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTG 283

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +        E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F G
Sbjct: 284  DL-----STEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPG 338

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SM
Sbjct: 339  YFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSM 398

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFD+DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+
Sbjct: 399  PDFDVDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRI 458

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KLIP DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI 
Sbjct: 459  SKLIPPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIA 517

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--- 592
               ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR   
Sbjct: 518  PTAITDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAR 577

Query: 593  --GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+
Sbjct: 578  EGKEPVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALF 637

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            RPGP+++ +   + +RK+G E++        H  + P+L  T GVI+YQEQVMQIAQ+L+
Sbjct: 638  RPGPLESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLA 697

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GY+L  AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNK
Sbjct: 698  GYTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNK 757

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+
Sbjct: 758  SHSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNS 817

Query: 824  PCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881
                F V +     Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR 
Sbjct: 818  GKHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRT 877

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITL 940
             E L+ +GA D  G  R  L+++L++  K +    K       ++F     T  + +   
Sbjct: 878  FEGLIMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAY 937

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                  +     E E+  LG Y SGHP+  +   L         E   T RG  + +A +
Sbjct: 938  ANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGI 997

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++  +   T++GSR+G  T  + + + +   F
Sbjct: 998  IMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|71733672|ref|YP_275963.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv.
            phaseolicola 1448A]
 gi|257487067|ref|ZP_05641108.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tabaci
            ATCC 11528]
 gi|289626019|ref|ZP_06458973.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aesculi
            str. NCPPB3681]
 gi|289651464|ref|ZP_06482807.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aesculi
            str. 2250]
 gi|71554225|gb|AAZ33436.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv.
            phaseolicola 1448A]
 gi|320323105|gb|EFW79194.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea
            str. B076]
 gi|320329623|gb|EFW85612.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea
            str. race 4]
 gi|330868557|gb|EGH03266.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aesculi
            str. 0893_23]
 gi|331009298|gb|EGH89354.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tabaci
            ATCC 11528]
          Length = 1173

 Score = 1074 bits (2778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1060 (39%), Positives = 606/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F +R Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPERFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173  NRNNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA               Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVD 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +         +D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F V
Sbjct: 768  LVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              D RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  SDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KG 932
            ALD  G                +R  LL +L+   + A+   ++  + H ++F     + 
Sbjct: 888  ALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFVEA 947

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  DADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 Q--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|206890698|ref|YP_002248167.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii
            DSM 11347]
 gi|206742636|gb|ACI21693.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii
            DSM 11347]
          Length = 1135

 Score = 1074 bits (2778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1043 (39%), Positives = 625/1043 (59%), Gaps = 52/1043 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSLL+GA+ +N ++++      PA+AITD  NLF  +EF +KA  AG++PI
Sbjct: 6    FVHLHIHTEYSLLDGAIKINELIEQAKKYNMPAVAITDHGNLFGVVEFFKKANKAGVKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPF---PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IGC++ +  Q     T   K P         + LLV   EGY+ L  LV+R YL      
Sbjct: 66   IGCEVYVAPQSRFDKTKINKDPGMPEEASFHLTLLVENEEGYKNLTRLVTRSYLEG-FYY 124

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              RI +  L     +GL+ L+G   G I     + + + AE    T K +FG+  ++ +Q
Sbjct: 125  KPRIDMELLSMY-NKGLLALSGCLKGEIPYNIVYENIERAENTAKTLKDIFGNNFFLEIQ 183

Query: 188  RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   ++   ++ +++L+   ++P+VATN+  +L + D  AH++L+ +     +  + R 
Sbjct: 184  SNSLPEQTIANRGLIELSKKFDIPVVATNDCHYLHKSDARAHEILLCIQTGKTIKDEKRL 243

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +   D  Y K+  EM S F ++PEAL+NT++IA RC+F L++    LP++   +      
Sbjct: 244  KFQSDEFYFKSPEEMYSAFVEIPEALKNTLQIAERCNFKLRLGEHKLPKYNVPQG----Y 299

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E  L+  A  GL+ R       KG  A+DY +RL+ EL VI  M F+ YFLIV DFI 
Sbjct: 300  TAEEYLKKLAQEGLKERF------KGNVAEDYIKRLEEELKVITEMGFASYFLIVWDFIN 353

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A++ +IPVGPGRGS AGS+ AYAL ITDIDP+++ LLFERFLNP+R+S+PD D+DFC+D
Sbjct: 354  YARRKSIPVGPGRGSAAGSLVAYALKITDIDPIKYGLLFERFLNPERISLPDIDVDFCKD 413

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV   YG +RVA IITFG++ A+A +RDVGRAL +PY+ VD++ K+IP   A 
Sbjct: 414  RREEVIQYVAENYGKDRVAHIITFGTMAARAVVRDVGRALNIPYADVDKIAKMIPF--AC 471

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            P   +A+  + R +E    + +V  L++I+ +LEGL RHAS HAAG+VI   PL  L+P+
Sbjct: 472  PSLEEALNLEPRLKELYNKNETVKELIDIALRLEGLARHASQHAAGVVISPEPLEDLMPL 531

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            Y++   +  ++QF+MK +E  GL+KFDFLGLKTLT++  ++ ++  +G  +DL+ IP DD
Sbjct: 532  YKNSGEETVISQFDMKALEDVGLLKFDFLGLKTLTVIDDTIKYVKAQGKDIDLNNIPLDD 591

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
             ETY LL++  T G+FQLES GM++ L+ M+P   ED+IALV+LYRPGP+ + +V  +  
Sbjct: 592  SETYRLLSSGQTTGVFQLESRGMKELLKRMEPQRFEDLIALVALYRPGPLGSGMVDDFIK 651

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK G   +    P +  +L ET GVI+YQEQVM+IA  ++G+++ +ADVLR+AMGKKI E
Sbjct: 652  RKKGLVPVEYELPELKDILDETYGVILYQEQVMKIANKIAGFTMGQADVLRKAMGKKIPE 711

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M   KE FI GA KNGI    A ++F ++A F +YGFNKSH+AAYA ++Y TA++K HY
Sbjct: 712  LMASLKEEFIQGAQKNGIPYEKAESLFNIMAAFGEYGFNKSHSAAYAYLAYITAYLKAHY 771

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P EF AA+++ EM +  KI KF  + + + I+I  P +N     F V +  I + L A+K
Sbjct: 772  PQEFFAANLSNEMGDTNKIVKFINECKAWGIEIKGPDINESDRAFTVKEKFIRFGLEAVK 831

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF----GYSRM 899
            GVG +  + I+     K F S++DF +R+D++K+N++V+ESL+ AGA D        ++ 
Sbjct: 832  GVGGSALQCILNEREKKKFTSIDDFLTRLDTRKVNKKVIESLIKAGAFDSLYPQYTPNQA 891

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            + +   + +        +        +F           T E     +++     E+  L
Sbjct: 892  RAIAMHELLSFKGVKSSR-------GLF----------FTHENIEAWDNNTVLSEEKSSL 934

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI---------RLAAMVVSKQQKKTR 1010
            GFY +GHP+   +P+L K+ +    +   T   + +         ++A +V   + K   
Sbjct: 935  GFYLTGHPMKPLRPVLNKINVSTIADIFDTDEDDFVNNNEETHEIKIAGIVEEIKSKAKE 994

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
            KG    ++T  +     E   +P
Sbjct: 995  KGVT-AYITIEDETGRVEVVIYP 1016


>gi|218665927|ref|YP_002425889.1| DNA polymerase III, alpha subunit [Acidithiobacillus ferrooxidans
            ATCC 23270]
 gi|218518140|gb|ACK78726.1| DNA polymerase III, alpha subunit [Acidithiobacillus ferrooxidans
            ATCC 23270]
          Length = 1166

 Score = 1074 bits (2778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 434/1037 (41%), Positives = 627/1037 (60%), Gaps = 33/1037 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            ++P FVHL VHS YSL +G + +  +  + A    PA+AITD  NLF+ ++F   A   G
Sbjct: 2    RTPQFVHLHVHSEYSLEDGIIPVKALARRCAERGMPAVAITDHGNLFALVKFYNAARGQG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P+IG ++ +                    S+VLL     GY+ L  L+SR YL     
Sbjct: 62   VKPLIGSEVWVH----------DVAEPERPVSLVLLCMDKTGYRNLSRLLSRAYLEGSRH 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               +I ++WL E  ++GLI L+    G I RA      Q AE R   + +LF +R Y+ +
Sbjct: 112  GRPQIDVAWL-EGSSDGLIALSAAGQGEIGRA-LQRHPQQAESRARYYARLFPERFYLEV 169

Query: 187  QRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+   ++    Q  V LA   +LPLVATNN+ FL   D+ A D    ++    +    R
Sbjct: 170  QRNGEAEQEALVQATVALAEKLDLPLVATNNAHFLDAADFAAFDARQCISAGFTLDDPRR 229

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP+H L +  EM   F+DLPEA +NTVEIARRC+  L +    LP +         
Sbjct: 230  PRRFTPEHRLPDPEEMRERFADLPEACDNTVEIARRCNMELVLGHYALPDYPIP----AN 285

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +  +  L + A  GL+ RL +  I  G     Y +RL  E+ VI +M F GYFLIVADFI
Sbjct: 286  QSVDEYLHDAAQKGLQERLQELRIT-GDATLPYHERLLREVGVIQQMGFPGYFLIVADFI 344

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            QWAK N +PVGPGRGSGAGS+ AYAL ITD+DP+   LLFERFLNP+R+SMPDFD+DFC 
Sbjct: 345  QWAKNNGVPVGPGRGSGAGSLVAYALRITDLDPIGNGLLFERFLNPERVSMPDFDVDFCM 404

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D+RD VI+YV +KYG +RV QIITFG+++A+A +RDVGR L +PY  VD+L KL+P D  
Sbjct: 405  DQRDRVIQYVADKYGRDRVGQIITFGTMKARAVVRDVGRVLGLPYGFVDQLAKLVPGDLG 464

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+ +    R  +  +  V  LL+I+ +LEGL RHASTHA G+VI   PL+  +P
Sbjct: 465  MTL-AKALEESEELRRRQAEEDDVRDLLDIALRLEGLPRHASTHAGGVVISPEPLADRLP 523

Query: 545  MYRD-VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKVDL 598
            ++ D       VTQ +   +EK GL+KFDFLGL+TLT++  ++  +           VD+
Sbjct: 524  LFNDGSEGGGNVTQLDKDDVEKMGLVKFDFLGLRTLTIIDMAVKLINADAAAAGRAPVDI 583

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  T+ LL +  T  +FQLESSGMR  +  +QPD  EDI+ALV+L+RPGP+ + 
Sbjct: 584  QQLPLDDAATFALLKSTETAAVFQLESSGMRDLVRRLQPDTFEDIVALVALFRPGPLQSG 643

Query: 659  VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V  +  RK+GK ++  +HP + P+L+ET GVI+YQEQVMQ AQ L+GYSL  AD+LRRA
Sbjct: 644  MVDDFIARKHGKAQVTYLHPDLAPILRETYGVIVYQEQVMQSAQALAGYSLGGADLLRRA 703

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  EEM KQ+  F+ GA KNG++   A  IF+L+ KFA+YGFNKSH+AAYA++SYQT
Sbjct: 704  MGKKKPEEMAKQRSIFLEGAHKNGLAADQAGAIFDLMEKFAEYGFNKSHSAAYALVSYQT 763

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRI 835
            A++K HYP  F++A +T +MD+ +K+     +  +  ++I PPSV    ++F+  GD+ I
Sbjct: 764  AYLKAHYPQFFMSAVLTADMDHTDKVVAMIAECARMGLRIAPPSVQHSVLEFRPEGDDHI 823

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             + L AIKG+G    + I++A     F +L D   RVD++K+NRR LE+L+ AGA+D +G
Sbjct: 824  RFGLGAIKGLGRAAIQAILDARRGGAFLNLFDLLCRVDTQKINRRALEALIRAGAMDDWG 883

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR  L+ S+D   + A   + ++ +  E++F+ ++        L      + +     E
Sbjct: 884  VSRASLIASVDGCMEAAAQFQSSQASLQESLFSGQEA-LRVAPPLVSAEAWSLTETLRQE 942

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LGFY SGHP+D  +  L  +G     +      G+ + +A +VV+++  +T++G RI
Sbjct: 943  RETLGFYLSGHPMDSLRDDLTALGTIPLGD---VAVGSTVLVAGLVVARRSTRTKRGDRI 999

Query: 1016 GWVTFSEPAKEYEANFF 1032
             ++T  +     E   F
Sbjct: 1000 YFLTLDDGQGRLEVVVF 1016


>gi|330985125|gb|EGH83228.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. lachrymans
            str. M301315]
          Length = 1173

 Score = 1074 bits (2778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1060 (39%), Positives = 607/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F +R Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPERFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173  NRNNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA               Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLLPKDTTEDYEARRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEDPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F V
Sbjct: 768  LVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              D RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  SDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KG 932
            ALD  G                +R  LL +L+   + A+   ++  + H ++F     + 
Sbjct: 888  ALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFVEA 947

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  DADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 Q--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|331268630|ref|YP_004395122.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925]
 gi|329125180|gb|AEB75125.1| DNA polymerase III, alpha subunit [Clostridium botulinum BKT015925]
          Length = 1168

 Score = 1074 bits (2778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1062 (35%), Positives = 596/1062 (56%), Gaps = 57/1062 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  H+ YSLL+G+  +  ++ +       ++AITD   +F  ++F +KA  AGI+P
Sbjct: 7    NFVHLHTHTEYSLLDGSGKIGGLISRAKELGMKSLAITDHGTMFGCVDFYKKAKEAGIKP 66

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +       M  +          +VLLV   +GY+ L+++VS+  + D      
Sbjct: 67   IIGCEIYVASNS---MHIKRLDSENRNHHLVLLVKNEQGYKNLMKIVSKAAI-DGFYYKP 122

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+   +L+E  +EGLI L+   +G +       +   A +  L +K +F +  Y+ LQ H
Sbjct: 123  RVDHEYLKE-HSEGLIALSACLAGEVSYNLLNGTKDKAREVALFYKDIFKEGFYIELQYH 181

Query: 190  RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                + R ++ +V+LA   ++PLVATN+  ++ +ED ++H+VL+ +     +  +DR R 
Sbjct: 182  GIDKQLRVNEMLVELARELDIPLVATNDVHYIKKEDAKSHEVLLCIQTGKTLDDEDRMRY 241

Query: 249  TPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             P   YLK+  EM   FS + EALENT +IA  C+F    H   LP F   E  D     
Sbjct: 242  EPQKFYLKSPEEMYETFSYVSEALENTNKIADECNFDYVFHESKLPNFPLPEGAD----H 297

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               ++     GLEVR  +          + ++RL++EL VI +M +  YFLIV DF +++
Sbjct: 298  FEYMKELCYKGLEVRYLE-------VTDELKERLEYELGVIKQMGYVDYFLIVWDFFRFS 350

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I  GPGRGS AGS+ AY L IT IDP++++L+FERFLNP+R+SMPD D DFC +RR
Sbjct: 351  HEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDFCYERR 410

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG E V+QI+TFG++  +A +RDVGRA+   Y++VDR+ K+IP      +
Sbjct: 411  GEVIDYVVEKYGKENVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTVLGITI 470

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   +E    D  +  L+++++ LEGL RH STHAAG+VI  +PL   VP+ +
Sbjct: 471  D-KALEMNPELKEVYDKDMRIKELIDVARDLEGLPRHTSTHAAGVVIASQPLVSYVPLSK 529

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                +  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + +    K+DL  I F+D 
Sbjct: 530  --NEEAIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIELIKKNTGTKIDLDKINFEDE 587

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y++L    T+G+FQLES+GM   ++ ++P+ +EDIIA +SLYRPGP+  I  Y   KN
Sbjct: 588  NVYNMLGRGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAEIPKYIKNKN 647

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              + I  I P ++ +L  T GV++YQEQVMQI + L+GYS+  +D++RRAM KK  + M+
Sbjct: 648  NPKNIEYITPKLEGILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHKVME 707

Query: 727  KQKERFISGASK-----------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            ++++ FI G  +           NGIS+  A  I++ +  FA Y FNKSHAAAYAV++Y 
Sbjct: 708  EERKNFIYGIEEDGKVVVPGCLRNGISEDAANKIYDQMMDFASYAFNKSHAAAYAVVAYY 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++  +YP EF+AA +     N +K+  + + A+Q +I+ +PP +N     F V + +I
Sbjct: 768  TAYLVHYYPTEFMAAMLNSVRGNSDKVAIYIRAAKQMDIETLPPDINKSFGKFTVQNGKI 827

Query: 836  YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+AIK VG      I+++  +   F+S  DFC+++    +N+R++ESL+ AG  DCF
Sbjct: 828  RFGLSAIKNVGENIIDVIVKSREEKGEFNSFVDFCNKISMGSINKRMVESLIKAGVFDCF 887

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFE 953
            G  R QLL   + I        K       ++F      F D +I        N   +  
Sbjct: 888  GIYRSQLLAVYEKIIDSVVNQRKKNIEGQVSLFGSFDNEFKDTEIKYPAIDEFNKKSKLA 947

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV----------------------ATIR 991
             E+ + G Y +GHPL+ Y+ IL+        + +                          
Sbjct: 948  MEKEMTGLYLTGHPLEDYEEILKNATSAKTTDIIIDESLEENLIDEVSLHVEEQNSKIKD 1007

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            G+ + +  ++ +  +K T+  S + ++T  +     E   FP
Sbjct: 1008 GDKVIIGGLITNVTRKITKTNSMMAFITLEDLYSSIEVIIFP 1049


>gi|94986701|ref|YP_594634.1| DNA polymerase III, alpha subunit [Lawsonia intracellularis
            PHE/MN1-00]
 gi|94730950|emb|CAJ54313.1| DNA polymerase III, alpha subunit [Lawsonia intracellularis
            PHE/MN1-00]
          Length = 1169

 Score = 1074 bits (2778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1044 (40%), Positives = 621/1044 (59%), Gaps = 33/1044 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  HS YSLL+GA+ L+ +  +      PA A+TD  NLF+A  F       GI+P
Sbjct: 3    NFVHLHCHSEYSLLDGAIRLDALCARTKEFGMPAAAVTDHGNLFAATHFYSICKEYGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +      K++   K        ++LL    EGY  L++LV+R YL D      
Sbjct: 63   IIGCEVYVTKDHADKLSKFSK----ARHHLILLARNKEGYHNLVKLVTRGYL-DGFHYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF--------NSSQVAEKRLLTFKKLFGDR 181
            R+  + L++  + G+  L+   +G + R             +   A      +  ++  +
Sbjct: 118  RVDKTLLKQFSS-GITALSACLAGELPRTIMGKNIFVEKGGTFDDAISIAQEYASIYPGQ 176

Query: 182  LYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ +Q +   ++ +   ++ +LA    LPLVATN+  +L+ +D EAHD+L+ V      
Sbjct: 177  FYLEVQANMLPEQQKVNEKLYELAEYTNLPLVATNDCHYLNADDVEAHDILLCVQTQAKF 236

Query: 241  SQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +  DR R    D Y K+  EM   FS LP A+ENT++IA  CS  +     + P +   +
Sbjct: 237  NDTDRMRFNATDLYYKSSEEMEKAFSHLPIAIENTIKIAESCSVEMDFSKNLFPVYELPK 296

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                    ++E R  A  GL+ RL      K    ++Y +RL+ EL++I +M F GYFLI
Sbjct: 297  G----VTPDDEFRRLAREGLQKRLEVYPNKKQLTTENYWKRLEQELDIICKMGFPGYFLI 352

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI WAK NNIPVGPGRGS  GS+ A+AL IT+IDPL ++LLFERFLN +R+S+PD D
Sbjct: 353  VQDFINWAKDNNIPVGPGRGSATGSLVAWALRITNIDPLPYNLLFERFLNIERISLPDID 412

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC+D+R +VIRYV NKYG   VAQI TFG ++AKA +RD+GR L M + + D + KLI
Sbjct: 413  VDFCEDKRGDVIRYVMNKYGVNSVAQITTFGKMKAKAVVRDIGRVLDMSFKETDNIAKLI 472

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P+D    + L+A+  + + +     +P + RLL+IS KLEGL RHASTHAAG+V+ D+P+
Sbjct: 473  PDDLHMTI-LKAMEVEPKLQALYNEEPHIKRLLDISMKLEGLVRHASTHAAGVVVSDKPM 531

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDL 598
             + +P+YR  + +L VTQF+MK +EK GL+KFDFLGL+T+TL+  +L  +  Q  +  +L
Sbjct: 532  DEYLPLYRGKKGEL-VTQFDMKMVEKVGLVKFDFLGLRTMTLIHTTLKTIKDQGKIPPNL 590

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD +TY LL+   T G+FQ+ESSGMRQ L  ++P+C ED+IA+++LYRPGP+ + 
Sbjct: 591  DTLPLDDPKTYELLSKGDTDGVFQVESSGMRQYLRMLKPNCFEDLIAMLALYRPGPLGSG 650

Query: 659  VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V  +  RK+G   I    P +   LK+T GVI+YQEQVMQIAQ+++GYSL EAD+LRRA
Sbjct: 651  MVDEFIKRKHGTVTIEYPLPSLKDCLKDTYGVIVYQEQVMQIAQIVAGYSLGEADLLRRA 710

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  E M K++ RF+ GA KN ++++IA +IF+L+ KFA+YGFNKSH+AAYA+ISY T
Sbjct: 711  MGKKNPEAMAKERTRFVEGAIKNNVTESIASDIFDLMEKFAEYGFNKSHSAAYALISYHT 770

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K H+ +EF+AA +T E  N  KI K+    +   I I+ P + T C +F V DN I 
Sbjct: 771  AYLKAHFTLEFMAALLTSESGNQNKILKYTAACKDMGIDILKPDIQTSCREFIVKDNSIV 830

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            + L AIK VG      I+     D PF SL D   RV+ KK+ RRVLESLV  GA D FG
Sbjct: 831  FGLCAIKNVGDDAIEKIITTRKKDGPFLSLLDMSFRVNLKKVTRRVLESLVKGGACDSFG 890

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-------LEKFSVENS 948
             SR  +L +LD I        K+  +   ++ A      S  +         +     + 
Sbjct: 891  CSRAGMLTALDKIIARTYKKIKDEQSNQGSLLAFAPKIESVSLPGIGFTCEEQNMPEWDE 950

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              +   E+  LGF+ + HPL  Y+  + ++G++  EE         I+ A +V + ++  
Sbjct: 951  DEKLLYEKEALGFFLTSHPLQTYRQEIYRLGLQPLEEVREMNDKITIKSAIIVNNIREIL 1010

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
             ++G+R+ +V   +     E  FF
Sbjct: 1011 NKRGNRMAFVRVEDLTASAEVTFF 1034


>gi|29654634|ref|NP_820326.1| DNA polymerase III alpha subunit [Coxiella burnetii RSA 493]
 gi|29541902|gb|AAO90840.1| DNA polymerase III alpha subunit [Coxiella burnetii RSA 493]
          Length = 1143

 Score = 1074 bits (2778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1034 (40%), Positives = 624/1034 (60%), Gaps = 33/1034 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++HS YS+++  + ++ +L +    + PA+A+TD  NLF+ ++F ++A   GI+P
Sbjct: 4    SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +   D+             V     L     G++ LI+L+SR Y+  + +  V
Sbjct: 64   IIGSELLLAEGDD-------------VFRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL +   EGLI+L+G   G + +A     S +AE+RL  +   F  R Y+ LQR 
Sbjct: 111  LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
            R   +      V++LA  H +P+VATN   FLS+ D+EAH+  + +    ++   +RPR 
Sbjct: 170  RRDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPRE 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   Y K+  EM ++FSD+PEALENTVEIA+RCS  L +    LP+F       +    
Sbjct: 230  YSDQQYFKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLDEVFLPKFPVPANLKV---- 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+  R +A  GL  RL    +      +DY +RL+ E+ VI +M F+ YFLIVADFI WA
Sbjct: 286  EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAWA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+++IPVGPGRGSGAGS+ AY+L IT++DPL   LLFERFLN +R+SMPDFDIDFC + R
Sbjct: 346  KQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEGR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV  +YG E VAQIIT+G++ A+A LRDVGR L +PY  VD++ KL+P +    +
Sbjct: 406  DRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELGVTL 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +    +    D  V  L++++ KLEGL R+A  HA G+VI    L+  VP+Y 
Sbjct: 466  E-KALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPLYS 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKVDLSLIP 602
            +  SD  VTQF+   +E  GL+KFDFLGL+TLT++  ++  +      Q   ++D+  IP
Sbjct: 525  EPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKRKIQNETELDIGTIP 584

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD +TY LL +  T  +FQLES GM++ +  +QPD   DI+ALV+L+RPGP+ + +V  
Sbjct: 585  LDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMVET 644

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K+G++ +  +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL  ADVLR AMGKK
Sbjct: 645  FIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMGKK 704

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM KQ+  F+ G    G+ + +A  IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW+K
Sbjct: 705  KPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAWLK 764

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSL 839
             HYP EF+AA ++ +MDN +K+  F  + R  N++++PP++N     F V       Y L
Sbjct: 765  AHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVYGL 824

Query: 840  AAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKGVG   A +I+    A+  F  L +FCSRVD +K+NRR +E L+ +GA+D FG SR
Sbjct: 825  GAIKGVGEAAAMNIVAYREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGVSR 884

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              L +SL    + A+   ++      ++F  E     +  T  +    N S R   E+  
Sbjct: 885  ASLFESLTKAFQAAEQRNRDMILGQHDLFGEEVKGIDEDYT--EVPEWNDSDRLRGEKET 942

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG Y SGHPL      ++ +G        +    N++ +A M++  +   TR G R+  +
Sbjct: 943  LGLYVSGHPLQACIKEMKAVGAVPINHL-SLSEKNSVVVAGMMMGMRTITTRSGKRMAIL 1001

Query: 1019 TFSEPAKEYEANFF 1032
            +  +   + +   F
Sbjct: 1002 SLEDQTGKIDVTLF 1015


>gi|168178944|ref|ZP_02613608.1| DNA polymerase III, alpha subunit [Clostridium botulinum NCTC 2916]
 gi|226950824|ref|YP_002805915.1| DNA polymerase III DnaE [Clostridium botulinum A2 str. Kyoto]
 gi|182670052|gb|EDT82028.1| DNA polymerase III, alpha subunit [Clostridium botulinum NCTC 2916]
 gi|226842287|gb|ACO84953.1| DNA polymerase III, alpha subunit [Clostridium botulinum A2 str.
            Kyoto]
          Length = 1185

 Score = 1074 bits (2777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1075 (35%), Positives = 605/1075 (56%), Gaps = 55/1075 (5%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q+ EK P +V L  H+ YSLL+ +  +++++ +       +IAITD   ++  ++F ++
Sbjct: 4    NQFDEKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKE 63

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   GI+PIIGC++ +  +    M  + +        +VLLV    GY+ L+E+VS+  +
Sbjct: 64   AIKQGIKPIIGCEIYVASKS---MYIKQQDKENETHHLVLLVKNEIGYKNLMEIVSKASV 120

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                    R+   +L++  +EGLI L+    G +       + + AE+  L +K +F + 
Sbjct: 121  EG-FYYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFKEG 178

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ LQ H   ++ + ++ +V+++   ++PLVATN+  ++ +EDY++HD+L+ +     V
Sbjct: 179  FYLELQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTV 238

Query: 241  SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +++R R   D  YLK+  EM   FS +PEALENTV+I+  C+F    H   LP+F  +E
Sbjct: 239  EEENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEE 298

Query: 300  CDDIQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYR-------------QRLDFE 344
              D        LR     GL +R    +  I K +   +               +RL++E
Sbjct: 299  GVDPY----EYLRKICFKGLFLRYEVLKDFIDKPFSIDEVLVYGNENKEAFDLIERLNYE 354

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L++I +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+F
Sbjct: 355  LSIIKQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIF 414

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNPDR+SMPD D DFC +RR EVI YV  KYG E V+QIITFG++ A+A +RDVGRA
Sbjct: 415  ERFLNPDRISMPDIDSDFCYERRGEVIDYVVEKYGKENVSQIITFGTMAARACIRDVGRA 474

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            +  PY++VDR+ K+IP      ++ +A+  +   +E    +  V  L+++++ LEGL RH
Sbjct: 475  MNYPYAEVDRIAKMIPTVLNITIN-KALELNPELKEVYDNEERVRELIDVARALEGLPRH 533

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             STHAAG+VI  +PL   VP+ +    +  VTQF M  +E+ GL+K DFLGL+TLT+++ 
Sbjct: 534  TSTHAAGVVIASQPLVNYVPLQK--NEESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRD 591

Query: 585  SLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++  + + + + +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +EDI
Sbjct: 592  AVRIIKENKEINIDLDNIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDI 651

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            IA +SLYRPGP+  I  Y   KN    I      ++P+L  T   I+YQEQVMQI + L+
Sbjct: 652  IAGISLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDLA 711

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAK 755
            GYS+  +D++RRAM KK  + M++++  FI         G   NGI + +A ++F+ +  
Sbjct: 712  GYSMGRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMMD 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSHAAAYAV+ +QTA++  +YP EF+AA +     + +K+  +   A+   I+
Sbjct: 772  FASYAFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGIE 831

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDS 874
            I+ P++N    +F V DNRI + L A+K VG     +I+ +   K  F  L DF ++VD+
Sbjct: 832  IIAPNINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVDT 891

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKG 932
              +N+R++ESL+ AGA DC    R ++L   + I    Q  ++N      N+F    +  
Sbjct: 892  SIINKRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNK 951

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-- 990
              S  I        +     + E+ + G YFSGHPL+ Y+  L+        + +     
Sbjct: 952  ESSMDIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKESL 1011

Query: 991  ------------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                         G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1012 EGNLVDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|255020984|ref|ZP_05293039.1| DNA polymerase III alpha subunit [Acidithiobacillus caldus ATCC
            51756]
 gi|254969589|gb|EET27096.1| DNA polymerase III alpha subunit [Acidithiobacillus caldus ATCC
            51756]
          Length = 1166

 Score = 1074 bits (2777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 435/1037 (41%), Positives = 615/1037 (59%), Gaps = 31/1037 (2%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +  FVHL VHS YSL +G + +  ++ +      PAIA+TD  NLF+ ++F Q A  AG
Sbjct: 2    STTGFVHLHVHSEYSLEDGIIPIKALIRRCVDWGMPAIAVTDHGNLFALVKFYQAAREAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ IIG ++ +   D  +             S+VLL     G++ L  L+SR YL     
Sbjct: 62   VKAIIGSEVWLCPPDQPE----------DPSSLVLLCRDRTGFRNLSRLLSRGYLEGLRH 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               ++   WLQ   TEGLI L+  + G + RA   +   VA +    + + F +  Y+ L
Sbjct: 112  GRPQLQHDWLQ-GHTEGLIALSAAARGDVGRALLQHQPDVARQWAERYAQWFPEAFYLEL 170

Query: 187  QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+         +  V LAY  +LP+VATNN+ FL  ED++A D    +A    +  + R
Sbjct: 171  QRNGEPGQEALLAATVDLAYALDLPVVATNNAHFLDAEDFKAFDARQCIAAGYTLDDERR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR   P+H L + +EM+  F DLPEA   TVEIA+RC+  L +    LP +   +   I 
Sbjct: 231  PRRFNPEHRLASPAEMLERFRDLPEACLQTVEIAKRCTVELTLGRYALPDYPTPDGSPI- 289

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +   +  A  GL  RL    I  G  A  YR+RL  E++VI +M F GYFLIVADFI
Sbjct: 290  ---DVYFQKAAEQGLAERLEALGID-GAAATPYRERLLREVDVIRQMGFPGYFLIVADFI 345

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            QWAK +++PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLN +R+SMPDFD+DFC 
Sbjct: 346  QWAKDHDVPVGPGRGSGAGSLVAYALRITDLDPIAYGLLFERFLNVERVSMPDFDVDFCM 405

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            ++RD VI+YV +KYG +RV QIITFG+L+A+A +RDVGR L +PY  VD+L KL+P D  
Sbjct: 406  EQRDRVIQYVADKYGRDRVGQIITFGTLKARAVVRDVGRVLNLPYGFVDQLAKLVPGDLG 465

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+ +    R  +  +  V  LL+I+ +LEG  RHASTHA G+VIG  PL+  +P
Sbjct: 466  MTL-ARALEESEELRRRQTEEDDVRELLDIALRLEGRPRHASTHAGGVVIGPEPLADRLP 524

Query: 545  MYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            ++ D       VTQ +   +EK GL+KFDFLGL+TLT+L  ++  + +          DL
Sbjct: 525  LFSDATEGSGNVTQLDKDDVEKMGLVKFDFLGLRTLTILDIAVKGINRARAAEGKAALDL 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  T+ LL +  T+ +FQLESSGMR  L  +QPD   DI+ALV+L+RPGP+ + 
Sbjct: 585  QKIPLDDPATFALLKSTHTVAVFQLESSGMRDLLRRLQPDNFGDIVALVALFRPGPLQSG 644

Query: 659  VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V  +  RK+G+  +   HP + P+L ET GV++YQEQVMQ AQ+L+GYSL  AD+LRRA
Sbjct: 645  MVDDFIARKHGRAAVSYPHPDLKPVLAETYGVMVYQEQVMQAAQILAGYSLGGADILRRA 704

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  EEM KQ+E F+ GA++ GI    A  IF+L+ KFA+YGFNKSH+AAYA++SYQT
Sbjct: 705  MGKKKPEEMAKQREIFLQGAARRGIDSHQAGAIFDLMEKFAEYGFNKSHSAAYALVSYQT 764

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K HYP  F+AA +T +MD+ +KI     + R+  + I+ PSV    ++F      I 
Sbjct: 765  AYLKAHYPSHFMAAVLTADMDHTDKIVAMIGECRRMGLAILSPSVQHSALEFLPVAEGIR 824

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            + L AIKG+G    + I+ A  AD PF    DF  RVD ++LNRR LE+L+ AGALD  G
Sbjct: 825  FGLGAIKGLGRGAVQAIIAAREADGPFRDFYDFLCRVDLQRLNRRALEALIKAGALDDLG 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR  LL SLD   + A      R ++  ++    +   S      +        R + E
Sbjct: 885  PSRECLLASLDAFLEAAAQTRAARDSQQISLLGAAEEQPS-APPWREAPAWTGIERLQRE 943

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LGFY SGHPL  ++P L  MG +      A      + +A +VV ++  ++++G RI
Sbjct: 944  RETLGFYLSGHPLLEHRPQLAAMGAQDLGGLTAGS--GLVLVAGIVVGRRSTRSKRGDRI 1001

Query: 1016 GWVTFSEPAKEYEANFF 1032
             ++T  +     +   F
Sbjct: 1002 YFLTLEDEVGRCDVVVF 1018


>gi|330968945|gb|EGH69011.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aceris
            str. M302273PT]
          Length = 1173

 Score = 1074 bits (2777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1060 (39%), Positives = 606/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173  NRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA               Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVD 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +         +D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPG + +
Sbjct: 588  IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGLLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+KTHYP  F+AA ++ +M N  K+    ++ R   +++  P VNT    F V
Sbjct: 768  LVSYQTAWLKTHYPAPFMAAVLSADMHNTNKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              D RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  SDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KG 932
            ALD  G                +R  LL +L+   + A+   ++R + H ++F     + 
Sbjct: 888  ALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFVEA 947

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  DADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 Q--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|302383614|ref|YP_003819437.1| DNA polymerase III subunit alpha [Brevundimonas subvibrioides ATCC
            15264]
 gi|302194242|gb|ADL01814.1| DNA polymerase III, alpha subunit [Brevundimonas subvibrioides ATCC
            15264]
          Length = 1162

 Score = 1074 bits (2777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 501/1045 (47%), Positives = 684/1045 (65%), Gaps = 28/1045 (2%)

Query: 2    TQYLEKSPS---FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
             Q +  +P+   FVHL+V S+YSLLEGA+    +    A    PA+ + D  NLF ALEF
Sbjct: 10   VQAISDTPAQTGFVHLRVRSAYSLLEGAIKAGKVGKLAADAGMPAVGVADRVNLFGALEF 69

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            S+ A + G+QP+I C L +      +     K     VP++VL+     G++ L  L S 
Sbjct: 70   SEAAKSVGVQPLIACALPVTGIGGKRTERWAK-----VPTVVLICQDEPGWRNLCALSSS 124

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             YL D G +   +    +    + GLI+L+GG  GP+D  F  N      + L      F
Sbjct: 125  AYL-DAGDEEPNVTWDQVV-AHSAGLILLSGGPDGPVDPLFVQNKPAEGARALAAMAGAF 182

Query: 179  GDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            GDR YV LQRH   D    E  +V+ AY H++PLVATN+  +  +    +HD L+ +A  
Sbjct: 183  GDRFYVELQRHGRPDEAAAERGLVEWAYGHDVPLVATNDVHYARQNQARSHDALLCIADG 242

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                Q+DR R+T  H+ +  +EM ++F+DLPEA ++T+EIARRC+F+++ H PILPRF  
Sbjct: 243  AFTGQEDRRRITDQHFFRTAAEMRTLFADLPEACDSTIEIARRCAFLVKTHPPILPRFDT 302

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             +     + E +EL ++A  GL+ RL    +       DY  RL++E+ +I +M F GYF
Sbjct: 303  GDG----RTEPDELMHQAREGLKARLK--LVTPSAPEADYWTRLEWEVGIITQMGFPGYF 356

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV+DFI+WAK + IPVGPGRGSGAGS+ A+ALTITD+DPLRF LLFERFLNP+R+SMPD
Sbjct: 357  LIVSDFIKWAKSHGIPVGPGRGSGAGSLVAWALTITDLDPLRFGLLFERFLNPERVSMPD 416

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ+RR+EVI YVQ +YG +RVAQIITFG+LQA+A LRDVGR LQMP  QVDRL K
Sbjct: 417  FDIDFCQERREEVITYVQERYGKDRVAQIITFGTLQARAVLRDVGRVLQMPLGQVDRLAK 476

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IPN+PA+P +L QAI  + R REAR AD +V  LLE + +LEGLYR+ASTHAAGIVIGD
Sbjct: 477  MIPNNPANPTTLAQAIEIEPRLREARDADRAVATLLETALELEGLYRNASTHAAGIVIGD 536

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL +L P+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT+L ++  +L++RG   
Sbjct: 537  RPLVELTPLYQDPRSDIPATQFNMKWVEPAGLVKFDFLGLKTLTVLDRAHGYLSRRGAAQ 596

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D +L+P DD +TY L+ +  T+G+FQLES GMR  L  M+   IE+I AL+SLYRPGP++
Sbjct: 597  DFNLLPLDDGKTYELMASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPME 656

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I  Y +RK G+ ++  +HP +  +L ET GVIIYQEQVM+IAQ+L+GYSL EAD+LRRA
Sbjct: 657  MIDTYIDRKFGRAEVDYLHPSLTEVLTETYGVIIYQEQVMKIAQILAGYSLGEADLLRRA 716

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK KEEMD QK RFI GAS+  + +  + +IFEL+AKFA YGFNKSHAAAYA+ISYQT
Sbjct: 717  MGKKKKEEMDFQKARFIKGASEKSVPEQQSDSIFELVAKFAGYGFNKSHAAAYALISYQT 776

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GD 832
             W+K ++PVEF AASM+L++ N +K+  F QDAR+F + +  P VNT   DF V    G 
Sbjct: 777  GWLKANHPVEFFAASMSLDLSNTDKLAVFYQDARKFGVPVRAPDVNTSSADFDVTWEEGT 836

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              + Y+L AI+ VG    +H++E       F  + DF  RVD + +N+R LE L  AGA 
Sbjct: 837  GAVLYALGAIRNVGLEAMKHVVEVRETGGRFADIFDFLERVDPRAVNKRALEGLAKAGAF 896

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QL +  D +  Y Q V  +RT+   ++F  ++   S +  L+         R
Sbjct: 897  DSIHPNRRQLFEQADTLMAYCQSVAADRTSSQVSLFGADQAGAS-RPRLKSVEPWVGPER 955

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKT 1009
             + E   +GFY SGHPL+  +  LR+  +    E+     +G++   +A +V  +Q++ +
Sbjct: 956  LDQELSAVGFYLSGHPLEDMEGALRRKRVTFVAEAVQRAEQGHDAFMMAGVVRRRQERAS 1015

Query: 1010 -RKGSRIGWVTFSEPAKEYEANFFP 1033
             + G +  +VTFS+P  E+E   FP
Sbjct: 1016 AKNGEKFAFVTFSDPTGEFEC-LFP 1039


>gi|256827913|ref|YP_003156641.1| DNA polymerase III, alpha subunit [Desulfomicrobium baculatum DSM
            4028]
 gi|256577089|gb|ACU88225.1| DNA polymerase III, alpha subunit [Desulfomicrobium baculatum DSM
            4028]
          Length = 1151

 Score = 1073 bits (2776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1042 (40%), Positives = 610/1042 (58%), Gaps = 39/1042 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL  HS YSLL+GA+ L ++  +       + AITD  NLF ++ F  +A   GI+P
Sbjct: 3    GFTHLHCHSEYSLLDGAIRLKDLCARAVDFGFSSAAITDHGNLFGSVPFYLEAKKHGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ I   D  +  N+ +        +VLL     GY  L+++VS  +L        
Sbjct: 63   IIGSEVYIA-DDMFERENKKR------FHLVLLAQNLIGYHNLVKIVSAGFLEG-FYYKP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+   +L+   +EGLI L+    G +  A    +   A  +   + ++F DR Y+ LQ +
Sbjct: 115  RVDKKYLR-AHSEGLICLSACLQGEVPYALRHGTFDSALLKAREYMEIFPDRFYLELQSN 173

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     ++++LA    LPLVATN+  +L ++DYEAHD+L+ V    + S+K R + 
Sbjct: 174  GLKEQEVVNDRLMELANETGLPLVATNDCHYLGKDDYEAHDILLCVGTGKIASEKQRLKF 233

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + Y K   EM + F+  PEA+EN   IA  C   L++     P +   E   +    
Sbjct: 234  DTNEFYYKAPEEMEAAFAHCPEAVENAGRIADMCEVELKLKQHFFPVYDVPEGVTL---- 289

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + E R  +  GL+ R+A  A+        YR+RL+ EL VI    F  YFLIV DFI WA
Sbjct: 290  DQEFRRLSEEGLKERIA--ALPYEVDESVYRERLELELGVIIEKGFPAYFLIVQDFINWA 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K  NIPVGPGRGS AGS+ +YAL ITD+DP+R++L FERFLN +R SMPD D+DFC +RR
Sbjct: 348  KSKNIPVGPGRGSAAGSLVSYALRITDLDPIRYALFFERFLNVERASMPDIDVDFCYNRR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI+YV  KYG + VAQI+ FG+++AK A+RDV RAL +     DR+ KLIP+D    +
Sbjct: 408  DEVIKYVSEKYGADHVAQIVAFGTMKAKGAIRDVARALDVSLKDADRIAKLIPDDLKMTL 467

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            + +A+ ++   R    +DP   +L +++++LEGL RH+S HAAGIVI  +P+ + +P+++
Sbjct: 468  T-KALDEEPELRNLIDSDPQYKKLYDVARRLEGLARHSSIHAAGIVISQKPMVEYLPLHK 526

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                ++ VTQ +MK +E  GLIKFDFLGLKTLT++  +L  + +       L  +P DD 
Sbjct: 527  GKNGEV-VTQLDMKKVELIGLIKFDFLGLKTLTVIDDALKLIRKNNKPVPILEKLPLDDP 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
            +T+ LL    T G+FQLES GMR+ L G++P C EDIIAL++LYRPGP+++ +V  +  R
Sbjct: 586  QTFELLCRGETDGVFQLESDGMRRVLRGLKPSCFEDIIALLALYRPGPLESGMVDDFIGR 645

Query: 665  KNGKEKIVSIHPLI----DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            K+G  K+      +     P+L++T GVI+YQEQVM+IA  L+ YSL E D LRRAMGKK
Sbjct: 646  KHGLRKVEYEFEELAPVVHPILEDTYGVILYQEQVMKIASDLAKYSLGEGDNLRRAMGKK 705

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               EM KQ+ RF+ GA +N IS+  A  IF+L+ KFA YGFNKSH+AAYAVISYQTA++K
Sbjct: 706  DPAEMAKQRVRFLDGARENNISQEAAEYIFDLMEKFAGYGFNKSHSAAYAVISYQTAYVK 765

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYP EF+AA +T E+ N +KI       R  +I+++PP VN    +F V    I Y L+
Sbjct: 766  AHYPAEFMAAIITSEVSNTDKILAHVSACRDMDIEVLPPDVNRSFNEFTVEGESIRYGLS 825

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IKGVG      I E       F SL DFC RV+ +K+N+RVL+SL+ +GA+D FG SR 
Sbjct: 826  GIKGVGEGAVESIEEEREKGGDFTSLLDFCQRVNLRKVNKRVLDSLIKSGAMDSFGCSRR 885

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---------GTFSDKITLEKFSVENSSV 950
             LL++LD +Q  AQ   K +T+   +     +         G   D+  L +F       
Sbjct: 886  ALLENLDKVQAMAQKRAKRKTSGQLSFMGMVEENTCNLTGLGIEDDEAALPEF---GDDE 942

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            +   E+   GF+  GHPL  ++  +R++G     +       + +++  +V S +   T+
Sbjct: 943  KCRMEKEAFGFFLIGHPLQPFRQEIRRLGYPSLAQCADLTEKSPVQVPVLVTSMKTINTK 1002

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            KG R+ +    + +   EA  F
Sbjct: 1003 KGDRMAFCGIEDLSGSGEAIVF 1024


>gi|302187913|ref|ZP_07264586.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. syringae
            642]
          Length = 1173

 Score = 1073 bits (2776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1060 (39%), Positives = 606/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173  NRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA               Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVD 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +         +D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F V
Sbjct: 768  LVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              D RI Y L AIKGVG      I +A    PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  SDDGRILYGLGAIKGVGEGPVEAITDARQSGPFKDLFDFCARVDLKRVNKRTLDGLIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KG 932
            ALD  G                +R  LL +L+   + A+   ++  + H ++F     + 
Sbjct: 888  ALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFVEA 947

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  DADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 Q--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|307246021|ref|ZP_07528103.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 1 str. 4074]
 gi|307255002|ref|ZP_07536820.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 9 str. CVJ13261]
 gi|307259438|ref|ZP_07541163.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 11 str. 56153]
 gi|306852956|gb|EFM85179.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 1 str. 4074]
 gi|306861875|gb|EFM93851.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 9 str. CVJ13261]
 gi|306866374|gb|EFM98237.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 11 str. 56153]
          Length = 1158

 Score = 1073 bits (2776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1052 (39%), Positives = 613/1052 (58%), Gaps = 43/1052 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +TQ       FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  
Sbjct: 1    MTQQ-----RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYG 55

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            +A  +G++PIIG  + +  + + +              + LL     GY  +  L+S+ Y
Sbjct: 56   EALGSGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAY 105

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 +    +  +WL E+  EG+I+L+GG +G + +A    +   A++ +  +++ F +
Sbjct: 106  QQGYVEF-PLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENEAEADELVGFYQQYFPN 163

Query: 181  RLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  
Sbjct: 164  HYYLALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYT 223

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +    RP+  +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++    LP F   
Sbjct: 224  LDDPKRPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTG 283

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +        E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F G
Sbjct: 284  DL-----STEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPG 338

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SM
Sbjct: 339  YFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSM 398

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFD+DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+
Sbjct: 399  PDFDVDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRI 458

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KLIP DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI 
Sbjct: 459  SKLIPPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIA 517

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--- 592
               ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR   
Sbjct: 518  PTAITDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAR 577

Query: 593  --GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+
Sbjct: 578  EGKEPVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALF 637

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            RPGP+++ +   + +RK+G E++        H  + P+L  T GVI+YQEQVMQIAQ+L+
Sbjct: 638  RPGPLESGMVQNFIDRKHGHEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLA 697

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GY+L  AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNK
Sbjct: 698  GYTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNK 757

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+
Sbjct: 758  SHSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNS 817

Query: 824  PCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881
                F V +     Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR 
Sbjct: 818  GKHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRT 877

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITL 940
             E L+ +GA D  G  R  L+++L++  K +    K       ++F     T  + +   
Sbjct: 878  FEGLIMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAY 937

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                  +     E E+  LG Y SGHP+  +   L         E   T RG  + +A +
Sbjct: 938  ANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGI 997

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++  +   T++GSR+G  T  + + + +   F
Sbjct: 998  IMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|320540046|ref|ZP_08039702.1| putative DNA polymerase III alpha subunit [Serratia symbiotica str.
            Tucson]
 gi|320029895|gb|EFW11918.1| putative DNA polymerase III alpha subunit [Serratia symbiotica str.
            Tucson]
          Length = 1162

 Score = 1073 bits (2776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1047 (39%), Positives = 608/1047 (58%), Gaps = 40/1047 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A   GI+
Sbjct: 4    PRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGVGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG  L +          Q       +  + +L + + GYQ L  L+SR Y    G   
Sbjct: 64   PIIGADLHV----------QSDVLGDELAQLTVLATNSAGYQNLTLLISRAYQRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL E   EGL++L+G   G + +     +    E+ L  +++ F D  Y+ L R
Sbjct: 114  PIIDRDWLIE-HREGLLLLSGARHGDVGKFLLRGNQPQVEQCLDFYQQYFPDCYYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        V LA    LP+VATN+  FL E+D++AH++ +A+     +    RP 
Sbjct: 173  TGRPDEENYLHAAVTLATERGLPVVATNDVRFLEEDDFDAHEIRVAIHEGFTLDDPKRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y+++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 233  NYSPQQYMRSEDDMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPTGDM-----T 287

Query: 307  EENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLVLKSKEGLEERLTFLFPDPEVRAQRRPEYDERLDVELKVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNHVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408  MEKRDLVIDHVSEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TL+++  +L+ +  R        +D+
Sbjct: 527  PLYCDAEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLSIIDWALEMINARCAKSGEPPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  AAIPLNDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   GI   ++V IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKNPVEMAKQRGGFEDGAKLRGIDGELSVKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 767  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYRFHVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            +     Y + AIKGVG      I+EA        F  L D C+R D KKLNRR+LE L+ 
Sbjct: 827  NEGEIVYGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIM 886

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GALD  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 887  SGALDRLGPHRAALMNSLGDALKAADQHAKAEAIGQVDMFGVLSEAPEQVEQSYANVPRW 946

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP+  Y   + +  G +  ++   T RG       +VV+ +
Sbjct: 947  QEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVVAAR 1006

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1007 VMVTKRGNRIGICTLDDRSGRLEVMLF 1033


>gi|189218920|ref|YP_001939561.1| DNA polymerase III, alpha subunit [Methylacidiphilum infernorum V4]
 gi|189185778|gb|ACD82963.1| DNA polymerase III, alpha subunit [Methylacidiphilum infernorum V4]
          Length = 1159

 Score = 1073 bits (2776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1031 (38%), Positives = 586/1031 (56%), Gaps = 26/1031 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +HS YSLL+ +  + +++ K      PA+A+TD  NL+  ++F +   +  I+P
Sbjct: 4    NFVHLHLHSEYSLLDASARIKDVVSKAKQLGMPAVALTDHGNLYGTIDFYKACVSQNIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  I            K     +  + LL    +GY+ L++L+S+ +L        
Sbjct: 64   IIGCEAYITSGSRFDR----KGSRSHIYHMTLLAKNNQGYKNLLKLISKAHLEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
            RI L  L+E    GLI  +G  +G I +       + A+K      +LF     Y+ +Q 
Sbjct: 119  RIDLELLKE-HKAGLIGTSGCMNGEIPQKILEGDLKGAKKLAEELSRLFDPNCFYLEIQN 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +       +   A +  LPLVATN+  ++ +ED + HDVL+ +  ++ +    R +
Sbjct: 178  HGLKEEKEIREVLADFAQSLGLPLVATNDVHYVEQEDAQFHDVLLCIGTASQIHDPKRKK 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               P+ Y K   +M  +F++ P+A+ENT  IAR C   +++     P +         K 
Sbjct: 238  YPCPEFYFKTPQQMAELFNEFPQAVENTANIARLCDVTIELGKNHFPSYTLPS---PYKT 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     GL+ R           ++  ++RL++EL+VI +  FS YFLIV DFI +
Sbjct: 295  HGEYLRTLCYEGLQKRY-------DNISEQIKERLEYELSVIEQTGFSSYFLIVWDFIHY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AKK  IPVGPGRGS AGS+TAY L ITDIDP+++ L+FERFLNP R+S PD DIDFC +R
Sbjct: 348  AKKEGIPVGPGRGSAAGSLTAYVLGITDIDPIKYGLVFERFLNPQRVSPPDIDIDFCYNR 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R +VI YV+ KYG   VAQIITFG+L AK A+RDV R L M Y + DR+ K+IP DP   
Sbjct: 408  RSQVIDYVRKKYGERSVAQIITFGTLGAKMAVRDVARVLGMSYQEADRIAKMIPPDPQLT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A   + +  +    DP    +L I+ KLEGL R A  HAAG+VI +  L   +P+ 
Sbjct: 468  LE-RARELNPQLDQLWENDPQSREVLTIATKLEGLTRQAGVHAAGVVISEGDLLDFIPLS 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            R   ++  VTQ++M+ I + GL+K DFLGLKTLT++ + L  + ++  + +D    P DD
Sbjct: 527  RGEHNE-IVTQWSMEPIAEIGLLKMDFLGLKTLTVISECLALIKEKENILLDPKQFPLDD 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              TY LL    T+G+FQLESSGM + ++ ++P  IEDIIALV+LYRPGP++NI  Y +RK
Sbjct: 586  KNTYELLGRGQTIGVFQLESSGMVELVKKLKPGNIEDIIALVALYRPGPMENIPAYADRK 645

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             GK  I   HPL++P+LK+T GV+IYQEQVMQ A +L+GYSL E+D+LRRAMGKK  EEM
Sbjct: 646  LGKVPITYDHPLLEPILKDTYGVMIYQEQVMQAANVLAGYSLGESDLLRRAMGKKKPEEM 705

Query: 726  DKQKERFISGAS-KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
             KQ+++FI G   KN I +  A+ IFE L KFA YGFNK+H+A Y  ++Y TA++K +YP
Sbjct: 706  RKQRDQFIKGCKEKNNIPEEKAIQIFETLEKFAGYGFNKAHSACYGYLAYVTAYLKANYP 765

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            V +L   ++ E  + EKI+    + R+  I ++PP ++   V F V    I + L+AIK 
Sbjct: 766  VFYLCTLLSYESGDTEKIELLVSECRRMGIGVLPPDISKSEVRFSVEGGSIRWGLSAIKN 825

Query: 845  VGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG   A  I+E+      + SL D C R+  + LN+++LESL+ +GA D  G SR +LL+
Sbjct: 826  VGEAAAEAIVESRKKRGSYHSLFDLCLRISGRTLNKKILESLIKSGACDSLGRSRKELLE 885

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEK-GTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            SL           K R +  +N+F        +D+ +  K      ++R   E+ +LG Y
Sbjct: 886  SLPAALSAGSITSKERLSGQQNLFEEHNFIDPTDRQSSAKGEDYPLNIRLHWEKELLGTY 945

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW-VTFS 1021
             S HPLD +   +R    +           + + +  M+   ++K ++K  +  + +   
Sbjct: 946  LSSHPLDEWMSWIRLFQNEPISSLKELADNSRLYVPGMITHIEKKTSQKSKKPYFKLILE 1005

Query: 1022 EPAKEYEANFF 1032
            +     E   F
Sbjct: 1006 DQTGHIEVILF 1016


>gi|254512245|ref|ZP_05124312.1| putative DNA polymerase III alpha subunit subfamily [Rhodobacteraceae
            bacterium KLH11]
 gi|221535956|gb|EEE38944.1| putative DNA polymerase III alpha subunit subfamily [Rhodobacteraceae
            bacterium KLH11]
          Length = 1166

 Score = 1073 bits (2776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 499/1057 (47%), Positives = 689/1057 (65%), Gaps = 47/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VH+ YSLLEGA+ L  +       + PA+A+TDTN++FSALEFS  A  
Sbjct: 1    MSSIPRFIHLRVHTEYSLLEGAVRLKKLPGLCEQMEMPAVAVTDTNSMFSALEFSVAASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+           G+ P    P +VLL  +  GY+ L++L S +Y+ D+
Sbjct: 61   AGVQPIMGCQVDLTY----VQAQPGEKPKAPAP-LVLLAQSELGYENLMKLSSCLYV-DK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q  ++ L  L +  ++GLI LTGG  GP+           AE  +     +F DRLY+
Sbjct: 115  GGQLPQVTLEELAD-RSDGLICLTGGPDGPVGHLLQQGQRPAAEALVDRLAGMFPDRLYM 173

Query: 185  NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G D      R  E   V++AY  +LPLVATN+  F + + YEAHD L+ +A   
Sbjct: 174  ELQRHPGEDGQPEAERLTERGHVEMAYAKDLPLVATNDVYFPTSDMYEAHDALICIAEGA 233

Query: 239  VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K++ EMV++F+DLPEA+ENTVEIA+RC+F+     PILP+F +
Sbjct: 234  YVDQQEGRRRLTAQHYFKSQQEMVTLFADLPEAIENTVEIAKRCAFMAYRRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E          ELR  A  GL+ RLA   I      ++Y++RLDFEL +I  M F GYF
Sbjct: 294  DEV--------AELRRIANEGLQKRLA--VIPHAVTPEEYQERLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK  +IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIQWAKDEDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIRYVQQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+ +A+ D+ R R+   ++  V+RLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALKDEPRLRDEARSEEVVERLLTYGQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----- 591
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + +     
Sbjct: 524  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFKSGRDL 583

Query: 592  -------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                          G    ++ IP DD  TY L +   T+ +FQ+ESSGM  AL+ M+PD
Sbjct: 584  HIAPDGTELYEPADGAVNQINAIPLDDEATYKLYSAAKTVAVFQVESSGMMDALKRMKPD 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDIIALV+LYRPGP++NI  +   KN   +  ++HP ID +L ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIIALVALYRPGPMENIPKFCEVKNKLSQRDTLHPSIDHILDETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ ++GYSL  AD+LRRAMGKKI+E MD ++ +F+ GA++N + +  A  ++ LL KFA+
Sbjct: 704  AQEMAGYSLGGADLLRRAMGKKIQEAMDAERPKFLKGAAENDVDEAKATEVWNLLDKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   +K+  + ++ R+  ++  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLDLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            PP VN     F V D  + Y+L A+K VG      ++E  A KPF +L DF  RVD KK+
Sbjct: 824  PPCVNRSQSTFDVVDGELVYALGALKNVGVEAMNLVVEGRAGKPFVNLFDFARRVDLKKV 883

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE L  AGA D    +R ++ +SLD + +Y+  + + + +   ++F  E G    +
Sbjct: 884  GKRPLEMLARAGAFDQLDKNRRRVFESLDPLVQYSAAIHEQKNSNQVSLFG-EAGDDLPE 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--I 995
              L   S    + R   E + +GFY SGHPLD Y P L++  +   +E +   R      
Sbjct: 943  PRLSPSSDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKQVLTLDEVMEKARSGPLIA 1002

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++A +V  +Q++K+ +G+R  +   S+P   +E   F
Sbjct: 1003 KMAGVVAGRQERKSARGNRFAFAQLSDPTGAFEVTLF 1039


>gi|284008505|emb|CBA75016.1| DNA polymerase III subunit alpha [Arsenophonus nasoniae]
          Length = 1160

 Score = 1073 bits (2775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1045 (40%), Positives = 618/1045 (59%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS YS+++G   +N +++++A    PA+AITD  NL+  ++F   A A GI+
Sbjct: 4    PRFIHLRVHSDYSIIDGLAKINPLVNRVAELGMPALAITDFTNLYGLIKFYGAAHAEGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          + +     V  + +L    +GY  L  L+S  Y    G   
Sbjct: 64   PIIGADFYL----------ESELLGDEVAHLTILARDNKGYHNLTLLISAAYQKGYGAIG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL     EGL++L+GG  G + +     + Q+ E+ L  ++  F +  Y+ L R
Sbjct: 114  PTIKREWLV-THKEGLLLLSGGCLGDVGKFLLRGNQQLVEQCLDFYQTHFPNNYYLELVR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                D        VQLA    +P+VATNN  F++ +D+ AH++ +A+     ++ + RP 
Sbjct: 173  TGRPDEESYLHAAVQLAAEKGVPVVATNNVRFINSDDFAAHEIRVAIHDGFTLADQKRPK 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL++  EMV +F+D+PEALEN+VEIA+RC+ ++++    LP+F   +       
Sbjct: 233  NYSPQQYLRSEQEMVELFADIPEALENSVEIAKRCNVMMRLGEYFLPQFPTGDM-----A 287

Query: 307  EENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L   A AGLE RL         +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288  TEDFLIKCAKAGLEERLQFLYPNEKERAERRIEYDERLDTELRVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P+DP
Sbjct: 408  MEKRDQVIEHVAQMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLVPSDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + + +E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTLE-KAFVVEPQLQEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            P+Y D     P+TQF+   +E AGL+KFDFLGL+TLT++  +LD + QR  K      D+
Sbjct: 527  PLYCDPEGQNPLTQFDKNDVEYAGLVKFDFLGLRTLTIISWALDMINQRRAKQNLAPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP  D + + LL    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587  ATIPLTDQKCFDLLQRAETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDVEWQHASLQTVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM +Q+  F +GA KNGI   + + IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAQQRSIFEAGAVKNGIDGELGMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V 
Sbjct: 767  VSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVSLVDECWRMGLKVLPPDINSGLYHFHVN 826

Query: 832  -DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                I Y + AIKGVG      I+E+      F  + D C+RVD+KKLNRRV+E L+ +G
Sbjct: 827  DRGEIVYGIGAIKGVGEGPIEAIIESRQKGGYFKEIFDLCARVDTKKLNRRVMEKLIMSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL++  K A    K       ++F    +     + +    +    
Sbjct: 887  AFDHLGPHRAALMSSLEDALKAADQHAKAEAIGQTDMFGVLAEAPEQVEQSYASVAKWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQK 1007
             +  E E+  LG Y +GHP+  Y   + +       ++   T RG    +  + ++ +  
Sbjct: 947  HLILEGERETLGLYLTGHPITAYLSEIERYTSGLRLKDVNPTPRGQMSTVVGLALTAKVV 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   +   F
Sbjct: 1007 TTKRGNRIGICTLDDRSGRLDIMLF 1031


>gi|220909694|ref|YP_002485005.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 7425]
 gi|219866305|gb|ACL46644.1| DNA polymerase III, alpha subunit [Cyanothece sp. PCC 7425]
          Length = 1162

 Score = 1073 bits (2775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1050 (36%), Positives = 585/1050 (55%), Gaps = 40/1050 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  L  ++ +      PAIA+TD   ++ A+E  +      ++P
Sbjct: 2    SFVGLHIHSDYSLLDGASQLPELIGRAQELGMPAIALTDHGVMYGAVELLKTCRGKSVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
            IIG ++ +   D  K   + +         V+L     GY+ L++L S   L   QGK  
Sbjct: 62   IIGNEMYVINGDITKQERRPR------YHQVVLAKNNTGYKNLVKLTSISNLKGVQGKGI 115

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L +   EGLI+ +    G I +A      ++A +    +K LF D  Y+ 
Sbjct: 116  FSRPCINKELLTQYH-EGLIVTSACLGGEIPQAIMQGKPEIARRVAQWYKDLFKDDFYLE 174

Query: 186  LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V+++    + ++ATN+S F+S  D EAHD L+ +    ++++  
Sbjct: 175  IQDHGSQEDRVVNVELVRISQELGIKIIATNDSHFISCYDVEAHDALLCIQTGKLITEDK 234

Query: 245  RPRVTPDHYLKNRSEMVSIFSD-LPE-----ALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R +   YLK+  EM  +F D LPE     A+ NT+E+A +         P  P F   
Sbjct: 235  RLRYSGTEYLKSAEEMALLFRDHLPEEVIKQAITNTLEVAEKIEPYDIFREPQSPHFPVP 294

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                     E  L + A  GL  R  + +  +     DYR+RL++EL ++ +M FS YFL
Sbjct: 295  AG----HTAETYLEDVAWQGLLKRCNKNS--RSEIEPDYRERLEYELKMLQKMGFSTYFL 348

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A+ + IPVGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 349  VVWDYIKYARDHGIPVGPGRGSAAGSLVAYAMGITNIDPVHHGLLFERFLNPERKSMPDI 408

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC DRRDEVI+YV  KYG +RVAQIITF  + +KA L+DV R L +PY + DR+ K+
Sbjct: 409  DTDFCIDRRDEVIKYVTEKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADRMAKM 468

Query: 479  IPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L+ +  D      F+E    DP+V   ++++ ++EG  +    HAAG+VI
Sbjct: 469  IPVSRGKPAKLKVMISDATPAPEFKEKYDKDPNVRHWIDMAIRIEGTNKTYGVHAAGVVI 528

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               PL ++VP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT+++K+LD + Q   
Sbjct: 529  ASEPLDEIVPLQRN-NDGAVITQYFMEDLESLGLLKMDFLGLKNLTMIEKTLDLIKQHKK 587

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              +DL  +P DD E+Y LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRPG
Sbjct: 588  TDLDLDRLPLDDAESYKLLARGELEGIFQLESSGMRQVVRDLKPSNLEDISSILALYRPG 647

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRK+G+E I   H ++ P+L ET G+++YQEQ+M+IAQ ++GYSL +AD
Sbjct: 648  PLDAGLIPKFINRKHGRENIDYPHEILKPILNETYGIMVYQEQIMKIAQDMAGYSLGQAD 707

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM K +E F+ GA+KNG+    A  +F+ +  FA+Y FNKSH+ AY  
Sbjct: 708  LLRRAMGKKKVSEMQKHQEIFVEGAAKNGVKSKTAQELFDQMVLFAEYCFNKSHSTAYGY 767

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K +YPVE++AA +T    + +K++K+        I + PP +N   VDF   
Sbjct: 768  VTYQTAYLKANYPVEYMAALLTANSGDQDKVQKYIGSCLSMGISVEPPDINRSGVDFTPL 827

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            +  I + L+A++ VG      I+ A     PF SL D C R+D + +NRR LE+L+  GA
Sbjct: 828  EKSILFGLSAVRHVGEGAIADILAARESAGPFQSLADLCDRIDPRTVNRRALEALINCGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-------EKGTFSDKITLEKF 943
            +DC   +R QL+  L+ + +++Q   K+R     N+F            +F         
Sbjct: 888  MDCLELNRNQLIHDLELVLEWSQSRAKDRAIGQGNLFDMLGGSSTQSTSSFEAAPKAPPV 947

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                 + +   E+ +LGFY S HPL   +   R +                +    M+  
Sbjct: 948  PDLEQTEKLRLEKELLGFYISNHPLKEVQKTARILAPISLANLEDQPDNVTLSAIVMLTE 1007

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++  T+KG  +      +   + EA  FP
Sbjct: 1008 LKKVVTKKGDNMAIAQLEDLTGKAEAVVFP 1037


>gi|322807697|emb|CBZ05272.1| DNA polymerase III alpha subunit [Clostridium botulinum H04402 065]
          Length = 1185

 Score = 1073 bits (2775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1075 (35%), Positives = 605/1075 (56%), Gaps = 55/1075 (5%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q+ EK P +V L  H+ YSLL+ +  +++++ +       +IAITD   ++  ++F ++
Sbjct: 4    NQFDEKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKE 63

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   GI+PIIGC++ +  +    M  + +        +VLLV    GY+ L+E+VS+  +
Sbjct: 64   AIKQGIKPIIGCEIYVASKS---MYIKQQDKENETHHLVLLVKNEIGYKNLMEIVSKASV 120

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                    R+   +L++  +EGLI L+    G +       + + AE+  L +K +F + 
Sbjct: 121  EG-FYYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFKEG 178

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ LQ H   ++ + ++ +V+++   ++PLVATN+  ++ +EDY++HD+L+ +     V
Sbjct: 179  FYLELQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTV 238

Query: 241  SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +++R R   D  YLK+  EM   FS +PEALENTV+I+  C+F    H   LP+F  +E
Sbjct: 239  EEENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEE 298

Query: 300  CDDIQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYR-------------QRLDFE 344
              D        LR     GL +R    +  I K +   +               +RL++E
Sbjct: 299  GVDPY----EYLRKICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNYE 354

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L++I +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+F
Sbjct: 355  LSIIKQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIF 414

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNPDR+SMPD D DFC +RR EVI YV  KYG E V+QIITFG++ A+A +RDVGRA
Sbjct: 415  ERFLNPDRISMPDIDSDFCYERRGEVIDYVVEKYGKENVSQIITFGTMAARACIRDVGRA 474

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            +  PY++VDR+ K+IP      ++ +A+  +   +E    +  V  L+++++ LEGL RH
Sbjct: 475  MNYPYAEVDRIAKMIPTVLNITIN-KALELNPELKEVYDNEERVRELIDVARALEGLPRH 533

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             STHAAG+VI  +PL   VP+ +    +  VTQF M  +E+ GL+K DFLGL+TLT+++ 
Sbjct: 534  TSTHAAGVVIASQPLVNYVPLQK--NEESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRD 591

Query: 585  SLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++  + + + + +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +EDI
Sbjct: 592  AVRIIKENKEINIDLDNIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDI 651

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            IA +SLYRPGP+  I  Y   KN    I      ++P+L  T   I+YQEQVMQI + L+
Sbjct: 652  IAGISLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDLA 711

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAK 755
            GYS+  +D++RRAM KK  + M++++  FI         G   NGI + +A ++F+ +  
Sbjct: 712  GYSMGRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMMD 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSHAAAYAV+ +QTA++  +YP EF+AA +     + +K+  +   A+   I+
Sbjct: 772  FASYAFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGIE 831

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDS 874
            I+ P++N    +F V DNRI + L A+K VG     +I+ +   K  F  L DF ++VD+
Sbjct: 832  IIAPNINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVDT 891

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKG 932
              +N+R++ESL+ AGA DC    R ++L   + I    Q  ++N      N+F    +  
Sbjct: 892  SIINKRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNK 951

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-- 990
              S  I        +     + E+ + G YFSGHPL+ Y+  L+        + +     
Sbjct: 952  ESSMDIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKESL 1011

Query: 991  ------------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                         G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1012 EGNLVDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|187776689|ref|ZP_02993162.1| hypothetical protein CLOSPO_00204 [Clostridium sporogenes ATCC 15579]
 gi|187775348|gb|EDU39150.1| hypothetical protein CLOSPO_00204 [Clostridium sporogenes ATCC 15579]
          Length = 1185

 Score = 1073 bits (2774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1071 (35%), Positives = 604/1071 (56%), Gaps = 55/1071 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            EK P +V L  H+ YSLL+ +  +++++ +       +IAITD   ++  ++F ++A   
Sbjct: 8    EKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKEAIKQ 67

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIGC++ +  +    M  + +        +VLLV    GY+ L+E+VS+  +    
Sbjct: 68   GIKPIIGCEIYVAAKS---MYIKQQDKENETHHLVLLVKNEIGYKNLMEIVSKASVEG-F 123

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R+   +L+E  +EGLI L+    G +       + + ++K  L +K +F +  Y+ 
Sbjct: 124  YYKPRVDHEFLKE-HSEGLIALSACLGGEVQSNILKGNLEKSKKAALIYKDIFKEGFYLE 182

Query: 186  LQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H   ++ + ++ +VQ++   ++PLVATN+  ++ +EDY++HD+L+ +     V +++
Sbjct: 183  LQYHGMEEQLKVNETLVQMSKELDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTVEEEN 242

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R   D  YLK+  EM   FS +PEALENTV+I+ +C+F    H   LP+F  +E  D 
Sbjct: 243  RMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEQCNFDYNFHESKLPKFPLEEGIDP 302

Query: 304  QKEEENELRNKAVAGLEVRL------------AQGAIAKGYHAQD---YRQRLDFELNVI 348
                   LR     GL  R                 +A G   ++     +RL++EL++I
Sbjct: 303  Y----EYLREICFKGLFSRYEILKDFMNKPFSMDEILAYGAENKEAFDLIERLNYELSII 358

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+FERFL
Sbjct: 359  KQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFL 418

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NPDR+SMPD D DFC +RR EVI YV  KYG   V+QIITFG++ A+A +RDVGRA+  P
Sbjct: 419  NPDRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDVGRAMNYP 478

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            Y++VDR+ K+IP      ++ +A+  +   +EA   +  V  L+++++ LEGL RH STH
Sbjct: 479  YAEVDRIAKMIPTVLNITIN-KALELNPELKEAYDNEERVKELIDVARALEGLPRHTSTH 537

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+VI  +PL   VP+ +    +  VTQF M  +E+ GL+K DFLGL+TLT+++ ++  
Sbjct: 538  AAGVVIASQPLVNYVPLQK--NEESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVRI 595

Query: 589  LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + + +G+ +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +EDIIA +
Sbjct: 596  IKENKGIDIDLDTIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGI 655

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            SLYRPGP+  I  Y   KN    I      ++P+L  T   I+YQEQVMQI + L+GYS+
Sbjct: 656  SLYRPGPMAEIPRYIANKNNPLNIEYATEKLEPILSVTYNCIVYQEQVMQIVRDLAGYSM 715

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADY 759
              +D++RRAM KK  + M+ +++ FI G  +        NGI + +A N+F+ +  FA Y
Sbjct: 716  GRSDLVRRAMSKKKHDVMELERKNFIYGNKEEGVKGCINNGIDEKVANNLFDSMMDFASY 775

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSHAAAYAV+ +QTA++  +YP EF+AA +     + +K+  +   A    I+I+ P
Sbjct: 776  AFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDSDKVSFYVNFAETLGIEIVAP 835

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLN 878
            ++N    +F V DNRI + L A+K VG     +I+ +      F  L DF ++VD+  +N
Sbjct: 836  NINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKGKFIDLSDFFNKVDTSIIN 895

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSD 936
            +R++ESL+ AGA DC    R ++L   + I    Q  ++N      N+F    +    S 
Sbjct: 896  KRLVESLIKAGAFDCLNVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNKESSM 955

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------ 990
             I        +     + E+ + G YFSGHPL+ Y+  L+        + ++        
Sbjct: 956  DIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKVQISHHISDIISKESLEGNM 1015

Query: 991  --------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                     G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1016 VDAINSIKDGDKVIVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|254448006|ref|ZP_05061470.1| DNA polymerase III, alpha subunit [gamma proteobacterium HTCC5015]
 gi|198262432|gb|EDY86713.1| DNA polymerase III, alpha subunit [gamma proteobacterium HTCC5015]
          Length = 1175

 Score = 1073 bits (2774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1060 (40%), Positives = 612/1060 (57%), Gaps = 52/1060 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL++H+ YSL++  + +  ++   A    PA+A+TD  NLF+ ++F   A AAGI
Sbjct: 2    SSSFVHLRLHTEYSLVDSVVRIKPLISTAAEQGMPALALTDQCNLFAMVKFFGAASAAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + + G            +  + + P      ++LL     GY+ L ELVS+ Y   Q   
Sbjct: 62   KALFGA----------DLLVRNEDPKKPSTVLLLLAMDDVGYRNLTELVSQAYTEGQAGG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I  +WL E  TEGLI L+GG  G I RA  FN  +     L  +K+ F +R Y+ LQ
Sbjct: 112  LPVIERTWL-EGRTEGLIALSGGPWGDIGRAIAFNHHEQIPPLLAFYKQHFPNRFYLELQ 170

Query: 188  RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            R     +       V LA  H+LP+VATN+  F+  +D+++H+V + +    ++    R 
Sbjct: 171  RTGREGEALYNETAVSLAAEHQLPVVATNDVRFIHADDFDSHEVRVCIHEGRLLDDPRRS 230

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               +P+ YL++  EMV +FSDLPEA+ENT+EIA+RC+    +    LP +   + + I  
Sbjct: 231  RHYSPEQYLRSPEEMVELFSDLPEAIENTLEIAKRCNVAPHMGEYFLPDYPVPDGETI-- 288

Query: 306  EEENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              ++  R ++  GLE R+ +     G        Q YR RL+ E+ VI  M F GYFLIV
Sbjct: 289  --DSFFRKQSQEGLEWRMEKLQRDTGTTWDEAKVQSYRDRLEREIGVILNMGFPGYFLIV 346

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLNP+R+SMPDFD+
Sbjct: 347  ADFIQWAKNNGVPVGPGRGSGAGSLVAYALKITDLDPIEYDLLFERFLNPERVSMPDFDV 406

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RD VI YV  KYG ++V+QIIT+GS+ AKA +RDVGR L   Y  VD + KLIP
Sbjct: 407  DFCMEGRDRVIDYVAQKYGRDQVSQIITYGSMAAKAVVRDVGRVLGHGYGFVDGIAKLIP 466

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +    +S QA+ +    ++    D  V  LL+++ KLEGL R+A  HA G+VI    L+
Sbjct: 467  MEVGITLS-QALEESEELKQRYEEDEEVTNLLDMALKLEGLSRNAGKHAGGVVIAPSKLT 525

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVK 595
               P+Y +      VTQF+   +E  GL+KFDFLGL+TLT++  +L  +  R        
Sbjct: 526  DFTPLYCEEGGGGLVTQFDKDDVEAIGLVKFDFLGLRTLTIINWALKEINSRLEAAGHPL 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D+  IP DD  T+ LL  + T  +FQLESSGM+  ++ +QPD  EDI+ALV+L+RPGP+
Sbjct: 586  LDIDAIPLDDAPTFDLLKAQQTTAVFQLESSGMKNLIKKLQPDSFEDIVALVALFRPGPL 645

Query: 656  DNIVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            D+ +V  +  RK+G++++   HP      + P+L+ T G+I+YQEQVMQIAQ++ GYSL 
Sbjct: 646  DSGMVDDFIRRKHGQDEVSYPHPDYQYDGLKPVLEPTYGIILYQEQVMQIAQVMGGYSLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQKE F+ G   NGI  ++A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADLLRRAMGKKKLEEMAKQKEVFLKGCGDNGIDLSLAENIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQTAW+K HYP  F+AA ++ + DN +K+    ++ R   + I+PP VN+    F
Sbjct: 766  YALVSYQTAWLKAHYPSAFMAAVLSADSDNTDKVVNLIEECRNMGLTILPPDVNSSAYKF 825

Query: 829  KVGDNRI-YYSLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             + D++   Y L A+KGVG      I  E  A+  +  L DFC R+D +KLNRRV E+L+
Sbjct: 826  TMQDDKTIRYGLGALKGVGQGVIEAINEEREANGDYADLLDFCRRIDGRKLNRRVTEALI 885

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSV 945
              GALD  G +R  L+ +L +    A   +KN+     +IF   +       + +     
Sbjct: 886  RGGALDSIGPNRASLMAALGDALMAASQHQKNQATGQVDIFGALDHSNEMASVDVPLIKE 945

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN----------- 994
             +   +   E+ VLG Y +GHP + +   L  +  K     V  +               
Sbjct: 946  WHEDDKLRAERDVLGLYLTGHPFNRFARELSAITHKNLHSHVEAVEAQESASRGDDFRAR 1005

Query: 995  ---IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                 +A +VV  Q K+   G+ +  VT  +     +   
Sbjct: 1006 AISATVAGLVVDVQSKRFGNGNELLIVTLDDRTDRVDLTL 1045


>gi|213969133|ref|ZP_03397272.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato
            T1]
 gi|301383972|ref|ZP_07232390.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato
            Max13]
 gi|302064142|ref|ZP_07255683.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato
            K40]
 gi|213926131|gb|EEB59687.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato
            T1]
          Length = 1173

 Score = 1073 bits (2774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1060 (39%), Positives = 609/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  + +   PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLAVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +R  D       V LA  H  PLVATN+  F+++ D+EAH+  + +     +    R   
Sbjct: 173  NRANDEEHLHAAVALAERHGAPLVATNDVRFINQADFEAHETRVCIGEGRALDDPRRSHN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FSDLPEALEN+VEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENSVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA               Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVDEAPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F V
Sbjct: 768  LVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              D RI Y L AIKGVG      I +A    PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  SDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KG 932
            ALD  G                +R  LL +L+   + A+   ++  + H ++F     + 
Sbjct: 888  ALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGGLFVEA 947

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  DADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 Q--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|294676350|ref|YP_003576965.1| DNA polymerase III subunit alpha [Rhodobacter capsulatus SB 1003]
 gi|294475170|gb|ADE84558.1| DNA polymerase III, alpha subunit [Rhodobacter capsulatus SB 1003]
          Length = 1169

 Score = 1072 bits (2773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 500/1058 (47%), Positives = 682/1058 (64%), Gaps = 50/1058 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL+VH+ YSLLEGA+ +  ++    A   PAIA+TDTN +F+ALEFS  A  AG
Sbjct: 2    SDPRFIHLRVHTEYSLLEGAVPVKKLIKLCDAMNMPAIAVTDTNAMFAALEFSVLAQGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +QPI+GCQ+ +  +    +   G+ P    P +VLL     GY  L++L S +Y+ D+G 
Sbjct: 62   LQPIVGCQVSVAYE----VAAPGEKPRLPAP-VVLLAQNEAGYMNLMKLSSCLYV-DKGG 115

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q  ++ L  L E   EGLI L+GG+ GP+ +    + +  A   +      +  RLYV L
Sbjct: 116  QLPQVTLEDL-EAHAEGLICLSGGAEGPVGKLLQHSQAGKARLLMERLAACYPTRLYVEL 174

Query: 187  QRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            QRH G        +R  E   V++AY   LPLVATN+  F   + YEAHD ++ +A    
Sbjct: 175  QRHPGEGGQLTEGERMTERPFVEMAYDLGLPLVATNDVYFPKSDMYEAHDAMICIAEGAY 234

Query: 240  VSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            V Q + R R+TP HYLK  +EM ++F+DLPEALENTVEIA+RC+F      PILPRF + 
Sbjct: 235  VDQIEPRRRLTPQHYLKTEAEMAALFADLPEALENTVEIAKRCAFAAFKRKPILPRFADD 294

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E +        ELR +A  GL  RLA   I       +Y +RL FEL +I +M F GYFL
Sbjct: 295  EVE--------ELRRQAWEGLRARLA--VIPHAVPVAEYEERLKFELGIIEQMGFPGYFL 344

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFI+W K   IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDF
Sbjct: 345  IVADFIKWGKSQGIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDF 404

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RDVGR LQM Y  VD+L K+
Sbjct: 405  DIDFCMDRREEVIKYVQGKYGRDKVGQIITFGALLSKAAVRDVGRVLQMSYGHVDKLSKM 464

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   PVS+ +A+AD+ R REA  ++  V RLL  +Q +EGL R+ASTHAAG+VIGDR
Sbjct: 465  IPVEGVKPVSIEKALADEPRLREAAKSEEVVARLLNYAQAIEGLLRNASTHAAGVVIGDR 524

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
            PL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + + G    
Sbjct: 525  PLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKSGRPLH 584

Query: 596  ----------------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
                             +++LIP DD +TY L     T+ +FQ+ES+GM  AL  M+P C
Sbjct: 585  VNPLGETLYTPAEGAANEINLIPIDDAKTYELYAAAKTVAVFQVESTGMMDALRRMKPTC 644

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            IEDI+ALV+LYRPGP++NI  Y   K+G   + S+HP IDP+LKETQG+I+YQEQVMQIA
Sbjct: 645  IEDIVALVALYRPGPMENIPTYCEVKHGLRPLESLHPTIDPILKETQGIIVYQEQVMQIA 704

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFAD 758
            Q+++GYSL  AD+LRRAMGKKI EEM K++ +FI GA   + I    A  +F+LL KFA+
Sbjct: 705  QVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFIEGAKATHNIDAKKAGEVFDLLEKFAN 764

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYA++SYQTAW+K ++PVEF+A  M  ++   +K+  +  +AR+   I+++
Sbjct: 765  YGFNKSHAAAYAIVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAIYTAEARRGLGIEVV 824

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            PP VN     F V D ++ Y+L A+K VG    R I +A  DKPF  L +F  R D K++
Sbjct: 825  PPCVNRSLATFDVVDQKLIYALGALKNVGVEAMRLIEKAREDKPFRDLVEFARRCDLKRI 884

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE L  AGA D    +R ++ +SL+++  ++  V + +++   ++F  E G     
Sbjct: 885  GKRPLEMLARAGAFDKLDPNRKRVFESLESLMAWSAAVAEAKSSAQVSLFG-EAGDDLPP 943

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--- 994
              L          R   E + +GFY SGHPLD Y P L++  +    +  A   G     
Sbjct: 944  PRLADTDDWLPGERLAEEHKAIGFYLSGHPLDDYLPALKRKKVLTLADVTAKALGQGPFI 1003

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++A  V ++ ++K+ KG+R  +V+ S+P   YE   F
Sbjct: 1004 GKIAGQVAARSERKSAKGNRFAFVSLSDPTGPYEVTVF 1041


>gi|165976527|ref|YP_001652120.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 3 str. JL03]
 gi|165876628|gb|ABY69676.1| DNA polymerase III alpha subunit [Actinobacillus pleuropneumoniae
            serovar 3 str. JL03]
          Length = 1158

 Score = 1072 bits (2773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1052 (39%), Positives = 612/1052 (58%), Gaps = 43/1052 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +TQ       FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  
Sbjct: 1    MTQQ-----RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYG 55

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            +A  +G++PIIG  + +  + + +              + LL     GY  +  L+S+ Y
Sbjct: 56   EALGSGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAY 105

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 +    +  +WL E+  EG+I+L+G  +G + +A    +   A++ +  +++ F +
Sbjct: 106  QQGYVEF-PLVEKAWLAEL-NEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPN 163

Query: 181  RLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  
Sbjct: 164  HYYLALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYT 223

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +    RP+  +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++    LP F   
Sbjct: 224  LDDPKRPKKYSPQQYFRSEQEMCALFADLPQAIENTVQIAMRCNVTVRLGEYFLPNFPTG 283

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +        E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F G
Sbjct: 284  DL-----STEDFLVKKSREGLEERLEFLFPDPEERKNKRSIYDERLQVELDVINQMGFPG 338

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SM
Sbjct: 339  YFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSM 398

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFD+DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+
Sbjct: 399  PDFDVDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRI 458

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KLIP DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI 
Sbjct: 459  SKLIPPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIA 517

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--- 592
               ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR   
Sbjct: 518  PTAITDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAR 577

Query: 593  --GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+
Sbjct: 578  EGKEPVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALF 637

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            RPGP+++ +   + +RK+G E++        H  + P+L  T GVI+YQEQVMQIAQ+L+
Sbjct: 638  RPGPLESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLA 697

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GY+L  AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNK
Sbjct: 698  GYTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNK 757

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+
Sbjct: 758  SHSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNS 817

Query: 824  PCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881
                F V +     Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR 
Sbjct: 818  GKHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRT 877

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITL 940
             E L+ +GA D  G  R  L+++L++  K +    K       ++F     T  + +   
Sbjct: 878  FEGLIMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAY 937

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                  +     E E+  LG Y SGHP+  +   L         E   T RG  + +A +
Sbjct: 938  ANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGI 997

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++  +   T++GSR+G  T  + + + +   F
Sbjct: 998  IMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|28868755|ref|NP_791374.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato
            str. DC3000]
 gi|28851994|gb|AAO55069.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato
            str. DC3000]
          Length = 1173

 Score = 1072 bits (2773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1060 (39%), Positives = 609/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  + +   PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLTVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +R  D       V LA  H  PLVATN+  F+++ D+EAH+  + +     +    R   
Sbjct: 173  NRANDEEHLHAAVALAERHGAPLVATNDVRFINQADFEAHETRVCIGEGRALDDPRRSHN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FSDLPEALEN+VEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENSVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA               Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVDEAPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F V
Sbjct: 768  LVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              D RI Y L AIKGVG      I +A    PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  SDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KG 932
            ALD  G                +R  LL +L+   + A+   ++  + H ++F     + 
Sbjct: 888  ALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGGLFVEA 947

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  DADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 Q--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|303253323|ref|ZP_07339472.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 2 str. 4226]
 gi|307248125|ref|ZP_07530153.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 2 str. S1536]
 gi|302648005|gb|EFL78212.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 2 str. 4226]
 gi|306855302|gb|EFM87477.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 2 str. S1536]
          Length = 1158

 Score = 1072 bits (2772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1052 (39%), Positives = 611/1052 (58%), Gaps = 43/1052 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +TQ       FVHL+VHS +S++     +  ++    A+   A+A+TD +N    ++F  
Sbjct: 1    MTQQ-----RFVHLKVHSDFSMINSLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYG 55

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            +A  +G++PIIG  + +  + + +              + LL     GY  +  L+S+ Y
Sbjct: 56   EALGSGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAY 105

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 +    +  +WL E+  EG+I+L+G  +G + +A    +   A++ +  +++ F +
Sbjct: 106  QQGYVEF-PLVEKAWLAEL-NEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPN 163

Query: 181  RLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  
Sbjct: 164  HYYLALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYT 223

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +    RP+  +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++    LP F   
Sbjct: 224  LDDPKRPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTG 283

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +        E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F G
Sbjct: 284  DL-----STEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPG 338

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SM
Sbjct: 339  YFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSM 398

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFD+DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+
Sbjct: 399  PDFDVDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRI 458

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KLIP DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI 
Sbjct: 459  SKLIPPDPGMTL-AKAFDAEPKLPELYEADEEVKELIDMARKLEGVTRNAGKHAGGVVIA 517

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--- 592
               ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR   
Sbjct: 518  PTAITDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAR 577

Query: 593  --GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+
Sbjct: 578  EGKEPVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALF 637

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            RPGP+++ +   + +RK+G E++        H  + P+L  T GVI+YQEQVMQIAQ+L+
Sbjct: 638  RPGPLESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLA 697

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GY+L  AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNK
Sbjct: 698  GYTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNK 757

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+
Sbjct: 758  SHSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNS 817

Query: 824  PCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881
                F V +     Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR 
Sbjct: 818  GKHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRT 877

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITL 940
             E L+ +GA D  G  R  L+++L++  K +    K       ++F     T  + +   
Sbjct: 878  FEGLIMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAY 937

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                  +     E E+  LG Y SGHP+  +   L         E   T RG  + +A +
Sbjct: 938  ANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGI 997

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++  +   T++GSR+G  T  + + + +   F
Sbjct: 998  IMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|14194702|sp|Q9XDH6|DPO3A_PSEFL RecName: Full=DNA polymerase III subunit alpha
 gi|5531684|gb|AAD44402.1|AF062919_1 DNA polymerase III [Pseudomonas fluorescens]
          Length = 1173

 Score = 1072 bits (2772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1060 (39%), Positives = 606/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  AGI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRIKPLVKALTGMGMPAVAVTDQNNMCSLVKFYKNAMGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +  +D          P   +  I LLV  A+GY+ L EL+SR ++  Q    V
Sbjct: 64   ICGADLWLSNKD----------PDGPLSRISLLVMNAQGYRNLTELISRGFIDGQRNGMV 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ E   EGLIML+    G I  A    +   AE     +  +F DR Y+ +QR 
Sbjct: 114  IIEREWVAE-ANEGLIMLSAAKEGEIGMAMIGGNPAEAEALAREWMAVFPDRFYLEIQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +R  D  +    V LA     PLVATN+  F+ +ED+ AH+  + +     +    R   
Sbjct: 173  NRPNDEEQLHGAVALADKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FSDLP+A+ENTVEIA+RC+  +++    LP +   +   I    
Sbjct: 233  YSDQQYLKSAEEMAELFSDLPDAIENTVEIAKRCNIDVKLGKHFLPDYPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRL-----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RL                Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV RA    +   DRL K++P +
Sbjct: 409  CMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSFGLADRLSKMVPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVD 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +         +D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++ DC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKLDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   HP      + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELAYPHPDYQYEGLQPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G + N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F V
Sbjct: 768  LVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  RI Y L AIKGVG      I EA    PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  NDEGRIVYGLGAIKGVGEGPVEAITEARQAGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            ALD  G                +R  LL +++   K A+   + R + H ++F       
Sbjct: 888  ALDRLGPYFHDEQKAYQANIDRNRAVLLAAMEEAIKSAEQTARTRDSGHADLFGGLFVEE 947

Query: 935  SDKITL--EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               +     K        R + E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  DADVYAIHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A M+++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 Q--TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045


>gi|307250356|ref|ZP_07532305.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 4 str. M62]
 gi|306857631|gb|EFM89738.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 4 str. M62]
          Length = 1158

 Score = 1072 bits (2772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1052 (39%), Positives = 612/1052 (58%), Gaps = 43/1052 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +TQ       FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  
Sbjct: 1    MTQQ-----RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYG 55

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            +A  +G++PIIG  + +  + + +              + LL     GY  +  L+S+ Y
Sbjct: 56   EALGSGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAY 105

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 +    +  +WL E+  EG+I+L+GG +G + +A    +   A++ +  +++ F +
Sbjct: 106  QQGYVEF-PLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENEAEADELVGFYQQYFPN 163

Query: 181  RLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  
Sbjct: 164  HYYLALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYT 223

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +    RP+  +P  Y ++  EM  +F+DLP+A+ENTV+IA RC+  +++    LP F   
Sbjct: 224  LDDPKRPKKYSPQQYFRSEQEMCVLFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTG 283

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +        E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F G
Sbjct: 284  DL-----STEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPG 338

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SM
Sbjct: 339  YFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSM 398

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFD+DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+
Sbjct: 399  PDFDVDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRI 458

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KLIP DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI 
Sbjct: 459  SKLIPPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIA 517

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--- 592
               ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR   
Sbjct: 518  PTAITDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAR 577

Query: 593  --GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+
Sbjct: 578  EGKEPVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALF 637

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            RPGP+++ +   + +RK+G E++        H  + P+L  T GVI+YQEQVMQIAQ+L+
Sbjct: 638  RPGPLESGMVQNFIDRKHGHEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLA 697

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GY+L  AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNK
Sbjct: 698  GYTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNK 757

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+
Sbjct: 758  SHSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNS 817

Query: 824  PCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881
                F V +     Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR 
Sbjct: 818  GKHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRT 877

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITL 940
             E L+ +GA D  G  R  L+++L++  K +    K       ++F     T  + +   
Sbjct: 878  FEGLIMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAY 937

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                  +     E E+  LG Y SGHP+  +   L         E   T RG  + +A +
Sbjct: 938  ANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGI 997

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++  +   T++GSR+G  T  + + + +   F
Sbjct: 998  IMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|303250150|ref|ZP_07336352.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
 gi|307252740|ref|ZP_07534631.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
 gi|302651213|gb|EFL81367.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
 gi|306859772|gb|EFM91794.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
          Length = 1158

 Score = 1072 bits (2772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1052 (39%), Positives = 612/1052 (58%), Gaps = 43/1052 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +TQ       FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  
Sbjct: 1    MTQQ-----RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYG 55

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            +A  +G++PIIG  + +  + + +              + LL     GY  +  L+S+ Y
Sbjct: 56   EALGSGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAY 105

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 +    +  +WL E+  EG+I+L+G  +G + +A    +   A++ +  +++ F +
Sbjct: 106  QQGYVEF-PLVEKAWLAEL-NEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPN 163

Query: 181  RLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  
Sbjct: 164  HYYLALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYT 223

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +    RP+  +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++    LP F   
Sbjct: 224  LDDPKRPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTG 283

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +        E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F G
Sbjct: 284  DL-----STEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPG 338

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SM
Sbjct: 339  YFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSM 398

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFD+DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+
Sbjct: 399  PDFDVDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRI 458

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KLIP DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI 
Sbjct: 459  SKLIPPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIA 517

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--- 592
               ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR   
Sbjct: 518  PTAITDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAR 577

Query: 593  --GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+
Sbjct: 578  EGKEPVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALF 637

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            RPGP+++ +   + +RK+G E++        H  + P+L  T GVI+YQEQVMQIAQ+L+
Sbjct: 638  RPGPLESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLA 697

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GY+L  AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNK
Sbjct: 698  GYTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNK 757

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+
Sbjct: 758  SHSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNS 817

Query: 824  PCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881
                F V +     Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR 
Sbjct: 818  GKHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRT 877

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITL 940
             E L+ +GA D  G  R  L+++L++  K +    K       ++F     T  + +   
Sbjct: 878  FEGLIMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAY 937

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                  +     E E+  LG Y SGHP+  +   L         E   T RG  + +A +
Sbjct: 938  ANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGI 997

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++  +   T++GSR+G  T  + + + +   F
Sbjct: 998  IMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|86136285|ref|ZP_01054864.1| DNA polymerase III subunit alpha [Roseobacter sp. MED193]
 gi|85827159|gb|EAQ47355.1| DNA polymerase III subunit alpha [Roseobacter sp. MED193]
          Length = 1170

 Score = 1071 bits (2771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 501/1061 (47%), Positives = 687/1061 (64%), Gaps = 51/1061 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+ H+ YSLLEGAL L  + D     + PAIA+TD+NNLFSALEFS  A  
Sbjct: 1    MTNAPRFIHLRSHTEYSLLEGALRLKKLPDLCKKHEMPAIAVTDSNNLFSALEFSVSASK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+           G+ P P  P +VLL  +  GY+ L++L S +YL  Q
Sbjct: 61   AGVQPIVGCQIDL----RFVEPAPGERPQPPAP-LVLLAQSEAGYEHLMKLNSCLYLR-Q 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G +   + L  L       +I L+GG  GP+ R         AE+ +   K +F DRLYV
Sbjct: 115  GSELPYVTLEDLA-TNAGDVICLSGGPDGPVGRLLRQGQRPAAEELMQRLKAIFADRLYV 173

Query: 185  NLQRHRGYDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G D   E++       V++AY  +LPLVATN+  F + E YEAHD ++ +A   
Sbjct: 174  ELQRHPGEDGQPEAEKLSERGHVEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K++ EMV++F+DLPEA+ENTVEIA+RC+F   +  PILP+F +
Sbjct: 234  YVDQSEPRRRLTAQHYFKSQEEMVALFADLPEAIENTVEIAKRCAFKAYLRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E          ELR  A  GL+ RLA   I      ++Y++RLDFEL +I  M F GYF
Sbjct: 294  DEV--------AELRRIANEGLQNRLA--VIPHAVSVEEYQERLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S+  ++ ++ R  E    +P VDRLL+   ++EGL R A THAAG+VIGD
Sbjct: 464  LIPVEGVKPMSIVDSLKEEPRLAEEAKNEPVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----- 591
            RPL  LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q     
Sbjct: 524  RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLIKQSGRDL 583

Query: 592  -------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                          G   +++ IP DD  TY L ++  T+ +FQ+ES+GM  AL+ M+P 
Sbjct: 584  HVAADGTPLYEPPTGAVNEINAIPLDDKPTYDLYSSAKTVAVFQVESTGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG +KI S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPTYCEVKNGLKKIESVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKIKE MD ++ +F  GA +NG+    A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAGENGVPAKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   +K+  + ++ ++   +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLGLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD----KPFDSLEDFCSRVD 873
            PP VN     F V +  + Y+L A+K VG    R + EA  D    +PF ++ DF  RV+
Sbjct: 824  PPCVNRSLATFNVVNGELVYALGALKNVGVDVMRLVAEARNDDGHERPFVNIFDFARRVN 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             KK+ +R LE L  AGA D    +R ++  SL+ +  Y+  + + + +   ++F  E G 
Sbjct: 884  LKKIGKRPLEMLARAGAFDQLDRNRRRVFDSLEGLVNYSNAIHEQKNSNQVSLFG-EAGD 942

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
               +  L        + R   E + +GFY SGHPLD Y P L++  +   +E +      
Sbjct: 943  DLPEPRLANTPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVMVKAERG 1002

Query: 994  N--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++A +V  +Q++K+ +G+R  +   S+    YE   F
Sbjct: 1003 PFLAKMAGVVAGRQERKSARGNRFAFAQLSDTTGGYEVTIF 1043


>gi|70728573|ref|YP_258322.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens Pf-5]
 gi|68342872|gb|AAY90478.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens Pf-5]
          Length = 1173

 Score = 1071 bits (2771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1060 (39%), Positives = 606/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +A    PA+A+TD NN+ S ++F + +  AGI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRIKPLVKALAGMGMPAVAVTDQNNMCSLVKFYKTSMGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +  +D          P   +  I LLV  A GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGADLWLSNKD----------PDNPLSRISLLVMNAVGYRNLTELISRGFIDGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ E   EGLIML+    G I  A      +VAE     +  +F +R Y+ +QR 
Sbjct: 114  IIEREWVAEAA-EGLIMLSAAKEGEIGMALIAGDLEVAETLAREWMAVFSERFYLEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +R  D  +    V LA     PLVATN+  F+ +ED+EAH+  + +     +    R   
Sbjct: 173  NRPNDEEQLHAAVALADKIGAPLVATNDVRFIKQEDFEAHETRVCIGEGRALDDPRRSKN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP +   +   I    
Sbjct: 233  YSDQQYLKSAEEMAELFSDLPEALENTVEIAKRCNIEVKLGKHFLPDYPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRL-----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RL                Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVD 597
             P+Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +         +D
Sbjct: 528  SPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   HP      + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELAYPHPDYQYDGLQPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G + N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F V
Sbjct: 768  LVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRIMKLRLDAPDVNTSEFKFTV 827

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  RI Y L AIKGVG      I EA    PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  NDEGRIVYGLGAIKGVGEGPVEAITEAREAGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            ALD  G                +R  LL +++   K A+   +   + H ++F       
Sbjct: 888  ALDRLGPHFFDEPKAYQANIDQNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGVFVDE 947

Query: 935  SDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               +     K        R + E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  DADVYANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A M+++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 Q--TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045


>gi|83592917|ref|YP_426669.1| DNA polymerase III subunit alpha [Rhodospirillum rubrum ATCC 11170]
 gi|83575831|gb|ABC22382.1| DNA polymerase III, alpha subunit [Rhodospirillum rubrum ATCC 11170]
          Length = 1170

 Score = 1071 bits (2771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 494/1038 (47%), Positives = 684/1038 (65%), Gaps = 20/1038 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VH++ S+ EGA+ +  ++   A    PA+AITD+ NLF ALE S  AC  G+QP
Sbjct: 19   GFVHLRVHTALSMSEGAIQVKALVKLCAKMGMPAVAITDSGNLFGALELSVTACDMGVQP 78

Query: 70   IIGCQLDIDMQD-NLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IIGCQ+ +  ++   +    G+    P   ++VLL   A GY  L+++VSR ++   G +
Sbjct: 79   IIGCQIAVRNEEVRERGFGAGRDLRAPDPDAVVLLAKNASGYANLMKIVSRSFIEGDGSE 138

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            + ++ L+ + E   +GLI+LTGG  GP+ R         A   L   K+ FGDR+YV +Q
Sbjct: 139  APQVRLADI-EALNDGLILLTGGVGGPLGRLLREGRRDEAAAILARHKEHFGDRVYVEIQ 197

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH   D  R E+ ++ LAY   + LVATN   +     +EAHDVL+ +   TV+  + R 
Sbjct: 198  RHGMADEDRIEADLIDLAYAQNVALVATNEPYYPDRAMFEAHDVLICMQQKTVIGDETRR 257

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R+TP+HY K  +EM ++F+DLPEA++NT+ IA+RC+ + +   PILP     +     + 
Sbjct: 258  RLTPEHYFKPANEMRALFADLPEAVDNTLVIAKRCAVMSEKRKPILPHSPAVKG----RT 313

Query: 307  EENELRNKAVAGLEVRLAQGAIAKG-------YHAQDYRQRLDFELNVIARMKFSGYFLI 359
            E   L   A  GL+ RL +    +G         A+ YR+RL +EL+VI +M F GYFLI
Sbjct: 314  EAEALCAMAEEGLDKRLEKHVYREGMSEAERIEIAKPYRERLAYELDVIIKMGFPGYFLI 373

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFIQWAK  +IPVGPGRGSGAGS  A+ALTITD+DPLRFSLLFERFLNP+R+SMPDFD
Sbjct: 374  VADFIQWAKDADIPVGPGRGSGAGSCVAWALTITDLDPLRFSLLFERFLNPERVSMPDFD 433

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQDRR+EVIRYVQ +YG+ERVAQIITFG LQA+A LR VGR LQMP   VD++CK++
Sbjct: 434  IDFCQDRREEVIRYVQREYGYERVAQIITFGKLQARAVLRSVGRVLQMPLGYVDKICKMV 493

Query: 480  PNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            PN+PA PV+L+ AI  + + R+ +  D  V RLL+I  KLEGLY HASTHAAG+VIGDRP
Sbjct: 494  PNNPAAPVTLKEAIEAEPQLRDLQKNDEMVARLLDIGMKLEGLYSHASTHAAGVVIGDRP 553

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            L  LV +YRD  SD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A+RG+ VDL
Sbjct: 554  LDNLVALYRDPHSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQHAVRHIAKRGITVDL 613

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  +Y +L    T G+FQLES+GMR  L  M+PD +EDI+A+V+LYRPGP+DNI
Sbjct: 614  LDLPLDDRRSYDMLGRGETSGVFQLESTGMRDVLRNMKPDTLEDIVAIVALYRPGPMDNI 673

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  RK G+E++V +H  ++P+LKET G++IYQEQVMQ AQ+++GYSL  AD+LRRAMG
Sbjct: 674  PSYIKRKKGEEEVVYLHDSLEPILKETYGILIYQEQVMQAAQIMAGYSLGGADLLRRAMG 733

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KKIK EMD Q+  F+ GA K G S+  A  +F+ +AKFA YGFNKSHAAAY +++YQTA+
Sbjct: 734  KKIKAEMDTQRALFVEGAGKRGTSEAKASEVFDQIAKFAGYGFNKSHAAAYGLVAYQTAY 793

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPVEF+AA+MT +M N +K+  F  + R+ +I ++PP VN     F V D  + Y+
Sbjct: 794  LKANYPVEFMAATMTYDMHNTDKLAVFKGELRRLDIPLLPPDVNRSFAVFGVEDGAVRYA 853

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L A+K VG      ++ E  A  PF  L DF  R+D K +N+R+LE+L+ AGALD     
Sbjct: 854  LGAVKNVGAAAMDALVAEREARGPFKDLADFARRLDGKVINKRLLENLIKAGALDSLDGD 913

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R +LL + D + ++AQ   ++R +   ++F     T    +     +    +    +E+ 
Sbjct: 914  RAKLLANADVLMRHAQAAAEDRASNQSSLFGGAGATSEPPMKFRACAAWTITETLAHERD 973

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG---NNIRLAAMVVSKQQKKTRKGSR 1014
             +GFY S HPLD+Y   L ++ +   E     +RG     ++LA    +++++  + GSR
Sbjct: 974  AMGFYLSAHPLDIYGDSLERLDVVPIEMLPGHLRGGGSGAVKLAVTPGARKERIGKSGSR 1033

Query: 1015 IGWVTFSEPAKEYEANFF 1032
              +V  S+     E   F
Sbjct: 1034 YAFVELSDATGSCETMVF 1051


>gi|110834019|ref|YP_692878.1| DNA polymerase III subunit alpha [Alcanivorax borkumensis SK2]
 gi|110647130|emb|CAL16606.1| DNA polymerase III, alpha subunit [Alcanivorax borkumensis SK2]
          Length = 1166

 Score = 1071 bits (2770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1055 (39%), Positives = 613/1055 (58%), Gaps = 48/1055 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL++H+ YSL++G + +  +      +Q PA+A+TD +NLF+ ++F Q A  AGI+
Sbjct: 4    PRFVHLRLHTDYSLVDGIVRVKELTKTCVNEQIPAVAVTDDSNLFALIKFYQNAMNAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P++G  L +             T       +  LV    GYQ L  L+SR +  +Q +  
Sbjct: 64   PLMGADLWV-----------QGTHIDEPAYLSFLVLNEVGYQNLTLLISRAWQTNQDRGR 112

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   WL E+  EGLI+L+  S G + +       + A++        +GDR Y+ +QR
Sbjct: 113  ALVKPEWLAEL-NEGLIVLSAASQGEVGQLLLAGKHEQAQQYARWLVSTYGDRFYLEVQR 171

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D       V LA    LP+VATN+  FL  ED+EAH+  + +     +    RP+
Sbjct: 172  TSRPGDEDCLHASVALAEQLGLPVVATNDVRFLRREDFEAHESRVCIHDGNTLDDPRRPK 231

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              + + YLK+  EM  +FSDLPEALENTVEIARRC+  +++    LP F   E   I   
Sbjct: 232  KYSEEQYLKSADEMAQLFSDLPEALENTVEIARRCTLDIRLGENFLPDFPIPEGMTI--- 288

Query: 307  EENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             E      +  GLE RL               +DY  RL FEL++I +M F GYFLIVAD
Sbjct: 289  -EQYFEKVSHDGLEERLKVLLDSDDPEYALKRKDYDDRLRFELDIINQMGFPGYFLIVAD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLNP+R+SMPDFD+DF
Sbjct: 348  FIQWAKDNEVPVGPGRGSGAGSLVAYALKITDLDPIGYDLLFERFLNPERVSMPDFDVDF 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C ++RD VI YV +KYG + V+QIITFG++ AKA +RDV R    PY   DRL K+IP  
Sbjct: 408  CMEKRDRVINYVADKYGRDAVSQIITFGTMAAKAVVRDVARVQGKPYGLADRLSKMIPGV 467

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537
            P   +S +A+  +   RE   +D + D+     ++E++ KLEGL R+   HA G+VI   
Sbjct: 468  PGMTLS-KALEQEETLREFLESDENSDKEAANEIMEMAFKLEGLTRNVGKHAGGVVIAPG 526

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD--FLAQRGVK 595
             L+   P+Y +      VTQ++   +E AGL+KFDFLGLKTLT++  ++    + +    
Sbjct: 527  KLTDFAPLYCEEDGTNLVTQYDKDDVESAGLVKFDFLGLKTLTIIDWAVKAANVKRAREG 586

Query: 596  VD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            +D   +  IP DD  ++ LL    T  +FQLES GM++ ++ ++PD  EDIIALV+LYRP
Sbjct: 587  LDDLVIDHIPLDDSPSFDLLKRGDTTAVFQLESQGMKELIKKLKPDVFEDIIALVALYRP 646

Query: 653  GPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+++ +   + NRK+G+E +        H  ++P+LK + GVI+YQEQVMQIAQ L+GY
Sbjct: 647  GPLESGMVDNFVNRKHGREPLAYPDPQYQHEWLEPILKPSYGVILYQEQVMQIAQELAGY 706

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM+KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH
Sbjct: 707  TLGGADMLRRAMGKKKPEEMEKQRAIFEEGAKGKGVDAGLAMKIFDLVEKFAGYGFNKSH 766

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA+++YQTAW+K HYP EF+AA+++ +M N +K+  F  + +   +Q++PP VN+  
Sbjct: 767  SAAYALVAYQTAWLKVHYPAEFMAATISADMQNTDKVVTFIDECKTMGLQVLPPDVNSCG 826

Query: 826  VDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLE 883
              F V       Y L AIKG+G      I+ A A+   F  L DFC R+D KK+NRR LE
Sbjct: 827  YRFTVNPEGDIVYGLGAIKGLGEGPIEAIVTARAEGGEFKDLFDFCRRIDLKKINRRSLE 886

Query: 884  SLVFAGALDCFGYS-----RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            ++V AG LD  G +     R QLL +L +    A    +N      ++F     + +  +
Sbjct: 887  AMVRAGVLDKLGLNSSFHDRAQLLATLPDAIAAADQDARNEAAGIMDMFGAMDDSPATAV 946

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
              +     N   R   E+  LG + +GHP+D Y+  +++           T +G    +A
Sbjct: 947  EWKPARSWNDETRLNGERDTLGLFLTGHPIDQYEKEVQQFVTARINALQPTAKGEAATVA 1006

Query: 999  AMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
             +VV+ +  ++++ G R+ ++T  +     E + F
Sbjct: 1007 GLVVALRITRSKRSGERMAFITLDDKTGRVEVSVF 1041


>gi|307692527|ref|ZP_07634764.1| DNA polymerase III DnaE [Ruminococcaceae bacterium D16]
          Length = 1155

 Score = 1071 bits (2770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1051 (36%), Positives = 584/1051 (55%), Gaps = 45/1051 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ +SLL+GA  +  ++ ++    Q A+AITD   ++  ++F +    AGI+P
Sbjct: 2    SFVHLHLHTEFSLLDGACRIQKLVQRVKDLGQEAVAITDHGVMYGVIDFYRACKGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +   +   +          +VLL    EGY+ L  +VS+ +L        
Sbjct: 62   IIGCEVYVAPRGRTRF-QKVHEYDAAFSHLVLLCRNEEGYRNLSYMVSQGFLEG-FYIKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI L  L+E    GLI L+    G I +         A++  L  ++LF  D  Y+ LQ 
Sbjct: 120  RIDLDLLRE-HCGGLIALSACLGGEIPKLLMAGDYDKAKEVALEMRELFGEDGYYLELQD 178

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    + + ++ +++L     +PLV TN++ +L  ED E  D+LM +     V    R +
Sbjct: 179  HNIPAQKKVNEGILRLHEETGIPLVCTNDAHYLRREDAEMQDILMCIQMGKTVDDPGRMK 238

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + Y+K+  EM ++F    EAL+NT +IA+ C+         LP F   E       
Sbjct: 239  FETQEFYVKSEEEMAALFPR--EALDNTAKIAQLCNVDFTFGKYHLPHFQLPEGWSDGY- 295

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                     + G   R             +YR++LD+E+ +I +M F  YFLIV+DFI +
Sbjct: 296  --AYFEKLCLDGFRWRYPD-------EPAEYRKQLDYEMAMIQKMGFVDYFLIVSDFIAY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + IPVGPGRGS AGS+ +Y L ITD+DP++++L FERFLNP+R++MPD DIDFC  R
Sbjct: 347  AKGHGIPVGPGRGSAAGSMVSYCLNITDLDPMKYNLYFERFLNPERVTMPDIDIDFCIRR 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA-- 484
            R EVI YV  KYG + VAQI+TFG++ A+AA+RDVGR L MPY+ VD + K IP+ P   
Sbjct: 407  RQEVIDYVARKYGADHVAQIVTFGTMAARAAVRDVGRVLNMPYADVDVIAKQIPSGPGAL 466

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            H    +A+      +E+  +D  V +L++ +  +EG+ R+ STHAAG+VI  RP+S  VP
Sbjct: 467  HITLEEALKLSKPLKESYDSDYKVKKLIDTAMAIEGMPRNTSTHAAGVVITSRPVSDYVP 526

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            + +    DL VTQ+ M  +E+ GL+K DFLGL+ LT+L  ++  + ++    D+  IP D
Sbjct: 527  LAK--NDDLVVTQYIMTTLEELGLLKMDFLGLRNLTVLDDAVKLVRRKEPDFDIHNIPED 584

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  T+ +++   T G+FQ+ESSGM     G++P  IED+ A+V+LYRPGP+++I  + + 
Sbjct: 585  DEATFRMISEGRTSGVFQMESSGMTGVCVGLKPHSIEDLTAIVALYRPGPMESIPRFISC 644

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            KN  EK+   HP + P+L  T G I+YQEQV+QI Q L GYSL +AD++RRAM KK  ++
Sbjct: 645  KNNPEKVTYKHPSLVPILSNTYGCIVYQEQVIQIFQQLGGYSLGQADMVRRAMSKKKVKD 704

Query: 725  MDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            ++K++E F        I+G + NGI + +A +I++ +  FA+Y FNK+HA  YA+++YQT
Sbjct: 705  IEKERETFLHGDPERNIAGCAANGIPENVAQSIYDEIYDFANYAFNKAHAVCYALVAYQT 764

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            AW K H+P E++AA +T  +D+ EK+ ++  + ++++IQ++PP VN    +F V    I 
Sbjct: 765  AWFKCHHPKEYMAALLTSVLDSSEKVAEYIAECKEWDIQLLPPDVNESETNFTVSPQGIR 824

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            + LAA+KGVG +    ++E      PF    DFC R+    LNRRVLESL+ AGA D  G
Sbjct: 825  FGLAALKGVGRSVMNAMLEERVKHGPFTDFMDFCDRMFDHDLNRRVLESLIKAGAFDRMG 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENI----FAHEKGTFSDKITLEKFSVENSSVR 951
              R QL+Q    +        K       ++        +      + L           
Sbjct: 885  CRRSQLMQVFGQVLDGIAASRKRNVEGQMDLFGFGGGEGESAPLPTLHLPDIPEYTPQEL 944

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT----------IRGNNIRLAAMV 1001
               E+ V G Y +GHP+D Y+ I RK G       +              G  + +A ++
Sbjct: 945  MTMEKEVTGLYLTGHPMDAYREIARKRGAVTIGSILNDFDGEEGPQRFRDGERVTVAGVI 1004

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + + + TR  + + +V   +     E   F
Sbjct: 1005 ATYKTRTTRNNTLMAYVNLEDDTASMELLCF 1035


>gi|225572766|ref|ZP_03781521.1| hypothetical protein RUMHYD_00957 [Blautia hydrogenotrophica DSM
            10507]
 gi|225039823|gb|EEG50069.1| hypothetical protein RUMHYD_00957 [Blautia hydrogenotrophica DSM
            10507]
          Length = 1156

 Score = 1071 bits (2770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1047 (36%), Positives = 582/1047 (55%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +   ++++      + AITD   ++  ++F +   AAGI P
Sbjct: 2    NFTHLHVHTEYSLLDGSNKITEYVERVKELGMDSAAITDHGVMYGCIDFYRACKAAGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +                     +VLL    +GY  L+++VS+ ++        
Sbjct: 62   ILGCEVYVAPSSRFDRETGAGE--DRYYHLVLLAENNQGYSNLMKIVSKSFVEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+ L+ L+E   EG+I L+   +G + R       +  +K  L ++++F     ++ LQ 
Sbjct: 119  RVDLALLREYH-EGIIALSACLAGEVARYLTRGMYEEGKKAALRYEEIFGKGNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +     Q++++     + LVATN+  +   ED   HD+L+ +     +S ++R R
Sbjct: 178  HGISQQQTVNQQLLRMHQETGIDLVATNDVHYTYAEDEAPHDILLCIQTGKKLSDENRMR 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  +M  +F    EALENT +I +RC   ++     LP++   E       
Sbjct: 238  YVGGQYYVKSAEQMAELFPYALEALENTYKIGQRCHVDIEFGVTKLPKYDVPEG----YT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GLE R            ++ RQRL +EL+ I  M +  YFLIV DFI++
Sbjct: 294  SWEYLNKLCFEGLEERYQP-------VTEELRQRLSYELDTIKNMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ + I VGPGRGS AGS+ +Y L IT +DP+R+ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  ARDHGIMVGPGRGSAAGSLVSYTLGITKLDPMRYDLLFERFLNPERVSMPDIDVDFCFER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG+L A+  +RDVGR L MPYSQVD + K+IP +    
Sbjct: 407  RQEVIDYVVKKYGKDRVVQIVTFGTLAARGVIRDVGRVLDMPYSQVDTIAKMIPTELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            + L A+  +    +    DP +  L++++++LEGL RH S HAAG+VI  + + + VP+ 
Sbjct: 467  IDL-ALKKNPELAKVYEEDPEIHHLIDMAKRLEGLPRHTSMHAAGVVISQKDVDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
            R        TQF M  +E+ GL+K DFLGL+TLT++Q +++ + A +G+ +D+  I ++D
Sbjct: 526  RAA-DGTITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVELVEADKGIHLDMDAIDYND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +    L T  T G+FQLES GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   K
Sbjct: 585  PKVLDSLGTGHTDGVFQLESGGMKSFMKELKPQSLEDVIAGISLYRPGPMDFIPQYIRGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I    P ++P+LK T G I+YQEQVMQI + L GY+L  +D+LRRAM KK    M
Sbjct: 645  NHPETITYDCPQLEPILKATYGCIVYQEQVMQIVRNLGGYTLGRSDLLRRAMSKKKASVM 704

Query: 726  DKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K+++ F+ G  +        NGI + IA  I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 705  EKERQSFVYGNEEEGVPGCINNGIDEKIANRIYDNMIDFAKYAFNKSHAAAYAVVSYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YPVEF+AA MT  +DN  K+ ++    R+  IQI+PP +N     F V    I Y
Sbjct: 765  FLKYYYPVEFMAALMTSVIDNPGKVSEYIFTCRKMGIQILPPDINRGETVFSVDHGAIRY 824

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            +LAAIK +G +    I++    +  F S++DF +R+++K +N+R LE+ + AGA DC   
Sbjct: 825  ALAAIKSIGKSVIDEIVKERKTNGEFVSMKDFVTRINNKDINKRSLENFIKAGAFDCLEG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     + + A   +KN      ++F    E+     +I L K    +       
Sbjct: 885  NRRQQMMVYPLVMESAIQEKKNMMAGQMSLFDLVGEEDKKDYEIQLPKVEEYDQDTLLNF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+ Y+ ++ K       +              G    +  M+  K+ 
Sbjct: 945  EKEVLGIYISGHPLEKYRALMEKNVTAWTSDFQPDEETGFPKVKDGVKAIIGGMITEKKV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K TR    + ++T  +     E   FP
Sbjct: 1005 KYTRTNKVMAFLTLEDLVGIVEVVVFP 1031


>gi|304321355|ref|YP_003854998.1| DNA polymerase III subunit alpha [Parvularcula bermudensis HTCC2503]
 gi|303300257|gb|ADM09856.1| DNA polymerase III, alpha subunit [Parvularcula bermudensis HTCC2503]
          Length = 1152

 Score = 1071 bits (2770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 517/1038 (49%), Positives = 675/1038 (65%), Gaps = 25/1038 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + +FVHL +HSSYSL EGA+ ++  L      Q PA+A+TDTNNLF ALE ++   A G+
Sbjct: 2    AKTFVHLHLHSSYSLAEGAIPVSKALQLAKGHQMPALAVTDTNNLFGALEVAEILSAEGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            QPI G +L +  +         +     + SIVLL   A G++RL+ L S  +L     +
Sbjct: 62   QPIPGIELKVATES----AEPVRDEAGNLASIVLLAQNAVGFERLMALSSEAFLTPLEGE 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            +  + LS + +  TEGLI L+GG+ GPIDR         A   L      F  R YV LQ
Sbjct: 118  TTGVPLSAVLQ-RTEGLICLSGGALGPIDRLLAEGRCSEALALLDRMAAAFPQRFYVELQ 176

Query: 188  RHRGYDRY-------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            RH  +DR         E  +V+ AY   LP+VATNN  F S  D+ AHD L+ +A    +
Sbjct: 177  RHPHHDRTDQQGRYPEERALVEAAYARSLPIVATNNVYFPSPADHAAHDALLCIAGGRYL 236

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            S+ DR  V+ DHY K+  EM  +F DLPEA+E TVE+A+RC+F  + H PILP F     
Sbjct: 237  SEVDRRLVSEDHYFKSAEEMSGLFKDLPEAIETTVEVAQRCAFRPRTHQPILPSFAGDLA 296

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             ++      ELR +A  GL  RLA   I      QDY  RL+ EL +I +M F GYFLIV
Sbjct: 297  GEVA-----ELRRQAEEGLAARLAD--IPAAAPHQDYYDRLERELGIIEKMGFPGYFLIV 349

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFIQWAK   IPVGPGRGSGAGS+ AYALTITD+DPLRF LLFERFLNP+R+SMPDFDI
Sbjct: 350  ADFIQWAKSAGIPVGPGRGSGAGSLVAYALTITDLDPLRFHLLFERFLNPERVSMPDFDI 409

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQDRRDEVI YV+++YG +RVAQIITFG LQA+A LRDVGR LQMP+ QVDRLCK++P
Sbjct: 410  DFCQDRRDEVIAYVRDRYGADRVAQIITFGKLQARAVLRDVGRVLQMPFGQVDRLCKMVP 469

Query: 481  NDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            N+PA+PV+L+   D + RFRE R  DP V  L++ + +LEGLYRHASTHAAG+VIGDRPL
Sbjct: 470  NNPANPVTLKEAVDGEPRFREERERDPMVGTLIDTALRLEGLYRHASTHAAGVVIGDRPL 529

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            ++LVP+YRD RSD+P TQ+NMKW+E AGL+KFDFLGLKTLT++Q++LDFL   G  +D+S
Sbjct: 530  TELVPLYRDSRSDMPATQYNMKWVEPAGLVKFDFLGLKTLTVIQRALDFLKADGTDLDIS 589

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD  TY +L     +G+FQLES+GMR  L+G+Q DC+EDIIALVSLYRPGP+DNI 
Sbjct: 590  AIPLDDPATYDMLGRGAAIGVFQLESAGMRATLKGLQADCLEDIIALVSLYRPGPMDNIP 649

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  RK G+E    +HPL++ +LKET GVIIYQEQVMQIAQ+L+GYSL EAD+LRRAMGK
Sbjct: 650  TYIERKAGREPPDYLHPLLEDVLKETYGVIIYQEQVMQIAQILAGYSLGEADLLRRAMGK 709

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K KEEMDKQK RF+ GA++ G+S   A  IFEL+AKFA YGFNKSHAAAYA +SYQTA++
Sbjct: 710  KKKEEMDKQKIRFVDGAAEKGVSAAKAEGIFELVAKFAGYGFNKSHAAAYAWVSYQTAYL 769

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K ++P  FLAASM+L+    +K+  F  +A++  + + PP VN    DF V    + Y+L
Sbjct: 770  KANHPAAFLAASMSLDQSLTDKLSVFVAEAKRCGVVVEPPCVNESQADFAVSGETLRYAL 829

Query: 840  AAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             A+K VG    + +  E +   PF  L D   RVD +K+ +R LE L  AGA D  G  R
Sbjct: 830  GALKNVGAEGMQVLTTERARGGPFRDLYDLAERVDLRKVGKRSLEQLARAGAFDALGVDR 889

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQR 957
               + + D + +Y+    + R +    +F    +G    +  L +     +  R E E+ 
Sbjct: 890  ASAMAAADFLLRYSAAAAEERGSAQAGLFGGMAEGESLARPALPQCPPWPNVERLEQERT 949

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATI---RGNNIRLAAMVVSKQQKKTRKGSR 1014
             LGFY SGHPLD +  +L   G   Y +  + +      ++ LA  V    +++++ G  
Sbjct: 950  ALGFYMSGHPLDDFDSLLAAKGAVSYADIASVVGEGESRHVCLAGAVNEVTRRRSKSGKP 1009

Query: 1015 IGWVTFSEPAKEYEANFF 1032
              WV  S+ + ++E   F
Sbjct: 1010 FAWVRLSDRSGDFEVTVF 1027


>gi|307257156|ref|ZP_07538928.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 10 str. D13039]
 gi|306864318|gb|EFM96229.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 10 str. D13039]
          Length = 1158

 Score = 1071 bits (2770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1052 (39%), Positives = 612/1052 (58%), Gaps = 43/1052 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +TQ       FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  
Sbjct: 1    MTQQ-----RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYG 55

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            +A  +G++PIIG  + +  + + +              + LL     GY  +  L+S+ Y
Sbjct: 56   EALGSGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAY 105

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 +    +  +WL E+  EG+I+L+G  +G + +A    +   A++ +  +++ F +
Sbjct: 106  QQGYVEF-PLVEKAWLAEL-NEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPN 163

Query: 181  RLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ L R  R  +     Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  
Sbjct: 164  HYYLALCRTSRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYT 223

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +    RP+  +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++    LP F   
Sbjct: 224  LDDPKRPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTG 283

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +        E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F G
Sbjct: 284  DL-----STEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPG 338

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SM
Sbjct: 339  YFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSM 398

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFD+DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+
Sbjct: 399  PDFDVDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRI 458

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KLIP DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI 
Sbjct: 459  SKLIPPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIA 517

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--- 592
               ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR   
Sbjct: 518  PTAITDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAR 577

Query: 593  --GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+
Sbjct: 578  EGKEPVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALF 637

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            RPGP+++ +   + +RK+G E++        H  + P+L  T GVI+YQEQVMQIAQ+L+
Sbjct: 638  RPGPLESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLA 697

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GY+L  AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNK
Sbjct: 698  GYTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNK 757

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+
Sbjct: 758  SHSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNS 817

Query: 824  PCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881
                F V +     Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR 
Sbjct: 818  GKHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRT 877

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITL 940
             E L+ +GA D  G  R  L+++L++  K +    K       ++F     T  + +   
Sbjct: 878  FEGLIMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAY 937

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                  +     E E+  LG Y SGHP+  +   L         E   T RG  + +A +
Sbjct: 938  ANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGI 997

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++  +   T++GSR+G  T  + + + +   F
Sbjct: 998  IMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|126737384|ref|ZP_01753119.1| DNA polymerase III subunit alpha [Roseobacter sp. SK209-2-6]
 gi|126721969|gb|EBA18672.1| DNA polymerase III subunit alpha [Roseobacter sp. SK209-2-6]
          Length = 1170

 Score = 1071 bits (2770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 502/1061 (47%), Positives = 689/1061 (64%), Gaps = 51/1061 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+ H+ YSLLEGAL L  + D     + PAIA+TD+NNLFSALEFS  A  
Sbjct: 1    MTNTPRFIHLRTHTEYSLLEGALRLKKLPDLCKKHEMPAIAVTDSNNLFSALEFSVSASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+D+           G+ P P  P +VLL     GY+ L++L S +YL  Q
Sbjct: 61   AGVQPIIGCQVDL----RYFEPAPGERPKPPAP-LVLLAQNEAGYEHLMKLNSCLYLR-Q 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G +   + L  L E+    +I L+GG  GP+ R         AE+ +   K +F DRLYV
Sbjct: 115  GGELPHVTLEELAELAG-DVICLSGGPDGPVGRLLQQGQRPAAEELMQRLKAIFPDRLYV 173

Query: 185  NLQRHRGYDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G     E++       V++AY  +LPLVATN+  F + E YEAHD ++ +A   
Sbjct: 174  ELQRHPGEQGQPEAEKLSERGHVEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K++ EMV++F+DLPEA+ENTVEIA+RC+F+     PILP+F +
Sbjct: 234  YVDQAEPRRRLTAQHYFKSQEEMVALFADLPEAIENTVEIAKRCAFMAYRRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E          ELR  A  GL+ RLA   I      ++Y++RLDFEL +I  M F GYF
Sbjct: 294  DEV--------AELRRIANEGLQQRLA--VIPHAVSVEEYQERLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S+  ++ ++ R RE    +  VDRLL+   ++EGL R A THAAG+VIGD
Sbjct: 464  LIPVEGVKPMSIVDSLKEEPRLREEAENEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
            RPL  LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q G   
Sbjct: 524  RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDL 583

Query: 596  -----------------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               ++ IP DD  TY L +   T+ +FQ+ES+GM  AL+ M+P+
Sbjct: 584  HVAEDGSQLYEPPEGAANQINAIPLDDAVTYKLYSAAKTVAVFQVESTGMMDALKRMKPN 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG ++I S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPTYCEVKNGLKQITSVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++ Y+L  AD+LRRAMGKKIKE MD ++ +F  GA++NG+ K  A  +F+LL KFA+
Sbjct: 704  AQVMANYTLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   EK+  + ++ ++   +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTEKLAIYFEEVKKGLGLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA----DKPFDSLEDFCSRVD 873
            PP VN     F V +  + Y+L A+K VG    R + EA      ++PF S+ DF  RV+
Sbjct: 824  PPCVNRSEATFNVVNGELVYALGALKNVGVDVMRLVAEARREDGQERPFVSIFDFARRVN 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             KK+ +R LE +  AGA D    +R ++ +SL+ +  Y+  V   + +   ++F  E G 
Sbjct: 884  LKKVGKRPLEMMTRAGAFDQLDRNRRRVFESLEALVNYSAAVHDQKNSNQVSLFG-EAGD 942

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
               +  L        + R   E + +GFY SGHPLD Y P L++  +   +E +A     
Sbjct: 943  DLPEPRLAGTPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVMAKAERG 1002

Query: 994  N--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++A +V  +Q++K+++G+R  +   S+    YE   F
Sbjct: 1003 PFMAKMAGVVAGRQERKSQRGNRFAFAQLSDTTGAYEVTIF 1043


>gi|168181975|ref|ZP_02616639.1| DNA polymerase III, alpha subunit [Clostridium botulinum Bf]
 gi|237796833|ref|YP_002864385.1| DNA polymerase III DnaE [Clostridium botulinum Ba4 str. 657]
 gi|182674724|gb|EDT86685.1| DNA polymerase III, alpha subunit [Clostridium botulinum Bf]
 gi|229263138|gb|ACQ54171.1| DNA polymerase III, alpha subunit [Clostridium botulinum Ba4 str.
            657]
          Length = 1185

 Score = 1071 bits (2770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1075 (35%), Positives = 606/1075 (56%), Gaps = 55/1075 (5%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q+ EK P +V L  H+ YSLL+ +  +++++ +       +IAITD   ++  ++F ++
Sbjct: 4    NQFDEKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKE 63

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   GI+PIIGC++ +  +    M  + +        +VLLV    GY+ L+E+VS+  +
Sbjct: 64   AIKQGIKPIIGCEIYVASKS---MYIKQQDKENETHHLVLLVKNEIGYKNLMEIVSKASV 120

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                    R+   +L++  +EGLI L+    G +       + + AE+  L +K +F + 
Sbjct: 121  EG-FYYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFKEG 178

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ LQ H   ++ + ++ +V+++   ++PLVATN+  ++ +EDY++HD+L+ +     V
Sbjct: 179  FYLELQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTV 238

Query: 241  SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +++R R   D  YLK+  EM   FS +PEALENTV+I+  C+F    H   LP+F  +E
Sbjct: 239  EEENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEE 298

Query: 300  CDDIQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYR-------------QRLDFE 344
              D        LR     GL +R    +  I K +   +               +RL++E
Sbjct: 299  GVDPY----EYLREICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNYE 354

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L++I +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+F
Sbjct: 355  LSIIKQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIF 414

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNPDR+SMPD D DFC +RR EVI YV  KYG   V+QIITFG++ A+A +RDVGRA
Sbjct: 415  ERFLNPDRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDVGRA 474

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            +  PY++VDR+ K+IP      ++ +A+  +   +EA   +  V  L+++++ LEGL RH
Sbjct: 475  MNYPYAEVDRIAKMIPTVLNITIN-KALGLNPELKEAYDNEERVKELIDVARALEGLPRH 533

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             STHAAG+VI  +PL   VP+ +    +  VTQF M  +E+ GL+K DFLGL+TLT+++ 
Sbjct: 534  TSTHAAGVVIASQPLVNYVPLQK--NEESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRD 591

Query: 585  SLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++  + + +G+ +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +EDI
Sbjct: 592  AVRIIRENKGIDIDLDTIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDI 651

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            IA  SLYRPGP+  I  Y   KN   KI      ++P+L  T   I+YQEQVMQI + L+
Sbjct: 652  IAGNSLYRPGPMAEIPTYIANKNNPSKIKYSTQKLEPILSVTYNCIVYQEQVMQIVRDLA 711

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK--------NGISKTIAVNIFELLAK 755
            GYS+  +D++RRAM KK  + M+++++ FI G  K        NGI + +A N+F+ +  
Sbjct: 712  GYSMGRSDLVRRAMSKKKHDVMEQERKSFIYGNEKEGVKGCINNGIDEKVANNLFDSMMD 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSHAAAYAV+S+QTA++  +YP EF+AA +     + +++  +   A    IQ
Sbjct: 772  FASYAFNKSHAAAYAVVSFQTAYLMRYYPTEFIAAMLNSVKGDSDRVSFYVNFAETLGIQ 831

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            I+ P++N    +F V DNRI + L A+K VG     +I+ +      F  L DF ++VD+
Sbjct: 832  IIAPNINESYSNFTVKDNRIIFGLTAVKNVGERGIDNIVLSREQKGKFIDLSDFFNKVDT 891

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKG 932
              +N+R++ESL+  GA DC    R ++L   + I    Q  +++      N+F    +  
Sbjct: 892  SIINKRLVESLIKTGAFDCLNVYRSKMLAVFEKIMDGIQKQKRSNIEGQVNLFMDIMDNK 951

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-- 990
              S  I        +     + E+ + G YFSGHPL+ Y+  L+        + +     
Sbjct: 952  ESSMDIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIITKESL 1011

Query: 991  ------------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                         G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1012 EGNLVDTMNSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|114321000|ref|YP_742683.1| DNA polymerase III, alpha subunit [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227394|gb|ABI57193.1| DNA polymerase III, alpha subunit [Alkalilimnicola ehrlichii MLHE-1]
          Length = 1182

 Score = 1071 bits (2769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1071 (39%), Positives = 628/1071 (58%), Gaps = 58/1071 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL VHS +SL +G L +  ++D +A    PA+AITD  NLF  ++F + A A
Sbjct: 1    MSAQSGFVHLNVHSEFSLSDGILRIPELVDAVAGQGMPAVAITDQGNLFGMVKFYKAALA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PI+G ++ ++ ++  +             ++ LL    +GY  L  L+S  Y   +
Sbjct: 61   AGVKPIVGAEIRVEDEEAER----------DHSALTLLCRDLDGYAALSRLLSLSYQQGR 110

Query: 125  G-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                +  +  +WL E   EGLI+L+GG  G + +A    +++ AE     +   F D  +
Sbjct: 111  TVDDTPVVQRAWL-EADHEGLIVLSGGKDGDVGKALLAGNTRRAESLARWYAGHFPDAYF 169

Query: 184  VNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQR  R  D       V LA    LP+VATN   FL+ +DY+AH+V + +     +  
Sbjct: 170  LELQRTGRPGDEDHLHAAVALATELALPVVATNAVRFLAADDYDAHEVRVCIHDGYTLDD 229

Query: 243  KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RPR  T   YL++ +EM ++FSDLPEALENTVEIARRCS  L +   +LP F   E  
Sbjct: 230  PKRPRRYTNQQYLRSPAEMGALFSDLPEALENTVEIARRCSLDLTLGENVLPDFPIPEGL 289

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYH----AQDYRQRLDFELNVIARMKFSGYF 357
             I    E  L  +A+ GLE RL +  +A+G       + YRQRLD+EL +I +M F GYF
Sbjct: 290  TI----EEFLHQEALRGLEQRLEERGLAEGETEEGVRETYRQRLDWELGIINQMGFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK+++IPVGPGRGSGAGS+ AYAL ITD+DPLR+ LLFERFLNP+R+SMPD
Sbjct: 346  LIVADFIRWAKEHDIPVGPGRGSGAGSLVAYALAITDLDPLRYDLLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC ++RDEVI YV  +YG E+V+QI T G++ A+A +RDVGR L   Y  VDR+ K
Sbjct: 406  FDVDFCMEQRDEVIEYVARRYGREKVSQIATHGTMAARAVVRDVGRVLGHGYGYVDRIAK 465

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+P +P   ++ +A   +   +     D     LL ++ KLEGL R+   HA G+VI   
Sbjct: 466  LVPFEPGMQLT-KAFELEPELKALYEKDEEAGPLLSMALKLEGLARNVGKHAGGVVIAPT 524

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QR 592
             L+   P+Y +   +   TQ++   +E+ GL+KFDFLGL+TLT++  ++  +      + 
Sbjct: 525  ALTDFSPLYCEPGGEGLATQYDKDDVEEVGLVKFDFLGLRTLTIIDWTVKAVNALREQRG 584

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D++ IP DD  T+ LL    T  +FQLES GM++ ++ +QPD  EDIIALV+L+RP
Sbjct: 585  ETPLDIARIPLDDRATFDLLKRCQTTAVFQLESRGMKELIKRLQPDSFEDIIALVALFRP 644

Query: 653  GPIDNIVV--YNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V  + +RK+G+ ++        H  ++P+LK T GVI+YQEQVMQIAQ L+GY
Sbjct: 645  GPLQSGMVDDFIDRKHGRAQVAYPTPELHHDDLEPILKPTYGVILYQEQVMQIAQALAGY 704

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL  AD+LRRAMGKK   EM KQ+E F+ GA ++G+S+  A  IF+L+ KFA YGFNKSH
Sbjct: 705  SLGAADLLRRAMGKKKAAEMAKQREIFLKGAQEHGLSEAHAGAIFDLMEKFAGYGFNKSH 764

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA++SYQTAW+K HYP  F+A+ ++ +MDN +K+  F ++ R+  + + PP VN   
Sbjct: 765  SAAYALLSYQTAWLKHHYPAPFMASVLSSDMDNTDKVVIFIEECREMGLTVRPPDVNRSG 824

Query: 826  VDFKVGDNRI-YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
              F+  D +   Y L A+KGVG +    I+E   A  PF  L+D C+RVD +K+NRRVLE
Sbjct: 825  YRFRAEDEQTIIYGLGAVKGVGQSALDAIIEERDAHGPFKDLQDLCNRVDLRKVNRRVLE 884

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE------KGTFSDK 937
            +L  +G+LD    +R   +  L      A+   +N     E++F                
Sbjct: 885  ALCRSGSLDSLIPNRATGMAWLPEALAAAEQKTRNAAAGQEDLFGLPGDGAAVAEAEEPH 944

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-------- 989
             +  + +  +   R   E+  LG + +GHP+D Y+  L  +  +   + +A         
Sbjct: 945  FSTPEQAEWDEHDRLAAEKETLGLFLTGHPIDPYEAELSHLAERRIAQVLAAAGEPGEKP 1004

Query: 990  -------IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                     G ++R+  +VVS + + T  G R+  +   +     EA  FP
Sbjct: 1005 ENGRGRRRNGPSVRVVGLVVSLRTRNTASGGRMASLVLDDRTARMEAMLFP 1055


>gi|270156895|ref|ZP_06185552.1| DNA polymerase III subunit alpha [Legionella longbeachae D-4968]
 gi|289164676|ref|YP_003454814.1| DNA polymerase III, alpha chain [Legionella longbeachae NSW150]
 gi|269988920|gb|EEZ95174.1| DNA polymerase III subunit alpha [Legionella longbeachae D-4968]
 gi|288857849|emb|CBJ11696.1| DNA polymerase III, alpha chain [Legionella longbeachae NSW150]
          Length = 1148

 Score = 1071 bits (2769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1039 (40%), Positives = 629/1039 (60%), Gaps = 35/1039 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VH+ +SL++G + +  ++  + +    ++A+TD  NLF+A++  + A  AGI+P
Sbjct: 4    RFVHLRVHTEFSLVDGLVRVKPLMKALPSRGMYSVALTDHCNLFAAVKHYKSAIEAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L     ++             V S++LL   +EGY+ L  L+S+ Y   Q +   
Sbjct: 64   IIGSDLPCHNPEHP----------DRVFSLILLCLNSEGYKNLTCLISKAYQEGQYQGQP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+   W+ +  + GLI L+GG SG I +A   +  ++A  R L +++LF +R Y+ +QR 
Sbjct: 114  RVQNQWIPDY-SAGLIALSGGKSGDIGQALLADDEELATSRALYWQELFSNRFYLEIQRT 172

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
               +      +++ LA   +LPLVATN+  FL ++D+EAH+  + +     ++   R + 
Sbjct: 173  GRPEEADYNKKLIALANKLKLPLVATNDVRFLDKDDFEAHEARVCIHEGYTLADPRREQK 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YL++  EM S+F+DLP AL NTVEI++RC+  L +    LP F   +   +    
Sbjct: 233  YSAQQYLRSADEMASLFADLPSALSNTVEISKRCTVKLDLGNNYLPNFPIPDGSTV---- 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYH-----AQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            EN L + +  GLE RL Q    K          +Y +RL  EL+VI  M F+GYFLIVAD
Sbjct: 289  ENYLSHLSKTGLEERLLQIFKNKSPEDLLNTRSEYDKRLQIELDVINNMGFAGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FIQWAKNNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI YV  KYG + V+QIITFG++ AKA +RDVGR L  PY  VD+L KLIP +
Sbjct: 409  CMEGRDRVIDYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                ++ +A+  +   +     +  V  L++++ KLEG+ R+A  HA G+VI    L+  
Sbjct: 469  LGITLN-KALEQEEELKRRYTEEEEVKELIDLALKLEGITRNAGKHAGGVVIAPSQLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVD 597
              +Y +  S   V+QF+   +E AGL+KFDFLGL+TLT++  +L  + ++        +D
Sbjct: 528  TAIYCEEGSSQIVSQFDKDDVEAAGLVKFDFLGLRTLTIIDWALATVNRQRGREGLPPID 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +S IP DD  ++ LL    T  +FQLES GM++ +  +QPDC EDIIALV+L+RPGP+ +
Sbjct: 588  ISQIPTDDPASFDLLKACQTTAVFQLESRGMKELINRLQPDCFEDIIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  + +RK+G+  +   HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L  AD+LRR
Sbjct: 648  GMVDDFIDRKHGRAAVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRR 707

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ+E F  GA++ G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++YQ
Sbjct: 708  AMGKKKPEEMAKQREIFTQGATERGVDEKVATHIFDLMEKFAGYGFNKSHSAAYALVAYQ 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TAW+K HYP  F+AA M+ +MDN +K+  F  +     ++++PPS+N     F V D+  
Sbjct: 768  TAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLKVLPPSINHSMYHFTVVDDAT 827

Query: 836  -YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
              Y L AIKGVG +    I+EA      +  L  FC R+D +K+NRRVLE+L+ +GA D 
Sbjct: 828  IIYGLGAIKGVGESAIDCILEARDLGGSYPDLFSFCQRLDLRKVNRRVLEALIKSGAFDQ 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            +   R  L  SL+   K A+   +N+++   ++F+       ++         + + R E
Sbjct: 888  WKVERAVLTASLEKALKIAEKEHQNQSSGQFDLFSLLDDGAKEQ-EYVLCKSWSEAQRLE 946

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ VLGFY +GHP D Y+       I    +   +++   + + A VV+ ++  T++G 
Sbjct: 947  GEREVLGFYLTGHPADQYRREFGDF-IVPISQLNPSMQKKAV-ICAQVVAIRKVVTKRGK 1004

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            ++  +   +     +   F
Sbjct: 1005 KLVILGMDDSTARLDIVIF 1023


>gi|329115626|ref|ZP_08244348.1| DNA polymerase III subunit alpha [Acetobacter pomorum DM001]
 gi|326695054|gb|EGE46773.1| DNA polymerase III subunit alpha [Acetobacter pomorum DM001]
          Length = 1139

 Score = 1071 bits (2769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 487/1032 (47%), Positives = 663/1032 (64%), Gaps = 26/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VHS+YSL +GA+ + +I+        PA+ I D+ NLF ALEFSQ    +GIQP
Sbjct: 5    DFVHLRVHSAYSLSQGAIRVPDIVGLAKEMHMPAVGIADSGNLFGALEFSQYCTKSGIQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            II           + +  +   P      +VLL     G   L  L S  +         
Sbjct: 65   II--------GSQIGLPARNDKPGAPAEPVVLLAQNEAGLANLQFLSSAGFQNSDP-ADP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + L  L E   EGL++LTGG+ GP+ +      ++ AEK L    + FGDRL V L RH
Sbjct: 116  FVSLDLLCEKA-EGLLLLTGGTRGPLFQMLAEGQTEDAEKWLARVHEAFGDRLIVELHRH 174

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              G ++  E  V+ LA    LPLVATN   F + + YEA D L+ +A    +++KDR RV
Sbjct: 175  GLGVEKAVEPGVLTLADRFGLPLVATNECFFPTPKMYEAQDALLCIAQGRTMAEKDRFRV 234

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            TP+H+ K    M ++F+DLP+A +NT+EIARRC+  ++   P+LP   +         E+
Sbjct: 235  TPEHWFKPPEMMRALFADLPDACDNTLEIARRCAIKVETRKPLLPVCPKVRE---GATED 291

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR  A  GLE R   G        + Y++RL FEL++I++M F GYF+IVADFIQWAK
Sbjct: 292  ETLRAMAWEGLEHR-MSGMKLDAETVEKYKERLRFELDIISKMGFPGYFMIVADFIQWAK 350

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             + IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQDRRD
Sbjct: 351  AHGIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQDRRD 410

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV+++YG +RVAQIITFG LQA+AA+RDVGR L +PY  V+R+ +LIPN+PA PV+
Sbjct: 411  EVISYVRHEYGSDRVAQIITFGKLQARAAVRDVGRVLGLPYGMVNRVAELIPNNPAKPVT 470

Query: 489  LQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L+ AIA + + +E R  D ++ RLLEI+Q+LEGL+RHASTHAAG+VIGDRPL QLVP+YR
Sbjct: 471  LKEAIAGEPKLQEMRDNDEALRRLLEIAQQLEGLFRHASTHAAGVVIGDRPLVQLVPLYR 530

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D +SD  VTQ+NMK++E+AGL+KFDFLGL TLT+L++ +DF+ + G  VDLS IP DD +
Sbjct: 531  DPKSDTLVTQYNMKFVEQAGLVKFDFLGLTTLTILKRGVDFIRRMGKDVDLSHIPLDDPK 590

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L    T G+FQ E +GMR  L+ M+P  IED+IA V+LYRPGP+ NI  Y  RK+G
Sbjct: 591  TYEMLGRGDTAGVFQFEGAGMRDVLKQMRPTRIEDLIAAVALYRPGPMANIPDYCRRKHG 650

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E     H  I  +L+ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+ EMD 
Sbjct: 651  -EVWEPPHEEIRDILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIRSEMDH 709

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+E F  GA+K GI +  AV +F+L+AKFADYGFNKSHAAAYA +SYQTAWMK ++PV F
Sbjct: 710  QREIFTEGATKRGIDRDKAVEVFDLMAKFADYGFNKSHAAAYAFVSYQTAWMKANHPVAF 769

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAI 842
            LAA M+L  +  EK+    Q+A + +I ++PP++N    DF V     G   I Y+LAAI
Sbjct: 770  LAACMSLARERTEKLAALRQEAERMHIAVLPPNINKSEADFSVEKQPDGTYAIRYALAAI 829

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            K VG      ++E   +KPF +L DF  R+D K +NR  LE+L  AGA +C   +R ++ 
Sbjct: 830  KKVGYGAMESLVEVRGEKPFKNLADFAIRIDPKHINRMQLENLAKAGAFECIDKNRARVF 889

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            +S D I + A    +   +    +F        + + L +        R   E   +GF+
Sbjct: 890  RSADVILRRAHSQAQEAASGQIGLFGGPGEV--EPLRLVEGHDWPEFERLAMEAEAIGFH 947

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             + HPLD Y  +LR++G+    + +      G  +++A  VV K+++ TR G+++ WV  
Sbjct: 948  MTAHPLDAYGSVLRRLGVTRTSQLLTAAELGGGRVKIAGCVVDKKERPTRTGNKMAWVRL 1007

Query: 1021 SEPAKEYEANFF 1032
            S+ +   E   F
Sbjct: 1008 SDASGGCEVTVF 1019


>gi|311694160|gb|ADP97033.1| DNA polymerase III, alpha subunit [marine bacterium HP15]
          Length = 1145

 Score = 1071 bits (2769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1034 (39%), Positives = 601/1034 (58%), Gaps = 41/1034 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G + +  ++ ++A    PA+ +T+ +N+ S + F + A  AG++PIIG  L ++  D
Sbjct: 1    MVDGLVRVKPLIKRVAELGMPAVGLTEQSNMCSLVRFYKAAMGAGVKPIIGADLWLENPD 60

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
              +              I LL    +GY  L E++S  Y   Q      I   WL E   
Sbjct: 61   EPE----------NPFRITLLARDNDGYLNLTEIISLGYTEGQRFGKPIIQRKWL-EARP 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQV 200
             GLI L+G   G + +A      ++A +R   +  L+ D  Y+ LQR  R  D       
Sbjct: 110  NGLIALSGSRMGDVGKALMAGKPELARERARYWMDLYPDSYYLELQRTGRPGDEDCLHLS 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  FL  ED+EAH+  + +  S  +    R R  +   YL++  E
Sbjct: 170  VELAGALGLPVVATNDVHFLEAEDFEAHEARVCIGESRTLDDPRRDRRFSDQQYLRSADE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M+ +FSD+PEA+ENTVEIARRCS  +++    LP +   +   +    ++  R  +  GL
Sbjct: 230  MIELFSDIPEAIENTVEIARRCSVKVRMGEYFLPNYPIPDGMTM----DDYFRKVSEEGL 285

Query: 320  EVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
            E RLA    +         + Y +RL+FEL++I +M F GYFLIV DFI+WAK N +PVG
Sbjct: 286  EERLAKTLSKDDPEYDAKREAYYKRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPVG 345

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
            PGRGSGAGS+ AYA  ITD+DPL + LLFERFLNP+R+SMPDFD+DFC + RD VI Y  
Sbjct: 346  PGRGSGAGSLVAYAQLITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEGRDRVIEYTA 405

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
             KYG E V+QIITFG++ AKA +RDV R     Y   D+L K+IP +P   +  +A+  +
Sbjct: 406  QKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPFEPGMTLE-KALEQE 464

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
             +  E    D     + E++ KLEG+ R+A  HA G+VI    ++   P+Y D      V
Sbjct: 465  PQLVEFLENDEEAQEIWEMALKLEGVCRNAGKHAGGVVIAPTKITDFSPLYCDDEGGSLV 524

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYH 610
            TQF+   +E AGL+KFDFLGL+TLT+++ +L+ +  R        +D++ IP DD  ++ 
Sbjct: 525  TQFDKGDVEDAGLVKFDFLGLRTLTIIKWALNMINPRREKKGMQPLDINEIPLDDVPSFD 584

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGK 668
            +L    T  +FQLES GM+  +  +QPD +ED+IALV+L+RPGP+ + +V  + +RK+G+
Sbjct: 585  MLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPGPLQSGMVDDFIDRKHGR 644

Query: 669  EKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            + +   HP      + P+L+ T GVI+YQEQVMQIAQ+++GY+L  AD+LRRAMGKK  E
Sbjct: 645  QPMSFPHPDYQYEGLKPVLEPTYGVILYQEQVMQIAQVMAGYTLGNADMLRRAMGKKKPE 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM KQK+ F+ G  +NGI+ T+A NIF+L+ KFA YGFNKSH+AAYA++SYQT W+K HY
Sbjct: 705  EMAKQKQFFLDGCEQNGINTTLAENIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAI 842
            P EF+AA +T +M N +K+    ++ R   + ++ P V+     F V D     Y L AI
Sbjct: 765  PAEFMAAVLTADMQNTDKVVTLVEECRNMKLDLLVPDVSRSEYTFTVNDEGQIVYGLGAI 824

Query: 843  KGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KG+G    + I+E   D  PF  + DFC RVD KK+N+R +E+L+ +GA+D  G SR QL
Sbjct: 825  KGLGEGPIQSIVEGRGDGEPFQDIFDFCRRVDLKKVNKRAMEALIRSGAMDKLGASRAQL 884

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS---VENSSVRFENEQRV 958
            + S+D   + A    +N +    ++F             E  +         R + E+  
Sbjct: 885  MASIDKAVQQADQQSRNESVGMMDMFGEMLEAGDGGDPYEDVAGVREWPEKQRLKGEKDT 944

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG Y +GHP D Y+  +R+       +       +  R+A +VV+++  KTR GS + ++
Sbjct: 945  LGLYLTGHPFDEYEKEVRRFVRSSIADL--KPNKSPQRVAGLVVAQRTMKTRTGSTMCFI 1002

Query: 1019 TFSEPAKEYEANFF 1032
            T  + +   EA  F
Sbjct: 1003 TLDDRSARIEATLF 1016


>gi|56179800|gb|AAV82522.1| DNA polymerase III alpha subunit [Idiomarina loihiensis L2TR]
          Length = 1142

 Score = 1071 bits (2769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1032 (40%), Positives = 604/1032 (58%), Gaps = 39/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G   +  I + +A    PA+AITD  N    + +  KA   G++P+IGC   +    
Sbjct: 1    MIDGLAKVGPICEAVAEAGMPALAITDQMNFCGLVRYYGKAHQLGLKPLIGCDFWV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q   P   +  +  L    EGYQ++ +L+S+ YL    K    I   WL+E   
Sbjct: 57   ------QADYPESEIFRLTALAMDNEGYQQITQLISKAYLRGNIKGKPVIDKDWLKE-HN 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQV 200
            EG+I+L+G   G + +A         +  L  +++ F DR Y+ L R  R  +     + 
Sbjct: 110  EGIILLSGSRQGDVGQALIKGHDSQLDAALDFYQQYFPDRYYLELVRTGRPQEENYLHKA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V LA    LP+VATN  +FL EED++AH++ +A+     +  K RP+  +P  YL++  E
Sbjct: 170  VALAGETGLPVVATNEVVFLKEEDFDAHEIRVAIHDGYQLEDKRRPKKYSPQQYLRSSEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEA+ENTVEIA+RC+  +++    LP+F   +        E  L   +  GL
Sbjct: 230  MSELFSDIPEAIENTVEIAKRCNVTVRLGEYFLPKFPTGDL-----TTEEFLIKVSEEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL      A  +     +Y +RL  EL VI  M F GYFLIV +FIQW+K N IPVGP
Sbjct: 285  EERLEFLFPDAEEREQKRPEYDERLKRELGVINDMGFPGYFLIVMEFIQWSKDNGIPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC DRRDEVI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG E V+QIITFG++ AKAA+RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  LYGREAVSQIITFGTMAAKAAIRDVGRVLAHPYGFVDRISKLIPGDPGMTL-AKAFEIEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +   A   D  V  ++++++ LEG+ R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  QLGAAYDQDEEVKAIIDMARILEGVTRNAGKHAGGVVISPTKITDFSPLYCDDEGNNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++Q ++D + +R        +D++ I   D   + L
Sbjct: 524  QFDKDDVESAGLVKFDFLGLRTLTIIQWAVDMVNRRHAKSGKDPIDITSIDLTDPACFKL 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM++ ++ + PD  EDIIALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LKKAETTAVFQLESRGMKELIKKLLPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDAEYQHESLQPILEPTYGVILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+E F  GA++N I   +A  IF+L+ KFA YGFNKSH+AAYA++SYQT WMKTH+P
Sbjct: 704  MAKQREIFAKGAAQNNIDPELATKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTHFP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIK 843
             EF+AA M+ +MDN +KI     +  +  + ++PP VN     F V    R+ Y + AIK
Sbjct: 764  AEFMAAVMSADMDNTDKIVTLADECERMGLDLLPPDVNKGEYKFTVDEQQRVVYGIGAIK 823

Query: 844  GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I++A  +  PF  L DFC RVD K++N+R+L+ L+ AGA+D  G  R  L+
Sbjct: 824  GVGEAPIESIIKARQEGGPFRDLFDFCCRVDLKRMNKRILQRLIRAGAMDNLGPHRASLM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLG 960
             +L+   + A+           ++F     T  + +  E  SV   + +V  E E+  LG
Sbjct: 884  ATLEKAIRQAEQHLNAEKIGQSDMFGVLT-TEPEAVEQEFVSVRKWSEAVWLEGERDTLG 942

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             Y +GHP++ ++  L+            T +  +I +A +V+  +    ++G R   VT 
Sbjct: 943  LYLTGHPINRFRAELKHYINSTLSNVTPTRKDESIAIAGLVIDVRVLTNKRGQRFAIVTL 1002

Query: 1021 SEPAKEYEANFF 1032
             +     +   F
Sbjct: 1003 DDKTARMDVRLF 1014


>gi|153956157|ref|YP_001396922.1| DNA polymerase III DnaE [Clostridium kluyveri DSM 555]
 gi|219856482|ref|YP_002473604.1| hypothetical protein CKR_3139 [Clostridium kluyveri NBRC 12016]
 gi|146349015|gb|EDK35551.1| DnaE [Clostridium kluyveri DSM 555]
 gi|219570206|dbj|BAH08190.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1158

 Score = 1071 bits (2769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1056 (35%), Positives = 593/1056 (56%), Gaps = 49/1056 (4%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            +K   +V L  H+ YSLL+ +  ++ ++ +    +  +IAITD  +++  +EF ++A A 
Sbjct: 3    DKKYKWVSLHQHTEYSLLDSSAKISELIARAKELEMDSIAITDHGSMYGCVEFYKEAKAQ 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIGC++ +  +      N G+        +VLLV   EGY+ L+++VS   +    
Sbjct: 63   GIKPIIGCEIYVSQKSMYVKQNNGENG---NYHLVLLVKNKEGYKNLMKIVSTASIEG-F 118

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R+   +L+E  +EGLI L+   SG +      ++ + A++  L ++K+F +  Y+ 
Sbjct: 119  YYKPRVDHDYLRE-HSEGLIALSACMSGEVQANILKDNIKTAKEIALFYQKIFKEGFYLE 177

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H   ++ +   +++ ++    +PLVATN+  ++ +EDY +HDVL+ +     V ++ 
Sbjct: 178  LQYHGIEEQLKINQELISMSKELNIPLVATNDVHYIRKEDYRSHDVLLCIQTGKTVDEEQ 237

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R   D  YLK+  +M  +FS +PEALENTV+IA +CSF  + H   LP+F  KE  D 
Sbjct: 238  RMRYPSDEFYLKSPEQMYEMFSHVPEALENTVKIADQCSFDYEFHNSKLPKFPLKEGIDP 297

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                   ++     GL+ R             +   RL++EL++I +M +  YFLIV DF
Sbjct: 298  Y----EYMKELCYKGLKKRYKN-------IDDNLINRLEYELDIIKKMGYVDYFLIVWDF 346

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I +A +N I  GPGRGSGAGS+ AY L IT +DP++++L+FERFLNP+R+SMPD D DFC
Sbjct: 347  ISFAVQNGIMTGPGRGSGAGSIVAYTLGITKVDPIKYNLIFERFLNPERISMPDIDSDFC 406

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR EVI YV  KYG   V+QI+TFG++ A+A +RDVGRA+  PY +VDR+ K+IP   
Sbjct: 407  YERRGEVIDYVVGKYGKNNVSQIVTFGTMAARACIRDVGRAMNYPYGEVDRIAKMIPTIL 466

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A+  +   + A   +     L+++++ LEGL RH STHAAG+VI  +PL   V
Sbjct: 467  NITID-KALEINPELKGAYEEELRTKELIDVARALEGLPRHTSTHAAGVVIASKPLVNYV 525

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+ +       VTQF M  +E+ GL+K DFLGL+TLT+L+ +L  + + +G  +DL  I 
Sbjct: 526  PLQK--NEGNIVTQFTMNTLEELGLLKMDFLGLRTLTVLRDALTMIKENKGKSIDLDNID 583

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +DD   Y ++    T+G+FQLES GM   ++ ++PD +EDIIA +SLYRPGPI  I  Y 
Sbjct: 584  YDDKAVYDMIGQGKTVGVFQLESPGMTSFMKELKPDSLEDIIAGISLYRPGPIAEIPKYI 643

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              KN   +I  + P ++ +L  T G ++YQEQVMQI + L+GYS+  +D++RRAM KK  
Sbjct: 644  KNKNSVHEINYVTPQLEHILSVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKH 703

Query: 723  EEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
              M++++  FI             G  +NGIS+  A +IF+ +  FA Y FNKSHAAAYA
Sbjct: 704  HVMEEERRNFIYGIVDENGKVEVPGCIRNGISEKAANDIFDSMIDFASYAFNKSHAAAYA 763

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            V+++QTA++  +YP EF AA +     + EK+  + + A+   I+++PPS+N     F V
Sbjct: 764  VVAFQTAYLMHYYPTEFTAAMLNSVKGDSEKVAYYIRFAKGIGIEVLPPSINESYAKFTV 823

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D RI + L+A+K VG      I+++      F  L DFCS ++ + +N+RV+ESL+ AG
Sbjct: 824  EDGRIRFGLSAVKNVGENIIDSIVKSRLKHGKFKDLVDFCSNIEIQSINKRVVESLIKAG 883

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A DCFG  R QL    + I        K       ++F+  + + S +I           
Sbjct: 884  AFDCFGKYRSQLSLVYEKIIDSVINSRKKNIKGQISLFSQIEDS-SIEIQYPSIKEFMKR 942

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-------------ATIRGNNIR 996
                 E+ + G Y SGHPLD Y+  L+        + +                 G+ + 
Sbjct: 943  DMLSMEKEMTGLYLSGHPLDEYEKTLKLQTDTKISDIITRETLEESFIEESRVRDGDKVI 1002

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  ++    +K T+    + +    +     E   F
Sbjct: 1003 IGGILSQVSRKITKNNDMMAFARLEDLYGIMEIIIF 1038


>gi|150019661|ref|YP_001311915.1| DNA polymerase III DnaE [Clostridium beijerinckii NCIMB 8052]
 gi|149906126|gb|ABR36959.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
            8052]
          Length = 1191

 Score = 1071 bits (2769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1077 (35%), Positives = 601/1077 (55%), Gaps = 67/1077 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+G+  +  ++ K       +IAITD   L+  ++F + A    I+PI
Sbjct: 6    FCHLHLHTEYSLLDGSGKIGKLMKKAKELGMKSIAITDHGVLYGLVDFYKAAKENDIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +  +         +    +   +VLLV    GY+ L+++VS   +        R
Sbjct: 66   LGCEVYVVPKSRHIKQPDKEN---STYHLVLLVKNQIGYENLMKIVSVASIEG-FYYKPR 121

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   +L++  +EGLI L+    G +       + + A++  LT+K++F    Y+ LQ H 
Sbjct: 122  IDYEYLRK-HSEGLIALSACLGGEVQSYHLKGNYEKAKETALTYKEIFNGDFYIELQNHG 180

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              ++ R   + ++L+    +PLVATN+  ++S+ED  +HDVLM +  +  +    R R  
Sbjct: 181  MEEQKRVNEENIKLSNETGIPLVATNDVHYISKEDSRSHDVLMCIQTAKTIDDPHRRRYP 240

Query: 250  PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D  YLK+  EM  +FS +PEALENT++IA  CS+  + H   LP+F  +E  D      
Sbjct: 241  SDQFYLKSADEMWDMFSYVPEALENTIKIANECSYEYKFHESKLPKFPLEEGQDPY---- 296

Query: 309  NELRNKAVAGLEVRL---------------AQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            + LR+    GL  R                 +  +A    A++Y  RL++EL VI +M +
Sbjct: 297  DYLRDTCYKGLIDRYSVFENLRNQNLDYSKIEEVVANYEEAKEYVDRLEYELQVIKQMGY 356

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFLIV DF++++ ++ IP GPGRGS AGS+ AY L IT IDP+++SL+FERFLNP+R+
Sbjct: 357  IDYFLIVWDFVRFSYESGIPTGPGRGSAAGSIVAYTLGITKIDPIKYSLIFERFLNPERV 416

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD D DFC +RR EVI YV  KYG   V+QIITFG++ A+  +RDVGRA+   Y++VD
Sbjct: 417  SMPDIDSDFCYERRQEVIDYVVEKYGASNVSQIITFGTMAARLCIRDVGRAMNYSYAEVD 476

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            R+ K+IP      +  +A+  +   + A   D  V  L+++S+ LEGL RH+STHAAG+V
Sbjct: 477  RIAKMIPTMLGITIE-KALDLNPELKLAYDTDERVKALIDVSKDLEGLPRHSSTHAAGVV 535

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
            I  +PL + VP+ +    ++ VTQF M  +E+ GL+K DFLGL+TLT++  ++  + + R
Sbjct: 536  IASKPLVEYVPLQK--NDEMIVTQFGMNTLEELGLLKMDFLGLRTLTVMNDAVKMIKENR 593

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            GV VDL  I F+D E Y+++    T G+FQLES GM   ++ ++PD  EDIIA +SLYRP
Sbjct: 594  GVDVDLDKIDFEDEEVYNMIGEGNTAGVFQLESPGMTSFMKELKPDSFEDIIAGISLYRP 653

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP+  I  Y   K   EK+  +   ++P+L  T G ++YQEQVMQ  + L+GYS+  +D+
Sbjct: 654  GPMAEIPRYIEGKKNSEKVTYLTKELEPILGVTYGCLVYQEQVMQAVRDLAGYSMGRSDM 713

Query: 713  LRRAMGKKIKEEMDKQKERFIS-----------GASKNGISKTIAVNIFELLAKFADYGF 761
            +RRAM KK  + M+++++ FI            G  +NGIS+ IA  IF+ +  FA Y F
Sbjct: 714  VRRAMSKKKHKVMEEERKNFIHGIVENDEVIVPGCVRNGISEEIANKIFDSMMDFASYAF 773

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NKSHAAAYAV+ YQTA++  +YPVE +AA +   M   EK+  +   A +  IQ++PP++
Sbjct: 774  NKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSIMGISEKVAYYIGIAEELGIQVLPPNI 833

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRR 880
            N     F V +N+I + LAAIK VGT     I++A  +   F+SL DF +++D   +N+R
Sbjct: 834  NESFSKFTVKENKIRFGLAAIKNVGTNVVASIVKAREEKGKFESLVDFINKMDPSSINKR 893

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             +E L+ AGALD F   R ++L   + +       ++   +   ++FA E+   + ++  
Sbjct: 894  AVECLIKAGALDDFDVFRSKMLAVHEKLIDNISSDKRRNIDGQISLFASEE-LKNPEVNY 952

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK----------GYEESV--- 987
                          E+ + G Y +GHPLD Y   L+                 ++S+   
Sbjct: 953  PNIKEFTKRNLLAMEKEMTGLYITGHPLDDYAQSLKMQTTNEISKIFLVQETLDDSLESD 1012

Query: 988  -----------ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                       A    + + L  ++ S  QK TR  S + ++   +     E   FP
Sbjct: 1013 MGEINMFNRQDALQDNDRVILGGILASVNQKVTRNNSIMAFLKLEDLTGTIEVIVFP 1069


>gi|320529018|ref|ZP_08030110.1| DNA polymerase III, alpha subunit [Selenomonas artemidis F0399]
 gi|320138648|gb|EFW30538.1| DNA polymerase III, alpha subunit [Selenomonas artemidis F0399]
          Length = 1130

 Score = 1071 bits (2769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1032 (36%), Positives = 594/1032 (57%), Gaps = 26/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+GA  +  ++ +       ++AITD   ++ A+ F ++A A GI P
Sbjct: 2    SFVHLHVHTEYSLLDGASRIKELVQRTKELGMDSVAITDHGVMYGAIAFYKEAMAQGIHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  Q   +   + +        ++LL     GY+ L+ LVS   +        
Sbjct: 62   IIGCEVYVAPQSRHE---RAEVDGVRYYHLILLAENEIGYRNLVRLVSLANIEG-YYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L++   EG+I L+   +G I R+      +  ++ L  +  +F  D  ++ LQ 
Sbjct: 118  RVDKDLLRQYH-EGIIALSACVAGEIPRSILRGDPERTDEILAEYVDIFGRDNFFLELQD 176

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +       +  L+  H++ LVATN+  ++  ED E HD+L+ V     ++  +R R
Sbjct: 177  HGLPEEKTVNHALRDLSKKHDIGLVATNDIHYVRAEDSEFHDILLCVQTGRTINDPNRMR 236

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + PD+YLK+ +EM ++F D P A+ENT +IA RC          LP +   E      +
Sbjct: 237  FSGPDYYLKSEAEMTALFHDYPGAVENTAKIAARCRVDFTFGELQLPFYPIPEK---FAD 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            ++  LR      L  R ++          + R RLD+EL VI  M ++ YFLIV DFI +
Sbjct: 294  DDAYLRTLCEERLPERYSE-------ITNEIRSRLDYELGVIHGMGYASYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ + + VGPGRGS AGS+ AY L IT+IDPLR++LLFERFLNP+R+SMPD DIDF    
Sbjct: 347  ARGHGVAVGPGRGSAAGSIVAYLLGITNIDPLRYALLFERFLNPERVSMPDIDIDFDDIN 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R  VI YV+ +YG + VAQI TFG++ AK A+RDVGR L+M +S+V  + KL+P++    
Sbjct: 407  RGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVGRVLEMSFSEVSNITKLVPSELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ + + FR     D SV R++++++K+EGL R+ S HAAG+VI   PL+  VP++
Sbjct: 467  ID-RALKESADFRRLYDEDESVRRVIDLARKIEGLPRNTSIHAAGVVIAKEPLTNHVPVW 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
              +     VT+F+   +E  GL+K DFLGL+TL++++ +L  +    G+ +D+  IP +D
Sbjct: 526  --ISEGTLVTEFDKDDVEALGLLKMDFLGLRTLSIIEDALKNIRTSHGIDIDIDNIPLED 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
              T  +L    T  +FQ+ES+GM   ++ +QP    D+I  V+LYRPGP+ + +V  + +
Sbjct: 584  DLTAQMLCDGDTGAVFQMESAGMTNLVKDLQPKGFVDLIPTVALYRPGPLGSGMVTDFID 643

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
              +GK+++V +HPL+ P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK  E
Sbjct: 644  GLHGKKEVVYMHPLLAPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKKKHE 703

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  QKE F++G + NGI   +A +IF+LL  FADYGFNKSH+A+Y ++++QTA++K HY
Sbjct: 704  LLMAQKESFLAGCANNGIDAPLANHIFDLLTHFADYGFNKSHSASYGLLAWQTAYLKAHY 763

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+A  +T  MD  +KI  + +   Q  I+I+PP +N+    F +    I + LAA++
Sbjct: 764  PVEFMAGVLTSIMDKTDKIPVYIRLCHQMKIRILPPDINSSAATFSIESGAIRFGLAAVR 823

Query: 844  GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      +     +  PF SL DFC+RVD + LN+R +ESL+  GA D  G  R  LL
Sbjct: 824  NVGENAIAVLEHVREEGGPFRSLVDFCTRVDLRILNKRAIESLIKCGAFDSLGIDRNHLL 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQRVLGF 961
             SL+     A   +++  +    +F  E      +I   +   +     R   E+   GF
Sbjct: 884  ASLNAAVTDAARRQRDLLSGQIGLFGDEAMAEIQQIGDFDDVPLCTPRERLTWEKEATGF 943

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y +GHPL+  +  L  +   G   +        +R+  ++ S ++  T+KG  + +    
Sbjct: 944  YITGHPLEDNQETLSHLQPIGQIAAAVRRDRQLMRVGGILTSTKRFTTKKGDTMLFADLE 1003

Query: 1022 EPAKEYEANFFP 1033
            +     E   FP
Sbjct: 1004 DFTGTLEVTVFP 1015


>gi|302134069|ref|ZP_07260059.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato
            NCPPB 1108]
          Length = 1173

 Score = 1070 bits (2768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1060 (39%), Positives = 608/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  + +   PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLAVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +R  D       V LA  H  PLVATN+  F+++ D+EAH+  + +     +    R   
Sbjct: 173  NRANDEEHLHAAVALAERHGAPLVATNDVRFINQADFEAHETRVCIGEGRALDDPRRSHN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FSDLPEALEN+VEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENSVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA               Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA  RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVGRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
             P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVDEAPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F V
Sbjct: 768  LVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              D RI Y L AIKGVG      I +A    PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  SDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KG 932
            ALD  G                +R  LL +L+   + A+   ++  + H ++F     + 
Sbjct: 888  ALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGGLFVEA 947

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  DADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 Q--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|330894609|gb|EGH27270.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. mori str.
            301020]
          Length = 1173

 Score = 1070 bits (2768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1060 (39%), Positives = 605/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL++G + +  ++  +     PA+ +TD NN+ S ++F + A  +GI+P
Sbjct: 4    SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVGVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64   ICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+ +QR 
Sbjct: 114  VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173  NRANDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233  YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308  ENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   R  +  GLE RLA               Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289  DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVD 597
             P+Y D   D  VTQF+   +E AG +KFDFLGL+TLT++  +L  + +         +D
Sbjct: 528  SPIYCDEAGDGLVTQFDKDDVEAAGRVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F V
Sbjct: 768  LVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              D RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828  SDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KG 932
            ALD  G                +R  LL +L+   + A+   ++  + H ++F     + 
Sbjct: 888  ALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFVEA 947

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +       
Sbjct: 948  DADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 Q--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|317485419|ref|ZP_07944298.1| DNA polymerase III [Bilophila wadsworthia 3_1_6]
 gi|316923378|gb|EFV44585.1| DNA polymerase III [Bilophila wadsworthia 3_1_6]
          Length = 1175

 Score = 1070 bits (2768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1044 (39%), Positives = 611/1044 (58%), Gaps = 34/1044 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YSLL+GA+ LN++  +      PA AITD  NL+ A  F     + GI+P+
Sbjct: 4    FVHLHCHTEYSLLDGAIRLNDLCARAKDFGMPAAAITDHGNLYGAAYFYTTCKSYGIKPV 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +      K +   +        ++LL    EGY  L+ LVS+ +L D      R
Sbjct: 64   IGCEVYVTKDHRDKDSEFSRVR----HHLILLAKNNEGYHNLVRLVSKGFL-DGFHYKPR 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF--------NSSQVAEKRLLTFKKLFGDRL 182
            +  + L++  +EGLI L+   +G I R             +   A ++   +  ++  R 
Sbjct: 119  VDKALLRQ-HSEGLIALSACLAGEIPRTLMGANKLITNGGTFDDAIRQTQEYMDIYDGRF 177

Query: 183  YVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +Q +   D+    +++++LA   ++PLVATN+  +L+ +D EAHDVL+ +     V+
Sbjct: 178  YLEVQANTLPDQATLNNKLLELAEHTKVPLVATNDCHYLNADDVEAHDVLLCIQTQAKVN 237

Query: 242  QKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R R    D Y K+  EM   F  +PEAL NTV IA  C   +       P +   E 
Sbjct: 238  DAKRMRFEARDLYYKSAEEMEQAFKHIPEALSNTVRIAEECHVEMDFTHHYFPVYELPEG 297

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              +      E +  A  GL+ RL           + Y  RL+ EL VI  M F GYFLIV
Sbjct: 298  MTLST----EFQRLAREGLKQRLELHPDRDTIDPKIYWDRLEMELKVICEMGFPGYFLIV 353

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI WAK N+IPVGPGRGS AGS+ A+AL IT++DPL ++L+FERFLN +R+S+PD D+
Sbjct: 354  QDFINWAKGNDIPVGPGRGSAAGSIVAWALRITNLDPLPYNLIFERFLNIERVSLPDIDV 413

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC+D+R  VI+YV  KYG + V+QI TFG ++AKA +RDVGRAL M + + DR+ KLIP
Sbjct: 414  DFCEDKRTRVIQYVSQKYGIDSVSQITTFGKMKAKAVVRDVGRALDMSFKETDRIAKLIP 473

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +D    +  +A+  +         D  + +L++IS +LEGL RHASTHAAG+V+ D+P+ 
Sbjct: 474  DDLKMTIK-KALDAEPELATLYKEDQIIRKLIDISMRLEGLSRHASTHAAGVVVSDKPMD 532

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLS 599
            + +P+YR  + +L VTQF+MK +EK GL+KFDFLGL+T+TL+  +L  +  Q     +L 
Sbjct: 533  EYLPIYRGKKGEL-VTQFDMKMVEKVGLVKFDFLGLRTMTLIDNTLKAIEEQGKKAPNLD 591

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            ++P  D +TY + +   T G+FQ+ESSGMRQ L  ++P+C EDIIA+++LYRPGP+ + +
Sbjct: 592  ILPLTDPDTYDVFSRGDTDGVFQVESSGMRQYLRMLRPNCFEDIIAMLALYRPGPLGSGM 651

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            V  +  RK+G+  +    P ++  LK+T GVI+YQEQVMQIAQ+++GY+L  AD+LRRAM
Sbjct: 652  VDEFIKRKHGEVDVTYPLPSLEGCLKDTYGVIVYQEQVMQIAQIVAGYTLGGADLLRRAM 711

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  E M K++  F+ GA KNG SK  A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA
Sbjct: 712  GKKNAEAMAKERTLFVDGAVKNGTSKEKATEIFDLMEKFAEYGFNKSHSAAYALISYHTA 771

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++KTH+ VEF+AA +T E+ N +KI K+    +  +I++  P V     +F V D  + Y
Sbjct: 772  YLKTHHKVEFMAALLTSEIGNQDKILKYIAACKDNDIEVRQPDVQVSRREFIVRDEAVVY 831

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L  IK VG    R I+ A   D PF S  D C RV  +K+ +RVLESL+  GALDCFG 
Sbjct: 832  GLGGIKNVGDEAIREIVAAREKDGPFLSFLDLCIRVSLRKVTKRVLESLIKGGALDCFGC 891

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--------TLEKFSVENS 948
            SR  ++ ++D +   AQ   K + +   ++         +            E  S  + 
Sbjct: 892  SRAAMVAAIDPVVARAQKKIKEKQSNQISLLTLSPKKIEENQASGIGFSCEEESISEWDE 951

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              +   E+  LGF+ + HPL  Y+  L ++ ++  E+         I+ A +V S ++  
Sbjct: 952  DQKLRFEKEALGFFLTSHPLQPYRHELNRLDLRPLEDCREMADKATIKCAVLVTSIREIL 1011

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
             ++G+R+ +V   +     E  FF
Sbjct: 1012 NKRGNRMAFVAVEDLTASGEVTFF 1035


>gi|167628221|ref|YP_001678720.1| DNA polymerase iii alpha subunit, putative [Heliobacterium
            modesticaldum Ice1]
 gi|167590961|gb|ABZ82709.1| DNA polymerase iii alpha subunit, putative [Heliobacterium
            modesticaldum Ice1]
          Length = 1208

 Score = 1070 bits (2767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/1071 (37%), Positives = 606/1071 (56%), Gaps = 56/1071 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS YSLL+GA  ++ ++D+ A    PA+AITD   ++  +EF +KA A G++P
Sbjct: 14   RFVHLHVHSEYSLLDGAARIDKLVDRAAELDMPALAITDHGVMYGVIEFYKKAKARGVKP 73

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +  L    Q  +       +VLL    EGY+ L  LVS+ +         
Sbjct: 74   IIGCEVYVASRTMLDRDPQKDSD---QHHLVLLAKDIEGYRNLTALVSQAHTEG-FYYKP 129

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L    ++GLI L+   +G I R    +  + A +R   ++ +FG D  Y+ LQ 
Sbjct: 130  RVDHDRLAR-HSKGLIALSACLAGEIPRLLLNSQERQARERAAFYRDIFGCDNYYIELQD 188

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +      +++LA    L LVATN+  ++  +D    DVL+ +     +   +R +
Sbjct: 189  HDIPAQKQVNRSLIRLAGELGLGLVATNDVHYVERKDAYIQDVLLCIQMGKTLQDTERMK 248

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + YLK+  EM  +F ++PEAL N++ IA  C          LP +   +     + 
Sbjct: 249  FDGAEFYLKSAREMAMLFGEVPEALFNSLAIAEACDLQFDFSKQHLPAYPIPDEPAFIQW 308

Query: 307  EENELRNK--------AVAGLEVRLAQGAIAKG-YHAQDYRQRLDFELNVIARMKFSGYF 357
                 R          A   L    +QG   +G     DYR+RL FEL  I RM F+GYF
Sbjct: 309  RREHERAPWPGLPWGDAEQYLTYLCSQGMTWRGCAKRDDYRRRLAFELQTICRMGFAGYF 368

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DF  +A++  I VGPGRGS AGS+ AY L ITDIDP+ ++LLFERFLNP+R+SMPD
Sbjct: 369  LIVQDFCAFARREGILVGPGRGSAAGSLVAYVLGITDIDPIEYNLLFERFLNPERISMPD 428

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             DIDF   RR EVI YV +KYG +RVAQIITFG++ A+AA+RDVGR L +P + VD++ K
Sbjct: 429  IDIDFDFVRRSEVIDYVVHKYGSDRVAQIITFGTMAARAAVRDVGRVLNLPLADVDKVAK 488

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
             IP +    +  +AI      R     D  +  L+E ++ +EG+ RHASTHAAG+VI   
Sbjct: 489  AIPAELGMTIE-KAIEISPELRALC-QDQRISHLVETARAIEGMPRHASTHAAGVVIAPS 546

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596
            PL   +P+ R     +  TQF    +E+ GL+K D LGLKTLTL+   +D + + RG+++
Sbjct: 547  PLIDYLPVQRGADGGV-TTQFPKDTVEEIGLLKMDLLGLKTLTLIGDVIDKIRRSRGLQL 605

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             L  +P DD +T+ LL+   +LG+FQLESSG+R  L  ++P+  +DIIALV+LYRPGP+ 
Sbjct: 606  KLKDLPLDDPKTFQLLSRADSLGVFQLESSGLRAILRELKPNSFDDIIALVALYRPGPLQ 665

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +V  +  RK+G+  +  +HP ++P+LK+T GVI+YQEQVM+IA  L+G++L EAD+LR
Sbjct: 666  SGMVDDFIRRKHGQTTVQYLHPALEPILKDTYGVILYQEQVMRIASELAGFTLGEADMLR 725

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  + +   +++F+ G + + IS+  A +IF+L+  FA YGFNKSH+AAYA+I+Y
Sbjct: 726  RAMGKKKPDVIAGLRQQFVEGCAAHHISEKTAGDIFDLMEFFAGYGFNKSHSAAYALIAY 785

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---- 830
            QTA++K +YPVEF+A  +T   D+ EK+ ++  + ++  I+++PP VN   +DF V    
Sbjct: 786  QTAYLKANYPVEFMAGLLTSVADSSEKVAQYVDECQRLGIRVLPPDVNASEIDFSVVADP 845

Query: 831  --GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
              G  +I + LAA+K VG      I+ A     PF SL+DFC+R+D+++ NRRVLESL+ 
Sbjct: 846  LTGGLQIRFGLAAVKNVGRGAIDAILLARETGGPFTSLDDFCTRIDNRQANRRVLESLIK 905

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG--------------- 932
            AGAL   G  R  LLQ LD   + A   +++      N+F                    
Sbjct: 906  AGALSSLGK-RRPLLQILDKCMEVAARRQRDLATGQMNLFDFGGFGGEGGRGEPFEAGAL 964

Query: 933  ----------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
                      +    + L + +          E+ +LG YFSGHPL+  +P L +     
Sbjct: 965  SDFSGFSSGLSAETAVPLPEIADFPHREILAMEKELLGIYFSGHPLEELRPWLEQQISMT 1024

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                        ++L  ++ + ++  T+KG  + + T  + +   +   FP
Sbjct: 1025 IARIQPDNDQQKVKLGGVIHALRRTTTKKGQLMAYFTLEDWSGGVDVLVFP 1075


>gi|322514110|ref|ZP_08067180.1| DNA-directed DNA polymerase III alpha subunit [Actinobacillus ureae
            ATCC 25976]
 gi|322120040|gb|EFX92016.1| DNA-directed DNA polymerase III alpha subunit [Actinobacillus ureae
            ATCC 25976]
          Length = 1158

 Score = 1070 bits (2767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1052 (39%), Positives = 614/1052 (58%), Gaps = 43/1052 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +TQ       FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  
Sbjct: 1    MTQQ-----RFVHLKVHSDFSMINGLAKVKPLVKTAVANNMVAMALTDFSNFCGLVKFYG 55

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            +A  +G++PIIG  + +  + + +              + LL     GY  +  L+S+ Y
Sbjct: 56   EALGSGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAY 105

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 +    +  +WL E+  EG+I+L+GG +G + +A    +   A++ +  +++ F +
Sbjct: 106  QQGYVEF-PVVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENEAEADELISFYQQYFPN 163

Query: 181  RLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y++L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  
Sbjct: 164  HYYLSLCRTGRMDEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYT 223

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +    RP+  +P  + ++  EM ++F+DLP+A+ENT++IA RC+  +++    LP F   
Sbjct: 224  LDDPKRPKKYSPQQHFRSEQEMCTLFADLPQAVENTLQIAMRCNVTVRLGEYFLPNFPTG 283

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +        E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F G
Sbjct: 284  DL-----STEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPG 338

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SM
Sbjct: 339  YFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSM 398

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFD+DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+
Sbjct: 399  PDFDVDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRI 458

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KLIP DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI 
Sbjct: 459  SKLIPPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIA 517

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--- 592
               ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR   
Sbjct: 518  PTAITDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAR 577

Query: 593  --GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+
Sbjct: 578  EGKEPVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALF 637

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            RPGP+++ +   + +RK+G E++        H  + P+L  T GVI+YQEQVMQIAQ+L+
Sbjct: 638  RPGPLESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILAPTYGVIVYQEQVMQIAQVLA 697

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GY+L  AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNK
Sbjct: 698  GYTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNK 757

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+
Sbjct: 758  SHSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNS 817

Query: 824  PCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881
                F V +     Y L AIKGVG      I+EA   D  F  L    +RVD KK+NRR 
Sbjct: 818  GKHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFYLTARVDLKKINRRT 877

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITL 940
             ESL+ +GA D  G  R  L+++L++  K +    K       ++F     T  + +   
Sbjct: 878  FESLIMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAY 937

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                  +     E E+  LG Y SGHP+  +   L         E   T RG  + +A +
Sbjct: 938  ANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGI 997

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++  +   T++GSR+G  T  + + + +   F
Sbjct: 998  IMGSRIAITKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|209964522|ref|YP_002297437.1| DNA polymerase III subunit alpha [Rhodospirillum centenum SW]
 gi|209957988|gb|ACI98624.1| DNA polymerase III alpha subunit [Rhodospirillum centenum SW]
          Length = 1165

 Score = 1070 bits (2767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 510/1047 (48%), Positives = 704/1047 (67%), Gaps = 28/1047 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F+HL+VHS+YSL EGA+ +  ++        PA+A+TDT NLF  LEF+  A  AGIQP
Sbjct: 3    DFIHLRVHSAYSLSEGAIKVKELVKLCQKQGMPAVAVTDTGNLFGCLEFAMAAADAGIQP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGCQ+ I      K    G+T  P    +VLLV + +GY+ L++LVS+ YL  +     
Sbjct: 63   IIGCQMWIRSWGPQKR-GLGRTTGPAADQLVLLVQSQQGYRNLMKLVSKAYLETEPGLLP 121

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            ++ +  L E  +EGLI LTGG  G + R         AE+ LL    LF  RLYV L RH
Sbjct: 122  QVSVDDL-EGHSEGLICLTGGPGGGVGRLLAEGQKPHAEELLLRLAALFPGRLYVELMRH 180

Query: 190  -----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                    +   E  ++ LAY H+LPLVATN+  F     ++AHDVL+ +A    + Q++
Sbjct: 181  PEGPMGQAEDRIEPDLIDLAYAHDLPLVATNDVYFADPGMHQAHDVLLCIAEGAYIMQEE 240

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R RVTP H  K+ +EM  +F+DLPEA++NTV IARRC+++ +   PILP F+  +  + Q
Sbjct: 241  RRRVTPHHCFKSAAEMRELFADLPEAVDNTVVIARRCAYMPKKVNPILPAFVPGDSKEAQ 300

Query: 305  KE-EENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGY 356
            +E E +ELR +A  GL  RL +         +        YR+RLDFELN I +MKF GY
Sbjct: 301  EELEADELRRQAHEGLTWRLEKYVFTPDQTPETRTEIEAQYRERLDFELNTIVKMKFPGY 360

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV+DFI+WAK   IPVGPGRGSGAGS+ A++L+ITD+DP+R+ LLFERFLNP+R+SMP
Sbjct: 361  FLIVSDFIKWAKGQGIPVGPGRGSGAGSLVAWSLSITDLDPIRYGLLFERFLNPERVSMP 420

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFCQDRRDEVIRYVQ KYG+++VAQIITFG LQA+A +RDVGR LQMPY QVDR+C
Sbjct: 421  DFDVDFCQDRRDEVIRYVQRKYGYDKVAQIITFGKLQARAVVRDVGRTLQMPYGQVDRIC 480

Query: 477  KLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            KLIPN+PA+PV LQ AI  +   ++ R +D +V RLL+I+ KLEGLYRHASTHAAG+VIG
Sbjct: 481  KLIPNNPANPVGLQQAIDGEPLLQDMRKSDETVGRLLDIALKLEGLYRHASTHAAGVVIG 540

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            DRPL +LVP+YRD RSD+PVTQFNMK++E AGL+KFDFLGLKTL++L+ ++D +  R V 
Sbjct: 541  DRPLDELVPLYRDPRSDMPVTQFNMKYVELAGLVKFDFLGLKTLSVLKTAVDHVRHRDVD 600

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +DL  +P  D ++Y LL    + G+FQLESSGMR  L  M+P+ IEDIIALVSLYRPGP+
Sbjct: 601  LDLLDLPMLDEKSYGLLGRAESSGVFQLESSGMRDVLRRMKPNRIEDIIALVSLYRPGPM 660

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  Y   K G+E    +HP ++P+LKET G+++YQEQVMQIAQ+L+GYSL  AD+LRR
Sbjct: 661  DNIPKYIKVKFGEEAPDYMHPSLEPILKETFGIMVYQEQVMQIAQVLAGYSLGGADLLRR 720

Query: 716  AMGKKIKEEMDKQKERFISGASKN-GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AMGKKIKEEM+K++ +FI+GA +  G+ +  +  IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 721  AMGKKIKEEMEKERAKFIAGAKEKMGVDEEHSGLIFDQVNKFAGYGFNKSHAAAYALVAY 780

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---- 830
            QTA++K ++PVEF+AA+MT ++ N +K+ +F Q+  +  ++++PP +N     F V    
Sbjct: 781  QTAYLKANFPVEFMAATMTYDLGNTDKLNQFKQELDRLRVRLLPPDINRSGERFTVEVMP 840

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             GD  + Y+LAAIKGVG      ++ E  A+ PF  + DF  RVD+  +N+R++E LV A
Sbjct: 841  NGDRAVRYALAAIKGVGLPAMEAVVAERRANGPFRDIFDFARRVDTGAINKRMMEKLVCA 900

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D     R QL   LD I ++AQ   + R +   ++F       +    L + +  + 
Sbjct: 901  GAFDALNAHRHQLFAGLDTIMRFAQSEAQQRESGMASLFGASAALKTPD--LPRIADWDP 958

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGNNIR--LAAMVVSKQ 1005
              +  +E   +GFY S HPLD Y   L ++G+  + +  A   RG + R  +A +VV++Q
Sbjct: 959  LEKLRHEFEAIGFYLSAHPLDGYGKALERLGVVRFADLAARVARGGSTRFKMAGIVVARQ 1018

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++  + G+R  +++ S+ +  +E   F
Sbjct: 1019 ERTAKSGNRFAFISMSDSSGVFEVTLF 1045


>gi|261496138|ref|ZP_05992546.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            serotype A2 str. OVINE]
 gi|261308240|gb|EEY09535.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            serotype A2 str. OVINE]
          Length = 1158

 Score = 1070 bits (2767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1043 (39%), Positives = 607/1043 (58%), Gaps = 38/1043 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VHS +S++ G   + +++    A+   A+ +TD  N    ++F  +A  AGI+P
Sbjct: 5    RFVHLKVHSDFSMINGLAKVKSLVKTAVANNMVAMGLTDFTNFCGLVKFYGEALGAGIKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  + +          + +        + LL    +GY  + +++S+ Y     +   
Sbjct: 65   IIGADVYV----------RTEAGSEDYFELTLLAKNNKGYHNITQILSKAYQQGYIEF-P 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +   WL E+  EG+I+L+GG  G + +A    + Q AE+++  +++ + +  Y+++ R 
Sbjct: 114  MVEREWLAEL-NEGIIILSGGRMGDVGKALLKENRQEAEEKVAFYQQYYPNHFYLSVCRT 172

Query: 190  RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
               D  R   Q V+ +  + +PLVA N+ +FL E+D++AH++ +A+  S  +    RP+ 
Sbjct: 173  GRADEERYIKQAVEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKK 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +P  Y +   EM  +F+DLP AL NTVEIA+RCS  +++    LP F   E        
Sbjct: 233  YSPKQYFRTEEEMCKLFADLPSALANTVEIAKRCSVTVRLGEYFLPNFPTGEL-----ST 287

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLIV +FI
Sbjct: 288  EDFLVKKSKEGLEERLEFLFPDPEERANKRSVYDERLQVELDVINQMGFPGYFLIVMEFI 347

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            QW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC 
Sbjct: 348  QWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 407

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLIP DP 
Sbjct: 408  DGRDRVIEHVAETYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPG 467

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P
Sbjct: 468  MTLE-KAFAAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSP 526

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLS 599
            +Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + +R        + + 
Sbjct: 527  LYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINERLAREGKEPIRIE 586

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I  DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+++ +
Sbjct: 587  TISLDDKKSFALLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGM 646

Query: 660  --VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
               + +RK+GKE++        H  + P+L+ T GVI+YQEQVMQIAQ L+GY+L  AD+
Sbjct: 647  VQNFIDRKHGKEEVSYPDPQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADL 706

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  EEM  Q+E F  GA   GI   +A  IF+L+ KFA YGFNKSH+AAYA++
Sbjct: 707  LRRAMGKKKPEEMAAQREVFEKGAEAKGIDGKLAGQIFDLVEKFAGYGFNKSHSAAYALV 766

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+    F V +
Sbjct: 767  SYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECMNMGLTVVPPDVNSGKHRFSVNE 826

Query: 833  NRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                 Y L AIKGVG      I+ A   +  F  L D  +RVD KK+NRR  ESL+ +GA
Sbjct: 827  KGEIVYGLGAIKGVGEGPIEAILAARQKEGKFKDLFDLTARVDLKKINRRTFESLIMSGA 886

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSS 949
             D  G  R  L+++L++  K +    K       ++F     T  + +         +  
Sbjct: 887  FDKLGPHRAALMKNLEDALKASDQHAKMEELGQSDMFGVLTETPEEVQNAYANTPKWSEQ 946

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
            V  + E+  LG Y SGHP+  +   L         E   T RG    ++ +V++ +   T
Sbjct: 947  VILDGERATLGLYLSGHPIGRFLKELSHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVT 1006

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
            ++GSRIG  T  + + + +   F
Sbjct: 1007 KRGSRIGIATIEDRSGKLDITLF 1029


>gi|119384499|ref|YP_915555.1| DNA polymerase III subunit alpha [Paracoccus denitrificans PD1222]
 gi|119374266|gb|ABL69859.1| DNA polymerase III, alpha subunit [Paracoccus denitrificans PD1222]
          Length = 1156

 Score = 1070 bits (2767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 499/1056 (47%), Positives = 679/1056 (64%), Gaps = 58/1056 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E SP F+HL+ HS +SLLEGA+ +  + D  A +  PA+A+TD+N LF+ALEFS KA  A
Sbjct: 3    ENSPRFIHLRTHSEHSLLEGAVPVKKLADLAAQNGMPAVALTDSNALFAALEFSVKAQDA 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+QPIIGCQ+ +  +                  +VLL     G+  L+EL + +YL D  
Sbjct: 63   GVQPIIGCQVTLAAE--------------ATGPVVLLAQNEAGWLNLMELSTCLYLRDD- 107

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 +    L     EGLI LTGG+ GP+ +         A          F  RLYV 
Sbjct: 108  HALPHVTPEELA-AHAEGLICLTGGAGGPLGQLVLQGRQAEARALAERLAAAFPTRLYVE 166

Query: 186  LQRHRGYDRYR-------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            LQRH   +          E  ++ +AY  +LPLVATN+  F   E ++AHD L+ ++   
Sbjct: 167  LQRHHDAEGQPVPEETGSEGGMIDIAYALDLPLVATNDVYFPKPELFDAHDALICISERA 226

Query: 239  VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q   R R+TP HY K+ +EM ++F+DLPEA+ NTVEIARRC+F ++ H PILPRF +
Sbjct: 227  YVDQTAPRRRLTPQHYFKSAAEMATLFADLPEAIRNTVEIARRCAFAVKKHKPILPRFAD 286

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E +        ELR +A  GL  RLA   I      ++Y +RL FEL +I +M F GYF
Sbjct: 287  DEVE--------ELRRQAWDGLRARLA--VIPHSATVEEYEERLRFELGIIEQMGFPGYF 336

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK++NIPVGPGRGSGAGS+ AYALTITD+DP+R+SLLFERFLNP+R+SMPD
Sbjct: 337  LIVADFIKWAKEHNIPVGPGRGSGAGSLVAYALTITDLDPIRYSLLFERFLNPERVSMPD 396

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RDVGR LQ+P+ QVDRL K
Sbjct: 397  FDIDFCMDRREEVIQYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQLPFGQVDRLSK 456

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+ +A+AD+ R REA   +  V+RLL+ + K+EGL R+ASTHAAG+VIGD
Sbjct: 457  MIPVEGVKPVSVTKALADEPRLREA-AREEVVNRLLDYAAKIEGLLRNASTHAAGVVIGD 515

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----- 591
            RPL +LVP+YRD  SD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D +       
Sbjct: 516  RPLHRLVPLYRDPASDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLINDGGRPL 575

Query: 592  -------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                         +G +  ++ IP DD  +Y L  +  T+ +FQ+ESSGM  AL  M+P 
Sbjct: 576  HVAADGRQLYEPAKGAENQINAIPLDDKPSYDLFASARTVAVFQVESSGMMDALRRMKPT 635

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG   + SIHP ID +L ETQG+I+YQEQVMQI
Sbjct: 636  CIEDIVALVALYRPGPMENIPTYCEVKNGLRPLESIHPSIDDILAETQGIIVYQEQVMQI 695

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F+ G    GI    A  +F+LL KFA+
Sbjct: 696  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFVEGCKAQGIDTKKAGEVFDLLEKFAN 755

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M  ++   +K+  + ++A +  I+ +P
Sbjct: 756  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREADRMGIETVP 815

Query: 819  PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
            P VN     F V D +I Y+L A+KGVG      I++A A +PF  + DF  RVD +++ 
Sbjct: 816  PCVNRSEALFSVKDGKILYALGALKGVGVEAMNLIVQARAGRPFADMHDFARRVDMRRVG 875

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            +R LE L  AGA D    +R ++L+SLD +  ++  V++   +   ++F   +     + 
Sbjct: 876  KRPLEMLARAGAFDALEPNRARVLKSLDGLVAWSTAVQEAAASSQSSLFGGGEDLPPPRP 935

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-R 996
                  V   + +   E   +GFY SGHPLD Y+P LR+ G++   E   A   G  + +
Sbjct: 936  V--AAPVWMPAEKLAEEHAAVGFYLSGHPLDDYQPALRRKGVQTLAEVTQAAADGALVAQ 993

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            LA  V  +Q+KK+ +G+R  +V  S+P   YE   F
Sbjct: 994  LAGTVAHRQEKKSARGTRFAFVGLSDPTGLYEVTVF 1029


>gi|167856189|ref|ZP_02478926.1| DNA polymerase III subunit alpha [Haemophilus parasuis 29755]
 gi|167852678|gb|EDS23955.1| DNA polymerase III subunit alpha [Haemophilus parasuis 29755]
          Length = 1158

 Score = 1070 bits (2767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1046 (39%), Positives = 601/1046 (57%), Gaps = 38/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S++ G   +  ++    A+   A+A+TD  N    + F  +A  +G
Sbjct: 2    SQPRFVHLKVHSDFSMINGLAKVKPLIKACVANNMVAMALTDFTNFCGLVRFYGEALGSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI+G  + +  +   +           +  + LL     GY  +  L+S+ Y     +
Sbjct: 62   VKPIVGADVMVRPEPESE----------ELYELTLLAKNNTGYHNITLLLSKAYQQGYVE 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  +WL E   +G+I+L+GG +G + +A    + Q AE+ L  +++ F +  Y++L
Sbjct: 112  F-PVVEKAWLAE-HNDGVILLSGGRNGDVGKALLKENQQEAEQLLAFYQRYFHNHYYLSL 169

Query: 187  QRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D      Q V  +    +PLVA N+ +FL ++D+EAH++ +A+  S  +    R
Sbjct: 170  CRTGRSDEEHYIQQAVTFSQKFAIPLVAVNDVMFLKQDDFEAHEIRVAIHDSFTLDDPKR 229

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   Y ++  EM  +F+DLP+A+ENT+ IA+RC+  +++    LP F   E     
Sbjct: 230  PQKYSEQQYFRSEDEMCQLFADLPQAIENTLFIAQRCNVTIRLGEYFLPNFPTGEL---- 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  KA  GLE RLA        +      Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286  -STEDFLVKKAKEGLEERLAFLFPDPDVRASKRSVYDERLQVELDVINQMGFPGYFLIVM 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 345  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLIP 
Sbjct: 405  FCMDGRDRVIEHVSETYGCQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPP 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E    D  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 465  DPGMTL-AKAFEAEPKLPELYDTDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTAITD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR        V
Sbjct: 524  FSPLYFDSYGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLEKEGKPLV 583

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD + + LL    T  +FQLES GM+  +  +QP   EDIIALV+L+RPGP++
Sbjct: 584  RIESIPLDDEKAFKLLKAAKTTAVFQLESRGMKDLISRLQPSNFEDIIALVALFRPGPLE 643

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   + +RK+GKE I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 644  SGMVQNFIDRKHGKEPIAYPDAQYQHESLQPILEPTYGIIVYQEQVMQIAQVLAGYTLGG 703

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM  Q+  F  GA K GI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 704  ADLLRRAMGKKKPEEMAAQRATFEEGAKKQGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 763

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT EMDN +KI  F  +     + ++PP +N+    F 
Sbjct: 764  ALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDINSGKHRFS 823

Query: 830  VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V +     Y L AIKGVG      ++EA   D  F  L D  +RVD +K+NRR  E L+ 
Sbjct: 824  VNEKGEIVYGLGAIKGVGEGPIDAMLEARNKDGIFKDLFDLTARVDLRKVNRRTFEGLIM 883

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946
            AGA D  G  R  L+++L++  + +    K       ++F     T  + +         
Sbjct: 884  AGAFDKLGPHRAALMKNLEDALRASDQHNKMEALGQSDMFGVLTETPEEVQNAYANTPKW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                  +NE+  LG Y SGHP+  +   L         E   T RG    +A +++  + 
Sbjct: 944  TEQTILDNEKATLGLYLSGHPVGRFLKELAHYAPNKLNEVQPTYRGQTTTVAGLIMGARI 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+KGSRIG  T  + + + +   F
Sbjct: 1004 ATTKKGSRIGIATIEDRSGKMDLTLF 1029


>gi|118443745|ref|YP_877379.1| DNA polymerase III DnaE [Clostridium novyi NT]
 gi|118134201|gb|ABK61245.1| DNA polimerase III, alpha chain [Clostridium novyi NT]
          Length = 1167

 Score = 1070 bits (2767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1066 (35%), Positives = 605/1066 (56%), Gaps = 58/1066 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL  H+ YSLL+G+  +  ++++       ++AITD   +F  ++F +KA  AG
Sbjct: 2    KGQKFVHLHTHTEYSLLDGSGKIGGLIERAKELGMDSLAITDHGTMFGCVDFYKKAKEAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG ++ +  +    M  +          +VLLV    GY+ L+++VS+  + D   
Sbjct: 62   IKPIIGSEIYVASKS---MNIKRNDRENKNHHLVLLVKNEIGYKNLMKIVSKAAI-DGFY 117

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R+   +L+E  +EGLI L+   +G +       + + A +  L +K +F D  Y+ L
Sbjct: 118  YKPRVDHEYLRE-HSEGLIALSACLAGEVSYNLLNGTKEKAREVALFYKDIFKDGFYLEL 176

Query: 187  QRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    + R ++ +++L+   ++PLVATN+  ++ +ED ++HDVL+ +     +   DR
Sbjct: 177  QYHGIDKQLRVNEMLIELSRELDIPLVATNDVHYIKKEDAKSHDVLLCIQTGKTLDDTDR 236

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R  P + YLK+  EM   FS +PEALENTV+IA  C+F    H   LP F   E     
Sbjct: 237  MRYEPQNFYLKSPEEMYDTFSYVPEALENTVKIAEECNFDYVFHESKLPNFPLPE----S 292

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K+    ++     GL+VR  +          + ++RL++EL VI +M +  YFLIV DF 
Sbjct: 293  KDHFEYMKELCYKGLKVRYPE-------ITPELKERLEYELGVIKQMGYVDYFLIVWDFF 345

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +++ +  I  GPGRGS AGS+ AY L IT IDP++++L+FERFLNP+R+SMPD D DFC 
Sbjct: 346  RFSHEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDFCY 405

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YV  KYG + V+QI+TFG++  +A +RDVGRA+   Y++VDR+ K+IP    
Sbjct: 406  ERRGEVIDYVVEKYGKDNVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTVLG 465

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  +   +EA   D  V  L+++++ LEGL RH STHAAG+VI  +PL   VP
Sbjct: 466  ITID-KALEMNPELKEAYDIDSRVKELIDVARDLEGLPRHTSTHAAGVVIASQPLVNYVP 524

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            + +    +  VTQF M  +E+ GL+K DFLGL+TLT+++ ++D + ++   ++DL  I F
Sbjct: 525  LSK--NEEAIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIDLVKKKTGTEIDLDKINF 582

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D   Y +L    T+G+FQLES+GM   ++ ++P+ +EDIIA +SLYRPGP+  I  Y  
Sbjct: 583  EDENVYAMLGKGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAEIPKYIK 642

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             KN  + I  + P ++P+L  T GV++YQEQVMQI + L+GYS+  +D++RRAM KK  +
Sbjct: 643  NKNNPKDIEYLTPKLEPILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHK 702

Query: 724  EMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             M+++++ FI             G  +NGIS+ +A  I++ +  FA Y FNKSHAAAYAV
Sbjct: 703  VMEEERKNFIYGIEDEKGNVIVPGCLRNGISEEVANKIYDQMMDFASYAFNKSHAAAYAV 762

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++Y TA++  +YP EF+AA +     N +K+  + + A+Q  I+++PP +N     F V 
Sbjct: 763  VAYYTAYLVYYYPTEFMAAILNSVRGNSDKVAAYIRAAKQMEIEVLPPKINKSFGKFTVQ 822

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            + +I + L+AIK VG     +I +   +   F+S  DFC+++ S  +N+R++ESLV AGA
Sbjct: 823  NGKIRFGLSAIKNVGENVVDNIAKVREEKGEFNSFVDFCNKISSGSINKRMVESLVKAGA 882

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSS 949
             DCFG  R Q+L   + I        K   +   ++F      F D +I        +  
Sbjct: 883  FDCFGIYRSQILAVYEKIIDSVVNQRKKNIDGQMSLFGSFDDEFKDTEIKYPAIDEFDKK 942

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---------------------- 987
             +   E+ + G Y +GHPL+ Y+ +L+        + +                      
Sbjct: 943  SKLAMEKEMTGLYLTGHPLEDYEEVLKNRTSAKTTDIIVDESLEEELIDEVTLHIEEQNS 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                G+ + +  ++ +  +K TR  S + ++T  +     E   FP
Sbjct: 1003 KIKDGDKVIIGGLITNVTRKITRTNSMMAFITLEDLYSSIEVIIFP 1048


>gi|126728427|ref|ZP_01744243.1| DNA polymerase III subunit alpha [Sagittula stellata E-37]
 gi|126711392|gb|EBA10442.1| DNA polymerase III subunit alpha [Sagittula stellata E-37]
          Length = 1166

 Score = 1070 bits (2767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 513/1056 (48%), Positives = 682/1056 (64%), Gaps = 48/1056 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL+ H+ YSLLEGAL L  +    A    PA+A+TDTNNLF+ALEFS  A  AG
Sbjct: 2    SDPRFIHLRTHTEYSLLEGALRLKKLPGLCADMGMPAVAVTDTNNLFAALEFSVGASGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +QPIIGCQ+D+           G+   P  P +VLL  T  GY+ L++L S +YL     
Sbjct: 62   VQPIIGCQIDL----RYFEQAPGERIKPPAP-VVLLAQTERGYEHLMKLNSCLYLRRDN- 115

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            +   + L  L E  +E +I L+GG  GP+ R    NS   A+  +     +F DRLYV L
Sbjct: 116  ELAHVTLDEL-EAHSEDVICLSGGPDGPVGRLLRTNSRAAAQTLMTRLHAIFEDRLYVEL 174

Query: 187  QRHRGYD-------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            QRH G D          E   V++AY   LPLVATN+  F     YEAHD ++ +A    
Sbjct: 175  QRHPGEDGTPPEAEHLTERGFVEMAYEMGLPLVATNDVYFPKSSMYEAHDAMICIAEGAY 234

Query: 240  VSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            V Q++ R R+TP HYLK   EM  +F+DLPEALENTVEIA+RC+F+     PILPRF + 
Sbjct: 235  VDQQEPRRRLTPQHYLKTPQEMAVLFADLPEALENTVEIAKRCAFMAYRRDPILPRFADD 294

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E          ELR  A  GL+ RLA   I      +DY++RLDFEL +I  M F GYFL
Sbjct: 295  EV--------TELRRMANEGLQARLA--VIPHAVSVEDYQKRLDFELGIIEGMGFPGYFL 344

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFIQWAK  +IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDF
Sbjct: 345  IVADFIQWAKDQDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDF 404

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC DRR+EVIRYVQ+KYGH+RV QIITFG+L +KAA+RD+GR LQMPY QVDRL K+
Sbjct: 405  DIDFCMDRREEVIRYVQDKYGHDRVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSKM 464

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   PVS+ QA+ D+ R  E    +  VDRLL+   ++EGL R A THAAG+VI DR
Sbjct: 465  IPVEGVKPVSIEQALRDEPRLAEEAKNEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIADR 524

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
            P  +LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G    
Sbjct: 525  PTDELVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFKSGRPLH 584

Query: 596  ----------------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
                              ++LIP DD  TY L  +  T+ +FQ+ESSGM  AL+ M+P C
Sbjct: 585  VAADGTQLYEPPEGAENQINLIPLDDKVTYKLYASAKTVAVFQVESSGMMDALKRMKPTC 644

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            IEDI+ALV+LYRPGP++NI VY   KNG  +I S+HP ID +L ETQG+I+YQEQVMQIA
Sbjct: 645  IEDIVALVALYRPGPMENIPVYCEVKNGLREITSVHPSIDHILAETQGIIVYQEQVMQIA 704

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q+++GYSL  AD+LRRAMGKKIKE MD ++ +F  GA+KNG+ K  A  +F+LL KFA+Y
Sbjct: 705  QVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEQGAAKNGVEKKKATEVFDLLEKFANY 764

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMP 818
            GFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R+   +  +P
Sbjct: 765  GFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLGLPWVP 824

Query: 819  PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
            P VN     F V + ++ Y+L A+K VG    + ++E    + F ++ DF  RVD KK+ 
Sbjct: 825  PCVNRSLATFDVVEGQLVYALGALKNVGLEAMKLVVEGRDGRAFSTVFDFARRVDLKKIG 884

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            +R LE +  AG  D    +R ++  SLD +  Y+  + + + +   ++F  E G    + 
Sbjct: 885  KRPLEMMARAGCFDVLDPNRRRIFDSLDALVAYSAAIHEQKGSAQVSLFG-EAGDDLPEP 943

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGNNI-R 996
             L   S    + R   E + +GFY SGHPLD Y P L++  +   +E +A   RG  + +
Sbjct: 944  RLSPVSDWLPAERLAEEFKAVGFYLSGHPLDDYMPALKRQDVVTLDEVMAKAERGPLVAK 1003

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            LA +V  +Q++K+ +G+R  +   S+P   YE   F
Sbjct: 1004 LAGVVAGRQERKSARGNRFAFAQLSDPTGAYEVTLF 1039


>gi|315499828|ref|YP_004088631.1| DNA polymerase iii, alpha subunit [Asticcacaulis excentricus CB 48]
 gi|315417840|gb|ADU14480.1| DNA polymerase III, alpha subunit [Asticcacaulis excentricus CB 48]
          Length = 1142

 Score = 1069 bits (2766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 517/1037 (49%), Positives = 685/1037 (66%), Gaps = 26/1037 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL+V S+YSLLEGA+   ++    A  + PAIAI D  NLF ALEFSQ     G+
Sbjct: 2    SDGFVHLRVRSAYSLLEGAIKAYDMGKLAAKAKMPAIAICDRANLFGALEFSQVCKDTGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            QPII C L +            KTP     +IVL+V   +GY  L EL S+ YL  +   
Sbjct: 62   QPIIACALPVKGIGGTLSDRWAKTP-----TIVLIVQNEQGYLNLTELSSKAYLDIEATD 116

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +    + +   EGLI+L+GG  GPI+  F  N    A   L      FGDR Y+ LQ
Sbjct: 117  EPHVLWEEVVKRA-EGLILLSGGPDGPINPLFKQNQPDEANAALKDMHAAFGDRFYIELQ 175

Query: 188  RHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            RH G           ES +VQ AY H +PLVATN++ F   + ++AH+ L+ ++ ST + 
Sbjct: 176  RHDGSPHGGIRGDSAESGLVQFAYAHGVPLVATNDAYFADRDMFKAHEALLCISDSTFMG 235

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              DR +VT DH+LK    M  +FSDLPEA +NT+EIARRC+F++    PILPRF      
Sbjct: 236  VADRRKVTKDHWLKPPLLMREVFSDLPEACDNTLEIARRCAFLVSKRDPILPRFDTGAG- 294

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E+ EL  +A  GL++RL Q  +   +  +DY  RLD E+ VI +M F GYFLIV+
Sbjct: 295  ---RSEDEELAFQAREGLKMRLQQ--VEPAFPEEDYWARLDREVGVIQKMGFPGYFLIVS 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK ++IPVGPGRGSGAGS+ A+ALTITD+DPLRF LLFERFLNP+R+SMPDFDID
Sbjct: 350  DFIKWAKAHDIPVGPGRGSGAGSLVAWALTITDLDPLRFGLLFERFLNPERVSMPDFDID 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ+RR+EVI YVQ KYG ERVAQIITFG+LQA+A LRD GR +Q+P  QVDRLCK++PN
Sbjct: 410  FCQERREEVITYVQEKYGRERVAQIITFGTLQARAVLRDTGRVMQLPLGQVDRLCKMVPN 469

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+P +L QA+  + R REAR  + SV +LL+ + KLEGLYR+ASTHAAGIVIGDR L+
Sbjct: 470  NPANPTTLAQAVEIEPRLREARDEEESVAKLLDTALKLEGLYRNASTHAAGIVIGDRSLT 529

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVP+YRD RSD+P TQFNMKW+E AGL+KFDFLGLKTLT L ++  +L +RG++VD S 
Sbjct: 530  ELVPLYRDPRSDIPATQFNMKWVESAGLVKFDFLGLKTLTTLNRAWHYLKKRGLEVDFST 589

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY LL +  ++G+FQLES GMR  L  M+   IE+I AL+SLYRPGP+DNI  
Sbjct: 590  LPLDDKITYELLASGQSIGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDNIDT 649

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y +RK G+  I  +HP ++P+L+ET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 650  YVDRKFGRADIDMLHPSLEPVLRETYGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGKK 709

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             KEEMD QK RFISGA + G+ +  + +IFEL+ KFA YGFNKSHAAAYA ISYQT W+K
Sbjct: 710  KKEEMDLQKARFISGAKEKGVPEKQSDSIFELVNKFAGYGFNKSHAAAYAFISYQTGWLK 769

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             ++PVEF AA+M+L++ N +K+  F QDARQF + I PP +N    DF V +  + Y+L 
Sbjct: 770  ANHPVEFFAANMSLDITNTDKLAVFYQDARQFGVTIRPPDINRSKADFDVENGEVLYALG 829

Query: 841  AIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AI+ VG      ++    A  PF  + DF  R+D K +N+R +E+L  AGA D    +R 
Sbjct: 830  AIRNVGLEAMHSVVAVREAGGPFKDIFDFLERIDPKAVNKRAIENLARAGAFDSIHPNRA 889

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            Q++QS D +  +AQ +   R +   ++F     +      + K S  ++    + E   +
Sbjct: 890  QIIQSADLLIAHAQSMAAERASAQVSLFGTNDSSRPRLPNIPKASGPDA---LDEELSAV 946

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNI-RLAAMVVSKQQKKTRK-GSRIG 1016
            GFY SGHPL     + ++  +  Y E++A    G    R+A +V  +Q++ + + G +  
Sbjct: 947  GFYLSGHPLQDMVDVFKRRNVTLYAEALALAQEGREAFRMAGVVRRRQERASARTGEKFA 1006

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +V  S+P+ EYE  F P
Sbjct: 1007 FVNLSDPSGEYEVMFQP 1023


>gi|255262260|ref|ZP_05341602.1| DNA polymerase III subunit alpha [Thalassiobium sp. R2A62]
 gi|255104595|gb|EET47269.1| DNA polymerase III subunit alpha [Thalassiobium sp. R2A62]
          Length = 1169

 Score = 1069 bits (2766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 498/1056 (47%), Positives = 686/1056 (64%), Gaps = 51/1056 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F+HL++H+ YSLLEGA+ +  +         PA+A+TDTNN+F ALEFS+ A  +GIQP
Sbjct: 5    RFIHLRLHTEYSLLEGAIPVKKLPQMCINADMPAVAVTDTNNMFCALEFSEGAAKSGIQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGCQ+D+          QG+   P  P +VLL     GY  L++L S  Y+ D G    
Sbjct: 65   IIGCQIDLTY----DQAEQGQREKPPAP-LVLLAQNETGYANLMKLNSCEYI-DAGGALP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            ++ L  L++  ++GLI L+GG +GP+ +         A+  +      + +RLYV LQRH
Sbjct: 119  QVSLEELEQY-SDGLICLSGGPNGPVGQFLQQGQGPKAQALMTRLAATYPNRLYVELQRH 177

Query: 190  RGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             G       ++  E+ ++ +AY   LPLVATN+  F   E YEAHD L+ +A    V Q+
Sbjct: 178  PGDGGLPDNEQRTETALIDMAYAMGLPLVATNDVYFPKPEIYEAHDALICIAEGAYVDQQ 237

Query: 244  D-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            + R R+TP HY K+  EM+++F+DLPEA+ENT+EIARRC+F      PILP+F + E + 
Sbjct: 238  EPRRRLTPQHYFKSPQEMITLFADLPEAVENTIEIARRCAFKAYKRDPILPKFADDEVE- 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                   ELR +A AGL+ RLA   I      ++Y +RLDFEL++I  M F GYFLIVAD
Sbjct: 297  -------ELRRQAHAGLKDRLA--VIPHAVTVEEYEKRLDFELDIIEGMGFPGYFLIVAD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+K N IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDIDF
Sbjct: 348  FIKWSKDNAIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDF 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVD L K+IP +
Sbjct: 408  CMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDSLSKMIPVE 467

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
               PVS+ +A+AD+ R REA   +  VDRLL   Q++EGL R+ASTHAAG+VIGDRPL  
Sbjct: 468  GVKPVSIVKALADEPRLREAAQNEEVVDRLLTYGQQVEGLLRNASTHAAGVVIGDRPLDA 527

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---------- 591
            LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + +          
Sbjct: 528  LVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLILKSNRSIHVAAD 587

Query: 592  --------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
                     G + D++ IP DD  +Y L  +  T+ +FQ+ES+GM  AL  M+PDCIEDI
Sbjct: 588  GAELYTPANGTENDINAIPLDDDASYKLYASAKTVAVFQVESTGMMDALRRMKPDCIEDI 647

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            IALV+LYRPGP++NI  +   KNG      +HP ID +L ETQG+I+YQEQVMQIAQ ++
Sbjct: 648  IALVALYRPGPMENIPKFCEVKNGLSDRDLLHPTIDHILDETQGIIVYQEQVMQIAQEMA 707

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
             YSL  AD+LRRAMGKKI+E MD +K +F+SG+ +NG+ +  A  +++LL KFA+YGFNK
Sbjct: 708  NYSLGGADLLRRAMGKKIQEAMDAEKPKFLSGSKENGVDEKKAKEVWDLLDKFANYGFNK 767

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVN 822
            SHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++   +   PP VN
Sbjct: 768  SHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLGLPYSPPCVN 827

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS----ADKPFDSLEDFCSRVDSKKLN 878
                 F V D  + Y+L A+K VG    R + +      ADKPF ++ D   RVD K++ 
Sbjct: 828  RSQATFDVVDGTLVYALGALKNVGVEAMRMMTDGRMVEGADKPFANVFDMARRVDLKRVG 887

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            +R LE L  AGA D    +R ++  SLD +  Y+  +   R +   ++F  E G    + 
Sbjct: 888  KRPLEMLARAGAFDQLDPNRRRIFDSLDALTNYSAAIHDQRGSNQVSLFG-EAGDDLPEP 946

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-ATIRGN-NIR 996
             L   +    + R   E + +GFY SGHPLD Y P L++ G    ++ +    RG   ++
Sbjct: 947  RLSPVTDWLPAERLAEEFKAIGFYLSGHPLDDYMPALKRKGALTLDDVMLKAERGACVVK 1006

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +A  V  +Q++K+ +G+R  +V  S+P  ++E   F
Sbjct: 1007 MAGTVSGRQERKSARGNRFAFVQLSDPTGQFEVTMF 1042


>gi|307822683|ref|ZP_07652914.1| DNA polymerase III, alpha subunit [Methylobacter tundripaludum SV96]
 gi|307736287|gb|EFO07133.1| DNA polymerase III, alpha subunit [Methylobacter tundripaludum SV96]
          Length = 1164

 Score = 1069 bits (2766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1047 (40%), Positives = 621/1047 (59%), Gaps = 40/1047 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+FVHL++H+ +SL++G + +  ++ ++A    PAIA+T+  NLFS ++F + A   GI+
Sbjct: 3    PAFVHLRLHTEFSLVDGIVKIKPLVKRLAELNMPAIAVTEHANLFSLVKFYKAALGQGIK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I G  + +   ++            T   + LLV+   GY  L EL+S+ Y   Q +  
Sbjct: 63   AIAGSDVLVFNPEDP----------ATPYRLTLLVNNHAGYITLTELISKAYQEGQHQGV 112

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   W+ E    GLI L+G  SG I +A    +   A++    +  LF    Y+ LQR
Sbjct: 113  PMLRQEWI-EANHNGLIALSGAMSGCIGKALLAENHDAAKRLAEFWGALFEQSFYLELQR 171

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                 +    +  V+LA    LP+VATN+  F+ ++D+ AH+V + +  S V+    RP 
Sbjct: 172  VGKPEEERYIAAAVELALATGLPVVATNDVRFVYQQDFAAHEVRVCINQSRVLDDTRRPK 231

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T   YL++  EM ++F+D+PEALENTVEIA+RC+  L +    LP F   E  ++   
Sbjct: 232  DYTDQQYLRSIEEMQALFADIPEALENTVEIAKRCNLQLTLGKNFLPDFPVPEGMNLG-- 289

Query: 307  EENELRNKAVAGLEVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                +  +++ GLE RL      G      + + Y  RLDFEL +I +M F GYF+IVAD
Sbjct: 290  --EFMAEESMKGLEERLQHYPAVGKGTDEENRRIYYDRLDFELKMITQMGFPGYFMIVAD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N IPVGPGRGSGAGS+ AYAL ITD+DP+ F LLFERFLNP+R+SMPDFD+DF
Sbjct: 348  FIQWAKNNLIPVGPGRGSGAGSLVAYALKITDLDPIEFDLLFERFLNPERVSMPDFDVDF 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRRDEVI YV   YG + VAQIIT+GS+ AKA +RDVGR L   Y  VDRL KL+P +
Sbjct: 408  CMDRRDEVIDYVARHYGRDHVAQIITYGSMAAKAVIRDVGRVLGFGYGFVDRLSKLVPFE 467

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                ++ +A+ D    ++    +  V  L++++  LEG  R+A  HA G+VI    L+  
Sbjct: 468  IGMTLT-KALKDSPELKQLYDTEEEVKALIDMALSLEGTSRNAGKHAGGVVISPTKLTDF 526

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
             P+Y D   +  VTQF+   +E  GL+KFDFLGL+TLT++  +L  +  +  +     VD
Sbjct: 527  TPLYCDQDGNNLVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWALQDINAKHKQLGKPLVD 586

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +++IP DD ++Y LLT   T  +FQLES GM++ ++ ++PDC +DIIALV+L+RPGP+++
Sbjct: 587  ITIIPRDDPDSYKLLTAAQTTAVFQLESRGMKELIKKLKPDCFDDIIALVALFRPGPLES 646

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  Y N K+G  K    HPL++P+LK T GVI+YQEQVMQIA+ ++ Y+L  AD+LRR
Sbjct: 647  GMVDDYINVKHG-AKAEYAHPLLEPILKPTNGVILYQEQVMQIAREMALYTLGGADMLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K++++F +GA +N + + IA  +F+L+ KFA YGFNKSH+AAYA+++YQ
Sbjct: 706  AMGKKKPEEMAKERDKFTAGAIENQVDEKIATYVFDLMEKFAGYGFNKSHSAAYALVAYQ 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NR 834
            TAW+K HY  EF+AA M+ +MDN +K+    ++ +Q  +++ PP++N     F V D   
Sbjct: 766  TAWLKAHYQPEFMAAVMSADMDNTDKVVILIEECKQMKLEVCPPTINVSKYKFTVNDAGH 825

Query: 835  IYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L A+KGVG       ++E  A+  F  L D C RVD +K NRRVLE+L+ AGA D 
Sbjct: 826  IVYGLGALKGVGEAAIEEMLVEREANGLFSGLYDLCKRVDLRKFNRRVLEALIRAGAFDE 885

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSV 950
            F  +R   L  L  + K A+   KN      ++F       +              + + 
Sbjct: 886  FDDNRAGHLAELPTVLKVAEQHGKNAQTGQNDLFGLAVNAENADDVDAYNTVVEPWSENE 945

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-----RGNNIRLAAMVVSKQ 1005
            R   E+ VLG + +GHP++ Y+  LR+      E  +A +     R    R A +VV  +
Sbjct: 946  RLAAEKLVLGLFLTGHPINQYEAELRQFTNGTIESLLANVERSKSRKMEARTAGLVVEVR 1005

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++T+ G  +G+ T  +     E   F
Sbjct: 1006 TRQTKNGKVMGFATIDDRTGRLEIAAF 1032


>gi|254428613|ref|ZP_05042320.1| DNA polymerase III, alpha subunit subfamily, putative [Alcanivorax
            sp. DG881]
 gi|196194782|gb|EDX89741.1| DNA polymerase III, alpha subunit subfamily, putative [Alcanivorax
            sp. DG881]
          Length = 1166

 Score = 1069 bits (2766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1057 (39%), Positives = 614/1057 (58%), Gaps = 48/1057 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL++H+ YSL++G + +  ++      Q PA+A+TD +NLF+ ++F Q A  AG
Sbjct: 2    SDPRFVHLRLHTDYSLVDGVVRVKELIKTCVNQQIPAVAVTDDSNLFALIKFYQNAMNAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+P++G  L +             T       +  LV    GYQ L  L+SR +  +Q +
Sbjct: 62   IKPLMGADLWV-----------QGTHIEEPACLSFLVLNEAGYQNLTLLISRAWQTNQDR 110

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +   W+ E+  EGLI+L+  S G + +       ++A++       ++GDR Y+ +
Sbjct: 111  GRALVKPEWVAEL-NEGLIVLSAASQGEVGQLLLAEKYELAQQYASWLASVYGDRFYLEV 169

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR  R  D       V LA    LP+VATN+  FL  ED+EAH+  + +     +    R
Sbjct: 170  QRTSRPGDEDCLHASVTLAGQLGLPVVATNDVRFLRREDFEAHESRVCIHDGNTLDDPRR 229

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  + + YLK+  EM  +F+DLPEALENTVEIARRC+  +++    LP F   +   I 
Sbjct: 230  PKKYSEEQYLKSAEEMAELFADLPEALENTVEIARRCTLDIRLGENFLPDFPIPDGMTI- 288

Query: 305  KEEENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
               E      +  GLE RL     +         +DY  RL FEL++I +M F GYFLIV
Sbjct: 289  ---EQYFEKVSSDGLEERLKVLLDKDDPEYAIKRKDYDDRLRFELDIINQMGFPGYFLIV 345

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFIQW K N +PVGPGRGSGAGS+ AYA+ ITD+DP+ + LLFERFLNP+R+SMPDFD+
Sbjct: 346  ADFIQWGKDNEVPVGPGRGSGAGSLVAYAMKITDLDPIGYDLLFERFLNPERVSMPDFDV 405

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD VI YV +KYG + V+QIITFG++ AKA +RDV R    PY   DRL K+IP
Sbjct: 406  DFCMEKRDRVINYVADKYGRDAVSQIITFGTMAAKAVVRDVARVQGKPYGLADRLSKMIP 465

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIG 535
              P   ++ +A+  +   RE   +D + D+     ++E++ KLEGL R+   HA G+VI 
Sbjct: 466  GIPGMTLT-KALEQEETLREFLESDENSDKDAANEIMEMAFKLEGLTRNVGKHAGGVVIA 524

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD--FLAQRG 593
               L+   P+Y +      VTQ++   +E AGL+KFDFLGLKTLT++  ++    + +  
Sbjct: 525  PGKLTDFAPLYCEEDGTNLVTQYDKDDVESAGLVKFDFLGLKTLTIIDWAVKAANVKRGR 584

Query: 594  VKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              +D   +  IP DD  ++ LL    T  +FQLES GM++ ++ +QPD  EDIIALV+LY
Sbjct: 585  EGLDDLVIDHIPLDDGPSFDLLKRGDTTAVFQLESQGMKELIKKLQPDVFEDIIALVALY 644

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            RPGP+++ +   + NRK+G+E +        H  ++P+LK + GVI+YQEQVMQIAQ L+
Sbjct: 645  RPGPLESGMVDNFVNRKHGREPLAYPDPQYQHEWLEPILKPSYGVILYQEQVMQIAQELA 704

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GY+L  AD+LRRAMGKK  EEM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNK
Sbjct: 705  GYTLGGADMLRRAMGKKKPEEMAKQRAIFEEGAKGKGVDPDLAMKIFDLVEKFAGYGFNK 764

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA+++YQTAW+K HYP EF+AA+++ +M N +K+  F  + +   +Q++PP VN+
Sbjct: 765  SHSAAYALVAYQTAWLKVHYPAEFMAATISADMQNTDKVVTFIDECKTMGLQVLPPDVNS 824

Query: 824  PCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRV 881
                F V       Y L AIKG+G      I+ A AD   F  L DFC R+D KK+NRR 
Sbjct: 825  CGYRFTVNPEGDIVYGLGAIKGLGEGPIDAIVSARADGGEFKDLFDFCRRIDLKKINRRS 884

Query: 882  LESLVFAGALDCFG-----YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            LE++V AG LD  G     + R QLL +L +    A    +N      ++F     + + 
Sbjct: 885  LEAMVRAGVLDKLGPKSSFHDRAQLLATLPDAIAAADQDARNEAAGIMDMFGAVDDSPAT 944

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
             +  +     N   R   E+  LG + +GHP+D Y+  +R+           T +G    
Sbjct: 945  AVEWKPARAWNDETRLNGERDTLGLFLTGHPIDQYEKEVRQFVTARINSLQPTGKGEAAT 1004

Query: 997  LAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
            +A +VV+ +  ++++ G R+ ++T  +     E + F
Sbjct: 1005 IAGLVVALRITRSKRSGDRMAFITLDDKTGRVEVSVF 1041


>gi|301063202|ref|ZP_07203753.1| putative DNA polymerase III subunit alpha [delta proteobacterium
            NaphS2]
 gi|300442697|gb|EFK06911.1| putative DNA polymerase III subunit alpha [delta proteobacterium
            NaphS2]
          Length = 1155

 Score = 1069 bits (2766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1043 (39%), Positives = 622/1043 (59%), Gaps = 27/1043 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL VH+ YSLL+GA+ ++ +L+K  A    ++AITD  N+F  ++F  +A  
Sbjct: 1    MSDLP-FVHLHVHTEYSLLDGAIRIDRMLEKAKAQGMDSVAITDHGNMFGVVDFFDRAAK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIGC++ +   D    T   +   P    +VLLV   +GY+ L  LV+   L   
Sbjct: 60   AGIKPIIGCEVYVAPGDRRDRT-PSQNGGPNAYHLVLLVMNEQGYKNLSTLVTLGNLQG- 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 R+ +S L+E   +GL+ L+   +G +           A+++      +F  DR +
Sbjct: 118  FYYHPRVDMSALREY-NQGLVALSACLAGHVPYLIRNGQMDAAKEKAREMASVFDGDRFF 176

Query: 184  VNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ ++  ++   ++ + +L+    +P+VATN+  +L+ EDYEAHDVL+ +     V +
Sbjct: 177  LELQANKMAEQKVVNRGLRELSKDLSIPMVATNDCHYLNREDYEAHDVLLCIQTGKSVDE 236

Query: 243  KDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            + R R T  + Y K R EM     D  EAL NT  +AR C + ++      P F   E  
Sbjct: 237  EKRLRFTSNEFYFKTRREMEEALPDDAEALNNTAHVARLCQYEMRFGEYKFPVFHVPE-- 294

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKG----YHAQDYRQRLDFELNVIARMKFSGYF 357
              ++   + L   +  GL  RLAQ    +G       ++Y +RL +EL +I +M F+GYF
Sbjct: 295  --KQSLNDMLMALSRKGLARRLAQKEDEEGPIGPELRREYEERLQYELEIILKMGFAGYF 352

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI++A  ++I VGPGRGS AGS+ AY L IT+I+P+++ LLFERFLNP R+SMPD
Sbjct: 353  LIVADFIEYALNHDIAVGPGRGSAAGSLVAYCLNITNIEPIKYGLLFERFLNPARISMPD 412

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             DIDFC + RD+VI+YV +KYG   V+QIITFG+++A+  +RDVGR L +P S+VDR+ K
Sbjct: 413  IDIDFCINGRDQVIQYVADKYGRNNVSQIITFGTMKARGVIRDVGRTLNVPLSEVDRIAK 472

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+P  P   +  +AI ++   +    A     +LL IS+ LEGL RHASTHA G+VI DR
Sbjct: 473  LVPEGPGVKLD-RAIREEPELKSLENAPGRSQKLLSISRSLEGLARHASTHACGVVISDR 531

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKV 596
            PL++ +P+Y+  + +  + QF M  +EK GLIKFDFLGLKTLT+L+++L  + A  G+K+
Sbjct: 532  PLTEYLPLYKGSKGE-IMAQFTMDKVEKLGLIKFDFLGLKTLTVLKEALKLIEASAGLKI 590

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL+ I  +D  TY L     T G+FQLESSGM++ L  + P+  EDIIALV+LYRPGP+ 
Sbjct: 591  DLNRISLEDKGTYQLCADGKTTGVFQLESSGMKELLRKLNPEIFEDIIALVALYRPGPLG 650

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +V  + N K+GK ++    P + P+LKET GVI+YQEQVM+IAQ+L+ Y+++EAD LR
Sbjct: 651  SNMVDDFINGKHGKIRVSYFLPQLKPILKETYGVILYQEQVMKIAQVLANYTMAEADELR 710

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +A+GKK  E M + + RFI GA +NG+S  +A  +F L+ KF  YGFNKSH+AAYA+I+Y
Sbjct: 711  KAVGKKKPEVMARHRARFIDGAKENGVSADMAEKLFGLIEKFGGYGFNKSHSAAYAMIAY 770

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K HYPV+F+ A +TL+M N +K  K   + R   IQI+PP VN    DF V +++
Sbjct: 771  QTAYLKAHYPVQFMCALLTLDMGNQDKTIKNIAECRTMGIQILPPDVNESQADFSVVEDQ 830

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + LAA+K VG      ++E       F  L DFC R++  K+NRRVLE L+  GA D 
Sbjct: 831  IRFGLAAVKNVGQKAVEMLIEERDKHGHFKGLLDFCRRMEGSKVNRRVLEGLIQCGAFDF 890

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVENSSV 950
                R +L + LD+  K              N+F      +G     + L          
Sbjct: 891  TNAFRSRLFEGLDDALKLCGARH---DPNQLNMFGSLELGEGEAGGLLELPDLPEWEEKE 947

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            +   E+  LGFY +GHPL+ ++  +++       +       + ++LA +V S + K+T+
Sbjct: 948  KLRREKEALGFYITGHPLEGFQKAIKRFATCLVNDLPTQNDKDQVKLAGVVESLKLKRTK 1007

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
            +G ++  +   +     E   FP
Sbjct: 1008 RGDKMAIMHLEDLTGSTEVVVFP 1030


>gi|310658953|ref|YP_003936674.1| DNA polymerase III dnae [Clostridium sticklandii DSM 519]
 gi|308825731|emb|CBH21769.1| DNA polymerase III DnaE [Clostridium sticklandii]
          Length = 1150

 Score = 1069 bits (2766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1055 (36%), Positives = 600/1055 (56%), Gaps = 49/1055 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++K   FVHL +H+ YSLL+G   ++ ++ +       A+AITD   +F  ++F +KA A
Sbjct: 1    MDKK--FVHLHLHTQYSLLDGFAKIDKLIQRAKDYSMDAVAITDHGVMFGVIDFYKKAKA 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIGC++    +         K        ++LL    +GY+ L++LVS  ++   
Sbjct: 59   NGIKPIIGCEVYTASRTYKDKEGIDKKSG----HLILLAENEKGYRNLVKLVSMGFVEG- 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
                 RI    L+E  +EGLI L+   +G I +       + A++  L  + +F  +  +
Sbjct: 114  FYYKPRIDYKILKE-HSEGLIGLSACLAGEIQQKLMNGQYKEAKEIALMLRDIFGENNFF 172

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ H   ++ +    + +L+    +PLVATN+  ++ ++D + HD+L+ +     ++ 
Sbjct: 173  LELQDHGIREQKKVNIFLRKLSQDTGIPLVATNDVHYVDKDDAKTHDILLCIQTGKTLAD 232

Query: 243  KDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            + +     D  Y K++SEM  +F D  +AL NT EIA RC+     +   LP +   E  
Sbjct: 233  EHKMEFETDEFYFKSQSEMYELFPDDAQALRNTWEIANRCNVDFDFNTIHLPEYSVPEN- 291

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               K     LR     GL  R               ++RLDFELNVI  M +  YFLIV 
Sbjct: 292  ---KAPSEYLRQLCQDGLVDRY-------KTIDSKLQERLDFELNVIENMGYVEYFLIVW 341

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI ++K++NI VGPGRGS AGS+ AY L ITDIDP+++ LLFERFLNP+R+SMPD DID
Sbjct: 342  DFIDFSKRSNIMVGPGRGSAAGSIVAYTLGITDIDPIKYGLLFERFLNPERVSMPDIDID 401

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++R++VI YV+ KYG + V+QIITFG+L A++++RDVGR + + YS VD++ K IP 
Sbjct: 402  FCYEKREKVIDYVREKYGSDHVSQIITFGTLGARSSIRDVGRVMGISYSDVDKVAKEIPF 461

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  +A+  +   R+    D     L+++++ +EGL RHASTHAAG+VI   P+  
Sbjct: 462  ALNMTIE-KALDLNPNLRKIYNEDEKARELIDVAKNVEGLPRHASTHAAGVVISKEPVDH 520

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600
             VP+Y   + +   TQF M  +E+ GL+K DFLGL+TLT++QK++D +   R + +D S 
Sbjct: 521  YVPLY--TQDNAVTTQFPMTTLEELGLLKMDFLGLRTLTVIQKAIDIILRTRNITIDFSN 578

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
              +DD   Y LL++  TLG+FQLESSGMRQ ++ ++P+  EDI+A +SLYRPGP+D+I +
Sbjct: 579  SDYDDKAVYELLSSGDTLGVFQLESSGMRQFMKELKPETFEDIVAGISLYRPGPMDSIPL 638

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y   KN  + +V  H  I P+L+ T+G+++YQEQVMQ+ + L+GYS   +D++RRAM KK
Sbjct: 639  YIKNKNNPDSVVYDHESIRPILEVTRGILVYQEQVMQVVRDLAGYSYGRSDLVRRAMSKK 698

Query: 721  IKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
              + M++++  F+             G  +NGI + IA  IF+ +  FA+Y FNKSHAAA
Sbjct: 699  KMDVMEEERRNFVYGKEDENGNIEINGCVRNGIPEKIANKIFDDMIDFANYAFNKSHAAA 758

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YAV++Y+TA++K +YPVEF+AA MT  M N +K+ ++ ++  +  I+++ P VN    +F
Sbjct: 759  YAVLAYETAYLKAYYPVEFMAAIMTSVMGNTDKVVEYIRECERLKIEVLKPDVNKSFTEF 818

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
             V +N I YSL A+K VG     +++    +K  +   +DF  R+D K +N+R +ESL+ 
Sbjct: 819  AVENNHIRYSLCAVKNVGVHFVENLVAEREEKGIYIDFDDFAKRLDKKDINKRTIESLIK 878

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
             GA D    +R  ++   + I        KN      ++F  +      K  + + S  N
Sbjct: 879  CGAFDELIPNRASIMAGYEKILSSISNSRKNNIEGQVSLFDTQLQN-EVKAKIIELSEFN 937

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT---------IRGNNIRLA 998
               + + E+ VLG Y SGHPL+ YK +L ++                        ++++ 
Sbjct: 938  DKEKLQMEKEVLGLYLSGHPLNEYKDMLSRITTTTTLTLREMKDNYIENQFKDNMSVKIG 997

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++  K  K T+    + ++T  +     E   FP
Sbjct: 998  GVINKKSIKSTKNKDMMAFLTLEDIYGTVEIIVFP 1032


>gi|284047929|ref|YP_003398268.1| DNA polymerase III, alpha subunit [Acidaminococcus fermentans DSM
            20731]
 gi|283952150|gb|ADB46953.1| DNA polymerase III, alpha subunit [Acidaminococcus fermentans DSM
            20731]
          Length = 1138

 Score = 1069 bits (2765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1035 (36%), Positives = 585/1035 (56%), Gaps = 29/1035 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YSLL+G+  +  ++        PA+AITD   ++  +EF Q+   AGI+PI
Sbjct: 4    FVHLHTHTQYSLLDGSCRIPELVQYAKELGMPALAITDHGVMYGVIEFYQECEKAGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ I    +L  + + ++    +  ++LL     GYQ L++LVS   +        R
Sbjct: 64   IGCEVYITSGSHLDKSLETRS---KLYHLILLAENRTGYQNLMKLVSIGEVEG-FYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            I    L+   +EGLI L+   +G + R       + AEK +L +  +F  D  Y+ +Q H
Sbjct: 120  IDKDVLRRY-SEGLICLSACIAGEVPRHILRGELETAEKTMLEYLDIFGRDHYYLEIQNH 178

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +      ++ +LA  H + LVATN+  ++ +ED    D+L+ +  +T      R R 
Sbjct: 179  GLPEEATVRQELRRLAQKHGIKLVATNDLHYIRKEDASGQDILLCIQTNTRYLDPQRMRF 238

Query: 249  TPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D +YLK+R EM  +F +  EAL+NT+EIA RC+  L+    +LP F     + +    
Sbjct: 239  NNDSYYLKSREEMEELFPEDQEALDNTLEIAERCNVQLEFGHLLLPEFPLPPGETM---- 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR     G   R  +            R+R+++EL +I +M +SGYFLIV DFI ++
Sbjct: 295  DGYLRKLCEEGFPSRYPEDDGTA-------RKRMEYELGIIRQMGYSGYFLIVWDFINYS 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++++IPVGPGRGS AGS+ AY   IT IDPL+++L+FERFLNP+R+SMPD D D C  +R
Sbjct: 348  RRHDIPVGPGRGSAAGSIVAYLTGITSIDPLKYNLIFERFLNPERVSMPDIDTDICYVKR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
              V+ Y+  KYG   VAQIITFG+L AKAA++DVGRA+ +P + V+++ KLIPN P   +
Sbjct: 408  HLVVDYLARKYGESHVAQIITFGTLAAKAAVKDVGRAMDIPLNVVNQVNKLIPNTPGTTL 467

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY- 546
               A+      RE R  DPS+ +LL+ +QK+EG+ RH STHAAG+VI    L+  VP+  
Sbjct: 468  K-GALEGSRELRELRDGDPSIAQLLDFAQKVEGMPRHTSTHAAGVVITPGELTDYVPLQI 526

Query: 547  ---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
                D   +   TQ++    E  GL+K D LGL+TLT++  +L  + +    +VD+  I 
Sbjct: 527  TSSSDDEHEYICTQYDKDRSESLGLLKMDLLGLRTLTVIDDALKMIKKNQGTEVDIRTID 586

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--V 660
              D +T  +L    T  +FQ+ES GM + ++ + P+  ED+I LV+LYRPGP+ + +   
Sbjct: 587  LHDPKTCRMLCKGDTAAVFQMESDGMTRLMKQLAPEGFEDLIPLVALYRPGPLGSGMAED 646

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   ++G+     +HPL++P++ +T GVI+YQEQVMQI   L G++L EAD+LRRAMGKK
Sbjct: 647  FIAGRHGRRTAQVLHPLMEPIVADTYGVILYQEQVMQIVSALGGFTLGEADILRRAMGKK 706

Query: 721  IKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
              + +D  KE+F+ GA K +GIS+ +   IF LL  FA YGFNKSH+AAYA+++Y TAW+
Sbjct: 707  KAKLLDSMKEKFLDGAQKLHGISRELGSEIFALLQHFAGYGFNKSHSAAYALVAYHTAWL 766

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K +YPVE++AA +   +   +K+  +    R   IQ++PP +NT    F V  + I + L
Sbjct: 767  KANYPVEYMAAFLNSIITVADKVSWYIGVCRDMGIQVLPPDINTSEAGFSVDGHTIRFGL 826

Query: 840  AAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIK VG      I+E      PF    DF  RVD  K+N+RV+E+L+  G+++ FG  R
Sbjct: 827  GAIKSVGDAAVTVILEERKKRGPFRDFFDFTRRVDLSKVNKRVVEALIKCGSMNGFGLRR 886

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             QLL  +D   + A   +++R      +F  E    ++ I +        +     E+ +
Sbjct: 887  SQLLAIMDPALEAAASEQRDRITGQLGLFGEEDIASANTIPIPNLPEIPKAEILRLEREL 946

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +GFY +GHPLD Y+  LR++             G  I +  ++   + + T+ G R+   
Sbjct: 947  IGFYVTGHPLDAYRNALRRLTPLIRCTEENYKDGERIAVGGIITDLRLRSTKNGDRMASF 1006

Query: 1019 TFSEPAKEYEANFFP 1033
               +         FP
Sbjct: 1007 VLEDLTGSLTVIAFP 1021


>gi|251771258|gb|EES51839.1| DNA polymerase III, alpha subunit [Leptospirillum ferrodiazotrophum]
          Length = 1193

 Score = 1069 bits (2764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1040 (40%), Positives = 606/1040 (58%), Gaps = 22/1040 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL+GA  +  +++K A    PA+A+TD  NLF ALEF ++A   G++P
Sbjct: 8    RFVHLHLHTQYSLLDGANKIAPLMEKCARLGMPAVAMTDHGNLFGALEFYREAQKHGVKP 67

Query: 70   IIGCQLDIDMQDNLKMT---------NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            I+GC+L +  +               + GK        + LL     GYQ L+E+VSR +
Sbjct: 68   ILGCELYVTPRSRFDREELLMPSGGPHGGKKINNASFHLTLLAENLTGYQNLLEIVSRAH 127

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-G 179
            L        R     L     EGLI L+G   G +         + A      F+ +F  
Sbjct: 128  LEG-FYYRPRADFELLYR-HREGLIALSGCLKGQVSYLLTRGERERACATADLFRNIFGP 185

Query: 180  DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             R +  LQ +   ++     +++ L+   ++P+VATN+  +L  ED   HD+L+ +    
Sbjct: 186  GRYFFELQANGLEEQRVANRELLSLSREMKIPVVATNDCHYLDREDALPHDILLCLQTGK 245

Query: 239  VVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             +   +R R   +  YLK+  E++  F ++PEA+ENT+ IA R    L +    +P +  
Sbjct: 246  TLDDPNRLRFGAEEFYLKSPDEVIEAFREIPEAVENTLAIAERIDLTLDLKKTYMPEY-V 304

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             +  +  +       +++  GLEVR  +         + YR RL+ E+ VI  M F+GYF
Sbjct: 305  PDVGETGRTINELFCDRSREGLEVRFGEKEFD-AERKELYRARLEREIAVILEMGFAGYF 363

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI+ A++  I VGPGRGS AGS+ A++L IT+IDP+ F LLFERFLNP+R+S+PD
Sbjct: 364  LIVWDFIRKAREQGIAVGPGRGSAAGSLVAWSLRITNIDPIAFGLLFERFLNPERVSLPD 423

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DFC +RR EVI YV  KYG +RV+ I TFG++ AKA++RDVGR L M YS+VDR+ K
Sbjct: 424  IDVDFCMNRRGEVIDYVMKKYGADRVSMIATFGTMGAKASIRDVGRVLGMTYSEVDRVAK 483

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP      +  +A+  +  FRE R  DP++DRL+ +S KLEG+ RHAS HAAGIVI   
Sbjct: 484  MIPTALEMTLE-KALEQNKEFRELREKDPAIDRLVSLSMKLEGITRHASIHAAGIVISQD 542

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            PLS  VP+ R    +  VTQF    +EK GL+KFDFLGL TLTL++ ++  +     + D
Sbjct: 543  PLSGHVPLMRGAGGET-VTQFTKDDVEKVGLVKFDFLGLTTLTLIEDAVRRIRVHTPEFD 601

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP DD  TY  L    TLGIFQLES GM   L  + P+  ED+IAL++LYRPGPI++
Sbjct: 602  IDRIPLDDPGTYAFLQGGKTLGIFQLESRGMTDLLVKLAPEVFEDLIALLALYRPGPINS 661

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  +  RK    +IV  HP ++P+L+ET GVI+YQEQVMQIA +L+G+SL +AD+LRR
Sbjct: 662  GMVDDFIRRKKNPREIVYEHPDLEPILRETYGVIVYQEQVMQIANVLAGFSLGDADLLRR 721

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM+K K  FI+GA +    +T A +IFEL+A FA YGFNKSH+AAYA+ISYQ
Sbjct: 722  AMGKKKPEEMEKMKGLFITGAVERKTDRTKADHIFELMAHFAGYGFNKSHSAAYALISYQ 781

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYPVEF AA +T  +D+ EKI  F   AR+ +I+++ P +N   +DF V   R 
Sbjct: 782  TAYLKAHYPVEFWAALLTNALDDTEKIGTFLAGARELDIRVLSPDINESLLDFTVLPGRT 841

Query: 836  -YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
              + L A+K VG      I+E   A  PF S  DF  R+D  K+NRRV+E+L  AGA D 
Sbjct: 842  IRFGLGAVKNVGRQAVEAILEIRAAGGPFLSFPDFMKRIDGHKVNRRVVEALAKAGAFDS 901

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
             G +R   + ++D + ++   ++K + +K   +F   +     +         +     +
Sbjct: 902  LGTTRAAAMANIDPLLEWVAGIKKPKKSKMGKLFREFEQDSEPEAPWTAVPEWDEKTLLK 961

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  LGFY S HP+  Y  I  ++      +      G+ + +  +V + ++ KT+KG 
Sbjct: 962  AEREGLGFYLSRHPMTPYMKIAEELECPTLGQLEGQAEGSTVSVFGIVSAIRELKTKKGD 1021

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
            ++  VT  +  +  E   FP
Sbjct: 1022 KMAQVTLMDFEQSLEMVLFP 1041


>gi|225376830|ref|ZP_03754051.1| hypothetical protein ROSEINA2194_02472 [Roseburia inulinivorans DSM
            16841]
 gi|225211326|gb|EEG93680.1| hypothetical protein ROSEINA2194_02472 [Roseburia inulinivorans DSM
            16841]
          Length = 1170

 Score = 1069 bits (2764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1060 (34%), Positives = 574/1060 (54%), Gaps = 53/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ +SLL+G+  +   + ++      + AITD   +F  ++F + A AAGI P
Sbjct: 2    AFTHLHVHTEFSLLDGSNKIKEYVARVKELGMNSAAITDHGVMFGVIDFYKAAKAAGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +          +          +VLL    EGYQ L+++VS+ ++ D      
Sbjct: 62   ILGCEVYVAPNSRFDR--EAAHGEDRYYHLVLLAENNEGYQNLMKIVSKGFV-DGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+ +  LQ+  + G+I L+   +G + R         A+K    ++  F     ++ LQ 
Sbjct: 119  RVDMEVLQQYHS-GIIALSACLAGEVQRYLVKGLYDEAKKVAEKYENCFGKGNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     Q+V+++    + LVATN+  +   ED EAHD+L+ +     +S ++R R
Sbjct: 178  HGIPEQQMVNPQLVRMSQETGIELVATNDVHYTYAEDAEAHDILLCIQTGKKLSDENRMR 237

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM  +FS   +A++NT +IA RC   ++     LP F   E  D    
Sbjct: 238  YEGGQYYVKSEEEMRKLFSFASQAIDNTQKIADRCHVEIEFGVTKLPHFEVPEGYD---- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GL  R            ++   +LD+ELNVI +M +  YFLIV DFI +
Sbjct: 294  SWTYLNKLCHEGLVKRYPD-------RHEELLPKLDYELNVIRKMGYVDYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ + IPVGPGRGS AGS+ +Y   IT+IDP++++LLFERFLNP+R++MPD DIDFC +R
Sbjct: 347  ARTHGIPVGPGRGSAAGSLVSYTTGITNIDPIKYNLLFERFLNPERVTMPDIDIDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG + V+QI+TFG+L AK  +RDVGR + +PYS  D + K+IPN+    
Sbjct: 407  RSEVIDYVVKKYGKDCVSQIVTFGTLAAKGVIRDVGRVMDLPYSFCDTIAKMIPNELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   R    +D +V  L+++S++LEGL RH S HAAG+VI  + + + VP+ 
Sbjct: 467  IE-KALQMNPELRGMYESDENVRTLIDMSKRLEGLPRHTSMHAAGVVISQKAMDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF------LAQRGVKVDLSL 600
            R        TQF M  IE+ GL+K DFLGL+TLT+++ + D       +      +D + 
Sbjct: 526  RAS-DGTITTQFIMTTIEELGLLKMDFLGLRTLTVIKDAADLVYKNHGIKIDVNHIDYND 584

Query: 601  I--------PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                      ++D +    + T  T G+FQLES+GM+  ++ ++P  +ED+IA +SLYRP
Sbjct: 585  HTDPDAVLIDYNDKKVLDYIGTGRTEGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRP 644

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP+D I  Y   KN ++ I      ++P+L+ T G I+YQEQVMQI Q L+GY++ +AD 
Sbjct: 645  GPMDFIPKYIKGKNERDSITYECKELEPILEPTYGCIVYQEQVMQIVQELAGYTMGQADN 704

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNG--------ISKTIAVNIFELLAKFADYGFNKS 764
            +RRAM KK +  +D +++ F+ G  + G        IS+  A  I++ +  FA Y FNKS
Sbjct: 705  IRRAMSKKKQYVIDAERQNFVYGNEEQGIKGCIANDISEQAANKIYDSMVDFAKYAFNKS 764

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAAAYAV+SYQTA+ K +YPVEF+AA MT  +DN  K+ ++    RQ  I+++PP VN  
Sbjct: 765  HAAAYAVVSYQTAYFKYYYPVEFMAALMTSVIDNTRKVSEYIFTCRQMGIKVLPPDVNEG 824

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLE 883
               F    + I Y L AIK +G      I+ E   +  + +L+ F  RV  +++N+R +E
Sbjct: 825  EGVFTAVGDNIRYGLYAIKSIGRPVVDLILQEREENGTYKTLQSFLERVSCREVNKRAVE 884

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLE 941
            +L+ AGALD    +R Q++     I       +K   +    +F    E+     +I L 
Sbjct: 885  NLIKAGALDGLDGNRQQMITVFSTIMDNLASEKKKSMSGQMTLFDLVPEEEKKDYEIRLP 944

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK-MGIKGYE-------ESVATIRGN 993
            +    +  ++   E+ VLG Y +GHPL+ Y+   RK +     +         V      
Sbjct: 945  QLEEYSKEIKLGFEKEVLGIYLTGHPLEEYEERWRKNISAVTTDFVLDEETNEVKVKDNQ 1004

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + +  M+  K  K T+    + ++T  +     E   FP
Sbjct: 1005 KVTVGGMITEKTVKYTKNNKVMAFLTLEDLVGTVEVIVFP 1044


>gi|254785234|ref|YP_003072662.1| DNA polymerase III subunit alpha [Teredinibacter turnerae T7901]
 gi|237687442|gb|ACR14706.1| DNA polymerase III, alpha subunit [Teredinibacter turnerae T7901]
          Length = 1171

 Score = 1068 bits (2763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/1052 (38%), Positives = 590/1052 (56%), Gaps = 46/1052 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL+V + +SL++  + +  +L ++ A+  PA  ITD +N F  L+F + A  +GI+P
Sbjct: 2    NFVHLKVRTEFSLVDSIIRVKPLLQRVQAEAMPACGITDLHNFFGLLKFYRAAQGSGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G              ++        P I L      GY+ +  L+SR +   Q     
Sbjct: 62   ICGADF---------RIHKAGDDDLHPPLITLYAMNLAGYKNITALISRSFQEGQSMGEP 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I  SWL E  +EG+I L+G   G I +    N    AE++L     ++ DR Y+ LQR 
Sbjct: 113  YIDESWL-EPHSEGVIALSGAKFGEIGQLLVTNKLDEAEEKLQQMMGIYRDRFYLELQRT 171

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
             R  D     + V LA   + P+VATN+  FL  + +E H+  + +     +    R  R
Sbjct: 172  GRENDELHLHRAVGLAAKLDCPVVATNDVRFLDSDQFEVHEARVCIGEGRTLDDPRRERR 231

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + + Y ++ +EM  +F+D+PEA+ENTVEIARRC+  + +    LP +   E       E
Sbjct: 232  YSDEQYFRSTAEMCELFADIPEAIENTVEIARRCNLDILLGKYFLPEYPIPEG----LTE 287

Query: 308  ENELRNKAVAGLEVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                      GL++RL +     A       + Y +RL FEL++I +M F GYFLIV DF
Sbjct: 288  NEFFEKICREGLDLRLERILDTSAPDYLERRKVYDERLKFELDIIIQMGFPGYFLIVMDF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK + IPVGPGRGSGAGS+ AY L ITD+DPL++ LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWAKDHKIPVGPGRGSGAGSLVAYVLKITDLDPLQYDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + RD+VI YV + YG + V+QIITFG++ AKA +RDV R     Y   D+L K+IP D 
Sbjct: 408  MEDRDKVIGYVADNYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPPDV 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A   +   RE    D     + +++ +LEG+ R+   HA G+VI    L    
Sbjct: 468  GMTLT-KAYEQEEILREFLQNDGDGQEIWDMALQLEGVTRNVGKHAGGVVIAPTKLIDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D      VTQF+   +E AGL+KFDFLGL+TLT++  ++  + Q+        +D+
Sbjct: 527  PLYCDDTGGGLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWAVTMIDQQRTRLGEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S IP DD  T+ +L    T  +FQLES GM+  ++ +QPD +ED+IALV+L+RPGP+ + 
Sbjct: 587  SAIPLDDPTTFDMLKKAETTAVFQLESRGMKDLIKRLQPDNLEDMIALVALFRPGPLQSG 646

Query: 659  VV--YNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V  + NRK+G+ ++        H  + P+L+ T GVI+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDDFINRKHGRAQVAYPDAKYQHTSLQPILEPTYGVIVYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  LLRRAMGKKKPEEMAKQRSIFADGAKGLGIDPDLAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQTAW+K HYP  F+AA+M+ +MD  +K+  F ++ R   + ++PP VN     F V 
Sbjct: 767  VSYQTAWLKAHYPAHFMAATMSSDMDKTDKVVTFIEECRTMKLNLLPPDVNRGEFQFTVD 826

Query: 832  DNRI-YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            ++    Y L AIKG+G      I+EA    PF  L DFC+RVD ++LN+R LE+LV +GA
Sbjct: 827  EDANIIYGLGAIKGLGEGPVESILEARKTGPFKDLFDFCARVDGRRLNKRALEALVRSGA 886

Query: 891  LDCFGY------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK-- 942
            LD  G        R  +  ++    K A+    N      ++F        D+ ++ +  
Sbjct: 887  LDNLGPGKDIDYDRAVMHIAIAEAVKAAEQKSANANAGISDLFGEVVPVSEDRQSVYQDF 946

Query: 943  --FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                  +   R   E+  LG Y +GHP+D Y   L            A        +A +
Sbjct: 947  HRVRRWSMKERLNGEKETLGLYLTGHPIDEYDKELSNFVSSRIFHLKAEKNKQ--TVAGL 1004

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            VV+ +  KT++G  + +VT  +     E   F
Sbjct: 1005 VVAFRVMKTKRGDNMAFVTLDDRTGRIEVAVF 1036


>gi|16126169|ref|NP_420733.1| DNA polymerase III subunit alpha [Caulobacter crescentus CB15]
 gi|221234940|ref|YP_002517376.1| DNA polymerase III subunit alpha [Caulobacter crescentus NA1000]
 gi|68565608|sp|Q9A700|DPO3A_CAUCR RecName: Full=DNA polymerase III subunit alpha
 gi|239977223|sp|B8GWS6|DPO3A_CAUCN RecName: Full=DNA polymerase III subunit alpha
 gi|13423381|gb|AAK23901.1| DNA polymerase III, alpha subunit [Caulobacter crescentus CB15]
 gi|220964112|gb|ACL95468.1| DNA polymerase III alpha subunit [Caulobacter crescentus NA1000]
          Length = 1143

 Score = 1068 bits (2763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 494/1029 (48%), Positives = 682/1029 (66%), Gaps = 19/1029 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+V S+YSLLEGA+  + I    A  + PA  + D  NLF ALE+S  A  AG+QP
Sbjct: 8    GFVHLRVRSAYSLLEGAIKADQIGKLAAEAKMPAAGLADRANLFGALEYSSYAKDAGVQP 67

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC + +     + +       +   P+++LL     GY  L EL S  YL        
Sbjct: 68   IIGCAIPV-----VGIGGGPTERWARAPTLMLLAQNERGYLNLSELSSIAYLDSAELPEP 122

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +  + + E  +EGLI+L+GG+ GP+D  F    +  A   L    ++FGDR YV LQRH
Sbjct: 123  VVPWAKVAE-HSEGLILLSGGTDGPVDALFAAGKTAEASAALAEMHRVFGDRFYVELQRH 181

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E  +V  AY H++PLVATN+  F     Y+AHD L+ ++    V Q +R RV
Sbjct: 182  GLPRQAAAEPGLVNWAYDHDVPLVATNDVYFAKPGFYDAHDALLCISDGAFVGQDERRRV 241

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            TP+H+ K   EM  +F+DLPEA +NT++IARRC+F++    PILP F   +     + E 
Sbjct: 242  TPEHWFKPAEEMRKLFADLPEACDNTLDIARRCAFMVHKRDPILPSFPTGDG----RNEA 297

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL ++A  GL++RL    +      ++Y +RLDFEL +I +M F GYFLIV+DFI+W K
Sbjct: 298  EELEHQAREGLKMRLE--GLTLSAPEEEYWKRLDFELGIIKKMGFPGYFLIVSDFIKWGK 355

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             + IPVGPGRGSGAGS+ A+ LTITD+DPLRF LLFERFLNP+R+SMPDFD+DFCQ+RR+
Sbjct: 356  AHGIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQERRE 415

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YVQ KYG +RVAQIITFGSLQA+A LRDVGR +Q+P   VDRLCK++PN+PA PV+
Sbjct: 416  EVISYVQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGLVDRLCKMVPNNPAAPVT 475

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L QAI  + R ++A+  D +V   L+++ +LEGL+R+ASTHAAG+VIGDRPL+QL P+Y+
Sbjct: 476  LAQAIDLEPRLKQAKKEDANVSACLDVALQLEGLFRNASTHAAGLVIGDRPLTQLTPLYK 535

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D RSDLP TQFNMKW+E AGL+KFDFLGLKTLT+L +++  L +RG ++DL  +PFDD +
Sbjct: 536  DPRSDLPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAVKHLKKRGFEIDLGKLPFDDAK 595

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY LL +  T+G+FQLES GMR  L  M+   IE+I AL+SLYRPGP+DNI  + + K G
Sbjct: 596  TYELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDNIDTFVDCKFG 655

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            ++ + ++HP ++ +LKET GVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKK KEEMD 
Sbjct: 656  RKPVDTLHPSLEAVLKETYGVIVYQEQVMQIAQILAGYSLGEADLLRRAMGKKKKEEMDL 715

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            QK RF+SGA +  + +  + +IFEL+AKFA YGFNKSHAAAYA ISYQTAW+K + PVEF
Sbjct: 716  QKIRFVSGAKEKNVPEEQSGSIFELVAKFAGYGFNKSHAAAYAFISYQTAWLKANTPVEF 775

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             AASM+L++ N +K+  F QDAR+F I +  P VN    DF+V +  + Y+L AI+ VG 
Sbjct: 776  FAASMSLDLSNTDKLAVFHQDARRFGITVRAPDVNRSGADFEVENGEVLYALGAIRNVGL 835

Query: 848  TTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               +H++   A+  PF  + DF  R+D +++N+R +E+L  AGA D    +R Q++ S D
Sbjct: 836  EAMKHLVAVRAEGGPFRDVFDFVERIDPRQVNKRAIENLARAGAFDSIHKNRAQIVASAD 895

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             +  +AQ    +R      +F  + G  + +  L K    N     + E   +GFY +GH
Sbjct: 896  VLIAHAQSCHADRQGGQGGLFGSDPG--AGRPRLSKTENWNQVDLLDEELSAVGFYLTGH 953

Query: 967  PLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            PL+    +LR+       E++A    G    R+  +V  +Q++ ++ G +  +V+ S+P 
Sbjct: 954  PLEDMVGMLRRRRTVMLAEAMAQAEAGAEAFRMCGVVRRRQERASQSGEKFAFVSLSDPT 1013

Query: 1025 KEYEANFFP 1033
             EYE  + P
Sbjct: 1014 GEYEVLYPP 1022


>gi|153941212|ref|YP_001392730.1| DNA polymerase III DnaE [Clostridium botulinum F str. Langeland]
 gi|152937108|gb|ABS42606.1| DNA polymerase III, alpha subunit [Clostridium botulinum F str.
            Langeland]
 gi|295320711|gb|ADG01089.1| DNA polymerase III, alpha subunit [Clostridium botulinum F str.
            230613]
          Length = 1185

 Score = 1068 bits (2763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1075 (35%), Positives = 603/1075 (56%), Gaps = 55/1075 (5%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q+ EK P +V L  H+ YSLL+ +  +++++ +       +IAITD   ++  ++F ++
Sbjct: 4    NQFDEKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKE 63

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   GI+PIIGC++ +  +    M  + +        +VLLV    GY+ L+E+VS   +
Sbjct: 64   AIKQGIKPIIGCEIYVASKS---MYIKQQDKENETHHLVLLVKNEIGYKNLMEIVSNASV 120

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                    R+   +L++  +EGLI L+    G +       + + A +  L +K +F + 
Sbjct: 121  EG-FYYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAGEVALIYKDIFKEG 178

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ LQ H   ++ + ++ +V+++   ++PLVATN+  ++ +EDY++HD+L+ +     V
Sbjct: 179  FYLELQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTV 238

Query: 241  SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +++R R   D  YLK+  EM   FS +PEALENTV+I+  C+F    H   LP+F  +E
Sbjct: 239  EEENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEE 298

Query: 300  CDDIQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYR-------------QRLDFE 344
              D        LR     GL +R    +  I K +   +               +RL++E
Sbjct: 299  GVDPY----EYLRKICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNYE 354

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L++I +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+F
Sbjct: 355  LSIIKQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIF 414

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNPDR+SMPD D DFC +RR EVI YV  KYG   V+QIITFG++ A+A +RDVGRA
Sbjct: 415  ERFLNPDRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDVGRA 474

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            +  PY++VDR+ K+IP      ++ +A+  +   +EA   +  V  L+++++ LEGL RH
Sbjct: 475  MNYPYAEVDRIAKMIPTVLNITIN-KALELNPELKEAYDNEERVKALIDVARALEGLPRH 533

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             STHAAG+VI  + L   VP+ +    +  VTQF M  +E+ GL+K DFLGL+TLT+++ 
Sbjct: 534  TSTHAAGVVIASQSLVNYVPLQK--NEESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRD 591

Query: 585  SLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++  + + +G+ +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +EDI
Sbjct: 592  AVRIIKENKGIDIDLDTIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDI 651

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            IA +SLYRPGP+  I  Y   KN    I      ++P+L  T   I+YQEQVMQI + L+
Sbjct: 652  IAGISLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDLA 711

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAK 755
            GYS+  +D++RRAM KK  + M++++  FI         G   NGI + +A ++F+ +  
Sbjct: 712  GYSMGRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMMD 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSHAAAYAV+ +QTA++  +YP EF+AA +     + +K+  +   A+   I+
Sbjct: 772  FASYAFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGIE 831

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDS 874
            I+ P++N    +F V DNRI + L A+K VG     +I+ +   K  F  L DF ++VD+
Sbjct: 832  IIAPNINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVDT 891

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKG 932
              +N+R++ESL+ AGA DC    R ++L   + I    Q  ++N      N+F    +  
Sbjct: 892  SIINKRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNK 951

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-- 990
              S  I        +     + E+ + G YFSGHPL+ Y+  L+        + +     
Sbjct: 952  ESSIDIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKESL 1011

Query: 991  ------------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                         G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1012 EGNLVDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|254436926|ref|ZP_05050420.1| DNA polymerase III, alpha subunit subfamily, putative [Octadecabacter
            antarcticus 307]
 gi|198252372|gb|EDY76686.1| DNA polymerase III, alpha subunit subfamily, putative [Octadecabacter
            antarcticus 307]
          Length = 1172

 Score = 1068 bits (2762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 500/1057 (47%), Positives = 677/1057 (64%), Gaps = 47/1057 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+ H+ YSLLEGA+ +  I         PA+A+TDTNNLF ALEFS+ A  AG+Q
Sbjct: 4    PRFIHLRTHTEYSLLEGAVPVKKICALAEKFDMPAVAVTDTNNLFCALEFSEYAAKAGVQ 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGCQ+D+ +  +         P P  P IVLL     GY  L++L S  YL   G Q 
Sbjct: 64   PIIGCQIDLGLSADEPAQRNHTRPEPPAP-IVLLAQNEAGYMNLMKLNSCAYLDADG-QL 121

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             +I +  L    + G+I L+GG  GP+ R         AE  +     +F DRLYV LQR
Sbjct: 122  PQISIDDLAMY-SGGVICLSGGPDGPVGRLLRAGQRPAAEALMAQLAAIFPDRLYVELQR 180

Query: 189  HR------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            H         +   E   V++AY  +LPLVATN+  F     YEAHD L+ +A    V Q
Sbjct: 181  HPVDGGLPEAEHLSEQGHVEMAYAMDLPLVATNDVYFPKTSIYEAHDALICIADGAYVDQ 240

Query: 243  KD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             + R R+TP HY K++ EMV++F+DLPEA+ NTVEIA+RC+F +    PILP+F + E D
Sbjct: 241  NEPRRRLTPQHYFKSQQEMVTLFADLPEAIANTVEIAKRCAFKVYTRDPILPKFADNEID 300

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                    EL+ +A AGL  RL    I      +DY +RLDFEL +I  M F GYFLIVA
Sbjct: 301  --------ELKRQAHAGLTDRLK--VIPHAVSVEDYEKRLDFELGIIEGMGFPGYFLIVA 350

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++AK N+IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDID
Sbjct: 351  DFIKFAKDNDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDID 410

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQ+PY QVD+L K+IP 
Sbjct: 411  FCMDRREEVIRYVQGKYGRDKVGQIITFGALLSKAAIRDVGRVLQLPYGQVDKLSKMIPV 470

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   PVS+ +A+AD+ R RE    +  VDRLL   Q+LEGL R+ASTHAAG+VIGDR L 
Sbjct: 471  EGVKPVSIVKALADEPRLREMAKNEEVVDRLLTYGQQLEGLLRNASTHAAGVVIGDRSLD 530

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ--------- 591
            +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + +         
Sbjct: 531  ELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKSGRDLHTGP 590

Query: 592  ---------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
                      G   D++ IP DD  +Y L     T+ +FQ+ESSGM  AL  M+PDCIED
Sbjct: 591  MGAELYVPATGTINDINAIPLDDEASYKLYAAAKTVAVFQVESSGMMDALRRMKPDCIED 650

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            IIALV+LYRPGP++NI  +   KNG  +   +HP ID +L ETQG+I+YQEQVMQIAQ +
Sbjct: 651  IIALVALYRPGPMENIPKFCEVKNGLSEREKLHPSIDHILDETQGIIVYQEQVMQIAQEM 710

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +GYSL  AD+LRRAMGKK++E MD +K +F++G+ ++G+ K  A+ +++LL KFA+YGFN
Sbjct: 711  AGYSLGGADLLRRAMGKKLQEAMDVEKPKFLAGSLEHGVDKKKAMEVWDLLDKFANYGFN 770

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821
            KSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++   +   PP V
Sbjct: 771  KSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLGLPWSPPCV 830

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK--PFDSLEDFCSRVDSKKLN 878
            NT    F V +  + Y L A+K VG      I++A  A+   PF +L D   RVD K++ 
Sbjct: 831  NTSLATFDVQNGTLVYGLGALKNVGVDAMGLIVDARLAEGMSPFSTLFDLARRVDIKRVG 890

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            +R LE L  AGA D    +R ++  SLD +  Y+  + + + +   ++F  E G    + 
Sbjct: 891  KRPLEMLARAGAFDVLDPNRRKVFASLDALVGYSSAIHEQKNSNQVSLFG-EAGDDLPEP 949

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK-MGIKGYEESVATIRGNNI-- 995
             L        + R   E + +GFY SGHPLD Y   L++   +   +E  A   G  +  
Sbjct: 950  RLSAVQDWLPAERLSEEFKAVGFYLSGHPLDDYMAALKRTEKVLTLDEVTAKAAGGAMVC 1009

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++A  V  +Q++K+ +G+R  +V  S+P  +YE   F
Sbjct: 1010 KMAGTVAGRQERKSARGNRFAFVQLSDPTGQYEVTMF 1046


>gi|282599926|ref|ZP_05972365.2| DNA polymerase III, alpha subunit [Providencia rustigianii DSM 4541]
 gi|282567163|gb|EFB72698.1| DNA polymerase III, alpha subunit [Providencia rustigianii DSM 4541]
          Length = 1144

 Score = 1068 bits (2762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1032 (39%), Positives = 597/1032 (57%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K+A    PA+AITD  NL   ++F   A +AG++PIIG    +    
Sbjct: 1    MIDGLAKTGPLVKKVAEMGMPALAITDFTNLCGLVKFYGAAHSAGVKPIIGADFYM---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  + +     V  + +L    EGYQ L  L+S  Y    G     I   WL +   
Sbjct: 57   ------ESEQLGDDVAHLTVLARNNEGYQNLTLLISEAYQKGYGAIGPTIHRDWLVK-HK 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + +     +  + ++ +  ++  F    Y+ L R    D        
Sbjct: 110  EGLILLSGGRKGDVGQFLLRGNQALVDECIEFYETHFPGSYYLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            ++LA    LP+VATN   F+   D++AH++ +A+     +    RP   +P  YL++  E
Sbjct: 170  IELATLRGLPVVATNEVCFIESRDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQYLRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEALEN+VEIA+RC+  +++    LP+F   +      E E+ L   +  GL
Sbjct: 230  MCELFADIPEALENSVEIAKRCNVTIRLGEYFLPKFPTGDM-----ETEDYLVMCSKKGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y +RLD ELNVI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLEFLFPDEKERAVKRIEYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL   LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLELDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLE-KAFEVEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D++ IP +D +++ +
Sbjct: 524  QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKNLEPIDIAAIPLEDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPD  ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVKWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFKDGAIKNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V D     Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  + D C+RVD KK+NRRV+E L+ AGA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARQQGGIFKEIFDLCARVDIKKINRRVMEKLIMAGAFDHLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL++  K A    K       ++F    +     + +          V  E E+  LG 
Sbjct: 884  SSLEDALKAADQHAKAEAIGQGDMFGVLAEAPEQVESSYASVPKWPEQVVLEGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP+  Y   + +       ++   T RG    +  +V+S +   T++G+RIG  T 
Sbjct: 944  YLTGHPITRYLSEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   +   F
Sbjct: 1004 DDRSGRLDIMLF 1015


>gi|254477258|ref|ZP_05090644.1| DNA polymerase III, alpha subunit subfamily, putative [Ruegeria sp.
            R11]
 gi|214031501|gb|EEB72336.1| DNA polymerase III, alpha subunit subfamily, putative [Ruegeria sp.
            R11]
          Length = 1170

 Score = 1068 bits (2762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 496/1061 (46%), Positives = 686/1061 (64%), Gaps = 51/1061 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++P F+HL+ H+ YSLLEGA+ L  + D     + PAIA+TD+NNLF+ALEFS  A  
Sbjct: 1    MTQNPRFIHLRTHTEYSLLEGAVRLKKLPDLCKKYEMPAIAVTDSNNLFAALEFSVSASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+           G+ P P  P +VLL  +  GY+ L++L S +Y+ + 
Sbjct: 61   AGVQPIMGCQVDL----RFTDPAPGERPKPPAP-LVLLAQSETGYEHLMKLNSCLYMRE- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G +   + L  L +     +I L+GG  GP+ R         AE  +   K +F DRLYV
Sbjct: 115  GSELAHVTLEELAQYAG-DVICLSGGPDGPVGRLLQMGQRSAAEALMQRLKAIFPDRLYV 173

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       ++  E   +++AY  +LPLVATN+  F + E YEAHD ++ +A   
Sbjct: 174  ELQRHPGEHGQPEAEQLTERGHIEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K++ EMV++F+DLPEALENTVEIA+RC+F+     PILP+F +
Sbjct: 234  YVDQVEPRRRLTAQHYFKSQEEMVALFADLPEALENTVEIAKRCAFMAYRRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E          ELR  A  GL+ RLA   I      ++Y++RLDFEL +I  M F GYF
Sbjct: 294  DEV--------AELRRIANEGLQQRLA--VIPHAVSVEEYQERLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S+  ++ ++ R RE    +  VDRLL+   ++EGL R A THAAG+VIGD
Sbjct: 464  LIPVEGVKPMSIADSLKEEPRLREEAENEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL  LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q G  +
Sbjct: 524  RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDL 583

Query: 597  DLSLI------------------PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
             ++                    P DD  TY L +   T+ +FQ+ES+GM  AL+ M+P 
Sbjct: 584  HIAADGTQLYDPPEGAENQINAIPLDDKVTYDLYSRAKTVAVFQVESTGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPVYCEVKNGQREITSVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++ Y+L  AD+LRRAMGKKIKE MD ++ +F  GA++NG+    A  +F+LL KFA+
Sbjct: 704  AQVMANYTLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVPAKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   +K+  + ++ ++   +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLGLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA----DKPFDSLEDFCSRVD 873
            PP VN     F V    + Y+L A+K VG    R +  A      DKPF +L DF  RVD
Sbjct: 824  PPCVNRSEATFNVVKGELVYALGALKNVGVEAMRLVTAARRESGQDKPFATLFDFARRVD 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             KK+ +R LE +V AGA D    +R ++ +SL  +  Y+  +++ + +   ++F  E G 
Sbjct: 884  LKKVGKRPLEMMVRAGAFDQLDSNRRRVFESLGALVDYSAAIQEQKNSNQVSLFG-EAGE 942

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
               +  L        + R   E + +GFY SGHPLD Y P L++  +   +E  A     
Sbjct: 943  DLPEPRLPNVPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVTAKAERG 1002

Query: 994  N--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++A +V  +Q++K+ +G+R  +   S+    YE   F
Sbjct: 1003 PFMAKMAGVVAGRQERKSARGNRFAFAQLSDTLGAYEVTLF 1043


>gi|291458628|ref|ZP_06598018.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
            str. F0262]
 gi|291419161|gb|EFE92880.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
            str. F0262]
          Length = 1188

 Score = 1068 bits (2762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1054 (35%), Positives = 590/1054 (55%), Gaps = 43/1054 (4%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            +++ SF HL VH+SYSLL+GA  +  ++ ++      A+AITD   ++  ++F ++A A 
Sbjct: 25   KENMSFTHLHVHTSYSLLDGAGKIPEMIARVKELGMDAVAITDHGVMYGVIDFYKEAKAQ 84

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI PI+GC++ +        +            +VLL    EGY  L++LV+R +     
Sbjct: 85   GIHPILGCEIYLSPASRFDKSF--GKAEARYYHLVLLAENEEGYHNLMKLVTRGFTEG-F 141

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYV 184
                R+    L+     GLI L+   +G + R    +  + A    L ++++F     ++
Sbjct: 142  YYKPRVDFELLRRYHG-GLIALSACLAGELARDLSRDQYEEARDAALRYQEIFGKGNFFL 200

Query: 185  NLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ H   ++ + +Q +++L     +P+VATN+  +   ED +AHD+L+ +     ++ +
Sbjct: 201  ELQDHGYPEQRKVNQGLLRLHEDTGIPMVATNDIHYTFREDAKAHDILLCLQTGKKLNDQ 260

Query: 244  DRPRVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            DR R     +  K+  EM  +F    EA+ NT +IA RC   ++     LP++   +   
Sbjct: 261  DRMRYPGGQFYIKSEEEMRELFPYAEEAILNTEKIAERCQVEIEFGHYHLPKYEVPDGF- 319

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                  + LR     GL  R        G  A+ YR+RL +EL+VI+ M F+ YFLIV D
Sbjct: 320  ---TPLSYLRKLCEEGLVRRY-------GEEAEHYRERLSYELSVISSMGFTEYFLIVWD 369

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I +AK + I VGPGRGS AGS+ AY++ ITDIDP+R+ LLFERFLNP+R++MPD D+DF
Sbjct: 370  YIHFAKTHGIAVGPGRGSAAGSIVAYSIGITDIDPMRYQLLFERFLNPERVTMPDIDVDF 429

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR EVI YV  KYG E+V+QIITFG+L AK  +RDVGR + +PY++ D + KLIPN+
Sbjct: 430  EYERRQEVIDYVTKKYGKEQVSQIITFGTLAAKGVVRDVGRVMDIPYAKCDMIAKLIPNE 489

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+      ++    D    R++++S++LEGL RH+STHAAG+VI    + + 
Sbjct: 490  LNMTLE-RALFGSPDLKKLYEEDEETRRIIDMSRRLEGLPRHSSTHAAGVVIAGSAVEEF 548

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601
            VP+ ++       TQF M  +E+ GL+K DFLGL+TLT++Q ++ F  +    ++DL  +
Sbjct: 549  VPLSKNT-DGAVTTQFTMTTVEELGLLKMDFLGLRTLTVIQDAIRFAEKDYGKRIDLERM 607

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             ++D + Y +++     G+FQLES GM   ++ ++P  +ED+IA VSLYRPGP+D I  Y
Sbjct: 608  DYEDPKVYEMISRGDCAGVFQLESGGMVSFMKRLRPTSLEDVIAGVSLYRPGPMDFIPKY 667

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K   E++   HP I+P+LK T G I+YQEQVMQI + L+GYS+  +D+LRRAM KK 
Sbjct: 668  IEGKKHPERVSYEHPRIEPILKSTYGCIVYQEQVMQIVRELAGYSMGRSDLLRRAMSKKK 727

Query: 722  KEEMDKQKERFISGASKN--------GISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               M+K++  F+ G  +         GIS+ +A +I++ +  FA Y FNKSHAA YA+I+
Sbjct: 728  ASVMEKERRNFVYGNPEEGIPGCLSAGISEQVANHIYDEMIDFAKYAFNKSHAACYALIA 787

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K +YP EF AA M+  MDN  K  ++ + AR   I I+PP +N     F V D 
Sbjct: 788  YQTAYLKCYYPAEFYAALMSSFMDNAGKTAEYLEFARDREIPILPPDINLAESGFSVSDA 847

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L+A+KG+G + A  I+ E      F  LEDF  R+  + +NRR +ESL+++GALD
Sbjct: 848  SIRYGLSAVKGIGRSAAEQIIEERRRGGKFRDLEDFLLRISDRGVNRRAVESLIYSGALD 907

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE---NIFAHEKGTFSD-KITLEKFSVENS 948
                +R + + +L  + +     ++N         ++   +       + T+        
Sbjct: 908  SLPGNRREKVTALPFLLESKSKEKRNAMAGQMTLADLLGEDNEEAEAFRFTMPVLPEFPK 967

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPIL-----RKMGIKGYE----ESVATIRGNNIRLAA 999
            +    NE+  LG Y SGHPLD  + +L      K G    +    E      G  + +  
Sbjct: 968  AELLRNEKDALGVYLSGHPLDSDRELLDFYVDAKAGAFRTDPESGEEGGLSEGQLVTVGG 1027

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++   +QK T+K   + ++T  +     E   FP
Sbjct: 1028 LLTEIRQKVTKKNELMAFLTLEDRQGSIEVTVFP 1061


>gi|290473672|ref|YP_003466544.1| DNA polymerase III subunit alpha [Xenorhabdus bovienii SS-2004]
 gi|289172977|emb|CBJ79748.1| DNA polymerase III, alpha subunit [Xenorhabdus bovienii SS-2004]
          Length = 1144

 Score = 1068 bits (2762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1032 (39%), Positives = 603/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G     +++ K+A    PA AITD  NL   ++F   A +AGI+PIIG    +    
Sbjct: 1    MIDGLAKTGSLIKKVAKLDMPAFAITDFTNLCGLVKFYGSAHSAGIKPIIGADFYV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  +          + +L    EGYQ L  L+S  Y    G     I   WL +   
Sbjct: 57   ------ESDLLGDEYAHLTILARNNEGYQNLTFLISEAYQKGYGAIGPTIKQEWLIKY-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
             GLI+L+GG  G + +     +  +A++ L  +++ F D  Y+ L R    D        
Sbjct: 110  AGLILLSGGRMGDVGKFLLRGNRAMADQCLDFYQEHFPDSYYLELIRTGRQDEENYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V++A    LP+VATN+  FL  +D+EAH++ +A+     ++   RP   +P  YL++  E
Sbjct: 170  VEVAAEKNLPVVATNDVCFLESDDFEAHEIRVAIHDGYTMADPKRPKNYSPQQYLRSEQE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEAL+N+VEIA+RC+  +++    LP+F   +        E+ L  K+  GL
Sbjct: 230  MCELFSDIPEALQNSVEIAKRCNVTIRLGEYFLPQFPTGDM-----STEDYLVEKSKQGL 284

Query: 320  EVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EDRLNFLYPDPQIRAEKRSEYDERLDIELEVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDIDPLAFDLLFERFLNPERISMPDFDVDFCMEKRDQVIDHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A A + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFAAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVRVLIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPIYCDPEGLNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +LD +  R        +D++ IP DD  ++ +
Sbjct: 524  QFDKNDVEYAGLVKFDFLGLRTLTIINWALDMVNARRTHKNLEPIDITAIPLDDQISFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  ELSYPDVEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKQPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA   GI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAISQGINGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V D     Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDESEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA   +  F  L D C+RVD+KKLNRRV+E L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAILEARQKEGHFKELFDLCARVDTKKLNRRVMEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL++  K A    K       ++F    +     +++          V  + E+  LG 
Sbjct: 884  SSLEDALKAADQHAKAEAIGQTDMFGVLAEKPEQVELSYASTPKWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP+  Y   + +       ++   T RG    +  +V++ +   T++G+RIG  T 
Sbjct: 944  YLTGHPITSYLKEIERYTNGLRLKDVSPTPRGQVTTVVGLVLASKILTTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEIMLF 1015


>gi|242280805|ref|YP_002992934.1| DNA polymerase III, alpha subunit [Desulfovibrio salexigens DSM 2638]
 gi|242123699|gb|ACS81395.1| DNA polymerase III, alpha subunit [Desulfovibrio salexigens DSM 2638]
          Length = 1175

 Score = 1068 bits (2762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1047 (37%), Positives = 601/1047 (57%), Gaps = 33/1047 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA+ + ++  +      PA+AITD  ++F A+ F   A   GI+PI
Sbjct: 4    FVHLHVHTEYSLLDGAIRIKDLCQQAKDFGMPAVAITDHGSMFGAVTFYMTAMDMGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +   D        +        +VLL    +GY+ +I+L S  +L        R
Sbjct: 64   IGCEVYVAPGDIDDELAHTRKDKKGRYHLVLLAKNQQGYKNIIKLCSLGFLEG-FHYKPR 122

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    L +  +EG+I L+   +G + RA          +   T++ +F    Y+ +Q + 
Sbjct: 123  VSKYLLNKY-SEGVIALSACLAGEVPRALMNEGLDAGIEMAKTYESIFPGNFYLEVQANG 181

Query: 191  GYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              ++   ++++ + A    LPLVATN+  +L++EDYEAHD+L+ +   T V  + R R+ 
Sbjct: 182  LKEQEDLNELIYKCAEQTGLPLVATNDCHYLTKEDYEAHDLLLCIQTQTTVDAEKRFRMG 241

Query: 250  PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D  Y K + E    F+ +PEA+ NT +IA  C+  +++     P +   E   I    E
Sbjct: 242  TDQLYFKPQEEFEEYFAHVPEAIANTQKIAEMCNLEIELGNYYFPEYELPEGMTI----E 297

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             E       GL+ R+             Y +RLD+EL VI  M F  YFLIV DFI WAK
Sbjct: 298  TEFVKLCKEGLQKRIEN--APYEIDEAKYWERLDYELGVINEMGFPAYFLIVQDFINWAK 355

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N IPVGPGRGS AGS+ A+AL IT++DP+ + LLFERFLN +R+SMPD D+DFC+ RR 
Sbjct: 356  DNRIPVGPGRGSAAGSIVAWALRITNLDPIPYDLLFERFLNVERVSMPDIDVDFCERRRL 415

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA---- 484
            EV++Y   KYG + VAQI T+G+++ KA ++DVGRA+ M +S+ D + KL+P+DPA    
Sbjct: 416  EVVKYCSEKYGWDHVAQITTYGTMKTKAVIKDVGRAMGMHFSETDPIAKLVPDDPAVIAQ 475

Query: 485  -------HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                         A+            DP + +L++I+ +LEG+ RHASTHAAG+VI D+
Sbjct: 476  GLGVKKAKITVPNAVEAIPELSNMVATDPKIAKLMDIATRLEGMSRHASTHAAGVVISDK 535

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKV 596
            P++  +P+Y+  + +  VTQ++MK +EK GLIKFDFLGL+T+T+++  LD +  Q     
Sbjct: 536  PMTDYLPLYKGKKGE-IVTQYDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIRLQGKEAP 594

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL  +  DD +T+ +     T G+FQ+ESSGMR+ L  ++P C EDIIA+++LYRPGP+ 
Sbjct: 595  DLDTLTLDDQDTFDIFCKGDTDGVFQVESSGMRKYLRMLRPSCFEDIIAMLALYRPGPLG 654

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +V  +  RK+G+ ++  + P ++P LK T GVI+YQEQVM  A  ++ YSL E D+LR
Sbjct: 655  SGMVDEFIKRKHGEIEVTYLWPTLEPSLKPTYGVIVYQEQVMGAAMTIANYSLGEGDLLR 714

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKKI EEM K + RF+ GA +N I +  A +IF+L+ +FA YGFNKSH+AAYA+ISY
Sbjct: 715  RAMGKKIPEEMAKHRVRFVDGAKENNIPEQTANDIFDLMEQFAAYGFNKSHSAAYALISY 774

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TA++K H+PVEF+AA M+ EM+N EKI  +    R  ++ +  P +N     F V +  
Sbjct: 775  YTAYLKAHFPVEFMAALMSTEMNNTEKIIMYINACRDMDVTVRQPDINLGVARFSVYEGD 834

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y +A IK VG      I+E    + PF    DF +RV+ +++ +RV+E L+ AGA D 
Sbjct: 835  IIYGMAGIKNVGEEAIDEIVEERQKNGPFKDFIDFITRVNLRRVTKRVIEYLIRAGAFDS 894

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEK--FSVEN 947
             G +R  L+ SLD    Y Q   K + +   N+        +      ++ E+      +
Sbjct: 895  MGLTRSGLIASLDKAVSYGQKKNKEKESGMINMLDMLGGGGEAEEPAVVSFEEFNMPEMD 954

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                   E+  LGFY + HPL  Y+  + ++G++  E          I+L A++   ++ 
Sbjct: 955  DKEMQRLEKEALGFYLTCHPLLSYRNEMSRLGLQTIENCPNLAHEATIKLGAIITGYKEI 1014

Query: 1008 KTRK-GSRIGWVTFSEPAKEYEANFFP 1033
             T+K G ++ + T  +     E   FP
Sbjct: 1015 ITKKSGKKMAFATIEDMTGSGELIIFP 1041


>gi|88812392|ref|ZP_01127642.1| DNA polymerase III, alpha subunit [Nitrococcus mobilis Nb-231]
 gi|88790399|gb|EAR21516.1| DNA polymerase III, alpha subunit [Nitrococcus mobilis Nb-231]
          Length = 1174

 Score = 1068 bits (2762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1063 (38%), Positives = 603/1063 (56%), Gaps = 60/1063 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +HS +SL +G + +  ++  +A    PA+A+TD  NLF A++F + A  AG++PI
Sbjct: 5    FAHLHLHSEFSLQDGLIRVKPLMQAVAQAGMPAVALTDQGNLFGAVKFYRAAVNAGVKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ +   D  +   +          +VLL +  +GY+ L  L++R YL  Q +    
Sbjct: 65   IGAEIRVADADASERPAR----------LVLLCADTQGYRTLTRLLTRGYLEGQQQGVPV 114

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   WL+     GLI L+GG  G + RA       +A ++L  +++ FGDR Y+ LQR  
Sbjct: 115  VDREWLR-GRCAGLIGLSGGRVGDVGRALLSGEPALAARKLEFWREQFGDRYYLELQRTG 173

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
            R  D       V+LA  H + +VATN+  FL  EDY AH+V + +     ++ K RP   
Sbjct: 174  RPGDEEHVQAAVELATAHGVAVVATNDVCFLRPEDYAAHEVRVCIQDGRTLADKHRPRHY 233

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   YL++  EM  +F+D+PEALENT EIARRC+  L +    LP F   E   I    +
Sbjct: 234  SEQQYLRSPKEMAELFADVPEALENTAEIARRCNLHLTLSHSALPVFPIPEGASI----D 289

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFI 364
            + LR +A  GL+ RL    +       +    Y +RL+ EL VI +M F  YFLIVADFI
Sbjct: 290  DVLRQEAERGLQERLQCSLVTDHPDGVELRRSYSERLERELEVINQMGFPSYFLIVADFI 349

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK+  IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDFC 
Sbjct: 350  RWAKRQGIPVGPGRGSGAGSLVAYALQITDLDPLSYDLLFERFLNPERVSMPDFDIDFCM 409

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + RD VI YV  +YG ++V+QI+T G++ A+A +RDVGR L  PY  VDR+ K+IP +  
Sbjct: 410  ENRDRVIDYVGGRYGRDKVSQIVTHGTMAARAVVRDVGRVLGHPYGYVDRIAKMIPFEIG 469

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+A +         D  V  LL +++KLEGL R+   HA G+VI    L+   P
Sbjct: 470  ITLE-KALAQEEELHRLYREDEEVRTLLGMARKLEGLARNVGRHAGGVVIAPSELTDFAP 528

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDLS 599
            +Y +       TQ++   IE  GL+KFDFLGL+TLT++  ++  +     A     +D++
Sbjct: 529  LYCEPGGQGLATQYDKDDIEAVGLVKFDFLGLRTLTIIDWTVKAVNTQRSACDEPALDIA 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +  DD +T+ LL    T  +FQLES GM+  +  +QPD  EDIIALV+L+RPGP+ + +
Sbjct: 589  ALALDDAKTFELLKRCATTAVFQLESRGMKDLMRRLQPDTFEDIIALVALFRPGPLQSGM 648

Query: 660  V--YNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            V  +  RK+G+  +        H  ++P+LK T G+I+YQEQVMQIAQ L+GYSL  AD+
Sbjct: 649  VDDFIARKHGRAAVAYPTRALHHEALEPILKSTYGIILYQEQVMQIAQTLAGYSLGAADL 708

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  +EM +Q+  F+ GA + G+++  A  +F+L+ KFA YGFNKSH+AAYA++
Sbjct: 709  LRRAMGKKKPQEMAQQRHIFLQGAIECGLARQQAEGLFDLMEKFAGYGFNKSHSAAYALL 768

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-G 831
            +YQTAW+K HYP  F+AA ++ +MDN +K+     + R   I + PP VN     F+   
Sbjct: 769  AYQTAWLKAHYPAPFMAAVLSSDMDNTDKVVALIDECRCLQIILDPPDVNRSGYAFQARE 828

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I Y L A+KG+G +    ++EA  A  P+  L D C RVD +++N+RV+E+L+ +G+
Sbjct: 829  MTHIVYGLGAVKGLGLSAIEALVEAREAGGPYADLFDLCRRVDLRRVNKRVIETLIRSGS 888

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI---TLEKFSVEN 947
            LD    +R    Q L +  + A+   +NR     ++F              +       +
Sbjct: 889  LDGLAVNRATAWQQLPDALRSAEQQCRNRDTGQVDLFGLGATPLEQAPLTVSDPGVPEWD 948

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ- 1006
               R   E+  LG Y +GHP++ Y+  L  +      +  A   G   R       +++ 
Sbjct: 949  EQERLAAEKATLGLYLTGHPIEHYEAELDGIVSARLNQVSAGACGEPARGVG----RKRE 1004

Query: 1007 ----------------KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                            + T+ G R+G++T  +     +   FP
Sbjct: 1005 GERKVVVAGLVVALRARPTQNGGRMGFITLDDRTGRMDVIVFP 1047


>gi|313906491|ref|ZP_07839825.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
 gi|313468681|gb|EFR64049.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
          Length = 1157

 Score = 1068 bits (2761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1047 (35%), Positives = 575/1047 (54%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YSLL+G+  + + + ++      A AITD   ++  + F ++  AAGI+P
Sbjct: 2    SFVHLHTHTEYSLLDGSNKIKDYVARVKELGMNAAAITDHGVMYGCIAFYKECLAAGIRP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +      +   +          ++LL    EGY  L+++VSR +         
Sbjct: 62   ILGCEVYVAPGSRFQ--KEAGNSEERYYHLILLAENNEGYHNLLKIVSRGFTEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+ L  L+E   EG+I L+   +G +      N  +   +  L ++++F     ++ LQ 
Sbjct: 119  RVDLEVLREYH-EGIICLSACLAGEVATYLAKNMYEEGLQAALRYQEIFGKGNFFLELQD 177

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +     Q+++++    + LV TN+  +   ED +AHD+L+ +     VS ++R R
Sbjct: 178  HGIPQQQVVNPQLLRMSEETGIELVCTNDCHYTRAEDADAHDILLCIQTGKKVSDENRLR 237

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM ++F    +ALENT +IA RC+  ++ H   LP++   E       
Sbjct: 238  YEGGQYYVKSEEEMAALFPYAKQALENTQKIADRCNVEIRFHELKLPKYEVPEG----YT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+     G+                + R+RLD+EL+VI  M +  YFLIV D+I +
Sbjct: 294  SWTYLQKICEDGIRKLY-------DPVTDEIRERLDYELDVIRTMGYVDYFLIVWDYIHF 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK++ IPVGPGRGS AGS+ +YA+ IT++DPL++SLLFERFLNP+R+SMPD D+DF  +R
Sbjct: 347  AKEHGIPVGPGRGSAAGSIVSYAMGITELDPLKYSLLFERFLNPERVSMPDIDVDFGFER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG++ A+ A+RDVGR L +PY+  D   K+IP +    
Sbjct: 407  RQEVIDYVVRKYGKDRVVQIVTFGTMAARNAIRDVGRVLDLPYALCDSTAKMIPQELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   ++   AD  +  L+++++KLEGL RH S HAAG+VI  + + + VP+ 
Sbjct: 467  ID-KALKMNPELKKEYEADDQIRYLIDMARKLEGLPRHTSMHAAGVVISSKEVDEFVPLQ 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                     TQ+NM  +E+ GL+K DFLGL+TLT++Q ++        V +D+  I ++D
Sbjct: 526  TAA-DGTVTTQYNMTELEELGLLKMDFLGLRTLTVIQDAVSMAQRNHNVSIDMMKIDYND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                 ++      G+FQLES+GM+  ++ ++P  +EDI+A V+LYRPGP+D I  Y   K
Sbjct: 585  PAVMKMIGEGKDEGVFQLESAGMKSFMKELKPSSLEDIVAGVALYRPGPMDFIPQYIRGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
               +++    P +  +L+ T G I+YQEQVMQI + L+GYS   +D+LRRAM KK    M
Sbjct: 645  KHPDEVQYDCPQLKAILEPTYGCIVYQEQVMQIVRELAGYSYGGSDLLRRAMSKKKMHVM 704

Query: 726  DKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            ++++  F+ G  +        NGI + +A  I++ +  FA Y FNKSHAAAYA++S+QTA
Sbjct: 705  EEERRNFVYGNEERGIPGCIRNGIDEKVANKIYDDMIDFAKYAFNKSHAAAYALVSFQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K +YPVEF+AA MT  +DN  K  ++    R   I+I+PP++N     F V D +I Y
Sbjct: 765  WLKCYYPVEFMAALMTSVIDNTAKCAEYMMHTRALGIEILPPNINKSEGTFSVEDGKIRY 824

Query: 838  SLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            +L+AIKGVG      I +E   +  F +L DFC R+  +++N+R LE+ + AGA DC G 
Sbjct: 825  ALSAIKGVGRPVIDAISLERDQNGSFKNLGDFCRRLTGREVNKRTLENFIKAGAFDCLGG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +Q    +   A   +KN      ++F    E+     +I L      +       
Sbjct: 885  TRRQFMQVYTLVADQAVKEKKNNATGQLSLFDLMGEEDRQQYEIRLPDVGEFDKEEILSF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEE--------SVATIRGNNIRLAAMVVSKQQ 1006
            E+ V G Y SGHPL+  +   RK       +              GN   +  ++V K  
Sbjct: 945  EKEVTGIYISGHPLESDEKKWRKNITCVSADFALPEEGNLPKLKDGNRETIGGIIVDKTI 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T K   + ++T  +     E   FP
Sbjct: 1005 KYTSKNQTMAFLTIEDLVGSVEVIVFP 1031


>gi|218135117|ref|ZP_03463921.1| hypothetical protein BACPEC_03022 [Bacteroides pectinophilus ATCC
            43243]
 gi|217990502|gb|EEC56513.1| hypothetical protein BACPEC_03022 [Bacteroides pectinophilus ATCC
            43243]
          Length = 1200

 Score = 1068 bits (2761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1098 (34%), Positives = 577/1098 (52%), Gaps = 86/1098 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +E   +F HL VH+ YSLL+G   +N I+ +       ++AITD   ++  ++F + A  
Sbjct: 1    MEIRMAFTHLHVHTEYSLLDGLSKINEIVSQAKKLGMDSLAITDHGVMYGVIDFYRAALK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIGC++ +          +          +VLL     GY  L+++VS+ ++   
Sbjct: 61   EGIKPIIGCEVYVAPGSRFD--KEAGAGDDRYYHLVLLAENDTGYHNLMKIVSKGFVEG- 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
                 R+    L E   EG+I L+   +G + R    N  +   K  L ++++F     +
Sbjct: 118  FYYKPRVDYEVLSEYH-EGVIALSACLAGEVQRYLARNMYEEGVKAALRYQEIFGKGNYF 176

Query: 184  VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ H   ++ +   Q+++++    + LVATN+  +   +D  AHD+L+ +  S  ++ 
Sbjct: 177  LELQDHGIPEQRFVNQQLMRMSRELGIDLVATNDVHYTFADDASAHDILLCIQTSKKITD 236

Query: 243  KDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             DR +     +YLK+  EM  +F+  P+AL+NT +IA RC+  ++     LP++      
Sbjct: 237  TDRMKYEGGQYYLKSEQEMRELFAYAPQALDNTAKIAARCNVEIEFGVQKLPKYDTPA-- 294

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             +       LR     G   R            +D R+RLD+EL+VI  M +  YFLIV 
Sbjct: 295  -VYASSSEYLRWLCNRGFGKRYPDA-------PEDVRKRLDYELSVINEMGYVDYFLIVW 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI +AK N+I VGPGRGS AGSV AY L ITDIDP+++SL+FERFLNP+R+SMPD D+D
Sbjct: 347  DFINYAKSNDISVGPGRGSAAGSVVAYCLEITDIDPIKYSLIFERFLNPERVSMPDIDVD 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR EVI YV  KYG +RV QI+TFG++ A+A ++DVGR L +PY+  D + K+IP 
Sbjct: 407  FCFERRQEVIDYVVRKYGKDRVCQIVTFGTMAARAVIKDVGRVLDLPYALRDSVSKMIPR 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +  +AI  +   +    +D +V  L++ S++LEGL RHAS HAAG+VI  + + +
Sbjct: 467  ELGITID-KAIEMNPELKALYNSDETVHDLIDKSRRLEGLPRHASMHAAGVVISQKAVDE 525

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
             VP+ R       V QF M  +E+ GL+K DFLGL+TLT++Q +   + +     D+  I
Sbjct: 526  YVPLSRGS-DGSIVAQFVMTTLEELGLLKMDFLGLRTLTVIQSAEHMVRKVVPDFDIDKI 584

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             ++D   + +L+T  T G+FQLESSGM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y
Sbjct: 585  DYNDAAVFDMLSTGRTEGVFQLESSGMKSFMKELKPHSMEDIIAGISLYRPGPMDFIPQY 644

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               KN +  IV   P ++P+L+ T G I+YQEQVMQI + L+GYS   +D++RRAM KK 
Sbjct: 645  IKGKNDRSSIVYDCPQLEPILEPTYGCIVYQEQVMQIVRDLAGYSWGRSDLVRRAMSKKK 704

Query: 722  KEEMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               M++++  FI G  +        NGI + +A +I++ +  FA Y FNKSHAA YAV++
Sbjct: 705  AYVMEQERRNFIYGNPEENVKGCVNNGIDEKVAGHIYDNMIDFAKYAFNKSHAACYAVVA 764

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++KTHYP +F+AA MT  +DN  K+ ++    RQ  I I+PP VN     F V  N
Sbjct: 765  YQTAFLKTHYPTQFMAALMTSVIDNSTKVAEYVMACRQMGIDILPPDVNEGEYGFSVSGN 824

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L+AIK +G      ++     +  F +L DF  R+  K+ N+R +E+ + +GA D
Sbjct: 825  AIRYGLSAIKSLGRPVIEALVNERSENGKFKNLRDFIERM-GKEANKRTIENFIKSGAFD 883

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSV 950
            CF  +R Q +     I       EKN      ++F    E+     +I +          
Sbjct: 884  CFEGNRRQQMLVYSQIVDDVARNEKNSLTGQMSLFDFVDEETKAEFEIKMPDVPEYGKKE 943

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA----------TIRGNNI----- 995
                E+ VLG Y SGHPLD Y  +  K       +               R  N+     
Sbjct: 944  LLAFEKEVLGIYVSGHPLDEYIDMWNKYTTARTSDFEPEDEDAQQPQMAERTQNVLRVDM 1003

Query: 996  ----------------------------------------RLAAMVVSKQQKKTRKGSRI 1015
                                                     +  ++  K  K T+    +
Sbjct: 1004 SEYMNTPGGVKDYVPDYVDVGSPSDEGGRDEGALRDGDEVTIGGIITDKTVKSTKTNQLM 1063

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +VT  +     E   FP
Sbjct: 1064 AFVTVEDMYGTVEVIVFP 1081


>gi|289523190|ref|ZP_06440044.1| DNA polymerase III, alpha subunit [Anaerobaculum hydrogeniformans
            ATCC BAA-1850]
 gi|289503733|gb|EFD24897.1| DNA polymerase III, alpha subunit [Anaerobaculum hydrogeniformans
            ATCC BAA-1850]
          Length = 1144

 Score = 1067 bits (2760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1034 (37%), Positives = 614/1034 (59%), Gaps = 32/1034 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA+ + +++ +       A+A+TD   +F A+EF  +    G++PI
Sbjct: 10   FVHLHVHTEYSLLDGAIKIKDLVSRAKEWDMGAVAVTDHGVMFGAIEFYYECMKQGVKPI 69

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +D + + +   QG         ++LL    EGY+ L++LVS   +        R
Sbjct: 70   MGCEVYVDPKGHTRREGQGGN-----YHLLLLAENEEGYRNLVKLVSIANVEG-FYYKPR 123

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
            +    L +  ++GLI  +   +G +           A+++ L ++ +FG+   Y+ +  +
Sbjct: 124  VDYDLLSKY-SKGLIASSACLAGEVPSLILSGRYDEAKEKALLYRDIFGEGNFYLEIMSN 182

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++      V++LA    +PL+ATN++ +L   D + H++L+ V  ++ V+ K+R + 
Sbjct: 183  GLSEQAVANKHVIELARKANIPLLATNDAHYLESYDADWHEILLCVQTNSTVNSKNRFQF 242

Query: 249  -TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + + YL++  EM  IF D L +AL NTV+I+ RC+  L+    +LP +   E + +   
Sbjct: 243  GSKEFYLRSPVEMWKIFGDELSDALHNTVDISERCNVKLEFGQYMLPEYKVPEGETL--- 299

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+ L  KA  GL  R            Q+Y +R+++EL VI +M F+GYFLIV DFI  
Sbjct: 300  -ESYLALKAQEGLARRFGG-----REIPQEYIKRMEYELGVIKQMGFAGYFLIVQDFINA 353

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+  IPVGPGRGS AGS+ AYAL IT+IDP+ ++LLFERFLNP+R+SMPD D D    R
Sbjct: 354  AKERGIPVGPGRGSAAGSLVAYALRITEIDPITYNLLFERFLNPERISMPDIDTDISDKR 413

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV  KYG ++VAQIITF  ++++AA+RDVGRAL MPY  VD++ KLIP + +  
Sbjct: 414  RDEVIDYVVEKYGRDKVAQIITFDRMKSRAAVRDVGRALDMPYPDVDKVAKLIPFNVSSI 473

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               +A+      +     +  V +LL+ +  +EG+ RH S HAAG+VI   PL  +VP+ 
Sbjct: 474  --EEALELSHELKALYDGNREVKQLLDYASHIEGIARHCSQHAAGVVISPEPLVNIVPL- 530

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            + +     VTQ+ M+ +EK GL+K DFLGL+TL++++++L  +A+      DL+ +P DD
Sbjct: 531  KAINGTQIVTQYPMEPLEKLGLVKMDFLGLRTLSMIEETLKNIAKNGKKVPDLTQLPMDD 590

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
              T+ +L    T+G+FQLESSGMRQ L+ + PD  +DIIA+++LYRPGP+ + +V  Y  
Sbjct: 591  RATFEMLQRGDTMGVFQLESSGMRQLLKKLCPDSFQDIIAVLALYRPGPLGSGMVDQYIE 650

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+  I   HP ++  LKET G+I+YQEQVMQIA  L+GY+L +AD+LRRAMGKK  E
Sbjct: 651  RKHGRSPISYPHPALEEALKETYGIILYQEQVMQIAARLAGYTLGQADILRRAMGKKKVE 710

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM++Q++ F+ G  +N +S   A  IF+L+  FA YGFNKSH+AAYA+ISYQTA++K HY
Sbjct: 711  EMEEQRQVFVKGCLENAVSAEQANEIFDLIQYFAGYGFNKSHSAAYAMISYQTAYLKAHY 770

Query: 784  PVEFLAASMTLEMDNVEKI-KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            PVEFLAA ++  +   ++I  ++ ++ R   I+++PP VN     F    + + + L A+
Sbjct: 771  PVEFLAAFLSSHIGAKKEILARYVREVRSDGIEVLPPDVNESEAGFTAVGDVVRFGLTAV 830

Query: 843  KGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
               G+     I++A  +  P+ SL DF SR+D + +N+ V+ESL+  GA D    +R Q+
Sbjct: 831  AKAGSGAVEAILKARKEGGPYKSLWDFVSRIDLRAVNKSVIESLIGVGAFDGLHSNRRQI 890

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLG 960
            L+SL  + +    +++++    + +F+ +     D +  L          + E E+  +G
Sbjct: 891  LESLPVLLEARARLDEDKF--QQRLFSLDGNDSLDVEPALVDIEDFEFHEKLELEKDAVG 948

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y SGHP + Y+  +RK       E +          +  +V    +K T+KG  +G V 
Sbjct: 949  LYISGHPFEAYEERVRKYAYCTPSELIHWCSPQAKPLVGGIVTDVAEKYTKKGDLMGIVG 1008

Query: 1020 FSEPAKEYEANFFP 1033
              +   + E   FP
Sbjct: 1009 VEDLDAKLEVVCFP 1022


>gi|320159593|ref|YP_004172817.1| DNA polymerase III alpha subunit [Anaerolinea thermophila UNI-1]
 gi|319993446|dbj|BAJ62217.1| DNA polymerase III alpha subunit [Anaerolinea thermophila UNI-1]
          Length = 1321

 Score = 1067 bits (2760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1043 (36%), Positives = 578/1043 (55%), Gaps = 35/1043 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G  +   ++ +      PA+AITD   +F  +EF Q A AAGI+P
Sbjct: 2    SFAHLHVHTQYSLLDGFSNPKQLVARAKEMGMPAVAITDHGTMFGVIEFFQAATAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +  +   +M ++      +   ++LL     GYQ L+++ S   L      + 
Sbjct: 62   IIGLEAYMAAR---RMQDRDPKLDKSSFHLLLLAENQTGYQNLLKIASAAQLEG-FYYNP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI   +L E   EGLI  TG  S  I  A      + A K    + ++F  +  +  LQ 
Sbjct: 118  RIDHDFLAE-HHEGLICTTGCLSAEIPEALKEGDVERARKLADWYYEVFGAENFFFELQN 176

Query: 189  HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   + +    Q+++L   +    +ATN+  +++ ED    DVL+ +    ++S+  R R
Sbjct: 177  HDIPELQAVNRQLIELGKRYNARFIATNDVHYINPEDARLQDVLLCIQTGNLLSEPKRFR 236

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            ++ D  YL++  EM  +F+D+PEAL NT+ IA RC+  L      LPRF   E       
Sbjct: 237  MSVDTFYLRSPEEMSRLFADIPEALSNTLLIAERCNVDLTSKGYHLPRFPVPEG----YT 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E  LR     GL  R               R+RL++EL VI +M F  YFLIV D  Q+
Sbjct: 293  AETYLRELCEQGLRRRYGT-----RADDPVVRERLEYELRVIHQMGFDAYFLIVWDLTQY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++N I     RGS AGS+ AY L IT ++P+   L+FERFLNP R+SMPD D+DF  D 
Sbjct: 348  AQRNGIWYN-ARGSAAGSMVAYVLGITMVEPIEHGLIFERFLNPGRISMPDIDLDFQDDL 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R  ++ Y  ++YG ++VAQIITFG+L AKAA+RDVGR + +P ++VDRL K++   P   
Sbjct: 407  RPRMLEYCASRYGDDKVAQIITFGTLGAKAAIRDVGRVMDIPLAEVDRLSKMLSTAPNKN 466

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V++ +A+     F+ A      +  L++ + ++EG+ R+A THAAG+VI D P+ Q +P+
Sbjct: 467  VTIREALETVPEFKAAYEEADYLRDLIDTAARMEGVVRNAGTHAAGVVITDEPIVQYLPL 526

Query: 546  YRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
            +R            VTQF M  IE  GL+K DFLGL TLT++Q++   + QR  V+++L 
Sbjct: 527  HRPTSGSEESPIKTVTQFEMSIIESLGLLKVDFLGLATLTIMQRACQLIEQRHGVRLNLH 586

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD ETY  L    T G+FQLE SGM + L  M+P  ++ +IA+V+LYRPGP+D I 
Sbjct: 587  NIPTDDPETYEFLAQGHTAGVFQLEGSGMTRFLVQMRPQTLDHVIAMVALYRPGPLDFIP 646

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R +G+E +   HP ++P+ KET G+ +YQEQ+M+ A  L+GY++SE+D LR+A+ K
Sbjct: 647  TYIRRMHGEEPVQYRHPALEPIFKETYGIPVYQEQIMRAAVELAGYTMSESDELRKAIAK 706

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+++ K +E+FI GA + GI +  A  IF+   +FA YGFNKSHAA Y VI+ QTA++
Sbjct: 707  KQKDKLLKHREKFIKGAVQRGIDEETAAAIFDDWEEFARYGFNKSHAADYGVIAVQTAYL 766

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNR 834
            K HY  E++ A ++   +  EK+  +  DA+   + ++PP +NT   DF +     G   
Sbjct: 767  KKHYTAEYMTALLSASKNETEKVAFYVADAKNLGVPVLPPDINTSGWDFTIEDQPDGKPA 826

Query: 835  IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L A+K VG      I++A  +  PF SL DF SRVD + + +R LE L+  GALD 
Sbjct: 827  IRFGLGAVKNVGQNAVEMILQAREEGGPFQSLTDFASRVDLRSVGKRSLECLIKVGALDR 886

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT---LEKFSVENSSV 950
            FG +R  LL+ +D I   +    +  ++     F    G   D I    L   +  ++  
Sbjct: 887  FG-NRKALLEIMDTILNVSASHFRAVSSGQLTFFGATVGANVDAIENIHLPFTTSMDTRE 945

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            + E E+ ++G Y S HPL+ Y   +RK       +         + +  MV   +Q +T+
Sbjct: 946  QLEWERELIGLYVSDHPLNPYWNSMRKRLSYYSNQLADLRNHTPVSVGGMVTRFRQHQTK 1005

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
             G  + +VT  +     E   FP
Sbjct: 1006 NGKPMAFVTLEDLRGPIELVIFP 1028


>gi|83954740|ref|ZP_00963451.1| DNA polymerase III subunit alpha [Sulfitobacter sp. NAS-14.1]
 gi|83841024|gb|EAP80195.1| DNA polymerase III subunit alpha [Sulfitobacter sp. NAS-14.1]
          Length = 1177

 Score = 1067 bits (2759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 505/1068 (47%), Positives = 689/1068 (64%), Gaps = 58/1068 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++P F+HL+ HS YSLLEGAL L  + D       PA+A+TDTNN+F+ALEFS     
Sbjct: 1    MAQAPRFIHLRTHSEYSLLEGALRLKKLPDLCKGADMPALALTDTNNMFAALEFSVAMAG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+D+           G+ P    P +VLL  +  GY+ L++L S +Y+ D+
Sbjct: 61   AGVQPIIGCQVDLAY----VKVQPGEKPRDPAP-VVLLAQSEAGYENLMKLNSCLYI-DK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G    ++ L  L E    GLI LTGG+ GP+ +         AE  +      F DRLYV
Sbjct: 115  GGALPQVTLEEL-EALNGGLICLTGGAGGPVGQLLQGGQRPAAEALMARLHGAFADRLYV 173

Query: 185  NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G D      +  E   V++AY   +PLVATN+  F + + YEAHD L+ +A   
Sbjct: 174  ELQRHPGEDGQPVAEQLTERGFVEMAYDMGIPLVATNDVYFPNADMYEAHDALICIADGA 233

Query: 239  VVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q+ +R R+T  HY K+++EMV++F+DLPEA+ENTVEIA+RC+F+     PILP+F +
Sbjct: 234  YVDQQHERRRLTAQHYFKSQAEMVTLFADLPEAIENTVEIAKRCAFMAYRRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E +        EL+ +A  GL+ RL    I      ++Y +RLDFEL +I  M F GYF
Sbjct: 294  DEIE--------ELKRQAHEGLKNRLK--VIPHATTVEEYEKRLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK NNIPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKDNNIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIQYVQRKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+ +A+AD+ R RE    +  V RLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALADEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D +   G   
Sbjct: 524  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKSSGRHL 583

Query: 596  -----------------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                              D++ IP DD  +Y L  +  T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  HVAADGTELFEPPEGLIDDIATIPLDDEASYKLYASAKTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG+ +  S+HP ID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPVYCEVKNGQRERESVHPSIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  GA  NG+ K  A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMANGVDKKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R +  +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKRLELPWV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA----DKPFDSLEDFCSRVD 873
            PP VN     FKV +  + Y+L A+K VG    + I E       DKPF +L D   RVD
Sbjct: 824  PPCVNRSDATFKVVEGALVYALGALKNVGVEAMKLITEGRKVDGVDKPFATLFDLARRVD 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             K++ +R LE L  +GA D    +R ++ QSLD +  Y+  + + + +   ++F  E G 
Sbjct: 884  LKRVGKRPLEMLARSGAFDQLDNNRRRVWQSLDGLVSYSAAIHEQKASNQVSLFG-EAGD 942

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK------GYEESV 987
               +  +       ++ R   E + +GFY SGHPLD Y   +++            +E  
Sbjct: 943  DLPEPRIVPCDDWEAAERLTEEFKAVGFYLSGHPLDDYMGPMKRKSATGGVPFLTLDELT 1002

Query: 988  AT--IRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++G  N RLA +V  +Q++K+ +G+R  +   S+P   YE   F
Sbjct: 1003 EKVSVKGAMNARLAGIVAGRQERKSARGNRFAFAQLSDPTGAYEVTLF 1050


>gi|88798272|ref|ZP_01113858.1| DNA polymerase III subunit alpha [Reinekea sp. MED297]
 gi|88779048|gb|EAR10237.1| DNA polymerase III subunit alpha [Reinekea sp. MED297]
          Length = 1167

 Score = 1067 bits (2759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1052 (39%), Positives = 611/1052 (58%), Gaps = 45/1052 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL +G + + +++++ +  + PA+A+TD +N F  ++F      AGI+P
Sbjct: 3    SFVHLRLHTEYSLTDGIVRIKDLINRASELEFPAVAVTDISNFFGLVKFYNGCLGAGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G  L I+  D+                + +L     GY+ L EL+S  +  +Q     
Sbjct: 63   ILGADLYIENPDD----------DNAPFLMTVLAMNETGYRNLTELISDGFQKNQKHDRA 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               + WL E   EGLI+L+G   G +  A    ++  AE  +  +K +FGDR Y+ LQR 
Sbjct: 113  ITRVEWLAE-KNEGLIVLSGARLGDVGYALLRGNNDRAESLVQHWKSVFGDRYYLELQRT 171

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  D       V L   + +P+VATN+ +FL+ ED+EAH+  + +     +    RPR 
Sbjct: 172  GRDQDESLVQGAVALGRKYGVPVVATNDVMFLTREDFEAHETRVCINDGVTIDDPKRPRR 231

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YLK+  EM  +F D+P+ALEN+V IA+RCS  +Q+    LP +   E   +    
Sbjct: 232  YAEEQYLKSSDEMTELFRDIPQALENSVLIAQRCSATVQLGKYFLPDYPVPEGLTM---- 287

Query: 308  ENELRNKAVAGLEVRLAQGAIAK----GYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++  R  +  GLE RLA     K        Q Y  RL FEL++I +M F GYFLIV DF
Sbjct: 288  DDYFRQLSAEGLERRLAVALDPKQPDFEERRQQYFDRLKFELDIIIQMGFPGYFLIVMDF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+W K N +PVGPGRGSGAGS+ A+ L ITD+DP+ + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IRWGKNNGVPVGPGRGSGAGSLVAWVLDITDLDPIEYDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + R+ VI YV   YG + V+QI+TFG++ AKA +RDV R    P+   D+L KLIP DP
Sbjct: 408  MEGRERVINYVAETYGRQAVSQIVTFGTMAAKAVVRDVARVQGKPFGLADKLSKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A+ + +  +E    D     + E++ KLEG+ R    HA G+VI    L+   
Sbjct: 468  GMKLT-KALDEVAELKEFLEEDEEAAEIWEMALKLEGITRQTGKHAGGVVIAPTKLTDFS 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDL 598
            P+  +      VTQ++   +E AGL+KFDFLGL+TLT++  +L  +  R        +D+
Sbjct: 527  PLLCEEDGTGLVTQYDKNDVEAAGLVKFDFLGLRTLTIIDWALKIINPRLEAQGKEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD  ++ LL    T  +FQLES GM+  +  +QPDC+ED+IALV+L+RPGP+ + 
Sbjct: 587  AHIPLDDAASFELLQQAKTTAVFQLESRGMKDLVMRLQPDCLEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + NRK+G+E++        H  ++P+L  T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFINRKHGREELSYPDSQYQHEWLEPILAPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRAIFEEGAIGKGVDGNLAMRIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQT W+KTHYP  F+AA+M+ E+ N EK+  F ++ RQ NI ++PP VN     F V 
Sbjct: 767  VSYQTLWLKTHYPAAFMAATMSSELQNTEKVVIFVEECRQINIDVLPPDVNAGDYYFTVN 826

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              ++I Y L AIKGVG      I+ A     PF  L DFC R+D KK+N+R +E+L+ AG
Sbjct: 827  EQDQIIYGLGAIKGVGEGPVEAIVNARRSGGPFKDLFDFCERIDPKKVNKRSIEALIKAG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948
            ALD  G +R  +L++  +  K A+    N      ++F   +   +  +      V  S 
Sbjct: 887  ALDSIGPNRQLMLEATPDAVKTAEQSAANAAAGMMDMFGAIEAEETGDVYEPYAHVREST 946

Query: 949  -SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY-------EESVATIRGNNIRLAAM 1000
              +R   E+  LG Y +GHP+D ++  +R++            EE     RGN   LA +
Sbjct: 947  LKIRLAGEKDTLGLYLTGHPIDEFENEVRQVATLRLGELDGSAEELKRARRGNIKTLAGL 1006

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V+  + ++T++G  +  VT  +     E   F
Sbjct: 1007 VMGVRTRQTQRGDTMAIVTLDDRTGRIEMTLF 1038


>gi|291542868|emb|CBL15978.1| DNA polymerase III catalytic subunit, DnaE type [Ruminococcus bromii
            L2-63]
          Length = 1174

 Score = 1067 bits (2759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1045 (34%), Positives = 572/1045 (54%), Gaps = 40/1045 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL +H+ YSLL+GA  L+ +          A+AITD   ++ A++F ++    GI+P
Sbjct: 2    AFTHLHLHTEYSLLDGACRLSRLAKAAKEKGMTALAITDHGVMYGAVDFYKECKKQGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  Q     T    + +     +VLL     GYQ LI+LVS+ +         
Sbjct: 62   IIGCEVYVAPQSRFDKT----SSYGKYYHMVLLCKNHTGYQNLIKLVSKGFTEG-FYTKP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI    L E   EGL+ L+   +G I +         A+ +   ++ +F  +  ++ LQ 
Sbjct: 117  RIDDELLAEYH-EGLVCLSACLAGEIPQKLLDGDYAGAKSKAEFYRDIFGSENFFIELQD 175

Query: 189  HRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ R    ++++A    + +VATN+  ++ ++D   H++L+ +  +  V+  DR  
Sbjct: 176  HGIEEQKRIIPSLIKIAREIGVDIVATNDCHYIEKQDSTVHNILLCIQTNRTVNDSDRME 235

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + YLK   EM  +F+  PEA++NT +IA  C+   +     LPRF     +D    
Sbjct: 236  FKTSEFYLKTEDEMREVFASYPEAIDNTQKIADMCNVDFEFGVRKLPRFDVPNNED---- 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              +  R K   GL     +         Q    RL++E+N +++M F  Y+LIV DF+ +
Sbjct: 292  HLHYFRRKCYEGLYKHYGENPD------QSLIDRLEYEINTVSQMGFVDYYLIVNDFVSY 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGSGAGS+ AY + IT IDP++++LLFERFLNP+R+SMPDFD+DFC++R
Sbjct: 346  AKSCQIPVGPGRGSGAGSLCAYCIGITAIDPIKYNLLFERFLNPERVSMPDFDVDFCKER 405

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG + VAQII+FG++ A+ A+RDVGR L++PY+ VD + KL+P +    
Sbjct: 406  RGEVIDYVVRKYGEDHVAQIISFGTMAARGAIRDVGRVLEIPYATVDSVAKLVPMEHDMT 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+      R     DP + +LL+++  +EG+ RHA+ HAAG+VI D+P+S  VP+ 
Sbjct: 466  IE-EALKLSPNLRSRCNNDPQIKKLLDVAMSIEGMPRHATMHAAGVVITDKPVSDYVPLS 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            +    D  VTQF M  +E+ GL+K DFLGL+ LT++  +   +  +    +  ++  +D 
Sbjct: 525  K--NDDNVVTQFTMTALEELGLLKMDFLGLRNLTVINDAEKQIKHKNPDYNPDMVDENDK 582

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + + + +   T G+FQ ES GM+  L  ++P+ IED+IA+ +LYRPGP+D+I VY + ++
Sbjct: 583  KVFEMFSKGYTEGVFQFESQGMKNVLTQLKPERIEDLIAVTALYRPGPMDSIPVYIDCRH 642

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                I   HPL+  +L  T G IIYQEQVMQI + L+GYSL  AD++RRAM KK    M+
Sbjct: 643  NPSHIRYKHPLLKEILGVTSGCIIYQEQVMQIFRTLAGYSLGRADIVRRAMSKKKLAVME 702

Query: 727  KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
             ++E FI             G  + G+ +  A+++++ +  FA Y FNKSHAAAYA ISY
Sbjct: 703  SEREIFIHGLTDDDGNIIVEGCIRRGVDEKTAISVYDEMESFAHYAFNKSHAAAYANISY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +TAW+K HYP E++AA ++  +DN  K+  +  + ++  I+++PP+VN   + F V  N 
Sbjct: 763  KTAWLKCHYPREYMAALLSSVLDNQNKLASYITECKRLGIRVLPPNVNESNLHFTVSGND 822

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I Y L A+K +G      I+    + P++   DFC R+  + +N R +ESL+  GA D  
Sbjct: 823  IRYGLLAVKNLGRNFIDEIISERINNPYEDFFDFCKRLYGRNMNSRAIESLIKCGAFDGL 882

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-GTFSDKITLEKFSVENSSVRFE 953
            G +R QLL     +    ++  +       + F   +    S K  +        S    
Sbjct: 883  GANRRQLLAISKTVLDDVEYESRRNAGGQMSFFDDAEVDAQSSKPKIPDLPEFPVSELLH 942

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKM-----GIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             E  + G Y SGHPLD Y    + +     G     +S     G  + L  +V   + + 
Sbjct: 943  MENEIAGMYLSGHPLDEYTTFSKAIHSDKTGDIINNDSGMYFDGKKVNLVCIVAKLKTQL 1002

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T+    + +V   +     E   FP
Sbjct: 1003 TKNNRIMAFVNAEDRYGMLEIVIFP 1027


>gi|170758690|ref|YP_001788703.1| DNA polymerase III DnaE [Clostridium botulinum A3 str. Loch Maree]
 gi|169405679|gb|ACA54090.1| DNA polymerase III, alpha subunit [Clostridium botulinum A3 str. Loch
            Maree]
          Length = 1185

 Score = 1067 bits (2759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1075 (35%), Positives = 602/1075 (56%), Gaps = 55/1075 (5%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q+ EK P ++ L  H+ YSLL+ +  + +++ K       +IAITD   ++  ++F ++
Sbjct: 4    NQFDEKKPEWISLHQHTEYSLLDSSAKIADLIKKAKEFGMKSIAITDHGVMYGCVDFYKE 63

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   GI+PIIGC++ +  +    M  + +        +VLLV    GY+ L+E+VS+  +
Sbjct: 64   AIKQGIKPIIGCEIYVASKS---MYIKQQDKENETHHLVLLVKNEIGYKNLMEIVSKASV 120

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                    R+   +L++  +EGLI L+    G +       + + AE+  L +K +F + 
Sbjct: 121  EG-FYYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFEEG 178

Query: 182  LYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ LQ H   ++ +    +V+++   ++PLVATN+  ++ +EDY++HD+L+ +     V
Sbjct: 179  FYLELQYHGMEEQLKVNEALVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTV 238

Query: 241  SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +++R R   D  YLK+  EM   FS +PEALENTV+I+  C+F    H   LP+F  +E
Sbjct: 239  EEENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEE 298

Query: 300  CDDIQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYR-------------QRLDFE 344
              D        LR     GL +R    +  I   +   +               +RL++E
Sbjct: 299  GVDPY----EYLREICFKGLFLRYEVLKDFIDNPFSIDEVLVYGDENKEAFDLIERLNYE 354

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L++I +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+F
Sbjct: 355  LSIIKQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIF 414

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNPDR+SMPD D DFC +RR EVI YV  KYG   V+QIITFG++ A+A +RDVGRA
Sbjct: 415  ERFLNPDRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDVGRA 474

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            +  PY++VDR+ K+IP+     +  +A+  +   +E    +  V  L+++++ LEGL RH
Sbjct: 475  MNYPYAEVDRIAKMIPSVLNITID-KALELNPELKETYDDEERVKELIDVARALEGLPRH 533

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             STHAAG+VI  +PL   VP+ +    +  VTQF M  +E+ GL+K DFLGL+TLT+++ 
Sbjct: 534  TSTHAAGVVIASQPLVNYVPLQK--NEESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRD 591

Query: 585  SLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++  + + +G+ +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +EDI
Sbjct: 592  AVRIIRENKGIDIDLDNIDFEDKEVYKMIGQGQTVGVFQLESAGMTSFMKELKPDSLEDI 651

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            IA +SLYRPGP+  I  Y   KN    I      ++P+L  T   I+YQEQVMQI + L+
Sbjct: 652  IAGISLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDLA 711

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAK 755
            GYS+  +D++RRAM KK  + M++++  FI         G   NGI + +A N+F+ +  
Sbjct: 712  GYSMGRSDLVRRAMSKKKHDVMEQERRNFIYGNGDEGVKGCINNGIDENVANNLFDSMMD 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSHAAAYAV+ +QTA++  +YP EF+AA +     + +K+  +   A+   I+
Sbjct: 772  FASYAFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGIE 831

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            I+ P++N    +F V DNRI + L A+K VG     +I+ +      F  L DF ++VD+
Sbjct: 832  IVAPNINESYSNFTVKDNRIIFGLTAVKNVGERGIDNIVLSREQKGNFTDLSDFFNKVDT 891

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKG 932
              +N+R++ESL+ AGA DC    R ++L   + I    Q  ++N      N+F    +  
Sbjct: 892  SIINKRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNK 951

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-- 990
              S  I     +  +     + E+ + G YFSGHPL+ Y+  L+        + ++    
Sbjct: 952  ESSMDIKYPNINEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTNHHISDIISKESL 1011

Query: 991  ------------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                         G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1012 EGNLVDTVSSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|221133300|ref|ZP_03559605.1| DNA polymerase III subunit alpha [Glaciecola sp. HTCC2999]
          Length = 1138

 Score = 1066 bits (2758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1027 (39%), Positives = 594/1027 (57%), Gaps = 32/1027 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G   +  +LD+      PA+A+TD  N+   ++F  +A   GI+PIIG    +    
Sbjct: 1    MMDGLNKVKPLLDECVNLSMPALALTDQMNMCGLVKFYSEAHNRGIKPIIGTDFWV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q  T  P +  + LL +   GY  +  L+S+ Y          I  +WL E   
Sbjct: 57   ------QDLTQSPNIFRLTLLATNNIGYNNITVLISKAYQRGHVNNRPVIDKAWLAE-HK 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQV 200
             G+I+L+G + G +  A   N+ + A + +  ++  F DR YV L R    +        
Sbjct: 110  AGIIILSGATRGDLGEALLKNNQKAAHQIVEFYQTHFPDRYYVELIRTGRVNENEYIRAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            V  A  + LP+VATN   F++ E++ AH++ +++     +    RP   +P  Y+++  E
Sbjct: 170  VAFAEQYALPVVATNEVCFIASENFAAHEIRVSIHDGYTLEDSRRPKHYSPQQYMRSAEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            MV +F D+PEA+ NTVEIA+RC+  +Q+    LP F   +        E+ L   +  GL
Sbjct: 230  MVELFDDIPEAITNTVEIAKRCNVTVQLGTYFLPNFPTGDL-----STEDFLVKVSKEGL 284

Query: 320  EVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL +       +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N IPVGP
Sbjct: 285  ERRLLKLFPDETDRVEKRGEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFDIDFC DRRDEVI +V  
Sbjct: 345  GRGSGAGSLVAYALDITDLDPLEFDLLFERFLNPERVSMPDFDIDFCMDRRDEVIDHVAQ 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP+DP   +  +A   + 
Sbjct: 405  MYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPSDPGMTL-AKAFDVEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            R  E   AD  V  LL +++ LEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  RLGELENADDDVKELLTMARILEGVTRNAGKHAGGVVIAPTQITDFSPLYCDDEGRNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTK 615
            QF+   +E AGL+KFDFLGL+TLT++Q ++D + +  G +VD++ IP +D  ++ LL   
Sbjct: 524  QFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKEMTGEEVDITQIPLEDPASFKLLQRA 583

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVS 673
             +  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+ + +   + +RK+G+E I  
Sbjct: 584  ESTAVFQLESRGMKDLINRLRPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISY 643

Query: 674  I-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
                  H  +  +L+ T G+I+YQEQVMQIAQ ++GYSL  AD+LRRAMGKK  EEM+KQ
Sbjct: 644  PDANYQHECLQVILEPTYGIILYQEQVMQIAQEMAGYSLGGADLLRRAMGKKKPEEMEKQ 703

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  F  G+  N I   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP  F+
Sbjct: 704  RSVFAEGSKNNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAYFM 763

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGT 847
            AA M+ +MDN +KI     + ++  I I PP +N+    F V +N+   Y + AIKGVG 
Sbjct: 764  AAVMSADMDNTDKIVTLADECQRMGITICPPDLNSGKYKFTVNENQEIVYGIGAIKGVGE 823

Query: 848  TTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 I++A      F  L DFC+++D KK+N+RVLE LV AGA+D  G  R  ++ SL 
Sbjct: 824  GPIEAIIQARNEHGVFSDLFDFCAKIDIKKVNKRVLEKLVLAGAMDNLGPHRAAIMASLQ 883

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
            +  + A    K  +    ++F         +       V +  V  + E+  LG Y +GH
Sbjct: 884  DALEAASQHAKAESFGQGDMFGLLTDADDAEQAFANVPVWSEKVWLDGEKETLGLYLTGH 943

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P++ Y   L         +   T + N + +A +V+  +    +KG R   VT  + +  
Sbjct: 944  PINRYLSELTHYTDSRINDLKPTGKENQVAIAGLVLGVRVMTNKKGRRWAIVTLDDKSGR 1003

Query: 1027 YEANFFP 1033
             +   FP
Sbjct: 1004 IDVRLFP 1010


>gi|119946582|ref|YP_944262.1| DNA polymerase III, alpha subunit [Psychromonas ingrahamii 37]
 gi|119865186|gb|ABM04663.1| DNA polymerase III, alpha subunit [Psychromonas ingrahamii 37]
          Length = 1173

 Score = 1066 bits (2758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1052 (39%), Positives = 597/1052 (56%), Gaps = 38/1052 (3%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            T    K P F+HL+VHS YS+++G   +  ++ K AA   PA+AIT+  N    ++F   
Sbjct: 7    TSISTKQPKFIHLRVHSDYSMVDGVTKIKPLVAKAAALNMPALAITEQTNFCGLVKFYGA 66

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A  AGI+PI+G    +          + +        I  L     GY+ L EL+S+ YL
Sbjct: 67   AHDAGIKPIVGVDFWV----------KSELLADEQFRITALAMNNAGYKNLTELISKAYL 116

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                     I   WL E   +G+I+L+GG  G + +     + ++A + +  +++ F  R
Sbjct: 117  RGHVGGRAVIDQDWLAE-HNQGIILLSGGKDGDLGKVLLKGNHELAVEIIQFYQQYFAQR 175

Query: 182  LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ L R +R  +       +  A  ++LP+VATN  +F  +  Y+AH++ + +     +
Sbjct: 176  YYIELIRTNRLNEETYLHYALDWAEKYQLPVVATNEVVFADKALYDAHEIRVCINQGYTL 235

Query: 241  SQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                RP + + + YL+++ EM  +F+D+PEAL+N+VEIA+RC+  L++    LP F   +
Sbjct: 236  GDNRRPKQYSDEQYLRSQEEMCELFADIPEALKNSVEIAKRCNVTLRLGEYFLPDFPTGD 295

Query: 300  CDDIQKEEENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                     +   + +  GLE RLA    + A         Y QRL  EL+VI  M F G
Sbjct: 296  M-----SITDYFCDVSRKGLEDRLAILFDKNAPEFADIRAPYDQRLQIELDVINTMGFPG 350

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL   LLFERFLNP+R+SM
Sbjct: 351  YFLIVMEFIQWSKDNKIPVGPGRGSGAGSLVAYALKITDLDPLELELLFERFLNPERVSM 410

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFC DRRDEVI +V   YG + V+QIITFG++ +KA +RDVGR L  PY  VD +
Sbjct: 411  PDFDIDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMASKAVIRDVGRVLGHPYGFVDGI 470

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KLIP  P   +S +A A++ R +E       V  L+++ + LEG  R+A  HA G+VI 
Sbjct: 471  SKLIPPTPGMTLS-KAFAEEPRLQERYDGSEEVRALIDMCRTLEGTIRNAGKHAGGVVIS 529

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
               ++   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++Q +LD        
Sbjct: 530  PTTITDFSPLYCDELGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIVQWALDMANAHKHA 589

Query: 596  VD-----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                   +  I   +   + LL    T  +FQLES GM+  +  +QPD  ED+IALV+L+
Sbjct: 590  RGEETLFIEKICLTEPACFELLKRYETTAVFQLESRGMKDLIRRLQPDSFEDMIALVALF 649

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            RPGP+ + +   +  RK+G+E +        HP ++ +L  T G+I+YQEQVMQIAQ+LS
Sbjct: 650  RPGPLQSGMVDNFIERKHGREAVSFPDEKWQHPSLEEILAPTYGIILYQEQVMQIAQVLS 709

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GY+L  AD+LRRAMGKK  EEM KQ+E F  GA  NGI   +A+ IF+L+ KFA YGFNK
Sbjct: 710  GYTLGGADMLRRAMGKKKPEEMAKQRETFEQGAIDNGIDGELAMKIFDLVEKFAGYGFNK 769

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA++SYQT WMKT YP  F+AA M+ +MDN EKI     + +   + + PP VN 
Sbjct: 770  SHSAAYALVSYQTLWMKTFYPSYFMAAVMSADMDNTEKIVTLVAECQSMGLDLGPPDVNE 829

Query: 824  PCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881
                F V  + RI Y + A+KGVG      I+EA  A   F  L DFC+R+D K  N+R+
Sbjct: 830  GLFKFNVDPDLRIIYGIGAVKGVGEGPVDAIIEARTAGGKFIDLFDFCNRIDLKHCNKRI 889

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITL 940
            LE L+ AGALD  G  R  L+++L N  K A   +K  +    ++F      +       
Sbjct: 890  LEKLILAGALDKLGPHRAALMETLPNALKSALQHKKAESFGQSDLFGVLTTDSEEIADKF 949

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                          E+  LG Y +GHP++ Y+  +R        + VA  RG N R+A +
Sbjct: 950  SSVDKWPEKQWLAGEKETLGLYLTGHPINQYETDIRAFHCLKLSDLVANRRGQNSRVAGL 1009

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++S +   T+ G R+G +T  + +   E   F
Sbjct: 1010 ILSMRIMVTKAGKRMGIITLDDKSARMEITVF 1041


>gi|329850615|ref|ZP_08265460.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19]
 gi|328840930|gb|EGF90501.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19]
          Length = 1133

 Score = 1066 bits (2757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 493/1026 (48%), Positives = 681/1026 (66%), Gaps = 23/1026 (2%)

Query: 15   QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +V S+YSLLEGA+   ++      +  PA+AITD  NL+  LEFSQ    +G+QPI+GC 
Sbjct: 2    RVRSAYSLLEGAIKAYDMGKLAHKNGMPAVAITDRCNLYGGLEFSQSCKDSGVQPIVGCA 61

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            L +            +     +P+ V+L    +G+  L +L S  Y+         +   
Sbjct: 62   LPVKGIGGTPTEKWAR-----IPTFVVLCQNEQGWLNLTKLSSIAYVDSDNMDEPHVTWD 116

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR 194
             +     EGL++L+G   GP+D  F  N     +  L +   +FGDR Y+ LQRH G  +
Sbjct: 117  QVT-AHNEGLLLLSGSYDGPVDVLFRQNRPDEGKAALKSMLDVFGDRFYIELQRHEGRPK 175

Query: 195  --YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
                E+ +V+ AY +++PLVATN++ F   + Y AH+ L+ ++ ST +  +DR RVT DH
Sbjct: 176  GSATEAGLVEFAYQNDVPLVATNDAYFAGADMYRAHEALLCISDSTFMGIEDRRRVTKDH 235

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            + K  + M  +F+DL EA +NT+EIARRC+F++    PILPRF         + E+ EL 
Sbjct: 236  WFKPAAAMRELFADLTEACDNTIEIARRCAFLVNKRDPILPRFDTGAG----RNEDEELA 291

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             +A  GL++RL Q  +A     +DY  RL+ E+ VI +M F GYFLIV+DFI+W K + +
Sbjct: 292  WQAREGLKMRLKQVKLA--CPEEDYWARLEREIGVIQKMGFPGYFLIVSDFIKWGKSHGV 349

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
            PVGPGRGSGAGS+ A+ALTITD+DPLRF LLFERFLNP+R+SMPDFDIDFCQ+RR+EVI 
Sbjct: 350  PVGPGRGSGAGSLVAWALTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQERREEVIS 409

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QA 491
            YVQ+KYG +RVAQIITFG+LQA+A LRDVGR +Q+P  QVDRLCK++PN+PA+P +L QA
Sbjct: 410  YVQHKYGRDRVAQIITFGTLQARAVLRDVGRVMQLPLGQVDRLCKMVPNNPANPTTLAQA 469

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
            I  + R REAR  D  V  LL+ + KLEGLYR+ASTHAAGIVIGDRPL++LVP+YRD RS
Sbjct: 470  IEIEPRLREARDDDEQVKNLLDTALKLEGLYRNASTHAAGIVIGDRPLTELVPLYRDPRS 529

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            D+P TQFNMKW+E AGL+KFDFLGLKTLT+L ++  +L +RGV ++ S++P DD  TY L
Sbjct: 530  DIPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAERYLKKRGVDINFSILPLDDTATYEL 589

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            L +  ++G+FQLES GMR  L  ++   +E+I AL+SLYRPGPIDNI  Y +RK G+ +I
Sbjct: 590  LASGQSIGVFQLESQGMRDTLRKLRCSSLEEITALISLYRPGPIDNIDTYVDRKFGRMEI 649

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              +HP ++P+LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKK KEEMD QK R
Sbjct: 650  DMLHPSLEPVLKETYGVIIYQEQVMQIAQVLSGYSLGEADLLRRAMGKKKKEEMDLQKVR 709

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            F++GA + G+ +  +  IFEL+ KFA YGFNKSHAAAYA ISYQT ++K ++PVEF AAS
Sbjct: 710  FMTGAKEKGVPEAQSDFIFELVNKFAGYGFNKSHAAAYAFISYQTGYLKANHPVEFFAAS 769

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
             +L++ N +K+  F QDAR+F + I+PP +N    DF V +  + Y+L AI+ VG    +
Sbjct: 770  FSLDIANTDKLAVFYQDARRFGVPIVPPDINRSMADFDVENGELLYALGAIRNVGFEAMQ 829

Query: 852  HIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
             +++A  +   F  L DF  R+D K +NRR +E+L  AGA D    +R Q++ + D +  
Sbjct: 830  SVVQAREEGGKFTDLFDFLERIDPKAVNRRAIENLAKAGAFDSIHPNRAQIVAAADMLIA 889

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            YAQ V   R +   ++F     +   +  L K +      R + E   +GFY SGHPL  
Sbjct: 890  YAQSVAAERASSQVSLFGSTDAS---RPRLPKVAASAGPERLDEELAAIGFYLSGHPLQD 946

Query: 971  YKPILRKMGIKGYEESVAT-IRGNNI-RLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
               + ++  I  Y E+++  + G++  R+A +V  +Q++     G +  +VT S+P+ EY
Sbjct: 947  MLDVFKRRKITLYAEAMSLALEGHDAFRMAGIVRRRQERAAAGSGEKFAFVTLSDPSGEY 1006

Query: 1028 EANFFP 1033
            E   FP
Sbjct: 1007 EV-LFP 1011


>gi|83952291|ref|ZP_00961023.1| DNA polymerase III subunit alpha [Roseovarius nubinhibens ISM]
 gi|83837297|gb|EAP76594.1| DNA polymerase III subunit alpha [Roseovarius nubinhibens ISM]
          Length = 1163

 Score = 1066 bits (2756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 514/1057 (48%), Positives = 684/1057 (64%), Gaps = 50/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL++H+ YSLLEGA+ L  +    A    PA+A+TD+NN+F+ALEFS  A  
Sbjct: 1    MSTAPRFIHLRLHTEYSLLEGAMRLKKLPGLCANMDMPAVAVTDSNNMFAALEFSVSAQG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D    +              +  +VLL     GY+ L++L S +YL   
Sbjct: 61   AGVQPIMGCQVDFHYDE--------AAGDEAIAPLVLLAQNEAGYENLMKLNSCLYLRGD 112

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     + +  L E   EGLI LTGG  GP+ R      + VAE  +    K +  RLY+
Sbjct: 113  G-SLPHVIIEEL-ERHAEGLICLTGGPDGPVGRLLQAGRAPVAEALVARLAKAYPTRLYI 170

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       +R  E   V++AY   LPLVATN+  F ++E +EAHD ++ VA   
Sbjct: 171  ELQRHPGENGQPEAERLTERGHVEMAYAMGLPLVATNDVYFPNKEMFEAHDAMLCVAEGA 230

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q   R R+TP+HYLK   EM ++F+DLPEALENTVEIARRC+F      PILP+F +
Sbjct: 231  YVDQSGPRRRLTPEHYLKTPQEMATLFADLPEALENTVEIARRCAFGCYRRDPILPKFAD 290

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E          ELR  A AGL+ RLA   I      +DY++RLDFEL +I  M F GYF
Sbjct: 291  DEV--------AELRRMANAGLQARLA--VIPHAASVEDYQKRLDFELGIIEGMGFPGYF 340

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 341  LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 400

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ+KYG +RV QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 401  FDIDFCMDRREEVIRYVQDKYGRDRVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 460

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+ QA+A + R RE    +  V+RLL    K+EGL R+ASTHAAG+VIGD
Sbjct: 461  MIPVEGVKPVSIEQALAQEERLREEARREEVVERLLNYGMKVEGLLRNASTHAAGVVIGD 520

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA------ 590
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D +       
Sbjct: 521  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAIDQIKGGGRHL 580

Query: 591  ------------QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                          G   D+  IP DD +TY L     T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 581  HQAADGATLYEPPEGAVDDIGQIPLDDAKTYELYARAKTVAVFQVESSGMMDALKRMKPT 640

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG ++  S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 641  CIEDIVALVALYRPGPMENIPTYCEVKNGVKERESVHPLIDHILEETQGIIVYQEQVMQI 700

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKIKE MD ++ +F  GA++NG+ K  A  +F+LL KFA+
Sbjct: 701  AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFAN 760

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ ++   +  +
Sbjct: 761  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVKKGLGLDWL 820

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            PP VN     F V D  ++Y L A+K VG    R I +A  DKPF +L DF  RVD KK+
Sbjct: 821  PPCVNRSEARFIVRDGVLHYGLGALKNVGVDAMRLITQARGDKPFATLYDFARRVDLKKI 880

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE L  AGA D    +R ++  SL+ +  Y+  + + R +   ++F  E G    +
Sbjct: 881  GKRPLEMLARAGAFDELDRNRRRVFDSLEGLMNYSAAIHEQRNSNQVSLFG-EAGDDLPE 939

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--I 995
              +        + R   E R +GFY SGHPLD Y   L++  +K  +E     RG     
Sbjct: 940  PRIMPVEDWLPAERLTEEFRAVGFYLSGHPLDDYMAALKRKDVKTLDEVEMLARGGACIA 999

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +LA +V  +Q++K+ +G+R  +V  S+    YE   F
Sbjct: 1000 KLAGVVAGRQERKSARGNRFAFVQLSDTTGGYEVTMF 1036


>gi|258543019|ref|YP_003188452.1| DNA polymerase III subunit alpha [Acetobacter pasteurianus IFO
            3283-01]
 gi|256634097|dbj|BAI00073.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-01]
 gi|256637157|dbj|BAI03126.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-03]
 gi|256640209|dbj|BAI06171.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-07]
 gi|256643266|dbj|BAI09221.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-22]
 gi|256646321|dbj|BAI12269.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-26]
 gi|256649374|dbj|BAI15315.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-32]
 gi|256652360|dbj|BAI18294.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-01-42C]
 gi|256655418|dbj|BAI21345.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-12]
          Length = 1139

 Score = 1066 bits (2756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 488/1032 (47%), Positives = 661/1032 (64%), Gaps = 26/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F+HL+VHS+YSL +GA+ + +I         PA+ I D+ NLF ALEFSQ    +GIQP
Sbjct: 5    DFIHLRVHSAYSLSQGAIRVPDIAGLAKEMYMPAVGIADSGNLFGALEFSQYCTKSGIQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            II           + +  +   P      +VLL     G   L  L S  +         
Sbjct: 65   II--------GSQIGLPARNDKPGAPAEPVVLLAQNEAGLANLQFLSSAGFQNSDP-ADP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + L  L E   EGL++LTGGS GP+ +      ++ AEK L    + FGDRL V L RH
Sbjct: 116  FVSLDLLCEKA-EGLLLLTGGSRGPLFQMLAEGQTEDAEKWLARVHEAFGDRLIVELHRH 174

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                ++  E  V+ LA    LPLVATN   F + E YEA D L+ +A    +++KDR RV
Sbjct: 175  GLAIEKAVEPGVLTLADRFGLPLVATNECFFPTPEMYEAQDALLCIAQGRTMAEKDRFRV 234

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            TP+H+ K    M ++F+DLP+A +NT+EIARRC+  ++   P+LP   +         E+
Sbjct: 235  TPEHWFKPPEMMRALFADLPDACDNTLEIARRCAIKVETRKPLLPVCPKVRE---GATED 291

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR  A  GLE R   G        + Y++RL FEL++I++M F GYF+IVADFIQWAK
Sbjct: 292  ETLRAMAWEGLERR-MSGMKLDAETIEKYKERLRFELDIISKMGFPGYFMIVADFIQWAK 350

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             + IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQDRRD
Sbjct: 351  AHGIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQDRRD 410

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV+ +YG +RVAQIITFG LQA+AA+RDVGR L +PY  V+R+ +LIPN+PA PV+
Sbjct: 411  EVIAYVRREYGADRVAQIITFGKLQARAAVRDVGRVLGLPYGMVNRVAELIPNNPAKPVT 470

Query: 489  LQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L+ AIA + + +E R  D ++ RLLEI+Q+LEGL+RHASTHAAG+VIGDRPL QLVP+YR
Sbjct: 471  LKEAIAGEPKLQEMRDNDEALRRLLEIAQQLEGLFRHASTHAAGVVIGDRPLVQLVPLYR 530

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D +SD  VTQ+NMK++E+AGL+KFDFLGL TLT+L++ +DF+ + G  VDLS IP DD +
Sbjct: 531  DPKSDTLVTQYNMKFVEQAGLVKFDFLGLTTLTILKRGVDFIRRMGKDVDLSHIPLDDPK 590

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L    T G+FQ E +GMR  L+ M+P  IED+IA V+LYRPGP+ NI  Y  RK+G
Sbjct: 591  TYEMLGRGDTAGVFQFEGAGMRDVLKQMRPTRIEDLIAAVALYRPGPMANIPDYCRRKHG 650

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E     H  I  +L+ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+ EMD 
Sbjct: 651  -EAWEPPHEEIRDILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIRSEMDH 709

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+E F  GA+K GI +  AV +F+L+AKFADYGFNKSHAAAYA +SYQTAWMK ++PV F
Sbjct: 710  QREIFTEGATKRGIDRDKAVEVFDLMAKFADYGFNKSHAAAYAFVSYQTAWMKANHPVAF 769

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAI 842
            LAA M+L  +  EK+    Q+A + +I ++PP++N    DF V     G   I Y+LAAI
Sbjct: 770  LAACMSLARERTEKLAALRQEAERMHIAVLPPNINKSEADFSVEEQPDGTYAIRYALAAI 829

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            K VG      ++EA  +KPF +L DF  R+D K +NR  LE+L  AGA +C   +R ++ 
Sbjct: 830  KKVGYGAMESLVEARGEKPFKNLADFAIRIDPKHINRMQLENLAKAGAFECIDKNRARVF 889

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            +S D I + A    +   +    +F        + + L +        R   E   +GF+
Sbjct: 890  RSADVILRRAHSQAQEAASGQIGLFGGPGEV--EPLRLVEGHDWPEFERLAMEAEAIGFH 947

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             + HPLD Y  +LR++G+    + +      G  +++A  VV K+++ TR G+++ WV  
Sbjct: 948  MTAHPLDAYGSVLRRLGVTRTSQLLTAAELGGGRVKIAGCVVDKKERPTRTGNKMAWVRL 1007

Query: 1021 SEPAKEYEANFF 1032
            S+ +   E   F
Sbjct: 1008 SDASGGCEVTVF 1019


>gi|315924608|ref|ZP_07920827.1| DNA-directed DNA polymerase III alpha subunit [Pseudoramibacter
            alactolyticus ATCC 23263]
 gi|315622138|gb|EFV02100.1| DNA-directed DNA polymerase III alpha subunit [Pseudoramibacter
            alactolyticus ATCC 23263]
          Length = 1178

 Score = 1066 bits (2756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1055 (38%), Positives = 587/1055 (55%), Gaps = 48/1055 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VHS YSLL+G   +++ +         A+A+TD   LF  +EF +   A GI P
Sbjct: 4    SFTHLHVHSEYSLLDGFGRISDYVQTAKEMGMNALALTDHGVLFGGIEFYKACVARGINP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +  L       +       ++LL    EGY+ L ++VS+ ++ D      
Sbjct: 64   IIGCEVYVAPRTLLDKEAGKDS---RPYHLILLAENNEGYRNLSKIVSKGFI-DGFYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI    L+    EG+I L+   +G I RA        AE    T+  +F  D  ++ +Q 
Sbjct: 120  RIDHDTLRRY-REGIICLSACIAGEIPRAVLEEQPARAEALCETYIDIFGKDHFFLEIQD 178

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR   +      +  LA  + + L ATN+  ++ ++DYEAHDVL+ +   + V + DR R
Sbjct: 179  HRLSKEAKVREFLFHLADKYGIGLAATNDCHYVRQDDYEAHDVLLCIGTGSTVDETDRMR 238

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  YLK+  EM ++F D PEAL NT +IA RC     + +  LP+F   E      E
Sbjct: 239  YANDQFYLKSPEEMAAMFPDHPEALANTQKIADRCHVTFDLESAHLPKFELPEG---YTE 295

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + +R+   AGL  R             + R+R+D+EL  I  M F  YFL+V DFI +
Sbjct: 296  AGDYVRHLCEAGLAKRY-------DTITPEIRERMDYELKTIHTMGFDDYFLVVWDFIHY 348

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK +NIPVGPGRGS AGS+ AYAL IT +DPL+++LLFERFLNP+R++MPD D DFC +R
Sbjct: 349  AKTHNIPVGPGRGSAAGSLAAYALDITTLDPLQYNLLFERFLNPERVTMPDIDCDFCYER 408

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RVAQIITFG++ A+ A+RDVGR L +PY+QVD++ K IP  P   
Sbjct: 409  RQEVIDYVIRKYGKDRVAQIITFGTMAARGAVRDVGRVLGIPYAQVDKVAKEIPMRPGQS 468

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            VS+ +AI ++   ++   +D  V RLL +S+K+EGL RHASTHAAG+VI D PL++ VP+
Sbjct: 469  VSIHEAIEENPDLKQMADSDAEVRRLLAMSEKMEGLARHASTHAAGVVISDAPLTEYVPL 528

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
            YR    D   TQ+ M  +E  GLIK DFLGL+TLT++  ++  + + RG+ VD+  I   
Sbjct: 529  YR--NGDAITTQYTMNLLEDLGLIKMDFLGLRTLTVIADAVANIQESRGIAVDIDHIDMH 586

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D   Y ++ +   LG+FQLES GM   +  +QP   EDIIA +SLYRPGP+D I  Y   
Sbjct: 587  DAGVYEMIASGDCLGVFQLESRGMIAFMRELQPQTFEDIIAGISLYRPGPMDQIPRYIAN 646

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K   E I   H  + P+L  T G ++YQEQVMQI + L+G+S+  +D++RRAM KK  E 
Sbjct: 647  KKDPEHIAYTHEALRPILNVTYGCMVYQEQVMQIFRDLAGFSMGRSDLVRRAMSKKKSEV 706

Query: 725  MDKQKERFISGA------------SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            MD + E FI G                GI +  A  I+E +  FA Y FNKSHAAAYAVI
Sbjct: 707  MDAEGEVFIHGERDTDGQVVVPGAVAKGIPEAAARRIYEEMKDFAKYAFNKSHAAAYAVI 766

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTAW+K HYP EF+AA M+  MDN +KI ++  + ++  I+++ P VN     F V  
Sbjct: 767  AYQTAWLKRHYPAEFMAALMSSVMDNEKKISQYIDNCKRRGIRVLLPDVNISRRKFSVEI 826

Query: 833  NRI-----YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            N          L AIKG+G      I+ A   +  F    DFC +VDS  +N++   +L+
Sbjct: 827  NADGRENVRMGLGAIKGLGDKPIAAIVNARQTEGAFTGFRDFCEKVDSHAVNKKAAANLI 886

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGA D  G  R +++   D I +     +++R +   ++    +       T  +    
Sbjct: 887  LAGAFDFLGIDRARMVLGSDLIVQQVAEEKQDRLSGQMSLLDMGELNAYKGDTFPEAPPF 946

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK------GYEESVAT--IRGNNIRLA 998
            + + +   E+ VLG Y SGHPL+ Y  IL             YE+ +A+    G  + + 
Sbjct: 947  SKAEKLAREKEVLGLYVSGHPLEHYVGILSSETNLNSGMMDSYEDLLASGIPDGGRVTVG 1006

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +V   + + T+  +++ ++T  +     E   FP
Sbjct: 1007 GLVDQLKVQLTKTNAQMAFLTLEDLYGRMEVVVFP 1041


>gi|83943739|ref|ZP_00956197.1| DNA polymerase III subunit alpha [Sulfitobacter sp. EE-36]
 gi|83845419|gb|EAP83298.1| DNA polymerase III subunit alpha [Sulfitobacter sp. EE-36]
          Length = 1177

 Score = 1066 bits (2756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 505/1068 (47%), Positives = 687/1068 (64%), Gaps = 58/1068 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++P F+HL+ HS YSLLEGAL L  + D       PA+A+TDTNN+F+ALEFS     
Sbjct: 1    MAQAPRFIHLRTHSEYSLLEGALRLKKLPDLCKGADMPALALTDTNNMFAALEFSVAMAG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+D+           G+ P    P +VLL  +  GY+ L++L S +Y+ D+
Sbjct: 61   AGVQPIIGCQVDLAY----VKVQPGEKPRDPAP-VVLLAQSEAGYENLMKLNSCLYI-DK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G    ++ L  L E    GLI LTGG+ GP+ +         AE  +      F DRLYV
Sbjct: 115  GGALPQVTLEEL-EALNGGLICLTGGAGGPVGQLLQGGQRPAAEALMARLHGAFADRLYV 173

Query: 185  NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G D      +  E   V++AY   +PLVATN+  F   + YEAHD L+ +A   
Sbjct: 174  ELQRHPGEDGQPVAEQLTERGFVEMAYDMGIPLVATNDVYFPKADMYEAHDALICIADGA 233

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q+  R R+T  HY K+++EMV++F+DLPEA+ENTVEIA+RC+F+     PILP+F +
Sbjct: 234  YVDQQHERRRLTAQHYFKSQAEMVTLFADLPEAIENTVEIAKRCAFMAYRRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E +        EL+ +A  GL+ RL    I      ++Y +RLDFEL +I  M F GYF
Sbjct: 294  DEIE--------ELKRQAHEGLKNRLK--VIPHATTVEEYEKRLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK NNIPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKDNNIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIQYVQRKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+ +A+AD+ R RE    +  V RLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALADEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D +   G   
Sbjct: 524  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKSSGRHL 583

Query: 596  -----------------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                              D++ IP DD  +Y L  +  T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  HVAADGTELFEPPEGLIDDIATIPLDDEASYKLYASAKTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG+ +  S+HP ID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPVYCEVKNGQRERESVHPSIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  GA  NG+ K  A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMANGVDKKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R +  +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKRLELPWV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA----DKPFDSLEDFCSRVD 873
            PP VN     FKV +  + Y+L A+K VG    + I E       DKPF +L D   RVD
Sbjct: 824  PPCVNRSDATFKVVEGALVYALGALKNVGVEAMKLITEGRKVDGVDKPFATLFDLARRVD 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             K++ +R LE L  +GA D    +R ++ QSLD +  Y+  + + + +   ++F  E G 
Sbjct: 884  LKRVGKRPLEMLARSGAFDQLDNNRRRVWQSLDGLVSYSAAIHEQKASNQVSLFG-EAGD 942

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK------GYEESV 987
               +  +       ++ R   E + +GFY SGHPLD Y   +++            +E  
Sbjct: 943  DLPEPRIVPCDDWEAAERLTEEFKAVGFYLSGHPLDDYMGPMKRKSATGGVPFLTLDELT 1002

Query: 988  AT--IRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++G  N RLA +V  +Q++K+ +G+R  +   S+P   YE   F
Sbjct: 1003 EKVSVKGAMNARLAGIVAGRQERKSARGNRFAFAQLSDPTGAYEVTLF 1050


>gi|160931723|ref|ZP_02079117.1| hypothetical protein CLOLEP_00555 [Clostridium leptum DSM 753]
 gi|156869368|gb|EDO62740.1| hypothetical protein CLOLEP_00555 [Clostridium leptum DSM 753]
          Length = 1203

 Score = 1066 bits (2756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1047 (36%), Positives = 574/1047 (54%), Gaps = 41/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL+GA  +N ++D   +    ++AITD  +++  ++F + A A GI P
Sbjct: 51   GFVHLHLHTEYSLLDGACRINELIDTAVSQGAASVAITDHGSMYGVVDFYKAAKAKGIHP 110

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +   K T++          +VLL     GYQ L  +VS  ++ +      
Sbjct: 111  IIGCEVYVSPR---KHTDKIHEFDSENRHLVLLCKNNTGYQNLAAMVSEAWI-NGFYNKP 166

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L E  +EGLI L+   +G I RA        A+++ L + ++F     Y+ LQ 
Sbjct: 167  RVDDEML-ETRSEGLIALSACLAGDIPRALVRGDYDAAKEKALKYNRIFGQGNFYLELQD 225

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++      ++ L+    +PLV TN+  ++ +ED + H VL+ +  +  +   +   
Sbjct: 226  HGIREQKQIAPMLIALSQETGIPLVVTNDCHYIHKEDSKMHQVLLCIQTNHTLEDDNNLE 285

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  Y K   EM S+F  +PEA +NTV+IA  C+   +     LP F   +  D    
Sbjct: 286  FGSDEFYFKTEEEMRSLFPQVPEACDNTVKIAEMCNVEFEFGNTKLPHFEVPDGQD---- 341

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                 RN+   G E      A          R+RL++ELN I  M +  Y+LIV DFI++
Sbjct: 342  HFEYFRNQCYEGFEKYYGTNADP------SVRERLEYELNTIKTMGYVDYYLIVHDFIRY 395

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGSGAGS+ AY + IT IDP++++LLFERFLNP+R+SMPDFDIDFC +R
Sbjct: 396  AKSVGIPVGPGRGSGAGSIAAYCIGITGIDPIKYNLLFERFLNPERVSMPDFDIDFCYER 455

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG + VAQIITFG++ A+ A+RDVGRA+ MPY+ VD + KL+P +    
Sbjct: 456  RQEVIDYVVRKYGADHVAQIITFGTMAARGAIRDVGRAMAMPYAAVDVIAKLVPMELGIT 515

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+      +    ADP    L+++++K+EG+ R ASTHAAG+VI ++P+S  VP+ 
Sbjct: 516  LE-RALKVSPELKARYDADPQTRELIDMARKVEGMPRQASTHAAGVVITEQPVSFYVPLA 574

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            +   +D  VTQ+ M  +E+ GL+K DFLGL+TLT+L  +   + ++     ++ +P DD 
Sbjct: 575  K--NNDAVVTQYTMTTLEELGLLKMDFLGLRTLTVLSDAEKMVRRKEPDFSIAHVPDDDP 632

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y +L    T G+FQ ES GM+  L  + P  +ED+IA++SLYRPGP+D+I  Y   ++
Sbjct: 633  AVYRMLAEGSTNGVFQYESGGMKNVLVQLGPQSLEDLIAVISLYRPGPMDSIPKYIENRH 692

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E++  +HPL+  +L  T G I+YQEQVMQI + L+GYSL  AD++RRAM KK    M+
Sbjct: 693  HPERVTYLHPLLAGILDVTYGCIVYQEQVMQIFRTLAGYSLGRADIVRRAMSKKKHSVME 752

Query: 727  KQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            K+++ FI             G  + G+S+ IA  IF  +  FA Y FNKSHA AYA +SY
Sbjct: 753  KERKIFIEGLVGGDGTVEVEGCIRRGVSREIAEKIFAEMESFASYAFNKSHATAYAWVSY 812

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA+MK HYP EF+AA +T  +DN  K+  + ++     IQ++PP+VN     F V    
Sbjct: 813  QTAYMKYHYPKEFMAALLTSVLDNANKVAGYIEECSNMGIQVLPPNVNESGNGFTVTHGS 872

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L AI+ +G      ++E       + S   FC R+  +++NRR LESL+ +GALD 
Sbjct: 873  IRFGLLAIRNLGRGFIARLLEEREQGGKYTSFYQFCKRLHGREMNRRTLESLIKSGALDG 932

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
             G +R Q+L   + +       +K   +     F        D+I         +S    
Sbjct: 933  LGANRRQMLAVAETVLDNLDAEKKQNLDGQIGFFEAMGQAPRDEIAFPDVEEFPASELLS 992

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-------IRGNNIRLAAMVVSKQQ 1006
             E+ + G Y SGHP+  Y     K+      E             G N+ L  ++ S + 
Sbjct: 993  MEKEITGMYLSGHPMAAYAQAAAKLNAAKIGEIAEAHGEYDRYHDGTNVTLLCIINSVRL 1052

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+  S + +V   +     E   FP
Sbjct: 1053 KTTKNNSTMAFVQIEDLYGGIEMLVFP 1079


>gi|219668439|ref|YP_002458874.1| DNA polymerase III subunit alpha [Desulfitobacterium hafniense DCB-2]
 gi|219538699|gb|ACL20438.1| DNA polymerase III, alpha subunit [Desulfitobacterium hafniense
            DCB-2]
          Length = 1190

 Score = 1065 bits (2755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1040 (37%), Positives = 594/1040 (57%), Gaps = 36/1040 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YSLL+GA  +  ++ K      P++AITD   ++  ++F +    AGI+P
Sbjct: 2    GFVHLHVHTEYSLLDGAARIEKLVKKAVELGMPSVAITDHGVMYGIIDFYKACKKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +      + T +          +VLL    EGY+ LI+LVS  ++        
Sbjct: 62   IIGCEVYVAPH---RRTEKVPGRDDNNRHLVLLAENEEGYKNLIKLVSMAHIEG-FYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L+   + GLI L+   +G +      N  + A +  L ++++F     ++ +Q 
Sbjct: 118  RVDKDILRR-HSRGLIALSACLAGEVSEYLLNNQLETAVESALEYEEIFGKGNFFLEVQD 176

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ R  + + ++     +P+VATN+  ++++ED    DVL+ +     ++   R  
Sbjct: 177  HGLEEQQRVNTGMFEVQRRTGIPMVATNDVHYVNKEDAFIQDVLICIQTGKNLTDASRMS 236

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + + +  K+ +EM  +F + PE LENT  IA RC    +     LP F   E       
Sbjct: 237  FSSEEFFLKSEAEMNLLFGEHPEILENTARIAERCQVDFKFGDNYLPVFEVPEG----YT 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  LR K      +              + ++RLD+EL VIA+  FSGYFLIVADF Q+
Sbjct: 293  LDTYLRKKCYEAFPLFYPN-------QRTEEKERLDYELGVIAQTGFSGYFLIVADFCQY 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++N I VGPGRGS A S+ AY + IT ++P++  LLFERFLNP+R+SMPD DIDF  D 
Sbjct: 346  ARQNGIAVGPGRGSAAASMVAYLMGITTVEPMQHDLLFERFLNPERISMPDIDIDFDPDG 405

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+ VI YV  KYG ++V QIITFG++ AKAA+RDVGR L +P ++VD++ K IP+D    
Sbjct: 406  RERVINYVMEKYGADKVCQIITFGTMGAKAAIRDVGRVLGIPLARVDKVAKAIPSDLGMT 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+A      +    D  + +L EI++ LEG+ RHASTHAAG+VI    L   +P+ 
Sbjct: 466  LE-KALAVSPDLVKLLEEDGEIKKLYEIARSLEGMPRHASTHAAGVVIAKDALDTYIPLQ 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
            R       +TQF MK +E+ GL+K DFLGL+ LT++Q++L  +   RG  +DL  +P DD
Sbjct: 525  RTSDGGFTMTQFPMKTVEEVGLLKMDFLGLRNLTIIQETLKQIEGNRGEVLDLQSLPLDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T+ +L+   + G+FQLES GMR  L+ ++P C EDIIA+V+L+RPGP++ I  +  RK
Sbjct: 585  KATFDMLSLGNSTGVFQLESGGMRNVLKELKPSCFEDIIAVVALFRPGPMEQIPEFIRRK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G   +  +HPL++P+L+ T GVI+YQEQVMQIA+ L+GYSL  AD+LRRAMGKK KE M
Sbjct: 645  HGGN-VSYLHPLLEPILRSTYGVIVYQEQVMQIARDLAGYSLGRADLLRRAMGKKKKEIM 703

Query: 726  DKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            +++++ FI             GA K G+++  A  IF+L+AKFA+YGFNK HA AYAVIS
Sbjct: 704  EEERQSFIYGLQSPSGEEIIPGALKLGLTEKEAAEIFDLMAKFAEYGFNKGHATAYAVIS 763

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K +YP+EF AA ++  M + +K+  +  +ARQ  I+I+PP V    V F +   
Sbjct: 764  YQTAYLKANYPLEFNAALISTVMSSADKVSFYIHEARQSGIEILPPDVQYSQVGFSIEGR 823

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I + L AI+ VG      I+EA  +  FDSL DFC RVD+K LN+RVLESL+ AGA   
Sbjct: 824  GIRFGLGAIRNVGVNVVEKIIEARQEGLFDSLYDFCIRVDAKVLNKRVLESLLKAGAFSL 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R Q L +LD+I + AQ  ++++ +   ++F        + I L      +      
Sbjct: 884  LCK-RAQGLLALDSILEIAQQRQRDKESGQISLF-DFGDDLDEGIELPDVEEYSPRELLT 941

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  LG Y SGHPL+   P L+    +     +       + L  +V   +   T++G 
Sbjct: 942  MEKEYLGLYLSGHPLESVLPKLKNAVSEDILTCLEGDEEKKVILGGIVTGYRTTVTKRGE 1001

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             +      +     +   FP
Sbjct: 1002 MMASFVLEDLTGTIDVLVFP 1021


>gi|304438918|ref|ZP_07398841.1| DNA polymerase III alpha subunit [Peptoniphilus duerdenii ATCC
            BAA-1640]
 gi|304372584|gb|EFM26167.1| DNA polymerase III alpha subunit [Peptoniphilus duerdenii ATCC
            BAA-1640]
          Length = 1140

 Score = 1065 bits (2755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1043 (35%), Positives = 587/1043 (56%), Gaps = 45/1043 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G+  +  +  K+      +IAITD  N+F A++F +     G++PI
Sbjct: 2    FTHLHVHTEYSLLDGSTRIKELPKKVKELGMDSIAITDHGNMFGAIQFYKACKDEGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +   +        K        ++LL    +GY+ L+++VS+ ++ D      R
Sbjct: 62   MGCEVYVSSTNLNVKDRTSKR-----YHLILLAENNKGYENLMKIVSKGWV-DGFYYKPR 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            +    L+E  +EG+I L+    G + R       + A K  L ++ +F  D  ++ +Q H
Sbjct: 116  VDKKVLREY-SEGIIALSACLQGEVQRKILDRDFEAARKAALEYQDIFGKDNFFLEVQNH 174

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++      +  L+    +PL ATN+  +L + D +AHDVL+ +   T++S   R + 
Sbjct: 175  GIREQLEANIHLRNLSGELGIPLAATNDVHYLEKSDAKAHDVLLCIQTGTILSDGKRMKF 234

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM     D  +A+ENT EIA+RC+  ++ H   LP+F   +        
Sbjct: 235  PSDEFYLKSEDEMKEALPDFVDAIENTYEIAKRCNVTIEFHNYHLPKFDVPDG----YTN 290

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L+  A+ GL  +            +   +R +FELN I  M ++ YFLIV DFI +A
Sbjct: 291  DEYLKELALKGLREKYEN-------LDEKIMERFNFELNTIISMGYTDYFLIVWDFINYA 343

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N I VGPGRGS AGS+ +Y L I D+DPLRF LLFERFLNP+R+SMPD DIDFC +RR
Sbjct: 344  KENGIMVGPGRGSAAGSIISYGLGIIDVDPLRFDLLFERFLNPERVSMPDIDIDFCYERR 403

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI YV  KYG + VAQI TFG++ A+ A+RDVGR + + YS+VD++ K+IP +    +
Sbjct: 404  EEVIEYVNRKYGKDHVAQIATFGTMAARGAIRDVGRVMDISYSKVDQVAKMIPQELNITI 463

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            + +AI      R A   DP V  +++ + K+EGL RH STHAAG+VI +R ++  VP+ R
Sbjct: 464  N-KAIEMSEDLRNAMRDDPQVKGIIDTALKVEGLPRHMSTHAAGVVISNRDVTDYVPLAR 522

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                +  +TQFNM  +E+ GL+K DFLGL+TLT+++ +++ + +   +++D     FDD 
Sbjct: 523  --TDEQLLTQFNMTELEELGLLKMDFLGLRTLTVIRDAVNMVKENYGIEIDFKDQGFDDK 580

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            E   L     TLGIFQ ESSGMR  L+ ++ D  ED++A  +L+RPGP+  I  +   K+
Sbjct: 581  EVIDLFKHANTLGIFQFESSGMRAFLKELKADAFEDLVAANALFRPGPMSQIPRFIESKH 640

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
               KI  IHP ++P+L  T G I+YQEQVMQI Q + GYSL  AD++RRAM KK    M+
Sbjct: 641  DPSKISYIHPSLEPILNVTYGCIVYQEQVMQIVQQIGGYSLGRADLVRRAMSKKKMSVME 700

Query: 727  KQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +++  FI G               NG+ +  A  I++L+  FA+Y FNKSH+ AY+V++Y
Sbjct: 701  EERNNFIYGLKDEEGNVLIKGALANGVDEKSANEIYDLMIDFANYAFNKSHSVAYSVVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +TA++K +YP EF+A+ ++  M + +++  + ++ ++ NI+++PPSVN     F V ++ 
Sbjct: 761  RTAFLKRYYPKEFMASQISSFMSSPKQVALYAEELKRLNIKLLPPSVNESRNKFTVEEDA 820

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR---VDSKKLNRRVLESLVFAGAL 891
            + + L A+K VG      I+EA  +K F S+ DF  R   V+S  +N+R LESL+ AGA 
Sbjct: 821  VRFGLKAVKNVGDNFIDAIVEARKEKKFTSMTDFIRRVVEVNSSAINKRALESLIKAGAF 880

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R + L   + I +  Q   KN      ++F  +    +D+  L      +   +
Sbjct: 881  DFLPGNRAKYLAVYERILESVQSGIKNNVKGQFSMFNEK----TDEDDLPNLKDFDEKTK 936

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTR 1010
               E  +LG Y SGHPL+ Y+  +         +       G N++++ ++  K+   T+
Sbjct: 937  LNMEYEMLGIYASGHPLNPYRNAIENNSSTNTSKIFENPVNGQNVKISGIIKQKRNLITK 996

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
                + + T  +     E   FP
Sbjct: 997  NNKMMCFATLEDFFGTIELIVFP 1019


>gi|187918442|ref|YP_001884005.1| DNA polymerase III subunit alpha [Borrelia hermsii DAH]
 gi|119861290|gb|AAX17085.1| DNA polymerase III alpha subunit [Borrelia hermsii DAH]
          Length = 1147

 Score = 1065 bits (2755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1035 (37%), Positives = 596/1035 (57%), Gaps = 23/1035 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++    FVHL VHS YSLL+GA  + +I+ K        IA+TD  NLF A+ F ++A  
Sbjct: 1    MDLKVDFVHLHVHSDYSLLDGAAKITDIVAKAKKCNMSHIALTDHGNLFGAVRFYREAKR 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  +      K   +          ++LL     GY+ L++L S  YL   
Sbjct: 61   VGIKPIIGIEAYMSSIS--KHIKKNDEFGKPYYHLILLAKNELGYKNLLKLTSISYLEG- 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 R+    +++  +EGLI  +    G I +    N    A+  +L FK +FGD  Y+
Sbjct: 118  FYYRPRMDKGDIEKY-SEGLICTSACIGGIIPQLILANRFDDAKNEILWFKSIFGDDFYL 176

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH    +     +++  +    +PL  +N+S +++  D  A D+++ +      S  
Sbjct: 177  ELQRHGIKQQDIVNEKLISYSRELNVPLTVSNDSHYVNRGDATAQDIIVCIGTGAKRSDP 236

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRFIEKECD 301
            +R    T + Y+K++ EM  +F DLPEAL NT++IA +C+ F ++   PI P +      
Sbjct: 237  NRLKMETDEFYIKSQEEMCELFRDLPEALANTLKIAEKCNDFEIKFPGPIFPEYQVPSEF 296

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D        L    + GL+ R A             ++R  +EL+ I +M F  YFLIV 
Sbjct: 297  D---TLGQYLEYLTLEGLKFRYAS-------ITDSIKERAFYELSTIIKMGFEAYFLIVW 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++A  N IPVGPGRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 347  DFIKFAHDNGIPVGPGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERVSMPDFDID 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RDEVI+YV  KYG ++VAQIITFG+L+ KA  +DVGR L +P+++ + L KLIP+
Sbjct: 407  FCFEGRDEVIKYVTRKYGEDKVAQIITFGTLKPKAVFKDVGRVLDIPFAESNELTKLIPD 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   VSL+ + +D   +E        + L+E +  LEG+ RH STHAAGIVI   PL+ 
Sbjct: 467  GPK--VSLREVFEDGSLKEYLNKGAVYNELMEAALVLEGMNRHVSTHAAGIVIARTPLTD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
             VP+Y+D + D   TQ+ M  +E  GL+K DFLGLKTLTL++ + + +        ++ I
Sbjct: 525  YVPLYKDYKQDTVSTQYTMDLLEDCGLVKMDFLGLKTLTLIKNAENLIKITNPDFSIANI 584

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
               D +T+ +L+   +  +FQ ES GM+Q L   +PD IED+IAL +LYRPGP+  I  +
Sbjct: 585  SDSDAKTFKMLSEGRSASVFQFESEGMQQVLREAKPDSIEDLIALNALYRPGPMQFIPQF 644

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K G ++I   HP +  +L+ T GVI+YQEQVM++A++++G+SL +AD+LRRAMGKK 
Sbjct: 645  IAAKTGTKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIAGFSLGKADILRRAMGKKK 704

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            ++EM+K K  FI GA   G  +T+A +IFELL  FA YGFNKSHAAAY++I+YQTA++K 
Sbjct: 705  EDEMNKMKVDFIKGALSKGYDETLANDIFELLKPFAGYGFNKSHAAAYSLIAYQTAYLKA 764

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YP  F+AA++T E++N EK+  +  +A+   I ++ P +N    +F++  + I Y L  
Sbjct: 765  NYPENFMAANLTNEINNTEKLSYYIDEAKSMGIDVLKPDINQSFKEFRIVGHNISYGLNG 824

Query: 842  IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK +G      I+     +  + S EDF  RVD K +N++ LE+ + +G  D  G +R  
Sbjct: 825  IKNIGGLIVDLIIAERQENGEYKSFEDFIRRVDDKVINKKFLEAAIKSGLFDSLGQNRKT 884

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRV 958
            L ++LD +  +    + ++     ++F+    +    +  +   F   +     + E+ +
Sbjct: 885  LFENLDKLIAFVAKDKNDKKLGQNSLFSSLESQDVIVESFSYHVFEEYSYPELLKFEKDL 944

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGW 1017
            LGFY SGHPLD YK  L++       E +A  +   ++ A  + + +   T+K + R+ +
Sbjct: 945  LGFYVSGHPLDPYKSELKRFTNFNILEDLAVRKNTIVKFAGSLSTVKVIHTKKNNARMAF 1004

Query: 1018 VTFSEPAKEYEANFF 1032
                +     +   F
Sbjct: 1005 GVIEDFKGVIDIVVF 1019


>gi|188588146|ref|YP_001922465.1| DNA polymerase III DnaE [Clostridium botulinum E3 str. Alaska E43]
 gi|188498427|gb|ACD51563.1| DNA polymerase III subunit alpha [Clostridium botulinum E3 str.
            Alaska E43]
          Length = 1202

 Score = 1065 bits (2755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1081 (35%), Positives = 600/1081 (55%), Gaps = 66/1081 (6%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             K   FVHL +H+ YSLL+G+  +  I+ K       +IAITD   L+  ++F + A   
Sbjct: 14   NKEKDFVHLHLHTGYSLLDGSGKIKEIMAKTKELGMNSIAITDHGVLYGLVDFYKAAIEY 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PI+GC++ +  +    M  +      +   +VLLV    GY+ L+++VS   +    
Sbjct: 74   GIKPILGCEVYVAGKS---MKIKQPDKDNSTYHLVLLVKNEIGYRNLMKIVSTASIEG-F 129

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R+   +L +  ++G+I L+    G +       + + A++  L +K++F +  Y+ 
Sbjct: 130  YYKPRVDHEYL-KAHSDGIIALSACLGGEVQSHELKGNYEKAKETALLYKEIFKENFYLE 188

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H   ++ +   + ++L+    +PLVATN+  ++ ++ Y++HD+LM +     V   +
Sbjct: 189  IQNHGMDEQRKVNEENIKLSKELGIPLVATNDVHYIKKDGYKSHDILMCIQTGKTVDDVN 248

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R   D  YLK+  EM  +FS +PEALENTV+I+ +C++  + H   LP+F   E +  
Sbjct: 249  RRRYPSDQFYLKSPEEMWEMFSYIPEALENTVKISEQCNYEYKFHESKLPKFPLPEGE-- 306

Query: 304  QKEEENELRNKAVAGLEVRLAQ---------------GAIAKGYHAQDYRQRLDFELNVI 348
              E  N L+N    GL  R  +                  +K   A++   RL++EL +I
Sbjct: 307  --EPYNYLKNTCYMGLIERYEEFKEFRGKDLNYDKLDDLKSKNDSAKELIDRLEYELQII 364

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M +  YFLIV DFI++A  N IP GPGRGS AGS+ AY L IT IDP+++SL+FERFL
Sbjct: 365  KQMGYIDYFLIVWDFIKFANDNGIPTGPGRGSAAGSIIAYTLGITKIDPIKYSLIFERFL 424

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D DFC +RR EVI YV  KYG + V+QIITFG++ A+A +RDVGRA+   
Sbjct: 425  NPERVSMPDIDSDFCYERRQEVIDYVVEKYGEDNVSQIITFGTMAARACIRDVGRAMNYS 484

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            YS+VD++CK+IP      +  +A+  +   +E    D  V  L+++S+ LEGL RH+STH
Sbjct: 485  YSEVDKICKMIPTMLGITIE-KALDFNPELKEIYDKDERVKSLIDMSKDLEGLPRHSSTH 543

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+VI   PL Q VP+ +    ++ VTQF M  +E+ GL+K DFLGL+TLT++ ++L  
Sbjct: 544  AAGVVIASTPLVQYVPLQK--NDEMIVTQFGMTTLEELGLLKMDFLGLRTLTVMNEALKI 601

Query: 589  LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + + R + +DL  I FDD E Y ++    T G+FQLES GM   ++ ++PD +EDIIA +
Sbjct: 602  IKENRNIDIDLDKIDFDDKEVYKMIGEGKTAGVFQLESPGMVSFMKELKPDSLEDIIAGI 661

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            SLYRPGP+  I  Y   K   EK+    P ++ +L  T GV++YQEQVM+I + L+GYS+
Sbjct: 662  SLYRPGPMAEIPRYIECKRNPEKVKYEAPELEEILDVTYGVMVYQEQVMEIVRKLAGYSM 721

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFIS-----------GASKNGISKTIAVNIFELLAKF 756
              +D++RRAM KK  + M+++++ FI            G  +NGIS+  A  IF+ +  F
Sbjct: 722  GRSDMVRRAMSKKKHKVMEEERKNFIHGIIENDEVIVPGCIRNGISEEAANKIFDNMMDF 781

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A Y FNKSHAAAYAV+ YQTA++  +YPVE +AA +   M + EK+  +   A +  IQ+
Sbjct: 782  ASYAFNKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSFMGSSEKVVYYISKAEELGIQV 841

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK 875
            +PP +N     F V    I + LAAIK VG      +++   +   FDSL DF S++D  
Sbjct: 842  LPPDINESFAKFTVKGETIRFGLAAIKNVGMNLINSVVKTRENKGKFDSLFDFISKIDLS 901

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
             +N+R +ESL+ +G  D F   R +LL   + +        K   +   ++FA +   + 
Sbjct: 902  AINKRTIESLIKSGTFDSFKIYRSKLLAVYEKMVDSISNDRKRNIDGQISLFASD-DIYV 960

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR------------------- 976
             +I     +  +       E+ + G Y SGHPLD Y   L+                   
Sbjct: 961  PEIEYPNINEFDKRSLLTMEKEMTGLYISGHPLDDYAQSLKFQTSNEIGKIFSHHELLDD 1020

Query: 977  KMGIKGYEESVATIRG----NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + I+  ++ +    G    + + L  ++    +K TR  + + ++   +     E   F
Sbjct: 1021 NLEIQMLDDVINNESGINDNDRVILGGILTQVNKKVTRNNTIMAFLQLEDLTGTIEVIVF 1080

Query: 1033 P 1033
            P
Sbjct: 1081 P 1081


>gi|290968934|ref|ZP_06560469.1| DNA polymerase III, alpha subunit [Megasphaera genomosp. type_1 str.
            28L]
 gi|290780890|gb|EFD93483.1| DNA polymerase III, alpha subunit [Megasphaera genomosp. type_1 str.
            28L]
          Length = 1163

 Score = 1065 bits (2754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1035 (35%), Positives = 591/1035 (57%), Gaps = 30/1035 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YSL +G   +  ++    A   PAIA+TD  N++ A+   ++A A GI+P
Sbjct: 3    PFVHLHVHTQYSLFDGLCRIPEMVQMAKAMNMPAIAVTDHGNMYGAVHLYKEAKAQGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQS 128
            I+GC++ +      +   + +     +  ++LL    +GY  L+++VS+ Y+        
Sbjct: 63   ILGCEIYMTRGSRFEKKTRER-----LCHLILLAKNTQGYHNLVKIVSKGYVDGVNNYHK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
             R+    L++   EG+I L+    G I +    +    A K L     +F  D  Y+ +Q
Sbjct: 118  PRVDYELLEQYH-EGIIALSACIEGHIQQDILNHDEAAAIKTLQRLTGIFGKDDFYLEVQ 176

Query: 188  RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   +     +V  + +    + LVATN+  +L + D  A +V + ++  + ++  D  
Sbjct: 177  NHGIPEEKIVRRVFKEWSQQFGIRLVATNDYHYLKKNDAPAQEVKLCISTGSTLNNPDHF 236

Query: 247  RVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +   D  Y+K+  EM  +F D+PEAL  T+EIA +C+  L+     +P F     +    
Sbjct: 237  KFFNDSFYMKSYEEMAELFPDMPEALATTLEIAEKCNVELKFDERHVPSFPVPSGE---- 292

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             + + LR      L  +            +  R+R+D+EL++IA+M F  YFLIV D+++
Sbjct: 293  TDASYLRKLCEQSLPEKYPT-------VTETVRKRVDYELDIIAQMGFPSYFLIVWDYVK 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+ ++IPVGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R++MPD D+DFC +
Sbjct: 346  FARDHHIPVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVTMPDIDMDFCYE 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             R ++I YV  KYG + V+QIITFG+L AKA LRDVGR L++P S+V+R+ K++PN+   
Sbjct: 406  NRSKIIDYVTRKYGKDHVSQIITFGTLAAKAVLRDVGRVLEIPLSEVNRIVKMVPNELGM 465

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+      RE    DP + R + + + LEGL RHASTHAAGIVI   P+   +P+
Sbjct: 466  TLD-KALEQSRELRETVAKDPQIQRWMALGKALEGLVRHASTHAAGIVISAAPIDDYIPL 524

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                +     TQ++ + +E+ GL+K DFLGL+TLT++  ++  + +     +D   IP D
Sbjct: 525  QY-SKEGYLTTQYDKELVEELGLLKMDFLGLRTLTVIGDTIKLIKENHGTDIDPDHIPLD 583

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
            D  T  +LT   T G+FQ+ES G+   ++ + P   ED+I LV+LYRPGP+ + +V  + 
Sbjct: 584  DEATCRMLTMGDTAGVFQMESDGITALVKELAPKHFEDMIPLVALYRPGPLGSGMVEDFI 643

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R +G+  +  +HPL++P+L++T GVI+YQEQVMQIA  + G++L +AD+LRRAMGKK +
Sbjct: 644  KRSHGETAVTYLHPLLEPILRDTYGVILYQEQVMQIASSMGGFTLGQADLLRRAMGKKKE 703

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +  Q++ F++G   NGI   +A  +F+L+  FA YGFNKSH+AAYA +++QTA++K H
Sbjct: 704  SILKAQRDLFLAGTRANGIEDEVAHKVFDLMVYFAGYGFNKSHSAAYAYVAWQTAYLKAH 763

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            Y  E +AA+MT  +++V KI  +  + R+  I ++ P VNT    F V + RI + L+ +
Sbjct: 764  YRAELMAATMTSMINDVAKISYYISECRRHGIAVLSPDVNTSVSTFSVENGRIRFGLSGV 823

Query: 843  KGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K VG      I++   +  PF SL DFCSRV+   +NRRV+ESL+  GA+D FG  R QL
Sbjct: 824  KNVGENVIAVILQERQEGGPFTSLSDFCSRVNYHVVNRRVIESLIRCGAMDSFGKYRSQL 883

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLG 960
            +Q LD         +K+R      +F  +    +   ++  +    +   R   E+   G
Sbjct: 884  IQVLDRAMALGASKQKDRDTGQMGLFDEDDTEEALFDLSYPEIEEFSIEERLAMEKEYDG 943

Query: 961  FYFSGHPLDVYKPILRKMGIKG--YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            FYFSGHPL+ YK  +  +      Y E      G  I    ++ ++++  T++   +  +
Sbjct: 944  FYFSGHPLNKYKEQMAALTPLSALYGEHARQYDGKEIYCGGLISTQRRVTTKRKDLMAIL 1003

Query: 1019 TFSEPAKEYEANFFP 1033
            T  +  +   A  FP
Sbjct: 1004 TLEDYTQTVTAVVFP 1018


>gi|315111547|ref|YP_508882.2| DNA polymerase III subunit alpha [Jannaschia sp. CCS1]
          Length = 1177

 Score = 1065 bits (2754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 516/1069 (48%), Positives = 689/1069 (64%), Gaps = 59/1069 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+P FVHL++H+ YSLLEGA+ +  +   +A    PA+A+TDTNN+F ALEFS+ A  
Sbjct: 1    MTKAPKFVHLRLHTEYSLLEGAMKVKKMPGIVADAGMPAVAVTDTNNMFCALEFSEMAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+D++ +    +   G+ P      IVLL     GY+ L++L S +YL   
Sbjct: 61   AGVQPIIGCQIDLEYE----VIAPGEKPRAPAA-IVLLAQNRAGYENLMKLNSALYLRGD 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G  S  + LS L E   EGLI L+GG  GP+ R         AE  L T   ++ DRLYV
Sbjct: 116  GT-SPHVTLSELAE-HAEGLICLSGGPDGPVGRHLRAAQMPKAESLLKTLAAIYPDRLYV 173

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       ++  E   V+LAY   LPLVATN+  F   E YEAHD ++ VA   
Sbjct: 174  ELQRHPGEGGLPEAEKLTERGHVELAYALGLPLVATNDVYFPKSEIYEAHDAMLCVAQGA 233

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+TP HY K+  EM ++F+DLPEALENT+EIA+RC+F  ++H PILP+F +
Sbjct: 234  YVDQSEPRRRLTPQHYFKSADEMAALFADLPEALENTIEIAQRCAFRAEMHDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E          ELR  A  GL+ RL    I      +DY+ RLDFEL +I  M F GYF
Sbjct: 294  DEV--------AELRRMANEGLKERLR--VIPHAASVEDYQARLDFELEIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQW+K   IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIQWSKDQEIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERISMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ KYG +RV QIITFG+L +KAA+RDVGR LQMP+ QVDRL K
Sbjct: 404  FDIDFCMDRREEVIRYVQEKYGRDRVGQIITFGALLSKAAVRDVGRVLQMPFGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPS---------VDRLLEISQKLEGLYRHAST 527
            +IP +   PVS+ QAI D+ RF E                  RL++ ++K+EGL R+AST
Sbjct: 464  MIPVEGVKPVSIAQAIKDEPRFIEEMRESEQDKRDGRVNPTRRLMDYAEKIEGLLRNAST 523

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HAAG+VIGDRPL +LVP+YRD RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D
Sbjct: 524  HAAGVVIGDRPLDELVPLYRDPRSDMPATQFNMKWVEPAGLVKFDFLGLKTLTVVQNAID 583

Query: 588  FL----AQRGVKVD--------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             +     Q     D              ++LIP DD  +Y L  +  T+ +FQ+ESSGM 
Sbjct: 584  LIHTSGRQLHEGPDGTTLYEPPEGTENQINLIPLDDKASYDLYASAKTVAVFQVESSGMM 643

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             AL  M+PDCIEDIIALV+LYRPGP++NI  +   KNG  +   +HP +D +L ETQG+I
Sbjct: 644  DALRRMKPDCIEDIIALVALYRPGPMENIPKFCEVKNGLSERERLHPTVDHLLDETQGII 703

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+E MD ++ +F++GA +NG+ +  A+  
Sbjct: 704  VYQEQVMQIAQEMAGYSLGGADMLRRAMGKKIQEAMDAERPKFLAGAKENGVDEAKALET 763

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            + LL KFA+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M  ++   +K+  + Q+ 
Sbjct: 764  WALLDKFANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKQEV 823

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA----DKPFDSL 865
             +  I+ + P VN     F V D ++ Y+L A+K VG    + I+E        KP+ +L
Sbjct: 824  DRMGIETLAPCVNRSAATFTVEDGKVLYALGALKNVGVEAMKMIVEGRQTDQGVKPYATL 883

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             D   RVD K++ +R LE LV AGA D    +R  +L SLD +  Y+  V    ++   +
Sbjct: 884  FDLARRVDLKRVGKRSLEMLVRAGAFDELDRNRRHVLDSLDGLTAYSAAVHDQASSNQVS 943

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            +F  + G    +  L        + R   E + +GFYFSGHPLD Y+P L++ G+    E
Sbjct: 944  LFG-DAGDDLPEPRLSSAPDWLPNERLAAEHQAVGFYFSGHPLDDYQPALKRRGVMTLAE 1002

Query: 986  SVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              A ++      ++A  V  KQ++K+++G+R  +V+ S+P   YE   F
Sbjct: 1003 VEARVQQGPFVAKMAGAVSVKQERKSQRGNRFAFVSLSDPTGLYEITIF 1051


>gi|319956110|ref|YP_004167373.1| DNA polymerase iii, alpha subunit [Nitratifractor salsuginis DSM
            16511]
 gi|319418514|gb|ADV45624.1| DNA polymerase III, alpha subunit [Nitratifractor salsuginis DSM
            16511]
          Length = 1183

 Score = 1065 bits (2754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1060 (37%), Positives = 607/1060 (57%), Gaps = 43/1060 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F HL +H+ YSLL+GA  +  +  K+ A    ++A+TD  N+F  ++F      
Sbjct: 1    MSEHPRFTHLHLHTEYSLLDGANKIKALAKKVKALGMDSVAMTDHGNMFGTIDFYNTMRK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG +  +   D+L     G         + L      GY+ L+ L S+ YL   
Sbjct: 61   EGVKPIIGMEAYLHNSDDL-----GDKSTRQRYHLCLYAKNEIGYKNLMYLSSQAYLKG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA---------FFFNSSQVAEKRLLTFK 175
                 RI    L+E  +EGLI  +    G ++           F     + A+K  L +K
Sbjct: 115  FYYYPRINKKLLRE-HSEGLICSSACLQGEVNWHLNLSDRNKKFGAGGYEEAKKIALEYK 173

Query: 176  KLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            ++FGD  Y+ L RH   D+ R + Q+++L+    + ++ATN++ + + ED EAH+  M +
Sbjct: 174  EIFGDDFYLELMRHGIGDQQRIDEQIIRLSLETGIKIIATNDTHYTNPEDAEAHEAFMCI 233

Query: 235  AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            A +      +R R +  + Y+K+  EM  +F+D+PEALENT EIA +C+  +++  P  P
Sbjct: 234  AMNKQYDDPNRLRHSVHEFYVKSPEEMARLFADIPEALENTQEIAEKCNLEIKLGNPTPP 293

Query: 294  RF------IEKECDDIQKEEENE--------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
             F       +    ++ + EE            ++A  GLE RL      K     +YR+
Sbjct: 294  NFKFTRERAKLAGLELPEPEEEYSLANDIVLFEHEARKGLEKRLEHVPEEKHA---EYRE 350

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL+ E+ +I  MKF GY LIV DF++ AK+  IPVGPGRGS AGS+ AY+L+ITDIDP+ 
Sbjct: 351  RLETEIGIINSMKFPGYMLIVWDFVRAAKEMGIPVGPGRGSAAGSLVAYSLSITDIDPIP 410

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            + LLFERFLNP+R+SMPD D+DFCQ RR E+I YV  KYG   VAQIITFG L AK  +R
Sbjct: 411  YGLLFERFLNPERVSMPDIDMDFCQSRRQEIIDYVVEKYGRVNVAQIITFGKLLAKGVIR 470

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            DV R + +PY+Q D   KLIP++    +   A A + + +E    DP   ++   +  LE
Sbjct: 471  DVARVMGLPYAQADAFAKLIPDELGITLK-DAYAKEPKIKELIERDPKAAQVWRFALALE 529

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R+A THAAG+VI + PL +  P+++    +   TQ++ K++E   LIKFDFLGLKTL
Sbjct: 530  GLNRNAGTHAAGVVISNEPLWEKTPLFKPTGQETLATQYSGKYVEDVDLIKFDFLGLKTL 589

Query: 580  TLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T ++++L  + +R   ++D   +  +D + Y  + T  TLG+FQ+ES+GM+   + ++P 
Sbjct: 590  TTIEEALQLIEKRHGKRIDFKQVDINDPKVYDYIATGNTLGLFQIESAGMQDLAKKLKPS 649

Query: 639  CIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
              EDIIA+++LYRPGP+++ +   +  RK+G+ +I  + P ++P+LK T GVI+YQEQVM
Sbjct: 650  SFEDIIAMLALYRPGPMESGMLDDFVERKHGRAEITYMFPELEPILKPTYGVIVYQEQVM 709

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            QI Q + G+SL  AD++RRAMGKKIKEEMDK K +F  GA K G  +  A  +F+L+ KF
Sbjct: 710  QIVQTIGGFSLGGADLVRRAMGKKIKEEMDKLKGQFADGAEKKGFDRAKAEELFDLIVKF 769

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE DN  K+ ++    +   I +
Sbjct: 770  AGYGFNKSHSAAYAMVTFYTSYLKCYYPTEFMAAQLTLEKDNTTKVVRYVDAVKHMGIDL 829

Query: 817  MPPSVNTPCVDFKVGDNRIY----YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            +PP VN   + F   +        + L  +KG G    R I+E+  + PF  L DF SR+
Sbjct: 830  LPPDVNRSDLAFIADEIEGRPTILFGLGGVKGAGDVAIRSILESREEGPFRDLSDFISRI 889

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D+ K+N++V+E+ + AGALD  GY+R  +L  ++ I + A    + +     ++F   + 
Sbjct: 890  DTAKVNKKVIEAFIKAGALDGLGYTRKAMLTQIEAIMEAASKATQAKKMAENSLFGAGEE 949

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                ++ L+     +     E E+  LGFY SGHPLD Y+  L K+      E      G
Sbjct: 950  MTHVELELDPMEEFDPLQMLEFEKETLGFYVSGHPLDKYREELAKIDYTLSSEIDELADG 1009

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +       + S  +K ++KG++ G     +     E   F
Sbjct: 1010 SQALFIGKIESITEKISKKGNKFGIANVMDLHGNIELMLF 1049


>gi|197123916|ref|YP_002135867.1| DNA polymerase III subunit alpha [Anaeromyxobacter sp. K]
 gi|196173765|gb|ACG74738.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. K]
          Length = 1210

 Score = 1064 bits (2753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1083 (37%), Positives = 610/1083 (56%), Gaps = 70/1083 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL +H+ YSLL+GA+ + ++L  + A    ++A+TD  NLF A++F +KA  AG++
Sbjct: 2    PDFVHLHLHTLYSLLDGAIRIKDLLKTVKAKGMSSVAVTDHGNLFGAVDFYKKAKEAGVK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G +  +   D  +     +        ++LL   AEG+  L  L S+ +        
Sbjct: 62   PILGMEAYVA-GDKGRTDRSERIGR----HLILLAKNAEGWANLRYLSSKAFTEG-FYYD 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
             RI    L++  ++GL+ LT   +G + R         A +    ++ +F     ++ +Q
Sbjct: 116  PRIDKQLLRD-HSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLEVQ 174

Query: 188  RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   ++    +++ QL     +PLV T ++ ++S ++ +AH+VLM +A +       R 
Sbjct: 175  SNGMREQLDVNAKLAQLGRDEGIPLVGTADAHYVSRQEAKAHEVLMCIASNKTFQDPKRL 234

Query: 247  RVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R   D        EM +   D  EAL+NT+ IA  C+  L +    LP F   E      
Sbjct: 235  RHDTDGLFVAGPDEMAAALPDFREALDNTLRIAEMCNVELPLGKTFLPSFTLPEGM---- 290

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E++ +   A  GL+ R  +      +    YRQRL+ EL VI +M F GYFLIV DFI 
Sbjct: 291  SEDDYIDKLAREGLDRRFREIDGKYPHDRDVYRQRLEMELGVIKKMGFPGYFLIVQDFIN 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+++IPVGPGRGSGAGS+ A++L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DFCQ+
Sbjct: 351  WAKEHHIPVGPGRGSGAGSIVAWSLRITDLDPLRWHLLFERFLNPERVSMPDFDVDFCQN 410

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PA 484
            RRDEVI+YV+ KYG + V QIITFGSL+A++ +RDV R + +P+++ DR+ KL+P+    
Sbjct: 411  RRDEVIQYVRGKYGQDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDRIAKLVPDPVQG 470

Query: 485  HPVSLQAI-------ADDSRFREARLADPSV---------------DRLLEISQKLEGLY 522
                L+ +         + R +E       +                 LL+I+  LEGL 
Sbjct: 471  KTPPLKELVFGSDKMPAEPRLKELHDKPAVISQWVDDKGVQNKVTTKDLLDIAMSLEGLN 530

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R A  HAAG+VI D+PL + VP Y+D +S++ V+QF  + +E AGL+KFDFLGLKTLT++
Sbjct: 531  RQAGLHAAGVVIADKPLWEYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKTLTVI 590

Query: 583  QKSLDFLAQRGVKVDL---SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
              +L  + +   ++     S IP DD   Y L++   T G+FQ+ESSG  + +  M+P  
Sbjct: 591  DDALRMVKRNHPEMKDFAASDIPIDDPAVYELISRGDTGGVFQMESSGFTEMVVKMKPSR 650

Query: 640  IEDIIALVSLYRPGPID--------NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
             ED+IA  +LYRPGP+D         + VY +RK+G+EK+   H  ++ +L+ T GVI+Y
Sbjct: 651  FEDVIAAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVQYPHQSLEKVLEPTYGVIVY 710

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQI+Q+L+GYSL +AD+LRRAMGKK  E M K++  F++GA  NG+ + +A  IF+
Sbjct: 711  QEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVANGVDEKVAGGIFD 770

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            L+ KFA YGFNKSH+AAY +++ QTAW+K HYPVEF+AA ++ E  N +K+     +AR 
Sbjct: 771  LMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHISEARA 830

Query: 812  FNIQIMPPSVNTPCVDFKV----------GDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
              ++++PP VN     F               RI + L A++GVG +  + I+EA A  P
Sbjct: 831  SQLEVLPPDVNESDAAFGAFPPGPESPKGSRGRIRFGLGAVRGVGESAVQAIVEARASGP 890

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F SL D   RVDSKK+N++VLE+LV +GALD  G  R QL   +D         + +R +
Sbjct: 891  FKSLFDLAGRVDSKKINKKVLEALVKSGALDFEGVPRWQLYFGIDAAISAGASAQADRAS 950

Query: 922  KHENIFAHEK-----------GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
               ++F                   D +           VR   E+  LGFY +GHPL  
Sbjct: 951  GQASLFGALAASAATEAKPRYPRPGDAVGEVTVEEWPERVRLAFEKEALGFYLTGHPLMG 1010

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEA 1029
            Y+  +R+              G+ + +  +V S +++  + KG+R G++T  +     E 
Sbjct: 1011 YEREVRRYASSTCAAVAQKRHGDKVTVVGVVASLRERMNKEKGTRFGFLTLEDLTGTTEV 1070

Query: 1030 NFF 1032
              +
Sbjct: 1071 ICW 1073


>gi|52841197|ref|YP_094996.1| DNA polymerase III, alpha subunit [Legionella pneumophila subsp.
            pneumophila str. Philadelphia 1]
 gi|52628308|gb|AAU27049.1| DNA polymerase III, alpha subunit [Legionella pneumophila subsp.
            pneumophila str. Philadelphia 1]
          Length = 1148

 Score = 1064 bits (2753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1039 (41%), Positives = 626/1039 (60%), Gaps = 35/1039 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VH+ +SL++G + +  ++  + A    A+A+TD  NLF+A++  + A  AGI+P
Sbjct: 4    RFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSAVAVTDFCNLFAAVKVFKSATEAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L                    + S+VLL     GY+ L  LVS+ Y   Q     
Sbjct: 64   IIGSDLPCH----------DLETPDNIFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHGQP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+ L W+QE  ++GLI L+GG  G I +A   N   +A KR L +  LF +R Y+ +QR 
Sbjct: 114  RVQLQWIQEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRT 172

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
               D      +++ LA   +LPLVATN+  F+ E+D++AH+  + +     ++   R  +
Sbjct: 173  GRADELHYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRVQQ 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YL++  EM  +FSDLP AL+NTVEI++RC+  L++    LP F   +   +    
Sbjct: 233  YSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDGTTV---- 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYH-----AQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            E  L + +  GLE RL Q    K          +Y +RL  EL+VI  M F+GYFLIVAD
Sbjct: 289  EAYLSHLSEIGLEERLKQLFRDKSEGELLAARGEYDKRLKIELDVINNMGFAGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI YV  KYG + V+QIITFG++ AKA +RDVGR L  PY  VD+L KLIP +
Sbjct: 409  CMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +S +A+  +   R     +  V  L +++ KLEG+ R+A  HA G+VI    L+  
Sbjct: 469  LGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAPSQLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
              +Y +  S   V+QF+   +E  GL+KFDFLGL+TLT++  +L  + ++        +D
Sbjct: 528  TAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPID 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +S IP  D  T+ LL    T  +FQLES GM++ +  +QPDC EDIIALV+L+RPGP+ +
Sbjct: 588  ISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  + +RK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L  AD+LRR
Sbjct: 648  GMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRR 707

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ+E F  GA   G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++YQ
Sbjct: 708  AMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQ 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TAW+K HYP  F+AA M+ +MDN +K+  F  +     +Q++PPS+N     F V D + 
Sbjct: 768  TAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFTVSDEKT 827

Query: 836  -YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
              Y L AIKGVG +    I++    + PF  L  FC R+D +K+NRRV+E+L+ +GA D 
Sbjct: 828  IIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDI 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            +   R  L  SL+   K A+   +N+++   ++F+  +   +D+    +    + + R E
Sbjct: 888  WKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDK-ADEQNYVESKSWSEAQRLE 946

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ VLGFY +GHP D Y+  L    I    +   ++    I + A VV+ ++  T++G 
Sbjct: 947  GEREVLGFYLTGHPADQYRRELGDF-IVPVSQLNPSLHKKAI-ICAQVVAIRKIITKRGK 1004

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            ++  +   +     +A  F
Sbjct: 1005 KLVIIGMDDATARIDAVVF 1023


>gi|163857430|ref|YP_001631728.1| DNA polymerase III subunit alpha [Bordetella petrii DSM 12804]
 gi|163261158|emb|CAP43460.1| DNA polymerase III, alpha subunit [Bordetella petrii]
          Length = 1163

 Score = 1064 bits (2753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1055 (38%), Positives = 613/1055 (58%), Gaps = 45/1055 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +++ +  +P+FVHL+VHS +S+++G + + +++ ++A   QPA+A+TD +N+F  ++F +
Sbjct: 1    MSEAVNPTPAFVHLRVHSEFSVVDGIVRIPDLIKRVAQLGQPAVALTDLSNIFGLIKFYK 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AG++PI GC + +   D+ +              ++LLV   +GY  L EL++R +
Sbjct: 61   GARGAGVKPIAGCDVWLTNDDDPEK----------PFRLLLLVRNHQGYLNLCELLTRSF 110

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L +QG+    I   WLQ  G +GLI+L+GG +G I  A    ++  A      +  LF  
Sbjct: 111  LENQGRGRAEIRREWLQ--GRQGLIVLSGGRAGDIGHALDAGNAVTALALARQWGALFPG 168

Query: 181  RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR     D       ++LA    LP+VAT+   FL   +Y+AH+  + +A   +
Sbjct: 169  AFYIELQRAGADGDEAYTQAAMRLAAEAGLPVVATHPVQFLDASEYQAHEARVCIAQGEI 228

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R T D YL +  EM   F+D+P AL NTVEIA+RC+  L +  P LP F   
Sbjct: 229  LADPRRVRRFTKDQYLLSTEEMARRFADVPSALANTVEIAKRCNLTLVLGKPRLPNFPTP 288

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L   +  GLE RL         +      Y +RL +E   I +M F G
Sbjct: 289  DGISL----DDYLVQLSEEGLEKRLEFLFPDPAERDAKRAQYYERLRWECKTIIQMGFPG 344

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SM
Sbjct: 345  YFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSM 404

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQD R+ VI YV+ KYG E V+QI TFG+L AKA +RD GR L MPY   D L
Sbjct: 405  PDFDIDFCQDNRERVIDYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMPYLFCDGL 464

Query: 476  CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP +PA P SL   + D+  F+E    +  V  L+++++ LEGL R+   HA G++I
Sbjct: 465  SKLIPFNPADPWSLDRTLKDEPAFKERYEQEEEVRALVDLARPLEGLTRNIGMHAGGVLI 524

Query: 535  GDRPLSQLVPMYRDVR-SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--- 590
                L+   P+Y      +  V+QF+   +E AGL+KFDFLGL+ LT+L  ++ ++    
Sbjct: 525  APGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRRFN 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            +     D+  +P DD   Y +L    T  +FQLES GM++ L+ ++P+  EDIIA+++LY
Sbjct: 585  ESKRDFDIMALPLDDPAAYKVLCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALY 644

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+++ +V  + NRK+G+  +   HP ++  LK T GVI+YQEQVM I+Q++ GYSL 
Sbjct: 645  RPGPLESGMVDDFVNRKHGRATVDYFHPDLEATLKSTYGVIVYQEQVMLISQIIGGYSLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM K +E F  GA + G    +AV +F+L+ KFA YGFNKSH+AA
Sbjct: 705  GADLLRRAMGKKKPEEMAKHRELFEKGAKEKGHDPNLAVKLFDLMEKFAGYGFNKSHSAA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+I+YQTAW+K ++P EFLAA+++ +MD+ +K++ FC+DA+   + ++PP VN     F
Sbjct: 765  YALIAYQTAWLKAYHPTEFLAATISSDMDDTDKVQVFCRDAQDNGVLVLPPDVNASGYRF 824

Query: 829  KVGDNR----------IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKL 877
            +   +           + Y L A+KG G      I+ A  AD PF +L DFC RV+   +
Sbjct: 825  EPVADEHTREGRPPRTMRYGLGAVKGTGQGAVEEILRAREADGPFANLFDFCRRVNKHAV 884

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR +E+L+ AGA D    +R  +L S+    + A+     R+    ++F  + G     
Sbjct: 885  NRRTIEALIKAGAFDTIEPNRAAMLASVGTAMEAAEQA--ARSANQVSLFGDDSGDVVAG 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
              L K +  N   +   E+  LGFYFSGH  D ++  +R++                  +
Sbjct: 943  -ELSKVAPWNLHTKLTEEKSALGFYFSGHLFDHWRDEVRRIVPMPLARVEPQRDLQW--M 999

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++   +   TR+G  + +    +   + E + F
Sbjct: 1000 CGVLAGVRTMMTRRGK-MVFAVLDDGTAQVEISVF 1033


>gi|220918685|ref|YP_002493989.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-1]
 gi|219956539|gb|ACL66923.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-1]
          Length = 1210

 Score = 1064 bits (2752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/1083 (37%), Positives = 611/1083 (56%), Gaps = 70/1083 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL +H+ YSLL+GA+ + ++L  + A    ++A+TD  NLF A++F +KA  AG++
Sbjct: 2    PDFVHLHLHTLYSLLDGAIRIKDLLKTVKAKGMSSVAVTDHGNLFGAVDFYKKAKEAGVK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G +  +   D  +     +        ++LL   AEG+  L  L S+ +        
Sbjct: 62   PILGMEAYVA-GDKGRTDRSERIGR----HLILLAKNAEGWANLRYLSSKAFTEG-FYYD 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
             RI    L++  ++GL+ LT   +G + R         A +    ++ +F     ++ +Q
Sbjct: 116  PRIDKQLLRD-HSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLEVQ 174

Query: 188  RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   ++    +++ QL     +PLV T ++ ++S ++ +AH+VLM +A +       R 
Sbjct: 175  SNGMREQLDVNAKLAQLGRDEGIPLVGTADAHYVSRQEAKAHEVLMCIASNKTFQDPKRL 234

Query: 247  RVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R   D        EM +   D  EAL+NT+ IA  C+  L +    LP F   E      
Sbjct: 235  RHDTDGLFVAGPDEMAAALPDFREALDNTLRIAEMCNVELPLGKTFLPSFTLPEGM---- 290

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E++ +   A  GL+ R  +      +    YRQRL+ EL VI +M F GYFLIV DFI 
Sbjct: 291  SEDDYIDKLAREGLDRRFREIDGKYPHDRDVYRQRLEMELGVIKKMGFPGYFLIVQDFIN 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+++IPVGPGRGSGAGS+ A++L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DFCQ+
Sbjct: 351  WAKEHHIPVGPGRGSGAGSIVAWSLRITDLDPLRWHLLFERFLNPERVSMPDFDVDFCQN 410

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PA 484
            RRDEVI+YV+ KYG + V QIITFGSL+A++ +RDV R + +P+++ DR+ KL+P+    
Sbjct: 411  RRDEVIQYVRGKYGQDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDRIAKLVPDPVQG 470

Query: 485  HPVSLQAI-------ADDSRFREARLADPSV---------------DRLLEISQKLEGLY 522
                L+ +         + R +E       +                 LL+I+  LEGL 
Sbjct: 471  KTPPLKELVFGSDKMPAEPRLKELHDKPAVISQWVDDKGVQNKVTTKDLLDIAMSLEGLN 530

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R A  HAAG+VI D+PL + VP Y+D +S++ V+QF  + +E AGL+KFDFLGLKTLT++
Sbjct: 531  RQAGLHAAGVVIADKPLWEYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKTLTVI 590

Query: 583  QKSLDFLAQRGVKVDL---SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
              +L  + +   ++     S IP DD   Y L++   T G+FQ+ESSG  + +  M+P  
Sbjct: 591  DDALRMVKRNHPEMKDFAASDIPIDDPAVYELISRGDTGGVFQMESSGFTEMVVKMKPSR 650

Query: 640  IEDIIALVSLYRPGPID--------NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
             ED+IA  +LYRPGP+D         + VY +RK+G+EK+   HP ++ +L+ T GVI+Y
Sbjct: 651  FEDVIAAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVQYPHPSLEKVLEPTYGVIVY 710

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQI+Q+L+GYSL +AD+LRRAMGKK  E M K++  F++GA  NG+ + +A  IF+
Sbjct: 711  QEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVANGVDEKVAGGIFD 770

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            L+ KFA YGFNKSH+AAY +++ QTAW+K HYPVEF+AA ++ E  N +K+     +AR 
Sbjct: 771  LMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHISEARA 830

Query: 812  FNIQIMPPSVNTPCVDFKV----------GDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
              ++++PP VN     F               RI + L A++GVG +  + I+EA A  P
Sbjct: 831  SQLEVLPPDVNESDAAFGAFPPGPESPKGSRGRIRFGLGAVRGVGESAVQAIVEARASGP 890

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F SL D   RVDSKK+N++VLE+LV +GALD  G  R QL   +D         + +R +
Sbjct: 891  FKSLFDLAGRVDSKKINKKVLEALVKSGALDFEGVPRWQLYFGIDAAISAGASAQADRAS 950

Query: 922  KHENIFAHEK-----------GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
               ++F                   D +           VR   E+  LGFY +GHPL  
Sbjct: 951  GQASLFGALAASAATEAKPRYPRPGDAVGEVTVEEWPERVRLAFEKEALGFYLTGHPLMG 1010

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEA 1029
            Y+  +R+              G+ + +  +V S +++  + KG+R G++T  +     E 
Sbjct: 1011 YEREVRRYASSTCAAVAQKRHGDKVTVVGVVASLRERMNKEKGTRFGFLTLEDLTGTTEV 1070

Query: 1030 NFF 1032
              +
Sbjct: 1071 ICW 1073


>gi|91775600|ref|YP_545356.1| DNA polymerase III, alpha subunit [Methylobacillus flagellatus KT]
 gi|91709587|gb|ABE49515.1| DNA polymerase III, alpha subunit [Methylobacillus flagellatus KT]
          Length = 1149

 Score = 1064 bits (2751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1039 (40%), Positives = 620/1039 (59%), Gaps = 35/1039 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K PSF+HL+ HS YS+++G + + + + +  ADQ PA+A+TD +NLF A++F + A  
Sbjct: 1    MSK-PSFIHLRCHSEYSVVDGTVRIGDYVKQAVADQMPALALTDLSNLFGAIKFYKAARG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++P+IG  + ++ +                  ++LL  +  GY RL EL+SR +L +Q
Sbjct: 60   KGVKPLIGADIWLENESK----------RDQPYRLLLLCHSHVGYLRLCELLSRAFLHNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I   WL+E GTEGLI+L+G  +G I +A    +   A+     +  LF  R Y+
Sbjct: 110  YRGRAEIKREWLREGGTEGLILLSGAMAGDIGQALLQGNFSQAQTLAGEWAALFPQRFYI 169

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR          +  + LA   ELP+VAT+   F++ +D++AH+  + +A   V++  
Sbjct: 170  ELQRAGHPQQEAYIASALALASELELPVVATHPVQFMAPDDFKAHEARVCIAEGYVLADN 229

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  TP+ Y K++++M  +F+D+PEAL N+VEIA+RC+  L +    LP+F     + 
Sbjct: 230  RRPKLFTPEQYFKSQAQMAELFADIPEALANSVEIAKRCNLTLTLGKNYLPQFPTPNGES 289

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +    +  L  +A AGLE RL         +     +Y  RL FE N+I +M F GYFLI
Sbjct: 290  L----DEYLVAQAKAGLEERLKVLFPDEGQREAKRPEYEARLQFETNIIIQMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DP+R++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPMRYALLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ+ RD VI YV+ KYG + V+QI TFG++ AKA +RDVGR L +P++ VD + KLI
Sbjct: 406  IDFCQEGRDRVIDYVKRKYGLDAVSQIATFGTMAAKAVIRDVGRVLDLPFTFVDSVAKLI 465

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            PN+    +S +A+  + + +E R  +  V  LLE++ +LEGL R+   HA G++I    +
Sbjct: 466  PNELGISLS-EALEKEPQLKERREQEEEVAELLELALRLEGLTRNIGMHAGGVLISPGKI 524

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            S   P+Y     +  V+Q++   +E  GL+KFDFLGL+TLT+L  +L+    +  +    
Sbjct: 525  SDFSPVYCQASGESVVSQYDKDDVEAVGLVKFDFLGLRTLTILAMALESANLQRAEHGLE 584

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D   +P DD  +Y LL    T  +FQLES GM+  L+  +PD  EDIIALV+LYRPGP
Sbjct: 585  PLDFETLPIDDKASYQLLKAANTTAVFQLESRGMKDMLKQAKPDVFEDIIALVALYRPGP 644

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RK+G +++   HP  +P+LKET G+++YQEQVMQIAQ+++GYSL  AD+LR
Sbjct: 645  MDLIPDFCRRKHGLQRVEYPHPATEPILKETYGIMVYQEQVMQIAQVVAGYSLGGADLLR 704

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ+  FI GA KNG S+  A  +F+L+ KFA YGFNKSHAAAYA+++Y
Sbjct: 705  RAMGKKKPEEMAKQRSIFIEGAVKNGTSEKQAGELFDLMEKFASYGFNKSHAAAYALVAY 764

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDN 833
            QTA++K HYP  FLAA+M+ +M+N + I  F  D     ++++PP +N     FK +   
Sbjct: 765  QTAYLKAHYPAAFLAATMSADMNNTDNIHLFYDDCIFNGLEVLPPDINASEYRFKPINAK 824

Query: 834  RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +I Y L AIKG G      I+ A  +  PF  L DFCSR+D +K+NRRV+ESL+ AGA D
Sbjct: 825  QILYGLGAIKGTGWAAIELILAARQEGGPFKDLFDFCSRLDLRKVNRRVIESLIRAGAFD 884

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                +R  LL  +      A+       +  +++F       S    L +        R 
Sbjct: 885  KLEPNRAALLAGVSLAISAAEQS--GAASGQDSLFGSV--IDSAVHVLPETPPWTEKQRL 940

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LGFYFSGHP   Y+  +             +       LA +V+  + + T +G
Sbjct: 941  QEEKAALGFYFSGHPYADYQKEVATFVRSNLANLKPS--DQPQLLAGVVMGVRIRMTGRG 998

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
              +  VT  + A   +   
Sbjct: 999  K-MAIVTLDDMAGRVDIVV 1016


>gi|89894058|ref|YP_517545.1| hypothetical protein DSY1312 [Desulfitobacterium hafniense Y51]
 gi|89333506|dbj|BAE83101.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1190

 Score = 1063 bits (2750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1040 (37%), Positives = 595/1040 (57%), Gaps = 36/1040 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YSLL+GA  +  ++ K      P++AITD   ++  ++F +    AGI+P
Sbjct: 2    GFVHLHVHTEYSLLDGAARIEKLVKKAVELGMPSVAITDHGVMYGIIDFYKACKKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +      + T +          +VLL    EGY+ LI+LVS  ++        
Sbjct: 62   IIGCEVYVAPH---RRTEKVPGRDDNNRHLVLLAENEEGYKNLIKLVSMAHIEG-FYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L++  + GLI L+   +G +      N  + A +  L ++++F     ++ +Q 
Sbjct: 118  RVDKDILRK-HSRGLIALSACLAGEVSEYLLNNQLETAVESALEYEEIFGKGNFFLEVQD 176

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ R  + + ++     +P+VATN+  ++++ED    DVL+ +     ++   R  
Sbjct: 177  HGLEEQQRVNTGMFEVQRRTGIPMVATNDVHYVNKEDAFIQDVLICIQTGKNLTDASRMS 236

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + + +  K+ +EM  +F + PE LENT  IA RC    +     LP F   E       
Sbjct: 237  FSSEEFFLKSEAEMNLLFGEHPEILENTARIAERCQVDFKFGDNYLPVFEVPEG----YT 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  LR K      +              + ++RLD+EL VIA+  FSGYFLIVADF Q+
Sbjct: 293  LDTYLRKKCYEAFPLFYPN-------QRTEEKERLDYELGVIAQTGFSGYFLIVADFCQY 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++N I VGPGRGS A S+ AY + IT ++P++  LLFERFLNP+R+SMPD DIDF  D 
Sbjct: 346  ARQNGIAVGPGRGSAAASMVAYLMGITTVEPMQHDLLFERFLNPERISMPDIDIDFDPDG 405

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+ VI YV  KYG ++V QIITFG++ AKAA+RDVGR L +P ++VD++ K IP+D    
Sbjct: 406  RERVINYVMEKYGADKVCQIITFGTMGAKAAIRDVGRVLGIPLARVDKVAKAIPSDLGMT 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+A      +    D  + +L EI++ LEG+ RHASTHAAG+VI    L   +P+ 
Sbjct: 466  LE-KALAVSPDLVKLLEEDGEIKKLYEIARSLEGMPRHASTHAAGVVIAKDALDTYIPLQ 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
            R       +TQF MK +E+ GL+K DFLGL+ LT++Q++L  +   RG  +DL  +P DD
Sbjct: 525  RTSDGGFTMTQFPMKTVEEVGLLKMDFLGLRNLTIIQETLKQIEGNRGEVLDLQSLPLDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T+ +L+   + G+FQLES GMR  L+ ++P C EDIIA+V+L+RPGP++ I  +  RK
Sbjct: 585  KATFDMLSLGNSTGVFQLESGGMRNVLKELKPSCFEDIIAVVALFRPGPMEQIPEFIRRK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G   +  +HPL++P+L+ T GVI+YQEQVMQIA+ L+GYSL  AD+LRRAMGKK KE M
Sbjct: 645  HGGN-VSYLHPLLEPILRSTYGVIVYQEQVMQIARDLAGYSLGRADLLRRAMGKKKKEIM 703

Query: 726  DKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            +++++ FI             GA K G+++  A  IF+L+AKFA+YGFNK HA AYAVIS
Sbjct: 704  EEERQSFIYGLQSPSGEEIIPGALKLGLTEKEAAEIFDLMAKFAEYGFNKGHATAYAVIS 763

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K +YP+EF AA ++  M + +K+  +  +ARQ  I+I+PP V    V F +   
Sbjct: 764  YQTAYLKANYPLEFNAALISTVMSSADKVSFYIHEARQSGIEILPPDVQYSQVGFSIEGR 823

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I + L AI+ VG      I+EA  +  F+SL DFC RVD+K LN+RVLESL+ AGA   
Sbjct: 824  GIRFGLGAIRNVGVNVVEKIIEARQEGLFESLYDFCIRVDAKVLNKRVLESLLKAGAFSL 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R Q L +LD+I + AQ  ++++ +   ++F        + I L      +      
Sbjct: 884  LCK-RAQGLLALDSILEVAQQRQRDKESGQISLF-DFGDNLDEGIELPDVEEYSPRELLT 941

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  LG Y SGHPL+   P L+    +     +       + L  +V   +   T++G 
Sbjct: 942  MEKEYLGLYLSGHPLESVLPKLKNAVSEDILTCLEGDEEKKVILGGIVTGYRTTVTKRGE 1001

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             +      +     +   FP
Sbjct: 1002 MMASFVLEDLTGTIDVLVFP 1021


>gi|71279814|ref|YP_268312.1| DNA polymerase III subunit alpha [Colwellia psychrerythraea 34H]
 gi|71145554|gb|AAZ26027.1| DNA polymerase III, alpha subunit [Colwellia psychrerythraea 34H]
          Length = 1186

 Score = 1063 bits (2750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1059 (39%), Positives = 607/1059 (57%), Gaps = 50/1059 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
             P F+HL+VHS YS+ +G   +  I+ K      PA+A+TD  NL   +++   A  AGI
Sbjct: 17   PPKFIHLRVHSDYSMCDGLKKVKPIVAKAVELNMPALALTDQTNLCGLVKYYHAAHGAGI 76

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC   +          +       +  IV+L +   GY+ + EL+S+ Y+    + 
Sbjct: 77   KPIIGCDFWV----------KSDELEDELSRIVVLTTNNVGYKNITELISKAYMRGHIQN 126

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I  SWL E   EGLI+L+GG  G I +A    ++++ ++ +  +++ F    ++ L 
Sbjct: 127  KAVIDKSWLVEY-KEGLILLSGGREGDIGKALLKGNTELVDEMVSFYQQHFDRCYFLELV 185

Query: 188  RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R    D      + V+LA    LP+VATN  +FLS  D++AH++ +A+     +  K RP
Sbjct: 186  RTGRNDEENYIHLAVELAEKENLPVVATNEVMFLSPNDFDAHEIRVAIHDGFTLDDKRRP 245

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R + + YL++  EM  +FSD+PEAL N+VEIA+RC+  + +   +LP F  +       
Sbjct: 246  KRYSSEQYLRSEEEMCELFSDIPEALANSVEIAKRCNVTVTLGEYVLPDFPTE-----GL 300

Query: 306  EEENELRNKAVAGLEVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            E  +     +  GLE RL Q     A       + Y +RL  EL V+  M F GYFLIV 
Sbjct: 301  EINDFFIKVSEKGLEKRLDQLFDRQADDFAEIRKPYDERLAIELEVVNNMGFPGYFLIVM 360

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID
Sbjct: 361  EFIQWSKDNNIPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDID 420

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 421  FCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 480

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   +  +A  ++ +  E    D  V  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 481  TPGMTL-AKAFEEEPKLPEVYAQDSDVKDLIDMCRILEGTTRNAGKHAGGVVISPTTITD 539

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-----LAQRGVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT+LQ +++      +      +
Sbjct: 540  FAPLYCDDEGKNPVTQFDKNDVEDAGLVKFDFLGLRTLTILQWAIEMADAKLIKAGKEPI 599

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ I  +D  ++ LL    T  +FQLESSGM+  ++ ++PDC EDIIALV+L+RPGP+ 
Sbjct: 600  DITKIDLEDKASFKLLLASKTTAVFQLESSGMKSLIDKLKPDCFEDIIALVALFRPGPLQ 659

Query: 657  NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +   +  RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL  
Sbjct: 660  SGMVDNFIERKHGREEVSYPDATWQHEDLQPVLEPTYGIILYQEQVMQIAQVLAGYSLGG 719

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 720  ADMLRRAMGKKKPEEMAKQRAGFEQGAKDRGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 779

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT WMKTH+P  F+AA M+ +MDN EKI     +     I ++PP VN     F 
Sbjct: 780  ALVSYQTLWMKTHFPAPFMAAVMSADMDNTEKIVTLVDECGNMEIDLLPPDVNAGQYKFT 839

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  DN+I Y + A+KGVG      I+ A   D PF  L DFC+R+D KK N+RVLE L+ 
Sbjct: 840  VNSDNQIVYGIGAVKGVGEGPIEAIISARQSDGPFTDLFDFCARLDLKKTNKRVLEKLIK 899

Query: 888  AGALDCFGY------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            +GA+D  G             +R  L ++L    K A+   K  +    ++F       +
Sbjct: 900  SGAMDSLGPKYVQGKAKEQGANRAALFETLPEAIKAAEQHAKAESLGQNDLFGLINDEQT 959

Query: 936  D-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
            D + T ++          + E+  LG Y +GHP++ Y   ++K           T R   
Sbjct: 960  DSRQTFKEVRAWPEEKWLDGEKETLGLYLTGHPINRYLSEIKKYSSSRLVVMQPTGRDRQ 1019

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 +V+  +    ++G R   VT  + +   +   FP
Sbjct: 1020 AVAVGLVIGVRVLVNKRGRRWALVTLDDKSARMDIRLFP 1058


>gi|326201799|ref|ZP_08191670.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
            2782]
 gi|325988399|gb|EGD49224.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
            2782]
          Length = 1158

 Score = 1063 bits (2750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1056 (35%), Positives = 589/1056 (55%), Gaps = 50/1056 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL VH+ YSLL+GA  + +++ ++      +IAITD   ++  ++F ++A   GI+P
Sbjct: 3    NFVHLHVHTEYSLLDGANRIKDLIQRVKELGMDSIAITDHGVMYGVVDFYKEAVKNGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++    ++   M ++          +VLL     GY+ L+++VS  +         
Sbjct: 63   ILGCEVYTAKRN---MKDKQPGIDSNYGHLVLLAKNQIGYKNLMKIVSLGFTEG-YYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L++  +EG+I L+   SG I  A   N  + A +      ++F     Y+ LQ 
Sbjct: 119  RVDYETLEKY-SEGIIALSACLSGDIPSAILNNDYERAVELSNNLNRIFGQGNFYLELQH 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++     Q+++L+    +PLVATN++ +L++E+ ++H++L+ +     ++  +R R
Sbjct: 178  NGISEQNLVNQQLIKLSGELGIPLVATNDAHYLTKENAKSHEILLCIQTGKTINDDNRMR 237

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  Y+K+  EM   F ++ +ALENTV+IA  C+  L+     LP F  +E       
Sbjct: 238  FNTDEVYVKSPEEMYDNFKNVKQALENTVKIAEMCNVELEFGKLHLPSFEVEEG----YT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR +   GL+ R           +++   RL++EL+VI++M +  YFLIV DFI++
Sbjct: 294  PYEYLREQCYKGLKSRYGDNC------SEEIIHRLEYELSVISQMGYVDYFLIVWDFIKY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I VGPGRGS AGS+ +YAL IT IDPL+++LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 348  AREQGIMVGPGRGSAAGSIVSYALGITSIDPLKYNLLFERFLNPERISMPDIDIDFCYER 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV+QIITFG++ A+A +RDVGRAL + Y  VD + K+IP      
Sbjct: 408  RQEVIDYVIRKYGKDRVSQIITFGTMAARAVIRDVGRALDISYGDVDAIAKMIPFQIGMN 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   ++    D     L++ ++ LEGL RHASTHAAG+VI   P+ + VP+ 
Sbjct: 468  ID-KALEMNQELKKRYETDEETQVLIDTARTLEGLPRHASTHAAGVVISKEPIVEYVPLQ 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
              +  +   TQ     +E+ GL+K DFLGL+TLT+++ ++D   Q  G K+D+  I FDD
Sbjct: 527  --LNDNSVTTQVTAVPLEELGLLKMDFLGLRTLTVIRDAVDLAEQVHGKKIDIQQIDFDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             + Y ++    T G+FQLES+GM Q ++ +QP+ +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 585  KDVYKMIGDGRTAGVFQLESAGMTQFMKDLQPNSLEDIIAGISLYRPGPMDQIPRYIRNK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  + I   HP+++ +L  T G ++YQEQVMQI + L GYSL  +D++RRAM KK    M
Sbjct: 645  NNPKLIKYHHPMLESILDVTYGCMVYQEQVMQIVRELGGYSLGRSDLVRRAMSKKKISVM 704

Query: 726  DKQKERFISGA------------SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            +++++ F+ G               NG+ +  A  IF+ +  FA Y FNKSHAAAYAV++
Sbjct: 705  EQERKNFVYGITDEEGNEVVKGAVNNGVDEITANKIFDEMMDFASYAFNKSHAAAYAVVA 764

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTAW+K +YPVEF+AAS+   + + +K+ ++  + +  NIQ++PP +N   V F V + 
Sbjct: 765  YQTAWLKHYYPVEFMAASINSFLGSSDKVSQYVNECKSLNIQVLPPDINESNVKFTVVNK 824

Query: 834  RIYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + LAAIK VG    +  I E   +  F S  DFC R++ + +N+R +ESL+ +GA D
Sbjct: 825  NIRFGLAAIKNVGENAIKSVIAERQQNGEFSSFLDFCQRIEGRDINKRCVESLIKSGAFD 884

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSSVR 951
                 R +L+   + +        K   +   +IF          +          ++  
Sbjct: 885  SLKVFRSKLMAVYERLLDGISQNRKKNMDGQLSIFDMMSEPQELLQEDFPDIKEYPANAL 944

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------------VATIRGNNIRL 997
               E+ +LG Y SGHPL  Y+ IL +       +                       + +
Sbjct: 945  LSMEKEMLGLYVSGHPLSEYQSILERNVNLYSSDLFVDDENSTDMEVSGKKLQDSMRVTV 1004

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +V  K+ K T+  + + ++   +     E   FP
Sbjct: 1005 GGIVAYKKTKATKNNNLMAFIYLEDLFGTMELIVFP 1040


>gi|188580262|ref|YP_001923707.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001]
 gi|179343760|gb|ACB79172.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001]
          Length = 1173

 Score = 1063 bits (2750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 518/1054 (49%), Positives = 708/1054 (67%), Gaps = 33/1054 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL VHSSYSLLEG + + +++   AAD+QPA+A+TDTNNLF ALEFS+KA   G
Sbjct: 6    KEVGFVHLHVHSSYSLLEGGVKVADLVKAAAADRQPALALTDTNNLFGALEFSEKAAGTG 65

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPI G QL +  +         + P     +IVLL     GY  L+ L SR +      
Sbjct: 66   IQPIAGLQLTVCFE---APDPMARMPQAGCANIVLLAQDETGYGNLLRLGSRAHFDGPLG 122

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
             +  + +S L E   +GLI LTGG +GP+D +     +  A +RL   K  F  DRLYV 
Sbjct: 123  AAPNLAVSAL-EGNVDGLIGLTGGLTGPLDTSLRAGRADQAARRLEVLKDAFGEDRLYVE 181

Query: 186  LQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +QRH   D R  E ++++LA  + L +VATN   F    DY+AHD L+A+A   +VS + 
Sbjct: 182  IQRHGLDDERAVERELLRLADGNGLGIVATNEPFFAKPGDYDAHDALLAIAEGRLVSDER 241

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R+TP H    R+ M+ +F DLP+AL  +VEIA RC+   +   PILP F      +  
Sbjct: 242  RRRLTPRHAFTTRAAMMELFRDLPDALSASVEIAMRCAVRARTRKPILPNFASVAAGEAP 301

Query: 305  K------------------EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                               +E  EL  +A AGLE+RL Q   A G+  +DYR RL FEL+
Sbjct: 302  PMAEALAEAADAPVQAVAADEPTELCRQAEAGLELRLKQHGTAPGFSEEDYRARLKFELD 361

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI +MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFER
Sbjct: 362  VIVKMKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFER 421

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPDFDIDFC + R+ VIRYVQ +YG  +V QIITFG+L A+  LRDVGR L+
Sbjct: 422  FLNPERVSMPDFDIDFCVEGRERVIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVLE 481

Query: 467  MPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            MPY QVD+L KL+P +PA+PV+L QAI  + + ++A   +P V RL+EIS+KLEGL+RHA
Sbjct: 482  MPYGQVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAIEEEPIVARLIEISKKLEGLHRHA 541

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            STHAAG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+  
Sbjct: 542  STHAAGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRCC 601

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D L QRG++VDL+ IP DD +TY  +    T+ +FQ+ES+GMR+AL  MQ D +EDIIA
Sbjct: 602  TDLLKQRGIEVDLAQIPLDDKKTYEPMGRGETVAVFQVESAGMRKALCEMQADRLEDIIA 661

Query: 646  LVSLYRPGPIDNIVVYNNRKNGK----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            LV+LYRPGP+ NI VY  RK G+    E     HP+++P+LKET G+I+YQEQVM++A++
Sbjct: 662  LVALYRPGPMANIPVYCERKLGRDAGNEASWYSHPMLEPILKETFGIIVYQEQVMEVAKV 721

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            L+GY+L EAD+LRRAMGKKIK EMD Q++RF+ G  ++GI++  A  IF+LLAKFADYGF
Sbjct: 722  LAGYTLGEADMLRRAMGKKIKAEMDAQRDRFVKGCLESGIAQAKANEIFDLLAKFADYGF 781

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NKSHAAAYA+++YQTA++K +YPVEFLAA+MTL++DN +K+ +F QDA++  I + PPSV
Sbjct: 782  NKSHAAAYALVTYQTAYLKANYPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPSV 841

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
            NT  V F V + RI Y+LAAIKGVG +    I+ A  DKPF  L  F  R++ + +N+R 
Sbjct: 842  NTSGVVFDVKEGRILYALAAIKGVGRSAVESIVAARGDKPFKDLACFARRLNPRHVNKRT 901

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE+L+ AGALDC    R +   +++ + K AQ   +  T+   ++F     +    + + 
Sbjct: 902  LENLIAAGALDCIEPDRARAWAAVEPMMKMAQGAAEAETSGITDMFGGV-ASADVALRIP 960

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI---RLA 998
                   + + + E   +GF+ SGHPLD Y PIL K+ ++ + +    +R  +    R+A
Sbjct: 961  PHEFWTHTDKLKRECDAIGFFLSGHPLDEYGPILEKLRVQSWADFCRAVRAGSASVGRIA 1020

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A V+ + +++T+ G+++G V  S+    +EA  F
Sbjct: 1021 ASVLDRSERRTKSGNKLGIVILSDQTGHFEAIIF 1054


>gi|88808431|ref|ZP_01123941.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 7805]
 gi|88787419|gb|EAR18576.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 7805]
          Length = 1173

 Score = 1063 bits (2749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1054 (37%), Positives = 587/1054 (55%), Gaps = 41/1054 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++      PA+A+TD   ++ A+E  +    AGI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPQMVERAKELGMPALALTDHGVMYGAVELLKLCKGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ +          + +  +     +V+L   A GY+ L++L S  +L     + +
Sbjct: 62   IIGNEMYVINGSIDDPQPKKERRY----HLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 117

Query: 130  --RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              R C+   L +  +EGLI+ T    G I +A       VA      ++++FG+  Y+ +
Sbjct: 118  FSRACIDKHLLKQYSEGLIVATACLGGEIPQAIMRERPDVARDVARWYQEVFGEDFYLEI 177

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    DR    ++V++A    + +VATN++ +L+  D EAHD L+ V    ++S + R
Sbjct: 178  QDHGSPEDRIVNVEIVKIAQELGIQVVATNDAHYLTRHDVEAHDALLCVLTGKLISDEKR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             R T   YLK+  EM  +F+D        EA+ NTV +A +      +    +PRF   E
Sbjct: 238  LRYTGTEYLKSEEEMGRLFADHLDPAVVQEAIANTVSVAEKVEDYDILGRYQMPRFPIPE 297

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                       L      GL  RL  G  +     + Y  RL  EL ++ +M F  YFL+
Sbjct: 298  G----HTPVTYLHEVTEQGLRDRL--GLSSNDTIEETYADRLAHELQIMEQMGFPTYFLV 351

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D+I++A++  IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D
Sbjct: 352  VWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDID 411

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
             DFC +RR EVI YV  +YG E+VAQIITF  + +KA L+DV R L +PY   DRL KLI
Sbjct: 412  TDFCIERRGEVIDYVTRRYGEEKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLI 471

Query: 480  PNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            P     P  L+A+  D      F+E    DP V R ++++ ++EG  +    HAAG+VI 
Sbjct: 472  PVVRGKPAKLKAMIGDESPNPEFKEKYDKDPVVQRWVDMAMRIEGTNKTFGVHAAGVVIA 531

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
              PL +LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +AQ    
Sbjct: 532  ADPLDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVAQSSGE 590

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            ++D   +P  D  T+ LL      GIFQLES+GMRQ +  ++P  +EDI ++++LYRPGP
Sbjct: 591  RIDPDKLPPQDQGTFDLLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYRPGP 650

Query: 655  IDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +D   I  + NRK+G+E I   H  ++P+L ET G+++YQEQ+M+IAQ L+GYSL EAD+
Sbjct: 651  LDAGLIPKFINRKHGREAIDFAHSTLEPILSETYGIMVYQEQIMRIAQDLAGYSLGEADL 710

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK   EM K +  F+ GAS+ G+   +A  +F+ +  FA+Y FNKSH+ AY  +
Sbjct: 711  LRRAMGKKKVSEMQKHRGIFVKGASERGVDDKVADELFDQMVLFAEYCFNKSHSTAYGAV 770

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTA++K HYPV ++AA +++     +K++++  +     I++MPP VN    DF   D
Sbjct: 771  TYQTAYLKAHYPVAYMAALLSVNAGASDKVQRYISNCNAMGIEVMPPDVNASGTDFTPRD 830

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             RI + L+A++ +G    R ++ +  AD PF+SL D C RV S  +NRR LESL+  GA+
Sbjct: 831  QRILFGLSAVRNLGDGAIRALIRSREADGPFESLADLCDRVPSSVINRRSLESLIHCGAM 890

Query: 892  DCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE-------- 941
            D      +R QL+  LD +  +A    ++R +   N+F    G+                
Sbjct: 891  DALEPEANRAQLIADLDLLLDWANSRARDRASGQGNLFDLMAGSADGDSDAPSDLSLAPK 950

Query: 942  --KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
                   + S + + E+ ++GFY S HPL    P  R +   G            +   A
Sbjct: 951  AAPVKDYHPSEKLKLEKDLVGFYLSDHPLKQLTPPARLLAPIGLAGLEEQADKAKVSAIA 1010

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            MV   +Q  TRKG R+  +   +     EA  FP
Sbjct: 1011 MVSEMRQVTTRKGDRMAVLQLEDLTGSCEAVVFP 1044


>gi|291615022|ref|YP_003525179.1| DNA polymerase III, subunit alpha [Sideroxydans lithotrophicus ES-1]
 gi|291585134|gb|ADE12792.1| DNA polymerase III, alpha subunit [Sideroxydans lithotrophicus ES-1]
          Length = 1189

 Score = 1063 bits (2748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1079 (39%), Positives = 619/1079 (57%), Gaps = 74/1079 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PSFVHL++HS YS+ +G + +   +    AD  PA+A+TD +N+F  ++F ++A  AGI+
Sbjct: 3    PSFVHLRLHSEYSIADGIVRIGEAVSAAKADAMPALALTDLSNVFGLVKFYKEARGAGIK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+GC + +                     ++LL  +  GY RL  L++R YL +Q +  
Sbjct: 63   PIVGCDVYVSN----------DAVRDQPFRLLLLCQSHAGYLRLCGLLTRAYLENQYRGR 112

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL++ GT+GLI L+G   G +       ++  AE   L +  LF  R Y+ +QR
Sbjct: 113  PEIRTEWLRD-GTDGLIALSGAHLGEVGMTLLNGNASSAEVVALGYADLFPQRFYLEVQR 171

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
                 +       V+LA    LP+VAT+   FL+ +D++AH+  + +A   V++ K R  
Sbjct: 172  FGAAREEQHLRDTVKLASKLALPVVATHPVQFLTIDDFKAHEARVCIAEGYVLNDKRRQR 231

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + T   Y K ++EM ++F+DLPEAL+N+VEIA+RC+  L++  P LP F     + +   
Sbjct: 232  QFTAQQYFKTQAEMAALFADLPEALQNSVEIAKRCNISLKLGKPHLPDFPTPNGESL--- 288

Query: 307  EENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             ++ LR+++  GLE R   L      +     +Y+ RLDFE+N I  MKF GYFLIVADF
Sbjct: 289  -DDFLRSESQRGLEQRMLQLYPDETVRAAKMAEYQARLDFEVNTIINMKFPGYFLIVADF 347

Query: 364  IQWAKK-------NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            I+WAK        N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 348  IRWAKSFRDARFPNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYELLFERFLNPERVSMP 407

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFCQD R+ VI+YV++ YG   V+QI TFG++ +K  +RDVGR L  PY   DRL 
Sbjct: 408  DFDVDFCQDGRELVIQYVRHHYGEACVSQIATFGTMASKGVIRDVGRVLDFPYGLCDRLS 467

Query: 477  KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            KL+P +   PVSL +A   +  F     ++  V+ L+E+ ++LE L R+   HA G++I 
Sbjct: 468  KLVPVEGVKPVSLRKAREMEPEFNAVIASEEGVEELMELGERLEDLTRNVGMHAGGVLIA 527

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA----- 590
               L+   P+Y    S+  V+Q++   +E  GL+KFDFLGL+TLT++  ++ ++      
Sbjct: 528  PGKLTDFCPLYCAEGSESTVSQYDKDDVEAVGLVKFDFLGLRTLTIIDWAVRYIQDLGTG 587

Query: 591  -------------------QRGVKVDLSLIPFDDHETYHLLTTK-GTLGIFQLESSGMRQ 630
                               Q      +  IP DD  TY  +     T  +FQ ES GM+ 
Sbjct: 588  ISDLGSSNAGAGGDAKSQIQNPKSFSIENIPLDDKATYDRIFRTANTTAVFQFESRGMKD 647

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
             L   QPDCI+D+IAL +LYRPGP+D I  Y NRK+ +E+++  HPL++ ++  T G+++
Sbjct: 648  TLVKAQPDCIDDLIALNALYRPGPMDFIPDYINRKHKREQVILPHPLLEKVVGNTYGIMV 707

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVMQ AQ+++GY+L  AD+LRRAMGKK  EEM +Q+  F++GA+KNGI +  A  IF
Sbjct: 708  YQEQVMQSAQVVAGYTLGGADMLRRAMGKKKAEEMAEQRSIFVAGAAKNGIEEKKANEIF 767

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            + + KFA YGFNKSHAAAY++++YQTA++K HYP  F+A++MT EM N +K+  F QDA 
Sbjct: 768  DTMEKFAGYGFNKSHAAAYSLVAYQTAYLKCHYPAAFMASTMTSEMVNTDKVSFFYQDAV 827

Query: 811  QFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
            Q  ++I+ P +N+ C  F+ V +  I Y L A+KG G     +I+ A A  PF  L DFC
Sbjct: 828  QQGLKILAPDINSSCFRFQPVDEKTIAYGLGAVKGTGEAAVENIVAARAAGPFRDLFDFC 887

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             RVD + +NRR +E+L+ AGA D     R QLL SLD     A+  +K R     ++F  
Sbjct: 888  HRVDKRIVNRRAIEALIRAGAFDSISDHRYQLLASLDAALGSAE--QKARAANQNSLFGD 945

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
            ++   +  + +          +   E+  LGFY SGHP   +   L         +    
Sbjct: 946  DEA-HAMPVQMADVPRWKMREQLAQEKTALGFYLSGHPYQEFAAELSNFVKHRLADITPD 1004

Query: 990  I----------------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I                   +I LA MV   +  +TR+G  +  VT  + +   E   F
Sbjct: 1005 IVTPAGGNSGYGGGRRNNAKSIVLAGMVSGVRVLQTRRGK-MAVVTLDDGSAALEVVVF 1062


>gi|251778887|ref|ZP_04821807.1| DNA polymerase III subunit alpha [Clostridium botulinum E1 str. 'BoNT
            E Beluga']
 gi|243083202|gb|EES49092.1| DNA polymerase III subunit alpha [Clostridium botulinum E1 str. 'BoNT
            E Beluga']
          Length = 1202

 Score = 1063 bits (2748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1081 (35%), Positives = 598/1081 (55%), Gaps = 66/1081 (6%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             +   FVHL +H+ YSLL+G+  +  I+ K       +IAITD   L+  ++F + A   
Sbjct: 14   NEEKDFVHLHLHTGYSLLDGSGKIKEIMAKTKELGMNSIAITDHGVLYGLVDFYKAAIEY 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PI+GC++ +  +    M  +      +   +VLLV    GY+ L+++VS   +    
Sbjct: 74   GIKPILGCEVYVAGKS---MKIKQPDKDNSTYHLVLLVKNEIGYRNLMKIVSTASIEG-F 129

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R+   +L +  ++G+I L+    G +       + + A++  L +K++F +  Y+ 
Sbjct: 130  YYKPRVDHEYL-KAHSDGIIALSACLGGEVQSHELKGNYEKAKETALLYKEIFKENFYLE 188

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H   ++ +   + ++L+    +PLVATN+  +L ++ Y++HD+LM +     V   +
Sbjct: 189  IQNHGMDEQRKVNEENIKLSKELGIPLVATNDVHYLKKDGYKSHDILMCIQTGKTVDDVN 248

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R   D  YLK+  EM  +FS +PEALENTV+I+ +C++  + H   LP+F   E +  
Sbjct: 249  RRRYPSDQFYLKSPEEMWEMFSYIPEALENTVKISEQCNYEYKFHESKLPKFPLPEGE-- 306

Query: 304  QKEEENELRNKAVAGLEVRLAQ---------------GAIAKGYHAQDYRQRLDFELNVI 348
              E  N L+N    GL  R  +                  +K    ++   RL++EL +I
Sbjct: 307  --EPYNYLKNTCYMGLIERYEEFKEFRGKDLNYDKLDDLKSKNDSVKELIDRLEYELQII 364

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M +  YFLIV DFI++A  N IP GPGRGS AGS+ AY L IT IDP+++SL+FERFL
Sbjct: 365  KQMGYIDYFLIVWDFIKFANDNGIPTGPGRGSAAGSIIAYTLGITKIDPIKYSLIFERFL 424

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D DFC +RR EVI YV  KYG + V+QIITFG++ A+A +RDVGRA+   
Sbjct: 425  NPERVSMPDIDSDFCYERRQEVIDYVVEKYGEDNVSQIITFGTMAARACIRDVGRAMNYS 484

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            YS+VD++CK+IP      +  +A+  +   +E    D  V  L+++S+ LEGL RH+STH
Sbjct: 485  YSEVDKICKMIPTMLGITIE-KALDFNPELKEIYDKDDRVKSLIDMSKDLEGLPRHSSTH 543

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+VI   PL Q VP+ +    ++ VTQF M  +E+ GL+K DFLGL+TLT++ ++L  
Sbjct: 544  AAGVVIASTPLVQYVPLQK--NDEMIVTQFGMTTLEELGLLKMDFLGLRTLTVMNEALKI 601

Query: 589  LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + + R + +DL  I F+D E Y ++    T G+FQLES GM   ++ ++PD +EDIIA +
Sbjct: 602  IKENRNIDIDLDKIDFEDKEVYKMIGEGKTAGVFQLESPGMVSFMKELKPDSLEDIIAGI 661

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            SLYRPGP+  I  Y   K   EK+    P ++ +L  T GV++YQEQVM+I + L+GYS+
Sbjct: 662  SLYRPGPMAEIPRYIECKRNPEKVKYEAPELEEILDVTYGVMVYQEQVMEIVRKLAGYSM 721

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFIS-----------GASKNGISKTIAVNIFELLAKF 756
              +D++RRAM KK  + M+++++ FI            G  +NGIS+  A  IF+ +  F
Sbjct: 722  GRSDMVRRAMSKKKHKVMEEERKNFIHGIIENDEVVVPGCIRNGISEEAANKIFDNMMDF 781

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A Y FNKSHAAAYAV+ YQTA++  +YPVE +AA +   M + EK+  +   A +  IQ+
Sbjct: 782  ASYAFNKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSFMGSSEKVVYYISKAEELGIQV 841

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK 875
            +PP +N     F V    I + LAAIK VG      +++   +   FDSL DF S++D  
Sbjct: 842  LPPDINESFAKFTVKGETIRFGLAAIKNVGMNLINSVVKTRENKGKFDSLFDFISKIDLS 901

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
             +N+R +ESL+ +G  D F   R +LL   + +        K   +   ++FA +   + 
Sbjct: 902  AINKRTIESLIKSGTFDSFKIYRSKLLAVYEKMVDSISNDRKRNIDGQISLFASD-DIYV 960

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG---------------- 979
             +I     +  +       E+ + G Y SGHPLD Y   L+                   
Sbjct: 961  PEIEYPNINEFDKRSLLTMEKEMTGLYISGHPLDDYAQSLKFQTSNEIGKIFSHHELLDD 1020

Query: 980  ---IKGYEESVATIRG----NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               I+  ++ +    G    + + L  ++    +K TR  + + ++   +     E   F
Sbjct: 1021 TLEIQMLDDVINNESGINDNDRVILGGILTQVNKKVTRNNTIMAFLQLEDLTGTIEVIVF 1080

Query: 1033 P 1033
            P
Sbjct: 1081 P 1081


>gi|89092103|ref|ZP_01165058.1| DNA polymerase III subunit alpha [Oceanospirillum sp. MED92]
 gi|89083838|gb|EAR63055.1| DNA polymerase III subunit alpha [Oceanospirillum sp. MED92]
          Length = 1163

 Score = 1062 bits (2747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1049 (40%), Positives = 612/1049 (58%), Gaps = 43/1049 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+FVHL+VH+ +SL++G + +  ++     +  PA+ +TD  N F  ++F + A   GI+
Sbjct: 4    PTFVHLRVHTEFSLVDGLVRVKELVAAAKKEGMPAVGMTDQTNFFGLVKFFKAATGNGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG--K 126
            PI G  L ++  D          P      I LLV  A+GY  L+EL+S+ Y   Q    
Sbjct: 64   PICGSDLWVENTD---------EPGGEPYRITLLVRNAQGYLNLMELISQAYAEGQNIIP 114

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +   W+ E   EGLI L+G   G + RA      Q A + L  +  +F D  Y+ +
Sbjct: 115  DMALVKPEWV-EAKAEGLIALSGAKKGEVGRAILAEKGQ-APEVLQRWMGVFKDSFYLEV 172

Query: 187  QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR     D       V+LA     PLVATN  +F+  +D+EAH+V + +  S  +    R
Sbjct: 173  QRTGRVGDEQIVHGSVELAKQFGCPLVATNEVMFVKADDFEAHEVRVCINQSRTLEDPTR 232

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   Y +++ EM ++FSD+P AL+N+VEIA+RC+  +++    LP++   E   + 
Sbjct: 233  PKEYSEQQYFRSQREMEALFSDIPSALQNSVEIAKRCNIDIEIGTYYLPKYPIPEGMLM- 291

Query: 305  KEEENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
               ++  R  +  GLE RL     +         Q+Y  RL+FEL++I +M F GYFLIV
Sbjct: 292  ---DDFFRKVSFDGLEERLEILLDRDDPEYDAKRQEYIDRLEFELDIIIQMGFPGYFLIV 348

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI+W K+N +PVGPGRGSGAGS+ AYA  ITD+DPL + LLFERFLNP+R+SMPDFDI
Sbjct: 349  MDFIKWGKENGVPVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMPDFDI 408

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D RD+VI YV   YG + V+QI+TFG++ AKA +RDV R    P+   DRL KLIP
Sbjct: 409  DFCMDNRDKVIDYVARTYGRDAVSQIVTFGTMAAKAVVRDVARVQGKPFGLADRLSKLIP 468

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +P   +  +A+  +    E   +      +++++ KLEG+ R    HA G+VI    L+
Sbjct: 469  FEPGITLK-KALDQEPMLCEFIESSEEAQEIMDMAYKLEGVTRGVGKHAGGVVIAPTKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVK 595
                 Y D   +  VTQF+   +E+AGL+KFDFLGL+TLT++  +L  +      Q    
Sbjct: 528  DFAATYCDEEGNGLVTQFDKGDVEEAGLVKFDFLGLRTLTIIDWALQTVNRIRDKQGEEP 587

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D++LI  +D +T+ LL    T  +FQLESSGM+  +  + P   EDI+ALV+L+RPGP+
Sbjct: 588  LDIALIDLEDKKTFDLLQAAETTAVFQLESSGMKDLVRRLLPSRFEDIVALVALFRPGPL 647

Query: 656  DNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V  + NRK+G+ ++   HP      + P+L+ T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 648  QSGMVDDFINRKHGRAEMAWPHPDYQLDSLQPVLEPTYGIILYQEQVMQIAQVMAGYTLG 707

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  F+ G+ +NGI + +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 708  GADMLRRAMGKKKPEEMAKQRVSFLDGSEQNGIDRDLAGNIFDLVEKFAGYGFNKSHSAA 767

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQTAW+K HYP  F+AA M+ +M N +K+  F ++ R   I    P+VNT    F
Sbjct: 768  YALVSYQTAWLKAHYPAPFMAAVMSSDMQNTDKVVIFIEECRNMGIPPALPNVNTGEYMF 827

Query: 829  KVGDNRIY-YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V D  +  Y L AIKGVG      I+EA A+   F+ L DFC RV +KKLN+RVLE+LV
Sbjct: 828  TVNDEGVIVYGLGAIKGVGEGPIEAIVEARAEGGEFNDLFDFCERVGAKKLNKRVLEALV 887

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---F 943
             +GA+DC G  R  L +++ +  K A    KN      ++F   +   SD+ T E     
Sbjct: 888  RSGAVDCLGAERAVLWEAIPDALKAADQAAKNSDAGMFDLFGEVEA-ESDRCTYEDYRNV 946

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                   R   E+  LG Y +GHP+D Y+  L+    +   E     RG   ++A +VV 
Sbjct: 947  RSWTDKERLAGEKDTLGLYLTGHPIDEYEAELKHFISRRIVELQPA-RGQTQKMAGLVVD 1005

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + KKT+KG  + +VT  + +   +   F
Sbjct: 1006 LRLKKTKKGDNLCFVTLDDRSARIDVTLF 1034


>gi|296106547|ref|YP_003618247.1| DNA polymerase III subunit alpha [Legionella pneumophila 2300/99
            Alcoy]
 gi|295648448|gb|ADG24295.1| DNA polymerase III subunit alpha [Legionella pneumophila 2300/99
            Alcoy]
          Length = 1148

 Score = 1062 bits (2747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1039 (41%), Positives = 624/1039 (60%), Gaps = 35/1039 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VH+ +SL++G + +  ++  + A     +A+TD  NLF+A++  + A  AGI+P
Sbjct: 4    RFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L                    + S+VLL     GY+ L  LVS+ Y   Q     
Sbjct: 64   IIGSDLPCH----------DLETPDNIFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHGQP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+ L W+ E  ++GLI L+GG  G I +A   N   +A KR L +  LF +R Y+ +QR 
Sbjct: 114  RVQLQWIPEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRT 172

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
               D      ++V LA   +LPLVATN+  F++E+D++AH+  + +     ++   R  +
Sbjct: 173  GRADELHYNEKLVALADELQLPLVATNDVRFINEDDFDAHEARVCIHEGYTLADPRRVQQ 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YL++  EM  +FSDLP AL+NTVEI++RC+  L +    LP F   +   +    
Sbjct: 233  YSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLDLGHNYLPNFPIPDGTTV---- 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYH-----AQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            E  L + +  GLE RL Q    K          +Y +RL  EL+VI  M F+GYFLIVAD
Sbjct: 289  EAYLSHLSEVGLEERLKQLFRDKSEGELLAARGEYDKRLKIELDVINNMGFAGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI YV  KYG + V+QIITFG++ AKA +RDVGR L  PY  VD+L KLIP +
Sbjct: 409  CMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +S +A+  +   R     +  V  L +++ KLEG+ R+A  HA G+VI    L+  
Sbjct: 469  LGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAPSQLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
              +Y +  S   V+QF+   +E  GL+KFDFLGL+TLT++  +L  + ++        +D
Sbjct: 528  TAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPID 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +S IP  D  T+ LL    T  +FQLES GM++ +  +QPDC EDIIALV+L+RPGP+ +
Sbjct: 588  ISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  + +RK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L  AD+LRR
Sbjct: 648  GMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRR 707

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ+E F  GA   G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++YQ
Sbjct: 708  AMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQ 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TAW+K HYP  F+AA M+ +MDN +K+  F  +     +Q++PPS+N     F V D + 
Sbjct: 768  TAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFTVSDEKT 827

Query: 836  -YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
              Y L AIKGVG +    I++    + PF  L  FC R+D +K+NRRV+E+L+ +GA D 
Sbjct: 828  IIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDV 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            +   R  L  SL+   K A+   +N+++   ++F+  +   +D+    +    + + R E
Sbjct: 888  WKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDK-ADEQNYVESKSWSEAQRLE 946

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ VLGFY +GHP D Y+  L    I    +   ++    I + A VV+ ++  T++G 
Sbjct: 947  GEREVLGFYLTGHPADQYRRELGDF-IVPVSQLNPSLHKKAI-ICAQVVAIRKIITKRGK 1004

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            ++  +   +     +A  F
Sbjct: 1005 KLVIIGMDDATARIDAVVF 1023


>gi|85704828|ref|ZP_01035929.1| DNA polymerase III subunit alpha [Roseovarius sp. 217]
 gi|85670646|gb|EAQ25506.1| DNA polymerase III subunit alpha [Roseovarius sp. 217]
          Length = 1166

 Score = 1062 bits (2747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 503/1057 (47%), Positives = 688/1057 (65%), Gaps = 47/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP F+HL+VH+ YSLLEGA+ L  +    AA   PA+A+TDTNN+F+ALEFS  A  
Sbjct: 1    MSTSPRFIHLRVHTEYSLLEGAIRLKKLPSLCAAAGMPAVAVTDTNNMFAALEFSVSAQG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+D          G+   P  P +VLL     GY+ L++L S +YL   
Sbjct: 61   AGVQPIMGCQIDLDY----IALAPGERTKPPAP-LVLLGQNERGYENLMKLNSCLYLRGD 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     + LS L+    EG+I L+GG  GP+ R         AE  +    + FGDRLYV
Sbjct: 116  G-SLPHVTLSELKR-HAEGVICLSGGPDGPVGRLLQAGQRPGAEALMQRLMRAFGDRLYV 173

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH         +R  E   +++AY   LPLVATN+  F   + YEAHD ++ VA   
Sbjct: 174  ELQRHPSDGGAPEAERLTERGHIEMAYAMGLPLVATNDVYFPKSDMYEAHDAMLCVADGA 233

Query: 239  VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q   R R+TP HY K++ EM ++F+DLPEALEN+VEIA RC+F      PILP+F +
Sbjct: 234  YVDQSAPRRRLTPQHYFKSQDEMAALFADLPEALENSVEIATRCAFGCYKRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E +        ELR +A AGL+ RLA   I      ++Y +RL+FEL +I  M F GYF
Sbjct: 294  DEVE--------ELRRQARAGLQSRLA--VIPHAAPVEEYEERLEFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK  +IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKDQDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG +RV QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIQYVQEKYGRDRVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+ +A+AD+ R RE    +  VDRLL  +Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALADEPRLREEAKNEEVVDRLLTYAQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
            RPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G   
Sbjct: 524  RPLDELVPVYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDMIRKTGRPL 583

Query: 596  -----------------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                              D+  IP DD ++Y L  +  T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  NVAADGTELYQPPEGFEYDIGAIPLDDEKSYRLYASAKTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG +++ SIHP ID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPTYCEVKNGLKELESIHPSIDYILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  GA +NG++K  A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMENGVNKRKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++   +   
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLGLDWA 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
             P VN     F V D  ++Y+L A+K VG    + I    +D+ F +L D   RVD K++
Sbjct: 824  GPCVNHSEATFDVRDGVLHYALGALKNVGVEAMKLITAGRSDRSFATLYDVAQRVDLKRV 883

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE L  AGA D    +R ++ +S++ +  Y+  + + + +   ++F  E G    +
Sbjct: 884  GKRPLEMLARAGAFDALDRNRRRVFESIEALMSYSAAIHEQKNSNQVSLFG-EAGDDLPE 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--I 995
              L        + R   E + +GFY SGHPLD Y  +LR+  +K  +E  A        +
Sbjct: 943  PRLAPVDDWLPAERLTEEFKAVGFYLSGHPLDDYMTVLRRQDVKTLDEVTAQAERGPALV 1002

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++A +V  +Q++K+ +G+R  +   S+    +E   F
Sbjct: 1003 KMAGVVAGRQERKSARGNRFAFAQLSDTTGSFEVTIF 1039


>gi|218529177|ref|YP_002419993.1| DNA polymerase III subunit alpha [Methylobacterium chloromethanicum
            CM4]
 gi|218521480|gb|ACK82065.1| DNA polymerase III, alpha subunit [Methylobacterium chloromethanicum
            CM4]
          Length = 1173

 Score = 1062 bits (2747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 522/1054 (49%), Positives = 708/1054 (67%), Gaps = 33/1054 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL VHSSYSLLEG +   +++   AAD+QPA+A+TDTNNLF ALEFS+ A  AG
Sbjct: 6    KEVGFVHLHVHSSYSLLEGGVKAGDLVKAAAADRQPALALTDTNNLFGALEFSEYAAKAG 65

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPI G QL I  +         + P     +IVLL     GY  L+ L SR +      
Sbjct: 66   IQPIAGLQLTICFE---APDPMARLPQAGCANIVLLAQDETGYGNLLRLGSRAHFDGPLG 122

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
             +  + +S L E   EGLI LTGG SGP+D +        A +RL   K  F  + LYV 
Sbjct: 123  AAPNLAVSVL-EGNVEGLIGLTGGLSGPLDTSLRAGRVDQAARRLEILKGAFGEEHLYVE 181

Query: 186  LQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +QRH   D R  E ++++LA T+ L +VATN   F    DY+AHD L+A+A   +VS + 
Sbjct: 182  IQRHGLDDERAVERELLRLADTNGLGIVATNEPFFAKPGDYDAHDALLAIAEGRLVSDER 241

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI-------- 296
            R R+TP H    R+ M+ +F DLP+AL  +VEIA RCS+  +   PILP F         
Sbjct: 242  RRRLTPRHAFTTRAAMMELFRDLPDALSASVEIAMRCSYRARTRKPILPNFASVAAGEAP 301

Query: 297  ----------EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                      E     +  +E  EL  +A AGLE+RL Q   A G+  +DYR RL FEL+
Sbjct: 302  PMADALAEAAETPVQAVAADEPTELCRQAEAGLELRLKQHGTAPGFTEEDYRARLKFELD 361

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI +MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFER
Sbjct: 362  VIVKMKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFER 421

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPDFDIDFC + R+ VIRYVQ +YG  +V QIITFG+L A+  LRDVGR L+
Sbjct: 422  FLNPERVSMPDFDIDFCVEGRERVIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVLE 481

Query: 467  MPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            MPY QVD+L KL+P +PA+PV+L QAI  + + ++A   +P V RL+EIS+KLEGL+RHA
Sbjct: 482  MPYGQVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAIEEEPIVARLIEISKKLEGLHRHA 541

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            STHAAG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+  
Sbjct: 542  STHAAGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRCC 601

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D L QRG++VDL+ IP DD +TY  +    T+ +FQ+ES+GMR+AL  MQ D +EDIIA
Sbjct: 602  TDLLKQRGIEVDLAQIPLDDKKTYEPMGRGETVAVFQVESAGMRKALCEMQADRLEDIIA 661

Query: 646  LVSLYRPGPIDNIVVYNNRKNGK----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            LV+LYRPGP+ NI VY  RK G+    E     HP+++P+LKET G+I+YQEQVM++A++
Sbjct: 662  LVALYRPGPMANIPVYCERKLGRDAGNEASWYSHPMLEPILKETFGIIVYQEQVMEVAKV 721

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            L+GY+L EAD+LRRAMGKKIK EMD Q++RF+ G ++NG++K  A  IF+LLAKFADYGF
Sbjct: 722  LAGYTLGEADMLRRAMGKKIKAEMDAQRDRFVKGCTENGLTKAKADEIFDLLAKFADYGF 781

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NKSHAAAYA+++YQTA++K ++PVEFLAA+MTL++DN +K+ +F QDA++  I + PPSV
Sbjct: 782  NKSHAAAYALVTYQTAYLKANHPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPSV 841

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
            NT  V F V + RI Y+LAAIKGVG +    I+ A  DKPF  L  F  R++ + +N+R 
Sbjct: 842  NTSGVVFDVREGRILYALAAIKGVGRSAVESIVAARGDKPFKDLACFARRLNPRHVNKRT 901

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE+L+ AGALDC    R +   +++ + K AQ   +  T+   ++F     +    + + 
Sbjct: 902  LENLIAAGALDCIEPDRARAWAAVEPMMKMAQGAAEAETSGITDMFGGV-ASVDVALRIP 960

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI---RLA 998
                   + + + E   +GF+ SGHPLD Y PIL K+ ++ + +    +R       R+A
Sbjct: 961  PHEFWTHTDKLKRECDAIGFFLSGHPLDEYGPILEKLRVQSWADFCRAVRAGTASVGRIA 1020

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A V+ + +++T+ G+++G V  S+    +EA  F
Sbjct: 1021 ASVLDRSERRTKSGNKLGIVILSDQTGHFEAIIF 1054


>gi|54293935|ref|YP_126350.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Lens]
 gi|53753767|emb|CAH15225.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Lens]
          Length = 1148

 Score = 1062 bits (2746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1039 (41%), Positives = 624/1039 (60%), Gaps = 35/1039 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VH+ +SL++G + +  ++  + A     +A+TD  NLF+A++  + A  AGI+P
Sbjct: 4    RFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L                   T+ S+VLL     GY+ L  LVS+ Y   Q     
Sbjct: 64   IIGSDLPCH----------DLEAPDTIFSLVLLCQDTTGYKNLTCLVSKAYQEGQYHGQP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+ L W+ E  ++GLI L+GG  G I +A   N   +A KR L +  LF +R Y+ +QR 
Sbjct: 114  RVQLQWIPEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRT 172

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
               D      +++ LA   +LPLVATN+  F+ E+D++AH+  + +     ++   R  +
Sbjct: 173  GRADELHYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRVQQ 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YL++  EM  +FSDLP AL+NTVEI++RC+  L++    LP F   +   +    
Sbjct: 233  YSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDGTTV---- 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYH-----AQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            E  L + +  GLE RL Q    K          +Y +RL  EL VI  M F+GYFLIVAD
Sbjct: 289  EAYLSHLSEIGLEERLKQLFRDKSEGELLAARGEYDKRLKIELAVINNMGFAGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI YV  KYG + V+QIITFG++ AKA +RDVGR L  PY  VD+L KLIP +
Sbjct: 409  CMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +S +A+  +   R     +  V  L +++ KLEG+ R+A  HA G+VI    L+  
Sbjct: 469  LGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAPSQLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
              +Y +  S   V+QF+   +E  GL+KFDFLGL+TLT++  +L  + ++        +D
Sbjct: 528  TAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPID 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +S IP  D  T+ LL    T  +FQLES GM++ +  +QPDC EDIIALV+L+RPGP+ +
Sbjct: 588  ISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  + +RK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L  AD+LRR
Sbjct: 648  GMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRR 707

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ+E F  GA   G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++YQ
Sbjct: 708  AMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQ 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TAW+K HYP  F+AA M+ +MDN +K+  F  +     +Q++PPS+N     F V D + 
Sbjct: 768  TAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFTVSDEKT 827

Query: 836  -YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
              Y L AIKGVG +    I++    + PF  L  FC R+D +K+NRRV+E+L+ +GA D 
Sbjct: 828  IIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDV 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            +   R  L  SL+   K A+   +N+++   ++F+  +   +D+    +    + + R E
Sbjct: 888  WKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDK-ADEQNYVESKSWSEAQRLE 946

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ VLGFY +GHP D Y+  L    I    +   ++    I + A VV+ ++  T++G 
Sbjct: 947  GEREVLGFYLTGHPADQYRRELGDF-IVPVGQLNPSLHKKAI-ICAQVVAIRKIITKRGK 1004

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            ++  +   +     +A  F
Sbjct: 1005 KLVIIGMDDATARIDAVVF 1023


>gi|226945926|ref|YP_002800999.1| DNA polymerase III subunit alpha [Azotobacter vinelandii DJ]
 gi|226720853|gb|ACO80024.1| DNA polymerase III alpha subunit [Azotobacter vinelandii DJ]
          Length = 1176

 Score = 1062 bits (2746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1065 (39%), Positives = 612/1065 (57%), Gaps = 58/1065 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL+VH+ +SL++G + +  ++  +A    PA+A+TD +N+ S ++F + A A G+
Sbjct: 2    SVSFVHLRVHTEFSLVDGLVRVKPLIKAVAGAGMPAVAVTDQSNMCSLVKFYKAAMAGGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ-GK 126
            +PI G  + +              P   +  + LL   A+GY+ L ELVSR +   Q G 
Sbjct: 62   KPICGADIWLA----------SAEPDAPLSRLTLLAMDAKGYRNLTELVSRGWTEGQHGD 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V I   W++E   EG+I L+G   G I +A        A   L  +  +F +R Y+ +
Sbjct: 112  GLVIIQRDWVKEAA-EGVIALSGAKEGEIGQALLNGHVDQAAALLEEWLAVFPERFYLEV 170

Query: 187  QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR     D       V+LA  +  PLVATN+  FL +ED+EAH+  + +     +    R
Sbjct: 171  QRTGRVGDEEYLHAAVELADRYGAPLVATNDVRFLKQEDFEAHETRVCIGEGRTLGDPRR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   +   YLK  +EM  +FSDLPEALEN+VEIARRC+  +++    LP F       I 
Sbjct: 231  PRNYSDQQYLKTPAEMWELFSDLPEALENSVEIARRCNIEVRLGKYFLPNFPVPAGMTI- 289

Query: 305  KEEENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               ++ LR  A  GLE RLA     +         + Y +RL+FELN I +M F GYFLI
Sbjct: 290  ---DDYLRQVAYEGLEERLAVLWPQETTPDYADKREVYVERLEFELNTIIQMGFPGYFLI 346

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 347  VMDFIKWAKNNGVPVGPGRGSGAGSLVAYALKITDLDPLAYDLLFERFLNPERISMPDFD 406

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI YV + YG   V+QIITFGS+ AKA +RDV R     Y   DRL K+I
Sbjct: 407  VDFCMDGRDRVIDYVADTYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMI 466

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +    +  +A   +   RE    D     + +++ KLEG+ R    HA G+VI    L
Sbjct: 467  PFEVGMTLE-KAYEQEEMLREFLKNDEEAQEIWDMALKLEGITRGTGKHAGGVVIAPTKL 525

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ + +   +    
Sbjct: 526  TDFAPIACDADGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETIHREQRRRGET 585

Query: 597  ---DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
               D+  I  DD  TY LL    T  +FQLES GM++ ++ ++PD IED+IALV+L+RPG
Sbjct: 586  ELVDIDRIALDDKATYALLQRAETTAVFQLESRGMKELIKKLKPDNIEDMIALVALFRPG 645

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V  + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ+++GY+
Sbjct: 646  PLQSGMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYT 705

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F+ G +KNGI   +A NIF+L+ KFA YGFNKSH+
Sbjct: 706  LGGADMLRRAMGKKKPEEMAKQRGGFVEGCAKNGIDAELAGNIFDLVEKFAGYGFNKSHS 765

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAY ++SYQTAW+KT YP  F+AA ++ +M N +K+    ++ R   ++I+ P VN    
Sbjct: 766  AAYGLVSYQTAWLKTRYPAPFMAAVLSADMHNTDKVVTLIEECRSMKLRIVAPDVNNSEF 825

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES 884
             F V D  RI Y L AIKGVG      I+E   A  PF  L DFC+RVD K++N+R LE+
Sbjct: 826  MFTVDDEGRIVYGLGAIKGVGEGPVEAIVECRAAGGPFTDLFDFCARVDLKRINKRTLEA 885

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+  GALD  G                +R  LL +++   + A+   ++  + H ++F  
Sbjct: 886  LIRGGALDRLGPYFADEPKAYQANIDRNRAVLLAAVEEAVQAAEQTARSADSGHLDLFGG 945

Query: 930  EKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                    +          +   R + E+  LG Y +GHP+D Y+  +R+   +   E  
Sbjct: 946  LFAEPEADVYANHRNARELSLKDRLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELR 1005

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A ++V+ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1006 PARELQ--TIAGLIVNLRVMKNKKGDKMGFITLDDRSARIEASLF 1048


>gi|163850481|ref|YP_001638524.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1]
 gi|240137543|ref|YP_002962014.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1]
 gi|163662086|gb|ABY29453.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1]
 gi|240007511|gb|ACS38737.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1]
          Length = 1173

 Score = 1062 bits (2746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 522/1054 (49%), Positives = 708/1054 (67%), Gaps = 33/1054 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL VHSSYSLLEG +   +++   AAD+QPA+A+TDTNNLF ALEFS+ A  AG
Sbjct: 6    KEVGFVHLHVHSSYSLLEGGVKAGDLVKAAAADRQPALALTDTNNLFGALEFSEYAAKAG 65

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPI G QL I  +         + P     +IVLL     GY  L+ L SR +      
Sbjct: 66   IQPIAGLQLTICFE---APDPMARLPQAGCANIVLLAQDETGYGNLLRLGSRAHFDGPLG 122

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
             +  + +S L E   EGLI LTGG SGP+D +        A +RL   K  F  + LYV 
Sbjct: 123  AAPNLAVSAL-EGNVEGLIGLTGGLSGPLDTSLRAGRVDQAARRLEILKGAFGEEHLYVE 181

Query: 186  LQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +QRH   D R  E ++++LA T+ L +VATN   F    DY+AHD L+A+A   +VS + 
Sbjct: 182  IQRHGLDDERAVERELLRLADTNGLGIVATNEPFFAKPGDYDAHDALLAIAEGRLVSDER 241

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI-------- 296
            R R+TP H    R+ M+ +F DLP+AL  +VEIA RCS+  +   PILP F         
Sbjct: 242  RRRLTPRHAFTTRAAMMELFRDLPDALSASVEIAMRCSYRARTRKPILPNFASVAAGEAP 301

Query: 297  ----------EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                      E     +  +E  EL  +A AGLE+RL Q   A G+  +DYR RL FEL+
Sbjct: 302  PMADALAEAAETPVQAVAADEPTELCRQAEAGLELRLKQHGTAPGFTEEDYRARLKFELD 361

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI +MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFER
Sbjct: 362  VIVKMKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFER 421

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPDFDIDFC + R+ VIRYVQ +YG  +V QIITFG+L A+  LRDVGR L+
Sbjct: 422  FLNPERVSMPDFDIDFCVEGRERVIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVLE 481

Query: 467  MPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            MPY QVD+L KL+P +PA+PV+L QAI  + + ++A   +P V RL+EIS+KLEGL+RHA
Sbjct: 482  MPYGQVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAIEEEPIVARLIEISKKLEGLHRHA 541

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            STHAAG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+  
Sbjct: 542  STHAAGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRCC 601

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             D L QRG++VDL+ IP DD +TY  +    T+ +FQ+ES+GMR+AL  MQ D +EDIIA
Sbjct: 602  TDLLKQRGIEVDLAQIPLDDKKTYEPMGRGETVAVFQVESAGMRKALCEMQADRLEDIIA 661

Query: 646  LVSLYRPGPIDNIVVYNNRKNGK----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            LV+LYRPGP+ NI VY  RK G+    E     HP+++P+LKET G+I+YQEQVM++A++
Sbjct: 662  LVALYRPGPMANIPVYCERKLGRDAGNEASWYSHPMLEPILKETFGIIVYQEQVMEVAKV 721

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            L+GY+L EAD+LRRAMGKKIK EMD Q++RF+ G ++NG++K  A  IF+LLAKFADYGF
Sbjct: 722  LAGYTLGEADMLRRAMGKKIKAEMDAQRDRFVKGCTENGLTKAKADEIFDLLAKFADYGF 781

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NKSHAAAYA+++YQTA++K ++PVEFLAA+MTL++DN +K+ +F QDA++  I + PPSV
Sbjct: 782  NKSHAAAYALVTYQTAYLKANHPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPSV 841

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
            NT  V F V + RI Y+LAAIKGVG +    I+ A  DKPF  L  F  R++ + +N+R 
Sbjct: 842  NTSGVVFDVREGRILYALAAIKGVGRSAVESIVAARGDKPFKDLACFARRLNPRHVNKRT 901

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE+L+ AGALDC    R +   +++ + K AQ   +  T+   ++F     +    + + 
Sbjct: 902  LENLIAAGALDCIEPDRARAWAAVEPMMKMAQGAAEAETSGITDMFGGV-ASVDVALRIP 960

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI---RLA 998
                   + + + E   +GF+ SGHPLD Y PIL K+ ++ + +    +R       R+A
Sbjct: 961  PHEFWTHTDKLKRECDAIGFFLSGHPLDEYGPILEKLRVQSWADFCRAVRAGTASVGRIA 1020

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A V+ + +++T+ G+++G V  S+    +EA  F
Sbjct: 1021 ASVLDRSERRTKSGNKLGIVILSDQTGHFEAIIF 1054


>gi|114765486|ref|ZP_01444596.1| DNA polymerase III subunit alpha [Pelagibaca bermudensis HTCC2601]
 gi|114542196|gb|EAU45227.1| DNA polymerase III subunit alpha [Roseovarius sp. HTCC2601]
          Length = 1174

 Score = 1062 bits (2746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 509/1062 (47%), Positives = 689/1062 (64%), Gaps = 56/1062 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VH+ YSLLEGA+ L  +     A + PA+A+TDTNNLFSALEFS  A  AG+Q
Sbjct: 4    PRFIHLRVHTEYSLLEGAIRLKKLPGLCEAMEMPAVAVTDTNNLFSALEFSVTASGAGVQ 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+GCQ+D+           G+ P    P +VLL     GY+ L++L S +YL   G + 
Sbjct: 64   PIVGCQVDL----RYVQPAPGERPKAPAP-VVLLAQNERGYENLMKLNSCLYLRRDG-EL 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              + L  L+E G EG+I L+GG  GP+ R    N    A+  L    +++ DRLYV LQR
Sbjct: 118  AHVLLDELEEYG-EGVICLSGGPDGPVGRLLRENHRAAAQTLLTRLHQIYQDRLYVELQR 176

Query: 189  HRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            H G D      R  E   V++AY   +PLVATN+  F  E  YEAHD ++ +A    V Q
Sbjct: 177  HPGEDGLPEAERLTERGHVEMAYEMGIPLVATNDVYFPKENMYEAHDAMICIAEGAYVDQ 236

Query: 243  KD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            ++ R R+TP HYLK   EM ++F+DLPEALENTVEIA+RC+F+     PILP+F + E  
Sbjct: 237  QEPRRRLTPQHYLKTPQEMATLFADLPEALENTVEIAKRCAFMAYRRDPILPKFADDEVV 296

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                    ELR +A  GL+ RL    I      + Y++RLDFEL +I  M F GYFLIVA
Sbjct: 297  --------ELRRQANEGLQKRL--SVIPHAVTVEKYQERLDFELGIIEGMGFPGYFLIVA 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDID
Sbjct: 347  DFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDID 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K+IP 
Sbjct: 407  FCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSKMIPV 466

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   PVS+ +A+ D+ R RE    +  VDRLL+   ++EGL R A THAAG+VI DRP  
Sbjct: 467  EGVKPVSIEKALQDEPRLREEAEREEVVDRLLKYGMQVEGLLRSAGTHAAGVVIADRPTD 526

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD--- 597
            +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G  +    
Sbjct: 527  ELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLILKSGRPIHVAA 586

Query: 598  ---------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
                           ++LIP DD +TY L  +  T+ +FQ+ES+GM  AL+ M+P CIED
Sbjct: 587  DGSQLYEPAEGGENQMNLIPLDDDKTYKLYASAKTVAVFQVESTGMMDALKRMKPTCIED 646

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            I+ALV+LYRPGP++NI VY   KNG+ +I S+HP ID +L ETQG+I+YQEQVMQIAQ +
Sbjct: 647  IVALVALYRPGPMENIPVYCEVKNGQREITSVHPSIDHILAETQGIIVYQEQVMQIAQEM 706

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +GYSL  AD+LRRAMGKKIKE MD ++ +F SGA+KNG+ K  A  +F+LL KFA+YGFN
Sbjct: 707  AGYSLGGADLLRRAMGKKIKEAMDAERPKFESGAAKNGVEKKKATEVFDLLEKFANYGFN 766

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821
            KSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   EK+  +  + ++   +  +PP V
Sbjct: 767  KSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTEKLAVYFYETKKGLKLDYIPPCV 826

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA---------DKPFDSLEDFCSRV 872
            N     F V D ++ Y+L A+K VG    R ++E            DKPF ++ DF  RV
Sbjct: 827  NRSQASFDVEDGKLVYALGALKNVGLDAMRLVVEGRRSVPEDPRSPDKPFVNVYDFARRV 886

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D K++ +R LE +  AG  D    +R ++ +SLD +  Y+  + + + +   ++F  E G
Sbjct: 887  DLKRVGKRPLEMMARAGCFDQLDRNRRRIFESLDALVAYSAAIHEQKASAQVSLFG-EAG 945

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                +  L        + R   E + +GFY SGHPLD Y P L++  +   +E     RG
Sbjct: 946  DDLPEPRLSPAPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRRDVLTLDEVEDKARG 1005

Query: 993  NN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 ++  +V  +Q++K+ KG+R  +   S+P+  YE   F
Sbjct: 1006 GACIAKMGGVVAGRQERKSAKGNRFAFAQLSDPSGAYEVTIF 1047


>gi|113955565|ref|YP_730835.1| DNA polymerase III subunit alpha [Synechococcus sp. CC9311]
 gi|113882916|gb|ABI47874.1| DNA polymerase III, alpha subunit [Synechococcus sp. CC9311]
          Length = 1174

 Score = 1061 bits (2745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1056 (37%), Positives = 586/1056 (55%), Gaps = 44/1056 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +    AGI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPQMVGRAKELGMPALALTDHGVMYGAVELLKLCKGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          + +  +     +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPKKERRY----HLVVLAKNATGYRNLVKLTSISHLRGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 +    L++ G EGLI+ T    G I +A   +   VA    L +++ FGD  Y+ 
Sbjct: 118  FSRACVDKQLLKQYG-EGLIVATACLGGEIPQAIMRDRPDVARDVALWYQQTFGDDFYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V++A    +PL+ATN++ +L+  D EAHD L+ V    ++S   
Sbjct: 177  IQDHGSPEDRIVNVEIVRIAKELGIPLIATNDAHYLTRNDVEAHDALLCVLTGKLISDVK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   YLK+  EM  +F D        EA+ NTV++A +      +    +PRF   
Sbjct: 237  RLRYTGTEYLKSEEEMSRLFVDHLEPDVVAEAISNTVQVADKVEDYDILGRYQMPRFPIP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E         + LR     GL  RL     ++     +Y  RL  EL ++ +M F  YFL
Sbjct: 297  EP----HTPVSYLREVTEQGLRNRLE--IDSETAIDPNYGDRLSHELKIMEQMGFPTYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A++  IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 351  VVWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KL
Sbjct: 411  DTDFCIERRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKL 470

Query: 479  IPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L A+  +      FRE    DP V R ++++ ++EG  +    HAAG+VI
Sbjct: 471  IPVVRGKPAKLAAMIGEESPNPEFREKYKKDPVVKRWVDMAMRIEGTNKTYGVHAAGVVI 530

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               PL +LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +A    
Sbjct: 531  AADPLDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVAATIG 589

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             KVD   +P +D ETY LL      GIFQLES+GMRQ +  ++P  +EDI ++++LYRPG
Sbjct: 590  EKVDPDKLPLEDPETYALLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYRPG 649

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRK+G+E I   H  I+P+L+ET G+++YQEQ+M+IAQ ++GYSL EAD
Sbjct: 650  PLDAGLIPKFINRKHGRETIDFAHHSIEPILQETYGIMVYQEQIMKIAQDMAGYSLGEAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM K +  F+ GAS  G+ K +A  +F+ +  FA+Y FNKSH+ AY  
Sbjct: 710  LLRRAMGKKKVSEMQKHRGIFVQGASDRGVDKKVADELFDQMVLFAEYCFNKSHSTAYGA 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K HYPV ++AA +T+     +K++++  +     I++MPP +N   +DF   
Sbjct: 770  VTYQTAYLKAHYPVAYMAALLTVNAGASDKVQRYISNCNAMGIEVMPPDINASGIDFTPK 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             +RI + L+A++ +G    R ++ +   +  F SL D C R+ S  LNRR +ESL+  GA
Sbjct: 830  GDRILFGLSAVRNLGDGAIRAVIGSRESEGAFQSLADLCDRLPSAVLNRRSMESLIHCGA 889

Query: 891  LDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----------K 937
            +D      +R QL+  LD +  +A    K+R +   N+F       SD            
Sbjct: 890  MDALEPEANRAQLMADLDLLLDWATSRAKDRASGQGNLFDLMAAASSDGAEDAGTDLSLA 949

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
                     + + +   E+ ++GFY S HPL    P  + +   G            +  
Sbjct: 950  PKAPPVKDYHPTEKLRLEKDLVGFYLSDHPLKQLTPPAKLLAPIGLGSLEEQADKAKVSA 1009

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             AMV   +Q  TRKG R+  +T  +     EA  FP
Sbjct: 1010 IAMVSEMRQVTTRKGDRMAVLTLEDLTGSCEAVVFP 1045


>gi|87124235|ref|ZP_01080084.1| DNA polymerase III, alpha subunit [Synechococcus sp. RS9917]
 gi|86167807|gb|EAQ69065.1| DNA polymerase III, alpha subunit [Synechococcus sp. RS9917]
          Length = 1173

 Score = 1061 bits (2745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1054 (37%), Positives = 592/1054 (56%), Gaps = 41/1054 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++      PA+A+TD   ++ A+E  +   AAGI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPQMVERCKELGMPALALTDHGVMYGAIELLKLCKAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ +          + +  +     +V+L   A GY+ L++L S  +L     + +
Sbjct: 62   IIGNEMYVINGSIEDPQQKKERRY----HLVVLAKNATGYRNLVKLTSLSHLRGMRGKGI 117

Query: 130  --RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              R C+   L +  +EGLI+ T    G I +A       VA      ++++FGD  Y+ +
Sbjct: 118  FSRACIDKHLLKQYSEGLIIATACLGGEIPQAILRGRPDVARDVARWYQEVFGDDFYLEI 177

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    DR    ++V++A    + L+ATN++ +L+  D EAHD L+ V    ++S + R
Sbjct: 178  QDHGSPEDRIVNVEIVRIAKELGIGLIATNDAHYLTRHDVEAHDALLCVLTGKLISDEKR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             R T   Y+++  EM  +F+D        EA+  T  +A +      +    +PRF   E
Sbjct: 238  LRYTGTEYIRSEEEMGRLFADHLAPEVVQEAITTTALVADKVEDYDILGRYQMPRFPIPE 297

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                     + LR  +  GL  RL  G  A       Y +RL +EL ++ +M F  YFL+
Sbjct: 298  G----HTPVSYLREVSECGLRERLELG--ADEVIDPTYGERLTYELGIMEQMGFPTYFLV 351

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D+I++A+   IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D
Sbjct: 352  VWDYIRFARDQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDID 411

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
             DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KLI
Sbjct: 412  TDFCIERRGEVIDYVTRRYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLI 471

Query: 480  PNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            P     P  L+A+  +      FR+    DP V R ++++ ++EG  +    HAAG+VI 
Sbjct: 472  PVVRGKPAKLKAMIGEESPNPEFRDKYDKDPVVKRWVDMAMRIEGTNKTFGVHAAGVVIA 531

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
              PL +LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +    G 
Sbjct: 532  ADPLDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVETSLGE 590

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            ++D   +P  D +T+ LL      GIFQLES+GMRQ +  ++P  +EDI ++++LYRPGP
Sbjct: 591  RIDPDKLPAKDPDTFALLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYRPGP 650

Query: 655  IDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +D   I  + NRK+G+E I   H  + P+L+ET G+++YQEQ+M+IAQ L+GYSL EAD+
Sbjct: 651  LDAGLIPKFINRKHGREAIDFAHQSLQPILQETYGIMVYQEQIMKIAQDLAGYSLGEADL 710

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK   EM K +  F+ GAS+ G+   +A  +F+ +  FA+Y FNKSH+ AY  +
Sbjct: 711  LRRAMGKKKVAEMQKHRSIFVKGASERGVDDKVADELFDQMVLFAEYCFNKSHSTAYGAV 770

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTA++K HYPV ++AA +T+     +K++++  +     I++MPP VN    DF    
Sbjct: 771  TYQTAYLKAHYPVAYMAALLTVNAGASDKVQRYIANCNAMGIEVMPPDVNASGTDFTPTG 830

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +RI + L+A++ +G    R ++ +  AD PF SL D C R+ S  LNRR LESL+  GA+
Sbjct: 831  DRILFGLSAVRNLGDGAIRQLIASREADGPFQSLADLCDRLPSSVLNRRSLESLIHCGAM 890

Query: 892  DCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITL--- 940
            D      +R QL+  LD +  +A    K+R +   N+F      A   G+    ++L   
Sbjct: 891  DALAPEANRAQLIADLDLLLDWASSRAKDRDSGQGNLFDLMASAADSAGSGPADLSLAPK 950

Query: 941  -EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
                   + S +   E+ ++GFY S HPL   KP  R +   G            +   A
Sbjct: 951  AAPVPDYHPSEKLRLEKELVGFYLSDHPLKQLKPPARLLAPIGLASLQEQADKAKVSAIA 1010

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            MV   +Q  TRKG R+  +   +     EA  FP
Sbjct: 1011 MVSELRQVTTRKGDRMAVLQLEDLTGSCEAVVFP 1044


>gi|163740552|ref|ZP_02147946.1| DNA polymerase III subunit alpha [Phaeobacter gallaeciensis 2.10]
 gi|161386410|gb|EDQ10785.1| DNA polymerase III subunit alpha [Phaeobacter gallaeciensis 2.10]
          Length = 1170

 Score = 1061 bits (2745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 502/1061 (47%), Positives = 683/1061 (64%), Gaps = 51/1061 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+ H+ YSLLEGAL L  + D     + PAIA+TD+NNLF+ALEFS  A  
Sbjct: 1    MTNAPRFIHLRTHTEYSLLEGALRLKKLPDLCKKHEMPAIAVTDSNNLFAALEFSVAASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+           G+ P P  P +VLL  +  GY+ L++L S +Y+ + 
Sbjct: 61   AGVQPIMGCQVDL----RFTEPTPGERPKPPAP-LVLLAQSETGYEHLMKLNSCLYMRE- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G +   + L  L    +E +I L+GG  GP+ R         AE  +   K +F DRLYV
Sbjct: 115  GSELAHVTLEELA-AHSEDVICLSGGPDGPVGRLLQMGQRPAAEALMQRLKAMFPDRLYV 173

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       ++  E   V++AY  +LPLVATN+  F + E YEAHD ++ +A   
Sbjct: 174  ELQRHPGEHGQPDAEQATERGHVEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K++ EMV++F+DLPEA+ENTVEIA+RC+F+     PILP+F +
Sbjct: 234  YVDQAEPRRRLTAQHYFKSQEEMVALFADLPEAIENTVEIAKRCAFMAYRRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E          ELR  A  GL+ RLA   I      +DY++RLDFEL +I  M F GYF
Sbjct: 294  DEV--------AELRRIANEGLQQRLA--VIPHAVSVEDYQERLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S+  ++ ++ R RE    +  VDRLL+   ++EGL R A THAAG+VIGD
Sbjct: 464  LIPVEGVKPMSIVDSLREEPRLREEAENEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----- 591
            RPL  LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q     
Sbjct: 524  RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDL 583

Query: 592  -------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                          G +  ++ IP DD  TY L +   T+ +FQ+ES+GM  AL+ M+P 
Sbjct: 584  HAAADGTQLYDPPEGAENQINAIPLDDTVTYDLYSRAKTVAVFQVESTGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG  KI S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPVYCEVKNGLRKIQSVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++ Y+L  AD+LRRAMGKKIKE MD ++ +F  GA++NG+    A  +F+LL KFA+
Sbjct: 704  AQVMANYTLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVPAKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   +K+  + ++ ++  ++  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLSLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA----DKPFDSLEDFCSRVD 873
            PP VN     F V    + Y+L A+K VG    R +  A      DKPF +L DF  RVD
Sbjct: 824  PPCVNRSEATFNVVKGELVYALGALKNVGVEAMRLVTAARRESGQDKPFATLFDFARRVD 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             KK+ +R LE L  AG  D    +R ++  SL  +  Y+  V   R +   ++F  E G 
Sbjct: 884  LKKVGKRPLEMLARAGGFDQLDPNRRRVFDSLGALVDYSSAVHDQRNSSQVSLFG-EAGE 942

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
               +  L        + R   E + +GFY SGHPLD Y P L++  +   +E  A     
Sbjct: 943  DLPEPRLPGTPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVTAKAERG 1002

Query: 994  N--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++A +V  +Q++K+ +G+R  +   S+ +  YE   F
Sbjct: 1003 PFMAKMAGVVAGRQERKSARGNRFAFAQLSDTSGGYEVTLF 1043


>gi|239626635|ref|ZP_04669666.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516781|gb|EEQ56647.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1161

 Score = 1061 bits (2745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1048 (36%), Positives = 573/1048 (54%), Gaps = 41/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +  +  +       ++A+TD   ++  ++F + A  AGI+P
Sbjct: 2    AFTHLHVHTEYSLLDGSCKIKELTARAKELGMDSMAVTDHGVMYGVIDFYKAAKEAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +          +  +       +VLL    +GY+ L+++VS+ ++ D      
Sbjct: 62   ILGCEVYVAPNSRFDR--ETVSGEDRYYHLVLLAENNQGYENLMKIVSKGFV-DGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L +   +G+I L+   +G + R       + A +    +  +F  D  ++ LQ 
Sbjct: 119  RVDYEVLAKYH-QGVIALSACLAGEVQRYLTRGMYEEAVRAAGRYVDIFGKDNFFLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+      +++++    L LVATN+  +   ED +AHD+L+ +     V  +DR R
Sbjct: 178  HGLPDQKLVNQGLMRMSRETGLELVATNDIHYTFAEDEKAHDILLCIQTGKKVEDEDRMR 237

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y K+  EM ++F   P+ALENT +IA RC+  ++     LPR+   E  D    
Sbjct: 238  YEGGQYYCKSEEEMKALFPYAPQALENTHKIAGRCNVEIEFGVTKLPRYEVPEGFD---- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L +    G + R  +              RLD+EL+ I  M +  YFLIV DFI +
Sbjct: 294  SWSYLNHLCREGFKTRYPEDDGT-------LSSRLDYELDTIRTMGYVDYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I VGPGRGS AGSV +Y L IT+IDP+R++LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 347  ARSQGIMVGPGRGSAAGSVVSYTLGITNIDPVRYNLLFERFLNPERVSMPDIDIDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG ++V QI+TFG+L AK  +RDVGR L +PYS  D + K+IPND    
Sbjct: 407  RQEVIDYVVRKYGKDQVVQIVTFGTLAAKGVVRDVGRVLGLPYSMCDTIAKMIPNDLGMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   ++A   D  V  L+++S++LEGL RH S HAAG+VIG R + + VP+ 
Sbjct: 467  LD-KALVMNPDLKKAYNEDQQVRNLIDMSKRLEGLPRHTSMHAAGVVIGSRSIDEFVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            R        TQF M  IE+ GL+K DFLGL+TLT++Q ++    +   + +D+  I FDD
Sbjct: 526  RAS-DGTITTQFTMTTIEELGLLKMDFLGLRTLTVIQNAVRLAEKDYGISIDVDHIDFDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +    + T  T G+FQLES+GM+  ++ ++ + +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 585  KQVLESIGTGRTEGVFQLESAGMKSFMKELKAENLEDIIAGISLYRPGPMDFIPRYLKGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N KE I    P ++ +L  T G I+YQEQVMQI + L+GY++  +D++RRAM KK    M
Sbjct: 645  NDKESITYECPQLEHILSPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSKKKTSVM 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K++  F+         G  KNGI +  A +I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 705  EKERHNFVYGNEEEGVKGCVKNGIDEKTANHIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            ++K +YP EF+AA MT  MDNV K  ++     R   I ++PP +N     F V    I 
Sbjct: 765  YLKYYYPREFMAALMTSVMDNVGKFSEYILTCRRMMGIPVLPPDINEGESGFSVSGEAIR 824

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y L+AIK VG      I+       PF S+EDF  R+  K++N+R LE+ + +GALD   
Sbjct: 825  YGLSAIKSVGKPVVDVILAERGKGGPFRSMEDFVGRMSMKEVNKRTLENFIKSGALDTLP 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFE 953
             +R Q +     + +      K+      ++F  A E+     +IT       +      
Sbjct: 885  GTRRQKMAVAPTMLEEKARERKSMFEGQLSLFDIAGEEARNEFQITFPDVGEYSKEELLA 944

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQ 1005
             E+ +LG Y SGHPLD Y+   R+       + +            G+ + +  MV  K 
Sbjct: 945  FEKEILGVYISGHPLDDYEEAWRRNITATSADFMVDEETEKAGVQDGSRVVIGGMVAGKT 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K TR    + ++T  +     E   FP
Sbjct: 1005 VKTTRTNQLMAFITLEDLMGSVEVIVFP 1032


>gi|163737024|ref|ZP_02144442.1| DNA polymerase III, alpha subunit [Phaeobacter gallaeciensis BS107]
 gi|161389628|gb|EDQ13979.1| DNA polymerase III, alpha subunit [Phaeobacter gallaeciensis BS107]
          Length = 1170

 Score = 1061 bits (2745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 502/1061 (47%), Positives = 683/1061 (64%), Gaps = 51/1061 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+ H+ YSLLEGAL L  + D     + PAIA+TD+NNLF+ALEFS  A  
Sbjct: 1    MTNAPRFIHLRTHTEYSLLEGALRLKKLPDLCKKHEMPAIAVTDSNNLFAALEFSVAASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+           G+ P P  P +VLL  +  GY+ L++L S +Y+ + 
Sbjct: 61   AGVQPIMGCQVDL----RFTEPTPGERPKPPAP-LVLLAQSETGYEHLMKLNSCLYMRE- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G +   + L  L    +E +I L+GG  GP+ R         AE  +   K +F DRLYV
Sbjct: 115  GSELAHVTLEELA-AHSEDVICLSGGPDGPVGRLLQMGQRPAAEALMQRLKAMFPDRLYV 173

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       ++  E   V++AY  +LPLVATN+  F + E YEAHD ++ +A   
Sbjct: 174  ELQRHPGEHGQPEAEQATERGHVEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K++ EMV++F+DLPEA+ENTVEIA+RC+F+     PILP+F +
Sbjct: 234  YVDQAEPRRRLTAQHYFKSQEEMVALFADLPEAIENTVEIAKRCAFMAYRRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E          ELR  A  GL+ RLA   I      +DY++RLDFEL +I  M F GYF
Sbjct: 294  DEV--------AELRRIANEGLQQRLA--VIPHAVSVEDYQERLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S+  ++ ++ R RE    +  VDRLL+   ++EGL R A THAAG+VIGD
Sbjct: 464  LIPVEGVKPMSIVDSLREEPRLREEAENEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----- 591
            RPL  LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q     
Sbjct: 524  RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDL 583

Query: 592  -------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                          G +  ++ IP DD  TY L +   T+ +FQ+ES+GM  AL+ M+P 
Sbjct: 584  HVAADGTQLYDPPEGAENQINAIPLDDTVTYDLYSRAKTVAVFQVESTGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG  KI S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPVYCEVKNGLRKIQSVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++ Y+L  AD+LRRAMGKKIKE MD ++ +F  GA++NG+    A  +F+LL KFA+
Sbjct: 704  AQVMANYTLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVPAKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   +K+  + ++ ++  ++  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLSLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS----ADKPFDSLEDFCSRVD 873
            PP VN     F V    + Y+L A+K VG    R +  A      DKPF +L DF  RVD
Sbjct: 824  PPCVNRSEATFNVVKGELVYALGALKNVGVEAMRLVTAARRESGEDKPFATLFDFARRVD 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             KK+ +R LE L  AG  D    +R ++  SL  +  Y+  V   R +   ++F  E G 
Sbjct: 884  LKKVGKRPLEMLARAGGFDQLDPNRRRVFDSLGALVDYSSAVHDQRNSSQVSLFG-EAGE 942

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
               +  L        + R   E + +GFY SGHPLD Y P L++  +   +E  A     
Sbjct: 943  DLPEPRLPGTPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVTAKAERG 1002

Query: 994  N--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++A +V  +Q++K+ +G+R  +   S+ +  YE   F
Sbjct: 1003 PFMAKMAGVVAGRQERKSARGNRFAFAQLSDTSGGYEVTLF 1043


>gi|296184692|ref|ZP_06853103.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|296050474|gb|EFG89897.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
          Length = 1183

 Score = 1061 bits (2745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1074 (36%), Positives = 602/1074 (56%), Gaps = 58/1074 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            EK+  +V L  H+ YSLL+ +  +  ++ K       +IAITD   ++  ++F ++A   
Sbjct: 3    EKTYDWVSLHQHTGYSLLDSSAKIPELISKAKELGMKSIAITDHGVMYGCVDFYKEAKEQ 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIGC++ +  +      N  +        +VLLV    GY+ L+++VS+  +    
Sbjct: 63   GIKPIIGCEVYVAGKSMHIKQNDKEN---ENYHLVLLVKNETGYKNLMKIVSKASVEG-F 118

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R    +L++  +EGLI L+    G I       +   A++  L +K +F D  Y+ 
Sbjct: 119  YYKPRTDHDYLKK-HSEGLISLSACLGGEIQSYILKGNLSKAKEIALLYKDIFKDGFYLE 177

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H   ++ +   ++++++   ++PLVATN+  ++ +EDY+AHDVL+ +    VV++++
Sbjct: 178  LQYHGMEEQEKVNEELIKMSKELDIPLVATNDVHYIKKEDYKAHDVLLCIQTGKVVNEEN 237

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R   D  YLK+  EM  IFS +PEALENTV+IA +C+F  + H   LP+F   E    
Sbjct: 238  RMRYPSDEFYLKSPEEMYKIFSRVPEALENTVKIAEQCNFDYEFHKSKLPKFPLPE---- 293

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGY---------------HAQDYRQRLDFELNVI 348
              E    LR+    GL  R  +    K                  A+   +RL++EL++I
Sbjct: 294  HVEPYEYLRDLCYKGLIQRYKEFEQLKEVSFSIESVNELADSNDEAKKLVERLEYELSII 353

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M +  YFLIV DFI ++ +N I  GPGRGS AGS+ AY L IT IDP+++SLLFERFL
Sbjct: 354  KQMGYVDYFLIVWDFINFSVENGIMTGPGRGSAAGSIIAYTLGITKIDPIKYSLLFERFL 413

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D DFC +RR EVI YV  KYG   V+QIITFG++ A+A +RDVGRA+  P
Sbjct: 414  NPERVSMPDIDSDFCYERRGEVIDYVVRKYGENSVSQIITFGTMAARACIRDVGRAMNYP 473

Query: 469  YSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
            Y++VDR+ K+IP  P   +++ +A+  +S   EA   +     L++I++ LEGL RH ST
Sbjct: 474  YAEVDRIAKMIPAAPGKAITIDKALELNSELEEAYENEERTKALIDIARALEGLPRHTST 533

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HAAG+VI  +PL   VPM +    D  VTQF M  +E+ GL+K DFLGL+TLT+L+ ++ 
Sbjct: 534  HAAGVVIASQPLVNYVPMQK--NEDNIVTQFTMGTLEELGLLKMDFLGLRTLTVLRDAVS 591

Query: 588  FLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             +   +G+ +DL  I +DD   Y ++    T+GIFQLES+GM   ++ ++PD +EDIIA 
Sbjct: 592  MVKDNKGINIDLDKIDYDDKNVYKMIGEGKTVGIFQLESAGMTSFMKELRPDSLEDIIAG 651

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            +SLYRPGP+  I  Y + KN  E I  + P ++ +L  T G ++YQEQVM+I + L+GYS
Sbjct: 652  ISLYRPGPMAEIPKYISNKNNPEGIEYLTPELESILGVTYGCMVYQEQVMEIVRKLAGYS 711

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLA 754
            +  +D++RRAM KK    M++++  FI             G  KNGIS+  A  IF+ + 
Sbjct: 712  MGRSDLVRRAMSKKKHHVMEEERHNFIYGIVDEEGVEKVPGCIKNGISEDAADKIFDSMM 771

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNKSHAA+YAV+++QTA+M  +YP E++AA +     + EK+  + + A +  I
Sbjct: 772  DFASYAFNKSHAASYAVVAFQTAYMIHYYPTEYIAAMLNSVKGDNEKVAYYTRFADEIGI 831

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            Q++ P++N     F V +++I + L+AIK VG      I+++      F +L DFC+++D
Sbjct: 832  QVLTPNINESYAKFTVKEDKIRFGLSAIKNVGENVIDSIVKSRERKGVFSNLVDFCNKID 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
               +N+RV+ESL+ AGA DCF   R +LL   + +        K   +   ++F   K  
Sbjct: 892  VSCINKRVVESLIKAGAFDCFKVYRSKLLAVYEKVLDGVSNSRKKNIDGQLSLFTDFK-K 950

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA----- 988
               KI   +            E+ + G Y SGHPL+ Y+  L         + +      
Sbjct: 951  IEVKIEYPEIKEFEKRHILAMEKEMTGLYLSGHPLEEYEKSLSLQTSAKISDIIGDESLE 1010

Query: 989  ---------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                        G+ + +  ++ S  +K TR    + ++   +     E   FP
Sbjct: 1011 DGTVGQQSKLKDGDKVIIGGIINSVTKKVTRNNDMMAFIKLEDLYGVIEIIIFP 1064


>gi|227873299|ref|ZP_03991564.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
 gi|227840866|gb|EEJ51231.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
          Length = 1156

 Score = 1061 bits (2745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1048 (34%), Positives = 581/1048 (55%), Gaps = 42/1048 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VHSSYSLL+G+  +  ++ ++      +IA+TD   ++  ++F ++A   GI P
Sbjct: 2    AFTHLHVHSSYSLLDGSGKIPEMIARVKELGMDSIALTDHGVMYGVIDFYKEAKKQGIHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G ++ +      +   +G         +VLL     GY  L++LVS  +         
Sbjct: 62   ILGSEIYLSRSMEERFIQKGG---ARYYHLVLLAENDIGYHNLMKLVSLGFTEG-YYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+  + L++   EG+I L+   +G + R    +  + A++  L ++ +F     ++ +Q 
Sbjct: 118  RVDYAVLEKYH-EGIIALSACLAGEVSRNLRLSQYEEAKQAALRYEGIFGKGNFFLEMQD 176

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++      +++L     +PLV TN+  +  +ED +AHD+L+ +     +  +DR R
Sbjct: 177  HGYAEQKLVNQGMLRLHEETGIPLVVTNDIHYTYKEDAKAHDILLCLQTGKKLMDEDRMR 236

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +  K+  EM  +F    EALENT +IA+RC   +      LP++   E       
Sbjct: 237  YPGGQFYIKSEEEMEELFPYTKEALENTGKIAKRCQVNITFGEYHLPKYPVPEG----HT 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L    + GLE R        G   Q+ + RL +ELN I+ M F  YFL+V D+I +
Sbjct: 293  AYSYLEELCLKGLEKRY-------GESWQENKDRLYYELNTISDMGFVDYFLVVWDYIHF 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + I VGPGRGS AGS+ AYA+ ITD+DP+   LLFERFLNP+R++MPD D+DF  +R
Sbjct: 346  AKTHGIAVGPGRGSAAGSIVAYAIGITDVDPMEHQLLFERFLNPERVTMPDIDVDFEYER 405

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG E+V+QIITFG+L A+  +RDVGR L +PY++ D+L KL+PN+    
Sbjct: 406  RQEVIDYVGKKYGKEQVSQIITFGTLAARGVIRDVGRVLDIPYAKCDQLAKLVPNELNMT 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A++     +     +    +++++  +LEGL RH+S HAAG+VI   P+S  VP+ 
Sbjct: 466  LE-KALSVSKELKNLYDTEEETRQMIDMCLRLEGLPRHSSMHAAGVVIAGSPVSDYVPLS 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            R        TQF M  IE+ GL+K DFLGL+TLT++Q +L F+ +   VK+DL  +P+DD
Sbjct: 525  RGS-DGSITTQFTMTTIEELGLLKMDFLGLRTLTVIQDALRFIEENHGVKLDLDKLPYDD 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             + Y +L+     G+FQLES+GM   ++ +QP C++DIIA V+LYRPGP+D I  Y   K
Sbjct: 584  AKVYAMLSKGDCAGVFQLESAGMVNFMKRLQPSCLDDIIAGVALYRPGPMDFIPDYIAGK 643

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
                 +      ++ +LK T GVI+YQEQVMQI + L+G+++  +D+LRRAM KK    M
Sbjct: 644  KNPATVHYDCKEMESILKNTYGVIVYQEQVMQIVRDLAGFTMGGSDLLRRAMSKKKTSVM 703

Query: 726  DKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            ++ ++ F+ G +K         GIS+ +A  I++ +  FA Y FNKSHA +YA++SYQTA
Sbjct: 704  EEARQSFVYGNAKEGIAGCISKGISEEVANRIYDKMIDFAKYAFNKSHAVSYALLSYQTA 763

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +Y  EF AA+M+  MDN  K  ++ + AR+  I+I+PP +    V F V + +I Y
Sbjct: 764  YLKYYYAPEFYAATMSSFMDNTVKTAEYIEVAREQGIEILPPDIQLAEVGFSVKEGKIRY 823

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L+A+KGVG + A  I+    + PF + ED   R+  + +NRR +ES + AGA D    +
Sbjct: 824  GLSAVKGVGRSAAEQIILERKNGPFRNFEDLVQRLSQRGINRRAMESFIHAGAFDNLEGN 883

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH----EKGTFSDKITLEKFSVENSSVRFE 953
            R + L  L  + +  Q  +K++     ++        +     ++          +    
Sbjct: 884  RREKLVMLPEVLEDLQKGKKDQIAGQMSLLDLLGEEAEERQEFELIFPDLEEFPKAELLR 943

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKG--------YEESVATIRGNNIRLAAMVVSKQ 1005
            NE+  LG Y SGHPLD  + +L+++  +          EE    +   +  +  M+    
Sbjct: 944  NEKDALGVYLSGHPLDSDRALLKQLCSRRARDFSLEAIEEEKNLVDDEHCTVGGMITGIN 1003

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++ T+K   + +VT  +     E   FP
Sbjct: 1004 RRITKKNDMMAFVTLEDNTGSMEVVVFP 1031


>gi|148360386|ref|YP_001251593.1| DNA polymerase III subunit alpha [Legionella pneumophila str. Corby]
 gi|148282159|gb|ABQ56247.1| DNA polymerase III, alpha subunit [Legionella pneumophila str. Corby]
          Length = 1148

 Score = 1061 bits (2743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1039 (40%), Positives = 622/1039 (59%), Gaps = 35/1039 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VH+ +SL++G + +  ++  + A     +A+TD  NLF+A++  + A  AGI+P
Sbjct: 4    RFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L                    + S+VLL     GY+ L  LVS+ Y   Q     
Sbjct: 64   IIGSDLPCH----------DLETPDNIFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHGQP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+ L W+ E  + GLI L+GG  G I +A   N   +A KR L +  LF +R Y+ +QR 
Sbjct: 114  RVQLQWIPEF-SRGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRT 172

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
               D      +++ LA   +LPLVATN+  F+ E+D++AH+  + +     ++   R   
Sbjct: 173  GRADELHYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRVQH 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YL++  EM  +FSDLP AL+NTVEI++RC+  L++    LP F   +   +    
Sbjct: 233  YSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDGTTV---- 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYH-----AQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            E  L + +  GLE RL Q    K          +Y +RL  EL+VI  M F+GYFLIVAD
Sbjct: 289  EAYLSHLSEVGLEERLKQLFRDKSEGELLAARGEYDKRLKIELDVINNMGFAGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI YV  KYG + V+QIITFG++ AKA +RDVGR L  PY  VD+L KLIP +
Sbjct: 409  CMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +S +A+  +   R     +  V  L +++ KLEG+ R+A  HA G+VI    L+  
Sbjct: 469  LGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAPSQLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
              +Y +  S   V+QF+   +E  GL+KFDFLGL+TLT++  +L  + ++        +D
Sbjct: 528  TAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPID 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +S IP  D  T+ LL    T  +FQLES GM++ +  +QPDC EDIIALV+L+RPGP+ +
Sbjct: 588  ISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  + +RK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L  AD+LRR
Sbjct: 648  GMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRR 707

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ+E F  GA   G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++YQ
Sbjct: 708  AMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQ 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TAW+K HYP  F+AA M+ +MDN +K+  F  +     +Q++PPS+N     F V D + 
Sbjct: 768  TAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFTVSDEKT 827

Query: 836  -YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
              Y L AIKGVG +    I++    + PF  L  FC R+D +K+NRRV+E+L+ +GA D 
Sbjct: 828  IIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDV 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            +   R  L  SL+   K A+   +N+++   ++F+  +   +D+    +    + + R E
Sbjct: 888  WKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDK-ADEQNYVESKSWSEAQRLE 946

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ VLGFY +GHP D Y+  L    I    +   ++    I + A VV+ ++  T++G 
Sbjct: 947  GEREVLGFYLTGHPADQYRRELGDF-IVPVSQLNPSLHKKAI-ICAQVVAIRKIITKRGK 1004

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            ++  +   +     +A  F
Sbjct: 1005 KLVIIGMDDATARIDAVVF 1023


>gi|307609756|emb|CBW99268.1| DNA polymerase III, alpha chain [Legionella pneumophila 130b]
          Length = 1148

 Score = 1061 bits (2743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1039 (40%), Positives = 624/1039 (60%), Gaps = 35/1039 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VH+ +SL++G + +  ++  + A     +A+TD  NLF+A++  + A  AGI+P
Sbjct: 4    RFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L                    + S+VLL     GY+ L  LVS+ Y   Q     
Sbjct: 64   IIGSDLPCH----------DLETPDNIFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHGQP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+ L W+ E  ++GLI L+GG  G I +A   N   +A KR L +  LF +R Y+ +QR 
Sbjct: 114  RVQLQWIPEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRT 172

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
               D      +++ LA   +LPLVATN+  F+ E+D++AH+  + +     ++   R  +
Sbjct: 173  GRADELHYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRVQQ 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YL++  EM  +FSDLP AL+NTVEI++RC+  L++    LP F   +   +    
Sbjct: 233  YSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDGTTV---- 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYH-----AQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            E  L + +  GLE RL Q    K          +Y +RL  EL+VI  M F+GYFLIVAD
Sbjct: 289  EAYLSHLSEIGLEERLKQLFRDKSEGELLAARGEYDKRLKIELDVINNMGFAGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI YV  KYG + V+QIITFG++ AKA +RDVGR L  PY  VD+L KLIP +
Sbjct: 409  CMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +S +A+  +   R     +  V  L +++ KLEG+ R+A  HA G+VI    L+  
Sbjct: 469  LGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAPSQLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
              +Y +  S   V+QF+   +E  GL+KFDFLGL+TLT++  +L  + ++        +D
Sbjct: 528  TAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPID 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +S IP  D  T+ LL    T  +FQLES GM++ +  +QPDC EDIIALV+L+RPGP+ +
Sbjct: 588  ISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  + +RK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L  AD+LRR
Sbjct: 648  GMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRR 707

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ+E F  GA   G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++YQ
Sbjct: 708  AMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQ 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TAW+K HYP  F+AA M+ +MDN +K+  F  +     +Q++PPS+N     F V D + 
Sbjct: 768  TAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFTVSDEKT 827

Query: 836  -YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
              Y L AIKGVG +    I++    + PF  L  FC R+D +K+NRRV+E+L+ +GA D 
Sbjct: 828  IIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDV 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            +   R  L  SL+   K A+   +N+++   ++F+  +   +D+    +    + + R E
Sbjct: 888  WKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDK-ADEQNYVESKSWSEAQRLE 946

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ VLGFY +GHP D Y+  L    I    +   ++    I + A VV+ ++  T++G 
Sbjct: 947  GEREVLGFYLTGHPADQYRRELGDF-IVPVGQLNPSLHKKAI-ICAQVVAIRKIITKRGK 1004

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            ++  +   +     +A  F
Sbjct: 1005 KLVIIGMDDATARIDAVVF 1023


>gi|307546379|ref|YP_003898858.1| DNA polymerase III subunit alpha [Halomonas elongata DSM 2581]
 gi|307218403|emb|CBV43673.1| DNA polymerase III, alpha subunit [Halomonas elongata DSM 2581]
          Length = 1169

 Score = 1061 bits (2743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1056 (39%), Positives = 608/1056 (57%), Gaps = 49/1056 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  FVHL+VHS +SL++G + L  ++        PA+A+TD  NLF+ +++   A  AG+
Sbjct: 2    TTPFVHLRVHSEFSLVDGLIRLKPLIKAAVEQGTPALALTDEANLFALVKYYTGAQGAGL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +P+I          +L + N      P    + LL   A GY+ L EL+SR ++  Q + 
Sbjct: 62   KPLI--------GSDLWLANPHDEEHP--YRLTLLAMDATGYRNLTELISRGWVEGQRQG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +  SW+    +EGLI L+GG  G I R    +    A   L  +   F  R Y+ L 
Sbjct: 112  RALLERSWVMAQ-SEGLIALSGGREGDIGRHLLSDHHAEARALLDEWNAAFPGRYYLELT 170

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            R  R  +       V LA   + P+VATN+  FL  ED+ AH+  +A+     +    R 
Sbjct: 171  RTGRALEEECVHLSVDLAVETQTPVVATNDVRFLEREDFWAHETRVAIGEGKALDDPRRE 230

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               T + YLK   EM  +FSD+PEALEN+V IA RC+  +++    LP +   E      
Sbjct: 231  RHYTEEQYLKTPEEMAELFSDIPEALENSVMIAARCNVDVRLGEIFLPEYGIPEGM---- 286

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQ---------DYRQRLDFELNVIARMKFSGY 356
             +E   R  +  GL  RL     A+ Y             YR+RLDFEL++I +M F GY
Sbjct: 287  TQEEFFRKISHDGLTERLDFLYPAERYPRDGAEYAEIDARYRKRLDFELDIILQMGFPGY 346

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV DFIQWAK N++PVGPGRGSGAGS+ AYA  ITD+DPL + LLFERFLNP+R+SMP
Sbjct: 347  FLIVMDFIQWAKDNDVPVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMP 406

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFC ++RD VI YV  +YG   V+QI+TFG++ AKA +RDV RA   PYS  D+L 
Sbjct: 407  DFDVDFCMEKRDRVIEYVAERYGRNAVSQIVTFGTMAAKAVVRDVARAQGKPYSLGDKLS 466

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP +    +  +AI D+ + +E   AD     + E++ KLEG+ R    HA G+VI  
Sbjct: 467  KLIPFEVGMTLG-KAIEDEPQLKEFLEADEEAQEIWEMALKLEGITRGTGKHAGGVVIAP 525

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQ 591
              L+   P+  D        Q++   IE AGL+KFDFLGL+TLT++  +++ +     A+
Sbjct: 526  TKLTDFSPLLCDEDGSGLRVQYDKNDIEDAGLVKFDFLGLRTLTIIDWAVEMVDKVRAAR 585

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +++  IP DD  T+ +L    T  +FQLES GM++ ++ + PD +ED+IALV+L+R
Sbjct: 586  GEEPLNIDAIPLDDVPTFDMLKKAETTAVFQLESRGMKELIKRLLPDSLEDMIALVALFR 645

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PGP+ + +V  + NRK+G+ +I   HP     L+ P+L+ T G+I+YQEQVMQIAQ+++G
Sbjct: 646  PGPLQSGMVDDFINRKHGRAEISYPHPDYQHELLKPVLEPTYGIILYQEQVMQIAQVMAG 705

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YSL +AD+LRRAMGKK  EEM KQ+  F+ G ++NGI K +A NIF+L+ KFA YGFNKS
Sbjct: 706  YSLGQADMLRRAMGKKKPEEMAKQRAGFMEGCAENGIDKDLAGNIFDLVEKFAGYGFNKS 765

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQTAW+K HYP  F+AA ++ EMDN++K+    ++ R   + + PP+VN  
Sbjct: 766  HSAAYALVSYQTAWLKAHYPGPFMAAVLSTEMDNLDKVVPLIEECRSLGLTVTPPNVNVG 825

Query: 825  CVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882
               F V  + R+ Y L AI+GVG      I+EA  A+  F  L DFC RVD +++N+R L
Sbjct: 826  GYKFTVDAEGRVIYGLGAIRGVGEGPIGAIVEAREAEGDFRDLFDFCRRVDPQRMNKRTL 885

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------D 936
            E+L+ AGALD  G SR  L  SLD+  K A   + N+     ++F               
Sbjct: 886  EALIRAGALDNLGPSRAVLAASLDDALKAAAQSQTNQNLGMMDMFGEAFANEPDDDAADA 945

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
                 +    +   R   E+  LG Y +GHP+D Y+  L +       +   +      R
Sbjct: 946  YADYRRVRDWSDKERLAGEKDTLGLYLTGHPIDEYEHELSRFVSTRIVDLKPSREPQ--R 1003

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +A +VV  +  K+++G  + +VT  +     EA+ F
Sbjct: 1004 VAGLVVGVRTMKSKRGDTMAFVTLDDRTGRIEASLF 1039


>gi|313888087|ref|ZP_07821761.1| DNA polymerase III, alpha subunit [Peptoniphilus harei
            ACS-146-V-Sch2b]
 gi|312845777|gb|EFR33164.1| DNA polymerase III, alpha subunit [Peptoniphilus harei
            ACS-146-V-Sch2b]
          Length = 1141

 Score = 1061 bits (2743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1044 (35%), Positives = 597/1044 (57%), Gaps = 45/1044 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +HS YSLL+G+  ++ +  ++      A+A+TD  N++ A+ F +    AG++P
Sbjct: 3    NFVHLHLHSEYSLLDGSTRISLLPQRVKDLGMDAVALTDHGNMYGAIAFYKACKDAGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ I  +D        K        ++LL    EG++ ++++VS  Y+ D      
Sbjct: 63   ILGCEVYISEKDMTVKDRTNKR-----YHLILLAENNEGFKNIMKIVSTGYV-DGYYYKP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L++  ++G+I  +    G + +A      + A+K  L ++ +FG+   ++ LQ 
Sbjct: 117  RVDKEVLKKY-SKGVIATSACLGGEVQKALLNRDKEAAKKAALEYRDIFGEGNFFLELQD 175

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ R   ++V L+   +LPL A+N+  +L +ED ++HDVL+ +     V+  DR +
Sbjct: 176  HGMPEQARVNRELVLLSEELDLPLTASNDVHYLMKEDSKSHDVLLCIQTGKTVNDTDRMK 235

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  YLK+  EM ++F + PEALENTV+IA RC+  ++ H   LP FI  +       
Sbjct: 236  FPSDEFYLKSPDEMAALFPENPEALENTVKIAERCNVEIKFHDLHLPEFIVPDG----YS 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E  L+  A+ G+  R             + ++R +FE N I  M +  YFLIV DFI++
Sbjct: 292  HEEYLKKLALEGMIKRYEN-------VTDEIKERFEFEFNTIKNMGYVDYFLIVWDFIRY 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+K+ I VGPGRGS AGS+ +Y L ITD+DPL F LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 345  ARKHEIQVGPGRGSAAGSMVSYCLGITDVDPLEFDLLFERFLNPERVSMPDIDIDFCYER 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI YV  KYG   VAQI+TFG++ A+ A+RDVGRAL M Y++VD + K +P      
Sbjct: 405  REEVIDYVNRKYGDSHVAQIVTFGTMAARNAIRDVGRALDMSYAKVDYIAKQVPQALNMT 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+     F+     +     L++++ KLEGL RH STHAAG+VI    L++ VP+ 
Sbjct: 465  IE-KALEVSETFKGIYDGEEDSRLLIDMALKLEGLPRHTSTHAAGVVISKDELTEYVPLT 523

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            R     +  TQFNM  +E+ GL+K DFLGL+TLT+++ +++ + +     ++     ++D
Sbjct: 524  R--NDKIIATQFNMIELEELGLLKMDFLGLRTLTVIRDAINLIKENQGKTINFDNFNYND 581

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             E   +     TLG+FQ ESSGMR  L+ ++PD   D++A  +L+RPGP+  I  +   K
Sbjct: 582  PEVLKMFAKSETLGVFQFESSGMRAFLKELKPDEFSDLVAANALFRPGPMKQIPKFVGSK 641

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            + K  I  IHP ++P+LK T G I+YQEQVMQI Q + GYSL  AD++RRA+ KK  + M
Sbjct: 642  HDKSTISYIHPKLEPILKSTYGCIVYQEQVMQIVQQIGGYSLGRADIVRRAISKKKMKVM 701

Query: 726  DKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +++++ FI G  +        NG+ +  A  I++L+  FADY FNKSH+ AY+V++Y+TA
Sbjct: 702  EEERKNFIYGNKEEGVCGAIANGVDEKSANEIYDLIIDFADYAFNKSHSVAYSVVAYRTA 761

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K +YP EF+AA ++   ++++++  + ++ ++  I+I+PP++N    +F V DN+I +
Sbjct: 762  WLKYYYPREFMAAQISTYTNDIKQVSLYIEEIKRLGIEILPPNINYSYKNFTVEDNKIRF 821

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGALDCF 894
             L A+K VG      I+      P+ SL+DF  R+   D   LN+R +ESL+  GA+D F
Sbjct: 822  GLKAVKNVGDNLIDVIVRTRDKGPYKSLKDFVDRINALDKSALNKRAVESLIRCGAMDDF 881

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R Q L   + I   +    KN      ++F  E     D   L  F       + + 
Sbjct: 882  RGNRAQYLAIYEGILSSSSNTAKNNVMGQFSLF-EEADLQEDLPRLRDFP---QKDKLDM 937

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-----VATIRGNNIRLAAMVVSKQQKKT 1009
            E+ V+G Y SGHPLD Y+ ++ K       +         +R + +++  ++ SK+   T
Sbjct: 938  EKEVIGMYISGHPLDPYRELIEKNSSINTNQIFEKYRENLLRRSKVKVGGILKSKKTMIT 997

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            +    + +    +     E   FP
Sbjct: 998  KTNKMMAFAALEDLFGTIELVIFP 1021


>gi|288870429|ref|ZP_06114074.2| DNA polymerase III alpha subunit [Clostridium hathewayi DSM 13479]
 gi|288867209|gb|EFC99507.1| DNA polymerase III alpha subunit [Clostridium hathewayi DSM 13479]
          Length = 1171

 Score = 1061 bits (2743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1050 (35%), Positives = 568/1050 (54%), Gaps = 40/1050 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            ++ +F HL VH+ YSLL+G+  +  +  +       ++AITD   ++  ++F + A   G
Sbjct: 10   RNVAFTHLHVHTEYSLLDGSCKIKELTARAKELGMDSMAITDHGVMYGVIDFYRAAREVG 69

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIGC++ +                     +VLL    +GYQ L+++VS+ ++ D   
Sbjct: 70   IKPIIGCEVYVTAGSRFDRETTNGE--DRYYHLVLLAENNQGYQNLMKIVSKGFV-DGFY 126

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVN 185
               R+    L+    EG+I L+   +G + R       +  +   L ++++FG+   ++ 
Sbjct: 127  YKPRVDYEVLETYH-EGIIALSACLAGEVQRYIERGMYEQGKNAALRYQQIFGEGNFFLE 185

Query: 186  LQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H    ++  +Q +++++    + LVATN+  +   +D   HD+L+ +     V+ ++
Sbjct: 186  LQDHGIPAQHTVNQGLMRMSRETGIKLVATNDIHYTFADDATPHDILLCIQTGKKVTDEN 245

Query: 245  RPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R     +Y K   EM  +F    EA++NT +IA RC+  ++     LPR+   E  D 
Sbjct: 246  RMRYEGGQYYCKTEEEMRKLFPYASEAIDNTHDIAERCNVEIEFGVTKLPRYDVPEGYD- 304

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                   L      GL                  + RL++ELNVI  M +  YFLIV DF
Sbjct: 305  ---SWGYLNKLCFEGLAKHYPDDDGT-------LKARLEYELNVIHTMGYVDYFLIVWDF 354

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I +A+  +I VGPGRGS AGS+ +Y L IT+IDP+R++LLFERFLNP+R+SMPD DIDFC
Sbjct: 355  IHYARSQDIIVGPGRGSAAGSIVSYCLGITNIDPIRYNLLFERFLNPERVSMPDIDIDFC 414

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR EVI YV  KYG E+V QI+TFG+L AK  +RDVGR L MPY++ D + K+IP D 
Sbjct: 415  FERRQEVIDYVVRKYGKEQVVQIVTFGTLAAKGVVRDVGRVLDMPYARCDAIAKMIPGDL 474

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A+      R A   DP V  L+++S +LEGL RH S HAAG+VI    + + V
Sbjct: 475  GMTLE-KALKQSPDLRNAYNEDPEVKYLIDMSMRLEGLPRHTSMHAAGVVISRTSVDEYV 533

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
            P+ +        TQF M  +E+ GL+K DFLGL+TLT++Q ++  +   RGV +D+  I 
Sbjct: 534  PLSKAA-DGTITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVKAVEKNRGVVLDMDTID 592

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +DD      + T    G+FQLESSGM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y 
Sbjct: 593  YDDKAVLESIGTGKDDGVFQLESSGMKSFMKELKPQSLEDIIAGISLYRPGPMDFIPKYL 652

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              KN         P ++P+L  T G I+YQEQVMQI + L+GY++  +D++RRAM KK  
Sbjct: 653  KGKNDPSSATYDCPQMEPILSPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSKKKT 712

Query: 723  EEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              M+K+++ F+         G   NGI +  A +I++ +  FA Y FNKSHAAAYAV+SY
Sbjct: 713  SVMEKERQNFVYGNPEEGVKGCIANGIDEKTANHIYDEMIDFAKYAFNKSHAAAYAVVSY 772

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YP E++AA +T  MDNV K+ ++    RQ  I I+PP +N     F V    
Sbjct: 773  QTAFLKYYYPQEYMAALLTSVMDNVTKVSEYILSCRQMGISILPPDINEGESGFSVSGGA 832

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L+AIK VG +    I+ E  +   F S+EDF  R+ +K++N+R LE+ + +GALD 
Sbjct: 833  IRYGLSAIKSVGKSVVDLIVTERESSGLFTSIEDFVDRMSNKEVNKRTLENFIKSGALDT 892

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVR 951
               +R Q +     +       +KN       +F  A E+     +IT            
Sbjct: 893  LPGTRKQKILVAPELLDQRSKEKKNSMEGQLTLFDIASEEEKTRYQITFPNVGEFPKEEL 952

Query: 952  FENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYE-------ESVATIRGNNIRLAAMVVS 1003
               E+  LG Y SGHPL+ Y+   R  +     +       E      G+ + +  M+  
Sbjct: 953  LAFEKEALGIYVSGHPLEAYETTWRNNITAVTIDFIVDEETEEARVKDGSYVTIGGMITG 1012

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K  K TR    + ++T  +     E   FP
Sbjct: 1013 KTVKTTRNNKLMAFLTLEDLVGSVEVIVFP 1042


>gi|54296983|ref|YP_123352.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Paris]
 gi|53750768|emb|CAH12175.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Paris]
          Length = 1148

 Score = 1061 bits (2743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1039 (41%), Positives = 625/1039 (60%), Gaps = 35/1039 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VH+ +SL++G + +  ++  + A     +A+TD  NLF+A++  + A  AGI+P
Sbjct: 4    RFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L                    + S+VLL     GY+ L  LVS+ Y   Q     
Sbjct: 64   IIGSDLPCH----------DLETPDNIFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHGQP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+ L W+ E  ++GLI L+GG  G I +A   N   +A KR L +  LF +R Y+ +QR 
Sbjct: 114  RVQLQWIPEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRT 172

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
               D      ++V LA   +LPLVATN+  F++E+D++AH+  + +     ++   R  +
Sbjct: 173  GRADELHYNEKLVALADELQLPLVATNDVRFINEDDFDAHEARVCIHEGYTLADPRRVQQ 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YL++  EM  +FSDLP AL+NTVEI++RC+  L++    LP F   +   +    
Sbjct: 233  YSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDGTTV---- 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYH-----AQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            E  L + +  GLE RL Q    K          +Y +RL  EL+VI  M F+GYFLIVAD
Sbjct: 289  EAYLSHLSEIGLEERLKQLFRDKSEGELLVARGEYDKRLKIELDVINNMGFAGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI YV  KYG + V+QIITFG++ AKA +RDVGR L  PY  VD+L KLIP +
Sbjct: 409  CMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +S +A+  +   R     +  V  L +++ KLEG+ R+A  HA G+VI    L+  
Sbjct: 469  LGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGVTRNAGKHAGGVVIAPSQLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
              +Y +  S   V+QF+   +E  GL+KFDFLGL+TLT++  +L  + ++        +D
Sbjct: 528  TAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPID 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +S IP  D  T+ LL    T  +FQLES GM++ +  +QPDC EDIIALV+L+RPGP+ +
Sbjct: 588  ISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  + +RK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L  AD+LRR
Sbjct: 648  GMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRR 707

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ+E F  GA   G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++YQ
Sbjct: 708  AMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQ 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TAW+K HYP  F+AA M+ +MDN +K+  F  +     +Q++PPS+N     F V D + 
Sbjct: 768  TAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFTVSDEKT 827

Query: 836  -YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
              Y L AIKGVG +    I++    + PF  L  FC R+D +K+NRRV+E+L+ +GA D 
Sbjct: 828  IIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDI 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            +   R  L  SL+   K A+   +N+++   ++F+  +   +D+    +    + + R E
Sbjct: 888  WKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDK-ADEQNYVESKSWSEAQRLE 946

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ VLGFY +GHP D Y+  L    I    +   ++    I + A VV+ ++  T++G 
Sbjct: 947  GEREVLGFYLTGHPADRYRRELGDF-IVPVGQLNPSLHKKAI-ICAQVVAIRKIITKRGK 1004

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            ++  +   +     +A  F
Sbjct: 1005 KLVIIGMDDATARIDAVVF 1023


>gi|298531048|ref|ZP_07018449.1| DNA polymerase III, alpha subunit [Desulfonatronospira thiodismutans
            ASO3-1]
 gi|298509071|gb|EFI32976.1| DNA polymerase III, alpha subunit [Desulfonatronospira thiodismutans
            ASO3-1]
          Length = 1156

 Score = 1061 bits (2743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1035 (39%), Positives = 616/1035 (59%), Gaps = 30/1035 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL  H+ YSLL+GA+ + ++  +      PA AITD  N+F +L F  +A   GI+P
Sbjct: 3    DFTHLHCHTEYSLLDGAIRITDLCARAVDLGMPAAAITDHGNMFGSLNFYLEAKKYGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +     +K              +VLL    EGY  L+++V+R +L D      
Sbjct: 63   IIGCEVYLAQNHQVK--------DQLRYHLVLLAMDKEGYHNLVKIVTRGWL-DGFYYKP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L +   +G+I L+    G +         + A +  L +  +F  R Y+ ++ +
Sbjct: 114  RVDKDIL-KAHNQGIICLSACLQGEVQHVLRRQGFKQARETALQYADIFPGRFYLEMEAN 172

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     Q+++++   +LP+VATN+  +L  +D +AHD+L+ +  ++ V    R R 
Sbjct: 173  GIPEQMEVNDQLLEMSRETQLPVVATNDCHYLGPDDVQAHDILLCIQTNSKVQDSSRMRF 232

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  Y K+  EM   FS  P+ALEN  EI +RC+  ++      PR+     + +    
Sbjct: 233  DTDQLYYKSVEEMEKEFSHCPQALENVQEIIKRCNLEIETDTFHFPRYTPSRENTL---- 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + E  + +  GL+ R  +  +      + YR+RL+ EL +I  M F GYFLIV DFI WA
Sbjct: 289  DEEFISLSREGLQQRFQE--LPYSVDQKHYRERLEEELEIICSMGFPGYFLIVQDFINWA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K   IPVGPGRGS AGS+ AYAL IT++DP+R++LLFERFLN +R SMPD D+DFC D+R
Sbjct: 347  KSQGIPVGPGRGSAAGSLVAYALRITNLDPIRYNLLFERFLNKERASMPDIDVDFCYDQR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            ++VIRYV  KYG + VAQI TFG+++A+A +RDVGRAL M  S  D++ KLIP +    +
Sbjct: 407  EKVIRYVAEKYGRDSVAQITTFGTMKARAVVRDVGRALGMKLSLTDKIAKLIPEELKMTI 466

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   R+    D  V RL++I ++LEG+ RHASTHAAGIVI DR + + +P+YR
Sbjct: 467  D-KAMQQEPDLRKMVDEDEDVARLMDICRRLEGMVRHASTHAAGIVISDRAMQEHLPLYR 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606
              + ++ VTQF+MK +EK GLIKFDFLGLKTLT+L+ +L   ++      DL  +P +D 
Sbjct: 526  GKKDEV-VTQFDMKRVEKVGLIKFDFLGLKTLTVLKDTLAMASRNGQETPDLDSLPLEDP 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
            ET+ LL    T G+FQLESSGMR  L  ++P C EDIIAL++LYRPGP+++ +V  +  R
Sbjct: 585  ETFKLLGRGLTDGVFQLESSGMRNVLVDLKPTCFEDIIALLALYRPGPLESGMVTDFIKR 644

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G   +   HP ++P+LKET GVI+YQEQVM+IAQ+L+GYSL + D+LRRAMGKK    
Sbjct: 645  KHGLVPVEYPHPELEPVLKETYGVILYQEQVMKIAQVLAGYSLGDGDILRRAMGKKEASV 704

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M +Q+ +F+ GA ++G+ +  A  IF+L+ KFA YGFNKSH+AAYA+ISYQTA++K H+P
Sbjct: 705  MARQRSKFLQGAKEHGVKQETAEYIFDLVEKFAGYGFNKSHSAAYALISYQTAYLKAHFP 764

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF+AA +T E++N +K+       R   I ++PP +N+   +F V +N++ + L+ IK 
Sbjct: 765  SEFMAALITSEVNNTDKVIAHVNACRDMEITVLPPCINSSLNEFSVENNQVRFGLSGIKN 824

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG +    I+     + PF++L DFC RV S+K  +RVLE L+ +GA+D  G SR  LL 
Sbjct: 825  VGRSAIEAIIRERKKNGPFENLLDFCERVGSRKAGKRVLEMLIKSGAMDTLGCSRRALLD 884

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGT------FSDKITLEKFSVENSSVRFENEQR 957
             +D +   AQ   KN+     ++ +                   +        + + E+ 
Sbjct: 885  GMDMVAARAQRSAKNKVKGQLSMLSLLGEETCQVKGLGLDCPENELEEFQEDEKLKLEKE 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             LGFY SGHPL  ++  ++++ +   +E +    G  + L  ++V K++  ++KG ++ +
Sbjct: 945  ALGFYLSGHPLLPFRRDIQRLKLSTIQECLELRPGTQVELPVIIVGKKEHVSKKGDKMAF 1004

Query: 1018 VTFSEPAKEYEANFF 1032
                +     E   F
Sbjct: 1005 CQIEDLTGTAEVTIF 1019


>gi|332178643|gb|AEE14332.1| DNA polymerase III, alpha subunit [Thermodesulfobium narugense DSM
            14796]
          Length = 1138

 Score = 1060 bits (2742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1033 (39%), Positives = 614/1033 (59%), Gaps = 29/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL+GA  L++I+ K   D   A+A+TD  N++ AL+F   A    I+P
Sbjct: 2    SFVHLHVHSEYSLLDGASRLDDIILKAKNDNMQALALTDHGNMYGALKFYSLAKEHEIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ I   D  K T         +  ++L+    EGY+ L+ LVS  +L        
Sbjct: 62   LIGCEMYIT-DDMTKQTRANGDLDTYLSHLILIAKDFEGYKNLVRLVSFGFLKG-FYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI L  L E   +GLI+ +    G I +    N    A +   TFK+ FGD  Y+ +Q H
Sbjct: 120  RIDLKTLFEY-KKGLIVSSACMYGRIPQLILSNKKDQAVELAKTFKEQFGDDFYLEIQDH 178

Query: 190  RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +  +    ++ ++    +PL+ATN+S + ++ED E HDVL+ +     V  ++R + 
Sbjct: 179  GLPEEKKLIPVIINMSQDLNIPLIATNDSHYTNKEDAEFHDVLLCIQTKKTVQDENRMKF 238

Query: 249  TPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  Y K   EM  +FS   +A+ENT+ +A +CS  L +    +P+F   E     K E
Sbjct: 239  NTDSLYFKTSEEMKELFSYCKDAVENTLIVADKCSLELPIGKVTVPKFPCPEG----KSE 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L      GL  R       KG   ++  +RL +EL++I +  + GYFLIV+D+I +A
Sbjct: 295  REYLNLLIEKGLNRRY------KGNITKEIEERLKYELDIIQKTGYEGYFLIVSDYINYA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N I VGPGRGS AGS+ AY L ITDIDPL+++LLFERFLNP+R++ PD D+DFC ++R
Sbjct: 349  KENGIQVGPGRGSAAGSLVAYVLGITDIDPLKYNLLFERFLNPERVNPPDIDVDFCIEKR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +V+ Y+  +YG E VAQI TFG++ A+A +RDVGR L  P S VD+L KLIPN P    
Sbjct: 409  AQVLNYLVKRYGQENVAQIGTFGTMNARAVVRDVGRTLGKPLSIVDKLAKLIPNKPGSQA 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            +L+   +    ++   ++PS+  L E S KLEGL RH+S HAAG+VI   P+  L+P+ R
Sbjct: 469  TLKEAEELQEVKQFLNSNPSLKELWEKSIKLEGLTRHSSVHAAGVVISPFPIYDLIPLQR 528

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D+PVTQ+ M+ +EK+G +K D LGL+ LT++ K+L+ + + RG+KVD+  IP DD 
Sbjct: 529  PSEGDVPVTQWPMEDVEKSGFLKMDLLGLRNLTVIGKTLELIEKTRGIKVDIEDIPLDDP 588

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
            + Y LL    TLG+FQLESSGM+Q L+ ++PD  ED+IA+++LYRPGP+++ +V  +  R
Sbjct: 589  KVYELLERGETLGVFQLESSGMQQLLKEVKPDKFEDLIAILALYRPGPMNSGMVEQFIRR 648

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+ KE +V IH  ++P+L ET GV+IYQEQ+MQ+A +L+G+SL EAD+LRRAMGKK  E 
Sbjct: 649  KHKKEPVVFIHKDVEPILSETYGVMIYQEQIMQLASILAGFSLGEADLLRRAMGKKKAEV 708

Query: 725  MDKQKERFISGASKNG-ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            M  QK +F+ GA   G IS+  A  IF+ +AKFA+YGFNKSH+A+YA+I+Y+TAW+K +Y
Sbjct: 709  MAAQKPKFVEGAINKGLISREQAEKIFDDMAKFAEYGFNKSHSASYALITYRTAWLKVYY 768

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              E++AA ++    + +K+ ++ ++A++F ++++ P VN    +F V  N+I + L+AIK
Sbjct: 769  TPEYMAALLSSVSSDTDKVAEYIKEAKKFGVEVLSPDVNESGENFTVIGNKIRFGLSAIK 828

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+    +D  F +L DF  R  SK +N+++ E+L+ AGALD     R+ LL
Sbjct: 829  GVGKAAIDTILANRLSDGNFKNLRDFIYRTSSKSVNKKIYENLIKAGALDNLYKDRLNLL 888

Query: 903  QSLDNIQKYAQWVEK--NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
              LD +    +   K  N  +     F  E+    + I +      + S++   E+ VLG
Sbjct: 889  DQLDEVLALVKKSTKTDNEHSLFNEAFDEEELYIDNDIEIIPKKDFDPSLKLAFEKEVLG 948

Query: 961  FYFSGHPLDVYK---PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             Y SGHPL  YK     +    I    E         +++  +V +K+Q   + GS    
Sbjct: 949  LYVSGHPLKPYKFLINSISNFNISSLNEL----DTEKVKICGIVFNKKQVFKKDGSFFFV 1004

Query: 1018 VTFSEPAKEYEAN 1030
            +   +     E  
Sbjct: 1005 LNIEDLTGSVECI 1017


>gi|331092255|ref|ZP_08341083.1| hypothetical protein HMPREF9477_01726 [Lachnospiraceae bacterium
            2_1_46FAA]
 gi|330401687|gb|EGG81266.1| hypothetical protein HMPREF9477_01726 [Lachnospiraceae bacterium
            2_1_46FAA]
          Length = 1157

 Score = 1060 bits (2742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1046 (34%), Positives = 570/1046 (54%), Gaps = 40/1046 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G+  +   + ++      + AITD   +F  ++F + A A GI+PI
Sbjct: 3    FAHLHVHTEYSLLDGSNKIKEYVARVKELGMDSAAITDHGVMFGVIDFYRAAKAEGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +  Q         +        +VLL    +GY+ L ++VS+ ++        R
Sbjct: 63   LGCEVYVAPQSRFDKEVGTRE--DRYYHLVLLAENNKGYENLTKIVSKAFVEG-YYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            +    L++   EG+I L+   +G + +       + A K    ++K+F     ++ LQ H
Sbjct: 120  VDYELLEQYH-EGIIALSACLAGEVQKNLLRGMYEEAVKSAKRYEKIFGKGNFFLELQDH 178

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     ++++L+    + LVATN+  +   ED + HD+L+ +     +  ++R R 
Sbjct: 179  GIPEQATVNQRLLRLSQDTGIELVATNDVHYTYAEDEKPHDILLCIQTGKKLQDENRMRY 238

Query: 249  TPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                Y  K+  EM  +F    +ALENT +IA RC   ++     LPR+            
Sbjct: 239  EGGQYYVKSPEEMAELFPYALQALENTQKIADRCDVEIEFGVTKLPRYDVPSG----YTS 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L      GL  R            ++  +RL +EL+VI +M +  YFLIV DFI++A
Sbjct: 295  WEYLNKLCFDGLASRYQP-------VTEELGERLTYELSVIQKMGYVDYFLIVWDFIKYA 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            + N+I VGPGRGS AGS+ +Y L ITDIDP+R+ LLFERFLNP+R+SMPD DIDFC +RR
Sbjct: 348  RDNDIMVGPGRGSAAGSIVSYCLGITDIDPIRYQLLFERFLNPERVSMPDIDIDFCFERR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RV QI+TFG++ A+  +RDVGR + +PY+ VD + K+IP +    +
Sbjct: 408  QEVIDYVVRKYGADRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDTIAKMIPTELNMTL 467

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            + +A++ +   ++    D  V  L+++S +LEGL RH S HAAG+VI  +P+ + VP+  
Sbjct: 468  T-KALSVNPELKKVYEEDAEVKELIDMSLRLEGLPRHTSMHAAGVVISQKPVDEYVPLSL 526

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                    TQF M  +E+ GL+K DFLGL+TLT++Q +     +    K+D+  I ++D 
Sbjct: 527  GA-DGAVTTQFTMTTLEELGLLKMDFLGLRTLTVIQNAAKLAEKSSGHKIDMHKINYNDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            E    + T  T GIFQLES+GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 586  EVLESIGTGKTDGIFQLESAGMKNFMKELKPQNLEDIIAGISLYRPGPMDFIPQYIKGKN 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +  I    P ++P+L+ T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK  + M+
Sbjct: 646  DRGSITYDCPQLEPILESTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKADVME 705

Query: 727  KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+++ F+         G   NGI +  A  I++ +  FA Y FNKSHAAAYAV++YQTA+
Sbjct: 706  KERQNFVYGNEEEGVPGCVANGIPEETANKIYDEMIDFAKYAFNKSHAAAYAVVAYQTAY 765

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPVEF+AA MT  +DN  K+ ++   +RQ  I I+PP +N    +F V +  I Y 
Sbjct: 766  LKYYYPVEFMAALMTSVIDNPGKVSEYIYASRQMGIHILPPDINEGEGNFSVDNGNIRYG 825

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            LAAIK +G      I+        + +L++F  R+  K++N+R +E+ + AGA D    +
Sbjct: 826  LAAIKSIGRPVIEAIITEREIGGKYQNLKNFIERLSGKEVNKRTIENFIKAGAFDSLPGT 885

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENE 955
            R QL+     I        KN  +   ++F    E+      I L              E
Sbjct: 886  RKQLMMIYIQILDQVNKDRKNSMSGQMSLFDLVDEEQKKEFDIPLPDVKEYEKETMLAFE 945

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQK 1007
            + VLG Y SGHP++ Y+ + +K       +              G+   +  ++V+K  K
Sbjct: 946  KEVLGVYVSGHPMEEYEELWKKSISATTMDFQPGEETGRSKVRDGSKEIIGGLIVNKTIK 1005

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+    + ++T  +     E   FP
Sbjct: 1006 YTKNNKVMAFLTIEDLLGTVEVVIFP 1031


>gi|315652846|ref|ZP_07905820.1| DNA-directed DNA polymerase III alpha subunit [Eubacterium saburreum
            DSM 3986]
 gi|315485048|gb|EFU75456.1| DNA-directed DNA polymerase III alpha subunit [Eubacterium saburreum
            DSM 3986]
          Length = 1152

 Score = 1060 bits (2742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1046 (35%), Positives = 574/1046 (54%), Gaps = 37/1046 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +  I+ +       ++AITD   ++  ++F ++A A GI+P
Sbjct: 2    SFTHLHVHTGYSLLDGSCKIKEIISRAKKLNMASLAITDHGVMYGVIDFYKEAKANGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +      +   +          ++LL    +GY+ L ++VS+ +         
Sbjct: 62   ILGCEVYVSPSSRFEKQAK---QGDRYYHLILLAKNNKGYENLTKIVSKGFTEG-FYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI    L+E   EG+I L+   +G I +       + A+K    +K LF  D  Y+ LQ 
Sbjct: 118  RIDFELLKEYH-EGIIALSACLAGEIPKLISRGREEEAKKVAKKYKDLFGEDNFYLELQN 176

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ +    +V++    ++PLVATN+  +++ ED +AHD+L+ +     VS  DR R
Sbjct: 177  HGIPEQKFVNQSLVKIGKELDIPLVATNDIHYINAEDAKAHDILLCIQTGKTVSDPDRMR 236

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +  K+  EM ++F   PEA+ENT +IA  C+  ++     LP +        +  
Sbjct: 237  YEGGQFFLKSEDEMKALFPYAPEAVENTGKIADMCNVEIKFGETKLPEYPVPNNLSAR-- 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L +   +G E    +    +    ++  +R+ +EL VI  M +  YFLIV D+I +
Sbjct: 295  --EYLESLCKSGFERNYPKDYENR----EEIEKRMYYELGVIETMGYIDYFLIVWDYINY 348

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I VGPGRGS AGSV +Y L ITDIDP++++L+FERFLNP+R+SMPD D+DF  +R
Sbjct: 349  ARSVGISVGPGRGSAAGSVVSYCLGITDIDPIKYNLIFERFLNPERVSMPDIDVDFADER 408

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG ERV QIITFG+LQA+  +RDVGRA+++PY++ D + K+IP D    
Sbjct: 409  RGEVIDYVVGKYGSERVCQIITFGTLQARGVIRDVGRAMEIPYARCDSIAKMIPRDKDIT 468

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +SL A+  +   +E   +D  V  L++ S KLEGL RHAS HAAG+VI  + + + VP+ 
Sbjct: 469  LSL-ALERNKELKELYDSDEVVHELIDYSLKLEGLPRHASIHAAGVVISKKAVDEYVPLA 527

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
              +  D   TQF M  +E+ GL+K DFLGL+TLT+LQ +L+ + +   V +DL  I + D
Sbjct: 528  LGI-DDAVTTQFTMTTLEELGLLKMDFLGLRTLTVLQNALEMIKKNHGVDIDLKKIDYSD 586

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             + Y  ++T  T  +FQLES GM+  ++ ++P+ +EDIIA +SLYRPGP+D I  Y + K
Sbjct: 587  KKVYEFISTGKTDAVFQLESGGMQNFMKRLKPENLEDIIAGISLYRPGPMDFIPKYIDGK 646

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N K K+    P +  +L+ T G I+YQEQVMQI + L+GY++  +D +RRAM KK    M
Sbjct: 647  NSKGKVSYDTPKLISILEPTYGCIVYQEQVMQIVRDLAGYTMGGSDEVRRAMSKKKAHVM 706

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            + +++ FI         G  KNGI + +A  IF+ +  FA Y FNKSHAA YAVISYQTA
Sbjct: 707  EMERKNFIYGNEEKKIKGCIKNGIDEKVANRIFDEMIDFASYAFNKSHAACYAVISYQTA 766

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YP EF+AAS+T   DN  K+ ++        I+I+PP VN     F V  + I +
Sbjct: 767  YLKYYYPKEFMAASLTSVSDNPAKLSEYMGSLTDMGIKILPPDVNLGEGAFSVDKDGIRF 826

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LA IKGVG   A  ++     +  + +LE+F +R+  K LN+R +ES + AGALD    
Sbjct: 827  GLATIKGVGKAVADVLVRERTLNGRYLTLENFINRLPQKDLNKRSIESFIKAGALDGLAG 886

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFEN 954
            +R + + + + +        K       + F        D     +            + 
Sbjct: 887  NRHEKILNAELLIDKKSKESKAVIPGQISFFDVVDKDDRDSFVSEMIHIDEYKKEELLKY 946

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-------GNNIRLAAMVVSKQQK 1007
            E  VLG Y SGHPL+ Y  +L K       +             G  + +  ++    ++
Sbjct: 947  EMEVLGMYVSGHPLEEYITMLEKYTDVRSIDFYPDEDGNILIESGRKVVVGGLLSEVNKR 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+KG  +   T  +     E   FP
Sbjct: 1007 FTKKGDMMAICTLEDMYGRIELVVFP 1032


>gi|167768149|ref|ZP_02440202.1| hypothetical protein CLOSS21_02705 [Clostridium sp. SS2/1]
 gi|317499630|ref|ZP_07957892.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167709673|gb|EDS20252.1| hypothetical protein CLOSS21_02705 [Clostridium sp. SS2/1]
 gi|291560175|emb|CBL38975.1| DNA polymerase III catalytic subunit, DnaE type [butyrate-producing
            bacterium SSC/2]
 gi|316893105|gb|EFV15325.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 1151

 Score = 1060 bits (2741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1046 (35%), Positives = 572/1046 (54%), Gaps = 39/1046 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +  ++ +       +IAITD   ++  ++F + A A GI+P
Sbjct: 2    SFTHLHVHTEYSLLDGSSKIKELVHQAKELGMDSIAITDHGAMYGVIDFYRAAKAEGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +          +          +VLL     GY  L+++VSR +         
Sbjct: 62   IIGCEIYVTTGSRFD--KEASQGDKRYYHLVLLAQNDTGYHNLMKIVSRGFTEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L+E   EGLI L+   +G +      N+ + A+   L  + LF  D  ++ LQ 
Sbjct: 119  RVDYEVLEEY-KEGLIALSACLAGEVATYIRENNYEKAKNTALRLQDLFGKDNFFLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+    + +++++    + LVATN+  +  +ED EAHD+L+ +     V  +DR R
Sbjct: 178  HGIPDQTKVNTALLKMSKETGIDLVATNDIHYTFKEDAEAHDILLCIQTGKKVQDEDRMR 237

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +YLK+  EM  +F    EA+ENT +IA+RC+  +      +P +   E       
Sbjct: 238  YEGGQYYLKSPEEMQRLFPYAREAIENTGKIAKRCNVEIVFGEQKVPEYDVPEG----YT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L +    GL+ R            ++ R+RLD+EL  I  M +  YFLIV DFI +
Sbjct: 294  AVTYLNHLCEEGLKRRYPN-------ITKELRERLDYELKTIENMGYVDYFLIVWDFIHY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK++ I VGPGRGS AGS+ +Y L ITDIDP+R+ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  AKEHGIAVGPGRGSAAGSIVSYCLEITDIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG ++V QIITFG++ A+A +RDVGR L +PY++VD + K++PN+    
Sbjct: 407  RQEVIDYVVRKYGKDQVVQIITFGTMAARAVIRDVGRVLDIPYAKVDGISKMVPNELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+      R A   D     L+++S++LEGL RHAS HAAG+VIG   + + VP+ 
Sbjct: 467  ID-KALKISKDLRNAYEQDEETHYLIDMSKRLEGLPRHASMHAAGVVIGKTAIDEYVPLA 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                 +  VTQF M  IE+ GL+K DFLGL+TLT++Q +   + ++    D++ I   D 
Sbjct: 526  TGA-DNAAVTQFTMTTIEELGLLKMDFLGLRTLTVIQDAEKMVRRKVPDFDITKIDPTDK 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            E Y ++    T G+FQLESSGM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 585  EVYEMIGNGHTEGVFQLESSGMKSFMKELKPQNMEDIIAGISLYRPGPMDFIPRYIEGKN 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +E I      ++ +L+ T G I+YQEQVMQI   L+GY+L  +D++RRAM KK  + M 
Sbjct: 645  HQESIHYECEQMEEILEPTYGCIVYQEQVMQIVMKLAGYTLGRSDLVRRAMSKKKGDVMI 704

Query: 727  KQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+++ F+ G  +        NGI +  A  I++ +  FA Y FNKSHAAAYAV++Y+TA+
Sbjct: 705  KERQNFVYGNEEEGIPGCINNGIDEKTANQIWDEMLDFAKYAFNKSHAAAYAVVAYRTAY 764

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            ++ HYPVEF+AA +T  + N  KI ++    ++  I+I+PP +N     F V    I Y 
Sbjct: 765  LRCHYPVEFMAALLTSVLGNTNKISEYSYACKKLGIKILPPDINYGEGAFSVDHGNIRYG 824

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIK +G      I+     + P+   +D   R+ SK++N+R +E+L+ +GALDCF  +
Sbjct: 825  LTAIKSLGRPVIEAIIRERNLNGPYRDFKDLVERLSSKEINKRTVENLIKSGALDCFHVT 884

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKFSVENSSVRFENE 955
            R Q +    ++    Q   KN      ++     E+   S +I+           +   E
Sbjct: 885  RKQQMIVYASVIDSIQKERKNEIAGQMSLMDLLGEEDQQSFQISYPDVGEYEKEQKLAME 944

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR--------LAAMVVSKQQK 1007
            + VLG Y SGHPL+     L +       + V        +        +  ++     K
Sbjct: 945  KEVLGIYVSGHPLEDDIERLERSVTAHTSDFVIDEETGKTKIHDRESCIIGGLISEMSVK 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+K   + ++T  +     E   FP
Sbjct: 1005 LTKKNQNMAFITLEDLRGTVEVVVFP 1030


>gi|148239403|ref|YP_001224790.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 7803]
 gi|147847942|emb|CAK23493.1| DNA polymerase III alpha subunit [Synechococcus sp. WH 7803]
          Length = 1173

 Score = 1060 bits (2741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/1054 (37%), Positives = 589/1054 (55%), Gaps = 41/1054 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++  A   PA+A+TD   ++ A+E  +    AGI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPQMVERAKALGMPALALTDHGVMYGAVELLKLCKGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ +          + +  +     +V+L   A GY+ L++L S  +L     + +
Sbjct: 62   IIGNEMYVINGSIDDPQPKKERRY----HLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 117

Query: 130  --RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              R C+   L +  +EGLI+ T    G I +A       VA      ++++FGD  Y+ +
Sbjct: 118  FSRACIDKHLLQQHSEGLIVATACLGGEIPQAIMRERPDVARDVARWYQEVFGDDFYLEI 177

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    DR    ++V++A    + LVATN++ +L+  D EAHD L+ V    ++S + R
Sbjct: 178  QDHGSPEDRIVNVEIVKIAQELGIQLVATNDAHYLTSNDVEAHDALLCVLTGKLISDEKR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             R T   YLK+  EM  +F+D        +A+ NTV +A +      +    +PRF   E
Sbjct: 238  LRYTGTEYLKSEEEMGRLFADHLDPAVVQQAIANTVSVAEKVEDYDILGRYQMPRFPIPE 297

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                       LR     GL  RL  G  A G     Y  RL  EL ++ +M F  YFL+
Sbjct: 298  G----HTPVTYLREVTEQGLRDRL--GLSADGTIEATYADRLSHELQIMEQMGFPTYFLV 351

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D+I++A++  IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D
Sbjct: 352  VWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDID 411

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
             DFC +RR EVI YV  +YG E+VAQIITF  + +KA L+DV R L +PY   DRL KLI
Sbjct: 412  TDFCIERRGEVIDYVTRRYGEEKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLI 471

Query: 480  PNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            P     P  L+A+  D      F+E    DP V R ++++ ++EG  +    HAAG+VI 
Sbjct: 472  PVVRGKPAKLKAMIGDESPNPDFKEKYDKDPVVQRWVDMAMRIEGTNKTFGVHAAGVVIA 531

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
              PL +LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +AQ    
Sbjct: 532  ADPLDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVAQSSGE 590

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            ++D   +P  D  T+ LL      GIFQLES+GMRQ +  ++P  +EDI ++++LYRPGP
Sbjct: 591  RIDPDQLPPQDQGTFDLLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYRPGP 650

Query: 655  IDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +D   I  + NRK+G+E I   H  ++P+L ET G+++YQEQ+M+IAQ L+GYSL EAD+
Sbjct: 651  LDAGLIPKFINRKHGREAIDFAHSTLEPILSETYGIMVYQEQIMRIAQDLAGYSLGEADL 710

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK   EM K +  F+ GAS+ G+ + +A  +F+ +  FA+Y FNKSH+ AY  +
Sbjct: 711  LRRAMGKKKVSEMQKHRGIFVKGASERGVDEKVADELFDQMVLFAEYCFNKSHSTAYGAV 770

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTA++K HYPV ++AA +T+     +K++++  +     I++MPP VN    DF   D
Sbjct: 771  TYQTAYLKAHYPVAYMAALLTVNAGASDKVQRYISNCNAMGIEVMPPDVNASGTDFTPRD 830

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             RI + L+A++ +G    R ++ +  AD PF+SL D C RV S  +NRR LESL+  GA+
Sbjct: 831  QRILFGLSAVRNLGDGAIRALIRSREADGPFESLADLCDRVPSSVINRRSLESLIHCGAM 890

Query: 892  DCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE----------KGTFSDKIT 939
            D      +R QL+  LD +  +A    ++R +   N+F                 S    
Sbjct: 891  DALEPEANRAQLIADLDLLLDWATSRARDRASGQGNLFDLMAGAAGGEADAPTDLSLAPK 950

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
                   + S + + E+ ++GFY S HPL    P  R +   G            +   A
Sbjct: 951  AAPVKDYHPSEKLKLEKDLVGFYLSDHPLKQLTPPARLLAPIGLGGLEEQADKAKVSAIA 1010

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            MV   +Q  TRKG R+  +   +     EA  FP
Sbjct: 1011 MVSEMRQVTTRKGDRMAVLQLEDLTGSCEAVVFP 1044


>gi|312796952|ref|YP_004029874.1| DNA polymerase III alpha subunit [Burkholderia rhizoxinica HKI 454]
 gi|312168727|emb|CBW75730.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia
            rhizoxinica HKI 454]
          Length = 1198

 Score = 1060 bits (2741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1042 (39%), Positives = 611/1042 (58%), Gaps = 36/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++ +++ A D Q A+A+TD  N F  + F + A A G
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDAVERAAEDGQGALALTDLANAFGLVRFYKAARAHG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI+G  + +   D+     +          ++LLV    GY  L EL+SR +L +Q +
Sbjct: 62   VKPIVGADVWVSNPDDRDKPAR----------LLLLVKDRRGYLNLCELLSRAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +   WL+    EGL+ L+G   G I  A    + Q A +    +  +F +  Y+ L
Sbjct: 112  GRAEVDCQWLETGLAEGLLALSGAQHGDIGIALAAGNVQAATRHAQRWAAIFPNAFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR R         Q V+LA   +LP+VAT+   F++ ED+ AH+  + ++   +++   R
Sbjct: 172  QRMRQPGVEAYVQQAVELAAQLKLPVVATHPVQFMTPEDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R + D Y   + +M  +F+D+P AL NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 232  AKRFSTDQYFFTQQQMGELFADIPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RL Q    A  +    Q Y++RL FE + I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSKTGLEQRLEQLFPDATQRNARRQTYQERLAFECDTIIKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ A+AL ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAFALGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQD RD VI+YV++KYG + V+QI TFG++ AKAA+RD+GR L + Y+  D + KLIP 
Sbjct: 408  FCQDGRDRVIQYVKSKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYNFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++ + +E    +  V +LLE++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPQLQERFDNEDEVRQLLELAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPGP+D 
Sbjct: 588  LAQVPLDDPASFTILKNANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREMVEYPDPRVEPILKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+S   A  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHRELFREGAAKNGLSAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+M+L MD+ +K+K   +D    ++ ++PP +N     F+   +    
Sbjct: 768  WLKVHHPAEFMAANMSLAMDDTDKVKILFEDCIANHLAVLPPDINQSAYRFEPVADAPGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A   +PF  L DFC RVD + +NRR +E+L+ AGA
Sbjct: 828  RSKTIRYGLGAIKGSGQNAIEEILRARESQPFSDLFDFCERVDRRIVNRRTIEALIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+    + A+    N       +F    G+   +  L          
Sbjct: 888  FDSLHENRAQLLASVPLAMEAAEQASANAL--QGGLFDMPDGSSGHQHELVDEPAWTEKR 945

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            + + E+  LGFY SGH  D YK  +R+   +   E      G +  +A ++ + + + T+
Sbjct: 946  KLQEEKAALGFYISGHLFDAYKDEVRRFVRQKIGEL---KEGRDKVIAGVITAMRTQMTQ 1002

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1003 RGK-MLVAVLDDGTGQCEVTVF 1023


>gi|149907538|ref|ZP_01896285.1| DNA polymerase III subunit alpha [Moritella sp. PE36]
 gi|149809208|gb|EDM69137.1| DNA polymerase III subunit alpha [Moritella sp. PE36]
          Length = 1159

 Score = 1059 bits (2740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1044 (38%), Positives = 594/1044 (56%), Gaps = 37/1044 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL +HS +S+++  + +  +  ++     PAIA+TD  N+ + ++F      AG++
Sbjct: 4    PRFIHLHLHSEFSMVDSLVRMKRLAPRLQELNMPAIALTDQTNMCALVKFYGAMQRAGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +        + +L    +GY  +  L+S+ Y        
Sbjct: 64   PIIGADFWV----------QSEEYPEEQFKLTVLAKDNKGYNNITVLISKAYSRGHVDGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E   EG+I+L+G  +G I +A    +  +A + L  ++  F D  Y+ L R
Sbjct: 114  AIIDKAWLAE-HAEGVILLSGARNGDIGKALLKGNDALARQCLTFYQAHFPDSYYLELIR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D        V  A  H+LP+VATN+ +FL  ++++AH++ +++     +  K RPR
Sbjct: 173  TGRQDEEAYLHMAVDFASQHQLPVVATNDVVFLHADEFDAHEIRVSIHDGYTLEDKRRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              + + YL++  EM  +F+D+PEAL N+VEIA+RC+  +++    LP F   E       
Sbjct: 233  LYSKEQYLRSEDEMCELFADIPEALANSVEIAKRCNATVRLGEYFLPNFPTGEL-----S 287

Query: 307  EENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              + L   +  GL  RL         +      Y  RL+ EL VI  M F GYFLIV +F
Sbjct: 288  TADFLVKVSEDGLVERLDFLFPDPAERERQRPAYEDRLEIELKVINDMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KLIP DP
Sbjct: 408  MDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPGDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + R  E    D  V  L+++++ LEG+ R+A  HA G+VI    ++   
Sbjct: 468  GMTL-AKAWDVEPRLDEMYQGDEEVRALVDMARILEGVIRNAGKHAGGVVISPTVITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-----LAQRGVKVDL 598
            P+Y D   + PVTQF+   +E+AGL+KFDFLGL+TLT++Q +LD      + Q   ++ +
Sbjct: 527  PLYCDDSGNNPVTQFDKNDVEEAGLVKFDFLGLRTLTIIQWALDMANPHLVKQGKKEIRI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I   D   + LL    T  +FQLES GM+  +  ++PD  ED+IALV+L+RPGP+ + 
Sbjct: 587  ESIDITDRRCFDLLQRSETTAVFQLESRGMKDLIRRLKPDSFEDMIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+E++        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREEVSYPDAQYQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM+KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMEKQRGTFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT WMKTHYP  F+AA M+ +MDN EK+     +  +  + ++PP VN     F V 
Sbjct: 767  VSYQTLWMKTHYPSYFMAAVMSADMDNTEKVVTLVDEVERMGLTLLPPDVNKGLFKFNVQ 826

Query: 832  DNRI-YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            ++    Y + AIKGVG      I+ A      F  L DFC+RV+ KK+++R++E L++AG
Sbjct: 827  EDHTIIYGIGAIKGVGEGPIDAIIAARESGGEFTDLFDFCNRVNLKKISKRIMEKLIYAG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            ALD  G  R  L  +L    K A            ++F          +           
Sbjct: 887  ALDKLGPHRAALHATLPEAMKAAAQHAMAEAYGQSDLFGILTTEPEEIESKFADVPEWPD 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             V  E E+  LG Y +GHP++ Y   +++      ++   T RG  +    +V+S Q K 
Sbjct: 947  KVWLEGERETLGLYLTGHPINQYIKEVKRYSTNRLKDVKPTERGKVVTAVGLVISAQVKV 1006

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T+KG+R+G +   + +      FF
Sbjct: 1007 TKKGTRMGILEIDDKSGRLSVMFF 1030


>gi|303228475|ref|ZP_07315306.1| putative DNA polymerase III subunit alpha [Veillonella atypica
            ACS-134-V-Col7a]
 gi|302516833|gb|EFL58744.1| putative DNA polymerase III subunit alpha [Veillonella atypica
            ACS-134-V-Col7a]
          Length = 1135

 Score = 1059 bits (2739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1032 (37%), Positives = 601/1032 (58%), Gaps = 27/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ +SLL+G   L +++ +    +QPA+AITD  N+++A+ F ++  A GI+P
Sbjct: 3    PFVHLHSHTEFSLLDGISRLPDMVRRAKELEQPALAITDHGNMYAAIYFYKECVAQGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +     L            +  ++LL  T EGY+ L+++VS+           
Sbjct: 63   IIGCEVYVTEGSRLDKPE--GRSRERLKHLILLAETMEGYRNLVKIVSKASTEG-FNYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R     L++  ++G+I L+    G + +    ++   A + +  + + F  D  ++ +Q 
Sbjct: 120  RADHDLLRQY-SKGIIALSACIQGEVPQYILQDNMDGARRAVEWYIETFGKDNFFLEIQN 178

Query: 189  HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +  R  QV+ QLA  + L +VA+N+  ++ ++D +A D+ + +      ++ DR +
Sbjct: 179  HGLPEELRAQQVLCQLADEYGLGIVASNDFHYVMKDDADAQDIRVCIQTGRRRAEVDRLK 238

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  YLK+  EM  +F  +P ALENTV+IA RC+         LP F   E +     
Sbjct: 239  FPNDEFYLKSGDEMAELFGHIPGALENTVKIADRCNVEFNFDEHHLPHFDVPEGE----T 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  LR      +           G  +++ ++RLD+EL+VI  M F  YFLIV D++++
Sbjct: 295  SKTYLRKVCEREIPRLY-------GDTSEELKKRLDYELDVIGTMGFEDYFLIVWDYVRY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++
Sbjct: 348  AREHDILVGPGRGSAAGSVVAYLLGITGLDPLQYDLLFERFLNPERVSMPDIDIDFCYEK 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E I YV  KYG  RV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+    
Sbjct: 408  RGEAIDYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELG-- 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            ++L+        +     DP+V  L +  QKLEG+ R++STHAAG+VI   PL   VP+ 
Sbjct: 466  ITLEKALKGKDLKALYDTDPNVKELFDFGQKLEGIARNSSTHAAGVVISADPLDDHVPVQ 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                    VTQ++   IE+ GL+K DFLGL+TLT++  +L  +   RG+ +DL  IP DD
Sbjct: 526  NSNEEGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
                 LLT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +V  + +
Sbjct: 585  KAACELLTKGDTSGVFQLESDGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFID 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK + 
Sbjct: 645  RRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKES 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  Q+E FI G+  NGI ++IA  +F+LL  FA YGFNKSH+AAYA I+YQTA++K HY
Sbjct: 705  VLKAQRESFIQGSINNGIEESIANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKVHY 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              EF+AA+MT  M N++K+  +    ++ N+Q++ P VN     F V  + I + L  IK
Sbjct: 765  FPEFMAATMTSFMQNMDKLTYYINACKKHNVQVLGPDVNHSLRSFAVQGDAIRFGLGGIK 824

Query: 844  GVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG       I E  A+  + S+ DFC RVDSK +N+R+LESL+  GA+D F  +R QLL
Sbjct: 825  NVGDNAIDRLIAEREANGLYTSITDFCRRVDSKVVNKRLLESLIRCGAMDGFEENRNQLL 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
               ++ Q      +K+      ++F        D I +      +   + ++E+   GFY
Sbjct: 885  HMYESAQAVGAKQQKDAAMGTMSLFGESTDDV-DMIPVPNLPDLSEDDKLKDEKDYTGFY 943

Query: 963  FSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             +GHPL  Y   L+ +  +    E+     G  I    ++  +  + T++G  +  +   
Sbjct: 944  ITGHPLQGYNKELKGLFELGQLLENPERFDGQTITFGGLIAERGDRPTKRGDVMSILRIE 1003

Query: 1022 EPAKEYEANFFP 1033
            + +   +   FP
Sbjct: 1004 DYSGSAQVVAFP 1015


>gi|42528286|ref|NP_973384.1| DNA polymerase III subunit alpha [Treponema denticola ATCC 35405]
 gi|41819556|gb|AAS13303.1| DNA polymerase III, alpha subunit [Treponema denticola ATCC 35405]
          Length = 1149

 Score = 1059 bits (2739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1037 (37%), Positives = 584/1037 (56%), Gaps = 28/1037 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS +SLL+GA S+  +  K     Q A+A+TD  N+F A+ F        I+P
Sbjct: 4    DFVHLHVHSDFSLLDGAASVKALAAKAEKLGQTALALTDHGNMFGAINFYNACKEKNIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  +  +   +   +          ++LL     GY+ L+ L S+ Y         
Sbjct: 64   IIGCEFYVAPESRFE--KKETPGGKKYYHLILLAKNETGYRNLMVLCSKGYTEGM-YYKP 120

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI    L +   EGLI L+   +G +         + AE  +  ++++F  +  ++ LQ 
Sbjct: 121  RIDDELLAQYA-EGLICLSACLAGELPVLLLNGEKEKAEAHVRKYREIFGAENYFIELQD 179

Query: 189  HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +  + S++ +++A    +PLV TN+  ++ ++DY A D+LM +    + +  +R +
Sbjct: 180  HGLKEEKKASKLLIEMARKVGVPLVLTNDIHYVEQKDYVAQDILMCIGMKKLRTDTNRMQ 239

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + Y K+  EM  +F + PEA+ NTV IA  C+  +    PILP +   E       
Sbjct: 240  FEGSEFYFKSGEEMAQLFPEYPEAILNTVRIAEMCNLEIPQPGPILPIYKIPED---FSS 296

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +E+ +R+ A  GL+ R             + + RL++EL+++ +M F GYFLIV DFI W
Sbjct: 297  KEDYIRHLAEEGLKKRYP-------VITDEIKNRLNYELDIVIKMDFVGYFLIVWDFINW 349

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N +PVGPGRGSGAGS+ AY+L ITDIDPL+++LLFERFLNP+R+SMPDFD+DFC +R
Sbjct: 350  AKNNGVPVGPGRGSGAGSILAYSLRITDIDPLKYNLLFERFLNPERVSMPDFDVDFCFER 409

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA-- 484
            R EVI YV+ KYG E V QIITFG+L+ KA ++DVGR L +P + V+ + KLIP  P   
Sbjct: 410  RQEVIEYVRQKYGDENVGQIITFGTLKPKAVVKDVGRVLNIPLADVNAITKLIPPKPLTD 469

Query: 485  --HPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                V+L+ A+      +E    D     L EIS  LEG  R++S HAAGIVIG   L+ 
Sbjct: 470  GIKEVTLKYAVDVVPELKEM-AEDSQYKELFEISIALEGRNRNSSLHAAGIVIGKTALTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDL 598
             VP+Y+D ++    TQF M  IE  GL+K DFLGLKTLTL++ + D + +R     K  +
Sbjct: 529  YVPLYKDSKTGKVATQFTMDLIENCGLVKMDFLGLKTLTLIKHTEDLIHKRGGEWRKFSI 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I + D ET+ +L+      +FQ ES GM+  L+  +P  +ED+IAL +LYRPGP+D I
Sbjct: 589  GDIDYSDAETFKMLSEGKAAAVFQFESQGMQNILKRAKPSKMEDLIALNALYRPGPMDYI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   K    KI    P ++ +L ET GVI+YQEQVMQ+AQ ++GYSL +AD+LRRAMG
Sbjct: 649  NQFIESKFDNSKIKYPDPCLEDILSETYGVIVYQEQVMQVAQRIAGYSLGQADILRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  E M  +KE+FI GA + G S+  A  IFE+L  FA YGFNKSHAAAY+V+++QTA+
Sbjct: 709  KKKIEVMKTEKEKFIKGAQEKGFSREDADRIFEILIPFAGYGFNKSHAAAYSVLAFQTAY 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YY 837
            +K H+P EF+AA++T E+ + +K+ ++  +A +  ++I+PP VN     F V  +    +
Sbjct: 769  LKAHFPAEFMAANLTNEITSTDKLPEYIAEAEKMGLKILPPHVNLSDPYFSVSSDGNIIF 828

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L  IKGVG   A  ++E    +  + S  DF  R D    N+R LE ++  G  D  G 
Sbjct: 829  GLLGIKGVGMQAAHELVEEREKNGRYKSFIDFLERNDLHTQNKRNLEVMIKTGCFDGLGQ 888

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R  L+ ++D    YA   ++N +    ++F             EK        +   E+
Sbjct: 889  ERSTLMVNMDGAVAYASQKKENESTGQGSLFEGSGIKEFSDFVFEKIEEFPKKEKLRLEK 948

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             ++GFY SGHPLD Y+ ++                     L  M+   +Q +T+KG+ +G
Sbjct: 949  ELMGFYISGHPLDEYRKVIDNSATLDISHLARATSKKRYVLVGMLTGVRQHQTKKGAMMG 1008

Query: 1017 WVTFSEPAKEYEANFFP 1033
            + TF +     +  FFP
Sbjct: 1009 FGTFEDLNGTLDLVFFP 1025


>gi|325475361|gb|EGC78546.1| DNA polymerase III [Treponema denticola F0402]
          Length = 1149

 Score = 1059 bits (2739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1037 (38%), Positives = 584/1037 (56%), Gaps = 28/1037 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS +SLL+GA S+  +  K     Q A+A+TD  N+F A+ F        I+P
Sbjct: 4    DFVHLHVHSDFSLLDGAASVKALAAKAEKLGQTALALTDHGNMFGAINFYNACKEKNIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  +  +   +   +          ++LL     GY+ L+ L S+ Y         
Sbjct: 64   IIGCEFYVAPESRFE--KKETPGGKKYYHLILLAKNETGYRNLMVLCSKGYTEGM-YYKP 120

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI    L +   EGLI L+   +G +         + AE  +  ++++F  +  ++ LQ 
Sbjct: 121  RIDDELLTQYA-EGLICLSACLAGELPVLLLNGEKEKAEAHVRKYREIFGAENYFIELQD 179

Query: 189  HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +  + S++ +++A    +PLV TN+  ++ ++DY A D+LM +    + +  +R +
Sbjct: 180  HGLKEEKKASKLLIEMARKVGVPLVLTNDIHYVEQKDYVAQDILMCIGMKKLRTDTNRMQ 239

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + Y K+  EM  +F + PE + NTV IA  C+  +    PILP +   E       
Sbjct: 240  FEGSEFYFKSGEEMAQLFPEYPETILNTVRIAEMCNLEIPQPGPILPIYKIPED---FSS 296

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +E+ +R+ A  GL+ R             + + RL++EL+++ +M F GYFLIV DFI W
Sbjct: 297  KEDYIRHLAEEGLKKRYP-------VITDEIKNRLNYELDIVIKMDFVGYFLIVWDFINW 349

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N +PVGPGRGSGAGS+ AY+L ITDIDPL+++LLFERFLNP+R+SMPDFD+DFC +R
Sbjct: 350  AKNNGVPVGPGRGSGAGSILAYSLRITDIDPLKYNLLFERFLNPERVSMPDFDVDFCFER 409

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA-- 484
            R EVI YV+ KYG E V QIITFG+L+ KA ++DVGR L +P + V+ + KLIP  P   
Sbjct: 410  RQEVIEYVRQKYGDENVGQIITFGTLKPKAVVKDVGRVLNIPLADVNAITKLIPPKPLTD 469

Query: 485  --HPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                V+L+ A+      +E    DP    L EIS  LEG  R++S HAAGIVIG   L+ 
Sbjct: 470  GIKEVTLKYAVDVVPELKEM-AEDPQYKELFEISIALEGRNRNSSLHAAGIVIGKTALTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDL 598
             VP+Y+D ++    TQF M  IE  GL+K DFLGLKTLTL++ + D + +R     K  +
Sbjct: 529  YVPLYKDSKTGKVATQFTMDLIENCGLVKMDFLGLKTLTLIKHTEDLIHKRGGEWRKFSI 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I + D ET+ +L+      +FQ ES GM+  L+  +P  +ED+IAL +LYRPGP+D I
Sbjct: 589  GDIDYSDAETFKMLSEGLAAAVFQFESQGMQNILKRAKPSKMEDLIALNALYRPGPMDYI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   K    KI    P ++ +L ET GVI+YQEQVMQ+AQ ++GYSL +AD+LRRAMG
Sbjct: 649  NQFIESKFDNSKIKYPDPCLEDILSETYGVIVYQEQVMQVAQRIAGYSLGQADILRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  E M  +KE+FI GA + G S+  A  IFE+L  FA YGFNKSHAAAY+V+++QTA+
Sbjct: 709  KKKIEVMKTEKEKFIKGAQEKGFSREDADRIFEILIPFAGYGFNKSHAAAYSVLAFQTAY 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YY 837
            +K H+P EF+AA++T E+ + +K+ ++  +A +  ++I+PP VN     F V  +    +
Sbjct: 769  LKAHFPAEFMAANLTNEITSTDKLPEYIAEAEKMGLKILPPHVNLSDPYFSVSSDGNIIF 828

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L  IKGVG   A  ++E    +  + S  DF  R D    N+R LE ++  G  D  G 
Sbjct: 829  GLLGIKGVGMQAAHELVEEREKNGRYKSFIDFLERNDLHTQNKRNLEVMIKTGCFDGLGQ 888

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R  L+ +LD    YA   ++N +    ++F             EK        +   E+
Sbjct: 889  ERSTLMVNLDGAVAYASQKKENESTGQGSLFEGSGIKEFSDFVFEKIEEFPKKEKLRLEK 948

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             ++GFY SGHPLD Y+ ++                     L  M+   +Q +T+KG+ +G
Sbjct: 949  ELMGFYISGHPLDEYRKVIDNSATLDISHLARATSKKRYVLVGMLTGVRQHQTKKGAMMG 1008

Query: 1017 WVTFSEPAKEYEANFFP 1033
            + TF +     +  FFP
Sbjct: 1009 FGTFEDLNGTLDLVFFP 1025


>gi|37523503|ref|NP_926880.1| DNA polymerase III subunit alpha [Gloeobacter violaceus PCC 7421]
 gi|35214507|dbj|BAC91875.1| DNA polymerase III alpha subunit [Gloeobacter violaceus PCC 7421]
          Length = 1159

 Score = 1059 bits (2739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1051 (36%), Positives = 598/1051 (56%), Gaps = 45/1051 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V+L  HS YSLL+GA  + +++++    + PAIAITD   ++ A+E  +K  AAG++PI
Sbjct: 3    YVNLHTHSDYSLLDGASQVPDLIERAKGLEMPAIAITDHGVMYGAIELIKKCRAAGLKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ-- 127
            +G +  +   D    + + +         +LL     GY+ L++LV+  +L   QGK   
Sbjct: 63   VGTEGYVINGDIRDKSRRYRR-----YHQILLAKNLTGYKNLVKLVTISHLDGVQGKGIF 117

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +    L +   EG+I  +    G I +       + A +    +K LFGD  Y+ +
Sbjct: 118  SRPCMNKEMLVQYH-EGIICTSACLGGEIPQLILAGQFEQARRTTQWYKDLFGDDFYLEI 176

Query: 187  QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    DR     VV L     + ++ATN+S F S ED +AHD L+ +    +V +++R
Sbjct: 177  QDHGQREDRVVNVAVVHLGRELGIKVIATNDSHFTSCEDVDAHDALLCIQTGKLVVEENR 236

Query: 246  PRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQ--VHAPILPRFIE 297
             R T   +LK+  +M  +F D      + +AL  T+EIA +     +  +    LPRF  
Sbjct: 237  MRYTGTEFLKSAEQMAGMFRDHLSDEVIAQALTTTLEIAEKVEKYDRELLGDSRLPRFPI 296

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                      E+ L      G+  R           A DYR+RL +EL +I +M F+ YF
Sbjct: 297  PHG----HTAESYLEQVTWEGMRERFG------SEIAPDYRERLKYELGIIEQMGFATYF 346

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+V D+I++A+ + I VGPGRGS AGS+ AYAL IT+IDP+R++LLFERFLNP+R SMPD
Sbjct: 347  LVVWDYIKYARDHGIAVGPGRGSAAGSLVAYALRITNIDPVRYNLLFERFLNPERKSMPD 406

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D DFC +RRDE+IRYV  KYG + VAQIITF  L +KA L+DV R L + YS+ D+L K
Sbjct: 407  IDTDFCIERRDELIRYVTEKYGEQYVAQIITFNRLTSKAVLKDVARVLDISYSEADKLAK 466

Query: 478  LIPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            LIP     PV L+ +  +      F+++   D  V + +E++ ++EG  +    HAAG+V
Sbjct: 467  LIPVVRGKPVPLKKMISEETPAPEFKQSYEGDERVRKWVELAMRIEGTNKTFGVHAAGVV 526

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
            I   PL +LVP+ R+      +TQ+ M+ I   GL+K DFLGL+ LT++ ++ + + + R
Sbjct: 527  ISSVPLDELVPLQRN-NDGQVITQYYMEDIADLGLLKMDFLGLRNLTMIHRAQELIERYR 585

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            GV++DL  +P +D  TY LL      GIFQLESSGM+  +  ++P  IEDI ++++LYRP
Sbjct: 586  GVRIDLDNLPLEDSGTYALLGKADLEGIFQLESSGMKAVVRDLRPSNIEDISSILALYRP 645

Query: 653  GPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+D   I  + NRK+G++KI  +HPL++P+LKET GV+ YQEQ+M++AQ L GY+L +A
Sbjct: 646  GPLDAGLIPEFINRKHGRKKIEYLHPLLEPILKETYGVLCYQEQIMKVAQELGGYTLGQA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK +EEM+K +  F+ G++KNG+   +A  +FE +  FA+Y FNKSH+AAY 
Sbjct: 706  DLLRRAMGKKKREEMEKHRSIFVDGSAKNGVPSRVADELFEQMVVFAEYCFNKSHSAAYG 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             +++QTA++K HYPVE++AA ++    + +K++K+        I+I PP +N    DF  
Sbjct: 766  YVTFQTAYLKAHYPVEYMAALLSSVKGDQDKVQKYIASCMGMGIEIEPPDINRSGFDFTP 825

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +  I + L A+K VG    + +++A  +  PF +L + C RVD + +N+R LESL+ AG
Sbjct: 826  QEKSILFGLGAVKNVGEGAIQALLDARDSQGPFKNLANLCDRVDMRVINKRALESLIKAG 885

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-------DKITLEK 942
            A D F  +R QL+  ++ +  +AQ   ++R     N+F    G             +   
Sbjct: 886  AFDAFSSNRGQLIADMEKVVDWAQDRARDRALGQFNLFDALSGGGDRNPTGYQSAPSAPP 945

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                  + + + E+ +LGFY S HPL   +   R +      +       + +   A+V 
Sbjct: 946  TPDLPPADKLKFERELLGFYISDHPLKAVRESARLLAPVNLADLADCRAESTVSAIALVR 1005

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +   T+KG R+  V   +     EA  FP
Sbjct: 1006 EVKNVVTKKGDRMAIVQIEDLTGSTEAVVFP 1036


>gi|78212689|ref|YP_381468.1| DNA polymerase III subunit alpha [Synechococcus sp. CC9605]
 gi|78197148|gb|ABB34913.1| DNA polymerase III, alpha subunit [Synechococcus sp. CC9605]
          Length = 1172

 Score = 1059 bits (2738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1053 (37%), Positives = 587/1053 (55%), Gaps = 41/1053 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++      PAIA+TD   ++ A+E  +      ++P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPAMVEEAKQLGMPAIALTDHGVMYGAIELLKLCQGTDLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          + +  +     +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPKKEKRY----HLVVLAKNATGYRNLVKLTSISHLRGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L++  +EGLI+ T    G I +A       VA K    ++++FGD  Y+ 
Sbjct: 118  FSRACIDKELLKQ-HSEGLIIATACLGGEIAQAILRGRPDVARKVAAWYQEVFGDDYYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V++A    + +VATN++ +LS++D EAHD L+ V    +++ + 
Sbjct: 177  IQDHGSPEDRIVNVEIVKIAKELGIQIVATNDAHYLSKQDVEAHDALLCVLTGKLITDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   Y+K   EM  +F D        EA+ NTV++A +      +    +PRF   
Sbjct: 237  RLRYTGTEYIKTEEEMGLLFGDHLEPEVVQEAIANTVKVAEKVEPYDILGRYQMPRFPIP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E         + LR     GL  RL      +     DY +R+  EL ++ +M F  YFL
Sbjct: 297  EG----HTPVSYLREVTEQGLRDRLE--LSPEASLPDDYAERMAHELKIMEQMGFPTYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A++ NIPVGPGRGS AGS+ AY L IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 351  VVWDYIRFAREQNIPVGPGRGSAAGSLVAYCLGITNIDPITNCLLFERFLNPERKSMPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KL
Sbjct: 411  DTDFCIERRGEVIDYVTERYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKL 470

Query: 479  IPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L+A+  +      FRE   ADP+V R ++++ ++EG  +    HAAG+VI
Sbjct: 471  IPVVRGKPAKLKAMIGEESPNPEFREKYEADPTVKRWVDMAMRIEGTNKTFGVHAAGVVI 530

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRG 593
               PL +LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT+++K+L+ +    G
Sbjct: 531  AADPLDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIEKTLELVEVSSG 589

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +VD   +P  D  T+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRPG
Sbjct: 590  TRVDPDKLPPQDEATFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPG 649

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRK+G+E I   H +++P+L ET G+++YQEQ+M+IAQ L+GYSL +AD
Sbjct: 650  PLDAGLIPKFINRKHGREAIDFAHAILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM K +  F+ GA + G+ + +A  +F+ +  FA+Y FNKSH+ AY  
Sbjct: 710  LLRRAMGKKKVSEMQKHRGIFVQGAGERGVDEKVADELFDQMVLFAEYCFNKSHSTAYGA 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K HYPV ++AA +T+     +K++++  +     I++MPP VN    DF   
Sbjct: 770  VTYQTAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDVNASLTDFTPN 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             +RI + L+A++ +G    R ++ A  +D PF SL D C R+ S  LNRR LESLV  GA
Sbjct: 830  GDRILFGLSAVRNLGDGAIRQLIAARDSDGPFRSLADLCDRIPSSVLNRRGLESLVHCGA 889

Query: 891  LDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--------KGTFSDKITL 940
            LD      +R QL+  LD +  +A    K+R +   N+F               S     
Sbjct: 890  LDAMDPQANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAPAADADGPADLSHAPKA 949

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
               +    + +   E+ ++GFY S HPL    P  + +   G            +   AM
Sbjct: 950  APVTDYPPTEKLRLEKDLVGFYLSDHPLKQLTPSSKLLAPIGLGSLEEQPDKAKVSAIAM 1009

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V   +Q  TRKG R+  +   +     EA  FP
Sbjct: 1010 VAEMRQVTTRKGDRMAILQLEDLTGSCEAVVFP 1042


>gi|322382903|ref|ZP_08056738.1| DNA polymerase III DnaE-like protein [Paenibacillus larvae subsp.
            larvae B-3650]
 gi|321153172|gb|EFX45627.1| DNA polymerase III DnaE-like protein [Paenibacillus larvae subsp.
            larvae B-3650]
          Length = 1210

 Score = 1059 bits (2738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1050 (35%), Positives = 595/1050 (56%), Gaps = 44/1050 (4%)

Query: 17   HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
            HS YSLL+GA  ++++ ++ A     A+A+TD   ++  + F +     GI+PIIGC++ 
Sbjct: 2    HSEYSLLDGAARIHDLTERAAELGMSALALTDHGVMYGTIAFYKACKQRGIKPIIGCEVY 61

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
                   +  N+ + P   +  ++LL     GY+ L++L S  +L        RI    L
Sbjct: 62   FTTGSIRQKGNRQEQP---IYHLILLAKNNTGYRNLMKLCSIGHLEG-FHYKPRIDAEHL 117

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR 196
                +EGLI L+      + +    +  + A K    ++ +FG+  Y+ +Q H   ++ +
Sbjct: 118  A-AHSEGLICLSACLGSEVSQHLLHDRKEDARKAAERYRSIFGEDFYLEIQDHGMMEQKK 176

Query: 197  E-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYL 254
                +++L+    +PL+ATN+  ++ E D+E  DVL+ +     V  +DR    T   YL
Sbjct: 177  VMHSMIELSRETGIPLIATNDVHYVREPDHEVQDVLICIGTGKTVEDEDRLKMGTSQLYL 236

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
            K R  M ++F+ +PEA+ NT ++A +C   +++   ILP F   E           L+  
Sbjct: 237  KTREAMAALFAHVPEAVLNTEKVAAQCQVEIELGHSILPSF---EPIPESLTAAEYLKQL 293

Query: 315  AVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
             + G+  R     +         +   Q+L +EL+VI  M FS YFLIV DFI++A +  
Sbjct: 294  CLEGISGRYGTRQEWNDPSSDFRKQVEQKLYYELDVIESMGFSDYFLIVWDFIRYAHEQG 353

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I  GPGRGS AGS+ AYAL ITD+DP+ ++LLFERFLNP+R++MPD DIDF  +RRDEVI
Sbjct: 354  IMTGPGRGSSAGSLVAYALNITDVDPIEYNLLFERFLNPERITMPDIDIDFNDERRDEVI 413

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             YV  KYG ERVAQIITFG++ AKAA+RDVGR L +PY++VD+  KLIPN     +   A
Sbjct: 414  DYVVRKYGKERVAQIITFGTMAAKAAVRDVGRVLNLPYNEVDKAAKLIPNHLGMTID-HA 472

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
            +  +S  RE     P    LL +++++EG+ RHASTHAAG+VI   PL+  VP+      
Sbjct: 473  LEVNSDLRELAEKQPKTAELLNMAKRVEGMPRHASTHAAGVVISRDPLTDYVPLQEGT-E 531

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYH 610
              P+TQ++M+ +E  GL+K DFLGL+TL++++++L ++  Q G  VD +     D +TY 
Sbjct: 532  QTPLTQYSMEHLESIGLLKIDFLGLRTLSIIERTLAWIKEQEGKLVDWTQTDKSDPKTYE 591

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T G+FQLES GMR+ L+ ++P   EDII++++LYRPGP++ I  Y   K+ + +
Sbjct: 592  LLSRGETTGVFQLESPGMRRVLKELKPSRFEDIISVLALYRPGPMEFIPQYIACKHKQTE 651

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             V  HP ++ +LK+T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E +D+Q+ 
Sbjct: 652  PVYPHPSLETILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREVLDEQRS 711

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ G+   G +   A ++++++ +FADYG+ ++HA AY V+++QTA++K HYP  F+A+
Sbjct: 712  HFVEGSLGQGFTAEEANHVYDMIVRFADYGYPRAHATAYGVLAFQTAYLKAHYPRHFMAS 771

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK--------------------- 829
             +T    N  K+ ++  + R+  + ++PP +N   V F                      
Sbjct: 772  MLTAVTGNQRKMAEYVDECRRMKLDVLPPDINESGVLFTPVASPGFGTEPARYAGEPAEE 831

Query: 830  ------VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                    +  I + LAAIK VG +    +++    + F SL DFC RVD +  N+RV+E
Sbjct: 832  GMADKIPVNGAIRFGLAAIKNVGASAIEAVLKERRKETFTSLLDFCRRVDLRICNKRVIE 891

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            SL+ AGA D     R QL+  LD+  + A    K + +   ++F   +     ++ +   
Sbjct: 892  SLIQAGAFDTLPGHRAQLVAMLDDTAEAALKWRKEKDDLQLHLFGFVEEPHW-EVEVPDV 950

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
             +     + + E+ ++G Y SGHPLD ++ +L ++      +       + + +A MV S
Sbjct: 951  PMLTKLQQLDYERELIGMYLSGHPLDAHEDLLGRLEADPLYQLQEYPDHSEVVVAGMVAS 1010

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +   T++G  + ++   +   + E   FP
Sbjct: 1011 SKTIVTKRGEPMAFMELEDRIAKVEIVLFP 1040


>gi|86159864|ref|YP_466649.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-C]
 gi|85776375|gb|ABC83212.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-C]
          Length = 1210

 Score = 1058 bits (2737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/1083 (37%), Positives = 613/1083 (56%), Gaps = 70/1083 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL +H+ YSLL+GA+ + ++L  + A    ++A+TD  NLF A++F +KA  AG++
Sbjct: 2    PDFVHLHLHTLYSLLDGAIRIKDLLKTVKAKGMSSVAVTDHGNLFGAVDFYKKAKEAGVK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G +  +   D  +     +        ++LL   AEG+  L  L S+ +        
Sbjct: 62   PILGMEAYVA-GDKGRTDRSERIGR----HLILLAKNAEGWANLRYLSSKAFTEG-FYYD 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
             RI    L++  ++GL+ LT   +G + R         A +    ++ +F     ++ +Q
Sbjct: 116  PRIDKQLLRD-HSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLEVQ 174

Query: 188  RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   ++    +++ QL     +PLV T ++ ++S ++ +AH+VLM +A +       R 
Sbjct: 175  SNGMREQLDVNAKLAQLGRDEGIPLVGTADAHYVSRQEAKAHEVLMCIASNKTFQDPKRL 234

Query: 247  RVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R   D        EM +   D  EAL+NT+ IA  C+  L +    LP F   E      
Sbjct: 235  RHDTDGLFVAGPDEMAAALPDFREALDNTLRIAEMCNVELPLGKTFLPSFTLPEGM---- 290

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E++ +   A  GL+ R  +      +    YRQRL+ EL VI +M F GYFLIV DFI 
Sbjct: 291  SEDDYIVKLAREGLDRRFREIDGKYPHDRDLYRQRLEMELGVIKKMGFPGYFLIVQDFIN 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+++IPVGPGRGSGAGS+ A++L ITD+DPLR++LLFERFLNP+R+SMPDFD+DFCQ+
Sbjct: 351  WAKEHHIPVGPGRGSGAGSIVAWSLRITDLDPLRWNLLFERFLNPERVSMPDFDVDFCQN 410

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PA 484
            RRDEVI+YV+ KYG + V QIITFGSL+A++ +RDV R + +P+++ DR+ KL+P+    
Sbjct: 411  RRDEVIQYVRGKYGQDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDRIAKLVPDPVQG 470

Query: 485  HPVSLQAI-------ADDSRFREARLADPSV---------------DRLLEISQKLEGLY 522
                L+ +         + R +E       +                 LL+I+  LEGL 
Sbjct: 471  KTPPLKELVFGSDKMPAEPRLKELYDKPTVISQWVDDKGVQNKVTTKDLLDIAMSLEGLN 530

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R A  HAAG+VI D+PL + VP Y+D +S++ V+QF  + +E AGL+KFDFLGLKTLT++
Sbjct: 531  RQAGLHAAGVVIADKPLWEYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKTLTVI 590

Query: 583  QKSLDFLAQRGVKVDL---SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
              +L  + +   ++     S IP DD   Y L++   T G+FQ+ESSG  + +  M+P  
Sbjct: 591  DDALRMVKRNHPEMKDFAASDIPIDDPAVYELISRGDTGGVFQMESSGFTEMVVKMKPSR 650

Query: 640  IEDIIALVSLYRPGPID--------NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
             ED+IA  +LYRPGP+D         + VY +RK+G+EK+   HP ++ +L+ T GVI+Y
Sbjct: 651  FEDVIAAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVQYPHPSLEKVLEPTYGVIVY 710

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQI+Q+L+GYSL +AD+LRRAMGKK  E M K++  F++GA  NG+   +A  IF+
Sbjct: 711  QEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVANGVDDKVAGGIFD 770

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            L+ KFA YGFNKSH+AAY +++ QTAW+K HYPVEF+AA ++ E  N +K+     +AR 
Sbjct: 771  LMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHISEARA 830

Query: 812  FNIQIMPPSVNTPCVDFKV----------GDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
              ++++PP VN     F               RI + L A++GVG +  + I+EA A  P
Sbjct: 831  SQLEVLPPDVNESDAAFGAFPPGAESPKGSRGRIRFGLGAVRGVGDSAVQAIVEARASGP 890

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F SL D   RVDSKK+N++VLE+LV +GALD  G  R QL   +D         + +R +
Sbjct: 891  FKSLFDLAGRVDSKKINKKVLEALVKSGALDFEGVPRWQLYFGIDAAIAAGASAQADRAS 950

Query: 922  KHENIFAHEKGTFS-----------DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
               ++F     + +           D +           VR   E+  LGFY +GHPL  
Sbjct: 951  GQASLFGALTPSAATEAKPRYPRPGDAVGEVNVEEWPERVRLAFEKEALGFYLTGHPLMG 1010

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEA 1029
            Y+  +R+              G+ + +  +V S +++  + KG+R G++T  +     E 
Sbjct: 1011 YEREVRRYASSTCAAVAHKRHGDKVTVVGVVASLRERMNKEKGTRFGFLTLEDLTGTTEV 1070

Query: 1030 NFF 1032
              +
Sbjct: 1071 ICW 1073


>gi|33151745|ref|NP_873098.1| DNA polymerase III subunit alpha [Haemophilus ducreyi 35000HP]
 gi|33147966|gb|AAP95487.1| DNA polymerase III alpha subunit [Haemophilus ducreyi 35000HP]
          Length = 1158

 Score = 1058 bits (2737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1044 (40%), Positives = 613/1044 (58%), Gaps = 38/1044 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S++ G   +  ++   AA Q  A+A+TD +N    ++F  ++  AG++
Sbjct: 4    PRFVHLKVHSDFSMINGLAKVKALVKTAAAKQMAAMALTDFSNFCGLVKFYGESLTAGLK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG  + +          +       +  + LL    +GY  +  L+SR Y     +  
Sbjct: 64   PIIGADIYV----------RSDPTSEDIFELTLLAKNNQGYHNITVLLSRAYQQGYVEF- 112

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  +WL E+  EG+I+L+GG SG + +A    + Q A   +  +++ F D  Y++L R
Sbjct: 113  PIVEKAWLAEL-NEGIIVLSGGRSGDVGKALLKENEQEAATLVAFYQQYFADHYYLSLCR 171

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D  R   Q VQ A  ++LPLVA N+ +FL E+D++AH++ +A+  S  +    RP+
Sbjct: 172  TGRSDEERYLQQAVQFAKKYQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPQ 231

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  Y ++  EM ++F+DLP+AL N+++IA RC+  +++    LP F   E       
Sbjct: 232  KYSPQQYFRSEEEMCALFADLPQALMNSIQIAMRCNVTIRLGEYFLPNFPTGEL-----S 286

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RLA     A  +      Y +RL  EL+VI +M F GYFLIV +F
Sbjct: 287  TEDFLIKKSQEGLEERLAFLFPDAETRKNKRSVYDERLQVELDVINQMGFPGYFLIVMEF 346

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL+F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 347  IQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLQFDLLFERFLNPERISMPDFDVDFC 406

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KLIP DP
Sbjct: 407  MDGRDHVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIPADP 466

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 467  GMTL-AKAFEAEPKLPELYNADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFS 525

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDL 598
            P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR        + +
Sbjct: 526  PLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLTREGKPPIRI 585

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  ++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+++ 
Sbjct: 586  ENIPLDDKPSFKLLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESG 645

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G E++        H  + P+L+ T G+I+YQEQVMQIAQ L+GY+L  AD
Sbjct: 646  MVQNFIDRKHGIEEVSYPDAQYQHECLKPILEPTYGIIVYQEQVMQIAQELAGYTLGSAD 705

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM  Q++ F  GA + GI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 706  LLRRAMGKKKPEEMAAQRDIFEKGAIEKGIDGQLAIKIFDLVEKFAGYGFNKSHSAAYAL 765

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT EMDN +KI     +     + ++PP VN+    F V 
Sbjct: 766  VSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECINMGLTVVPPDVNSGKHRFSVN 825

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +     Y L AIKGVG      I+EA      F  L D  +RVD KK+NRR  ESL+ +G
Sbjct: 826  EKGQIVYGLGAIKGVGEGPIEAILEARNKGGIFKDLFDLTARVDLKKINRRTFESLIMSG 885

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948
            A D  G  R  L+++L++  K +    K       ++F     T    +         + 
Sbjct: 886  AFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEQVQKAYANTPKWSE 945

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
                E E+  LG Y SGHP+  +   L         E   T RG  + +A ++V+ +   
Sbjct: 946  QAVLEGERTTLGLYLSGHPIGRFLKELAHYAPTRLNELQPTRRGQMVTVAGIIVASRIAV 1005

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++GSR+G  T  + A + +   F
Sbjct: 1006 TKRGSRLGIATLEDRAGKIDITLF 1029


>gi|254560015|ref|YP_003067110.1| DNA polymerase III subunit alpha [Methylobacterium extorquens DM4]
 gi|254267293|emb|CAX23125.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens DM4]
          Length = 1173

 Score = 1058 bits (2737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 521/1060 (49%), Positives = 711/1060 (67%), Gaps = 34/1060 (3%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +T+ L++   F+HL VHSSYSLLEG +   +++   AAD+QPA+A+TDTNNLF ALEFS+
Sbjct: 1    MTRVLKEV-GFIHLHVHSSYSLLEGGVKAGDLVKAAAADRQPALALTDTNNLFGALEFSE 59

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AGIQPI G QL I  +         + P     +IVLL     GY  L+ L SR +
Sbjct: 60   YAAKAGIQPIAGLQLTICFE---APDPMARLPQAGCANIVLLAQDETGYGNLLRLGSRAH 116

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-G 179
                   +  + +S L E   EGLI LTGG SGP+D +        A +RL   K  F  
Sbjct: 117  FDGPLGAAPNLAVSAL-EGNVEGLIGLTGGLSGPLDTSLRAGRVDQAARRLEILKGAFGE 175

Query: 180  DRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            + LYV +QRH   D R  E ++++LA T+ L +VATN   F    DY+AHD L+A+A   
Sbjct: 176  EHLYVEIQRHGLDDERAVERELLRLADTNGLGIVATNEPFFAKPGDYDAHDALLAIAEGR 235

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI-- 296
            +VS + R R+TP H    R+ M+ +F DLP+AL  +VEIA RCS+  +   PILP F   
Sbjct: 236  LVSDERRRRLTPRHAFTTRAAMMELFRDLPDALSASVEIAMRCSYRARTRKPILPNFASV 295

Query: 297  ----EKECDDIQKE------------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
                     D   E            E  EL  +A AGL++RL Q   A G+  +DYR R
Sbjct: 296  AAGEAPPMADALAEAAQTPVQAVAADEPTELCRQAEAGLKLRLKQHGTAPGFTEEDYRAR 355

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L FEL+VI +MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF
Sbjct: 356  LKFELDVIVKMKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRF 415

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNP+R+SMPDFDIDFC + R+ VIRYVQ +YG  +V QIITFG+L A+  LRD
Sbjct: 416  GLLFERFLNPERVSMPDFDIDFCVEGRERVIRYVQQRYGERQVGQIITFGTLLARGVLRD 475

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLE 519
            VGR L+MPY QVD+L KL+P +PA+PV+L QAI  + + ++A   +P V RL+EIS+KLE
Sbjct: 476  VGRVLEMPYGQVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAIEEEPIVARLIEISKKLE 535

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL+RHASTHAAG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTL
Sbjct: 536  GLHRHASTHAAGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTL 595

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            T+L+   D L QRG++VDL+ IP DD +TY  +    T+ +FQ+ES+GMR+AL  MQ D 
Sbjct: 596  TMLRCCTDLLKQRGIEVDLAQIPLDDKKTYEPMGRGETVAVFQVESAGMRKALCEMQADR 655

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGK----EKIVSIHPLIDPMLKETQGVIIYQEQV 695
            +EDIIALV+LYRPGP+ NI VY  RK G+    E     HP+++P+LKET G+I+YQEQV
Sbjct: 656  LEDIIALVALYRPGPMANIPVYCERKLGRDAGNEASWYSHPMLEPILKETFGIIVYQEQV 715

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M++A++L+GY+L EAD+LRRAMGKKIK EMD Q++RF+ G ++NG++K  A  IF+LLAK
Sbjct: 716  MEVAKVLAGYTLGEADMLRRAMGKKIKAEMDAQRDRFVKGCTENGLTKAKADEIFDLLAK 775

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FADYGFNKSHAAAYA+++YQTA++K ++PVEFLAA+MTL++DN +K+ +F QDA++  I 
Sbjct: 776  FADYGFNKSHAAAYALVTYQTAYLKANHPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKIT 835

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            + PPSVNT  V F V + RI Y+LAAIKGVG +    I+ A  D PF  L  F  R++ +
Sbjct: 836  VEPPSVNTSGVVFDVREGRILYALAAIKGVGRSAVESIVAARGDTPFKDLACFARRLNPR 895

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
             +N+R LE+L+ AGALDC    R +   +++ + K AQ   +  T+   ++F     +  
Sbjct: 896  HVNKRTLENLIAAGALDCIEPDRARAWAAVEPMMKMAQGAAEAETSGITDMFGGV-ASVD 954

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
              + +        + + + E   +GF+ SGHPLD Y PIL K+ ++ + +    +R    
Sbjct: 955  VALRIPPHEFWTHTDKLKRECDAIGFFLSGHPLDEYGPILEKLRVQSWADFCRAVRAGTA 1014

Query: 996  ---RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               R+AA V+ + +++T+ G+++G V  S+    +EA  F
Sbjct: 1015 SVGRIAASVLDRSERRTKSGNKLGIVILSDQTGHFEAIIF 1054


>gi|303231851|ref|ZP_07318562.1| putative DNA polymerase III subunit alpha [Veillonella atypica
            ACS-049-V-Sch6]
 gi|302513458|gb|EFL55489.1| putative DNA polymerase III subunit alpha [Veillonella atypica
            ACS-049-V-Sch6]
          Length = 1135

 Score = 1058 bits (2737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1032 (37%), Positives = 602/1032 (58%), Gaps = 27/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ +SLL+G   L +++ +    +QPA+AITD  N+++A+ F ++  A GI+P
Sbjct: 3    PFVHLHSHTEFSLLDGISRLPDMVRRAKELEQPALAITDHGNMYAAIYFYKECVAQGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +     L            +  ++LL  T EGY+ L+++VS+           
Sbjct: 63   IIGCEVYVTEGSRLDKPE--GRSRERLKHLILLAETMEGYRNLVKIVSKASTEG-FNYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R     L++  ++G+I L+    G + +    ++   A + +  + + F  D  ++ +Q 
Sbjct: 120  RADHDLLRQY-SKGIIALSACIQGEVPQYILQDNMDGARRAVEWYIETFGKDNFFLEIQN 178

Query: 189  HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +  R  QV+ QLA  + L +VA+N+  ++ ++D +A D+ + +      ++ DR +
Sbjct: 179  HGLPEELRAQQVLCQLADEYGLGIVASNDFHYVMKDDADAQDIRVCIQTGRRRAEVDRLK 238

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  YLK+  EM  +F  +P ALENTV+IA RC+         LP F   E +     
Sbjct: 239  FPNDEFYLKSGDEMAELFGHIPGALENTVKIADRCNVEFNFDEHHLPHFDVPEGE----T 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  LR      +           G  +++ ++RLD+EL+VI  M F  YFLIV D++++
Sbjct: 295  SKTYLRKVCEREIPRLY-------GDTSEELKKRLDYELDVIGTMGFEDYFLIVWDYVRY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++
Sbjct: 348  AREHDILVGPGRGSAAGSVVAYLLGITGLDPLQYDLLFERFLNPERVSMPDIDIDFCYEK 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E I YV  KYG  RV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+    
Sbjct: 408  RGEAIDYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELG-- 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            ++L+        +     DP+V  L +  QKLEG+ R++STHAAG+VI   PL   VP+ 
Sbjct: 466  ITLEKALKGKDLKALYDTDPNVKELFDFGQKLEGIARNSSTHAAGVVISADPLDDHVPVQ 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                    VTQ++   IE+ GL+K DFLGL+TLT++  +L  +   RG+ +DL  IP DD
Sbjct: 526  NSNEEGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
                 LLT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +V  + +
Sbjct: 585  KAACELLTKGDTSGVFQLESDGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFID 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK + 
Sbjct: 645  RRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKES 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  Q+E FI G+  NGI ++IA  +F+LL  FA YGFNKSH+AAYA I+YQTA++K HY
Sbjct: 705  VLKAQRESFIQGSINNGIEESIANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHY 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              EF+AA+MT  M N++K+  +    ++ N+Q++ P VN     F V D+ I + L  IK
Sbjct: 765  FPEFMAATMTSFMQNMDKLTYYINACKKHNVQVLGPDVNHSLRSFAVQDDAIRFGLGGIK 824

Query: 844  GVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG       I E  A+  + S+ DFC RVDSK +N+R+LESL+  GA+D F  +R QLL
Sbjct: 825  NVGDNAIDRLIAEREANGLYTSITDFCRRVDSKVVNKRLLESLIRCGAMDGFEENRNQLL 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
               ++ Q      +K+      ++F        D I +      +   + ++E+   GFY
Sbjct: 885  HMYESAQAVGAKQQKDAAMGTMSLFGESTDDV-DMIPVPNLPDLSEDDKLKDEKDYTGFY 943

Query: 963  FSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             +GHPL  Y   L+ +  +    E+     G  I    ++  +  + T++G  +  +   
Sbjct: 944  ITGHPLQGYNKELKGLFELGQLLENPERFDGQTITFGGLIAERGDRPTKRGDVMSILRIE 1003

Query: 1022 EPAKEYEANFFP 1033
            + +   +   FP
Sbjct: 1004 DYSGSAQVVAFP 1015


>gi|254430744|ref|ZP_05044447.1| DNA polymerase III, alpha subunit subfamily, putative [Cyanobium sp.
            PCC 7001]
 gi|197625197|gb|EDY37756.1| DNA polymerase III, alpha subunit subfamily, putative [Cyanobium sp.
            PCC 7001]
          Length = 1180

 Score = 1058 bits (2736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1059 (37%), Positives = 591/1059 (55%), Gaps = 45/1059 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++      PA+A+TD   ++ A+E  +    AGI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPAMVERAVELGMPALALTDHGVMYGAIELLKLCSKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS- 128
            IIG ++ +       + +           +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVING---ALDDPNPPKKERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 118

Query: 129  -VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              R C+   L    +EGLI+ T    G I +A       VA +    ++++FGD  Y+ +
Sbjct: 119  FARACIDKQLLRQHSEGLIVATACLGGEIPQAILRGRPDVARQVAAWYQEVFGDDFYLEI 178

Query: 187  QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H G  DR   +++ ++     + L+ATN++ +LS  D EAHD L+ V    ++S + R
Sbjct: 179  QDHGGLEDRIVNTEIARIGQELGIELIATNDAHYLSVGDVEAHDALLCVLTGKLISDEKR 238

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKE 299
             R T   Y+K+ +EM+++F+D  E      A+ NT ++A +      +    +PRF   E
Sbjct: 239  LRYTGTEYIKSEAEMLALFADHLEPDVIRRAVANTAQVAEKVEDYDILGRYQMPRFPIPE 298

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                     + L   A  GL  RL     A+      Y +RL FEL V+ +M F  YFL+
Sbjct: 299  G----HTAVSYLSAVAEQGLRDRLE--LAAEAPFEPAYGERLRFELEVMEQMGFPTYFLV 352

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D+I++A++N IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D
Sbjct: 353  VWDYIRFARENRIPVGPGRGSAAGSLVAYALGITNIDPVVHGLLFERFLNPERKSMPDID 412

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
             DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KLI
Sbjct: 413  TDFCIERRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLI 472

Query: 480  PNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            P     P  L+ +         FRE    DP V R ++++ ++EG  +    HAAG+VI 
Sbjct: 473  PVVRGKPAKLKEMIGPESPAAEFREKYEKDPDVRRWVDMAMRIEGTNKTFGVHAAGVVIA 532

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
              PL +LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+LD + Q  G 
Sbjct: 533  ADPLDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLDLVQQSTGE 591

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VD   +P DD  TY LL      GIFQLESSGMRQ +  ++P C+EDI ++++LYRPGP
Sbjct: 592  TVDPDKLPLDDAATYGLLARGDLEGIFQLESSGMRQIVRDLKPSCLEDISSILALYRPGP 651

Query: 655  IDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +D   I  + NRK+G+E I   H  + P+L ET G+++YQEQ+M+IAQ L+GYSL EAD+
Sbjct: 652  LDAGLIPKFINRKHGREAIDFAHDKLQPILNETYGIMVYQEQIMKIAQDLAGYSLGEADL 711

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK K EM+K +  F+ GA++ G+   +A  +FE +  FA+Y FNKSH+ AY  +
Sbjct: 712  LRRAMGKKKKSEMEKHQTIFVEGATRRGVDTKVAEALFEQMVLFAEYCFNKSHSTAYGAV 771

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            ++QTA++K HYPV ++AA +T+     +K++++  +     I++MPP VN   +DF    
Sbjct: 772  TFQTAYLKAHYPVAYMAALLTVNAGASDKVQRYIANCNAMGIEVMPPDVNASGIDFTPVG 831

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +RI + L+A++ +G    R ++E    D PF SL D C R+  ++LNRR LE+L+ +GAL
Sbjct: 832  DRILFGLSAVRNLGDGAIRQLIEVRQEDGPFRSLADLCDRIPGQQLNRRALEALIHSGAL 891

Query: 892  DCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE---------------KGTF 934
            D      +R QL+  LD I  +A    ++R +   N+F                   G  
Sbjct: 892  DALEPSGNRAQLMADLDLILDWASSRARDRASGQGNLFDLMASSSAAEPASAGGAGGGDL 951

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
            S        +    + +   E+ ++GFY S HPL      +R +                
Sbjct: 952  STAPKAAPVNDYPPTEKLRLEKELVGFYLSDHPLKQLGRPVRLLSPVALATLEEQPDKAK 1011

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +   AMV   +Q  TRKG R+  +   +     EA  FP
Sbjct: 1012 VSAVAMVPELRQVTTRKGDRMAVLQLEDLTGSCEAVVFP 1050


>gi|227824700|ref|ZP_03989532.1| DNA polymerase III [Acidaminococcus sp. D21]
 gi|226905199|gb|EEH91117.1| DNA polymerase III [Acidaminococcus sp. D21]
          Length = 1156

 Score = 1058 bits (2736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1036 (36%), Positives = 592/1036 (57%), Gaps = 30/1036 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +SLL+GA  + +++        PA+AITD   ++ A+EF Q+    GI+PI
Sbjct: 22   FVHLHTHTQFSLLDGACRIPDLVSYAKELGMPALAITDHGVMYGAIEFYQECVKQGIKPI 81

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ I    +   T +       +  ++LL     GYQ L++LVS   +        R
Sbjct: 82   IGCEVYITSGSH---TVKNMEARGKLYHLILLAENRTGYQNLMKLVSIGQVEG-FYYKPR 137

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            I    L++   EGLI L+   +G + R       + AEK +L +  +F  D  Y+ +Q H
Sbjct: 138  IDKQDLRKYH-EGLICLSACVAGEVARHIVRGEKETAEKVMLEYLDIFGRDHYYLEIQNH 196

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +      ++  LA  + + LVATN+  ++ ++D +  D+L+ +  +       R R 
Sbjct: 197  GLPEEKAVADELHHLARKYNVKLVATNDLHYVHQDDAKGQDILLCIQTNARYLDPQRMRF 256

Query: 249  TPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D +YLK+RSEM ++F D  EAL+NT+EIA RC   L+    +LP F   E +      
Sbjct: 257  NNDSYYLKSRSEMEALFPDDAEALDNTLEIADRCDLTLEFGHLLLPEFPLPEGET---SM 313

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L+   V G + R  +   +        ++R+D+EL +I +M +SGYFLIV DFI + 
Sbjct: 314  DAYLKKLCVKGFQERYPKDDGSA-------QKRMDYELGIIRQMGYSGYFLIVWDFINYC 366

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            + ++IPVGPGRGS AGS+ AY   ITDIDPL+++L+FERFLNP+R+SMPD D D C  +R
Sbjct: 367  RTHDIPVGPGRGSAAGSIVAYLTGITDIDPLKYNLIFERFLNPERVSMPDIDTDICYVKR 426

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
              V+ Y+ +KYG   VAQI+TFG+L AKAA++DVGR++++P + V ++ KLIPN P   +
Sbjct: 427  HLVVDYLASKYGESHVAQIVTFGTLAAKAAIKDVGRSMEVPLNVVGQVNKLIPNTPGTTL 486

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY- 546
               A+      ++    DPS+ +L++ + ++EG+ RH STHAAG+VI    L+  VP+  
Sbjct: 487  K-SALEGSRDLQQLVQNDPSIAQLMDFAGRVEGMPRHTSTHAAGVVITPGELTNYVPLQI 545

Query: 547  ---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
                D   +   TQ++    E  GL+K D LGL+TLT++  ++  + +   +K+D+  I 
Sbjct: 546  TSTSDDDHEYICTQYDKDCSEALGLLKMDLLGLRTLTVIDDTVKMIEKNQGIKLDIHHID 605

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--V 660
             +D +T  +L    T  +FQ+ES GM + ++ + P+ + D+I LV+LYRPGP+ + +   
Sbjct: 606  LEDPKTCQMLCAGDTAAVFQMESDGMTRLMKELGPESMADLIPLVALYRPGPLGSGMAED 665

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   ++GK     +HPL++P++ +T GVI+YQEQVMQI  +L G+SL EAD+LRRAMGKK
Sbjct: 666  FIAGRHGKRTARVLHPLMEPIVADTYGVILYQEQVMQIVSVLGGFSLGEADILRRAMGKK 725

Query: 721  IKEEMDKQKERFISGAS-KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
              + +D  KE+F++GA+ ++ IS+ +   IF LL  FA YGFNKSH+AAYA+++YQTA++
Sbjct: 726  KAKLLDSMKEKFLAGAAREHQISRQLGEEIFALLQHFAGYGFNKSHSAAYALVAYQTAYL 785

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K +YPVE++AA +   +   EK+  +    R   I+++PP +N+    F V  + + + L
Sbjct: 786  KANYPVEYMAAFLNSVITVAEKVSWYISVCRDMGIKVLPPDINSSEAAFSVDGDNVRFGL 845

Query: 840  AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIK VG T    I+ E      F    DF SRVD  K+N+RV+E+L+ +G++D FGY R
Sbjct: 846  GAIKSVGETAVAVILKERERHGLFKDFFDFASRVDLTKVNKRVVENLIKSGSMDTFGYRR 905

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             QLL  +D     A   + +R     ++F  +    +  I +              E+ +
Sbjct: 906  RQLLAIMDRALDAAAQDQHDRMTGQLSLFGGDTRQSAAAIPIPDLPEIPKDEVLRLEKEL 965

Query: 959  LGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            +GFY +GHPLD ++ +L  M GI    E      G  + +  ++   + + T+KG R+  
Sbjct: 966  IGFYVTGHPLDAFRKVLSSMTGIARCTEEH-YHDGERVTVGGLITGVRIRSTKKGERMAT 1024

Query: 1018 VTFSEPAKEYEANFFP 1033
                +         FP
Sbjct: 1025 FMLEDLTGSIGVIAFP 1040


>gi|187935605|ref|YP_001887524.1| DNA polymerase III DnaE [Clostridium botulinum B str. Eklund 17B]
 gi|187723758|gb|ACD24979.1| DNA polymerase III subunit alpha [Clostridium botulinum B str. Eklund
            17B]
          Length = 1203

 Score = 1058 bits (2735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1077 (35%), Positives = 599/1077 (55%), Gaps = 66/1077 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL+G+  +  I+ K       +IAITD   L+  ++F + A   GI+P
Sbjct: 19   DFVHLHLHTGYSLLDGSGKIKEIMAKTKELGMNSIAITDHGVLYGLVDFYKAALEYGIKP 78

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +  +    M  +      +   +VLLV    GY+ L+++VS   +        
Sbjct: 79   ILGCEVYVAGKS---MKIKQPDKDNSTYHLVLLVKNEIGYRNLMKIVSTASIEG-FYYKP 134

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+   +L +  +EGLI L+    G +       + + A++  + +K++F +  Y+ +Q H
Sbjct: 135  RVDHEYL-KAHSEGLIALSACLGGEVQSYELKGNYEKAKETAILYKEIFKEDFYLEIQNH 193

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +   + ++L+    +PLVATN+  ++ ++ Y++HD+LM +     V   +R R 
Sbjct: 194  GMDEQRKVNEENIKLSKELGIPLVATNDVHYIKKDGYKSHDILMCIQTGKTVDDVNRRRY 253

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +FS +PEALENTV+I+++C++  + H   LP+F   + +    E 
Sbjct: 254  PSDQFYLKSPEEMWEMFSYIPEALENTVKISKQCNYEYKFHESKLPKFPLPQGE----EP 309

Query: 308  ENELRNKAVAGLEVRLAQ---------------GAIAKGYHAQDYRQRLDFELNVIARMK 352
             N L+N    GL  R  +                  +K   A++   RL++EL +I +M 
Sbjct: 310  YNYLKNTCYMGLIERYEEFKELRDKDLDYDELDDLKSKNDSAKNLIDRLEYELQIIRQMG 369

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            +  YFLIV DFI++A  N IP GPGRGS AGS+ AY L IT IDP+++SL+FERFLNP+R
Sbjct: 370  YIDYFLIVWDFIKFANDNGIPTGPGRGSAAGSIIAYTLGITKIDPIKYSLIFERFLNPER 429

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD D DFC +RR EVI YV  KYG + V+QIITFG++ A+A +RDVGRA+   YS+V
Sbjct: 430  VSMPDIDSDFCYERRQEVIDYVVEKYGEDNVSQIITFGTMAARACIRDVGRAMNYSYSEV 489

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            D++CK+IP      +  +A+  +   +E    D  V  L+++S+ LEGL RH+STHAAG+
Sbjct: 490  DKICKMIPTMLGITIE-KALDFNPELKEIYDKDERVKSLIDMSKDLEGLPRHSSTHAAGV 548

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
            VI   PL Q VP+ +    ++ VTQF M  +E+ GL+K DFLGL+TLT++ ++L  + + 
Sbjct: 549  VIASTPLVQYVPLQK--NDEMIVTQFGMTTLEELGLLKMDFLGLRTLTVMNEALKIIKEN 606

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            R + +DL  I F+D E Y ++    T G+FQLES GM   ++ ++PD +EDIIA +SLYR
Sbjct: 607  RNIDIDLDKIDFEDKEVYKMIGEGKTAGVFQLESPGMVSFMKELKPDSLEDIIAGISLYR 666

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+  I  Y   K   EK+    P ++ +L  T GV++YQEQVM+I + L+GYS+  +D
Sbjct: 667  PGPMAEIPRYIECKRNPEKVKYDAPELEEILDVTYGVMVYQEQVMEIVRKLAGYSMGRSD 726

Query: 712  VLRRAMGKKIKEEMDKQKERFIS-----------GASKNGISKTIAVNIFELLAKFADYG 760
            ++RRAM KK  + M+++++ FI            G  +NGIS+  A  IF+ +  FA Y 
Sbjct: 727  MVRRAMSKKKHKVMEEERKNFIHGIIENDEVVVPGCIRNGISEEAANKIFDNMMDFASYA 786

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSHAAAYAV+ YQTA++  +YPVE +AA +   M + EK+  +   A +  IQ++PP 
Sbjct: 787  FNKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSFMGSSEKVVYYISKAEELGIQVLPPD 846

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNR 879
            +N     F V    I + LAAIK VG      +++   +   FDSL DF S++D   +N+
Sbjct: 847  INESFAKFAVKGETIRFGLAAIKNVGMNLINSVVKTRENKGKFDSLFDFISKIDLSAINK 906

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R +ESL+ +G  D F   R +LL   + +        K   +   ++FA +   +  +I 
Sbjct: 907  RTIESLIKSGTFDSFKIYRSKLLAVYEKMVDSISSDRKRNIDGQISLFASD-DIYVPEIE 965

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG-------------------I 980
                +  +       E+ + G Y SGHPLD Y   L+                      I
Sbjct: 966  YPNINEFDKRSLLTMEKEMTGLYISGHPLDDYAQSLKFQTSNEIGKIFSHHELLDDTLEI 1025

Query: 981  KGYEESVATIRG----NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  ++ +    G    + + L  ++    +K TR  + + ++   +     E   FP
Sbjct: 1026 QMLDDVINNESGINDNDRVILGGILTQVNKKVTRNNTIMAFLQLEDLTGTIEVIVFP 1082


>gi|126725821|ref|ZP_01741663.1| DNA polymerase III subunit alpha [Rhodobacterales bacterium HTCC2150]
 gi|126705025|gb|EBA04116.1| DNA polymerase III subunit alpha [Rhodobacterales bacterium HTCC2150]
          Length = 1170

 Score = 1057 bits (2734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 505/1062 (47%), Positives = 687/1062 (64%), Gaps = 53/1062 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VHS YSLLEGA+ +  +   +     PA+A+TDTNNLF+ALE S+    
Sbjct: 1    MTNDPRFIHLRVHSEYSLLEGAMRVKKLAGLVKKSNMPAVALTDTNNLFAALEVSETLAK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPIIGCQ+DI  +       +G+TP P    +V L     GY+ L++L S +YL D+
Sbjct: 61   EGLQPIIGCQVDIAAE-----VARGETP-PAPAPLVFLAQNEVGYENLMKLNSCLYL-DK 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                    ++ + +   +GLI LTGG+ GPI +     S   A+  +    ++FGDRLYV
Sbjct: 114  AGALPSATMAEVAQY-NDGLICLTGGADGPIGQLLQSGSLPAAKAMMSELAQVFGDRLYV 172

Query: 185  NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G +         E   V++AY   LPLVATN+  F + E +EAHD LM ++   
Sbjct: 173  ELQRHPGAEGPQQAEAKTERGFVEMAYEMNLPLVATNDVYFPNTEMFEAHDALMCISQGA 232

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q D R ++T  HY K++ EM+++F+DLPEA+ENTVEIA+RC+F      PILP+F +
Sbjct: 233  YVDQLDSRRQLTDQHYFKSQQEMITLFADLPEAIENTVEIAKRCAFKTYKRDPILPKFAD 292

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E D        ELR +A AGL+ RL    I      ++Y +RLDFEL +I  M F GYF
Sbjct: 293  DEVD--------ELRLQAHAGLKARLE--VIPHATSVEEYEKRLDFELGIIEGMGFPGYF 342

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 343  LIVADFIKWAKDHEIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 402

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL K
Sbjct: 403  FDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSK 462

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+ +A+AD+ R RE   A+  V+RLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 463  MIPVEGVKPVSIEKALADEPRLREEAKAEEVVERLLRYGQQVEGLLRNASTHAAGVVIGD 522

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--- 593
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D +   G   
Sbjct: 523  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTIVQNAVDLIKASGRSL 582

Query: 594  ---------------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                            + D++ IP DD  +Y L     T+ +FQ+ESSGM  AL  M+PD
Sbjct: 583  HVGADGRQLYEPLAGTENDINAIPLDDEASYELYAAAKTIAVFQVESSGMMDALRRMKPD 642

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDIIALV+LYRPGP++NI  +   KNG  +   +HP ID +L ETQG+I+YQEQVMQI
Sbjct: 643  CIEDIIALVALYRPGPMENIPKFCEVKNGLSERDKLHPTIDHILDETQGIIVYQEQVMQI 702

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ ++GYSL  AD+LRRAMGKK++E MD +K +FI G+S+NG+ +  A  +++LL KFA+
Sbjct: 703  AQEMAGYSLGGADLLRRAMGKKLQEAMDAEKPKFIKGSSENGVDEKKAREVWDLLDKFAN 762

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ------F 812
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  +  + R+       
Sbjct: 763  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDLHLTDKLAVYADEVRKPTDRGGM 822

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             I+I+PP VN     F V + R+ Y+L A+K VG    R I  A  DKPF +L D   R 
Sbjct: 823  GIEIIPPCVNRSDAVFSVSEGRVVYALGALKNVGVEAMRLITGARGDKPFVTLFDLARRA 882

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D K++ +R +E L  AGA D    +R ++ +SLD +  Y+  + + R +   ++F  E G
Sbjct: 883  DLKRVGKRPMEMLARAGAFDELDRNRARVSRSLDALVSYSAAIHEQRASNQVSLFG-EAG 941

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                +  L        + R   E   +GFY SGHPLD Y   L++ G+    E+   + G
Sbjct: 942  DDLPEPRLTPCDDWLPAERLSEEFTSIGFYLSGHPLDDYMVALKRSGVMTLHEATQKVAG 1001

Query: 993  --NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++LA  +  +Q++K+ +G+R  +V  S+   +YE   F
Sbjct: 1002 GAAVVKLAGTISGRQERKSARGNRFAFVQLSDTTGQYEVTMF 1043


>gi|78779238|ref|YP_397350.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT
            9312]
 gi|78712737|gb|ABB49914.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT
            9312]
          Length = 1165

 Score = 1057 bits (2734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1048 (36%), Positives = 604/1048 (57%), Gaps = 36/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F+ L  HS YSLL+GA  ++ I+D+       +IA+TD   ++  L+  +K    GI+P
Sbjct: 2    GFIPLHNHSDYSLLDGASQISKIVDRACELGMDSIALTDHGVMYGVLDLVKKCKEKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          + +  +     +V+L     GY+ L++L +  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPKKEKRY----HLVVLAKNRTGYKNLVKLTTISHLNGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L +  +EGLI+ T    G I +A       VAE   L +K LF D  Y+ 
Sbjct: 118  FSRPCIDKFLLSKY-SEGLIISTACLGGEIPQAILKGRLDVAEDIALWYKNLFADDFYLE 176

Query: 186  LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    +++++   H++ ++ATN++ +LS  D EAHD L+ V    ++S + 
Sbjct: 177  IQDHGSIEDRIVNIELLRIGKKHQIKVIATNDAHYLSNMDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   Y+K+ +EM+ +F D      + EA+ NTVEI+++           +P+F   
Sbjct: 237  RLRYTGTEYIKSENEMLELFKDHIDDESIKEAVNNTVEISQKIEVFDLFGKYRMPKFPLN 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E  D      + L   +  GL  RL +  +      ++Y++RL  EL +I  M F  YFL
Sbjct: 297  EDTD----SFSLLTQLSNEGLLKRLKKNTLT--EVDENYKKRLSSELKIIKDMGFPDYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP R SMPD 
Sbjct: 351  VVWDYIKFARDNSIPVGPGRGSAAGSLVAYALQITNIDPVEHGLLFERFLNPARKSMPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC DRR+EVI YV N+YG ++VAQIITF  + +KA L+DV R L +PY + D+L KL
Sbjct: 411  DTDFCIDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADKLAKL 470

Query: 479  IPNDPAHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L  + D       FR+  + D  V + ++++ ++EG  +    HAAG+VI
Sbjct: 471  IPVVRGKPHKLNEMIDKNSPSQEFRDKYINDNRVKKWIDLALRIEGTNKTYGVHAAGVVI 530

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
               PL +LVP+ R+      +TQ++M  IE  GL+K DFLGLK LT+++K++  + Q  G
Sbjct: 531  ASDPLDELVPLQRN-NEGQIITQYSMDDIESLGLLKMDFLGLKNLTMIEKTVSLINQSTG 589

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              +++  +P +D +T+ L+      GIFQLESSGM+Q ++  +P+ +EDI ++++LYRPG
Sbjct: 590  KTINIDNLPQNDDKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALYRPG 649

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRKNG EK+   HP I  +L ET G+++YQEQ+M+IAQ L+GYSL +AD
Sbjct: 650  PLDAGLIPKFINRKNGNEKVDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSLGDAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM K +  F+ G+ K G+++ +A ++F+ +  FA+Y FNKSH+ AY  
Sbjct: 710  LLRRAMGKKKVSEMVKHRNIFVDGSMKKGVNEKLANDLFDQMVLFAEYCFNKSHSTAYGA 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K H+PV ++AA +++   + +K++++  +     I+++ PS+N   +DF + 
Sbjct: 770  VTYQTAFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMGIEVISPSINFSGIDFTIK 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            +N+I + L+AIK +G +  R+I+E   +   F SL D C R+ S  LN+R +ESL+  GA
Sbjct: 830  NNQILFGLSAIKNLGDSAIRNIIENRNNSGSFKSLSDLCDRLPSNVLNKRSIESLILCGA 889

Query: 891  LDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG---TFSDKITLEKFSV 945
            LD F    +R QLL  L+++ ++A    ++R +   N+F  ++           L K   
Sbjct: 890  LDEFSNNNNRAQLLSDLEHVIEWASSRNRDRLSGQGNLFDSKEEFSNVAFSDSQLAKVDD 949

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +   + + E+++LGFY S HPL       + +      +   T     + L  M+   +
Sbjct: 950  YSLIDKLKLEKQLLGFYLSDHPLKHLTKPAKLVSPISVSQLEETKDRTKVSLVGMIPELK 1009

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q  TRKG R+  V   + +   EA  FP
Sbjct: 1010 QITTRKGDRMAIVQLEDLSGSCEAIVFP 1037


>gi|253999458|ref|YP_003051521.1| DNA polymerase III subunit alpha [Methylovorus sp. SIP3-4]
 gi|253986137|gb|ACT50994.1| DNA polymerase III, alpha subunit [Methylovorus sp. SIP3-4]
          Length = 1149

 Score = 1057 bits (2734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1037 (40%), Positives = 624/1037 (60%), Gaps = 34/1037 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P+F+HL+ HS YS+++G + + + +   AAD+ PA+A+TD +NLF A++F + A   G
Sbjct: 2    SQPTFIHLRCHSEYSVVDGTVRIGDYVKAAAADRMPALALTDLSNLFGAVKFYKSARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P++GC L ++ + N                ++LL  T  GY +L EL+SR YL +Q +
Sbjct: 62   LKPVLGCDLWLENETN----------RDQPYRLLLLCQTHAGYLKLCELLSRAYLENQHR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E G EGLIML+G  +G + +A    + Q A      +  LF +R Y+ L
Sbjct: 112  GRAEIKRQWLVEAGGEGLIMLSGAMAGDVGQAILQGNQQAALALAQQWAALFPNRFYIEL 171

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR       +  S+ + LA   +LP+VAT+   F+  +D++AH+  + +A   V++   R
Sbjct: 172  QRAGHAQQEFYISRALALAGDLDLPVVATHPVQFMQADDFKAHEARVCIAEGYVLADNRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   TP+ + K ++EM ++F+D+P+AL N+VEIA+RC+  L +    LP+F     + + 
Sbjct: 232  PKHFTPEQFFKTQAEMAALFADVPQALANSVEIAKRCNLTLTLGKNYLPQFPTPNGESL- 290

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               +  L  +A  GLE RL         +      Y  RL+FE N+I +M F GYFLIVA
Sbjct: 291  ---DEYLVVQAKLGLEKRLQVLYPDEAVRDAKRPVYLTRLEFETNIIIQMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGSV AY+L ITD+DPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSVVAYSLGITDLDPLQYALLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ+ RD VI YV++KYG   V+QI TFG++ AKA +RDVGR L +P++ VD + KLIPN
Sbjct: 408  FCQEGRDRVIDYVKHKYGLASVSQIATFGTMAAKAVIRDVGRVLDLPFNFVDGIAKLIPN 467

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +S  A+  + + +E R  +  V+ LLE++ +LEGL R+   HA G++I    +S 
Sbjct: 468  ELGITLS-DALEKEPQLKERREQEEEVNELLELALRLEGLTRNIGMHAGGVLISPGKISD 526

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKV 596
              P+Y     +  V+Q++   +E  GL+KFDFLGL+TLT+L  +L+        +    +
Sbjct: 527  FSPIYCQQNGESLVSQYDKDDVEAVGLVKFDFLGLRTLTILAMALENANAQRALKELPPL 586

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D   +P +D  TY LL +  T  +FQLES GM+  L+  +PDC EDIIALV+LYRPGP+D
Sbjct: 587  DFETLPINDKPTYQLLKSANTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYRPGPMD 646

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I  +  RK+G++++   HP  +P+LKET G+++YQEQVMQIAQ+++GYSL  AD+LRRA
Sbjct: 647  LIPDFCRRKHGQQRVEYPHPATEPILKETYGIMVYQEQVMQIAQVVAGYSLGGADLLRRA 706

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK KEEMD Q+  F+ GA KNG  +  A  +F+L+ KFA YGFNKSHAAAYA+++Y T
Sbjct: 707  MGKKKKEEMDAQRAVFVEGAVKNGTPEKQAAELFDLMEKFASYGFNKSHAAAYALVAYHT 766

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRI 835
            A++K HYP  FLAA+M+ +M+N + +  F  D     ++++ P +N     FK + D ++
Sbjct: 767  AYLKAHYPAAFLAATMSADMNNTDSVHIFYDDCAANGVEVLAPDINQSEFRFKPISDKQV 826

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y L A+KG G      I+ A  A+ PF  L DFC R+D +K+NRRV+ESL+ AGA D  
Sbjct: 827  LYGLGAVKGTGWAAIEVILAAREAEGPFKDLFDFCRRLDLRKVNRRVIESLIRAGAFDKL 886

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R  LL  +      A+       +   ++F     + +   TL K +  +   + + 
Sbjct: 887  EPNRAALLAGVSLAISAAEQS--GAASGQNSLFGEMSDSVAH--TLPKVNAWSEQEKLQQ 942

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LGFYFSGHP + YK  L               +     LA +V+  + + T++G  
Sbjct: 943  EKSALGFYFSGHPYEGYKRELATFVRTTLGNL--KPQDQPQLLAGVVMGIRIRMTQRGK- 999

Query: 1015 IGWVTFSEPAKEYEANF 1031
            +  VT  +     E   
Sbjct: 1000 MAIVTLDDATSRIEIVV 1016


>gi|325263157|ref|ZP_08129892.1| DNA polymerase III, alpha subunit [Clostridium sp. D5]
 gi|324031550|gb|EGB92830.1| DNA polymerase III, alpha subunit [Clostridium sp. D5]
          Length = 1157

 Score = 1057 bits (2734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1047 (35%), Positives = 565/1047 (53%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F ++A   GI+P
Sbjct: 2    DFAHLHVHTEYSLLDGSNKIREYVARVKELGMNSAAITDHGVMYGVVDFYREAKKQGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G         +VLL     GY  L+++VS+ ++        
Sbjct: 62   ILGCEVYVAPNSRFDREISGG--DDRYYHLVLLAENNIGYANLMKIVSKGFVEG-YYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+  + L+E   EG+I L+   +G + R       + A+K  L ++ +F     ++ LQ 
Sbjct: 119  RVDKALLEEYH-EGIIALSACLAGEVQRYLTKGLYEEAKKSALEYQDIFGKGNYFLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     +++Q++   ++ LVATN+  +   ED + HD+L+ +  +  ++ ++R R
Sbjct: 178  HGIPEQTLVNQKLLQMSEELDIELVATNDVHYTLAEDEKPHDILLCIQTAKKLADENRMR 237

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM  +F    +ALENT  IA RC   ++     LP++   +       
Sbjct: 238  YEGGQYYVKSPEEMAHLFPYALQALENTQRIANRCEVEIEFGVLKLPKYDVPDG----LT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GLE      +       +          N I  M +  YFLIV DFI++
Sbjct: 294  AWEYLNKLCFEGLEKHYENPSEELRERLEYEL-------NTIKNMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N I VGPGRGS AGS+ +Y L ITDIDP+R+ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  AKDNGIAVGPGRGSAAGSIVSYCLEITDIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG+L A+  +RDVGRA+ +PY+ VD + K+IP +    
Sbjct: 407  RQEVIDYVVRKYGKDRVVQIVTFGTLAARGVIRDVGRAMDLPYAFVDTIAKMIPTELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   R+    D  V  L+++S++LEGL RH+S HAAG+VI  + + + VP+ 
Sbjct: 467  ID-KALKMNPELRKTYETDEQVKYLIDMSKRLEGLPRHSSMHAAGVVISQKSVDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            R  +     TQF M  +E+ GL+K DFLGL+TLT++Q ++  +  +   +D+  I ++D 
Sbjct: 526  RA-QDGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVRLVKHKNPGLDMDQIDYNDK 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +    + T  T GIFQLES+GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 585  DVLDYIGTGKTDGIFQLESAGMKSFMKELKPHSLEDIIAGISLYRPGPMDFIPQYIRGKN 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK  + M 
Sbjct: 645  DAGSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKGDVMQ 704

Query: 727  KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+++ F+         G   NGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTA+
Sbjct: 705  KERQIFVHGDEENGVPGCVANGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTAY 764

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPVEF+AA MT  ++N  K+ ++    RQ +I+I+PP +N    DF V +  I Y 
Sbjct: 765  LKYYYPVEFMAALMTSVIENPPKVAEYIYTCRQMDIKILPPDINRGVADFSVDEGNIRYG 824

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK-KLNRRVLESLVFAGALDCFGY 896
            LAAIK VG      I+    +  PF +LEDF SR+  K  LN+RV+E+ + AGALD    
Sbjct: 825  LAAIKSVGKPVIEAIVSDRNEFGPFKNLEDFISRMSVKDSLNKRVIENFIKAGALDGLDG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I ++    +K       ++F    ++     +I L              
Sbjct: 885  TRKQFMSIYVQIVEHVNQEKKYAMTGQMSLFDLVDDEQKSEFEIKLPDVGEYTKENLLAF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+  +   RK       +              G    +  M+  K  
Sbjct: 945  EKEVLGIYISGHPLEEDEEKWRKSISATTADFQPDEETGTTKVHDGAKEIIGGMITDKTV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K TR    + ++T  +     E   FP
Sbjct: 1005 KNTRNNQMMAFLTLEDLLGTVEVVVFP 1031


>gi|88706741|ref|ZP_01104443.1| DNA polymerase III alpha subunit [Congregibacter litoralis KT71]
 gi|88699062|gb|EAQ96179.1| DNA polymerase III alpha subunit [Congregibacter litoralis KT71]
          Length = 1168

 Score = 1057 bits (2734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1045 (39%), Positives = 601/1045 (57%), Gaps = 42/1045 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VHS YSL +G + +  +  + A    PAIA+TD  N +  ++F + A  AGI+P
Sbjct: 3    DFVHLRVHSEYSLSDGLVRIKALAARTAELGMPAIAVTDVCNFYGLIKFHKAAVNAGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  + +                     + LLV  A GY  L  L+SR Y   Q  +  
Sbjct: 63   IFGADVWVTES----------LKDDEAHPLCLLVMNATGYLNLTRLLSRAYREGQTHEGP 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+   W+ E   EGL+ L+ G++G + +A   +   VA +RL    ++F  R Y+ L R 
Sbjct: 113  RVLWDWVAE-SAEGLLALSCGAAGEVGQALVNDKPAVARQRLERCLEIFPGRFYLELHRT 171

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
                D       V LA  +  P+VATN+  F+   ++EAH+  + +A S V+    R  R
Sbjct: 172  GRVGDEEHVHAAVALAEQYACPVVATNDVRFIDASEFEAHEARVCIAESRVLDDPRRQRR 231

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + + YL++  EM  +F D+PEALENTV IARRCS  +++    LP +   E   +    
Sbjct: 232  YSEEQYLRSVEEMQELFEDIPEALENTVAIARRCSMEIELGRVCLPDYPVPEGMTM---- 287

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFLIVADF 363
            +   R  +  GL+ RL    I +  +A+    DYR RLDFEL+ I  M F GYFLIV DF
Sbjct: 288  DAYFRELSHRGLDERLKTLQIHQRENAEDLERDYRARLDFELDTIIDMGFPGYFLIVMDF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK+  IPVGPGRGSGAGS+ AY L+ITD+DP+ + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IRWAKERGIPVGPGRGSGAGSLVAYCLSITDLDPMEYELLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RRDEVI YV   YG E V+QIITFG+L AKA +RDV R     Y   DRL K+IP + 
Sbjct: 408  MERRDEVIDYVAETYGREAVSQIITFGTLAAKAVVRDVARVQGKSYGLGDRLSKMIPFEV 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A+  +   ++    D     + +++ +LEG+ R+   HA G+VI    L+   
Sbjct: 468  GMTLE-KALEQEESLQQFLRDDSEAQEIWDMAVQLEGVTRNVGKHAGGVVIAPSELTDFS 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----RGVKVDL 598
             +Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +   + +         +D+
Sbjct: 527  ALYCDGEGAGLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWAQGMINEIRARNDEPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD  ++ LL +  T  +FQLES GM++ +  ++PDC EDIIALV+LYRPGP+ + 
Sbjct: 587  NQIPLDDPASFDLLRSAETTAVFQLESRGMKELIARLRPDCFEDIIALVALYRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + +RK+G+EK+        H L+ P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFIDRKHGREKVSYPDADYQHELLKPVLEPTYGIILYQEQVMQIAQILAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F +GA+  G+   +A  +F+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  LLRRAMGKKKPEEMAKQRSVFAAGAASKGVDADLATKLFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQTAW+K HYP  F+AA M+ E+DN +KI  F ++ R+  + +  P VN     F V 
Sbjct: 767  VSYQTAWLKAHYPAAFMAAVMSSELDNTDKIVVFIEECRRMGLTVRLPDVNEGRYMFTVS 826

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                I Y L AIKG+G      ++E+  AD PF  L DFC+R D +KLNR+ LE+LV +G
Sbjct: 827  EAGEIVYGLGAIKGLGEGPVSGLLESREADGPFRDLFDFCARTDPRKLNRKALEALVRSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK----ITLEKFSV 945
            A D  G  R  LL  +D+  + A+    NR     ++F        ++     +L     
Sbjct: 887  AFDSLGTERWVLLAGIDDALRAAEQNAANRDAGMVDLFGETVEASQEQGDPYGSLRHVRP 946

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                 R + E+  LG Y +GHP+D  +  LR+   +   +     RGN  R+A +++S +
Sbjct: 947  WTDRERLQGERDTLGLYVTGHPIDACEDELRRFAPQRLADLRTDSRGN-CRVAGLILSMR 1005

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEAN 1030
              K+ +G  +      + +   EA 
Sbjct: 1006 AMKSARG-AMAVFVLDDRSARLEAT 1029


>gi|260434289|ref|ZP_05788259.1| DNA polymerase III, alpha subunit [Synechococcus sp. WH 8109]
 gi|260412163|gb|EEX05459.1| DNA polymerase III, alpha subunit [Synechococcus sp. WH 8109]
          Length = 1172

 Score = 1057 bits (2734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1053 (37%), Positives = 586/1053 (55%), Gaps = 41/1053 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++      PAIA+TD   ++ A+E  +      ++P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPAMVERARQLGMPAIALTDHGVMYGAIELLKLCQGTDLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          + +  +     +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPKKEKRY----HLVVLAKNATGYRNLVKLTSISHLRGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L++  +EGLI+ T    G I +A       VA K    ++++F D  Y+ 
Sbjct: 118  FSRACIDKELLKQ-HSEGLIIATACLGGEIAQAILRGRPDVARKVAAWYQEVFADDYYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    +VV++A    + +VATN++ +LS++D EAHD L+ V    +++ + 
Sbjct: 177  IQDHGSPEDRIVNVEVVKIAKELGIQIVATNDAHYLSKQDVEAHDALLCVLTGKLITDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   Y+K   EM  +F D        EA+ NTV++A +      +    +PRF   
Sbjct: 237  RLRYTGTEYIKTEEEMDLLFGDHLEPEVVQEAIANTVKVAEKVEPYDILGRYQMPRFPIP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E         + LR     GL  RL      +     DY +R+  EL ++ +M F  YFL
Sbjct: 297  EA----HTPVSYLREVTEQGLRDRLE--LSPEAPLPDDYAERMAHELKIMEQMGFPTYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A++ NIPVGPGRGS AGS+ AY L IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 351  VVWDYIRFARERNIPVGPGRGSAAGSLVAYCLGITNIDPITNCLLFERFLNPERKSMPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KL
Sbjct: 411  DTDFCIERRSEVIDYVTERYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKL 470

Query: 479  IPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L+A+  +      FRE   ADP+V R ++++ ++EG  +    HAAG+VI
Sbjct: 471  IPVVRGKPAKLKAMIGEESPNPEFREKYEADPTVKRWVDMAMRIEGTNKTFGVHAAGVVI 530

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRG 593
               PL +LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT+++K+L+ +    G
Sbjct: 531  AADPLDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIEKTLELVEVSSG 589

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +VD   +P  D ET+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRPG
Sbjct: 590  TRVDPDKLPPQDEETFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPG 649

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRK+G+E I   H +++P+L ET G+++YQEQ+M+IAQ L+GYSL +AD
Sbjct: 650  PLDAGLIPKFINRKHGREAIDFAHAILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM K +  F+ GA + G+ + +A  +F+ +  FA+Y FNKSH+ AY  
Sbjct: 710  LLRRAMGKKKVSEMQKHRGIFVKGAGERGVDEKVADELFDQMVLFAEYCFNKSHSTAYGA 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K HYPV ++AA +T+     +K++++  +     I++MPP VN    DF   
Sbjct: 770  VTYQTAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDVNASLTDFTPN 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             +RI + L+A++ +G    R ++ A  +D PF SL D C R+ S  LNRR LESL+  GA
Sbjct: 830  GDRILFGLSAVRNLGDGAIRQLIAARDSDGPFRSLADLCDRIPSSVLNRRGLESLIHCGA 889

Query: 891  LDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--------KGTFSDKITL 940
            LD      +R QL+  LD +  +A    K+R +   N+F               S     
Sbjct: 890  LDAMDPQANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAPAADADGPADLSHAPKA 949

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                    + +   E+ ++GFY S HPL    P  + +   G            +   AM
Sbjct: 950  APVPDYPPTEKLRLEKDLVGFYLSDHPLKQLTPSSKLLAPIGLGSLEEQPDKAKVSAIAM 1009

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V   +Q  TRKG R+  +   +     EA  FP
Sbjct: 1010 VAEMRQVTTRKGDRMAILQLEDLTGSCEAVVFP 1042


>gi|254488409|ref|ZP_05101614.1| DNA polymerase III, alpha subunit subfamily, putative [Roseobacter
            sp. GAI101]
 gi|214045278|gb|EEB85916.1| DNA polymerase III, alpha subunit subfamily, putative [Roseobacter
            sp. GAI101]
          Length = 1177

 Score = 1057 bits (2733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 499/1068 (46%), Positives = 690/1068 (64%), Gaps = 58/1068 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+ HS YSLLEGAL L  + D   +   PA+A+TDTNN+F+ALEFS     
Sbjct: 1    MAHTPRFIHLRTHSEYSLLEGALRLKKLPDLCKSAGMPAMALTDTNNMFAALEFSIAMSG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+D+           G+ P    P +VLL  +  GY+ L++L S +Y+ D+
Sbjct: 61   AGVQPIIGCQVDLAY----VQAQPGEKPRLPAP-VVLLAQSEPGYENLMKLNSCLYI-DK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     + L  L+ + + G+I LTGG+ GP+ +      +  AE  +      FGDRLYV
Sbjct: 115  GGALPEVTLDQLESL-SAGIICLTGGAGGPVGQLLQTGQAPAAEALMKRLHGAFGDRLYV 173

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       +R  E   V++AY   +PLVATN+  F     YEAHD L+ +A   
Sbjct: 174  ELQRHPGENGQPEAERLTERGFVEMAYAMGIPLVATNDVYFPKTSMYEAHDALICIADGA 233

Query: 239  VVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q+ DR R+T  HY K++SEMV++F+DLPEA++NTVEIA+RC+F+     PILP+F +
Sbjct: 234  YVDQQQDRRRLTAQHYFKSQSEMVTLFADLPEAIDNTVEIAKRCAFMAYRRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E +        EL+ +A  GL+ RL    I      +DY +RLDFEL +I  M F GYF
Sbjct: 294  DEIE--------ELKRQAHEGLKNRLK--VIPHATSVEDYEKRLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIQYVQRKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+ +A+AD+ R R+    +  V RLL+  Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALADEPRLRDEARNEEVVARLLDYGQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
            RPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D +   G   
Sbjct: 524  RPLDRLVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKSSGRHL 583

Query: 596  -----------------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                              D++ IP DD  +Y L  +  T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  HIAADGTELFAPPEGLIDDIATIPLDDEASYKLYASAKTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG ++  S+HP ID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPTYCEVKNGIKERESVHPSIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  GA  NG+ K  A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMANGVDKKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R +  +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKRLELPWV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA----DKPFDSLEDFCSRVD 873
            PP VN     FKV +  + Y+L A+K VG    + I +       D+PF +L D   RVD
Sbjct: 824  PPCVNRSDAMFKVVEGALVYALGALKNVGVEAMKLITQGRKIEGVDRPFATLFDLARRVD 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             K++ +R LE L  +GA D    +R ++  +LD +  Y+  + + + +   ++F  E G 
Sbjct: 884  LKRVGKRPLEMLARSGAFDQLDNNRRRVWNALDGLVSYSAAIHEQKASNQVSLFG-EAGD 942

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG------IKGYEESV 987
               +  +       ++ R   E + +GFY SGHPLD Y   +++            +E  
Sbjct: 943  DLPEPRILPCDDWEAAERLTEEFKAVGFYLSGHPLDDYMGPMKRKSASGGVPFLTLDELT 1002

Query: 988  AT--IRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                I+G  N RLA +V  +Q++K+ +G+R  +   S+P   YE   F
Sbjct: 1003 EKVSIKGAMNARLAGVVAGRQERKSARGNRFAFAQLSDPTGAYEVTLF 1050


>gi|331005660|ref|ZP_08329027.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC1989]
 gi|330420518|gb|EGG94817.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC1989]
          Length = 1241

 Score = 1057 bits (2733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1107 (37%), Positives = 602/1107 (54%), Gaps = 86/1107 (7%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            ++     +  FVHL++H+ +SL++G + +  ++ K+A    PA+A++D  N +  ++F  
Sbjct: 1    MSDPTTNTNPFVHLRLHTEFSLVDGTVRIKPLVAKVAEMGMPAVAVSDVCNFYGLIKFYT 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AG++PIIG    +        T+  K        I L      GY+ +I L+SR +
Sbjct: 61   AAQNAGVKPIIGADFWM-------RTSGDKENSDKPTLISLYAMNHVGYRNIILLISRAF 113

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
               Q      I   W+ E  +EG+I L+GG  G I  A   +    A   L  +K  F D
Sbjct: 114  QEGQYHGDPYILREWISEC-SEGVIALSGGRQGDIGVALLSDHRDEAMAYLEGWKADFPD 172

Query: 181  RLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R Y+ LQR  R  +       V LA   ++P+VATN+  FL   D+EAH+  + +     
Sbjct: 173  RFYLELQRTGRENEEDYLHAAVALASEQQIPVVATNDVRFLVGSDFEAHESRVCIGEGRT 232

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +    R    +   YL+   EM  +FSD+P+AL NTVEIA+RC+  +++    LP F   
Sbjct: 233  LDDPRREHRYSDQQYLRTPEEMAELFSDIPQALANTVEIAKRCTVDIELGNYYLPDFPIP 292

Query: 299  E---------------------------CDDIQKEEENELR---------NKAVAGLEVR 322
            +                             + +KE    L            +  GL  R
Sbjct: 293  DNFRKDPFFEAHYPYATLEGFAQQAMEEKWEEKKETPEYLAMVETNVFFQKVSYEGLFER 352

Query: 323  LAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            L      +    +D    Y  RL FEL++I +M F GYFLIV DFIQWAK  +IPVGPGR
Sbjct: 353  LETILDKEDNDYKDKKQPYLDRLRFELDIIMQMGFPGYFLIVMDFIQWAKDQDIPVGPGR 412

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GSGAGS+ AYA  ITD+DPL + LLFERFLNP+R+SMPDFDIDFC D RD+VI+YV + Y
Sbjct: 413  GSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDNRDQVIKYVSDTY 472

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G + V+QIITFG++ AKA +RDV R     Y   D+L K+IP D    +  +A   +   
Sbjct: 473  GKDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPMDVGITLQ-KAFDQEEPL 531

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
            RE    D     + E+S KLEG+ R+   HA G+VI    L+   P++ D      VTQ+
Sbjct: 532  REFLDGDEEAQEIWEMSLKLEGITRNVGKHAGGVVIAPTKLTDFSPLFCDETGKGLVTQY 591

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL---------AQRGVKVDLSLIPFDDHETY 609
            +   +E AGL+KFDFLGL+TLT++  ++  +         A     +D++ IP DD  TY
Sbjct: 592  DKNDVESAGLVKFDFLGLRTLTIIDWAVKMINATRKKAAGANSHQVLDIAFIPLDDPATY 651

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNG 667
             +L T  T  +FQLES GM+  ++ +QPD IED+ ALV+L+RPGP+ + +V  + NRK+G
Sbjct: 652  RMLKTAETTAVFQLESRGMKDLIKRLQPDDIEDLTALVALFRPGPLQSGMVDDFINRKHG 711

Query: 668  KEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            + ++        H  + P+L  T GVI+YQEQVMQIAQ L+GY+L  AD+LRRAMGKK  
Sbjct: 712  RAEVAYPDAKYQHDKLKPILGPTYGVIVYQEQVMQIAQELAGYTLGGADMLRRAMGKKKP 771

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EEM KQ+  F  GA   GI  T+A+ IF+L+ KFA YGFNKSH+AAYAV+SYQTAW+KTH
Sbjct: 772  EEMAKQRAVFEGGAKDQGIDPTLAIKIFDLVEKFAGYGFNKSHSAAYAVVSYQTAWLKTH 831

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
            YP +F+AA+M+ +MD  EK+  F ++ R   + ++PP VN     F V  DN I Y L A
Sbjct: 832  YPAQFMAATMSSDMDKTEKVVIFVEECRSMKLNLLPPDVNQGDFQFTVDIDNNIIYGLGA 891

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY----- 896
            IKG+G     +I+EA    PF +L DFCSRVD++K+N+R L++LV +G+ D  G      
Sbjct: 892  IKGLGEGPVENIIEARKSGPFKNLFDFCSRVDARKVNKRALDALVRSGSFDTIGPDGDNP 951

Query: 897  ------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV----- 945
                  +R  LL +L    K A     N+     ++F        D+      S      
Sbjct: 952  ERDLDMTRAILLAALPEAVKTADQALANQNAGMVDLFGDSLLGQGDENEDPYESFYRTRR 1011

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                 R   E   +G Y +GHP+D Y+  ++ +        VA      I++A +VV+ +
Sbjct: 1012 WTMKERLNGENDTIGLYLTGHPIDEYEDEVKHLVSSRISRIVADR--KTIKIAGLVVAMR 1069

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              KT++G  +G++T  +     E   F
Sbjct: 1070 VMKTKRGDTMGFITLDDRTARMEVAVF 1096


>gi|114327944|ref|YP_745101.1| DNA polymerase III subunit alpha [Granulibacter bethesdensis CGDNIH1]
 gi|114316118|gb|ABI62178.1| DNA polymerase III alpha subunit [Granulibacter bethesdensis CGDNIH1]
          Length = 1143

 Score = 1056 bits (2731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 495/1033 (47%), Positives = 654/1033 (63%), Gaps = 26/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL+VHS+YSL EGA+  + I         PA+A+TD+ NLF  LEFSQ     G+QP
Sbjct: 5    NFVHLRVHSAYSLSEGAIKTDKIPALARQMAMPAVAMTDSGNLFGILEFSQACAGKGVQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGCQ+ +   +  +              +VLL     G   +  L S  +L  +     
Sbjct: 65   IIGCQIGLARPEQQQRLPPD--------QLVLLARDEAGLANIQRLSSLGFLQGEPGAKP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            ++ L  +     EG+++LTGG+SGP+ R         AE+ L   K+ F DR  + L RH
Sbjct: 117  QLPLETIL-AHAEGVMLLTGGTSGPLARLLAEGQKGEAERLLAVLKEAFPDRTVIELHRH 175

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                ++  E  ++ LA    LPLVATN+  F   + YEAHD L+ +A   V+S+ DR RV
Sbjct: 176  GLRLEKAIEPGLIALADAAGLPLVATNDCYFAQPDMYEAHDALLCIAEGRVLSETDRRRV 235

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            TPDH+ K    M ++FSDLPEA +NT+ IAR C  + +   P+LP   +       + E+
Sbjct: 236  TPDHWFKPPEMMRALFSDLPEACDNTIAIARSCVVMAETRKPLLPVCPKVHE---GQTED 292

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              +R  AV GLE R  +   A       YR+RLD+EL+VIARM F GYFLIVADFIQWAK
Sbjct: 293  ETVRAMAVEGLERR-MEDVGAGPEDRARYRERLDYELDVIARMGFPGYFLIVADFIQWAK 351

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N+IPVGPGRGSGAGSV A+ALTITD+DPLRF+LLFERFLNPDR+SMPDFDIDFCQDRRD
Sbjct: 352  ANDIPVGPGRGSGAGSVVAWALTITDLDPLRFNLLFERFLNPDRISMPDFDIDFCQDRRD 411

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV+ +YG +RVAQIITFG LQAKAA+RDVGR L MP+ QV+++ +LIPN+PA P +
Sbjct: 412  EVISYVRGEYGGDRVAQIITFGKLQAKAAVRDVGRVLGMPFGQVNKVAELIPNNPAKPPT 471

Query: 489  LQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            LQ AI  + R ++ R +D +V RLLEI+ ++EGLYRHASTHAAG+VIGDRPL +LVP+YR
Sbjct: 472  LQEAIDGEPRLQQMRESDEAVKRLLEIALQIEGLYRHASTHAAGVVIGDRPLVELVPLYR 531

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D +SD  VTQF+MK +E AGL+KFDFLGL TLT+LQ+++ FLA  GV VDL+ +P DD  
Sbjct: 532  DPKSDFLVTQFSMKHVENAGLVKFDFLGLTTLTILQRAVKFLAGLGVSVDLAHVPLDDER 591

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L      G+FQ ES GMR  L  M+PD  ED+IA V+LYRPGP+ NI  Y  RK+G
Sbjct: 592  TYQMLQRGDAGGVFQFESQGMRDVLRQMRPDRFEDLIAAVALYRPGPMANIPAYCQRKHG 651

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E     H  I  +L ET G+++YQEQVMQIAQ L+GYSL  AD LRRAMGKKI+ EM+ 
Sbjct: 652  -EAWEPPHEDIRDILGETYGIMVYQEQVMQIAQKLAGYSLGAADSLRRAMGKKIRAEMET 710

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +  F  GASK GI    +  IF+L+ KFADYGFNKSHAAAYA+++YQTA+MK +YP  F
Sbjct: 711  HRSIFAEGASKRGIPDAKSGEIFDLMVKFADYGFNKSHAAAYALVAYQTAYMKANYPEPF 770

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAI 842
            LAA M+L ++N +K+    Q+A +  I ++PP +N    DF+V     G   I Y+LAAI
Sbjct: 771  LAACMSLAINNTDKLAALRQEATRLGISVLPPDINCSAADFRVEQREDGRLAIRYALAAI 830

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            K VG +    ++ A  ++ F  L DF +RVD ++LNR  +E+L  AGA D    +R  + 
Sbjct: 831  KRVGLSAMEAVVAARGEQAFTDLADFAARVDPRQLNRMQIENLARAGAFDSLVPNRAAVH 890

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             + D I + AQ   + + +    +FA       + + L          R   E   +GF+
Sbjct: 891  GAADMILRRAQAASEEKNSGQIGLFAGAGT--PEPLRLPSCPDWPDMERLSFEAEAIGFH 948

Query: 963  FSGHPLDVYKPILRKMGIKGYE--ESVATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             + HPLDVY   L+K+ +      E  A   G   +RLA  VV+ +++ TR GSR+ WV 
Sbjct: 949  LTAHPLDVYTVTLQKLRVLPSNRIEEHAARHGDQRVRLAGCVVNAKERTTRTGSRMAWVR 1008

Query: 1020 FSEPAKEYEANFF 1032
             S+    YE   F
Sbjct: 1009 LSDAGGSYEITVF 1021


>gi|300114836|ref|YP_003761411.1| DNA polymerase III subunit alpha [Nitrosococcus watsonii C-113]
 gi|299540773|gb|ADJ29090.1| DNA polymerase III, alpha subunit [Nitrosococcus watsonii C-113]
          Length = 1158

 Score = 1056 bits (2731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 434/1045 (41%), Positives = 620/1045 (59%), Gaps = 36/1045 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +PSFVHL++H+ YSL++  + +  ++        PAIA+TD +N+F+ ++F + A AAG+
Sbjct: 2    APSFVHLRLHTEYSLVDSLVRIRPLIQATREAGMPAIAVTDQSNVFAMIKFYRAAQAAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG  + +           G           LL     GY+ L  L+SR Y   Q + 
Sbjct: 62   KPIIGADIFLA----------GSGERSRASRFTLLCQNELGYRHLSGLLSRAYREGQYQG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+   WLQ +  +GLI+L+GG  G + +A    +   A + L  ++ LF  R Y+ L 
Sbjct: 112  IPRLQWDWLQNL-NDGLIVLSGGREGDVGQALLSGNDIQAGRLLERWQALFPGRYYLELH 170

Query: 188  RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            R     +       V LA  ++ P+VATN+  FL  +D+EAH+  + +     ++   R 
Sbjct: 171  RTGREGEEDYLHAAVALALAYDTPVVATNDVRFLRPQDFEAHEARVCIHEGRALNDPRRS 230

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               +   YL+  SEM  +F DLPEALENTVEIARRC+  L +    LP F   E      
Sbjct: 231  RHYSEQQYLRTPSEMAELFVDLPEALENTVEIARRCNLELTLGKYYLPNFPVPE----DW 286

Query: 306  EEENELRNKAVAGLEVRLAQGAI---AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E  L  +A  GLE RLA+       +      Y  RL  EL VI +M F GYFLIVAD
Sbjct: 287  SIEAFLAAEARQGLEQRLAKLYPLETERKAEQSAYEARLAEELAVINQMGFPGYFLIVAD 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAKKN IPVGPGRGSGAGS+ AYAL ITD+DPL F L+FERFLNP+R+S+PDFDIDF
Sbjct: 347  FIRWAKKNEIPVGPGRGSGAGSLVAYALQITDLDPLAFDLIFERFLNPERVSLPDFDIDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RRD VI YV   YG + V+QIIT+G++ AKA +RDVGR L  PY  VD++ KLIP D
Sbjct: 407  CMERRDWVIDYVSQHYGRDHVSQIITYGTMAAKAVVRDVGRVLGHPYGFVDQIAKLIPFD 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+A+    R     +  V  L+++++KLEGL R+A  HA G+VI  + L++ 
Sbjct: 467  LKMTLD-KALAESEGLRSRYEGEEEVQFLVDLARKLEGLIRNAGKHAGGVVIAPKKLTEY 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
            VP Y +  +   VTQF+   IE  GL+KFDFLGL+TLT+L  +L  + ++  +      D
Sbjct: 526  VPYYCEQGASGVVTQFDKDDIETIGLVKFDFLGLRTLTILDWALQAINRQRTQQGETLLD 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+L+P DD ++Y LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+ +
Sbjct: 586  LALLPMDDSKSYGLLKRCATTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQS 645

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  Y NRK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+GY+L EAD+LRR
Sbjct: 646  GMVDDYINRKHGRAQVDYPHPALEPILKPTYGVIVYQEQVMQIAQVLAGYTLGEADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ+  F +GA    + +  A  IF+L+ KFA+YGFNKSH+AAYAVI+YQ
Sbjct: 706  AMGKKKPEEMAKQRAIFTAGAKAREVDEKKATAIFDLMEKFAEYGFNKSHSAAYAVIAYQ 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834
            TA++K HYP  ++AA ++ +MDN +K+K F ++     + ++PP VN     F   G+  
Sbjct: 766  TAYLKAHYPASYMAAVLSADMDNTDKVKAFVEECWAMKLDLLPPDVNASNYLFSAQGETA 825

Query: 835  IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L AIKGVG      I++A      + +L +FC R+D +K++RRVLE+LV AGALD 
Sbjct: 826  IRYGLGAIKGVGAAALEGIIKAREQHGLYQNLFEFCRRIDLRKISRRVLEALVRAGALDS 885

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRF 952
             G +R  L  SL+     A+   +N +    ++F  +  +   +  +  +    +   R 
Sbjct: 886  LGANRATLEASLEAALALAEQHCRNASLGQNDLFGLDLVSEDKEAGSYVETKEWDEEQRL 945

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-----NIRLAAMVVSKQQK 1007
              E+  LG Y SGHP+D YK  L+++      E +            I +A +V S +  
Sbjct: 946  ALEKETLGLYLSGHPIDCYKQELKQIAPCRIAELIDRANNRQNRSQQIMIAGLVGSVRTN 1005

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
            K R+G R  ++T  + +   E   F
Sbjct: 1006 KARQGGRNAFITLEDGSARLEIKAF 1030


>gi|311105199|ref|YP_003978052.1| DNA polymerase III subunit alpha 1 [Achromobacter xylosoxidans A8]
 gi|310759888|gb|ADP15337.1| DNA polymerase III, alpha subunit 1 [Achromobacter xylosoxidans A8]
          Length = 1164

 Score = 1056 bits (2731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1053 (38%), Positives = 609/1053 (57%), Gaps = 45/1053 (4%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + +   P FVHL+VHS +S+++G + + +++ ++A   QPA+A+TD +NLF  ++F + A
Sbjct: 4    EAVTTPPPFVHLRVHSEFSVVDGLVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYKGA 63

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              AGI+PI GC + +   D+                ++LLV   +GY  L EL+S+ +L 
Sbjct: 64   RGAGIKPIAGCDVWLSNDDDP----------AKPFRLLLLVRNHQGYLNLCELLSKAFLT 113

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +QGK    I   WLQ  G EGLI L+GG  G + +A    ++  A      +  LF    
Sbjct: 114  NQGKGRAEIRREWLQ--GQEGLIALSGGRGGDVGQALDAGNAVSALALARQWAHLFPGSY 171

Query: 183  YVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ LQR     D       ++LA    LP+VAT+   FL E +++AH+  + +A   +++
Sbjct: 172  YIELQRAGMDGDEAYTQAALRLASEAGLPVVATHPVQFLDEFEFQAHEARVCIAEGEILA 231

Query: 242  QKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R  R + + YL +  EM   F+D+P AL NTVEIA+RC+  L +  P LP F   E 
Sbjct: 232  NPRRVRRFSKEQYLLSSEEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFPTPEG 291

Query: 301  DDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
              +    ++ L   +  GLE R   L   A  +    + Y +RL +E   I +M F GYF
Sbjct: 292  VGL----DDYLVQLSEEGLEKRMEFLFPDAAERESKREQYYERLRWECKTIIQMGFPGYF 347

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SMPD
Sbjct: 348  LIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMPD 407

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQD R+ VI YV+ KYG   V+QI TFG+L AKA +RD GR L MPY   D L K
Sbjct: 408  FDIDFCQDNRERVIDYVKEKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGLSK 467

Query: 478  LIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +P  P +L+  + D+  F++    +  V  L+++++ LEGL R+   HA G++I  
Sbjct: 468  LIPFNPMDPWTLERTLKDEPAFKDRYEQEEEVRALVDLAKPLEGLTRNIGMHAGGVLIAP 527

Query: 537  RPLSQLVPMYRDVR-SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---R 592
              L+   P+Y      +  V+QF+   +E AGL+KFDFLGL+ LT+L  ++ ++ Q    
Sbjct: 528  GKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNED 587

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                D+  +  DD   Y +L    T  +FQLES GM++ L+ ++P+  EDIIA+++LYRP
Sbjct: 588  KRDFDVMALALDDPAAYKILCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALYRP 647

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+++ +V  + NRK+G+  +   H  ++  LK T GVI+YQEQVM I+Q++ GYSL  A
Sbjct: 648  GPLESGMVDDFVNRKHGRAAVDYFHNDLESTLKSTYGVIVYQEQVMLISQIIGGYSLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM K +E F  GA + G    +AV +F+L+ KFA YGFNKSH+AAYA
Sbjct: 708  DLLRRAMGKKKPEEMAKHRELFEQGAKEKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYA 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +ISYQTAW+K ++P EFLAA+M+ +MD+ +K++ FC+DA+   ++++PP VN     F+ 
Sbjct: 768  LISYQTAWLKAYHPTEFLAATMSSDMDDTDKVQIFCRDAQDNGVEVLPPDVNFSGYRFEP 827

Query: 831  GDNR----------IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNR 879
              ++          + Y L A+KG G      I+ A  +  PF +L DFC RV  + +NR
Sbjct: 828  VVDKHTKNGKPPRTMRYGLGAVKGTGQGAVEDILRARKEGGPFLNLFDFCRRVSKQAVNR 887

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R +E+L+ AGA D    +R  +L S+    + A+     R+    ++F  + G       
Sbjct: 888  RTIEALIKAGAFDTIEPNRAAMLASVPTAMEAAEQA--ARSANQASLFGDDSGDVVAG-E 944

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
            L K +  +   +   E+  LG+Y+SGH  D ++  +R++                  +  
Sbjct: 945  LAKVAPWDLHKKLTEEKSALGYYYSGHLFDAWRDEVRRIVPMQLVRVEPQRDLQW--MCG 1002

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++ S +   TR+G  + +    +   + E + F
Sbjct: 1003 VLASVRVMMTRRGK-MVFAVLDDGTAQVEISVF 1034


>gi|220931162|ref|YP_002508070.1| DNA polymerase III catalytic subunit, DnaE type [Halothermothrix
            orenii H 168]
 gi|219992472|gb|ACL69075.1| DNA polymerase III catalytic subunit, DnaE type [Halothermothrix
            orenii H 168]
          Length = 1122

 Score = 1056 bits (2730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1037 (35%), Positives = 607/1037 (58%), Gaps = 36/1037 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + +FVHL VH+ YSLL+GA+ L +++ K      P +AITD   L+ A++F + A   GI
Sbjct: 2    TANFVHLHVHTEYSLLDGAIRLKDLVKKTKEYDMPGVAITDHGVLYGAIDFYKLARQYGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC++ +      K   + +        ++L+    EGY  L ++VSR +L      
Sbjct: 62   KPIIGCEVYLTPSSFRKKDTRER------YHLLLIAQNREGYHNLTKIVSRSWLEG-FYY 114

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
              R+    L +   +GLI L+    G I +    +  Q AE+ +  ++ +F  +  Y+ L
Sbjct: 115  KPRVDKDLLYQ-HRKGLICLSSCLQGEIPQLILKDRLQEAEQAIKEYEAIFGRESFYLEL 173

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H  G ++   S++++L+     PLV TN+S +L+ ED   HDVL+A+     ++ ++R
Sbjct: 174  QDHNLGDEKLVNSRLIELSNKLGTPLVVTNDSHYLNREDASLHDVLLAMQTGKTINDENR 233

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               T +  Y K+  EM S+F D+ +   NTV+IA         +   +P F + + D   
Sbjct: 234  LSFTGEEFYFKSPDEMKSLFPDIEDTYLNTVKIAEMTDIDFDFNTFYIPDFPDAKGD--- 290

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K     LR+K   GL+ +  +         ++ R+RL +EL +I  M +  YFLIV DF+
Sbjct: 291  KTPVEILRDKCQQGLKEKGLEDN-------KEARERLQYELEIIEEMGYVSYFLIVWDFV 343

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A++  I VGPGRGS AGS+ +Y L IT I+PL++ L+FERFLNP+R++MPD DIDF  
Sbjct: 344  NFARQKGIRVGPGRGSAAGSLVSYLLGITKINPLKYGLIFERFLNPERVTMPDIDIDF-D 402

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDE+I YV+ +YG E+VAQI TFG++ A+AA+RDVGR L +P  +VDR+ K++P    
Sbjct: 403  ERRDEIIEYVKQRYGREKVAQIGTFGTMAARAAIRDVGRVLDIPLRKVDRIAKMVPGRVT 462

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 +A+  +    +    D  V RLL+ + ++EG+ RH STHAAG++IG   LS ++P
Sbjct: 463  IK---EALKMNDNLNKLYQQDSEVKRLLDYACRVEGMPRHISTHAAGVIIGPGDLSNIIP 519

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +    + +  +TQF+M+ +E+ GL+K DFLGL+ LT++ K+L+ +++R   ++D+  IP 
Sbjct: 520  LQ--TQDENIITQFHMENLEELGLLKMDFLGLRNLTIINKTLNLISKRYGREIDVDNIPL 577

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            +D   Y +L    T G+FQ+ES   +     ++P+   D+IAL++L RPGP+ + +V  Y
Sbjct: 578  NDDRVYKMLQEGKTPGVFQMESRLFQDLNRRLKPEKFSDLIALLALGRPGPLGSNLVEQY 637

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               ++G+ +   +HP ++P+L+ET G+I+YQEQVM+IA  L+GY++ EAD+LRR MGKK 
Sbjct: 638  IKSRHGEIEPSYLHPELEPILEETFGLILYQEQVMEIASKLAGYTMGEADLLRRGMGKKK 697

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            KE + K++ERF+ GA KNGI K +A  IF+ +  FA YGFNKSH+ AYA+++YQTA++K 
Sbjct: 698  KELISKERERFVEGAVKNGIEKEVAHKIFDQMEYFAGYGFNKSHSTAYAMLAYQTAYLKA 757

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLA 840
            +YP EF+AA ++  M+N++K+ ++ ++ ++  ++++PP VN    +F+   +    + L 
Sbjct: 758  NYPSEFMAALLSTVMNNLDKVGQYIRECQEMGLRVLPPDVNRSGFEFETTPDGDISFGLK 817

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AIK VG      I+E    +  + SLEDF  RVD+ ++N +V+ESL+ AG  D F   R 
Sbjct: 818  AIKNVGIKAIEAIIEERNRNGNYSSLEDFIERVDTGRVNLQVIESLIKAGVFDSFNTYRS 877

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKH---ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            Q+L   + I +      +NR        ++F+ ++  ++  I   +        R   E+
Sbjct: 878  QMLIKYEEIYEKLGSRSRNRAQGQTSFFDLFSEDEKFYNQSIEYPEIEELPLEERLNQEK 937

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LG Y S HPLD +K  +    I    + +    G+ + +  +VV  ++  TR   ++ 
Sbjct: 938  EYLGIYLSAHPLDPFKDKIDHF-ISTTSQDIKDYEGDKVTIGGVVVDFKEHITRTNKKMA 996

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++T  +     +   FP
Sbjct: 997  FLTLEDWLGNIKVVVFP 1013


>gi|123968448|ref|YP_001009306.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str.
            AS9601]
 gi|123198558|gb|ABM70199.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str.
            AS9601]
          Length = 1165

 Score = 1055 bits (2729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1048 (36%), Positives = 606/1048 (57%), Gaps = 36/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  ++ I+++       +IA+TD   ++  L+  +K    GI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQISKIVERACDLGMDSIALTDHGVMYGVLDLVKKCKEKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          + +  +     +V+L     GY+ L++L +  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPKKEKRY----HLVVLAKNYTGYKNLVKLTTISHLNGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I  S L +  ++GLI+ T    G I +A       VAE   L +KKLF D  Y+ 
Sbjct: 118  FSRPCIDKSLLSKY-SDGLIVSTACLGGEIPQAILKGRLDVAEDIALWYKKLFADDFYLE 176

Query: 186  LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    +++++   H++ ++ATN++ +LS  D EAHD L+ V    ++S + 
Sbjct: 177  IQDHGSIEDRIVNVELIKIGKKHQIKVIATNDAHYLSSMDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   Y+K+ +EM+ +F D      + +A+ NTVEI+++           +P+F   
Sbjct: 237  RLRYTGTEYIKSENEMLELFKDHIDDKSIIDAVNNTVEISQKVEVFDLFGNYRMPKFPLN 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E     K+  + L+  +  GL  RL +  +      + Y++RL  EL +I  M F  YFL
Sbjct: 297  E----DKDSFSFLKQLSNKGLLKRLKKNDLD--EVDEKYKERLTSELKIIKDMGFPDYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP R SMPD 
Sbjct: 351  VVWDYIKFARDNSIPVGPGRGSAAGSLVAYALQITNIDPVEHGLLFERFLNPARKSMPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC DRR+EVI YV N+YG ++VAQIITF  + +KA L+DV R L +PY + D+L KL
Sbjct: 411  DTDFCIDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADKLAKL 470

Query: 479  IPNDPAHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L  + D       FR+  + D  + + ++++ ++EG  +    HAAG+VI
Sbjct: 471  IPVVRGKPYKLNEMIDKNSPSQEFRDKYINDNRIKKWVDLALRIEGTNKTYGVHAAGVVI 530

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               PL +LVP+ R+      +TQ++M  IE  GL+K DFLGLK LT+++K++  + Q   
Sbjct: 531  ASDPLDELVPLQRN-NEGQIITQYSMDDIESLGLLKMDFLGLKNLTMIEKTVSLVNQSSG 589

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             K+++  +P +D +T+ L+      GIFQLESSGM+Q ++  +P+ +EDI ++++LYRPG
Sbjct: 590  KKINIDELPRNDSKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALYRPG 649

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRKNG EKI   HP I  +L ET G+++YQEQ+M+IAQ L+GYSL +AD
Sbjct: 650  PLDAGLIPKFINRKNGNEKIDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSLGDAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM K +  F+ G+ K G+++ +A ++F+ +  FA+Y FNKSH+ AY  
Sbjct: 710  LLRRAMGKKKVSEMVKHRNIFVEGSMKKGVNEKLANDLFDQMVLFAEYCFNKSHSTAYGA 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K H+PV ++AA +++   + +K++++  +     I+++ PS+N   VDF + 
Sbjct: 770  VTYQTAFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMGIEVISPSINFSGVDFTIK 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            +N+I + L+AIK +G +  R+I+E       F SL D C R+ S  LN+R LESL+  GA
Sbjct: 830  NNQILFGLSAIKNLGDSAIRNIIENRNSLGIFKSLADLCDRLPSNVLNKRSLESLIHCGA 889

Query: 891  LDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG---TFSDKITLEKFSV 945
            LD F    +R QLL  L+N+ ++A    ++R +   N+F  ++           L K   
Sbjct: 890  LDEFSIDNNRAQLLSDLENVIEWASSRNRDRLSGQGNLFDSKEEFSNVAFSDSQLAKVED 949

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +   + + E+++LGFY S HPL       + +          T     + L  M+   +
Sbjct: 950  YSLIEKLKLEKQLLGFYLSDHPLKHLTKPAKLISPISISHLEETKDRTKVSLVGMIPDLK 1009

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q  TRKG R+  V   + +   EA  FP
Sbjct: 1010 QITTRKGDRMAIVQLEDLSGSCEAIVFP 1037


>gi|308274799|emb|CBX31398.1| DNA polymerase III subunit alpha [uncultured Desulfobacterium sp.]
          Length = 1179

 Score = 1055 bits (2728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1033 (39%), Positives = 604/1033 (58%), Gaps = 20/1033 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YSLL+GA+   ++ +++      ++AITD  ++F ALEF   A    I+P
Sbjct: 8    PFVHLHVHTQYSLLDGAIRFKHLFNRVRDFGMDSVAITDHGSMFGALEFYLNATDNNIKP 67

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  +  +   K+T++       +  ++LL    EGY+ L +L S   L        
Sbjct: 68   IIGCECYLAPR---KLTDKTSQDGKRLSHLILLAENNEGYRNLCKLASIAQLEG-FYYKP 123

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI    LQ+  + GLI L+    G I       + + A+     ++ LF  +  Y+ LQ 
Sbjct: 124  RIDKEVLQKY-SRGLIALSACLHGEIPMLIGEGNIKEADNAARFYQGLFGENNFYLELQN 182

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +    +      +V +     +PLVATN+  +L++ED  AH++L+ +     V      +
Sbjct: 183  NGMEIQNKINEALVDMGNRLSIPLVATNDCHYLNKEDARAHEILLCIQTGKTVQDPSHFK 242

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  Y K+  EM + F+  P+A++NT +IA+RC+  +  +    P +   E +     
Sbjct: 243  FETDQLYFKSGEEMNNFFASTPDAIKNTADIAKRCNIDMDFNNYHFPLYTAIEGN----T 298

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            E+  L  K + G E   A+         ++ YRQRL  E++VI  M F GYFLIVADFI+
Sbjct: 299  EQELLEQKVLHGFERVFAKIKSKNPAIDENLYRQRLKHEMSVIISMGFPGYFLIVADFIK 358

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK NNIPVGPGRGS AGS+ AY+L IT++DP+   L+FERFLNP R SMPD D+DFC +
Sbjct: 359  YAKDNNIPVGPGRGSAAGSLVAYSLGITNLDPIEHGLIFERFLNPARKSMPDIDVDFCIN 418

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD+V++YV  KYG  RV+QI TFGS++ +A +RDVGRAL +P  ++D + K+IP+    
Sbjct: 419  GRDKVLKYVVEKYGENRVSQITTFGSMKTRAVIRDVGRALDIPLREIDEIAKMIPDVLNI 478

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +   A+  + R  E       +  L+ I + LEGL RHASTHAAG+VI D+PL + +P+
Sbjct: 479  SLD-DALTQEPRLSELARQRSDIAELITICRTLEGLTRHASTHAAGVVISDKPLDEYLPL 537

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604
            YR    +L VTQF+MK +EK GL+KFDFLGL+ LT++  +L  +  Q     D+  +   
Sbjct: 538  YRGKNGEL-VTQFDMKRVEKIGLVKFDFLGLRNLTVIANTLSLISKQGNSPPDIDSLDLT 596

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
            D  TY LL    T G+FQLES GM++ L+ ++P+  EDI ALV+LYRPGPI++ +   Y 
Sbjct: 597  DQATYRLLAEGNTTGVFQLESKGMKELLKRVRPENFEDITALVALYRPGPIESGMIDDYV 656

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G++ +  + P ++P+LKET GVI+YQEQVM+IA +++GYS++EAD LR+AMGKKI 
Sbjct: 657  ERKHGRKSVEYLVPELEPILKETYGVIVYQEQVMKIAGVIAGYSMAEADDLRKAMGKKIV 716

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E M  Q+ERF+SGA+ NG+ K  A  +F L+ KF  YGFNKSH+AAYA+I+YQTA++KTH
Sbjct: 717  EIMAAQRERFVSGATANGVPKEKADTLFSLIDKFGGYGFNKSHSAAYALIAYQTAYLKTH 776

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            Y VEF+A+ +T EM + + + K+  +     + ++PP +N    DF V D  I + L A+
Sbjct: 777  YQVEFMASLLTSEMGSTDSVVKYISECSSNGVSVLPPDINESDRDFSVSDRNIRFGLVAV 836

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            K VG      ++E      F SL +FC RVD KK+N+RV+ESL+  GA D  G  R +++
Sbjct: 837  KNVGENAIEAVIETRNKDKFTSLFNFCERVDLKKVNKRVIESLIKCGAFDSTGTFRSRMM 896

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
              LD+  +Y Q V++ + +    +F    E  +F D   + +    N       E+  LG
Sbjct: 897  AILDDAVEYGQRVQREKNSPQIGLFGEMTENESFQDIPRIPEIDEWNEKELLAFEKEYLG 956

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY +GHPL+ YK ++ K              G   R   ++ + +  KTRKG  + +V  
Sbjct: 957  FYITGHPLNKYKELIAKYTNTDSLAIKDMNDGEIARFGGIITNIKIIKTRKGDDMAYVVT 1016

Query: 1021 SEPAKEYEANFFP 1033
             +     E   FP
Sbjct: 1017 EDMIGSIETTVFP 1029


>gi|159045497|ref|YP_001534291.1| DNA polymerase III subunit alpha [Dinoroseobacter shibae DFL 12]
 gi|157913257|gb|ABV94690.1| DNA polymerase III subunit alpha [Dinoroseobacter shibae DFL 12]
          Length = 1164

 Score = 1054 bits (2727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 499/1053 (47%), Positives = 683/1053 (64%), Gaps = 43/1053 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL++H+ YSLLEGA+ L  + D +AA + PAIAITDTNN+F+ALE S+    
Sbjct: 1    MTQPPRFIHLRLHTEYSLLEGAMRLKKLPDLVAAAEMPAIAITDTNNMFAALEASEALSK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPIIGCQ+D+           G+ P    P +VLL  T  GY+ L+ L + +Y+ D+
Sbjct: 61   AGIQPIIGCQVDVA----FDPAAPGERPRAPAP-VVLLAQTEAGYENLMALNTCLYV-DK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q  +I +  L   G+  LI LTGG  GP+ R         A+  +    ++FGDRLYV
Sbjct: 115  GGQLPQITVEELAANGS-DLICLTGGPRGPLGRFLSAGQRPKAQALMARLAEIFGDRLYV 173

Query: 185  NLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
             L RH G       E   + LAY   LPLVATN+  F     YEAHD L+ +A    V Q
Sbjct: 174  ELHRHPGDPLCAETEPGFLDLAYDMNLPLVATNDVYFPDPGMYEAHDALICIAEGAYVDQ 233

Query: 243  -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
               R R+T  HY K+++EM ++F+DLPEALENT+EIARRC+F      PILPRF E E +
Sbjct: 234  QAPRRRLTDQHYFKSQTEMATLFADLPEALENTIEIARRCAFKAFKRDPILPRFAEDEVE 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                    ELR ++  GL+ RLA   I      ++Y +RL+FEL++I  M F GYFLIVA
Sbjct: 294  --------ELRRQSREGLKARLA--VIPHAAPVEEYEKRLEFELDIIEGMGFPGYFLIVA 343

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK   IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDID
Sbjct: 344  DFIKWAKDRGIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERISMPDFDID 403

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRR+EVI YVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL K+IP 
Sbjct: 404  FCMDRREEVIHYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKMIPV 463

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   PVS+ +A+ D+ R  E   A+  V+RLL+   ++EGL R+ASTHAAG+VIGDRPL 
Sbjct: 464  EGVKPVSIEKALKDEPRLAEEAKAEEVVERLLKYGMQVEGLLRNASTHAAGVVIGDRPLD 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG------- 593
            +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT+++ ++  +   G       
Sbjct: 524  KLVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIENAVKLIRATGRDLHVAA 583

Query: 594  -----------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
                        + D++ IP DD  +Y L  +  T+ +FQ+ES+GM  AL  M+P CIED
Sbjct: 584  DGTELYSPAPGTENDINAIPLDDEASYKLYASAKTVAVFQVESTGMMDALRRMKPTCIED 643

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            IIALV+LYRPGP++NI  Y   KNG  +   +HP +D +L ETQG+I+YQEQVMQIAQ +
Sbjct: 644  IIALVALYRPGPMENIPKYCEVKNGLSERDLLHPTVDHILDETQGIIVYQEQVMQIAQEM 703

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +GYSL  AD+LRRAMGKKI+E MD ++ +F++GA++NG+ K  A+ ++ LL KFA+YGFN
Sbjct: 704  AGYSLGGADMLRRAMGKKIQEAMDAERPKFLAGAAENGVDKDKALEVWHLLDKFANYGFN 763

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821
            KSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R+   ++I+PP V
Sbjct: 764  KSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYAEEVRRGLGLEIVPPCV 823

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
            N     F V + ++ Y L A+K VG      ++    DKPF +L D   RVD K++ +R 
Sbjct: 824  NRSRASFSVAEGKLVYGLGALKNVGADAMELVVTGRGDKPFATLFDLARRVDLKRVGKRP 883

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE L  AGA D    +R ++ QSLD +  Y+  + + R +   ++F  E G    +  + 
Sbjct: 884  LEMLARAGAFDQLDPNRRRVFQSLDGLVAYSAAIHEQRASAQVSLFG-EAGEDLPEPRIL 942

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAA 999
                   + R   E + +GFY SGHPLD Y   L++ G+   E     +  G  + ++A 
Sbjct: 943  PCDDWLPAERLAEEHKAIGFYLSGHPLDDYMGALKRKGVVTLEALARKVETGAAVAKIAG 1002

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +  +Q++K+ +G+R  +V  S+P   YE   F
Sbjct: 1003 TIAGRQERKSARGNRFAFVQASDPTGLYEVTVF 1035


>gi|119953364|ref|YP_945573.1| DNA polymerase III subunit alpha [Borrelia turicatae 91E135]
 gi|119862135|gb|AAX17903.1| DNA polymerase III alpha subunit [Borrelia turicatae 91E135]
          Length = 1150

 Score = 1054 bits (2726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1035 (38%), Positives = 589/1035 (56%), Gaps = 23/1035 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++    FVHL VHS YSLL+GA  + +I+ K        IA+TD  NLF A++F ++A  
Sbjct: 1    MDLKVKFVHLHVHSDYSLLDGAAKITDIVAKAKKCNMSHIALTDHGNLFGAMKFYREAKG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +      K   +          ++ L     GY+ L++L S  YL   
Sbjct: 61   AGIKPIIGMEAYMSSTS--KHIKKNDELGRPYYHLIFLAKNELGYKNLLKLTSVSYLEG- 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    +++  +EGLI  +    G I +    N    A+  +L FK +FGD  Y+
Sbjct: 118  FYYRPRIDKEDIEKY-SEGLICTSACIGGIIPQLILANKFDDAKNEILWFKSVFGDDFYL 176

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH    +     ++V  +    + L  +N+S ++++ED  A D+++ +      S  
Sbjct: 177  ELQRHGIKQQDIVNEKLVAYSRELNVSLSVSNDSHYVNKEDATAQDIIVCIGTGAKRSDP 236

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRFIEKECD 301
            +R    T + YLK + EM  +F DLPEAL NT++IA +C+ F ++   PI P +      
Sbjct: 237  NRLKMETDEFYLKTQEEMCKLFRDLPEALANTLKIAEKCNEFEIKFPGPIFPEYQVPSEF 296

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D        L    + GL+ R A             + R  +EL+ I +M F  YFLIV 
Sbjct: 297  D---TLSQYLEYLTLEGLKFRYAN-------VTDSIKDRAFYELSTIIKMGFEAYFLIVW 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++A  N IPVGPGRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 347  DFIKFAHDNGIPVGPGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERVSMPDFDID 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RDEVI+YV  KYG ++VAQIITFG+L+ KA  +DVGR L +P+++ + L KLIP+
Sbjct: 407  FCFEGRDEVIKYVTRKYGEDKVAQIITFGTLKPKAVFKDVGRVLDIPFTESNELTKLIPD 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   VSL+ +  D   +         + L+E +  LEG+ R+ STHAAGIVI   PL+ 
Sbjct: 467  GPK--VSLREVFKDKALKAYLNKGVVYNELMEAALVLEGMNRYVSTHAAGIVIARTPLTD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
             VP+Y+D + +   TQ+ M  +E  GL+K DFLGLKTLTL++ + + +        ++ I
Sbjct: 525  YVPLYKDYKQNTVSTQYTMDLLEDCGLVKMDFLGLKTLTLIKNAENLIRITNPNFSIANI 584

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
               D +T+ +L+   +  +FQ ES GM+Q L   +PD IED+IAL +LYRPGP+  I  +
Sbjct: 585  SDSDVKTFKMLSEGRSASVFQFESEGMQQVLREAKPDSIEDLIALNALYRPGPMQFIPQF 644

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K G ++I   HP +  +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK 
Sbjct: 645  IAAKTGTKRIRYPHPDLKEVLKPTYGVIVYQEQVMEVARIIGGFSLGKADILRRAMGKKK 704

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            ++EM+K K  FI GA   G  +T+A +IFELL  FA YGFNKSHAAAY++I+YQTA++K 
Sbjct: 705  EDEMNKMKVDFIKGALSKGYDETLANDIFELLKPFAGYGFNKSHAAAYSLIAYQTAYLKA 764

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YP  F+AA++T E++N EK+  + ++A+   I ++ P +N    +F V    I Y L  
Sbjct: 765  NYPENFMAANLTNEINNTEKLSYYIEEAKSMGINVLKPDINQSFKEFSVVGLNISYGLNG 824

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK +G      I+ E   +  + S EDF  RVD K +N++ LE+ + +G  D  G +R  
Sbjct: 825  IKNIGGLIVDLIITERQENGEYKSFEDFIRRVDDKVINKKFLEAAIKSGLFDSLGQNRKT 884

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRV 958
            L ++LD +  +      ++     ++F     +           F   +       E+ +
Sbjct: 885  LFENLDKLIDFVIKDRNDKKLGQNSLFGSIGSQDAIQQSFNYHVFEEYSYPELLRFEREL 944

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGW 1017
            LGFY SGHPLD YKP L +       E +A  +   ++ A  +   +  +T++ + R+ +
Sbjct: 945  LGFYVSGHPLDHYKPELERFTNFNVLEDLAVKKDTTVKFAGSLNVVRVIRTKRNNARMAF 1004

Query: 1018 VTFSEPAKEYEANFF 1032
                +   E +   F
Sbjct: 1005 GVIEDFKGEMDIIVF 1019


>gi|257413195|ref|ZP_04742281.2| DNA polymerase III, alpha subunit [Roseburia intestinalis L1-82]
 gi|257204357|gb|EEV02642.1| DNA polymerase III, alpha subunit [Roseburia intestinalis L1-82]
          Length = 1162

 Score = 1054 bits (2726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1051 (34%), Positives = 581/1051 (55%), Gaps = 40/1051 (3%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            ++S SF HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F + A AA
Sbjct: 4    KQSMSFTHLHVHTEYSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYKAARAA 63

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+P++GC++ +          +          +VLL    +GYQ L+++VS+ ++    
Sbjct: 64   GIKPVLGCEVYVAPGSRFDR--ELSHGDDRYYHLVLLAENNQGYQNLMKIVSKGFVEG-Y 120

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYV 184
                R+ +  L+    EG+I L+   +G + R       + A++    ++K F     ++
Sbjct: 121  YYKPRVDMEVLETYH-EGIIALSACLAGEVQRYLVRGLYEEAKETACKYEKCFGKGNFFL 179

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ H   D+    + +++++    + LVATN+  +   ED E HD+L+ +     +S +
Sbjct: 180  ELQDHGIPDQKTVNAGLMRMSEETGIELVATNDVHYTYAEDAEPHDILLCLQTGKKLSDE 239

Query: 244  DRPRVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +R R     Y  K+  EM ++F    +A++NT +IA RC+  ++     LP F   E  D
Sbjct: 240  NRMRYEGGQYFVKSEEEMRALFPYAAQAIDNTQKIADRCNVEIEFGVTKLPHFDVPEGYD 299

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                    L      GL  R            ++   +LD+EL+VI +M +  YFLIV D
Sbjct: 300  ----SWTYLNKLCHEGLVRRYPD-------KHEELLPKLDYELSVIQKMGYVDYFLIVWD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI +A+ + IPVGPGRGS AGS+ +Y   IT+IDP+R++LLFERFLNP+R++MPD DIDF
Sbjct: 349  FINYARTHGIPVGPGRGSAAGSLVSYTTGITNIDPIRYNLLFERFLNPERVTMPDIDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  KYG + V QI+TFG+L A+  +RDVGR + +PY+  D + K IPN+
Sbjct: 409  CYERRSEVIDYVIEKYGKDCVTQIVTFGTLAARGVIRDVGRVMDLPYNFCDTIAKNIPNE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+  +   R    +D +V RL++++++LEGL RH S HAAG+VI  + + + 
Sbjct: 469  LNITID-KALIMNPELRSMYESDETVKRLIDMAKRLEGLPRHTSMHAAGVVISQKAMDEY 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLI 601
            VP+ R        TQF M  IE+ GL+K DFLGL+TLT++  ++  +    G+K+D+  I
Sbjct: 528  VPLSR-SSDGTITTQFVMTTIEELGLLKMDFLGLRTLTVISDAVKLVEKNHGIKIDVDNI 586

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +DD +    + T    G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y
Sbjct: 587  DYDDKKVLDSIGTGRCDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPKY 646

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               KN  E +  +   ++P+L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM KK 
Sbjct: 647  IKGKNEPESVTYVCKELEPILEPTYGCIVYQEQVMQIVQNLAGYTMGQADNIRRAMSKKK 706

Query: 722  KEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            +  +D +++ F+         G   NGIS+  A  I++ +  FA Y FNKSHAAAYAV++
Sbjct: 707  QYVIDAERQNFVYGNEEQGIKGCIANGISEQAANQIYDSMVDFAKYAFNKSHAAAYAVVA 766

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K +YPVEF+AA MT  +DN  K+ ++    RQ  I+++ P +N     F    +
Sbjct: 767  YQTAYLKYYYPVEFMAALMTSVVDNTRKVAEYIYSCRQMGIKVLSPDINEGEGRFLATKD 826

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y + AIK +G      I+ E  A+  + +L DF SRV  +++N+R +E+L+ AGA D
Sbjct: 827  GIRYGMYAIKSIGRQVIDIILAEREANGKYTTLSDFLSRVAGREVNKRAVENLIKAGACD 886

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSV 950
                +R Q+L   + +       +KN      ++F    E+   + ++           +
Sbjct: 887  GLDGNRQQMLLVYNTLIDNLNQEKKNSLAGQMSLFDLFSEEEKKAYEVRFPNVEEYTKEI 946

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVV 1002
            +   E+ VLG Y SGHPL+ Y+   RK       + +              ++ +  ++ 
Sbjct: 947  KLGFEKEVLGIYLSGHPLEEYEEKWRKNISAVTADFMLDEETNAVKIKDNQSVVIGGIIT 1006

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K  K T++   + ++T  +     E   FP
Sbjct: 1007 EKTIKYTKQNKAMAFITVEDLFGTVEVIIFP 1037


>gi|254251803|ref|ZP_04945121.1| DNA polymerase III [Burkholderia dolosa AUO158]
 gi|124894412|gb|EAY68292.1| DNA polymerase III [Burkholderia dolosa AUO158]
          Length = 1177

 Score = 1054 bits (2726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1042 (39%), Positives = 608/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F Q+A   G
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWIANPDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+   ++GL+ L+G   G I  A    + + A +    + K+F    Y+ L
Sbjct: 112  GRAELDASWLEGELSQGLLALSGAQQGDIGLALAAGNEEAARRHAERWAKVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q   LA +  LP+VAT+ + F++ +D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAASLAASLRLPVVATHPTQFMTADDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + Y + + EMV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 232  QKRFTTEQYFRTQDEMVALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RLAQ       +      Y +RL+FE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSREGLEKRLAQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            LS +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LSQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+S+  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCIANNLVVLPPDINLSHYRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 828  RSRTIRYGLGAVKGSGQNAIEEILRARDEKPFTDLFDFCERIDRRIVNRRTIEALIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+    + A   E N       +F            L      +   
Sbjct: 888  FDSLNANRAQLLASVPLAMEAADQAEANAL--QAGLF-DMGAESPHAHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   +      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGDL---KEGRDKLVAGIIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MLIALLDDGTGQCEITIF 1022


>gi|110681190|ref|YP_684197.1| DNA polymerase III subunit alpha [Roseobacter denitrificans OCh 114]
 gi|109457306|gb|ABG33511.1| DNA polymerase III, alpha subunit [Roseobacter denitrificans OCh 114]
          Length = 1183

 Score = 1054 bits (2726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 505/1074 (47%), Positives = 684/1074 (63%), Gaps = 64/1074 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+ HS YSLLEGAL L  +         PA+A+TD NN+F+ALEFS     
Sbjct: 1    MSTHPRFIHLRTHSEYSLLEGALRLKKLPSMCRDAGMPALALTDKNNMFAALEFSVAMSG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+       +T Q          +VLL  +  GY+ L+ L S +Y+ D+
Sbjct: 61   AGVQPILGCQVDVAY-----VTAQPGERERAPAPVVLLAQSEAGYENLMRLNSCLYI-DK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G    ++ LS L E    G+I LTGG  GP+ +         A+  +   K  F DRLY+
Sbjct: 115  GGALPQVTLSEL-ESNAGGIICLTGGPDGPVGQLLQLGQMPAAQALMDRLKAAFQDRLYI 173

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       +R  E   V++AY  +LPLVATN+  F + + YEAHD L+ +A   
Sbjct: 174  ELQRHPGESGQPEKERLTERGFVEMAYAMDLPLVATNDVYFPNSDMYEAHDALICIAEGA 233

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q+D R R+T  HY K++SEMV++F+DLPEA+ENTVEIA+RC+F      PILP+F +
Sbjct: 234  YVDQQDDRRRLTNQHYFKSQSEMVALFADLPEAIENTVEIAKRCAFQAYRRDPILPKFAD 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E +        ELR +A AGL+ RL    I      +DY +RLDFEL +I  M F GYF
Sbjct: 294  DEVE--------ELRKQAHAGLKARLE--VIPHAASVEDYTKRLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK+  IPVGPGRGSGAGS+ AYALT+TD+DPLR++LLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKEQGIPVGPGRGSGAGSLVAYALTVTDLDPLRYNLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+ +A+AD+ R RE    +  V RLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALADEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--- 593
            RPL  LVP+Y+D RS++P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ +   G   
Sbjct: 524  RPLDALVPLYQDPRSEMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVEQIMASGRPL 583

Query: 594  ---------------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                            + D++ IP DD  +Y L  +  T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  HIAADGTELYEPAPGTENDINAIPLDDERSYKLYASAKTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG  ++ SIHPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPTYCEVKNGLRELQSIHPLIDDILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  GA  NG+ K  A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAVANGVDKDKAREVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R +  +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVRKRLELPWV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA---------DKPFDSLEDF 868
            PP VN     FKV D  + Y+L A+K VG    + I +            DKPF +L D 
Sbjct: 824  PPCVNRSDATFKVADGALVYALGALKNVGVEAMKLITDGRRADPGDEGSPDKPFATLFDL 883

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              RVD K++ +R LE L  +GA D    +R ++  +LD +  Y+  + + + +   ++F 
Sbjct: 884  ARRVDLKRVGKRPLEMLARSGAFDALDANRRRVFGALDALVNYSAAIHEQKASNQVSLFG 943

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-------GIK 981
             E G    +  L        + R   E + +GFY SGHPLD Y   L++           
Sbjct: 944  -EAGDDLPEPRLHPVDDWQPAERLSEEFKAVGFYLSGHPLDDYMGQLKRKWGNDRGVPFM 1002

Query: 982  GYEESVA--TIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +E     T RG  N RLA +V  +Q++K+ +G+R  +   S+P   YE   F
Sbjct: 1003 TLDELTEKVTERGAMNARLAGIVAGRQERKSARGNRFAFAQMSDPTGAYEVTLF 1056


>gi|28212073|ref|NP_783017.1| DNA polymerase III DnaE [Clostridium tetani E88]
 gi|28204516|gb|AAO36954.1| DNA polymerase III, alpha chain [Clostridium tetani E88]
          Length = 1166

 Score = 1054 bits (2725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1058 (35%), Positives = 598/1058 (56%), Gaps = 50/1058 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K  +++ L  H+ YSLL+ +  +  ++ K+      +IAITD   ++  +EF ++A   G
Sbjct: 7    KEYNWISLHQHTEYSLLDSSAKITELIKKVKELGMKSIAITDHGVMYGCVEFYKEAIKEG 66

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIGC++ +  +    M  +       +  +VLLV    GY+ L+E+VS+  + D   
Sbjct: 67   IKPIIGCEIYVVPKS---MHIKRVDNDNAIYHLVLLVKNDVGYRNLMEIVSKASI-DGFY 122

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R+   +L+E  +EGLI  +    G +       + + AEK  L +K++F +  Y+ L
Sbjct: 123  YKPRVDHEFLRE-HSEGLIASSACLGGEVQSYILKGNIEKAEKAALNYKEIFKEGFYLEL 181

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++ +  ++++ ++    +PLVATN+  ++ +ED  AHD+L+ V     V +++R
Sbjct: 182  QDHGMKEQVKVNNELIAMSKRLSIPLVATNDVHYIEKEDSRAHDILLCVQTGKTVEEENR 241

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R  T + YLK+  EM ++FS +PEALENT++IA +C+F    H   LP F   +  D  
Sbjct: 242  MRYPTGEFYLKSPEEMYNLFSHVPEALENTIKIAEQCNFQYNFHESKLPTFPLPDKVDNY 301

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR     GL+ +            +  + RL++ELNVI  M +  YFLIV DFI
Sbjct: 302  ----DYLRELCYEGLKEKY-------DTVDEKLKNRLEYELNVIKEMGYVDYFLIVWDFI 350

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++AK+ +I  GPGRGSGAGS+ AY L IT IDP+++ L+FERFLNP+R+SMPD D DFC 
Sbjct: 351  RFAKEKDIMTGPGRGSGAGSIVAYTLGITKIDPIKYGLIFERFLNPERISMPDIDSDFCY 410

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YV  KYG   V+QI TFG++ A+A +RDVGRA+   Y +VD++ K+IP  P 
Sbjct: 411  ERRQEVIDYVVEKYGENNVSQIATFGTMAARACIRDVGRAMNYSYVEVDKIAKMIPTVPG 470

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              +++ +A+  +   +     D  ++ L+ I+ KLEGL RH STHAAG+VI   PL   V
Sbjct: 471  TSITIDKALQLNPELKAIYENDHRINDLINIAIKLEGLPRHTSTHAAGVVIASHPLVNYV 530

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+ +       VTQF M  +E+ GL+K DFLGL+TLT+++ ++  + + RG+ +DL  + 
Sbjct: 531  PLQK--NEGNIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVAMIKENRGIDIDLDKLD 588

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            FDD E Y+++    T+G+FQLES GM   +  ++PD +EDIIA +SLYRPGP+  I  Y 
Sbjct: 589  FDDKEVYNMIGEGKTVGVFQLESDGMTSFMRELKPDSLEDIIAGISLYRPGPMAEIPKYI 648

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            + K   EKI  + P ++ +L  T G ++YQEQVM++ + L+GYS+  +D++RRAM KK  
Sbjct: 649  SNKKNPEKIEYLTPRLEDILSVTYGCMVYQEQVMEVVRKLAGYSMGRSDLVRRAMSKKKH 708

Query: 723  EEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + M+++++ F+             G  +NGI + I   IF+ +  FA Y FNKSHAAAYA
Sbjct: 709  DVMEEERKNFVYGIIDESGNIEVPGCVRNGIDEKIGNKIFDSMLDFASYAFNKSHAAAYA 768

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            V+++QT ++  +YP E +AA +   M N EK+  + + A++  ++++PP+VN     F V
Sbjct: 769  VVAFQTGYLMRYYPTECIAAMLNSVMGNSEKVAYYTRYAKEEGMEVLPPNVNESYGKFTV 828

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              NRI + LAAIK VG     +I+EA      F +LEDFCS+VD   +N+R +ESL+ AG
Sbjct: 829  KGNRIRFGLAAIKNVGLNAIENIVEARGKKGTFANLEDFCSKVDLSCINKRAMESLIKAG 888

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A D F   R ++L   + +       ++       N+F  E    S +I     +  +  
Sbjct: 889  AFDNFQIFRSRMLAVHEKVLDSINNDKRKNIQGQVNLF-EELEESSLEIQYPNINEFDKK 947

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------------TIRGNNI 995
                 E+ + G Y SGHPLD YK   +        + V+                 G  +
Sbjct: 948  NILSMEKEMTGLYLSGHPLDEYKNDFKNKVSINISDIVSDKGLEGDLIEGERKVKDGEKV 1007

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +  ++ +  +K TR    + ++   +     E   FP
Sbjct: 1008 IIGGIITNVNKKATRSNEMMAFIEVEDLYGTIEVIIFP 1045


>gi|187478729|ref|YP_786753.1| DNA polymerase III subunit alpha [Bordetella avium 197N]
 gi|115423315|emb|CAJ49849.1| DNA polymerase III alpha subunit [Bordetella avium 197N]
          Length = 1163

 Score = 1054 bits (2725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1055 (38%), Positives = 610/1055 (57%), Gaps = 45/1055 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +++ +   P FVHL+VHS +S+++G + +  ++ ++A   QPA+A+TD +NLF  ++F +
Sbjct: 1    MSEAVTTPPPFVHLRVHSEFSVVDGIVRIPGLIKRVAKLGQPAVALTDLSNLFGLIKFYK 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AGI+PI G  + +   ++                 ++LV   +GY  L EL+S+ +
Sbjct: 61   SARGAGIKPIAGADVWLSNDED----------RDKPFRALILVRNNQGYLNLCELLSQAF 110

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L++Q K    +   WLQ  G EGLI+L+GG +G I  A    ++  A      +  +F  
Sbjct: 111  LVNQYKGRAEVRREWLQ--GQEGLILLSGGRAGDIGHALDAGNTAGALALARQWAAMFPG 168

Query: 181  RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR     D       ++LA    LP+VAT+   FL +++++AH+  + +A   +
Sbjct: 169  AFYIELQRAGMDGDETYTQAAMRLAAEAGLPVVATHPVQFLDQDEFQAHEARVCIAEGEI 228

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R +P  YL++  EM   F+D+P AL NTVEIA+RC+  L +  P LP F   
Sbjct: 229  LADPRRVRRFSPQQYLQSSEEMHQRFADVPSALANTVEIAKRCNLSLVLGKPRLPDFPTP 288

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            E   +    ++ L   +  GLE RLA        +      Y QRL +E + I +M F G
Sbjct: 289  EGVSL----DDYLVQLSEEGLEKRLAFLYPDEAERARQRDSYYQRLRWECSTIIQMGFPG 344

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SM
Sbjct: 345  YFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSM 404

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQD R+ VI YV+ KYG   V+QI TFG+L AKA +RD GR L MPY   D L
Sbjct: 405  PDFDIDFCQDNRERVIEYVKLKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGL 464

Query: 476  CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP +PA P SL+  + ++  FR+    +  V  L++++Q LEGL R+   HA G++I
Sbjct: 465  SKLIPFNPADPWSLERTLKEEPAFRDRYEQEEEVRALVDLAQPLEGLTRNIGMHAGGVLI 524

Query: 535  GDRPLSQLVPMYRDVR-SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-- 591
                L+   P+Y      +  V+QF+   +E AGL+KFDFLGL+ LT+L  ++ ++ Q  
Sbjct: 525  APGKLTDFCPLYCQPGQENYAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFN 584

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  D+  +  DD   Y +L    T  +FQLES GM++ L+ ++P+  EDIIA+++LY
Sbjct: 585  PDQRDFDIMALSLDDPAAYKVLCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALY 644

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+++ +V  + NRK+G+  +   HP ++  LK T GVI+YQEQVM I+Q++ GYSL 
Sbjct: 645  RPGPLESGMVDDFVNRKHGRAAVDYFHPDLEGTLKSTYGVIVYQEQVMLISQIIGGYSLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM K +E F  GA   G    +AV +F+L+ KFA YGFNKSH+AA
Sbjct: 705  GADLLRRAMGKKKPEEMAKHRELFQKGAVDKGHDPDLAVKLFDLMEKFAGYGFNKSHSAA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+I+YQTAW+K ++P EFLAA+++ +MD+ +K++ FC+DA+   ++++PP VN     F
Sbjct: 765  YALIAYQTAWLKAYHPAEFLAATLSSDMDDTDKVQIFCRDAQDNGVEVLPPDVNASGYRF 824

Query: 829  KVGDNR----------IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKL 877
               ++           + Y L A+KG G      I+ A  AD PF +L DFC RV    +
Sbjct: 825  APVEDEHTARGKPPRTMRYGLGAVKGTGQGAVEEILRAREADGPFVNLFDFCRRVGKHAV 884

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR +E+L+ AGA D    +R  +L S+    + A+     R+    ++F  +       
Sbjct: 885  NRRTIEALIRAGAFDTIESNRAAMLASVGTAMEAAEQA--ARSANQASLFGDDSSEVVAG 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
              L K +  N   +   E+  LG+YFSGH  D ++  +R++                  +
Sbjct: 943  -ELTKVAPWNLHTQLTEEKAALGYYFSGHLFDAWRDEVRRIVPMPLARIEPQRDLQW--M 999

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++ S +   TR+G  + +    +   + E + F
Sbjct: 1000 CGVLASVRVMMTRRGK-MVFAVLDDGTAQVEISVF 1033


>gi|119477117|ref|ZP_01617353.1| DNA polymerase III subunit alpha [marine gamma proteobacterium
            HTCC2143]
 gi|119449480|gb|EAW30718.1| DNA polymerase III subunit alpha [marine gamma proteobacterium
            HTCC2143]
          Length = 1207

 Score = 1054 bits (2725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1078 (38%), Positives = 601/1078 (55%), Gaps = 69/1078 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++HS +SL++G + +  ++ K+A    PA+A+TD  N ++ ++F + A AAGI+P
Sbjct: 4    SFVHLRLHSEFSLVDGLVRIKPLVQKVADAGMPAVALTDHCNFYALIKFYKAAMAAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC   +             T   +V  + LL   ++GY+ L EL+SR Y   Q     
Sbjct: 64   ILGCDFHVV----------DDTDETSVSHLTLLAQNSKGYRNLTELISRAYQDGQYLGRP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I  SWL E  TEG+I L GG  G +      N   +A  RL ++  LF    Y+ LQR 
Sbjct: 114  YIKQSWLTEY-TEGVIALGGGRQGDVGMLLVSNKLDLARTRLASYMSLFPGSFYMELQRT 172

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
             R ++     + V LA   + P+VATN   FL   DYEAH+  + +     +    R   
Sbjct: 173  GRQHEEDYLHKAVTLATELDCPVVATNEVCFLKTGDYEAHETRVCIHEGRALDDPRRSRN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE-------- 299
             +   YL+   EM  +FSD+PEAL NTVEIA+RCS  +++    LP +   +        
Sbjct: 233  YSEQQYLRTPEEMAELFSDIPEALINTVEIAKRCSAEIELGEIYLPEYPIPDDYEKDAFF 292

Query: 300  ---------------------CDDIQKEEENEL------RNKAVAGLEVRLAQGAIAKGY 332
                                   +  ++   EL      R  ++ GL  RLA        
Sbjct: 293  QHEPYDGLKAQTEKSLAAKWVGKEATEDYAKELRTGIFFRKISIEGLNDRLAFLFGDDAI 352

Query: 333  -HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
             H ++YR RLDFEL++I  M F GYFLIV DFIQWAK + IPVGPGRGSGAGS+ AYA  
Sbjct: 353  SHIKEYRDRLDFELDIILEMGFPGYFLIVMDFIQWAKDHEIPVGPGRGSGAGSLVAYAQK 412

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D RD+VI YV + YG + V+QIITFG+
Sbjct: 413  ITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDNRDKVISYVADNYGRDAVSQIITFGT 472

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            + AKA +RDV RA    Y   D+L K+IP +    +  +A   +   R+    D     +
Sbjct: 473  MAAKAVIRDVARAQGKSYGLADKLSKMIPFEVGMTLE-KAFEQEDILRDFLRDDEQAQEI 531

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
             +++ +LEG+ R+   HA G+VI    L+   P+Y D      VTQF+   +E+AGL+KF
Sbjct: 532  WDMAVQLEGITRNVGKHAGGVVIAPSKLTDFSPLYCDDSGGGLVTQFDKNDVEEAGLVKF 591

Query: 572  DFLGLKTLTLLQKSLDFLAQ-----RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            DFLGL+TLT++  ++  + +         +++  IP DD  +Y LL    T  +FQLES 
Sbjct: 592  DFLGLRTLTIIDWAVKMINRPKDDGSSPNLEIERIPLDDRASYQLLKRAETTAVFQLESR 651

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSI-----HPLID 679
            GM+  ++ +QPD +ED+IALV+L+RPGP+D+ +V  + NRK+G+ ++        H  + 
Sbjct: 652  GMKDLIKRLQPDNLEDMIALVALFRPGPLDSGMVDDFVNRKHGRAEVAYPDAKYQHEWLK 711

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
            P+L+ T GVI+YQEQVMQIAQ L+GYSL  ADVLRRAMGKK  EEM +Q+  F  GA   
Sbjct: 712  PILEPTYGVIVYQEQVMQIAQELAGYSLGGADVLRRAMGKKNAEEMARQRTSFEDGAKAK 771

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQTAW+KTHYP EF+AA+M+ E+ N 
Sbjct: 772  GVDPELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKTHYPAEFMAATMSSELQNT 831

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASA 858
            +KI  F ++ R   +    P VN     F V     I Y L AIKG+G     ++++   
Sbjct: 832  DKIVIFIEECRAMKLDYRLPDVNEGEYMFTVNKEGAIVYGLGAIKGLGEGPIENMIKTRD 891

Query: 859  D-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
            +  PF SL DFC R D +K+N+R +++L+ +G+ D  G  R  LL ++    K A+    
Sbjct: 892  ESGPFTSLFDFCERTDPRKVNKRAIDALIRSGSFDTLGVERAILLAAMPEAVKAAEQSAG 951

Query: 918  NRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
            NR     ++F                      +   +   E+  LG Y +GHP+D Y+  
Sbjct: 952  NRDAGMMDLFGDVVSADEHGDVYSDYQNVRPLSPKEKLGGEKDTLGLYVTGHPIDEYEKE 1011

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            LR+       +  A        +A +VV  +  K ++G  + +VT  + +   E +FF
Sbjct: 1012 LRQFVRNRIVDLKADFNNQ--TMAGLVVGLRTMKNKRGDTMAFVTLDDRSARIEISFF 1067


>gi|260913108|ref|ZP_05919590.1| DNA-directed DNA polymerase III alpha subunit [Pasteurella dagmatis
            ATCC 43325]
 gi|260632695|gb|EEX50864.1| DNA-directed DNA polymerase III alpha subunit [Pasteurella dagmatis
            ATCC 43325]
          Length = 1143

 Score = 1054 bits (2725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1031 (39%), Positives = 588/1031 (57%), Gaps = 38/1031 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            ++ G   +  ++     +   A+ +TD  N    + F  +A ++GI+PIIG         
Sbjct: 1    MINGIAKVKPLVKACVENNMVAMGLTDFTNFCGLVRFYGEALSSGIKPIIGA-------- 52

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
               +  +          + LL     GYQ +  L+S+ Y     +    I   WL E   
Sbjct: 53   --DVLVKSALCGDERFELTLLAKNNTGYQNITLLLSKAY-ERGYQDLPYIDQEWLIE-HR 108

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV- 200
            EGLI+L+GG +G + +     +    E  +  +++ F +  Y++L R   ++  R   + 
Sbjct: 109  EGLIILSGGHNGDVGKKLLKGNQAEIESAVHFYQEYFPEHFYLSLSRTGRHEEERYVSLA 168

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            ++ A    LP+VATN+ LFL EED+EAH++ +A+  S  +    RP   T   Y ++  E
Sbjct: 169  IKYAEQKGLPVVATNDVLFLEEEDFEAHEIRVAIHDSYTLDDPKRPKIYTSQQYFRSEQE 228

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+P ALENT+ IA+RC+  +++    LP+F   +        E  L  K+  GL
Sbjct: 229  MCELFSDVPSALENTLLIAQRCNVTIRLGEYFLPKFPTGDL-----STEAFLVKKSKEGL 283

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGP
Sbjct: 284  EERLQVLFPDEKVRQERRSEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 343

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D RD VI +V  
Sbjct: 344  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 403

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A A + 
Sbjct: 404  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFAAEP 462

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            + +    +D  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 463  QLQVVYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPGLITDFSPLYCDSEGKHPVT 522

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611
             F+   +E AGL+KFDFLGL+TLT+++ +LD +  R        VD+S IP DD E++ L
Sbjct: 523  HFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINTRLAKEGKPLVDISTIPLDDPESFEL 582

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+++ +   + +RK+G E
Sbjct: 583  LKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGNE 642

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             +        H  + P+L+ T GVI+YQEQVMQIAQ L+GY+L  AD+LRRAMGKK  EE
Sbjct: 643  PVAYPDPEYQHESLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEE 702

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M  Q+E F  GA + G+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP
Sbjct: 703  MAAQREIFEKGAIQKGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYP 762

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT EMDN +KI     +  +  +++ PP +NT    F V +N    Y + AIK
Sbjct: 763  AEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVAPPDINTGKHHFSVNENSEIVYGIGAIK 822

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      ++ A      F  L D C+RVD KK+NRR  ESL+ +GA D  G  R  L 
Sbjct: 823  GVGEGPIEALISAREQGGIFKDLFDLCARVDLKKINRRTFESLILSGAFDKLGPHRAALS 882

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGF 961
            ++L++  K +    K+      ++F        D +         +  V  + E+  LG 
Sbjct: 883  KNLEDALKASDQHAKDEALGQTDMFGVLTERHEDVEKAYASTPRWSEKVILDGERETLGL 942

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S HP+  Y   L        ++     RG    ++ +VV+ +   T+KG+R+G  T  
Sbjct: 943  YLSSHPISPYIKELEHYSSTRLKDLAPNYRGQLSTVSGLVVASRVAITKKGNRLGIATLD 1002

Query: 1022 EPAKEYEANFF 1032
            + +   +   F
Sbjct: 1003 DRSGRLDITLF 1013


>gi|317407652|gb|EFV87591.1| DNA polymerase III [Achromobacter xylosoxidans C54]
          Length = 1163

 Score = 1053 bits (2724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/1055 (37%), Positives = 609/1055 (57%), Gaps = 45/1055 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +++ +     FVHL+VHS +S+++G + + +++ ++A   QPA+A+TD +NLF  ++F +
Sbjct: 1    MSEAVTTPSPFVHLRVHSEFSVVDGIVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYK 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AGI+PI GC + +   D+                ++LLV   +GY  L EL+SR +
Sbjct: 61   GARGAGIKPIAGCDVWLSNDDDP----------AKPFRVLLLVRNHQGYLNLCELLSRAF 110

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L +QGK    I   WLQ  G +GLI+L+GG  G + +A    ++  A      +  +F  
Sbjct: 111  LTNQGKGRAEIRREWLQ--GQDGLIVLSGGRGGDVGQALDAGNAVSALALARQWAHMFPG 168

Query: 181  RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR     D       ++LA    LP+VAT+   FL E +++AH+  + +A   +
Sbjct: 169  SYYIELQRAGMDGDEAYTQAAMRLAAEAGLPVVATHPVQFLDEYEFQAHEARVCIAEGEI 228

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R + + YL +  EM   F+D+P AL NTVEIA+RC+  L +  P LP F   
Sbjct: 229  LANPRRVRRFSKEQYLLSSEEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFPTP 288

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L   +  GLE R+A        +    + Y +RL +E   I +M F G
Sbjct: 289  DGVSL----DDYLVQLSEEGLEKRMAFLFPDEAERASKREQYYERLRWECKTIIQMGFPG 344

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SM
Sbjct: 345  YFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSM 404

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQD R+ VI YV+ KYG   V+QI TFG+L AKA +RD GR L MPY   D L
Sbjct: 405  PDFDIDFCQDNRERVIDYVKEKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGL 464

Query: 476  CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP +P  P +L+  + D+  F++    +  V  L+++++ LEGL R+   HA G++I
Sbjct: 465  SKLIPFNPMDPWTLERTLKDEPAFKDRYEQEEEVRALVDLAKPLEGLTRNIGMHAGGVLI 524

Query: 535  GDRPLSQLVPMYRDVR-SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-- 591
                L+   P+Y      +  V+QF+   +E AGL+KFDFLGL+ LT+L  ++ ++ Q  
Sbjct: 525  APGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFN 584

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  D+  +  DD   Y +L    T  +FQLES GM++ L+ ++P+  EDIIA+++LY
Sbjct: 585  EDKRDFDVMALSLDDPAAYKILCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALY 644

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+++ +V  + NRK+G+  +   H  ++  LK T GVI+YQEQVM I+Q++ GYSL 
Sbjct: 645  RPGPLESGMVDDFVNRKHGRAAVDYFHNDLESTLKSTYGVIVYQEQVMLISQIIGGYSLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM K +E F  GA + G    +AV +F+L+ KFA YGFNKSH+AA
Sbjct: 705  GADLLRRAMGKKKPEEMAKHRELFEKGAKEKGHDPDLAVKLFDLMEKFAGYGFNKSHSAA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+ISYQTAW+K ++P EFLAA+M+ +MD+ +K++ FC+DA+   ++++PP VN     F
Sbjct: 765  YALISYQTAWLKAYHPTEFLAATMSSDMDDTDKVQIFCRDAQDNGVEVLPPDVNFSGYRF 824

Query: 829  KVGDNR----------IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKL 877
            +   ++          + Y L A+KG G      I+ A  +  PF +L DFC RV    +
Sbjct: 825  EPVADKHTEKGKPPRTMRYGLGAVKGTGQGAVEDILRARKEGGPFQNLFDFCRRVSKHAV 884

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR +E+L+ AGA D    +R  +L S+    + A+     R+    ++F  +       
Sbjct: 885  NRRTIEALIKAGAFDTIEPNRAAMLASVPTAMEAAEQA--ARSANQSSLFGDDSSDVVAG 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
              L K +  +   +   E+  LG+Y+SGH  D ++  +R++                  +
Sbjct: 943  -ELAKVAPWDLHKKLTEEKSALGYYYSGHLFDAWRDEVRQIVPMQLARVEPQRDLQW--M 999

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++ S +   TR+G  + +    +   + E + F
Sbjct: 1000 CGVLASVRVMMTRRGK-MVFAVLDDGTAQVEISVF 1033


>gi|313682047|ref|YP_004059785.1| DNA polymerase iii, alpha subunit [Sulfuricurvum kujiense DSM 16994]
 gi|313154907|gb|ADR33585.1| DNA polymerase III, alpha subunit [Sulfuricurvum kujiense DSM 16994]
          Length = 1179

 Score = 1053 bits (2723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1061 (36%), Positives = 614/1061 (57%), Gaps = 43/1061 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F HL +H+ YSLL+GA  ++ +  ++      ++A++D  N+F A++F Q+   
Sbjct: 1    MSTIPPFTHLHLHTEYSLLDGANKISALAARVKELGMTSVAMSDHGNMFGAIDFYQQMRG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG +  I   ++L     G         + L      GY+ L+ L S+ Y+ + 
Sbjct: 61   AGLKPIIGMEAYIHNGEDL-----GDKTIKQRFHVCLFAKNEAGYKNLMYLSSQAYI-NG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN----------SSQVAEKRLLTF 174
                 RI    L+E  +EG+I  +    G ++     N              A++  L +
Sbjct: 115  FYYFPRINKQLLRE-NSEGIICTSACLQGEVNWHLNTNSERNVKNGALGYDEAKRIALEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++FGD  Y+ + RH   D+ + + QV++++    + L+ATN++ +   +D + H+  M 
Sbjct: 174  REIFGDDFYMEIMRHGIADQLFIDEQVIRISQETNIKLIATNDTHYTYADDAQYHEAFMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +  + +     R R +  + Y+K+  +M  +F+D+PEAL NT EI  +C   L++  P  
Sbjct: 234  IGMNKLYDDPKRMRHSVHEFYIKSPEQMARLFADIPEALYNTQEIVDKCQLELKLGNPTP 293

Query: 293  PRF-----IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
            P F       +E      E+     ++   GLE RL      +     +YR+RL+FE+ V
Sbjct: 294  PNFKFTTEYAREEGLEIAEDSEYFIHRCRIGLEERLIHVPQTRHT---EYRERLEFEMEV 350

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I +MKF GY LIV DF++ AK+  I VGPGRGS AGS+ AYAL ITDIDP+++ LLFERF
Sbjct: 351  INQMKFPGYMLIVWDFVREAKRMGIAVGPGRGSAAGSLVAYALEITDIDPMKYDLLFERF 410

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPD D+DF Q RR E+I YV  KYG E+VAQIITFGSL AK  +RDV R L+M
Sbjct: 411  LNPERVSMPDIDMDFMQARRGEIIDYVVQKYGREQVAQIITFGSLLAKGVIRDVARVLEM 470

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQ---------AIADDSRFREARLADPSVDRLLEISQKL 518
            P SQ D + KLIP++    ++ +         A   + + +E    D    R+ E S+KL
Sbjct: 471  PLSQADMMAKLIPDELGITLNGKTKGGEFKPGAFQKEPKIQELIENDAQAMRVWEFSKKL 530

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R+A  HAAG+VI + PL +  P+Y+    +  VTQ+++ ++E   LIKFDFLGLKT
Sbjct: 531  EGLKRNAGMHAAGVVISNEPLWKKTPIYKPSGEETFVTQYSLNYLEDIDLIKFDFLGLKT 590

Query: 579  LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            L ++  ++  + +R   +V+   I  +D + Y ++ +  T+G+FQ+ESSGM+   + ++P
Sbjct: 591  LDVIDNAIKLIKKRYNKEVNWHTIDENDPKVYEIIQSGDTIGMFQIESSGMQDLNKRLKP 650

Query: 638  DCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
               ED+IA+++LYRPGP+++ +   +  RK+G++ I    P ++P+LK T GVI+YQEQV
Sbjct: 651  SSFEDLIAVLALYRPGPMESGMLDDFIERKHGRQAISYTFPSMEPILKPTYGVIVYQEQV 710

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQI Q + G+SL  AD++RRAMGKK  EEM K  + F  GA+  G+    A  +F+L+ K
Sbjct: 711  MQIVQTVGGFSLGGADIVRRAMGKKKIEEMQKYNKEFSEGAANQGLDYKKASELFDLIEK 770

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA YGFNKSH+AAYA++++QTAW+KT+YP EF+AA +T E DN +K+ K+  +A++  I 
Sbjct: 771  FAGYGFNKSHSAAYAMVTFQTAWLKTYYPQEFMAALLTSEKDNTDKVVKYIDEAKRMKIF 830

Query: 816  IMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            +  P +N   ++F        ++I + L AIKGVG      I+EA ++  F  ++DF +R
Sbjct: 831  LGAPDINHSQLEFSAITKDDQDQILFGLGAIKGVGEAAVESILEARSEGEFKDIQDFINR 890

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            ++ +K+N++V+E ++ AG LD FGYSR  LL+ ++ + + A+     + +   ++F  ++
Sbjct: 891  IEPQKVNKKVIECIIKAGGLDHFGYSRRALLEQVETLVETAKKGSSLKKDAQFSLFGDDE 950

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
               + ++ L+     +     + E+  LGFY SGHPLD Y+  +  +      E      
Sbjct: 951  EVTAVELNLKNMDEFDLKTLLDFEKDTLGFYVSGHPLDNYRDQIDAINYTLSSEIENIAD 1010

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            G++      V    +K ++KGS  G V+  +     E   F
Sbjct: 1011 GSSAIFIGKVEEITKKMSKKGSMFGLVSLMDFHGNIEVMLF 1051


>gi|254525897|ref|ZP_05137949.1| putative DNA polymerase IIIalpha subunit subfamily [Prochlorococcus
            marinus str. MIT 9202]
 gi|221537321|gb|EEE39774.1| putative DNA polymerase IIIalpha subunit subfamily [Prochlorococcus
            marinus str. MIT 9202]
          Length = 1165

 Score = 1053 bits (2723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1048 (36%), Positives = 604/1048 (57%), Gaps = 36/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L  HS YSLL+GA  ++ I+D+ +     +IA+TD   ++  L+  +K     I+P
Sbjct: 2    GFVPLHNHSDYSLLDGASQISKIVDRASDLGMESIALTDHGVMYGVLDLVKKCKEKNIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          + +  +     +V+L     GY+ L++L +  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPKKEKRY----HLVVLAKNYTGYKNLVKLTTISHLNGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I  S L +  ++GLI+ T    G I +A       VAE   + +KK+F D  Y+ 
Sbjct: 118  FSRPCIDKSLLSKY-SDGLIVSTACLGGEIPQAILKGRLDVAEDIAIWYKKIFADDFYLE 176

Query: 186  LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    +++++   H++ ++ATN++ +LS  D EAHD L+ V    ++S + 
Sbjct: 177  IQDHGSIEDRIVNVELIKIGKKHQIKVIATNDAHYLSNMDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   Y+K+ +EM+ +F D      + EA+ NTVEI+++           +P+F   
Sbjct: 237  RLRYTGTEYIKSENEMLELFKDHIDDVSINEAVNNTVEISQKVEVFDLFGNYRMPKFPLN 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E  D      + L   +  GL  RL +         + Y++RL  EL +I  M F  YFL
Sbjct: 297  EDTD----SFSLLTKLSNEGLLKRLKKNNFT--EVDESYKKRLSTELKIIKDMGFPDYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP R SMPD 
Sbjct: 351  VVWDYIKFARDNSIPVGPGRGSAAGSLVAYALQITNIDPVEHGLLFERFLNPARKSMPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC DRR+EVI YV N+YG ++VAQIITF  + +KA L+DV R L +PY + D+L KL
Sbjct: 411  DTDFCIDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADKLAKL 470

Query: 479  IPNDPAHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L  + D       FR+  + D  V + ++++ ++EG  +    HAAG+VI
Sbjct: 471  IPVVRGKPYKLNEMIDKNSPSQEFRDKYINDNRVKKWVDLAMRIEGTNKTYGVHAAGVVI 530

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
               PL +LVP+ R+      +TQ++M  IE  GL+K DFLGLK LT++ K++  + Q  G
Sbjct: 531  ASDPLDELVPLQRN-NEGQIITQYSMDDIESLGLLKMDFLGLKNLTMIDKTISLINQSTG 589

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              +++  +P +D +T+ L+      GIFQLESSGM+Q ++  +P+ +EDI ++++LYRPG
Sbjct: 590  KIINIDDLPQNDSKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALYRPG 649

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRKNG EK+   HP I  +L ET G+++YQEQ+M+IAQ L+GYSL +AD
Sbjct: 650  PLDAGLIPKFINRKNGNEKVDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSLGDAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM K +  F++G+ K G+++ +A ++F+ +  FA+Y FNKSH+ AY  
Sbjct: 710  LLRRAMGKKKVSEMVKHRNIFVNGSMKKGVNEKLANDLFDQMVLFAEYCFNKSHSTAYGA 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K H+PV ++AA +++   + +K++++  +     I+++ PS+N   VDF + 
Sbjct: 770  VTYQTAFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMGIEVISPSINFSGVDFTIK 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            +N+I + L+AIK +G +  R+I+E       F+SL D C R+ S  LN+R LESL+  GA
Sbjct: 830  NNQILFGLSAIKNLGDSAIRNIIENRNSFGIFESLSDLCDRLPSNVLNKRSLESLIHCGA 889

Query: 891  LDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG---TFSDKITLEKFSV 945
            LD F    +R QLL  L+++  +A    ++R +   N+F  ++           L+K   
Sbjct: 890  LDEFSNDNNRAQLLSDLEHVIDWASSRNRDRLSGQGNLFDSKEEFSNVAFLDTQLKKVDD 949

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +   + + E+++LGFY S HPL       + +      +   T     + L  M+   +
Sbjct: 950  YSLIEKLKLEKQLLGFYLSDHPLKHLAKQAKLISPINISQLEETKDRTKVSLVVMIPDLK 1009

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q  TRKG R+  V   + +   EA  FP
Sbjct: 1010 QITTRKGDRMAIVQLEDLSGSCEAIVFP 1037


>gi|168185626|ref|ZP_02620261.1| DNA polymerase III subunit alpha [Clostridium botulinum C str.
            Eklund]
 gi|169296453|gb|EDS78586.1| DNA polymerase III subunit alpha [Clostridium botulinum C str.
            Eklund]
          Length = 1167

 Score = 1053 bits (2723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1066 (35%), Positives = 600/1066 (56%), Gaps = 58/1066 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL  H+ YSLL+G+  +  ++++       ++AITD   +F  ++F +KA  AG
Sbjct: 2    KGQKFVHLHTHTEYSLLDGSGKIGGLINRAKELGMDSLAITDHGTMFGCVDFYKKAKEAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG ++ +  +    M  +          +VLLV    GY+ L+++VS+  + D   
Sbjct: 62   IKPIIGSEIYVASKS---MNIKRNDSENKNHHLVLLVKNEIGYKNLMKIVSKAAI-DGFY 117

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R+   +L+E  +EGLI L+   +G +       + + A +  L +K +F +  Y+ L
Sbjct: 118  YKPRVDHEYLKE-HSEGLIALSACLAGEVSYNLLNGTKEKAREVALFYKDIFKEGFYLEL 176

Query: 187  QRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    + R ++ +++L+   ++PLVATN+  ++ +ED ++HDVL+ +     +  +DR
Sbjct: 177  QYHGIDKQLRVNEMLIELSRELDIPLVATNDVHYIKKEDAKSHDVLLCIQTGKTLDDEDR 236

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R  P + YLK+  EM + FS +PEALENTV+IA+ C+F    H   LP F   E     
Sbjct: 237  MRYEPQNFYLKSPEEMYNTFSYVPEALENTVKIAQECNFDYIFHESKLPNFPLPEG---- 292

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K+    ++     GLEVR ++         +           VI  M +  YFLIV DF 
Sbjct: 293  KDHFEYMKELCYKGLEVRYSEITPELEERLEYEL-------GVIKEMGYVDYFLIVWDFF 345

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +++ +  I  GPGRGS AGS+ AY L IT IDP++++L+FERFLNP+R+SMPD D DFC 
Sbjct: 346  RFSHEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDFCY 405

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YV  KYG + V+QI+TFG++  +A +RDVGRA+   Y++VDR+ K+IP    
Sbjct: 406  ERRGEVIDYVVEKYGKDNVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTVLG 465

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  +   +EA  +D  V  L+++++ LEGL RH STHAAG+VI  +PL   VP
Sbjct: 466  ITID-KALEMNPELKEAYDSDNRVKELIDVARDLEGLPRHTSTHAAGVVIASQPLVNYVP 524

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            + +    +  VTQF M  +E+ GL+K DFLGL+TLT+++ ++D + +    K+DL  I F
Sbjct: 525  LSK--NEEAIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIDLIEENTGTKIDLDKINF 582

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D   Y +L    T+G+FQLES+GM   ++ ++P+ +EDIIA +SLYRPGP+  I  Y  
Sbjct: 583  EDENVYGMLGKGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAEIPKYIK 642

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             KN  + I  + P ++P+L  T GV++YQEQVMQI + L+GYS+  +D++RRAM KK  +
Sbjct: 643  NKNNPKNIEYLTPELEPILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHK 702

Query: 724  EMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             M+++++ FI             G  KNGIS+  A  I++ +  FA Y FNKSHAAAYAV
Sbjct: 703  VMEEERKNFIYGIEDEKGNVIVPGCLKNGISEDAANKIYDQMMDFASYAFNKSHAAAYAV 762

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++Y TA++  +YP EF+AA +     N +K+  + + A+Q  I+++PP++N     F V 
Sbjct: 763  VAYYTAYLVYYYPTEFMAAILNSVRGNSDKVAVYIRAAKQMEIEVLPPNINKSFGKFTVQ 822

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            + +I + L+AIK VG     +I +   +   F+S  DFC+++ S  +N+R++ESLV AGA
Sbjct: 823  NGKICFGLSAIKNVGENVVDNIAKVREEKGEFNSFVDFCNKISSGSINKRMVESLVKAGA 882

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSS 949
             DCFG  R Q+L   + I        K   +   ++F      F D +I        +  
Sbjct: 883  FDCFGIYRSQILAVYEKIIDSVVNQRKKNIDGQMSLFGSFDDEFKDTEIKYPAIDEFDKK 942

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---------------------- 987
             +   E+ + G Y +GHPL+ Y+ ILR        + +                      
Sbjct: 943  NKLAMEKEMTGLYLTGHPLEEYEEILRNRTSAKTTDIIVDESLEEELIDEVTLHVEEQNS 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                G+ + +  ++ +  +K TR  S + ++T  +     E   FP
Sbjct: 1003 KIKDGDKVIICGLITNVTRKITRTNSMMAFITLEDLYSSIEVIIFP 1048


>gi|293604441|ref|ZP_06686848.1| DNA-directed DNA polymerase III alpha subunit [Achromobacter
            piechaudii ATCC 43553]
 gi|292817318|gb|EFF76392.1| DNA-directed DNA polymerase III alpha subunit [Achromobacter
            piechaudii ATCC 43553]
          Length = 1163

 Score = 1053 bits (2722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1055 (38%), Positives = 610/1055 (57%), Gaps = 45/1055 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +++ +     FVHL+VHS +S+++G + + +++ ++A   QPA+A+TD +NLF  ++F +
Sbjct: 1    MSEAVTNPTPFVHLRVHSEFSVVDGIVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYK 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AG++PI GC + +   D+                ++LLV   +GY  L EL+S+ +
Sbjct: 61   GARGAGVKPIAGCDVWLSNDDDPSK----------PFRLLLLVRNHQGYLNLCELLSKAF 110

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L +QGK    I   WLQ  G +GLI L+GG  G + +A    ++  A      +  LF  
Sbjct: 111  LTNQGKGRAEIRREWLQ--GQQGLIALSGGRMGDVGQALDAGNAVSALALARQWAHLFPG 168

Query: 181  RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR     D       ++LA    LP+VAT+   FL E +++AH+  + +A   +
Sbjct: 169  SYYIELQRAGMDGDEAYTQAAMRLAGEAGLPVVATHPVQFLDEYEFQAHEARVCIAEGEI 228

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R T + YL +  EM   F+D+P AL NTVEIA+RC+  L +  P LP F   
Sbjct: 229  LANPRRVRRFTKEQYLLSSEEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFPTP 288

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L   +  GLE R+A        +    + Y +RL +E   I +M F G
Sbjct: 289  DGVTL----DDYLVQLSEEGLEKRMAFLFPNEAEREAKREQYYERLRWECKTIIQMGFPG 344

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SM
Sbjct: 345  YFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSM 404

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQD R+ VI YV+ KYG   V+QI TFG+L AKA +RD GR L MPY   D L
Sbjct: 405  PDFDIDFCQDNRERVIDYVKEKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGL 464

Query: 476  CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP +P  P SL+  + D+  F++    +  V  L+++++ LEGL R+   HA G++I
Sbjct: 465  SKLIPFNPMDPWSLERTLKDEPAFKDRYEQEEEVRALVDLAKPLEGLTRNIGMHAGGVLI 524

Query: 535  GDRPLSQLVPMYRDVR-SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-- 591
                L+   P+Y      +  V+QF+   +E AGL+KFDFLGL+ LT+L  ++ ++ Q  
Sbjct: 525  APGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFN 584

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  D+  +  DD   Y +L    T  +FQLES GM++ L+ ++P+  EDIIA+++LY
Sbjct: 585  EDKRDFDVMALELDDPAAYKILCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALY 644

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+++ +V  + NRK+G+  +   H  ++  LK T GVI+YQEQVM I+Q++ GYSL 
Sbjct: 645  RPGPLESGMVDDFVNRKHGRAAVDYFHNDLEGTLKSTYGVIVYQEQVMLISQIIGGYSLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM K +E F  GA + G    +AV +F+L+ KFA YGFNKSH+AA
Sbjct: 705  GADLLRRAMGKKKPEEMAKHRELFEQGAKEKGHDPDLAVKLFDLMEKFAGYGFNKSHSAA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+ISYQTAW+K ++P EFLAA+M+ +MD+ +K++ FC+DA+   ++++PP VN     F
Sbjct: 765  YALISYQTAWLKAYHPTEFLAATMSSDMDDTDKVQIFCRDAQDNGVEVLPPDVNFSGYRF 824

Query: 829  KVGDNR----------IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKL 877
            +   ++          + Y L A+KG G      I+ A  +  PF +L DFC RV  + +
Sbjct: 825  EPVKDKYTEKGKPPRTMRYGLGAVKGTGQGAVEDILRARKEGGPFLNLFDFCRRVGKQAV 884

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR +E+L+ AGA D    +R  +L S+    + A+     R+    ++F  + G     
Sbjct: 885  NRRTIEALIKAGAFDTIEPNRAAMLASVPTAMEAAEQA--ARSANQASLFGDDSGDVVAG 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
              L K +  +   +   E+  LG+Y+SGH  D ++  +R++                  +
Sbjct: 943  -ELAKVAPWDLHKKLTEEKSALGYYYSGHLFDAWRDEVRRIVPMQLARVEPQRDLQW--M 999

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++ S +   TR+G  + +    +   + E + F
Sbjct: 1000 CGVLASVRVMMTRRGK-MVFAVLDDGTAQVEISVF 1033


>gi|152967131|ref|YP_001362915.1| DNA polymerase III subunit alpha [Kineococcus radiotolerans SRS30216]
 gi|151361648|gb|ABS04651.1| DNA polymerase III, alpha subunit [Kineococcus radiotolerans
            SRS30216]
          Length = 1180

 Score = 1053 bits (2722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1070 (35%), Positives = 565/1070 (52%), Gaps = 53/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  + SF HL VH+ YS+L+GA  ++++    A    PA+A TD   +F A +F + A  
Sbjct: 1    MASADSFAHLHVHTEYSMLDGAAKVDDLFRTAAEMGMPAVATTDHGFVFGAYDFWKTAKK 60

Query: 65   AGIQPIIGCQLDIDMQ------------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
             G++PIIG +  +               D    +    +   +   + +L     G   L
Sbjct: 61   HGVKPIIGVEAYLTPGTARQDKTRVKWGDPNGRSGDDVSGAGSYTHMTMLAQNTAGMHNL 120

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             ++ S   L        R+    L +  + GLI  TG  SG +           A K   
Sbjct: 121  FKMSSLASLEG-FLYKPRMDRELLSQY-SAGLIATTGCPSGEVQTRLRLGQYDEARKAAA 178

Query: 173  TFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             ++ +F  +  +  L  H    +R  +  +++LA   +LPL+ATN+  +    D +AH  
Sbjct: 179  DYRDIFGAENFFCELMDHGLDIERRVQDDLLKLAKDLDLPLLATNDLHYTHAGDSQAHAA 238

Query: 231  LMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
            L+ V   + ++   R +   D  YLK+ +EM  ++ D PEA +NT+ IA RC        
Sbjct: 239  LLCVQSGSTLADPKRFKFDADEFYLKSPAEMRHVWRDHPEACDNTLLIAERCEVEFTEST 298

Query: 290  P-ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +PRF   E +D    EE+    +  +GL  R   G         D R++ D+E+ VI
Sbjct: 299  GAYMPRFPCPEGED----EESWFVKEVWSGLAQRYPAGI------PDDVRKQADYEIEVI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
                ++GYFL+VADFI W+K+N I VGPGRGSGAGS+ AYA+ ITD+DPLR  L FERFL
Sbjct: 349  TSKGYAGYFLVVADFINWSKENGIRVGPGRGSGAGSMAAYAMKITDLDPLRHGLFFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+RMSMPDFD+DF + RR EVI+YV  KYG +RVAQI+T+G+++AK A++D  R L  P
Sbjct: 409  NPERMSMPDFDVDFDERRRGEVIQYVVEKYGTDRVAQIVTYGTIKAKQAVKDSSRVLGFP 468

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            +S  DR+ K +P       + L  I D +         FRE   +DP V ++++ ++ LE
Sbjct: 469  FSMGDRITKTMPPAVMGKDIPLSGIFDPNHKRYSEAGEFRELYKSDPEVVKVVDTARGLE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++   PL  L+P+ +       +TQF+    E  GL+K DFLGL+ L
Sbjct: 529  GLKRQWGVHAAGVIMSSDPLIDLIPIMKREADGAIITQFDYPTCETLGLVKMDFLGLRNL 588

Query: 580  TLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T+L  +L  + A     VDL  +  DD  T+ LL    TLG+FQ +   MR  L  M+PD
Sbjct: 589  TILDDALKNVVANGKEAVDLDALELDDQATFDLLGRGDTLGVFQFDGGPMRSLLRLMRPD 648

Query: 639  CIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQ 692
              EDI A+ +LYRPGP+       Y  RKNG+E I  IHP ++     +L  T G+I+YQ
Sbjct: 649  NFEDISAVGALYRPGPMGAGSHTAYARRKNGQEPITPIHPELEEPLKEILGTTYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM IAQ ++GYSL  AD+LRRAMGKK +E +D +   F  G   NG SK     ++++
Sbjct: 709  EQVMSIAQKVAGYSLGSADLLRRAMGKKKREVLDAEYVGFEKGMLDNGFSKECVKALWDI 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  F+DY FNK+H+AAY ++SY TA++K +YP E++AA +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFSDYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAAVLTSVRDDKDKSALYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
             IQ++PP VN    +F      I + L AI+ VG      ++EA A+   ++S  DF ++
Sbjct: 829  GIQVLPPDVNESSANFTAVGADIRFGLTAIRNVGANVVDAVVEARAEKGRYESFTDFLTK 888

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V +   N+R +ESL+ AGA D  G+ R  L+   ++       V++N      ++FA   
Sbjct: 889  VPAVVCNKRTIESLIKAGAFDSLGHRRRALVAKHEDAVDAVVDVKRNEAIGQFDLFAGLG 948

Query: 932  GTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            G          + +        +    +E+++LG Y S HPL   + +L           
Sbjct: 949  GDDDGGAGGFHVEIPDLPEWEKAELLAHERQMLGLYVSDHPLFGLERLLANASDVPIATL 1008

Query: 987  VA---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +       G+NI +A M+   Q+K T++G+    VT  + A   E  FFP
Sbjct: 1009 LEDESRPDGSNITIAGMITGLQRKTTKQGNYWAIVTVEDLAGAIECLFFP 1058


>gi|126696251|ref|YP_001091137.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT
            9301]
 gi|126543294|gb|ABO17536.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT
            9301]
          Length = 1165

 Score = 1052 bits (2721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1048 (37%), Positives = 604/1048 (57%), Gaps = 36/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  ++ I+D+       +IA+TD   ++  L+  +K    GI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQISKIVDRACDLGMESIALTDHGVMYGVLDLVKKCKEKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          + +  +     +V+L     GY+ L++L +  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPKKEKRY----HLVVLAKNYTGYKNLVKLTTISHLNGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I  S L +  ++GLI+ T    G I +A       VAE   L +KKLF D  Y+ 
Sbjct: 118  FSRPCIDKSLLSKY-SDGLIISTACLGGEIPQAILKGRLDVAEDIALWYKKLFADDFYLE 176

Query: 186  LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    +++++   H++ ++ATN++ +LS  D EAHD L+ V    ++S + 
Sbjct: 177  IQDHGSIEDRIVNVELIKIGKKHQIKVIATNDAHYLSNMDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   Y+K+ +EM+ +F D      + EA+ NTVEI+++           +P+F   
Sbjct: 237  RLRYTGTEYIKSENEMLELFKDHIDDESIIEAVNNTVEISQKVEVFDLFGNYRMPKFPLN 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E  D      + L   +  GL  RL +  +      ++Y++RL  EL +I  M F  YFL
Sbjct: 297  EDTD----SFSFLTQLSNKGLLKRLKKNDLT--EVDENYKKRLSSELKIIKDMGFPDYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP R SMPD 
Sbjct: 351  VVWDYIKFARDNSIPVGPGRGSAAGSLVAYALQITNIDPVEHGLLFERFLNPARKSMPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC DRR+EVI YV N+YG ++VAQIITF  + +KA L+DV R L +PY + D+L KL
Sbjct: 411  DTDFCIDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADKLAKL 470

Query: 479  IPNDPAHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L  + D       FR+  + D  V + ++++ ++EG  +    HAAG+VI
Sbjct: 471  IPVVRGKPHKLNEMIDKNSPSQEFRDKYINDNRVKKWVDLALRIEGTNKTYGVHAAGVVI 530

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
               PL +LVP+ R+      +TQ++M  IE  GL+K DFLGLK LT+++K++  + Q  G
Sbjct: 531  ASDPLDELVPLQRN-NEGQIITQYSMDDIESLGLLKMDFLGLKNLTMIEKTVSLINQSTG 589

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             K+++  +P +D +T+ L+      GIFQLESSGM+Q ++  +P+ +EDI ++++LYRPG
Sbjct: 590  RKINIDELPQNDGKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALYRPG 649

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRKNG EKI   HP I  +L ET G+++YQEQ+M+IAQ L+GYSL +AD
Sbjct: 650  PLDAGLIPKFINRKNGNEKIDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSLGDAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM K +  F+ G+ K G+++ +A ++F+ +  FA+Y FNKSH+ AY  
Sbjct: 710  LLRRAMGKKKVSEMVKHRNIFVDGSRKKGVNEKLANDLFDQMVLFAEYCFNKSHSTAYGA 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K H+PV ++AA +++   + +K++++  +     I+++ PS+N   VDF + 
Sbjct: 770  VTYQTAFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMGIEVISPSINFSGVDFTIK 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            +N+I + L+AIK +G +  R+I+E       F SL D C R+ S  LN+R LESL+  GA
Sbjct: 830  NNQILFGLSAIKNLGDSAIRNIIENRNSFGTFKSLSDLCDRLPSNILNKRSLESLIHCGA 889

Query: 891  LDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---AHEKGTFSDKITLEKFSV 945
            LD F    +R QLL  L+++ ++A    ++R +   N+F               L K   
Sbjct: 890  LDEFSKDNNRAQLLSDLEHVVEWASSRNRDRLSGQGNLFDSKDEFSNVAFSDSQLAKVDD 949

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +   + + E+++LGFY S HPL       + +      +         + L  M+   +
Sbjct: 950  YSLIEKLKLEKQLLGFYLSDHPLKHLTKPAKLVSPISISQLEEIKDRTKVSLVGMIPDLK 1009

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q  TRKG R+  V   + +   EA  FP
Sbjct: 1010 QITTRKGDRMAIVQLEDLSGSCEAIVFP 1037


>gi|325528701|gb|EGD05777.1| DNA polymerase III subunit alpha [Burkholderia sp. TJI49]
          Length = 1118

 Score = 1052 bits (2721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1042 (40%), Positives = 608/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F Q+A   G
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNPDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +   WL    +EGL+ L+G   G I  A    + + A +    + K+F    Y+ L
Sbjct: 112  GRAELDPGWLDGELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T D Y + + EMV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 232  QKRFTTDQYFRTQDEMVALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RLAQ       +      Y +RL+FE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSKEGLEKRLAQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            LS +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LSQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+S+  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMVKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCIVNNLVVLPPDINQSHYRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 828  RSRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTIEALIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+    + A   E N       +F            L      +   
Sbjct: 888  FDSLNTNRAQLLASVPLAMEAADQAEANAL--QAGLF-DMGAESPHAHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKVGEL---KEGRDKLVAGIIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MLIALLDDGTGQCEITIF 1022


>gi|229826056|ref|ZP_04452125.1| hypothetical protein GCWU000182_01420 [Abiotrophia defectiva ATCC
            49176]
 gi|229789798|gb|EEP25912.1| hypothetical protein GCWU000182_01420 [Abiotrophia defectiva ATCC
            49176]
          Length = 1160

 Score = 1052 bits (2721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/1051 (33%), Positives = 569/1051 (54%), Gaps = 41/1051 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL +H+ +SLL+G+  ++ ++ ++      A AITD   ++  +EF +   A GI+P
Sbjct: 2    SFTHLHLHTGFSLLDGSSKISELVKRVKELGMDACAITDHGVMYGVIEFYKACKAEGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +      +   +          ++LL     G++ L+++VSR +         
Sbjct: 62   IIGCEVYVAPNSRFEKGTE--KSAKRYNHLILLAENDTGHKNLMKIVSRGFTEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L+E   EG+I  +   +G +         + A+   L  + +F  +  ++ LQ 
Sbjct: 119  RVDYELLREYH-EGIIASSACLAGIVPTKLREGDYEGAKAEALRLRDVFGENNFFLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ +    +++++    +PL+ATN+  +L +ED EAHDVL+ +    +V+  DR +
Sbjct: 178  HGLPEQKFVNQGLMRISAETGIPLIATNDCHYLYKEDAEAHDVLICIQTQKIVTDDDRMK 237

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +  K+  EM  IF  +PEA++NT +IA RC+  ++     LP +   E       
Sbjct: 238  YEGGQFYVKSPEEMKEIFHYIPEAIKNTEKIAERCNVEIEFGKYHLPEYPVPEG----YT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L      G + R        G    + R RL +E++ I+ M F  YFLIV D+I +
Sbjct: 294  ALSYLNKLCEDGFKSRYEGIT---GDEENELRARLKYEIDTISNMGFVDYFLIVWDYINF 350

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+NNI VGPGRGS AGS+ AY L IT +DP++++LLFERFLNP+R++MPD DIDFC  R
Sbjct: 351  AKENNIAVGPGRGSAAGSIVAYCLGITGVDPIKYNLLFERFLNPERVTMPDIDIDFCVLR 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG E+V QI+TFG++ AK  +RDVGRAL +PYS  D++ K+IPN+    
Sbjct: 411  RQEVIDYVTEKYGREKVVQIVTFGTMAAKMVIRDVGRALDLPYSFCDKVAKMIPNELKMN 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ D+    +    +    +L+++S++LEGL RH S HAAG+VI  R +   VP+ 
Sbjct: 471  ID-KALKDNPDLMQLYEENEEAKKLIDLSRRLEGLPRHTSIHAAGVVISKREVDSYVPIS 529

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLI 601
                     TQ+ M+ IE+ GL+K DFLGL+ LT+++K+++ + +          D+  I
Sbjct: 530  T-SSDGAVTTQYTMETIEQLGLLKMDFLGLRNLTVIEKAVELVNRNRRKSGQEDFDIEKI 588

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
              +D   Y +++   T G+FQLES GM   ++ ++PD IEDIIA +SLYRPGP++ I  Y
Sbjct: 589  DMEDENIYLMISEGKTEGVFQLESPGMTSFMKKLRPDNIEDIIAGISLYRPGPMEFIDDY 648

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             N K    +I      + P+LK T G I+YQEQVMQI + L+GYS  ++D+LRRAM KK 
Sbjct: 649  INGKRNSTEIEYDCEELKPILKSTYGCIVYQEQVMQIVRELAGYSYGQSDLLRRAMSKKK 708

Query: 722  KEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               M ++++ F+         G    G+S+ +A  I++ +  FA Y FN+SHAAAYA I+
Sbjct: 709  DSVMRQERQNFVYGDETKGIPGCVAKGVSEQVANKIYDKMIDFAKYAFNRSHAAAYAFIT 768

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K +YP E++AA +T  M N  K+ ++   ++   I I+PP VN    +F     
Sbjct: 769  YQTAYLKYYYPKEYMAALLTSVMSNTGKVSEYILSSKNMGIAILPPDVNEGEGNFTAVKE 828

Query: 834  RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y ++AIKG+G      I++   +   + SL D   R+    LN++ LE+L+ +GALD
Sbjct: 829  GIRYGMSAIKGLGENVTETIVKDREERGEYKSLSDLVERLSGI-LNKKGLEALIKSGALD 887

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSV 950
                +R + +   + +       + ++     ++F  A ++   + ++ +      +   
Sbjct: 888  GLSGTRREKMAVYEQVLDSVSHEKHSKMAGQLSLFDIAPQEDLSALEVKMPVLGEFDMET 947

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVV 1002
            +   E+ ++G Y SGHPL  Y+  LR +      +              G N  L  +  
Sbjct: 948  KLAFEKEMIGIYLSGHPLYDYQDFLRGICNTNSMDFAYDEEEGRVNVRSGMNYVLGGIAT 1007

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                K TR   R+ ++T  +     E   FP
Sbjct: 1008 GVNIKLTRNNQRMAFITLEDLVGNIEIIVFP 1038


>gi|116074620|ref|ZP_01471881.1| DNA polymerase III subunit alpha [Synechococcus sp. RS9916]
 gi|116067842|gb|EAU73595.1| DNA polymerase III subunit alpha [Synechococcus sp. RS9916]
          Length = 1177

 Score = 1052 bits (2721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1055 (36%), Positives = 583/1055 (55%), Gaps = 43/1055 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++      PA+A+TD   ++ A+E  +     GI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPQMVERAKELGMPALALTDHGVMYGAVELLKLCQGTGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          + +  +     +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVVNGSIDDPQQKKERRY----HLVVLAKNATGYRNLVKLTSISHLRGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    LQ+  +EGLI+ T    G I +A      +VA      ++++FGD  Y+ 
Sbjct: 118  FSRACIDKHLLQQY-SEGLIVATACLGGEIPQAIMRGRPEVARDVARWYQEVFGDDFYLE 176

Query: 186  LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V++A    + L+ATN++ +L+  D EAHD L+ V    ++S + 
Sbjct: 177  IQDHGSVEDRIVNVEIVKIAKELGIGLIATNDAHYLTRNDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   ++++  EM  +F D        EA+  T E+A +      +    +PRF   
Sbjct: 237  RLRYTGTEFIRSEEEMGRLFVDHLDPAVVQEAIATTAEVAEKVEDYDILGRYQMPRFPIP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +         + L+     GL  RL             Y +RL +EL V+ +M F  YFL
Sbjct: 297  DG----HTPVSYLKEVTEQGLRDRL--SLAEGASIDAVYAERLVYELGVMEQMGFPTYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A++  IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 351  VVWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KL
Sbjct: 411  DTDFCIERRSEVIDYVTRRYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKL 470

Query: 479  IPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L A+  +      FRE    DP V R ++++ ++EG  +    HAAG+VI
Sbjct: 471  IPVARGKPAKLAAMIGEESPNPDFREKYQNDPVVKRWVDMAMRIEGTNKTFGVHAAGVVI 530

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               PL +LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +     
Sbjct: 531  AADPLDELVPLQRN-NDGQVITQYYMEDVESMGLLKMDFLGLKNLTMIDKTLELVEANFG 589

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              +D   +P  D +T+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRPG
Sbjct: 590  ESIDPDKLPPQDPDTFALLARGDLEGIFQLESSGMRQIVRDLRPSSLEDISSILALYRPG 649

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRK+G+E I   H  ++P+L+ET G+++YQEQ+M+IAQ L+GYSL EAD
Sbjct: 650  PLDAGLIPKFINRKHGREAIDFAHQALEPILQETYGIMVYQEQIMKIAQDLAGYSLGEAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM K +  F+ GAS+ G+ + IA  +F+ +  FA+Y FNKSH+ AY  
Sbjct: 710  LLRRAMGKKKVSEMQKHRGIFVKGASERGVDEKIADELFDQMVLFAEYCFNKSHSTAYGA 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K HYPV ++AA +T+     +K++++  +     I++MPP VN   +DF   
Sbjct: 770  VTYQTAYLKAHYPVAYMAALLTVNAGASDKVQRYISNCNAMGIEVMPPDVNASGIDFTPT 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             +RI + L+A++ +G    RH++ +   D PF+SL D C R+ S  LNRR LESL+  GA
Sbjct: 830  GDRILFGLSAVRNLGDGAIRHLIASRQEDGPFESLADVCDRLPSSVLNRRSLESLIHCGA 889

Query: 891  LDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG----------TFSDKI 938
            LD      +R QL+  LD +  +A    K+R +   N+F                 S   
Sbjct: 890  LDALEPKANRAQLMADLDLLLDWASSRAKDRESGQGNLFDLMAAATAAEGEGANDLSMAP 949

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
                    + + +   E+ ++GFY S HPL    P  + +   G            +   
Sbjct: 950  KAPPVPDYHPTEKLRLEKDLVGFYLSDHPLKQLTPPAKLLAPIGLGSLEEQADKAKVSAI 1009

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            AMV   +Q  TRKG R+  +T  +     EA  FP
Sbjct: 1010 AMVSEYRQVTTRKGDRMAVLTLEDLTGSCEAVVFP 1044


>gi|261855201|ref|YP_003262484.1| DNA polymerase III subunit alpha [Halothiobacillus neapolitanus c2]
 gi|261835670|gb|ACX95437.1| DNA polymerase III, alpha subunit [Halothiobacillus neapolitanus c2]
          Length = 1168

 Score = 1052 bits (2720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1055 (38%), Positives = 595/1055 (56%), Gaps = 51/1055 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ +SL++G L +  +L        PA+A+TD  NLF+ ++F + A  +GI+P
Sbjct: 2    SFVHLHLHTEFSLIDGTLRIKPMLAAAKERGLPALALTDQANLFAMVKFYEAARKSGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G    +              P  T   +VLL     G++ L EL+SR Y   Q +   
Sbjct: 62   ILGADCLVV-----------DEPGSTPYRVVLLAQNNLGFRHLTELLSRGYCEGQIQDRP 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
             +   WL +    GLI L+GG  G I +      ++  +  +  + + F DR Y+ L   
Sbjct: 111  MLRREWLTQEQCAGLIALSGGHLGEIGQLLLHGKARERKAAIKFWTERFPDRFYLELTRC 170

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  +       V+LA   +LP+VATN+  FL +E++EAH+V + +    V+    RP  
Sbjct: 171  GRPDEEKYLHAAVELAEQAQLPVVATNDVRFLDQENFEAHEVRVCIQQGRVLDDPRRPHD 230

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   YL+   EM ++F+D+PEA+EN++ +A RC+  LQ+    LP F     +     E
Sbjct: 231  YTALQYLRPADEMQALFADIPEAIENSLAVAERCNVTLQLGKNFLPNFPTPNGE----TE 286

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR  +  GL  R  +    +    + YR+RL+ EL+VI +M FSGYFLIVADFIQWA
Sbjct: 287  ADYLRTLSEQGLAHRFERVPAEQH---EAYRERLNIELDVIIQMGFSGYFLIVADFIQWA 343

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+  IPVGPGRGSGAGS+ A+AL ITDIDP+ + LLFERFLNP+R+SMPDFDIDFC + R
Sbjct: 344  KRQGIPVGPGRGSGAGSLVAWALLITDIDPIPYDLLFERFLNPERVSMPDFDIDFCMEGR 403

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV  +YG   V+QI T G++ AKA +RDVGR +  PY  VDR+ KLIP  P   V
Sbjct: 404  DRVIDYVAERYGRAAVSQIATHGTMAAKAVVRDVGRVMSYPYGFVDRIAKLIPMKPGLDV 463

Query: 488  SLQAIAD------------DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            +L+                   FR+    D  V  ++++   LEGL R+   HA G+VI 
Sbjct: 464  TLEDALGRTERSQKEQERFSQEFRDLYERDEEVRAIVDMGMALEGLSRNVGKHAGGVVIA 523

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-- 593
               L+   PMY +       +Q +   +E  GL+KFDFLGL+ LT++  +L  +      
Sbjct: 524  PSKLTDFTPMYCESNGASAASQLDKDDVEAVGLVKFDFLGLRNLTIIDWALGSINATRQK 583

Query: 594  ---VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 VD+++IP DD  +++LL    T  +FQLES GM+  +  +QPD  EDIIALV+L+
Sbjct: 584  VGKEPVDITVIPLDDKPSFNLLKRCETTAVFQLESRGMKDLIRRLQPDTFEDIIALVALF 643

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+ + +V  +  RK G++KI  +HP +  +LK T GVI+YQEQVMQIAQ+L+GY+L 
Sbjct: 644  RPGPLQSGMVDDFILRKKGEQKIEYLHPWLTDVLKPTYGVIVYQEQVMQIAQILAGYTLG 703

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+E F+ GA    +  T A  IF+L+ KFA YGFNKSH+AA
Sbjct: 704  GADLLRRAMGKKKPEEMAKQREIFLEGAKSKQVDPTQAGYIFDLMEKFAGYGFNKSHSAA 763

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+++YQTAW+K HYP  F+AA ++ +MDN +KI     + ++  + ++PP VN     F
Sbjct: 764  YALVAYQTAWLKAHYPAHFMAAVLSADMDNTDKIVGLIGECQRMGLNVIPPDVNHCAYKF 823

Query: 829  K-VGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLV 886
            + + ++ + Y L AIKGVG    + I+E      PF  + DFC RV S+ LN+RVLE++V
Sbjct: 824  QALDEHTVVYGLGAIKGVGEGVIQKIVEERQAGAPFVDMNDFCHRVGSQALNKRVLEAMV 883

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
             AGALD  G +R  L   + +  K A  ++        ++F       +  ++ +     
Sbjct: 884  LAGALDTLGPNRASLFAHIPDAMKAASQIQAAEAAGMGDLFGGFDAPETAIRVPIPALEP 943

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR---------GNNIR 996
               + +   E+  LG Y +GHP+  ++  L+ +        +  +          G  + 
Sbjct: 944  WPDAEQLRKEKDTLGLYLTGHPIHAFRDELKSLVSDTLSGLLDKLDIPAPGTFPKGVPVT 1003

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +A + ++++  + + G R  ++T  +     E   
Sbjct: 1004 VAGLAIAERIVRQQNGDRQLFLTLDDGEGRCEVRI 1038


>gi|291539914|emb|CBL13025.1| DNA polymerase III catalytic subunit, DnaE type [Roseburia
            intestinalis XB6B4]
          Length = 1156

 Score = 1052 bits (2720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/1047 (34%), Positives = 578/1047 (55%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F + A AAGI+P
Sbjct: 2    SFTHLHVHTEYSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYKAARAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +          +          +VLL    +GYQ L+++VS+ ++        
Sbjct: 62   ILGCEVYVAPGSRFDR--ELSHGDDRYYHLVLLAENNKGYQNLMKIVSKGFVEG-YYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+ +  L+    EG+I L+   +G + R       + A++    ++K F     ++ LQ 
Sbjct: 119  RVDMEVLETYH-EGIIALSACLAGEVQRYLVRGLYEEAKETAYKYEKCFGKGNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++    + +++++    + LVATN+  +   ED E HD+L+ +     +S ++R R
Sbjct: 178  HGIPEQKTVNAGLMRMSQETGIELVATNDVHYTYAEDAEPHDILLCLQTGKKLSDENRMR 237

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM ++F    +A++NT +IA RC+  ++     LP F   E  D    
Sbjct: 238  YEGGQYFVKSEEEMRALFPYAAQAIDNTQKIADRCNVEIEFGVTKLPHFDVPEGYD---- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GL  R            ++   +LD+EL+VI +M +  YFLIV DFI +
Sbjct: 294  SWTYLNKLCHEGLVRRYPD-------KHEELLPKLDYELSVIQKMGYVDYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ + IPVGPGRGS AGS+ +Y   IT+IDP+R++LLFERFLNP+R++MPD DIDFC +R
Sbjct: 347  ARTHGIPVGPGRGSAAGSLVSYTTGITNIDPIRYNLLFERFLNPERVTMPDIDIDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG + V QI+TFG+L A+  +RDVGR + +PY+  D + K IPN+    
Sbjct: 407  RSEVIDYVIEKYGKDCVTQIVTFGTLAARGVIRDVGRVMDLPYNFCDTIAKNIPNELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   R    +D +V RL++++++LEGL RH S HAAG+VI  + + + VP+ 
Sbjct: 467  ID-KALIMNPELRSMYESDETVKRLIDMAKRLEGLPRHTSMHAAGVVISQKAMDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
            R        TQF M  IE+ GL+K DFLGL+TLT++  ++  +    G+K+D+  I ++D
Sbjct: 526  R-SSDGTITTQFVMTTIEELGLLKMDFLGLRTLTVISDAVKLVEKNHGIKIDVDNIDYND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +    + T    G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   K
Sbjct: 585  KKVLDSIGTGRCDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPKYIKGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E +  +   ++P+L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM KK +  +
Sbjct: 645  NEPESVTYVCKELEPILEPTYGCIVYQEQVMQIVQNLAGYTMGQADNIRRAMSKKKQYVI 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            D +++ F+         G   NGIS+  A  I++ +  FA Y FNKSHAAAYAV++YQTA
Sbjct: 705  DAERQNFVYGNEEQGIKGCIANGISEQAANQIYDSMVDFAKYAFNKSHAAAYAVVAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YPVEF+AA MT  +DN  K+ ++    RQ  I+++ P +N     F    + I Y
Sbjct: 765  YLKYYYPVEFMAALMTSVIDNTRKVAEYIYSCRQMGIKVLSPDINEGEGRFLATKDGIRY 824

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             + AIK +G      I+ E  A+  + +L DF SRV  +++N+R +E+L+ AGA D    
Sbjct: 825  GMYAIKSIGRQVIDIILAEREANGKYTTLSDFLSRVAGREVNKRAVENLIKAGACDGLDG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q+L   + +       +KN      ++F    E+   + ++           ++   
Sbjct: 885  NRQQMLLVYNTLIDNLNQEKKNSLAGQMSLFDLVSEEEKKAYEVRFPNVEEYTKEIKLGF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+ Y+   RK       + +              ++ +  ++  K  
Sbjct: 945  EKEVLGIYLSGHPLEEYEEKWRKNISAVTADFMLDEETNAVKIKDNQSVVIGGIITEKTI 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T++   + ++T  +     E   FP
Sbjct: 1005 KYTKQNKAMAFITVEDLFGTVEVIIFP 1031


>gi|291561482|emb|CBL40281.1| DNA polymerase III catalytic subunit, DnaE type [butyrate-producing
            bacterium SS3/4]
          Length = 1159

 Score = 1051 bits (2719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1046 (36%), Positives = 570/1046 (54%), Gaps = 39/1046 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +  +  +       ++AITD   ++  ++F + A AAG++P
Sbjct: 2    AFTHLHVHTEYSLLDGSSKIGELAARAKELGMDSMAITDHGVMYGVIDFYRAARAAGVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +                     +VLL     GYQ L+++VS+ ++ D      
Sbjct: 62   IIGCEVYVSPGSRFDRETVHGE--DRYYHLVLLAENNTGYQNLMKIVSKGFV-DGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            RI    ++E   EG+I L+   +G + R       + A+       ++FG+   ++ LQ 
Sbjct: 119  RIDEEVMREYH-EGIIALSACLAGEVPRYLEKGLYEDAKAAAKRHLEIFGEGNYFLELQD 177

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H     R     +++L+    +PLVATN+  +++ ED+EAHD+L+ +     VS ++R R
Sbjct: 178  HGIPMQRQVNQGIMRLSKELNIPLVATNDCHYINAEDWEAHDILLCIQTGKKVSDENRMR 237

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM  +F   PEA+ENT +IA RC+  ++     LPRF   E  D    
Sbjct: 238  YEGGQYYVKSEEEMRRLFPYAPEAIENTHKIAERCNVEIEFGVTKLPRFDVPEGYD---- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L +    G  +R               R RLD+EL  I  M +  YFLIV DFI +
Sbjct: 294  SWGYLNHLCDEGFAMRYPNDDGT-------LRARLDYELGTIKSMGYVDYFLIVWDFINF 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + I VGPGRGS AGS+ AY L ITDIDP+R+ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  AKSHGIAVGPGRGSAAGSIVAYCLKITDIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG ++VAQI+TFG+L A+  +RDVGR + +PYS  D++ K++P +    
Sbjct: 407  RQEVIDYVVEKYGKDQVAQIVTFGTLAARGVIRDVGRVMDLPYSLCDQVSKMVPAELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            + L A+  +   +    +D  V +L+++S++LEGL RH S HAAG+VI    + + VP+ 
Sbjct: 467  LDL-ALRKNPELKALYDSDEQVRKLIDMSKRLEGLPRHTSMHAAGVVISRTSIDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            R       VTQF M  +E+ GL+K DFLGL+TLT++Q ++  + +   V +DL  I +DD
Sbjct: 526  RGA-DGTIVTQFTMTTLEELGLLKMDFLGLRTLTVIQDAVKMIKKDHGVDLDLEHIDYDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +    L T    G+FQLES G +  ++ ++P  +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 585  KKVMDSLGTGKNEGVFQLESGGFKTFMKELKPTTLEDIIAGISLYRPGPMDFIPKYLKGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I    P ++P+LK T G I+YQEQVMQI + L+GY+L  +D++RRAM KK    M
Sbjct: 645  NDPESITYTCPQLEPILKPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKAAVM 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K+++ F+         G   NGI +  A  I++ +  FA Y FNKSHAAAYAV++YQTA
Sbjct: 705  AKERQNFVYGNEEEGVKGCIANGIDEKTANQIYDDMTDFAKYAFNKSHAAAYAVVAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YP EF+AA MT  MDN  K+ ++    R   I I+PP +N     F V  N I Y
Sbjct: 765  FLKYYYPKEFMAALMTSVMDNTTKVSEYILACRNMGIPILPPDINEGYSGFSVSGNGIRY 824

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+AIK VG      I+        F +L+DF SR+ +K++N+R LES + +GALD    
Sbjct: 825  GLSAIKSVGRAVVDVIIAERESGGLFKNLDDFVSRMSNKEVNKRTLESFIKSGALDTLPG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFEN 954
            +R Q L    ++ +     +K       + F        D   IT       +       
Sbjct: 885  TRKQKLIVSGDLLESKSKEKKTVMEGQMSFFDIAPEEEKDNFHITFPDVGEYDKQTLLAF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-------NIRLAAMVVSKQQK 1007
            E+  +G Y SGHP++ Y+ +  K       + V    G        N+ +  M+ SK+ K
Sbjct: 945  EKETIGIYVSGHPMEEYRELWEKNVTARTSDFVVDEVGKTIVEDNSNVVIGGMITSKKVK 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+    + ++T  +     E   FP
Sbjct: 1005 TTKTNQLMAFITVEDLVGTVEVLVFP 1030


>gi|203284485|ref|YP_002222225.1| DNA polymerase III, subunit alpha [Borrelia duttonii Ly]
 gi|201083928|gb|ACH93519.1| DNA polymerase III, subunit alpha [Borrelia duttonii Ly]
          Length = 1144

 Score = 1051 bits (2719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1034 (38%), Positives = 598/1034 (57%), Gaps = 22/1034 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL VHS +SLL+GA  + +I+ K        IA+TD  NLF A++F ++A  
Sbjct: 1    MNLKAKFVHLHVHSDFSLLDGAAKIVDIVSKAKEYNMSHIALTDHGNLFGAIKFYREAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G +  +   + LK   +          ++LL    +GY+ L++L S  YL   
Sbjct: 61   AGIKPIVGIEAYMS--NTLKHIKKNDEFGKPYYHLILLAKNEQGYKNLLKLTSVSYLEG- 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 R+    L +  +EGLI ++    G I +    N    A+  +L FK  FGD  Y+
Sbjct: 118  FYYRPRMDRDDLAKY-SEGLICMSACIGGIIPQLILSNRFDDAKNEILWFKNTFGDDFYL 176

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH    +     +++  +   ++ L  +N+S ++++ED  A D+++ +      S  
Sbjct: 177  ELQRHGIKQQDIVNEKLIAYSKELDVQLSVSNDSHYVNKEDATAQDIIVCIGTGAKRSDS 236

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRFIEKECD 301
             R    T + YLK+  EM  +F DLPEAL NT++IA +C+ F ++   PI P +   E  
Sbjct: 237  GRFKMETDEFYLKSPEEMCELFKDLPEALANTLKIAEKCNDFEIKFPGPIFPEYHIPEEF 296

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D Q      L +  + GL+ R A           + ++R  +EL+ I  M F  YFLIV 
Sbjct: 297  DTQG---QYLEHLTLEGLKFRYAN-------ITDNIKERAFYELSTIINMGFEAYFLIVW 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++A  N+IPVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 347  DFIKFAHDNDIPVGPGRGSGAGSIVAYALRITDVDPLKYNLLFERFLNPERVSMPDFDID 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RDEVI+YV  KYG ++VAQIITFG+L+ KA  +DVGR L +P+ Q + + KLIP+
Sbjct: 407  FCFEGRDEVIKYVTKKYGEDKVAQIITFGTLKPKAVFKDVGRVLDIPFVQSNEITKLIPD 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   VSL+ +  D   +E     P  + L+E +  LEG+ RHASTHAAGIVI    L+ 
Sbjct: 467  GPK--VSLREVLKDKALKEYLNKGPVYNELMEAALVLEGMNRHASTHAAGIVIARTSLTD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
             VP+Y+D + D   TQ+ M  +E  GL+K DFLGLKTLTL++ +   +        ++ I
Sbjct: 525  YVPLYKDYKQDTVSTQYTMDLLEDCGLVKMDFLGLKTLTLIKNAEKLIKITDPDFSIATI 584

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
               D +T+ +L+   +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  +
Sbjct: 585  SDSDAKTFKMLSEGRSTSVFQFESEGMQQILKDSKPDNIEDLIALNALYRPGPMQFIPQF 644

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K G ++I   HP +  +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK 
Sbjct: 645  VAAKTGAKRIKYPHPDLTEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKK 704

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            ++EM++ K  FI GA + G  +T+A +IFELL  FA YGFNKSHAAAY++I+YQTA++K 
Sbjct: 705  EDEMNRMKVDFIKGALEKGYDETLASDIFELLKPFAGYGFNKSHAAAYSLIAYQTAYLKA 764

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YP  F+AA++T E++N EK+  + ++ +   I ++ P +N    DF+V  + I Y L  
Sbjct: 765  NYPASFMAANLTNEINNTEKLSYYIEETKSMGINVLRPDINQSFKDFRVVGSDISYGLNG 824

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK +G      I+ E   +  + S EDF  RVD K +N++ LE+ + +G  D  G +R  
Sbjct: 825  IKNIGELMVDLILNERQENGEYKSFEDFIKRVDEKVINKKFLEASIKSGLFDSLGQNRRT 884

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L+++LD +  +    +  +     ++FA +     +      F   +       E+ +LG
Sbjct: 885  LIENLDKLIAFVLENKNAKKQGQNSLFASQN-ILEETFNYNLFEEYSYLELLGFEKELLG 943

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGWVT 1019
            FY SGHPLD YK  L         + +A+ R   ++ A  +   +    +K + R+ +  
Sbjct: 944  FYVSGHPLDPYKSELEFFTNFNVVKDLASRRNTVVKFAGSLNFIRVVHLKKNNARMAFGI 1003

Query: 1020 FSEPAKEYEANFFP 1033
                    E   FP
Sbjct: 1004 VENFEGSIEIVVFP 1017


>gi|82523671|emb|CAI78453.1| DNA polymerase III, alpha subunit [uncultured candidate division WS3
            bacterium]
          Length = 1160

 Score = 1051 bits (2718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1034 (37%), Positives = 594/1034 (57%), Gaps = 27/1034 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  HS YSLL+GA  ++ ++ +    + PA+AITD  ++F A+EF  +A   GI+P
Sbjct: 5    DFVHLHNHSQYSLLDGACRIDRMVQRALEFRMPALAITDHGSMFGAIEFYSEAREHGIKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +    + +          +   ++LL+  AEGY+ L++L S  Y+ D      
Sbjct: 65   IIGMEAYVTPGSHAE--KPAGKGMESYSHLLLLIRNAEGYRNLMKLSSASYV-DGFYYKP 121

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L++ G  GL+  T    G   +     +   A + ++   ++FGD  +Y+ +  
Sbjct: 122  RVDKELLRKYGD-GLLACTACLKGEPAQHVLAGNEDAARESIIELVEIFGDGHVYLEVHN 180

Query: 189  HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
            H   +     Q  V+L     +PLVA N+  ++  E   AHDVL+ +     + + +R  
Sbjct: 181  HGMPEEAVIRQAYVRLGRELGVPLVAANDCHYVRREQAAAHDVLLCIQTGREIDEPNRMR 240

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + Y+K+  EM  +F D P A ENT+E+A +C+  L      +P F   +      +
Sbjct: 241  MPNDEFYMKSPEEMRELFLDCPGAYENTIEVAEKCNLQLDFDHVHMPEFPIPQG---YTD 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GLE R             +   R   EL++I +M F+GYFLIV DFI  
Sbjct: 298  AAAHLEALTREGLEERYET-------VTPEVEARAALELSMIGQMGFAGYFLIVHDFIHE 350

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  IPVGPGRGS A S+ +YAL IT++DPL F L+FERFLNP R SMPDFDIDFC +R
Sbjct: 351  ARRRGIPVGPGRGSAAASIVSYALGITELDPLEFGLVFERFLNPARKSMPDFDIDFCYER 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+E+I YV  KYG E VAQIITFG++QA+AA+RDVGR L+ PYS+VDR+ K++P +    
Sbjct: 411  RNEIIEYVTEKYGRESVAQIITFGTMQARAAIRDVGRVLKFPYSEVDRVAKMVPRELNIT 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+A     +  R +D    +LL+ +  LEGL RHAS HAAG++I    +    P+Y
Sbjct: 471  LE-EALAKTPELKALRDSDERYAKLLDYAGDLEGLARHASVHAAGVIIAPGRIDDWAPLY 529

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            R  + +   TQ+ M  + + GL+KFDFLGL+TLT++  +L  + + RG+ +    IP DD
Sbjct: 530  RSNKGE-ITTQYPMNSLARIGLLKFDFLGLRTLTVIHDALAMIRENRGIDLAPDRIPLDD 588

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
             ETY LL T  T+GIFQ+ESSGMR  L  ++P+ +ED+ A+ +L+RPGP+ + +V  Y  
Sbjct: 589  PETYELLGTGHTVGIFQVESSGMRDLLRKVRPERLEDMTAVNALFRPGPLGSGMVDDYVK 648

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G++K+  IHP + P+L+ET GV+ YQEQVMQI+  L+G+S+S+ADVL  AM KK+ E
Sbjct: 649  RKHGRQKVSYIHPKLAPVLEETYGVMAYQEQVMQISSALAGFSMSQADVLLNAMRKKVVE 708

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M  Q+E F++G  +NGIS+ IAV +F+ +  F+ YGFNK H+A YAV++ +TA++KTH+
Sbjct: 709  QMATQREDFLAGCRENGISERIAVKVFDQMEFFSGYGFNKPHSACYAVLAVRTAYLKTHF 768

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAI 842
              EF+AA++T EMDN +++     + R+  I+++PP VN   V+F+      I + L+A+
Sbjct: 769  APEFMAATLTSEMDNSDRVVALTGECRRLGIRVLPPDVNEGHVEFRATSRGDIQFGLSAV 828

Query: 843  KGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K VG    R ++ A  +   F+ + D  SRVD + +NRRVLESLV AGALD     R Q 
Sbjct: 829  KNVGRAAVRSMVAARREHGSFEDVFDLTSRVDLRLVNRRVLESLVAAGALDGLHGHRAQQ 888

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENI---FAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             +++       Q  +++R +   ++      + G+      L + +     V    E+ V
Sbjct: 889  YEAIGAALDLGQRAQRDRDSGQTSLMDILDTDAGSELRPRRLPEATPWPDGVALAKEKEV 948

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG Y SGHPL  Y+  L         +    +    +RL  ++   +    RKG ++ +V
Sbjct: 949  LGMYVSGHPLARYEKELSTFATATTMDLAEMVDDEPVRLGGIITHVKTTADRKGEQMAFV 1008

Query: 1019 TFSEPAKEYEANFF 1032
            T  +     E   F
Sbjct: 1009 TLEDFTGSVELVVF 1022


>gi|291537379|emb|CBL10491.1| DNA polymerase III catalytic subunit, DnaE type [Roseburia
            intestinalis M50/1]
          Length = 1156

 Score = 1051 bits (2718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1047 (34%), Positives = 578/1047 (55%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F + A AAGI+P
Sbjct: 2    SFTHLHVHTEYSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYKAARAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +          +          +VLL    +GYQ L+++VS+ ++        
Sbjct: 62   ILGCEVYVAPGSRFDR--ELSHGDDRYYHLVLLAENNQGYQNLMKIVSKGFVEG-YYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+ +  L+    EG+I L+   +G + R       + A++    ++K F     ++ LQ 
Sbjct: 119  RVDMEVLETYH-EGIIALSACLAGEVQRYLVRGLYEEAKETACKYEKCFGKGNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++    + +++++    + LVATN+  +   ED E HD+L+ +     +S ++R R
Sbjct: 178  HGIPEQKTVNAGLMRMSQETGIELVATNDVHYTYAEDAEPHDILLCLQTGKKLSDENRMR 237

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM ++F    +A+ENT +IA RC+  ++     LP F   E  D    
Sbjct: 238  YEGGQYFVKSEEEMRALFPYAAQAIENTQKIADRCNVEIEFGVTKLPHFDVPEGYD---- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GL  R            ++   +LD+EL+VI +M +  YFLIV DFI +
Sbjct: 294  SWTYLNKLCHEGLVRRYPD-------KHEELLPKLDYELSVIQKMGYVDYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ + IPVGPGRGS AGS+ +Y   IT+IDP+R++LLFERFLNP+R++MPD DIDFC +R
Sbjct: 347  ARTHGIPVGPGRGSAAGSLVSYTTGITNIDPIRYNLLFERFLNPERVTMPDIDIDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG + V QI+TFG+L A+  +RDVGR + +PY+  D + K IPN+    
Sbjct: 407  RSEVIDYVIEKYGKDCVTQIVTFGTLAARGVIRDVGRVMDLPYNFCDTIAKNIPNELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   R    +D +V RL++++++LEGL RH S HAAG+VI  + + + VP+ 
Sbjct: 467  ID-KALIMNPELRSMYESDETVKRLIDMAKRLEGLPRHTSMHAAGVVISQKAMDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
            R        TQF M  IE+ GL+K DFLGL+TLT++  ++  +    G+K+D+  I ++D
Sbjct: 526  R-SSDGTITTQFVMTTIEELGLLKMDFLGLRTLTVISDAVKLVEKNHGIKIDVDNIDYND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +    + T    G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   K
Sbjct: 585  KKVLDSIGTGRCDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPKYIKGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E +  +   ++P+L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM KK +  +
Sbjct: 645  NEPESVTYVCKELEPILEPTYGCIVYQEQVMQIVQNLAGYTMGQADNIRRAMSKKKQYVI 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            D +++ F+         G   NGIS+  A  I++ +  FA Y FNKSHAAAYAV++YQTA
Sbjct: 705  DAERQNFVYGNEEQGIKGCIANGISEQAANQIYDSMVDFAKYAFNKSHAAAYAVVAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YPVEF+AA MT  +DN  K+ ++    RQ  I+++ P +N     F    + I Y
Sbjct: 765  YLKYYYPVEFMAALMTSVIDNTRKVAEYIYSCRQMGIKVLSPDINEGEGRFLATKDGIRY 824

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             + AIK +G      I+ E  A+  + +L DF SRV  +++N+R +E+L+ AGA D    
Sbjct: 825  GMYAIKSIGRQVIDIILAEREANGKYITLSDFLSRVAGREVNKRAVENLIKAGACDGLDG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q+L   + +       +KN      ++F    E+   + ++           ++   
Sbjct: 885  NRQQMLLVYNTLIDNLNQEKKNSLAGQMSLFDLVSEEEKKAYEVRFPNVEEYTKEIKLGF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+ Y+   RK       + +              ++ +  ++  K  
Sbjct: 945  EKEVLGIYLSGHPLEEYEEKWRKNISAVTADFMLDEETNAVKIKDNQSVVIGGIITEKTI 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T++   + ++T  +     E   FP
Sbjct: 1005 KYTKQNKAMAFITVEDLFGTVEVIIFP 1031


>gi|325289860|ref|YP_004266041.1| DNA polymerase III catalytic subunit, DnaE type [Syntrophobotulus
            glycolicus DSM 8271]
 gi|324965261|gb|ADY56040.1| DNA polymerase III catalytic subunit, DnaE type [Syntrophobotulus
            glycolicus DSM 8271]
          Length = 1157

 Score = 1051 bits (2717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1039 (36%), Positives = 591/1039 (56%), Gaps = 37/1039 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+GA  +N ++ K      PA+AITD   ++  ++F +     GI+PI
Sbjct: 2    FTHLHVHTEYSLLDGAARINKLVKKAGELGMPALAITDHGVMYGVIDFYKACKKQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +      K+T +          +VLL    EGY+ L+++VS  ++        R
Sbjct: 62   IGCEVYVAPG---KLTEKNAGRDDKNYHLVLLAENMEGYRNLVKIVSNAHIEG-FYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
                +L+E  ++GLI L+   +G I      ++ + A +  L +  +F     ++ +Q H
Sbjct: 118  TDKKFLRE-NSKGLIALSACLAGEISELILEDNLEKARETALEYLDIFGKGNFFLEIQDH 176

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D+ +  +++++++    +P+VATN+  ++ + D    DVL+ +     ++ + R   
Sbjct: 177  GLRDQQKVNTEMLKISRMTGIPIVATNDVHYVEKADSFLQDVLLCIQTGKTLNDQTRMSF 236

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 YLK  SEM  +F + PE LE T EIA RC+         LP +   E   +    
Sbjct: 237  EGQEFYLKAHSEMNLLFGEHPEVLEITEEIAARCNVDFAFGTNFLPDYQVPEGFTL---- 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR +       R  Q    +         RL++ELNVI +  +SGYFLIVADF ++A
Sbjct: 293  DQYLREQCAQIFPQRYPQAGEREKG-------RLEYELNVITKTGYSGYFLIVADFCRYA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++N + VGPGRGS A S+ AY L ITDI+PLR  LLFERFLNP+R++MPD DIDF  + R
Sbjct: 346  RENGVTVGPGRGSAAASMVAYLLGITDIEPLRHDLLFERFLNPERITMPDIDIDFDPEGR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D+VI+YV  KYG ++V QIITFG++ AK A+RDVGR L +P S+VD++ K +PN+    +
Sbjct: 406  DKVIKYVTQKYGADKVCQIITFGTMGAKGAIRDVGRVLNIPLSKVDKVAKAVPNELGMTL 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+            +  + RLLEISQ LEG+ RHASTHAAG+VI   PL+  +P+ R
Sbjct: 466  E-RALTVSPDLIRMVSEEEEIKRLLEISQGLEGMPRHASTHAAGVVIAREPLTNYLPLQR 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                  P+TQF MK +E  GL+K DFLGL+ LT++ ++L  + +     +DL+ +P DD 
Sbjct: 525  TA-EGFPMTQFPMKTVEDIGLLKMDFLGLRNLTIISQTLTRIQETQGKTIDLNKLPLDDL 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L+   + G+FQLES GM+  L+ ++P C EDIIA+++LYRPGP++ I  +  RK 
Sbjct: 584  KTYQMLSEGKSSGVFQLESGGMKAILKELKPSCFEDIIAVLALYRPGPMEQIPEFIKRKQ 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
               K+  +HP ++ +L+ T G+I+YQEQVMQIA+ L GYSL  AD+LRRAMGKK ++ MD
Sbjct: 644  -SGKLSYLHPKLEKILQATYGIIVYQEQVMQIARDLGGYSLGRADLLRRAMGKKNRDIMD 702

Query: 727  KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ F+             GA + G+ K  A  IF+L+AKFA+YGFNK HA AYA+ISY
Sbjct: 703  EERQNFVHGLQDDHGEVIVPGAIRLGLKKNEAEEIFDLMAKFAEYGFNKGHATAYALISY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K ++P+EF A+ ++  +   +K+  +  +A+   I I+PP V     DF +    
Sbjct: 763  QTAYLKANFPLEFAASLLSSVIGVSDKVSFYIHEAQNNGITILPPDVQFSYNDFAIEGRA 822

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I + L A++ VG      I+E   + PF SL DF SR+DS+ +N+RV+ESL+ AGA    
Sbjct: 823  IRFGLGAVRNVGAQVVEKIIEERKNGPFRSLYDFISRMDSRMVNKRVMESLIKAGAFQSL 882

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              SR Q L  L+ +   AQ  +++R +   ++F  ++    D   + +    +     + 
Sbjct: 883  -CSRAQALTVLERMLDLAQNRQRDRESGQMSLFDLDEKLEED-FAMPQLDEVSQGDISKL 940

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LG Y + HPL   +   + +        +  +    + L  ++ S +Q  T++G  
Sbjct: 941  EKEYLGLYLTNHPLSSIETQYKDLISSDIATCLEGLEEKKVILCGIITSYRQTITKRGEM 1000

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            +      + +   E   FP
Sbjct: 1001 MATFLLEDLSGTIEVLVFP 1019


>gi|124023285|ref|YP_001017592.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT
            9303]
 gi|123963571|gb|ABM78327.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT
            9303]
          Length = 1171

 Score = 1050 bits (2716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1053 (36%), Positives = 584/1053 (55%), Gaps = 41/1053 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +    A I+P
Sbjct: 2    AFVPLHNHSDYSLLDGATQLPQMVKRAKELGMPALALTDHGVMYGAIELLKLCKNAEIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          + +  +     +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGSIEDPQPKKERRY----HLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L+   +EGLI+ T    G I +A       VA      ++++FG   Y+ 
Sbjct: 118  FARPCIDKELLKAY-SEGLIVATACLGGEIPQAILRGRIDVARDVARWYQEVFGKDFYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V +A    + L+ATN++ +LS+ D EAHD L+ V    ++S + 
Sbjct: 177  VQDHGSPEDRIVNVEIVSIAKELGIELIATNDAHYLSKNDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   Y+K+  EM  +F+D      L EA+ NT  +A +      + +  +PRF   
Sbjct: 237  RLRYTGTEYIKSEQEMGRLFADHLEPDVLQEAIANTAAVAEKVEEYSILGSYQMPRFPIP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E         + L   +  GL  RL             Y +RL +EL V+ +M F  YFL
Sbjct: 297  EG----HSAVSYLHEVSEQGLRQRLK--LATADPIDDHYGERLTYELGVMEQMGFPTYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A++  IPVGPGRGS AGS+ AYAL IT+IDP++  LLFERFLNP+R SMPD 
Sbjct: 351  VVWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVQNGLLFERFLNPERKSMPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC DRR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KL
Sbjct: 411  DTDFCIDRRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKL 470

Query: 479  IPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L A+    + ++ FRE    DP V + ++++ ++EG  +    HAAG+VI
Sbjct: 471  IPVVRGKPAKLAAMIGSDSPNAEFREKYQNDPVVTKWVDMAMRIEGTNKTFGVHAAGVVI 530

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRG 593
               PL  LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +    G
Sbjct: 531  AAEPLDNLVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEISNG 589

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             ++D   +P +D ET+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRPG
Sbjct: 590  ERIDPDQLPPEDPETFALLARGDLEGIFQLESSGMRQIVRDLRPSSLEDISSILALYRPG 649

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRK+G+E I   H  ++P+LKET G+++YQEQ+M+IAQ L+GYSL EAD
Sbjct: 650  PLDAGLIPKFINRKHGREAIDFAHAALEPILKETYGIMVYQEQIMKIAQDLAGYSLGEAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM K +  F+ GAS++G+ K IA  +F+ +  FA+Y FNKSH+ AY  
Sbjct: 710  LLRRAMGKKKVSEMQKHRSIFVEGASRSGVDKKIADELFDQMVLFAEYCFNKSHSTAYGA 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K HYPV ++A+ +T+     +K++++  +     I++MPP VN   +DF   
Sbjct: 770  VTYQTAYLKAHYPVAYMASLLTVNAGASDKVQRYISNCNAMGIEVMPPDVNASGIDFTPA 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             +RI + L+A++ +G    R ++     D PF SL D C R+ S  LNRR LESL+  GA
Sbjct: 830  GDRILFGLSAVRNLGDGAIRQLIANRDGDGPFVSLADLCDRLPSNVLNRRGLESLIHCGA 889

Query: 891  LDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--------ITL 940
            LD      +R QL+  L+ +  +A    ++R +   N+F    G   ++           
Sbjct: 890  LDAIDPESNRAQLIADLELLINWAASRARDRLSGQGNLFDLVAGAADEQTSDELSTAPKA 949

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                    + +   E+ ++GFY S HPL       + +   G            + +  M
Sbjct: 950  APVPDYPPTEKLRLEKELVGFYLSDHPLKQLTAPAQLLAPIGLASLEDQPDKAKVSVITM 1009

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +   +Q  TRKG R+  +   +     EA  FP
Sbjct: 1010 LTEMRQVTTRKGDRMAVLKIEDLTGGCEAVVFP 1042


>gi|294341044|emb|CAZ89439.1| DNA polymerase III subunit alpha [Thiomonas sp. 3As]
          Length = 1146

 Score = 1050 bits (2715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1037 (40%), Positives = 594/1037 (57%), Gaps = 32/1037 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +VHL+ H+ YS+++GAL +++++   A D Q A+AITD NNLF+ + F + A  AG++P
Sbjct: 2    PYVHLRTHTEYSIVDGALRVDDMVPAAARDGQGALAITDFNNLFATVRFYKAALDAGVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC           +             ++LLV    GY  L +L+SR +L +Q +   
Sbjct: 62   IIGC----------DVLLGSARHPGQFTRLLLLVQNRTGYLNLCDLLSRAWLDNQQRGRA 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +   WL+    EGLI L+G   G I +A     +  A         +F  R Y+ LQR 
Sbjct: 112  VVQWEWLEGGLAEGLIALSGAHEGAIGQALLQGDTATARDLARQHAAVFEGRFYIELQRG 171

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
                        V LA    LP+VAT+   FL  +D++AH+  + +A    +    R  +
Sbjct: 172  GHAACEPHVQAAVPLAAELGLPVVATHPVQFLKADDFDAHEARVCIAEGETLGNPRRQRK 231

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   Y K+++EM ++F+D+P AL NTV IA+RC+ +L +  P LP F   +        
Sbjct: 232  FTAQQYFKSQAEMEALFADVPSALANTVAIAQRCNLVLDLGKPQLPLFPTPQG----LTP 287

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                R +A  GLE RLA     A         Y+QRL++EL +IA+M F GYFLIVADFI
Sbjct: 288  AEFFRQQAQDGLEQRLAVLYPQADQCEAARPRYQQRLEYELGIIAKMGFEGYFLIVADFI 347

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAK N  PVGPGRGSGAGS+ AY+L ITD+DPL ++LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 348  NWAKNNGCPVGPGRGSGAGSLVAYSLRITDLDPLEYALLFERFLNPERVSMPDFDIDFCQ 407

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + RD VI YV+ KYG + V+QI TFG++ A+AA+RDVGR L + Y+  D + KLIP  P 
Sbjct: 408  ENRDRVIDYVKEKYGVDAVSQIATFGTMAARAAVRDVGRVLDLSYTFCDGIAKLIPAKPG 467

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              +SL  A+  +    +    +  V +LL+++Q+LEGL R+   HA G++I    L+   
Sbjct: 468  QHISLADALKQEPLLAQRYEEEEEVRQLLDLAQQLEGLPRNIGMHAGGVLIAPGKLTDFC 527

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDLSL 600
            P+Y    S   V+QF+   +E AGL+KFDFLGL TLT+L+     + +         L  
Sbjct: 528  PLYAQPGSTDAVSQFDKDDVEAAGLVKFDFLGLATLTILELGAQLIRRNHPDRADFKLED 587

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD ++Y L+    T+ +FQLES GM+  L   +PD  EDIIALV+LYRPGP+D I  
Sbjct: 588  IPLDDAKSYKLMAKGDTVAVFQLESRGMQGMLRDAKPDRFEDIIALVALYRPGPMDLIPT 647

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  RK GKE +V   P +  +L+ET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMGKK
Sbjct: 648  YCARKAGKEDVVYPDPRMASVLEETYGIMVYQEQVMQVAQVIGGYSLGGADLLRRAMGKK 707

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM + +  F  GA+KNGI    A  IF+L+ KFA YGFNKSHAAAYA+++ QTAWMK
Sbjct: 708  KPEEMAQHRGIFAEGAAKNGIKPEKANEIFDLMEKFAGYGFNKSHAAAYALLAVQTAWMK 767

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYYSL 839
             HYP EFLAA+M++ +D+ +K+K   +DA+   I ++PP VN     F  V    I Y+L
Sbjct: 768  AHYPAEFLAANMSIALDDTDKLKILVEDAQACGINVLPPDVNASQWRFDPVDSKTIRYAL 827

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             AIKG G      ++ A  ++PF SL DF  RVD  +LN+RVLE+L  AGA D     R 
Sbjct: 828  GAIKGNGQAAVEAMIAARQERPFTSLFDFAERVDRTRLNKRVLEALAKAGAFDSLHPERA 887

Query: 900  QLLQSLDNIQKYAQWVEKNR-TNKHENIFAHEKGT----FSDKITLEKFSVENSSVRFEN 954
             ++ +++    YA   E  R      ++FA +        + +  L +    +   +   
Sbjct: 888  AVMAAVETAMDYAAQREAARQQAGLFDLFAADAADGGHNPAHEPRLPEVEPWDLRTKLSF 947

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  +G+Y SGH  D     +R+       + V +     + +A +    +  ++++G R
Sbjct: 948  EKTAIGYYLSGHLFDASAEEVRRFAPTALMDLVDSRD--PVLIAGIAAGVRLVQSQRG-R 1004

Query: 1015 IGWVTFSEPAKEYEANF 1031
            I  +   + +   E   
Sbjct: 1005 IAILALEDRSGAMEIVI 1021


>gi|330427709|gb|AEC19043.1| DNA polymerase III subunit alpha [Pusillimonas sp. T7-7]
          Length = 1163

 Score = 1050 bits (2715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1050 (39%), Positives = 615/1050 (58%), Gaps = 47/1050 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SPSFVHL+VHS +S+++G   + +++ K A   QPA+A+TD +NLF  ++F + A  AG
Sbjct: 6    SSPSFVHLRVHSEFSVVDGIARIPDLVKKAAEYGQPAMALTDLSNLFGFIKFYKAARKAG 65

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI G  + +          Q +        ++LL S  +GY  L EL+SR +L +Q +
Sbjct: 66   VKPIAGSDVWL----------QNEQDRDKPYRLLLLASDQQGYLALCELLSRAWLDNQYR 115

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WLQ  G  GLI+L+GG +G I +     + + A     ++ + F D  ++ L
Sbjct: 116  GRAEIRREWLQ--GKTGLIILSGGRAGDIGQLLEAGNVEEAAVVAASWARAFPDSYFIEL 173

Query: 187  QR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            QR  H G D       ++LA    LP+VAT+   FL  +D+ AH+  + +A    +    
Sbjct: 174  QRSGHEG-DETYVQAAMRLAGRVGLPVVATHPVQFLHADDFRAHEARVCIADGEQLGNAK 232

Query: 245  R-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R  + T + YL + ++M   F+D+P AL NT+EIA+RC+  L +  P LP F   +   +
Sbjct: 233  RVRKYTTEQYLLDSADMELRFADVPSALANTLEIAKRCNLTLVLDKPRLPNFPTPQGVTL 292

Query: 304  QKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                ++ L   A  GL VR+AQ       +      Y +RL +E   I  M F GYFLIV
Sbjct: 293  ----DDYLVQLAEEGLAVRMAQLFPEEAERQEKYPQYLERLQWECKTIIGMGFPGYFLIV 348

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFI W K N +PVGPGRGSGAGS+ AY+L ITD+DP+R+ LLFERFLNP+R+SMPDFDI
Sbjct: 349  ADFINWGKSNGVPVGPGRGSGAGSLVAYSLGITDLDPIRYDLLFERFLNPERVSMPDFDI 408

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQD R+ VI YV+ KYG E V+QI TFG+L AKA +RDVGR L+MPY   D L KLIP
Sbjct: 409  DFCQDNRERVIDYVKQKYGKEAVSQIATFGTLGAKAVVRDVGRVLEMPYMLCDGLSKLIP 468

Query: 481  NDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              PA P +L+ A+ ++  F+E    D  V  L+++++ LEGL R+   HA G++I    L
Sbjct: 469  FSPADPWTLKRALEEEPAFKERYDQDEEVRALIDLARPLEGLTRNIGMHAGGVLIAPGKL 528

Query: 540  SQLVPMYRDVRSDLP-VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            +   P+Y     D   V+QF+   +E AGL+KFDFLGL+ LT+L  ++ ++ Q       
Sbjct: 529  TDFCPLYCQPGVDTSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNEDKRD 588

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             D+  +P DD + Y LL+   T  +FQLES GM++ L+ ++P+  ED+IA+++LYRPGP+
Sbjct: 589  FDIMALPLDDAQAYKLLSDGNTTAVFQLESRGMKELLKNLRPNTFEDVIAMLALYRPGPL 648

Query: 656  DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            ++ +V  + NRK+G+ ++   HP ++P+L+ T GVI+YQEQVM I+Q++ GY+L  AD+L
Sbjct: 649  ESGMVVDFVNRKHGRAEVDYFHPDLEPVLQSTYGVIVYQEQVMLISQIIGGYTLGGADLL 708

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM K +  F  GA + G    +AV +F+L+ KFA YGFNKSH+AAYA+I+
Sbjct: 709  RRAMGKKKAEEMAKHRAIFEKGAVEKGYDADLAVKLFDLMEKFAGYGFNKSHSAAYALIA 768

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTAW+K ++P EFLAA+++ +MD+ +K++ F +D    ++ ++PP VN     F+   +
Sbjct: 769  YQTAWLKYYHPAEFLAATLSSDMDDTDKVQIFWKDCLANSVTVLPPDVNASAYRFEPVAD 828

Query: 834  RI----------YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882
                         Y L A+KG G      I+ A     P+ SL DFC RVD   +NRR +
Sbjct: 829  EFMAKGQPPRTIRYGLGAVKGTGQAAIEEIIRARTEGGPYASLFDFCRRVDRHTVNRRSI 888

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E+L+ AGA D    +R  LL ++ N  + A+  E  R+    ++FA       +   + K
Sbjct: 889  EALIRAGAFDAIAENRAALLATVANAIEAAEQAE--RSANQVSLFADNANDIVED-EVAK 945

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                +   R   E+  LGFYFSGH  D ++  +R+   +      A+        A ++ 
Sbjct: 946  VPAWDLQTRLRQEKAALGFYFSGHLFDAWRDEVRRFAPRPLARLEASRSLQW--FAGVLS 1003

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            S + K TR+G  + +    + + + E   F
Sbjct: 1004 SLRPKMTRRGK-MLYALLDDGSAQVEVAIF 1032


>gi|116070442|ref|ZP_01467711.1| DNA polymerase III subunit alpha [Synechococcus sp. BL107]
 gi|116065847|gb|EAU71604.1| DNA polymerase III subunit alpha [Synechococcus sp. BL107]
          Length = 1172

 Score = 1050 bits (2715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1053 (36%), Positives = 586/1053 (55%), Gaps = 41/1053 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L +++++      PAIA+TD   ++ A+E  +      ++P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPSMVERAKELGMPAIALTDHGVMYGAIELLKLCKGTDLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          + +  +     +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPKKEKRY----HLVVLAKNAIGYRNLVKLTSISHLRGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 +    LQ   +EGLI+ T    G I +A      +VA      ++ +FGD  Y+ 
Sbjct: 118  FSRACVDKDLLQRY-SEGLIIATACLGGEIPQAILRGRPEVARDVARWYQNVFGDDFYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR   S++V++A    + LVATN++ +L+++D EAHD L+ V    ++S + 
Sbjct: 177  IQDHGSPEDRIVNSEIVKIAEELNIQLVATNDAHYLTKQDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   Y+K   EM  +F+D        +A+ NT ++A +      +    +PRF   
Sbjct: 237  RLRYTGTEYIKTEEEMGRLFTDHLDPDVVQKAITNTAKVAEKVEDYDILGKYQMPRFPIP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +           LR   + GL  RL     A    A++Y  R+  EL ++ +M F  YFL
Sbjct: 297  DG----HTAVTYLREVTLQGLRDRLE--LKADDPIAENYADRMSHELEIMEQMGFPTYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A++ +IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 351  VVWDYIRFAREQSIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KL
Sbjct: 411  DTDFCIERRCEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKL 470

Query: 479  IPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L+A+  D      FRE  L DP+V   ++++ ++EG  +    HAAG+VI
Sbjct: 471  IPVVRGKPAKLKAMIGDESPNPEFREKYLGDPAVKHWVDMAMRIEGTNKTFGVHAAGVVI 530

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRG 593
               PL QLVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +    G
Sbjct: 531  AADPLDQLVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVSSG 589

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             ++D   +P  D +T+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRPG
Sbjct: 590  TRIDPDKLPPQDADTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPG 649

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRK+G+E I   H +++P+L ET G+++YQEQ+M+IAQ L+GYSL +AD
Sbjct: 650  PLDAGLIPKFINRKHGREAIDFAHEILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM K +  F+ GA + G+   ++  +F+ +  FA+Y FNKSH+ AY  
Sbjct: 710  LLRRAMGKKKVSEMQKHRGIFVEGAKERGVDVKVSDELFDQMVLFAEYCFNKSHSTAYGA 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K HYPV ++AA +T+     +K++++  +     I++MPP +N   +DF   
Sbjct: 770  VTYQTAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDLNASLIDFTPN 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             +RI + L+A++ +G    R ++E+  +  PF SL D C R+ S  LNRR LESL+  GA
Sbjct: 830  GDRILFGLSAVRNLGDGAIRRLIESRENDGPFRSLADLCDRLPSSVLNRRGLESLIHCGA 889

Query: 891  LDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--------ITL 940
            +D      +R QL+  LD +  +A    K+R +   N+F        D            
Sbjct: 890  MDAMDPNANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAAPAEDDGPTDLSMAPKA 949

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                    S +   E+ ++GFY S HPL    P  R +   G            +    M
Sbjct: 950  APVPDYPPSEKLRLEKDLVGFYLSDHPLKQLTPSSRLLAPIGLGSLEEQPDKAKVSAITM 1009

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +   +Q  TRKG R+  +   +     EA  FP
Sbjct: 1010 ITELRQVTTRKGDRMAILQLEDLTGSCEAVVFP 1042


>gi|58038565|ref|YP_190529.1| DNA polymerase III subunit alpha [Gluconobacter oxydans 621H]
 gi|58000979|gb|AAW59873.1| DNA polymerase III alpha subunit [Gluconobacter oxydans 621H]
          Length = 1140

 Score = 1049 bits (2714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 473/1032 (45%), Positives = 646/1032 (62%), Gaps = 25/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+ HS+YSL +GA+ +  ++   A +  PA+A+TD+ NLF ALEFS    + G+QP
Sbjct: 5    DFVHLRNHSAYSLSQGAIRIPELVSLAAKNGMPAVALTDSGNLFGALEFSLYCRSNGVQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GCQ+ +  +           P      +V+L    EG   L  L S  +L        
Sbjct: 65   IVGCQISLPPRST--------KPGAMSEPLVVLARNEEGLANLQILSSEGFLNGDP-ADP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + + +L +    GL +LTGG+ GPI++         A+  L   ++ F   + V L R 
Sbjct: 116  SVAVDFLCQ-HAAGLFLLTGGNRGPINKLILEEQKSEAQALLSRLEEAFRGNIAVELNRF 174

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                ++  ES ++ +A   ++PLVATN   F   E +EAHD L+ +A    ++++DR  V
Sbjct: 175  GEAGEQEVESVLIPMADQMDIPLVATNECFFPKPEMHEAHDALLCIAQGRTIAEEDRWHV 234

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P  + K  +EM ++F DLPEA +NT+ IA++C+       P+LP   +         EE
Sbjct: 235  SPQAWFKTPAEMRAVFHDLPEACDNTLIIAQKCAVAACTRKPLLPICPKVRE---GSTEE 291

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR  A  GLE RL     A     + Y +RL  EL++IARM F GYFLIVADFIQWAK
Sbjct: 292  ETLRAMAWEGLEKRL-DAINAGEEKRKLYSERLQVELDIIARMGFPGYFLIVADFIQWAK 350

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             ++IPVGPGRGSGAGS+ AYALTITDIDP+ F LLFERFLNP+R+SMPDFDIDFCQDRRD
Sbjct: 351  AHDIPVGPGRGSGAGSLVAYALTITDIDPIPFGLLFERFLNPERVSMPDFDIDFCQDRRD 410

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVIRYV+ +YG  RVAQIITFG LQAKAA+RDVGR L +PY  V+R+ +LIPN+PA PVS
Sbjct: 411  EVIRYVREEYGGSRVAQIITFGKLQAKAAVRDVGRVLGLPYGMVNRVAELIPNNPAKPVS 470

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L  AI  + R +E R +D S+ RL+EI+ +LEGLYRHASTHAAG+VIGDR L +LVP+YR
Sbjct: 471  LSDAIEGEPRLQEMRDSDESLKRLMEIALQLEGLYRHASTHAAGVVIGDRELVELVPLYR 530

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+L++ LDFL ++G+ VDLS IP DD +
Sbjct: 531  DPKSDMLVTQYNMKYVEQAGLVKFDFLGLTTLTILKRGLDFLKEQGITVDLSRIPLDDAK 590

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ +L    T G+FQ E +GMR  L+ M    +ED+IA VSLYRPGP+ NI  Y  RK+G
Sbjct: 591  TFEMLAKGDTAGVFQFEGAGMRDMLKQMAASRLEDLIAGVSLYRPGPMANIPDYCRRKHG 650

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E     H  I  +L+ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI  EM+K
Sbjct: 651  -EPWEPPHEEIRDILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIAAEMEK 709

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+  F  GA+  GI +  AV +F+L+A+FADYGFNKSHAAAYA++SYQTAWMK ++PV F
Sbjct: 710  QRAIFTEGATARGIPQEKAVEVFDLMARFADYGFNKSHAAAYALVSYQTAWMKANHPVAF 769

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAI 842
            LA  M+L  +  +K+   CQ+AR+ NI ++P  +N    DF +     G   I Y+L+AI
Sbjct: 770  LAGCMSLAREKTDKLAALCQEARRMNIPVLPVDINKSLADFSIETLEDGRQGIRYALSAI 829

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            K VG    + ++    D+PF  L DF  R D K LN+  LESL  AGA D     R  + 
Sbjct: 830  KRVGAAAMQSVVACRGDRPFQDLTDFAERCDPKSLNKIQLESLAKAGAFDSLLKERHIVF 889

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             S D + + AQ   + +      +F    G   + + L +        R   E   +GF+
Sbjct: 890  SSADILLRRAQARAQEQQMGQAGLFGG-AGQEREILRLNEGRPWPDFERLSLEASAIGFH 948

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             S HPLD Y+ +LR++G+          +     +++A  VV ++++ TR G ++ WV  
Sbjct: 949  MSAHPLDAYRSVLRRLGVTPSNALENAAKTGTTRVKIAGCVVDRKERPTRTGKKMAWVNL 1008

Query: 1021 SEPAKEYEANFF 1032
            S+     E   F
Sbjct: 1009 SDSGGGCEVTLF 1020


>gi|238917602|ref|YP_002931119.1| DNA polymerase III subunit alpha [Eubacterium eligens ATCC 27750]
 gi|238872962|gb|ACR72672.1| DNA polymerase III subunit alpha [Eubacterium eligens ATCC 27750]
          Length = 1188

 Score = 1049 bits (2714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1077 (32%), Positives = 568/1077 (52%), Gaps = 61/1077 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +  I  +       ++AITD   ++  +EF + A  AGI+P
Sbjct: 2    SFTHLHVHTEYSLLDGSSKIKEITKRAKELGMDSLAITDHGVMYGVIEFYEAAKKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC++ +                     +VLL     GYQ L+++VS+ +         
Sbjct: 62   VLGCEVYVAPGSRFDKG--AGQSEDKYNHLVLLAENNTGYQNLMKIVSKGFTEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L+E   EG+I  +   +G + R       + A    L  + +F     ++ LQ 
Sbjct: 119  RVDKEVLREYH-EGIIATSACLAGEVQRYLSRGMYETARDAALELQDIFGKGNFFLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ Y   Q++++     + LV TN+  +   +D +AHD+L+ +     +S ++R R
Sbjct: 178  HGIAEQHYVNPQLMRMHNETGIELVCTNDVHYTYADDVDAHDILLCIQTGKKLSDENRMR 237

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  YLK+  EM  +F   PEA+ENT +IA RC+  ++     LP F   E     K 
Sbjct: 238  YEGGQFYLKSEEEMAELFKYAPEAVENTHKIAERCNVEIEFGVTKLPAFDVPEA--YGKN 295

Query: 307  EENELRNKAVAGLEVRLAQG------------------------AIAKGYHAQDYRQRLD 342
                L      GL+ R                             I +   + D  QRL 
Sbjct: 296  SWVYLNALCYEGLKKRYPDKTADICIEDIIEQAKASIVADRKDVVIKRAEDSNDIFQRLS 355

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL+VI  M +  YFLIV D+I +AK ++IPVGPGRGS AGS+ +Y L IT +DP++++L
Sbjct: 356  YELSVIYSMGYVDYFLIVWDYINYAKTHDIPVGPGRGSAAGSLVSYCLGITTLDPVKYNL 415

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            +FERFLNP+R+SMPD D+DF  + R +VI YV  KYG E V QIITFG++ A+A ++DVG
Sbjct: 416  VFERFLNPERVSMPDIDVDFAPEGRQKVIDYVIEKYGKECVCQIITFGTMAARAVIKDVG 475

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS-------LQAIADDSRFREARLADPSVDRLLEIS 515
            R + +PY+ VD + K+IP      +         + I  ++ F+    AD +V  L++ +
Sbjct: 476  RVMDLPYAMVDNIAKMIPQKVGVTIDSAMNGDADRDIKPNAEFKALYEADETVRDLIDKA 535

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            ++LEGL RHAS HA+G++I  + + + VP+      ++ VTQF    +E  GL+KFDFLG
Sbjct: 536  KRLEGLPRHASVHASGVLISQKDVGEYVPVAVGA-DNVKVTQFEGPTLEHLGLLKFDFLG 594

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            L+ LT++Q++     Q      +  IP++D   +  ++     GIFQLES GM+  ++ +
Sbjct: 595  LRNLTVIQQTEKCEQQIDPAFSVDNIPYNDKAVFECISQGKCAGIFQLESGGMKNFMKEL 654

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            +PDC+ED+IA +SLYRPGP+D I  Y   K     I    P ++P+L+ T G ++YQEQV
Sbjct: 655  KPDCLEDLIAGISLYRPGPMDFIPQYIKGKENAGNITYECPQLEPILEPTYGCMVYQEQV 714

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAV 747
            MQI + L+GYS   +D +RRAM KK  + M+++++ F+         G  KNGIS+  A 
Sbjct: 715  MQIVRDLAGYSWGGSDNVRRAMAKKKLDVMEQERQNFVYGNEANGVPGCIKNGISEQTAN 774

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             I++ +  FA Y FNKSHAA YAV++YQTA++K H+PV+++A  ++   D   K+ ++  
Sbjct: 775  KIYDEMMDFAKYAFNKSHAACYAVVAYQTAYLKVHFPVQYMAWLISSVTDKTSKVAEYIL 834

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLE 866
             AR+  I I+P  VN    DF V    I +   A+K +G  T   I+E    +  F S++
Sbjct: 835  AAREMGISILPVDVNKSVADFGVEGKNIRFGFNAVKSMGRPTITAIIEERTNNGDFHSMQ 894

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF +R+ +  +N+R +E L+ AGA D FG +R  ++   + +   A    K+  +   ++
Sbjct: 895  DFITRM-AGVINKRTVEHLILAGAFDTFGNTRRGMMNVYERMIDSAVKQNKDAISGQMSL 953

Query: 927  --FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
              FA E+   S ++ +            E E+ VLG Y +GHPLD Y  +  K       
Sbjct: 954  FDFASEEDKQSLEMRVPDIQEFEKEDLLEREKEVLGVYVTGHPLDEYTGMWEKHISARST 1013

Query: 985  ESV--------ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +          + G+   +  ++ + +   T  G ++ ++T  +     E   FP
Sbjct: 1014 DFLIDEETGQAKLMNGSKQTIGGLISNIKVITTGSGQQMAYLTIEDFVGSVEVIMFP 1070


>gi|78184874|ref|YP_377309.1| DNA polymerase III subunit alpha [Synechococcus sp. CC9902]
 gi|78169168|gb|ABB26265.1| DNA polymerase III, alpha subunit [Synechococcus sp. CC9902]
          Length = 1172

 Score = 1049 bits (2714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1053 (36%), Positives = 586/1053 (55%), Gaps = 41/1053 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L +++++      PAIA+TD   ++ A+E  +      ++P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPSMVERAKELGMPAIALTDHGVMYGAIELLKLCKGTDLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          + +  +     +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPKKEKRY----HLVVLAKNAIGYRNLVKLTSISHLRGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 +    LQ   +EGLI+ T    G I +A      +VA      ++ +FG+  Y+ 
Sbjct: 118  FSRACVDKDLLQR-HSEGLIIATACLGGEIPQAILRGRPEVARDVARWYQDVFGEDFYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR   S++V++A   ++ LVATN++ +L+++D EAHD L+ V    ++S + 
Sbjct: 177  IQDHGSPEDRIVNSEIVKIAEELDIQLVATNDAHYLTKQDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   Y+K   EM  +F+D        +A+ NT ++A +      +    +PRF   
Sbjct: 237  RLRYTGTEYIKTEEEMGRLFTDHLDPDVVQKAITNTAKVAEKVEDYDILGKYQMPRFPIP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +           LR   + GL  RL     +    A++Y  R+  EL ++ +M F  YFL
Sbjct: 297  DG----HTAVTYLREVTLQGLRDRLE--LKSDDPIAENYADRMSHELEIMEQMGFPTYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A++ NIPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 351  VVWDYIRFAREQNIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KL
Sbjct: 411  DTDFCIERRCEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKL 470

Query: 479  IPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L+A+  D      FRE    DP V R ++++ ++EG  +    HAAG+VI
Sbjct: 471  IPVVRGKPAKLKAMIGDESPNPEFREKYQGDPVVKRWVDMAMRIEGTNKTFGVHAAGVVI 530

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRG 593
               PL QLVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +    G
Sbjct: 531  AADPLDQLVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVSSG 589

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             ++D   +P  D +T+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRPG
Sbjct: 590  TRIDPDKLPPQDADTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPG 649

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRK+G+E I   H +++P+L ET G+++YQEQ+M+IAQ L+GYSL +AD
Sbjct: 650  PLDAGLIPKFINRKHGREAIDFAHEILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM K +  F+ GA K G+   ++  +F+ +  FA+Y FNKSH+ AY  
Sbjct: 710  LLRRAMGKKKVSEMQKHRGIFVEGAKKRGVDVKVSDELFDQMVLFAEYCFNKSHSTAYGA 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K HYPV ++AA +T+     +K++++  +     I++MPP +N   +DF   
Sbjct: 770  VTYQTAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDLNASLIDFTPN 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             +RI + L+A++ +G    R ++E+  +  PF SL D C R+ S  LNRR LESL+  GA
Sbjct: 830  GDRILFGLSAVRNLGDGAIRRLIESRENDGPFRSLADLCDRLPSSVLNRRGLESLIHCGA 889

Query: 891  LDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--------ITL 940
            +D      +R QL+  LD +  +A    K+R +   N+F        D            
Sbjct: 890  MDAMDPNANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAAPAEDDGPTDLSMAPKA 949

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                    S +   E+ ++GFY S HPL    P  R +   G            +    M
Sbjct: 950  APVPDYPPSEKLRLEKDLVGFYLSDHPLKQLTPSSRLLAPIGLGSLEEQPDKAKVSAITM 1009

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +   +Q  TRKG R+  +   +     EA  FP
Sbjct: 1010 ITELRQVTTRKGDRMAILQLEDLTGSCEAVVFP 1042


>gi|203288019|ref|YP_002223034.1| DNA polymerase III, subunit alpha [Borrelia recurrentis A1]
 gi|201085239|gb|ACH94813.1| DNA polymerase III, subunit alpha [Borrelia recurrentis A1]
          Length = 1144

 Score = 1049 bits (2714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1034 (38%), Positives = 598/1034 (57%), Gaps = 22/1034 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL VHS +SLL+GA  + +I+ K        IA+TD  NLF A++F ++A  
Sbjct: 1    MNLKAKFVHLHVHSDFSLLDGAAKIVDIVSKAKEYNMSHIALTDHGNLFGAIKFYREAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +   + LK   +          ++LL    +GY+ L++L S  YL   
Sbjct: 61   AGIKPIIGIEAYMS--NTLKYIKKNDEFGKPYYHLILLAKNEQGYKNLLKLTSVSYLEG- 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 R+    L +  +EGLI ++    G I +    N    A+  +L FK  FGD  Y+
Sbjct: 118  FYYRPRMDRDDLAKY-SEGLICMSACIGGIIPQLILSNRFDDAKNEILWFKNTFGDDFYL 176

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH    +     +++  +   ++ L  +N+S ++++ED  A D+++ +      S  
Sbjct: 177  ELQRHGIKQQDIVNEKLIAYSKELDVQLSVSNDSHYVNKEDATAQDIIVCIGTGAKRSDS 236

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRFIEKECD 301
             R    T + YLK+  EM  +F DLPEAL NT++IA +C+ F ++   PI P +   E  
Sbjct: 237  GRFKMETDEFYLKSPEEMCELFKDLPEALANTLKIAEKCNDFEIKFPGPIFPEYHIPEEF 296

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D Q      L +  + GL+ R A           + ++R  +EL+ I  M F  YFLIV 
Sbjct: 297  DTQG---QYLEHLTLEGLKFRYAN-------ITDNIKERAFYELSTIINMGFEAYFLIVW 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++A  N+IPVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 347  DFIKFAHDNDIPVGPGRGSGAGSIVAYALRITDVDPLKYNLLFERFLNPERVSMPDFDID 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RDEVI+YV  KYG ++VAQIITFG+L+ KA  +DVGR L +P+ Q + + KLIP+
Sbjct: 407  FCFEGRDEVIKYVTKKYGEDKVAQIITFGTLKPKAVFKDVGRVLDIPFVQSNEITKLIPD 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   VSL+ +  D   ++     P  + L+E +  LEG+ RHASTHAAGIVI    L+ 
Sbjct: 467  GPK--VSLREVLKDKVLKKYLNKGPVYNELMEAALVLEGMNRHASTHAAGIVIARTSLTD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
             VP+Y+D + D   TQ+ M  +E  GL+K DFLGLKTLTL++ +   +        ++ I
Sbjct: 525  YVPLYKDYKQDTVSTQYTMDLLEDCGLVKMDFLGLKTLTLIKNAEKLIKITDPDFSIATI 584

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
               D +T+ +L+   +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  +
Sbjct: 585  SDSDAKTFKMLSEGRSTSVFQFESEGMQQILKDSKPDNIEDLIALNALYRPGPMQFIPQF 644

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K G ++I   HP +  +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK 
Sbjct: 645  VAAKTGAKRIKYPHPDLTEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKK 704

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            ++EM++ K  FI GA + G  +T+A +IFELL  FA YGFNKSHAAAY++I+YQTA++K 
Sbjct: 705  EDEMNRMKVDFIKGALEKGYDETLASDIFELLKPFAGYGFNKSHAAAYSLIAYQTAYLKA 764

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YP  F+AA++T E++N EK+  + ++ +   I ++ P +N    DF+V  + I Y L  
Sbjct: 765  NYPASFMAANLTNEINNTEKLSYYIEETKSMGINVLRPDINQSFKDFRVVGSDISYGLNG 824

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK +G      I+ E   +  + S EDF  RVD K +N++ LE+ + +G  D  G +R  
Sbjct: 825  IKNIGELMVDLILNERQENGEYKSFEDFIKRVDKKVINKKFLEASIKSGLFDSLGQNRRT 884

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L+++LD +  +    +  +     ++FA +     +      F   +       E+ +LG
Sbjct: 885  LIENLDKLIAFVLENKNAKKQGQNSLFASQN-ILEETFNYNLFEEYSYLELLGFEKELLG 943

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGWVT 1019
            FY SGHPLD YK  L         + +A+ R   ++ A  +   +    +K + R+ +  
Sbjct: 944  FYVSGHPLDPYKSELEFFTNFNVVKDLASRRNTVVKFAGSLNFIRVVHLKKNNARMAFGI 1003

Query: 1020 FSEPAKEYEANFFP 1033
                    E   FP
Sbjct: 1004 VENFEGSIEIVVFP 1017


>gi|15893807|ref|NP_347156.1| DNA polymerase III DnaE [Clostridium acetobutylicum ATCC 824]
 gi|15023379|gb|AAK78496.1|AE007566_6 DNA polimerase III, alpha chain (dnaE) [Clostridium acetobutylicum
            ATCC 824]
          Length = 1167

 Score = 1049 bits (2714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1059 (35%), Positives = 583/1059 (55%), Gaps = 54/1059 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YSLL+G+  +  ++++       +IAITD   ++  +EF + A   GI+P
Sbjct: 10   DFVHLHVHTEYSLLDGSGKVKKLVERAKELGMKSIAITDHGAMYGCVEFYKAAKEVGIKP 69

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +    M  +          +VLLV    GY+ L+E+VS   +        
Sbjct: 70   IIGCEIYVAGKS---MHIKHPDAENETYHLVLLVKNEIGYKNLMEIVSTASIEG-FYYKP 125

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+   +L    +EGLI  +    G +      ++ + A+K  L +K+ F D  Y+ LQ H
Sbjct: 126  RVDHEYLMS-HSEGLIASSACFGGEVQSYILKDNLEKAKKAALFYKETFKDGFYLELQYH 184

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D  +    +V ++   ++PL+ATN+  ++++ED  AHD+L+ +     + +++R R 
Sbjct: 185  ALKDDMKVNDTLVNMSKELDIPLIATNDVHYINKEDSIAHDILLCIQTGKTIDEENRMRY 244

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             P+  YLK++ EM   FS + EAL NT +IA  C+F  + H   LP F   E +D     
Sbjct: 245  APEQFYLKSQEEMYEQFSYVKEALLNTSKIADECNFEYKFHESKLPNFPLPEGED----H 300

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+     GL  R               ++RL++EL +I  M +  YFLIV DFI++A
Sbjct: 301  YEYLKKLCYEGLNERY-------NPITDTIKERLEYELGIIKEMGYVDYFLIVWDFIKFA 353

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++N +P GPGRGS AGS+ AY L IT IDP+++SL+FERFLNPDR+SMPD D DFC + R
Sbjct: 354  RENGVPTGPGRGSAAGSIVAYTLGITKIDPIKYSLIFERFLNPDRVSMPDIDSDFCYENR 413

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +VI YV  KYG + V+QI+TFG++ A+  +RDVGRA+   Y +VD++ K+IPN     +
Sbjct: 414  QKVIDYVVEKYGKDCVSQIVTFGTMAARLCIRDVGRAMNYSYGEVDKIAKMIPNVLNINI 473

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   +     D  +  L++IS+KLEGL RH STHAAG+VI  +PL   VP+ +
Sbjct: 474  D-KALEMNPELKAIYDDDDRIKDLIDISRKLEGLPRHTSTHAAGVVISSQPLVNYVPLLK 532

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                +  V QF M  +E+ GL+K DFLGL+TLT++  ++  + Q R + +D+  I FDD+
Sbjct: 533  --NEESIVAQFTMGILEELGLLKMDFLGLRTLTVINDTIKMVKQNRNIDIDIDDIDFDDY 590

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y ++    T+G+FQLES+GM   ++ ++PD +EDIIA +SLYRPGP++ I  Y   KN
Sbjct: 591  GVYKMIGEGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGISLYRPGPMNEIPRYIRNKN 650

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E+I  + P +  +L  T G IIYQEQVMQI + L+GYS+  +D++RRAM KK    M+
Sbjct: 651  NPEEIKYVTPELKHILDVTYGCIIYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHHVME 710

Query: 727  KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +++  FI             G  KNGIS+ IA  IF+ +  FA Y FNKSHAAAYAV++Y
Sbjct: 711  EERHNFIHGVVDENGNVEVPGCIKNGISEKIANEIFDSMMDFASYAFNKSHAAAYAVVAY 770

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +TA++  +YP E+LAA +   M N EK+  + + A +  IQ++PP +N     F V ++ 
Sbjct: 771  ETAYLIHYYPAEYLAAMLNSVMGNSEKVAFYIRCAEELKIQVLPPDINGSYSRFTVKEDT 830

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + LAAIK VG      I+ A      F S  DFC+++D+ ++N+R +ES++ +G  D 
Sbjct: 831  IRFGLAAIKNVGFNVIESIVRARNEKGNFISFTDFCNKIDTSEVNKRAVESIIKSGGFDT 890

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVR 951
             G  R +LL   + I        K       N+F    +      +I        +    
Sbjct: 891  LGVYRSKLLAVFEKIMDGISGQRKKNIKGQMNLFTDFVQDDYEEVEIQYPDIKEFDKKYL 950

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGI-----------------KGYEESVATIRGNN 994
               E+ + G Y SGHPL+ Y+  L+ M                      +E+     G  
Sbjct: 951  LAMEKEMTGLYLSGHPLEDYEETLKNMTSIKISDIVAPQSLEDNDGVKLDENTDVQDGTR 1010

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +  +V S  +K TR  + + ++   +     E   FP
Sbjct: 1011 VIIGGIVTSVTKKVTRSNTMMAFIKLEDMYAAIEVVIFP 1049


>gi|296136875|ref|YP_003644117.1| DNA polymerase III, alpha subunit [Thiomonas intermedia K12]
 gi|295796997|gb|ADG31787.1| DNA polymerase III, alpha subunit [Thiomonas intermedia K12]
          Length = 1146

 Score = 1049 bits (2714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1037 (39%), Positives = 593/1037 (57%), Gaps = 32/1037 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +VHL+ H+ YS+++GAL +++++     D Q A+AITD NNLF+ + F + A  AG++P
Sbjct: 2    PYVHLRTHTEYSIVDGALRVDDMVPAAVRDGQGALAITDFNNLFATVRFYKAALDAGVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC           +             ++LLV    GY  L +L+SR +L +Q +   
Sbjct: 62   IIGC----------DVLLGSARHPGQFTRLLLLVQNRTGYLNLCDLLSRAWLDNQQRGRA 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +   WL+    EGLI L+G   G I +A     +  A         +F  R Y  LQR 
Sbjct: 112  VVQWEWLEGGLAEGLIALSGAHEGAIGQALLQGDTATARDLTRQHAAVFEGRFYFELQRG 171

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
                        V LA    LP+VAT+   FL  +D++AH+  + +A    +    R  +
Sbjct: 172  GHAACEPHVQAAVPLAAELGLPVVATHPVQFLKADDFDAHEARVCIAEGETLGNPRRQRK 231

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   Y K+++EM ++F+D+P AL NTV IA+RC+ +L +  P LP F   E        
Sbjct: 232  FTAQQYFKSQAEMEALFADVPSALANTVAIAQRCNLVLDLGKPQLPLFPTPEG----LTP 287

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                R +A  GLE RLA     A  +      Y+QRL++EL +IA+M F GYFLIVADFI
Sbjct: 288  AKFFRQQAQEGLEQRLAVLYPQADEREAARPRYQQRLEYELGIIAKMGFEGYFLIVADFI 347

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAK N  PVGPGRGSGAGS+ AY+L ITD+DPL ++LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 348  NWAKNNGCPVGPGRGSGAGSLVAYSLRITDLDPLEYALLFERFLNPERVSMPDFDIDFCQ 407

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + RD VI YV+ KYG E V+QI TFG++ A+AA+RDVGR L + Y+  D + KLIP  P 
Sbjct: 408  ENRDRVIDYVKEKYGVEAVSQIATFGTMAARAAVRDVGRVLDLSYTFCDGIAKLIPAKPG 467

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              +++  A+  +    +    +  V +LL+++Q+LEGL R+   HA G++I    L+   
Sbjct: 468  QHITIADALKQEPLLAQRYEEEEEVRQLLDLAQQLEGLPRNIGMHAGGVLIAPGKLTDFC 527

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDLSL 600
            P+Y    S   V+QF+   +E AGL+KFDFLGL TLT+L+     + +         L  
Sbjct: 528  PLYAQPGSTDAVSQFDKDDVEAAGLVKFDFLGLATLTILELGAQLIRRNHPDRADFKLED 587

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD ++Y L+    T+ +FQLES GM+  L   +PD  EDIIALV+LYRPGP+D I  
Sbjct: 588  IPLDDPKSYKLMAKGDTVAVFQLESRGMQGMLRDAKPDRFEDIIALVALYRPGPMDLIPT 647

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  RK GKE +V   P +  +L+ET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMGKK
Sbjct: 648  YCARKAGKEDVVYPDPRMASVLEETYGIMVYQEQVMQVAQVIGGYSLGGADLLRRAMGKK 707

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM + +  F  GA+KNGI    A  IF+L+ KFA YGFNKSHAAAYA+++ QTAWMK
Sbjct: 708  KPEEMAQHRGIFAEGAAKNGIKPEKANEIFDLMEKFAGYGFNKSHAAAYALLAVQTAWMK 767

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYYSL 839
             HYP EFLAA+M++ +D+ +K+K   +DA+   I ++PP VN     F  V    I Y+L
Sbjct: 768  AHYPAEFLAANMSIALDDTDKLKILVEDAQARGINVLPPDVNASQWRFDPVDSKTIRYAL 827

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             AIKG G      ++ A  ++PF SL DF  RVD  +LN+RVLE+L  AGA D     R 
Sbjct: 828  GAIKGNGQAAVEAMIAARQERPFTSLFDFAERVDRTRLNKRVLEALAKAGAFDSLHPERA 887

Query: 900  QLLQSLDNIQKYA-QWVEKNRTNKHENIFAHEKGT----FSDKITLEKFSVENSSVRFEN 954
             ++ +++    YA Q     +     ++FA +        + +  L +    +   +   
Sbjct: 888  AVMAAVETAMDYATQREAARQQAGLFDLFAADAADGGHNPAHEPRLPEVEPWDLRTKLSF 947

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  +G+Y SGH  D     +R+       + V +     + +A +    +  ++++G R
Sbjct: 948  EKTAIGYYLSGHLFDASAEEVRRFAPTALMDLVDSRD--PVLIAGIAAGVRLVQSQRG-R 1004

Query: 1015 IGWVTFSEPAKEYEANF 1031
            I  +   + +   E   
Sbjct: 1005 IAILALEDRSGAMEIVI 1021


>gi|159903240|ref|YP_001550584.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT
            9211]
 gi|159888416|gb|ABX08630.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT
            9211]
          Length = 1171

 Score = 1049 bits (2714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1052 (37%), Positives = 602/1052 (57%), Gaps = 39/1052 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L  HS YSLL+GA  L  ++ +  A   PAIA+TD   ++ A+E  +   + GI+P
Sbjct: 2    GFVPLHNHSDYSLLDGASQLPAMVSRAKALGFPAIALTDHGVMYGAIELLKLCKSEGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ +          + +  +     +V+L     GY+ L++L +  +L     + +
Sbjct: 62   IIGNEMYVVNGSIEDPQPKKERRY----HLVVLAKNDVGYRNLVKLTTISHLNGMRGRGI 117

Query: 130  --RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              R C+   L E   EGLI+ T    G I +A   +   VA+     +KK+FGD  Y+ +
Sbjct: 118  FSRACIDKQLLETYKEGLIISTACLGGEIPQAILRDRIDVAKDVASWYKKVFGDDFYLEI 177

Query: 187  QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    DR   + + ++A    + L+ATN++ +L+++D EAHD L+ V    ++S++ R
Sbjct: 178  QDHGSVEDRIVNTGICRIAKELNIELIATNDAHYLTKDDVEAHDALLCVLTGKLISEEKR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             R T   YLK+  EM  +FSD      + EA+ NTV ++ +      +    +P+F   +
Sbjct: 238  LRYTGTEYLKSEEEMGKLFSDHIESNIIQEAINNTVTVSEKVEEYNILGTYKMPQFPVPD 297

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                  +  + LR  +  GL  RL   ++        Y  RL+ E+ +I +M F  YFL+
Sbjct: 298  G----GQSTDYLRKVSQDGLMTRLKLESLE--MIENKYINRLNSEIKIIEQMGFPDYFLV 351

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D+I++A++N+IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP+R SMPD D
Sbjct: 352  VWDYIRFARENHIPVGPGRGSAAGSLVAYSLGITNIDPVTNGLLFERFLNPERKSMPDID 411

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
             DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PYS  DRL KLI
Sbjct: 412  TDFCIERRGEVIDYVTKRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYSDADRLAKLI 471

Query: 480  PNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            P     P  L  +  D      FRE    DP V + L+++ ++EG  +    HAAG+VI 
Sbjct: 472  PVVRGKPAKLSQMIGDNTPSKDFREKYQNDPLVKKWLDMAIRIEGTNKTFGVHAAGVVIA 531

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
              PL  LVP+ R+      +TQ+ M+ IE  GL+K DFLGLK LT+++K++  +    G 
Sbjct: 532  SDPLDNLVPLQRN-NDGQIITQYFMEDIESLGLLKMDFLGLKNLTMIEKAVTLVEDSLGE 590

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            K+DL  +  DD +TY LL+     GIFQLES+GMRQ ++ ++P  +EDI ++++LYRPGP
Sbjct: 591  KLDLDQLNMDDTKTYELLSKGDLEGIFQLESTGMRQIVKDLRPSSLEDISSILALYRPGP 650

Query: 655  IDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +D   I  + NRK+GKE+I   H  + P+L ET G+++YQEQ+M+IAQ L+GYSL +AD+
Sbjct: 651  LDAGLIPKFINRKHGKEQIDFPHASLAPILGETYGIMLYQEQIMKIAQELAGYSLGQADL 710

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK   EM+K +  F+ GASKNGI+  IA  +FE +  FA+Y FNKSH+ AY  +
Sbjct: 711  LRRAMGKKKVAEMEKHRNFFLEGASKNGINSNIANELFEQMLLFAEYCFNKSHSTAYGAV 770

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            ++QTA++K HYPV ++AA +T+   + +K++++  +     I++MPP VN+  +DF   +
Sbjct: 771  TFQTAYLKAHYPVAYMAALLTVNAGSSDKVQRYISNCNSMGIEVMPPDVNSSGIDFTPNE 830

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            N I + ++A+K +G    R ++++   D  F SL D C R+    LNRR LESL+ +GAL
Sbjct: 831  NHILFGMSAVKNLGDGAIRELIKSREEDGSFISLADLCDRIPPNTLNRRGLESLIHSGAL 890

Query: 892  DCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--------ITLE 941
            D F    +R QLL  LD I ++A    ++R +   N+F     +  ++            
Sbjct: 891  DSFDKKANRAQLLADLDLIIEWATSRARDRISGQGNLFDLASSSSENQTSNSLHTAPKAA 950

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
              S  + + +   E+ ++GFY S HPL       + +              + + + AM+
Sbjct: 951  PVSDYSPTEKLRLEKELIGFYLSDHPLKQLSEPAKLIAPISLGTLEDQRDKSKVSVIAMI 1010

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +   TRKG ++  +   +     EA  FP
Sbjct: 1011 NDMRVVTTRKGDKMAILQIEDLTGSCEAVVFP 1042


>gi|325507930|gb|ADZ19566.1| DNA polymerase III DnaE [Clostridium acetobutylicum EA 2018]
          Length = 1164

 Score = 1049 bits (2714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1059 (35%), Positives = 583/1059 (55%), Gaps = 54/1059 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YSLL+G+  +  ++++       +IAITD   ++  +EF + A   GI+P
Sbjct: 7    DFVHLHVHTEYSLLDGSGKVKKLVERAKELGMKSIAITDHGAMYGCVEFYKAAKEVGIKP 66

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +    M  +          +VLLV    GY+ L+E+VS   +        
Sbjct: 67   IIGCEIYVAGKS---MHIKHPDAENETYHLVLLVKNEIGYKNLMEIVSTASIEG-FYYKP 122

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+   +L    +EGLI  +    G +      ++ + A+K  L +K+ F D  Y+ LQ H
Sbjct: 123  RVDHEYLMS-HSEGLIASSACFGGEVQSYILKDNLEKAKKAALFYKETFKDGFYLELQYH 181

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D  +    +V ++   ++PL+ATN+  ++++ED  AHD+L+ +     + +++R R 
Sbjct: 182  ALKDDMKVNDTLVNMSKELDIPLIATNDVHYINKEDSIAHDILLCIQTGKTIDEENRMRY 241

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             P+  YLK++ EM   FS + EAL NT +IA  C+F  + H   LP F   E +D     
Sbjct: 242  APEQFYLKSQEEMYEQFSYVKEALLNTSKIADECNFEYKFHESKLPNFPLPEGED----H 297

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+     GL  R               ++RL++EL +I  M +  YFLIV DFI++A
Sbjct: 298  YEYLKKLCYEGLNERY-------NPITDTIKERLEYELGIIKEMGYVDYFLIVWDFIKFA 350

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++N +P GPGRGS AGS+ AY L IT IDP+++SL+FERFLNPDR+SMPD D DFC + R
Sbjct: 351  RENGVPTGPGRGSAAGSIVAYTLGITKIDPIKYSLIFERFLNPDRVSMPDIDSDFCYENR 410

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +VI YV  KYG + V+QI+TFG++ A+  +RDVGRA+   Y +VD++ K+IPN     +
Sbjct: 411  QKVIDYVVEKYGKDCVSQIVTFGTMAARLCIRDVGRAMNYSYGEVDKIAKMIPNVLNINI 470

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   +     D  +  L++IS+KLEGL RH STHAAG+VI  +PL   VP+ +
Sbjct: 471  D-KALEMNPELKAIYDDDDRIKDLIDISRKLEGLPRHTSTHAAGVVISSQPLVNYVPLLK 529

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                +  V QF M  +E+ GL+K DFLGL+TLT++  ++  + Q R + +D+  I FDD+
Sbjct: 530  --NEESIVAQFTMGILEELGLLKMDFLGLRTLTVINDTIKMVKQNRNIDIDIDDIDFDDY 587

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y ++    T+G+FQLES+GM   ++ ++PD +EDIIA +SLYRPGP++ I  Y   KN
Sbjct: 588  GVYKMIGEGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGISLYRPGPMNEIPRYIRNKN 647

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E+I  + P +  +L  T G IIYQEQVMQI + L+GYS+  +D++RRAM KK    M+
Sbjct: 648  NPEEIKYVTPELKHILDVTYGCIIYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHHVME 707

Query: 727  KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +++  FI             G  KNGIS+ IA  IF+ +  FA Y FNKSHAAAYAV++Y
Sbjct: 708  EERHNFIHGVVDENGNVEVPGCIKNGISEKIANEIFDSMMDFASYAFNKSHAAAYAVVAY 767

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +TA++  +YP E+LAA +   M N EK+  + + A +  IQ++PP +N     F V ++ 
Sbjct: 768  ETAYLIHYYPAEYLAAMLNSVMGNSEKVAFYIRCAEELKIQVLPPDINGSYSRFTVKEDT 827

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + LAAIK VG      I+ A      F S  DFC+++D+ ++N+R +ES++ +G  D 
Sbjct: 828  IRFGLAAIKNVGFNVIESIVRARNEKGNFISFTDFCNKIDTSEVNKRAVESIIKSGGFDT 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVR 951
             G  R +LL   + I        K       N+F    +      +I        +    
Sbjct: 888  LGVYRSKLLAVFEKIMDGISGQRKKNIKGQMNLFTDFVQDDYEEVEIQYPDIKEFDKKYL 947

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGI-----------------KGYEESVATIRGNN 994
               E+ + G Y SGHPL+ Y+  L+ M                      +E+     G  
Sbjct: 948  LAMEKEMTGLYLSGHPLEDYEETLKNMTSIKISDIVAPQSLEDNDGVKLDENTDVQDGTR 1007

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +  +V S  +K TR  + + ++   +     E   FP
Sbjct: 1008 VIIGGIVTSVTKKVTRSNTMMAFIKLEDMYAAIEVVIFP 1046


>gi|331002659|ref|ZP_08326174.1| hypothetical protein HMPREF0491_01036 [Lachnospiraceae oral taxon 107
            str. F0167]
 gi|330407072|gb|EGG86576.1| hypothetical protein HMPREF0491_01036 [Lachnospiraceae oral taxon 107
            str. F0167]
          Length = 1152

 Score = 1049 bits (2714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1046 (35%), Positives = 575/1046 (54%), Gaps = 37/1046 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +  I+ +       ++AITD   ++  ++F ++A A GI+P
Sbjct: 2    SFTHLHVHTGYSLLDGSCKIKEIIRRAKELNMTSLAITDHGVMYGVIDFYKEAKANGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +      +   +          ++LL    +GY+ L ++VS+ +         
Sbjct: 62   ILGCEVYVSPASRFEKQAK---QGDRYYHLILLAKNNKGYENLTKIVSKGFTEG-FYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI    L++   EG+I L+   +G I +         A K    +K LF  D  Y+ LQ 
Sbjct: 118  RIDFELLEKYH-EGIIALSACLAGEIPKLISRGRDDEARKVAKKYKDLFGEDSFYLELQN 176

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ +    +V++    ++PLVATN+  +++ ED  AHD+L+ +  S  VS  DR R
Sbjct: 177  HGIPEQKFVNQVLVKIGKEFDIPLVATNDIHYINAEDAMAHDILLCIQTSKTVSDSDRMR 236

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +  K+  EM ++F   PEA+ENT +IA  C   ++     LP +   +       
Sbjct: 237  YEGGQFFLKSEDEMKALFPYAPEAIENTAKIADMCEVEIKFGETKLPEYPVPDNM----S 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L +   +G E   +     +    +D + R+ +EL VI +M +  YFLIV D+I +
Sbjct: 293  AKEYLESLCQSGFERNYSADYPNR----EDIKSRMYYELGVIEKMGYIDYFLIVWDYINY 348

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I VGPGRGS AGSV +Y L ITDIDP++++L+FERFLNP+R+SMPD D+DF  +R
Sbjct: 349  ARGKGISVGPGRGSAAGSVVSYCLGITDIDPIKYNLIFERFLNPERVSMPDIDVDFADER 408

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV NKYG ERV QIITFG+LQA+  +RDVGRA+++PY++ D + K+IP D    
Sbjct: 409  RSEVIDYVVNKYGSERVCQIITFGTLQARGVIRDVGRAMEIPYARCDSIAKMIPRDKDIT 468

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            + L A+  +   +E   +D  V  L++ S KLEGL RHAS HAAG+VI  + + + VP+ 
Sbjct: 469  LEL-ALERNKELKELYDSDEVVHELIDYSLKLEGLPRHASIHAAGVVISKKAVDEYVPLA 527

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
              V  D   TQF M  +E+ GL+K DFLGL+TLT+LQ +L  + +   + +DL+ I +DD
Sbjct: 528  LGV-DDAITTQFTMTTLEELGLLKMDFLGLRTLTVLQNTLAMVKKNYNIDLDLNNIDYDD 586

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             + Y  ++T  T  +FQLES+GM+  ++ ++P+ +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 587  KKVYEFISTGKTDAVFQLESAGMQSFMKRLKPENLEDIIAGISLYRPGPMDFIPKYIAGK 646

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N K+K+    P +  +L+ T G I+YQEQVMQI + L+GY++  +D +RRAM KK    M
Sbjct: 647  NSKDKVSYDSPQLVSILEPTYGCIVYQEQVMQIVRDLAGYTMGGSDEVRRAMSKKKAHIM 706

Query: 726  DKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            + +++ FI G  +        NGI + +A  IF+ +  FA Y FNKSHAA YAVISYQTA
Sbjct: 707  EMERKNFIYGNEEKGIKGCINNGIEEQVANRIFDEMIDFASYAFNKSHAACYAVISYQTA 766

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YP EF+AAS+T   DN  K+ ++        I+I+PP VN     F V  + I +
Sbjct: 767  YLKYYYPKEFMAASLTSVSDNPAKLAEYIGSLMDMGIKILPPDVNLGEGAFSVDKDGIRF 826

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+ IKGVG   A  ++     +  + +LE+F +R+  K LN+R +ES + AGALD    
Sbjct: 827  GLSTIKGVGKAVADSLVRERTMNGKYLTLENFINRLPQKDLNKRSIESFIKAGALDGMEG 886

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFEN 954
            +R + + + +          K       + F        D     +            + 
Sbjct: 887  NRHEKILNAELFIDKKSKESKASIPGQISFFDVVSEEERDSFVSDMIHIEEYPKEELLKY 946

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------TIRGNNIRLAAMVVSKQQK 1007
            E  VLG Y SGHPL+ Y  +L K       +             G  + +  ++V   ++
Sbjct: 947  EMEVLGMYVSGHPLEEYISLLEKHCDARSIDFYPDESGNILLESGRKLAVGGLLVEVNKR 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+KG  +   T  +     E   FP
Sbjct: 1007 FTKKGDMMAICTLEDLYGRIELVIFP 1032


>gi|186476833|ref|YP_001858303.1| DNA polymerase III subunit alpha [Burkholderia phymatum STM815]
 gi|184193292|gb|ACC71257.1| DNA polymerase III, alpha subunit [Burkholderia phymatum STM815]
          Length = 1187

 Score = 1049 bits (2713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1042 (38%), Positives = 604/1042 (57%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + +++++D  A D Q A+A+TD  N F  + F ++A   G
Sbjct: 5    SDPRFVHLRVHSEFSIADGIVRIDDVVDAAAKDGQGALALTDLGNAFGLVRFYKEARGKG 64

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 65   VKPIAGCDVWITNPDD----------RDKPSRLLLLVRNKTGYLNLCELLSKAWLTNQYR 114

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  +WL+    EGL+ L+G   G +  A    + + A++    + ++F +  Y+ L
Sbjct: 115  GRAEVETAWLESGLAEGLLALSGAQHGDVGLALAAGNQEAAQRNAQRWAQIFPNGFYIEL 174

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR           Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++   R
Sbjct: 175  QRGGQAGAEAYVQQAVALAASLKLPVVATHPLQFMTPDDFTAHEARVCISEGDILANPRR 234

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T D Y + + EM+++++D+P A+ NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 235  QKRFTTDQYFRTQDEMIALYADIPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL- 293

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RL Q       +    + Y  RLDFE   I +M F GYFLIVA
Sbjct: 294  ---DDYLVQLSKEGLEKRLEQLFPEQAERDAQREGYYARLDFECGTIIKMGFPGYFLIVA 350

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 351  DFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDID 410

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 411  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 470

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LLE++Q++EGL R+   HA G++I    L+
Sbjct: 471  KPGKHVTIADAMKEEPLLKERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLT 530

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 531  DFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 590

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD   + +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPGP+D 
Sbjct: 591  LAQVPLDDPAAFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDL 650

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 651  IPSFCARKHGRETVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 710

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA++NG+++  A   F+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 711  GKKKPEEMAKHREIFAEGAARNGLTREKADETFDLMEKFAGYGFNKSHAAAYALLAYHTA 770

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP +N     F+        
Sbjct: 771  WLKAHHPAEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDINLSAYRFEPVAEADGK 830

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  + PF  + DFC+R+D + +NRR +E+L+ AGA
Sbjct: 831  RSRTIRYGLGAIKGSGQNAIEEILRAREEGPFVDIFDFCNRIDRRVVNRRTIEALIRAGA 890

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QL+ S+    + A     N       +F       S    L          
Sbjct: 891  FDSLHENRAQLIASVSLAMEAADQASANAM--QAGLF-DIGDAPSQGHELVDEPAWPDKR 947

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D YK  +R+   +   E      G +  +A ++VS + + T+
Sbjct: 948  RLQEEKTALGFYLSGHLFDAYKDEVRRFVRQKIGEL---KEGRDKLVAGVIVSLRTQMTQ 1004

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1005 RGK-MLIALLDDGTGQCEVTVF 1025


>gi|296536131|ref|ZP_06898260.1| DNA-directed DNA polymerase III alpha subunit [Roseomonas cervicalis
            ATCC 49957]
 gi|296263543|gb|EFH10039.1| DNA-directed DNA polymerase III alpha subunit [Roseomonas cervicalis
            ATCC 49957]
          Length = 1147

 Score = 1049 bits (2713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 478/1035 (46%), Positives = 661/1035 (63%), Gaps = 22/1035 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS+YSL EGA+    + +   A   PA+A+TDT N+F ALEFS+     G+QP
Sbjct: 3    SFVHLHVHSAYSLAEGAIKAEKLAELAKAGGMPAVALTDTANMFGALEFSKACSGKGVQP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GCQL +            + P      +V L   AEG + +  L S+ +L D      
Sbjct: 63   IMGCQLFLTRGAADDRPEVLRLP---PDPVVALAMDAEGLENVQRLSSQGFLRDDPSGRP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSS-GPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             + L  L++    G+ +LTG S+ GP+ R         A + L   K+ FG DRL V L 
Sbjct: 120  TVTLELLKQ-HAAGVTLLTGPSTTGPLGRLLLEGRRDAALRLLEELKESFGGDRLVVELT 178

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH    +R  +  +V LA    LPL A N+  F   E YEAHD L+ +A    +++ DR 
Sbjct: 179  RHGLEIERALDPALVALADAAGLPLAAANDIYFSKPEMYEAHDALLCIAEGRTLAEPDRR 238

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            RVTP+H+ K+   M ++F+DLPEA +NT+ IARRC+ + +   P LP   + +       
Sbjct: 239  RVTPEHFFKSAEAMRTLFADLPEACDNTLAIARRCAIMAENRKPELPICPKVQ---PGMT 295

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E   +R+ A  GLE RL   A  +      YR RL+FEL++I +M FSGYFLIVADFIQW
Sbjct: 296  EAETVRDMAKRGLEARLDAQATPEAERP-TYRTRLEFELDIIEKMGFSGYFLIVADFIQW 354

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+  IPVGPGRGSGAGSV A+AL ITD+DPLRF LLFERFLNP+R+SMPDFDIDFCQDR
Sbjct: 355  AKQQGIPVGPGRGSGAGSVAAWALLITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQDR 414

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI+YV+ +YG +RVAQIITFG LQAKA +RDVGR + MPY QV+++ +LIP +PA P
Sbjct: 415  RDEVIQYVRREYGEDRVAQIITFGRLQAKAVVRDVGRVMGMPYGQVNKIAELIPFNPAKP 474

Query: 487  VSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+LQ A+  + R +E R AD  VDRL+E +  LEGLYR+ASTHAAG+VIG +PL   V +
Sbjct: 475  VTLQQALDGEPRLQEMRQADEMVDRLMETALVLEGLYRNASTHAAGVVIGRKPLIDTVAL 534

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD RSD+ VTQ++MK++E A L+KFDFLGLKTLT+LQ++++ LA +G+ +DL+ +P DD
Sbjct: 535  YRDPRSDMLVTQYSMKYVENASLVKFDFLGLKTLTVLQRAVEILAGQGITIDLAALPLDD 594

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +TY +L    + G+FQ E  GMR+ L  M+PD  ED+IA VSLYRPGP+ NI  Y  RK
Sbjct: 595  AKTYEMLARGDSAGVFQFEGQGMRECLRMMRPDRFEDLIAAVSLYRPGPMANIPAYCARK 654

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G E    +HP +  +++ET G+++YQEQVMQI+Q ++GYSL  AD+LRRAMGKKI+ EM
Sbjct: 655  HG-EAWEPVHPAMRHLVEETYGILVYQEQVMQISQDVAGYSLGGADLLRRAMGKKIRSEM 713

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            + Q++ F+ GA KNG+ +  A  IF+L+ KFA+YGFNKSHAAAYA+++Y TA++K ++PV
Sbjct: 714  EAQRKIFVDGAVKNGVPEGKAGEIFDLMEKFAEYGFNKSHAAAYALVAYHTAYLKANHPV 773

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLA 840
             FLAASMTL++D  EK+    Q+A +  I ++PP VN    +FKV     G   I ++LA
Sbjct: 774  AFLAASMTLDLDKTEKLANHMQEASRLGIPVLPPDVNRSAAEFKVETMEDGRQAIRFALA 833

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            A+K VG    + ++ A  A  PF S+ +F  RVD K LN+  LE+L  AGA D    +R 
Sbjct: 834  AVKRVGMQAMQDLVRARDAKGPFRSIAEFAGRVDPKLLNKMQLENLARAGAFDSLEKNRA 893

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            ++  + + + + AQ   + R +    +F     +  + + L          R   E   +
Sbjct: 894  RMTMAAEVVLRRAQSSAEERNSSQIGLFGG-GDSRPEPLRLPNVPDWPELERLTQEAEAV 952

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAMVVSKQQKKTRKGSRIGW 1017
            GF+ S HPLD YK +LRK+ +    +  A    G  + ++A  VV+ +++ TR GSR+ W
Sbjct: 953  GFHLSAHPLDTYKEVLRKLRVTSIAQLQAKAEAGAAVLKIAGTVVNSKERTTRTGSRMAW 1012

Query: 1018 VTFSEPAKEYEANFF 1032
            +  S+ +   E   F
Sbjct: 1013 LKLSDSSGSTEVTLF 1027


>gi|291166424|gb|EFE28470.1| DNA polymerase III, alpha subunit [Filifactor alocis ATCC 35896]
          Length = 1151

 Score = 1049 bits (2712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1055 (34%), Positives = 600/1055 (56%), Gaps = 48/1055 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +E+   F HL +H+ YSLL+G  ++ + + K   D   A+AITD   +F  +EF + A  
Sbjct: 1    MERK--FTHLHLHTPYSLLDGFATIEDTIKKAKEDGMDAVAITDHGVMFGVVEFYKVALN 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIGC++ +  +      N  K  +     ++LL     GYQ LI+LVS  ++   
Sbjct: 59   YGIKPIIGCEVYVSYRTRFDKENIDKRSY----HLILLAENNTGYQNLIKLVSLGFVEG- 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
                 R+ +  L+   +EG+I L+   +G + ++   N+ + A+K    ++++F  D  +
Sbjct: 114  YYYKPRVDIDLLKSY-SEGIIALSACLAGEVQQSLLNNNYEEAKKVACRYREIFGEDNFF 172

Query: 184  VNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ H   ++ + + +++ L+    +PLVATN+  +++  D + HD+L+ +     +  
Sbjct: 173  LELQNHGIEEQLKVNHLLRRLSLDTGIPLVATNDVHYVNRSDSKNHDILLCIQTGKTLDD 232

Query: 243  KDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            KDR     D  Y K R EM  +FS   +AL NT +I++RC+     +   LP F      
Sbjct: 233  KDRMEFKTDQFYFKTREEMYQLFSKDEDALLNTWKISQRCNVSFDFNVIHLPEFQVPH-- 290

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 +E         GL+ R               R+R ++E  VI +M +  YFLIV 
Sbjct: 291  --HYTKEQIFDELCERGLQERYFDITPP-------IRERFEYEKKVIKKMGYVEYFLIVQ 341

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+++KKNNI VGPGRGS AGS+ +Y L ITD+DP+++ LLFERFLNP+R+SMPD DID
Sbjct: 342  DFIRFSKKNNIMVGPGRGSAAGSIISYCLQITDVDPIKYHLLFERFLNPERISMPDIDID 401

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++R++VI YV+ KYG + VAQIITFG+  AKAA+RDVGR L + Y++VD++ K IP+
Sbjct: 402  FCYEKREQVIDYVKEKYGEDHVAQIITFGTFGAKAAIRDVGRVLGISYAEVDKIAKQIPD 461

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +  +A+  +S  ++  ++D +V  +++ ++++EGL RHASTHAAG+VI    +  
Sbjct: 462  NLGMTIE-KALEMNSELKKMYVSDNNVRNIIDFAKRIEGLPRHASTHAAGVVISKNTMDY 520

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
             VP+Y     DL  TQF M  +E+ GL+K DFLGL+TLT++QK+L+ + +    K+D S 
Sbjct: 521  YVPLYM--HKDLIATQFPMTTLEELGLLKMDFLGLRTLTVIQKTLEAIEKIYNKKIDFSK 578

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +  ++   + LL+   TLG+FQLES GMR  L+ ++PD  EDI+A +SLYRPGP+++I +
Sbjct: 579  MDTNNTRVFQLLSNGNTLGVFQLESPGMRSFLKELRPDTFEDIVAGISLYRPGPMESIPI 638

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y   KN    I  +H  + P+L+ T+G+++YQEQVMQI + L+GYS + AD++R+AM KK
Sbjct: 639  YIENKNNSNHISYLHESLKPILEVTKGIMVYQEQVMQIVRSLAGYSYARADLVRKAMSKK 698

Query: 721  IKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
              + M++++E F+             G  +NGI + IA  I++ +  FA Y FNKSHA  
Sbjct: 699  KMDVMEEEREYFVYGKISGSGDIEISGCVRNGIPEKIANQIYDEMIDFAKYAFNKSHAVC 758

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+++Y+TA++K  YP  F+A+ MT   D  +K+ ++ ++    NI I+ P +N     F
Sbjct: 759  YAMLAYETAYLKAFYPSCFMASLMTSVSDRSDKVIEYIRECADLNICILKPDINRSNSYF 818

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V  + I Y+LA+IK +G      I++    +  F S EDF  R+  K +++R +ESL+ 
Sbjct: 819  SVEGDHIRYALASIKNIGIKAIDDIVQERNKNGEFQSFEDFIKRIPQKNISKRFVESLIK 878

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVE 946
            AG  D    +R  L+   + +       +K+       +F++++   +  +      S  
Sbjct: 879  AGCFDSIHPNRASLVAGYEKVMDIVHSQKKHSIQGQVTLFSNQEALPNQNLNFFPHISDF 938

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYEES-------VATIRGNNIRLA 998
            +   +   E+  +G Y SGHPLD Y+ +++    I   +          + I    I + 
Sbjct: 939  SIKEKLYMEKETIGLYLSGHPLDEYQDVIKDDTNIVSIDSIKNIPSHQKSEIEKKKIVIV 998

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              ++SK  K T++   + ++T  + +   E   FP
Sbjct: 999  GTILSKMIKYTKQNKIMCFLTIEDFSGSLEVLIFP 1033


>gi|33862920|ref|NP_894480.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT
            9313]
 gi|33634837|emb|CAE20822.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT
            9313]
          Length = 1171

 Score = 1048 bits (2711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1053 (36%), Positives = 585/1053 (55%), Gaps = 41/1053 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +    A I+P
Sbjct: 2    AFVPLHNHSDYSLLDGATQLPQMVKRAKELGMPALALTDHGVMYGAIELLKLCKNAEIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          + +  +     +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGSIEDPQPKKERRY----HLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L+   +EGLI+ T    G I +A       VA      ++++FG   Y+ 
Sbjct: 118  FARPCIDKELLKAY-SEGLIVATACLGGEIPQAILRGRIDVARDVARWYQEVFGKDFYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V +A    + L+ATN++ +LS+ D EAHD L+ V    ++S + 
Sbjct: 177  VQDHGSPEDRIVNVEIVNIAKELGIELIATNDAHYLSKNDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   Y+K+  EM  +F+D      L +A+ NT  +A +      + +  +PRF   
Sbjct: 237  RLRYTGTEYIKSEQEMGRLFADHLEPDVLQKAIANTAAVAEKVEEYSILGSYQMPRFPIP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E         + L   +  GL  RL             Y +RL +EL V+ +M F  YFL
Sbjct: 297  EG----HSAVSYLHEVSEQGLRQRLK--LATTDPIDDHYGERLTYELGVMEQMGFPTYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A++  IPVGPGRGS AGS+ AYAL IT+IDP++  LLFERFLNP+R SMPD 
Sbjct: 351  VVWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVQNGLLFERFLNPERKSMPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KL
Sbjct: 411  DTDFCIERRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKL 470

Query: 479  IPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L A+    + ++ FRE    DP V + ++++ ++EG  +    HAAG+VI
Sbjct: 471  IPVVRGKPAKLAAMIGSDSPNAEFREKYQNDPVVTKWVDMAMRIEGTNKTFGVHAAGVVI 530

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRG 593
               PL  LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +    G
Sbjct: 531  AAEPLDDLVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVSNG 589

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             ++D   +P +D ET+ LL      GIFQLES+GMRQ +  ++P  +EDI ++++LYRPG
Sbjct: 590  ERIDPDQLPTEDPETFALLARGDLEGIFQLESTGMRQIVRDLRPSSLEDISSILALYRPG 649

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRK+G+E I   H  ++P+LKET G+++YQEQ+M+IAQ L+GYSL EAD
Sbjct: 650  PLDAGLIPKFINRKHGREAIDFAHAALEPILKETYGIMVYQEQIMKIAQDLAGYSLGEAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM K +  F+ GAS++G+ + IA  +F+ +  FA+Y FNKSH+ AY  
Sbjct: 710  LLRRAMGKKKVSEMQKHRSIFVEGASRSGVDQKIADELFDQMVLFAEYCFNKSHSTAYGA 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K HYPV ++A+ +T+     +K++++  +     I++MPP VN   +DF   
Sbjct: 770  VTYQTAYLKAHYPVAYMASLLTVNAGASDKVQRYISNCNAMGIEVMPPDVNASGIDFTPA 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             +RI + L+A++ +G    R ++     D PF SL D C R+ S  LNRR LESL+  GA
Sbjct: 830  GDRILFGLSAVRNLGDGAIRQLIANRDGDGPFVSLADLCDRLPSNVLNRRGLESLIHCGA 889

Query: 891  LDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--------ITL 940
            LD      +R QL+  L+ +  +A    ++R +   N+F    G   ++           
Sbjct: 890  LDAIDPESNRAQLIADLELLIHWAASRARDRLSGQGNLFDLVAGAADEQTSDELSTAPKA 949

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
               +    + +   E+ ++GFY S HPL       + +   G            + +  M
Sbjct: 950  APVTDYPPTEKLRLEKELVGFYLSDHPLKQLTAPAQLLAPIGLASLEDQPDKAKVSVITM 1009

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +   +Q  TRKG R+  +   +     EA  FP
Sbjct: 1010 LTEMRQVTTRKGDRMAVLNIEDLTGSCEAVVFP 1042


>gi|210614801|ref|ZP_03290330.1| hypothetical protein CLONEX_02544 [Clostridium nexile DSM 1787]
 gi|210150570|gb|EEA81579.1| hypothetical protein CLONEX_02544 [Clostridium nexile DSM 1787]
          Length = 1156

 Score = 1048 bits (2711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1047 (35%), Positives = 569/1047 (54%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   +F  ++F + A AAGI+P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMFGVIDFYRAAKAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +        ++           +VLL    +GY+ L ++VSR ++        
Sbjct: 62   ILGCEVYVAPGSRFDKSSGASE--DRYYHLVLLAENQKGYENLTKIVSRGFVEG-YYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+ +  L+E   EG+I L+   +G + +       + A+     ++K+F     ++ LQ 
Sbjct: 119  RVDMELLEEFH-EGIIALSACLAGEVQKNLHRGMYEEAKAAAFRYEKIFGKGNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     Q+++L+    + LVATN+  +   ED + HD+L+ +     ++ +DR R
Sbjct: 178  HGMQEQANVNQQLLRLSQDTGIELVATNDVHYTYAEDEKPHDILLCIQTGKKLADEDRMR 237

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  +M ++F    +A+ENT +IA RC   ++     LP++   +       
Sbjct: 238  YEGGQYYVKSEEQMKALFPYALQAIENTQKIADRCHVEIEFGVTKLPKYDVPDG----YT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GLE              ++ R+RL++ELNVI  M +  YFLIV DFI++
Sbjct: 294  SWEYLNKLCYEGLEKNYEN-------PKKELRERLEYELNVIKTMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ ++I VGPGRGS AGS+ +Y L IT+IDP+++ LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 347  ARDHDIMVGPGRGSAAGSIVSYCLGITNIDPIKYQLLFERFLNPERVSMPDIDIDFCFER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG++ A+  +RDVGR + +PY+ VD + K+IP +    
Sbjct: 407  RQEVIDYVVRKYGSDRVVQIVTFGTMAARGVIRDVGRVMNLPYAFVDSISKMIPTELNMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +S  R+    D  V  L+++S++LEGL RH S HAAG+VI  + + + VP+ 
Sbjct: 467  LD-RALTMNSELRDLYENDEQVKNLIDMSKRLEGLPRHTSMHAAGVVISQKSVDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                     TQF M  +E+ GL+K DFLGL+TLT++Q ++    +  G  +D+  I +DD
Sbjct: 526  LGS-DGSVTTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVRLAEKSTGKTIDIDHIDYDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                  + T  T GIFQLES+GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 585  KAVLDSIGTGRTDGIFQLESAGMKSFMKELKPQSLEDIIAGISLYRPGPMDFIPQYIKGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N    I    P + P+L+ T G I+YQEQVMQI + L+GY+L  +D++RRAM KK  + M
Sbjct: 645  NDVNAITYDCPQLKPILEPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKGDVM 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K+++ F+         G   NGIS+ +A  I++ +  FA Y FNKSHAAAYAV++YQTA
Sbjct: 705  QKERQNFVYGNEAEGVPGCIANGISEQVANKIYDEMIDFAKYAFNKSHAAAYAVVAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YPVEF+AA MT  +DN  K+ ++    RQ  I+I+PP +N     F V +  I Y
Sbjct: 765  YLKYYYPVEFMAALMTSVIDNPGKVAEYIYSCRQMGIEILPPDINKGEGKFSVDNGNIRY 824

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAAIK +G      I+ E   +  F +L+DF  R+  K++N+R +ES + +GA D    
Sbjct: 825  GLAAIKSIGKPVIEAIIAEREKNGLFKNLKDFIERLSGKEVNKRTIESFIKSGAFDSLHG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I        K       ++F    E+      I L              
Sbjct: 885  TRKQFMVIYVKILDQVNQERKYSMTGQMSLFDIVDEEQKKEFDIQLPNVGEYEKETMLAF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHP+  Y+   RK       +              G    +  ++ +K  
Sbjct: 945  EKEVLGIYISGHPMQEYEEKWRKNISATTMDFQYDEESGHTKVREGAKEIIGGIITNKTI 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + ++T  +     E   FP
Sbjct: 1005 KHTKTNKTMAFLTIEDLVGTVEVVVFP 1031


>gi|310828648|ref|YP_003961005.1| DNA polymerase III DnaE [Eubacterium limosum KIST612]
 gi|308740382|gb|ADO38042.1| DNA polymerase III DnaE [Eubacterium limosum KIST612]
          Length = 1146

 Score = 1048 bits (2711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1027 (36%), Positives = 597/1027 (58%), Gaps = 43/1027 (4%)

Query: 33   LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
            + +    +  ++A+TD   LF A++F +     GI+P+IGC++ +  +   ++  +    
Sbjct: 1    MKEAKDLEMKSLALTDHGVLFGAVDFYKACLEEGIKPLIGCEVYVSPR---RLDQKEGNI 57

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  +VLL    +GY+ L+++VS  ++ D      R+   +L++   EG+I L+    
Sbjct: 58   DTNPYHLVLLAENNDGYKNLMKVVSEGFI-DGFYYKPRVDHEYLRK-HHEGIICLSACIG 115

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELP 210
            G I R       Q A +    ++ +F     ++ +Q HR   +      ++  +  +++P
Sbjct: 116  GEIPRLIIEGQLQKANEICQMYQDIFGKGNFFLEIQDHRMQKEAQVNEVLIDFSKKYDIP 175

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPE 269
            LVATN+  ++ + D EAHD+L+ +  +  V  ++R R    + YLK+  EM  +F D+PE
Sbjct: 176  LVATNDVHYVRKADAEAHDILLCIQTAASVDDEERMRFPNNEFYLKSPDEMSRLFIDVPE 235

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            A+ENT +IA RC+    + +  LP F   E +         LR    AGL+ R  +    
Sbjct: 236  AIENTNKIAERCNVSFDLESAHLPEFELPEGEP---SAGGYLRKLCEAGLKARYQE---- 288

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                  + ++R+D+EL+VI  M F  YFL+V DFI++AK ++I VGPGRGS AGS+ AY 
Sbjct: 289  ---ITPEIKERMDYELDVIHSMGFDNYFLVVWDFIKYAKDHDIMVGPGRGSAAGSLVAYG 345

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L IT +DPL+++LLFERFLNP+R++MPD D DFC +RR EVI YV  KYG + VAQIITF
Sbjct: 346  LDITTLDPLKYNLLFERFLNPERITMPDIDCDFCYERRQEVIDYVIRKYGADHVAQIITF 405

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSV 508
            G++ A+ A+RDVGRAL MPY+ VD++ K IP  P   ++++ A+ ++S  R+ +  DP V
Sbjct: 406  GTMAARGAVRDVGRALNMPYNAVDKVAKEIPMHPGQNITIERALEENSELRKMKENDPEV 465

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
             +LL++++ +EGL RHASTHAAG+VI D+PL + VP+YR    D+  TQF M  +E  GL
Sbjct: 466  SKLLDMAESMEGLARHASTHAAGVVISDKPLMEYVPLYR--NGDMITTQFPMGLLEDLGL 523

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            IK DFLGL+TLT+++ +L+ +     + ++L  I  +D + Y +L+   TLG+FQLES G
Sbjct: 524  IKMDFLGLRTLTVIRDALENIKHSQGMNINLDNIDLEDPKVYKMLSKGDTLGVFQLESKG 583

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            M   +  +QP+  EDIIA +SLYRPGP+D I  Y   K   E I  +HP+++P+L  T G
Sbjct: 584  MIAFMRDLQPEHFEDIIAGISLYRPGPMDQIPRYIENKKSPEAITYLHPILEPILDVTYG 643

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA----------- 736
             ++YQEQVMQI + ++G+++  +D++RRAM KK  + M+++ E FI G            
Sbjct: 644  CMVYQEQVMQIFRDVAGFTMGRSDLVRRAMSKKKIDVMNQEGEVFIHGEVDENGETVIDG 703

Query: 737  -SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              + G+ + +A  I+  +  FA Y FNKSHAAAYAVI+YQTAW+K +YP EF+AA M+  
Sbjct: 704  AVRRGVPENVAEQIYAEMKDFAKYAFNKSHAAAYAVIAYQTAWLKCYYPTEFMAALMSSV 763

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
            MD+ +K+ K+ +D R+ +I+++PP VN     F V +N+I + L AIKG+G      I+ 
Sbjct: 764  MDDEKKVSKYIEDCRKNDIKVLPPDVNVSYDKFSVKNNKICFGLGAIKGLGKNAIVSIVN 823

Query: 856  ASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
            A   D  F    DFC +VD K LN+R++E L+ +GA D  G +R QLL   + +    Q 
Sbjct: 824  ARETDGAFKGFRDFCEKVDLKALNKRMVEGLIKSGAFDYTGSTRAQLLLGAERMVDQVQR 883

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
             +++R     ++      +   +  L   +      R   E+ VLG Y +GHPL+ Y+  
Sbjct: 884  EKRDRLAGQISLLDFGGNSSLKEDFLPDVAPFTKEQRLALEKEVLGLYVTGHPLEKYENT 943

Query: 975  LRKMG------IKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            L++        +  YE+   +    G  + +  ++   + + TR G  + ++T  +    
Sbjct: 944  LKEKTNLNSSMLDSYEDLRDSGIRDGGAVIIGGLIDDVKNQITRNGKLMAFMTLEDLYGR 1003

Query: 1027 YEANFFP 1033
             E   FP
Sbjct: 1004 LEVVVFP 1010


>gi|170691817|ref|ZP_02882981.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M]
 gi|170143101|gb|EDT11265.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M]
          Length = 1196

 Score = 1048 bits (2711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1042 (39%), Positives = 604/1042 (57%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++++   A D Q A+A+TD  N F  + F ++A   G
Sbjct: 5    SDPRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKG 64

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI GC + I   D+                ++LLV    GY  L EL+S+  L +Q +
Sbjct: 65   VKPIAGCDVWITNPDD----------RDKPSRLLLLVKDRRGYLNLCELLSKASLTNQYR 114

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL+    EGL+ L+G   G I  A    + + A++  L + K+F    Y+ L
Sbjct: 115  GRAEIEAGWLESGLGEGLLALSGAQQGDIGLALAAGNQEAAKRNALHWAKVFPGGFYIEL 174

Query: 187  Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q   +        Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++   R
Sbjct: 175  QRCGQPGGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRR 234

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R TP+ Y + + EM ++F+D+P AL NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 235  QKRFTPEQYFRTQDEMTALFADIPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL- 293

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L + +  GLE RL Q       +      Y QRL+FE   I +M F GYFLIVA
Sbjct: 294  ---DDYLVHLSKEGLEKRLEQLYPDEAERAAQRDTYYQRLEFECGTIIKMGFPGYFLIVA 350

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 351  DFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDID 410

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 411  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPF 470

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LLE++Q++EGL R+   HA G++I    L+
Sbjct: 471  KPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLT 530

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 531  DFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKKDWS 590

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPGP+D 
Sbjct: 591  LAQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDL 650

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 651  IPSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 710

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM + +E F  GA+KNG++   A  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 711  GKKKAEEMAQHRELFRQGAAKNGLTGEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 770

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------ 831
            W+K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP +N     F+        
Sbjct: 771  WLKAHHPAEFMAANMSLAMDDTDKVKILFEDCITNKMTVLPPDINLSAYRFEPVAEPDGK 830

Query: 832  -DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                I Y L AIKG G      I+ A  D PF  + DFC+R+D + +NRR +E+L+ AGA
Sbjct: 831  RSKTIRYGLGAIKGSGQNAIEEILRAREDGPFIDIFDFCNRIDRRVVNRRTVEALIRAGA 890

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QL+ S+    + A+    N       +F       S    L          
Sbjct: 891  FDTLHQNRAQLIASVSLAMEAAEQASANAL--QAGLF-DMGDAPSQGHELVDEPEWPEKK 947

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            + + E+  LGFY SGH  D YK  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 948  KLQEEKAALGFYLSGHLFDAYKDEVRRFVRQKIGEL---KEGRDKLVAGIIASLRTQMTQ 1004

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1005 RGK-MLIALLDDGTGQCEVTVF 1025


>gi|269792442|ref|YP_003317346.1| DNA polymerase III, alpha subunit [Thermanaerovibrio acidaminovorans
            DSM 6589]
 gi|269100077|gb|ACZ19064.1| DNA polymerase III, alpha subunit [Thermanaerovibrio acidaminovorans
            DSM 6589]
          Length = 1132

 Score = 1048 bits (2711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1035 (38%), Positives = 613/1035 (59%), Gaps = 32/1035 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VHS YSLL+GA+    ++D +A+    A+AITD   ++   EF +K  A GI
Sbjct: 2    SVEFVHLHVHSEYSLLDGAIRCGELVDTVASMGMGAVAITDHGVMYGCEEFYEKCVAKGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC++ +D         +G+        +VL      GY+ LI+LVS     D    
Sbjct: 62   KPIIGCEVYVDPNGMDSRDGKGRNN-----HLVLWAEDQVGYKNLIKLVSIANT-DGFYY 115

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNL 186
              R+    L +  ++G+I  +   +G I +         A  R   ++ +FG+   ++ +
Sbjct: 116  KPRVDHRVLSQ-HSKGIIASSACLAGEIPQLLMDGDFDGAVSRANLYRDIFGEGNFFIEI 174

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              ++  ++    +++++LA    LPL+ATN++ +L  ED   HDVL+ V  ++ V   DR
Sbjct: 175  MYNQLPEQAMANAELIRLAKRCSLPLIATNDAHYLRREDASWHDVLLCVQTNSTVDTPDR 234

Query: 246  PRV-TPDHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R  + D YL+   EM S+   ++PEAL NT+ +A RC+  LQ+   +LP F   E + +
Sbjct: 235  YRFGSDDFYLRTPEEMWSLLGGEVPEALRNTLLVAERCNVELQLGHYMLPEFPLPEGETL 294

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                ++ L   A  GL  R+ +         Q+YR RL++EL VI +M F GYF IVAD 
Sbjct: 295  ----DSHLEKMAREGLRARVGE------PIPQEYRDRLEYELGVIKQMGFPGYFCIVADI 344

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I  AK   IP+GPGRGS AGS+ A+ L IT++DP+++ LLFERFLNP+R+SMPD D D  
Sbjct: 345  ITAAKSRGIPIGPGRGSAAGSLVAWCLGITELDPIKYKLLFERFLNPERISMPDIDTDVS 404

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RRDEV+ Y+  KYG +RV+QIITF  +++KAA+RDVGRAL MPY +VDR+ KL+P+  
Sbjct: 405  DKRRDEVLAYIVEKYGIDRVSQIITFDRMKSKAAIRDVGRALAMPYPEVDRVAKLVPD-- 462

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                  +A+      +E   +DP V RL++ +  +EG+ RH S HAAG+VI   PL ++V
Sbjct: 463  GVKSLKEALEKSPDLKEVHSSDPKVRRLVDTASHIEGIARHCSQHAAGVVITPVPLVEMV 522

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
            P+ R +  +  VTQ++M+ +E  GL+K DFLGL+TL++++ +L  + A RG+K+DL  IP
Sbjct: 523  PV-RKIGENQVVTQYSMEPLEHLGLVKMDFLGLRTLSVIEGALRNVEANRGLKIDLRAIP 581

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD +T+ +L    TLG+FQLESSGM+  L  ++PDC ED+IA+++LYRPGP+ + +V  
Sbjct: 582  LDDPKTFDMLQRADTLGVFQLESSGMQDLLRRLRPDCFEDLIAVLALYRPGPLGSGMVDD 641

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  RK+G+  +   HP ++  LKET GVI+YQEQVMQ A  L+GY+L EAD+LRRAMGKK
Sbjct: 642  YIERKHGRSPVTYPHPCLEEALKETYGVILYQEQVMQCAAELAGYTLGEADLLRRAMGKK 701

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              + M+KQ+ +F+ GA   G+   +A +IF  + KFA+YGFNKSH+AAYA+ISYQTA++K
Sbjct: 702  KADVMEKQRSKFVEGAKARGVEPKMAEDIFNSIEKFAEYGFNKSHSAAYALISYQTAYLK 761

Query: 781  THYPVEFLAASMTL-EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
             HY  EFLA+ ++      ++ + ++ ++ R     ++PP +N    DF      I   L
Sbjct: 762  AHYGPEFLASYLSSIVGSRMDILGRYIKEVRNLGYSVLPPDINESQSDFVAVGEVIRLGL 821

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            +A+  VG +    I+ A ++ PF S  DF  RVD + +NR V+E+L+ AGA D    +R 
Sbjct: 822  SAVAKVGDSAVDAILRARSEGPFRSFWDFLCRVDLRTVNRGVIENLIKAGAFDVLCPNRR 881

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
             LL +L+ + + AQ   +   +K  ++F  ++     +  ++     +   R E E+ VL
Sbjct: 882  MLLDNLEGLLEMAQR--RCDPSKQVSLFDGDEEEEE-EPKMDVVDDVDIHQRLEWEREVL 938

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL-AAMVVSKQQKKTRKGSRIGWV 1018
            G Y SGHP +  +  L    +    +  +    N   + A ++   +++ T++G  +G +
Sbjct: 939  GLYISGHPFEQVEGELAPFLVCKISDLRSWRSSNVAPVTAGLLAGIRERYTKRGDPMGIL 998

Query: 1019 TFSEPAKEYEANFFP 1033
               +   + EA  FP
Sbjct: 999  EMEDGDDKVEAVCFP 1013


>gi|114569928|ref|YP_756608.1| DNA polymerase III subunit alpha [Maricaulis maris MCS10]
 gi|114340390|gb|ABI65670.1| DNA polymerase III, alpha subunit [Maricaulis maris MCS10]
          Length = 1147

 Score = 1048 bits (2710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 516/1035 (49%), Positives = 677/1035 (65%), Gaps = 20/1035 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL+V S YS+LEGA+ +  +++       PAIA+TDTNNLF ALEFS+    
Sbjct: 1    MAAQLPFVHLRVRSPYSVLEGAIRMPKMVEACQTHGMPAIALTDTNNLFGALEFSEVLSG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GC     ++  L   + G+   P    +VLL     GY  L+ L S  YL   
Sbjct: 61   AGVQPIVGC----TLKVRLGDPHPGERAEPDGT-LVLLAQDEVGYGNLMALSSAAYLDVD 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G +   I  S + +    GLI LTGG  G ++R         A   L      FGDRLYV
Sbjct: 116  GSEEPHIPFSLVLD-HAAGLIALTGGPDGLLNRLITGGRQPEAATYLDQLASAFGDRLYV 174

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH    +   E  +V  AY  +LPLVATN + F  +  ++AHD L+ ++ S+ VS  
Sbjct: 175  ELQRHGLEAELEAEDWLVGQAYARDLPLVATNEAYFPDQSMHKAHDALLCISESSFVSVA 234

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR RVT DHYL    EM + F+DLPEAL NT+EIARRC+F ++ HAPILP F      + 
Sbjct: 235  DRRRVTADHYLTTPEEMNARFADLPEALTNTIEIARRCAFRVRTHAPILPSFPT----EG 290

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             + E  EL  +A  GL  RLA  +I       DYR RLDFEL++I +M F GYFLIV+DF
Sbjct: 291  GRTEVEELIARAHEGLTDRLA--SINAAAPEADYRARLDFELDIIKQMGFPGYFLIVSDF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK N+IPVGPGRGSGAGS+ AYALTITD+DPLRF LLFERFLNP+R+SMPDFD+DFC
Sbjct: 349  IQWAKNNDIPVGPGRGSGAGSLVAYALTITDLDPLRFGLLFERFLNPERVSMPDFDVDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q+RR EVIRYVQ +YGH+RVAQIITFG+LQA+A +RD GR LQ+P   VDRL K++P +P
Sbjct: 409  QERRGEVIRYVQEQYGHDRVAQIITFGTLQARAVVRDTGRVLQLPLGLVDRLAKMVPANP 468

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A+PV+L QA+  + R RE R  D SVD LL ++ KLEGL+R+ASTHAAG+VIGDR LS+L
Sbjct: 469  ANPVTLAQALDIEPRLREMRRDDESVDTLLTVALKLEGLFRNASTHAAGVVIGDRKLSEL 528

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLI 601
            VP+YRD RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++ ++L ++A  G    D+  +
Sbjct: 529  VPLYRDPRSDIPATQFNMKWVEPAGLVKFDFLGLKTLTVIARALGYIASTGKDVPDIEGL 588

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             FDD  T+ LL +   +G+FQLESSGMR  L+ M+PD IED+IAL+SLYRPGP+ NI VY
Sbjct: 589  DFDDQATFDLLQSGHAIGVFQLESSGMRDTLKKMKPDAIEDLIALISLYRPGPMKNIDVY 648

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             +RK G+ ++  +H  ++ +L ET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKK 
Sbjct: 649  VDRKFGRAEVDCLHADLEGVLSETYGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGKKK 708

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            KEEMDKQK RF+ GA   G+S+  A  IFEL+A+FA YGFNKSHAAAYA I+Y+T ++K 
Sbjct: 709  KEEMDKQKVRFLEGAEAKGVSREKASYIFELVAEFAGYGFNKSHAAAYAAIAYRTGYLKA 768

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YPVEF+AA M+L+  N +K+  F Q+ R+  + + PP VN    DF V +  I ++L A
Sbjct: 769  NYPVEFMAALMSLDAANTDKLSAFFQEVRRMKLDVRPPDVNASQADFSVEEGTIRFALGA 828

Query: 842  IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            I+ VG     HI+E   A+ PF  L DF  RVD +++N+R  E+L  AGA D     R +
Sbjct: 829  IRNVGFVAMEHIVEERTANGPFRDLYDFAERVDPRQVNKRTFENLAKAGAFDSLDPDRAR 888

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSSVRFENEQRVL 959
            ++ S + +   AQ   + R +   ++F         ++  L +     ++ R + E   +
Sbjct: 889  VMASAETLISMAQHAAEQRESAQASLFGGGGEEAQLERPRLPEPDPWTATQRLDAELSAI 948

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGNNI-RLAAMVVSKQQKKT-RKGSRIG 1016
            GFY SGHPLD     L   G+  + E+ A    G    RLA MV  +Q++ + + G R  
Sbjct: 949  GFYLSGHPLDDLTEHLAGRGVVFFAEAPARVADGATALRLAGMVRRRQERVSNKNGERFA 1008

Query: 1017 WVTFSEPAKEYEANF 1031
            W T S+P  E+E   
Sbjct: 1009 WTTLSDPTGEFEVFV 1023


>gi|299143802|ref|ZP_07036882.1| DNA polymerase III, alpha subunit [Peptoniphilus sp. oral taxon 386
            str. F0131]
 gi|298518287|gb|EFI42026.1| DNA polymerase III, alpha subunit [Peptoniphilus sp. oral taxon 386
            str. F0131]
          Length = 1149

 Score = 1048 bits (2710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1048 (35%), Positives = 598/1048 (57%), Gaps = 47/1048 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS YSLL+G+  ++ + +K       AIA+TD  N++  + F +    AGI+P
Sbjct: 3    DFVHLHVHSEYSLLDGSARISELANKAKELNMKAIALTDHGNMYGTIAFYKACKNAGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ I    N ++ ++  + F     ++LL     G++ L+++VS  ++ +      
Sbjct: 63   IIGCEVYIADG-NYRVFDKNMSRF----HLILLAENYTGFKNLMKIVSEGFV-NGYYYKP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI L  L++   EG+I  +   +G + R   +     AE+  L ++K+F     ++ LQ 
Sbjct: 117  RIDLDVLRKYH-EGIIATSACLAGEVQRKLNYGDFTGAEEAALKYEKIFGKGNFFLELQD 175

Query: 189  HRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ + ++ ++ L+   ++PL+ATN+  +L+ ED +AHDVL+ V   T V++++R +
Sbjct: 176  HDIKEQKKVNKYLETLSAKLDIPLIATNDVHYLNREDAKAHDVLLCVQTGTTVNEENRMK 235

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               +  YLK+  EM   FS   +AL NTV+IA RC+  ++ H   LP F           
Sbjct: 236  FQTEEFYLKSIDEMYERFSGNEDALLNTVKIADRCNVNIEFHNLHLPHFEVPAGF----T 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+ LR     GL+ R            ++   R+++E + I  M +  YFLIV DFI++
Sbjct: 292  NESYLRFLVDRGLKERY-------EIINEEISNRVEYEFHTIIDMGYVDYFLIVWDFIRY 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ N I VGPGRGS AGS+ +YAL I DIDPL+F+LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 345  ARDNGIVVGPGRGSAAGSIISYALRIIDIDPLKFNLLFERFLNPERVSMPDIDIDFCYER 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI YV  KYG E VAQI+TFG++ A+ A+RDVGRAL M Y +VD + K +P +    
Sbjct: 405  REEVIEYVIEKYGIENVAQIVTFGTMGARGAIRDVGRALDMSYGRVDYIAKQVPEELNMT 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A+       +    D    RL++++ K+EGL RH STHAAG+VI    ++  VP+ 
Sbjct: 465  IK-DALVVSPSLNKEYNEDEDAKRLIDMALKVEGLPRHTSTHAAGVVISKDAITNYVPLT 523

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            R     +  TQFNM  +E+ GL+K DFLGL+TLT+++ +L+ + +   +++D S +  +D
Sbjct: 524  R--NDKIIATQFNMNELEELGLLKMDFLGLRTLTVIRDALNLIKKNYGIEIDFSSMELND 581

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                ++     TLGIFQ ESSGMR  L+ ++PD  ED++A  +L+RPGP++ I  +   K
Sbjct: 582  SNVLNMFAKAETLGIFQFESSGMRAFLKDLKPDAFEDLVAANALFRPGPMNQIPKFIESK 641

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +   KI  +H  ++ +LK T G I+YQEQVMQI Q + GYSL  AD++RRAM KK    M
Sbjct: 642  HNLNKISYVHEKLEDILKSTYGCIVYQEQVMQIVQKIGGYSLGRADLVRRAMSKKKMAVM 701

Query: 726  DKQKERFI-----------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +++++ FI            GA +NG+ +  A  I++L+  FA Y FNKSH+ AY+V++Y
Sbjct: 702  EEERQNFIYGKIENGKKICCGAIENGVDEASANKIYDLMIDFAKYAFNKSHSVAYSVVAY 761

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +TA++K +YP EF+AA ++  M  V ++  + ++ ++  I+++PP VN     F V  N 
Sbjct: 762  RTAYLKYYYPTEFMAAQISSYMGKVTQVTLYIEECKRLGIEVLPPDVNESFKHFTVEGNN 821

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGAL 891
            I + L AIK +       I  A     F S  DF  RV   +S+ +N+R +E L+ +GAL
Sbjct: 822  IRFGLKAIKNMNENFISTIEIARKAGKFSSFNDFVKRVCEINSQAINKRAMEYLIKSGAL 881

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D  G +R Q L   +          KN      ++F  +  ++ DK  L K    +++ +
Sbjct: 882  DSLGGNRAQYLAIYEKTIDNVIGNLKNNVKGQFSLF--DTNSYEDKEVLPKLRDFSTNEK 939

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKG----YEESVATIR--GNNIRLAAMVVSKQ 1005
             + E+ +LG Y SGHPLD Y   ++ M +      +E S   +R   + +++  ++ +K+
Sbjct: 940  LDFEKEILGIYVSGHPLDAYIETIKNMNVTNTSIIFENSKNAMRKTDSYVKIVGLLKNKK 999

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               T+    + + +  +   + E   FP
Sbjct: 1000 TMITKNKKIMAFASLEDLYGQIELVIFP 1027


>gi|254360522|ref|ZP_04976671.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            PHL213]
 gi|153091062|gb|EDN73067.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            PHL213]
          Length = 1142

 Score = 1048 bits (2710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1031 (39%), Positives = 599/1031 (58%), Gaps = 38/1031 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            ++ G   + +++   AA+   A+ +TD  N    ++F  +A  AGI+PIIG  + +  + 
Sbjct: 1    MINGLAKVKSLVKTAAANNMVAMGLTDFINFCGLVKFYGEALGAGIKPIIGADVYVRTES 60

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
              +              + LL    +GY  + +++S+ Y     +    +   WL E+  
Sbjct: 61   GNE----------DYFELTLLAKNNKGYHNITQILSKAYQQGYVEF-PMVEREWLAEL-N 108

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQV 200
            EG+I+L+GG  G + +A    + Q AE++L  +++ + +  Y+++ R    D  R   Q 
Sbjct: 109  EGIIILSGGRMGDVGKALLKENRQEAEEKLAFYQQYYPNHFYLSVCRTGRADEERYIKQA 168

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+ +  + +PLVA N+ +FL E+D++AH++ +A+  S  +    RP+  +P  Y +   E
Sbjct: 169  VEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPKQYFRTEEE 228

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+DLP AL NTVEIA+RCS  +++    LP F   E        E+ L  K+  GL
Sbjct: 229  MCKLFADLPSALANTVEIAKRCSVTVRLGEYFLPNFPTGEL-----STEDFLVKKSKEGL 283

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +      Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGP
Sbjct: 284  EERLEFLFPDPEERANKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 343

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D RD VI +V  
Sbjct: 344  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 403

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLIP DP   +  +A A + 
Sbjct: 404  TYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPGMTLE-KAFAAEP 462

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 463  KLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLHPVT 522

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611
             F+   +E AGL+KFDFLGL+TLT+++ +L+ + +R        + +  IP DD +++ L
Sbjct: 523  HFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINERLAREGKEPIRIETIPLDDKKSFAL 582

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+++ +   + +RK+GKE
Sbjct: 583  LLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGKE 642

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++        H  + P+L+ T GVI+YQEQVMQIAQ L+GY+L  AD+LRRAMGKK  EE
Sbjct: 643  EVSYPDPQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEE 702

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M  Q+E F  GA   GI   +A  IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 703  MAAQREVFEKGAEAKGIDGKLAGQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 762

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT EMDN +KI  F  +     + ++PP VN+    F V +     Y L AIK
Sbjct: 763  AEFMAAVMTSEMDNTDKIVGFYDECMNMGLTVVPPDVNSGKHRFSVNEKGEIVYGLGAIK 822

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+ A   +  F  L D  +RVD KK+NRR  ESL+ +GA D  G  R  L+
Sbjct: 823  GVGEGPIEAILAARQKEGKFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAALM 882

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGF 961
            ++L++  K +    K       ++F     T  + +         +  V  + E+  LG 
Sbjct: 883  KNLEDALKASDQHAKMEELGQSDMFGVLTETPEEVQNAYANTPKWSEQVILDGERATLGL 942

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y SGHP+  +   L         E   T RG    ++ +V++ +   T++GSRIG  T  
Sbjct: 943  YLSGHPIGRFLKELSHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVTKRGSRIGIATIE 1002

Query: 1022 EPAKEYEANFF 1032
            + + + +   F
Sbjct: 1003 DRSGKLDITLF 1013


>gi|157413280|ref|YP_001484146.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT
            9215]
 gi|157387855|gb|ABV50560.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT
            9215]
          Length = 1165

 Score = 1048 bits (2709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1048 (36%), Positives = 604/1048 (57%), Gaps = 36/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L  HS YSLL+GA  ++ I+D+ +     +IA+TD   ++  L+  +K     I+P
Sbjct: 2    GFVPLHNHSDYSLLDGASQISKIVDRASDLGMESIALTDHGVMYGVLDLVKKCKEKNIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          + +  +     +V+L     GY+ L++L +  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPKKEKRY----HLVVLAKNYTGYKNLVKLTTISHLNGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I  S L +  ++GLI+ T    G I +A       VAE   + +KK+F D  Y+ 
Sbjct: 118  FSRPCIDKSLLSKY-SDGLIVSTACLGGEIPQAILKGRLDVAEDIAIWYKKIFSDDFYLE 176

Query: 186  LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    +++++   H++ ++ATN++ +LS  D EAHD L+ V    ++S + 
Sbjct: 177  IQDHGSIEDRIVNVELIKIGKKHQIKVIATNDAHYLSNMDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   Y+K+ +EM+ +F D      + EA+ NTVEI+++           +P+F   
Sbjct: 237  RLRYTGTEYIKSENEMLELFKDHIDDVSINEAVNNTVEISQKVEVFDLFGNYRMPKFPLN 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E  D      + L   +  GL  RL +         + Y++RL  EL +I  M F  YFL
Sbjct: 297  EDTD----SFSLLTQLSNEGLLKRLKKNNFT--EVDESYKKRLSTELKIIKDMGFPDYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A+ N+IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP R SMPD 
Sbjct: 351  VVWDYIKFARDNSIPVGPGRGSAAGSLVAYSLQITNIDPVEHGLLFERFLNPARKSMPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC DRR+EVI YV N+YG ++VAQIITF  + +KA L+DV R L +PY + D+L KL
Sbjct: 411  DTDFCIDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADKLAKL 470

Query: 479  IPNDPAHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L  + D       FR+  + D  V + ++++ ++EG  +    HAAG+VI
Sbjct: 471  IPVVRGKPYKLNEMIDKNSPSQEFRDKYINDNRVKKWVDLALRIEGTNKTYGVHAAGVVI 530

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
               PL +LVP+ R+      +TQ++M  IE  GL+K DFLGLK LT++ K++  + Q  G
Sbjct: 531  ASDPLDELVPLQRN-NEGQIITQYSMDDIESLGLLKMDFLGLKNLTMIDKTVSLINQSTG 589

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              +++  +P +D +T+ L+      GIFQLESSGM+Q ++  +P+ +EDI ++++LYRPG
Sbjct: 590  KIINVDDLPQNDSKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALYRPG 649

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRKNG EK+   HP I  +L ET G+++YQEQ+M+IAQ L+GYSL +AD
Sbjct: 650  PLDAGLIPKFINRKNGNEKVDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSLGDAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM K +  F+ G+ K G+++ +A ++F+ +  FA+Y FNKSH+ AY  
Sbjct: 710  LLRRAMGKKKVSEMVKHRNIFVKGSMKKGVNEKLANDLFDQMVLFAEYCFNKSHSTAYGA 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K H+PV ++AA +++   + +K++++  +    NI+++ PS+N   VDF + 
Sbjct: 770  VTYQTAFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMNIEVISPSINFSGVDFTIK 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            +N+I + L+AIK +G +  R+I+E       F+SL D C R+ S  LN+R LESL+  GA
Sbjct: 830  NNQILFGLSAIKNLGESAIRNIIENRNSFGIFESLSDLCDRLPSNVLNKRSLESLIHCGA 889

Query: 891  LDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG---TFSDKITLEKFSV 945
            LD F    +R QLL  L+++  +A    ++R +   N+F  ++           L+K   
Sbjct: 890  LDEFSNDNNRAQLLSDLEHVIDWASSRNRDRLSGQGNLFDSKEEFSNVAFLDTQLKKVDD 949

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +   + + E+++LGFY S HPL       + +      +   T     + L  M+   +
Sbjct: 950  YSLIEKLKLEKQLLGFYLSDHPLKHLAKPAKLISPINISQLEETKDRTKVSLVVMIPDLK 1009

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q  TRKG R+  V   + +   EA  FP
Sbjct: 1010 QITTRKGDRMAIVQLEDLSGSCEAIVFP 1037


>gi|82946509|dbj|BAE51373.1| DNA polymerase III, alpha subunit [Magnetospirillum magneticum AMB-1]
          Length = 1118

 Score = 1048 bits (2709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 488/1011 (48%), Positives = 669/1011 (66%), Gaps = 31/1011 (3%)

Query: 41   QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
             PA+ ITDT NLF ALEFS     AGIQPI+G Q+ I  +D    +  G+ P P    +V
Sbjct: 1    MPAVGITDTANLFGALEFSTSCSDAGIQPIVGAQIAIRREDG-GPSKDGRKPEPDT--LV 57

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            LL     GY  L++LVS+ +L     ++ ++ L  L E  ++GLI+LTGG +GP+ R   
Sbjct: 58   LLCQNEAGYLNLLKLVSKAFLETDAGETPQVTLHDL-ETRSDGLIVLTGGPAGPVGRLLA 116

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLF 219
               ++ AE  L    + F  R YV L RH    +   E  +V LAY H+LPLVATN + F
Sbjct: 117  DGQTEKAEIVLARLARAFAGRCYVELMRHNLEVEDRIEPLLVSLAYKHDLPLVATNEAFF 176

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
                 YEAHD L+ +A    +SQ +R R+TP+HY K+  EM ++F+DLPEA +NT+ IAR
Sbjct: 177  ADRGMYEAHDALVCIAEGAYISQDERRRLTPEHYFKSPEEMRALFADLPEACDNTLVIAR 236

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--- 336
            RC+F +    PILP +           E   LR K   GLE RL +    +G    +   
Sbjct: 237  RCAFGVAKRKPILPPYRMD-----GLTEAEVLRKKTWEGLEARLEKHVFKEGMTDDEKEH 291

Query: 337  ----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
                YR+R++FELNVI  M F GYFLIV+DFIQW+K   IPVGPGRGSGAGS  A+ALTI
Sbjct: 292  AAKPYRERIEFELNVIEEMGFPGYFLIVSDFIQWSKAQEIPVGPGRGSGAGSAVAWALTI 351

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            TD+DPLR+ LLFERFLNP+R+SMPDFDIDFCQDRR+E IRYVQ KYG+ +VAQIITFG L
Sbjct: 352  TDLDPLRWGLLFERFLNPERVSMPDFDIDFCQDRREETIRYVQGKYGYSQVAQIITFGKL 411

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRL 511
            QA+A LRDVGR LQMPY QVDR+CKL+PN+PA+P++L QA+  +   +E +  D +V  L
Sbjct: 412  QARAVLRDVGRVLQMPYGQVDRICKLVPNNPANPMTLEQALESEPLLKEQKERDEAVSHL 471

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            ++++ KLEGLYRHASTHAAG+VIGDRPL +LVP+YRD RSD+PVTQFNMKW+E AGL+KF
Sbjct: 472  IDLAMKLEGLYRHASTHAAGVVIGDRPLDELVPLYRDPRSDMPVTQFNMKWVESAGLVKF 531

Query: 572  DFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            DFLGLKTLT++  ++  + + +G+ +DLS IP DD ++Y LL+     G+FQLESSGMR 
Sbjct: 532  DFLGLKTLTVMVTAVKHVKKTKGIDIDLSAIPLDDAKSYELLSRGDAAGVFQLESSGMRD 591

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
             L  M P+ +ED+IA+V+LYRPGP+D I  Y   K+GKE+   +HPL++P+LKET G+++
Sbjct: 592  VLRKMGPNRLEDLIAVVALYRPGPMDQIPRYIACKHGKEEPDYMHPLLEPILKETFGIMV 651

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVMQIAQ+LSGYSL  AD+LRRAMGKK +EEMD+Q+ +F+ GA+   +    A  IF
Sbjct: 652  YQEQVMQIAQVLSGYSLGGADLLRRAMGKKDREEMDRQRAKFVEGATARAVDGGQASMIF 711

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            + +AKFA+YGFNKSHAAAYA+I+YQTAW+K +YP EF+AA+MT EM N +K+  F Q+  
Sbjct: 712  DKVAKFAEYGFNKSHAAAYALIAYQTAWLKANYPAEFMAATMTYEMSNTDKLNSFRQELD 771

Query: 811  QFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDS 864
            +  I+++PP +N     F V     G + + Y+LAA+K VG    + ++ E      F  
Sbjct: 772  RLGIKLLPPDINASQPTFSVEVLPDGGSAVRYALAALKNVGEAAMKSLVDERERGGRFKD 831

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            + DF +R+DSK LNRR LE++V AG  D    +R +L ++ D + +YA    ++R +   
Sbjct: 832  VGDFAARMDSKVLNRRQLENMVKAGVFDSLDKNRGRLFKNADTLCRYAASAAEDRDSSQM 891

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            ++     G+ +  + LE     +   +   E   +GFY S HPLD Y   ++++ +    
Sbjct: 892  SLLG---GSNAPTLKLESGPDWSPHEKLNQEFEAVGFYLSAHPLDAYAKSMKRLNVLKIA 948

Query: 985  ESVATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            E    ++      +RLA  ++SKQ++ + KGSR  ++ FS+ +  +E   F
Sbjct: 949  ELPRHLQSGGKGRVRLAGSLLSKQERVSAKGSRYAFLQFSDASGMFEVTCF 999


>gi|33861502|ref|NP_893063.1| DNA polymerase III subunit alpha [Prochlorococcus marinus subsp.
            pastoris str. CCMP1986]
 gi|33634079|emb|CAE19404.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus subsp.
            pastoris str. CCMP1986]
          Length = 1165

 Score = 1048 bits (2709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1048 (36%), Positives = 602/1048 (57%), Gaps = 36/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L  HS YSLL+GA  ++ I+D+       +IA+TD   ++  L+  +K  + GI+P
Sbjct: 2    GFVPLHNHSDYSLLDGASQVSKIVDRACELGMDSIALTDHGVMYGVLDLVKKCKSKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ I          + +  +     +V+L     GY+ L++L +  +L     +  
Sbjct: 62   IIGNEMYIINGSIDDPQPKKEKRY----HLVVLAKNHTGYKNLVKLTTISHLNGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I  S L++   +GLI+ T    G I +A       VAE   + +K++FGD  Y+ 
Sbjct: 118  FSRPCIDKSLLEKY-NDGLIISTACLGGEIPQAILKGRIDVAENTAVWYKRIFGDDFYLE 176

Query: 186  LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    +++++   H++ ++ATN++ ++S  D EAHD L+ V    ++S + 
Sbjct: 177  IQDHGSIEDRIVNVELIRIGKEHQIKVIATNDAHYISNMDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   Y+K+  EM+ +F+D      + EA+ NTVE++++           +P+F  K
Sbjct: 237  RLRYTGTEYIKSEDEMLRLFNDHIDKESIKEAINNTVEVSQKIEEFELFGTYRMPKFPLK 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E  D      + L      GL  RL +  +      + Y++RL  EL +I  M F  YFL
Sbjct: 297  EETD----SLSFLTKITKQGLLSRLNKNNLD--EIDEIYKKRLTSELKIIDDMGFPDYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A+ ++IPVGPGRGS AGS+ AYAL IT+IDP++  LLFERFLNP R SMPD 
Sbjct: 351  VVWDYIKFARDSSIPVGPGRGSAAGSLVAYALQITNIDPVKHGLLFERFLNPARKSMPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC DRR+EVI YV N+YG ++VAQIITF  + +KA L+DV R L +PY + D+L KL
Sbjct: 411  DTDFCIDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGESDKLAKL 470

Query: 479  IPNDPAHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L  + D       FR+  L D  V + ++++ ++EG  +    HAAG+VI
Sbjct: 471  IPVVRGKPYKLNEMIDKKSPSPEFRDKYLKDIKVKKWIDLALRIEGTNKTYGVHAAGVVI 530

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
               PL  LVP+ R+      +TQ++M  IE  GL+K DFLGLK LT++ K++  +    G
Sbjct: 531  ASDPLDMLVPLQRN-NEGQIITQYSMDDIESLGLLKMDFLGLKNLTMIDKTISLIESSTG 589

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             K+++  +P  D++T+ L+      G+FQLESSGM+Q ++  +P+ +EDI ++++LYRPG
Sbjct: 590  QKINIDKLPPKDNKTFDLIGRGDLEGVFQLESSGMKQVVKDFKPNSLEDISSILALYRPG 649

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRKNG EKI   HP I+ +L ET G+++YQEQ+M+IAQ L+GYSL +AD
Sbjct: 650  PLDAGLIPKFINRKNGSEKIDFPHPFIESILTETYGIMVYQEQIMKIAQDLAGYSLGDAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM K +  FI G+ K G+ K IA ++F+ +  FA+Y FNKSH+ AY  
Sbjct: 710  LLRRAMGKKKVSEMVKHRNIFIEGSCKKGVDKKIANDLFDQMVLFAEYCFNKSHSTAYGA 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K HYPV ++A+ +++   + +K++++  +     I+++ PS+N   +DF + 
Sbjct: 770  VTYQTAFLKAHYPVAYMASLLSVNAGSSDKMQRYISNCYSMGIEVISPSINLSGIDFTIK 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             ++I + L+AIK +G +  R+I++       F S  D C R+ S  LN+R LESL+  GA
Sbjct: 830  KDQILFGLSAIKNLGDSAIRNIIDNRNKLGVFKSFSDLCDRLPSNILNKRNLESLIHCGA 889

Query: 891  LDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFSV 945
            LD F    +R QL   L+ + ++A    ++R +   N+F       + + +L    K   
Sbjct: 890  LDEFSENNNRAQLFSDLEYVMEWASSRNRDRISGQGNLFDSISKNDTKEFSLSQGSKVED 949

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +   + + E+++LGFY S HPL       + +      +   +     + L  M+   +
Sbjct: 950  YSLIEKLKLEKQLLGFYLSDHPLKHLAKPAKLVSPISISQLENSHDRTKVSLVGMIPELK 1009

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q  TRKG R+  V   + +   EA  FP
Sbjct: 1010 QITTRKGDRMAIVQLEDLSGSCEAIVFP 1037


>gi|294101731|ref|YP_003553589.1| DNA polymerase III, alpha subunit [Aminobacterium colombiense DSM
            12261]
 gi|293616711|gb|ADE56865.1| DNA polymerase III, alpha subunit [Aminobacterium colombiense DSM
            12261]
          Length = 1144

 Score = 1047 bits (2708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1042 (37%), Positives = 619/1042 (59%), Gaps = 33/1042 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL VHS YSLL+GA+    + +++A+   PA+A+TD   ++ A+EF  +  A
Sbjct: 1    MTTRP-FVHLHVHSEYSLLDGAIRCGELAERVASWGMPAVALTDHGAMYGAIEFYDRCLA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+GC++ +D + +     +G+        ++LL    +GY  LI+LVS     D 
Sbjct: 60   AGIKPIVGCEVYVDPEGHTSREKKGRN-----FHLLLLAENQQGYNNLIKLVSIANT-DG 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
                 RI    L +  ++G+I  +   +G I           A  +   ++ +   D  +
Sbjct: 114  FYYRPRIDYDLLTQY-SQGIIASSACLAGEIPSLILQGKENDALAKAHMYRDIMGEDNFF 172

Query: 184  VNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +  +   ++   ++ +VQ+A  +   LVATN++ +L++EDY+ H++L+ V     ++ 
Sbjct: 173  LEIMYNAIPEQAVVNRSLVQMARKNNFNLVATNDAHYLNKEDYDWHEILLCVQTGATIND 232

Query: 243  KDRPRVTP-DHYLKNRSEMVSIF-SDLPEALENTVEIARRCS--FILQVHAPILPRFIEK 298
             DR   +  D YL++  EM S+F ++LP+AL+NT+ IA RCS  F L      LP F   
Sbjct: 233  PDRMSFSTNDFYLRSPEEMDSLFGAELPDALDNTLAIAERCSLKFDLGTRDYKLPSFDLP 292

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E + +    E+ L  +A+AGL+ RL +  +      ++Y++RLD+EL VI +M F+GYFL
Sbjct: 293  EGETL----ESNLEKEAMAGLKQRLHKDNV-----PEEYKKRLDYELKVIKKMGFAGYFL 343

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVA  I+ AK  +IP+GPGRGS AGS+ AY+L IT++DPL+++LLFERFLNP+R+SMPD 
Sbjct: 344  IVASIIRAAKDRDIPIGPGRGSAAGSLVAYSLRITELDPLKYNLLFERFLNPERVSMPDI 403

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D D     R+E+++Y+  KYG +RVAQIITF  +++KAA+RDVGRAL MPYS VD + KL
Sbjct: 404  DTDVSDKGREELLQYIAEKYGVDRVAQIITFDRMKSKAAIRDVGRALGMPYSDVDVVAKL 463

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP+        +A+      R     D +V RLL+ + K+EGL RH S HAAG+VI   P
Sbjct: 464  IPD--GARSIPEALDQSEDLRNLTHKDLAVSRLLDSASKIEGLARHCSQHAAGVVITPMP 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVD 597
            ++ LVP+ R +  +  VTQF M+ +EK GL+K DFLGLKTL++L+++++ +        D
Sbjct: 522  ITDLVPV-RRIGENQIVTQFPMEPLEKLGLVKMDFLGLKTLSVLEEAINNIKLNGKTPPD 580

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ IP +D+ TY +L    TLG+FQLES+GMRQ L  ++PDC ED+IA+++LYRPGP+ +
Sbjct: 581  LNKIPLNDNLTYEMLQRGNTLGVFQLESTGMRQLLRKIKPDCFEDLIAVLALYRPGPLGS 640

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  Y  RK+G+  +  +HP +  +LKET GVI+YQEQVMQ A  L+GYSL EAD+LRR
Sbjct: 641  GMVDQYIERKHGRAVVEYLHPELSEVLKETYGVILYQEQVMQSAACLAGYSLGEADLLRR 700

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  E M +Q++ F  G +++ +    A  IF+++ +FA YGFNKSH+AAYA+ISYQ
Sbjct: 701  AMGKKKVEVMQQQRKMFADGCAQHNVPARKAEEIFDIIQEFAGYGFNKSHSAAYALISYQ 760

Query: 776  TAWMKTHYPVEFLAASMTLEMD-NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            TA++K ++  EF+AA +T ++    + + ++ ++ R   I+++PP VN+    F   D  
Sbjct: 761  TAYLKANFQPEFMAAYLTSQIGSKKDVMARYIREVRNSGIEVLPPDVNSSMESFAAVDEV 820

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            + + L A+   G      I+ A      F SL +F  RVD + +N+ V+E+L+ AGA D 
Sbjct: 821  VRFGLGAVAKAGHGAVEAIIAARECGGEFSSLWNFLCRVDLRVVNKSVIENLIKAGAFDG 880

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTN-KHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
               +R QL+ +L +    AQ   + +      ++   +  +   +  L          R 
Sbjct: 881  LNSNRRQLISALPDFVALAQRKGEEKNQCSLLSLLDEDSESGDLEPELPDIEDYAIYERL 940

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRK 1011
            + E+ V+G Y SGHP   ++ ++ +               N   ++  M++S  +K T++
Sbjct: 941  DMEKEVVGLYISGHPFTQHETLVSRYSTCSISNLKYWRSRNLFPQIGGMILSVHEKYTKR 1000

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  +G +   +   + E   FP
Sbjct: 1001 GDPMGILEVEDAESKLEVICFP 1022


>gi|300312866|ref|YP_003776958.1| DNA polymerase III subunit alpha [Herbaspirillum seropedicae SmR1]
 gi|300075651|gb|ADJ65050.1| DNA polymerase III (alpha chain) protein [Herbaspirillum seropedicae
            SmR1]
          Length = 1152

 Score = 1047 bits (2708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1045 (39%), Positives = 605/1045 (57%), Gaps = 40/1045 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL++HS YS+++G + +++I+   A D Q A+A+TD  NLF  + F ++A   G+
Sbjct: 3    TPQFVHLRMHSEYSIVDGLVRIDDIVKAAAKDGQAALAVTDLANLFCMVRFYKEARGKGV 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI GC L I                     +++L+    GY +L E++S+ +L +Q K 
Sbjct: 63   KPIAGCDLWITN----------DADREKPFRLLVLIKNRHGYLQLCEVLSQAWLNNQYKG 112

Query: 128  SVRICLSWLQEI----GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
               + + WL  +    G  GLI L+G + G I +A    +   AE     + ++F    Y
Sbjct: 113  RAEVRMEWLDALRHQEGGNGLIALSGAAMGDIGQAIDNGNLAQAEACARRWAEIFPGAFY 172

Query: 184  VNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQR    +   +  Q V L     LP VAT+   F S E++ AH+    +A   +++ 
Sbjct: 173  LELQRAGQANMEVQVRQSVALGAKLGLPCVATHPIQFQSPEEFIAHEARTCIAEGEIMAN 232

Query: 243  KDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              R  R     Y K+++EMV +F+DLP A+ NTVEIA+RC+ +LQ+  P LP F   +  
Sbjct: 233  ARRVRRFNEQQYFKSQAEMVELFADLPGAVANTVEIAKRCNLVLQLGKPQLPDFPTPDGM 292

Query: 302  DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
             I    ++ L  +  AGLEVRL +       +      Y  RL+FE N I +MKF GYFL
Sbjct: 293  TI----DDFLVAQTKAGLEVRLKELFPNEAEREKQRPRYEARLEFENNTIIKMKFPGYFL 348

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFIQWAK N +PVGPGRGSGAGS+ AY L ITD+DPLR++LLFERFLNP+R+SMPDF
Sbjct: 349  IVADFIQWAKNNGVPVGPGRGSGAGSLVAYCLLITDLDPLRYNLLFERFLNPERVSMPDF 408

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFCQ+ RD VI+YV+++YG E V+QI TFG++ AK A+RDVGR L + Y+  D + KL
Sbjct: 409  DIDFCQEGRDRVIQYVKDRYGKEAVSQIATFGTMAAKGAVRDVGRVLDLGYNFCDGISKL 468

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP  P   V+L  AI ++   +E    +  V +L+ ++Q++EG+ R+   HA G++I   
Sbjct: 469  IPFKPGKLVTLADAIEEEPLLKERLENEEEVKQLMGLAQQVEGIARNIGMHAGGVLIAPG 528

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
             L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L +++ ++      + 
Sbjct: 529  KLTDFCPLYTQGGDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIRMLDPAMA 588

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              DL+ +P DD  +Y LLT   T+ +FQLES GM+  L+  +PD  EDIIALV+LYRPGP
Sbjct: 589  DFDLAKLPLDDRPSYELLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGP 648

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RK+G E      P  + +L ET G+++YQEQVMQ+AQ++ GYSL  AD+LR
Sbjct: 649  MDLIPDFCKRKHG-EAFDYPDPRTEGILSETYGIMVYQEQVMQMAQVIGGYSLGGADLLR 707

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM K +E F  GA+KNG+ +  A  IF+L+ KFA YGFNKSHAAAYA++SY
Sbjct: 708  RAMGKKKAEEMAKHRELFREGAAKNGLDQAKADEIFDLMEKFAGYGFNKSHAAAYALLSY 767

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDN 833
             TA++K H+P  F+AA+++L M++ +K+K   +DA     + I+PP +N     F     
Sbjct: 768  YTAYLKAHHPAAFMAANLSLAMEDTDKVKILIEDAIDICKLAILPPDINKSDYRFMPVGE 827

Query: 834  ------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                  +I Y L A+KG G      I+EA    PF  L DF  RVD K++NRR ++SL+ 
Sbjct: 828  PGKKATQIRYGLGAVKGAGQNAIEAILEARKSGPFKDLFDFAKRVDKKQINRRTIDSLIR 887

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGA DCF   R  L  S++   + A+  EK+      ++F  +       +   +    +
Sbjct: 888  AGAFDCFKVDRAVLQASVNLAWESAEQAEKSAN--QVSLFGGDDSDLEAPLEYVQVPPWS 945

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
               R   E+  LGFY SGH    Y+  +R+           +    +  LA ++   + +
Sbjct: 946  DKQRLTEEKGALGFYLSGHLFSAYEKEVRRFVRTKIASLEPSWEPRS--LAGIITGVRVQ 1003

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G  +   T  +     EA  +
Sbjct: 1004 MTQRGKLV-ICTLDDGTGVIEATIY 1027


>gi|296269404|ref|YP_003652036.1| DNA polymerase III subunit alpha [Thermobispora bispora DSM 43833]
 gi|296092191|gb|ADG88143.1| DNA polymerase III, alpha subunit [Thermobispora bispora DSM 43833]
          Length = 1174

 Score = 1047 bits (2708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1060 (34%), Positives = 550/1060 (51%), Gaps = 47/1060 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA  L  +   +     PAIAITD  NL  + +F ++A AAGI+P
Sbjct: 4    SFVHLHVHTEYSMLDGAARLKQMFKLVGELGMPAIAITDHGNLHGSYDFYKQATAAGIKP 63

Query: 70   IIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  +  +                    +       + +      G   LI+L SR 
Sbjct: 64   IIGIEAYVAPESRFNKQPVLWGEPHQRGDDVSAGGFYTHLTIWARNKTGLHNLIKLSSRA 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF- 178
            Y     ++  R+    L E   EGL+  TG  SG +           A K    ++++F 
Sbjct: 124  YTEGFVRKWARMDAELLAE-HAEGLMASTGCPSGEVQTRLRLGQYDEALKAAAKYQEIFG 182

Query: 179  GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +  Y+ L  H    +R     +V++  T  LP V TN+S +  + D   HD L+ +   
Sbjct: 183  KENFYLELMDHGLDIERRVRDDLVRIGRTLGLPPVVTNDSHYTYQSDAAGHDALLCIQTG 242

Query: 238  TVVSQKDRPRVTP-DHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFI-LQVHAPILP 293
              ++  DR R    ++Y+K   EM ++ S     E   NT+ IA +        +  ++P
Sbjct: 243  KQLNDPDRFRFEGTEYYIKTPEEMRALDSSDLWQEGCRNTLAIAEKVDPTGFFEYKNLMP 302

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             F   E     K EE   R K   G+  R   G         ++R+ ++ E++VI +M F
Sbjct: 303  TFPIPEG----KTEEEYFREKVWEGMRRRFPDGVD------DEHRELVEKEISVIVQMGF 352

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DP+   L+FERFLNP+R+
Sbjct: 353  PSYFLVVADFIMWAKNNGIRVGPGRGSAAGSLVAYALGITDLDPIPHGLIFERFLNPERV 412

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD D+DF + RR +VIRYV  K+G ++VA I TFG+++AKAA++D  R L  PY+  D
Sbjct: 413  SMPDIDVDFDERRRADVIRYVTEKWGADKVAMIATFGTIKAKAAIKDAARVLGYPYALGD 472

Query: 474  RLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRH 524
            R+ K  P       + L  I D            R+    DP V   +++ + LEGL R 
Sbjct: 473  RITKAFPPAVMGKDIPLSGIFDPEHPRYHEAGELRKMYEEDPDVKAAIDLGRGLEGLIRQ 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HAAG+++   PL+  +P+ R       +TQF+    E  GL+K DFLGL+ LT++  
Sbjct: 533  TGVHAAGVIMSSEPLTDHIPIMRRDSDGAIITQFDYPTCEALGLLKMDFLGLRNLTIIDD 592

Query: 585  SLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
             L  + A  G K+DL  +P DD +TY LL    TLGIFQL+  GMR  L  M+PD  EDI
Sbjct: 593  CLKMIEANTGEKIDLLELPLDDAKTYELLARGDTLGIFQLDGGGMRSLLRLMKPDNFEDI 652

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVMQ 697
             A ++LYRPGP+  ++ + Y  RKNG+++I  IHP ++     +L  T G+I+YQEQVM 
Sbjct: 653  SAALALYRPGPMGANSHINYALRKNGQQEITPIHPELEEPLKDILSTTYGLIVYQEQVMA 712

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ ++ Y+L  AD+LRRAMGKK KEE+D+Q E F  G  +NG S      ++++L  F+
Sbjct: 713  IAQKVANYTLGGADLLRRAMGKKKKEELDRQFEFFEKGMKENGFSDEAIRALWDILVPFS 772

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            DY FNK+H AAY ++SY TA++K +YP E++AA +T   D+ +K   +  + R+  I+++
Sbjct: 773  DYAFNKAHTAAYGLVSYWTAYLKANYPAEYMAALLTSVKDDKDKSALYLNECRRMGIKVL 832

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876
            PP VN    DF      I + L+A++ VG      I++A  +   F    DF  +V ++ 
Sbjct: 833  PPDVNDSDFDFTPRGGDIRFGLSAVRNVGANVVDGIIKARKEKGRFTDFADFLRKVPAQV 892

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             N+RV+ESL+ AGA D  G+ R  L    +        ++KN     +++F   +G    
Sbjct: 893  CNKRVIESLIKAGAFDSLGHERKGLFMIHEQAVDAVIDIKKNEAIGQDSLFGAVEGAEDT 952

Query: 937  KITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT--IRGN 993
               ++      +     + E+ +LG Y S HPL   + IL                  G 
Sbjct: 953  TFDVQVPPGEWDKRTLLQFEREMLGLYVSDHPLLGVEHILAAGSDCSIAALQDESHPDGQ 1012

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + +  ++   Q+K T+KG      T  +     E   FP
Sbjct: 1013 VVTVGGILSGLQRKITKKGDTWVLATLEDLEGSIEVMIFP 1052


>gi|326791665|ref|YP_004309486.1| DNA polymerase III subunit alpha [Clostridium lentocellum DSM 5427]
 gi|326542429|gb|ADZ84288.1| DNA polymerase III, alpha subunit [Clostridium lentocellum DSM 5427]
          Length = 1155

 Score = 1047 bits (2707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1048 (37%), Positives = 588/1048 (56%), Gaps = 44/1048 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +N++LD++      ++AITD   +F A++F + A    I P
Sbjct: 4    NFTHLHVHTEYSLLDGSAKINDLLDRVKELGMDSVAITDHGVMFGAIDFYKAAKQRDINP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +            +     +VLL    +GYQ LI++VS  ++     +  
Sbjct: 64   IIGCEVYLAARTRFDKEPVDARSY----HLVLLAENNKGYQNLIKMVSSGFIEG-FYRRP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI +  L+E   EGLI L    +GP+ R    ++ + A+   LT +++      ++ +Q 
Sbjct: 119  RIDIELLRE-HHEGLIALGACLAGPVSRRLLNDNYEEAKAAALTLEEIMGKGNFFLEIQD 177

Query: 189  HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+ + +Q+ ++LA    +P+VATN+  ++ +ED   H+VL+ +     +  +DR  
Sbjct: 178  HGIKDQQKVNQLTLRLAEETGIPIVATNDVHYIKDEDANPHEVLLCIQTGKTMEDEDRMV 237

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  YLK+ SEM  +F    EALENT +IA+RC      H   LP+F   E     K 
Sbjct: 238  YEGGQFYLKSPSEMAMLFPYAEEALENTNKIAQRCHVDFTFHELKLPKFDVPEG----KT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E  LR +   GL+ R            +           +I +M F  YFLIV DFI++
Sbjct: 294  AETFLRERCYEGLKKRYETITPELEERLEYEL-------GIIIQMGFVDYFLIVGDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK ++IPVGPGRGS AGS+ AY L IT+IDP+++ LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 347  AKDHDIPVGPGRGSAAGSIVAYTLEITNIDPIKYQLLFERFLNPERVSMPDIDIDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RVAQI+TFG+L A+A +RDVGRA+ MPY+ VD++ K+IPN+    
Sbjct: 407  RQEVIEYVIRKYGADRVAQIVTFGTLAARAVIRDVGRAINMPYADVDKVAKMIPNELKIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   RE    +  +  LL+ S KLEGL RH+S HAAG+VI ++P+ + VP+ 
Sbjct: 467  IK-KALNMNDELRELYNTNEQIKYLLDTSMKLEGLPRHSSMHAAGVVISNKPVVEYVPL- 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
             +    +  TQ+ M  +E+ GL+K DFLGL+TLT++  ++  + +   + +D+  I   D
Sbjct: 525  -NASEGVVTTQYPMTTLEELGLLKMDFLGLRTLTVIDNAVKLVKKNHDIDIDIEKIDDHD 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             + Y L+ +  T GIFQLES+GM+  ++ + P C+EDIIA VSLYRPGP+D I  Y   K
Sbjct: 584  PKVYELIASGNTEGIFQLESAGMKNFMKELAPTCLEDIIAGVSLYRPGPMDFIPKYVQGK 643

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
                 I   HP ++P+L+ T G I+YQEQVMQI + L+GYSL  +D+LRRAMGKK  + M
Sbjct: 644  RDANSITYTHPALEPILENTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMGKKKIDVM 703

Query: 726  DKQKERF-------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +K++E F       + G  KN I   I   IF+ +  FA Y FNKSHAAAYAV++YQTA+
Sbjct: 704  NKEREIFLYGDGDSVPGCVKNNIPAEIGNKIFDEMVDFAKYAFNKSHAAAYAVVAYQTAY 763

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +KT+Y VEF+AA MT  MD   KI  + +  ++  I+++ P +N     F    ++I Y 
Sbjct: 764  LKTYYKVEFMAALMTSVMDVTTKITGYMETCKRMGIEVLSPDINEGHAYFDANGDKIIYG 823

Query: 839  LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            LAAIK VG      I+E    +  F SL DF +R++SK  N+R +ESL+ AGA D  G  
Sbjct: 824  LAAIKNVGKNVIDRIVEERQRNGRFKSLTDFYNRMESKDTNKRSIESLILAGAFDHLGGR 883

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R Q +     I        KN      ++F    +    DK  L      +S      E+
Sbjct: 884  RSQYMAVYKQIANGINLNRKNNIQGQIDLFGLGSEEVVEDKDHLPDIPEFDSKELLNYEK 943

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-----------TIRGNNIRLAAMVVSKQ 1005
             V+G Y SGHPLD  +  L +      ++                 G  + +  +++ K+
Sbjct: 944  EVMGIYLSGHPLDKVRGSLERYITLTSDQLAPPSEEEETEEEQIYDGKRVVVGGILIEKK 1003

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               T++  ++ ++T  +     E   FP
Sbjct: 1004 VIFTKQNKKMAFLTLEDTRGVMEIVVFP 1031


>gi|33596339|ref|NP_883982.1| DNA polymerase III subunit alpha [Bordetella parapertussis 12822]
 gi|33602375|ref|NP_889935.1| DNA polymerase III subunit alpha [Bordetella bronchiseptica RB50]
 gi|33566108|emb|CAE37008.1| DNA polymerase III alpha subunit [Bordetella parapertussis]
 gi|33576814|emb|CAE33893.1| DNA polymerase III alpha subunit [Bordetella bronchiseptica RB50]
          Length = 1163

 Score = 1046 bits (2706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/1055 (37%), Positives = 606/1055 (57%), Gaps = 45/1055 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +++ +   P FVHL+VHS +S+ +G + +++++ ++A   QPA+A+TD +N+F  ++F +
Sbjct: 1    MSEAVTNPPPFVHLRVHSEFSVSDGIVRISDLIKRVAKLGQPAVALTDLSNIFGLIKFYK 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AG++P+ G  + +   D+ +              ++LLV   +GY  L EL++R +
Sbjct: 61   GARGAGVKPVAGSDVWLTNDDDREK----------PFRLLLLVRNHQGYLNLCELLTRSF 110

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L +Q K    +   WLQ  G EGLI+L+G   G + +A    ++  A      + +LF  
Sbjct: 111  LENQYKGRAEVRREWLQ--GQEGLIVLSGARGGDVGQALEAGNAVTALSLARQWGQLFPG 168

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR     D       ++LA    LP+VAT+   FL  ++++AH+  + +A   +
Sbjct: 169  SYYIELQRAGFDGDETYTQAAMRLAAEAGLPVVATHPVQFLDRDEFQAHEARVCIAEGEI 228

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R T D YL +  EM   F+D+P AL NTVEIARRC+  L +  P LP F   
Sbjct: 229  LANPRRVRRYTQDQYLLSSEEMARRFADVPSALANTVEIARRCNLTLVLGKPRLPNFPTP 288

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L   +  GLE RL         +      Y +RL +E   I +M F G
Sbjct: 289  DGVTL----DDYLVQLSEEGLEKRLQFLFPDEAERNAKRDQYYERLRWECKTIIQMGFPG 344

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SM
Sbjct: 345  YFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSM 404

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQD R+ VI YV+ KYG E V+QI TFG+L AKA +RD GR L MPY   D L
Sbjct: 405  PDFDIDFCQDNRERVIDYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMPYLFCDAL 464

Query: 476  CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP +PA P +L+  + D+  F++    +  V  L+++++ LEGL R    HA G++I
Sbjct: 465  SKLIPFNPADPWTLERTLKDEPAFKDRYEQEEEVRALVDLARPLEGLTRSIGMHAGGVLI 524

Query: 535  GDRPLSQLVPMYRDVR-SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-- 591
                L+   P+Y      +  V+QF+   +E AGL+KFDFLGL+ LT+L  ++ F+ Q  
Sbjct: 525  APGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRFVRQFN 584

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  D+  +  DD   Y +L    T  +FQLES GM++ L+ ++P   EDIIA+++LY
Sbjct: 585  ADKRDFDVMALSLDDQAAYKVLCDANTTAVFQLESRGMKELLKKLRPSTFEDIIAMLALY 644

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+++ +V  + NRK+G+  +   HP ++  L+ T GVI+YQEQVM I+Q++ GYSL 
Sbjct: 645  RPGPLESGMVDDFVNRKHGRAAVDYFHPDLEGTLRSTYGVIVYQEQVMLISQIIGGYSLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM K +E F  GA + G    +AV +F+L+ KFA YGFNKSH+AA
Sbjct: 705  GADLLRRAMGKKKPEEMAKHRELFEQGAREKGHDPDLAVKLFDLMEKFAGYGFNKSHSAA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+I+YQTAW+K ++P EFLAA+++ +MD+ +K++ F +DA+   ++++PP VN     F
Sbjct: 765  YALIAYQTAWLKAYHPTEFLAATLSSDMDDTDKVQIFVRDAQDNGVEVLPPDVNASGYRF 824

Query: 829  KVGDNR----------IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKL 877
            +   ++          + Y L A+KG G      I+ A  +  PF +L DFC RV    +
Sbjct: 825  EPVADKHTEQGKPPRTMRYGLGAVKGTGQGAVEEILRARQEGGPFANLFDFCRRVSKHAV 884

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR +E+L+ AGA D    +R  +L S+    + A+     R+    ++F  + G     
Sbjct: 885  NRRTIEALIKAGAFDTIEPNRAAMLASVGTAMEAAEQA--ARSANQSSLFGDDSGDVVAG 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
              L K +  N       E+  LG+YFSGH  D ++  +R++                  +
Sbjct: 943  -ELTKVAPWNLHTTLTEEKTALGYYFSGHLFDAWRDEVRRIVPMQLARLEPQRDLQW--M 999

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++   +   TR+G  + +    +   + E + F
Sbjct: 1000 CGVLAGVRTMMTRRGK-MVFAVLDDGTAQIEISVF 1033


>gi|269127115|ref|YP_003300485.1| DNA polymerase III subunit alpha [Thermomonospora curvata DSM 43183]
 gi|268312073|gb|ACY98447.1| DNA polymerase III, alpha subunit [Thermomonospora curvata DSM 43183]
          Length = 1177

 Score = 1046 bits (2705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1066 (34%), Positives = 571/1066 (53%), Gaps = 51/1066 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL VH+ YS+L+GA  LN +  ++   + PAIA+TD  N+  A +F + A  AG+
Sbjct: 2    ADSFVHLHVHTEYSMLDGAARLNQLFAEVERQKMPAIAMTDHGNMHGAYDFWKHAKDAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMT----------NQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
             PIIG +  +  +                    +    +  + L      G   L +L S
Sbjct: 62   TPIIGIEAYMAPESRFHKKKVQWGEPSQKRDDVSGGGLINHMTLWARNKTGLHNLFKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            R Y      +  R+    L E  +EG++  TG  SG I           A K   TF+++
Sbjct: 122  RAYTEGFVFKYARMDEELLAE-HSEGVMATTGCPSGKIQTRLRLGQFDEALKAAATFQEI 180

Query: 178  F-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  +  ++ L  H    +R     ++++     +P V TN+S +  E +  AHD L+ V 
Sbjct: 181  FGKENYFLELMDHGLEIERRVRDGLLEIGKKLGIPPVVTNDSHYTHESEAAAHDALLCVQ 240

Query: 236  HSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFI-LQVHAPI 291
                +S  DR R     +YLK+  EM S+ S     E   NT+ IA R        H  +
Sbjct: 241  VGKQLSDPDRFRFDGTGYYLKSAEEMRSLDSSEVWAEGCRNTLLIAERVDPTGFFEHRNL 300

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +PRF   E +     E +  R + + G++ R   G      + + +R+++++E+++I +M
Sbjct: 301  MPRFPVPEGE----TEASWFRKEVMRGMDRRFPNG------YDEAHRRQVEYEIDIITQM 350

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DPL+  L+FERFLNP+
Sbjct: 351  GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSLAAYALGITDLDPLQHGLIFERFLNPE 410

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD D+DF + RR +VIRYV  K+G ++VA I TFG+++AKAA++D GR L  PY+ 
Sbjct: 411  RVSMPDIDVDFDERRRGDVIRYVTEKWGADKVAMIATFGTIKAKAAVKDAGRVLGFPYAM 470

Query: 472  VDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K  P       + L AI D++          R+    +  V ++L+++Q LEGL 
Sbjct: 471  GDRISKAFPPAVMGKEIPLSAIFDENHPRYGEAGELRKMYEEEADVKQILDLAQGLEGLI 530

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   PL+  +P+ R       +TQF+    E  GL+K DFLGL+ LT++
Sbjct: 531  RQWGVHAAGVIMSSEPLTDHIPIMRRDSDGAIITQFDYPTCETLGLLKMDFLGLRNLTIM 590

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              +L  +   +GV++DL  +P DD +T+ LL    TLG+FQL+   MR  L  M+PD  E
Sbjct: 591  DDALKAIKANKGVEIDLLKLPLDDKKTFELLARGDTLGVFQLDGGPMRALLRLMKPDNFE 650

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQV 695
            DI A+++LYRPGP+  ++   Y  RKNG+++I  IHP ++     +L  T G+I+YQEQV
Sbjct: 651  DISAVLALYRPGPMGANSHTNYALRKNGQQEITPIHPELEEPLKDILDTTYGLIVYQEQV 710

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M IAQ ++GY+L  AD+LRRAMGKK K E+DKQ E F  G  +NG S      ++++L  
Sbjct: 711  MAIAQRVAGYTLGGADLLRRAMGKKKKAELDKQFEFFEKGMRENGYSDEAIKALWDILLP 770

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            F+DY FNK+H A Y ++SY TA++K +YP E++AA +T   D+ +K   +  + R+  + 
Sbjct: 771  FSDYAFNKAHTAGYGLVSYWTAYLKANYPAEYMAALLTSVKDDKDKSALYLNECRRMGVT 830

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873
            ++PP VN    DF   GD  + + L+AI+ VG      I+ A  +   F    DF ++V 
Sbjct: 831  VLPPDVNESDADFTPKGDAEVRFGLSAIRNVGENVVEAIIAARREKGAFTDFNDFLNKVP 890

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            S+  N+RV+ESL+ AGA D  G+ R  LL   +        +++      +++F    G 
Sbjct: 891  SQVCNKRVVESLIKAGAFDSLGHRRRALLTVHEQAIDSVIDIKRKEAIGQDSLFGALDGG 950

Query: 934  FSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--- 987
                   +T+      + + +   E+ +LG Y S HPL   + IL K             
Sbjct: 951  EDTTAFSVTIPDEEEWDKTTKLSFEREMLGLYVSDHPLLGVEHILAKEADTSIAALTGES 1010

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                G  + +A ++ + Q+K T++G+        +     E   FP
Sbjct: 1011 DRPDGQVVTVAGLLSNLQRKVTKQGNSWAMFQLEDLGGSIEVMCFP 1056


>gi|254513858|ref|ZP_05125919.1| putative DNA polymerase IIIalpha subunit subfamily [gamma
            proteobacterium NOR5-3]
 gi|219676101|gb|EED32466.1| putative DNA polymerase IIIalpha subunit subfamily [gamma
            proteobacterium NOR5-3]
          Length = 1168

 Score = 1046 bits (2704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1044 (39%), Positives = 606/1044 (58%), Gaps = 42/1044 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS YSL +G + + ++  ++A  + PA+A+TD  N +  ++F + A +AG++PI
Sbjct: 4    FVHLRVHSEYSLKDGLVRIKSLAARVAELEMPAVAVTDVCNFYGLIKFHKAAVSAGVKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  + +                     + LLV   EGY  L  L+SR Y   Q     R
Sbjct: 64   FGADVWVT----------DSLKSDDAYPLCLLVMNPEGYLNLTRLLSRAYREGQTLDGPR 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   WL E G EGL+ L+ G++G + +A       +A +R+     +F  R Y+ L R  
Sbjct: 114  VLWEWLSEAG-EGLLALSCGAAGEVGQALVNEKMDLARQRMERCLAVFPGRFYLELHRTG 172

Query: 191  GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
               D       + LA     P+VATN+  F+   ++EAH+  + +A S V+    R  R 
Sbjct: 173  RVGDEEHVHAALDLATQFNCPVVATNDVRFIDASEFEAHEARVCIAESRVLDDPRRQRRY 232

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            + + YL++  EM  +F D+PEALENT+ IARRCS  +++    LP +   +   +    +
Sbjct: 233  SQEQYLRSSEEMQELFEDIPEALENTLAIARRCSMEMELGRVCLPEYPVPDGMTM----D 288

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFLIVADFI 364
               R  A  GL+ RL    I +  +AQ    +YR+RLDFEL+ I  M F GYFLIV DFI
Sbjct: 289  TFFRESAHRGLDERLQTLQIHRRENAQALEREYRERLDFELDTIIAMGFPGYFLIVMDFI 348

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK++ IPVGPGRGSGAGS+ AY+L+ITD+DP+ + LLFERFLNP+R+SMPDFD+DFC 
Sbjct: 349  RWAKEHGIPVGPGRGSGAGSLVAYSLSITDLDPIEYELLFERFLNPERVSMPDFDVDFCM 408

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDEVI YV + YG E V+QIITFG+L AKA +RDV R     Y   DRL K+IP +  
Sbjct: 409  ERRDEVIDYVADLYGREAVSQIITFGTLAAKAVVRDVARVQGKSYGLGDRLSKMIPFEVG 468

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +AI  +   ++    D     + +++ +LEG+ R+   HA G+VI    L+    
Sbjct: 469  MTLQ-KAIEQEESLQQFLRDDGEAQEIWDMAVQLEGITRNVGKHAGGVVIAPSELTDFSA 527

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDLS 599
            +Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +   +      Q    +D++
Sbjct: 528  LYCDGEGAGLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWAQGMINEIRARQDEPPLDIN 587

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DDH ++ LL +  T  +FQLES GM++ +  ++PDC EDIIALV+LYRPGP+ + +
Sbjct: 588  QIPLDDHASFELLRSAETTAVFQLESRGMKELIARLRPDCFEDIIALVALYRPGPLQSGM 647

Query: 660  --VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
               + +RK+G+EK+        H L+ P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+
Sbjct: 648  VDNFIDRKHGREKVSYPDAEYQHELLKPVLEPTYGIILYQEQVMQIAQILAGYTLGGADL 707

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  EEM KQ+  F +GA+  G+   +A  +F+L+ KFA YGFNKSH+AAYA++
Sbjct: 708  LRRAMGKKKPEEMAKQRSVFAAGAAAKGVDADLATKLFDLVEKFAGYGFNKSHSAAYALV 767

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-G 831
            SYQTAW+K+HYP  F+AA M+ E+DN +KI  F ++ R+  + +  P VN     F V  
Sbjct: 768  SYQTAWLKSHYPAAFMAAVMSSELDNTDKIVVFIEECRRMGLTVRLPDVNEGRYMFTVSE 827

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I Y L AIKG+G      ++E+  +  PF  L DFC+R D +KLNR+ LE+LV +GA
Sbjct: 828  AGEIVYGLGAIKGLGEGPVSGLLESREEHGPFHDLFDFCARTDPRKLNRKALEALVRSGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH----EKGTFSDKITLEKFSVE 946
             D  G  R  LL  +D+  + A+    NR     ++F       +        L      
Sbjct: 888  FDSLGTDRWILLAGIDDALRAAEQNAANRDAGMVDLFGETVQASREQGDPYAELRHIRPW 947

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                R + E+  LG Y +GHP+D  +  +R+   +   +     RGN  R+A +++S + 
Sbjct: 948  TDRERLQGERDTLGLYVTGHPIDSCEDEIRRFVPQRLADLRPDNRGN-CRVAGLILSMRA 1006

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEAN 1030
             K+ +GS +      + +   EA 
Sbjct: 1007 MKSARGS-MAVFVLDDRSARLEAT 1029


>gi|167585898|ref|ZP_02378286.1| DNA polymerase III, alpha subunit [Burkholderia ubonensis Bu]
          Length = 1104

 Score = 1046 bits (2704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1042 (39%), Positives = 605/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F ++A   G
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWIANPDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL     +GL+ L+G   G I  A    + + A +    + K+F    Y+ L
Sbjct: 112  GRAELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q   LA   +LP+VAT+ + F++++D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAATLAAELKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T D Y + + +M ++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 232  QKRFTTDQYFRTQDDMAALFADLPSAVANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RL         +      Y +RL+FE   I +M F GYFLIVA
Sbjct: 291  ---DDYLIQLSKEGLEKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDAASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM + +E F +GA+KNG+S+  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAEHREIFAAGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 828  RSRTIRYGLGAVKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+    + A   E N       +F            L      +   
Sbjct: 888  FDSLNANRAQLLASVPLAMEAADQAEANAM--QAGLF-DMGAESPHAHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKVGEL---KEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MLIALLDDGTGQCEITIF 1022


>gi|206560768|ref|YP_002231533.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia J2315]
 gi|198036810|emb|CAR52710.1| putative DNA polymerase III alpha subunit [Burkholderia cenocepacia
            J2315]
          Length = 1177

 Score = 1046 bits (2704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1042 (39%), Positives = 606/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + +++I+   AAD Q A+A+TD  N F  + F Q+A   G
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWIANPDD----------RDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL     +GL+ L+G   G I  A    + + A +    + ++F    Y+ L
Sbjct: 112  GRAELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T D Y + + +M ++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 232  QKRFTTDQYFRTQDDMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRLAQGAI---AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RLAQ       +      Y +RL+FE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSKEGLETRLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L A+KG G      I+ A  +K F  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 828  RSRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QL+ S+    + A   E N       +F            L      +   
Sbjct: 888  FDSLNPNRAQLIASVPLAMEAADQAEANAM--QAGLF-DMGAESPHAHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   +      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKVGDL---KEGRDKLVAGIIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MLIALLDDGTGQCEITIF 1022


>gi|171913486|ref|ZP_02928956.1| DNA polymerase III, alpha subunit [Verrucomicrobium spinosum DSM
            4136]
          Length = 1155

 Score = 1046 bits (2704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1043 (38%), Positives = 599/1043 (57%), Gaps = 35/1043 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL +H+ YS+L+GA+ + +++ K  +   PA+A+TD  NLF A+EF Q+A  AGI
Sbjct: 2    SASFVHLHLHTEYSMLDGAVRIPDLMKKAKSLGMPAVAMTDHGNLFGAIEFYQEANKAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC++ +          +  T       + LL +  EGY  L++LV+  +L D    
Sbjct: 62   KPIIGCEIYLAPGS--MWEKKDVTGRKRSSHLTLLAANNEGYANLVKLVTLAHL-DGMYH 118

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
              R+    L++  +EGLI L+G  SG I+     +    A K +  F  +F  D  Y+ L
Sbjct: 119  KPRVDKEALKK-HSEGLICLSGCISGEINEFILTDREDEARKTVQEFIDIFGKDNFYLEL 177

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H    + R   ++ + +    L +VA N+  FL++ED+EAHDV++ +  +  V  + R
Sbjct: 178  HNHGMAQQQRCMLKLREFSREFGLKMVAANDVHFLNKEDHEAHDVMICIGTAANVHDEKR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA---PILPRFIEKECDD 302
               +P+ Y K   +M  +F D  EA + T+EIA +C+  L++ A      P+F   E   
Sbjct: 238  LHYSPEVYFKTAEQMRELFEDFEEACDTTLEIAEKCNIKLKLDASSIEKYPQFPPPEG-- 295

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +  E   R     G+  R       +  +    R+RLD+EL +I +M F+ YFLIV D
Sbjct: 296  --QTREGYFRQLCEDGMIFRY---GKERAMNDAMLRERLDYELGIINKMNFTSYFLIVWD 350

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WA+ + IPVGPGRGS AGS+ AY+L ITD+ P+RF L+FERFLNP+R+S PD DIDF
Sbjct: 351  FIKWARDHGIPVGPGRGSAAGSLVAYSLGITDLCPIRFGLIFERFLNPERVSPPDVDIDF 410

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ RR EVI YV+  YG   V+ IITFG++ AK+ +RDVGR L   Y   DRL K+IP +
Sbjct: 411  CQTRRPEVIEYVRQHYGERSVSHIITFGTMGAKSVVRDVGRVLGWSYGDADRLSKMIPTE 470

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +   A+  +   + A   + S  +L + +  LEG+ R+A  HAAGIVIGD+PL   
Sbjct: 471  LNIDLE-SAVEKNPELKAALENESSTQQLWQYATFLEGMTRNAGIHAAGIVIGDQPLDNF 529

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            +P+ R    ++ V QF M  +   G++K DFLGLKTLT+++ ++DF+  R    +L  +P
Sbjct: 530  IPLTRGSEGEV-VAQFAMGPLTDVGMLKMDFLGLKTLTVIKDAVDFVRLRFPDFNLDAVP 588

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  TY +L    T+ +FQ+ES GM      ++PD IE+IIAL++LYRPGP+D I  + 
Sbjct: 589  LDDKTTYEMLRKGETIAVFQMESGGMALTCRQLEPDKIEEIIALLALYRPGPMDLIPDFI 648

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G++++  +HPL++ + KET G++IYQEQV + A LL+GYSL  AD+LRRAMGKK  
Sbjct: 649  KRKKGEQRVEYLHPLLEDVSKETYGILIYQEQVQKAANLLAGYSLGAADLLRRAMGKKKP 708

Query: 723  EEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            EEM+KQ+  F+ G  + N I    A +IF+LL KFA YGFNKSH+AAY +++Y+TA++K 
Sbjct: 709  EEMEKQRTIFVKGCGETNQIPAKKANDIFDLLEKFAGYGFNKSHSAAYGIVTYRTAYLKA 768

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-------NR 834
            +YPVEF+AA ++ E+++ +K+  F  + ++  I I+PP VN   + F           N 
Sbjct: 769  NYPVEFMAAVLSYEVNSTDKLAGFVSECQRMGITILPPDVNKSSLKFAPECIEGSDVPNA 828

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y LAA+K VG       +     + PF SLEDFC+RVDS+ +N+R++E L+  G  D 
Sbjct: 829  IRYGLAAVKNVGEAAMAAAIAERTKNGPFTSLEDFCARVDSRMINKRLMEPLIKVGGFDW 888

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSV 950
             G  R  +   LD +   A   +K R     ++F  +    + K TL K           
Sbjct: 889  TGQDRAGMCFVLDEVLSNASSRQKERKAGMVSLFDDDT-MGATKNTLAKSAGPPPWKKEE 947

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKT 1009
                E+ +LGF+ SGHPLD Y+ I     I    +         ++R+A ++   + K T
Sbjct: 948  LMAFEKELLGFFVSGHPLDNYRHIYESKYITRIADVQEVKEERVSLRVAGLIQRLEVKYT 1007

Query: 1010 RKGSRIGWVT--FSEPAKEYEAN 1030
            +K +R  + T    + +   E  
Sbjct: 1008 KKDNR-AFATFALEDFSGTVEVI 1029


>gi|254282070|ref|ZP_04957038.1| DNA polymerase III, alpha subunit subfamily, putative [gamma
            proteobacterium NOR51-B]
 gi|219678273|gb|EED34622.1| DNA polymerase III, alpha subunit subfamily, putative [gamma
            proteobacterium NOR51-B]
          Length = 1142

 Score = 1046 bits (2704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/1034 (38%), Positives = 600/1034 (58%), Gaps = 41/1034 (3%)

Query: 17   HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
            H+ YSL++G + +  ++  +AA + PA+AITD  N +  ++  + A +AGI+ I+G    
Sbjct: 2    HTEYSLVDGLVKIKPLMSALAAAKMPAVAITDLTNFYGLIKAYKAAASAGIKLIVGADFW 61

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            +   D+               S+ LL     GYQ L  L++R +   Q      +  +WL
Sbjct: 62   VVDPDDP----------DRHHSLCLLAQDETGYQNLTTLITRAWRDGQHHGRASVQRAWL 111

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRY 195
             +   EGLI L+GG  G + +       + A + L+ +++ F DR Y+ LQR  R  +  
Sbjct: 112  GD-HAEGLIALSGGRLGHVGQLLLLQHPEEARQALIDYQRDFPDRFYIELQRTGRPGEED 170

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYL 254
                 V LA   + P+VATN+  FL+  ++EAH+  + +     +    RPR  +   +L
Sbjct: 171  YIHAAVALAAELDCPVVATNDVRFLTPSEFEAHEARVCIGEGRTLDDPRRPRDYSEKQFL 230

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
            ++  EM ++FSD+PEA+ENTVEIARRCS  +++  P LP F   E    +   E+ L + 
Sbjct: 231  RSAEEMAALFSDIPEAIENTVEIARRCSVSIRLGEPFLPNFPVPE----EHSTESFLAHL 286

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
            A  GL VRL             Y++RLDFEL +I  M F GYFL+V DFI+WAK+  IPV
Sbjct: 287  ANEGLAVRLRALGNP---DPAPYQERLDFELKIINEMGFPGYFLVVMDFIRWAKQQGIPV 343

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
            GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP R+SMPDFD+DFC DRRDEVI YV
Sbjct: 344  GPGRGSGAGSLVAYALEITDLDPLTYDLLFERFLNPQRVSMPDFDVDFCMDRRDEVIDYV 403

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
             + YG E V+QIITFG++ AKA +RDV R    P+   D++ KLIP +    +  +A+  
Sbjct: 404  ADMYGREAVSQIITFGTMAAKAVVRDVARVQDKPFGLADKMSKLIPFEVGMTLE-KALRQ 462

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
            +   ++    D +   + +++ +LEG  R+   HA G+VI    L+   P+Y D      
Sbjct: 463  EDAIKDLLREDSAAQEIWDMAVQLEGATRNVGKHAGGVVIAPSRLTDFSPLYCDEEGGGV 522

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY 609
            VTQ++   +E+AGL+KFDFLGL+TLT++  ++  + +R  +      D+S +P DD   +
Sbjct: 523  VTQYDKNDVEEAGLVKFDFLGLRTLTIIDWAVRMIDERRAREGEAKLDISTLPLDDPAVF 582

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNG 667
             +L    T  +FQLES GM++ ++ ++PDC EDIIALV+L+RPGP+ + +   + +RK+G
Sbjct: 583  KVLQQAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHG 642

Query: 668  KEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            +E++        HP++ P+L+ T G+I+YQEQVMQIAQ L+GY+L  AD+LRRAMGKK  
Sbjct: 643  REQVSYPDAQYQHPVLQPILEPTYGIILYQEQVMQIAQELAGYTLGGADLLRRAMGKKKL 702

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EEM KQ+  F  GAS+ GI   +A  IF+L+ KFA YGFNKSH+AAYA++SYQTAW+K H
Sbjct: 703  EEMAKQRSVFAEGASRKGIDPDLATRIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAH 762

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
            YP EF+AA M+ E+DN +K+     + +Q  I + PP  N     F V     I Y L A
Sbjct: 763  YPAEFMAAVMSSELDNTDKLITLRDECKQLGITVRPPDANEGEYAFSVNDRGEIIYGLGA 822

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKG+G      I+ A    PF  L +FC R D +K+NRR +E+L+ +GALD  G  R  +
Sbjct: 823  IKGLGEGPVESILAARNAGPFVDLFEFCDRTDPRKVNRRAIEALINSGALDGLGVERWIM 882

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE---KFSVENSSVRFENEQRV 958
            + ++++  + A+    N      ++F             E        +S      E+  
Sbjct: 883  MSAVEDALRAAEQAANNTAAGMGDLFGDVLAAGHRHDPYEHHRNARPWSSKRLLNGEKES 942

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +G + SGHP++ Y+  +RK   +   +  A    N+  +A ++VS +  +T++G  +  +
Sbjct: 943  IGSFLSGHPMEEYEAEVRKFASRRIRDLQA---DNSATVAGLIVSVRTIRTQRG-VLAVL 998

Query: 1019 TFSEPAKEYEANFF 1032
               + + + EA  F
Sbjct: 999  GIDDGSGQIEATVF 1012


>gi|152995316|ref|YP_001340151.1| DNA polymerase III subunit alpha [Marinomonas sp. MWYL1]
 gi|150836240|gb|ABR70216.1| DNA polymerase III, alpha subunit [Marinomonas sp. MWYL1]
          Length = 1158

 Score = 1045 bits (2703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1047 (39%), Positives = 591/1047 (56%), Gaps = 39/1047 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SF+HL+VH+ +SL++G + +  +L        PA+AITD NNL   + F + A   GI
Sbjct: 2    STSFIHLRVHTEFSLVDGLVKIKGLLGTTEFMSMPAVAITDENNLCGFVRFYKGAMEKGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI              +         +     LL ++ +GY+ +I ++S+ Y L Q + 
Sbjct: 62   KPIC----------GADVVVAEDDDVDSRYRFTLLATSNKGYKNIIAIISKGYQLGQVEG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   W+ E  +E +I L+G   G I         + A+ RL  +  +F +R YV LQ
Sbjct: 112  RPIIQREWI-ETHSEDVIALSGAGFGDIGYLLQKGRHEQAKNRLAHWMSIFPNRFYVELQ 170

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            R  R  +      VV LA   + P+VATN+  FL  E++EAH+  + +     +    R 
Sbjct: 171  RTSRPGEESYIHAVVPLAGELDCPVVATNDVRFLKRENFEAHEARVCIHDGVTLDDPRRK 230

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R + + Y K   EM  +F D+PEALENTVEIA+RCS  + +    LP +   E   +  
Sbjct: 231  RRYSEEQYFKTPEEMAELFQDIPEALENTVEIAKRCSVDVLLGEYFLPDYPVPEGMTM-- 288

Query: 306  EEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              E      +  GL  R      +         Q+Y  RLDFEL +I +M F GYFLIV 
Sbjct: 289  --EEFFSKLSYDGLIERFNFLTKKYGERIEKRRQEYWDRLDFELTIINQMGFPGYFLIVM 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQWAK N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID
Sbjct: 347  DFIQWAKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDID 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D RD VI YV   YG + V+QIITFG++ AKA +RDV R    PYS  D+L KLIP 
Sbjct: 407  FCMDNRDRVIDYVSRTYGRDAVSQIITFGAMAAKAVVRDVARVQGKPYSLGDKLSKLIPF 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +  +A+ ++    E    D     ++E++  LEG+ R+   HA G+VI    L  
Sbjct: 467  EIGMTLK-KALEEEPALPEFLAGDEDAAEVMEMAISLEGVVRNFGKHAGGVVIAPTKLID 525

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKV 596
              P+Y +      VTQ++   +E+AGL+KFDFLGLKTLT++  ++  +      +    +
Sbjct: 526  FAPLYCEEDGSGLVTQYDKNDVEEAGLVKFDFLGLKTLTVVDWAVKNIDAINELEGKPPL 585

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+SLI  +D  TY LL    T  +FQLES GM++ ++ + P   EDIIALV+LYRPGP+ 
Sbjct: 586  DISLIDLEDRSTYDLLKRAETTAVFQLESRGMKELIKKLLPSRFEDIIALVALYRPGPLG 645

Query: 657  NIVV--YNNRKNGKEK-----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + NRK+G+ +         H  + P+L+ T G+I+YQEQVMQIAQ+L+ +SL  
Sbjct: 646  SGMVDDFINRKHGRAELAFPHPDYQHQDLIPVLEPTYGIILYQEQVMQIAQVLAKFSLGG 705

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  E M +Q+  F+ GA KN I K ++ NIF+L+ KFA YGFNKSH+AAY
Sbjct: 706  ADLLRRAMGKKKPEVMAEQRLIFMEGALKNNIDKDLSGNIFDLMEKFAGYGFNKSHSAAY 765

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQTAW+K HYP  F+AA ++ +M N +KI  F ++ R   + +  P+VN     F 
Sbjct: 766  ALVSYQTAWLKNHYPAPFMAAVLSADMQNTDKIVIFIEECRSMKLALELPNVNESVFKFT 825

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V     I Y L AIKGVG      I+EA  D PF+ + DFC RV  +K+N+RV+E+LV +
Sbjct: 826  VNPKGAIVYGLGAIKGVGEGPIDAIVEARKDGPFEHIFDFCQRV-GRKVNKRVMEALVRS 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVE 946
            GA D  G +R  L   +D   K A    KN+     ++F    E+ T      +      
Sbjct: 885  GAFDTIGPNRATLFACIDEALKRAVQDAKNQDAGMMDLFGITVEENTEDAYREIGIQHEW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                R + E+  LG Y +GHP+D Y+  +R+       +     RG+   +A ++V  + 
Sbjct: 945  PPRQRLDGEKDTLGLYVTGHPIDEYEKEIRRFVRSKIVDLQP-KRGDTQVMAGLIVDLRI 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K++KG  I +VT  + +   E   FP
Sbjct: 1004 TKSKKGGNIAFVTLDDRSARIEVTVFP 1030


>gi|148381587|ref|YP_001256127.1| DNA polymerase III DnaE [Clostridium botulinum A str. ATCC 3502]
 gi|148291071|emb|CAL81534.1| DNA polymerase III, subunit alpha [Clostridium botulinum A str. ATCC
            3502]
          Length = 1194

 Score = 1045 bits (2702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1084 (35%), Positives = 599/1084 (55%), Gaps = 68/1084 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
                F HL +H+ YSLL+GA  +NNI+         +IAITD   ++  ++F + A  AG
Sbjct: 2    SDKKFTHLHLHTGYSLLDGAGKINNIIASAKELGMDSIAITDHGAMYGCVDFYKAAKNAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ IIGC++ I  +    M+ +   P   +  +VLLV    GY+ LI++VS+  + D   
Sbjct: 62   LKAIIGCEVYIVPKS---MSIKNSDPNNKIYHLVLLVKNEIGYKNLIKIVSKASI-DGFY 117

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R    +L++  +EGLI L+    G I       + + A++  L +K +F D  Y+ L
Sbjct: 118  YKPRTDHQFLKD-HSEGLIALSACLGGEIQSNLLNENKEKAKEIALFYKSIFKDGFYLEL 176

Query: 187  QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    +R      ++LA   ++PLVATN+  ++ ++D + HD+L+ +     V++++R
Sbjct: 177  QYHGNDAERKVNDMNIRLARELKIPLVATNDVHYIEQKDSKFHDILLCIQTGKTVNKENR 236

Query: 246  PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R   D  YLK+  EM  +FS +PEAL+NT +IA +C+F    H   LP+F+  E  D  
Sbjct: 237  LRYPSDQFYLKSADEMWEMFSHVPEALKNTEKIAEQCNFHYDFHTSKLPKFLLPEGTD-- 294

Query: 305  KEEENELRNKAVAGLEVR--LAQGAIAK-------------GYHAQDYRQRLDFELNVIA 349
                  ++     GL  R  L +  + K                A+ Y  RL +EL+VI 
Sbjct: 295  --PFEYMKKFCFKGLIKRCDLFRDLLTKSFNINEIIALGKENEEAKIYIDRLQYELSVID 352

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M +  YFLIV+DFI++A +  IP GPGRGSGAGS+ AY L IT IDP+++ L+FERFLN
Sbjct: 353  HMGYVDYFLIVSDFIKFANEKKIPTGPGRGSGAGSLVAYTLGITKIDPIKYGLIFERFLN 412

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPD D DFC +RR E+I YV  KYG E V+QIITFG++ A+  +RDVGRA+   Y
Sbjct: 413  PERISMPDIDSDFCYERRGEIIDYVVEKYGKENVSQIITFGTMAARVCIRDVGRAMNYSY 472

Query: 470  SQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
             +VD++ K+IP  P   +++ +A+A +   +     +  V  L+++S  LEGL RH+STH
Sbjct: 473  VEVDKIAKMIPIVPGIIITIDKALALNPELKNEYENNLRVKELIDVSMNLEGLPRHSSTH 532

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAGI+I   P+   VP+ ++  +   V+QF+M  +++ G +K DFLGLKTLT+L+ ++D 
Sbjct: 533  AAGIIISSSPIGDYVPLQKNEHN--IVSQFDMTTLDELGFLKMDFLGLKTLTVLKDAVDM 590

Query: 589  LAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + Q   V +DL  I  +D E Y ++    T+GIFQLES+GM   ++ ++PD +EDIIA +
Sbjct: 591  IMQNHNVDIDLDKIDINDKEVYKMIGEGKTIGIFQLESTGMTSFMKELKPDSLEDIIAGI 650

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            SLYRPGPID I  Y   K   +KI  + P ++P+LK T G ++YQEQVM+I + L+GYS+
Sbjct: 651  SLYRPGPIDEIPKYIENKKNPDKITYLTPQLEPILKITYGCLVYQEQVMEIVRKLAGYSM 710

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASK------------NGISKTIAVNIFELLAK 755
              +D++RRAM KK  + M+++++ FI G  K            N +S+ I   +F+ +  
Sbjct: 711  GRSDLVRRAMSKKKHKVMEEERKNFIYGIVKEDGEIEVPGCIRNEVSEKIGNELFDSMMD 770

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSHA AYA+++YQTA++  +YP E++AA +   M +  K+  +   A    IQ
Sbjct: 771  FASYAFNKSHAVAYALVAYQTAYLMKYYPAEYIAAKLNSVMGDNGKVAYYINYAESLGIQ 830

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874
            ++PP +N     F V DN I + L AIK VG   A+ I+++   +  F SL DF S++D 
Sbjct: 831  VLPPDINESFSKFIVEDNTIRFGLDAIKNVGIGAAKIIVKSRKKNGNFKSLIDFASKIDL 890

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGT 933
              +N+R +ESL+ AGA DCF   R +LL   + +        K   +   ++F A     
Sbjct: 891  TTINKRAIESLIKAGAFDCFKVFRSRLLAVYEKVLDSISNQRKRNIDGQVSLFNADNTIV 950

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV------ 987
                I   +    +       E+ +LG Y +GHPLD Y   L+       E+ +      
Sbjct: 951  NIPIIKYPEIKEFDKKYLLAMEKEMLGIYITGHPLDEYAQSLKIQTSIRIEKILCSHNKV 1010

Query: 988  ------------------ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                                  G  + +  ++    +K TR  + + ++   + +   E 
Sbjct: 1011 LNDDSIIEISSDNNIIRGDINDGERVVIGGIITKVSRKITRNNTIMAFLKLEDLSGIIEV 1070

Query: 1030 NFFP 1033
              FP
Sbjct: 1071 IVFP 1074


>gi|160872170|ref|ZP_02062302.1| DNA polymerase III subunit alpha [Rickettsiella grylli]
 gi|159120969|gb|EDP46307.1| DNA polymerase III subunit alpha [Rickettsiella grylli]
          Length = 1166

 Score = 1045 bits (2702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1054 (39%), Positives = 615/1054 (58%), Gaps = 51/1054 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF+HL +HS YSL++G + +  ++DK      PA+A+TD +NLF+ ++F Q A   GI+P
Sbjct: 3    SFIHLHLHSEYSLVDGLIRIEKLVDKACELSMPALAVTDLSNLFATIKFYQAAIKKGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +        +K   +G+        ++LL     GY+ LI+L+S+ YL +  +   
Sbjct: 63   IIGAEC------RVKDDQEGQE-----YQLILLCQNLRGYRNLIQLISKSYLENAKEGQP 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             +   W   I +EGLI L+G   G I       +  +A   L  + +LF +R Y+ +QR 
Sbjct: 112  LLQKDWFS-IYSEGLIALSGAREGDIVSCLMKKNKSLAVDYLQFWLRLFPNRFYLQVQRL 170

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
             R  +       V LA +  +P+VATN   FL  ED+EAH+  + + +  +++   R   
Sbjct: 171  GRPLEEEYIELSVGLAASFNVPVVATNEVCFLVPEDFEAHEAKVCINNGYLLNDPKRLKF 230

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   YL++  EMV +F+D+P AL N+VEIA+RC+  +++ A  LP F   E        
Sbjct: 231  YTNQQYLRSMEEMVVLFADIPSALSNSVEIAKRCNLEIELGASFLPNFPIPEGM----SA 286

Query: 308  ENELRNKAVAGLEVRLAQGAIAK---------------------GYHAQDYRQRLDFELN 346
            E  L  +A +GL   L   +  +                         + Y  RL  EL 
Sbjct: 287  EKLLTQEAQSGLTRYLGSQSFLRVSQTKNKEFQPIEKLTSPQTFKAFEKIYFDRLHSELQ 346

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI  M F+ YFLIVADFI+WAKKN IPVGPGRGSGAGS+ AY L IT +DPLR+ LLFER
Sbjct: 347  VINSMGFASYFLIVADFIRWAKKNKIPVGPGRGSGAGSLVAYVLQITGLDPLRYDLLFER 406

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPDFDIDFC + RD VI YV  +YG   V+QIIT+GS+ A+A +RDVGR L 
Sbjct: 407  FLNPERISMPDFDIDFCMEGRDRVIDYVTTRYGRNAVSQIITYGSMAARAVVRDVGRVLG 466

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
             PY  VD++ KLIP +    +  +A+  +   +     +  +  L+++++KLEGL R+  
Sbjct: 467  YPYGMVDKIAKLIPFELGITLE-KALTQEDELKTRYENEDEIKILIDLAKKLEGLVRNVG 525

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HA G+VI    L    P+Y +      +TQF+   IEK GL+KFDFLGL+TLT++   +
Sbjct: 526  KHAGGVVIAPSQLVDFTPLYCERGGTHCITQFDKDDIEKVGLVKFDFLGLRTLTIIDWVV 585

Query: 587  DFLAQRGVKV----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
              + ++        D+  IP DD +T+ LL    T  IFQLES GMR  ++ + PD  ++
Sbjct: 586  QAINKKKKPEEELLDIGTIPLDDVKTFDLLKACKTTAIFQLESRGMRDLIKRLCPDSFDE 645

Query: 643  IIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            I+ALV+L+RPGP+ + +V  + NRK+G+  +   HPL++P+L  T G+I+YQEQVMQIAQ
Sbjct: 646  IVALVALFRPGPLQSGMVDDFINRKHGRAHVQYAHPLLEPILSSTYGIILYQEQVMQIAQ 705

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +L+GY+L  AD+LRRAMGKK  EEM +Q+  F+ GA + GI +++A  IF+L+ KFADYG
Sbjct: 706  VLAGYTLGAADLLRRAMGKKKSEEMAQQRTIFMKGAEQEGIERSLANQIFDLMEKFADYG 765

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSH+ AYA++SYQTAW+KTHY  EF+AA ++ +MD+ +K+  F  + R  N+ I+PP 
Sbjct: 766  FNKSHSVAYALVSYQTAWLKTHYAAEFMAAVLSSDMDHTDKVVIFLDECRAMNLPILPPD 825

Query: 821  VNTPCVDFKVGD--NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
            +N     F V D    I Y L AIKG+G      ++E      F  L D C RVD +KLN
Sbjct: 826  INCSEYKFTVDDDTGAIRYGLGAIKGLGLGAIEMLIEQRQQDAFRDLFDLCQRVDFQKLN 885

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            RR +++L+ +G+LD FG +R  LL++++   + A      +++  ++ F  E  + S+++
Sbjct: 886  RRGIDALICSGSLDSFGLNRATLLENVEAALQAAIQKSLTKSSGQKDFFGLEMVSHSNQM 945

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
            T +K        R + E+  LGFY SGHP++ Y   L         ES+    G+ I +A
Sbjct: 946  THQK--DWPKLERLQAEKDALGFYLSGHPIENYSNELPHFITSSLRESM-IKSGHTITIA 1002

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              V++ +   T++G R+  +T  +     E   F
Sbjct: 1003 GWVLNIRSLWTKRGDRMAILTLEDTNGRLEVTLF 1036


>gi|33593326|ref|NP_880970.1| DNA polymerase III subunit alpha [Bordetella pertussis Tohama I]
 gi|33572682|emb|CAE42605.1| DNA polymerase III alpha subunit [Bordetella pertussis Tohama I]
          Length = 1163

 Score = 1045 bits (2702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/1055 (37%), Positives = 606/1055 (57%), Gaps = 45/1055 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +++ +   P FVHL+VHS +S+ +G + +++++ ++A   QPA+A+TD +N+F  ++F +
Sbjct: 1    MSEAVTNPPPFVHLRVHSEFSVSDGIVRISDLIKRVAKLGQPAVALTDLSNIFGLIKFYK 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AG++P+ G  + +   D+ +              ++LLV   +GY  L EL++R +
Sbjct: 61   GARGAGVKPVAGSDVWLTNDDDREK----------PFRLLLLVRNHQGYLNLCELLTRSF 110

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L +Q K    +   WLQ  G EGLI+L+G   G + +A    ++  A      + +LF  
Sbjct: 111  LENQYKGRAEVRREWLQ--GQEGLIVLSGARGGDVGQALEAGNAVTALSLARQWGQLFPG 168

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR     D       ++LA    LP+VAT+   FL  ++++AH+  + +A   +
Sbjct: 169  SYYIELQRAGFDGDETYTQAAMRLAAEAGLPVVATHPVQFLDRDEFQAHEARVCIAEGEI 228

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R T D YL +  EM   F+D+P AL NTVEIARRC+  L +  P LP F   
Sbjct: 229  LANPRRVRRYTQDQYLLSSEEMARRFADVPSALANTVEIARRCNLTLVLGKPRLPNFPTP 288

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L   +  GLE RL         +      Y +RL +E   I +M F G
Sbjct: 289  DGVTL----DDYLVQLSEEGLEKRLQFLFPDEAERNAKRDQYYERLRWECKTIIQMGFPG 344

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SM
Sbjct: 345  YFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSM 404

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQD R+ VI YV+ KYG E V+QI TFG+L AKA +RD GR L MPY   D L
Sbjct: 405  PDFDIDFCQDNRERVIDYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMPYLFCDAL 464

Query: 476  CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP +PA P +L+  + D+  F++    +  V  L+++++ LEGL R    HA G++I
Sbjct: 465  SKLIPFNPADPWTLERTLKDEPAFKDRYEQEEEVRALVDLARPLEGLTRSIGMHAGGVLI 524

Query: 535  GDRPLSQLVPMYRDVR-SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-- 591
                L+   P+Y      +  V+QF+   +E AGL+KFDFLGL+ LT+L  ++ F+ Q  
Sbjct: 525  APGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRFVRQFN 584

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  D+  +  DD   Y +L    T  +FQLES GM++ L+ ++P   EDIIA+++LY
Sbjct: 585  ADKRDFDVMALSLDDQAAYKVLCDANTTAVFQLESRGMKELLKKLRPSTFEDIIAMLALY 644

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+++ +V  + NRK+G+  +   HP ++  L+ T GVI+YQEQVM I+Q++ GYSL 
Sbjct: 645  RPGPLESGMVDDFVNRKHGRAAVDYFHPDLEGTLRSTYGVIVYQEQVMLISQIIGGYSLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM K +E F  GA + G    +AV +F+L+ KFA YGFNKSH+AA
Sbjct: 705  GADLLRRAMGKKKPEEMAKHRELFEQGAREKGHDPDLAVKLFDLMEKFAGYGFNKSHSAA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+I+YQTAW+K ++P EFLAA+++ +MD+ +K++ F +DA+   ++++PP VN     F
Sbjct: 765  YALIAYQTAWLKAYHPTEFLAATLSSDMDDTDKVQIFVRDAQDNGVEVLPPDVNASGYRF 824

Query: 829  KVGDNR----------IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKL 877
            +   ++          + Y L A+KG G      I+ A  +  PF +L DFC RV    +
Sbjct: 825  EPVADKHTEQGKPPRTMRYGLGAVKGTGQGAVEEILRARQEGGPFANLFDFCRRVSKHAV 884

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR +E+L+ AGA D    +R  +L S+    + A+     R+    ++F  + G     
Sbjct: 885  NRRTIEALIKAGAFDTIEPNRAAMLVSVGTAMEAAEQA--ARSANQSSLFGDDSGDVVAG 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
              L K +  N       E+  LG+YFSGH  D ++  +R++                  +
Sbjct: 943  -ELTKVAPWNLHTTLTEEKTALGYYFSGHLFDAWRDEVRRIVPMQLARLEPQRDLQW--M 999

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++   +   TR+G  + +    +   + E + F
Sbjct: 1000 CGVLAGVRTMMTRRGK-MVFAVLDDGTAQIEISVF 1033


>gi|224534774|ref|ZP_03675346.1| DNA polymerase III subunit alpha [Borrelia spielmanii A14S]
 gi|224514022|gb|EEF84344.1| DNA polymerase III subunit alpha [Borrelia spielmanii A14S]
          Length = 1161

 Score = 1044 bits (2701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1036 (38%), Positives = 608/1036 (58%), Gaps = 25/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 15   MSFRSKFIHLHVHSDYSLLDGAAKISDIVSKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 74

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +         +           ++LL     GY+ L++L S  YL   
Sbjct: 75   AGIKPIIGIEAYMAKTSKFLKKH--DDLGKMSYHLILLAKNELGYKNLLKLTSISYLEG- 131

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 132  FYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 190

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S +
Sbjct: 191  ELQRHGIKDQDIVNERLVEYSRELGVPLTAANDSHYVNREDAVAQDIIVCIGTGAKKSDE 250

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC-SFILQVHAPILPRF-IEKEC 300
            +R    T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E 
Sbjct: 251  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDEFKITFPGPILPDYQIPIEF 310

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D +       L    + GL+ R               + R  +EL VI RM F GYFLIV
Sbjct: 311  DTLG----EYLEYLTLEGLKFRY-------KTLTSKIKDRAFYELGVIIRMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  ++IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDHDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV N+YG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNRYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              P   VSL+ + +D+  +E   + P    L++ +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  EGPK--VSLKEVLNDNSLKEYFTSKPIYKELMDAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFRIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+ +L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFKMLGEGKSASVFQFESEGMQQILKDTKPDNIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRSTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAVEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFVRRVDDKVINKKFLESAIKSGLFDSLDKNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F     + +       + F   + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFDVLGSQESIQQSFNYQVFEEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +         + +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAINNFSSLNVLKDLAAKKDSTVQFSGILNSVKIIQTKRNNSKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGSIDIVVF 1033


>gi|261492352|ref|ZP_05988914.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            serotype A2 str. BOVINE]
 gi|261312035|gb|EEY13176.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            serotype A2 str. BOVINE]
          Length = 1142

 Score = 1044 bits (2701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1031 (39%), Positives = 597/1031 (57%), Gaps = 38/1031 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            ++ G   + +++    A+   A+ +TD  N    ++F  +A  AGI+PIIG  + +    
Sbjct: 1    MINGLAKVKSLVKTAVANNMVAMGLTDFTNFCGLVKFYGEALGAGIKPIIGADVYV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  + +        + LL    +GY  + +++S+ Y     +    +   WL E+  
Sbjct: 57   ------RTEAGSEDYFELTLLAKNNKGYHNITQILSKAYQQGYIEF-PMVEREWLAEL-N 108

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQV 200
            EG+I+L+GG  G + +A    + Q AE+++  +++ + +  Y+++ R    D  R   Q 
Sbjct: 109  EGIIILSGGRMGDVGKALLKENRQEAEEKVAFYQQYYPNHFYLSVCRTGRADEERYIKQA 168

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+ +  + +PLVA N+ +FL E+D++AH++ +A+  S  +    RP+  +P  Y +   E
Sbjct: 169  VEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPKQYFRTEEE 228

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+DLP AL NTVEIA+RCS  +++    LP F   E        E+ L  K+  GL
Sbjct: 229  MCKLFADLPSALANTVEIAKRCSVTVRLGEYFLPNFPTGEL-----STEDFLVKKSKEGL 283

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +      Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGP
Sbjct: 284  EERLEFLFPDPEERANKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 343

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D RD VI +V  
Sbjct: 344  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 403

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLIP DP   +  +A A + 
Sbjct: 404  TYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPGMTLE-KAFAAEP 462

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 463  KLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLHPVT 522

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611
             F+   +E AGL+KFDFLGL+TLT+++ +L+ + +R        + +  I  DD +++ L
Sbjct: 523  HFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINERLAREGKEPIRIETISLDDKKSFAL 582

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+++ +   + +RK+GKE
Sbjct: 583  LLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGKE 642

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++        H  + P+L+ T GVI+YQEQVMQIAQ L+GY+L  AD+LRRAMGKK  EE
Sbjct: 643  EVSYPDPQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEE 702

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M  Q+E F  GA   GI   +A  IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 703  MAAQREVFEKGAEAKGIDGKLAGQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 762

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA MT EMDN +KI  F  +     + ++PP VN+    F V +     Y L AIK
Sbjct: 763  AEFMAAVMTSEMDNTDKIVGFYDECMNMGLTVVPPDVNSGKHRFSVNEKGEIVYGLGAIK 822

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+ A   +  F  L D  +RVD KK+NRR  ESL+ +GA D  G  R  L+
Sbjct: 823  GVGEGPIEAILAARQKEGKFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAALM 882

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGF 961
            ++L++  K +    K       ++F     T  + +         +  V  + E+  LG 
Sbjct: 883  KNLEDALKASDQHAKMEELGQSDMFGVLTETPEEVQNAYANTPKWSEQVILDGERATLGL 942

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y SGHP+  +   L         E   T RG    ++ +V++ +   T++GSRIG  T  
Sbjct: 943  YLSGHPIGRFLKELSHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVTKRGSRIGIATIE 1002

Query: 1022 EPAKEYEANFF 1032
            + + + +   F
Sbjct: 1003 DRSGKLDITLF 1013


>gi|323525323|ref|YP_004227476.1| DNA polymerase III subunit alpha [Burkholderia sp. CCGE1001]
 gi|323382325|gb|ADX54416.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1001]
          Length = 1196

 Score = 1044 bits (2701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1042 (38%), Positives = 603/1042 (57%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL++HS +S+ +G + L++++   A D Q A+A+TD  N F  + F ++A   G
Sbjct: 5    SDPRFVHLRLHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKG 64

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI GC + I   D+                ++LLV    GY  L EL+S+  L +Q +
Sbjct: 65   VKPIAGCDVWITNPDD----------RDKPSRLLLLVKDRRGYLNLCELLSKASLTNQYR 114

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +   WL+    EGL+ L+G   G I  A    + + A +  L + K+F    Y+ L
Sbjct: 115  GRAEVEAGWLESGLGEGLLALSGAQQGDIGLALAAGNQEAARRNALHWAKVFPGGFYIEL 174

Query: 187  Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q   +        Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++   R
Sbjct: 175  QRCGQPGGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRR 234

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R TP+ Y + + EM ++F+D+P AL N+VEIA+RC+  L++  P LP F   +   + 
Sbjct: 235  QKRFTPEQYFRTQDEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSL- 293

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L + +  GLE RL Q       +    + Y QRL+FE   I +M F GYFLIVA
Sbjct: 294  ---DDYLVHLSKEGLEKRLEQLYPDEAERAAQRETYYQRLEFECGTIIKMGFPGYFLIVA 350

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 351  DFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDID 410

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 411  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPF 470

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LLE++Q++EGL R+   HA G++I    L+
Sbjct: 471  KPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLT 530

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 531  DFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKKDWS 590

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPGP+D 
Sbjct: 591  LGQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDL 650

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 651  IPSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 710

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM + +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 711  GKKKPEEMAQHRELFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 770

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP +N     F+        
Sbjct: 771  WLKAHHPAEFMAANMSLAMDDTDKVKILFEDCIVNKMAVLPPDINLSAYRFEPVAEADGK 830

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  D PF  + DFC+R+D + +NRR +E+L+ AGA
Sbjct: 831  RSRTIRYGLGAIKGSGQNAIEEILRAREDGPFIDIFDFCNRIDRRVVNRRTIEALIRAGA 890

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QL+ S+    + A+    N       +F       S    L          
Sbjct: 891  FDSLHQNRAQLIASVSLAMEAAEQASANAL--QAGLF-DMGDAPSQGHELVDEPEWPEKK 947

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            + + E+  LGFY SGH  D YK  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 948  KLQEEKAALGFYLSGHLFDAYKDEVRRFVRQKIGEL---KEGRDKLVAGIIASLRTQMTQ 1004

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1005 RGK-MLIALLDDGTGQCEVTVF 1025


>gi|117928262|ref|YP_872813.1| DNA polymerase III subunit alpha [Acidothermus cellulolyticus 11B]
 gi|117648725|gb|ABK52827.1| DNA polymerase III, alpha subunit [Acidothermus cellulolyticus 11B]
          Length = 1190

 Score = 1044 bits (2700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1057 (35%), Positives = 564/1057 (53%), Gaps = 45/1057 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA  + ++L +  A   PAIA+TD  N++ A +F ++A A GI P
Sbjct: 24   SFVHLHVHTEYSMLDGAARIKDLLAETVAMGAPAIAMTDHGNVYGAYDFYKQARACGINP 83

Query: 70   IIGCQLDIDMQDNLKMTN--------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            IIG +  +                    +        I LL    +G   L  L S   L
Sbjct: 84   IIGMEGYLAPGSRFDRRRVSLATAGPGDENAGEMYTHITLLAENTDGMHNLFRLSSLASL 143

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GD 180
                    R+    L     +G+I  TG  S  ++R         A +    ++ +F  +
Sbjct: 144  EG-FYYKPRMDRELLATYA-KGIIATTGCPSSEVNRLLQQGKYAAARQAAAEYRDIFGAE 201

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  L  H    +R     +++LA    LPL+ATN+  +   +D+EAH+VL+ V     
Sbjct: 202  NFYCELMDHGLEIERRVRDDLLRLARELRLPLLATNDLHYTYAQDWEAHEVLLCVQTGKT 261

Query: 240  VSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++  +R +    + YLK  ++M  +F DLPEA +NT+ IA R        A ++PRF   
Sbjct: 262  LADPNRFKFDAKEFYLKTPAQMRELFRDLPEACDNTLAIAERVHVEFAEGANLMPRFPVP 321

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              +     EE+ L  +  AGL  R   G          YR+R ++EL VI +M F GYFL
Sbjct: 322  PGE----TEESWLVKEVEAGLHRRFPSGV------PDAYRERAEYELTVICQMGFPGYFL 371

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +VAD +++AK+N I VGPGRGS AGS+ AYAL IT++DP++  LLFERFLNP+R+SMPD 
Sbjct: 372  VVADLVRYAKENGIRVGPGRGSAAGSMVAYALGITELDPIKHKLLFERFLNPERVSMPDI 431

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDF + RR ++IRY   KY  + VAQIIT+G+++AK A++D  R L  PY+  DR+ KL
Sbjct: 432  DIDFDERRRGDMIRYATQKYREDHVAQIITYGTIKAKQAIKDSARVLGYPYAISDRITKL 491

Query: 479  IPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            +P       +SL AI D S         FR     DP V ++++ ++ LEGL R    HA
Sbjct: 492  MPPALMGRDLSLAAIFDPSHPRYAEAAEFRAVYENDPDVRKIVDTARNLEGLKRQWGVHA 551

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            AG+++   PL  ++P+ R  +    +TQF+M   E  GL+K DFLGL+ LT+L   L  +
Sbjct: 552  AGVILSREPLLDVIPIQRREQDGAIITQFDMGACEALGLLKMDFLGLRNLTVLDDCLAGI 611

Query: 590  A-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
               RG+ + L  +P DD  TY LL    TLG+FQL+   MR  L  M+PD  EDI A+++
Sbjct: 612  KANRGIDLVLEEVPLDDPATYELLQRGETLGVFQLDGGPMRALLRSMRPDNFEDISAVLA 671

Query: 649  LYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVMQIAQLL 702
            LYRPGP+  +  + Y +RKNG++ +  IHP +      +L +T GVI+YQEQV+ IAQ +
Sbjct: 672  LYRPGPMGANAHIEYADRKNGRKPVEPIHPELAEPLADILDDTYGVIVYQEQVIAIAQRV 731

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +GYSL +AD+LRRAMGKK KE +DK+   F  G  KNG S+     ++E+L  F+DY FN
Sbjct: 732  AGYSLGQADLLRRAMGKKKKEILDKEYIPFSEGMRKNGYSEDAIRTLWEILVPFSDYAFN 791

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            K+H A Y ++SY TA++K +YP E++AA +T   D+ EK   +  + R+  I+++PP VN
Sbjct: 792  KAHTAGYGLVSYWTAYLKANYPAEYMAALLTSVKDDKEKSALYLHECRRMGIRVLPPDVN 851

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRV 881
                +F    + I + L+A++ VG      I+E   +   F    DF ++V+    N++V
Sbjct: 852  ESDTNFTPRGDDIRFGLSAVRNVGENVVASIIETRRSKGRFTDFFDFLAKVEPVVCNKKV 911

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            +ESL+ AGA D  G++R  LL     +       ++       ++F            + 
Sbjct: 912  VESLIKAGAFDSLGHTRRGLLAVHAEVVDSVMETKRAHAVGQFDLFGSAADAPEAVSIVR 971

Query: 942  KF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIRGNNIR 996
            +          V    E+ +LG Y S HPL   + +L ++               G  I 
Sbjct: 972  RPISDEEWEKPVLLAAEREMLGLYVSDHPLLGVEHVLARLVDCSIAALTDDERPDGAQIT 1031

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  +VVS  ++ TR+GS    VT  +     E   FP
Sbjct: 1032 IGGIVVSLTRRVTRQGSPWAVVTLEDLDGSIEVLVFP 1068


>gi|269798464|ref|YP_003312364.1| DNA polymerase III subunit alpha [Veillonella parvula DSM 2008]
 gi|269095093|gb|ACZ25084.1| DNA polymerase III, alpha subunit [Veillonella parvula DSM 2008]
          Length = 1135

 Score = 1044 bits (2700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1032 (35%), Positives = 603/1032 (58%), Gaps = 27/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ +SLL+G   L +++ +     QPA+AITD  N+++A+ F ++  A G++P
Sbjct: 3    PFVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +   +              +  ++LL  T EGY+ L+++VS+        +  
Sbjct: 63   IIGCEVYVTENNRFDRPE--GRSRERLKHLILLAETMEGYRNLVKIVSKASTEGMLYR-P 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R     L++  ++G+I L+    G I +    ++ + A++ +  + + +  D  ++ +Q 
Sbjct: 120  RADRDLLRQY-SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQN 178

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +  + + ++++L+  + L +VA+N+  ++ +ED +A D+ + ++     ++ DR +
Sbjct: 179  HGLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLK 238

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  YLK+  EM  +F  +P A+ENT++IA RC+         LP F   E +     
Sbjct: 239  FPNDEFYLKSGDEMAELFGHIPGAIENTLKIAERCNVEFNFDEHHLPHFDVPEGE----T 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  LR      +           G  +++ ++RLD+EL+VI  M F  YFLIV D++++
Sbjct: 295  SKTYLRKVCEREIPRLY-------GETSEELQKRLDYELDVIGTMGFEDYFLIVWDYVRY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++
Sbjct: 348  AREHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEK 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R + I YV  KYG  RV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+    
Sbjct: 408  RGQAIEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELG-- 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            ++L         +    ADP+V  L +  +KLEG+ R++STHAAG+VI   PL   VP+ 
Sbjct: 466  ITLDKALQGKELKALYEADPNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPVQ 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                    VTQ++   IE+ GL+K DFLGL+TLT++  +L  +   RG+ +DL  IP DD
Sbjct: 526  NANDEGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
                 LLT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +V  + +
Sbjct: 585  KAACDLLTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFID 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK + 
Sbjct: 645  RRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKES 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  Q+E FI G+ KNGI +++A  +F+LL  FA YGFNKSH+AAYA I+YQTA++K HY
Sbjct: 705  VLKAQRESFIQGSVKNGIDESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHY 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              EF+AA+MT  M N++K+  +    ++ N++++ P +N     F V D+ I + L  IK
Sbjct: 765  FPEFMAATMTSFMQNMQKLTYYINSCKKHNVKVLGPDINYSERSFAVQDDAIRFGLGGIK 824

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      ++        +  + DFC RVD+K +N+R+LESL+  G++D F  +R QLL
Sbjct: 825  NVGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGSMDGFKENRNQLL 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
               ++ Q      +K+      N+F   +    D I +      +   + ++E+   GFY
Sbjct: 885  HMYESAQAVGAKEQKDAAMGTMNLFGDMEEAV-DFIPVPNVEDLSEDDKLKDEKEYTGFY 943

Query: 963  FSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             +GHPL  Y   L  +  +    E+     G  I    ++ +K  + T++   +  +   
Sbjct: 944  ITGHPLQGYAKELEGLFELGALAENPEQYDGQTITFGGLIENKSDRMTKRNEVMSILRIE 1003

Query: 1022 EPAKEYEANFFP 1033
            + +       FP
Sbjct: 1004 DYSGAANVVAFP 1015


>gi|152992163|ref|YP_001357884.1| DNA polymerase III subunit alpha [Sulfurovum sp. NBC37-1]
 gi|151424024|dbj|BAF71527.1| DNA polymerase III, alpha subunit [Sulfurovum sp. NBC37-1]
          Length = 1188

 Score = 1044 bits (2700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1064 (36%), Positives = 608/1064 (57%), Gaps = 43/1064 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +++  +  P F HL +H+ YSLL+GA  +  +  K+      ++A+TD  N+F  ++F  
Sbjct: 1    MSEEPKLKPQFTHLHLHTEYSLLDGANKIKALAKKVKELGMTSVAMTDHGNMFGTIDFYN 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
                 GI+PIIG +  +  Q  L     G         + L      GY+ L+ L S+ Y
Sbjct: 61   TMRKEGIKPIIGMEAYVHNQPEL-----GDKSVRQRFHLCLYAKNEAGYKNLMFLSSKAY 115

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA---------FFFNSSQVAEKRL 171
            +        RI  + L+E   EGL+  +    G ++           F     + A++  
Sbjct: 116  IEG-FYYYPRINWNLLKE-HAEGLVCSSACLQGEVNWHLNLSERNLKFGAKGYEEAKRIA 173

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            L +K++FGD  Y+ L RH   D++R + Q++QL+    + +VATN++ + + +D +AH+ 
Sbjct: 174  LKYKEVFGDDFYLELMRHGIGDQHRIDKQILQLSQETGIKIVATNDTHYTNPQDADAHEA 233

Query: 231  LMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             M +A + +    +R R +  + Y+K+  +M  +F+D+PEALE T EI  +C+  +++  
Sbjct: 234  FMCIAMNKLYDDPNRLRHSVHEFYVKSPEQMAELFADIPEALEATQEIVDKCNLEIKLGN 293

Query: 290  PILPRF--------------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
            P  P F               E E +   + ++     ++  GL  RL      K    Q
Sbjct: 294  PTPPNFKFAREKAKEIGLKLPEPEVEYSLENDKILFIEESKRGLVERLKIVPEEKH---Q 350

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            +Y  RL  E+++I  MKF GY LIV +F+  AK+  IPVGPGRGS AGS+ AYAL ITDI
Sbjct: 351  EYWDRLQVEIDIINNMKFPGYMLIVWEFVDAAKRMGIPVGPGRGSAAGSLVAYALRITDI 410

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DP+ + LLFERFLNP+R+SMPD D+DFCQ RR E++ YV  KYG   VAQIITFG L AK
Sbjct: 411  DPMPYGLLFERFLNPERISMPDIDMDFCQARRQEILDYVVEKYGRVNVAQIITFGKLLAK 470

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
              +RDV R L MPYS+ D + KLIP++    +       + + +E   +DP   R  E +
Sbjct: 471  GVIRDVARVLDMPYSKADAMAKLIPDELGIDLKAS-YEKEPKIKELLESDPQAKRTWEYA 529

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
              LEGL R+A THAAG+VI +  L Q  P+++    D   TQ++ K++E   LIKFDFLG
Sbjct: 530  LALEGLNRNAGTHAAGVVISNEALWQKTPLFKPSGLDTLATQYSGKYVEDVDLIKFDFLG 589

Query: 576  LKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            LKTLT+++++L  + +R   +++      +D + Y  ++T  TLG+FQ+ES+GM+   + 
Sbjct: 590  LKTLTVIEEALQLVEKRHGKRINFVEENIEDPKVYDYISTGETLGLFQIESAGMQDLAKK 649

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            ++P   EDIIA+++LYRPGP+++ +   +  RK+G+ +I    P ++P+LK T GVI+YQ
Sbjct: 650  LKPSSFEDIIAMLALYRPGPMESGMLDDFVERKHGRAEITYAFPELEPILKPTYGVIVYQ 709

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQI Q + G+SL  AD++RRAMGKKIKEEMDK K+ F  GA++ G  +  A ++F+L
Sbjct: 710  EQVMQIVQTIGGFSLGGADLVRRAMGKKIKEEMDKLKDEFAEGAAEKGFDRAKAADLFDL 769

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE +N +K+ K+  + +Q 
Sbjct: 770  IVKFAGYGFNKSHSAAYAMVTFYTSYLKYYYPTEFMAAILTLEKNNTDKVVKYVDELKQM 829

Query: 813  NIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
             I+++PP +N   + F+     GD  + + + AIKG G      ++EA  +  F    DF
Sbjct: 830  GIKLLPPDINRSGLVFEATNIDGDEVVMFGMGAIKGAGDIAITSMLEAREEGAFRDFSDF 889

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             SR+DS K+N++V+ESL+ AGALD FGYSR  +L  +++I   A+   + R     ++F 
Sbjct: 890  VSRIDSSKVNKKVIESLIKAGALDSFGYSRKAMLSQIEDIIDTAKKAGEARKMAVGSLFG 949

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
              +   S  + L            E E+  LGFY SGHPLD Y+  L  +      E   
Sbjct: 950  EGEEMTSVTLELSHMEEFEPMEILEMEKESLGFYVSGHPLDKYRETLESINYTLSSEIDD 1009

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               G+       + S  +K ++KG++ G     +     E   F
Sbjct: 1010 LADGSQALFIGKIESITEKISKKGNKFGIANIMDLHGNIELMLF 1053


>gi|209522938|ref|ZP_03271495.1| DNA polymerase III, alpha subunit [Arthrospira maxima CS-328]
 gi|209496525|gb|EDZ96823.1| DNA polymerase III, alpha subunit [Arthrospira maxima CS-328]
          Length = 1219

 Score = 1044 bits (2699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1083 (36%), Positives = 613/1083 (56%), Gaps = 72/1083 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  L  ++ +      PAIA+TD   ++ A+E  +   + GI+P
Sbjct: 2    SFVGLHIHSDYSLLDGASQLPQLVSRAVELGMPAIALTDHGVMYGAIELIKICRSKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
            IIG ++ +   D        K         V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62   IIGNEMYVLNADVTVQQRGIKK-----YHQVVLAKNTQGYKNLVKLTTISHLKGFQGKGI 116

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L+E   EGLI+ +    G + +A       +A + +  +K++FGD  Y+ 
Sbjct: 117  FARPCINKELLEEYH-EGLIVTSACLGGEVPQAILQRRMDIARQTVEWYKRVFGDDYYLE 175

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR     +VQLA   E+ +VATN+S F+S  D EAHD L+ +    ++++ +
Sbjct: 176  IQDHGSPEDRIVNVALVQLAREFEVKIVATNDSHFISCNDVEAHDALLCINTQKLITEDN 235

Query: 245  RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCS-FILQVHAPILPRFIE 297
            R R +   YLK+  EM+ +F D      + EA+ NT+E+A +   +   +  P +P +  
Sbjct: 236  RLRYSGTEYLKSAEEMMQLFRDHLPDEVIKEAIANTLEVAEKVEPYTGILGEPRIPDYPI 295

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                      +  L   A  GL+ RL   A  +      YR+RL++EL ++ +M F+ YF
Sbjct: 296  PPN----HTADTYLEEIAWEGLKKRL--NAQGRSEIKPVYRERLEYELKMMQKMGFATYF 349

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+V D+I+ A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD
Sbjct: 350  LVVWDYIKHARDNHIPVGPGRGSAAGSLVAYALQITNIDPVHHGLLFERFLNPERKSMPD 409

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D DFC DRRDE+I+YV +KYG E+VAQIITF  + +KA L+DV R L +PYS+ D++ K
Sbjct: 410  IDTDFCIDRRDEMIKYVTSKYGEEKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAK 469

Query: 478  LIPNDPAHPVSLQAIADD----SRFREARLAD--------------PSVDRLLEISQKLE 519
            +IP     P  L+ +  D      F++A   D               +V + ++++ ++E
Sbjct: 470  MIPVSRGKPTKLKVMISDQSPSPEFKQAYDNDFVPIKNDAGEEVGTIAVRQWVDMAIRIE 529

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G  +    HAAG+VI  +PL ++VP+ R+      +TQ+ M+ IE  GL+K DFLGLK L
Sbjct: 530  GTNKTFGVHAAGVVISKQPLDEIVPLQRN-NDGSVITQYFMEDIEALGLLKMDFLGLKNL 588

Query: 580  TLLQKSLDFLAQRG--------------VKVDL------SLIPFDDHETYHLLTTKGTLG 619
            T++Q++L++++Q                  +D+        +P D  +TY +L      G
Sbjct: 589  TIIQRTLNYISQNHHLDIDPYNLAADERKAMDILAKGAVKKMPEDVAKTYKILERGDLEG 648

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL 677
            +FQLESSGMRQ ++ ++P  IEDI ++++LYRPGP+D   I  + NRK+ +E I   H L
Sbjct: 649  LFQLESSGMRQIVKDLKPSSIEDISSILALYRPGPLDAGLIPQFINRKHKREPIRYEHKL 708

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++P+L ET G+++YQEQ+M++AQ L+GYSL +AD+LRRAMGKK   EM K +E FI GA+
Sbjct: 709  LEPILNETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKASEMQKHRETFIDGAT 768

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            +NG+ + IA ++F+ + KFA+Y FNKSH+ AY  I+YQTA++K +YP E++AA +T    
Sbjct: 769  RNGVPQNIAEHLFDQMVKFAEYCFNKSHSTAYGYITYQTAYLKANYPTEYMAALLTENSG 828

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
            N +K++ + +  +   I ++PP +N   VDF   +NRI + L+AIK VG     H++   
Sbjct: 829  NTDKVRAYIESCKHLGIDVVPPDINRSNVDFTPIENRIVFGLSAIKNVGDGAIEHLLSVR 888

Query: 858  AD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
             +  PF SL D C R++ + +N R LESL+ +GA D    +R Q ++ L+ +  +AQ   
Sbjct: 889  EEGGPFRSLADLCDRINLQMVNSRALESLIKSGAFDSLHANRKQSIEYLNIVIPWAQDRA 948

Query: 917  KNRTNKHENIFAH------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            KNR     N+F        E  + S +    K        + + E+ +LGFY S HPL  
Sbjct: 949  KNREIGQTNLFDLVNYATTESNSPSGEPAFPKGDDYAPKDKLQFEKELLGFYVSDHPLKS 1008

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                         ++         +++A ++++ +   T+KG R+ ++   +   + +A 
Sbjct: 1009 LLDSGILPDNVTLDKLPEQKSKAAVKVAVILINIKPHLTKKGDRMAFLLLEDLTGQIDAV 1068

Query: 1031 FFP 1033
             FP
Sbjct: 1069 VFP 1071


>gi|296159171|ref|ZP_06841998.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1]
 gi|295890732|gb|EFG70523.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1]
          Length = 1193

 Score = 1044 bits (2699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1042 (38%), Positives = 607/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++++   A D Q A+A+TD  N F  + F ++A   G
Sbjct: 5    SDPRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKG 64

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI GC + I   D+ +              ++LLV    GY  L EL+S+  L +Q +
Sbjct: 65   VKPIAGCDVWITNPDDREK----------PSRLLLLVKDRRGYLNLCELLSKASLTNQYR 114

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL+    EGL+ L+G   G +  A    + + A++  L + K+F    Y+ +
Sbjct: 115  GRAEIEAGWLESGLGEGLLALSGAQQGDVGLALAAGNEEAAKRNALHWAKVFPGGFYIEV 174

Query: 187  Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q   +    +   Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++   R
Sbjct: 175  QRCGQPGGEHYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRR 234

Query: 246  -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R TP+ Y + + EM ++F+D+P AL N+VEIA+RC+  L++  P LP F   +   + 
Sbjct: 235  SKRFTPEQYFRTQEEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSL- 293

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L + +  GLE RL Q    A  +    + Y QRL+FE   I +M F GYFLIVA
Sbjct: 294  ---DDYLVHLSKEGLEKRLEQLYPDAAEREAQRETYYQRLEFECGTIIKMGFPGYFLIVA 350

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 351  DFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDID 410

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 411  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPF 470

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LLE++Q++EGL R+   HA G++I    L+
Sbjct: 471  KPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLT 530

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 531  DFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWS 590

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPGP+D 
Sbjct: 591  LAQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDL 650

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+E +    P ++ +LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 651  IPSFCARKHGREVVEYPDPRVESVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 710

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM + +E F  GA+KNG++   A  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 711  GKKKAEEMAEHRELFRQGAAKNGLAGEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 770

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP VN     F+        
Sbjct: 771  WLKAHHPAEFMAANMSLAMDDTDKVKILFEDCLVNKMAVLPPDVNLSAYRFEPVAEADGK 830

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  + PF  + DFC+RVD + +NRR +E+L+ AGA
Sbjct: 831  RSRTIRYGLGAIKGSGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALIRAGA 890

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QL+ S+    + A+    N       +F     + S    L          
Sbjct: 891  FDTLHANRAQLIASVSLAMEAAEQASANAL--QAGLF-DMGDSPSQGHELVDEPEWPEKK 947

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            + + E+  LGFY SGH  D YK  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 948  KLQEEKAALGFYLSGHLFDAYKDEVRRFVRQKIGEL---KEGRDKLVAGVIASLRTQMTQ 1004

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1005 RGK-MLIALLDDGTGQCEVTVF 1025


>gi|160939913|ref|ZP_02087260.1| hypothetical protein CLOBOL_04804 [Clostridium bolteae ATCC BAA-613]
 gi|158437347|gb|EDP15112.1| hypothetical protein CLOBOL_04804 [Clostridium bolteae ATCC BAA-613]
          Length = 1161

 Score = 1044 bits (2699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1048 (35%), Positives = 575/1048 (54%), Gaps = 41/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +  +  +       ++A+TD   ++  ++F + A  AGI+P
Sbjct: 2    AFTHLHVHTEYSLLDGSCKIRELTARAKELGMDSMAVTDHGVMYGVIDFYKAAREAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +          +  +       +VLL    +GY+ L+++VS+ ++ D      
Sbjct: 62   ILGCEVYVAPGSRFDR--ETVSGEDRYYHLVLLAENNKGYENLMKIVSKGFV-DGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L+    EG+I L+   +G + R       + A +    +  +F  D  ++ LQ 
Sbjct: 119  RVDYEVLRTYH-EGVIALSACLAGEVQRCLTRGMYEEAVRASEKYVDIFGKDNFFLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+      +++++    L LVATN+  +   ED +AHD+L+ +     V+ +DR R
Sbjct: 178  HGLPDQKLVNQGLMRMSRDTGLKLVATNDIHYTFAEDEKAHDILLCIQTGKKVADEDRMR 237

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y K+  EM ++F   PEA+ENT  IA RC+  ++     LP++   E  D    
Sbjct: 238  YEGGQYYCKSEEEMRALFPYAPEAIENTHMIAERCNVEIEFGVTKLPKYEVPEGFD---- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L +    G + R                 RLD+EL+VI  M +  YFLIV DFI +
Sbjct: 294  SWSYLNHLCREGFKTRYPDDDGT-------LSSRLDYELDVIRSMGYVDYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I VGPGRGS AGS+ +Y L IT+IDP+R++LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 347  ARSQDIIVGPGRGSAAGSIVSYTLGITNIDPVRYNLLFERFLNPERVSMPDIDIDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG ++V QI+TFG+L AK  +RDVGR L +PYS  D + K+IP D    
Sbjct: 407  RQEVIDYVVRKYGKDQVVQIVTFGTLAAKGVVRDVGRVLDLPYSLCDTIAKMIPGDLGMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   ++A   D  V  L+++S++LEGL RH S HAAG+VIG R + + VP+ 
Sbjct: 467  LD-KALTMNPDLKKAYNEDEQVHYLIDMSRRLEGLPRHTSMHAAGVVIGSRSIDEFVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            R        TQF M  IE+ GL+K DFLGL+TLT++Q ++    +   + +D+  I FDD
Sbjct: 526  RAS-DGTITTQFTMTTIEELGLLKMDFLGLRTLTVIQNAVRLAEKDYGITIDIDHIDFDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +    + T  T G+FQLES+GM+  ++ ++ + +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 585  KKVLESIGTGRTEGVFQLESAGMKSFMKELKAENLEDIIAGISLYRPGPMDFIPKYLKGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N +  I    P ++P+L  T G I+YQEQVMQI + L+GY++  +D++RRAM KK    M
Sbjct: 645  NDRASITYDCPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSKKKTSVM 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K+++ F+         G   NGI +  A +I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 705  EKERQNFVYGSQSEGVKGCVNNGIDEKTANHIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            ++K +YP EF+AA MT  MDNV K  ++     R   I ++PP +N     F V  + I 
Sbjct: 765  YLKYYYPREFMAALMTSVMDNVSKFSEYVLTCRRMMGIPVLPPDINEGESGFSVSGDAIR 824

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y L+AIK VG      I+     + PF S+EDF  R+  K++N+R LE+ + +GALD   
Sbjct: 825  YGLSAIKSVGKPVTEVILAERERNGPFRSMEDFVGRMSMKEVNKRTLENFIKSGALDTLP 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFE 953
             +R Q +     + +     +K+      ++F  A E+     +IT       +      
Sbjct: 885  GTRRQKMAVAPTMLEEKAREKKSMFEGQLSLFDIAGEEDRNEFQITFPDVGEYSKDELLA 944

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYE--------ESVATIRGNNIRLAAMVVSKQ 1005
             E+ +LG Y SGHPLD Y+   R+               ++     G+   +  +V  K 
Sbjct: 945  FEKEILGVYISGHPLDDYEDTWRRNITATSAQFIVDEETDAAGVADGSRAVIGGLVAGKT 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K TR    + ++T  +     E   FP
Sbjct: 1005 VKTTRTNQLMAFITLEDLLGPVEVIVFP 1032


>gi|291567264|dbj|BAI89536.1| DNA polymerase III alpha subunit [Arthrospira platensis NIES-39]
          Length = 1219

 Score = 1044 bits (2699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1083 (36%), Positives = 614/1083 (56%), Gaps = 72/1083 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  L  ++ +      PAIA+TD   ++ A+E  +   + GI+P
Sbjct: 2    SFVGLHIHSDYSLLDGASQLPQLVSRAVELGMPAIALTDHGVMYGAIELIKICRSKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
            IIG ++ I   D        K         V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62   IIGNEMYILNADVTVQQRGIKK-----YHQVVLAKNTQGYKNLVKLTTISHLKGFQGKGI 116

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L+E   EGLI+ +    G + +A       +A + +  +K++FGD  Y+ 
Sbjct: 117  FARPCINKELLEEYH-EGLIVTSACLGGEVPQAILQRRMDIARQTVEWYKRVFGDDYYLE 175

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR     +VQLA   E+ +VATN+S F+S  D EAHD L+ +    ++++ +
Sbjct: 176  IQDHGSPEDRIVNVALVQLAREFEVKIVATNDSHFISCNDVEAHDALLCINTQKLITEDN 235

Query: 245  RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCS-FILQVHAPILPRFIE 297
            R R +   YLK+  EM+ +F D      + EA+ NT+E+A +   +   +  P +P +  
Sbjct: 236  RLRYSGTEYLKSAEEMMQLFRDHLPDEVIKEAIANTLEVAEKVEPYTGILGEPRIPDYPI 295

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                      +  L   A  GL+ RL   A  +      YR+RL++EL ++ +M F+ YF
Sbjct: 296  PPN----HTADTYLEEIAWEGLKKRL--NAQGRSEIKPVYRERLEYELKMMQKMGFATYF 349

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+V D+I+ A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD
Sbjct: 350  LVVWDYIKHARDNHIPVGPGRGSAAGSLVAYALQITNIDPVHHGLLFERFLNPERKSMPD 409

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D DFC DRRDE+I+YV +KYG E+VAQIITF  + +KA L+DV R L +PYS+ D++ K
Sbjct: 410  IDTDFCIDRRDEMIKYVTSKYGEEKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAK 469

Query: 478  LIPNDPAHPVSLQAIADD----SRFREARLAD--------------PSVDRLLEISQKLE 519
            +IP     P  L+ +  D      F++A   D               +V + ++++ ++E
Sbjct: 470  MIPVSRGKPTKLKVMISDQSPSPEFKQAYDNDFVPIKNDAGEEVGTIAVRQWVDMAIRIE 529

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G  +    HAAG+VI  +PL ++VP+ R+      +TQ+ M+ IE  GL+K DFLGLK L
Sbjct: 530  GTNKTFGVHAAGVVISKQPLDEIVPLQRN-NDGSVITQYFMEDIESLGLLKMDFLGLKNL 588

Query: 580  TLLQKSLDFLAQRG--------------VKVDL------SLIPFDDHETYHLLTTKGTLG 619
            T++Q++L++++Q                  +D+        +P D  +TY +L      G
Sbjct: 589  TIIQRTLNYISQNHHLDIDPYNLAAEERKAMDILAKGSVKKMPEDVAKTYKILERGDLEG 648

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL 677
            +FQLESSGMRQ ++ ++P  IEDI ++++LYRPGP+D   I  + NRK+ +E I   H L
Sbjct: 649  LFQLESSGMRQIVKDLKPSSIEDISSILALYRPGPLDAGLIPQFINRKHKREPIRYEHKL 708

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++P+L ET G+++YQEQ+M++AQ L+GYSL +AD+LRRAMGKK   EM K +E FI GA+
Sbjct: 709  LEPILNETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKASEMQKHRETFIDGAT 768

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            +NG+ + IA ++F+ + KFA+Y FNKSH+ AY  I+YQTA++K +YP E++AA +T    
Sbjct: 769  RNGVPQNIAEHLFDQMVKFAEYCFNKSHSTAYGYITYQTAYLKANYPTEYMAALLTENSG 828

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
            N +K+K + +  +   I ++PP +N   VDF   +NRI + L+AIK VG     H++   
Sbjct: 829  NTDKVKAYIESCKHLGIDVVPPDINRSNVDFTPIENRIVFGLSAIKNVGDGAIEHLLSVR 888

Query: 858  AD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
             +  PF SL D C R++ + +N R LESL+ +GA D    +R Q ++ L+ +  +AQ   
Sbjct: 889  EEGGPFRSLADLCDRINLQMVNSRALESLIKSGAFDSLHANRKQSIEYLNIVIPWAQDRA 948

Query: 917  KNRTNKHENIFAH------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            KNR     N+F        E  + S + T  K        + + E+ +LGFY S HPL  
Sbjct: 949  KNREIGQTNLFDLVNYANTESNSPSGEPTFPKSDDYAPKDKLQFEKELLGFYVSDHPLKS 1008

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                         ++         +++AA +++ +   T+KG R+ ++   +   + +A 
Sbjct: 1009 LLDSGVLPDNVTVDKLSEQKSKAAVKVAATLINIKPHLTKKGDRMAFLLLEDLTGQIDAV 1068

Query: 1031 FFP 1033
             FP
Sbjct: 1069 VFP 1071


>gi|94501921|ref|ZP_01308431.1| DNA polymerase III, alpha subunit [Oceanobacter sp. RED65]
 gi|94425974|gb|EAT10972.1| DNA polymerase III, alpha subunit [Oceanobacter sp. RED65]
          Length = 1164

 Score = 1044 bits (2699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1051 (38%), Positives = 597/1051 (56%), Gaps = 41/1051 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  + SFVHL+VH+ YSL++G + +  ++    ADQQ A+ I+D +N+F+ ++F     A
Sbjct: 1    MSNNNSFVHLRVHTEYSLVDGIVRVKELIKAADADQQIALTISDQSNMFALVKFYTACQA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PII   + I+  D++              +I L+     GY+ L ELVS  +  +Q
Sbjct: 61   TGIKPIISADVFIENPDDM----------ANPYAITLIAQNDVGYRNLTELVSAGFTKNQ 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 ++   W +E    GLI L+G   G I+ A   +  ++A  RL  + +LF  R Y+
Sbjct: 111  HHDRAQLKQEWFEEKAD-GLIALSGFQRGDIEEALKKDKFELAASRLDRWLELFPQRFYL 169

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR  R  D     + ++LA   ++P+VATN+  F+ ++D++AH+  + +     +   
Sbjct: 170  ELQRTQRPNDEALLQKSIKLAADKQVPVVATNDVRFMKQDDFDAHEARVCIGEGMTLIDP 229

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R +   Y K + +M  +F D+P A+ N+VEIA RC+  + +    LP +   +   
Sbjct: 230  RRERRYSDQQYFKTQQQMCELFEDIPSAITNSVEIATRCNVQVLLGKYFLPEYPIPDG-- 287

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFL 358
                E    +  +  GLE RL           ++ R+    RLDFEL++I +M F GYFL
Sbjct: 288  --LTENEFFKKISYEGLEERLEFLIDKNDPQYEEVRKAYFDRLDFELDIIIQMGFPGYFL 345

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFIQWAK ++IPVGPGRGSGAGS+ AYA  ITDIDPL + LLFERFLNP+R+SMPDF
Sbjct: 346  IVMDFIQWAKDHDIPVGPGRGSGAGSLVAYAQKITDIDPLEYDLLFERFLNPERVSMPDF 405

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC ++RD VI YV + YG E V+QI+T+G++ AKA +RDV R     Y   D+L KL
Sbjct: 406  DIDFCMEKRDRVISYVADNYGREAVSQIVTYGTMAAKAVVRDVARVQGKSYGLADKLSKL 465

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   +  +A+ ++    E   +D     + E++QKLEG+ R    HA G+VI    
Sbjct: 466  IPGDPGMTL-AKALDEEPALGEFIDSDEEAQEIWEMAQKLEGITRQTGKHAGGVVIAPTK 524

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRG 593
            L+   P   +      VTQF+   +E AGL+KFDFLGL+TLT++  +L+ +         
Sbjct: 525  LTDFSPTLCEEDGTGLVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALNTINDIRAKNNE 584

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              + +  IP DD  +Y LL    T  +FQLES GM+  +  ++PD IE++IALV+L+RPG
Sbjct: 585  EPLRIEEIPLDDAPSYKLLKEAKTTAVFQLESRGMKDLIRRLEPDNIEEMIALVALFRPG 644

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+++ +V  + NRK+G+ ++   HP      +  +L+ T GVI+YQEQVMQIAQ+L+GY+
Sbjct: 645  PLESGMVDDFINRKHGRAEVAYPHPDYQHESLKEILEPTYGVIVYQEQVMQIAQVLAGYT 704

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+E F  GA+  G    +A+ IF+L+ KFA YGFNKSH+
Sbjct: 705  LGGADMLRRAMGKKKPEEMAKQRETFREGAASIGNDPDLAMKIFDLVEKFAGYGFNKSHS 764

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYAV+SYQT W+KTHYP  F+AA +T +M N +K+  F ++ R+  + ++ P VN    
Sbjct: 765  AAYAVVSYQTLWLKTHYPAPFMAAVLTSDMQNTDKVVIFIEECREMGLDLVLPDVNESEY 824

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLES 884
             F V D   I Y L A+KGVG      I+ A  +  PF  L  FC  VD  K+N+RVLE+
Sbjct: 825  GFTVNDSGAIVYGLGAVKGVGEGPIEAIITARKEKGPFTDLFHFCKSVDKSKINKRVLEA 884

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE--- 941
            LV  GA D  G +R  L  S+++  K A    KN      ++F   +   +     E   
Sbjct: 885  LVRCGAFDKIGPNRSVLFASIEDALKAADQSAKNAAAGMMDMFGVVEEEANINPYDEYKN 944

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            K        + + E+  LG Y +GHP D Y+  L+ +         A       ++A +V
Sbjct: 945  KVRDWTPKQKLKGEKDTLGLYVTGHPFDEYETELKNIARTRLANIQA--DKKPQKIAGIV 1002

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V ++  KT++G  +  VT  +     +   F
Sbjct: 1003 VDQRVMKTKRGGNMAIVTIDDRTARMDVRLF 1033


>gi|240949503|ref|ZP_04753843.1| DNA polymerase III subunit alpha [Actinobacillus minor NM305]
 gi|240296076|gb|EER46737.1| DNA polymerase III subunit alpha [Actinobacillus minor NM305]
          Length = 1142

 Score = 1043 bits (2698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1031 (39%), Positives = 596/1031 (57%), Gaps = 38/1031 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            ++ G   + +++    AD   A+A+TD  N    ++F  ++ ++G++PIIG  + +  + 
Sbjct: 1    MINGLAKVKSLVKTAVADNMVAMALTDFTNFCGLVKFYGESLSSGLKPIIGADILVRPEP 60

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
              +           V  + LL    +GY  +  L+S  Y          +  +WL E   
Sbjct: 61   ESE----------EVYELTLLAKNNQGYHNITLLLSMAYQQGYV-DLPLVEKAWLAEY-N 108

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQV 200
            EG+I+L+GG SG + +A    + + AE     +++ F +  Y ++ R    D  R  S V
Sbjct: 109  EGIIVLSGGRSGDVGKALLKENVKEAENLTAFYQQYFPNHFYFSICRTGRADEERYISAV 168

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V  A    +P+VA N+ +FL E+D+EAH++ +A+  S  +    R +  +P  Y ++  E
Sbjct: 169  VPFANQKGIPIVAVNDVVFLKEDDFEAHEIRVAIHDSYTLDDPKRLKKYSPQQYFRSEEE 228

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+DLP ALENT+EIA+RCS  +++    LP F   +        E  L  K+  GL
Sbjct: 229  MCRLFADLPSALENTIEIAKRCSVTVRLGEYFLPNFPTGDL-----TTEAFLIKKSEEGL 283

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +    + Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGP
Sbjct: 284  EERLAFLFPDPEERASKREVYDKRLKVELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 343

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D RD VI +V  
Sbjct: 344  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDHVAE 403

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLIP DP   +  +A A + 
Sbjct: 404  TYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPGMTLE-KAFAAEP 462

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   +D  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 463  KLTELYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDSEGLHPVT 522

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611
             F+   +E AGL+KFDFLGL+TLT+++ +L+ +  R        V +  IP +D +++ L
Sbjct: 523  HFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINARLTAEGKEPVRIESIPLNDKKSFDL 582

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            L    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+++ +   + +RK+GKE
Sbjct: 583  LLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGKE 642

Query: 670  KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++        H  + P+L+ T GVI+YQEQVMQIAQ L+GY+L  AD+LRRAMGKK  EE
Sbjct: 643  EVSYPDAQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEE 702

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M  Q+E F  GA    I   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 703  MAAQREIFEKGAIDKNIDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 762

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
             EF+AA M+ EMDN +KI     +     + ++PP +N+    F V +     Y L AIK
Sbjct: 763  AEFMAAVMSSEMDNTDKIVGLYDECINMGLTVVPPDINSGKHHFSVNEKGEIVYGLGAIK 822

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA   +  F  L D  +RVD KK+NRR  ++L+ +G+LD  G  R  L+
Sbjct: 823  GVGEGPIDAILEARQKEGIFKDLFDLTARVDLKKINRRTFDALIMSGSLDKLGPHRAALM 882

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGF 961
            ++L++  K +    K       ++F     T  + +         +  V  + E+  LG 
Sbjct: 883  KNLEDALKASDQHTKMEALGQSDMFGVLTETPEEVQNAYANTPKWSEQVVLDGERATLGL 942

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y SGHP+  +   L         E   T RG  + +A +V+S +   T++GSRIG  T  
Sbjct: 943  YLSGHPIGRFLKELAHYAPVRLNELQPTYRGQMVTVAGIVMSYRVAVTKRGSRIGIATIE 1002

Query: 1022 EPAKEYEANFF 1032
            + + + +   F
Sbjct: 1003 DRSGKLDITLF 1013


>gi|312880004|ref|ZP_07739804.1| DNA polymerase III, alpha subunit [Aminomonas paucivorans DSM 12260]
 gi|310783295|gb|EFQ23693.1| DNA polymerase III, alpha subunit [Aminomonas paucivorans DSM 12260]
          Length = 1136

 Score = 1043 bits (2698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1036 (38%), Positives = 590/1036 (56%), Gaps = 32/1036 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  F+HL VHS YSLL+GA+    +++  ++    A+A+TD   ++   EF +K+  AGI
Sbjct: 2    SEPFIHLHVHSEYSLLDGAIRCTELVETASSMGMNAVALTDHGVMYGCEEFFEKSEKAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI GC++ +D         +GK        +VL      GY+ L++LVS          
Sbjct: 62   KPIFGCEVYVDPSGIDNREGKGKN-----HHLVLWAENETGYRNLVKLVSLANTEG-FYY 115

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNL 186
              RI    L     EGLI  +   +G I         + A  R   ++ + G+ R Y+ +
Sbjct: 116  KPRIDHHLLAR-HAEGLIGSSACLAGEIPSLILSGDYEAARDRAFLYRDILGEGRFYLEV 174

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              +   ++     ++V+LA + + PLVATN++ +L   D   HDVL+ V   + V   DR
Sbjct: 175  MHNALREQALANRELVRLARSEDFPLVATNDAHYLRRSDASWHDVLLCVQTQSTVQTTDR 234

Query: 246  PRVTPDH-YLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R   D  Y ++  EM S+F ++LP+AL NT EIA RC+  L +   +LP F   E    
Sbjct: 235  YRFGADDFYFRSPEEMWSLFGAELPDALRNTQEIADRCNVKLTLGKYLLPEFPIPEG--- 291

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +  E  L  +A  GL  RL    I      + Y +RL +EL VI +M F GYF IVAD 
Sbjct: 292  -QTLETFLEKRAWEGLARRLGTQEI-----PEAYGERLRYELGVIRQMGFPGYFCIVADI 345

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I  AK   IPVGPGRGS AGS+ A+AL IT++DPLR+ LLFERFLNP+R+SMPD D D  
Sbjct: 346  ITAAKGQGIPVGPGRGSAAGSLVAWALGITELDPLRYHLLFERFLNPERISMPDIDTDIS 405

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RRDEV+ Y+  KYG +RV+QIITF  +++KAA+RDVGRAL MPYS VDR+ KL+P   
Sbjct: 406  DKRRDEVLAYIVQKYGADRVSQIITFDRMKSKAAIRDVGRALAMPYSDVDRVAKLVPE-- 463

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                  +A+      ++    D  V +L+E +  +EG+ RH S HAAG+VI   PL ++V
Sbjct: 464  GVKTLGEALEKAPDLKQLSDQDLQVRQLIETASHIEGIARHCSQHAAGVVITPVPLVEMV 523

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
            P+ R +  +  VTQ++M+ IE  GL+K DFLGL+TL++L+ +L  + A     +DLS IP
Sbjct: 524  PV-RRIGENQVVTQYSMEPIEHLGLVKMDFLGLRTLSVLEDTLSNIVANHKPPLDLSAIP 582

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD ET+ +L    TLG+FQLESSGM+  L  ++PDC ED+IA+++LYRPGP+ + +V  
Sbjct: 583  MDDPETFDMLQRADTLGVFQLESSGMQDLLRRLRPDCFEDLIAVLALYRPGPLGSGMVED 642

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  RK+G+      HP ++  LKET GVI+YQEQVMQ A  L+GYSL EAD+LRRAMGKK
Sbjct: 643  YIERKHGRAVTQYPHPCLEKALKETYGVILYQEQVMQCAAELAGYSLGEADLLRRAMGKK 702

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              + M+KQ+ +F+ GA + G+    A  IF+ + KFA+YGFNKSH+AAYA+ISYQTA++K
Sbjct: 703  KADVMEKQRSKFVDGARERGVDPVKAEEIFDSIEKFAEYGFNKSHSAAYALISYQTAYLK 762

Query: 781  THYPVEFLAASMTLEMD-NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
             HY  EFLAA ++  +   ++ + ++ +  R     ++PP VN     F      I + L
Sbjct: 763  AHYGAEFLAAYLSSMVGARMDILGRYIRGVRDLGFPVLPPDVNESKAAFAAVGKVIRFGL 822

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            + +  VG      I++A     PF S  DF  RVD + +NR V+E+L+ AGA D    +R
Sbjct: 823  SGVGKVGEAAVDSILKARSEGGPFASFWDFLIRVDLRAVNRGVVENLIKAGAFDALWPNR 882

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             QLL++L  + +  Q  ++       ++F  E+    D   +E         + + E+  
Sbjct: 883  RQLLENLPTLLEMGQ--KRAERGNQTSLF-LEEQEADDVPPMEPCEDFEVRQKLDFEKEA 939

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            LG Y SGHP +  +  +R        E      R     +  ++V  +++ T++G  +G 
Sbjct: 940  LGLYISGHPFEQIEGRVRPYTTCSLAEVEHWQSRDTPPVVGGLLVGVKERYTKRGDPMGI 999

Query: 1018 VTFSEPAKEYEANFFP 1033
            + F +   + E   FP
Sbjct: 1000 LEFEDTETKLETVCFP 1015


>gi|83814834|ref|YP_445111.1| DNA polymerase III, alpha subunit [Salinibacter ruber DSM 13855]
 gi|294506988|ref|YP_003571046.1| DNA polymerase III, alpha subunit [Salinibacter ruber M8]
 gi|83756228|gb|ABC44341.1| DNA polymerase III, alpha subunit [Salinibacter ruber DSM 13855]
 gi|294343316|emb|CBH24094.1| DNA polymerase III, alpha subunit [Salinibacter ruber M8]
          Length = 1166

 Score = 1043 bits (2698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1056 (36%), Positives = 602/1056 (57%), Gaps = 50/1056 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+F HL  H+ YSLL+GA  ++++++       PA+AITD  NL+   EF   A  + +Q
Sbjct: 2    PNFSHLHCHTQYSLLDGAAGIDHLIESAERRDIPAVAITDHGNLYGVPEFYTTAQKSDVQ 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC+  +        +       PT    VLL     GY+ L++L S  +L       
Sbjct: 62   PIIGCEFYLTP------SGIQDQSDPTRYHQVLLAKNQTGYENLMQLSSTSFLEG-FYYK 114

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI L  L++   EGL+  T    G + +       + A+++   +  +FGD  Y+ +Q 
Sbjct: 115  PRIDLDLLRK-HHEGLVATTCCLQGQVPQMILNQGEEAAQEKFEEYLDIFGDDYYIEIQD 173

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D++  ++ ++Q A  +++ ++ATN+  ++ ++D+EA D+L+ +      +  DR R
Sbjct: 174  HDIDDQHTVNEVLLQWARAYDVEVLATNDVHYVDQQDHEAQDILLCLQTGDDYNDPDRMR 233

Query: 248  VTPDH-YLKNRSEMVSIFSDLPE-----ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             + D  YLK+ + M+   + +PE     AL NT ++A +CSF L +   ++P +   E  
Sbjct: 234  FSNDQFYLKDSAGMMEALTGIPEEFQREALVNTNKVADKCSFDLPMGDLLMPHYPIPEG- 292

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ +  LR+      + R            Q    RL+ EL +IA   +SGYFLIV 
Sbjct: 293  --FEDMDGYLRHLTFERAKERYGD------PLPQTVVDRLNHELGIIADEGYSGYFLIVQ 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF   A++ ++ VGPGRGS AGS  +Y L IT++DPL + LLFERFLNP+R+SMPD DID
Sbjct: 345  DFTDAARELDVRVGPGRGSAAGSCVSYCLGITNVDPLEYDLLFERFLNPERVSMPDIDID 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F    R++VI YV  KYG E V QI+TFG++ AK A+RDV R L +P  + D + K+IP+
Sbjct: 405  FDDRGREKVIDYVVEKYGQENVCQIVTFGTMGAKTAVRDVSRVLDIPLDRADEIAKMIPD 464

Query: 482  DPAHPVSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   +  QA  ++  FR  + A +P V ++++ ++ LEG  RH   HAAG++I    +S
Sbjct: 465  GPGVDLE-QAFDENPDFRALKDANNPEVSKMMQYAEVLEGSVRHTGVHAAGVIIAPGEIS 523

Query: 541  QLVP--MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
              VP  + +    ++  TQ++  W+E+ GL+K DFLGLKTLTL++ +++ +   R V ++
Sbjct: 524  DYVPVSVAKSKGEEVVTTQYDGDWVEEFGLLKMDFLGLKTLTLIEDAVELVEDTRDVDLN 583

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP DD  T+ L     T+ IFQ ES+GMR+ L  ++P  I D+IA+ +LYRPGP++N
Sbjct: 584  IDDIPLDDEATFELFQRGDTVSIFQFESTGMREHLRKLKPTEIGDLIAMNALYRPGPMEN 643

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y  RK+G+E++   HPL++ +L+ T G+ ++QEQVMQ+A+ L+G+SL EAD+LRRAM
Sbjct: 644  IPTYVARKHGQEEVEYPHPLLEDILEPTYGIAVFQEQVMQMARELAGFSLGEADILRRAM 703

Query: 718  GKKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            GKK ++ M KQ+E+FI G  ++N I +  A  +F+++ +FA YGFNKSH+AAY++++Y+T
Sbjct: 704  GKKKEKLMRKQREKFIKGCQAENDIPEDEADELFDIINEFAGYGFNKSHSAAYSLVAYRT 763

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--- 833
            A++K HYP EF+AA+MT EMDN +K+ K  ++AR   ++++PPS+N     F V      
Sbjct: 764  AYLKAHYPPEFMAAAMTNEMDNTDKLSKVLEEARSMGLEVLPPSINRSQSRFTVEQGPDG 823

Query: 834  --RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
              R+ + LAAIK  G      +++A  +  PFDS+ D    VD   +N+R LE+L  AGA
Sbjct: 824  AYRVRFGLAAIKNAGEKAINALIDAREEHGPFDSIFDLTKNVDLGTVNKRTLEALAQAGA 883

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSS 949
            LD     R QL++ +D   +Y Q V+ +R     ++F   + GT + +  L        S
Sbjct: 884  LDDLEGHRAQLMEIMDKAVRYGQKVQHDRMAGQNSLFGNGDAGTEAMQPGLPDVETWAKS 943

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI---------RGNN---IR- 996
             R + E  VLGFY SGHPLD Y+          + E               G N   +R 
Sbjct: 944  QRLKEEHEVLGFYVSGHPLDEYRAEADAFATAHFGEPDQLEQVIEQAAGGDGRNRGPVRT 1003

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               ++    +  T+ G  I + T  +   + E   F
Sbjct: 1004 FCGIITEVDRNTTKSGKPIAFATIEDFTGQGEMVIF 1039


>gi|117926508|ref|YP_867125.1| DNA polymerase III subunit alpha [Magnetococcus sp. MC-1]
 gi|117610264|gb|ABK45719.1| DNA polymerase III, alpha subunit [Magnetococcus sp. MC-1]
          Length = 1195

 Score = 1043 bits (2698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 441/1069 (41%), Positives = 632/1069 (59%), Gaps = 55/1069 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL   + L   +++  + Q PA+A+TD  NLF A++F      AGI+P
Sbjct: 4    SFVHLHLHTGYSLLTSTVRLKQAIERAQSLQMPALALTDQGNLFGAIQFYSGCLKAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G QL +      K     K        ++LL    EG++ L+ L+++ +L D      
Sbjct: 64   LLGAQLYLVPDHTNKEERVDKEVRD---QVILLCRNEEGWKNLMRLIAKGHL-DGSHGLP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-----RLYV 184
            RI L  L++  + GL+ L+ G+ G + R         AE        +FGD       ++
Sbjct: 120  RIDLPLLKQ-HSAGLLALSAGAKGAVGRLLAQERPAEAEAAAAELAAIFGDDGQMPNFHL 178

Query: 185  NLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH      R   Q V LA    LP+VA+ +  ++  ED  A D L  V     + ++
Sbjct: 179  ELQRHGEPGEERLIQQTVVLAQKLNLPIVASCDIHYMDPEDANARDALYCVGAVRTLYEE 238

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            +RPR++  +     +EM   F+DLPEALENT  IA RC+  L++  P+LP F        
Sbjct: 239  NRPRLSDRYAFATPAEMAERFADLPEALENTRRIAMRCNLQLKLGTPMLPDFALPPG--- 295

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAK------GYHAQDYRQRLDFELNVIARMKFSGYF 357
             +  E E+R ++ AGLE RL++  + +          Q Y  RL +EL +I +M F GYF
Sbjct: 296  -QTLEGEMRTQSEAGLEERLSKYVLPRFPAAEHAELRQRYHDRLTYELGIINQMGFPGYF 354

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV+DFI+W K ++IPVGPGRGSGAGS+ A++L+ITD+DP+R++LLFERFLNP+R+SMPD
Sbjct: 355  LIVSDFIKWGKDHHIPVGPGRGSGAGSLVAWSLSITDLDPIRYTLLFERFLNPERVSMPD 414

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC DRR+EVI YVQ KYG +RVAQIITFG++QAKA +RDVGR L+ PY +VD++ K
Sbjct: 415  FDVDFCMDRREEVIGYVQQKYGEDRVAQIITFGTMQAKAVIRDVGRVLEFPYGRVDKIAK 474

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+PN     +  +A+  + R R+    +  V  L+ ++  LEG  R   THAAG+VI + 
Sbjct: 475  LVPNVLGITLK-EALEQEPRLRDMMEDEEEVGHLINLALALEGSPRSCGTHAAGVVISNG 533

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---- 593
            PL+  VP+YRD RS +PVTQFNM  +EKAGL+KFDFLGLKTLT++  +L  +  R     
Sbjct: 534  PLTDTVPLYRDPRSSMPVTQFNMGDVEKAGLVKFDFLGLKTLTVIDNTLKIVNARRAQEG 593

Query: 594  ------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
                  V +D++ I  +D   + LL    T G+FQLESSGMR+ L+ + PD  EDIIALV
Sbjct: 594  ERAEDRVPIDIAAIDIEDERAFRLLMDGRTKGVFQLESSGMREILKKLAPDTFEDIIALV 653

Query: 648  SLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +LYRPGP+ + +V  +  RK+G+  +    P ++P+L+ET GVI+YQEQVM+IAQ+L+GY
Sbjct: 654  ALYRPGPLGSGMVDDFIARKHGRAVVEYPLPQLEPILRETYGVILYQEQVMKIAQVLAGY 713

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL  AD+LRRAMGKK  EEM KQ+  F+ GA    I    A  IF+L+ KFA YGFNKSH
Sbjct: 714  SLGAADLLRRAMGKKKPEEMAKQRSIFMDGAKAQQIDPEKAGYIFDLMEKFAGYGFNKSH 773

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA+ISYQTAW+K HYPV F+AA+++ +++N +K+  F ++    ++Q++PP VN   
Sbjct: 774  SAAYALISYQTAWLKAHYPVAFMAATLSADINNTDKVVNFVRECHDMSVQVLPPDVNRSA 833

Query: 826  VDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNR 879
            V F V      ++ + + LAAIK VG      +++A  +  PF SL D C R +   LNR
Sbjct: 834  VIFSVQPGAGDEDAVRFGLAAIKNVGEAPMAALVKAREEGGPFASLLDLCQRTEGGNLNR 893

Query: 880  RVLESLVFAGALDCFGY-SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            R LE+L+ AGA D  G  +R  LL +L          +K++     N+F  E+   S+  
Sbjct: 894  RTLENLIKAGACDGLGKGNRAALLSALPEALNRGTQHQKDQKLGFMNLFGDEEAENSEST 953

Query: 939  T---LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI----- 990
                L +        R E E+  LGFY S HPL  Y+  +   G+    E          
Sbjct: 954  ANWKLPEVPDWPEEERLEREKEALGFYISSHPLRKYEAEMHDYGLMSLSELREKYGPTSQ 1013

Query: 991  -----RGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G  ++R   +VV ++  +T+KG R+ +VT  +   + E   FP
Sbjct: 1014 EPMGNDGRVSVRFTGVVVERKLHRTKKGDRMLFVTLEDMLGQMEGVVFP 1062


>gi|221199588|ref|ZP_03572632.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2M]
 gi|221205512|ref|ZP_03578527.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2]
 gi|221174350|gb|EEE06782.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2]
 gi|221180873|gb|EEE13276.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2M]
          Length = 1179

 Score = 1043 bits (2698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1042 (39%), Positives = 608/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F ++A + G
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARSKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   VKPIAGCDVWITNPDD----------RDKPSRLLLLVKNKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+   +EGL+ L+G   G I  A    + + A +    + K+F    Y+ L
Sbjct: 112  GRAELDASWLEGELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + Y + + EMV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 232  QKRFTTEQYFRTQDEMVALFADLPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RL         +      Y +RL+FE   I +M F GYFLIVA
Sbjct: 291  ---DDYLIQLSKEGLEKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV++KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKDKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            LS +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LSQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+S+  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMVKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN---- 833
            W+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCIMNNLVVLPPDINQSHYRFEPVAEPDGK 827

Query: 834  ---RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 828  RSRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTVEALIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+          +         +F            L      +   
Sbjct: 888  FDSLNANRAQLLASVP--LAMEAAEQAEANALQAGLF-DMGAESPHAHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   +      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGDL---KEGRDKLVAGIIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MLIALLDDGTGQCEITIF 1022


>gi|284051053|ref|ZP_06381263.1| DNA polymerase III subunit alpha [Arthrospira platensis str. Paraca]
          Length = 1219

 Score = 1043 bits (2698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/1083 (36%), Positives = 614/1083 (56%), Gaps = 72/1083 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  L  ++ +      PAIA+TD   ++ A+E  +   + GI+P
Sbjct: 2    SFVGLHIHSDYSLLDGASQLPQLVSRAVELGMPAIALTDHGVMYGAIELIKICRSKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
            IIG ++ I   D        K         V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62   IIGNEMYILNADVTVQQRGIKK-----YHQVVLAKNTQGYKNLVKLTTISHLKGFQGKGI 116

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L+E   EGLI+ +    G + +A       +A + +  +K++FGD  Y+ 
Sbjct: 117  FARPCINKELLEEYH-EGLIVTSACLGGEVPQAILQRRMDIARQTVEWYKRVFGDDYYLE 175

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR     +VQLA   E+ +VATN+S F+S  D EAHD L+ +    ++++ +
Sbjct: 176  IQDHGSPEDRIVNVALVQLAREFEVKIVATNDSHFISCNDVEAHDALLCINTQKLITEDN 235

Query: 245  RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCS-FILQVHAPILPRFIE 297
            R R +   YLK+  EM+ +F D      + EA+ NT+E+A +   +   +  P +P +  
Sbjct: 236  RLRYSGTEYLKSAEEMMQLFRDHLPDEVIKEAIANTLEVAEKVEPYTGILGEPRIPDYPI 295

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                      +  L   A  GL+ RL   A  +      YR+RL++EL ++ +M F+ YF
Sbjct: 296  PPN----HTADTYLEEIAWEGLKKRL--NAQGRSEIKPVYRERLEYELKMMQKMGFATYF 349

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+V D+I+ A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD
Sbjct: 350  LVVWDYIKHARDNHIPVGPGRGSAAGSLVAYALQITNIDPVHHGLLFERFLNPERKSMPD 409

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D DFC DRRDE+I+YV +KYG E+VAQIITF  + +KA L+DV R L +PYS+ D++ K
Sbjct: 410  IDTDFCIDRRDEMIKYVTSKYGEEKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAK 469

Query: 478  LIPNDPAHPVSLQAIADD----SRFREARLAD--------------PSVDRLLEISQKLE 519
            +IP     P  L+ +  D      F++A   D               +V + ++++ ++E
Sbjct: 470  MIPVSRGKPTKLKVMISDQSPSPEFKQAYDNDFVPIKNDAGEEVGTIAVRQWVDMAIRIE 529

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G  +    HAAG+VI  +PL ++VP+ R+      +TQ+ M+ IE  GL+K DFLGLK L
Sbjct: 530  GTNKTFGVHAAGVVISKQPLDEIVPLQRN-NDGSVITQYFMEDIESLGLLKMDFLGLKNL 588

Query: 580  TLLQKSLDFLAQRGV----KVDLS----------------LIPFDDHETYHLLTTKGTLG 619
            T++Q++L++++Q         DL+                 +P D  +TY +L      G
Sbjct: 589  TIIQRTLNYISQNHHLDIDPYDLAANERKAMDILAKGSVKKMPEDVAKTYKILERGDLEG 648

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL 677
            +FQLESSGMRQ ++ ++P  IEDI ++++LYRPGP+D   I  + NRK+ +E I   H L
Sbjct: 649  LFQLESSGMRQIVKDLKPSSIEDISSILALYRPGPLDAGLIPQFINRKHKREPIRYEHKL 708

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++P+L ET G+++YQEQ+M++AQ L+GYSL +AD+LRRAMGKK   EM K +E FI GA+
Sbjct: 709  LEPILNETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKASEMQKHRETFIDGAT 768

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            +NG+ + IA ++F+ + KFA+Y FNKSH+ AY  I+YQTA++K +YP E++AA +T    
Sbjct: 769  RNGVPQNIAEHLFDQMVKFAEYCFNKSHSTAYGYITYQTAYLKANYPTEYMAALLTENSG 828

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
            N +K+K + +  +   I ++PP +N   VDF   +NRI + L+AIK VG     H++   
Sbjct: 829  NTDKVKAYIESCKHLGIDVVPPDINRSNVDFTPIENRIVFGLSAIKNVGDGAIEHLLSVR 888

Query: 858  AD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
             +  PF SL D C R++ + +N R LESL+ +GA D    +R Q ++ L+ +  +AQ   
Sbjct: 889  EEGGPFRSLADLCDRINLQMVNSRALESLIKSGAFDSLHANRKQSIEYLNIVIPWAQDRA 948

Query: 917  KNRTNKHENIFAH------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            KNR     N+F        E  + S + T  K        + + E+ +LGFY S HPL  
Sbjct: 949  KNREIGQTNLFDLVNYANTESNSPSGEPTFPKSDDYAPKDKLQFEKELLGFYVSDHPLKS 1008

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                         ++         +++AA +++ +   T+KG R+ ++   +   + +A 
Sbjct: 1009 LLDSGVLPDNVTVDKLSEQKSKAAVKVAATLINIKPHLTKKGDRMAFLLLEDLTGQIDAV 1068

Query: 1031 FFP 1033
             FP
Sbjct: 1069 VFP 1071


>gi|329296121|ref|ZP_08253457.1| DNA polymerase III subunit alpha [Plautia stali symbiont]
          Length = 1125

 Score = 1043 bits (2697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1013 (40%), Positives = 596/1013 (58%), Gaps = 38/1013 (3%)

Query: 41   QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
             PAIAITD  NL   + F   A +AGI+PI+G    +                  +  + 
Sbjct: 1    MPAIAITDYTNLCGLVRFYGSAHSAGIKPIVGADFQVA----------SDLMGDELTQLT 50

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            +L +   GYQ L  L+SR Y    G     I   WL E+G   + +L+GG  G + R+  
Sbjct: 51   VLAANNTGYQNLTLLISRAYQRGYGIAGPIIDRDWLLELGEGLI-LLSGGRRGDVGRSLL 109

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLF 219
              ++ +  + L  +++ F +R Y+ L R    D        V+LA    +P+VATN   F
Sbjct: 110  RGNNALVAQCLSFYQQHFPNRYYLELTRTGRPDEEAYLHAAVELAIAESVPVVATNEVCF 169

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            L+EED++AH++ +A+     +    RP   +P  Y+++  EM  +FSD+PEALEN+VEIA
Sbjct: 170  LNEEDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYMRSEGEMCELFSDIPEALENSVEIA 229

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQ 335
            +RC+  +++    LP+F   +        E+ L  K+  GLE RLA        +     
Sbjct: 230  KRCNVTVRLGEYFLPQFPTGDM-----STEDFLVMKSREGLEERLAFLFPDEQVRAKRRP 284

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            +Y +RLD ELNVI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+
Sbjct: 285  EYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDL 344

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V   YG + V+QIITFG++ AK
Sbjct: 345  DPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAEMYGRDAVSQIITFGTMAAK 404

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
            A +RDVGR L  PY  V+R+ KLIP DP   +  +A   + +  E   AD  V  L++++
Sbjct: 405  AVIRDVGRVLGHPYGFVERISKLIPPDPGMTLE-KAFQAEPQLPEIYEADEEVKALIDMA 463

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            +KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLG
Sbjct: 464  RKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDENGQFPVTQFDKNDVEYAGLVKFDFLG 523

Query: 576  LKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            L+TLT++  +L  +  R        ++++ IP DD +++ +L    T  +FQLES GM+ 
Sbjct: 524  LRTLTIIDWALKMINPRREKQGLPPINIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKD 583

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLK 683
             ++ ++PDC ED+IALV+L+RPGP+ + +   + +RK+G+E I        H  + P+L+
Sbjct: 584  LIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLE 643

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EEM KQ+  F  GA K GI+ 
Sbjct: 644  PTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFQDGAEKMGING 703

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT ++DN EK+ 
Sbjct: 704  ELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADIDNTEKVV 763

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP- 861
                +  +  ++++PP +N+    F V D+    Y + AIKGVG      I+EA      
Sbjct: 764  GLVDECWRMGLKVLPPDINSGLYPFHVNDDGEIVYGIGAIKGVGEGPIEAILEARNQGGY 823

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F  L D C+R D+KK+NRRV+E L+ +GA D  G  R  L+ +L N  K A    K    
Sbjct: 824  FKELFDLCARTDTKKINRRVMEKLIMSGAFDRLGPHRAALISALGNALKAADQHAKAEAT 883

Query: 922  KHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-G 979
               ++F    +     + +    +     V+ + E+  LG Y +GHP++ Y   + +  G
Sbjct: 884  GQADMFGVLAEEPEQVEQSYAAITPWPEQVQLDGERETLGLYLTGHPINQYLKEIERYVG 943

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++   T RG     A +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 944  GMRLKDMHPTERGKVTVAAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 996


>gi|238018709|ref|ZP_04599135.1| hypothetical protein VEIDISOL_00553 [Veillonella dispar ATCC 17748]
 gi|237865180|gb|EEP66470.1| hypothetical protein VEIDISOL_00553 [Veillonella dispar ATCC 17748]
          Length = 1135

 Score = 1043 bits (2697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1032 (35%), Positives = 603/1032 (58%), Gaps = 27/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ +SLL+G   L +++ +     QPA+AITD  N+++A+ F ++  + GI+P
Sbjct: 3    PFVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECVSQGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +     L    Q       +  ++LL  T EGY+ L+++VS+           
Sbjct: 63   IIGCEVYVTEGSRLD--KQEGRSRERLKHLILLAETMEGYRNLVKIVSKASTEG-FNYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R     L++  ++G+I L+    G I +    ++ + A++ +  + + +  D  ++ +Q 
Sbjct: 120  RADRDLLRQY-SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQN 178

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +  + + ++++L+  + L +VA+N+  ++ +ED +A D+ + ++     ++ DR +
Sbjct: 179  HGLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLK 238

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  YLK+  EM  +F  +P A+ENT++IA RC+         LP F   E +     
Sbjct: 239  FPNDEFYLKSGDEMAELFGHIPGAMENTLKIADRCNVEFNFDEHHLPHFDVPEGE----T 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  LR      +           G  +++ ++RLD+EL+VI  M F  YFLIV D++++
Sbjct: 295  SKTYLRKVCEREIPRLY-------GETSEELQKRLDYELDVIGTMGFEDYFLIVWDYVRY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++
Sbjct: 348  AREHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEK 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R + I YV  KYG ERV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+    
Sbjct: 408  RGQAIEYVTRKYGQERVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELG-- 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            ++L         +    ADP+V  L +  +KLEG+ R++STHAAG+VI   PL   VP+ 
Sbjct: 466  ITLDKALQGKELKALYEADPNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPVQ 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                    VTQ++   IE+ GL+K DFLGL+TLT++  +L  +   RG+ +DL  IP DD
Sbjct: 526  NANDDGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
                 +LT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +V  + +
Sbjct: 585  KAACDILTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFID 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK + 
Sbjct: 645  RRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKES 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  Q+E FI G+  NGI ++IA  +F+LL  FA YGFNKSH+AAYA I+YQTA++K HY
Sbjct: 705  VLKAQRESFIQGSINNGIEESIANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHY 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              EF+AA+MT  M N++K+  +    ++ N++++ P +N     F V  + I + L  IK
Sbjct: 765  FPEFMAATMTSFMQNMQKLTYYINACKKHNVKVLGPDINYSERSFAVQGDAIRFGLGGIK 824

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      ++        +  + DFC RVD+K +N+R+LESL+  GA+D F  +R QLL
Sbjct: 825  NVGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGAMDGFKENRNQLL 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
               ++ Q      +K+      ++F   + +  D I +      +   + ++E+   GFY
Sbjct: 885  HMYESAQAVGAKEQKDAAMGTMSLFGDIEESV-DFIPVPNVEDLSEDDKLKDEKEYTGFY 943

Query: 963  FSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             +GHPL  Y   L  +  +    E+     G  I    ++ +K  + TR+   +  +   
Sbjct: 944  ITGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKTDRMTRRNEVMSILRIE 1003

Query: 1022 EPAKEYEANFFP 1033
            + +       FP
Sbjct: 1004 DYSGAANVVAFP 1015


>gi|91782537|ref|YP_557743.1| DNA polymerase III subunit alpha [Burkholderia xenovorans LB400]
 gi|91686491|gb|ABE29691.1| DNA polymerase III, alpha subunit [Burkholderia xenovorans LB400]
          Length = 1193

 Score = 1043 bits (2697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1042 (38%), Positives = 606/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++++   A D Q A+A+TD  N F  + F ++A   G
Sbjct: 5    SDPRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKG 64

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI GC + I   D+ +              ++LLV    GY  L EL+S+  L +Q +
Sbjct: 65   VKPIAGCDVWITNPDDREK----------PSRLLLLVKDRRGYLNLCELLSKASLTNQYR 114

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL+    EGL+ L+G   G I  A    + + A++  L + K+F    Y+ +
Sbjct: 115  GRAEIEAGWLESGLGEGLLALSGAQQGDIGLALAAGNEEAAKRNALHWAKVFPGGFYIEV 174

Query: 187  Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q   +    +   Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++   R
Sbjct: 175  QRCGQPGGEHYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRR 234

Query: 246  -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R TP+ Y + + EM ++F+D+P AL N+VEIA+RC+  L++  P LP F   +   + 
Sbjct: 235  SKRFTPEQYFRTQEEMAALFADIPSALTNSVEIAKRCNLTLELGKPKLPLFPTPDGMSL- 293

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L + +  GLE RL Q       +      Y +RL+FE   I +M F GYFLIVA
Sbjct: 294  ---DDYLVHLSKEGLEKRLEQLYPDEAERAAQRATYYERLEFECGTIIKMGFPGYFLIVA 350

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 351  DFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDID 410

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 411  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPF 470

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LLE++Q++EGL R+   HA G++I    L+
Sbjct: 471  KPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLT 530

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 531  DFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWS 590

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPGP+D 
Sbjct: 591  LAQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDL 650

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 651  IPSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 710

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM + +E F  GA+KNG++   A  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 711  GKKKAEEMAQHRELFRQGAAKNGLTGEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 770

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN---- 833
            W+K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP VN     F+        
Sbjct: 771  WLKAHHPAEFMAANMSLAMDDTDKVKILFEDCLVNKMAVLPPDVNLSAYRFEPVAEPDGK 830

Query: 834  ---RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                I Y L AIKG G      I+ A  + PF  + DFC+RVD + +NRR +E+L+ AGA
Sbjct: 831  RSRTIRYGLGAIKGSGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALIRAGA 890

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QL+ S+    + A+    N       +F       S    L          
Sbjct: 891  FDSLHANRAQLIASVSLAMEAAEQASANAL--QAGLF-DMGDAPSQGHELVDEPEWPEKK 947

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            + + E+  LGFY SGH  D YK  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 948  KLQEEKAALGFYLSGHLFDAYKDEVRRFVRQKIGEL---KEGRDKLVAGVIASLRTQMTQ 1004

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1005 RGK-MLIALLDDGTGQCEVTVF 1025


>gi|160893094|ref|ZP_02073882.1| hypothetical protein CLOL250_00640 [Clostridium sp. L2-50]
 gi|156865177|gb|EDO58608.1| hypothetical protein CLOL250_00640 [Clostridium sp. L2-50]
          Length = 1183

 Score = 1043 bits (2697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1047 (35%), Positives = 578/1047 (55%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL VH+ YSLL+G+  + +++ +       ++AITD   ++  ++F + A A GI+P
Sbjct: 2    DFTHLHVHTEYSLLDGSAKIKSLVKRAKELGYDSLAITDHGVMYGVIDFYEAARAEGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +         N           +VLL    +GY+ L ++VSR +         
Sbjct: 62   IIGCEIYVSPGSRFDRENTRGE--ERYYHLVLLAENNQGYKNLSKIVSRGFTEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+ +  L++   EG+I L+   +G +      N+ + A++  L   K+F  +  ++ +Q 
Sbjct: 119  RVDMEVLEQYH-EGIIALSACLAGEVAVNLRKNNYEEAKEAALRHLKIFGENNYFLEMQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++    + V++L+    +P+V TN+S ++  ED+EAHDVL+ +  +  V  +DR R
Sbjct: 178  HGLAEQATVNAGVMRLSKELGIPMVVTNDSHYILAEDWEAHDVLLCIQTNRKVHDEDRMR 237

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             T   +YLK++ EM  +F    EAL NT +IA RC+  +      +P F   +       
Sbjct: 238  YTGGQYYLKSKEEMYKLFPYAKEALANTQKIADRCNVEIVFGEQKVPEFDVPDG----LT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E  L    + G+  R             +  +RL +E+N I +M +  YFLIV+DFI++
Sbjct: 294  AEEYLEKLCMEGIRKRY-------NPVTPELMERLTYEINTIKKMGYVDYFLIVSDFIRY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + I VGPGRGS AGS+ AY L IT+IDP+R++LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  AKDHGIAVGPGRGSAAGSIVAYCLEITNIDPIRYNLLFERFLNPERVSMPDIDVDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG E+V QI+TF ++ A+  +RDVGRAL +PY+  D + K IP +    
Sbjct: 407  RQEVIDYVVRKYGKEKVVQIVTFQTMAARNVIRDVGRALDLPYALCDSVAKTIPMEIGMN 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A+      +E    +  V +L+++++KLEGL R+   HAAG+VIG   + + VP+ 
Sbjct: 467  IDT-ALKVSKELKEMYEGNADVKQLIDMARKLEGLPRNTGMHAAGVVIGRDSIDEYVPLA 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            R    D  +TQF M  IE+ GL+K DFLGL+TLT++Q ++ F+ Q   V +D+  I +DD
Sbjct: 526  RG-GDDSIITQFTMTTIERLGLLKMDFLGLRTLTVIQDAVKFIKQETGVDIDIDHIDYDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             + + L+T+  T GIFQLESSGM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y N K
Sbjct: 585  KKVFELITSGKTEGIFQLESSGMKSFMKELKPQSLEDVIAGISLYRPGPMDFIPNYINGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
               EKI    P +  +L+ T G I+YQEQVMQI   L+GY+L  +D++RRAM KK  + M
Sbjct: 645  EHPEKITYDVPELQEILEPTYGCIVYQEQVMQIVMKLAGYTLGRSDLVRRAMSKKKADVM 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K+++ F+         G    GI +  A  IF+ +  FA Y FNKSHAAAYAV++YQTA
Sbjct: 705  AKERQYFVYGNEELGVPGCIARGIPEATANKIFDDMTDFAKYAFNKSHAAAYAVVAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YPVEF+AA M+   DN  K+  + Q  RQ  I+I+PP +N     F      I Y
Sbjct: 765  FLKCYYPVEFMAALMSSVKDNSSKVAGYIQSCRQMGIRILPPDINEGYSGFSAAKGAIRY 824

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             ++ IK VG+     I+E   A+ P+  ++DF  R+  K+ N++ +E+L+  GA D FG 
Sbjct: 825  GMSGIKSVGSAVVDRIVEEREANGPYKDMKDFLVRMTPKETNKKTVEALILGGAFDSFGV 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKFSVENSSVRFEN 954
             R Q++ +   +        KN +    +   F   +   + K         +   +   
Sbjct: 885  KRRQMMMAYPMMIDEVYKERKNLSAGQMSFAEFFGGEFAEAAKTKFPDVEEYDEQEKLAL 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL--------AAMVVSKQQ 1006
            E+ VLG Y SGHPL  Y+ ++ +       + +        R+          MV     
Sbjct: 945  EKSVLGIYISGHPLLDYEKLMSEKTAFSSVDFMIDEEEGRARVQDQSICILGGMVADVTV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + +VT  +   + E   FP
Sbjct: 1005 KMTKNNQNMAFVTLEDMVGQTEIIVFP 1031


>gi|116619157|ref|YP_821313.1| DNA polymerase III subunit alpha [Candidatus Solibacter usitatus
            Ellin6076]
 gi|116222319|gb|ABJ81028.1| DNA polymerase III, alpha subunit [Candidatus Solibacter usitatus
            Ellin6076]
          Length = 1151

 Score = 1043 bits (2697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/1036 (38%), Positives = 600/1036 (57%), Gaps = 26/1036 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YSLL+GA  ++ ++  +   + PA+A+TD  NLF A++F   A A+GI P
Sbjct: 2    SFVHLHCHTDYSLLDGACDIDQLMKIMVEQKMPAVAMTDHGNLFGAVKFYNAAKASGIHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ +  + + + TN  +        +VLL    +GY+ LI+LVS  YL        
Sbjct: 62   VIGCEVYVSQKGHKERTNTDR-----YNHLVLLCENQQGYKNLIKLVSTSYLEG-FYYKP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI L  L +  +EGLI ++    G I      +    A +    +  +F     ++ +Q 
Sbjct: 116  RIDLDLLSQ-HSEGLIGMSACLRGHIPETILNDKYDDARRMAHQYGDIFGAKNFFLEIQD 174

Query: 189  HRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
            H      R + ++V+L+     PLVATN+S +L ++D  AH++LM +      +  +R  
Sbjct: 175  HHLEQDKRLTPELVRLSSETGFPLVATNDSHYLRKDDARAHEILMCIQTGKSFNDPNRMR 234

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              TPD YLK R EM+ +F +L  +L+ T EIA+RC   L+      PRF        +  
Sbjct: 235  WSTPDFYLKTREEMMQLFGELEHSLDRTWEIAQRCHVKLEKVLDPFPRFDIP----TEHT 290

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHA-----QDYRQRLDFELNVIARMKFSGYFLIVA 361
             +      A  G E R  +    K         ++Y +RLD E+ +I  MKFSGYFL+V 
Sbjct: 291  TDTYFEYVARMGFEKRRGRLEAMKAKGTLKHDLEEYAERLDREIKMIQNMKFSGYFLVVW 350

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++AK   IPVGPGRGS AGS+ +YA+ ITDIDPL++ LLFERFLNP+R+S PD D+D
Sbjct: 351  DFIRYAKDQGIPVGPGRGSAAGSLVSYAMEITDIDPLQYGLLFERFLNPERVSFPDVDVD 410

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR EVI+YV  KYG E+VAQIITF +L A+AA++DVGR L+MP  +V+RL KL+P 
Sbjct: 411  FCMNRRGEVIQYVTQKYGREQVAQIITFNTLGARAAIKDVGRVLEMPLPEVERLTKLVPA 470

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  +AI  +  F+EA   DP  D +L+++ +LEGL R+ S HAAG+VI   PL  
Sbjct: 471  TLNISLQ-EAIDQEPGFKEAARKDPRCDDVLKVALRLEGLSRNCSVHAAGVVISPLPLQD 529

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
            LVP+Y+  R +  VTQF+M  +EK  L+K DFLGL TLTL+Q +L  + +R  V +    
Sbjct: 530  LVPLYKTNRDE-IVTQFDMGGLEKLQLLKMDFLGLTTLTLIQDALRLIKKRHGVTIVPED 588

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +     T G+FQ ESSGMR  L   QP  +ED+ AL +LYRPGPI   +V
Sbjct: 589  LPLDDKGTYEVFCKGITSGVFQFESSGMRDILRRYQPSRLEDLTALNALYRPGPIQGGMV 648

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK G++ +    P +  +L+ET GVI+YQEQVMQI+  ++GYSL +AD+LRRAMG
Sbjct: 649  DDFIERKWGRKAVQYDLPELQVLLEETYGVIVYQEQVMQISNRIAGYSLGDADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM KQ+ERF+ GA + G ++     IF+L+ +FA YGFNKSH+AAYA +++ TA+
Sbjct: 709  KKKLEEMVKQRERFVKGALERGFNQKKVEKIFDLMEQFAGYGFNKSHSAAYAYLAFVTAY 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K HYPV+F+AA +T E  N  K+ K+  + R+  I+I+PP VN     F    + I + 
Sbjct: 769  LKAHYPVDFMAALLTSETGNTAKVVKYINECREMGIKILPPDVNHSEWSFTPDGDAIRFG 828

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            + AIK VG +    I +  A+   F SL +FC +VD   +NRR++ESL+ AGA+D    +
Sbjct: 829  MGAIKNVGQSAVEAIGKTRAEVGKFPSLHEFCEKVDLGAVNRRMIESLIRAGAMDSLEGT 888

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENEQ 956
            R Q   +++   +     +++R +    +F             L      +   +   E+
Sbjct: 889  RSQKFAAVEGAMEAGARAQRDRESGQVGLFGEVIAADEPHSAPLPNIPDWSEKEKLAGEK 948

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             +LGF+ +GHP+D Y   + ++            + + + +  ++    +K+ R+G    
Sbjct: 949  ELLGFWVTGHPMDRYMEKVAELANADTSSLEGLAKNHEVAICGVLTGIARKRNREGKPWC 1008

Query: 1017 WVTFSEPAKEYEANFF 1032
             +T  + A   EA  F
Sbjct: 1009 AMTLEDRAGSVEALLF 1024


>gi|161524140|ref|YP_001579152.1| DNA polymerase III subunit alpha [Burkholderia multivorans ATCC
            17616]
 gi|189351103|ref|YP_001946731.1| DNA polymerase III subunit alpha [Burkholderia multivorans ATCC
            17616]
 gi|160341569|gb|ABX14655.1| DNA polymerase III, alpha subunit [Burkholderia multivorans ATCC
            17616]
 gi|189335125|dbj|BAG44195.1| DNA polymerase III alpha subunit [Burkholderia multivorans ATCC
            17616]
          Length = 1179

 Score = 1043 bits (2697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1042 (39%), Positives = 608/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F ++A + G
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARSKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   VKPIAGCDVWITNPDD----------RDKPSRLLLLVKNKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+   +EGL+ L+G   G I  A    + + A +    + K+F    Y+ L
Sbjct: 112  GRAELDASWLEGELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + Y + + EMV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 232  QKRFTTEQYFRTQDEMVALFADLPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RL         +      Y +RL+FE   I +M F GYFLIVA
Sbjct: 291  ---DDYLIQLSKEGLEKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV++KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKDKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            LS +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LSQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+S+  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMVKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN---- 833
            W+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCIMNNLVVLPPDINQSHYRFEPVAEPDGK 827

Query: 834  ---RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 828  RSRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTVEALIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+          +         +F            L      +   
Sbjct: 888  FDSLNANRAQLLASV--TLAMEAAEQAEANALQAGLF-DMGAESPHAHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGEL---KEGRDKLVAGIIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MLIALLDDGTGQCEITIF 1022


>gi|302873297|ref|YP_003841930.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
 gi|307688537|ref|ZP_07630983.1| DNA polymerase III DnaE [Clostridium cellulovorans 743B]
 gi|302576154|gb|ADL50166.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
          Length = 1204

 Score = 1043 bits (2697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1059 (35%), Positives = 596/1059 (56%), Gaps = 52/1059 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VH+ YSLL+G+  ++ ++ +       A+AITD   ++  +EF + A   GI
Sbjct: 2    SRDFVHLHVHTGYSLLDGSGKISLMVKRAKELGMNAMAITDHGVMYGCVEFYKAAKEVGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+G ++ +  +  + +  QG+        +VLLV  + GY  L+++VS   + D    
Sbjct: 62   KPILGSEIYVASKS-MHIKEQGRKND--THHLVLLVKNSTGYDNLMKIVSAASI-DGFYY 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+   +L++  +EGLI L+    G +      ++  +A++  L +K+ F D  Y+ LQ
Sbjct: 118  KPRVDHDFLKK-HSEGLIALSACLGGEVQGHILKSNLDIAKETALFYKETFKDGFYLELQ 176

Query: 188  RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++      ++ ++   ++PLVATN+  ++++ED  AHD+L+ +     + +K R 
Sbjct: 177  NHGMREQIMVNEHLIAMSKELDIPLVATNDIHYINKEDSRAHDILLCIQTGKTIDEKGRM 236

Query: 247  RVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               P+ +  +++ EM  +F  + EAL+NTV+IA +C+F  + H   LP F        ++
Sbjct: 237  SYQPEQFYIRSQEEMEELFGYVEEALDNTVKIAEQCNFDYEFHVSKLPNFPLPS----EQ 292

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +    LR+    GL     +         ++ + RLD+EL++I  M +  YFLIV DFI+
Sbjct: 293  DHFQYLRDTCYKGLAELYEE-------ITEEIKVRLDYELDIIKTMGYVDYFLIVWDFIR 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A +N IP GPGRGS AGS+ A+ L IT IDP+++SLLFERFLNP+R+SMPD D DFC +
Sbjct: 346  FANENGIPTGPGRGSAAGSIVAFTLGITKIDPIKYSLLFERFLNPERVSMPDIDSDFCYE 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV +KYG+E V+QIITFG++ A+  +RDVGRA+   YS+VD + K+IPN    
Sbjct: 406  RRQEVIDYVVDKYGYESVSQIITFGTMAARMCIRDVGRAMNYSYSEVDAIAKMIPNMLGI 465

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+  +S  + A   +  V  L+++S+ LEGL RH STHAAG+VI  +PL   VP+
Sbjct: 466  NIE-RALEVNSELKAAYEENERVRDLIDVSKTLEGLPRHTSTHAAGVVIASQPLVSYVPL 524

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
             +    +  VTQ+ M  +E+ GL+K DFLGL+TLT+L+ ++D + Q + +++DL  I   
Sbjct: 525  QK--NDEAIVTQYTMGTLEELGLLKMDFLGLRTLTVLKDAVDMVKQNKRIEIDLDKIDDA 582

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D + Y ++    T+G+FQLES+GM   ++ ++PD +EDIIA +SLYRPGP+  I  Y   
Sbjct: 583  DPKVYTMVGEGKTVGVFQLESAGMTSFMKDLKPDSLEDIIAGISLYRPGPMAEIPRYIEG 642

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K    KI    P ++P+L  T GV++YQEQVM+I + L+GYS+  +D++RRAM KK  + 
Sbjct: 643  KRNPAKIRYETPELEPILGVTYGVMVYQEQVMEIVRKLAGYSMGRSDLVRRAMSKKKHKV 702

Query: 725  MDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            M+++++ FI             G  +NGIS   A  IF+ +  FA Y FNKSHAAAYAV+
Sbjct: 703  MEEERQNFIYGIVDKDGNIEVPGCLRNGISVEAANKIFDQMMDFASYAFNKSHAAAYAVV 762

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTA+M  +YP EF+AA +   M N EK+  + + A++ +I+++PP +N     F V  
Sbjct: 763  AYQTAYMMCYYPTEFIAAMLNSVMGNNEKVAYYIRFAKEKDIEVLPPHINESYSKFTVNK 822

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             +I + +A+IK VG      I++   +   F    DF  ++D   +N+R  ESL+ +GA 
Sbjct: 823  EKIRFGMASIKNVGGNVTDSIVKVREEKGKFKDFMDFAEKIDVSTVNKRAAESLIKSGAF 882

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI---FAHEKGTFSDKITLEKFSVENS 948
            D FG  R QLL  ++ +       +K       N+   F ++  T   KI   K      
Sbjct: 883  DEFGVYRSQLLAIMEKVLDGVSSQKKRNIQGQLNLFQDFENDDSTMDIKIEYPKIKEFEK 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT--------------IRGNN 994
                  E+ + G Y SGHPLD Y   L  +      E V+                 G+ 
Sbjct: 943  KYILAMEKEMTGLYLSGHPLDEYVQTLNYVTNTNSSEIVSNQLLEGEEQLDNTKIRDGDK 1002

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +   +    +K TR  + + ++   +     E   FP
Sbjct: 1003 VIIGGTIAEISKKITRNNAMMAFLRLEDLYGSVEVIIFP 1041


>gi|90407915|ref|ZP_01216090.1| DNA polymerase III subunit alpha [Psychromonas sp. CNPT3]
 gi|90311006|gb|EAS39116.1| DNA polymerase III subunit alpha [Psychromonas sp. CNPT3]
          Length = 1170

 Score = 1043 bits (2697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1049 (37%), Positives = 584/1049 (55%), Gaps = 38/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VHS +S+++G   +  ++   AA   PAIA+TD  N    ++F   A +
Sbjct: 6    VSHDPKFIHLRVHSDFSMVDGLTKVKALIANTAAMNMPAIALTDQTNFCGLVKFYTAAHS 65

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++P++G    +          Q +        I  L    EGY+ + EL+S+ Y    
Sbjct: 66   AGVKPLVGVDFWV----------QSEILEKEQFRITALAMDNEGYKNITELISKAYFRGH 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  +   WL+E    G+I+L+G   G + +       ++A +    ++  F  R Y+
Sbjct: 116  VGGRAILDQDWLKEY-NHGIILLSGAKEGDLGKMLLKGHFELASEITQFYQTYFPQRYYL 174

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +       ++ A  H+LP+VATN  +F ++  ++AH + + +     +  +
Sbjct: 175  ELIRTGRVKEETYIHHALEWAEKHQLPVVATNQVVFSNKTLFDAHVIRVCINQGYTLGDE 234

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP   + + YL++  EM  +FSD+PEAL+N+VEIA+RC+  L++    LP F  +    
Sbjct: 235  RRPHDYSEEQYLRSPEEMCELFSDIPEALQNSVEIAKRCNVTLRLGECFLPDFPTQ---- 290

Query: 303  IQKEEENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              K   +     +  GL  RL     + +         Y +RL  EL VI  M F GYFL
Sbjct: 291  -GKPINDYFIEVSRQGLNARLEFLFDKNSADFAQIRAPYDERLRIELEVINSMGFPGYFL 349

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL+  LLFERFLNP+R+SMPDF
Sbjct: 350  IVMEFIQWSKDNGIPVGPGRGSGAGSLVAYALNITDLDPLKLDLLFERFLNPERVSMPDF 409

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC +RRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VD + KL
Sbjct: 410  DIDFCMERRDEVIDHVAQLYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDSISKL 469

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +P  P   +S +A  ++ R +E       V  L+++ + LEG  R+A  HA G+VI    
Sbjct: 470  VPPTPGMTLS-KAFEEEPRLQERYDGSEEVRDLIDMCRTLEGTIRNAGKHAGGVVISPTT 528

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG----- 593
            ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++Q +LD           
Sbjct: 529  ITDFAPLYCDDEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWALDMANAHKSDRGE 588

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              +++  I   + + + LL    T  +FQLES GM+  +  +QPD  ED+IALV+L+RPG
Sbjct: 589  EAIEIERISLTEPKCFELLKRYETTSVFQLESRGMKDLIRRLQPDSFEDMIALVALFRPG 648

Query: 654  PIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +   +  RK+G+E +        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+
Sbjct: 649  PLGSGMVDNFIERKHGREAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQILSGYT 708

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA  NGI   +A+ IF+L+ KFA YGFNKSH+
Sbjct: 709  LGGADMLRRAMGKKKPEEMAKQRSTFEQGAINNGIDGELAMKIFDLVEKFAGYGFNKSHS 768

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT WMKT YP  F+AA ++ +MDN +K+     + ++  + + PP VN    
Sbjct: 769  AAYALVSYQTLWMKTFYPAYFMAAVLSADMDNTDKVVILVSECQRMGLNLCPPDVNEGQF 828

Query: 827  DFKVGDN-RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
             F V  N RI Y + A+KGVG      I+EA      F  L DFC+RVD K   +R++E 
Sbjct: 829  KFNVDKNLRIIYGIGAVKGVGEGPINAIIEARTIGGDFRDLFDFCNRVDLKHCGKRIIEK 888

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKF 943
            L+ AGALD  G  R  L+++L      A   ++  +    ++F       +D +    K 
Sbjct: 889  LILAGALDNLGPHRAALMENLPLALASATQHKRAESFGQCDLFGVLTTDSADIENRFSKV 948

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                       E+  LG Y +GHP++ Y+  +R    K   +  +  RG N R+A +++ 
Sbjct: 949  EKWPEKQWLAGEKETLGLYLTGHPINQYEAHIRAFHCKPIVDLSSDRRGQNSRIAGLIIG 1008

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T+ G R+G +T  +     +   F
Sbjct: 1009 LRVMVTKAGKRMGILTVDDRTARIDITIF 1037


>gi|307720929|ref|YP_003892069.1| DNA polymerase III subunit alpha [Sulfurimonas autotrophica DSM
            16294]
 gi|306979022|gb|ADN09057.1| DNA polymerase III, alpha subunit [Sulfurimonas autotrophica DSM
            16294]
          Length = 1204

 Score = 1042 bits (2695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1088 (35%), Positives = 608/1088 (55%), Gaps = 70/1088 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K PSF HL +H+ YSLL+GA  L+N++ ++      ++A+TD  N+F A++F ++   
Sbjct: 1    MSKQPSFTHLHLHTEYSLLDGANKLSNLVSRVKELGMTSVAMTDHGNMFGAIDFYKQMKG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG +  I   + L     G         I L     +GY+ L+ L S+ ++   
Sbjct: 61   AGLKPIIGMEGYIHNGETL-----GDKSTKQRFHICLYAKNKKGYENLMYLSSKAFIEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA-FFFN---------SSQVAEKRLLTF 174
                 RI    L+E  +EGLI  +    G ++      N           + A      +
Sbjct: 115  FYYFPRINKKELRE-HSEGLICTSACLQGEVNWHLNLQNERNVKNGALGYEGALNVAREY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            + +FG+  Y+ L RH   D+ Y + Q+++++    + +VATN++ +   +D + H+  M 
Sbjct: 174  QDIFGNDFYLELMRHGIGDQLYIDEQILKISRETGIKIVATNDTHYTYPDDAQYHEAFMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPI 291
            +  + +    +R R +  + Y+K+  EM  +F+D+PEALE+T EI  +   F+  V  P 
Sbjct: 234  IGMNKLYDDPNRMRHSVHEFYIKSPDEMARLFADIPEALEHTQEITNKIEDFVPIVKTPT 293

Query: 292  LPRF------------------IEKECDDIQKEE------------ENELRNKAVAGLEV 321
             P F                       DD  +EE                  K   GLE 
Sbjct: 294  PPNFKFTQEYAKEEGLDIDYQDDPPLADDASEEEKKKWLSAADKNDAEYFIIKCREGLEK 353

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
            RL      +    Q+YR RL+FE+++I  MKF GY +IV DF++ AK+  + VGPGRGS 
Sbjct: 354  RLKIVPKERH---QEYRDRLEFEMDIINSMKFPGYMMIVWDFVKEAKRIGVAVGPGRGSA 410

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            AGS+ AY+L ITDIDP+++ LLFERFLNP+R+SMPD D+DF Q RR EVI YV  KYG  
Sbjct: 411  AGSLVAYSLEITDIDPMKYDLLFERFLNPERVSMPDIDMDFMQARRGEVIDYVTKKYGRN 470

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ---------AI 492
            +VAQIITFGSL AK  +RDV R L MP S+ D++ KL+P++    ++ +         A 
Sbjct: 471  QVAQIITFGSLLAKGVIRDVARVLDMPLSKADQMAKLVPDELGITLNGKTKNGEFKDGAF 530

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
              + + RE   +DP V R+ E ++KLEGL R+A  HAAG+VI +  L +  P+Y+    D
Sbjct: 531  QKEPKLRELVESDPQVGRVWEFAKKLEGLKRNAGMHAAGVVISNEELWKKTPIYKPSGED 590

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHL 611
              VTQ+++ ++E   LIKFDFLGLKTL ++  ++  + +R    +D   I  +D   Y +
Sbjct: 591  TFVTQYSLNYMEDVDLIKFDFLGLKTLDVIDNAIKLIKRRYDKDIDWHTIDENDKNVYDV 650

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            + T  T+G+FQ+ESSGM+   + ++P   ED+IA+++LYRPGP+++ +   +  RK+G++
Sbjct: 651  IQTGETVGMFQIESSGMQDLNKRLKPSNFEDLIAVLALYRPGPMESGMLDDFIERKHGRQ 710

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +I  +   ++ +LK T GVI+YQEQVMQI Q + G+SL  AD++RRAMGKK  +EM K  
Sbjct: 711  EITYVFEALEEILKPTYGVIVYQEQVMQIVQTIGGFSLGGADIVRRAMGKKKVDEMLKYN 770

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F  GA+K G+    A  +F+L+ KFA YGFNKSH+AAYA++++QTAW+KT+YP EF+A
Sbjct: 771  KEFSEGAAKQGLDYKTASELFDLIEKFAGYGFNKSHSAAYAMVTFQTAWLKTYYPNEFMA 830

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY----YSLAAIKGV 845
            A +T + DN EK+ ++  + ++  I++ PP +    ++F            + L  IKGV
Sbjct: 831  ALLTSDKDNTEKVVRYIDEVKRMGIELSPPDICDSYLEFSAITKENREIILFGLGGIKGV 890

Query: 846  GTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            G       I E   +  + SL+DF +R++  K+N+RV+E+++ +G  D +GYSR  LL  
Sbjct: 891  GEAAIHAMIEEREENGDYASLQDFVNRIEPSKVNKRVVEAIIKSGGFDRYGYSRKALLDQ 950

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            ++ I   A+   + + N   ++F  ++   + ++ L+           E E+  LGFY S
Sbjct: 951  IELIVDTAKKASEAKKNVVGSLFGDDEEITTVRLELKNSDEYELKEILEFEKDTLGFYVS 1010

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            GHP+D ++  L ++      E  +   G+       V   Q+K ++KG++ G V   +  
Sbjct: 1011 GHPMDDFREELDELNYTLSSELESIKDGSFAIFIGKVEEIQKKISKKGNQFGIVNLMDFH 1070

Query: 1025 KEYEANFF 1032
               E   F
Sbjct: 1071 GNIEIMLF 1078


>gi|294084089|ref|YP_003550847.1| DNA polymerase III subunit alpha [Candidatus Puniceispirillum marinum
            IMCC1322]
 gi|292663662|gb|ADE38763.1| DNA polymerase III, alpha subunit [Candidatus Puniceispirillum
            marinum IMCC1322]
          Length = 1153

 Score = 1042 bits (2695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 494/1049 (47%), Positives = 667/1049 (63%), Gaps = 44/1049 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL++H++YSL E  L + N+   ++ D QPA AITDTNN+F ALEFS+     G+QP
Sbjct: 4    NFVHLRLHTAYSLAESTLRIKNLARLVSEDAQPAAAITDTNNMFGALEFSKAMVNVGVQP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G QL+I                     +VLL     GY  L  L+S   L  +   + 
Sbjct: 64   IMGAQLNIT-------------DSQGTGEVVLLAQNETGYVNLSHLLSDALLNSEANANP 110

Query: 130  RICLSWLQEIGTEGLIMLTGG-SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                  L    +EGLI+L+GG   G +          +A+ RL     +   R+Y+ LQR
Sbjct: 111  HCNFDALA-ARSEGLILLSGGVMDGFVGLPASDGRQSLAKSRLQALNTIMQGRVYIELQR 169

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H  G ++  E  +V LA   +LPLVATN+  F S +    HD L+ +     VS+++R +
Sbjct: 170  HGLGAEQVAEPILVALADNLDLPLVATNDCRFDSPKMAGPHDALICIGTGRKVSEENRIK 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +P+HY K+  +M  +F D+PEA+ NTV IA+RCS++    APILP F           E
Sbjct: 230  YSPNHYFKSGKQMTDLFVDIPEAIANTVTIAKRCSYMSPERAPILPAFTAG----TDVTE 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARMKFSGYFLIV 360
            +  L  +A  GL  RL +   +    A         Y+ RL FEL VI +M F GYFLIV
Sbjct: 286  DVALARQAEDGLAHRLERYVYSDDMDAAAKADIAKPYQDRLAFELGVINQMGFPGYFLIV 345

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFIQWAK   IPVGPGRGSGAGSV A+AL+ITD+DPLR+ LLFERFLNP+R+SMPDFDI
Sbjct: 346  ADFIQWAKNAAIPVGPGRGSGAGSVVAWALSITDLDPLRWGLLFERFLNPERVSMPDFDI 405

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQDRRDEVI YVQ KYG +RVAQIITFGSLQA+AALRDVGR L+MPY QVDR+ KLIP
Sbjct: 406  DFCQDRRDEVITYVQEKYGKDRVAQIITFGSLQARAALRDVGRVLEMPYGQVDRIAKLIP 465

Query: 481  NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            N+PA+P ++ QA+  ++  R  R  D  V  L+++S  LEGLYRHASTHAAG+VIGDRPL
Sbjct: 466  NNPANPTTIAQALESEADLRAERNQDEQVADLIDMSLSLEGLYRHASTHAAGLVIGDRPL 525

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            + LVP+YRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ++++F+AQRG++++L 
Sbjct: 526  ADLVPLYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQRAVEFIAQRGIEINLD 585

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +T+ +L+   T+G+FQLES+GMR  L G++PD  EDIIA+V+LYRPGP++NI 
Sbjct: 586  AIPLDDIKTFEMLSAGDTVGVFQLESAGMRDVLRGLKPDRFEDIIAVVALYRPGPMENIP 645

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  RK+   +I  +HP ++P+L ET G++IYQEQV Q AQ+L+GY+L  AD+LRRAMGK
Sbjct: 646  DYVARKHDPSQITYMHPDLEPVLNETYGIMIYQEQVQQAAQVLAGYTLGAADILRRAMGK 705

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KIK EMD Q+  F++GA  N IS+ +A +IF+ +A FA YGFNKSHAAAYA++SYQTA++
Sbjct: 706  KIKAEMDAQRATFVNGAVDNAISEKLASDIFDTIAAFAGYGFNKSHAAAYALVSYQTAYL 765

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------ 833
            K +YPVEFLAASM L+  N EK+  F Q+ +Q  I I PP VN     F+V  +      
Sbjct: 766  KANYPVEFLAASMALDAGNTEKLAVFRQECQQKGITIKPPCVNHSFAGFRVEPDNNHPES 825

Query: 834  -----RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                  I Y+L AIK VG      + E   A   F+ L DF  R+     NRR +E+LV 
Sbjct: 826  DNDKLAIRYALGAIKNVGAEAMARLTEKRDAGSKFEHLMDFLERLPRDASNRRQMENLVR 885

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGALDC   +R +LL ++D +  +A+ + +++ +   N+F  +  + +  + L       
Sbjct: 886  AGALDCLHANRHELLNNIDYLLAHAETLRRDKESNQNNLFGDDTDSMASSLRLTPCEDWV 945

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NNIRLAAMVVS 1003
               R + E   LG Y S HPLD Y   L K+ I    E    I        + LA  +  
Sbjct: 946  PMDRLKEEFDALGLYLSAHPLDGYGNQLAKLRIITASELNRQIEAGRPPQRVNLAGSITG 1005

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            KQ + +++G++  +V F++    +E  FF
Sbjct: 1006 KQVRVSQRGNKFAFVQFTDQTGVFETTFF 1034


>gi|221211665|ref|ZP_03584644.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD1]
 gi|221169026|gb|EEE01494.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD1]
          Length = 1179

 Score = 1042 bits (2695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1042 (39%), Positives = 607/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F ++A + G
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARSKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   VKPIAGCDVWITNPDD----------RDKPSRLLLLVKNKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +   WL+   +EGL+ L+G   G I  A    + + A +    + K+F    Y+ L
Sbjct: 112  GRAELDARWLEGELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + Y + + EMV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 232  QKRFTTEQYFRTQDEMVALFADLPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RL         +      Y +RL+FE   I +M F GYFLIVA
Sbjct: 291  ---DDYLIQLSKEGLEKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV++KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKDKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            LS +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LSQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+S+  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMVKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN---- 833
            W+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCIMNNLVVLPPDINQSHYRFEPVAEPDGK 827

Query: 834  ---RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 828  RSRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTVEALIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+          +         +F            L      +   
Sbjct: 888  FDSLNANRAQLLASVP--LAMEAAEQAEANALQAGLF-DMGAESPHAHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGEL---KEGRDKLVAGIIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MLIALLDDGTGQCEITIF 1022


>gi|224533626|ref|ZP_03674215.1| DNA polymerase III subunit alpha [Borrelia burgdorferi CA-11.2a]
 gi|224513299|gb|EEF83661.1| DNA polymerase III subunit alpha [Borrelia burgdorferi CA-11.2a]
          Length = 1161

 Score = 1042 bits (2694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1036 (38%), Positives = 608/1036 (58%), Gaps = 25/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 15   MSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 74

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +      K   +          ++LL     GY+ L++L S  YL   
Sbjct: 75   AGIKPIIGIEAYMAKTS--KFLKKQDDLGKMSYHLILLAKNELGYKNLLKLTSISYLEG- 131

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 132  FYYRPRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 190

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V  +    +PL A N+S +++ ED  A D+++ +      S +
Sbjct: 191  ELQRHGIKDQDIVNERLVNYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDE 250

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKEC 300
            +R    T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E 
Sbjct: 251  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEF 310

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +       L +  + GL+ R               + R  +EL+VI  M F GYFLIV
Sbjct: 311  NTLG----EYLEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRNVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F     +         + F   + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQAFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|254247600|ref|ZP_04940921.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
 gi|124872376|gb|EAY64092.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
          Length = 1177

 Score = 1041 bits (2693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1042 (39%), Positives = 606/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + +++I+   AAD Q A+A+TD  N F  + F Q+A   G
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWIANPDD----------RDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL     +GL+ L+G   G I  A    + + A +    + ++F    Y+ L
Sbjct: 112  GRAELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAAALAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T D Y + + EM ++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 232  QKRFTTDQYFRTQDEMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRLAQGAI---AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RLAQ       +      Y +RL+FE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSKEGLEARLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L A+KG G      I+ A  +K F  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 828  RSRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QL+ S+    + A   E N       +F            L      +   
Sbjct: 888  FDSLNPNRAQLIASVPLAMEAADQAEANAM--QAGLF-DMGAESPHAHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   +      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKVGDL---KEGRDKLVAGIIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MLIALLDDGTGQCEITIF 1022


>gi|72382105|ref|YP_291460.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str.
            NATL2A]
 gi|72001955|gb|AAZ57757.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str.
            NATL2A]
          Length = 1172

 Score = 1041 bits (2693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1054 (36%), Positives = 594/1054 (56%), Gaps = 42/1054 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV +  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +   AA I+P
Sbjct: 2    AFVPIHNHSDYSLLDGASQLPLMVQRAKELGMPALALTDHGVMYGAIELLKLCKAANIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          + +  +     +V++     GY+ L++L +  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPKKEKRY----HLVVVAKNQIGYENLVKLTTLSHLNGVRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   +L +  +EGLI  T    G I +A     + VA +    +K++ GD  Y+ 
Sbjct: 118  FSRPCIDK-YLFKKYSEGLICSTACLGGEIPQAILKGRNDVAREVAAWYKEVLGDDFYLE 176

Query: 186  LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR   S++V+++   ++ ++ATN++ +LS+ D EAHD L+ V    ++S   
Sbjct: 177  IQDHGSIEDRIVNSEIVKISEELDIKIIATNDAHYLSKNDIEAHDALICVLTGKLISDHK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   Y+K+  EM S+F+D  +      A+ENTV+++ +      +    +P F   
Sbjct: 237  RLRYTGTEYIKSEDEMRSLFTDHLDKNVINSAIENTVKLSNKVEEYKILGTYKMPNFPIP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +      +    L+   + GL   L             Y++RLD+EL VI +M F  YFL
Sbjct: 297  DG----YQPIEYLKEITIKGLLEIL--DISKFENLPITYKERLDYELKVIEQMGFPTYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A++ NIPVGPGRGS AGS+ A++L IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 351  VVWDYIRFAREQNIPVGPGRGSAAGSLVAFSLHITNIDPVENGLLFERFLNPERKSMPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC +RR EVI YV  KYG ++VAQIITF  + +KA L+DV R L +PY   DRL KL
Sbjct: 411  DTDFCIERRGEVIDYVTKKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKL 470

Query: 479  IPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L A+    + +  F E    D  V + ++++ ++EG  +    HAAG+VI
Sbjct: 471  IPVVRGKPAKLAAMISKESPNKDFYEKYNNDSKVKKWVDMAMRIEGTNKTFGVHAAGVVI 530

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
                L  LVP+ R+      +TQ+ M+ IE  GL+K DFLGL+ LT+++K++D + +   
Sbjct: 531  AANSLDNLVPLQRN-NDGQIITQYFMEDIESLGLLKMDFLGLRNLTMIEKTIDLVEKSIG 589

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             ++D   +PF D +T+ LL+     GIFQLESSGMRQ ++ ++P  +EDI ++++LYRPG
Sbjct: 590  KRLDPDSLPFTDEKTFELLSRGDLEGIFQLESSGMRQIVKDLKPSSLEDISSILALYRPG 649

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRK+GKE I   H  ++P+L ET G+++YQEQ+M+IAQ L+GYSL +AD
Sbjct: 650  PLDAGLIPKFINRKHGKESIDFQHQSLEPILSETYGIMVYQEQIMKIAQDLAGYSLGQAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM + +  F+ GA KNG++  IA  +F+ +  FA+Y FNKSH+ AY  
Sbjct: 710  LLRRAMGKKKVSEMQRHRAIFVDGAVKNGVTNVIAEQLFDQMVLFAEYCFNKSHSTAYGA 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K HYPV ++AA +T+   + +KI+++  +     I +MPP++NT  VDF   
Sbjct: 770  VTYQTAYLKAHYPVAYMAALLTVNAGSADKIQRYISNCNSMGINVMPPNINTSGVDFTPK 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            DN I +  +A+K +G    R I+ +   D  F SL  FC R+    +NRR LE+L+ +GA
Sbjct: 830  DNSILFGFSAVKNLGDGAIRKIITSRDEDGQFTSLAQFCDRISLGSVNRRGLEALIHSGA 889

Query: 891  LDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---------KIT 939
            LDC     +R QL+  LD   ++A    K+RT+   N+F     T ++            
Sbjct: 890  LDCLEKNANRAQLIADLDLTIEWASSRAKDRTSGQGNLFDLSNSTNNESSPTDDYSSAPK 949

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
             ++      S + + E+  +GFY S HPL       + +              + + + A
Sbjct: 950  AKEVQEYLPSDKLKLEKEHVGFYLSDHPLKQLSEPAKLIAPISLSSLEDQKDKSKVSVIA 1009

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            M+   ++  TRKG R+  +   +     EA  FP
Sbjct: 1010 MIPEMREVTTRKGDRMAIIQLEDLTGSCEAVVFP 1043


>gi|304406873|ref|ZP_07388528.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9]
 gi|304344406|gb|EFM10245.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9]
          Length = 1087

 Score = 1041 bits (2693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1034 (38%), Positives = 597/1034 (57%), Gaps = 28/1034 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS YSLL+GA  + ++  + A     A+A+TD   ++ A+ F +     GI+P
Sbjct: 10   RFVHLHVHSEYSLLDGAARVRDLAARAAELGMDALALTDHGVMYGAIPFYKACKENGIRP 69

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +          + + P   +  ++LL     GY+ L++LV+   L        
Sbjct: 70   IIGCEVYMTAGSRFDKGTRKENP---IYHLILLAKNETGYRNLMKLVTIGQLEG-LHYRP 125

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI +  L     EG+I L+    G + +       + A+   L +K +FGD  Y+ LQ H
Sbjct: 126  RIDMESLA-AHAEGIICLSSCLGGEVPQHLLHGRPEEAKAAALRYKAIFGDDYYIELQDH 184

Query: 190  RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +   +++ LA    + L ATN++ +L  ED    DVL+ +     V  +DR ++
Sbjct: 185  GIIEQKKVMPELIALAREIGVKLAATNDAHYLQPEDATMQDVLICIGTGKTVEDEDRFKI 244

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQKE 306
              D  YLK+  EM ++F  +PEA+ NT EIA +C   L +    LP F    E       
Sbjct: 245  ASDQLYLKSGEEMAALFRHVPEAIANTAEIADKCRLELSLGRAALPTFRPVPEGM----S 300

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L      GL  R A      G      ++RLD+EL VI RM +S YFLIV DFI++
Sbjct: 301  SADFLAELCRDGLASRYA------GAPEPAAQERLDYELAVIERMGYSDYFLIVWDFIRF 354

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I  GPGRGS AGS+ AY L ITD+DPL+  LLFERFLNP+R+SMPD DIDF  +R
Sbjct: 355  AHERGIRTGPGRGSSAGSLVAYTLNITDVDPLKHKLLFERFLNPERVSMPDIDIDFNDER 414

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV  KYG E VAQIITFG++ A+AA+RDVGRA+ +P+ +VDR  KLIPN     
Sbjct: 415  RDEVIAYVSAKYGEEHVAQIITFGTMAARAAVRDVGRAMNVPFGEVDRAAKLIPNQLGIT 474

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+      REA    P  + LL+++ K+EG+ RHASTHAAG+VI   PL+  VP+ 
Sbjct: 475  LE-EALRISPELREASAKQPRTEALLKMAMKVEGMPRHASTHAAGVVISQEPLTHYVPLQ 533

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                    +TQ++M+ +E  GL+K DFLGL+TL++++++L ++ +  G  +D   I  DD
Sbjct: 534  -AGTDRTALTQYSMENLEAVGLLKMDFLGLRTLSIVERTLRWVKELYGRDIDFRTIADDD 592

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              TY +L    T GIFQLES+G+R+ L+ M+P   EDI+++++LYRPGP++ I  Y   K
Sbjct: 593  PLTYEMLGRGETTGIFQLESTGVRRVLKEMKPSVFEDIVSVLALYRPGPMEFIPKYIQGK 652

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+ ++   HP ++P+L +T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E +
Sbjct: 653  HGQVEVEYPHPSLEPILSDTYGIIVYQEQIMQIASAMAGFSLGEADLLRRAVSKKKREVL 712

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F+ G+ K G ++  A  +++++ +FADYGF ++HAAAY V+++QTA++K HYPV
Sbjct: 713  DEERAHFVGGSLKQGYAEADANLVYDMIVRFADYGFPRAHAAAYGVLAFQTAYLKAHYPV 772

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRIYYSL 839
             F+A+ +     N  K  ++    R+  + ++PP VN   V F            I + L
Sbjct: 773  PFMASMLASVTGNQRKTAEYVDACRRMGMDVLPPDVNESGVTFTPVHRAGEARGAIRFGL 832

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AA+K VGT     IM+  A++P+DSL D C RVD + +N+RV+ESLV +GA D     R 
Sbjct: 833  AAVKNVGTQAIESIMKERAERPYDSLTDMCRRVDLRVVNKRVMESLVQSGATDSLPGHRS 892

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            QLL +LD I   A    K+R     N+F  ++   + ++ L      ++  + E E+ +L
Sbjct: 893  QLLGALDEIVDAAAKWRKDREELQINLFGFDE-VINWEVELPDVRPFSTGQKLELERELL 951

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G Y SGHP+D  +  L   GI    +      G       MVVS +   TRKG  + ++ 
Sbjct: 952  GLYLSGHPIDAVEEALSPHGIDRLVDLAEAEDGTLAVFPIMVVSVKPMMTRKGQAMAFLE 1011

Query: 1020 FSEPAKEYEANFFP 1033
              +     EA  FP
Sbjct: 1012 VEDRIMRVEAVAFP 1025


>gi|218249957|ref|YP_002375087.1| DNA polymerase III subunit alpha [Borrelia burgdorferi ZS7]
 gi|226321885|ref|ZP_03797411.1| DNA polymerase III subunit alpha [Borrelia burgdorferi Bol26]
 gi|218165145|gb|ACK75206.1| DNA polymerase III subunit alpha [Borrelia burgdorferi ZS7]
 gi|226233074|gb|EEH31827.1| DNA polymerase III subunit alpha [Borrelia burgdorferi Bol26]
          Length = 1161

 Score = 1041 bits (2693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1036 (38%), Positives = 608/1036 (58%), Gaps = 25/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 15   MSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 74

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +      K   +          ++LL     GY+ L++L S  YL   
Sbjct: 75   AGIKPIIGIEAYMAKTS--KFLKKQDDLGKMSYHLILLAKNELGYKNLLKLTSISYLEG- 131

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 132  FYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 190

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V  +    +PL A N+S +++ ED  A D+++ +      S +
Sbjct: 191  ELQRHGIKDQDIVNERLVNYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDE 250

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKEC 300
            +R    T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E 
Sbjct: 251  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEF 310

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +       L +  + GL+ R               + R  +EL+VI  M F GYFLIV
Sbjct: 311  NTLG----EYLEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRNVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F     +         + F   + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|312147881|gb|ADQ30540.1| DNA polymerase III subunit alpha [Borrelia burgdorferi JD1]
          Length = 1161

 Score = 1041 bits (2693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1036 (38%), Positives = 609/1036 (58%), Gaps = 25/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 15   MSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 74

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +      K   +          ++LL     GY+ L++L S  YL   
Sbjct: 75   AGIKPIIGIEAYMAKTS--KFLKKQDDLGKMSYHLILLAKNELGYKNLLKLTSISYLEG- 131

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 132  FYYRPRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 190

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S +
Sbjct: 191  ELQRHGIKDQDIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDE 250

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKEC 300
            +R    T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E 
Sbjct: 251  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEF 310

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +       L +  + GL+ R               + R  +EL+VI  M F GYFLIV
Sbjct: 311  NTLG----EYLEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRNVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F     +         + F   + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|14195653|sp|O51526|DPO3A_BORBU RecName: Full=DNA polymerase III subunit alpha
          Length = 1147

 Score = 1041 bits (2693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1036 (38%), Positives = 610/1036 (58%), Gaps = 25/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 1    MSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +      K   +          ++LL     GY+ L++L S  YL   
Sbjct: 61   AGIKPIIGIEAYMAKTS--KFLKKQDDLGKMSYHLILLAKNELGYKNLLKLTSISYLEG- 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 118  FYYRPRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 176

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S +
Sbjct: 177  ELQRHGIKDQDIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDE 236

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKEC 300
            +R    T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E 
Sbjct: 237  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEF 296

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +       L +  + GL+ R               + R  +EL+VI  M F GYFLIV
Sbjct: 297  NTLG----EYLEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIV 345

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 346  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 405

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 406  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 465

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 466  DGPK--VSLKEVLDDNSLKECFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 524  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 583

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 584  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 643

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 644  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 703

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 704  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 763

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 764  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 823

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 824  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 883

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD++ +     + N+     ++F     +         + F   + S     E+ 
Sbjct: 884  TLFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 943

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 944  LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1003

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1004 FGVIEDFKGAIDIVVF 1019


>gi|225548617|ref|ZP_03769664.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 94a]
 gi|225370647|gb|EEH00083.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 94a]
          Length = 1161

 Score = 1041 bits (2692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/1036 (38%), Positives = 607/1036 (58%), Gaps = 25/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 15   MSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 74

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +                     ++LL     GY+ L++L S  YL   
Sbjct: 75   AGIKPIIGIEAYMAKTSKFLKKQDDLEKM--SYHLILLAKNELGYKNLLKLTSISYLEG- 131

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 132  FYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 190

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S +
Sbjct: 191  ELQRHGIKDQDIVNERLVEYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDE 250

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKEC 300
            +R    T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E 
Sbjct: 251  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEF 310

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +       L +  + GL+ R               + R  +EL+VI  M F GYFLIV
Sbjct: 311  NTLG----EYLEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F     +         + F   + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQAFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|312149376|gb|ADQ29447.1| DNA polymerase III subunit alpha [Borrelia burgdorferi N40]
          Length = 1161

 Score = 1041 bits (2692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1036 (38%), Positives = 608/1036 (58%), Gaps = 25/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 15   MSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 74

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +      K   +          ++LL     GY+ L++L S  YL   
Sbjct: 75   AGIKPIIGIEAYMAKTS--KFLKKQDDLGKMSYHLILLAKNELGYKNLLKLTSISYLEG- 131

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 132  FYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 190

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V  +    +PL A N+S +++ ED  A D+++ +      S +
Sbjct: 191  ELQRHGIKDQDIVNERLVNYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDE 250

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKEC 300
            +R    T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E 
Sbjct: 251  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEF 310

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +       L +  + GL+ R               + R  +EL+VI  M F GYFLIV
Sbjct: 311  NTLG----EYLEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRNVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F     +         + F   + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDGFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|195941713|ref|ZP_03087095.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 80a]
          Length = 1161

 Score = 1041 bits (2692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1036 (38%), Positives = 609/1036 (58%), Gaps = 25/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 15   MSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 74

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +      K   +          ++LL     GY+ L++L S  YL   
Sbjct: 75   AGIKPIIGIEAYMAKTS--KFLKKQDDLGKMSYHLILLAKNELGYKNLLKLTSISYLEG- 131

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 132  FYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 190

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S +
Sbjct: 191  ELQRHGIKDQDIVNERLVEYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDE 250

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKEC 300
            +R    T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E 
Sbjct: 251  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEF 310

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +       L +  + GL+ R               + R  +EL+VI  M F GYFLIV
Sbjct: 311  NTLG----EYLEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPIYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F     +         + F   + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|307729084|ref|YP_003906308.1| DNA polymerase III subunit alpha [Burkholderia sp. CCGE1003]
 gi|307583619|gb|ADN57017.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1003]
          Length = 1199

 Score = 1041 bits (2692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1042 (38%), Positives = 606/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL++HS +S+ +G + L++++   A D Q A+A+TD  N F  + F ++A   G
Sbjct: 5    SDPRFVHLRLHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKG 64

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI GC + I   D+                ++LLV    GY  L EL+S+  L +Q +
Sbjct: 65   VKPIAGCDVWITNPDD----------RDKPSRLLLLVKDRRGYLNLCELLSKASLTNQYR 114

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +   WL+    EGL+ L+G   G +  A    + + A++  L + K+F    Y+ L
Sbjct: 115  GRAEVEAGWLESGLGEGLLALSGAQQGDVGLALAAGNQEAAKRNALHWAKVFPGGFYIEL 174

Query: 187  Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q   +        Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++   R
Sbjct: 175  QRCGQPGGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRR 234

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R TP+ Y + + EMV++F+D+P AL N+VEIA+RC+  L++  P LP F   +   + 
Sbjct: 235  QKRFTPEQYFRTQDEMVALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSL- 293

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L + +  GLE RLAQ       +    + Y QRL+FE   + +M F GYFLIVA
Sbjct: 294  ---DDYLVHLSKQGLETRLAQLYPDEAERAAQRETYYQRLEFECGTVIKMGFPGYFLIVA 350

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 351  DFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDID 410

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 411  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPF 470

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LLE++Q++EG+ R+   HA G++I    L+
Sbjct: 471  KPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGITRNVGMHAGGVLIAPGKLT 530

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 531  DFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKKDWS 590

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPGP+D 
Sbjct: 591  LAQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDL 650

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 651  IPSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 710

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM + +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 711  GKKKPEEMAQHRELFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 770

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+M+L MD+ EK+K   +D     + ++PP +N     F+        
Sbjct: 771  WLKAHHPAEFMAANMSLAMDDTEKVKILFEDCIANKMTVLPPDINLSAYRFEPVAEADGK 830

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  D  F  + DFC+R+D + +NRR +E+L+ AGA
Sbjct: 831  RSRTIRYGLGAIKGSGQNAIEEILRAREDGAFIDIFDFCNRIDRRVVNRRTVEALIRAGA 890

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QL+ S+    + A+    N       +F       S    L          
Sbjct: 891  FDSLHANRAQLIASVSLAMEAAEQASANAL--QAGLF-DMGDAPSQGHELVDEPEWPEKK 947

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            + + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A +V S + + T+
Sbjct: 948  KLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKIGEL---KEGRDKLVAGIVASLRTQMTQ 1004

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1005 RGKMM-IALLDDGTGQCEVTVF 1025


>gi|269956096|ref|YP_003325885.1| DNA polymerase III subunit alpha [Xylanimonas cellulosilytica DSM
            15894]
 gi|269304777|gb|ACZ30327.1| DNA polymerase III, alpha subunit [Xylanimonas cellulosilytica DSM
            15894]
          Length = 1181

 Score = 1041 bits (2692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1071 (33%), Positives = 551/1071 (51%), Gaps = 54/1071 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL VHS +S+L+GA  +  ++D++AA  Q A+AITD   LF A EF + A  
Sbjct: 1    MPATDEFVHLHVHSEFSMLDGAARIGELVDEVAAQGQKAVAITDHGYLFGAFEFWKTATN 60

Query: 65   AGIQPIIGCQLDIDMQ-DNLKMTNQ-------GKTPFPT-------VPSIVLLVSTAEGY 109
             G++PIIG +  +           Q          P P           + L      G 
Sbjct: 61   KGVKPIIGVEAYVTPGTSRFDQKRQLYGQPLPDGRPDPDDVSARGAYTHMTLWARDNVGM 120

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L    S   L  Q  +  R+    LQ   + GL   TG  SG I         + A +
Sbjct: 121  HNLFRASSLASLEGQMGKWPRMDRDLLQRY-SPGLTATTGCPSGEIQTRLRLGQWEEALR 179

Query: 170  RLLTFKKLF-GDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEA 227
                 + LF  +  YV L  H      R ++ +++LA     P+VATN+  ++ E D  +
Sbjct: 180  AAGELQDLFGREHFYVELMDHGLEIETRVTKDLLRLAQEIGAPIVATNDLHYVKEADATS 239

Query: 228  HDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
             + L+A+   + +   +R +     +Y+K+ +EM  +F +LPEA+ NT+ IA  C     
Sbjct: 240  QEALLAINSGSTLDDPNRFKFDGTGYYVKSSAEMARLFRELPEAISNTLLIAESCEVSFD 299

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
              A  +P F   + +D    E +    +   GL  R   G         D R R D+E+ 
Sbjct: 300  TQANYMPHFPVPDGED----EISWFVKEVENGLRRRYPDGI------PDDVRTRADYEVG 349

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI +M F GYFLIVADFI W+K+N I VGPGRGS AGS+ AYA+ IT++DP+ + LLFER
Sbjct: 350  VIIQMGFPGYFLIVADFINWSKRNGIRVGPGRGSAAGSMVAYAMGITELDPIPYDLLFER 409

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPD D+DF + RR E IRYV  KYG +RVAQI+T+G+++AK A++D  R L 
Sbjct: 410  FLNPERVSMPDVDVDFDERRRGEAIRYVTEKYGDDRVAQIVTYGTIKAKQAIKDSARLLG 469

Query: 467  MPYSQVDRLCKLIPND-PAHPVSLQAI--------ADDSRFREARLADPSVDRLLEISQK 517
             P++  ++L K +P       + L  I        A+ + FR+    DP   R++E+++ 
Sbjct: 470  QPFAMGEKLTKAMPPAVMGKDIPLSGIFDPKHPRYAEAAEFRQVHDVDPEAQRVVELARG 529

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EGL R    HAAG+++   PL  ++P+ +  +    +TQF+    E  GLIK DFLGL+
Sbjct: 530  IEGLKRQWGVHAAGVIMSSEPLIDIIPIMKRPQDGAVITQFDYPTSEGLGLIKMDFLGLR 589

Query: 578  TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT+L  +L+ +       V++  +  DD  TY LL    TLG+FQL+   MR  L  M+
Sbjct: 590  NLTILDDALENIVGNGKEPVEIEKVGLDDPTTYELLARGDTLGVFQLDGGPMRALLRQMR 649

Query: 637  PDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVII 690
            PD  ED+ A+++LYRPGP+       Y  RKNG ++   IHP +      +L  T G+I+
Sbjct: 650  PDNFEDVSAVIALYRPGPMGMNSHTNYALRKNGLQQNTPIHPELAEPLAEVLDTTYGLIV 709

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQV + AQ+L+GYSL +AD+LRRAMGKK KE +DK+   F +G  + G S      ++
Sbjct: 710  YQEQVQRAAQVLAGYSLGQADLLRRAMGKKKKEILDKEFVPFQAGMRERGYSDAAIQAVW 769

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            ++L  FA Y FNK+H+A Y ++SY TA++K +YP E++AA +    ++ +K+  +  + R
Sbjct: 770  DVLVPFAGYAFNKAHSAGYGLVSYWTAYLKANYPAEYMAALLQSTREDKDKLALYLNECR 829

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFC 869
            +  I ++PP VN     F      + + L+ ++ VG      I+    +   + S  DF 
Sbjct: 830  RMGITVLPPDVNVSAAKFTAVGKDVRFGLSGVRNVGANVVDAIVRTREEKGAYTSFTDFL 889

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             +V +   N+R +ESL+ AGA D    SR  LL   +        V++       ++FA 
Sbjct: 890  DKVPAVVCNKRTIESLIKAGAFDSLEASRRALLVVHEQAVDSVITVKRKEAEGQFDLFAG 949

Query: 930  EKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
              G   D      + +      +   +   E+ +LG Y S HPL   + +L +       
Sbjct: 950  FGGDDDDAGMSFSVDVPDLPDWDKKQKLAFEREMLGLYVSDHPLSGLEHVLTRAADTSIA 1009

Query: 985  ESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +        + + +A ++ S Q+K ++ G+    VT  +     E  FF
Sbjct: 1010 TLMGDEGRPENSTVTVAGLITSLQRKMSKNGNPWAAVTVEDLEGSVEVMFF 1060


>gi|291544638|emb|CBL17747.1| DNA polymerase III catalytic subunit, DnaE type [Ruminococcus sp.
            18P13]
          Length = 1161

 Score = 1041 bits (2692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1041 (35%), Positives = 582/1041 (55%), Gaps = 35/1041 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL VH+ YSLL+GA  +  ++ +I    Q A+AITD   ++ A+EF Q A  AGI+
Sbjct: 2    PDFVHLHVHTEYSLLDGACRIQQLIQRIKELGQTAVAITDHGCMYGAVEFWQAAKEAGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC++ +  +      ++  T   +   +VLL     GYQ LI+LVS  Y+       
Sbjct: 62   PIIGCEVYVAPRSRHDKVHRLDT---SPYHLVLLCRNQTGYQNLIKLVSLGYIEG-FYNK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
             R+ L  L++   EGLI L+   +G I R         A++  L ++++F  D  Y+ +Q
Sbjct: 118  PRVDLELLEQYH-EGLICLSACLAGEIPRRLVNGDYAGAKEAALRYRQIFGADSYYLEVQ 176

Query: 188  RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++     Q+ +L+    +PLVATN++ +++ ED     VL+ +  +  V      
Sbjct: 177  DHGIREQKTILPQLYRLSRETGIPLVATNDAHYITREDASLQHVLLCIQTNKTVEDPTGM 236

Query: 247  RVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                D +  K+ +EM  +FS +P+A+ NTV IA +C+         LP F      D   
Sbjct: 237  GFETDEFYVKSGAEMAELFSAVPDAISNTVRIAEQCNVEFTFGQLKLPAFQ----MDGVT 292

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +     ++    GL  R  +        A + R+R+ +EL VI +M +  YFLIV DFI+
Sbjct: 293  DTTAFFQHLCREGLHRRYGEDP------APEIRERMQYELRVIQQMGYVDYFLIVWDFIR 346

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A++  +PVGPGRGSGAGS+ AY + IT IDP+R+ LLFERFLNP+R+SMPDFDIDFC +
Sbjct: 347  YARQIGVPVGPGRGSGAGSLCAYCIGITGIDPMRYHLLFERFLNPERVSMPDFDIDFCIE 406

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             R  VI YV  KYG +RVAQII F +++A+AA+RD GRA+ +PY   DR+ KLIP +   
Sbjct: 407  GRQRVIDYVIEKYGSDRVAQIIAFDTMKARAAVRDTGRAMALPYGLCDRVAKLIPGELNM 466

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +   A+       E    D  V +LL+++Q+LEG+ RHA+THAAG+VI   P+S+ VP+
Sbjct: 467  TI-AGAMKVSKELTELYDTDSRVHKLLDMAQRLEGMPRHATTHAAGVVIASAPVSEFVPL 525

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
             +    +  VTQ+ M  +E+ GL+K DFLGL+ LT+++ +   + Q      +  IP DD
Sbjct: 526  QK--NEESIVTQYPMTTLEQLGLLKMDFLGLRNLTVIRDACRAIQQLEPDFRIDQIPLDD 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
               Y +++   T G+FQ ES+GM++ L  ++P C+ED+IA++SLYRPGP+++I  Y   +
Sbjct: 584  PAVYRMMSQGKTGGVFQFESAGMQRVLTKLEPTCMEDLIAVISLYRPGPMESIPRYIRNR 643

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +  E+I   HPL+ P+L+ T G ++YQEQVM+I + L+GYS   AD++RRAM KK  + M
Sbjct: 644  HAPEQITYAHPLLKPILQVTYGCMVYQEQVMEICRSLAGYSYGRADLVRRAMAKKKHKVM 703

Query: 726  DKQKERFISGASK------------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            + +++ F+ G+ +            NG+ +  A  IF+ +  FA Y FNKSHAAAYA ++
Sbjct: 704  EAERQTFLWGSRESDGTVSCPGAVANGVPEATANEIFDQMTSFASYAFNKSHAAAYAYLA 763

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K HY  +++AA MT  + N  K+ ++     ++ + +  P VN   + F VG  
Sbjct: 764  YQTAYLKCHYFPQYMAALMTSVLSNTPKLMEYIALCEEYGMAVCRPDVNVSDMGFTVGSK 823

Query: 834  RIYYSLAAIKGVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I++ L A+KG+G     + I E      + S  DFC R+    + +R +++L+  GALD
Sbjct: 824  GIHFGLLAVKGLGKGVISQVIQERQEHGLYHSFLDFCERMVQLDVGKRTVDNLIRCGALD 883

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
              G++R ++L   + I        +       ++F  +     + + + K      +   
Sbjct: 884  GLGHNRREMLMCYEQIMDAQAGSSRTLIQGQMDLFG-QGSAMPESVPIPKMEEFPPNQLL 942

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              E+ + G Y SGHPL   +   + + +   +E      G  I +  M+ S +    R G
Sbjct: 943  RMEKELTGMYLSGHPLGHLQWCRKLLRLPELKELQDEKDGTGISVLCMLQSVKPHVARNG 1002

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
             ++ ++T  + +   EA  FP
Sbjct: 1003 EKMCFLTLEDLSGTMEAVVFP 1023


>gi|124025641|ref|YP_001014757.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str.
            NATL1A]
 gi|123960709|gb|ABM75492.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str.
            NATL1A]
          Length = 1172

 Score = 1041 bits (2691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1054 (36%), Positives = 593/1054 (56%), Gaps = 42/1054 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV +  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +   AA I+P
Sbjct: 2    AFVPIHNHSDYSLLDGASQLPLMVQRAKELGMPALALTDHGVMYGAIELLKLCKAANIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          + +  +     +V++     GY+ L++L +  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPKKEKRY----HLVVVAKNQIGYENLVKLTTLSHLNGVRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   +L +  +EGLI  T    G I +A       VA +    +K++ GD  Y+ 
Sbjct: 118  FSRPCIDK-YLFKKYSEGLICSTACLGGEIPQAILKGRIDVAREVAAWYKEVLGDDFYLE 176

Query: 186  LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR   S++V+++   ++ ++ATN++ +LS+ D EAHD L+ V    ++S   
Sbjct: 177  IQDHGSIEDRIVNSEIVKISEELDIKIIATNDAHYLSKNDIEAHDALICVLTGKLISDHK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   Y+K+  EM S+F+D  +      A+ENTV+++ +      +    +P F   
Sbjct: 237  RLRYTGTEYIKSEDEMRSLFTDHLDKNVINSAIENTVKLSNKVEEYKILGTYKMPNFPIP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +      +    L+   + GL   L             Y++RLD+EL VI +M F  YFL
Sbjct: 297  DG----YQPIEYLKEITIKGLLEIL--DISKFENLPITYKERLDYELKVIEQMGFPTYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A++ NIPVGPGRGS AGS+ A++L IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 351  VVWDYIRFAREQNIPVGPGRGSAAGSLVAFSLHITNIDPVENGLLFERFLNPERKSMPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC +RR EVI YV  KYG ++VAQIITF  + +KA L+DV R L +PY   DRL KL
Sbjct: 411  DTDFCIERRGEVIDYVTKKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKL 470

Query: 479  IPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L A+    + +  F E    D  V + ++++ ++EG  +    HAAG+VI
Sbjct: 471  IPVVRGKPAKLAAMISKESPNKDFYEKYNNDSKVKKWVDMAMRIEGTNKTFGVHAAGVVI 530

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
                L  LVP+ R+      +TQ+ M+ IE  GL+K DFLGL+ LT+++K++D + +   
Sbjct: 531  AANSLDNLVPLQRN-NDGQIITQYFMEDIESLGLLKMDFLGLRNLTMIEKTIDLVEKSIG 589

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             ++D   +PF D +T+ LL+     GIFQLESSGMRQ ++ ++P  +EDI ++++LYRPG
Sbjct: 590  KRLDPDSLPFTDEKTFELLSRGDLEGIFQLESSGMRQIVKDLKPSSLEDISSILALYRPG 649

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRK+GKE I   H  ++P+L ET G+++YQEQ+M+IAQ L+GY+L +AD
Sbjct: 650  PLDAGLIPKFINRKHGKESIDFQHQSLEPILSETYGIMVYQEQIMKIAQDLAGYTLGQAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM + +  F+ GA KNG++  IA  +F+ +  FA+Y FNKSH+ AY  
Sbjct: 710  LLRRAMGKKKVSEMQRHRTLFVDGAVKNGVTDVIAEQLFDQMVLFAEYCFNKSHSTAYGA 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K HYPV ++AA +T+   + +KI+++  +     I +MPP++NT  VDF   
Sbjct: 770  VTYQTAYLKAHYPVAYMAALLTVNAGSADKIQRYISNCNSMGINVMPPNINTSGVDFTPK 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            DN I +  +A+K +G    R I+ +   D  F SL  FC R+    +NRR LE+L+ +GA
Sbjct: 830  DNSILFGFSAVKNLGDGAIRKIITSRDEDGQFTSLAQFCDRISLGSVNRRGLEALIHSGA 889

Query: 891  LDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---------KIT 939
            LDC     +R QL+  LD   ++A    K+RT+   N+F     T ++            
Sbjct: 890  LDCLEKNANRAQLIADLDLTIEWASSRAKDRTSGQGNLFDLSNSTNNESSPNDDYSSAPK 949

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
             ++      S + + E+  +GFY S HPL       + +              + + + A
Sbjct: 950  AKEVQEYLPSDKLKLEKEHVGFYLSDHPLKQLSEPAKLIAPISLSSLEEQKDKSKVSVIA 1009

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            M+   ++  TRKG R+  +   +     EA  FP
Sbjct: 1010 MIPEMREVTTRKGDRMAIIQLEDLTGSCEAVVFP 1043


>gi|226321045|ref|ZP_03796588.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 29805]
 gi|226233569|gb|EEH32307.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 29805]
          Length = 1161

 Score = 1041 bits (2691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1036 (38%), Positives = 608/1036 (58%), Gaps = 25/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 15   MSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 74

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +      K   +          ++LL     GY+ L++L S  YL   
Sbjct: 75   AGIKPIIGIEAYMAKTS--KFLKKQDDLGKMSYHLILLAKNELGYKNLLKLTSISYLEG- 131

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 132  FYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 190

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V  +    +PL A N+S +++ ED  A D+++ +      S +
Sbjct: 191  ELQRHGIKDQDIVNERLVNYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDE 250

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKEC 300
            +R    T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E 
Sbjct: 251  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEF 310

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +       L +  + GL+ R               + R  +EL+VI  M F GYFLIV
Sbjct: 311  NTLG----EYLEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRNVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F     +         + F   + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDGFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|172061275|ref|YP_001808927.1| DNA polymerase III subunit alpha [Burkholderia ambifaria MC40-6]
 gi|171993792|gb|ACB64711.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MC40-6]
          Length = 1190

 Score = 1041 bits (2691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1042 (39%), Positives = 606/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F Q+A   G
Sbjct: 15   SDPRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKG 74

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 75   IKPIAGCDVWITNPDD----------RDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYR 124

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL    ++GL+ L+G   G I  AF   + + A +    + K+F    Y+ L
Sbjct: 125  GRAELDASWLDGELSQGLLALSGAQQGDIGLAFAAGNEEAARRHAERWAKVFPGGFYIEL 184

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q   LA +  LP+VAT+ + F++++D+ AH+  + ++   +++   R
Sbjct: 185  QRYGQPGAEAYIQQAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANPRR 244

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T D Y + + EMV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 245  QKRFTTDQYFRTQDEMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL- 303

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RL Q       +      Y +RL+FE   I +M F GYFLIVA
Sbjct: 304  ---DDYLVQLSKEGLEKRLEQLFPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVA 360

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 361  DFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDID 420

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 421  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 480

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 481  KPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 540

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 541  DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKADWS 600

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 601  LAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 660

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 661  IPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 720

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 721  GKKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 780

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+        
Sbjct: 781  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLVVLPPDINQSHYRFEPVGEADGK 840

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 841  RSRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRVVNRRTVEALIRAGA 900

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R Q+L S+          +         +F            L      +   
Sbjct: 901  FDSLNANRAQMLASVP--LAMEAAEQAAANAMQAGLF-DMGAESPHAHALVDEPAWDDKR 957

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   +      G +  +A ++ S + + T+
Sbjct: 958  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGDL---KEGRDKLVAGIIASLRTQMTQ 1014

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      + + + E   F
Sbjct: 1015 RGK-MLIALLDDGSGQCEITIF 1035


>gi|83858389|ref|ZP_00951911.1| DNA polymerase III subunit alpha [Oceanicaulis alexandrii HTCC2633]
 gi|83853212|gb|EAP91064.1| DNA polymerase III subunit alpha [Oceanicaulis alexandrii HTCC2633]
          Length = 1150

 Score = 1041 bits (2691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 490/1039 (47%), Positives = 680/1039 (65%), Gaps = 23/1039 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FVHL+V S YSLLEGA+ +            PA A+TD+NNLF ALEFS+    
Sbjct: 1    MSDAP-FVHLRVRSPYSLLEGAIRIKETAALCKTFSMPAAALTDSNNLFGALEFSEVLSG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPIIG      +   ++    G+   P    +VLL  +  GY  L++L S  YL   
Sbjct: 60   EGVQPIIGV----TLSIQVEEPRPGERSRPDGT-LVLLAQSELGYANLMKLSSAAYLDVA 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  + +  + E  ++GLI LTGG  G ++R      +  A++ L   +  F DRLY+
Sbjct: 115  ATDEPHVPIDRVLE-HSDGLICLTGGFDGVLNRFVCAGRTGPAQELLDRLRARFPDRLYL 173

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D    E  +V  AY  +LPLVATN   F   E Y+AHD L+ ++    VS +
Sbjct: 174  ELQRHGRADDVTAEDWLVDRAYALDLPLVATNEPHFPRSELYQAHDALLCISEGAYVSME 233

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR ++T +H  K+ + M   F+DLPEA+ NTVEIA+RC+F  +   PILP F      + 
Sbjct: 234  DRRKLTAEHDFKSGAAMADRFADLPEAIANTVEIAQRCAFRPRTSKPILPSFPT----EG 289

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             + E  ELR +++AGLE RL++  +A     + Y +RLD+EL +I RM F GYFLIV+DF
Sbjct: 290  DRNEAEELRARSIAGLEDRLSKIELAD--TREAYFERLDYELGIIERMGFPGYFLIVSDF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK ++IPVGPGRGSGAGS+ A+ALTIT++DPLRF LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWAKAHDIPVGPGRGSGAGSLVAWALTITNLDPLRFGLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRR EVIRYVQ +YG +RVAQIITFG+LQA+A +RDVGR LQ+P+  VDR+ K +PN+P
Sbjct: 408  QDRRGEVIRYVQERYGQDRVAQIITFGTLQARAVVRDVGRVLQLPFGLVDRIAKQVPNNP 467

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A P++L +A+  + + +E +  D  VDRL+ ++ +LEGL+R+ASTHAAG+VIGDRPL++L
Sbjct: 468  AQPITLAEAVKTEPKLQEMQRNDEMVDRLINVALQLEGLFRNASTHAAGVVIGDRPLTEL 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLI 601
            VP+Y+D RSDLP TQFNMKW+E AGL+KFDFLGLKTLT++ ++L ++   G+ + D+  I
Sbjct: 528  VPLYQDPRSDLPATQFNMKWVEPAGLVKFDFLGLKTLTVISRALSYIESAGLDRPDMDAI 587

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
               D  TY LL    ++G+FQLES+GMR  L  ++PD IEDIIAL+SLYRPGP+ NI VY
Sbjct: 588  SLTDPATYELLGVGASIGVFQLESTGMRDTLRKLKPDSIEDIIALISLYRPGPMKNIDVY 647

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             +RK G+ +   +HP ++P+LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKK 
Sbjct: 648  VDRKFGRAEPDYLHPDLEPVLKETYGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGKKK 707

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            KEEMD+Q+ RF  GA K G+S+  A  IF+L+A+FA YGFNKSHAAAYA+I+YQT W+K 
Sbjct: 708  KEEMDQQRVRFNEGAEKRGVSREKANYIFDLVAEFAGYGFNKSHAAAYALIAYQTGWLKA 767

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            ++P  F+A  M+L+  N EK+  F Q+A++  ++++PP VN    DF + D +I Y+L A
Sbjct: 768  NHPAAFMAGLMSLDSANTEKLAVFFQEAKRIGLEVLPPDVNASEADFSLEDGKIRYALGA 827

Query: 842  IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            I+ VG +   H+ +   A  PF  + DF  RVD +++N+R  E+L  AGA D     R +
Sbjct: 828  IRNVGYSAMEHVADVRKAGGPFRDVFDFAERVDPRQVNKRAFENLARAGAFDTLEPDRAK 887

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS---DKITLEKFSVENSSVRFENEQR 957
             L S + +   +Q  +  R +   ++F           ++  L +    +   R + E  
Sbjct: 888  ALASAEILLSVSQNAQSERDSAQASLFGGGGEGGGTKLERPNLPEPEPWDPVRRLDEELA 947

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKT-RKGSR 1014
             +G+Y SGHPLD   P L + G+  + +  +         RLAA+V  +Q+K + R G +
Sbjct: 948  AIGYYLSGHPLDDMMPALGRRGVVVFADLPSKAAEGARAARLAAVVRRRQEKVSQRSGEK 1007

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
              +VT S+P+ E+EA   P
Sbjct: 1008 FAFVTLSDPSGEFEALVPP 1026


>gi|260655562|ref|ZP_05861050.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1]
 gi|260630010|gb|EEX48204.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1]
          Length = 1140

 Score = 1041 bits (2691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1037 (38%), Positives = 615/1037 (59%), Gaps = 41/1037 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YSLL+GA+   ++  + A   QPA+A+TD   ++ A+EF Q   +AG++P
Sbjct: 4    PFVHLHVHTEYSLLDGAIRCGDLAARTAQWHQPAVAMTDHGVMYGAVEFFQACKSAGVKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +       +          ++LL    EGY  L++LVS     D      
Sbjct: 64   IIGCEMYVAPEGIQSREKRS-------HHLILLAKDDEGYHNLVKLVSIANT-DGFYYKP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI    L    ++GLI  +   +G +           A +    ++ +   +  Y+ +  
Sbjct: 116  RIDHDLLARY-SKGLIASSACLAGEVSSLLLAGEDGRAFETAQLYRDIMGPENYYLEIMS 174

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++      +V++A  +  PL+ATN+S +L+ ED++ H++L+ V  +  ++   R  
Sbjct: 175  NTLPEQVAANKLLVEMARRNGFPLIATNDSHYLNPEDFDWHELLLCVGTNKTINDPGRMS 234

Query: 248  VT-PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFI--LQVHAPILPRFIEKECDDI 303
                D YL++  EM + F +++P+AL NTVEIA RCSF   L+     LP+F   E + +
Sbjct: 235  FEVNDFYLRSPEEMWNFFGAEVPDALTNTVEIAERCSFEFKLKTGHYSLPKFDVPEGETL 294

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                ++ L   A AGLE RL       G    +Y QRL +EL +I++M FSGYFLI+AD 
Sbjct: 295  ----DSFLAKGARAGLEKRLG------GVIPPEYEQRLQYELGIISQMGFSGYFLIIADV 344

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQ  K  +IP+GPGRGS AGS+ AYA+ IT++DPLRF L+FERFLNP+R+SMPD D D  
Sbjct: 345  IQACKNRHIPIGPGRGSAAGSLVAYAMRITELDPLRFGLIFERFLNPERISMPDIDTDVS 404

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
               R+ +IRYV +KYG E V+QIITFG +++KAA++DVGRA+ +PY+ VD++ KL+P+  
Sbjct: 405  DKGREALIRYVIDKYGVENVSQIITFGRMKSKAAIKDVGRAMGLPYADVDKVAKLVPD-- 462

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                  +AI      +     DP V  LL+ + K+EGL RH S HAAG+VI   PL+ +V
Sbjct: 463  GVKSIAEAIEQTPDLKSLNDEDPQVAELLDSASKMEGLARHCSQHAAGVVITPMPLTDVV 522

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIP 602
            P+ R +  +  VTQF+M+ +E  GL+K DFLGL+TL++L+ +L+ + + G   V+L  IP
Sbjct: 523  PV-RKIGENQVVTQFSMEPVENLGLVKMDFLGLQTLSILEDALENIRENGKGNVNLEEIP 581

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD E + LL    TLGIFQLES GMR+ +  M PD   D++A+++LYRPGP+++ +V  
Sbjct: 582  LDDPEVFKLLQNADTLGIFQLESPGMRRLIRRMVPDSFNDLVAILALYRPGPLESGMVDQ 641

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y + K+G E++  +HP ++P+LKET GV++YQEQVM+ A +L+GY+L  AD+LRRAMGKK
Sbjct: 642  YVDCKHG-ERVHYLHPKLEPVLKETYGVVLYQEQVMKCASVLAGYTLGGADLLRRAMGKK 700

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              E M++Q+  F+ GA KNGI K  A NIF+++ KFA YGFNKSH+AAYA+ISYQTAW+K
Sbjct: 701  KIEVMNQQRAIFVEGALKNGIDKNSAENIFDIIQKFAGYGFNKSHSAAYALISYQTAWLK 760

Query: 781  THYPVEFLAASMTLEMD-NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            THYP EF+AA +T ++    + +  + ++ R   I ++ P +N     F      I + L
Sbjct: 761  THYPKEFMAAYLTSKIGAKKDVMASYVKEVRSSGIDVLAPDINESRSSFTAAGEVIRFGL 820

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             A+  +G      I+E+  A  PF  + DF +RVD + +N+  LESL+ AGA DCF  +R
Sbjct: 821  GAVSRMGENAVSAILESRKAGGPFKDMWDFVTRVDLRHVNKAALESLIKAGAFDCFSTNR 880

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             QLL++   +   A  +  +  +   ++F        D++ L     ++   R   E+ V
Sbjct: 881  RQLLEAASPMVDAASRLHVD--DGQASLFGDLSSL--DRVELPDVPDDDLETRLAMEKEV 936

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIG 1016
            +G Y SGHP+D ++ +++        +  A     ++    A ++   +++ T++G  +G
Sbjct: 937  IGMYISGHPIDQFREVIQGQVNATASDL-AHWHSQSVAPVFAGLLTEWKERITKRGDAMG 995

Query: 1017 WVTFSEPAKEYEANFFP 1033
             +   +  +E E   FP
Sbjct: 996  VLRLDDGEREVEVVCFP 1012


>gi|15616854|ref|NP_240067.1| DNA polymerase III alpha chain [Buchnera aphidicola str. APS
            (Acyrthosiphon pisum)]
 gi|11132275|sp|P57332|DPO3A_BUCAI RecName: Full=DNA polymerase III subunit alpha
 gi|25288552|pir||A84958 DNA-directed DNA polymerase (EC 2.7.7.7) alpha chain [imported] -
            Buchnera sp. (strain APS)
 gi|10038918|dbj|BAB12953.1| DNA polymerase III alpha chain [Buchnera aphidicola str. APS
            (Acyrthosiphon pisum)]
          Length = 1161

 Score = 1041 bits (2691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1049 (40%), Positives = 622/1049 (59%), Gaps = 41/1049 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL VHS YS+++G     +++ K A+   PAIAITD NNL+  ++F   A   G
Sbjct: 2    NEPKFIHLHVHSDYSMIDGLSKPEDLVKKAASLNMPAIAITDYNNLYGVIKFYNMAHKLG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG  ++                   +  + LL ST EGY+ LI L+SR Y      
Sbjct: 62   LKPIIGITVNFF----------SDLINNQLTKLTLLASTQEGYKNLILLISRAYQKGYVH 111

Query: 127  Q-SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
               V I   W  EI  +GLI+L+GG  G + +      S +    L  ++K F D  Y+ 
Sbjct: 112  NNHVTIEKKWFSEI-NKGLILLSGGPQGELGKVLLNGQSSLISICLSFYQKYFPDSYYLE 170

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-K 243
            L R +R  +       V L+ +  +P+VATN+  FLS+ED++ H + +A+    ++   K
Sbjct: 171  LFRTNRDNEETYLHLAVDLSLSTGVPIVATNDVCFLSQEDFKIHKIRIAINEGEILQHSK 230

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             +   +   +LK   EM  +FSD+PEAL N+VEIA+RC+  +      LP+F   +    
Sbjct: 231  IQNNYSNQQFLKTTEEMSDLFSDIPEALINSVEIAKRCNVFIHSGKYFLPQFRTGKI--- 287

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ---RLDFELNVIARMKFSGYFLIV 360
                E  L  +A  G++ RL    +    +   Y Q   RLD EL VI +M F GYFLIV
Sbjct: 288  --SVEKYLIKEAYKGIKKRLNSRYLDIEKYKDIYSQYINRLDMELTVINKMGFPGYFLIV 345

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQWAK NNIPVGPGRGSGAGS+ AYAL IT++DPL F+LLFERFLNP+R+SMPDFDI
Sbjct: 346  MEFIQWAKDNNIPVGPGRGSGAGSLVAYALNITEVDPLSFNLLFERFLNPERISMPDFDI 405

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD+VI +V   YG   VAQIITFG+L AKA +RDVGR L  PY  +++L KL+P
Sbjct: 406  DFCMEKRDQVIDHVSEIYGKNAVAQIITFGTLTAKAVIRDVGRVLGYPYGFINKLSKLVP 465

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   +  +A + +S        +  V  L++I++KLEG  R+   HA G+VI    ++
Sbjct: 466  LDPGITLK-EAFSKESELFNLYKNNEDVKNLIDIAKKLEGTNRNIGKHAGGVVISPTKIT 524

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVK 595
               P+Y D + + PVTQF+   IE  GL+KFDFLGL+TLT++  +++ +       +   
Sbjct: 525  DFCPLYCDEKGNNPVTQFDKNDIEYIGLVKFDFLGLRTLTIISYAVEMINTKLNLNKKRT 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            ++++ IP DD + + LL    T G+FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+
Sbjct: 585  ININSIPLDDAKCFKLLKNSETTGVFQLESYGMKDLIKRLQPDCFEDMIALVALFRPGPL 644

Query: 656  DNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +   + NRK+G+E I        H L+ P+L+ T G+I+YQEQVM+IAQ+LSGY+L 
Sbjct: 645  QSGMVDNFINRKHGRENISYPDHKWQHILLKPILESTYGIILYQEQVMEIAQVLSGYTLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAM KK  ++M +Q+  F  GAS NGI K +++ IF+LL KFA YGFNKSH+ A
Sbjct: 705  SADILRRAMSKKNLKDMSEQRAIFEEGASNNGIDKKLSIKIFDLLEKFAGYGFNKSHSVA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K+HYP EF+AA+MT ++DN EKI     ++    ++I+PP++N    +F
Sbjct: 765  YALVSYQTLWLKSHYPAEFIAAAMTSDIDNTEKIVILINESLNMGVKIIPPNINLSKYEF 824

Query: 829  KVGDNRIY-YSLAAIKGVGTTTAR-HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V D     Y L AIKG+G  + +  I E   +K F  L D C R+DS+K+ RRVLE L+
Sbjct: 825  YVNDQGDIVYGLGAIKGIGKNSVQVLIKEREENKFFHDLFDLCMRIDSQKITRRVLEKLI 884

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFS 944
             +G+ DCF  +R  LLQS+D+    ++   + ++ K +++F   +   +   K  L    
Sbjct: 885  MSGSCDCFDKNRNYLLQSIDDAINASKESFRIKSFKQDSLFGIFQNELNQVKKNNLVNL- 943

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYEESVATIRGNNIRLAAMVVS 1003
            V     + +NE +VLGFY +GHP++ YK  L   +      +     R   I +A ++VS
Sbjct: 944  VCPEKNKLQNEYQVLGFYLTGHPINQYKKELECYVNGVKLSQLKFIKRNKKILVAGIIVS 1003

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + K T+  +RI  +   +     E   F
Sbjct: 1004 IKIKITKNKNRIAILVLDDNTSRLEVVIF 1032


>gi|78485459|ref|YP_391384.1| DNA polymerase III, alpha subunit [Thiomicrospira crunogena XCL-2]
 gi|78363745|gb|ABB41710.1| DNA polymerase III, alpha subunit [Thiomicrospira crunogena XCL-2]
          Length = 1158

 Score = 1041 bits (2691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1048 (40%), Positives = 612/1048 (58%), Gaps = 47/1048 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YS+++  + + + +      QQPA+A+TD  N+F+ ++F   A  AGI+PI
Sbjct: 4    FVHLHVHSEYSVVDSTIRVKSAISLAQKSQQPALALTDQMNMFALVKFYTAAMDAGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----GK 126
            IG  L I+ +D              V  +V L    +GY  L  L+S  YL +Q      
Sbjct: 64   IGSDLLIEAEDG------------NVFKVVCLCQNDQGYLNLSHLISMAYLKNQKVVQND 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E   EGLI+L+GG  G + +A       +A KR+  +   F DR Y+ L
Sbjct: 112  MKALIKQEWLAEF-NEGLIILSGGKDGDVGQAILAEKPNLAAKRVSWWASYFPDRFYLEL 170

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R  R  +    +  V +A  +ELP+VATN+  F   ED++AH+V + +    ++   +R
Sbjct: 171  IRTGRDKEELYIAGAVDVAQRYELPVVATNDIRFEQAEDFDAHEVRVCIHDGYILDDPNR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P R + + Y ++  EMV +F D+PEA+ENTVEIA+RC+  L +    LP F   E   + 
Sbjct: 231  PKRYSEEQYYRSSEEMVKLFEDIPEAIENTVEIAKRCNVSLTLGTYFLPDFPVPEGLTL- 289

Query: 305  KEEENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               +     ++  GL+ RL          A     + Y  RL FEL++I +M F GYF I
Sbjct: 290  ---DEYFILESQKGLDERLNFLFGDLSPEAFAEKRKAYDDRLKFELDIITQMGFPGYFFI 346

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFIQW K + +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 347  VADFIQWGKNHQVPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 406

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC +RRDEVI YV  +YG + V+QI+TFG++ AKA +RDVGR L   Y  VD + KLI
Sbjct: 407  VDFCMERRDEVIDYVARQYGQDHVSQIVTFGTMAAKAVVRDVGRVLGNGYGMVDSIAKLI 466

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            PND    +   A+  + + +E    +  V  L++++ KLEG  R+   HA G+VIG +PL
Sbjct: 467  PNDLGIKLQ-GALDQEEQLQERYDNEEDVRLLIDLALKLEGTVRNTGKHAGGVVIGPKPL 525

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-- 597
                P+  +      VTQ +   +E AGL+KFDFLGL+TLT++  +L F+ +     D  
Sbjct: 526  DHFCPVLCEPDGSSVVTQLDKNDVETAGLVKFDFLGLRTLTIIDWALHFINEGKQPGDEG 585

Query: 598  ---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               +  IP DD +T+ L+ T  T G+FQLESSGM+  +  ++PDC EDIIALV+L+RPGP
Sbjct: 586  FVEIERIPLDDSQTFDLIKTGKTTGVFQLESSGMQNLIVRLRPDCFEDIIALVALFRPGP 645

Query: 655  IDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +++ +   +  RK+GKEK+        H  +  +L+ T GVI+YQEQVMQIAQ+L+GY+L
Sbjct: 646  LESGMVDNFIARKHGKEKVSYPDAQYQHDSLKTILEPTYGVILYQEQVMQIAQVLAGYTL 705

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KN +   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 706  GGADMLRRAMGKKKPEEMAKQRSIFKDGAIKNNVDGDLAMKIFDLVEKFAGYGFNKSHSA 765

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQ+AW+KTHYP EF+AA ++ +MDN +K+     +     I +  PS+N   + 
Sbjct: 766  AYALVSYQSAWLKTHYPAEFMAAQISSDMDNTDKVVHMVNECYAMGIDVAQPSINEGEIH 825

Query: 828  FKV--GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
            FK   G   + Y L AIKGVG +    I+     + P+  L DFC RV ++K+N+RV+E+
Sbjct: 826  FKAIRGQKAVRYGLGAIKGVGESALEGIVAERKQNGPYQDLFDFCLRV-TRKVNKRVIEA 884

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKF 943
            L+ AGA+DC   +R  +L S+    + A+  +K+      ++F       ++ +  L   
Sbjct: 885  LISAGAMDCIHNNRQAMLDSVGMALQKAEQKQKDEEAGQTDLFGDVTSFEAENESKLVDV 944

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                  +R + E+ VLG Y +GHP+++Y+  L KM  +                A ++V 
Sbjct: 945  PEMPEKLRLKGEKDVLGLYMTGHPIEIYREELDKMVEQKLSALRPEKWNKK-WAAGLIVE 1003

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             + K TR GSR+G++   +     +   
Sbjct: 1004 ARNKVTRNGSRMGFLAIDDQTARLDVVL 1031


>gi|225551916|ref|ZP_03772856.1| DNA polymerase III subunit alpha [Borrelia sp. SV1]
 gi|225370914|gb|EEH00344.1| DNA polymerase III subunit alpha [Borrelia sp. SV1]
          Length = 1161

 Score = 1041 bits (2691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1036 (38%), Positives = 609/1036 (58%), Gaps = 25/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 15   MSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 74

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +      K   +          ++LL     GY+ L++L S  YL   
Sbjct: 75   AGIKPIIGIEAYMAKTS--KFLKKQDDLGKMSYHLILLAKNELGYKNLLKLTSISYLEG- 131

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 132  FYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 190

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S +
Sbjct: 191  ELQRHGIKDQDIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDE 250

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKEC 300
            +R    T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E 
Sbjct: 251  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEF 310

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +       L +  + GL+ R               + R  +EL+VI  M F GYFLIV
Sbjct: 311  NTLG----EYLEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F     +         + F   + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIRQSFNYQAFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|221218188|ref|ZP_03589654.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 72a]
 gi|225549589|ref|ZP_03770555.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 118a]
 gi|221192136|gb|EEE18357.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 72a]
 gi|225369866|gb|EEG99313.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 118a]
          Length = 1161

 Score = 1041 bits (2691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1036 (38%), Positives = 610/1036 (58%), Gaps = 25/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 15   MSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 74

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +      K   +          ++LL     GY+ L++L S  YL   
Sbjct: 75   AGIKPIIGIEAYMAKTS--KFLKKQDDLGKMSYHLILLAKNELGYKNLLKLTSISYLEG- 131

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 132  FYYRPRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 190

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S +
Sbjct: 191  ELQRHGIKDQDIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDE 250

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKEC 300
            +R    T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E 
Sbjct: 251  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEF 310

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +       L +  + GL+ R               + R  +EL+VI  M F GYFLIV
Sbjct: 311  NTLG----EYLEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRNVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD++ +     + N+     ++F     +         + F   + S     E+ 
Sbjct: 898  TLFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|269795562|ref|YP_003315017.1| DNA polymerase III subunit alpha [Sanguibacter keddieii DSM 10542]
 gi|269097747|gb|ACZ22183.1| DNA polymerase III, alpha subunit [Sanguibacter keddieii DSM 10542]
          Length = 1181

 Score = 1041 bits (2691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1070 (35%), Positives = 575/1070 (53%), Gaps = 49/1070 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            ++    +S  FVHL VH+ YS+L+GA  L ++ ++     Q AIA TD   LF A +F +
Sbjct: 1    MSSAPPRSEDFVHLHVHTEYSMLDGAARLGDLFEETKRVGQSAIATTDHGYLFGAYDFWK 60

Query: 61   KACAAGIQPIIGCQLDIDMQ-DNLKMTN----------QGKTPFPTVPSIVLLVSTAEGY 109
            +A  AG++PIIG +  +         T              +       + +     EG 
Sbjct: 61   QATDAGVKPIIGVEAYVTPGTSRFDNTRVRWGDASQASDDVSARGAYTHLTMWARNNEGM 120

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L    S   L  Q  +  R+    L+   + GLI  TG  SG +           A K
Sbjct: 121  HNLFRASSLASLEGQMGKWPRMDRDLLERY-SPGLIASTGCPSGEVQTRLRLGHYDEAVK 179

Query: 170  RLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                 + +F  +  YV L  H    +      +++LA     P+VATN+  ++ +ED  +
Sbjct: 180  AAGELQDIFGKEYFYVELMDHGLDIETRVFKDLLRLAKDIGAPIVATNDLHYVRQEDSGS 239

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
             + L+A+   + ++  DR +   D +Y+K+ +EM  ++ +LPEA +NT+ IA +C     
Sbjct: 240  QEALLAINSGSTLTDPDRFKFDGDGYYVKSAAEMRRLWKELPEACDNTLVIAEQCEVSFN 299

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
              A  +P F     +D    E +    +   GL+ R   G         + R+R DFE  
Sbjct: 300  TAANYMPNFPAPAGED----ETSWFIKEVETGLQYRYPDGI------PTEVRERADFETK 349

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI +M F GYFL+VADFI W+K NNI VGPGRGSGAGS+ AYA+ ITD+DPL   L+FER
Sbjct: 350  VITQMGFPGYFLVVADFINWSKDNNIRVGPGRGSGAGSMVAYAMRITDLDPLVHGLIFER 409

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNPDR+SMPDFD+DF + RR EVIRYV +KYG +RVAQI+T+G+++AK AL+D  R L 
Sbjct: 410  FLNPDRVSMPDFDVDFDERRRGEVIRYVTDKYGEDRVAQIVTYGTIKAKQALKDSSRLLG 469

Query: 467  MPYSQVDRLCKLIPN-DPAHPVSL--------QAIADDSRFREARLADPSVDRLLEISQK 517
            +PY+  D+L K +P       +SL        +  ++   FR+   ADP   R++E+++ 
Sbjct: 470  LPYAMGDKLTKAMPPAIMGKDISLTGIFDPDDKRYSEAEEFRQVHAADPEAQRVVELAKG 529

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EGL R    HAAG+++   PL  ++P+ R ++    +TQF+    E+ GLIK DFLGL+
Sbjct: 530  IEGLKRQWGVHAAGVIMSSEPLIDIIPIMRRLQDGAVITQFDYPKCEELGLIKMDFLGLR 589

Query: 578  TLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT+L  +L+ +   G + +DL  +  DD  TY LL+   TLG+FQL+  GMR  L+ M+
Sbjct: 590  NLTILDDALENIVMNGKEAIDLESLTLDDPNTYALLSRGDTLGVFQLDGGGMRTLLKLMR 649

Query: 637  PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVII 690
            PD  EDI A+ +LYRPGP+  ++   Y  RKNG +++V IHP ++     +L  T G+I+
Sbjct: 650  PDNFEDISAVGALYRPGPMGANSHTNYALRKNGLQEVVPIHPELEEPLAEVLGTTHGLIV 709

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVM IAQ+++G+SL +AD+LRRAMGKK K E+DKQ E F  G  + G S      ++
Sbjct: 710  YQEQVMSIAQIVAGFSLGQADILRRAMGKKKKSELDKQFEGFSGGMVERGYSMAAVKALW 769

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            ++L  F+DY FNK+H+AAY V+SY TA++K +YP E++AA +T   D+ +K   +  + R
Sbjct: 770  DILLPFSDYAFNKAHSAAYGVVSYWTAFLKANYPTEYMAALLTSVRDDKDKSALYLNECR 829

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFC 869
            +  I ++PP VN+   +F      I + L A++ VG      I+    A + F S  DF 
Sbjct: 830  RMGITVLPPDVNSSSANFTAVGKDIRFGLTAVRNVGANVVEAIVTTREAKQNFTSFTDFL 889

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             +V +   N+R +ESL+ AGA D   + R  L    +        V++       ++FA 
Sbjct: 890  DKVPAVVCNKRTIESLIKAGAFDSLDHPRRALQVVHEQAVDSVIGVKRKEAEGQFDLFAG 949

Query: 930  EKGTFSD----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                  D     + +              E+ +LG Y S HPL   + +L++       +
Sbjct: 950  FGDEADDGMSFSVDIPDLPDWEKKQLLAFEREMLGLYVSDHPLSGLEHVLQQAAEVSIAK 1009

Query: 986  SV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +       G+ + +A ++ S Q+K +++G+    VT  +     E  FF
Sbjct: 1010 LLTDEDRPDGSTVVIAGLITSLQRKMSKQGNPWAAVTIEDLDGGVEVMFF 1059


>gi|115352403|ref|YP_774242.1| DNA polymerase III subunit alpha [Burkholderia ambifaria AMMD]
 gi|115282391|gb|ABI87908.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria AMMD]
          Length = 1177

 Score = 1041 bits (2691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1042 (39%), Positives = 607/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F Q+A   G
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNPDD----------RDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL    ++GL+ L+G   G I  AF  ++ + A +    + K+F    Y+ L
Sbjct: 112  GRAELDASWLDGELSQGLLALSGAQQGDIGLAFAADNEEAARRHAERWAKVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q   LA +  LP+VAT+ + F++++D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T D Y + + EMV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 232  QKRFTTDQYFRTQDEMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RL Q       +      Y +RL+FE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSKEGLEKRLEQLYPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKADWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCIVNNLVVLPPDINQSHYRFEPVGEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 828  RSRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRVVNRRTVEALIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R Q+L S+          +         +F            L      +   
Sbjct: 888  FDSLNANRAQMLASVP--LAMEAAEQAAANAMQAGLF-DMGAESPHAHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   +      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGDL---KEGRDKLVAGIIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      + + + E   F
Sbjct: 1002 RGK-MLIALLDDGSGQCEITIF 1022


>gi|123966261|ref|YP_001011342.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT
            9515]
 gi|123200627|gb|ABM72235.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT
            9515]
          Length = 1165

 Score = 1040 bits (2690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1048 (36%), Positives = 601/1048 (57%), Gaps = 36/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L  HS YSLL+GA  ++ I+D+ +     +IA+TD   ++  L+  +K    GI+P
Sbjct: 2    GFVPLHNHSDYSLLDGASQVSKIVDRASELGMESIALTDHGVMYGVLDLVKKCKDKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ I          + +  +     +V+L    EGY+ L++L +  +L     +  
Sbjct: 62   IIGNEMYIINGSIDDPQPKKEKRY----HLVVLAKNHEGYKNLVKLTTISHLNGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I  S L++   +GLI+ T    G I +A       VAE     +K L G+  Y+ 
Sbjct: 118  FSRPCIDKSLLEKY-KDGLIISTACLGGEIPQAILKGRIDVAENIACWYKNLLGEDFYLE 176

Query: 186  LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    +++++   +++ ++ATN++ ++S  D EAHD L+ V    ++S + 
Sbjct: 177  IQDHGSMEDRIVNVEMIRIGKKYQIKVIATNDAHYISNMDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   Y+K+  EM+ +F+D      + EA+ NTVE++++           +P+F  K
Sbjct: 237  RLRYTGTEYIKSEIEMLRLFNDHIDNESIKEAINNTVEVSQKIEVFDLFGTYRMPKFPLK 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E    +K+  + L   +  GL  RL +  +      + Y +RL  EL +I  M F  YFL
Sbjct: 297  E----EKDSLSFLTKISKEGLLKRLNKANLD--EVDEIYTKRLSSELKIINDMGFPDYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A+ N+IPVGPGRGS AGS+ A++L IT+IDP++  LLFERFLNP R SMPD 
Sbjct: 351  VVWDYIKFARDNSIPVGPGRGSAAGSLVAFSLQITNIDPVKHGLLFERFLNPARKSMPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC DRR EVI YV N+YG ++VAQIITF  + +KA L+DV R L +PY + D+L KL
Sbjct: 411  DTDFCIDRRSEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGESDKLAKL 470

Query: 479  IPNDPAHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L  + D       FR+  L D  V R ++++ ++EG  +    HAAG+VI
Sbjct: 471  IPVVRGKPYKLNEMIDKKSPSPEFRDKYLKDSKVKRWVDLALRIEGTNKTYGVHAAGVVI 530

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
                L  LVP+ R+      +TQ++M  IE  GL+K DFLGLK LT++ K++  +    G
Sbjct: 531  ASESLDMLVPLQRN-NEGQIITQYSMDDIESLGLLKMDFLGLKNLTMIDKTISLIESSTG 589

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             K+++  +P +D++T+ L+      GIFQLESSGM+Q ++  +P+ +EDI ++++LYRPG
Sbjct: 590  QKINVDELPPNDNKTFDLIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALYRPG 649

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRKNG EKI   HPLI  +L ET G+++YQEQ+M+IAQ L+GYSL +AD
Sbjct: 650  PLDAGLIPKFINRKNGSEKIDFPHPLIKSILTETYGIMVYQEQIMKIAQDLAGYSLGDAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM K +  FI GA K G+ K IA ++F+ +  FA+Y FNKSH+ AY  
Sbjct: 710  LLRRAMGKKKVSEMVKHRNIFIEGACKKGVDKKIANDLFDQMVLFAEYCFNKSHSTAYGA 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K HYPV ++A+ +++   + +K++++  +     I+++ PS+N+  +DF V 
Sbjct: 770  VTYQTAFLKAHYPVAYMASLLSVNAGSSDKMQRYISNCYSMGIEVISPSINSSGIDFTVK 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             ++I + L+AIK +G +  ++I+E       F S  D C R+ S  LN+R LESL+  GA
Sbjct: 830  KDQILFGLSAIKNLGDSAIKNIIENRNKLGNFKSFSDLCDRLPSNILNKRNLESLIHCGA 889

Query: 891  LDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE---KFSV 945
            LD F    +R QL   LD + ++A    ++R +   N+F         + +L    K   
Sbjct: 890  LDEFSENKNRAQLFSDLDYVMEWASSRNRDRISGQGNLFDSISNIEHKEFSLPKGSKVDD 949

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +   + + E+++LGFY S HPL       + +      +   +     + L  M+   +
Sbjct: 950  YSLIEKLKLEKQLLGFYLSDHPLKHLAKPAKLVSPISISQLENSHDRTKVSLVGMIPELK 1009

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q  TRKG R+  V   + +   EA  FP
Sbjct: 1010 QITTRKGDRMAIVQLEDLSGTCEAIVFP 1037


>gi|254466532|ref|ZP_05079943.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacterales bacterium Y4I]
 gi|206687440|gb|EDZ47922.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacterales bacterium Y4I]
          Length = 1148

 Score = 1040 bits (2690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 491/1038 (47%), Positives = 669/1038 (64%), Gaps = 51/1038 (4%)

Query: 28   SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTN 87
             L  + D       PAIA+TDTNNLFSALEFS  A  AG+QPIIGCQ+D+          
Sbjct: 2    RLKKLPDLCKKHGMPAIAVTDTNNLFSALEFSVSASGAGVQPIIGCQVDL----RFAEPA 57

Query: 88   QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML 147
             G+ P P  P +VLL  +  GY+ L++L S +YL  QG +   + L  L+   + G+I L
Sbjct: 58   PGERPKPPAP-LVLLAQSEAGYEHLMKLNSCLYLR-QGGELPHVTLEELESY-SGGVICL 114

Query: 148  TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY------DRYRESQVV 201
            +GG  GP+ R         AE  +   K +F DRLYV LQRH G       ++  E   V
Sbjct: 115  SGGPDGPVGRLLQMGQRPAAEALMQRLKAIFPDRLYVELQRHPGEHGQPEAEKQTERGHV 174

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEM 260
            ++AY   LPLVATN+  F   E +EAHD ++ +A    V Q + R R+T  HY K++ EM
Sbjct: 175  EMAYAMGLPLVATNDVYFPDTEMFEAHDAMICIAEGAYVDQVEPRRRLTAQHYFKSQEEM 234

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
            V++F+DLPEA+ENTVEIARRC+F+     PILP+F + E          ELR  A  GL+
Sbjct: 235  VALFADLPEAIENTVEIARRCAFMAYRRDPILPKFADDEV--------AELRRIANEGLQ 286

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
             RLA   I      ++Y++RLDFEL +I  M F GYFLIVADFIQWAK ++IPVGPGRGS
Sbjct: 287  QRLA--VIPHAVSVEEYQERLDFELGIIEGMGFPGYFLIVADFIQWAKDHDIPVGPGRGS 344

Query: 381  GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
            GAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVI+YVQ KYG 
Sbjct: 345  GAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIKYVQEKYGR 404

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFR 499
            ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL KLIP +   P+S+  A+ ++ R  
Sbjct: 405  DKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSKLIPVEGVKPMSIADALKEEPRLS 464

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
            E    +P VDRLL   Q++EGL R A THAAG+VIGDRPL  LVP+YRD RSD+P TQFN
Sbjct: 465  EEARNEPVVDRLLTYGQQVEGLLRSAGTHAAGVVIGDRPLDALVPLYRDPRSDMPATQFN 524

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI------------------ 601
            MKW+E+AGL+KFDFLGLKTLT++Q ++D + Q G  + ++                    
Sbjct: 525  MKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDLHIAADGTQLYEPPEGAENQINAI 584

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY L +   T+ +FQ+ES+GM  AL+ M+P CIEDI+ALV+LYRPGP++NI VY
Sbjct: 585  PLDDKVTYDLYSRAKTVAVFQVESTGMMDALKRMKPTCIEDIVALVALYRPGPMENIPVY 644

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQIAQ+++ Y+L  AD+LRRAMGKKI
Sbjct: 645  CEVKNGQREITSVHPLIDHILEETQGIIVYQEQVMQIAQVMANYTLGGADLLRRAMGKKI 704

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            KE MD ++ +F  GA++NG+ K  A  +F+LL KFA+YGFNKSHAAAYAV+SYQT W+K 
Sbjct: 705  KEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFANYGFNKSHAAAYAVVSYQTGWLKA 764

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
            ++PVEF+A  M  ++   +K+  + ++ ++   ++ +PP +N     F V +  + Y+L 
Sbjct: 765  NHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLGLKYVPPCINRSLATFNVVNGELVYALG 824

Query: 841  AIKGVGTTTARHIMEASA----DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            A+K VG    R + EA      ++PF ++ DF  RV+ KK+ +R LE L  AGA D    
Sbjct: 825  ALKNVGLDVMRLVAEARKENGYERPFVNVFDFARRVNLKKVGKRPLEMLARAGAFDQLDS 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R ++ +SL  +  Y+  V   R +   ++F  E G    +  L        + R   E 
Sbjct: 885  NRRRVFESLGALVDYSAAVHDQRNSSQVSLFG-EAGEDLPEPRLPSVPDWLPAERLSEEF 943

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSR 1014
            + +GFY SGHPLD Y P L++  +   +E  A         ++A +V  +Q++K+ +G+R
Sbjct: 944  KAIGFYLSGHPLDDYMPALKRKDVMTLDEVTAKAERGPFMAKMAGVVAGRQERKSARGNR 1003

Query: 1015 IGWVTFSEPAKEYEANFF 1032
              +   S+P+  +E   F
Sbjct: 1004 FAFAQLSDPSGAFEVTLF 1021


>gi|15594924|ref|NP_212713.1| DNA polymerase III subunit alpha [Borrelia burgdorferi B31]
 gi|2688500|gb|AAC66944.1| DNA polymerase III, subunit alpha (dnaE) [Borrelia burgdorferi B31]
          Length = 1161

 Score = 1040 bits (2690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1036 (38%), Positives = 610/1036 (58%), Gaps = 25/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 15   MSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 74

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +      K   +          ++LL     GY+ L++L S  YL   
Sbjct: 75   AGIKPIIGIEAYMAKTS--KFLKKQDDLGKMSYHLILLAKNELGYKNLLKLTSISYLEG- 131

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 132  FYYRPRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 190

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S +
Sbjct: 191  ELQRHGIKDQDIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDE 250

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKEC 300
            +R    T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E 
Sbjct: 251  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEF 310

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +       L +  + GL+ R               + R  +EL+VI  M F GYFLIV
Sbjct: 311  NTLG----EYLEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGPK--VSLKEVLDDNSLKECFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD++ +     + N+     ++F     +         + F   + S     E+ 
Sbjct: 898  TLFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|223888850|ref|ZP_03623441.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 64b]
 gi|223885666|gb|EEF56765.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 64b]
          Length = 1161

 Score = 1040 bits (2690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1036 (38%), Positives = 610/1036 (58%), Gaps = 25/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 15   MSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 74

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +      K   +          ++LL     GY+ L++L S  YL   
Sbjct: 75   AGIKPIIGIEAYMAKTS--KFLKKQDDLGKMSYHLILLAKNELGYKNLLKLTSISYLEG- 131

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 132  FYYRPRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 190

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S +
Sbjct: 191  ELQRHGIKDQDIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDE 250

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKEC 300
            +R    T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E 
Sbjct: 251  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEF 310

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +       L +  + GL+ R               + R  +EL+VI  M F GYFLIV
Sbjct: 311  NTLG----EYLEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGPK--VSLKEVLDDNSLKECFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD++ +     + N+     ++F     +         + F   + S     E+ 
Sbjct: 898  TLFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|187923250|ref|YP_001894892.1| DNA polymerase III subunit alpha [Burkholderia phytofirmans PsJN]
 gi|187714444|gb|ACD15668.1| DNA polymerase III, alpha subunit [Burkholderia phytofirmans PsJN]
          Length = 1192

 Score = 1040 bits (2690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1042 (38%), Positives = 601/1042 (57%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A   G
Sbjct: 5    SDPRFVHLRVHSEFSIADGIVRLDDIVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKG 64

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI GC + I   D+                ++LLV    GY  L EL+S+  L +Q +
Sbjct: 65   VKPIAGCDVWITNPDD----------RDKPSRLLLLVKDRRGYLNLCELLSKASLTNQYR 114

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +   WL+    EGL+ L+G   G +  A    + + A++  L + K+F    Y+ L
Sbjct: 115  GRAEVEAGWLESGLGEGLLALSGAQQGDVGLALAAGNEEAAKRNALHWAKVFPGGFYIEL 174

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR           Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++   R
Sbjct: 175  QRSGQPGGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRR 234

Query: 246  -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + Y + + EM ++F+D+P AL N+VEIA+RC+  L++  P LP F   +   + 
Sbjct: 235  SKRFTSEQYFRTQEEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSL- 293

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RL Q    A  +    + Y  RL+FE   I +M F GYFLIVA
Sbjct: 294  ---DDYLVQLSKEGLEKRLEQLYPDAAEREAQRETYYARLEFECGTIIKMGFPGYFLIVA 350

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 351  DFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDID 410

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 411  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPF 470

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LLE++Q++EGL R+   HA G++I    L+
Sbjct: 471  KPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLT 530

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 531  DFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWS 590

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPGP+D 
Sbjct: 591  LGQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDL 650

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+E +    P ++ +L+ET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 651  IPSFCARKHGREVVEYPDPRVESVLRETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 710

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM + +E F  GA+KNG++   A  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 711  GKKKAEEMAEHRELFRQGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 770

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------ 831
            W+K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP VN     F+        
Sbjct: 771  WLKAHHPAEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDVNLSAYRFEPVAEPDGK 830

Query: 832  -DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                I Y L AIKG G      I+ A  + PF  + DFC+RVD + +NRR +E+L+ AGA
Sbjct: 831  RSKTIRYGLGAIKGSGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALIRAGA 890

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QL+ S+    + A+    N       +F       S    L          
Sbjct: 891  FDTLHANRAQLIASVSLAMEAAEQASANAL--QAGLF-DMGDAPSQGHELVDEPEWPEKK 947

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            + + E+  LGFY SGH  D YK  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 948  KLQEEKAALGFYLSGHLFDAYKNEVRRFVRQKIGEL---KEGRDKLVAGVIASLRTQMTQ 1004

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1005 RGK-MLIALLDDGTGQCEVTVF 1025


>gi|313893027|ref|ZP_07826604.1| putative DNA polymerase III subunit alpha [Veillonella sp. oral taxon
            158 str. F0412]
 gi|313442380|gb|EFR60795.1| putative DNA polymerase III subunit alpha [Veillonella sp. oral taxon
            158 str. F0412]
          Length = 1135

 Score = 1040 bits (2689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1032 (35%), Positives = 603/1032 (58%), Gaps = 27/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ +SLL+G   L +++ +     QPA+AITD  N+++A+ F ++  A G++P
Sbjct: 3    PFVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +                  +  ++LL  T EGY+ L+++VS+        +  
Sbjct: 63   IIGCEVYVTEHSRFDRPE--GRSRERLKHLILLAETMEGYRNLVKIVSKASTEGMLYR-P 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R     L++  ++G+I L+    G I +    ++ + A++ +  + + +  D  ++ +Q 
Sbjct: 120  RADRDLLRQY-SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQN 178

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +  + + ++++L+  + L +VA+N+  ++ +ED +A D+ + ++     ++ DR +
Sbjct: 179  HGLTEEAKAQEELIKLSKEYGLGVVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLK 238

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  YLK+  EM  +FS +P A+ENT++IA RC+         LP F   E +     
Sbjct: 239  FPNDEFYLKSGDEMAQLFSHIPGAIENTLKIADRCNVEFNFDEHHLPHFDVPEGE----T 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  LR      +           G  +++ ++RLD+EL+VI  M F  YFLIV D++++
Sbjct: 295  SKTYLRKVCEREIPRLY-------GETSEELQKRLDYELDVIGTMGFEDYFLIVWDYVRY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++
Sbjct: 348  AREHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEK 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R + I YV  KYG ERV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+    
Sbjct: 408  RGKAIEYVTRKYGQERVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELG-- 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            ++L         +    ADP+V  L +  +KLEG+ R++STHAAG+VI   PL   VP+ 
Sbjct: 466  ITLDKALQGKELKALYEADPNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPVQ 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                    VTQ++   IE+ GL+K DFLGL+TLT++  +L  +   RG+ +DL  IP DD
Sbjct: 526  NANDEGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
                 +LT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +V  + +
Sbjct: 585  KAACDILTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFID 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK + 
Sbjct: 645  RRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKES 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  Q+E FI G+  NGI ++IA  +F+LL  FA YGFNKSH+AAYA I+YQTA++K HY
Sbjct: 705  VLKAQRESFIQGSINNGIEESIANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHY 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              EF+AA+MT  M N++K+  +    ++ N++++ P +N     F V  + I + L  IK
Sbjct: 765  FPEFMAATMTSFMQNMQKLTYYINACKKHNVKVLGPDINYSERSFAVQGDAIRFGLGGIK 824

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      ++        +  + DFC RVD+K +N+R+LESL+  GA+D F  +R QLL
Sbjct: 825  NVGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGAMDGFKENRNQLL 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
               ++ Q      +K+      ++F   + +  D I +      +   + ++E+   GFY
Sbjct: 885  HMYESAQAVGAKEQKDAAMGTMSLFGDIEESV-DFIAVPNVEDLSEDDKLKDEKEYTGFY 943

Query: 963  FSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             +GHPL  Y   L  +  +    E+     G  I    ++ +K  + TR+   +  +   
Sbjct: 944  ITGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKTDRMTRRNEVMSILRIE 1003

Query: 1022 EPAKEYEANFFP 1033
            + +       FP
Sbjct: 1004 DYSGAANVVAFP 1015


>gi|167646770|ref|YP_001684433.1| DNA polymerase III subunit alpha [Caulobacter sp. K31]
 gi|167349200|gb|ABZ71935.1| DNA polymerase III, alpha subunit [Caulobacter sp. K31]
          Length = 1143

 Score = 1040 bits (2689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 498/1033 (48%), Positives = 681/1033 (65%), Gaps = 20/1033 (1%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             +   FVHL+V S+YSLLEGA+  + I    AA   PA  + D NNLF ALE+S  +   
Sbjct: 4    SEGQGFVHLRVRSAYSLLEGAIKADKIPGLAAAAGMPAAGLVDRNNLFGALEYSVYSKDY 63

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+QPIIGC L +       +       +   P+I LLV    GY  L EL S  YL    
Sbjct: 64   GVQPIIGCALAVS-----GVGAGPTERWARTPTITLLVQNERGYLNLSELSSMAYLESGE 118

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 +  + + E   EGLI+L+GG+ GP+D       +   E  L+  ++ FGDR YV 
Sbjct: 119  MAEPVVPWAKVVE-HAEGLILLSGGTDGPVDALLAAGKTAEGEAALVEMQRAFGDRFYVE 177

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQRH    +   E  +V  AY H+ PLVATN+  +   E Y+AHD L+ ++    V Q +
Sbjct: 178  LQRHGLPRQAAAEPGLVHWAYEHDAPLVATNDVYYAKPELYDAHDALLCISDGAFVGQDE 237

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R RVTP+H+ K+ ++M  +F+DLPEA +NT++IARRC+F++Q   PILP F   +     
Sbjct: 238  RRRVTPEHWFKSSADMRKLFADLPEACDNTLDIARRCAFMVQKRDPILPSFPTGDG---- 293

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + E  EL ++A  GL  RL    +      + Y  RLDFEL++I +M F GYFLIV+DFI
Sbjct: 294  RSEPEELTHQAKEGLRKRL--DGLELAVDEKVYWDRLDFELSIIIKMGFPGYFLIVSDFI 351

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK++ IPVGPGRGSGAGS+ A+ LTITD+DPLRF LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 352  KWAKEHGIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQ 411

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI YVQ KYG +RVAQIITFGSLQA+A LRDVGR +Q+P   VDRLCK++PN+PA
Sbjct: 412  ERREEVIVYVQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGLVDRLCKMVPNNPA 471

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             PV+L QAI  + R ++AR  D +V   L+++ +LEGL+R+ASTHAAG+VIGDRPL+QL 
Sbjct: 472  APVTLAQAIEIEPRLKQARDEDGNVKACLDVALQLEGLFRNASTHAAGVVIGDRPLTQLT 531

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+Y+D RSDLP TQFNMKW+E AGL+KFDFLGLKTLT+L +++  L +RG  +DLS +PF
Sbjct: 532  PLYKDPRSDLPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAVKHLKKRGEIIDLSRLPF 591

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +TY LL +  T+G+FQLES GMR  L  M+   IE+I AL+SLYRPGP+DNI  + +
Sbjct: 592  DDTKTYELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDNIDTFVD 651

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             K  ++ +  +HP ++ +LKET GVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKK KE
Sbjct: 652  CKFDRKPVDYLHPSLEVVLKETYGVIVYQEQVMQIAQILAGYSLGEADLLRRAMGKKKKE 711

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMD QK RF++GA +  + +  + +IFEL+AKFA YGFNKSHAAAYA+I+YQTAW+K + 
Sbjct: 712  EMDLQKIRFVAGAKEKDVPEAQSGSIFELVAKFAGYGFNKSHAAAYALIAYQTAWLKANT 771

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASM+L++ N +K+  F QDAR+F+I + PP VN    DF+V +  + Y+L A++
Sbjct: 772  PVEFLAASMSLDLSNTDKLAVFHQDARRFDIVVRPPDVNRSGADFEVENGEVLYALGAVR 831

Query: 844  GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG    +H++    +  PF  + DF  RVD K +N+R +E+L  AGA D    +R Q+ 
Sbjct: 832  NVGLEAMKHLVAIREEGGPFRDIFDFVERVDPKLVNKRAIENLARAGAFDSLSKNRAQIF 891

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             S D +  + Q +  +R      +F  +    + +  L+K    +     + E   +GFY
Sbjct: 892  ASADVLIAHGQSIAADRQGGQHALFGGDPA--AGRPRLKKTEPWSQVDLLDEELAAVGFY 949

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAMVVSKQQKKTRKGSRIGWVTF 1020
             +GHPLD    +LR+       E +     G    R+  +V  +Q++ ++ G R  +V+ 
Sbjct: 950  LTGHPLDDMVGVLRRRRTHMLTEVIPRAEAGMEAFRMCGVVRRRQERASQSGERFAFVSL 1009

Query: 1021 SEPAKEYEANFFP 1033
            S+P+ EYE   FP
Sbjct: 1010 SDPSGEYEV-LFP 1021


>gi|256832318|ref|YP_003161045.1| DNA polymerase III, alpha subunit [Jonesia denitrificans DSM 20603]
 gi|256685849|gb|ACV08742.1| DNA polymerase III, alpha subunit [Jonesia denitrificans DSM 20603]
          Length = 1181

 Score = 1040 bits (2689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1065 (35%), Positives = 564/1065 (52%), Gaps = 49/1065 (4%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +  FVHL VH+ YS+L+GA  L+++  + A   Q  IA TD   +F A EF  KA AA
Sbjct: 3    SSNADFVHLHVHTEYSMLDGAARLDDLFQETARLGQHTIATTDHGYIFGAYEFWSKARAA 62

Query: 66   GIQPIIGCQLDIDMQ-DNLKMTNQ----------GKTPFPTVPSIVLLVSTAEGYQRLIE 114
            G++PIIG +  +         T +            +         L     EG   L  
Sbjct: 63   GVKPIIGVEAYLTPGTSRFDQTRRLWGEQSQREDDVSARGAYTHFTLWARNNEGLHNLFR 122

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            + S   L  Q  +  R+    LQ   +EGLI  +G  S  +           A +     
Sbjct: 123  MSSLASLEGQMGKWPRMDRELLQTY-SEGLIASSGCPSSEVQTRLRLGQFDEALRAAGEM 181

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +++F  +  YV L  H    +    S+++++A     PLVATN+S ++  +D  + + L+
Sbjct: 182  QEIFGKENFYVELMDHGLSIENRVRSELLEVARKINAPLVATNDSHYVRRDDAASQEALL 241

Query: 233  AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
             +   + +   DR +   D +Y+K+  EM  ++ D+PEA +NT+ IA +C       A  
Sbjct: 242  CINSGSTLLDPDRFKFDGDGYYIKSAQEMRDLWRDIPEACDNTLLIAEQCDVSFNTSANY 301

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +P+F     +D    E +    +   GL  R  QG         D R +  FE+NVI +M
Sbjct: 302  MPKFPCPPGED----ETSWFIKEVERGLHARYPQGI------PDDVRAQAKFEINVITQM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPL+  L+FERFLNPD
Sbjct: 352  GFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMAAYAMRITDLDPLKHGLIFERFLNPD 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPDFD+DF + RR EVIRYV  KYG +RVAQI+T+G+++AK AL+D  R L  P++ 
Sbjct: 412  RVSMPDFDVDFDERRRGEVIRYVSEKYGEDRVAQIVTYGTIKAKQALKDSSRLLGFPFAM 471

Query: 472  VDRLCKLIPN-DPAHPVSLQAIADD--------SRFREARLADPSVDRLLEISQKLEGLY 522
             ++L K +P       +SL  I D           FR+    DP   R++E+++ +EGL 
Sbjct: 472  GEKLTKAMPPAIMGKDISLTGIFDPQDKRYHEAEEFRQLHAGDPDAQRVVELAKGIEGLK 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   PL  ++P+ R  +    +TQF+    E  GLIK DFLGL+ LT+L
Sbjct: 532  RQWGVHAAGVIMSSDPLIDIIPIMRRPQDGAVITQFDYPTCETLGLIKMDFLGLRNLTIL 591

Query: 583  QKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              +LD + Q   +   L  +  DD +TY LL    TLG+FQL+ +GMR  L  M+PD  E
Sbjct: 592  DDALDNIVQNNKEPVILEDLLLDDRKTYELLARGETLGVFQLDGNGMRSLLRLMRPDNFE 651

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQV 695
            DI A+ +LYRPGP+  ++   Y  RKNG++ +  IHP ++     +L  T G+I+YQEQV
Sbjct: 652  DISAVGALYRPGPMGANSHTNYALRKNGQQAVTPIHPELEEPLAEILGNTYGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M IAQ L+GYSL +AD+LRRAMGKK K E+DKQ E F  G    G S      ++++L  
Sbjct: 712  MAIAQKLAGYSLGQADILRRAMGKKKKSELDKQFEMFSQGMIDRGYSMQAVKTLWDILVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            F+DY FNK+H+AAY V+SY TA++K +YP E++AA +T   D+ +K   +  + R+  I 
Sbjct: 772  FSDYAFNKAHSAAYGVVSYWTAYLKANYPTEYMAALLTSVKDDKDKSALYLNECRRMGIT 831

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            ++PP VN+   +F   D  I + L A++ VG      I+    D   F S  DF  +V +
Sbjct: 832  VLPPDVNSSLANFAAVDRDIRFGLTAVRNVGGNVVDAIIATREDKGEFSSFTDFLDKVPA 891

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
               N+R +ESL+ AGA D  G+ R  L    +        V++       ++FA      
Sbjct: 892  VVCNKRTIESLIKAGAFDSLGHPRKALHIIHEQAVDSVISVKRKEAEGQFDLFAEFGSEP 951

Query: 935  SD----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-- 988
             +     + +      +       E+ +LG Y S HPL   + +L +       + +A  
Sbjct: 952  EEGMSFSVDVPMLDDWDKKQLLAFEREMLGLYVSDHPLSGIEHVLTQASDLAIAKLLADE 1011

Query: 989  -TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                G+ + +A +V + Q+K +++G+     T  +     +  FF
Sbjct: 1012 GRPDGSTVTIAGLVTTVQRKMSKQGNPWASATVEDLDGSIDVMFF 1056


>gi|224532747|ref|ZP_03673364.1| DNA polymerase III subunit alpha [Borrelia burgdorferi WI91-23]
 gi|224512365|gb|EEF82749.1| DNA polymerase III subunit alpha [Borrelia burgdorferi WI91-23]
          Length = 1161

 Score = 1039 bits (2688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/1036 (38%), Positives = 608/1036 (58%), Gaps = 25/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 15   MSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 74

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PIIG +  +      K   +          ++LL     GY+ L++L S  YL   
Sbjct: 75   SGIKPIIGIEAYMAKTS--KFLKKQDDLGKMSYHLILLAKNELGYKNLLKLTSISYLEG- 131

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 132  FYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 190

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V  +    +PL A N+S +++ ED  A D+++ +      S +
Sbjct: 191  ELQRHGIKDQDIVNERLVNYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDE 250

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKEC 300
            +R    T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E 
Sbjct: 251  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEF 310

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +       L +  + GL+ R               + R  +EL+VI  M F GYFLIV
Sbjct: 311  NTLG----EYLEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGPK--VSLKEVLDDNFLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRNVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F     +         + F   + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|170733672|ref|YP_001765619.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia MC0-3]
 gi|169816914|gb|ACA91497.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia MC0-3]
          Length = 1175

 Score = 1039 bits (2688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1042 (39%), Positives = 607/1042 (58%), Gaps = 39/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + +++I+   AAD Q A+A+TD  N F  + F Q+A   G
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWIANPDD----------RDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL     +GL+ L+G   G I  A    + + A +    + ++F    Y+ L
Sbjct: 112  GRAELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAAALAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T D Y + + EM ++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 232  QKRFTTDQYFRTQDEMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRLAQGAI---AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RLAQ       +      Y +RL+FE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSKEGLEARLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDSSKADWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L A+KG G      I+ A  +K F  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 828  RSRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QL+ S+    + A   E N       +F     +      L      +   
Sbjct: 888  FDSLNPNRAQLIASVPLAMEAADQAEANAM--QAGLFDMGAES---PHALVDEPAWDDKR 942

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   +      G +  +A ++ S + + T+
Sbjct: 943  RLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKVGDL---KEGRDKLVAGIIASLRTQMTQ 999

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1000 RGK-MLIALLDDGTGQCEITIF 1020


>gi|227497604|ref|ZP_03927825.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226832930|gb|EEH65313.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 1197

 Score = 1039 bits (2688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1077 (33%), Positives = 575/1077 (53%), Gaps = 60/1077 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             K   FVHL VH+ YS+L+GA  + + + +     QPA+AITD   +F A EF + A  A
Sbjct: 11   AKKDDFVHLHVHTDYSMLDGAGKIKDYVAEAKRLGQPALAITDHGYMFGAYEFYEAARKA 70

Query: 66   GIQPIIGCQLDIDMQ-DNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            GI+PI+G +  +         T              +   +   + LL    EG   L+ 
Sbjct: 71   GIKPIVGVEAYMTPGTSRFDKTRVFWGEESQRSDDVSARGSYTHMTLLSRNDEGLHNLMR 130

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S   L  Q  +S R+    LQ   + GLI  +G  S  I         + A +     
Sbjct: 131  LDSYASLEGQWGKSPRMDRELLQRYAS-GLIGTSGCPSSEIQTRLRLGQWEEALRCAGEL 189

Query: 175  KKLFGDRL-YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG    YV L  H    ++     +++LA     PL+ATN+S ++  ED    D ++
Sbjct: 190  QDIFGKEFFYVELMDHGLEIEQRVTKDLLRLAKEIGAPLLATNDSHYVRPEDRTIQDAML 249

Query: 233  AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSF---ILQVH 288
             +   +V+S  DR +   D +YL+   EM  +F ++P+A +NT+ +A +C      +   
Sbjct: 250  CINSGSVLSDPDRFKFDGDTYYLRPGREMRELFREMPQACDNTLLVAEQCDVHFATVDEG 309

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
            A  +P F   E + +    E+    +   G++ R        G   +D R++ ++E+ VI
Sbjct: 310  ASFMPAFPVPEGETM----ESWFIKECWKGMDKRFG------GNIPEDCRKQAEYEIGVI 359

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VAD+I WAK + I VGPGRGSGAGS+ AYA+ IT+++PL+  L+FERFL
Sbjct: 360  VQMGFPGYFLVVADYINWAKNHGIRVGPGRGSGAGSMVAYAMGITELNPLQHGLIFERFL 419

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DF + RR+EVI YV+ KYG ++++Q++T+G ++AK +L+D  R +  P
Sbjct: 420  NPERISMPDIDVDFDERRREEVIDYVKAKYGADKISQVVTYGVIKAKQSLKDSSRVMGYP 479

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIA--------DDSRFREARLADPSVDRLLEISQKLE 519
            Y+  DRL K +P       ++++ I         + + FR     DP   +++E++Q LE
Sbjct: 480  YAVGDRLTKAMPPTIMGKDITIKGIFNPEDERYGEAAEFRALHAEDPDAQKIVELAQGLE 539

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R    HA  +++    L+ ++PM + ++    +TQF+    E  GL+K DFLGL+ L
Sbjct: 540  GMTRQWGVHACAVIMSSATLTDIIPMMQRLQDGAYITQFDYPTCEHLGLLKMDFLGLRNL 599

Query: 580  TLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +L+ + A     +D+  +  DD ETY LL+   TLG+FQL+  GMR  L  M+PD
Sbjct: 600  TVISDALENIVANGKEPLDIDHVALDDAETYQLLSRGETLGVFQLDGGGMRTLLRLMKPD 659

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQ 692
              EDI A+ +LYRPGP+  ++   Y  RKNG+++I  IHP +    +P+L  T G+I+YQ
Sbjct: 660  NFEDISAVGALYRPGPMGAESHTNYALRKNGQQEITPIHPELKEALEPILGNTYGLIVYQ 719

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM+IA  L+G+++ +AD LR+AMGKK  + + K    F +G   NG SK     ++++
Sbjct: 720  EQVMKIATDLAGFTMGKADALRKAMGKKKMDILAKMFVEFEAGMVANGFSKESVKTLWDV 779

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA Y FNK+H+AAY V+SY TA++KTHYP E++AA +T + DN +K+  +  + R  
Sbjct: 780  VVPFAKYAFNKAHSAAYGVVSYWTAYLKTHYPTEYMAALLTSQKDNKDKLALYLGECRHM 839

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
             I+++PP VN     F    + I + L AI+ VG      I+ A  +   F S EDF  +
Sbjct: 840  GIKVLPPDVNASRAQFSAVGSDIRFGLGAIRNVGANVVDGIVAAREEQGDFTSFEDFLDK 899

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V +   N+R ++SL+ AGA D  G SR  L    ++       V++N      ++FA   
Sbjct: 900  VPAVVCNKRTIDSLIKAGAFDSLGKSRRSLQACHEDFVDEIIGVKRNEAVGQFDLFASLG 959

Query: 932  GT--FSDKI----------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            G    S+             +      +   +   E+ +LG Y S HPL   + +L K+ 
Sbjct: 960  GGDQASEDPAFGSGPVFSSEVPDLPEWDKKDKLAFERDMLGLYVSDHPLLGLEGMLSKLA 1019

Query: 980  IKGYEESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 + +       G  + +A ++ S Q+K T++G+        +     EA FFP
Sbjct: 1020 DVEIADLLENEERPDGAMVTVAGLITSLQRKTTKQGNLWAIAQVEDLGGTVEALFFP 1076


>gi|219681609|ref|YP_002467995.1| DNA polymerase III alpha chain [Buchnera aphidicola str. 5A
            (Acyrthosiphon pisum)]
 gi|257471295|ref|ZP_05635294.1| DNA polymerase III alpha chain [Buchnera aphidicola str. LSR1
            (Acyrthosiphon pisum)]
 gi|219624452|gb|ACL30607.1| DNA polymerase III alpha chain [Buchnera aphidicola str. 5A
            (Acyrthosiphon pisum)]
          Length = 1161

 Score = 1039 bits (2687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1049 (40%), Positives = 623/1049 (59%), Gaps = 41/1049 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL VHS YS+++G     +++ K A+   PAIAITD NNL+  ++F   A   G
Sbjct: 2    NEPKFIHLHVHSDYSMIDGLSKPEDLVKKAASLNMPAIAITDYNNLYGVIKFYNMAHKLG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG  ++                   +  + LL ST EGY+ LI L+SR Y      
Sbjct: 62   LKPIIGITVNFF----------SDLINNQLTKLTLLASTQEGYKNLILLISRAYQKGYVH 111

Query: 127  Q-SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
               V I   W  EI  +GLI+L+GG  G + +      S +    L  ++K F D  Y+ 
Sbjct: 112  NNHVTIEKKWFSEI-NKGLILLSGGPQGELGKVLLNGQSSLISICLSFYQKYFPDSYYLE 170

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-K 243
            L R +R  +       V L+ +  +P+VATN+  FLS+ED++ H + +A+    ++   K
Sbjct: 171  LFRTNRDNEETYLHLAVDLSLSTGVPIVATNDVCFLSQEDFKIHKIRIAINEGEILQHSK 230

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             +   +   +LK   EM  +FSD+PEAL N+VEIA+RC+  +      LP+F   +    
Sbjct: 231  IQNNYSNQQFLKTTKEMSDLFSDIPEALINSVEIAKRCNVFIHSGKYFLPQFRTGKI--- 287

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ---RLDFELNVIARMKFSGYFLIV 360
                E  L  +A  G++ RL    +    +   Y Q   RLD EL VI +M F GYFLIV
Sbjct: 288  --SVEKYLIKEAYKGIKKRLNSRYLDIEKYKDIYSQYINRLDMELTVINKMGFPGYFLIV 345

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQWAK NNIPVGPGRGSGAGS+ AYAL IT++DPL F+LLFERFLNP+R+SMPDFDI
Sbjct: 346  MEFIQWAKDNNIPVGPGRGSGAGSLVAYALNITEVDPLSFNLLFERFLNPERISMPDFDI 405

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD+VI +V   YG   VAQIITFG+L AKA +RDVGR L  PY  +++L KL+P
Sbjct: 406  DFCMEKRDQVIDHVSEIYGKNAVAQIITFGTLTAKAVIRDVGRVLGYPYGFINKLSKLVP 465

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   +  +A + +S        +  V  L++I++KLEG  R+   HA G+VI    ++
Sbjct: 466  LDPGITLK-EAFSKESELFNLYKNNEDVKNLIDIAKKLEGTNRNIGKHAGGVVISPTKIT 524

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVK 595
               P+Y D + + PVTQF+   IE  GL+KFDFLGL+TLT++  +++ +       +   
Sbjct: 525  DFCPLYCDEKGNNPVTQFDKNDIEYVGLVKFDFLGLRTLTIISYAVEMINTKLNLNKKRT 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            ++++ IP DD + ++LL    T G+FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+
Sbjct: 585  ININSIPLDDAKCFNLLKNSETTGVFQLESYGMKDLIKRLQPDCFEDMIALVALFRPGPL 644

Query: 656  DNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +   + NRK+G+E I        H L+ P+L+ T G+I+YQEQVM+IAQ+LSGY+L 
Sbjct: 645  QSGMVDNFINRKHGRENISYPDHKWQHILLKPILESTYGIILYQEQVMEIAQVLSGYTLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAM KK  ++M +Q+  F  GAS NGI K +++ IF+LL KFA YGFNKSH+ A
Sbjct: 705  SADILRRAMSKKNLKDMSEQRAIFEEGASNNGIDKKLSIKIFDLLEKFAGYGFNKSHSVA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K+HYP EF+AA+MT ++DN EKI     ++    ++I+PP++N    +F
Sbjct: 765  YALVSYQTLWLKSHYPAEFIAAAMTSDIDNTEKIVILINESLNMGVKIIPPNINLSKYEF 824

Query: 829  KVGDNRIY-YSLAAIKGVGTTTAR-HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V D     Y L AIKG+G  + +  I E   +K F  L D C R+DS+K+ RRVLE L+
Sbjct: 825  YVNDQGDIVYGLGAIKGIGKNSVQVLIKEREENKFFHDLFDLCMRIDSQKITRRVLEKLI 884

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFS 944
             +G+ DCF  +R  LLQS+D+    ++   + ++ K +++F   +   +   K  L    
Sbjct: 885  MSGSCDCFDKNRNYLLQSIDDAINASKESFRIKSFKQDSLFGIFQNELNQVKKNNLVNL- 943

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYEESVATIRGNNIRLAAMVVS 1003
            V     + +NE +VLGFY +GHP++ YK  L   +      +     R   I +A ++VS
Sbjct: 944  VCPEKNKLQNEYQVLGFYLTGHPINQYKKELECYVNGVKLSQLKFIRRNKKILVAGIIVS 1003

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + K T+  +RI  +   +     E   F
Sbjct: 1004 IKIKITKNKNRIAILVLDDNTSRLEVVIF 1032


>gi|216264846|ref|ZP_03436838.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 156a]
 gi|215981319|gb|EEC22126.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 156a]
          Length = 1161

 Score = 1039 bits (2687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/1036 (38%), Positives = 608/1036 (58%), Gaps = 25/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 15   MSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 74

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PIIG +  +      K   +          ++LL     GY+ L++L S  YL   
Sbjct: 75   SGIKPIIGIEAYMAKTS--KFLKKQDDLGKMSYHLILLAKNELGYKNLLKLTSISYLEG- 131

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 132  FYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 190

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V  +    +PL A N+S +++ ED  A D+++ +      S +
Sbjct: 191  ELQRHGIKDQDIVNERLVNYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDE 250

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKEC 300
            +R    T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E 
Sbjct: 251  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEF 310

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +       L +  + GL+ R               + R  +EL+VI  M F GYFLIV
Sbjct: 311  NTLG----EYLEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F     +         + F   + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|107023251|ref|YP_621578.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia AU 1054]
 gi|116690334|ref|YP_835957.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia HI2424]
 gi|105893440|gb|ABF76605.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia AU 1054]
 gi|116648423|gb|ABK09064.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
          Length = 1177

 Score = 1039 bits (2687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1042 (39%), Positives = 607/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + +++I+   AAD Q A+A+TD  N F  + F Q+A   G
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWIANPDD----------RDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL     +GL+ L+G   G I  A    + + A +    + ++F    Y+ L
Sbjct: 112  GRAELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAAALAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T D Y + + EM ++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 232  QKRFTTDQYFRTQDEMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRLAQGAI---AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RLAQ       +      Y +RL+FE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSKEGLEARLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +      +  
Sbjct: 528  DFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAEWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L A+KG G      I+ A  +K F  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 828  RSRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QL+ S+    + A   E N       +F            L      +   
Sbjct: 888  FDSLNPNRAQLIASVPLAMEAADQAEANAM--QAGLF-DMGAESPHAHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   +      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKVGDL---KEGRDKLVAGIIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MLIALLDDGTGQCEITIF 1022


>gi|219682166|ref|YP_002468550.1| DNA polymerase III alpha chain [Buchnera aphidicola str. Tuc7
            (Acyrthosiphon pisum)]
 gi|219621899|gb|ACL30055.1| DNA polymerase III alpha chain [Buchnera aphidicola str. Tuc7
            (Acyrthosiphon pisum)]
 gi|311085980|gb|ADP66062.1| DNA polymerase III alpha chain [Buchnera aphidicola str. LL01
            (Acyrthosiphon pisum)]
 gi|311086554|gb|ADP66635.1| DNA polymerase III alpha chain [Buchnera aphidicola str. TLW03
            (Acyrthosiphon pisum)]
          Length = 1161

 Score = 1039 bits (2686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1049 (40%), Positives = 622/1049 (59%), Gaps = 41/1049 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL VHS YS+++G     +++ K A+   PAIAITD NNL+  ++F   A   G
Sbjct: 2    NEPKFIHLHVHSDYSMIDGLSKPEDLVKKAASLNMPAIAITDYNNLYGVIKFYNMAHKLG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG  ++                   +  + LL ST EGY+ LI L+SR Y      
Sbjct: 62   LKPIIGITVNFF----------SDLINNQLTKLTLLASTQEGYKNLILLISRAYQKGYVH 111

Query: 127  Q-SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
               V I   W  EI  +GLI+L+GG  G + +      S +    L  ++K F D  Y+ 
Sbjct: 112  NNHVTIEKKWFSEI-NKGLILLSGGPQGELGKVLLNGQSSLISICLSFYQKYFPDSYYLE 170

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-K 243
            L R +R  +       V L+ +  +P+VATN+  FLS+ED++ H + +A+    ++   K
Sbjct: 171  LFRTNRDNEETYLHLAVDLSLSTGVPIVATNDVCFLSQEDFKIHKIRIAINEGEILQHSK 230

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             +   +   +LK   EM  +FSD+PEAL N+VEIA+RC+  +      LP+F   +    
Sbjct: 231  IQNNYSNQQFLKTTKEMSDLFSDIPEALINSVEIAKRCNVFIHSGKYFLPQFRTGKI--- 287

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ---RLDFELNVIARMKFSGYFLIV 360
                E  L  +A  G++ RL    +    +   Y Q   RLD EL VI +M F GYFLIV
Sbjct: 288  --SVEKYLIKEAYKGIKKRLNSRYLDIEKYKDIYSQYINRLDMELTVINKMGFPGYFLIV 345

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQWAK NNIPVGPGRGSGAGS+ AYAL IT++DPL F+LLFERFLNP+R+SMPDFDI
Sbjct: 346  MEFIQWAKDNNIPVGPGRGSGAGSLVAYALNITEVDPLSFNLLFERFLNPERISMPDFDI 405

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD+VI +V   YG   VAQIITFG+L AKA +RDVGR L  PY  +++L KL+P
Sbjct: 406  DFCMEKRDQVIDHVSEIYGKNAVAQIITFGTLTAKAVIRDVGRVLGYPYGFINKLSKLVP 465

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   +  +A + +S        +  V  L++I++KLEG  R+   HA G+VI    ++
Sbjct: 466  LDPGITLK-EAFSKESELFNLYKNNEDVKNLIDIAKKLEGTNRNIGKHAGGVVISPTKIT 524

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVK 595
               P+Y D + + PVTQF+   IE  GL+KFDFLGL+TLT++  +++ +       +   
Sbjct: 525  DFCPLYCDEKGNNPVTQFDKNDIEYVGLVKFDFLGLRTLTIISYAVEMINTKLNLNKKRT 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            ++++ IP DD + ++LL    T G+FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+
Sbjct: 585  ININSIPLDDAKCFNLLKNSETTGVFQLESYGMKDLIKRLQPDCFEDMIALVALFRPGPL 644

Query: 656  DNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +   + NRK+G+E I        H L+ P+L+ T G+I+YQEQVM+IAQ+LSGY+L 
Sbjct: 645  QSGMVDNFINRKHGRENISYPDHKWQHILLKPILESTYGIILYQEQVMEIAQVLSGYTLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAM KK  ++M +Q+  F  GA  NGI K +++ IF+LL KFA YGFNKSH+ A
Sbjct: 705  SADILRRAMSKKNLKDMSEQRAIFEEGALNNGIDKKLSIKIFDLLEKFAGYGFNKSHSVA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K+HYP EF+AA+MT ++DN EKI     ++    ++I+PP++N    +F
Sbjct: 765  YALVSYQTLWLKSHYPAEFIAAAMTSDIDNTEKIVILINESLNMGVKIIPPNINLSKYEF 824

Query: 829  KVGDNRIY-YSLAAIKGVGTTTAR-HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V D     Y L AIKG+G  + +  I E   +K F  L D C R+DS+K+ RRVLE L+
Sbjct: 825  YVNDQGDIVYGLGAIKGIGKNSVQVLIKEREENKFFHDLFDLCMRIDSQKITRRVLEKLI 884

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFS 944
             +G+ DCF  +R  LLQS+D+    ++   + ++ K +++F   +   +   K  L    
Sbjct: 885  MSGSCDCFDKNRNYLLQSIDDAINASKESFRIKSFKQDSLFGIFQNELNQVKKNNLVNL- 943

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYEESVATIRGNNIRLAAMVVS 1003
            V     + +NE +VLGFY +GHP++ YK  L   +      +     R   I +A ++VS
Sbjct: 944  VCPEKNKLQNEYQVLGFYLTGHPINQYKKELECYVNGVKLSQLKFIKRNKKILVAGIIVS 1003

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + K T+  +RI  +   +     E   F
Sbjct: 1004 IKIKITKNKNRIAILVLDDNTSRLEVVIF 1032


>gi|229829648|ref|ZP_04455717.1| hypothetical protein GCWU000342_01745 [Shuttleworthia satelles DSM
            14600]
 gi|229791637|gb|EEP27751.1| hypothetical protein GCWU000342_01745 [Shuttleworthia satelles DSM
            14600]
          Length = 1175

 Score = 1039 bits (2686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1048 (35%), Positives = 566/1048 (54%), Gaps = 40/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ +SLL+G+  + + + ++      A AITD   ++  +EF ++  A GI+P
Sbjct: 2    SFVHLHSHTQFSLLDGSNKIRDYVSRVRELGMNAAAITDHGVMYGVIEFYKECHAQGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ +         N G         ++L+     GY  LI++VS  ++ D      
Sbjct: 62   LIGCEVYVATGSRFDR-NSGSAGEDRYYHLILIAENNRGYANLIKIVSAGFV-DGYYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L+    EG+I  +   +G + +       + A++  L  +  F     Y+ LQ 
Sbjct: 120  RVDREILERYH-EGIICTSACLAGQVQKYLQRGQYEAAKEAALWHENTFGHGNYYLELQD 178

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D     ++++L+    +PLVATN+  +   ED+EAHDVL+ +     ++  DR R
Sbjct: 179  HGQAVDGRVVQELIRLSGETGIPLVATNDCHYTMAEDWEAHDVLLCIQTGKKITDTDRMR 238

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM  +F   PEA+ENT +IA RC   ++     +P +      D    
Sbjct: 239  YEGGQYYVKSEEEMRKLFPFAPEAIENTQKIADRCQVTIEFGVTKMPHYAVPRGYDA--- 295

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GL+ R   GA          + +L +EL VI +M +  YFLIV D+I +
Sbjct: 296  -WTYLNKLCYEGLDRRYGDGA-------DALKPQLSYELGVIQKMGYVDYFLIVWDYINY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ +   VGPGRGS AGS+ AY   ITDIDP+RF L+FERFLNP+R++MPD D+DF  + 
Sbjct: 348  ARTHGCTVGPGRGSAAGSLVAYTTGITDIDPIRFQLIFERFLNPERVTMPDIDVDFDYEH 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R +VIRYV  KYG + V QIITFG+L  + A+RDVGR L +PY  VD + K +P +    
Sbjct: 408  RGDVIRYVTEKYGEDAVTQIITFGTLAPRNAIRDVGRVLDLPYGLVDTVAKSVPQELKIT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   +++   D  V  L+++++KLEGL R++STHAAG+VI  + + + VP+ 
Sbjct: 468  ID-KALKANPELKKSYDEDEEVHNLIDMARKLEGLPRNSSTHAAGVVIAAKAMDEYVPLA 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI--PFD 604
            R    ++ VTQFNM  +E+ GL+K DFLGL+TL ++  ++         +DL +   P+D
Sbjct: 527  RGTDGNV-VTQFNMIEVEELGLLKMDFLGLRTLNVIADAVRDARANHPGLDLDINRIPYD 585

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D E Y ++      G+FQLES+GM+  ++ ++P  ++DIIA ++LYRPGP+D I  Y   
Sbjct: 586  DPEVYAMIGRGQCEGVFQLESAGMKSFMKELKPANLDDIIAGIALYRPGPMDFIPRYIKG 645

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K   + IV   P + P+L+ T G I+YQEQVMQI Q L+GYSL  AD++RRAM KK  +E
Sbjct: 646  KKNADAIVYDCPQLKPILESTYGCIVYQEQVMQIVQQLAGYSLGRADLVRRAMSKKHADE 705

Query: 725  MDKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            M++++  FI        +G   NGIS+ +A  I++ +  FA+Y FNKSHAA YAVI+YQT
Sbjct: 706  MERERHNFIFGNREEGVAGCLANGISEAVASKIYDEMMDFANYAFNKSHAACYAVITYQT 765

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K +YP EF+AA MT  ++  +K+ ++    R+  I+++PP +N+    F   D  + 
Sbjct: 766  AYLKHYYPREFMAALMTTFINQSDKVSQYIAHCREIGIEVLPPDINSGDGRFVADDKGVR 825

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y + AIK VG      I+    A  PF +LEDF +RV  K +N+R +E+L+ AGA D   
Sbjct: 826  YGMYAIKSVGHPVIDAIVAERNARGPFKTLEDFLTRVSDKAVNKRSVENLIKAGACDSLD 885

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFE 953
             +R Q+      I       +K+      ++F  A E+G       +      +      
Sbjct: 886  GNRRQMTYIFPTIMDQVSSEKKHSMAGQMSLFDIAGEEGREDFAFKMPDVEEFDRQQLLA 945

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQ 1005
             E+ VLG Y SGHPL+    ++RK       E                 + LA M+ SK 
Sbjct: 946  FEKEVLGIYVSGHPLEDDLDLIRKNTSDNTLEFRLDQEKGQAPIQDKKQVVLAGMITSKN 1005

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + TR    +  +   +     E   FP
Sbjct: 1006 VRFTRNNQPMAILNLEDLYGTVELVVFP 1033


>gi|311087135|gb|ADP67215.1| DNA polymerase III alpha chain [Buchnera aphidicola str. JF99
            (Acyrthosiphon pisum)]
          Length = 1161

 Score = 1038 bits (2685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1049 (40%), Positives = 623/1049 (59%), Gaps = 41/1049 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL VHS YS+++G     +++ K A+   PAIAITD NNL+  ++F   A   G
Sbjct: 2    NEPKFIHLHVHSDYSMIDGLSKPEDLVKKAASLNMPAIAITDYNNLYGVIKFYNMAHKLG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG  ++                   +  + LL ST EGY+ LI L+SR Y      
Sbjct: 62   LKPIIGITVNFF----------SDLINNQLTKLTLLASTQEGYKNLILLISRAYQKGYVH 111

Query: 127  Q-SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
               V I   W  EI  +GLI+L+GG  G + +      S +    L  ++K F D  Y+ 
Sbjct: 112  NNHVTIEKKWFSEI-NKGLILLSGGPQGELGKVLLNGQSSLISICLSFYQKYFPDSYYLE 170

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-K 243
            L R +R  +       V L+ +  +P+VATN+  FLS+ED++ H + +A+    ++   K
Sbjct: 171  LFRTNRDNEETYLHLAVDLSLSTGVPIVATNDVCFLSQEDFKIHKIRIAINEGEILQHSK 230

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             +   +   +LK   EM  +FSD+PEAL N+VEIA+RC+  +      LP+F   +    
Sbjct: 231  IQNNYSNQQFLKTTKEMSDLFSDIPEALINSVEIAKRCNVFIHSGKYFLPQFRTGKI--- 287

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ---RLDFELNVIARMKFSGYFLIV 360
                E  L  +A  G++ RL    +    +   Y Q   RLD EL VI +M F GYFLIV
Sbjct: 288  --SVEKYLIKEAYKGIKKRLNSRYLDIEKYKDIYSQYINRLDMELTVINKMGFPGYFLIV 345

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQWAK NNIPVGPGRGSGAGS+ AYAL IT++DPL F+LLFERFLNP+R+SMPDFDI
Sbjct: 346  MEFIQWAKDNNIPVGPGRGSGAGSLVAYALNITEVDPLSFNLLFERFLNPERISMPDFDI 405

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD+VI +V   YG   VAQIITFG+L AKA +RDVGR L  PY  +++L KL+P
Sbjct: 406  DFCMEKRDQVIDHVSEIYGKNAVAQIITFGTLTAKAVIRDVGRVLGYPYGFINKLSKLVP 465

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   +  +A + +S        +  V  L++I++KLEG  R+   HA G+VI    ++
Sbjct: 466  LDPGITLK-EAFSKESELFNLYKNNEDVKNLIDIAKKLEGTNRNIGKHAGGVVISPTKIT 524

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVK 595
               P+Y D + + PVTQF+   IE  GL+KFDFLGL+TLT++  +++ +       +   
Sbjct: 525  DFCPLYCDEKGNNPVTQFDKNDIEYVGLVKFDFLGLRTLTIISYAVEMINTKLNLNKKRT 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            ++++ IP DD + ++LL    T G+FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+
Sbjct: 585  ININSIPLDDAKCFNLLKNSETTGVFQLESYGMKDLIKRLQPDCFEDMIALVALFRPGPL 644

Query: 656  DNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +   + NRK+G+E I        H L+ P+L+ T G+I+YQEQVM+IAQ+LSGY+L 
Sbjct: 645  QSGMVDNFINRKHGRENISYPDHKWQHILLKPILESTYGIILYQEQVMEIAQVLSGYTLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAM KK  ++M +Q+  F  GAS NGI K +++ IF+LL KFA YGFNKSH+ A
Sbjct: 705  SADILRRAMSKKNLKDMSEQRAIFEEGASNNGIDKKLSIKIFDLLEKFAGYGFNKSHSVA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K+HYP EF+AA+MT ++DN EKI     ++    ++I+PP++N    +F
Sbjct: 765  YALVSYQTLWLKSHYPAEFIAAAMTSDIDNTEKIVILINESLNMGVKIIPPNINLSKYEF 824

Query: 829  KVGDNRIY-YSLAAIKGVGTTTAR-HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V D     Y L AIKG+G  + +  I E   +K F  L D C R+DS+K+ RRVLE L+
Sbjct: 825  YVNDQGDIVYGLGAIKGIGKNSVQVLIKEREENKFFHDLFDLCMRIDSQKITRRVLEKLI 884

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFS 944
             +G+ DCF  +R  LLQS+D+    ++   + ++ K +++F   +   +   K  L    
Sbjct: 885  MSGSCDCFDKNRNYLLQSIDDAINASKESFRIKSFKQDSLFGIFQNELNQVKKNNLVNL- 943

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYEESVATIRGNNIRLAAMVVS 1003
            V     + +NE +VLGFY +GHP++ YK  L   +      +     R   I +A ++VS
Sbjct: 944  VCPEKNKLQNEYQVLGFYLTGHPINQYKKELECYVNGVKLSQLKFIKRNKKILVAGIIVS 1003

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + K T+  +RI  +   +     E   F
Sbjct: 1004 IKIKITKNKNRIAILVLDDNTSRLEVVIF 1032


>gi|170701606|ref|ZP_02892552.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria IOP40-10]
 gi|170133489|gb|EDT01871.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria IOP40-10]
          Length = 1177

 Score = 1038 bits (2685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1042 (39%), Positives = 606/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F Q+A   G
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNPDD----------RDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL    ++GL+ L+G   G I  AF   + + A +    + K+F    Y+ L
Sbjct: 112  GRAELDASWLDGELSQGLLALSGAQQGDIGLAFAAGNEEAARRHAERWAKVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q   LA +  LP+VAT+ + F++++D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T D Y + + +MV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 232  QKRFTTDQYFRTQDDMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RL Q       +      Y +RL+FE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSKEGLEKRLEQLFPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKADWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLVVLPPDINQSHYRFEPVGEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 828  RSRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRVVNRRTVEALIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R Q+L S+          +         +F            L      +   
Sbjct: 888  FDSLNANRAQMLASVP--LAMEAAEQAAANAMQAGLF-DMGAESPHAHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   +      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGDL---KEGRDKLVAGIIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      + + + E   F
Sbjct: 1002 RGK-MLIALLDDGSGQCEITIF 1022


>gi|94969774|ref|YP_591822.1| DNA polymerase III, alpha subunit [Candidatus Koribacter versatilis
            Ellin345]
 gi|94551824|gb|ABF41748.1| DNA polymerase III, alpha subunit [Candidatus Koribacter versatilis
            Ellin345]
          Length = 1159

 Score = 1038 bits (2685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1045 (37%), Positives = 611/1045 (58%), Gaps = 33/1045 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
             P FVHL +H+ YS+L+GA  +  ++ ++    QPA+A+TD  N++ A+ F   A   G+
Sbjct: 2    PPEFVHLHLHTDYSMLDGASDVEKLVARVKELGQPAVAMTDHGNIYGAVHFQNAAKEKGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+GC+L I  ++N +   +G         +++L    EGY+ L+++VS   L      
Sbjct: 62   KAILGCELYICQKENHREAPEGDK----YNHLIVLAENEEGYRNLVKIVSEASLHG-FYY 116

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
              R+  ++L E  ++GLI L+    G +         + A+K   TF  +F  +  Y+ +
Sbjct: 117  KPRVSKNFLAE-HSKGLIGLSACLKGEVAERLTEGKYEAAKKAATTFGDIFGANNFYLEI 175

Query: 187  QRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q     +  R  Q +  L      P+VATN+S +L E+D  A DV++ +     +   +R
Sbjct: 176  QDQGLEEEKRIHQGLFDLEKDLGYPMVATNDSHYLCEDDSHAQDVMVCIQTGKSIHDTNR 235

Query: 246  PRVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             + + + +  K+  EM  +F+     L  T+EIA RC+  L+      PRF   E   I 
Sbjct: 236  MKFSTNQFFVKSAHEMSQVFTGADRVLARTMEIAERCNVKLEKVKNPFPRFDVPEGMSI- 294

Query: 305  KEEENELRNKAVAGLEVRL-----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               ++   + A  G+  R+      Q A    +   +Y +RL+FE++ I +M+F GYFLI
Sbjct: 295  ---DSYFEDVARRGMAKRMNLMRDLQSAGRLRHTFAEYEERLNFEIDTIKKMQFPGYFLI 351

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI++A++NNIPVGPGRGS AGS+ AYA+TITD+DPL+ +LLF+RFLNP+R+SMPD D
Sbjct: 352  VWDFIRYARENNIPVGPGRGSAAGSLVAYAMTITDVDPLQNNLLFQRFLNPERISMPDID 411

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC +RR EVI+YV  KYG ++VAQIITFG++ AKAA++D GRA+ +PY++VDR+ K++
Sbjct: 412  VDFCMNRRGEVIKYVTEKYGRDQVAQIITFGTMAAKAAIKDCGRAMDIPYAEVDRVAKMV 471

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P      +   A+ D      A  ++P V  L++ +++LEGL R++  HA+ +VI  +PL
Sbjct: 472  PTTINITID-GALKDSPMLATAYESEPQVKELIDTAKRLEGLVRNSGVHASAVVIAPQPL 530

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            + LVP+++  ++D  VT ++MK +EK GL+K DFLGL TLT+L  +L  + Q   VK++L
Sbjct: 531  TDLVPLHK-TKNDEIVTAYDMKAVEKMGLLKMDFLGLTTLTILDDALKLIDQTQGVKIEL 589

Query: 599  SLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
              +PFDD +TY  +  +  T G+FQ ESSGMR  L   +PD +ED+ AL +LYRPGPI  
Sbjct: 590  EKLPFDDKQTYERIFHSGYTSGVFQFESSGMRDVLRKYKPDTVEDLTALNALYRPGPIQG 649

Query: 658  IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +   + NRK G+ K+   H  +  +L ET GVI+YQEQVMQIA  L+GYSL +AD+LRR
Sbjct: 650  GMIDDFINRKWGRAKVDYFHDDLKTILVETLGVIVYQEQVMQIANKLAGYSLGDADLLRR 709

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  +EM+KQ++RF  GA   G  K + V+IF+L+ +FA YGFNKSH+AAYA+++Y 
Sbjct: 710  AMGKKDAKEMEKQRDRFTKGAIDRGYDKQLTVHIFDLMEQFAGYGFNKSHSAAYALLAYH 769

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++KTH+P+EF+AA +T    + + + K+  + R   I++ PP VN     F      I
Sbjct: 770  TAYLKTHFPIEFMAALLTSVSGSTDDVVKYINECRDMGIEVRPPDVNVSLASFTPDQGAI 829

Query: 836  YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+AIK +G      I+ A      F S  +FC +VD + LN+RV+ESL+ +GA+D  
Sbjct: 830  RFGLSAIKNLGHNAIESIVTARQAIGKFSSFFEFCEKVDLRLLNKRVVESLIKSGAMDPL 889

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKI-TLEKFSVENSSVR 951
            G  R QL   +D   + AQ  +++  +    +F    E+     K+ +L      +   R
Sbjct: 890  G-RRSQLFAVIDKAMEAAQKTQRDAESGQHGLFGVFDEEPVAGKKVDSLPNVPDWDEHQR 948

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV----ATIRGNNIRLAAMVVSKQQK 1007
              NE+ +LGF+ +GHP++ YK  L        E+      +T +G    +  ++   +  
Sbjct: 949  LANEKEILGFFITGHPMEKYKDKLADFRAMSTEDLKNMRTSTAKGEEYYVGGVMSGVKVA 1008

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
            K++KG      T  +         F
Sbjct: 1009 KSKKGDMYALGTLEDIHGAVSFLCF 1033


>gi|282882675|ref|ZP_06291285.1| DNA polymerase III subunit alpha [Peptoniphilus lacrimalis 315-B]
 gi|281297488|gb|EFA89974.1| DNA polymerase III subunit alpha [Peptoniphilus lacrimalis 315-B]
          Length = 1145

 Score = 1038 bits (2684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1046 (35%), Positives = 584/1046 (55%), Gaps = 47/1046 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F+HL VHS YSLL+ +  +  I  +       A+A+TD  N++ A++F +     G++P
Sbjct: 3    NFIHLHVHSEYSLLDASTKIEEIPVRAKELGMKAVALTDHGNMYGAIDFYKACKKVGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +         +        +VLL    +G + L+++VS  ++ D      
Sbjct: 63   IIGCEIYVSQKSLYLKDRTNER-----YHLVLLAENNQGLKNLMKIVSIAFV-DGYYYKP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+ L  L++  ++G+I  +   +G + R         A+K  L ++ +F  D  ++ LQ 
Sbjct: 117  RVDLDVLKKY-SKGIIATSACLAGEVQRLIQRRDYDGAKKAALRYRDIFGKDNFFLELQD 175

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ R   ++ +L+    + L  +N+  +L +ED +A DVL+ +   + +  + R +
Sbjct: 176  HGIPEQKRVNRELNRLSKETGISLSCSNDVHYLKKEDAKATDVLLCIQTGSKIKDEKRMK 235

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               +  YLK+  EM +IFSD  +A+ NT  IA RC+   +     LP F           
Sbjct: 236  FPTEEFYLKSAEEMENIFSDNLDAINNTGIIADRCNVDFEFGHYHLPEFKVPSG----YT 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+ L   A  GL  R            +  + R + E   I +M F  YFLIV DFI +
Sbjct: 292  NESYLEKLAKEGLNKRY-------KVIDKKIKDRFNMEFQTITQMGFVDYFLIVWDFINY 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AKKNNI VGPGRGS AGS+ +Y L I DIDPL+F LLFERFLN +R+SMPD DIDFC +R
Sbjct: 345  AKKNNIQVGPGRGSAAGSIISYGLGIIDIDPLKFDLLFERFLNKERVSMPDIDIDFCYER 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI YV  KYG ERVAQI+TFG++Q++ A+RDVGR L + YS+VD + K +P+     
Sbjct: 405  REEVIDYVCEKYGDERVAQIVTFGTMQSRQAIRDVGRVLDIAYSRVDYIAKQVPHALKMT 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+     F+E    D     L++I++++EGL RH STHAAG+VI   PL+  VP+ 
Sbjct: 465  LD-KALDISESFKELYEKDKEARNLIDIAKRIEGLPRHTSTHAAGVVISKNPLTDYVPLT 523

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            R     +  TQFNM  +E+ GL+K DFLGL+TLT+L+ ++  +     VK+D S   +DD
Sbjct: 524  R--NDQIIATQFNMIQLEELGLLKMDFLGLRTLTVLRDAISLVYDNYKVKIDFSEFTYDD 581

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +   +     TLG+FQ ESSGMR  L+ ++PD   D++A  +L+RPGP+  I  +   K
Sbjct: 582  EKVLKMFAKAETLGVFQFESSGMRLFLKELKPDAFSDLVAANALFRPGPMKQIPKFIESK 641

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            + K KI  IHP+++P+LK+T G I+YQEQVMQI Q++ GYSL  AD++RRA+ KK    M
Sbjct: 642  HDKSKISYIHPILEPILKDTYGCIVYQEQVMQIVQIVGGYSLGRADIVRRAISKKKMAVM 701

Query: 726  DKQKERFISGA--------SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +++++ FI G          KNG+ +  A  I++L+  FADY FNKSH+ AY+VI+Y++A
Sbjct: 702  EEERKNFIYGNEKENVCGAIKNGVDEKSANEIYDLIIDFADYAFNKSHSVAYSVIAYRSA 761

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K +YP EF+AA ++    +++++  + ++ ++  I ++PP+VN    +F V   +I +
Sbjct: 762  WIKYYYPREFMAAQISTYTSDIKQVSLYIEELKRLGIGLLPPNVNYSQKNFTVEGKKIRF 821

Query: 838  SLAAIKGVGTTTARHIMEASAD-KPFDSLEDF---CSRVDSKKLNRRVLESLVFAGALDC 893
             L A+K VG      I++A      F SL DF     +V ++ LN++ LESL+  GALD 
Sbjct: 822  GLKAVKNVGENLIEAIVQARDKLGNFTSLWDFVDKVQKVSAQVLNKKALESLIRCGALDD 881

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            F  +R Q L   + + +  Q   +N       +F +   +      L      +   +  
Sbjct: 882  FDGNRAQYLAVYEKVMENNQKSIRNNIRGQVTLFGNLNKSED----LPNLKDFSLRDKLN 937

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE------SVATIRGNNIRLAAMVVSKQQK 1007
             E+ V+G Y SGHPLD Y+P L         E      S + I+  +IR+A ++ +K+  
Sbjct: 938  MEKEVIGIYVSGHPLDDYRPALISFSNTNTGEIFESYNSSSLIQNKDIRIAGLLKNKKTM 997

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+    + + +  +     E   FP
Sbjct: 998  ITKTNKVMAFASLEDLFGTIELIIFP 1023


>gi|258645443|ref|ZP_05732912.1| DNA polymerase III, alpha subunit [Dialister invisus DSM 15470]
 gi|260402794|gb|EEW96341.1| DNA polymerase III, alpha subunit [Dialister invisus DSM 15470]
          Length = 1145

 Score = 1038 bits (2683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1032 (35%), Positives = 564/1032 (54%), Gaps = 28/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YSL +G   +  ++  +    Q AIAITD   ++ A+   ++    GI+P
Sbjct: 3    SFVHLHSHTEYSLFDGTCRIKELVSYVKELGQTAIAITDHGVMYGAVYLYKECLKQGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +            K     +  ++LL     GY+ +I++ S+ +         
Sbjct: 63   IIGCEIYVTAGSRFIKDADKKE---KLAHLILLAENNTGYKNIIKICSKSWTEG-YYHKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R     L +   EG+I L+    G + +A      + A K +  +   F  D  ++ LQ 
Sbjct: 119  RADHDLLLKYH-EGVIALSACIGGELPQAVLKGDLEQARKIIRFYMDTFGKDNYFIELQN 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +       + +LA  + L LVATN+  +  ++D  + ++ + ++    +    R R
Sbjct: 178  HGLPEEAAVRPALAELAKEYGLGLVATNDFHYTRKKDAGSQEIKLCISTGNTMDDPGRFR 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + Y K+  EM ++  + P A+ENT  IA RC+         LP F   E +     
Sbjct: 238  FANEEFYCKSGEEMKALLGNFPGAIENTARIAERCNVTFTFGKHKLPSFTVPEGE----T 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR      L  R       +       ++RLD+EL VI +M F+ YFLIV DFIQ+
Sbjct: 294  AATYLRRLCEEALPERYPNYGNKE-------KERLDYELGVINQMGFADYFLIVMDFIQY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + IP+GPGRGS AGS+ +Y L IT++DPLRF LLFERFLNP+R+SMPD D D C   
Sbjct: 347  AKTHGIPIGPGRGSAAGSIVSYLLHITEVDPLRFHLLFERFLNPERISMPDIDTDLCYRG 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R +VI Y+  KYG + VAQIITFG+L A+A +RDVGR L MP  +VDR+ K+IP+ P   
Sbjct: 407  RGQVIEYLAKKYGEDHVAQIITFGTLAARAVIRDVGRVLSMPLREVDRIAKMIPSGPGVT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +    +     F E   +D ++ RL++    LEGL R++ THAAG+VI   P+ + VP+ 
Sbjct: 467  LRT-TLERSKEFAELYASDSNIHRLIDHCLDLEGLSRNSGTHAAGVVICSEPVEEYVPIQ 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
               + +   TQ+     E+ GL+K D LGL+ LT++  +L+ +   RG+ +D+  +P  D
Sbjct: 526  L-TQDNFIQTQYEKDLDEELGLLKMDLLGLRNLTVIHDALEMIKTNRGIALDIEALPHVD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
              T  +L +  T+G+FQ ESSG    L  ++P+C ED+I +V+LYRPGP+ + +   + N
Sbjct: 585  ELTCKMLRSGDTVGVFQSESSGFTSLLMQLEPECFEDLIPMVALYRPGPLGSGMAEDFIN 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+GK  +   HP ++ +LKET G+I+YQEQVMQIA ++ G+SL +AD+LRRAMG K  E
Sbjct: 645  RKHGKTAVDYPHPSLETILKETYGIILYQEQVMQIASVMGGFSLGQADLLRRAMGHKEPE 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  Q++ F+ GA+   IS+ IA  +F+L+  FA YGFNKSH+  Y  I++QTA++K HY
Sbjct: 705  ILQAQRKLFVKGAAVQKISEEIANRVFDLMVHFAGYGFNKSHSVCYGWIAWQTAYLKAHY 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              EF+AA MT    +  K+ ++  D R+  ++I  P VN     F V  + I + LA ++
Sbjct: 765  RPEFMAAMMTCYNGDRNKVSRYISDTRRAGVKIAAPDVNRSEAGFSVNGDTILFGLAGVQ 824

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      I+ A   D  F S+ D   R+DSK LN R  ESL+  GA+D FGY+R QL+
Sbjct: 825  NVGEGIVNSIIGARKKDGAFKSISDLLERIDSKGLNSRACESLIRCGAMDSFGYNRRQLI 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            + L      A     +R +   ++F  E    +  I        +++ + ++E+++LGFY
Sbjct: 885  EVLPQALNNASVTRSDRESGQLSLFGGE--IKAKTIVYPDLPDMSAAEKIDSERKLLGFY 942

Query: 963  FSGHPLDVYKPILRKMG-IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             SGHPLD YK  ++    I           G  + +  ++   +   T+KG+ +G+V+  
Sbjct: 943  VSGHPLDSYKQQMKYCSPIYSLLSDGMKYDGKMVSVGGIITRVKSMTTKKGAPMGYVSLE 1002

Query: 1022 EPAKEYEANFFP 1033
            +     EA  FP
Sbjct: 1003 DYEGAMEAVIFP 1014


>gi|111115407|ref|YP_710025.1| DNA polymerase III subunit alpha [Borrelia afzelii PKo]
 gi|110890681|gb|ABH01849.1| DNA polymerase III, subunit alpha [Borrelia afzelii PKo]
          Length = 1161

 Score = 1038 bits (2683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/1036 (38%), Positives = 608/1036 (58%), Gaps = 25/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 15   MSFRAKFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 74

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +         +           ++LL     GY+ L++L S  YL   
Sbjct: 75   AGIKPIIGIEAYMAKTSKFLKKH--DDLGKMSYHLILLAKNELGYKNLLKLTSISYLEG- 131

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 132  FYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 190

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V+ +    +PL   N+S +++ ED  A D+++ +      S +
Sbjct: 191  ELQRHGIKDQDIVNERLVEYSKELGVPLTVANDSHYVNREDASAQDIIVCIGTGAKKSDE 250

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKEC 300
            +R    T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E 
Sbjct: 251  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIEF 310

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +       L    + GL+ R               + R  +EL+VI RM F GYFLIV
Sbjct: 311  NTLG----EYLEYLTLEGLKFRY-------KTLTSKIKDRAFYELSVIIRMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  ++IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDHDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+AKA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKAKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSISTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+ +L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFKMLGEGRSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAMGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLNQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F     + +       +     + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKRLGQNSLFDVLESQESIQQSFNYQVLKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +         + +A  + + ++ + ++ S +  +T++ + R+ 
Sbjct: 958  LLGFYVSGHPLDPYKKAINNFSSLNVLKDLAAKKDSIVQFSGILNSVKIIQTKRNNSRMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|171318166|ref|ZP_02907332.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MEX-5]
 gi|171096634|gb|EDT41523.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MEX-5]
          Length = 1177

 Score = 1038 bits (2683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1042 (39%), Positives = 606/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F Q+A   G
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNPDD----------RDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL    ++GL+ L+G   G I  AF   + + A +    + K+F    Y+ L
Sbjct: 112  GRAELDASWLDGELSQGLLALSGAQQGDIGLAFAAGNEEAARRHAERWAKVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q   LA +  LP+VAT+ + F++++D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T D Y + + +MV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 232  QKRFTTDQYFRTQDDMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RL Q       +      Y +RL+FE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSKEGLEKRLEQLYPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKADWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLVVLPPDINQSHYRFEPVGEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 828  RSRTIRYGLGAVKGSGQNAIEEILRAREEKPFSDLFDFCERIDRRVVNRRTVEALIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R Q+L S+          +         +F            L      +   
Sbjct: 888  FDSLNANRAQMLASVP--LAMEAAEQAAANAMQAGLF-DMGAESPHAHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   +      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGDL---KEGRDKLVAGIIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      + + + E   F
Sbjct: 1002 RGK-MLIALLDDGSGQCEITIF 1022


>gi|288574785|ref|ZP_06393142.1| DNA polymerase III, alpha subunit [Dethiosulfovibrio peptidovorans
            DSM 11002]
 gi|288570526|gb|EFC92083.1| DNA polymerase III, alpha subunit [Dethiosulfovibrio peptidovorans
            DSM 11002]
          Length = 1145

 Score = 1038 bits (2683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1042 (37%), Positives = 614/1042 (58%), Gaps = 37/1042 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  +FVHL VH+ YSLL+GA+    +  +      PA+AI+D   ++  +EF Q    
Sbjct: 1    MTKEKNFVHLHVHTEYSLLDGAIRCKELARRAKEWGMPAVAISDHGVMYGVIEFYQACKD 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIGC++ +  +       + K     +  ++LL     GY  L++LVS     D 
Sbjct: 61   EGIKPIIGCEIYVAPEG-----IEEKRKENPINHLLLLAENDVGYHNLVKLVSIANT-DG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
                 R+    L    +EG+I  +   +G I +       + A  R   ++ +F  D  +
Sbjct: 115  FYYKPRVDHDLLSRY-SEGIIACSACLAGEIPQLLIAGEDEKALDRANLYRDIFGEDNFF 173

Query: 184  VNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q  H  +       +++++  H  PLVAT +S ++++EDY+ H++L+ V  ++ +  
Sbjct: 174  LEIQYNHIPHQAVVNKGLIEMSRKHGFPLVATTDSHYMNKEDYDWHEILLCVGTNSTLDD 233

Query: 243  KDRPRV-TPDHYLKNRSEMVSIF-SDLPEALENTVEIARRC--SFILQVHAPILPRFIEK 298
              R    T D YL++  EM  IF  D+PEALENT++IA RC  SF L      LP+F   
Sbjct: 234  PKRMSFETNDFYLRSAEEMWQIFGDDVPEALENTLKIAERCDVSFDLGTREYKLPQFDIP 293

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E + +    E+ L   A  GL+ RL    +       +YR+RL++EL+VI +M F GYFL
Sbjct: 294  EGETL----ESFLEKSAFDGLKERLKGAPL-----TDEYRRRLEYELSVINQMGFPGYFL 344

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            I+AD IQ  K+  IP+GPGRGS AGS+ AYA+ IT++DP+++ L+FERFLNP+R++MPD 
Sbjct: 345  IIADVIQACKERGIPIGPGRGSAAGSLVAYAMKITELDPIKYGLIFERFLNPERVTMPDI 404

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D D     R+++++YV  KYG E V+QIITFG ++ KAA++DVGRA+ +PY++VDR+ KL
Sbjct: 405  DTDVSDKGREDLLKYVVEKYGVENVSQIITFGRMKTKAAIKDVGRAMGIPYAEVDRVAKL 464

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +P+         AI+     +E R  DP +  LLE + K+EGL RH S HAAG+VI   P
Sbjct: 465  VPD--GVKSIADAISLTPDLKEIRDKDPKMRTLLESAAKIEGLARHCSQHAAGVVITPMP 522

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVD 597
            L+ LVP+ R +  +  VTQF+M+ +E+ GL+K DFLGL+TL++L+++L+ +        +
Sbjct: 523  LTDLVPV-RKIGENQVVTQFSMEPVERLGLVKMDFLGLQTLSILEEALENIKTNGKEPPN 581

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  T+ +L    TLG+FQLES+GMR+ L+ M PD  ED+IA+++LYRPGP+++
Sbjct: 582  LNELPMDDQSTFKMLQAGDTLGVFQLESAGMRRLLKKMLPDSFEDVIAVLALYRPGPLES 641

Query: 658  IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +   Y   K+G+ K   +HP+++ +LKET GVI+YQEQVM+ A  L+GY+L  AD+LRR
Sbjct: 642  GMLDQYVECKHGRAKAHYLHPMLEDVLKETHGVILYQEQVMKCASTLAGYTLGGADLLRR 701

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  E M++Q+  F+SGA K G+ K  A  IF+++ KFA YGFNKSH+AAYA+ISYQ
Sbjct: 702  AMGKKKVEVMNEQRAIFLSGAEKQGVDKAKADEIFDIIQKFAGYGFNKSHSAAYALISYQ 761

Query: 776  TAWMKTHYPVEFLAASMTLEMD-NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            TA++K HY  EF+AA +T ++    + +  + ++ R+  I ++PP VN     F   +N 
Sbjct: 762  TAYLKAHYDREFMAAYLTSQIGSKKDVMAAYVREVRKSGIPVLPPDVNQSRSAFTAAENV 821

Query: 835  IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L A+  VG+     I++A  +  PF  L DF  RVD + LN+ V+E+L+ AGA D 
Sbjct: 822  IRFGLEAVGKVGSGAVEAIIKAREEGGPFKDLWDFLDRVDVRCLNKGVMENLIKAGAFDS 881

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R QL++S   +  YA   ++       ++F  ++        + +    +   + E
Sbjct: 882  ISPNRRQLMESFPAMMDYAL--KRGCDGDQCSLFGEQEAAV--HPDMVEVEDYDIQEKLE 937

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR--LAAMVVSKQQKKTRK 1011
             E+  +G Y SGHP + Y+    +       +     R   +    A M+V   +K T++
Sbjct: 938  MEKSAIGMYISGHPFERYEEKASRYVNCTISDL-ELWRSEKVSPCFAGMLVESVEKYTKR 996

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  +G + F + + E EA  FP
Sbjct: 997  GEPMGILRFEDCSGEIEAVCFP 1018


>gi|209545459|ref|YP_002277688.1| DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus
            PAl 5]
 gi|209533136|gb|ACI53073.1| DNA polymerase III, alpha subunit [Gluconacetobacter diazotrophicus
            PAl 5]
          Length = 1142

 Score = 1037 bits (2682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/1033 (46%), Positives = 650/1033 (62%), Gaps = 25/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VHS+YSL +GA+ +  I       + PA+AITDT NLF ALEFSQ     G+QP
Sbjct: 5    DFVHLRVHSAYSLSQGAIRIPEIASLAQDMRMPAVAITDTGNLFGALEFSQYCSGKGVQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGCQ        + +  +   P      +VLL     G   L  L S+ +L        
Sbjct: 65   IIGCQ--------VGLPPRNDKPGAPAEPVVLLAQDETGLMNLQYLSSQGFLTGDT-AEP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + L  L E   EGLI+LTGG+ GP+ R           + L      FGDRL V L RH
Sbjct: 116  TVTLDVLCERA-EGLILLTGGTRGPLFRMLADGQQDEVAQWLERLHAAFGDRLAVELHRH 174

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                ++  E  ++ LA    LPLVATN   F   E YEAHD L+ +A    ++++DR RV
Sbjct: 175  GLPVEKAVEPGMIALADRMGLPLVATNECFFPRPEMYEAHDALLCIAQGRTMAERDRWRV 234

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            TP+H+ K  + M  +F+DLPEA +NT+ IARRC+  ++   P+LP   + +       EE
Sbjct: 235  TPEHWFKPPAMMRDLFADLPEACDNTLAIARRCAVRVETRKPLLPVCPKVQ---PGATEE 291

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR  A  GL  RLA+  +      Q YR RL FEL++IA+M F GYF+IVADFIQWAK
Sbjct: 292  QTLRAMAEDGLARRLARMDMDDA-TRQVYRDRLTFELDIIAKMGFPGYFMIVADFIQWAK 350

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             ++IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQDRRD
Sbjct: 351  AHDIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQDRRD 410

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVIRYV+ +YG +RVAQIITFG LQA+AA+RDVGR L +P+  V+++ +LIPN+PA PV+
Sbjct: 411  EVIRYVRGEYGPDRVAQIITFGKLQARAAVRDVGRVLGLPFGMVNKVAELIPNNPAKPVT 470

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L QAI  + R +E R  D ++ RL+EI+ +LEGLYRHASTHAAG+VIGDR L +LVP+YR
Sbjct: 471  LKQAIDGEPRLQEMRDTDEAIRRLMEIALQLEGLYRHASTHAAGVVIGDRQLVELVPLYR 530

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+LQ++  FL    V VDL+ +P DD  
Sbjct: 531  DPKSDMLVTQYNMKFVEQAGLVKFDFLGLTTLTILQRACQFLKGLDVTVDLTTLPLDDAP 590

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L    T G+FQ E +GMR  L+ M+P  +ED+IA V+LYRPGP+ NI  Y  RK+G
Sbjct: 591  TYEMLARGDTGGVFQFEGAGMRDVLKQMRPTRLEDLIAAVALYRPGPMANIPDYCRRKHG 650

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E     H  I  +L+ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+ EMDK
Sbjct: 651  -EAWEPPHEEIRSILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIRAEMDK 709

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+E F  GA   GI    A  +F+L+AKFADYGFNKSHAAAYA++SYQTAWMK ++PV F
Sbjct: 710  QREIFTEGAVGRGIDPEKAAEVFDLMAKFADYGFNKSHAAAYALVSYQTAWMKANHPVPF 769

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAI 842
            LAA M+L  +  +K+    Q+A +  I ++PP +N    DF V     G   I Y+LAA+
Sbjct: 770  LAACMSLAREKTDKLAALRQEAERLGIPVLPPDINASGPDFTVERLADGRLGIRYALAAV 829

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            K VG      ++ +  D+PF  L D  +RVD ++LN+  +E+L  AGA D    +R  + 
Sbjct: 830  KKVGFAAMEALVASRGDRPFADLSDLAARVDPRQLNKMQIENLAKAGAFDTVVPNRALVA 889

Query: 903  QSLDNIQKYAQ-WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             + + + + A    ++  + +             + + L   +      R   E   +GF
Sbjct: 890  AAAETVLRRANTQAQEAASGQIGLFGGGGPTPAPEPLRLPDVTDWPEFERLGMEAEAIGF 949

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            + + HPLD Y  +LR++G        A  +     +++A  VV ++++ TR GS++ WV 
Sbjct: 950  HLTAHPLDSYGLLLRRLGAVRATALEAAAQAGLTRVKIAGCVVDRKERPTRTGSKMAWVR 1009

Query: 1020 FSEPAKEYEANFF 1032
             S+ +   E   F
Sbjct: 1010 LSDSSGGCEVTLF 1022


>gi|82703844|ref|YP_413410.1| DNA polymerase III, alpha subunit [Nitrosospira multiformis ATCC
            25196]
 gi|82411909|gb|ABB76018.1| DNA polymerase III, alpha subunit [Nitrosospira multiformis ATCC
            25196]
          Length = 1174

 Score = 1037 bits (2682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1045 (40%), Positives = 620/1045 (59%), Gaps = 40/1045 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    +F+HL++HS YS+++G + ++  + K  A+  PA+A+TD +NLF  ++F Q+A  
Sbjct: 1    MSAPTTFIHLRLHSEYSVVDGIVRIDEAVAKAVAEGMPALALTDLSNLFGLIKFYQEARN 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PI+GC + I                     I+LL  +  GY  L  L+SR Y  +Q
Sbjct: 61   KGLKPIVGCDVWISN----------DIDRDKSFRILLLCQSYPGYLALCRLLSRAYRENQ 110

Query: 125  GKQSVRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             +    I  SWL   ++GTEGLI L+G + G I  A   N    A      + +LF  R 
Sbjct: 111  YRGRAEIRKSWLSASDLGTEGLIALSGANLGDIGLALIHNDLDQARTLAQEWTELFPGRF 170

Query: 183  YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +QR    +      + + LA    LP+VAT+   +L+ EDY AH+  + ++   V+ 
Sbjct: 171  YIEVQRAGHANAEALVQRSLALAAALRLPVVATHPVQYLNPEDYRAHEARVCISQGYVLG 230

Query: 242  QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             + RP   T + Y K ++EM ++F+D+P AL NT+EIARRC+  L++    LP+F     
Sbjct: 231  DRRRPRHCTEEQYFKTQAEMSALFADIPSALANTMEIARRCNLALELGINRLPQFPTPNN 290

Query: 301  DDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            + +    +  LRN+A  GLE R   L      +      YR RLDFE + I +M F+GYF
Sbjct: 291  ESL----DLYLRNQASTGLEKRMRALFPDPDRRAAEMPKYRARLDFEADTIVQMGFAGYF 346

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK+N++PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPD
Sbjct: 347  LIVADFINWAKQNDVPVGPGRGSGAGSLVAYSLGITDLDPLRYDLLFERFLNPERVSMPD 406

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQD R+ VI YV+ KYG E V+QI TFG++ AKA +RDVGR L +PY+ VD+L K
Sbjct: 407  FDIDFCQDGREHVIEYVKQKYGAESVSQIATFGTMAAKAVVRDVGRVLDLPYNFVDQLAK 466

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+P +    +  +A  ++ +  +   A+  V  LLE++++LEGL R+   HA G++I   
Sbjct: 467  LVPFELGMTLK-KAREEEPQLNQRAEAEEEVRNLLELAERLEGLTRNVGMHAGGVLIAAG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---- 593
             ++   P+Y     +  V+Q +   +EK GL+KFDFLGL+TLT+L  S+ ++ QR     
Sbjct: 526  KITDFCPVYCADGGESVVSQLDKDDVEKVGLVKFDFLGLRTLTILDWSVRYIRQRKSGNT 585

Query: 594  ------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
                      L  +P DD +TY L+     +GIFQ ES GM+  L+  +PD  ED+IALV
Sbjct: 586  GNDSETRSFSLENLPLDDPDTYALMRQGNAVGIFQFESRGMKDLLQKARPDRFEDLIALV 645

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +LYRPGP+  I  +  RK+GK  +  + P + P+L+ T G+++YQEQVMQIAQ++ GYSL
Sbjct: 646  ALYRPGPMSLIPEFIERKHGKRVVEYLDPRLKPILEPTYGIMVYQEQVMQIAQVIGGYSL 705

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM  Q++ F+SGA KNG+++  A  +F+L+ KFA YGFNKSHAA
Sbjct: 706  GSADLLRRAMGKKKPEEMALQRDIFVSGAVKNGLTEGDAAELFDLMEKFAGYGFNKSHAA 765

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA+I++QTA++K HYP EF++A+++ +MD+ +K+  F +D+    + ++PP +N     
Sbjct: 766  AYALIAFQTAYLKAHYPSEFMSATLSADMDDTDKVHIFFEDSIANGLAVLPPDINLSGYR 825

Query: 828  F-KVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F  V +  I Y L AIKG G +    I++A      F  L DFC RVD + +NRRV+ESL
Sbjct: 826  FVPVDEKTIRYGLGAIKGTGESAIAAIIQAREQGGAFSDLFDFCHRVDKRIVNRRVVESL 885

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + AGA D     R  LL S+    + A+  E++      ++F  E G   ++  L K  V
Sbjct: 886  IRAGAFDAIDTHRAALLASVGIALESAEQAERSVN--QVSLFGEEMGVI-ERPALVKVPV 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                   +NE+  LG Y SGHP + Y+  L           V         LA +V + +
Sbjct: 943  WPEKETLKNEKLALGLYLSGHPFNAYREELNHFVRTRLNRLVPQREPQ--LLAGIVYAIR 1000

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEAN 1030
             + TR+G R+G +   + + + E  
Sbjct: 1001 TQVTRRG-RMGVIVLDDGSNQVELV 1024


>gi|216263511|ref|ZP_03435506.1| DNA polymerase III subunit alpha [Borrelia afzelii ACA-1]
 gi|215980355|gb|EEC21176.1| DNA polymerase III subunit alpha [Borrelia afzelii ACA-1]
          Length = 1161

 Score = 1037 bits (2682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1036 (38%), Positives = 607/1036 (58%), Gaps = 25/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 15   MSFRAKFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 74

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +         +           ++LL     GY+ L++L S  YL   
Sbjct: 75   AGIKPIIGIEAYMAKTSKFLKKH--DDLGKMSYHLILLAKNELGYKNLLKLTSISYLEG- 131

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 132  FYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 190

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V+ +    +PL   N+S +++ ED  A D+++ +      S +
Sbjct: 191  ELQRHGIKDQDIVNERLVEYSKELGVPLTVANDSHYVNREDASAQDIIVCIGTGAKKSDE 250

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKEC 300
            +R    T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E 
Sbjct: 251  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIEF 310

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +       L    + GL+ R               + R  +EL+VI RM F GYFLIV
Sbjct: 311  NTLG----EYLEYLTLEGLKFRY-------KTLTSKIKDRAFYELSVIIRMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  ++IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDHDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+AKA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKAKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSISTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+ +L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFKMLGEGRSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHA AY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAVAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAMGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLNQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F     + +       +     + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKRLGQNSLFDVLESQESIQQSFNYQVLKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +         + +A  + + ++ + ++ S +  +T++ + R+ 
Sbjct: 958  LLGFYVSGHPLDPYKKAINNFSSLNVLKDLAAKKDSIVQFSGILNSVKIIQTKRNNSRMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|134296501|ref|YP_001120236.1| DNA polymerase III subunit alpha [Burkholderia vietnamiensis G4]
 gi|134139658|gb|ABO55401.1| DNA polymerase III, alpha subunit [Burkholderia vietnamiensis G4]
          Length = 1177

 Score = 1037 bits (2682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1042 (39%), Positives = 604/1042 (57%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F Q+A   G
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNPDD----------RDKPSRLLLLVKDKTGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL    ++GL+ L+G   G I  A    + + A +    + ++F    Y+ L
Sbjct: 112  GRAELDASWLDGELSQGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAEVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q   LA + +LP+VAT+   F++E+D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAATLAASLQLPVVATHPMQFMTEDDFTAHEARVCISEGDMLANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T   Y + + +MV++F+D+P A+ NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 232  QKRFTTAQYFRTQDDMVALFADIPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RL Q       +      Y +RL+FE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSKEGLEKRLEQLYPDVAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPTKADWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ LL    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPASFQLLKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVTNNLVVLPPDINQSHYRFEPVAQADGT 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L A+KG G      I+ A  +KPF  L DFC RVD + +NRR +E+L+ AGA
Sbjct: 828  RSRTIRYGLGAVKGSGQNAIEEILRAREEKPFADLFDFCERVDRRIVNRRTVEALIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R Q+L S+          +         +F            L      +   
Sbjct: 888  FDSLNPNRAQMLASVP--LAMEAAEQAAANAMQAGLF-DMGAESPHAHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   +      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKVGDL---KEGRDKLVAGIIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      + + + E   F
Sbjct: 1002 RGK-MLIALLDDGSGQCEITIF 1022


>gi|282849948|ref|ZP_06259331.1| putative DNA polymerase III subunit alpha [Veillonella parvula ATCC
            17745]
 gi|282580385|gb|EFB85785.1| putative DNA polymerase III subunit alpha [Veillonella parvula ATCC
            17745]
          Length = 1135

 Score = 1037 bits (2681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1032 (35%), Positives = 601/1032 (58%), Gaps = 27/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ +SLL+G   L +++ +     QPA+AITD  N+++A+ F ++  A G++P
Sbjct: 3    PFVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +                  +  ++LL  T EGY+ L+++VS+        +  
Sbjct: 63   IIGCEVYVTENSRFDRPE--GRSRERLKHLILLAETMEGYRNLVKIVSKASTEGMLYR-P 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R     L++  ++G+I L+    G I +    ++ + A++ +  + + +  D  ++ +Q 
Sbjct: 120  RADRDLLRQY-SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQN 178

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +  + + ++++L+  + L +VA+N+  ++ +ED +A D+ + ++     ++ DR +
Sbjct: 179  HGLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLK 238

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  YLK+  EM  +F  +P A+ENT++IA RC+         LP F   E +     
Sbjct: 239  FPNDEFYLKSGDEMAELFGHIPGAIENTLKIADRCNVEFNFDEHHLPHFDVPEGE----T 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  LR      +           G  +++ ++RLD+EL+VI  M F  YFLIV D++++
Sbjct: 295  SKTYLRKVCEREIPRLY-------GETSEELQKRLDYELDVIGTMGFEDYFLIVWDYVRY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++
Sbjct: 348  AREHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEK 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R + I YV  KYG  RV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+    
Sbjct: 408  RGQAIEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELG-- 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            ++L         ++   +D +V  L +  +KLEG+ R++STHAAG+VI   PL   VP+ 
Sbjct: 466  ITLDKALQGKDLKDLYESDSNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPVQ 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                    VTQ++   IE+ GL+K DFLGL+TLT++  +L  +   RG+ +DL  IP DD
Sbjct: 526  NANDEGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
                 +LT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +V  + +
Sbjct: 585  KAACDILTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFID 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK + 
Sbjct: 645  RRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKES 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  Q+E FI G+  NGI +++A  +F+LL  FA YGFNKSH+AAYA I+YQTA++K HY
Sbjct: 705  VLKAQRESFIQGSINNGIEESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHY 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              EF+AA+MT  M N++K+  +    ++ N++++ P +N     F V D+ I + L  IK
Sbjct: 765  FPEFMAATMTSFMQNMQKLTYYINACKKHNVKVLGPDINYSERSFAVQDDAIRFGLGGIK 824

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      ++        +  + DFC RVD+K +N+R+LESL+  GA+D F  +R QLL
Sbjct: 825  NVGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGAMDGFKENRNQLL 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
               ++ Q      +K+      N+F   +    D I +      +   + ++E+   GFY
Sbjct: 885  HMYESAQAVGAKEQKDAAMGTMNLFGDMEEAV-DFIPVPNVEDLSEDDKLKDEKEYTGFY 943

Query: 963  FSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             +GHPL  Y   L  +  +    E+     G  I    ++ +K  + T++   +  +   
Sbjct: 944  ITGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKSDRMTKRNEVMSILRIE 1003

Query: 1022 EPAKEYEANFFP 1033
            + +       FP
Sbjct: 1004 DYSGAANVVAFP 1015


>gi|162148792|ref|YP_001603253.1| DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus
            PAl 5]
 gi|161787369|emb|CAP56964.1| putative DNA polymerase III subunit alpha [Gluconacetobacter
            diazotrophicus PAl 5]
          Length = 1142

 Score = 1037 bits (2681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/1033 (46%), Positives = 650/1033 (62%), Gaps = 25/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VHS+YSL +GA+ +  I       + PA+AITDT NLF ALEFSQ     G+QP
Sbjct: 5    DFVHLRVHSAYSLSQGAIRIPEIASLAQDMRMPAVAITDTGNLFGALEFSQYCSGKGVQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGCQ        + +  +   P      +VLL     G   L  L S+ +L        
Sbjct: 65   IIGCQ--------VGLPPRNDKPGAPAEPVVLLAQDETGLMNLQYLSSQGFLTGDT-AEP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + L  L E   EGLI+LTGG+ GP+ R           + L      FGDRL V L RH
Sbjct: 116  TVTLDVLCERA-EGLILLTGGTRGPLFRMLADGQQDEVAQWLERLHAAFGDRLAVELHRH 174

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                ++  E  ++ LA    LPLVATN   F   E YEAHD L+ +A    ++++DR RV
Sbjct: 175  GLPVEKAVEPGMIALADRMGLPLVATNECFFPRPEMYEAHDALLCIAQGRTMAERDRWRV 234

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            TP+H+ K  + M  +F+DLPEA +NT+ IARRC+  ++   P+LP   + +       EE
Sbjct: 235  TPEHWFKPPAMMRDLFADLPEACDNTLAIARRCAVRVETRKPLLPVCPKVQ---PGATEE 291

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR  A  GL  RLA+  +      Q YR RL FEL++IA+M F GYF+IVADFIQWAK
Sbjct: 292  QTLRAMAEDGLARRLARMDMDDA-TRQVYRDRLTFELDIIAKMGFPGYFMIVADFIQWAK 350

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             ++IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQDRRD
Sbjct: 351  AHDIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQDRRD 410

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVIRYV+ +YG +RVAQIITFG LQA+AA+RDVGR L +P+  V+++ +LIPN+PA PV+
Sbjct: 411  EVIRYVRGEYGPDRVAQIITFGKLQARAAVRDVGRVLGLPFGMVNKVAELIPNNPAKPVT 470

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L QAI  + R +E R  D ++ RL+EI+ +LEGLYRHASTHAAG+VIGDR L +LVP+YR
Sbjct: 471  LKQAIDGEPRLQEMRDTDEAIRRLMEIALQLEGLYRHASTHAAGVVIGDRQLVELVPLYR 530

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+LQ++  FL    V VDL+ +P DD  
Sbjct: 531  DPKSDMLVTQYNMKFVEQAGLVKFDFLGLTTLTILQRACQFLKGLDVTVDLTTLPLDDAP 590

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L    T G+FQ E +GMR  L+ M+P  +ED+IA V+LYRPGP+ NI  Y  RK+G
Sbjct: 591  TYEMLARGDTGGVFQFEGAGMRDVLKQMRPTRLEDLIAAVALYRPGPMANIPDYCRRKHG 650

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E     H  I  +L+ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+ EMDK
Sbjct: 651  -EAWEPPHEEIRSILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIRAEMDK 709

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+E F  GA   GI    A  +F+L+AKFADYGFNKSHAAAYA++SYQTAWMK ++PV F
Sbjct: 710  QREIFTEGAVGRGIDPEKAAEVFDLMAKFADYGFNKSHAAAYALVSYQTAWMKANHPVPF 769

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAI 842
            LAA M+L  +  +K+    Q+A +  I ++PP +N    DF V     G   I Y+LAA+
Sbjct: 770  LAACMSLAREKTDKLAALRQEAERLGIPVLPPDINASGPDFTVERLADGRLGIRYALAAV 829

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            K VG      ++ +  D+PF  L D  +RVD ++LN+  +E+L  AGA D    +R  + 
Sbjct: 830  KKVGFAAMEALVASRGDRPFADLSDLAARVDPRQLNKMQIENLAKAGAFDTVVPNRALVA 889

Query: 903  QSLDNIQKYAQ-WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             + + + + A    ++  + +             + + L   +      R   E   +GF
Sbjct: 890  AAAETVLRRANTKAQEAASGQIGLFGGGGPTPAPEPLRLPDVTDWPEFERLGMEAEAIGF 949

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            + + HPLD Y  +LR++G        A  +     +++A  VV ++++ TR GS++ WV 
Sbjct: 950  HLTAHPLDSYGLLLRRLGAVRATALEAAAQAGLTRVKIAGCVVDRKERPTRTGSKMAWVR 1009

Query: 1020 FSEPAKEYEANFF 1032
             S+ +   E   F
Sbjct: 1010 LSDSSGGCEVTLF 1022


>gi|224531850|ref|ZP_03672482.1| DNA polymerase III subunit alpha [Borrelia valaisiana VS116]
 gi|224511315|gb|EEF81721.1| DNA polymerase III subunit alpha [Borrelia valaisiana VS116]
          Length = 1161

 Score = 1036 bits (2680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1036 (38%), Positives = 610/1036 (58%), Gaps = 25/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 15   MSFRAKFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 74

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +      K   +          ++LL     GY+ L++L S  YL   
Sbjct: 75   AGIKPIIGIEAYMAKTS--KFLKKQDDLGKMSYHLILLAKNELGYKNLLKLTSISYLEG- 131

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 132  FYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 190

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   ++     ++V+ +    +PL A N+S ++++ED  A D+++ +      S +
Sbjct: 191  ELQRHGIKEQNIVNERLVEYSRELGVPLTAANDSHYVNKEDAVAQDIIVCIGTGAKKSDE 250

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKEC 300
            +R    T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E 
Sbjct: 251  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEF 310

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +       L +  + GL+ R               + R  +EL+VI  M F GYFLIV
Sbjct: 311  NTLG----EYLEHLTLDGLKFRY-------KTLTNKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  ++IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDHDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L++ +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DSPK--VSLKEVLDDNSLKEYFTSKPVYKELMDAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+ +L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFKMLGEGRSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K +A  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEVASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYISFEDFVRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F   +   +       + F   + S     E+ 
Sbjct: 898  TLFENLDQLIEVVSEDKNNKKLGQNSLFDALENQDSIQQSFNYQVFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ A ++   +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAINSFSSLNVLSDLAIKKDSIVQFAGILNLVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|294794627|ref|ZP_06759763.1| DNA polymerase III, alpha subunit [Veillonella sp. 3_1_44]
 gi|294454957|gb|EFG23330.1| DNA polymerase III, alpha subunit [Veillonella sp. 3_1_44]
          Length = 1135

 Score = 1036 bits (2680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1032 (35%), Positives = 600/1032 (58%), Gaps = 27/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ +SLL+G   L +++ +     QPA+AITD  N+++A+ F ++  A G++P
Sbjct: 3    PFVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +                  +  ++LL  T EGY+ L+++VS+        +  
Sbjct: 63   IIGCEVYVTEHSRFDRPE--GRSRERLKHLILLAETMEGYRNLVKIVSKASTEGMLYR-P 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R     L++  ++G+I L+    G I +    ++ + A++ +  + + +  D  ++ +Q 
Sbjct: 120  RADRDLLRQY-SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQN 178

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +  + + ++++L+  + L +VA+N+  ++ +ED +A D+ + ++     ++ DR +
Sbjct: 179  HGLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLK 238

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  YLK+  EM  +F  +P A+ENT++IA RC+         LP F   E +     
Sbjct: 239  FPNDEFYLKSGDEMADLFGHIPGAIENTLKIADRCNVEFNFDEHHLPHFDVPEGE----T 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  LR      +           G  +++ ++RLD+EL+VI  M F  YFLIV D++++
Sbjct: 295  SKTYLRKVCEREIPRLY-------GETSEELQKRLDYELDVIGTMGFEDYFLIVWDYVRY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++
Sbjct: 348  AREHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEK 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R + I YV  KYG  RV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+    
Sbjct: 408  RGQAIEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELG-- 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            ++L         +    +D +V  L +  +KLEG+ R++STHAAG+VI   PL   VP+ 
Sbjct: 466  ITLDKALQGKDLKALYESDSNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPVQ 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                    VTQ++   IE+ GL+K DFLGL+TLT++  +L  +   RG+ +DL  IP DD
Sbjct: 526  NANDEGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
                 LLT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +V  + +
Sbjct: 585  KAACDLLTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFID 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK + 
Sbjct: 645  RRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKES 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  Q+E FI G+  NGI +++A  +F+LL  FA YGFNKSH+AAYA I+YQTA++K HY
Sbjct: 705  VLKAQRESFIQGSINNGIEESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHY 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              EF+AA+MT  M N++K+  +    ++ N++++ P +N     F V D+ I + L  IK
Sbjct: 765  FPEFMAATMTSFMQNMQKLTYYINSCKKHNVKVLGPDINYSERSFAVQDDAIRFGLGGIK 824

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      ++        +  + DFC RVD++ +N+R+LESL+  GA+D F  +R QLL
Sbjct: 825  NVGDNAIDRLIRERNEHGLYTDIVDFCKRVDNRVVNKRLLESLIRCGAMDGFQENRNQLL 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
               ++ Q      +K+      ++F   +    + I +      +   + ++E+   GFY
Sbjct: 885  HMYESAQAVGAKEQKDAAMGTMSLFGDMEEAV-EFIPVPNVEDLSEDDKLKDEKEYTGFY 943

Query: 963  FSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             +GHPL  Y   L  +  +    E+     G  I    ++ +K  + T++   +  +   
Sbjct: 944  ITGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKSDRMTKRNELMSILRIE 1003

Query: 1022 EPAKEYEANFFP 1033
            + +       FP
Sbjct: 1004 DYSGAANVVAFP 1015


>gi|87302218|ref|ZP_01085043.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 5701]
 gi|87283143|gb|EAQ75099.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 5701]
          Length = 1179

 Score = 1036 bits (2679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1059 (36%), Positives = 587/1059 (55%), Gaps = 46/1059 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++  A   PA+A+TD   ++ A+E  +   AAGI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPQMVERAVALGMPALALTDHGVMYGAIELLKLCQAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ +          +G+  +     +V+L     GY+ L++L S  +L     + +
Sbjct: 62   IIGNEMYVINGSIDDPWVKGERRY----HLVVLAKNDTGYRNLVKLTSLSHLRGMRGRGI 117

Query: 130  --RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              R C+   L E   EGLI+ T    G I +A       VA      + + FG   Y+ +
Sbjct: 118  FSRACIDKQLLEQHREGLILATACLGGEIPQAILKGRQDVARDVARWYHQRFGADFYLEI 177

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    DR    ++V++A    + L+ATN++ +LS  D EAHD L+ V    +V+ + R
Sbjct: 178  QDHGSPEDRIVNVELVRIARELGIELIATNDAHYLSSADVEAHDALLCVLTGKLVTDEKR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             R T   Y+K+ +EM  +F+D        EA+ NT  +A +      +    +PRF   +
Sbjct: 238  LRYTGTEYIKSEAEMGRLFADHLEPEVVAEAIANTAAVAEKVEAYDILGRQQMPRFPIPD 297

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                     + L   + AGL  RL  G+         Y +RL FEL V+ +M F  YFL+
Sbjct: 298  G----HTAVSYLAEVSEAGLRQRLHLGSSDP--IDPLYGERLAFELQVMEQMGFPTYFLV 351

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D+I++A++  IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D
Sbjct: 352  VWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDID 411

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
             DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KLI
Sbjct: 412  TDFCIERRGEVIEYVTQRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLI 471

Query: 480  PNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            P     P  L+ +    +    FRE    D  V R +++++++EG  +    HAAG+VI 
Sbjct: 472  PVVRGKPAKLKEMIGPESPAPEFREKYENDAQVRRWVDMARRIEGTNKTFGVHAAGVVIA 531

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
              PL  LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+LD + Q    
Sbjct: 532  AEPLDSLVPLQRN-NDGQVITQYFMEDVEAMGLLKMDFLGLKNLTMIDKTLDLVEQCSGE 590

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            ++D   +P  D +T+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRPGP
Sbjct: 591  RIDPDDLPPCDDDTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGP 650

Query: 655  IDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +D   I  + NRK+G+E I    P ++P+LKET G+++YQEQ+M+IAQ L+GYSL EAD+
Sbjct: 651  LDAGLIPKFINRKHGREAIDFACPALEPILKETYGIMVYQEQIMRIAQDLAGYSLGEADL 710

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK   EM K + +F+ GA+  G+S  +A  +FE +  FA+Y FNKSH+ AY  +
Sbjct: 711  LRRAMGKKKVSEMQKHRSQFVEGATARGVSAAVAEALFEQMVLFAEYCFNKSHSTAYGAV 770

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTA++K HYPV ++AA +T+   + +K++++  + +   I++MPP +N   +DF    
Sbjct: 771  TYQTAYLKAHYPVAYMAALLTVNASSTDKVQRYIANCQAMGIEVMPPDLNASGIDFTPKG 830

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             +I + L+A++ +G    R ++EA   D PF SL D C R+ +  +NRR LESL+  GAL
Sbjct: 831  EKILFGLSAVRNLGDGAIRQLLEARVQDGPFASLADLCDRIPTTLMNRRALESLIHCGAL 890

Query: 892  DCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---------------EKGTF 934
            D      +R QL+  LD +  +A    ++R +   N+F                      
Sbjct: 891  DGLEPSANRAQLMADLDLVLDWASSRARDRASGQGNLFDLFATPGEAAGSAAAEPGPANQ 950

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
            S        +      +   E+ ++GFY S HPL      +R +                
Sbjct: 951  STAPKAAPVADYPPKEKLRLEKELVGFYLSDHPLRQLARPIRMLSPISLGRLEEQADKAR 1010

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + + AM+   +Q  TRKG R+  +   + +   E   FP
Sbjct: 1011 VSVVAMLPEVRQVTTRKGDRMAVLQLEDLSGSAECVVFP 1049


>gi|237747737|ref|ZP_04578217.1| DNA polymerase III alpha subunit [Oxalobacter formigenes OXCC13]
 gi|229379099|gb|EEO29190.1| DNA polymerase III alpha subunit [Oxalobacter formigenes OXCC13]
          Length = 1153

 Score = 1036 bits (2678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/1051 (38%), Positives = 602/1051 (57%), Gaps = 47/1051 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +  FVHL++HS YS+++G + + +++   A D QPA+A+TD  NLF  ++F + A   G
Sbjct: 2    NNTRFVHLRLHSEYSIVDGLVRIEDVIAAAAKDGQPAMALTDLANLFGLIKFYKAARKKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI GC + I                     ++LLV    GY  L EL+SR +L +Q +
Sbjct: 62   VKPIGGCDVWITN----------DADREKPSRLLLLVKDRTGYLNLCELLSRSWLENQWR 111

Query: 127  QSVRICLSWLQEI----GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                I + WL+E+    G  GLI L+G   G I  AF  +    AEK    +  +F D  
Sbjct: 112  GRAEIRIEWLEELSKKTGDMGLIALSGAKQGDIGMAFEASGFDNAEKCARRWASIFPDNF 171

Query: 183  YVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            Y+ +QR  H G ++Y     V+LA   +LP+VAT+   FLS+E++ AH+    ++   ++
Sbjct: 172  YIEIQRTGHSGMEQYLRH-AVELADKLQLPVVATHPVQFLSQEEFAAHEARTCISEGEIL 230

Query: 241  SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            S K R        Y   + EM  +F+DLP A++N+VEIARRC+ +L++    LP F   +
Sbjct: 231  SNKRRAHNFNERQYFYTQEEMAELFADLPGAIQNSVEIARRCNLVLELGHHKLPEFPTPD 290

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
               +    +  L ++A  GLE RL +       +      Y +RLD+E+  I  M FSGY
Sbjct: 291  GMTL----DEFLTSEAKHGLEKRLEELFPDEEERKTQRPRYDERLDYEIGTIINMGFSGY 346

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI+WAK N +PVGPGRGSGAGS+ AY+L IT++DPL ++L+FERFLNP+R+SMP
Sbjct: 347  FLIVADFIRWAKNNGVPVGPGRGSGAGSLVAYSLLITNLDPLAYNLIFERFLNPERVSMP 406

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFCQ  RD+VI+YV+++YG + V+QI TFG++ AKAA+RDVGR L + Y+  D + 
Sbjct: 407  DFDVDFCQHGRDKVIQYVKDRYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFCDGIS 466

Query: 477  KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            KLIP  P   V++ +A  ++    E   ++  V +LL +++++EG+ R+   HA G++I 
Sbjct: 467  KLIPFKPGKQVTIAEAKKEEPLLAEREESEEEVKQLLALAEQVEGITRNVGMHAGGVLIA 526

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---R 592
               L+   P+Y        V+ F+   +E  GL+KFDFLGL TLT+L  ++ ++ Q    
Sbjct: 527  PGKLTDFCPLYTQGGEAGVVSHFDKSDVEAVGLVKFDFLGLTTLTILDLAVKYIRQLDPE 586

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                +L  IP DD  TY LL    T+ +FQLES GM+  L+  +PD  EDIIALV+LYRP
Sbjct: 587  MANFNLDTIPLDDKATYDLLIKAKTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRP 646

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP+D I  +  RK+G EK          +L ET G+++YQEQVMQ+AQ++ GY+L  AD+
Sbjct: 647  GPMDLIPDFCRRKHG-EKFEYPDERTKGILSETYGIMVYQEQVMQMAQVIGGYTLGGADL 705

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK   EM + ++ F  GA+KN +++  A  IF+L+ KFA YGFNKSHAAAYA++
Sbjct: 706  LRRAMGKKDANEMARHRQIFRDGAAKNDLTEAKADEIFDLMEKFAGYGFNKSHAAAYALL 765

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVDFKVG 831
            SYQTA++K H+   F+AA+M+L MD+ +K+K   +DA     + I+PP +N     F   
Sbjct: 766  SYQTAFLKQHHAAAFMAANMSLAMDDTDKVKVLVEDAVEVCGLTILPPDINHSEYYFTPV 825

Query: 832  DNRI----------YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                           Y L A+KG G +    I++A  ++PF  L DFC RVD  ++NRR 
Sbjct: 826  GEAPSVSKKPVSAIRYGLGAVKGSGESAIEAIVKARKERPFTDLFDFCMRVDKHQINRRT 885

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            +ESL+ AGA DCF   R  LL S+D         +   +    ++F  E+   +  +   
Sbjct: 886  IESLIRAGAFDCFNVDRAVLLASVD--LAIEAAEQAEASANQVSLFGEEEAVIN-TVEYV 942

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            +        +   E+ VLGF  SGH  + Y    R+       E   +     +  A ++
Sbjct: 943  QVPHWTEKHKLTEEKGVLGFCLSGHLFNAYAAEARQFAKTRIIELEPSRDPKWV--AGVI 1000

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               + + T++G  +  VT  + +   E   F
Sbjct: 1001 SGNRTQMTQRGKMM-IVTLDDGSGTIEVTIF 1030


>gi|57233855|ref|YP_182167.1| DNA polymerase III, alpha subunit [Dehalococcoides ethenogenes 195]
 gi|57224303|gb|AAW39360.1| DNA polymerase III, alpha subunit [Dehalococcoides ethenogenes 195]
          Length = 1170

 Score = 1036 bits (2678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1038 (36%), Positives = 576/1038 (55%), Gaps = 37/1038 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ +SLL+G   ++ ++ +       A+AITD   +     F ++A  AGI+PI
Sbjct: 2    FCHLHVHTEFSLLDGMCRISQLVARAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +  +   D    T   K        +VLL    +GY  LI+L SR ++        R
Sbjct: 62   LGSEFYLAYGDRTAKTAADK----NYYHLVLLAKNNKGYHNLIQLSSRSHIEG-FYYKPR 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L++  +EGL+ L+   SG + R    N    A +  L +KK F +  Y+ +QRH 
Sbjct: 117  IDKELLEKY-SEGLVCLSACPSGEVPRLILENRFDEAREAALWYKKTF-ENYYIEIQRHP 174

Query: 191  GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     S ++ +A   ++PLVATN++ +L +ED   HD+L+ +  + +VS + R ++ 
Sbjct: 175  MPDLEKINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKME 234

Query: 250  PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D+ YLK+  EM   + D+P+A+ENT +IA  C+  L      LP           K  +
Sbjct: 235  GDYFYLKSPEEMAEAYQDIPDAIENTAKIAEMCNVSLDFGRLHLPEIDIPAG----KTPD 290

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L +    GL              +Q+   RL +EL+VI   +F+ YFL+  D I++ K
Sbjct: 291  EYLADLCYEGLPKFYPDA-------SQEILDRLKYELDVIKTTEFANYFLVTWDIIRFVK 343

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  +  G  RGS A S+  Y L IT +DP+++ L+FERFLN +R  MPD D+DF  DRR+
Sbjct: 344  EKGLYYGV-RGSAASSIVLYCLGITALDPIKYKLVFERFLNIERKEMPDIDMDFQDDRRE 402

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV  KYG + V+QIITFG+L AKAA+RD GRAL M Y+ VDR+ K+IP      + 
Sbjct: 403  EVIEYVVGKYGRDHVSQIITFGTLGAKAAVRDAGRALGMAYADVDRVAKVIPFSLHMTLD 462

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+ + +  ++    D  V  L++ ++K+EGL RHASTHAAG+VI   PL+  VP+ R 
Sbjct: 463  -KAMEESTELKDMYNQDSVVRNLVDAARKIEGLSRHASTHAAGVVISKDPLTDHVPLQRL 521

Query: 549  VRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
             +     L +TQ+ M+ I K GL+K DFLGL  L +L K+   + +     +D   IP D
Sbjct: 522  SKENNLGLVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQDIDPLAIPLD 581

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T+G+FQLE +GMR+ ++ ++P    DI A+V+LYRPGP++ I  +   
Sbjct: 582  DVKTFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIPRFIKS 641

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G E I   HP ++P+L+ET GVI+YQEQV+ IAQ  SGY+L +AD+LR+AMGKKI   
Sbjct: 642  KHGLEPITYPHPALEPILEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKKIAAV 701

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQK  FI GA KNG +  IA  +F L+  FA Y FNK+HA +YA+I+YQTA++K +YP
Sbjct: 702  MQKQKANFIDGALKNGYTPEIAEEVFALVEPFAGYAFNKAHATSYALIAYQTAYLKANYP 761

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSL 839
            VE++ A +    D  EK+     +AR   I+++PP +N   V+F++     G  +I + L
Sbjct: 762  VEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGVNFEIEQNEDGVKKIRFGL 821

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            AA+K VG      I+    A+  + S+ED C R +   LN+RV+ESLV AGALD  G  R
Sbjct: 822  AAVKNVGVAAVEPIVAERKANGEYLSVEDLCRRAEGSSLNKRVMESLVKAGALDSLG-DR 880

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKH---ENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              LL +L NI   AQ  +K + +      ++F  +       + + +  V  +  + + E
Sbjct: 881  GTLLFNLPNILSLAQREQKLKDSNQTTMFDLFGQQSPMPMPSLEMAESPV-TTREKLQWE 939

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            + ++G + S HP   Y    +++      +    +    + +A MV S +   TR+G   
Sbjct: 940  KELVGIFISEHPFTPYASAAQEVTTALCGQIDEELDNQPVTVAGMVASVRVSATREGKPF 999

Query: 1016 GWVTFSEPAKEYEANFFP 1033
                  +     E   +P
Sbjct: 1000 VMAEIEDLVGRVEVAAWP 1017


>gi|295689601|ref|YP_003593294.1| DNA polymerase III subunit alpha [Caulobacter segnis ATCC 21756]
 gi|295431504|gb|ADG10676.1| DNA polymerase III, alpha subunit [Caulobacter segnis ATCC 21756]
          Length = 1143

 Score = 1036 bits (2678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 498/1032 (48%), Positives = 687/1032 (66%), Gaps = 20/1032 (1%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            ++  FVHL+V S+YSLLEGA+  + I    AA   PA  + D  NLF ALE+S  A  AG
Sbjct: 5    EADGFVHLRVRSAYSLLEGAIKADQIGKLAAAAGMPAAGLADRANLFGALEYSSYAKDAG 64

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +QPIIGC L +     + +       +   P+++LL    +GY  L EL S  YL     
Sbjct: 65   VQPIIGCALPV-----VGIGGGPTERWARAPTVMLLAQNEQGYLNLSELSSIAYLDSAEL 119

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  + + E  ++GLI+L+GG+ GP+D  F    +  A   L    ++FGDR YV L
Sbjct: 120  PEPVVPWAKVVEY-SDGLILLSGGTDGPVDALFAAGKAAEASAALAEMHRVFGDRFYVEL 178

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH    +   E  +V  AY +++PLVATN+  F   + YEAHD L+ +A    V Q +R
Sbjct: 179  QRHGLPKQAAAEPGLVNWAYENDVPLVATNDVYFAKSQFYEAHDALLCIADGAFVGQDER 238

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             RVT +H+ K  ++M  +F+DLPEA +NT++IARRC+F++   APILP F   +     +
Sbjct: 239  RRVTSEHWFKPPADMRKLFADLPEACDNTLDIARRCAFMVHKRAPILPSFPTGDG----R 294

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E  ELR++A  GL++RL    +      ++Y +RL+FEL++I +M F GYFLIV+DFI+
Sbjct: 295  NEAEELRHQAREGLKMRL--DGLTLSAPEEEYWKRLEFELDIIEKMGFPGYFLIVSDFIK 352

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            W K + IPVGPGRGSGAGS+ A+ LTITD+DPLRF LLFERFLNP+R+SMPDFD+DFCQ+
Sbjct: 353  WGKAHGIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQE 412

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI YVQ KYG +RVAQIITFGSLQA+A LRDVGR +Q+P   VDRLCK++PN+PA 
Sbjct: 413  RREEVISYVQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGLVDRLCKMVPNNPAA 472

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            PV+L QAI  + R R+AR  D +V   L ++ +LEGL+R+ASTHAAG+VIGDRPL+QL P
Sbjct: 473  PVTLAQAIDIEPRLRQARDEDANVANCLNVALQLEGLFRNASTHAAGVVIGDRPLTQLTP 532

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +Y+D RSDLP TQFNMKW+E AGL+KFDFLGLKTLT+L +++  L +RG ++DL  +PFD
Sbjct: 533  LYKDPRSDLPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAVKHLKKRGFEIDLGKLPFD 592

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY LL +  T+G+FQLES GMR  L  M+   IE+I AL+SLYRPGP+DNI  + + 
Sbjct: 593  DTKTYELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDNIDTFVDC 652

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K G++ + ++HP ++ +LKET GVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKK KEE
Sbjct: 653  KFGRKPVDTLHPSLEGVLKETYGVIVYQEQVMQIAQILAGYSLGEADLLRRAMGKKKKEE 712

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MD QK RF+SGA +  + +  + +IFEL+AKFA YGFNKSHAAAYA ISYQTAW+K + P
Sbjct: 713  MDLQKIRFVSGAKEKNVPEEQSGSIFELVAKFAGYGFNKSHAAAYAFISYQTAWLKANTP 772

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEF AASM+L++ N +K+  F QDAR+F I +  P VN    DF+V +  + Y+L AI+ 
Sbjct: 773  VEFFAASMSLDLSNTDKLAVFHQDARRFGITVRAPDVNRSGADFEVENGEVLYALGAIRN 832

Query: 845  VGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG    +H++    +  PF  + DF  R+D +++N+R +E+L  AGA D F  +R Q++ 
Sbjct: 833  VGLDAMKHLVAVREEGGPFRDIFDFVERIDPRQVNKRAIENLARAGAFDSFHKNRAQIVA 892

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            S D +  +AQ    +R      +F  + G  + +  L K    N     + E   +GFY 
Sbjct: 893  SADVLIAHAQSCHADRQGGQGGLFGSDPG--AGRPRLAKTENWNQVDLLDEELSAVGFYL 950

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            +GHPL+    +LR+       E++     G    R+  MV  +Q++ ++ G +  +V+ S
Sbjct: 951  TGHPLEDMVGMLRRRRTAMLAEAMVQAEAGMEAFRMCGMVRRRQERASQSGEKFAFVSLS 1010

Query: 1022 EPAKEYEANFFP 1033
            +P  EYE   FP
Sbjct: 1011 DPTGEYEV-LFP 1021


>gi|78067124|ref|YP_369893.1| DNA polymerase III subunit alpha [Burkholderia sp. 383]
 gi|77967869|gb|ABB09249.1| DNA polymerase III, alpha subunit [Burkholderia sp. 383]
          Length = 1176

 Score = 1036 bits (2678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1042 (39%), Positives = 607/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + +++I+   AAD Q A+A+TD  N F  + F Q+A   G
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWIANPDD----------RDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL    ++GL+ L+G   G I  A    + + A +    + K+F    Y+ L
Sbjct: 112  GRAELDASWLDGELSQGLLALSGAQQGDIGLALAAGNEEAARRHAERWAKVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q   LA   +LP+VAT+ + F++++D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAATLAAALKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T D Y + + +M ++F+DLP A+ NTVE+A+RC+  L++  P LP F   +   + 
Sbjct: 232  QKRFTTDQYFRTQDDMAALFADLPSAIANTVEVAKRCNLKLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRLAQGAIA---KGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RLAQ   A   +      Y +RL+FE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSKEGLETRLAQLYPAEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWA 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+ NG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHREIFAEGAATNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L A+KG G      I+ A  +K F  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 828  RSRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QL+ S+    + A   E N       +F            L      +   
Sbjct: 888  FDSLNTNRAQLIASVPLAMEAADQAEANAM--QAGLF-DMGAESPHAHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   +      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKVGDL---KEGRDKLVAGIIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      + + + E   F
Sbjct: 1002 RGK-MLIALLDDGSGQCEITIF 1022


>gi|46202448|ref|ZP_00208519.1| COG0587: DNA polymerase III, alpha subunit [Magnetospirillum
            magnetotacticum MS-1]
          Length = 1115

 Score = 1036 bits (2678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 483/1008 (47%), Positives = 672/1008 (66%), Gaps = 31/1008 (3%)

Query: 44   IAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
            + I+DT NLF ALEFS     AGIQPI+G Q+ I  +D    +  G+ P P    +VLL 
Sbjct: 1    MGISDTGNLFGALEFSTSCSDAGIQPIVGAQIAIRREDG-GPSKDGRKPEPDT--LVLLC 57

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
                GY  L++LVS+ +L     ++ ++ L  L E  ++GLI+LTGG +GP+ R      
Sbjct: 58   QNEAGYLNLLKLVSKAFLETDAGETPQVTLHDL-ETRSDGLIILTGGPAGPVGRLLADGQ 116

Query: 164  SQVAEKRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSE 222
            ++ AE  L    + F  R YV + RH+   +   E  +V LAY H+LPLVATN + F   
Sbjct: 117  AEKAEIVLARLARAFAGRCYVEIMRHKLEVEDRIEPMLVSLAYKHDLPLVATNEAFFADR 176

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
              YEAHD L+ +A    +SQ +R R+TP+HY K+  EM ++F+DLPEA +NT+ IARRC+
Sbjct: 177  GMYEAHDALVCIAEGAYISQDERRRLTPEHYFKSPQEMRALFADLPEACDNTLVIARRCA 236

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD------ 336
            F +    PILP +           E   LR K + GL+ RLA+     G    +      
Sbjct: 237  FGVAKRKPILPPYRMD-----GLTEAEVLRKKTLEGLDDRLAKHVFKDGMTDDEKDHAAK 291

Query: 337  -YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
             YR+R++FEL VI +M F GYFLIV+DFIQW+K + IPVGPGRGSGAGS  A+ALTITD+
Sbjct: 292  PYRERIEFELGVIEQMGFPGYFLIVSDFIQWSKAHEIPVGPGRGSGAGSAVAWALTITDL 351

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DPLR+ LLFERFLNP+R+SMPDFDIDFCQDRR+E IRYVQ KYG+ +VAQIITFG LQA+
Sbjct: 352  DPLRWGLLFERFLNPERVSMPDFDIDFCQDRREETIRYVQAKYGYSQVAQIITFGKLQAR 411

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEI 514
            A LRDVGR LQMPY QVDR+CKL+PN+PA+P++L QA+ ++   +E +  D +V  L+++
Sbjct: 412  AVLRDVGRVLQMPYGQVDRICKLVPNNPANPMTLEQALENEPLLKEQKERDETVSHLIDL 471

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            + KLEGLYRHASTHAAG+VIGDRPL +LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFL
Sbjct: 472  AMKLEGLYRHASTHAAGVVIGDRPLDELVPLYRDPRSDMPVTQFNMKWVESAGLVKFDFL 531

Query: 575  GLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GLKTLT++  ++  + + +G+ +DLS IP DD ++Y LL+     G+FQLESSGMR  L 
Sbjct: 532  GLKTLTVMVTAVKHVKKSKGIDIDLSAIPLDDAKSYELLSRGDAAGVFQLESSGMRDVLR 591

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
             M P+ +ED+IA+V+LYRPGP+D I  Y   K+GKE+   +HPL++P+LKET G+++YQE
Sbjct: 592  KMGPNRLEDLIAVVALYRPGPMDQIPRYIACKHGKEEPDYMHPLLEPILKETFGIMVYQE 651

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQIAQ+LSGYSL  AD+LRRAMGKK +EEMD+Q+ +F+ GA+   +    A  IF+ +
Sbjct: 652  QVMQIAQVLSGYSLGGADLLRRAMGKKDREEMDRQRAKFVEGATARAVDGGQASMIFDKV 711

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
            AKFA+YGFNKSHAAAYA+I+YQTAW+K +YP EF+AA+MT EM N +K+  F Q+  +  
Sbjct: 712  AKFAEYGFNKSHAAAYALIAYQTAWLKANYPAEFMAATMTYEMSNTDKLNSFRQELDRLG 771

Query: 814  IQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLED 867
            I+++PP +N+    F V     G + + Y+LAA+K VG    + ++E       F  + D
Sbjct: 772  IKLLPPDINSSQPTFSVELLPDGGSAVRYALAALKNVGEAAMKSLVEERDRGGRFKDMGD 831

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F +R+DSK LNRR LE++V AG  D    +R +L ++ D + +YA    ++R +   ++ 
Sbjct: 832  FAARMDSKVLNRRQLENMVKAGVFDSIDKNRGRLFKNADTLCRYAAQAAEDRQSSQMSLL 891

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                G+ +  + LE     +   +   E   +GFY S HPLD Y   ++++ +    E  
Sbjct: 892  G---GSNAPTLKLESGPDWSPHEKLNQEFEAVGFYLSAHPLDAYAKSMKRLNVLKIAELP 948

Query: 988  ATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++      +RLA  ++SKQ++ + KGSR  ++ FS+ +  +E   F
Sbjct: 949  RHLQSGGKGRVRLAGSLLSKQERVSAKGSRYAFLQFSDASGMFEVTCF 996


>gi|253996658|ref|YP_003048722.1| DNA polymerase III subunit alpha [Methylotenera mobilis JLW8]
 gi|253983337|gb|ACT48195.1| DNA polymerase III, alpha subunit [Methylotenera mobilis JLW8]
          Length = 1160

 Score = 1035 bits (2677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1040 (41%), Positives = 628/1040 (60%), Gaps = 38/1040 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SPSFVHL+ HS YS+++G + +++ + +  +D+ PA+A+TD +NLF A++F + A   G+
Sbjct: 11   SPSFVHLRCHSEYSVVDGIVRIDDYVKQAVSDKMPALALTDLSNLFGAVKFYKAARGKGV 70

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC + ++  +N ++             ++LL  +  GY  L  L+SR YL +Q + 
Sbjct: 71   KPIIGCDIWLENTENREL----------PSRLLLLCQSHTGYLTLCHLLSRAYLTNQYRG 120

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                  +W  E GTEGL++L+GG +G + +A    +  +A+K    +++LF +R Y+ +Q
Sbjct: 121  RAEFKRAWFAEAGTEGLLLLSGGLAGDVGQACAQGNVVLAKKLANEWQQLFPERFYLEVQ 180

Query: 188  R-----HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            R      +  +      V  +A+   LP+VAT+   F S +DY AH+    +A   V++ 
Sbjct: 181  RIATDAGKASEEMYIQHVRHIAHELSLPIVATHPIQFTSPDDYRAHEARTCIAEGYVLAD 240

Query: 243  KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            K RP+  T + Y K ++++ ++F+D+PEAL N+VEIA+RC+  L +    LP+F     +
Sbjct: 241  KRRPQNFTTEQYFKTQADIAALFADMPEALANSVEIAKRCNLSLTLGKNYLPQFPTPNNE 300

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
             +     + L ++A  GL  RL         +      Y  RLDFE NVI +M F+GYFL
Sbjct: 301  SLN----DYLISEARLGLAKRLEVLFPNEEVRASKQDVYAARLDFETNVINQMGFAGYFL 356

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFI WAK N +PVGPGRGSGAGSV AY+L ITD+DPL ++LLFERFLNPDR+SMPDF
Sbjct: 357  IVADFINWAKNNGVPVGPGRGSGAGSVVAYSLGITDLDPLEYNLLFERFLNPDRVSMPDF 416

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFCQ+ RD VI YV+ KYG + V+QI TFG++ AKA +RDVGR L +P++ VD + KL
Sbjct: 417  DIDFCQEGRDRVIDYVKQKYGIDAVSQIATFGTMAAKAVIRDVGRVLDLPFNFVDGIAKL 476

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP +    +S  A+  + +  E R  +  V  LLE++ +LEGL R+   HA G++I    
Sbjct: 477  IPLELGITLS-DALEKEPQLAERRENEEEVKELLELALRLEGLVRNIGMHAGGVLISPSK 535

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            ++   P+Y        V+Q++   +E  GL+KFDFLGL+TLT+L  +L+   ++  + +L
Sbjct: 536  IADFSPVYCQPDGASLVSQYDKDDVEAVGLVKFDFLGLRTLTILDMALENANKQRAEREL 595

Query: 599  -----SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                   +P DD  T+ LL T  T  +FQLES GM+  L+   PDC EDIIALV+LYRPG
Sbjct: 596  PPLFFETLPIDDKPTFQLLKTANTTAVFQLESRGMKDMLKQAMPDCFEDIIALVALYRPG 655

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  Y  RK+GK+++   HPL +P+LKET G+ +YQEQVMQIAQ+++GYSL  AD+L
Sbjct: 656  PMDLIPDYCRRKHGKQRVEYPHPLTEPILKETYGIAVYQEQVMQIAQVVAGYSLGGADLL 715

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK KEEMD Q++ F  GA+KN +++  A ++F+LL KFA YGFNKSHAAAYA+++
Sbjct: 716  RRAMGKKKKEEMDAQRKIFTEGATKNNMTEQQASDLFDLLEKFAGYGFNKSHAAAYALVA 775

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGD 832
            Y TA++KTHYP  FLAA+M+ +M+N + +  F  D     ++++PP VN     FK V  
Sbjct: 776  YHTAYLKTHYPAAFLAATMSADMNNTDSVHIFYDDCAPNQVEVLPPDVNESEFKFKPVSK 835

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            N+I Y L A+KG G+     I++A A D PF SL DFCSR+D +K+NRRV+ESL+ AGA 
Sbjct: 836  NQILYGLGAVKGTGSAAIDVILQARAKDGPFTSLFDFCSRLDLRKVNRRVIESLIRAGAF 895

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R  LL  +      A+    N  +   ++F            L   +      R
Sbjct: 896  DKLEPNRHALLAGVALAISAAEQT--NANSNQNSLFGEASDQS--VHVLPNVTPWPEQQR 951

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
             + E+  LGFYFSGHP   Y+  L +             +     LA +V   + + T +
Sbjct: 952  LQEEKIALGFYFSGHPYWSYQKDLSQFISTTLANLA--PKEQPQLLAGIVSGVRVRMTAR 1009

Query: 1012 GSRIGWVTFSEPAKEYEANF 1031
            G  +  V   +     E   
Sbjct: 1010 GK-MAIVGLDDGTTRIEVVV 1028


>gi|108803937|ref|YP_643874.1| DNA polymerase III catalytic subunit, DnaE type [Rubrobacter
            xylanophilus DSM 9941]
 gi|108765180|gb|ABG04062.1| DNA polymerase III catalytic subunit, DnaE type [Rubrobacter
            xylanophilus DSM 9941]
          Length = 1165

 Score = 1035 bits (2677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1045 (34%), Positives = 559/1045 (53%), Gaps = 40/1045 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL  HS YS+L+GA  + +++     +  P IA+TD  N++ A+ F Q+A  AGI+P+
Sbjct: 8    FAHLHCHSEYSMLDGASRIRDLVAFAREEGMPGIALTDHGNMYGAVRFYQEATKAGIKPV 67

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +        T            + LL  T EGY+ L++L +  +L        R
Sbjct: 68   MGCEVYVTE----WGTPMSDRSRSRYYHLTLLARTPEGYKNLMKLSTAGFLHG-FYYKPR 122

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    L+     G+I L+G  S  +           A + LL + ++F D +Y+ +Q H 
Sbjct: 123  VDARTLRR-HGRGIICLSGCLSAEVPARILEGRLDRARELLLEYAEIF-DAVYLEMQDHG 180

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              ++ R ++ +++L     LPLVATN+S + +  D   HDVL+ +      +  +R R  
Sbjct: 181  LEEQRRVNRGLLRLHRETGLPLVATNDSHYTARSDARMHDVLLCIGTGKFYNDPNRMRFH 240

Query: 250  PDHYL-KNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRFIEKECDDIQKEE 307
             + +  K   EM  +F+D PEALENT  + R      +++    LP F + E        
Sbjct: 241  GEEFYVKPVEEMARLFADHPEALENTAGVVRSVEGPGIELGKTRLPNFPKPEG----YTG 296

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     GL  R       +     + R+RLDFEL  IARM F  YFLIV DF+++A
Sbjct: 297  SQYLRELCERGLRKRY-----GRRASDPEVRRRLDFELETIARMGFEDYFLIVWDFVKYA 351

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K   I VGPGRGS AGS+ AYAL ITD+DPL++SLLFERFLNPDR+SMPD DIDF    R
Sbjct: 352  KDRGIAVGPGRGSAAGSIVAYALEITDLDPLQYSLLFERFLNPDRISMPDVDIDFSVAGR 411

Query: 428  DEVIRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
             EV+RYV  KYG HE VAQIITFG++ AKAA+RD  R  Q PY++ D+L KLIP  P   
Sbjct: 412  SEVMRYVTEKYGGHEHVAQIITFGTIGAKAAIRDAARIFQYPYAETDKLAKLIPEKPVGT 471

Query: 487  V---------------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                            + +              D +  R+L+ + ++EG  RHA THAAG
Sbjct: 472  TLKDVLRRTGDGRYEPTEKHPGAAREILRFVERDEAAKRVLDTAFEIEGYARHAGTHAAG 531

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            +VI + PL+ +VP+ R  + +  V  Q  M  +E  GL+K DFLGL+ L +++++L  + 
Sbjct: 532  VVISEEPLTDIVPLQRVAKDESSVMVQHPMSDVEALGLLKVDFLGLRNLDVIEETLRIVR 591

Query: 591  QRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            +    ++++  IP DD ET  L     T G+FQ ESSGM++ L+ ++PD  +D++AL +L
Sbjct: 592  ETTGERINIREIPLDDEETLKLFARGDTFGVFQFESSGMQRMLQEVRPDRFDDLVALNAL 651

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP+D I  +   K+  E +    P + P+L+ T GV  YQEQ+M+I+++L G++  E
Sbjct: 652  YRPGPMDYIPNFKKGKHDPESVRYPDPRLKPILEPTYGVAAYQEQLMEISKVLGGFTPGE 711

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD LR+A+GKK K+ +   +++F+ G  +NG+   +A  ++E + K   Y FNKSH+A Y
Sbjct: 712  ADTLRKAIGKKKKDILATLRDKFMRGCEENGVEPGVARELWEWMEKAGGYSFNKSHSACY 771

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            + +++QTA++K HYP  ++AA ++  M+  +++ ++  +AR   I+++PP VN     F 
Sbjct: 772  SFLAFQTAYLKAHYPTAYMAALLSSVMNTKDRVPQYVAEARAMGIEVLPPDVNESGKRFT 831

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V  + I + L+A+K VG  T   I+ +  +  PF  + DFC RVD    N+R LESL+  
Sbjct: 832  VVGDTIRFGLSAVKNVGDNTVEAILASREEGGPFRDIFDFCERVDPSTYNKRTLESLIKC 891

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D  G+SR  +L       +      +  +     +F   +   +        + ++ 
Sbjct: 892  GAFDRTGHSRSAMLAVHTEAVERVSRGRRASSESQFAMFDLAE--VAPPRPEVPATPDDP 949

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
                E E+  LG + S HPL      LRK       E      G  + +A +  S +   
Sbjct: 950  RRNLEWEKETLGLFVSDHPLRPVMHKLRKHVDLSLSELDGRQDGAVVCVAGLATSVRVST 1009

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            TRKG  +  +   +     E   FP
Sbjct: 1010 TRKGETMAVLQLDDTRGMAEVLVFP 1034


>gi|14194701|sp|Q9XDH5|DPO3A_THEAQ RecName: Full=DNA polymerase III subunit alpha
 gi|116667773|pdb|2HPI|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are
            Not Homologous: X-Ray Structure Of Dna Polymerase Iii
 gi|116667774|pdb|2HPM|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are
            Not Homologous: X-Ray Structure Of Dna Polymerase Iii
 gi|5531686|gb|AAD44403.1| DNA polymerase III [Thermus aquaticus]
          Length = 1220

 Score = 1035 bits (2677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 434/1100 (39%), Positives = 616/1100 (56%), Gaps = 90/1100 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAAD--QQPAIAITDTNNLFSALEFSQKA 62
            +     F HL  H+ +SLL+GA  L ++L  +     + PA+A+TD  NLF A+EF +KA
Sbjct: 1    MGSKLKFAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKA 60

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
             A G++PIIG +  +  +       +GK        + LL     GYQ L+ L SR YL 
Sbjct: 61   TAMGVKPIIGYEAYVAAESRFDR-KRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYLE 119

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                +  RI    L+E   +GLI L+G     I +    +   +AE RL     +FGDR 
Sbjct: 120  G-FYEKPRIDREILRE-HAQGLIALSGCLGAEIPQFILQDRLDLAEARLNEDLSIFGDRF 177

Query: 183  YVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ +Q H   ++ + +QV+ + A  + L +VATN+  ++ +ED  AH+VL+A+   T + 
Sbjct: 178  FIEIQNHGLPEQKKVNQVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTTLD 237

Query: 242  QKDRPRVTPDHYL-KNRSEMVSIFSDLPEA------LENTVEIARRCSFILQVHA---PI 291
              +R R   D +  K   EM ++   LPEA       +NTVEIAR C   L +       
Sbjct: 238  DPERWRFPCDEFYVKTPEEMRAM---LPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYR 294

Query: 292  LPRFIEKECDDIQKEEENELRN-------------------------------------- 313
            +PRF   E     + E   LR                                       
Sbjct: 295  IPRFPLPEG----RTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERAL 350

Query: 314  ---------KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                     KA   L  RL      + + A+    R  +EL+VI RM F GYFLIV D+I
Sbjct: 351  AEALARVEEKAWEELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYI 410

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WA+ + + VGPGRGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF  
Sbjct: 411  NWARGHGVSVGPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSD 470

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
              RD VI+YV+ +YG ++VAQI TFGSL +KAAL+DV R   +P+ + + L KLIP    
Sbjct: 471  RERDRVIQYVRERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFG 530

Query: 485  HPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             P  LQ AI      R     D  + +++E++ +LEGL RHAS HAAG+VI   PL+ LV
Sbjct: 531  KPKPLQEAIQVVPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLV 590

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+ RD +   PVTQ++M  +E  GL+K DFLGL+TLT L ++   + + +GV++D   +P
Sbjct: 591  PLMRD-QEGRPVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVELDYDRLP 649

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +T+ LL+   T G+FQLES GM   + G++P  +EDIIALVSLYRPGP+++I  Y 
Sbjct: 650  LDDPKTFELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYI 709

Query: 663  NRKNGKEKIVS---IHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
             R +G+E +      H    + P+L ET G+ +YQEQ+MQIA  ++GYSL EAD+LRRAM
Sbjct: 710  RRHHGQEPVSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAM 769

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +ERF+ GA + G+ +  A  +F++L  FA+YGFNKSHAAAY+++SYQTA
Sbjct: 770  GKKRVEEMQKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTA 829

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYPVEF+AA +++E  + +K+ ++ +DAR   I ++PP VN    DFKV    I +
Sbjct: 830  YVKAHYPVEFMAALLSVERHDSDKVAEYIRDARALGIPVLPPDVNRSGFDFKVVGEEILF 889

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+A+K VG   AR I+E      PF SL DF  R+  + +N+R LESLV AGALD FG 
Sbjct: 890  GLSAVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDAFG- 948

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R +LL SL+ + ++A    +   +    +FA       ++  L + S  +       E+
Sbjct: 949  DRARLLASLEPLLRWAAETRERGRSGLVGLFAEV-----EEPPLVEASPLDEITMLRYEK 1003

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR---GN-NIRLAAMVVSKQQKKTRKG 1012
              LG Y SGHP+  Y P LR++     EE    +R   G   + L+ MV    +K TR G
Sbjct: 1004 EALGIYVSGHPVLRY-PGLREVASCTIEELSEFVRELPGKPKVLLSGMVEEVVRKPTRSG 1062

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
              +   T S+     E   F
Sbjct: 1063 GMMARFTLSDETGALEVVVF 1082


>gi|300814414|ref|ZP_07094685.1| DNA polymerase III, alpha subunit [Peptoniphilus sp. oral taxon 836
            str. F0141]
 gi|300511522|gb|EFK38751.1| DNA polymerase III, alpha subunit [Peptoniphilus sp. oral taxon 836
            str. F0141]
          Length = 1145

 Score = 1035 bits (2677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1046 (35%), Positives = 581/1046 (55%), Gaps = 47/1046 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F+HL VHS YSLL+ +  +  I  +       A+A+TD  N++ A++F +     G++P
Sbjct: 3    NFIHLHVHSEYSLLDASTKIEEIPVRAKELGMKAVALTDHGNMYGAIDFYKACKKVGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +         +        +VLL    +G + L+++VS  ++ D      
Sbjct: 63   IIGCEIYVSQKSLYLKDRTNER-----YHLVLLAENNQGLKNLMKIVSIAFV-DGYYYKP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+ L  L++  ++G+I  +   +G + R         A+K  L ++ +F  D  ++ LQ 
Sbjct: 117  RVDLDVLKKY-SKGIIATSACLAGEVQRLIQRRDYDEAKKAALRYRDIFGKDNFFLELQD 175

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ R   ++ +L+    + L  +N+  +L +ED +A DVL+ +     +  + R +
Sbjct: 176  HGIPEQKRVNRELNRLSKETGISLSCSNDVHYLKKEDAKATDVLLCIQTGAKIKDEKRMK 235

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               +  YLK+  EM +IFSD  +A+ NT  IA RC+   +     LP F           
Sbjct: 236  FPTEEFYLKSAEEMENIFSDNLDAINNTGIIADRCNVDFEFGHYHLPEFKVPSG----YT 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+ L   A  GL  R            +  + R + E   I +M F  YFLIV DFI +
Sbjct: 292  NESYLEKLAKEGLNKRY-------KVIDKKIKDRFNMEFQTITQMGFVDYFLIVWDFINY 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             KKNNI VGPGRGS AGS+ +Y L I DIDPL+F LLFERFLN +R+SMPD DIDFC +R
Sbjct: 345  VKKNNIQVGPGRGSAAGSIISYGLGIIDIDPLKFDLLFERFLNKERVSMPDIDIDFCYER 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI YV  KYG ERVAQI+TFG++Q++ A+RDVGR L + YS+VD + K +P+     
Sbjct: 405  REEVIDYVCEKYGDERVAQIVTFGTMQSRQAIRDVGRVLDIAYSRVDYIAKQVPHALKMT 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+     F+E    D     L++I++++EGL RH STHAAG+VI   PL+  VP+ 
Sbjct: 465  LD-KALDISESFKELYEKDKEARNLIDIAKRIEGLPRHTSTHAAGVVISKNPLTDYVPLT 523

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            R     +  TQFNM  +E+ GL+K DFLGL+TLT+L+ ++  +     VK+D S   +DD
Sbjct: 524  R--NDQIIATQFNMIQLEELGLLKMDFLGLRTLTVLRDAISLVYDNYKVKIDFSEFTYDD 581

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +   +     TLG+FQ ESSGMR  L+ ++PD   D++A  +L+RPGP+  I  +   K
Sbjct: 582  EKVLKMFAKAETLGVFQFESSGMRLFLKELKPDAFSDLVAANALFRPGPMKQIPKFIESK 641

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            + K KI  IHP+++P+LK+T G I+YQEQVMQI Q++ GYSL  AD++RRA+ KK    M
Sbjct: 642  HDKSKISYIHPILEPILKDTYGCIVYQEQVMQIVQIVGGYSLGRADIVRRAISKKKMAVM 701

Query: 726  DKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +++++ FI G  K        NG+ +  A  I++L+  FADY FNKSH+ AY+VI+Y++A
Sbjct: 702  EEERKNFIYGNEKDNVCGAIRNGVDEKSANEIYDLIIDFADYAFNKSHSVAYSVIAYRSA 761

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K +YP EF+AA ++    +++++  + ++ ++  I ++PP+VN    +F V   +I +
Sbjct: 762  WIKYYYPREFMAAQISTYTSDIKQVSLYIEELKRLGIGLLPPNVNYSQKNFTVEGKKIRF 821

Query: 838  SLAAIKGVGTTTARHIMEASAD-KPFDSLEDF---CSRVDSKKLNRRVLESLVFAGALDC 893
             L A+K VG      I++A      F SL DF     +V ++ LN++ LESL+  G LD 
Sbjct: 822  GLKAVKNVGENLIEAIVQARDKLGNFTSLWDFVDKVQKVSAQVLNKKALESLIRCGTLDD 881

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            F  +R Q L   + + +  Q   +N       +F +   +      L      +   +  
Sbjct: 882  FNGNRAQYLAVYEKVMENNQKSIRNNIRGQVTLFGNLNKSED----LPNLKDFSLRDKLN 937

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE------SVATIRGNNIRLAAMVVSKQQK 1007
             E+ V+G Y SGHPLD Y+P L         E      S + I+  +IR+A ++ +K+  
Sbjct: 938  MEKEVIGIYVSGHPLDDYRPALISFSNTNTGEIFESYNSSSLIQNKDIRIAGLLKNKKTM 997

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+    + + +  +     E   FP
Sbjct: 998  ITKTNKVMAFASLEDLFGTIELIIFP 1023


>gi|254421416|ref|ZP_05035134.1| DNA polymerase III, alpha subunit subfamily, putative [Synechococcus
            sp. PCC 7335]
 gi|196188905|gb|EDX83869.1| DNA polymerase III, alpha subunit subfamily, putative [Synechococcus
            sp. PCC 7335]
          Length = 1175

 Score = 1035 bits (2676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1060 (35%), Positives = 595/1060 (56%), Gaps = 50/1060 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  ++ ++D+       AIA+TD   ++ A+E  +     GI+P
Sbjct: 2    SFVGLHIHSDYSLLDGASHIDPLVDRALELGMDAIALTDHGVMYGAIELLKVCRKKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
            IIG ++ +   D  K   + K         ++L     GY+ L++L +  +L   QGK  
Sbjct: 62   IIGNEMYVINGDITKQEKRPK------YHQLVLAKNDIGYKNLVKLTTVSHLEGVQGKGL 115

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L++   EGLI+ +    G I +A       VA +    +K L GD  Y+ 
Sbjct: 116  FSRPCINKDLLEQYH-EGLIITSACLGGEIPQAILKKRLDVARRVAQWYKDLLGDDFYLE 174

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V++A   ++ +VATN+S F+S  D EAHD L+ +    ++S+  
Sbjct: 175  IQDHGSPEDRIVNVEIVRIAQELDIKIVATNDSHFISCVDVEAHDALLCIQTGKLISEDK 234

Query: 245  RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R +   YLK+ +EM  +F D      + +A+  T E+A +      +  P +P F   
Sbjct: 235  RLRYSGTEYLKSEAEMRRLFRDHIAPEIIEDAVSRTQEVADKVEEYNILGNPQIPNFPIP 294

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E       +E+ +   A  GL  R+      +     +YR R+ +E+ ++ +M F+ YFL
Sbjct: 295  EG----HTKESYMEKVAWDGLLERMR--LSNREALTDEYRDRMAYEVAMMHQMGFATYFL 348

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A+ +NI VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 349  VVWDYIKFARDHNISVGPGRGSAAGSLVAYAMGITNIDPVHHGLLFERFLNPERKSMPDV 408

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC ++R++VI YV  KYG + VAQIITF  + +KA L+DV R L +PY++ D+L KL
Sbjct: 409  DTDFCIEKREKVIEYVTEKYGTDHVAQIITFNRMTSKAVLKDVARVLDIPYNESDKLAKL 468

Query: 479  IPNDPAHPVSLQAIADDSR----FREARLADPSV-------DRLLEISQKLEGLYRHAST 527
            IP     P  L  +  D      F+E   +   +        R ++ +  +EG  +    
Sbjct: 469  IPVSRGKPTKLNVMISDKTPDATFKEKYDSGELIPGTNVTFQRWIDTAITIEGTNKTFGM 528

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HAAG+VI + PL  +VP+ R+      +TQ+ M+ +E  GL+K DFLGL+ LT++QK++D
Sbjct: 529  HAAGVVISEHPLDTIVPLQRN-NDGSVITQYYMEDVEAIGLLKMDFLGLRNLTMIQKAVD 587

Query: 588  FLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             +  R  +++DL  +P DD +TY LL      G+FQLESSGMRQ ++ ++P  +EDI ++
Sbjct: 588  HIESRHNIEIDLDALPLDDPKTYELLAGGELAGVFQLESSGMRQIVKELKPSGLEDISSV 647

Query: 647  VSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ++LYRPGP+D   I  + +RK+G+EKI   H +++P+L+ET G+++YQEQ+M+IAQ L+G
Sbjct: 648  LALYRPGPLDAGLIPKFIDRKHGREKIDYAHKILEPILRETYGIMVYQEQIMKIAQDLAG 707

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YSL  AD+LRRAMGKK  +EM+  +E FI GA KN   +  A ++F+ +  FA+Y FNKS
Sbjct: 708  YSLGRADLLRRAMGKKKIKEMELHREEFIEGARKNEFPRKNANDLFDQMVLFAEYCFNKS 767

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+ AY  +++QTA++K +YPVE++AA +T    + +K++ +        IQ++PP +N  
Sbjct: 768  HSTAYGFVTFQTAYLKANYPVEYMAALLTAISGDQDKVQMYIASCLSMRIQVLPPDINRS 827

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
             VDF   +N+I + L+A++ VG      ++++   + PF SL D C RVD + +N+R LE
Sbjct: 828  EVDFTPLENQILFGLSAVRNVGLGAIEALIKSREEEGPFKSLADLCDRVDLRAVNKRALE 887

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG----------T 933
            +L+ +GAL+    +R QL+  L+ + ++AQ   K+R     N+F    G          T
Sbjct: 888  ALILSGALESLEPNRQQLMHDLELVIEWAQSRAKDREVGQGNLFDMLGGGTSNEPTHTTT 947

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
            F            +   R + E+ +LGFY S HPL   +   + +      E        
Sbjct: 948  FESAPKAPPIEDYDPQERLKLEKELLGFYISDHPLKNIQHSAKILAPIELSELGEKPEKV 1007

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +    M+   +   T+KG  +  V   +     EA  FP
Sbjct: 1008 TLSAIVMLSMVKPVTTKKGDSMAVVQIEDLTGHAEAVIFP 1047


>gi|189502058|ref|YP_001957775.1| hypothetical protein Aasi_0650 [Candidatus Amoebophilus asiaticus
            5a2]
 gi|189497499|gb|ACE06046.1| hypothetical protein Aasi_0650 [Candidatus Amoebophilus asiaticus
            5a2]
          Length = 1148

 Score = 1035 bits (2676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1038 (36%), Positives = 588/1038 (56%), Gaps = 37/1038 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL  H+ YSLL+G   ++ +  K       A+AITD  N+F    F  +A   GI+PI
Sbjct: 4    FTHLHCHTQYSLLDGTAKIDKLFGKAKQLGMQALAITDHGNMFGVPHFVAQAKKQGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC+  +    +            T    +LL     GY+ +++L S  +L        R
Sbjct: 64   IGCEFYLAADMHNLKEK-------TRYHQLLLAKNEVGYKNIVKLCSISFLEG-YYYKPR 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L++  +EGLI  T   +G + +A      + AEK  L++  +FG+  Y+ LQRH 
Sbjct: 116  IDKELLKKY-SEGLIATTCCLAGEVPQAIMRKGEEEAEKVFLSWLNIFGEDYYIELQRHG 174

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              ++ +    +++ A  +++ ++ATN+  ++ ++D  A D+L+ +      +  +R R  
Sbjct: 175  LKEQDKCNEVLLKWAQKYQVKVIATNDVHYVEQQDSLAQDILLCLQTGKDYNDPNRMRFD 234

Query: 250  PDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D +  K+  EM+++F D+P+A+ NT EI  + +        +LP F   +    Q   +
Sbjct: 235  GDQFFLKSPQEMLTLFHDIPQAVSNTQEIIDKINTPSLERDILLPVFQIPQGFTSQ---D 291

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR+ A+ G + R        G  + D   R+++EL VI +M F GYFLIV DFIQ AK
Sbjct: 292  SYLRHLAIEGAKKRF-------GAISADLEARINYELGVIQQMGFPGYFLIVQDFIQAAK 344

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               + VGPGRGS AGSV AY + ITDIDP+R++L FERFLNP+R+SMPD DIDF  + R 
Sbjct: 345  NLQVVVGPGRGSVAGSVVAYCIGITDIDPIRYNLFFERFLNPERVSMPDIDIDFDDEGRQ 404

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +VI YV +KYG  +VA IITFGS+ AK+A+RDV R L +P  + + + KL+P      + 
Sbjct: 405  KVIEYVVDKYGKNQVAHIITFGSMAAKSAIRDVARVLGLPLERTNYIAKLVPEKLGITLP 464

Query: 489  LQAIADDSRFREARLADPSVD-RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             ++  +     E +    +++ ++L +++ LEG  RH   HAAGI+I    L   +P+  
Sbjct: 465  -ESFEEVLELAELKKNSNTLEGKVLSLAETLEGSARHTGVHAAGIIIAPDDLLNHIPVKT 523

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
            D  SDL VTQ++   +EK G++K DFLGLKTL++++ ++  + +  G K+DL  +P DD 
Sbjct: 524  DKNSDLLVTQYDGSIVEKVGMLKMDFLGLKTLSIIKDAIALIEKLHGTKIDLEQLPLDDL 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T+ L     T+  FQ ES GMRQ L+ +QP   E++IA+ +LYRPGP+  I  +  RK+
Sbjct: 584  KTFKLYQQGDTIATFQFESEGMRQWLKKLQPTEFEELIAMNALYRPGPMQFIPNFIARKH 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+EKI   HPL+  +LK T G+++YQEQVMQ AQ+++GYSL  AD+LR+AMGKK  EEM 
Sbjct: 644  GQEKIDYPHPLLVDILKNTYGIMVYQEQVMQTAQIIAGYSLGGADLLRKAMGKKQPEEMA 703

Query: 727  KQKERFISG-ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            KQ+E F+ G   KN +  T A+ IFE++ KFA YGFN++H+AAY+VI+YQTA++K HYP 
Sbjct: 704  KQREIFVQGAQEKNNLPSTKAIEIFEVMEKFAQYGFNRAHSAAYSVIAYQTAYLKAHYPA 763

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKG 844
            E++A+ +T   +++ KI  F ++  +  IQ++ P VN   V+F V     I + L AIKG
Sbjct: 764  EYMASVLTHNQNDIGKISFFMEECIRQGIQVLGPDVNESQVNFDVTPKQGIRFGLTAIKG 823

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL 902
             G     HI+ E   +  F  +  F  RVD + +N++ LESL  +GA D F G  R Q L
Sbjct: 824  AGEGAVSHIIAEREKNGHFTDIFSFVERVDLRMVNKKTLESLAMSGAFDGFTGCHRRQYL 883

Query: 903  QSLD-------NIQKYAQWVEKNRTNKHENIFAHEKG-TFSDKITLEKFSVENSSVRFEN 954
             + D          +Y   +++ + +  +++FA +    +  K  +      +   +   
Sbjct: 884  FAADGEHNLLVKAIQYGNQIKQEKASAQQSLFAMDDNFQYIQKPPIPTCEPYDKIEKLRM 943

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+ ++GFY SGHPLD ++  L      G+ +++ T +   +RLA ++     K  ++G  
Sbjct: 944  EKELVGFYISGHPLDQFRVELANF-CDGHTQNILTFKQKEVRLAGIITECSIKYNKQGRP 1002

Query: 1015 IGWVTFSEPAKEYEANFF 1032
             G     +     +   F
Sbjct: 1003 FGLFILEDYHGTLDLALF 1020


>gi|188996572|ref|YP_001930823.1| DNA polymerase III, alpha subunit [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931639|gb|ACD66269.1| DNA polymerase III, alpha subunit [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 1165

 Score = 1034 bits (2675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1050 (36%), Positives = 581/1050 (55%), Gaps = 34/1050 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  FVHL +HS YSLL+G +    +  K       A+ +TD  N+F A+EF ++    G+
Sbjct: 2    AQDFVHLHLHSHYSLLDGMIKPKELAKKAVEYGYKAVGLTDHGNIFGAVEFYEEMRKVGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPF--PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            +P+IG +      +  +   +G           ++L      G++ L++L S  Y     
Sbjct: 62   KPLIGMESYFTN-NRFEKKGEGSDDILTDKNYHLILFAKDKTGFKNLMKLSSIAYTEG-F 119

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                RI    L++   EGLI  T    G +         + A+K     K +FG+ LY  
Sbjct: 120  YYKPRIDWELLEKYH-EGLICQTACLKGFVPNLLAQGKYEEAKKYAKRLKDIFGEDLYFE 178

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-- 242
            +Q +   ++      +++LA    + +V TN+S +L+ ED+ AHDV+ A+     + +  
Sbjct: 179  IQVNGLEEQNIANEGIIRLAKELGVKVVGTNDSHYLNPEDHTAHDVVKALQMKKTLKELY 238

Query: 243  -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEK 298
             + +       +     EM   F    E L+NT+EIA +C+  +   +    + P+F   
Sbjct: 239  SEGKAFRVKGLHFTRPEEMYEKFKGYEEYLKNTMEIAEKCNLEIDTAETRGYLFPKFETP 298

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E               A  GLE RL           ++YR+RLD+E+NVI +M F+ YFL
Sbjct: 299  EGM----TPAQYFEKLAREGLEKRLESIKDLTPEKLKEYRERLDYEINVINQMGFAEYFL 354

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI +AKKN IPVGPGRGS  GS+ AY L IT++DPL+  LLFERFLNPDR+SMPD 
Sbjct: 355  IVQDFINYAKKNGIPVGPGRGSAGGSLVAYCLRITEVDPLKHGLLFERFLNPDRISMPDI 414

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC +RR++VI YV+ KYG + VAQIITF  +++K  +RDV R L  PY + D++ K+
Sbjct: 415  DVDFCMERREKVIDYVKQKYGEDSVAQIITFNFMKSKMVIRDVARTLGFPYQEADKIAKM 474

Query: 479  IPNDPAHPVSL---QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            I   P    +L   + +     F++    D  V  LL++++KLEG  RH   HAAGIVI 
Sbjct: 475  ILPGPIQGSTLTIDENLEAHPDFKKLYETDEKVRELLDLARKLEGSARHTGIHAAGIVIA 534

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
               L + VP+YRD   +   TQF MK +E+ GL+K DFLGLKTLT L      + +R  +
Sbjct: 535  PGTLDEYVPVYRDKDGNR-ATQFEMKTLEQLGLVKMDFLGLKTLTELDYMKKLIKERHGI 593

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VD + +PFDD   + LL +  T G+FQLES GM+  L  ++P  +++IIA+++L+RPGP
Sbjct: 594  DVDYNSLPFDDENVFKLLQSGRTTGVFQLESKGMQDLLVRLKPSNLDEIIAILALFRPGP 653

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            + + +V  Y  RK+G++ I      +  +LKET G+I+YQEQ+M ++ +LSG++++EAD 
Sbjct: 654  LMSGMVDEYIERKHGRKPIEYPFEEVKDILKETYGLIVYQEQIMFMSNILSGFTMAEADT 713

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LR+A+GKK  E M K K+RFI GA + G SK     +++ + KFA Y FNKSH+ AYA +
Sbjct: 714  LRKAIGKKNPEVMAKMKDRFIGGAVERGFSKEKVEKLWDDIEKFASYSFNKSHSTAYAYL 773

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +Y TAW+KT+YP EF A  ++ E ++  K      D   FNI+++PP VN    +F + +
Sbjct: 774  TYWTAWVKTYYPEEFFAVKLSTENNDS-KFLNLLLDMENFNIKLLPPDVNKSMPEFAIEE 832

Query: 833  N-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              +I + L+ IKG+G   A+ I+E   + PF  + DFC R D+K  N++VLESL+ AGA 
Sbjct: 833  KSKIRFGLSRIKGIGEEVAKSIVEERKNGPFVDIFDFCERFDTKVANKKVLESLIKAGAF 892

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSV 950
            D  G  R  LL++++      Q    +++    ++FA       + K   E  +      
Sbjct: 893  DFEGIDRGILLENVEKAITTGQKARDSKSAGQNSLFALTTTPVVNVKHIYEDGTKLTEKE 952

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-------RGNNIRLAAMVVS 1003
            +   E+ VLGFY SGHPL+ YK  L+   +    E + +         G+ +++A ++  
Sbjct: 953  KLRLEKEVLGFYLSGHPLNAYKNELKNK-VLKISEIMESAFGDKTFQSGSKVKIAGVIDE 1011

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + KKT+ G+ +     S+   + +   FP
Sbjct: 1012 IKYKKTKSGATMIVFQISDETGQMDVRAFP 1041


>gi|91202895|emb|CAJ72534.1| similar to DNA polymerase III, alpha subunit [Candidatus Kuenenia
            stuttgartiensis]
          Length = 1155

 Score = 1034 bits (2674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1037 (38%), Positives = 606/1037 (58%), Gaps = 33/1037 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL VHS YSLL+GA  + +++ K    + PA+A+TD  N++ A+EF + A +AGI+P
Sbjct: 5    NFVHLHVHSEYSLLDGACKIKDLVSKALHFKMPALALTDHGNMYGAIEFYEAAQSAGIKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +     L    + K    T+  I LL    EGY+ L++L +  YL        
Sbjct: 65   IIGYEAYVAQGGRLD--KESKNGKETLSHITLLAENYEGYRNLLKLSTSAYLEG-FYYKP 121

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
            RI    L+   + G+I L+G  +  I+R   F+    A    + + +LFG+   Y+ +Q 
Sbjct: 122  RIDKELLKS-HSAGIICLSGCMASEINRHLSFDRHDDAMNLAIEYLELFGENHFYLEIQN 180

Query: 189  HRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            ++   + +  S   ++  T  +PLVATN+  +++ +D  AHD L+ +     VS + R R
Sbjct: 181  NKIPLQEKLVSAAFKIGKTLNIPLVATNDVHYMNIDDAVAHDALLCINTGKRVSDRQRLR 240

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + Y KN  EM ++F ++P ALENT+ IA RC   +      LP+F   E       
Sbjct: 241  FDTNEFYFKNYQEMHALFKEIPHALENTLHIAERCDVKMDFGKLHLPKFTPPEGI----S 296

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  LR     G+  +        G       +RLD EL VI +  F  YFLIV DFI +
Sbjct: 297  NKAYLRKLCEEGVIRKY-------GAILPHISERLDHELKVIEKTGFVEYFLIVWDFIHY 349

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A   NIP   GRGSGAGS+ AY L IT+IDP+   LLFERFLN +R+SMPD DIDFC + 
Sbjct: 350  ANTLNIP-ATGRGSGAGSIVAYVLNITNIDPIENDLLFERFLNAERISMPDLDIDFCAEG 408

Query: 427  RDEVIRYVQNKYGHE-RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            R+E+IRYV+ KYG +  VAQIITFG+++AKA +RDVGR L +P S+VD++ KLIPN    
Sbjct: 409  REEIIRYVREKYGGDSNVAQIITFGTMKAKAVIRDVGRVLDIPLSEVDKIAKLIPNTLNI 468

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+  +   +    A+     L +IS+KLEGL RHAS HAAGIVI D PL++ VP+
Sbjct: 469  TLE-EALEQEPALKAICQAEKQFKELFDISKKLEGLCRHASVHAAGIVISDEPLTEYVPL 527

Query: 546  YRDVRSDLPVTQF-NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603
             +  + D   TQ+ +   ++K GL+K DFLG++ LT+++++L  + +     +DL+ IP 
Sbjct: 528  AK--KGDAVTTQYYDEILVDKIGLLKADFLGVRKLTVIKRALQLIHETTREIIDLAKIPV 585

Query: 604  DDHETYHLLTTKGTLGIFQLESS-GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
            DD  TY +L++    G+FQ+E+S G ++ L+ ++PD   DI+ LV+LYRPGP+ + +V  
Sbjct: 586  DDKATYQMLSSGNVKGVFQVETSKGFKELLKKLKPDTFADILPLVALYRPGPLQSGMVDS 645

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + NRK+GKE +  IHP ++ +LKET GVI+YQEQVM+IA  L+G++L+EAD LR+AMGKK
Sbjct: 646  FINRKHGKEAVEYIHPTLELILKETYGVILYQEQVMRIANRLAGFTLNEADNLRKAMGKK 705

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              E M K K++F++GA  N I K  A+ IFEL+  FA YGFNKSH+AAYAVI+YQTA++K
Sbjct: 706  KPEIMAKFKDQFVNGAISNDIPKKTAIKIFELMEFFAGYGFNKSHSAAYAVITYQTAYLK 765

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSL 839
            T+YP++++ A ++ E  N EKI  + +D R+ NI+I+ P VN    DF +   N+I + L
Sbjct: 766  TNYPLQYMTAQLSCEKQNTEKIIDYIEDCRRMNIEILKPDVNESLSDFIISEGNKIRFGL 825

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             ++K  G      I+ A      F S+ DFC RVD + +N++V+ESLV +G+ D     R
Sbjct: 826  GSVKNAGDKAIESIVSAREKGGKFSSILDFCKRVDLRTVNKQVIESLVKSGSFDSLSDDR 885

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT---FSDKITLEKFSVENSSVRFENE 955
             +LL SLD+  +    V K +      +F          +    +   +  N +   + E
Sbjct: 886  ARLLASLDSAMELGSAVNKGKRKGQRALFDIGSAMDVIETGNTAISNTTPWNENEIRQAE 945

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LGFYFS  PL  Y+  ++ +      E      G ++ +  ++   ++  T+KG  +
Sbjct: 946  KESLGFYFSSSPLSEYEEKIKLLATNSSSEISELPEGTDVIIGGIITDIKKSTTKKGDPM 1005

Query: 1016 GWVTFSEPAKEYEANFF 1032
             ++T  +     +   F
Sbjct: 1006 MYITLDDMEGAIKCIAF 1022


>gi|119505681|ref|ZP_01627751.1| DNA polymerase III subunit alpha [marine gamma proteobacterium
            HTCC2080]
 gi|119458493|gb|EAW39598.1| DNA polymerase III subunit alpha [marine gamma proteobacterium
            HTCC2080]
          Length = 1153

 Score = 1034 bits (2674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1040 (39%), Positives = 593/1040 (57%), Gaps = 38/1040 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +SL++G + +  ++ ++AA   PA+A+TD  N +  ++  + A  AG++ I
Sbjct: 4    FVHLRLHTEFSLVDGLVRIPKLMGEVAAQGMPAVAVTDATNFYGLIKAYKAAQRAGLKLI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  L ++  D+                I LL    +GYQ L  L+S+ +   Q   S R
Sbjct: 64   VGVDLWVEDADDRDRPKP----------ISLLAMNEQGYQNLTLLISKAWREGQYHGSPR 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL +   EG++ L+ G  G   +       + A   L  +   F +R Y+ + R  
Sbjct: 114  IERDWL-DAHAEGVLALSAGCQGEFGQLLNNGHVEEARASLKRWMATFPERFYIEVHRTG 172

Query: 191  GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
               +       V+LA   E P+VATN+  FL+  ++EAH+  + + +   +    RPR  
Sbjct: 173  RIGEEDFLHAAVELAAEMECPIVATNDVRFLNTSEFEAHEARVCIGYGRTLDDPRRPREY 232

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   YL+   EM  +FSDLPE+L NTVEIARRCS  + +  P LP F   +   I    E
Sbjct: 233  SEQQYLRTPEEMAELFSDLPESLANTVEIARRCSVTIPLGEPSLPDFPVPDGTTI----E 288

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L   +  GL  RL Q  +       +Y+QRLDFEL VI  M F GYFL+V DFI+W K
Sbjct: 289  DFLSQLSHDGLSRRLEQLQLTDPDTLSEYKQRLDFELGVINEMGFPGYFLVVMDFIRWGK 348

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  IPVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP R+SMPDFD+DFC DRRD
Sbjct: 349  QQGIPVGPGRGSGAGSLVAYVLEITDLDPLAYDLLFERFLNPQRVSMPDFDVDFCMDRRD 408

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV + YG E V+QIITFG++ AKA +RDV R    PY   D++ KLIP +    + 
Sbjct: 409  EVIEYVADTYGREAVSQIITFGTMAAKAVVRDVARVQDKPYGLADKMSKLIPFEVGITLE 468

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+  +    +    D S   + +++ +LEG+ R+   HA G+VI    L+   P+Y D
Sbjct: 469  -KAVEQEEALAQLLKEDGSAQEIWDMAIQLEGVTRNVGKHAGGVVIAPSRLTDFSPLYCD 527

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----RGVKVDLSLIPF 603
                  VTQ++   +E+AGL+KFDFLGL+TLT++  ++  + +     +  K+D+S IP 
Sbjct: 528  EAGGGLVTQYDKNDVEEAGLVKFDFLGLRTLTIIDWAVAMINKARGHEQPEKLDISEIPL 587

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661
            DD   + LL +  T  +FQLES GM+  ++ +QPD  EDIIALV+L+RPGP+ + +   +
Sbjct: 588  DDSRVFTLLKSAETTAVFQLESRGMKDLIKRLQPDSFEDIIALVALFRPGPLQSGMVDNF 647

Query: 662  NNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             NRK+G+E +        H  + P+L+ T G+I+YQEQVMQIAQ L+GY+L  AD+LRRA
Sbjct: 648  INRKHGREALAYPDASYQHSSLQPILEPTYGIILYQEQVMQIAQELAGYTLGGADLLRRA 707

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  EEM KQ+  F  GASK GI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT
Sbjct: 708  MGKKKPEEMAKQRSVFEEGASKKGIDPNLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 767

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRI 835
            AW+KTH+P EF+AA M+ E+DN +K+     + +   + +  P VN     F V   N I
Sbjct: 768  AWLKTHFPAEFMAAVMSSELDNTDKLLTLRDECKSMGVPLRLPGVNEGAYLFTVNAANEI 827

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y L AIKG+G     +++ A  AD  F  L D CSR D +K+NRR LE+L+ +GALD F
Sbjct: 828  VYGLGAIKGLGEGPVENLLAARVADGAFKDLFDLCSRTDPRKVNRRALEALIKSGALDGF 887

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK--FSVENSSVRF 952
            G  R   L +LD+  + A+    N      ++F     T       E             
Sbjct: 888  GVERWIQLAALDDALRAAEQTVANDEAGMTDLFGDVAPTADGDPYAEHRGVRPWTLKEIL 947

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              E+  +G + SGHP+  Y+  +RK   +   +       +N  +A ++V  +  KT++G
Sbjct: 948  NGEKESVGSFLSGHPIQEYEAEVRKFAPRRLRDLQP---DSNTTVAGLIVDIRTIKTQRG 1004

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
              +  +   +   + E+  +
Sbjct: 1005 -VMAVLKLDDNTGQIESTVY 1023


>gi|167618438|ref|ZP_02387069.1| DNA polymerase III subunit alpha [Burkholderia thailandensis Bt4]
          Length = 1113

 Score = 1034 bits (2673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1042 (39%), Positives = 608/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AG
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I  +D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNRDD----------RDKPSRLLLLVKNKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    +GL+ L+G   G I  A    +   A +    + ++F    Y+ L
Sbjct: 112  GRAELDASWLEGELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 232  QKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RLAQ       +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSQEGLEKRLAQLYPDGAEREAQRDKYNQRLDFECGTIKKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLPPDINQSHYRFEPVAQADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 828  PSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            LD    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 888  LDSLHANRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MVIALLDDGTGQCEVTVF 1022


>gi|206582064|pdb|3E0D|A Chain A, Insights Into The Replisome From The Crystral Structure Of
            The Ternary Complex Of The Eubacterial Dna Polymerase Iii
            Alpha-Subunit
 gi|206582065|pdb|3E0D|B Chain B, Insights Into The Replisome From The Crystral Structure Of
            The Ternary Complex Of The Eubacterial Dna Polymerase Iii
            Alpha-Subunit
          Length = 1220

 Score = 1034 bits (2673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 434/1100 (39%), Positives = 615/1100 (55%), Gaps = 90/1100 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAAD--QQPAIAITDTNNLFSALEFSQKA 62
            +     F HL  H+ +SLL GA  L ++L  +     + PA+A+TD  NLF A+EF +KA
Sbjct: 1    MGSKLKFAHLHQHTQFSLLNGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKA 60

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
             A G++PIIG +  +  +       +GK        + LL     GYQ L+ L SR YL 
Sbjct: 61   TAMGVKPIIGYEAYVAAESRFDR-KRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYLE 119

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                +  RI    L+E   +GLI L+G     I +    +   +AE RL     +FGDR 
Sbjct: 120  G-FYEKPRIDREILRE-HAQGLIALSGCLGAEIPQFILQDRLDLAEARLNEDLSIFGDRF 177

Query: 183  YVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ +Q H   ++ + +QV+ + A  + L +VATNN  ++ +ED  AH+VL+A+   T + 
Sbjct: 178  FIEIQNHGLPEQKKVNQVLKEFARKYGLGMVATNNGHYVRKEDARAHEVLLAIQSKTTLD 237

Query: 242  QKDRPRVTPDHYL-KNRSEMVSIFSDLPEA------LENTVEIARRCSFILQVHA---PI 291
              +R R   D +  K   EM ++   LPEA       +NTVEIAR C   L +       
Sbjct: 238  DPERWRFPCDEFYVKTPEEMRAM---LPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYR 294

Query: 292  LPRFIEKECDDIQKEEENELRN-------------------------------------- 313
            +PRF   E     + E   LR                                       
Sbjct: 295  IPRFPLPEG----RTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERAL 350

Query: 314  ---------KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                     KA   L  RL      + + A+    R  +EL+VI RM F GYFLIV D+I
Sbjct: 351  AEALARVEEKAWEELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYI 410

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WA+ + + VGPGRGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF  
Sbjct: 411  NWARGHGVSVGPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSD 470

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
              RD VI+YV+ +YG ++VAQI TFGSL +KAAL+DV R   +P+ + + L KLIP    
Sbjct: 471  RERDRVIQYVRERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFG 530

Query: 485  HPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             P  LQ A   +   R     D  + +++E++ +LEGL RHAS HAAG+VI   PL+ LV
Sbjct: 531  KPKPLQEAFEAEPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLV 590

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+ RD +   PVTQ++M  +E  GL+K DFLGL+TLT L ++   + + +GV++D   +P
Sbjct: 591  PLMRD-QEGRPVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVELDYDRLP 649

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +T+ LL+   T G+FQLES GM   + G++P  +EDIIALVSLYRPGP+++I  Y 
Sbjct: 650  LDDPKTFELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYI 709

Query: 663  NRKNGKEKIVS---IHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
             R +G+E +      H    + P+L ET G+ +YQEQ+MQIA  ++GYSL EAD+LRRAM
Sbjct: 710  RRHHGQEPVSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAM 769

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +ERF+ GA + G+ +  A  +F++L  FA+YGFNKSHAAAY+++SYQTA
Sbjct: 770  GKKRVEEMQKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTA 829

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYPVEF+AA +++E  + +K+ ++ +DAR   I ++PP VN    DFKV    I +
Sbjct: 830  YVKAHYPVEFMAALLSVERHDSDKVAEYIRDARALGIPVLPPDVNRSGFDFKVVGEEILF 889

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+A+K VG   AR I+E      PF SL DF  R+  + +N+R LESLV AGALD FG 
Sbjct: 890  GLSAVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDAFG- 948

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R +LL SL+ + ++A    +   +    +FA       ++  L + S  +       E+
Sbjct: 949  DRARLLASLEPLLRWAAETRERGRSGLVGLFAEV-----EEPPLVEASPLDEITMLRYEK 1003

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR---GN-NIRLAAMVVSKQQKKTRKG 1012
              LG Y SGHP+  Y P LR++     EE    +R   G   + L+ MV    +K TR G
Sbjct: 1004 EALGIYVSGHPVLRY-PGLREVASCTIEELSEFVRELPGKPKVLLSGMVEEVVRKPTRSG 1062

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
              +   T S+     E   F
Sbjct: 1063 GMMARFTLSDETGALEVVVF 1082


>gi|83720422|ref|YP_441538.1| DNA polymerase III subunit alpha [Burkholderia thailandensis E264]
 gi|83654247|gb|ABC38310.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia thailandensis
            E264]
          Length = 1278

 Score = 1034 bits (2673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1042 (39%), Positives = 608/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AG
Sbjct: 106  SDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAG 165

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I  +D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 166  IKPIAGCDVWITNRDD----------RDKPSRLLLLVKNKRGYLNLCELLSKAWLTNQYR 215

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    +GL+ L+G   G I  A    +   A +    + ++F    Y+ L
Sbjct: 216  GRAELDASWLEGELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGFYLEL 275

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R
Sbjct: 276  QRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRR 335

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 336  QKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL- 394

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RLAQ       +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 395  ---DDYLVQLSQEGLEKRLAQLYPDEAEREAQRDKYNQRLDFECGTIKKMGFPGYFLIVA 451

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 452  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 511

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 512  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 571

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 572  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 631

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 632  DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 691

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 692  LAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 751

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 752  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 811

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 812  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 871

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+        
Sbjct: 872  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLPPDINQSHYRFEPVAQADGK 931

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 932  PSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGA 991

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            LD    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 992  LDSLHANRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKR 1048

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 1049 RLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1105

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1106 RGK-MVIALLDDGTGQCEVTVF 1126


>gi|328950095|ref|YP_004367430.1| DNA polymerase III, alpha subunit [Marinithermus hydrothermalis DSM
            14884]
 gi|328450419|gb|AEB11320.1| DNA polymerase III, alpha subunit [Marinithermus hydrothermalis DSM
            14884]
          Length = 1224

 Score = 1034 bits (2673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1092 (38%), Positives = 608/1092 (55%), Gaps = 83/1092 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAAD--QQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            F HL  H+ YSLL+GA  L ++++ +      +PA+A+TD  NL  A++F +KA AAG++
Sbjct: 3    FAHLHQHTQYSLLDGAAKLQDLIEWVKQVTPDEPALAMTDHGNLHGAVDFYKKATAAGVK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG +  +  +        GK        + +L     GYQ L  L SR YL       
Sbjct: 63   PIIGYEAYVAAESRFDR-KMGKGLDGGYFHLTILAENFTGYQNLCRLASRAYLEG-FYMK 120

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L+E   EGLI+L+G     I +    +   +AE RL  + ++FGDR ++ +Q 
Sbjct: 121  PRIDRELLRE-HNEGLIVLSGCLGAEIPQFILQDRLDLAEDRLKEYLEIFGDRYFIEIQD 179

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D+   + + + A  + + +VATN+  ++ +ED EAH VL+A+   +     +R R
Sbjct: 180  HGLPEDKKVNAVLKEFARKYGIGMVATNDGHYVKKEDAEAHAVLLAIQSKSTWDDPNRWR 239

Query: 248  VTPDHYL-KNRSEMVSIFSDLP---EALENTVEIARRCSFILQVHA---PILPRFIEKEC 300
               D +  K+   M +         E  +NT+EIARRC+  L V       +PR+   E 
Sbjct: 240  FPCDEFYVKSPEAMRAALPAEEWGDEIFDNTMEIARRCNVELPVGDKMVYRIPRYPLPEG 299

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------------------------AQD 336
             D    E   LR     GL  R         Y                          ++
Sbjct: 300  RD----ENQYLRELTFRGLLERYPDRVTEALYREFLKKLGRTPHGDAQALAAEIALLPKE 355

Query: 337  YRQ----------------------RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
             R+                      R ++EL+VI +M F GYFLIV D+I WAK   I V
Sbjct: 356  LREKAQAFLPKLEEGLEWDGWAILARAEYELSVIEQMGFPGYFLIVQDYINWAKNQGISV 415

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
            GPGRGS AGS+ AYA+ IT+IDPL F+LLFERFLNP R++MPD D DF   RRDEVI+YV
Sbjct: 416  GPGRGSAAGSLVAYAIRITNIDPLEFNLLFERFLNPARVTMPDIDTDFSDVRRDEVIQYV 475

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIA 493
            + +YG ++VAQI TFG++ +KAAL+DV R   MP+ + + L KLIP     P+ L +A  
Sbjct: 476  RERYGEDKVAQIATFGTMASKAALKDVARVFGMPHKRAEELAKLIPVQFGKPMPLAKAAE 535

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                 R+A   D  V R+ E++++LEGL RHAS HAAG+VI   PL+ LVP+ RD     
Sbjct: 536  TIPEIRQAMEQDEQVRRVFEVARRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRDTSGTG 595

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLL 612
             VTQ++M  +E  GL+K DFLGL+TL+ L+++   + + +GV++D   IP DD +T+ LL
Sbjct: 596  VVTQYDMGSVEALGLLKMDFLGLRTLSFLEEAKRIIRESKGVELDYDRIPLDDAKTFELL 655

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
                T GIFQLESSGM   + G++P  I+DIIALVSLYRPGP+++I  Y  R +G+E + 
Sbjct: 656  GRGETKGIFQLESSGMSSTVRGLKPRRIQDIIALVSLYRPGPMEHIPTYIRRHHGREPVT 715

Query: 673  S---IH--PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
                 H    ++P+L+ET G+ +YQEQ+MQIA  ++GYSL EAD+LRRAMGKK  EEM K
Sbjct: 716  YAEFPHAAKYLEPILRETYGIPVYQEQIMQIASAVAGYSLGEADLLRRAMGKKKVEEMQK 775

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             + RF+ GA++ GI +  A  +F++L  FA+YGFNKSHAAAY+++SYQTA++K +YPVEF
Sbjct: 776  HRVRFVKGAAERGIPEDEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKANYPVEF 835

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +AA +T+E  N +K+ ++ +DAR   I ++PP +N    DF+V    I + L+A+K VG 
Sbjct: 836  MAALLTVERRNSDKVAEYIRDARAMGIAVLPPDINRSGFDFRVVGQEILFGLSAVKNVGE 895

Query: 848  TTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               RHI+E      PF SL DF  RVD  ++NRR  ESL+ AGA D FG  R ++L +L+
Sbjct: 896  GAVRHILEERDRGGPFKSLADFLKRVDLHQVNRRAAESLIKAGAFDAFGE-RGRMLAALE 954

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
            ++ K+AQ  ++++      +FA                  +   +   E+  L  Y +GH
Sbjct: 955  SLMKWAQAEKESQAAGMMGLFAGASTEPPLPEVP----PLDEVTKLRYEKEALSIYVTGH 1010

Query: 967  PLDVYKPILRKMGIKGYEES----VATIRGNNIR--LAAMVVSKQQKKTRKGSRIGWVTF 1020
            PL  Y+  LR+      EE          G   R  LA MV S  +K T+ G  +     
Sbjct: 1011 PLLNYEG-LREAATCTIEELPRWYAEQGNGRRARALLAGMVESVVRKPTKSGGMMARFNL 1069

Query: 1021 SEPAKEYEANFF 1032
            ++     E   F
Sbjct: 1070 ADETGAVEVVVF 1081


>gi|167580315|ref|ZP_02373189.1| DNA polymerase III subunit alpha [Burkholderia thailandensis TXDOH]
          Length = 1094

 Score = 1034 bits (2673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1042 (39%), Positives = 608/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AG
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I  +D+                ++LLV    GY  L +L+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNRDD----------RDKPSRLLLLVKNKRGYLNLCKLLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    +GL+ L+G   G I  A    +   A +    + ++F    Y+ L
Sbjct: 112  GRAELDASWLEGELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 232  QKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RLAQ       +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSQEGLEKRLAQLYPDEAEREAQRDKYNQRLDFECGTIKKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLPPDINQSHYRFEPVAQADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 828  PSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            LD    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 888  LDSLHANRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MVIALLDDGTGQCEVTVF 1022


>gi|302672122|ref|YP_003832082.1| DNA polymerase III E DnaE1 [Butyrivibrio proteoclasticus B316]
 gi|302396595|gb|ADL35500.1| DNA polymerase III E DnaE1 [Butyrivibrio proteoclasticus B316]
          Length = 1179

 Score = 1033 bits (2672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1077 (34%), Positives = 555/1077 (51%), Gaps = 70/1077 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +   + ++      A AITD   ++  ++F +    AGI P
Sbjct: 2    AFTHLHVHTEYSLLDGSNKIKEYVKRLGELGMTAGAITDHGVMYGVIDFYKACRDAGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ +      +   +          +VLL     GY  L  +VSR +         
Sbjct: 62   VIGCEVYVAPGSRFE--KETAVSDDRYYHLVLLAENNVGYANLSHIVSRGFTEG-YYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+ +  L++   EG+I L+   +G I R     +   A++  +    +F     ++ LQ 
Sbjct: 119  RVDMELLEQYH-EGIIALSACLAGEIPRNIVKGTPDKAKEAAIRLDNIFGHGNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++    + ++ L+   ++PLVATN+  +   +D EAHD+L+ +     VS +DR R
Sbjct: 178  HGIPEQRMVNASLMALSQELDIPLVATNDCHYTYADDAEAHDLLLCIQTGKXVSDEDRMR 237

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y  K+  EM S+F    EAL+NT +IA RC   ++     LP F   E  D    
Sbjct: 238  YEGGQYYVKSEEEMRSLFPYAQEALDNTQKIADRCHVEIEFGVTKLPHFEVPEGYD---- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L    + GL  R               + +LD+EL VI RM +  YFLIV D+I +
Sbjct: 294  SWTYLNKLCLDGLHERYPDDDGT-------LKDKLDYELGVIKRMGYVDYFLIVWDYINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             ++N I VGPGRGS AGS+ +Y + IT+IDP+++ LLFERFLNP+R+SMPD D+DF  +R
Sbjct: 347  CRENGIAVGPGRGSAAGSIVSYCMHITNIDPIKYDLLFERFLNPERVSMPDIDVDFEYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R +VI YV  KYG ++V QIITFG+L AK  +RDV R + +PYS  D + K+IP +    
Sbjct: 407  RQDVIDYVTEKYGADKVVQIITFGTLAAKGVIRDVARVMDLPYSFGDTISKMIPTELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   R    +D +V +L+++ +KLEGL RH S HAAG+VI   P   LVP+ 
Sbjct: 467  LD-KALEMNPELRSQYESDETVHKLIDMCKKLEGLPRHTSIHAAGVVICSAPAEDLVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-------RGVKVDLS 599
            R    ++  TQF M  IE+ GL+K DFLGL+TLT+++ + +F  +           +++ 
Sbjct: 526  RSAEGNV-TTQFTMTTIEELGLLKMDFLGLRTLTVIKDATNFANRSLGAKPGDANYINID 584

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I ++D      + +    G+FQLES GM+  ++ ++P  +EDIIA +SLYRPGP+D I 
Sbjct: 585  EIDYNDPAVLASIGSGRCDGVFQLESGGMQSFMKELRPQSLEDIIAGISLYRPGPMDFIP 644

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y   KN    I    P ++P+LK T G I+YQEQVMQI Q L GY+L  AD++RRAM K
Sbjct: 645  KYIAGKNDAGAITYQTPELEPILKPTYGCIVYQEQVMQIVQQLGGYTLGRADLVRRAMSK 704

Query: 720  KIKEEMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            K +  M+ ++  F++G  +         GIS  I   I++ +  FA Y FNKSHAA YAV
Sbjct: 705  KKQHVMEVERANFVNGNPEENVPGCASKGISPEIGNAIYDSMMDFAKYAFNKSHAACYAV 764

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++ QTAW+K +YPVEF+AA MT  +DN  K+  +    R  NI ++PP +N     F V 
Sbjct: 765  VALQTAWLKYYYPVEFMAALMTSVIDNPGKVSGYIMSCRNMNIALLPPDINEGFDGFSVT 824

Query: 832  ----------------------DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDF 868
                                     I Y+L AIKGVG      I++       F +L DF
Sbjct: 825  EIDAGDNDKPIPGAVVTTAPGRKKAIRYALTAIKGVGRPVIASIVQERQLHGKFKNLNDF 884

Query: 869  CSRVDSKKL--NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
             SR+  +    N+R +E+ + AGA +CF  +R Q +    +I        +N       +
Sbjct: 885  LSRMQGRANDVNKRAVENFIKAGAFECFEGTRKQHMTVYAHIMDQLHNSNRNSMAGQMTL 944

Query: 927  --FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
              FA E+     +I L         +  E E+ VLG Y SGHPL+ Y  I +K       
Sbjct: 945  FDFAGEEEKKMYEIPLPDVGEFPRELLLEFEKEVLGIYVSGHPLEEYIGIWKKKITNTTT 1004

Query: 985  ES--------VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +                 + +  ++  K+ K T+    + ++T  +     E   FP
Sbjct: 1005 DFYLDDETGVPVVRDNATVTIGGIISDKKVKYTKTDQIMAFLTVEDLVGSIEVIVFP 1061


>gi|257139773|ref|ZP_05588035.1| DNA polymerase III subunit alpha [Burkholderia thailandensis E264]
          Length = 1174

 Score = 1033 bits (2672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1042 (39%), Positives = 608/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AG
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I  +D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNRDD----------RDKPSRLLLLVKNKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    +GL+ L+G   G I  A    +   A +    + ++F    Y+ L
Sbjct: 112  GRAELDASWLEGELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGFYLEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 232  QKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RLAQ       +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSQEGLEKRLAQLYPDEAEREAQRDKYNQRLDFECGTIKKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLPPDINQSHYRFEPVAQADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 828  PSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            LD    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 888  LDSLHANRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MVIALLDDGTGQCEVTVF 1022


>gi|237756627|ref|ZP_04585141.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium yellowstonense
            SS-5]
 gi|237691212|gb|EEP60306.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium yellowstonense
            SS-5]
          Length = 1166

 Score = 1033 bits (2672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1049 (36%), Positives = 583/1049 (55%), Gaps = 35/1049 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +HS YSLL+G +    +  K A     A+ +TD  N+F A+EF ++    G++P
Sbjct: 4    DFVHLHLHSHYSLLDGMIKPKELAKKAAEYGYKAVGLTDHGNIFGAVEFYEEMRKVGVKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF--PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +IG +      +  +   +G           ++L      G++ L++L S  Y       
Sbjct: 64   LIGMESYFTN-NRFEKKGEGSDDILTDKNYHLILFAKDKTGFKNLMKLSSIAYTEG-FYY 121

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              RI    L++   EGLI  T    G +         + A+K     K +FGD LY  +Q
Sbjct: 122  KPRIDWELLEKYH-EGLICQTACLKGFVPNLLAQGKYEEAKKYGKRLKDIFGDDLYFEIQ 180

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ---K 243
             +   ++      +++LA    + +V TN+S +L+ ED+ AHDV+ A+     + +   +
Sbjct: 181  INGLEEQNIANEGIIRLAKELGVKVVGTNDSHYLNPEDHTAHDVVKALQMKKTLKELYSE 240

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKEC 300
             +       +     EM   F    E L+NT+EIA +C+  +   +    + P+F   E 
Sbjct: 241  GKAFRVKGLHFTRPEEMYEKFKGYEEYLKNTMEIAEKCNLEIDTAETRGYLFPKFETPEG 300

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                          A  GLE RL           ++YR+RLD+E+NVI +M F+ YFLIV
Sbjct: 301  M----TPAQYFEKLAREGLEKRLESIKDLTPEKLKEYRERLDYEINVINQMGFAEYFLIV 356

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI +AKKN IPVGPGRGS  GS+ AY L IT++DPLR  LLFERFLNPDR+SMPD D+
Sbjct: 357  QDFINYAKKNGIPVGPGRGSAGGSLVAYCLRITEVDPLRHGLLFERFLNPDRISMPDIDV 416

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC +RR++VI YV+ KYG + VAQIITF  +++K  +RDV R L  PY + DR+ K+I 
Sbjct: 417  DFCMERREKVIDYVKQKYGEDSVAQIITFNFMKSKMVIRDVARTLGFPYQEADRIAKMIL 476

Query: 481  NDPAHPVSL---QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
              P    +L   + +     F++    D ++  LL++++KLEG  RH   HAAGIVI   
Sbjct: 477  PGPTQGSTLTIDENLEAHPDFKKLYETDENIRELLDLARKLEGSARHTGIHAAGIVIAPG 536

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKV 596
            PL + VP+YRD   +   TQF MK +E+ GL+K DFLGLKTLT L      + +R  V V
Sbjct: 537  PLDEYVPVYRDKDGNR-ATQFEMKTLEQLGLVKMDFLGLKTLTELDYMKKLIKERHGVDV 595

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D + +PFDD   + LL +  T G+FQLES GM+  L  ++P  +++IIA+++L+RPGP+ 
Sbjct: 596  DYNSLPFDDQNVFKLLQSGRTTGVFQLESKGMQDLLVRLKPSNLDEIIAILALFRPGPLM 655

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +V  Y  RK+G++ I      +  +LKET G+I+YQEQ+M ++ +LSG++++EAD LR
Sbjct: 656  SGMVDEYIERKHGRKPIEYPFEEVKDILKETYGLIVYQEQIMFMSNILSGFTMAEADTLR 715

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +A+GKK  E M K K+RFI GA + G SK     +++ + KFA Y FNKSH+ AYA ++Y
Sbjct: 716  KAIGKKNPEVMAKMKDRFIGGAVERGFSKEKVEKLWDDIEKFASYSFNKSHSTAYAYLTY 775

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN- 833
             TAW+KT+YP EF A  ++ E ++  K      D   FNI+++PP VN    +F + +  
Sbjct: 776  WTAWVKTYYPEEFFAVKLSTENNDS-KFLNLLLDMENFNIKLLPPDVNKSMPEFAIEEKS 834

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +I + L+ IKG+G   A+ I+E    + PF  + DFC R D+K  N++VLESL+ AGA D
Sbjct: 835  KIRFGLSRIKGIGEEVAKSIVEEREKNGPFVDIFDFCERFDTKVANKKVLESLIKAGAFD 894

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVR 951
              G  R  LL++++      Q    +++    ++FA       + K   E  +      +
Sbjct: 895  FEGIDRGILLENVEKAITTGQKARDSKSAGQNSLFALTTTPVVNVKHIYEDGTKLTEKEK 954

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-------RGNNIRLAAMVVSK 1004
               E+ VLGFY SGHPL+ YK  L+   +    E + +         G+ +++A ++   
Sbjct: 955  LRLEKEVLGFYLSGHPLNAYKKELKNK-VLKISEIIESAFGDKTFQSGSKVKIAGVIDEI 1013

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + KKT+ G+ +     S+   + +   FP
Sbjct: 1014 KYKKTKSGATMVVFQISDETGQMDVRAFP 1042


>gi|326794450|ref|YP_004312270.1| DNA polymerase III subunit alpha [Marinomonas mediterranea MMB-1]
 gi|326545214|gb|ADZ90434.1| DNA polymerase III, alpha subunit [Marinomonas mediterranea MMB-1]
          Length = 1156

 Score = 1033 bits (2672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1045 (39%), Positives = 614/1045 (58%), Gaps = 40/1045 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF+HL++H+ +SL++G + +  +L +  A + PA+AITD NNL   + F + A   GI+P
Sbjct: 3    SFIHLRLHTEFSLVDGLVKVKGLLGETEAQKMPAVAITDENNLCGFVRFYKGAMDKGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  + ++ Q  +++             + LL  + +GY+ +IE++S+ Y L Q +   
Sbjct: 63   ICGADVILEEQGEVEVR----------TRLTLLAMSNKGYKNVIEVISKGYQLGQHEGRP 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +  +W++E  +E +I L+GG  G I        ++ A+K L  +  +F DR Y+ ++R 
Sbjct: 113  IVQRAWVEE-HSEDVIALSGGVQGDIGFLLSKYKTEEAKKYLDYWMSVFPDRFYLEMERT 171

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
             R  +      V+ LA     P+VATN+  FL +ED+EAH+  + +  S  +    R  R
Sbjct: 172  ARAGEEDYIHTVIPLASEASCPVVATNDVRFLKKEDFEAHEARVCIHDSVTLDDPRRKRR 231

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + + Y K+ +EM ++F D+PEALENTVEIA+RC+  + +    LP +   +   +    
Sbjct: 232  YSEEQYFKSAAEMEAVFEDIPEALENTVEIAKRCNVDVLLGKYFLPDYPVPDGMTM---- 287

Query: 308  ENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++     +  GL+ RL     +         Q+Y  RLDFELN+I +M F GYFLIV DF
Sbjct: 288  DDFFNELSHKGLQDRLEVLIKKDGDRIANRRQEYLDRLDFELNIINQMGFPGYFLIVMDF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDFC
Sbjct: 348  IQWAKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDIDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + RD+VI YV   YG + V+QIITFG++ AKA +RDV R    PYS  D+L KLIP + 
Sbjct: 408  MENRDKVIDYVARTYGRDAVSQIITFGAMAAKAVVRDVARVQGKPYSLGDKLSKLIPFEI 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A+ ++    E    D     ++E++  LEG+ R+   HA G+VI    L+   
Sbjct: 468  GMTLK-KALEEEPALVEFIEGDEEAADVMEMAFSLEGVVRNFGKHAGGVVIAPTKLTDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598
            P+Y +      VTQ++   +E+AGL+KFDFLGLKTLT++  +L  +      +    +D+
Sbjct: 527  PLYCEEDGSGLVTQYDKNDVEEAGLVKFDFLGLKTLTVVDWALGNINALHAKEGKPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            +LI  +D  TY LL    T  +FQLES GM++ ++ + P   EDIIALV+LYRPGP+ + 
Sbjct: 587  ALIDLEDKSTYDLLQRAETTAVFQLESRGMKELIKKLLPSRFEDIIALVALYRPGPLGSG 646

Query: 659  VV--YNNRKNGKEK-----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V  + NRK+G+ +         H  + P+L+ T G+I+YQEQVMQIAQ+L+ +SL  AD
Sbjct: 647  MVDDFINRKHGRAELAFPHPDYQHDDLIPVLEPTYGIILYQEQVMQIAQVLAKFSLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  E M +Q+  F+ GA+KN I K +  NIF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  LLRRAMGKKKPEVMAEQRLIFMEGAAKNNIDKDLGGNIFDLMEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQTAW+K HYP  F+AA ++ +M N +KI  F ++ R   + +  P+VN     F V 
Sbjct: 767  VSYQTAWLKNHYPAPFMAAVLSADMQNTDKIVIFIEECRAMKLTLELPNVNESVYKFTVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            +   + Y L AIKGVG      I+EA  D PF+ + DFC RV  +K+N+RV+E+LV +GA
Sbjct: 827  EAGAVVYGLGAIKGVGEGPIEAIVEARQDGPFEHIFDFCQRV-GRKVNKRVMEALVRSGA 885

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENS 948
             D  G +R  L  S+D   K A    KN      ++F  A E+ T +    +        
Sbjct: 886  FDTIGPNRATLFASIDEALKRADQNAKNEDAGMMDLFGVAVEESTENAYDEIGIQHEWAG 945

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LG Y +GHP+D Y+  LR+       +           LA ++V  +  K
Sbjct: 946  RQRLDGEKDTLGLYVTGHPIDDYEKELRRFVRSRIVDIQPKRDTQ--VLAGLIVDMRVTK 1003

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            +++G  I ++T  + +   E   FP
Sbjct: 1004 SKRGGNIAFMTLDDRSARIEVTVFP 1028


>gi|78777108|ref|YP_393423.1| DNA polymerase III subunit alpha [Sulfurimonas denitrificans DSM
            1251]
 gi|78497648|gb|ABB44188.1| DNA polymerase III, alpha subunit [Sulfurimonas denitrificans DSM
            1251]
          Length = 1186

 Score = 1033 bits (2672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1068 (36%), Positives = 609/1068 (57%), Gaps = 53/1068 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F HL +H+ YSLL+GA  L N++ ++      ++A+TD  N+F A++F Q+  A
Sbjct: 1    MSPQP-FTHLHLHTEYSLLDGANKLTNLVKQVKELGMTSVAMTDHGNMFGAIDFYQQMRA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  I    ++               I L     +GY+ L+ L S+ ++   
Sbjct: 60   AGIKPIIGMEGYIHNGGSM-----DDKSSKQRFHICLFAKNQKGYENLMYLSSKAFIEG- 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI  + L+   +EGLI  +    G ++     ++             A+   L +
Sbjct: 114  FYYFPRINKNELR-AHSEGLICTSACLQGEVNWHLNLSNERNVKNGALGYDGAKAVALEY 172

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            K++FGD  Y+ L RH   D+ + + QV++L+   ++ +VATN++ +   ED + H+  M 
Sbjct: 173  KEIFGDDFYLELMRHGIGDQLFIDEQVLKLSKELDIKVVATNDTHYTFAEDAQYHEAFMC 232

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +  + +    +R R +  + YLK+ ++M  +F+D+PEA+E+T EI  +C+  L++  P+ 
Sbjct: 233  IGMNKLYDDPNRMRHSVHEFYLKSPAQMAMLFADIPEAIEHTQEIVEKCNLELKLGDPVP 292

Query: 293  PRF-----------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            P F           +E    D  + +      +   GLE RLA  A  K    Q+YR RL
Sbjct: 293  PNFKFSAEYARNDGLEINGSDKNEIDAEYFVYRCKIGLEHRLAHVAEEKH---QEYRDRL 349

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            DFE+NVI  MKF GY LIV DF++ AK+  I VGPGRGS AGS+ AY+L ITDIDP+++ 
Sbjct: 350  DFEMNVINSMKFPGYMLIVWDFVKVAKEKGIAVGPGRGSAAGSLVAYSLEITDIDPMKYD 409

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPD D+DF Q RR EVI YV  KYG  +VAQIITFGSL AK  +RDV
Sbjct: 410  LLFERFLNPERVSMPDIDMDFMQARRGEVIDYVVEKYGRNQVAQIITFGSLLAKGVIRDV 469

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQ---------AIADDSRFREARLADPSVDRLL 512
             R L MP S+ D++ KL+P++    ++ +         A   + + +E   +D +  R+ 
Sbjct: 470  ARVLDMPLSEADKMAKLVPDELGITLNGRTKNGEFIAGAFQKEPKLKELIDSDANAARVW 529

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            E ++KLEGL R++  HAAG+VI +  L +  P+Y+    D+ VTQ+++ ++E   LIKFD
Sbjct: 530  EFAKKLEGLKRNSGIHAAGVVISNEELWKKTPIYKPSGEDVFVTQYSLNYLEDVDLIKFD 589

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD-DHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTL ++  ++  +  R  K  +     + D + Y ++    T+G+FQ+ESSGM+  
Sbjct: 590  FLGLKTLDVIDNAIKLIKFRYNKDVIWHEIDENDPKVYDVIRGGNTVGMFQIESSGMQDL 649

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++PD  ED+IA+++LYRPGP+++ ++  +  RK+G+EKI      ++P+LK T GVI
Sbjct: 650  NKQLKPDSFEDLIAVLALYRPGPMESGMLKSFIERKHGREKIEYTFDSMEPILKNTYGVI 709

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL  +D++RR+MGKK   +M    + F  GA   G+    A  +
Sbjct: 710  VYQEQVMQIVQTVGGFSLGYSDIIRRSMGKKK--DMSVYNDEFAKGAQSQGLDYAEASKL 767

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            F+++ KFA YGFNKSH+AAYA+I++QTAW+KT+YP EF+AA +T + DN +K+ ++  + 
Sbjct: 768  FDIIEKFAGYGFNKSHSAAYAMITFQTAWLKTYYPNEFMAALLTSDKDNTDKVVRYIDET 827

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY----YSLAAIKGVGTTTARHIMEASAD-KPFDS 864
            ++  I++ PP +    ++F            + L AIKGVG      I+E  AD   F S
Sbjct: 828  KRMGIELSPPDICDSQLEFSAITKDNREIVLFGLGAIKGVGEAAVLSILETRADGGEFKS 887

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            LEDF +R++  K+N+RV+ES++ AG  D FG+SR  LL  ++ I   A+     + N   
Sbjct: 888  LEDFVNRIEPSKVNKRVVESIIKAGGFDRFGFSRKALLDQIEKIVDTAKDASMAKKNAVG 947

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            ++F  +    S ++ L            E E+  +GFY SGHPLD ++  L ++      
Sbjct: 948  SLFGDDSEITSVELKLSNSPEYELKEILEFEKETIGFYISGHPLDEFRDKLDELDYTLSS 1007

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            E  +   G        +    +K ++KGS+ G V   +     E   F
Sbjct: 1008 ELESVKDGTYAIFIGKIEEIVKKTSKKGSQFGIVNLMDFHGNIELMLF 1055


>gi|113866925|ref|YP_725414.1| DNA polymerase III subunit alpha [Ralstonia eutropha H16]
 gi|113525701|emb|CAJ92046.1| DNA polymerase III alpha subunit [Ralstonia eutropha H16]
          Length = 1173

 Score = 1033 bits (2671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1058 (39%), Positives = 614/1058 (58%), Gaps = 51/1058 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P FVHL++HS YS+++G + L + +   AAD   A+A+TD  N F  + + ++A   G
Sbjct: 5    SAPRFVHLRLHSEYSIVDGIVRLEDAVKAAAADGMGALALTDLANAFGLIRYYKEARGKG 64

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P++G  + +   ++                ++LLV    GY  L  L+SR +L +Q +
Sbjct: 65   VKPVVGADVWLTNAED----------RDKPSRLLLLVQDRRGYLNLCMLLSRAWLGNQHR 114

Query: 127  QSVRICLSWLQEIG------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                I  +W  E G        GLI L+G   G I  A    ++  A +    +  +F  
Sbjct: 115  GRAEIDPAWFLEPGEDDLPLATGLIALSGAMGGDIGMALANGNADGARRAAQHWSTVFAQ 174

Query: 181  RLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            R Y+ LQR  + G D Y   Q VQLA   +LP+VAT+   F++ +DY AH+  + +A   
Sbjct: 175  RFYIELQRAGNAGTDAYV-QQAVQLAAELQLPVVATHPVQFMTPDDYTAHEARVCIAEGE 233

Query: 239  VVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            +++   R  R T D Y K + EM ++F+D+P ALEN VEIARRC+  L++  P LP F  
Sbjct: 234  LLANPRRTRRFTTDQYFKTQDEMCALFADIPSALENAVEIARRCNLTLELGKPRLPLFPT 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
             +   +    ++ L   A  GLE RLA        +     +Y  RL+FE   I +M F 
Sbjct: 294  PDGMSL----DDYLVYMAKDGLEKRLAVLFPDEAVRESKRPEYYARLEFETGTIIKMGFP 349

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+S
Sbjct: 350  GYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVS 409

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y  VD 
Sbjct: 410  MPDFDIDFCQHGRDRVITYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDG 469

Query: 475  LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            + KLIP  P   V+++ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++
Sbjct: 470  IAKLIPFKPGKLVTIEEAKKEEPLLTERESNEEEVRQLLELAQRVEGMTRNVGMHAGGVL 529

Query: 534  IGDRPLSQLVPMY-----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            I    L+   P+Y      D  S + V+Q++   +E AGL+KFDFLGL TLT+L  +  +
Sbjct: 530  IAPGRLTDFCPLYTQGAQNDGMSGV-VSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERY 588

Query: 589  LAQRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            + +        + S IP DD   + +L T  T+ +FQLES GM+  L+  +PD  EDIIA
Sbjct: 589  IRRLDPSKADWNCSHIPLDDGPAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIA 648

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            LV+LYRPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GY
Sbjct: 649  LVALYRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGY 708

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL  AD+LRRAMGKK  EEM + +  F  GA KNG+S   A +IF+L+ KFA YGFNKSH
Sbjct: 709  SLGGADLLRRAMGKKKPEEMAQHRVMFREGADKNGLSAQQADDIFDLMEKFAGYGFNKSH 768

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AAAYA+++Y TAW+K H+P EF+AA+M+L MD+ +K+K   +D +   + ++PP VN   
Sbjct: 769  AAAYALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYEDCKLNKLAVLPPDVNASE 828

Query: 826  VDF-KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F       I Y L  IKG G      I+ A  ++PF  L DFC RVD +++NRR +E+
Sbjct: 829  YRFAPTDPKTIRYGLGGIKGSGQGAIEDILRAREERPFTDLFDFCERVDRRQVNRRTIEA 888

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKF 943
            L+ AGA D    +R QLL S+    + A+  +K  +    ++F          +  L   
Sbjct: 889  LIRAGAFDSLNDNRAQLLASVPIAMEAAE--QKAESANQVSLFDLMGDAGDAHRPELLDE 946

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------GNNIR- 996
               +     + E++ LG+YFSGH  D Y+  +R+            ++      G ++R 
Sbjct: 947  PRWSPKRTLQEEKQALGYYFSGHLFDAYRDEVRRFNKGTLAALEKEVQGNGGGFGRDVRG 1006

Query: 997  --LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +A ++   + + T++G  +  VT  +     E   F
Sbjct: 1007 KTIAGVISGVRTQMTQRGK-MVIVTLDDGTGLVEMTVF 1043


>gi|332042050|gb|EGI78388.1| DNA polymerase III, alpha subunit [Hylemonella gracilis ATCC 19624]
          Length = 1178

 Score = 1033 bits (2671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1052 (40%), Positives = 611/1052 (58%), Gaps = 46/1052 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +PSF HL++H+ +S+++GA  +++++   A D QPA+AITD NNLF A++F + A   G
Sbjct: 2    STPSFAHLRLHTEFSVVDGATRVDDVVATAAKDGQPALAITDLNNLFGAIKFYKAARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P+IG         ++ +   G  P  T   ++LLV   +GY  L EL++R +  +  K
Sbjct: 62   VKPVIGA--------DIVLEGLGTDPLATS-RLLLLVQNKQGYLNLSELLARAWTGNVHK 112

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                + L+WL+E+  EGLI+L+G  +G + +A     +  A    L F  LF  R Y+ L
Sbjct: 113  AQAIVKLAWLKELH-EGLIVLSGAQTGAVGQALVQGDTARAHDLALQFATLFPHRFYLEL 171

Query: 187  QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR  R  D    +  VQLA   +LP+VAT+   FL+EEDYEAH+  + +A   ++    R
Sbjct: 172  QRAGRADDEVHVNAAVQLAARLKLPVVATHPVQFLTEEDYEAHEARVCIAEGEILGNPRR 231

Query: 246  -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              + T + Y K+ ++M ++F+DLP AL NT+EI +RC+  L +  P LP F       + 
Sbjct: 232  VRKFTKEQYFKSAAQMQALFADLPSALANTLEIGKRCNLTLVLGKPQLPNFPIPGGLSM- 290

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+  R  ++ GLE RL         +      Y +RL+FE+N I +M F GYFLIV 
Sbjct: 291  ---EDYFRKVSLEGLEERLSHLYPEPAKRDAERPRYLERLEFEINTILKMGFPGYFLIVG 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQWAK N  PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFIQWAKANGCPVGPGRGSGAGSLVAYALKITDLDPLAYKLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI YV+ +YG E V+QI TFG++ A+AA+RDVGR + M Y+  D + KLIPN
Sbjct: 408  FCQANRDRVIEYVKERYGREAVSQIATFGTMAARAAIRDVGRVMDMSYTFCDGISKLIPN 467

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   +++  AI +     E +  +  V  LLE++QKLEG+ R+   HA G++I    L+
Sbjct: 468  KPGQHITIDGAIKEVPELAERQAKEDEVKNLLELAQKLEGMTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVD 597
               P+Y+   SD  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F+ +R        
Sbjct: 528  DFCPLYQQPGSDAAVSQYDKDDVEAVGLVKFDFLGLATLTILEIAREFIMKRHPGQEHFS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               IP DD  TY L     T  +FQ ES GM+  L   +P  +ED+IAL +LYRPGP+D 
Sbjct: 588  FEAIPLDDKATYQLFQDGKTEAVFQFESRGMQGMLRDAKPTRLEDLIALNALYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+E+I   HPL+  ML ET G+++YQEQVMQ AQ+L GYSL  AD+LRRAM
Sbjct: 648  IPSFVARKHGREEIEYPHPLVADMLSETYGIMVYQEQVMQTAQILGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM + +E F  GA++NGI++  A  IF+L+ KFA YGFNKSHAAAY++++Y TA
Sbjct: 708  GKKKAEEMAQHREIFRKGAAQNGIAQDKADEIFDLMEKFAGYGFNKSHAAAYSLLAYHTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIY 836
            W+K HY  EF  A+MT+EMD+ +K+K   +DA++  +   PP VN     F+ V D  I 
Sbjct: 768  WLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAQKMGMHFEPPDVNRGHYRFEPVSDTVIR 827

Query: 837  YSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKKLNRRVLESLV 886
            Y L A+KG G      I+ A              PF SL DFC RVD  ++N+R +E+L+
Sbjct: 828  YGLGAVKGTGQQAIEAIVAAREGRGEGPAGSECGPFKSLYDFCKRVDRARINKRTVEALI 887

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-------AHEKGTFSDKIT 939
             AGA D    +R +LL S D  + +              +F           G+ + +  
Sbjct: 888  KAGAFDSLHLNRAELLASTD--RAFDFAAATAANANQGGLFDLMADDGGDSHGSSTQEPE 945

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
            L +        R  +E+  +GFYFSGH  D     +R+   +   E + T       LA 
Sbjct: 946  LVEALPWGVKERLSHEKTAVGFYFSGHLFDEVAHEVRRFAKRELAELIDTREPQ--LLAG 1003

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +V   +    ++G R+      + +   +A  
Sbjct: 1004 IVSDLRVINGQRG-RLALFKLDDKSAVLDARV 1034


>gi|294792867|ref|ZP_06758014.1| DNA polymerase III, alpha subunit [Veillonella sp. 6_1_27]
 gi|294456766|gb|EFG25129.1| DNA polymerase III, alpha subunit [Veillonella sp. 6_1_27]
          Length = 1135

 Score = 1033 bits (2671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1032 (35%), Positives = 601/1032 (58%), Gaps = 27/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ +SLL+G   L +++ +     QPA+AITD  N+++A+ F ++  A G++P
Sbjct: 3    PFVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +   +              +  ++LL  T EGY+ L+++VS+        +  
Sbjct: 63   IIGCEVYVTENNRFDRPE--GRSRERLKHLILLAETMEGYRNLVKIVSKASTEGMLYR-P 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R     L++  ++G+I L+    G I +    ++ + A++ +  + + +  D  ++ +Q 
Sbjct: 120  RADRDLLRQY-SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQN 178

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +  + + ++++L+  + L +VA+N+  ++ +ED +A D+ + ++     ++ DR +
Sbjct: 179  HGLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLK 238

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  YLK+  EM  +F  +P A+ENT++IA RC+         LP F   E +     
Sbjct: 239  FPNDEFYLKSGDEMAELFGHIPGAIENTLKIAERCNVEFNFDEHHLPHFDVPEGE----T 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  LR      +           G  +++ ++RLD+EL+VI  M F  YFLIV D++++
Sbjct: 295  SKTYLRKVCEREIPRLY-------GETSEELQKRLDYELDVIGTMGFEDYFLIVWDYVRY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++
Sbjct: 348  AREHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEK 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R + I YV  KYG  RV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+    
Sbjct: 408  RGQAIEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELG-- 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            ++L         +    +D +V  L +  +KLEG+ R++STHAAG+VI   PL   VP+ 
Sbjct: 466  ITLDKALQGKDLKALYESDSNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPVQ 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                    VTQ++   IE+ GL+K DFLGL+TLT++  +L  +   RG+ +DL  IP DD
Sbjct: 526  NANDEGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
                 +LT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +V  + +
Sbjct: 585  AAACDILTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFID 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK + 
Sbjct: 645  RRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKES 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  Q+E FI G+  NGI +++A  +F+LL  FA YGFNKSH+AAYA I+YQTA++K HY
Sbjct: 705  VLKAQRESFIQGSINNGIEESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHY 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              EF+AA+MT  M N++K+  +    ++ N++++ P +N     F V D+ I + L  IK
Sbjct: 765  FPEFMAATMTSFMQNMQKLTYYINACKKHNVKVLGPDINYSERSFAVQDDSIRFGLGGIK 824

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      ++        +  + DFC RVD++ +N+R+LESL+  GA+D F  +R QLL
Sbjct: 825  NVGDNAIDRLIRERNEHGLYTDIVDFCKRVDNRVVNKRLLESLIRCGAMDGFQENRNQLL 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
               ++ Q      +K+      N+F   +    D I +      +   + ++E+   GFY
Sbjct: 885  HMYESAQAVGAKEQKDAAMGTMNLFGDMEEAV-DFIPVPTVEDLSEDDKLKDEKEYTGFY 943

Query: 963  FSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             +GHPL  Y   L  +  +    E+     G  I    ++ +K  + T++   +  +   
Sbjct: 944  ITGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKSDRMTKRNELMSILRIE 1003

Query: 1022 EPAKEYEANFFP 1033
            + +       FP
Sbjct: 1004 DYSGAANVVAFP 1015


>gi|261367002|ref|ZP_05979885.1| DNA polymerase III alpha subunit [Subdoligranulum variabile DSM
            15176]
 gi|282571120|gb|EFB76655.1| DNA polymerase III alpha subunit [Subdoligranulum variabile DSM
            15176]
          Length = 1150

 Score = 1033 bits (2671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1023 (36%), Positives = 567/1023 (55%), Gaps = 40/1023 (3%)

Query: 32   ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91
            + + + A  Q A AITD   ++  + F   A AAGI+PIIGC++ +  +      N+   
Sbjct: 1    MFEHLKAMGQTACAITDHGVMYGCVAFFDAAKAAGIKPIIGCEVYVATRTRFDKVNR--- 57

Query: 92   PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151
                   ++LL     GY+ LI++VS  +L        RI    L E   EGLI L+   
Sbjct: 58   -IDGNSHLILLCKNEVGYRNLIKMVSAGFLEG-FYSKPRIDKDLL-EQHHEGLICLSACL 114

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHEL 209
            +G I +A      + A++  L ++ LF  +  Y+ LQ H    D+    Q+++LA    +
Sbjct: 115  AGEIPKAILAGDYERAKQTALYYRDLFGAENYYIELQDHGLEEDQVVLPQLIRLARETGI 174

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLP 268
            P+VATN++ ++++ED +   +L+ +     ++  DR     D  YLK+  EM  +FS +P
Sbjct: 175  PMVATNDAHYITKEDSKMQSILLCIQTGKTIADADRMEFQTDEFYLKSADEMYELFSMVP 234

Query: 269  EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
            EA ENT +IA +C+F        LP F   +      E +         GLE R      
Sbjct: 235  EACENTNKIAEQCNFEFTFGETKLPYFRAPDGM----ENQAYFEKLCWEGLERRYP---- 286

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
              G      R+RL +E+ V+  M ++ Y+LIV DFI +AK  +IPVGPGRGSGAGS+ AY
Sbjct: 287  --GKVTDALRERLAYEIKVVKNMGYTNYYLIVYDFINYAKSRDIPVGPGRGSGAGSLAAY 344

Query: 389  ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
             + ITDIDP+R++L+FERFLNP+R+SMPDFD+DFC +RR EVI YV  KYG + VAQI+T
Sbjct: 345  CVGITDIDPIRYNLIFERFLNPERVSMPDFDVDFCYERRQEVIDYVNEKYGRDHVAQIVT 404

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
            FG++ A+AA+RDVGR + M Y  VD++ KLIP +    +  +A+      +    AD  V
Sbjct: 405  FGTMAARAAVRDVGRVMGMAYQDVDKVAKLIPMELKMTLQ-KALDVSPDLKAMYEADAQV 463

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
              L++ S K+EG+ RHASTHAAG+VI   P ++ VP+       LPVTQFNM  IE+ GL
Sbjct: 464  RELIDTSLKVEGMPRHASTHAAGVVITREPATEYVPL--STNDGLPVTQFNMVEIERLGL 521

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            +K DFLGL+TLT++  +   + ++  +  ++ I +DD +TY +L    T GIFQLES+GM
Sbjct: 522  LKMDFLGLRTLTVIHDTETAVRRKDPEFRMATISYDDPDTYAMLAKGETEGIFQLESTGM 581

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
             Q L  M+P  +EDIIAL+SLYRPGP+D+I  Y   +    KI    P +  +L  T G 
Sbjct: 582  TQVLVSMRPRNLEDIIALISLYRPGPMDSIPTYLRNRREPGKISYKTPQLAHILDVTNGC 641

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS----------GASK 738
            I+YQEQVMQI + L+G+S  +AD +RRAM KK  + M+ ++E F+           G  K
Sbjct: 642  IVYQEQVMQIFRELAGFSFGQADNIRRAMSKKKHKVMEAEREHFVHGCTEPGKECAGCVK 701

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NGI + +A  I++ +  FA Y FNKSHAA YA +++QTA++K HYP EF+AA +T  +DN
Sbjct: 702  NGIPEDVANEIYDEMISFASYAFNKSHAACYAYVAFQTAYLKCHYPHEFMAALLTSVLDN 761

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              K+ ++  + ++  I+++ P +N     F    + I + L A+K VG      +++   
Sbjct: 762  TSKVIEYTTECQRLGIKVLQPDINVSRGGFTADGDCIRFGLNAVKSVGRNLIDAVVKERQ 821

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
            ++P+  L DFC R+   +LNRR LE+L+ +GA D    SR  +L+ ++ I K  +   + 
Sbjct: 822  NRPYRGLYDFCRRMYGNELNRRALENLIKSGAFDALEPSRRAMLECVEGILKSVETDMRQ 881

Query: 919  RTNKHENIFAHEKGTFSD----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
                  ++F    G   +       + K S   +S   + E+ V G Y SGHPLD Y+  
Sbjct: 882  NLEGQMDLFGMMSGESQETAINDYKVPKLSEYPTSDLLKMEKEVSGLYLSGHPLDAYREQ 941

Query: 975  LRKMGIKGYEESVATI----RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            + ++      +             + +   VV  +   T+  + + + T  +     E  
Sbjct: 942  IAQISTCTIAQLQGEEAKQFDNQTVTILCTVVKNKIMTTKSNTLMAFTTIEDLTGTMELL 1001

Query: 1031 FFP 1033
             FP
Sbjct: 1002 VFP 1004


>gi|296129453|ref|YP_003636703.1| DNA polymerase III, alpha subunit [Cellulomonas flavigena DSM 20109]
 gi|296021268|gb|ADG74504.1| DNA polymerase III, alpha subunit [Cellulomonas flavigena DSM 20109]
          Length = 1187

 Score = 1033 bits (2670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1076 (34%), Positives = 555/1076 (51%), Gaps = 55/1076 (5%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +     + PSFVHL VHS YS+L+GA  +  +LD+     Q A+AITD   LF A EF Q
Sbjct: 1    MAAGGTEDPSFVHLHVHSEYSMLDGAARIGEMLDEAKRLGQTAMAITDHGYLFGAFEFWQ 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGK-----------TPFPTVPSIVLLVSTAEGY 109
            KA   GI+PIIG +  +    +    N+ +           +       + LL  T EG 
Sbjct: 61   KATERGIKPIIGVEAYVTPGTSRFDQNRVRWGEAHQAADDVSARGAYTHLTLLSRTTEGM 120

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L  + S   +  Q  +  R+    L      GLI  +G  SG I           A +
Sbjct: 121  HNLFRMGSLASVEGQMGKWPRMDRELLSRYAD-GLIATSGCPSGEIQTRLRLGHVDEALR 179

Query: 170  RLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                 + +F  +  +V +  H    +R     ++++A     P+VATN+  +  EED  A
Sbjct: 180  AAGELQDIFGKEHFFVEVMDHGLEIERRVIKDLLRIAEGIGAPIVATNDLHYTREEDAHA 239

Query: 228  HDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            H+VL+AV   + + +                +Y+K+ +EM   +++LPEA +NT+ +A +
Sbjct: 240  HEVLLAVQSGSTLDEPTSDQGGSRFAFGGTGYYVKSAAEMRRTWAELPEACDNTLLVAEQ 299

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            C       A  +PRF     ++    E++    +   GL  R        G      R++
Sbjct: 300  CEVKFNTGANYMPRFPVPAGEN----EDSWFVKEVENGLLRRYH------GAIPDHVRKQ 349

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
             D+E  VI ++ FSGYFL+VADFI WAKK  I VGPGRGS AGS+ +YA+ IT++DPL  
Sbjct: 350  ADYETGVITQLGFSGYFLVVADFINWAKKQGIRVGPGRGSAAGSMASYAMGITELDPLEH 409

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             L+FERFLNP+R+S PD D+DF + RR EVIRYV  KYG +RV QI+T+G+++AK AL+D
Sbjct: 410  GLIFERFLNPERVSWPDVDVDFDERRRGEVIRYVTEKYGDDRVCQIVTYGTIKAKQALKD 469

Query: 461  VGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRL 511
              R L  P++  ++L K +P       + L  + D           FR+   ADP   R+
Sbjct: 470  ASRVLGFPFAMGEKLTKAMPPPVMGKDIPLSGMYDPEHPRYAEADEFRQVVAADPEAQRV 529

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            LE ++ LE L R    HAAG+++   PL  ++P+ +  +    +TQF+    E  GLIK 
Sbjct: 530  LETARGLENLKRQWGVHAAGVIMSSEPLLDIIPIMKRPQDGAIITQFDQPASESLGLIKM 589

Query: 572  DFLGLKTLTLLQKSLDFLAQRGVKVDL-SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            DFLGL+ LT+L  +L+ +   G    L   +  DD  TY LL    TLG+FQL+   MR 
Sbjct: 590  DFLGLRNLTILDDALENIVMNGKPPILIEEVALDDPPTYELLGRGDTLGVFQLDGGPMRS 649

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLI----DPMLKE 684
             L  M+PD  ED+ A+++LYRPGP+       Y  RKNG ++I  IHP +    + ++  
Sbjct: 650  LLRQMRPDNFEDVSAVIALYRPGPMGMNSHTNYALRKNGLQEIEPIHPELVEPLEDVVGV 709

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+I+YQEQV + AQ L+GYSL +AD+LRRAMGKK KE +DK+   F +G  + G S  
Sbjct: 710  TYGLIVYQEQVQRAAQKLAGYSLGQADLLRRAMGKKKKEVLDKEFVPFQAGMRERGYSDA 769

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
                ++++L  FA Y FNK+H+AAY V+SY TA++K ++P E++AA +T   D+ +K   
Sbjct: 770  AIQAVWDVLVPFAGYAFNKAHSAAYGVVSYWTAYLKANFPTEYMAALLTSVRDDKDKSAL 829

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFD 863
            +  + R   I ++PP VN+   +F      I + L A++ VG      I+ A  +   F 
Sbjct: 830  YLGECRHMGITVLPPDVNSSSANFTAVGKDIRFGLTAVRNVGANVVDAIVAAREEKGAFT 889

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            S  DF  +V +   N+R +ESL+ AGA D  G++R  LL   +        V++      
Sbjct: 890  SFTDFLDKVPAVVCNKRTIESLIKAGAFDSLGHARRALLLVHEQAVDAVIDVKRKEATGQ 949

Query: 924  ENIFAHEKGTFSD----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
             ++FA   G         + +      +   R   E+ +LG Y S HPL   + +L    
Sbjct: 950  FDLFADLGGGDETGTGIAVQIPDLPDWDKKQRLAFEREMLGLYVSDHPLSGLEHVLSAQA 1009

Query: 980  IKGYEESVA---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                    A      G+ + +A +V S Q+K +++G+    VT  +     E  FF
Sbjct: 1010 DVSIATLNADTERPDGSTVVVAGLVTSLQRKMSKQGNPWAAVTLEDMEGGVEIMFF 1065


>gi|167745888|ref|ZP_02418015.1| hypothetical protein ANACAC_00582 [Anaerostipes caccae DSM 14662]
 gi|167654403|gb|EDR98532.1| hypothetical protein ANACAC_00582 [Anaerostipes caccae DSM 14662]
          Length = 1153

 Score = 1033 bits (2670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1047 (35%), Positives = 574/1047 (54%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +  ++         +IAITD   ++  ++F + A A GI+P
Sbjct: 2    SFTHLHVHTEYSLLDGSSKIKELVHHTKELGMDSIAITDHGVMYGVIDFYKAAKAEGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +      +   + +        +VLL     GY  L+++VSR +         
Sbjct: 62   ILGCEIYVTPGSRFE--KEARQGSSNYFHLVLLAENDRGYHNLMKIVSRGFTEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L+   +EGLI L+    G I         + A++  L F++++     ++ LQ 
Sbjct: 119  RVDYEVLERY-SEGLIALSACLGGEIPTYIREGDYEKAKETALRFERIYGKGNFFLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++    S +++++    + LVATN+  +   ED E HD+L+ +     V+ +DR R
Sbjct: 178  HGISEQTTVNSALIKMSKETGIELVATNDIHYTFAEDVEPHDILLCIQTGKKVADEDRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +YLK+  EM  +F    +A+ENT +IA RC+  +      +P+F   E D     
Sbjct: 238  YEGGQYYLKSPEEMERLFPYARQAVENTGKIAERCNVEIIFGEQKVPKFDVPEGD----T 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     G+  R            +   +        I  M +  YFLIV DFI +
Sbjct: 294  STSYLRKLCEEGICRRYDDVTEELRERLEFELK-------TIENMGYVDYFLIVWDFIHY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK++ I VGPGRGS AGS+ +Y L ITDI+P+++ LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 347  AKEHGIAVGPGRGSAAGSIVSYCLEITDIEPIKYQLLFERFLNPERVSMPDIDIDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG ++V QIITFG++ A+A +RDVGR L +PY++VD + K++PN+    
Sbjct: 407  RQEVIDYVVEKYGKDKVVQIITFGTMAARAVIRDVGRVLDIPYAKVDGIAKMVPNELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A+      ++A   D     L+++S++LEGL RHAS HAAG+VIG   + + VP+ 
Sbjct: 467  IE-GALKKSPDLKKAYAEDEETKYLIDMSRRLEGLPRHASMHAAGVVIGKDSIDEFVPLA 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            +    D   TQF M  IE+ GL+K DFLGL+TLT++Q ++  + +R     D++ I  +D
Sbjct: 526  KGA-DDAVTTQFTMTTIEELGLLKMDFLGLRTLTVIQDAVHLIEKREGKPFDINQIDTED 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             + Y +++   T G+FQLES GM+  ++ ++P+ +E+IIA +SLYRPGP+D I  Y   K
Sbjct: 585  PKVYEMISQGRTEGVFQLESGGMKAFMKELKPESLEEIIAGISLYRPGPMDFIPRYVKGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
              K+ I    P ++ +LK T G I+YQEQVMQI   L+GY+L  +D++RRAM KK  + M
Sbjct: 645  VDKDSIRYDCPQLEKILKPTYGCIVYQEQVMQIVMELAGYTLGRSDLVRRAMSKKKGDVM 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K+++ F+         G  KNGI +  A +I++ +  FA Y FNKSHAAAYAV++YQTA
Sbjct: 705  VKERKNFVYGNEKEDIPGCIKNGIDEKTANHIWDEMLDFAKYAFNKSHAAAYAVVAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            +++ HY  EF+AA +T  + N  K+ ++    R+  I+I+PP +N     F V D  I Y
Sbjct: 765  FLRCHYQKEFMAALLTSVLGNTNKVSEYIYACRKMGIKILPPDINKGEGAFSVDDGCIRY 824

Query: 838  SLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+AIK +G      I+   ++   + SL D   R+ SK++N+R +ESL+ +GALD  GY
Sbjct: 825  GLSAIKSLGKPVIEEILRERSEGGSYKSLRDLIERLSSKEMNKRTVESLIKSGALDELGY 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +    +I +  Q   K+  +   +I  F  E    + +I        +   R   
Sbjct: 885  TRKQQMFVYASILESIQKERKHEISGQMSILDFMSEDQQKNFEIEYPDVGEFDKEQRLAM 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-------RLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+    IL ++      +  A    G  +        +  ++   + 
Sbjct: 945  EKEVLGIYVSGHPLEDDVEILERLTTASTADFTAEEDTGQPVLRDKQTCIIGGIISDMKV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K TR    + ++T  +     E   FP
Sbjct: 1005 KLTRTNQNMAFLTLEDLMGTVEVIVFP 1031


>gi|114800101|ref|YP_760471.1| DNA polymerase III subunit alpha [Hyphomonas neptunium ATCC 15444]
 gi|114740275|gb|ABI78400.1| DNA polymerase III, alpha subunit [Hyphomonas neptunium ATCC 15444]
          Length = 1140

 Score = 1033 bits (2670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/1033 (45%), Positives = 643/1033 (62%), Gaps = 26/1033 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F+HL + SS+SLLE  ++  ++         PA+A+TD N LF ALE S K   
Sbjct: 1    MTK-PVFIHLAIRSSFSLLESMITPADLAKWCKQYSMPAMAVTDRNCLFGALELSIKLSD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPI+ C  D+              P   +  +        GY+RL+ L SR YL   
Sbjct: 60   YGVQPIMACCFDVTDGS----------PKAELFRLTAYAQDDVGYKRLMFLSSRAYLEAD 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 R+   +L E  TEGLI+LTGG+ G + R         A   L T    +  R YV
Sbjct: 110  D-GVPRLHKKYLLE-NTEGLILLTGGAEGEVARHILKGRLADARTELSTLATAYPGRCYV 167

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             + RH   +  + E+ +V+LAY   LPLVAT+++ FL  ED  AHD +M +A+   + Q 
Sbjct: 168  EITRHGTQEEIKSETGLVELAYELGLPLVATHDARFLKPEDVTAHDAMMCIANGQYLGQD 227

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR RV PD YLK+  EM  +F+DLPEA+ NT EIA RCS   +   PILP F ++     
Sbjct: 228  DRKRVEPDQYLKSPEEMEVLFADLPEAIANTSEIAIRCSVRAETRKPILPNFSKE----- 282

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             + E  EL  +A  GLE RLA+ A       Q Y  RL++EL +I RM F GYFLIV+DF
Sbjct: 283  GRSEGEELALQARQGLEERLAE-ADRLYAERQVYLDRLEYELGIIDRMGFPGYFLIVSDF 341

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N IPVGPGRGSGAGS+ A+ L ITD+DPLRF LLFERFLNP+R+SMPDFD+DFC
Sbjct: 342  IKWAKANGIPVGPGRGSGAGSLVAWVLLITDLDPLRFDLLFERFLNPERVSMPDFDVDFC 401

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q+RR EVIRYV+ KYG + VA IITFG+LQAKA +RDVGR +QMPY QVDRL KLIP +P
Sbjct: 402  QERRGEVIRYVREKYGADSVAMIITFGTLQAKAVVRDVGRVMQMPYGQVDRLAKLIPFNP 461

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A P +L +AIA + +F +   AD  V  L++ ++ LEG+YR+A THAAG+VI DRPL +L
Sbjct: 462  AKPPTLDEAIAAEPKFDDEIAADARVGELIDTARALEGMYRNAGTHAAGVVIADRPLVEL 521

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+Y D R+DLP TQFNMK+ E AGL+KFDFLGLKTLT++ ++L+F+ + G  V  +   
Sbjct: 522  VPLYNDPRADLPATQFNMKYAEMAGLVKFDFLGLKTLTVIDRALNFIRRDGGDVGPAWRS 581

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  TY L+ +  TLG+FQLE +GMR  L  ++P+ IED+IA++SLYRPGP++NI VY 
Sbjct: 582  MDDPATYELMASGETLGVFQLEGAGMRDTLRRVRPNNIEDLIAIISLYRPGPMENIPVYV 641

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K     +   HP + P+L+ T GV +YQEQVM++AQ ++GYSL EAD+LRRAMGKK  
Sbjct: 642  QGKEDPASVRYQHPDLKPVLEATYGVPVYQEQVMRMAQEIAGYSLGEADLLRRAMGKKKL 701

Query: 723  EEMDKQKERFISGASKN-GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            EEM  Q+ RF+ GA+ N G+  ++A  IF+ + KFA YGFNKSHAAAYA+I Y TA++K 
Sbjct: 702  EEMIAQRRRFVEGAAANKGMKDSLANEIFDTMEKFAGYGFNKSHAAAYALIGYHTAFLKC 761

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP EFLAASM+L++ N +K+  F Q+A++  + ++ P +N+   DF V ++ I Y+L A
Sbjct: 762  HYPKEFLAASMSLDIGNTDKLAAFFQEAKRLRLHVLAPDINSSQPDFDVNEDGIVYALGA 821

Query: 842  IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IKGVG    +H+        PF  L DF  RVD K +N++ LESL  +GALDC   +R +
Sbjct: 822  IKGVGVEAMKHVSAVRSEGGPFKDLYDFAERVDPKHVNKKALESLAKSGALDCLEGNRAR 881

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +  + +Y     ++R+     +F   +     +          +  + + E + +G
Sbjct: 882  VFAVVPMLAQYCASHAEDRSGGQGGLFGESEPAL--RPEFPPSRPWTAQQKLDEEFKSIG 939

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            FYFSGHPLD     + +  +    E       G  + +  +V ++  K +++G +  ++T
Sbjct: 940  FYFSGHPLDDVLTSIDRDRVTLAMEVHERAGDGKPLEMIGIVRTRNDKPSKRGGKFAFLT 999

Query: 1020 FSEPAKEYEANFF 1032
             S+P  E E   F
Sbjct: 1000 ISDPTGELEMMVF 1012


>gi|260772237|ref|ZP_05881153.1| DNA polymerase III alpha subunit [Vibrio metschnikovii CIP 69.14]
 gi|260611376|gb|EEX36579.1| DNA polymerase III alpha subunit [Vibrio metschnikovii CIP 69.14]
          Length = 1109

 Score = 1032 bits (2669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/997 (40%), Positives = 577/997 (57%), Gaps = 37/997 (3%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F   A + GI+PIIG             T +       +  I +L     GY+ L  L
Sbjct: 1    MKFYGTAHSCGIKPIIGA----------DFTLRSDEFADELTKITILAKNNIGYKNLTLL 50

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +S  YL    +    I   WL +   EGLI+L+GG +G I RA    +  +AEK +  ++
Sbjct: 51   ISEAYLRGHVQHQPVIDKQWLVK-HAEGLIILSGGKNGEIGRALLKGNQALAEKCVEFYQ 109

Query: 176  KLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
              F D  Y+ L R    D        + LA   +LP+VATN  +FL+ E ++AH++ +A+
Sbjct: 110  TYFADHFYLELVRTGRADEESYLHFALDLAEQTQLPVVATNEVVFLNAEQFDAHEIRVAI 169

Query: 235  AHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
                 +    RP   +P  YL+   EM  +F+D+P+ALEN+VEIA+RC+  +++    LP
Sbjct: 170  HDGYTLEDPRRPKNYSPQQYLRTEQEMCELFADIPQALENSVEIAKRCNVTVRLGEYFLP 229

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
             F            E  L  K+  GLE RL         +     +Y +RLD EL VI +
Sbjct: 230  NFPTG-----GLAIEEFLVVKSKQGLEERLEFLFPDPQVRAERRPEYDERLDIELQVINQ 284

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 285  MGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 344

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFD+DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+ 
Sbjct: 345  ERVSMPDFDVDFCMDKRDQVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFG 404

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
             VDR+ KLIP DP   +  +A   +   +E   AD  V  L++  + LEG  R+A  HA 
Sbjct: 405  FVDRISKLIPPDPGMTLE-KAFKAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAG 463

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  + 
Sbjct: 464  GVVISPTTITDFAPLYCDAEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGLIN 523

Query: 591  QRGV-----KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             R        + +  IP  D  ++ LL    T  +FQLES GM++ ++ ++PDC EDIIA
Sbjct: 524  PRRTALGEEPLRIEAIPLQDEASFRLLQKSETTAVFQLESRGMKELIKRLKPDCFEDIIA 583

Query: 646  LVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQI 698
            LV+L+RPGP+ + +   + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQI
Sbjct: 584  LVALFRPGPLQSGMVDNFIDRKHGREVISYPDEKWQHESLKEILEPTYGIILYQEQVMQI 643

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA 
Sbjct: 644  AQVLAGYTLGGADMLRRAMGKKKPEEMAKQRAIFKEGAENNGVDGELAMKIFDLVEKFAG 703

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGFNKSH+AAYA++SYQT W+KTHYP EF+AA MT +MDN EK+     + ++  + ++P
Sbjct: 704  YGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECQRMGLTVLP 763

Query: 819  PSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKK 876
            P +N+    F V  +  I Y + AIKGVG      I+++   +  F  L DFC+R+D KK
Sbjct: 764  PDINSGLYSFNVDENGAIVYGIGAIKGVGEGPIEAILDSRSKNGYFKDLFDFCARIDLKK 823

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFS 935
            +N+RV+E L+ AGALD  G  R  ++ SLD+  K A    +       ++F         
Sbjct: 824  VNKRVIEKLILAGALDRLGPHRAAMMASLDDAVKAASQHHQAEAFGQADMFGVLTDAPEE 883

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
             +    +       V  E E+  LG Y +GHP++ Y   L K       E+  T R  ++
Sbjct: 884  VEQKYTQVPPWPEKVWLEGERETLGLYLTGHPINQYLKELPKYTSCRLNEATPTRRDQSL 943

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             LA +V++ +   T++GSRIG +T  + +   E   +
Sbjct: 944  TLAGLVIAARVMTTKRGSRIGLMTLDDRSGRIEVMLY 980


>gi|227494658|ref|ZP_03924974.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
 gi|226831840|gb|EEH64223.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
          Length = 1176

 Score = 1032 bits (2668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1066 (33%), Positives = 572/1066 (53%), Gaps = 48/1066 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL  H+ YS+L+GA  +  ++ + A  +QPA+AITD   LF A EF  +A  
Sbjct: 1    MAVTDPFVHLHNHTEYSMLDGASKIAPMVKEAARLEQPALAITDHGYLFGAYEFYSEARK 60

Query: 65   AGIQPIIGCQLDIDMQ-DNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLI 113
            AGI+PIIG +  +         T              +       + LL  T EG   L 
Sbjct: 61   AGIKPIIGLEAYVTPGTSRFDRTRVRWGEEWQASDDVSARGAYTHLTLLAETTEGMHNLF 120

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L S   L  Q  +  R  +  L++  ++GLI  TG  S  +           A +    
Sbjct: 121  RLGSMASLDGQWGKWPRADMELLEQY-SKGLIAFTGCPSSEVQTRMRLGQWDKAVEAAGR 179

Query: 174  FKKLF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             + +F  + ++V    H    ++   + +++L+    +P+V TN++ +++ +D +  D L
Sbjct: 180  LQDVFGKENVFVEFMDHGIDIEKRTRADLIKLSNQLNIPMVVTNDAHYVTADDRDIQDAL 239

Query: 232  MAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +     +   DR +     +Y+++   M   + D+P+A +NT+ IA RC+        
Sbjct: 240  LCINSGVTLDTPDRFKFDGSGYYIRSSESMRRDWEDIPQACDNTLLIAERCNVEFTEGVS 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             +PRF   E +D    E +    +   GL +R  QG         + R++ D+E+ +I +
Sbjct: 300  YMPRFPVPEGED----ETSWFIKEVERGLHIRFPQGI------PDNVRKQADYEVGIINQ 349

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            MKF GYFL+V+DFI+WAKK  I VGPGRGSGAGS+ AYA+ ITD++PL   LLFERFLNP
Sbjct: 350  MKFPGYFLVVSDFIRWAKKQGIRVGPGRGSGAGSMVAYAMQITDLNPLDHGLLFERFLNP 409

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFD+DF + RR EVI YV  KYG +RVAQ++T+G ++AK AL+D  R L  PY+
Sbjct: 410  ERVSMPDFDVDFDERRRGEVIEYVTRKYGDDRVAQVVTYGKIKAKQALKDSCRVLGRPYA 469

Query: 471  QVDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
              ++L K +P       +          +   + + FR     +P    ++++++ LEGL
Sbjct: 470  LGEQLTKAMPPSVMGKDIPVSGIFDKEHKRYEEAAEFRRYYNENPETHPIVDMAKGLEGL 529

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HA  +++   PL Q++P+ +  +    +TQF+    E  GL+K DFLGL+ LT+
Sbjct: 530  TRQWGVHACAVIMSSVPLQQVIPLMQRPQDGATITQFDYPTCESLGLLKMDFLGLRNLTV 589

Query: 582  LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +LD + +    + D+  +  +D +TY LL+   TLG+FQL+  GM++ L+ M PD  
Sbjct: 590  ISDALDNIERNGKERPDIDHVELNDPKTYQLLSAGETLGVFQLDGDGMQKLLKRMAPDNF 649

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQEQ 694
            EDI A+ +LYRPGP+  D+   Y +RKNG+ +I  IHP +      +L  T G+I+YQEQ
Sbjct: 650  EDISAVGALYRPGPMGADSHNKYADRKNGRAEIEPIHPELAEPLKEILGTTYGLIVYQEQ 709

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VM IAQ ++GYSL +AD+LRRAMGKK KE +DK+   F +G  + G S+     ++E+L 
Sbjct: 710  VMAIAQKVAGYSLGQADLLRRAMGKKKKEILDKEYVPFHAGMIERGYSEDCIKTLWEILV 769

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F++Y FNKSH+AAY ++SY TAW+K +YPVE++A+ +T + DN +K+  +  + R+  I
Sbjct: 770  PFSNYAFNKSHSAAYGLVSYMTAWLKANYPVEYMASLLTSQKDNKDKLALYLSECRRMGI 829

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873
             ++PP VN    +F    N I + LAAI+ VG      I+EA  +   +DS   F  +V 
Sbjct: 830  TVLPPDVNVSEANFTAVGNDIRFGLAAIRNVGINVVEGIVEARKEKGKYDSFASFLDKVP 889

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
                N+R +ESL+ +GA D     R  L+   +   + A  +++N      ++F     +
Sbjct: 890  VAVCNKRTIESLIKSGAFDSVADCRRALVAVHEEAVESAVKLKRNEAAGQFDLFGAMFDS 949

Query: 934  FSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--- 987
               +   + +          +  +E+ +LG Y S HPL   +  L +   +   + +   
Sbjct: 950  AEVQMMTVDVPNMPDWPKHEKLSHERDMLGLYVSDHPLSGIQKALERYQDEQIAQILTSE 1009

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +     +++A ++ +   K TRKG      T  + +   +  FFP
Sbjct: 1010 TSRDRQMVKVAGLITAVTIKTTRKGELWAIATLEDLSGSIDLLFFP 1055


>gi|33865566|ref|NP_897125.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 8102]
 gi|33632735|emb|CAE07547.1| DNA polymerase III, alpha subunit [Synechococcus sp. WH 8102]
          Length = 1172

 Score = 1032 bits (2668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1052 (36%), Positives = 589/1052 (55%), Gaps = 39/1052 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++      PAIA+TD   ++ A+E  +    + ++P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPAMVERAKELGMPAIALTDHGVMYGAIELLKLCKGSDLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ +          + +  +     +V+L   A GY+ L++L S  +L     + +
Sbjct: 62   IIGNEMYVINGSIDDPQPKKEKRY----HLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 117

Query: 130  --RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              R C+   L +  +EGLI+ T    G + +A       VA      ++++FG+  Y+ +
Sbjct: 118  FSRACIDKHLLKTYSEGLIISTACLGGELPQAILRGRPDVARNVARWYQEVFGEDFYLEI 177

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    DR    ++V++A    + LVATN++ +LS++D EAHD L+ V    ++S + R
Sbjct: 178  QDHGSPEDRIVNVELVRIAQELGIQLVATNDAHYLSKQDVEAHDALLCVLTGKLISDEKR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKE 299
             R T   Y+K   EM  +F D  E      A+ NTV +A +      +    +PRF   E
Sbjct: 238  LRYTGTEYIKTEEEMNRLFVDHLEPDVVRQAIANTVAVAEKVEDYDILGHYQMPRFPIPE 297

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                       LR     GL  RL     +     ++Y +R+  EL ++ +M F  YFL+
Sbjct: 298  G----HTAVTYLREVTEQGLRERLE--LSSDASIPENYAERMAHELKIMEQMGFPTYFLV 351

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D+I++A++  IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D
Sbjct: 352  VWDYIRFAREQKIPVGPGRGSAAGSLVAYALGITNIDPVTNGLLFERFLNPERKSMPDID 411

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
             DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KLI
Sbjct: 412  TDFCIERRSEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLI 471

Query: 480  PNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            P     P  L+A+  +      FRE   +DP V R ++++ ++EG  +    HAAG+VI 
Sbjct: 472  PVVRGKPAKLKAMIGEESPTPEFREKYESDPVVKRWVDMAMRIEGTNKTFGVHAAGVVIA 531

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594
              PL +LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +    G 
Sbjct: 532  ADPLDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVSSGT 590

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            ++D   +P +D +T+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRPGP
Sbjct: 591  RLDPDKLPPEDADTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGP 650

Query: 655  IDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +D   I  + NRK+G+E I   H +++P+L ET G+++YQEQ+M+IAQ L+GYSL +AD+
Sbjct: 651  LDAGLIPKFINRKHGREAIDFAHTILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQADL 710

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK   EM K +  F+ GA++ G+ + ++  +F+ +  FA+Y FNKSH+ AY  +
Sbjct: 711  LRRAMGKKKVAEMQKHRGIFVKGAAERGVDEAVSDELFDQMVLFAEYCFNKSHSTAYGAV 770

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTA++K HYPV ++AA +T+     +K++++  +     I++MPP VN    DF    
Sbjct: 771  TYQTAYLKAHYPVAYMAALLTVNAGAADKVQRYIANCNAMGIEVMPPDVNASRTDFTPNG 830

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +RI + L+A++ +G    R ++ +  +D PF SL D C R+ S  LNRR LESL+  GAL
Sbjct: 831  DRILFGLSAVRNLGDGAIRQLIRSRDSDGPFRSLPDLCDRIPSSVLNRRGLESLIHCGAL 890

Query: 892  DCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--------ITLE 941
            D      +R QL+  LD +  +A    K+R +   N+F        +             
Sbjct: 891  DSMDPAANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAAPNDEDGASDLSLAPKAA 950

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
              +    + + + E+ +LGFY S HPL    P  R +   G            +    M+
Sbjct: 951  PVADYGPAEKLKLEKELLGFYLSDHPLKQLTPSARLLAPIGLGALEEQPDKAKVSAVTMI 1010

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +Q  TRKG  +  +   + +   EA  FP
Sbjct: 1011 TELRQVTTRKGDGMAILQLEDLSGSCEAVVFP 1042


>gi|325067134|ref|ZP_08125807.1| DNA polymerase III subunit alpha [Actinomyces oris K20]
 gi|326771682|ref|ZP_08230967.1| DNA polymerase III, alpha subunit [Actinomyces viscosus C505]
 gi|326637815|gb|EGE38716.1| DNA polymerase III, alpha subunit [Actinomyces viscosus C505]
          Length = 1197

 Score = 1031 bits (2667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1084 (33%), Positives = 577/1084 (53%), Gaps = 62/1084 (5%)

Query: 1    LTQYLEKSP--SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
            ++   E +P   FVHL VH+ YS+L+GA  + + + +     QPA+AITD   +F A EF
Sbjct: 4    MSSQEEAAPKDDFVHLHVHTDYSMLDGAGKIKDYVAEAKRLGQPALAITDHGYMFGAYEF 63

Query: 59   SQKACAAGIQPIIGCQLDIDMQ-DNLKMTN----------QGKTPFPTVPSIVLLVSTAE 107
               A AAGI+PIIG +  +         T              +   +   + LL    E
Sbjct: 64   YAAATAAGIKPIIGVEAYMTPGTSRFDKTRVFWGDESQRSDDVSARGSYTHMTLLSRNNE 123

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G   L+ + S   L  Q  ++ RI    L    + GLI  TG  S  +           A
Sbjct: 124  GLHNLMRMDSFASLEGQWGKAPRIDRELLSRYAS-GLIGSTGCPSSEVQTRLRLGQWDEA 182

Query: 168  EKRLLTFKKLFGDRL-YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
             +     + +FG    YV L  H    ++     ++++A     PL+ATN+S ++  ED 
Sbjct: 183  LRVAGELQDIFGKEFFYVELMDHGLEIEQRVTKDLLRIAKEIGAPLLATNDSHYVRPEDR 242

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSF- 283
               D ++ +   +V+S  DR +   D +YL+  +EM  +FS++P+A +NT+ +A +C   
Sbjct: 243  TIQDAMLCINSGSVLSDPDRFKFDGDTYYLRPGAEMRRLFSEMPQACDNTLLVAEQCDVH 302

Query: 284  --ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
               +   A  +P F   E +     +E+    +   G++ R        G   +D R++ 
Sbjct: 303  FRTVDEGASYMPAFPVPEGE----TDESWFIKECWRGMDRRF------NGDIPEDCRKQA 352

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            ++E++VI +M F GYFL+VAD+I WAK + I VGPGRGSGAGS+ AYA+ IT+++PLR  
Sbjct: 353  EYEISVITQMGFPGYFLVVADYINWAKAHGIRVGPGRGSGAGSMVAYAMGITELNPLRHG 412

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            L+FERFLNP+R+SMPD D+DF + RRDEVI YV+ KYG +R++Q++T+G ++AK +L+D 
Sbjct: 413  LIFERFLNPERISMPDIDVDFDERRRDEVIEYVREKYGADRISQVVTYGVIKAKQSLKDS 472

Query: 462  GRALQMPYSQVDRLCKLIPND-PAHPVSLQAIA--------DDSRFREARLADPSVDRLL 512
             R +  PY+  DRL K +P       +S++ I         +   FR+    DP   +++
Sbjct: 473  SRVMGYPYAVGDRLTKAMPPSVQGKDISIKGIFNPADERYGEAEEFRKLHAEDPDAQKIV 532

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            E+++ LEG+ R    HA  +++    L+ ++PM + ++    +TQF+    E  GL+K D
Sbjct: 533  ELAKGLEGMTRQWGVHACAVIMSSATLTDIIPMMQRLQDGAVITQFDYPTCEHLGLLKMD 592

Query: 573  FLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGL+ LT++  +L+ + A     +D+  +  DD  TY LL+   TLG+FQL+  GMR  
Sbjct: 593  FLGLRNLTVISDALENIVANGKPALDIDHVELDDRATYELLSRGETLGVFQLDGGGMRTL 652

Query: 632  LEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKET 685
            L  M+PD  EDI A+ +LYRPGP+  ++   Y  RKNG ++++ IHP +    DP+L  T
Sbjct: 653  LRLMKPDNFEDISAVGALYRPGPMGAESHTNYALRKNGLQEVIPIHPELKEALDPILGTT 712

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+I+YQEQVM+IA  L+G+S+ +AD LR+AMGKK  + + K    F +G  ++G SK  
Sbjct: 713  HGLIVYQEQVMKIATDLAGFSMGKADALRKAMGKKKMDILAKMFVEFEAGMVQSGFSKES 772

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               +++++  FA Y FNK+H+AAY V+SY TA++K HYP E++AA +T + DN +K+  +
Sbjct: 773  VKTLWDVVVPFAKYAFNKAHSAAYGVVSYWTAYLKAHYPTEYMAALLTSQKDNKDKLAVY 832

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDS 864
              + R   I ++PP VN     F      + + L+A++ VG      I+ A  D   F S
Sbjct: 833  LGECRHMGITVLPPDVNASRAQFSAVGEDVRFGLSAVRNVGINVVDAIVAAREDKGEFTS 892

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
             EDF  +V +   N+R ++SL+ AGA D  G++R  L    ++       V++N      
Sbjct: 893  FEDFLDKVPAVVCNKRTIDSLIKAGAFDSLGHTRRSLQACHEDFVDEVIGVKRNEAAGQF 952

Query: 925  NIFAHEKGTFSDK------------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
            ++FA   G   D               +      +   +   E+ +LG Y S HPL   +
Sbjct: 953  DLFASLMGGSDDADDSPFGNGPVFSSDVPNLPEWDKKDKLAYERDMLGLYVSDHPLMGLE 1012

Query: 973  PILRKMGIKGYEESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
             +L K+  K   E         G  + +A ++ S  +K T++G+        + A   E 
Sbjct: 1013 GLLGKLADKEISELHENDELPDGAMVTIAGLITSLTRKTTKQGNLWAIAQVEDLAGSIEV 1072

Query: 1030 NFFP 1033
             FFP
Sbjct: 1073 LFFP 1076


>gi|118594636|ref|ZP_01551983.1| DNA polymerase III, alpha subunit [Methylophilales bacterium
            HTCC2181]
 gi|118440414|gb|EAV47041.1| DNA polymerase III, alpha subunit [Methylophilales bacterium
            HTCC2181]
          Length = 1154

 Score = 1031 bits (2667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1042 (39%), Positives = 601/1042 (57%), Gaps = 40/1042 (3%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
               PSF+HL+ HS YS+ +G + +   + K      PA+ +TD +NLF A++F + A  +
Sbjct: 4    STQPSFIHLRCHSEYSITDGIVRIPEYIKKAVDTGMPALGLTDLSNLFGAVKFYKAATQS 63

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PI+GC + I+ + N                + L     +GY  L EL+S+ +L +Q 
Sbjct: 64   GIKPILGCDVWIENETNP----------DQPYRMALFCQNQQGYIHLSELLSKAFLTNQS 113

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            +    +  SW+      GLI L+G   G I      N    A++ L  ++ +FGDR Y+ 
Sbjct: 114  RGKAILKKSWVLNAHD-GLIALSGALKGNIGYLLDQNKIDEAQEELSAWRAIFGDRFYLE 172

Query: 186  LQRHRGY-----DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            +QR+              + + LA  +++PLVAT+   F+  +D+ AH+    +A   V+
Sbjct: 173  IQRYGSDARKKKQEEYIQKAIFLAVNNQVPLVATHPIQFMHTDDFRAHESKTCIADGYVL 232

Query: 241  SQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            + + RP   TP+ Y K   EM+ +F D+P A  NTV IA+RC+F  Q+    LP F    
Sbjct: 233  ADQRRPKDFTPEQYFKTPEEMLELFHDIPSATHNTVTIAKRCNFQFQLGEIFLPDFPIPN 292

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
               I    E+ L  +A  GL+ RL         +      Y  RL+FE+ VI  M ++GY
Sbjct: 293  GTKI----EDYLLIEAKKGLDQRLEDLYIDLKEREDQIPKYLDRLNFEVKVINEMGYAGY 348

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI W+K N+IPVGPGRGSGAGSV AY+L ITD+DPL ++LLFERFLNPDR+SMP
Sbjct: 349  FLIVADFINWSKSNHIPVGPGRGSGAGSVVAYSLGITDLDPLAYNLLFERFLNPDRVSMP 408

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFCQ+ RD VI YV+ KYG + V+QI TFG++ AKA LRDVGR L +PY+ VD + 
Sbjct: 409  DFDIDFCQEGRDRVIDYVKQKYGSDSVSQIATFGTMAAKAVLRDVGRVLDLPYNFVDTIA 468

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KL+P +    +   AI  + + ++    +  V  L +++ +LEGL R+ S HA G++I  
Sbjct: 469  KLVPLELGITLK-DAIEKEPQIKDRIKKEEEVKELFDLALRLEGLVRNVSMHAGGVLIAP 527

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
              +S   P+Y    ++  V+QF+   +E  GL+KFDFLGL+TLT++  +L+       + 
Sbjct: 528  TKISAFSPIYCQPGAEGIVSQFDKDDVEAVGLVKFDFLGLRTLTIVAMALENANHIRSQK 587

Query: 597  -----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                  L  IP DD  T+ LL    T  +FQLES GM+  L+  +PDC EDIIALV+LYR
Sbjct: 588  GEDPLQLESIPIDDKPTFDLLKASNTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYR 647

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+D I  +  RK+G++++   HP  + +LKET G+ +YQEQVMQIAQ+++GY+L  AD
Sbjct: 648  PGPMDLIPDFCKRKHGQQQVKYPHPATESILKETYGIAVYQEQVMQIAQVVAGYTLGGAD 707

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEMD Q+  F+ GA K+ +++  A ++F+LL KFA YGFNKSHAAAYA+
Sbjct: 708  LLRRAMGKKKIEEMDAQRATFVEGALKHELNQRQATDLFDLLEKFAGYGFNKSHAAAYAM 767

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KV 830
            I+YQT ++K HYP  F+AASM+ +M+N + +     D    NI ++PP++N     F  V
Sbjct: 768  IAYQTGYLKAHYPSAFIAASMSADMNNTDNVHMLFDDCVLNNITLLPPNINKSEYKFVPV 827

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                I Y L A+KG G +    I++   A+ PF SL DF +R+D +K+NR+  ESL+ +G
Sbjct: 828  DHESILYGLGAVKGTGLSAIDIIIDERNANGPFTSLFDFAARLDLRKVNRKAFESLIRSG 887

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A D    +R  LL S++     A+    N       +F   + T   ++ L +  +    
Sbjct: 888  AFDEIEPNRATLLASVNLAITKAEQA--NAHQGQNALFEEFETT---EVPLVEVGLWEER 942

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             +   E+  LGFYFSGHP   Y+ ++R+       E   T R     +A ++ +   + T
Sbjct: 943  KQLAEEKIALGFYFSGHPFKFYEKMIRQFVPNKLSEL--TPRDATYLIAGIISTIHMRMT 1000

Query: 1010 RKGSRIGWVTFSEPAKEYEANF 1031
             +G  I  VT  +     +   
Sbjct: 1001 SRGK-IAIVTLDDGVGRIDVVI 1021


>gi|163815364|ref|ZP_02206739.1| hypothetical protein COPEUT_01529 [Coprococcus eutactus ATCC 27759]
 gi|158449338|gb|EDP26333.1| hypothetical protein COPEUT_01529 [Coprococcus eutactus ATCC 27759]
          Length = 1195

 Score = 1031 bits (2666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1062 (34%), Positives = 574/1062 (54%), Gaps = 49/1062 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+GA  +  ++ +       ++AITD   ++  +EF +   A GI+PI
Sbjct: 3    FTHLHVHTGYSLLDGAAKIKELVHRAKELGYDSLAITDHGVMYGVIEFYEACMAEGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +          +          +VLL  T +GY  L ++V+R +         R
Sbjct: 63   LGCEVYVSPGSRFDR--EVGKGDDRYYHLVLLAETDQGYHNLSKIVTRGFTEG-FYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            + +  L++   EG+I L+   +G +      N  + A K  + ++ +F  +  ++ +Q H
Sbjct: 120  VDMEVLEKYH-EGIIALSACLAGEVATHLRKNDYEGARKAAVKYRNIFGENNYFLEMQDH 178

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D+    + V++L+    +P+V TN+S ++  ED+EAHDVL+ +  +  V  ++R R 
Sbjct: 179  GIPDQATVNAGVMRLSKELGIPMVVTNDSHYIYAEDWEAHDVLLCIQTNRKVQDENRMRY 238

Query: 249  TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +YLK++ EM  +F    EALENT +IA RC+  +      +PRF   +        
Sbjct: 239  DGGQYYLKSKEEMAELFPYALEALENTHKIAERCNVKIIFGEQKVPRFDVPDG----YTA 294

Query: 308  ENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            E  L      G+E +          +++G    D RQR+D+EL+VI  M F  YFLIV D
Sbjct: 295  EEYLEKLVYDGMERKYGIKYADTEDLSEGDKGYDVRQRIDYELSVIKSMGFVDYFLIVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI +AK N I VGPGRGS  GSV AY L IT I+P+++ LLFERFLNP+R+SMPD DIDF
Sbjct: 355  FIHFAKTNGIAVGPGRGSAVGSVVAYCLDITTIEPMQYDLLFERFLNPERVSMPDIDIDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C  RR EVI Y   KYG E V QII + ++ A+  +RDVGRA+ +PY+Q D L K IP +
Sbjct: 415  CYIRRQEVIDYCVKKYGEECVTQIIAYQTMGARNVIRDVGRAMDIPYAQCDALAKAIPAE 474

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                + + A+     F++       + +L++I++KLEGL R+A  HAAG+VIG   + + 
Sbjct: 475  KDMTIDI-ALKTSKDFQDMYRGSDEIRKLVDIAKKLEGLPRNAGMHAAGVVIGREAIEEY 533

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601
             P+         VTQF    +E  G++K DFLGL+T T++Q ++  + +     +D+  I
Sbjct: 534  APLSVGA-EGAVVTQFEKNTVEHLGMLKMDFLGLRTATVIQDTVKLIKENTGRDLDIDNI 592

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +DD     L+    T G+FQLES GM+  +  ++P  ++D+IA V+L+RPGP+  I  Y
Sbjct: 593  DYDDPNILGLMGQGKTEGMFQLESPGMKNFMMKLKPQSLDDVIAGVALFRPGPMQFIDDY 652

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K  +E +    P ++ +L+ T G IIYQEQVMQI   L+GY+L  +D++RRAM KK 
Sbjct: 653  IRGKENRELVRYDTPELEEILEPTYGCIIYQEQVMQIVMKLAGYTLGRSDLVRRAMAKKK 712

Query: 722  KEEMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
             EEM+K+++ F+ G  +        NGIS+ +A  IF+ + KFA+Y FNKSH+ AYAV++
Sbjct: 713  PEEMEKERKNFVYGNKELNVPGCVANGISEDVANKIFDEMMKFAEYAFNKSHSVAYAVLA 772

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
             QTA++K +YPVEF+AA ++  +DN  K+ K+    +Q N++I+PP +N     F + D 
Sbjct: 773  AQTAYLKYYYPVEFMAALISSVLDNNGKVAKYINVCKQMNVEILPPDINEGVAKFSISDG 832

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +I Y L+ IK VG      I+E    +  F  L DF +R+ SK  N++ +E+L+ +GA D
Sbjct: 833  KIRYGLSGIKSVGAAVVDRIVEERKKNGRFKDLHDFLTRMPSKDTNKKTVEALILSGAFD 892

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSV 950
              G +R Q+  +L  I +      K+R +   ++F      F+   ++   +      + 
Sbjct: 893  GMGANRKQMFMALPAISEETARERKSRESGQLSLFDIMGEDFAASTRVPYPEVEEYPDTE 952

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-------------------IR 991
            +   E+ VLG Y SGHPL  Y  +L+K       +                         
Sbjct: 953  KLSLEKSVLGVYISGHPLGKYVDLLQKNCTAQSLDFAGDSEDDAELDDAGTDEKDRKIQD 1012

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            G    +  ++     K TR    + +VT  +   + +   FP
Sbjct: 1013 GAVYVVGGIITDVSVKLTRNNQNMAYVTLEDLVGQIDIVVFP 1054


>gi|153006392|ref|YP_001380717.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. Fw109-5]
 gi|152029965|gb|ABS27733.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 1217

 Score = 1031 bits (2666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1090 (37%), Positives = 618/1090 (56%), Gaps = 77/1090 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL +H+ YSLL+GA+ + ++L  + A     +A+TD  NLF A++F +KA  AG++
Sbjct: 2    PDFVHLHLHTLYSLLDGAIRIKDLLKTVQAKGMKTVAVTDHGNLFGAVDFYKKAKDAGVK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G +  +          +          ++LL   AEG+  L  L S+ +        
Sbjct: 62   PIMGMEAYVAGD-----KGRHDRSERVGRHLILLAKNAEGWANLRFLSSKAFTEG-FYYD 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
             RI    L++  ++GL+ LT   +G + R         A +    ++ +F     ++ +Q
Sbjct: 116  PRIDKQLLRD-HSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLEVQ 174

Query: 188  RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   ++    +++ QL     +PLVAT ++ ++S +D +AH+VLM +A +       R 
Sbjct: 175  SNGMREQLDVNAKLAQLGRDEGIPLVATADAHYVSRQDAKAHEVLMCIASNKTFQDPKRL 234

Query: 247  RVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R   D    ++  +MV+   +  EA++NT+ IA  C+  LQ+    LPRF   +      
Sbjct: 235  RHETDGLFIQSPDDMVAALPEYREAIDNTIRIAEMCNVELQLGKSFLPRFQLPDG----V 290

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             EE  +   A  GL+ R  +      +    YRQRL+ EL VI +M FSGYFLIV DFI 
Sbjct: 291  SEEEWIEKLAKDGLDARFREIDGKYPHDRDAYRQRLEMELGVIKKMGFSGYFLIVQDFIN 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            W K++ IPVGPGRGSGAGS+ A++L ITD+DPLR++LLFERFLNP+R+SMPDFD+DFCQ+
Sbjct: 351  WGKQHQIPVGPGRGSGAGSIVAWSLRITDLDPLRWNLLFERFLNPERVSMPDFDVDFCQN 410

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PA 484
            RRDEVI YV+ KYG + V QIITFGSL+A++ +RDV R + +P+++ D++ KL+P+    
Sbjct: 411  RRDEVIDYVREKYGKDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDKIAKLVPDPVQG 470

Query: 485  HPVSLQAI-------ADDSRFREARLADPSV---------------DRLLEISQKLEGLY 522
                L+ +         + R  E       +                 LL+I+  LEGL 
Sbjct: 471  KTPPLKELVFGSDKMPAEPRLEELYKKPTVISQWVDEKGVQHTVTTKDLLDIAMSLEGLN 530

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R A  HAAG+VI D+PL   VP Y+D +S++ V+QF  + +E AGL+KFDFLGLKTLT++
Sbjct: 531  RQAGLHAAGVVIADKPLWDYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKTLTVI 590

Query: 583  QKSLDFLAQRGVKV---DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
              +L  + Q   ++     + IP DD + Y L++   T G+FQ+ESSG  + +  M+P  
Sbjct: 591  DDALRMVKQNHPEMKDFTAADIPIDDPKVYELISRGDTAGVFQMESSGFTEMVIKMKPSR 650

Query: 640  IEDIIALVSLYRPGPID--------NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
             ED+IA  +LYRPGP+D         + VY +RK+G+EK+V  HP ++P+L+ T GVI+Y
Sbjct: 651  FEDVIAAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVVYDHPKLEPVLEPTYGVIVY 710

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQI+Q+L+GYSL +AD+LRRAMGKK  E M K++  F++GA K+G+ + +A  IF+
Sbjct: 711  QEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVKSGVDEKVAGGIFD 770

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            L+ KFA YGFNKSH+AAY +++ QTAW+K HYPVEF+AA ++ E  N +K+     +AR 
Sbjct: 771  LMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHISEARA 830

Query: 812  FNIQIMPPSVNTPCVDF-----------------KVGDNRIYYSLAAIKGVGTTTARHIM 854
              I+++PP VN    DF                      RI + L A++GVG +  + I+
Sbjct: 831  DGIEVLPPDVNESDKDFGAFGPAESARPSTGPGRAANKGRIRFGLGAVRGVGDSAVQAIL 890

Query: 855  EASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            EA A+  PF +L D  SRVDSKK+N++V+E+LV +GALD  G  R QL   +D+      
Sbjct: 891  EARAEGGPFKTLYDLASRVDSKKINKKVVEALVKSGALDFEGVPRWQLFAGIDSAFAAGA 950

Query: 914  WVEKNRTNKHENIFAH-EKGTFSDKITLEK---------FSVENSSVRFENEQRVLGFYF 963
              + +R +   ++F          K    +                VR   E+  LGFY 
Sbjct: 951  SAQADRASGQASLFGALPAAQVEQKPRYPRPGDVVGELTVEEWPERVRLAFEKEALGFYL 1010

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSE 1022
            +GHPL  Y+  +R+              G+ + +  +V + +++  + KG+R G++T  +
Sbjct: 1011 TGHPLQGYEKEVRRYASTTCAAVANKRHGDKVSVVGVVAAVRERMNKEKGTRFGFLTLED 1070

Query: 1023 PAKEYEANFF 1032
                 E   +
Sbjct: 1071 LTGTVEVVCW 1080


>gi|330817862|ref|YP_004361567.1| DNA polymerase III, alpha subunit [Burkholderia gladioli BSR3]
 gi|327370255|gb|AEA61611.1| DNA polymerase III, alpha subunit [Burkholderia gladioli BSR3]
          Length = 1179

 Score = 1031 bits (2666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/1043 (38%), Positives = 602/1043 (57%), Gaps = 38/1043 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++++   AAD Q A+A+TD  N F  + F Q+A   G
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDLVKAAAADGQGALALTDLGNAFGLVRFYQEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   VKPIAGCDVWITNHDD----------RDKPSRLLLLVRDKAGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +   WL+    +GL+ L+G   G I  A    +++ A +    + ++F    Y+ L
Sbjct: 112  GRAEVDAQWLESELGQGLLALSGAQQGDIGIALAAGNAEAARRHAQRWARVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          +  +LA   +LP+VAT+   F+ +ED+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGGEAYVQEAAKLAAELQLPVVATHPLQFMGDEDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T +   + ++EM  +F+D+P A++NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 232  QKRFTIEQRFRTQAEMAELFADIPSAVQNTVEIAKRCNLKLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RL Q       +      Y QRL+FE N I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSQEGLEKRLVQLFPDEAERDAQRATYYQRLEFECNTIKKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  F+ +         
Sbjct: 528  DFCPLYAQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERFIRRLDPAKADWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     ++++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCELNGLKVLPPDINQSEYRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                  Y L A+KG G      I+ A  +   F  L DFC R+D + +NRR +E+L+ AG
Sbjct: 828  RSKTIRYGLGAVKGSGQNAIEEILRARKEGGAFKDLFDFCERIDRRLVNRRTVEALIRAG 887

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A D    +R QL+ S+    + A   E N       +F            L      +  
Sbjct: 888  AFDVLTPNRAQLIASVPLAMEAADQAEANAM--QAGLF-DMGAESPHAHALVDEPAWDEK 944

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             R + E+  LGFY SGH  D Y+  +R+       E      G +  +A ++ S + + T
Sbjct: 945  RRLQEEKGALGFYLSGHLFDAYREEVRRFARMKLGEL---KEGRDKLVAGVIASLRTQMT 1001

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
            ++G  +      +   + E   F
Sbjct: 1002 QRGK-MIIALLDDGTGQCEITVF 1023


>gi|291528373|emb|CBK93959.1| DNA polymerase III catalytic subunit, DnaE type [Eubacterium rectale
            M104/1]
          Length = 1166

 Score = 1031 bits (2665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/1048 (33%), Positives = 553/1048 (52%), Gaps = 33/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL  H+ YSLL+G+  +   + ++      + AITD  N++  +EF + A A  I P
Sbjct: 2    SFCHLHTHTEYSLLDGSNKIKEYVKRVKELGMNSAAITDHGNMYGVVEFYKTAKANDINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ +          +          ++LL     GY  L+++VS  +         
Sbjct: 62   VIGCEVYVAPNSRFDR--ETSHGDDRYYHLILLAENNTGYANLMKIVSIGFTEG-YYYRP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L+     GLI L+   +G I R         A++    ++  F  D  ++ LQ 
Sbjct: 119  RVDFETLERYHD-GLICLSACLAGEIPRYIVRGFYDEAKEIARKYQDCFGKDNFFLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+     Q+++++   E+ LV TN+  +  E D EAHDVL+ +     VS +DR R
Sbjct: 178  HGIDDQKLVNQQLLRMSKELEIGLVCTNDVHYTYESDAEAHDVLLCIQTGKKVSDEDRMR 237

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +  K+  +M ++F    EA+ENT +IA RC+  L+     +P++   E  D    
Sbjct: 238  YDGGQFFVKSEEQMRALFPYATEAIENTQKIADRCNVTLEFGNYKIPKYEVPEGYD---S 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E  L      G   +            +     +D+EL +I  M F  Y LIV D+I W
Sbjct: 295  AEAFLTELCEKGFREKYIGCGEYSVDELKKIHADMDYELGIIKTMGFIEYILIVWDYINW 354

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             + ++  VGPGRGS AGS   Y   ITDIDP++++LLFERFLNP+R+SMPD D+DF    
Sbjct: 355  CRTHDCWVGPGRGSAAGSRVCYCTGITDIDPVKYNLLFERFLNPERVSMPDIDVDFEYAE 414

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R   I YVQ KYGH+ V QI+TFG++ A+  ++ VG+AL  PY++ DRL K++P +    
Sbjct: 415  RYRAIEYVQQKYGHDSVTQIVTFGTMAARGVIKSVGKALDFPYAETDRLAKMVPQELNIT 474

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +  F+    +D  V  +++++++LEGL  H S HAAG+VI     S  VP+ 
Sbjct: 475  ID-KALQMNPEFKGIYDSDARVHEMIDMAKRLEGLPNHTSVHAAGVVIYPGVASDYVPLG 533

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            R      P  ++NM  +E+ GL+K DFLGL+TLT+L+ S+  +   RG+ VD+  I F+D
Sbjct: 534  RA-NDGSPTAEYNMVQLEELGLLKMDFLGLRTLTVLKDSVKNIKASRGIDVDIDHIDFND 592

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T   + T  T G+FQLES+GM+  ++ + P   EDI+A +SLYRPGP+D I  Y   K
Sbjct: 593  KGTLDFIGTGKTEGVFQLESAGMQSFMKELSPQSFEDIVAGISLYRPGPMDFIPNYIKGK 652

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  ++I  + P ++ +L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM KK +  +
Sbjct: 653  NNPKEISYVTPELESILEPTYGCIVYQEQVMQIVQKLAGYTMGQADNIRRAMSKKKQYVI 712

Query: 726  DKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            D +++ F+ G  +        NGI +  A +I++ +  FA Y FNKSHAAAYA IS QTA
Sbjct: 713  DAERQSFVYGDKERGIKGCVANGIDEKAANSIYDSMVDFAKYAFNKSHAAAYAKISVQTA 772

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K +YPVEF+AA MT  +DN  K  ++    R   I+++PP +N    +F    + + Y
Sbjct: 773  WLKNYYPVEFMAALMTSVIDNSAKAAQYLYSCRDMGIKVLPPDINCGQGEFTAEGDHVRY 832

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKK-LNRRVLESLVFAGALDCFG 895
             + AIK +G      I+E       + +L DF  R   K+ +N+R +E+L+ AGA D   
Sbjct: 833  GMYAIKSLGRPVIDQIIEERESGGRYRTLSDFIERTCQKELINKRAIENLIKAGACDSLD 892

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFE 953
             +R Q+     +I    Q  +K+      ++F    ++   S ++        ++     
Sbjct: 893  GTRKQMAMVYASIVDRVQHDKKSTMAGQMSLFDLVSDEDRQSFELKYPNVGEYDAEEALA 952

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE--------SVATIRGNNIRLAAMVVSKQ 1005
             E+ VLG Y SGHPL+ Y   L+K       +        SV      ++ +  M+ +K 
Sbjct: 953  YEKEVLGIYLSGHPLEKYAAALKKNITANAIDFVLEEESGSVKIKDNAHVVIGGMIATKT 1012

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K T+    + ++T  +     E   FP
Sbjct: 1013 IKFTKYNQAMAFITIEDLTGTVEVIIFP 1040


>gi|302380218|ref|ZP_07268690.1| DNA polymerase III, alpha subunit [Finegoldia magna ACS-171-V-Col3]
 gi|302312001|gb|EFK94010.1| DNA polymerase III, alpha subunit [Finegoldia magna ACS-171-V-Col3]
          Length = 1161

 Score = 1031 bits (2665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1050 (35%), Positives = 589/1050 (56%), Gaps = 44/1050 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G   +  +LDK+   +  AIAITD  ++F  ++F ++     I+P
Sbjct: 4    TFTHLHVHTEYSLLDGFSPIEKLLDKVEELKMKAIAITDHGSMFGTVKFYKECKKRNIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++    +D+     + K        +VLL    +GY  L+++VS  Y+        
Sbjct: 64   IIGCEIYTTNKDHKIKNPENK----FYNHLVLLAKNQQGYSNLMKIVSLGYVEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+  + L++  +EG+I L+    G +  +        A+      K ++G+  Y+ LQ H
Sbjct: 119  RVDKNTLRKY-SEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNH 177

Query: 190  RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +     + + ++A   ++ LV TN+  ++ +EDY+ H++L+ +     + + ++   
Sbjct: 178  SSREDMVVMENIPKIAKELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEDNKMSY 237

Query: 249  TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             P + +L++  +M  +F D PEA+ENT +IA  C+  L+     LP F   E        
Sbjct: 238  IPGEFFLRSEEQMKDLFKDYPEAIENTKKIAEMCNVELEFGHLHLPYFAIPEGF----TN 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + L+     GLE R A          Q+ ++R ++EL+VI +M +  YFLIV DFI++A
Sbjct: 294  SSYLKKLVFDGLEKRFAND-----ERLQEAKERCEYELSVIEKMGYVDYFLIVWDFIRFA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K  +IPVGPGRGS AGS+ +Y L ITDI+PL + L+FERFLNP+R+SMPD DIDFC +RR
Sbjct: 349  KSQDIPVGPGRGSAAGSIISYCLEITDINPLDYDLIFERFLNPERVSMPDIDIDFCYERR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI YV NKYG ++VAQI+TFG++ A+ A+RDVGR L M +  VD   K +PN     +
Sbjct: 409  EEVIDYVVNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLLNINI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +++     FR+A   +  V +L+++++++EG+ RH STHAAG+VI   P+ + VP+  
Sbjct: 469  D-KSLEISPEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYVPL-- 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
             +  D  +TQFNM  +E+ GL+K DFLGL+TLT++   + ++ + + + V+   +  +D 
Sbjct: 526  AINKDAVITQFNMTELEELGLLKMDFLGLRTLTVISDCIKYIKKNKNIDVNFEDMNENDP 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +   + T   TLGIFQ ES GMR  L+ ++P   +D+IA  +L+RPGP++ I  Y + K+
Sbjct: 586  KVLSMFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPMNEIPTYIHNKH 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +E +  + PL++ +LK T G I+YQEQVMQI Q ++G+SL EAD LRRAM KK  + M+
Sbjct: 646  NEEDVEYLSPLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKKMKVME 705

Query: 727  KQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              ++ F            I GA + G+ + +A  I++L+  FA Y FNKSH+AAY++++ 
Sbjct: 706  DGRKEFIFGKEDENGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAYSLVAM 765

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +TAW+K +YPVEFLAA ++  M N  +I  + ++AR+ +I+I PP +N     F V DN 
Sbjct: 766  RTAWLKYYYPVEFLAALISSVMGNTSQISLYIEEARRLDIEISPPDINYSLDKFDVKDNS 825

Query: 835  IYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890
            I Y L AIK VGT      I+  + +  F S  DF  R+   D   +N+R +ESL+ AGA
Sbjct: 826  IIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESLIKAGA 885

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSS 949
                G +R  L+    +I    Q   KN      N+F   E    +D+    +    + S
Sbjct: 886  FSSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNEENDRDDFTRREEFDKS 945

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------RGNNIRLAAMVVS 1003
                 E+ VLG Y S HPL  Y  I+ +       +            G  +++  ++ S
Sbjct: 946  ELLRMEKEVLGIYLSDHPLRAYSSIIDQYSNFSTGDLEDDAYNEKNFDGKRVKVVGIIES 1005

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +K T+    + +V F +     E   FP
Sbjct: 1006 INKKFTKNQKIMEFVKFEDLYGTMELIVFP 1035


>gi|291525519|emb|CBK91106.1| DNA polymerase III catalytic subunit, DnaE type [Eubacterium rectale
            DSM 17629]
          Length = 1166

 Score = 1031 bits (2665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/1048 (33%), Positives = 554/1048 (52%), Gaps = 33/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL  H+ YSLL+G+  +   + ++      + AITD  N++  +EF + A A  I P
Sbjct: 2    SFCHLHTHTEYSLLDGSNKIKEYVKRVKELGMNSAAITDHGNMYGVVEFYKTAKANDINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ +          +          ++LL     GY  L+++VS  +         
Sbjct: 62   VIGCEVYVAPNSRFDR--ETSHGDDRYYHLILLAENNTGYANLMKIVSIGFTEG-YYYRP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L+    EGLI L+   +G I R         A++    ++  F  D  ++ LQ 
Sbjct: 119  RVDFETLERYH-EGLICLSACLAGEIPRYIVRGFYDEAKEIARKYQDCFGKDNFFLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+     Q+++++   E+ LV TN+  +  E D EAHDVL+ +     VS +DR R
Sbjct: 178  HGIDDQKLVNQQLLRMSKELEIGLVCTNDVHYTYESDAEAHDVLLCIQTGKKVSDEDRMR 237

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +  K+  +M ++F    EA+ENT +IA RC+  L+     +P++   E  D    
Sbjct: 238  YDGGQFFVKSEEQMRALFPYATEAIENTQKIADRCNVTLEFGNYKIPKYEVPEGYD---S 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E  L      G   +            +     +D+EL +I  M F  Y LIV D+I W
Sbjct: 295  AEAFLTELCEKGFREKYIGCGEYSDEELKKIHADMDYELGIIKTMGFIEYILIVWDYINW 354

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             + ++  VGPGRGS AGS   Y   ITDIDP++++LLFERFLNP+R+SMPD D+DF    
Sbjct: 355  CRTHDCWVGPGRGSAAGSRVCYCTGITDIDPVKYNLLFERFLNPERVSMPDIDVDFEYAE 414

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R   I YVQ KYGH+ V QI+TFG++ A+  ++ VG+AL  PY++ DRL K++P +    
Sbjct: 415  RYRAIEYVQQKYGHDSVTQIVTFGTMAARGVIKSVGKALDFPYAETDRLAKMVPQELNIT 474

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +  F+    +D  V  +++++++LEGL  H S HAAG+VI     S  VP+ 
Sbjct: 475  ID-KALQMNPEFKGIYDSDARVHEMIDMAKRLEGLPNHTSVHAAGVVIYPGVASDYVPLG 533

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            R      P  ++NM  +E+ GL+K DFLGL+TLT+L+ S+  +   RG+ VD+  I F+D
Sbjct: 534  RA-NDGSPTAEYNMVQLEELGLLKMDFLGLRTLTVLKDSVKNIKASRGIDVDIDHIDFND 592

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T   + T  T G+FQLES+GM+  ++ + P   EDI+A +SLYRPGP+D I  Y   K
Sbjct: 593  KGTLDFIGTGKTEGVFQLESAGMQSFMKELSPQSFEDIVAGISLYRPGPMDFIPNYIKGK 652

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  ++I  + P ++ +L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM KK +  +
Sbjct: 653  NNPKEISYVTPELESILEPTYGCIVYQEQVMQIVQKLAGYTMGQADNIRRAMSKKKQYVI 712

Query: 726  DKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            D +++ F+ G  +        NGI +  A +I++ +  FA Y FNKSHAAAYA IS QTA
Sbjct: 713  DAERQSFVYGDKERGIKGCVANGIDEKAANSIYDSMVDFAKYAFNKSHAAAYAKISVQTA 772

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K +YPVEF+AA MT  +DN  K  ++    R   I+++PP +N    +F    + + Y
Sbjct: 773  WLKNYYPVEFMAALMTSVIDNSAKAAQYLYSCRDMGIKVLPPDINCGQGEFTAEGDHVRY 832

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKK-LNRRVLESLVFAGALDCFG 895
             + AIK +G      I+E       + +L DF  R   K+ +N+R +E+L+ AGA D   
Sbjct: 833  GMYAIKSLGRPVIDQIIEERESGGRYRTLSDFIERTCQKELINKRAIENLIKAGACDSLD 892

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFE 953
             +R Q+     +I    Q  +K+      ++F    ++   S ++        ++     
Sbjct: 893  GTRKQMAMVYASIVDRVQHDKKSTMAGQMSLFDLVSDEDRQSFELKYPNVGEYDAEEALA 952

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE--------SVATIRGNNIRLAAMVVSKQ 1005
             E+ VLG Y SGHPL+ Y   L+K       +        +V      ++ +  M+ +K 
Sbjct: 953  YEKEVLGIYLSGHPLEKYAAALKKNITANAIDFVLEEESGAVKIEDNAHVVIGGMIATKT 1012

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K T+    + ++T  +     E   FP
Sbjct: 1013 IKFTKYNQAMAFITIEDLTGTVEVIIFP 1040


>gi|325982112|ref|YP_004294514.1| DNA polymerase III, alpha subunit [Nitrosomonas sp. AL212]
 gi|325531631|gb|ADZ26352.1| DNA polymerase III, alpha subunit [Nitrosomonas sp. AL212]
          Length = 1167

 Score = 1031 bits (2665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1045 (40%), Positives = 618/1045 (59%), Gaps = 38/1045 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P+F+HL++HS YS+L+  + +++++ K  ADQ PA+A+TD  NLF  ++F Q A  
Sbjct: 1    MPIKPAFIHLRMHSEYSILDSTIRIHDVVKKAVADQMPALALTDLANLFGLVKFYQAAYK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI+GC + I  + +                +++L  T  GY  L  L+SR Y  +Q
Sbjct: 61   NGIKPILGCDIWIANESDRSK----------PIRLLVLCQTHAGYLLLSRLLSRAYRENQ 110

Query: 125  GKQSVRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             +    I  SWLQ  + GTEGLI L+G   G I  +   N+   AE ++  +  LF DR 
Sbjct: 111  FQNRAEIKESWLQPDDWGTEGLIALSGARLGDIGLSLLQNNILQAEIQVQKWATLFPDRF 170

Query: 183  YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +QR     +       + LA    LP+VAT    FL+ EDY+AH+  + +A   ++ 
Sbjct: 171  YLEIQRDGHANEAMLVQHSLALAKKFNLPVVATQAVQFLNVEDYQAHEARVCIAEGYILE 230

Query: 242  QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K R    T   Y K ++EM  +F+D+P AL NT+EIA+RC+ IL++    LP F     
Sbjct: 231  DKRRQKNFTQQQYFKTQTEMTQLFADIPAALTNTIEIAKRCNLILELGVNRLPLFPTPNN 290

Query: 301  DDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            + +    +  LR++A  GL  R   L   A  +      Y+ RL+FE+N I +M F+GYF
Sbjct: 291  ESL----DQYLRSQAELGLIKRMTSLFPDAEMRNDRITQYQSRLEFEVNTIIQMGFAGYF 346

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK NN+PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPD
Sbjct: 347  LIVADFINWAKHNNVPVGPGRGSGAGSLVAYSLGITDLDPLRYDLLFERFLNPERISMPD 406

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQDRR+ VI YV+ +YG  +V+QI TFG++ AKA +RD+GR + +PY+ VD+L K
Sbjct: 407  FDIDFCQDRRELVIEYVKQRYGIGKVSQIATFGTMAAKAVIRDIGRVMDLPYNFVDQLAK 466

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            LIP +    +  +A   + +  + R  +  V  LLE+++ LEG+ R+   HA G++I   
Sbjct: 467  LIPFEIGMTLK-KARQLEPQLNQ-RAEEEDVRNLLELAESLEGITRNVGMHAGGVLIASS 524

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             ++   P+Y     D  V+Q +   +EK GL+KFDFLGL+TLT+L +++ ++ Q    +D
Sbjct: 525  EITDFCPIYCTESGDSVVSQLDKDDVEKIGLVKFDFLGLRTLTILDRAVGYIRQLHPNID 584

Query: 598  --------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                    L  +P DD  TY L+     +GIFQ ES GM   L+  +PD  EDIIALV+L
Sbjct: 585  SPESRLFSLETLPLDDDATYALMRKGNAVGIFQFESRGMIDLLQKAKPDHFEDIIALVAL 644

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP+D I  + +RK+G+++I  + P ++P+L  T G++IYQEQVMQIAQ++ GYSL  
Sbjct: 645  YRPGPMDLIPEFIDRKHGRKQIEYLDPRLEPILGPTYGIMIYQEQVMQIAQVIGGYSLGS 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM +Q++ F+SGA  NG+S+  A  +F L+ KFA YGFNKSHAAAY
Sbjct: 705  ADLLRRAMGKKKVEEMAQQRDIFVSGAINNGLSEDKATELFGLMEKFAGYGFNKSHAAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF- 828
            A+I++QTA++K HYP EF+AA ++ +MD+ +K+  F +D+    I I+PP +N     F 
Sbjct: 765  ALIAFQTAYLKAHYPAEFMAACLSADMDDTDKVHIFVEDSIANGIIILPPDINLSDYRFI 824

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V    I + L A+KG G +    I+       PF  L DFC+RVD +  NRRV+ESL+ 
Sbjct: 825  PVDSKNIRFGLGAVKGTGESAVNSIIAVRRQTGPFTDLFDFCNRVDRRIANRRVMESLIR 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
             GA D    +R  L+ S+    + A+    ++++   N+F         +  L +    +
Sbjct: 885  VGAFDIINPNRASLMASVGLAIESAEQT--SQSSNQINLFGETSSDAQMQPQLIQAESWH 942

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
               +   E+  LG+YFSGHP D Y   L+       +            LA ++ S + +
Sbjct: 943  DREKLHQEKIGLGYYFSGHPFDTYASELKHFICTRLDRLNPQREPQ--LLAGIIHSIRTQ 1000

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             TR+G  +G +   +     E   F
Sbjct: 1001 MTRRGK-MGVINLDDGKARIEVVIF 1024


>gi|268679272|ref|YP_003303703.1| DNA polymerase III subunit alpha [Sulfurospirillum deleyianum DSM
            6946]
 gi|268617303|gb|ACZ11668.1| DNA polymerase III, alpha subunit [Sulfurospirillum deleyianum DSM
            6946]
          Length = 1182

 Score = 1030 bits (2664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1062 (36%), Positives = 614/1062 (57%), Gaps = 50/1062 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            + HL +H+ YSLL+GA  +  +  K+ A    ++AITD  N+F AL+F +     GI+PI
Sbjct: 6    YTHLHLHTEYSLLDGANKIGKLAKKLKAQGVGSVAITDHGNMFGALDFYKTMRKEGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  I  QD++     G         + L      GY+ L+ L S  Y+        R
Sbjct: 66   IGIEAYIHNQDDI-----GDKTTKQRFHLCLFAKNEIGYKNLMYLSSMSYIKG-FYYYPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTFKKLFGD 180
            I    L+E  +EGLI  +    G ++     N+           + A++  L +K +FGD
Sbjct: 120  INKQLLKE-HSEGLICSSACLQGEVNWHLNLNNKRNVQFGAKGYERAKEVALEYKAIFGD 178

Query: 181  RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ + RH   D+ + +  ++++A    + ++ATN++ +L  +D EAH+  M +A +  
Sbjct: 179  DFYLEIMRHGINDQMFIDDNILRIAKETGIKVIATNDTHYLEPDDAEAHEAFMCIAMNKE 238

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +R R +  + ++K+  ++  +F D+PE LENT EI  +C+  +++  P  P+F   
Sbjct: 239  FDDPNRLRHSVHEFFVKSPEQIADLFVDIPEVLENTQEIVDKCNLEIKLGDPTPPKFKFT 298

Query: 299  ECDDIQK-----EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            +    ++      +++   +K   GL+ RL     +K    ++Y+ RL+ E++VI  MKF
Sbjct: 299  KEYAAREGLSFESDDDFFAHKCREGLKERLKYVDASKH---EEYKARLEREISVICTMKF 355

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GY LIV DFI+ AK   +PVGPGRGS AGS+ AY+L ITD+DP+ ++LLFERFLNP+R+
Sbjct: 356  PGYMLIVWDFIREAKSRGVPVGPGRGSAAGSLVAYSLFITDLDPMPYNLLFERFLNPERI 415

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD D+DFCQ RR E+I YV  KYG   VAQ+ITFG L AK  +RDV R L +PY++ D
Sbjct: 416  SMPDIDVDFCQSRRGEIIDYVVEKYGRYNVAQVITFGKLLAKGVIRDVARVLAIPYAEAD 475

Query: 474  RLCKLIPNDPAHPV-----------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             + KLIP++    +              A   + + RE    DP + R+ + +  LEGL 
Sbjct: 476  AMAKLIPDELGITLNGIGVEGEEGFKAGAYQKEPKLRELIERDPRMQRVWKFALALEGLN 535

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R++  HAAG+VI D  L    P+Y+    D  VTQ+++ ++E   LIKFDFLGLKTLT++
Sbjct: 536  RNSGMHAAGVVISDEELWHKTPLYQPSGEDHLVTQYSLNFLEDVDLIKFDFLGLKTLTVI 595

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              +L  +  R    +D + +  +D + Y L+ +  T+G+FQ+ESSGM+   E ++P+  E
Sbjct: 596  DNALKLIKARYNKTIDFNALDLNDPKVYELIQSGDTIGLFQIESSGMQSLNERLKPNTFE 655

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQV 695
            D+IA+++LYRPGP+++ +   + +RK+G++++          + P+L+ T GVI+YQEQV
Sbjct: 656  DLIAVLALYRPGPMESGMLDDFIDRKHGRKEVTYFFDEFTKPLQPILEPTYGVIVYQEQV 715

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQI Q + G+SL E+D++RRAMGKK  + M ++ E F  GA K G+ +  A+ +F L+ K
Sbjct: 716  MQIVQSIGGFSLGESDLIRRAMGKKKIDYMKQKAEEFADGAVKQGLDRAHAIELFGLIEK 775

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA YGFNKSH+AAYA+I++QTA++K +YP EF+AA +T E DN +KI K+  + ++  I+
Sbjct: 776  FAGYGFNKSHSAAYALITFQTAYLKCYYPQEFMAALLTSEQDNTDKIVKYIDEVKRLGIK 835

Query: 816  IMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
            ++PPS+    ++F       G   I + + AIKGVG      I+EA AD PF  + DF S
Sbjct: 836  LLPPSIQHSLIEFSAITDSDGCEAILFGMGAIKGVGNAAISKILEARADAPFSDMSDFIS 895

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            R+D  K+N++VLESL+ +G+ D FGYSR  LL+S+D I + +    + +     ++F   
Sbjct: 896  RIDGSKVNKKVLESLIKSGSFDGFGYSRRALLESIDTIIEASGECSRAKKMAEYSLFGDS 955

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
            +   S  + +E  S  +S    E E+  +GFY SGHPLD ++  + +M      E     
Sbjct: 956  EEMTSVAVKIEPISEFDSKRMLELEKETIGFYISGHPLDAFRAQIDEMNYMLSSEKDQIE 1015

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             G+       V S  +K ++KG++ G V+  +     E   F
Sbjct: 1016 DGSKALFIGKVESITEKMSKKGNKFGVVSLMDFHGSMELTVF 1057


>gi|320537716|ref|ZP_08037642.1| putative DNA polymerase III DnaE [Treponema phagedenis F0421]
 gi|320145453|gb|EFW37143.1| putative DNA polymerase III DnaE [Treponema phagedenis F0421]
          Length = 1139

 Score = 1030 bits (2664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1029 (36%), Positives = 567/1029 (55%), Gaps = 23/1029 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS YSLL+GA S+  ++       QPA+A+TD  N+F  L F ++     I+P
Sbjct: 2    DFVHLHVHSDYSLLDGASSIQKLVSTAKKLGQPALALTDHGNMFGVLRFQEECKKQEIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC+L +  +       Q          ++L+     GY+ L+ L S+ Y         
Sbjct: 62   LIGCELYVAAKSRFDRNKQ--INGRNYYHLILIAKNEIGYRNLMVLSSKAYTEGM-YYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    LQ   +EGLI L+   +G +         + AE  +  +  +FGD  ++ +Q H
Sbjct: 119  RIDDELLQ-AHSEGLICLSACLAGQLPYLLLNGRKEEAEAHVRKYLDIFGDNYFIEVQNH 177

Query: 190  RGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ + +  ++++A    +P+V TN+  +  ++D  A D+L+ +    V +  +R + 
Sbjct: 178  GLAEQKKVTPLLIEMARKLGIPMVLTNDVHYAEQKDSVAQDILLCIGMKKVRTDTNRMKF 237

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  YLK+  EM  +F + PE + NT+ IA  C+  +    P+LP +   E       +
Sbjct: 238  ETDQFYLKSAEEMAKLFPEYPEMMSNTLRIADMCNVEIPQPGPLLPVYKIPEE---FASK 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  +R+    GL+ R             + ++R ++EL++I +M F GYFLIV DFI WA
Sbjct: 295  DLYIRHLVAEGLKTRY-------EVITDEIKKRAEYELDIIIKMDFVGYFLIVWDFINWA 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K ++IPVGPGRGSGAGS+ AYA+ ITDIDPLR+ LLFERFLNP+R+SMPDFD+DFC +RR
Sbjct: 348  KNHDIPVGPGRGSGAGSIVAYAMRITDIDPLRYKLLFERFLNPERISMPDFDVDFCFERR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV+ KYG E V QIITFG+L+ KAA++DVGR L +P + V+ + KL+P DP   +
Sbjct: 408  QEVIEYVRQKYGDESVGQIITFGTLKPKAAIKDVGRVLNIPLADVNMITKLMPEDPK--L 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            + +         + +   P    L +I++ LE   R+ S HAAGIVIG   L+  VP+Y+
Sbjct: 466  TFEKALTIPELVQIKET-PEYTELFQIAEALEDSNRNTSLHAAGIVIGKTKLTDYVPLYK 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---VKVDLSLIPFD 604
            D ++    TQF M  IE+ GL+K DFLGLKTLTL++ + D + +RG       +  I  D
Sbjct: 525  DSKTGKIATQFTMDLIEQCGLVKMDFLGLKTLTLIKHTEDLIRRRGGALANFSIQNICDD 584

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY +L    +  +FQ ES GM+  L+  +PD IED+IAL +LYRPGP+  I  +   
Sbjct: 585  DERTYKMLGEGMSAAVFQFESKGMQGILKRAKPDKIEDLIALNALYRPGPMAFIDQFIES 644

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K    KI    P +  +L+ET GVI+YQEQVMQ+AQ + G SL EAD+LRRAMGKK KE 
Sbjct: 645  KFDNSKIKYPDPCLQDILEETYGVIVYQEQVMQVAQKIGGLSLGEADILRRAMGKKKKEV 704

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M + K +F   A   G  K  A  IF++L  FA YGFNKSHAAAY+V++YQTA++K ++P
Sbjct: 705  MAEWKVKFAERAVTQGFDKKHAEEIFDILVPFAGYGFNKSHAAAYSVLAYQTAYLKANFP 764

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF+AA++T E+ +V+K+  + ++A +  + I+PPS+N     F V    I +    IKG
Sbjct: 765  AEFMAANLTNEITSVDKLPVYIEEAEKMGLTIVPPSINKSEPYFSVDKGEIIFGFLGIKG 824

Query: 845  VGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG   A  I      +  + S  DF  RVD   + +  +E L+  G  D F  +R  L+ 
Sbjct: 825  VGEQAAIDIYNERKTNGMYKSFIDFLDRVDLHTVKKSTVEVLIKTGCFDEFDINRATLIG 884

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
              +    YA   ++ + +   ++F +            +        +   E+ ++GFY 
Sbjct: 885  QYEAAMGYATQKKEGQESGQVSLFENTGIKEFSDFVFARVEDLPQKEKLRMEKDLVGFYI 944

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            SGHPLD Y+ I+                     +  M+ + +   T+KG  + + +F + 
Sbjct: 945  SGHPLDEYRKIIETTATLDLGHLERATPEKKYLIVGMLNAIKPYTTKKGQSMAFGSFEDL 1004

Query: 1024 AKEYEANFF 1032
                +  FF
Sbjct: 1005 HGVIDLVFF 1013


>gi|146281926|ref|YP_001172079.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri A1501]
 gi|145570131|gb|ABP79237.1| DNA polymerase III, alpha chain [Pseudomonas stutzeri A1501]
          Length = 1131

 Score = 1030 bits (2664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1019 (39%), Positives = 582/1019 (57%), Gaps = 55/1019 (5%)

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            N+ S ++F + A  AGI+PI G  + +           G      +  + LL    +GY+
Sbjct: 3    NMCSLVKFYKTAQGAGIKPICGADIWLA----------GCDEDGPLSRLTLLAMNPKGYR 52

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L EL+SR +   Q    V I   W++E   EGLI L+G   G I  A       +A  R
Sbjct: 53   NLTELISRGWTEGQRNDLVIIEREWVKEAA-EGLIALSGAKEGEIGHALLNGDEALAASR 111

Query: 171  LLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            L  ++++F DR Y+ +QR +R  D       V LA     PLVATN+  FL +ED+EAH+
Sbjct: 112  LAEWREVFADRFYLEVQRTNRVNDEEHLHAAVALAERSGAPLVATNDVRFLKQEDFEAHE 171

Query: 230  VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +     +    RPR  +   YLK   EM  +F+DLPEALENTVEIA+RC+  +Q+ 
Sbjct: 172  TRVCIGEGRTLDDPRRPRTYSDQQYLKTPEEMAELFADLPEALENTVEIAKRCNIEVQLG 231

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVR----LAQGAIAKGYHAQDYRQRLDFE 344
               LP F   E   I    ++ LR  +  GLE R    L +         Q Y  RL+FE
Sbjct: 232  TYFLPNFPVPEGMTI----DDYLRQVSFEGLEERLEVLLPKDTPDYEAKKQVYIDRLEFE 287

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L  I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLF
Sbjct: 288  LGTIIQMGFPGYFLIVMDFIKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLF 347

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPDFD+DFC D RD VI YV   YG   V+QIITFG++ AKA +RDV R 
Sbjct: 348  ERFLNPERISMPDFDVDFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARV 407

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                Y   DRL K+IP +    +  +A   +   R+    D     + E++ KLEG+ R 
Sbjct: 408  QGKSYGLADRLSKMIPFEVGMTLE-KAYEMEEPLRDFLAVDEDAREIWEMALKLEGITRG 466

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HA G+VI    L+   P+  D      VTQF+   +E+AGL+KFDFLGL+TLT+++ 
Sbjct: 467  TGKHAGGVVIAPTKLTDFAPIACDEEGGGLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKW 526

Query: 585  SLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            +L+ + +         V++  IP DD  TY LL    T  +FQLES GM++ ++ ++PDC
Sbjct: 527  ALETINREQAKKGLEPVNIDFIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKPDC 586

Query: 640  IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQ 692
            +ED+IALV+L+RPGP+ + +V  + NRK+G+ ++   HP      ++P+LK T G+I+YQ
Sbjct: 587  LEDLIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQYAGLEPVLKPTYGIILYQ 646

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQIAQ+++GY+L  AD+LRRAMGKK  EEM KQ+  FI G + NGI   +A NIF+L
Sbjct: 647  EQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAKQRGGFIEGCANNGIDADLAGNIFDL 706

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSH+AAY ++SYQTAW+K H+P  F+AA ++ +M N +K+    ++ R  
Sbjct: 707  VEKFAGYGFNKSHSAAYGLVSYQTAWLKAHHPSPFMAAVLSADMHNTDKVVILIEECRSM 766

Query: 813  NIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
             ++I PP VN     F V  D RI Y L A+KGVG      I E  A+  PF  L DFC+
Sbjct: 767  KLRIDPPDVNVSEFKFTVNDDGRIVYGLGAVKGVGEGPVDAIAECRAEGGPFKDLFDFCA 826

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWV 915
            R+D K++N+R LE+L+ +GALD  G                +R  LL +++   + A+  
Sbjct: 827  RIDLKRINKRTLEALIRSGALDRLGPYFFEEAKAYQANIDRNRAVLLAAMEEAVQAAEQT 886

Query: 916  EKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
             ++  + H ++F          +          +   R + E+  LG Y +GHP+D Y+ 
Sbjct: 887  ARSAESGHMDLFGGLFAEPEADVYGNHRNARELSLKERLKGEKDTLGLYLTGHPIDEYEG 946

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +R+   +   +           +A ++V+ +  K +KG ++G++T  + +   EA+ F
Sbjct: 947  EIRRFARQRIIDLRPAR--GEQTIAGLIVNLRVMKNKKGDKMGFITLDDRSGRIEASLF 1003


>gi|167835967|ref|ZP_02462850.1| DNA polymerase III subunit alpha [Burkholderia thailandensis MSMB43]
          Length = 1095

 Score = 1030 bits (2664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1042 (39%), Positives = 603/1042 (57%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AG
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNHDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  +WL+     GL+ L+G   G I  A    +   A +    + ++F    Y+ L
Sbjct: 112  GRAELDANWLEGDLAAGLLALSGAQQGDIGLALAAGNEAAARRHAQRWSQVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH          Q V +A    LP+VAT+   +++ +D+ AH+  + ++   +++   R
Sbjct: 172  QRHGQPGAEAYIQQAVTIAAELMLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + + + + +MV++F+DLP AL NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 232  QKRFTTEQFFRTQDDMVALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RL         +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSQEGLEKRLVQLYPDEAEREAQRDKYSQRLDFECGTIKKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+      ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVEYPDMRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM + +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAQHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     I ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCDVNGIAVLPPDINQSHYRFEPVAQADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 828  RSCTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRIVNRRTIEALIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            LD    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 888  LDSLHANRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKSALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MVIALLDDGTGQCEVTVF 1022


>gi|147669904|ref|YP_001214722.1| DNA polymerase III catalytic subunit, DnaE type [Dehalococcoides sp.
            BAV1]
 gi|146270852|gb|ABQ17844.1| DNA polymerase III catalytic subunit, DnaE type [Dehalococcoides sp.
            BAV1]
          Length = 1170

 Score = 1030 bits (2663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1038 (36%), Positives = 578/1038 (55%), Gaps = 37/1038 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ +SLL+G   ++ ++ +       A+AITD   +     F ++A  AGI+PI
Sbjct: 2    FCHLHVHTEFSLLDGMCRISQLVVRAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +  +   D    T   K        +VLL    +GY  LI+L SR +L        R
Sbjct: 62   LGSEFYLAYGDRTAKTAADK----NYYHLVLLAKNNKGYHNLIQLSSRSHLEG-FYYKPR 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L++  +EGL+ L+   SG + R    N    A +  L +KK F +  Y+ +QRH 
Sbjct: 117  IDKELLEKY-SEGLVCLSACPSGEVPRLILENRYDEAREAALWYKKTF-ENYYIEIQRHP 174

Query: 191  GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     S ++ +A   ++PLVATN++ +L +ED   HD+L+ +  + +VS + R ++ 
Sbjct: 175  MPDLEKINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKME 234

Query: 250  PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             ++ YLK+  EM   + D+P+A+ENT +IA  C+  L      LP     +     K  +
Sbjct: 235  GEYFYLKSPQEMAEAYQDIPDAIENTAKIAEMCNVSLDFGRLHLPEIDIPKG----KTPD 290

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L +    GL V              +   RL +EL+VI   +F+ YFL+  D I++ K
Sbjct: 291  EYLADLCYEGLPVFYPDAG-------PEILDRLKYELDVIKTTEFANYFLVTWDIIRFVK 343

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  +  G  RGS A S+  Y L IT +DP+++ L+FERFLN +R  MPD D+DF  DRR+
Sbjct: 344  EKGLYYGV-RGSAASSIVLYCLGITALDPIKYKLVFERFLNIERKEMPDIDMDFQDDRRE 402

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV  KYG + V+QIITFG+L AKAA+RDVGRAL M Y+ VDR+ K+IP  P   + 
Sbjct: 403  EVIEYVVGKYGRDHVSQIITFGTLGAKAAVRDVGRALGMAYADVDRVAKVIPFSPHMTLD 462

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+ + S  +E    D  V  L++ ++K+EGL RHASTHAAG+VI   PL+  VP+ R 
Sbjct: 463  -KAMEESSELKEMYNQDAVVRNLVDAARKVEGLSRHASTHAAGVVISKDPLTDHVPLQRL 521

Query: 549  VRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
             +     L +TQ+ M+ I K GL+K DFLGL  L +L K+   + +     +D   IP D
Sbjct: 522  SKENNLGLVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQDIDPLAIPLD 581

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T+G+FQLE +GMR+ ++ ++P    DI A+V+LYRPGP++ I  +   
Sbjct: 582  DQKTFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIPRFIKS 641

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G E I   HP ++P+L+ET GVI+YQEQV+ IAQ  SGY+L +AD+LR+AMGKKI   
Sbjct: 642  KHGLEPITYPHPALEPLLEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKKIAAV 701

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQK  F+ GA KNG ++ IA  +F L+  FA Y FNK+HA +YA+I+YQTA++K +YP
Sbjct: 702  MQKQKANFVDGAMKNGYTREIADEVFALVEPFAGYAFNKAHATSYALIAYQTAYLKANYP 761

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSL 839
            VE++ A +    D  EK+     +AR   I+++PP +N    +F++     G  +I + L
Sbjct: 762  VEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGANFEIEQAEGGVKKIRFGL 821

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            AAIK VG      I+    A+  + S+ED C R +   LN+RV+ESLV AGALD  G  R
Sbjct: 822  AAIKNVGVAAVEPIVAERKANGDYLSVEDLCRRAEGSSLNKRVMESLVKAGALDNMG-DR 880

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKH---ENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              L  +L NI   AQ  +K + +      ++F+ +       + LE+  V  +  + + E
Sbjct: 881  GTLFFNLPNILSLAQREQKMKDSNQTTMFDLFSQQSPVPMTNLELEESPV-TTREKLQWE 939

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            + ++G + S HP   Y     ++      +    +    + +A MV S +   TR+G   
Sbjct: 940  KELVGIFISEHPFTPYASSALEVTTALCGQIDEELHNQLVTVAGMVASVRVSATREGKPF 999

Query: 1016 GWVTFSEPAKEYEANFFP 1033
                  +     E   +P
Sbjct: 1000 VMAEIEDLVGRVEIAAWP 1017


>gi|320531635|ref|ZP_08032577.1| DNA polymerase III subunit alpha [Actinomyces sp. oral taxon 171 str.
            F0337]
 gi|320136164|gb|EFW28170.1| DNA polymerase III subunit alpha [Actinomyces sp. oral taxon 171 str.
            F0337]
          Length = 1197

 Score = 1030 bits (2663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1084 (33%), Positives = 577/1084 (53%), Gaps = 62/1084 (5%)

Query: 1    LTQYLEKSP--SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
            ++   + +P   FVHL VH+ YS+L+GA  + + + +     QPA+AITD   +F A EF
Sbjct: 4    MSSQEDAAPKDDFVHLHVHTDYSMLDGAGKIKDYVAEAKRLGQPALAITDHGYMFGAYEF 63

Query: 59   SQKACAAGIQPIIGCQLDIDMQ-DNLKMTN----------QGKTPFPTVPSIVLLVSTAE 107
               A AAGI+PIIG +  +         T              +   +   + LL    E
Sbjct: 64   YAAATAAGIKPIIGVEAYMTPGTSRFDKTRVFWGDESQRSDDVSARGSYTHMTLLSRNNE 123

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G   L+ + S   L  Q  ++ RI    L    + GLI  TG  S  +           A
Sbjct: 124  GLHNLMRMDSFASLEGQWGKAPRIDRELLSRY-SGGLIGSTGCPSSEVQTRLRLGQWDEA 182

Query: 168  EKRLLTFKKLFGDRL-YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
             +     + +FG    YV L  H    ++     +++LA     PL+ATN+S ++  ED 
Sbjct: 183  LRTAGELQDIFGKEFFYVELMDHGLEIEQRVTKDLLRLAQEIGAPLLATNDSHYVRPEDR 242

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSF- 283
               D ++ +   +V+S  DR R   D +YL+  SEM  +FS++P+A +NT+ +A +C   
Sbjct: 243  TIQDAMLCINSGSVLSDPDRFRFDGDTYYLRPGSEMRRLFSEMPQACDNTLLVAEQCDVH 302

Query: 284  --ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
               +   A  +P F   E +     +E+    +   G++ R        G   +D R++ 
Sbjct: 303  FRTVDEGASFMPAFPVPEGE----TDESWFIKECWRGMDHRF------NGDIPEDCRKQA 352

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            ++E++VI +M F GYFL+VAD+I WAK + I VGPGRGSGAGS+ AYA+ IT+++PLR  
Sbjct: 353  EYEISVITQMGFPGYFLVVADYINWAKAHGIRVGPGRGSGAGSMVAYAMGITELNPLRHG 412

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            L+FERFLNP+R+SMPD D+DF + RRDEVI YV+ KYG +R++Q++T+G ++AK +L+D 
Sbjct: 413  LIFERFLNPERISMPDIDVDFDERRRDEVIEYVREKYGADRISQVVTYGVIKAKQSLKDS 472

Query: 462  GRALQMPYSQVDRLCKLIPND-PAHPVSLQAIA--------DDSRFREARLADPSVDRLL 512
             R +  PY+  DRL K +P       +S++ I         +   FR+    DP   +++
Sbjct: 473  SRVMGYPYAVGDRLTKAMPPSVQGKDISIKGIFNPDDERYGEAEEFRKLHAEDPDAQKIV 532

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            E+++ LEG+ R    HA  +++    L+ ++PM + ++    +TQF+    E  GL+K D
Sbjct: 533  ELAKGLEGMTRQWGVHACAVIMSSATLTDIIPMMQRLQDGAVITQFDYPTCEHLGLLKMD 592

Query: 573  FLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGL+ LT++  +L+ + A     +D+  +  DD  TY LL+   TLG+FQL+  GMR  
Sbjct: 593  FLGLRNLTVISDALENIVANGKPALDIDHVELDDRATYELLSRGETLGVFQLDGGGMRTL 652

Query: 632  LEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKET 685
            L  M+PD  EDI A+ +LYRPGP+  ++   Y  RKNG +++V IHP +    DP+L  T
Sbjct: 653  LRLMKPDNFEDISAVGALYRPGPMGAESHTNYALRKNGLQEVVPIHPELKDALDPILGTT 712

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+I+YQEQVM+IA  L+G+S+ +AD LR+AMGKK  + + K    F +G  + G SK  
Sbjct: 713  HGLIVYQEQVMKIATDLAGFSMGKADALRKAMGKKKMDILAKMFVEFEAGMVQAGFSKES 772

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               +++++  FA Y FNK+H+AAY V+SY TA++K HYP E++AA +T + DN +K+  +
Sbjct: 773  VKTLWDVVVPFAKYAFNKAHSAAYGVVSYWTAYLKAHYPTEYMAALLTSQKDNKDKLAVY 832

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDS 864
              + R   I ++PP VN     F   D  + + L+A++ VG      I+ A  +   F S
Sbjct: 833  LGECRHMGITVLPPDVNASRAQFSAVDEDVRFGLSAVRNVGINVVDAIVAAREEKGEFTS 892

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
             EDF  +V +   N+R ++SL+ AGA D  G++R  L    ++       V++N      
Sbjct: 893  FEDFLDKVPAVVCNKRTIDSLIKAGAFDSLGHTRRSLQACHEDFVDEVIGVKRNEAAGQF 952

Query: 925  NIFAHEKGTFSDK------------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
            ++FA   G   D               +      +   +   E+ +LG Y S HPL   +
Sbjct: 953  DLFASLVGGPDDADDSPFGNGPVFSSDVPNLPEWDKKDKLAYERDMLGLYVSDHPLMGLE 1012

Query: 973  PILRKMGIKGYEESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
             +L K+  K   E         G  + +A ++ S  +K T++G+        + A   E 
Sbjct: 1013 GLLGKLADKEISELHENDELPDGAMVTIAGLITSLTRKTTKQGNLWAIAQVEDLAGSVEV 1072

Query: 1030 NFFP 1033
             FFP
Sbjct: 1073 LFFP 1076


>gi|73749142|ref|YP_308381.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. CBDB1]
 gi|289433116|ref|YP_003462989.1| DNA polymerase III subunit alpha [Dehalococcoides sp. GT]
 gi|73660858|emb|CAI83465.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. CBDB1]
 gi|288946836|gb|ADC74533.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. GT]
          Length = 1170

 Score = 1030 bits (2663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1038 (36%), Positives = 578/1038 (55%), Gaps = 37/1038 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ +SLL+G   ++ ++ +       A+AITD   +     F ++A  AGI+PI
Sbjct: 2    FCHLHVHTEFSLLDGMCRISQLVVRAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +  +   D    T   K        +VLL    +GY  LI+L SR +L        R
Sbjct: 62   LGSEFYLAYGDRTAKTAADK----NYYHLVLLAKNNKGYHNLIQLSSRSHLEG-FYYKPR 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L++  +EGL+ L+   SG + R    N    A +  L +KK F +  Y+ +QRH 
Sbjct: 117  IDKELLEKY-SEGLVCLSACPSGEVPRLILENRYDEAREAALWYKKTF-ENYYIEIQRHP 174

Query: 191  GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     S ++ +A   ++PLVATN++ +L +ED   HD+L+ +  + +VS + R ++ 
Sbjct: 175  MPDLEKINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKME 234

Query: 250  PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             ++ YLK+  EM   + D+P+A+ENT +IA  C+  L      LP     +     K  +
Sbjct: 235  GEYFYLKSPQEMAEAYQDIPDAIENTAKIAEMCNVSLDFGRLHLPEIDIPKG----KTPD 290

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L +    GL V              +   RL +EL+VI   +F+ YFL+  D I++ K
Sbjct: 291  EYLADLCYEGLPVFYPDAG-------PEILDRLKYELDVIKTTEFANYFLVTWDIIRFVK 343

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  +  G  RGS A S+  Y L IT +DP+R+ L+FERFLN +R  MPD D+DF  DRR+
Sbjct: 344  EKGLYYGV-RGSAASSIVLYCLGITALDPIRYKLVFERFLNIERKEMPDIDMDFQDDRRE 402

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV  KYG + V+QIITFG+L AKAA+RDVGRAL M Y+ VDR+ K+IP  P   + 
Sbjct: 403  EVIEYVVGKYGRDHVSQIITFGTLGAKAAVRDVGRALGMAYADVDRVAKVIPFSPHMTLD 462

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+ + S  +E    D  V  L++ ++K+EGL RHASTHAAG+VI   PL+  VP+ R 
Sbjct: 463  -KAMEESSELKEMYNQDAVVRNLVDAARKVEGLSRHASTHAAGVVISKDPLTDHVPLQRL 521

Query: 549  VRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
             +     L +TQ+ M+ I K GL+K DFLGL  L +L K+   + +     +D   IP D
Sbjct: 522  SKENNLGLVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQDIDPLAIPLD 581

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T+G+FQLE +GMR+ ++ ++P    DI A+V+LYRPGP++ I  +   
Sbjct: 582  DQKTFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIPRFIKS 641

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G E I   HP ++P+L+ET GVI+YQEQV+ IAQ  SGY+L +AD+LR+AMGKKI   
Sbjct: 642  KHGLEPITYPHPALEPLLEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKKIAAV 701

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQK  F+ GA KNG ++ IA  +F L+  FA Y FNK+HA +YA+I+YQTA++K +YP
Sbjct: 702  MQKQKANFVDGAMKNGYTREIADEVFALVEPFAGYAFNKAHATSYALIAYQTAYLKANYP 761

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSL 839
            VE++ A +    D  EK+     +AR   I+++PP +N    +F++     G  +I + L
Sbjct: 762  VEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGANFEIEQAEGGVKKIRFGL 821

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            AAIK VG      I+    A+  + S+ED C R +   LN+RV+ESLV AGALD  G  R
Sbjct: 822  AAIKNVGVAAVEPIVAERKANGDYLSVEDLCRRAEGSSLNKRVMESLVKAGALDNMG-DR 880

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKH---ENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              L  +L NI   AQ  +K + +      ++F+ +       + LE+  V  +  + + E
Sbjct: 881  GTLFFNLPNILSLAQREQKMKDSNQTTMFDLFSQQSPVPMTNLELEESPV-TTREKLQWE 939

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            + ++G + S HP   Y     ++      +    +    + +A MV S +   TR+G   
Sbjct: 940  KELVGIFISEHPFTPYASSALEVTTALCGQIDEELHNQLVTVAGMVASVRVSATREGKPF 999

Query: 1016 GWVTFSEPAKEYEANFFP 1033
                  +     E   +P
Sbjct: 1000 VMAEIEDLVGRVEIAAWP 1017


>gi|269926189|ref|YP_003322812.1| DNA polymerase III, alpha subunit [Thermobaculum terrenum ATCC
            BAA-798]
 gi|269789849|gb|ACZ41990.1| DNA polymerase III, alpha subunit [Thermobaculum terrenum ATCC
            BAA-798]
          Length = 1180

 Score = 1029 bits (2662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1044 (35%), Positives = 592/1044 (56%), Gaps = 39/1044 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL +HS YSLL+G   + + +    A    AIA+TD   ++ A+E   +A  AGI
Sbjct: 2    SSDFVHLHLHSDYSLLDGLGKIKDYVSLAKAYGMKAIALTDHGVMYGAIEMYTEALEAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC+L +  +       +  + +     +++L    EGYQ LI+LVS  +L      
Sbjct: 62   KPIIGCELYVAPRSRHDREKRLDSDYA---HLLVLAKDYEGYQNLIKLVSYAFLEG-YYY 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-FGDRLYVNL 186
              RI    L +  ++GLI+ +    G + +       + A +    ++ +   +  ++ L
Sbjct: 118  KPRIDHELLAKY-SKGLIVTSSCIGGEVPQLLLQGKDKEARELADKYRSIVGRENYFIEL 176

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++    +++++LA   E+PLVAT +  +  +ED    D+L+ V     V+ K+R
Sbjct: 177  QDHPFEEQRIANTKLIELAKDLEIPLVATCDVHYPRQEDAAIQDILLCVQTGKQVTDKNR 236

Query: 246  PRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R++ D +Y+++  EM   F D PEA++NT  IA  C+  + +   ILP F   E  D+Q
Sbjct: 237  MRMSSDTNYMRSPQEMEQAFRDYPEAIKNTALIAEMCNLQIPMGKWILPHFDVPEGYDLQ 296

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR     GL  + ++         Q+ R RL++EL+VI    ++ Y LIV DF+
Sbjct: 297  ----SYLRYLCEEGLRQKYSE-------VTQEIRDRLEYELDVINTKGYTAYMLIVQDFV 345

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WA+   I V   RGS AGS+ +Y L IT  DP+ + L FERFL   R S PD D+DF  
Sbjct: 346  NWARSRGIAV-TSRGSAAGSLVSYLLNITTADPIEYKLPFERFLTIHRPSPPDIDMDFED 404

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EVI YV +KYG E VAQIITFG+++A+AA+RDVGRAL + YS  D + K+I    +
Sbjct: 405  KRREEVIEYVTSKYGEENVAQIITFGTMEARAAVRDVGRALGISYSDTDTIAKMIQPGWS 464

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 +A+ +    R+    D  + +L++++ KLEG+ RHASTHAAG++I   P+    P
Sbjct: 465  IK---EALENSLALRQWYERDERIKQLIDVASKLEGVTRHASTHAAGVIISREPIINYAP 521

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            + +D     P+ QF+M+  EK GL+K DFLGL  L++L +++  + Q RG+ ++L  +P 
Sbjct: 522  LQKDKNGSRPLVQFDMRMCEKIGLLKMDFLGLANLSILGRAVKTIKQTRGIDIELDKLPL 581

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +TY LL++  T G+FQLES+GMR+ ++ ++P  I D+ A+++LYRPGP+D I  Y  
Sbjct: 582  DDTKTYELLSSGETTGVFQLESAGMRRYIKELKPSNIRDVAAMIALYRPGPMDMIPTYIA 641

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+E +  + P ++P+LK++ GV++YQ+ ++ IA  ++GY+  EAD LR+A+GKKI+E
Sbjct: 642  RKHGREPVEYLVPGLEPILKDSYGVLVYQDDILLIAIEIAGYTWEEADKLRKAVGKKIRE 701

Query: 724  EMDKQKERFISGASKNGI-SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E++ Q+++FI G  ++G  S   A  +++ +  FA YGFNK+HAAAY++++YQTA++K +
Sbjct: 702  ELEAQRDKFIKGCQEHGGLSPEKARELWDWMEPFARYGFNKAHAAAYSLVAYQTAYLKAN 761

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-------- 834
            YP E++++ +T+ MDN EK+     +  +  I+++PPSVN    +F +            
Sbjct: 762  YPSEYMSSLLTVGMDNSEKVASGIVECNRMGIRVLPPSVNDSFEEFTLEPQSQRPGEPIP 821

Query: 835  IYYSLAAIKGVGTTTARHIMEASA---DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            I + L A+K VG+     I+ A     DK F S E FC+ VD K++N+R LESL+ AGA 
Sbjct: 822  IRFGLGAVKNVGSGPISAIVSARESLPDKRFKSFEHFCTVVDFKQINKRALESLIKAGAF 881

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENSS 949
            D FG  R QLL ++D      Q +++       ++F     +      +TL +       
Sbjct: 882  DEFG-HRSQLLAAIDEAIALNQKMQRASDLGQFSLFGDAFSSQDHLPSLTLPEVDEAPKE 940

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 E+ +LG Y S HPL+      R        E    + G  +R+AAM+V+ Q + T
Sbjct: 941  QLLAWEKEMLGLYLSEHPLNAVLGKRRLDSTSLISEISEEMVGQTVRVAAMLVNPQIRTT 1000

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            ++   +      +     +   FP
Sbjct: 1001 KRQQEMLIGKLEDQTSSIDFVVFP 1024


>gi|238923437|ref|YP_002936953.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
 gi|238875112|gb|ACR74819.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
          Length = 1181

 Score = 1029 bits (2662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/1048 (33%), Positives = 553/1048 (52%), Gaps = 33/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL  H+ YSLL+G+  +   + ++      + AITD  N++  +EF + A A  I P
Sbjct: 17   SFCHLHTHTEYSLLDGSNKIKEYVKRVKELGMNSAAITDHGNMYGVVEFYKTAKANDINP 76

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ +          +          ++LL     GY  L+++VS  +         
Sbjct: 77   VIGCEVYVAPNSRFDR--ETSHGDDRYYHLILLAENNTGYANLMKIVSIGFTEG-YYYRP 133

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L+    EGLI L+   +G I R         A++    ++  F  D  ++ LQ 
Sbjct: 134  RVDFETLERYH-EGLICLSACLAGEIPRYIVRGFYDEAKEIARKYQDCFGKDNFFLELQD 192

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+     Q+++++   E+ LV TN+  +  E D EAHDVL+ +     VS +DR R
Sbjct: 193  HGIDDQKLVNQQLLRMSKELEIGLVCTNDVHYTYESDAEAHDVLLCIQTGKKVSDEDRMR 252

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +  K+  +M ++F    EA+ENT +IA RC+  L+     +P++   E  D    
Sbjct: 253  YDGGQFFVKSEEQMRALFPYATEAIENTQKIADRCNVTLEFGNYKIPKYEVPEGYD---S 309

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E  L      G   +            +     +D+EL +I  M F  Y LIV D+I W
Sbjct: 310  AEAFLTELCEKGFREKYIGCGEYSADELKKIHADMDYELGIIKTMGFIEYILIVWDYINW 369

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             + ++  VGPGRGS AGS   Y   ITDIDP++++LLFERFLNP+R+SMPD D+DF    
Sbjct: 370  CRTHDCWVGPGRGSAAGSRVCYCTGITDIDPVKYNLLFERFLNPERVSMPDIDVDFEYAE 429

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R   I YVQ KYGH+ V QI+TFG++ A+  ++ VG+AL  PY++ DRL K++P +    
Sbjct: 430  RYRAIEYVQQKYGHDSVTQIVTFGTMAARGVIKSVGKALDFPYAETDRLAKMVPQELNIT 489

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +  F+    +D  V  +++++++LEGL  H S HAAG+VI     S  VP+ 
Sbjct: 490  ID-KALQMNPEFKGIYDSDARVHEMIDMAKRLEGLPNHTSVHAAGVVIYPGVASDYVPLG 548

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            R      P  ++NM  +E+ GL+K DFLGL+TLT+L+ S+  +   RG+ VD+  I F+D
Sbjct: 549  RA-NDGSPTAEYNMVQLEELGLLKMDFLGLRTLTVLKDSVKNIKASRGIDVDIDHIDFND 607

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T   + T  T G+FQLES+GM+  ++ + P   EDI+A +SLYRPGP+D I  Y   K
Sbjct: 608  KGTLDFIGTGKTEGVFQLESAGMQSFMKELSPQSFEDIVAGISLYRPGPMDFIPNYIKGK 667

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  ++I  + P ++ +L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM KK +  +
Sbjct: 668  NNPKEISYVTPELESILEPTYGCIVYQEQVMQIVQKLAGYTMGQADNIRRAMSKKKQYVI 727

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            D +++ F+         G   NGI +  A +I++ +  FA Y FNKSHAAAYA IS QTA
Sbjct: 728  DAERQSFVYGDEERGIKGCVANGIDEKAANSIYDSMVDFAKYAFNKSHAAAYAKISVQTA 787

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K +YPVEF+AA MT  +DN  K  ++    R   I+++PP +N    +F    + + Y
Sbjct: 788  WLKNYYPVEFMAALMTSVIDNSAKAAQYLYSCRDMGIKVLPPDINCGQGEFTAEGDHVRY 847

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKK-LNRRVLESLVFAGALDCFG 895
             + AIK +G      I+E       + +L DF  R   K+ +N+R +E+L+ AGA D   
Sbjct: 848  GMYAIKSLGRPVIDQIIEERESGGRYRTLSDFIERTCQKELINKRAIENLIKAGACDSLD 907

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFE 953
             +R Q+     +I    Q  +K+      ++F    ++   S ++        ++     
Sbjct: 908  GTRKQMAMVYASIVDRVQHDKKSTMAGQMSLFDLVSDEDRQSFELKYPNVGEYDAEEALA 967

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE--------SVATIRGNNIRLAAMVVSKQ 1005
             E+ VLG Y SGHPL+ Y   L+K       +        +V      ++ +  M+ +K 
Sbjct: 968  YEKEVLGIYLSGHPLEKYAATLKKNITANAIDFVLEEESGAVKIEDNAHVVIGGMIATKT 1027

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K T+    + ++T  +     E   FP
Sbjct: 1028 IKFTKYNQAMAFITIEDLTGTVEVIIFP 1055


>gi|167569335|ref|ZP_02362209.1| DNA polymerase III subunit alpha [Burkholderia oklahomensis C6786]
          Length = 1174

 Score = 1029 bits (2662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1042 (39%), Positives = 602/1042 (57%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F ++A  AG
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARDAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNHDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    EGL+ L+G   G I  A    +   A +    + K F    Y+ L
Sbjct: 112  GRAELDASWLEGEFAEGLLALSGAQQGDIGLALAAGNEAAARRHAERWAKTFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   F++ +D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQFMTADDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T D + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 232  QKRFTTDQFFRTQDDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RL         +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSKEGLEKRLVQLYPDEAEREAQRDTYCQRLDFECGTIKKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPASFQMLKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+      ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVEYPDMRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG++   A  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHRELFREGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     + ++ P +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLSPDINQSHYRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 828  RSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            LD    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 888  LDSLHANRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGEPAHQHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKSALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MVIALLDDGTGQCEITVF 1022


>gi|218962013|ref|YP_001741788.1| DNA polymerase III, alpha subunit [Candidatus Cloacamonas
            acidaminovorans]
 gi|167730670|emb|CAO81582.1| DNA polymerase III, alpha subunit [Candidatus Cloacamonas
            acidaminovorans]
          Length = 1146

 Score = 1029 bits (2662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1033 (36%), Positives = 585/1033 (56%), Gaps = 31/1033 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  ++ ++        PA+AITD  NLF A++F + A  AGI+P
Sbjct: 2    SFVHLHNHTQYSMLDGACRVDRMIKLAKEYAMPAVAITDHGNLFGAIDFYKTAKNAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +  I   D    T + +  +     ++LL    +GY+ L++L S  Y+        
Sbjct: 62   ILGIEAYIINGDLESETGKNEIRY----HLILLAQNEQGYKNLMKLSSYSYIKG-FYYKP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI  + L++  +EGLI L+    G I    + +  Q AE+  L +K LF +  Y+ +Q H
Sbjct: 117  RISKTLLKQY-SEGLICLSACVKGEIPALIYNDRMQQAEEVALWYKDLFQEHFYIEIQDH 175

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                ++    +++ LA   E+P+V TN+  +L++ DYEAHD+L+ +    ++   DR   
Sbjct: 176  NLEPEKKIMPRLIDLAKKLEIPMVLTNDCHYLNKNDYEAHDILLCIQTGKLLHDPDRLHY 235

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              +  Y K+  EM  +F D+PEA  NT++IA      L     +LP     E     K  
Sbjct: 236  GTNQLYFKSPEEMKELFPDVPEAYNNTLKIADMVDLELHYDKFLLPNI---ETPPEFKTM 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR       +++            +  +QR+++EL VI RM F+GYFLIV D I  A
Sbjct: 293  GEYLRFLCYENAKIKYPD-------LNETIKQRIEYELEVIDRMGFNGYFLIVKDIIDNA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +K ++PVGPGRGSGAGS+ AY L IT IDPL++ L+FERFLNPDR+SMPD DIDFC   R
Sbjct: 346  RKQSVPVGPGRGSGAGSIVAYLLDITQIDPLQYGLVFERFLNPDRISMPDIDIDFCAQNR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +VI Y+  +YG E V QIITF +L AK+ ++DV R L +P S+ + + K I     +  
Sbjct: 406  SKVIDYIIQRYGRESVTQIITFSTLGAKSVIKDVARVLSVPASEANAITKTI---QGNKT 462

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A      F     ++     + + S+ LEGL R  S H AG+VI    L+  VP+  
Sbjct: 463  LDEAYNQYPEFSSLINSNDLYRTIFKHSKVLEGLVRQTSVHPAGVVIAPGDLTDYVPLAC 522

Query: 548  DVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
              +     + + QF  KW+    L+K D LGLK LTL+QK++D + Q + + +D++ I  
Sbjct: 523  STQKGEEKVILVQFEGKWLNDLKLLKMDILGLKNLTLIQKTIDLVKQAQDIDIDINHISL 582

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D + Y++L    T G+FQ ES GMR+ L  ++P+ IED+IA+V+LYRPGP+  I  Y  
Sbjct: 583  EDKKVYNILGKGETDGVFQFESDGMRKYLIELKPNKIEDLIAMVALYRPGPMQFIDSYIA 642

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+EK+V  HPL++  LKET GV IYQEQVMQIA+ + G++  EAD LR+AMGKK  +
Sbjct: 643  RKHGREKVVYDHPLMENALKETYGVTIYQEQVMQIAREMGGFTGGEADSLRKAMGKKNSD 702

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M + +E+F  GA    +   +   I++   +FA+Y FNKSHA  YA+++YQTA++K +Y
Sbjct: 703  LMQQYQEKFRQGAKAQNVPDAVIEKIWQDWLRFAEYAFNKSHATCYALVAYQTAYLKAYY 762

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+AA ++LE D+  KI    +  ++  I+I+PP++N    +F+V    + + L AIK
Sbjct: 763  PVEFMAALLSLE-DDPTKIPGKIEVCKKMGIKIIPPNINRSDSEFRVHGKEVLFGLRAIK 821

Query: 844  GVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             +G    R I+E  + + P+ S+ +FC+R+DS  +N+ +LESL+ +GA+D    +R Q  
Sbjct: 822  NLGDAAMRDIIEDRNQNGPYTSIFEFCNRLDSTSVNKTILESLIASGAMDELEGTRAQKW 881

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVL 959
              ++   +++   +K+R      IF        D      L      +   + E E+ VL
Sbjct: 882  NVIELALQFSSNDQKDRKRGQSTIFDFMDTEDEDNNYYPPLPSVEPWSYIYQLEKEKEVL 941

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GFY SGHPL  Y+ +++ +       +  T     + +A ++ +  +KK  KG+ I +V 
Sbjct: 942  GFYLSGHPLFEYRSLIKHLTNANSS-TGKTKNNGELLIAGIINNISKKKDNKGNPIAFVE 1000

Query: 1020 FSEPAKEYEANFF 1032
            F +   ++E   F
Sbjct: 1001 FEDLCGKFEVPLF 1013


>gi|152990427|ref|YP_001356149.1| DNA polymerase III subunit alpha [Nitratiruptor sp. SB155-2]
 gi|151422288|dbj|BAF69792.1| DNA polymerase III, alpha subunit [Nitratiruptor sp. SB155-2]
          Length = 1174

 Score = 1029 bits (2661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1060 (36%), Positives = 602/1060 (56%), Gaps = 47/1060 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+F HL +H+ YSLL+GA  +  +  K       A+A+TD  N+F A++F +   A G++
Sbjct: 3    PNFTHLHLHTEYSLLDGANKIKALAKKAKELGMSAVAMTDHGNMFGAIDFYKTMKAEGLK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG +  +   D+L     G         + L      GY+ L+ L S  Y+       
Sbjct: 63   PIIGMEAYLHNSDDL-----GDKSTRQRFHLCLFAKNEIGYKNLMFLSSMSYIKG-FYYY 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRA---------FFFNSSQVAEKRLLTFKKLFG 179
             RI    L E  +EGLI  +    G ++           F     + A+K  L +K++FG
Sbjct: 117  PRINKKLLAE-HSEGLICTSACLQGEVNWHLNTNERNTKFGAKGYEEAKKVALWYKEVFG 175

Query: 180  DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            D  Y+ L RH  +D+   + Q+++L+    + +VATN++ +L ++D E H+  M +A + 
Sbjct: 176  DDFYLELMRHGIHDQLAIDEQIIKLSLETGIKIVATNDTHYLEKKDAEPHEAFMCIAMNK 235

Query: 239  VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-- 295
            +    +R R +  + YLK+  E+  +++D+PEALENT EI  +C+  L +  P  P F  
Sbjct: 236  LYDDPNRLRHSVHEFYLKSPEEIAKLYADIPEALENTQEIVDKCNLELNLGNPTPPNFKF 295

Query: 296  ---IEKECDDIQKEEENE--------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                 KE        E                 GL+ RL      +    Q Y  RL  E
Sbjct: 296  TVEYAKEYGLEVPTSERYSFENDEVLFEYICKEGLQKRLEYVPKEQH---QKYWDRLQHE 352

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +++I +MKF GY +IV DF++ AKK  IPVGPGRGS AGS+ AYA+ ITDIDPL+++LLF
Sbjct: 353  IDIIKKMKFPGYMIIVWDFVREAKKRGIPVGPGRGSAAGSLVAYAMGITDIDPLKYNLLF 412

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD DIDFCQ+RR E+I YV  KYG   VAQ+ITFG+L AK  +RDV R 
Sbjct: 413  ERFLNPERVSMPDIDIDFCQERRGEIIDYVVQKYGRYNVAQVITFGTLLAKGVIRDVARV 472

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L + Y+  DR+ KLIP+     +  +A   +S+ +E   +DP  +R+   +  LEGL R+
Sbjct: 473  LGLSYNDGDRMAKLIPDKLGITLK-EAYEQESKIKELIESDPKFERVWRFALALEGLKRN 531

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            A  HAAG+VI +  L    P+Y+    +  VTQ+++ ++E   LIKFDFLGLKTLT++  
Sbjct: 532  AGMHAAGVVISNEELWHKTPLYKPSGEETIVTQYSLNFLEDVDLIKFDFLGLKTLTVIDN 591

Query: 585  SLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++  + +R   K+D + I  +D + Y L+ +  TLG+FQ+ES GM++    ++P   EDI
Sbjct: 592  AVKLVEKRYNTKIDWNRIDLNDKKVYDLIQSGHTLGLFQIESDGMQRLNARLKPTTFEDI 651

Query: 644  IALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVM 696
            IA+++LYRPGP+++ +   +  RK+G++++           +   L+ T G+I+YQEQVM
Sbjct: 652  IAVLALYRPGPMESGMLDDFIERKHGRKQVYYPFEEVSFDELKETLEPTYGMIVYQEQVM 711

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            QI Q + G+SL EAD++RRAMGKK ++ M++ K  F+  AS+ G     +  +FEL+ KF
Sbjct: 712  QIVQTIGGFSLGEADIIRRAMGKKKRDLMEEYKREFVKRASERGFDAKKSEILFELIEKF 771

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A YGFNKSH+AAYA+I++QTA++K +YP EF+AA +T E DN +KI K+  + ++  I++
Sbjct: 772  AGYGFNKSHSAAYAMITFQTAYLKAYYPQEFMAALLTSEQDNTDKIVKYVDEVKRLGIKL 831

Query: 817  MPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            +PP VN   ++F      G++ I + L AIKGVG +    I+EA  +  F  L DF  R+
Sbjct: 832  LPPDVNLSSLEFNATTIDGEDVILFGLGAIKGVGKSAVLSILEARNEGVFKDLNDFLQRI 891

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D  K+N++VLE+L+ +GA+D FGYSR  +L  ++ I   +  + + +     ++F   + 
Sbjct: 892  DPNKVNKKVLEALIKSGAMDSFGYSRRTMLLGIEKIVTASHEIARAKKMAENSLFGDAQE 951

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                K+ LE     +     E E+  LGFY SGHPLD ++  L K+      +       
Sbjct: 952  LIDIKVELEDLGEYDMKQILEFEKETLGFYVSGHPLDPFRSELEKIHYTLSSDLENIADS 1011

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +       V   + K + KG++ G V+  +     E   F
Sbjct: 1012 SEALFVGKVEEIKTKISNKGNKFGIVSIMDLHGNIEMMLF 1051


>gi|222111091|ref|YP_002553355.1| DNA polymerase iii subunit alpha [Acidovorax ebreus TPSY]
 gi|221730535|gb|ACM33355.1| DNA polymerase III, alpha subunit [Acidovorax ebreus TPSY]
          Length = 1179

 Score = 1029 bits (2661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1057 (39%), Positives = 599/1057 (56%), Gaps = 59/1057 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   ++ ++   A D QPA+AITD NNLF A++F ++    G++PI
Sbjct: 2    FVHLRLHTEFSVVDGTTRIDEVVKAAAKDGQPALAITDLNNLFGAIKFYKEGRGKGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++                    +VLLV    GY  L EL++R +  +  +    
Sbjct: 62   LGAEIYLE-----------GEAAGAPSRMVLLVQNRTGYLNLSELLARAWTRNIVRNQAL 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
                WLQE+G  GLI L G  +GP+ +A        A +  L    +F  R Y+ +QR  
Sbjct: 111  CTWEWLQELGD-GLIALAGAQAGPVGQALMKGDDAGAAQLALRLAGIFPHRFYLEVQRAG 169

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D    +  VQLA    LP+VAT+   F + +DYEAH+  + +A   +++   R  R 
Sbjct: 170  RPDDEAHVTAAVQLAARLALPVVATHPVQFATPDDYEAHEARVCIAEGEILANPRRVRRF 229

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K+ +EM ++F+D+P AL NTVE+A+RC+  L +  P LP F       +    E
Sbjct: 230  TREQYFKSSAEMEALFADVPSALANTVEVAKRCNVSLVLGKPQLPNFPIPGGMTM----E 285

Query: 309  NELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R+ +  GLE RL         +      Y++RL+FEL  I +M F GYFLIV DFIQ
Sbjct: 286  QYFRHASHEGLEERLLHLYPDTAERDRQRPRYQERLEFELGTILKMGFPGYFLIVGDFIQ 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAKKN  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 346  WAKKNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQA 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV++KYG E V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P  
Sbjct: 406  NRDRVIDYVKDKYGKEAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGQ 465

Query: 486  PVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
              +L               A+  +    E    +  V  ++E++QKLEG+ R+   HA G
Sbjct: 466  TYTLAYPPEPKKEGDKNNYALELEPILYERVRKEEDVRTIIEMAQKLEGMTRNIGMHAGG 525

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F+ Q
Sbjct: 526  VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMQ 585

Query: 592  RGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R    +      IP DD  TY L +   T  +FQ ES GM+  L+  +P  +ED+IAL +
Sbjct: 586  RHKGQENFAFENIPLDDAATYKLFSDGKTEAVFQFESRGMQGMLKEARPSRLEDLIALNA 645

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  + NRK+GKE +   HPL++P+L ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 646  LYRPGPMDLIPSFVNRKHGKEVVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM + +  F  GA++ GIS+  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 706  GADMLRRAMGKKKAEEMAEHRAIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVD 827
            Y++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA + F +   PP +N     
Sbjct: 766  YSLLAYHTGWLKVHYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGMTFEPPDINRGNYR 825

Query: 828  FKVGDNR-IYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKK 876
            F+   ++ I Y L A+KG G      I+ A              PF SL DFC RVD  +
Sbjct: 826  FEPVTDKVIRYGLGAVKGTGQQAIEAIIAAREGQGVGPQGATRGPFKSLFDFCVRVDRTR 885

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK----G 932
            +N+R +E+L+ AGA D    +R  L+ SLD   ++A     N       +F        G
Sbjct: 886  VNKRTVEALIKAGAFDALQLNRAALVASLDRAFEFANAQIANAN--QGGLFDMMGDDAIG 943

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
            + + +  L          R   E+  +GFY SGH  D     +R+      +E V +   
Sbjct: 944  SSTQEPDLVDVMPWGIKERLMQEKTAVGFYLSGHLFDEVHQEVRRFVRTAIDELVDSRET 1003

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                +A +V   +    ++G R+      + +   EA
Sbjct: 1004 Q--VVAGIVSDYRVINGQRG-RLALFKLDDKSGVIEA 1037


>gi|148261382|ref|YP_001235509.1| DNA polymerase III subunit alpha [Acidiphilium cryptum JF-5]
 gi|146403063|gb|ABQ31590.1| DNA polymerase III, alpha subunit [Acidiphilium cryptum JF-5]
          Length = 1139

 Score = 1029 bits (2661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/1032 (46%), Positives = 657/1032 (63%), Gaps = 26/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VHS+YSL EGA+  + I      +  PA+AITDT+NLF ++EFSQ     G+QP
Sbjct: 5    DFVHLRVHSAYSLSEGAIKPDKIATLARDNAMPAVAITDTSNLFGSIEFSQACMGKGVQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GCQ+ +   D          P      +VLL   A G+  L +L SR +L  +     
Sbjct: 65   IVGCQIGLARTD---------LPRLPPDPLVLLAKDATGFANLSKLSSRSFLDTEPGLRP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            +I L  L++   EGL +LTGG  GP+ R         A + L    + F DRL V L+RH
Sbjct: 116  QISLDTLRD-HHEGLFLLTGGRFGPVGRLLGDGQRPEAARLLAALAETFPDRLAVELERH 174

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +R  E  ++ LA    LPLVATN   F +E  +EAHD L+ +A   V+S+ +R RV
Sbjct: 175  DLPTERAVEPGLITLADEAGLPLVATNECFFATETMHEAHDALLCIAEGRVLSEAERRRV 234

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            TP H+ K  +EM   F+DLP+A +NT+ IARRC+       P+LP  I  +  D    E 
Sbjct: 235  TPHHWFKPAAEMRRRFADLPDACDNTLAIARRCAIAAPTRKPLLP--ICPKVRD-GATEA 291

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR  A  GL +RLA         A+ YR+RL  EL +I +M F GYFLIVADFIQWAK
Sbjct: 292  ETLRAMAEEGLALRLAAMNADAATAAK-YRERLALELGIIEQMGFPGYFLIVADFIQWAK 350

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               IPVGPGRGSGAGS+ A+AL ITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQ+RRD
Sbjct: 351  SQGIPVGPGRGSGAGSLAAWALLITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQERRD 410

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV+ +YG +RVAQIITFG LQA+AA+RDVGR L +PY QV+++ +++PN+PA P+ 
Sbjct: 411  EVIAYVRREYGADRVAQIITFGKLQARAAVRDVGRVLGLPYGQVNKVAEIVPNNPAKPIP 470

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L +A+  + R RE R +D SV RL+EI+ ++EGLYRHASTHAAG+VIGDRPL +LVP+Y+
Sbjct: 471  LAEAVDAEPRLREMRDSDESVKRLIEIAMQVEGLYRHASTHAAGVVIGDRPLDELVPLYK 530

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D RSD+ +TQ++MK +E+AGL+KFDFLGL TLT++ ++L+FL   G  VD++ IP DD +
Sbjct: 531  DPRSDMLITQYSMKHVEQAGLVKFDFLGLTTLTIISRALNFLDGLGTPVDIAKIPLDDAK 590

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L+     G+FQ E+ G R  L  M+PD  ED+IA V+L RPGP+ NI  Y  RK+G
Sbjct: 591  TYEMLSRAEAGGVFQFETQGFRDVLRQMRPDRFEDLIAAVALNRPGPMANIPAYCARKHG 650

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E   S  P I  +L ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+ EM+ 
Sbjct: 651  -ESWESPDPSIHEILSETYGIMVYQEQVMQIAQKMAGYSLGAADLLRRAMGKKIRAEMEA 709

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q++ F+ GA   G ++  AV +F+L+AKFADYGFNKSHAAAYA++SYQTAW++ ++P  F
Sbjct: 710  QRKIFVEGAVARGTAEAKAVEVFDLMAKFADYGFNKSHAAAYALVSYQTAWLRANHPAAF 769

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-----YYSLAAI 842
            +AASM+L   N EK+    QDA +  I ++PP +N    DF V           Y+LAAI
Sbjct: 770  IAASMSLSQANHEKLAALKQDAVRIGIPVLPPDINASAADFTVERQADGTLAIRYALAAI 829

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            K VG    + ++ A A++PF  L DF +RVD + LN+  +E L  AGA D    +R ++ 
Sbjct: 830  KRVGAGAMQDVVRARANRPFADLADFAARVDPRALNKAQIEQLARAGAFDRIDPNRARVA 889

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
               + + + AQ   ++R +   N+F        + + L       +  R   E   +G++
Sbjct: 890  AGAELLVRRAQAEAESRASGQINLFGDAAA--PEPLPLPDVPDWPAFERLSFEAEAVGYH 947

Query: 963  FSGHPLDVYKPILRKMGIKG--YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             + HPLD Y  +LR++G+      E+ A      ++LA  VV ++++ TR GSR+ WV  
Sbjct: 948  LTAHPLDAYDTVLRRLGVVPSNLIEARAKAGIGRVKLAGAVVGRKERTTRTGSRMAWVML 1007

Query: 1021 SEPAKEYEANFF 1032
            S+ A  +E   F
Sbjct: 1008 SDQAGGFEVTLF 1019


>gi|270308619|ref|YP_003330677.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. VS]
 gi|270154511|gb|ACZ62349.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. VS]
          Length = 1170

 Score = 1029 bits (2661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1038 (36%), Positives = 576/1038 (55%), Gaps = 37/1038 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ +SLL+G   ++ ++ +       A+AITD   +     F ++A  AGI+P+
Sbjct: 2    FCHLHVHTEFSLLDGMCRISQLVARAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +  +   D    T   K        +VLL    +GY  LI+L SR ++        R
Sbjct: 62   LGSEFYLAYGDRTAKTAADK----NYYHLVLLAKNNKGYHNLIQLSSRSHIEG-FYYKPR 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L++  +EGL+ L+   SG + R    N    A +  L +KK F +  Y+ +QRH 
Sbjct: 117  IDKELLEKY-SEGLVCLSACPSGEVPRLILENRFNEAREAALWYKKTF-ENYYIEIQRHP 174

Query: 191  GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     S ++ +A   ++PLVATN++ +L +ED   HD+L+ +  + +VS + R ++ 
Sbjct: 175  MPDLEKINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKME 234

Query: 250  PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D+ YLK+  EM   + D+P+A+ENTV+IA  C+  L      LP           K  +
Sbjct: 235  GDYFYLKSPEEMAEAYQDIPDAIENTVKIAEMCNVSLDFGRLHLPEIDIP----ADKTPD 290

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L +    GL              +Q+   RL +EL+VI   +F+ YFL+  D I++ K
Sbjct: 291  EYLADLCYGGLPKFYPDA-------SQEILDRLKYELDVIKTTEFANYFLVTWDIIRFVK 343

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  +  G  RGS A S+  Y L IT +DP+++ L+FERFLN +R  MPD D+DF  DRR+
Sbjct: 344  EKGLYYGV-RGSAASSIVLYCLGITALDPIKYKLVFERFLNIERKEMPDIDMDFQDDRRE 402

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV  KYG + V+QIITFG+L AKAA+RD GRAL M Y+ VDR+ K+IP      + 
Sbjct: 403  EVIEYVVGKYGRDHVSQIITFGTLGAKAAVRDAGRALGMAYADVDRVAKVIPFSLHMTLD 462

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+ + +  ++    D  V  L++ ++K+EGL RHASTHAAG+VI   PL+  VP+ R 
Sbjct: 463  -KAMEESTELKDMFNQDSVVRNLVDAARKIEGLSRHASTHAAGVVISKDPLTDHVPLQRL 521

Query: 549  VRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
             +     L +TQ+ M+ I K GL+K DFLGL  L +L K+   + +     +D   IP D
Sbjct: 522  SKENNLGLVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQDIDPLAIPLD 581

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T+G+FQLE +GMR+ ++ ++P    DI A+V+LYRPGP++ I  +   
Sbjct: 582  DAKTFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIPRFIKS 641

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G E I   HP + P+L+ET GVI+YQEQV+ IAQ  SGY+L +AD+LR+AMGKKI   
Sbjct: 642  KHGLEPITYPHPALAPILEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKKIAAV 701

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQK  FI GA KNG +  IA  +F L+  FA Y FNK+HA +YA+I+YQTA++K +YP
Sbjct: 702  MQKQKANFIDGALKNGYTPEIAEEVFALVEPFAGYAFNKAHATSYALIAYQTAYLKANYP 761

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSL 839
            VE++ A +    D  EK+     +AR   I+++PP +N   V+F++     G  +I + L
Sbjct: 762  VEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGVNFEIEQNEDGVKKIRFGL 821

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            AA+K VG      I+    A+  + S+ED C R +   LN+RV+ESLV AGALD  G  R
Sbjct: 822  AAVKNVGVAAVEPIVAERKANGDYLSVEDLCRRAEGSSLNKRVMESLVKAGALDSLG-DR 880

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKH---ENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              LL +L NI   AQ  +K + +      ++F  +       + + +  V  +  + + E
Sbjct: 881  GTLLFNLPNILSLAQREQKLKDSNQTTMFDLFGQQSPMPMPSLEMAESPV-TTREKLQWE 939

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            + ++G + S HP   Y    +++      +    +    + +A MV S +   TR+G   
Sbjct: 940  KELVGIFISEHPFTPYASSAQEVTTALCGQIDEELHNQPVTVAGMVASVRVSATREGKPF 999

Query: 1016 GWVTFSEPAKEYEANFFP 1033
                  +     E   +P
Sbjct: 1000 VMAEIEDLVGRVEVAAWP 1017


>gi|121594197|ref|YP_986093.1| DNA polymerase III subunit alpha [Acidovorax sp. JS42]
 gi|120606277|gb|ABM42017.1| DNA polymerase III, alpha subunit [Acidovorax sp. JS42]
          Length = 1187

 Score = 1029 bits (2660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1057 (39%), Positives = 600/1057 (56%), Gaps = 59/1057 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   ++ ++   A D QPA+AITD NNLF A++F ++    G++PI
Sbjct: 10   FVHLRLHTEFSVVDGTTRIDEVVKAAAKDGQPALAITDLNNLFGAIKFYKEGRGKGVKPI 69

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++ +                  +VLLV    GY  L EL++R +  +  +    
Sbjct: 70   LGAEIYLEAE-----------AAGAPSRMVLLVQNRTGYLNLSELLARAWTRNIVRNQAL 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
                WLQE+G  GLI L G  +GP+ +A        A +  L    +F  R Y+ +QR  
Sbjct: 119  CTWEWLQELGD-GLIALAGAQAGPVGQALMKGDDAGAAQLALRLAGIFPHRFYLEVQRAG 177

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D    +  VQLA    LP+VAT+   F + +DYEAH+  + +A   +++   R  R 
Sbjct: 178  RPDDEAHVTAAVQLAARLALPVVATHPVQFATPDDYEAHEARVCIAEGEILANPRRVRRF 237

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K+ +EM ++F+D+P AL NTVE+A+RC+  L +  P LP F       +    E
Sbjct: 238  TREQYFKSSAEMEALFADVPSALANTVEVAKRCNVSLVLGKPQLPNFPIPGGMTM----E 293

Query: 309  NELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R+ +  GLE RL         +      Y++RL+FEL  I +M F GYFLIV DFIQ
Sbjct: 294  QYFRHASHEGLEERLLHLYPDTAERDRQRPRYQERLEFELGTILKMGFPGYFLIVGDFIQ 353

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAKKN  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 354  WAKKNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQA 413

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV++KYG E V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P  
Sbjct: 414  NRDRVIDYVKDKYGKEAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGQ 473

Query: 486  PVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
              +L               A+  +    E    +  V  ++E++QKLEG+ R+   HA G
Sbjct: 474  TYTLAYPPEPKKEGDKNNYALELEPILYERVRKEEDVRTIIEMAQKLEGMTRNIGMHAGG 533

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F+ Q
Sbjct: 534  VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMQ 593

Query: 592  RGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R    +      IP DD  TY L +   T  +FQ ES GM+  L+  +P  +ED+IAL +
Sbjct: 594  RHKGQENFAFENIPLDDAATYKLFSDGKTEAVFQFESRGMQGMLKEARPSRLEDLIALNA 653

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  + NRK+GKE +   HPL++P+L ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 654  LYRPGPMDLIPSFVNRKHGKEVVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLG 713

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM + +  F  GA++ GIS+  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 714  GADMLRRAMGKKKAEEMAEHRAIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAAA 773

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVD 827
            Y++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA + F +   PP +N     
Sbjct: 774  YSLLAYHTGWLKVHYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGMTFEPPDINRGNYR 833

Query: 828  FKVGDNR-IYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKK 876
            F+   ++ I Y L A+KG G      I+ A              PF SL DFC RVD  +
Sbjct: 834  FEPVTDKVIRYGLGAVKGTGQQAIEAIIAAREGQGVGPQGATRGPFKSLFDFCVRVDRTR 893

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK----G 932
            +N+R +E+L+ AGA D    +R  L+ SLD   ++A     N       +F        G
Sbjct: 894  VNKRTVEALIKAGAFDALQLNRAALVASLDRAFEFANAQIANAN--QGGLFDMMGDDAIG 951

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
            + + +  L          R   E+  +GFY SGH  D     +R+      +E V +   
Sbjct: 952  SSTQEPDLVDVMPWGIKERLMQEKTAVGFYLSGHLFDEVHQEVRRFVRTAIDELVDSRET 1011

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                +A +V   +    ++G R+      + +   EA
Sbjct: 1012 Q--VVAGIVSDYRVINGQRG-RLALFKLDDKSGVIEA 1045


>gi|134281214|ref|ZP_01767923.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 305]
 gi|226195389|ref|ZP_03790978.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pakistan
            9]
 gi|134247520|gb|EBA47605.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 305]
 gi|225932591|gb|EEH28589.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pakistan
            9]
          Length = 1234

 Score = 1029 bits (2660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1042 (39%), Positives = 605/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AG
Sbjct: 62   SDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAG 121

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 122  IKPIAGCDVWITNHDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 171

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ L
Sbjct: 172  GRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIEL 231

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R
Sbjct: 232  QRYGQPGGEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRR 291

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   + 
Sbjct: 292  QKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL- 350

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ RL         +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 351  ---DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVA 407

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 408  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 467

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 468  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 527

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 528  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 587

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 588  DFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 647

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 648  LAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 707

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 708  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 767

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 768  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 827

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+        
Sbjct: 828  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGK 887

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA
Sbjct: 888  RSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGA 947

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 948  FDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKR 1004

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 1005 RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1061

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1062 RGK-MVIALLDDGTGQCEVTVF 1082


>gi|169824700|ref|YP_001692311.1| DNA polymerase III subunit alpha [Finegoldia magna ATCC 29328]
 gi|167831505|dbj|BAG08421.1| DNA polymerase III alpha subunit [Finegoldia magna ATCC 29328]
          Length = 1161

 Score = 1029 bits (2660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1050 (35%), Positives = 587/1050 (55%), Gaps = 44/1050 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G   +  +LDK    Q  AIAITD  ++F  ++F ++     I+P
Sbjct: 4    TFTHLHVHTEYSLLDGFSPIEKLLDKAKDLQMKAIAITDHGSMFGTVKFYKECKKRNIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++    +D+     + K        +VLL    +GY  L+++VS  Y+        
Sbjct: 64   IIGCEIYTTNKDHKIKNPENK----FYNHLVLLAKNQQGYSNLMKIVSLGYVEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+  + L++  +EG+I L+    G +  +        A+      K ++G+  Y+ LQ H
Sbjct: 119  RVDKNTLRKY-SEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNH 177

Query: 190  RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +     + + ++A   ++ LV TN+  ++ +EDY+ H++L+ +     + + ++   
Sbjct: 178  SSREDMVVMENIPKIAKELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEDNKMSY 237

Query: 249  TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             P + +L++  +M  +F + PEA+ENT +IA  C+  L+     LP F   +        
Sbjct: 238  IPGEFFLRSEEQMKDLFKEYPEAIENTKKIAEMCNVELEFGHLHLPYFAIPDGF----TN 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + L+     GLE R A          Q+ ++R ++EL+VI +M +  YFLIV DFI++A
Sbjct: 294  SSYLKKLVFDGLEKRFAND-----ERLQEAKERCEYELSVIEKMGYVDYFLIVWDFIRFA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K  +IPVGPGRGS AGS+ +Y L ITDI+PL + L+FERFLNP+R+SMPD DIDFC +RR
Sbjct: 349  KSQDIPVGPGRGSAAGSIISYCLEITDINPLDYDLIFERFLNPERVSMPDIDIDFCYERR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI YV NKYG ++VAQI+TFG++ A+ A+RDVGR L M +  VD   K +PN     +
Sbjct: 409  EEVIDYVVNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLLNINI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +++     FR+A   +  V +L+++++++EG+ RH STHAAG+VI   P+ + VP+  
Sbjct: 469  D-KSLEISPEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYVPL-- 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
             +  D  +TQFNM  +E+ GL+K DFLGL+TLT++   + ++ + + + V+   +  +D 
Sbjct: 526  AINKDAVITQFNMTELEELGLLKMDFLGLRTLTVISDCIKYIKKNKNIDVNFEDMNENDP 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +   + T   TLGIFQ ES GMR  L+ ++P   +D+IA  +L+RPGP++ I  Y + K+
Sbjct: 586  KVLSMFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPMNEIPTYIHNKH 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +E +  + PL++ +LK T G I+YQEQVMQI Q ++G+SL EAD LRRAM KK  + M+
Sbjct: 646  NEEDVEYLSPLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKKMKVME 705

Query: 727  KQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              ++ F            I GA + G+ + +A  I++L+  FA Y FNKSH+AAY++++ 
Sbjct: 706  DGRKEFIFGKEDENGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAYSLVAM 765

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +TAW+K +YPVEFLAA ++  M N  +I  + ++AR+  I+I PP +N     F V DN 
Sbjct: 766  RTAWLKYYYPVEFLAALISSVMGNTSQISLYIEEARRLEIEISPPDINYSLDKFDVKDNS 825

Query: 835  IYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890
            I Y L AIK VGT      I+  + +  F S  DF  R+   D   +N+R +ESL+ AGA
Sbjct: 826  IIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESLIKAGA 885

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSS 949
                G +R  L+    +I    Q   KN      N+F   E    +D+    +    + S
Sbjct: 886  FSSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNEENDRDDFTRREEFDKS 945

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------RGNNIRLAAMVVS 1003
                 E+ VLG Y S HPL  Y  I+ +       +            G  +++  ++ S
Sbjct: 946  ELLRMEKEVLGIYLSDHPLRAYSSIIGQYSNFSTGDLEDDAYNEKNFDGKRVKVVGIIES 1005

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +K T+    + +V F +     E   FP
Sbjct: 1006 INKKFTKNQKIMEFVKFEDLYGTMELIVFP 1035


>gi|317121217|ref|YP_004101220.1| DNA polymerase III catalytic subunit, DnaE type [Thermaerobacter
           marianensis DSM 12885]
 gi|315591197|gb|ADU50493.1| DNA polymerase III catalytic subunit, DnaE type [Thermaerobacter
           marianensis DSM 12885]
          Length = 1245

 Score = 1029 bits (2660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/951 (39%), Positives = 561/951 (58%), Gaps = 50/951 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FVHL VHS YSLL+GA  +  +  + A    PA+A+TD   ++ A++F +     GI+P
Sbjct: 3   PFVHLHVHSEYSLLDGAARVGELAARAAELGMPALALTDHGVMYGAIDFYKACKKHGIKP 62

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIGC+L +  +       +          ++ L     GY+ LI++VSR Y  +      
Sbjct: 63  IIGCELYLARRTRHDREPK---VDDQSYHLLALAQNETGYRNLIKIVSRAY-AEGFYYKP 118

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           R     L E  +EGLI+ +G     I R       + A K +  + ++FGDR Y  +Q H
Sbjct: 119 RADKELLAE-HSEGLIVTSGCIGSEIPRLLLEGREEEALKAVRWYLEVFGDRFYFEIQDH 177

Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              +  R  +++++LA   ++P+VATN+  +L ++D  AH+VL+ +     +    R R 
Sbjct: 178 GIPEERRAYARILELARRFDVPVVATNDVHYLHKDDAAAHEVLLCIQTGKTLDDPHRMRF 237

Query: 249 TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              + YLK+  EM ++F D+PEAL NTV++A RC    +    +LP +   E  D     
Sbjct: 238 DGAEFYLKSPEEMAALFRDVPEALANTVQLAERCQLEFEFGRFLLPHYEVPEGHDA---- 293

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + LR      L  R             +   RL+ EL VI RM +  YFLIV DF+ +A
Sbjct: 294 ASYLRYLCETKLPERYPDAGS-------EVWDRLNHELAVITRMGYPAYFLIVWDFVDYA 346

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           ++N I VGPGRGS AGS+ AY L ITDIDPLR++LLFERFLNP+R++MPD DIDF   RR
Sbjct: 347 RRNGIAVGPGRGSAAGSLVAYVLGITDIDPLRYNLLFERFLNPERVTMPDIDIDFDDHRR 406

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           DEVI YV  KYG +RVAQIITFG + A+A +RDVGR + +PY +VD++ K++P      +
Sbjct: 407 DEVIDYVVRKYGRDRVAQIITFGRMLARAVIRDVGRVMGLPYGEVDKIAKMVPAQLGITL 466

Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             QA+      ++A    P V +L+++++KLEG+ RHAS HAAG+VIG  PL + VP+ R
Sbjct: 467 D-QALEASPELKQAYEQQPVVRQLVDMARKLEGMPRHASVHAAGVVIGRDPLMEHVPLQR 525

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS-------- 599
            ++    VTQF M  +E+ GL+K DFLGL+TL ++Q++   +   G +  L+        
Sbjct: 526 -MQDGSTVTQFPMTTLEELGLLKMDFLGLRTLHVIQETEAIINTTGARDVLAGESGGGGA 584

Query: 600 ------------LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
                        IP DD  T+  ++   T  +FQ+ESSG  Q L  ++P  IED+IA V
Sbjct: 585 EEPGAAPRFRVRDIPLDDPATFEAMSRGDTAAMFQVESSGFTQMLRSLRPSSIEDLIAAV 644

Query: 648 SLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
           +L+RPGP+ + +V  +  RK+G+  +   HP ++P+LKET G I+YQEQVMQIA +++G+
Sbjct: 645 ALFRPGPLGSGMVDDFIKRKHGQVPVEYPHPWLEPILKETYGTIVYQEQVMQIASVMAGF 704

Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
           +L EAD+LRRAMGKK  EEM KQ+E+F++GA   G+ + +A +IF+L+  FA YGFNKSH
Sbjct: 705 TLGEADLLRRAMGKKKPEEMQKQREKFLAGAEAKGVDRKLAEHIFDLMEYFAGYGFNKSH 764

Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
           +AAY  ++Y TA++KTHYP  ++AA+++  M N +++ ++  + R+  I ++PP +N   
Sbjct: 765 SAAYGYLAYVTAYLKTHYPAPYMAATLSSVMSNSDRVAEYIGECRRLGIPVLPPDINESQ 824

Query: 826 VDFKV-------GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKL 877
             F V       G   I + LAA+K VG      I+ A     PF SL+DFC RVD +++
Sbjct: 825 ALFTVVPDPRAPGGQAIRFGLAAVKNVGFGAIESIVSAREQGGPFRSLDDFCRRVDLRQV 884

Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
           NRR LESL+ AGA D  G+ R +LL  L+ + + AQ  +K R     ++  
Sbjct: 885 NRRALESLIKAGAFDSLGHPRARLLAGLEEVMERAQRWQKERETGQVSLLD 935



 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 38/99 (38%)

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             +   L        + +   E+ VLG Y SGHPL  Y+  L +       +      G  
Sbjct: 1025 DEATELPPVEEWPPNRKLAMEKEVLGLYLSGHPLAHYQRELARRVTATTRQLAEREDGAR 1084

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +++  +V   ++  TR G  + +V   +     E   FP
Sbjct: 1085 VQVGGLVQGVRRITTRSGELMAFVQLEDLEGSVEVVVFP 1123


>gi|126440764|ref|YP_001058246.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 668]
 gi|126220257|gb|ABN83763.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 668]
          Length = 1274

 Score = 1029 bits (2660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1042 (39%), Positives = 605/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AG
Sbjct: 102  SDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAG 161

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 162  IKPIAGCDVWITNHDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 211

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ L
Sbjct: 212  GRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIEL 271

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R
Sbjct: 272  QRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRR 331

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   + 
Sbjct: 332  QKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL- 390

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ RL         +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 391  ---DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVA 447

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 448  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 507

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 508  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 567

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 568  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 627

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 628  DFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 687

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 688  LAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 747

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 748  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 807

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 808  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 867

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+        
Sbjct: 868  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGK 927

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA
Sbjct: 928  RSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGA 987

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 988  FDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKR 1044

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 1045 RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1101

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1102 RGK-MVIALLDDGTGQCEVTVF 1122


>gi|126453191|ref|YP_001065485.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 1106a]
 gi|242315814|ref|ZP_04814830.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106b]
 gi|254298453|ref|ZP_04965905.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 406e]
 gi|126226833|gb|ABN90373.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106a]
 gi|157808232|gb|EDO85402.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 406e]
 gi|242139053|gb|EES25455.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106b]
          Length = 1174

 Score = 1029 bits (2660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1042 (39%), Positives = 605/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AG
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNHDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ L
Sbjct: 112  GRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGGEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   + 
Sbjct: 232  QKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ RL         +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA
Sbjct: 828  RSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 888  FDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MVIALLDDGTGQCEVTVF 1022


>gi|152980633|ref|YP_001352224.1| DNA polymerase III alpha subunit [Janthinobacterium sp. Marseille]
 gi|151280710|gb|ABR89120.1| DNA polymerase III alpha subunit [Janthinobacterium sp. Marseille]
          Length = 1152

 Score = 1029 bits (2660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1044 (38%), Positives = 606/1044 (58%), Gaps = 39/1044 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SP F+HL++HS YS+++G + +++++   AAD QPA+AI+D  NLF  ++F ++A + GI
Sbjct: 3    SPQFIHLRLHSEYSIVDGLIRIDDVIQAAAADMQPALAISDLANLFGMVKFYKEARSNGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+GC + I   ++                ++LLV   +GY +L EL+S+ +L +  + 
Sbjct: 63   KPIVGCDVWISNDND----------RDKPSRLLLLVKNKDGYLQLCELLSKAWLTNLHRG 112

Query: 128  SVRICLSWLQEI---GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
               I   WL+++   G  GLI+L+G   G +  A    +   AE+    + +LF    Y+
Sbjct: 113  RAEIRPEWLEQVAADGKNGLIVLSGAHFGDVGIAIDNGNLGAAERCAQRWAELFPGHFYI 172

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR    +      Q   LA    LPLVAT+   FL  E++ AH+    ++   +++  
Sbjct: 173  EVQRAGQPNMDGHVRQASVLAAKLGLPLVATHPVQFLGLEEFTAHEARTCISEGEILANP 232

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R       K ++EM  +F+D+P AL+N+VEIA+RC+ +L++  P LP F   +   
Sbjct: 233  RRIKRFNEQQRFKTQAEMAELFADMPNALQNSVEIAKRCNLVLELGKPKLPNFPTPDGSS 292

Query: 303  IQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            I    +  L  +A  GL+ R   L     A+  H + Y+ RL FE + I +M F GYFLI
Sbjct: 293  I----DEFLVKEAQRGLDQRMEHLYPDPAAREKHRERYQARLKFETDTIIKMGFPGYFLI 348

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD
Sbjct: 349  VADFIKWAKNNGVPVGPGRGSGAGSLVAYSLLITDLDPLQYNLLFERFLNPERVSMPDFD 408

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ+ RD VI+YV+++YG + V+QI TFG++ AK A+RDVGR L   Y+  D + KLI
Sbjct: 409  IDFCQEGRDRVIQYVKDQYGKDAVSQIATFGTMAAKGAVRDVGRVLDFGYNFCDGISKLI 468

Query: 480  PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++  AI ++    E    +  V +LL+++Q++EG+ R+   HA G++I    
Sbjct: 469  PFKPGKLVTISDAIKEEPLLAERLENEEEVKQLLDLAQQVEGIARNIGMHAGGVLIAPGK 528

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-- 596
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L +++ ++      +  
Sbjct: 529  LTDFCPLYTQGGDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIKDLDPAMAD 588

Query: 597  -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L  +P +D  +Y LLT   T+ +FQLES GM+  L+  +PD  EDIIALV+LYRPGP+
Sbjct: 589  FALEKLPLNDRPSYELLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPM 648

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G E+     P  + +L ET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 649  DLIPDFCRRKHG-ERFEYPDPRTESILSETYGIMVYQEQVMQMAQVIGGYSLGGADLLRR 707

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM + +E F +GASKN +S   A  IF+L+ KFA YGFNKSHAAAYA++SY 
Sbjct: 708  AMGKKKAEEMAEHRELFRAGASKNDLSAEKADEIFDLMEKFAGYGFNKSHAAAYALLSYH 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVG--- 831
            TA++K H+P  F+AA+++L MD+ +KIK   +DA     + ++PP +N     F      
Sbjct: 768  TAYLKAHHPAAFMAANLSLAMDDTDKIKILVEDAIDICGLSLLPPDINQSDYRFTPVGVP 827

Query: 832  ---DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                 +I Y L A+KG G      ++EA  ++PF  L DF  RVD +++NRR ++SL+ A
Sbjct: 828  GKKATQIRYGLGAVKGSGKGAIDAVIEARKERPFTDLFDFAKRVDKRQINRRTIDSLIRA 887

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA DCF   R  LL S+          +        ++F  +           K S  + 
Sbjct: 888  GAFDCFDVDRAILLASV--AFAMECAEQAEAAANQVSLFGGDDSDLETPPEYVKVSPWSD 945

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              +   E+  LGFY SGH  + Y    R+           +       +A ++   + + 
Sbjct: 946  KQKLTEEKAALGFYLSGHLFNAYADEARRFARAKLSSLEPSREPR--TIAGVISGLRTQM 1003

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G RI  VT  + +   +   +
Sbjct: 1004 TQRG-RITIVTLDDGSATVDVTVY 1026


>gi|251798458|ref|YP_003013189.1| DNA polymerase III subunit alpha [Paenibacillus sp. JDR-2]
 gi|247546084|gb|ACT03103.1| DNA polymerase III, alpha subunit [Paenibacillus sp. JDR-2]
          Length = 1220

 Score = 1029 bits (2660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1029 (38%), Positives = 600/1029 (58%), Gaps = 16/1029 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL+GA  + +++ + A     A+A+TD   ++ A+ F +   A GI+P
Sbjct: 7    SFVHLHVHSEYSLLDGAARIRDLVARAAEQGMKALALTDHGVMYGAIPFYRACLARGIKP 66

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++        +   +   P   +  ++LL     GY+ L++LVS  +L        
Sbjct: 67   IIGCEMYFTAGSRFEKGTRKDNP---IYHLILLAKNETGYRNLMKLVSIGHLEG-FHYKP 122

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L E  +EGL+ L+    G I +    +  + A    + +K++FGD  Y+ LQ H
Sbjct: 123  RIDPEVL-EAHSEGLVCLSSCLHGEISQHLLHDRREEALTAAMRYKRIFGDDFYLELQDH 181

Query: 190  RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D+ + +  +++LA    + L ATN+  +L+ ED    DVL+ +     V   DR ++
Sbjct: 182  GMLDQKKVAAAMIELARETGIKLTATNDVHYLTPEDAAVQDVLICIGTGKSVDDTDRMKM 241

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  Y+K+  EM  +F  +PEA+ +T EIA +CS  L      LP F            
Sbjct: 242  GTDQLYMKSGEEMELLFRHVPEAIRHTAEIADKCSLELTFGRAALPVFRPVPG---GMTS 298

Query: 308  ENELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               L     +GL  R A          + +    RL +EL+VI  M FS YFLIV DF++
Sbjct: 299  TAYLAELCRSGLASRYAGLPQWSEDPAYREQAEARLAYELSVIENMGFSDYFLIVWDFVR 358

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A +  I  GPGRGS AGS+ AY L ITD+DPL++ LLFERFLNP+R++MPD DIDF  +
Sbjct: 359  FAHEQGIRTGPGRGSSAGSLVAYVLRITDVDPLKYKLLFERFLNPERITMPDIDIDFNDE 418

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI YV  KYG E VAQIITFG++ AKAA+RDVGRA+ +P+++VDR  K+IPN    
Sbjct: 419  RRDEVIAYVSAKYGDEHVAQIITFGTMAAKAAVRDVGRAMNVPFAEVDRAAKMIPNQLHI 478

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+      REA    P  D +++++ K+EG+ RHASTHAAG+VI   PL+  VP+
Sbjct: 479  TLE-EALRISEGLREACQRQPRTDAMIKMALKVEGMPRHASTHAAGVVISGGPLTDYVPL 537

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604
                     +TQ++M+ +E  GL+K DFLGL+TL+++++SL ++    G ++D   +P +
Sbjct: 538  Q-AGSERTALTQYSMEHLEAVGLLKMDFLGLRTLSIVERSLAWVKGLYGKEIDFRKVPDN 596

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY +L    T+GIFQLESSG+R+ L+ M+P   EDI+++++LYRPGP++ I  Y   
Sbjct: 597  DPDTYAMLGRGETMGIFQLESSGVRRVLKEMKPSEFEDIVSVLALYRPGPMEFIPNYIQG 656

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G   +   HP ++P+L +T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E 
Sbjct: 657  KHGLAPVKYPHPSLEPILSDTYGIIVYQEQIMQIASAMAGFSLGEADLLRRAVSKKKREV 716

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D+Q+  F+ G+   G +   A  +++++ +FADYGF ++HAAAY V+++QTAW+K HYP
Sbjct: 717  LDEQRAHFVKGSVSEGYTSEDANLVYDMIVRFADYGFPRAHAAAYGVLAFQTAWLKAHYP 776

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            + F+A+ +     N  K  ++  + R+  I+++PP VN   V F   +  + + LAAIK 
Sbjct: 777  IPFMASMLASVTGNQRKTAEYVDECRRMGIEVLPPDVNESGVTFTPVEGAVRFGLAAIKN 836

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VGT     I +   ++PFDSL D C RVD + +N+RVLESL+ AGAL+     R Q L +
Sbjct: 837  VGTQAIEAIEKERRERPFDSLLDLCRRVDLRVVNKRVLESLIQAGALESLPGHRAQQLAA 896

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L+   + A    K R      +F  ++    D + L      ++  + E E+ +LG Y S
Sbjct: 897  LEETVEAALKWRKEREELQIELFGFDEVQNWD-VELPDIRPYSTGEQLELERELLGLYLS 955

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            GHPLD  +  L  +G+  + E      G    + A VVS +    +KG+ +G++   +  
Sbjct: 956  GHPLDAVEEQLEPLGLDRFIELGEAAEGAAAFIGARVVSLKPFTNKKGNAMGFIEIEDRV 1015

Query: 1025 KEYEANFFP 1033
               E   FP
Sbjct: 1016 MRAEGVVFP 1024


>gi|217420148|ref|ZP_03451654.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 576]
 gi|217397452|gb|EEC37468.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 576]
          Length = 1234

 Score = 1028 bits (2659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1042 (39%), Positives = 605/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AG
Sbjct: 62   SDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAG 121

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 122  IKPIAGCDVWITNHDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 171

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ L
Sbjct: 172  GRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIEL 231

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R
Sbjct: 232  QRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRR 291

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   + 
Sbjct: 292  QKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL- 350

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ RL         +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 351  ---DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVA 407

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 408  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 467

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 468  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 527

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 528  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 587

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 588  DFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 647

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 648  LAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 707

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 708  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 767

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 768  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 827

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+        
Sbjct: 828  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGK 887

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA
Sbjct: 888  RSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGA 947

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 948  FDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKR 1004

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 1005 RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1061

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1062 RGK-MVIALLDDGTGQCEVTVF 1082


>gi|53718752|ref|YP_107738.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei K96243]
 gi|237811495|ref|YP_002895946.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei MSHR346]
 gi|254181269|ref|ZP_04887866.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1655]
 gi|254195140|ref|ZP_04901569.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei S13]
 gi|254261192|ref|ZP_04952246.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1710a]
 gi|52209166|emb|CAH35110.1| putative DNA polymerase III alpha subunit [Burkholderia pseudomallei
            K96243]
 gi|169651888|gb|EDS84581.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei S13]
 gi|184211807|gb|EDU08850.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1655]
 gi|237506197|gb|ACQ98515.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei MSHR346]
 gi|254219881|gb|EET09265.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1710a]
          Length = 1174

 Score = 1028 bits (2659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1042 (39%), Positives = 605/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AG
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNHDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ L
Sbjct: 112  GRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   + 
Sbjct: 232  QKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ RL         +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA
Sbjct: 828  RSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 888  FDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MVIALLDDGTGQCEVTVF 1022


>gi|313201481|ref|YP_004040139.1| DNA polymerase III subunit alpha [Methylovorus sp. MP688]
 gi|312440797|gb|ADQ84903.1| DNA polymerase III, alpha subunit [Methylovorus sp. MP688]
          Length = 1133

 Score = 1028 bits (2659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1022 (40%), Positives = 613/1022 (59%), Gaps = 34/1022 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G + + + +   AAD+ PA+A+TD +NLF A++F + A   G++P++GC L ++ + 
Sbjct: 1    MVDGTVRIGDYVKAAAADRMPALALTDLSNLFGAVKFYKSARGKGLKPVLGCDLWLENET 60

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N                ++LL  T  GY +L EL+SR YL +Q +    I   WL E G 
Sbjct: 61   N----------RDQPYRLLLLCQTHAGYLKLCELLSRAYLENQHRGRAEIKRQWLVEAGG 110

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQV 200
            EGLIML+G  +G + +A    + Q A      +  LF +R Y+ LQR       +  S+ 
Sbjct: 111  EGLIMLSGAMAGDVGQAILQGNQQAALALAQQWAALFPNRFYIELQRAGHAQQEFYISRA 170

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            + LA   +LP+VAT+   F+  +D++AH+  + +A   V++   RP   TP+ + K ++E
Sbjct: 171  LALAGELDLPVVATHPVQFMQADDFKAHEARVCIAEGYVLADNRRPKHFTPEQFFKTQAE 230

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M ++F+D+P+AL N+VEIA+RC+  L +    LP+F     + +    +  L  +A  GL
Sbjct: 231  MATLFADVPQALANSVEIAKRCNLTLTLGKNYLPQFPTPNGESL----DEYLVVQAKLGL 286

Query: 320  EVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +      Y  RL+FE N+I +M F GYFLIVADFI WAK N +PVGP
Sbjct: 287  EKRLQVLYPDEAVRDAKRPVYLTRLEFETNIIIQMGFPGYFLIVADFINWAKNNGVPVGP 346

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGSV AY+L ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ+ RD VI YV++
Sbjct: 347  GRGSGAGSVVAYSLGITDLDPLQYALLFERFLNPERVSMPDFDIDFCQEGRDRVIDYVKH 406

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            KYG   V+QI TFG++ AKA +RDVGR L +P++ VD + KLIPN+    +S  A+  + 
Sbjct: 407  KYGLASVSQIATFGTMAAKAVIRDVGRVLDLPFNFVDGIAKLIPNELGITLS-DALEKEP 465

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            + +E R  +  V+ LLE++ +LEGL R+   HA G++I    +S   P+Y     +  V+
Sbjct: 466  QLKERREQEEEVNELLELALRLEGLTRNIGMHAGGVLISPGKISDFSPIYCQQNGESLVS 525

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKVDLSLIPFDDHETYHL 611
            Q++   +E  GL+KFDFLGL+TLT+L  +L+        +    +D   +P +D  TY L
Sbjct: 526  QYDKDDVEAVGLVKFDFLGLRTLTILAMALENANVQRALKELPPLDFETLPINDKPTYQL 585

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            L +  T  +FQLES GM+  L+  +PDC EDIIALV+LYRPGP+D I  +  RK+G++++
Sbjct: 586  LKSANTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYRPGPMDLIPDFCRRKHGQQRV 645

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
               HP  +P+LKET G+++YQEQVMQIAQ+++GYSL  AD+LRRAMGKK KEEMD Q+  
Sbjct: 646  EYPHPATEPILKETYGIMVYQEQVMQIAQVVAGYSLGGADLLRRAMGKKKKEEMDAQRAV 705

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            F+ GA KNG  +  A  +F+L+ KFA YGFNKSHAAAYA+++Y TA++K HYP  FLAA+
Sbjct: 706  FVEGAVKNGTPEKQAAELFDLMEKFASYGFNKSHAAAYALVAYHTAYLKAHYPAAFLAAT 765

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTA 850
            M+ +M+N + +  F  D     ++++ P +N     FK + D ++ Y L A+KG G    
Sbjct: 766  MSADMNNTDSVHIFYDDCAANGVEVLAPDINQSEFRFKPISDKQVLYGLGAVKGTGWAAI 825

Query: 851  RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              I+ A  A+ PF  L DFC R+D +K+NRRV+ESL+ AGA D    +R  LL  +    
Sbjct: 826  EVILAAREAEGPFKDLFDFCRRLDLRKVNRRVIESLIRAGAFDKLEPNRAALLAGVSLAI 885

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
              A+       +   ++F     + +   TL K +  +   + + E+  LGFYFSGHP +
Sbjct: 886  SAAEQS--GAASGQNSLFGEMSDSVAH--TLPKVNAWSEQEKLQQEKSALGFYFSGHPYE 941

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
             YK  L               +     LA +V+  + + T++G  +  VT  +     E 
Sbjct: 942  GYKRELATFVRTTLGNL--KPQDQPQLLAGVVMGIRIRMTQRGK-MAIVTLDDATSRIEI 998

Query: 1030 NF 1031
              
Sbjct: 999  VV 1000


>gi|167893446|ref|ZP_02480848.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 7894]
          Length = 1105

 Score = 1028 bits (2658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1042 (39%), Positives = 605/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AG
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNHDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ L
Sbjct: 112  GRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGGEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   + 
Sbjct: 232  QKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ RL         +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA
Sbjct: 828  RSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 888  FDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MVIALLDDGTGQCEVTVF 1022


>gi|326404871|ref|YP_004284953.1| DNA polymerase III alpha subunit [Acidiphilium multivorum AIU301]
 gi|325051733|dbj|BAJ82071.1| DNA polymerase III alpha subunit [Acidiphilium multivorum AIU301]
          Length = 1139

 Score = 1028 bits (2658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/1032 (46%), Positives = 658/1032 (63%), Gaps = 26/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VHS+YSL EGA+  + I      +  PA+AITDT+NLF ++EFSQ     G+QP
Sbjct: 5    DFVHLRVHSAYSLSEGAIKPDKIATLARDNAMPAVAITDTSNLFGSIEFSQACMGKGVQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GCQ+ +   D          P      +VLL   A G+  L +L SR +L  +     
Sbjct: 65   IVGCQIGLARTD---------LPRLPPDPLVLLAKDATGFANLSKLSSRSFLDTEPGLRP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            +I L  L++   EGL +LTGG  GP+ R         A + L    + F DRL V L+RH
Sbjct: 116  QISLDTLRD-HHEGLFLLTGGRFGPVGRLLGDGQRPEAARLLAALAETFPDRLAVELERH 174

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +R  E  ++ LA    LPLVATN   F +E  +EAHD L+ +A   V+S+ +R RV
Sbjct: 175  DLPTERAVEPGLITLADEAGLPLVATNECFFATETMHEAHDALLCIAEGRVLSEAERRRV 234

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            TP H+ K  +EM   F+DLP+A +NT+ IARRC+       P+LP  I  +  D    E 
Sbjct: 235  TPHHWFKPAAEMRRRFADLPDACDNTLAIARRCAIAAPTRKPLLP--ICPKVRD-GATEA 291

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR  A  GL +RLA         A+ YR+RL  EL +I +M F GYFLIVADFIQWAK
Sbjct: 292  ETLRAMAEEGLALRLAAMNADAATAAK-YRERLALELGIIEQMGFPGYFLIVADFIQWAK 350

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               IPVGPGRGSGAGS+ A+AL ITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQ+RRD
Sbjct: 351  SQGIPVGPGRGSGAGSLAAWALLITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQERRD 410

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV+ +YG +RVAQIITFG LQA+AA+RDVGR L +PY QV+++ +++PN+PA P+ 
Sbjct: 411  EVIAYVRREYGADRVAQIITFGKLQARAAVRDVGRVLGLPYGQVNKVAEIVPNNPAKPIP 470

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L +A+  + R RE R +D SV RL+EI+ ++EGLYRHASTHAAG+VIGDRPL++LVP+Y+
Sbjct: 471  LAEAVDAEPRLREMRDSDESVKRLIEIAMQVEGLYRHASTHAAGVVIGDRPLNELVPLYK 530

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D RSD+ +TQ++MK +E+AGL+KFDFLGL TLT++ ++L+FL   G  VD++ IP DD +
Sbjct: 531  DPRSDMLITQYSMKHVEQAGLVKFDFLGLTTLTIISRALNFLDGLGTPVDIAKIPLDDAK 590

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L+     G+FQ E+ G R  L  M+PD  ED+IA V+L RPGP+ NI  Y  RK+G
Sbjct: 591  TYEMLSRAEAGGVFQFETQGFRDVLRQMRPDRFEDLIAAVALNRPGPMANIPAYCARKHG 650

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E   S  P I  +L ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+ EM+ 
Sbjct: 651  -ESWESPDPSIHEILSETYGIMVYQEQVMQIAQKMAGYSLGAADLLRRAMGKKIRAEMEA 709

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q++ F+ GA   G ++  AV +F+L+AKFADYGFNKSHAAAYA++SYQTAW++ ++P  F
Sbjct: 710  QRKIFVEGAVARGTAEAKAVEVFDLMAKFADYGFNKSHAAAYALVSYQTAWLRANHPAAF 769

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-----YYSLAAI 842
            +AASM+L   N EK+    QDA +  I ++PP +N    DF V           Y+LAAI
Sbjct: 770  IAASMSLSQANHEKLAALKQDAVRIGIPVLPPDINASAADFTVERQADGTLAIRYALAAI 829

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            K VG    + ++ A A++PF  L DF +RVD + LN+  +E L  AGA D    +R ++ 
Sbjct: 830  KRVGAGAMQDVVRARANRPFADLADFAARVDPRALNKAQIEQLARAGAFDRIDPNRARVA 889

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
               + + + AQ   ++R +   N+F        + + L       +  R   E   +G++
Sbjct: 890  AGAELLVRRAQAEAESRASGQINLFGDAAA--PEPLPLPDVPDWPAFERLSFEAEAVGYH 947

Query: 963  FSGHPLDVYKPILRKMGIKG--YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             + HPLD Y  +LR++G+      E+ A      ++LA  VV ++++ TR GSR+ WV  
Sbjct: 948  LTAHPLDAYDTVLRRLGVVPSNLIEARAKAGIGRVKLAGAVVGRKERTTRTGSRMAWVML 1007

Query: 1021 SEPAKEYEANFF 1032
            S+ A  +E   F
Sbjct: 1008 SDQAGGFEVTLF 1019


>gi|167562082|ref|ZP_02354998.1| DNA polymerase III subunit alpha [Burkholderia oklahomensis EO147]
          Length = 1105

 Score = 1028 bits (2658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1042 (39%), Positives = 602/1042 (57%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F ++A  AG
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARDAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNHDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    EGL+ L+G   G I  A    +   A +    + K F    Y+ L
Sbjct: 112  GRAELDASWLEGEFAEGLLALSGAQQGDIGLALAAGNEAAARRHAERWAKTFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   F++ +D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQFMTADDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T D + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LP F   +   + 
Sbjct: 232  QKRFTTDQFFRTQDDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RL         +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSKEGLEKRLVQLYPDEAEREAQRDTYCQRLDFECGTIKKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPASFQMLKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+      ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVEYPDMRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG++   A  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHRELFREGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     + ++ P +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLSPDINQSHYRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ AGA
Sbjct: 828  RSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            LD    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 888  LDSLHANRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGEPAHQHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKSALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MVIALLDDGTGQCEITVF 1022


>gi|167844904|ref|ZP_02470412.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei B7210]
          Length = 1109

 Score = 1028 bits (2658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1042 (39%), Positives = 605/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AG
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNHDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ L
Sbjct: 112  GRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   + 
Sbjct: 232  QKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ RL         +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA
Sbjct: 828  RSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 888  FDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MVIALLDDGTGQCEVTVF 1022


>gi|167901900|ref|ZP_02489105.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei NCTC
            13177]
 gi|167910136|ref|ZP_02497227.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 112]
          Length = 1104

 Score = 1028 bits (2658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1042 (39%), Positives = 605/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AG
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNHDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ L
Sbjct: 112  GRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   + 
Sbjct: 232  QKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ RL         +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA
Sbjct: 828  RSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 888  FDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MVIALLDDGTGQCEVTVF 1022


>gi|167814912|ref|ZP_02446592.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 91]
          Length = 1107

 Score = 1028 bits (2658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1042 (39%), Positives = 605/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AG
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNHDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ L
Sbjct: 112  GRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   + 
Sbjct: 232  QKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ RL         +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA
Sbjct: 828  RSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 888  FDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MVIALLDDGTGQCEVTVF 1022


>gi|167823354|ref|ZP_02454825.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 9]
          Length = 1102

 Score = 1028 bits (2657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1042 (39%), Positives = 605/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AG
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNHDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ L
Sbjct: 112  GRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGGEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   + 
Sbjct: 232  QKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ RL         +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA
Sbjct: 828  RSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 888  FDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MVIALLDDGTGQCEVTVF 1022


>gi|167718737|ref|ZP_02401973.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei DM98]
          Length = 1103

 Score = 1028 bits (2657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1042 (39%), Positives = 605/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AG
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNHDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ L
Sbjct: 112  GRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   + 
Sbjct: 232  QKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ RL         +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA
Sbjct: 828  RSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 888  FDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MVIALLDDGTGQCEVTVF 1022


>gi|313680738|ref|YP_004058477.1| DNA polymerase III subunit alpha [Oceanithermus profundus DSM 14977]
 gi|313153453|gb|ADR37304.1| DNA polymerase III, alpha subunit [Oceanithermus profundus DSM 14977]
          Length = 1222

 Score = 1028 bits (2657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1090 (38%), Positives = 601/1090 (55%), Gaps = 81/1090 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAAD--QQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            F HL  H+ +SLL+GA  L+ ++  +       PA+A TD  NLF A++F +KA AAG++
Sbjct: 3    FAHLHQHTQFSLLDGAAKLDELIQWVKQTTPDDPALATTDHGNLFGAVQFYKKATAAGVK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG +  +  +     T + K        + LL    +GYQ L+ L SR YL       
Sbjct: 63   PIIGYEAYVAAESRFDRTMR-KGLDGGYFHLTLLAKDFKGYQNLVRLASRAYLEG-FYMK 120

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L+E   EG+I L+G     I +    +   +AE+RL  + ++FGDR ++ +Q 
Sbjct: 121  PRIDREILRE-HNEGIIALSGCLGAEIPQFILADREDLAEERLNEYLEIFGDRYFIEIQD 179

Query: 189  HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ + + V+ + A  + L +VATN+  ++ +ED  AH+VL+A+     ++ +DR +
Sbjct: 180  HGLEEQKKVNAVLREFAQKYGLGMVATNDGHYVKQEDARAHEVLLAIQSKATLADEDRWK 239

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHA---PILPRFIEKECDD 302
               D +  K   EM     D P+ +  N+ EIA  C+  L V       +PR+   E  D
Sbjct: 240  FPCDEFYVKTPEEMKKALPDWPDEIFSNSAEIAAMCNVELPVGDKMTYRIPRYPLPEGRD 299

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---------------------------- 334
                E   LR     GL  R         Y A                            
Sbjct: 300  ----ENQYLRELTFKGLLERYPDRVNPALYRAYLTRLEIEPAEDEEDLILQLARLDRKAR 355

Query: 335  ------QDYR-----------QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
                   D R            R ++EL  I +M F GY LIV D+I WAK + I VGPG
Sbjct: 356  ERVDFFPDVRNVQEWDGWATLARAEYELGTIEQMGFPGYLLIVQDYINWAKNHGISVGPG 415

Query: 378  RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
            RGS AGS+ AYA+ IT+IDPL F LLFERFLNP R+SMPD D DF   RRDEVI YV+ +
Sbjct: 416  RGSAAGSLVAYAIRITNIDPLEFGLLFERFLNPARVSMPDIDTDFSDVRRDEVIDYVRER 475

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDS 496
            YG ++VAQI TFG+L +KAAL+DV R   + Y + ++L KLIP     P+ L +A+    
Sbjct: 476  YGEDKVAQIATFGTLASKAALKDVARVYGLEYKRAEQLAKLIPVQFGKPLPLARAMEQIP 535

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
              + A   D +V  +LEI+Q+LEGL RHAS HAAG+VI D PL+ LVP+ RD R D  VT
Sbjct: 536  ELKAAMRQDETVREVLEIAQRLEGLNRHASVHAAGVVIADEPLTNLVPLMRDTRGDGVVT 595

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTK 615
            Q++M  +E  GL+K DFLGL+TL+ L ++   + +   V++D   +P DD +T+ +L   
Sbjct: 596  QYDMGSVEALGLLKMDFLGLRTLSFLDEAKRIVKESAGVELDYDNLPLDDPKTFEMLGRG 655

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-- 673
             T G+FQLE +GM   ++  +P+ + DIIA+VSLYRPGP+DNI  Y  R++G+E +    
Sbjct: 656  DTKGVFQLEGTGMTNTVKAFKPERLHDIIAIVSLYRPGPMDNIPTYLRRRHGQEPVSYAE 715

Query: 674  -IH--PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
              H   +++P+L ET G+ +YQEQ+MQIA  ++GY+L EAD+LRRAMGKK  EE+   ++
Sbjct: 716  FPHAAEMLEPILAETYGIPVYQEQIMQIASAVAGYTLGEADLLRRAMGKKKVEELKAHRD 775

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            RFI+GA K G+    A  IF+LL  FA+YGFNKSHAAAY++ISYQTA++K H+PVEF+AA
Sbjct: 776  RFITGAEKRGVPPDEASRIFDLLEAFANYGFNKSHAAAYSLISYQTAYVKAHFPVEFMAA 835

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +T+E  N +K+ ++ +DA    I ++PP +N    DF+V    I + L+A+K VG    
Sbjct: 836  LLTVERRNSDKVAEYIRDAEAGGIHVLPPDINRSGADFRVVGREILFGLSAVKNVGEGAV 895

Query: 851  RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              I+ E     PF SL DF  RVD   +N+R LESL+ AGA D FG  R Q+L +++ + 
Sbjct: 896  ESILNEREKGGPFRSLPDFLRRVDLHHVNKRALESLIKAGAFDAFGE-RGQMLDAMEGLL 954

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            K+A   ++        +F         +  L + +     +R   E+  LG Y +GHPL+
Sbjct: 955  KWAAAEQQKAAGGLTGLFDDGL----TEPPLPETAPLEEVIRLRFEKEALGIYVTGHPLE 1010

Query: 970  VYKPILRKMGIKGYEESVATIRGN-------NIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             Y P L +       E       N        + LA MV    ++ TR G  +     ++
Sbjct: 1011 HY-PGLAEAATCQVTELARWYEQNSGSKSRVRVLLAGMVEQITRRSTRSGGMMARFNLAD 1069

Query: 1023 PAKEYEANFF 1032
             +   E   F
Sbjct: 1070 ASGALEVVVF 1079


>gi|167918166|ref|ZP_02505257.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei BCC215]
          Length = 1111

 Score = 1027 bits (2656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1042 (39%), Positives = 605/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AG
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNHDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ L
Sbjct: 112  GRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   + 
Sbjct: 232  QKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ RL         +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA
Sbjct: 828  RSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 888  FDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MVIALLDDGTGQCEVTVF 1022


>gi|258653337|ref|YP_003202493.1| DNA polymerase III subunit alpha [Nakamurella multipartita DSM 44233]
 gi|258556562|gb|ACV79504.1| DNA polymerase III, alpha subunit [Nakamurella multipartita DSM
            44233]
          Length = 1175

 Score = 1027 bits (2656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1066 (35%), Positives = 569/1066 (53%), Gaps = 50/1066 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  + SFVHL VH+ YS+L+GA  L  +  + A    PA+A+TD  N+F A +F ++A A
Sbjct: 1    MSNTDSFVHLHVHTEYSMLDGAARLGELFARTAELGMPALAMTDHGNVFGAHDFYRQARA 60

Query: 65   AGIQPIIGCQLDIDM------QDNLKMTNQGKTPF---PTVPSIVLLVSTAEGYQRLIEL 115
            AG+ PIIG +  +        +  ++  + G            I LL  T +G   L  L
Sbjct: 61   AGVNPIIGMEAYLTPNTSRFDKTRVRWADGGDDDVSGAGAYTHITLLSETTQGMHNLFRL 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             SR  L        R     L E  + GLI  TG  SG +       +   A      F+
Sbjct: 121  ASRASLEG-FFYKPRADRELLSEY-SAGLIGTTGCPSGEVQTWLRIGNYDKALASAAEFR 178

Query: 176  KLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +   +  +V L  H    +      +++LA   +LP++ATN+  + ++ D  AH+ L+ 
Sbjct: 179  DILGKENYFVELMDHGLSIETRVRDGLIRLARDLQLPMIATNDLHYTNKADASAHEALLC 238

Query: 234  VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQVHA 289
            V     +   +R +   D  YLK+ +EM ++++D   L EA +NT+ IA RCS      +
Sbjct: 239  VQSGKTLDDPNRFKFDADDFYLKSPAEMRALWADKYDLREACDNTLLIAERCSVAFDEAS 298

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +PRF     +     E+     +   GL +R   G         + R++ D+E+ VI 
Sbjct: 299  SYMPRFPVPAGE----TEQTWFVKEVDKGLAIRFPGGI------PPEVRKQADYEVGVIT 348

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M F GYFL+VADFI WAK + I VGPGRGSGAGS+ AYA+ ITD++PL   L+FERFLN
Sbjct: 349  AMNFPGYFLVVADFINWAKDHGIRVGPGRGSGAGSMVAYAMRITDLNPLVHGLIFERFLN 408

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            PDR+SMPDFD+DF + RR +VIRYV  +YG +RVAQI+T+G+++AK A++D  R L MP+
Sbjct: 409  PDRVSMPDFDVDFDERRRGDVIRYVTERYGDDRVAQIVTYGTIKAKQAVKDSARVLGMPF 468

Query: 470  SQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEG 520
            S  DR+ K++P       V L  I + S         FR     DP V ++++ ++ LEG
Sbjct: 469  SVGDRITKVMPPPVMGKDVPLSKIFEPSDPRYNEGTEFRTLVDTDPDVRKVVDTARGLEG 528

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R    HAAG+++   PL  L+P+ +  +    +TQF+    EK GLIK DFLGL+ LT
Sbjct: 529  LKRQWGVHAAGVIMSSAPLLDLIPIMKREQDGAIITQFDYPTCEKLGLIKMDFLGLRNLT 588

Query: 581  LLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            +L  ++  + A R + + L  +P DD  TY LL+   TLG+FQL+   MR  L  M+PD 
Sbjct: 589  ILDDAVGNIRANREIDLVLEDLPLDDKATYELLSRGDTLGVFQLDGGPMRALLRSMRPDN 648

Query: 640  IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQE 693
             EDI A+++LYRPGP+  ++   Y +RK G++ +  IHP +      +L +T G+I+YQE
Sbjct: 649  FEDISAVIALYRPGPMGANSHNEYADRKTGRKPVTPIHPELADALQDLLGDTYGLIVYQE 708

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVM IAQ L+GY+L  AD+LRRAMGKK K E+D Q E F  G +  G S      ++++L
Sbjct: 709  QVMAIAQHLAGYTLGAADLLRRAMGKKKKAELDAQYETFSGGMAGRGYSPHAIKTLWDIL 768

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              F+DY FNK+H+AAY ++SY TA++K +YP E++AA +T   D+ +K+  +  + R   
Sbjct: 769  LPFSDYAFNKAHSAAYGMLSYWTAYLKANYPAEYMAALLTSVGDDKDKMAIYLAECRSMG 828

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV 872
            I++M P VN    +F      I + L+AI+ VGT     I+    D   +    DF  +V
Sbjct: 829  IKVMAPDVNASVQNFAPVGTDIRFGLSAIRNVGTGVVASIVACRKDKGAYTDFYDFLDKV 888

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D+   N++V+ESL+ AGA D  G+ R  LL            ++K       ++F     
Sbjct: 889  DATACNKKVVESLIKAGAFDSMGHPRKGLLMDHVRAIDEVLGLKKAEAIGQFDLFGEMSQ 948

Query: 933  TFSDKI---TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA- 988
                      +   +  ++ +R   E+ +LG Y SGHPL   + IL         + +  
Sbjct: 949  EEKGDTFRGNVPD-TEWDTKLRLGFEREMLGLYVSGHPLAGVEHILSAQSDASIPDVLDG 1007

Query: 989  -TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   I +  ++ + Q++ T+KG      T  + A   E  FFP
Sbjct: 1008 TIPDRALITVGGILTNLQRRLTKKGDPWASATLEDLAGGVEVAFFP 1053


>gi|284030835|ref|YP_003380766.1| DNA polymerase III subunit alpha [Kribbella flavida DSM 17836]
 gi|283810128|gb|ADB31967.1| DNA polymerase III, alpha subunit [Kribbella flavida DSM 17836]
          Length = 1182

 Score = 1027 bits (2656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1072 (33%), Positives = 558/1072 (52%), Gaps = 56/1072 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S SFVHL VH+ YS+L+GA  ++ +         PAIA TD   +F A EF + A  
Sbjct: 1    MASSDSFVHLHVHTEYSMLDGAARIDELFKTAQEMGMPAIATTDHGYVFGAYEFWKTAKK 60

Query: 65   AGIQPIIGCQLD---IDMQDNLKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLI 113
              ++PIIG +        +   K    G         +       + LL     G   L 
Sbjct: 61   YDVKPIIGVEAYLTPHTHRSERKRVKWGDANSGRDDVSGSGAYTHMTLLAKNTSGMHNLF 120

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            ++ S   L        R+    LQ  G +GLI  TG  SG +         + A +    
Sbjct: 121  KMSSLASLEG-YYFKPRMDRELLQTYG-QGLIATTGCPSGEVQTRLRLGQYKEAVEAAAE 178

Query: 174  FKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            F+ +F  +  Y  L  H  G +R  +  +++LA    LPLVATN+  +   ED  AH  L
Sbjct: 179  FRDIFGAENYYCELMDHGLGIERNVQQDLLKLARELGLPLVATNDLHYTKPEDATAHAAL 238

Query: 232  MAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + V   + +S  +R +    + Y+K  +EM  ++ DLPEA +NT+ IA +C         
Sbjct: 239  LCVQSGSTLSDPNRFKFDANEFYVKTAAEMREVWKDLPEACDNTLLIAEQCDVSFTEGEG 298

Query: 291  -ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +PRF   E       EE+    +   GL  R   G           R++ ++E+ VI 
Sbjct: 299  RFMPRFPCPEG----HNEESWFVAEVETGLHRRYPDGV------PDHVRKQAEYEIEVIT 348

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               ++GYFL+VADFI WAK++ I VGPGRGSGAGS+ AYA+ ITD+DPL+  L+FERFLN
Sbjct: 349  SKGYAGYFLVVADFINWAKEHGIRVGPGRGSGAGSMCAYAMRITDLDPLQHGLIFERFLN 408

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+RMSMPDFDIDF   RR EVIRYV  KYG +RVA I+T+G+++AK A++D GR L  P+
Sbjct: 409  PERMSMPDFDIDFDDRRRPEVIRYVTEKYGDDRVAMIVTYGTIKAKQAIKDAGRVLDYPF 468

Query: 470  SQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEG 520
            +  DR+ K +P       V L  I D           FR+   +D  V ++++ ++ LE 
Sbjct: 469  AMGDRITKAMPPAVMGKDVPLSGIFDPQHKRYSEAGEFRQLYESDADVRKIVDTARGLEN 528

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R    HAAG+++   PL +L+P+ R  +    +TQF+    E  GL+K DFLGL+ LT
Sbjct: 529  LKRQWGVHAAGVIMSSEPLIELIPIMRREQDGQVITQFDYPSCETLGLVKMDFLGLRNLT 588

Query: 581  LLQKSLDFL-AQRGVKVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            ++  ++  + A RG+ +DL       DD  T+ LL    TLG+FQ +   MR  L  M+P
Sbjct: 589  IMDDAVKNVEASRGITLDLDELAKTLDDKATFELLGRGDTLGVFQFDGGPMRALLRLMKP 648

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIY 691
            D  EDI A+ +LYRPGP+  ++   Y  RKN +++I   H  +    +P+L  T G+I+Y
Sbjct: 649  DNFEDISAVGALYRPGPMGANSHTNYALRKNKQQEISYPHDELAVALEPILGTTYGLIVY 708

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVM IAQ L+GY+L +AD+LRRAMGKK +E +D +   F  G    G S      +++
Sbjct: 709  QEQVMAIAQQLAGYTLGKADLLRRAMGKKKREVLDAEYVGFSEGMKAGGFSDASIKALWD 768

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +L  F+DY FNK+H+AAY ++SY TA++K +YP E++AA +T   D+ +K+  +  + R+
Sbjct: 769  VLVPFSDYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAAVLTSVKDDKDKMAIYLNECRR 828

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
              I+++PP VN    +F      I + L+AI+ VG      I+ A  +   F    DF  
Sbjct: 829  MGIKVLPPDVNESDSNFTPVGTDIRFGLSAIRNVGVNVVAEIVAAREEKGRFTDFVDFID 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +V     N+RV+ESL  AG+ D   ++R  ++   +     A  +++N  +   ++F+  
Sbjct: 889  KVPLPVCNKRVIESLAKAGSFDSMNHARRAVVAVHEQAVDEAIDLKRNEAHGQFDLFSMG 948

Query: 931  KGTFSD-------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                 D        +T+ +    + + +  +E+ +LG Y S HPL   + +L        
Sbjct: 949  DDDAEDGEGNRRLTVTVPEIEEWDKATKLAHERDMLGLYVSDHPLFGVEHVLTNGTDCTI 1008

Query: 984  EESVA---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +A      G+ + +  +V + Q+K  ++G     VT  +     E   F
Sbjct: 1009 GQLLADEDRPDGSQVTIGGLVTAVQRKVNKRGDIYAIVTIEDLEGSIEVMMF 1060


>gi|329944570|ref|ZP_08292710.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 170
            str. F0386]
 gi|328530123|gb|EGF57006.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 170
            str. F0386]
          Length = 1197

 Score = 1027 bits (2656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1073 (33%), Positives = 570/1073 (53%), Gaps = 60/1073 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YS+L+GA  + + + +     QPA+AITD   +F A EF   A A GI+P
Sbjct: 15   DFVHLHVHTDYSMLDGAGKVKDYVAEAKRLGQPALAITDHGYMFGAYEFYAAAKAVGIKP 74

Query: 70   IIGCQLDIDMQ-DNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            IIG +  +         T              +   +   + LL    EG   L+ + S 
Sbjct: 75   IIGVEAYMTPGTSRFDKTRIFWGDESQRGDDVSARGSYTHMTLLSRNNEGLHNLMRMDSF 134

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L  Q  ++ RI    L   G  GLI  TG  S  +           A +     + +F
Sbjct: 135  ASLEGQWGKAPRIDRELLSRYGG-GLIGTTGCPSSEVQTRLRLGQWDEALRAAGELQDIF 193

Query: 179  GDRL-YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            G    YV L  H    ++     +++LA     PL+ATN+S ++  ED    D ++ +  
Sbjct: 194  GKEFFYVELMDHGLEIEQRVTKDLLRLAQEIGAPLLATNDSHYVRPEDRTIQDAMLCINS 253

Query: 237  STVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSF---ILQVHAPIL 292
             +V+S  DR R   D +YL+  +EM  +FS++P A +NT+ +A +C      +   A  +
Sbjct: 254  GSVLSDPDRFRFDGDTYYLRPGAEMRRLFSEMPHACDNTLLVAEQCDVHFRTVDEGASFM 313

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P F   E +     +E+    +   G++ R        G   +D R++ ++E++VI +M 
Sbjct: 314  PAFPVPEGE----TDESWFIKECWRGMDRRF------NGDIPEDCRKQAEYEISVITQMG 363

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFL+VAD+I WAK + I VGPGRGSGAGS+ AYA+ IT+++PLR  L+FERFLNP+R
Sbjct: 364  FPGYFLVVADYINWAKAHGIRVGPGRGSGAGSMVAYAMGITELNPLRHGLIFERFLNPER 423

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD D+DF + RRDEVI YV+ KYG +R++Q++T+G ++AK +L+D  R +  PY+  
Sbjct: 424  ISMPDIDVDFDERRRDEVIEYVREKYGADRISQVVTYGVIKAKQSLKDSSRVMGYPYAVG 483

Query: 473  DRLCKLIPND-PAHPVSLQAIA--------DDSRFREARLADPSVDRLLEISQKLEGLYR 523
            DRL K +P       +S++ I         +   FR+    DP   +++++++ LEG+ R
Sbjct: 484  DRLTKAMPPSVQGKDISIKGIFNPDDERYGEAEEFRKLHAEDPDAQKIVDLAKGLEGMTR 543

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
                HA  +++    L+ ++PM + ++    +TQF+    E  GL+K DFLGL+ LT++ 
Sbjct: 544  QWGVHACAVIMSSATLTDIIPMMQRLQDGAVITQFDYPTCEHLGLLKMDFLGLRNLTVIS 603

Query: 584  KSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             +LD + A     +D+  +  DD  TY LL+   TLG+FQL+  GMR  L  M+PD  ED
Sbjct: 604  DALDNIVANGKPALDIDHVELDDRGTYELLSRGETLGVFQLDGGGMRTLLRLMKPDNFED 663

Query: 643  IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQEQVM 696
            I A+ +LYRPGP+  ++   Y  RKNG +++V IHP +    +P+L  T G+I+YQEQVM
Sbjct: 664  ISAVGALYRPGPMGAESHTNYALRKNGLQEVVPIHPELKEALEPILGTTHGLIVYQEQVM 723

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            +IA  L+G+S+ +AD LR+AMGKK  + + K    F +G  + G SK     +++++  F
Sbjct: 724  KIATDLAGFSMGKADALRKAMGKKKMDILAKMFVEFEAGMVQAGFSKESVKTLWDVVVPF 783

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A Y FNK+H+AAY V+SY TA++K HYP E++AA +T + DN +K+  +  + R   I +
Sbjct: 784  AKYAFNKAHSAAYGVVSYWTAYLKAHYPTEYMAALLTSQKDNKDKLAVYLGECRHMGITV 843

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK 875
            +PP VN     F   D  + + L+A++ VG      I+ A  +   F S EDF  +V + 
Sbjct: 844  LPPDVNASRAQFSAVDEDVRFGLSAVRNVGINVVDAIVAARREKGEFTSFEDFLDKVPAV 903

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
              N+R ++SL+ AGA D  G++R  L    ++       V++N      ++FA   G   
Sbjct: 904  VCNKRTIDSLIKAGAFDSLGHTRRSLQACHEDFVDEVIGVKRNEAAGQFDLFASLTGGSD 963

Query: 936  DK------------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
             +              +      +   +   E+ +LG Y S HPL   + +L K+  K  
Sbjct: 964  GEDSSPFGNGPVFSSDVPNLPEWDKKDKLAYERDMLGLYVSDHPLMGLEGLLGKLADKEI 1023

Query: 984  EESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             E         G  + +A ++ S  +K T++G+        + A   E  FFP
Sbjct: 1024 SELHENDELPDGAMVSIAGLITSLTRKTTKQGNLWAIAQIEDLAGSIEVLFFP 1076


>gi|120611898|ref|YP_971576.1| DNA polymerase III subunit alpha [Acidovorax citrulli AAC00-1]
 gi|120590362|gb|ABM33802.1| DNA polymerase III, alpha subunit [Acidovorax citrulli AAC00-1]
          Length = 1190

 Score = 1027 bits (2656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1058 (39%), Positives = 601/1058 (56%), Gaps = 57/1058 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL++H+ +S+++G   ++ +    + D QPA+AITD +NLF A++F ++A   G++
Sbjct: 9    PMFVHLRLHTEFSVVDGTARIDEVAKAASKDGQPALAITDLHNLFGAIKFYKEARGKGVK 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P++G ++ I+ +          T       I+LL    +GY  L E+++R +  +  K  
Sbjct: 69   PVLGAEVSIEPE----------TAGGPPGRILLLAQGRQGYLNLCEMLARAWTRNVVKNV 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                  WLQE+G   LI L+G  +GP+ +AF       A +  L    +F  R Y+ LQR
Sbjct: 119  PLCTWEWLQELGG-DLIALSGAQAGPVGQAFTRGDEAGAARVALRLAGIFPHRFYLELQR 177

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
              R  D  +    VQLA    LP+VAT  + FL+ +DYEAH+  + +A   +++   R  
Sbjct: 178  AGRPEDESQVVAAVQLAARLNLPVVATQPTQFLTADDYEAHEARVCIAEGEILANPRRVR 237

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R T + Y K+ ++M ++F+D+P A+ NT+EIA+RCS  L +  P LP F       I   
Sbjct: 238  RFTREQYFKSSAQMEALFADVPTAIANTLEIAKRCSLTLVLGKPRLPDFPTPNGMPI--- 294

Query: 307  EENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E   R  +  GLE RL         +      Y +RL+FEL  I +M F GYFLIV DF
Sbjct: 295  -EEYFRYASFEGLEERLKHLFPNEAEREKQRPRYVERLEFELGTILKMGFPGYFLIVGDF 353

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK+N  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFC
Sbjct: 354  IQWAKQNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFC 413

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q  RD VI YV++KYG   V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P
Sbjct: 414  QSNRDRVIDYVKDKYGKNAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKP 473

Query: 484  AHPVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
                +L               A+  +    E    +  V  ++E++QKLEG+ R+   HA
Sbjct: 474  GMSYTLAYPPEVKKEGDKNNYALELEPMLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHA 533

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F+
Sbjct: 534  GGVLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFI 593

Query: 590  AQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             +R    +      IP DD  TY L +   T  +FQ ES GM+  L+  +P  +ED+IAL
Sbjct: 594  MKRHKGQENFAFENIPLDDAPTYRLFSEGKTEAVFQFESRGMQGMLKEARPSRLEDLIAL 653

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
             +LYRPGP+D I  + NRK+GKE +   HPL++P+L ET G+++YQEQVMQ AQ+L GYS
Sbjct: 654  NALYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYS 713

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM + +E F  GA++ GI +  A  +F+L+ KFA YGFNKSHA
Sbjct: 714  LGGADMLRRAMGKKKAEEMAEHREIFRKGAAEKGIGQDKADEVFDLMEKFAGYGFNKSHA 773

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAY++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA +  +   PP VN    
Sbjct: 774  AAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLYEDAMKMGLTFEPPDVNRGMY 833

Query: 827  DFKVGDNR-IYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSK 875
             F+   ++ I Y L A+KG G      I+ A              PF SL DFC+RVD  
Sbjct: 834  RFEPVTDKVIRYGLGAVKGTGQQAIEAIIAAREGRGVGPRGDTKGPFASLFDFCARVDRT 893

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEK 931
            +LN+R LE+L+ AGA D    +R  L+ S+D    +A  +  N       +F        
Sbjct: 894  RLNKRTLEALIKAGAFDAIEMNRASLVASIDRAFDFANSLIANAN--QGGLFDMMGDDAH 951

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
            G+ +    L +        R   E+  +GFY SGH  D  +  +R+      EE   +  
Sbjct: 952  GSSTQDPALVEMLPWGVKERLTQEKTAVGFYLSGHLFDEVEKEVRRFVRTPIEELADSRE 1011

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +A +V   +    ++G R+      + +   EA
Sbjct: 1012 PQ--IMAGIVSDFRVINGQRG-RLALFKLDDKSAMIEA 1046


>gi|114770394|ref|ZP_01447932.1| DNA polymerase III subunit alpha [alpha proteobacterium HTCC2255]
 gi|114549231|gb|EAU52114.1| DNA polymerase III subunit alpha [alpha proteobacterium HTCC2255]
          Length = 1128

 Score = 1027 bits (2655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 472/1017 (46%), Positives = 664/1017 (65%), Gaps = 29/1017 (2%)

Query: 28   SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTN 87
             +  +   +  +Q PA+A+TDTNN+F ALEFS+ A   G+QPI+GCQ+++         +
Sbjct: 2    HVKKLPSAVIKEQMPAVALTDTNNMFGALEFSEIASIEGVQPIVGCQMNLAYMTADNPRD 61

Query: 88   QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML 147
            +   P P    IVLL  +  GY  L++L S ++L + G +   I  + LQ+   +GLI L
Sbjct: 62   RNPLPLP----IVLLAQSEIGYLNLMKLSSCLFL-ESGDEPAHITTTQLQKY-NDGLICL 115

Query: 148  TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-------YDRYRESQV 200
            TGG+ GP+ +         A+  L    ++F +R YV +QRH          ++  E   
Sbjct: 116  TGGALGPVGQLLQDGHIDKAKILLKHLSEIFLNRTYVEIQRHGSDGEKYTLEEQKTEKYF 175

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSE 259
            +++AY+ ELPLVATN+  F + E Y AHD L+ ++  + V Q+D R R+TP+HY K+  E
Sbjct: 176  LEMAYSMELPLVATNDVYFPNREMYAAHDALLCISEGSYVDQQDGRRRLTPEHYFKSSGE 235

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M+ +F DLPEA++NT+EIA+RC+F +    PILP+F E E          ELR +A  GL
Sbjct: 236  MIELFKDLPEAIDNTIEIAKRCAFKVYKRDPILPKFAEDEV--------QELRRQANEGL 287

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
            + RL    I        Y+ RL+FEL++I  M F GYFLIVADFI+W+K N+IPVGPGRG
Sbjct: 288  KKRLE--VIQHATTVDVYQDRLNFELDIIEGMGFPGYFLIVADFIRWSKSNDIPVGPGRG 345

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            SGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVIRYVQ KYG
Sbjct: 346  SGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYVQGKYG 405

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRF 498
             +RV QIITFG L +KAA+RDVGR LQMPY QVDRL KLIP +   PVS+ +A+A++ + 
Sbjct: 406  RDRVGQIITFGGLLSKAAIRDVGRVLQMPYGQVDRLSKLIPVEGVKPVSIEKALAEEPQL 465

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
            RE   ++  VDR+L+ +Q++EGL R+ASTHAAG+VI DRP+ +LVP+Y+D RSD+P TQF
Sbjct: 466  REMAKSEEVVDRMLKYAQQVEGLLRNASTHAAGVVIADRPIDELVPLYQDPRSDMPATQF 525

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
            NMKW+E+AGL+KFDFLGLKTLT+++ ++D + +RG+ V++  I  +D  T+ L  +  T+
Sbjct: 526  NMKWVEQAGLVKFDFLGLKTLTVVKGAVDLIRKRGINVNIDAIDLEDKATFDLYASAKTV 585

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
             +FQ+ESSGM  AL  M+P+CIEDI+ALV+LYRPGP++NI  Y + KNG+     +HP I
Sbjct: 586  AVFQVESSGMMDALRRMKPNCIEDIVALVALYRPGPMENIPQYCDVKNGRADRELMHPSI 645

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            D +L+ETQG+I+YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+ EMDK++ +F+ GA  
Sbjct: 646  DHLLEETQGIIVYQEQVMQIAQEMAGYSLGGADLLRRAMGKKIQAEMDKERPKFLEGAFN 705

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG+    A  +++LL KFA+YGFNKSHAAAYAV+SYQTAW+K +YPVEF+A+ M  ++  
Sbjct: 706  NGVEPKKAEEVWDLLDKFANYGFNKSHAAAYAVVSYQTAWLKANYPVEFMASVMNCDLHL 765

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
             +K+  +  + ++  I+I+PP +N     F V D  I Y+L  +K VG+   R   +A  
Sbjct: 766  TDKLHVYFDEVKRLGIEIIPPCINRSEALFSVNDGMIAYALGGLKNVGSDAMRLFTDARI 825

Query: 859  DKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
            +   F  L D   RVD +++ +R LE L+ +GA D    +R ++ +SLD +  Y+    +
Sbjct: 826  NGGLFLDLIDVARRVDLRRVGKRPLEMLIRSGAFDQLDSNRKKVFESLDALVGYSSATHE 885

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
               +    +F  + G       L          R   E + +GFY SGHPLD Y   L++
Sbjct: 886  EMNSSQGGLFG-DAGEDLPAPRLPMPEDWLPIERLTEEHKAIGFYLSGHPLDDYMGALKR 944

Query: 978  MGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              I    E     +G  I  ++A  V  KQ +K+ KG+R  +   ++P   YE   F
Sbjct: 945  KNILTLHELEQKAQGGKIIAKIAGSVSGKQVRKSAKGNRFAFAQLTDPTGAYEVTIF 1001


>gi|225847875|ref|YP_002728038.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium azorense
            Az-Fu1]
 gi|225643592|gb|ACN98642.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium azorense
            Az-Fu1]
          Length = 1172

 Score = 1027 bits (2655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1052 (35%), Positives = 586/1052 (55%), Gaps = 34/1052 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL+GA+ + ++  K       A+ +TD  N+F A+EF Q+  + G++P
Sbjct: 4    DFVHLHLHTHYSLLDGAIKIKDLAKKAVEYGYKAVGLTDHGNIFGAVEFYQEMKSVGVKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF--PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IIG +      +  +   +G           ++L      G++ L++L S  Y       
Sbjct: 64   IIGMESYFTN-NRFEKKGEGSDDILTDKNYHLILFAKDKTGFKNLMKLSSLSYTEG-FYY 121

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              RI    L++   EGLI  T    G I         + A+K     K +FG+ LY  +Q
Sbjct: 122  KPRIDWELLEKYH-EGLICQTACLKGFIPNLLSKGQYEEAKKYAKRLKDIFGEDLYFEIQ 180

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS---QK 243
             +   ++      +++LA    + +V TN+S +L+ ED  AHDV+ A+     +    +K
Sbjct: 181  VNGLEEQEEANKGIIKLAKELGIKVVGTNDSHYLNPEDQPAHDVIKALQMKETLQSLQEK 240

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKEC 300
             +       +  +  EM   F    E L+NT+EIA +C+  +   +    + P++     
Sbjct: 241  GKAFKVKGLHFTSPEEMYEKFKGYEEYLKNTMEIAEKCNVEIDTAETRGYLFPKYQIPGI 300

Query: 301  D-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +   Q++ +      +  GLE RL +         Q+YR+RL +E++VI  M F+ YFLI
Sbjct: 301  ENPTQEDIKAYFEKLSKEGLEKRLEKEKNLSKEKLQEYRERLQYEIDVINNMGFAEYFLI 360

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI +AK N IPVGPGRGS  GS+ AY L IT+IDPL+  L+FERFLNP+R+SMPD D
Sbjct: 361  VQDFINYAKNNGIPVGPGRGSAGGSLVAYCLGITEIDPLKHGLIFERFLNPERISMPDID 420

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC + R++VIRYV++KYG + VAQIITF  +++K  +RDV R L  PY + D++ K+I
Sbjct: 421  VDFCMENREKVIRYVKDKYGEDSVAQIITFNFMKSKMVIRDVARVLGFPYQEADKIAKMI 480

Query: 480  PNDPAHPVSL---QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
               P    +L   + +  +  FR+    DP V +LL++++KLEG  RH   HAAGIVI  
Sbjct: 481  LPGPIQGSTLTIDENLEANPDFRKLYETDPKVKQLLDLARKLEGSARHTGIHAAGIVIAP 540

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
             PL + VP+YRD +     TQF MK +E+ GL+K DFLGLKTLT L      + +R  ++
Sbjct: 541  GPLDEYVPVYRD-KDGNKATQFEMKTLEQLGLVKMDFLGLKTLTELDLMKKLIKERHGIE 599

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            ++   +P DD   Y LL +  T G+FQLES GM+  L  ++P   ++IIA+++L+RPGP+
Sbjct: 600  INYQDLPLDDENVYKLLQSGKTTGVFQLESKGMQDLLVRLKPTVFDEIIAILALFRPGPL 659

Query: 656  DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             + +V  Y  RK+G++ I      +  +LKET G+I+YQEQ+M ++ +LSG+S++EAD L
Sbjct: 660  MSGMVDEYIERKHGRKPIEYPFEEVKEVLKETYGLIVYQEQIMFMSNILSGFSMAEADTL 719

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+A+GKK  E M K K RF+ GA + G  +     +++ + KFA Y FNKSH+ AYA ++
Sbjct: 720  RKAIGKKNPETMAKMKGRFVEGAVERGFDREKVEKLWDDIEKFASYSFNKSHSTAYAYLT 779

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y TAW+KT+Y  EF A  ++ E+++ + +     D   F I+++PP VN    +F +   
Sbjct: 780  YWTAWVKTYYTDEFFAVKLSTEVNDSKFLNLLI-DMENFGIKLLPPDVNKSMAEFYIESP 838

Query: 834  RI-YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +   + LA IK VG ++A+ I+ E   +  F  + DFC R+D+K  N+RVLESL+ AGA 
Sbjct: 839  KNIRFGLARIKNVGESSAKEIVKEREKNGEFVDIFDFCERLDTKTANKRVLESLIKAGAF 898

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVE--NS 948
            D     R  LL ++D      Q   +++     ++FA       + K T E   ++    
Sbjct: 899  DFEKVDRAILLNNVDKAISSGQKARESKMAGQNSLFALTTTPVVNVKHTYEDTGIKKLTE 958

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNN------IRLAAMV 1001
              + + E+ VLGFY SGHP++ YK  L+   +    E    +  G        ++ A +V
Sbjct: 959  REKLKYEKEVLGFYLSGHPINAYKKELKGK-VAKIGEIYDLVFSGKRPEGDLKVKFAGVV 1017

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               + KKT+ G+ +   +FS+   + +   FP
Sbjct: 1018 DEIKLKKTKSGNTMMMFSFSDETGQIDCRAFP 1049


>gi|219684390|ref|ZP_03539334.1| DNA polymerase III subunit alpha [Borrelia garinii PBr]
 gi|219672379|gb|EED29432.1| DNA polymerase III subunit alpha [Borrelia garinii PBr]
          Length = 1161

 Score = 1027 bits (2655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1036 (39%), Positives = 615/1036 (59%), Gaps = 25/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 15   MSFKAKFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 74

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +      K   +          ++LL     GY+ L++L S  YL   
Sbjct: 75   AGIKPIIGIEAYMAKTS--KFFKKHDDLGKMSYHLILLAKNEIGYKNLLKLTSISYLEG- 131

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 132  FYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 190

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V+ +    +PL ATN+S +++ ED  A D+++ +      S +
Sbjct: 191  ELQRHGIKDQNIVNERLVEYSRELGVPLAATNDSHYVNREDAVAQDIIVCIGTGAKKSDE 250

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKEC 300
            +R    T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E 
Sbjct: 251  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIEF 310

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +       L    + GL+ R               + R  +EL+VI RM F GYFLIV
Sbjct: 311  NTLG----EYLEYLTLEGLKFRY-------RTLTSKIKDRAFYELSVIIRMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L KLIP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKLIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L++ +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGPK--VSLKEVLDDNSLKEYFTSKPVYKELMDAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+ +L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFKMLGEGKSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G + I   HP +  +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKSIKYPHPDLKEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EMD+ K  F+ GA + G  K +A  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMDEMKVDFLRGAIEKGYDKEVASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPQYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFKEFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AIK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  AIKNLGEIVVDLIIDEREKNGKYISFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG--TFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F   KG          + F   + S   E E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFDVLKGQNPIQQNFNYQAFKEYSYSELLEFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +         + +AT + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAINSFSSLNVLKDLATKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|53725488|ref|YP_103508.1| DNA polymerase III subunit alpha [Burkholderia mallei ATCC 23344]
 gi|67640628|ref|ZP_00439428.1| DNA polymerase III, alpha subunit [Burkholderia mallei GB8 horse 4]
 gi|124383354|ref|YP_001026814.1| DNA polymerase III subunit alpha [Burkholderia mallei NCTC 10229]
 gi|126449054|ref|YP_001079902.1| DNA polymerase III subunit alpha [Burkholderia mallei NCTC 10247]
 gi|167000890|ref|ZP_02266691.1| DNA polymerase III, alpha subunit [Burkholderia mallei PRL-20]
 gi|254175785|ref|ZP_04882445.1| DNA polymerase III, alpha subunit [Burkholderia mallei ATCC 10399]
 gi|254202193|ref|ZP_04908556.1| DNA polymerase III, alpha subunit [Burkholderia mallei FMH]
 gi|254207520|ref|ZP_04913870.1| DNA polymerase III, alpha subunit [Burkholderia mallei JHU]
 gi|254359936|ref|ZP_04976206.1| DNA polymerase III, alpha subunit [Burkholderia mallei 2002721280]
 gi|52428911|gb|AAU49504.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia mallei ATCC
            23344]
 gi|124291374|gb|ABN00643.1| DNA polymerase III, alpha subunit [Burkholderia mallei NCTC 10229]
 gi|126241924|gb|ABO05017.1| DNA polymerase III, alpha subunit [Burkholderia mallei NCTC 10247]
 gi|147746440|gb|EDK53517.1| DNA polymerase III, alpha subunit [Burkholderia mallei FMH]
 gi|147751414|gb|EDK58481.1| DNA polymerase III, alpha subunit [Burkholderia mallei JHU]
 gi|148029176|gb|EDK87081.1| DNA polymerase III, alpha subunit [Burkholderia mallei 2002721280]
 gi|160696829|gb|EDP86799.1| DNA polymerase III, alpha subunit [Burkholderia mallei ATCC 10399]
 gi|238521386|gb|EEP84838.1| DNA polymerase III, alpha subunit [Burkholderia mallei GB8 horse 4]
 gi|243063197|gb|EES45383.1| DNA polymerase III, alpha subunit [Burkholderia mallei PRL-20]
          Length = 1174

 Score = 1026 bits (2653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1042 (39%), Positives = 605/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AG
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNHDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ L
Sbjct: 112  GRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   + 
Sbjct: 232  QKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ RL         +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNDRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA
Sbjct: 828  RSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 888  FDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MVIALLDDGTGQCEVTVF 1022


>gi|149926718|ref|ZP_01914978.1| DNA polymerase III subunit alpha [Limnobacter sp. MED105]
 gi|149824647|gb|EDM83863.1| DNA polymerase III subunit alpha [Limnobacter sp. MED105]
          Length = 1176

 Score = 1026 bits (2653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1070 (37%), Positives = 595/1070 (55%), Gaps = 59/1070 (5%)

Query: 1    LTQYLEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
            +T      PS FVHL++H+ +S+L+G + +   +   A    PA+AI+D +NLF  ++F 
Sbjct: 1    MTNSSPTLPSTFVHLRMHTEFSVLDGMVRVGEAVKAAAGCGMPALAISDLSNLFGLIKFY 60

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
             KA  AG++PI  C + I          +          ++LLV   +GY +L EL+SR 
Sbjct: 61   GKARGAGVKPIAACDVWI----------ESDRDEEQPARMLLLVQNHKGYLQLCELLSRA 110

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +L +Q +    +   W  E+G +GLI ++G +S  I +     +   AE     F K F 
Sbjct: 111  FLRNQKRGKATLKFEWFDEVGCDGLIAISGFASSDIGQFLLGGNMARAEDSARKFLKHFE 170

Query: 180  DRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             R Y+ LQR           +  QLA   +LP+VAT+   FL  ED+ AH+  + +A   
Sbjct: 171  GRYYIELQRDGSTQAENLVNLSCQLAAKLQLPVVATHPIQFLKPEDFRAHEARVCIAQGE 230

Query: 239  VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            ++S   RPR  T   Y K   EM  +F+D+P A+ N++ IA+RC+  L++  P LP F  
Sbjct: 231  ILSNPRRPRRFTEQQYFKTAQEMAELFADIPSAIRNSIRIAQRCNLTLELGKPKLPAFPT 290

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFS 354
             +   +    ++ L + +  GLE RLA        +     +Y  RL  E + I  M F 
Sbjct: 291  PDGMTL----DDYLVHLSKEGLEKRLAHLFPSIEEREKMRPEYEARLKIECDTIIGMGFP 346

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV DFI W KKN +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+S
Sbjct: 347  GYFLIVQDFINWGKKNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYDLLFERFLNPERVS 406

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFDIDFCQD RD VI YV+  YG + V+QI TFG+L AKA +RD GR L MPY   D 
Sbjct: 407  MPDFDIDFCQDNRDRVIDYVKQNYGRDAVSQIATFGTLGAKAVIRDAGRVLDMPYMYCDG 466

Query: 475  LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            L KLIP  PA P  L  A+AD+  FRE    +     ++ +++ LEGL R+   HA G++
Sbjct: 467  LSKLIPQTPADPWDLDRAMADEPTFRERVENEDEAKEIIAVARPLEGLTRNVGMHAGGVL 526

Query: 534  IGDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            I    L+   P+Y  D  +D  V+Q++   +E  GL+KFDFLGL+ LT+L  ++ ++ + 
Sbjct: 527  IAPGKLTDFCPLYCADGSTDSVVSQYDKDDVEAVGLVKFDFLGLRNLTILDWAVRWVREN 586

Query: 593  GV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                    L  +P DD   Y L +   T  +FQ ES   +   + ++PD  EDIIAL++L
Sbjct: 587  YEDQRDFRLEDLPLDDPAVYQLFSDGNTTAVFQSESRSAKDLEKKLKPDNFEDIIALMAL 646

Query: 650  YRPGPIDNIVV--YNNRK-------NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             RPGP+ + +V  +  RK        G+ +    HP ++ +LK T GVI+YQEQVM +AQ
Sbjct: 647  NRPGPLGSGMVDDFIARKKETSKTGKGRAEW-YFHPKLEGILKSTYGVIVYQEQVMLVAQ 705

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +L+GYSL  AD+LRRAMGKK  EEM KQ+E F +GA++ G+   +A  +F+L+ KFA+YG
Sbjct: 706  ILAGYSLGGADLLRRAMGKKKPEEMAKQREIFTTGATERGVDPAVAKQLFDLMEKFAEYG 765

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN------- 813
            FNKSH+AAYA+I+Y TAW+K HYP EF+AASM+ +MD+ +K+K F +DA           
Sbjct: 766  FNKSHSAAYALIAYHTAWLKAHYPAEFMAASMSSDMDDTDKVKIFVEDAMAMCQVPGKKA 825

Query: 814  ---IQIMPPSVNTPCVDFKVGD-------NRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862
               + ++ P VN     F           + I Y L A+KG G      I+    A+ PF
Sbjct: 826  GTTVTMLGPDVNESNFRFTAVRIDGEKRASAIRYGLGAVKGTGQAACEAIVAERNANGPF 885

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             SL DF  RVDSK++NRRV+E+L+ AGA D     R +LL S     ++A       +  
Sbjct: 886  TSLFDFVKRVDSKQINRRVIEALIRAGAFDALNPDRAKLLASSGQAMEWAAQQAATASQ- 944

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
              ++F  + G  +    L +    +   + + E+  LG+YFSGH     +  +R+     
Sbjct: 945  -VSLFGEDLGGDAP-PELVEVPTWSEREKLQQEKAALGYYFSGHLFKADEANVRQFVKLR 1002

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++         + +A ++ S +   T++G  +  V   +   + E + F
Sbjct: 1003 LKDLSPGRD--MVWMAGVIASLRTMMTKRGK-MAIVLLDDSTAQVELSIF 1049


>gi|254190629|ref|ZP_04897136.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pasteur
            52237]
 gi|157938304|gb|EDO93974.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pasteur
            52237]
          Length = 1174

 Score = 1026 bits (2653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1042 (39%), Positives = 604/1042 (57%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AG
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNHDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ L
Sbjct: 112  GRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGGEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + + + + +M ++F+DLP A  NTVEIA+RC+  L++  P LPRF   +   + 
Sbjct: 232  QKRFTTEQFFRTQGDMAALFADLPSARANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ RL         +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA
Sbjct: 828  RSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 888  FDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MVIALLDDGTGQCEVTVF 1022


>gi|219685116|ref|ZP_03539936.1| DNA polymerase III subunit alpha [Borrelia garinii Far04]
 gi|219673212|gb|EED30231.1| DNA polymerase III subunit alpha [Borrelia garinii Far04]
          Length = 1161

 Score = 1026 bits (2653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1036 (39%), Positives = 614/1036 (59%), Gaps = 25/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 15   MSFKAKFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 74

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  +      K   +          ++LL     GY+ L++L S  YL   
Sbjct: 75   VGIKPIIGIEAYMAKTS--KFFKKHDDLGKMSYHLILLAKNEIGYKNLLKLTSISYLEG- 131

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 132  FYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 190

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V+ +    +PL ATN+S +++ ED  A D+++ +      S +
Sbjct: 191  ELQRHGIKDQDIVNERLVEYSRKLGVPLAATNDSHYVNREDAVAQDIIVCIGTGAKKSDE 250

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKEC 300
            +R    T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E 
Sbjct: 251  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIEF 310

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +       L    + GL+ R               + R  +EL+VI RM F GYFLIV
Sbjct: 311  NTLG----EYLEYLTLEGLKFRY-------KTLTSKIKDRAFYELSVIIRMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L KLIP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKLIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L++ +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGPK--VSLKEVLDDNSLKEYFTSKPVYKELMDAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+ +L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFKMLGEGKSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G + I   HP +  +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKSIKYPHPDLKEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K +A  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEVASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPQYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFKEFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AIK +G      I+ E   +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  AIKNLGEIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG--TFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F   KG          + F   + S   E E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFDVLKGQNPIQQNFNYQAFKEYSYSELLEFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +         + +AT + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAINSFSSLNVLKDLATKKDSVVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|119487742|ref|ZP_01621251.1| DNA polymerase III subunit alpha [Lyngbya sp. PCC 8106]
 gi|119455575|gb|EAW36712.1| DNA polymerase III subunit alpha [Lyngbya sp. PCC 8106]
          Length = 1206

 Score = 1026 bits (2653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1085 (35%), Positives = 606/1085 (55%), Gaps = 73/1085 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  L  ++++    + PAIA+TD   ++ A+E  ++  + GI+P
Sbjct: 2    SFVGLHIHSDYSLLDGASQLPQLIERAVELKMPAIAVTDHGVMYGAIELIKQCRSKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
            IIG ++ +   D  +   + K         V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62   IIGNEMYVINADVTQQQGRLKK-----YHQVVLAKNTKGYKNLVKLTTISHLQGFQGKGI 116

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L++   EGLI+ +    G + +A     S VA K    ++ +FG+  Y+ 
Sbjct: 117  FARPCINKELLKQYH-EGLIVTSACLGGELPQAILQGRSDVARKVAKWYQDVFGEDYYIE 175

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V++A   ++ ++ATN+S F+S  D EAHD L+ +    ++++  
Sbjct: 176  IQDHGSPEDRIVNVELVKIAREFDIKIIATNDSHFISCYDVEAHDALLCINTQKLITEDK 235

Query: 245  RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCS-FILQVHAPILPRFIE 297
            R R +   YLK+  EM  +F D      + EA+ NT+E++ +   +   +    +P +  
Sbjct: 236  RMRYSGTEYLKSAEEMAQLFRDHLPDDVIREAIANTIEVSEKIEPYTGILGESRIPDYPI 295

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAI--AKGYHAQDYRQRLDFELNVIARMKFSG 355
                      +  L      GL  RL        +      YR+RL++EL ++ +M FS 
Sbjct: 296  PPN----HTSDTYLEEVTWKGLIERLQDQIKIQTRSEIPPVYRERLEYELKMMQKMGFST 351

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+V D+I++A+ + IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP+R SM
Sbjct: 352  YFLVVWDYIKYARDHQIPVGPGRGSAAGSLVAYSLGITNIDPVHHGLLFERFLNPERKSM 411

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D DFC  RRDE+IRYV N+YG ++VAQIITF  + +KA L+DV R L +PYS+ D++
Sbjct: 412  PDIDTDFCIARRDEMIRYVTNQYGEDKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQM 471

Query: 476  CKLIPNDPAHPVSLQAIADD----SRFREARLADPS--------------VDRLLEISQK 517
             KLIP     P  L+ +  D      F+ A   +                V + ++++ +
Sbjct: 472  AKLIPVSRGKPAKLKVMISDDTPSPEFKSAYETEDVPIKNDLGNEVGTIPVRQWIDMAIR 531

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EG  +    HAAG+VI  +PL ++VP+ R+      +TQ+ M+ IE  GL+K DFLGLK
Sbjct: 532  IEGTNKTFGVHAAGVVISKQPLDEIVPLQRN-NDGAVITQYFMEDIEALGLLKMDFLGLK 590

Query: 578  TLTLLQKSLDFLAQRGVKV--------------------DLSLIPFDDHETYHLLTTKGT 617
             LT++Q+ ++ + +                          +  +P D  +TY LL     
Sbjct: 591  NLTIIQRVVELIEENHHFKMIPDQLPFDERKACQILAKGKIKKLPEDIQKTYKLLERGDL 650

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIH 675
             G+FQLESSGMRQ +  ++P  IEDI ++++LYRPGP+D   I  + +RK+ +  I   H
Sbjct: 651  EGVFQLESSGMRQIVRDLKPSNIEDISSILALYRPGPLDAGLIPKFIDRKHKRVPIEYEH 710

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            PL++ +L+ET G+++YQEQ+M++AQ L+GYSL +AD+LRRAMGKK   EM KQ+E FI G
Sbjct: 711  PLLESILQETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKLSEMQKQREAFIDG 770

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            ++KNG+SK IA ++F+ +  FA+Y FNKSH+ AY  ++YQTA++K +YPVE++AA +T  
Sbjct: 771  STKNGVSKQIAEHLFDQMLAFAEYCFNKSHSMAYGFVTYQTAYLKANYPVEYMAALLTEN 830

Query: 796  MDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
             DN +K++K+     R   I+++ P VN   VDF   D  I + L+AIK VG T   +I+
Sbjct: 831  SDNTDKVQKYIDSCQRSLKIKVVSPDVNHSNVDFTPSDGEIIFGLSAIKNVGETAIENIL 890

Query: 855  EASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
             A  +   F  L DFCSRV    +N R LESL+  GALD    +R Q ++ L+ +  +AQ
Sbjct: 891  AARKEGGKFSDLPDFCSRVSLHIVNSRALESLIKCGALDSLHQNRKQAIEYLNFLIPWAQ 950

Query: 914  WVEKNRTNKHENIFAH-----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
               K+R     +IF        K T        K    ++  + + E+ +LGFY S HPL
Sbjct: 951  GKAKDREIGQSSIFDLLGDTTTKSTNEGAPKPPKTDDFSTPEKLQFEKELLGFYVSEHPL 1010

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                           ++  A  +G  +++  ++V  ++  T+KG  + ++   + + + E
Sbjct: 1011 QSVIKAYPVEDAITLQDL-AEHKGKKVKVFLVIVEVKRHVTKKGETMAFLKVEDMSGQAE 1069

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 1070 AIVFP 1074


>gi|145594342|ref|YP_001158639.1| DNA polymerase III subunit alpha [Salinispora tropica CNB-440]
 gi|145303679|gb|ABP54261.1| DNA polymerase III, alpha subunit [Salinispora tropica CNB-440]
          Length = 1177

 Score = 1026 bits (2653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1065 (33%), Positives = 556/1065 (52%), Gaps = 52/1065 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YS+L+GA  L ++  ++     PA+A+TD  N+  A +F ++A AAG++P
Sbjct: 4    SFAHLHVHTEYSMLDGAARLKDLFAEVNRQGMPAVAMTDHGNMHGANDFYKQAMAAGVKP 63

Query: 70   IIGCQLDIDMQDNL--KMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            I+G +  +  +     K    G+        +       + +      G   L +L SR 
Sbjct: 64   ILGIEAYVAPESRFHKKRVRWGRPEQKSDDVSGSGGYTHMTIWAKNKVGLHNLFKLTSRS 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF- 178
            +      +  R+    L E  +EGLI  TG  SG +      +    A K    ++ +F 
Sbjct: 124  FTEGFFVKWPRMDTELLAE-HSEGLIATTGCPSGEVQTRLRLDQYDEALKAAAKYQDIFG 182

Query: 179  GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +  ++ +  H    +R    ++ ++++  ++P V TN+S +  +   EAHDVL+ V  +
Sbjct: 183  KENFFLEVMDHGIDIERRVRQELAEISHKLDIPPVVTNDSHYTYQAQSEAHDVLLCVQTA 242

Query: 238  TVVSQKDRPRVTP-DHYLKNRSEMVSIFS-DLPEA-LENTVEIARRCSFILQVH-APILP 293
              V+  +R R     +Y+K+  EM  + S +L  A   NT+ +A             ++P
Sbjct: 243  ANVADPNRFRFDGSGYYIKSADEMRGVDSSELWRAGCRNTLLVAEMVDPAGMFDFRNLMP 302

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            RF   E +     +E+  R +   GL  R   G        + + ++ ++EL VI +M F
Sbjct: 303  RFPVPEGE----TDESWFRKETFKGLARRFPNGV------PETHLKQAEYELGVIIQMGF 352

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL+VADFIQWAK   I VGPGRGS AGS+ AYAL ITD+DPL   L+FERFLNP+R+
Sbjct: 353  PSYFLVVADFIQWAKGEGIAVGPGRGSAAGSLVAYALGITDLDPLPHGLIFERFLNPERV 412

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD DIDF + RR EVI+YV  K+G ++VAQI TFG+++AKAA++D  R L  PY+  D
Sbjct: 413  SMPDVDIDFDERRRGEVIKYVTEKWGEDKVAQIATFGTIKAKAAIKDSARVLGYPYAVGD 472

Query: 474  RLCKLIPND-PAHPVSLQAI--------ADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            R+ K +P       + L  I        A+    R    +DP V ++++ ++ +EGL R 
Sbjct: 473  RITKAMPPAVMGKDIPLTGIFDPQHSRYAEAGEIRGLYESDPDVKKVIDTARGIEGLIRQ 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HAAG+++   P+   +P+ R       +TQF+    E  GL+K DFLGL+ LT++  
Sbjct: 533  TGVHAAGVIMSAEPIVDHIPLMRRDADGAIITQFDYPTCESLGLLKMDFLGLRNLTIIDD 592

Query: 585  SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +L  +    G  VDL  +P DD  TY LL+   TLG+FQL+   MR  L  M+PD  EDI
Sbjct: 593  ALKNIESNHGRTVDLLQLPLDDTATYELLSRGDTLGVFQLDGGPMRSLLRTMKPDNFEDI 652

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQEQVMQ 697
             A+++LYRPGP+  ++   Y  RKNG ++I  IHP +    + +L  T G+I+YQEQV +
Sbjct: 653  SAVLALYRPGPMGANSHTNYALRKNGLQEITPIHPELAEPLEEILGPTYGLIVYQEQVQR 712

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
             AQ+L+GYSL +AD+LRRAMGKK KE +DK+   F  G   N  S      ++++L  FA
Sbjct: 713  AAQVLAGYSLGKADLLRRAMGKKKKEVLDKEFVPFRDGMRANDYSDEAIQTLWDILVPFA 772

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            DY FNK+H A Y ++SY T ++K +YP E++AA +T   D+ +K+  +  + R+  IQ++
Sbjct: 773  DYAFNKAHTAGYGLVSYWTGYLKANYPAEYMAALLTSVGDDKDKMALYLSECRRMGIQVL 832

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKK 876
            PP VNT    F      I + LAAI+ VG      IM        +    DF S+V++  
Sbjct: 833  PPDVNTSAGPFTPVGRDIRFGLAAIRNVGANVVSAIMRCRGEKGAYTDFYDFLSKVEAVV 892

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-----EK 931
             N++ +ESL+ AGA D   +SR  LL    +       V++       ++F       + 
Sbjct: 893  CNKKTIESLIKAGAFDSLDHSRRGLLAVHADAIDAYADVKRKEAVGQYDLFGAGFADSDA 952

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--- 988
            G  +  + +      +   +   E+ +LG Y S HPL   + +L                
Sbjct: 953  GQSTTVMPVIAEGEWDKREKLAFEREMLGLYVSDHPLFGLEHVLGAAADTTIAALSEEGT 1012

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               G  + LA ++   Q++ T++G      T  + A   E  FFP
Sbjct: 1013 VPDGTVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1057


>gi|303235030|ref|ZP_07321654.1| DNA polymerase III, alpha subunit [Finegoldia magna BVS033A4]
 gi|302493885|gb|EFL53667.1| DNA polymerase III, alpha subunit [Finegoldia magna BVS033A4]
          Length = 1161

 Score = 1026 bits (2652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1050 (35%), Positives = 588/1050 (56%), Gaps = 44/1050 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G   +  +LDK+   +  AIAITD  ++F  ++F ++     I+P
Sbjct: 4    TFTHLHVHTEYSLLDGFSPIEKLLDKVEELKMKAIAITDHGSMFGTVKFYKECKKRNIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++    +D+     + K        +VLL    +GY  L+++VS  Y+        
Sbjct: 64   IIGCEIYTTNKDHKIKNPENK----FYNHLVLLAKNQKGYSNLMKIVSLGYVEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+  + L++  +EG+I L+    G +  +        A+      K ++G+  Y+ LQ H
Sbjct: 119  RVDKNTLRKY-SEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNH 177

Query: 190  RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +     + + Q+A   ++ LV TN+  ++ +EDY+ H++L+ +     + + ++   
Sbjct: 178  SSREDMVVMENIPQIAKELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEDNKMSY 237

Query: 249  TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             P + +L++  +M  +F + PEA+ENT +IA  C+  L+     LP F   E        
Sbjct: 238  IPGEFFLRSEEQMKDLFKEYPEAIENTKKIAEMCNVELEFGHLHLPYFAIPEGF----TN 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + L+     GLE R A          Q+ ++R ++EL+VI +M +  YFLIV DFI++A
Sbjct: 294  SSYLKKLVFDGLEKRFAND-----ERLQEAKERCEYELSVIEKMGYVDYFLIVWDFIRFA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K  +IPVGPGRGS AGS+ +Y L ITDI+PL + L+FERFLNP+R+SMPD DIDFC +RR
Sbjct: 349  KSQDIPVGPGRGSAAGSIISYCLEITDINPLDYDLIFERFLNPERVSMPDIDIDFCYERR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI YV NKYG ++VAQI+TFG++ A+ A+RDVGR L M +  VD   K +PN     +
Sbjct: 409  EEVIDYVVNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLLNINI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +++     FR+A   +  V +L+++++++EG+ RH STHAAG+VI   P+ + VP+  
Sbjct: 469  D-KSLEISPEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYVPL-- 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
             +  D  +TQFNM  +E+ GL+K DFLGL+TLT++   + ++ + + + V+   +  +D 
Sbjct: 526  AINKDAVITQFNMTELEELGLLKMDFLGLRTLTVISDCIKYIKKNKNIDVNFEDMNENDP 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +   + T   TLGIFQ ES GMR  L+ ++P   +D+IA  +L+RPGP++ I  Y + K+
Sbjct: 586  KVLSMFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPMNEIPTYIHNKH 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +E +  + PL++ +LK T G I+YQEQVMQI Q ++G+SL EAD LRRAM KK  + M+
Sbjct: 646  NEEDVEYLSPLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKKMKVME 705

Query: 727  KQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              ++ F            I GA + G+ + +A  I++L+  FA Y FNKSH+AAY++++ 
Sbjct: 706  DGRKEFIFGKEDENGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAYSLVAM 765

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +TAW+K +YPVEFLAA ++  M N  +I  + ++AR+ +I+I  P +N     F V DN 
Sbjct: 766  RTAWLKYYYPVEFLAALISSVMGNTSQISLYIEEARRLDIKIEEPDINYSLDKFDVKDNS 825

Query: 835  IYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890
            I Y L AIK VGT      I+  + +  F S  DF  R+   D   +N+R +ESL+ AGA
Sbjct: 826  IIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESLIKAGA 885

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSS 949
                G +R  L+    +I    Q   KN      N+F   E    +D+    +    + S
Sbjct: 886  FSSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNDENDRDDFTRREEFDKS 945

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------RGNNIRLAAMVVS 1003
                 E+ VLG Y S HPL  Y  I+ +       +            G  +++  ++ S
Sbjct: 946  ELLRMEKEVLGIYLSDHPLRAYSSIIDQYSNFSTGDLEDDAYNEKNFDGKRVKVVGIIES 1005

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +K T+    + +V F +     E   FP
Sbjct: 1006 INKKFTKNQKIMEFVKFEDLYGTMELIVFP 1035


>gi|167737755|ref|ZP_02410529.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 14]
          Length = 1103

 Score = 1026 bits (2652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1042 (39%), Positives = 605/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AG
Sbjct: 2    SDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 62   IKPIAGCDVWITNHDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ L
Sbjct: 112  GRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIEL 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R
Sbjct: 172  QRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   + 
Sbjct: 232  QKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ RL         +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 291  ---DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 408  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 468  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 528  DFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 588  LAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 648  IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 708  GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+        
Sbjct: 768  WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGK 827

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      ++ A  +KPF  L DFC R+D + +NRR +E+++ AGA
Sbjct: 828  RSRTIRYGLGAIKGSGQNAIEEVLRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 888  FDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKR 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 945  RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1001

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1002 RGK-MVIALLDDGTGQCEVTVF 1022


>gi|330825578|ref|YP_004388881.1| DNA polymerase III subunit alpha [Alicycliphilus denitrificans K601]
 gi|329310950|gb|AEB85365.1| DNA polymerase III, alpha subunit [Alicycliphilus denitrificans K601]
          Length = 1182

 Score = 1026 bits (2652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1057 (38%), Positives = 590/1057 (55%), Gaps = 59/1057 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   ++  +   A D QPA+A+TD NNLF A++F ++    G++PI
Sbjct: 2    FVHLRLHTEFSVVDGTTRIDEAVKAAAKDGQPALAVTDLNNLFGAVKFYKEGRGKGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++                    +VLLV   +GY  L EL++R +  +  K    
Sbjct: 62   VGAEVCLE-----------GDAGAPPSRMVLLVQNRQGYLNLSELLTRAWTRNVVKNLPL 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
                WL E+  EGLI+L G  +GP+ +A        A    L    +F  R Y+ +QR  
Sbjct: 111  CTWDWLAEL-NEGLIVLAGAQAGPVGQALMKGDDDGAAAVALRLAGIFPHRFYIEIQRAG 169

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D    +  VQLA   +LP+VAT+   F + + YEAH+  + +A   +++   R  R 
Sbjct: 170  RADDEAHVTTAVQLAARLQLPVVATHPVQFATADGYEAHEARVCIAEGEILANPRRVRRF 229

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K+ +EM ++F+D+P A+ NT+EIA+RC+  L +  P LP F       I    E
Sbjct: 230  TREQYFKSGAEMQALFADVPSAIANTLEIAKRCNLTLVLGKPQLPDFPTPGGMAI----E 285

Query: 309  NELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R  +  GL+ RL         +      Y +RL+FEL  I +M F GYFLIV DFIQ
Sbjct: 286  EYFRVASYDGLKERLLHLFPDEAERERQRLRYEERLEFELGTILKMGFPGYFLIVGDFIQ 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 346  WAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQA 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P  
Sbjct: 406  NRDRVIDYVKEKYGKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGQ 465

Query: 486  PVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
              +L               A+  +    E    +  V  ++E++Q+LEG+ R+   HA G
Sbjct: 466  TYTLAYPPEPKKEGDKNNYALELEPMLYERVRKEEDVRTIIEMAQQLEGMTRNIGMHAGG 525

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + DF+  
Sbjct: 526  VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIARDFIRA 585

Query: 592  RGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R    +      +P DD  TY L     T  +FQ ES GM+  L+  +P  +ED+IAL +
Sbjct: 586  RHKGQENFAFENVPLDDAPTYRLFADGMTEAVFQFESRGMQGMLKEARPSRLEDLIALNA 645

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  + NRK+GKE +   HPL++P+L ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 646  LYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM + +  F  GA++ GIS+  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 706  GADMLRRAMGKKKPEEMAEHRLIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVD 827
            Y++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA + F I   PP +N     
Sbjct: 766  YSLLAYHTGWLKVHYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGITFEPPDINRGNYR 825

Query: 828  FKVGDNR-IYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKK 876
            F+   ++ I Y L A+KG G      I+ A              PF SL DFC RVD  +
Sbjct: 826  FEPVTDKVIRYGLGAVKGTGQQAIEAIVAAREGQGVGPQGGTRGPFKSLFDFCVRVDRSR 885

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK----G 932
            +N+R +E+L+ AGA D    +R  L+ S+D    +A     N       +F        G
Sbjct: 886  INKRTVEALIKAGAFDALHLNRAALVASIDRAFDFANAQLANAN--QGGLFDMMGDDAIG 943

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
            + + +  L + +      R   E+  +GFY SGH  D  +  +R+       E   +   
Sbjct: 944  SSTQEPDLVEATPWGIKERLMQEKTAVGFYLSGHLFDEVQQEVRRFVRTPMAELADSRET 1003

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                LA +V   +    ++G         + +   EA
Sbjct: 1004 Q--VLAGIVGDCRVITGQRGKL-ALFKLDDKSGVIEA 1037


>gi|295675964|ref|YP_003604488.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1002]
 gi|295435807|gb|ADG14977.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1002]
          Length = 1196

 Score = 1025 bits (2651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1042 (38%), Positives = 600/1042 (57%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A   G
Sbjct: 5    SDPRFVHLRVHSEFSIADGIVRLDDIVAAAAKDGQGALALTDLGNAFGLVRFYKEARGKG 64

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI GC + I   D+                ++LLV    GY  L EL+S+  L +Q +
Sbjct: 65   VKPIAGCDVWITNPDD----------RDKPSRLLLLVKDRRGYLNLCELLSKASLTNQYR 114

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL+    EGL+ L+G   G I  A    + + A++    + K+F    Y+ L
Sbjct: 115  GRAEIEAGWLETGLGEGLLALSGAQQGDIGLALAAGNEEAAKRNARHWAKVFPGGFYIEL 174

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++   R
Sbjct: 175  QRYGQPGGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRR 234

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + Y + + EM ++F+D+P AL NTV+IA+RC+  L++  P LP F   +   + 
Sbjct: 235  QKRFTSEQYFRTQQEMATLFADIPSALANTVQIAKRCNLTLELGKPKLPLFPTPDGMSL- 293

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RL Q       +      Y QRL+FE   I +M F GYFLIVA
Sbjct: 294  ---DDYLVQLSKEGLEKRLEQLYPDEAERDAQRPTYYQRLEFECGTIIKMGFPGYFLIVA 350

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 351  DFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDID 410

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG   V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 411  FCQHGRDRVIQYVKEKYGANAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 470

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LLE++Q++EGL R+   HA G++I    L+
Sbjct: 471  KPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLT 530

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 531  DFCPLYTQGDDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWS 590

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPGP+D 
Sbjct: 591  LGQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDL 650

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 651  IPSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 710

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM + +E F  GA++NG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 711  GKKKPEEMAQHREIFAEGAARNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 770

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP VN     F+        
Sbjct: 771  WLKAHHPAEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDVNLSAYRFEPVAEADGK 830

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  D  F  + DFC+RVD + +NRR +E+L+ AGA
Sbjct: 831  RSRTIRYGLGAIKGSGQNAIEEILRAREDGRFIDIFDFCNRVDRRIVNRRTIEALIRAGA 890

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QL+ S+    + A+    N       +F       S    L          
Sbjct: 891  FDTLHANRAQLIASVSLAMEAAEQAAANALQ--AGLF-DMGDAPSQGHELVDEPEWPEKR 947

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            + + E+  LGFY SGH  D YK  +R+   +   E      G +  +A ++VS + + T+
Sbjct: 948  KLQEEKAALGFYLSGHLFDAYKDEVRRFVRQKIGEL---KEGRDKLVAGVIVSLRTQMTQ 1004

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1005 RGK-MLIALLDDGTGQCEVTVF 1025


>gi|134093726|ref|YP_001098801.1| DNA polymerase III subunit alpha [Herminiimonas arsenicoxydans]
 gi|133737629|emb|CAL60672.1| DNA polymerase III, alpha subunit [Herminiimonas arsenicoxydans]
          Length = 1153

 Score = 1025 bits (2651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1045 (38%), Positives = 603/1045 (57%), Gaps = 40/1045 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SP F+HL++HS YS+++G + +++++   AAD QP++AITD  NLF  ++F ++A + GI
Sbjct: 3    SPQFIHLRLHSEYSIVDGLVRIDDVIAAAAADAQPSLAITDLANLFGMVKFYKEARSKGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+GC + I   ++                ++LLV    GY +L EL+S+ +L +  + 
Sbjct: 63   KPIVGCDVWISNDND----------RDKPSRLLLLVKNKTGYLQLCELLSKAWLTNLHRG 112

Query: 128  SVRICLSWLQEIG----TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
               I   WL+++       GLI+L+G   G I  A    +   AE+    +  +F    Y
Sbjct: 113  RAEIRPEWLEQLAAEGKPNGLIVLSGAHFGDIGMAIDNGNLAAAERHAKRWADMFPGHFY 172

Query: 184  VNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +QR    +      Q   LA    LPLVAT+   FL + ++ AH+    ++   +++ 
Sbjct: 173  IEVQRAEQPNMDAHVRQASVLAAKLNLPLVATHPVQFLDQNEFTAHEARTCISEGEILAN 232

Query: 243  KDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              R  R         ++EM  +F+D+P AL+N+VEIA+RC+ +L++  P LP F   +  
Sbjct: 233  PRRIKRFNERQRFTTQAEMAELFADMPNALQNSVEIAKRCNLMLELGKPKLPNFPTPDGS 292

Query: 302  DIQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
             I    +  L  +A  GLE RL         +  + + Y+ RL FE + I  M F GYFL
Sbjct: 293  SI----DEFLVKEAQRGLEGRLQHLYPDPEQREKNRERYQARLKFETDTIIHMGFPGYFL 348

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF
Sbjct: 349  IVADFIKWAKNNGVPVGPGRGSGAGSLVAYSLLITDLDPLQYNLLFERFLNPERVSMPDF 408

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFCQ+ RD VI+YV+++YG + V+QI TFG++ AK A+RDVGR L   Y+  D + KL
Sbjct: 409  DIDFCQEGRDRVIQYVKDQYGKDAVSQIATFGTMAAKGAVRDVGRVLDFGYNFCDGISKL 468

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP  P   V++  AI ++    E    +  V +LLE++QK+EG+ R+   HA G++I   
Sbjct: 469  IPFKPGKLVTIADAIKEEPLLAERLENEEEVKQLLELAQKVEGIARNIGMHAGGVLIAPG 528

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
             L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L +++ ++      + 
Sbjct: 529  KLTDFCPLYTQGGDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIKDLDPAMA 588

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               L  +P +D  +Y LLT   T+ +FQLES GM+  L+  +PD  EDIIALV+LYRPGP
Sbjct: 589  DFSLEKLPLNDRPSYDLLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGP 648

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RK+G E+     P  + +L ET G+++YQEQVMQ+AQ++ GYSL  AD+LR
Sbjct: 649  MDLIPDFCRRKHG-ERFEYPDPRTEAILSETYGIMVYQEQVMQMAQVIGGYSLGGADLLR 707

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM + +E F +GA+KN +S   A  IF+L+ KFA YGFNKSHAAAYA++SY
Sbjct: 708  RAMGKKKAEEMAQHRELFRAGAAKNDLSAEKADEIFDLMEKFAGYGFNKSHAAAYALLSY 767

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVG-- 831
             TA++K H+P  F+AA+++L MD+ +KIK   +D      + ++PP +N     F     
Sbjct: 768  HTAYLKAHHPAAFMAANLSLAMDDTDKIKILVEDTLDVCGLTLLPPDINQSDYRFTPVGV 827

Query: 832  ----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                  +I Y L A+KG G      I+ A   KPF  L DFC RVD +++NRR ++SL+ 
Sbjct: 828  PGKKATQIRYGLGAVKGSGKGAIDAIVNARQGKPFVDLFDFCKRVDKRQINRRTIDSLIR 887

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGA DCF   R  LL S+    + A+  E   +    ++F  +           K S  +
Sbjct: 888  AGAFDCFNIDRAVLLASVGFAMECAEQAE--ASANQVSLFGGDDSDMETPPEYVKASPWS 945

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
               +   E+  LGFY SGH  D Y   +R+           +       +A ++   + +
Sbjct: 946  DKQKLTEEKAALGFYLSGHLFDAYAEEVRRFARTKLSNLEPSREPR--TIAGVISGVRTQ 1003

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G R+  VT  + +   +   +
Sbjct: 1004 MTQRG-RMIIVTLDDGSATVDVTVY 1027


>gi|163744574|ref|ZP_02151934.1| DNA polymerase III, alpha subunit [Oceanibulbus indolifex HEL-45]
 gi|161381392|gb|EDQ05801.1| DNA polymerase III, alpha subunit [Oceanibulbus indolifex HEL-45]
          Length = 1161

 Score = 1024 bits (2648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 501/1052 (47%), Positives = 672/1052 (63%), Gaps = 59/1052 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +LEGAL L  +         PA+A+TD+NN+F+ALEFS     AG+QPIIGCQ+D+   +
Sbjct: 1    MLEGALRLKKLPGMCRDAGMPALALTDSNNMFAALEFSVAMAGAGVQPIIGCQVDVAYVE 60

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                   G+ P P  P +VLL  +  GY+ L++L S +YL D+G     + L  L E  +
Sbjct: 61   ----VQPGEKPRPPAP-VVLLAQSELGYENLMKLNSCLYL-DKGGAVAEVTLDEL-EALS 113

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR------GYDRY 195
              +I LTGG  GP+           AE  +   K  FGDRLYV LQRH         +R 
Sbjct: 114  ADIICLTGGPMGPVGMLLQGGQRPAAETLMARLKAAFGDRLYVELQRHPVDGGQPEPERL 173

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYL 254
             E   V++AY  ++PLVATN+  F   + YEAHD L+ ++    V Q+  R R+T  HY 
Sbjct: 174  TERGFVEMAYAMDIPLVATNDVYFPKPDMYEAHDALICISEGAYVDQQQPRRRLTAQHYF 233

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
            K+++EM ++F+DLPEAL NTVEIA+RC+F+     PILP+F + E          ELR  
Sbjct: 234  KSQAEMATLFADLPEALSNTVEIAKRCAFMAYRRDPILPKFADDEV--------AELRRM 285

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
            A  GL+ RLA   I      +DY++RLDFEL +I  M F GYFLIVADFIQWAK NNIPV
Sbjct: 286  ANEGLKARLA--VIPHAVSVEDYQKRLDFELGIIEGMGFPGYFLIVADFIQWAKDNNIPV 343

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
            GPGRGSGAGS+ AYALT+TD+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVIRYV
Sbjct: 344  GPGRGSGAGSLVAYALTVTDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYV 403

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIA 493
            Q KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K+IP +   PVS+ +A+A
Sbjct: 404  QEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALA 463

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            D+ R RE    +  V RLL   Q++EGL R+ASTHAAG+VIGDRPL QLVP+Y+D RSD+
Sbjct: 464  DEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGDRPLDQLVPLYQDPRSDM 523

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA------------------QRGVK 595
            P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D +                     G  
Sbjct: 524  PATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKAGGRHLHIAADGTEIYQPPEGHI 583

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             D++ IP DD  TY L ++  T+ +FQ+ESSGM  AL+ M+P CIEDI+ALV+LYRPGP+
Sbjct: 584  DDIATIPLDDKATYKLYSSAKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPM 643

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            +NI  Y   KNG+ ++ S+HP ID +L+ETQG+I+YQEQVMQIAQ+++GYSL  AD+LRR
Sbjct: 644  ENIPTYCEVKNGQRELESVHPSIDYILEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKKI EEM K++ +F  GA  NG+ K  A  +F+LL KFA+YGFNKSHAAAYAV+SYQ
Sbjct: 704  AMGKKIAEEMAKERPKFEKGAMANGVDKKKAAEVFDLLEKFANYGFNKSHAAAYAVVSYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR 834
            TAW+K ++PVEF+A  M  ++   +K+  + ++ R +  +  +PP VN     FKV D  
Sbjct: 764  TAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKRLELPWVPPCVNRSDASFKVVDGA 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA----DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            + Y+L A+K VG    R + E       DKPF +L D   RVD K++ +R LE LV +GA
Sbjct: 824  LVYALGALKNVGLEAMRLVTEGRKVEGVDKPFATLYDLARRVDLKRVGKRPLEMLVRSGA 883

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R ++ QSLD +  Y+  + + + +   ++F        +   L       S+ 
Sbjct: 884  FDQLDSNRRRVFQSLDGLVSYSAAIHEQKASNQVSLFGEAGDDLPEPRMLP-CDDWQSAE 942

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRK-------MGIKGYEESVATIRGN---NIRLAAM 1000
            R   E + +GFY SGHPLD Y   LR+       +     +E    +      N RLA +
Sbjct: 943  RLAEEFKAVGFYLSGHPLDDYMVPLRRKWARETGLPFLTLDELTEKVSTRGAMNARLAGV 1002

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V  +Q++K+ +G+R  +   S+    YE   F
Sbjct: 1003 VAGRQERKSARGNRFAFAQLSDTTGGYEVTLF 1034


>gi|309812629|ref|ZP_07706373.1| putative DNA polymerase III subunit alpha [Dermacoccus sp. Ellin185]
 gi|308433324|gb|EFP57212.1| putative DNA polymerase III subunit alpha [Dermacoccus sp. Ellin185]
          Length = 1182

 Score = 1024 bits (2648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1071 (34%), Positives = 560/1071 (52%), Gaps = 54/1071 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             +S SFVHL  H+ YS+L+GA  ++++  +      PAIA TD   LF A EF  K+   
Sbjct: 3    SQSKSFVHLHNHTEYSMLDGAARIDDMFARAQEFGMPAIATTDHGYLFGAYEFWSKSRKY 62

Query: 66   GIQPIIGCQLDIDMQD------NLKMTNQGKTPFPT-----VPSIVLLVSTAEGYQRLIE 114
             ++PIIG +  +                +G+             + LL    EG   L  
Sbjct: 63   DVKPIIGLEAYMTPGTHRTDKTRTTWGERGQEADDVSNRGLYTHMTLLAKNNEGMHNLFR 122

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            + S+  L     +  R+    L   G  G+I  TG  SG I           A +    F
Sbjct: 123  MGSQASLDQVYSKYPRLDRELLNAYG-TGIIGTTGCPSGEIQTRLRLGQYDKAREAAAEF 181

Query: 175  KKLFGD-RLYVNLQRHR---GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            + +FGD   Y  L  H      +R   S +++LA    LPL+ATN+  + ++ED   HD 
Sbjct: 182  RDIFGDGNFYCELMEHDLDVDIERRVRSDLLKLAKDLNLPLLATNDLHYTNKEDAVHHDA 241

Query: 231  LMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
            L+ +   + ++  +R +  + + YLK+  EM  +F D P+A +NT+ IA +C        
Sbjct: 242  LLCINSGSRLTDPNRFKFGSHEFYLKSADEMRHLFRDHPDACDNTLLIAEQCEVSFTEGE 301

Query: 290  P-ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +PRF   E +D    E +    +   GL  R  +G            ++  +E +VI
Sbjct: 302  GRYMPRFPCPEGED----ETSWFIKEVETGLRRRFPEGVPDYAV------KQAKYEQDVI 351

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
                + GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD+DP+   L+FERFL
Sbjct: 352  IGKGYPGYFLVVADFINWAKRNGIRVGPGRGSGAGSMCAYAMGITDLDPVPHGLIFERFL 411

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R SMPDFD+DF + RR EVIRYV +KYG +RV+ I+T+G+++AK A++D  R +  P
Sbjct: 412  NPERQSMPDFDVDFDERRRSEVIRYVVDKYGEDRVSYIVTYGTIKAKQAVKDASRVMDFP 471

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            ++  +++ K +P D     V L  + D+S         FRE   +DP+   + +    LE
Sbjct: 472  FAIGEQMTKAMPADVMGKGVPLAKMYDESHPRYAEGGEFRELIASDPTFKNIFDAGVGLE 531

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++   PL  ++P+ R ++    +TQF+    E  GL+K DFLGL+ L
Sbjct: 532  GLKRQWGVHAAGVIMSSEPLIDVIPIMRRLQDGAVITQFDYPSCETLGLVKMDFLGLRNL 591

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            T+L  +L  +   R   +DL  +  D  D +TY LL    TLG+FQL+  GMRQ L  MQ
Sbjct: 592  TILDDALKNIKANRDEDIDLDALSKDMTDAKTYDLLARGDTLGVFQLDGGGMRQLLRLMQ 651

Query: 637  PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVII 690
            PD  EDI A ++LYRPGP+  +    +  RKNGK++I  IHP +    +P+L  T G+II
Sbjct: 652  PDNFEDISAALALYRPGPMGANAHTNFALRKNGKQQIDYIHPELTEALEPILNMTYGLII 711

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVM+IAQ L+GY+L  AD+LRRAMGKK KE +D +   F  G   NG SK     ++
Sbjct: 712  YQEQVMEIAQKLAGYTLGNADLLRRAMGKKKKEVLDAEYVNFEKGMLDNGFSKESVQTLW 771

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
             +L  F+DY FNK+H AAY ++SY T ++K +YP E++AA +T   D+ +K   +  + R
Sbjct: 772  SILLPFSDYAFNKAHTAAYGLVSYWTGYLKANYPAEYMAALLTSVRDDKDKSALYLNECR 831

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFC 869
               I+++PP VN    +F      I + L AI+ VG+     I+ A  +   F S EDF 
Sbjct: 832  HMGIKVLPPDVNESIGNFAAVGEDIRFGLEAIRNVGSNVVAAIIAAREEKGRFTSFEDFL 891

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA- 928
             +  +  LN+R +ESLV AGA D  G+ R  L+Q  ++        ++   +  +++FA 
Sbjct: 892  RKCPATVLNKRTVESLVKAGAFDDLGHQRQGLVQIHESYVDALIDEKRKEEHGQDSLFAG 951

Query: 929  -HEKGTFSDKITLEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
              +     +   L +      +   +   E+ +LG Y S HPL   +  L +        
Sbjct: 952  FGDDAPGIEFAALPQIPPIEWDKQTKLAFEREMLGLYVSDHPLFGIEAALAQFSDTSVAR 1011

Query: 986  SV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +   A   G  + +A ++   Q K+T+KG      T  +     E  FFP
Sbjct: 1012 LLAEDALPDGATVTIAGLITGLQIKRTKKGDLWAIATVEDMDGAIECLFFP 1062


>gi|319763344|ref|YP_004127281.1| DNA polymerase iii, alpha subunit [Alicycliphilus denitrificans BC]
 gi|317117905|gb|ADV00394.1| DNA polymerase III, alpha subunit [Alicycliphilus denitrificans BC]
          Length = 1182

 Score = 1024 bits (2648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1057 (38%), Positives = 591/1057 (55%), Gaps = 59/1057 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   ++  +   A D QPA+A+TD NNLF A++F ++    G++PI
Sbjct: 2    FVHLRLHTEFSVVDGTTRIDEAVKAAAKDGQPALAVTDLNNLFGAVKFYKEGRGKGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++                    +VLLV   +GY  L EL++R +  +  K    
Sbjct: 62   VGAEVCLE-----------GDAGAPPSRMVLLVQNRQGYLNLSELLTRAWTRNVVKNLPL 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
                WL E+  EGLI+L G  +GP+ +A        A    L    +F  R Y+ +QR  
Sbjct: 111  CTWDWLAEL-NEGLIVLAGAQAGPVGQALMKGDDDGAAAVALRLAGIFPHRFYIEIQRAG 169

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D    +  VQLA   +LP+VAT+   F + + YEAH+  + +A   +++ + R  R 
Sbjct: 170  RADDEAHVTTAVQLAARLQLPVVATHPVQFATADGYEAHEARVCIAEGEILANQRRVRRF 229

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K+ +EM ++F+D+P A+ NT+EIA+RC+  L +  P LP F       I    E
Sbjct: 230  TREQYFKSGAEMQALFADVPSAIANTLEIAKRCNLTLVLGKPQLPDFPTPGGMAI----E 285

Query: 309  NELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R  +  GL+ RL         +      Y +RL+FEL  I +M F GYFLIV DFIQ
Sbjct: 286  EYFRVASYDGLKERLLHLFPDEAERERQRLRYEERLEFELGTILKMGFPGYFLIVGDFIQ 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 346  WAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQA 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P  
Sbjct: 406  NRDRVIDYVKEKYGKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGQ 465

Query: 486  PVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
              +L               A+  +    E    +  V  ++E++Q+LEG+ R+   HA G
Sbjct: 466  TYTLAYPPEPKKEGDKNNYALELEPMLYERVRKEEDVRTIIEMAQQLEGMTRNIGMHAGG 525

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + DF+  
Sbjct: 526  VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIARDFIRA 585

Query: 592  RGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R    +      +P DD  TY L     T  +FQ ES GM+  L+  +P  +ED+IAL +
Sbjct: 586  RHKGQENFAFENVPLDDAPTYRLFADGMTEAVFQFESRGMQGMLKEARPSRLEDLIALNA 645

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  + NRK+GKE +   HPL++P+L ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 646  LYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM + +  F  GA++ GIS+  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 706  GADMLRRAMGKKKPEEMAEHRLIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVD 827
            Y++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA + F I   PP +N     
Sbjct: 766  YSLLAYHTGWLKVHYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGITFEPPDINRGNYR 825

Query: 828  FKVGDNR-IYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKK 876
            F+   ++ I Y L A+KG G      I+ A              PF SL DFC RVD  +
Sbjct: 826  FEPVTDKVIRYGLGAVKGTGQQAIEAIVAAREGQGVGPQGGTRGPFKSLFDFCVRVDRSR 885

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK----G 932
            +N+R +E+L+ AGA D    +R  L+ S+D    +A     N       +F        G
Sbjct: 886  INKRTVEALIKAGAFDALHLNRAALVASIDRAFDFANAQLANAN--QGGLFDMMGDDAIG 943

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
            + + +  L + +      R   E+  +GFY SGH  D  +  +R+       E   +   
Sbjct: 944  SSTQEPDLVEATPWGIKERLMQEKTAVGFYLSGHLFDEVQQEVRRFVRTPMAELADSRET 1003

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                LA +V   +    ++G         + +   EA
Sbjct: 1004 Q--VLAGIVGDCRVITGQRGKL-ALFKLDDKSGVIEA 1037


>gi|225875019|ref|YP_002756478.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC
            51196]
 gi|225792178|gb|ACO32268.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC
            51196]
          Length = 1173

 Score = 1024 bits (2648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1058 (39%), Positives = 607/1058 (57%), Gaps = 48/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  +  ++  +A+  Q ++AITD  N++ A+ F + A   GI+PI
Sbjct: 4    FTHLHLHTDYSLLDGACDVEKLVGHVASIGQTSVAITDHGNIYGAVHFFEAAKKKGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+L I  +++ +   QG         +++L  + EGY+ L+ + S   L     +  R
Sbjct: 64   LGCELYICQKEDHRADPQG----DDYNHLLVLAESEEGYRNLVRITSEASLHG-FYRKPR 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            I   +L E    GLI  +G  +G   +    ++ Q A      ++ +F     ++ +Q  
Sbjct: 119  ISKKYLAE-HAAGLIGFSGCLAGEFCQNLMADNYQAARATAAQYQDIFGRGNFFLEIQDQ 177

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                ++   + + +L    ++PLVATN+S +L E+D+ AHDVL+ V  +  +    R + 
Sbjct: 178  GLELEKKIHADMFRLEKDLDIPLVATNDSHYLCEDDHHAHDVLLCVQTAGSIHDPKRFKF 237

Query: 249  TPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D +  K+ +EM  +F   PE +  T++ A RC+  L       P F       I    
Sbjct: 238  DSDQFYVKSAAEMERLFPHAPEVVSRTMQFAERCNLKLNKVDNPFPEFAVPPGHTI---- 293

Query: 308  ENELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            ++   +    G + RL       Q          DY  RL+ E+ +I +MKFSGYFLIV 
Sbjct: 294  DSYFEHVCREGFKKRLDTAIRHLQDRGILRSPISDYEARLEREIGIIKQMKFSGYFLIVW 353

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++AK ++IPVGPGRGS AGS+  Y + ITDIDPL+  LLFERFLNP+R+SMPD DID
Sbjct: 354  DFIRYAKDHDIPVGPGRGSAAGSLVGYVMEITDIDPLQNVLLFERFLNPERVSMPDIDID 413

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR EVI YV  KYG E+VAQIITF ++ AKAA++DVGRAL MPY  VDR+ K+IP 
Sbjct: 414  FCMNRRGEVIEYVTRKYGREQVAQIITFNTMAAKAAIKDVGRALDMPYGDVDRIAKMIPA 473

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  QA+ D  + +EA   +  +  L++ +++LEGL R A  HAAG+VI  RPL+ 
Sbjct: 474  TIGVTID-QALTDSPQLQEAYEGNTQIRELIDTAKRLEGLVRGAGVHAAGVVIAPRPLTD 532

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            LVP+ R  ++D  VT ++MK +EK GL+K DFLGL TLT++   L  + + RG  VD++ 
Sbjct: 533  LVPLSR-SKNDEIVTAYDMKAVEKMGLLKMDFLGLTTLTVIDDCLKMIRKNRGETVDMAK 591

Query: 601  IPFDDHETYHL-LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            +P DD ETY        T G+FQ ES GMR  L   +P C+ED+ AL +LYRPGPI   +
Sbjct: 592  VPLDDQETYERVFHRALTSGVFQFESGGMRDVLRRYKPTCVEDLTALNALYRPGPIQGGM 651

Query: 660  --VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
               +  RK G+ K+    P ++ +LKET GVI+YQEQVMQIA +L+GYSL EAD+LRRAM
Sbjct: 652  IDDFIERKWGRRKVEYELPPLETILKETLGVIVYQEQVMQIANVLAGYSLGEADLLRRAM 711

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM KQ++RF+SGA +    K   V IF+L+ +FA YGFNKSH+AAYA+++Y TA
Sbjct: 712  GKKNPEEMAKQRDRFVSGALEREFPKDKIVKIFDLMEQFAGYGFNKSHSAAYALLAYHTA 771

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+KTHYPVEF+AA +T E+   E + K+ Q+ R+  I + PP V     DF      I +
Sbjct: 772  WLKTHYPVEFMAALLTSEISKPENVVKYIQECREIEIPVEPPDVLFSDADFTPHGKSIRF 831

Query: 838  SLAAIKGVGTTTARHIMEAS-----ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             L AIK VG      I++A        K F +  +FC +VD + +N+RV+ESL+ AGALD
Sbjct: 832  GLTAIKNVGRNAIDSILDARGKLAAEGKSFQNFWEFCEKVDLRLMNKRVIESLIKAGALD 891

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH----EKGTFSDKITLEKFSVENS 948
             FG  R QL+ S+D   + AQ  +++       +F         + S    L        
Sbjct: 892  SFG-RRAQLMASVDKAIERAQKAQRDEAAGQSGLFGLFDADAPASASPADDLPNVPDWEE 950

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVAT-------IRGN----NIR 996
            ++R ++E+ VLGF+ SGHPLD Y   LR + GI     ++          RG      I 
Sbjct: 951  ALRLQSEKEVLGFFVSGHPLDRYAEKLRNLPGIIDTATALEMKPAPPTGRRGQSNENEIA 1010

Query: 997  LAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
            +A M+V  +  K+++ G      +  +   + +   FP
Sbjct: 1011 IAGMIVGLKVAKSKRSGDLYAQASLEDATGKIDLICFP 1048


>gi|291285989|ref|YP_003502805.1| DNA polymerase III, alpha subunit [Denitrovibrio acetiphilus DSM
            12809]
 gi|290883149|gb|ADD66849.1| DNA polymerase III, alpha subunit [Denitrovibrio acetiphilus DSM
            12809]
          Length = 1179

 Score = 1024 bits (2648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1048 (37%), Positives = 605/1048 (57%), Gaps = 33/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKAC 63
            +  S  FVHL +H+ YSLL+GA+ + +++ KI      P + I+D   +   ++F ++A 
Sbjct: 1    MNNSKDFVHLHLHTQYSLLDGAILVGDLMQKIKEKGMTPMVGISDHGTMHGIVDFYRQAR 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            A  I+PI+GC++ +        T +          +VL     +G   L +LVS      
Sbjct: 61   ANDIKPILGCEVYVAPDSRFNTTYE--RGQERNHHLVLQAVNNKGLSNLQKLVSLAQFEG 118

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRL 182
                  R+    + +  +EGLI ++   +G I R    +    A      ++ +F  D  
Sbjct: 119  -FHYKPRVDKEIMAQY-SEGLIAMSACLAGEIPRKIIRDQYDEAVAAAHEYRDIFGKDNF 176

Query: 183  YVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ +Q +   ++      +++++    +PLVATN+  +L++ D+ +H+VL+ +   + ++
Sbjct: 177  FLEIQENGIEEQLMVNRNIIKMSRDSGIPLVATNDCHYLNKGDHLSHEVLICIQTQSTIN 236

Query: 242  QKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              +R  +  D  ++K   EM + F ++P+AL NTVEIA RC+  +      LP +   E 
Sbjct: 237  SPNRFEIHSDQLWVKTPEEMWAAFGEVPDALTNTVEIANRCNTSITFGELHLPEYEVPEG 296

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                    + L + A  GL  +LA+    K    Q Y  R+  E +VI    F+GYFLIV
Sbjct: 297  ----YTISSYLEHLARKGLHEKLAKIPSEKH---QIYYDRMQKEFDVIIGKNFAGYFLIV 349

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DF+ +++   IPVGPGRGSGAGS+ AY+L ITD+DP+ F+LLFERFLNP+R SMPDFDI
Sbjct: 350  WDFMNYSRSVGIPVGPGRGSGAGSLVAYSLGITDLDPIYFNLLFERFLNPERSSMPDFDI 409

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC   R++VI+YV+ KYG +RV+QIITFG L  ++ +RDVGR L++P   VD+L K IP
Sbjct: 410  DFCVKGREQVIKYVREKYGDDRVSQIITFGKLLGRSTVRDVGRVLEVPLPIVDKLAKAIP 469

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +DP   +  +A+  D   R+   A    + +L  + KLEGL R+   HAAGIVI D+PL+
Sbjct: 470  SDPGMTLR-KALKKDEDLRKVFQAAEQGELILNHAVKLEGLVRNTGMHAAGIVISDKPLN 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
            + VP+ R   +++ + QF    +E  GL+KFDFLGL  LT++ +++  + + RG  +D++
Sbjct: 529  EYVPLCRGQNNEV-IAQFEKDTLESVGLVKFDFLGLNNLTIIDEAIKQIKKNRGEDLDIA 587

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP D+ + Y LL+   T  +FQLESSGM+  L+ ++P+  EDIIALV+LYRPGP+++ +
Sbjct: 588  SIPLDNKKVYELLSRGDTTAVFQLESSGMKNLLKKLRPEQFEDIIALVALYRPGPMESGM 647

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +  +  RK G+E+I  I P ++ +LKET+GV+IYQEQVMQIAQ++ GYSL  AD LRRAM
Sbjct: 648  LDSFVKRKYGEEEIDYIFPDLEEILKETRGVVIYQEQVMQIAQIIGGYSLGSADNLRRAM 707

Query: 718  GKKIKEEMDKQKERF-------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            GKK   EM+KQK+ F       I GA   G    +A ++F+ LAKFA YGFNKSH+AAYA
Sbjct: 708  GKKKAAEMEKQKQFFLYGDGDTIPGAKARGYDMKMAEDLFDKLAKFAGYGFNKSHSAAYA 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +ISYQTA++K  YPVE++AA ++ E+D  +KI  F ++ +   I ++PP++N   V+F++
Sbjct: 768  LISYQTAYLKALYPVEYMAAILSCEIDKGDKIVTFTEECKNMGIDVLPPNINKSGVNFEI 827

Query: 831  GDNRIYYSLAAIKGVGTTTAR-HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                I++ L AIK VG       + E   +  F ++ DFC RVD +  N+RVLESLV AG
Sbjct: 828  EGTAIHFGLGAIKNVGFNAIEAALQERDKNGEFKNIYDFCERVDLRACNKRVLESLVKAG 887

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVE 946
            A DC G +R Q LQ ++   +  Q   K       +I A    E+    ++         
Sbjct: 888  AFDCSGKNRRQNLQVIERALEEGQRKHKMAEQGIMSIEAFLVDEESDEEEQFFFPDVEEM 947

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
              +   + E+ VL FY S HPL +Y  IL+   I    E        +I +  +V   ++
Sbjct: 948  PENELLKMEKEVLDFYISNHPLAIYNNILKTFTI-PIGEVANPDSEGDIVIGGLVKHVKR 1006

Query: 1007 KKT-RKGSRIGWVTFSEPAKEYEANFFP 1033
              T +KG ++ +    +   E E   FP
Sbjct: 1007 IVTKKKGEKMAFANVEDMDSEVEVVVFP 1034


>gi|284991667|ref|YP_003410221.1| DNA polymerase III subunit alpha [Geodermatophilus obscurus DSM
            43160]
 gi|284064912|gb|ADB75850.1| DNA polymerase III, alpha subunit [Geodermatophilus obscurus DSM
            43160]
          Length = 1185

 Score = 1024 bits (2647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1071 (34%), Positives = 556/1071 (51%), Gaps = 56/1071 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S SFVHL VH+ YS+L+GA  L  +    A    PA+A+TD  N+F A +F ++A AAG
Sbjct: 5    SSDSFVHLHVHTEYSMLDGAAKLPEVTKAAAEQGMPALAMTDHGNVFGAYDFYKQAKAAG 64

Query: 67   IQPIIGCQLDIDMQDNLKM--------------TNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            ++PIIG +                                      + LL  T EG   L
Sbjct: 65   VKPIIGMEGYYTPGSRFDRAPFDFGENLIDEDGEGGSSRGKAAYTHMTLLARTTEGMHNL 124

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
              + S   L  Q  +  R     L+  G  GLI  TG  SG ++          A +   
Sbjct: 125  FRISSMASLEGQ-YRKPRFDRDLLERYG-TGLIATTGCPSGEVNMWLRAGKHDRARQAAA 182

Query: 173  TFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             F+ +F  +  Y  +  H    ++     ++++A    +PL+ TN+  +   ED EAHD 
Sbjct: 183  DFQDIFGKENFYAEVMDHGLAIEKKTRPALLEIAKELGIPLLGTNDLHYTHREDAEAHDA 242

Query: 231  LMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
            L+ +   + +++ +R +   D +YLK+ +EM ++FS+LPEA +NT+ +A +C       A
Sbjct: 243  LLCIQTGSRLNETNRFKFNGDGYYLKSAAEMRALFSELPEACDNTLLVAEQCEVEFTEGA 302

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
             ++PRF     +D    E +    +   GL  R   G           R++ D+E+ +I 
Sbjct: 303  DLMPRFPLPPGED----ETSWFIKEVERGLHKRWPGGI------PDHVRKQADYEVGIIT 352

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DPL   L+FERFLN
Sbjct: 353  QMGFPGYFLVVADFINWAKDNGIRVGPGRGSAAGSLAAYAMGITDLDPLAHGLIFERFLN 412

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPD DIDF   RR EVI+YV  KYG ERV+QI+T+G+++AKAA++D  R L  PY
Sbjct: 413  PERVSMPDVDIDFDDRRRGEVIQYVSQKYGEERVSQIVTYGTIKAKAAIKDAARVLDRPY 472

Query: 470  SQVDRLCKLIPND-PAHPVSLQA--------IADDSRFREARLADPSVDRLLEISQKLEG 520
            S  D L KL+P D     + L            + + FR    +DP    +++ ++KLEG
Sbjct: 473  SVGDELTKLMPPDVMGKGIPLSGVFDPAHPRYKEAAEFRARYESDPGAAEVVDQARKLEG 532

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R    HAAG++IG  PL   +P+ R       +TQF+    E  GL+K DFLGL+ LT
Sbjct: 533  LKRQWGVHAAGVIIGRYPLIDSIPIMRREADGAVITQFDYPTCETLGLLKMDFLGLRNLT 592

Query: 581  LLQKSLDFL---AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            ++  +L  +    +  + +D       D  TY LL+   TLG+FQ +   MR  L  M+P
Sbjct: 593  VIDDALRNIVANGKEPIDLDEISKDLTDPATYALLSRGDTLGVFQFDGGPMRSLLRLMRP 652

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIY 691
            D  EDI A+ +LYRPGP+  ++   Y  RKNG+++I  IHP +    + +L  T G+I+Y
Sbjct: 653  DNFEDISAVGALYRPGPMGANSHTNYALRKNGQQEITPIHPELAEPLEDILGTTYGLIVY 712

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVM IAQ ++GYSL +AD+LRRAMGKK K  +D +   F +G  + G S      +++
Sbjct: 713  QEQVMAIAQKVAGYSLGKADLLRRAMGKKKKSVLDAEFVGFEAGMKERGFSDAAIKTLWD 772

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +L  FADY FNK+H+AAY ++SY TA++K +YP E++A  +T   D+ ++   +  + R+
Sbjct: 773  ILVPFADYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDRRPIYLAECRR 832

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
              I+++PP VN    DF      I + LA+++ VG      I  A  +   F    DF  
Sbjct: 833  MGIKVLPPDVNESSWDFTAVGTDIRFGLASVRNVGHNVVDSIRRAREEKGAFKDFADFMR 892

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            ++D+   N++V+ESL  AGA D  G+SR  ++         A  +++       ++F   
Sbjct: 893  KIDTVACNKKVIESLAKAGAFDSLGHSRQGIVAVHAQAVDSAMALKRREAEGQFDLFGSF 952

Query: 931  KGTFSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                +D             +  + S R   E+ +LG Y S HPL   + +L         
Sbjct: 953  GDEGADDPFSGALDIAIPTADWSKSERLVFERDMLGLYVSDHPLHGVEHVLAANADTPIA 1012

Query: 985  ESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            E  A     G N+ +A ++ S   +  ++G+     T  +     E  FFP
Sbjct: 1013 EINAGGVEDGANVTIAGILTSVAPRTNKQGAPWAIATLEDLESGIEVLFFP 1063


>gi|224418173|ref|ZP_03656179.1| DNA polymerase III subunit alpha [Helicobacter canadensis MIT
            98-5491]
 gi|253827500|ref|ZP_04870385.1| DNA polymerase III, alpha subunit [Helicobacter canadensis MIT
            98-5491]
 gi|313141708|ref|ZP_07803901.1| DNA polymerase III subunit alpha [Helicobacter canadensis MIT
            98-5491]
 gi|253510906|gb|EES89565.1| DNA polymerase III, alpha subunit [Helicobacter canadensis MIT
            98-5491]
 gi|313130739|gb|EFR48356.1| DNA polymerase III subunit alpha [Helicobacter canadensis MIT
            98-5491]
          Length = 1171

 Score = 1024 bits (2647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1061 (35%), Positives = 598/1061 (56%), Gaps = 46/1061 (4%)

Query: 5    LEKSP--------SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL 56
            + K+P        SF HL +H+ YSLL+G   +  +  +I      ++AITD  N+F A+
Sbjct: 1    MSKTPNEIITPQISFTHLHLHTEYSLLDGLNKIKVLAKRIKELGMDSVAITDHGNMFGAI 60

Query: 57   EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            EF +     GI+PI+G +  +   + +   +  +        + L     EGY+ L+ L 
Sbjct: 61   EFYKAMKEQGIKPILGMEAYLHNAEEISDKSNQR------FHLCLYAKNLEGYKNLMYLS 114

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA--------FFFNSSQVAE 168
            S+  L        RI    L+E  + GLI  +   +G +                 + A+
Sbjct: 115  SQACLYG-YYMKPRISKKMLRE-HSAGLICSSACLNGEVQWHLNVKKDDNKGRKGYERAK 172

Query: 169  KRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +  L ++ +FG+  Y+ L RH   ++   ++Q++Q++    + ++ATN++ +  + D  A
Sbjct: 173  EVALEYQDIFGEDFYLELMRHGIEEQQLIDNQILQISLETGIKIIATNDTHYTKQSDSTA 232

Query: 228  HDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
             +V   +      +  +R R T  + Y+K+  EM  +++D PEAL NT EIA +C+  L 
Sbjct: 233  QEVAFCIGFGKDFNDPNRMRHTVQEFYIKSPEEMAQLYADFPEALANTQEIANKCNLELH 292

Query: 287  VHAPILP------RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            +  P  P       + + E  D  ++ E     K   GL+ RL      K    Q+Y +R
Sbjct: 293  LGDPTPPSFKFTAEYAKAENLDFTQDSE-YFAYKCREGLKKRLLNIPQEKH---QEYTER 348

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L+ E+ +I +MKF GY LIV DF++ AK+  IPVGPGRGS AGS+ A+ L IT+IDP+++
Sbjct: 349  LEREIEIINKMKFPGYMLIVWDFVRAAKERGIPVGPGRGSAAGSLVAFCLEITNIDPMKY 408

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNP+R+SMPD D+DFCQ RR+E++ YV  KYG   VAQ+ITFG ++AKA +RD
Sbjct: 409  DLLFERFLNPERVSMPDIDMDFCQSRREEILEYVTEKYGRHNVAQVITFGMMKAKAVIRD 468

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V R + MPY + D   KLIP D    +  +A   + + +E    +P   ++ + +  LE 
Sbjct: 469  VARVMGMPYGEADSFAKLIPKDLDITLE-KAYEKEPKIKELIEKNPLAKKIWDFAVILEN 527

Query: 521  LYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
              R+  THAA +VI  +  L    P+YR  R  +  TQ++MK++E   LIKFDFLGLKTL
Sbjct: 528  TKRNPGTHAAAVVIDSENELWHKAPLYRSSRDGIIATQYSMKYLEDVDLIKFDFLGLKTL 587

Query: 580  TLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            TL+  +L  +  R   ++D   +  DD + Y  L +  TLGIFQ+ESS  +   + ++P 
Sbjct: 588  TLIDDALKLIKNRHHLEIDFLKLDVDDKKVYETLQSGNTLGIFQIESSMFQGINKRLKPS 647

Query: 639  CIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
              EDIIA+++L RPGP+++ +V  + +RK+GK  IV + P ++P+LK T G I+YQEQVM
Sbjct: 648  TFEDIIAIIALGRPGPMESGMVSDFIDRKHGKAPIVYMFPELEPILKPTYGTIVYQEQVM 707

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            QI Q + G+SL EAD++RRAMGKK  + M   K +F  GA   G  K  A  ++EL+ KF
Sbjct: 708  QIVQRIGGFSLGEADLIRRAMGKKDAQIMADNKNKFAQGAQSQGFDKAKAEELWELIVKF 767

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A YGFNKSH+AAYA+++++TA++KT+YP EF+AA +T E +  EKI ++ ++A + +I++
Sbjct: 768  AGYGFNKSHSAAYAMLTFETAYLKTYYPKEFMAALLTSEKNATEKIVEYIEEANKMDIKV 827

Query: 817  MPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871
            +PP++    ++F V    G++ I + L AIKG G      I+E    +  F  LEDF +R
Sbjct: 828  LPPNLQKSELEFSVAKIEGEDCILFGLGAIKGAGEVAINVILEERKNNGEFKDLEDFLAR 887

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            +D +K+N++ LES + +GA+DCF Y+R  LL+ ++ + + A+  +  R     ++F   +
Sbjct: 888  IDPQKVNKKSLESFIKSGAMDCFNYTRKTLLEQVEILTESARVAQTARKEAENSLFGDSE 947

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
               S  + LE     +     E E+  LGFY SGHPL+ YK I++ +      +      
Sbjct: 948  EFTSVALELENKGEFDKKQILEFEKESLGFYASGHPLENYKEIIKSIDCVYTNQIQDIAE 1007

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++I L   +     K ++ G R G +   +     E   F
Sbjct: 1008 NSHILLIGSIEDVITKFSKTGKRYGILKLQDLYGSIELTIF 1048


>gi|169334376|ref|ZP_02861569.1| hypothetical protein ANASTE_00775 [Anaerofustis stercorihominis DSM
            17244]
 gi|169259093|gb|EDS73059.1| hypothetical protein ANASTE_00775 [Anaerofustis stercorihominis DSM
            17244]
          Length = 1215

 Score = 1024 bits (2647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1075 (33%), Positives = 585/1075 (54%), Gaps = 71/1075 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL VH+ YSLL+G   +  +   +      +IAITD  N+F  +EF +     GI+P
Sbjct: 4    PFTHLHVHTEYSLLDGFCKIKELPKLVKDMGMDSIAITDHGNMFGVIEFYRACRKEGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC++ + M D      +           +L      GY+ L+++VS  Y         
Sbjct: 64   VLGCEIYMTMGDR---KGRDPMNDKQSFHFILFAENEIGYKNLMKVVSIAYTEG-FYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R     L++  +EG+I  +    G I R       + A+K L  F  ++  D  ++ +Q 
Sbjct: 120  RADFDLLEKY-SEGIIATSACIGGIIPRKINSGEIEEAKKYLERFINIYGKDNFFLEIQD 178

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +      +++++A  + + L+ATN+S +L + D EAHDVL+ V  ++ +S ++R R
Sbjct: 179  HGLEEEKTANEELIKMAKEYGVGLIATNDSHYLRKSDSEAHDVLLCVQTASNLSDENRMR 238

Query: 248  VTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D +  K   EM  +F   PEA+ENT +IA RC+  ++     LP F   E       
Sbjct: 239  FPNDEFYIKTPEEMSDLFKYCPEAIENTHKIAERCNVEIEFGHYHLPVFPLPEGM----T 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L+   + GL  +            ++  +RL++EL VI  M F+ YFLIV DFI +
Sbjct: 295  SQQYLKKLCMDGLYKKY-------DNVTKELTERLEYELGVINDMGFNDYFLIVWDFINY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            ++ ++IPVGPGRGS AGS+ +Y L IT IDP++++L+FERFLN +R+SMPD DIDFC ++
Sbjct: 348  SRTHDIPVGPGRGSAAGSIVSYTLDITQIDPIKYALIFERFLNNERVSMPDIDIDFCYEK 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E I YV  KYG + V+QI+TFG+L+ KAA++D+ R++ + + Q +++ KLIP++    
Sbjct: 408  RHEAIEYVIEKYGFDNVSQIVTFGTLKPKAAVKDIARSMGISFDQSNKIAKLIPDEAKIT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +AIA +    +    DP++ +LL+ ++ +EG+ RH+STHAAG++I DR +S  VP+Y
Sbjct: 468  IE-KAIAMNPELHQMYDEDPTIKKLLDTAKAVEGMPRHSSTHAAGVIISDRAVSDYVPLY 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
             +  S     QFNM  +E+ GL+K DFLGLK LT+++ +LD +   +G+ VD+  I   D
Sbjct: 527  LNKDS--IAAQFNMTTVEELGLLKMDFLGLKNLTVIKHTLDNIKLSKGIDVDIDNISLTD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
               +  ++   T+G+FQL S GM+  ++ ++P+  EDIIA +SLYRPGP+D I  Y + K
Sbjct: 585  QNVFDTISRGDTIGVFQLASPGMQSFMQRLKPNTFEDIIAGISLYRPGPMDMIPTYIDNK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +    I  +HP ++P+L  T G+IIYQEQVMQI + L+GYS+  +D++RRAMGKK  E +
Sbjct: 645  HNPANISYLHPSLEPILNVTYGIIIYQEQVMQIVRDLAGYSMGRSDLIRRAMGKKKHEVI 704

Query: 726  DKQKERF----------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             K++E F                + G    GI +     I++L+ KFA YGFNKSHAAAY
Sbjct: 705  AKEREIFLHGNEEAFNKGEDKEKVHGCVAIGIDEKTGNEIYDLMEKFASYGFNKSHAAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
             VISYQTA++KT+YP EF+AA +T+ + + +++  +    ++  I+++PP VN     F 
Sbjct: 765  GVISYQTAYLKTYYPAEFMAALITVYIGSDDRM-LYMNHLKEKGIKLLPPDVNKSYSRFT 823

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V +  + + L A+KG+G +    I++A  +   F S  DF ++++   LN++ +ESL+ +
Sbjct: 824  VDNGSVRFGLLALKGLGESAIEEIIQAREEKGDFTSFPDFVNKIEFNSLNKKGVESLILS 883

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVE 946
            GA D  G +R +L    ++         K        +        +++I  T+   +  
Sbjct: 884  GAFDSLGNNRRELYCVYEDFLNDTLRQRKQNIAGQTTLLEMLSQEENEQIEMTIPTMAEF 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN------------ 994
             +  + + E+ V+G Y SGHPL  ++  L K       E        N            
Sbjct: 944  ETKEKLKFEKEVMGMYISGHPLAEHEEDLNKYTSMQLYEVYDRYGNKNSEEEEEAEPQPP 1003

Query: 995  ---------------IRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
                           I +  +V   +   T+K   ++ ++T  +   + E   FP
Sbjct: 1004 VNNKYNKFNKNKRELITIGGLVTYVKVIYTKKDNKQMAFMTVEDLTSDMEIVVFP 1058


>gi|326316817|ref|YP_004234489.1| DNA polymerase III subunit alpha [Acidovorax avenae subsp. avenae
            ATCC 19860]
 gi|323373653|gb|ADX45922.1| DNA polymerase III, alpha subunit [Acidovorax avenae subsp. avenae
            ATCC 19860]
          Length = 1181

 Score = 1024 bits (2647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1056 (39%), Positives = 601/1056 (56%), Gaps = 57/1056 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   ++ +    + D QPA+AITD +NLF A++F ++A   G++P+
Sbjct: 2    FVHLRLHTEFSVVDGTTRIDEVAKAASKDGQPALAITDLHNLFGAIKFYKEARGKGVKPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ I+ +          T       I+LL    +GY  L E+++R +  +  K    
Sbjct: 62   LGAEVSIEPE----------TAGNPPGRILLLAQGRQGYLNLCEMLARAWTRNVVKNVPL 111

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
                WL+E+G   LI L+G  +GP+ +AF       A +  L    LF  R Y+ LQR  
Sbjct: 112  CTWEWLEELGG-DLIALSGAQAGPVGQAFTRGDDAGAARVALRLAGLFPHRFYLELQRAG 170

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D  +    VQLA    LP+VAT  + FL+ +DYEAH+  + +A   +++   R  R 
Sbjct: 171  RPEDESQVVAAVQLAARLNLPVVATQPTQFLTADDYEAHEARVCIAEGEILANPRRVRRF 230

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K+ ++M ++F+D+P A+ NT+EIARRCS  L +  P LP F       I    +
Sbjct: 231  TREQYFKSSAQMEALFADVPTAIANTLEIARRCSLTLVLGKPRLPDFPTPNGMPI----D 286

Query: 309  NELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R  +  GLE RL         +      Y +RL+FELN I +M F GYFLIV DFIQ
Sbjct: 287  EYFRYASFEGLEERLKHLFRNEAERDKQRPRYVERLEFELNTILKMGFPGYFLIVGDFIQ 346

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+N  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 347  WAKENGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQS 406

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV++KYG   V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P  
Sbjct: 407  NRDRVIDYVKDKYGKNAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGM 466

Query: 486  PVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
              +L               A+  +    E    +  V  ++E++QKLEG+ R+   HA G
Sbjct: 467  SYTLAYPPEVKKEGDKNNYALELEPMLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHAGG 526

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F+ +
Sbjct: 527  VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMK 586

Query: 592  RGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R    +      IP DD  TY L +   T  +FQ ES GM+  L+  +P  +ED+IAL +
Sbjct: 587  RHKGQENFAFENIPLDDAPTYRLFSEGKTEAVFQFESRGMQGMLKEARPSRLEDLIALNA 646

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  + NRK+GKE +   HPL++P+L ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 647  LYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLG 706

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM + +E F  GA++ GI +  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 707  GADMLRRAMGKKKAEEMAEHREIFRKGAAEKGIGQDKADEVFDLMEKFAGYGFNKSHAAA 766

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA +  +   PP VN     F
Sbjct: 767  YSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLYEDAMKMGLTFEPPDVNRGMYRF 826

Query: 829  KVGDNR-IYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKKL 877
            +   ++ I Y L A+KG G      I+ A              PF SL DFC+RVD  +L
Sbjct: 827  EPVTDKVIRYGLGAVKGTGQQAIEAIIAAREGRGVGPRGDTKGPFASLFDFCARVDRTRL 886

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGT 933
            N+R LE+L+ AGA D    +R  L+ S+D    +A  +  N       +F        G+
Sbjct: 887  NKRTLEALIKAGAFDAIEMNRASLVASIDRAFDFANSLIANAN--QGGLFDMMGDDSHGS 944

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
             +    L +        R   E+  +GFY SGH  D  +  +R+      EE   +    
Sbjct: 945  STQDPALVEMLPWGVKERLTQEKTAVGFYLSGHLFDEVEKEVRRFIRTPIEELADSREPQ 1004

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
               +A +V   +    ++G R+      + +   EA
Sbjct: 1005 --IMAGIVSDFRVINGQRG-RLALFKLDDKSAMIEA 1037


>gi|51598831|ref|YP_073019.1| DNA polymerase III subunit alpha [Borrelia garinii PBi]
 gi|51573402|gb|AAU07427.1| DNA polymerase III, subunit alpha [Borrelia garinii PBi]
          Length = 1147

 Score = 1023 bits (2646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1036 (39%), Positives = 614/1036 (59%), Gaps = 25/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 1    MSFKAKFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +      K   +          ++LL     GY+ L++L S  YL   
Sbjct: 61   AGIKPIIGIEAYMAKTS--KFFKKHDDLGKMSYHLILLAKNEIGYKNLLKLTSISYLEG- 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 118  FYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILGNRFEDAKNEILWFKKVFGNDFYL 176

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S +
Sbjct: 177  ELQRHGIKDQDIVNERLVEYSRELGVPLTAANDSHYVNREDAIAQDIIVCIGTGAKKSDE 236

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKEC 300
            +R    T + Y+K++ EM  +F+DLPEALENTV IA +C  F +    PILP + I  E 
Sbjct: 237  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIEF 296

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + +       L    + GL+ R               + R  +EL+VI RM F GYFLIV
Sbjct: 297  NTLG----EYLEYLTLEGLKFRY-------KTLTSKIKDRAFYELSVIIRMGFEGYFLIV 345

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 346  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 405

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L KLIP
Sbjct: 406  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKLIP 465

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L++ +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 466  DGPK--VSLKEVLDDNSLKEYFTSKPVYKELMDAALVLEGMNRHASTHAAGIVISKTPLT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 524  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 583

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+ +L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 584  IPDNDVKTFKMLGEGKSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQ 643

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G + I   HP +  +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 644  FIAAKKGVKSIKYPHPDLKEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 703

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EMD+ K  F+ GA + G  K +A  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 704  KEDEMDEMKVDFLRGAIEKGYDKEVASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 763

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 764  ANYPQYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFKEFRVTDSGISYGLN 823

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AIK +G      I+ E   +  + S E+F  RVD K +N++ LES + +G  D    +R 
Sbjct: 824  AIKNLGEIVVDLIIDEREKNGKYSSFENFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 883

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F   KG          + F   + S   E E+ 
Sbjct: 884  TLFENLDRLIEVVSEDKNNKKLGQNSLFDVLKGQNPIHQNFNYQAFKEYSYSELLEFEKE 943

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +         + +AT + + ++ + ++ S +  +T++ + ++ 
Sbjct: 944  LLGFYVSGHPLDPYKKAINSFSSLNVLKDLATKKDSIVQFSGILNSVKVIQTKRNNAKMA 1003

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1004 FGVIEDFKGAIDIVVF 1019


>gi|300866715|ref|ZP_07111399.1| DNA polymerase III subunit alpha (modular protein) [Oscillatoria sp.
            PCC 6506]
 gi|300335315|emb|CBN56559.1| DNA polymerase III subunit alpha (modular protein) [Oscillatoria sp.
            PCC 6506]
          Length = 1257

 Score = 1023 bits (2645), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1090 (35%), Positives = 602/1090 (55%), Gaps = 79/1090 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  L  ++D+      PAIA+TD   ++ A+E  +      I P
Sbjct: 2    SFVGLHIHSDYSLLDGASQLPPLIDRAVELGMPAIALTDHGVMYGAIELIKVCRNKNITP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +   D        K         V+L    +GY+ L++L +  +L    ++  
Sbjct: 62   IIGNEMYVVNGDISVKVKGRKK-----YHQVVLAKNTQGYKNLVKLTTISHLQGMPERGL 116

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L++   EGLI+ +G  +G + R     + + A K    +K LFGD  Y+ 
Sbjct: 117  FARPCINKELLEQYH-EGLIVTSGCRAGEVPRLIDLGNLEEARKVAKWYKDLFGDDYYLE 175

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V++     + +VATN+S F +  D EAHD L+ +    +V  + 
Sbjct: 176  IQDHGFWEDRIVNIELVKIGKELGIKIVATNDSHFTACSDVEAHDALLCIQTGKLVEDEK 235

Query: 245  RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R +   YLK+  EM  +F D      + EA+ NT+E+A +         P +P +   
Sbjct: 236  RMRYSGTEYLKSAEEMAQLFRDHLPDDVIKEAIANTLEVAGKIKKYEIFDEPRIPTYEIP 295

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                     +  +   A  GL  R    A  +      Y++RL++EL +I  M FS YFL
Sbjct: 296  P----DHTADTYVEYVAWQGLLERFK--AKERKEIKPVYKERLEYELKMIQDMGFSTYFL 349

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I +A++NNIPVGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 350  VVWDYIDYARRNNIPVGPGRGSAAGSLVAYAMKITNIDPVHHGLLFERFLNPERKSMPDI 409

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC +RRD++I+YV  KYG ERVAQIITF  L +K+ L+DV R L +PY + D + KL
Sbjct: 410  DTDFCIERRDDMIKYVTEKYGAERVAQIITFNRLTSKSVLKDVARVLGVPYKRADEMAKL 469

Query: 479  IPNDPAHPVSLQAIADD----SRFREARLAD--------------PSVDRLLEISQKLEG 520
            IP     P  L  +  +      FR+A   +               +V + L+++ ++EG
Sbjct: 470  IPVSRGKPEKLAVMISEQTPAPEFRQAYEEETLQAKNNDGTEEKTIAVRQWLDMAIRIEG 529

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              +    HAAG+VI  +PL ++VP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT
Sbjct: 530  TNKTYGVHAAGVVISAQPLDEIVPLQRN-NEGAVITQYYMEDLESLGLLKMDFLGLKNLT 588

Query: 581  LLQKSLDFLAQ-RGVKVDLSLIPFDDH------------------ETYHLLTTKGTLGIF 621
            +LQK+++++ Q R   +D  ++P D                    +TY LL      GIF
Sbjct: 589  MLQKTVEYIKQTRDCDIDPEMLPSDIERKAQEAFVTCKKLPEDVSKTYKLLAKGDLEGIF 648

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLID 679
            QLESSGM   ++ ++P C+EDI ++++LYRPGP+D   I  + +RK+G+E +   HPL++
Sbjct: 649  QLESSGMLDVVKKLKPSCLEDISSILALYRPGPLDAGLIPQFIDRKHGRELVEYDHPLLE 708

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
            P+LKET G + +QEQ+M++AQ L+GYSL +AD+LRRAMGKK  +EM KQ+E FI GA+KN
Sbjct: 709  PILKETYGTLCFQEQIMRVAQDLAGYSLGQADLLRRAMGKKKADEMQKQRETFIDGATKN 768

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G+S+ IA  +FE + +FA+Y FNKSH+ AYA ++YQTA++K +YPVE++AA +T    + 
Sbjct: 769  GVSQRIAEKLFEQMLQFAEYCFNKSHSMAYAYVTYQTAYLKANYPVEYMAALLTANSGDQ 828

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFK--------VGDNRIYYSLAAIKGVGTTTAR 851
            +K++K+  +  +  I+I PP +N   V F            ++I + ++A+K +G +   
Sbjct: 829  DKVQKYIANCIKMGIEIEPPDINRSKVTFTPLPKQVTDAEIDKILFGMSAVKNLGDSAIE 888

Query: 852  HIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
            +I++A  +   F SL DFC RVD K +N R LE+L+  GALD    +R QL+  LD + K
Sbjct: 889  NILKAREEGGNFKSLADFCERVDLKAVNSRALEALIQCGALDRLNSNRNQLMHDLDGVVK 948

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDK-------ITLEKFSVENSSVRFENEQRVLGFYF 963
            +AQ  +K+R +   N+F     +F +           +     +   +   E+ +LGFY 
Sbjct: 949  WAQDRKKDRESGQGNLFDLLGMSFGETANSYDSIPKHKPVPDFDKQKKLSLEKELLGFYV 1008

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S HPL       +        +       + ++L  MV + +   T+K  R+  +   + 
Sbjct: 1009 SDHPLKSVLLATQNEETVTVAQLADKKGKDVVKLIVMVTAIKLVTTKKNDRMAILQVEDL 1068

Query: 1024 AKEYEANFFP 1033
              + EA  FP
Sbjct: 1069 TGQLEAVVFP 1078


>gi|255994597|ref|ZP_05427732.1| DNA polymerase III, subunit alpha [Eubacterium saphenum ATCC 49989]
 gi|255993310|gb|EEU03399.1| DNA polymerase III, subunit alpha [Eubacterium saphenum ATCC 49989]
          Length = 1182

 Score = 1023 bits (2645), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1077 (35%), Positives = 586/1077 (54%), Gaps = 77/1077 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VHS YSLL+GA  + +++ + A     ++A+TD   +F  +EF ++    GI+P
Sbjct: 2    SFTHLHVHSEYSLLDGAARIRDLVAEAARFGMKSLALTDHGTMFGVVEFYKECKKQGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +            +    +   ++LLV   EGY+ LI+LVS     +      
Sbjct: 62   IIGCEVYVARGS-------IEVQEKSPNHLILLVKNEEGYKNLIKLVSIAN-KEGFYYKP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            RI    L E  ++GLI L+   +G I       + + A+K  + ++ ++G+   Y+ +Q 
Sbjct: 114  RID-ENLMERFSKGLIALSACPAGRIPELILEGNYEEAKKTAIKYRDIYGEGNFYLEIQN 172

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    ++    ++ +++    + LVATN+S ++ +ED + HDVL+ +     +S + R +
Sbjct: 173  HGLDKEQIINRELTKMSEETGIKLVATNDSHYVKKEDAKMHDVLLCIKTGARLSDEVRMK 232

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D  YLK+  EM  +F    +A+ENT+E+A +C+F    ++  LP F   E +     
Sbjct: 233  FPSDDFYLKSEDEMRMLFPGQTKAIENTLEVAEKCNFDFDFNSQHLPDFEVPEGE----T 288

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +E  LR     GLE R             + R+RL+FEL+ I  M +  YFLIV DFI +
Sbjct: 289  KEGYLRKLCCEGLEKRHKN-------VTNELRERLEFELDTIHNMGYDEYFLIVHDFIHY 341

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGS AGS+ +Y L IT +DP++++LLFERFLNP+R+SMPD DIDFC+DR
Sbjct: 342  AKTRGIPVGPGRGSAAGSLVSYCLDITCVDPIKYNLLFERFLNPERVSMPDIDIDFCKDR 401

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV +KYG +RVAQI+TFG+L+AKAA+RDVGR +   Y +VDRL K +P  P   
Sbjct: 402  RQEVIDYVIDKYGDDRVAQIVTFGTLKAKAAIRDVGRIMNAGYGEVDRLAKAVP--PGLG 459

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            V+L     DS F+E          +++++ +LEG+ R+A THAAG+VI    +   VP+Y
Sbjct: 460  VTLSDALKDSNFKELYEEGEDSKEVVDMALQLEGMVRNAGTHAAGVVISKESIDSYVPIY 519

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
            +  +     TQ  M  IE+ GL+K DFLGLK LT+++   + +    G+K++     +DD
Sbjct: 520  KSDKGF--CTQMTMTTIEELGLLKMDFLGLKNLTVIENCKNMVYRNHGIKINFDDSNYDD 577

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             + Y L+++  T GIFQLES GM + ++ ++PD IEDIIA +SLYRPGP+D+   Y   K
Sbjct: 578  SKVYELISSGNTEGIFQLESEGMTEFMKDLKPDSIEDIIAGISLYRPGPMDSKDNYIFNK 637

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
               ++I   HP + P+L  T G ++YQEQVMQI + L+GYS   AD++RRAM KK  +EM
Sbjct: 638  RHPDRIKYKHPALKPILSLTYGCLVYQEQVMQIVRELAGYSYGRADLVRRAMSKKKADEM 697

Query: 726  DKQKERF------------------------------ISGASKNGISKTIAVNIFELLAK 755
             K++E F                              + G  K GI K +   IF+ +  
Sbjct: 698  AKEREIFLFGTENEYWAEENEKSCKISDAPVTDDEEVVEGCVKRGIPKEVGNEIFDEMES 757

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSHAAAYAVISYQTA++K HYPVEF+A+ +     N  K+ ++ ++AR  NI+
Sbjct: 758  FASYAFNKSHAAAYAVISYQTAYLKAHYPVEFMASLLASASGNDGKMARYIKNARDMNIE 817

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS--ADKPFDSLEDFCSRVD 873
            I+PP VN   V F+   N I + LA +K VG   A HI++      K +D++  F   +D
Sbjct: 818  ILPPDVNKSGVTFEARGNEILFGLADVKNVGDNAADHIVKVRESKGKAYDNMYTFVQDMD 877

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
              K+N+ VLE+L+ AGA   F  +    L   ++  +  +   K  T    ++F   +  
Sbjct: 878  ISKVNKSVLENLIRAGAFRDFEGTMAANLSIYNDALEQKKKSNKGITADQMSLFEEGEIE 937

Query: 934  FSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM------GIKGYEE- 985
                   +        + + + E+  LG Y + HP+  Y+  L          I    + 
Sbjct: 938  GEQFSQKIPNIPEFKDAQKMKFEKEALGMYLTTHPMKEYEQYLEGRITDVLGNINPEADS 997

Query: 986  ---------SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                     S A   G  ++LA ++ + +   T+KG  + +    +     E   FP
Sbjct: 998  DDEEDVASKSSAYREGQRVKLAGLITTVKTIVTKKGEMMAFANLEDMTGRMEMVIFP 1054


>gi|254480316|ref|ZP_05093564.1| DNA polymerase III, alpha subunit subfamily, putative [marine gamma
            proteobacterium HTCC2148]
 gi|214039878|gb|EEB80537.1| DNA polymerase III, alpha subunit subfamily, putative [marine gamma
            proteobacterium HTCC2148]
          Length = 1135

 Score = 1022 bits (2643), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1025 (38%), Positives = 588/1025 (57%), Gaps = 43/1025 (4%)

Query: 33   LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
            + ++A    PA+A+TD +N +  ++  + A +AG+QPI G  L +   D+ + +      
Sbjct: 1    MSRVAELGMPAVAVTDVSNFYGLVKVHKSAFSAGVQPIFGTDLRVLDADDPEKS------ 54

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + LL     GY  L  L+SR Y   Q      +  +WL+E   EG+I L+ G+ 
Sbjct: 55   ----YPLCLLAMNQTGYHNLTLLISRSYTEGQYLGVPYVQKAWLEECA-EGVIALSAGAR 109

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPL 211
            G + +A     S++A  R   +  L+  R Y+ L R     D       V LA   + P+
Sbjct: 110  GDVGQAIIGEKSELAVARAKYWMALYPQRFYLELHRTGREGDETHLHGAVNLAAQLQCPV 169

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEA 270
            VATN+  FL   ++EAH+  + +     +    R R  T   YL++  EM  +F+D+PEA
Sbjct: 170  VATNDVRFLDASEFEAHEARVCIGEGRTLDDPRRARSYTEQQYLRSPEEMTELFADIPEA 229

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ----G 326
            L NTV+IARRC+ +L++  P LP +   E   +    +   R  +  GL+ RL       
Sbjct: 230  LANTVQIARRCNVVLELGKPYLPDYPVPEGMTM----DEFFRQLSHDGLDARLEALFDSS 285

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
            A       + YR+RL+FEL  I +M F GYFLIV DFI+WAK+++IPVGPGRGSGAGS+ 
Sbjct: 286  ADDFPAKQKQYRERLEFELETIIQMGFPGYFLIVMDFIRWAKQHDIPVGPGRGSGAGSLV 345

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AYA+ ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI YV + YG E V+QI
Sbjct: 346  AYAMEITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDYVADTYGREAVSQI 405

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
            ITFG++ AKA +RDV R     Y   D+L KLIP +    +  +A+  +   +E    D 
Sbjct: 406  ITFGTMAAKAVVRDVARVQGKSYGLADKLSKLIPFEVGMTLE-KALEQEEALKEFLAEDE 464

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
                + +++++LEG+ R    HA G+VI    L+   P++ D      VTQ++   +E A
Sbjct: 465  QAQEIWDMAEQLEGVTRGVGKHAGGVVIAPSKLTDFSPLFCDESGSGLVTQYDKGDVEDA 524

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            GL+KFDFLGL+TLT++  ++  +           +D+  IP DD  ++ LL +  T  +F
Sbjct: 525  GLVKFDFLGLRTLTIIDWAVKMINTVRDTDGQAPLDIMQIPLDDQPSFTLLKSAKTTAVF 584

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI----- 674
            QLESSGM+  +E +QPDC EDI+ALV+L+RPGP+ + +   + NRK+G+E++        
Sbjct: 585  QLESSGMKDLIERLQPDCFEDIVALVALFRPGPLQSGMVDNFINRKHGREELSFPDAKWQ 644

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            H  + P+L+ T G+I+YQEQVMQIAQ L+GY+L  AD+LRRAMGKK  EEM KQ+  F  
Sbjct: 645  HEWLKPILQPTYGIILYQEQVMQIAQELAGYTLGGADMLRRAMGKKKPEEMAKQRTIFEE 704

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP  F+AA M+ 
Sbjct: 705  GAKSKGVDSELAMRIFDLVEKFAGYGFNKSHSAAYALVSYQTCWLKTHYPAPFMAAVMSS 764

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHI 853
            E+DN +KI  F  + ++  + +  P VN     F V     I Y L AIKG+G      I
Sbjct: 765  ELDNTDKIVVFVDECKRMKLSLKLPDVNEGQYMFTVNAQGDIIYGLGAIKGLGEGPVEII 824

Query: 854  MEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            +     D PF  L DFC+R D +K+NR+ +E+L+ +GALD  G +R  L+ S+++  K A
Sbjct: 825  LATRETDGPFTDLFDFCARTDPRKVNRKAIEALIRSGALDSLGETRWVLMASMEDALKAA 884

Query: 913  QWVEKNRTNKHENIFAH-----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +    NR    +++F       E GT        K        R   E+  LG Y +GHP
Sbjct: 885  EQSASNRDAGIDDLFGEVVPSQENGTEDVYAGFRKVRPWTDKERLGGERDTLGLYITGHP 944

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            +D Y+  +RK   K   +     +GN + +  ++++ +   T++G+ +  +T  + + + 
Sbjct: 945  IDEYQVEIRKFAPKRIVDVRPDKQGNQLLV-GLIMATRTMNTQRGT-MAVLTLDDSSAQM 1002

Query: 1028 EANFF 1032
            E   F
Sbjct: 1003 EVTLF 1007


>gi|301167724|emb|CBW27308.1| DNA polymerase III alpha subunit [Bacteriovorax marinus SJ]
          Length = 1215

 Score = 1022 bits (2642), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1063 (35%), Positives = 596/1063 (56%), Gaps = 43/1063 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA+ L +++        PAIA TD  N+F A++F ++  +AGI+P
Sbjct: 23   SFVHLHLHTQYSLLDGAIRLKDLIPAAKEMGVPAIAQTDHGNMFGAIDFYKRCKSAGIKP 82

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF----------PTVPSIVLLVSTAEGYQRLIELVSRM 119
            I+G ++           +  ++              +  ++LL     GYQ L +L+SR 
Sbjct: 83   ILGSEIYFTPGSRFDRKSARRSARVSNQDEEESNHHIHHLILLAKNNIGYQNLCKLLSRA 142

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF- 178
            YL        R  +  L+E  +EGLI  T    G +   FF    + A + +   +++F 
Sbjct: 143  YLEG-FYYKPRADIELLKEY-SEGLICTTACLKGEVGYNFFTGQDEKAVRAIEKLQEVFG 200

Query: 179  GDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +  Y+ +Q +   ++     +V++ A   ++ +VATN++ +++ ED  A +VL+ +   
Sbjct: 201  YEDFYLEIQENGIPEQADVNRKVLEYAKEKKVKVVATNDAHYMTPEDATAQEVLLCIQTG 260

Query: 238  TVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR-- 294
               + ++R    + + Y K+  +M   F   PEA + T+EIA +C+  L        +  
Sbjct: 261  KSFADENRMKMTSQEFYYKSPEKMREQFHYAPEACDATLEIADKCNVELNWTDEQGNQIY 320

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVR--------LAQGAIAKGYHAQDYRQRLDFELN 346
             +     D  + E++  R     GLE R        L      K      Y +RL +E++
Sbjct: 321  HLPDYPIDTGETEDDYFRRMCKEGLEERFRGPHFTKLVSEDNWKAELEPKYWERLKYEVD 380

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            +I  M F GYFLIVADFIQW+K N IPVGPGRGSGAGS+ AYA+TIT+IDPL ++LLFER
Sbjct: 381  MIIEMGFPGYFLIVADFIQWSKNNGIPVGPGRGSGAGSLAAYAMTITNIDPLPYNLLFER 440

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            F+NP+R+SMPDFD+DFCQ  R  VI YV  KYG E+V QIITFG LQAKA ++DV R   
Sbjct: 441  FINPERISMPDFDVDFCQAGRQRVIEYVTEKYGEEKVGQIITFGKLQAKAVVKDVSRVFD 500

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
            + +++ + L KLIP++    +  +AI  + + +E    D  + ++  IS++LEGLYRHA 
Sbjct: 501  LSFAEANMLSKLIPDELGINLE-KAIEMEPKIQELIDTDSKIRQIFTISRRLEGLYRHAG 559

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HAAG++I  +PL +  P+++  + +  V QF+  + E+ GL+KFDFLGLKTLT++  + 
Sbjct: 560  IHAAGVIITSKPLVEYCPLFKGAKGE-KVVQFDKDFSEEIGLVKFDFLGLKTLTVIDYAS 618

Query: 587  DFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             F+ +  V   D+  I ++D + Y  +    T+G+FQLESSGM    + + PD I+DI A
Sbjct: 619  KFVQRDHVKDFDIEEIDYEDKKVYDFIGDGNTIGVFQLESSGMIDLCKRIMPDSIDDITA 678

Query: 646  LVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            + +LYRPGP+ + +   +   K+G++K       + P+LK+T G+I+YQEQVM IA++L+
Sbjct: 679  INALYRPGPMGSGMHDQFVEIKHGRQKEHYAFEELRPLLKDTYGIIVYQEQVMNIARVLA 738

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GY+L +AD+LR+AMGKK    +++ +E F+ GA++ G     A  +++L+A FA+YGFNK
Sbjct: 739  GYTLGQADILRKAMGKKKIALIEEHREIFLKGAAERGFDVEKAGELYQLMASFAEYGFNK 798

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHA AY+ IS+QTA++K +YP  F A  ++ E+ N +K+  +  DA+   ++++PP VN 
Sbjct: 799  SHAVAYSYISFQTAFLKYYYPACFFAGLLSTELSNTDKVTVYINDAKNHGVEVLPPDVNE 858

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTT-ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                F V    I + + AIK VG       + E   + PF    DFC+RV  K +N RV+
Sbjct: 859  SLWLFNVIGQNIRFGMGAIKNVGENAVEELVREREENGPFKGFIDFCTRVSLKIVNNRVI 918

Query: 883  ESLVFAGALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
            ESL+  GA D      +R  +L++ + I  YA+ ++  +     ++F     +  D  + 
Sbjct: 919  ESLIKVGAFDECETKLNRKTMLENAELIVTYAKKLQHEKELGQVSLFDMGGSSSDDDGSN 978

Query: 941  EKFS--------VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
            +             +   +   E +++G Y SGHPLD Y  I+ K+       +     G
Sbjct: 979  DPMKMLDIQITNDFDDREKLAYEAQLMGIYVSGHPLDRYSDIMGKLASMDIAAARDLTGG 1038

Query: 993  --NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                + LA ++  K+   T+KG R+ +    + + + E   FP
Sbjct: 1039 DKREMMLAGLISEKRDIMTKKGDRMCFAQLEDLSGKIECIVFP 1081


>gi|159037409|ref|YP_001536662.1| DNA polymerase III subunit alpha [Salinispora arenicola CNS-205]
 gi|157916244|gb|ABV97671.1| DNA polymerase III, alpha subunit [Salinispora arenicola CNS-205]
          Length = 1177

 Score = 1022 bits (2642), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1065 (33%), Positives = 555/1065 (52%), Gaps = 52/1065 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YS+L+GA  L ++  ++     PA+A+TD  N+  A +F ++A AAG+ P
Sbjct: 4    SFAHLHVHTEYSMLDGAARLKDLFAEVNRQGMPAVAMTDHGNMHGANDFYKQAMAAGVTP 63

Query: 70   IIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            I+G +  +  +             +  +   +       + +      G   L +L SR 
Sbjct: 64   ILGIEAYVAPESRFHKQRVRWGRPEQKSDDVSGSGGYTHMTIWARNKVGLHNLFKLTSRS 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF- 178
            +      +  R+    L E   +GL+  TG  SG +           A K    ++ +F 
Sbjct: 124  FTEGFFVKWPRMDAELLAE-HADGLMATTGCPSGEVQTRLRLEQYDEALKAAARYQDIFG 182

Query: 179  GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +  ++ +  H    +R    ++ ++++  ++P V TN++ +  +E  EAHDVL+ V  +
Sbjct: 183  KENFFLEVMDHGIDIERRVRQELAEISHKLDIPPVVTNDTHYTHQEQSEAHDVLLCVQTA 242

Query: 238  TVVSQKDRPRVTP-DHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVH-APILP 293
              VS  +R R     +Y+K+  EM +I S     +   NT+ +A +           ++P
Sbjct: 243  ANVSDPNRFRFDGSGYYIKSADEMRAIDSSDLWLQGCRNTLLVAEKVDPTGMFDFRNLMP 302

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            RF   E +     +E+  R +   GL  R   G        + + ++ ++EL VI +M F
Sbjct: 303  RFPVPEGE----TDESWFRKETFKGLARRFPDGV------PETHVKQAEYELGVIIQMGF 352

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL+VADFIQWAK   I VGPGRGS AGS+ AYAL ITD+DPL   L+FERFLNP+R+
Sbjct: 353  PSYFLVVADFIQWAKGEGIAVGPGRGSAAGSLVAYALGITDLDPLPHGLIFERFLNPERV 412

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD DIDF + RR EVI+YV  K+G ++VAQI TFG+++AKAA++D  R L  PY+  D
Sbjct: 413  SMPDVDIDFDERRRGEVIKYVTEKWGEDKVAQIATFGTIKAKAAIKDSARVLGYPYAVGD 472

Query: 474  RLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRH 524
            R+ K +P       + L  I D            R    +DP V ++++ ++ +EGL R 
Sbjct: 473  RITKAMPPAVMGKDIPLTGIFDPKHSRYAEAGEIRGLYESDPDVKKVIDTARGIEGLIRQ 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HAAG+++   P+   +P+ R       +TQF+    E  GL+K DFLGL+ LT++  
Sbjct: 533  TGVHAAGVIMSAEPIIDHIPLMRRDADGAIITQFDYPTCESLGLLKMDFLGLRNLTIIDD 592

Query: 585  SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +L  +    G  VDL  +P DD  TY LL+   TLG+FQL+   MR  L  M+PD  EDI
Sbjct: 593  ALKNIESNHGRTVDLLKLPLDDTPTYELLSRGDTLGVFQLDGGPMRSLLRTMKPDNFEDI 652

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQEQVMQ 697
             A+++LYRPGP+  ++   Y  RKNG ++I  IHP +    + +L  T G+I+YQEQV +
Sbjct: 653  SAVLALYRPGPMGANSHTNYALRKNGLQEITPIHPELAEPLEEILGPTYGLIVYQEQVQR 712

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
             AQ+L+GYSL +AD+LRRAMGKK KE +DK+   F  G   NG S      ++++L  FA
Sbjct: 713  AAQVLAGYSLGKADLLRRAMGKKKKEVLDKEFVPFRDGMRGNGYSDEAIQTLWDILVPFA 772

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            DY FNK+H A Y ++SY T ++K +YP E++AA +T   D+ +K+  +  + R+  IQ++
Sbjct: 773  DYAFNKAHTAGYGLVSYWTGYLKANYPAEYMAALLTSVGDDKDKMALYLSECRRMGIQVL 832

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKK 876
            PP VNT    F      I + LAAI+ VG      IM    +K  +    DF S+VD+  
Sbjct: 833  PPDVNTSAGPFTPVGRDIRFGLAAIRNVGANVVSAIMRCRGEKSAYTDFYDFLSKVDAVV 892

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-----EK 931
             N++ +ESL+ AGA D   + R  LL    +       V++       ++F       E 
Sbjct: 893  CNKKTIESLIKAGAFDSLDHPRRGLLAVHADAIDAYADVKRKEAVGQYDLFGAGFADPEV 952

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-- 989
            GT +  +        +   +   E+ +LG Y S HPL   + +L K              
Sbjct: 953  GTSTTVMPAIVDGEWDKREKLAFEREMLGLYVSDHPLFGLEHVLGKEADTTIAALSEEGT 1012

Query: 990  -IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               G  + LA ++   Q++ T++G      T  + A   E  FFP
Sbjct: 1013 IPDGTVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1057


>gi|209517596|ref|ZP_03266435.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160]
 gi|209502009|gb|EEA02026.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160]
          Length = 1189

 Score = 1022 bits (2642), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1042 (38%), Positives = 597/1042 (57%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F Q+A   G
Sbjct: 5    SDPRFVHLRVHSEFSIADGIVRLDDIVAAAAKDGQGALALTDLGNAFGLVRFYQEARGKG 64

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI GC + I   D+                ++LLV    GY  L EL+S+  L +Q +
Sbjct: 65   VKPIAGCDVWITNPDD----------RDKPSRLLLLVKDRRGYLNLCELLSKASLTNQYR 114

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +   WL+    EGL+ L+G   G I  A    + + A +    + K+F    Y+ L
Sbjct: 115  GRAEVEAGWLESGLGEGLLALSGAQQGDIGLALAAGNEEAARRNARHWAKVFPGGFYIEL 174

Query: 187  Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q            Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++   R
Sbjct: 175  QRCGLPGGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRR 234

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + Y +++ EM  +F+D+P AL NTV+IA+RC+  L++  P LP F   +   + 
Sbjct: 235  QKRFTAEQYFRSQQEMAELFADIPSALANTVQIAKRCNLKLELGKPKLPLFPTPDGMSL- 293

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GLE RLAQ       +      Y QRL+FE   I +M F GYFLIVA
Sbjct: 294  ---DDYLVQLSKEGLEKRLAQLYPDEAERDAQRATYYQRLEFECGTIIKMGFPGYFLIVA 350

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 351  DFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDID 410

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG   V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 411  FCQHGRDRVIQYVKEKYGANAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPF 470

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LLE++Q++EGL R+   HA G++I    L+
Sbjct: 471  KPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLT 530

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 531  DFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWS 590

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPGP+D 
Sbjct: 591  LGQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDL 650

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 651  IPSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 710

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+ NG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 711  GKKKPEEMAKHREIFAEGAAVNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 770

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP VN     F+        
Sbjct: 771  WLKAHHPAEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDVNLSAYRFEPVAETDGK 830

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +  F  + DFC+RVD + +NRR +E+L+ AGA
Sbjct: 831  RSRTIRYGLGAIKGSGQNAIEEILRAREEGRFIDIFDFCNRVDRRIVNRRTIEALIRAGA 890

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QL+ S+    + A+    N       +F       S    L          
Sbjct: 891  FDTLHPNRAQLIASVSLAMEAAEQAAANALQ--AGLF-DMGDAPSQGHELIDEPEWPEKR 947

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            + + E+  LGFY SGH  D YK  +R+   +   E      G +  +A ++VS + + T+
Sbjct: 948  KLQEEKAALGFYLSGHLFDAYKDEVRRFVRQKIGEL---KEGRDKLVAGVIVSLRTQMTQ 1004

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1005 RGK-MLIALLDDGTGQCEVTVF 1025


>gi|89900825|ref|YP_523296.1| DNA polymerase III subunit alpha [Rhodoferax ferrireducens T118]
 gi|89345562|gb|ABD69765.1| DNA polymerase III, alpha subunit [Rhodoferax ferrireducens T118]
          Length = 1185

 Score = 1022 bits (2642), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1053 (39%), Positives = 604/1053 (57%), Gaps = 47/1053 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL++H+ +S+++G   + + +   AAD QPA+AITD +NLF A++F + A   G++P+
Sbjct: 2    FIHLRLHTEFSVVDGTNRIGDSVKAAAADGQPALAITDLSNLFGAIKFYKAARKCGVKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ ++                 +  ++LLV   +GY  L EL++R +     K    
Sbjct: 62   IGAEIWLE---------GLGQDASALSRLLLLVQNKQGYLNLSELLARAWTQQGNKAQAS 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            + L WL+E+G EGLI+L+G  +GP+ +A        A    L    +F  R Y+ LQR  
Sbjct: 113  VKLDWLKELG-EGLIVLSGAQAGPVGQALLQGDVARALDAALQLAGVFTHRFYLELQRAG 171

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D       VQLA    LP+VAT+   F   +D+EAH+  + +A   ++S   R  R 
Sbjct: 172  RPDDEAHVVATVQLAARAGLPVVATHPIQFAGPDDFEAHEARVCIADGEILSNPRRVRRF 231

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K+ ++M ++F+D+P AL NT+EIARRC+  L +  P LP F   E +  +   +
Sbjct: 232  TREQYFKSSAQMQALFADVPSALANTLEIARRCNLTLVLDKPQLPDFPTPEVNGQRMTPD 291

Query: 309  NELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +  R  +  GL+ R   L   A  +G     Y  RL+FELN I +M F GYFLIV DFI 
Sbjct: 292  DYFRYASHEGLKERMAHLYPDAAQRGQEMPRYLARLEFELNTIVKMGFPGYFLIVGDFIN 351

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 352  WAKNNGCPVGPGRGSGAGSLVAYSLKITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQT 411

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             R+ VI YV++KYG + V+QI+TFG++ A+AA+RDVGR L M Y+  D + KLIPN P  
Sbjct: 412  NRNLVIDYVKSKYGKDAVSQIVTFGTMAARAAVRDVGRVLDMSYTFCDGISKLIPNKPGV 471

Query: 486  PVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             VSLQ              A+  +    E    +  V  LLE+++KLEGL R+   HA G
Sbjct: 472  SVSLQLPPPDRKKDDKTVYAVEAEPLLAEREAKEEDVKTLLELARKLEGLTRNVGMHAGG 531

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I    L+   P+Y+   SD  V+QF+   +E  GL+KFDFLGL TLT+L+ + DF+ +
Sbjct: 532  VLIAPGKLTDFCPLYQQPGSDSAVSQFDKYDVEAIGLVKFDFLGLATLTILEIARDFIIE 591

Query: 592  RGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R    +      +P DD   Y L     T  +FQ ES GM+  L+  +P  +ED+IAL +
Sbjct: 592  RHRGQENFAFENLPLDDMRVYKLFQEGKTEAVFQFESRGMQGMLKDAKPTRLEDLIALNA 651

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK+G+E +   HPL+  ML ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 652  LYRPGPMDLIPSFVARKHGREVVEYPHPLVAEMLSETYGIMVYQEQVMQTAQILGGYSLG 711

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  +EM +Q++ F  GA+KN I++  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 712  GADMLRRAMGKKDADEMARQRQIFRDGAAKNNINQAKADEVFDLMEKFAGYGFNKSHAAA 771

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y++++Y TAW+K HY  EF  A+MT+EMD+ +K+K   +DA +  +   PP VN     F
Sbjct: 772  YSLLAYHTAWLKVHYTAEFFCANMTVEMDDTDKLKVLYEDALKMGLTFEPPDVNRGGSRF 831

Query: 829  K-VGDNRIYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKKL 877
            + + D  I Y L+AIKG G      I+ A              PF SL DFC RVD  ++
Sbjct: 832  EPISDKVIRYGLSAIKGSGQQAIEAIVAAREGRGVGPSGDVAGPFKSLFDFCVRVDRSRV 891

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY-AQWVEKNRTNKHENIFAHEKGTFSD 936
            N+R +E+L+ AGA D    +R  LL S D   ++ A  +         ++    +G+ + 
Sbjct: 892  NKRTVEALIKAGAFDAIQLNRASLLASTDLAFEFGAAALANANQGGLFDMDDDAQGSSTQ 951

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            +  L +        R   E+  +GFY SGH  D     +R+   +  ++ +         
Sbjct: 952  EPELVQAVPWGVKERLTFEKTAVGFYLSGHLFDEVALEVRRFAKRQIDDLIDIREPQ--L 1009

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            LA ++   +    ++G         + +   EA
Sbjct: 1010 LAGIITDFRVINGQRGKL-ALFKLDDKSGVIEA 1041


>gi|71906199|ref|YP_283786.1| DNA polymerase III, alpha subunit [Dechloromonas aromatica RCB]
 gi|71845820|gb|AAZ45316.1| DNA polymerase III, alpha subunit [Dechloromonas aromatica RCB]
          Length = 1156

 Score = 1022 bits (2642), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1049 (38%), Positives = 602/1049 (57%), Gaps = 42/1049 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SP +VHL++HS YS+ +G + + + + + A D  PA+A+TD  NLF  ++F   A   G
Sbjct: 2    NSPRYVHLRLHSEYSVTDGIVRVGDAVKRAAGDSMPAMAMTDLGNLFGLVKFYTGARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI G  + I   D  +              ++LLV    GYQ+L EL+++ YL++  +
Sbjct: 62   VKPIAGADVWITNPDAPE----------DAYRLLLLVRNRVGYQQLCELLTKAYLVEGRR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   W  E+G++GLI L+G   G I  A    +  +A +R   ++ +F    Y+ +
Sbjct: 112  DRAEIRREWFAELGSDGLIALSGAHLGDIGEALLNGNFDLAGERAKAWEAIFPGAFYLEV 171

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+    +     Q   LA    LPLVAT+   F++ +D+ AH+  + +A   V+    R
Sbjct: 172  QRYGQPQQEAIVQQTADLAGELGLPLVATHPIQFMNRDDFRAHEARVCIAEGYVLGDTRR 231

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  T + Y K ++EMV +F+DLPEALENT+EIA+RC+  + +    LP F         
Sbjct: 232  PKLYTEEQYFKTQAEMVELFADLPEALENTLEIAKRCNLTMTLGKNFLPDFPIPPGM--- 288

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              +   L  +A  GLEVRLA+       +     +Y +RL FE   I +M F GYFLIVA
Sbjct: 289  -TDGEYLVQEAKKGLEVRLAELYPDPEVRQQRRPEYDERLVFECKTILQMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI W KKN +PVGPGRGSGAGS+ AY+L ITDIDPL ++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWGKKNGVPVGPGRGSGAGSLVAYSLRITDIDPLEYALLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQD R  VI YV+  YG + V+QI TFG++ +KA +RDVGR   +PYS  DR+ KLIP 
Sbjct: 408  FCQDNRWRVIEYVREHYGADAVSQIATFGTMSSKAVIRDVGRVFGLPYSMCDRISKLIPI 467

Query: 482  DPAHPVSL-QAIADDSRFREARLAD---PSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                PVSL +A+  + + ++    D    ++  L +++ +LE L R+   HA G++I   
Sbjct: 468  VQNKPVSLAEALEQEPQLKQMMEGDGDGETIRELFDLAGRLEDLTRNVGMHAGGVLIAPG 527

Query: 538  PLSQLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595
             ++   P+Y+   +D  PV+QF+   +EKAGL+KFDFLGL+ LT+++ +++++ +  G K
Sbjct: 528  KITDFCPIYQATGADASPVSQFDKDDVEKAGLVKFDFLGLRNLTIIELAVEYIRRMTGEK 587

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +DL  + F D   Y +L    T  IFQ+ES GM++ L+ + PD  EDIIA+++LYRPGP+
Sbjct: 588  LDLMSLGFKDPAAYQILKDANTTAIFQVESEGMKKLLKKLAPDRFEDIIAVLALYRPGPL 647

Query: 656  DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             + +V  +  RK G++KI   HP +   L  T GVI+YQEQVMQI+Q++ GY+L  AD+L
Sbjct: 648  GSGMVDDFILRKKGQQKIDYFHPDLTACLSPTYGVIVYQEQVMQISQIIGGYTLGGADML 707

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM K +E    GA + G    +A  +F+L+ KFA+YGFNKSH AAYAV++
Sbjct: 708  RRAMGKKKPEEMAKHRETIAQGAKEKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAVVT 767

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGD 832
            Y TAW+K H+   F+AA+M+ ++DN + +K F +D     I+++ P VN     F+ V  
Sbjct: 768  YHTAWLKAHHCAAFMAATMSSDLDNTDSVKIFYEDTIANKIKVLGPDVNVSNYRFEPVDR 827

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I Y L A+KG G      I++A A+  PF  L DFC R D + +NRR  E+L+ AGA 
Sbjct: 828  GTIRYGLGAVKGTGEQAVNVILKARAEGGPFKDLFDFCMRCDKRMVNRRTTEALIKAGAF 887

Query: 892  DCF--------GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            D          G  R +LL ++     +A+  E+N      ++F                
Sbjct: 888  DTIAPEIAPGKGADRCKLLATVGVAMDFAEQAERNAM--QTSLFDMADVADEHAPEYVNV 945

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
               +   +   E+  LGF+FSGHP +  K  L +   +               +A +VV 
Sbjct: 946  RPWDEKTKLMEEKTALGFFFSGHPYNTCKKELSRFIRRPLNRLEPAKE--MTTIAGLVVG 1003

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + + TR+G  + +V   +     E + F
Sbjct: 1004 VRTQMTRRGK-MLFVQLDDGTGMVEVSVF 1031


>gi|88862980|gb|ABD53857.1| DNA polymerase III, alpha subunit [Jannaschia sp. CCS1]
          Length = 1155

 Score = 1021 bits (2641), Expect = 0.0,   Method: Composition-based stats.
 Identities = 502/1046 (47%), Positives = 669/1046 (63%), Gaps = 59/1046 (5%)

Query: 28   SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTN 87
             +  +   +A    PA+A+TDTNN+F ALEFS+ A  AG+QPIIGCQ+D++ +    +  
Sbjct: 2    KVKKMPGIVADAGMPAVAVTDTNNMFCALEFSEMAKKAGVQPIIGCQIDLEYE----VIA 57

Query: 88   QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML 147
             G+ P      IVLL     GY+ L++L S +YL   G  S  + LS L E   EGLI L
Sbjct: 58   PGEKPRAPAA-IVLLAQNRAGYENLMKLNSALYLRGDGT-SPHVTLSELAE-HAEGLICL 114

Query: 148  TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY------DRYRESQVV 201
            +GG  GP+ R         AE  L T   ++ DRLYV LQRH G       ++  E   V
Sbjct: 115  SGGPDGPVGRHLRAAQMPKAESLLKTLAAIYPDRLYVELQRHPGEGGLPEAEKLTERGHV 174

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEM 260
            +LAY   LPLVATN+  F   E YEAHD ++ VA    V Q + R R+TP HY K+  EM
Sbjct: 175  ELAYALGLPLVATNDVYFPKSEIYEAHDAMLCVAQGAYVDQSEPRRRLTPQHYFKSADEM 234

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
             ++F+DLPEALENT+EIA+RC+F  ++H PILP+F + E          ELR  A  GL+
Sbjct: 235  AALFADLPEALENTIEIAQRCAFRAEMHDPILPKFADDEV--------AELRRMANEGLK 286

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
             RL    I      +DY+ RLDFEL +I  M F GYFLIVADFIQW+K   IPVGPGRGS
Sbjct: 287  ERLR--VIPHAASVEDYQARLDFELEIIEGMGFPGYFLIVADFIQWSKDQEIPVGPGRGS 344

Query: 381  GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
            GAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVIRYVQ KYG 
Sbjct: 345  GAGSLVAYALTITDLDPLRYSLLFERFLNPERISMPDFDIDFCMDRREEVIRYVQEKYGR 404

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFR 499
            +RV QIITFG+L +KAA+RDVGR LQMP+ QVDRL K+IP +   PVS+ QAI D+ RF 
Sbjct: 405  DRVGQIITFGALLSKAAVRDVGRVLQMPFGQVDRLSKMIPVEGVKPVSIAQAIKDEPRFI 464

Query: 500  EARLADPS---------VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            E                  RL++ ++K+EGL R+ASTHAAG+VIGDRPL +LVP+YRD R
Sbjct: 465  EEMRESEQDKRDGRVNPTRRLMDYAEKIEGLLRNASTHAAGVVIGDRPLDELVPLYRDPR 524

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVKVD--------- 597
            SD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D +     Q     D         
Sbjct: 525  SDMPATQFNMKWVEPAGLVKFDFLGLKTLTVVQNAIDLIHTSGRQLHEGPDGTTLYEPPE 584

Query: 598  -----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                 ++LIP DD  +Y L  +  T+ +FQ+ESSGM  AL  M+PDCIEDIIALV+LYRP
Sbjct: 585  GTENQINLIPLDDKASYDLYASAKTVAVFQVESSGMMDALRRMKPDCIEDIIALVALYRP 644

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP++NI  +   KNG  +   +HP +D +L ETQG+I+YQEQVMQIAQ ++GYSL  AD+
Sbjct: 645  GPMENIPKFCEVKNGLSERERLHPTVDHLLDETQGIIVYQEQVMQIAQEMAGYSLGGADM 704

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKKI+E MD ++ +F++GA +NG+ +  A+  + LL KFA+YGFNKSHAAAYAV+
Sbjct: 705  LRRAMGKKIQEAMDAERPKFLAGAKENGVDEAKALETWALLDKFANYGFNKSHAAAYAVV 764

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQTAW+K ++PVEF+AA M  ++   +K+  + Q+  +  I+ + P VN     F V D
Sbjct: 765  SYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKQEVDRMGIETLAPCVNRSAATFTVED 824

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASA----DKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             ++ Y+L A+K VG    + I+E        KP+ +L D   RVD K++ +R LE LV A
Sbjct: 825  GKVLYALGALKNVGVEAMKMIVEGRQTDQGVKPYATLFDLARRVDLKRVGKRSLEMLVRA 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R  +L SLD +  Y+  V    ++   ++F  + G    +  L        
Sbjct: 885  GAFDELDRNRRHVLDSLDGLTAYSAAVHDQASSNQVSLFG-DAGDDLPEPRLSSAPDWLP 943

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQ 1006
            + R   E + +GFYFSGHPLD Y+P L++ G+    E  A ++      ++A  V  KQ+
Sbjct: 944  NERLAAEHQAVGFYFSGHPLDDYQPALKRRGVMTLAEVEARVQQGPFVAKMAGAVSVKQE 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +K+++G+R  +V+ S+P   YE   F
Sbjct: 1004 RKSQRGNRFAFVSLSDPTGLYEITIF 1029


>gi|255322503|ref|ZP_05363648.1| DNA polymerase III subunit alpha [Campylobacter showae RM3277]
 gi|255300411|gb|EET79683.1| DNA polymerase III subunit alpha [Campylobacter showae RM3277]
          Length = 1326

 Score = 1021 bits (2641), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1062 (36%), Positives = 605/1062 (56%), Gaps = 45/1062 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F HL +H+ YSLL+GA  +  +   +      A AITD  N+F A++F +    
Sbjct: 1    MSDFTDFTHLHLHTEYSLLDGANRIKELAKTLKKQGVKAAAITDHGNMFGAIDFYKTMKN 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+P+IG +  I   + L     G         + L+     GY+ L+ L S  Y+   
Sbjct: 61   EGIKPLIGIEAYIHNGEEL-----GDKSTKQRFHLCLIAKNEIGYKNLMYLSSMSYIEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR---------AFFFNSSQVAEKRLLTFK 175
                 RI    L+E  +EG+I  +    G ++           F     + A++  L +K
Sbjct: 115  FYYYPRINKKILKE-HSEGIICSSACLQGEVNWNLNQSERNLRFGAGGYEAAKEAALWYK 173

Query: 176  KLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            ++FGD  Y+ + RH   D+ R + ++++LA    + ++ATN++ +  ++  +AH+V M +
Sbjct: 174  EVFGDDFYLEIMRHGIGDQRRIDDEILRLAKELNIKVIATNDTHYTFKQRADAHEVFMCI 233

Query: 235  AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            A + ++   +R R +  + Y+K  ++M  +F+D+PEA+ NT EI  +C   +++     P
Sbjct: 234  AMNKLLDDPNRLRHSVHEFYVKTPAQMSELFADIPEAVTNTQEIVDKCDLSIKLGDATPP 293

Query: 294  RF--------------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
             F               E +       +     ++   GLE RL      +    ++YR 
Sbjct: 294  NFKFTLEYAAERNLSLPEPDKRYSIPNDSVLFEHECRQGLEERLKFVTAERH---EEYRT 350

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL  E+++I +M F GY +IV DFI  AKK  +PVGPGRGS AGS+ AY+L ITD+DPL 
Sbjct: 351  RLQREIDIINKMNFPGYMMIVWDFINEAKKRGVPVGPGRGSAAGSLVAYSLKITDLDPLP 410

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            ++LLFERFLNP+R+SMPD D+DFCQ+RR E+I YV  KYG   VAQ+ITFG L AK  +R
Sbjct: 411  YNLLFERFLNPERVSMPDIDVDFCQNRRGEIIDYVIEKYGKFNVAQVITFGKLLAKGVIR 470

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            DV R   MPY++ D + KLIP++    +  QA   + +  E   ++ + +R+ + +  LE
Sbjct: 471  DVARVCDMPYAEADAMAKLIPDELGITLE-QAFEKEPKIGELIASNSNANRIWKFALDLE 529

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYR--DVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            GL R+A  HAAG+VI +  L    P++R  +   D  VTQ+++K++E   LIKFDFLGLK
Sbjct: 530  GLNRNAGMHAAGVVISNEELWNKTPLFRQPNAEEDHFVTQYSLKYLEDVDLIKFDFLGLK 589

Query: 578  TLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            TLT++  ++  + +R   ++    +  +D +TY  +++  TLG+FQ+ES GM++    M+
Sbjct: 590  TLTVIDNAVKLVKKRFGKEIIWEQVNKNDPKTYETISSGQTLGLFQIESEGMQKVGADMR 649

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            PDC EDIIA++SLYRPGP+D I  +  RK+G E I  I P + P+L+ T GVI+YQEQVM
Sbjct: 650  PDCFEDIIAMISLYRPGPMDLIPDFIKRKHGLEPITYIFPELQPILEPTYGVIVYQEQVM 709

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            QI Q + G+SL  AD++RRAMGKKIKEEMD+ K +FI GA   G+    A  +FEL+  F
Sbjct: 710  QIVQTIGGFSLGGADLVRRAMGKKIKEEMDRLKGKFIEGAEAQGLDGKKADELFELILHF 769

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A YGFNKSHAAAY  +++QTA++KT+YP EF+AA +T E  N +KI ++  + ++ +I I
Sbjct: 770  ASYGFNKSHAAAYTYVTFQTAYLKTYYPAEFMAALITSEETNADKISRYIDECKRLDIAI 829

Query: 817  MPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            +PPSVN    +F V    G + I Y L AIKGVG     +I+E  A   F  ++DF SRV
Sbjct: 830  LPPSVNKSAKEFSVVSEGGKDAIIYGLGAIKGVGGAAIENILEEQAKGEFKDIDDFVSRV 889

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D+ K+N++V ESL+ +G+ D FG +R  +L +LDNI +  +     + N  E++F  ++ 
Sbjct: 890  DNFKVNKKVFESLIKSGSFDSFGLTRKMMLNNLDNIVEACKNAATIKKNAAESLFGDDES 949

Query: 933  TFSDKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
              + K +L    S      + + E   +G Y SGHPLD Y+  + K+     ++      
Sbjct: 950  MATVKTSLVRDDSELELKTKLKFELESVGIYLSGHPLDEYREQISKIKYTLSDKFDELPE 1009

Query: 992  GNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
               + L   +     + ++K G ++G +   +     E   F
Sbjct: 1010 NGEMLLVGKIEDLTTRISKKNGKKMGTIEMLDFHGTVEIAVF 1051



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 44/117 (37%), Gaps = 12/117 (10%)

Query: 927  FAHEKGTFSDKITLE-----KFSVENSSVRFENEQ-----RVLGFYFSGHPLDVYKPILR 976
                +   +D+  L      ++S +   +R   ++       +G  FS HPL+ YK  + 
Sbjct: 1055 LGAVESMSADERDLPHAFKVRYSKDGQFMRINLDKILTLDEAMGMDFS-HPLEKYKEQIE 1113

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
            ++     ++     + + I +   +    +  ++K G     ++  +    ++   F
Sbjct: 1114 QIKHTPSKDFGKIDKTSEILVVGKIAEIAKIPSKKTGKEFMMLSVMDLFGTFKVAAF 1170


>gi|297588670|ref|ZP_06947313.1| DNA-directed DNA polymerase III alpha subunit [Finegoldia magna ATCC
            53516]
 gi|297574043|gb|EFH92764.1| DNA-directed DNA polymerase III alpha subunit [Finegoldia magna ATCC
            53516]
          Length = 1161

 Score = 1021 bits (2641), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1050 (35%), Positives = 586/1050 (55%), Gaps = 44/1050 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G   +  +LDK+   Q  +IAITD  ++F  ++F ++     I+P
Sbjct: 4    TFTHLHVHTEYSLLDGFSPIEKLLDKVEELQMKSIAITDHGSMFGTVKFYKECKKRNIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++    +D+     + K        +VLL     GY  L+++VS  Y+        
Sbjct: 64   IIGCEIYTTNKDHKIKNPENK----FYNHLVLLAKNQTGYSNLMKIVSLGYVEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L++  +EG+I L+    G +  +        A+      K ++G+  Y+ LQ H
Sbjct: 119  RVDKDTLRKY-SEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNH 177

Query: 190  RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +     + + ++A   ++ LV TN+  ++ +EDY+ H++L+ +     + ++++   
Sbjct: 178  SSREDMVVMENIPKIANELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEENKMSY 237

Query: 249  TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             P + +L++  +M  +F D PEA+ENT +IA  C+  L+     LP F   +        
Sbjct: 238  IPGEFFLRSEEQMRDLFKDYPEAIENTKKIAEMCNVELEFGNLHLPYFAIPDGF----TN 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + L+     GLE R A          ++ ++R ++EL+VI +M +  YFLIV DFI++A
Sbjct: 294  SSYLKKLVFDGLEKRFAND-----DRLEEAKERCEYELSVIEKMGYVDYFLIVWDFIRFA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K  +IPVGPGRGS AGS+ +Y L ITDI+PL ++L+FERFLNP+R+SMPD DIDFC +RR
Sbjct: 349  KSQDIPVGPGRGSAAGSIISYCLEITDINPLDYNLIFERFLNPERVSMPDIDIDFCYERR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI YV NKYG ++VAQI+TFG++ A+ A+RDVGR L M +  VD   K +PN     +
Sbjct: 409  EEVIDYVVNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLLNINI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +++     FR+A   +  V +L+++++++EG+ RH STHAAG+VI   P+ + VP+  
Sbjct: 469  D-KSLEISPEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYVPL-- 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
             +  D  +TQFNM  +E+ GL+K DFLGL+TLT++   + ++ + + + V    +  +D 
Sbjct: 526  AINKDAVITQFNMTELEELGLLKMDFLGLRTLTVISDCMKYIKKNKDIDVSFEDMDENDP 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +   + T   TLGIFQ ES GMR  L+ ++P   +D+IA  +L+RPGP++ I  Y + K+
Sbjct: 586  KVLSMFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPMNEIPTYIHNKH 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +E +  + PL++ +LK T G I+YQEQVMQI Q ++G+SL EAD LRRAM KK  + M+
Sbjct: 646  NEEDVEYLSPLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKKMKVME 705

Query: 727  KQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              ++ F            I GA + G+ + +A  I++L+  FA Y FNKSH+AAY++++ 
Sbjct: 706  DGRKEFIFGKEDEDGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAYSLVAM 765

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +TAW+K +YPVEFLAA ++  M N  ++  + ++AR+ +I+I  P +N     F V DN 
Sbjct: 766  RTAWLKYYYPVEFLAALISSVMGNTSQLSLYIEEARRLDIKIEAPDINYSLDKFDVKDNS 825

Query: 835  IYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890
            I Y L AIK VGT      I+  + +  F S  DF  R+   D   +N+R +ESL+ AGA
Sbjct: 826  IIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESLIKAGA 885

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSS 949
                G +R  L+    +I    Q   KN      N+F   E     D+    +    + S
Sbjct: 886  FTSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNADDDRDDFTRREEFDKS 945

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------RGNNIRLAAMVVS 1003
                 E+ VLG Y S HPL  Y  I+ K       +            G  +++  +V S
Sbjct: 946  ELLRMEKEVLGIYLSDHPLRAYSNIIGKYSNFSTGDLEDDAYNEKNFDGKRVKVVGIVES 1005

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +K T+    + +V F +     E   FP
Sbjct: 1006 INKKFTKNQKIMEFVKFEDLYGTMELIVFP 1035


>gi|330994074|ref|ZP_08318004.1| DNA polymerase III subunit alpha [Gluconacetobacter sp. SXCC-1]
 gi|329759020|gb|EGG75534.1| DNA polymerase III subunit alpha [Gluconacetobacter sp. SXCC-1]
          Length = 1144

 Score = 1021 bits (2640), Expect = 0.0,   Method: Composition-based stats.
 Identities = 478/1035 (46%), Positives = 665/1035 (64%), Gaps = 27/1035 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VHS+YSL +GA+ +  ++      + PA+AITDT N+F ALEFSQ     G+QP
Sbjct: 5    DFVHLRVHSAYSLSQGAIRVPELVALAHDMRMPAVAITDTGNMFGALEFSQYCGKKGVQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGCQ        L + ++   P      +VLL   AEG   L  L S  +L        
Sbjct: 65   IIGCQ--------LGLPSRSDKPGMPAEHVVLLARNAEGLANLQFLSSAGFLQT-VTDEP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + L  L E    GL +LTGGS GP+         + A + +      +G  + V L RH
Sbjct: 116  TVTLDLLCERAG-GLFLLTGGSRGPLFHMLAEGQEREATRFMERLHAAYGRYMAVELHRH 174

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +R  E  ++ +A    LPLVATN   F   + YEAHD L+ +A    ++++DR RV
Sbjct: 175  GQAAERAVEPGMIAMADRMGLPLVATNECFFPKPDMYEAHDALLCIAQGRTMAERDRWRV 234

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            TP+H+ K    M  +F+DLPEA +NT+EIAR C+  ++   P+LP   + +     K E+
Sbjct: 235  TPEHWFKPAEAMRELFADLPEACDNTLEIARLCAIKVETCKPLLPMCPKVQ---PGKTED 291

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LRN A  GL  RL++  + +    + Y +RL FEL++IA M F GYF+IVADFIQWAK
Sbjct: 292  ETLRNMARTGLARRLSRMDVDE-ETRRKYEERLAFELDIIANMGFPGYFMIVADFIQWAK 350

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +++IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQDRRD
Sbjct: 351  EHDIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQDRRD 410

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVIRYV+N+YG +RVAQIITFG LQA+AA+RDVGR L +P+  V+R+ +LIPN+PA PV+
Sbjct: 411  EVIRYVRNEYGADRVAQIITFGKLQARAAVRDVGRVLGLPFGMVNRVAELIPNNPAQPVT 470

Query: 489  LQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L+ AI  + R +E R  D ++ RLLEI Q+LEGL+RHASTHAAG+VIGDR L +LVP+YR
Sbjct: 471  LKQAIEGEPRLQEMRDEDEAIRRLLEIGQQLEGLFRHASTHAAGVVIGDRELVELVPLYR 530

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+LQ+++ FL   GV VDLS +P DD  
Sbjct: 531  DPKSDMLVTQYNMKFVEQAGLVKFDFLGLTTLTILQRAVQFLHGMGVAVDLSALPLDDPL 590

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L    T G+FQ E +GMR  L+ M+P  +ED+IA V+LYRPGP+ NI  Y  RK+G
Sbjct: 591  TYEMLARGDTGGVFQFEGAGMRDVLKQMRPTRLEDLIAAVALYRPGPMANIPDYCRRKHG 650

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E     H  I  +L+ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+EEMD+
Sbjct: 651  -EAWEPPHEEIRDILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIREEMDR 709

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+E F  GA K GI +  A  +F+L+AKFADYGFNKSHAAAYA++SYQTAWMK ++PV F
Sbjct: 710  QREIFTEGAMKRGIEREKAAEVFDLMAKFADYGFNKSHAAAYALVSYQTAWMKANHPVAF 769

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDNRIYYSLAA 841
            +AA M+L  +  +K+    Q+A +  I ++PP +N    DF V      G   I Y+LAA
Sbjct: 770  IAACMSLAREKTDKLAGLRQEADRLGIPLLPPDINASGADFTVEKLPDGGGYAIRYALAA 829

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +K VG    + ++    D+PF  LED  +R+D +++N+  LE+L  AGA D    +R + 
Sbjct: 830  VKKVGLGAMQSLVAVRGDRPFVDLEDLAARLDPRQVNKMQLENLARAGAFDTILPNRARA 889

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENSSVRFENEQRVL 959
              + + + + AQ   +   +    +F       +  + + + + +      R   E   +
Sbjct: 890  CGAAETVMRRAQANAQQAASGQIGLFGGGGDGPAAREPLRMPRVADWPEFERLNMEADAI 949

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN--NIRLAAMVVSKQQKKTRKGSRIGW 1017
            GF+ +GHPLD Y P++R++G        A  +     +++A  VV ++++ TR G+++ W
Sbjct: 950  GFHLTGHPLDSYGPLMRRLGAVRATGLEAAAQAGIVRVKIAGCVVDRKERPTRTGNKMAW 1009

Query: 1018 VTFSEPAKEYEANFF 1032
            V  S+ +   E  FF
Sbjct: 1010 VRLSDASGGCEITFF 1024


>gi|325281577|ref|YP_004254119.1| DNA polymerase III, alpha subunit [Odoribacter splanchnicus DSM
            20712]
 gi|324313386|gb|ADY33939.1| DNA polymerase III, alpha subunit [Odoribacter splanchnicus DSM
            20712]
          Length = 1254

 Score = 1021 bits (2639), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1105 (32%), Positives = 586/1105 (53%), Gaps = 96/1105 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F H  VHS YS+L+GA S+  +++K  AD Q A+A+TD  N+F    F       GI+PI
Sbjct: 3    FTHFHVHSQYSILDGAASIPGLIEKAKADGQTALALTDHGNMFGIKLFYDTCRQKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+  +     + + N+ K    +   +++L     GY  L++L S  +  D      R
Sbjct: 63   LGCEAYVA---RVSLYNKEKPIDRSGEHLIILAKNLTGYLNLVKLCSTAFC-DGFYYRPR 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I  + L E   EGLI+ +    G ID+       + AEK  L +K LFG+  Y+ + RH 
Sbjct: 119  IDKTQL-EKHHEGLIISSACLGGEIDQKIMAGDLEGAEKAALWYKNLFGEDYYLEVMRHP 177

Query: 191  GYDRYRESQV-----------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              D  + +++           +++A    + L+ATN+  FL+EED EAHD+L+ +     
Sbjct: 178  AADPKQRAEIYDNQQRCIQEKIKIARKLNIKLIATNDVHFLNEEDAEAHDLLICLNTRKD 237

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +    R R T   + K   EM+ +F DLPEA+ENT EI  +         P++P F    
Sbjct: 238  IDDPTRMRYTRQEWFKTTQEMIDLFPDLPEAIENTQEITDKVEEYELDSDPLMPVFPIPP 297

Query: 300  CDDIQKE-----------------------------------------------EENELR 312
                ++E                                               E + L+
Sbjct: 298  ELGTEEEYRQKFSQEDLFNEFTRDEKGNVVLTEEEANKKIKKLGGYDRLYRIKLEADYLK 357

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
               + G+  R  +        + +  +R+ FEL+++  M F GYFLIV DFI+ A+   +
Sbjct: 358  ELTMKGVVKRYGENP------SPEIMERIIFELHIMKTMGFPGYFLIVQDFIRAARDMGV 411

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS  AY L IT+IDP+++ LLFERFLNPDR+S+PD D+DF    R +V+ 
Sbjct: 412  IVGPGRGSAAGSAVAYCLGITNIDPIKYDLLFERFLNPDRISLPDIDVDFDDAGRQQVLE 471

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            +V  KYG ++V+ I+TFGS+ AK A++DV R L++  S+ +RL K++P  P   +  +A 
Sbjct: 472  WVTEKYGADKVSHIVTFGSMAAKMAIKDVARVLKLELSEANRLAKMVPEAPKMTLK-KAY 530

Query: 493  ADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
             ++    + + + +P + + ++ ++ LEG  R    HA GI+I   PL+  +P+      
Sbjct: 531  KENPDLEKEKQSLNPLISKTIQFAETLEGSIRQTGVHACGILISRDPLTDHIPIMPTEGE 590

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYH 610
             L  TQ++  ++E  GLIK DFLGL+TL++++  LD + + + + ++ + IP DD ET+ 
Sbjct: 591  SLMTTQYDGHFVEPIGLIKMDFLGLRTLSIIKTCLDNIKKSKHIVLNENEIPLDDEETFK 650

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L T   T G+FQ ES GM++ L  +QP+  ED++A+ +LYRPGP++ I  +  RK+G+E 
Sbjct: 651  LFTRGDTTGLFQFESPGMKKHLRALQPNRFEDLVAMNALYRPGPMEYIPSFIRRKHGEEP 710

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I   HP+++P LK+T G+ +YQEQVM  ++ L  ++  ++D LR+AMGKK  E + + K 
Sbjct: 711  IEYDHPMMEPYLKDTYGITVYQEQVMLQSRALGLFTRGQSDTLRKAMGKKKFELLAELKG 770

Query: 731  RFISGA----------SKNGIS-KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            +F+ G            + G   + +   I+     FA Y FNKSH+  YA I+YQT ++
Sbjct: 771  KFVEGCKNNPDFVQGAKEKGKDVEELVNKIWGDWEAFASYAFNKSHSVCYAYIAYQTGFL 830

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP EF+AA+++  + ++ K+  F  + ++  + ++ P VN    DF V    +I + 
Sbjct: 831  KAHYPAEFMAANLSNNLSDITKVTVFMDECKRMGLSVLAPDVNESYNDFTVNSHGQIRFG 890

Query: 839  LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            +AAIKGVG      I+E    + P+  + DF  R+D K +N++ +E+LV AG LD FGY 
Sbjct: 891  MAAIKGVGEAAVEKIIEEREKNGPYKDVYDFFERIDYKSVNKKTIENLVTAGGLDSFGYH 950

Query: 898  RMQLLQ-------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            R Q L         LDN+  Y Q  +++  N    +F    G    K  +      +   
Sbjct: 951  RAQYLHLVDATTTVLDNLVNYGQKNQQDSMNLQATLFGELDGFEVTKPNIPDCEPWHDYE 1010

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIRLAAMVVSKQQK 1007
            + + E+ ++G Y + HPLD YK  ++ +     EE    + T +G  I +A ++ +K++ 
Sbjct: 1011 KSKKEKELIGIYLTSHPLDPYKLEMQLL-CTPVEELNSGLETFKGKEINIAGIITAKREG 1069

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
            KT+ G   G +T  + +  YE  FF
Sbjct: 1070 KTKTGKDFGILTLEDFSGTYELAFF 1094


>gi|187929482|ref|YP_001899969.1| DNA polymerase III subunit alpha [Ralstonia pickettii 12J]
 gi|309781742|ref|ZP_07676475.1| DNA polymerase III subunit alpha [Ralstonia sp. 5_7_47FAA]
 gi|187726372|gb|ACD27537.1| DNA polymerase III, alpha subunit [Ralstonia pickettii 12J]
 gi|308919383|gb|EFP65047.1| DNA polymerase III subunit alpha [Ralstonia sp. 5_7_47FAA]
          Length = 1172

 Score = 1021 bits (2639), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1061 (38%), Positives = 606/1061 (57%), Gaps = 53/1061 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SP FVHL++HS YS+++G + L++ +   A D   A+A+TD  N F  + F ++A   G
Sbjct: 2    NSPRFVHLRLHSEYSVVDGNVRLDDAVKAAAKDGMGALALTDLANAFGLVRFYKEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI+G  + I   D                 ++LLV   +GY  L +L++R +L +Q +
Sbjct: 62   VKPIVGADVWITNHDE----------RDKPTRLLLLVRDKQGYLNLCQLLARAWLSNQHR 111

Query: 127  QSVRICLSWLQEIG------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                I   W  E G        GL+ L+G  +G I       +  +A K    + ++F  
Sbjct: 112  GRAEIAPEWFDEPGVENAPLATGLLALSGAMAGDIGMTLANGNDALARKLATNWSRVFPG 171

Query: 181  RLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
              Y+ LQR  H G + Y   Q V+LA   +LP+VAT+   F++ +D+ AH+    +A   
Sbjct: 172  AFYIELQRAGHAGTEAYI-QQAVKLASAMQLPVVATHPVQFMTPDDFTAHEARTCIAEGE 230

Query: 239  VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            +++   R R  T + Y K + EM ++F+D+P AL N+V+IA+RC+  L++  P LP F  
Sbjct: 231  LLANPRRARRFTTEQYFKTQDEMCALFADIPSALANSVQIAQRCNLKLELGKPKLPLFPT 290

Query: 298  KECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
             +   +    ++ L   A  GLE R   L      +     +Y  RL+FE   I +M F 
Sbjct: 291  PDGMSL----DDYLVQLAKEGLEKRMEVLFPDEAVRESKRAEYYARLEFETGTIIKMGFP 346

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+S
Sbjct: 347  GYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVS 406

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFDIDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD 
Sbjct: 407  MPDFDIDFCQHGRDRVIQYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDG 466

Query: 475  LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            + KLIP  P   V+L+ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++
Sbjct: 467  VAKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVL 526

Query: 534  IGDRPLSQLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            I    L+   P+Y     D   V+Q++   +E  GL+KFDFLGL TLT+L  +  ++   
Sbjct: 527  IAPGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRML 586

Query: 593  GV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                   + S IP  D + + +L T  T+ +FQLES GM+  L+  +PD  EDIIALV+L
Sbjct: 587  DPSKADWNCSHIPLTDKKAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVAL 646

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  
Sbjct: 647  YRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGG 706

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM + +  F +GA+K+G+S   A  IF+L+ KFA YGFNKSHAAAY
Sbjct: 707  ADLLRRAMGKKKAEEMAEHRALFRAGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAY 766

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVDF 828
            A+++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DAR    + ++PP +N     F
Sbjct: 767  ALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNGLTVLPPDINASQYRF 826

Query: 829  -KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   I Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV 
Sbjct: 827  APTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVR 886

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSV 945
            AGA D    +R QLL S+          +K       ++F    G  +++    L     
Sbjct: 887  AGAFDSLNANRAQLLASIG--LAMEAAEQKAAAANQVSLFDLMSGDDAEQHRPELVDEPA 944

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA------------TIRGN 993
              +  + + E++ LGFY SGH  D  +  +R+       +                    
Sbjct: 945  WTTKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVTDKGNGGGYGNRDAR 1004

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032
            N  +A ++V ++ + T++G  +  V   + +     E   F
Sbjct: 1005 NKTVAGVIVGQRTQMTQRGK-MLIVMLDDGSASEATEVTVF 1044


>gi|295093096|emb|CBK82187.1| DNA polymerase III catalytic subunit, DnaE type [Coprococcus sp.
            ART55/1]
          Length = 1194

 Score = 1021 bits (2639), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1062 (33%), Positives = 570/1062 (53%), Gaps = 49/1062 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+GA  ++ ++ +       ++AITD   ++  +EF +     GI+PI
Sbjct: 3    FTHLHVHTGYSLLDGAAKIDGLVRRAKELGYDSLAITDHGVMYGVIEFYETCLREGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +          +          +VLL     GY  L ++V+R +         R
Sbjct: 63   LGCEVYVSPGSRFDR--EVGKGDDRYYHLVLLAENDLGYHNLSKIVTRGFTEG-FYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            + +  L++   EG+I L+   +G +           A++  + ++ +F  +  ++ +Q H
Sbjct: 120  VDMEVLEKYH-EGIIALSACLAGEVATKLRKGDYDGAKETAIRYRNIFGEENYFLEMQDH 178

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++    + +++L+    +P+V TN+S ++  ED+EAHDVL+ +  +  V  ++R R 
Sbjct: 179  GIPEQATVNAGIMRLSKELGIPMVVTNDSHYIYAEDWEAHDVLLCIQTNHKVQDENRMRY 238

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 YLK++ EM  +F    EALENT +IA RC+  +      +PRF   E        
Sbjct: 239  DGGQFYLKSKEEMAELFPYALEALENTHKIAERCNVNIVFGEQKVPRFDVPEG----YTA 294

Query: 308  ENELRNKAVAGLEVRL-----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            E  L +    G+E +        G +A+G H  + RQR+D+EL+VI  M F  YFLIV D
Sbjct: 295  EEYLDHLVYEGMEKKYGLTYEESGKMAEGTHGYEVRQRIDYELSVIKSMGFVDYFLIVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI +AK   I VGPGRGS  GSV AY L IT I+PL+++LLFERFLNP+R+SMPD DIDF
Sbjct: 355  FIHFAKSQGIAVGPGRGSAVGSVVAYCLDITTIEPLQYNLLFERFLNPERVSMPDIDIDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C  RR EVI Y   KYG E V QII + ++ A+  +RDVGRA+ +PY+  D L K IP +
Sbjct: 415  CYIRRQEVIDYCVRKYGEECVTQIIAYQTMGARNVIRDVGRAMDLPYAVCDSLAKAIPAE 474

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                + + A+     FR+       + +L++I++KLEGL R+A  HAAG+VIG   + + 
Sbjct: 475  KDMTIDI-ALKTSKDFRDMYEGSDEIKKLVDIARKLEGLPRNAGMHAAGVVIGREAIEEY 533

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601
             P+         VTQF    +E  G++K DFLGL+T T++Q ++  + Q     +D+  I
Sbjct: 534  APLSVGA-EGAVVTQFEKNTVEHLGMLKMDFLGLRTATVVQDTVKLVKQTTGKDIDIDNI 592

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +DD     L+    T G+FQLES GMR  +  ++P  ++D+IA V+L+RPGP+  I  Y
Sbjct: 593  DYDDPNILGLMGQGKTEGMFQLESEGMRNFMMKLKPQSLDDVIAGVALFRPGPMQFIDDY 652

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K  +E +    P ++ +L+ T G IIYQEQVMQI   L+GY+L  +D++RRAM KK 
Sbjct: 653  IRGKENRELVHYDTPELEEILEPTYGCIIYQEQVMQIVMKLAGYTLGRSDLVRRAMAKKK 712

Query: 722  KEEMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
             EEM+K++  F+ G  +        NGIS+T+A  IF+ + KFA+Y FNKSH+ AYAV++
Sbjct: 713  PEEMEKERHNFVYGNKELNVPGCVANGISETVANKIFDEMMKFAEYAFNKSHSVAYAVLA 772

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
             QTA++K +YPVEF+AA M+  +DN  K+ K+    +Q  ++++PP +N     F + + 
Sbjct: 773  AQTAYLKYYYPVEFMAALMSSVIDNNGKVAKYISVCKQMGVEVLPPDINEGVAKFSISNG 832

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +I Y L+ IK VG      I      + PF  L +F +R+ SK  N++ +E+L+ +GA D
Sbjct: 833  KIRYGLSGIKSVGGAVVDRIEAERTKNGPFKDLRNFLTRMPSKDTNKKTVEALILSGAFD 892

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--SDKITLEKFSVENSSV 950
              G +R Q++ +L  I + A    K+R +   ++F      F  S+ +        +   
Sbjct: 893  DMGANRKQMMMALPAIAEEAARERKSRESGQMSLFDLMGDDFVQSNLVPYPDVEEYSDQE 952

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-------------------VATIR 991
            +   E+ VLG Y SGHPL  Y  ++++       +                         
Sbjct: 953  KLALEKSVLGVYISGHPLGKYIELMQRTCTAQATDFVVDTEDDDEMSRDQGDGDGQKLQD 1012

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 +  ++     K T+    + +VT  +   + E   FP
Sbjct: 1013 NAMYVIGGLISRVTVKLTKNNQNMAYVTIEDLVGQVEVIVFP 1054


>gi|315636761|ref|ZP_07891990.1| DNA-directed DNA polymerase III alpha subunit [Arcobacter butzleri
            JV22]
 gi|315478978|gb|EFU69682.1| DNA-directed DNA polymerase III alpha subunit [Arcobacter butzleri
            JV22]
          Length = 1187

 Score = 1021 bits (2639), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/1065 (37%), Positives = 604/1065 (56%), Gaps = 48/1065 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F HL +H+ YSLL+GA  +  +  K+      ++A+TD  N+F A+ F      
Sbjct: 1    MSQIPQFTHLHLHTEYSLLDGANKIKPLAKKLKKLGMTSVAMTDHGNMFGAIAFYNAMRD 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   +++      +        + L      GY+ L+ L S+ Y+ + 
Sbjct: 61   EGIKPIIGMEAYIHNSEDISDKTNRQR-----YHLCLYAKNEIGYKNLMYLSSQAYI-NG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTF 174
                 RI    L+E  +EGL+       G I+            F     + A+K  L +
Sbjct: 115  FYYYPRINKKILKE-NSEGLVCSAACLQGEINWHLNTQSERNVKFGAKGYEEAKKIALEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            K++FGD  Y+ + RH   D+ + + Q+++L+    + +VATN++ +L ++D +AH+  M 
Sbjct: 174  KEIFGDDFYLEIMRHGISDQLFVDDQILKLSKETGIKVVATNDTHYLEQKDADAHEAFMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +A + +    +R R +  + YLK+  ++  ++SD+PEA+E T EIA +C+  +++  P  
Sbjct: 234  IAMNKLYDDPNRLRHSVHEFYLKSPEQIAKLYSDIPEAIEATQEIADKCNLTIKLGNPTP 293

Query: 293  PRF--------------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
            P F               E E +   + ++    ++   GLE RL    I    H Q+YR
Sbjct: 294  PNFKFTRQKSQEAGLILPEPELEYSLENDKILFIHECRIGLEDRLK---IVPTEHHQEYR 350

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             RL+ E+ +I  MKF GY LIV DF+  AK+  IPVGPGRGS AGS+ A++L ITDIDP+
Sbjct: 351  DRLEVEIEIINNMKFPGYMLIVWDFVIVAKRMGIPVGPGRGSAAGSLVAFSLKITDIDPI 410

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
             + LLFERFLNP+R+SMPD D+DFCQ RR E+I YV  +YG   VAQIITFG L AK  +
Sbjct: 411  PYGLLFERFLNPERVSMPDIDMDFCQSRRGEIIDYVVQQYGRANVAQIITFGKLLAKGVI 470

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
            RDV R L MPYS+ D + KLIP++    +   +   + + +E   ADP   R+ E +  L
Sbjct: 471  RDVARVLDMPYSKADAMAKLIPDELGIDLK-NSWEKEPKIKELCEADPQAARVWEYALAL 529

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R+A THAAG+VI + PL +  P+++    D   TQ+N K+IE   LIKFDFLGLKT
Sbjct: 530  EGLNRNAGTHAAGVVISNEPLWKKTPLFKPSGLDTLATQYNGKYIEDVDLIKFDFLGLKT 589

Query: 579  LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT+++++   + QR   +V+      +D   Y L+ T  T+G+FQ+ES GM+   + ++P
Sbjct: 590  LTVIEEANKLIEQRHGKRVNFITTDVNDKGVYDLIQTGNTIGLFQIESDGMQDLCKRLKP 649

Query: 638  DCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLID----PMLKETQGVIIY 691
               EDIIA+++LYRPGP+++ +   +  RK+G+ KI   H  ++    P+L+ T GVI+Y
Sbjct: 650  SNFEDIIAVLALYRPGPMESGMLDDFIERKHGRAKIDYFHDELESALKPILENTYGVIVY 709

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQI Q + G+SL  AD++RRAMGKKIKEEMD+ K  F  GA   G ++  A  +F+
Sbjct: 710  QEQVMQIVQSVGGFSLGGADLVRRAMGKKIKEEMDRLKGEFADGAQNKGYTRAYAEELFD 769

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            L+ KFA YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE DN +K+ K+  + ++
Sbjct: 770  LIVKFAGYGFNKSHSAAYALVTFYTSYLKCYYPAEFMAALLTLEKDNTDKVVKYVDETKR 829

Query: 812  FNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
              +++ PP +N   + F      G   + + + AIKG G      I+ A  + PF  L D
Sbjct: 830  LGLELFPPDINKSDLVFSAKKIDGKEVVMFGMGAIKGAGDVAINAILNARGNAPFKDLPD 889

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F SR+D  K+N+RV+ESL  AGA D FGY+R  LL  ++ I          +     ++F
Sbjct: 890  FISRIDGSKVNKRVIESLTKAGAFDSFGYTRKSLLNQIEKIVDTVGKAATAKKMMTGSLF 949

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +      I LE  +  +     E E+  LGFY SGHPLD YK  L K+      +  
Sbjct: 950  GDSEELTKIDIELEHLNEFDPKELLEFEKATLGFYVSGHPLDEYKKDLEKINFTLSSQID 1009

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                G+       + S  +K ++KG++ G V+  +     E   F
Sbjct: 1010 ELEDGSQALFVGKIESITEKTSKKGNKFGIVSILDFHGTIEFMLF 1054


>gi|282856832|ref|ZP_06266091.1| DNA polymerase III, alpha subunit [Pyramidobacter piscolens W5455]
 gi|282585342|gb|EFB90651.1| DNA polymerase III, alpha subunit [Pyramidobacter piscolens W5455]
          Length = 1155

 Score = 1020 bits (2638), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1041 (36%), Positives = 599/1041 (57%), Gaps = 38/1041 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    +FVHL VH+ YSLL+GA+   ++  + A    PA+A+TD   ++ A+EF Q+  +
Sbjct: 1    MSAEKNFVHLHVHTEYSLLDGAIRCADLAKRCAEWGMPAVAMTDHGVMYGAVEFYQQCKS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIGC++ +          +          ++LL    EGY  LI+LVS       
Sbjct: 61   AGVKPIIGCEMYVSPDGIDNKEKK-------YNHLLLLAENDEGYHNLIKLVSIANTRG- 112

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
                 R+    L +  ++GLI  +   +G I R       + A +R   ++ +F  +  +
Sbjct: 113  FYYKPRVDHQLLAQY-SKGLICSSACLAGEIPRFLLEGDEKGALERAQMYRDIFGAESFF 171

Query: 184  VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +  ++  ++      ++++A  +  PL+ATN++ +L+  DY+ H++L+ V    V++ 
Sbjct: 172  LEIMPNQLPEQVAVNKMIIEMARKNNFPLLATNDAHYLNSSDYDWHELLLCVGTKKVITD 231

Query: 243  KDRPRVT-PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFI--LQVHAPILPRFIEK 298
              R      D Y ++  EM   F S+ P++LENT+ IA RC F   L     +LP+F   
Sbjct: 232  PGRMSFRVNDFYFRSAQEMWGYFGSEAPDSLENTLRIAERCHFDFALNTGDYLLPKFEIP 291

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E   +    +  L   A +GL+ RL    I       +Y  RL +EL +I +MKF GYFL
Sbjct: 292  EGMTL----DTYLEKMARSGLKERLGVEVI-----PDEYENRLSYELGIIKQMKFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            I+AD I   K + IP+GPGRGS AGS+ AY++ IT++DP+RF L+FERFLNP+R+SMPD 
Sbjct: 343  IIADVIGACKSHGIPIGPGRGSAAGSLVAYSMKITELDPIRFGLIFERFLNPERVSMPDI 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D D     RD +I+YV +KYG E V+QIITFG +++K A++DVGRA+ MPY+ V+++  L
Sbjct: 403  DTDVSDKGRDRLIKYVVDKYGVENVSQIITFGRMKSKQAIKDVGRAMGMPYADVNKVANL 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +P+        +A+      ++   +D  + +LL  +  +EGL RH S HAAG+VI  +P
Sbjct: 463  VPD--GAKSIKEAVEQTPDLQDLEKSDSQISKLLTSASSMEGLARHCSQHAAGVVITPKP 520

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VD 597
            L+ LVP+ R +      TQF+M  +   GL+K DFLGL+TL++L++++  + + G    D
Sbjct: 521  LTDLVPV-RQIEEGQVATQFSMDPVASLGLVKMDFLGLQTLSILEEAVANVKRNGTTLGD 579

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD E Y LL    TLGIFQLESSGMR+ ++ MQPD   D++A+++LYRPGP+++
Sbjct: 580  LNRLPLDDPEVYRLLQNADTLGIFQLESSGMRRLIKKMQPDRFADLVAILALYRPGPLES 639

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  Y N K+G E++  +HPL++P+L ET GV++YQEQVM+ A  L+GY+L  AD+LRR
Sbjct: 640  GMVDQYVNCKHG-EEVHYLHPLLEPVLNETYGVVLYQEQVMKCASTLAGYTLGGADLLRR 698

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK K  MD+ +  FI+GA+KNGI       IF+++ KFA YGFNKSH+AAYA+++YQ
Sbjct: 699  AMGKKKKSVMDEHRSIFINGAAKNGIDAEKGAEIFDIIEKFAGYGFNKSHSAAYALVTYQ 758

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKI-KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            TAW+K HYP EF+AA ++ ++   +++  ++ ++ R   I ++ P +N    DF    N 
Sbjct: 759  TAWLKVHYPKEFMAAYLSSKIGAKKEVMAEYVREVRASGIDVLAPDINQSYADFTATKNE 818

Query: 835  IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L  +  VG      I +A  +  PF    DF  RVD   + + V+ESL+ AGA D 
Sbjct: 819  IRFGLGGVTKVGEAALNSIFKAREEGGPFKGFWDFIVRVDKHSVGKAVIESLIKAGAFDS 878

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R QLL SLDN+ + A    ++      ++F     T  D+  L +    N + + E
Sbjct: 879  LNSNRKQLLTSLDNLFEVASR--RDSQGDQGSLFGDM--TSEDQPELAEVDDLNITEKLE 934

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKG 1012
             E+  LG Y SGHP D ++ +  +       +             A ++   Q+K T++G
Sbjct: 935  MEKEALGMYISGHPFDGFRRLAAQKANARIADLPYWKSDTTTPTFAGLLSGWQEKMTKRG 994

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              +G  +  +   E +   FP
Sbjct: 995  DAMGIFSIDDGEDEIKVICFP 1015


>gi|331696645|ref|YP_004332884.1| DNA polymerase III subunit alpha [Pseudonocardia dioxanivorans
            CB1190]
 gi|326951334|gb|AEA25031.1| DNA polymerase III, alpha subunit [Pseudonocardia dioxanivorans
            CB1190]
          Length = 1185

 Score = 1020 bits (2637), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1070 (33%), Positives = 551/1070 (51%), Gaps = 54/1070 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              + SFVHL  H+ +S+L+GA  L+++  + A    PA+A+TD  N++ A EF +KA AA
Sbjct: 4    ASTDSFVHLHTHTEFSMLDGAARLDDLFRESAKMGMPALAMTDHGNVYGAYEFWRKAKAA 63

Query: 66   GIQPIIGCQLDIDMQDNLKMTN--------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            G++PIIG +  +      +               P      + LL    EG   L  L S
Sbjct: 64   GVKPIIGMEGYLSPGSRHERKRATLGGQTVSDDNPGEMYTHMTLLAENTEGMHNLFRLSS 123

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               L        R+    L+  G +G+I  TG  SG + R    +    A +    ++ +
Sbjct: 124  LASLEG-YYYKPRMDRELLETYG-KGIIATTGCPSGEVARLLQQDRYDDACQAASDYRDI 181

Query: 178  F-GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  D  Y  L  H    ++  +  + +L     LP +ATN+  +   ED + H+VL+ V 
Sbjct: 182  FGRDNFYCELMDHGIEIEKRVQEDLFRLKKELGLPGLATNDLHYTYAEDTKPHEVLLCVQ 241

Query: 236  HSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILP 293
                ++  +R +    D YLK+ +EM + +  + PEA +NT+ IA R          ++P
Sbjct: 242  TGKTLADPNRFKFDAQDFYLKSAAEMRAQWDPIHPEACDNTLLIAERVDVSFTEGQDLMP 301

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            R    E +     EE+ L  +   GL  R   G        + YR++ ++EL+VI +M F
Sbjct: 302  RAPVPEGE----TEESWLVKEVEKGLHRRFPNGV------TEQYRKQAEYELSVIIQMGF 351

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYF++ AD IQ AKK  I  GPGRGS AGS+ AY L ITD+DP++  L+FERFLNP+R+
Sbjct: 352  PGYFIVTADLIQHAKKVGIRCGPGRGSAAGSLVAYVLGITDLDPIKHKLIFERFLNPERI 411

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA--LQMPYSQ 471
            SMPD D+DF + RR E+IRY   KYG +R+AQIIT+ +++AKAA++D  R    Q  YS 
Sbjct: 412  SMPDIDMDFDERRRGEMIRYTTEKYGEDRIAQIITYSTIKAKAAIKDSARVLFGQPGYSV 471

Query: 472  VDRLCKLIPN-DPAHPVSLQAIADD--------SRFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K +P       + L  I D         +  R    ADP V  +++ ++ LEGL 
Sbjct: 472  ADRITKAMPPAIMGKDIPLSGIFDPGHKRYSEATEVRALYEADPQVREIIDTARGLEGLK 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++  +PL  ++P+ R       +TQF+M   E  GL+K DFLGL+ LT++
Sbjct: 532  RQWGVHAAGVIMSSKPLLDVIPIQRREADGAIITQFDMGACETLGLLKMDFLGLRNLTII 591

Query: 583  QKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              +L+ +       + +  +  DD +TY LL    TLG+FQL+   MR  L  M P   +
Sbjct: 592  DDALENIELNGKPPLVIEDVELDDPKTYDLLARGDTLGVFQLDGGPMRDLLRRMAPTEFD 651

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQEQV 695
            DI A+ +LYRPGP+  +    Y +RKN ++++  IHP +      +L ET G+I+YQEQV
Sbjct: 652  DISAVGALYRPGPMGANAHNDYADRKNKRQEVTPIHPELAEPLKDILGETYGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M IAQ L+GY+L +AD+LRRAMGKK KE +DK+ E F  G   +G S      ++++L  
Sbjct: 712  MAIAQKLAGYTLGKADLLRRAMGKKKKEILDKEYEGFAQGMKDHGYSADAVKTLWDILLP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            F+DY FN++H+AAY V+SY TA++K +YP E++AA +T   D+ +K   +  + R+  I 
Sbjct: 772  FSDYAFNRAHSAAYGVVSYWTAYLKANYPAEYMAAVLTSVRDDKDKAAVYLAECRRMGIT 831

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            ++PP VN    +F    + I + L AI+ VG      I+ A  +   F    DF  +VD+
Sbjct: 832  VLPPDVNESVRNFAPVGDDIRFGLGAIRNVGFNVVDAIVAARKEKGAFSDFSDFLRKVDA 891

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
               N++V+ESL+ AGA D  G+SR  LL    +        +K  +    ++F    G  
Sbjct: 892  VVCNKKVIESLIKAGAFDSLGHSRKGLLLVHADAIDAVMSTKKAASMGQFDLFGSMDGGD 951

Query: 935  SDKITLE---------KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
             D                   ++  R   E+ +LG Y SGHPL   + +L        + 
Sbjct: 952  GDDSDPALAGIFDVKVPTDEWDTKHRLAVEREMLGLYVSGHPLHGVEGVLAAKADTPIQN 1011

Query: 986  SVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +      G  + +  ++    ++  + G         + A   E  FFP
Sbjct: 1012 ILDGTVGDGAQVTVGGILAGVNRRVNKNGEPWASAQIEDLAGGIEVLFFP 1061


>gi|302877644|ref|YP_003846208.1| DNA polymerase III, alpha subunit [Gallionella capsiferriformans
            ES-2]
 gi|302580433|gb|ADL54444.1| DNA polymerase III, alpha subunit [Gallionella capsiferriformans
            ES-2]
          Length = 1204

 Score = 1020 bits (2637), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1094 (37%), Positives = 596/1094 (54%), Gaps = 86/1094 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SP FVHL++HS YS+ +G   ++  +D   AD  PA+A+TD +N    ++F +K    G+
Sbjct: 3    SPVFVHLRLHSEYSITDGMARIDEAVDAAIADGMPALALTDLSNFSGLVKFYKKTRGKGL 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +P+ G  + I  +                  ++LL  ++EGY RL  L+SR YL +Q ++
Sbjct: 63   KPVAGVDVFITNE----------ADRDRPYRLLLLCQSSEGYLRLCRLLSRAYLSNQYRE 112

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   W ++ GTEGLI L+G   G +  A    +   A +    +  LF DR Y+ +Q
Sbjct: 113  RAELRREWFKDEGTEGLIALSGAHLGDVGCALMSGNVAEARRYAQGWAALFEDRYYIEVQ 172

Query: 188  RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R    D          LA   +LP+VAT+   FL+  D++AH+  + +A   V++ K R 
Sbjct: 173  RAGFADEAAYVDAATALAAGLDLPVVATHPVQFLTSADFKAHEARVCIAEGYVLNDKRRE 232

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  T   Y K ++EM  +F+DLPEAL+N+VEIARRC+  L +  P LP F     + +  
Sbjct: 233  KAFTAQQYFKTQAEMSELFADLPEALQNSVEIARRCNLTLVLGKPRLPDFPTPSGESL-- 290

Query: 306  EEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++ + +++  GL  R   L      +      Y +RL FE+N I +M F GYFLIVAD
Sbjct: 291  --DDFMLSESERGLADRMAFLYPDEAERAEKFPQYHERLLFEINTIIKMGFPGYFLIVAD 348

Query: 363  FIQWAKK-------NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            FI+WAK        N +PVGPGRGSGAGS+ AY L ITD+DPLR+ LLFERFLNP+R+SM
Sbjct: 349  FIRWAKAYRSDAFPNGVPVGPGRGSGAGSLVAYCLLITDLDPLRYELLFERFLNPERVSM 408

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFD+DFCQD R+ VI YV+ KYG   V+QI TFG++ +KA +RDVGR ++ PY   DRL
Sbjct: 409  PDFDVDFCQDGRELVIDYVKQKYGAACVSQIATFGTMASKAVIRDVGRVMEFPYGLCDRL 468

Query: 476  CKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             K IP +   PVSL +A   +        ++  V  LLE++ +LE L R+   HA G+VI
Sbjct: 469  SKAIPLEGVKPVSLQKAREMEPEINAIAESEEGVPELLELAMRLEDLTRNVGMHAGGVVI 528

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA---- 590
                L+   P+Y        V+QF+   +E  GL+KFDFLGL+TLT++  ++  +     
Sbjct: 529  APGKLTDFCPLYCADGGASVVSQFDKDDVEAIGLVKFDFLGLRTLTIIDWAVRHIHRLQA 588

Query: 591  ------------------------------------QRGVKVDLSLIPFDDHETYHLLTT 614
                                                       +  IP DD  +Y LL  
Sbjct: 589  RDRKGLPRTTNETTTELLREGSRIEDQTQVSTQSSVHNPQLFSIEAIPLDDKPSYDLLKK 648

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIV 672
              T  +FQLES GM+  ++ +QPD  EDI+ALV+L+RPGP+++ +V  + +RK+G+    
Sbjct: 649  CNTTAVFQLESRGMKDLIKRLQPDTFEDIVALVALFRPGPLESGMVDDFVDRKHGRATAD 708

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
              HP ++  LK T GVI+YQEQVMQI+Q++ GY+L  AD+LRRAMGKK   EM +Q++ F
Sbjct: 709  YFHPELEASLKPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKDPAEMARQRDIF 768

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            +SGA    I K +A  +F+L+  FA YGFNKSH+AAYA+++YQTA++K H+P  F+AA++
Sbjct: 769  VSGALNREIDKDLATRLFDLMEMFAGYGFNKSHSAAYALVAYQTAYLKAHHPAAFMAATL 828

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTAR 851
            + ++DN EK++ F  D  Q  I I+ P VN+    F   D +   Y L AIKG G     
Sbjct: 829  SGDLDNTEKVRTFYADTLQQGITILLPDVNSSGYAFSPTDEKTISYGLGAIKGTGEAAIA 888

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
             I++A A  PF  L DFC RVD + +NRR +E+L+ AGA D     R  L+ S+D     
Sbjct: 889  SIVKARATGPFKDLFDFCRRVDKRAVNRRTIETLIRAGAFDSINDHRAALMASVDAALAS 948

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            A   ++ R+   +++F  +                +   +   E+  LG Y  GHP   Y
Sbjct: 949  AD--QQARSINQDSLFGEDDADAVLIEQKSDVPRWSLREQLAFEKVSLGIYLGGHPYQEY 1006

Query: 972  KPILRKMGIKGYEESVAT-------------IRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +  L         +                  RG  +RLA +V   + ++TR+G R+  +
Sbjct: 1007 EKELTNFIKVRLGDLTPAFLGKNSGSGGYVSRRGVQVRLAGIVSGLRLQQTRRG-RMAVI 1065

Query: 1019 TFSEPAKEYEANFF 1032
            T  + + + E   F
Sbjct: 1066 TLDDGSAQIELTVF 1079


>gi|114776907|ref|ZP_01451950.1| hypothetical protein SPV1_11846 [Mariprofundus ferrooxydans PV-1]
 gi|114552993|gb|EAU55424.1| hypothetical protein SPV1_11846 [Mariprofundus ferrooxydans PV-1]
          Length = 1169

 Score = 1020 bits (2637), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1039 (39%), Positives = 616/1039 (59%), Gaps = 23/1039 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F HL VHS +SLL   L + ++L K+A  +QPA+A+TD  NLF A+EF  KA  
Sbjct: 1    MRFAP-FAHLHVHSDFSLLGSTLKIGDLLHKVAELRQPAVALTDYGNLFGAIEFYSKAMR 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI+GC++ I  +D+ K  ++G    P  P +VLL     G++ L++LVS  YL D 
Sbjct: 60   MGIKPIMGCEVFI-CEDHTKRISEGPRG-PRFPQLVLLARNNHGWKNLLKLVSISYL-DG 116

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183
                 R+    L E   +GLI ++ G +G I++       + A K  + ++ +F +   +
Sbjct: 117  FYYKPRVGKPLLSE-HADGLIAISSGWNGEIEQHLQRGDIEGARKVAIAYRDMFHEGCFF 175

Query: 184  VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +QR  G         +++LA+  ++PLVA+NN+ FL  ED+EA   + A+  +  ++ 
Sbjct: 176  IEIQRQNGSGQEQINELLIELAHELDIPLVASNNAHFLEREDFEAFQAMQALQQNRTLND 235

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                  TP++YLK+  EM  +F D+PEALENTV IA RC+  LQ     LP F   E  +
Sbjct: 236  DVSGHFTPEYYLKSYEEMQELFEDIPEALENTVHIANRCNVDLQFGNYQLPDFQPPEDME 295

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAI-AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +       +R +++ GL+ R             + Y  RL FEL+VI  M F GYFLIV+
Sbjct: 296  LSA----YMRQQSMEGLDDRWPAILAGDPDAVRETYDARLAFELDVIENMGFPGYFLIVS 351

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK   IPVGPGRGSGAGS+ AY L ITD+DP+++ LLFERFLNP+R+SMPDFDID
Sbjct: 352  DFITWAKHQGIPVGPGRGSGAGSLVAYCLKITDLDPIKYGLLFERFLNPERVSMPDFDID 411

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC  RR+E IRYV +KYG ++VAQIITFGS++AKA +RDVGR L M  ++V+ + KL+PN
Sbjct: 412  FCMSRREEAIRYVTHKYGEDKVAQIITFGSMKAKAVIRDVGRVLPMELAKVNMIAKLVPN 471

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            D    +  +A+ D+ +  +    D  V RL  ++++LEG +R+A  HAAG++IG R L  
Sbjct: 472  DLKMTLE-KALVDEPKLAKMVKEDVEVARLFALAKRLEGSHRNAGKHAAGVIIGRRELVD 530

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+++    +  V Q++M  +EK GLIKFDFLGLKTLT++  ++  + Q          
Sbjct: 531  TAPLFKVAGEEGKVVQWDMANVEKVGLIKFDFLGLKTLTVIDIAVKLVRQYESGDAAKHF 590

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP  D  T+ L+    T  +FQ+ESSGMR  L  ++PDC EDIIALV+LYRPGP++
Sbjct: 591  DITTIPMHDEATFQLMQRGQTGAVFQVESSGMRDLLTRLKPDCFEDIIALVALYRPGPLE 650

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +V  +   K+G++ I    P +  +L+ET GVI+YQEQVMQIAQLL+G+SL +AD+LR
Sbjct: 651  SGMVDTFIECKHGRQAIEYPLPQLKTILQETNGVILYQEQVMQIAQLLAGFSLGQADMLR 710

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM +Q++ F++GA K  +    A ++F+L+ KFA YGFNKSH+AAYA+ISY
Sbjct: 711  RAMGKKKAEEMAEQRKIFMAGAEKQKVDLDKAEHMFDLMEKFAGYGFNKSHSAAYALISY 770

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K HYP  F+AA+M+ +M N +K+     D R   I ++ P +N    +F+   + 
Sbjct: 771  QTAFLKAHYPRAFMAATMSCDMGNTDKLALLVTDCRNMGIDVLQPHINESDWEFRPEGDC 830

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L  IKGVG    R +++    +  F S ED   R  ++ LN+R+LE+++ AGAL  
Sbjct: 831  IRYGLGGIKGVGEAALRAVIDERKTNGEFTSFEDMIMRAPARTLNKRILEAMIRAGALQG 890

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                +   L+ L  + +      K   +    +F   +   +D          +     +
Sbjct: 891  LIPHQRAALEGLGEVLENLSRKRKEFASNQSFLFTVAEPESADG-GFPTLPAWSPGESLQ 949

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ VLGFY +GHPL+ +      +G     E      G  I +   + S +Q +  +G+
Sbjct: 950  AEREVLGFYLTGHPLEAWLKRTTGLGDCNLSELKEREEGAEIVVPVGISSIRQYQGGRGT 1009

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + +V   +   + E   F
Sbjct: 1010 -MAFVQLEDLHGQAEMVCF 1027


>gi|71898629|ref|ZP_00680799.1| DNA polymerase III alpha subunit [Xylella fastidiosa Ann-1]
 gi|71731576|gb|EAO33637.1| DNA polymerase III alpha subunit [Xylella fastidiosa Ann-1]
          Length = 1193

 Score = 1020 bits (2637), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1078 (38%), Positives = 624/1078 (57%), Gaps = 74/1078 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             + SFVHL +H+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  L I              P  T   + LL     GY  L
Sbjct: 62   FALIKFYKAAETVGIKPISGADLLIA------------EPEHTPWGMTLLCRDHTGYLNL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
             +L+SR +L     +  V +   W+++   + L  L G     + + F    + +AE++L
Sbjct: 110  SQLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIG-RHSLVGQLFAKGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R         +Q  +Q+A    +P++A+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + +A   ++    RPR  +   YL++  EM ++F+D+P+AL+NT  +A+RC+  +++  
Sbjct: 228  RVCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +     + +    ++ +R ++  GLE RL +  +A G   +DY  RL+FEL+ I 
Sbjct: 288  YFLPNYPVPNDETL----DSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M FSGYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC +RRDEVI YV  KYG ERV+QIIT+G++ AKA +RDVGR L  PY
Sbjct: 404  PERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADD------SRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIP+     +       +      +   +   A+  V  LL ++++LE L R
Sbjct: 464  GLVDSVAKLIPSTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PL++  P++ +   +     PVTQF+   +E+ GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRGV-----KVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  + +R        VD++ +P DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINKRHARACIDPVDITALPLDDIPTYKDVFASGNTSAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +  RK+G ++ +   P    +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+    A  IF+L+
Sbjct: 704  QVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  +AR  N
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLN 823

Query: 814  IQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
            ++++ P++N     F+        Y L AIKGVG +    I++      P+ SL DFC+R
Sbjct: 824  LKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930
            V S KLNRR LE+++ AGALD  G +R  ++  L  + K  + + + R +   ++F + +
Sbjct: 884  VTSAKLNRRALEAMIQAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNAD 943

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE----- 985
             GT + ++ L +      +     E+  LG YFSGHP D Y+  ++++            
Sbjct: 944  PGTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALER 1003

Query: 986  -SVATIRGN----------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +  RGN          N  LA +VVS ++    KG    +V   +     E + F
Sbjct: 1004 ILGSQQRGNGEKRTWQSEVNTILAGLVVSVRR----KGDSQVFVQLEDGRGRIECSAF 1057


>gi|300088655|ref|YP_003759177.1| DNA polymerase III subunit alpha [Dehalogenimonas
            lykanthroporepellens BL-DC-9]
 gi|299528388|gb|ADJ26856.1| DNA polymerase III, alpha subunit [Dehalogenimonas
            lykanthroporepellens BL-DC-9]
          Length = 1211

 Score = 1019 bits (2636), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1041 (37%), Positives = 579/1041 (55%), Gaps = 38/1041 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ +SLL+G   +  ++ +       A+AITD   ++ AL+F ++  A  I+PI
Sbjct: 2    FTHLHVHTEFSLLDGMCRIPALVHRAKELGMTALAITDHGTMYGALKFYRECLAQDIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +     L  T  GK        +VLL     GY+ L++LVS            R
Sbjct: 62   IGCEVYVAPGSRLDKTPAGK----NHRHLVLLARNNTGYRNLLQLVSLANTEG-FYYKPR 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    L +   EGLI L+   SG + R    N    A +    ++  F    Y  +QRH 
Sbjct: 117  VDREILAKY-REGLIALSACPSGEVPRLILENRLSEARETAEWYRDNFDGDFYFEIQRHP 175

Query: 191  GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              +     + ++ L+   ++PLVAT ++ ++  ED + HD+L+ +    +V    R ++ 
Sbjct: 176  MPEFDRINNALIDLSRELDIPLVATGDTHYVRREDAQTHDLLLCIGTGAMVKDTSRMKMQ 235

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D  YLK+ +EM  ++ D+PEALENT  IA +C   L+     LP+             +
Sbjct: 236  ADSFYLKSEAEMAELYRDIPEALENTNRIADKCDLKLEFGRVHLPQIDRPAG----LTSD 291

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L       L              ++  R+RL +EL VI + +F+ YFL+V D I++ K
Sbjct: 292  EYLSQLCHEALPRLYPDA-------SEAVRERLTYELEVIEKTQFADYFLVVWDIIRFVK 344

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  G  RGS A S+    L IT++DPL ++L+FERFLN +R  MPD D+DF  DRRD
Sbjct: 345  ERGIYFGV-RGSAAASIVLRCLDITEVDPLEYNLVFERFLNIERKEMPDIDMDFQDDRRD 403

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV  KYG + VAQIITFG+L A+AA+RD GRAL +    VDR+ +LIP  P   + 
Sbjct: 404  EVIEYVSEKYGLDHVAQIITFGTLGARAAIRDTGRALGIDLPVVDRVARLIPFGPNMTLD 463

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR- 547
             +A+ +++  REA   D +V ++++ ++++ GL RHASTHAAG+VI   PL+   P+ R 
Sbjct: 464  -KALEENTELREAVAKDGTVQKIIDAARQVSGLSRHASTHAAGVVISKEPLALHAPLQRL 522

Query: 548  ------DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
                  D RSDL +TQ+ M+ I   GL+K DFLGL  L++L ++ + + QR    +D+  
Sbjct: 523  NRESASDARSDLVMTQYPMEDIGLIGLLKMDFLGLANLSILSRAQEIIGQRHGRPLDVHR 582

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD +T+ LL+   T+G+FQLE +GMR+ ++ ++P    DI A+V+LYRPGP++ I  
Sbjct: 583  IPLDDPKTFALLSAGETMGVFQLEGAGMRRYIKELKPTHFTDIAAMVALYRPGPMEQIPR 642

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K+G+E I   HP ++ +L+ET GVI+YQEQV+ IA+  SG+SL +AD+LR+AMGKK
Sbjct: 643  FIRSKHGEEAITYPHPALEEILQETYGVIVYQEQVLFIARTFSGFSLGQADILRKAMGKK 702

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              E M KQK+ FI+GA KNG S+ +AV +F L+  FA Y FNK+HA +YA+I+YQTA++K
Sbjct: 703  NPEVMQKQKQNFIAGALKNGYSEDLAVEVFGLIEPFAGYAFNKAHAVSYALIAYQTAYLK 762

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRI 835
             +YPVE++AA +  + D  EK+     + R+  I ++PP +N   V+F V D       I
Sbjct: 763  ANYPVEYMAAFLATQRDVAEKVAAAAVECRRLGISLLPPDINNSDVNFSVEDSSPAGPAI 822

Query: 836  YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + LAA+K VG      ++ E  +  PF S+EDFC RVD   LNRRVLESL+ AGALDC 
Sbjct: 823  RFGLAAVKNVGEAAVTGLVAERRSGGPFTSVEDFCRRVDGACLNRRVLESLIKAGALDCL 882

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRF 952
            G  R  LLQ+   +  +A+   + R +    +F    G              +++     
Sbjct: 883  G-DRATLLQNAGRLLDFAERERRIRDSGQGTLFDLFGGVAEAPPVALDLESGSATFNDIL 941

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              E+ +LG Y S HP   +   +         E    + G    LA MVV+ +  +TR G
Sbjct: 942  AWEKDLLGLYVSAHPFSRFVGKVDHDTTALCGEITEEMEGQTTTLAGMVVAVRLAQTRDG 1001

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
            +    V   +     E   +P
Sbjct: 1002 NTFANVELEDLNGRVEVIAWP 1022


>gi|163732864|ref|ZP_02140309.1| DNA polymerase III, alpha subunit [Roseobacter litoralis Och 149]
 gi|161394224|gb|EDQ18548.1| DNA polymerase III, alpha subunit [Roseobacter litoralis Och 149]
          Length = 1138

 Score = 1019 bits (2636), Expect = 0.0,   Method: Composition-based stats.
 Identities = 491/1029 (47%), Positives = 664/1029 (64%), Gaps = 55/1029 (5%)

Query: 41   QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
             PA+A+TD NN+F+ALEFS     AG+QPI+GCQ+D+       +T Q          +V
Sbjct: 1    MPALALTDKNNMFAALEFSVAMSGAGVQPILGCQVDVAY-----VTAQPGEKERAPAPVV 55

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            LL     GY+ L+ L S +Y+ D+G    ++ LS L EI  +G+I LTGG  GP+ +   
Sbjct: 56   LLAQNETGYENLMRLNSCLYI-DKGGALPQVTLSEL-EINADGIICLTGGPDGPVGQLLQ 113

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY------DRYRESQVVQLAYTHELPLVAT 214
                  A+  +   K  F DRLYV LQRH G       +R  E   V++AY  +LPLVAT
Sbjct: 114  LGQMPAAQALMDRLKAAFQDRLYVELQRHPGESGQPEKERLTERGFVEMAYAMDLPLVAT 173

Query: 215  NNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALEN 273
            N+  F   + YEAHD L+ +A    V Q+D R R+T  HY K++SEM+++F+DLPEA+EN
Sbjct: 174  NDVYFPKSDMYEAHDALICIAEGAYVDQQDDRRRLTNQHYFKSQSEMIALFADLPEAIEN 233

Query: 274  TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
            TVEIA+RC+F      PILP+F + E +        ELR +A AGL+ RL    I     
Sbjct: 234  TVEIAKRCAFQAYRRDPILPKFADDEVE--------ELRKQAHAGLKARLE--VIPHATS 283

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
             +DY +RLDFEL +I  M F GYFLIVADFI+WAK+  IPVGPGRGSGAGS+ AYALT+T
Sbjct: 284  VEDYTKRLDFELGIIEGMGFPGYFLIVADFIKWAKEQGIPVGPGRGSGAGSLVAYALTVT 343

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            D+DPLR++LLFERFLNP+R+SMPDFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L 
Sbjct: 344  DLDPLRYNLLFERFLNPERVSMPDFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALL 403

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLL 512
            +KAA+RD+GR LQMPY QVDRL K+IP +   PVS+ +A+AD+ R RE    +  V RLL
Sbjct: 404  SKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALADEPRLREEAKNEEVVARLL 463

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
               Q++EGL R+ASTHAAG+VIGDRPL  LVP+Y+D RS++P TQFNMKW+E+AGL+KFD
Sbjct: 464  NYGQQVEGLLRNASTHAAGVVIGDRPLDALVPLYQDPRSEMPATQFNMKWVEQAGLVKFD 523

Query: 573  FLGLKTLTLLQKSLDFLAQRG------------------VKVDLSLIPFDDHETYHLLTT 614
            FLGLKTLT++Q +++ +   G                   + D++ IP DD  +Y L  +
Sbjct: 524  FLGLKTLTVIQNAVEQIMASGRPLHIAADGTELYAPAAGTENDINAIPLDDERSYKLYAS 583

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
              T+ +FQ+ESSGM  AL+ M+P CIEDI+ALV+LYRPGP++NI  Y   KNG   + SI
Sbjct: 584  AKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPMENIPTYCEVKNGLRALESI 643

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            HPLID +L+ETQG+I+YQEQVMQIAQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  
Sbjct: 644  HPLIDDILEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEK 703

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            GA  NG+ K  A  +F+LL KFA+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  
Sbjct: 704  GAVANGVDKDKAREVFDLLEKFANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNC 763

Query: 795  EMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
            ++   +K+  + ++ R +  +  +PP VN     FKV +  + Y+L A+K VG    + I
Sbjct: 764  DIHLTDKLAIYFEEVRKRLELPWVPPCVNRSAATFKVEEGALIYALGALKNVGVEAMKLI 823

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
             E   DKPF +L D   RVD K++ +R LE L  +GA D    +R ++  +LD +  Y+ 
Sbjct: 824  TEGRGDKPFATLFDLARRVDLKRVGKRPLEMLARSGAFDALDANRRRVFGALDALVNYSA 883

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
             + + + +   ++F  E G    +  L        + R   E + +GFY SGHPLD Y  
Sbjct: 884  AIHEQKASNQVSLFG-EAGDDLPEPRLHPVDDWQPAERLSEEFKAVGFYLSGHPLDDYMG 942

Query: 974  ILRKM-------GIKGYEESVA--TIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
             L++             +E     T RG  N RLA +V  +Q++K+ +G+R  +   S+P
Sbjct: 943  QLKRKWGNDRGVPFMTLDELTEKVTERGAMNARLAGIVAGRQERKSARGNRFAFAQMSDP 1002

Query: 1024 AKEYEANFF 1032
               YE   F
Sbjct: 1003 TGAYEVTLF 1011


>gi|157738461|ref|YP_001491145.1| DNA polymerase III subunit alpha [Arcobacter butzleri RM4018]
 gi|157700315|gb|ABV68475.1| DNA polymerase III, alpha subunit [Arcobacter butzleri RM4018]
          Length = 1187

 Score = 1019 bits (2636), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1065 (37%), Positives = 604/1065 (56%), Gaps = 48/1065 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F HL +H+ YSLL+GA  +  +  K+      ++A+TD  N+F A+ F      
Sbjct: 1    MSQIPQFTHLHLHTEYSLLDGANKIKPLAKKLKKLGMTSVAMTDHGNMFGAIAFYNAMRD 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   +++      +        + L      GY+ L+ L S+ Y+ + 
Sbjct: 61   EGIKPIIGMEAYIHNSEDISDKTNRQR-----YHLCLYAKNEIGYKNLMYLSSQAYI-NG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTF 174
                 RI    L+E  +EGL+       G I+            F     + A+K  L +
Sbjct: 115  FYYYPRINKKILKE-NSEGLVCSAACLQGEINWHLNTQSERNVKFGAKGYEEAKKIALEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            K++FGD  Y+ + RH   D+ + + Q+++L+    + +VATN++ +L ++D +AH+  M 
Sbjct: 174  KEIFGDDFYLEIMRHGISDQLFVDDQILKLSKETGIKVVATNDTHYLEQKDADAHEAFMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +A + +    +R R +  + YLK+  ++  ++SD+PEA+E T EIA +C+  +++  P  
Sbjct: 234  IAMNKLYDDPNRLRHSVHEFYLKSPEQIAKLYSDIPEAIETTQEIADKCNLTIKLGNPTP 293

Query: 293  PRF--------------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
            P F               E + +   + ++    ++   GLE RL    I    H Q+YR
Sbjct: 294  PNFKFTRQKSQEAGLTLPEPDNEYSLENDKILFIHECRIGLEDRLK---IVPAEHHQEYR 350

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             RL+ E+ +I  MKF GY LIV DF+  AK+  IPVGPGRGS AGS+ A++L ITDIDP+
Sbjct: 351  DRLEVEIEIINNMKFPGYMLIVWDFVIVAKRMGIPVGPGRGSAAGSLVAFSLKITDIDPI 410

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
             + LLFERFLNP+R+SMPD D+DFCQ RR E+I YV  +YG   VAQIITFG L AK  +
Sbjct: 411  PYGLLFERFLNPERVSMPDIDMDFCQSRRGEIIDYVVQQYGRANVAQIITFGKLLAKGVI 470

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
            RDV R L MPYS+ D + KLIP++    +   +   + + +E   ADP   R+ E +  L
Sbjct: 471  RDVARVLDMPYSKADAMAKLIPDELGIDLK-NSWEKEPKIKELCEADPQAARVWEYALAL 529

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R+A THAAG+VI + PL +  P+++    D   TQ+N K+IE   LIKFDFLGLKT
Sbjct: 530  EGLNRNAGTHAAGVVISNEPLWKKTPLFKPSGLDTLATQYNGKYIEDVDLIKFDFLGLKT 589

Query: 579  LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT+++++   + QR   +V+      +D   Y L+ T  T+G+FQ+ES GM+   + ++P
Sbjct: 590  LTVIEEANKLIEQRHGKRVNFITTDVNDKGVYDLIQTGNTIGLFQIESDGMQDLCKRLKP 649

Query: 638  DCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLID----PMLKETQGVIIY 691
               EDIIA+++LYRPGP+++ +   +  RK+G+ KI   H  ++    P+L+ T GVI+Y
Sbjct: 650  SNFEDIIAVLALYRPGPMESGMLDDFIERKHGRAKIDYFHDELESALKPILENTYGVIVY 709

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQI Q + G+SL  AD++RRAMGKKIKEEMD+ K  F  GA   G ++  A  +F+
Sbjct: 710  QEQVMQIVQSVGGFSLGGADLVRRAMGKKIKEEMDRLKGEFADGAQNKGYTRAYAEELFD 769

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            L+ KFA YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE DN +K+ K+  + ++
Sbjct: 770  LIVKFAGYGFNKSHSAAYALVTFYTSYLKCYYPAEFMAALLTLEKDNTDKVVKYVDETKR 829

Query: 812  FNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
              +++ PP +N   + F      G   + + + AIKG G      I+ A  + PF  L D
Sbjct: 830  LGLELFPPDINKSDLVFSAKKIDGKEVVMFGMGAIKGAGDVAINAILNARGNAPFKDLPD 889

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F SR+D  K+N+RV+ESL  AGA D FGY+R  LL  ++ I          +     ++F
Sbjct: 890  FISRIDGSKVNKRVIESLTKAGAFDSFGYTRKSLLNQIEKIVDTVGKAATAKKMMTGSLF 949

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +      I LE  +  +     E E+  LGFY SGHPLD YK  L K+      +  
Sbjct: 950  GDSEELTKIDIELEHLNEFDPKELLEFEKATLGFYVSGHPLDEYKKDLEKINFTLSSQID 1009

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                G+       + S  +K ++KG++ G V+  +     E   F
Sbjct: 1010 ELEDGSQALFVGKIESITEKTSKKGNKFGIVSILDFHGTIEFMLF 1054


>gi|261393166|emb|CAX50778.1| DNA polymerase III alpha subunit [Neisseria meningitidis 8013]
          Length = 1144

 Score = 1019 bits (2636), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1034 (38%), Positives = 581/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   D                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVRIGNPDAPDK----------PFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAVALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M   FSDLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PRDFTPSQFFIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDYLVKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++  D+L KLIP 
Sbjct: 410  FCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPL 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+ L  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       VD+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIVDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  TIPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    + +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMNNAD--QKAANTNQGGLFDMMEDAIEP-VRLIDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQVEIMV 1014


>gi|306821145|ref|ZP_07454761.1| DNA-directed DNA polymerase III alpha subunit [Eubacterium yurii
            subsp. margaretiae ATCC 43715]
 gi|304550838|gb|EFM38813.1| DNA-directed DNA polymerase III alpha subunit [Eubacterium yurii
            subsp. margaretiae ATCC 43715]
          Length = 1147

 Score = 1019 bits (2636), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1055 (34%), Positives = 598/1055 (56%), Gaps = 43/1055 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            + + +     F HL +H+ YSLL+G   ++ ++ K +     +IAITD   +F  ++F +
Sbjct: 1    MVESITSEKKFTHLHLHTQYSLLDGFTVIDKVMKKASDLGMDSIAITDHGVMFGVVDFYK 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A    I+PIIGC+L    + +    N  K        I+LL    EGY+ LI+LVS  +
Sbjct: 61   AAKKYNIKPIIGCELYTAARTHKDKENIDKKSG----HIILLAKDDEGYRNLIKLVSIGF 116

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-G 179
            + D      R+    L++  ++GL+ L+   +G + +       + A K  L+ ++++  
Sbjct: 117  V-DGFYYKPRVDYELLKKY-SKGLVCLSACLAGDVQQQILAGDYEKACKTALSLEEIYGK 174

Query: 180  DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               Y+ +Q H   ++ +    + +++    +PLV TN+  ++ ++D ++H+VL+ +    
Sbjct: 175  GNFYLEMQNHNIPEQKKVNIYLRKMSKDTGIPLVVTNDVHYVDKQDNKSHEVLLCIQTGK 234

Query: 239  VVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             ++ + +    T + Y K++ EM  +F    EAL NT +IA  C+      +  LP +  
Sbjct: 235  TLADEQKMEFLTNEFYFKSQDEMYELFEGDEEALYNTQKIAEMCNLEFDFDSYHLPNYEV 294

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E           L+     GL+               + RQRLDFEL VI +M +  YF
Sbjct: 295  PEN----YTAYEYLKKLCNDGLKK--------YDKVTDEIRQRLDFELEVINQMGYVAYF 342

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI +AKKNNI VGPGRGS AGS+ +Y L ITDIDPL+F+LLFERFLNP R+SMPD
Sbjct: 343  LIVHDFIDFAKKNNIAVGPGRGSAAGSIVSYLLNITDIDPLKFNLLFERFLNPQRVSMPD 402

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             DIDF  D+RD VI YV+ KYG + V+QIITFG+ +A+ A+RD  R + + Y   D++ K
Sbjct: 403  IDIDFASDKRDMVIEYVKEKYGKDHVSQIITFGTFKARLAIRDCARVMGISYFIADKVAK 462

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP      +   A+  +   ++    D +V +L+++++ +EG+ RHASTHAAG+VI   
Sbjct: 463  MIPLMLGVTIE-SALNINHELKKLYDEDDTVKKLIDMAKTIEGMPRHASTHAAGVVISKN 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596
             +   VP+Y  V+ D  V QF M  +E+ GL+K DFLGL TLT++Q+++D + + R + +
Sbjct: 522  SVDSYVPLY--VQDDNIVAQFTMTTLEELGLLKMDFLGLGTLTIIQRTIDNIKKNRNISL 579

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             L  I +DD + Y  + T  TLG+FQ+ESSGMR+ ++ ++P+ +ED+ A +SLYRPGP+D
Sbjct: 580  KLDEIDYDDKKVYEHIATGKTLGMFQIESSGMRKFMKELKPENLEDLTAGISLYRPGPMD 639

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +I  Y   K  ++ I  IH  + P+L  T+G++IYQEQVMQI + L+GYS   AD++RRA
Sbjct: 640  SIGDYIKNKEDEKNIKYIHEKLIPILSVTKGIMIYQEQVMQIVRDLAGYSYGSADLVRRA 699

Query: 717  MGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            M KK  + M++++++F+         G  KNGI +  A  IF+ +  FA+YGFNKSHAAA
Sbjct: 700  MSKKKMDVMEQERQKFVYGMESENIAGCVKNGIDEKTANKIFDYMIDFANYGFNKSHAAA 759

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+VISYQTA++KT+YPVEF+A+ M++ + N +K+ ++  D ++  I+++ P VN    DF
Sbjct: 760  YSVISYQTAYLKTYYPVEFMASLMSMAIGNTDKVMEYKMDCQEMGIEVLAPDVNHSFSDF 819

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             + D++I + L+A+KGVG   A +I E    +  + S ED   R+DS+ +N++V E+L+ 
Sbjct: 820  SIEDDKIRFPLSALKGVGFAVASNIAEERGRNGRYISFEDLVERLDSRDINKKVAEALIK 879

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            +G+LD    +R   + + + I +     +KN      + F                   +
Sbjct: 880  SGSLDSIIVNRASAMSNYERIIEGIHSTKKNMVQGQISFFNASISQGYKVGIAPDIKEFS 939

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY---------EESVATIRGNNIRLA 998
              +    E+ +LGFY SG+PL+ Y+ ++++                 S   I    +++ 
Sbjct: 940  HEILLNMEKEILGFYISGNPLEKYQDLIKQRTNMTTTAIKEINEENTSQKVIETTKVKII 999

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             M+   +   T+K + + ++T  +     E   FP
Sbjct: 1000 GMISKMKISTTKKNAMMAFITIEDLYSSVEVIVFP 1034


>gi|71276388|ref|ZP_00652665.1| DNA polymerase III alpha subunit [Xylella fastidiosa Dixon]
 gi|71162850|gb|EAO12575.1| DNA polymerase III alpha subunit [Xylella fastidiosa Dixon]
          Length = 1193

 Score = 1019 bits (2635), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1078 (38%), Positives = 624/1078 (57%), Gaps = 74/1078 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             + SFVHL +H+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  L I              P  T   + LL     GY  L
Sbjct: 62   FALIKFYKAAETVGIKPISGADLLIA------------EPEHTPWGMTLLCRDHTGYLNL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
             +L+SR +L     +  V +   W+++   + L  L G     + + F    + +AE++L
Sbjct: 110  SQLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIG-RHSLVGQLFAKGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R         +Q  +Q+A    +P++A+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + +A   ++    RPR  +   YL++  EM ++F+D+P+AL+NT  +A+RC+  +++  
Sbjct: 228  RVCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +     + +    ++ +R ++  GLE RL +  +A G   +DY  RL+FEL+ I 
Sbjct: 288  YFLPNYPVPNDETL----DSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M FSGYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC +RRDEVI YV  KYG ERV+QIIT+G++ AKA +RDVGR L  PY
Sbjct: 404  PERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADD------SRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIP+     +       +      +   +   A+  V  LL ++++LE L R
Sbjct: 464  GLVDSVAKLIPSTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PL++  P++ +   +     PVTQF+   +E+ GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRGV-----KVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  + +R        VD++ +P DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINKRHARACIDPVDITALPLDDLPTYKDIFASGNTSAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +  RK+G ++ +   P    +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+    A  IF+L+
Sbjct: 704  QVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  +AR  N
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLN 823

Query: 814  IQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
            ++++ P++N     F+        Y L AIKGVG +    I++      P+ SL DFC+R
Sbjct: 824  LKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930
            V S KLNRR LE+++ AGALD  G +R  ++  L  + K  + + + R +   ++F + +
Sbjct: 884  VTSAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNAD 943

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE----- 985
             GT + ++ L +      +     E+  LG YFSGHP D Y+  ++++            
Sbjct: 944  PGTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALER 1003

Query: 986  -SVATIRGN----------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +  RGN          N  LA +VVS ++    KG    +V   +     E + F
Sbjct: 1004 ILSSQQRGNGEKRTWQPEVNTILAGLVVSVRR----KGDSQVFVQLEDGRGRIECSAF 1057


>gi|332180545|gb|AEE16233.1| DNA polymerase III, alpha subunit [Treponema brennaborense DSM 12168]
          Length = 1179

 Score = 1019 bits (2634), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1037 (34%), Positives = 567/1037 (54%), Gaps = 25/1037 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS YSLL+GA  +  ++ +       A+A+TD  N+F AL F Q     GI+P
Sbjct: 28   DFVHLHVHSDYSLLDGAAKVKTLVARAKELGMSALALTDHGNMFGALRFEQLCHKEGIKP 87

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+  +      +  ++G         ++L+    EGY+ L+ L SR Y         
Sbjct: 88   LVGCEFYVAGSSRHE--HKGTEQGNKYYHLILIAKNVEGYRNLMMLTSRSYTEGM-YYKP 144

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI    ++E  + GL+ L+   +G + +    N ++ AE  +  ++ +F  +  ++ LQ 
Sbjct: 145  RIDEELIREY-SGGLVCLSACLAGQLPQLLLNNQNKEAEDLVRRYRDIFGAENYFIELQD 203

Query: 189  HRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +   + +++ +A    +P+V TN+  +  +EDY A DVL+ +          R +
Sbjct: 204  HGIAQQKEVAPKLIDIARKLGVPMVVTNDIHYCLKEDYIAQDVLVCIGTKKTRDDPRRMK 263

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--APILPRFIEKECDDIQ 304
                + Y+K   EM  +F   PE +ENT  +A  C   +       +       +     
Sbjct: 264  FEGTEFYMKTGEEMAQLFPAYPEMIENTKRVADMCDLTIPQFSTKELKDCLPVYQIPPEF 323

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K +++ +R+    GLE R  +         ++ RQR ++EL +I +M FSGYFLIV DFI
Sbjct: 324  KTQDDYVRHLVYKGLEKRYPE-------ITEEIRQRAEYELGIIFQMGFSGYFLIVWDFI 376

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAK+N+IPVGPGRGSGAGS+ AYA+TITDIDP RF+L+FERFLNP+R+SMPDFD+D C 
Sbjct: 377  NWAKQNDIPVGPGRGSGAGSLVAYAMTITDIDPFRFNLIFERFLNPERISMPDFDVDICY 436

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + R +VI Y + KYG  +V  I+TFG+L+AKA ++DV R L +P S+V+ L KL+P+ P 
Sbjct: 437  EGRQDVIEYTRRKYGDPQVGHIVTFGTLKAKAVIKDVARVLDIPLSEVNILTKLVPDGPK 496

Query: 485  HPVSLQAIADDSRFREA-----RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              +   A   + +   +        DP    L ++  KLE   R+ S HA+GIVIG   L
Sbjct: 497  VHLK-DAFEVNEKIPGSGQLAPYRNDPRYKELFDLCFKLEDNNRNTSLHASGIVIGKSKL 555

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL- 598
             +  P+Y+D ++     Q+ M  IE  GL+K D+LGLKTLTL++ +   + +R       
Sbjct: 556  PEWAPVYKDSKTGKVAVQYTMDIIEPCGLVKMDYLGLKTLTLIKYAERIIRKRPGYEQFR 615

Query: 599  -SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +   D +T+ L     T  +FQ ES GM++ L+  QP  +EDI+AL +LYRPGP+D 
Sbjct: 616  ADEVSETDEKTFDLFCAGQTSAVFQFESPGMQKILKQAQPRRLEDIVALNALYRPGPMDY 675

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y   K    KI    P +  +L+ET GV++YQEQVMQ+AQ ++GYSL  AD+LRRAM
Sbjct: 676  IPQYIEGKFDSSKITYPDPCLKSILEETYGVMVYQEQVMQVAQRIAGYSLGGADMLRRAM 735

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  E M  +K +FI GA KNG +   A +IFE++  FA YGFNKSHAAAY+V++Y+TA
Sbjct: 736  GKKKVEVMAAEKTKFIEGAVKNGFTAEHAADIFEIMIPFAGYGFNKSHAAAYSVVAYRTA 795

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K ++P EF+AA++T E+ + +K+ ++  + R   ++I PP +N     F V D RI +
Sbjct: 796  YLKANFPAEFIAANLTNEITSTDKLPEYITEGRSMGLEIDPPDINRSDKVFDVVDGRIVF 855

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L  IKG+G   A  I+    A+ P+    +F  RV++  +N++ +E L+  GA D    
Sbjct: 856  GLLGIKGLGEAAADAIIAERKANGPYTDFMNFLDRVNTHDVNKKAIEVLIKTGAFDKLDK 915

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  L  +++    YA+  +        ++F             E+            E+
Sbjct: 916  NRATLTANMERAIDYAESKKSAGRFGQVSLFEDSGVQEFADFKYEEQPEIPVMEMLNMEK 975

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             ++G Y SGHPLD Y+  ++               G   ++  ++ + +   T+KG+++ 
Sbjct: 976  ELIGCYVSGHPLDKYRETIKNAATVTSATMGRAQEGKQYQIIGLLKNIRTITTKKGAQMA 1035

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +    +    ++  FFP
Sbjct: 1036 FAQLEDLNGSFDLTFFP 1052


>gi|296116516|ref|ZP_06835126.1| DNA polymerase III subunit alpha [Gluconacetobacter hansenii ATCC
            23769]
 gi|295976728|gb|EFG83496.1| DNA polymerase III subunit alpha [Gluconacetobacter hansenii ATCC
            23769]
          Length = 1142

 Score = 1018 bits (2633), Expect = 0.0,   Method: Composition-based stats.
 Identities = 472/1033 (45%), Positives = 658/1033 (63%), Gaps = 25/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F+HL+VHS+YSL +GA+ +  I+      + P +AITDT N+F ALEFSQ     GIQP
Sbjct: 5    NFIHLRVHSAYSLSQGAIRVPEIISLAHEMRMPGVAITDTGNMFGALEFSQYCSKKGIQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGCQ        + +  +   P      +VLL     G   L  L S  +L        
Sbjct: 65   IIGCQ--------IALPARCDKPGSPAEPMVLLARNETGLMNLQYLSSAGFL-QHETDEP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + L  L +    GL ++TGG+ GP+ R         A + L      FG  + V L RH
Sbjct: 116  TVPLDILCDRAD-GLFLMTGGTRGPLFRMLAEGLEADAARLLARLHAAFGRYMAVELHRH 174

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +R  E  ++ LA    +PLVATN   F   + YEAHD L+ +A    ++++DR RV
Sbjct: 175  GLSVERAVEPGMIALADRAGIPLVATNECFFPRPDMYEAHDALLCIAQGRTMAEQDRWRV 234

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            TP+H+ K    M  +F+DLPEA +NT+EIAR C+  ++   P+LP   +         E+
Sbjct: 235  TPEHWFKPPHMMRELFADLPEACDNTLEIARLCAIKVETRKPLLPVCPKVA---PGATED 291

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR+ A  GLE RLA+  I +    Q Y +RL FEL++IARM F GYF+IVADFIQWAK
Sbjct: 292  ETLRSMARDGLERRLARMDIDEQ-TRQTYEERLAFELDIIARMGFPGYFMIVADFIQWAK 350

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             ++IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQDRRD
Sbjct: 351  AHDIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQDRRD 410

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVIRYV+ +YG +RVAQIITFG LQA+AA+RDVGR L + +  V+++ +LIPN+PA PV+
Sbjct: 411  EVIRYVRQEYGPDRVAQIITFGKLQARAAVRDVGRVLGLSFGMVNKVAELIPNNPAKPVT 470

Query: 489  LQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L+ AI  + R +E R  D ++ RL+EI+ +LEGL+RHASTHAAG+VIGDR L +LVP+YR
Sbjct: 471  LKQAIDGEPRLQEMRDNDETLRRLMEIALQLEGLFRHASTHAAGVVIGDRELVELVPLYR 530

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+LQ++  FL + GV VDL+ +P DD  
Sbjct: 531  DPKSDMLVTQYNMKFVEQAGLVKFDFLGLTTLTILQRAAQFLERLGVTVDLAALPLDDAL 590

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L    T G+FQ E +GMR  L+ M+P  +ED+IA V+LYRPGP+ NI  Y  RK+G
Sbjct: 591  TYDMLARGDTGGVFQFEGAGMRDVLKQMRPTRLEDLIAAVALYRPGPMANIPDYCRRKHG 650

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E     H  I  +L ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+ EMD+
Sbjct: 651  -EAWEPPHEEIRDILSETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIRAEMDQ 709

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+  F  GA+K GI    AV +F+L+AKFADYGFNKSHAAAYA++SYQTAWMK ++PV F
Sbjct: 710  QRVIFTEGATKRGIEHDKAVEVFDLMAKFADYGFNKSHAAAYALVSYQTAWMKANHPVAF 769

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAI 842
            LAA M+L  +  EK+    Q+A +  I+++PP +N    DF V     G+  I Y+LAA+
Sbjct: 770  LAACMSLAREKTEKLAALRQEAERLGIKVLPPDINASDADFTVEKLPDGEYGIRYALAAV 829

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            K VG +  + ++    ++PF  + D  +R+D + +N+  LE+L  AGA D    +R Q  
Sbjct: 830  KKVGLSAMQALVAVRGERPFADMTDIAARIDPRNVNKMQLENLARAGAFDTILPNRAQAC 889

Query: 903  QSLDNIQKYAQWVEKNRTN-KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             +++ + + AQ   +   + +        + T  + + L          R   E   +GF
Sbjct: 890  AAVETVLRRAQSHAQEAASGQIGLFGGGGEATAQETLRLPSVPDWPEFDRLNMEADAIGF 949

Query: 962  YFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            + + HPLD Y P++R++G+      E+ A      +++A  VV ++++ TR G+++ WV 
Sbjct: 950  HLTAHPLDSYGPLMRRLGVVKSTGLETAAAAGITRVKIAGCVVDRKERPTRTGNKMAWVR 1009

Query: 1020 FSEPAKEYEANFF 1032
             S+ +   E  FF
Sbjct: 1010 LSDASGGCEVTFF 1022


>gi|260906536|ref|ZP_05914858.1| DNA polymerase III subunit alpha [Brevibacterium linens BL2]
          Length = 1185

 Score = 1018 bits (2633), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1069 (35%), Positives = 564/1069 (52%), Gaps = 57/1069 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YS+L+GA  L +++    A    AIA TD   LF A +F  +A AAGI+P
Sbjct: 5    DFVHLHVHTEYSMLDGAARLTDLMAATKASGMSAIATTDHGYLFGAFDFWSQATAAGIKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGK------------TPFPTVPSIVLLVSTAEGYQRLIELVS 117
            IIG +  +    + +   + K            +       + LL     G + L +  S
Sbjct: 65   IIGVEAYVTPGTDRRDKTRVKWRTDESQKRDDLSGGGAYTHMTLLSRNNTGMRNLFKASS 124

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               L     +  RI    L E  +EGLI  TG  SG I         + A      ++++
Sbjct: 125  YASLDSVFSKWPRIDQDLL-ETYSEGLIATTGCPSGEIQVRLRLGQYEEARAAAGKYREM 183

Query: 178  F-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  D  YV L  H    ++     +++L+   ++PLVATN+  +  E D +AH+ L+A+ 
Sbjct: 184  FGKDNYYVELMDHGLSIEKRVTKDLIRLSKEMDIPLVATNDLHYTHESDAKAHEALLAIQ 243

Query: 236  HSTVVSQKDRP-------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + + +                +YLK+ +EM ++FS+ PEA +NT+EIA +C       
Sbjct: 244  SGSKLIEPTYDQGGSRFAFSGSGYYLKSGAEMRALFSEFPEACDNTLEIAEKCEVSFDTS 303

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
            A  +P+F     +D    E + L  +   GLE R   G         D R++ D+EL+VI
Sbjct: 304  ANYMPKFPCPPGED----ETSWLVKEVQTGLEYRYPGGI------PDDVRKQADYELDVI 353

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
              M F GYFL+VADFI W+K N I VGPGRGSGAGS+ AYA+ ITD+DPL+  L FERFL
Sbjct: 354  ISMGFPGYFLVVADFINWSKDNGIRVGPGRGSGAGSMVAYAMRITDLDPLKHGLFFERFL 413

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NPDR+SMPDFD+DF   RR EVI YV  KYG ERVA I+T+G+++ K AL+D  R L  P
Sbjct: 414  NPDRVSMPDFDVDFDDRRRGEVIDYVTRKYGDERVAMIVTYGTIKTKMALKDSARVLGKP 473

Query: 469  YSQVDRLCKLIPN-DPAHPVSLQAIA--------DDSRFREARLADPSVDRLLEISQKLE 519
            +S  +RL K +P  + A  + L  I         +   FRE   +DP      E ++ +E
Sbjct: 474  FSMGERLTKALPPAEMAKDIPLADIENAESKRYNEAGEFREFVDSDPDARETFETAKGIE 533

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++   P+  ++P+ R  +    +TQF+    E  GLIK DFLGL+ L
Sbjct: 534  GLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFLGLRNL 593

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +++ +   R   + L  +  DD   Y LL+   TLG+FQL+  G+R  L  M+PD
Sbjct: 594  TIISDAVENIKANRDYDLGLEHLDLDDRGAYDLLSRGDTLGVFQLDGGGLRALLRLMKPD 653

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQ 692
              EDI A ++LYRPGP+  D+   +  RKNG +++  IHP ++     +L  T G+IIYQ
Sbjct: 654  NFEDISATIALYRPGPMGADSHTNFALRKNGLQEVTPIHPELEEPLEDILGTTYGLIIYQ 713

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM IAQ ++GYSL +AD+LRRAMGKK K E+DKQ+  F  G  + G S+  A  ++++
Sbjct: 714  EQVMAIAQKVAGYSLGQADILRRAMGKKKKSELDKQQVGFFGGMKERGYSEAAAQALWDI 773

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  F+DY FNK+H+AAY ++SY TA++K HY  E++AA +T   DN +K+  +  + R+ 
Sbjct: 774  LLPFSDYAFNKAHSAAYGLVSYWTAFLKAHYTAEYMAALLTSVGDNKDKLAIYLNECRRL 833

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871
             I ++PP VN   + F      I + + A++ VG      I+EA      + S  DF  +
Sbjct: 834  GITVLPPDVNDSALHFTPVGEDIRFGMGAVRNVGANVVDGIVEARGEKGAYTSFTDFLDK 893

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V S   N+R +ESL+ AG  D  G +R  L++  +        V++   N   ++FA   
Sbjct: 894  VPSHVCNKRTIESLIKAGGFDSLGQTRRSLVEVHEEAVDSVIGVKRQEANGQFDLFAGLG 953

Query: 932  GTFSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
            G   +    + +          +   E+ ++G Y S HPL+  + +L         E V 
Sbjct: 954  GDDDEPSFSVAIPDRPEWEKKEKLAFERDMIGLYVSDHPLNGLEGVLAAESEASIAEVVD 1013

Query: 989  ----TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                   G+ +++  M+    +K ++  G     VT  +   E E  FF
Sbjct: 1014 PESHRHDGSQVKICGMITQVSRKVSKNSGKPYAIVTVEDLNAEVEVMFF 1062


>gi|94676467|ref|YP_588968.1| DNA polymerase III, alpha subunit [Baumannia cicadellinicola str. Hc
            (Homalodisca coagulata)]
 gi|94219617|gb|ABF13776.1| DNA polymerase III, alpha subunit [Baumannia cicadellinicola str. Hc
            (Homalodisca coagulata)]
          Length = 1163

 Score = 1018 bits (2633), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/1045 (38%), Positives = 604/1045 (57%), Gaps = 39/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PSF+HL++HS YS+++G + +++++ K  +   PA+A+TD  NL+  ++F + A + GI+
Sbjct: 4    PSFIHLRIHSDYSIIDGLIKVSSLVKKAVSLNMPALALTDVTNLYGIIKFYKAANSVGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +                  +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIIGADFLMYNP----------ILGGELTELTILATNYIGYQCLTMLISQAYRRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   +GLI+L+G   G + +    +  Q  +K L  + + F DR Y+ L R
Sbjct: 114  PVIDRDWLIQ-HNQGLIILSGARKGDVGKLLLNDKMQQVKKCLAFYHRYFPDRYYLELIR 172

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRP 246
                 +    +  V LA  + LP+VATN+  F+S +D++AH++ +A+ +  ++   K   
Sbjct: 173  TGRLNEEKYLNLAVLLAKKNGLPVVATNDVRFISSDDFQAHNIRVAIHNGCLLDNVKQSY 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   Y+++  EM  +F D+PEAL N+VEIA RC+  +++    LP+F           
Sbjct: 233  DYSSQQYIRSEQEMCELFKDIPEALANSVEIAIRCNVTIRLGEYFLPQFYTGNI-----S 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              + L   A  GLE RLA      I    +   Y QRLD EL VI  M F GYFLIV +F
Sbjct: 288  TNSYLIKCARQGLEERLAFLFPDLIQLKDNRLPYDQRLDQELQVINGMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N+IPVGPGRGSGAGS+ AYAL ITDI+PL F LLFERFLNP+R+SMPDFDIDFC
Sbjct: 348  IQWSKDNSIPVGPGRGSGAGSLVAYALKITDINPLPFDLLFERFLNPERISMPDFDIDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PYS V+++ KL+P+DP
Sbjct: 408  MEKRDLVINHVAETYGRDAVSQIITFGTMAAKAVIRDVGRVLGYPYSFVNKISKLVPHDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A+A   + R+    D +V  L+++++KLEG+ R+   HA G+VI    ++   
Sbjct: 468  GITLD-KALAIAPQLRQIYNVDENVTLLIDLARKLEGVTRNVGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV----KVDLS 599
            P+Y D     P+TQF+   IE AGL+KFDFLGL+TLT++ ++L+ + +        ++++
Sbjct: 527  PLYYDSEGKCPLTQFDKNDIEYAGLVKFDFLGLRTLTIINRALEMINKHIHSKLNPIEIT 586

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +++ +L    T  IFQLES G+++ +  +QPDC EDIIAL++L+RPGP+ + +
Sbjct: 587  TIPLDDKKSFDMLLCADTTAIFQLESRGIKELIRRLQPDCFEDIIALIALFRPGPLQSGM 646

Query: 660  --VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
               + NRK+G+E I        HP + P+L+ T G+I+YQEQVMQIA++L+GY+L EAD+
Sbjct: 647  VDNFINRKHGRETICYPDIQWQHPSLQPILEPTYGIILYQEQVMQIARILAGYTLGEADL 706

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  +EM KQ+  F  GA K GI   +A+ IF+L+ KFA YGFNKSH+ AYA++
Sbjct: 707  LRRAMGKKEPKEMVKQRAIFKIGAEKMGIESKLAMKIFDLVEKFAGYGFNKSHSTAYALV 766

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQT W+K HYP +F+A++MT ++DN++K+     +  +  I ++PP++N     F V  
Sbjct: 767  SYQTLWLKAHYPSQFMASAMTADIDNIDKLAILVYECLRMGITVLPPNINISHYYFHVNK 826

Query: 833  N-RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            N +I Y L AIKG+G      I+EA      F +L D C R  +KKLNRR+LE L+ +GA
Sbjct: 827  NSQIIYGLGAIKGLGEGPITTILEARNTGGKFSNLLDLCIRTCTKKLNRRILEKLIISGA 886

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT---FSDKITLEKFSVEN 947
             D  G  R  L+  L+   K A    K       ++F+ +             +     +
Sbjct: 887  CDQLGSHRAALMNELETALKTADQYTKLNMIGQIDMFSTQADKQCILDYSHKSKNIQPWS 946

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMG-IKGYEESVATIRGNNIRLAAMVVSKQQ 1006
              V  + EQ  LG Y + HP+  Y   ++        ++         I +  +++S + 
Sbjct: 947  KQVILKGEQETLGLYLTSHPIIEYLYEIKFYTKGLRLKDIPLITCSKKITVVGLLLSIRN 1006

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANF 1031
              T     +   T  +     +   
Sbjct: 1007 IITNNNQSLSICTIDDMTGHLDIAI 1031


>gi|33240201|ref|NP_875143.1| DNA polymerase III subunit alpha [Prochlorococcus marinus subsp.
            marinus str. CCMP1375]
 gi|33237728|gb|AAP99795.1| DNA polymerase III alpha subunit [Prochlorococcus marinus subsp.
            marinus str. CCMP1375]
          Length = 1168

 Score = 1018 bits (2632), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1050 (36%), Positives = 595/1050 (56%), Gaps = 38/1050 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +     GI+P
Sbjct: 2    GFVPLHNHSDYSLLDGASQLPLMVARAKELGFPALALTDHGVMYGAIELLKLCKKEGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          + +  +     +V+L   + GY+ L++L +  +L     +  
Sbjct: 62   IIGNEMYVINGSISDPQPKKEKRY----HLVILAKNSTGYKNLVKLTTISHLKGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L++  +EGLI+ T    G I +A       VA++    +K +FG+  Y+ 
Sbjct: 118  FSRACIDKDLLKKY-SEGLIISTACLGGEIPQAILRGRLDVAKEVANWYKNVFGEDFYLE 176

Query: 186  LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR     + ++A    + LVATN++ +L+E D EAHD L+ V    +V  + 
Sbjct: 177  IQDHGSIEDRIVNVAISKIANELNIELVATNDAHYLTENDVEAHDALLCVLTGKLVKDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   YLK+ S+M ++F D        +A++NT+ +A +      +    +P+F   
Sbjct: 237  RLRYTGTEYLKSESQMKNLFVDHLDEEVVTKAIKNTLMVASKVEEYSILGNYKMPKFPVP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E +         L + +V GL  +L   +I       +Y +RL  E+ +I  M F  YFL
Sbjct: 297  EGN----TPIEYLESVSVNGLLEKLKLDSID--LIDNEYSERLSTEIKIIEEMGFPTYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A++ +IPVGPGRGS AGS+ AY+L IT+IDP++  LLFERFLNP+R SMPD 
Sbjct: 351  VVWDYIKFAREQSIPVGPGRGSAAGSLVAYSLGITNIDPVKNGLLFERFLNPERKSMPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC +RR+EVI YV   YG ++VAQIITF  + +KA L+DV R L +PY + D+L KL
Sbjct: 411  DTDFCIERRNEVIDYVTRMYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYREADQLAKL 470

Query: 479  IPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L A+    +  S FR+    DP V + ++++ ++EG  +    HAAG+VI
Sbjct: 471  IPVVRGKPAKLDAMISKNSPSSEFRDKYEKDPLVKKWIDMAIRIEGTNKTFGVHAAGVVI 530

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               PL +LVP+ ++      +TQ+ M+ IE  GL+K DFLGLK LT+L+++++ + +   
Sbjct: 531  ASDPLDELVPLQKN-NDGQVITQYFMEDIESLGLLKMDFLGLKNLTMLERTVNLVEKSIG 589

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +VDL  +  +D +TY LL+     GIFQLESSGMRQ +  +QP  +EDI ++++LYRPG
Sbjct: 590  ERVDLDELSLEDKKTYELLSRGDLEGIFQLESSGMRQIVRDLQPSSLEDISSILALYRPG 649

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRK+G+E I   H  + P+L ET G++IYQEQ+M+IAQ L+GYSL +AD
Sbjct: 650  PLDAGLIPKFINRKHGREAIDFPHASLAPILGETYGIMIYQEQIMKIAQDLAGYSLGQAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM K +  FI GA K G+   IA  +F+ +  FA+Y FNKSH+ AY  
Sbjct: 710  LLRRAMGKKKVSEMQKHRGFFIDGAKKKGVDSKIASELFDQMVLFAEYCFNKSHSTAYGA 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K HYPV ++AA +T+   + +KI+++  +     I++MPP +N+  +DF   
Sbjct: 770  VTYQTAYLKAHYPVAYMAALLTVNSSSTDKIQRYISNCNSMGIEVMPPDINSSGIDFTPL 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            +NRI + L+A++ +G    R +++A   D  F SL D C R+ S  LNRR LESL+  GA
Sbjct: 830  ENRILFGLSAVRNLGDGVIRQLIKARVNDGLFLSLADLCDRIPSNILNRRSLESLIHCGA 889

Query: 891  LDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEKGTFSDKITLEKF 943
            LD F    +R QL++ LD I  +A    ++R +   N+F       EK   S        
Sbjct: 890  LDAFHPESNRAQLVKDLDLIIDWAGARARDRASGQGNLFDLSSEKEEKSDISSAPQGPIV 949

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
               + + + + E+ +LGFY S HPL       + +              + + + AM+  
Sbjct: 950  KDYHPTEKLKLEKELLGFYLSDHPLKQLSEPAKLIAPISLINLDDQRDKSKVSVIAMIKE 1009

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +   TRKG ++  +   +     EA  FP
Sbjct: 1010 MRIVNTRKGDKMSILQIEDLTGSCEAVVFP 1039


>gi|242310657|ref|ZP_04809812.1| DNA polymerase III alpha subunit [Helicobacter pullorum MIT 98-5489]
 gi|239523055|gb|EEQ62921.1| DNA polymerase III alpha subunit [Helicobacter pullorum MIT 98-5489]
          Length = 1172

 Score = 1018 bits (2632), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1062 (35%), Positives = 605/1062 (56%), Gaps = 47/1062 (4%)

Query: 5    LEKSPS---------FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
            + K+P          F HL +H+ YSLL+G   +  +  +I      ++AITD  N+F A
Sbjct: 1    MSKTPDEVISQDKIPFTHLHLHTEYSLLDGLNKIKILAKRIKELGMDSVAITDHGNMFGA 60

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +EF +     GI+PI+G +  +   + +   +  +        + L     +GY+ L+ L
Sbjct: 61   IEFYKAMKEQGIKPILGMEAYLHNAEEISDKSNQR------FHLCLYAKNLQGYKNLMYL 114

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA--------FFFNSSQVA 167
             S+  L        RI    L+E  +EGLI  +   +G +                 + A
Sbjct: 115  SSQACLYG-YYMKPRISKKMLRE-HSEGLICSSACLNGEVQWHLNLKKEDNKGRKGYERA 172

Query: 168  EKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            ++  L +K++FGD  Y+ L RH   ++   + Q++Q++    + ++ATN++ + ++ D  
Sbjct: 173  KEVALEYKEIFGDDFYLELMRHGIEEQQLIDKQIIQISLETGIKIIATNDTHYTNQGDST 232

Query: 227  AHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            A +V   +      +  +R R T  + Y+K+  +M  ++ DLPEA+ NT EIA +C+  L
Sbjct: 233  AQEVAFCIGFGKDFNDPNRMRHTVQEFYIKSPEQMAKLYMDLPEAIANTKEIADKCNLEL 292

Query: 286  QVHAPILP------RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
             +  P  P       + + E  D  ++ E     K   GL+ RL     ++    Q+Y++
Sbjct: 293  HLGDPTPPSFKFTAEYAKAENLDFTQDSE-YFAYKCREGLKKRLENVESSRH---QEYKE 348

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL+ E+ +I +MKF GY LIV DF++ AK+  IPVGPGRGS AGS+ A+ L IT+IDP++
Sbjct: 349  RLEKEIEIINKMKFPGYMLIVWDFVRAAKERGIPVGPGRGSAAGSLVAFCLEITNIDPMK 408

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            + LLFERFLNP+R+SMPD D+DFCQ RR+E++ YV +KYG   VAQ+ITFG ++AKA +R
Sbjct: 409  YDLLFERFLNPERVSMPDIDMDFCQSRREEILEYVTDKYGRHNVAQVITFGMMKAKAVIR 468

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            DV R + MPY + D   KLIP +    +  +A   + + +E    DP   ++ + +  LE
Sbjct: 469  DVARVMGMPYGEADAFAKLIPKELDITLE-KAFEKEPKIKELIDKDPLAKKIWDFAVVLE 527

Query: 520  GLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
               R+  THAA +VI  +  L    P+YR  R  +  TQ++MK++E   LIKFDFLGLKT
Sbjct: 528  NTKRNPGTHAAAVVIDSEHELWHKAPLYRSTRDGIIATQYSMKYLEDVDLIKFDFLGLKT 587

Query: 579  LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LTL+  +L  +  R  +++D   +  +D + Y  L +  TLGIFQ+ESS  +   + ++P
Sbjct: 588  LTLVDDALKLIKNRHNLEIDFLKLDVNDKKVYETLQSGNTLGIFQIESSMFQGINKRLRP 647

Query: 638  DCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
               EDIIA+++L RPGP+++ +V  + +RK+GK  IV + P ++ +L+ T G I+YQEQV
Sbjct: 648  STFEDIIAIIALGRPGPMESGMVSDFIDRKHGKAPIVYMFPELESILRPTYGTIVYQEQV 707

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQI Q + G+SL EAD++RRAMGKK  + M   K +F  GA K G ++  A  ++EL+ K
Sbjct: 708  MQIVQKIGGFSLGEADLIRRAMGKKDAQIMADNKNKFAQGAEKQGFNRAKAEELWELIVK 767

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA YGFNKSH+AAYA+I+++TA++KT+YP EF+AA +T E ++ +KI ++ ++A + +I+
Sbjct: 768  FAGYGFNKSHSAAYAMITFETAYLKTYYPKEFMAALLTSEKNSTDKIVEYIEEANKMDIK 827

Query: 816  IMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCS 870
            ++PP++    ++F V     ++ I + L AIKG G      I+E    +  F  LEDF S
Sbjct: 828  VLPPNIQKSELEFSVARIDDEDCILFGLGAIKGAGEVAINIILEERKNNGDFKDLEDFLS 887

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            R+D +K+N++ LE+ + +GA+DCFGY+R  LL+ ++ + + A+  +  +     ++F   
Sbjct: 888  RIDPQKVNKKSLEAFIKSGAMDCFGYTRRTLLEQVELLTENAKTAQIAKKEAENSLFGDS 947

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
            +   +  + LE     +     E E+  LGFY SGHPL+ YK I++ +      +     
Sbjct: 948  EEFTAIALELENKEEYSKKEILEFEKESLGFYASGHPLEDYKEIIKSINCAYTNQIQDIA 1007

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++I L   +     K ++ G R G +   +     E   F
Sbjct: 1008 ENSSILLVGSIEDVITKFSKSGKRYGILKLQDFYGSVELTIF 1049


>gi|237745551|ref|ZP_04576031.1| DNA polymerase III [Oxalobacter formigenes HOxBLS]
 gi|229376902|gb|EEO26993.1| DNA polymerase III [Oxalobacter formigenes HOxBLS]
          Length = 1153

 Score = 1017 bits (2631), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/1050 (38%), Positives = 604/1050 (57%), Gaps = 45/1050 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K+ SFVHL++HS YS+++G + +++++   A D QPA+A+TD +NLF  ++F + A   G
Sbjct: 2    KNTSFVHLRLHSEYSIVDGLVRIDDVVGAAAKDGQPALALTDLSNLFGLIKFYKAARKKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI GC + I                     ++LLV    GY  L EL+SR +L +Q +
Sbjct: 62   VKPIAGCDVWITN----------DVDREKPSRLLLLVKDRRGYLNLCELLSRAWLENQYR 111

Query: 127  QSVRICLSWLQEIGTE----GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                I + WL+E+       GLI L+G   G I  A      + A+K  L +  +F    
Sbjct: 112  GRAEIRIEWLEELARRDSETGLIALSGAKQGDIGMALDSTGFENAKKCALRWAGIFPGNF 171

Query: 183  YVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +QR           Q  +LA   +LP+VAT+   FLS + + AH+    ++   V+S
Sbjct: 172  YIEIQRTGQLGMEQYVRQAAELAEKLQLPVVATHPVQFLSPDQFRAHEARTCISEGEVLS 231

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K R R         +++EM  +F+DLP AL+N VEIARRC+ +L++    LP F   + 
Sbjct: 232  NKKRARLFNEHQCFLSQTEMAQLFADLPGALQNAVEIARRCNLVLELGHHKLPLFPTPDG 291

Query: 301  DDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
              + +  E+E R+    GLE RL         +      Y +RL++E+  I  M FSGYF
Sbjct: 292  MTLDEFLESEARH----GLEKRLEVLFPDEEERKARRPVYDERLNYEIQTIINMGFSGYF 347

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK N +PVGPGRGSGAGS+ AY+L IT++DP+ ++L+FERFLNP+R+SMPD
Sbjct: 348  LIVADFIRWAKNNGVPVGPGRGSGAGSLVAYSLLITNLDPIAYNLIFERFLNPERVSMPD 407

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ  RD VI+YV+ +YG + V+QI TFG++ AKAA+RDVGR L + Y+  D + K
Sbjct: 408  FDIDFCQHGRDRVIQYVKERYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFCDGISK 467

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   V++  A  ++    E   ++  V +LL +++++EG+ R+   HA G++I  
Sbjct: 468  LIPFKPGKQVTIADAKKEEPLLAEREQSEEEVKQLLGLAEQVEGITRNVGMHAGGVLIAP 527

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
              L+   P+Y        V+QF+ K +E+ GL+KFDFLGL TLT+L  ++ ++ Q    +
Sbjct: 528  GKLTDFCPLYTQDGESGVVSQFDKKDVEEIGLVKFDFLGLTTLTILDLAVKYIHQLDPAM 587

Query: 597  ---DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
               +L  IP +D ET+ LLT   T+ +FQLES GM+  L+  +PD  EDIIALV+LYRPG
Sbjct: 588  SGFELDTIPLNDKETFDLLTRAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPG 647

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  +  RK+G E           +L ET G++IYQEQVMQ+AQ++ GY+L  AD+L
Sbjct: 648  PMDLIPDFCRRKHG-EAFEYPDERAKDILSETYGIMIYQEQVMQMAQVIGGYTLGGADLL 706

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK   EM + ++ F  GA+KN + +  A  IF+L+ KFA YGFNKSHA AYA++S
Sbjct: 707  RRAMGKKDAAEMARHRQIFRDGAAKNNLPEAKADEIFDLMEKFAGYGFNKSHATAYALLS 766

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVDFKVGD 832
            YQTA++K H+   F+AA+M+L MD+ +K++   +DA     ++I+PP +N+    FK   
Sbjct: 767  YQTAYLKKHHAAAFMAANMSLAMDDTDKVRVLVEDAVDVCGLEILPPDINSSDFYFKPVG 826

Query: 833  N----------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                       +I Y L A+KG G +    I++A  ++PF  L DFC RVD +++NRR +
Sbjct: 827  EPPSVSKKPVTQIRYGLGAVKGSGESAIEAIVQARKERPFRDLFDFCVRVDKRQINRRTI 886

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            ESL+ AGA DCF   R  LL S+          +   +    ++F  E+ T  + +   +
Sbjct: 887  ESLIRAGAFDCFKEDRAVLLASVG--LAIEAAEQAEASANQVSLFG-EEDTVLNAVEYVR 943

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                    R   E+ VLGF  SGH    Y    R+       E  A+     +  A +V 
Sbjct: 944  VPHWTEKSRLTEEKGVLGFCLSGHLFHAYAGEARQFAKSRISELEASREPRWV--AGIVA 1001

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + + +++G  +  V+  + +   E   F
Sbjct: 1002 GTRAQMSQRGKMMV-VSLDDGSATIEVTVF 1030


>gi|298369652|ref|ZP_06980969.1| DNA polymerase III, alpha subunit [Neisseria sp. oral taxon 014 str.
            F0314]
 gi|298282209|gb|EFI23697.1| DNA polymerase III, alpha subunit [Neisseria sp. oral taxon 014 str.
            F0314]
          Length = 1144

 Score = 1017 bits (2630), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1034 (38%), Positives = 584/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            P+    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PVGAADVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARSAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDYLVKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P++  D+L KLIP 
Sbjct: 410  FCQSNRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPL 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+ L  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       VD+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIVDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQAAYKIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VQLIDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQIEIMV 1014


>gi|312144146|ref|YP_003995592.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904797|gb|ADQ15238.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
          Length = 1119

 Score = 1017 bits (2630), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1033 (35%), Positives = 606/1033 (58%), Gaps = 35/1033 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  H++YSLL+GA+ + +++ K      PA++ITD   L+  +EF Q+A    I+P
Sbjct: 3    NFVHLHNHTAYSLLDGAIRIKDLIRKSKEYSLPAVSITDHGVLYGMIEFYQQAKKENIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +      K++N+ +  +     +VLL    EGY  LI+LV++ +L        
Sbjct: 63   IIGCELYLAEN---KLSNRNRKNY----HLVLLAENNEGYHNLIQLVTKSWLEG-FYYKP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L +  ++GLI L+    G + +     +  +A+K +  ++ +F  D  ++ LQ 
Sbjct: 115  RVDKELLAK-HSDGLICLSACLQGEVPQLILNGNYDLAKKAVSDYQAIFGHDSFFLELQD 173

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    +Q +++L+    +PLV +N+S +L  ED E  D+L+A+   T +  ++R  
Sbjct: 174  HNLKEEKEAAQGLIKLSNEENIPLVVSNDSHYLEREDSELQDILLALQTGTTIDDENRMS 233

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +  ++Y K+ SEM  +F DL  A ENTV+IA R +  L  +   LP + + + +   K 
Sbjct: 234  FSGQEYYYKSPSEMKKLFPDLDSAYENTVKIADRVNLELDFNHFYLPDYPDLKDN---KN 290

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E  L       L+ R            +   +RL +EL +I  M ++ YFLIV DF+++
Sbjct: 291  PEELLEKLCKKALKERGM-------AEDEKAVERLQYELKIIFEMGYAAYFLIVYDFVKY 343

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ N+I VGPGRGS AGS+ AY L IT ++PL++ L+FERFLNP+R++MPD DIDF  + 
Sbjct: 344  AENNDIMVGPGRGSAAGSLVAYLLKITKVNPLKYGLIFERFLNPERVTMPDIDIDF-DEN 402

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD++I YV+++YG +RVAQI TFG++ A+AA+RDVGRAL +PY +VD+  KLI +     
Sbjct: 403  RDQIIEYVRDRYGRDRVAQIGTFGTMAARAAVRDVGRALGIPYGKVDKAAKLISSRSGIE 462

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             SL    ++ + R     D  + ++++ ++ +EG  RH STHAAG++IG  PL+++VP+ 
Sbjct: 463  ESLN---NNKKLRNLYKEDGQIKKMIDYAKGVEGFPRHISTHAAGVIIGAEPLAEIVPLQ 519

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            +  + +  +TQ  M  +E  GL+K DFLGL+ LT+++ +L+ +  R   K+D++ IPFDD
Sbjct: 520  K--QDENIITQLPMDDLEALGLLKMDFLGLRNLTVIKNTLELIESRKNEKIDINSIPFDD 577

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNN 663
               Y  L+T  T G+FQ+ES   +   + ++P+   D+IA+++L RPGP+ +  +  +  
Sbjct: 578  KNVYDFLSTGKTAGVFQMESYLFKSLNQRLKPERFNDLIAMLALGRPGPLGSNIVDDFIA 637

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             ++G+++   +HP +  +L+ET G+I+YQEQVM+IA  L GYS+ EAD+LRR MGKK  E
Sbjct: 638  IRHGEKEADYLHPKLKAILEETFGMILYQEQVMEIASSLGGYSMGEADLLRRGMGKKKLE 697

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  ++E+F+ GA  NGI+   A  IF+ +  FA YGFNKSH+ AYA ++YQTA++K +Y
Sbjct: 698  IVAAEREKFVQGAVNNGIAAETAEKIFDQMEYFAGYGFNKSHSTAYAFLAYQTAYLKYYY 757

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAI 842
            P EF+AA  +  M N +KI  + + AR+ +++I+ P +N    DFK  GDN+I Y L AI
Sbjct: 758  PAEFMAALFSSVMGNQDKIADYIKAAREIDLEILAPDINKSYHDFKAEGDNKIRYGLKAI 817

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            K VG+ T   +  A  +K F S+ DF  R+D   LN +  E+ + AGA D    SR  LL
Sbjct: 818  KNVGSNTIYALENARKEKEFKSVVDFLKRIDMSALNIQSFEAFIKAGAFDDIVESRAALL 877

Query: 903  QSLDNIQKYAQWVEKNRTNKHEN---IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
             + + + +    + + R     +   +F  E     + +  E      +    + E+  L
Sbjct: 878  INYEELYQKYNNLSRQRAQGQRSFAELFGEENKFIEEDLKYEDIKELETETILKQEKEYL 937

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G Y S HPLD Y+  + K+ I    +++    G  +  A  ++S ++  T++ +++ ++T
Sbjct: 938  GIYLSAHPLDNYQHKITKLNIANISQAIKASDGEKVFTAGNIISYKEHITKRNNKMAFLT 997

Query: 1020 FSEPAKEYEANFF 1032
             S+   + E   F
Sbjct: 998  ISDQNDKIEIIVF 1010


>gi|324998887|ref|ZP_08119999.1| DNA polymerase III subunit alpha [Pseudonocardia sp. P1]
          Length = 1185

 Score = 1017 bits (2630), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1068 (34%), Positives = 553/1068 (51%), Gaps = 57/1068 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ +S+L+GA  L+++  +   +   A+A+TD  N++ A EF +KA AAG++P
Sbjct: 8    SFVHLHTHTEFSMLDGAARLDDLFSEAVKNDMSAVAMTDHGNVYGAFEFWRKAKAAGVKP 67

Query: 70   IIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  +      +               K P      + LL    EG   L  L S  
Sbjct: 68   IIGMEGYLAPGSRHERKRVALGGSNPGAADKNPDLMYTHMTLLAENTEGMHNLFRLSSLA 127

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF- 178
             L        R+    L++ G  GLI  TG  SG + R    +  + A +    ++ +F 
Sbjct: 128  SLEG-YYYKPRMDRELLEQYG-TGLIGTTGCPSGEVARLLQQDDFEGACQAASDYRDIFG 185

Query: 179  GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  +  L  H    ++  +  +  L    +LP +ATN+  +   +D +AH+VL+ V   
Sbjct: 186  KDNFFCELMDHGIEIEKRVQEDLFALKKRLDLPGLATNDLHYTYPDDTKAHEVLLCVQTG 245

Query: 238  TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRF 295
              ++  +R +    D YLK+ +EM  ++  + PEA +NT+ +A RC         + P+ 
Sbjct: 246  KTLADPNRFKFDAQDFYLKSATEMRELWDPIHPEACDNTLWVAERCDIDFTTGQDLQPKA 305

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
               E +     EE+ L  +   GL  R   G        + YR + ++E+ VI +M + G
Sbjct: 306  PVPEGE----TEESWLIKEVERGLHDRFPNGI------TEQYRTQANYEVGVIIKMGYPG 355

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+ AD I+ AK   I  GPGRGS AGS+ AY L ITD+DP+R  L+FERFLNPDR+SM
Sbjct: 356  YFLVTADLIRHAKSVGIRCGPGRGSAAGSLVAYVLGITDLDPIRHKLIFERFLNPDRVSM 415

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA--LQMPYSQVD 473
            PD D+DF + RR E+IRYV  KYG +R+AQIIT+ +++AKAA++D  R    Q  YS  D
Sbjct: 416  PDIDMDFDERRRGEMIRYVTEKYGEDRIAQIITYSTIKAKAAIKDSARVLFGQPGYSVAD 475

Query: 474  RLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRH 524
            R+ K +P       + L  I D S          R    ADP V  +++ ++ LEGL R 
Sbjct: 476  RISKAMPPAVMGKDIPLSGIFDPSHKRYSEATEVRALYEADPQVKEIVDTARGLEGLKRQ 535

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HAAG+++   PL  ++P+ R       +TQF+M   E  GL+K DFLGL+ LT+L  
Sbjct: 536  WGVHAAGVIMSSTPLIDVIPIQRRESDGAVITQFDMGVCETIGLLKMDFLGLRNLTILDD 595

Query: 585  SLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +L+ +      +VDL  +  DD  TY LL+   TLG+FQL+   MR  L  M P   E I
Sbjct: 596  ALENITLNGKPEVDLDHVELDDGPTYELLSRGDTLGVFQLDGGPMRDLLRRMAPSEFEHI 655

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQEQVMQ 697
             A+ +LYRPGP+  +    Y +RKNG+++I  IHP +      +L ET G+I+YQEQVM 
Sbjct: 656  SAVGALYRPGPMGANAHNDYADRKNGRQEITPIHPELAEPLKDVLGETFGLIVYQEQVMS 715

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ+L+GYSL +AD+LRRAMGKK KE +DK+   F  G   NG S      ++++L  F+
Sbjct: 716  IAQVLAGYSLGQADLLRRAMGKKKKEILDKEYVGFAQGMKDNGYSADAVKTLWDILLPFS 775

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            DY FN++H+AAY V+SY TA++K +YP E++A  +T   D+ +K   +  + R+  + ++
Sbjct: 776  DYAFNRAHSAAYGVVSYWTAYLKANYPAEYMAGVLTSVRDDKDKAAVYLAECRRMGVTVL 835

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876
            PP VN    +F    N I + L  I+ VG      I+ A  +   F    DF  +VD+  
Sbjct: 836  PPDVNDSVRNFAPVGNDIRFGLGGIRNVGHNVVDAIVAARREKGNFVDFSDFLRKVDAVV 895

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             N++V+ESL+ AGA D  G+SR  LL    +        +K  +    ++F    G+  D
Sbjct: 896  CNKKVVESLIKAGAFDSLGHSRKGLLLVHADAIDAVMSTKKAASLGQFDLFGSMDGSGGD 955

Query: 937  ---------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                      + + +    +S  +   E+ +LG Y SGHPL   +  L         + V
Sbjct: 956  DGDELGGIFDVKVPE-EEWDSKHKLAVEREMLGLYVSGHPLQGLEQALAAKADTSIADIV 1014

Query: 988  A--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G  + +  ++ +  ++  + G         + A   E  FFP
Sbjct: 1015 EGSVAEGGQVTVGGILANVNRRVNKNGEPWASAQIEDLAGGIEVLFFP 1062


>gi|268610019|ref|ZP_06143746.1| DNA polymerase III DnaE [Ruminococcus flavefaciens FD-1]
          Length = 1135

 Score = 1017 bits (2630), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1034 (35%), Positives = 590/1034 (57%), Gaps = 28/1034 (2%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S  FVHL +H+ YSLL+GA  L  +++ I +  Q A+AITD  N++ A+EF  +A  AG
Sbjct: 2    NSSDFVHLHLHTEYSLLDGACRLKPLMEHIKSLGQTAVAITDHGNMYGAVEFWNEAKNAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIGC++ +  +       +  +   +   ++LL    EGY+ L++LVS   +     
Sbjct: 62   IKPIIGCEVYVARRTRHDRDPKLDS---SPYHLILLCKNNEGYKNLVKLVSIASIEG-FY 117

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVN 185
               R+ L  L++    GLI L+   +G I R    ++ + A+   +T+  +FG+   ++ 
Sbjct: 118  NKPRVDLELLKKYHD-GLICLSACLAGEIPRLLNNSTYEEAKAVAMTYLDIFGEGNYFIE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    +R     + +L+    +PL ATN+  ++S++D E  +VL+ +    ++ + +
Sbjct: 177  IQDHGIAAERKILPHLYRLSEETGIPLAATNDCHYISKDDAEMQNVLICIQTGKILGEPN 236

Query: 245  RPRVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                  D +  K+  EM  +F+   EAL+NT  IA  C+   +     LP+F  +   D 
Sbjct: 237  GMSFETDEFYVKSTEEMAELFAGHEEALKNTARIAEMCNVEFEFGNIKLPKFTVEGVTDN 296

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                E   R+    G+  R  +   +K        +RL++EL+VI RM ++ YFLIV DF
Sbjct: 297  ----EAYFRDLCRKGMYERYGRSPDSK------VEERLEYELSVITRMGYTDYFLIVWDF 346

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++A+ +N+PVGPGRGSGAGS+ AY + IT IDP++F+LLFERFLNP+R+SMPDFDIDFC
Sbjct: 347  IRYARDHNVPVGPGRGSGAGSLCAYCIGITGIDPMKFNLLFERFLNPERVSMPDFDIDFC 406

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + R  V  YV  KYG + V++II F +L+A+AA+RD GR + +PY+  D++ K I    
Sbjct: 407  IEGRQSVKDYVVRKYGKDYVSEIIAFDTLKARAAVRDTGRVMSLPYALCDKVAKQI---D 463

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                   A+ +     +   +D SV +L++ ++KLEG+ RHASTHAAG+VI   PLS LV
Sbjct: 464  MRNTLDDALKESEELAQLYKSDRSVKKLIDTAKKLEGMPRHASTHAAGVVISAVPLSDLV 523

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+ +    D  VTQ+ M  +E  GL+K DFLGL+ LT+++ +++ + +     D+  I F
Sbjct: 524  PLQK--NDDTVVTQYTMTVLESLGLLKMDFLGLRNLTIIRDAVNEIRRSEPDFDIDKIDF 581

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D   Y +L+   T G+FQ ES+GM   L  + P+ +ED+I ++SLYRPGP+ +I VY  
Sbjct: 582  ADQNVYKMLSDGDTCGVFQFESAGMTARLMELCPERLEDLIVILSLYRPGPMKSIPVYIE 641

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             K   + I   HP++  +L +T G ++YQEQVM+I + ++GYS   AD++RRAM KK  +
Sbjct: 642  NKKHPDSIKYKHPILKDILADTYGCMVYQEQVMEICRKMAGYSYGHADIVRRAMAKKKHD 701

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M K++E+F+SG+ +NG+S+T+A  +F+ +  FA Y FNKSHAAAYA ++YQTA++K HY
Sbjct: 702  VMLKEREKFVSGSVENGVSETVANEVFDEMVSFASYAFNKSHAAAYAYLAYQTAYLKYHY 761

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
               ++AA M+  M + +K+ ++    R   I++  P VN     F   D  +Y+ L AIK
Sbjct: 762  RGIYMAALMSSVMGSSDKLAEYINSCRDNGIKVCCPDVNKSFRGFTFKDGVMYFGLLAIK 821

Query: 844  GVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
              G+  A   I++      F  L+DFC R++ ++LN++ LE+++ AGA D  G +R Q+L
Sbjct: 822  NAGSGLADKLILDRQQHGDFKGLQDFCERIEGRELNKKALENMIKAGAFDGLGLNRRQML 881

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             S +   + A   ++   +    +F +E+ +    + +           F  E+   G Y
Sbjct: 882  DSYETFIEMAGEGKRGVIDGQLGLFRNEE-SHEMGVKISYKPEFEKKRLFAMEKEATGMY 940

Query: 963  FSGHPLDVYK---PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             SG PLD YK    ++    + G       + G N++L   V S +   T++G ++ +  
Sbjct: 941  LSGDPLDSYKWISDLMHTDTVSGLSSPDTAVDGKNVKLLCTVESTKVHITKRGDKMCFAE 1000

Query: 1020 FSEPAKEYEANFFP 1033
             S+     E   FP
Sbjct: 1001 VSDGTGVMECVVFP 1014


>gi|119026148|ref|YP_909993.1| DNA polymerase III subunit alpha [Bifidobacterium adolescentis ATCC
            15703]
 gi|118765732|dbj|BAF39911.1| DNA polymerase III alpha subunit [Bifidobacterium adolescentis ATCC
            15703]
          Length = 1196

 Score = 1017 bits (2629), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/1084 (31%), Positives = 552/1084 (50%), Gaps = 68/1084 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S +FV L  H+ YSLL+GA  + +++ +      PA+ ITD  N+  A E    A  
Sbjct: 1    MATSANFVQLHNHTHYSLLDGASKIPDLVKRAKELGMPAVGITDHGNMHGAYEMWSAAVN 60

Query: 65   AGIQPIIGCQLDIDMQD---------------------NLKMTNQGKTPFPTVPSIVLLV 103
            AGI+PIIG +  +  +                      + +      +    +  + +  
Sbjct: 61   AGIKPIIGIEAYVTPETARQDPTRVSWDTNWNPDLDPLHRRRNPDDVSGGGVITHLTMWA 120

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
               EG   L++  +   L  +  +  R+    L +  ++G+I  +G  SG I        
Sbjct: 121  ENDEGLVNLMKASTDANLEGRVMRYPRMDKEILAKY-SKGIIASSGCPSGIIQTRLRLGQ 179

Query: 164  SQVAEKRLLTFKKLF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLS 221
               A +    F+ +F  D  Y+    H    ++     ++ +A     PL+ATN+S +  
Sbjct: 180  FDDALRAAGEFQDIFGRDNFYIEFMDHGLKIEKQVTDGLLDIAKKLNAPLLATNDSHYTR 239

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARR 280
             ED  A D ++ +   + + +  R +     +Y+K+  EM  +F DLPEA +NT+EIA R
Sbjct: 240  AEDAGAQDAMLCINSGSTLDEPGRFKFDGTGYYIKSAEEMRELFKDLPEACDNTLEIAER 299

Query: 281  CSFILQVHAP--ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
            C+ +   H     +P+F   E  D    E +    K   GLE R        G  + +  
Sbjct: 300  CNVMFDDHEDGAFMPQFDCPEGWD----ETSLFLKKVEEGLERRY------NGKPSLEVL 349

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            ++ D+E  VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DPL
Sbjct: 350  RQADYECGVICQMQFCGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPL 409

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               L+FERFLNP+R+S+PD D+DF  D R  V+ YV  KYG ++VAQ + +G+++ K AL
Sbjct: 410  EHGLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQAL 469

Query: 459  RDVGRALQMPYSQVDRLCKLIP-------NDPAHPV---SLQAIADDSRFREARLADPSV 508
            +D  R +   +S  D++ K +P       + P H +   S +  A+   FRE   +DP  
Sbjct: 470  KDSARIMGYDFSVGDKITKALPPAQTGGKDIPLHDIFDPSAKRYAEAREFRELYDSDPDT 529

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
             R+ + +  +EGL R    HA   ++G  P++   P+  +       T       E  GL
Sbjct: 530  KRITDEAMGIEGLIRQTGVHACATIMGSEPITNTSPL-LERTDGTVTTTLEYHTCETLGL 588

Query: 569  IKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            +K DFLGL  LT+++ +L+ + A    ++D + IP DD  TY LL+   TLG+FQL+S G
Sbjct: 589  VKMDFLGLSNLTVIRDTLNNIEANGKERIDHTKIPLDDRPTYDLLSRGDTLGVFQLDSDG 648

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPM 681
            MR  L+ ++P+   DI AL++LYRPGP+D      Y  RKNG +KI  IHP     +  +
Sbjct: 649  MRSLLKTLKPNNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEV 708

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L ET G+I+YQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G 
Sbjct: 709  LDETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGY 768

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            S+  A  ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K
Sbjct: 769  SEEAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDK 828

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-- 859
               +  +AR+  IQ++ P VN    ++    + + + L AI+ VG      I+    +  
Sbjct: 829  TALYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGKNAVDAIIAERENGH 888

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
              + +  DF  RV  + LNRR++ESL+ AGA D    +R  L    +        +++ +
Sbjct: 889  GKYVNFTDFIKRVPLEALNRRLVESLIKAGAFDSIDPNRRALFTIHETAINSVVGLKRKQ 948

Query: 920  TNKHENIFAH-------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
                 ++FA        +       + +      +   +   E+ +LG Y S HPL   +
Sbjct: 949  AEGQFDLFADLDDSKENDSAMGDAMVQVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQ 1008

Query: 973  PILRKMGIKGYEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             IL  +        +        G  + +A ++ +  ++ ++KG+    VT  +     +
Sbjct: 1009 SILVSLREMSIAHLIDRAGSMPDGQQVTIAGLITNVDRRVSKKGNPWAIVTVEDLESSIQ 1068

Query: 1029 ANFF 1032
              FF
Sbjct: 1069 CMFF 1072


>gi|154488936|ref|ZP_02029785.1| hypothetical protein BIFADO_02245 [Bifidobacterium adolescentis
            L2-32]
 gi|154083073|gb|EDN82118.1| hypothetical protein BIFADO_02245 [Bifidobacterium adolescentis
            L2-32]
          Length = 1196

 Score = 1017 bits (2629), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/1084 (31%), Positives = 552/1084 (50%), Gaps = 68/1084 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S +FV L  H+ YSLL+GA  + +++ +      PA+ ITD  N+  A E    A  
Sbjct: 1    MATSANFVQLHNHTHYSLLDGASKIPDLVKRAKELGMPAVGITDHGNMHGAYEMWSAAVN 60

Query: 65   AGIQPIIGCQLDIDMQD---------------------NLKMTNQGKTPFPTVPSIVLLV 103
            AGI+PIIG +  +  +                      + +      +    +  + +  
Sbjct: 61   AGIKPIIGIEAYVTPETARQDPTRVSWDTNWNPDLDPLHRRRNPDDVSGGGVITHLTMWA 120

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
               EG   L++  +   L  +  +  R+    L +  ++G+I  +G  SG I        
Sbjct: 121  ENDEGLVNLMKASTDANLEGRVMRYPRMDKEILAKY-SKGIIASSGCPSGIIQTRLRLGQ 179

Query: 164  SQVAEKRLLTFKKLF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLS 221
               A +    F+ +F  D  Y+    H    ++     ++ +A     PL+ATN+S +  
Sbjct: 180  FDDALRAAGEFQDIFGRDNFYIEFMDHGLKIEKQVTDGLLDIAKKLNAPLLATNDSHYTR 239

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARR 280
             ED  A D ++ +   + + +  R +     +Y+K+  EM  +F DLPEA +NT+EIA R
Sbjct: 240  AEDAGAQDAMLCINSGSTLDEPGRFKFDGTGYYIKSAEEMRELFKDLPEACDNTLEIAER 299

Query: 281  CSFILQVHAP--ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
            C+ +   H     +P+F   E  D    E +    K   GLE R        G  + +  
Sbjct: 300  CNVMFDDHEDGAFMPQFDCPEGWD----ETSLFLKKVEEGLERRY------NGKPSLEVL 349

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            ++ D+E  VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DPL
Sbjct: 350  RQADYECGVICQMQFCGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPL 409

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               L+FERFLNP+R+S+PD D+DF  D R  V+ YV  KYG ++VAQ + +G+++ K AL
Sbjct: 410  EHGLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQAL 469

Query: 459  RDVGRALQMPYSQVDRLCKLIP-------NDPAHPV---SLQAIADDSRFREARLADPSV 508
            +D  R +   +S  D++ K +P       + P H +   S +  A+   FRE   +DP  
Sbjct: 470  KDSARIMGYDFSVGDKITKALPPAQTGGKDIPLHDIFDPSAKRYAEAREFRELYDSDPDA 529

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
             R+ + +  +EGL R    HA   ++G  P++   P+  +       T       E  GL
Sbjct: 530  KRITDEAMGIEGLIRQTGVHACATIMGSEPITNTSPL-LERTDGTVTTTLEYHTCETLGL 588

Query: 569  IKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            +K DFLGL  LT+++ +L+ + A    ++D + IP DD  TY LL+   TLG+FQL+S G
Sbjct: 589  VKMDFLGLSNLTVIRDTLNNIEANGKERIDHTKIPLDDRPTYDLLSRGDTLGVFQLDSDG 648

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPM 681
            MR  L+ ++P+   DI AL++LYRPGP+D      Y  RKNG +KI  IHP     +  +
Sbjct: 649  MRSLLKTLKPNNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEV 708

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L ET G+I+YQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G 
Sbjct: 709  LDETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGY 768

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            S+  A  ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K
Sbjct: 769  SEEAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDK 828

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-- 859
               +  +AR+  IQ++ P VN    ++    + + + L AI+ VG      I+    +  
Sbjct: 829  TALYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGKNAVDAIIAERENGH 888

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
              + +  DF  RV  + LNRR++ESL+ AGA D    +R  L    +        +++ +
Sbjct: 889  GKYVNFTDFIKRVPLEALNRRLVESLIKAGAFDSIDPNRRALFTIHETAINSVVGLKRKQ 948

Query: 920  TNKHENIFAH-------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
                 ++FA        +       + +      +   +   E+ +LG Y S HPL   +
Sbjct: 949  AEGQFDLFADLDDSKENDSAMGDAMVQVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQ 1008

Query: 973  PILRKMGIKGYEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             IL  +        +        G  + +A ++ +  ++ ++KG+    VT  +     +
Sbjct: 1009 SILVSLREMSIAHLIDRAGSMPDGQQVTIAGLITNVDRRVSKKGNPWAIVTVEDLESSIQ 1068

Query: 1029 ANFF 1032
              FF
Sbjct: 1069 CMFF 1072


>gi|170729407|ref|YP_001774840.1| DNA polymerase III subunit alpha [Xylella fastidiosa M12]
 gi|167964200|gb|ACA11210.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
          Length = 1193

 Score = 1017 bits (2629), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1078 (38%), Positives = 624/1078 (57%), Gaps = 74/1078 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             + SFVHL +H+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  L I              P  T   + LL     GY  L
Sbjct: 62   FALIKFYKAAETVGIKPISGADLLIA------------EPEHTPWGMTLLCRDHAGYLNL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
             +L+SR +L     +  V +   W+++   + L  L G     + + F    + +AE++L
Sbjct: 110  SQLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIG-RHSLVGQLFAKGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R         +Q  +Q+A    +P++A+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + +A   ++    RPR  +   YL++  EM ++F+D+P+AL+NT  +A+RC+  +++  
Sbjct: 228  RVCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +     + +    ++ +R ++  GLE RL +  +A G   +DY  RL+FEL+ I 
Sbjct: 288  YFLPNYPVPNDETL----DSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M FSGYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC +RRDEVI YV  KYG ERV+QIIT+G++ AKA +RDVGR L  PY
Sbjct: 404  PERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADD------SRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIP+     +       +      +   +   A+  V  LL ++++LE L R
Sbjct: 464  GLVDSVAKLIPSTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PL++  P++ +   +     PVTQF+   +E+ GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRGV-----KVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  + +R        VD++ +P DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINKRHARACIDPVDITALPLDDLPTYKDIFASGNTSAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +  RK+G ++ +   P    +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+    A  IF+L+
Sbjct: 704  QVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  +AR  N
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLN 823

Query: 814  IQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
            ++++ P++N     F+        Y L AIKGVG +    I++      P+ SL DFC+R
Sbjct: 824  LKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930
            V S KLNRR LE+++ AGALD  G +R  ++  L  + K  + + + R +   ++F + +
Sbjct: 884  VTSAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNAD 943

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE----- 985
             GT + ++ L +      +     E+  LG YFSGHP D Y+  ++++            
Sbjct: 944  PGTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALER 1003

Query: 986  -SVATIRGN----------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +  RGN          N  LA +VVS ++    KG    +V   +     E + F
Sbjct: 1004 ILSSQQRGNGEKRTWQPEVNTILAGLVVSMRR----KGDSQVFVQLEDGRGRIECSAF 1057


>gi|283856496|ref|YP_163273.2| DNA polymerase III subunit alpha [Zymomonas mobilis subsp. mobilis
            ZM4]
 gi|283775500|gb|AAV90162.2| DNA polymerase III, alpha subunit [Zymomonas mobilis subsp. mobilis
            ZM4]
          Length = 1174

 Score = 1017 bits (2629), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/1047 (44%), Positives = 638/1047 (60%), Gaps = 32/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FV L++ S +++LEGA+   +I         PA  I D N L+  + FS     
Sbjct: 1    MPYTP-FVPLRIFSGFTMLEGAIEPKDITQHAKKMGFPAAGICDRNGLYGVMTFSDSGKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPIIG  L +          +       +  + L     +GY  L  LVS  +L   
Sbjct: 60   DGVQPIIGSLLAVA---RPLRGGEASGQELKIDWLPLYAQDEDGYNNLCALVSHAHLGRP 116

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    + + +L E  ++GL+ LTGG  G + R         AE  L   +K+F DRLY+
Sbjct: 117  LELPPHVSMEFL-EQHSQGLLALTGGKEGALARLLAEEQQSEAEAYLTLLQKIFPDRLYI 175

Query: 185  NLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R          + ++ LAY   +PLVATN   FL  + + AHD ++ +A S  V   
Sbjct: 176  ELSRRSEEIEEAAEEGLIDLAYDRNIPLVATNPVCFLEADFHPAHDAMLCIADSAYVDSP 235

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR   +P+ ++K+  EM  +F D+PEA++N++ IA+RC+    V  PILP          
Sbjct: 236  DRRHSSPEAWMKSGEEMARLFEDIPEAIQNSLVIAQRCAVAAPVRKPILPSLAGD----- 290

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ E   LR  A AGLE RLA          + Y +RL +ELN+I  M F GYFLIVADF
Sbjct: 291  REGETLMLRKDAWAGLEARLAAMTTP--VDRKAYEERLQYELNIIENMGFPGYFLIVADF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N IPVGPGRGSGAGSV A+ALTIT++DPLR  LLFERFLNP+R+SMPDFDIDFC
Sbjct: 349  IKWAKSNQIPVGPGRGSGAGSVVAWALTITNLDPLRLGLLFERFLNPERVSMPDFDIDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RR EVI YVQ+KYG + VAQIITFG ++A+A L+D GR LQM Y QVDRL KL+P+  
Sbjct: 409  ETRRSEVISYVQHKYGLDHVAQIITFGRMKARAVLKDTGRVLQMSYGQVDRLAKLVPSQA 468

Query: 484  AHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            + P +L  A+        A   +  V RLL+++ KLEGL RH+STHAAG+VIGDRPL QL
Sbjct: 469  SDPWTLDRALNGVPEIASAYENEEDVHRLLDLAMKLEGLPRHSSTHAAGVVIGDRPLHQL 528

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD RSD PVTQF+MK++EK GL+KFDFLGLKTL++L K++  L  RGV+VDL  IP
Sbjct: 529  VPLYRDPRSDFPVTQFDMKYVEKTGLVKFDFLGLKTLSVLNKAVQMLKARGVEVDLDHIP 588

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD   + LL    T+G+FQLES GMR+ L  ++P   EDIIALV+LYRPGP+DNI  + 
Sbjct: 589  LDDEAVFELLKQGDTVGVFQLESEGMRRTLAAVKPTRFEDIIALVALYRPGPMDNIPSFG 648

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RKNG E+IV  HPL++P+LKET G+I+YQEQVMQ AQ+L+GYSL EAD+LRRAMGKKI+
Sbjct: 649  ARKNGGEEIVYPHPLLEPVLKETYGIIVYQEQVMQAAQVLAGYSLGEADLLRRAMGKKIQ 708

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EMD Q+ RF+ G+ K+ I++  A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K H
Sbjct: 709  SEMDAQRSRFVEGSKKHDITENQANQLFDLIDKFAGYGFNKSHAAAYALVAYQTAWLKAH 768

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            Y  EF AA+M  +M   +K++ F  D R+  ++ +PP +N    DF V D  + Y+L A+
Sbjct: 769  YRAEFYAAAMCFDMALTDKLQVFVDDMRRSGLRYLPPDINRSQSDFTVEDGCVRYALGAL 828

Query: 843  KGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGVG      I  E   +  F SL+DF +R++ + LNRR LESL  AGA D  G  R  +
Sbjct: 829  KGVGEKAMDDICQEREKNGAFKSLDDFANRINPEHLNRRQLESLASAGAFDSLGVDRCAV 888

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             QS + I   A  + + R +    +F  E+      I L +  + + + R   E+   GF
Sbjct: 889  KQSSEMIIGTAANIHRMRKSGQGGLFGMEEMAM-PSIKLPEDKIWSLTERMNAEKEAFGF 947

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATI--------------RGNNI--RLAAMVVSKQ 1005
            +FS HP+D Y+ +L  + I+   +                   R   I  ++AAM+   +
Sbjct: 948  FFSSHPIDNYRSLLSSLRIRSRADINRLAPPSYPQDDENPQDYRKKRIATQMAAMIEDVR 1007

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + + +G R   V  S+ + ++ A+ F
Sbjct: 1008 WRDSARGRRYMMVAASDASGQFFASCF 1034


>gi|15677663|ref|NP_274824.1| DNA polymerase III, alpha subunit [Neisseria meningitidis MC58]
 gi|14194679|sp|Q9JXZ2|DPO3A_NEIMB RecName: Full=DNA polymerase III subunit alpha
 gi|7227081|gb|AAF42162.1| DNA polymerase III, alpha subunit [Neisseria meningitidis MC58]
 gi|316984432|gb|EFV63405.1| DNA polymerase III subunit alpha [Neisseria meningitidis H44/76]
 gi|325139647|gb|EGC62186.1| DNA polymerase III, alpha subunit [Neisseria meningitidis CU385]
 gi|325200888|gb|ADY96343.1| DNA polymerase III, alpha subunit [Neisseria meningitidis H44/76]
          Length = 1144

 Score = 1016 bits (2628), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1034 (38%), Positives = 583/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   D                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVRIGNPDAPDK----------PFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARTAALKYAAWFPDAFYMELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+SL +A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLSLEKAMETEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       +D+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIIDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    + +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++     +        +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPTKLDRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQVEIMV 1014


>gi|269219520|ref|ZP_06163374.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 848
            str. F0332]
 gi|269211099|gb|EEZ77439.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 848
            str. F0332]
          Length = 1175

 Score = 1016 bits (2627), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1065 (33%), Positives = 557/1065 (52%), Gaps = 50/1065 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  F HL VH+ YS+L+GA  +  ++ +  A  Q A+AITD    F A EF ++  A G+
Sbjct: 2    AKDFAHLHVHTEYSMLDGAAKIKKLVAQAKAQNQKAVAITDHGYCFGAYEFYKECKAQGV 61

Query: 68   QPIIGCQLDIDMQ------DNLKMTNQGKTPFP-----TVPSIVLLVSTAEGYQRLIELV 116
            +PIIG +  +         D +    +G+             + LL    +G   L  + 
Sbjct: 62   KPIIGVEAYMTPGTSRFGSDRVLWGEEGQRADDVSARGAYTHLTLLAYNNKGLHNLFRMD 121

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            SR  L  Q  +  R+ +  L+    EGLI   G  SG +           A +     + 
Sbjct: 122  SRASLEGQMGKWPRMDMDLLETYH-EGLIATAGCPSGEVQTRLRLGQFDEAYEAAGRMQD 180

Query: 177  LF-GDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            LF  +  YV +  H    ++   ++++ LA   + PL+ATN+S ++   D    D ++ +
Sbjct: 181  LFGKENYYVEVMDHDNSIEKRVRNELLDLARKIDAPLIATNDSHYVEAGDAPIQDAMLCI 240

Query: 235  AHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAP 290
               + +   DR       ++L++  EM  +F DLP A ENT+ +A RC+         A 
Sbjct: 241  NSGSTLQDPDRFTFDGTGYHLRSSEEMHELFGDLPGACENTLLVAERCNVSFTTADEGAN 300

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             +P F   E +D+     +    +   GL VR  +   A      D R+R D+E++VI +
Sbjct: 301  YMPVFPVPEGEDLT----SWFVKEVDRGLHVRFGERIPA------DVRERADYEVSVILQ 350

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F GYFL+V+D+I WAK+N I VGPGRGSGAGS+ AYAL IT++DP+R  LLFERFLNP
Sbjct: 351  MGFPGYFLVVSDYILWAKRNGIRVGPGRGSGAGSMVAYALQITELDPIRHGLLFERFLNP 410

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPD D+DF + RR EVI YV+ KYG E+V+Q++TFG+++ K AL+D  R L  P+ 
Sbjct: 411  ERVSMPDIDVDFDERRRGEVIEYVEKKYGAEKVSQVVTFGTIKTKQALKDSARVLGYPFE 470

Query: 471  QVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGL 521
              +R+ K +P       ++L  I ++          FR+    D    ++ E++Q L GL
Sbjct: 471  MGERMTKALPPTVQGKDIALADIHNEKAERFVEAGDFRQLVAGDQDASKVFELAQGLAGL 530

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HA  +++   PL  ++P+ +       +TQF     E+ G++K DFLGL  LT 
Sbjct: 531  TRQWGVHACAVLMCSEPLMDVIPIMKRPSDGATITQFEYPLCEELGVLKMDFLGLSNLTT 590

Query: 582  LQKSLDFLAQRGVKVD-LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++ +LD +   G +   +  +  DD  T+ LL    TLG+FQL+ SGMR  L+ M+P   
Sbjct: 591  IEDALDNIVYNGKERVAIEEVELDDQPTFELLQRADTLGVFQLDGSGMRALLKQMRPTEF 650

Query: 641  EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQ 694
            EDI A+ +LYRPGP+       Y  RKNG ++I  IHP ++     +L  T G+I+YQEQ
Sbjct: 651  EDISAVSALYRPGPMGMNSHTSYALRKNGLQEIAPIHPELEEPLREILAPTYGLIVYQEQ 710

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VMQIA++ +G+++ +AD LR+AMGKK  + + KQ E F +G   NG SK     ++E+L 
Sbjct: 711  VMQIARVCAGFTMGQADTLRKAMGKKKLDVLQKQFEGFSAGMLANGYSKECVDRLWEILV 770

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNKSH+A Y VISY TA++K +YPVEF+AA +T + DN +K+  +  + R+  I
Sbjct: 771  PFAQYAFNKSHSACYGVISYWTAFLKANYPVEFMAALLTSKKDNKDKLALYLGECRRMGI 830

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVD 873
             ++ P VN    DF     ++ + L+A++ VG      I+        F S +DF  +V 
Sbjct: 831  TVLVPDVNDSDSDFSAVGEQVRFGLSAVRNVGANVVEGILGARREKGAFTSFQDFLDKVP 890

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             +  N+R +E LV AGA D  GYSR  LL  ++        ++KN      ++F      
Sbjct: 891  LQVCNKRAIECLVKAGAFDSMGYSRKALLAKVEEAVDSVVSLKKNEAAGQFDLFGGADVD 950

Query: 934  FSD--KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                  + +      +  V+ ++E+ +LG Y S HPL   + +L +         +    
Sbjct: 951  LGAGVDVVVPDIPEWDKKVKLDHERDMLGLYVSDHPLSGMEHVLDRAADTTIVRLMNEES 1010

Query: 992  GNN--IRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
                 + LA ++ S Q + ++K G     +   +     E NFFP
Sbjct: 1011 IQEGFVSLAGLITSVQPRVSKKNGKLWATIILEDLTGSAEINFFP 1055


>gi|329120922|ref|ZP_08249554.1| DNA-directed DNA polymerase III alpha subunit [Dialister
            micraerophilus DSM 19965]
 gi|327471381|gb|EGF16832.1| DNA-directed DNA polymerase III alpha subunit [Dialister
            micraerophilus DSM 19965]
          Length = 1138

 Score = 1016 bits (2627), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1032 (36%), Positives = 572/1032 (55%), Gaps = 28/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YSL +G   +  ++  +    Q AIAITD   ++ A+   ++    GI+P
Sbjct: 3    SFVHLHSHTEYSLFDGISRIKELVSYVKELGQQAIAITDHGAMYGAVYLYKECMKQGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +      K  N  K     +  ++LL    EGYQ LI++ S+ ++        
Sbjct: 63   IIGCELYVTADSRFKKGNAFKE---KLGHLILLAENNEGYQNLIKICSKAWVEG-YYVKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L++  ++G+I LT    G I +A      + A K    +   F  +  ++ LQ 
Sbjct: 119  RVDHDLLRKY-SKGIIALTSCIGGEIPQAILNGDKEKARKLTEFYIDTFGRNNFFLELQN 177

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +      ++  +A  + L LVATN+  ++ +ED ++H++ + ++    +   +   
Sbjct: 178  HGMPEEAIVRQELSLIAKEYNLGLVATNDFHYVRKEDAKSHEIKLCISTGNTLDNPNHFA 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + Y K+  EM S+  + P A+ENT  IA RC+  L      LP +         + 
Sbjct: 238  FANNEFYCKSGEEMKSLLGEFPGAIENTKIIAERCNVKLTFGKHKLPSYDVP----CGET 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR      L  R       +         RL++ELN+I +M FS YFLIV DFI++
Sbjct: 294  AATYLRKLCFDALPKRYPHFNDKE-------ESRLNYELNIINQMGFSDYFLIVMDFIRY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IP+GPGRGS AGS+ AY L IT+IDPLRF LLFERFLNP+R+SMPD D D C  R
Sbjct: 347  AKNKGIPIGPGRGSAAGSIVAYLLDITEIDPLRFDLLFERFLNPERVSMPDIDTDLCYRR 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E+I Y+++KYG E+VAQIITFG+L A+A +RDVGR + +P  +VDR+ K+IP  P   
Sbjct: 407  RGEIIEYLKSKYGEEQVAQIITFGTLAARAVIRDVGRVMSIPLKEVDRIAKMIPGGPGVT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +    +     F      + +V  L++   KLEGL R + THAAG+VI  +P+ + VP+ 
Sbjct: 467  LK-STLESSRDFLNEYENNNTVRTLVDHCIKLEGLSRQSGTHAAGVVICSKPVYEYVPIQ 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
               + D   TQ+     E+ GL+K D LGL+ LT++  +L  + + RG+ V +S I   D
Sbjct: 526  L-TQDDFIQTQYEKDLDEELGLLKMDLLGLRNLTVIHDTLQMIKENRGITVKMSEIDDSD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
             +T ++L    T+G+FQ ES G    L  + P+  ED+I +V+LYRPGP+ + +   + N
Sbjct: 585  AKTCNMLCMGDTVGVFQSESDGFTNLLMQLHPERFEDLIPMVALYRPGPLGSGMAEDFIN 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+GK K+   HP ++ +LKET GVI+YQEQVMQIA  + G++L ++D+LRRAMG K  E
Sbjct: 645  RKHGKTKVDYPHPSLEKILKETYGVILYQEQVMQIASEMGGFTLGQSDLLRRAMGHKEPE 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  Q+E F+ GA   GI K+I+ ++F+L+  FA YGFNKSH+  Y  I+++TA++K ++
Sbjct: 705  ILQAQRELFVKGAEGKGIDKSISNHVFDLMVHFAGYGFNKSHSVCYGRIAWETAYLKANF 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              EF+A+ MT  + ++ K+ ++ ++ R+  I+++ P +N     F V    I + L+ I+
Sbjct: 765  RPEFMASMMTCYIGDINKVNRYIENTRKAGIKVLAPDINKSQAYFSVKGENIIFGLSGIQ 824

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG     HI+E+      F  L D   R+DSK LN R  ESL+  GALDCFGY R QLL
Sbjct: 825  NVGENAVNHIIESRNKKGDFKDLIDLLERIDSKILNSRACESLIKCGALDCFGYDRSQLL 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              LD+    A     +R    +N+FA  +     +I        +   +   E+++LGFY
Sbjct: 885  AVLDDAINIAASGRFDRDAGQQNLFAESE--IIREIDYPDIEPMSKKEKLHWEKKLLGFY 942

Query: 963  FSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             SGHPLD Y  ++      K ++ +     G  + +  +V   ++  T+KG  +G+ T  
Sbjct: 943  VSGHPLDEYSDMIESFVKSKVFDNNDIDYDGRIVTMCGIVTRVKKTITKKGLSMGYATLE 1002

Query: 1022 EPAKEYEANFFP 1033
            +   E+E   FP
Sbjct: 1003 DYDGEFECVIFP 1014


>gi|45656127|ref|YP_000213.1| DNA polymerase III subunit alpha [Leptospira interrogans serovar
            Copenhageni str. Fiocruz L1-130]
 gi|45599360|gb|AAS68850.1| DNA polymerase III alpha subunit [Leptospira interrogans serovar
            Copenhageni str. Fiocruz L1-130]
          Length = 1173

 Score = 1016 bits (2626), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1035 (36%), Positives = 593/1035 (57%), Gaps = 28/1035 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL +H++YS+L+GA+ +  ++  +      ++A+TD  N+F A+EF  +A   GI+P
Sbjct: 7    DFAHLHLHTNYSMLDGAIRIKELMQHVKECGMSSVAMTDHGNMFGAVEFYNEAIKQGIKP 66

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +   +  + T   K        ++LL    EGY+ LI L S+ Y      +  
Sbjct: 67   IIGSEFYVSP-NRKQETEMVKIADGNAYHLILLAKNEEGYKNLIRLSSKSYTEG-FYKKA 124

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            RI    L    +EGL+ LT   +G ++R         + +      ++F  +  Y+ +Q 
Sbjct: 125  RIDYDLLDR-HSEGLVCLTACLAGEVNRKILEGKIDESFQLAGKLNEIFRKEDFYMEIQN 183

Query: 189  HRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++   + QV +      +PLV TN+S FL + D EA D+L+ +     ++      
Sbjct: 184  HGIPEQMTVAKQVYEFGKKTGIPLVVTNDSHFLKKNDQEAQDILLRIGMQKRITDPMEFG 243

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + Y+KN  EM  IF ++PEA  NT+EI+ + +  LQ    +LP F   E  D     
Sbjct: 244  FNGEFYVKNGDEMAKIFPEIPEAFYNTLEISNKVNLKLQFGNYLLPEFEVPEGYDA---- 299

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++ L      G+E +           + + ++R+ FELN I  MKF+GYFLIV D+I +A
Sbjct: 300  DSYLEKLIWEGIERKYLN-------LSPEIKERVIFELNTIKNMKFAGYFLIVQDYINYA 352

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N IPVGPGRGS AGS+ AYAL IT+++PL+ +LLFERFLNPDR  MPD D DFC +RR
Sbjct: 353  KRNGIPVGPGRGSAAGSIVAYALGITNVEPLQHNLLFERFLNPDRKDMPDIDTDFCVERR 412

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI Y++ +YG E+V QIITF SL AKAAL+DV R L +P+ + + + K  PN     +
Sbjct: 413  EEVINYIRRRYGEEKVGQIITFNSLAAKAALKDVARVLNLPFGEANEMTKAFPNKLGMSI 472

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            S +A++  S  +     D    ++  I+Q+LEG YR    HAAG+VI   PL ++VP+  
Sbjct: 473  S-EALSTSSELKNFSEKDDINHKIFAIAQRLEGNYRQPGRHAAGVVISPYPLEEVVPLST 531

Query: 548  DVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601
                + P     VTQ++   +E  GLIK D LGLK LT L  ++  + QR  ++++L  I
Sbjct: 532  VAEKEKPGVRAIVTQYDKNNLESIGLIKMDILGLKNLTTLDYAIKLIEQRRGIRINLDEI 591

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
             +DD  TY LL    TLGIFQLES+G+   +   Q    ++I+AL++LYRPGP+   ++ 
Sbjct: 592  SYDDANTYSLLRKANTLGIFQLESTGITDLVAKSQVSNFDEIVALIALYRPGPMGEGMLD 651

Query: 661  -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y +RK+GK+++   HP  +P+LKET GV +YQEQVM I++++ G+S+ ++DVLR+AM K
Sbjct: 652  EYLDRKSGKKQVTYPHPSCEPILKETFGVPVYQEQVMSISRVVGGFSVGDSDVLRKAMAK 711

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  + MDK K +F+ GA K GI + +A ++FE L +F  YGFNKSH+ AYA+I+YQTA++
Sbjct: 712  KKADLMDKLKVQFVEGAVKQGIQEKVAKDLFEQLERFGGYGFNKSHSVAYAIITYQTAYL 771

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYS 838
            K +Y +E+L A +  +      I K+  +AR+  IQI+ P V+     F V  +  I + 
Sbjct: 772  KANYTIEYLTALLASDHGKTTDIVKYINNAREMGIQILNPDVSESQASFSVIDNTTIRFG 831

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L+A+KGVG T A  I++A      F +L+DF   +D++ +N++V E+L+ AGALD FGY+
Sbjct: 832  LSAMKGVGETAANSIIQARTKVGSFRTLQDFALNIDTRLINKKVFEALIQAGALDSFGYT 891

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  L +S+D+I  +AQ  ++       ++F +E+ +FS  +  +         + + E+ 
Sbjct: 892  RKCLFESVDSILTFAQKEQERANEGQFSLFGNEESSFSLNLPKDAL-EWEIDEKLKREKA 950

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            + G Y SGHPLD Y+  L+ +     E+      G  + +A ++ SK  K +++      
Sbjct: 951  IAGLYLSGHPLDKYEKQLKSLKTIPIEKFDDLKSGTKVEVAGVISSKNIKLSKRNEEFAN 1010

Query: 1018 VTFSEPAKEYEANFF 1032
                +   E E   F
Sbjct: 1011 FKLEDRTGEIECVAF 1025


>gi|21672514|ref|NP_660581.1| DNA polymerase III alpha chain [Buchnera aphidicola str. Sg
            (Schizaphis graminum)]
 gi|25008381|sp|Q8K9S3|DPO3A_BUCAP RecName: Full=DNA polymerase III subunit alpha
 gi|21623135|gb|AAM67792.1| DNA polymerase III alpha chain [Buchnera aphidicola str. Sg
            (Schizaphis graminum)]
          Length = 1161

 Score = 1016 bits (2626), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1048 (39%), Positives = 620/1048 (59%), Gaps = 47/1048 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YS+++G     +++ K       A++ITD NNL+ A++F   A   G++PI
Sbjct: 6    FVHLHVHSDYSIVDGLSKPEDLIKKSVNLGMKALSITDFNNLYGAIKFYNAAHKWGLKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129
            IG  +    +               +  + LL +  +GY+ LI L+SR Y      ++ V
Sbjct: 66   IGVTVKFFSE----------LIKNELTELTLLATNQDGYKNLILLISRAYKKGYFCEKYV 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   WL E+   GLI+L+GG  G I +      + +    L  ++K F    Y+ L R 
Sbjct: 116  TIEKKWLSEL-NNGLILLSGGCQGEIGKTLLRGQTSLISDCLHFYEKYFSGFYYLELIRT 174

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247
            +R  +    S  V L+Y+  +P+VATN+  FL++ED++ H + +A+     +   K +  
Sbjct: 175  YRENEEKYLSLAVDLSYSQNIPVVATNDVCFLNKEDFKIHKIRIAINEGVRLKESKIQNN 234

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   +LK   EM  +FSD+PEA+ N+VEI++RC+  ++     LP+F  ++        
Sbjct: 235  YSKHQFLKTEKEMCFLFSDIPEAIINSVEISKRCNVFIKSGQYFLPQFNTRKI-----SI 289

Query: 308  ENELRNKAVAGLEVRLAQGAIA-KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            EN L  K+  GL+ RL              Y+ RLD EL +I +M F  YFLIV +FIQW
Sbjct: 290  ENYLIQKSNKGLKKRLESNFKKVDKEIFLKYKNRLDTELGIINKMGFPSYFLIVMEFIQW 349

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK NNIPVGPGRGSGAGS+ AY L IT++DPL F LLFERFLNP+R+S+PDFDIDFC ++
Sbjct: 350  AKDNNIPVGPGRGSGAGSLVAYVLNITEVDPLFFDLLFERFLNPERISLPDFDIDFCMEK 409

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD VI +V + YG E VAQIITFG++ AKA +RDVGR L  PY  ++ L KL+P DP   
Sbjct: 410  RDRVIEHVVHTYGRESVAQIITFGTMTAKAVIRDVGRVLGYPYGFINNLSKLVPLDPGIT 469

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A + +S       +D  +  L+++S+KLEG+ R+   HA G+VI    ++   P+Y
Sbjct: 470  LK-DAFSKNSELYTLYKSDEDIQNLIDVSKKLEGVNRNVGKHAGGVVISPSKITDFCPVY 528

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----RGVKVDLSLI 601
             D + + PVTQF+   IE  GL+KFDFLGL+TLT++  +++ + +         ++++ I
Sbjct: 529  CDEKGNNPVTQFDKNDIEYVGLLKFDFLGLRTLTIINCAVNMINKNLLLSNKKTININSI 588

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV-- 659
            P ++ + + LL    T GIFQLES GM+  ++ +QPDC EDIIAL++L+RPGP+ + +  
Sbjct: 589  PLNESKCFLLLKKCETTGIFQLESYGMKDLVKRLQPDCFEDIIALIALFRPGPLQSGMVD 648

Query: 660  VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
             + NRK+G E+I        H L+ P+L+ T G+I+YQEQVMQIAQ+L+GY+L +AD+LR
Sbjct: 649  NFINRKHGYEEISYPDHKWQHILLKPVLESTYGIILYQEQVMQIAQILAGYTLGKADILR 708

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAM KK  ++M +Q+  FI GA KNGI++ +A+ IF+LL KFA YGFNKSH+ AYA++SY
Sbjct: 709  RAMSKKNIKDMAEQRSIFIEGAQKNGINRKLAIKIFDLLEKFAGYGFNKSHSVAYALVSY 768

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QT W+K HYP EF+A++MT ++DN +KI     ++ Q  I+I+PP++N    +F V   +
Sbjct: 769  QTLWLKAHYPSEFMASAMTSDIDNTDKIVMLVNESIQMGIKIIPPNINLSKYEFYVDHTK 828

Query: 835  IY-YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               Y L A+KG+G     +++ E   +  F  L D C R D  K+ R+VLE L+ +G+ D
Sbjct: 829  NIVYGLGAVKGIGRNPILNLVQEREKNGLFSDLFDLCMRTDPNKITRKVLEKLIMSGSCD 888

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF------SVE 946
            CF  +R  LL  +++  K ++   K +  + E++F    G+F +++ + K       S  
Sbjct: 889  CFNKNRNYLLSLIEDAIKASKEHFKIKKFQQESLF----GSFKEELNILKKNNNLLNSFS 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYEESVATIR-GNNIRLAAMVVSK 1004
            +   + ENE +VLG Y +GHP+D Y   L+  +    + +          I +A +VVS 
Sbjct: 945  DEEKKLENEHKVLGLYLTGHPIDRYAEELKYYLNNSTFSKLKLFNHTKKKIMVAGIVVSI 1004

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + K T+  +RI  +   +     E   F
Sbjct: 1005 KTKVTKNKNRIVILILDDSTGLLEVVIF 1032


>gi|296121520|ref|YP_003629298.1| DNA polymerase III, subunit alpha [Planctomyces limnophilus DSM 3776]
 gi|296013860|gb|ADG67099.1| DNA polymerase III, alpha subunit [Planctomyces limnophilus DSM 3776]
          Length = 1176

 Score = 1016 bits (2626), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1046 (36%), Positives = 574/1046 (54%), Gaps = 31/1046 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  F HL  HS +SLL+GA  L+ ++ K+ A    ++AITD  NL+ AL+F   A  
Sbjct: 1    MTSSRPFAHLHCHSQFSLLDGATRLDGLIKKVKASGMNSVAITDHGNLYGALDFYLMAKG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+ PI+G +  I     L+ +   +    +   + LL     G+Q L++L S+ ++   
Sbjct: 61   AGVNPILGMEAYIAPGSRLEKSGASRMKEASY-HLTLLAMNRVGFQNLVKLSSKAFIEG- 118

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L E  +EGLI L+G ++G + +       + AEK    + + FGDR ++
Sbjct: 119  FYYKPRIDKEIL-EAHSEGLICLSGCAAGELSQHLLGERFEEAEKLCHWYSQTFGDRFFM 177

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +Q       R    + V LA    LPLVATN++ +L+ ED    DVL+ V   +  S  
Sbjct: 178  EIQNAGYQIQRDCLERTVDLAKKMGLPLVATNDAHYLNTEDAAVQDVLLCVNTKSERSDP 237

Query: 244  DRPRVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R ++  +    +   EM + F    +A+  + EIA R    L +     P F   E   
Sbjct: 238  KRMKMEGNQLFVRTPEEMYAAFEGFEDAVARSQEIADRVDIDLDLKTRHFPVFTTPEN-- 295

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              K + + LR     GL+ R  +  I      Q++R RL FEL+VI +M +  YFLIV D
Sbjct: 296  --KRDIDYLRELCEEGLKWRYGEENI-----RQEHRDRLAFELSVIEKMGYPSYFLIVWD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            F+++A +  IP    RGS  G++ AY L ++ + P+++ LLFERFL+P R   PD DIDF
Sbjct: 349  FVRFAIEKGIPAS-ARGSACGALVAYVLGLSHVCPIKYDLLFERFLDPSRTEPPDIDIDF 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C+DRR +VI Y + KYG   V+QI TFG+L+AKAA+RDVGR L +P  +VD + KL+P +
Sbjct: 408  CRDRRQDVIDYTKAKYGEANVSQIGTFGTLKAKAAIRDVGRVLAVPLKRVDEIAKLVPEE 467

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+   S  + A   DP +  L + + +LEGL R A THAAG+V+ DRP+S  
Sbjct: 468  LGIELK-EALEKSSDLKAAYDTDPQIRELFDYAIQLEGLARSAGTHAAGVVVSDRPISDY 526

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            VP+         VTQ+    +EKAGL+K DFLGL+ LT+L K++  +A  RGV +D   +
Sbjct: 527  VPLQTISGKTDLVTQWEGPTVEKAGLLKMDFLGLRNLTILDKAVKNVALHRGVTIDPVKL 586

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
            P DD ETY LL    T GIFQLES GMR  L  M+PD   DIIA  +LYRPGP++  +V 
Sbjct: 587  PLDDKETYALLQRGETKGIFQLESGGMRDLLTKMKPDSFNDIIATSALYRPGPLEGGMVM 646

Query: 661  -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y   K+ +  +  +HP++D +L ET GV++YQEQVM+I   L G  L ++    +A+ K
Sbjct: 647  TYVEVKHKRAPLPRVHPIMDTILDETYGVMVYQEQVMRILNRLGGIELPQSYQCIKAISK 706

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  E + K K +F+ G+ KNG+ +  A  +FE++ KFA YGFNKSH+ AYA ++YQTA++
Sbjct: 707  KKLETIAKYKAQFVEGSQKNGLPEAKATELFEMIEKFAGYGFNKSHSTAYAAVAYQTAFL 766

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYS 838
            K HYP EF+AA ++ EM++ ++I +   D R+ NI+I+PP +N   V+F V G  ++ + 
Sbjct: 767  KAHYPAEFMAALLSCEMEDTDRINEHIDDCRRMNIEIVPPDINHCDVEFTVRGPRQVAFG 826

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKGVG  T + I+EA     PF S+ D C RVD+K L++  LE LV AGALD     
Sbjct: 827  LGAIKGVGEATTQAIVEARQLKGPFTSIFDLCERVDAKSLSKGSLEILVKAGALDSISPK 886

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----KITLEKFSVENSSVRF 952
            R      ++   + AQ ++K++    +N+F  ++            TL      +   + 
Sbjct: 887  RASQFACIERAVQAAQSLQKDKARGQKNLFGGDEADSQPGESTSSATLPDVPEWSHREKL 946

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK- 1011
              E+ VLGFY + HPL      + +       +      G  + L  MV S ++  T+K 
Sbjct: 947  AYEREVLGFYLTSHPLTEQAETIGRYTSYQAMQLAELEDGVEVMLGGMVSSIKKATTKKP 1006

Query: 1012 ---G-SRIGWVTFSEPAKEYEANFFP 1033
               G SR       +P        +P
Sbjct: 1007 SRNGHSRYVNFDLEDPTGVVRCIMWP 1032


>gi|34496366|ref|NP_900581.1| DNA-directed DNA polymerase III subunit alpha [Chromobacterium
            violaceum ATCC 12472]
 gi|34102219|gb|AAQ58585.1| DNA-directed DNA polymerase III, alpha subunit [Chromobacterium
            violaceum ATCC 12472]
          Length = 1144

 Score = 1016 bits (2626), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1038 (37%), Positives = 580/1038 (55%), Gaps = 33/1038 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P FVHL++HS +S+ +G + L++ + + A +Q PA+ ++D  NLF  ++F +     G
Sbjct: 2    NAPRFVHLRLHSEFSITDGIVRLDDAVKRAAKEQMPALGVSDLMNLFGMVKFYKSCRNKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+   + ++ +++                ++L     EGY+RL EL++  +  +Q +
Sbjct: 62   IKPIVSADIWLENEED----------RDKPYRLMLTAKNREGYRRLCELLTEAFSHNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL       L+ L+G   G +  A        A +R   ++ LF    Y+ +
Sbjct: 112  GRAEIKRAWLASGDNSNLLCLSGAHLGDVGIALSMGQRDEARRRAEYWESLFPGAFYLEI 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR             + LA    LP+VAT+   F+ +ED++AH+  + +A    +  K R
Sbjct: 172  QRVDSAQVENVVQATLWLAGETGLPVVATHPIQFMEKEDFKAHEARVCIAEGYTLGDKRR 231

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +   Y  +  +MV  F+D+PEAL NTVEIA+RC+  + +    LP F   +   + 
Sbjct: 232  PRSFSECQYFLSAEQMVERFADIPEALANTVEIAKRCNISVVLGKNYLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L ++A  GLE RL Q       +     DY  RL FE + I +M F GYFLIVA
Sbjct: 291  ---DDFLVHEAKRGLEERLKQLYPDEAERQEKRPDYDARLKFECDTIIQMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQW K N  PVGPGRGSGAGS+ AY+L+ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 348  DFIQWGKANGCPVGPGRGSGAGSLVAYSLSITDLDPLKYALLFERFLNPERVSMPDFDVD 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ+ R  VI Y + KYG E V+QI TFG++ +K+ +RDVGR L +P+   DRL KLIP 
Sbjct: 408  FCQENRWRVIEYTRRKYGEEAVSQIATFGTMSSKSVIRDVGRVLDLPFGLCDRLSKLIPL 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+SL +A+  + +  E   +      L+E++  LE L R    HA G++I    L+
Sbjct: 468  EANKPLSLEKAMQVEPQIGEIIES-EGAQELIELAMTLEDLTRGIGMHAGGVLIAPGRLT 526

Query: 541  QLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
               P+Y        PV+QF+   +E+ GL+KFDFLGL+ LT+++ +  ++    G  VD+
Sbjct: 527  DFCPLYIASGDGASPVSQFDKDDVEQIGLVKFDFLGLRNLTIIELAQKYIKDLTGEDVDV 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD   Y +  T  T  +FQ ES+GM++ L   +P   E+IIA V+LYRPGP+D I
Sbjct: 587  AHLPLDDKPAYKVFATANTTAVFQFESTGMKKMLVEAKPSKFEEIIAFVALYRPGPMDLI 646

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  R +G  K   +HPL++P+L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMG
Sbjct: 647  PDFIQRMHG-AKFEYLHPLLEPVLAPTYGIMVYQEQVMQSAQVIGGYSLGGADLLRRAMG 705

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM  Q+  F+ GA+K  I +  A  IF+ + KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 706  KKKVEEMVAQRAMFVQGAAKQDIPEAKANEIFDYMEKFAGYGFNKSHAAAYALVAYHTAW 765

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ--FNIQIMPPSVNTPCVDF-KVGDNRI 835
            +K H+   ++AA+M+ E+DN +++K F  D +     +  +PP VN     F  V    I
Sbjct: 766  LKAHHCAAYMAATMSTELDNTDQLKVFYDDCQDPKNGVTFLPPDVNHGFYRFVPVSRKEI 825

Query: 836  YYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y+L AIKG G +   HI+E   A  PF  L DFC R D K +N+RV+E+L+ AGA D  
Sbjct: 826  RYALGAIKGTGESAVNHIVEVREAGGPFTDLFDFCKRTDKKLVNKRVIEALIRAGAFDAI 885

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R  L  ++    + A+    N       +F       +  + +      + +V+   
Sbjct: 886  EPNRALLFANVGLAMEAAEQAHANAN--QGGLFDMFGDDVAPAVEMAATRPWSDAVKLAE 943

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  +GFY S HP   Y+  +R            T R     LA  V   + K   +G  
Sbjct: 944  EKLAIGFYLSDHPFSAYEKEVRGFIKTTLSRL--TPRKEPQLLAGFVTGIRVKVGNRGK- 1000

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + +V   +   + E + F
Sbjct: 1001 MAFVQLDDGTAKLEVSLF 1018


>gi|71900814|ref|ZP_00682933.1| DNA polymerase III alpha subunit [Xylella fastidiosa Ann-1]
 gi|71729435|gb|EAO31547.1| DNA polymerase III alpha subunit [Xylella fastidiosa Ann-1]
          Length = 1193

 Score = 1016 bits (2626), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1078 (38%), Positives = 623/1078 (57%), Gaps = 74/1078 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             + SFVHL +H+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  L I              P      + LL     GY  L
Sbjct: 62   FALIKFYKAAETVGIKPISGADLLIA------------EPEHPPWGMTLLCRDHAGYLNL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
             +L+SR +L     +  V +   W+++   + L  L G  S    + F    + +AE++L
Sbjct: 110  SQLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIGRHSLA-GQLFAKGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R         +Q  +Q+A    +P++A+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + +A   ++    RPR  +   YL++  EM ++F+D+P+AL+NT  +A+RC+  +++  
Sbjct: 228  RVCIASGRMLDDPKRPRTYSEQQYLRSSEEMATLFADIPDALDNTRTLAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +     + +    ++ +R ++  GLE RL +  +A G   +DY  RL+FEL+ I 
Sbjct: 288  YFLPNYPVPNDETL----DSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M FSGYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC +RRDEVI YV  KYG ERV+QIIT+G++ AKA +RDVGR L  PY
Sbjct: 404  PERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADD------SRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIP+     +       +      +   +   A+  V  LL ++++LE L R
Sbjct: 464  GLVDSVAKLIPSTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PL++  P++ +   +     PVTQF+   +E+ GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRGV-----KVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  + +R        VD++ +P DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINKRHARACIDPVDITALPLDDLPTYKDIFASGNTSAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +  RK+G ++ +   P    +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+    A  IF+L+
Sbjct: 704  QVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  +AR  N
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLN 823

Query: 814  IQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
            ++++ P++N     F+        Y L AIKGVG +    I++      P+ SL DFC+R
Sbjct: 824  LKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930
            V S KLNRR LE+++ AGALD  G +R  ++  L  + K  + + + R +   ++F + +
Sbjct: 884  VTSAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNAD 943

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE----- 985
             GT + ++ L +      +     E+  LG YFSGHP D Y+  ++++            
Sbjct: 944  PGTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALER 1003

Query: 986  -SVATIRGN----------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +  RGN          N  LA +VVS ++    KG    +V   +     E + F
Sbjct: 1004 ILSSQQRGNGEKRTWQPEVNTILAGLVVSVRR----KGDSQVFVQLEDGRGRIECSAF 1057


>gi|206895524|ref|YP_002247456.1| DNA polymerase III subunit alpha [Coprothermobacter proteolyticus DSM
            5265]
 gi|206738141|gb|ACI17219.1| DNA polymerase III subunit alpha [Coprothermobacter proteolyticus DSM
            5265]
          Length = 1128

 Score = 1015 bits (2625), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1034 (38%), Positives = 585/1034 (56%), Gaps = 56/1034 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS+YSLL+G      ++ +      PAIAITD    +  +EF  +A   GI+PI
Sbjct: 5    FVHLHVHSAYSLLDGVTLPKKLVQRAKDLGMPAIAITDHGVTYGLVEFVSEAQRLGIKPI 64

Query: 71   IGCQLDIDMQDNLKMT-NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +G +     +D  K   N+ K PF     +VLLV  A G++ L  L+++ YL        
Sbjct: 65   VGVEGYQAQRDRKKREGNKDKEPF----HLVLLVKNALGFRNLNILLTKAYLEG-FYYRP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R     L++   EGLI  +   +G I RA      + A +    ++ +F     Y+ +  
Sbjct: 120  RFDWELLEQYH-EGLIASSACLAGAIPRALLEGDEKKALELAGRYQDIFGKGNFYLEIMD 178

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+ R    +V+L+    +PL+ TN+  +   E+Y   DVLMA+A    ++  +R +
Sbjct: 179  HNLADQQRVNKAIVELSKRTGIPLLVTNDVHYGRPEEYSIQDVLMAIATGATLNDPNRFK 238

Query: 248  VTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D   LK+  EM   FS+ PEAL N++ IA    F+L +    LP+F   E       
Sbjct: 239  YETDQMYLKSADEMWERFSETPEALLNSLAIAEMVDFMLPLGEQHLPKFSVPEG----YT 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E + LR     GL  R           +++   R+++EL+VI +M F+GYFLIV D+I W
Sbjct: 295  ENSYLRKLTQDGLLKRYGDNP------SKEVLDRMEYELSVIEKMGFAGYFLIVQDYINW 348

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGS AGS+ AY   ITD+DPL++ LLFERFLNP+R+SMPD D+DFC  R
Sbjct: 349  AKSQGIPVGPGRGSAAGSLVAYLTGITDVDPLQYGLLFERFLNPERISMPDIDVDFCARR 408

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEV+RYV+NKYG E VAQI TFG+L A+AA+RDVGR L +P + VDRL K IP +    
Sbjct: 409  RDEVLRYVRNKYGEENVAQIATFGTLAARAAIRDVGRVLGVPLALVDRLSKSIPQN---- 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            + L         +     +P + R+LEI++++EGL RHASTHAAG+VI D+PL + V + 
Sbjct: 465  MELAHAEKLDDVKNLISQNPDLARVLEIAKQVEGLPRHASTHAAGVVIADKPLYEYVALQ 524

Query: 547  RDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
                       TQ     +EK GL+K DFLGL+ +T++  +L ++ +R  + VDL+ +  
Sbjct: 525  ASSDEAGINVTTQLAKDDVEKLGLLKMDFLGLRNMTVISDALRWIKERYGIDVDLNKLSK 584

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD + Y +L+   T+ +FQLESSG R  L+ ++P   E+IIA  +LYRPG + +  V  Y
Sbjct: 585  DDSKVYEMLSAGETVAVFQLESSGFRSFLKDLKPTRFEEIIAAEALYRPGTLGSGGVKSY 644

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             +RK+G+E +   H  + P+L+ET G+I+YQEQ+MQIA +++GYSL EADVLRRA+ KK 
Sbjct: 645  VDRKHGREPVDYFHDDLKPILEETYGIIVYQEQIMQIASVIAGYSLGEADVLRRAISKKK 704

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EE+ K +E F+S   + G ++     I+E +  FA+YGFNKSH+AAYA ++Y TAW+K+
Sbjct: 705  EEEILKLREDFVSRGVQRGYARETVEKIYETIVHFAEYGFNKSHSAAYAHVTYYTAWLKS 764

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYYSLA 840
            +YP E+ AA +   +DN EK+K +  +AR+  I+I+PP VN     F   G+N I + L 
Sbjct: 765  YYPTEYFAALLASFVDNTEKLKVYISEARRLGIKILPPDVNKSEHYFIPEGENEIRFGLL 824

Query: 841  AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK VG      I++  A   PF S +DF  RV+ + +N++V ESL+ AGA D  G  R 
Sbjct: 825  GIKNVGLAAVEEILKTRATGGPFSSFQDFLLRVNDRVVNKKVTESLIRAGAFDSLG-DRK 883

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
             LL+ L                  + +F  E  T +D ++L+             E+  L
Sbjct: 884  SLLRQLSTGITT------------QTLFQIE-DTSNDDLSLDPMED---------EREYL 921

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G Y + HPL+ Y  IL    +    +SV  I G  +++   V S + +K+R  ++    T
Sbjct: 922  GLYITTHPLERYMAILSNQNLTAL-DSVGEIDG-LVQVGGFVSSTRVRKSRNNNQYMTFT 979

Query: 1020 FSEPAKEYEANFFP 1033
              +   + E    P
Sbjct: 980  LEDLTSQVEVTVLP 993


>gi|260753893|ref|YP_003226786.1| DNA polymerase III subunit alpha [Zymomonas mobilis subsp. mobilis
            NCIMB 11163]
 gi|258553256|gb|ACV76202.1| DNA polymerase III, alpha subunit [Zymomonas mobilis subsp. mobilis
            NCIMB 11163]
          Length = 1174

 Score = 1015 bits (2625), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/1047 (44%), Positives = 639/1047 (61%), Gaps = 32/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FV L++ S +++LEGA+   +I         PA  I D N L+  + FS     
Sbjct: 1    MPYTP-FVPLRIFSGFTMLEGAIEPKDITQHAKKMGFPAAGICDRNGLYGVMTFSDSGKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPIIG  L +          +       +  + L     +GY  L  LVS  +L   
Sbjct: 60   DGVQPIIGSLLAVA---RPLRGGEASGQELKIDWLPLYAQDEDGYNNLCALVSHAHLGRP 116

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    + + +L E  ++GL+ LTGG  G + R         AE  L   +K+F DRLY+
Sbjct: 117  LELPPHVSMEFL-EQHSQGLLALTGGKEGALARLLAEEQQSEAEAYLTLLQKIFPDRLYI 175

Query: 185  NLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R          + ++ LAY  ++PLVATN   FL  + + AHD ++ +A S  V   
Sbjct: 176  ELSRRSEEIEEAAEEGLIDLAYDRDIPLVATNPVCFLEADFHPAHDAMLCIADSAYVDSP 235

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR   +P+ ++K+  EM  +F D+PEA++N++ IA+RC+    V  PILP          
Sbjct: 236  DRRHSSPEAWMKSGEEMARLFEDIPEAIQNSLVIAQRCAVAAPVRKPILPSLAGD----- 290

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ E   LR  A AGLE RLA          + Y +RL +ELN+I  M F GYFLIVADF
Sbjct: 291  REGETLMLRKDAWAGLEARLAAMTTP--VDRKAYEERLQYELNIIENMGFPGYFLIVADF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N IPVGPGRGSGAGSV A+ALTIT++DPLR  LLFERFLNP+R+SMPDFDIDFC
Sbjct: 349  IKWAKSNQIPVGPGRGSGAGSVVAWALTITNLDPLRLGLLFERFLNPERVSMPDFDIDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RR EVI YVQ+KYG + VAQIITFG ++A+A L+D GR LQM Y QVDRL KL+P+  
Sbjct: 409  ETRRSEVISYVQHKYGLDHVAQIITFGRMKARAVLKDTGRVLQMSYGQVDRLAKLVPSQA 468

Query: 484  AHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            + P +L  A+        A   +  V RLL+++ KLEGL RH+STHAAG+VIGDRPL QL
Sbjct: 469  SDPWTLDRALNGVPEIASAYENEEDVHRLLDLAMKLEGLPRHSSTHAAGVVIGDRPLHQL 528

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD RSD PVTQF+MK++EK GL+KFDFLGLKTL++L K++  L  RGV+VDL  IP
Sbjct: 529  VPLYRDPRSDFPVTQFDMKYVEKTGLVKFDFLGLKTLSVLNKAVQMLKARGVEVDLDHIP 588

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD   + LL    T+G+FQLES GMR+ L  ++P   EDIIALV+LYRPGP+DNI  + 
Sbjct: 589  LDDEAVFELLKQGDTVGVFQLESEGMRRTLAAVKPTRFEDIIALVALYRPGPMDNIPSFG 648

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RKNG E+IV  HPL++P+LKET G+I+YQEQVMQ AQ+L+GYSL EAD+LRRAMGKKI+
Sbjct: 649  ARKNGGEEIVYPHPLLEPVLKETYGIIVYQEQVMQAAQVLAGYSLGEADLLRRAMGKKIQ 708

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EMD Q+ RF+ G+ K+ I++  A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K H
Sbjct: 709  SEMDAQRSRFVEGSKKHDITENQANQLFDLIDKFAGYGFNKSHAAAYALVAYQTAWLKAH 768

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            Y  EF AA+M  +M   +K++ F  D R+  ++ +PP +N    DF V D  + Y+L A+
Sbjct: 769  YRAEFYAAAMCFDMALTDKLQVFVDDMRRSGLRYLPPDINRSQSDFTVEDGCVRYALGAL 828

Query: 843  KGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGVG      I  E   +  F SL+DF +R++ + LNRR LESL  AGA D  G  R  +
Sbjct: 829  KGVGEKAMDDICQEREKNGAFKSLDDFANRINPEHLNRRQLESLASAGAFDSLGVDRCAV 888

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             QS + I   A  + + R +    +F  E+      I L +  + + + R   E+   GF
Sbjct: 889  KQSSEMIIGTAANIHRMRKSGQGGLFGMEEMAM-PSIKLPEDKIWSLTERMNAEKEAFGF 947

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATI--------------RGNNI--RLAAMVVSKQ 1005
            +FS HP+D Y+ +L  + I+   +                   R   I  ++AAM+   +
Sbjct: 948  FFSSHPIDNYRSLLSGLRIRSRADINRLAPPSYPQDDENPQDYRKKRIATQMAAMIEDVR 1007

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + + +G R   V  S+ + ++ A+ F
Sbjct: 1008 WRDSARGRRYMMVAASDASGQFFASCF 1034


>gi|154509031|ref|ZP_02044673.1| hypothetical protein ACTODO_01548 [Actinomyces odontolyticus ATCC
            17982]
 gi|153798665|gb|EDN81085.1| hypothetical protein ACTODO_01548 [Actinomyces odontolyticus ATCC
            17982]
          Length = 1180

 Score = 1015 bits (2625), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1067 (33%), Positives = 556/1067 (52%), Gaps = 52/1067 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL  HS YS+L+GA     + ++ A   QPAI +TD   LF A +F      AG+
Sbjct: 2    ADSFVHLHNHSEYSMLDGAAKTKAMAEEAARLGQPAIGLTDHGYLFGAFDFYTNCKNAGV 61

Query: 68   QPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            +PIIG +  +                        +   +   + L+     G   L  L 
Sbjct: 62   KPIIGLEAYVTPGTSRFDRQKVLWGEPWQRADDVSAGGSYNHLTLVAYNTTGMHNLFRLG 121

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S      Q  +  R     L +   EGLI+ TG  SG +           A       + 
Sbjct: 122  SYASTDGQFGKWPRADKELLSQFH-EGLIVFTGCPSGAVQTRLRLGQWDEAVAEAAELRD 180

Query: 177  LF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            +F  +  YV +  H    +R    QV+++A     PLVATN++ ++  ED +  D L+ +
Sbjct: 181  IFGAENFYVEVMDHGIDIERRTHQQVLEIAKLMNAPLVATNDAHYVKREDRKIQDALLCI 240

Query: 235  AHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAP 290
               + ++  DR +   D +Y+++  EM +++S+LP A ++T+EIA RC       +  A 
Sbjct: 241  NSGSRINDPDRFKFDGDGYYIRSSDEMRALWSELPGACDSTLEIAERCDVHFTTTKEGAN 300

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             +P F   E +D    + +    +   GL  R   G         D R++  +E +VI +
Sbjct: 301  YMPDFPVPEGED----KTSWFIKEVERGLRDRFPNGI------PDDVRKQAQYEEDVIIK 350

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F GYFL VAD+I WAK   I VGPGRGSGAGS+ AYAL IT+++PL   L+FERFLNP
Sbjct: 351  MGFPGYFLTVADYINWAKSQGIRVGPGRGSGAGSMVAYALKITELNPLEHGLIFERFLNP 410

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFD+DF + RRDEVI YV+ KYG +R++Q++T+G+++ K AL+D  R L   + 
Sbjct: 411  ERISMPDFDVDFDERRRDEVIAYVKRKYGEDRISQVVTYGTIKTKQALKDSARILGKDFK 470

Query: 471  QVDRLCKLIPN-DPAHPVSLQAIADD--------SRFREARLADPSVDRLLEISQKLEGL 521
              ++L K +P       +++  I D+        S FR+    +P    +++ +  LEGL
Sbjct: 471  VGEQLTKALPPAIMGKDITVHGIFDEKDKRYAEASEFRKFYEENPDTHEVVQYALGLEGL 530

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HA  +++    L+ ++P+ +  +    +TQF+    E  GL+K DFLGL+ LT+
Sbjct: 531  TRQWGVHACAVIMSSHTLTDIIPIMKRPQDGAIITQFDYPTCETLGLLKMDFLGLRNLTV 590

Query: 582  LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +L+ +A       DL  + FDD +TY LL    TLG+FQL+  GMR  L+ M+PD  
Sbjct: 591  VSDALENIALNGKPDPDLDHLTFDDKKTYELLGRGDTLGVFQLDGGGMRDLLKLMKPDNF 650

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQEQ 694
            EDI A+ +LYRPGP+  ++   Y  RKNG+++I  IHP +    + +L  T G+I+YQEQ
Sbjct: 651  EDISAVGALYRPGPMGANSHTNYALRKNGRQEITPIHPELAEPLEDILGTTFGLIVYQEQ 710

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VMQIAQ L+GYSL +AD+LR+AMGKK KE +D+Q + F  G   NG S+     +++++ 
Sbjct: 711  VMQIAQKLAGYSLGQADILRKAMGKKKKEVLDQQFKGFRQGMVANGYSEESIKALWDVVV 770

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+ Y FNK+H+AAY ++SY TA++K ++P E++AA +T   DN ++   +  + R  +I
Sbjct: 771  PFSAYAFNKAHSAAYGLVSYWTAFLKANFPTEYMAALLTSTKDNKDRRALYLAECRHMDI 830

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873
             ++PP VN    +F      I + L AI+ VG      I+E  A+   F S +DF  +V 
Sbjct: 831  TVLPPDVNASMGNFAPDGEAIRFGLNAIQNVGGPVVDAIVETRAEKGRFASFQDFLDKVP 890

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
                N+R ++SL+ AGA D  G++R  LL   D        V++N      ++F      
Sbjct: 891  QVVCNKRTIQSLIRAGAFDSMGHTRRALLARCDEAVDAIIDVKRNEAIGQFDLFGALGED 950

Query: 934  FSD----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-- 987
                    I +      +   +   E+ +LG Y S HPL   +  L +       + V  
Sbjct: 951  EDTGSGLTIDIPDLPEFDRKTKLAAEREMLGLYVSDHPLRGVEAALARHQDYEIAQVVGS 1010

Query: 988  -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +    +++A ++     K T++G+     T  + +   +  FFP
Sbjct: 1011 DGAMADRIVKIAGLISGVTTKVTKQGNAWAIATIEDLSGSVDVLFFP 1057


>gi|223039577|ref|ZP_03609864.1| DNA polymerase III subunit alpha [Campylobacter rectus RM3267]
 gi|222879148|gb|EEF14242.1| DNA polymerase III subunit alpha [Campylobacter rectus RM3267]
          Length = 1328

 Score = 1015 bits (2625), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1062 (36%), Positives = 604/1062 (56%), Gaps = 45/1062 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F HL +H+ YSLL+GA  +  +   + +    A AITD  N+F A++F +    
Sbjct: 1    MSDFTDFTHLHLHTEYSLLDGANRIKELAKTLKSQGVKAAAITDHGNMFGAIDFYKTMKN 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+P+IG +  I   + L     G         + L+     GY+ L+ L S  Y+   
Sbjct: 61   EGIKPLIGIEAYIHNGEEL-----GDKSTKQRFHLCLIAKNEIGYKNLMYLSSMSYIEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR---------AFFFNSSQVAEKRLLTFK 175
                 RI    L+E  +EG+I  +    G ++           F     + A++  L +K
Sbjct: 115  FYYYPRINKKILKE-HSEGIICSSACLQGEVNWNLNQSERNLRFGAGGYEAAKEAALWYK 173

Query: 176  KLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
             +FGD  Y+ + RH   D+ R + ++++LA    + ++ATN++ +  ++   AH+V M +
Sbjct: 174  DVFGDDFYLEIMRHGIGDQRRIDDEILRLAKELNIKVIATNDTHYTFKQRAGAHEVFMCI 233

Query: 235  AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            A + ++   +R R +  + Y+K  ++M  +F+D+PEA+ NT EI  +C   +++     P
Sbjct: 234  AMNKLLDDPNRLRHSVHEFYVKTPAQMSELFADIPEAVTNTQEIVDKCDLTIKLGDATPP 293

Query: 294  RF--------------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
             F               E +       +     ++   GLE RL      +    ++YR 
Sbjct: 294  NFKFTLEYAAERNLSLPEPDKRYSIPNDSVLFEHECRQGLEDRLKFVPAERH---EEYRT 350

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL  E+++I +M F GY +IV DFI  AKK  +PVGPGRGS AGS+ AY+L ITD+DPL 
Sbjct: 351  RLQREIDIINKMNFPGYMMIVWDFINEAKKRGVPVGPGRGSAAGSLVAYSLKITDLDPLP 410

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            ++LLFERFLNP+R+SMPD D+DFCQ+RR E+I YV  KYG   VAQ+ITFG L AK  +R
Sbjct: 411  YNLLFERFLNPERVSMPDIDVDFCQNRRGEIIDYVIEKYGKFNVAQVITFGKLLAKGVIR 470

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            DV R   MPY++ D + KLI ++    +  QA   + +  E    + + +R+ + +  LE
Sbjct: 471  DVARVCDMPYAEADAMAKLILDEIGITLE-QAFEKEPKIGELIATNSNANRIWKFALDLE 529

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYR--DVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            GL R+A  HAAG+VI +  L    P++R  +   D  VTQ+++K++E   LIKFDFLGLK
Sbjct: 530  GLNRNAGMHAAGVVISNEELWNKTPLFRQPNAEEDHFVTQYSLKYLEDVDLIKFDFLGLK 589

Query: 578  TLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            TLT++  ++  + +R   ++    +  +D +TY  +++  TLG+FQ+ES GM++    M+
Sbjct: 590  TLTVIDNAVKLVKKRFGKEIIWEQVNKNDPKTYETISSGQTLGLFQIESEGMQKVGADMR 649

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            PDC EDIIA++SLYRPGP+D I  +  RK+G E I  I P ++P+L+ T GVI+YQEQVM
Sbjct: 650  PDCFEDIIAMISLYRPGPMDLIPDFIKRKHGLEPITYIFPELEPILEPTYGVIVYQEQVM 709

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            QI Q + G+SL  AD++RRAMGKKIKEEMD+ K +FI GA   G+    +  +FEL+  F
Sbjct: 710  QIVQTIGGFSLGGADLVRRAMGKKIKEEMDRLKGKFIEGAQAQGLDGKKSGELFELILHF 769

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A YGFNKSHAAAY  +++QTA++KT+YP EF+AA +T E  N +KI ++  + ++ +I I
Sbjct: 770  ASYGFNKSHAAAYTYVTFQTAYLKTYYPAEFMAALITSEETNADKISRYIDECKRLDIAI 829

Query: 817  MPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            +PPSVN    +F V    G + I Y L AIKGVG     +I+E  A   F  ++DF SRV
Sbjct: 830  LPPSVNKSAKEFSVVSEGGKDAIIYGLGAIKGVGGAAIENILEEQAKGEFKDIDDFVSRV 889

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D+ K+N++V ESL+ +G+ D FG +R  +L +LDNI +  +     + N  E++F  ++ 
Sbjct: 890  DNFKVNKKVFESLIKSGSFDSFGLTRKMMLNNLDNIVEACKNAATIKKNAAESLFGDDES 949

Query: 933  TFSDKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
              + K +L    S      + + E   +G Y SGHPLD Y+  + K+     ++      
Sbjct: 950  MATVKTSLVRDDSELELKTKLKFELESVGIYLSGHPLDEYREQISKIKYTLSDKFDELPE 1009

Query: 992  GNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
               + L   + +   + ++K G ++G +   +     E   F
Sbjct: 1010 NGEMLLVGKIENLTTRISKKNGKKMGTIEMLDLYGTVEIAVF 1051


>gi|241763389|ref|ZP_04761444.1| DNA polymerase III, alpha subunit [Acidovorax delafieldii 2AN]
 gi|241367431|gb|EER61742.1| DNA polymerase III, alpha subunit [Acidovorax delafieldii 2AN]
          Length = 1198

 Score = 1015 bits (2624), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1059 (38%), Positives = 596/1059 (56%), Gaps = 55/1059 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL++H+ +S+++G   ++++    A D QPA+AITD NNLF A++F ++A   G++
Sbjct: 16   PMFVHLRLHTEFSVVDGTNRIDDLAKAAAKDGQPALAITDLNNLFGAIKFYKEARGKGVK 75

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G ++ ++                    +++LV   +GY  L EL++R +  +  K  
Sbjct: 76   PILGAEIFLE-----------GEAGAAPSRMLVLVQGRQGYLNLSELLARAWTRNVVKAQ 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                  WLQE+G EGLI + G  +GP+ +A        A    L    +F  R Y+ +QR
Sbjct: 125  AICTWDWLQELG-EGLIAIAGAQAGPVGQALMKGDDAGAAALALRLAGIFPHRFYIEVQR 183

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
              R  D       VQLA    LP+VAT+   F + +DYEAH+  + +A   ++  + R  
Sbjct: 184  AGRADDEAHVVAAVQLAARLHLPVVATHPVQFATADDYEAHEARVCIAEGEILGNQRRVR 243

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + T + Y K+ ++M ++F+DLP AL N+VEIARRC+  L +  P LP F     +     
Sbjct: 244  KFTREQYFKSSAQMQALFADLPTALANSVEIARRCNITLVLGKPQLPNFPIPPVNGQVLS 303

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             ++  R+ +  GLE RL         +      Y +RL+FEL  I +M F GYFLIV DF
Sbjct: 304  VDDYFRHVSFEGLEERLRLLFPDEARRNVERPRYVERLEFELGTILKMGFPGYFLIVGDF 363

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK +  PVGPGRGSGAGS+ AYAL ITD+DPL ++LLFERFLNP+R+SMPDFDIDFC
Sbjct: 364  IQWAKTHGCPVGPGRGSGAGSLVAYALKITDLDPLEYNLLFERFLNPERVSMPDFDIDFC 423

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P
Sbjct: 424  QSNRDRVIDYVKEKYGKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKP 483

Query: 484  AHPVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
                +LQ              A+  +    E    +  V  ++E++QKLEG+ R+   HA
Sbjct: 484  GMSYTLQYPPEVKKDGDKNNYALELEPLLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHA 543

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F+
Sbjct: 544  GGVLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFI 603

Query: 590  AQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             +R    +      IP DD  TY L +   T  +FQ ES GM+  L   +P  +ED+IAL
Sbjct: 604  MKRHKGQENFAYENIPLDDGPTYRLFSEGKTEAVFQFESRGMQGMLREARPSRLEDLIAL 663

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
             +LYRPGP+D I  + NRK+GKE +   HPL++P+L ET G+++YQEQVMQ AQ+L GYS
Sbjct: 664  NALYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLSETYGIMVYQEQVMQTAQVLGGYS 723

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM + +  F  GA++ GIS+  A  +F+L+ KFA YGFNKSHA
Sbjct: 724  LGGADMLRRAMGKKKAEEMAEHRAIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHA 783

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPC 825
            AAY++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA + F +   PP VN   
Sbjct: 784  AAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAKKNFGLTFEPPDVNRGM 843

Query: 826  VDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDS 874
              F+   ++ I Y L A+KG G      I+ A              PF SL DFC RVD 
Sbjct: 844  YRFEPVTDKVIRYGLGAVKGTGQQAIEAIVAAREGRGEGPQGSTKGPFKSLFDFCVRVDR 903

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HE 930
             +LN+R +E+L+ AGA D    +R  ++ S+D    +A     N       +F       
Sbjct: 904  ARLNKRTVEALIKAGAFDALNLNRAAMVASIDRAFDFAAATLANVN--QGGLFDMMGEDA 961

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             G+ + +  L          R   E+  +GFY SGH  D     +R+      +E + + 
Sbjct: 962  HGSSTQEPDLVDAVPWGIKERLTQEKTAVGFYLSGHLFDEVAQEVRRFVRTQIDELLDSR 1021

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                  LA ++   +    ++G   G     + +   EA
Sbjct: 1022 EPQ--ILAGIISDFRVINGQRGKL-GLFRLDDKSGVIEA 1057


>gi|54023768|ref|YP_118010.1| DNA polymerase III subunit alpha [Nocardia farcinica IFM 10152]
 gi|54015276|dbj|BAD56646.1| putative DNA polymerase III alpha subunit [Nocardia farcinica IFM
            10152]
          Length = 1196

 Score = 1015 bits (2624), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1068 (31%), Positives = 543/1068 (50%), Gaps = 51/1068 (4%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              S SFVHL  H+ YS+L+GA  ++ +  +       A+ +TD  N++ A EF   A   
Sbjct: 17   ASSGSFVHLHNHTEYSMLDGAAKISPLFTEAKRLGMTAVGMTDHGNMYGASEFYNSAKKH 76

Query: 66   GIQPIIGCQLDIDMQDNLK----------MTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            G++PIIG +  I                       +       + ++   A G + L +L
Sbjct: 77   GLKPIIGIEAYIAPGSRFDTKRVQWGDPGQKGDDVSGSGAYTHMTMVAENATGLRNLFKL 136

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S   +  Q  +  R+    + +   EG+I  TG  SG +         + A +    ++
Sbjct: 137  SSLASIEGQLGKWARMDAEIIAQ-HAEGIIATTGCPSGEVQTRLRLGHEREALEAAAKWQ 195

Query: 176  KLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++F  D  ++ +  H    +R     ++ +     +P +ATN+  ++ E D   H+ L+ 
Sbjct: 196  EIFGPDNFFLEVMDHGLSIERRVREGLLDIGRKLGIPPLATNDCHYVYESDAANHEALLC 255

Query: 234  VAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFI--LQVHA 289
            V     +S   R +     +YLK+  EM +I+ +++P A +NT+ I  R      +  H 
Sbjct: 256  VQTGKTLSDPTRFKFDGSGYYLKSGDEMRAIWDAEVPGACDNTLLIGERVQSYDAVWEHR 315

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +P F   E +     + + L  + + GLE R   G        ++Y +R ++EL+VI 
Sbjct: 316  DRMPIFPVPEGE----TQASWLHKEVMRGLERRFPNGV------PEEYLRRAEYELDVIC 365

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M F  YFL+V D I  A++  I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLN
Sbjct: 366  EMGFPAYFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLN 425

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467
            P+R+SMPD DIDF   RR E++RY   K+G +RVAQ+ITFG+++ KAA++D  R    Q 
Sbjct: 426  PERVSMPDIDIDFDDRRRGEMVRYATEKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQP 485

Query: 468  PYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKL 518
             ++  D++ K +P    A  + L  I D            RE    +P V ++ E ++ L
Sbjct: 486  GFAIADQISKALPPPIMAKDIPLSGIMDPEHERYKEAAEVRELIANNPDVAKIYETARGL 545

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R+A  HA  +++   PL   +P+++  +    +T ++    E  GL+K DFLGL+ 
Sbjct: 546  EGLIRNAGVHACAVIMSSEPLMDAIPLWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRN 605

Query: 579  LTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  +LD +   RG+ +D+  +P DD  TY LL+   TLG+FQL+ S MR  L  MQP
Sbjct: 606  LTVIGDALDNIKANRGIDLDMDNLPLDDPATYELLSRGDTLGVFQLDGSAMRDLLRRMQP 665

Query: 638  DCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIY 691
               EDI+A+++LYRPGP+       Y +RKNG++++  IHP ++     +L +T G+I+Y
Sbjct: 666  TGFEDIVAVLALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKDILADTYGLIVY 725

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQ+MQIAQ ++GYSL  AD+LRRAMGKK  E ++ + E F +G  +NG SK     +++
Sbjct: 726  QEQIMQIAQKVAGYSLGRADILRRAMGKKKAEVLEAEFEGFEAGMLENGFSKPAIKALWD 785

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  FA Y FNKSHAA Y ++S+ TA++K +YP E++A  +T   D+ +K   +  D R+
Sbjct: 786  TILPFAGYAFNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLSDCRR 845

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCS 870
              I ++PP VN    +F      I + L A++ VG      I++A  +K  F    D+ +
Sbjct: 846  LGITVLPPDVNESEQNFASVGKDIRFGLGAVRNVGANVVASIIQARKEKSKFTDFSDYLN 905

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            ++D+    ++V ESL+ AGA D  G+ R  L+    +        +K       ++F   
Sbjct: 906  KIDAIACTKKVTESLIKAGAFDSLGHPRKGLMLIHSDAIDAVMATKKAEAIGQFDLFGGM 965

Query: 931  KGTFSDKITL---EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                S               +  +   E+ +LG Y SGHPL+  + +L           +
Sbjct: 966  DADESVTSVFNVKVPDEEWETKHKLALEREMLGLYVSGHPLNGVEHVLAAQADTQIPAIL 1025

Query: 988  A--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G  + +  ++ S  ++  + G         +     E  FFP
Sbjct: 1026 EGDVKDGAQVTIGGILASVNRRINKNGLAWASAQLEDLTGGIEVLFFP 1073


>gi|110636521|ref|YP_676728.1| DNA polymerase III subunit alpha [Cytophaga hutchinsonii ATCC 33406]
 gi|110279202|gb|ABG57388.1| DNA polymerase III, alpha subunit [Cytophaga hutchinsonii ATCC 33406]
          Length = 1194

 Score = 1015 bits (2624), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1078 (32%), Positives = 576/1078 (53%), Gaps = 67/1078 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VHS +SLL+GA S+  ++ K   ++  A+A+TD  N+    +F  +A    I+
Sbjct: 2    PDFAHLHVHSQFSLLDGAASIKGLVGKAVKNEMKALALTDHGNMHGIFQFVAEAVKNNIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+GC+  + ++D  K  N  K         +LL    EGY+ LI+L S  Y+  Q  + 
Sbjct: 62   PIVGCEFYL-VEDRFKK-NFTKDNKDVRYHQLLLAKNPEGYKNLIKLCSLGYIEGQYGKY 119

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    + +   +GLI  T      + R       +  EK    +  LFG+  YV LQR
Sbjct: 120  PRIDKELILQYH-KGLIATTCCLGAEVPRTILAKGEEAGEKAFKWWLDLFGEDYYVELQR 178

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++   ++ +++LA  +++P++A+N+S ++ ++D  AHD+L+ +      S      
Sbjct: 179  HDIKEQNIVNEVLIKLARKYQVPIIASNDSHYVDQKDSNAHDILLCINTGEKQSTPTMKD 238

Query: 248  VTPDH---------------YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             + D                Y K + EM ++FSD+PEA++NT++I  +   +      +L
Sbjct: 239  FSDDESMMKGRRFAFANDQFYFKTKEEMSTLFSDIPEAIDNTMQIVDKVEILKLKQDILL 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P +   E      +++N L++    G   R             + ++RLDFEL+ I  M 
Sbjct: 299  PNY---EIPSTFLDQDNYLQHLTYEGARNRYVD-------VTPEIKERLDFELHTIRTMG 348

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F+GYFLIV DFI   ++  + +GPGRGS AGS  AY + IT+IDP++++LLFERFLNPDR
Sbjct: 349  FAGYFLIVQDFINKGREIGVLIGPGRGSAAGSAVAYCIGITNIDPIKYNLLFERFLNPDR 408

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
             SMPD D DF  + R +VI YV  KYG ++VAQI+T+G++ AK +++DV R L +P  + 
Sbjct: 409  KSMPDIDTDFDDEGRQKVIDYVVEKYGKKQVAQIVTYGTMAAKMSIKDVARVLDLPLQES 468

Query: 473  DRLCKLIPNDPAHPVSL-------------------------QAIADDSRFREARLADPS 507
            + L KL+P+ P   ++                          + I +  + RE    + +
Sbjct: 469  NALAKLVPDKPGIELNWVMKGPMKASDKKNEKDKTLTEELTPEDIENVKKLREMLDDEGT 528

Query: 508  VD-RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
            +   +L+ +  LEG  R    HAAGI+I  + L  ++P++    S+L VTQF+ K IE A
Sbjct: 529  LASDVLKEALILEGSVRGTGIHAAGIIIAPKDLYDIIPVFTAKDSELLVTQFDGKVIEDA 588

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            G+IK DFLGLKTLT+++ +L  + +   +K+D+  IP DD +T+ L     T   FQ ES
Sbjct: 589  GVIKMDFLGLKTLTIIRDALKMIEENHGIKIDIDYIPLDDAKTFELYQKGETNATFQFES 648

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
            +GM++ L  ++PD  ED+IA+ +LYRPGPI+ I  +  RK GKE+IV   P ++  L +T
Sbjct: 649  AGMQKHLINLKPDKFEDLIAMNALYRPGPIEYIPKFIQRKLGKEEIVYDLPEMEEYLGDT 708

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+ +YQEQVM ++Q L+G++  +ADVLR+AMGKK +  +DK K +FI GA   G+   +
Sbjct: 709  YGITVYQEQVMLLSQKLAGFTKGDADVLRKAMGKKDRATLDKMKGKFIEGAVAKGLDPKV 768

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               ++     FA Y FNKSH+  YA ++YQT ++K +YP E++A+ +T  + N +KI  F
Sbjct: 769  CEKVWTDWEAFAQYAFNKSHSTCYAFVAYQTGYLKANYPSEYMASVLTHNLSNFDKISFF 828

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIM-EASADKPFD 863
             ++ ++  + ++ P VN     F V  N  I + + AIKGVG    + I+ E  A+ PF 
Sbjct: 829  MEECQRMGMAVLGPDVNESSYQFSVNSNGQIRFGMGAIKGVGEGPVQAIVDERKANGPFK 888

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS--------LDNIQKYAQW 914
               DF SRV+ + ++++  ESL  AGALD F    R Q            L+   +Y   
Sbjct: 889  DFFDFVSRVNLRAVSKKTFESLALAGALDYFTELHRAQYFNVAERETITFLEKAIRYGNA 948

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
             +    +   ++F            +       +  + + E+ ++GFY SGHPLD +K  
Sbjct: 949  FQTEDDSNQSSLFGDSSSAKPAPPKITPCEEWGNIEKLKKEKEIVGFYISGHPLDQFKLE 1008

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +        E  +++ +G ++ +A +V     ++++ G      T  + +   +   F
Sbjct: 1009 IDNFCNCPLENVMSSPQGKDLTVAGIVTKVNVRQSKNGKPFVLFTIEDYSGSLDLALF 1066


>gi|238028202|ref|YP_002912433.1| DNA polymerase III subunit alpha [Burkholderia glumae BGR1]
 gi|237877396|gb|ACR29729.1| DNA polymerase III, alpha subunit [Burkholderia glumae BGR1]
          Length = 1182

 Score = 1015 bits (2624), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1041 (39%), Positives = 598/1041 (57%), Gaps = 38/1041 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F ++A + GI+
Sbjct: 4    PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARSKGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC + I   D+     +          ++LLV    GY  L EL+S+ +L +Q +  
Sbjct: 64   PIAGCDVWITNHDDRDKPAR----------LLLLVRDKSGYLNLCELLSKAWLTNQYRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL+     GL+ L+G   G I  A    +++ A +    + ++F    Y+ LQR
Sbjct: 114  AEIDPQWLESELGGGLLALSGAQQGDIGIALAAGNNESARRHAQRWARVFPGSFYIELQR 173

Query: 189  HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
            +            V+LA   +LP+VAT+   F+ +ED+ AH+  + ++   +++   R  
Sbjct: 174  YGQPGAEAYIQDAVKLAAELKLPVVATHPLQFMEDEDFTAHEARVCISEGDILANPRRQK 233

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R T +   + ++EM  +F+DLP A+ NTVEIA+RC+  +++  P LP F   +   +   
Sbjct: 234  RFTTEQRFRTQAEMAELFADLPSAVLNTVEIAKRCNLTIELGKPKLPLFPTPDGMSL--- 290

Query: 307  EENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             ++ L   +  GLE RL         +      Y QRLDFE   I +M F GYFLIVADF
Sbjct: 291  -DDYLVQLSKEGLEKRLVQLYPDEAERDAQRDTYYQRLDFECGTITKMGFPGYFLIVADF 349

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDFC
Sbjct: 350  INWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFC 409

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP  P
Sbjct: 410  QHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKP 469

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+  
Sbjct: 470  GKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDF 529

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVDLS 599
             P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  F+ +         L+
Sbjct: 530  CPLYAQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERFIRRLDPTKADWSLA 589

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D I 
Sbjct: 590  QVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIP 649

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMGK
Sbjct: 650  SFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGK 709

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TAW+
Sbjct: 710  KKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWL 769

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI---- 835
            K H+P EF+AA+MTL MD+ +K+K    D     I+++PP +N     F+          
Sbjct: 770  KAHHPAEFMAANMTLAMDDTDKVKILFDDCVLNGIKVLPPDINQSEYRFEPVGEADGKRS 829

Query: 836  ---YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
                Y L A+KG G      I+ A  +  PF  L DFC R+D + +NRR +E+L+ AGA 
Sbjct: 830  KTIRYGLGAVKGSGQNAIEEILRARREGGPFKDLFDFCERIDRRMVNRRTVEALIRAGAF 889

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QLL S+          +         +F            L      +   R
Sbjct: 890  DSLTPNRAQLLASVP--LAMEAAEQAAANAMQAGLF-DMGAESPHAHALVDEPAWDDKRR 946

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
             + E+  LGFY SGH  D Y+  +R+       E      G +  +A ++ S + + T++
Sbjct: 947  LQEEKGALGFYLSGHLFDAYRAEVRRFARMKLGEL---KEGRDKLVAGVIASLRTQMTQR 1003

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G  +      +   + E   F
Sbjct: 1004 GK-MIIALLDDGTGQCEITVF 1023


>gi|121600233|ref|YP_992382.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia mallei SAVP1]
 gi|121229043|gb|ABM51561.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia mallei SAVP1]
          Length = 1686

 Score = 1015 bits (2624), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1042 (39%), Positives = 605/1042 (58%), Gaps = 37/1042 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AG
Sbjct: 514  SDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAG 573

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 574  IKPIAGCDVWITNHDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 623

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ L
Sbjct: 624  GRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIEL 683

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R
Sbjct: 684  QRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRR 743

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   + 
Sbjct: 744  QKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL- 802

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ RL         +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 803  ---DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVA 859

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 860  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 919

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 920  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 979

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 980  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 1039

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 1040 DFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 1099

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 1100 LAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 1159

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 1160 IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 1219

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 1220 GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA 1279

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+        
Sbjct: 1280 WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNDRFEPVAEADGK 1339

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                  Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA
Sbjct: 1340 RSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGA 1399

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R QLL S+    + A+    N       +F    G  + +  L      +   
Sbjct: 1400 FDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKR 1456

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R + E+  LGFY SGH  D Y+  +R+   +   E      G +  +A ++ S + + T+
Sbjct: 1457 RLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQ 1513

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +      +   + E   F
Sbjct: 1514 RGK-MVIALLDDGTGQCEVTVF 1534


>gi|103486667|ref|YP_616228.1| DNA polymerase III, alpha subunit [Sphingopyxis alaskensis RB2256]
 gi|98976744|gb|ABF52895.1| DNA polymerase III, alpha subunit [Sphingopyxis alaskensis RB2256]
          Length = 1162

 Score = 1015 bits (2624), Expect = 0.0,   Method: Composition-based stats.
 Identities = 472/1041 (45%), Positives = 641/1041 (61%), Gaps = 26/1041 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP FV L+V SSY++LEGA+    I         PAIA+ D N L+  + F +   A
Sbjct: 1    MAFSP-FVPLRVFSSYTMLEGAIEPKAIAKAARDRGFPAIAVADRNGLYGVMAFGEACQA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+G  L +      +   +     P +  + L    A GY  L  LVS  +L   
Sbjct: 60   AGVQPIVGALLSVA-----RPGQRLANGAPLIDWLALYAQDARGYHNLCALVSAAHLGRP 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +Q   + LS +    T+GLI LTGG  G + R         AE  +   + LFG+RLY+
Sbjct: 115  VEQEPHVALSDMT-GRTDGLICLTGGGEGALARLLAGEQQSAAEDYMEQLEALFGERLYI 173

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +   E+ ++ +AY   LPLVATN + F+  + + AHD ++ +A S  V  +
Sbjct: 174  ELSRRGDATEAAAENALIDMAYARALPLVATNPANFVEPQFHAAHDAMLCIAQSAYVESE 233

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR    P+ +LK    M   FSDLPEA+ NT+ IA+RC+F+     PILP          
Sbjct: 234  DRRVSNPEAWLKPAEAMEDAFSDLPEAIRNTLVIAQRCAFMAPKRKPILPSLAGD----- 288

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ E  +L+  A AGL+ RLA          Q Y +RLD+E++VI +M F GYFLIVADF
Sbjct: 289  REGEAAQLKADAHAGLDARLAHYPDLTDEERQAYVERLDYEIDVITQMGFPGYFLIVADF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK  +IPVGPGRGSGAGSV A+ALTITD+DPL+  LLFERFLNP+R+SMPDFDIDFC
Sbjct: 349  IKWAKAQDIPVGPGRGSGAGSVVAWALTITDLDPLKLGLLFERFLNPERVSMPDFDIDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RR EVIRYVQ KYG + VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P
Sbjct: 409  ETRRGEVIRYVQEKYGRDTVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHP 468

Query: 484  AHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              P +L+ A+   S        D  V RL +++++LEGL RH+STHAAG+VIGDRPL QL
Sbjct: 469  TDPWTLERALNGVSELMTEYKQDDGVRRLFDMARQLEGLPRHSSTHAAGVVIGDRPLDQL 528

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD RSD+PVTQF+MK++E AGL+KFDFLGLKTL++L+++   LA RG+ VDL  + 
Sbjct: 529  VPLYRDPRSDMPVTQFDMKYVETAGLVKFDFLGLKTLSVLKEARRLLALRGIDVDLDTLR 588

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +DD + Y LL    T+G+FQLES GMR+ L  ++P    DIIALV+LYRPGP+DNI ++ 
Sbjct: 589  WDDAQVYELLQRGDTVGVFQLESEGMRRTLSAVKPTSFGDIIALVALYRPGPMDNIPLFG 648

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RKNG+E I   HPL++ +L ET G+ +YQEQVMQ AQ+L+GYSL  AD+LRRAMGKKI+
Sbjct: 649  ARKNGREPIAYPHPLLEGILAETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKIQ 708

Query: 723  EEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             EMD Q+E F+ G  + N I    A  +F+L+ KFA YGFNKSHAAAYA++SYQTAW+K 
Sbjct: 709  AEMDAQRETFVKGCGEHNQIDAKTANELFDLIDKFAGYGFNKSHAAAYALLSYQTAWLKA 768

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----RIYY 837
            H+P EF AASM+ +    +K+  F  D R+  I I PPS+N    DF VG       + Y
Sbjct: 769  HHPHEFFAASMSFDSHQTDKLSVFIDDMRRLGIDIAPPSINESEADFSVGRTDDGLAVRY 828

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            +L A+KGVG      ++    A   F SL+DF SR+D K LNRR +E+L  AGA DC   
Sbjct: 829  ALGALKGVGEKAMEALVAERQARGDFASLDDFASRIDPKLLNRRQIEALAGAGAFDCVEP 888

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R +     + +   A      R+     +F  +    +  + L        + R   E+
Sbjct: 889  DRPRAFAGAEALLACANSSAHERSTGQGGLFGGDIA-IAPTLQLPAAEPWTLAERMTREK 947

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR---GNNI--RLAAMVVSKQQKKTRK 1011
               GFYFS HP++ Y+ IL   G + Y +    +    G  I   +AAMV S + + +++
Sbjct: 948  EAFGFYFSAHPVEQYEAILSARGARSYGDICENVEMTPGTRIPMVMAAMVESARARVSQR 1007

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G+R   +T S+ + +++++ F
Sbjct: 1008 GNRFLNLTLSDRSGQFQSSCF 1028


>gi|148242424|ref|YP_001227581.1| DNA polymerase III subunit alpha [Synechococcus sp. RCC307]
 gi|147850734|emb|CAK28228.1| DNA polymerase III alpha subunit [Synechococcus sp. RCC307]
          Length = 1179

 Score = 1015 bits (2624), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1059 (36%), Positives = 578/1059 (54%), Gaps = 41/1059 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFV L  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +    
Sbjct: 1    MVAGLSFVPLHNHSDYSLLDGATQLPAMVQRAVDLGMPAVALTDHGVMYGAIELLKLCSK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG ++ +          + +  +     +V+L     GY+ L++L S  +L   
Sbjct: 61   AGIKPIIGNEMYVVNGSIDDPQPKKERRY----HLVVLAKNNVGYRNLVKLTSISHLRGM 116

Query: 125  GKQS--VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
              +    R C+   L +  +EGLI+ T    G I +A       VA +    ++ L GD 
Sbjct: 117  RGRGIFARACIDKHLLQQYSEGLIVATACLGGEIPQAILRGRMDVARQVASWYRDLLGDD 176

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ +Q H    DR   + ++ L+    + L+ATN++ +LS +D EAHD L+ V    ++
Sbjct: 177  FYLEIQDHGSPEDRIVNTGLLTLSRELGIQLIATNDAHYLSRDDVEAHDALLCVLTGKLL 236

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPR 294
            S + R R T   Y+K+R EM  +F D        +AL+NT+ +A +      +    +PR
Sbjct: 237  SDEKRLRYTGTEYIKSREEMERLFVDHLPAEVVQQALDNTMSVAEKVEDYDILGRYQMPR 296

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            F   E         + L      GL  RL     A     + Y +R+  EL ++ +M F 
Sbjct: 297  FPIPEG----HTPVSYLHEVTEQGLRQRLQLD--ADSSIDELYGERMRHELKIMEQMGFP 350

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFL+V D+I++A+ N IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R S
Sbjct: 351  TYFLVVWDYIRFARDNGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKS 410

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD D DFC  RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DR
Sbjct: 411  MPDIDTDFCIARRSEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADR 470

Query: 475  LCKLIPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            L KLIP     P  L  +    + +  FR+   +DP V R +++++++EG  +    HAA
Sbjct: 471  LAKLIPVVRGKPAKLAQMISEDSPEPEFRQKYESDPQVKRWVDMARRIEGTNKTFGVHAA 530

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL- 589
            G+VI   PL +LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT+++K+L+ + 
Sbjct: 531  GVVIAADPLDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIEKTLELVS 589

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            A+ G + D   +P DD ETY LL      GIFQLES+GMRQ +  ++P  +EDI ++++L
Sbjct: 590  AEHGDRPDPDQLPADDPETYQLLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILAL 649

Query: 650  YRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            YRPGP+D   I  + NRK+G+E I      + P+L+ET G+++YQEQ+M+IAQ L+GYSL
Sbjct: 650  YRPGPLDAGLIPKFINRKHGREAIEFADAKLQPILQETYGIMVYQEQIMRIAQDLAGYSL 709

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             EAD+LRRAMGKK   EM K +  F+ GAS+ G+   +A  +F+ +  FA+Y FNKSH+ 
Sbjct: 710  GEADLLRRAMGKKKVSEMQKHRGIFVEGASQRGVDAKVADELFDQMVLFAEYCFNKSHST 769

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AY  ++YQTA++K HYPV ++AA +T+     EK++++  ++    I ++PP VN   +D
Sbjct: 770  AYGAVTYQTAYLKAHYPVAYMAALLTVNAGVTEKVQRYIANSNAMGIAVLPPDVNRSGID 829

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKL-NRRVLESL 885
            F     RI + L+A++ +G      ++ +   D PF SL + C R+      NRR LESL
Sbjct: 830  FTPVGQRILFGLSAVRNLGDGAIHALIASRQSDGPFTSLAELCDRMAGIGQLNRRSLESL 889

Query: 886  VFAGALDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTN---------KHENIFAHEKGTF 934
            + +GALD      +R QL+  LD +  +A    ++R +            +       T 
Sbjct: 890  IHSGALDALEPDGNRAQLMADLDLLLDWATARARDRASGQGNLLDLLGGGSEAEAASATP 949

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
            +             + +   E+ ++GFY S HPL   +   R +   G            
Sbjct: 950  ASAPKAASVPDYAPTEKLRLEKELVGFYLSDHPLKQLQDTRRLLMPVGLGSLSEQSDRQR 1009

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +    MV   +   TRKG R+  +   +     EA  FP
Sbjct: 1010 VSTLVMVPEMRVVTTRKGDRMAILQIEDLTGSAEAVVFP 1048


>gi|293192339|ref|ZP_06609450.1| DNA polymerase III, alpha subunit [Actinomyces odontolyticus F0309]
 gi|292820254|gb|EFF79248.1| DNA polymerase III, alpha subunit [Actinomyces odontolyticus F0309]
          Length = 1180

 Score = 1014 bits (2623), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1067 (33%), Positives = 556/1067 (52%), Gaps = 52/1067 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL  HS YS+L+GA     + ++ A   QPAI +TD   LF A +F      AG+
Sbjct: 2    ADSFVHLHNHSEYSMLDGAAKTKAMAEEAARLGQPAIGLTDHGYLFGAFDFYTNCKNAGV 61

Query: 68   QPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            +PIIG +  +                        +   +   + L+     G   L  L 
Sbjct: 62   KPIIGLEAYVTPGTSRFDRQKVLWGEPWQRADDVSAGGSYNHLTLVAYNTTGMHNLFRLG 121

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S      Q  +  R     L +   EGLI+ TG  SG +           A       + 
Sbjct: 122  SYASTDGQFGKWPRADKELLSQFH-EGLIVFTGCPSGAVQTRLRLGQWDEAVAEAAELRD 180

Query: 177  LF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            +F  +  YV +  H    +R    QV+++A     PLVATN++ ++  ED +  D L+ +
Sbjct: 181  IFGAENFYVEVMDHGIDIERRTHQQVLEIAKLMNAPLVATNDAHYVKREDRKIQDALLCI 240

Query: 235  AHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAP 290
               + ++  DR +   D +Y+++  EM +++S+LP A ++T+EIA RC       +  A 
Sbjct: 241  NSGSRINDPDRFKFDGDGYYIRSSDEMRALWSELPGACDSTLEIAERCDVHFTTTKEGAN 300

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             +P F   E +D    + +    +   GL  R   G         D R++  +E +VI +
Sbjct: 301  YMPDFPVPEGED----KTSWFIKEVERGLRDRFPNGI------PDDVRKQAQYEEDVIIK 350

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F GYFL VAD+I WAK   I VGPGRGSGAGS+ AYAL IT+++PL   L+FERFLNP
Sbjct: 351  MGFPGYFLTVADYINWAKSQGIRVGPGRGSGAGSMVAYALKITELNPLEHGLIFERFLNP 410

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFD+DF + RRDEVI YV+ KYG +R++Q++T+G+++ K AL+D  R L   + 
Sbjct: 411  ERISMPDFDVDFDERRRDEVIAYVKRKYGEDRISQVVTYGTIKTKQALKDSARILGKDFK 470

Query: 471  QVDRLCKLIPN-DPAHPVSLQAIADD--------SRFREARLADPSVDRLLEISQKLEGL 521
              ++L K +P       +++  I D+        S FR+    +P    +++ +  LEGL
Sbjct: 471  VGEQLTKALPPAIMGKDITVHGIFDEKDKRYAEASEFRKFYEENPDTHEVVQYALGLEGL 530

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HA  +++    L+ ++P+ +  +    +TQF+    E  GL+K DFLGL+ LT+
Sbjct: 531  TRQWGVHACAVIMSSHTLTDIIPIMKRPQDGAIITQFDYPTCETLGLLKMDFLGLRNLTV 590

Query: 582  LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +L+ +A       DL  + FDD +TY LL    TLG+FQL+  GMR  L+ M+PD  
Sbjct: 591  VSDALENIALNGKPDPDLDHLTFDDKKTYELLGRGDTLGVFQLDGGGMRDLLKLMKPDNF 650

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQEQ 694
            EDI A+ +LYRPGP+  ++   Y  RKNG+++I  IHP +    + +L  T G+I+YQEQ
Sbjct: 651  EDISAVGALYRPGPMGANSHTNYALRKNGRQEITPIHPELAEPLEDILGTTFGLIVYQEQ 710

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VMQIAQ L+GYSL +AD+LR+AMGKK KE +D+Q + F  G   NG S+     +++++ 
Sbjct: 711  VMQIAQKLAGYSLGQADILRKAMGKKKKEVLDQQFKGFRQGMVANGYSEESIKALWDVVV 770

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+ Y FNK+H+AAY ++SY TA++K ++P E++AA +T   DN ++   +  + R  +I
Sbjct: 771  PFSAYAFNKAHSAAYGLVSYWTAFLKANFPTEYMAALLTSTKDNKDRRALYLAECRHMDI 830

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873
             ++PP VN    +F      I + L AI+ VG      I+E  A+   F S +DF  +V 
Sbjct: 831  TVLPPDVNASMGNFAPDGEAIRFGLNAIQNVGGPVVDAIVETRAEKGRFASFQDFLDKVP 890

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
                N+R ++SL+ AGA D  G++R  LL   D        V++N      ++F      
Sbjct: 891  QVVCNKRTIQSLIRAGAFDSMGHTRRALLARCDEAVDAIIDVKRNEAIGQFDLFGALGED 950

Query: 934  FSD----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-- 987
                    I +      +   +   E+ +LG Y S HPL   +  L +       + V  
Sbjct: 951  EDTGSGLTIDIPDLPEFDRKTKLAAEREMLGLYVSDHPLRGVEAALARHQDYEIAQVVGS 1010

Query: 988  -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +    +++A ++     K T++G+     T  + +   +  FFP
Sbjct: 1011 DGAMADRIVKIAGLISGVTTKVTKQGNAWAIATIEDMSGSVDVLFFP 1057


>gi|114330405|ref|YP_746627.1| DNA polymerase III, alpha subunit [Nitrosomonas eutropha C91]
 gi|114307419|gb|ABI58662.1| DNA polymerase III, alpha subunit [Nitrosomonas eutropha C91]
          Length = 1166

 Score = 1014 bits (2623), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1052 (39%), Positives = 611/1052 (58%), Gaps = 47/1052 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FVHL++HS YS+++G + +   + K      PA+A+TD +NLF  ++F Q AC 
Sbjct: 1    MLINPVFVHLRLHSEYSVVDGIVRIEEAVAKARDTGMPALALTDLSNLFGLVKFYQHACK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC + I  +++                ++LL  +  GY  L  L+SR Y  + 
Sbjct: 61   AGIKPIAGCDVWISNENDA----------DRPFRLLLLCQSFSGYLLLSRLLSRAYRENM 110

Query: 125  GKQSVRICLSWLQE-IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             +    +   W +E  GTEGLI L+GG  G ++R         A      +  LF +R Y
Sbjct: 111  QRGRAELKKDWFREGAGTEGLIALSGGEQGEVERL-LLADPDAATTAAQEWAALFPERFY 169

Query: 184  VNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q   R  +      +++L    +LP+VAT+   F+  ED+ AH+  + +A   V+  
Sbjct: 170  LEIQRCGRPDEEVTNHAMLELVSGLKLPVVATHPVQFMQPEDFRAHEARVCIAQGYVLGD 229

Query: 243  KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            + RPR  T   Y K  +EM  +F D+PEAL N+VEIARRCS +L++    LP F      
Sbjct: 230  RRRPREFTEQQYFKTAAEMSELFGDVPEALANSVEIARRCSLMLELGVNRLPDFPTPAGI 289

Query: 302  DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
             +    E  LR++A AGL VR+ Q    A  +      Y+ RLDFE+  I +M F+GYFL
Sbjct: 290  SV----EQYLRDRAQAGLVVRMTQLFPEAAQRDEKYPAYQARLDFEVETIIQMGFAGYFL 345

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV+DFI WAK++++PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDF
Sbjct: 346  IVSDFISWAKQHDVPVGPGRGSGAGSLVAYSLDITDLDPLRYDLLFERFLNPERVSMPDF 405

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFCQDRR++VI YV+++YG E VAQI TFG++ AKA +RDVGR L +PY+ VD+L KL
Sbjct: 406  DIDFCQDRREQVIEYVRDRYGAESVAQIATFGTMAAKAVVRDVGRVLDLPYNFVDQLAKL 465

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +P +    +  +A   +    +   A+  V  LLE++++LEGL R+   HA G++I    
Sbjct: 466  VPFELGMTL-HKAREIEPLLNQRAEAEEDVRNLLELAERLEGLTRNVGMHAGGVLIAPGK 524

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594
            ++   P+Y     D  V+Q++   +EK GL+KFDFLGL+TLT+L +++  + Q  +    
Sbjct: 525  ITDFCPVYCADSGDAVVSQYDKDDVEKIGLVKFDFLGLRTLTILDRAVADIRQYQLASLG 584

Query: 595  ------------KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
                        +  L  I  +D  T+ L+    T+GIFQ ES GM+  L+  +PD  ED
Sbjct: 585  GKDAGEQSVEENRFSLGDISLEDAATFALMAKGNTVGIFQFESRGMKDLLQKAKPDRFED 644

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            +IALV+LYRPGP+D I  +  RK+GK ++  + P + P+L  T G++IYQEQVMQIAQ++
Sbjct: 645  LIALVALYRPGPMDLIPDFIERKHGK-RVEYLDPRLQPILGPTYGIMIYQEQVMQIAQVI 703

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
             GYSL  AD+LRRAMGKK  EEM +Q+  F+ GA +NG+ +  AV +F L+ KFA YGFN
Sbjct: 704  GGYSLGGADLLRRAMGKKKVEEMAQQRAVFVEGAIRNGMMEADAVTLFSLMEKFAGYGFN 763

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            KSHAAAYA+I+YQTA++K HYP EF+AA M+ +MD+ +K+  F +D +   I I+PP +N
Sbjct: 764  KSHAAAYALIAYQTAYLKAHYPAEFMAACMSSDMDDTDKVNVFYEDCKLNGIAILPPDIN 823

Query: 823  TPCVDF-KVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRR 880
                 F  V    I Y L AIKG G      I+ A      F  L DFC RVD + +NRR
Sbjct: 824  QSAYYFVPVDRKTIRYGLGAIKGTGEAAISAIVRAREQGIAFTGLFDFCQRVDRRIVNRR 883

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             +E+L+ AGA D    +R  L+ S+    +YA+    + T    ++F  +      +  +
Sbjct: 884  TIEALIRAGAFDTVEANRAALMASVGMALEYAE--HCSLTASQVSLF-DDNADLLQQPVI 940

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
             + +      + + E+  LGFY SGHP D Y   L +                   +A +
Sbjct: 941  TEIAQWPEKEKLQYEKMSLGFYLSGHPYDSYAKELSRFIPARLGRIAPGREPQ--LIAGV 998

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + + + + +R+G  +  VT  +     E   +
Sbjct: 999  IYAIRTQMSRRGK-MAIVTLDDGMARVELVVY 1029


>gi|257068282|ref|YP_003154537.1| DNA polymerase III subunit alpha [Brachybacterium faecium DSM 4810]
 gi|256559100|gb|ACU84947.1| DNA polymerase III, alpha subunit [Brachybacterium faecium DSM 4810]
          Length = 1191

 Score = 1014 bits (2623), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1079 (35%), Positives = 566/1079 (52%), Gaps = 62/1079 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              S  FVHL VH+ YSLL+GA  ++ ++ +     QPA+AITD   LF A EF + A  A
Sbjct: 4    SSSDDFVHLHVHTDYSLLDGAAKIDKLVAETVRQGQPAVAITDHGYLFGAYEFYKAAKDA 63

Query: 66   GIQPIIGCQLDIDMQ----DNLK---------MTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            GI+PIIG +  +       D  +         +     +       + LL  +  G   L
Sbjct: 64   GIKPIIGIEAYVTPGTSRHDRTRTQWGTREQQLAGDDVSARGAYTHMTLLSHSTTGMHNL 123

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
              L S   L  Q  +  R+    L +  ++GLI  TG  SG +           A K   
Sbjct: 124  FRLGSAASLEGQMGKWPRMDREILSQY-SDGLIATTGCPSGEVQTRLRLGQFDEAVKAAG 182

Query: 173  TFKKLF-GDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             F+ +F  +  +V L  H      R S+ ++++A     PL+ATN+  +++E+D    DV
Sbjct: 183  EFQDIFGKEHYFVELMDHGLDIEKRVSKDLLEVAKAVGAPLLATNDLHYVTEQDATIQDV 242

Query: 231  LMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV-- 287
            L+ +   + ++  DR +     +YLK+  +M  +F ++PEA +NT+ +A  C    +   
Sbjct: 243  LLCINSGSRLNDPDRFKFGGSGYYLKSAQQMRELFREMPEACDNTLRVAEMCDVEFRTTA 302

Query: 288  -HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
              A  +P F     +D    EE+    +   GLE R   G         D ++R D+E++
Sbjct: 303  EGANYMPHFPTPPGED----EESWFVKEVQRGLEYRYPAGI------PDDVQKRADYEVS 352

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI +M F GYFL+V+D+I+WAK+ +I VGPGRGSGAGS+ AYA+ ITD+DPL   LLFER
Sbjct: 353  VILQMGFPGYFLVVSDYIKWAKEQDIRVGPGRGSGAGSMVAYAMRITDLDPLEHGLLFER 412

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNPDR+SMPDFD+DF   RR EVI YV+ KYG +R+AQ+ T+G ++ K +L+D  R L 
Sbjct: 413  FLNPDRVSMPDFDVDFDDRRRGEVIEYVERKYGDDRIAQVATYGVMKTKNSLKDAARVLD 472

Query: 467  MPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQK 517
             P+S  DRL K +P       +S++ I D           FR     DP V +++EI++ 
Sbjct: 473  YPFSMGDRLSKALPPTVMGKDISVKGIFDPEDKRYAEAGEFRRIHDEDPDVQKVVEIAKG 532

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EGL R    HA  +++   PL  +VPM R       +TQF    +E  GL+K DFLGL+
Sbjct: 533  VEGLTRGWGVHACAVIMSSDPLVDIVPMMRRPSDGQIITQFEYPTLETLGLLKMDFLGLR 592

Query: 578  TLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT+L  ++  +A+      DL  +PFDD  TY LL    TLG+FQL+ SGMR  L  M+
Sbjct: 593  NLTVLSDAVANMARNGKTPPDLETLPFDDPATYELLQKGDTLGVFQLDGSGMRTLLRQMK 652

Query: 637  PDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDP----MLKETQGVII 690
            PD   DI A+ +LYRPGP+       Y  RKNG ++I  IHP ++     +L ET GV++
Sbjct: 653  PDQFGDITAVSALYRPGPMGMGSHTNYALRKNGLQEITPIHPELEEPLAEILDETYGVLV 712

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVMQ AQ ++GYSL EAD+LRRAMGKK K E+DKQ   F +G   NG S      ++
Sbjct: 713  YQEQVMQTAQKVAGYSLGEADILRRAMGKKKKAELDKQYVSFEAGMKSNGYSDAAVQALW 772

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            E L  FADY FNKSH+AAY V+SY TA++K ++P E++AA +T   +N +++  +  D R
Sbjct: 773  ETLLPFADYAFNKSHSAAYGVVSYWTAYLKANHPTEYMAALLTSTQENRDRLGLYLGDCR 832

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFC 869
               I ++PP VN   + F      I + L+AI+ VG      I++   +   F S  DF 
Sbjct: 833  HRGITVLPPDVNESDLYFSAVGEDIRFGLSAIRNVGAHVVEEIIKTREEKGAFTSFTDFL 892

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             +V     N+R +ESL+  GA D  G +R  L+   ++       V++       ++FA 
Sbjct: 893  DKVPLSVCNKRTIESLIKGGAFDELGANRRSLVLIHEDAVDSVVDVKRKEAQGQYDLFAD 952

Query: 930  ------------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                             +  IT+      +   +   E+ +LG Y S HPL   + ++ +
Sbjct: 953  MFAGAGGDGEESMASGSAATITVPDLPEWDRKEKLAFERNMLGLYVSDHPLYGLEHVIAQ 1012

Query: 978  M---GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 I    +  A   G  + +A ++ S Q+K T+KG      T  +     +   FP
Sbjct: 1013 NSSTSISALADDGAVQDGTMVTIAGLITSLQRKTTKKGDMWAIATVEDLEGSIDCLLFP 1071


>gi|170781777|ref|YP_001710109.1| DNA polymerase III subunit alpha [Clavibacter michiganensis subsp.
            sepedonicus]
 gi|169156345|emb|CAQ01493.1| DNA polymerase III alpha chain [Clavibacter michiganensis subsp.
            sepedonicus]
          Length = 1170

 Score = 1014 bits (2623), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1061 (36%), Positives = 566/1061 (53%), Gaps = 46/1061 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++ SFVHL VHS YS+L+GA  +  ++   A    PA+AITD  N+F A +F ++A A
Sbjct: 1    MPRNDSFVHLHVHSEYSMLDGAARVGPLVQAAAEQGMPAVAITDHGNVFGAFDFWKQAKA 60

Query: 65   AGIQPIIGCQLDIDM------QDNLKMTNQGKTPF---PTVPSIVLLVSTAEGYQRLIEL 115
            AG++PIIG +  I        +  ++  N G+           + +L  T EG   L  L
Sbjct: 61   AGVKPIIGTEAYITPGTHRGDRTRIRWGNGGQDDVSGSGAYTHLTMLAETTEGMHNLFRL 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             SR  L        R+    L     +GLI  TG  SG +           A K    F+
Sbjct: 121  SSRASLEG-YYFKPRMDRELLSTYA-KGLIATTGCPSGEVQTRLRLGQYDEAVKAAADFR 178

Query: 176  KLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +F  +  +  +  H  G +R   + + +LA    LPLVATN+  +  E D  +H  L+ 
Sbjct: 179  DIFGAENYFCEVMDHGLGIERRIMTDLHRLAKDLGLPLVATNDLHYTHEHDATSHAALLC 238

Query: 234  VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            V   T +   +R +   D  YLK   +M  +F D  EA +NT+ IA RC       A  +
Sbjct: 239  VQSGTTLDDPNRFKFDADEFYLKTAQQMRHLFRDHEEACDNTLLIAERCDVQFNESANYM 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            PR+   E +     E+     +   GL  R  +G       + D R+R D+E+ VIA+M 
Sbjct: 299  PRYPVPEGE----SEQTWFVKEVERGLVRRYPRG------FSDDVRKRADYEVGVIAQMG 348

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFL+VADFI W+K+N I VGPGRGSGAGS+ AYA+ ITD+DPL   LLFERFLNPDR
Sbjct: 349  FPGYFLVVADFINWSKENGIRVGPGRGSGAGSMVAYAMGITDLDPLEHGLLFERFLNPDR 408

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFD+DF   RR EVIRYV +KYG ERVAQI+T+G+++AK AL+D  R L  P+S  
Sbjct: 409  VSMPDFDVDFDDRRRGEVIRYVTDKYGDERVAQIVTYGTIKAKQALKDSSRVLGYPFSMG 468

Query: 473  DRLCKLIPN-DPAHPVSLQAIADDSR--------FREARLADPSVDRLLEISQKLEGLYR 523
            D+L K +P       + L  I D           FRE    DP   ++ E +Q +E L R
Sbjct: 469  DKLTKAMPPAIMGKDIPLSGILDTEHPRYREAGDFREVLAMDPEAQKVFETAQGIENLKR 528

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
                HAAG+++   PL  ++P+ +  +    VTQF+    E  GLIK DFLGL+ LT++ 
Sbjct: 529  QWGVHAAGVIMSSEPLIDIIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIID 588

Query: 584  KSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             +L+ +   RG K+ L  +  DD   Y LL    TLG+FQL+   MR  L  M+PD  ED
Sbjct: 589  DALNNIESNRGEKLVLEDLGLDDQGAYDLLARGDTLGVFQLDGGPMRSLLRMMKPDNFED 648

Query: 643  IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVM 696
            I A+++LYRPGP+  ++   Y  RKNG ++I  IHP ++     +L  T G+I+YQEQVM
Sbjct: 649  ISAVIALYRPGPMGANSHTNYALRKNGLQEITPIHPELEEPLREVLGTTHGLIVYQEQVM 708

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
             +AQ L+G++L++AD+LRRAMGKK K E+DKQ E F  G   NG S      ++++L  F
Sbjct: 709  SVAQKLAGFTLAQADLLRRAMGKKKKSELDKQFEGFSQGMKDNGYSMAAVKALWDILLPF 768

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            +DY FNK+H+AAY V+SY TA++K HYP E++AA +T   D+ +K+  +  + R+  I++
Sbjct: 769  SDYAFNKAHSAAYGVVSYWTAYLKAHYPAEYMAALLTSVGDSKDKMALYLNECRRMGIKV 828

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSK 875
            +PP VN     F      I + L A++ VG      +  A      F+S +DF  +V   
Sbjct: 829  LPPDVNESIGFFAAAGADIRFGLGAVRNVGANVVEALRGARTEQGAFESFDDFLKKVPLP 888

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI-FAHEKGTF 934
              N+R +ESL+ AGA D  G +R  LL+  + +   +   ++   N      F       
Sbjct: 889  VANKRTVESLIKAGAFDSLGDTRRALLEVHEGMIDASVSDKRAAMNGQVGFDFDSLWDEP 948

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT---IR 991
                 + +        +   E+ +LG Y S HPL   +  L K+   G  E +AT   + 
Sbjct: 949  QHARKVPERPEWAKRDKLAFEREMLGLYVSDHPLAGLEIPLAKLASTGIAELLATDASMD 1008

Query: 992  GNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANF 1031
            G  + LA ++ S Q +  R  G++ G V   +   E    F
Sbjct: 1009 GETVTLAGLLTSVQHRTARNSGNQYGMVQLEDFGGEITCMF 1049


>gi|237752431|ref|ZP_04582911.1| DNA polymerase III subunit alpha [Helicobacter winghamensis ATCC
            BAA-430]
 gi|229375920|gb|EEO26011.1| DNA polymerase III subunit alpha [Helicobacter winghamensis ATCC
            BAA-430]
          Length = 1164

 Score = 1014 bits (2623), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1053 (35%), Positives = 592/1053 (56%), Gaps = 38/1053 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++P F HL +H+ YSLL+G   +  +  KI      ++A+TD  N+F A+EF +   A
Sbjct: 2    MSQTPKFTHLHLHTEYSLLDGLNKVKVLAKKIKEYGMDSVAVTDHGNMFGAIEFYKAMKA 61

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI+G +  +   + +   +  +        + L     EGY+ L+ L S+  L   
Sbjct: 62   EGIKPILGMEAYLHNAEEISDKSNQR------FHLCLYAKNLEGYKNLMYLSSQACLYG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA--------FFFNSSQVAEKRLLTFKK 176
                 RI    L+E  + GLI  +   +G +                 + A++  L +K+
Sbjct: 115  FHMKPRISKKMLRE-HSAGLICSSACLNGEVQWHLNTKKDDNKGRKGYERAKEVALEYKE 173

Query: 177  LFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            +FG+  Y+ L RH   ++   ++Q+++L+    + ++ATN++ + ++ D  A +V   + 
Sbjct: 174  IFGEDFYLELMRHGIEEQQLIDNQLLKLSQETGIKIIATNDTHYANQSDSTAQEVAFCIG 233

Query: 236  HSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP- 293
                    +R R T  + Y+K   +M  +++DLPEALE+T EIA +C+  L +  P  P 
Sbjct: 234  FGKDFDDPNRMRHTVQEFYIKTPEQMAELYADLPEALEHTQEIANKCNLELHLGDPTPPS 293

Query: 294  -----RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                  + + E  D  ++ E     K   GL+ RL      K     +Y +RL+ E+ +I
Sbjct: 294  FKFTQEYAKAEGLDFTQDSE-YFAYKCREGLKKRLLNVPQEKHT---EYAERLEREIEII 349

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
              MKF GY LIV DF++ AK+  IPVGPGRGS AGS+ A+ L IT+IDPL++ LLFERFL
Sbjct: 350  NSMKFPGYMLIVWDFVRAAKERGIPVGPGRGSAAGSLVAFCLEITNIDPLKYDLLFERFL 409

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DFCQ RR E++ YV  KYG   VAQ+ITFG ++AKA +RDV R + MP
Sbjct: 410  NPERVSMPDIDMDFCQSRRGEILDYVTEKYGRHNVAQVITFGMMKAKAVIRDVARVMGMP 469

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            Y+  D   KLIP +    +   A   + +  E    DP   ++ E +  LEG  R+  TH
Sbjct: 470  YNDADSFAKLIPKELEITLE-DAFNKEPKIAELISRDPLAKKVWEFALILEGTKRNPGTH 528

Query: 529  AAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            AA +VI   + L    P+YR  R  +  TQ++MK++E   LIKFDFLGLKTLT++  +L 
Sbjct: 529  AAAVVIDSTQELWHKAPLYRSQRDGIIATQYSMKYLEDVDLIKFDFLGLKTLTVVDDALK 588

Query: 588  FLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             + +R   ++D   I  +D + Y  L +  TLG+FQ+ESS  +   + M+P   EDIIA 
Sbjct: 589  LIEKRSGKRIDFLNIDVNDKKVYETLQSGNTLGVFQIESSMFQGINKRMRPSTFEDIIAT 648

Query: 647  VSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ++L RPGP+++ +V  + NRK+GKE IV +   ++P+L+ T G I+YQEQVMQI Q + G
Sbjct: 649  IALGRPGPLESGMVDDFINRKHGKEPIVYMFDELEPILRPTYGTIVYQEQVMQIVQRIGG 708

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            +SL  AD++RRAMGKK  + M   K +F  GA   G  +  A  ++EL+ KFA YGFNKS
Sbjct: 709  FSLGGADLIRRAMGKKDAQIMADNKSKFADGAVAQGFDRAKAEELWELIVKFAGYGFNKS 768

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA+I+++TA++KT+YP EF+AA +T E ++ +K+ ++ ++A Q  I+++PPS+   
Sbjct: 769  HSAAYAMITFETAYLKTYYPKEFMAALLTSEKNDTDKVVEYTEEANQMGIKVLPPSIQKS 828

Query: 825  CVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNR 879
             ++F V    G+  I + L AIKG G      I+E    +  F  LEDF  R+D  K+N+
Sbjct: 829  ELEFSVAEVDGEASILFGLGAIKGAGEIAINIILEERKQNGNFKDLEDFLKRIDPSKVNK 888

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            + LE+ + +GALD  GY+R  LL+ ++++ + A+  +  +     ++F +++     ++ 
Sbjct: 889  KSLEAFIKSGALDGMGYTRKSLLEQVESLTEAAKLSQTAQKEAAGSLFGNDEELMRVQLD 948

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
            L+     +     E E+  LGFY SGHPLD YK   +++      +       + I +  
Sbjct: 949  LQDLGEYSQKEILEFEKESLGFYASGHPLDAYKESFKEIDYTPSNQVKDVAENSRILILG 1008

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +     K ++ G R G +   +     E   F
Sbjct: 1009 QIEDIIVKFSKTGKRYGMLKIQDLYGSVELTIF 1041


>gi|319944370|ref|ZP_08018644.1| DNA-directed DNA polymerase III alpha subunit [Lautropia mirabilis
            ATCC 51599]
 gi|319742331|gb|EFV94744.1| DNA-directed DNA polymerase III alpha subunit [Lautropia mirabilis
            ATCC 51599]
          Length = 1203

 Score = 1014 bits (2623), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1050 (38%), Positives = 611/1050 (58%), Gaps = 37/1050 (3%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             + P FVHL++ S YS+++  + L+  +    AD Q A+A++D +NLF  ++F ++A   
Sbjct: 40   AEGPGFVHLRMRSEYSVVDSIVRLDEAVAAAVADGQMALALSDASNLFGWVKFYKQASGK 99

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+QPI    + I   +N                ++L+ +   GY+RL EL+SR +L ++ 
Sbjct: 100  GLQPICAADVWITNAEN----------RDRPYRLLLIAANNAGYRRLCELLSRAWLENEY 149

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            K    +   WL    T GLI L+G   G + +     +   A +    +   F D  Y+ 
Sbjct: 150  KGHAELLPEWLTAETTGGLIALSGAGGGEVGQFLLAGNHARAVEAAQHWAAAFPDAFYLE 209

Query: 186  LQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +QR    +    ++   +LA   +LPLVAT+   FL EED+ AH+  + +A   V++   
Sbjct: 210  VQRDGTPEAESCTRATARLAVELDLPLVATHPIQFLREEDFRAHEARVCIAEGEVLADPK 269

Query: 245  R-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R  R  P  Y + R+EM+++F+DLP AL N+VEIARRC+  L++  P LP +   E   I
Sbjct: 270  RVRRFQPTQYFRTRAEMMALFADLPAALANSVEIARRCAVTLRLGNPQLPIYPTPEGVSI 329

Query: 304  QKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                E  L ++A  GL  RL         +   A +Y  RL  E   I +M F GYFLIV
Sbjct: 330  ----EEYLVHQAEDGLAKRLEKLYPDPEVRAQKAPEYEARLKRECETIIKMGFPGYFLIV 385

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFI WAK+N +PVGPGRGSGAGS+ A++L ITD+DPL ++LLFERFLNP+R+SMPDFDI
Sbjct: 386  ADFIVWAKQNGVPVGPGRGSGAGSLVAFSLGITDLDPLPYALLFERFLNPERVSMPDFDI 445

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQD R +VI YV+ KYG++ V+QI TFG++ +KA +RD GR L MPY+  D+L KLIP
Sbjct: 446  DFCQDNRGKVIEYVRRKYGYDAVSQIATFGTMASKAVIRDAGRVLDMPYNFCDQLSKLIP 505

Query: 481  NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             + A P+SL +A+  + +  E    +  V  L  +++ LE + R+   HA G++I    L
Sbjct: 506  IEQAKPLSLDKALKAEPQLAERLANEEEVAELFALARPLEDMTRNIGMHAGGVLIAPGKL 565

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+YR   +D  V+Q++   +E  GL+KFDFLGL+ LT++  ++ ++ +R       
Sbjct: 566  TDFCPLYRAPGTDSVVSQYDKDDVEAVGLVKFDFLGLRNLTIIDLAVRYVNERRAREGQE 625

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VDL  + FDD   Y +L    T+ IFQ+ES GM++ L  +QPD  EDIIA+++LYRPGP
Sbjct: 626  PVDLDNLGFDDQAAYQILRDGNTVAIFQVESDGMKKLLRKLQPDRFEDIIAVLALYRPGP 685

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            + + +V  +  RK G++ I   HP +   L+ T GVI+YQEQVMQI+Q+++GY+L  AD+
Sbjct: 686  LGSGMVDDFILRKRGEQAIDYFHPDLKDCLEPTYGVIVYQEQVMQISQIIAGYTLGGADL 745

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  EEM KQ++ F+ GA+  G    +A  +F+L+ KFA+YGFNKSH AAYAV+
Sbjct: 746  LRRAMGKKKAEEMAKQRKTFMEGAAAKGQDPDLASQLFDLMEKFAEYGFNKSHTAAYAVV 805

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTAW+K HYP EF+AA+++ +MD+ +K++ F +DA+   +++ PP +N     F+   
Sbjct: 806  TYQTAWLKAHYPAEFMAATLSSDMDDTDKVQIFVRDAQANQVEVQPPDINASAYRFEPAA 865

Query: 833  NR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             R I Y L  +KGVG +   +++ A  A  PF  L DFC R+D K +NRR +E+LV AGA
Sbjct: 866  PRAIRYGLGGVKGVGQSAIENVVAAREAGGPFIDLFDFCERIDRKLINRRTIEALVRAGA 925

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF---SVEN 947
             D     R +LL ++    + A+   + +      +F       +D+    ++      +
Sbjct: 926  FDRLDPDRARLLANVPQAMEAAEQKAREQAAGQGGLFDDAFFGGTDEAPAREWLPAERWD 985

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKM---GIKGYEESVATIRGNN-IRLAAMVVS 1003
               R   E+  LG++ +GH  D  +  +R+     I   E+ V    G+  + +A +V  
Sbjct: 986  DRQRLLEEKSALGYFLTGHLFDACRDEVRRFVKTRIGDLEKIVGKHFGSTPVTVAGIVSG 1045

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 TR+G  +  V   + +   E   FP
Sbjct: 1046 LSTAMTRRGK-MVRVMLDDGSGTEEIAVFP 1074


>gi|313892071|ref|ZP_07825669.1| putative DNA polymerase III subunit alpha [Dialister microaerophilus
            UPII 345-E]
 gi|313119523|gb|EFR42717.1| putative DNA polymerase III subunit alpha [Dialister microaerophilus
            UPII 345-E]
          Length = 1138

 Score = 1014 bits (2623), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1032 (36%), Positives = 571/1032 (55%), Gaps = 28/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YSL +G   +  ++  +    Q AIAITD   ++ A+   ++    GI+P
Sbjct: 3    SFVHLHSHTEYSLFDGISRIKELVSYVKELGQQAIAITDHGAMYGAVYLYKECMKQGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +      K  N  K     +  ++LL    EGYQ LI++ S+ ++        
Sbjct: 63   IIGCELYVTADSRFKKGNAFKE---KLGHLILLAENNEGYQNLIKICSKAWVEG-YYVKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L++  ++G+I LT    G I +A      + A K    +   F  +  ++ LQ 
Sbjct: 119  RVDHDLLRKY-SKGIIALTSCIGGEIPQAILNGDKEKARKLTEFYIDTFGRNNFFLELQN 177

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +      ++  +A  + L LVATN+  ++ +ED ++H++ + ++    +   +   
Sbjct: 178  HGMPEEAIVRQELSLIAKEYNLGLVATNDFHYVRKEDAKSHEIKLCISTGNTLDNPNHFA 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + Y K+  EM S+  + P A+ENT  IA RC+  L      LP +         + 
Sbjct: 238  FANNEFYCKSGEEMKSLLGEFPGAIENTKIIAERCNVKLTFGKHKLPSYDVP----CGET 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR      L  R       +         RL++ELN+I +M FS YFLIV DFI++
Sbjct: 294  AATYLRKLCFDALPKRYPHFNDKE-------ESRLNYELNIINQMGFSDYFLIVMDFIRY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IP+GPGRGS AGS+ AY L IT+IDPLRF LLFERFLNP+R+SMPD D D C  R
Sbjct: 347  AKNKGIPIGPGRGSAAGSIVAYLLDITEIDPLRFDLLFERFLNPERVSMPDIDTDLCYRR 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E+I Y+++KYG E+VAQIITFG+L A+A +RDVGR + +P  +VDR+ K+IP  P   
Sbjct: 407  RGEIIEYLKSKYGEEQVAQIITFGTLAARAVIRDVGRVMSIPLKEVDRIAKMIPGGPGVT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +    +     F      + +V  L+E   KLEGL R + THAAG+VI  +P+ + VP+ 
Sbjct: 467  LK-STLESSRDFLNEYENNNTVRTLVEHCIKLEGLSRQSGTHAAGVVICSKPVYEYVPIQ 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
               + D   TQ+     E+ GL+K D LGL+ LT++  +L  + + RG+ V +  I   D
Sbjct: 526  L-TQDDFIQTQYEKDLDEELGLLKMDLLGLRNLTVIHDTLQMIKENRGITVKMYEIDDSD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
             +T ++L    T+G+FQ ES G    L  + P+  ED+I +V+LYRPGP+ + +   + N
Sbjct: 585  AKTCNMLCMGDTVGVFQSESDGFTNLLMQLHPERFEDLIPMVALYRPGPLGSGMAEDFIN 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+GK K+   HP ++ +LKET GVI+YQEQVMQIA  + G++L ++D+LRRAMG K  E
Sbjct: 645  RKHGKTKVDYPHPSLEKILKETYGVILYQEQVMQIASEMGGFTLGQSDLLRRAMGHKEPE 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  Q+E F+ GA   GI K+I+ ++F+L+  FA YGFNKSH+  Y  I+++TA++K ++
Sbjct: 705  ILQAQRELFVKGAEGKGIDKSISNHVFDLMVHFAGYGFNKSHSVCYGRIAWETAYLKANF 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              EF+A+ MT  + ++ K+ ++ ++ R+  I+++ P +N     F V    I + L+ I+
Sbjct: 765  RPEFMASMMTCYIGDINKVNRYIENTRKAGIKVLAPDINKSQAYFSVKGENIIFGLSGIQ 824

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG     HI+E+      F  L D   R+DSK LN R  ESL+  GALDCFGY R QLL
Sbjct: 825  NVGENAVNHIIESRNKKGDFKDLIDLLERIDSKILNSRACESLIKCGALDCFGYDRSQLL 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              LD+    A     +R    +N+FA  +     +I        +   +   E+++LGFY
Sbjct: 885  AVLDDAINIAASGRFDRDAGQQNLFAESE--IIREIDYPDIEPMSKKEKLHWEKKLLGFY 942

Query: 963  FSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             SGHPLD Y  ++      K ++ +     G  + +  +V   ++  T+KG  +G+ T  
Sbjct: 943  VSGHPLDEYSDMIESFVKSKVFDNNDIDYDGRIVTMCGIVTRVKKTITKKGLSMGYATLE 1002

Query: 1022 EPAKEYEANFFP 1033
            +   E+E   FP
Sbjct: 1003 DYDGEFECVIFP 1014


>gi|241761529|ref|ZP_04759616.1| DNA polymerase III, alpha subunit [Zymomonas mobilis subsp. mobilis
            ATCC 10988]
 gi|241373837|gb|EER63370.1| DNA polymerase III, alpha subunit [Zymomonas mobilis subsp. mobilis
            ATCC 10988]
          Length = 1174

 Score = 1014 bits (2623), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/1047 (44%), Positives = 639/1047 (61%), Gaps = 32/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FV L++ S +++LEGA+   +I         PA  I D N L+  + FS     
Sbjct: 1    MPYTP-FVPLRIFSGFTMLEGAIEPKDITQHAKKMGFPAAGICDRNGLYGVMTFSDSGKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPIIG  L +          +       +  + L     +GY  L  LVS  +L   
Sbjct: 60   DGVQPIIGSLLAVA---RPLRGGEASGQELKIDWLSLYAQDEDGYNNLCALVSHAHLGRP 116

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    + + +L E  ++GL+ LTGG  G + R         AE  L   +K+F DRLY+
Sbjct: 117  LELPPHVSMEFL-EQHSQGLLALTGGKEGALARLMAEEQQSEAEAYLTLLQKIFPDRLYI 175

Query: 185  NLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R          + ++ LAY  ++PLVATN   FL  + + AHD ++ +A S  V   
Sbjct: 176  ELSRRSEEIEEAAEEGLIDLAYDRDIPLVATNPVCFLEADFHPAHDAMLCIADSAYVDSP 235

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR   +P+ ++K+  EM  +F D+PEA++N++ +A+RC+    V  PILP          
Sbjct: 236  DRRHSSPEAWMKSGEEMARLFEDIPEAIQNSLVVAQRCAVAAPVRKPILPSLAGD----- 290

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ E   LR  A AGLE RLA          + Y +RL +ELN+I  M F GYFLIVADF
Sbjct: 291  REGETLMLRKDAWAGLEARLAAMTTP--VDRKAYEERLQYELNIIENMGFPGYFLIVADF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N IPVGPGRGSGAGSV A+ALTIT++DPLR  LLFERFLNP+R+SMPDFDIDFC
Sbjct: 349  IKWAKSNQIPVGPGRGSGAGSVVAWALTITNLDPLRLGLLFERFLNPERVSMPDFDIDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RR EVI YVQ+KYG + VAQIITFG ++A+A L+D GR LQM Y QVDRL KL+P+  
Sbjct: 409  ETRRSEVISYVQHKYGLDHVAQIITFGRMKARAVLKDTGRVLQMSYGQVDRLAKLVPSQA 468

Query: 484  AHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            + P +L  A+        A   +  V RLL+++ KLEGL RH+STHAAG+VIGDRPL QL
Sbjct: 469  SDPWTLDRALNGVPEIASAYENEEDVHRLLDLAMKLEGLPRHSSTHAAGVVIGDRPLHQL 528

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD RSD PVTQF+MK++EK GL+KFDFLGLKTL++L K++  L  RGV+VDL  IP
Sbjct: 529  VPLYRDPRSDFPVTQFDMKYVEKTGLVKFDFLGLKTLSVLNKAVQMLKARGVEVDLDHIP 588

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD   + LL    T+G+FQLES GMR+ L  ++P   EDIIALV+LYRPGP+DNI  + 
Sbjct: 589  LDDEAVFELLKQGDTVGVFQLESEGMRRTLAAVKPTRFEDIIALVALYRPGPMDNIPSFG 648

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RKNG E+IV  HPL++P+LKET G+I+YQEQVMQ AQ+L+GYSL EAD+LRRAMGKKI+
Sbjct: 649  ARKNGGEEIVYPHPLLEPVLKETYGIIVYQEQVMQAAQVLAGYSLGEADLLRRAMGKKIQ 708

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EMD Q+ RF+ G+ K+ I++  A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K H
Sbjct: 709  SEMDAQRSRFVEGSKKHDITENQANQLFDLIDKFAGYGFNKSHAAAYALVAYQTAWLKAH 768

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            Y  EF AA+M  +M   +K++ F  D R+  ++ +PP +N    DF V D  + Y+L A+
Sbjct: 769  YRAEFYAAAMCFDMALTDKLQVFVDDMRRSGLRYLPPDINRSQSDFTVEDGCVRYALGAL 828

Query: 843  KGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGVG      I  E   +  F SL+DF +R++ + LNRR LESL  AGA D  G  R  +
Sbjct: 829  KGVGEKAMDDICQEREKNGAFKSLDDFANRINPEHLNRRQLESLASAGAFDSLGVDRCAV 888

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             QS + I   A  + + R +    +F  E+      I L +  + + + R   E+   GF
Sbjct: 889  KQSSEMIIGTAANIHRMRKSGQGGLFGMEEMAM-PSIKLPEDKIWSLTERMNAEKEAFGF 947

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATI--------------RGNNI--RLAAMVVSKQ 1005
            +FS HP+D Y+ +L  + I+   +                   R   I  ++AAM+   +
Sbjct: 948  FFSSHPIDNYRSLLSGLRIRSRADINRLAPPSYPQDDENPQDYRKKRIATQMAAMIEDVR 1007

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + + +G R   V  S+ + ++ A+ F
Sbjct: 1008 WRDSARGRRYMMVAASDASGQFFASCF 1034


>gi|225351454|ref|ZP_03742477.1| hypothetical protein BIFPSEUDO_03049 [Bifidobacterium
            pseudocatenulatum DSM 20438]
 gi|225157798|gb|EEG71081.1| hypothetical protein BIFPSEUDO_03049 [Bifidobacterium
            pseudocatenulatum DSM 20438]
          Length = 1196

 Score = 1014 bits (2622), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1084 (32%), Positives = 563/1084 (51%), Gaps = 68/1084 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S +FV L  H+ YSLL+GA  + +++ +      PA+ ITD  N+  A E    A  
Sbjct: 1    MATSGNFVQLHNHTHYSLLDGASKIPDLVRRAKELNMPAVGITDHGNMHGAYEMWSTAVK 60

Query: 65   AGIQPIIGCQLDIDMQD--------------NLKMTNQGKTPFPT-------VPSIVLLV 103
             G++PIIG +  +  +               N  +  Q +   P        +  + +  
Sbjct: 61   EGVKPIIGIEAYVTPETARQDQTRVSWDTNWNPDIDPQHRRRNPNDVSGGGLITHLTMWA 120

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
             T EG   L++  +   L  +  +  R+    L +  ++G+I  +G  SG I        
Sbjct: 121  ETDEGLVNLMKASTDANLEGRVMRYPRMDKEILAKY-SKGIIASSGCPSGIIQTRLLLGQ 179

Query: 164  SQVAEKRLLTFKKLF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLS 221
               A +     + +F  D  Y+    H    ++     ++ +A     PL+ATN+S ++ 
Sbjct: 180  FDEALRAAGELQDIFGRDNFYIEFMDHGLKIEKQVTDGLLDIAKKLNAPLLATNDSHYVR 239

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARR 280
             ED  + D ++ +   + + +  R +     +YLK+  EM  +F D+PEA +NT+EIA R
Sbjct: 240  AEDAGSQDAMLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDIPEACDNTLEIAER 299

Query: 281  CSFILQVHAP--ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
            C+ +   H     +P+F   E  D    E +    K   GLE R        G+   +  
Sbjct: 300  CNVMFDDHEDGAFMPQFDCPEGWD----ETSLFLKKVEEGLERRY------DGHPPIEVL 349

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            ++ D+E  VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP+
Sbjct: 350  KQADYECGVICQMQFCGYFLVVADYINWAKSHGVMVGPGRGSAAGAMVAYAMGITELDPI 409

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
            +  L+FERFLNP+R+S+PD D+DF  D R  V+ YV +KYG ++VAQ + +G+++ K AL
Sbjct: 410  KHGLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGDKYGRDKVAQCVIYGTIKTKQAL 469

Query: 459  RDVGRALQMPYSQVDRLCKLIP-------NDPAHPV---SLQAIADDSRFREARLADPSV 508
            +D  R +   +S  +R+ K +P       + P H +   S +  A+   FRE   +DP V
Sbjct: 470  KDSARIMGYEFSMGERITKALPPAQTGGKDIPLHDIFEPSSKRYAEAREFRELYDSDPDV 529

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
             R+ + +  +EGL R    HA   ++G  P+S   P+  +       T       E  GL
Sbjct: 530  KRVTDEAMGIEGLIRQTGVHACATIMGSEPISNTSPL-LERTDGTVTTTLEYHTCETLGL 588

Query: 569  IKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            +K DFLGL  LT+++ +L+ + A    ++D + IP DD  TY LL+   TLG+FQL+S G
Sbjct: 589  VKMDFLGLSNLTVIRDTLNNIEANGKTRIDHTKIPLDDRATYDLLSRGDTLGVFQLDSDG 648

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPM 681
            MR  L+ ++P+   DI AL++LYRPGP+D      Y  RKNG +KI  IHP     +  +
Sbjct: 649  MRSLLKTLKPNNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEV 708

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L ET G+I+YQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G 
Sbjct: 709  LDETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGY 768

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            S+  A  ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K
Sbjct: 769  SQEAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDK 828

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-- 859
               +  +AR+  IQ++ P VN    ++    + + + L AI+ VG      I++   +  
Sbjct: 829  TALYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGKAAVDAIVKERENDH 888

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
              + +  DF  RV  + LNRR++ESL+ AGA D    +R  L    +        +++ +
Sbjct: 889  GKYVNFPDFIRRVPMEALNRRLVESLIKAGAFDSIDPNRRALFTIHEAAINSVVGLKRKQ 948

Query: 920  TNKHENIFAHEKGTFSDK-------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
                 ++F+  +    D        + +      +   +   E+ +LG Y S HPL   +
Sbjct: 949  AEGQFDLFSDLEDAGEDDAGMGDAMVNVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQ 1008

Query: 973  PI---LRKMGIKGYEESVA-TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             I   LR+M I    +  A    G  + +A ++ +  ++ ++KG+    VT  +     +
Sbjct: 1009 SILVSLREMSIAHLIDRAANMPDGQQVTVAGLITNVDRRMSKKGNPWAIVTIEDLESSIQ 1068

Query: 1029 ANFF 1032
              FF
Sbjct: 1069 CMFF 1072


>gi|84500130|ref|ZP_00998396.1| DNA polymerase III, alpha subunit [Oceanicola batsensis HTCC2597]
 gi|84392064|gb|EAQ04332.1| DNA polymerase III, alpha subunit [Oceanicola batsensis HTCC2597]
          Length = 1134

 Score = 1014 bits (2621), Expect = 0.0,   Method: Composition-based stats.
 Identities = 493/1025 (48%), Positives = 665/1025 (64%), Gaps = 51/1025 (4%)

Query: 41   QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
             PA+A+TDTNN+FSALEFS  A   GIQPIIGCQ+D+   D       G+ P    P +V
Sbjct: 1    MPAVAVTDTNNMFSALEFSVTASGEGIQPIIGCQVDLMYLDRQ----PGEKPKAPAP-VV 55

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            LL  +  GY+ L+ L S +YL   G Q  ++ L  L+E  +  +I LTGG  GP+     
Sbjct: 56   LLAQSEAGYENLMRLNSCLYLTKPG-QLPQVTLDELREF-SGDVICLTGGPDGPVGMLLQ 113

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY------DRYRESQVVQLAYTHELPLVAT 214
                  A+  +   +++FGDRLYV LQRH G       +R  E   V++AY  ELPLVAT
Sbjct: 114  ARQRPAAQTLMDRLREMFGDRLYVELQRHPGEGGLPEKERLTERGFVEMAYAMELPLVAT 173

Query: 215  NNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALEN 273
            N+  F  E  YEAHD L+ +A    V Q++ R R+T  HY K   EM ++F+DLPEALEN
Sbjct: 174  NDVYFPKEGMYEAHDALICIADGAYVDQQEPRRRLTAQHYFKTPEEMATLFADLPEALEN 233

Query: 274  TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
            TVEIARRC+F+     PILP+F + E          ELR  A AGL+ RLA   I     
Sbjct: 234  TVEIARRCAFMAYRRDPILPKFADDEV--------AELRRMANAGLQARLA--VIPHAVS 283

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
             ++Y++RLDFEL +I  M F GYFLIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTIT
Sbjct: 284  PEEYQERLDFELGIIEGMGFPGYFLIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTIT 343

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            D+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L 
Sbjct: 344  DLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALL 403

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLL 512
            +KAA+RD+GR LQMPY QVDRL K+IP +   PVS+  A+  + R R     +  V RLL
Sbjct: 404  SKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSISDALKQEERLRAEARNEEVVKRLL 463

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            +   ++EGL R+ASTHAAG+VIGDRPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFD
Sbjct: 464  DYGMEVEGLLRNASTHAAGVVIGDRPLDRLVPLYQDPRSDMPATQFNMKWVEQAGLVKFD 523

Query: 573  FLGLKTLTLLQKSLDFLAQ------------------RGVKVDLSLIPFDDHETYHLLTT 614
            FLGLKTLT++Q +++ +                     G +  ++ IP DD +TY L + 
Sbjct: 524  FLGLKTLTVIQNAIEQIHAGGRDLHTAADGAQIYEPFPGAENQINAIPLDDAKTYELYSR 583

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
              T+ +FQ+ESSGM  AL+ M+P CIEDI+ALV+LYRPGP++NI  Y   KNG+ +I S+
Sbjct: 584  AKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPMENIPTYCEVKNGQREIESV 643

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            HPLID +L+ETQG+I+YQEQVMQIAQ ++GY+L  AD+LRRAMGKKIKE MD ++ +F  
Sbjct: 644  HPLIDHILEETQGIIVYQEQVMQIAQEMAGYTLGGADLLRRAMGKKIKEAMDAERPKFEK 703

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            GA++ G+ K  A  +F+LL KFA+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  
Sbjct: 704  GAAEKGVEKKKASEVFDLLEKFANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNC 763

Query: 795  EMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
            ++   EK+  + ++  +Q  +  +PP VN     F V D  + Y+L A+K VG    R +
Sbjct: 764  DIHLTEKLAIYFEEVKKQLGLPYIPPCVNRSDSAFTVKDGALVYALGALKNVGLDAMRLV 823

Query: 854  MEAS----ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            +E       DKPF +L DF  RV+ K++ +R LE +  AGA D    +R ++  SLD + 
Sbjct: 824  VEGRRVDGEDKPFVNLFDFARRVELKRVGKRPLEMMARAGAFDVLDPNRRRVFDSLDALV 883

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +Y+  + + + +   ++F  + G    +  L        + R   E + +GFY SGHPLD
Sbjct: 884  QYSAAIWEQKQSSQVSLFG-DAGEDLPEPRLSPVQDWLPAERLAEEFKAIGFYLSGHPLD 942

Query: 970  VYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             Y   L++  IK  +E      G     ++A +V  +Q++K+ +G+R  +V  S+    Y
Sbjct: 943  DYSAALKRKDIKTLDEVWQMASGGALIAKMAGVVAGRQERKSARGNRFAFVQISDRTGAY 1002

Query: 1028 EANFF 1032
            E   F
Sbjct: 1003 ECTVF 1007


>gi|15639656|ref|NP_219106.1| DNA polymerase III subunit alpha [Treponema pallidum subsp. pallidum
            str. Nichols]
 gi|189025894|ref|YP_001933666.1| DNA polymerase III subunit alpha [Treponema pallidum subsp. pallidum
            SS14]
 gi|6014994|sp|O83675|DPO3A_TREPA RecName: Full=DNA polymerase III subunit alpha
 gi|3322971|gb|AAC26567.1| DNA polymerase III, subunit alpha (dnaE) [Treponema pallidum subsp.
            pallidum str. Nichols]
 gi|189018469|gb|ACD71087.1| DNA polymerase III, subunit alpha [Treponema pallidum subsp. pallidum
            SS14]
 gi|291060035|gb|ADD72770.1| DNA polymerase III subunit alpha [Treponema pallidum subsp. pallidum
            str. Chicago]
          Length = 1170

 Score = 1014 bits (2621), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1031 (37%), Positives = 582/1031 (56%), Gaps = 24/1031 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS+YSLL+GA SL  ++    +  Q A+A+TD  N+F AL F +   A GI+ 
Sbjct: 5    SFVHLHVHSNYSLLDGASSLQRLVRTAKSLGQEALALTDHGNMFGALHFQKVCSAEGIKA 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +  +     +    T       +++L     GY+ L+ L S+ Y+        
Sbjct: 65   IIGCELYVAPESRFDRSE--HTIGRRYYHLIVLAKNETGYRNLMVLSSKAYIEGM-YYKP 121

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L +   EGLI L+   +G +         + AE+    ++ LF  D  ++ +Q 
Sbjct: 122  RVDDELLAQ-HAEGLICLSSCLAGQLPYLLLQGRKREAEEHARKYRALFGVDNYFIEVQD 180

Query: 189  HRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +  + +  +++LA    +PLV TN+  +  +ED  A D+L+ +      S  +R +
Sbjct: 181  HGLDEEKKVAPLLIELACRLGIPLVVTNDVHYAEQEDSVAQDILLCIGTKKNRSDPNRLK 240

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + YLK+  +M  +F   PE + NTV IA+RC+  +    P+LP +           
Sbjct: 241  FKTDEFYLKSSEKMAQLFPHYPEMVLNTVRIAQRCNVRIPQPGPLLPLYQIPHE---FSS 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +E+ +R+    GL  R A         +++ + R D+EL+VI RM F GYFLIV DFI W
Sbjct: 298  KEHYIRHLVHRGLYDRYA-------VVSEEIKARADYELDVIVRMDFVGYFLIVWDFITW 350

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+++IPVGPGRGSGA S+ AYAL ITDIDPLR+ LLFERF+NP+R+SMPDFDIDFC +R
Sbjct: 351  AKEHDIPVGPGRGSGASSIVAYALKITDIDPLRYKLLFERFMNPERISMPDFDIDFCFER 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV+ +YG++ V QIITFG+L+ KAA+RDVGR L +P S+V  + KL+P+DP   
Sbjct: 411  RQEVIEYVRARYGNDNVGQIITFGTLKPKAAIRDVGRVLDIPLSEVLMITKLMPDDPK-- 468

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            ++ +   +  +  + +  +P    L +I++KLE   R+ S HAAGIVIG   L+  VP+Y
Sbjct: 469  LTFKKAYESEQLAQMK-QEPRYAELFQIAEKLEDTNRNTSLHAAGIVIGKTALTDYVPLY 527

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDLSLIPF 603
            +D ++    TQF M  IE  GL+K DFLGLKTLTL+Q++ + + ++        +S I  
Sbjct: 528  KDSKTGKISTQFGMDLIEDCGLVKMDFLGLKTLTLIQRTQNLVRRKGGKYTTFSISDISD 587

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D  T+ +L    +  +FQ ES GM+  L+  +P  +ED+IAL +LYRPGP+  I  Y  
Sbjct: 588  QDPTTFSMLAEGKSAAVFQFESRGMQGILKRAKPSKMEDLIALNALYRPGPMAFIDQYIE 647

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             K    KI    P ++ +L ET GVI+YQEQVMQ+AQ ++G+SL EAD+LRRAMGKK   
Sbjct: 648  SKRDPGKIKYPDPCLEDILSETYGVIVYQEQVMQVAQRIAGFSLGEADILRRAMGKKKLA 707

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M ++K+ F   A K G  K  A NIFE+L  FA YGFNKSHA AY+V++YQTA++K ++
Sbjct: 708  VMQEKKKEFAERAEKQGFDKKHAENIFEILIPFAGYGFNKSHATAYSVVAYQTAFLKANF 767

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P EF+AA+++ E+++ EK+  +  +A +  + I  P VN     F V +  I Y L  IK
Sbjct: 768  PAEFMAANLSNEINSAEKLPLYMAEAEKMGLSIQKPDVNASEPYFSVCEGCIVYGLLGIK 827

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            G+G   A  + +    + P+ S  +   RV +  LN++  E ++ AG  D FG +R  L 
Sbjct: 828  GLGEQVAFDVFDERIRNGPYTSFVEVLDRVPATSLNKKNAEIMIKAGCFDRFGVTRASLT 887

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              LD+  KY    +   +++  ++F         + T       +   R   E+ ++G+Y
Sbjct: 888  AHLDDAMKYVARKKAVTSSRQASLFDETDLGECSEYTFPVMEEWSQRERLRIEKELMGYY 947

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             SGHPLD Y+ ++ +               N   +  ++ +     T+ G  + + +F +
Sbjct: 948  ISGHPLDEYRSVIGEKATLDLGHIENARSENKYLIVGVLNAIHPYTTKSGKNMAFGSFED 1007

Query: 1023 PAKEYEANFFP 1033
                 +   FP
Sbjct: 1008 LHGSVDIVVFP 1018


>gi|171742474|ref|ZP_02918281.1| hypothetical protein BIFDEN_01586 [Bifidobacterium dentium ATCC
            27678]
 gi|306822385|ref|ZP_07455764.1| DNA-directed DNA polymerase III alpha subunit [Bifidobacterium
            dentium ATCC 27679]
 gi|309802136|ref|ZP_07696245.1| putative DNA polymerase III subunit alpha [Bifidobacterium dentium
            JCVIHMP022]
 gi|171278088|gb|EDT45749.1| hypothetical protein BIFDEN_01586 [Bifidobacterium dentium ATCC
            27678]
 gi|304554383|gb|EFM42291.1| DNA-directed DNA polymerase III alpha subunit [Bifidobacterium
            dentium ATCC 27679]
 gi|308221216|gb|EFO77519.1| putative DNA polymerase III subunit alpha [Bifidobacterium dentium
            JCVIHMP022]
          Length = 1195

 Score = 1014 bits (2621), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/1083 (31%), Positives = 549/1083 (50%), Gaps = 67/1083 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S +FV L  H+ YSLL+GA  + +++ +      PA+ ITD  N+  A E    A  
Sbjct: 1    MATSGNFVQLHNHTHYSLLDGASKIPDLVKRAKELNMPAVGITDHGNMHGAYEMWSTAVN 60

Query: 65   AGIQPIIGCQLDIDMQ---------------------DNLKMTNQGKTPFPTVPSIVLLV 103
            AGI+PIIG +  +  +                     ++ K      +    +  + +  
Sbjct: 61   AGIKPIIGIEAYVTPETARQDPTRVSWDTNWNPDLDPNHRKRNPNDVSGGGLITHLTMWA 120

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
             T EG   L++  +   L  +  +  R+    L +  ++G+I  +G  SG I        
Sbjct: 121  ETDEGLVNLMKASTDANLEGRVMRYPRMDKEILSKY-SKGIIASSGCPSGIIQTRLLLGQ 179

Query: 164  SQVAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLS 221
               A +     + +F  D  Y+    H    +R     ++ +A     PL+ATN+S ++ 
Sbjct: 180  FDEALRAAGELQDIFGRDNFYIEFMDHGLNIERQVTDGLLDIAKKLNAPLLATNDSHYVR 239

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARR 280
             ED  A D ++ +   + + +  R +     +YLK+  EM  +F DLPEA +NT+EIA R
Sbjct: 240  AEDAGAQDAMLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDLPEACDNTLEIAER 299

Query: 281  CSFILQVHAP--ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
            C+ +   H     +P+F   E  D    E +    K   GLE R        G    +  
Sbjct: 300  CNVMFDDHEDGAFMPQFDCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPIEVL 349

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            ++ D+E  VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP+
Sbjct: 350  KQADYECGVICQMQFCGYFLVVADYINWAKTHGVMVGPGRGSAAGAMVAYAMGITELDPI 409

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
            +  L+FERFLNP+R+S+PD D+DF  D R  V+ YV  KYG ++VAQ + +G+++ K AL
Sbjct: 410  QHGLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQAL 469

Query: 459  RDVGRALQMPYSQVDRLCKLIPN--DPAHPVSL--------QAIADDSRFREARLADPSV 508
            +D  R +   +S  +R+ K +P        + L        +  A+   FRE   +DP  
Sbjct: 470  KDSARIMGFDFSMGERVTKALPPAQTGGKDIPLHDIFDPASKRYAEAREFRELYDSDPDA 529

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
             R+ + +  +EGL R    HA   ++G  P++   P+  +       T       E  GL
Sbjct: 530  KRVTDEAMGIEGLIRQTGVHACATIMGSEPITNTSPL-LERTDGTVTTTLEYHTCETLGL 588

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            +K DFLGL  LT+++ +L+ +   G    D + IP DD  TY LL+   TLG+FQL+S G
Sbjct: 589  VKMDFLGLSNLTVIRDTLNNIEANGKDRIDHTRIPLDDKATYELLSRGDTLGVFQLDSDG 648

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPM 681
            MR  L+ ++P    DI AL++LYRPGP+D      Y  RKNG +KI  IHP     +  +
Sbjct: 649  MRSLLKTLKPSNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEV 708

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L ET G+I+YQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G 
Sbjct: 709  LDETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGY 768

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            S+  A  ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K
Sbjct: 769  SQEAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDK 828

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA--D 859
               +  +AR+  IQ++ P VN    ++    + + + L AI+ VG      I++      
Sbjct: 829  TALYLGEARRMGIQVLSPDVNESVFEYSAVGDVVRFGLGAIRNVGRNAVDDIIKERESGH 888

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
              + +  DF  RV    LNRR++ESL+ AGA D    +R  L    +        +++ +
Sbjct: 889  GKYVNFPDFVRRVPLSALNRRLVESLIKAGAFDSVDPNRRALFTIHEAAINSVVGIKRKQ 948

Query: 920  TNKHENIF------AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
                 ++F      A + G     +++      +   +   E+ +LG Y S HPL   + 
Sbjct: 949  AEGQFDLFSDLDDSAEQDGMGDAMVSVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQS 1008

Query: 974  ILRKMGIKGYEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            +L  +        +        G  + +A ++ +  ++ ++KG+    VT  +     + 
Sbjct: 1009 VLSSLREMSIAHLIDRAGTMPDGQQVTVAGLITNVDRRVSKKGNPWAIVTIEDLESSIQC 1068

Query: 1030 NFF 1032
             FF
Sbjct: 1069 MFF 1071


>gi|17546924|ref|NP_520326.1| DNA polymerase III subunit alpha [Ralstonia solanacearum GMI1000]
 gi|17429224|emb|CAD15912.1| probable dna polymerase III (alpha chain) protein [Ralstonia
            solanacearum GMI1000]
          Length = 1173

 Score = 1014 bits (2621), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1061 (38%), Positives = 604/1061 (56%), Gaps = 52/1061 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SP FVHL++HS YS+++G + L+  +   AAD   A+A+TD  N F  + F ++A   G
Sbjct: 2    NSPRFVHLRLHSEYSVVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI+G  + I   D                 ++LLV   +GY  L  L++R +L +Q +
Sbjct: 62   VKPIVGADVWITNHDE----------RDKPSRLLLLVRNKQGYLNLCMLLARAWLSNQHR 111

Query: 127  QSVRICLSWLQEIG------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                +   W  E G        GL+ L+G   G I  A    +  +A K    + ++F  
Sbjct: 112  GRAEVAPEWFGEPGVEEAPMATGLLALSGAMGGDIGMALANGNEALARKLATQWSQVFPA 171

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR           Q V+LA + +LP+VAT+   F++ +D+ AH+  + +A   +
Sbjct: 172  SFYIELQRAGNAGTEAYVQQAVKLAASMQLPVVATHPVQFMTPDDFTAHEARVCIAEGDL 231

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R T D Y K + EM ++F+D+P AL NT +IA+RC+  L++  P LP F   
Sbjct: 232  LANPRRTRRFTTDQYFKTQDEMCALFADIPSALANTAQIAQRCNLTLELGKPKLPLFPTP 291

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L + A  GLE R+A        +     +Y  RL+FE   I +M F G
Sbjct: 292  DGMSL----DDYLVHLAKDGLEKRMAVLFPDEAVREAKRPEYYARLEFETGTIIKMGFPG 347

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 348  YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD +
Sbjct: 408  PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467

Query: 476  CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP  P   V+++ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 468  AKLIPFKPGKLVTIEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527

Query: 535  GDRPLSQLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--- 590
                L+   P+Y     D   V+Q++   +E  GL+KFDFLGL TLT+L  +  ++    
Sbjct: 528  APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRTLD 587

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  + S IP  D   + +L T  T+ +FQLES GM+  L+  +PD  EDIIALV+LY
Sbjct: 588  PSRADWNCSHIPLTDKAAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  A
Sbjct: 648  RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM + +E F  GA+K+G+S   A  IF+L+ KFA YGFNKSHAAAYA
Sbjct: 708  DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVDFK 829
            +++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DAR    + ++PP +N     F 
Sbjct: 768  LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNGLAVLPPDINASQYRFT 827

Query: 830  -VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV A
Sbjct: 828  PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVE 946
            GA D    +R QLL S+          +K       ++F       +++    L   +  
Sbjct: 888  GAFDSLNANRAQLLVSIG--LAMEAAEQKAAAANQVSLFDLMGSDDAEQHRPELLDEAPW 945

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------------TIRGN 993
            ++  + + E++ LGFY SGH  D  +  +R+       +                +    
Sbjct: 946  STKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNNGGGYGSRDAR 1005

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032
            N  +A ++V  + + T++G  +  V   + ++    E   F
Sbjct: 1006 NKTVAGVIVGLRTQMTQRGK-MIVVMLDDGSQSEATEVTVF 1045


>gi|330466901|ref|YP_004404644.1| DNA polymerase III subunit alpha [Verrucosispora maris AB-18-032]
 gi|328809872|gb|AEB44044.1| DNA polymerase III subunit alpha [Verrucosispora maris AB-18-032]
          Length = 1177

 Score = 1014 bits (2621), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/1065 (33%), Positives = 554/1065 (52%), Gaps = 52/1065 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YS+L+GA  L ++  ++     PA+A+TD  N+  A +F ++A AAG+ P
Sbjct: 4    SFAHLHVHTEYSMLDGAARLKDLFAEVKRQGMPAVAMTDHGNMHGANDFYKQAMAAGVTP 63

Query: 70   IIGCQLDIDMQDNL--KMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            ++G +  +  +     K    G+        +       + +      G   L +L S+ 
Sbjct: 64   VLGIEAYVAPESRFHKKRVRWGRPEQKSDDVSGSGGYTHMTIWARNRVGLHNLFKLTSKA 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF- 178
            Y      +  R+    L E   +GL+  TG  SG +           A +    ++ +F 
Sbjct: 124  YTEGYFVKWPRMDAELLAE-HADGLMATTGCPSGEVQTRLRLGHDAQALEAAAKYQDIFG 182

Query: 179  GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +  ++ L  H    ++     ++++     +P V TN+S +  E   EAHDVL+ V   
Sbjct: 183  KENYFLELMDHGLDIEKQVRDGLLEIGRKLNIPPVVTNDSHYTHEAQSEAHDVLLCVQTG 242

Query: 238  TVVSQKDRPRVTP-DHYLKNRSEMVSIF-SDLP-EALENTVEIARRCSFILQVH-APILP 293
            + V+  +R +     +Y+K+  EM  +  SD+  E   NT+ +A +           ++P
Sbjct: 243  SNVADPNRFKFGGSGYYIKSADEMRGVDNSDVWLEGCRNTLLVAEKVDPTGMFEFHNLMP 302

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            RF   E +     EE+  R +  AGL  R   G        + +  + ++EL VI +M F
Sbjct: 303  RFPVPEGE----TEESWFRKETFAGLARRFPNGI------PEGHVVQAEYELGVIIQMGF 352

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL+VADFIQWAK   I VGPGRGS AGS+ AYAL ITD+DP+   L+FERFLNP+R+
Sbjct: 353  PSYFLVVADFIQWAKNQGIAVGPGRGSAAGSLVAYALGITDLDPIPHGLIFERFLNPERV 412

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD DIDF + RR EVI+YV +K+G ++VAQI TFG+++AKAA++D  R L  PY+  D
Sbjct: 413  SMPDVDIDFDERRRGEVIKYVTDKWGEDKVAQIATFGTIKAKAAIKDSARVLGYPYAVGD 472

Query: 474  RLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRH 524
            R+ K +P       + L+ I D            R    ++  V ++++ ++ +EGL R 
Sbjct: 473  RITKAMPPAVMGKDIPLEGIFDPKHPRYAEAGEIRGMYESEADVKKVIDTARGIEGLIRQ 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HAAG+++   P+   +P+ R     + +TQF+    E  GL+K DFLGL+ LT++  
Sbjct: 533  TGVHAAGVIMSAEPIIDHIPLMRRDSDGVIITQFDYPTCESLGLLKMDFLGLRNLTIIDD 592

Query: 585  SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++  +    G ++DL  +P DD   Y LL    TLG+FQL+   MR  L  M+PD  EDI
Sbjct: 593  AVKNIQLNHGKELDLLGLPLDDKGAYELLARGDTLGVFQLDGGPMRSLLRMMKPDNFEDI 652

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVMQ 697
             A+++LYRPGP+  D+   Y  RKNG ++I  IHP ++     +L  T G+I+YQEQV +
Sbjct: 653  SAVLALYRPGPMGVDSHTNYALRKNGLQEITPIHPELEEPLKEILAPTYGLIVYQEQVQR 712

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
             AQ+L+GY+L +AD+LRRAMGKK KE +DK+   F  G  + G S      ++++L  FA
Sbjct: 713  AAQILAGYTLGQADLLRRAMGKKKKEILDKEFIPFRDGCRERGYSDDAIQKVWDVLVPFA 772

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y FNK+H+AAY ++SY TA++K HYP E++AA +T   D+ +K+  +  + R+  IQ++
Sbjct: 773  GYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKMALYLSECRRMGIQVL 832

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876
            PP VNT    F      I + L AI+ VG      IM    +   +    DF S+VD+  
Sbjct: 833  PPDVNTSAGPFTPVGKEIRFGLGAIRNVGANVVTSIMRCRQEKGEYADFYDFLSKVDAVV 892

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             N++ +ESL+ AGA D  G+SR  LL    +       V++       ++F    G    
Sbjct: 893  CNKKTIESLIKAGAFDSMGHSRKGLLTVHADAIDAYADVKRKEAVGQYDLFGAGFGEAEV 952

Query: 937  KITLEKFS-----VENSSVRFENEQRVLGFYFSGHPLDVYKPIL---RKMGIKGYEESVA 988
                +          +   +   E+ +LG Y S HPL   + IL       I    E   
Sbjct: 953  ATNTQVMPTIGDGEWDKRDKLAFEREMLGLYVSDHPLFGLEHILGASADCTISALSEEGT 1012

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               G  + LA ++   Q++ T++G      T  + A   E  FFP
Sbjct: 1013 VPDGAVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1057


>gi|294011725|ref|YP_003545185.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S]
 gi|292675055|dbj|BAI96573.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S]
          Length = 1178

 Score = 1014 bits (2621), Expect = 0.0,   Method: Composition-based stats.
 Identities = 477/1041 (45%), Positives = 639/1041 (61%), Gaps = 31/1041 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L+V SS+++LEGA+    I  +  A   PA AITD N L+ ++ FS      G+QP
Sbjct: 5    GFVPLRVFSSFTMLEGAIDPKKIAKQAKALGFPAAAITDRNGLYGSMAFSDACKGEGVQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  + +   D            P    I L    A GY  L  LVS  +L    ++  
Sbjct: 65   IIGAMVGVSRPDRPANAA------PVHDWIALYAQDAAGYDNLCALVSMAHLDRPVEEVP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I L  L E  T+GLI LT G  G + R F  +    A       + LF  RLY+ + R 
Sbjct: 119  HISLDML-EGRTDGLIALTAGGEGALARLFAEDQPAAALAYAKRLEALFPGRLYIEICRR 177

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E +++ LAY  +LPLVATN + F     +EAHDV++ +A S  V   DR   
Sbjct: 178  FDPIEGKAEPELLDLAYARDLPLVATNPTCFAEPHFHEAHDVMLCIADSAYVETPDRRTS 237

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +PD ++K  +EM  +F DLPEAL NT+ +A+RC+       PILP           + E 
Sbjct: 238  SPDAWMKPAAEMKRLFDDLPEALANTLVVAQRCAVAAPKRKPILPSLAGD-----IEGEA 292

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR +A AGLE RLA+  IA     + Y +RL FE ++I +M F GYFLIVADFI+WAK
Sbjct: 293  KMLREQATAGLEARLAKAGIADEEARKPYFERLKFETDIIIQMGFPGYFLIVADFIKWAK 352

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              +IPVGPGRGSGAGSV A+ALTITD+DPL+  LLFERFLNP+R+SMPDFDIDFC+ RR 
Sbjct: 353  DKDIPVGPGRGSGAGSVVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFCETRRG 412

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVIRYVQ KYG + VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P  P +
Sbjct: 413  EVIRYVQQKYGADHVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWT 472

Query: 489  LQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L+  +   + FR     D  V RL++ + KLEG  RH+STHAAG+VIGDRPLSQLVP+YR
Sbjct: 473  LERSLNGVAEFRAEYDNDAQVKRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLSQLVPLYR 532

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++  LA RGV++DL+ + +DD  
Sbjct: 533  DPRSDMPVTQFDMKYVEGAGLVKFDFLGLKTLSVLQKAVQLLAGRGVEIDLNSLGWDDPA 592

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             Y LL    T+G+FQLES GMR+ L  ++P    DIIALVSLYRPGP+DNI ++  RKNG
Sbjct: 593  VYELLQRGDTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDNIPMFGRRKNG 652

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E+I   H L+ P+L+ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKKIK EMD 
Sbjct: 653  QEEIEYPHILLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKIKAEMDA 712

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+ RF+ G +K+ I+   A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K HYP EF
Sbjct: 713  QRARFVEGCAKSDIAAAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPAEF 772

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----------NRIY 836
             AASM  ++   +K+  F  D R+  +  + P +N    DF V               + 
Sbjct: 773  YAASMAFDIHLTDKLTVFVDDMRRMGLTCLAPDINRSLADFSVEAVDCEGDDPRLGFAVR 832

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y+L  +KGVG      ++ E  A   F SL+DF  R++ + LNRR LESL  AGA D   
Sbjct: 833  YALGGLKGVGEKAMEQLVAEREAGGSFKSLDDFADRIEPRLLNRRQLESLAAAGAFDGVH 892

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R  +  + + I   A    + R +    +F   +   +D + +      +++ R   E
Sbjct: 893  PDRAGVHAAAETILSVASSAAEARESGQGGLFGDVETPHAD-VRVPPHQTWSTADRMAQE 951

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKG----YEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
            +   GFYFS HP+D Y+ +    G K       E VA     N  +AAMV   + ++TR+
Sbjct: 952  KEAFGFYFSAHPVDRYRHLAEARGAKSYGAICAEPVAEGGRANGVMAAMVEDVRWRETRR 1011

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G+R    TFS+ + +++A+ F
Sbjct: 1012 GARYAAATFSDSSGQFQASCF 1032


>gi|299066194|emb|CBJ37378.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum CMR15]
          Length = 1173

 Score = 1013 bits (2620), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1061 (38%), Positives = 604/1061 (56%), Gaps = 52/1061 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SP FVHL++HS YS+++G + L+  +   AAD   A+A+TD  N F  + F ++A   G
Sbjct: 2    NSPRFVHLRLHSEYSVVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P++G  + I   D                 ++LLV   +GY  L  L++R +L +Q +
Sbjct: 62   VKPVVGADVWITNHDE----------RDKPSRLLLLVRNKQGYLNLCMLLARAWLSNQHR 111

Query: 127  QSVRICLSWLQEIG------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                I   W  E G        GL+ L+G   G I  A    +  +A K    + ++F  
Sbjct: 112  GRAEIAPEWFGEPGVEAAPMATGLLALSGAMGGDIGMALANGNEALARKLATQWSQVFPA 171

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR           Q V+LA + +LP+VAT+   F++ +++ AH+  + +A   +
Sbjct: 172  SFYIELQRAGNAGTEAYVQQAVKLAASMQLPVVATHPVQFMTPDEFTAHEARVCIAEGDL 231

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R T D Y K + EM ++F+D+P AL NTV+IA+RC+  L++  P LP F   
Sbjct: 232  LANPRRTRRFTTDQYFKTQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTP 291

Query: 299  ECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L   A  GLE R   L      +     +Y  RL+FE   I +M F G
Sbjct: 292  DGMSL----DDYLVQLAKEGLEKRMEVLFPDEAVREAKRPEYYARLEFETGTIIKMGFPG 347

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 348  YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD +
Sbjct: 408  PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467

Query: 476  CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP  P   V+L+ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 468  AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527

Query: 535  GDRPLSQLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
                L+   P+Y     D   V+Q++   +E  GL+KFDFLGL TLT+L  +  ++    
Sbjct: 528  APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587

Query: 594  V---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  + S IP  D   + +L T  T+ +FQLES GM+  L+  +PD  EDIIALV+LY
Sbjct: 588  PSKADWNCSHIPLTDKAAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  A
Sbjct: 648  RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM + +E F  GA+K+G+S   A  IF+L+ KFA YGFNKSHAAAYA
Sbjct: 708  DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPSVNTPCVDFK 829
            +++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DAR  N + ++PP +N     F 
Sbjct: 768  LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNALAVLPPDINASQYRFT 827

Query: 830  -VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV A
Sbjct: 828  PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVE 946
            GA D    +R QLL S+          +K       ++F       +++    L   +  
Sbjct: 888  GAFDSLNANRAQLLVSIG--LAMEAAEQKAAAANQVSLFDLMGSDDAEQHRPELLDEAPW 945

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------------TIRGN 993
            ++  + + E++ LGFY SGH  D  +  +R+       +                +    
Sbjct: 946  STKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNNGGGYGSRDAR 1005

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032
            N  +A ++V  + + T++G  +  V   + ++    E   F
Sbjct: 1006 NKTVAGVIVGLRTQMTQRGK-MIVVMLDDGSQSEATEVTVF 1045


>gi|116327113|ref|YP_796833.1| DNA-directed DNA polymerase, alpha subunit [Leptospira borgpetersenii
            serovar Hardjo-bovis L550]
 gi|116119857|gb|ABJ77900.1| DNA-directed DNA polymerase, alpha subunit [Leptospira borgpetersenii
            serovar Hardjo-bovis L550]
          Length = 1176

 Score = 1013 bits (2620), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1035 (36%), Positives = 590/1035 (57%), Gaps = 28/1035 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL +H++YS+L+GA+ +  ++  +  +   ++A+TD  N+F A+EF  +A   GI+P
Sbjct: 7    DFAHLHLHTNYSMLDGAIRIKELMQHVKENGMSSVAMTDHGNMFGAVEFYNEATKQGIKP 66

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +   +  + T   K    +   ++LL    EGY+ LI L S+ Y      +  
Sbjct: 67   IIGSEFYVSP-NRKQETEMVKIADGSAYHLILLAKNEEGYKNLIRLSSKSYTEG-FYKKA 124

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            RI    L +    GL+ LT   +G ++R         + +      ++F  +  Y+ +Q 
Sbjct: 125  RIDYDLLAQ-HNGGLVCLTACLAGEVNRKILEGKIDESFQLAGKLNEIFRKEDFYMEIQN 183

Query: 189  HRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++   + Q+        +PLV TN+S FL ++D EA D+L+ +     ++      
Sbjct: 184  HGIPEQMTVAKQIYDFGKRTGIPLVVTNDSHFLKKDDQEAQDILLRIGMQKRITDPMEFG 243

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + Y+K+  EM  +F ++PEA  NT+EI+ +    LQ    +LP F   E  D     
Sbjct: 244  FNGEFYVKSPDEMARVFPEIPEAFYNTLEISNKVDLKLQFGNYLLPEFEVPEGYDA---- 299

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++ L      G+  +           + + + R+ FELN I  MKF+GYFLIV D+I +A
Sbjct: 300  DSYLEKLIWEGIGRKYPN-------LSPEIKDRVVFELNTIKNMKFAGYFLIVQDYINYA 352

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N IPVGPGRGS AGS+ AYAL IT+++PL+ +LLFERFLNPDR  MPD D DFC +RR
Sbjct: 353  KRNGIPVGPGRGSAAGSIVAYALGITNVEPLQHNLLFERFLNPDRKDMPDIDTDFCVERR 412

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI Y++ +YG E+V QIITF SL AKAAL+DV R L +P+ + + + K  PN     +
Sbjct: 413  EEVINYIRRRYGEEKVGQIITFNSLAAKAALKDVARVLNLPFGEANEMTKAFPNKLGMSI 472

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+   S  +     D    ++  I+Q+LEG YR    HAAG+VI   PL ++VP+  
Sbjct: 473  -AEALTTSSELKNFSEKDDINHKIFAIAQRLEGNYRQPGRHAAGVVISPYPLEEVVPLST 531

Query: 548  DVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLI 601
                + P     VTQ++   +E  GLIK D LGLK LT L  ++  +  +RGV++DL  I
Sbjct: 532  VAEKERPGSRSIVTQYDKNNLESIGLIKMDILGLKNLTTLDYAIKLIERRRGVRIDLDEI 591

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
            P++D  TY LL    TLGIFQLES+G+   +   Q +  ++I+AL++LYRPGP+   ++ 
Sbjct: 592  PYNDANTYALLRKANTLGIFQLESTGITDLVAKSQVNNFDEIVALIALYRPGPMGEGMLD 651

Query: 661  -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y +RK+G++++   HP  +P+LKET GV +YQEQVM I++++ G+S+ ++DVLR+AM K
Sbjct: 652  EYLDRKSGRKQVTYPHPSCEPILKETFGVPVYQEQVMSISRVVGGFSVGDSDVLRKAMAK 711

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  + M+K K +F+ GA K GI + +A ++FE L +F  YGFNKSH+ AYA+I+YQTA++
Sbjct: 712  KKADLMEKLKYQFVEGAVKQGIQEKVAKDLFEQLERFGGYGFNKSHSVAYAIITYQTAYL 771

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYS 838
            K +Y +E+L A +  +      I K+  +AR+  I+I+ P V+     F V D+    + 
Sbjct: 772  KANYTIEYLTALLASDHGKTTDIVKYINNAREMGIRILNPDVSESQASFNVIDDATIRFG 831

Query: 839  LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L+A+KGVG T A  I+EA      F +L+DF   +D++ +N++V E+L+ AGALD FGY+
Sbjct: 832  LSAMKGVGETAANSIIEARDKAGNFKTLQDFALNIDTRLINKKVFEALIQAGALDSFGYT 891

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  L +S+D+I  +AQ  ++       ++F   + +F+  +  +         +   E+ 
Sbjct: 892  RKCLFESVDSILTFAQREQERTNEGQFSLFGVGESSFTLNLPKDAL-EWEIDEKLRREKA 950

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            + G Y SGHPLD Y+  L+ +     E+      G+ + +A ++ SK  K +++      
Sbjct: 951  IAGLYLSGHPLDKYEKQLKSLRTIPIEKFDNLKSGSKVEVAGIISSKNIKLSKRNEEFAN 1010

Query: 1018 VTFSEPAKEYEANFF 1032
                +   E E   F
Sbjct: 1011 FKLEDRTGEIECVAF 1025


>gi|271964395|ref|YP_003338591.1| DNA polymerase III subunit alpha [Streptosporangium roseum DSM 43021]
 gi|270507570|gb|ACZ85848.1| DNA polymerase III alpha subunit [Streptosporangium roseum DSM 43021]
          Length = 1173

 Score = 1013 bits (2620), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1062 (34%), Positives = 551/1062 (51%), Gaps = 47/1062 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL VH+ YS+L+GA  L  +  ++     PAIAITD  N+  A +F ++A  AGI
Sbjct: 2    SDSFVHLHVHTEYSMLDGAARLKQMFKQVGDLGMPAIAITDHGNMHGAYDFYKQATGAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMT----------NQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +P+IG +  +      +                +       + +    A+G   L++L S
Sbjct: 62   KPVIGIEAYVAPASRHQKKPVLWGEPHQKRDDVSAGGYYTHMTIWAKNAKGLTNLMKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            R Y     ++  R+    L E  +EGL+  TG  SG +           A      F++L
Sbjct: 122  RAYTEGFVRKWARMDAETLAE-HSEGLMATTGCPSGEVQTRLRLGQYDEALAAAAKFQEL 180

Query: 178  F-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  D  Y+ +  H    +R     + +++    +P + TN+S +  E D  +HD L+ + 
Sbjct: 181  FGRDNYYLEIMDHGLDIERRVRDGLTRISRDLNIPPLVTNDSHYTYESDATSHDALLCIQ 240

Query: 236  HSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVH-API 291
                ++  DR R     +Y+K   EM ++ S     E   NT+ +A +           +
Sbjct: 241  TGKQLADPDRFRFDGSGYYIKTADEMRAVDSSDLWAEGCRNTLLVAEKVDPTGMFGFKNL 300

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +P F   E D     EE+  R +   G+E R  +G        +++R +++FE+NVI +M
Sbjct: 301  MPTFPIPEGD----SEESWFRKEIWKGMERRFPEGVD------EEHRAQIEFEMNVILQM 350

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DPL   L+FERFLNPD
Sbjct: 351  GFPSYFLVVADFIMWAKNNGIRVGPGRGSAAGSLAAYALGITDLDPLPHGLIFERFLNPD 410

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR +VIRYV  KYG ++VA I TFG+++AKAA++D  R L  PY+ 
Sbjct: 411  RVSMPDVDIDFDERRRGDVIRYVTEKYGADKVAMIATFGTIKAKAAIKDAARVLGHPYAL 470

Query: 472  VDRLCKLIPND-PAHPVSLQAIADD--------SRFREARLADPSVDRLLEISQKLEGLY 522
             D++ K  P       + L  I D            R+    D  V   +++ + LEGL 
Sbjct: 471  GDKVSKAFPPAVMGKDIPLSGIFDKDHPRYNEAGELRKLYDEDVDVKSAMDLGRGLEGLI 530

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++    L+  +P+ R     + +TQF+    E  GL+K DFLGL+ LT++
Sbjct: 531  RQTGVHAAGVIMSSEVLTDYIPIMRRDSDGVIITQFDYPTCETLGLLKMDFLGLRNLTII 590

Query: 583  QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
               L  + A  G K+DL  +P DD +TY LL    TLG+FQL+  GMR  L  M+PD  E
Sbjct: 591  DDCLKMIEANTGTKIDLLKLPLDDRKTYELLGRGDTLGVFQLDGGGMRSLLRLMKPDNFE 650

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQV 695
            DI A+ +LYRPGP+  D+   Y  RKNG + I  IHP     +  +L  T G+I+YQEQV
Sbjct: 651  DISAVGALYRPGPMGADSHTNYALRKNGLQDITPIHPEFEESLQEILGTTHGLIVYQEQV 710

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M IAQ ++G+SL +AD+LRRAMGKK K E+DKQ E F  G   NG S      ++++L  
Sbjct: 711  MAIAQKVAGFSLGKADLLRRAMGKKKKSELDKQFESFEQGMKDNGYSAAAIKTLWDILLP 770

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            F+DY FNK+H+AAY ++SY TA++K +YP E++A  +T   D+ +K   +  + R+  I+
Sbjct: 771  FSDYAFNKAHSAAYGLVSYWTAYLKANYPSEYMAGLLTSVKDDKDKSALYLNECRRMGIK 830

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDS 874
            ++PP VN    DF      + + L+AI+ VG      I+ A  +K  F   +DF  +V  
Sbjct: 831  VLPPDVNDSDFDFTPRGTDVRFGLSAIRNVGGNVVDGIIAARREKTRFADFKDFLRKVPM 890

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
               N+RV+ESL+ AGA D F + R  L+   +        ++KN     +++F   +G  
Sbjct: 891  VVCNKRVIESLIKAGAFDSFAHERKGLVMVHEQAVDSIIGIKKNEAQGQDSLFGAVEGAE 950

Query: 935  SDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIR 991
                 ++      + +   + E+ +LG Y S HPL   + IL                  
Sbjct: 951  DQTFDVQIPPGEWDKTTLLQFEREMLGLYVSDHPLFGVEHILASGADCSIAALQDENRSD 1010

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            G  + +  ++   Q+K T+KG         +     E   FP
Sbjct: 1011 GQVVTVGGILSGVQRKVTKKGDTWVLTMLEDLEGAIEVMIFP 1052


>gi|87118611|ref|ZP_01074510.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121]
 gi|86166245|gb|EAQ67511.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121]
          Length = 1136

 Score = 1013 bits (2620), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1025 (39%), Positives = 597/1025 (58%), Gaps = 39/1025 (3%)

Query: 30   NNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQG 89
              +L   A    PA+A+TD NNL   + F + A  +GI+PI G  + I+    L+     
Sbjct: 2    KGLLGATAGLNMPAVAMTDENNLCGFVRFYKGAMGSGIKPICGADVVIEADGELE----- 56

Query: 90   KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
                     + LL  T +GY+ +IE++S+ Y L Q +    +  +W+ E   E +I+++G
Sbjct: 57   -----ENHRLTLLAMTNKGYKNIIEVISKGYQLGQFEGRPIVQRAWV-EAHQEDVILISG 110

Query: 150  GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHE 208
               G + +        +A+++L  + ++F +R YV LQR  R  +      VV LA    
Sbjct: 111  AQYGDVGQYLALQKPTLAKQKLERWMQIFPNRFYVELQRTSRIGEEDYIHAVVPLATELA 170

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDL 267
             P+VATN+  FL  ED+E+H+  + +     +    R  R + + YLK+  EM ++F D+
Sbjct: 171  CPVVATNDVRFLKREDFESHEARVCIHDGVTLDDPRRKKRYSEEQYLKSADEMQALFDDI 230

Query: 268  PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
            PEALENTVEIA+RC+  + +    LP F   E   +    +      +  GLE R     
Sbjct: 231  PEALENTVEIAKRCNVDVLLGKYFLPDFPVPEGMTM----DVFFSELSFKGLEERFDFLV 286

Query: 328  IAKGYH----AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
               G       Q+Y  RLDFELN+I +M F GYFLIV DFIQWAK N+IPVGPGRGSGAG
Sbjct: 287  KKYGDRIADKKQEYWDRLDFELNIINQMGFPGYFLIVMDFIQWAKDNDIPVGPGRGSGAG 346

Query: 384  SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            S+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDFC D RD+VI YV   YG + V
Sbjct: 347  SLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDNRDKVIDYVAQTYGRDAV 406

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
            +QIITFG++ AKA +RDV R    PYS  D+L KLIP +    ++ +A+ ++   +E   
Sbjct: 407  SQIITFGAMAAKAVVRDVARVQGKPYSLGDKLSKLIPFEIGMTLN-KALEEEPMLKEFIE 465

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563
             D     ++E++  LEG+ R+   HA G+VI    L+   P+Y +      VTQ++   +
Sbjct: 466  NDEEAGDVMEMALSLEGVVRNFGKHAGGVVIAPTKLTDFSPLYCEEDGSGLVTQYDKNDV 525

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
            E+AGL+KFDFLGLKTLT++  ++  +      +    +D++LI  +D  TY +L    T 
Sbjct: 526  EEAGLVKFDFLGLKTLTVVDWAMKNINDIQAREGKPALDITLIDLEDKPTYDMLQRAETT 585

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEK-----I 671
             +FQLES GM++ ++ + P   EDI+ALV+LYRPGP+ + +V  + NRK+G+ +      
Sbjct: 586  AVFQLESRGMKELIKKLLPSRFEDIVALVALYRPGPLGSGMVDDFINRKHGRSELAFPHP 645

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
               H  + P+L+ T G+I+YQEQVMQIAQ+L+ +SL  AD+LRRAMGKK  E M +Q+  
Sbjct: 646  DYQHDDLIPVLEPTYGIILYQEQVMQIAQVLARFSLGGADLLRRAMGKKKPEVMAEQRLL 705

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            F+ GA K  IS+ ++ NIF+L+ KFA YGFNKSH+AAYA++SYQTAW+K HYP  F+AA 
Sbjct: 706  FMEGAGKYDISEELSGNIFDLMEKFAGYGFNKSHSAAYALVSYQTAWLKHHYPAPFMAAV 765

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTA 850
            ++ +M N +KI  F ++ R   +Q+  P+VN     F V     I Y L AIKGVG    
Sbjct: 766  LSADMQNTDKIVIFIEECRAMKLQLELPNVNESVYKFTVNRAGAIVYGLGAIKGVGEGPI 825

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I +A  + PF+ + DFC R+  KK+N+RV+E+L+ +GALD  G +R  L  S+D   K
Sbjct: 826  EAITQAREEGPFEHIFDFCKRI-GKKVNKRVMEALIRSGALDQIGPNRATLFASIDEALK 884

Query: 911  YAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             A  + K+      ++F  A E+ T      +       S  R + E+  LG Y +GHP+
Sbjct: 885  RADRIAKDEDAGMMDLFGVAVEESTEGAYDEIGIQHEWPSRQRLDGEKDTLGLYVTGHPI 944

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            D Y+  +R+       +     RG++  +A ++V  +  K++KG  I +VT  + +   E
Sbjct: 945  DDYEKEIRRFARSRIVDLQP-KRGDSQIMAGLIVEMRITKSKKGGNIAFVTLDDRSARIE 1003

Query: 1029 ANFFP 1033
               FP
Sbjct: 1004 VTVFP 1008


>gi|239620845|ref|ZP_04663876.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp.
            infantis CCUG 52486]
 gi|239516421|gb|EEQ56288.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp.
            infantis CCUG 52486]
          Length = 1189

 Score = 1013 bits (2619), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1077 (32%), Positives = 553/1077 (51%), Gaps = 57/1077 (5%)

Query: 1    LTQYLEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
            + + +     +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E  
Sbjct: 1    MVERMADYGNNFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMY 60

Query: 60   QKACAAGIQPIIGCQLDIDMQ------DNLKMTNQGKTPFPT-----VPSIVLLVSTAEG 108
                A G++PIIG +  +  +        +    + +          +  + +     EG
Sbjct: 61   TNCVANGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEG 120

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
               LI+  S   L  +  +  R+    L    ++G+I  +G  SG I           A 
Sbjct: 121  LVNLIKASSVANLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEAL 179

Query: 169  KRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +    F+ +F  D  ++ L  H    +      ++ +A     PL+ATN+S ++  ED +
Sbjct: 180  RAAGEFQDIFGKDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQ 239

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            A D ++ +   + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ + 
Sbjct: 240  AQDAMLCINSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMF 299

Query: 286  QVHAP--ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
              H     +P+F   E  D    E +    K   GLE R        G    D  ++ D+
Sbjct: 300  DDHEDGAFMPKFPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADY 349

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            E  VI +M+F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+
Sbjct: 350  ECGVICQMQFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLI 409

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R+S+PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R
Sbjct: 410  FERFLNPERVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSAR 469

Query: 464  ALQMPYSQVDRLCKLIPN--DPAHPVSL--------QAIADDSRFREARLADPSVDRLLE 513
             +   +S  +++ K +P        +SL        +  A+   FRE   +DP   R+ E
Sbjct: 470  IMGYEFSVGEKITKALPPAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDTKRITE 529

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             ++ +EGL R    HA   ++G  P++   P+  +       T F     E  GL+K DF
Sbjct: 530  EAKGIEGLIRQTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDF 588

Query: 574  LGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL  LT++  +L  + A     +D + IP DD ETY L++   TLG+FQL+S GMR  L
Sbjct: 589  LGLSNLTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLL 648

Query: 633  EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQ 686
            + ++PD   DI AL++LYRPGP+  D+   Y  RKNG +KI  IHP ++     +L ET 
Sbjct: 649  KTLKPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETY 708

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+IIYQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +
Sbjct: 709  GLIIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEAS 768

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   + 
Sbjct: 769  QAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYL 828

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDS 864
             +AR+  IQ++ P VN    ++    + + + L AI+ VG      I+         F +
Sbjct: 829  GEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVN 888

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              DF  RV    LNRR++ESL+ AGA D    +R  LL   +        +++ +     
Sbjct: 889  FMDFIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQF 948

Query: 925  NIFAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            ++F+  +   ++      +T+      +   +   E+ +LG Y S HPL   + IL  + 
Sbjct: 949  DLFSDAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLR 1008

Query: 980  IKGYEESVATIR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   V   +    G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1009 EMSIAHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065


>gi|28198096|ref|NP_778410.1| DNA polymerase III subunit alpha [Xylella fastidiosa Temecula1]
 gi|182680724|ref|YP_001828884.1| DNA polymerase III subunit alpha [Xylella fastidiosa M23]
 gi|32129492|sp|Q87EY0|DPO3A_XYLFT RecName: Full=DNA polymerase III subunit alpha
 gi|28056156|gb|AAO28059.1| DNA polymerase III alpha chain [Xylella fastidiosa Temecula1]
 gi|182630834|gb|ACB91610.1| DNA polymerase III, alpha subunit [Xylella fastidiosa M23]
 gi|307579189|gb|ADN63158.1| DNA polymerase III subunit alpha [Xylella fastidiosa subsp.
            fastidiosa GB514]
          Length = 1193

 Score = 1013 bits (2619), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1078 (38%), Positives = 621/1078 (57%), Gaps = 74/1078 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             + SFVHL +H+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  L I              P      + LL     GY  L
Sbjct: 62   FALIKFYKAAETVGIKPISGADLLIA------------EPEHPPWGMTLLCRDHAGYLNL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
             +L+SR +L     +  V +   W+++   + L  L G  S    +      + +AE++L
Sbjct: 110  SQLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIGRHSLA-GQLLAKGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++ +FGD L++ L R         +Q  +Q+A    +P++A+N+  FL + D+ AH+ 
Sbjct: 168  ADWQHVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVQSDFLAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + +A   ++    RPR  +   YL++  EM ++F+D+P+AL+NT  +A+RC+  +++  
Sbjct: 228  RVCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFADIPDALDNTRTLAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +     + +    ++ +R ++  GLE RL +  +A G   +DY  RL+FEL+ I 
Sbjct: 288  YFLPNYPVPNDETL----DSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M FSGYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC +RRDEVI YV  KYG ERV+QIIT+G++ AKA +RDVGR L  PY
Sbjct: 404  PERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADD------SRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIP+     +       +      +   +   A+  V  LL ++++LE L R
Sbjct: 464  GLVDSVAKLIPSTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PL++  P++ +   +     PVTQF+   +E+ GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRGV-----KVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  + +R        VD++ +P DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINKRHARACIDPVDITALPLDDIPTYKDVFASGNTSAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +  RK+G ++ +   P    +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+    A  IF+L+
Sbjct: 704  QVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  +AR  N
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLN 823

Query: 814  IQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
            ++++ P++N     F+        Y L AIKGVG +    I++      P+ SL DFC+R
Sbjct: 824  LKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930
            V S KLNRR LE+++ AGALD  G +R  ++  L  + K  + + + R +   ++F + +
Sbjct: 884  VTSAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNAD 943

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE----- 985
             GT   ++ L +      +     E+  LG YFSGHP D Y+  ++++            
Sbjct: 944  PGTPVIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALER 1003

Query: 986  -SVATIRGN----------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +  RGN          N  LA +VVS ++    KG    +V   +     E + F
Sbjct: 1004 ILGSQQRGNGEKRTWQPEVNTILAGLVVSVRR----KGDSQVFVQLEDGRGRIECSAF 1057


>gi|149919879|ref|ZP_01908355.1| DNA polymerase III, alpha subunit [Plesiocystis pacifica SIR-1]
 gi|149819326|gb|EDM78759.1| DNA polymerase III, alpha subunit [Plesiocystis pacifica SIR-1]
          Length = 1255

 Score = 1012 bits (2618), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1122 (35%), Positives = 595/1122 (53%), Gaps = 103/1122 (9%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +T        F HL +H+ YSLL+GA+ +N++  K+      ++A+TD  N+F A++F Q
Sbjct: 5    MTGDAAGVDDFAHLHLHTQYSLLDGAIRMNDLCGKVKERGMKSVAMTDHGNMFGAVQFYQ 64

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            +A A G++PI GC+  I   D    T++          IVLL     GYQ L  LVS  +
Sbjct: 65   QAKAHGVKPIFGCEAYIADGDAPAKTDR------KNYHIVLLAKNEVGYQNLQRLVSYGH 118

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-G 179
            L      + RI    L+E  +EGL+ L+    G I R         A +R+  +  +F  
Sbjct: 119  LEG-FYYNPRIDRKTLRE-HSEGLVGLSACLGGHISRMITGGDMDGARERIREYADIFEP 176

Query: 180  DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               ++ LQ +         + + QL    ++P+VATN+  ++++ +  AH+VLM +    
Sbjct: 177  GSYFLELQPNGMELQEKVNADLAQLGRDLDVPIVATNDCHYVNQSEAYAHEVLMCMGMGR 236

Query: 239  VVSQKDRPRVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             ++ + R +   + +  K   +M   F   PEA+ N   IAR C+  L +  P LP F  
Sbjct: 237  TINDEKRLKHDCEEFFIKTPQQMWGYFERYPEAMHNAARIARMCNVELSLGKPELPDFKL 296

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
             E  D    E   LR  A  GL+ R+ +  A+ K      Y +RL+ EL +I  MKF GY
Sbjct: 297  PEGTD----EVEYLRKVAREGLDQRIRELRALGKAPDTDVYFERLERELGIIINMKFPGY 352

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV DFI+ AKK  +PVGPGRGSGAGS+ AY++ ITDIDP+++ LLFERFLNP+R+SMP
Sbjct: 353  FLIVWDFIKEAKKMGVPVGPGRGSGAGSLVAYSMRITDIDPMQYDLLFERFLNPERVSMP 412

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC DRR+EVI+YV + YG +RV QI TF SL+A+  LRDV R ++   ++ + L 
Sbjct: 413  DFDIDFCMDRREEVIQYVTDHYGKKRVGQIATFHSLKARGLLRDVCRVMEKLPAEANELA 472

Query: 477  KLIPNDPAHPVS--------------------------LQAIADDSRFREARLADPSVDR 510
            K++P  P   +S                          LQ     ++ R    ADP V +
Sbjct: 473  KMVPEGPKVSLSLCMADPKAIRAKMKKEPEKAGKLEGKLQIAEAATKLRLRCEADPGVKQ 532

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            +++I   LEGL RHA  HAAGIVIG+R L++ VP ++    D  VTQ+ M  +E+AGL+K
Sbjct: 533  IVDIGCSLEGLNRHAGMHAAGIVIGNRELTEHVPCFKA--DDKIVTQYTMNDVEQAGLVK 590

Query: 571  FDFLGLKTLTLLQKSLDFLA--------------QRGVKVDLSLIPFDDHETYHLLTTKG 616
            FDFLGLKTLT+++ ++D +                     D+  IP DD E Y +++   
Sbjct: 591  FDFLGLKTLTVIKHAVDQINGLEGPWRLDPTQQGTADKPFDIDTIPMDDAEVYAMISRGE 650

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSI 674
            T G+FQLES+G ++ L+ ++PD  EDIIA V+LYRPGP++  +V  +   K+G+ KI   
Sbjct: 651  TTGVFQLESTGFKKLLQKLKPDVFEDIIAAVALYRPGPLEGGMVDQFIECKHGRRKIEYP 710

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            H L+  +L+ET GV +YQEQVM  AQ+L+G+SL  AD++RRAMGKK  +EM++Q+  F+ 
Sbjct: 711  HELLADVLRETYGVFVYQEQVMLAAQILAGFSLGGADLMRRAMGKKKVKEMERQRALFVE 770

Query: 735  GASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            G    N I    A  IF+L+ KFA YGFNKSH+AAY +I+YQTA++K HYP  F+   MT
Sbjct: 771  GCESVNNIDAKKANEIFDLIDKFAGYGFNKSHSAAYGLITYQTAYLKHHYPEAFMCGLMT 830

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-------------------- 833
             + D  E + KF  +AR  +I ++PP VN    DF V                       
Sbjct: 831  CDKDKSENVVKFIAEARSMDITVLPPDVNESASDFNVVVRDRPELSEEELKKKKQLARKS 890

Query: 834  -------------------RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
                                I + + A++ VG      I+ A   + PF ++ + C RVD
Sbjct: 891  KKVRRRQAREDSRPEGKLLAIRFGMGAVRNVGGNAVDSILAAREEEGPFKNIFELCRRVD 950

Query: 874  SKKLNRRVLESLVFAGALD--CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
             K++N+R LE LV +GA D    G  R  ++ ++++  +  Q  +++R +    +F    
Sbjct: 951  LKRVNKRTLEGLVHSGAFDSVSEGQHRAGVVAAIESAVEQGQSSQRDRESGQGGLFDAFS 1010

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                      K        R  NE+  LGFY +GHPLD Y+  + +       E    + 
Sbjct: 1011 SDQVYVEEYPKVREWAPKQRLLNERDALGFYLTGHPLDRYQQDIDRHASVRIGELRKELA 1070

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            G  + L  ++   +Q  T+ G  +G+    +     E   FP
Sbjct: 1071 GQEVVLGGVITEMRQVTTKAGKTMGFFQLEDQFGRVEVIVFP 1112


>gi|319794191|ref|YP_004155831.1| DNA polymerase iii, alpha subunit [Variovorax paradoxus EPS]
 gi|315596654|gb|ADU37720.1| DNA polymerase III, alpha subunit [Variovorax paradoxus EPS]
          Length = 1172

 Score = 1012 bits (2618), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1050 (39%), Positives = 611/1050 (58%), Gaps = 45/1050 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   ++ ++   AAD+QPA+AITD NNLF A++F ++    G++P+
Sbjct: 2    FVHLRLHTEFSVVDGTNRIDEVIKAAAADKQPALAITDLNNLFGAVKFYKQGRGKGVKPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-- 128
            IG ++ I+          GK P   +  +VLLV   EGY  L EL++R +  + G+    
Sbjct: 62   IGAEIFIE--------GLGKEP-GVLTRLVLLVQNMEGYLSLSELLARAWTQNVGRGQSQ 112

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                L WL+E+ + GLI L+G  +GP+         + A +  L    +F  R Y+ LQR
Sbjct: 113  AACKLEWLEEL-SGGLIALSGAQAGPLGVPLLQGQGERAAELALKLAGMFPHRFYIELQR 171

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
              R  D       V+LA   +LP+VAT+   F   +DYEAH+  + ++   ++    R  
Sbjct: 172  AGRPEDEPHVIAAVKLAARLKLPVVATHPVQFAERQDYEAHEARVCISEGEILGNPRRVR 231

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC-DDIQK 305
            + T + Y K+ +EM ++F+D+P AL NTVEIA+RC+  L +  P LP F      + ++ 
Sbjct: 232  KFTEEQYFKSTAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFVSEGVRM 291

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++  R ++  GLEVRLA     A  +      Y +RL+FE+N I  M F GYFLIV D
Sbjct: 292  PIDDFFRQESFEGLEVRLAHLYPDAAKRDAERPRYVERLEFEINTILNMGFPGYFLIVGD 351

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK+N  PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 352  FIKWAKENGCPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDF 411

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI YV++KYG   V+QI TFG++ A+AA+RDVGR L M Y   D + KLIPN 
Sbjct: 412  CQGNRDRVIDYVKDKYGRNAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNK 471

Query: 483  PAHPVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            P   V+LQ              AI  + +  +    +  V  L+E++QKLEG+ R+   H
Sbjct: 472  PGMSVTLQYPPEKKIEGDKNNYAIEMEPQLAQRIEKEEEVRMLVELAQKLEGMTRNIGMH 531

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            A G++I    L+   P+Y+   SD  V+Q++   +E  GL+KFDFLGL TLT+L+ + DF
Sbjct: 532  AGGVLIAPGKLTDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAKDF 591

Query: 589  LAQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            +  R    +      IP  D  TY L +   T  +FQ ES GM+  L+  +P  +ED+IA
Sbjct: 592  IVARHKGQENFAFENIPLKDAATYRLFSEGKTEAVFQFESRGMQGMLKDARPTRLEDLIA 651

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            L +LYRPGP+D I  +  RK+G+E++   HP +  ML ET G+++YQEQVMQ AQ+L GY
Sbjct: 652  LNALYRPGPMDLIPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGY 711

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKS 764
            SL  AD+LRRAMGKK  EEM + +E+F +GA   +GI +  A  IF+L+ KFA YGFNKS
Sbjct: 712  SLGGADLLRRAMGKKKLEEMAEHREKFRAGALATHGIPQDKADEIFDLMEKFAGYGFNKS 771

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNT 823
            HAAAY++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA + F I   PP VN 
Sbjct: 772  HAAAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKLLFEDAQKNFGITFEPPDVNR 831

Query: 824  PCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRV 881
                F+   ++ I Y L A+KG G      ++ A  +  PF SL DFC R+D +++N+R 
Sbjct: 832  GNYRFEPVTDKVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINKRT 891

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITL 940
            +E+L+ AGA D    +R  L+ S+D   ++             +IF   E G+ + +  L
Sbjct: 892  VEALIKAGAFDAIQQNRAALIASVDRAFEF--ASATAANAAQVDIFGDAEHGSATAEPDL 949

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
               +      R   E+  +GFY SGH  D     +R+   +   + + +       +A +
Sbjct: 950  VDATPWGVKERLTLEKTAIGFYLSGHLFDEVSHEVRRFCKREIGDLLDSRDQQ--VIAGI 1007

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            V   +    ++G R+      + ++  +A 
Sbjct: 1008 VSDFRVINGQRG-RLAIFKLDDKSESIDAT 1036


>gi|322691499|ref|YP_004221069.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp.
            longum JCM 1217]
 gi|320456355|dbj|BAJ66977.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp.
            longum JCM 1217]
          Length = 1185

 Score = 1012 bits (2617), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1067 (32%), Positives = 551/1067 (51%), Gaps = 56/1067 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++P
Sbjct: 7    NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 66

Query: 70   IIGCQLDIDMQ------DNLKMTNQGKTPFPT-----VPSIVLLVSTAEGYQRLIELVSR 118
            IIG +  +  +        +    + +          +  + +     EG   LI+  S 
Sbjct: 67   IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 126

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L  +  +  R+    L    ++G+I  +G  SG I         + A +    F+ +F
Sbjct: 127  ANLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFEEALRAAGEFQDIF 185

Query: 179  -GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
              D  ++ L  H    +      ++ +A     PL+ATN+S ++  ED +A D ++ +  
Sbjct: 186  GKDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINS 245

Query: 237  STVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP--ILP 293
             + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H     +P
Sbjct: 246  GSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMP 305

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            +F   E  D    E +    K   GLE R        G    D  ++ D+E  VI +M+F
Sbjct: 306  KFPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQF 355

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+
Sbjct: 356  CGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERV 415

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            S+PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  +
Sbjct: 416  SLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGE 475

Query: 474  RLCKLIPN--DPAHPVSL--------QAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            ++ K +P        +SL        +  A+   FRE   +DP   R+ E ++ +EGL R
Sbjct: 476  KITKALPPAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIEGLIR 535

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
                HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  LT++ 
Sbjct: 536  QTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIH 594

Query: 584  KSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             +L  + A     +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++PD   D
Sbjct: 595  DTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFND 654

Query: 643  IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVM 696
            I AL++LYRPGP+  D+   Y  RKNG +KI  IHP ++     +L ET G+IIYQEQV 
Sbjct: 655  ISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQ 714

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
              A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  ++++L  F
Sbjct: 715  SAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPF 774

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            + Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  IQ+
Sbjct: 775  SGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQV 834

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDS 874
            + P VN    ++    + + + L AI+ VG      I+         F +  DF  RV  
Sbjct: 835  LSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPL 894

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
              LNRR++ESL+ AGA D    +R  LL   +        +++ +     ++F+  +   
Sbjct: 895  TALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGG 954

Query: 935  SDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
            ++      +T+      +   +   E+ +LG Y S HPL   + IL  +        V  
Sbjct: 955  AEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDR 1014

Query: 990  IR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +    G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1015 AKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061


>gi|213691712|ref|YP_002322298.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
            infantis ATCC 15697]
 gi|213523173|gb|ACJ51920.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
            infantis ATCC 15697]
          Length = 1185

 Score = 1012 bits (2617), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1067 (32%), Positives = 549/1067 (51%), Gaps = 56/1067 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++P
Sbjct: 7    NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 66

Query: 70   IIGCQLDIDMQ------DNLKMTNQGKTPFPT-----VPSIVLLVSTAEGYQRLIELVSR 118
            IIG +  +  +        +    + +          +  + +     EG   LI+  S 
Sbjct: 67   IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 126

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L  +  +  R+    L    ++G+I  +G  SG I           A +    F+ +F
Sbjct: 127  ANLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIF 185

Query: 179  -GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
              D  ++ L  H    +      ++ +A     PL+ATN+S ++  ED +A D ++ +  
Sbjct: 186  GKDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINS 245

Query: 237  STVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP--ILP 293
             + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H     +P
Sbjct: 246  GSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMP 305

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            +F   E  D    E +    K   GLE R        G    D  ++ D+E  VI +M+F
Sbjct: 306  KFPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQF 355

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+
Sbjct: 356  CGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERV 415

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            S+PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  +
Sbjct: 416  SLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGE 475

Query: 474  RLCKLIPN--DPAHPVSL--------QAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            ++ K +P        +SL        +  A+   FRE   +DP   R+ E ++ +EGL R
Sbjct: 476  KVTKALPPAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLIR 535

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
                HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  LT++ 
Sbjct: 536  QTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIH 594

Query: 584  KSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             +L  + A     +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++PD   D
Sbjct: 595  DTLKNIVANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFND 654

Query: 643  IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVM 696
            I AL++LYRPGP+  D+   Y  RKNG +KI  IHP ++     +L ET G+IIYQEQV 
Sbjct: 655  ISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQ 714

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
              A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  ++++L  F
Sbjct: 715  SAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPF 774

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            + Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  IQ+
Sbjct: 775  SGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQV 834

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDS 874
            + P VN    ++    + + + L AI+ VG      I+         F +  DF  RV  
Sbjct: 835  LSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPL 894

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
              LNRR++ESL+ AGA D    +R  L    +        +++ +     ++F+  +   
Sbjct: 895  TALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGG 954

Query: 935  SDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
            ++      +T+      +   +   E+ +LG Y S HPL   + IL  +        V  
Sbjct: 955  AEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDR 1014

Query: 990  IR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             R    G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1015 ARTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSVQCMFF 1061


>gi|226226143|ref|YP_002760249.1| DNA polymerase III alpha subunit [Gemmatimonas aurantiaca T-27]
 gi|226089334|dbj|BAH37779.1| DNA polymerase III alpha subunit [Gemmatimonas aurantiaca T-27]
          Length = 1165

 Score = 1012 bits (2617), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1047 (36%), Positives = 569/1047 (54%), Gaps = 37/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  HS YSLL+GA  +++++ +    + PA+AITD  N+ +A EF +KA  AGI+P
Sbjct: 2    SFVHLHCHSEYSLLDGANRIDDLIKRAQHFEMPALAITDHGNMHAAWEFQEKARKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +  +   D  +         P    +VLL     GY+ L++L S  Y         
Sbjct: 62   ILGMEAYVAPGDRRQRGRPAPGVKP-YYHLVLLARDIVGYRNLVKLTSLGYTEG-FYTKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +  +EGLI+ +   +G +      +    A +    + +LF  R ++ +Q H
Sbjct: 120  RIDRELLAQY-SEGLIVSSACLAGEVASHLMEDRVDQAREAAAWYAELFKGRYHLEVQAH 178

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +    ++++ LA    LP+VATN++ FL  ED++AHDVL+ +      + +DR + 
Sbjct: 179  TSEGQAILNAKILSLADELSLPVVATNDAHFLKHEDHDAHDVLLCIGLGKDRNDRDRMKY 238

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                Y K   E+ + F    + L NT+ IA             +P F   E       E 
Sbjct: 239  DDGLYFKAPDEIRTFFPGREDVLTNTLAIADAVDVQF-AKKYYVPSFPLPEG---VATEN 294

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L   A  G + R      A      + ++RLD+EL VI +  ++GYFLI ADFI+ A+
Sbjct: 295  DMLVQIATDGAKERYGDPLPA------NVQERLDYELGVITKTGYAGYFLITADFIKAAR 348

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               IPVGPGRGS AGS+ AYA  ITD+ PL F LLFERFLNP+R+SMPD D+DFC +RR 
Sbjct: 349  DRGIPVGPGRGSAAGSLVAYATRITDVCPLEFDLLFERFLNPERVSMPDVDVDFCFERRG 408

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV+ KYG + V QI+TFG+++++AA++DVGR L    ++ D L KLIPN P   ++
Sbjct: 409  EVIEYVRQKYGKDSVGQIVTFGTMKSRAAIKDVGRTLGFTPAETDALAKLIPNAPNFSLT 468

Query: 489  LQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            ++ AI      +     D    +LL+ + KLEGL RH   HAAG+VI   PL + VP+  
Sbjct: 469  VKEAIEQVPEVKAFYKNDERYRQLLDFAVKLEGLSRHTGVHAAGVVIAPGPLDEFVPICT 528

Query: 548  --------DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
                    D    + VTQ++M  +EKAG++K DFLGL TLT++  +L  + +R G  V L
Sbjct: 529  QASKGAGGDGDERVIVTQYDMTALEKAGMLKMDFLGLTTLTVITDTLRNIKERLGKDVVL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
                F D +TY +L    T G+FQ ES      L+ M+ D  +D++A  +L RPGP+D  
Sbjct: 589  EERGFTDEKTYQVLRAGRTGGVFQFESPLATDVLKRMRCDRFDDLVASNALLRPGPLDAG 648

Query: 659  VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +   Y  RK G+E  V   P ++P+L  T GVI YQEQVM+IAQ+L+G SL+EADVLR+A
Sbjct: 649  MHNVYIRRKRGEEPTVYALPELEPILSNTYGVITYQEQVMRIAQVLAGISLAEADVLRKA 708

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            +GKK  E + K+  +F   A   G SK I   +   +  F  YGFNKSH+ AY+V++Y T
Sbjct: 709  VGKKDAELIKKELGKFTEKAIARGYSKKIIEELAGQIETFGRYGFNKSHSVAYSVVAYHT 768

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRI 835
            A++KTHYP EF+AA ++  +   E++ K+  +AR+  I+++ P VN     F V GD RI
Sbjct: 769  AYLKTHYPAEFMAALLSSNIGKTEEVIKYIAEAREMGIEVLAPDVNESGWRFTVIGDKRI 828

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             + L AI+ VG      ++ A  +  F +L D C RVD +  N+RV E+LV AGA D  G
Sbjct: 829  RFGLGAIRNVGKGAIDSLLAARTEGAFPTLHDLCGRVDLRLCNKRVFEALVAAGACDTLG 888

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--------DKITLEKFSVEN 947
              R QLL +LD+    A   ++       ++F    G               L   ++ +
Sbjct: 889  GHRAQLLGALDHAISEASLQQEEAERGQGSLFGDLMGDAPGNGGGNNAAPQMLPNIAMWS 948

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             S R + E+ +LGFY SGHPL+ ++            +   T     + +  +V + +++
Sbjct: 949  ESERLQREKELLGFYISGHPLEPHRTECELFATSTVAKL-GTWTAEPVTIGVVVTAIRKQ 1007

Query: 1008 KTRK-GSRIGWVTFSEPAKEYEANFFP 1033
             +++ G+    +T  + +   E   FP
Sbjct: 1008 ISKRTGAEFARLTVEDFSGSSEVLVFP 1034


>gi|289450822|ref|YP_003474944.1| DNA polymerase III subunit alpha [Clostridiales genomosp. BVAB3 str.
            UPII9-5]
 gi|289185369|gb|ADC91794.1| DNA polymerase III, alpha subunit [Clostridiales genomosp. BVAB3 str.
            UPII9-5]
          Length = 1325

 Score = 1012 bits (2617), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1056 (35%), Positives = 575/1056 (54%), Gaps = 46/1056 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL GA  ++ +  +IA     A AITD   ++ ALEF Q      I+P
Sbjct: 3    DFVHLHMHTEYSLLSGANRISELPRRIAELGMSACAITDHGVMYGALEFYQACRKENIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ + +   L    +          ++LL     G + L +LV+  Y         
Sbjct: 63   IIGCEVYVALNGRL---AKDGVADRRTAHLILLAENNCGLRNLNKLVTLSYTEG-FYGKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L     EGLI L+G   G I  A        A +    ++ +F  +  ++ +Q 
Sbjct: 119  RVDHELLALYH-EGLIALSGCIEGEIPLALRRGDFAGACELARQYQDIFGSENFFLEMQA 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                ++    S ++++A    +P VATN+  ++ + D  AH++L+ +     ++ + RPR
Sbjct: 178  TGLPEQNMVNSGLIRIAKKLGIPPVATNDCHYMQQTDATAHEILLCIKTGKKLNDEHRPR 237

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +  D  Y+K+ SEM + F DLPEAL NTV IA RC    +     LP+F + E      +
Sbjct: 238  IGSDQLYIKSPSEMAAAFPDLPEALANTVRIAERCKAEFEFGVLHLPKFKQPEE---FSD 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L  K  AGLE RLAQ A A     + Y +RL +EL+VI  M ++ Y+LIV DFI +
Sbjct: 295  SVAYLTTKCRAGLERRLAQAAFA---PRETYEERLKYELSVINSMGYTDYYLIVWDFIDY 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+N I VGPGRGSGAGS+ A+ L IT+IDPLR++L+FERFLN +R+SMPDFDIDFC +R
Sbjct: 352  AKRNGIFVGPGRGSGAGSLAAFCLGITNIDPLRYNLIFERFLNAERVSMPDFDIDFCFER 411

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG ERV Q+ITFG++ AKA +RDV R L  P  + D+L K+IP      
Sbjct: 412  RQEVIDYVYRKYGTERVCQVITFGTMAAKAVVRDVARVLDYPLPETDKLAKMIPGVLGMT 471

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  ++  +     DP V +L++ +Q LEGL RHASTHAAG++I   P+    P+ 
Sbjct: 472  LK-KALNINADLKMLYEKDPQVRQLIDYAQILEGLPRHASTHAAGVIICGEPVVNYAPLA 530

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
            +    +  V Q+   +IE  GL+KFDFLGL+TLT+L+ +   +    G ++D   +   D
Sbjct: 531  K--NDEALVVQYTKNYIESIGLLKFDFLGLRTLTVLRDAAAAIKVNYGREIDFDQLDLAD 588

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             + +++L    T G+FQLESSGM   ++ ++P  +EDIIA +SLYRPGP++ I  Y   +
Sbjct: 589  EKVFNMLGRGETDGVFQLESSGMTSFIKELRPTSLEDIIAGISLYRPGPMEQIPRYVAAR 648

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +    I   HPL+ P+L+ T G I+YQEQVMQI + L+G+S+  AD++RRAM KK  +E+
Sbjct: 649  HNPALISYDHPLLRPILQVTYGCIVYQEQVMQIVRDLAGFSMGMADIVRRAMAKKKPKEL 708

Query: 726  DKQKERF-----------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
               +  F           + G   NG+ + +   IF  +  FA Y FNK HAA+YA+++Y
Sbjct: 709  ATYEGLFLFGGHDFKGNKVPGCIANGVEENVGRKIFNEVLAFAGYAFNKPHAASYAIVAY 768

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDN 833
             TAW++ +YP EF+AA +   + ++ K   + Q  RQ  I+++P +VN   V F   G N
Sbjct: 769  YTAWLRLYYPTEFMAAILNSFIGDLSKAAHYVQACRQLGIEVLPLNVNYSQVKFATEGKN 828

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +I ++L AIK VG    R ++ E  A+  F    DF  R  +  LNR++ ESL+ AGALD
Sbjct: 829  KIRFALGAIKNVGFGAIREVVAEREANGLFKDPGDFWRRTANLSLNRKMQESLIRAGALD 888

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENSSV 950
            CF   R +LL ++            +      ++F   +G      +         +S  
Sbjct: 889  CFNIDRARLLTAVVTYLNTVSAGSGSCLAGQFSLFDGPEGESISVAEPVYLPVKAFSSLE 948

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------------TIRGNNIRL 997
            +   EQ ++G Y +GHPL  Y+  +    +      +                 G++++ 
Sbjct: 949  KLMMEQELIGLYLTGHPLADYRAQVAAFSVADSSWLLPSVDEQGQVIDERRAADGDSVKF 1008

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             A V+S  ++ TR+ +++  +   +    +E   FP
Sbjct: 1009 MAFVLSVTERITRQSTKMARIVAEDFISRFEVVAFP 1044


>gi|322689545|ref|YP_004209279.1| DNA polymerase III subunit alpha [Bifidobacterium longum subsp.
            infantis 157F]
 gi|320460881|dbj|BAJ71501.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp.
            infantis 157F]
          Length = 1189

 Score = 1012 bits (2617), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/1077 (32%), Positives = 552/1077 (51%), Gaps = 57/1077 (5%)

Query: 1    LTQYLEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
            + + +     +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E  
Sbjct: 1    MVERMADYGKNFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMY 60

Query: 60   QKACAAGIQPIIGCQLDIDMQ------DNLKMTNQGKTPFPT-----VPSIVLLVSTAEG 108
                A G++PIIG +  +  +        +    + +          +  + +     EG
Sbjct: 61   TNCVANGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEG 120

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
               LI+  S   L  +  +  R+    L    ++G+I  +G  SG I           A 
Sbjct: 121  LVNLIKASSVANLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEAL 179

Query: 169  KRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +    F+ +F  D  ++ L  H    +      ++ +A     PL+ATN+S ++  ED +
Sbjct: 180  RAAGEFQDIFGKDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQ 239

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            A D ++ +   + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ + 
Sbjct: 240  AQDAMLCINSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLAIAERCNVMF 299

Query: 286  QVHAP--ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
              H     +P+F   E  D    E +    K   GLE R        G    D  ++ D+
Sbjct: 300  DDHEDGAFMPKFPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADY 349

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            E  VI +M+F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+
Sbjct: 350  ECGVICQMQFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLI 409

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R+S+PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R
Sbjct: 410  FERFLNPERVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSAR 469

Query: 464  ALQMPYSQVDRLCKLIPN--DPAHPVSL--------QAIADDSRFREARLADPSVDRLLE 513
             +   +S  +++ K +P        +SL        +  A+   FRE   +DP   R+ E
Sbjct: 470  IMGYEFSVGEKVTKALPPAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITE 529

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             ++ +EGL R    HA   ++G  P++   P+  +       T F     E  GL+K DF
Sbjct: 530  EAKGIEGLIRQTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDF 588

Query: 574  LGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL  LT++  +L  + A     +D + IP DD ETY L++   TLG+FQL+S GMR  L
Sbjct: 589  LGLSNLTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLL 648

Query: 633  EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQ 686
            + ++PD   DI AL++LYRPGP+  D+   Y  RKNG +KI  IHP ++     +L ET 
Sbjct: 649  KTLKPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETY 708

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+IIYQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +
Sbjct: 709  GLIIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEAS 768

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   + 
Sbjct: 769  QAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYL 828

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDS 864
             +AR+  IQ++ P VN    ++    + + + L AI+ VG      I+         F +
Sbjct: 829  GEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVN 888

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              DF  RV    LNRR++ESL+ AGA D    +R  L    +        +++ +     
Sbjct: 889  FMDFIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQF 948

Query: 925  NIFAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            ++F+  +   ++      +T+      +   +   E+ +LG Y S HPL   + IL  + 
Sbjct: 949  DLFSDAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLR 1008

Query: 980  IKGYEESVATIR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   V   +    G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1009 EMSIAHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065


>gi|297571263|ref|YP_003697037.1| DNA polymerase III subunit alpha [Arcanobacterium haemolyticum DSM
            20595]
 gi|296931610|gb|ADH92418.1| DNA polymerase III, alpha subunit [Arcanobacterium haemolyticum DSM
            20595]
          Length = 1182

 Score = 1012 bits (2617), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1066 (34%), Positives = 565/1066 (53%), Gaps = 53/1066 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+GA  +N ++ ++A  +QPA+AITD   LF A E  + A AAGI+P
Sbjct: 5    SFAHLHVHTDYSLLDGAAKINKLVAEVARLEQPAVAITDHGYLFGAYEMYKAATAAGIKP 64

Query: 70   IIGCQLDIDMQ-DNLKMTNQ----------GKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            IIG +  +         T Q            +       + LL     G   L  + S 
Sbjct: 65   IIGLEAYMTPGTSRFDQTRQLWGTPAQRSDDVSARGAYTHMTLLSENNTGMHNLFRMNSL 124

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L  Q  +  R+    L+     GLI   G  SG I           A K     + +F
Sbjct: 125  ASLEGQMGKWPRMDRELLETYHD-GLIGTAGCPSGEIQTRLRLGQWDEALKAAGELQDIF 183

Query: 179  -GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
              D  YV +  H    +R  ++ ++++A     PL+ATN+S ++  ED +  D ++ +  
Sbjct: 184  GKDNFYVEVMDHGLDIERRVQNDLLKIARMIGAPLIATNDSHYVKREDRDIQDAMLCINS 243

Query: 237  STVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPIL 292
             + +   DR +   D +Y+K+  EM   F DLPEA++NT+ +A RC+   Q        +
Sbjct: 244  GSTLMDPDRFKFDGDGYYIKSSEEMHRQFEDLPEAIDNTLVVAERCNVSFQTTADGISYM 303

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P F     +D    E +   N+  AGL  R        G      R+R D+E+ VI  M 
Sbjct: 304  PEFPVPPGED----ETSWFINQVEAGLLKRY------NGTVPAHVRERADYEVGVITSMG 353

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFL+V+D+I+WAKKN I VGPGRGSGAGS+ AYAL IT +DP++  LLFERFLNP+R
Sbjct: 354  FPGYFLVVSDYIKWAKKNGIRVGPGRGSGAGSMVAYALEITQLDPIKHELLFERFLNPER 413

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +S+PD D+DF   RRDEVI+YV+ KYG ++VAQ++T+G+++ K AL+D  R L MP+   
Sbjct: 414  VSLPDIDVDFDDRRRDEVIKYVEEKYGSDKVAQVVTYGTIKTKQALKDAARVLGMPFQMG 473

Query: 473  DRLCKLIPND-PAHPVSLQAIA--------DDSRFREARLADPSVDRLLEISQKLEGLYR 523
            D+L K +P D     ++++ I         +   FRE   ++    R+ + +  LEG+ R
Sbjct: 474  DQLTKALPPDVQGKSIAVKDIYNPEAARYNEAGEFREFVDSNAEAKRVFDFALGLEGMTR 533

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
                HA  +++    L+ ++P+ + ++    +TQF     E+ GL+K DFLGL  LT+++
Sbjct: 534  QTGVHACAVIMSSTALTDVIPIMKRLQDGAIITQFEYPQCEELGLVKMDFLGLSNLTVIE 593

Query: 584  KSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             +L  +   G +  ++  IP DD ETY LL    TLGIFQL+S GMRQ L+ M+PD   D
Sbjct: 594  GALTNIRNNGKEAPNIDEIPLDDVETYELLARAETLGIFQLDSPGMRQLLKQMKPDTFAD 653

Query: 643  IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVM 696
            I A+ +LYRPGP+  ++   Y  RKNG ++   IHP     ++ +L  T G+I++QEQVM
Sbjct: 654  ISAVSALYRPGPMGANSHTNYALRKNGLQEKTPIHPELATALEDILGNTHGLIVFQEQVM 713

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            +IAQ L+G++L +AD+LR+AMGKK  + + KQ + F  G   +G S      ++++L  F
Sbjct: 714  RIAQKLAGFTLGQADILRKAMGKKKADVLQKQFKGFAQGMRDHGYSDECINTLWDILVPF 773

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A Y FNKSH+ AYA+++YQTA++K HYP E++A+ +T   +N  K+  +  D R+  I++
Sbjct: 774  AQYAFNKSHSEAYALVTYQTAYLKAHYPSEYMASLLTSNQNNKTKVATYLADTRRMGIRV 833

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK 875
              P VN     +    N +   L++++ VG      I+E   +   + S +DF  +V + 
Sbjct: 834  NVPDVNKSMDVYSAVGNEVRVGLSSVRNVGKNVVDGIIETRKEKGEYTSFQDFLDKVPAA 893

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
             LN+R +E L+ AGA D  GYSR  L+   +   +    V++N      ++F        
Sbjct: 894  VLNKRAVECLIKAGAFDSLGYSRRALVSIHEEAIEAVLPVKRNEAGGQFDLFGGLGENNP 953

Query: 936  DK----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK---MGIKGYEESVA 988
                  + +      +   +   E+ +LG Y S HPL   +  L +     + G +    
Sbjct: 954  IAQSFNVEIPDLPEWDKKEKLNIERDMLGLYVSDHPLSGLEAFLDRVADHTVLGIQNDEN 1013

Query: 989  TIRGNNIRLAAMVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFFP 1033
             + G  + +A ++ S Q + + + G      T  +     E NFFP
Sbjct: 1014 PVDGQMVTVAGLITSVQTRISQKNGKTWATATIEDFTGSIEVNFFP 1059


>gi|254294080|ref|YP_003060103.1| DNA polymerase III subunit alpha [Hirschia baltica ATCC 49814]
 gi|254042611|gb|ACT59406.1| DNA polymerase III, alpha subunit [Hirschia baltica ATCC 49814]
          Length = 1145

 Score = 1012 bits (2616), Expect = 0.0,   Method: Composition-based stats.
 Identities = 477/1029 (46%), Positives = 658/1029 (63%), Gaps = 25/1029 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+V S+ SLL   +++  +      +  PA+AITD NN+F ALE S+     G+Q
Sbjct: 13   PRFVHLRVRSALSLLGSMITIKKLCKWTFENGFPAVAITDDNNMFGALELSETLAPMGVQ 72

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PII   L I  + N         P      + L      GY+ ++ L ++ +L      +
Sbjct: 73   PIIAITLHIYDRIN---------PAAEPTELALFAQNEAGYKNMMILTTKGFLESPSGGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                   L+   +EGLI  TGG +G + +       + A + LL   + F +RLYV LQR
Sbjct: 124  GVYLDDVLE--HSEGLICTTGGGNGEVTQLCAAGDEEGAREYLLKLNEAFPNRLYVELQR 181

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +   E  +V LAY  +LPLVATN + F+    ++AHD L+ +A ST VS +DRP+
Sbjct: 182  HGRLTEDKAEELLVDLAYELDLPLVATNEARFIKRAQHKAHDALLCIAGSTYVSVQDRPK 241

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +P+ Y+K   EM+++FSDLPEA+ENT EIARRCS+      PILP F   + D     E
Sbjct: 242  ASPEQYMKTEEEMINLFSDLPEAIENTCEIARRCSYRPAWRKPILPNFTGDDGD-----E 296

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL  +A  GL++RL+ G +      Q Y  RLDFELN+I +M F GYFLIV+DFI+WA
Sbjct: 297  GEELDRQAREGLKMRLSSGILY--EEEQVYWDRLDFELNIIRQMGFPGYFLIVSDFIKWA 354

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+++IPVGPGRGSGAGS+ A+ LTITD+DPLRF LLFERFLNP+R+SMPDFD+DFCQDRR
Sbjct: 355  KEHDIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQDRR 414

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI Y + KYG +RVA IIT+G+LQAKA +RDVGR  Q+P+ QVD+L KLIP +PA+P 
Sbjct: 415  HEVIEYTKRKYGADRVAMIITYGTLQAKAVIRDVGRVHQLPFGQVDKLSKLIPFNPANPP 474

Query: 488  SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +LQ AI  + +F++    +  V  L+E + +LEGLYR+A THAAG+VIGDRPL +L P+Y
Sbjct: 475  TLQEAIDGEPKFKQEMRENEDVRNLVETALELEGLYRNAGTHAAGVVIGDRPLVELSPLY 534

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            +D +SD+P TQFNMKW E  GL+KFDFLGLKTLT++Q++L F+   G ++      FDD 
Sbjct: 535  KDPKSDIPATQFNMKWAEHNGLVKFDFLGLKTLTVIQRALKFVISEGKQLTEKWHTFDDE 594

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            E Y LL++  TLG+FQLES+GMR  L  ++PDCIEDIIAL+SLYRPGP+ NI  Y  RK 
Sbjct: 595  EAYKLLSSGETLGVFQLESTGMRDTLRKVKPDCIEDIIALISLYRPGPMKNIDTYVARKE 654

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E+I  +H  + P+L+ET GVI+YQEQVM+IAQ+L+GYSL EAD+LRRAMGKK  EEM 
Sbjct: 655  GREEIDYLHDDLKPVLEETYGVIVYQEQVMRIAQILAGYSLGEADLLRRAMGKKKPEEML 714

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            KQK RF+ GA+K  +SK  A  IFEL+ +FA YGFNKSHAAAYAVI+YQTA++K  +PVE
Sbjct: 715  KQKVRFLEGAAKKDVSKERAEFIFELVNEFAGYGFNKSHAAAYAVIAYQTAYLKAKHPVE 774

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            FLA SM+L++ N EK+  F Q+ ++  I ++ P +     DF V D +IYY+L A+KGVG
Sbjct: 775  FLAGSMSLDLTNTEKLAAFFQETKRLKIPVVTPDITLCNADFDVRDQKIYYALGAVKGVG 834

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                  +  A  +KPF+ L DF  RVD +++N+RV ++L   G  D    +R +  ++ +
Sbjct: 835  KEAMLDVERARNEKPFEDLFDFAERVDPRQINKRVYQALSKCGGFDQLEKNRAKAFEASE 894

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             +   +    ++R +   ++F  E      +  L K +  +S    + E   +GFY SGH
Sbjct: 895  MLAAMSNAANRDRNSNQNSLFGDEPPM---RPKLPKAAPWSSEKILDYELSSVGFYLSGH 951

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKT-RKGSRIGWVTFSEPA 1024
            PLD       +  I    + +   R      +  +V  + +K +   G +  ++T S+P+
Sbjct: 952  PLDDILEGPARERIVLSSQMMELGRERAALEMIGVVKVRVEKPSMSGGGKFAYITLSDPS 1011

Query: 1025 KEYEANFFP 1033
             EYE    P
Sbjct: 1012 GEYELFVAP 1020


>gi|15606309|ref|NP_213688.1| DNA polymerase III alpha subunit [Aquifex aeolicus VF5]
 gi|6014991|sp|O67125|DPO3A_AQUAE RecName: Full=DNA polymerase III subunit alpha
 gi|2983510|gb|AAC07087.1| DNA polymerase III alpha subunit [Aquifex aeolicus VF5]
          Length = 1161

 Score = 1012 bits (2616), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1067 (37%), Positives = 599/1067 (56%), Gaps = 72/1067 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL +H+ +SLL+GA+ ++ ++ K       A+ ++D  NLF + +F +   A GI
Sbjct: 2    SKDFVHLHLHTQFSLLDGAIKIDELVKKAKEYGYKAVGMSDHGNLFGSYKFYKALKAEGI 61

Query: 68   QPIIGCQLDIDMQDNLKM---TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +PIIG +              T++          ++L+    +G + L++L +  Y  + 
Sbjct: 62   KPIIGMEAYFTTGSRFDRKTKTSEDNITDKYNHHLILIAKDDKGLKNLMKLSTLAY-KEG 120

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++ G EGLI LT    G        N  + AE+ +  FK +FGD LY+
Sbjct: 121  FYYKPRIDYELLEKYG-EGLIALTACLKGVPTYYASINEVKKAEEWVKKFKDIFGDDLYL 179

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ- 242
             LQ +   ++      ++++A  +++ L+AT ++ +L+ ED  AH VLMA+     + + 
Sbjct: 180  ELQANNIPEQEVANRNLIEIAKKYDVKLIATQDAHYLNPEDRYAHTVLMALQMKKTIHEL 239

Query: 243  --KDRPRVTPDHYLKNRSEMVSIFSD----LPEALENTVEIARRCSFILQVHA---PILP 293
               +      D +      M   F        +AL NT+E+  + +   ++      +LP
Sbjct: 240  SSGNFKCSNEDLHFAPPEYMWKKFEGKFEGWEKALLNTLEVMEKTADSFEIFENSTYLLP 299

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            ++         K  E  LR  A  GL  R+ +G   +    ++Y +RL++EL VI +M F
Sbjct: 300  KYDVPP----DKTLEEYLRELAYKGLRQRIERG---QAKDTKEYWERLEYELEVINKMGF 352

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
            +GYFLIV DFI WAKKN+IPVGPGRGS  GS+ AYA+ ITD+DP++   LFERFLNP+R+
Sbjct: 353  AGYFLIVQDFINWAKKNDIPVGPGRGSAGGSLVAYAIGITDVDPIKHGFLFERFLNPERV 412

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD D+DFCQD R++VI YV+NKYGH+ VAQIIT+  ++AK  LRDV RA+ +PYS  D
Sbjct: 413  SMPDIDVDFCQDNREKVIEYVRNKYGHDNVAQIITYNVMKAKQTLRDVARAMGLPYSTAD 472

Query: 474  RLCKLIPNDP--AHPVSLQAIADDS--------------------RFREARLADPSVDRL 511
            +L KLIP        +SL+ +                        +FR+     P + +L
Sbjct: 473  KLAKLIPQGDVQGTWLSLEEMYKTPVEELLQKYGEHRTDIEDNVKKFRQICEESPEIKQL 532

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            +E + KLEGL RH S HAAG+VI  +PLS+LVP+Y D   ++  TQ++M  +E+ GL+K 
Sbjct: 533  VETALKLEGLTRHTSLHAAGVVIAPKPLSELVPLYYDKEGEV-ATQYDMVQLEELGLLKM 591

Query: 572  DFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            DFLGLKTLT L+   + + +R  V ++   +P DD + Y LL    T G+FQLES GM++
Sbjct: 592  DFLGLKTLTELKLMKELIKERHGVDINFLELPLDDPKVYKLLQEGKTTGVFQLESRGMKE 651

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
             L+ ++PD  +DI+A+++LYRPGP+ +     Y  RK+GKE +    P ++P+LKET GV
Sbjct: 652  LLKKLKPDSFDDIVAVLALYRPGPLKSGLVDTYIKRKHGKEPVEYPFPELEPVLKETYGV 711

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQVM+++Q+LSG++  EAD LR+A+GKK  + M + K++FI GA + G  +     
Sbjct: 712  IVYQEQVMKMSQILSGFTPGEADTLRKAIGKKKADLMAQMKDKFIQGAVERGYPEEKIRK 771

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++E + KFA Y FNKSH+ AY  ISY TA++K HYP EF A  +T E ++  K     +D
Sbjct: 772  LWEDIEKFASYSFNKSHSVAYGYISYWTAYVKAHYPAEFFAVKLTTEKND-NKFLNLIKD 830

Query: 809  ARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLE 866
            A+ F  +I+PP +N   V F + G+NRI + LA IKGVG  TA+ I+EA    K F  L 
Sbjct: 831  AKLFGFEILPPDINKSDVGFTIEGENRIRFGLARIKGVGEETAKIIVEARKKYKQFKGLA 890

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF ++  ++K+N++V+E+LV AGA D     R +LL  + N        EK       ++
Sbjct: 891  DFINKTKNRKINKKVVEALVKAGAFDFTKKKRKELLAKVAN-------SEKALMATQNSL 943

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            F       + K  +E+          + E+ VLGFY SGHPLD Y+ +L+       E+ 
Sbjct: 944  FG------APKEEVEELDP------LKLEKEVLGFYISGHPLDNYEKLLKN-RYTPIEDL 990

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                + +   L  ++   + KKT+ G  +      +     E   FP
Sbjct: 991  EEWDKESEAVLTGVITELKVKKTKNGDYMAVFNLVDKTGLIECVVFP 1037


>gi|254468287|ref|ZP_05081693.1| DNA polymerase III, alpha subunit [beta proteobacterium KB13]
 gi|207087097|gb|EDZ64380.1| DNA polymerase III, alpha subunit [beta proteobacterium KB13]
          Length = 1156

 Score = 1012 bits (2616), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1042 (39%), Positives = 611/1042 (58%), Gaps = 38/1042 (3%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
                 F+HL+ HS YS+ +G + L + +      +  ++AI+D +N+F+A++F + A + 
Sbjct: 4    NSESKFIHLRCHSEYSITDGIVRLGDYVSLAKELELESLAISDLSNIFAAVKFFKLATSN 63

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIG  + I   DN                ++L+    +GY  L +L+SR Y  +Q 
Sbjct: 64   GIKPIIGADVYIQNDDN----------RDQPSRLLLICQNKQGYLNLSKLLSRAYTENQY 113

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            +    I   WL      GLI L+G + G I +         A       K+ F DR Y+ 
Sbjct: 114  RDRPEIKFEWLFSDFNHGLICLSGFNFGAIGQNLLSQKKDKAIHIAKQLKEAFDDRFYLE 173

Query: 186  LQRHRGYDRYRES-----QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            +QR+    +  E       + QL Y  ++PLVAT    F+ +ED++AH+    +A   V+
Sbjct: 174  VQRYEVEKKVEEQENLVLAIAQLGYDLDIPLVATQPIQFIKKEDFQAHEAKTCIADGYVL 233

Query: 241  SQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
              + RP   T + Y K  +EM  +F D+P A+ NT+EI++RC+F  ++    LP F   E
Sbjct: 234  GDQRRPKNFTAEQYFKTPAEMAVLFEDIPSAISNTLEISKRCNFEFELGNVFLPDFPIPE 293

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIA-KGYHAQD--YRQRLDFELNVIARMKFSGY 356
               +       L N A+ GLE +L       K +  Q+  Y  RL FE+NVI +M ++GY
Sbjct: 294  GLTVN----EYLENTAIEGLEKKLKNLYPEVKDFKTQEKKYLDRLHFEINVINQMGYAGY 349

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI WAK+NN+PVGPGRGSGAGSV A+AL ITD+DPL ++LLFERFLNP+R+SMP
Sbjct: 350  FLIVADFINWAKENNVPVGPGRGSGAGSVVAFALGITDLDPLSYNLLFERFLNPERVSMP 409

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFCQ+ RD VI YV+ +YG++ V+QI+TFG++ A+A +RDVGR L +P+  VD + 
Sbjct: 410  DFDIDFCQEGRDRVIEYVKERYGYDAVSQIVTFGTMAARAVIRDVGRVLDLPFPFVDGIA 469

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP +    +   AI  + + ++    +  V  L +++ KLEGL R+   HA G++I  
Sbjct: 470  KLIPMELGISLK-DAIEKEEQIQQRIKNEEEVKELFDLALKLEGLVRNVGMHAGGVLIAP 528

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--- 593
              +S   P+Y     +  V+QF+   +E  GLIKFDFLGL+TLT+L  +L+   +     
Sbjct: 529  GKISDYSPLYCQEGGEGMVSQFDKDDVESIGLIKFDFLGLRTLTILSMALNNANKMRATE 588

Query: 594  --VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                + L  IP DD ET+  L+   T  +FQLES GM+  L+  +PDC EDIIALV+LYR
Sbjct: 589  GKPPIYLDDIPLDDEETFEWLSNANTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYR 648

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+D I  +  RK+G++ +   HP  + +LKET G+ +YQEQVMQIAQ ++GY+L  AD
Sbjct: 649  PGPMDLIPDFCKRKHGQQLVSYPHPSTEGILKETYGIAVYQEQVMQIAQTVAGYTLGGAD 708

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEMD Q+E FI GA++NG+ K  A N+F+LL KFA YGFNKSHAAAYA 
Sbjct: 709  LLRRAMGKKKVEEMDAQREVFIQGATQNGLEKQQASNLFDLLEKFAGYGFNKSHAAAYAK 768

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-V 830
            I+YQTA++K HY   F+AASM+ +M+N + I     D     I+++PPS+N     F+ +
Sbjct: 769  IAYQTAYLKRHYTSSFIAASMSADMNNTDNIALLFDDCVLNKIKLLPPSINNSVFRFQPL 828

Query: 831  GDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  I Y L AIKG G      I+E  +++ P+ SL +FC+R+D +K+NR+V+ESL+ AG
Sbjct: 829  NDKEILYGLGAIKGTGLAAIEVILEDRNSNGPYQSLFEFCARLDLRKVNRKVIESLIRAG 888

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A D    +R  LL S++     A+  +       +++F  E     +          +S 
Sbjct: 889  AFDELEKNRASLLASINQAISLAEQSK--SHMGQDSLFGEEANK--EVTNYVATDEWDSK 944

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             +   E+  LGFY+SGHP   YK ++R M  +   +  A    NN  L+ +V++ + + T
Sbjct: 945  RQIYEEKVALGFYYSGHPFSHYKEMVRAMYPQSLRD--ARPSNNNQWLSGVVMAARNRMT 1002

Query: 1010 RKGSRIGWVTFSEPAKEYEANF 1031
            ++G  I  VT  +     +   
Sbjct: 1003 QRGK-IAIVTLDDGEGRLDMIV 1023


>gi|227545586|ref|ZP_03975635.1| DNA-directed DNA polymerase [Bifidobacterium longum subsp. infantis
            ATCC 55813]
 gi|227213989|gb|EEI81826.1| DNA-directed DNA polymerase [Bifidobacterium longum subsp. infantis
            ATCC 55813]
 gi|291516113|emb|CBK69729.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
            longum F8]
          Length = 1189

 Score = 1012 bits (2616), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1077 (32%), Positives = 556/1077 (51%), Gaps = 57/1077 (5%)

Query: 1    LTQYLEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
            + + +     +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E  
Sbjct: 1    MVERMADYGNNFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMY 60

Query: 60   QKACAAGIQPIIGCQLDIDMQ------DNLKMTNQGKTPFPT-----VPSIVLLVSTAEG 108
                A G++PIIG +  +  +        +    + +          +  + +     EG
Sbjct: 61   TNCVANGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEG 120

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
               LI+  S   L  +  +  R+    L    ++G+I  +G  SG I         + A 
Sbjct: 121  LVNLIKASSVANLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFEEAL 179

Query: 169  KRLLTFKKLF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +    F+ +F  D  ++ L  H    +    + ++ +A   + PL+ATN+S ++  ED +
Sbjct: 180  RAAGEFQDIFGKDNFFIELMDHGLTIETQVTNDLLTIAKKLDAPLLATNDSHYVHAEDAQ 239

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            A D ++ +   + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ + 
Sbjct: 240  AQDAMLCINSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMF 299

Query: 286  QVHAP--ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
              H     +P+F   E  D    E +    K   GLE R        G    D  ++ D+
Sbjct: 300  DDHEDGAFMPKFPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADY 349

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            E  VI +M+F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+
Sbjct: 350  ECGVICQMQFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLI 409

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R+S+PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R
Sbjct: 410  FERFLNPERVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSAR 469

Query: 464  ALQMPYSQVDRLCKLIPN--DPAHPVSL--------QAIADDSRFREARLADPSVDRLLE 513
             +   +S  +++ K +P        +SL        +  A+   FRE   +DP   R+ E
Sbjct: 470  IMGYEFSVGEKITKALPPAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITE 529

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             ++ +EGL R    HA   ++G  P++   P+  +       T F     E  GL+K DF
Sbjct: 530  EAKGIEGLIRQTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDF 588

Query: 574  LGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL  LT++  +L  + A     +D + IP DD ETY L++   TLG+FQL+S GMR  L
Sbjct: 589  LGLSNLTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLL 648

Query: 633  EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQ 686
            + ++PD   DI AL++LYRPGP+  D+   Y  RKNG +KI  IHP ++     +L ET 
Sbjct: 649  KTLKPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETY 708

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+IIYQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +
Sbjct: 709  GLIIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEAS 768

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   + 
Sbjct: 769  QAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYL 828

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDS 864
             +AR+  IQ++ P VN    ++    + + + L AI+ VG      I+         F +
Sbjct: 829  GEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVN 888

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              DF  RV    LNRR++ESL+ AGA D    +R  LL   +        +++ +     
Sbjct: 889  FMDFIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQF 948

Query: 925  NIFAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            ++F+  +   ++      +T+      +   +   E+ +LG Y S HPL   + IL  + 
Sbjct: 949  DLFSDAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLR 1008

Query: 980  IKGYEESVATIR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   V   +    G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1009 EMSIAHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065


>gi|94309699|ref|YP_582909.1| DNA polymerase III subunit alpha [Cupriavidus metallidurans CH34]
 gi|93353551|gb|ABF07640.1| DNA polymerase III alpha subunit [Cupriavidus metallidurans CH34]
          Length = 1176

 Score = 1012 bits (2616), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1054 (38%), Positives = 613/1054 (58%), Gaps = 45/1054 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P FVHL++HS YS+++G + L++ +   A D   A+A+TD  N F  + F ++A   G
Sbjct: 11   SAPRFVHLRLHSEYSIVDGIVRLDDAVKAAARDGMGALALTDLANAFGLIRFYKEARGGG 70

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P++G  + +   ++     +          ++LLV    GY  L  L+SR +L +Q +
Sbjct: 71   VKPVVGADVWLTNAEDRDKPAR----------MLLLVQDRIGYLNLCTLLSRAWLGNQHR 120

Query: 127  QSVRICLSWLQEIG------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                    WL E G        GLI L+G   G + +A    + + A +    + ++F  
Sbjct: 121  GRAEFEPGWLGEPGEEGLPLATGLIALSGAMGGDVGQALANGNVEAARRAAEHWARVFPQ 180

Query: 181  RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R Y+ LQR           Q VQLA + +LP+VAT+   F++ +D+ AH+  + +A   +
Sbjct: 181  RYYIELQRAGQPGTDAYVPQAVQLAASMQLPVVATHPVQFMTPDDFTAHEARVCIAEGEL 240

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  + T D Y K + EM ++F+D+P AL+N+VEIA+RC+  L++  P LP F   
Sbjct: 241  LANPRRTRKFTTDQYFKTQDEMTALFADIPSALQNSVEIAKRCNLTLELGKPRLPLFPTP 300

Query: 299  ECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L   A  GLE R   L      +     +Y  RL+FE   I +M F G
Sbjct: 301  DGMSL----DDYLVFMAKEGLEKRMLVLFPDEAERESKRAEYYARLEFETGTIIKMGFPG 356

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 357  YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVSM 416

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y  VD +
Sbjct: 417  PDFDIDFCQHGRDRVITYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDGV 476

Query: 476  CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP  P   V+L+ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 477  AKLIPFKPGKLVTLEEAKKEEPALAERERTEEEVRQLLELAQRVEGMTRNVGMHAGGVLI 536

Query: 535  GDRPLSQLVPMYRDVRSDL--PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
                L+   P+Y      +   V+Q++   +E AGL+KFDFLGL TLT+L  +  ++ + 
Sbjct: 537  APGRLTDFCPLYTQGTDGMSGVVSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYIRRL 596

Query: 593  GV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                   + S IP DD   + +L +  T+ +FQLES GM+  L+  +PD  EDIIALV+L
Sbjct: 597  DPSKADWNCSQIPLDDSPAFDILKSANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVAL 656

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  
Sbjct: 657  YRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGG 716

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM K ++ F  GA KNG++   A +IF+L+ KFA YGFNKSHAAAY
Sbjct: 717  ADLLRRAMGKKKPEEMAKHRDMFREGADKNGLTAQQADDIFDLMEKFAGYGFNKSHAAAY 776

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF- 828
            A+++Y TAW+K H+P EF+AA+M+L MD+ +K+K   +D R   I+++PP VN     F 
Sbjct: 777  ALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYEDCRLNKIEVLPPDVNASEYRFA 836

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L  IKG G      I+ A  ++PFD L DFC RVD +++NRR +E+L+ A
Sbjct: 837  PTDAKTIRYGLGGIKGSGQGAIEDILRAREERPFDDLFDFCERVDRRQVNRRTIEALIRA 896

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVEN 947
            GA D    +R QLL S+    + A   +K  +    ++F   +    S +  L       
Sbjct: 897  GAFDSLNDNRAQLLASVSIAMEAAD--QKAESANQVSLFDLMDDAGASHRPELVDEPRWT 954

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------GNNIR---LA 998
                 + E++ LG+YFSGH  D  +  +R+            ++      G ++R   +A
Sbjct: 955  PKRTLQEEKQALGYYFSGHLFDASRDEVRRFVKGTLAALEKEVQGNGGGYGRDVRGKVIA 1014

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++   + + T++G  I  V   +   + E   F
Sbjct: 1015 GVITGIRTQMTQRGKLI-IVLLDDGTAQIEMTVF 1047


>gi|307292876|ref|ZP_07572722.1| DNA polymerase III, alpha subunit [Sphingobium chlorophenolicum L-1]
 gi|306880942|gb|EFN12158.1| DNA polymerase III, alpha subunit [Sphingobium chlorophenolicum L-1]
          Length = 1178

 Score = 1011 bits (2615), Expect = 0.0,   Method: Composition-based stats.
 Identities = 474/1041 (45%), Positives = 638/1041 (61%), Gaps = 31/1041 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L+V SS+++LEGA+    I  +  A   PA AITD N L+ ++ FS      G+QP
Sbjct: 5    GFVPLRVFSSFTMLEGAIDPKKIAKQAKALGFPAAAITDRNGLYGSMAFSDACKGEGVQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG  + +   D            P    I L    A GY  L  LVS  +L    ++  
Sbjct: 65   VIGAMVGVARPDRPANAP------PVHDWIALYAQDAAGYDNLCALVSMAHLERPVEEVP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I L+ L E  T+GLI LT G  G + R F  +    A       + LF DRLY+ + R 
Sbjct: 119  HISLAML-EGRTDGLIALTAGGEGALARLFAEDQPAAALAYAKRLEALFPDRLYIEICRR 177

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E +++ LAY   LPLVATN + F     +EAHDV++ +A S  V   DR   
Sbjct: 178  LDPVEGKAEPELLDLAYARNLPLVATNPTCFAEPHFHEAHDVMLCIADSAYVETPDRRTS 237

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +PD ++K  +EM  +F DLPEAL NT+ +A+RC+       PILP           + E 
Sbjct: 238  SPDAWMKPAAEMKRLFEDLPEALANTLVVAQRCAVAAPKRKPILPSLAGD-----IEGEA 292

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR +A  GLE RLA+  I      + Y  RL FE ++I +M F GYFLIVADFI+WAK
Sbjct: 293  KMLREQAAEGLEARLAKAGIIDEEARKPYFDRLKFETDIIIQMGFPGYFLIVADFIKWAK 352

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              +IPVGPGRGSGAGSV A+ALTITD+DPL+  LLFERFLNP+R+SMPDFDIDFC+ RR 
Sbjct: 353  DQDIPVGPGRGSGAGSVVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFCETRRG 412

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVIRYVQ KYG + VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P  P +
Sbjct: 413  EVIRYVQQKYGADHVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWT 472

Query: 489  LQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L+  +   + FR     D  V RL++ + KLEG  RH+STHAAG+VIGDRPLSQLVP+YR
Sbjct: 473  LERSLNGVAEFRAEYDNDNQVRRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLSQLVPLYR 532

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++  LA RGV++DL+ + +DD  
Sbjct: 533  DPRSDMPVTQFDMKYVEGAGLVKFDFLGLKTLSVLQKAVQLLAGRGVEIDLNSLGWDDPA 592

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             Y LL    T+G+FQLES GMR+ L  ++P    DIIALVSLYRPGP+DNI ++  RKNG
Sbjct: 593  VYELLQRGDTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDNIPMFGRRKNG 652

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E+I   H L+ P+L+ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKKIK EMD 
Sbjct: 653  QEEIEYPHILLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKIKAEMDA 712

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+ RF+ G +++ I+   A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K HYP EF
Sbjct: 713  QRARFVEGCARSDIATGKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPAEF 772

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----------NRIY 836
             AASM  ++   +K+  F  D R+  +  + P +N    DF V               + 
Sbjct: 773  YAASMAFDIHLTDKLTVFVDDMRRMGLACLAPDINRSQADFSVEAIEQEGDDPRLGFAVR 832

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y+L  +KGVG      ++ E  A  PF SL+DF  R++ + LNRR LESL  AGA D   
Sbjct: 833  YALGGLKGVGEKAMEQLVAEREAGGPFKSLDDFADRIEPRLLNRRQLESLAAAGAFDGVY 892

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R  +  + + I   A    + R +    +F   +   +D + +      +++ R   E
Sbjct: 893  ADRAGVHAAAETILSVASSAAEARESGQGGLFGDVETPHAD-VRIPPHQTWSTADRMAQE 951

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKG----YEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
            +   GFYFS HP+D Y+ +    G K       E VA     N  +AAMV   + ++T++
Sbjct: 952  KDAFGFYFSAHPVDRYRHLAEARGAKSYGAICAEPVAEGGRANGVMAAMVEDVRWRETKR 1011

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G+R    TFS+ + +++A+ F
Sbjct: 1012 GARYAAATFSDSSGQFQASCF 1032


>gi|23336668|ref|ZP_00121872.1| COG0587: DNA polymerase III, alpha subunit [Bifidobacterium longum
            DJO10A]
          Length = 1189

 Score = 1011 bits (2615), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1077 (32%), Positives = 555/1077 (51%), Gaps = 57/1077 (5%)

Query: 1    LTQYLEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
            + + +     +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E  
Sbjct: 1    MVERMADYGNNFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMY 60

Query: 60   QKACAAGIQPIIGCQLDIDMQ------DNLKMTNQGKTPFPT-----VPSIVLLVSTAEG 108
                A G++PIIG +  +  +        +    + +          +  + +     EG
Sbjct: 61   TNCVANGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEG 120

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
               LI+  S   L  +  +  R+    L    ++G+I  +G  SG I           A 
Sbjct: 121  LVNLIKASSVANLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEAL 179

Query: 169  KRLLTFKKLF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +    F+ +F  D  ++ L  H    +    + ++ +A   + PL+ATN+S ++  ED +
Sbjct: 180  RAAGEFQDIFGKDNFFIELMDHGLTIETQVTNDLLTIAKKLDAPLLATNDSHYVHAEDAQ 239

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            A D ++ +   + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ + 
Sbjct: 240  AQDAMLCINSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMF 299

Query: 286  QVHAP--ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
              H     +P+F   E  D    E +    K   GLE R        G    D  ++ D+
Sbjct: 300  DDHEDGAFMPKFPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADY 349

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            E  VI +M+F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+
Sbjct: 350  ECGVICQMQFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLI 409

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R+S+PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R
Sbjct: 410  FERFLNPERVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSAR 469

Query: 464  ALQMPYSQVDRLCKLIPN--DPAHPVSL--------QAIADDSRFREARLADPSVDRLLE 513
             +   +S  +++ K +P        +SL        +  A+   FRE   +DP   R+ E
Sbjct: 470  IMGYEFSVGEKITKALPPAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITE 529

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             ++ +EGL R    HA   ++G  P++   P+  +       T F     E  GL+K DF
Sbjct: 530  EAKGIEGLIRQTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDF 588

Query: 574  LGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL  LT++  +L  + A     +D + IP DD ETY L++   TLG+FQL+S GMR  L
Sbjct: 589  LGLSNLTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLL 648

Query: 633  EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQ 686
            + ++PD   DI AL++LYRPGP+  D+   Y  RKNG +KI  IHP ++     +L ET 
Sbjct: 649  KTLKPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETY 708

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+IIYQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +
Sbjct: 709  GLIIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEAS 768

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   + 
Sbjct: 769  QAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYL 828

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDS 864
             +AR+  IQ++ P VN    ++    + + + L AI+ VG      I+         F +
Sbjct: 829  GEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVN 888

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              DF  RV    LNRR++ESL+ AGA D    +R  LL   +        +++ +     
Sbjct: 889  FMDFIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQF 948

Query: 925  NIFAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            ++F+  +   ++      +T+      +   +   E+ +LG Y S HPL   + IL  + 
Sbjct: 949  DLFSDAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLR 1008

Query: 980  IKGYEESVATIR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   V   +    G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1009 EMSIAHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065


>gi|148273031|ref|YP_001222592.1| DNA polymerase III subunit alpha [Clavibacter michiganensis subsp.
            michiganensis NCPPB 382]
 gi|147830961|emb|CAN01906.1| dnaE2 [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 1170

 Score = 1011 bits (2615), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1061 (36%), Positives = 569/1061 (53%), Gaps = 46/1061 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++ SFVHL VHS YS+L+GA  +  ++   A  + PA+AITD  N+F A +F ++A A
Sbjct: 1    MPRNDSFVHLHVHSEYSMLDGAARVGPLVQAAAEQKMPAVAITDHGNVFGAFDFWKQAKA 60

Query: 65   AGIQPIIGCQLDIDM------QDNLKMTNQGKTPF---PTVPSIVLLVSTAEGYQRLIEL 115
            AG++PIIG +  I        +  ++  N G+           + +L  T EG   L  L
Sbjct: 61   AGVKPIIGTEAYITPGTHRGDRTRIRWGNGGQDDVSGSGAYTHLTMLAETTEGMHNLFRL 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             SR  L        R+    L     +GLI  TG  SG +           A K    F+
Sbjct: 121  SSRASLEG-YYFKPRMDRELLSTYA-KGLIATTGCPSGEVQTRLRLGQYDEAVKAAADFR 178

Query: 176  KLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +F  +  +  +  H  G +R   + + +LA    LPLVATN+  +  E D  +H  L+ 
Sbjct: 179  DIFGAENYFCEVMDHGLGIERRIMTDLHRLAKDLGLPLVATNDLHYTHEHDATSHAALLC 238

Query: 234  VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            V   T +   +R +   D  YLK   +M  +F D  EA +NT+ IA RC       A  +
Sbjct: 239  VQSGTTLDDPNRFKFDADEFYLKTAQQMRHLFRDHEEACDNTLLIAERCDVQFNESANYM 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            PR+   E +     E+     +   GL  R  +G       + D R+R D+E+ VIA+M 
Sbjct: 299  PRYPVPEGE----SEQTWFVKEVERGLVRRYPRG------FSDDVRKRADYEVGVIAQMG 348

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFL+VADFI W+K+N I VGPGRGSGAGS+ AYA+ ITD+DPL   LLFERFLNPDR
Sbjct: 349  FPGYFLVVADFINWSKENGIRVGPGRGSGAGSMVAYAMGITDLDPLEHGLLFERFLNPDR 408

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFD+DF   RR EVIRYV +KYG ERVAQI+T+G+++AK AL+D  R L  P+S  
Sbjct: 409  VSMPDFDVDFDDRRRGEVIRYVTDKYGDERVAQIVTYGTIKAKQALKDSSRVLGYPFSMG 468

Query: 473  DRLCKLIPN-DPAHPVSLQAI--ADDSRFREARL------ADPSVDRLLEISQKLEGLYR 523
            D+L K +P       + L  I   D  R+REA         DP   ++ E +Q +E L R
Sbjct: 469  DKLTKAMPPAIMGKDIPLSGILDTDHPRYREAGDFREVLAMDPEAQKVFETAQGIENLKR 528

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
                HAAG+++   PL  ++P+ +  +    VTQF+    E  GLIK DFLGL+ LT++ 
Sbjct: 529  QWGVHAAGVIMSSEPLIDIIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIID 588

Query: 584  KSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             +L+ +   RG K+ L  +  DD   Y LL    TLG+FQL+   MR  L  M+PD  ED
Sbjct: 589  DALNNIESNRGEKLVLEDLGLDDQGAYDLLARGDTLGVFQLDGGPMRSLLRMMKPDNFED 648

Query: 643  IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVM 696
            I A+++LYRPGP+  ++   Y  RKNG ++I  IHP ++     +L  T G+I+YQEQVM
Sbjct: 649  ISAVIALYRPGPMGANSHTNYALRKNGLQEITPIHPELEEPLREVLGTTHGLIVYQEQVM 708

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
             +AQ L+G++L++AD+LRRAMGKK K E+DKQ E F  G   NG S      ++++L  F
Sbjct: 709  SVAQKLAGFTLAQADLLRRAMGKKKKSELDKQFEGFSQGMKDNGYSMAAVKALWDILLPF 768

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            +DY FNK+H+AAY V+SY TA++K HYP E++AA +T   D+ +K+  +  + R+  I++
Sbjct: 769  SDYAFNKAHSAAYGVVSYWTAYLKAHYPAEYMAALLTSVGDSKDKMALYLNECRRMGIKV 828

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSK 875
            +PP VN     F      I + L A++ VG      +  A      F+S +DF  +V   
Sbjct: 829  LPPDVNESIGFFAAAGADIRFGLGAVRNVGANVVEALRGARTEQGAFESFDDFLKKVPLP 888

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI-FAHEKGTF 934
              N+R +ESL+ AGA D  G +R  LL+  + +   +   ++   N      F       
Sbjct: 889  VANKRTVESLIKAGAFDSLGDTRRALLEVHEGMIDASVSDKRAAMNGQVGFDFDSLWDEP 948

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT---IR 991
                 + +        +   E+ +LG Y S HPL   +  L K+   G  E +AT   + 
Sbjct: 949  QHARKVPERPEWAKRDKLAFEREMLGLYVSDHPLAGLEIPLAKLASTGIAELLATDASMD 1008

Query: 992  GNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANF 1031
            G  + LA ++ S Q +  R  G++ G V   +   E    F
Sbjct: 1009 GETVTLAGLLTSVQHRTARNSGNQYGMVQLEDFGGEITCMF 1049


>gi|317481576|ref|ZP_07940612.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916936|gb|EFV38322.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA]
          Length = 1185

 Score = 1011 bits (2615), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/1067 (32%), Positives = 552/1067 (51%), Gaps = 56/1067 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++P
Sbjct: 7    NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 66

Query: 70   IIGCQLDIDMQ------DNLKMTNQGKTPFPT-----VPSIVLLVSTAEGYQRLIELVSR 118
            IIG +  +  +        +    + +          +  + +     EG   LI+  S 
Sbjct: 67   IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 126

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L  +  +  R+    L    ++G+I  +G  SG I         + A +    F+ +F
Sbjct: 127  ANLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFEEALRAAGEFQDIF 185

Query: 179  -GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
              D  ++ L  H    +    + ++ +A   + PL+ATN+S ++  ED +A D ++ +  
Sbjct: 186  GKDNFFIELMDHGLTIETQVTNDLLTIAKKLDAPLLATNDSHYVHAEDAQAQDAMLCINS 245

Query: 237  STVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP--ILP 293
             + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H     +P
Sbjct: 246  GSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMP 305

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            +F   E  D    E +    K   GLE R        G    D  ++ D+E  VI +M+F
Sbjct: 306  KFPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQF 355

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+
Sbjct: 356  CGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERV 415

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            S+PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  +
Sbjct: 416  SLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGE 475

Query: 474  RLCKLIPN--DPAHPVSL--------QAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            ++ K +P        +SL        +  A+   FRE   +DP   R+ E ++ +EGL R
Sbjct: 476  KITKALPPAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIEGLIR 535

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
                HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  LT++ 
Sbjct: 536  QTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIH 594

Query: 584  KSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             +L  + A     +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++PD   D
Sbjct: 595  DTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFND 654

Query: 643  IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVM 696
            I AL++LYRPGP+  D+   Y  RKNG +KI  IHP ++     +L ET G+IIYQEQV 
Sbjct: 655  ISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQ 714

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
              A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  ++++L  F
Sbjct: 715  SAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPF 774

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            + Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  IQ+
Sbjct: 775  SGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQV 834

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDS 874
            + P VN    ++    + + + L AI+ VG      I+         F +  DF  RV  
Sbjct: 835  LSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPL 894

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
              LNRR++ESL+ AGA D    +R  L    +        +++ +     ++F+  +   
Sbjct: 895  TALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGG 954

Query: 935  SDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
            ++      +T+      +   +   E+ +LG Y S HPL   + IL  +        V  
Sbjct: 955  AEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDR 1014

Query: 990  IR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +    G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1015 AKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061


>gi|189439008|ref|YP_001954089.1| DNA polymerase III subunit alpha [Bifidobacterium longum DJO10A]
 gi|189427443|gb|ACD97591.1| DNA polymerase III alpha subunit [Bifidobacterium longum DJO10A]
          Length = 1185

 Score = 1011 bits (2615), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1067 (32%), Positives = 552/1067 (51%), Gaps = 56/1067 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++P
Sbjct: 7    NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 66

Query: 70   IIGCQLDIDMQ------DNLKMTNQGKTPFPT-----VPSIVLLVSTAEGYQRLIELVSR 118
            IIG +  +  +        +    + +          +  + +     EG   LI+  S 
Sbjct: 67   IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 126

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L  +  +  R+    L    ++G+I  +G  SG I           A +    F+ +F
Sbjct: 127  ANLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIF 185

Query: 179  -GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
              D  ++ L  H    +    + ++ +A   + PL+ATN+S ++  ED +A D ++ +  
Sbjct: 186  GKDNFFIELMDHGLTIETQVTNDLLTIAKKLDAPLLATNDSHYVHAEDAQAQDAMLCINS 245

Query: 237  STVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP--ILP 293
             + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H     +P
Sbjct: 246  GSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMP 305

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            +F   E  D    E +    K   GLE R        G    D  ++ D+E  VI +M+F
Sbjct: 306  KFPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQF 355

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+
Sbjct: 356  CGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERV 415

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            S+PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  +
Sbjct: 416  SLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGE 475

Query: 474  RLCKLIPN--DPAHPVSL--------QAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            ++ K +P        +SL        +  A+   FRE   +DP   R+ E ++ +EGL R
Sbjct: 476  KITKALPPAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIEGLIR 535

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
                HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  LT++ 
Sbjct: 536  QTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIH 594

Query: 584  KSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             +L  + A     +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++PD   D
Sbjct: 595  DTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFND 654

Query: 643  IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVM 696
            I AL++LYRPGP+  D+   Y  RKNG +KI  IHP ++     +L ET G+IIYQEQV 
Sbjct: 655  ISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQ 714

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
              A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  ++++L  F
Sbjct: 715  SAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPF 774

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            + Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  IQ+
Sbjct: 775  SGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQV 834

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDS 874
            + P VN    ++    + + + L AI+ VG      I+         F +  DF  RV  
Sbjct: 835  LSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPL 894

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
              LNRR++ESL+ AGA D    +R  LL   +        +++ +     ++F+  +   
Sbjct: 895  TALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGG 954

Query: 935  SDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
            ++      +T+      +   +   E+ +LG Y S HPL   + IL  +        V  
Sbjct: 955  AEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDR 1014

Query: 990  IR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +    G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1015 AKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061


>gi|295394749|ref|ZP_06804964.1| DNA-directed DNA polymerase III alpha subunit [Brevibacterium
            mcbrellneri ATCC 49030]
 gi|294972345|gb|EFG48205.1| DNA-directed DNA polymerase III alpha subunit [Brevibacterium
            mcbrellneri ATCC 49030]
          Length = 1178

 Score = 1011 bits (2614), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1068 (34%), Positives = 564/1068 (52%), Gaps = 54/1068 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  FVHL VH+ YS+L+GA  L +++         A+A TD   LF A +F  +A  AGI
Sbjct: 2    ADDFVHLHVHTEYSMLDGAARLGDLMAATNELGMRALATTDHGYLFGAFDFWNQATKAGI 61

Query: 68   QPIIGCQLDIDM------------QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +PIIG +  +              + +    +   +       + LL     G Q L + 
Sbjct: 62   KPIIGVEAYVTPGTARNDKTVVKWRTDESQRSDDVSGGGRYTHMTLLSRNNRGMQNLFKA 121

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S   L        R+    LQ   + GLI  TG  SG +         + A K    ++
Sbjct: 122  SSLASLDSALGNRPRLDRELLQNY-SNGLIATTGCPSGEVQTRLRLGQYEEARKAAGEYR 180

Query: 176  KLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++F  D  +  L  H    +R     +++LA    LPLVATN+  +  E D  AH+ L+A
Sbjct: 181  EIFGADYYFCELMDHGLEIERRVTKDLLRLAKELNLPLVATNDLHYTHESDATAHEALLA 240

Query: 234  VAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            +   + + +                +YLK+ +EM  +F +LPEA +NT++IA  C     
Sbjct: 241  LQSGSKLLEPTYEQGGSRFAFSGTGYYLKSPAEMRHLFKELPEACDNTLKIADMCEVSFD 300

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
              A  +P+F   E +D    E + L  +   GL  R  QG         + R++ D+EL+
Sbjct: 301  TSANYMPKFPTPEGED----ETSWLIKEVDKGLHYRYPQGI------PDEVRKQADYELD 350

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            +I +M F GYFL+VADFI W+K N I VGPGRGSGAGS+ AYA+ ITD+DPL+  L+FER
Sbjct: 351  IIIKMGFPGYFLVVADFINWSKDNGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLIFER 410

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPDFD+DF   RR EVI YV  KYG E VA I+T+G+++ K AL+D  R L 
Sbjct: 411  FLNPERVSMPDFDVDFDDRRRSEVIDYVTQKYGSEYVAMIVTYGTIKTKQALKDAARVLG 470

Query: 467  MPYSQVDRLCKLIPND-PAHPVSLQAIA--------DDSRFREARLADPSVDRLLEISQK 517
             P+S  + L K +P    A  + L  I         +   FR     +     + E ++ 
Sbjct: 471  HPFSMGEELTKALPPAAMAKDIPLTDIENPEAPRYNEAGDFRNLLATNEQAREVFETARG 530

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R    HAAG+++   P+  ++P+ R  +    +TQF+    E  GLIK DFLGL+
Sbjct: 531  LEGLKRQWGVHAAGVIMSSEPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFLGLR 590

Query: 578  TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT++  +L+ +   R V++DL  +  DD +TY LL    TLG+FQL+  G++  L  MQ
Sbjct: 591  NLTIISDALENIQRNRDVEIDLERLELDDEDTYKLLARGDTLGVFQLDGGGLQGLLRLMQ 650

Query: 637  PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVII 690
            PD  EDI A ++LYRPGP+  D+   Y  RKNG ++I  IHP +      +L  T G+II
Sbjct: 651  PDNFEDISATLALYRPGPMGADSHTNYAKRKNGLQEITPIHPELAEPLKEILDTTYGLII 710

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVM IAQ ++GYSL +AD+LRRAMGKK K E+DKQ+  F  G  + G S+  A  ++
Sbjct: 711  YQEQVMAIAQKVAGYSLGQADILRRAMGKKKKAELDKQQVGFFGGMKERGYSEEAAQALW 770

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            ++L  F+DY FNK+H+AAY V+SY TA++K HYP E++AA +T   DN +K+  +  + R
Sbjct: 771  DILLPFSDYAFNKAHSAAYGVVSYWTAYLKAHYPAEYMAALLTSVGDNKDKLAVYLGECR 830

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFC 869
            + +I ++PP VN   ++F    N I + + A++ VG      I+E+      F S  DF 
Sbjct: 831  KMHITVLPPDVNESELNFTPVGNDIRFGMGAVRNVGHNVVDGIVESRTEKGAFTSFSDFL 890

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             +V S   N+R +ESL+ +GA D  G++R  L++  +        V++       ++FA 
Sbjct: 891  DKVPSHVCNKRTVESLIKSGAFDSLGHTRRALVEIHEEAVDSVVGVKRQEAAGQFDLFAG 950

Query: 930  EKGTFSD--KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              G  +    + +      +   +   E+ ++G Y S HPL+  + ++         + +
Sbjct: 951  LGGDDAASFSVPIPDRVEWDKKEKLAFEREMIGLYVSDHPLNGLEGVIASESDLPLVDLI 1010

Query: 988  ATIR--GNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
            +  R  G+ I +  M+ S  ++ ++  G     VT  +     E  FF
Sbjct: 1011 SQGRSEGSTITVCGMITSLVRRVSKNSGRPYAIVTIEDLEASIEVLFF 1058


>gi|23464753|ref|NP_695356.1| DNA polymerase III subunit alpha [Bifidobacterium longum NCC2705]
 gi|23325323|gb|AAN23992.1| DNA polymerase III alpha subunit [Bifidobacterium longum NCC2705]
          Length = 1189

 Score = 1011 bits (2614), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1077 (32%), Positives = 552/1077 (51%), Gaps = 57/1077 (5%)

Query: 1    LTQYLEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
            + + +     +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E  
Sbjct: 1    MVERMADYGNNFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMY 60

Query: 60   QKACAAGIQPIIGCQLDIDMQ------DNLKMTNQGKTPFPT-----VPSIVLLVSTAEG 108
                A G++PIIG +  +  +        +    + +          +  + +     EG
Sbjct: 61   TNCVANGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEG 120

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
               LI+  S   L  +  +  R+    L    ++G+I  +G  SG I           A 
Sbjct: 121  LVNLIKASSVANLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEAL 179

Query: 169  KRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +    F+ +F  D  ++ L  H    +      ++ +A     PL+ATN+S ++  ED  
Sbjct: 180  RAAGEFQDIFGKDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAG 239

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            A D ++ +   + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ + 
Sbjct: 240  AQDAMLCINSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMF 299

Query: 286  QVHAP--ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
              H     +P+F   E  D    E +    K   GLE R        G    D  ++ D+
Sbjct: 300  DDHEDGAFMPKFPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADY 349

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            E  VI +M+F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+
Sbjct: 350  ECGVICQMQFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLI 409

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R+S+PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R
Sbjct: 410  FERFLNPERVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSAR 469

Query: 464  ALQMPYSQVDRLCKLIPN--DPAHPVSL--------QAIADDSRFREARLADPSVDRLLE 513
             +   +S  +++ K +P        +SL        +  A+   FRE   +DP   R+ E
Sbjct: 470  IMGYEFSVGEKITKALPPAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITE 529

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             ++ +EGL R    HA   ++G  P++   P+  +       T F     E  GL+K DF
Sbjct: 530  EAKGIEGLIRQTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDF 588

Query: 574  LGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL  LT++  +L  + A     +D + IP DD ETY L++   TLG+FQL+S GMR  L
Sbjct: 589  LGLSNLTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLL 648

Query: 633  EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQ 686
            + ++PD   DI AL++LYRPGP+  D+   Y  RKNG +KI  IHP ++     +L ET 
Sbjct: 649  KTLKPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETY 708

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+IIYQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +
Sbjct: 709  GLIIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEAS 768

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   + 
Sbjct: 769  QAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYL 828

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDS 864
             +AR+  IQ++ P VN    ++    + + + L AI+ VG      I+         F +
Sbjct: 829  GEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVN 888

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              DF  RV    LNRR++ESL+ AGA D    +R  LL   +        +++ +     
Sbjct: 889  FMDFIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQF 948

Query: 925  NIFAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            ++F+  +   ++      +T+      +   +   E+ +LG Y S HPL   + IL  + 
Sbjct: 949  DLFSDAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLR 1008

Query: 980  IKGYEESVATIR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   V   +    G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1009 EMSIAHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065


>gi|302866756|ref|YP_003835393.1| DNA polymerase III subunit alpha [Micromonospora aurantiaca ATCC
            27029]
 gi|315503171|ref|YP_004082058.1| DNA polymerase iii, alpha subunit [Micromonospora sp. L5]
 gi|302569615|gb|ADL45817.1| DNA polymerase III, alpha subunit [Micromonospora aurantiaca ATCC
            27029]
 gi|315409790|gb|ADU07907.1| DNA polymerase III, alpha subunit [Micromonospora sp. L5]
          Length = 1177

 Score = 1011 bits (2614), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1065 (33%), Positives = 554/1065 (52%), Gaps = 52/1065 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YS+L+GA  L ++  + A    PA+AITD  N+  A +F ++A  AG++P
Sbjct: 4    SFAHLHVHTEYSMLDGAARLKDLFAEAARLGMPAVAITDHGNMHGANDFYKQAMDAGVKP 63

Query: 70   IIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            I+G +  +  +                    +    +  + +  +  +G   L +L SR 
Sbjct: 64   ILGVEAYVAPESRFHKARVKWGRPEQKSDDVSGNGAITHMTMWAANRDGLHNLFKLNSRA 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF- 178
             +     +  R+ +  + E   EG++  TG  SG +           A K    ++ +F 
Sbjct: 124  SMEGHYVKWPRMDMELIAE-HAEGIMATTGCPSGAVQTRLRLGQFDEALKVAAAYQDIFG 182

Query: 179  GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ +  H    +R     + ++A   ++P V TN+S +  E   EAHDVL+ V   
Sbjct: 183  KDNYFLEIMDHGLDIERRVRDGLTEIARKLDIPPVVTNDSHYTHEAQAEAHDVLLCVQTG 242

Query: 238  TVVSQKDRPRVTPDHYL-KNRSEMVSIFSD--LPEALENTVEIARRCSFILQV-HAPILP 293
            + V+  +R R     Y  K+  +M ++ S     +   NT+ +A +           ++P
Sbjct: 243  SNVADPNRFRFEGGGYFVKSADQMRAVDSSELWQQGCRNTLLVAEKVDPAGMFTFHNLMP 302

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            RF   E +     EE+  R +  AGL  R   G        + +  + ++EL VI +M F
Sbjct: 303  RFPIPEGE----TEESWFRKETFAGLARRFPGGI------PEGHVVQAEYELGVIIQMGF 352

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL+VADFIQWAK   I VGPGRGS AGS+ AYAL ITD+DP+   L+FERFLNP+R+
Sbjct: 353  PSYFLVVADFIQWAKSQGIAVGPGRGSAAGSLVAYALGITDLDPIPHGLIFERFLNPERV 412

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD DIDF + RR EVI+YV +K+G ++VAQI TFG+++AKAA++D  R L  PY+  D
Sbjct: 413  SMPDVDIDFDERRRGEVIKYVTDKWGEDKVAQIATFGTIKAKAAIKDSARVLGFPYAVGD 472

Query: 474  RLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRH 524
            R+ K +P       + L  I D            R    +DP V +++E ++ +EGL R 
Sbjct: 473  RITKAMPPAVMGKDIPLSGIFDPKHPRYAEAGEIRGLYESDPDVKKVIETAKGIEGLIRQ 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HAAG+++   P+ + +P+ R     + +TQF+    E  GL+K DFLGL+ LT++  
Sbjct: 533  TGVHAAGVIMSAEPIIEHIPLMRRDSDGVIITQFDYPTCESLGLLKMDFLGLRNLTIIDD 592

Query: 585  SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++  +    G ++DL  +P DD + Y LL    TLG+FQL+   MR  L  M+PD  EDI
Sbjct: 593  AVKNIQLNHGRELDLLGLPLDDRQAYELLARGDTLGVFQLDGGPMRSLLRLMKPDNFEDI 652

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVMQ 697
             A+++LYRPGP+  D+   Y  RKNG ++I  IHP ++     +L  T G+I+YQEQV +
Sbjct: 653  SAVLALYRPGPMGVDSHTNYALRKNGLQEITPIHPELEEPLREILAPTYGLIVYQEQVQR 712

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
             AQ+L+GY+L +AD+LRRAMGKK KE +DK+   F  G  + G S      ++++L  FA
Sbjct: 713  AAQILAGYTLGQADLLRRAMGKKKKEILDKEFIPFRDGCRERGYSDEAIQAVWDVLVPFA 772

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y FNK+H+AAY ++SY TA++K HYP E++AA +T   D+ +K+  +  + R+  IQ++
Sbjct: 773  GYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKMALYLSECRRMRIQVL 832

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876
            PP VNT    F      I + L A++ VG      IM    +   +    DF S+VD+  
Sbjct: 833  PPDVNTSAGPFTPVGKEIRFGLGAVRNVGANVVASIMRCREEKGDYTDFYDFLSKVDAVV 892

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEK 931
             N++ +ESL+ AGA D   + R  LL    +       V++       ++F       + 
Sbjct: 893  CNKKTIESLIKAGAFDSLQHPRKGLLAVHADAIDAYADVKRKEAVGQYDLFGAGFGEADT 952

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--- 988
            G  +  + +      +   +   E+ +LG Y S HPL   + +L                
Sbjct: 953  GGSTTVMPVIGEGEWDKRDKLAFEREMLGLYVSDHPLFGLEHVLGAAADTTIAALSEEGT 1012

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               G  + LA ++   Q++ T++G      T  + A   E  FFP
Sbjct: 1013 VPDGAVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1057


>gi|207723766|ref|YP_002254164.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            MolK2]
 gi|206588970|emb|CAQ35932.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            MolK2]
          Length = 1174

 Score = 1011 bits (2614), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1062 (38%), Positives = 606/1062 (57%), Gaps = 53/1062 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SP FVHL++HS YS+++G + L+  +   AAD   A+A+TD  N F  + F ++A   G
Sbjct: 2    NSPRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P++G  + I   D                 ++LLV   +GY  L  L++R +L +Q +
Sbjct: 62   VKPVVGADVWITNHDE----------RDKPSRLLLLVRNKQGYLNLCTLLARAWLSNQHR 111

Query: 127  QSVRICLSWLQEIG------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                I   W  E G        GL+ L+G   G +  A    +  +A K    + ++F  
Sbjct: 112  GRAEIAPEWFDEPGVEDAPLATGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQ 171

Query: 181  RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR           Q V+LA + +LP+VAT+   F++++D+ AH+  + +A   +
Sbjct: 172  AFYIELQRAGQAGTEAYIQQAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDL 231

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R + + Y K + EM ++F+D+P AL NTV+IA+RC+  L++  P LP F   
Sbjct: 232  LANPRRTRRFSTEQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTP 291

Query: 299  ECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L + A  GLE R   L   A  +     +Y  RL+FE   I +M F G
Sbjct: 292  DGMSL----DDYLVHLAKDGLEKRMEVLFPDAAVREAKRPEYYARLEFETGTIIKMGFPG 347

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 348  YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD +
Sbjct: 408  PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467

Query: 476  CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP  P   V+L+ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 468  AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527

Query: 535  GDRPLSQLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
                L+   P+Y     D   V+Q++   +E  GL+KFDFLGL TLT+L  +  ++    
Sbjct: 528  APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587

Query: 594  V---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  + S IP +D   + +L    T+ +FQLES GM+  L+  +PD  EDIIALV+LY
Sbjct: 588  PSKADWNCSHIPLNDKPAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  A
Sbjct: 648  RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM + +E F  GA+K+G+S   A  IF+L+ KFA YGFNKSHAAAYA
Sbjct: 708  DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVDFK 829
            +++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DA     ++++PP +N     F 
Sbjct: 768  LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFT 827

Query: 830  -VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV A
Sbjct: 828  PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVE 946
            GA D    +R QLL S+          +K       ++F    G  +++    L   +  
Sbjct: 888  GAFDSLNDNRAQLLVSIG--LAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDEAPW 945

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------------TIRG 992
            ++  + + E++ LGFY SGH  D  +  +R+       +                     
Sbjct: 946  STKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGGGYGNRDA 1005

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032
             N  ++ ++V  + + T++G  +  V   + ++    E   F
Sbjct: 1006 RNKTVSGVIVGLRTQMTQRGK-MIVVMLDDGSQSEATEVTVF 1046


>gi|190573488|ref|YP_001971333.1| DNA polymerase III subunit alpha [Stenotrophomonas maltophilia K279a]
 gi|190011410|emb|CAQ45028.1| putative DNA polymerase III, alpha chain [Stenotrophomonas
            maltophilia K279a]
          Length = 1196

 Score = 1011 bits (2614), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1082 (38%), Positives = 609/1082 (56%), Gaps = 77/1082 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLN--------------NILDKIAADQQPAIAITDTN 50
            +  S  FVHL VH+ +SL +  + +               N+L +      PA+A+TD N
Sbjct: 1    MSNS-RFVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRSVELGLPALAVTDLN 59

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            NLF+ ++F + A   GI+PI G         ++ +  +G+ P+     + LL    EGY 
Sbjct: 60   NLFALVKFYKAAEGVGIKPIAGA--------DVLIAEEGQDPW----RMTLLCRDREGYL 107

Query: 111  RLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
             L  L++R ++     +  V I   WL + G   L  L  G      R       ++AE+
Sbjct: 108  SLSRLLTRAWMEGHRPEGGVAIHPDWL-KAGNANLFAL-AGRQSLAGRLALDGKHELAEQ 165

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAY-THELPLVATNNSLFLSEEDYEAH 228
            +L  ++++FGD L++ L R         +Q   +A     LP+VA+N+  FL+  D+ AH
Sbjct: 166  QLADWQRVFGDGLHLELTRTGREGEETFNQFALMAAGQRGLPVVASNDVRFLAPTDFSAH 225

Query: 229  DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            +  + ++   V+    RPR  +   YLK+  EM ++F+D+P+A++NT+ +A RC+  +++
Sbjct: 226  EARVCISTGRVLDDPKRPREYSDQQYLKSAEEMCALFADIPDAIDNTLALAERCNIEMRL 285

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                LP +   + + +    +  ++  +  GLE RL +  +A G   +DY +RL+FELN 
Sbjct: 286  GTYFLPNYPVPDDETL----DTWIQKMSRDGLEERLEKNPLAPGKTREDYFERLEFELNT 341

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERF
Sbjct: 342  IIKMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERF 401

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L  
Sbjct: 402  LNPERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGF 461

Query: 468  PYSQVDRLCKLIPNDPAHPVSL---------QAIADDSRFREARLADPSVDRLLEISQKL 518
            PY  VD + KLIPN     +            +        +    +  V  L++++ +L
Sbjct: 462  PYGLVDGVSKLIPNILGIHLKDALGKGKEGPSSEMASPELIQRYETEDDVRDLIDLALQL 521

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFL 574
            E L R+A  HA G+VIG  PLS+  P+Y +   +     PVTQF+   +E+ GL+KFDFL
Sbjct: 522  EDLTRNAGKHAGGVVIGPEPLSEFCPLYAEHDENGLGKNPVTQFDKNDVEEVGLVKFDFL 581

Query: 575  GLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGM 628
            GL+TLT++  ++  + +R        VD++ IP DD  TY  +     T  +FQ ESSGM
Sbjct: 582  GLRTLTIIDWAVKAINKRHERAGIPPVDIAAIPLDDTPTYKDIFANGNTGAVFQFESSGM 641

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            R+ L+  +PD  ED+IALVSLYRPGP+D I  +N RK+G+E+I+   P  + +LK+T G+
Sbjct: 642  RRLLKDARPDRFEDLIALVSLYRPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGI 701

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++YQEQVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K+G+ +  A  
Sbjct: 702  MVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKDGVDEAKADA 761

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            IF+L+ KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ ++DN +K+  F  +
Sbjct: 762  IFDLMEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDLDNTDKVVGFLDE 821

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLE 866
             R   + ++PP VN     F+        Y L AIKGVG      ++E      PF  L 
Sbjct: 822  VRNLGLTVLPPKVNQSAFMFEAVTPDTIQYGLGAIKGVGQGACEAVVEERLKGGPFKDLL 881

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DFC+RV S KLNRR LE+++  GALD  G +R  L+  L  + K    + + R +   ++
Sbjct: 882  DFCTRVGSAKLNRRTLEAMINCGALDELGRNRASLMLQLPEVIKATDQMARERASGQNSL 941

Query: 927  FAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM------- 978
            F     + +  ++ L +        R   E+  LGFY SGHP D ++  +R +       
Sbjct: 942  FGGPDPSATTIQLDLPEAEEWPLLQRLNGERDTLGFYLSGHPFDPWRDDVRDLVGNDLGS 1001

Query: 979  --------GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                       G              LA  VV  ++    KG    ++   +     E +
Sbjct: 1002 VEKIWSANSGGGGGGEKRWRPEVQTVLAGQVVGVRR----KGESQIFIQLEDGRGRVECS 1057

Query: 1031 FF 1032
             F
Sbjct: 1058 AF 1059


>gi|73542219|ref|YP_296739.1| DNA polymerase III subunit alpha [Ralstonia eutropha JMP134]
 gi|72119632|gb|AAZ61895.1| DNA polymerase III, alpha subunit [Ralstonia eutropha JMP134]
          Length = 1175

 Score = 1011 bits (2614), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1058 (39%), Positives = 612/1058 (57%), Gaps = 51/1058 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P FVHL+VHS YS+++G + L++ +   A+D   A+A+TD  N F  + F ++A   G
Sbjct: 5    SAPRFVHLRVHSEYSVVDGIVRLDDAVKAAASDGMGALALTDLANAFGLIRFYKEARGGG 64

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P++G  + +  +D+     +          ++LLV    GY  L  L+SR +L +Q +
Sbjct: 65   VKPVVGADVWLANEDDRDKPAR----------LLLLVQDRVGYLNLCTLLSRAWLTNQHR 114

Query: 127  QSVRICLSWLQEIG------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                I   W +E G        GLI L+G   G +  A    +   A +    +  +F  
Sbjct: 115  GRAEIEPGWFEEPGEGGQPLATGLIALSGAMGGDVGMALANGNVDAARRAAAHWAAVFPQ 174

Query: 181  RLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            R Y+ LQR  H G D Y   Q V LA   +LP+VAT+   F++ +D+ AH+  + +A   
Sbjct: 175  RFYIELQRAGHPGTDAYV-QQAVHLAAEMQLPVVATHPVQFMTPDDFTAHEARVCIAEGE 233

Query: 239  VVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            +++   R  R T D Y K + EM ++F+D+P AL+N VEIARRC+  L++  P LP F  
Sbjct: 234  LLANPRRTRRFTTDQYFKTQDEMCALFADIPSALQNAVEIARRCNLTLELGKPRLPLFPT 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
             +   +    ++ L   A  GLE RL         +     +Y  RL+FE   I +M F 
Sbjct: 294  PDGMSL----DDYLVFMAKDGLEKRLSVLFPNEAEREAKRPEYYARLEFETGTIIKMGFP 349

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+S
Sbjct: 350  GYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVS 409

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y  VD 
Sbjct: 410  MPDFDIDFCQHGRDRVITYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDG 469

Query: 475  LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            + KLIP  P   V+++ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++
Sbjct: 470  IAKLIPFKPGKLVTIEEAKKEEPLLTERENNEEEVRQLLELAQRVEGMTRNVGMHAGGVL 529

Query: 534  IGDRPLSQLVPMY-----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            I    L+   P+Y      D  S + V+Q++   +E AGL+KFDFLGL TLT+L  +  +
Sbjct: 530  IAPGRLTDFCPLYTQGGQNDGMSGV-VSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERY 588

Query: 589  LAQRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            + +        + S IP DD   + +L T  T+ +FQLES GM+  L+  +PD  EDIIA
Sbjct: 589  IRRLDPSKADWNCSHIPLDDGPAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIA 648

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            LV+LYRPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GY
Sbjct: 649  LVALYRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGY 708

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL  AD+LRRAMGKK  EEM + +  F  GA KNG++   A +IF+L+ KFA YGFNKSH
Sbjct: 709  SLGGADLLRRAMGKKKPEEMAQHRVMFREGADKNGLNAEQADDIFDLMEKFAGYGFNKSH 768

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AAAYA+++Y TAW+K H+P EF+AA+M+L MD+ +K+K   +D +   I ++PP VN   
Sbjct: 769  AAAYALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYEDCKLNKIAVLPPDVNASE 828

Query: 826  VDF-KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F       I Y L  IKG G      I+ A  ++PF  L DFC RVD +++NRR +E+
Sbjct: 829  YRFAPTDAKTIRYGLGGIKGSGQGAIEDILRAREERPFKDLFDFCERVDRRQVNRRTIEA 888

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKF 943
            L+ AGA D    +R QLL S+    + A   +K  +    ++F   +    + +  L   
Sbjct: 889  LIRAGAFDSLNNNRAQLLASVSIAMEAAD--QKAESANQVSLFDLMDDAGEAHRPELIDE 946

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------GNNIR- 996
                     + E++ LG+YFSGH  D  +  +R+            ++      G ++R 
Sbjct: 947  PAWTPKRTLQEEKQALGYYFSGHLFDACRDEVRRFVKSTLAGLEKEVQGNGGGFGRDVRG 1006

Query: 997  --LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +A ++   + + T++G  +  V   +     E   F
Sbjct: 1007 KTIAGVIAGVRTQMTQRGK-MIIVQLDDGTGVVEMTVF 1043


>gi|325129568|gb|EGC52392.1| DNA polymerase III, alpha subunit [Neisseria meningitidis OX99.30304]
          Length = 1144

 Score = 1011 bits (2613), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1034 (38%), Positives = 583/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PHDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQKRLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+SL +A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLSLEKAMETEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + D +       +D+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKNTTGDIIDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    + +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++  +   +       +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQVEIMV 1014


>gi|115380319|ref|ZP_01467326.1| DNA polymerase III alpha subunit [Stigmatella aurantiaca DW4/3-1]
 gi|115362676|gb|EAU61904.1| DNA polymerase III alpha subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 1058

 Score = 1011 bits (2613), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1006 (39%), Positives = 577/1006 (57%), Gaps = 37/1006 (3%)

Query: 52   LFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
            +F+ ++F +KA  AGI+PIIG +  +          +          ++L+   AEGY  
Sbjct: 1    MFATIDFYKKAKDAGIKPIIGMEAYVA-----GTKGREDRSEKVAHHLILVAQNAEGYAN 55

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L  L S  Y+ D      RI    L +  ++GL  LT    G +  A F      A +  
Sbjct: 56   LRYLSSTAYM-DGFYYHPRIDKKVLAQ-HSKGLFALTACLGGEVTSACFRGDMDHARRAA 113

Query: 172  LTFKKLF-GDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              +K +F     ++ +Q +   ++ +    + QL+   ++PL AT ++ ++  ED  AH+
Sbjct: 114  TEYKDIFEPGHFFLEVQSNGIPEQDKANENLKQLSRDLDIPLCATADAHYIKREDARAHE 173

Query: 230  VLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            +LM +A    +S   R R + D  Y+ +  EM+  F D PEA+ NT  IA +C+  L++ 
Sbjct: 174  LLMCIASGKTLSDGKRLRHSTDKLYVTSPQEMLEFFRDTPEAVHNTQVIADQCNLELKLG 233

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNV 347
             P+LP F   +        ++ +   A  GL  R  +       +  + YR RL+ ELNV
Sbjct: 234  KPMLPTFKVPD----SHTPDSFMAELAFEGLHERFKELHHAGAKFDPEMYRARLNLELNV 289

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I +M FSGYFLIV DFI WAKK NIPVGPGRGSGAGS+ AYAL ITD+DPL ++LLFERF
Sbjct: 290  IQKMGFSGYFLIVQDFINWAKKANIPVGPGRGSGAGSLVAYALRITDLDPLPYNLLFERF 349

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPDFDIDFCQDRRDEVI+YV  KYG   V QIITFGSL+AK+ LRDV R   +
Sbjct: 350  LNPERVSMPDFDIDFCQDRRDEVIKYVSQKYGEMNVGQIITFGSLKAKSVLRDVCRVFGL 409

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL----------LEISQK 517
            P+S+ DR+ KL+P      +  +AI  ++R +E      +V  +          LEI+  
Sbjct: 410  PFSEGDRIAKLVPEVLGITLK-EAIEQEARLKEMMEKPSNVGEVEGKPVTTKDVLEIALA 468

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL+R    HAAG+VI D+PL + VP+Y+       +TQF    +E AGL+KFDFLGLK
Sbjct: 469  LEGLHRQPGMHAAGVVIADKPLWEFVPVYQPPGEKTLITQFAKDEVEAAGLVKFDFLGLK 528

Query: 578  TLTLLQKSLDFLAQRGVKV---DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            TLT++Q +LD + +        +   IP  D   + L+    T G+FQ+ESSG  + +  
Sbjct: 529  TLTVIQNALDLINRNPPNGKKLERQDIPLHDELMWKLMADGDTAGVFQMESSGFTEMVMK 588

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            ++P C ED+IA  +LYRPGP+D+ +V  + NRK+G+E +   HP ++P+LK+T GVI+YQ
Sbjct: 589  LKPSCFEDVIAAGALYRPGPLDSGMVDVFINRKHGREPVTYPHPALEPVLKDTYGVIVYQ 648

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQI+Q+L GY+L  AD+LRRAMGKK  E M  ++  F+ G  KN +   +A  IF+L
Sbjct: 649  EQVMQISQVLGGYTLGRADLLRRAMGKKKAEVMQAERAGFLEGCKKNNVDLKVAGEIFDL 708

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA+YGFNKSH+AAY +I+  TAW+K H+PVEF+AA +T E DN +K+ +   +AR+ 
Sbjct: 709  MEKFAEYGFNKSHSAAYGLITIHTAWLKAHFPVEFMAALLTSEKDNTDKVVRHIGEAREA 768

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
              Q++PP VN   + F   D +I + L AI GVG      I+EA  D  F  L DFC RV
Sbjct: 769  GHQVLPPDVNQSDMAFGAVDGKIRFGLGAINGVGEGAIESIVEARKDGFFKGLFDFCERV 828

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            DS+++N++VLE+LV AGA D     R QL ++++         +K++     ++F    G
Sbjct: 829  DSRRVNKKVLEALVKAGAFDFEKRPRRQLFETIERAMNRGSASQKDKAAGQSSLFGMLAG 888

Query: 933  TFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              +      K    +        R   E+  +GFY SGHPL  Y   L++   +      
Sbjct: 889  PAAGGGGGMKDDYAQVEEWPEKERLAFEKDAIGFYVSGHPLHQYDKELKRYA-RPVTSVQ 947

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               R   I +  +V + +++ T+ G R+ WVT  + +   E   FP
Sbjct: 948  RARRDEKITVGGIVAALRERPTKTGKRMAWVTLEDLSGSIELVCFP 993


>gi|83746496|ref|ZP_00943547.1| DNA polymerase III alpha subunit [Ralstonia solanacearum UW551]
 gi|207743808|ref|YP_002260200.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            IPO1609]
 gi|83726827|gb|EAP73954.1| DNA polymerase III alpha subunit [Ralstonia solanacearum UW551]
 gi|206595208|emb|CAQ62135.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            IPO1609]
          Length = 1176

 Score = 1011 bits (2613), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1064 (38%), Positives = 607/1064 (57%), Gaps = 55/1064 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SP FVHL++HS YS+++G + L+  +   AAD   A+A+TD  N F  + F ++A   G
Sbjct: 2    NSPRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P++G  + I   D                 ++LLV   +GY  L  L++R +L +Q +
Sbjct: 62   VKPVVGADVWITNHDE----------RDKPSRLLLLVRNKQGYLNLCTLLARAWLSNQHR 111

Query: 127  QSVRICLSWLQEIG------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                I   W  E G      + GL+ L+G   G +  A    +  +A K    + ++F  
Sbjct: 112  GRAEIAPEWFDEPGVEDAPLSTGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQ 171

Query: 181  RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR           Q V+LA + +LP+VAT+   F++++D+ AH+  + +A   +
Sbjct: 172  AFYIELQRAGQAGTEAYIQQAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDL 231

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R + + Y K + EM ++F+D+P AL NTV+IA+RC+  L++  P LP F   
Sbjct: 232  LANPRRTRRFSTEQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTP 291

Query: 299  ECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L + A  GLE R   L   A  +     +Y  RL+FE   I +M F G
Sbjct: 292  DGMSL----DDYLVHLAKDGLEKRMEVLFPDAAVREAKRPEYYARLEFETGTIIKMGFPG 347

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 348  YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD +
Sbjct: 408  PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467

Query: 476  CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP  P   V+L+ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 468  AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527

Query: 535  GDRPLSQLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
                L+   P+Y     D   V+Q++   +E  GL+KFDFLGL TLT+L  +  ++    
Sbjct: 528  APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587

Query: 594  V---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  + S IP +D   + +L    T+ +FQLES GM+  L+  +PD  EDIIALV+LY
Sbjct: 588  PSKADWNCSHIPLNDKPAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  A
Sbjct: 648  RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM + +E F  GA+K+G+S   A  IF+L+ KFA YGFNKSHAAAYA
Sbjct: 708  DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVDFK 829
            +++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DA     ++++PP +N     F 
Sbjct: 768  LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFT 827

Query: 830  -VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV A
Sbjct: 828  PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVE 946
            GA D    +R QLL S+          +K       ++F    G  +++    L   +  
Sbjct: 888  GAFDSLNDNRAQLLVSIG--LAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDEAPW 945

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA----------------TI 990
            ++  + + E++ LGFY SGH  D  +  +R+       +                     
Sbjct: 946  STKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGNGGGYGNR 1005

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032
               N  ++ ++V  + + T++G  +  V   + ++    E   F
Sbjct: 1006 DARNKTVSGVIVGLRTQMTQRGK-MIVVMLDDGSQSEATEVTVF 1048


>gi|239816093|ref|YP_002945003.1| DNA polymerase III, subunit alpha [Variovorax paradoxus S110]
 gi|239802670|gb|ACS19737.1| DNA polymerase III, alpha subunit [Variovorax paradoxus S110]
          Length = 1172

 Score = 1011 bits (2613), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1050 (39%), Positives = 608/1050 (57%), Gaps = 45/1050 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   ++ ++   AAD+QPA+AITD NNLF A++F ++  + G++P+
Sbjct: 2    FVHLRLHTEFSVVDGTNRIDEVVKAAAADKQPALAITDLNNLFGAVKFYKQGRSKGVKPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-- 128
            IG ++ I+          GK P   +  IVLLV   EGY  L EL++R +  + G+    
Sbjct: 62   IGAEIFIE--------GLGKEP-GVLTRIVLLVQNMEGYLHLSELLARAWTQNVGRGQSQ 112

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                L WLQE+   GLI L+G  +GP+         + A +  L    +F  R Y+ LQR
Sbjct: 113  AACKLEWLQEL-QGGLIALSGAQAGPLGAPLLQGQEERAAELALQLAGMFPHRFYIELQR 171

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
              R  D       V+LA    LP+VAT+   F   +DYEAH+  + ++   ++    R  
Sbjct: 172  AGRPEDEPHVIAAVKLAARLRLPVVATHPVQFAERQDYEAHEARVCISEGEILGNPRRVR 231

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC-DDIQK 305
            + T + Y K+ +EM ++F+D+P AL NTVEIA+RC+  L +  P LP F      + ++ 
Sbjct: 232  KFTEEQYFKSSAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFISEGVRM 291

Query: 306  EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +   R ++  GLE RLA        +      Y +RL+FE+N I  M F GYFLIV D
Sbjct: 292  PIDEFFRQESFLGLEERLAHLYPDPARREAERPRYVERLEFEINTILNMGFPGYFLIVGD 351

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK N  PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 352  FIKWAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDF 411

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI YV++KYG + V+QI TFG++ A+AA+RDVGR L M Y   D + KLIPN 
Sbjct: 412  CQGNRDRVIDYVKDKYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNK 471

Query: 483  PAHPVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            P  PV++Q              AI  + +       +  V  L+E++QKLEG+ R+   H
Sbjct: 472  PGQPVTIQYPPNPKVEGDKNNYAIEMEPQLAARIEKEEEVRMLVELAQKLEGMTRNIGMH 531

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            A G++I    L+   P+Y+   SD  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F
Sbjct: 532  AGGVLIAPGKLTDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAKEF 591

Query: 589  LAQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            + +R    +      I  DD ETY L +   T  +FQ ES GM+  L+  +P  +ED+IA
Sbjct: 592  IVKRHKGQENFAYENIKLDDRETYKLFSEGKTEAVFQFESRGMQGMLKDARPTRLEDLIA 651

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            L +LYRPGP+D I  +  RK+G+E++   HP +  ML ET G+++YQEQVMQ AQ+L GY
Sbjct: 652  LNALYRPGPMDLIPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGY 711

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKS 764
            SL  AD+LRRAMGKK  EEM + +E+F +GA   +GI +  A  IF+L+ KFA YGFNKS
Sbjct: 712  SLGGADLLRRAMGKKKLEEMAEHREKFRAGALSTHGIPQDKADEIFDLMEKFAGYGFNKS 771

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNT 823
            HAAAY++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA + F I   PP VN 
Sbjct: 772  HAAAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAQKNFGITFEPPDVNR 831

Query: 824  PCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRV 881
                F+   ++ I Y L A+KG G      ++ A  +  PF SL DFC R+D +++N+R 
Sbjct: 832  GNYRFEPVTDKVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINKRT 891

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITL 940
            +E+L+ AGA D    +R  L+ S+D  + +             +IF   E G+ + +  L
Sbjct: 892  VEALIKAGAFDSIQQNRASLIASVD--RAFEFAAATEANAAQVDIFGDSEHGSATQEPEL 949

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
               +      R   E+  +GFY SGH  D     +R+   +   + + T       +A +
Sbjct: 950  VDATPWGVKERLTFEKTAVGFYLSGHLFDEVAHEVRRFCKREIGDLMDTREQQ--VIAGI 1007

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            V   +    ++G R+      + +   +A 
Sbjct: 1008 VSDFRVINGQRG-RLAIFKLDDKSDAIDAT 1036


>gi|194288945|ref|YP_002004852.1| DNA polymerase III subunit alpha [Cupriavidus taiwanensis LMG 19424]
 gi|193222780|emb|CAQ68783.1| DNA polymerase III, alpha subunit [Cupriavidus taiwanensis LMG 19424]
          Length = 1170

 Score = 1010 bits (2612), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1058 (39%), Positives = 618/1058 (58%), Gaps = 51/1058 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P FVHL++HS YS+++G + L++ +   AAD   A+A+TD  N F  + + ++A   G
Sbjct: 2    SAPRFVHLRLHSEYSIVDGIVRLDDAVKAAAADGMGALALTDLANAFGLIRYYKEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P++G  + +   ++     +          ++LLV    GY  L  L+SR +L +Q +
Sbjct: 62   VKPVVGADVWLTNAEDRDKPAR----------LLLLVQDRRGYLNLCMLLSRAWLGNQHR 111

Query: 127  QSVRICLSWLQEIG------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                I  +W QE G        GLI L+G   G I  A    ++  A +    +  +F  
Sbjct: 112  GRAEIDPAWFQEPGEDDLPLATGLIALSGAMGGDIGMALANGNADGARRAAQHWAAVFPQ 171

Query: 181  RLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            R Y+ LQR  H G D Y   Q VQLA + +LP+VAT+   F++ +DY AH+  + +A   
Sbjct: 172  RFYIELQRAGHAGTDAYV-QQAVQLAASLQLPVVATHPVQFMTPDDYTAHEARVCIAEGE 230

Query: 239  VVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            +++   R  R T D Y K + EM ++F+D+P ALEN VEIARRC+  L++  P LP F  
Sbjct: 231  LLANPRRTRRFTTDQYFKTQDEMCALFADIPSALENAVEIARRCNLTLELGKPRLPLFPT 290

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
             +   +    ++ L   A  GLE RLA        +     +Y  RL+FE   I +M F 
Sbjct: 291  PDGMSL----DDYLVFMAKEGLEKRLAVLFPDEAVREAKRPEYYARLEFETGTIIKMGFP 346

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+S
Sbjct: 347  GYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVS 406

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y  VD 
Sbjct: 407  MPDFDIDFCQHGRDRVITYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDG 466

Query: 475  LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            + KLIP  P   V+++ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++
Sbjct: 467  IAKLIPFKPGKLVTIEEAKKEEPLLTERERNEEEVRQLLELAQRVEGMTRNVGMHAGGVL 526

Query: 534  IGDRPLSQLVPMY-----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            I    L+   P+Y      D  S + V+Q++   +E AGL+KFDFLGL TLT+L  +  +
Sbjct: 527  IAPGKLTDFCPLYTQGGQNDGMSGV-VSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERY 585

Query: 589  LAQRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            + +        + S IP DD   + +L T  T+ +FQLES GM+  L+  +PD  EDIIA
Sbjct: 586  IRRLDPSKADWNCSHIPLDDGPAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIA 645

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            LV+LYRPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GY
Sbjct: 646  LVALYRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGY 705

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL  AD+LRRAMGKK  EEM + +  F  GA KNG+S   A +IF+L+ KFA YGFNKSH
Sbjct: 706  SLGGADLLRRAMGKKKPEEMAQHRVMFREGADKNGLSAQQADDIFDLMEKFAGYGFNKSH 765

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AAAYA+++Y TAW+K H+P EF+AA+M+L MD+ +K+K   +D +   I ++PP VN   
Sbjct: 766  AAAYALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYEDCKLNKIAVLPPDVNASE 825

Query: 826  VDF-KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F       I Y L  IKG G      I+ A  ++PF  L DFC RVD +++NRR +E+
Sbjct: 826  YRFAPTDPKTIRYGLGGIKGSGQGAIEDILRAREERPFTDLFDFCERVDRRQVNRRTIEA 885

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKF 943
            L+ AGA D    +R QLL S+    + A+  +K  +    ++F          +  L   
Sbjct: 886  LIRAGAFDSLNDNRAQLLASVPIAMEAAE--QKAESANQVSLFDLMGDAGDAHRPELLDE 943

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------GNNIR- 996
               +     + E++ LG+YFSGH  D Y+  +R+            ++      G ++R 
Sbjct: 944  PRWSPKRTLQEEKQALGYYFSGHLFDAYRDEVRRFNKGTLAGLEKEVQGNGGGFGRDVRG 1003

Query: 997  --LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +A ++   + + T++G  +  VT  +     E   F
Sbjct: 1004 KTIAGVISGMRTQMTQRGK-MLIVTLDDGTGLVEMTVF 1040


>gi|296454472|ref|YP_003661615.1| DNA polymerase III subunit alpha [Bifidobacterium longum subsp.
            longum JDM301]
 gi|296183903|gb|ADH00785.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
            longum JDM301]
          Length = 1185

 Score = 1010 bits (2612), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/1067 (32%), Positives = 549/1067 (51%), Gaps = 56/1067 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++P
Sbjct: 7    NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 66

Query: 70   IIGCQLDIDMQ------DNLKMTNQGKTPFPT-----VPSIVLLVSTAEGYQRLIELVSR 118
            IIG +  +  +        +    + +          +  + +     EG   LI+  S 
Sbjct: 67   IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 126

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L  +  +  R+    L    ++G+I  +G  SG I           A +    F+ +F
Sbjct: 127  ANLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIF 185

Query: 179  -GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
              D  ++ L  H    +      ++ +A     PL+ATN+S ++  ED +A D ++ +  
Sbjct: 186  GKDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINS 245

Query: 237  STVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP--ILP 293
             + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H     +P
Sbjct: 246  GSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLAIAERCNVMFDDHEDGAFMP 305

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            +F   E  D    E +    K   GLE R        G    D  ++ D+E  VI +M+F
Sbjct: 306  KFPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQF 355

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+
Sbjct: 356  CGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERV 415

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            S+PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  +
Sbjct: 416  SLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGE 475

Query: 474  RLCKLIPN--DPAHPVSL--------QAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            ++ K +P        +SL        +  A+   FRE   +DP   R+ E ++ +EGL R
Sbjct: 476  KVTKALPPAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLIR 535

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
                HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  LT++ 
Sbjct: 536  QTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIH 594

Query: 584  KSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             +L  + A     +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++PD   D
Sbjct: 595  DTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFND 654

Query: 643  IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVM 696
            I AL++LYRPGP+  D+   Y  RKNG +KI  IHP ++     +L ET G+IIYQEQV 
Sbjct: 655  ISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQ 714

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
              A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  ++++L  F
Sbjct: 715  SAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPF 774

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            + Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  IQ+
Sbjct: 775  SGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQV 834

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDS 874
            + P VN    ++    + + + L AI+ VG      I+         F +  DF  RV  
Sbjct: 835  LSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPL 894

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
              LNRR++ESL+ AGA D    +R  L    +        +++ +     ++F+  +   
Sbjct: 895  TALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGG 954

Query: 935  SDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
            ++      +T+      +   +   E+ +LG Y S HPL   + IL  +        V  
Sbjct: 955  AEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDR 1014

Query: 990  IR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +    G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1015 AKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061


>gi|212715528|ref|ZP_03323656.1| hypothetical protein BIFCAT_00426 [Bifidobacterium catenulatum DSM
            16992]
 gi|212660895|gb|EEB21470.1| hypothetical protein BIFCAT_00426 [Bifidobacterium catenulatum DSM
            16992]
          Length = 1196

 Score = 1010 bits (2612), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/1084 (31%), Positives = 557/1084 (51%), Gaps = 68/1084 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S +FV L  H+ YSLL+GA  + +++ +      PA+ ITD  N+  A E    A  
Sbjct: 1    MATSGNFVQLHNHTHYSLLDGASKIPDLVKRAKELNMPAVGITDHGNMHGAYEMWSTAVK 60

Query: 65   AGIQPIIGCQLDIDMQD--------------NLKMTNQGKTPFPT-------VPSIVLLV 103
             G++PIIG +  +  +               N  +  Q +   P        +  + +  
Sbjct: 61   EGVKPIIGIEAYVTPETARQDQTRVSWDTNWNPDIDPQHRRRNPNDVSGGGLITHLTMWA 120

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
             T EG   L++  +   L  +  +  R+    L +  ++G+I  +G  SG I        
Sbjct: 121  ETDEGLVNLMKASTDANLEGRVMRYPRMDKEILAKY-SKGIIASSGCPSGIIQTRLLLGQ 179

Query: 164  SQVAEKRLLTFKKLF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLS 221
               A +     + +F  D  Y+    H    ++     ++ +A     PL+ATN+S ++ 
Sbjct: 180  FDEALRAAGELQDIFGRDNFYIEFMDHGLKIEKQVTDGLLDIAKKLNAPLLATNDSHYVR 239

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARR 280
             ED  + D ++ +   + + +  R +     +YLK+  EM  +F D+PEA +NT+EIA R
Sbjct: 240  AEDAGSQDAMLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDIPEACDNTLEIAER 299

Query: 281  CSFILQVHAP--ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
            C+ +   H     +P+F   E  D    E +    K   GLE R        G+   +  
Sbjct: 300  CNVMFDDHEDGAFMPQFDCPEGWD----ETSLFLRKVEEGLEQRY------DGHPPIEVL 349

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            ++ D+E  VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP+
Sbjct: 350  KQADYECGVICQMQFCGYFLVVADYINWAKSHGVMVGPGRGSAAGAMVAYAMGITELDPI 409

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
            +  L+FERFLNP+R+S+PD D+DF  D R  V+ YV +KYG ++VAQ + +G+++ K AL
Sbjct: 410  KHGLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGDKYGRDKVAQCVIYGTIKTKQAL 469

Query: 459  RDVGRALQMPYSQVDRLCKLIPN--DPAHPVSL--------QAIADDSRFREARLADPSV 508
            +D  R +   +S  +R+ K +P        + L        +  A+   FRE   +DP  
Sbjct: 470  KDSARIMGYEFSMGERITKALPPAQTGGKDIPLRDIFEPTSKRYAEAREFRELYDSDPDA 529

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
             R+ + +  +EGL R    HA   ++G  P+S   P+  +       T       E  GL
Sbjct: 530  KRVTDEAMGIEGLIRQTGVHACATIMGSEPISNTSPL-LERTDGTVTTTLEYHTCETLGL 588

Query: 569  IKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            +K DFLGL  LT+++ +L+ + A    ++D + IP DD  TY LL+   TLG+FQL+S G
Sbjct: 589  VKMDFLGLSNLTVIRDTLNNIEANGKERIDHTKIPLDDRATYDLLSRGDTLGVFQLDSDG 648

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPM 681
            MR  L+ ++P+   DI AL++LYRPGP+D      Y  RKNG +KI  IHP     +  +
Sbjct: 649  MRSLLKTLKPNNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEV 708

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L ET G+I+YQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G 
Sbjct: 709  LDETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGY 768

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            S+  A  ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K
Sbjct: 769  SQEAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDK 828

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS--AD 859
               +  +AR+  IQ++ P VN    ++    + + + L AI+ VG      I++    + 
Sbjct: 829  TALYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGKAAVDAIVKERDGSH 888

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
              + +  DF  RV  + LNRR++ESL+ AGA D    +R  L    +        +++ +
Sbjct: 889  GRYVNFPDFIKRVPMEALNRRLVESLIKAGAFDSIDPNRRALFTIHEAAINSVVGLKRKQ 948

Query: 920  TNKHENIFAHEKGTFSDK-------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
                 ++FA  + +  D        +++      +   +   E+ +LG Y S HPL   +
Sbjct: 949  AEGQFDLFADLEDSGEDDAGMGDAMVSVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQ 1008

Query: 973  PILRKMGIKGYEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             IL  +        +        G  + +A ++ +  ++ ++KG+    VT  +     +
Sbjct: 1009 SILVSLSEMSIAHLIDRAANMPDGQQVTVAGLITNVDRRVSKKGNPWAIVTIEDLESSIQ 1068

Query: 1029 ANFF 1032
              FF
Sbjct: 1069 CMFF 1072


>gi|325141631|gb|EGC64093.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 961-5945]
 gi|325141663|gb|EGC64124.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 961-5945]
 gi|325141697|gb|EGC64157.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 961-5945]
          Length = 1144

 Score = 1010 bits (2612), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1034 (38%), Positives = 582/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKTCRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTAAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDYLIKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+ L  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       VD+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIVDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++  +   +       +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQVEIMV 1014


>gi|325135612|gb|EGC58229.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M0579]
          Length = 1144

 Score = 1010 bits (2612), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1034 (38%), Positives = 584/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQKRLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+SL +A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLSLEKAMETEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + D +       +D+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKNTTGDIIDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    + +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++  +   +       +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQVEIMV 1014


>gi|312132448|ref|YP_003999787.1| dnae [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773120|gb|ADQ02608.1| DnaE [Bifidobacterium longum subsp. longum BBMN68]
          Length = 1185

 Score = 1010 bits (2612), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/1067 (32%), Positives = 549/1067 (51%), Gaps = 56/1067 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++P
Sbjct: 7    NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 66

Query: 70   IIGCQLDIDMQ------DNLKMTNQGKTPFPT-----VPSIVLLVSTAEGYQRLIELVSR 118
            IIG +  +  +        +    + +          +  + +     EG   LI+  S 
Sbjct: 67   IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 126

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L  +  +  R+    L    ++G+I  +G  SG I           A +    F+ +F
Sbjct: 127  ANLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIF 185

Query: 179  -GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
              D  ++ L  H    +      ++ +A     PL+ATN+S ++  ED +A D ++ +  
Sbjct: 186  GKDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINS 245

Query: 237  STVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP--ILP 293
             + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H     +P
Sbjct: 246  GSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLAIAERCNVMFDDHEDGAFMP 305

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            +F   E  D    E +    K   GLE R        G    D  ++ D+E  VI +M+F
Sbjct: 306  KFPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQF 355

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+
Sbjct: 356  CGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERV 415

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            S+PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  +
Sbjct: 416  SLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGE 475

Query: 474  RLCKLIPN--DPAHPVSL--------QAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            ++ K +P        +SL        +  A+   FRE   +DP   R+ E ++ +EGL R
Sbjct: 476  KVTKALPPAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLIR 535

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
                HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  LT++ 
Sbjct: 536  QTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIH 594

Query: 584  KSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             +L  + A     +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++PD   D
Sbjct: 595  DTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFND 654

Query: 643  IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVM 696
            I AL++LYRPGP+  D+   Y  RKNG +KI  IHP ++     +L ET G+IIYQEQV 
Sbjct: 655  ISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQ 714

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
              A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  ++++L  F
Sbjct: 715  SAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPF 774

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            + Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  IQ+
Sbjct: 775  SGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQV 834

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDS 874
            + P VN    ++    + + + L AI+ VG      I+         F +  DF  RV  
Sbjct: 835  LSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPL 894

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
              LNRR++ESL+ AGA D    +R  L    +        +++ +     ++F+  +   
Sbjct: 895  TALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGG 954

Query: 935  SDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
            ++      +T+      +   +   E+ +LG Y S HPL   + IL  +        V  
Sbjct: 955  AEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDR 1014

Query: 990  IR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +    G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1015 AKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061


>gi|224282597|ref|ZP_03645919.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum NCIMB
            41171]
 gi|310287058|ref|YP_003938316.1| DNA polymerase III, alpha subunit [Bifidobacterium bifidum S17]
 gi|313139756|ref|ZP_07801949.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum NCIMB
            41171]
 gi|309250994|gb|ADO52742.1| DNA polymerase III, alpha subunit [Bifidobacterium bifidum S17]
 gi|313132266|gb|EFR49883.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum NCIMB
            41171]
          Length = 1189

 Score = 1010 bits (2611), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1074 (32%), Positives = 554/1074 (51%), Gaps = 63/1074 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  H+ YSLL+GA  + +++ ++     PA+ ITD  N+  A E  + A  +G++P
Sbjct: 4    NFVQLHNHTHYSLLDGASKVPDLVKRVKELGMPAVGITDHGNMHGAYELWRAAVDSGVKP 63

Query: 70   II------------------GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
            II                      +              +    +  + +     EG   
Sbjct: 64   IIGIEAYVTPETARQDKTRVSWDTNWTPVPGHARNPDDVSGGGLITHLTMWAENDEGLVN 123

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            LI+  S   L  +  +  R+    L    ++G+I  +G  SG I           A +  
Sbjct: 124  LIKASSVANLEGRVMRYPRMDKEVLSTY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAA 182

Query: 172  LTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              F+ +F  D  Y+ L  H    +      ++ +A     PL+ATN+S ++ E D +A D
Sbjct: 183  GEFQDIFGKDNFYIELMDHGLSIESKVTGDLLTIAKKLGAPLLATNDSHYVMEADKDAQD 242

Query: 230  VLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             ++ +     +   +R +     +Y+K+  EM  +F D P+A +NT+EIA RC+ I   H
Sbjct: 243  AMLCINSGATLDDPNRFKFEGSGYYIKSAEEMRELFKDHPDACDNTLEIAERCNVIFDDH 302

Query: 289  AP--ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                 +P+F   E  D    E +    K   GLE R        G    +  ++ D+E  
Sbjct: 303  EDGAFMPQFDCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPMEVLKQADYECG 352

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI +M+F GYFL+VAD+I WAK++ + VGPGRGS AG++ AYA+ IT++DPL+  L+FER
Sbjct: 353  VICQMQFCGYFLVVADYINWAKEHGVMVGPGRGSAAGAMVAYAMGITELDPLKHGLIFER 412

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+S+PD D+DF  + R  V+ YV +KYGH++VAQ + +G+++ K AL+D  R + 
Sbjct: 413  FLNPERVSLPDIDVDFDPEGRMRVLGYVADKYGHDKVAQCVIYGTIKTKQALKDSARIMG 472

Query: 467  MPYSQVDRLCKLIP-------NDPAHPV---SLQAIADDSRFREARLADPSVDRLLEISQ 516
             P+    R+ + +P       +   H +   S +  A+   +RE   +DP V R+ E ++
Sbjct: 473  FPFEMGTRITEALPPAATGGKDISVHDIFDPSAKRYAEAREYRELYDSDPEVKRITEEAK 532

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             +EGL R    HA   ++G  P++   P+  +       T F     E  GL+K DFLGL
Sbjct: 533  GIEGLIRQTGVHACATIMGSAPITDTSPL-LERTDGTVTTTFEYHTCETLGLVKMDFLGL 591

Query: 577  KTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
              LT+++ +L  +   G   +D + IP DD ETY LL+   TLG+FQL+S GMR  L+ +
Sbjct: 592  SNLTVIRDTLTNIEHNGKGVIDYTKIPLDDRETYQLLSRGDTLGVFQLDSDGMRSLLKTL 651

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVI 689
            +PD   DI AL++LYRPGP+  D+   Y  RKNG +KI  IHP +D     +L ET G+I
Sbjct: 652  KPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELDEPLKQVLDETYGLI 711

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            IYQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  A  I
Sbjct: 712  IYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEAAEAI 771

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +E+L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N  K   +  +A
Sbjct: 772  WEILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKNKTALYLGEA 831

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLED 867
            R+  IQ++ P VN    ++    + + + L AI+ VG    + I+         + +  D
Sbjct: 832  RRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGENAVKDIIAERETGRGKYVNFMD 891

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F  RV    LNRR++ESL+ AGA D    +R  L    ++       +++ +     ++F
Sbjct: 892  FIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHESAIDSVVGLKRKQAEGQFDLF 951

Query: 928  AHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
            +  + + +D      + +      +   + + E+ +LG Y S HPL   + +L  M    
Sbjct: 952  SDTEDSGADAMGDATVAVPDIEEWDKKDKLKFERDMLGLYVSDHPLSGMQAVLAGMREMS 1011

Query: 983  YEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +        G  + LA ++ +  ++ ++KG+    VT  +     +  FF
Sbjct: 1012 IAHLIDRAPTMPSGQQVTLAGLITNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065


>gi|300690877|ref|YP_003751872.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum PSI07]
 gi|299077937|emb|CBJ50577.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum PSI07]
          Length = 1174

 Score = 1010 bits (2611), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1062 (38%), Positives = 603/1062 (56%), Gaps = 53/1062 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SP FVHL++HS YS+++G + L+  +   AAD   A+A+TD  N F  + F ++A   G
Sbjct: 2    NSPRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P++G  + I   D      +          ++LLV   +GY  L  L++R +L +Q +
Sbjct: 62   VKPVVGADVWITNHDERDKPGR----------LLLLVRNKQGYLNLCMLLARAWLSNQHR 111

Query: 127  QSVRICLSWLQEIG------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                I   W  E G        GL+ L+G   G I  A    +  +A K    +  +F +
Sbjct: 112  GRAEIAPEWFGEPGVEDAPLATGLLALSGAMGGDIGMALANGNEALARKLAAQWSSVFPE 171

Query: 181  RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR           + V+LA +  LP+VAT+   F++ +D+ AH+  + +A   +
Sbjct: 172  AFYIELQRAGQAGTEAYVQRAVKLAASMHLPVVATHPVQFMTPDDFTAHEARVCIAEGDL 231

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R R  T D Y K + EM ++F+D+P AL N V+IA+RC+  L++  P LP F   
Sbjct: 232  LANPRRARRFTTDQYFKTQDEMCALFADIPSALANAVQIAQRCNLTLELGKPKLPLFPTP 291

Query: 299  ECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L + A  GLE R   L      +     +Y  RL+FE   I +M F G
Sbjct: 292  DGMSL----DDYLAHLAKQGLEQRMEVLFPDPAVREAKRPEYYARLEFETGTIIKMGFPG 347

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 348  YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD +
Sbjct: 408  PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467

Query: 476  CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP  P   V+L+ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 468  AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527

Query: 535  GDRPLSQLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-- 591
                L+   P+Y     D   V+Q++   +E  GL+KFDFLGL TLT+L  +  ++    
Sbjct: 528  APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  + S IP  D   + +L T  T+ +FQLES GM+  L+  +PD  EDIIALV+LY
Sbjct: 588  PSRADWNCSHIPLTDKAAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  A
Sbjct: 648  RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM + +  F +GA+K+G++   A  IF+L+ KFA YGFNKSHAAAYA
Sbjct: 708  DLLRRAMGKKKAEEMAEHRALFRAGAAKDGLTTEKADEIFDLMEKFAGYGFNKSHAAAYA 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVDFK 829
            +++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DA     ++++PP +N     F 
Sbjct: 768  LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDAEGKNGLKVLPPDINASQYRFT 827

Query: 830  -VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  + Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV A
Sbjct: 828  PTDAKTLRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVE 946
            GA D    +R QLL S+          +K       ++F    G  +++    L   +  
Sbjct: 888  GAFDSLNDNRAQLLVSIG--LAMEAAEQKAAAANQVSLFDLMSGDDAEEHRPELLDEAPW 945

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------------TIRG 992
             +  + + E++ LGFY SGH  D  +  +R+       +                 +   
Sbjct: 946  TTKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGGGYGSRDA 1005

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032
             N  +A ++V  + + T++G  +  V   + ++    E   F
Sbjct: 1006 RNKTVAGVIVGLRTQMTQRGK-MIVVMLDDGSQSEATEVTVF 1046


>gi|311063925|ref|YP_003970650.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum PRL2010]
 gi|310866244|gb|ADP35613.1| DnaE DNA polymerase III alpha subunit [Bifidobacterium bifidum
            PRL2010]
          Length = 1192

 Score = 1010 bits (2611), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1080 (32%), Positives = 557/1080 (51%), Gaps = 64/1080 (5%)

Query: 5    LEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +E+   +FV L  H+ YSLL+GA  + +++ ++     PA+ ITD  N+  A E  + A 
Sbjct: 1    MERMAGNFVQLHNHTHYSLLDGASKVPDLVKRVKELGMPAVGITDHGNMHGAYELWRAAV 60

Query: 64   AAGIQPII------------------GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
             +G++PII                      +              +    +  + +    
Sbjct: 61   DSGVKPIIGIEAYVTPETARQDKTRVSWDTNWTPVPGHARNPDDVSGGGLITHLTMWAEN 120

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
             EG   LI+  S   L  +  +  R+    L    ++G+I  +G  SG I          
Sbjct: 121  DEGLVNLIKASSVANLEGRVMRYPRMDKEVLSTY-SKGVIASSGCPSGIIQTRLRLGQFD 179

Query: 166  VAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEE 223
             A +    F+ +F  D  Y+ L  H    +      ++ +A     PL+ATN+S ++ E 
Sbjct: 180  EALRAAGEFQDIFGKDNFYIELMDHGLSIESKVTGDLLTIAKKLGAPLLATNDSHYVMEA 239

Query: 224  DYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
            D +A D ++ +     +   +R +     +Y+K+  EM  +F D P+A +NT+EIA RC+
Sbjct: 240  DKDAQDAMLCINSGATLDDPNRFKFEGSGYYIKSAEEMRELFKDHPDACDNTLEIAERCN 299

Query: 283  FILQVHAP--ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             I   H     +P+F   E  D    E +    K   GLE R        G    +  ++
Sbjct: 300  VIFDDHEDGAFMPQFDCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPMEVLKQ 349

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
             D+E  VI +M+F GYFL+VAD+I WAK++ + VGPGRGS AG++ AYA+ IT++DPL+ 
Sbjct: 350  ADYECGVICQMQFCGYFLVVADYINWAKEHGVMVGPGRGSAAGAMVAYAMGITELDPLKH 409

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             L+FERFLNP+R+S+PD D+DF  + R  V+ YV +KYGH++VAQ + +G+++ K AL+D
Sbjct: 410  GLIFERFLNPERVSLPDIDVDFDPEGRMRVLGYVADKYGHDKVAQCVIYGTIKTKQALKD 469

Query: 461  VGRALQMPYSQVDRLCKLIP-------NDPAHPV---SLQAIADDSRFREARLADPSVDR 510
              R +  P+    R+ + +P       +   H +   S +  A+   +RE   +DP V R
Sbjct: 470  SARIMGFPFEMGTRITEALPPAATGGKDISVHDIFDPSAKRYAEAREYRELYDSDPEVKR 529

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            + E ++ +EGL R    HA   ++G  P++   P+  +       T F     E  GL+K
Sbjct: 530  ITEEAKGIEGLIRQTGVHACATIMGSAPITDTSPL-LERTDGTVTTTFEYHTCETLGLVK 588

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             DFLGL  LT+++ +L  +   G   +D + IP DD ETY LL+   TLG+FQL+S GMR
Sbjct: 589  MDFLGLSNLTVIRDTLTNIEHNGKGVIDYTKIPLDDRETYQLLSRGDTLGVFQLDSDGMR 648

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLK 683
              L+ ++PD   DI AL++LYRPGP+  D+   Y  RKNG +KI  IHP +D     +L 
Sbjct: 649  SLLKTLKPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELDEPLKQVLD 708

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+IIYQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+
Sbjct: 709  ETYGLIIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSE 768

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
              A  I+E+L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N  K  
Sbjct: 769  EAAEAIWEILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKNKTA 828

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA--DKP 861
             +  +AR+  IQ++ P VN    ++    + + + L AI+ VG    + I+         
Sbjct: 829  LYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGENAVKDIIAERETGRGK 888

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + +  DF  RV    LNRR++ESL+ AGA D    +R  L    ++       +++ +  
Sbjct: 889  YVNFMDFIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHESAIDSVVGLKRKQAE 948

Query: 922  KHENIFAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
               ++F+  + + +D      + +      +   + + E+ +LG Y S HPL   + +L 
Sbjct: 949  GQFDLFSDTEDSSADAMGDATVAVPDIEEWDKKDKLKFERDMLGLYVSDHPLSGMQAVLA 1008

Query: 977  KMGIKGYEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             M        +        G  + LA ++ +  ++ ++KG+    VT  +     +  FF
Sbjct: 1009 GMREMSIAHLIDRAPTMPSGQQVTLAGLITNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1068


>gi|229820885|ref|YP_002882411.1| DNA polymerase III, alpha subunit [Beutenbergia cavernae DSM 12333]
 gi|229566798|gb|ACQ80649.1| DNA polymerase III, alpha subunit [Beutenbergia cavernae DSM 12333]
          Length = 1190

 Score = 1010 bits (2611), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1072 (34%), Positives = 572/1072 (53%), Gaps = 61/1072 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YS+L+GA  + +++ ++ A  Q A+AITD   LF A +F ++A AAGI+P
Sbjct: 9    DFVHLHVHTDYSMLDGAARVPDLVAEVKAQGQSAVAITDHGYLFGAYDFWKRARAAGIKP 68

Query: 70   IIGCQLDIDM------QDNLKMTNQGKTPFP-----TVPSIVLLVSTAEGYQRLIELVSR 118
            IIG +  +        +  ++   + +             + L+  T  G   L  + S 
Sbjct: 69   IIGLEAYVTPGTARQDRSRVRWGERDQVGDDVAGGGAYTHLTLVSETTAGMHNLFRMGSL 128

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L        RI    +    ++GLI  +G  SG I           A +     + +F
Sbjct: 129  ASLEG-YYFKPRIDRELMTRY-SDGLIAFSGCPSGEIQTRLRLGQWDEAVRAAAELQDIF 186

Query: 179  -GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
              D  Y+ L  H    ++    Q+++LA     PLVATN+  ++ +ED  AH++L+ V  
Sbjct: 187  GKDSFYIELMDHSLELEKRVAKQLMELAAHLGAPLVATNDLHYVRDEDEHAHELLLCVQS 246

Query: 237  STVVSQK------DRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
            ++++S        +R  ++ D +Y+++ +EM  +F++LPEA +NT+ IA RC        
Sbjct: 247  NSLMSDPTYEQGGNRFALSGDGYYVRSSAEMRRLFAELPEACDNTLAIAERCEVEFTEQV 306

Query: 290  P-ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +P F     +D    E +    +   GL  R  +         +D  Q+  +E+ VI
Sbjct: 307  GRYMPHFPVPPGED----EISLFVKEVERGLVSRFGEHV------PEDVAQQAKYEIEVI 356

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
                ++GY+L+VADFI WAK+N+I VGPGRGSGAGS+ AYA+ IT++DPL   L+FERFL
Sbjct: 357  TSKGYAGYYLVVADFINWAKRNSIRVGPGRGSGAGSMAAYAMGITELDPLSNGLIFERFL 416

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+RMS+PDFDIDF + RR EVIRYV  KYG E VA I+T+G+++AK +L+D GR L  P
Sbjct: 417  NPERMSLPDFDIDFDERRRGEVIRYVTQKYGEENVASIVTYGTIKAKQSLKDSGRVLGYP 476

Query: 469  YSQVDRLCKLIPND-PAHPVSL--------QAIADDSRFREARLADPSVDRLLEISQKLE 519
            ++  ++L K +P       VSL        +  A+ + FR     DP   ++ + ++ +E
Sbjct: 477  FAMGEKLTKAMPPALMGKDVSLSGIFDPEDKRYAEAAEFRTLYETDPDARKVTDAAKGIE 536

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAGI+I   PL  ++P+ R       +TQ +    E  GL+K DFLGL+ L
Sbjct: 537  GLKRQWGVHAAGIIISSEPLIDVIPIMRRDSDGAIITQIDFPAGEDLGLVKMDFLGLRNL 596

Query: 580  TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T+L+ +L  +       V +  +P DD  TY LL    TLG+FQL+ SGMRQ L  M+PD
Sbjct: 597  TILEDALVNIGINGKPDVVIEDVPLDDAATYELLGRAETLGVFQLDGSGMRQLLRLMRPD 656

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQ 692
              EDI A+ +LYRPGP+  ++   Y  RKNG + IV IHP +    + +L  T G+I+YQ
Sbjct: 657  NFEDISAVGALYRPGPMGANSHTNYALRKNGLQDIVPIHPELAGPLEEVLGPTYGLIVYQ 716

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM IAQ L+GY+L EAD+LRRAMGKK KE +DK+   F +G  + G S+     ++++
Sbjct: 717  EQVMAIAQHLAGYTLGEADLLRRAMGKKKKEILDKEYVPFSNGMKERGYSEGAIKALWDV 776

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  F+DY FNK+H+AAY +ISY TA++K +Y VE++AA +T   D+ +K   +  + R  
Sbjct: 777  LVPFSDYAFNKAHSAAYGLISYWTAYLKVNYRVEYMAALLTSTRDDKDKSALYLNECRHL 836

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
             I ++PP VN    +F      I + LAA++ VG      I +A  +   F S  DF  +
Sbjct: 837  GITVLPPDVNDSAANFTPVGEDIRFGLAAVRNVGANVVEAIAKAREEKGAFTSFTDFLDK 896

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V +   N+R +ESLV AGA D  G++R  LL   +        V++       ++FA   
Sbjct: 897  VPAVVCNKRTIESLVKAGAFDALGHTRRSLLLVHEQAVDAVIGVKRKEAEGQFDLFASLG 956

Query: 932  GTFSD--------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            G   D         + +      +   +   E+++LG Y S HPL   + +L        
Sbjct: 957  GPADDAAGSVASFAVEIPDLPEWDKKQKLSFERQMLGLYVSDHPLAGVEHVLTAAADVSV 1016

Query: 984  EESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +   A   G+ + +A ++ S Q K +++G+    V   +     E  FF
Sbjct: 1017 ATLLADEARPDGSTVTIAGLITSLQVKVSKQGNPWAAVVIEDLEGSIEVMFF 1068


>gi|319409850|emb|CBY90162.1| DNA polymerase III alpha subunit [Neisseria meningitidis WUE 2594]
          Length = 1144

 Score = 1009 bits (2610), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1034 (38%), Positives = 582/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKTCRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTAAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDYLIKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+ L  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       VD+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIVDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++  +   +       +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQVEIMV 1014


>gi|325127575|gb|EGC50498.1| DNA polymerase III, alpha subunit [Neisseria meningitidis N1568]
          Length = 1144

 Score = 1009 bits (2610), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1034 (38%), Positives = 584/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F++ +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TPD +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   +     
Sbjct: 234  PRDFTPDQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG---- 289

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 290  LSRDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+SL  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       +D+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIIDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    + +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VRLVDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++     +        +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPTKLDRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQVEIMV 1014


>gi|283783561|ref|YP_003374315.1| DNA polymerase III subunit alpha [Gardnerella vaginalis 409-05]
 gi|283441761|gb|ADB14227.1| DNA polymerase III subunit alpha [Gardnerella vaginalis 409-05]
          Length = 1188

 Score = 1009 bits (2610), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/1070 (32%), Positives = 549/1070 (51%), Gaps = 59/1070 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  H+ YSLL+GA  + +++ +      PA+AITD  N+  A E    A  AGI+P
Sbjct: 7    NFVHLHNHTHYSLLDGASKIPDLVARAKELGMPAVAITDHGNMHGAYEMWSTAVKAGIKP 66

Query: 70   IIGCQLDIDMQ------DNLKMTNQGKTPFPT-----VPSIVLLVSTAEGYQRLIELVSR 118
            IIG +  +  +        +    + +          +  + L      G   L++  S 
Sbjct: 67   IIGIEAYVTPETARQDKSRVHWGTEDQRADDVSGGGLITHMTLWAENDTGLTNLLKASSV 126

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L  +  +  R+    L    ++G+I  +G  SG I         + A +    F+ +F
Sbjct: 127  ANLEGRVMRYPRMDKDVLSTY-SKGVIASSGCPSGIIQTRLRLGQFKEALRAAGEFQDIF 185

Query: 179  -GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
              D  ++ L  H    +      ++++A     PL+ATN+  ++ EED EA D ++ +  
Sbjct: 186  GRDNFFIELMNHGLSIETRVTKDLLEIAKKLNAPLLATNDLHYVHEEDREAQDAMLCINS 245

Query: 237  STVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP--ILP 293
             + +   DR +     +YLK+  +M  +F + PEA +NT+EIARRC+ +         +P
Sbjct: 246  GSRLDDPDRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGEDGAFMP 305

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            +F   E  D    E +    K   GLE R             +  ++ D+E  VI +M+F
Sbjct: 306  QFDCPEGWD----ETSLFLKKVEEGLERRYNNNI------PMEVLKQADYECGVICQMQF 355

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++  L+FERFLNP+R+
Sbjct: 356  CGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLNPERV 415

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            S+PD D+DF  D R +V+ YV  KYG ++VAQ + +G+++ K AL+D  R +   +S  +
Sbjct: 416  SLPDIDVDFDPDGRAKVLEYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGE 475

Query: 474  RLCK-LIPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRH 524
            ++ K L P      +SL  I D+          FRE    DP   R+ E ++ +EGL R 
Sbjct: 476  KITKVLPPAKNGKDMSLHDIFDEKSKRYAEAREFREMYDTDPDTHRITEEAKGIEGLIRQ 535

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  LT+++ 
Sbjct: 536  TGVHACATIMGSEPITNTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTVIRD 594

Query: 585  SLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +L  +   G    D + IP DD  TY LL+   TLG+FQL+S GMR  L  ++PD   DI
Sbjct: 595  TLRNIENNGKDPIDYTKIPLDDKATYQLLSRGDTLGVFQLDSDGMRALLRTLKPDNFNDI 654

Query: 644  IALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQ 697
             AL++LYRPGP+D      Y  RKNG + I+ IHP     +  +L ET G+I+YQEQV  
Sbjct: 655  SALIALYRPGPMDMDSHTNYAKRKNGLQDIIPIHPEVAEPLKEVLDETYGLIVYQEQVQS 714

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
             A++L+GYSL +ADVLRRAMGKK  E + K++  F  G   +G S+  A  ++++L  F+
Sbjct: 715  AARILAGYSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKAHGYSEEAAQAVWDVLVPFS 774

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +  E  N +K   +  +AR+  IQ++
Sbjct: 775  GYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRMGIQVL 834

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSK 875
             P VN   +++    + + + L AI+ VG      I+         F +  DF  RV   
Sbjct: 835  QPDVNESVLEYSAVGDVVRFGLGAIRNVGDKAVNDIITEREGERGRFVNFMDFVQRVPIS 894

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---- 931
             LNRR++ESL+ AGA D    +R  L Q  D        +++ +     ++FA       
Sbjct: 895  ALNRRLVESLIKAGAFDSIDSNRRALFQICDPAIDSVIALKRKQAEGQFDLFADLDSSSD 954

Query: 932  -----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
                 G    +IT+      +   +   E+ +LG Y S HPL     +L  +      + 
Sbjct: 955  SDDDNGMGDMQITVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLADLREMSIAQL 1014

Query: 987  VATI----RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +        G  + +A +V S  ++ +RKG+    VT  +     +  FF
Sbjct: 1015 IDRARTMSDGQQVTIAGLVTSVDRRVSRKGNAWAIVTVEDMESSIQCMFF 1064


>gi|322435813|ref|YP_004218025.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX9]
 gi|321163540|gb|ADW69245.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX9]
          Length = 1176

 Score = 1009 bits (2609), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1060 (38%), Positives = 606/1060 (57%), Gaps = 50/1060 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  ++ ++  +    Q ++A+TD  N+F A+ F   A   GI+PI
Sbjct: 5    FTHLHLHTDYSLLDGACDVDKLVAHVDKIGQKSVAMTDHGNIFGAVHFFNSAKKKGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+L I   ++    ++ K        +++L    EGY+ L+ L S   L     +  R
Sbjct: 65   LGCELYICQAED----HRAKGDGDKYNHLLVLAENQEGYRNLVRLTSEAALHG-FYRKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            +  ++L +  TEGLI  +G  +G + +         A+     F+++F     ++ +Q H
Sbjct: 120  VSKNFLAK-HTEGLIGFSGCLAGEVSQHLMAGDYDKAKTTAGGFEEMFGRGNFFLEVQDH 178

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +   D+     + ++    ++PL+ATN+S ++ ++D  AH+VL+ V  +  ++   R + 
Sbjct: 179  KLAPDKAVIEAMFRMEKDLDIPLIATNDSHYIEDQDARAHEVLLCVQTAGSMNDPKRFKF 238

Query: 249  TPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              + +  K   EM   F D PE L  T++   RC+  L       P F     + +    
Sbjct: 239  DTEEFYIKTAEEMARFFPDHPEVLSRTMQFPERCNLELNKVDNPFPDFPVPAGETL---- 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ------DYRQRLDFELNVIARMKFSGYFLIVA 361
            E+        GL+ R            +      DY  RL+ E++ I  MKF GYF+IV 
Sbjct: 295  ESYFEQVCREGLKKRFETNVAHLERTGKLRKNKTDYEARLNREIDCIKAMKFPGYFMIVW 354

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++A++  IPVGPGRGS AGS+ AY + ITD+DPL+  LLFERFLNP+R+SMPD DID
Sbjct: 355  DFIRYAREQGIPVGPGRGSAAGSLVAYCMEITDVDPLQNELLFERFLNPERISMPDIDID 414

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR EVI YVQ KYG ++VAQIITF ++ AKAA++DVGRAL MPY +VDR+ K+I  
Sbjct: 415  FCMNRRGEVIEYVQRKYGKDQVAQIITFNTMAAKAAIKDVGRALDMPYGEVDRIAKMIQG 474

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +S + + D+    +A  ++P +  L++ + +LEGL R A  HAAG+VI   PL++
Sbjct: 475  RIGVTIS-EVLKDNGPLTKAYESEPQIRELIDTALRLEGLVRGAGVHAAGVVIAPSPLTE 533

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSL 600
            LVP+ R  +S+  VT ++M  IEK GL+K DFLGL TLT++  +L  +   RG  VDL+ 
Sbjct: 534  LVPVTRA-KSEEIVTSYDMGAIEKMGLLKMDFLGLTTLTVIDDALKLIKLTRGEDVDLAT 592

Query: 601  IPFDDHETYHL-LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            I  DD +TY        T G+FQ ES GMR  L   +P+ +ED+ AL +LYRPGPI   +
Sbjct: 593  ISLDDAKTYEQVFHRALTSGVFQFESGGMRDVLRRYKPNTVEDLTALNALYRPGPIQGGM 652

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            V  +  RK G+  +    P ++P+L+ET GV++YQEQVMQI+  L+G+SLS+AD+LRRAM
Sbjct: 653  VDEFIERKWGRRAVEYELPELEPILRETLGVMLYQEQVMQISNKLAGFSLSQADMLRRAM 712

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK   EM KQK +F+ GA++N   K +A NIF+L+AKFA+YGFNKSH+AAYA+++Y TA
Sbjct: 713  GKKDVAEMTKQKVKFMEGAAENKHPKAVAGNIFDLMAKFAEYGFNKSHSAAYALLAYHTA 772

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++KTHY VEF+AA +T E    E + K+  + ++ NI ++PP V      F   D  I +
Sbjct: 773  YLKTHYTVEFMAALLTSETSKPENVVKYISECKEINIAVVPPDVQISQPSFTPQDGAIRF 832

Query: 838  SLAAIKGVGTTTARHIMEAS----ADKP--FDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             LAAIK VG    + I++A     A+    F SL +FC +VD + LN+RVLESL+ AGA+
Sbjct: 833  GLAAIKNVGHNAIQSIIDARGALQAEGKDGFASLWEFCEKVDLRLLNKRVLESLIKAGAM 892

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITLEKFSV 945
            DCFG  R  ++ +LDN    AQ  +K++      +F      +      +    L     
Sbjct: 893  DCFGK-RAAVMAALDNAMDRAQKAQKDKAAGQHGLFFGGIFDSDVPAAGAAVEALPNAPE 951

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE-------ESVATIRG----NN 994
             +   R +NE+ VLGF+ SGHP+D Y+  LR M +           E     RG    N 
Sbjct: 952  WDEHTRLQNEKDVLGFFVSGHPMDKYREKLRNMKVVDTATACEMKPEPQQFRRGGPEPNE 1011

Query: 995  IRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
            I +A ++   +  K+++ G         +   + E   FP
Sbjct: 1012 ISIAGVITGLKVAKSKRSGEMYAQAVLEDTTGKIELICFP 1051


>gi|9105008|gb|AAF83017.1|AE003874_1 DNA polymerase III, alpha chain [Xylella fastidiosa 9a5c]
          Length = 1212

 Score = 1009 bits (2609), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1078 (37%), Positives = 620/1078 (57%), Gaps = 74/1078 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             + SFVHL +H+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 21   STSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNL 80

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  L I              P  T   + LL     GY  L
Sbjct: 81   FALIKFYKAAETVGIKPISGADLLIA------------EPEHTPWGMTLLCRDHAGYLNL 128

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
             +L+SR +L     +  V +   W+++   + L  L G  S    + F    + +AE++L
Sbjct: 129  SQLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIGRHSLA-GQLFAKGRADLAEQQL 186

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++ +FG+ L++ L R         +Q  +Q+A    +P++A+N+  FL   D+ AH+ 
Sbjct: 187  ADWQHVFGNGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEA 246

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + +A   ++    RPR  +   YL++  EM ++F+D+P+AL+NT  +A+RC+  +++  
Sbjct: 247  RVCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGT 306

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +     + +    ++ +R ++  GLE RL +  +A G   +DY  RL+FEL+ I 
Sbjct: 307  YFLPNYPVPNDETL----DSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTII 362

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M FSGYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+ L ITD+DPL ++LLFERFLN
Sbjct: 363  KMGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWTLLITDLDPLPYNLLFERFLN 422

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC +RRDEVI YV  KYG ERV+QIIT+G++ AKA +RDVGR L  PY
Sbjct: 423  PERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPY 482

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADD------SRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIPN     +       +      +   +   A+  V  LL ++++LE L R
Sbjct: 483  GLVDSIAKLIPNTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTR 542

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PL++  P++ +   +     PVTQF+   +E+ GL+KFDFLGL+TL
Sbjct: 543  NAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 602

Query: 580  TLLQKSLDFLAQRGV-----KVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  + +R        VD++ +P DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 603  TIIDWAVKAINKRHARACIDPVDITALPLDDIPTYKDIFASGNTSAVFQFESSGMRRLLK 662

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +  RK+G ++ +   P    +LK+T G+++YQE
Sbjct: 663  DARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQE 722

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+    A  IF+L+
Sbjct: 723  QVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLM 782

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  +AR  N
Sbjct: 783  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLN 842

Query: 814  IQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
            ++++ P++N     F+        Y L AIKGVG +    I++      P+ SL +FC+R
Sbjct: 843  LKVLRPNINHSVYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLNFCTR 902

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930
            V S KLNRR LE+++ AGALD  G +R  ++  L  + K  + + + R +    +F + +
Sbjct: 903  VASAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNPLFGNAD 962

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE----- 985
              T + ++ L +      +     E+  LG YFSGHP D Y+  ++++            
Sbjct: 963  PSTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALER 1022

Query: 986  -SVATIRGN----------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +  RGN          N  LA +VVS ++    KG    +V   +     E + F
Sbjct: 1023 ILGSQQRGNGEKRTWHPEVNTILAGLVVSVRR----KGDSQVFVQLEDGRGRIECSAF 1076


>gi|261378286|ref|ZP_05982859.1| DNA polymerase III, alpha subunit [Neisseria cinerea ATCC 14685]
 gi|269145377|gb|EEZ71795.1| DNA polymerase III, alpha subunit [Neisseria cinerea ATCC 14685]
          Length = 1144

 Score = 1009 bits (2609), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1034 (38%), Positives = 581/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M   FSDLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PRDFTPSQFFIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDYLVKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++  D+L KLIP 
Sbjct: 410  FCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPL 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+ L  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       VD+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIVDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYCFTPYPNMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESIITARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VRLVDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQIEIMV 1014


>gi|299136806|ref|ZP_07029989.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX8]
 gi|298601321|gb|EFI57476.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX8]
          Length = 1177

 Score = 1009 bits (2609), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/1064 (37%), Positives = 607/1064 (57%), Gaps = 50/1064 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  F HL +H+ YSLL+GA  ++ +   +    Q + A+TD  N++ A+ F        +
Sbjct: 2    AAEFTHLHLHTDYSLLDGACDVDKLAKHLVKIGQTSAAMTDHGNIYGAVHFFDAMKKKNL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+GC+L +  +D+ +   +   P      +++L     GY+ L+ L S   L     +
Sbjct: 62   KPILGCELYVCKEDDHRR--EFANPDSKYNHMLVLAENEAGYRNLVRLTSEAALHG-FYK 118

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
              R+  ++L +   EGLI  +G  +G + +       + A+K    ++ +F     ++ +
Sbjct: 119  KPRVSKNFLAK-HVEGLIGFSGCLAGEVSQHLMEGDYEKAKKAAGDYETMFGRGNFFLEI 177

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    D+     + +L    ++PL+ATN+S ++ ++D  AH+VL+ V  +  ++   R
Sbjct: 178  QDHGLEPDKAVTEAMFRLEKDLDIPLIATNDSHYIEDQDSRAHEVLLCVQTAGSMNDPKR 237

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             +  T + Y+K+  EM  +FS  PE    T++   RC   L+      P+F   E +D+ 
Sbjct: 238  FKFDTQEFYIKSADEMHRLFSHAPEVCTRTMQFPERCQLELKAVKNPFPKFDVPEGEDL- 296

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFL 358
               ++       AG   R     +    +G   +   DY  RL+ E++ I +MKF GYF+
Sbjct: 297  ---DSYFEQVCRAGWRHRRETAVKHLEDRGILRKSIADYEARLNREIDCIKQMKFPGYFM 353

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI++AK+ +IPVGPGRGS AGS+ AY + ITD+DPL+  LLFERFLNP+R+SMPD 
Sbjct: 354  IVWDFIRYAKQQSIPVGPGRGSAAGSLVAYVMEITDVDPLQNDLLFERFLNPERVSMPDV 413

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC +RR EVI+YV+ KYG ++VAQIITF ++ AKAA++DVGRAL MPY +VDR+ KL
Sbjct: 414  DIDFCMNRRGEVIKYVREKYGEDQVAQIITFNTMAAKAAIKDVGRALDMPYGEVDRIAKL 473

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP      +  QA+ D     +A   DP +  L++ + +LEGL R A  HAAG+VI  +P
Sbjct: 474  IPATIGITIE-QALKDSPPLAQAYE-DPKIRELIDTALRLEGLVRGAGVHAAGVVIAPQP 531

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597
            L++LVP+ R  + D  VT ++MK +EK GL+K DFLGL TLT++   L  +   RGV VD
Sbjct: 532  LTELVPVTR-TKDDAIVTSYDMKAVEKMGLLKMDFLGLTTLTVIDDCLKLIKSNRGVDVD 590

Query: 598  LSLIPFDDHETYHL-LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            ++ IP DD ETY        T G+FQ ES GMR  L   +P  +ED+ AL +LYRPGPI 
Sbjct: 591  MATIPLDDAETYEKVYHRALTSGVFQFESGGMRDVLRRYKPTTVEDLTALNALYRPGPIQ 650

Query: 657  NIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
              +   +  RK G+  +  + P ++P+LKET GVI+YQEQVMQI+  ++GYSL  AD+LR
Sbjct: 651  GGMIDDFIERKWGRRAVEYLFPELEPILKETLGVIVYQEQVMQISSAIAGYSLGGADLLR 710

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ+  F++GA++    K  A  +F+L+ +FA YGFNKSH+AAYA+++Y
Sbjct: 711  RAMGKKNAEEMAKQRVLFMAGAAERKFHKDRAGQLFDLMEQFAGYGFNKSHSAAYALLAY 770

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TAW+KTHYPVEF+AA +T E    E + K+  + R+ NI ++PP V     +F    + 
Sbjct: 771  HTAWLKTHYPVEFMAALLTSETSKPENVVKYIGECREINIPVVPPDVQISAANFTPAGDS 830

Query: 835  IYYSLAAIKGVGTTTARHIMEASAD------KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            I + LAAIK VG      I++A  +      + F SL +FC +VD + +N+RVLESL  A
Sbjct: 831  IRFGLAAIKNVGHNAIDSIIKAREELQAAGKQGFVSLWEFCDKVDLRLMNKRVLESLCKA 890

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH------EKGTFSDKITLEK 942
            GALD FG  R ++  +LD   + AQ  +++       +F           +   + TL  
Sbjct: 891  GALDAFGP-RARVFAALDKAMERAQKSQRDAAAGQSGLFGMFDDPGPSSASTGGEETLPP 949

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA------------TI 990
                +   R +NE+ VLGF+ SGHP+D Y+  LR M +     +                
Sbjct: 950  APDWDEHTRLQNEKDVLGFFVSGHPMDKYREKLRNMKVVDTATACEMKPEPQVFRRGQAE 1009

Query: 991  RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
            +GN I++A ++   +  K+++ G         +   + +   FP
Sbjct: 1010 QGNEIQIAGVITGLKVAKSKRSGEMYAQAYLEDTVGKIDLIAFP 1053


>gi|77747494|ref|NP_297497.2| DNA polymerase III subunit alpha [Xylella fastidiosa 9a5c]
 gi|14194684|sp|Q9PGU4|DPO3A_XYLFA RecName: Full=DNA polymerase III subunit alpha
          Length = 1193

 Score = 1009 bits (2609), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1078 (37%), Positives = 620/1078 (57%), Gaps = 74/1078 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             + SFVHL +H+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  L I              P  T   + LL     GY  L
Sbjct: 62   FALIKFYKAAETVGIKPISGADLLIA------------EPEHTPWGMTLLCRDHAGYLNL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
             +L+SR +L     +  V +   W+++   + L  L G  S    + F    + +AE++L
Sbjct: 110  SQLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIGRHSLA-GQLFAKGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++ +FG+ L++ L R         +Q  +Q+A    +P++A+N+  FL   D+ AH+ 
Sbjct: 168  ADWQHVFGNGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + +A   ++    RPR  +   YL++  EM ++F+D+P+AL+NT  +A+RC+  +++  
Sbjct: 228  RVCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +     + +    ++ +R ++  GLE RL +  +A G   +DY  RL+FEL+ I 
Sbjct: 288  YFLPNYPVPNDETL----DSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M FSGYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+ L ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWTLLITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC +RRDEVI YV  KYG ERV+QIIT+G++ AKA +RDVGR L  PY
Sbjct: 404  PERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADD------SRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIPN     +       +      +   +   A+  V  LL ++++LE L R
Sbjct: 464  GLVDSIAKLIPNTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PL++  P++ +   +     PVTQF+   +E+ GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRGV-----KVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  + +R        VD++ +P DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINKRHARACIDPVDITALPLDDIPTYKDIFASGNTSAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +  RK+G ++ +   P    +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+    A  IF+L+
Sbjct: 704  QVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  +AR  N
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLN 823

Query: 814  IQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
            ++++ P++N     F+        Y L AIKGVG +    I++      P+ SL +FC+R
Sbjct: 824  LKVLRPNINHSVYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLNFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930
            V S KLNRR LE+++ AGALD  G +R  ++  L  + K  + + + R +    +F + +
Sbjct: 884  VASAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNPLFGNAD 943

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE----- 985
              T + ++ L +      +     E+  LG YFSGHP D Y+  ++++            
Sbjct: 944  PSTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALER 1003

Query: 986  -SVATIRGN----------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +  RGN          N  LA +VVS ++    KG    +V   +     E + F
Sbjct: 1004 ILGSQQRGNGEKRTWHPEVNTILAGLVVSVRR----KGDSQVFVQLEDGRGRIECSAF 1057


>gi|325674398|ref|ZP_08154086.1| DNA-directed DNA polymerase III alpha subunit [Rhodococcus equi ATCC
            33707]
 gi|325554658|gb|EGD24332.1| DNA-directed DNA polymerase III alpha subunit [Rhodococcus equi ATCC
            33707]
          Length = 1178

 Score = 1009 bits (2609), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/1066 (31%), Positives = 548/1066 (51%), Gaps = 51/1066 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL  H+ YS+L+GA  +  +  +       A+ +TD  N++ A EF   A   GI
Sbjct: 2    ADSFVHLHNHTEYSMLDGAAKVGPLFKEAERLGMTAVGMTDHGNMYGASEFYNSAKKHGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIG +  +  +                    +       + ++   + G + L +L S
Sbjct: 62   KPIIGIEAYVAPESRFNTKRVLWGDPSQKSDDVSGSGAYTHMTMVAENSTGLRNLFKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +  Q  +  R+    L     EG+I  TG  SG I         + A +    ++++
Sbjct: 122  LASIEGQLGKWPRMD-EELIATHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI 180

Query: 178  F-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            +  D  ++ L  H    +R     ++ +     +P +ATN+  +++++  E H+ L+ + 
Sbjct: 181  WGKDNFFLELMDHGLSIERRVREGLLSIGRQLGIPPLATNDCHYVTKDAAENHEALLCIQ 240

Query: 236  HSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQV--HAPI 291
                +S   R +   D +YLK+  EM +I+ S++P A +N+V I  R      V  H   
Sbjct: 241  TGKTLSDPTRFKFDGDGYYLKSAEEMRAIWDSEVPGACDNSVLIGERVQPYEDVWQHRDR 300

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +P F   E +     + + L  + + GL+ R   G        ++Y +R ++E+ VI +M
Sbjct: 301  MPIFPVPEGE----TQASWLHKEVMRGLDRRFPAGP------PREYIERAEYEIGVINQM 350

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFL+V D I  A++  I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+
Sbjct: 351  GFPAYFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPE 410

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPY 469
            R+SMPD DIDF   RR E++RY  +K+G ++VAQ+ITFG+++ KAA++D  R    Q  +
Sbjct: 411  RVSMPDIDIDFDDRRRGEMVRYATDKWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPGF 470

Query: 470  SQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEG 520
            +  D++ K +P    A  +S+  I D            R    ++P V ++ + ++ LEG
Sbjct: 471  AIADQITKALPPPIMAKDISVSGITDPEHERYKEAVEVRALIDSNPDVAKIYQTAKGLEG 530

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R+A  HA  +++   PL+  +P+++  +    +T ++    E  GL+K DFLGL+ LT
Sbjct: 531  LIRNAGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLT 590

Query: 581  LLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  +++ +   RGV +DL  +P +D  TY LL    TLG+FQL+ S MR  L  MQP  
Sbjct: 591  VIGDAIENIKANRGVDIDLDTLPLEDPATYELLARGDTLGVFQLDGSAMRDLLRRMQPTG 650

Query: 640  IEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQE 693
             EDI+A+++LYRPGP+       Y +RKNG++ +  IHP ++     +L +T G+I+YQE
Sbjct: 651  FEDIVAVLALYRPGPMGMNAHNDYADRKNGRQDVKPIHPELEEPLKEILADTFGLIVYQE 710

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            Q+MQIAQ ++GYSL +AD+LRRAMGKK KE +D+  + F  G   NG S+     +++ +
Sbjct: 711  QIMQIAQKVAGYSLGQADLLRRAMGKKKKEILDEAYDGFAEGMKANGFSQAAITALWDTV 770

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNKSHAA Y ++S+ TA++K +YP E++A  +T   D+ +K   +  D R+  
Sbjct: 771  LPFAGYAFNKSHAAGYGLVSFWTAYLKANYPSEYMAGLLTSVGDDKDKAAVYLSDCRKMG 830

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV 872
            I ++PP VN   VDF      I + L A++ VG      I+ A  +   F    D+ +++
Sbjct: 831  ITVLPPDVNASRVDFASVGEDIRFGLGAVRNVGANVVGSIIAAREEKGSFTDFSDYLNKI 890

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D+   +++V ESL+ AG  D  G+ R  L+    +        +K       ++F  +  
Sbjct: 891  DALACSKKVTESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAMGQFDLFGGDDA 950

Query: 933  TFSDKITL---EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA- 988
              S              +S  +   E+ +LG Y SGHPL+  + +L           +  
Sbjct: 951  DESITSVFNVKVPDEEWDSKHKLALEREMLGLYVSGHPLNGVEHVLAAQSDTSIPVILEG 1010

Query: 989  -TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                G  + +  ++ S  ++  + G         + +   E  FFP
Sbjct: 1011 DIKDGTQVTVGGILASVNRRINKNGLTWASAQLEDLSGGIEVLFFP 1056


>gi|312140121|ref|YP_004007457.1| DNA polymerase iii alpha subunit dnae1 [Rhodococcus equi 103S]
 gi|311889460|emb|CBH48777.1| DNA polymerase III alpha subunit DnaE1 [Rhodococcus equi 103S]
          Length = 1178

 Score = 1009 bits (2608), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/1066 (31%), Positives = 548/1066 (51%), Gaps = 51/1066 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL  H+ YS+L+GA  +  +  +       A+ +TD  N++ A EF   A   GI
Sbjct: 2    ADSFVHLHNHTEYSMLDGAAKVGPLFKEAERLGMTAVGMTDHGNMYGASEFYNSAKKHGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIG +  +  +                    +       + ++   + G + L +L S
Sbjct: 62   KPIIGIEAYVAPESRFNTKRVLWGDPSQKSDDVSGSGAYTHMTMVAENSTGLRNLFKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +  Q  +  R+    L     EG+I  TG  SG I         + A +    ++++
Sbjct: 122  LASIEGQLGKWPRMD-EELIATHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI 180

Query: 178  F-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            +  D  ++ L  H    +R     ++ +     +P +ATN+  +++++  E H+ L+ + 
Sbjct: 181  WGKDNFFLELMDHGLSIERRVREGLLSIGRQLGIPPLATNDCHYVTKDAAENHEALLCIQ 240

Query: 236  HSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQV--HAPI 291
                +S   R +   D +YLK+  EM +I+ S++P A +N+V I  R      V  H   
Sbjct: 241  TGKTLSDPTRFKFDGDGYYLKSAEEMRAIWDSEVPGACDNSVLIGERVQPYEDVWQHRDR 300

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +P F   E +     + + L  + + GL+ R   G        ++Y +R ++E+ VI +M
Sbjct: 301  MPIFPVPEGE----TQASWLHKEVMRGLDRRFPAGP------PREYIERAEYEIGVINQM 350

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFL+V D I  A++  I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+
Sbjct: 351  GFPAYFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPE 410

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPY 469
            R+SMPD DIDF   RR E++RY  +K+G ++VAQ+ITFG+++ KAA++D  R    Q  +
Sbjct: 411  RVSMPDIDIDFDDRRRGEMVRYATDKWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPGF 470

Query: 470  SQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEG 520
            +  D++ K +P    A  +S+  I D            R    ++P V ++ + ++ LEG
Sbjct: 471  AIADQITKALPPPIMAKDISVSGITDPEHERYKEAVEVRALIDSNPDVAKIYQTAKGLEG 530

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R+A  HA  +++   PL+  +P+++  +    +T ++    E  GL+K DFLGL+ LT
Sbjct: 531  LIRNAGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLT 590

Query: 581  LLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  +++ +   RGV +DL  +P +D  TY LL    TLG+FQL+ S MR  L  MQP  
Sbjct: 591  VIGDAIENIKANRGVDIDLDTLPLEDPATYELLARGDTLGVFQLDGSAMRDLLRRMQPTG 650

Query: 640  IEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQE 693
             EDI+A+++LYRPGP+       Y +RKNG++ +  IHP ++     +L +T G+I+YQE
Sbjct: 651  FEDIVAVLALYRPGPMGMNAHNDYADRKNGRQDVKPIHPELEEPLKEILADTFGLIVYQE 710

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            Q+MQIAQ ++GYSL +AD+LRRAMGKK KE +D+  + F  G   NG S+     +++ +
Sbjct: 711  QIMQIAQKVAGYSLGQADLLRRAMGKKKKEILDEAYDGFAEGMKANGFSQAAITALWDTV 770

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNKSHAA Y ++S+ TA++K +YP E++A  +T   D+ +K   +  D R+  
Sbjct: 771  LPFAGYAFNKSHAAGYGLVSFWTAYLKANYPSEYMAGLLTSVGDDKDKAAVYLSDCRKMG 830

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV 872
            I ++PP VN   VDF      I + L A++ VG      I+ A  +   F    D+ +++
Sbjct: 831  ITVLPPDVNASRVDFASVGEDIRFGLGAVRNVGANVVGSIIAAREEKGSFTDFSDYLNKI 890

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D+   +++V ESL+ AG  D  G+ R  L+    +        +K       ++F  +  
Sbjct: 891  DALACSKKVTESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAMGQFDLFGGDDA 950

Query: 933  TFSDKITL---EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA- 988
              S              +S  +   E+ +LG Y SGHPL+  + +L           +  
Sbjct: 951  DESITSVFNVKVPDEEWDSKHKLALEREMLGLYVSGHPLNGVEHVLAAQSDTSIPVILEG 1010

Query: 989  -TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                G  + +  ++ S  ++  + G         + +   E  FFP
Sbjct: 1011 DIKDGTQVTVGGILASVNRRINKNGLTWASAQLEDLSGGIEVLFFP 1056


>gi|163782295|ref|ZP_02177293.1| DNA polymerase III alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882328|gb|EDP75834.1| DNA polymerase III alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 1167

 Score = 1009 bits (2608), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1068 (37%), Positives = 597/1068 (55%), Gaps = 68/1068 (6%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E    FVHL +H+ YSLL+GA+ + +++ K       A+ ++D  NLF + +F +     
Sbjct: 3    EGVKDFVHLHLHTQYSLLDGAIKIEDLVKKAKEFGYRAVGMSDHGNLFGSFQFYKALKKE 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
            GI+PIIG +             +G            ++L+     G + L +L +  Y  
Sbjct: 63   GIKPIIGMEAYFTTGSRFDRKTKGSEDNITDKYNHHLILIAKNDTGLKNLFKLSTLAY-K 121

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +      RI    L++ G EGLI LT    G        N +Q AE+ +  FK +FG+ L
Sbjct: 122  EGFYYKPRIDYELLEKYG-EGLIALTACLKGVPTYYASINETQKAEEWVKKFKDIFGEDL 180

Query: 183  YVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ LQ +   ++      ++++A  + + L+ATN+S +L+ ED EAH  LMA+     V 
Sbjct: 181  FLELQSNDIDEQAVANRNLIEIAKKYGVELIATNDSHYLNPEDREAHTTLMAIQMKRTVH 240

Query: 242  Q---KDRPRVTPDHYLKNRSEMVSIFSD----LPEALENTVEIARRCSFILQVHA---PI 291
                          +  +  E+   F         AL NT+E+  R +    +      +
Sbjct: 241  DMTKGGFRCANDGLHFASPEEVWRKFEGKFDGWERALLNTLEVMDRTADSFDLFETSGYL 300

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            LP +   +   +    E+ LR+ AV GL+ R+A+G   +    ++Y +RL+FEL+VI RM
Sbjct: 301  LPEYQVPKDTTL----EDHLRDLAVRGLKQRIAKG---QAKDTREYWERLEFELDVINRM 353

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F+GYFLIV DFI WAK N++PVGPGRGS AGS+ AY++ ITD+DP+R  LLFERFLNP+
Sbjct: 354  GFAGYFLIVQDFINWAKNNSVPVGPGRGSAAGSLVAYSIGITDVDPIRHGLLFERFLNPE 413

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD D+DFCQD RD VI YV++KYG E VAQIIT+  ++AK  LRDV RAL +PYS 
Sbjct: 414  RVSMPDIDVDFCQDNRDRVIEYVKDKYGRENVAQIITYNVMKAKQTLRDVARALGLPYST 473

Query: 472  VDRLCKLIPNDP--AHPVSLQAIADDS--------------------RFREARLADPSVD 509
             D+L KLIP        +SL+ +                        +FR+    +  +D
Sbjct: 474  ADQLAKLIPQGDVQGTWLSLEEMYSTPMEVLKERYGAHRGDIEDNVNKFRKLCKENAEID 533

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            +L++I+ +LEGL RH S HAAG+VI  +PLS L+P++ D R     TQF+M  +E  GL+
Sbjct: 534  KLVQIALRLEGLTRHTSLHAAGVVIAPKPLSDLIPLFYD-RDGAVATQFDMTKLEDMGLL 592

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGLKTLT L+   D + +R   +VD   +P DD + + LL    T G+FQLES GM
Sbjct: 593  KMDFLGLKTLTELKGMRDLVKERRGEEVDFLSLPMDDPKVFELLQDGNTTGVFQLESRGM 652

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQ 686
            ++ L+ ++PD  +DI+A+++LYRPGP+ + +V  Y NRK+GKE +    P ++ +LKET 
Sbjct: 653  KELLKRLKPDSFDDIVAVLALYRPGPLKSGLVDRYINRKHGKEPVDYPFPELEEVLKETY 712

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQVM+++++L+G++  EAD LR+A+GKK K+ M++ +E+FI G+ + G  +   
Sbjct: 713  GVIVYQEQVMRMSRVLAGFTPGEADTLRKAIGKKKKDLMEQMREKFIKGSVERGFPEDKI 772

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              ++E + KFA Y FNKSH+ AY  ISY TA+MK HYP EF A  +T E ++  K     
Sbjct: 773  TKLWEDIEKFASYSFNKSHSVAYGYISYWTAYMKAHYPAEFFAVKLTTEKND-NKFINLI 831

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEASADKPFDSL 865
            +DA+    +I+PP VN   V F +   R   + +  IKGVG   A+ I EA  D+ F  +
Sbjct: 832  KDAKIMGFEILPPDVNRSDVGFIIEGEREVRFGIGRIKGVGEEAAKAITEARKDREFRGI 891

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
            +DF SRVD +K+N++VLE L+ AGA D  G  R +LL       + +   +   +    +
Sbjct: 892  QDFVSRVDGRKVNKKVLECLIKAGAFDFTGTKRDELLD------RLSSSGKNMSSLAQNS 945

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            +F   +      I                E+ V+GFY SGHPLD Y+ +L        EE
Sbjct: 946  LFGGTQKKKKLDIN----------DILRMEKEVIGFYISGHPLDKYEKLLAGK-YTPIEE 994

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 +G+ + LA  V + Q KKTR GS +  +   + +   E   FP
Sbjct: 995  LEGIGKGSTLTLAGAVSNLQVKKTRNGSYMAILNLIDKSGMVEVVAFP 1042


>gi|320093964|ref|ZP_08025792.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral
            taxon 178 str. F0338]
 gi|319979098|gb|EFW10613.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral
            taxon 178 str. F0338]
          Length = 1179

 Score = 1009 bits (2608), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1069 (33%), Positives = 555/1069 (51%), Gaps = 52/1069 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL  HS YS+L+GA     +  + A   QPAI +TD   LF A +F     +
Sbjct: 1    MASDP-FVHLHNHSEYSMLDGAAKTQAMAQEAARLGQPAIGLTDHGYLFGAYDFYTNCVS 59

Query: 65   AGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
            AG++PIIG +  +                    +   +   +   + L+  + +G   L 
Sbjct: 60   AGVKPIIGLEAYVTPGTSRFDRHKVTWGEPWQRSDDVSAGGSYNHLTLIAYSTQGMHNLF 119

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L S      Q  +  R     L +   EGLI+ TG  SG +           A      
Sbjct: 120  RLGSYASTDGQFGKWPRADKELLAKFH-EGLIVFTGCPSGAVQTRLRLGQWDEAVAEAAE 178

Query: 174  FKKLF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             + +F  +  YV +  H    +R   SQV+++A     PLVATN+S ++ +ED +  D L
Sbjct: 179  LRDIFGPENFYVEVMDHGIDIERRVHSQVLEIARLMNAPLVATNDSHYVKKEDRKIQDAL 238

Query: 232  MAVAHSTVVSQKDRPRVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFIL---QV 287
            + +     ++  DR +   D Y  ++  EM  ++ +LP A + T+EIA RC       + 
Sbjct: 239  LCINSGARINDPDRFKFDGDGYFIRSSQEMRELWRELPGACDATLEIAERCDVRFTTTKE 298

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
             A  +P F   E +D    + +    +   GL  R   G         D R++  +E +V
Sbjct: 299  GANYMPDFPVPEGED----KTSWFVKEVERGLNDRFPGGI------PDDVREQAQYEEDV 348

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I  M F GYFL VAD+I WAK   I VGPGRGSGAGS+ AYA+ IT+++PL   L+FERF
Sbjct: 349  IISMGFPGYFLTVADYINWAKSQGIRVGPGRGSGAGSMVAYAMKITELNPLEHGLIFERF 408

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPDFD+DF + RRDEVI YV+ KYG +R++Q++T+G+++ K AL+D  R L  
Sbjct: 409  LNPERISMPDFDVDFDERRRDEVIAYVKRKYGEDRISQVVTYGTIKTKQALKDSARILGK 468

Query: 468  PYSQVDRLCKLIPN-DPAHPVSL--------QAIADDSRFREARLADPSVDRLLEISQKL 518
             +   ++L K +P       +S+        +   + + FR+    +P    +++ +  L
Sbjct: 469  DFKMGEQLTKALPPAIMGKDISVAGIFDQGDKRYGEAAEFRKFYEDNPDTHEVVQYALGL 528

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R    HA  +++    L+ ++P+ +  +    +TQF+    E  GL+K DFLGL+ 
Sbjct: 529  EGLTRQWGVHACAVIMSSHTLTDIIPIMKRPQDGAIITQFDYPTCETLGLLKMDFLGLRN 588

Query: 579  LTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  +L+ +A       DL  I FDD +TY LL    TLG+FQL+  GMR  L+ M+P
Sbjct: 589  LTVVSDALENIAINGKEDPDLDHIRFDDAKTYELLGRGDTLGVFQLDGGGMRDLLKLMKP 648

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIY 691
            D  EDI A+ +LYRPGP+  ++   Y  RKNG+++I  IHP +    + +L  T G+I+Y
Sbjct: 649  DNFEDISAVGALYRPGPMGANSHTNYALRKNGRQEITPIHPELAEPLEEILGTTFGLIVY 708

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQIAQ L+GY+L +AD+LR+AMGKK KE +D+Q + F  G   NG S+     +++
Sbjct: 709  QEQVMQIAQKLAGYTLGQADILRKAMGKKKKEVLDQQFKGFRQGMVDNGYSEESIKALWD 768

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            ++  F+ Y FNK+H+AAY ++SY TA++K +YP E++AA +T   DN ++   +  + R 
Sbjct: 769  VVVPFSAYAFNKAHSAAYGLVSYWTAFLKANYPTEYMAALLTSTKDNKDRRALYLAECRH 828

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
             +I ++PP VN    +F      I + L+A++ VG      I+ A  +   F S +DF  
Sbjct: 829  MDITVLPPDVNASMGNFAPDGEAIRFGLSAVQNVGGPVVEAIVGAREEKGRFASFQDFLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-- 928
            +V     N+R ++SL+ AGA D  G++R  LL   D        V++N      ++F   
Sbjct: 889  KVPQVVCNKRTIQSLIRAGAFDSMGHTRRALLARCDEAVDAVIDVKRNEAIGQFDLFGGL 948

Query: 929  -HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-- 985
                G  S  I +      +   +   E+ +LG Y S HPL   +  L +       +  
Sbjct: 949  DDGAGGSSLAIDIPDLPEFDRKQKLAAEREMLGLYVSDHPLRGLEGALARHQDYEIAQVV 1008

Query: 986  -SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             S   +    +++A +V     K T++G+     T  + +   E  FFP
Sbjct: 1009 GSEGAMADRVVKIAGLVSGVTTKVTKQGNAWAIATIEDLSGSVEVLFFP 1057


>gi|296313886|ref|ZP_06863827.1| DNA polymerase III, alpha subunit [Neisseria polysaccharea ATCC
            43768]
 gi|296839514|gb|EFH23452.1| DNA polymerase III, alpha subunit [Neisseria polysaccharea ATCC
            43768]
          Length = 1144

 Score = 1009 bits (2608), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1034 (38%), Positives = 581/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTAAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R           S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPECPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+ L  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       VD+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKSTTGDIVDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLVDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++  +   +       +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQIEIMI 1014


>gi|297243791|ref|ZP_06927721.1| DNA polymerase III, alpha subunit [Gardnerella vaginalis AMD]
 gi|296888212|gb|EFH26954.1| DNA polymerase III, alpha subunit [Gardnerella vaginalis AMD]
          Length = 1188

 Score = 1009 bits (2608), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/1070 (32%), Positives = 549/1070 (51%), Gaps = 59/1070 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  H+ YSLL+GA  + +++ +      PA+AITD  N+  A E    A  AGI+P
Sbjct: 7    NFVHLHNHTHYSLLDGASKIPDLVARAKELGMPAVAITDHGNMHGAYEMWSTAVKAGIKP 66

Query: 70   IIGCQLDIDMQ------DNLKMTNQGKTPFPT-----VPSIVLLVSTAEGYQRLIELVSR 118
            IIG +  +  +        +    + +          +  + L      G   L++  S 
Sbjct: 67   IIGIEAYVTPETARQDKSRVHWGTEDQRADDVSGGGLITHMTLWAENDTGLTNLLKASSV 126

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L  +  +  R+    L    ++G+I  +G  SG I         + A +    F+ +F
Sbjct: 127  ANLEGRVMRYPRMDKDVLSTY-SKGVIASSGCPSGIIQTRLRLGQFKEALRAAGEFQDIF 185

Query: 179  -GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
              D  ++ L  H    +      ++++A     PL+ATN+  ++ EED EA D ++ +  
Sbjct: 186  GRDNFFIELMNHGLSIETRVTKDLLEIAKKLNAPLLATNDLHYVHEEDREAQDAMLCINS 245

Query: 237  STVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP--ILP 293
             + +   DR +     +YLK+  +M  +F + PEA +NT+EIARRC+ +         +P
Sbjct: 246  GSRLDDPDRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGEDGAFMP 305

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            +F   E  D    E +    K   GLE R             +  ++ D+E  VI +M+F
Sbjct: 306  QFDCPEGWD----ETSLFLKKVEEGLERRYNNNI------PMEVLKQADYECGVICQMQF 355

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++  L+FERFLNP+R+
Sbjct: 356  CGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLNPERV 415

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            S+PD D+DF  D R +V+ YV  KYG ++VAQ + +G+++ K AL+D  R +   +S  +
Sbjct: 416  SLPDIDVDFDPDGRAKVLEYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGE 475

Query: 474  RLCK-LIPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRH 524
            ++ K L P      +SL  I D+          FRE    DP   R+ E ++ +EGL R 
Sbjct: 476  KITKVLPPAKNGKDMSLHDIFDEKSKRYAEAREFREMYDTDPDTHRITEEAKGIEGLIRQ 535

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  LT+++ 
Sbjct: 536  TGVHACATIMGSEPITNTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTVIRD 594

Query: 585  SLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +L  +   G    D + IP DD  TY LL+   TLG+FQL+S GMR  L  ++PD   DI
Sbjct: 595  TLRNIENNGKDPIDYTKIPLDDKATYQLLSRGDTLGVFQLDSDGMRALLRTLKPDNFNDI 654

Query: 644  IALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQ 697
             AL++LYRPGP+D      Y  RKNG + I+ IHP     +  +L ET G+I+YQEQV  
Sbjct: 655  SALIALYRPGPMDMDSHTNYAKRKNGLQDIIPIHPEVAEPLKEVLDETYGLIVYQEQVQS 714

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
             A++L+GYSL +ADVLRRAMGKK  E + K++  F  G   +G S+  A  ++++L  F+
Sbjct: 715  AARILAGYSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKAHGYSEEAAQAVWDVLVPFS 774

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +  E  N +K   +  +AR+  IQ++
Sbjct: 775  GYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRMGIQVL 834

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSK 875
             P VN   +++    + + + L AI+ VG      I+         F +  DF  RV   
Sbjct: 835  QPDVNESVLEYSAVGDVVRFGLGAIRNVGDKAVNDIITEREGERGRFVNFMDFVQRVPIS 894

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---- 931
             LNRR++ESL+ AGA D    +R  L Q  D        +++ +     ++FA       
Sbjct: 895  ALNRRLVESLIKAGAFDSIDSNRRALFQICDPAIDSVIALKRKQAEGQFDLFADLDSSSD 954

Query: 932  -----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
                 G    +IT+      +   +   E+ +LG Y S HPL     +L  +      + 
Sbjct: 955  SDDDNGMGDMQITVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLADLREMSIAQL 1014

Query: 987  VATI----RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +        G  + +A +V S  ++ +RKG+    VT  +     +  FF
Sbjct: 1015 IDRARTMSDGQQVTIAGLVTSVDRRVSRKGNAWAIVTVEDMESSIQCMFF 1064


>gi|325133602|gb|EGC56263.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M13399]
 gi|325143829|gb|EGC66145.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M01-240013]
 gi|325206743|gb|ADZ02196.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M04-240196]
          Length = 1144

 Score = 1009 bits (2608), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1034 (37%), Positives = 581/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTAAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   +     
Sbjct: 234  PRDFTPGQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG---- 289

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 290  LSRDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+SL +A+  + + +E        D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLSLEKAMEAEPQIQELIEV-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       +D+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIIDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    + +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L      + S +   E+ 
Sbjct: 888  RAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDLPRWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++     +        +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPTKLDRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQVEIMV 1014


>gi|34558271|ref|NP_908086.1| DNA polymerase III subunit alpha [Wolinella succinogenes DSM 1740]
 gi|34483990|emb|CAE10986.1| DNA POLYMERASE III ALPHA SUBUNIT [Wolinella succinogenes]
          Length = 1178

 Score = 1009 bits (2608), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1059 (35%), Positives = 606/1059 (57%), Gaps = 46/1059 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             + HL +H+ YSLL+GA  + ++  K+      A+++TD  N+F A++F       G++P
Sbjct: 4    PYTHLHLHTEYSLLDGANKIKSLAKKVKQLGMSAVSMTDHGNMFGAIDFYTAMKKEGVKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +   D L     G         + L      GYQ L+ L S  ++        
Sbjct: 64   IIGIEAYLHNSDEL-----GDKSTKQRFHLCLYAKNEVGYQNLMYLSSMSFIEG-FYYYP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTFKKLFG 179
            RI    L+E  +EGL+  +    G +             F     + A++  L ++++FG
Sbjct: 118  RINKKLLRE-HSEGLVCSSACLQGEVQWHLNTNSERNVKFGAKGYERAKEVALEYREIFG 176

Query: 180  DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +  Y+ + RH   D+ + +  +++L+    + ++ATN++ +  +ED EAH+  M +A + 
Sbjct: 177  EDFYLEIMRHGIGDQLFIDEPLLRLSLETGIKIIATNDTHYQLQEDAEAHEAFMCIAMNK 236

Query: 239  VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-- 295
              +  +R R +  + YLK+  +M  +F+D+PEAL NT EI  +C+  L +  P  P F  
Sbjct: 237  NFNDPNRLRHSVQEFYLKSPEQMEELFADIPEALLNTQEIVEKCNLELHLGNPTPPTFKF 296

Query: 296  ---IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
                 K        +++    K   GL+ RL      +    ++  +R    +N   +MK
Sbjct: 297  TEDYAKAEGLDFHTDDDYFAYKCREGLKKRLKLVPETRHEEYRERLEREIEIIN---KMK 353

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GY LIV DF++ AK   IPVGPGRGS AGS+ A+ L ITDIDPL+++LLFERFLNP+R
Sbjct: 354  FPGYMLIVWDFVRAAKDRGIPVGPGRGSAAGSLVAFCLEITDIDPLKYALLFERFLNPER 413

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD D+DFCQ RR E++ YV NKYG   VAQ+ITFG+LQAK  +RDV R + MPY + 
Sbjct: 414  VSMPDIDMDFCQSRRGEILDYVVNKYGRYNVAQVITFGTLQAKGVIRDVARVMGMPYGEA 473

Query: 473  DRLCKLIPNDPAHPVSLQ-----------AIADDSRFREARLADPSVDRLLEISQKLEGL 521
            D + KLIP++    ++ +           A   + + +E   ++    ++ E +  LEGL
Sbjct: 474  DAMAKLIPDELGITLNGKGKEGTPDYKAGAFQKEPKIKELIDSNKEARKVWEFALLLEGL 533

Query: 522  YRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
             R+A THAA +VI   + L    P+Y+    +   TQ++MK++E   LIKFDFLGLKTLT
Sbjct: 534  KRNAGTHAAAVVIDSQKELWHKAPLYKPSGDETIATQYSMKYLEDVDLIKFDFLGLKTLT 593

Query: 581  LLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            +++ ++D +  R   ++D + +  +D   Y  + +  T+G+FQ+ES GM+   + ++P  
Sbjct: 594  VIRGAMDMIKVRYSKEIDFNALDVNDPAVYETIQSGNTIGLFQVESKGMQDLNKRLKPTT 653

Query: 640  IEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             EDIIA+++LYRPGP+++ +   + +RK+GK  I+   P ++P+LK T GVI+YQEQVMQ
Sbjct: 654  FEDIIAVLALYRPGPMESGMLDDFIDRKHGKAPILYAFPELEPILKPTYGVIVYQEQVMQ 713

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            I Q + G+SL  AD++RRAMGKKIKEEMD+ K  F +GA K G  +  +  +F+L+ KFA
Sbjct: 714  IVQTIGGFSLGGADLVRRAMGKKIKEEMDRLKGEFANGAEKRGFDRQKSEELFDLIVKFA 773

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             YGFNKSH+AAYA++++QT ++KT+YP EF+A+ +T E DN +K+ K+  +A++  I+++
Sbjct: 774  GYGFNKSHSAAYAMVTFQTTYLKTYYPHEFMASLLTSEQDNTDKVVKYVDEAKRLGIKVL 833

Query: 818  PPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
            PP ++   ++F V    G+  I + L AIKG G      I+E  A  PF++LEDF  R+D
Sbjct: 834  PPDISRSLLEFSVAEIEGEKVILFGLGAIKGAGEIALSKILEERAKAPFENLEDFLGRID 893

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            ++K+N++ LESL+ +G++  FGYSR  LL+ ++ I + ++  E+ +     ++F   +  
Sbjct: 894  AQKVNKKALESLIKSGSMVGFGYSRRALLEQIEAINEASKESERAKRMAENSLFGDSEEM 953

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
               ++ +E F         E E+  LGFY SGHPLD ++P L ++      +      G+
Sbjct: 954  IVARVEIENFEEYPLKRLLELEKETLGFYVSGHPLDDFRPELAEVNYTLSSQMEQIEDGS 1013

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   V     K ++KG+R G +   +     E   F
Sbjct: 1014 AALFIGKVEEVTTKFSKKGNRFGILNILDLHGNIEMMVF 1052


>gi|160898940|ref|YP_001564522.1| DNA polymerase III subunit alpha [Delftia acidovorans SPH-1]
 gi|160364524|gb|ABX36137.1| DNA polymerase III, alpha subunit [Delftia acidovorans SPH-1]
          Length = 1194

 Score = 1008 bits (2607), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1058 (39%), Positives = 593/1058 (56%), Gaps = 58/1058 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   +N I+   A D Q A+A+TD NNLF  ++F ++  A G++P+
Sbjct: 19   FVHLRLHTEFSVVDGTNRINAIVKAAAEDGQVALAVTDFNNLFGGVKFYREGRAKGVKPV 78

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ I+ ++              V  I++LV +  GY  L EL++R +  +  K    
Sbjct: 79   LGAEIQIEGENG-----------AAVSRIIVLVQSPLGYHNLSELLARGWTRNVVKGQAV 127

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
               +WLQE+G EGLI+L G  +GP+ +A        A         +F  R ++ LQR  
Sbjct: 128  HTWAWLQELG-EGLIVLAGAQAGPVGQALMRGDEAGAAAVAQRLASMFPHRFFIELQRAG 186

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D       VQLA    LP+VAT+   F   +DYEAH+  + +A   +++   R  R 
Sbjct: 187  RPDDEAHVLAAVQLADRLNLPVVATHPIQFFGPDDYEAHEARVCIAEGEILANPKRVRRF 246

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T D + K  ++M ++F+D+P A+ NTVEIARRCS  L +  P LP F   +   +    +
Sbjct: 247  TRDQHFKTAAQMQALFADIPSAIANTVEIARRCSLTLVLGKPQLPNFPVPDGMTM----D 302

Query: 309  NELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R+++  GLE RL         +      Y +RL+FE+  I +M F GYFLIV DFI+
Sbjct: 303  EFFRSESFNGLEDRLTHLYPDPAKREAQRPRYVERLEFEIGTILKMGFPGYFLIVGDFIK 362

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AY L ITD+DPL ++LLFERFLNP+R+SMPDFD+DFCQ 
Sbjct: 363  WAKLNGCPVGPGRGSGAGSLVAYVLKITDLDPLEYNLLFERFLNPERVSMPDFDVDFCQA 422

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV+  YG + V+QI TFG++ A+AA+RDVGR L M Y+  D + KLIPN P  
Sbjct: 423  NRDRVIDYVKQLYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGL 482

Query: 486  PVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             V+L+              AI  +    E    +  V  L+E++QKLEG+ R+   HA G
Sbjct: 483  HVTLKYPPNPKKEGDKYTYAIEAEPMLAERIEKEEDVKTLIEMAQKLEGMTRNIGMHAGG 542

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI    L+   P+Y+   SD  V  ++   +E  GL+KFDFLGL TLT+L+ + +F+ +
Sbjct: 543  VVIAPGKLADFCPLYQQPGSDSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIIK 602

Query: 592  RGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R    +      IP DD  TY L +   T  +FQ ES GM+  L   +P  +ED+IAL +
Sbjct: 603  RHKGQENFAFENIPLDDARTYQLFSEGKTEAVFQFESRGMQGMLRDAKPSRLEDLIALNA 662

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK+GKE +   HPL++ +L ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 663  LYRPGPMDLIPSFVARKHGKEVVEYPHPLVEQVLAETYGIMVYQEQVMQTAQVLGGYSLG 722

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM   +  F  GA+K GIS+  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 723  GADLLRRAMGKKKVEEMVMHRGIFREGAAKQGISEEKADEVFDLMEKFAGYGFNKSHAAA 782

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y++++Y TAW+K HY  EF   +MT+EMDN +K+K   +DA +  I   PP VN     F
Sbjct: 783  YSLLAYHTAWLKVHYTAEFYCGNMTVEMDNTDKLKVLYEDALKMGISFEPPDVNRGMYRF 842

Query: 829  KVGDNR-IYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKKL 877
            +   ++ I Y L AIKG G      I+ A              PF SL DFC RVD  +L
Sbjct: 843  EPVTDKVIRYGLGAIKGTGQQAIEAIVAAREGRGVGPRGADKGPFKSLADFCVRVDRTRL 902

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGT 933
            N+R LE+L+  GA D    +R  L+ S+D+  ++      N       +F        G+
Sbjct: 903  NKRTLEALIKGGAFDAIELNRASLVASIDHAFEFGNKTLANAN--QGGLFDMMGDDAVGS 960

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
             + +  L +        R   E+  +GFY SGH  D  +  +R+       E   +    
Sbjct: 961  STQEPPLVEALPWGVKERLTQEKTAVGFYLSGHLFDEVEKEVRRFVRTPLAELRDSREPQ 1020

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
               LA ++   +    ++G R+G     + +   EA+ 
Sbjct: 1021 --TLAGIISDFRAINGQRG-RLGLFKIDDGSGVIEASV 1055


>gi|237736354|ref|ZP_04566835.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817]
 gi|229421396|gb|EEO36443.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817]
          Length = 1138

 Score = 1008 bits (2607), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1034 (37%), Positives = 608/1034 (58%), Gaps = 32/1034 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSLL+G   +++ L +       AIAITD  NLF ALEF +KA   GI+P
Sbjct: 4    NFVHLHLHTEYSLLDGVGKIDDYLGRAKELGMQAIAITDHGNLFGALEFYKKARKKGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +  +       +          ++LL    EGY+ L+++ S  ++        
Sbjct: 64   IIGMEAYVCERGMEDKEGRN-------FHLILLARDNEGYRNLLKISSESFIRG-FYYKP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF-NSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
            R+  ++L+E  +EGLI L+    G I R      S       +  +  +F  +  ++ +Q
Sbjct: 116  RVDKNFLKE-HSEGLIALSACMQGEISRRILDMESEDKISSAIDEYVDIFGKENFFIEVQ 174

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   +++    ++ ++A  + L LVATN++ +++E ++   D+L+ V     +S + R 
Sbjct: 175  ANGIKEQFELNEKLYEIAKQNNLKLVATNDTHYVNEGEHTLQDILICVQTGAKLSDEKRM 234

Query: 247  RVTPDH-YLKNRSE-MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R+  +  +LK+R + +  +     EA++NT+ IA RC+  ++      P +    C    
Sbjct: 235  RIETEELFLKSREQVLGQLGEKYLEAVDNTIIIAERCNVDIEFGHFKFPDYKIPTC---V 291

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K  E  LR     GL  R   G        +   +R+++EL +I +M ++GYF++V DFI
Sbjct: 292  KTIEAFLRKLVYLGLSKRYPHGL------TKSIVERVEYELGIIEKMGYAGYFVVVWDFI 345

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A++ NIP+GPGRGS AGS+ AYAL IT +DPL+++L+FERFLNP+R+SMPD DID CQ
Sbjct: 346  DFARRKNIPIGPGRGSAAGSLIAYALGITQLDPLKYNLIFERFLNPERISMPDIDIDICQ 405

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YV  KYG ++VAQIITFG+++A+AA+RDVGR L  P S++D + KL+P +  
Sbjct: 406  ERRQEVIDYVIEKYGADKVAQIITFGTMKARAAIRDVGRVLNTPLSKIDAVAKLVPFNAT 465

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               +L+ + +   FR+  L D  + ++++IS K+E   RHAS HAAGIVI   PL+  VP
Sbjct: 466  IKQTLEGVEE---FRKQYLEDREIQKVIDISAKIENKVRHASVHAAGIVITKDPLTDTVP 522

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603
            +Y D ++ +  TQ+ MK +E  GL+K DFLGL+ LT LQ+++D++ +  G ++ L  IP 
Sbjct: 523  LYCDTKNKVVSTQYQMKELEDLGLLKMDFLGLRNLTNLQRTIDYIKEDLGEEIRLEDIPL 582

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            +  + Y LL+   T G+FQ+ES G+R+ L  ++PD  EDIIAL++LYRPGP+ + +V  +
Sbjct: 583  NSKKVYELLSRGDTSGVFQMESVGIRKILVKLKPDKFEDIIALLALYRPGPLGSGMVDDF 642

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             N KNG  +I   HP ++  LKET GVI+YQEQVM+IA +++GYSL EAD+LRRAMGKK 
Sbjct: 643  INGKNGITEIKYPHPSLEQTLKETYGVILYQEQVMKIANIMAGYSLGEADLLRRAMGKKN 702

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             + M++ +E+FI+ + +NG S+  A+ +FEL+ KFA YGFNKSH+AAYA+I+Y TA+ K 
Sbjct: 703  VQIMEENREKFITRSIENGYSEEKALEMFELIDKFAGYGFNKSHSAAYALIAYWTAYFKA 762

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HY   + AA MT EM ++E I  +  DA+  N+++  P VN     F V  + I +SLAA
Sbjct: 763  HYMKHYYAALMTSEMAHIEDIAYYVDDAKVHNLKLHLPDVNRATSKFIVDKDGIVFSLAA 822

Query: 842  IKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK VG   +  I+E  + +  + +LEDF  R     LN++ LESL+ AGALD    +R Q
Sbjct: 823  IKNVGEGVSEKILEEYNENGEYKNLEDFVVRTKKYGLNKKALESLILAGALDGLPGNRRQ 882

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
              +S+D I  YA    K    +  N+F   K +     TL + +  +       E+  LG
Sbjct: 883  KFESVDKIIDYANRKLKEDDIQQMNLFGEAKSSLGV-FTLPQVTEYSLDELLSKEKEYLG 941

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVT 1019
            FYFS HPLD Y+ +++   +    E         ++   ++   ++  T+  G  +G   
Sbjct: 942  FYFSAHPLDSYRRLIKVFRLSPINEIKEEKTTQILKTCGILRDVKKIVTKNSGQIMGVFE 1001

Query: 1020 FSEPAKEYEANFFP 1033
              +   +     FP
Sbjct: 1002 LEDYYDKISCVLFP 1015


>gi|241759501|ref|ZP_04757605.1| DNA polymerase III, alpha subunit [Neisseria flavescens SK114]
 gi|241320283|gb|EER56616.1| DNA polymerase III, alpha subunit [Neisseria flavescens SK114]
          Length = 1144

 Score = 1008 bits (2607), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1034 (38%), Positives = 580/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAVDVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F +  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPNAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDYLVKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+ L  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       VD+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIVDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VQLIDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQIEIMV 1014


>gi|218767589|ref|YP_002342101.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis
            Z2491]
 gi|14194676|sp|Q9JVX8|DPO3A_NEIMA RecName: Full=DNA polymerase III subunit alpha
 gi|121051597|emb|CAM07897.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis
            Z2491]
          Length = 1144

 Score = 1008 bits (2607), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1034 (38%), Positives = 583/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   D                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVRIGNPDAPDK----------PFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M   FSDLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PRDFTPSQFFIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDYLVKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++  D+L KLIP 
Sbjct: 410  FCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPL 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+ L  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       VD+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIVDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  TIPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    + +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESITSARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++  +   +       +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQVEIMV 1014


>gi|300703510|ref|YP_003745112.1| DNA polymerase III subunit alpha [Ralstonia solanacearum CFBP2957]
 gi|299071173|emb|CBJ42487.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum CFBP2957]
          Length = 1176

 Score = 1008 bits (2607), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1064 (38%), Positives = 604/1064 (56%), Gaps = 55/1064 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL++HS YS+++G + L+  +   AAD   A+A+TD  N F  + F ++A   G
Sbjct: 2    NPPRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P++G  + I   D                 ++LLV   +GY  L  L++R +L +Q +
Sbjct: 62   VKPVVGADVWITNHDE----------RDKPSRLLLLVRNKQGYLNLCTLLARAWLSNQHR 111

Query: 127  QSVRICLSWLQEIG------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                I   W  E G        GL+ L+G   G +  A    +  +A K    + ++F  
Sbjct: 112  GRAEIAPEWFDEPGVEDAPLATGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQ 171

Query: 181  RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR           Q V+LA + +LP+VAT+   F++++D+ AH+  + +A   +
Sbjct: 172  AFYIELQRAGQAGTEAYIQQAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDL 231

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R + + Y K + EM ++F+D+P AL NTV+IA+RC+  L++  P LP F   
Sbjct: 232  LANPRRTRRFSTEQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTP 291

Query: 299  ECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L + A  GLE R   L   A  +     +Y  RL+FE   I +M F G
Sbjct: 292  DGMSL----DDYLVHLAKDGLEKRMEVLFPDAAVREAKRPEYYARLEFETGTIIKMGFPG 347

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 348  YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD +
Sbjct: 408  PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467

Query: 476  CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP  P   V+L+ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 468  AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527

Query: 535  GDRPLSQLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
                L+   P+Y     D   V+Q++   +E  GL+KFDFLGL TLT+L  +  ++    
Sbjct: 528  APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587

Query: 594  V---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  + S IP  D   + +L    T+ +FQLES GM+  L+  +PD  EDIIALV+LY
Sbjct: 588  PSKADWNCSHIPLTDKPAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  A
Sbjct: 648  RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM + +E F  GA+K+G+S   A  IF+L+ KFA YGFNKSHAAAYA
Sbjct: 708  DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVDFK 829
            +++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DA     ++++PP +N     F 
Sbjct: 768  LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFT 827

Query: 830  -VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV A
Sbjct: 828  PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVE 946
            GA D    +R QLL S+          +K       ++F    G  +++    L   +  
Sbjct: 888  GAFDSLNDNRAQLLVSIG--LAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDEAPW 945

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA----------------TI 990
             +  + + E++ LGFY SGH  D  +  +R+       +                   + 
Sbjct: 946  TTKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGNGGGYGSR 1005

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032
               N  ++ ++V  + + T++G  +  V   + ++    E   F
Sbjct: 1006 DARNKTVSGVIVGLRTQMTQRGK-MIVVMLDDGSQSEATEVTVF 1048


>gi|121634255|ref|YP_974500.1| DNA polymerase III, alpha subunit [Neisseria meningitidis FAM18]
 gi|120865961|emb|CAM09698.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis
            FAM18]
 gi|325197670|gb|ADY93126.1| DNA polymerase III, alpha subunit [Neisseria meningitidis G2136]
          Length = 1144

 Score = 1008 bits (2607), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1034 (38%), Positives = 582/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            P+    + I   D                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PVGAADVWIGNPDAPDK----------PFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDYLIKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+ L  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       +D+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIIDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++  +   +       +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQVEIMV 1014


>gi|325916626|ref|ZP_08178889.1| DNA polymerase III, alpha subunit [Xanthomonas vesicatoria ATCC
            35937]
 gi|325537180|gb|EGD08913.1| DNA polymerase III, alpha subunit [Xanthomonas vesicatoria ATCC
            35937]
          Length = 1195

 Score = 1008 bits (2606), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1081 (38%), Positives = 604/1081 (55%), Gaps = 78/1081 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHAN-LFAL-AGRDSLAGRLFSEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   YLK+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTQALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E + +    ++ +R+++  GL  RL +  IA G   +DY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPEDETL----DSWIRSQSREGLAARLEKSPIAPGKTRKDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLY 522
              VD + KLIPN     +   A+ +            +    +  V  L++++++LE L 
Sbjct: 464  GLVDSVAKLIPNILGITLK-DAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523  RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+T
Sbjct: 523  RNAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582

Query: 579  LTLLQKSLDFLAQRGV-----KVDLSLIPFDDHETYHL-LTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  +  R        VD++ IP DD  TY     +  T  +FQ ESSGMR+ L
Sbjct: 583  LTIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQ
Sbjct: 643  KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQ 702

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703  EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             + + PP VN     F+        Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 823  GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883  RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 931  KGTFSDK-ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------ 983
              +     + L +            E+  LGFY SGHP D ++  +R++           
Sbjct: 943  DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKI 1002

Query: 984  ------------EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                         E  A     +  LA  V+  ++    KG    +V   +     E + 
Sbjct: 1003 LASQQRGGGGGDGEKRAWRPEVSAILAGQVIGVRR----KGDSQVFVQLEDGRGRVECSA 1058

Query: 1032 F 1032
            F
Sbjct: 1059 F 1059


>gi|297538821|ref|YP_003674590.1| DNA polymerase III subunit alpha [Methylotenera sp. 301]
 gi|297258168|gb|ADI30013.1| DNA polymerase III, alpha subunit [Methylotenera sp. 301]
          Length = 1169

 Score = 1008 bits (2606), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1055 (39%), Positives = 615/1055 (58%), Gaps = 47/1055 (4%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            +Q   K P FVHL+ HS YS+++G + +++ + +   D+ PA+A+TD +NLF A++F + 
Sbjct: 5    SQSDIKQPIFVHLRCHSEYSIVDGIVRIDDYVKQALNDKMPALALTDLSNLFGAIKFYKT 64

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   GI+PI+GC + ++   N                ++LL  +  GY  L +L+SR YL
Sbjct: 65   ARGKGIKPILGCDIWLENTAN----------RDQPTRLLLLCQSHAGYLLLCQLLSRAYL 114

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             +Q +        W  E GTEGLIML+G  +G + +A   ++  +A K   +++ LF DR
Sbjct: 115  SNQYRGRAEFKREWFVECGTEGLIMLSGAIAGDVGQACTQDNLALATKLAQSWENLFPDR 174

Query: 182  LYVNLQRHRG--------------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
             Y+ +QR                        QV  +A++  LP+VAT+   F++ +D+ A
Sbjct: 175  FYLEVQRTASVAESSTPESNALQHQQENYIQQVRSIAHSLNLPIVATHPIQFITPDDFRA 234

Query: 228  HDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            H+    ++   V++   RP   T + Y K +++M ++F D+PEAL N+VEIA+RC+ +L 
Sbjct: 235  HEARTCISEGYVLADTRRPKNFTTEQYFKPQADMATLFEDIPEALTNSVEIAKRCNLMLT 294

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDF 343
            +    LP F     + +       L  +A  GL  RL         +      Y  RLDF
Sbjct: 295  LGKNYLPNFPTPNNESLN----EYLIAEARRGLLQRLEVLYPNEEVRAAKKPAYDARLDF 350

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            E  VI +M F+GYFLIVADFIQWAK N +PVGPGRGSGAGSV AY+L ITD+DPL ++LL
Sbjct: 351  ETKVINQMGFAGYFLIVADFIQWAKGNGVPVGPGRGSGAGSVVAYSLKITDLDPLEYNLL 410

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNPDR+SMPDFDIDFCQ+ RD VI YV+ KYG + V+QI TFG++ AKA +RDVGR
Sbjct: 411  FERFLNPDRVSMPDFDIDFCQEGRDRVIDYVKQKYGLDAVSQIATFGTMAAKAVIRDVGR 470

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             L +P+  VD + KLIP +    +S  A+  + +  E R  +  +  LLE++ +LEGL R
Sbjct: 471  VLDLPFYFVDGISKLIPLELGITLS-DALVKEPQLAERRENEEELKELLELALRLEGLVR 529

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
            +   HA G++I    +S   P+Y        V+Q++   +E  GL+KFDFLGL+TLT+L+
Sbjct: 530  NIGMHAGGVLISPGKISDFSPVYCQADGASLVSQYDKDDVEAVGLVKFDFLGLRTLTILE 589

Query: 584  KSLDFLAQRGVKVDL-----SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
             +L    ++     L       +P +D  T+ LL T  T  +FQLES GM+  L+   PD
Sbjct: 590  LALANANKQRATEGLAPLSFETLPLNDKPTFQLLKTANTTAVFQLESKGMKDMLKQALPD 649

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            C EDIIALV+LYRPGP+D I  +  RK+GK+++   HPL +P+LKET G+ +YQEQVMQI
Sbjct: 650  CFEDIIALVALYRPGPMDLIPDFCRRKHGKQRVEYPHPLTEPILKETYGIAVYQEQVMQI 709

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKK  EEMD Q++ F+ GA+KN +++  A+ +F+LL KFA 
Sbjct: 710  AQVVAGYSLGGADLLRRAMGKKKVEEMDAQRKTFVEGATKNNMTERQAMELFDLLEKFAG 769

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGFNKSHAAAYA+++YQTA++K HYP  FLA++M+ +M+N + ++ F +D     ++I+ 
Sbjct: 770  YGFNKSHAAAYALVAYQTAYLKAHYPAAFLASTMSADMNNTDSVRIFYEDCAPNQVKILS 829

Query: 819  PSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKK 876
            P VN     F  +  N++ Y L A+KG G      I++A   D PF  L DFC+R+D +K
Sbjct: 830  PDVNQSEYKFTPISKNQVLYGLGAVKGTGQAAIEVILQARRKDGPFKDLFDFCNRLDLRK 889

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            +NRRV+ESL+ AGA D    SR  LL  +      A+    N  +   ++F       ++
Sbjct: 890  VNRRVVESLIRAGAFDKLSPSRNALLAGVAMAMAAAEQNSAN--SNQNSLFGEVADKAAN 947

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
               L          R + E+  LGFYFSGHP   ++  L +             +     
Sbjct: 948  --ILPMVPDWTEQQRLQEEKAALGFYFSGHPYWAFQKDLSQFISTTLANLA--PKEQPQL 1003

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            LA +V   + + T +G  I  V   +     E   
Sbjct: 1004 LAGIVSGVRIRMTGRGK-IAIVGLDDGTTRLEVVV 1037


>gi|325201527|gb|ADY96981.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M01-240149]
 gi|325207506|gb|ADZ02958.1| DNA polymerase III, alpha subunit [Neisseria meningitidis NZ-05/33]
          Length = 1144

 Score = 1008 bits (2606), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1034 (37%), Positives = 583/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTAAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   +     
Sbjct: 234  PRDFTPGQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG---- 289

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 290  LSRDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+ L  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       +D+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIIDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    + +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++  +   +       +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQVEIMV 1014


>gi|241663600|ref|YP_002981960.1| DNA polymerase III subunit alpha [Ralstonia pickettii 12D]
 gi|240865627|gb|ACS63288.1| DNA polymerase III, alpha subunit [Ralstonia pickettii 12D]
          Length = 1172

 Score = 1007 bits (2605), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1061 (39%), Positives = 609/1061 (57%), Gaps = 53/1061 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SP FVHL++HS YS+++G + L++ +   A D   A+A+TD  N F  + F ++A   G
Sbjct: 2    NSPRFVHLRLHSEYSVVDGNVRLDDAVKAAAKDGMGALALTDLANAFGLVRFYKEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI+G  + I   D                 ++LLV   +GY  L +L++R +L +Q +
Sbjct: 62   VKPIVGADVWITNHDE----------RDKPTRLLLLVRDKQGYLNLCQLLARAWLSNQHR 111

Query: 127  QSVRICLSWLQEIG------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                I   W  E G        GL+ L+G  +G I  A    +  +A K    + ++F  
Sbjct: 112  GRAEIAPEWFDEPGVENAPLAAGLLALSGAMAGDIGVALANGNEALARKLATHWSRVFPG 171

Query: 181  RLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
              Y+ LQR  H G + Y   Q V+LA   +LP+VAT+   F++ +D+ AH+    +A   
Sbjct: 172  AFYIELQRAGHAGTEAYI-QQAVKLASAMQLPVVATHPVQFMTPDDFTAHEARTCIAEGE 230

Query: 239  VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            +++   R R  T + Y K + EM ++F+D+P AL N V+IA+RC+  L++  P LPRF  
Sbjct: 231  LLANPRRARRFTTEQYFKTQDEMCALFADIPSALANAVQIAQRCNLKLELGKPKLPRFPT 290

Query: 298  KECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
             +   +    ++ L   A  GLE R   L      +     +Y  RL+FE   I +M F 
Sbjct: 291  PDGMSL----DDYLVQLAKEGLEKRMEVLFPDEAVRESKRAEYYARLEFETGTIIKMGFP 346

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+S
Sbjct: 347  GYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVS 406

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFDIDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD 
Sbjct: 407  MPDFDIDFCQHGRDRVIQYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDG 466

Query: 475  LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            + KLIP  P   V+L+ A  ++    E    +  V +LLE++Q++EG+ R+   HA G++
Sbjct: 467  VAKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVL 526

Query: 534  IGDRPLSQLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            I    L+   P+Y     D   V+Q++   +E  GL+KFDFLGL TLT+L  +  ++   
Sbjct: 527  IAPGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRML 586

Query: 593  GV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                   + S IP  D + + +L T  T+ +FQLES GM+  L+  +PD  EDIIALV+L
Sbjct: 587  DPSKADWNCSHIPLTDKKAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVAL 646

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  
Sbjct: 647  YRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGG 706

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM + +  F +GA+K+G+S   A  IF+L+ KFA YGFNKSHAAAY
Sbjct: 707  ADLLRRAMGKKKAEEMAEHRALFRAGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAY 766

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVDF 828
            A+++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DAR    + I+PP +N     F
Sbjct: 767  ALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNGLTILPPDINASQYRF 826

Query: 829  -KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   I Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV 
Sbjct: 827  APTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVR 886

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSV 945
            AGA D    +R QLL S+          +K       ++F    G  +++    L     
Sbjct: 887  AGAFDSLNDNRAQLLASIG--LAMEAAEQKAAAANQVSLFDLMSGDDAEQHRPELVDEPA 944

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA------------TIRGN 993
             ++  + + E++ LGFY SGH  D Y+  +R+       +                    
Sbjct: 945  WSTKRKLQEEKQALGFYLSGHLFDEYRDEVRRFARTTLADLAREVTDKGNGGGYGNRDAR 1004

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032
            N  +A ++V ++ + T++G  +  V   + +     E   F
Sbjct: 1005 NKTVAGVIVGQRTQMTQRGK-MLIVMLDDGSASEATEVTVF 1044


>gi|325849029|ref|ZP_08170521.1| DNA polymerase III, alpha subunit [Anaerococcus hydrogenalis
            ACS-025-V-Sch4]
 gi|325480274|gb|EGC83337.1| DNA polymerase III, alpha subunit [Anaerococcus hydrogenalis
            ACS-025-V-Sch4]
          Length = 1149

 Score = 1007 bits (2605), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1052 (33%), Positives = 569/1052 (54%), Gaps = 47/1052 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL +H+ YSLL+G   ++ +++K+   +  + AITD  N++  +EF +K    GI+P
Sbjct: 4    NFTHLHLHTEYSLLDGFTKIDKLMEKLKEYKMNSCAITDHGNMYGVIEFYKKCQDNGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +   D+     Q K        ++LL     GYQ LI++VS+ Y         
Sbjct: 64   IIGCEVYVSDNDHKIKNPQNKR----YYHLILLAKNNRGYQNLIKIVSKAYTEG-FYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI    L+E   + +I L+   +G I++    N  + A +    +  LF  +  Y+ +Q 
Sbjct: 119  RIDFEVLEEY-KDDIIALSACLNGEINQRILENDIEKAYQTAQKYLDLFGRENFYLEIQN 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++      ++++    ++ +V TN+  ++ + D    DVL  +   +++  + R +
Sbjct: 178  HGLKEQKIVNQNLLKIHEDLKIEMVCTNDVHYVEKNDAFYQDVLSCIQTGSLLEDEKRMK 237

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +  D  YLK++  M  IF D P A EN+ +IA  C+  L+ H P LP F +   +     
Sbjct: 238  MPCDEFYLKDQQMMKEIFKDFPRAYENSQKIADMCNVKLEFHNPHLPYFTKVPEN---MT 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L+     GL  +        G   +  ++R + E++VI  M +  YFLIV DF+++
Sbjct: 295  NLDYLKYLVNKGLAKKY-------GKVDEKIQKRAEKEISVINNMGYVDYFLIVWDFVRY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N I VGPGRGS AGS+ +YAL IT IDP++++LLFERFLNP+R+SMPD DIDFC + 
Sbjct: 348  AKDNKIAVGPGRGSAAGSIISYALDITQIDPIKYNLLFERFLNPERVSMPDIDIDFCYEN 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD V+ YV + YG + V+QI+TFG ++A+ A+RDVGR + + + +VD++ KLIP      
Sbjct: 408  RDRVVDYVYDLYGKDHVSQIVTFGRMKARNAIRDVGRVMDISFKKVDKIAKLIPQAIGMT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ +  +       D    R+++ ++ +E L RH S HAAG+VI    L+ +VP+ 
Sbjct: 468  ID-KALENTEKLAYEYENDVETKRMIDTARNIENLPRHTSIHAAGVVISKEILTDIVPL- 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
              + +D  VTQFNM  IE+ GL+K DFLGL+ LT++Q ++  + + + + ++L  I  +D
Sbjct: 526  -ALSNDQIVTQFNMTEIEELGLLKMDFLGLRNLTVIQDTIKDVKKYKNIDINLDNIDEND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +         T+GIFQ ES+GMR  L+ ++P   +D++A  SL+RPGP+D I  Y   K
Sbjct: 585  PKVLDQFRKAETIGIFQFESAGMRNFLKNLKPTRFDDLVAANSLFRPGPMDQIPNYIKNK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
               + I  I   + P+L+ T G+I+YQEQVMQI Q L+G+SL EAD LRRAM KK    M
Sbjct: 645  MYPQNISYIDQSLKPILEVTYGIIVYQEQVMQIVQQLAGFSLGEADNLRRAMSKKKMSVM 704

Query: 726  DKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            +  +E F+             G   NGIS+  A  I++ +  FA Y FNKSH+AAY++++
Sbjct: 705  EANREIFVHGKKDEKGNYEVLGCVNNGISEQNANKIYDEMISFAKYAFNKSHSAAYSLVA 764

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
             QTA++K ++  E++A  +T  M +  K+  +  +A++  I+I+PP +N     F    N
Sbjct: 765  IQTAYLKCYFKEEYMANLLTSIMGDSSKVYLYISEAKRLGIEIVPPDINKSERRFIAEKN 824

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890
            +I + ++AIK VG      I++   +K + + +DF  R+   D   LN++ LESL+ +GA
Sbjct: 825  KIIFGMSAIKNVGDNLIDLIVKIRDEKIYKTFKDFLERIESNDPTALNKKALESLIKSGA 884

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKFSVENS 948
             D  GY R +L+   +   +     EK       N+  F  +     D I     +   +
Sbjct: 885  FDSLGYKRSELIAVHETALQSIHDNEKVNLKGQMNLLDFDQKDQNEEDDIKFPPVNEYKN 944

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-------RGNNIRLAAMV 1001
              +   E+ VLGFY S HPL+     ++K      E                 + +A ++
Sbjct: 945  KQKLSLEKEVLGFYISDHPLNSLGDRVKKYTNFSTEILSELRPIDLDKYDNKEVVMAGVI 1004

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +K +  T+K + + + T  +     E   FP
Sbjct: 1005 TNKSETMTKKNTLMAFSTLEDMYGSIEMIIFP 1036


>gi|308389929|gb|ADO32249.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis
            alpha710]
          Length = 1144

 Score = 1007 bits (2605), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1034 (38%), Positives = 583/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +     
Sbjct: 234  PRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG---- 289

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 290  LSRDDYLIKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+SL  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + D +       +D+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKNTTGDIIDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    + +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++  +   +       +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQVEIMV 1014


>gi|325204784|gb|ADZ00238.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M01-240355]
          Length = 1144

 Score = 1007 bits (2605), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1034 (38%), Positives = 581/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTAAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   +     
Sbjct: 234  PRDFTPGQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG---- 289

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 290  LSRDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+SL  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       +D+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIIDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    + +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMNNAD--QKAANTNQGGLFDMMEDAIEP-VRLIDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQVEIMV 1014


>gi|288916170|ref|ZP_06410550.1| DNA polymerase III, alpha subunit [Frankia sp. EUN1f]
 gi|288352361|gb|EFC86558.1| DNA polymerase III, alpha subunit [Frankia sp. EUN1f]
          Length = 1178

 Score = 1007 bits (2605), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1065 (33%), Positives = 563/1065 (52%), Gaps = 52/1065 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA  L ++  +++    PA+AITD   ++ A +F ++A AAG++P
Sbjct: 4    SFVHLHVHTEYSMLDGAARLKDMFSEVSRQGMPAVAITDHGYMYGAYDFYRQATAAGVKP 63

Query: 70   IIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIGC+  +  +  L                 +   +   + +      G   L  L SR 
Sbjct: 64   IIGCEAYVAPESRLLKQRVRWGDPNQKSDDVSGGGSYTHMTMWARNETGLHNLFRLNSRA 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF- 178
             +     +  R+    + E   EGL+  TG  SG +           A K    ++++F 
Sbjct: 124  SIEGHYIKWPRMDSEIIAE-HAEGLMATTGCPSGEVQTRLRLGHYDEALKAAAKYQEIFG 182

Query: 179  GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +  +  +  H    +R     ++ +A   ++  V TN+S +  E +   H  L+ V  +
Sbjct: 183  RENFFCEIMDHGIEIERRVRDGLIDIARALDMRFVVTNDSHYTYESERATHSALLCVQTA 242

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQV-HAPILPR 294
            + ++          +YLK+  +M +I       +  E T+ IA R           ++PR
Sbjct: 243  STIANPTFQFEGSGYYLKSAEQMYAIDTSDAWQQGCETTLMIAERVEPAGMFTKRNLMPR 302

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            F   + +     EE+  R +  AG++ R   G        +++R R+++EL VI  M F 
Sbjct: 303  FPVPDGE----TEESWFRKETWAGMDRRFPDGFD------EEHRTRVEYELGVILSMGFP 352

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFL+VADFI WAK   IPVGPGRGS AGS+ A+AL ITD+DP+  SLLFERFLNPDR+S
Sbjct: 353  SYFLVVADFIMWAKNQGIPVGPGRGSAAGSMVAFALGITDLDPIPHSLLFERFLNPDRVS 412

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD DIDF + RR +VIRYV +K+G +R+AQI+T+G+++AKAA++D  R L  PY+  DR
Sbjct: 413  MPDIDIDFDERRRGDVIRYVTDKWGEDRIAQIVTYGTIKAKAAIKDSSRVLGYPYAVGDR 472

Query: 475  LCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHA 525
            + K +P       + L  I D            R    +D  V ++++ ++ LEGL R A
Sbjct: 473  ITKAMPPAVMGKDIPLSGIFDPKHARYSEAGEIRSLYESDADVRKVIDTAKGLEGLIRQA 532

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
              HAAG+++   P+   +P++R       +TQF+    E  GL+K DFLGL+ LT++  +
Sbjct: 533  GVHAAGVIMSAEPIIDHIPVWRRDADGAIITQFDYPTCETLGLLKMDFLGLRNLTVMDDA 592

Query: 586  LDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            +  +   RG+KVDL  +  +D  +Y LL    TLG+FQL+   MR  L  M+PD  EDI 
Sbjct: 593  VRNVESNRGLKVDLMGLELNDPPSYELLARGDTLGVFQLDGGPMRSLLRMMRPDNFEDIS 652

Query: 645  ALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVMQI 698
            A+++LYRPGP+  ++ + Y  RKNG+++I  IHP +      +L  T G+I+YQEQVM I
Sbjct: 653  AVLALYRPGPMGANSHINYALRKNGQQEITPIHPQLAEPLADILDTTYGLIVYQEQVMAI 712

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ ++GY+L +AD+LRRAMGKK KE +DK+   F  G   NG S      ++++L  F+D
Sbjct: 713  AQRVAGYTLGQADLLRRAMGKKKKEILDKEFVPFSDGMKANGFSAEAIKMLWDILVPFSD 772

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            Y FNK+H A Y ++SY TA++K ++P E++AA +T   D+ +K   +  + R+  I+++P
Sbjct: 773  YAFNKAHTAGYGLVSYWTAYLKANFPAEYMAALLTSVRDDKDKSAIYLNECRRMGIRVLP 832

Query: 819  PSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKK 876
            P VNT   D+   GDN I   LAAI+ VG      I+     K  F S  DF  +VD+  
Sbjct: 833  PDVNTSDADYTAHGDNEIRVGLAAIRNVGVNVVESIVRNRKAKTRFASFPDFLDKVDAVV 892

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             N+R +ESL+ AGA D  G++R  L +  +        V+K       ++FA +     +
Sbjct: 893  CNKRTVESLIKAGAFDSLGHTRRGLAEKHEQAVDAVMGVKKKNAEGQFDLFAFDGEGGEE 952

Query: 937  KIT----LEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--A 988
                   +++FS    + S+    E+ +LG Y S HPL   + IL               
Sbjct: 953  DAAPIFGVQEFSDQEWDKSLLLSLEREMLGLYVSDHPLLGVEHILAAKADCSIAALNGGE 1012

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               G+ + +  ++   Q+K T++G      T  +     E  FFP
Sbjct: 1013 YPDGSVVTIGGIISGLQRKVTKQGKLWALATVEDMGGGLEVMFFP 1057


>gi|223939595|ref|ZP_03631470.1| DNA polymerase III, alpha subunit [bacterium Ellin514]
 gi|223891753|gb|EEF58239.1| DNA polymerase III, alpha subunit [bacterium Ellin514]
          Length = 1224

 Score = 1007 bits (2605), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1080 (36%), Positives = 580/1080 (53%), Gaps = 68/1080 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL+GA  L+ ++DK    + P++AITD   LF A++F + A   GI+P
Sbjct: 5    DFVHLHLHTEYSLLDGACRLDRLMDKAHELKFPSLAITDHGVLFGAIDFYKAARDKGIKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +      +              +VLL     GY+ LI+LV+  +L        
Sbjct: 65   IIGCEVYVAPHSRTEK-KSANGGRDVYNHLVLLAKDEIGYKNLIKLVTAAHLEG-YYYKP 122

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQR 188
            RI    L     EGLI L+G  +  I  A   ++ Q A   +  FK+ L  +  Y+ LQ 
Sbjct: 123  RIDKEILA-ANKEGLIALSGCLASEIPEAIMKDNLQKARDGIDWFKQTLGAENFYLELQN 181

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ +    ++  A    L LVA+N+  ++ +    AHD L+ +   T ++   R +
Sbjct: 182  HGIPEQAKVNKHLIPWAKEFGLKLVASNDVHYIEKGHSHAHDCLICIGTQTQLADTKRMK 241

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               +  YL++  EM + F+++PEA++NT+E+A +C+  ++      P F   E       
Sbjct: 242  YVEEQFYLRSAEEMKARFAEIPEAVQNTLEVAEKCNLEVEFGKLHYPVFDPPEA----YT 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYH--------------------------------- 333
             E  LR     GL  R      A+G                                   
Sbjct: 298  REGYLRKLLAEGLHRRYTMHVRAEGQEFIVEGIDDARRLPTYKVQSPDAKVQGNGNGHHV 357

Query: 334  ---------------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
                            +    RL  EL VI +  F  YFLIV DF+++ ++  I     R
Sbjct: 358  DEPITNLEDPAVKEAVKAVIDRLQMELKVIEKTGFISYFLIVGDFVRYGREQGISC-VAR 416

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GS AGS+  Y L I ++DP+R++LLFERFLNP+R++ PD DIDF  DRR +VI YV+ KY
Sbjct: 417  GSAAGSLVTYLLEIANVDPIRYALLFERFLNPERVNPPDIDIDFADDRRADVIEYVRKKY 476

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G+  VAQI+TFG++ AK+ LRDVGR + + Y   DRL K+IPN+    +  +A+      
Sbjct: 477  GNSSVAQIVTFGTMGAKSVLRDVGRVMGLGYGDCDRLAKMIPNELKMDL-HKALKQSPDL 535

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
            + A   +     L++ +  LE + R++S HAAG+VIGD+PL  L+P+ +D      VTQ+
Sbjct: 536  KAAYDTEEVTRELIDTAFALEDITRNSSVHAAGVVIGDQPLVNLLPLKQD-EEGTLVTQY 594

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617
             M  + + GL+K DFLGLKTLT+++ + + +   +GV V +  +P DD +TY LL    T
Sbjct: 595  AMNPVGELGLLKMDFLGLKTLTVIRNTCEMIKATKGVDVPIDNLPLDDKKTYDLLNNART 654

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            LG+FQLES GMR      Q   +E I ALV+LYRPGP+D I  +  R++G+ KI   HPL
Sbjct: 655  LGVFQLESGGMRDLCRKFQIGSVEHITALVALYRPGPMDLIPEFIKRRHGEVKIEYEHPL 714

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++ +  ET G+++YQEQVMQ AQ L+GY+L  AD+LRRAMGKK  EEM KQ+E F+ GA+
Sbjct: 715  LEKICSETYGIMVYQEQVMQAAQYLAGYTLGGADLLRRAMGKKKVEEMQKQRETFVKGAA 774

Query: 738  -KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
              N I    A  IF+LL KFA YGFNKSHAAAYA+++YQTA++K +YPVEFL+A MT +M
Sbjct: 775  SINKIPAAKANQIFDLLEKFAGYGFNKSHAAAYAIVAYQTAYLKANYPVEFLSAMMTNDM 834

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI--YYSLAAIKGVGTTTARHIM 854
             +  K+ +F  +AR   I+++PP VN   V F    N     + LAAIKGVG    + I+
Sbjct: 835  ADTSKLTEFIAEARSMGIEVLPPDVNESQVAFAPARNGEVIRFGLAAIKGVGEIAVQSIL 894

Query: 855  EAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            +A  A   F SL D C RVD + +NR+VLE+L+ +GA D F  +R  +   +D     A 
Sbjct: 895  DARKAGGEFTSLGDMCQRVDIRTVNRKVLEALIKSGACDAFKETRSTMYAHIDKALTRAA 954

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
             + ++R     ++F   +    DK   + K          + E+ +LGFY +GHP++ Y 
Sbjct: 955  GIIQDRQRGQSSMFDMLEENREDKPEVVAKLPEWPEHELLQAEKELLGFYVTGHPINPYV 1014

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANF 1031
            P+L K  +    E          R+  +V   QQ  ++K       VT  +     +   
Sbjct: 1015 PLLEKYALTKIAELPKLENRALTRIGGLVSVVQQGVSKKSNKPYAMVTLEDLDGTVQLLC 1074


>gi|184201117|ref|YP_001855324.1| DNA polymerase III subunit alpha [Kocuria rhizophila DC2201]
 gi|183581347|dbj|BAG29818.1| DNA polymerase III alpha subunit [Kocuria rhizophila DC2201]
          Length = 1184

 Score = 1007 bits (2604), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1064 (35%), Positives = 564/1064 (53%), Gaps = 53/1064 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL VH+ YS+L+GA  LN++ ++       ++A TD   +F A +F  KA AAGI+P
Sbjct: 9    GFTHLHVHTEYSMLDGAARLNDLFEECHRLGMDSLATTDHGFVFGAFDFWNKARAAGIKP 68

Query: 70   IIGCQLDIDM------QDNLKMTNQGKTPF---PTVPSIVLLVSTAEGYQRLIELVSRMY 120
            IIG +  +        +  +K  + G+           + LL  ++EG Q L    ++  
Sbjct: 69   IIGVEAYLTPGTARQDRTRVKFADGGRDDVSGAGAYTHMTLLAQSSEGMQNLFRASTKAS 128

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-G 179
            L  Q     R+    L + G +GLI  TG  SG +           A K    F+ +F  
Sbjct: 129  LEGQLY-KPRMDRELLNQYG-KGLIATTGCPSGEVQTRLRLGQYDEAVKAAAEFRDIFGA 186

Query: 180  DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +  Y  L  H  G ++     +++LA    LPLVATN+  +   ED ++H  L+ V   +
Sbjct: 187  ENFYCELMDHGLGIEKRVTQDLLRLAKELNLPLVATNDLHYTHAEDAKSHAALLCVQSGS 246

Query: 239  VVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             +    R +   D  YLK+  +M  +F D P+A +NT+EIA RC       A  +PRF  
Sbjct: 247  TLQDPKRFKFDADEFYLKSPEQMRELFRDFPDACDNTLEIAERCEVEFDTSANYMPRFPT 306

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E +D    E +    +   GL  R  +G         D R++ ++E  +I +M F GYF
Sbjct: 307  PEGED----ETSWFIKEVEKGLHYRFPEGI------PDDVREQAEYEKKIIIQMGFPGYF 356

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+VADFI W+K N I VGPGRGSGAGS+ AYA+ IT+++PL   L+FERFLNPDR+SMPD
Sbjct: 357  LVVADFINWSKDNGIRVGPGRGSGAGSMVAYAMRITELNPLAHGLIFERFLNPDRVSMPD 416

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DF   RR EVI YV  KYG ERVA I+T+G+++AK AL+D  R L  P+S  +RL K
Sbjct: 417  FDVDFDDRRRSEVIHYVTEKYGDERVAMIVTYGTIKAKQALKDSSRVLGYPFSMGERLTK 476

Query: 478  LIPND-PAHPVSLQAIADD--------SRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
             +P D     +SLQ + D            RE    DP   ++ E +Q LEGL R    H
Sbjct: 477  AMPPDVMGKGISLQDVYDKDAKRYDEAGELREVLEDDPESMKVFETAQGLEGLKRQWGVH 536

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+++   PL  ++P+ R  +    +TQF+    E  GLIK DFLGL+ LT++  +L+ 
Sbjct: 537  AAGVIMSSDPLIDIIPLMRREQDGQVITQFDYPTCEGLGLIKMDFLGLRNLTIISDALEN 596

Query: 589  LA--QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            +A  + G  +DL  +P DD  +Y LL    TLG+FQL+   MRQ L+ M+PD  EDI A 
Sbjct: 597  IALNRDGFVLDLEHLPIDDPGSYELLARGDTLGVFQLDGGPMRQLLKLMRPDNFEDISAT 656

Query: 647  VSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQEQVMQIAQ 700
            ++LYRPGP+  ++   Y  RKNG ++I  IHP +    + +L  T G+I+YQEQVM IAQ
Sbjct: 657  IALYRPGPMGANSHTNYALRKNGAQEITPIHPELAEPLEDILGTTYGLIVYQEQVMAIAQ 716

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             ++GYSL +AD+LRRAMGKK K E+DKQ + F  G    G S+     ++++L  F+DY 
Sbjct: 717  KVAGYSLGQADILRRAMGKKKKAELDKQYQGFHQGMVDRGYSEAAIKALWDILLPFSDYA 776

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNK+H+AAY ++SY TA++K HYP E++AA +T   D+ +K+  +  + R   I ++PP 
Sbjct: 777  FNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLAMYLTECRHMGITVLPPD 836

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNR 879
            VN   ++F      I + + A++ VG    + +++A      F S  DF ++V +   N+
Sbjct: 837  VNESELNFTPVGTDIRFGMGAVRNVGANVVQAMVDARNEQGKFTSFNDFLAKVPAVVCNK 896

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH--ENIFAHEKGTFSDK 937
            R +ES++ AGA D  G++R  L+   +   +     +K   N     +IF+       ++
Sbjct: 897  RTIESMIKAGAFDQLGHTRRSLVMCHEQAVEDVVAQKKKEDNGEFTFDIFSMGGSEDDEQ 956

Query: 938  ----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE----ESVAT 989
                + +              E+ +LG Y S HPL      L +           E    
Sbjct: 957  ETFSVEVPDVPEWERKDLLAFEREMLGLYVSDHPLRGLDDALGQYTDTAIAPLLTEENTR 1016

Query: 990  IRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANFF 1032
              G  + +  M+ S  ++  +  G+    V   + +   E  FF
Sbjct: 1017 PDGAVVTIGGMITSLSRRIAKSSGNAYARVELEDRSGSIEVMFF 1060


>gi|254804357|ref|YP_003082578.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha14]
 gi|254667899|emb|CBA04031.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha14]
          Length = 1144

 Score = 1007 bits (2604), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1034 (38%), Positives = 581/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTEAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDYLIKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+ L  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       +D+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIIDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++  +   +       +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQVEIMV 1014


>gi|304388354|ref|ZP_07370467.1| DNA-directed DNA polymerase III alpha subunit [Neisseria meningitidis
            ATCC 13091]
 gi|304337671|gb|EFM03827.1| DNA-directed DNA polymerase III alpha subunit [Neisseria meningitidis
            ATCC 13091]
          Length = 1144

 Score = 1007 bits (2604), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1034 (38%), Positives = 582/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   D                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGNPDAPDK----------PFRAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYMELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TPD +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   +     
Sbjct: 234  PRDFTPDQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG---- 289

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 290  LSRDDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+SL  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       +D+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIIDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    + +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMNNAD--QKAANTNQGGLFDMMEDAIEP-VRLIDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQVEIMV 1014


>gi|325478762|gb|EGC81873.1| putative DNA polymerase III subunit alpha [Anaerococcus prevotii
            ACS-065-V-Col13]
          Length = 1150

 Score = 1007 bits (2604), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1052 (34%), Positives = 585/1052 (55%), Gaps = 48/1052 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G   +N +LDK       +IAITD   ++ A+EF ++A A GI+PI
Sbjct: 5    FTHLHVHTEYSLLDGFSRINVLLDKCKELGMNSIAITDHGEMYGAIEFYKQAVARGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +   D+       +        ++LL    +GY+ LI++VS  Y+ +      R
Sbjct: 65   IGCEVYVSENDHTIKEPNNRR----YYHLILLAKNNDGYKNLIKIVSEAYV-NGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            +   ++++     L+ L+   +G + +       + A++  + ++  F     ++ LQ H
Sbjct: 120  VSFDYIKK-HANNLVALSACLNGEVSQRLIEGDYEAAKETAIKYESTFGKGNYFLELQNH 178

Query: 190  RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
               ++   ++ + ++     +PLVATN+  ++++ED    DVL  +    +V  +DR   
Sbjct: 179  GIKEQNTVNRGLDKIHRDLNIPLVATNDIHYVNKEDAYYQDVLQCIQTGKLVKDEDRMKM 238

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + + YLK+  EM  +FS    A+ENT  I+  C+     H P LP F + E       +
Sbjct: 239  PSNEFYLKSYDEMNELFSSYEGAIENTQVISDMCNVSFTFHEPHLPYFSKVEE---GLTK 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+     GL  +        G   +D R+R + E+N+I  M +  YFLIV DF+++A
Sbjct: 296  LQYLKKLVDQGLVQKY-------GVITEDIRKRSEMEINIIHNMGYVDYFLIVWDFVRYA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            + ++I VGPGRGS AGS+ +YAL IT IDP+++ LLFERFLNP+R+SMPD DIDF    R
Sbjct: 349  RDHDIAVGPGRGSAAGSIVSYALDITQIDPIKYDLLFERFLNPERVSMPDIDIDFDYVLR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D+V+ YV + YG + V+QI+TFG +QA+ A+RDVGR L + Y++VD++ KLIP      +
Sbjct: 409  DKVVDYVNDLYGRDHVSQIVTFGRMQARNAIRDVGRVLDISYAKVDKIAKLIPTTIGMTI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A     +F+E   +D    RL++ ++K+EGL RH S HAAG+VI   PL+ ++P+  
Sbjct: 469  D-KAFDASPKFKEMYDSDVESKRLIDTARKVEGLPRHTSIHAAGVVISKDPLTDIIPL-- 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDH 606
             + +DL VTQF+M  IE+ GL+K DFLGL+ LT+++ ++  +   RG++VDLS I  +D 
Sbjct: 526  ALSNDLVVTQFDMTEIEELGLLKMDFLGLRNLTVIKNTIKDVRKNRGIEVDLSKIDVNDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
                      T+GIFQ ES GMR  L+ ++P   +D+IA  SL+RPGP+D I  Y + KN
Sbjct: 586  NVIDQFNKARTIGIFQFESPGMRNFLKNLKPTVFDDLIAANSLFRPGPMDEIPNYIHNKN 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              + +  I P + P+L  T G+I+YQEQVMQI Q L+GYSL EAD LRRAM KK    M+
Sbjct: 646  NPKDVKFIDPALRPILDVTYGIIVYQEQVMQIVQQLAGYSLGEADNLRRAMSKKKMSVME 705

Query: 727  KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              ++ FI             G  +NG+++  A  I++ +  FA Y FNKSH+AAY++++ 
Sbjct: 706  ANRDIFIHGKVDSDGNIEIPGCIRNGVNEKAANQIYDEMISFAKYAFNKSHSAAYSLVAV 765

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YP E++A  ++  MD+  K+  +  +++   I+++PP VN    +F V + +
Sbjct: 766  QTAYLKHYYPEEYMANLISSVMDSSSKLYLYVNESKSLGIEVLPPDVNKSLAEFTVEEGK 825

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890
            I + L+ IK VG  T + I+ +   D  F   +DF  R+   DS+ LN++ +ESL+ AGA
Sbjct: 826  IIFGLSGIKNVGVNTIKSIVASRKKDGSFIDFDDFLQRIYEFDSRSLNKKAVESLIKAGA 885

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENS 948
             D  G++R  L+   +          K       ++F    E      K   +     N 
Sbjct: 886  FDSLGHNRASLMAHYEKAMDAVHENRKVNVKGQIDMFGGFTENKEKKTKTKYDNIKEYNK 945

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMG--IKGYEESVA-----TIRGNNIRLAAMV 1001
              + + E+ VLGFY S HPL  YK +L K       Y +++       +    + +A ++
Sbjct: 946  KTKLKLEKEVLGFYISDHPLSEYKDVLDKEVNFSTDYRDNMNDFQIQKLDRKFVTMAGVI 1005

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              K +  T+KG  + + +  +     E   FP
Sbjct: 1006 TEKSEIMTKKGQLMSFASLEDMYGTIEIVIFP 1037


>gi|319948506|ref|ZP_08022638.1| DNA polymerase III subunit alpha [Dietzia cinnamea P4]
 gi|319437803|gb|EFV92791.1| DNA polymerase III subunit alpha [Dietzia cinnamea P4]
          Length = 1181

 Score = 1007 bits (2604), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/1067 (31%), Positives = 541/1067 (50%), Gaps = 56/1067 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +S+L+G   ++ +  + +    PA+ +TD  N++ A +F ++A   G++PI
Sbjct: 5    FVHLHNHTEFSMLDGMAQIDPLFAEASRLGMPAVGMTDHGNMYGASDFYKQAKKTGVKPI 64

Query: 71   IGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            IG +  +  +   +                        + ++   A G + L  L S   
Sbjct: 65   IGIEAYVAPESRFEKKRILWGEKHQKSDDVAGSGAYTHMTMVAENATGLRNLFRLSSLAS 124

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-G 179
               Q  +  R+    L E  +EG+I  +G  SG I         + A +    ++ +F  
Sbjct: 125  YEGQLGKWARMDAEILAEY-SEGIIATSGCPSGEIQTRLRLGHIKEAYEAAEKWQSIFGK 183

Query: 180  DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            D  ++ L  H    +R     +++L     +P + TN+  +++ E   AH+ ++ V    
Sbjct: 184  DNFFLELMDHGIDIERRVREDLLKLGRDLGMPPLVTNDCHYVTREQAHAHEAMLCVQTGK 243

Query: 239  VVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPI--LPR 294
             ++ ++R +   D +YLK+  EM + + S++P A +NT+ IA R      +  P   +P+
Sbjct: 244  TLADENRFKFDGDGYYLKSAQEMRAQWDSEVPGACDNTLWIAERVQPYDDIWTPRDRMPK 303

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            F   E +     E+  L  +   GL+ R   G        Q+Y +R +FEL VI    + 
Sbjct: 304  FPVPEGE----TEDTWLAKEVHKGLQWRFPDGV------PQEYIERANFELEVIKGKGYP 353

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFL+V D I+ A+   I VGPGRGS AG++ AYAL IT+IDP+   LLFERFLNP+R S
Sbjct: 354  GYFLVVGDLIEHARSIGIKVGPGRGSAAGALVAYALKITNIDPIEHGLLFERFLNPERPS 413

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQV 472
             PD DIDF   RR E+IRY  +K+G +++AQ+ITFG+++ KAA++D  R    Q  Y+  
Sbjct: 414  APDIDIDFDDRRRGEMIRYASDKWGADKIAQVITFGTIKTKAAIKDAARVNFGQPGYAIA 473

Query: 473  DRLCKLIPN-DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYR 523
            DR+ K +P    A  + L  I D            R+    DP V R+ + ++ LEG+ R
Sbjct: 474  DRITKALPPAIMAKDIPLSGITDPKHERYGEAAEVRQLLETDPDVKRIYDTARGLEGMVR 533

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
             A  HA  +++   PL  ++PM++  +    +T ++    E  GL+K DFLGL+ LT++ 
Sbjct: 534  QAGVHACAVIMSSEPLLDVIPMWKRAQDGAIITGWDYPSCEDIGLLKMDFLGLRNLTVIG 593

Query: 584  KSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
              L+ +   RG ++DL  +  DD  TY LL    TLG+FQL+S GMR+ L+ M+P    D
Sbjct: 594  DCLENIKLNRGEEIDLDTLSTDDQATYDLLARGDTLGVFQLDSGGMRELLKRMKPTGFND 653

Query: 643  IIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVM 696
            I+A ++LYRPGP+       Y +RKNGK+++V IHP ++     +L ET G+I+YQEQ+M
Sbjct: 654  IVAALALYRPGPMGMGTHWNYADRKNGKQELVPIHPELEEPLREILGETHGLIVYQEQIM 713

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
             I++ L+GY+  EAD  R+AMGKK  E +  + E+F  G  + G SK     ++  +  F
Sbjct: 714  AISRELAGYTAGEADGFRKAMGKKKAEVLAAEYEKFSGGMFERGFSKEAVDALWGTIEPF 773

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A Y FNKSHAA Y ++S+ T ++K +YP E++AA +T   D+ +K   +  + RQ  I++
Sbjct: 774  ASYAFNKSHAAGYGLVSFWTGYLKANYPAEYMAALLTSVGDDKDKAALYLSNCRQMGIKV 833

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSK 875
            +PPSVN    +F      I + L A++ VG      I+ A  A   F    D+ +++D  
Sbjct: 834  LPPSVNESLTNFASVGKDIRFGLGAVRNVGAQVVDSIVAAREAKGEFTDFSDYLAKIDQT 893

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
               ++V ESL+ AGA D  G+ R  L     +  +     +K       ++F     T +
Sbjct: 894  ACTKKVTESLIKAGAFDSLGHPRKGLFLVHADAVESVMSTKKAEAVGQFDLFGGGDDTAA 953

Query: 936  D-------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987
            D        + +      ++  +   E+ +LG Y SGHPLD  +  L             
Sbjct: 954  DTGFGDVFAVRVPD-EEWDTKQKLALEREMLGLYVSGHPLDGLEAALEAKTDTNIATIHE 1012

Query: 988  -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G  + +  ++    ++  + G     VT  +     E  FFP
Sbjct: 1013 GELPHGTAVTIGGIISGVDRRVNKNGEPWAIVTIEDFNGSVEVLFFP 1059


>gi|319639431|ref|ZP_07994181.1| DNA polymerase III subunit alpha [Neisseria mucosa C102]
 gi|317399326|gb|EFV79997.1| DNA polymerase III subunit alpha [Neisseria mucosa C102]
          Length = 1144

 Score = 1007 bits (2604), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1034 (38%), Positives = 584/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALCISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +      ++   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNSNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F++ +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDYLVKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQANRGRVIEYVREKYGADAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+SL +A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLSLEKAMEAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       VD+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKTTTGDIVDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VQLIDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQIEIMV 1014


>gi|255065760|ref|ZP_05317615.1| DNA polymerase III, alpha subunit [Neisseria sicca ATCC 29256]
 gi|255050078|gb|EET45542.1| DNA polymerase III, alpha subunit [Neisseria sicca ATCC 29256]
          Length = 1144

 Score = 1007 bits (2603), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1034 (37%), Positives = 583/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            P+    + I   +                  +L++    GY RL EL++  Y+  ++   
Sbjct: 64   PVGAADVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTAAYVGKERNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDYLVKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P++  D+L KLIP 
Sbjct: 410  FCQSNRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPL 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+ L  A+  + + +E        D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLGLDDAMKAEPQIQELIEV-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       VD+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIVDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQAAYKIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VQLIDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQIEIMV 1014


>gi|269837330|ref|YP_003319558.1| DNA polymerase III, alpha subunit [Sphaerobacter thermophilus DSM
            20745]
 gi|269786593|gb|ACZ38736.1| DNA polymerase III, alpha subunit [Sphaerobacter thermophilus DSM
            20745]
          Length = 1167

 Score = 1007 bits (2603), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1050 (34%), Positives = 555/1050 (52%), Gaps = 45/1050 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F HL +H+ +SLL+G   + + + +        IAITD   ++  +++ + A A
Sbjct: 1    MTARP-FAHLHLHTEFSLLDGMGRIKDYMARAREFGMEHIAITDHGVMYGVIDWYKAARA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              + PI+G +  +          Q          ++LL     GY+ L+ L SR  L   
Sbjct: 60   HDLHPILGIEAYLAPGSIEDREKQS-------YHLLLLAENERGYRNLLRLASRASLEG- 111

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
                 R+ L  L  +  +G+I  +    GP+   F     + A +     K++F  D  Y
Sbjct: 112  FYYKPRVDLDMLNSL-RDGIICTSACLGGPVANNFLQGRDEEAVRLAGILKEMFGPDHFY 170

Query: 184  VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H     R    Q+++LA   +LPLVATN+  ++ + D    ++L+ +  +T +  
Sbjct: 171  IEIQDHGIEGQRQTNPQLIELARKLDLPLVATNDVHYVDKSDAPLQELLVCIQTNTTLHD 230

Query: 243  KDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              R R+  D  Y K+  EM  +F ++PEALENT+ IA RC+  L+     LP     E  
Sbjct: 231  PKRLRMESDQLYFKSPEEMWRLFGEVPEALENTIRIAERCNVDLEFGRLHLPDPGIPEGM 290

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                     L      G+  R  +         ++ R+RL++EL+VI    FS Y LIV 
Sbjct: 291  ----TPHEYLCQLCWDGVRRRYPE-------VTEEVRRRLEYELDVIQETGFSSYMLIVR 339

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF ++A++  I  G  RGS A S+  Y L ITDIDPL   L+FERFLN +R  MPD D+D
Sbjct: 340  DFAEFARQRRISFG-VRGSAAASIVLYTLGITDIDPLANRLVFERFLNRERREMPDIDMD 398

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR EVI YV +KYGH+RVAQIITFG++ AKAA+RD GRA+   Y+ VDR+ +LIP+
Sbjct: 399  FADNRRAEVIDYVASKYGHDRVAQIITFGTMGAKAAIRDTGRAMGWAYNDVDRIARLIPS 458

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  +A+ +    R+    DP+   L++ +++LEG+ RHA THAAG+VI   PL +
Sbjct: 459  TLNITLD-KALQESPELRQLYETDPACRELIDNAKRLEGISRHAGTHAAGVVIAADPLVE 517

Query: 542  LVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
             +P+ R  R++   LP TQF M+ + + GL+K DFLGL  LT+L ++++ + Q   V++D
Sbjct: 518  HLPLQRPARAEEGALPTTQFPMETVAEIGLLKMDFLGLANLTILGEAVELIRQTTGVEID 577

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               IP  D +TY +L+   T G+FQLES+GMR+ +  ++P  I ++ A+V+LYRPGP+ +
Sbjct: 578  PKKIPDGDEKTYAMLSQGETFGVFQLESAGMRRYIRELRPSSIAELAAMVALYRPGPMQH 637

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y   K+G E I   HP +  +L ET GVI+YQ+QV+ IA+  +GY+L EAD++R+AM
Sbjct: 638  IPTYCRAKHGLEPIRYPHPDLAEILDETYGVIVYQDQVLLIARKFAGYTLGEADIMRKAM 697

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKKI E M  ++ERF+ GA + G S   A N+F L+  FA Y FNK+HA  YA ISYQT+
Sbjct: 698  GKKIPEVMKAERERFLRGAQEKGYSAEDAQNVFNLIEPFAGYAFNKAHAVCYATISYQTS 757

Query: 778  WMKTHYPVEFLAASM----TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--- 830
            ++K +YP E++ A +    +      +++     + ++  I ++PP +N   VDF++   
Sbjct: 758  YLKANYPAEYMTAVLRGAPSHPSGATQRVAAAVAECQKLGIPVLPPDINKSGVDFEIEIL 817

Query: 831  --GDNRIYYSLAAIKGVGTTTARHIMEASA---DKPFDSLEDFCSRVDSKKLNRRVLESL 885
              G   I + LA +K VG      I+ A      + F+S E FC  VD   +NRRV ESL
Sbjct: 818  EDGTKAIRFGLAIVKNVGEAAVESIVAARKSLPGERFESFEQFCDTVDWTVVNRRVAESL 877

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT--LEKF 943
            +  GALD  G  R  LL  L+     AQ  ++       ++F+              +  
Sbjct: 878  IKCGALDSLG-DRATLLAVLEQAISAAQSRQRAAKRGQIDLFSAAPVAAPALALAMPDDV 936

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                 +     E+ +LG Y S HPL+   P++R  G     E      G  I    M+  
Sbjct: 937  PEIPRATLLAWEKELLGLYLSSHPLNDLVPLIRDGGYVRLAEIDEETVGQQIEAIVMITG 996

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++  T+    +      +     E   FP
Sbjct: 997  MRKLTTKTNRVMAICQLEDQTGAIEMVVFP 1026


>gi|21230815|ref|NP_636732.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv.
            campestris str. ATCC 33913]
 gi|66769186|ref|YP_243948.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv.
            campestris str. 8004]
 gi|21112417|gb|AAM40656.1| DNA polymerase III alpha chain [Xanthomonas campestris pv. campestris
            str. ATCC 33913]
 gi|66574518|gb|AAY49928.1| DNA polymerase III alpha chain [Xanthomonas campestris pv. campestris
            str. 8004]
          Length = 1196

 Score = 1007 bits (2603), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1082 (38%), Positives = 606/1082 (56%), Gaps = 79/1082 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDVTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHAN-LFAL-AGRDSLAGRLFAEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFAAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   YLK+  EM ++F+D+P+A++NT+ +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADVPDAIDNTLALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E + +    ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPEDETL----DSWIRSQSRDGLAARLEKNPIAPGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLY 522
              VD + KLIPN     +   A+ +            +    +  V  L++++++LE L 
Sbjct: 464  GLVDSVAKLIPNILGITLK-DAMGEGKDTEMASPELIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PLS+  P++ +         PVTQF+   +E+ GL+KFDFLGL+T
Sbjct: 523  RNAGKHAGGVVIAPEPLSEFCPLFAEHDEGGRGKNPVTQFDKNDVEEVGLVKFDFLGLRT 582

Query: 579  LTLLQKSLDFLAQRGV-----KVDLSLIPFDDHETYHL-LTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  +  R        VD++ IP DD  TY     +  T  +FQ ESSGMR+ L
Sbjct: 583  LTIIDWAVKAINVRHARAGIDPVDITAIPLDDAPTYKGVFASGNTGAVFQFESSGMRRLL 642

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +N RK+G++ I+   P  + +LK+T G+++YQ
Sbjct: 643  KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQDIIYPDPRTEAILKDTYGIMVYQ 702

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703  EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAQKADEIFDL 762

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             + ++PP VN     F+        Y L AIKGVG      I+E    + P+ +L DFC+
Sbjct: 823  GLTVLPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERLRNGPYTTLLDFCT 882

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883  RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 931  KGTFSDK-ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE----- 984
              +     + L +            E+  LGFY SGHP D ++  +R++           
Sbjct: 943  DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVRELVGCDLSALDKI 1002

Query: 985  --------------ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                          E  A     +  LA  VV  ++    KG    +V   +     E +
Sbjct: 1003 LASQQRGGGGGGDGEKRAWRPEVSAILAGQVVGVRR----KGDSQVFVQLEDGRGRVECS 1058

Query: 1031 FF 1032
             F
Sbjct: 1059 AF 1060


>gi|261381235|ref|ZP_05985808.1| DNA polymerase III, alpha subunit [Neisseria subflava NJ9703]
 gi|284795857|gb|EFC51204.1| DNA polymerase III, alpha subunit [Neisseria subflava NJ9703]
          Length = 1144

 Score = 1006 bits (2602), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1034 (38%), Positives = 582/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+++G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSIIDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDYLVKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+SL +A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLSLEKAMEAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       VD+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIVDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L   S+ + S +   E+ 
Sbjct: 888  RAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VQLIDASMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   + ++              +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVHQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + +   E   
Sbjct: 1001 VSLEDLSGLVEIMV 1014


>gi|254671593|emb|CBA09263.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha153]
          Length = 1144

 Score = 1006 bits (2602), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1034 (38%), Positives = 581/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTAAYVGKDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   +     
Sbjct: 234  PRDFTPGQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG---- 289

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 290  LSRDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+SL  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       +D+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIIDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    + +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMNNAD--QKAANTNQGGLFDMMEDAIEP-VRLIDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQVEIMV 1014


>gi|88607188|ref|YP_505564.1| DNA polymerase III, alpha subunit [Anaplasma phagocytophilum HZ]
 gi|88598251|gb|ABD43721.1| DNA polymerase III, alpha subunit [Anaplasma phagocytophilum HZ]
          Length = 1127

 Score = 1006 bits (2602), Expect = 0.0,   Method: Composition-based stats.
 Identities = 470/1025 (45%), Positives = 664/1025 (64%), Gaps = 31/1025 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLLEG + + +++      + PA+A+TD+ NLF +LEFS  A  AG+QPI
Sbjct: 5    FVHLRTHSDYSLLEGMIKVESLVAMCVEQKMPAVALTDSGNLFGSLEFSDCAARAGLQPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC + ++   N             + +I+LL  +AEG+  L  L+S  +   Q ++  R
Sbjct: 65   IGCNIMVEESGN------------NLGNILLLAKSAEGFANLTNLISNGFNNSQLEKINR 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + +  L ++   GLI LTGG    + RA   N   +  + L +  ++F D +YV LQRH 
Sbjct: 113  VNIDDLLKL-NGGLIALTGGHDDILARALLNNGDDL--RALDSILQVFKDNVYVELQRHG 169

Query: 191  GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                R  E  +++ AY   +PLVATN+  F    D++AHD+L  ++    V Q+DR R+T
Sbjct: 170  LNGQREVEELLIRFAYERNIPLVATNDVFFACRGDFQAHDILSCISTGAYVVQEDRHRLT 229

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P+HY K  SEM  +FSD+PEA+ NT  IA+RCSFI +V  P LP F   E     + E  
Sbjct: 230  PEHYFKTASEMYELFSDVPEAVLNTSLIAQRCSFIQEVRKPQLPHFPCFEG----RTEAE 285

Query: 310  ELRNKAVAGLEVRLA-QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            EL   A+AGLE+RL  +G          Y +RL +EL V+  M++SGYFLIVADFI+W+K
Sbjct: 286  ELTECALAGLEIRLKSKGIGDDEEQRDLYLKRLKYELGVVISMEYSGYFLIVADFIRWSK 345

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++RD
Sbjct: 346  QNDIMVGPGRGSGAGSLIAWSLGITDLDPIEFGLIFERFLNPDRVSMPDFDIDFCQEKRD 405

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +VI YV+ KYG   VA IITFG LQA+A LRDVGR +Q+PY+Q+DR+CK+IP+DP  PV+
Sbjct: 406  KVIEYVKEKYG--YVAHIITFGKLQARAVLRDVGRVMQIPYAQIDRICKMIPHDPISPVT 463

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L +AI  D   +  +  D +V +L+EIS KLEGLYRHAS HAAGIVI D+PL   VP+Y 
Sbjct: 464  LLEAIEMDQNLKAEQENDETVAKLIEISLKLEGLYRHASVHAAGIVICDQPLENFVPLYY 523

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D  S LP+TQ+NMK++EKAGL+KFDFLGL+TLT++ +    +  RG +++LS IP +D +
Sbjct: 524  DKSSSLPITQYNMKYVEKAGLVKFDFLGLRTLTMIDQICSLIRARGEEIELSKIPLNDKK 583

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L+   ++G+FQLES+GMR+A+  ++PD I+DIIAL+SLYRPGP++NI +Y +RK+G
Sbjct: 584  TYEMLSAGDSIGVFQLESAGMREAISKLRPDSIQDIIALISLYRPGPMNNIAIYISRKHG 643

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E+   IHP+++ +LKET GVIIYQEQVM+IA++L+GYSL EAD+LRRAMGKKIKEEMD+
Sbjct: 644  LEEPDYIHPMLECVLKETFGVIIYQEQVMEIARILAGYSLGEADLLRRAMGKKIKEEMDR 703

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q++ F+ GA  NGI ++ A  IF+L+AKFA YGFNKSHAAAYA+IS+QTA+++ +Y  EF
Sbjct: 704  QRQDFVDGAVSNGIEESKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYLRANYTKEF 763

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              ASM L++D+ +K+   CQ A+   I +MPP +N    +F V  N I Y L A+K VG 
Sbjct: 764  FTASMNLDIDDKDKLGLLCQQAKMCGIDVMPPDINLSSAEFTVSGNSIRYGLGALKNVGQ 823

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             TA  I+       +  + DF   V  +   +R LESL+ +G+LD    +R QL  SL  
Sbjct: 824  LTAHEILPV-EGGRYSDIWDFAGNVRIRSPLKRTLESLIKSGSLDGIHPNRRQLFASLGI 882

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            I    +  + +      ++F     +  ++  LE+        + E+E   +GFY   HP
Sbjct: 883  ILNIIENKKVSMDAHQFSLF-----SEKEEGQLEEVDDWTEDEKIEHEFATIGFYLRYHP 937

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L  Y+ +L K G++    +         + A +V S +  ++    R   V  S+P    
Sbjct: 938  LSKYEQVLGKFGVRFVSSTQEEKESGVTKRAGVVSSVK-MRSANKERFAIVRVSDPHGVN 996

Query: 1028 EANFF 1032
            +  F+
Sbjct: 997  DVAFY 1001


>gi|194365029|ref|YP_002027639.1| DNA polymerase III subunit alpha [Stenotrophomonas maltophilia
            R551-3]
 gi|194347833|gb|ACF50956.1| DNA polymerase III, alpha subunit [Stenotrophomonas maltophilia
            R551-3]
          Length = 1196

 Score = 1006 bits (2602), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1082 (38%), Positives = 615/1082 (56%), Gaps = 77/1082 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLN--------------NILDKIAADQQPAIAITDTN 50
            +  S  FVHL VH+ +SL +  + +               N+L +      PA+A+TD N
Sbjct: 1    MSNS-RFVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRSVELGLPALAVTDLN 59

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            NLF+ ++F + A   GI+PI G         ++ +  +G+ P+     + LL    EGY 
Sbjct: 60   NLFALVKFYKAAEGVGIKPIAGA--------DVLIAEEGQDPW----RMTLLCRDREGYL 107

Query: 111  RLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
             L  L++R ++     +  V I   WL + G   L  L  G      R       ++AE+
Sbjct: 108  SLSRLLTRAWMEGHRPEGGVAIHPDWL-KAGNANLFAL-AGRQSLAGRLALDGKHELAEQ 165

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAY-THELPLVATNNSLFLSEEDYEAH 228
            +L  ++++FGD L++ L R         +Q   +A     LP+VA+N+  FLS  D+ AH
Sbjct: 166  QLADWQRVFGDGLHLELTRTGREGEETFNQFALMAAGQRGLPVVASNDVRFLSPTDFSAH 225

Query: 229  DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            +  + ++   V+    RPR  +   YLK+  EM ++F+D+P+A++NT+ +A RC+  +++
Sbjct: 226  EARVCISTGRVLDDPKRPREYSDQQYLKSAEEMCALFADIPDAIDNTLALAERCNIEMRL 285

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                LP +   + + +    +  ++  +  GLE RL +  +A G   ++Y +RL+FELN 
Sbjct: 286  GTYFLPNYPVPDDETL----DTWIQKMSRDGLEERLEKNPLAPGKTREEYFERLEFELNT 341

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERF
Sbjct: 342  IIKMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERF 401

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L  
Sbjct: 402  LNPERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGF 461

Query: 468  PYSQVDRLCKLIPNDPAHPVSL---------QAIADDSRFREARLADPSVDRLLEISQKL 518
            PY  VD + KLIPN     +            +    +   +   ++  V  L++++ +L
Sbjct: 462  PYGLVDGVSKLIPNILGIHLKDALGKGKEGPSSEMASAELIQRYESEDDVRDLIDLALQL 521

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFL 574
            E L R+A  HA G+VIG  PLS+  P+Y +   +     PVTQF+   +E+ GL+KFDFL
Sbjct: 522  EDLTRNAGKHAGGVVIGPEPLSEFCPLYAEHDENGLGKNPVTQFDKNDVEEVGLVKFDFL 581

Query: 575  GLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGM 628
            GL+TLT++  ++  + +R        VD++ IP DD  TY  +     T  +FQ ESSGM
Sbjct: 582  GLRTLTIIDWAVKAINKRHERAGIPPVDIAAIPLDDTPTYKDIFANGNTGAVFQFESSGM 641

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            R+ L+  +PD  ED+IALVSLYRPGP+D I  +N RK+G+E+I+   P  + +LK+T G+
Sbjct: 642  RRLLKDARPDRFEDLIALVSLYRPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGI 701

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++YQEQVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K+G+ +  A  
Sbjct: 702  MVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKDGVDEAKADA 761

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            IF+L+ KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ ++DN EK+  F  +
Sbjct: 762  IFDLMEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDLDNTEKVVGFLDE 821

Query: 809  ARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLE 866
             R   + ++PP VN     F+ V  + I Y L AIKGVG      +++       +  L 
Sbjct: 822  VRNLGLTVLPPKVNHSAFMFEAVTPDTIQYGLGAIKGVGQGACEAVVDERLKGGDYKDLL 881

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DFC+RV S KLNRR LE+++  GALD  G++R  L+  L  + K  + + + R +   ++
Sbjct: 882  DFCTRVGSAKLNRRTLEAMINCGALDELGHNRASLMLQLPEVIKATEQMARERASGQNSL 941

Query: 927  FAH-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY-- 983
            F   +  T + ++ L +        R   E+  LGFY SGHP D ++  +R +       
Sbjct: 942  FGGPDPSTVTIQLDLPEAEEWPLLQRLNGERDTLGFYLSGHPFDPWRDDVRDLVGTDLGS 1001

Query: 984  -------------EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                                      LA  VV  ++    KG    ++   +     E +
Sbjct: 1002 VEKIWSANSGGGGGGEKRWRPEVQTVLAGQVVGVRR----KGESQIFIQLEDGRGRVECS 1057

Query: 1031 FF 1032
             F
Sbjct: 1058 AF 1059


>gi|260222868|emb|CBA32866.1| DNA polymerase III subunit alpha [Curvibacter putative symbiont of
            Hydra magnipapillata]
          Length = 1244

 Score = 1006 bits (2601), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1054 (38%), Positives = 598/1054 (56%), Gaps = 50/1054 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   +++++   A D QPA+AITD NNLF A++F +     G++P+
Sbjct: 57   FVHLRLHTEFSVVDGTTRIDDVIKMAAKDGQPALAITDLNNLFGAIKFYKGGRGKGVKPV 116

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ ++                 V  I+LLV   +GY  + EL++R +  +  K    
Sbjct: 117  IGAEIVLE---------GLGGDATAVTRIILLVQNKQGYLNISELIARAFTQNVVKNQAV 167

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            I ++WL+E+  EGLI L+G  +GP+ +A     +  A    L    +F  R Y+ LQR  
Sbjct: 168  IKMAWLKEL-NEGLIALSGAQAGPVGQALVQGDTARAHDVALQLAGVFPHRFYIELQRAG 226

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D       V+LA   +LP+VAT+   F  ++D+EAH+  + +A   ++S   R  R 
Sbjct: 227  RADDEAHVVAAVKLAARMKLPVVATHPIQFAEQDDFEAHEARICIADGEILSNPKRVRRF 286

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K+ ++M ++F+D+P A+ NT+EIA+RCS  L +  P LP F     +  +   E
Sbjct: 287  TREQYFKSAAQMEALFADIPSAIANTMEIAKRCSLTLVLGKPQLPAFPTPLVNGQRMTPE 346

Query: 309  NELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R  +  GL+ R   L      +      Y +RL+FEL  I +M F GYFLIV DFI 
Sbjct: 347  EYFRYASFEGLKERMVHLYPNEQEREAEMPRYVERLEFELGTILKMGFPGYFLIVGDFIN 406

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 407  WAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQT 466

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             R+ VI YV++KYG + V+QI TFG++ A+  +RDVGR L M Y+  D + KLIPN P  
Sbjct: 467  NRNLVIDYVKDKYGKDAVSQIATFGTMAARGVVRDVGRVLDMSYTFCDGISKLIPNKPGT 526

Query: 486  PVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             V+LQ              A   +    E    +  V  LLE+++KLEG+ R+   HA G
Sbjct: 527  NVTLQLPPTDGKKSDKYVYATEAEPILAEREAKEEDVKTLLEMARKLEGMTRNIGMHAGG 586

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F+ +
Sbjct: 587  VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAAEFIRK 646

Query: 592  RGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R    +      +P DD + Y L +   T  +FQ ES GM+  L   +P  +ED+IAL +
Sbjct: 647  RHPGQEKFAYENLPLDDPKVYKLFSEGKTEAVFQFESRGMQGMLRDAKPSRLEDLIALNA 706

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK+G+E++   HP +  ML ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 707  LYRPGPMDLIPSFVARKHGREQVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGYSLG 766

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAA 767
             AD+LRRAMGKK KEEMD+ +  F +GA K +GI +  A  +F+L+ KFA YGFNKSHAA
Sbjct: 767  GADLLRRAMGKKKKEEMDEHRGIFRAGAFKTHGIPEEKADEVFDLMEKFAGYGFNKSHAA 826

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AY++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA +  +   PP++N     
Sbjct: 827  AYSLLAYHTGWIKVHYTAEFFCANMTVEMDDTDKLKVLFEDAEKMGLSFEPPNINRGNYR 886

Query: 828  FK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD-------KPFDSLEDFCSRVDSKKLNR 879
            F+ + +  I Y L AIKG G      I+ A           PF SL DF  RVD  +LN+
Sbjct: 887  FEPISNKEIRYGLGAIKGTGEQAILAIVAAREGRGPTEEAGPFKSLFDFARRVDRTRLNK 946

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFS 935
            R +E+L+ AGA D    +R +L+ S+D  + +              +F      + G+ +
Sbjct: 947  RCVEALIKAGAFDTLHLNRAELVASMD--RAFEFAAASAANANQVGLFDMGGDDDHGSST 1004

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
             +  L +        R   E+  +GFY SGH  D     +RK   +  EE   +      
Sbjct: 1005 QEPDLVEVMPWGVKERLTQEKTAVGFYLSGHLFDEVATEVRKFAKRPIEELQDSREPQ-- 1062

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
             LA +V   +    ++G         + +   EA
Sbjct: 1063 LLAGIVTELRVINGQRGKL-ALFKLDDKSAMIEA 1095


>gi|326333480|ref|ZP_08199722.1| DNA polymerase III, alpha subunit [Nocardioidaceae bacterium Broad-1]
 gi|325948725|gb|EGD40823.1| DNA polymerase III, alpha subunit [Nocardioidaceae bacterium Broad-1]
          Length = 1194

 Score = 1006 bits (2601), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1073 (34%), Positives = 564/1073 (52%), Gaps = 59/1073 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA  L+ +  + +  + PAIA+TD  N+  A +F +KA A  ++P
Sbjct: 8    SFVHLHVHTEYSMLDGASLLDGLFKRTSELEMPAIAMTDHGNMHGAYDFWKKAKAHDVKP 67

Query: 70   IIGCQLD---IDMQDNLKMTNQGK-----------TPFPTVPSIVLLVSTAEGYQRLIEL 115
            IIG +        +   K    GK           +       + +     EG   L  L
Sbjct: 68   IIGIEAYITPNTPRSERKRVRWGKGDAAQEGGDDVSGGGAYTHMTMWAENTEGMHNLFRL 127

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             SR  L        R+    L E  ++G+I+ TG  SG I         + A K     +
Sbjct: 128  SSRSSLEG-YYFKPRMDKEILAE-HSKGIIVSTGCPSGAIQTRLRLGQWEEALKEAGELQ 185

Query: 176  KLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +F  D +++ L  H    ++     +++L  T  +  VATN+S + + ED  AH+ L+ 
Sbjct: 186  DIFGKDNVFLELMDHGISIEKRVRDDLLKLGKTMGIRPVATNDSHYNNPEDAGAHEALLC 245

Query: 234  VAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFI 284
            V   + +++                +Y+K+ +EM  ++   DL +A +NT+ IA RC   
Sbjct: 246  VQSGSRMTEPPYSKGGKRFAFEGSGYYIKSAAEMRELWGRQDLIDACDNTLLIAERCDVE 305

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                      ++ +      + EE+ LR +   G+E+R     +      Q+ + R++FE
Sbjct: 306  FTESTG---GYMARADIPEGETEESWLRKETWRGIELRYPGEKL-----TQEVKDRVEFE 357

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            ++VI +  + GYFL+VADFIQW+K N I +GPGRGSGAGS+ AYAL ITD+DPL   L F
Sbjct: 358  IDVILQKGYPGYFLVVADFIQWSKNNGIRIGPGRGSGAGSIVAYALKITDLDPLEHGLFF 417

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R SMPDFDIDF   RR E I+YV  KYG E+VAQI TFG ++AK A++D  R 
Sbjct: 418  ERFLNPERPSMPDFDIDFDDHRRGETIKYVTEKYGAEKVAQIATFGRIKAKQAIKDAARI 477

Query: 465  LQMPYSQVDRLCKLIPND-PAHPVSLQAI--------ADDSRFREARLADPSVDRLLEIS 515
            L   ++  DR+ K +P D     V L+ +         +   FR     DP V ++ E +
Sbjct: 478  LDHGFAIGDRITKALPPDVMGKGVPLKELFNPDHKRYGEGGDFRALHDTDPDVRKIYETA 537

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
              LEG  R    HAAG+++   P+  +VP+    +    VTQF     E  GL+K DFLG
Sbjct: 538  LGLEGQIRQTGIHAAGVIMASEPIIDIVPLMEPKQDGQVVTQFEYPTCEALGLVKMDFLG 597

Query: 576  LKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L  L  L+ +LD + A R + + L  +PFDD  TY L+    TLG+FQL+  GMR  L  
Sbjct: 598  LSNLHTLEDALDNIRANRDIDLVLEEVPFDDKPTYELMQRGDTLGVFQLDGGGMRALLRS 657

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGV 688
            M PD   DI A+ +LYRPGP+  D+   Y +RKNG+E IV IHP ++     +L ET G+
Sbjct: 658  MLPDRFADITAVSALYRPGPMGADSHNKYAHRKNGREPIVPIHPELEEPLAEVLGETYGL 717

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQVM IAQ+L+G+SL +AD LRRAMGKK K E+DKQ   F +G  + G S++    
Sbjct: 718  IVYQEQVMSIAQVLAGFSLGQADNLRRAMGKKKKAELDKQYAGFQAGMLERGYSQSAIDT 777

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            I+E+L  F+DY FNKSH+AAY V++Y TA++K +YP E++AA +T   ++ +K+  +  +
Sbjct: 778  IWEILLPFSDYAFNKSHSAAYGVVTYWTAYLKANYPTEYMAALLTSVKNDKDKMAIYLNE 837

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLED 867
             R+  I ++PP VN    DF      I + L A++ VG      I+EA  +   F+   D
Sbjct: 838  CRRMKIAVLPPDVNESSHDFTAVGTDIRFGLTAVRNVGAQVVDGIVEARTSKGRFEDFND 897

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F ++V  +  N+RV+ESL+ AGA D   + R  L+   +        +++N     +++F
Sbjct: 898  FLAKVPDRVCNKRVIESLIKAGAFDDMKHLRRSLVAIHETAVDQYVDIKRNEAIGQDSLF 957

Query: 928  AHEKG----TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                      F   + + +    +      +E+ +LG Y S HPL   + +L        
Sbjct: 958  GGLDDGDGVEFGVSVAIPEMDEWDKMTLLGHEREMLGLYVSDHPLMGLEHVLANGTDCTI 1017

Query: 984  EESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + +   +    + + ++ +V +  ++ T+KG     VT  +     E   FP
Sbjct: 1018 GQLMTDESRPHNSTVTVSGLVTNVNRRITKKGDAWATVTLEDLEGSVEVLLFP 1070


>gi|225076963|ref|ZP_03720162.1| hypothetical protein NEIFLAOT_02015 [Neisseria flavescens
            NRL30031/H210]
 gi|224951716|gb|EEG32925.1| hypothetical protein NEIFLAOT_02015 [Neisseria flavescens
            NRL30031/H210]
          Length = 1144

 Score = 1006 bits (2601), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1034 (38%), Positives = 578/1034 (55%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKTCRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            PI    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PIGAADVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P   TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PCDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDYLIKLSNEGLQERMVQLYPDEAERAVKMPEYQKRLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+ L  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + D +       +D+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKNTTGDIIDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYCFTPYPNMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VRLVDTPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQIEIMV 1014


>gi|261401655|ref|ZP_05987780.1| DNA polymerase III, alpha subunit [Neisseria lactamica ATCC 23970]
 gi|269208234|gb|EEZ74689.1| DNA polymerase III, alpha subunit [Neisseria lactamica ATCC 23970]
          Length = 1144

 Score = 1006 bits (2601), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1034 (38%), Positives = 582/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            P+    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PVGAADVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTEAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++  D+L KLIP 
Sbjct: 410  FCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPL 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+SL  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       VD+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKSTTGDIVDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    + +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLVDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   + ++     +        +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVCQIAPTKLDRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQVEIMV 1014


>gi|320457804|dbj|BAJ68425.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp.
            infantis ATCC 15697]
          Length = 1177

 Score = 1006 bits (2601), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/1063 (32%), Positives = 546/1063 (51%), Gaps = 56/1063 (5%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++PIIG 
Sbjct: 3    LHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKPIIGI 62

Query: 74   QLDIDMQ------DNLKMTNQGKTPFPT-----VPSIVLLVSTAEGYQRLIELVSRMYLL 122
            +  +  +        +    + +          +  + +     EG   LI+  S   L 
Sbjct: 63   EAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSVANLE 122

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDR 181
             +  +  R+    L    ++G+I  +G  SG I           A +    F+ +F  D 
Sbjct: 123  GRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFGKDN 181

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ L  H    +      ++ +A     PL+ATN+S ++  ED +A D ++ +   + +
Sbjct: 182  FFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSGSRL 241

Query: 241  SQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP--ILPRFIE 297
               DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H     +P+F  
Sbjct: 242  DDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMPKFPC 301

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E  D    E +    K   GLE R        G    D  ++ D+E  VI +M+F GYF
Sbjct: 302  PEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFCGYF 351

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+S+PD
Sbjct: 352  LVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLPD 411

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  +++ K
Sbjct: 412  IDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKVTK 471

Query: 478  LIPN--DPAHPVSL--------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
             +P        +SL        +  A+   FRE   +DP   R+ E ++ +EGL R    
Sbjct: 472  ALPPAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLIRQTGV 531

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  LT++  +L 
Sbjct: 532  HACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIHDTLK 590

Query: 588  FL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             + A     +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++PD   DI AL
Sbjct: 591  NIVANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFNDISAL 650

Query: 647  VSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVMQIAQ 700
            ++LYRPGP+  D+   Y  RKNG +KI  IHP ++     +L ET G+IIYQEQV   A+
Sbjct: 651  IALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAAR 710

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  ++++L  F+ Y 
Sbjct: 711  ILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPFSGYA 770

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  IQ++ P 
Sbjct: 771  FNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSPD 830

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKLN 878
            VN    ++    + + + L AI+ VG      I+         F +  DF  RV    LN
Sbjct: 831  VNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTALN 890

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK- 937
            RR++ESL+ AGA D    +R  L    +        +++ +     ++F+  +   ++  
Sbjct: 891  RRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGGAEAM 950

Query: 938  ----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-- 991
                +T+      +   +   E+ +LG Y S HPL   + IL  +        V   R  
Sbjct: 951  GDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDRARTM 1010

Query: 992  --GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1011 GEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSVQCMFF 1053


>gi|116667751|pdb|2HNH|A Chain A, Crystal Structure Of The Catalytic Alpha Subunit Of E.
           Coli Replicative Dna Polymerase Iii
          Length = 910

 Score = 1006 bits (2601), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/926 (43%), Positives = 571/926 (61%), Gaps = 36/926 (3%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2   SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62  IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246 P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
           P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287 -STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
           DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
             P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
           D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657 NIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
           + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
           AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
           A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830 VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQ 913
           +GA D  G  R  L+ SL +  K A 
Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAAD 910


>gi|320107146|ref|YP_004182736.1| DNA polymerase III subunit alpha [Terriglobus saanensis SP1PR4]
 gi|319925667|gb|ADV82742.1| DNA polymerase III, alpha subunit [Terriglobus saanensis SP1PR4]
          Length = 1173

 Score = 1006 bits (2601), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1062 (37%), Positives = 603/1062 (56%), Gaps = 51/1062 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  F HL +H+ YSLL+GA  ++ +   +    Q A A+TD  N++ A+ F       G+
Sbjct: 2    AAEFTHLHLHTDYSLLDGACDVDKLAAHLKKTGQTAAAMTDHGNIYGAVHFFDAMEKKGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+GC+L       L  T   +         ++L    EGY+ L+ L S   L +   +
Sbjct: 62   KPILGCELY------LSKTADHREMADGYNHFLVLAENEEGYKNLVRLTSEASL-NGFYR 114

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
              R+   +L +  TEGLI  +G  +G +++    +  + A+K    F ++F  +  ++ +
Sbjct: 115  KPRVSKEFLSK-HTEGLIGFSGCLAGEVNQHLMGDRYEEAKKSAGMFSEMFGKNNFFLEI 173

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    D+     + ++     +PL+ATN+S ++  +D  AH++L+ V  +  ++  +R
Sbjct: 174  QDHGLEPDKKVCDALFKMEKELGIPLIATNDSHYVEADDSRAHEILLCVQTAGSMNDPNR 233

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R  T + Y+K   EM   F+  PE    T++   RC+  +Q      P F   E   + 
Sbjct: 234  FRFDTQEFYIKTAEEMHRTFAHAPEVCTRTMQFIDRCNLKMQKVKDPFPAFPVPEGMTL- 292

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHA------QDYRQRLDFELNVIARMKFSGYFL 358
               E+        GL+ RL                  +Y +RL+ EL  I +MKF GYF+
Sbjct: 293  ---ESYFEEICRKGLKKRLETSVAHLRERGLLRKTISEYEERLNTELACIKQMKFPGYFM 349

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI++A++ NIPVGPGRGS AGS+ AY + ITDIDPL+  LLFERFLNP+R+SMPD 
Sbjct: 350  IVWDFIRYAREQNIPVGPGRGSAAGSLVAYVMEITDIDPLQHELLFERFLNPERVSMPDI 409

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC +RR+EVI YV+ KYG+++VAQIITF ++ AKAA++DVGRAL MPY +VDR+ K+
Sbjct: 410  DIDFCMNRREEVIEYVKRKYGNDQVAQIITFNTMAAKAAIKDVGRALDMPYGEVDRIAKM 469

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP      +  QA+ D +   +A  +DP +  L++ +Q+LEGL R A  HAAG+VI  +P
Sbjct: 470  IPATIGISIE-QAMKDSTALGQAYDSDPRIKELIDAAQRLEGLVRGAGVHAAGVVIAPQP 528

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597
            L++LVP+ R  + +  VT ++MK I+K GL+K DFLGL TLT++   L  +   RGV+VD
Sbjct: 529  LTELVPVTRA-KGEGIVTAYDMKAIDKMGLLKMDFLGLTTLTVIDDCLKLIKLNRGVEVD 587

Query: 598  LSLIPFDDHETYHL-LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            ++ IP DD  T+        T G+FQ ES GMR  L   +P  IED+ AL +LYRPGPI 
Sbjct: 588  MATIPLDDAVTFEKVFHRALTSGVFQFESGGMRDVLRRYKPTSIEDLTALNALYRPGPIQ 647

Query: 657  NIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
              +   +  RK G+  +  I P ++ +L+ET GVI+YQEQVMQI+ +++GYSL  AD+LR
Sbjct: 648  GGMIDDFIERKWGRRAVEYILPDLEGLLRETLGVIVYQEQVMQISSVIAGYSLGGADLLR 707

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ F+SGA+     K  A  +F+L+ +FA YGFNKSH+AAYA+++Y
Sbjct: 708  RAMGKKNAEEMAKQRDLFMSGAAAKKHPKDKAGQLFDLMEQFAGYGFNKSHSAAYALLAY 767

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TA++KTHYPVEF+AA +T E    E + K+  + R+  I + PP V     +F    + 
Sbjct: 768  HTAYLKTHYPVEFMAALLTSETSKPENVVKYISECRELGITVQPPDVQISDANFTPAGDV 827

Query: 835  IYYSLAAIKGVGTTTARHIMEAS----ADKP--FDSLEDFCSRVDSKKLNRRVLESLVFA 888
            I + L AIK VG      I++A     A+    F SL DFC +V+ K LN+RV ESL+ A
Sbjct: 828  IRFGLTAIKNVGGNAIECIIKARRELQAEGKTGFTSLWDFCEKVELKLLNKRVFESLIKA 887

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSV 945
            GA+D FG  R ++  ++D   + AQ  +++       +F          S +  L + + 
Sbjct: 888  GAMDSFGP-RARVFVAVDGAMERAQKSQRDAAAGQHGLFGIFDSGPTDVSPQDDLPQVAE 946

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE-------ESVATIRG------ 992
             +   R +NE+ VLGF+ SGHP+D Y+  LR M +           E     RG      
Sbjct: 947  WDEHTRLQNEKEVLGFFVSGHPMDKYREKLRNMKVIAASVACEMKPEPQIFRRGGQQEPQ 1006

Query: 993  NNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
            N I++A ++   +  K+++ G         +   + +   FP
Sbjct: 1007 NEIQIAGVITGLKVAKSKRSGEMYAQACLEDTTGKIDLIAFP 1048


>gi|188992333|ref|YP_001904343.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv.
            campestris str. B100]
 gi|167734093|emb|CAP52299.1| DNA polymerase III alpha subunit [Xanthomonas campestris pv.
            campestris]
          Length = 1219

 Score = 1006 bits (2601), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1083 (38%), Positives = 606/1083 (55%), Gaps = 80/1083 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 24   STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNNL 83

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 84   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 131

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 132  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHAN-LFAL-AGRDSLAGRLFAEGRADLAEQQL 189

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 190  ADWQRVFGDGLHLELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFAAHEA 249

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   YLK+  EM ++F+D+P+A++NT+ +A+RC+  +++  
Sbjct: 250  RVCISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADVPDAIDNTLALAQRCNIEMRLGT 309

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E + +    ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 310  YFLPAYPVPEDETL----DSWIRSQSRDGLAARLEKNPIAPGKTRQDYVDRLEFELDTII 365

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 366  KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 425

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 426  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 485

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLY 522
              VD + KLIPN     +   A+ +            +    +  V  L++++++LE L 
Sbjct: 486  GLVDSVAKLIPNILGITLK-DAMGEGKDSEMASPELIQRYQVEDDVRDLMDLARQLEDLT 544

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PLS+  P++ +         PVTQF+   +E+ GL+KFDFLGL+T
Sbjct: 545  RNAGKHAGGVVIAPEPLSEFCPLFAEHDEGGRGKNPVTQFDKNDVEEVGLVKFDFLGLRT 604

Query: 579  LTLLQKSLDFLAQRGV-----KVDLSLIPFDDHETYHL-LTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  +  R        VD++ IP DD  TY     +  T  +FQ ESSGMR+ L
Sbjct: 605  LTIIDWAVKAINVRHARAGIDPVDITAIPLDDAPTYKGVFASGNTGAVFQFESSGMRRLL 664

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +N RK+G++ I+   P  + +LK+T G+++YQ
Sbjct: 665  KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQDIIYPDPRTEAILKDTYGIMVYQ 724

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 725  EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAQKADEIFDL 784

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 785  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 844

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             + ++PP VN     F+        Y L AIKGVG      I+E    + P+ +L DFC+
Sbjct: 845  GLTVLPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERLRNGPYTTLLDFCT 904

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 905  RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 964

Query: 931  KGTFSDK-ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE----- 984
              +     + L +            E+  LGFY SGHP D ++  +R++           
Sbjct: 965  DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVRELVGCDLSALDKI 1024

Query: 985  ---------------ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                           E  A     +  LA  VV  ++    KG    +V   +     E 
Sbjct: 1025 LASQQRGGGGGGGDGEKRAWRPEVSAILAGQVVGVRR----KGDSQVFVQLEDGRGRVEC 1080

Query: 1030 NFF 1032
            + F
Sbjct: 1081 SAF 1083


>gi|309389826|gb|ADO77706.1| DNA polymerase III, alpha subunit [Halanaerobium praevalens DSM 2228]
          Length = 1118

 Score = 1006 bits (2601), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1033 (35%), Positives = 594/1033 (57%), Gaps = 35/1033 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  H+++SLL+GA  ++++++K    + PA AITD   L+  ++F +KA   GI+P
Sbjct: 3    NFVHLHNHTAFSLLDGATRIDSLIEKTKKYEMPAAAITDHGVLYGMIDFYRKAKKEGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +      +   +          ++LL    +GY  LI+LVS+ +L        
Sbjct: 63   IIGAELYLASGSRFEKNRKR-------YHLLLLAQNKQGYYNLIQLVSKAWLEG-FYYKP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L +  ++GLI L+    G I +        +A+K    ++ +F  +  ++ LQ 
Sbjct: 115  RVDKELLAKY-SDGLICLSACLQGEIPQLLIKGQYDLAQKAAADYRAIFGKNNFFLELQD 173

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    ++     +++L+    +P V TN+S +L++ED E  D+L+A+   T ++ ++R  
Sbjct: 174  HNLQKEKEVAQGLLKLSQAENIPTVITNDSHYLNQEDAELQDILLALQTGTTLADENRMT 233

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             T    Y K+  EM  +F +L  A +NTV+IA R    L  +   LP++ +   +   K 
Sbjct: 234  FTGQEFYYKSPKEMKKLFPELNSAYQNTVKIADRVELNLDFNHFYLPKYPDLGKE---KS 290

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E  L+     GL+ +               R+RL +ELN+I  M ++ YFLIV DF+++
Sbjct: 291  AEELLQKLCFEGLKAKEMDSDAKA-------RKRLKYELNIIFEMGYAAYFLIVYDFVKY 343

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ N I VGPGRGS AGS+ AY L IT ++PL++ L+FERFLNP+R++MPD DIDF  + 
Sbjct: 344  AEDNGIMVGPGRGSAAGSLVAYLLKITKVNPLKYGLIFERFLNPERVTMPDIDIDF-DEN 402

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD++I YV+ +YG ERVAQI TFG++ A+AA+RDVGR L +PY +VD++ KLI +     
Sbjct: 403  RDQIIEYVKKRYGKERVAQIGTFGTMAARAAIRDVGRVLALPYKKVDQVAKLISSRKGIK 462

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             SL++     + ++    D  +  L++ ++ +EGL RH STHAAG++IG  PL+Q+VP+ 
Sbjct: 463  ASLKS---QEKLQQLYQRDSQIKELIDYARGVEGLPRHISTHAAGVIIGAEPLAQIVPLQ 519

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
            +  +S   +TQ  M  +E  GL+K DFLGL+ LT+++  L  +   +G K+D+  IP  D
Sbjct: 520  KQDQS--VITQLPMGDLEALGLLKMDFLGLRNLTVIKNCLQLIEKHKGKKIDIDNIPLTD 577

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNN 663
             + Y  L+T  T G+FQ+ES   +   + M+P+   D+IA+++L RPGP+ +  +  +  
Sbjct: 578  KDVYDFLSTGKTAGVFQMESYLFQSLNKKMKPEKFNDLIAMLALGRPGPLGSNIVDDFIA 637

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             ++GK++   +HP + P+L+ET G+I+YQEQVM+IA  L+GYS+ EAD+LRR MGKK  +
Sbjct: 638  IRHGKKEAEYLHPKLKPILEETFGMILYQEQVMEIASSLAGYSMGEADLLRRGMGKKKLK 697

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  ++E+F+ GA   GI + IA  IF+ +  FA YGFNKSH+ AYA ++YQTA++K HY
Sbjct: 698  LVAAEREKFVKGAVARGIQENIAQKIFDQMEYFAGYGFNKSHSTAYAFLAYQTAYLKYHY 757

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAI 842
            P EF+AA  +  M N +KI  +     +  ++I+PP +N    +F    DN I Y L AI
Sbjct: 758  PAEFMAALFSSVMGNQDKIADYINSLAEIGLKIIPPDINRSDHNFTAANDNEILYGLKAI 817

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            K VG+     +++A   + F SL DF  RVD  ++N + LE+ V AGA D    +R  LL
Sbjct: 818  KNVGSAAIEAVIKARKSEKFKSLVDFLKRVDISQINIQSLEAFVKAGAFDEIAVNRASLL 877

Query: 903  QSLDNIQKYAQWVEKNRTNKHEN---IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
             + + +      + KNR    ++   +F  +       +  +K     +    E E+  L
Sbjct: 878  LNYEELYNKYNNLAKNRAQGQQSFAELFEDQNKFMQTDLKYQKVDELKTETILEQEKEFL 937

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G Y S HPLD Y+  L K+      +++    G  +  AA + + ++  T++ +++ ++T
Sbjct: 938  GIYISAHPLDQYQAKLDKINFYSINKALTVDSGKKVLTAAYLSNYKEHITKRKNKMAFLT 997

Query: 1020 FSEPAKEYEANFF 1032
             S+   + E   F
Sbjct: 998  VSDHQDKMEVIVF 1010


>gi|310779267|ref|YP_003967600.1| DNA polymerase III catalytic subunit, DnaE type [Ilyobacter
            polytropus DSM 2926]
 gi|309748590|gb|ADO83252.1| DNA polymerase III catalytic subunit, DnaE type [Ilyobacter
            polytropus DSM 2926]
          Length = 1138

 Score = 1006 bits (2600), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1033 (37%), Positives = 609/1033 (58%), Gaps = 32/1033 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSLL+G   ++  LD+       ++AITD  N+F A+EF +KA + GI+P
Sbjct: 4    NFVHLHLHTEYSLLDGVGKIDEYLDRAKKLGMRSMAITDHGNMFGAVEFYKKALSKGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +          M  +    F     +VLL     GY+ L++L S  YL        
Sbjct: 64   IVGME---AYLSEFSMEEKSGRNF----HLVLLAKNETGYKNLMKLSSEAYLKG-FYYRP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRLYVNLQ 187
            RI    L +  ++G+I L+    G + +      S+   +K +  + ++F  +  YV LQ
Sbjct: 116  RIDKEILAQ-HSKGIIALSACMQGELSKRILDEESEEDLDKAVNEYVEIFGKEDFYVELQ 174

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +    + +    +  LA  H+L +VATN++ ++   D+   D+L+ V   + +S + R 
Sbjct: 175  SNGIKKQEKLNDALYTLAKKHDLKVVATNDTHYVYYGDHTLQDILICVQTGSKISDEKRM 234

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            ++  D  +LK+R +M+        A++NTVEIA +C+  L+      P +    C D  +
Sbjct: 235  KIETDQLFLKSREQMLEELGKYDRAVDNTVEIADKCNLELEFGVFKFPEYKIPTCVDSIR 294

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            E    LR     GL+ R       K    +D  +R+++EL+VI +M ++GYF++V DFI 
Sbjct: 295  E---FLRKLVYQGLKRRY------KNDLEKDVIERVEYELDVINKMDYAGYFVVVWDFID 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AKKN IPVGPGRGS AGS+ AY+L IT++DP++++L+FERFLNP+R+SMPD DID CQ+
Sbjct: 346  YAKKNRIPVGPGRGSAAGSMVAYSLGITELDPMKYNLIFERFLNPERISMPDIDIDICQE 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV  KYG +RVAQIITFG+++A+AA+RDVGR + +P  +VD++ KLIP   + 
Sbjct: 406  RRQEVIDYVGEKYGKDRVAQIITFGTMKARAAIRDVGRVMNVPLFKVDKIAKLIPPFFSL 465

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                +A+ +    RE    D     L+E S++LE   RHAS HAAG+VI   PL+  VP+
Sbjct: 466  D---RALKEVEELREVYETDSESQELIEYSKRLENTVRHASIHAAGVVITKDPLTDDVPL 522

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
            Y D ++ +  TQ+ MK +E+ GL+K DFLGL+ LT+LQ+++D++ +    ++DL+ IP D
Sbjct: 523  YSDTKTKVVSTQYQMKELEELGLLKMDFLGLRNLTILQRTVDYIREDTNEEIDLNKIPLD 582

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
              E Y LL    TLG+FQLES G+R+ L  ++PD  EDIIA+++LYRPGP+ + +V  + 
Sbjct: 583  SLEVYRLLQKGDTLGVFQLESHGIRKLLMKLKPDRFEDIIAVLALYRPGPLGSGMVDDFI 642

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              KNG+  I   H  ++ +LKET GVI+YQEQVM+IA +++ Y+L EAD+LRRAMGKK  
Sbjct: 643  EVKNGRAAIKYPHQSLEDVLKETYGVILYQEQVMKIANIMADYTLGEADLLRRAMGKKNM 702

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              M++ + +F+  A K G S+  A  IF L+ KFA YGFNKSH+AAYA+++Y TA+ K  
Sbjct: 703  AIMEENRNKFVKRAVKKGYSEEKATEIFNLIDKFAGYGFNKSHSAAYALVAYWTAYFKGC 762

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP  + AA MT E +N+EK+  + +DA++  I +  P++N     F V  + + + ++AI
Sbjct: 763  YPKHYYAALMTSERNNIEKLAVYVEDAKEHGIGVALPNINKISTRFIVDGDLVRFGMSAI 822

Query: 843  KGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K VG T    I  E + +  + + E+F +R   + +N++ LE+L+ +GALD    +R Q 
Sbjct: 823  KNVGETLIERIKAEHARNGDYTTFENFVTRGKKEGVNKKALEALILSGALDSIPGNRRQK 882

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             +S++    YA  V K    +  N+F   + T  +K  +              E+  LGF
Sbjct: 883  YESMEKALNYATKVMKEDDIQQMNLFGEARATI-EKFQMPSVEEYKMENLLTGEKEFLGF 941

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTF 1020
            YF+GHPLD Y+ +L+   +   ++ V+ +   +I+   MV + ++  T+K G  +G    
Sbjct: 942  YFTGHPLDKYRQMLKVYRLTEIKDIVSDMP-VHIKTYGMVRNLKKVITKKSGQVMGVFDL 1000

Query: 1021 SEPAKEYEANFFP 1033
             +      A  FP
Sbjct: 1001 EDYYGRIGAVVFP 1013


>gi|256544919|ref|ZP_05472290.1| DNA polymerase III alpha subunit [Anaerococcus vaginalis ATCC 51170]
 gi|256399418|gb|EEU13024.1| DNA polymerase III alpha subunit [Anaerococcus vaginalis ATCC 51170]
          Length = 1149

 Score = 1006 bits (2600), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1052 (34%), Positives = 571/1052 (54%), Gaps = 47/1052 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL +H+ YSLL+G   ++ +++K+      + AITD  N++  +EF +K  A  I+P
Sbjct: 4    NFTHLHLHTEYSLLDGFTKIDKLMEKLKEFGMDSCAITDHGNMYGVIEFYKKCQANNIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ I   D    T Q K        ++LL     GY+ L+++VS+ Y         
Sbjct: 64   IIGCEVYICENDYKIKTPQNKR----YYHLILLAKNNNGYKNLLKIVSKAYTQG-YYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI    L+E   E LI L+   +G I++    N  + A      +  LF  +  Y+ +Q 
Sbjct: 119  RIDFEVLKEY-KEDLIGLSACLNGEINQRILENDIKKAYSTAKKYLDLFGKENFYLEVQY 177

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ + ++ ++++    ++ LV TN+  ++ + D    DVL  +   +++  ++R +
Sbjct: 178  HGLKEQKKVNEVLLRIHKDLDIELVCTNDVHYVEKNDAFYQDVLSCIQTGSLLEDENRMK 237

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +  D  YLK+   M  IF + P A ENT +I+  C+  L+ H P LP F +   D    E
Sbjct: 238  MPVDEFYLKDSQMMEEIFKEFPRAFENTQKISAMCNVSLEFHNPHLPYFTKLPKDTTNLE 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+     GL  +            +   +R   E++VI  M +  YFLIV DF+++
Sbjct: 298  ---YLKILVKEGLIKKYKN-------LDEKIIKRAKKEIDVINNMGYVDYFLIVWDFVKY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N I VGPGRGS AGS+ +YAL IT IDPL++ LLFERFLNP+R+SMPD DIDFC + 
Sbjct: 348  AKDNKIAVGPGRGSAAGSIVSYALDITQIDPLKYDLLFERFLNPERVSMPDIDIDFCYEN 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD+V+ YV   YG + V+QI+TFG +QA+ A+RDVGR + + Y++VD++ KLIP      
Sbjct: 408  RDKVVEYVYELYGRDHVSQIVTFGRMQARNAIRDVGRVMNISYNKVDKIAKLIPQAIGMT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+    +       D    R+++ ++ +E L RH S HAAG+VI    L+ +VP+ 
Sbjct: 468  ID-KALDSTEKLAYEYQNDVETKRMIDTARNIEALPRHTSIHAAGVVISKEILTDIVPL- 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
              + +D  VTQFNM  IE+ GL+K DFLGL+ LT++Q ++  + + + +++DL  I  +D
Sbjct: 526  -ALSNDQIVTQFNMTEIEELGLLKMDFLGLRNLTVIQDTIKDIKKNKNIEIDLGAIDEND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +     T   T+GIFQ ES+GMR  L+ ++P   +D++A  SL+RPGP+D I  Y   K
Sbjct: 585  PKVISQFTKAETVGIFQFESAGMRNFLKNLKPTRFDDLVAANSLFRPGPMDQIPNYIKNK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
               + I  I   + P+L+ T G+I+YQEQVMQI Q L+G+SL EAD LRRAM KK    M
Sbjct: 645  INPQNISYIDDALKPILEVTYGIIVYQEQVMQIVQKLAGFSLGEADNLRRAMSKKKMSVM 704

Query: 726  DKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            +  +E F+             G   NGIS+  A  I++ +  FA Y FNKSH+AAY++++
Sbjct: 705  EANREIFVHGKKNQNGEYEVIGCVNNGISEINANKIYDEMISFAKYAFNKSHSAAYSLVA 764

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
             QTA++K ++  E++A  +T  M N  K+  +  +A++  I+I+PP++N     F   +N
Sbjct: 765  IQTAFLKYYFKEEYMANLLTSIMGNSSKVYLYISEAKRLGIKIVPPNINKSKRRFIASEN 824

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890
             I + L+AIK VG      I+    +K F S +DF  R+   D   LN++ LESL+ AG 
Sbjct: 825  EIVFGLSAIKNVGENLIDLIVNLRKEKNFKSFKDFLERIEANDPTVLNKKALESLIKAGV 884

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKFSVENS 948
             DC GY R +L+   +   +     EK       N+  F   K    D I     +   +
Sbjct: 885  FDCMGYKRSELMAVHETALQSIHDNEKVNLKGQMNLLDFDQNKEEIIDDIKFPPVNEYKN 944

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-------RGNNIRLAAMV 1001
              + + E+ VLGFY S HPL+     L+       E                ++R+A ++
Sbjct: 945  KQKLKLEKEVLGFYISDHPLNSLGNNLKNYVNFTTEILSELRPVDLDKFDNKSVRMAGII 1004

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +K +  T+K + + + +  + +   +   FP
Sbjct: 1005 TNKSETMTKKSTLMAFCSLEDMSGSIDMIIFP 1036


>gi|325131475|gb|EGC54182.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M6190]
 gi|325137580|gb|EGC60161.1| DNA polymerase III, alpha subunit [Neisseria meningitidis ES14902]
          Length = 1144

 Score = 1006 bits (2600), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1034 (38%), Positives = 581/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            P+    + I   D                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PVGAADVWIGNPDAPDK----------PFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+L     LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLVEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDYLIKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+ L  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       +D+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIIDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   +R++  +   +       +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQVEIMV 1014


>gi|309378417|emb|CBX22970.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 1144

 Score = 1006 bits (2600), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1034 (38%), Positives = 583/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            P+    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PVGAADVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTEAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++  D+L KLIP 
Sbjct: 410  FCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPL 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+SL  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       VD+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIVDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+ K   IHPL++ +L  T G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQ-KFQYIHPLLEGILDPTYGIMVYQEQVMQVAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    + +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLVDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   + ++     +        +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVCQIAPTKLDRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQVEIMV 1014


>gi|157165237|ref|YP_001467325.1| DNA polymerase III subunit alpha [Campylobacter concisus 13826]
 gi|112801857|gb|EAT99201.1| DNA polymerase III subunit alpha [Campylobacter concisus 13826]
          Length = 1203

 Score = 1005 bits (2599), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1064 (35%), Positives = 600/1064 (56%), Gaps = 47/1064 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++  F HL +H+ YSLL+GA  +  +   +      A AITD  N+F A++F +K   
Sbjct: 1    MSENSGFTHLHLHTEYSLLDGANKIEELAHTLHDRGDTAAAITDHGNMFGAIDFYKKMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+P+IG +  +   + L               ++L+     GY+ L+ L S  Y+   
Sbjct: 61   NGIKPLIGIEAYVHNGEQL-----DDKSTKQRFHLILIAKNETGYKNLMYLSSMSYIEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA---------FFFNSSQVAEKRLLTFK 175
                 RI    L+E  +EGL+  +    G +            F     + A++  L +K
Sbjct: 115  FYYYPRINKKILKE-HSEGLVCSSACLQGEVSWHLNLSERNVKFGAKGYERAKEVALEYK 173

Query: 176  KLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            ++FGD  Y+ + RH   D+ R +  ++++A    + ++ATN++ +  +E   AH+V M +
Sbjct: 174  EIFGDDFYLEIMRHGIGDQRRIDDDILRIAKETGIKVIATNDTHYTFKERAAAHEVFMCI 233

Query: 235  AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            A +  +   +R R +  + ++K++ +M  +F D+PE +ENT EI  +C+  +++  P  P
Sbjct: 234  AMNKTLDDPNRLRHSVHEFFVKSKEQMNELFLDIPEVIENTQEIVDKCNLEIKLGNPTPP 293

Query: 294  RF--------------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
             F               E E     K +     ++   GLE RL           ++YR+
Sbjct: 294  NFKFTLECAKERNLTLPEPENRYSFKNDAVFFEHECRKGLEERLK---FVPENLHEEYRK 350

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL+ E+++I +M F GY +IV DFI  AK+  +PVGPGRGS AGS+ AY+L ITD+DP+ 
Sbjct: 351  RLEIEISIINKMNFPGYMMIVWDFINEAKRRGVPVGPGRGSAAGSLVAYSLKITDLDPIP 410

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            ++LLFERFLNP+R+SMPD D+DFCQ RR E+I YV  KYG   VA +ITFG L AK  +R
Sbjct: 411  YNLLFERFLNPERVSMPDIDVDFCQSRRGEIIDYVTQKYGKFNVAGVITFGKLLAKGVIR 470

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            DV R   MPY++ D + KLIP++    +   A   + +  E    +P   ++ + +  LE
Sbjct: 471  DVARVCDMPYAEADAMAKLIPDELNITLK-DAYDKEPKIAELISQNPKAAKIWKFALDLE 529

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS--DLPVTQFNMKWIEKAGLIKFDFLGLK 577
            GL R+A  HAAG+VI +  L    P++R   S  D  VTQ+++K++E   LIKFDFLGLK
Sbjct: 530  GLNRNAGQHAAGVVISNEELWNKTPLFRQPNSPEDRFVTQYSLKYLEDVDLIKFDFLGLK 589

Query: 578  TLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            TLT++  ++  + QR   ++    +  +D   Y ++ +   +GIFQ+E  GMR+    ++
Sbjct: 590  TLTVIDNAIKLVKQRTGREIVWEQVDKNDSGVYKMIQSGQAIGIFQIEGEGMRKLGTSLR 649

Query: 637  PDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
            PDC EDI+A+++LYRPGP+++ +   +  RK+G+ +I      ++P+L  T GVI+YQEQ
Sbjct: 650  PDCFEDIVAMLALYRPGPMESGMLDDFVKRKHGEAEITYAFKELEPILAPTYGVIVYQEQ 709

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VMQI Q + G+SL  AD++RRAMGKKIKEEMD+ K  F+ GA   G++   A ++FEL+ 
Sbjct: 710  VMQIVQAIGGFSLGGADLVRRAMGKKIKEEMDRLKGEFVKGAEAKGLNGQKADDLFELIV 769

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
            KFA YGFNKSH+AAYA +++QTA++K +YP EF+AA +T E  NV+KI ++  + ++ NI
Sbjct: 770  KFAGYGFNKSHSAAYAYVTFQTAYLKAYYPAEFMAALLTSEESNVDKIVRYIDEIKRINI 829

Query: 815  QIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFC 869
              +PPS+N    +F V      + I + L AIKGVG     +I+    A   F S++DF 
Sbjct: 830  DTLPPSINKSTKEFSVVKNGEHDGIIFGLGAIKGVGGAAIENIIAERDAKGEFKSMDDFV 889

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            SR+D  K+N++V ESL+ AG  D FG+SR  LLQ+++NI +  +   + R N  E++F  
Sbjct: 890  SRIDPFKVNKKVFESLIKAGCFDEFGFSRKMLLQNVENIVEACKNAAQIRKNAAESLFGE 949

Query: 930  EKGTFSDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
            +      KI     + E +     + EQ  +G Y SGHPLD YK  + K+      E  +
Sbjct: 950  DDSMNDVKINFVTINDEFDIKQILKFEQESVGIYLSGHPLDDYKDEINKIKYTLSSEFES 1009

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +   I +   +     + T+ G ++G +   +     E   F
Sbjct: 1010 LPQSAEILVVGKIEDFSTRITKSGKKMGTINVLDFHGNIEIAVF 1053


>gi|325929585|ref|ZP_08190699.1| DNA polymerase III, alpha subunit [Xanthomonas perforans 91-118]
 gi|325540095|gb|EGD11723.1| DNA polymerase III, alpha subunit [Xanthomonas perforans 91-118]
          Length = 1196

 Score = 1005 bits (2599), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1083 (38%), Positives = 604/1083 (55%), Gaps = 80/1083 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHAN-LFAL-AGRDSLAGRLFNEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   Y+K+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPREYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E + +    ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPEDETL----DSWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLY 522
              VD + KLIPN     +   A+ +            +    +  V  L++++++LE L 
Sbjct: 464  GLVDSVAKLIPNILGITLK-DAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523  RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+T
Sbjct: 523  RNAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582

Query: 579  LTLLQKSLDFLAQRGV-----KVDLSLIPFDDHETYHL-LTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  +  R        VD++ IP DD  TY     +  T  +FQ ESSGMR+ L
Sbjct: 583  LTIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQ
Sbjct: 643  KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQ 702

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703  EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             + + PP VN     F+        Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 823  GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883  RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 931  KGTFSDK-ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------ 983
              +     + L +            E+  LGFY SGHP D ++  +R++           
Sbjct: 943  DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKI 1002

Query: 984  --------------EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                           E  A     +  LA  VV  ++    KG    +V   +     E 
Sbjct: 1003 LASQQRGGGGGGGDGEKRAWRPEVSAILAGQVVGVRR----KGDSQVFVQLEDGRGRVEC 1058

Query: 1030 NFF 1032
            + F
Sbjct: 1059 SAF 1061


>gi|295112106|emb|CBL28856.1| DNA-directed DNA polymerase III (polc) [Synergistetes bacterium SGP1]
          Length = 1154

 Score = 1005 bits (2599), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1047 (36%), Positives = 601/1047 (57%), Gaps = 44/1047 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YSLL+GA+    +  K+A    PA+A+TD   ++ A+EF +   AAG++P
Sbjct: 4    PFVHLHVHTEYSLLDGAIRTKQLAAKVADWSVPAVAMTDHGVMYGAVEFYENCRAAGVKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +D   +     +GK        ++LL    EGY+ L++LVS     D      
Sbjct: 64   ILGCEIYVDPDGHRSREKKGKNN-----HLILLAENEEGYRNLVKLVSIANT-DGFYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI    L      G+I  +   +G + +         A KR L ++ +      ++ +  
Sbjct: 118  RIDHDLLASCAR-GIIASSACLAGEVPQLVLQGREDEAAKRALLYQDIMGKGNYFLEIMS 176

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++      ++++A    +PL+AT+++ +L+ EDYE H +L+ +      +      
Sbjct: 177  NTLPEQAVVNKALIRIAKDTGIPLIATSDAHYLNAEDYEWHKILLRINTHADDTDDAFGF 236

Query: 248  VTPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFI--LQVHAPILPRFIEKECDDIQ 304
               D YL++  EM +IF +++PEAL+NTV IA RC     L+    +LP    +E   + 
Sbjct: 237  SVNDFYLRSPEEMDAIFGAEVPEALDNTVAIAERCGVEMKLKTGHYMLPSLELQEGMTL- 295

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               ++ L ++A AGL +RL            +Y +RL++ELNVI RM FS YFLIVA  I
Sbjct: 296  ---DSHLEDEARAGLRMRLNADTP-----PAEYAERLEYELNVITRMGFSAYFLIVAGII 347

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            Q AK+  IP+GPGRGS AGS+ A++L IT++DPL+++LLFERFLNP+R+SMPD D D   
Sbjct: 348  QAAKERGIPIGPGRGSAAGSLVAWSLRITELDPLKYNLLFERFLNPERISMPDIDTDVSD 407

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
              R+++++++  +YG +RV+QIITFG ++++ A++DVGRA+ M Y+ +DR+ KLIP D  
Sbjct: 408  RGREQLLKHIVERYGSDRVSQIITFGRMKSRQAVKDVGRAVGMEYALMDRVAKLIPADAR 467

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 +A+       E    DP +  +L  ++ +EGL RHAS HAAG+VI   P++ LVP
Sbjct: 468  SIR--EALERTPELTELAEEDPRIKNVLRTAEHIEGLARHASQHAAGVVITPVPITDLVP 525

Query: 545  MYR-------DVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            + R           +L     VTQF M+ +EK GL+K DFLGL+TL++L+++++ +   G
Sbjct: 526  IRRIKSTAPSAPDGELDVTQTVTQFTMEPVEKLGLVKMDFLGLQTLSILEEAVENIRLNG 585

Query: 594  VK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                DL  +P DD  TY LL    T+G+FQLES G+R  L  ++ DC +D++A +++YRP
Sbjct: 586  KNPPDLLSLPMDDPATYKLLQEADTMGVFQLESDGIRGMLRKLRIDCFDDLVAALAMYRP 645

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+D+ +V  Y   K+G+ K+   HPL++ +LK+T GVI+YQEQVMQ A +L+GY+L EA
Sbjct: 646  GPLDSGMVDQYIKCKHGQAKLEYPHPLLEDVLKDTYGVILYQEQVMQSASVLAGYTLGEA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  E M +Q+ +F+ GA + GI +  A  IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DLLRRAMGKKKVEVMQEQRAKFLDGARQKGIDEKTASGIFDLIEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEM-DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            ++SYQTA++K +Y  EF+A+ ++ +M    + +  + ++ RQ  I ++PP VN+    F 
Sbjct: 766  LVSYQTAYLKANYKAEFMASYLSSQMKSKKDVLGHYVREVRQSGISVLPPDVNSSMESFT 825

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
               + I + L A+  VG      I++A  + PF SL DF  RVD   +NR ++E+L+ AG
Sbjct: 826  AVGDVIRFGLGAVLRVGHNAVEAIVKAREEGPFKSLWDFLRRVDLHDMNRAMIENLIKAG 885

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVEN 947
            A D    +R +L+ +L +    AQ +         ++F    +      +  L       
Sbjct: 886  AFDEITPNRARLVAALPDFILAAQKMAAG--GDQLSLFDAIGDDSGSDPEPDLPDVEEYG 943

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQ 1006
               + + E+ V G Y SGHP D  +  +RK       +     RG    ++  +++S  +
Sbjct: 944  IYDKLDYEKEVTGLYISGHPFDSCEAQVRKYANCSIADL-PLWRGKTAPKVGGLILSVSE 1002

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+KG  +G +   +         FP
Sbjct: 1003 KTTKKGDLMGVLLLEDSESSVSMVAFP 1029


>gi|313677443|ref|YP_004055439.1| DNA polymerase iii, alpha subunit [Marivirga tractuosa DSM 4126]
 gi|312944141|gb|ADR23331.1| DNA polymerase III, alpha subunit [Marivirga tractuosa DSM 4126]
          Length = 1433

 Score = 1005 bits (2599), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1076 (32%), Positives = 562/1076 (52%), Gaps = 70/1076 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  H+ +S+L+    + ++++K      PAIA+TD  N+  A  F + A  AGI+P
Sbjct: 245  NFVHLHCHTQFSILQSTTEIPSMVNKAKEMGMPAIAMTDHGNMMGAYNFVRDANKAGIKP 304

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC+        L      K         VLL     GY  L +L S  ++        
Sbjct: 305  IVGCEYF------LTQDRNNKKNKDDGFQTVLLAKNKAGYHNLAKLSSIAFVEG-FYYVP 357

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +   E +I  TGG  G +           AE+  L +K+ FGD  YV L +H
Sbjct: 358  RIDREALVQY-KENIIATTGGLWGEVPFLILNAGEAQAEEAFLWWKEQFGDDFYVELNQH 416

Query: 190  RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
               +  + ++ +++ A  +++   A NN+ + ++ED EA D+L+ V       ++ +P+ 
Sbjct: 417  GVPEEQKVNEVLLKFAKKYDVKYFAANNTYYTNKEDAEAQDILLCVKDGETTGEQGKPKK 476

Query: 248  -------------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                            + Y+K+  EM  +F+D PEA+  T EIA +          +LP+
Sbjct: 477  YVGKRGREYRFGLPNDEFYIKSPDEMKKLFADYPEAIACTAEIAEKIEGFELARDVLLPK 536

Query: 295  FIEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
            +   +     K+ EN         LR+    G + R  +          + ++RLDFEL 
Sbjct: 537  YDIPQEFIDPKDAENGGNRGENAYLRHITYEGAKKRYPE-------ITAEIKERLDFELE 589

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
             I R  + GYFLIV DF   A++  + VGPGRGS AGS  AY   IT+IDP+++ LLFER
Sbjct: 590  TIERTGYPGYFLIVQDFTTAAREMGVSVGPGRGSAAGSAVAYCTAITNIDPIKYDLLFER 649

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNPDR+S+PD DIDF    R +VI YV  KYG  +VAQI T+G++ AK+A+RD  R ++
Sbjct: 650  FLNPDRVSLPDIDIDFDDHGRQKVIDYVIEKYGANQVAQITTYGTMAAKSAIRDTARVME 709

Query: 467  MPYSQVDRLCKLIPNDPAHPV----------------SLQAIADDSRFREARLADPSVDR 510
            +P    DR+ KL+P+     +                + +AI+          A+ +  +
Sbjct: 710  LPLMDADRIAKLVPDIKLKALFDLASDKKKLSAKLKNNGEAISKAEELLNLAKANDASAK 769

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            ++  ++ LEG  R+   HA G++I    +++ VP+     SD+  TQF+   +E AGL+K
Sbjct: 770  VINQARVLEGSVRNTGIHACGVIITPDDITKFVPVALAKDSDMYCTQFDNAVVENAGLLK 829

Query: 571  FDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             DFLGLKTLTL++ ++  + +R  VK+D    P DD +TY L     T+GIFQ ES GM+
Sbjct: 830  MDFLGLKTLTLIKDAVRIVEERHGVKLDPDEFPIDDPKTYELFQKGETVGIFQYESPGMQ 889

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
            + L  ++P    D+IA+ +LYRPGP++ I  +  RKNG E+I    P ++  L+ET G+ 
Sbjct: 890  KYLRDLKPTEFSDLIAMNALYRPGPLEYIPNFVKRKNGLEEISYDLPEMEEYLQETYGIT 949

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVM ++Q L+G++  EADVLR+AMGKKI   +++ K +FI+  ++ G  K +   I
Sbjct: 950  VYQEQVMLLSQKLAGFTKGEADVLRKAMGKKIFALLEELKPKFINQGAEKGHPKDVLEKI 1009

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++    FA Y FNKSH+  YA ++YQTA++K HYP E++A+ ++  M  +  +  F ++ 
Sbjct: 1010 WKDWEAFAAYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMASVLSNNMGQITDVTFFMEEC 1069

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLED 867
            ++  I+++ P VN     F V DN  I + LAAIKG G+     I++    +  +  + D
Sbjct: 1070 KRAGIEVLGPDVNESNSGFTVNDNGQIRFGLAAIKGAGSAAVESIIQERKSNGQYKDIFD 1129

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVEKNR 919
            F  R+  K +N++  ESL  AG  DCF  Y R Q L S       ++ I KYAQ ++  +
Sbjct: 1130 FAERIPLKSVNKKTFESLAMAGGFDCFKEYHRKQFLASDNGEGTLIEKIIKYAQKLQHEK 1189

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
             +   ++F  E G       + +    +   +   E+ V+G + SGHPLD Y+  +    
Sbjct: 1190 DSAQTSLFGGEGGVAIPPPRVAEMEPYSELEKLNIEKEVVGLFISGHPLDEYRFEMESFC 1249

Query: 980  IKGYEES---VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 E     +    N I++  +V +   ++T+ G   G +T  +    +   FF
Sbjct: 1250 NTQVSELNDIESLASKNEIKVGGIVTAVAHRQTKTGKPFGTLTLEDYGGSF--TFF 1303


>gi|329908024|ref|ZP_08274797.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
            IMCC9480]
 gi|327546808|gb|EGF31739.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
            IMCC9480]
          Length = 1177

 Score = 1005 bits (2599), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1042 (39%), Positives = 609/1042 (58%), Gaps = 37/1042 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SP F HL++HS YS+++G + +++++D  AAD QP++AITD  NLF  ++F + A   GI
Sbjct: 30   SPQFTHLRLHSEYSIVDGLIRIDDVVDAAAADSQPSLAITDLANLFGMVKFYKAARKKGI 89

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC + I   D+                ++LL   A GY +L EL+S+ +L +  + 
Sbjct: 90   KPIIGCDVWITNDDD----------RDKPSRLLLLAKNAAGYLQLCELISQAWLSNLHRG 139

Query: 128  SVRICLSWLQEIGT-EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               I   WL+++    GLI L G   G +  A    +   AE+    + ++F    Y+ +
Sbjct: 140  RAEIRTEWLEKLSPANGLIALAGAHFGDVGIAIENGNLPAAERNAQRWSRIFPGHFYIEI 199

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR    ++  +  Q+V LA   +LP+VAT+   FL++E++ AH+    ++   +++   R
Sbjct: 200  QRAGQPNQEAQVRQLVALAARLQLPVVATHPIQFLTKEEFIAHEARTCISEGEMLANSRR 259

Query: 246  -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R         ++EM  +F+DLP AL+N+ EIA+RC+  LQ+  P LP F   E   I 
Sbjct: 260  VRRFNDRQCFTTQAEMAGLFADLPAALQNSNEIAKRCNLTLQLGKPRLPDFPTPEGMTIG 319

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                + L  +A +GLE RL         +    Q Y  RLDFE N I +M F GYFLIVA
Sbjct: 320  ----DFLVAEARSGLERRLLQLYPDETKREAERQRYADRLDFETNTIIKMGFPGYFLIVA 375

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQWAK N +PVGPGRGSGAGS+ AY+L+ITD+DPL ++LLFERFLNP+R+SMPDFDID
Sbjct: 376  DFIQWAKNNGVPVGPGRGSGAGSLVAYSLSITDLDPLEYNLLFERFLNPERVSMPDFDID 435

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ+ RD VI+YV+++YG E V+QI TFG++ AK A+RDVGR L M Y+  D + KLIP 
Sbjct: 436  FCQEGRDRVIQYVKDRYGKEAVSQIATFGTMAAKGAIRDVGRVLDMGYNFCDGISKLIPF 495

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  AI ++    E +  +  V +LL+++Q++EG+ R+   HA G+VI    L+
Sbjct: 496  KPGKQVTIADAILEEPLLAERQENEDEVRQLLDLAQQVEGIARNIGMHAGGVVIAPGKLT 555

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV---D 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  ++ ++ +    +    
Sbjct: 556  DFCPLYTQGGDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAVRYIKRLDPAMADFS 615

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  +P +D  +Y LLT   T+ +FQLES GM+  L+  +PD  EDIIALV+LYRPGP+D 
Sbjct: 616  LEKLPLNDKASYDLLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDL 675

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G E+     P  + +L ET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 676  IPDFCRRKHG-ERFDYPDPRTEGILSETYGIMVYQEQVMQMAQVVGGYSLGGADLLRRAM 734

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM + ++ F  GA+K+G+S+  A  IF+L+ KFA YGFNKSHAAAYA+++Y TA
Sbjct: 735  GKKKAEEMAEHRQIFRDGAAKDGLSEAKADEIFDLMEKFAGYGFNKSHAAAYALLAYHTA 794

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVG----- 831
            ++K H+P  F+AA+++L MD+ EKI+   +D      + ++PP +N     F        
Sbjct: 795  YLKAHHPAAFMAANLSLAMDDTEKIRILVEDVIDVCAMTLLPPDINQSDYRFTPVGEPGK 854

Query: 832  -DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               +I Y L A+KG G      I+ A A  PF  L DF  RVD +++NRR ++SL+ AGA
Sbjct: 855  RAKQIRYGLGAVKGSGQGAIEAIVAARASGPFTDLFDFAKRVDKRQVNRRTVDSLIRAGA 914

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             DCF   R  LL S+    + A+  E   +    ++F  +      +    K +      
Sbjct: 915  FDCFEVDRAVLLASVALALEAAEQHE--ASINQVSLFGGDDSDLDTQPEYLKVAPWTDKQ 972

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            R   E+  LGFY SGH  + Y   +R+           +       +A ++VS + + T+
Sbjct: 973  RLTEEKTALGFYLSGHLFNSYAEEVRRFARTKLSSLEPSRDPRM--IAGIIVSLRVQMTQ 1030

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G  +  VT  + +   +   +
Sbjct: 1031 RGK-MVIVTLDDSSATVDVTVY 1051


>gi|308235821|ref|ZP_07666558.1| DNA polymerase III subunit alpha [Gardnerella vaginalis ATCC 14018]
 gi|311114403|ref|YP_003985624.1| DNA-directed DNA polymerase III subunit alpha [Gardnerella vaginalis
            ATCC 14019]
 gi|310945897|gb|ADP38601.1| DNA-directed DNA polymerase III alpha subunit [Gardnerella vaginalis
            ATCC 14019]
          Length = 1183

 Score = 1005 bits (2599), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/1065 (32%), Positives = 549/1065 (51%), Gaps = 54/1065 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  H+ YSLL+GA  + +++ +      PA+AITD  N+  A E    A  AGI+P
Sbjct: 7    NFVHLHNHTHYSLLDGASKIPDLVARAKELGMPAVAITDHGNMHGAYEMWSTAVKAGIKP 66

Query: 70   IIGCQLDIDMQ------DNLKMTNQGKTPFPT-----VPSIVLLVSTAEGYQRLIELVSR 118
            IIG +  +  +        +    + +          +  + +     EG   L++  S 
Sbjct: 67   IIGIEAYVTPETARQDKSRVHWGTEAQRSDDVSGGGLITHMTMWAENDEGLTNLLKASSI 126

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L  +  +  R+    L    ++G+I  +G  SG I           A +    F+ +F
Sbjct: 127  ANLEGRVMRYPRMDKDVLSRY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIF 185

Query: 179  -GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
              D  ++ L  H    +      ++++A     PL+ATN+  ++ EED EA D ++ +  
Sbjct: 186  GRDNFFIELMNHGLSIETRVTKDLLEIAKRLNAPLLATNDLHYVHEEDREAQDAMLCINS 245

Query: 237  STVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP--ILP 293
             + +   DR +     +YLK+  +M  +F + PEA +NT+EIARRC+ +         +P
Sbjct: 246  GSRLDDPDRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGEDGAFMP 305

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            +F   E  D    E +    K   GLE R             +  ++ D+E  VI +M+F
Sbjct: 306  QFDCPEGWD----ETSLFLKKVEEGLERRYNNNV------PMEVLKQADYECGVICQMQF 355

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++  L+FERFLNP+R+
Sbjct: 356  CGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLNPERV 415

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            S+PD D+DF  D R +V+ YV  KYG ++VAQ + +G+++ K AL+D  R +   +S  +
Sbjct: 416  SLPDIDVDFDPDGRAKVLEYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGE 475

Query: 474  RLCK-LIPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRH 524
            ++ K L P      +S   I D+          FRE    DP   R+ E ++ +EGL R 
Sbjct: 476  KITKILPPPKNGKDMSFHDIFDEKSKRYAEAREFREMYDTDPDTKRITEEAKGIEGLIRQ 535

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  LT+++ 
Sbjct: 536  TGVHACATIMGSEPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTVIRD 594

Query: 585  SLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +L  +       +D + IP DD ETY LL    TLG+FQL+S GMR  L  ++PD   DI
Sbjct: 595  TLKNVEHNGKEPIDYTKIPLDDKETYQLLARGDTLGVFQLDSDGMRALLRTLKPDNFNDI 654

Query: 644  IALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQ 697
             AL++LYRPGP+D      Y  RKNG ++I  IHP     +  +L ET G+I+YQEQV  
Sbjct: 655  SALIALYRPGPMDMDSHTNYAKRKNGLQEITPIHPEVAEPLKDVLGETYGLIVYQEQVQS 714

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
             A++L+GYSL +ADVLRRAMGKK  E + K+K  F  G  ++G S+  A  ++++L  F+
Sbjct: 715  AARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFKGMKEHGYSEEAAQAVWDVLVPFS 774

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +  E  N +K   +  +AR+  I+++
Sbjct: 775  GYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRMGIRVL 834

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS--ADKPFDSLEDFCSRVDSK 875
             P +N   +++    + + + L A++ VG      I+         F   +DF +RV   
Sbjct: 835  QPDINESVLEYSAVGDVVRFGLGAVRNVGDKAVNDIISERESERGKFIDFKDFVNRVSFA 894

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEK 931
             LNRR++ESL+ +GA D     R  + +  + +      +++ +     ++FA     + 
Sbjct: 895  ALNRRLVESLIKSGAFDSINPCRRAIFEICEPLIDSVISIKRRQAGGQFDLFADLDDSDS 954

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                 +I +      +   +   E+ +LG Y S HPL     +L  +      + +   +
Sbjct: 955  DLGDAQINIPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLAGLREMSIAQLLNRAK 1014

Query: 992  ----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   + LA +V S  ++ ++KG+    VT  +     +  FF
Sbjct: 1015 TMGENQQVTLAGLVTSVDRRVSKKGNAWAIVTIEDMESSIQCMFF 1059


>gi|58426179|gb|AAW75216.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzae
            KACC10331]
          Length = 1321

 Score = 1005 bits (2598), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1083 (38%), Positives = 603/1083 (55%), Gaps = 80/1083 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 127  STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVEIDMPALAVTDLNNL 186

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 187  FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 234

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 235  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHAN-LFAL-AGRDSLAGRLFSEGRADLAEQQL 292

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 293  ADWQRVFGDGLHLELTRTGRECEERFNQFALNAAGVRGLPVVASNDVRFLYASDFNAHEA 352

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   YLK+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 353  RVCISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 412

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   + + +    ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 413  YFLPAYPVPDDETL----DSWIRSQSRDGLAARLEKSPIAPGKTRQDYVDRLEFELDTII 468

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 469  NMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 528

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 529  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 588

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLY 522
              VD + KLIPN     +   A+ +            +    +  V  L++++++LE L 
Sbjct: 589  GLVDSVAKLIPNILGITLK-DAMGEGKDSEMASPELIQRYQVEDDVRDLMDLARQLEDLT 647

Query: 523  RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+T
Sbjct: 648  RNAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 707

Query: 579  LTLLQKSLDFLAQRGV-----KVDLSLIPFDDHETYHL-LTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  +  R        VD++ IP DD  TY        T  +FQ ESSGMR+ L
Sbjct: 708  LTIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFALGNTGAVFQFESSGMRRLL 767

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQ
Sbjct: 768  KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQ 827

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 828  EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 887

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 888  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 947

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             + + PP VN     F+        Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 948  GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 1007

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 1008 RVGTTKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 1067

Query: 931  KGTFSDK-ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------ 983
              +     + L +           +E+  LGFY SGHP D ++  +R++           
Sbjct: 1068 DPSAPAMRLDLPESKEWPLGQLLTSERETLGFYLSGHPFDPHREEVRELVGCDLGALEKI 1127

Query: 984  --------------EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                           E  A     +  LA  V+  ++    KG    +V   +     E 
Sbjct: 1128 LASQQRGAGGGGGDGEKRAWRPEVSAILAGQVIGVRR----KGDSQVFVQLEDGRGRVEC 1183

Query: 1030 NFF 1032
            + F
Sbjct: 1184 SAF 1186


>gi|302550775|ref|ZP_07303117.1| DNA-directed DNA polymerase subunit III alpha [Streptomyces
            viridochromogenes DSM 40736]
 gi|302468393|gb|EFL31486.1| DNA-directed DNA polymerase subunit III alpha [Streptomyces
            viridochromogenes DSM 40736]
          Length = 1179

 Score = 1005 bits (2598), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1070 (32%), Positives = 539/1070 (50%), Gaps = 53/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA++D  NL  A +F   A  
Sbjct: 1    MSKPP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMSHIAMSDHGNLHGAYDFFHTAQK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +    + G   L  
Sbjct: 60   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWAVNSTGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EG++  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETIAQW-SEGIVASTGCPSGEVQTRLRLGHFDEALKAAADY 178

Query: 175  KKLF-GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  DR ++ L  H    +      ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIEIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEASAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHA 289
             +     +S  DR R     +YLK+  EM +I S     E   NT  IA           
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCANTRLIAEMVDTTGMFEK 298

Query: 290  -PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P+F   E       E +  R + + G+  R   G         D  +++++E++ I
Sbjct: 299  RDLMPKFDIPEG----YTEVSWFREETLRGMHRRFPDGI------PDDRMKQVEYEMDTI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
              M F GYFL+VADFI WAKK  I VGPGRGS AGS+ AYAL ITD+DP+   L+FERFL
Sbjct: 349  ISMGFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYALGITDLDPIPHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G+++AK A++D  R L  P
Sbjct: 409  NPERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIA--------DDSRFREARLADPSVDRLLEISQKLE 519
            Y+  DRL K +P D     ++L  I         +    R     +P V ++++ ++ +E
Sbjct: 469  YAMGDRLTKAMPADVLGKGINLDGITNPEHPRYSEAGEIRAMYENEPDVKKVIDTAKGVE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++    ++  VP++      + +TQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSETITDHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   +G+ +DL  +P DD  T+ LL    TLG+FQ +   MR  L  M+PD
Sbjct: 589  TIMDDAVKMVKSNKGIDIDLLSLPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMKPD 648

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLID----PMLKETQGVIIYQ 692
              EDI A+ +LYRPGP+       Y  RKNG+++I  IHP ++     +L  T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLREVLDVTHGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F  GA K G S      ++++
Sbjct: 709  EQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVLFQEGARKKGFSDEAIQALWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H+AAY ++SY TA++K ++P E++AA +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             I+++PP VN    +F   GD+ I + L+A++ VGT     I+    A   + S  D+  
Sbjct: 829  GIKVLPPDVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIRCRKAKGKYVSFPDYLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +V++   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F   
Sbjct: 889  KVEAVVCNKRTTESLIKAGAFDAMGHTRKGLTAHYEPMIDNVVAVKRKEAEGQFDLFGGM 948

Query: 931  KGTFSDKITLEK-----FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                S +              + +     E+ +LG Y S HPL   + IL      G  +
Sbjct: 949  GEDESSEPGFGLDVEFSPDEWDKTYLLAQEREMLGLYVSDHPLFGLEHILSDKADAGISQ 1008

Query: 986  SV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    G+ + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1009 LTGGDYSDGSVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|313669043|ref|YP_004049327.1| DNA polymerase III, alpha subunit [Neisseria lactamica ST-640]
 gi|313006505|emb|CBN87969.1| putative DNA polymerase III, alpha subunit [Neisseria lactamica
            020-06]
          Length = 1144

 Score = 1005 bits (2598), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1034 (38%), Positives = 584/1034 (56%), Gaps = 34/1034 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            P+    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PVGAADVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      MV  F+DLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PRDFTPGQFFIPPETMVERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++  D+L KLIP 
Sbjct: 410  FCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPL 469

Query: 482  DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   P+SL  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470  EANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
               P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       VD+ 
Sbjct: 529  DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIVDVG 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589  KIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G+ K   IHPL++ +L  T G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMGK
Sbjct: 649  DFVARMKGQ-KFQYIHPLLEGILDPTYGIMVYQEQVMQVAQIIGGYSLGGADLLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708  KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
            K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    + +I Y+
Sbjct: 768  KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKIRYA 827

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D    +
Sbjct: 828  LGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  LL ++D     A   +K        +F   +      + L    + + S +   E+ 
Sbjct: 888  RAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLVDAPMWSESEKLAEEKT 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V+GFY SGHP   Y   + ++     +        +++RLA  V + +    ++G  I +
Sbjct: 945  VIGFYLSGHPFGPYAQEVCQIAPTKLDRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAF 1000

Query: 1018 VTFSEPAKEYEANF 1031
            V+  + + + E   
Sbjct: 1001 VSLEDLSGQVEIMV 1014


>gi|313156974|gb|EFR56406.1| putative DNA polymerase III subunit alpha [Alistipes sp. HGB5]
          Length = 1218

 Score = 1005 bits (2598), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1104 (31%), Positives = 561/1104 (50%), Gaps = 93/1104 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL VH+ YS+L+GA ++  ++ +  A    AIAITD  N++    F   A  AG++
Sbjct: 2    PDFVHLHVHTQYSILDGAAAIKPLIKRAKALGMNAIAITDHGNMYGVKNFHDTATDAGVK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+GC++ +     +K   +          ++LL    EGY  L ++VS  +        
Sbjct: 62   PILGCEVYV-----VKNRFEKDKDEKAGDHLILLAKNLEGYHNLCKMVSYSFTEG-FYYK 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    +++   EGLI  +    G + +A   N  + AE+ +  FK +FG+  Y+ LQ 
Sbjct: 116  PRIDKQLIEQYH-EGLICCSACLGGEVPQAIMHNDIEEAERVVQWFKNIFGEDYYLELQL 174

Query: 189  HRGYDRYRESQ-----------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            H   D  +++            +++LA  + +  + +N+  F+  ED  AHD L+ +   
Sbjct: 175  HPSGDPQKDADVYENQLRVNKVILELAAKYGVKYICSNDVHFILAEDAVAHDHLICLNTG 234

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
              +   +R R T   YLK+  EM ++F D PEAL  T+EIA +C      HAP++P F  
Sbjct: 235  RDLDDPNRMRYTFQEYLKSPEEMAALFPDHPEALATTLEIADKCEDYKLTHAPLMPNFPP 294

Query: 298  KECDDI----------QKEEEN------------------------------------EL 311
             E   I          +K E+                                      L
Sbjct: 295  PEDFPIALGELRESFVKKIEDEEMLAKIGACATVPELEELVAGDKELSDRLMVAKQYCYL 354

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            ++    G  +R       K        +R+ +EL+ I  M F GYFLIV D+I+ A++  
Sbjct: 355  KDLTYKGAHMRYGDVLDEKT------EERIKYELSTIEWMGFPGYFLIVWDYIRAAREMG 408

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGSV AY L IT+IDPL++ LLFERFLNP+R+S+PD D+DF +D R +V+
Sbjct: 409  VSVGPGRGSAAGSVVAYCLKITNIDPLKYDLLFERFLNPERISLPDVDVDFDEDGRADVL 468

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RY   KYG +RVAQI+TFG++  K A++DV R  ++  S+ DRL KL+P+          
Sbjct: 469  RYCVQKYGQKRVAQIVTFGTMAPKMAIKDVARVQKLALSESDRLSKLVPDKVTPDKKHGE 528

Query: 492  ------IADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                    +       R + +  +   L+ ++KLEG  R    HA G++IG   L +  P
Sbjct: 529  TPFDFVYKESPELAAERESPNQLIRNTLKYAEKLEGSIRQTGVHACGVIIGQDDLEKFAP 588

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            M     ++L V +F  K +E  GLIK DFLGL+TL++++ +++ +    GV VD+  I  
Sbjct: 589  MAIAKDAELNVVEFEGKEVESVGLIKMDFLGLRTLSIIKDAVENVKAVHGVDVDIDGISL 648

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  TY +     T G+FQ ES GM++ L  ++P+  ED+IA+ +LYRPGP++ I  +  
Sbjct: 649  DDAPTYEVFARGDTTGLFQFESPGMKKHLRNLKPNRFEDLIAMNALYRPGPMEYIPNFIA 708

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+E +      ++  L +T G+ +YQEQVM ++Q L+G++  EAD LR+AMGKK ++
Sbjct: 709  RKHGQEPVTYEIADMEEYLNDTYGITVYQEQVMLLSQKLAGFTGGEADTLRKAMGKKKRD 768

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +DK K +FI G  + G  + I   I+     FA Y FNKSH+  YA ++YQT ++K HY
Sbjct: 769  VLDKMKPKFIEGCKQRGHDEKICDKIWGDWEAFASYAFNKSHSTCYAYVAYQTGYLKAHY 828

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAI 842
            P EF+AA ++  + +++++  +  + ++  I+++ P +N     F       + + L A+
Sbjct: 829  PSEFMAALLSRNLADIKQLTLYMNECKRMGIRVLGPDINESMRTFSSNKAGDVRFGLGAV 888

Query: 843  KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQ 900
            KGVG      I+    A+  F  + D   RV+   +NR+  E+L +AG  D   G+ R +
Sbjct: 889  KGVGEAAVESIIAERNANGRFKDIYDLMERVNFSAVNRKCFENLAYAGGFDSISGFHRGK 948

Query: 901  LLQS----------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
               +          ++ + +Y Q  +  + N  +++F         +  L   +  +   
Sbjct: 949  FFGADARDNTGVTFIEQLMRYGQRFQAEKNNAQQSLFGGGGHVDIQRPVLPACADWSQLE 1008

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKK 1008
                E+ ++G Y S HPLD YK I+  M      E   +  ++G  I +A MVVS Q   
Sbjct: 1009 TLAKEREMIGHYLSAHPLDDYKIIINHMCKTQLTELENLEALKGQEIAVAGMVVSVQNLI 1068

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T+ G   G     +    +E   F
Sbjct: 1069 TKTGKPWGKFVLEDYNGTHEFALF 1092


>gi|90415809|ref|ZP_01223742.1| DNA polymerase III, alpha subunit [marine gamma proteobacterium
            HTCC2207]
 gi|90332183|gb|EAS47380.1| DNA polymerase III, alpha subunit [marine gamma proteobacterium
            HTCC2207]
          Length = 1132

 Score = 1005 bits (2598), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1017 (39%), Positives = 586/1017 (57%), Gaps = 39/1017 (3%)

Query: 41   QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
             PA+A+TD NN F+A++F +    +GI+PI+             +    ++   +   +V
Sbjct: 1    MPAVALTDFNNFFAAVKFYKATQGSGIKPIL----------GTDLLVLDESGEGSPTQLV 50

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            LLV    GY  L +L+S+ Y   Q +    I  SWL E  ++GLI L+GG SG I  A  
Sbjct: 51   LLVKDQTGYANLTKLISKAYQDGQRQGVPHIKKSWLGEF-SDGLIALSGGRSGEIGVALV 109

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLF 219
             N    A   L  F  LFGDR Y+ LQR  R  +       V LA  +  P+VATN+  F
Sbjct: 110  SNRLDDAATALEEFTALFGDRFYLELQRTGRPEEEDYLHAAVDLAARYNCPVVATNDVRF 169

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            +S++++EAH+  + +     +    R  R +   YL++  EMV +FSD+PEALEN+VEIA
Sbjct: 170  ISKDEFEAHEARVCIHEGRALDDPRRERRFSEQQYLRSPEEMVELFSDIPEALENSVEIA 229

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
            RRCS  +++    LP +   E   I +    E +      LEV     A       + Y 
Sbjct: 230  RRCSIDIRLGEYFLPDYPIPEGMTINEFFTLESKKGLQNRLEVLYDTSAPDFPEIQKRYM 289

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL+FEL +I +M+F GYFLIV DFI WAK N IPVGPGRGSGAGS+ AY+L ITD+DPL
Sbjct: 290  ERLEFELKIIIQMEFPGYFLIVMDFIGWAKTNLIPVGPGRGSGAGSLVAYSLLITDLDPL 349

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
             + LLFERFLNP+R+SMPDFDIDFC + RD VI YV  +YG + V+QI+TFG++ AKA +
Sbjct: 350  EYDLLFERFLNPERVSMPDFDIDFCMEGRDRVIAYVAEQYGRDAVSQIVTFGTMAAKAVV 409

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
            RDV R     Y   D+L KLIP +    +  +A+  +   ++    D     +  ++ +L
Sbjct: 410  RDVARVQGKSYGLADKLSKLIPFEVGMTLE-KAVEQEETLKQFLDEDDEAGEIWGMALQL 468

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EG+ R+   HA G+VI    ++   P+Y D      VTQF+   +E AGL+KFDFLGL+T
Sbjct: 469  EGVARNCGKHAGGVVIAPTLITDFSPIYCDETGAGVVTQFDKNDVEDAGLVKFDFLGLRT 528

Query: 579  LTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            LT++  ++  +      +     ++  IP DD  TY L+    T  +FQLES GM++ ++
Sbjct: 529  LTIIDWAVRMINADRSNIGEEPLEIDKIPLDDQPTYGLMQRAETTAVFQLESRGMKELIK 588

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSI-----HPLIDPMLKETQ 686
             + PD  EDIIALV+L+RPGP+ + +V  + NRK G+ ++        H  + P L+ T 
Sbjct: 589  KLGPDRFEDIIALVALFRPGPLQSGMVDDFINRKKGRAEVSYPHSQYQHECLKPALEPTY 648

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+I+YQEQVMQIAQ + GY+L  AD+LRRAMGKK  +EM KQ+E F+ GA   G +K +A
Sbjct: 649  GIILYQEQVMQIAQEMGGYTLGGADLLRRAMGKKNADEMAKQRELFMDGAIGKGFTKELA 708

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
             NIF+L+ KFA YGFNKSH+AAYA+++YQTAW+K HYP +F+AA+++ +MD  +K+  F 
Sbjct: 709  SNIFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKQHYPAQFMAATISSDMDKTDKVVTFI 768

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDS 864
             + R  N++++PP VN     F V   NR+ Y L AIKG+G     +I+ A     PF  
Sbjct: 769  DECRAMNLELLPPDVNGGQFHFSVDQQNRVIYGLGAIKGLGEGPVSNILAARNEGGPFKD 828

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALD------CFGYSRMQLLQSLDNIQKYAQWVEKN 918
            L DFC+RVD +K+N+R +E+L+ +GA D        GY R  +L ++D   K A+   +N
Sbjct: 829  LFDFCARVDGRKVNKRAIEALIRSGAFDEVGPEGEIGYRRAVMLAAMDQAVKLAEQHARN 888

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPLDVYKPIL 975
             ++   ++F +     +  I    +    S     R   E+  LG Y +GHP+D Y+  L
Sbjct: 889  TSSGMGDLFGNSIVESASDINYTSYGAARSLSGRERLNGERDTLGLYLTGHPIDEYEEEL 948

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +KM      +           ++ M+++ +  K ++G    ++T  + +   E + F
Sbjct: 949  QKMHPNRISKLRPAKV--LATVSGMIIAMRVMKNKRGENFAFITLDDKSGRLELSIF 1003


>gi|297194911|ref|ZP_06912309.1| DNA polymerase III subunit alpha [Streptomyces pristinaespiralis ATCC
            25486]
 gi|197723064|gb|EDY66972.1| DNA polymerase III subunit alpha [Streptomyces pristinaespiralis ATCC
            25486]
          Length = 1179

 Score = 1005 bits (2598), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1070 (32%), Positives = 551/1070 (51%), Gaps = 53/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA++D  NL  A +F   A  
Sbjct: 1    MTKPP-FTHLHVHTQYSLLDGAARLKDMFEACNEMGMTHIAMSDHGNLHGAYDFFHTAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  + A G   L  
Sbjct: 60   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANATGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  ++GLI  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SQGLIASTGCPSGELQTRLRLGQFDEALKSASEY 178

Query: 175  KKLF-GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  DR ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEAAAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVH- 288
             +     +S  DR R     +YLK+  EM +I S     E   NT+ +A++         
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCRNTLLVAQQVDTEGMFEA 298

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P+F   E       E    + + + G+E R   G        +D ++++++E++VI
Sbjct: 299  KNLMPKFDIPEG----HTEVTWFKEEVMRGMERRFPGGI------PEDRQKQVEYEMDVI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VADFI WAK   I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFL
Sbjct: 349  IQMGFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  P
Sbjct: 409  NPERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y+  DRL K +P D     + L  I D S          R     +P V ++++ ++ +E
Sbjct: 469  YAMGDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRAMYENEPDVKKVIDTAKGVE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++    +++ VP++      + +TQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSETITEHVPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   +G+ +++  +P DD +T+ LL    TLG+FQ +   MR  L  M+PD
Sbjct: 589  TIMDDAIKMVKSNKGIDLEMLSLPLDDPKTFELLQRGDTLGVFQFDGGPMRSLLRLMKPD 648

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLID----PMLKETQGVIIYQ 692
              EDI A+ +LYRPGP+       Y  RKN +++I  IHP ++     +L  T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMNSHTNYALRKNKQQEITPIHPELEEPLREVLDVTYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  +E+ K    F  GA + G S      ++++
Sbjct: 709  EQVQKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFVLFQKGAREKGYSDEAIQALWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H+AAY ++SY TA++K ++P E++AA +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             I+++PP+VN    +F   GD+ I + L A++ VG      I++   A   + S  DF  
Sbjct: 829  GIKVLPPNVNESMSNFAAQGDDVILFGLTAVRNVGQNVVESIIKTRKAKGKYSSFPDFLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +V++   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F   
Sbjct: 889  KVEAVVCNKRTIESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVAVKRKEAEGQFDLFGGM 948

Query: 931  KGTFSDKITL---EKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                SD+       +FS    + S     E+ +LG Y S HPL   + +L         +
Sbjct: 949  GEEASDEPGFGLDVEFSDVEWDKSYLLAQEREMLGLYVSDHPLFGIEHVLSDKTDAAISQ 1008

Query: 986  SV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1009 LTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|317124660|ref|YP_004098772.1| DNA polymerase III subunit alpha [Intrasporangium calvum DSM 43043]
 gi|315588748|gb|ADU48045.1| DNA polymerase III, alpha subunit [Intrasporangium calvum DSM 43043]
          Length = 1197

 Score = 1004 bits (2597), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1089 (34%), Positives = 566/1089 (51%), Gaps = 72/1089 (6%)

Query: 5    LEKSPS------FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
            +   P+      FVHL VH+ YS+L+GA  + ++  + A    PA+A TD   +F A EF
Sbjct: 1    MSTDPAPRPDQNFVHLHVHTEYSMLDGAARIGDLFTEAARMGMPALATTDHGYVFGAYEF 60

Query: 59   SQKACAAGIQPIIGCQLDIDMQ----DNLKMTNQGKTPFP-----TVPSIVLLVSTAEGY 109
             +KA   G++PIIG +  I       D  K++                 + +L    +G 
Sbjct: 61   WKKAKGTGVKPIIGVEAYITPGTHRADRTKVSWGDGGRDDVSGSGAYTHMTMLAENNDGM 120

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L  + S   L     +  RI    L   G +GLI+ TG  S  I     F     A +
Sbjct: 121  HNLFRMSSIASLDQVYTKWPRIDRELLSSYG-KGLIVTTGCPSSEIQTKLRFGMYDAARE 179

Query: 170  RLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                 + +F  D ++V L  H    +R  + ++++LA   +LPL+ATN+  +   ED +A
Sbjct: 180  VAGELRDIFGRDNVFVELMDHGLDIERRTQRELIRLARDLDLPLLATNDLHYTRAEDAKA 239

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            H  L+ V   + +   +R +   +  YLK+  EM  ++ +LPEA +NT+ +A RC     
Sbjct: 240  HAALLCVQSGSTLMDPNRFKFDAEDFYLKSAQEMRHLWRELPEACDNTLLVAERCEVSFT 299

Query: 287  VHAP-ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                  +PRF   E +D    E +    +   GL+ R  +G           R++  FE 
Sbjct: 300  EGEGRFMPRFPVPEGED----ETSWFIKEVETGLQRRFPEGVPDYA------RKQAAFEE 349

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +VI    +SGYFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD+DP+   L+FE
Sbjct: 350  DVIVSKGYSGYFLVVADFINWAKRNGIRVGPGRGSGAGSMCAYAMGITDLDPIPHGLIFE 409

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+RMSMPDFD+DF + RR EVI+YV  KYG ERVAQI+T+G+++AK A++D  R +
Sbjct: 410  RFLNPERMSMPDFDVDFDERRRGEVIKYVTEKYGSERVAQIVTYGTIKAKQAVKDAARVM 469

Query: 466  QMPYSQVDRLCKLIPND-PAHPVSLQAIA--------DDSRFREARLADPSVDRLLEISQ 516
              P+S  ++L K +P D     V L  I         + S FR     +   + +++ ++
Sbjct: 470  GHPFSVGEQLTKAMPPDVMGKGVPLAEIYNPEHKRYNEGSEFRALVQTERHFEEVVDAAK 529

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             LEGL R    HAAG+++   PL  ++P+ + ++    +TQF+    E  GL+K DFLGL
Sbjct: 530  GLEGLKRQWGVHAAGVIMSSEPLIDVIPIMKRLQDGQVITQFDYPSCEALGLVKMDFLGL 589

Query: 577  KTLTLLQKSLDFLA-QRGVKVDLSLIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALE 633
            + LT+L  +++ +   R + +DL  +  D  D  TY LL    TLG+FQL+  GMR  L 
Sbjct: 590  RNLTILDDAIENIKANRDLDIDLDALSKDMTDRATYDLLGRGDTLGVFQLDGGGMRALLR 649

Query: 634  GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP------------LID 679
             MQPD  EDI A ++LYRPGP+  +    +  RKNGK+ +  + P             ++
Sbjct: 650  LMQPDNFEDISAALALYRPGPMGVNAHTNFALRKNGKQALTPLDPKLEGKLQPEMVAALE 709

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
            P+L  T G++IYQEQVM+IAQ L+GY+L  AD+LRRAMGKK KE +D +   F  G  + 
Sbjct: 710  PILGTTYGLVIYQEQVMEIAQKLAGYTLGNADLLRRAMGKKKKEVLDAEYVPFSDGMKQK 769

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G ++     ++E+L  F+DY FNK+H AAY ++SY T ++K +YP E++AA +T   D+ 
Sbjct: 770  GFNEASVKALWEVLVPFSDYAFNKAHTAAYGLVSYWTGYLKANYPAEYMAALLTSVRDDK 829

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
            +K   +  + R   I+++PP VN    +F      I + +AAI+ VG      +++A  +
Sbjct: 830  DKSALYLNECRHMGIKVLPPDVNESVANFAAVGTDIRFGMAAIRNVGVPVVEAVIKAREE 889

Query: 860  -KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
               F S +DF S+V +   N+R +ESL+ AGA D  G SR  +++  +        V+K 
Sbjct: 890  KGAFASFKDFLSKVPAVVCNKRTIESLIKAGAFDSLGESRRGMVEVHERYVDALVEVKKQ 949

Query: 919  RTNKHENIFA-----------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
                 +++F               G F     +      + +     E+ +LG Y S HP
Sbjct: 950  EAIGQDSLFGAFDMGDQSGSTGGAGAFDGLPGVPSL-EWDKATLLSFEREMLGLYVSDHP 1008

Query: 968  LDVYKPILRKMGIKGYEESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            L   + IL+                  G  + +A ++ S Q K+T+KG      T  +  
Sbjct: 1009 LFGIEHILQSHADTSIASLTGDDPKPDGTPVTVAGLITSLQLKRTKKGDLWAIATVEDLD 1068

Query: 1025 KEYEANFFP 1033
               E  FFP
Sbjct: 1069 GAIECLFFP 1077


>gi|74316876|ref|YP_314616.1| DNA polymerase III subunit alpha [Thiobacillus denitrificans ATCC
            25259]
 gi|74056371|gb|AAZ96811.1| DNA polymerase III, alpha subunit [Thiobacillus denitrificans ATCC
            25259]
          Length = 1141

 Score = 1004 bits (2597), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/1035 (38%), Positives = 589/1035 (56%), Gaps = 34/1035 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL++H+ YS+++G + ++  + +      PA+ ++D +N F  ++F + A  AG++
Sbjct: 4    PRFIHLRLHTEYSIVDGLVRVDEAVKRAREIAMPALGVSDLSNTFGWVKFYRAARGAGVK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC + +             T       ++LLV   EGY+RL EL++R Y  +  +  
Sbjct: 64   PIFGCDVWVSN----------ATDRNRPSRLLLLVQHREGYRRLCELLTRAYQENLHRGR 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  SWL E    GL+ L+GG  G + +A   +   VA      +  LF  R Y+ LQR
Sbjct: 114  AEIDPSWLAE-NNGGLLALSGGDGGNVAQAIIDDKPAVARAAAEAWAALFPGRYYLELQR 172

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                +       ++ +     LP VAT+   FL+ +D++AH+  + +A   ++    RP 
Sbjct: 173  FGQAHTERLIDGLLDIGAELGLPAVATHPIQFLAADDFKAHEARVCIAEGMMLGDPRRPR 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + Y K   EM ++F+DLPEAL N+VEIA+RC+  L++    LP F   +   +   
Sbjct: 233  PFTAEQYFKTPDEMAALFADLPEALANSVEIAKRCNLTLELGKSKLPDFPTPDGMGL--- 289

Query: 307  EENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             ++ +R +A  GL  R   L      +     +Y +RL+FEL  I +M F GYFLIVADF
Sbjct: 290  -DDYMRQRAYEGLAERMAHLYPDEAERAAKRPEYTERLEFELGTIIQMGFPGYFLIVADF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFDIDFC
Sbjct: 349  INWAKNNGVPVGPGRGSGAGSLVAYCLRITDLDPLAYDLLFERFLNPERVSMPDFDIDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QD RD VI+YV++KYGH  V+QI TFG++ AKA LRDVGR L +PY  VD+  KL+PN+ 
Sbjct: 409  QDGRDRVIQYVKDKYGHAAVSQIATFGTMAAKAVLRDVGRVLDLPYLFVDKFVKLVPNEL 468

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   + +  E    +  +  LL +++KLEG+ R+   HA G++I    L+   
Sbjct: 469  GISL-AEAREKEPQIDERARNEEELAELLPLAEKLEGITRNVGMHAGGVLIAPGKLTDFC 527

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD--LSLI 601
            P+Y+   SD  V+QF+   +E  GL+KFDFLGL+TLT+L +++ F+ +   + D  L  +
Sbjct: 528  PLYQAEGSDAAVSQFDKDDVEAIGLVKFDFLGLRTLTILAEAVRFVQRHEDRKDFRLEDL 587

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
            P DD   Y L     T  +FQ ES   +   + ++ DC EDIIAL++L RPGP+ + +V 
Sbjct: 588  PLDDPAVYRLFADGNTTAVFQSESRSAKDLEKRLKGDCFEDIIALMALNRPGPLGSGMVD 647

Query: 661  -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RK GK+K    HP ++P+LK T G+I+YQEQVM +AQ+L+GYSL  AD+LRRAMGK
Sbjct: 648  DFIARKQGKQKPEYFHPDLEPVLKSTYGIIVYQEQVMLVAQILAGYSLGGADMLRRAMGK 707

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM KQ+  F+ GA K G+   IA  +F+L+ KFA+YGFNKSH+AAYA+++Y TAW+
Sbjct: 708  KKPEEMAKQRAIFLEGADKRGVDVKIAERLFDLMEKFAEYGFNKSHSAAYALVAYHTAWL 767

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYYS 838
            K +YP EF+AA+M+ EM + +K++ F +D R   + ++PP +N     F  V    I Y 
Sbjct: 768  KAYYPAEFMAATMSSEMSDTDKVRIFYEDCRANGLTMLPPDINLSGYRFDPVSRTEIRYG 827

Query: 839  LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKG G      I+    A+ P+  L D   RVD + LNRRVLE+LV AGA D     
Sbjct: 828  LGAIKGSGEAAIGAIVAERGANGPYKGLFDLARRVDKRYLNRRVLEALVKAGAFDSLSDH 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  L+ S+    + A      R+     +F        +   L          +   E+ 
Sbjct: 888  RASLMASIGVALETADRA--ARSGGQVGLFGEVLEGGGED--LVDVPYWPEQEKLLQEKS 943

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             LG++FSGHP   Y   +     +  +          + LA + VS + + TR+G  +  
Sbjct: 944  ALGYFFSGHPFTAYLAEVSGFAKRRLDSLEPAR--EPVMLAGVAVSLRTQMTRRGK-MLI 1000

Query: 1018 VTFSEPAKEYEANFF 1032
            +   +   + E   F
Sbjct: 1001 LLLDDATAQVEVVIF 1015


>gi|167753692|ref|ZP_02425819.1| hypothetical protein ALIPUT_01973 [Alistipes putredinis DSM 17216]
 gi|167658317|gb|EDS02447.1| hypothetical protein ALIPUT_01973 [Alistipes putredinis DSM 17216]
          Length = 1287

 Score = 1004 bits (2597), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/1105 (31%), Positives = 561/1105 (50%), Gaps = 94/1105 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL VH+ YS+L+GA +++ ++ +  A    A+AITD  N++    F   A  AGI+
Sbjct: 70   PDFVHLHVHTQYSILDGAAAISPLIKRAKALGMKALAITDHGNMYGVKNFHDVATDAGIK 129

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+GC+  + +++  +     K        ++LL     GY  L ++VS  +        
Sbjct: 130  PILGCETYV-VRNRFEKDKDEKAGD----HLILLAKNLTGYHNLCKIVSYSFTEG-FYYK 183

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L++   EGLI  +    G + +A   N  + AE+ +  FK +FGD  Y+ LQ 
Sbjct: 184  PRIDKKLLEQYH-EGLICCSACLGGEVPQAIMRNDMEEAEQVVRWFKSIFGDDYYLELQL 242

Query: 189  HRGYDRYR-----------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            H   D  +              +++L+    +  + +N+  F+  ED  AHD L+ +   
Sbjct: 243  HPSGDPRKDADVYENQLLVNKALLELSAKCGVKYICSNDVHFILAEDAVAHDHLICLNTG 302

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI------------- 284
              +   +R R T   YLK+  EM  +F D PEAL  T+EIA +                 
Sbjct: 303  RDLDDPNRMRYTFQEYLKSPEEMAQLFPDHPEALATTLEIADKVEEYKLTHAPLMPNFPP 362

Query: 285  -LQVHAP--------------------ILPRFIEKECDDIQKEEEN------------EL 311
              + H P                    I      +E D   +E +              L
Sbjct: 363  PPEFHMPFEELRESLVKKIEDQEELARIDACHSVEELDAWAEESKERSEKLMTAKQFCYL 422

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            ++    G  +R           +++  +R+ +EL+ I  M F GYFLIV D+I+ A++  
Sbjct: 423  KDLTYKGAHLRYG------AELSEEVEKRIRYELSTIEWMGFPGYFLIVWDYIRAAREMG 476

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGSV AY L IT+IDPL++ LLFERFLNP+R+S+PD D+DF +D RD+V+
Sbjct: 477  VSVGPGRGSAAGSVVAYCLKITNIDPLKYDLLFERFLNPERISLPDVDVDFDEDGRDDVL 536

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             Y  +KYG +RVAQI+TFG++  K A+RDV R  ++  S+ DRL KL+P+          
Sbjct: 537  HYCVHKYGQKRVAQIVTFGTMAPKLAIRDVARVQKLALSESDRLAKLVPDKVTPDKKAGE 596

Query: 492  ------IADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                    +       R + +  +   L+ ++KLEG  R    HA G++IG   L    P
Sbjct: 597  TPFDFCYKESPELAAERESPNQLIRNTLKYAEKLEGSIRQTGVHACGVIIGQDDLENFAP 656

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            M     +DL V +F  K +E  GLIK DFLGL+TL++++ ++  +    G+ VD+  IP 
Sbjct: 657  MAIAKDADLNVVEFEGKEVESVGLIKMDFLGLRTLSIIKDAVTNVKNVHGIDVDIDNIPL 716

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  TY + +   T G+FQ ES GM++ L  ++P+  ED+IA+ +LYRPGP++ I  +  
Sbjct: 717  DDAPTYEVFSRGDTTGLFQFESPGMKKHLRNLKPNRFEDLIAMNALYRPGPMEYIPNFIA 776

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G E +      ++  L +T G+ +YQEQVM ++Q L+G++  EAD LR+AMGKK + 
Sbjct: 777  RKHGLEPVTYDIADMEEYLSDTYGITVYQEQVMLLSQKLAGFTGGEADTLRKAMGKKQRA 836

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +DK K +FI G SK G    I   I+     FA Y FNKSH+  YA I+YQT ++K HY
Sbjct: 837  VLDKMKPKFIEGCSKRGHDAKICEKIWGDWEAFASYAFNKSHSTCYAYIAYQTGYLKAHY 896

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAI 842
            P EF+AA ++  + ++++I  +  + ++  I+++ P +N    +F       + + LAA+
Sbjct: 897  PSEFMAALLSRNLSDIKQITLYMNECKRMGIRVLGPDINESLNNFSSNKAGDVRFGLAAV 956

Query: 843  KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQ 900
            KGVG      I+     +  F  + DF  RV+   +NR+ LE++ +AG  D   G+ R +
Sbjct: 957  KGVGEAAVESIVAERNKNGKFKDIYDFFERVNYTAVNRKCLENIAYAGGFDSISGFHRCK 1016

Query: 901  LLQS----------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSS 949
               +          ++ + +Y Q  +  + N  +++F   +G        +      ++ 
Sbjct: 1017 FFGTDLRDSSSTTFIEQLVRYGQRFQSEKDNAQQSLFGGGEGVVDIQHPVIPACQDWSTL 1076

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQK 1007
                 E+ ++G Y S HPLD Y  I+R M      +   + ++RG  I +A MV++ Q  
Sbjct: 1077 ETLGKEREMIGLYLSAHPLDDYAVIIRNMCKTQLSDLDNLESLRGQEIAVAGMVIATQNL 1136

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T+ G   G  T  +    +E   F
Sbjct: 1137 VTKTGKPWGKFTLEDYNGTHEFALF 1161


>gi|294666388|ref|ZP_06731634.1| DNA polymerase III subunit alpha [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
 gi|292603830|gb|EFF47235.1| DNA polymerase III subunit alpha [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
          Length = 1196

 Score = 1004 bits (2597), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1083 (38%), Positives = 603/1083 (55%), Gaps = 80/1083 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHAN-LFAL-AGRDSLAGRLFNEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGRDGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   Y+K+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E + +    ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPEDETL----DSWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLY 522
              VD + KLIPN     +   A+ +            +    +  V  L++++++LE L 
Sbjct: 464  GLVDSVAKLIPNILGITLK-DAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523  RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+T
Sbjct: 523  RNAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582

Query: 579  LTLLQKSLDFLAQRGV-----KVDLSLIPFDDHETYHL-LTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  +  R        VD++ IP DD  TY     +  T  +FQ ESSGMR+ L
Sbjct: 583  LTIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQ
Sbjct: 643  KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQ 702

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703  EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             + + PP VN     F         Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 823  GLTVKPPRVNESAYMFAAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883  RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 931  KGTFSDK-ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------ 983
              +     + L +            E+  LGFY SGHP D ++  +R++           
Sbjct: 943  DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKI 1002

Query: 984  --------------EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                           E  A     +  LA  VV  ++    KG    +V   +     E 
Sbjct: 1003 LASQQRGGGDGGGDGEKRAWRPEVSAILAGQVVGVRR----KGDSQVFVQLEDGRGRVEC 1058

Query: 1030 NFF 1032
            + F
Sbjct: 1059 SAF 1061


>gi|294625959|ref|ZP_06704571.1| DNA polymerase III subunit alpha [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 11122]
 gi|292599754|gb|EFF43879.1| DNA polymerase III subunit alpha [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 11122]
          Length = 1196

 Score = 1004 bits (2597), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1083 (38%), Positives = 603/1083 (55%), Gaps = 80/1083 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHAN-LFAL-AGRDSLAGRLFNEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGRDGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   Y+K+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E + +    ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPEDETL----DSWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLY 522
              VD + KLIPN     +   A+ +            +    +  V  L++++++LE L 
Sbjct: 464  GLVDSVAKLIPNILGITLK-DAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523  RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+T
Sbjct: 523  RNAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582

Query: 579  LTLLQKSLDFLAQRGV-----KVDLSLIPFDDHETYHL-LTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  +  R        VD++ IP DD  TY     +  T  +FQ ESSGMR+ L
Sbjct: 583  LTIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQ
Sbjct: 643  KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQ 702

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703  EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             + + PP VN     F         Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 823  GLTVKPPRVNESAYMFAAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883  RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 931  KGTFSDK-ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------ 983
              +     + L +            E+  LGFY SGHP D ++  +R++           
Sbjct: 943  DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKI 1002

Query: 984  --------------EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                           E  A     +  LA  VV  ++    KG    +V   +     E 
Sbjct: 1003 LASQQRGGGGGGGDGEKRAWRPEVSAILAGQVVGVRR----KGDSQVFVQLEDGRGRVEC 1058

Query: 1030 NFF 1032
            + F
Sbjct: 1059 SAF 1061


>gi|294628828|ref|ZP_06707388.1| DNA polymerase III, alpha subunit [Streptomyces sp. e14]
 gi|292832161|gb|EFF90510.1| DNA polymerase III, alpha subunit [Streptomyces sp. e14]
          Length = 1179

 Score = 1004 bits (2596), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1070 (32%), Positives = 545/1070 (50%), Gaps = 53/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ D         IA++D  NL  A +F   A  
Sbjct: 1    MSKPP-FTHLHVHTQYSLLDGAARLKDMFDACNEMGMTHIAMSDHGNLHGAYDFFHTAQK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +    + G   L  
Sbjct: 60   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWAVNSTGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EG++  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETIAQW-SEGIVASTGCPSGEVQTRLRLGQFDEALKSAADY 178

Query: 175  KKLF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  DR ++ L  H    +      ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIDIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQV-H 288
             +     +S  DR +     +YLK+  EM +I S     E   NT+ +A           
Sbjct: 239  CIQTGKNLSDPDRFKFDGTGYYLKSTDEMYAIDSSDAWQEGCANTLLVAEMVDTTGMFVK 298

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P+F   E       E    + +   G+E R   G        +D ++++++E++VI
Sbjct: 299  RDLMPKFDIPEG----YTEVTWFKEEVRRGMERRFPGGI------PEDRQKQVEYEMDVI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DP+   L+FERFL
Sbjct: 349  IQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYALGITDLDPIPHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  P
Sbjct: 409  NPERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIA--------DDSRFREARLADPSVDRLLEISQKLE 519
            Y+  DR+ K +P D     + L  I         +    R     +P V ++++ ++ +E
Sbjct: 469  YAMGDRITKAMPADVLGKGIDLDGITNPSHPRYSEAGEVRAMYENEPDVKKVIDTAKGVE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++    +++ VP++      + +TQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSETITEHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   +G+ +DL  +P DD  T+ LL    TLG+FQ +   MR  L  M+PD
Sbjct: 589  TIMDDAVKMVKSNKGIDIDLLALPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMKPD 648

Query: 639  CIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLID----PMLKETQGVIIYQ 692
              EDI A+ +LYRPGP  +D+   Y  RKNG ++I  IHP ++     +L  T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHPELEAPLKEVLDVTYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  +E+ K    F +GA KNG S      ++++
Sbjct: 709  EQVQKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFTIFQAGAKKNGYSDEAIQALWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H+AAY ++SY TA++K ++P E++AA +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             I+++PP+VN    +F   GD+ I + L+A++ VGT     I+    A   + S  D+  
Sbjct: 829  GIKVLPPNVNESESNFAAQGDDVILFGLSAVRNVGTNVVESIIRTRKAKGKYSSFPDYLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +V++   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F   
Sbjct: 889  KVEAVVCNKRTTESLIKAGAFDTMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGM 948

Query: 931  KGTFSDKITLEK-----FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                S +              + +     E+ +LG Y S HPL   + +L      G  +
Sbjct: 949  GEETSSEPGFGLDVEFSPDEWDKTYLLAQEREMLGLYVSDHPLFGLENVLADKADAGISQ 1008

Query: 986  SV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1009 LTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|283456439|ref|YP_003361003.1| DnaE DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
 gi|283103073|gb|ADB10179.1| DnaE DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
          Length = 1188

 Score = 1004 bits (2596), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/1074 (31%), Positives = 544/1074 (50%), Gaps = 67/1074 (6%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H+ YSLL+GA  + +++ +      PA+ ITD  N+  A E    A  AGI+PIIG 
Sbjct: 3    LHNHTHYSLLDGASKIPDLVKRAKELNMPAVGITDHGNMHGAYEMWSTAVNAGIKPIIGI 62

Query: 74   QLDIDMQ---------------------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            +  +  +                     ++ K      +    +  + +   T EG   L
Sbjct: 63   EAYVTPETARQDPTRVSWDTNWNPDLDPNHRKRNPNDVSGGGLITHLTMWAETDEGLVNL 122

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
            ++  +   L  +  +  R+    L +  ++G+I  +G  SG I           A +   
Sbjct: 123  MKASTDANLEGRVMRYPRMDKEILSKY-SKGIIASSGCPSGIIQTRLLLGQFDEALRAAG 181

Query: 173  TFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              + +F  D  Y+    H    +R     ++ +A     PL+ATN+S ++  ED  A D 
Sbjct: 182  ELQDIFGRDNFYIEFMDHGLNIERQVTDGLLDIAKKLNAPLLATNDSHYVRAEDAGAQDA 241

Query: 231  LMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
            ++ +   + + +  R +     +YLK+  EM  +F DLPEA +NT+EIA RC+ +   H 
Sbjct: 242  MLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDLPEACDNTLEIAERCNVMFDDHE 301

Query: 290  P--ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                +P+F   E  D    E +    K   GLE R        G    +  ++ D+E  V
Sbjct: 302  DGAFMPQFDCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPIEVLKQADYECGV 351

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++  L+FERF
Sbjct: 352  ICQMQFCGYFLVVADYINWAKTHGVMVGPGRGSAAGAMVAYAMGITELDPIQHGLIFERF 411

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+S+PD D+DF  D R  V+ YV  KYG ++VAQ + +G+++ K AL+D  R +  
Sbjct: 412  LNPERVSLPDIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGF 471

Query: 468  PYSQVDRLCKLIPN--DPAHPVSL--------QAIADDSRFREARLADPSVDRLLEISQK 517
             +S  +R+ K +P        + L        +  A+   FRE   +DP   R+ + +  
Sbjct: 472  DFSMGERVTKALPPAQTGGKDIPLHDIFDPASKRYAEAREFRELYDSDPDAKRVTDEAMG 531

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EGL R    HA   ++G  P++   P+  +       T       E  GL+K DFLGL 
Sbjct: 532  IEGLIRQTGVHACATIMGSEPITNTSPL-LERTDGTVTTTLEYHTCETLGLVKMDFLGLS 590

Query: 578  TLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT+++ +L+ +   G    D + IP DD  TY LL+   TLG+FQL+S GMR  L+ ++
Sbjct: 591  NLTVIRDTLNNIEANGKDRIDHTRIPLDDKATYELLSRGDTLGVFQLDSDGMRSLLKTLK 650

Query: 637  PDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVII 690
            P    DI AL++LYRPGP+D      Y  RKNG +KI  IHP     +  +L ET G+I+
Sbjct: 651  PSNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEVLDETYGLIV 710

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  A  ++
Sbjct: 711  YQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGYSQEAAQAVW 770

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            ++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR
Sbjct: 771  DILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDKTALYLGEAR 830

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLEDF 868
            +  IQ++ P VN    ++    + + + L AI+ VG      I++        + +  DF
Sbjct: 831  RMGIQVLSPDVNESVFEYSAVGDVVRFGLGAIRNVGRNAVDDIIKERESGHGKYVNFPDF 890

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF- 927
              RV    LNRR++ESL+ AGA D    +R  L    +        +++ +     ++F 
Sbjct: 891  VRRVPLSALNRRLVESLIKAGAFDSVDPNRRALFTIHEAAINSVVGIKRKQAEGQFDLFS 950

Query: 928  -----AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
                 A + G     +++      +   +   E+ +LG Y S HPL   + +L  +    
Sbjct: 951  DLDDSAEQDGMGDAMVSVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVLSSLREMS 1010

Query: 983  YEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +        G  + +A ++ +  ++ ++KG+    VT  +     +  FF
Sbjct: 1011 IAHLIDRAGTMPDGQQVTVAGLITNVDRRVSKKGNPWAIVTIEDLESSIQCMFF 1064


>gi|78047019|ref|YP_363194.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv.
            vesicatoria str. 85-10]
 gi|78035449|emb|CAJ23094.1| DNA polymerase III alpha chain [Xanthomonas campestris pv.
            vesicatoria str. 85-10]
          Length = 1196

 Score = 1004 bits (2595), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1083 (38%), Positives = 604/1083 (55%), Gaps = 80/1083 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHAN-LFAL-AGRDSLAGRLFNEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   Y+K+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPREYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E + +    ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPEDETL----DSWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLY 522
              VD + KLIPN     +   A+ +            +    +  V  L++++++LE L 
Sbjct: 464  GLVDSVAKLIPNILGITLK-DAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523  RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+T
Sbjct: 523  RNAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582

Query: 579  LTLLQKSLDFLAQRGV-----KVDLSLIPFDDHETYHL-LTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  +  R        VD++ IP DD  TY     +  T  +FQ ESSGMR+ L
Sbjct: 583  LTIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQ
Sbjct: 643  KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQ 702

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703  EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             + + PP VN     F+        Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 823  GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RV + +LNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883  RVGTARLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 931  KGTFSDK-ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------ 983
              +     + L +            E+  LGFY SGHP D ++  +R++           
Sbjct: 943  DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKI 1002

Query: 984  --------------EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                           E  A     +  LA  VV  ++    KG    +V   +     E 
Sbjct: 1003 LASQQRGGGGGGGDGEKRAWRPEVSAILAGQVVGVRR----KGDSQVFVQLEDGRGRVEC 1058

Query: 1030 NFF 1032
            + F
Sbjct: 1059 SAF 1061


>gi|312129891|ref|YP_003997231.1| DNA polymerase iii, alpha subunit [Leadbetterella byssophila DSM
            17132]
 gi|311906437|gb|ADQ16878.1| DNA polymerase III, alpha subunit [Leadbetterella byssophila DSM
            17132]
          Length = 1198

 Score = 1004 bits (2595), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1080 (33%), Positives = 572/1080 (52%), Gaps = 70/1080 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL  H+ YSLL+GA S+  +  K   D+ PA+AITD  N+F   +F   A   G++PI
Sbjct: 3    FSHLHNHTQYSLLDGASSIKKLFAKAQQDEMPAVAITDHGNMFGVFDFVATAGKYGVKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+  +   D+    +  K         +LL   AEGY+ L +L S  Y+     +  R
Sbjct: 63   VGCEFYVV--DDHTRKSFTKDQKDVRYHQLLLAKNAEGYKNLTKLCSLGYMEGLYSKYPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I  + +++   +GLI  T      + +       + AE+    +   FG+  YV +QRH 
Sbjct: 121  ITKALIEKY-KDGLIATTCCIGALVPKTILKKGEEEAEQEFRWWLDRFGEDYYVEIQRHD 179

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK------ 243
              ++ R ++ +++ A  + + ++A+N+S ++ + D+ AHD+L+ +     +S        
Sbjct: 180  MAEQIRVNEVLLKFAKKYNVKVIASNDSHYVDQSDWVAHDILLCINTGEKLSTPSNKEFS 239

Query: 244  ----------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS------FILQV 287
                               Y K  +EM  +FSD+PEA++NT EI  +         IL  
Sbjct: 240  DDAEGSTKGTRFAFYNDQFYFKTTAEMTQLFSDIPEAIDNTNEIVGKVDHLNLKKDILLP 299

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
            + PI   F     D + + E   LR+    G   R        G  + +  +RL+FEL+ 
Sbjct: 300  NFPIPQEFKVHADDTLNQWE--YLRHLTFEGARKRY-------GTVSPEAEERLNFELHT 350

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I  M F+GYFLIV DFI+  ++  + +GPGRGS AGS  AY + IT+IDP++++LLFERF
Sbjct: 351  IKTMGFAGYFLIVMDFIKAGRELGVMIGPGRGSAAGSAVAYCIGITNIDPIKYNLLFERF 410

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNPDR SMPD D DF  + R  VI YV +KYG  +VAQIIT+G++  K++++DV R + +
Sbjct: 411  LNPDRKSMPDIDTDFDDEGRQRVIDYVVDKYGKNQVAQIITYGTMATKSSVKDVARVMDL 470

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQ---------------------AIADDSRFREARLADP 506
            P ++ + + KLIP+ P + ++ Q                      I +  + R+      
Sbjct: 471  PLAEANHIAKLIPDKPGYGMNFQKLIHAPISGPKSLTEIGLNPDEIENVKQIRDMYEGKD 530

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
               ++L+ ++KLEG  R+   HAAGI+I    LS++VP+     SDL +TQF  K IE A
Sbjct: 531  LTAKVLKQAEKLEGTVRNTGIHAAGIIIAPYDLSEIVPVSVAKDSDLLITQFEGKVIEDA 590

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            G+IK DFLGL+ LT+++++L  + +   V++D+  IP DD ETY L     T  IFQ ES
Sbjct: 591  GVIKMDFLGLRNLTIIKEALRMIKENYGVEIDIDNIPLDDEETYRLFQRGETNAIFQFES 650

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
             GM++ ++ +QPD  +D+IA+ +LYRPGPI  I  Y NRK+G+E I    P ++  L ET
Sbjct: 651  DGMKKYMKELQPDRFDDLIAMNALYRPGPIGYIPNYINRKHGREPITYDLPEMEEHLAET 710

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+ +YQEQVM ++Q L+ ++  +AD LR+AMGKK KE +DK K +F+ G +KNG  + +
Sbjct: 711  YGITVYQEQVMLLSQKLANFTKGDADTLRKAMGKKQKEVLDKMKAKFMEGGAKNGHPEKV 770

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               ++     FA Y FNKSH+  YA ++YQTA++KTHY  E++A  +T ++ N+EKI  F
Sbjct: 771  LDKVWTDWEAFAQYAFNKSHSTCYAFVAYQTAYLKTHYTAEYMAGVLTSQLGNIEKITFF 830

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEAS-ADKPFD 863
             ++ +   +Q++ P +N     F V       + L  IKG G      I+E    +  F 
Sbjct: 831  MEECKALGLQVLGPDINESQKRFSVNKKHEIRFGLGGIKGTGDAAVDAIIEEREKNGQFK 890

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWV 915
             + DF +RV+ + +N++ LESL +AGA DCF    R             ++ + +YA  V
Sbjct: 891  DIFDFITRVNLRTVNKKTLESLAYAGAFDCFEEIHRAIYFHVSEEGGTFIERLIRYANKV 950

Query: 916  EKNRTNKHENIFAHEKGTFS---DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
            ++++ +    +F    G  +    K  +EK     +  +   E+ V+GFY SGHPLD + 
Sbjct: 951  QEDKMSTQNTLFGTLGGDTAFNIQKPKIEKVEEWGNIEKLRYEKEVVGFYISGHPLDQFA 1010

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +               +     +  +V S   ++++ G++ G     +     E   F
Sbjct: 1011 MEMSLCRPLDNTLLEKENKDKEFTIGGVVTSANIRQSKNGNQFGIYRIEDYTGSLEIALF 1070


>gi|296274562|ref|YP_003657193.1| DNA polymerase III subunit alpha [Arcobacter nitrofigilis DSM 7299]
 gi|296098736|gb|ADG94686.1| DNA polymerase III, alpha subunit [Arcobacter nitrofigilis DSM 7299]
          Length = 1180

 Score = 1004 bits (2595), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1066 (35%), Positives = 601/1066 (56%), Gaps = 49/1066 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F HL +H+ YSLL+GA  + ++  KI A    ++A+TD  N+F A++F +   A
Sbjct: 1    MSQIPEFTHLHLHTEYSLLDGANKIKDLAKKIKALGMKSVAMTDHGNMFGAIDFYKAMKA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   + L   +  K        + L      GY+ L+ L S+ Y+   
Sbjct: 61   EGIKPIIGMEAYIHNSEELDDKSHRKR-----FHLCLYAKNQVGYKNLMFLTSQAYMHG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTF 174
                 RI    L+E  +EGL+       G ++                  + A++  L +
Sbjct: 115  FYYYPRINKKILRE-NSEGLVCSAACLQGEVNWHLNTQSERNVKNGAKGYEEAKRIALEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            K++FGD  Y+ + RH   D+ + + Q+++++    + +VATN++ +L ++D +AH+  M 
Sbjct: 174  KEIFGDDFYLEIMRHGISDQHFIDDQILRISKETGIKVVATNDTHYLKQKDAQAHEAFMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +A + +    +R R +  + YLK+  ++  +++D+PE +  T EI  +C+  +++  P  
Sbjct: 234  IAMNKLYDDPNRLRHSVHEFYLKSSEQISKLYADIPETIAATQEIVEKCNLEIKLGDPTP 293

Query: 293  PRF--------------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
            P F               E E +   + ++    ++   GLE RL      +    Q+Y+
Sbjct: 294  PNFKFTREKSQEEGLTLPEPELEYSLENDKILFVHECWKGLEKRLEIVPQERH---QEYK 350

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             RL  E+++I  MKF GY LIV DF+  AK+  IPVGPGRGS AGS+ A++L ITDIDPL
Sbjct: 351  DRLQVEIDIINSMKFPGYMLIVWDFVIAAKQMKIPVGPGRGSAAGSLVAFSLAITDIDPL 410

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
             + LLFERFLNP+R+SMPD D+DFCQ RR E++ YV  KYG   VAQIITFG L AK  +
Sbjct: 411  PYGLLFERFLNPERVSMPDIDMDFCQARRQEILDYVIEKYGRANVAQIITFGKLLAKGVI 470

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
            RDV R L MPYSQ D + KLIP++    ++  +   + + +E   ++P   R+ + +  L
Sbjct: 471  RDVARVLDMPYSQADAMAKLIPDELGINLT-SSYEKEPKIKELCDSNPQAKRVWDFAIAL 529

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R+A THAAG+VI + PL    P+++    +   TQ+N K++E   LIKFDFLGLKT
Sbjct: 530  EGLNRNAGTHAAGVVISNEPLWNKTPLFKPSGMETLATQYNGKYVEDVDLIKFDFLGLKT 589

Query: 579  LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT+++++   + QR   +V+   +  +D   Y L+ T  T+G+FQ+ES GM+   + ++P
Sbjct: 590  LTVIEEANKLIEQRHGKRVNFLTVDVNDKGVYDLIQTGNTIGLFQIESDGMQDLCKRLKP 649

Query: 638  DCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIY 691
               EDIIA+++LYRPGP+++ +   + +RK+G+E+I   +      + P+L+ T GVI+Y
Sbjct: 650  SNFEDIIAVLALYRPGPMESGMLDDFIDRKHGREEINYFYDEFDAPLRPILETTYGVIVY 709

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQI Q + G+SL  AD++RRAMGKKIKEEMD+ K  F  G  K G  K     +F+
Sbjct: 710  QEQVMQIVQTIGGFSLGGADLVRRAMGKKIKEEMDRLKGEFAIGGVKKGFVKEHCEELFD 769

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            L+ KFA YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE DN +K+ K+  + ++
Sbjct: 770  LIVKFAGYGFNKSHSAAYALVTFYTSYLKKYYPSEFMAALLTLEKDNTDKVVKYVDEVKR 829

Query: 812  FNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLE 866
              + + PP +N   + F      G   + + + AIKG G    + I++    +  F+   
Sbjct: 830  LKLDLFPPDINKSDLVFAPKKIDGQEVVMFGMGAIKGAGDVAIKSILKERNENGNFEDFA 889

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF SRVD  K+N+RV ESL  AG  D FGYSR  +L+ ++ I +        +     ++
Sbjct: 890  DFISRVDGSKVNKRVFESLAKAGGFDTFGYSRRSILEQIETINETVGKAMAAKKMATGSL 949

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            F   K     ++ LEKF         E E++ LGFY SGHPLD Y+  L  +      E 
Sbjct: 950  FGDSKELTKVEVQLEKFEEYELKELLELEKQSLGFYVSGHPLDEYREQLDGINYTLSSEL 1009

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 G+       V +  ++ ++KG++   +   +     E   F
Sbjct: 1010 EDLGDGSEALFIGKVETINERISKKGNKFAILNLMDLHGNIELMLF 1055


>gi|121998235|ref|YP_001003022.1| DNA polymerase III subunit alpha [Halorhodospira halophila SL1]
 gi|121589640|gb|ABM62220.1| DNA polymerase III, alpha subunit [Halorhodospira halophila SL1]
          Length = 1183

 Score = 1004 bits (2595), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1070 (38%), Positives = 598/1070 (55%), Gaps = 58/1070 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E  P FVHL++HS +SL++G + +N  +        PA+AITD +NLF  ++F + A AA
Sbjct: 3    EDPPPFVHLRLHSEFSLVDGIVRINEAVSAAREAGMPAVAITDQSNLFGMVKFYRAALAA 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G++PIIG  + +             T       + LL     GY+ L  L+SR Y     
Sbjct: 63   GVKPIIGGDVWLA----------DDTVEFGYARLTLLCRDRGGYRALSRLLSRAYREGAC 112

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYV 184
                 I   WLQ     GL+ L+GG+ G I +A        A +     ++ F  D  Y+
Sbjct: 113  GDIPVIRREWLQADAG-GLLALSGGAQGDIGQALLRGDEATARRYAEEHRRTFGEDGFYL 171

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R  R  D       V LA   +LP+VATN+  F+  EDY+AH+V + +     +   
Sbjct: 172  ELHRLGRPGDERHLHAAVALAADEDLPVVATNDVRFMRPEDYDAHEVRVCIHQGRTLDDP 231

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +RP   T   Y  + ++M   FSDLPEALE +V IA RCS  L++    LP F   E   
Sbjct: 232  NRPRHYTEQQYFADAADMAERFSDLPEALETSVRIAERCSVDLELDTNYLPDFPVPEGHT 291

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFL 358
            +     + LR ++  GL  RL Q  +A+   A +    Y +RLD EL VI +M F GYFL
Sbjct: 292  V----ASFLRAESERGLTQRLEQRGLAEDEDADEVEATYHRRLDHELAVIEQMGFPGYFL 347

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFI+WA+ N+IPVGPGRGSGAGS+ AYAL IT++DPLR+ LLFERFLNP+R+SMPDF
Sbjct: 348  IVADFIRWARDNHIPVGPGRGSGAGSLVAYALGITNLDPLRYDLLFERFLNPERVSMPDF 407

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC +RRDEVI YV ++YG E+V+QI T G++ A+A +RDVGR     +  +DR+ KL
Sbjct: 408  DVDFCMERRDEVIEYVSDRYGAEKVSQIATHGTMAARAVVRDVGRVYGHAFGYMDRIAKL 467

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP +    +  +A+  +   R     D ++  L++ ++ LEG+ R+   HA G+VI    
Sbjct: 468  IPFEIGMTLD-KALEQEEDLRAEYDNDENIRELIDTARSLEGMARNVGKHAGGVVIAPTD 526

Query: 539  LSQLVPMYRDVRSD------LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            L+   P+YRD             T F+   +E  GL+KFDFLGL+TLT++  ++  + + 
Sbjct: 527  LTDFSPLYRDPEEREDAEAWKVATHFDKDDVEAVGLVKFDFLGLRTLTIIDWTVQAVNRI 586

Query: 593  GVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
              +      D+  IP DD  T+ LL    T  +FQLES GM++ ++ +QPD  EDI+ALV
Sbjct: 587  LEQRGERALDIDGIPLDDSATFDLLKRCATTAVFQLESRGMKELIKRLQPDSFEDIVALV 646

Query: 648  SLYRPGPIDNIVV--YNNRKNGKEKIV-SI-----HPLIDPMLKETQGVIIYQEQVMQIA 699
            +L+RPGP+ + +V  +  RK+G+  +         HP + P+L+ T GVI+YQEQV +IA
Sbjct: 647  ALFRPGPLQSGMVDDFVERKHGRSAVAGYPTRELHHPDLMPVLQPTYGVILYQEQVQRIA 706

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q+L+GYSL EAD+LRRAMGKK  EEM KQ+ +F+ GA   G+S+  A  IF+L+ KFA Y
Sbjct: 707  QVLAGYSLGEADLLRRAMGKKKPEEMAKQRAKFLEGAQARGLSEGHATGIFDLMEKFAGY 766

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA++SYQTAW+K H+P  F+A+ ++ +MDN +K+  F  +AR   ++++PP
Sbjct: 767  GFNKSHSAAYALLSYQTAWLKCHFPAPFMASVLSSDMDNTDKVVIFLDEARAMGLEVLPP 826

Query: 820  SVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKL 877
             VN     F+  D R   Y L AIKGVG +    ++ E  A  PF  + D C RVD+ + 
Sbjct: 827  DVNRSDKPFRAVDERTIVYGLGAIKGVGESALDAVLGERDAHGPFGDVFDLCRRVDTGRA 886

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRRVLE+L  +G+LD    +R   +  +      A+ V +++     ++F          
Sbjct: 887  NRRVLEALCRSGSLDSLVPNRATGMAQIPAALAAAEQVTRDQAAGQTDLFGGPAEAVIAP 946

Query: 938  ----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES------- 986
                  + +        R   E+  LG + +GHP+D Y+  L  +     +         
Sbjct: 947  GGAGEEVAEEPEWPEEERLAAEKATLGLFLTGHPIDRYEHELPYLATDRLQRLASGAGGS 1006

Query: 987  ---VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   RG ++  A +VV+ + + T  G R+  +T  +     E   FP
Sbjct: 1007 GGDGNGGRGRSVTAAGLVVALRVRSTSTGGRLATLTLDDRTGRIEVVLFP 1056


>gi|282862139|ref|ZP_06271202.1| DNA polymerase III, alpha subunit [Streptomyces sp. ACTE]
 gi|282563164|gb|EFB68703.1| DNA polymerase III, alpha subunit [Streptomyces sp. ACTE]
          Length = 1179

 Score = 1004 bits (2595), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1070 (32%), Positives = 549/1070 (51%), Gaps = 53/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA+TD  NL  A +F   A  
Sbjct: 1    MSKPP-FTHLHVHTQYSLLDGAARLKDMFEAANTMGMSHIAMTDHGNLHGAYDFFHSAQK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  + + G   L +
Sbjct: 60   AGVTPIIGIEAYVAPESRKHKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFK 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +           A +    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDY 178

Query: 175  KKLFGD-RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            K +FG+ R ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  KDIFGEGRYFLELMDHGIEIERRVRDGLLEIGRKLGIPPLVTNDSHYTYAHEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHA 289
             +     +S  DR R     +YLK   EM ++ S     E   NT+ +A++         
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLKTTDEMYAVDSSDAWQEGCANTLLVAQQIDTTGMFEK 298

Query: 290  -PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P+F   +       E    + +   G+  R   G        +D +++ ++E+++I
Sbjct: 299  RDLMPKFEIPDGF----TEVTWFQEEVRVGMARRYPGGV------PEDRQKQAEYEMDII 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFL
Sbjct: 349  IQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPITHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  P
Sbjct: 409  NPERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y+  DRL K +P D     + L  I D            R     +P V ++++ ++ +E
Sbjct: 469  YAMGDRLTKAMPADVLGKGIDLSGITDPKHPRYGEAGEIRGMYENEPDVKKVIDTAKGVE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   +G+ +++  +P DD +TY LL    TLG+FQ +   MR  L  MQPD
Sbjct: 589  TIMDDAIKMVKANKGIDLEMLALPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQPD 648

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI A+ +LYRPGP+       Y  RKNG+++I  IHP ++  LKE    T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMNSHTNYAERKNGRQEITPIHPELEEPLKETLGLTYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F +GA KNG S      ++++
Sbjct: 709  EQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVLFQAGAKKNGYSDAAIQALWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             I+++PP+VN    +F   GD+ I + L A++ VG      I+    A   + +  DF  
Sbjct: 829  GIKVLPPNVNESESNFAAQGDDVILFGLTAVRNVGQNVVDSIIRCRKAKGKYSTFPDFLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +V++   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F   
Sbjct: 889  KVEAVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGGM 948

Query: 931  KGTFSDKITL---EKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                SD+       +FS      S     E+ +LG Y S HPL   + +L         +
Sbjct: 949  GEEESDEPGFGLDVEFSDIEWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKSDASISQ 1008

Query: 986  SV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1009 LTGGEHADGAIVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|42523550|ref|NP_968930.1| hypothetical protein Bd2078 [Bdellovibrio bacteriovorus HD100]
 gi|39575756|emb|CAE79923.1| dnaE [Bdellovibrio bacteriovorus HD100]
          Length = 1179

 Score = 1004 bits (2595), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1064 (39%), Positives = 613/1064 (57%), Gaps = 50/1064 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLLE A  +  I  K AA Q PA+A+TD  N+F A+EF        ++P
Sbjct: 2    SFVHLHVHSEYSLLEAACRVKAIAKKAAAMQMPAVALTDNGNMFGAVEFFFACKDNNVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G    I     L+              +V L    +GY+ L +L S  Y         
Sbjct: 62   ILGLDAYIAPGSRLEKKQDRDQVNTGPRRLVFLAQNNDGYRNLCKLSSIGYQEG-FYWKP 120

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    +Q+   E LI LTGG  G +  +F       A  ++   K++F DRLY+ + R 
Sbjct: 121  RIDYEVIQQY-NENLICLTGGLRGEVAESFLREGPDAALAKIRQLKEIFNDRLYLEMCRT 179

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +  R    +++ +    +P+VA+N+  +++++D  A +VL+ +  +  +S + R R+
Sbjct: 180  GVAEWDRLNPFLLEASKITGVPVVASNDVHYMTQDDQMAQEVLICIGSNKTLSDESRFRL 239

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA------PILPRFIEKECD 301
              D  YLK   +M  +F+D+PEA+ NT++IA RC    ++          LP F   +  
Sbjct: 240  GTDEFYLKKPEQMTELFADVPEAIANTLQIAERCDVKFKLKDDQGKPIYHLPTFPTDDGL 299

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYF 357
             ++++       KA AGL VR  + A       +    +Y +RL++EL +I RM F+GYF
Sbjct: 300  SLKEDIA----RKAKAGLLVRFEEAAARGEMIPEDKIPEYDKRLEYELGIIDRMGFNGYF 355

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK N+IPVGPGRGSGAGS+ AY L ITD+DPL   LLFERFLNP+R+SMPD
Sbjct: 356  LIVQDFINWAKVNDIPVGPGRGSGAGSLVAYVLRITDLDPLPNFLLFERFLNPERISMPD 415

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQDRR EVI+YV  KYG E V+QIIT+G LQA+AA++DVGR L M + +VD + K
Sbjct: 416  FDIDFCQDRRQEVIQYVTRKYGQESVSQIITYGKLQARAAIKDVGRVLGMTFPEVDAVTK 475

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            LIP      +  +A+  + R  E    +P+V+ L++++Q++EG+ RHA  HAAG++I D 
Sbjct: 476  LIPEKLGINLK-EAMEMEPRIGEMMEMNPTVNTLMDLAQRVEGMVRHAGIHAAGVIIADG 534

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKV 596
             L +  P+Y+    +  V Q++MK  EK GLIKFDFLGLKTLT +  +L  +   RG K+
Sbjct: 535  QLVRHAPLYKGADGE-QVVQYDMKHAEKIGLIKFDFLGLKTLTHINHALKLILKNRGKKI 593

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
               +IP  D  T+ +++   T G+FQ E  G+  A   ++P    D+ A+ SLYRPGP+ 
Sbjct: 594  QSQMIPMTDAATFEMMSRGDTAGVFQFEGEGITDATRKIRPSSFADVTAITSLYRPGPMA 653

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            NI  + +RK+GK  +  +      +L ET G+++YQEQVM IA  ++GYSL EAD+LRRA
Sbjct: 654  NIPDFTDRKHGKAPVEYLLEDTREVLSETYGIMVYQEQVMGIASRIAGYSLGEADMLRRA 713

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKKIKEEMD+ +ERF+ GA + G  K  + ++F+L+ KFADYGFNKSHAAAY+V++ QT
Sbjct: 714  MGKKIKEEMDQHRERFMKGAIERGHDKQRSSDLFDLMYKFADYGFNKSHAAAYSVVTIQT 773

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            AW+K HYP EF AA ++ E+ + EKI K+ +DA +  + +  PSVN     F V  + IY
Sbjct: 774  AWLKCHYPAEFFAALLSTELSDTEKIVKYSKDATKRGLTVRSPSVNFSDYLFDVHGDEIY 833

Query: 837  YSLAAIKGVGTTTARHIMEASAD---KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            + L AIKGVG      I+EA  +   K F+SL++F + +D++++N++V+E L+ AGA D 
Sbjct: 834  FGLGAIKGVGQNAVEAIIEARNNLPEKKFNSLDEFFNSIDTRRVNKKVIECLIKAGAFDG 893

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG  R QL+         A  ++K+R     ++F     T + K+TLE+      +    
Sbjct: 894  FGAHRAQLVAGYQKYLDRAIGLQKDREMGQSSLFDLGPSTET-KVTLEEVKPWARTASLT 952

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKM----------------GIKGYEESVATIRG----- 992
             E+ VLGFY S HPL  +   L ++                G    E   A  +      
Sbjct: 953  YEKEVLGFYLSDHPLKGF-DTLSELWTTCKVIDLPAQMPAPGSPEAEALKAAKKDWKNRD 1011

Query: 993  ---NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 + +A ++   ++  T+KG+R+ +    +     E   FP
Sbjct: 1012 AGKKRVVVAGLITELRELITKKGTRMAFGKVEDLTGSCELVIFP 1055


>gi|315604412|ref|ZP_07879478.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral
            taxon 180 str. F0310]
 gi|315314118|gb|EFU62169.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral
            taxon 180 str. F0310]
          Length = 1180

 Score = 1004 bits (2595), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/1067 (33%), Positives = 554/1067 (51%), Gaps = 52/1067 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL  HS YS+L+GA     + ++ A   QPAI +TD   LF A +F      AG+
Sbjct: 2    ADSFVHLHNHSEYSMLDGAAKTKAMAEEAARLGQPAIGLTDHGYLFGAYDFYTNCVNAGV 61

Query: 68   QPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            +PIIG +  +                    +   +   +   + L+  + EG   L  L 
Sbjct: 62   KPIIGLEAYVTPGTSRFDRQKVLWGEPWQRSDDVSAGGSYNHLTLVAYSTEGMLNLFRLG 121

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S      Q  +  R     L +   EGLI+ TG  SG +           A       + 
Sbjct: 122  SYASTDGQFGKWPRADKELLSQFH-EGLIVFTGCPSGAVQTRLRLGQWDEAVAEAAELRD 180

Query: 177  LF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            +F  +  YV +  H    +R    QV+ +A     PLVATN+S ++  +D +  D L+ +
Sbjct: 181  IFGPENFYVEVMDHGIDIERRTHQQVLDIAKLMNAPLVATNDSHYVKRDDRKIQDALLCI 240

Query: 235  AHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAP 290
               + ++  DR +   D +Y++   EM S++S+LP A ++T+EIA RC       +  A 
Sbjct: 241  NSGSRINDPDRFKFDGDGYYIRPSEEMRSLWSELPGACDSTLEIAERCDVRFTTTKEGAN 300

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             +P F   + +D    + +    +   GL  R   G           R++  +E +VI  
Sbjct: 301  YMPEFPVPDGED----KTSWFVKEVERGLRDRFPNGI------PDAVRKQAQYEEDVIIS 350

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F GYFL VAD+I WAK   I VGPGRGSGAGS+ AYA+ IT+++PL   L+FERFLNP
Sbjct: 351  MGFPGYFLTVADYINWAKSQGIRVGPGRGSGAGSMVAYAMKITELNPLEHGLIFERFLNP 410

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFD+DF + RRDEVI YV+ KYG +R++Q++T+G+++ K AL+D  R L   + 
Sbjct: 411  ERISMPDFDVDFDERRRDEVIAYVKRKYGEDRISQVVTYGTIKTKQALKDSARILGKDFK 470

Query: 471  QVDRLCKLIPN-DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGL 521
              ++L K +P       +S+  I D+          FR+    +P    +++ +  LEGL
Sbjct: 471  VGEQLTKALPPAIMGKDISVHGIFDEKDKRYAEAAEFRKFYEENPDTHEVVDYALGLEGL 530

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HA  +++    L+ ++P+ +  +    +TQF+    E  GL+K DFLGL+ LT+
Sbjct: 531  TRQWGVHACAVIMSSHTLTDIIPIMKRPQDGAIITQFDYPTCETLGLLKMDFLGLRNLTV 590

Query: 582  LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +L+ +A       DL  + FDD +TY LL    TLG+FQL+  GMR  L+ M+PD  
Sbjct: 591  VSDALENIAINGKPDPDLDHLSFDDKKTYELLGRGETLGVFQLDGGGMRDLLKLMKPDNF 650

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQEQ 694
            EDI A+ +LYRPGP+  ++   Y  RKNG+++I  IHP +    + +L  T G+I+YQEQ
Sbjct: 651  EDISAVGALYRPGPMGANSHTNYALRKNGRQEITPIHPELAEPLEEILGTTFGLIVYQEQ 710

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VMQIAQ L+GY+L +AD+LR+AMGKK KE +D+Q + F  G   NG S+     +++++ 
Sbjct: 711  VMQIAQKLAGYTLGQADILRKAMGKKKKEVLDQQFKGFRQGMIDNGYSEESIKALWDVVV 770

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+ Y FNK+H+AAY ++SY TA++K +YP E++AA +T   DN ++   +  + R  +I
Sbjct: 771  PFSAYAFNKAHSAAYGLVSYWTAFLKANYPTEYMAALLTSTKDNKDRRALYLAECRHMDI 830

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873
             ++PP VN    +F      I + L AI+ VG      I+   A+   F S +DF  +V 
Sbjct: 831  TVLPPDVNASMGNFAPDGEAIRFGLNAIQNVGGPVVDAIVGTRAEKGRFASFQDFLDKVP 890

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
                N+R ++SL+ AGA D  G++R  LL   D        V++N      ++F      
Sbjct: 891  QVVCNKRTIQSLIRAGAFDSMGHTRRALLARCDEAVDAIIDVKRNEAIGQFDLFGALDEG 950

Query: 934  FSD----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE---S 986
             S      + +      +   +   E+ +LG Y S HPL   +  L +       +   S
Sbjct: 951  SSSGTGLAVDIPDLPEFDRKTKLAAEREMLGLYVSDHPLRGVEAALARHQDYEIAQVVGS 1010

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +    +++A +V     K T++G+     T  + +   +  FFP
Sbjct: 1011 EGAMADRIVKIAGLVSGVTTKVTKQGNAWAIATIEDLSGSVDVLFFP 1057


>gi|254524078|ref|ZP_05136133.1| DNA polymerase III, alpha subunit subfamily, putative
            [Stenotrophomonas sp. SKA14]
 gi|219721669|gb|EED40194.1| DNA polymerase III, alpha subunit subfamily, putative
            [Stenotrophomonas sp. SKA14]
          Length = 1196

 Score = 1004 bits (2595), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1082 (37%), Positives = 610/1082 (56%), Gaps = 77/1082 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLN--------------NILDKIAADQQPAIAITDTN 50
            +  S  FVHL VH+ +SL +  + +               N+L +      PA+A+TD N
Sbjct: 1    MSNS-RFVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRSVELGLPALAVTDLN 59

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            NLF+ ++F + A   GI+PI G         ++ +  +G+ P+     + LL    EGY 
Sbjct: 60   NLFALVKFYKAAEGVGIKPIAGA--------DVLIAEEGQDPW----RMTLLCRDREGYL 107

Query: 111  RLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
             L  L++R ++     +  V +   WL + G   L  L  G      R       ++AE+
Sbjct: 108  SLSRLLTRAWMEGHRPEGGVAVHPDWL-KAGNANLFAL-AGRQSLAGRLALDGKHELAEQ 165

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAY-THELPLVATNNSLFLSEEDYEAH 228
            +L  ++++FGD L++ L R         +Q   +A     LP+VA+N+  FLS  ++ AH
Sbjct: 166  QLADWQRVFGDGLHLELTRTGREGEETFNQFALMAAGQRGLPVVASNDVRFLSPSNFSAH 225

Query: 229  DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            +  + ++   V+    RPR  +   YLK+  EM ++F+D+P+A++NT+ +A RC+  +++
Sbjct: 226  EARVCISTGRVLDDPKRPREYSDQQYLKSAEEMCALFADIPDAIDNTLALAERCNIEMRL 285

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                LP +   + + +    +  ++  +  GLE RL +  +A G   ++Y +RL+FELN 
Sbjct: 286  GTYFLPNYPVPDDETL----DTWIQKMSRDGLEERLEKNPLAPGKTREEYFERLEFELNT 341

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERF
Sbjct: 342  IIKMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERF 401

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L  
Sbjct: 402  LNPERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGF 461

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQ---------AIADDSRFREARLADPSVDRLLEISQKL 518
            PY  VD + KLIPN     +            +        +    +  V  L++++ +L
Sbjct: 462  PYGLVDGVSKLIPNILGIHLKDALGKGKEGPGSEMASPELIQRYETEDDVRDLIDLALQL 521

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFL 574
            E L R+A  HA G+VIG  PLS+  P+Y +   +     PVTQF+   +E+ GL+KFDFL
Sbjct: 522  EDLTRNAGKHAGGVVIGPEPLSEFCPLYAEHDENGLGKNPVTQFDKNDVEEVGLVKFDFL 581

Query: 575  GLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGM 628
            GL+TLT++  ++  + +R        VD++ IP DD  TY  +     T  +FQ ESSGM
Sbjct: 582  GLRTLTIIDWAVKAINKRHERAGIPPVDIAAIPLDDTPTYKDIFANGNTGAVFQFESSGM 641

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            R+ L+  +PD  ED+IALVSLYRPGP+D I  +N RK+G+E+I+   P  + +LK+T G+
Sbjct: 642  RRLLKDARPDRFEDLIALVSLYRPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGI 701

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++YQEQVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K+G+ +  A  
Sbjct: 702  MVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKDGVDEAKADA 761

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            IF+L+ KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ ++DN +K+  F  +
Sbjct: 762  IFDLMEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDLDNTDKVVGFLDE 821

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLE 866
             R   + ++PP VN     F+        Y L AIKGVG      +++       +  L 
Sbjct: 822  VRNLGLTVLPPKVNQSAFMFEAVTPDTIQYGLGAIKGVGQGACEAVVDERLKGGEYKDLL 881

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DFC+RV S KLNRR LE+++  GALD  G++R  L+  L  + K    + + R +   ++
Sbjct: 882  DFCTRVGSAKLNRRTLEAMINCGALDELGHNRASLMLQLPEVIKATDQMARERASGQNSL 941

Query: 927  FAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM------- 978
            F     + +  ++ L +        R   E+  LGFY SGHP D ++  +R +       
Sbjct: 942  FGGPDPSATTIQLDLPEAEEWPLLQRLNGERDTLGFYLSGHPFDPWRDDVRDLVGNDLGS 1001

Query: 979  --GIKGYEESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
               I        +             LA  VV  ++    KG    ++   +     E +
Sbjct: 1002 VEKIWSANSGGGSGGEKRWRPEVQTVLAGQVVGVRR----KGESQIFIQLEDGRGRVECS 1057

Query: 1031 FF 1032
             F
Sbjct: 1058 AF 1059


>gi|261337490|ref|ZP_05965374.1| DNA polymerase III, alpha subunit [Bifidobacterium gallicum DSM
            20093]
 gi|270277885|gb|EFA23739.1| DNA polymerase III, alpha subunit [Bifidobacterium gallicum DSM
            20093]
          Length = 1185

 Score = 1003 bits (2594), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/1073 (31%), Positives = 555/1073 (51%), Gaps = 57/1073 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++  FVHL  H+ YSLL+GA  + N++ +       A+ ITD  N+  A E   +A A
Sbjct: 1    MTQTADFVHLHNHTHYSLLDGASKIPNLVRRTKELGMNAVGITDHGNMHGAYELWSEAVA 60

Query: 65   AGIQPIIGCQLDIDMQ-DNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLI 113
             G++PI+G +     +      +              +    +  + L     EG   L+
Sbjct: 61   NGVKPILGIEAYATPETSRFDKSRVHWGTEEQRRDDVSGGGLITHLTLWAENDEGLVNLL 120

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +  S   L  +  +  R+    LQ    +G+I  +G  SG +           A +    
Sbjct: 121  KASSVANLEGRVMRYPRMDKEVLQTYA-KGIICGSGCPSGIVQTRLRLGQFDEALRAAGE 179

Query: 174  FKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             + +F  +  Y+ L  H    +R   + ++ +A   + PL+ATN+S ++  ED  A D +
Sbjct: 180  LQDIFGKENFYIELMDHNLSIERKVTNDLLTIAKKLDAPLLATNDSHYVMPEDASAQDAM 239

Query: 232  MAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +   + + +  R +   + +YL+   EM  +F +LPEA +NT+E+A RC+ I   H  
Sbjct: 240  LCINSGSTLDEPGRFKFEGEGYYLRPAEEMRELFKELPEACDNTLEVAERCNVIFDDHED 299

Query: 291  --ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +P F   E  D    E +    K   GLE R        G   ++  ++ D+E  +I
Sbjct: 300  GAFMPEFDCPEGWD----ETSLFLRKVEEGLEKRY------DGNPPEEVLKQADYECGII 349

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M+F GYFL+VAD+I WAK++++ VGPGRGS AG++ AYA+ ITD+DPL+  L+FERFL
Sbjct: 350  CQMQFCGYFLVVADYINWAKEHDVMVGPGRGSAAGAMVAYAMGITDLDPLQHGLIFERFL 409

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+S+PD D+DF  + R  V+ YV +KYGH++VAQ + +G+++ K AL+D  R +   
Sbjct: 410  NPERVSLPDIDVDFDPEGRMRVLDYVADKYGHDKVAQCVIYGTIKTKQALKDSARIMGYE 469

Query: 469  YSQVDRLCKLIPNDPAHPVSL----------QAIADDSRFREARLADPSVDRLLEISQKL 518
            +S  +R+ K +P        +          +  A+   +RE   +D  V R+ + +  +
Sbjct: 470  FSMGERVTKALPPAQTGGKDIAIRDIFNPDAKRYAEAREYRELYDSDADVKRITDQAMGI 529

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R    HA   ++G +P++   P+  +       T F     E  GL+K DFLGL  
Sbjct: 530  EGLIRQTGVHACATIMGSKPITDTSPL-LERTDGTVTTTFEYHTCETLGLVKMDFLGLSN 588

Query: 579  LTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  +L  +       +D + IP DD  T+ LL++  TLG+FQL+S GMR  L+ ++P
Sbjct: 589  LTVIHDTLKNIENNGKESIDYTKIPLDDKATFELLSSGETLGVFQLDSDGMRSLLKMLRP 648

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIY 691
            D   DI AL++LYRPGP+  D+   Y  RKNG+++I  IHP     ++P+LKET G+I+Y
Sbjct: 649  DNFSDISALIALYRPGPMGMDSHTNYAKRKNGQQQIDPIHPEVAEALEPILKETYGLIVY 708

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQ+   A++L+GYSL +ADVLRRAMGKK  E + K+K  F  G   +G S+  A  +++
Sbjct: 709  QEQIQFAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFQGMKDHGYSEEAAQAVWD 768

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +   FA Y FNK+H+AAY +ISY TA++K HYPVEF+AA +    +N +K   +  +AR+
Sbjct: 769  VFLPFAGYAFNKAHSAAYGLISYWTAYLKAHYPVEFMAALLQNAKNNKDKTALYLGEARR 828

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFC 869
              I+++ P VN    ++    + + + L A++ VG +  + I+    +    + +  D+ 
Sbjct: 829  MGIKVLSPDVNESLYEYSAVGDVVRFGLGAVRNVGESAVQDIIAERNNGKGKYVNFMDYI 888

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             RV    LNRR++ESL+ AGA D    +R  L Q  +        +++ +     ++FA 
Sbjct: 889  QRVPLPALNRRLVESLIKAGAFDSIEPNRRALFQVHEAAIDSYVNIKRKQAEGQFDLFAD 948

Query: 930  EKGTF------SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
              G          +I +      +   +   E+ +LG Y S HPL   + +L  +     
Sbjct: 949  LDGDEKSDTMGDARIDIPDIEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVLAGLREMSI 1008

Query: 984  EESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +           + +A +V   ++K +++G+    +T  +     +   F
Sbjct: 1009 ARLIDRAPQMEDRTQVTIAGLVTHVERKVSKRGNAWALITVEDMESSIQCMLF 1061


>gi|297565291|ref|YP_003684263.1| DNA polymerase III subunit alpha [Meiothermus silvanus DSM 9946]
 gi|296849740|gb|ADH62755.1| DNA polymerase III, alpha subunit [Meiothermus silvanus DSM 9946]
          Length = 1262

 Score = 1003 bits (2594), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/1097 (36%), Positives = 578/1097 (52%), Gaps = 88/1097 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAAD--QQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            F HL  H+ +SLL+GA  L +++  +     ++P +A+TD  NLF A++F + A  A ++
Sbjct: 30   FAHLHQHTQFSLLDGAARLKDLIKWVKQVSPEEPMLAMTDHGNLFGAVQFYKYATEAEVK 89

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG +  +  +       QGK        + LL    EGYQ L  L SR YL       
Sbjct: 90   PIIGYEAYVAAESRFDR-KQGKGLDGGYFHLTLLAKDFEGYQNLCRLASRAYLEG-FYGK 147

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187
             RI    L+E    G+I L+G     I +       + AE+RLL +  +FGD R ++ +Q
Sbjct: 148  PRIDREILRE-HNAGIIALSGCLGAEIPQFILQERHEDAERRLLEYLSIFGDKRYFIEVQ 206

Query: 188  RHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++ + ++V+ + A  + L +VATN+  ++ +ED EAH V++AV         +R 
Sbjct: 207  DHGLPEQKKVNRVLKEFADKYGLGIVATNDGHYVRKEDAEAHAVVLAVQSKATWDDPNRW 266

Query: 247  RVTPDHYL-KNRSEMV-------SIF-SDLPEALENTVEIARRCSFILQVHA--PILPRF 295
            +   D +  K   EM         ++     E  +N++EI R C+  L        +P++
Sbjct: 267  KFPCDEFYVKTPQEMRSTLEGERELWGKRFDELFDNSLEIGRMCNVELVPKKVQYRIPKY 326

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH---------------------- 333
               E     + E   LR    +GL  R         Y                       
Sbjct: 327  PLPEG----RTEVTYLRELTFSGLLKRYPDRVTDDLYREFLRRLGRPVPHGDGEVLAKAL 382

Query: 334  -----------------------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                                     +   R  +EL V+ RM F GY LIV DFI WAK  
Sbjct: 383  AELEDLEATRAYLPELKEGTPWGPWEILSRAVYELAVVERMGFPGYLLIVQDFINWAKSQ 442

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I VGPGRGS AGS+ AYA  IT+IDPL + LLFERFLNP R+SMPD D DF   RR EV
Sbjct: 443  GISVGPGRGSAAGSLVAYATRITNIDPLAYDLLFERFLNPARVSMPDIDTDFSDARRGEV 502

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL- 489
            I YV+++YG E VAQI TFG+L +KAA++D  R   +P  + D L KLIP     P  L 
Sbjct: 503  IEYVRSRYGDEMVAQIGTFGTLASKAAIKDAARVFGLPVKKADELAKLIPVVFGKPTPLE 562

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +AI      R     DP V R++E+++KLEGL R +S HAAG+VI D PL   +P+ R  
Sbjct: 563  KAIETIPDLRAEMEKDPLVARVMEVAKKLEGLNRQSSVHAAGVVISDVPLQDYIPLMRAG 622

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
              +  VTQ++M  +E  G +K DFLGL+TL+ L +    + + +GV +D   IP DD +T
Sbjct: 623  DGEGKVTQYDMGSVEALGFLKMDFLGLRTLSFLDECKRIVKESKGVDIDYDAIPIDDEKT 682

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL    T GIFQL+S+GM   + G++P  I+DIIAL +LYRPGP++NI  Y  R +G+
Sbjct: 683  FELLGRGETKGIFQLDSAGMTSTVRGLKPRRIQDIIALGALYRPGPMENIPTYIRRHHGR 742

Query: 669  EKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            E +           ++P+L+ET G+ +YQEQ+MQIA   +GYSL EAD+LRRAMGKK  E
Sbjct: 743  EAVAYPQFPNAAKYLEPILRETYGIPVYQEQIMQIASAAAGYSLGEADLLRRAMGKKKME 802

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM K + +F  GA++ GI +  A  +F+LL  FA+YGFNKSH+AAYA+++YQTA++K HY
Sbjct: 803  EMVKHRAQFKKGAAQRGIPEDEADRLFDLLEAFANYGFNKSHSAAYAILTYQTAYVKAHY 862

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF AA +T+E  + +K+ ++ + AR   ++++PP +N     F      + + L+A+K
Sbjct: 863  PVEFHAALLTVERHDSDKVAEYIRAARAMGVEVLPPDINRSSFSFSAVGQNVLFGLSAVK 922

Query: 844  GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      I+ E      F SL DF  RVDS   N+RV ESL+ AGA D  G  R Q+L
Sbjct: 923  NVGEAPTEAIIRERERGGRFKSLPDFLKRVDSAVANKRVAESLIKAGAFDELGE-RGQML 981

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             +LD++ K+AQ   ++  +    +FA  +     + TL K    +   R   E+  LG Y
Sbjct: 982  AALDDLLKWAQAERESANSGMMGLFADAQS----EPTLPKVPPLDEITRLRYEKEALGIY 1037

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGN-------NIRLAAMVVSKQQKKTRKGSRI 1015
             +GHPL  Y+  LR+      E+                + LA +V    +K T+ G  +
Sbjct: 1038 VTGHPLQRYEG-LREAASCTIEDLPDYFHSQKNGKSRIRVLLAGLVEGIVRKPTKSGGMM 1096

Query: 1016 GWVTFSEPAKEYEANFF 1032
                  +     E   F
Sbjct: 1097 CKFMLGDETGAVEVVAF 1113


>gi|71892068|ref|YP_277798.1| DNA polymerase III, alpha chain [Candidatus Blochmannia
            pennsylvanicus str. BPEN]
 gi|71796174|gb|AAZ40925.1| DNA polymerase III, alpha chain [Candidatus Blochmannia
            pennsylvanicus str. BPEN]
          Length = 1163

 Score = 1003 bits (2594), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1048 (39%), Positives = 621/1048 (59%), Gaps = 41/1048 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL VHS YS+++G  ++N ++ K A  + PA+A+TD NNLF  ++F   A  +GI+
Sbjct: 4    PRFIHLHVHSDYSMIDGLATVNKLITKAAYLKMPALALTDFNNLFGFIKFYDVAYKSGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q          +  LV+  +GY  LI L+S+ Y       +
Sbjct: 64   PIIGADFLV----------QDLIMDNKPSKLTCLVTDKQGYYHLIMLISKAYKNKCNNVA 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            + I   WL+E   +GLI+L+GG +G I R    N     E+ L  + K F +R Y+ L R
Sbjct: 114  LMIQRHWLKEY-NKGLILLSGGRNGDIGRYLLRNEKSKIEQCLYFYSKYFPNRYYLELIR 172

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R ++       ++L+    LP+VATN+  F++E+D+ AH+V +A+   T ++   + R
Sbjct: 173  TGRQHEESYLQLAIELSIAKGLPVVATNDVRFINEKDFLAHEVRVAIYAGTTLNNVQQLR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   ++K+  EM  +FSD+PE+L N+VEIA RC+F + +    LP+F         K 
Sbjct: 233  KYSSQQFMKSEQEMCELFSDVPESLVNSVEIAYRCNFTIDLGGYFLPQFPTG-----CKS 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             ++ L   A  GLE RL         +    + Y  RL  EL VI  M F  YFLIV +F
Sbjct: 288  AKDFLTTHAKKGLEERLILLFPKTKERLVQRKPYDLRLKNELQVINNMNFPSYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N+IPVGPGRGSGA S+ AY L IT++DPL+F LLFERFLNP+R+SMPD DIDFC
Sbjct: 348  IKWAKNNDIPVGPGRGSGASSLVAYVLKITELDPLQFDLLFERFLNPERISMPDLDIDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY+ ++R+ KLIP + 
Sbjct: 408  MDHRDLVIEHVSKTYGSEAVSQIITFGTMAAKAVIRDVGRVLGHPYALINRIAKLIPLES 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A + + + +     D  +  L++++ +LEG+ R+ S HA G+VI    ++   
Sbjct: 468  GITLK-KAFSIEPQLKLLYENDEDITELIDMALQLEGIVRNVSKHAGGVVIAPIKITDFS 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598
            P+Y D  S  P+TQF+   IE+ GLIKFDFLGL+TLT++  +L  +      Q    +D+
Sbjct: 527  PLYYDNDSIHPMTQFDKDDIERIGLIKFDFLGLRTLTIINHALKMINNTRLKQGLTIIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I   D +++H+L +  T  IFQLES G+++ ++ ++PDC ED+IAL++L+RPGP+ + 
Sbjct: 587  HSISLHDQKSFHVLQSSETTAIFQLESRGIKELIKRLKPDCFEDLIALIALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + NRK+G E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L +AD
Sbjct: 647  MVDNFINRKHGYETISYPDAKWQHESLRPVLESTYGIILYQEQVMQIAQVLAGYTLGQAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRA+GKK  E+M KQ+  F  GA+KNGI  T+++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  ILRRAIGKKKPEDMAKQRSFFNLGAAKNGIDNTLSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISYQT W+KTHYP EF+AA+++ +MDN+ K+     + ++  + I PP++NT    F V 
Sbjct: 767  ISYQTLWLKTHYPAEFMAAALSSDMDNLNKVVYLIGECQKMKLIISPPNINTSQYHFYVN 826

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             N+   Y   AIKG+G T+   I+ +      F  L DFC R+DS K+N R++E L+ +G
Sbjct: 827  ANKEIVYGFGAIKGIGKTSIESIITSRNKGGNFKELFDFCIRIDSTKINHRMIEKLILSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVE 946
            A D FG  R +L+ SL+++ K A    KN+ +K  +IF     E  T +     +     
Sbjct: 887  ACDSFGIHRSKLMASLNDVLKRANQHIKNKYSKQTDIFEMRLDESNTIAISDRDDNTPQW 946

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRK--MGIKGYEESVATIRGNNIRLAAMVVSK 1004
            ++ +  E E+  LG Y + HP   Y   +++    I   ++ +       + +  ++VS 
Sbjct: 947  SNQLLLEKEKEALGLYLTSHPTIQYIKTIKRCASNIVNIKDVLLETDNKILHIFGLIVSI 1006

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + K ++KG R+ +    + +   E   F
Sbjct: 1007 RTKLSKKGKRVVFFILEDYSGRLEIMIF 1034


>gi|239931832|ref|ZP_04688785.1| DNA polymerase III subunit alpha [Streptomyces ghanaensis ATCC 14672]
 gi|291440200|ref|ZP_06579590.1| DNA polymerase III subunit alpha [Streptomyces ghanaensis ATCC 14672]
 gi|291343095|gb|EFE70051.1| DNA polymerase III subunit alpha [Streptomyces ghanaensis ATCC 14672]
          Length = 1179

 Score = 1003 bits (2594), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1071 (32%), Positives = 546/1071 (50%), Gaps = 55/1071 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA++D  NL  A +F   A  
Sbjct: 1    MSKPP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHSAQK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +      G   L  
Sbjct: 60   AGVTPIIGIEAYVAPESRRNKRKILWGQPHQKRDDVSGSGGYTHKTMWAVNRTGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EG++  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETIAQW-SEGIVASTGCPSGEVQTRLRLGHFDEALKAAADY 178

Query: 175  KKLF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  DR ++ L  H    +      ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIDIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHA 289
             +     +S  DR +     +YLK+  EM +I S     E  +NT  IA           
Sbjct: 239  CIQTGKNLSDPDRFKFDGTGYYLKSTDEMYAIDSSDAWQEGCDNTRLIAEMVDTTGMFEK 298

Query: 290  -PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P+F   E       E +  R + + G+  R   G         D  +++++E++ I
Sbjct: 299  RDLMPKFDIPEG----YTEVSWFREETMRGMHRRFPDGI------PDDRMKQVEYEMDTI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
              M F GYFL+VADFI WAKK  I VGPGRGS AGS+ AYAL ITD+DP+   L+FERFL
Sbjct: 349  ISMGFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYALGITDLDPIPHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G+++AK A++D  R L  P
Sbjct: 409  NPERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y+  DR+ K +P D     + L  I D S          R     +P V ++++ ++ +E
Sbjct: 469  YAMGDRITKAMPADVLGKGIPLSGITDPSHPRYSEAGEVRSMYENEPDVKKVIDTARGVE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++    +++ VP++      + +TQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSETITEHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   +G+ +DL  +P DD  T+ LL    TLG+FQ +   MR  L  M+PD
Sbjct: 589  TIMDDAVKMVKANKGIDIDLLSLPLDDPTTFDLLQRGDTLGVFQFDGGPMRSLLRLMKPD 648

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI A+ +LYRPGP+       Y  RKNG+++I  IHP ++  LKE    T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEVLDVTYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  EE++K    F +GA KNG S      ++++
Sbjct: 709  EQVQKAAQIIAGYSLGEADILRRVMGKKKPEELEKNFVIFQAGARKNGYSDEAIQALWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H+AAY ++SY TA++K ++P E++AA +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             I+++PP+VN    +F   GD+ I + L+A++ VGT     I++   A   + S  D+  
Sbjct: 829  GIRVLPPNVNESEANFAAQGDDVILFGLSAVRNVGTNVVESIIKCRKAKGKYTSFPDYLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +VD+   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F   
Sbjct: 889  KVDAVVCNKRTTESLIKAGAFDSMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGM 948

Query: 931  KGTFSD------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                S        +T       + +     E+ +LG Y S HPL   + +L      G  
Sbjct: 949  GEEESGEPGFGLDVTFTD-DEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIS 1007

Query: 985  ESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +        G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1008 QLTGGDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|21242159|ref|NP_641741.1| DNA polymerase III subunit alpha [Xanthomonas axonopodis pv. citri
            str. 306]
 gi|21107574|gb|AAM36277.1| DNA polymerase III alpha chain [Xanthomonas axonopodis pv. citri str.
            306]
          Length = 1196

 Score = 1003 bits (2593), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1083 (38%), Positives = 602/1083 (55%), Gaps = 80/1083 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHAN-LFAL-AGRDSLAGRLFNEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGRDGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   Y+K+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E + +    +  +R+++  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPEDETL----DTWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLY 522
              VD + KLIPN     +   A+ +            +    +  V  L++++++LE L 
Sbjct: 464  GLVDSVAKLIPNILGITLK-DAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523  RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+T
Sbjct: 523  RNAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582

Query: 579  LTLLQKSLDFLAQRGV-----KVDLSLIPFDDHETYHL-LTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  +  R        VD++ IP DD  TY     +  T  +FQ ESSGMR+ L
Sbjct: 583  LTIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQ
Sbjct: 643  KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQ 702

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703  EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             + + PP VN     F+        Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 823  GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883  RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 931  KGTFSDK-ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------ 983
              +     + L +            E+  LGFY SGHP D ++  +R++           
Sbjct: 943  DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVRELVGCDLGALEKI 1002

Query: 984  --------------EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                           E  A        LA  VV  ++    KG    +V   +     E 
Sbjct: 1003 LASQQRGGGGGGGDGEKRAWRPEVGAILAGQVVGVRR----KGDSQVFVQLEDGRGRVEC 1058

Query: 1030 NFF 1032
            + F
Sbjct: 1059 SAF 1061


>gi|254391618|ref|ZP_05006817.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC
            27064]
 gi|294812110|ref|ZP_06770753.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC
            27064]
 gi|197705304|gb|EDY51116.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC
            27064]
 gi|294324709|gb|EFG06352.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC
            27064]
          Length = 1179

 Score = 1003 bits (2593), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1070 (32%), Positives = 548/1070 (51%), Gaps = 53/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++           IA+TD  NL  A +F  +A  
Sbjct: 1    MSKPP-FTHLHVHTQYSLLDGAARLKDMFSACKDMGMSHIAMTDHGNLHGAYDFFHQAKG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AGI PIIG +  +  +                    +         +  +   G   L  
Sbjct: 60   AGITPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANRTGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETIAQW-SEGLIASTGCPSGELQTRLRLGQFDEALKAASEY 178

Query: 175  KKLF-GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F   R ++ L  H    +R     ++++    ++P + TN+S +  + +  AHD L+
Sbjct: 179  QDIFGKGRYFLELMDHGIEIERRVRDGLLEIGKKLDIPPLVTNDSHYTFDHEAGAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVH- 288
             +     +S  DR R     +YLK+  +M +I S     E   NT+ +A +         
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLKSTDQMYAIDSSDAWQEGCRNTLLVAEQIDTSGMFEA 298

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P+F           E    + +   G+  R   G        +D +++ ++E++VI
Sbjct: 299  KNLMPKFEIPAGF----TEVTWFQEEVRTGMARRYPGGV------PEDRQRQAEYEMDVI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
              M F GYFL+VADFI WAKKN I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFL
Sbjct: 349  VSMGFPGYFLVVADFIMWAKKNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G+++AK A++D  R L  P
Sbjct: 409  NPERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y+  DRL K +P D     + L  I D +          R     +P V ++++ ++ +E
Sbjct: 469  YAMGDRLTKAMPADVLGKGIPLSGILDPAHPRYSEAGEIRGMYENEPDVKKVIDTARGVE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++   P++   P++      + +TQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSEPITDHAPVWVRHSDGVTITQWDYPSCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   +G+++++  IP DD  TY LL    TLG+FQ +   MR  L  M+PD
Sbjct: 589  TIMDDAVKMVKANKGIELEMLSIPLDDPTTYELLCRGDTLGVFQFDGGPMRSLLRLMKPD 648

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI A+ +LYRPGP+       Y  RKN +++I  IHP ++  LKE    T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMNSHTNYALRKNKQQEITPIHPELEEPLKEVLDVTYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F +GA KNG S      ++++
Sbjct: 709  EQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFTIFQAGARKNGYSDEAVQALWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H++AY +++Y TA++K ++P E++AA +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSSAYGLVTYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCS 870
             I+++PP+VN    +F   GD+ I + L+A++ VGT     I+        + S  DF  
Sbjct: 829  GIKVLPPNVNESQSNFAAQGDDVILFGLSAVRNVGTNVVESIIRCRKSKGKYSSFPDFLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +V+    N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F   
Sbjct: 889  KVEVVVCNKRTVESLIKAGAFDELGHTRKGLVAHHEPMIDNVVAVKRKEAEGQFDLFGGM 948

Query: 931  KGTFSDKITL---EKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                +D+       +FS      S     E+ +LG Y S HPL   + +L         +
Sbjct: 949  GDDSADEPGFGLDVEFSDVEWEKSYLLAQEREMLGLYVSDHPLFGIEHVLSDKSDASISQ 1008

Query: 986  SV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1009 LTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|228471624|ref|ZP_04056398.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC
            33624]
 gi|228277043|gb|EEK15729.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC
            33624]
          Length = 1484

 Score = 1002 bits (2592), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1094 (33%), Positives = 568/1094 (51%), Gaps = 85/1094 (7%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-- 61
             L +S  F HL  HS +S+L+   S++++++  A +Q PA+A+TD  N+  A  F+++  
Sbjct: 249  ALLQSAPFAHLHNHSQHSVLQSTASISDLVNAAAKEQMPAVALTDHGNMMGAFHFTKEVA 308

Query: 62   ------------ACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
                        A   G       ++PIIGC+        +   +  KT       IVLL
Sbjct: 309  KYNKEAKAKNARAQEEGNAPTHTLLKPIIGCEFY------VCENHLDKTKKDNGYQIVLL 362

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
                EGYQ LI++ S  Y         RI    +Q    + +I L+G   G I       
Sbjct: 363  AKNKEGYQNLIKMASIAYTEG-FYYVPRIDKEIVQRYKDQ-VIALSGNLQGEIPSKILNQ 420

Query: 163  SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLS 221
             ++ AE+ LL +K+LF D  Y+ L RH   D  R  + +++LA  H + LVATNN+ +++
Sbjct: 421  GNRQAEEALLWWKELFQDDFYIELMRHGQEDENRANTVLIELAKKHAIKLVATNNTYYIN 480

Query: 222  EEDYEAHDVLMAVAHSTVVSQ---KDRPRVTP----DHYLKNRSEMVSIFSDLPEALENT 274
             +D  AHD+L+ V      +    + R         ++Y K+  +M  +F D+PEA+ + 
Sbjct: 481  PKDANAHDILLCVKDGEKQATSIGQGRGFRNGLPNEEYYFKSSEQMKELFKDIPEAILSI 540

Query: 275  VEIARRCSFILQVHAPILPRFIEK------ECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
             EI  + +        +LP+F         +    +K E   LR+    G E R  +   
Sbjct: 541  QEIIDKITPYELARDILLPKFSIPKEFQVEDDPTGKKGENKYLRHLTYIGAEKRYKE--- 597

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                   + R+R+DFEL++I +  + GYFLIV DFI  A+   + VGPGRGS AGS  AY
Sbjct: 598  ----LTDEIRERIDFELSIIEKTGYPGYFLIVEDFITAARNMGVSVGPGRGSAAGSAVAY 653

Query: 389  ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
             L IT+IDP+ + LLFERFLNPDR+SMPD DIDF  D R  V+ YV  KYG  +VAQI T
Sbjct: 654  CLGITNIDPIAYDLLFERFLNPDRVSMPDIDIDFEDDGRGRVLDYVIGKYGANQVAQIST 713

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD--DSRFREARLAD- 505
            +G++ AK+++RD  R L +P    D++ KL+PN     +SL+ I    D   +E   +D 
Sbjct: 714  YGTMAAKSSIRDTARVLDLPLKDADQIAKLVPN-----ISLKKIFSLPDEELKEKVGSDF 768

Query: 506  PSVDRLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
            P V  L +I+Q              LEG  R+   HA G++I    ++  VP+     SD
Sbjct: 769  PKVTELKKIAQGHDLAAKTVQQACILEGSVRNTGIHACGVIITPDDITNFVPVMLAKDSD 828

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHL 611
            L VTQF+   +E AGL+K DFLGLKTLT+L+ ++  + +R  + +D+  IP DD  TY L
Sbjct: 829  LFVTQFDNSVVESAGLLKMDFLGLKTLTILKDAVSLIQKRHNITLDIEEIPLDDVPTYEL 888

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                 T+GIFQ ES GM++ +  ++P    D+IA+ +LYRPGP+D I  + +RK+GKE I
Sbjct: 889  FQRGETIGIFQYESPGMQKHMRELKPTVFGDLIAMNALYRPGPMDYIPSFIHRKHGKEPI 948

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
                  ++  LK+T G+ +YQEQVM ++Q L+G++  EAD LR+AMGKK+K+ + + K +
Sbjct: 949  TYDLADMEEYLKDTYGITVYQEQVMLLSQKLAGFTKGEADKLRKAMGKKLKDVLAEMKPK 1008

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            FI G  K G        I++    FA Y FNKSH+  YA I+YQTA++K +YP EF+AA 
Sbjct: 1009 FIEGGGKKGHPAETLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKANYPAEFMAAV 1068

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTA 850
            ++  M++++ I  F  +  +  I+++ P VN     F V     I + + A+KG+G    
Sbjct: 1069 LSNNMNDIKSISFFLSECHRMGIKVLSPDVNESEYKFTVNKEGAIRFGMGAVKGLGKAAV 1128

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS----- 904
              I+E     P+ S+ D   R+D K  N++  ESLV AG  D F    R Q         
Sbjct: 1129 DTIVETRKSGPYKSVFDMVKRIDLKSANKKAFESLVLAGGFDSFPEVHRAQFFHQEPSEN 1188

Query: 905  ---LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               L+ I +Y    +++  +   ++F     T   +  + K    +   +   E+ V+G 
Sbjct: 1189 MVFLEKILRYGAKAQESAKSIQLSLFGDSPETQFPEPKMPKTEEWSPMEKLHREKEVVGI 1248

Query: 962  YFSGHPLDVYKPILRKMG---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            Y SGHPLD++   L+ +    +    E +       +R   ++   + K ++ G   G  
Sbjct: 1249 YISGHPLDIFHYQLKYLCNKEVIELAEGIERFENQEVRFGGIITKIEHKTSKTGKGWGLF 1308

Query: 1019 TFSEPAKEYEANFF 1032
            T  + +   E   F
Sbjct: 1309 TIEDYSGGAEFRIF 1322


>gi|158314206|ref|YP_001506714.1| DNA polymerase III subunit alpha [Frankia sp. EAN1pec]
 gi|158109611|gb|ABW11808.1| DNA polymerase III, alpha subunit [Frankia sp. EAN1pec]
          Length = 1178

 Score = 1002 bits (2592), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1065 (34%), Positives = 570/1065 (53%), Gaps = 52/1065 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA  L ++ ++++    PA+AITD   ++ A +F ++A AAG++P
Sbjct: 4    SFVHLHVHTEYSMLDGAARLKDMFNEVSRQGMPAVAITDHGYMYGAYDFYKQATAAGVKP 63

Query: 70   IIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIGC+  +  +  L             +   +   +   + +    AEG   L  L SR 
Sbjct: 64   IIGCEAYVAPESRLLKQRVRWGEPHQKSDDVSGGGSYTHMTIWARNAEGLHNLFRLNSRA 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF- 178
             +     +  R+    + E    GL+  TG  SG +           A K   T+++++ 
Sbjct: 124  SIEGHYIKWPRMDQEIISE-HAAGLMATTGCPSGEVQTRLRLGQYDAALKAAATYQEIYG 182

Query: 179  GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  Y  +  H    +R     +V +A   ++  V TN+S +  E +   H  L+ V  +
Sbjct: 183  RDNYYCEIMDHGIEIERRVRDGLVDIARALDMRFVVTNDSHYTYESERTTHAALLCVQTA 242

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQV-HAPILPR 294
            + V+          ++LK+  +M +I       +  E T+ IA R           ++PR
Sbjct: 243  STVANPSFQFEGSGYFLKSAEQMYAIDTSDAWQQGCETTLMIAERVDPAGMFTKQNLMPR 302

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            F   E +     +E+  R +  AG+  R   G        +++R R+++EL VI  M F 
Sbjct: 303  FPVPEGE----TDESWFRKETWAGMARRFPDGFD------EEHRARVEYELGVILAMGFP 352

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFL+VADFI WAK   IPVGPGRGS AGS+ A+AL ITD+DP+  SLLFERFLNPDR+S
Sbjct: 353  SYFLVVADFIMWAKSQGIPVGPGRGSAAGSMVAFALGITDLDPIPHSLLFERFLNPDRVS 412

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD DIDF + RR +VIRYV  K+G +R+AQI+T+G+++AKAA++D  R L  PY+  DR
Sbjct: 413  MPDIDIDFDERRRGDVIRYVTEKWGDDRIAQIVTYGTIKAKAAIKDSSRVLGYPYAVGDR 472

Query: 475  LCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHA 525
            + K +P       + L  I D            R    +D  V ++++ ++ LEGL R A
Sbjct: 473  ITKAMPPAVMGKDIPLGGIFDPKHPRYSEAGEIRGLYESDADVRKVIDTAKGLEGLIRQA 532

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
              HAAG+++   P+   +P++R       +TQF+    E  GL+K DFLGL+ LT++  +
Sbjct: 533  GVHAAGVIMSAEPIIDHIPVWRRDADGAIITQFDYPTCENLGLLKMDFLGLRNLTVMDDA 592

Query: 586  LDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            +  + A RG K+DL  +  +D  +Y LL    TLG+FQL+   MR  L  M+PD  EDI 
Sbjct: 593  VRNVEANRGFKIDLMGLELNDAASYELLARGDTLGVFQLDGGPMRSLLRMMRPDNFEDIS 652

Query: 645  ALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVMQI 698
            A+++LYRPGP+  ++ + Y  RKNG+++I  IHP +      +L  T G+I+YQEQVM I
Sbjct: 653  AVLALYRPGPMGANSHINYALRKNGQQEITPIHPELAEPLADILDTTHGLIVYQEQVMAI 712

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ ++GY+L +AD+LRRAMGKK KE +DK+   F  G   +G S+     ++++L  F+D
Sbjct: 713  AQKVAGYTLGQADLLRRAMGKKKKEILDKEFVPFSDGMKSSGFSEAAIKTLWDILVPFSD 772

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            Y FNK+H A Y ++SY TA++K ++P E++AA +T   D+ +K   +  + R+  I+++P
Sbjct: 773  YAFNKAHTAGYGLVSYWTAYLKANFPAEYMAALLTSVRDDKDKSAIYLNECRRMGIRVLP 832

Query: 819  PSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKK 876
            P VNT   D+   GDN I   LAAI+ VG      I+     K  F S  DF  +VD+  
Sbjct: 833  PDVNTSDADYTAHGDNEIRVGLAAIRNVGINVVESIVRNRKTKSRFTSFPDFLDKVDAVA 892

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             N+R +ESL+ AGA D  G++R  L++  +        V+K       ++FA +     +
Sbjct: 893  CNKRTVESLIKAGAFDALGHTRRGLVEKHEQAVDAVMGVKKKNAEGQFDLFAFDGEDAEE 952

Query: 937  KIT----LEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--A 988
                   +++FS    + SV   +E+ +LG Y S HPL   + IL      G        
Sbjct: 953  DTAPIFGVQEFSDQEWDKSVLLSHEREMLGLYVSDHPLLGVEHILAAKADCGIASLNGGD 1012

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               G+ + +  ++ S Q+K T++G      T  +     E  FFP
Sbjct: 1013 YPDGSVVTIGGIISSLQRKVTKQGKLWALATVEDLEGGLEVMFFP 1057


>gi|52081424|ref|YP_080215.1| DNA polymerase III DnaE [Bacillus licheniformis ATCC 14580]
 gi|52786800|ref|YP_092629.1| DNA polymerase III DnaE [Bacillus licheniformis ATCC 14580]
 gi|52004635|gb|AAU24577.1| DNA polymerase III (alpha subunit) [Bacillus licheniformis ATCC
            14580]
 gi|52349302|gb|AAU41936.1| DnaE [Bacillus licheniformis ATCC 14580]
          Length = 1114

 Score = 1002 bits (2592), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1026 (37%), Positives = 584/1026 (56%), Gaps = 36/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQVHS YSLL  A S+ ++  K       A+A+TD   ++ A+EF +     GI+P
Sbjct: 2    PFVHLQVHSGYSLLNSAASVEDLTAKAKELGYSAMALTDDEVMYGAVEFYKSCKKRGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            II           L  +            +VLL  T +GYQ L+++ S +    Q K   
Sbjct: 62   II----------GLTASVLTDEKEQLSYPLVLLAKTNKGYQNLLKISSVL----QSKSKT 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
             I   WL+    EGLI LT G +  ++        + A+   L    +FG+   Y++ Q 
Sbjct: 108  GIKEKWLKSYH-EGLIALTTGGTSHVEALLKEGLIEEAKDAALRCLSIFGEGSFYLSYQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            ++G D     ++++L+    +P+ AT +  ++ +ED  A+  L A+     +++  +   
Sbjct: 167  YKG-DPLLSERILELSEHTGIPIAATGDVRYIEKEDAAAYTCLKAIKAGEKLNEDMKAEG 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                 LK  +EM+ I+ D P+ALENTV+IA RC   L +    LP++         K  +
Sbjct: 226  DLHLELKPPAEMLDIYRDRPDALENTVKIADRCQVDLSLGQTRLPKYPAPSG----KNAD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L      GL+ R            ++Y +RL +EL VI  M FS YFLIV DF+++A 
Sbjct: 282  DYLAELCFLGLKKRF-------EAAPKEYVERLKYELKVIRDMAFSDYFLIVWDFMKFAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N I  GPGRGS AGS+ AY L ITD+DPL+  LLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 335  DNGIITGPGRGSAAGSLVAYTLFITDVDPLKHKLLFERFLNPERISMPDIDIDFPDTRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YV+NKYG   VAQI TFG+L AKAALRDVGR + +   + D+L KLIP+ P   + 
Sbjct: 395  EVIQYVKNKYGALHVAQITTFGTLAAKAALRDVGRVMGISPKEADQLAKLIPSKPGVTLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A A      +       +  + + +QK+EGL RH S HAAG+V+ + PL+ ++P+  +
Sbjct: 455  -EARALSPELDKRLNGSKKLQDIFKTAQKIEGLPRHTSIHAAGVVLSEEPLTNIIPVQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
                + +TQ++M ++E  GL+K DFLGL+ LTL++     + +   V +D S IP+DD +
Sbjct: 513  GHGGVYLTQYSMGYLEDLGLLKMDFLGLRNLTLIESIKTLIEKSERVTIDFSAIPYDDEQ 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T GIFQLES+GMR  L+ ++P  +EDI+A+ +LYRPGP++NI +Y  RK+G
Sbjct: 573  TFKLLAEGDTTGIFQLESAGMRNVLKRLKPSSLEDIVAVNALYRPGPMENIPLYIERKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +  +   H  +  +LK+T GVI+YQEQ+M IA  ++G+ L EAD+LRRA+GKK KE +D 
Sbjct: 633  RVPVSYPHEDLADILKDTYGVIVYQEQIMMIASRMAGFRLGEADLLRRAVGKKNKEILDT 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  FISG  K G S   A  +++L+ KFA+YGFN+SHA AY++I YQ A++K HYP+ F
Sbjct: 693  ERNHFISGCLKKGYSVQAANEVYDLIVKFANYGFNRSHAVAYSMIGYQLAYLKAHYPLYF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N EK+ ++  +A+   + ++ PS+N     F V +  + YSL A+KGVG 
Sbjct: 753  MCGLLTSAIGNEEKLAQYIYEAKGKGLNVLGPSINKSGYPFVVENGALRYSLRAVKGVGI 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               + I  A  +KPF  L DFC R   K +NR+ +E+L+FAGA+D FG +R  LL S+D 
Sbjct: 813  AAVKEIYRARKEKPFADLFDFCVRTSVKSVNRKTIEALIFAGAMDEFGENRATLLASVDV 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++A+    +  N     F  E  T   K    +           +E+  LG YFS HP
Sbjct: 873  ALEHAELFAGD--NDQLGFFLDEGLTI--KPKYAETEEMPLVDLLAHEKETLGIYFSDHP 928

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L V++  L + G     + +A+ R     L  ++   +  +T+ G  + ++  S+ + E 
Sbjct: 929  LSVHRKKLDRAGALPIIQLLASGR-KKAALGGLLTRMKTIRTKTGQTMAFLELSDESGEM 987

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 988  EAVVFP 993


>gi|256825465|ref|YP_003149425.1| DNA polymerase III subunit alpha [Kytococcus sedentarius DSM 20547]
 gi|256688858|gb|ACV06660.1| DNA polymerase III, alpha subunit [Kytococcus sedentarius DSM 20547]
          Length = 1183

 Score = 1002 bits (2592), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1068 (33%), Positives = 542/1068 (50%), Gaps = 55/1068 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             + +FVHL  H+ YS+L+GA  ++++         PAIA TD  ++F A EF  K+    
Sbjct: 6    SAENFVHLHNHTEYSMLDGAARIDDMFTVADEMGMPAIASTDHGSVFGAYEFWSKSRKFE 65

Query: 67   IQPIIGCQLDIDMQD------NLKMTNQGKTPF---PTVPSIVLLVSTAEGYQRLIELVS 117
             +PI+G +  +           +K  + G+           + +   T EG   L    S
Sbjct: 66   TKPIVGVEAYLTPGTHRTDKTRVKFGDGGRNDVSGSGAYTHMTMWAETTEGMHNLFRASS 125

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +        R+    L   G +G+I  TG  SG +           A++    F+ +
Sbjct: 126  LASIEG-FYFKPRMDRELLDRYG-KGIIATTGCPSGEVQTRLRLGQYDKAKEAAAEFRDI 183

Query: 178  F-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  D  +  L  H    +R   + +++LA   +LPLVATN+  +  +ED +AH  L+ V 
Sbjct: 184  FGKDNFFCELMDHGLDIERQVRADLLKLAKELDLPLVATNDLHYTHKEDAKAHGALLCVQ 243

Query: 236  HSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP-ILP 293
              + +   +R +   D  YLK+ +EM  ++ ++PEA +NT+ IA RC+          +P
Sbjct: 244  SGSTLMDPNRFKFDSDEFYLKSAAEMRHLWREVPEACDNTLLIAERCNVEFTEGEGRYMP 303

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            RF   +  D    E +   ++   GL  R  +G            ++  +E +VI    +
Sbjct: 304  RFPCPDGHD----ETSWFISEVQTGLARRFPEGVPDYA------LKQAAYEQDVIINKGY 353

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD+DP+   L+FERFLNP+R 
Sbjct: 354  PGYFLVVADFINWAKENGIRVGPGRGSGAGSMCAYAMGITDLDPIPHGLIFERFLNPERA 413

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPDFD+DF + RR EVI+YV  KYG +RVA I+T+G+++AK AL+D  R +  P++  +
Sbjct: 414  SMPDFDVDFDERRRPEVIKYVTEKYGSDRVAMIVTYGTIKAKQALKDASRVMGFPFATGE 473

Query: 474  RLCKLIPND-PAHPVSLQAIADDSR--------FREARLADPSVDRLLEISQKLEGLYRH 524
            +L K +P       + L  I D+          FRE    DP    + + +  LEGL R 
Sbjct: 474  KLTKAMPPAVMGKDIPLSGIFDEKHPRYAEAIDFRELHANDPEAREVFDTAVGLEGLKRQ 533

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HAAG+++   PL  L+P+ R       +TQF+    E  GL+K DFLGL+ LT+L  
Sbjct: 534  WGVHAAGVIMASEPLIDLIPIMRREADGQIITQFDYPSCETLGLVKMDFLGLRNLTILDD 593

Query: 585  SLDFLA-QRGVKVDLSLIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++  +   R   +DL  +  D  D   Y LL    TLG+FQL+  GMR  L  MQPD  E
Sbjct: 594  AIANIEMNREETIDLDALSKDMTDPAAYKLLARGDTLGVFQLDGGGMRSLLRLMQPDNFE 653

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQEQV 695
            DI A ++LYRPGP+  +    +  RKNGK+ +  IHP +    +P+LK T G+IIYQEQV
Sbjct: 654  DISAALALYRPGPMGANAHTNFALRKNGKQPVDYIHPELTEALEPILKMTYGLIIYQEQV 713

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M+IAQ L+GY+L  AD+LRRAMGKK KE +D +   F +G   NG SK     ++ +L  
Sbjct: 714  MEIAQKLAGYTLGNADLLRRAMGKKKKEVLDAEYVNFEAGMLANGYSKDAVETLWGILLP 773

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            F+DY FNK+H AAY V+SY TA++K +Y  E++AA +T   D+ +K   +  + R+  I+
Sbjct: 774  FSDYAFNKAHTAAYGVVSYWTAYLKANYRAEYMAALLTSVRDDKDKSALYLGECRRMGIK 833

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            ++PP VN    +F      I + L AI+ VG    R I+    +   F S EDF  +  +
Sbjct: 834  VLPPDVNESIANFAAVGQDIRFGLEAIRNVGGNVVRAIVATREEKGKFTSFEDFLRKCPA 893

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
               N+R ++SL+ AGA D  G+ R  L    +         +K +    E++FA   G  
Sbjct: 894  VVCNKRTIDSLIKAGAFDDLGHQRQALATVHEAYVDALVGEKKEQERGQESLFASLMGDG 953

Query: 935  SDK-------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
             D          +      +       E+ +LG Y S HPL   +  L +          
Sbjct: 954  GDDASSIGGMPAIPDL-EWDKQTLLAFEREMLGLYVSDHPLFGIEHALSRASDTSIAHLN 1012

Query: 988  A---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +      G  + +A ++     K+ ++G      T  +     E  FF
Sbjct: 1013 SEDGRPDGAEVTIAGLITQVVTKRNKRGELWAIATVEDLEGSIECLFF 1060


>gi|319647332|ref|ZP_08001554.1| DnaE protein [Bacillus sp. BT1B_CT2]
 gi|317390679|gb|EFV71484.1| DnaE protein [Bacillus sp. BT1B_CT2]
          Length = 1127

 Score = 1002 bits (2591), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1026 (37%), Positives = 584/1026 (56%), Gaps = 36/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQVHS YSLL  A S+ ++  K       A+A+TD   ++ A+EF +     GI+P
Sbjct: 15   PFVHLQVHSGYSLLNSAASVEDLTAKAKELGYSAMALTDDEVMYGAVEFYKSCKKRGIKP 74

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            II           L  +            +VLL  T +GYQ L+++ S +    Q K   
Sbjct: 75   II----------GLTASVLTDEKEQLSYPLVLLAKTNKGYQNLLKISSVL----QSKSKT 120

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
             I   WL+    EGLI LT G +  ++        + A+   L    +FG+   Y++ Q 
Sbjct: 121  GIKEKWLKSYH-EGLIALTTGGTSHVEALLKEGLIEEAKDAALRCLSIFGEGSFYLSYQP 179

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            ++G D     ++++L+    +P+ AT +  ++ +ED  A+  L A+     +++  +   
Sbjct: 180  YKG-DPLLSERILELSEHTGIPIAATGDVRYIEKEDAAAYTCLKAIKAGEKLNEDMKAEG 238

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                 LK  +EM+ I+ D P+ALENTV+IA RC   L +    LP++         K  +
Sbjct: 239  DLHLELKPPAEMLDIYRDRPDALENTVKIADRCQVDLSLGQTRLPKYPAPSG----KNAD 294

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L      GL+ R            ++Y +RL +EL VI  M FS YFLIV DF+++A 
Sbjct: 295  DYLAELCFLGLKKRF-------EAAPKEYVERLKYELKVIRDMAFSDYFLIVWDFMKFAH 347

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N I  GPGRGS AGS+ AY L ITD+DPL+  LLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 348  DNGIITGPGRGSAAGSLVAYTLFITDVDPLKHKLLFERFLNPERISMPDIDIDFPDTRRD 407

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YV+NKYG   VAQI TFG+L AKAALRDVGR + +   + D+L KLIP+ P   + 
Sbjct: 408  EVIQYVKNKYGALHVAQITTFGTLAAKAALRDVGRVMGISPKEADQLAKLIPSKPGVTLK 467

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A A      +       +  + + +QK+EGL RH S HAAG+V+ + PL+ ++P+  +
Sbjct: 468  -EARALSPELDKRLNGSKKLQDIFKTAQKIEGLPRHTSIHAAGVVLSEEPLTNIIPVQ-E 525

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
                + +TQ++M ++E  GL+K DFLGL+ LTL++     + +   V +D S IP+DD +
Sbjct: 526  GHGGVYLTQYSMGYLEDLGLLKMDFLGLRNLTLIESIKTLIEKSERVTIDFSAIPYDDEQ 585

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T GIFQLES+GMR  L+ ++P  +EDI+A+ +LYRPGP++NI +Y  RK+G
Sbjct: 586  TFKLLAEGDTTGIFQLESAGMRNVLKRLKPSSLEDIVAVNALYRPGPMENIPLYIERKHG 645

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +  +   H  +  +LK+T GVI+YQEQ+M IA  ++G+ L EAD+LRRA+GKK KE +D 
Sbjct: 646  RVPVSYPHEDLADILKDTYGVIVYQEQIMMIASRMAGFRLGEADLLRRAVGKKNKEILDT 705

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  FISG  K G S   A  +++L+ KFA+YGFN+SHA AY++I YQ A++K HYP+ F
Sbjct: 706  ERNHFISGCLKKGYSVQAANEVYDLIVKFANYGFNRSHAVAYSMIGYQLAYLKAHYPLYF 765

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N EK+ ++  +A+   + ++ PS+N     F V +  + YSL A+KGVG 
Sbjct: 766  MCGLLTSAIGNEEKLAQYIYEAKGKGLNVLGPSINKSGYPFVVENGALRYSLRAVKGVGI 825

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               + I  A  +KPF  L DFC R   K +NR+ +E+L+FAGA+D FG +R  LL S+D 
Sbjct: 826  AAVKEIYRARKEKPFADLFDFCVRTSVKSVNRKTIEALIFAGAMDEFGENRATLLASVDV 885

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++A+    +  N     F  E  T   K    +           +E+  LG YFS HP
Sbjct: 886  ALEHAELFAGD--NDQLGFFLDEGLTI--KPKYAETEEMPLVDLLAHEKETLGIYFSDHP 941

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L V++  L + G     + +A+ R     L  ++   +  +T+ G  + ++  S+ + E 
Sbjct: 942  LSVHRKKLDRAGALPIIQLLASGR-KKAALGGLLTRMKTIRTKTGQTMAFLELSDESGEM 1000

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 1001 EAVVFP 1006


>gi|124002816|ref|ZP_01687668.1| DNA polymerase III alpha subunit [Microscilla marina ATCC 23134]
 gi|123992044|gb|EAY31431.1| DNA polymerase III alpha subunit [Microscilla marina ATCC 23134]
          Length = 1403

 Score = 1002 bits (2591), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1051 (35%), Positives = 572/1051 (54%), Gaps = 43/1051 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL VHS +S+L+   S+  ++        PAIA TD  N+ +A +   +     ++ 
Sbjct: 239  PFSHLHVHSQFSILQSTASVGGLIKFAKEHGMPAIAFTDHGNMHAAFKAVGEGAKNDVKV 298

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  +  +     T   K+      + VLL    E Y RL +L S  Y+        
Sbjct: 299  IIGCEFYVAQE--RTKTKFTKSDRDRRFNQVLLAKDQEAYHRLAKLSSLGYIEGYYAGFP 356

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    ++E   EGLI LTG   G I           AE+    +  LFGD  YV + RH
Sbjct: 357  RIGKDLIEEYH-EGLIALTGNLQGEIPDLILNQGEHEAEEAFKWWHNLFGDDFYVEIMRH 415

Query: 190  RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-- 246
               +  R ++ +++ A  + +  +ATNN  ++ +ED +AHD L+ V  +   S       
Sbjct: 416  GQEEEERVNEVLLKFAAKYGVKPIATNNVYYIGDEDADAHDSLLCVKGADKKSTPKMFTP 475

Query: 247  ----------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
                          ++Y+K   EM  +FSD+P ALE T EI  +CS I      ++P + 
Sbjct: 476  DIKRRNLRYGMPNEEYYMKTPEEMNELFSDIPIALETTQEIVDKCSPIKLKRDILMPVY- 534

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E       +++ LR+    G   R        G   ++ R+RLD ELN+I  M F GY
Sbjct: 535  --EMPSEFATQDDYLRHLTYEGATKRY-------GEITEEIRERLDHELNIIKSMGFPGY 585

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV DFI  A+   + VGPGRGS AGS  A+ + IT+IDP++++LLFERFLNP+R+SMP
Sbjct: 586  FLIVQDFINAARDMGVFVGPGRGSAAGSAVAFCIGITNIDPIKYNLLFERFLNPERVSMP 645

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D DIDF  + R + I YV +KYG  +VAQIIT+G++ AK A++DV R L++P    ++L 
Sbjct: 646  DVDIDFDDEGRQDAINYVIDKYGKNQVAQIITYGTMAAKMAIKDVARVLELPIPDSNKLA 705

Query: 477  KLIPNDPAHPVSLQAIADDSRFRE--ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            K +P+ P   +   A A+    ++  AR      +++L  ++ LEG  R    HAAG++I
Sbjct: 706  KYVPDKPGTKLK-DAFAEVQELKDVLARPEGDLENQVLRQAKILEGSVRGTGIHAAGVII 764

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
                L + +P+     +DL VTQF+ K IE AG++K DFLGLKTLT+++ +L  + +   
Sbjct: 765  APDDLLKYIPVCTSKDADLLVTQFDGKVIEDAGMLKMDFLGLKTLTVIKDALRMIKKNYD 824

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            + +D+  IP DD  T  L     T+G FQ ES GMR  L+ ++P  IED+IA+ +LYRPG
Sbjct: 825  IDIDMDKIPLDDQATLELYQNGETVGTFQFESEGMRMYLKQLKPTNIEDLIAMNALYRPG 884

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+  I  + NRK+G E++   H L++P+L  T G+++YQEQ+MQ AQ+L GYSL  AD+L
Sbjct: 885  PLQFIPNFINRKHGTEEVEYPHDLLEPILNNTYGIMVYQEQIMQTAQILGGYSLGGADLL 944

Query: 714  RRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAMGKK  EEMD+Q+  F+ GA + +GI +  +  +FE++ +FA YGFN+SH+AAY+V+
Sbjct: 945  RRAMGKKKLEEMDRQEVIFMKGAKEIHGIPEEKSRKVFEVMKEFAKYGFNRSHSAAYSVV 1004

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTA++K +YP E++A+ +T  M+N++K+  F  + +   +QI+ P VN     F V  
Sbjct: 1005 AYQTAYLKANYPSEYMASVLTHNMNNIDKVTFFIDETKNMGLQILGPDVNESEQSFTVNP 1064

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
              +I + L A+KG G     +I+E    + PF  + DF  RV+ + +N++  E    AGA
Sbjct: 1065 VGQIRFGLGAVKGTGDAAVENIIEERKKNGPFKDMFDFARRVNLRTVNKKSFECFAQAGA 1124

Query: 891  LDCFG-YSRMQLLQS--------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
             D  G   R Q   +        L+ I K+    +K   N   ++F         +  + 
Sbjct: 1125 FDNLGKLHRAQFFAAMPNDTATFLERIIKFGNAYQKEIENAKTSLFGASGAVTIAQPKVP 1184

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                 +   +   E+ V+GFY SGHPLD Y+  ++K G     + + + +   + +A +V
Sbjct: 1185 YTEPWSQLEKLNREKEVVGFYMSGHPLDRYRAGMKKFGAVAL-DKIESFQHQEVTVACIV 1243

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              K+ ++T+ G      +  + +   +   F
Sbjct: 1244 TKKELRQTKNGKPFTSFSIEDYSTSMDLALF 1274


>gi|317057698|ref|YP_004106165.1| DNA polymerase III subunit alpha [Ruminococcus albus 7]
 gi|315449967|gb|ADU23531.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7]
          Length = 1141

 Score = 1002 bits (2591), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1039 (34%), Positives = 569/1039 (54%), Gaps = 38/1039 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +HS YSLL+GA  ++ +  ++    Q A A+TD  N+F+A+EF     AAGI+P
Sbjct: 3    DFVHLHLHSEYSLLDGACRIDRLAARLKEVGQTACAVTDHGNMFAAIEFYNTMRAAGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +         ++   P+     ++LL     GY+ LI++VS  Y         
Sbjct: 63   ILGCEVYVARGSREDKDHREGKPY----HLILLCENETGYRNLIKMVSLGYTEG-FYSRP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI L  L++    GLI L+G  +G +       + + AE+  L ++ +F  D  ++ +Q+
Sbjct: 118  RIDLELLRKYHD-GLICLSGCVAGELSTKIANGNYKGAEETALLYRDIFGADNYFIEIQK 176

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR   ++     +++L+    +PL  TN+  +L  ED +A  VLM ++ +T         
Sbjct: 177  HRDPVEQRVMPSLIRLSQDTGIPLCLTNDCHYLRREDSQAQQVLMCISTATTTDDPAISF 236

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + + Y+K+  EM  ++  +PEA+ NTV IA RC   ++  + +LP F      D   + 
Sbjct: 237  ASDEFYVKSAEEMAELYPAIPEAMLNTVRIADRCDVEIKFGSTVLPYF----GIDGVSDN 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LRN    GL  R  +        +++  +R+++EL+VI  M ++ Y+LIV DFI +A
Sbjct: 293  AAYLRNMCREGLYRRYDE-------PSEEALERMEYELSVINGMGYTDYYLIVWDFINYA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K ++IPVGPGRGSGAGS+ AY + ITDIDPLR+ LLFERFLNP+R++MPDFDIDFC + R
Sbjct: 346  KSHDIPVGPGRGSGAGSLCAYCIGITDIDPLRYDLLFERFLNPERVTMPDFDIDFCVEGR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
              VI YV  KYG + VAQI TFG+L AK ALRD  RA+  PY+  DRL K  P       
Sbjct: 406  QRVIDYVVEKYGADHVAQIATFGTLGAKQALRDAARAMGEPYATGDRLAKAAPRSMLLSD 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            S++ I      R+   +D  + ++++ +  +EG+ R+ STHAAG+VI   P+   VP+Y 
Sbjct: 466  SVEKI---PELRDMYNSDMKLRKIIDTAILIEGMPRNVSTHAAGVVITKEPVDFYVPLY- 521

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
              R     TQ+ M  +E+ GL+K DFLGL  LT+++   D + +     D+  IP DD  
Sbjct: 522  -ARDGAVSTQYTMTVLERLGLLKIDFLGLSNLTIIKHCCDEIKKTHPDFDIEHIPLDDKA 580

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             Y +L+   T G+FQ ES GM   +  ++P  IED+IA++SLYRPGP+D+I  Y   ++ 
Sbjct: 581  VYDMLSRGETEGVFQFESGGMTATIMKLRPSGIEDLIAVLSLYRPGPMDSIPNYIRCRHD 640

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             + +   HP++ P+L+ T G I+YQEQVMQI + L+GYS + AD++RRAM KK  + ++ 
Sbjct: 641  PKLVRYKHPMLKPILEVTYGCIVYQEQVMQIFRSLAGYSFARADLVRRAMSKKKADVLEN 700

Query: 728  QKERFISGASK------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +++ F+ G  +      NG+ +  A +IF+ +  FA Y FNKSHA AYA ++Y+TA++K 
Sbjct: 701  ERKAFVWGDEEVCGAVANGVPEKTANDIFDEMTSFASYAFNKSHATAYATVAYRTAYLKC 760

Query: 782  HYPVEFLAASMTLEMD-NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
            H+  E+ ++ MT  ++ + EK+  +   AR+  + ++PP +N     F    + I + L 
Sbjct: 761  HFFKEYFSSLMTDAINESTEKLYGYISAARKRGVAVLPPDINKSIGGFSGEGDSIRFGLL 820

Query: 841  AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IKG+G+ +   I+        F +L+DFC R+  + ++ + +E+L+ AGA+D    +R 
Sbjct: 821  GIKGLGSNSIAAIIRERTLGGDFLNLQDFCRRMQGRDIHTKAVEALIKAGAMDPLPLNRH 880

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            + L +   I         +R     + F      G   DK  ++   + +  +       
Sbjct: 881  EKLINCGIIMGDLSRAASDRLEGQLDFFGSGGASGDGLDKPMIDAEELTSEELLLYE-HE 939

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVAT---IRGNNIRLAAMVVSKQQKKTRKGSR 1014
             LG Y S HP+D  +P  R  G       +       G    +  MV  K+   T+KG  
Sbjct: 940  ALGMYLSAHPIDTCEPFARAAGFTSVRTILEAGLKGEGRTADILVMVTRKRSIATKKGDM 999

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + +    +   E E   FP
Sbjct: 1000 MCFAACEDKTGEMEVIVFP 1018


>gi|289662892|ref|ZP_06484473.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv.
            vasculorum NCPPB702]
          Length = 1196

 Score = 1002 bits (2591), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1083 (38%), Positives = 603/1083 (55%), Gaps = 80/1083 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHAN-LFAL-AGRDSLAGRLFSEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+ A+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGRDGEERFNQFALNAAGVRGLPVAASNDVRFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   Y+K+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTYALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E + +    ++ +R+++  GL  RL +  +A G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPEDETL----DSWIRSQSRDGLAARLEKSPLAPGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLY 522
              VD + KLIPN     +   A+ +            +    +  V  L++++++LE L 
Sbjct: 464  GLVDSVAKLIPNILGITLK-DAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523  RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+T
Sbjct: 523  RNAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582

Query: 579  LTLLQKSLDFLAQRGV-----KVDLSLIPFDDHETYHL-LTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  +  R        VD++ IP DD  TY     +  T  +FQ ESSGMR+ L
Sbjct: 583  LTIIDWAVKAINVRHARAGIDPVDITTIPLDDMPTYKGVFASGSTGAVFQFESSGMRRLL 642

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQ
Sbjct: 643  KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEAILKDTYGIMVYQ 702

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703  EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             + + PP VN     F+        Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 823  GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883  RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 931  KGTFSDK-ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------ 983
              +     + L +            E+  LGFY SGHP D ++  +R++           
Sbjct: 943  DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKI 1002

Query: 984  --------------EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                           E  A     +  +A  V+  ++    KG    +V   +     E 
Sbjct: 1003 LASQQRGGGGGGGDGEKRAWRPEVSAIVAGQVIGVRR----KGDSQVFVQLEDGRGRVEC 1058

Query: 1030 NFF 1032
            + F
Sbjct: 1059 SAF 1061


>gi|257066179|ref|YP_003152435.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
 gi|256798059|gb|ACV28714.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
          Length = 1148

 Score = 1002 bits (2591), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1050 (34%), Positives = 583/1050 (55%), Gaps = 46/1050 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G   ++ +LD+       ++AITD   ++  +EF ++A   GI+PI
Sbjct: 5    FTHLHVHTEYSLLDGFSRIDLLLDRAKELGMDSLAITDHGQMYGVIEFYKQAKKRGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +   D+       +        ++LL    +GY+ LI++VS  Y+ +      R
Sbjct: 65   IGCEVYVSENDHTIKEASNRR----YYHLILLAKNMDGYKNLIKIVSEAYV-NGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            +   ++++  +E +I L+   +G + +    N  + A++    +++ F     Y+ LQ H
Sbjct: 120  VSFDFIKKY-SEDIIALSACLNGEVSQRLIENDYESAKETAQRYEEAFGKGNFYLELQNH 178

Query: 190  RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
               ++   ++ + ++    ++PLVATN+  ++++ED    DVL+ +    +V  +DR   
Sbjct: 179  GIKEQNIVNRGLARIHEEEDIPLVATNDIHYINKEDAYYQDVLLCIQTGKLVKDEDRMKM 238

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YLK+ +EM  +F     A+ENT +IA +C+     H P LP F + E       +
Sbjct: 239  PASEFYLKSYNEMKELFGAYQGAIENTQKIADQCNVEFTFHEPHLPYFTKVEE---GLTD 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+     GL  +        G  ++  R R D E+ VIA M +  YFLIV DF+++A
Sbjct: 296  LEYLKKLVDQGLIKKY-------GSISEKIRSRADKEIKVIADMGYVDYFLIVWDFVRYA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++N+I VGPGRGS AGS+ +YAL IT IDPL++ L+FERFLNP+R+SMPD DIDF    R
Sbjct: 349  RENDIAVGPGRGSAAGSIVSYALDITQIDPLKYKLIFERFLNPERVSMPDIDIDFDYVLR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D+V+ YV   YG + V+QI+TFG +QA+ A+RDVGR L + Y++VD++ KLIP      +
Sbjct: 409  DKVVEYVNELYGRDHVSQIVTFGRMQARNAVRDVGRVLDISYAKVDKIAKLIPQAIGMTI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A    S+F+E   +D    RL++ ++K+EGL RH S HAAG+VI    L+ ++P+  
Sbjct: 469  D-KAFDSSSKFKEIYESDVEAKRLIDTARKVEGLPRHTSIHAAGVVISKEVLTDIIPL-- 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
             + +DL VTQ++M  IE+ GL+K DFLGL+ LT+++ ++  + + RG+ VDLS I  +D 
Sbjct: 526  ALSNDLVVTQYDMTEIEELGLLKMDFLGLRNLTVIKNTIKDVKKNRGIDVDLSKIDVNDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
                      T+GIFQ ES+GMR  L+ ++P   +D+IA  SL+RPGP+D I  Y + KN
Sbjct: 586  NVIDQFNNAKTIGIFQFESAGMRNFLKNLKPTVFDDLIAANSLFRPGPMDEIPKYIHNKN 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                +  I P + P+L  T G+I+YQEQVMQI Q L+GYSL EAD LRRAM KK    M+
Sbjct: 646  NPADVTFIDPALKPILDVTYGIIVYQEQVMQIVQKLAGYSLGEADNLRRAMSKKKMAVME 705

Query: 727  KQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            + +  F            I G  +NG+ ++ A  I++ +  FA Y FNKSH+AAY++++ 
Sbjct: 706  ENRGIFIKGKTDSSGNVVIPGCIRNGVDESSANQIYDEMISFAKYAFNKSHSAAYSLVAI 765

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YP E++A  ++  MD   K+  +  + +   I+++PP VN    +F V + +
Sbjct: 766  QTAYLKYYYPEEYMANLISSVMDQSSKLYLYVNETKALGIEVLPPDVNKSFAEFSVEEGK 825

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890
            I + L+ IK VG+     I++A   D  F + +DF  RV   DS+ LN++ +ESL+ AGA
Sbjct: 826  IIFGLSGIKNVGSNLIDSIVKARKKDGKFTNFKDFLQRVDEIDSRSLNKKGIESLIKAGA 885

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D   Y+R  L+   +          K       N+         + + +++ +      
Sbjct: 886  FDSLKYTRSSLMAIYEKAISAVSDNRKINVKGQLNLLDDLADKPKEDVRIQEINEFPKKT 945

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMG--IKGYEESVA-----TIRGNNIRLAAMVVS 1003
            + + E+ VLGFY S HPL      L         Y++ +       +    + +A ++ +
Sbjct: 946  KLKLEKEVLGFYISDHPLSDLGDRLGDFVNFTTDYKDHIDDTRIHLLDNKFVSMAGVITN 1005

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K +  T+K   + + T  +     E   FP
Sbjct: 1006 KSEIMTKKRQLMCFATLEDMQGSIEIVIFP 1035


>gi|41407355|ref|NP_960191.1| DNA polymerase III subunit alpha [Mycobacterium avium subsp.
            paratuberculosis K-10]
 gi|41395707|gb|AAS03574.1| DnaE1 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 1177

 Score = 1002 bits (2590), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/1067 (31%), Positives = 544/1067 (50%), Gaps = 50/1067 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S SFVHL  H+ YS+L+GA  +  +L ++     PA+ +TD  N+F A EF   A  
Sbjct: 1    MNHS-SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNAATK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AGI+PIIG +  I                       +   +   + ++   A G + L +
Sbjct: 60   AGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMVAENAAGLRNLFK 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   +G+I  TG  SG +         + A +    +
Sbjct: 120  LSSLASFEGQLGKWSRMDAELIAE-HADGIIATTGCPSGEVQTRLRLGQDREALESAAKW 178

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +++F  D  ++ L  H    ++     ++++     +P +ATN+  +++ +    H+ L+
Sbjct: 179  REIFGADNFFLELMDHGLSIEQRVRDGLLEIGRKLNIPPLATNDCHYITRDAAHNHEALL 238

Query: 233  AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAP 290
             V     +S  +R +   D +YLK+ +EM  I+ +++P A ++T+ IA R     +V  P
Sbjct: 239  CVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDAEVPGACDSTLLIAERVQSYAEVWTP 298

Query: 291  I--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +P F   E  D    + + L ++ +AGL  R   G        QDY  R ++E+ VI
Sbjct: 299  RDRMPVFPVPEGHD----QASWLHHEVMAGLRRRFPDGV------GQDYIDRAEYEIKVI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
                F  YFLIVAD I +A+  +I VGPGRGS AGS+ AYAL IT+IDP+   LLFERFL
Sbjct: 349  CDKGFPSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--Q 466
            NP+R S PD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAAL+D  R    Q
Sbjct: 409  NPERPSAPDIDIDFDDRRRGEMVRYAADKWGSDRVAQVITFGTIKTKAALKDSARIHYGQ 468

Query: 467  MPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQK 517
              ++  DR+ K +P    A  + L  I D S          R     DP V  + + ++ 
Sbjct: 469  PGFAIADRITKALPPPIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARG 528

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+
Sbjct: 529  LEGLIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLR 588

Query: 578  TLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT++  +LD +   RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQ
Sbjct: 589  NLTIIGDALDNIKANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQ 648

Query: 637  PDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVII 690
            P    DI+A+++LYRPGP+       Y +RKNG++ I  IHP ++     +L ET G+I+
Sbjct: 649  PTEFNDIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLREILAETYGLIV 708

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQ+M IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     ++
Sbjct: 709  YQEQIMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALW 768

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            + +  FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R
Sbjct: 769  DTILPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCR 828

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFC 869
            +  I ++PP VN   V+F      I + L A++ VG      +++       F    D+ 
Sbjct: 829  KLGITVLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIKTRNEKGKFTDFSDYL 888

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            +++D    N++V ESL+ AGA D   ++R  L     +        +K       ++F  
Sbjct: 889  NKIDISACNKKVTESLIKAGAFDSLKHARKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGG 948

Query: 930  EKGTFSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987
            + G      T++          +   E+ +LG Y SGHPL+    +L           + 
Sbjct: 949  DGGCTESVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTQIPAILD 1008

Query: 988  -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    +R+  ++ S  ++  + G         +     E  FFP
Sbjct: 1009 GDVPNETQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1055


>gi|296164423|ref|ZP_06846997.1| DNA-directed DNA polymerase III alpha subunit [Mycobacterium
            parascrofulaceum ATCC BAA-614]
 gi|295900205|gb|EFG79637.1| DNA-directed DNA polymerase III alpha subunit [Mycobacterium
            parascrofulaceum ATCC BAA-614]
          Length = 1181

 Score = 1002 bits (2590), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/1071 (31%), Positives = 540/1071 (50%), Gaps = 54/1071 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S SFVHL  H+ YS+L+GA  +  +L ++     PA+ +TD  N+F A EF   A  
Sbjct: 1    MNQSSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNAATK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AGI+PIIG +  I                       +   +   + ++   A G + L +
Sbjct: 61   AGIKPIIGVEAYIAPGSRFDTRRIQWGDPGQKSDDVSGSGSYTHLTMVAENATGLRNLFK 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +         + A +    +
Sbjct: 121  LSSLASFEGQLGKWSRMDAELIAE-HAEGIIATTGCPSGEVQTRLRLGHDREALESAAKW 179

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +++F  D  ++ L  H    ++     ++++     +P +ATN+  +++ +    H+ L+
Sbjct: 180  REIFGADNYFLELMDHGLSIEQRVREGLLEIGRKLGIPPLATNDCHYVTRDAAHNHEALL 239

Query: 233  AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQV--H 288
             V     +S  +R +   D +YLK+ +EM  ++ D +P A ++T+ IA R      V   
Sbjct: 240  CVQTGKTLSDPNRFKFDGDGYYLKSAAEMRRLWDDQIPGACDSTLLIAERVQPYDDVWAQ 299

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +P F   E  D    + + L ++ +AGL  R   G        QDY  R ++E+ VI
Sbjct: 300  RDRMPIFPVPEGHD----QASWLHHEVMAGLRRRFPSGV------GQDYIDRAEYEIKVI 349

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
                F  YFLIVAD I +A+  +I VGPGRGS AGS+ AYAL IT+IDP+   LLFERFL
Sbjct: 350  CDKGFPSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFL 409

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--Q 466
            NP+R S PD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAAL+D  R    Q
Sbjct: 410  NPERPSAPDIDIDFDDRRRGEMVRYAADKWGQDRVAQVITFGTIKTKAALKDSARIHYGQ 469

Query: 467  MPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQK 517
              ++  DR+ K +P    A  + L  I D            R     DP V  + + ++ 
Sbjct: 470  PGFAIADRITKALPPPIMAKDIPLSGITDPEHERYKEAAEVRGLIETDPDVRTIYQTARG 529

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+
Sbjct: 530  LEGLIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLR 589

Query: 578  TLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT++  +L+ +   RGV +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQ
Sbjct: 590  NLTIIGDALENIKANRGVDLDLESVPLDDEPTYELLGRGDTLGVFQLDGGPMRDLLRRMQ 649

Query: 637  PDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVII 690
            P    DI+A+++LYRPGP+       Y +RKN ++ I  IHP ++     +L ET G+I+
Sbjct: 650  PTEFNDIVAVLALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILSETYGLIV 709

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQ+M IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     ++
Sbjct: 710  YQEQIMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFQEGMTANGFSEKAVKALW 769

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            + +  FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R
Sbjct: 770  DTILPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCR 829

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFC 869
            +  I ++PP VN   V+F      I + L A++ VG      +++       F    D+ 
Sbjct: 830  KLGITVLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIKTRNEKGKFTDFSDYL 889

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            +++D    N++V ESL+ AGA D   ++R  L     +        +K       ++F  
Sbjct: 890  NKIDISACNKKVTESLIKAGAFDSLSHARKGLFLVHTDAVDSVLGTKKAEAIGQFDLFGG 949

Query: 930  EKGTFS-----DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
              G          I + +        +   E+ +LG Y SGHPL+    +L         
Sbjct: 950  SDGEAGCTDSVFTIKVPE-DEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQTDTQIP 1008

Query: 985  ESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +       + +R+  ++ S  ++  + G         +     E  FFP
Sbjct: 1009 AILDGDVPNESQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1059


>gi|166712747|ref|ZP_02243954.1| DNA polymerase III subunit alpha [Xanthomonas oryzae pv. oryzicola
            BLS256]
          Length = 1196

 Score = 1001 bits (2589), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1083 (38%), Positives = 607/1083 (56%), Gaps = 80/1083 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVEIDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G +    R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHAN-LFAL-AGRNSLAGRLFSEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N++ FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGREGEERFNQFALNAAGVRGLPVVASNDARFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   YLK+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E + +    ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPEDETL----DSWIRSQSRDGLAARLEKSPIAPGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  NMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLY 522
              VD + KLIPN     +   A+ +            +    +  V  L++++++LE L 
Sbjct: 464  GLVDSVAKLIPNILGITLK-DAMGEGKDSEMASPELIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523  RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+T
Sbjct: 523  RNAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582

Query: 579  LTLLQKSLDFLAQRGV-----KVDLSLIPFDDHETYHL-LTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  +  R        VD++ IP DD  TY     +  T  +FQ ESSGMR+ L
Sbjct: 583  LTIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQ
Sbjct: 643  KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEIILKDTYGIMVYQ 702

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703  EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             + + PP VN     F+        Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 823  GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883  RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 931  KGTFSDK-ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------ 983
              + S   + L +           +E+  LGFY SGHP D ++  +R++           
Sbjct: 943  DPSASAMRLDLPESKEWPLGQLLTSERETLGFYLSGHPFDPHREEVRELVGCDLGALEKI 1002

Query: 984  --------------EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                           E  A     +  LA  V+  ++    KG    +V   +     E 
Sbjct: 1003 LASQQRGGGGGGGDGEKRAWRPEVSAILAGQVIGVRR----KGDSQVFVQLEDGRGRVEC 1058

Query: 1030 NFF 1032
            + F
Sbjct: 1059 SAF 1061


>gi|325923963|ref|ZP_08185552.1| DNA polymerase III, alpha subunit [Xanthomonas gardneri ATCC 19865]
 gi|325545546|gb|EGD16811.1| DNA polymerase III, alpha subunit [Xanthomonas gardneri ATCC 19865]
          Length = 1196

 Score = 1001 bits (2589), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1083 (38%), Positives = 605/1083 (55%), Gaps = 80/1083 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ  G   L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQS-GHVNLFAL-AGRDSLAGRLFGEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   YLK+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPREYSDQQYLKSADEMAALFADVPDAIDNTHALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E + +    ++ +R++A  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPEDETL----DSWIRSQARDGLAARLEKSPIASGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLY 522
              VD + KLIPN     +   A+ +            +    +  V  L++++++LE L 
Sbjct: 464  GLVDSVAKLIPNILGITLK-DAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PLS+  P++ +          VTQF+   +E  GL+KFDFLGL+T
Sbjct: 523  RNAGKHAGGVVIAPEPLSEFCPLFAEHDEGGRGKNQVTQFDKDDVEAVGLVKFDFLGLRT 582

Query: 579  LTLLQKSLDFLAQRGV-----KVDLSLIPFDDHETYHL-LTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  +  R        VD++ +P DD  TY     +  T  +FQ ESSGMR+ L
Sbjct: 583  LTIIDWAVKAINVRHARAGIDPVDITTLPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++I+   P  + +LK+T G+++YQ
Sbjct: 643  KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIIYPDPRTEAILKDTYGIMVYQ 702

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703  EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAHKADEIFDL 762

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             + + PP VN     F+        Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 823  GLTVKPPRVNESAYMFEAATPDTIQYGLGAIKGVGQGACEAIIEERQRGGPYTTLLDFCT 882

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RV + KLNRR LE++V AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883  RVGTAKLNRRTLEAMVNAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 931  KGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------ 983
              +    ++ L +            E+  LGFY SGHP D ++  +R++           
Sbjct: 943  DPSAPALRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVRELVGCDLGALEKI 1002

Query: 984  --------------EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                           E  A     +  LA +VV  ++    KG    +V   +     E 
Sbjct: 1003 LASQQRGGGGGGGDGEKRAWRPEVSAILAGLVVGVRR----KGDSQVFVQLEDGRGRVEC 1058

Query: 1030 NFF 1032
            + F
Sbjct: 1059 SAF 1061


>gi|311742780|ref|ZP_07716589.1| DNA-directed DNA polymerase III alpha subunit [Aeromicrobium marinum
            DSM 15272]
 gi|311314408|gb|EFQ84316.1| DNA-directed DNA polymerase III alpha subunit [Aeromicrobium marinum
            DSM 15272]
          Length = 1175

 Score = 1001 bits (2589), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1065 (34%), Positives = 553/1065 (51%), Gaps = 47/1065 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL VH+ YS+L+GA  L+ + ++ A    PAIA+TD  NL  A +F  KA A
Sbjct: 1    MPSDSSFVHLHVHTEYSMLDGASLLDGLFERTAELGMPAIAMTDHGNLHGAYDFYSKARA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQ---------GKTPFPTVPSIVLLVSTAEGYQRLIEL 115
             G++PIIG +  +    +     +                   + LL  + EG   L  L
Sbjct: 61   HGVKPIIGLEAYLTPNTHRSEKKRVQWNKGGDDDVAGGGAYTHMTLLAESTEGMHNLFRL 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             SR  L  Q     R     L     +GLI  TG  SG I       + + A +    F+
Sbjct: 121  SSRSSLEGQ-YYKPRADRELLHTYA-KGLIGTTGCPSGEIQTWLRIGNYEKARESAAEFQ 178

Query: 176  KLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +F  +  ++ L  H    +      +++L     LP +ATN+S +   ED +AHD L+ 
Sbjct: 179  DIFGRENFFLELMDHGLDIETRVRDGLMRLKRDLALPAIATNDSHYTHPEDADAHDALIC 238

Query: 234  VAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQVHA 289
            V+    +S  +R +     +Y+K+ +EM S++ D   +PEA +NT+ IA RC        
Sbjct: 239  VSSGKTISDPNRLKFDGGGYYIKSAAEMRSLWEDKHEMPEACDNTLLIAERCQVEFTES- 297

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                 ++ +        EE+    +   G+  R  +        + + R+R + EL V+ 
Sbjct: 298  --NGGYMARADVPAGHTEESWFVEEVWRGIHARYGETV------SDEVRERTEMELQVVR 349

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               + GY+L+VADFI WAK N I VGPGRGSGAGS+ AYAL ITD+ PL   L+FERFLN
Sbjct: 350  DKGYCGYYLVVADFIGWAKDNGIRVGPGRGSGAGSIAAYALRITDLCPLTHGLIFERFLN 409

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R SMPDFDIDF + RR EVIRYV  KYG ERVA I TFG L++KAA++D  R L  P+
Sbjct: 410  PERPSMPDFDIDFDERRRAEVIRYVSEKYGSERVAMIATFGRLKSKAAIKDANRVLDFPF 469

Query: 470  SQVDRLCKLIPND-PAHPVSLQAIADDSR--------FREARLADPSVDRLLEISQKLEG 520
            +  +++ K +P D     V L A+ DD          FR+   AD  V ++ + +  LEG
Sbjct: 470  AMGEKITKALPADVMGKGVPLPALFDDKHSRYGDGKDFRDLHAADAEVRKIYDTALGLEG 529

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              R    HAAG+++   PL  +VP+ +  +    +TQF+    E  GL+K DFLGL+ LT
Sbjct: 530  QIRQWGVHAAGVIMSSEPLIDIVPIMKREQDGAIITQFDYPMCESLGLVKMDFLGLRNLT 589

Query: 581  LLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            +L  ++  +   RGV + L  + FDD E Y LL    TLG+FQL+   MR  L  MQPD 
Sbjct: 590  VLDDAVSNIRSNRGVDLVLEDLTFDDPEAYALLGRGDTLGVFQLDGGPMRALLRQMQPDN 649

Query: 640  IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQE 693
             EDI A+++LYRPGP+  ++ V Y  RK GK+ I  IHP +     P+L  T G+I+YQE
Sbjct: 650  FEDISAVIALYRPGPMGANSHVNYALRKTGKQPIDYIHPELTEALKPILGTTYGLIVYQE 709

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVM IAQ L+G++L +AD LRRAMGKK +E ++K+   F +G  + G SK     ++++L
Sbjct: 710  QVMSIAQELAGFTLGQADNLRRAMGKKKREVLEKEFVGFEAGMMERGYSKGAIKTLWDIL 769

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FADY FNK+H+AAY VISY TA++K  YP E++AA +T    + +K   +  + R+  
Sbjct: 770  VPFADYAFNKAHSAAYGVISYWTAYLKARYPAEYMAALLTSTRGDKDKSAIYLGECRRLG 829

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
            IQ++PP VN     F      I + L+AI+ VG      I+E      +    DF  +V 
Sbjct: 830  IQVLPPDVNDSIGTFASVGEDIRFGLSAIRNVGDNVVAGIVEGRQAGAYTDFPDFLDKVP 889

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKG 932
                N+R+L+SL+ +GA D  G+ R  L    D        +++N     +++F   +  
Sbjct: 890  LHVCNKRMLDSLIKSGAFDSLGHRRRALTTIADEAVDAYVDLKRNAAIGQDSLFDGLDDA 949

Query: 933  TFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---A 988
            +    I++         +     E+ +LG Y S HPL   + +LR        E +    
Sbjct: 950  SSGITISVPDQMPEWEKTQLLAFERDMLGLYVSDHPLRGLEHVLRASSDCSLGELMVDTE 1009

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               G+ + +  ++    ++ ++KG     +T  +     E   FP
Sbjct: 1010 RADGSTVTICGLITGVSRRMSKKGDTWASITVEDLEGGVEVMVFP 1054


>gi|302533930|ref|ZP_07286272.1| DNA polymerase III subunit alpha [Streptomyces sp. C]
 gi|302442825|gb|EFL14641.1| DNA polymerase III subunit alpha [Streptomyces sp. C]
          Length = 1180

 Score = 1001 bits (2589), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1072 (32%), Positives = 544/1072 (50%), Gaps = 56/1072 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+P F HL VH+ YSLL+GA  L ++           IA++D  NL  A +F   A  
Sbjct: 1    MTKTP-FTHLHVHTQYSLLDGAARLKDMFAACNEMGMTHIAMSDHGNLHGAYDFFHSAQK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AGI PIIG +  +  +                    +         +  + A G   L  
Sbjct: 60   AGITPIIGIEAYVAPESRRNKRRIQWGQPHQKRDDVSGSGGYTHKTIWAANATGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y      +  R+    + +  +EGLI  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLTKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAIKAASDY 178

Query: 175  KKLFGD-RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            K +FG+ R ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  KDIFGEGRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEAGAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVH- 288
             +     +S  DR R     +YLK+  EM +I S     E   NT ++A +         
Sbjct: 239  CIQTGKNLSDPDRFRFDGSGYYLKSTEEMYAIDSSDAWQEGCANTWKVAEQVDTEGMFKF 298

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P+F   +       E    R + + G+  R   G        +D  +++++E++ I
Sbjct: 299  RNLMPKFDIPDG----YTEVTWFREETMRGMHRRFPGGI------PEDRMKQVEYEMDTI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
              M F GYFL+VADFI WAK   I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFL
Sbjct: 349  ISMGFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G+++AK A++D  R L  P
Sbjct: 409  NPERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y+  DRL K +P D     + L  I D S          R     +P V ++++ ++ +E
Sbjct: 469  YAMGDRLTKAMPADVLGKGIPLSGILDPSHPRYSEAGEIRGMYENEPDVKKVIDTARGVE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++    ++  VP++      + +TQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSERITDHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   +G+ +DL  +P DD +T+ LL    TLG+FQ +   MR  L  M+PD
Sbjct: 589  TIMDDAVKMVKANKGIDIDLLALPLDDPKTFELLQRGDTLGVFQFDGGPMRSLLRLMKPD 648

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQ 692
              EDI A+ +LYRPGP+       Y  RKN ++ I  IHP     ++ +L  T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMNSHTNYALRKNKQQDITPIHPELEKPLEEVLAVTYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F +GA KNG S      ++++
Sbjct: 709  EQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFTIFQAGARKNGYSDQAIQALWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H+AAY ++SY TA++K +YP E++A  +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAGLLTSVKDDKDKSAIYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCS 870
             I+++PP+VN    +F   GD+ I + L A++ VG      I++       + S  DF  
Sbjct: 829  GIKVLPPNVNESESNFAAQGDDVILFGLTAVRNVGQNVVDSIIKTRKSKGKYSSFPDFLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--- 927
            +V++   N+R +ESL+ AGA D  G++R  L+   +++      V++       ++F   
Sbjct: 889  KVEAVVCNKRTVESLIKAGAYDEMGHTRKGLVAHHESMIDNVVAVKRKEAEGQFDLFGGM 948

Query: 928  ----AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                  ++  F   +          S     E+ +LG Y S HPL   + +L      G 
Sbjct: 949  GDEDGGDEPGFGLDVEFSDV-EWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKTDAGI 1007

Query: 984  EESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +        G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1008 SQLTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1059


>gi|118463133|ref|YP_882406.1| DNA polymerase III subunit alpha [Mycobacterium avium 104]
 gi|118164420|gb|ABK65317.1| DNA polymerase III alpha subunit [Mycobacterium avium 104]
          Length = 1177

 Score = 1001 bits (2589), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/1067 (31%), Positives = 545/1067 (51%), Gaps = 50/1067 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S SFVHL  H+ YS+L+GA  +  +L ++     PA+ +TD  N+F A EF   A  
Sbjct: 1    MNHS-SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNAATK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AGI+PIIG +  I                       +   +   + ++   A G + L +
Sbjct: 60   AGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMVAENAAGLRNLFK 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   +G+I  TG  SG +         + A +    +
Sbjct: 120  LSSLASFEGQLGKWSRMDAELIAE-HADGIIATTGCPSGEVQTRLRLGQDREALESAAKW 178

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +++F  D  ++ L  H    ++     ++++     +P +ATN+  +++ +    H+ L+
Sbjct: 179  REIFGADNFFLELMDHGLSIEQRVRGGLLEIGRKLNIPPLATNDCHYVTRDAAHNHEALL 238

Query: 233  AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAP 290
             V     +S  +R +   D +YLK+ +EM  I+ +++P A ++T+ IA R     +V  P
Sbjct: 239  CVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDAEVPGACDSTLLIAERVQSYAEVWTP 298

Query: 291  I--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +P F   E  D    + + L ++ +AGL  R   G        QDY  R ++E+ VI
Sbjct: 299  RDRMPVFPVPEGHD----QASWLHHEVMAGLRRRFPDGV------GQDYIDRAEYEIKVI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
                F  YFLIVAD I +A+  +I VGPGRGS AGS+ AYAL IT+IDP+   LLFERFL
Sbjct: 349  CDKGFPSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--Q 466
            NP+R S PD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAAL+D  R    Q
Sbjct: 409  NPERPSAPDIDIDFDDRRRGEMVRYAADKWGSDRVAQVITFGTIKTKAALKDSARIHYGQ 468

Query: 467  MPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQK 517
              ++  DR+ K +P    A  + L  I D S          R     DP V  + + ++ 
Sbjct: 469  PGFAIADRITKALPPPIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARG 528

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+
Sbjct: 529  LEGLIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLR 588

Query: 578  TLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT++  +LD +   RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQ
Sbjct: 589  NLTIIGDALDNIKANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQ 648

Query: 637  PDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVII 690
            P    DI+A+++LYRPGP+       Y +RKNG++ I  IHP ++     +L ET G+I+
Sbjct: 649  PTEFNDIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLREILAETYGLIV 708

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQ+M IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     ++
Sbjct: 709  YQEQIMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALW 768

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            + +  FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R
Sbjct: 769  DTILPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCR 828

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFC 869
            +  I ++PP VN   V+F      I + L A++ VG      +++   +   F    D+ 
Sbjct: 829  KLGITVLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIKTREEKGKFTDFSDYL 888

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            +++D    N++V ESL+ AGA D   ++R  L     +        +K       ++F  
Sbjct: 889  NKIDISACNKKVTESLIKAGAFDSLKHARKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGG 948

Query: 930  EKGTFSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987
            + G      T++          +   E+ +LG Y SGHPL+    +L           + 
Sbjct: 949  DGGCTESVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTQIPAILD 1008

Query: 988  -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    +R+  ++ S  ++  + G         +     E  FFP
Sbjct: 1009 GDVPNETQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1055


>gi|50955139|ref|YP_062427.1| DNA polymerase III subunit alpha [Leifsonia xyli subsp. xyli str.
            CTCB07]
 gi|50951621|gb|AAT89322.1| DNA polymerase III, alpha subunit [Leifsonia xyli subsp. xyli str.
            CTCB07]
          Length = 1171

 Score = 1001 bits (2588), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1062 (35%), Positives = 576/1062 (54%), Gaps = 51/1062 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL VHS YS+L+GA  +  ++D       PA+A+TD  N+F A +F + A  AGI
Sbjct: 2    ADSFVHLHVHSEYSMLDGAARVKPLIDAAVEQGMPAVAVTDHGNMFGAFDFWRTAIDAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGK---------TPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            +PIIG +  +    +     + +         +       + LL +T EG   L  + S 
Sbjct: 62   KPIIGTEAYLTPGTHRTDKTRIRWGDGGGDDVSGSGAYTHMTLLAATTEGMHNLFRMSSL 121

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              +        R+    L +   +G+I  TG  SG +         + A+K    F+ +F
Sbjct: 122  ASIEG-YYFKPRMDRELLSQYA-KGIIATTGCPSGEVQTRLRLGQYEEAKKAAAEFRDIF 179

Query: 179  -GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
              +  Y  +  H  G +R   S +++LA    LPLVATN+  +    D ++H  L+ V  
Sbjct: 180  GKENFYAEIMDHGLGIERRIMSDLIRLAKELGLPLVATNDLHYTHAADAKSHAALLCVQS 239

Query: 237  STVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
             + +   +R +   D  YLK   +M  +F D P+A +NT+ IA R        A  +PRF
Sbjct: 240  GSTLDDPNRFKFDADEFYLKTSEQMRQLFRDHPDACDNTLTIAERVDVRFDTAANYMPRF 299

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                 +     E+     +   GL  R + G         + R++ D+E+ VI++M F G
Sbjct: 300  PVPAGE----TEQTWFVKEVERGLAERYSNGV------TPEVRKQADYEIGVISQMGFPG 349

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+VADFI W+K N I VGPGRGSGAGS+ AYA+ ITD+DPLR  L+FERFLNPDR+SM
Sbjct: 350  YFLVVADFINWSKDNGIRVGPGRGSGAGSMAAYAMRITDLDPLRHGLIFERFLNPDRVSM 409

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFD+DF   RR EVI+YV +KYG ERVAQI+T+G+++AK AL+D  R L  P+   ++L
Sbjct: 410  PDFDVDFDDRRRGEVIKYVTDKYGEERVAQIVTYGTIKAKQALKDSSRVLGFPFGMGEKL 469

Query: 476  CKLIPND-PAHPVSLQAIAD--DSRFREA------RLADPSVDRLLEISQKLEGLYRHAS 526
             K +P       + L  I D    R++EA        +DP    + + +  LE L R   
Sbjct: 470  TKAMPPPVMGKDIPLTGIFDKQHPRYKEALDIRAVVESDPEAKTVFDTALGLENLKRQWG 529

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HAAG+++   PL  ++P+ +  +    VTQF+    E  GLIK DFLGL+ LT++  +L
Sbjct: 530  VHAAGVIMSSDPLIDVIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIINDAL 589

Query: 587  DFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            D + A RG K+ L  +  DD   Y LL+   TLG+FQL+   MR  L  M+PD  EDI A
Sbjct: 590  DNIEANRGEKLVLENLELDDRAAYELLSRGDTLGVFQLDGGPMRSLLRLMKPDNFEDISA 649

Query: 646  LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQEQVMQIA 699
            L++LYRPGP+  ++   Y  RKNG+++I  IHP +      +L  + G+IIYQEQVM IA
Sbjct: 650  LIALYRPGPMGANSHTNYALRKNGQQEITPIHPELAQPLQDILSTSYGLIIYQEQVMAIA 709

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q ++G+SL +AD+LRRAMGKK K E+DKQ E F  G  +NG S      ++E+L  F+DY
Sbjct: 710  QKVAGFSLGQADILRRAMGKKKKSELDKQFEGFSQGMVENGYSVAAVNKLWEILLPFSDY 769

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNK+H+AAY VISY TA++K HYP E++AA +T   D+ +K+  +  + R+  I+++PP
Sbjct: 770  AFNKAHSAAYGVISYWTAYLKAHYPAEYMAALLTSVGDSKDKMALYLNECRRMGIEVLPP 829

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
             VN   + F      I + + A++ VG      + EA      F+S  DF SRV     N
Sbjct: 830  DVNESSLYFAAVGEDIRFGMGAVRNVGANVVEGVREARESSGRFESFHDFLSRVPVHAAN 889

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK-----HENIFAHEKGT 933
            +R +ESL+ AGA D  GY+R  L++  ++  + A  ++++  N       ++++  ++  
Sbjct: 890  KRTVESLIKAGAFDSLGYTRRALVEVHEDAVESAVKIKRSEANGDVGFDFDSLWGDDEPN 949

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--- 990
             S +  + +        +   E+ +LG Y S HPL   +  L K+      + VA+    
Sbjct: 950  RS-QHHIPERPEWVKRDKLAFEREMLGLYVSDHPLAGLELHLAKLASTSIADLVASETVQ 1008

Query: 991  RGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANF 1031
             G  + +A +V S Q +  +  G++ G +   +   E  A F
Sbjct: 1009 DGETVVIAGLVTSVQHRVAKASGNQYGMIQVEDFGGEMTAMF 1050


>gi|332108545|gb|EGJ09769.1| DNA polymerase III, alpha subunit [Rubrivivax benzoatilyticus JA2]
          Length = 1169

 Score = 1001 bits (2588), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1048 (39%), Positives = 589/1048 (56%), Gaps = 43/1048 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+ H+ YS+++G L +++      AD QPA+AITD +NLF A++F +    AG++P
Sbjct: 2    PFVHLRTHTEYSVVDGTLRIDDAAGAAKADGQPALAITDLSNLFGAIKFYKACRGAGVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G  + +D   +                + LLV    GY  L EL++R +  +  +   
Sbjct: 62   IVGVDVWMDPLPDAAER--------QPTRLALLVQDRGGYLNLCELLARAWTKNVQRNQA 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +   WL E+ + GLI L+G   G + +A      Q A         +F  R Y+ LQR 
Sbjct: 114  WVKWEWLHEL-SGGLIALSGADMGAVGQALLAGDEQRAAAAARELASIFPGRFYLELQRA 172

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
                        V LA    LP+VAT+   FL  +D+EAH+  + +A    ++   R  R
Sbjct: 173  GLPTHEAHVRAAVPLAARLGLPVVATHPIQFLEPDDFEAHEARVCIAEGETLANPKRIKR 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + + K  ++M S+F+D+P A+ NTVEIARRCS  L +  P LP F   +   I    
Sbjct: 233  FTREQHFKTAAQMESLFADVPSAIANTVEIARRCSLTLVLGKPRLPDFPTPDGSPI---- 288

Query: 308  ENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +   R  +  GLE RL         +     +Y +RL+FEL+ I +M F GYFLIV+DFI
Sbjct: 289  DVYFRKASHEGLEKRLVALFPKEEEREKRRPEYVERLEFELDTILKMGFPGYFLIVSDFI 348

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAK N  PVGPGRGSGAGS+ AYAL ITD+DPL++ LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 349  VWAKANGCPVGPGRGSGAGSLVAYALFITDLDPLQYKLLFERFLNPERVSMPDFDIDFCQ 408

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
              RD VIRYV+ KYG + V QI TFG++ AKAALRDVGR L M Y  VD + KLIP  P 
Sbjct: 409  GNRDRVIRYVKEKYGRDAVGQIATFGTMAAKAALRDVGRVLGMGYGHVDSIAKLIPAPPG 468

Query: 485  HPVSLQAIAD--DSRFREARLADPSVDR----------LLEISQKLEGLYRHASTHAAGI 532
              V+L  + +  D     AR  +P +DR          LL ++ ++EG+ R+   HA G+
Sbjct: 469  KTVTLAKVPEKPDPGIIYARQEEPEIDRREAAEEEVAELLSLATRVEGMVRNIGMHAGGV 528

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            +I    ++   P+Y+   SD  V+Q++   +E  GL+KFDFLGL TLT+L+ +  F+  R
Sbjct: 529  LIAPGKITDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILELARQFIVAR 588

Query: 593  GVKV---DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
               +       +P DD   Y L +   T  +FQ ES GM+  L   +P  +ED+IAL +L
Sbjct: 589  RPNMKDFSYETLPLDDQRVYKLFSDGLTEAVFQFESRGMQGMLREAKPSRLEDLIALNAL 648

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP+D I  +  RK+GKE +   HPL++ +L ET GV++YQEQVMQ AQ+L GYSL  
Sbjct: 649  YRPGPMDLIPTFVARKHGKETVEYPHPLLETVLGETYGVMVYQEQVMQTAQVLGGYSLGG 708

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM + +  F  GA+K  I +  A  +F+L+ KFA YGFNKSHAAAY
Sbjct: 709  ADLLRRAMGKKKPEEMAQHRVIFREGAAKKDIPEAKADEVFDLMEKFAGYGFNKSHAAAY 768

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            ++++Y TAW+K H   EF AA+MT+E DN +K+K    DA+ F I+  PP VNT  + F+
Sbjct: 769  SLLAYHTAWIKVHCTAEFFAANMTIEADNTDKLKVLLADAKLFGIRFDPPDVNTGTLRFE 828

Query: 830  -VGDNRIYYSLAAIKGVGTTTARHIMEASA------DKPFDSLEDFCSRVDSKKLNRRVL 882
             + D RI Y L A+KG G      I+ A          PF SL DFC+RVD +++N+RV+
Sbjct: 829  PIEDKRIRYGLGAVKGTGAGAIEAIVAAREGRAGDGGGPFRSLFDFCARVDRQRVNKRVV 888

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E+L+ AGA D     R   L S+    ++A     N+       F    G+ + +  L  
Sbjct: 889  EALIKAGAFDSLHADRAATLASVGLAFEWADTQAANKDQGGLFDFGDAHGSSTQEPALVA 948

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                +   R   E+  +GFY SGH  D  +  +RK   +   E V +    ++  A +V 
Sbjct: 949  VEPWSVRERLMQEKIAIGFYLSGHLFDACRDEVRKFVRRDIVELVDSREPQSV--AGIVS 1006

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
              +    ++G R+      + ++  EA 
Sbjct: 1007 ELRVINGQRG-RVAIFKLDDGSEAIEAV 1033


>gi|299533528|ref|ZP_07046905.1| DNA polymerase III, alpha subunit [Comamonas testosteroni S44]
 gi|298718486|gb|EFI59466.1| DNA polymerase III, alpha subunit [Comamonas testosteroni S44]
          Length = 1177

 Score = 1001 bits (2587), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1058 (37%), Positives = 594/1058 (56%), Gaps = 58/1058 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   +N ++   A D Q A+AITD NNLF  ++F ++    G++P+
Sbjct: 2    FVHLRLHTEFSVVDGTTRVNAMIKAAAEDGQVAMAITDFNNLFGGIKFYREGRGKGVKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++                    I++LV + +GY  + EL++R +  +  +   +
Sbjct: 62   LGAEIMLE-----------GLGDAPPSRIIVLVQSKQGYHNIAELLARGWTRNVVRDQAQ 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
                WLQE+G EGLI+L+G  +GP+  A      + A +       +F  R Y+ LQR  
Sbjct: 111  HKWEWLQELG-EGLIVLSGAQAGPVGIALTRGDEKGAAEIAQRLATMFPHRFYIELQRAG 169

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D       V+LA    LP+VAT+   +   +DYEAH+  + +A   ++    R  + 
Sbjct: 170  RADDESHVLAAVKLASRLNLPVVATHPIQYAKPDDYEAHEARVCIAEGEILGNAKRVRKF 229

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T D Y K  +EM  +F+D+P A+ENTVEIARRCS  L++  P LP F       +    +
Sbjct: 230  TRDQYFKTTAEMEQLFADIPSAIENTVEIARRCSLTLELGNPQLPNFPVPSGMSM----D 285

Query: 309  NELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R+++  GLE RL      A  +      Y +RL+FEL  I +M F GYFLIV+DFI+
Sbjct: 286  EFFRHESYQGLEERLVHLYPDAAKRDAQRSRYVERLEFELGTIMKMGFPGYFLIVSDFIK 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AY L +TD+DPL ++LLFERFLNP+R+SMPDFD+DFCQ 
Sbjct: 346  WAKANGCPVGPGRGSGAGSLVAYVLKVTDLDPLEYNLLFERFLNPERVSMPDFDVDFCQQ 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV+++YG + V+QI TFG++ A+AA+RDVGR L M Y+  D + KLIPN P  
Sbjct: 406  NRDRVIDYVKDRYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGL 465

Query: 486  PVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             V+L+              AI ++    E    +  V  L+E++Q LEG+ R+   HA G
Sbjct: 466  HVTLKYPPNPPKEGDKYTYAIKEEPILAERIEREEDVKTLIEMAQSLEGMTRNIGMHAGG 525

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI    L+   P+Y+   S   V  ++   +E  GL+KFDFLGL TLT+L+ + +F+ +
Sbjct: 526  VVIAPGRLADFCPLYQQPGSTSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIMK 585

Query: 592  RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R           IP DD+ TY L +   T  +FQ ES GM+Q L+  +P  +ED+IAL +
Sbjct: 586  RHKGQENFQFENIPLDDYPTYKLFSDGKTEAVFQFESRGMQQMLKEAKPSRLEDLIALNA 645

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK+G+E +   HPL++ +L ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 646  LYRPGPMDLIPTFIARKHGQEVVEYPHPLVESVLAETYGIMVYQEQVMQTAQVLGGYSLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM K +  F  GA+KNG+S+  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 706  GADLLRRAMGKKKVEEMVKHRGIFREGAAKNGLSEEKADEVFDLMEKFAGYGFNKSHAAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y++++Y T W+K HY  EF   +MT+EMDN +K+K   +DA +  I    P VN     F
Sbjct: 766  YSLLAYHTGWLKVHYTAEFYCGNMTVEMDNTDKLKVLYEDALKMGITFEMPDVNRGVYRF 825

Query: 829  KVGDNR-IYYSLAAIKGVGTTTARHIMEAS----------ADKPFDSLEDFCSRVDSKKL 877
            +   ++ I Y L AIKG G      I+ A              PF SL DFC RVD  ++
Sbjct: 826  EPVTDKVIRYGLGAIKGTGQAAIEAIVAARNGEGTGPNGHEKGPFKSLFDFCLRVDRSRI 885

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGT 933
            N+R +E+L+  GA D    +R  L+ +LD    +A     N       +F        G+
Sbjct: 886  NKRTVEALIKGGAFDTIDMNRASLMATLDTAFGFAATSIANAD--QGGLFDMMGDDALGS 943

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
             + +  +          +   E+  +GFY +GH  D  +  +R+       E   +    
Sbjct: 944  STAEPPMADVLPWGVKEKLTLEKTAIGFYLTGHLFDEVEAEVRRFVRTPIGEMRDSREPQ 1003

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
               +A ++   +    ++G R+   T  + +   EA+ 
Sbjct: 1004 --TMAGIIGGLRTINGQRG-RLSIFTLDDKSAVIEASV 1038


>gi|257468959|ref|ZP_05633053.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185]
 gi|317063207|ref|ZP_07927692.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185]
 gi|313688883|gb|EFS25718.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185]
          Length = 1141

 Score = 1001 bits (2587), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1037 (38%), Positives = 609/1037 (58%), Gaps = 35/1037 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSLL+G   +++ LD+       AIAITD  NLF  LE  +KA   GI+P
Sbjct: 4    NFVHLHLHTEYSLLDGVGKIDDYLDRAKVLGMQAIAITDHGNLFGVLELYKKAMKKGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG +  +     L+   +       +  +VLL    +GYQ L+++ S  Y+        
Sbjct: 64   VIGLEAYVSEFSMLEKDGR-------IFHLVLLAENNKGYQNLLKISSESYIKG-FYYKP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRLYVNLQ 187
            RI   +L+   +EG+I L+    G I R    N S+   ++ +  +  +F  D  Y+ +Q
Sbjct: 116  RIDKEFLKN-HSEGIIALSACMQGEIPRRILDNESEEKVDEIVNEYVDIFGKDNFYIEVQ 174

Query: 188  RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +    +     ++  LA  H+L ++ATN++ +++E ++   D+L+ V     VS + R 
Sbjct: 175  ANGVKGQTALNEKLYDLAQKHQLKMIATNDTHYVNEGEHTLQDILICVQTGAKVSDEKRM 234

Query: 247  RVTPDH-YLKNRSEMVS-IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R+  D  +LK+R +++  + +   EA+ NTVEIA RC+  ++      P +    C    
Sbjct: 235  RIETDELFLKSREQIIDGLGAKYLEAVNNTVEIAERCNVDIEFGKFKFPDYKIPSC---A 291

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K  E  LR     GL  R  QG            +R+++EL+VI +M ++ YF++V DFI
Sbjct: 292  KSIEEFLRKLVYFGLSKRYPQGL------TVTVLERVEYELSVIEKMGYAAYFVVVWDFI 345

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AK+N IP+GPGRGS AGS+ AYAL IT++DPL ++L+FERFLNP+R+SMPD DID CQ
Sbjct: 346  DYAKRNRIPIGPGRGSAAGSLVAYALRITELDPLSYNLIFERFLNPERISMPDIDIDICQ 405

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YV  KYG ++VAQIITFG+++A+AA+RDVGR +    S++D + KL+P +  
Sbjct: 406  ERRQEVIEYVIRKYGEDKVAQIITFGTMKARAAIRDVGRVMDTSLSKIDSVAKLVPFNAT 465

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               +L  + +   F+   L DP + ++++IS +LE   RHAS HAAGIVI   PL+  VP
Sbjct: 466  IQQTLNNVEE---FKNMYLNDPEIQKVIDISARLENKVRHASVHAAGIVITKDPLTDTVP 522

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603
            +Y D ++ +  TQ+ MK +E  GL+K DFLGL+ LT LQ+++D++ +  G  ++LS IP 
Sbjct: 523  LYSDNKNKIVSTQYQMKELEDLGLLKMDFLGLRNLTNLQRAIDYIKEDLGEDIELSEIPL 582

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            +  + Y +L+   T G+FQLES G+R+ L  ++PD  EDIIAL++LYRPGP+ + +V  +
Sbjct: 583  NSKKVYEMLSRGDTSGVFQLESQGIRKILLKLKPDRFEDIIALLALYRPGPLGSGMVDDF 642

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             N KNG  +I+  HP ++  LKET GVI+YQEQVM+IA +++ YSL EAD+LRRAMGKK 
Sbjct: 643  INGKNGISEIIYPHPSLELTLKETYGVILYQEQVMKIANIMANYSLGEADLLRRAMGKKN 702

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             + M++ +E+F+  + +NG +K  A+ +FEL+ KFA YGFNKSH+AAYA+I+Y TA+ K 
Sbjct: 703  VQIMEENREKFVERSMENGYTKEKAIEMFELIDKFAGYGFNKSHSAAYALIAYWTAYFKA 762

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +Y   + A+ MT EM +VE I  + +DA+  N+++  P VN     F+V    I +SLAA
Sbjct: 763  YYMKHYYASLMTSEMSHVEDIAFYMEDAKAHNMKLHLPDVNRASSKFRVDKEGIIFSLAA 822

Query: 842  IKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK VG   +  I+E  + +  + + EDF  R     LN++ LESL+ AGALD    +R Q
Sbjct: 823  IKNVGEGVSAKILEECNENGDYKNFEDFVVRTRKHGLNKKALESLILAGALDSLPGNRKQ 882

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
              +S+D I  YA    K    +  N+F   K +     TL +    +       E+  LG
Sbjct: 883  KFESVDKILDYATRKIKEDEIQQMNLFGEAKSSLGV-FTLPQVPEYSLEELLAREKEYLG 941

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI---RLAAMVVSKQQKKTRK-GSRIG 1016
            FYFS HPLD Y+ ++    +    E        ++   R   ++   ++  T+K G  + 
Sbjct: 942  FYFSAHPLDNYRRLIEVYRLSKISELKELKEEKSVQIFRTCGILREIKKIVTKKTGQIMC 1001

Query: 1017 WVTFSEPAKEYEANFFP 1033
                 +  ++     FP
Sbjct: 1002 LFELEDYYEKINCVVFP 1018


>gi|289670237|ref|ZP_06491312.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv.
            musacearum NCPPB4381]
          Length = 1195

 Score = 1000 bits (2586), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1082 (38%), Positives = 605/1082 (55%), Gaps = 79/1082 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHAN-LFAL-AGRDSLAGRLFGEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGRDGEERFNQFALNAAGVRGLPVVASNDVRFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   Y+K+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E + +    ++ +R+++  GL  RL +  +A G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPEDETL----DSWIRSQSRDGLAARLEKSPLAPGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K  +IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFPGYFLIVADFIQWGKNQSIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLY 522
              VD + KLIPN     +   A+ +            +    +  V  L++++++LE L 
Sbjct: 464  GLVDSVAKLIPNILGITLK-DAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523  RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+T
Sbjct: 523  RNAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582

Query: 579  LTLLQKSLDFLAQRGV-----KVDLSLIPFDDHETYHL-LTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  +  R        VD++ IP DD  TY     +  T  +FQ ESSGMR+ L
Sbjct: 583  LTIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFASGSTGAVFQFESSGMRRLL 642

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQ
Sbjct: 643  KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEAILKDTYGIMVYQ 702

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703  EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             + + PP VN     F+        Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 823  GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGLGACEAIVEERQRGGPYTTLLDFCT 882

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883  RVGTAKLNRRTLEAMINAGAMDGLGKNRASLILQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 931  KGTFSDK-ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------ 983
              +     + L +            E+  LGFY SGHP D ++  +R++           
Sbjct: 943  DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKI 1002

Query: 984  -------------EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                          E  A     +  LA  V+  ++    KG    +V   +     E +
Sbjct: 1003 LASQQRGGGGGGDGEKRAWRPEVSAILAGQVIGVRR----KGDSQVFVQLEDGRGRVECS 1058

Query: 1031 FF 1032
             F
Sbjct: 1059 AF 1060


>gi|229817355|ref|ZP_04447637.1| hypothetical protein BIFANG_02617 [Bifidobacterium angulatum DSM
            20098]
 gi|229785144|gb|EEP21258.1| hypothetical protein BIFANG_02617 [Bifidobacterium angulatum DSM
            20098]
          Length = 1184

 Score = 1000 bits (2586), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1072 (32%), Positives = 549/1072 (51%), Gaps = 56/1072 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S +FVHL  H+ YSLL+GA  +  +    A    PA+ ITD  N+  A E       
Sbjct: 1    MSDSGNFVHLHNHTHYSLLDGASKIPELAKYAADLSMPAVGITDHGNMHGAYEMYTNCVK 60

Query: 65   AGIQPIIGCQLDIDMQ------DNLKMTNQGKTPFPT-----VPSIVLLVSTAEGYQRLI 113
             G++PIIG +  +  +        +    + +          +  + L     EG   LI
Sbjct: 61   VGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTLWAENDEGLVNLI 120

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +  S   L  + ++  R+    L    ++G+I  +G  SG I           A +    
Sbjct: 121  KASSVANLEGRVQRYPRMDKEVLSTY-SKGVICGSGCPSGIIQTRLALGQFDEALRAAGE 179

Query: 174  FKKLF-GDRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             + +F  D  ++ +  H      R    ++++A   + PL+ATN+S ++  ED EA D +
Sbjct: 180  LQDIFGKDNFFIEIMDHGLTIENRNIPGLLEIAKKLDAPLLATNDSHYVHAEDAEAQDAM 239

Query: 232  MAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +   + +   +R +     +YLK   EM  IF + P A +NT+EIA RC+ +   H  
Sbjct: 240  LCINSGSHLDDPNRFKFDGTGYYLKPAEEMREIFKEFPGACDNTLEIAERCNVMFDDHED 299

Query: 291  --ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +P+F   E  D    E +    K   GLE R            ++  ++ D+E  VI
Sbjct: 300  GAFMPQFDCPEGWD----EASLFLKKVEEGLERRYDNNV------PEEVSKQADYECGVI 349

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M+F GYFL+VAD+IQWAK + I VGPGRGS AGS+ AYA+ IT++DPL+  L+FERFL
Sbjct: 350  CQMQFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGSMVAYAMGITELDPLKHGLIFERFL 409

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+S+PD D+DF  + R  VI Y   KYG ++VAQ + +G ++ K AL+D  R +   
Sbjct: 410  NPERVSLPDIDVDFDPEGRLHVIDYCGEKYGRDKVAQCVIYGVIKTKQALKDSARIMGYD 469

Query: 469  YSQVDRLCKLIP-NDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            ++  D++ K +P +      SL+ I D +         FRE   +DP   ++++ ++ +E
Sbjct: 470  FAMGDKVTKALPPSKNGKDASLKEIFDPTSKHYAEAREFRELYESDPDAHKIIDKAKTIE 529

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HA   ++G  P++   P+ + V  +   T F     E  GL+K DFLGL  L
Sbjct: 530  GLIRQTGVHACATIMGSEPITDTSPLLQRV-DNTVTTTFEYHTCETLGLVKMDFLGLSNL 588

Query: 580  TLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++Q +L  + A     VD + IP DD ETY LL    TLG+FQL+S GMR  L+ ++PD
Sbjct: 589  TVIQDTLKNIVANGKDPVDYTKIPLDDKETYQLLARGDTLGVFQLDSDGMRALLKSLKPD 648

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQ 692
               DI AL++LYRPGP+D      Y  RKNG +KI  IHP ++     +L ET G+I+YQ
Sbjct: 649  NFNDISALIALYRPGPMDMDSHNNYAKRKNGLQKIEPIHPELEEPLKQVLDETYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F  G  ++G S+  A  ++++
Sbjct: 709  EQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFQGMKEHGYSEEAAQAVWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +    DN +K   +  +AR+ 
Sbjct: 769  LVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGTKDNKDKTALYLGEARRM 828

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCS 870
             IQ++ P VN     +    + + + L AI+ VG      I+         F +  DF  
Sbjct: 829  GIQVLSPDVNESVYAYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGKRGKFVNFMDFVR 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RV    LNRR++ESL+ AGA D    +R  L Q  +   +    +++       ++F+  
Sbjct: 889  RVPLSALNRRLVESLIKAGAFDSIDPNRRALYQIHETAIESVVGLKRKEAEGQFDLFSDM 948

Query: 931  KGTFSDK------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                         +T+      +   +   E+ +LG Y S HPL     +L  +      
Sbjct: 949  DDADEQDVMGDASVTVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMTAVLAGLREMSIA 1008

Query: 985  ESVATIR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +   +    G  + +A +V +  ++ +++G+    VT  +     +  FF
Sbjct: 1009 HLIDRAKTMGEGQQVTIAGLVTNVDRRVSKRGNAWAIVTVEDLESSIQCMFF 1060


>gi|264678275|ref|YP_003278182.1| DNA polymerase III subunit alpha [Comamonas testosteroni CNB-2]
 gi|262208788|gb|ACY32886.1| DNA polymerase III, alpha subunit [Comamonas testosteroni CNB-2]
          Length = 1177

 Score = 1000 bits (2585), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1058 (37%), Positives = 594/1058 (56%), Gaps = 58/1058 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   +N ++   A D Q A+AITD NNLF  ++F ++    G++P+
Sbjct: 2    FVHLRLHTEFSVVDGTTRVNAMIKAAAEDGQVAMAITDFNNLFGGIKFYREGRGKGVKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++                    I++LV + +GY  + EL++R +  +  +   +
Sbjct: 62   LGAEIMLE-----------GLGDAPPSRIIVLVQSKQGYHNIAELLARGWTRNVVRDQAQ 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
                WLQE+G EGLI+L+G  +GP+  A      + A +       +F  R Y+ LQR  
Sbjct: 111  HKWEWLQELG-EGLIVLSGAQAGPVGIALTRGDEKGAAEIAQRLATMFPHRFYIELQRAG 169

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D       V+LA    LP+VAT+   +   +DYEAH+  + +A   ++    R  + 
Sbjct: 170  RADDESHVLAAVKLASRLNLPVVATHPIQYAKPDDYEAHEARVCIAEGEILGNAKRVRKF 229

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T D Y K  +EM  +F+D+P A+ENTVEIARRCS  L++  P LP F       +    +
Sbjct: 230  TRDQYFKTAAEMEQLFADIPSAIENTVEIARRCSLTLELGNPQLPNFPVPSGMSM----D 285

Query: 309  NELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R+++  GLE RL      A  +      Y +RL+FEL  I +M F GYFLIV+DFI+
Sbjct: 286  EFFRHESYQGLEERLVHLYPDAAKRDAQRSRYVERLEFELGTIMKMGFPGYFLIVSDFIK 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AY L +TD+DPL ++LLFERFLNP+R+SMPDFD+DFCQ 
Sbjct: 346  WAKANGCPVGPGRGSGAGSLVAYVLKVTDLDPLEYNLLFERFLNPERVSMPDFDVDFCQQ 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV+++YG + V+QI TFG++ A+AA+RDVGR L M Y+  D + KLIPN P  
Sbjct: 406  NRDRVIDYVKDRYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGL 465

Query: 486  PVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             V+L+              AI ++    E    +  V  L+E++Q LEG+ R+   HA G
Sbjct: 466  HVTLKYPPNPPKEGDKYTYAIKEEPILAERIEREEDVKTLIEMAQSLEGMTRNIGMHAGG 525

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI    L+   P+Y+   S   V  ++   +E  GL+KFDFLGL TLT+L+ + +F+ +
Sbjct: 526  VVIAPGRLADFCPLYQQPGSTSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIMK 585

Query: 592  RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R           IP DD+ TY L +   T  +FQ ES GM+Q L+  +P  +ED+IAL +
Sbjct: 586  RHKGQENFQFENIPLDDYPTYKLFSDGKTEAVFQFESRGMQQMLKEAKPSRLEDLIALNA 645

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK+G+E +   HPL++ +L ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 646  LYRPGPMDLIPTFIARKHGQEVVEYPHPLVESVLAETYGIMVYQEQVMQTAQVLGGYSLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM K +  F  GA+KNG+S+  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 706  GADLLRRAMGKKKVEEMVKHRGIFREGAAKNGLSEEKADEVFDLMEKFAGYGFNKSHAAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y++++Y T W+K HY  EF   +MT+EMDN +K+K   +DA +  I    P VN     F
Sbjct: 766  YSLLAYHTGWLKVHYTAEFYCGNMTVEMDNTDKLKVLYEDALKMGITFEMPDVNRGVYRF 825

Query: 829  KVGDNR-IYYSLAAIKGVGTTTARHIMEAS----------ADKPFDSLEDFCSRVDSKKL 877
            +   ++ I Y L AIKG G      I+ A              PF SL DFC RVD  ++
Sbjct: 826  EPVTDKVIRYGLGAIKGTGQAAIEAIVAARNGEGTGPNGHEKGPFKSLFDFCLRVDRSRI 885

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGT 933
            N+R +E+L+  GA D    +R  L+ +LD    +A     N       +F        G+
Sbjct: 886  NKRTVEALIKGGAFDTIDMNRASLMATLDTAFGFAATSIANAD--QGGLFDMMGDDALGS 943

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
             + +  +          +   E+  +GFY +GH  D  +  +R+       E   +    
Sbjct: 944  STAEPPMADVLPWGVKEKLTLEKTAIGFYLTGHLFDEVEAEVRRFVRTPIGEMRDSREPQ 1003

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
               +A ++   +    ++G R+   T  + +   EA+ 
Sbjct: 1004 --TMAGIIGGLRTINGQRG-RLSIFTLDDKSAVIEASV 1038


>gi|325108084|ref|YP_004269152.1| DNA polymerase III subunit alpha [Planctomyces brasiliensis DSM 5305]
 gi|324968352|gb|ADY59130.1| DNA polymerase III, alpha subunit [Planctomyces brasiliensis DSM
            5305]
          Length = 1172

 Score = 1000 bits (2585), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1048 (35%), Positives = 566/1048 (54%), Gaps = 34/1048 (3%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            T     S  F HL  HS YSLL+GA  +  +++K       ++AITD  NLF ALEF +K
Sbjct: 3    TDAPAPSQPFAHLHCHSHYSLLDGANRIPAMIEKCKTHGMNSLAITDHGNLFGALEFYEK 62

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
                GI PIIG +  I        +            + LL +   G++ L+++ S+ YL
Sbjct: 63   CRGGGINPIIGYEAYIAPGKRTDRS--ASRMKEASFHLTLLATNQVGFKNLVKMASKAYL 120

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                    RI    L E   EG+I L+G +S  +      +  + AE+ L  ++K FGDR
Sbjct: 121  EG-FYYKPRIDKDLL-EAHNEGIICLSGCASSELSHLLLTDQQEQAEQLLRWYEKTFGDR 178

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            LY+ +Q       +    + ++LA     PLVATN++ +L++ D  AHD+L+ V   + V
Sbjct: 179  LYLEIQDSGVQIQKDCMERTIELADRFGFPLVATNDAHYLNQGDAPAHDILLCVNTRSTV 238

Query: 241  SQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +  +R ++   + +L+   EM + F   P+A+  + EIA RC   L +     P F    
Sbjct: 239  NDANRMQLDGCEFHLRTPEEMYNAFPHCPDAVARSQEIADRCDIELDLTTRHFPVFDPPP 298

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 K +   LR+    GL+ R            Q Y  RLD EL VI +M +S YFLI
Sbjct: 299  G----KTDVQYLRDLCEEGLKWRYGD------QPDQVYYDRLDKELGVIEKMGYSSYFLI 348

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DF ++A+   IP    RGS  G++ AY L ++D+ P+++ LLFERFL+P R   PD D
Sbjct: 349  VWDFARFARDKGIPC-TARGSACGAIVAYLLGLSDVCPIQYDLLFERFLDPSRSEAPDID 407

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC+DRR  VI +V+ KYG   VAQI TFG+L+AK ALRDV RAL +P ++V+ + K+I
Sbjct: 408  IDFCRDRRQWVIDFVKEKYGEASVAQIGTFGTLKAKNALRDVARALDVPLARVNEVAKMI 467

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P+     +   A+      +E    D  +  +++ +  LEGL R+  THAAG+VIGD+PL
Sbjct: 468  PDTLNIKLK-DAVDSTPELKEQYDQDRQIREVIDFAMALEGLARNVGTHAAGVVIGDQPL 526

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL- 598
             + VP+ R       +TQ+    +EKAGL+K DFLGL+ L++L K++  + +     ++ 
Sbjct: 527  DEYVPLQRITGKTDIITQWT--DVEKAGLLKMDFLGLRNLSILDKAVKNVRENNPDFNMR 584

Query: 599  -SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                P DD ET+ LL    T GIFQLES GMR  L  M+PD   DIIA  +LYRPGP++ 
Sbjct: 585  PIDFPLDDKETFALLQRGETKGIFQLESGGMRDLLTKMKPDKFADIIATSALYRPGPLEG 644

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  Y   K+G++ + ++HP++D +L ET GV++YQEQVM+I   + G  LS A    +
Sbjct: 645  GMVMTYVEVKHGRQPVPTVHPIVDEVLAETYGVMVYQEQVMRILNRVGGIELSSAYRCIK 704

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            A+ KK  E +    E F+ G+ KN + K +A  ++EL+ KFA YGFNKSH+ AY  I+YQ
Sbjct: 705  AISKKKLEMIAAFHEEFLEGSQKNDMDKKVAQELWELIEKFAGYGFNKSHSTAYGAIAYQ 764

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYP EF+AA ++  M++ E+I +   D R+  I I+PP +NT  VDF+V    I
Sbjct: 765  TAYLKAHYPKEFMAALLSCGMESSERIAEHIDDCRRMKITILPPDINTSEVDFRVAGENI 824

Query: 836  YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + + AIKGVG +  + ++ E  A+ P+ S+ D C RVD K + +  LE+L+ AGALD F
Sbjct: 825  AFGMGAIKGVGESAVQAVVDEREANGPYKSIFDLCERVDPKAMTKGNLETLIKAGALDSF 884

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSVENSSV 950
            G +R Q   +++   + A    K++     ++F      ++       T+ +      S 
Sbjct: 885  GPNREQHTLAVEMAVQMAARKHKDKLRGQRSLFGGGGGGDETVEELAATVPEAPDWTHSQ 944

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            +   E+ V GFY + HPL  +   +  +     +E         + L  M+ + ++  T+
Sbjct: 945  KLNIEKEVFGFYLTSHPLTEFADQITPLCSHTTKELAEAEDQIEVILGGMISAIKKATTK 1004

Query: 1011 K-----GSRIGWVTFSEPAKEYEANFFP 1033
                   S+     F +P        +P
Sbjct: 1005 NPSRNGNSKYVNFDFEDPQGVVRCILWP 1032


>gi|220912350|ref|YP_002487659.1| DNA polymerase III subunit alpha [Arthrobacter chlorophenolicus A6]
 gi|219859228|gb|ACL39570.1| DNA polymerase III, alpha subunit [Arthrobacter chlorophenolicus A6]
          Length = 1185

 Score =  999 bits (2584), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1071 (35%), Positives = 556/1071 (51%), Gaps = 55/1071 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              + SFVHL  H+ YS+L+GA  L  + D+      PA+A TD   LF A +F QKA A 
Sbjct: 3    SSNDSFVHLHTHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWQKAQAK 62

Query: 66   GIQPIIGCQLDIDMQD--------NLKMTNQGKTPF---PTVPSIVLLVSTAEGYQRLIE 114
            GI+PIIG +  +                 NQ K       +   + LL     G + L  
Sbjct: 63   GIKPIIGVEAYVTPGTARGDKTRVRWGEENQRKDDISGGGSYTHMTLLSYNNVGMRNLFR 122

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
              S   L     +  R+    L    +EGLI  TG  SG +         + A +    F
Sbjct: 123  ASSIASLDSVFGKWPRLDRELLNTY-SEGLIATTGCPSGEVQTRLRLGQYREAVEAAAEF 181

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  +  +  L  H    +R     +++LA    LPLVATN+  +  E D +AH+ L+
Sbjct: 182  RDIFGAENYFCELMDHGLDIERRVTGDLLRLAKELNLPLVATNDLHYTHEHDAKAHEALL 241

Query: 233  AVAHSTVVSQKDRP-------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            A+   + + +                +YLK+  EM  +F D PEA +NT+ IA RC    
Sbjct: 242  AIQSGSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMRELFRDHPEACDNTLLIAERCEVSF 301

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
              +A  +PRF     +D    E + L  +   GL+ R  +G         + R++ D+EL
Sbjct: 302  NTNANFMPRFPCPPGED----ETSWLVKEVDKGLQYRYPKGI------PDEVRKQADYEL 351

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VI  M F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPLR  L+FE
Sbjct: 352  GVITSMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLRHGLIFE 411

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNPDR+SMPDFD+DF   RR EVI YV  KYG ERVA I+T+G+++ K AL+D  R L
Sbjct: 412  RFLNPDRVSMPDFDVDFDDRRRSEVIDYVTRKYGDERVAMIVTYGTIKTKQALKDSSRVL 471

Query: 466  QMPYSQVDRLCKLIPND-PAHPVSL--------QAIADDSRFREARLADPSVDRLLEISQ 516
              P+S  ++L K +P    A  + L        +  ++   FR+    DP   ++ E + 
Sbjct: 472  GYPFSMGEQLTKALPPAVMAKDIPLADIQNPESKRYSEAGDFRQLVSTDPEAAKVFETAL 531

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             +EGL R    HAAG+++   P+  ++P+ R  +    +TQF+    E  GLIK DFLGL
Sbjct: 532  GIEGLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFLGL 591

Query: 577  KTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            + LT++  +L+ +   RG+ +DL  +  DD  +Y LL    TLG+FQL+   MR  L+ M
Sbjct: 592  RNLTIISDALENIKMNRGIDLDLENLELDDAPSYELLARGDTLGVFQLDGGPMRSLLKLM 651

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVI 689
            +PD  EDI A+++LYRPGP+  +    Y  RKNG ++++ IHP ++     +L  T G+I
Sbjct: 652  KPDNFEDISAVLALYRPGPMGANAHTDYALRKNGIQEVIPIHPELEEPLKEILGGTYGLI 711

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVM +AQ L+GYSL +AD+LRRAMGKK K E+DKQ   F  G   NG S      +
Sbjct: 712  VYQEQVMAVAQKLAGYSLGQADILRRAMGKKKKSELDKQFAGFSQGMQDNGYSMAAVKTL 771

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +++L  F+DY FNK+H+AAY VISY TA++K HY  E++AA +T   D+ +K   +  + 
Sbjct: 772  WDILLPFSDYAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDKSAIYLNEC 831

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDF 868
            R+  I ++PP VN   ++F      I + + AI+ VG      ++ A   +  F S +D+
Sbjct: 832  RRMGITVLPPDVNESALNFTPVGTDIRFGMGAIRNVGVNAVEAMVAARESEGAFTSFKDY 891

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              +V +   N+R +ESL+ +GA D  G+ R  L    +        +++N      ++FA
Sbjct: 892  LMKVPAVVCNKRTIESLIKSGAFDSLGHHRRALAMIHEEAIDSVITLKRNEAIGQFDLFA 951

Query: 929  HEKGTFSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL---RKMGIKG 982
              +   S+    I +          +   E+ +LG Y S HPL   + +L    +M I  
Sbjct: 952  GFEEAESEASLSIEIPDLPEWEKKDKLSFERDMLGLYVSDHPLQGLEGVLSQHAEMSITT 1011

Query: 983  YEESVATIRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     G  + +A M+ S  ++     G+        +     E  FF
Sbjct: 1012 ILGEDGPQDGAILTIAGMITSLSRRIAKASGNAYARAEVEDLGGSIEVMFF 1062


>gi|319787804|ref|YP_004147279.1| DNA polymerase III subunit alpha [Pseudoxanthomonas suwonensis 11-1]
 gi|317466316|gb|ADV28048.1| DNA polymerase III, alpha subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 1191

 Score =  999 bits (2584), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1078 (38%), Positives = 608/1078 (56%), Gaps = 80/1078 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNLFSA 55
             FVHL VH+ YSL +  + +                +L +      PA+A+TD NNLF+ 
Sbjct: 3    GFVHLHVHTEYSLADSIIRVPEKPDQADPAKAKRPNLLSRAVELGLPALAVTDLNNLFAL 62

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +   A GI+P+ G  L I             +P      +  LV    GY  L  L
Sbjct: 63   IKFYKACEAVGIKPVAGADLMIAS-----------SPGEAPWRMTALVRDHGGYLNLSRL 111

Query: 116  VSRMYLLDQGK-QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            ++R ++    +   V +   W++E G+ GLI+L G  S    R    N   +A++ L  +
Sbjct: 112  LTRAWMEGHRQEGGVAVRPEWVRECGS-GLILLAGRESLA-GRLASENRHDLAQQHLADW 169

Query: 175  KKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++ F   L + L R R   +    S  +  A    +P+VA+N+  FL    ++AH+  + 
Sbjct: 170  QRDFDGNLCLELTRTRRDGEEAFNSFALHAAAERGIPVVASNDVRFLDRAGFDAHEARVC 229

Query: 234  VAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +A   V+    RPR  +P+ YLK+  EM ++F+D+P+A+ NTVE+ARRC+  L +    L
Sbjct: 230  IASGRVLDDPKRPRDYSPEQYLKSPEEMAALFADIPDAISNTVELARRCNLELTLGKYAL 289

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P +     + +    ++ +R ++ AG+E RLA+  +A G   +DY  RLDFEL+ I +M 
Sbjct: 290  PDYPVPSDETL----DSWIRKESYAGIEERLAKNPLAPGKTREDYFARLDFELDTIIKMG 345

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R
Sbjct: 346  FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERFLNPER 405

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L  PY  V
Sbjct: 406  VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDTGRVLGFPYGFV 465

Query: 473  DRLCKLIPNDPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            D + KL+PN     +   A+ +        +   +   ++  V  L++++++LE L R+A
Sbjct: 466  DGVAKLVPNILGITLK-DAMGEGKDSEMASAELIQRYGSEDDVRDLIDLARQLEDLTRNA 524

Query: 526  STHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
              HA G+VI   PL    P++     D     PVTQF+   +E+ GL+KFDFLGL+TLT+
Sbjct: 525  GKHAGGVVIAPTPLHTFCPLFAEHDHDGLGRNPVTQFDKNDVEEVGLVKFDFLGLRTLTI 584

Query: 582  LQKSLDFLAQRG-----VKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQALEGM 635
            +  ++  + +R        +D++ +P DD  TY  +  +  T  +FQ ESSGMR+ L+  
Sbjct: 585  IDWAVKAINRRHERAGIPPLDIAALPLDDAATYKDIFASGNTGAVFQFESSGMRRLLKDA 644

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +L +T G+++YQEQV
Sbjct: 645  RPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEAILADTYGIMVYQEQV 704

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQ+AQ++ GYSL  AD+LRRAMGKKI  EM K +E F  GA++ G+ +  A  IF+L+ K
Sbjct: 705  MQMAQIVGGYSLGGADLLRRAMGKKIPAEMAKHREMFREGAARGGVDEKKADEIFDLMEK 764

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+M+ +MDN +K+  F  +AR   + 
Sbjct: 765  FAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATMSSDMDNTDKVVGFLVEARNLGLA 824

Query: 816  IMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVD 873
            I+PP+VN     F+ V  + I Y L AIKGVG      I+ E  A   +  L DFC RVD
Sbjct: 825  ILPPTVNDSPYMFEAVTADTIRYGLGAIKGVGRGLCEAIVAEREAGGDYRDLLDFCRRVD 884

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            S KLNRR LE++V AGALD  G +R  L+  L  + K    + K       ++F      
Sbjct: 885  STKLNRRALEAMVNAGALDALGRNRATLMLQLPEVLKATDQMAKEAAAGQTSLFGMPSAD 944

Query: 934  FSD--KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                 ++ L + +        + E+  LG Y SGHP D Y+  +R +      +      
Sbjct: 945  AGPSMQLDLPECAEWPLRQVLDGERETLGHYLSGHPFDPYREDVRGLVGSDLGDL----- 999

Query: 992  GNNIRLAAMVVSKQQKKT-----------------RKGSRIGWVTFSEPAKEYEANFF 1032
               +  A       +K++                 RKG    +V   +     E   F
Sbjct: 1000 -EKLWAAGT-SGANEKRSWRPEVQVVVAGLVVGLRRKGDSQVFVQLEDGRGRLECGVF 1055


>gi|122879149|ref|YP_200601.6| DNA polymerase III subunit alpha [Xanthomonas oryzae pv. oryzae
            KACC10331]
 gi|188577178|ref|YP_001914107.1| DNA polymerase III subunit alpha [Xanthomonas oryzae pv. oryzae
            PXO99A]
 gi|188521630|gb|ACD59575.1| DNA polymerase III, alpha subunit subfamily, putative [Xanthomonas
            oryzae pv. oryzae PXO99A]
          Length = 1196

 Score =  999 bits (2584), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1083 (38%), Positives = 603/1083 (55%), Gaps = 80/1083 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVEIDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHAN-LFAL-AGRDSLAGRLFSEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGRECEERFNQFALNAAGVRGLPVVASNDVRFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   YLK+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   + + +    ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPDDETL----DSWIRSQSRDGLAARLEKSPIAPGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  NMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLY 522
              VD + KLIPN     +   A+ +            +    +  V  L++++++LE L 
Sbjct: 464  GLVDSVAKLIPNILGITLK-DAMGEGKDSEMASPELIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523  RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+T
Sbjct: 523  RNAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582

Query: 579  LTLLQKSLDFLAQRGV-----KVDLSLIPFDDHETYHL-LTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  +  R        VD++ IP DD  TY        T  +FQ ESSGMR+ L
Sbjct: 583  LTIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFALGNTGAVFQFESSGMRRLL 642

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQ
Sbjct: 643  KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQ 702

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703  EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             + + PP VN     F+        Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 823  GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883  RVGTTKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 931  KGTFSDK-ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------ 983
              +     + L +           +E+  LGFY SGHP D ++  +R++           
Sbjct: 943  DPSAPAMRLDLPESKEWPLGQLLTSERETLGFYLSGHPFDPHREEVRELVGCDLGALEKI 1002

Query: 984  --------------EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                           E  A     +  LA  V+  ++    KG    +V   +     E 
Sbjct: 1003 LASQQRGAGGGGGDGEKRAWRPEVSAILAGQVIGVRR----KGDSQVFVQLEDGRGRVEC 1058

Query: 1030 NFF 1032
            + F
Sbjct: 1059 SAF 1061


>gi|84623509|ref|YP_450881.1| DNA polymerase III subunit alpha [Xanthomonas oryzae pv. oryzae MAFF
            311018]
 gi|84367449|dbj|BAE68607.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzae MAFF
            311018]
          Length = 1196

 Score =  999 bits (2584), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1083 (38%), Positives = 603/1083 (55%), Gaps = 80/1083 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVEIDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHAN-LFAL-AGRDSLAGRLFSEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGRECEERFNQFALNAAGVRGLPVVASNDVRFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   YLK+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   + + +    ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPDDETL----DSWIRSQSRDGLAARLEKSPIAPGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  NMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLY 522
              VD + KLIPN     +   A+ +            +    +  V  L++++++LE L 
Sbjct: 464  GLVDSVAKLIPNILGITLK-DAMGEGKDSEMASPELIQRYQVEDDVRDLMDLARQLEDLT 522

Query: 523  RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PLS+  P++     D R   PVTQF+   +E  GL+KFDFLGL+T
Sbjct: 523  RNAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582

Query: 579  LTLLQKSLDFLAQRGV-----KVDLSLIPFDDHETYHL-LTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  +  R        VD++ IP DD  TY        T  +FQ ESSGMR+ L
Sbjct: 583  LTIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFALGNTGAVFQFESSGMRRLL 642

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQ
Sbjct: 643  KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQ 702

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L
Sbjct: 703  EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             + + PP VN     F+        Y L AIKGVG      I+E      P+ +L DFC+
Sbjct: 823  GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RV + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F   
Sbjct: 883  RVGTTKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942

Query: 931  KGTFSDK-ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------ 983
              +     + L +           +E+  LGFY SGHP D ++  +R++           
Sbjct: 943  DPSAPAMRLDLPESKEWPLGQLLTSERETLGFYLSGHPFDPHREEVRELVGCDLGALEKI 1002

Query: 984  --------------EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                           E  A     +  LA  V+  ++    KG    +V   +     E 
Sbjct: 1003 LASQQRGGGGGGGDGEKRAWRPEVSAILAGQVIGVRR----KGDSQVFVQLEDGRGRVEC 1058

Query: 1030 NFF 1032
            + F
Sbjct: 1059 SAF 1061


>gi|291457517|ref|ZP_06596907.1| DNA polymerase III, alpha subunit [Bifidobacterium breve DSM 20213]
 gi|291381352|gb|EFE88870.1| DNA polymerase III, alpha subunit [Bifidobacterium breve DSM 20213]
          Length = 1185

 Score =  999 bits (2584), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/1067 (32%), Positives = 544/1067 (50%), Gaps = 56/1067 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  H+ YSLL+GA  + ++  + A  + PA+ ITD  N+  A E      A G++P
Sbjct: 7    NFVQLHNHTHYSLLDGASKIPDLAKRAAELEMPAVGITDHGNMHGAYEMYTNCVANGVKP 66

Query: 70   IIGCQLDIDMQ------DNLKMTNQGKTPFPT-----VPSIVLLVSTAEGYQRLIELVSR 118
            IIG +  +  +        +    + +          +  + +     EG   LI+  S 
Sbjct: 67   IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 126

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L  +  +  R+    L    ++G+I  +G  SG I           A +    F+ +F
Sbjct: 127  ANLEGRVMRYPRMDKEVLSTY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIF 185

Query: 179  -GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
              D  ++ L  H    +      ++ +A   + PL+ATN+S ++  ED  A D ++ +  
Sbjct: 186  GKDNFFIELMDHGLTIENQVTDDLLTIAKKLDAPLLATNDSHYVHAEDAGAQDAMLCINS 245

Query: 237  STVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP--ILP 293
             + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H     +P
Sbjct: 246  GSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLLIAERCNVMFDDHEDGAFMP 305

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            +F   E  D    E +    K   GLE R        G    +  ++ D+E  VI +M+F
Sbjct: 306  QFPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLNVLKQADYECGVICQMQF 355

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+
Sbjct: 356  CGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERV 415

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            S+PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  +
Sbjct: 416  SLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGE 475

Query: 474  RLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYR 523
            ++ K +P        +SL  I D S         FRE   +DP   R+ E ++ +EGL R
Sbjct: 476  KVTKALPPAATGGKDISLHDIFDPSAKRYAEAREFREMYDSDPDAKRITEEAKGIEGLIR 535

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
                HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  LT++ 
Sbjct: 536  QTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTVIH 594

Query: 584  KSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             +L  + A     +D + IP DD ETY L+    TLG+FQL+S GMR  L+ ++PD   D
Sbjct: 595  DTLKNIEANGKPAIDYTKIPLDDAETYKLMARGDTLGVFQLDSDGMRSLLKTLKPDNFND 654

Query: 643  IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVM 696
            I AL++LYRPGP+  D+   Y  RKNG +KI  IHP ++     +L ET G+IIYQEQV 
Sbjct: 655  ISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQ 714

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
              A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  A  ++++L  F
Sbjct: 715  SAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEAANAVWDILVPF 774

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            + Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  IQ+
Sbjct: 775  SGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQV 834

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDS 874
            + P VN     +    + + + L AI+ VG      I+         F +  DF  RV  
Sbjct: 835  LSPDVNESVYAYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPL 894

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AH 929
              LNRR++ESL+ AGA D    +R  L    +        +++ +     ++F       
Sbjct: 895  TALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDADDGG 954

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
             +      +T+      +   +   E+ +LG Y S HPL   + IL  +        +  
Sbjct: 955  AEAMGDASVTVPDIEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLIDR 1014

Query: 990  IR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +    G  + LA ++    ++ ++KG+    VT  +     +  FF
Sbjct: 1015 AKTMGEGQQVTLAGLITGVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061


>gi|84495994|ref|ZP_00994848.1| DNA polymerase III subunit alpha [Janibacter sp. HTCC2649]
 gi|84382762|gb|EAP98643.1| DNA polymerase III subunit alpha [Janibacter sp. HTCC2649]
          Length = 1204

 Score =  999 bits (2583), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1083 (33%), Positives = 561/1083 (51%), Gaps = 66/1083 (6%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            ++  +FVHL VH+ YS+L+GA  + ++ ++      PA+A+TD   L+ A EF +KA   
Sbjct: 11   DRKDNFVHLHVHTEYSMLDGAARIGDLFNRAGELGMPALAMTDHGYLYGAHEFWRKAQGT 70

Query: 66   GIQPIIGCQLDIDMQDNL----------KMTNQGKT--PFPTVPSIVLLVSTAEGYQRLI 113
            G++PIIG +  I    +           + T QG           + LL    +G + L 
Sbjct: 71   GVKPIIGLEAYITPGTHRTDKTRVKWGDERTRQGDDVSGSGAYTHMTLLAKNNDGLRNLF 130

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             + S+  L     +  RI    L +   +GLI  TG  S  I          +A++    
Sbjct: 131  RMDSQASLDQVYAKWPRIDRELL-DAHGKGLIATTGCPSSEIQTRLRLGQYDLAKQAASD 189

Query: 174  FKKLF-GDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            ++ LF  +  +  +  H    +R     +++LA    LPL+ATN+S +   ED  AH  L
Sbjct: 190  YRDLFGAENYFCEVMDHQNEIERRTIKDLLRLAKELNLPLLATNDSHYTYPEDATAHGAL 249

Query: 232  MAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + V   + +   +R +   D +YLK+ +EM   + + P+A +NT+ +A  C         
Sbjct: 250  LCVQSGSTLMDPNRFKFDGDGYYLKSAAEMRHTWREFPQACDNTLLVADMCEVSFTEGEG 309

Query: 291  -ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +PRF     +     EE+    +   GL  R      A        +++ D+E+++I+
Sbjct: 310  RYMPRFDCPPGE----SEESWFVKEVQRGLSARFEGEIPAYA------QKQADYEVDIIS 359

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               ++ YFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD+DP+   L+FERFLN
Sbjct: 360  SKGYASYFLVVADFINWAKENGIRVGPGRGSGAGSMCAYAMRITDLDPIPHGLIFERFLN 419

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+RMSMPDFDIDF + RR EVIRYV  KYG +RVAQI+T+G+++AK A++D  R +  P+
Sbjct: 420  PERMSMPDFDIDFDERRRGEVIRYVTEKYGSDRVAQIVTYGTIKAKQAVKDSARVMGHPF 479

Query: 470  SQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEG 520
            +  D+L K +P D     V L  I D           FR     +P    ++E ++ LEG
Sbjct: 480  NVGDQLTKAMPADVMGKGVPLSGIYDPEHPRYAEGNEFRALVETEPHFKEVVETAKGLEG 539

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R    HAAG+++   PL  ++P+ + ++    +TQF+    E  GL+K DFLGL+ LT
Sbjct: 540  LKRQWGVHAAGVIMSSEPLIDVIPIMKRLQDGQILTQFDYPTCETLGLVKMDFLGLRNLT 599

Query: 581  LLQKSLDFLA-QRGVKVDLSLIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            +L  +++ +   R   +DL  +  D  D  TY LL +  TLG+FQL+  GMR  L+ MQP
Sbjct: 600  ILDDAIENVKTNRNEDLDLDALSKDMTDKATYRLLASGDTLGVFQLDGGGMRTLLKLMQP 659

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLID------------PMLK 683
            D  EDI A ++LYRPGP+  +    +  RKNGK+++  + P +             P+L 
Sbjct: 660  DNFEDISAALALYRPGPMGVNAHTNFALRKNGKQELTPLDPQLKGKLQQEMIDALGPILG 719

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T G++IYQEQVM+IAQ L+GY+L  AD+LRRAMGKK KE +DK+   F +G    G ++
Sbjct: 720  TTYGLVIYQEQVMEIAQQLAGYTLGNADLLRRAMGKKKKEVLDKEYVPFSTGMKAKGFNE 779

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                 ++ +L  F+DY FNK+H AAY ++SY TA++K +YP E++A  +T   D+ +K  
Sbjct: 780  ASIAALWGVLVPFSDYAFNKAHTAAYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKSA 839

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPF 862
             +  + R+  I+++PP VN     F      I + +AAI+ VG      I+ A  +   F
Sbjct: 840  LYLGECRRMGIKVLPPDVNDSVARFAAVGTDIRFGMAAIRNVGHNVVEAIIGAREEKGAF 899

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             S  DF S+  +   N+R +ESL+  GA D  G SR  LL+  +        +++     
Sbjct: 900  TSFRDFLSKCPAVVCNKRTIESLIKGGAFDGLGESRAGLLRIHEEYVDAFVSIKRQEAIG 959

Query: 923  HENIFAHEKGTFSDK---------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
             +++F        D          +T       + S     E+ +LG Y S HPL   + 
Sbjct: 960  QDSLFGAFGDEGGDGAGGDATMMGLTSVPTVEWDKSTLLTFEREMLGLYVSDHPLFGVEH 1019

Query: 974  ILRKMGIKGYEESVA---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            IL++          A      G  + +A ++   Q K+T+KG      T  +     E  
Sbjct: 1020 ILQQHADTAIATLSAEDGKPEGTMVTVAGLITGLQIKRTKKGDLWAIATVEDLEGAVECL 1079

Query: 1031 FFP 1033
            FFP
Sbjct: 1080 FFP 1082


>gi|194476714|ref|YP_002048893.1| DNA polymerase III subunit alpha [Paulinella chromatophora]
 gi|171191721|gb|ACB42683.1| DNA polymerase III subunit alpha [Paulinella chromatophora]
          Length = 1175

 Score =  999 bits (2583), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1057 (35%), Positives = 583/1057 (55%), Gaps = 45/1057 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  +  ++        PA+A+TD   ++ ++E  +   AAGI+P
Sbjct: 2    TFVPLHNHSDYSLLDGASQIPQMVKLAKELNMPALALTDHGVMYGSIELLKLCKAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS- 128
            IIG ++ +         N  +        +V+L   A GY+ L+++ S  +L     +  
Sbjct: 62   IIGNEMYVINGS----INDPQKKKERRYHLVVLAKNALGYKNLVKITSISHLRGMRGRGI 117

Query: 129  -VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              R C+   L E  +EGLI+ T    G I ++        A +    ++K+FGD  Y+ +
Sbjct: 118  FARACIDKQLLEQYSEGLIVSTACLGGEIPQSIINGQLDSAREIARWYQKIFGDDFYLEI 177

Query: 187  QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    DR    ++V++A    + L+ATN++ +L+++D EAHD L+ +    +V+ + R
Sbjct: 178  QDHGSLEDRTVNVEIVRIAEELGIELIATNDAHYLTKDDVEAHDALLCILTGKLVTDEKR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKE 299
             R T   Y+K+  EM  +F D  +      A+ NT ++A +      +    +P F    
Sbjct: 238  LRYTGTEYIKSEEEMGLLFRDHLDRDIACNAILNTKKVADKVGEYALLEDHQMPHFPLPS 297

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                       L   +  GL +RL      K      Y +RL++EL VI  M F  YFL+
Sbjct: 298  N----HTPITYLTKISQQGLSLRLKLSNKDKDDST--YHKRLNYELKVINEMGFPTYFLV 351

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D+I++A++  I VGPGRGS AGS+ AY L IT+IDP+   L+FERFLNP+R SMPD D
Sbjct: 352  VWDYIRFAREVGISVGPGRGSAAGSLVAYVLGITNIDPISNGLIFERFLNPERKSMPDID 411

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
             DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY + DRL KLI
Sbjct: 412  TDFCIERRHEVISYVMQRYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGEADRLAKLI 471

Query: 480  PNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            P     P  L+ +  D      FRE    +PS+   + +++++EG  +    HAAG+VI 
Sbjct: 472  PVVRGKPAKLETMIADDSPVPEFREKYKNNPSIMHWVNMARRIEGTNKTFGVHAAGVVIA 531

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGV 594
              PL +LVP+  +      +TQ+ M+ IE  GL+K DFLGLK LT++ K+++ + A  G 
Sbjct: 532  ASPLDELVPLQLN-NDGQIITQYFMEDIESMGLLKMDFLGLKNLTMISKTVEIVRAASGE 590

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +++  +P  D E + +L      GIFQLESSGMRQ +  ++P C+EDI ++++LYRPGP
Sbjct: 591  DLNMDRLPATDTEAFKILEDGDVEGIFQLESSGMRQIVRDLKPSCLEDISSILALYRPGP 650

Query: 655  IDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +D   I  + NRK+G E I   HP ++P+L ET G+++YQEQ+M+IAQ L+GYSL EAD+
Sbjct: 651  LDAGLIPKFINRKHGAEAINFTHPSLEPILGETYGIMVYQEQIMRIAQDLAGYSLGEADL 710

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK   EM K +  FI GA + G+ + +A  +F+ +  FA+Y FNKSH+AAY  +
Sbjct: 711  LRRAMGKKKTSEMQKHRNLFIKGAKERGVEEPLAKELFDQMVLFAEYCFNKSHSAAYGAV 770

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQ A++K HYP+ ++AA +T+     +K++++  +    +I++  P +N    DF    
Sbjct: 771  TYQAAYLKAHYPIAYMAALLTVNSGTSDKVQRYIANCNDIDIEVTAPDINYSGYDFTPVK 830

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             +I + L+A+K +G    R I E+ A    F SL D C RV   ++NRR LESL+  GA+
Sbjct: 831  GKILFGLSAVKNLGNGAIRQISESRAHYGQFLSLADMCDRVPIPQINRRGLESLINCGAM 890

Query: 892  DCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-------ITLEK 942
            D      +R QL+ +LD    +A    K+R     N+F     +   K       +T  K
Sbjct: 891  DSLEPTRNRAQLIANLDLTLDWANSRSKDRAIGQGNLFDLLVISAQGKKSIRASLVTAPK 950

Query: 943  FSV---ENSSVRFENEQRVLGFYFSGHPLDVY---KPILRKMGIKGYEESVATIRGNNIR 996
             S       + +   E+ ++GFY S HPL        +L ++ +   +E +  I    + 
Sbjct: 951  SSPVLDYLPAEKLRLEKELVGFYLSDHPLKQLAQPAKLLPQISLSILQEQID-IDKAKVS 1009

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            L  ++    +K TRKG  +  +   +     EA  FP
Sbjct: 1010 LVVILPEIHEKITRKGDLMAVLQLEDLTGCCEAVIFP 1046


>gi|257092573|ref|YP_003166214.1| DNA polymerase III subunit alpha [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
 gi|257045097|gb|ACV34285.1| DNA polymerase III, alpha subunit [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
          Length = 1156

 Score =  999 bits (2583), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1043 (38%), Positives = 602/1043 (57%), Gaps = 36/1043 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++P F+HL++HS YS+ +G + L++ + + A    PA+A++D  N+F  ++F   A +
Sbjct: 1    MLEAP-FIHLRLHSEYSITDGIVRLDDAVARAAGYGMPALALSDLANVFGLVKFYSSARS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI+G  + I    +                ++LL  +  GY +L EL+SR YL  +
Sbjct: 60   KGIKPILGSDVCIANDGDP----------DRPYRLLLLCRSRPGYLQLCELLSRAYLAPR 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I    L+E+G +GLI L+G ++G +  A    + ++A  R   ++K F    Y+
Sbjct: 110  VRGRAEITRRMLEEVGVDGLIALSGAAAGDVGEALLQGNQELAANRAARWEKTFPGAFYL 169

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR+         +    LA    LPLVAT+   FL  +D++AH+  + +A   ++   
Sbjct: 170  EVQRYGQAQQEALVAATADLAGELGLPLVATHPIQFLERDDFKAHEARVCIAEGYMLGDA 229

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  T + Y K+  EM+++F DLPEAL N+VEIA+RC+  + +    LP F       
Sbjct: 230  RRPRLHTEEQYFKSADEMLALFGDLPEALANSVEIAKRCNLQITLGKSYLPDFPTPAGVT 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ LR +AVAGLE+RL Q       +      Y  RL  E + I +M F GYFLI
Sbjct: 290  L----DDFLRQQAVAGLEIRLQQLFPDPDVRTAERAPYDARLQLETDTIVQMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N+ PVGPGRGSGAGSV AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKHNSCPVGPGRGSGAGSVVAYALGITDLDPLRYALLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQD R  VI YV+ KYG   V+QI+TFG++ +KA +RDVGR L +PY+  D+L KLI
Sbjct: 406  IDFCQDNRWRVIEYVRQKYGAAAVSQIVTFGTMSSKAVIRDVGRVLDLPYNFCDQLSKLI 465

Query: 480  PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P +   P+SL +AIA + + +     +  V  L  ++ +LE L R+   HA G++I    
Sbjct: 466  PVETNKPLSLAKAIAAEPQLQARIDDEEEVRDLFALAARLEDLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L+   P+Y        V+QF+   +EK GL+KFDFLGL+ LT+++ +L ++ Q  GV+ D
Sbjct: 526  LTDFCPVY-SADGGSVVSQFDKDDVEKVGLVKFDFLGLRNLTIIELALKYVEQLSGVRPD 584

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ + FDD + Y +L    T  IFQ+ES GM++ +  + PD  EDIIA+++LYRPGP+ +
Sbjct: 585  LATMAFDDPQAYQILKDGNTTAIFQVESEGMKKLVRKLAPDRFEDIIAVLALYRPGPLGS 644

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  +  RK G++KI      +   L+ T GVI+YQEQVMQIAQ++ GY+L  AD+LRR
Sbjct: 645  GMVDDFILRKKGQQKIEYYIDDLKACLEPTYGVIVYQEQVMQIAQIIGGYTLGAADLLRR 704

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM   ++    GA K G  + +A+ +F+L+ KFA+YGFNKSH AAYAV++Y 
Sbjct: 705  AMGKKKAEEMALHRDLMREGARKKGYDEKLAMQLFDLMEKFAEYGFNKSHTAAYAVVTYH 764

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNR 834
            TAW+K H+   F+AA+++ +MD  + +K F  DA    ++I+ P VN     F  V  + 
Sbjct: 765  TAWLKAHHCAAFMAATLSSDMDVTDTVKIFHDDAINNGLRILGPDVNASEYRFMPVDRST 824

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            + Y L A+KG G      I++   A   F  L DFC RVD + +NRR +E+L+ AGA D 
Sbjct: 825  VRYGLGAVKGTGEQAVNAILKTRSAAGAFRDLFDFCRRVDKRLVNRRTIEALIRAGAFDS 884

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK----ITLEKFSVENSS 949
                R +LL S+    + A+  E+N      ++F   +    +         + +  +  
Sbjct: 885  LDSHRARLLASVGIAMEAAEQAERNAM--QVSLFDIFEAGGEEDREHGPQYVEVARWSER 942

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             +   E+  LGFYFSGHP    +  + +          A        LA +VV  + K T
Sbjct: 943  QKLNEEKLALGFYFSGHPFHSVQAEVSRFVRTRLAALEARKEVQW--LAGLVVGVRSKLT 1000

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
             +G  + +V   + +   E + F
Sbjct: 1001 ARGK-MVFVQLDDGSTSLEVSVF 1022


>gi|94498252|ref|ZP_01304812.1| DNA polymerase III, alpha subunit [Sphingomonas sp. SKA58]
 gi|94422254|gb|EAT07295.1| DNA polymerase III, alpha subunit [Sphingomonas sp. SKA58]
          Length = 1181

 Score =  999 bits (2582), Expect = 0.0,   Method: Composition-based stats.
 Identities = 466/1045 (44%), Positives = 627/1045 (60%), Gaps = 35/1045 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L++ SS+++LEGA+    I  +  A   PA AITD N L+ ++ FS      G+QP
Sbjct: 5    AFVPLRIFSSFTMLEGAIDPKKIAKQARALGFPAAAITDRNGLYGSMAFSDACKGEGVQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L +          Q          I L    A GY  +  LVS  +L    ++  
Sbjct: 65   IIGAMLGVLRPGRPANAAQVHD------WITLYAQDARGYDNICALVSMAHLDRPVEEVP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + L  L E  T+G+I LT G  G + R F  +    A       + LF DRLYV + R 
Sbjct: 119  HVTLDAL-EGRTDGVIALTAGGEGALARLFAEDQPDAALAYAERLEALFPDRLYVEICRR 177

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E+ ++ LAY   LPLVATN + F     +EAHDV++ +A S  V   DR + 
Sbjct: 178  LDPVEGKAEAALLDLAYDRGLPLVATNPTCFTEPHFHEAHDVMLCIADSAYVDTADRRKS 237

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +PD ++K  +EM  +F DLPEAL NT+ +A+RC+       PILP           + E 
Sbjct: 238  SPDAWMKPAAEMKRLFEDLPEALANTLVVAQRCAVAAPKRKPILPSLAGD-----IEGEA 292

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR++A  GLE RL +  I      + Y +RL FE ++I +M F GYFLIVADFI+WAK
Sbjct: 293  AMLRDQAAEGLEARLEKAGILGEEMRRPYYERLKFETDIIIQMGFPGYFLIVADFIKWAK 352

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            + +IPVGPGRGSGAGS+ A+ALTITD+DPL+  LLFERFLNP+R+SMPDFDIDFC+ RR 
Sbjct: 353  EQDIPVGPGRGSGAGSLVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFCETRRG 412

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVIRYVQ KYG + VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P  P +
Sbjct: 413  EVIRYVQQKYGADHVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWT 472

Query: 489  LQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L+  +   S F+     D  V RL++ + KLEG  RH+STHAAG+VIGDRPLSQLVP+YR
Sbjct: 473  LERSLNGVSEFKAEYDNDNQVKRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLSQLVPLYR 532

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++  L+ RGV VDL  + +DD  
Sbjct: 533  DPRSDMPVTQFDMKYVEGAGLVKFDFLGLKTLSVLQKAVQLLSARGVTVDLDTLAWDDTA 592

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             Y LL    T+G+FQLES GMR+ L  ++P    DIIALVSLYRPGP+DNI ++  RKNG
Sbjct: 593  VYDLLQRGDTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDNIPMFGRRKNG 652

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E I   H L+ P+L+ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKKIK EMD 
Sbjct: 653  QEDIEYPHILLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKIKAEMDA 712

Query: 728  QKERFISGASKNG-ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            Q+ RF+ G +    I    A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K HYP E
Sbjct: 713  QRARFVEGCAAKSDIPAAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPAE 772

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----------NRI 835
            F A SM  ++   EK+  F  D R+  +  + P +N    DF V               +
Sbjct: 773  FYAGSMAFDIHLTEKLTVFVDDMRRMGLTCLAPDINRSEADFTVEPVAYEGEDARLGFAV 832

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y+L  +KGVG      ++E       F SL+DF  R++ + LNRR LESL  AGA D  
Sbjct: 833  RYALGGLKGVGEKAMEQLVEERNKGGAFKSLDDFADRIEPRLLNRRQLESLAAAGAFDGI 892

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
               R  +  + + I   A      R +    +F   +   +D + +        + R   
Sbjct: 893  HADRAGVHAAAETILSVASSNAAARESGQGGLFGDVETPHAD-VRIPPHQAWTVADRMAQ 951

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES------VATIRGNNIRL-AAMVVSKQQK 1007
            E+   GFYFS HP+D YK +    G + Y              G  + + AAMV   + +
Sbjct: 952  EKEAFGFYFSAHPVDRYKHLADARGARSYGLICQSPMPAPNAEGRAMTIMAAMVEDVRWR 1011

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
            +T++G+R    TFS+ + +++A+ F
Sbjct: 1012 ETKRGARYASATFSDQSGQFQASCF 1036


>gi|46446023|ref|YP_007388.1| DNA polymerase III subunit alpha [Candidatus Protochlamydia
            amoebophila UWE25]
 gi|46399664|emb|CAF23113.1| putative DNA polymerase III, alpha chain [Candidatus Protochlamydia
            amoebophila UWE25]
          Length = 1252

 Score =  999 bits (2582), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1090 (35%), Positives = 601/1090 (55%), Gaps = 68/1090 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP FVHL+ HS YS+L+ + S++++  +   +   +IA+TD  NLF  ++F +    
Sbjct: 1    MISSP-FVHLRTHSQYSILDASASISDLSQRAFQEGMSSIALTDHGNLFGIVDFYKACKE 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              ++ IIGC+L +     L+ T            + LL     GYQ L +L S  Y+   
Sbjct: 60   VKVKSIIGCELYVAPGSRLEKTKVYGQR--AAYHLTLLAQNNRGYQNLAKLSSSGYIEG- 116

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 R+    L++  +EGLI L+G     +       + +  +  LL ++++F DR Y+
Sbjct: 117  FYYYPRVDHDLLRK-HSEGLICLSGSLGTLLAHEILQGNVKSIQDHLLWYQEVFKDRFYL 175

Query: 185  NLQRHRGY-------------------------DRYRESQVVQLAYTHELPLVATNNSLF 219
            +LQRH                             +     ++ L+  H +PLVATN+  +
Sbjct: 176  DLQRHEMAAEDIQQDGLYQESWLVQQYQDYFNRQQKVNEALIALSREHHIPLVATNDVHY 235

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRV----------------TPDHYLKNRSEMVSI 263
            +  ED+ AH++L+ +         ++                   + ++Y K+  +M  +
Sbjct: 236  IDREDWRAHEILLNIQSGEPCEIWEKDAYGTPKFRIPNPKRQTYPSHEYYFKSSQQMEQL 295

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEK-------ECDDIQKEEENELRNKAV 316
            F D+PEA+ NT +IA +C   +       P ++         E D+ +KE EN L     
Sbjct: 296  FKDVPEAIINTQKIAEQCLVEIDFKTKHYPVYLPPSLENRPFEKDEQKKEVENYLWKLCE 355

Query: 317  AGLEVRL-------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             G+  R         Q            R+RL++E+++I     S Y LIV DFI WAK+
Sbjct: 356  EGISNRYTIERLAKVQEIYPDRNPLDVVRERLNYEMSIIVPKGMSDYLLIVWDFINWAKR 415

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N IP+GPGRGSGAGS+  Y + ITDI+PLRF L FERF+NP+R+S PD D+D C DRR E
Sbjct: 416  NGIPMGPGRGSGAGSIVLYLIGITDIEPLRFHLFFERFINPERISYPDIDVDICMDRRGE 475

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI Y   KYG + VAQIITFG+++AK AL+DVGR L +P S+V+ + KL+P D    +  
Sbjct: 476  VIAYTLQKYGKDNVAQIITFGTMKAKMALKDVGRVLSVPLSKVNEIAKLVPEDLNITLD- 534

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +A+  D   R+    D  V RL+++++KLEG  R+   HAAGI+I   PL+ L+P+    
Sbjct: 535  KALEKDQDLRQLYENDEEVGRLIDLAKKLEGSIRNTGIHAAGIIISGVPLTNLIPICNSK 594

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
             SD+PVTQF+MK +E  G++K DFLGLKTLT +Q  ++ +    G ++D   +P DD  T
Sbjct: 595  DSDIPVTQFSMKPVEAVGMLKVDFLGLKTLTAIQICVNAVKASTGKEIDWINLPLDDKPT 654

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL    TLGIFQLES GM+     +  D  E+IIA+ +LYRPGP+D I  + NRK+G+
Sbjct: 655  FDLLNQGKTLGIFQLESGGMQDLARQLHLDRFEEIIAVGALYRPGPMDMIPSFINRKHGR 714

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E I + HP +  +L ET G+++YQEQVMQIA  L+ +SL E DVLRRAMGKK  ++M KQ
Sbjct: 715  EAIENDHPWMKDILAETYGIMVYQEQVMQIASKLANFSLGEGDVLRRAMGKKDMDQMAKQ 774

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E+F  GA +N I    ++ IF+ + KFA YGFNKSHAAAY  +SY TA++K +YP E++
Sbjct: 775  REKFRLGALENQIDNQTSMLIFDKMEKFAAYGFNKSHAAAYGYLSYVTAYLKANYPGEWM 834

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A+ MT + D++ K+ KF ++ +  NI ++PP +N     F+     I +++  IKGVG  
Sbjct: 835  ASLMTCDRDDLSKVAKFIRECQSMNIPMLPPDINEAGEIFQATKQGIRFAMTGIKGVGAG 894

Query: 849  TARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                I++      PF +  +F  R+D+KK+ ++V+ESLV AG+ D  G++R  L+ S+D 
Sbjct: 895  VVEAIVQERQKRGPFKNFYEFFKRIDTKKVGKKVVESLVEAGSFDFTGWARDALVMSIDP 954

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR---FENEQRVLGFYFS 964
            + + +   +K +     ++FA      +++       V+N + R      E+ +LGF+ +
Sbjct: 955  MYESSSKEQKEQAMGFMSLFAKMDDEMTNQFRKPP-EVKNKTSRQDLLRKEKALLGFFLT 1013

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ-QKKTRKGSRIGWVTFSEP 1023
            GHP+D YK IL+++                 R A +V S Q +  ++   +   +T S+ 
Sbjct: 1014 GHPMDEYKDILQRLSCVPLRRLDQLNHDAVFRSAFIVESLQIRIASKSQKKFAILTISDG 1073

Query: 1024 AKEYEANFFP 1033
             +  E   +P
Sbjct: 1074 MERQELPIWP 1083


>gi|315656561|ref|ZP_07909448.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii
            subsp. holmesii ATCC 35242]
 gi|315492516|gb|EFU82120.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii
            subsp. holmesii ATCC 35242]
          Length = 1226

 Score =  999 bits (2582), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1073 (33%), Positives = 563/1073 (52%), Gaps = 60/1073 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VH+ YS+L+GA  +  ++ K   +QQ A+AITD   LF A EF Q+   AGI
Sbjct: 3    SSEFVHLHVHTDYSILDGAAKIKRLVAKAVENQQKAVAITDHGYLFGAFEFYQECRNAGI 62

Query: 68   QPIIGCQLDIDMQ-DNLKMTN------------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            +PIIG +  +         T                +       + LL  T EG   L  
Sbjct: 63   KPIIGLEAYVTPGTSRFDTTRVQWGTLEQQKAGDDVSARGAYTHMTLLSHTTEGMHNLFR 122

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S   L  Q  +  R     L+    EGLI   G  SG +         Q A +     
Sbjct: 123  LGSYASLDGQMGKWPRADRELLERYH-EGLIGTAGCPSGEVQTRLRLGQYQEAVRAAGEL 181

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  D  YV L  H    +      +++LA     P++ATN+S ++ +ED E  D ++
Sbjct: 182  QDIFGKDYFYVELMDHGLSIENRVRKDLLRLAREINAPVIATNDSHYVYKEDREIQDAML 241

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP- 290
             +     +S  DR R    D+YL+   EM  +F+++PEAL+NT+ IA +C+         
Sbjct: 242  CINSGDRLSNPDRFRFDGTDYYLRPSEEMHELFAEIPEALDNTLLIAEQCNVEFPDVKEG 301

Query: 291  -ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +P F     +D    E +    +   GL+ R   G       +++ R+R D+E+ +I 
Sbjct: 302  TFMPVFPVPAGED----EVSWFIKEVERGLQYRFPNGI------SEEVRKRADYEVEIIV 351

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F  YFLIV+D+IQWAK N I VGPGRGSGAGS+ AYA+ ITD+DP++  LLFERFLN
Sbjct: 352  QMGFPSYFLIVSDYIQWAKDNGIRVGPGRGSGAGSMVAYAMRITDLDPIKHGLLFERFLN 411

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPD D+DF   RR +VI YV  KYG ++V+Q++T+G++++K AL+D  R     +
Sbjct: 412  PERVSMPDIDVDFDDRRRQDVIDYVTRKYGKDKVSQVVTYGTIKSKQALKDAARISGADF 471

Query: 470  SQVDRLCKLIPND-PAHPVSLQAI--------ADDSRFREARLADPSVDRLLEISQKLEG 520
            S+ ++L K +P       + L  +         +   FR+    DP   ++ +++  +EG
Sbjct: 472  SKGEKLTKAMPPAVMGKDIPLSGMYNPQHPRYKEAEEFRKVVAEDPFNRQIFDLAAGVEG 531

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            + R    HA  +++    L+ ++PM +  +    +TQF+    E  GL+K DFLGLK LT
Sbjct: 532  MVRQWGVHACAVIMSRETLTDVIPMMKRPQDGAMITQFDYPTCEHLGLLKMDFLGLKNLT 591

Query: 581  LLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  +LD +        DL  +  DD  TY LL+T  TLG+FQL+  GMR  L+ ++P  
Sbjct: 592  IISDALDNIKINGNTPPDLERLDVDDKATYELLSTGETLGVFQLDGGGMRTLLKQLRPTE 651

Query: 640  IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQE 693
             +DI ALV+LYRPGP+  ++   Y  RKNG +KI  IH  ++     +L  T G+IIYQE
Sbjct: 652  FDDISALVALYRPGPMGANSHTNYALRKNGLQKIEPIHSELEEPLKDILGYTYGLIIYQE 711

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G  ++G S+     ++ +L
Sbjct: 712  QVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMIEHGYSEDCCETLWGIL 771

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T +  + +K+  +  + R+  
Sbjct: 772  VPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQT-DKDKLGMYLNEVRRMG 830

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV 872
            I+++PP VN     F    N I + LA+I+ VG      I++A  +   + S  DF  +V
Sbjct: 831  IKVLPPDVNQSYGVFAPDGNDIRFGLASIRNVGENVVAEIIKARQEKGAYTSFSDFLKKV 890

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HE 930
             ++  N+R + SL+ AGA D FG  R  L    +   +     ++  +N   ++FA    
Sbjct: 891  PAEVCNKRTIGSLIKAGAFDAFGAPRSALTAIHEQAVEAVVSTKRQESNGQFDLFAALEM 950

Query: 931  KGTFSDK-------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +GT S         I +   S    +     E+ +LG Y S HPL     +L  +     
Sbjct: 951  EGTESPDNLLGSASIDIPDISEWPKNELLAFEREMLGMYVSDHPLSGMNRVLEGLAEDRI 1010

Query: 984  EESVATI---RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
             +  +       + +++A +V +   K +++ G +       +     E  FF
Sbjct: 1011 VDLTSDEGKGNDSPVKIAGLVTAVNVKISKRSGQQWAIAKIEDMTGSVEVLFF 1063


>gi|325102919|ref|YP_004272573.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145]
 gi|324971767|gb|ADY50751.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145]
          Length = 1454

 Score =  999 bits (2582), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1085 (32%), Positives = 559/1085 (51%), Gaps = 77/1085 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL  H+ +S+L+   S+  ++     ++  A+AITD  N+  A  F           
Sbjct: 257  DFVHLHNHTQFSILQSTTSIAELVKAAVKNKMQAVAITDHANMMGAFHFVNNVLNHNKSA 316

Query: 61   -----KACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                 +A   G       I+PI+GC+  +         ++ KT       IVLL     G
Sbjct: 317  QAKNTEAEEKGETPTEQIIKPILGCEFFVCDN------HKDKTRKDNGYQIVLLAKNKNG 370

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
            Y  L ++ S  Y  D      RI  + +++   E +I+L+G   G I           AE
Sbjct: 371  YHNLAKMSSLAYT-DGFYYVPRIDRAIVEKY-KEDIIVLSGNLYGEIPNKILNVGEIQAE 428

Query: 169  KRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEA 227
              L+ +K  F D  Y+ + RH   D  R +Q +++LA  H++ L+ATNN+ +++++D  A
Sbjct: 429  DALIWWKNTFKDDFYIEVMRHGQEDENRVNQTLIKLARKHQVKLIATNNTYYINKKDAHA 488

Query: 228  HDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            HD+L+ V     ++                ++Y K++ EM  +F DLPEA+ N  EI  +
Sbjct: 489  HDILLCVKDGEKINTPIGRGRGFRFGMPNQEYYFKSQDEMKKLFQDLPEAIVNIQEIVDK 548

Query: 281  CSFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
                      +LP+F         E E D  ++ E   L +    G + R  +       
Sbjct: 549  IEIFKLQRDVLLPKFDIPEEFQVAEDEIDGGKRGENKYLHHLTYEGAKRRYPE------- 601

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              Q+ R+RLDFEL  I R  + GYFLIV DFI+ A+   + VGPGRGS AGS  AY L I
Sbjct: 602  ITQEIRERLDFELATIERTGYPGYFLIVQDFIKAARDMGVSVGPGRGSAAGSAVAYCLGI 661

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T++DP+ + LLFERFLNPDR+SMPD DIDF  + R +V++YV +KYG  +VAQIIT+G++
Sbjct: 662  TNLDPIAYDLLFERFLNPDRVSMPDIDIDFDDEGRGDVMKYVIDKYGANQVAQIITYGTM 721

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV------------SLQAIADDSRFRE 500
             AK+++RD  R L +P  + D++ KLIPN   + +              + +    + +E
Sbjct: 722  AAKSSIRDTARVLDLPLFEADKIAKLIPNLKLNKIFNMDDQALRSVLRSEELEGVQQLKE 781

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
                       ++ ++ LEG  R+   HA G++I    ++  VP+     SDL VTQF+ 
Sbjct: 782  LASGSDLSAETIQQAKVLEGSVRNTGIHACGVIITPDDITNFVPVSIAKDSDLYVTQFDN 841

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLG 619
              +E AGL+K DFLGLKTLTL++ ++  +  R  +++D    P DD +TY L     T+G
Sbjct: 842  SVVESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIELDPDKFPIDDVKTYELFQRGETVG 901

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            IFQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RKNG+E I       +
Sbjct: 902  IFQYESPGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEPITYDLDACE 961

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
              LKET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK K+ +DK K +FI  A +N
Sbjct: 962  EYLKETYGITVYQEQVMLLSQKLANFTKGEADVLRKAMGKKQKDVLDKMKPKFIKQAGEN 1021

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G  + +   I++    FA Y FNKSH+  YA ++YQTA++K HYP E++AA ++  M+++
Sbjct: 1022 GHDEKVLEKIWKDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMAAVLSNNMNDI 1081

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASA 858
            +++  F ++ ++  ++++ P VN     F V D   I + + AIKGVG      I+E   
Sbjct: 1082 KQVTFFMEECKRMGLEVLSPDVNESFYKFTVNDKYAIRFGMGAIKGVGAGAVETIIENRK 1141

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQK 910
               + S+ D   R+D +  N++  E+L+ AG  DCF G  R Q           ++   K
Sbjct: 1142 SGQYKSIFDLAKRIDLRAANKKAFENLILAGGFDCFEGTHRAQYFFDDGDGSILMEKAIK 1201

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            Y    ++N  +   ++F         + TL       +  +   E+ V+G Y SGHPLD 
Sbjct: 1202 YGAKYKENENSSQASLFGGGSAVEIPEPTLPACDEWGTMEKLAKEKDVVGIYISGHPLDD 1261

Query: 971  YKPILRKMGIKGYEESVATIRGN---NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            YK +L K    G       I        ++  +V S +   T+ G    +         Y
Sbjct: 1262 YKFVLEKYCSAGNLNIFNDIDKGLDFQFKVGGIVSSVRHMVTKDGRGWAFFKLEGYDDGY 1321

Query: 1028 EANFF 1032
            E   +
Sbjct: 1322 EFAIY 1326


>gi|111223805|ref|YP_714599.1| DNA polymerase III subunit alpha [Frankia alni ACN14a]
 gi|111151337|emb|CAJ63049.1| DNA polymerase III alpha subunit [Frankia alni ACN14a]
          Length = 1177

 Score =  998 bits (2581), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1064 (34%), Positives = 575/1064 (54%), Gaps = 51/1064 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA  L ++  +++  Q PA+AITD   ++ A +F ++A AAG++P
Sbjct: 4    SFVHLHVHTEYSMLDGAARLKDMFSEVSRQQMPAVAITDHGYMYGAYDFHKQATAAGVKP 63

Query: 70   IIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIGC+  +  +  L             +   +   +   + +    A+G + L  L SR 
Sbjct: 64   IIGCEAYVAPESRLLKQRVRWGEPHQKSDDVSGGGSYTHMTMWARNADGLKNLFRLNSRA 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF- 178
             +     +  R+    + E   +GL+  TG  SG +           A +   T++++F 
Sbjct: 124  SIEGHYIKWPRMDQEIIAE-HADGLMATTGCPSGIVQTRLRLGQYDAALQAAATYQEIFG 182

Query: 179  GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +  +  +  H    +R     +V +A   ++  V TN+S +  E + +AH  L+ V  +
Sbjct: 183  KENFFCEIMDHGLDIERRVRDGLVDIARALDMRFVVTNDSHYTYEHERDAHAALLCVQTA 242

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQV-HAPILPR 294
            + V+          ++LK+  EM  I S     E  E T+ IA R           ++PR
Sbjct: 243  STVANPSFQFEGSGYFLKSAEEMYGIDSSDIWQEGCETTLLIAERVDPTGMFAKHNLMPR 302

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            F   + +     EE+  R +  AG++ R  QG         ++R+R+++E+ VI +M F 
Sbjct: 303  FPVPDGE----TEESWFRAETWAGMDRRFPQGFD------DEHRERVEYEIRVILQMGFP 352

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFL+VADFI WAK   IPVGPGRGS AGS+ A+AL ITD+DP+  SLLFERFLNP+R+S
Sbjct: 353  SYFLVVADFIMWAKAQGIPVGPGRGSAAGSMVAFALGITDLDPIPHSLLFERFLNPERVS 412

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD DIDF + RR +VIRYV  ++G +R+AQI+TFG+++AKAA++D  R L  PY+  DR
Sbjct: 413  MPDIDIDFDERRRGDVIRYVTERWGDDRIAQIVTFGTIKAKAAIKDSSRVLGYPYAVGDR 472

Query: 475  LCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHA 525
            + K +P       + L  I D            R    +D  V +++E ++ LEGL R A
Sbjct: 473  ITKAMPPAVMGKDIPLGGIFDPKHPRFSEAGEIRGLYESDADVKKVIETAKGLEGLIRQA 532

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
              HAAG+++   P+   +P++R       +TQF+    E  GL+K DFLGL+ LT++  +
Sbjct: 533  GVHAAGVIMSAEPIIDHIPVWRRDADGAIITQFDYPTCETLGLLKMDFLGLRNLTVMDDA 592

Query: 586  LDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            +  + A RG+ +DL  +  DD   Y LL    TLG+FQL+   MR  L  M+PD  EDI 
Sbjct: 593  VRNVEANRGITIDLLGLTLDDPAAYELLGRGDTLGVFQLDGGPMRSLLRMMRPDNFEDIS 652

Query: 645  ALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVMQI 698
            A+++LYRPGP+  ++ + Y  RKNG+++I  IHP +      +L  T G+I+YQEQVM I
Sbjct: 653  AVLALYRPGPMGANSHINYALRKNGQQEITPIHPELSEALADILDTTYGLIVYQEQVMAI 712

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ ++GYSL  AD+LRRAMGKK KE +DK+   F  G   +G S+     ++++L  F+D
Sbjct: 713  AQKVAGYSLGGADLLRRAMGKKKKEILDKEFVPFSEGMKNSGYSEAAIKTLWDILVPFSD 772

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            Y FNK+H A Y ++SY TA++K +YP E++AA +T   D+ +K   +  + R+  I+++P
Sbjct: 773  YAFNKAHTAGYGLVSYWTAYLKANYPAEYMAALLTSVRDDKDKSAIYLNECRRMGIRVLP 832

Query: 819  PSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKK 876
            P VN+   D+   G   I   LAAI+ VGT     I+     K  F S  DF  +VD+  
Sbjct: 833  PDVNSSNADYTAHGAAEIRVGLAAIRNVGTNVVESIVRTRKSKSRFVSFPDFLDKVDAVV 892

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             N+R +ESL+ AGA D  G++R  L++  +        V+K       ++FA +      
Sbjct: 893  CNKRTIESLIKAGAFDALGHTRRGLVERHEQAVDAVMGVKKKNAEGQFDLFALDADDDPG 952

Query: 937  KIT---LEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--AT 989
                  +++FS    + +V+  +E+ +LG Y S HPL   + IL                
Sbjct: 953  AAPVFGVQEFSDQEWDKAVKLSHEREMLGLYVSDHPLREVEHILTARADCSIAALTGGEY 1012

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              G+ + +A ++ S Q+K T++G      T  + A   E  FFP
Sbjct: 1013 ADGSTVTIAGIISSLQRKVTKQGKLWALTTVEDLAGGLEVMFFP 1056


>gi|298346985|ref|YP_003719672.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
 gi|298237046|gb|ADI68178.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
          Length = 1226

 Score =  998 bits (2581), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1073 (33%), Positives = 563/1073 (52%), Gaps = 60/1073 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VH+ YS+L+GA  +  ++ K   +QQ A+AITD   LF A EF Q+   AGI
Sbjct: 3    SSDFVHLHVHTDYSILDGAAKIKRLVAKAVENQQKAVAITDHGYLFGAFEFYQECRNAGI 62

Query: 68   QPIIGCQLDIDMQ-DNLKMTN------------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            +PIIG +  +         T                +       + LL  T EG   L  
Sbjct: 63   KPIIGLEAYVTPGTSRFDTTRVQWGTLEQQKAGDDVSARGAYTHMTLLSHTTEGMHNLFR 122

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S   L  Q  +  R     L+    EGLI   G  SG +         Q A +     
Sbjct: 123  LGSYASLDGQMGKWPRADRELLERYH-EGLIGTAGCPSGEVQTRLRLGQYQEAVRAAGEL 181

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  D  YV L  H    +      +++LA     P++ATN+S ++ +ED E  D ++
Sbjct: 182  QDIFGKDYFYVELMDHGLSIENRVRKDLLRLAREINAPIIATNDSHYVYKEDREIQDAML 241

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP- 290
             +     +S  DR R    D+YL+   EM  +F+++PEAL+NT+ IA +C+         
Sbjct: 242  CINSGDRLSNPDRFRFDGTDYYLRPSEEMHELFAEIPEALDNTLLIAEQCNVEFPDVKEG 301

Query: 291  -ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +P F     +D    E +    +   GL+ R   G       +++ R+R D+E+ +I 
Sbjct: 302  TFMPVFPVPAGED----EVSWFIKEVERGLQYRFPNGI------SEEVRKRADYEVEIIV 351

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F  YFLIV+D+IQWAK N I VGPGRGSGAGS+ AYA+ ITD+DP++  LLFERFLN
Sbjct: 352  QMGFPSYFLIVSDYIQWAKDNGIRVGPGRGSGAGSMVAYAMRITDLDPIKHGLLFERFLN 411

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPD D+DF   RR +VI YV  KYG ++V+Q++T+G++++K AL+D  R     +
Sbjct: 412  PERVSMPDIDVDFDDRRRQDVIDYVTRKYGKDKVSQVVTYGTIKSKQALKDAARISGADF 471

Query: 470  SQVDRLCKLIPND-PAHPVSLQAI--------ADDSRFREARLADPSVDRLLEISQKLEG 520
            S+ ++L K +P       + L  +         +   FR+    DP   ++ +++  +EG
Sbjct: 472  SKGEKLTKAMPPAVMGKDIPLSGMYNPQHPRYKEAEEFRKVVAEDPFNRQIFDLAAGVEG 531

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            + R    HA  +++    L+ ++PM +  +    +TQF+    E  GL+K DFLGLK LT
Sbjct: 532  MVRQWGVHACAVIMSRETLTDVIPMMKRPQDGAMITQFDYPTCEHLGLLKMDFLGLKNLT 591

Query: 581  LLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  +LD +        DL  +  DD  TY LL+T  TLG+FQL+  GMR  L+ ++P  
Sbjct: 592  IISDALDNIKINGKTPPDLERLDVDDKATYELLSTGETLGVFQLDGGGMRTLLKQLRPTE 651

Query: 640  IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQE 693
             +DI ALV+LYRPGP+  ++   Y  RKNG +KI  IH  ++     +L  T G+IIYQE
Sbjct: 652  FDDISALVALYRPGPMGANSHTNYAFRKNGLQKIEPIHSELEEPLKDILGYTYGLIIYQE 711

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G  ++G S+     ++ +L
Sbjct: 712  QVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMIEHGYSEDCCETLWGIL 771

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T +  + +K+  +  + R+  
Sbjct: 772  VPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQT-DKDKLGMYLNEVRRMG 830

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV 872
            I+++PP VN     F    N I + LA+I+ VG      I++A  +   + S  DF  +V
Sbjct: 831  IKVLPPDVNQSYGVFAPDGNDIRFGLASIRNVGENVVAEIIKARQEKGAYTSFSDFLKKV 890

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HE 930
             ++  N+R + SL+ AGA D FG  R  L    +   +     ++  +N   ++FA    
Sbjct: 891  PAEVCNKRTIGSLIKAGAFDAFGAPRSALTAIHEQAVEAVVSTKRQESNGQFDLFAALEM 950

Query: 931  KGTFSDK-------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +GT S         I +   S    +     E+ +LG Y S HPL     +L  +     
Sbjct: 951  EGTESPDNLLGSASIDIPDISEWPKNELLAFEREMLGMYVSDHPLSGMNRVLEGLAEDRI 1010

Query: 984  EESVATI---RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
             +  +       + +++A +V +   K +++ G +       +     E  FF
Sbjct: 1011 VDLTSDEGKGNDSPVKIAGLVTAVNVKISKRSGQQWAIAKIEDMTGSVEVLFF 1063


>gi|119962046|ref|YP_947481.1| DNA polymerase III subunit alpha [Arthrobacter aurescens TC1]
 gi|119948905|gb|ABM07816.1| DNA polymerase III, alpha subunit [Arthrobacter aurescens TC1]
          Length = 1186

 Score =  998 bits (2581), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1071 (34%), Positives = 556/1071 (51%), Gaps = 55/1071 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              + SFVHL  H+ YS+L+GA  L  + D+      PA+A TD   LF A +F +KA   
Sbjct: 4    SSNDSFVHLHTHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWRKATDK 63

Query: 66   GIQPIIGCQLDIDMQ------DNLKMTNQGKTPFP-----TVPSIVLLVSTAEGYQRLIE 114
            GI+PIIG +  +         + ++  ++ +         +   + LL     G + L  
Sbjct: 64   GIKPIIGVEAYVTPGTARGDKERVRWGDESQRKDDVSGGGSYTHMTLLSYNNVGMRNLFR 123

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
              S   L     +  R+    L    +EGLI  TG  SG +         + A +    F
Sbjct: 124  ASSIASLDSVFGKWPRLDRELLNTY-SEGLIATTGCPSGEVQTKLRLGQYREAVEAAAEF 182

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  +  +  L  H    +R     +++LA    LPLVATN+  +  E D +AH+ L+
Sbjct: 183  RDIFGAENYFCELMDHGLDIERRVTGDLLRLAKELNLPLVATNDLHYTHEHDAKAHEALL 242

Query: 233  AVAHSTVVSQKDRP-------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            A+   + + +                +YLK+  EM  +F D PEA +NT+ IA RC    
Sbjct: 243  AIQSGSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMRELFRDHPEACDNTLLIAERCEVSF 302

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
               A  +PRF     +D    E + L  +   GL+ R  QG   K       R++ D+EL
Sbjct: 303  NTGANYMPRFPCPPGED----ETSWLVKEVDTGLKYRYPQGIPDK------VRKQADYEL 352

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VI  M F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPL+  L+FE
Sbjct: 353  GVITSMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLIFE 412

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNPDR+SMPDFD+DF   RR EVI YV  KYG ERVA I+T+G+++ K AL+D  R L
Sbjct: 413  RFLNPDRVSMPDFDVDFDDRRRSEVIDYVTKKYGDERVAMIVTYGTIKTKQALKDSSRVL 472

Query: 466  QMPYSQVDRLCKLIPND-PAHPVSL--------QAIADDSRFREARLADPSVDRLLEISQ 516
              P+S  ++L K +P    A  + L        +  ++   FR+    DP   ++ E + 
Sbjct: 473  GYPFSMGEQLTKALPPAVMAKDIPLADIQNPESKRYSEAGDFRQLIATDPEAAKVFETAL 532

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             +EGL R    HAAG+++   P+  ++P+ R  +    +TQF+    E  GLIK DFLGL
Sbjct: 533  GIEGLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFLGL 592

Query: 577  KTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            + LT++  +L+ +   RGV +DL  +  DD  +Y LL    TLG+FQL+   MR  L+ M
Sbjct: 593  RNLTIISDALENIKMNRGVDLDLENLELDDAASYELLARGDTLGVFQLDGGPMRSLLKLM 652

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVI 689
            +PD  EDI A+++LYRPGP+  +    Y  RKNG ++++ IHP ++     +L  T G+I
Sbjct: 653  KPDNFEDISAVLALYRPGPMGANAHTDYALRKNGIQEVIPIHPELEEPLKEILGGTFGLI 712

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVM +AQ L+GYSL +AD+LRRAMGKK K E+DKQ   F  G   NG S      +
Sbjct: 713  VYQEQVMAVAQKLAGYSLGQADILRRAMGKKKKSELDKQFAGFSQGMQDNGYSMAAVKTL 772

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +++L  F+DY FNK+H+AAY VISY TA++K HY  E++AA +T   D+ +K   +  + 
Sbjct: 773  WDILLPFSDYAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDKSAIYLNEC 832

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDF 868
            R+  I ++PP VN   ++F      I + + AI+ VG      ++ A   +  + S +DF
Sbjct: 833  RRMGITVLPPDVNESSLNFTPVGTDIRFGMGAIRNVGVNVVDAMVAARKSEGKYTSFKDF 892

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              +V +   N+R +ESL+ AGA D  G+ R  L    +        +++N      ++FA
Sbjct: 893  LLKVPAVVCNKRTIESLIKAGAFDSLGHHRRALAMIHEEAIDSVITLKRNEAIGQFDLFA 952

Query: 929  HEKGTFSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
              +    +      +          +   E+ +LG Y S HPL   + +L +   +    
Sbjct: 953  GFEDQEPEASLTTEIPDLPEWEKKDKLSFERDMLGLYVSDHPLQGLEGVLSQHAEQSITS 1012

Query: 986  SVAT---IRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +A      G  + +A M+ S  ++     G+        +     E  FF
Sbjct: 1013 IIAEDGPHDGAIVTIAGMITSLSRRIAKASGNAYARAEIEDLGASMEVMFF 1063


>gi|30249925|ref|NP_841995.1| dnaE1; DNA polymerase III (alpha chain) protein [Nitrosomonas
            europaea ATCC 19718]
 gi|30139032|emb|CAD85889.1| dnaE1; DNA polymerase III (alpha chain) protein [Nitrosomonas
            europaea ATCC 19718]
          Length = 1169

 Score =  998 bits (2580), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1055 (39%), Positives = 604/1055 (57%), Gaps = 50/1055 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL++HS YS+++G + +   + K      PA+A+TD +NLF  ++F Q A  
Sbjct: 1    MPIDPVFIHLRLHSEYSVVDGIVRVEEAVAKARDVGMPALALTDLSNLFGLVKFYQCAFK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC + +  +++                ++LL  +  GY  L  L+SR Y  + 
Sbjct: 61   AGIKPIAGCDVWVTNENDADR----------PFRLLLLCQSFSGYLLLSRLLSRAYRENM 110

Query: 125  GKQSVRICLSWLQE--IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             +    +  SW +E   GTEGLI L+GG  G +++         A      +  LF  R 
Sbjct: 111  CRGRAELKKSWFREEDAGTEGLIALSGGGQGEVEQLLLA-DPPAAVTAAQQWADLFPGRF 169

Query: 183  YVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +Q   R  +      ++ LA + +LP+VAT+   F+  ED+ AH+  + +A   V+ 
Sbjct: 170  YLEIQRCGRPNEETSGYALLDLASSLKLPVVATHPVQFMRPEDFRAHEARVCIAQGYVLG 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             + RP+  T   Y K  +EM  +F D+PEAL N+VEIARRCS +L++    LP F     
Sbjct: 230  DRRRPKEFTGQQYFKTPAEMGELFRDVPEALANSVEIARRCSLMLELGVNRLPDFPTPAG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQG---AIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
              +    E  LR  A  GLE RL Q     + +      Y+ RLDFE+  I +M F+GYF
Sbjct: 290  ISV----EQHLRELAQTGLEARLLQSFPQVLQRDERRPIYQMRLDFEVETIIQMGFAGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK++++PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 346  LIVADFIGWAKQHDVPVGPGRGSGAGSLVAYSLGITDLDPLLYDLLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQDRR++VI YV+++YG E VAQI TFG++ AKA +RDVGR L +PY+ VD+L K
Sbjct: 406  FDIDFCQDRREQVIEYVRDRYGAESVAQIATFGTMAAKAVVRDVGRVLDLPYNFVDQLAK 465

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+P +    +  +A   +    +    +  V  LLE++++LEGL R+   HA G++I   
Sbjct: 466  LVPFELGMTLR-KAREIEPLLNQRAEEEEDVRNLLELAERLEGLTRNVGMHAGGVLIAPG 524

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV--- 594
             ++   P+Y     D  V+Q++   +EK GL+KFDFLGL+TLT+L +++  + Q      
Sbjct: 525  KITDFCPVYCADSGDAVVSQYDKDDVEKVGLVKFDFLGLRTLTILDRAVADIRQYRAASP 584

Query: 595  ---------------KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
                              L  I  +D  T+ L+    T+GIFQ ES GM+  L+  +PD 
Sbjct: 585  GSAVAEPDVQSAEESHFSLESISLEDAATFSLMAKGNTVGIFQFESRGMKDLLQRARPDR 644

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
             ED+IALV+LYRPGP+D I  +  RK+GK ++  + P + P+L  T G++IYQEQVMQIA
Sbjct: 645  FEDLIALVALYRPGPMDLIPDFIERKHGK-RVDYLDPRLQPILGPTYGIMIYQEQVMQIA 703

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ GYSL  AD+LRRAMGKK  EEM +Q+  F+ GA +N +++  AV +F L+ KFA Y
Sbjct: 704  QVIGGYSLGGADLLRRAMGKKKVEEMAQQRAVFVEGAIRNEMAEADAVTLFGLMEKFAGY 763

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSHAAAYA+I+YQTA++KTHYP EF+AA M+ +MD+ +K+  F +D +   I I+PP
Sbjct: 764  GFNKSHAAAYALIAYQTAYLKTHYPAEFMAACMSSDMDDTDKVNVFYEDCKLNGIVILPP 823

Query: 820  SVNTPCVDF-KVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKL 877
             +N     F  V    I Y L A+KG G      I++       F  L DFC RVD + +
Sbjct: 824  DINESGYYFVPVDHKTIRYGLGAVKGSGEAAISAIVQVREQGSTFTGLFDFCRRVDRRIV 883

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR +E+L+ AGA D    +R  LL+S+ N  +YA+    +      ++F  E       
Sbjct: 884  NRRTIEALIRAGAFDSVETNRAALLESVGNAMEYAEQC--SLAASQVSLF-DENTDLIQP 940

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
              +   +      + +NE+  LGFY SGHP D Y   L           V         +
Sbjct: 941  PAITGVAQWPEREKLQNEKMALGFYLSGHPYDSYARELSCFIPVRLSRIVPGREPQ--LI 998

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A ++ + + + +R+G  +  VT  +     E   +
Sbjct: 999  AGVIYAIRTQMSRRGK-MAIVTLDDGLARVEVVVY 1032


>gi|315655526|ref|ZP_07908425.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii
            ATCC 51333]
 gi|315490181|gb|EFU79807.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii
            ATCC 51333]
          Length = 1225

 Score =  998 bits (2580), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1073 (33%), Positives = 563/1073 (52%), Gaps = 60/1073 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VH+ YS+L+GA  +  ++ K   +QQ A+AITD   LF A EF Q+   AGI
Sbjct: 3    SSEFVHLHVHTDYSILDGAAKIKRLVAKAVENQQKAVAITDHGYLFGAFEFYQECRNAGI 62

Query: 68   QPIIGCQLDIDMQ-DNLKMTN------------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            +PIIG +  +         T                +       + LL  T EG   L  
Sbjct: 63   KPIIGLEAYVTPGTSRFDTTRVQWGTLEQQKAGDDVSARGAYTHMTLLSYTTEGMHNLFR 122

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S   L  Q  +  R     L+    EGLI   G  SG +         Q A +     
Sbjct: 123  LGSYASLDGQMGKWPRADRELLERYH-EGLIGTAGCPSGEVQTRLRLGQYQEAVRAAGEL 181

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  D  YV L  H    +      +++LA     P++ATN+S ++ +ED E  D ++
Sbjct: 182  QDIFGKDYFYVELMDHGLSIENRVRKDLLRLAREINAPVIATNDSHYVYKEDREIQDAML 241

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP- 290
             +     +S  DR R    D+YL+   EM  +F+++PEAL+NT+ IA +C+         
Sbjct: 242  CINSGDRLSNPDRFRFDGTDYYLRPSEEMHELFAEIPEALDNTLLIAEQCNVEFPDVKEG 301

Query: 291  -ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +P F     +D    E +    +   GL+ R   G       +++ R+R D+E+ +I 
Sbjct: 302  TFMPVFPVPAGED----EVSWFIKEVERGLQYRFPNGI------SEEVRKRADYEVEIIV 351

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F  YFLIV+D+IQWAK N I VGPGRGSGAGS+ AYA+ ITD+DP++  LLFERFLN
Sbjct: 352  QMGFPSYFLIVSDYIQWAKDNGIRVGPGRGSGAGSMVAYAMRITDLDPIKHGLLFERFLN 411

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPD D+DF   RR +VI YV  KYG ++V+Q++T+G++++K AL+D  R     +
Sbjct: 412  PERVSMPDIDVDFDDRRRQDVIDYVTRKYGKDKVSQVVTYGTIKSKQALKDAARISGADF 471

Query: 470  SQVDRLCKLIPND-PAHPVSLQAI--------ADDSRFREARLADPSVDRLLEISQKLEG 520
            S+ ++L K +P       + L  +         +   FR+    DP   ++ +++  +EG
Sbjct: 472  SKGEKLTKAMPPAVMGKDIPLSGMYNPQHPRYKEAEEFRKVVAEDPFNRQIFDLAAGVEG 531

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            + R    HA  +++    L+ ++PM +  +    +TQF+    E  GL+K DFLGLK LT
Sbjct: 532  MVRQWGVHACAVIMSRETLTDVIPMMKRPQDGAMITQFDYPTCEHLGLLKMDFLGLKNLT 591

Query: 581  LLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  +LD +        DL  +  DD  TY LL+T  TLG+FQL+  GMR  L+ ++P  
Sbjct: 592  IISDALDNIKINGKTPPDLERLDVDDKATYELLSTGETLGVFQLDGGGMRTLLKQLRPTE 651

Query: 640  IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQE 693
             +DI ALV+LYRPGP+  ++   Y  RKNG +KI  IH  ++     +L  T G+IIYQE
Sbjct: 652  FDDISALVALYRPGPMGANSHTNYAFRKNGLQKIEPIHRELEEPLKDILGYTYGLIIYQE 711

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G  ++G S+     ++ +L
Sbjct: 712  QVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMIEHGYSEECCETLWGIL 771

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T +  + +K+  +  + R+  
Sbjct: 772  VPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQT-DKDKLGMYLNEVRRMG 830

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV 872
            I+++PP VN     F    N I + LA+I+ VG      I++A  +   + S  DF  +V
Sbjct: 831  IKVLPPDVNQSYGVFAPDGNDIRFGLASIRNVGENVVAEIIKARQEKGAYTSFSDFLKKV 890

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HE 930
             ++  N+R + SL+ AGA D FG  R  L    +   +     ++  +N   ++FA    
Sbjct: 891  PAEVCNKRTIGSLIKAGAFDAFGAPRSALTAIHEQAVEAVVSTKRQESNGQFDLFAALEM 950

Query: 931  KGTFSDK-------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +GT S         I +   S    +     E+ +LG Y S HPL     +L  +     
Sbjct: 951  EGTESPDNLLGSPSIDIPDISEWPKNELLAFEREMLGMYVSDHPLSGMNRVLEGLAEDRI 1010

Query: 984  EESVATI---RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
             +  +       + +++A +V +   K +++ G +       +     E  FF
Sbjct: 1011 VDLTSDEGKGNDSPVKIAGLVTAVNVKISKRSGQQWAIAKIEDMTGSVEVLFF 1063


>gi|253581934|ref|ZP_04859158.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
            ATCC 27725]
 gi|251836283|gb|EES64820.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
            ATCC 27725]
          Length = 1138

 Score =  998 bits (2580), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/1034 (38%), Positives = 607/1034 (58%), Gaps = 32/1034 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSLL+G   +++ LD+  A    AIAITD  NLF  LEF +KA   GI+P
Sbjct: 4    NFVHLHLHTEYSLLDGVGKIDDYLDRTKALNMQAIAITDHGNLFGVLEFYKKAIKKGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +     L+   +       +  +VLL    +GYQ L+++ S  Y+        
Sbjct: 64   IIGLEAYVSEFSMLEKEGR-------IFHLVLLAENNKGYQNLLKISSESYIKG-FYYKP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRLYVNLQ 187
            RI   +L ++ +EG+I L+    G I R    N S+   ++ +  +  +F  D  Y+ +Q
Sbjct: 116  RIDKEFL-KMHSEGIIALSACMQGEIPRRILDNESEEKVDEIVNEYVDIFGKDNFYIEVQ 174

Query: 188  RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +    +     ++  LA  H+L +VATN++ +++E ++   D+L+ V     V+ + R 
Sbjct: 175  ANGVKGQTALNEKLYNLAQKHQLKMVATNDTHYVNEGEHTLQDILICVQTGAKVADEKRM 234

Query: 247  RVTPDH-YLKNRSEMVS-IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R+  D  +LK+R +++  + +   EA+ NT+EIA RC+  ++       +F E E     
Sbjct: 235  RIETDELFLKSREQIIDGLGAKYLEAVNNTIEIAERCNVNIEFGK---FKFPEYEIPSCV 291

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K  E  LR     GL  R   G            +R+++EL+VI +M ++ YF++V DFI
Sbjct: 292  KTIEEFLRKLVYFGLSKRYPHGLTI------SVLERVEYELSVIEKMGYAAYFVVVWDFI 345

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AK+N IP+GPGRGS AGS+ AYAL IT++DPL ++L+FERFLNP+R+SMPD DID CQ
Sbjct: 346  DYAKRNRIPIGPGRGSAAGSLVAYALRITELDPLDYNLIFERFLNPERISMPDIDIDICQ 405

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YV  KYG ++VAQIITFG+++A+AA+RDVGR +  P S+VD + KL+P +  
Sbjct: 406  ERRQEVIEYVIRKYGEDKVAQIITFGTMKARAAIRDVGRVMDTPLSKVDSIAKLVPFNAT 465

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               +L  + +   F+   L DP + ++++IS +LE   RHAS HAAGIVI   PL+  VP
Sbjct: 466  IQQTLNNVEE---FKNMYLNDPEIQKVIDISARLENKVRHASIHAAGIVITKDPLTDTVP 522

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603
            +Y D ++ +  TQ+ MK +E  GL+K DFLGL+ LT LQ+++D++ +  G  ++LS IP 
Sbjct: 523  LYSDNKNKVVSTQYQMKELEDLGLLKMDFLGLRNLTNLQRTIDYIKEDLGEDIELSEIPL 582

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            +  + Y +L+   T G+FQ+ES G+R+ L  ++PD  EDIIAL++LYRPGP+ + +V  +
Sbjct: 583  NSKKVYEMLSRGDTSGVFQMESQGIRKILLKLKPDRFEDIIALLALYRPGPLGSGMVDDF 642

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             N KNG  +I   HP ++  LKET GVI+YQEQVM+IA +++ YSL EAD+LRRAMGKK 
Sbjct: 643  INGKNGTSEIKYPHPSLELTLKETYGVILYQEQVMKIANIMANYSLGEADLLRRAMGKKN 702

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             + M++ +E+F+  +  NG +K  A+ +FEL+ KFA YGFNKSH+AAYA+I+Y TA+ K 
Sbjct: 703  IQIMEENREKFVERSMANGYTKEKAIEMFELIDKFAGYGFNKSHSAAYALIAYWTAYFKA 762

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +Y   + A+ MT EM +VE I  + +DA+  N+++  P VN     F V    I +SLAA
Sbjct: 763  YYMKHYYASLMTSEMSHVEDIAFYMEDAKVHNLKLHLPDVNRASPKFIVDKEGIIFSLAA 822

Query: 842  IKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK VG   +  I+E  + +  + + EDF  R     LN++ LESL+ AGALD    +R Q
Sbjct: 823  IKNVGEGVSGKILEECNENGKYKNFEDFVVRTRKHGLNKKALESLILAGALDGLPGNRRQ 882

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
              +S+D I  YA    K    +  N+F   K +     TL +    +       E+  LG
Sbjct: 883  KFESVDKILDYATRKIKEDEIQQMNLFGEAKSSLGV-FTLPQIPEYSLEELLAREKEYLG 941

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVT 1019
            FYFS HPLD Y+ ++    +    E          R   ++   ++  T+K G  +    
Sbjct: 942  FYFSAHPLDNYRRLIEVYRLSRIAELKEEKNVQIFRTCGILREIKKIVTKKTGQIMCLFE 1001

Query: 1020 FSEPAKEYEANFFP 1033
              +   +     FP
Sbjct: 1002 LEDYYDKINCIVFP 1015


>gi|326335784|ref|ZP_08201964.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga sp.
            oral taxon 338 str. F0234]
 gi|325692023|gb|EGD33982.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga sp.
            oral taxon 338 str. F0234]
          Length = 1485

 Score =  998 bits (2580), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1099 (33%), Positives = 570/1099 (51%), Gaps = 87/1099 (7%)

Query: 1    LTQYLE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
            LT+ L   +S  F HL  HS +S+L+   S+ +++   A +  PA+A+TD  N+  A  F
Sbjct: 244  LTENLTLLQSAPFAHLHNHSQHSVLQSTASIADLVTAAAKENMPAVALTDHGNMMGAFHF 303

Query: 59   SQKACAAG---------------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
            +++                          I+PIIGC+  I         +  KT      
Sbjct: 304  TKEVAKHNKEAKAKNAKLEEEGKPATHTLIKPIIGCEFYIC------ENHLDKTKKDNGY 357

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             +VLL    +GYQ LI++ S  Y         RI    +++   + LI+L+G   G I  
Sbjct: 358  QVVLLAKNKDGYQNLIKMASIAYTEG-FYYVPRIDKGIVEQYKDQ-LIVLSGNLQGEIPS 415

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNN 216
                  ++ AE+ LL +K+ F +  Y+ L RH   +  R  + +++LA  H + LVATNN
Sbjct: 416  KILNLGNRQAEEALLWWKEHFQEDFYIELMRHGQENENRANAVLIELAKKHGVKLVATNN 475

Query: 217  SLFLSEEDYEAHDVLMAVAHS----TVVSQKDRPR---VTPDHYLKNRSEMVSIFSDLPE 269
            + ++S +D  AHD+L+ V       T + Q    R      ++Y K+  +M  +F D+PE
Sbjct: 476  TYYISPQDANAHDILLCVKDGEKQATTIGQGRGFRNGLPNEEYYFKSSQQMKELFKDIPE 535

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEK-----ECDDIQKEEEN-ELRNKAVAGLEVRL 323
            A+ +  EI  + +        +LP+F        E D   K+ EN  LR+    G + R 
Sbjct: 536  AILSIKEIIDKITPYELARNILLPKFSIPKEFQMEGDPTGKKGENKYLRHLTYLGAKKRY 595

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
             +          + R+RLDFEL++I +  + GYFLIV DFI  A+   + VGPGRGS AG
Sbjct: 596  KE-------LTNEVRERLDFELSIIEKTGYPGYFLIVEDFITAARNMGVSVGPGRGSAAG 648

Query: 384  SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            S  AY L IT+IDP+++ LLFERFLNPDR+SMPD DIDF  D R  V+ YV  KYG  +V
Sbjct: 649  SAVAYCLGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFEDDGRGRVLDYVIGKYGANQV 708

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD--DSRFREA 501
            AQI T+G++ AK+++RD  R L +P  + D++ KLIPN     +SL+ I    D   +E 
Sbjct: 709  AQIATYGTMAAKSSIRDTARVLDLPLKEADQIAKLIPN-----ISLKKIFSLTDEELKEK 763

Query: 502  RLAD-PSVDRLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +D P +D+L +I++              LEG  R+   HA G++I    ++  VP+  
Sbjct: 764  VGSDLPKIDKLKKIAEGHDLSAKTVQQACILEGSVRNTGIHACGVIITPDDITNFVPVML 823

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606
               SDL VTQF+   +E AGL+K DFLGLKTLT+L+ ++  + +R     D+  IP DD 
Sbjct: 824  AKDSDLFVTQFDNSVVESAGLLKMDFLGLKTLTILKDAVSLIQKRHGFELDIDHIPLDDK 883

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             TY L     T+GIFQ ES GM++ +  ++P    D+IA+ +LYRPGP+D I  + +RK 
Sbjct: 884  PTYALFQRGETIGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPMDYIPSFIHRKQ 943

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G E I      ++  LK+T G+ +YQEQVM ++Q L+G++  EAD LR+AMGKK+K+ + 
Sbjct: 944  GIEPITYDLADMEEYLKDTYGITVYQEQVMLLSQKLAGFTKGEADKLRKAMGKKLKDVLA 1003

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + K +FI G  K G    +   I++    FA Y FNKSH+  YA I+YQTA++K +YP E
Sbjct: 1004 EMKPKFIEGGGKKGHPAEVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKANYPAE 1063

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGV 845
            F+AA ++  M++++ I  F  +  +  I+++ P VN     F V     I + + A+KG+
Sbjct: 1064 FMAAVLSNNMNDIKSISFFLSECHRMGIKVLSPDVNESEYKFTVNKEGAIRFGMGAVKGL 1123

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS 904
            G      I+E      + S+ D   R+D K  N++  ESL  AG  D F    R Q    
Sbjct: 1124 GKAAVDTIVETRKSGAYQSIFDMVKRIDLKSANKKAFESLALAGGFDSFPEVHRAQFFHQ 1183

Query: 905  --------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
                    L+ I +Y    +++  +   ++F     T   +  +      +   +   E+
Sbjct: 1184 EPSENMVFLEKILRYGAKAQESAKSIQLSLFGDSPETQIPEPKMPYTEEWSPMEKLRREK 1243

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG---NNIRLAAMVVSKQQKKTRKGS 1013
             V+G Y SGHPLD++K  L+ +  K   E    + G     +R   ++   + K ++ G 
Sbjct: 1244 EVVGIYISGHPLDIFKYQLQYLCNKEVIELSGGLEGLENQVVRFGGIITKTEHKTSKTGK 1303

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
              G  T  + +   E   F
Sbjct: 1304 GWGIFTIEDYSGVAEFRIF 1322


>gi|226940314|ref|YP_002795388.1| DNA-directed DNA polymerase III, alpha subunit [Laribacter
            hongkongensis HLHK9]
 gi|226715241|gb|ACO74379.1| DNA-directed DNA polymerase III, alpha subunit [Laribacter
            hongkongensis HLHK9]
          Length = 1147

 Score =  997 bits (2579), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1039 (36%), Positives = 586/1039 (56%), Gaps = 32/1039 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P F+HL++HS +S+ +G   + + + + A ++ PA+ ++D  NLF  ++F +     G
Sbjct: 2    NTPRFIHLRLHSEFSVTDGITRIGDAVKRAALERMPALGLSDLMNLFGMVKFYKACLGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI+     ++                     +L+     GY RL EL++  Y L+Q +
Sbjct: 62   VKPIVAVDAWLENP----------ADRDQPSRCLLIAMNTAGYHRLSELLTDAYRLNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +   WL     E LI ++G   G   +A    + ++A+     + + F  R Y+ +
Sbjct: 112  GRAELQREWLTREACENLIFVSGAQHGDTGQALLAGNLELAQALARDWAQRFPGRCYLEI 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR    +      +++ LA    LP+VAT+   FL  +D+ AH+  + +A   ++    R
Sbjct: 172  QRTGKPEADTCTERMLWLAGETGLPVVATHPVQFLDRDDFMAHEARVCIAEGEMLGNPKR 231

Query: 246  -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                T + Y K+  EM ++F+D+PEALEN+VEIARRC+  + +    LP F   +   + 
Sbjct: 232  VRHYTEEQYFKSTDEMAALFADVPEALENSVEIARRCNIEILLGKNFLPDFPTPDGLSL- 290

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L  ++  GL  R   L   A  +      YR+RL FEL+ I +M F GYFLIVA
Sbjct: 291  ---DDYLIKRSEEGLVERMQALYPDAGQREAEMPRYRERLKFELDTIIQMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N  PVGPGRGSGAGS+ A+++ ITDI+PL ++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKANGCPVGPGRGSGAGSLVAFSIGITDINPLDYALLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQD R  VI YV+ +YG + V+QI TFG++ AKA +RDVGR L +PYS  D L KLIP 
Sbjct: 408  FCQDNRWRVIEYVRERYGADAVSQIATFGTMAAKAVVRDVGRVLDLPYSFCDGLSKLIPA 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P    SL  A+  +   +E    +  V +L  +++KLEGL R+   HA G++I    ++
Sbjct: 468  APGKQYSLDDAVEMEPILKERLEKEEEVSQLWALAKKLEGLTRNIGMHAGGVLIAPGKIT 527

Query: 541  QLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
               PMY+    D  PV+  +   +E  GL+KFDFLGL+ LT++  +++++       DL 
Sbjct: 528  DFCPMYQASGDDASPVSMLDKGDVEDVGLVKFDFLGLRNLTIIDLAVNYIKALDPAFDLD 587

Query: 600  --LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +PF D   Y +L    T  +FQLES GM++ LE ++PD  EDIIA+++LYRPGP+ +
Sbjct: 588  LNHMPFTDPAAYRVLQQANTTAVFQLESEGMKKLLEKLKPDRFEDIIAVLALYRPGPLGS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  +  RK GK+++   HP +   L  T GVI+YQEQVMQI+Q++ GY+L  AD+LRR
Sbjct: 648  GMVDDFILRKAGKQEVDYFHPDLTACLDPTYGVIVYQEQVMQISQIIGGYTLGGADMLRR 707

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +  F  GA K G  K +A ++F+L+AKFA+YGFNKSH AAYAV+SYQ
Sbjct: 708  AMGKKKPEEMAKHRGIFCEGAEKKGYPKALAEHLFDLMAKFAEYGFNKSHTAAYAVVSYQ 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNR 834
            TAW+K HYP  F+AA+M+ E+DN ++++ F  D+    ++ +PP +N     F  V   R
Sbjct: 768  TAWLKAHYPSAFMAATMSSELDNTDQLRVFYDDSLANQLEFLPPDINESVYRFVPVDARR 827

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G     HI     +   F  L DFC R D + +NRR +E+L+ AGA D 
Sbjct: 828  IRYALGAIKGTGQAAVEHIEAVRKEGGRFTDLFDFCRRTDKRIVNRRTIEALIRAGAFDT 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R +L+ +++     A+   +N       +F     + +  + + +    + + R  
Sbjct: 888  LEPNRARLIANVELAMTMAEQEAQNAN--QGGLFDLLDTSAAPAVEMMQVRPWDEATRLT 945

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  +GF+ SGHP   +   +R++                  LA  ++  + K   +G 
Sbjct: 946  EEKTAIGFFLSGHPFHAHADTVRRLVKTPLNRIAPKKEPQW--LAGTIMGVRTKVGNRGK 1003

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + +V   +   + E +FF
Sbjct: 1004 -MAFVQLDDGTAKLEVSFF 1021


>gi|171057667|ref|YP_001790016.1| DNA polymerase III subunit alpha [Leptothrix cholodnii SP-6]
 gi|170775112|gb|ACB33251.1| DNA polymerase III, alpha subunit [Leptothrix cholodnii SP-6]
          Length = 1188

 Score =  997 bits (2579), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1061 (38%), Positives = 598/1061 (56%), Gaps = 51/1061 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL+ H+ YS+++G L ++ I+   A D QPA+AITD  NLF A++F ++A   G++P
Sbjct: 2    SFVHLRTHTEYSVVDGTLRIDEIVKTAAKDGQPALAITDLANLFGAIKFYKEANKRGVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  + ++ +                  ++LLV    GY  L E++SR ++ +  +   
Sbjct: 62   IIGADIWLEPEG-----IGAAGEVRPATRLLLLVQNEPGYLNLCEILSRAWVQNVQRNQA 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +   WL E+   GLI L+GG  G + ++     +  A +       +F  R Y+ +QR 
Sbjct: 117  WVKWEWLDEL-NGGLIALSGGLMGCVGQSLAQGDTVRAAELARKLAAIFPRRFYLEVQRA 175

Query: 190  R--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
               G+D    +  V LA   +LP+VAT+   +L+ +D++AH+  + VA    ++   RPR
Sbjct: 176  GLPGHDALVLA-TVPLAAQLQLPVVATHPIQYLAPDDFDAHEARVCVAEGETIANPKRPR 234

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                D + K ++EM ++F+D+P AL NT+EIARRCS  L +  P LP F      D    
Sbjct: 235  RFGRDQHFKTQAEMEALFADVPTALANTLEIARRCSLRLVLGKPQLPNFPTPTLADGSSM 294

Query: 307  E-ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+  R  +  GLE RLA        +      Y +RL+FEL  I +M F GYFLIV+D
Sbjct: 295  PMEDYFRQLSYEGLEERLALLYPKPEKRDAERARYLERLEFELTTILKMGFPGYFLIVSD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK N  PVGPGRGSGAGS+ AY L+ITD+DPL ++LLFERFLNP+R+SMPDFDIDF
Sbjct: 355  FIRWAKANGCPVGPGRGSGAGSLVAYVLSITDLDPLHYNLLFERFLNPERVSMPDFDIDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI YV+++YG   V+QI TFG++ AKAALRD+GR L M Y  VD + KLIP  
Sbjct: 415  CQGNRDRVIDYVKDRYGRPAVSQIATFGTMAAKAALRDIGRVLGMGYGHVDSIAKLIPAP 474

Query: 483  PAHPVSLQAIADDSRFRE-----ARLADPS----------VDRLLEISQKLEGLYRHAST 527
            P   V+L  + + +  R+     ARL  P           V  LL ++ ++EG+ R+   
Sbjct: 475  PGKSVTLARVPEKAEDRDGGVIYARLEAPELEEREKNEEEVAELLSLAMRVEGMVRNIGM 534

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HA G++I    ++   P+Y+   SD  V+Q++   +E  GL+KFDFLGL TLT+L+ + +
Sbjct: 535  HAGGVLIAPGKITDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILELAKE 594

Query: 588  FLAQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            F+  R           IP DD   Y L +   T  +FQ ES GM++ L+  +P  +ED+I
Sbjct: 595  FIVARHENRKDFAFETIPLDDAAVYKLFSDGLTEAVFQFESGGMQRMLKDAKPSRLEDLI 654

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            AL +LYRPGP+D I  +  RK+GKE +   HP+++ +L ET G+++YQEQVMQ AQ+L G
Sbjct: 655  ALNALYRPGPMDLIPSFVARKHGKEPVEYPHPMVEWVLSETYGIMVYQEQVMQTAQVLGG 714

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YSL  AD+LRRAMGKK  EEM + +  F  GA+ N IS+  A  IF+L+ KFA YGFNKS
Sbjct: 715  YSLGGADMLRRAMGKKKAEEMAEHRAIFRKGAAGNNISQDKADEIFDLMEKFAGYGFNKS 774

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAAAY++++Y TAW+K H+  EF AA+MT+E+D+ +K++   QDA +F +Q   P VN  
Sbjct: 775  HAAAYSLLAYHTAWIKVHHTAEFFAANMTIELDDTDKLRVLRQDALKFGVQFESPDVNVG 834

Query: 825  CVDFKVGDNR-----IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
               F+    +     I Y L AIKG G      I+ A     PF S+ DFC+RVD K +N
Sbjct: 835  VYRFEPAPGKAGNKLIRYGLGAIKGTGQGAIEAIIAARNEGGPFRSIFDFCARVDRKSIN 894

Query: 879  RRVLESLVFAGALDCFGYS----RMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHE 930
            +RV+E+LV AGA D         R +LL S+    +YA    +        +F      +
Sbjct: 895  KRVIEALVKAGAFDKLHPKGLDGRAELLASVGLALEYAG--TQAAHADQSGLFDFGGGDD 952

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             G+ + +         +   R  +E+  +G++ SGH  D     +R+   +  E+   + 
Sbjct: 953  HGSSTREPDYVAAETWDVKQRLSHEKIAIGYFLSGHLFDQVAAEVRQFAKRRIEDLSDSR 1012

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                  LA +V   +     +G  +      +     EA  
Sbjct: 1013 DPQ--TLAGIVTDLRIVNGHRGK-VAIFKLDDKTAAIEAVV 1050


>gi|221632747|ref|YP_002521969.1| DNA polymerase III subunit alpha [Thermomicrobium roseum DSM 5159]
 gi|221155959|gb|ACM05086.1| DNA polymerase III alpha subunit [Thermomicrobium roseum DSM 5159]
          Length = 1166

 Score =  997 bits (2578), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1048 (36%), Positives = 576/1048 (54%), Gaps = 47/1048 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             + HL +H+ +SLL+G   +   + +        +AI+D   L+  +++ +   A G+ P
Sbjct: 4    PYAHLHLHTEFSLLDGLGRIPEYVGRARELGMEHLAISDHGVLYGIIDWYKAVRAEGLHP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +  +              T+  ++LL     GY+ L++L +R  L        
Sbjct: 64   IIGMEAYLAPRSVQDRDK-------TIYHLLLLAENERGYKNLLKLATRASLEG-FYYKP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI ++ L E   EGLI  +    GPI       + + A +  +  ++LF  DR Y+ LQ 
Sbjct: 116  RIDMAMLAE-HAEGLIATSACLGGPIANNLLNGNHEAAREWGIRLRELFGPDRFYIELQD 174

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ R  S++V LA   +LPLV TN+  +L +ED    D+L+ +  ++ +    R R
Sbjct: 175  HGLPEQRRVNSELVALARELDLPLVVTNDVHYLRQEDASVQDLLICIQTNSTLDDPKRMR 234

Query: 248  VTPDH-YLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            V  D  Y K+  EM  +F +++PEAL NTV IA RC   L+     LP            
Sbjct: 235  VQSDQLYFKSAEEMWRLFGAEVPEALLNTVRIAERCEVELEFGRLHLP----DPGIPAGM 290

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              ++ L      G+  R  +         ++ R+RL++EL+VI +  FS Y LIV DF +
Sbjct: 291  TADDYLAALCWEGIRQRYPE-------LTEEVRRRLEYELDVIRQTGFSSYMLIVRDFAE 343

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A++  I  G  RGS A S+  YAL ITD+DPL   L+FERFLNP+R  MPD D+DF  D
Sbjct: 344  FARQRGILYG-VRGSAAASIVLYALGITDVDPLANRLVFERFLNPERREMPDIDMDFADD 402

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV  KYG E VAQIITFG++ AKAA+RDVGRA+  P+++VDR+ +LIP+    
Sbjct: 403  RRHEVIEYVARKYGAEHVAQIITFGTMGAKAAIRDVGRAMGWPHAEVDRIARLIPSGVNM 462

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+ +    R     DP    L++ ++KLEG+ RHA THAAG+VI   PL + VP+
Sbjct: 463  TLE-RALEESPELRHLYETDPRSRELIDNARKLEGIARHAGTHAAGVVISASPLVEHVPL 521

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
             R  R++   LP TQF M+ + + GL+K DFLGL  LT+L  +++ + + RG  +DL  I
Sbjct: 522  QRPARAEEGALPTTQFPMETVAEIGLLKMDFLGLANLTILANAVELIRETRGETIDLKQI 581

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD +T+ LL    T G+FQLES+GMR+ +  ++P  + ++ A+++LYRPGP+ +I  Y
Sbjct: 582  PMDDRKTFELLAEGQTFGVFQLESAGMRRYIRELRPTSVAELAAMIALYRPGPMQHIPRY 641

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K+G E I   HP +  +L ET GVI+YQ+QV+ IA+  +GY+L EAD++R+AMGKKI
Sbjct: 642  CRAKHGLEPIQYPHPDLAEILDETYGVIVYQDQVLLIARKFAGYTLGEADIMRKAMGKKI 701

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E+M  ++ERFI+GA   G S+  A  IF L+  FA Y FNK+HA  YAV+SYQTA++K 
Sbjct: 702  PEKMRAERERFIAGAIAKGYSEEDAERIFNLIEPFAGYAFNKAHATCYAVVSYQTAYLKA 761

Query: 782  HYPVEFLAASMTLEMDN----VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GD 832
            +YPVE++ A +     +    V++I     + ++  I ++PP +N     F V     G 
Sbjct: 762  NYPVEYMTAILRNAPSHPSGTVKRIAAALAECQKLGISVLPPDINHSEATFTVEQLPDGS 821

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              I + LA +K VG      I+ A  ++P   F S E FC  +D   +NRR +ESL+  G
Sbjct: 822  RAIRFGLAMVKHVGEAAVEAILAARNEQPGKVFRSFEHFCETIDWSVVNRRAVESLIKCG 881

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            ALDCFG  R  LL  LD   + AQ  +K       ++F+      +  +   +  +E   
Sbjct: 882  ALDCFG-DRKILLAQLDQAIQAAQARQKALRRGQMDLFSAVGHDQAAPLRFSRPDIEPPD 940

Query: 950  V----RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
            +        E+ +LG Y S HPLD +  + R  G+    E      G  + L A++   +
Sbjct: 941  IPTRTLLGWERELLGVYLSAHPLDEFVLLGRLRGLVQIAELDDESVGQTVELLALISGVR 1000

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  TR G  +  +   + +   EA  FP
Sbjct: 1001 KLTTRTGRVMAVLQLEDRSGTIEAVVFP 1028


>gi|221067306|ref|ZP_03543411.1| DNA polymerase III, alpha subunit [Comamonas testosteroni KF-1]
 gi|220712329|gb|EED67697.1| DNA polymerase III, alpha subunit [Comamonas testosteroni KF-1]
          Length = 1177

 Score =  997 bits (2578), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/1058 (37%), Positives = 591/1058 (55%), Gaps = 58/1058 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   +N ++   A D Q A+AITD NNLF  ++F ++    G++P+
Sbjct: 2    FVHLRLHTEFSVVDGTTRVNAMIKAAAEDGQVAMAITDFNNLFGGIKFYREGRGKGVKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++                    +++LV + +GY  + EL++R +  +  +   +
Sbjct: 62   LGAEIVLE-----------GLGDAPPSRVIVLVQSRQGYHNIAELLARGWTRNVVRDQAQ 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
                WLQE+G EGLI+L+G  +GP+  A      + A +       +F  R Y+ LQR  
Sbjct: 111  HKWEWLQELG-EGLIVLSGAQAGPVGIALTRGDEKGAAEIAQRLATMFPHRFYIELQRAG 169

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D       V+LA    LP+VAT+   +   +DYEAH+  + +A   ++    R  + 
Sbjct: 170  RPDDESHVLAAVKLASRLNLPVVATHPIQYAKPDDYEAHEARVCIAEGEILGNAKRVRKF 229

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T D Y K  +EM  +F D+P A+ENTVEIARRCS  L++  P LP F       +    +
Sbjct: 230  TRDQYFKTAAEMEQLFCDIPSAIENTVEIARRCSLTLELGNPQLPNFPVPAGMSM----D 285

Query: 309  NELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R+++  GLE RL      A  +      Y +RL+FEL  I +M F GYFLIV+DFI+
Sbjct: 286  EFFRHESYQGLEERLVHLYPDAAKRDAQRARYVERLEFELGTIMKMGFPGYFLIVSDFIK 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AY L +TD+DPL ++LLFERFLNP+R+SMPDFD+DFCQ 
Sbjct: 346  WAKANGCPVGPGRGSGAGSLVAYVLKVTDLDPLEYNLLFERFLNPERVSMPDFDVDFCQQ 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV+++YG + V+QI TFG++ A+AA+RDVGR L M Y+  D + KLIPN P  
Sbjct: 406  NRDRVIDYVKDRYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGL 465

Query: 486  PVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             V+L+              AI ++    E    +  V  L+E++Q LEG+ R+   HA G
Sbjct: 466  HVTLKYPPNPPKEGDKYTYAIKEEPILAERIEREEDVKTLIEMAQSLEGMTRNIGMHAGG 525

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI    L+   P+Y+   S   V  ++   +E  GL+KFDFLGL TLT+L+ + +F+ +
Sbjct: 526  VVIAPGRLADFCPLYQQPGSTSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIMK 585

Query: 592  RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R           IP DD+ TY L +   T  +FQ ES GM+Q L+  +P  +ED+IAL +
Sbjct: 586  RHKGQENFQFENIPLDDYPTYKLFSDGKTEAVFQFESRGMQQMLKEAKPSRLEDLIALNA 645

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK+G+E +   HPL++ +L ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 646  LYRPGPMDLIPTFIARKHGQEVVEYPHPLVESVLAETYGIMVYQEQVMQTAQVLGGYSLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM K +  F  GA+KNG+S+  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 706  GADLLRRAMGKKKVEEMVKHRGIFREGAAKNGLSEEKADEVFDLMEKFAGYGFNKSHAAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y++++Y T W+K HY  EF   +MT+EMDN +K+K   +DA +  I    P VN     F
Sbjct: 766  YSLLAYHTGWLKVHYTAEFYCGNMTVEMDNTDKLKVLYEDALKMGITFEMPDVNRGVHRF 825

Query: 829  KVGDNR-IYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKKL 877
            +   ++ I Y L AIKG G      I+ A              PF SL DFC RVD  ++
Sbjct: 826  EPVTDKVIRYGLGAIKGTGQAAIEAIVAARNGEGTGPNGHETGPFKSLFDFCLRVDRSRI 885

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGT 933
            N+R +E+L+  GA D    +R  L+ +LD    +A     N       +F        G+
Sbjct: 886  NKRTVEALIKGGAFDSIDMNRASLMATLDTAFGFAATSIANAD--QGGLFDMMGDDALGS 943

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
             + +  +          +   E+  +GFY +GH  D  +  +R+       E   +    
Sbjct: 944  STAEPPMADVLPWGVKEKLTLEKTAIGFYLTGHLFDEVEAEVRRFVRTPIGEMRDSREPQ 1003

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
               +A ++   +    ++G      T  + +   EA+ 
Sbjct: 1004 --TMAGIIGGLRTINGQRGKL-SIFTLDDKSAVIEASV 1038


>gi|255319195|ref|ZP_05360412.1| DNA polymerase III subunit alpha [Acinetobacter radioresistens SK82]
 gi|262379698|ref|ZP_06072854.1| DNA polymerase subunit III [Acinetobacter radioresistens SH164]
 gi|255303588|gb|EET82788.1| DNA polymerase III subunit alpha [Acinetobacter radioresistens SK82]
 gi|262299155|gb|EEY87068.1| DNA polymerase subunit III [Acinetobacter radioresistens SH164]
          Length = 1188

 Score =  997 bits (2578), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1039 (37%), Positives = 586/1039 (56%), Gaps = 47/1039 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++     D+ PA+A+TD +NL +A++F  K    GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRVPDLVKAAQKDEMPALALTDLSNLHAAVKFYGKCLGKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++                       + LL  T  G++ L ELVS  Y+  Q      
Sbjct: 63   LGSEI---------------RLNDAEHRMTLLAMTNTGWRNLTELVSEGYIRGQQLDIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            +   W+ +   + LI L G  +  + +    ++ Q AE  L  +   FG+R+Y+ L R +
Sbjct: 108  VQKEWILDQ-NQDLIALLG-MNSDVGKMLITSNPQKAEPLLEEWIAKFGNRVYLALTRTN 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     + V+LA  + + +VA N+  F++ +D+EAH+  + +A   V+    RP+  
Sbjct: 166  RPGEDDFIIEAVKLAQKYNIGVVAHNDVHFMTRDDFEAHEARVCIADGYVLGDNRRPKTY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ Y K+  EM  +FSD+P A+ENT  IA+RC+  LQ+    LP +   E        +
Sbjct: 226  SPEQYFKSSEEMTELFSDIPSAIENTYHIAKRCNVTLQLGKYFLPDYPIPEG----YTID 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKG------YHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE RL      +          + Y +R+++E+N+I  M F GYFLIV D
Sbjct: 282  TFFAHLSKEGLEERLNFLYPPEERDEYWPEIRKPYDERIEYEINIINSMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWSKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYELLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG + V+QI TFG++ AK A+RDV R L   Y   DR+ KLIP  
Sbjct: 402  CIAGRDRVIDYVARTYGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKLIPTK 461

Query: 483  PAHPVSLQAIADDSRFREARL--ADPSVD---RLLEISQKLEGLYRHASTHAAGIVIGDR 537
            P      +++  + + ++     ++P  D    + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGLSLEESLQAEPQLKDIVTNPSNPDYDDASEIWEMALKLEGITRNTGKHAGGVVISPT 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
             ++    +  D      V QF+   +E AGL+KFDFLGL+ LT+++ ++  + +R     
Sbjct: 522  KITDFSAVMCDADGTARVAQFDKDDVEAAGLVKFDFLGLRNLTVIEDAVKNINKRIKSDK 581

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP +D + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLDIAAIPLEDKDAYLVFANANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  + +R +G E    +HPL++ +L+ T G+++YQEQVMQ AQ  +GY+L  AD+LR
Sbjct: 642  MDLIPDFIHRMHGGE-FEYLHPLLEGVLEPTYGIMVYQEQVMQAAQYCAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ FI GA+K  I +  A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRKIFIEGAAKKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDN 833
            QTAW+K HYP EFLAA M+ EM N + +     D R+ N++++PPSVN     F  + + 
Sbjct: 761  QTAWLKAHYPAEFLAAVMSSEMQNTDNVVFLIDDCRKNNLEVLPPSVNMSIYQFHAIDEK 820

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L AIKGVG    + ++++     P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEAAMQSVIDSRNQQGPYKDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A    +NR     ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERADLMAQLPEAVQAADQARQNRETGIMDLFGEVE--EIQRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP++VY+P L+        E   T RG     A +V+       R  
Sbjct: 939  KGEKDTLGLYLTGHPINVYRPELKSFVPSRLNELTPTRRGVTTVFAGLVIDVANFPNR-- 996

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
                 +T  +     E + 
Sbjct: 997  ---VMITLDDGTARVEVSC 1012


>gi|294790529|ref|ZP_06755687.1| DNA polymerase III, alpha subunit [Scardovia inopinata F0304]
 gi|294458426|gb|EFG26779.1| DNA polymerase III, alpha subunit [Scardovia inopinata F0304]
          Length = 1187

 Score =  997 bits (2577), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/1076 (31%), Positives = 551/1076 (51%), Gaps = 60/1076 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  FVHL  H+ YS L+GA+ +  ++  +    Q A+ ITD  N+  A E  + A  
Sbjct: 1    MTSSSDFVHLHNHTDYSTLDGAVPVKKLVQVVKDQGQKAVGITDHGNMHGAYELWRTAVD 60

Query: 65   AGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
             GI+PIIG +  I                 +      +   +   + L     +G   L+
Sbjct: 61   QGIKPIIGIEAYITPGTARGDKTRVHWGTKEQHADDVSANGSYTHMTLWAQNDQGLVNLL 120

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +  S   L     ++ R+    L     +G+I  TG  SG +         + A +    
Sbjct: 121  KASSVANLEGLMGRNPRMDRDVLNTYH-QGIIATTGCPSGAVQTRLRLGQYEQALREARE 179

Query: 174  FKKLF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             + ++  +  YV +  H    ++   + ++++A     PLVATN+S +  EED +A D L
Sbjct: 180  LQDIYGKENFYVEIMDHGLTIEKRVINDLIRIADNIGAPLVATNDSHYGLEEDAKAQDAL 239

Query: 232  MAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +   + ++  +R       +Y+K+  +M  +F D P+A +NT+EIA RC+ +   H  
Sbjct: 240  LCINSGSRLTDPNRFHFDGSGYYIKSAQQMRELFKDFPQACDNTLEIAERCNVMFDDHED 299

Query: 291  --ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +P F   +  D      +   +    GLE R   G  A+        ++ D+E  VI
Sbjct: 300  GAFMPEFDCPQGWDAT----SLFLHDVEQGLERRYPDGVPAQ------VARQADYECGVI 349

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M+F GYFL+VAD+I WAK + + VGPGRGS AGS+ +YA+ IT++DPL+  L+FERFL
Sbjct: 350  CQMQFCGYFLVVADYINWAKTHGVMVGPGRGSAAGSMVSYAMGITELDPLKHGLIFERFL 409

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+S+PD D+DF    R++V++YV +KYG ++VAQ +T+G+++ K AL+D  R L   
Sbjct: 410  NPERVSLPDIDVDFDPAGREKVLQYVTHKYGADKVAQCVTYGTIKTKQALKDSARILDYE 469

Query: 469  YSQVDRLCKLIPND-PAHPVSL--------QAIADDSRFREARLADPSVDRLLEISQKLE 519
            +   + + K +P       +SL        +  A+   FR+    +P V ++ E ++ +E
Sbjct: 470  FQMGETITKALPGSVGGKDISLHDIFDPHAKRYAEAQEFRDLYNDNPDVQKITEEAKGIE 529

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HA   ++  +P++   P+ +        T F     E  GL+K DFLGL  L
Sbjct: 530  GLIRQTGVHACATIMASQPIANTSPLLKRT-DGTITTTFEYHTCETLGLVKMDFLGLANL 588

Query: 580  TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T+++++L+ +       VDL  IP DD  TY LL++  TLG+FQL+S GM+  L+ ++PD
Sbjct: 589  TVIKETLNNIKANGKPAVDLEKIPIDDKPTYDLLSSGHTLGVFQLDSDGMQSLLKQLKPD 648

Query: 639  CIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQ 692
               DI AL++LYRPGP+D  +   Y  RKNG ++I  IHP ++     +L ET G+I+YQ
Sbjct: 649  NFNDISALIALYRPGPMDVDSHNNYAKRKNGLQEIKPIHPELEKPLASVLDETYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV   A++L+GYSL  ADVLRRAMGKK  E + K+K  F  G  ++G S+  A  ++++
Sbjct: 709  EQVQSAARILAGYSLGRADVLRRAMGKKKPEVLAKEKVPFFEGMKEHGYSQEAAQAVWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +  E  N +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGERTNKDKTALYLGECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA----DKPFDSLEDF 868
            NIQ++PP VN     +    N I + L A++ VG      I+           F S  D+
Sbjct: 829  NIQVLPPDVNESVSHYSAVGNDIRFGLGAVRNVGDKIVDAIVHEREKSGGKGKFLSFLDW 888

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             +R+    LN+R +ESL+  GA D    +R  L    +        +++       ++FA
Sbjct: 889  INRMPVSVLNKRTVESLIKGGAFDSIDPNRRALFTIHEAAIDQVVPLKRKEAEGQFDLFA 948

Query: 929  HEKGTFS--------DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                  S          I++ +    +   +   E+ +LG Y S HPL     +L  +  
Sbjct: 949  DAGDPSSSSADALGDANISVPQIDEWDKKTKLNFEREMLGLYVSDHPLSGLASVLANLSD 1008

Query: 981  KGYEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                + +         N + +AA++ +  ++ +++G     VT  +     +  FF
Sbjct: 1009 MSIPQLLNKASTMPDRNQVTIAALITAVDRRVSKQGKPWAIVTLEDLEGSIQCLFF 1064


>gi|304389308|ref|ZP_07371273.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii
            subsp. curtisii ATCC 35241]
 gi|304327426|gb|EFL94659.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii
            subsp. curtisii ATCC 35241]
          Length = 1225

 Score =  997 bits (2577), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1073 (33%), Positives = 563/1073 (52%), Gaps = 60/1073 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VH+ YS+L+GA  +  ++ K   +QQ A+AITD   LF A EF Q+   AGI
Sbjct: 3    SSEFVHLHVHTDYSILDGAAKIKRLVAKAVENQQKAVAITDHGYLFGAFEFYQECRNAGI 62

Query: 68   QPIIGCQLDIDMQ-DNLKMTN------------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            +PIIG +  +         T                +       + LL  T EG   L  
Sbjct: 63   KPIIGLEAYVTPGTSRFDTTRVQWGTLEQQKAGDDVSARGAYTHMTLLSHTTEGMHNLFR 122

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S   L  Q  +  R     L+    EGLI   G  SG +         Q A +     
Sbjct: 123  LGSYASLDGQMGKWPRADRELLERYH-EGLIGTAGCPSGEVQTRLRLGQYQEAVRAAGEL 181

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  D  YV L  H    +      +++LA     P++ATN+S ++ +ED E  D ++
Sbjct: 182  QDIFGKDYFYVELMDHGLSIENRVRKDLLRLAREINAPIIATNDSHYVYKEDREIQDAML 241

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP- 290
             +     +S  DR R    D+YL+   EM  +F+++PEAL+NT+ IA +C+         
Sbjct: 242  CINSGDRLSNPDRFRFDGTDYYLRPSEEMHELFAEIPEALDNTLLIAEQCNVEFPDVKEG 301

Query: 291  -ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +P F     +D    E +    +   GL+ R   G       +++ R+R D+E+ +I 
Sbjct: 302  TFMPVFPVPAGED----EVSWFIKEVERGLQYRFPNGI------SEEVRKRADYEVEIIV 351

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F  YFLIV+D+IQWAK N I VGPGRGSGAGS+ AYA+ ITD+DP++  LLFERFLN
Sbjct: 352  QMGFPSYFLIVSDYIQWAKDNGIRVGPGRGSGAGSMVAYAMRITDLDPIKHGLLFERFLN 411

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPD D+DF   RR +VI YV  KYG ++V+Q++T+G++++K AL+D  R     +
Sbjct: 412  PERVSMPDIDVDFDDRRRQDVIDYVTRKYGKDKVSQVVTYGTIKSKQALKDAARISGADF 471

Query: 470  SQVDRLCKLIPND-PAHPVSLQAI--------ADDSRFREARLADPSVDRLLEISQKLEG 520
            S+ ++L K +P       + L  +         +   FR+    DP   ++ +++  +EG
Sbjct: 472  SKGEKLTKAMPPAVMGKDIPLSGMYNPQHPRYKEAEEFRKVVAEDPFNRQIFDLAAGVEG 531

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            + R    HA  +++    L+ ++PM +  +    +TQF+    E  GL+K DFLGLK LT
Sbjct: 532  MVRQWGVHACAVIMSRETLTDVIPMMKRPQDGAMITQFDYPTCEHLGLLKMDFLGLKNLT 591

Query: 581  LLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  +LD +        DL  +  DD  TY LL+T  TLG+FQL+  GMR  L+ ++P  
Sbjct: 592  IISDALDNIKINGKTPPDLERLDVDDKATYELLSTGETLGVFQLDGGGMRTLLKQLRPTE 651

Query: 640  IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQE 693
             +DI ALV+LYRPGP+  ++   Y  RKNG +KI  IH  ++     +L  T G+IIYQE
Sbjct: 652  FDDISALVALYRPGPMGANSHTNYAFRKNGLQKIEPIHSELEEPLKDILGYTYGLIIYQE 711

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G  ++G S+     ++ +L
Sbjct: 712  QVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMIEHGYSEDCCETLWGIL 771

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T +  + +K+  +  + R+  
Sbjct: 772  VPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQT-DKDKLGMYLNEVRRMG 830

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV 872
            I+++PP VN     F    N I + LA+I+ VG      I++A  +   + S  DF  +V
Sbjct: 831  IKVLPPDVNQSYGVFAPDGNDIRFGLASIRNVGENVVAEIIKARQEKGAYTSFSDFLKKV 890

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HE 930
             ++  N+R + SL+ AGA D FG  R  L    +   +     ++  +N   ++FA    
Sbjct: 891  PAEVCNKRTIGSLIKAGAFDAFGAPRSALTAIHEQAVEAVVSTKRQESNGQFDLFAALEM 950

Query: 931  KGTFSDK-------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +GT S         I +   S    +     E+ +LG Y S HPL     +L  +     
Sbjct: 951  EGTESPDNLLGSASIDIPDISEWPKNELLAFEREMLGMYVSDHPLSGMNRVLEGLAEDRI 1010

Query: 984  EESVATI---RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
             +  +       + +++A +V +   K +++ G +       +     E  FF
Sbjct: 1011 VDLTSDEGKGNDSPVKIAGLVTAVNVKISKRSGQQWAIAKIEDMTGSVEVLFF 1063


>gi|262369729|ref|ZP_06063057.1| DNA polymerase subunit III [Acinetobacter johnsonii SH046]
 gi|262315797|gb|EEY96836.1| DNA polymerase subunit III [Acinetobacter johnsonii SH046]
          Length = 1189

 Score =  997 bits (2577), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1037 (37%), Positives = 579/1037 (55%), Gaps = 47/1037 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++    A+  PA+AITD +NL +A++F  K    GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRIPDLVKAAKAEGMPALAITDLSNLHAAVKFYGKCLDNGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++                       + LL  +  G++ L ELVS  ++  Q      
Sbjct: 63   MGSEV---------------RLNDAEHRVTLLAMSNVGWRNLTELVSEGFIRGQQLDIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E     LI L G  S  + +    ++ Q AE  L  +   FG+R+Y+ L R  
Sbjct: 108  VAKDWILEQ-NHDLIALLGMRS-DVGKMLCTSNPQKAEPLLEEWIAKFGNRVYLALCRTE 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
            R  +     + ++LA  + + +VA N+  F+ E D+EAH+  + +A   V+    RP   
Sbjct: 166  RSGEDDFNYEALKLAKKYNIGVVAHNDVHFMKEIDFEAHEARVCIADGYVLGDNRRPKDY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ Y K+  +M  +F+D+P A+ENT +IA+RC+  LQ+    LP +   E   I    +
Sbjct: 226  SPEQYFKSGQQMAELFADIPSAIENTYQIAKRCNVTLQLGKYFLPDYPIPEGHTI----D 281

Query: 309  NELRNKAVAGLEVRLAQGAIAK------GYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE RL      +          ++Y  RL++E+  I +M F GYFLIV D
Sbjct: 282  TYFAHLSKEGLEERLDFLYPPETRDEYWPEKRKEYDDRLEYEIGTILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWSKGNGVPVGPGRGSGAGSLVAYSLKITDLDPLPYGLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG + V+QI TFG++ AK A+RDV R L   Y   DR+ K+IP  
Sbjct: 402  CIAGRDRVIDYVARTYGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMIPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            P      ++I  + + ++         +     + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGLSLEESIEAEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVISPT 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GV 594
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +R    V
Sbjct: 522  KITDFSAVLCDADGTGRVAQYDKDDVESAGLVKFDFLGLRNLTVIEDAVKNINKRIQLDV 581

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLDIAFIPLDDKDAYLIFANANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  + +R +G E    +HPL++ +L+ T G+++YQEQVMQ AQ  +GYSL  AD+LR
Sbjct: 642  MDLIPDFIHRMHGGE-FEYLHPLLEGVLEPTYGIMVYQEQVMQAAQYCAGYSLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ F  GA+K  I +  A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFTEGAAKKDIDQATANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTAW+K HYP EFLAA M+ EM N + +     D R  +I+++PPSVN     F   D++
Sbjct: 761  QTAWLKAHYPAEFLAAVMSSEMQNTDNVVFLIDDCRHNDIEVLPPSVNMSIYQFHASDDK 820

Query: 835  IY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               Y L AIKGVG    + ++++   D P+  L DFC R+D KK+N+R LE+L+ +GALD
Sbjct: 821  TIVYGLGAIKGVGEAAMQSVIDSRIQDGPYRDLFDFCHRIDLKKINKRTLEALIRSGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A     NR     ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERSSLMAQLPEAVQAADQARSNRETGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+  L+        E   T RG     A +VV          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRTELKAFIPNKINELTPTRRGVTTVFAGLVVDVANFP---- 994

Query: 1013 SRIGWVTFSEPAKEYEA 1029
            +R+  VT  +     E 
Sbjct: 995  NRMM-VTLDDGTSRIEV 1010


>gi|329940921|ref|ZP_08290201.1| DNA polymerase III subunit alpha [Streptomyces griseoaurantiacus
            M045]
 gi|329300215|gb|EGG44113.1| DNA polymerase III subunit alpha [Streptomyces griseoaurantiacus
            M045]
          Length = 1179

 Score =  997 bits (2577), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/1070 (32%), Positives = 552/1070 (51%), Gaps = 53/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F HL VH+ YS+L+GA  L ++ D         IA++D  NL  A +F   A  
Sbjct: 1    MSNKP-FTHLHVHTQYSMLDGAARLKDMFDACNEMGMTHIAMSDHGNLHGAYDFFHSAKK 59

Query: 65   AGIQPIIGCQLDIDMQDN--LKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +     +    G+        +         +  + A G   L  
Sbjct: 60   AGVTPIIGIEAYVAPESRRNKRKIRWGQPHQKRDDVSGSGGYTHKTIWAADAGGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGELQTRLRLGQFDEALKSAADY 178

Query: 175  KKLF-GDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  DR ++ L  H     +R  + ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIDIEHRVREGLLEIGKKLGIPPLVTNDSHYTYAHEASAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHA 289
             +     +S  DR +     +YLK+  EM +I S     E   NT+ +A +         
Sbjct: 239  CIQTGKNLSDPDRFKFDGTGYYLKSADEMYAIDSSDAWQEGCRNTLLVAEQIDTTGMFEK 298

Query: 290  -PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P+F   E       E    + +   G+E R   G        +D ++++++E++VI
Sbjct: 299  RDLMPKFDIPEG----YTEVTWFKEEVRRGMERRFPGGI------PEDRQKQVEYEMDVI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFL
Sbjct: 349  IQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  P
Sbjct: 409  NPERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y+  DR+ K +P D     + L  I D +          R     +P V ++++ ++ +E
Sbjct: 469  YAMGDRITKAMPADVLGKGIDLNGITDPTHPRYSEAGEVRGMYENEPDVKKVIDTAKGVE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++    +++ VP++      + +TQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSETITEHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   +G  +DL  +P DD  T+ LL    TLG+FQ +   MR  L  M+PD
Sbjct: 589  TIMDDAVKMVKSNKGRDIDLLSLPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMKPD 648

Query: 639  CIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLID----PMLKETQGVIIYQ 692
              EDI A+ +LYRPGP  +D+   Y  RKNG ++I  IHP ++     +L  T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHPELEAPLKEVLDVTYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  +E+ K    F +GA KNG S      ++++
Sbjct: 709  EQVQKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFTIFQAGAKKNGYSDEAIQALWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H+AAY ++SY TA++K +YP E++AA +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSAAYGLVSYWTAFLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             I+++PP+VN    +F   GD+ I + L+A++ VGT     I+ +  A   + S  D+  
Sbjct: 829  GIKVLPPNVNESESNFAAQGDDVILFGLSAVRNVGTNVVDSIIRSRKAKGKYASFPDYLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +V++   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F   
Sbjct: 889  KVEAVVCNKRTTESLIKAGAFDSMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGM 948

Query: 931  KGTFSDKITLEK-----FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                + +              + +     E+ +LG Y S HPL   + +L      G  +
Sbjct: 949  GEGDTSEPGFGLDVEFSPDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQ 1008

Query: 986  SVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1009 LTGGDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFP 1058


>gi|291485359|dbj|BAI86434.1| DNA polymerase III DnaE [Bacillus subtilis subsp. natto BEST195]
          Length = 1115

 Score =  997 bits (2577), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1026 (37%), Positives = 591/1026 (57%), Gaps = 37/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQVHS YSLL  A ++  ++ +       ++A+TD + ++ A++F +   A GI P
Sbjct: 2    SFVHLQVHSGYSLLNSAAAVEELVSEADRLGYASLALTDDHVMYGAIQFYKACKARGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    +   D                 +VLL  +  GYQ L+++ S +    +G    
Sbjct: 62   IIGLTASVFTDD----------SELEAYPLVLLAKSNTGYQNLLKISSVLQSKSKGGLKP 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
                 WL     EG+I +T G  G I+        + A +  L F+ +F     Y + Q 
Sbjct: 112  ----KWLHSY-REGIIAITPGEKGYIETLLEGGLFEQAAQASLEFQSIFGKGAFYFSYQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +G ++    Q+++L+    +P+ AT +  ++ +ED  A+  L A+     ++      +
Sbjct: 167  FKG-NQVLSEQILKLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLTDAPAEDL 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             PD  LK   EM +I+ + PEAL+ +VEIA +C   + +    LP F   +        +
Sbjct: 226  -PDLDLKPLEEMQNIYREHPEALQASVEIAEQCRVDVSLGQTRLPSFPTPDG----TSAD 280

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L +  + GL  R        G   + Y +RL +EL+VI RMKFS YFLIV DF++ A 
Sbjct: 281  DYLTDICMEGLRSRF-------GKPDERYLRRLQYELDVIKRMKFSDYFLIVWDFMKHAH 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ AY L ITD+DP++  LLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 334  EKGIVTGPGRGSAAGSLVAYVLYITDVDPIKHHLLFERFLNPERVSMPDIDIDFPDTRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YVQ KYG   VAQIITFG+L AKAALRDVGR   +   + D+L KLIP+ P   + 
Sbjct: 394  EVIQYVQQKYGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPSRPGMTLD 453

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A     +  +       + ++  I++K+EGL RHASTHAAG+V+ + PL+ +VP+  +
Sbjct: 454  -EARQQSPQLDKRLRESSLLQQVYSIARKIEGLPRHASTHAAGVVLSEEPLTDVVPLQ-E 511

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHE 607
                + +TQ+ M  +E  GL+K DFLGL+ LTL++     +  +  +K+DLS I + D +
Sbjct: 512  GHEGIYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEKEENIKIDLSSISYSDDK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL+   T GIFQLES+GMR  L+ ++P  +EDI+A+ +LYRPGP++NI ++ +RK+G
Sbjct: 572  TFSLLSKGDTTGIFQLESAGMRSVLKRLKPSGLEDIVAVNALYRPGPMENIPLFIDRKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +  +   H  +  +L++T GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ KK KE +D+
Sbjct: 632  RAPVHYPHEDLRSILEDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKKKEILDR 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I  Q A++K HYP+ F
Sbjct: 692  ERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHYPLYF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N +KI ++  +A+   I+I+PPSVN     F V +  + YSL AIK VG 
Sbjct: 752  MCGLLTSVIGNEDKISQYLYEAKGSGIRILPPSVNKSSFPFTVENGSVRYSLRAIKSVGV 811

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +  + I +A  +KPF+ L DFC RV SK +NR++LE+L+F+GA+D FG +R  LL S+D 
Sbjct: 812  SAVKDIYKARKEKPFEDLFDFCFRVPSKSVNRKMLEALIFSGAMDEFGQNRATLLASIDV 871

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++A+    +  +    +F  E  +FS K    +            E+  LG YFS HP
Sbjct: 872  ALEHAELFAAD--DDQMGLFLDE--SFSIKPKYVETEELPLVDLLAFEKETLGIYFSNHP 927

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L  ++  L   G     ++   ++   + L  ++   +  +T+ G  + ++T S+   E 
Sbjct: 928  LSAFRKQLTAQGAVSILQAQRAVK-RQLSLGVLLSKIKTIRTKTGQNMAFLTLSDETGEM 986

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 987  EAVVFP 992


>gi|15608685|ref|NP_216063.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis H37Rv]
 gi|15841014|ref|NP_336051.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis CDC1551]
 gi|31792733|ref|NP_855226.1| DNA polymerase III subunit alpha [Mycobacterium bovis AF2122/97]
 gi|121637469|ref|YP_977692.1| DNA polymerase III subunit alpha [Mycobacterium bovis BCG str.
            Pasteur 1173P2]
 gi|148661343|ref|YP_001282866.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis H37Ra]
 gi|148822771|ref|YP_001287525.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis F11]
 gi|167968102|ref|ZP_02550379.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis H37Ra]
 gi|215411208|ref|ZP_03420016.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis
            94_M4241A]
 gi|215426890|ref|ZP_03424809.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis T92]
 gi|215430440|ref|ZP_03428359.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis EAS054]
 gi|215445744|ref|ZP_03432496.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis T85]
 gi|218753267|ref|ZP_03532063.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis GM 1503]
 gi|219557457|ref|ZP_03536533.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis T17]
 gi|224989943|ref|YP_002644630.1| DNA polymerase III subunit alpha [Mycobacterium bovis BCG str. Tokyo
            172]
 gi|253799398|ref|YP_003032399.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            KZN 1435]
 gi|254231775|ref|ZP_04925102.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis C]
 gi|254364418|ref|ZP_04980464.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis str. Haarlem]
 gi|254550566|ref|ZP_05141013.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis '98-R604
            INH-RIF-EM']
 gi|260186497|ref|ZP_05763971.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis CPHL_A]
 gi|260200607|ref|ZP_05768098.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis T46]
 gi|260204831|ref|ZP_05772322.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis K85]
 gi|289443001|ref|ZP_06432745.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            T46]
 gi|289447158|ref|ZP_06436902.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            CPHL_A]
 gi|289554661|ref|ZP_06443871.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            KZN 605]
 gi|289569583|ref|ZP_06449810.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            T17]
 gi|289574231|ref|ZP_06454458.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            K85]
 gi|289750114|ref|ZP_06509492.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            T92]
 gi|289753634|ref|ZP_06513012.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis EAS054]
 gi|289757663|ref|ZP_06517041.1| DNA polymerase III subunit alpha DnaE1 [Mycobacterium tuberculosis
            T85]
 gi|289761710|ref|ZP_06521088.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis GM 1503]
 gi|294996513|ref|ZP_06802204.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 210]
 gi|297634115|ref|ZP_06951895.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis KZN
            4207]
 gi|297731102|ref|ZP_06960220.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis KZN
            R506]
 gi|298525059|ref|ZP_07012468.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis
            94_M4241A]
 gi|306775736|ref|ZP_07414073.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu001]
 gi|306779560|ref|ZP_07417897.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu002]
 gi|306784291|ref|ZP_07422613.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu003]
 gi|306788659|ref|ZP_07426981.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu004]
 gi|306792998|ref|ZP_07431300.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu005]
 gi|306797377|ref|ZP_07435679.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu006]
 gi|306803258|ref|ZP_07439926.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu008]
 gi|306807837|ref|ZP_07444505.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu007]
 gi|306967657|ref|ZP_07480318.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu009]
 gi|307079560|ref|ZP_07488730.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu011]
 gi|307084125|ref|ZP_07493238.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu012]
 gi|313658434|ref|ZP_07815314.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis KZN
            V2475]
 gi|54036990|sp|P63978|DPO3A_MYCBO RecName: Full=DNA polymerase III subunit alpha
 gi|54040951|sp|P63977|DPO3A_MYCTU RecName: Full=DNA polymerase III subunit alpha
 gi|1403495|emb|CAA98315.1| PROBABLE DNA POLYMERASE III (ALPHA CHAIN) DNAE1 (DNA
            NUCLEOTIDYLTRANSFERASE) [Mycobacterium tuberculosis
            H37Rv]
 gi|13881224|gb|AAK45865.1| DNA polymerase III, alpha subunit [Mycobacterium tuberculosis
            CDC1551]
 gi|31618323|emb|CAD96241.1| Probable DNA polymerase III (alpha chain) dnaE1 [Mycobacterium bovis
            AF2122/97]
 gi|121493116|emb|CAL71587.1| Probable DNA polymerase III (alpha chain) dnaE1 [Mycobacterium bovis
            BCG str. Pasteur 1173P2]
 gi|124600834|gb|EAY59844.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis C]
 gi|134149932|gb|EBA41977.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis str. Haarlem]
 gi|148505495|gb|ABQ73304.1| DNA polymerase III subunit alpha DnaE1 [Mycobacterium tuberculosis
            H37Ra]
 gi|148721298|gb|ABR05923.1| DNA polymerase III alpha subunit dnaE1 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis F11]
 gi|224773056|dbj|BAH25862.1| DNA polymerase III subunit alpha [Mycobacterium bovis BCG str. Tokyo
            172]
 gi|253320901|gb|ACT25504.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            KZN 1435]
 gi|289415920|gb|EFD13160.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            T46]
 gi|289420116|gb|EFD17317.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            CPHL_A]
 gi|289439293|gb|EFD21786.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            KZN 605]
 gi|289538662|gb|EFD43240.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            K85]
 gi|289543337|gb|EFD46985.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            T17]
 gi|289690701|gb|EFD58130.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            T92]
 gi|289694221|gb|EFD61650.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis EAS054]
 gi|289709216|gb|EFD73232.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis GM 1503]
 gi|289713227|gb|EFD77239.1| DNA polymerase III subunit alpha DnaE1 [Mycobacterium tuberculosis
            T85]
 gi|298494853|gb|EFI30147.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis
            94_M4241A]
 gi|308215828|gb|EFO75227.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu001]
 gi|308327494|gb|EFP16345.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu002]
 gi|308330956|gb|EFP19807.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu003]
 gi|308334777|gb|EFP23628.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu004]
 gi|308338566|gb|EFP27417.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu005]
 gi|308342267|gb|EFP31118.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu006]
 gi|308345762|gb|EFP34613.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu007]
 gi|308350062|gb|EFP38913.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu008]
 gi|308354716|gb|EFP43567.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu009]
 gi|308362582|gb|EFP51433.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu011]
 gi|308366247|gb|EFP55098.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu012]
 gi|323719995|gb|EGB29107.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            CDC1551A]
 gi|326903177|gb|EGE50110.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            W-148]
 gi|328459148|gb|AEB04571.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            KZN 4207]
          Length = 1184

 Score =  997 bits (2577), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1065 (32%), Positives = 547/1065 (51%), Gaps = 52/1065 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  +  +L ++     PA+ +TD  N+F A EF   A  AGI+P
Sbjct: 9    SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKP 68

Query: 70   IIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  I                       +   +   + ++   A G + L +L S  
Sbjct: 69   IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHA 128

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-F 178
                Q  +  R+    + E   EG+I+ TG  SG +         + A +    ++++  
Sbjct: 129  SFEGQLSKWSRMDAELIAE-HAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187

Query: 179  GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +R     ++++     +P +ATN+  +++ +    H+ L+ V   
Sbjct: 188  PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247

Query: 238  TVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPI--LP 293
              +S  +R +   D +YLK+ +EM  I+ D +P A ++T+ IA R      V  P   +P
Sbjct: 248  KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMP 307

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             F   +  D    + + LR++  AGL  R   G          YR+R  +E++VI    F
Sbjct: 308  VFPVPDGHD----QASWLRHEVDAGLRRRFPAGP------PDGYRERAAYEIDVICSKGF 357

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFLIVAD I +A+   I VGPGRGS AGS+ AYAL ITDIDP+   LLFERFLNP+R 
Sbjct: 358  PSYFLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERT 417

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471
            SMPD DIDF   RR E++RY  +K+GH+RVAQ+ITFG+++ KAAL+D  R    Q  ++ 
Sbjct: 418  SMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 477

Query: 472  VDRLCKLIPN-DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K +P    A  + L  I D S          R     DP V  + + ++ LEGL 
Sbjct: 478  ADRITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLI 537

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ LT++
Sbjct: 538  RNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTII 597

Query: 583  QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++D + A RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP   E
Sbjct: 598  GDAIDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFE 657

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQV 695
            D++A+++LYRPGP+       Y +RKN ++ I  IHP ++     +L ET G+I+YQEQ+
Sbjct: 658  DVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQI 717

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M+IAQ ++ YSL+ AD+LR+AMGKK +E ++K+ E F  G   NG S      +++ +  
Sbjct: 718  MRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILP 777

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FADY FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  I 
Sbjct: 778  FADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGIT 837

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            ++PP VN   ++F      I Y L A++ VG      +++   D   F    D+ +++D 
Sbjct: 838  VLPPDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDI 897

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGT 933
               N++V ESL+ AGA D  G++R  L     +        +K       ++F  ++ GT
Sbjct: 898  SACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGT 957

Query: 934  FSDKITL---EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--A 988
             +                  +   E+ +LG Y SGHPL+    +L           +   
Sbjct: 958  GTADPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGD 1017

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  +R+  ++ S  ++  + G         +     E  FFP
Sbjct: 1018 VPNDAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1062


>gi|298252640|ref|ZP_06976434.1| DNA polymerase III, alpha subunit [Gardnerella vaginalis 5-1]
 gi|297533004|gb|EFH71888.1| DNA polymerase III, alpha subunit [Gardnerella vaginalis 5-1]
          Length = 1178

 Score =  997 bits (2577), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1065 (32%), Positives = 544/1065 (51%), Gaps = 59/1065 (5%)

Query: 15   QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
              H+ YSLL+GA  + +++ +      PA+AITD  N+  A E    A  AGI+PIIG +
Sbjct: 2    HNHTHYSLLDGASKIPDLVARAKELGMPAVAITDHGNMHGAYEMWSTAVKAGIKPIIGIE 61

Query: 75   LDIDMQ------DNLKMTNQGKTPFPT-----VPSIVLLVSTAEGYQRLIELVSRMYLLD 123
              +  +        +    + +          +  + L      G   L++  S   L  
Sbjct: 62   AYVTPETARQDKSRVHWGTEDQRADDVSGGGLITHMTLWAENDTGLTNLLKASSVANLEG 121

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRL 182
            +  +  R+    L    ++G+I  +G  SG I         + A +    F+ +F  D  
Sbjct: 122  RVMRYPRMDKDVLSTY-SKGVIASSGCPSGIIQTRLRLGQFKEALRAAGEFQDIFGRDNF 180

Query: 183  YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ L  H    +      ++++A     PL+ATN+  ++ EED EA D ++ +   + + 
Sbjct: 181  FIELMNHGLSIETRVTKDLLEIAKKLNAPLLATNDLHYVHEEDREAQDAMLCINSGSRLD 240

Query: 242  QKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP--ILPRFIEK 298
              DR +     +YLK+  +M  +F + PEA +NT+EIARRC+ +         +P+F   
Sbjct: 241  DPDRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGEDGAFMPQFDCP 300

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E  D    E +    K   GLE R             +  ++ D+E  VI +M+F GYFL
Sbjct: 301  EGWD----ETSLFLKKVEEGLERRYNNNI------PMEVLKQADYECGVICQMQFCGYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++  L+FERFLNP+R+S+PD 
Sbjct: 351  VVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLNPERVSLPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK- 477
            D+DF  D R +V+ YV  KYG ++VAQ + +G+++ K AL+D  R +   +S  +++ K 
Sbjct: 411  DVDFDPDGRAKVLEYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKITKV 470

Query: 478  LIPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            L P      +SL  I D+          FRE    DP   R+ E ++ +EGL R    HA
Sbjct: 471  LPPAKNGKDMSLHDIFDEKSKRYAEAREFREMYDTDPDTHRITEEAKGIEGLIRQTGVHA 530

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               ++G  P++   P+  +       T F     E  GL+K DFLGL  LT+++ +L  +
Sbjct: 531  CATIMGSEPITNTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTVIRDTLRNI 589

Query: 590  AQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
               G    D + IP DD  TY LL+   TLG+FQL+S GMR  L  ++PD   DI AL++
Sbjct: 590  ENNGKDPIDYTKIPLDDKATYQLLSRGDTLGVFQLDSDGMRALLRTLKPDNFNDISALIA 649

Query: 649  LYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQIAQLL 702
            LYRPGP+D      Y  RKNG + I+ IHP     +  +L ET G+I+YQEQV   A++L
Sbjct: 650  LYRPGPMDMDSHTNYAKRKNGLQDIIPIHPEVAEPLKEVLDETYGLIVYQEQVQSAARIL 709

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +GYSL +ADVLRRAMGKK  E + K++  F  G   +G S+  A  ++++L  F+ Y FN
Sbjct: 710  AGYSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKAHGYSEEAAQAVWDVLVPFSGYAFN 769

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            K+H+AAY +ISY TA++KTHYPVEF+AA +  E  N +K   +  +AR+  IQ++ P VN
Sbjct: 770  KAHSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRMGIQVLQPDVN 829

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKLNRR 880
               +++    + + + L AI+ VG      I+         F +  DF  RV    LNRR
Sbjct: 830  ESVLEYSAVGDVVRFGLGAIRNVGDKAVNDIITEREGERGRFVNFMDFVQRVPISALNRR 889

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--------- 931
            ++ESL+ AGA D    +R  L Q  D        +++ +     ++FA            
Sbjct: 890  LVESLIKAGAFDSIDSNRRALFQICDPAIDSVIALKRKQAEGQFDLFADLDSSSDSDDDN 949

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI- 990
            G    +IT+      +   +   E+ +LG Y S HPL     +L  +      + +    
Sbjct: 950  GMGDMQITVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLADLREMSIAQLIDRAR 1009

Query: 991  ---RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                G  + +A +V S  ++ +RKG+    VT  +     +  FF
Sbjct: 1010 TMSDGQQVTIAGLVTSVDRRVSRKGNAWAIVTVEDMESSIQCMFF 1054


>gi|182439233|ref|YP_001826952.1| DNA polymerase III subunit alpha [Streptomyces griseus subsp. griseus
            NBRC 13350]
 gi|178467749|dbj|BAG22269.1| putative DNA polymerase III alpha subunit [Streptomyces griseus
            subsp. griseus NBRC 13350]
          Length = 1178

 Score =  997 bits (2577), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/1069 (31%), Positives = 544/1069 (50%), Gaps = 52/1069 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA+TD  NL  A +F   A  
Sbjct: 1    MTKPP-FTHLHVHTQYSLLDGAARLKDMFEAANEMGMTHIAMTDHGNLHGAYDFFHSAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            A + PIIG +  +  +                    +         +  S   G   L  
Sbjct: 60   ADVTPIIGIEAYVAPESRKHKRKVQWGQPHQKRDDVSGSGGYTHKTIWASNKTGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +           A +    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDY 178

Query: 175  KKLFGD-RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            K +FG+ R ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  KDIFGEGRYFLELMDHGIEIERRVRDGLLEIGKKLNIPPLVTNDSHYTYAHEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVH- 288
             +     +S  DR R     +YLK   EM ++ S     E   NT+ +A++         
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLKTTDEMYAVDSSDAWQEGCANTLLVAQQIDTTGMFEA 298

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P+F   +       E    + +   G+  R   G         D ++++++E+++I
Sbjct: 299  KNLMPKFEIPDGF----TEVTWFQEEVRVGMARRFPNGV------PDDRQKQVEYEMDII 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFL
Sbjct: 349  IQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  P
Sbjct: 409  NPERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y+  DRL K +P D     + L  I D            R    ++P V ++++ ++ +E
Sbjct: 469  YAMGDRLTKAMPADVLGKGIDLNGITDPKHPRYSEAGEIRGMYESEPDVKKVIDTAKGVE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   +G+ +++  +P DD +TY LL    TLG+FQ +   MR  L  MQPD
Sbjct: 589  TIMDDAIKMVKSNKGIDLEMLALPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQPD 648

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI A+ +LYRPGP+       Y  RKNG+++I  IHP ++  LKE    T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMNSHTNYAERKNGRQEITPIHPELEEPLKEVLGLTYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F  GA + G S     +++++
Sbjct: 709  EQVQKAAQIVAGYSLGEADILRRVMGKKKPEELAKNFVLFEKGAKEKGFSDAAIKSLWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             I+++PP+VN    +F   GD+ I + L AI+ VG      I+ +  A   + +  DF  
Sbjct: 829  GIKVLPPNVNESLSNFAAQGDDVILFGLTAIRNVGQNVVDSIIRSRKAKGKYSTFPDFLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +V++   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F   
Sbjct: 889  KVEAVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGGG 948

Query: 931  KGTFSDKITLEKFS----VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            +    +                +     E+ +LG Y S HPL   + +L         + 
Sbjct: 949  EEESGEPGFGLDVEFSDIEWEKAYLLAQEREMLGLYVSDHPLFGLEHVLSDKADSSISQL 1008

Query: 987  V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +      G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1009 MGGDYGDGAIVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1057


>gi|329118563|ref|ZP_08247267.1| DNA-directed DNA polymerase III alpha subunit [Neisseria
            bacilliformis ATCC BAA-1200]
 gi|327465298|gb|EGF11579.1| DNA-directed DNA polymerase III alpha subunit [Neisseria
            bacilliformis ATCC BAA-1200]
          Length = 1142

 Score =  996 bits (2576), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1035 (37%), Positives = 575/1035 (55%), Gaps = 34/1035 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P ++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F+ ++F +    AGI
Sbjct: 3    APVYIPLRLHTEFSITDGMVRIKEVVKKAQEYGFPALGISDLMNEFALVKFYKACRGAGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK- 126
            +P+    + I                      +L++    GY RL EL++  Y+ +    
Sbjct: 63   KPVGAADVWIGNP----------AAPDKPFRAMLIIRNEAGYLRLSELLTAAYVGEGRNL 112

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +   WL      GLI L+G   G +       +   A    L +   F +  Y+ L
Sbjct: 113  HHAELNPEWLDSGDNSGLICLSGAHLGEMGVNLLNGNEDAARAAALKYAAWFPNAFYLEL 172

Query: 187  QRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            QR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K 
Sbjct: 173  QRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKK 232

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RPR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   +   +
Sbjct: 233  RPRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDGLSL 292

Query: 304  QKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV
Sbjct: 293  ----DDYLVKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIV 348

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+
Sbjct: 349  QDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDV 408

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++  D+L KLIP
Sbjct: 409  DFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIP 468

Query: 481  NDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +   P+ L  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +
Sbjct: 469  LEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKI 527

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + D +       VD+
Sbjct: 528  SDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKATTGDIVDV 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI
Sbjct: 588  GTIPLDDQAAYKIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNI 647

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMG
Sbjct: 648  PDFVARMKGQE-FQYIHPLLEDILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMG 706

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW
Sbjct: 707  KKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAW 766

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837
            +K HYP EF+AA+M+ E+DN +++K F  D R   I  +PP +N     F   G+ +I Y
Sbjct: 767  LKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGITFLPPDINESSYRFVPDGNKQIRY 826

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            +L AIKG G      I+ A  A   F  L DFC RV    +NRR LE+L+  GA D    
Sbjct: 827  ALGAIKGTGEAAVESIIAAREAGGKFTGLLDFCERVGKDHMNRRTLEALIRGGAFDSIEP 886

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  L+ ++D   + A   +K        +F        + + L      + S +   E+
Sbjct: 887  NRAMLMANIDLAMENAD--QKAANANQGGLF-DMMDDAIEPVKLSAAPAWSESEKLAEEK 943

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             V+GFY SGHP   Y+  +R+               +++R+A      +    + G R  
Sbjct: 944  TVIGFYLSGHPFAPYEQEIRRFAPVSLGRLKTQ---DSVRVAGFATGVRTMNGKSG-RFA 999

Query: 1017 WVTFSEPAKEYEANF 1031
             V   + +   E + 
Sbjct: 1000 IVQLEDRSGFAEVSV 1014


>gi|285018805|ref|YP_003376516.1| DNA polymerase III, alpha chain protein [Xanthomonas albilineans GPE
            PC73]
 gi|283474023|emb|CBA16524.1| probable dna polymerase III, alpha chain protein [Xanthomonas
            albilineans]
          Length = 1198

 Score =  996 bits (2576), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1084 (37%), Positives = 608/1084 (56%), Gaps = 81/1084 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  F HL +H+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFAHLHIHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  L I                     + +L    +GY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADLLIADGS------------QAPWRLTVLCRNRDGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R +L     +  V +   WLQ  G++ L  L  G +    R        +AE++L
Sbjct: 110  SRLLTRAWLEGHRSEGGVALRPEWLQS-GSDNLFAL-AGRNSLAGRLASEGRHDLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R     +       +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRIFGDGLHLELTRTGRDGEEAFNQFALHAAGMRGLPVVASNDVRFLYASDFAAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   YLK+  EM ++F+D+P+AL+NT+ +A+RC+  +Q+  
Sbjct: 228  RVCISSGRVLDDPKRPREYSDQQYLKSAEEMAALFADIPDALDNTLALAQRCNLQMQLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   + + +    ++ +R+++  GL  RL +  +A G   QDY +RL+FEL+ I 
Sbjct: 288  YFLPAYPVPDDETL----DSWIRSQSRDGLAARLEKHPLAPGKTRQDYVERLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFPGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG +RV+QIIT+G++ AKA +RD GR L  PY
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRDRVSQIITYGTMAAKAVVRDCGRVLGFPY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLY 522
              VD + KLIPN     +   A+ +            +   ++  V  L++++++LE L 
Sbjct: 464  GLVDGVAKLIPNILGITLK-DAMGEGKDSEMAAPELIQRYQSEEDVRDLIDLARQLEDLT 522

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYR----DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            R+A  HA G+VI   PLS   P++     D     PVTQF+   +E+ GL+KFDFLGL+T
Sbjct: 523  RNAGKHAGGVVIAPTPLSDFCPLFAEHDVDHLGKNPVTQFDKDDVEQVGLVKFDFLGLRT 582

Query: 579  LTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQAL 632
            LT++  ++  +  R        V+++ IP DD  TY  +  +  T  +FQ ESSGMR+ L
Sbjct: 583  LTIIDWAVKAINVRHARAGIPAVEITAIPLDDVPTYKDIFASGSTGAVFQFESSGMRRLL 642

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +  +PD  ED+IALVSLYRPGP+D I  +N RK+G++ I+   P  + +LK+T G+++YQ
Sbjct: 643  KDAKPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQAILYPDPRTEAILKDTYGIMVYQ 702

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+ +  A  IF+L
Sbjct: 703  EQVMQMAQIVGGYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVGEAKADEIFDL 762

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R  
Sbjct: 763  MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCS 870
             + + PP +N     F+        Y L AIKGVG      I+        + SL DFC+
Sbjct: 823  GLTVRPPRINASAYMFEAATPDTIQYGLGAIKGVGRGACEAIVAERERGGAYISLMDFCT 882

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RV+S KLN+R LE+L+ AGA+D    +R  L+  L  + K  + + + R +   ++F + 
Sbjct: 883  RVESAKLNKRTLEALIHAGAMDGLDSNRATLMLQLPEVMKATEQMARERASGQNSLFGNA 942

Query: 931  KGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM---GIKGYEES 986
              +     + L +            E+  LGFY SGHP D Y+  +R++    +   E+ 
Sbjct: 943  DTSAPALHLNLPESKEWPLGQLLAGERETLGFYLSGHPFDPYREEVRELVGCDLGALEKI 1002

Query: 987  VATIRGNNIR------------------LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             A   G   R                  LA +VV  ++    KG    +V   +     E
Sbjct: 1003 CAQSNGGRGRSGEGDGEKRAWRPEVSAILAGLVVGVRR----KGDSQVFVQLEDGRGRIE 1058

Query: 1029 ANFF 1032
             + F
Sbjct: 1059 CSAF 1062


>gi|239940546|ref|ZP_04692483.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL
            15998]
 gi|239987031|ref|ZP_04707695.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL
            11379]
 gi|291443979|ref|ZP_06583369.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL
            15998]
 gi|291346926|gb|EFE73830.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL
            15998]
          Length = 1178

 Score =  996 bits (2576), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/1069 (31%), Positives = 542/1069 (50%), Gaps = 52/1069 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA+TD  NL  A +F   A  
Sbjct: 1    MTKPP-FTHLHVHTQYSLLDGAARLKDMFEAANEMGMTHIAMTDHGNLHGAYDFFHSAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            A + PIIG +  +  +                    +         +  S   G   L  
Sbjct: 60   ADVTPIIGIEAYVAPESRKHKRKVQWGQPHQKRDDVSGSGGYTHKTIWASNKTGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +           A +    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDY 178

Query: 175  KKLFGD-RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            K +FG+ + ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  KDIFGEGKYFLELMDHGIEIERRVRDGLLEIGKKLNIPPLVTNDSHYTYAHEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVH- 288
             +     +S  DR R     +YLK   EM ++ S     E   NT+ +A++         
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLKTTDEMYAVDSSDAWQEGCRNTLLVAQQIDTTGMFEA 298

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P+F   E       E    + +   G+  R   G         D ++++++E+++I
Sbjct: 299  KNLMPKFEIPEGF----TEITWFQEEVRRGMARRFPNGV------PDDRQKQVEYEMDII 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFL
Sbjct: 349  IQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  P
Sbjct: 409  NPERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y+  DRL K +P D     + L  I D            R     +P V ++++ ++ +E
Sbjct: 469  YAMGDRLTKAMPADVLGKGIDLNGITDPKHPRYSEAGEIRGMYENEPDVKKVIDTAKGVE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   +G+ +++  +P DD +TY LL    TLG+FQ +   MR  L  MQPD
Sbjct: 589  TIMDDAIKMVKSNKGIDLEMLSLPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQPD 648

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI A+ +LYRPGP+       Y  RKNG+++I  IHP ++  LKE    T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMNSHTNYAERKNGRQEITPIHPELEEPLKEVLGLTYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F  GA + G S      ++++
Sbjct: 709  EQVQKAAQIVAGYSLGEADILRRVMGKKKPEELAKNFVLFEKGAKEKGFSDAAIKALWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             I+++PP+VN    +F   GD+ I + L A++ VG      I+ +  A   + S  DF  
Sbjct: 829  RIKVLPPNVNESLSNFAAQGDDVILFGLTAVRNVGQNVVDSIIRSRKAKGKYSSFPDFLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +V++   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F   
Sbjct: 889  KVEAVVCNKRTIESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGGG 948

Query: 931  KGTFSDKITLEKFS----VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            +    +                +     E+ +LG Y S HPL   + +L         + 
Sbjct: 949  EEESGEPGFGLDVEFSDVEWEKAYLLAQEREMLGLYVSDHPLFGLEHVLSDKADASISQL 1008

Query: 987  V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   G+ + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1009 TGGDYSDGSVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1057


>gi|16079975|ref|NP_390801.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310864|ref|ZP_03592711.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315190|ref|ZP_03596995.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str. NCIB
            3610]
 gi|221320107|ref|ZP_03601401.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str.
            JH642]
 gi|221324389|ref|ZP_03605683.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str. SMY]
 gi|6166145|sp|O34623|DPO3A_BACSU RecName: Full=DNA polymerase III subunit alpha
 gi|2293260|gb|AAC00338.1| DNA-polymerase III alpha-chain [Bacillus subtilis]
 gi|2635388|emb|CAB14883.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp. subtilis
            str. 168]
          Length = 1115

 Score =  996 bits (2575), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1026 (37%), Positives = 591/1026 (57%), Gaps = 37/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQVHS YSLL  A ++  ++ +       ++A+TD + ++ A++F +   A GI P
Sbjct: 2    SFVHLQVHSGYSLLNSAAAVEELVSEADRLGYASLALTDDHVMYGAIQFYKACKARGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    +   D                 +VLL  +  GYQ L+++ S +    +G    
Sbjct: 62   IIGLTASVFTDD----------SELEAYPLVLLAKSNTGYQNLLKISSVLQSKSKGGLKP 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
                 WL     EG+I +T G  G I+        + A +  L F+ +F     Y + Q 
Sbjct: 112  ----KWLHSY-REGIIAITPGEKGYIETLLEGGLFEQAAQASLEFQSIFGKGAFYFSYQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +G ++    Q+++L+    +P+ AT +  ++ +ED  A+  L A+     ++      +
Sbjct: 167  FKG-NQVLSEQILKLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLTDAPAEDL 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             PD  LK   EM +I+ + PEAL+ +VEIA +C   + +    LP F   +        +
Sbjct: 226  -PDLDLKPLEEMQNIYREHPEALQASVEIAEQCRVDVSLGQTRLPSFPTPDG----TSAD 280

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L +  + GL  R        G   + Y +RL +EL+VI RMKFS YFLIV DF++ A 
Sbjct: 281  DYLTDICMEGLRSRF-------GKPDERYLRRLQYELDVIKRMKFSDYFLIVWDFMKHAH 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ AY L ITD+DP++  LLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 334  EKGIVTGPGRGSAAGSLVAYVLYITDVDPIKHHLLFERFLNPERVSMPDIDIDFPDTRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YVQ KYG   VAQIITFG+L AKAALRDVGR   +   + D+L KLIP+ P   + 
Sbjct: 394  EVIQYVQQKYGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPSRPGMTLD 453

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A     +  +       + ++  I++K+EGL RHASTHAAG+V+ + PL+ +VP+  +
Sbjct: 454  -EARQQSPQLDKRLRESSLLQQVYSIARKIEGLPRHASTHAAGVVLSEEPLTDVVPLQ-E 511

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHE 607
                + +TQ+ M  +E  GL+K DFLGL+ LTL++     +  +  +K+DLS I + D +
Sbjct: 512  GHEGIYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEKEENIKIDLSSISYSDDK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL+   T GIFQLES+GMR  L+ ++P  +EDI+A+ +LYRPGP++NI ++ +RK+G
Sbjct: 572  TFSLLSKGDTTGIFQLESAGMRSVLKRLKPSGLEDIVAVNALYRPGPMENIPLFIDRKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +  +   H  +  +L++T GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ KK KE +D+
Sbjct: 632  RAPVHYPHEDLRSILEDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKKKEILDR 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I  Q A++K HYP+ F
Sbjct: 692  ERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHYPLYF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N +KI ++  +A+   I+I+PPSVN     F V +  + YSL AIK VG 
Sbjct: 752  MCGLLTSVIGNEDKISQYLYEAKGSGIRILPPSVNKSSFPFTVENGSVRYSLRAIKSVGV 811

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +  + I +A  +KPF+ L DFC RV SK +NR++LE+L+F+GA+D FG +R  LL S+D 
Sbjct: 812  SAVKDIYKARKEKPFEDLFDFCFRVPSKSVNRKMLEALIFSGAMDEFGQNRATLLASIDV 871

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++A+    +  +    +F  E  +FS K    +            E+  LG YFS HP
Sbjct: 872  ALEHAELFAAD--DDQMGLFLDE--SFSIKPKYVETEELPLVDLLAFEKETLGIYFSNHP 927

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L  ++  L   G     ++   ++   + L  ++   +  +T+ G  + ++T S+   E 
Sbjct: 928  LSAFRKQLTAQGAVSILQAQRAVK-RQLSLGVLLSKIKTIRTKTGQNMAFLTLSDETGEM 986

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 987  EAVVFP 992


>gi|256379743|ref|YP_003103403.1| DNA polymerase III subunit alpha [Actinosynnema mirum DSM 43827]
 gi|255924046|gb|ACU39557.1| DNA polymerase III, alpha subunit [Actinosynnema mirum DSM 43827]
          Length = 1176

 Score =  996 bits (2575), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/1065 (33%), Positives = 542/1065 (50%), Gaps = 50/1065 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SF HL VH+ YS+L+GA  L ++  +       A AITD  N++ A +F ++A AAG+
Sbjct: 2    SDSFAHLHVHTEYSMLDGAAKLKDMFAECERLGMTAAAITDHGNMYGAYDFFRQATAAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +P+IG +  +  +                    +         +   T +G   L++  S
Sbjct: 62   KPVIGIEAYMAPESRFNKKRVTWGDPGQKADDVSASGAYTHQTIWARTVDGLHNLMKCSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            R     Q  +  R+    L E  ++GL+  TG  SG +         + A +    ++++
Sbjct: 122  RASTEGQLGKWPRMDAELLAE-HSKGLMATTGCPSGEVQTRLRLGHEKEAIEAAGKWREI 180

Query: 178  F-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            +  D  +V L  H    +R     +V +A   ++P V TN+S +   ED EAH+ L+ V 
Sbjct: 181  YGADNFFVELMDHGIELERRVRDGLVDIARKLDIPFVVTNDSHYTYAEDREAHEALLCVQ 240

Query: 236  HSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQV-HAPI 291
                +    R +     +YLK+  EM +I S     E   NT+ +A +           +
Sbjct: 241  TGKTLQDPSRFKFDGTGYYLKSPQEMYAIDSSDAWQEGCRNTLLVAEKVDTTDMFAFQNL 300

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +PR+   E       E +  R +   G+  R  +G        + + ++++FE+ VI +M
Sbjct: 301  MPRYPVPEGM----TEADYFREQVWEGMRRRFPEGVD------EVHTKQVEFEIGVILQM 350

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFL+VADFI WAK+N I VGPGRGS AG++ AYA+ ITD+DPL   L+FERFLNPD
Sbjct: 351  GFPSYFLVVADFINWAKENGIRVGPGRGSAAGALIAYAMGITDLDPLAHGLIFERFLNPD 410

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA--LQMPY 469
            R+S PD DIDF + RR +VIRYV +K+G ++VAQ+ITFG+++AKAA++D  R    Q  Y
Sbjct: 411  RVSPPDIDIDFDERRRGDVIRYVTDKWGDDKVAQVITFGTIKAKAAIKDSARVLYGQPGY 470

Query: 470  SQVDRLCKLIPND-PAHPVSL--------QAIADDSRFREARLADPSVDRLLEISQKLEG 520
            +  DR+ K +P       + L        +  A+ S  R     DP V  +++  + LEG
Sbjct: 471  AVADRISKAMPPAVMGKDIPLSGIFDPQHKRYAEASEVRGLYDTDPQVKEIIDTGRGLEG 530

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R+A  HA  +++   PL   +P+++  +    +TQF+    E  GL+K DFLGL  LT
Sbjct: 531  LIRNAGVHACAVIMSAEPLMDHIPVWKRPQDGSIITQFDYPTCETLGLLKMDFLGLSNLT 590

Query: 581  LLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
             +  +L  +A      VDL  +   D +TY LL+   TLG+FQL+   MR  L  M+PD 
Sbjct: 591  TIDDALKNMAINGKEPVDLDKLELTDKKTYQLLSKGDTLGVFQLDGGPMRDLLRLMRPDN 650

Query: 640  IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQE 693
             EDI A+ +LYRPGP+  ++   Y  RKN  ++I  IHP +    + +L  T G+I+YQE
Sbjct: 651  FEDISAVGALYRPGPMGANSHTNYALRKNKLQEITPIHPSLAEALEDILGTTYGLIVYQE 710

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVM IAQ L+GY+L +AD+LRRAMGKK KE +DK+   F +G   NG        ++E+L
Sbjct: 711  QVMAIAQKLAGYTLGQADLLRRAMGKKKKEILDKEFAGFEAGMLANGFPADAIKTLWEIL 770

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FADY FNK+H+AAY ++SY TA++K +YP EF+AA +T   DN +K   +  + R+  
Sbjct: 771  VPFADYAFNKAHSAAYGLVSYWTAYLKANYPAEFMAALLTTNSDNKDKSAIYLAECRRMG 830

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV 872
            I ++PP VN    +F      + + L AI+ VG      I++A  +   F    DF  +V
Sbjct: 831  ITVLPPDVNESEREFVAVGEDVRFGLGAIRNVGANVVDAIIKARKEKGRFTDFSDFLRKV 890

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D+   N++V+ESL+ AGA D   + R  L              +K       ++F     
Sbjct: 891  DATVCNKKVVESLIKAGAFDSLNHPRKGLHMVHVEAVDAIMLTKKEEARGQFDLFGDGGD 950

Query: 933  TFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-- 988
              +  +   +       S  +   E+ +LG Y SGHPL+  + +L           +   
Sbjct: 951  DGNGSVFDVRIPEEHWESKHQLTLEREMLGLYVSGHPLNGVEQVLDSYSDASIARILEGD 1010

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               G  + L  ++ S  ++  + G         + A   E  FFP
Sbjct: 1011 VADGTQVTLGGILASVTRRVNKNGEPWASAMLEDLAGGIEVLFFP 1055


>gi|124267439|ref|YP_001021443.1| DNA polymerase III subunit alpha [Methylibium petroleiphilum PM1]
 gi|124260214|gb|ABM95208.1| DNA polymerase III, alpha subunit [Methylibium petroleiphilum PM1]
          Length = 1174

 Score =  996 bits (2575), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1053 (39%), Positives = 597/1053 (56%), Gaps = 41/1053 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SPSFVHL+ H+ YS+++G L +++++   AAD+QPA+AITD +NLF A++F   A  
Sbjct: 1    MTSSPSFVHLRTHTEYSVVDGMLRVDDMVAAAAADEQPALAITDLSNLFGAIKFYGAARG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QP+IG  L ++ + + K              ++LLV    GY  L EL+S  +  + 
Sbjct: 61   KGVQPLIGADLWLEAESDEK----------QPSRLLLLVQNRTGYLNLCELISHAWTENL 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +    L +   +GLI L+G   G +  A     +  AE + L    LF  R Y+
Sbjct: 111  QRHQACVAWPQLAK-HGDGLIALSGADLGAVGLALLAGDAVRAEAQALRLAALFPGRFYL 169

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR     +  +   VV LA    LP+VAT+   FLS +D+EAH+  + +A    ++  
Sbjct: 170  ELQRAGQAGNEAQVRAVVPLAAKLGLPVVATHPVQFLSADDFEAHEARVCIAEGETLTNP 229

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T + + K  ++MV +F+D+P A+ NT+ IARRC   L +  P LP F     D 
Sbjct: 230  RRVKRFTREQHFKTAAQMVELFADIPSAIANTLAIARRCHLTLTLGKPQLPDFPTPIVDG 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   ++  R+ + AGL  RLAQ       +  H   Y +RLDFE+  I +M F GYFLI
Sbjct: 290  QRMAPDDYFRHASHAGLNERLAQLYPNEDERERHRARYVERLDFEIETILKMGFPGYFLI 349

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N  PVGPGRGSGAGS+ AYAL ITD+DPL ++LLFERFLNPDR+SMPDFD
Sbjct: 350  VADFINWAKGNGCPVGPGRGSGAGSLVAYALKITDLDPLAYNLLFERFLNPDRVSMPDFD 409

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAALRDVGR L M Y  VD + KL+
Sbjct: 410  IDFCQGNRDRVIDYVKQKYGRDAVSQIATFGTMAAKAALRDVGRVLGMGYGHVDSIAKLV 469

Query: 480  PNDPAHPVSLQ------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
            P  P   V+L+            A  +     +    +  V  LL +++++EG  R+   
Sbjct: 470  PAPPGKTVTLKRPGDRPDPGLIYARKEAPEIEQREQKEEEVAELLALAERVEGTVRNIGM 529

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HA G++I    ++   P+Y+   SD  V+Q++   +E  GL+KFDFLGL TLT+L+ + D
Sbjct: 530  HAGGVLIAPGKITDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILELAKD 589

Query: 588  FLAQRGVK---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            F+  R           I  DD +TY LL+   T+ +FQLES GM+  L   +P   EDII
Sbjct: 590  FIRTRHADRADFAFENIALDDRKTYQLLSEGKTVAVFQLESRGMQGMLREARPSVFEDII 649

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ALV+LYRPGP+D I  +  RK+GKE++   HPL+  +L+ET G+++YQEQVMQ+AQ L G
Sbjct: 650  ALVALYRPGPMDLIPSFCARKHGKEEVDYPHPLMREVLEETYGIMVYQEQVMQVAQRLGG 709

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YSL  AD+LRRAMGKK  EEM K +  F  GA+KNGI   +A  IF+L+ KFA YGFNKS
Sbjct: 710  YSLGGADLLRRAMGKKKAEEMAKHRVIFAEGAAKNGIGAGLANEIFDLMEKFAGYGFNKS 769

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAAAYA+++Y TAW K HY  EF AA+M++ +D+ +K+K F  DA    +    P VN  
Sbjct: 770  HAAAYALLAYHTAWAKVHYLAEFTAANMSVALDDTDKLKIFHDDAVSLGVVFEAPDVNAG 829

Query: 825  CVDFKV------GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKL 877
               F+          R+ Y L AIKG G      I++A  +  P+ SL DF +RVD  ++
Sbjct: 830  GYRFEPVAPQGKERGRVRYGLGAIKGTGQGAIEAIVDARREGGPYKSLFDFAARVDRSRV 889

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            N+RV+E+L+  GA D     R  L+ S+    +YA     N        F       +++
Sbjct: 890  NKRVVEALIKGGAFDALEADRAVLMASVPLAFEYADTQAANADQGGLFDFGDSHAASTNE 949

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
              L      +   R  +E+  LGFY SGH  D  +  +R+   +   + + +       L
Sbjct: 950  PDLVATEAWSIKERLTHEKAALGFYLSGHLFDECETEVRQFARRRIADLLDSREPQ--LL 1007

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            A +V   +    ++G R+      + ++  EA 
Sbjct: 1008 AGIVTELRVVNGQRG-RVAIFKLDDKSETIEAV 1039


>gi|312196291|ref|YP_004016352.1| DNA polymerase III subunit alpha [Frankia sp. EuI1c]
 gi|311227627|gb|ADP80482.1| DNA polymerase III, alpha subunit [Frankia sp. EuI1c]
          Length = 1178

 Score =  996 bits (2575), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1068 (34%), Positives = 576/1068 (53%), Gaps = 54/1068 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL VH+ YS+L+GA  L ++  +++  Q PA+AITD   ++ A +F ++A AAG+
Sbjct: 2    SDSFVHLHVHTEYSMLDGAARLKDMFTEVSRQQMPAVAITDHGYMYGAYDFHKQATAAGV 61

Query: 68   QPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIGC+  I  +  L             +   +   +   + +    AEG   L  L S
Sbjct: 62   KPIIGCEAYIAPESRLLKQRVRWGEPHQKSDDVSGSGSYTHMTIWARNAEGLHNLFRLNS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            R  +     +  R+    + E  + GL+  TG  SG +         ++A K   T++++
Sbjct: 122  RASIEGHYIKWPRMDREIISE-HSAGLMATTGCPSGEVQTRLRLGQPELALKAAATYQEI 180

Query: 178  F-GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  +  +  +  H    +R     +V +A    +  V TN+S +  E + E H  L+ V 
Sbjct: 181  FGPENYFCEIMDHGIEIERRVRDGLVDIARKLNMRFVVTNDSHYTYESERETHSALLCVQ 240

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSI-FSD-LPEALENTVEIARRCSFILQVHA-PIL 292
             ++ V+          ++LK+  +M +I +SD   E  + T+ IA R           ++
Sbjct: 241  TASTVANPSFQFEGSGYFLKSADQMRAIDYSDAWREGCDTTLLIAERVDTTGMFPKHNLM 300

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P +   E +     EE+  R + + G+E R   G   K      +R ++++E+ VI +M 
Sbjct: 301  PVYPTPEGE----TEESFFRAEVLRGMERRFPGGIDEK------HRTQVEYEIGVILQMG 350

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F  YFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DPL   L+FERFLNP+R
Sbjct: 351  FPSYFLVVADFIMWAKNNGIAVGPGRGSAAGSLIAYALGITDLDPLPHGLIFERFLNPER 410

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD DIDF   RR +VIRYV  K+G +R+AQI+T+G+++AKAA++D  R L  PY+  
Sbjct: 411  VSMPDIDIDFDDRRRADVIRYVTEKWGEDRIAQIVTYGTIKAKAAIKDSARVLGYPYAVG 470

Query: 473  DRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYR 523
            DR+ K +P       + L  I D +          R    +D  V ++++ ++ LEGL R
Sbjct: 471  DRITKAMPPMVMGKDIPLPGIFDPNHPRFSEAGEIRALYESDADVRKVIDTAKGLEGLIR 530

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
             A  HAAG+++   P+   +P++R     + +TQF+    E  GL+K DFLGL+ LT++ 
Sbjct: 531  QAGVHAAGVIMSAEPIIDHIPVWRRDADGVIITQFDYPTCENLGLLKMDFLGLRNLTVMD 590

Query: 584  KSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             ++  +   RG+K+DL  +  DD  TY LL+   TLG+FQL+   +R  L  M+PD  ED
Sbjct: 591  DAVRNVESNRGIKIDLLSLGLDDKTTYELLSRGDTLGVFQLDGGPLRSLLRLMRPDNFED 650

Query: 643  IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVM 696
            I A+++LYRPGP+  ++   Y  RKNG+++I+ IHP     +D +L  T G+I+YQEQVM
Sbjct: 651  ISAVIALYRPGPMGANSHTNYALRKNGQQEIIPIHPELGTALDEVLGTTYGLIVYQEQVM 710

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
             IAQ++ GYSL +AD+LRRAMGKK KE +DK+   F +G   NG S      ++++L  F
Sbjct: 711  AIAQVVGGYSLGQADLLRRAMGKKKKEILDKEFAPFSAGMKANGYSDAAIKTLWDILVPF 770

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            +DY FNK+H+AAY ++SY TA++K +YP E++AA +T   D+ +K   +  + R+  I++
Sbjct: 771  SDYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAALLTSVRDDKDKSAIYLNECRRMGIKV 830

Query: 817  MPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDS 874
            +PP VN    D+   G++ I   LAAI+ VG      I        P+ S  DF  +V++
Sbjct: 831  LPPDVNISDADYTAHGESEIRVGLAAIRNVGINVVESITRTRRTKSPYTSFPDFLDKVEA 890

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
               N+R +ESL+ AGA D FG++R  L++  +        V+K       ++FA   G  
Sbjct: 891  VVCNKRTIESLIKAGAFDSFGHTRRGLVEKHEQAVDAVMAVKKKTAEGQFDLFAF-GGDD 949

Query: 935  SDKITLEKF---------SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
             D   LE              + +V   NE+ +LG Y S HPL   + +L          
Sbjct: 950  EDGSPLETPGLGVGEFSEKEWDKAVLLSNEREMLGLYVSDHPLSGVEHVLAAKADTTVAN 1009

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             V    G  + +  ++ S Q+K T++G      T  +     E  FFP
Sbjct: 1010 LVDYPDGAVVTIGGIISSLQRKVTKQGKVWALTTIEDLEGGLEVMFFP 1057


>gi|320011307|gb|ADW06157.1| DNA polymerase III, alpha subunit [Streptomyces flavogriseus ATCC
            33331]
          Length = 1179

 Score =  996 bits (2575), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1070 (32%), Positives = 550/1070 (51%), Gaps = 53/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA+TD  NL  A +F   A  
Sbjct: 1    MSKPP-FTHLHVHTQYSLLDGAARLKDMFEACNDMGMSHIAMTDHGNLHGAYDFFHSAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  + + G   L +
Sbjct: 60   AGVTPIIGIEAYVAPESRKHKRKVQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFK 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +           A +    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDY 178

Query: 175  KKLFGD-RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            K +FG+ R ++ L  H    +R     ++++    ++P + TN+S +    +  AHD L+
Sbjct: 179  KDIFGEGRYFLELMDHGIEIERRVRDGLLEIGRKLDIPPLVTNDSHYTYANEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHA 289
             +     +S  DR R     +YLK   EM  + S     E   NT+ +A++         
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLKTTDEMYGVDSSDAWQEGCANTLLVAQQIDTTGMFEK 298

Query: 290  -PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P+F   E       E    + +  AG+  R   G        +D +++ ++E+++I
Sbjct: 299  RDLMPKFDIPEGF----TEITWFQEEVRAGMGRRYPGGV------PEDRQKQAEYEMDII 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFL
Sbjct: 349  IQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPITHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  P
Sbjct: 409  NPERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y+  DRL K +P D     + L  I D            R     +P V ++++ ++ +E
Sbjct: 469  YAMGDRLTKAMPADVLGKGIDLNGITDPKHPRYSEAGEIRGMYENEPDVRKVIDTAKGVE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   +GV +++  +P DD +TY LL    TLG+FQ +   MR  L  MQPD
Sbjct: 589  TIMDDAIKMVKANKGVDLEMLSLPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQPD 648

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI A+ +LYRPGP+       Y  RKN +++I  IHP ++  LKE    T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMNSHTNYAERKNARQEITPIHPELEEPLKEVLGLTYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  +E+ K    F +GA KNG S      ++++
Sbjct: 709  EQVQKAAQIVAGYSLGEADILRRVMGKKKADELAKNFVLFEAGAKKNGFSDAAIKALWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             I+++PP+VN    +F   GD+ I + L A++ VG+     I+    A   + +  DF  
Sbjct: 829  GIKVLPPNVNESESNFAAQGDDVILFGLTAVRNVGSNVVDSIIRCRKAKGKYSTFPDFLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +V++   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F   
Sbjct: 889  KVEAVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGGM 948

Query: 931  KGTFSDKITL---EKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                SD+       +FS      S     E+ +LG Y S HPL   + +L         +
Sbjct: 949  GDESSDEPGFGLDVEFSDIEWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKSDAAISQ 1008

Query: 986  SV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1009 LTGGEHADGAIVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|215403402|ref|ZP_03415583.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 02_1987]
 gi|289745303|ref|ZP_06504681.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 02_1987]
 gi|289685831|gb|EFD53319.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 02_1987]
          Length = 1184

 Score =  996 bits (2574), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1065 (32%), Positives = 547/1065 (51%), Gaps = 52/1065 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  +  +L ++     PA+ +TD  N+F A EF   A  AGI+P
Sbjct: 9    SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKP 68

Query: 70   IIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  I                       +   +   + ++   A G + L +L S  
Sbjct: 69   IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHA 128

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-F 178
                Q  +  R+    + E   EG+I+ TG  SG +         + A +    ++++  
Sbjct: 129  SFEGQLSKWSRMDAELIAE-HAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187

Query: 179  GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +R     ++++     +P +ATN+  +++ +    H+ L+ V   
Sbjct: 188  PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247

Query: 238  TVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPI--LP 293
              +S  +R +   D +YLK+ +EM  I+ D +P A ++T+ IA R      V  P   +P
Sbjct: 248  KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMP 307

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             F   +  D    + + LR++  AGL  R   G          YR+R  +E++VI    F
Sbjct: 308  VFPVPDGHD----QASWLRHEVDAGLRRRFPAGP------PDGYRERAAYEIDVICSKGF 357

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFLIVAD I +A+   I VGPGRGS AGS+ AYAL ITDIDP+   LLFERFLNP+R 
Sbjct: 358  PSYFLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERT 417

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471
            SMPD DIDF   RR E++RY  +K+GH+RVAQ+ITFG+++ KAAL+D  R    Q  ++ 
Sbjct: 418  SMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 477

Query: 472  VDRLCKLIPN-DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K +P    A  + L  I D S          R     DP V  + + ++ LEGL 
Sbjct: 478  ADRITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLI 537

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ LT++
Sbjct: 538  RNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTII 597

Query: 583  QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++D + A RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP   E
Sbjct: 598  GDAIDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFE 657

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQV 695
            D++A+++LYRPGP+       Y +RKN ++ I  IHP ++     +L ET G+I+YQEQ+
Sbjct: 658  DVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQI 717

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M+IAQ ++ YSL+ AD+LR+AMGKK +E ++K+ E F  G   NG S      +++ +  
Sbjct: 718  MRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILP 777

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FADY FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  I 
Sbjct: 778  FADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGIT 837

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            ++PP VN   ++F      I Y L A++ VG      +++   D   F    D+ +++D 
Sbjct: 838  VLPPDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDI 897

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGT 933
               N++V ESL+ AGA D  G++R  L     +        +K       ++F  ++ GT
Sbjct: 898  LACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGT 957

Query: 934  FSDKITL---EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--A 988
             +                  +   E+ +LG Y SGHPL+    +L           +   
Sbjct: 958  GTADPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGD 1017

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  +R+  ++ S  ++  + G         +     E  FFP
Sbjct: 1018 VPNDAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1062


>gi|321312457|ref|YP_004204744.1| DNA polymerase III DnaE [Bacillus subtilis BSn5]
 gi|320018731|gb|ADV93717.1| DNA polymerase III DnaE [Bacillus subtilis BSn5]
          Length = 1115

 Score =  996 bits (2574), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1026 (37%), Positives = 590/1026 (57%), Gaps = 37/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQVHS YSLL  A ++  ++ +       ++A+TD + ++ A++F +   A GI P
Sbjct: 2    SFVHLQVHSGYSLLNSAAAVEELVSEADRLGYASLALTDDHVMYGAIQFYKACKARGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    +   D                 +VLL  +  GYQ L+++ S +    +G    
Sbjct: 62   IIGLTASVFTDD----------SELEAYPLVLLAKSNTGYQNLLKISSVLQSKSKGGLKP 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
                 WL     EG+I +T G  G I+        + A +  L F+ +F     Y + Q 
Sbjct: 112  ----KWLHSY-REGIIAITPGEKGYIETLLEGGLFEQAAQASLEFQSIFGKGAFYFSYQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +G ++    Q+++L+    +P+ AT +  ++ +ED  A+  L A+     ++      +
Sbjct: 167  FKG-NQVLSEQILKLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLTDAPAEDL 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             PD  LK   EM +I+ + PEAL+ +VEIA +C   + +    LP F   +        +
Sbjct: 226  -PDLDLKPLEEMQNIYREHPEALQASVEIAEQCRVDVSLGQTRLPSFPTPDG----TSAD 280

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L +  + GL  R        G   + Y +RL +EL+VI RMKFS YFLIV DF++ A 
Sbjct: 281  DYLTDICMEGLRSRF-------GKPDERYLRRLQYELDVIKRMKFSDYFLIVWDFMKHAH 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ AY L ITD+DP++  LLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 334  EKGIVTGPGRGSAAGSLVAYVLYITDVDPIKHHLLFERFLNPERVSMPDIDIDFPDTRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YVQ KYG   VAQIITFG+L AKAALRDVGR   +   + D+L KLIP+ P   + 
Sbjct: 394  EVIQYVQQKYGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPSRPGMTLD 453

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A     +  +       + ++  I++K+EGL RHASTHAAG+V+ + PL+ +VP+  +
Sbjct: 454  -EARQQSPQLDKRLRESSLLQQVYSIARKIEGLPRHASTHAAGVVLSEEPLTDVVPLQ-E 511

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHE 607
                + +TQ+ M  +E  GL+K DFLGL+ LTL++     +  +  +K+DLS I + D +
Sbjct: 512  GHEGIYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEKEENIKIDLSSISYSDDK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL+   T GIFQLES+GMR  L+ + P  +EDI+A+ +LYRPGP++NI ++ +RK+G
Sbjct: 572  TFSLLSKGDTTGIFQLESAGMRSVLKRLTPSGLEDIVAVNALYRPGPMENIPLFIDRKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +  +   H  +  +L++T GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ KK KE +D+
Sbjct: 632  RAPVHYPHEDLRSILEDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKKKEILDR 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I  Q A++K HYP+ F
Sbjct: 692  ERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHYPLYF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N +KI ++  +A+   I+I+PPSVN     F V +  + YSL AIK VG 
Sbjct: 752  MCGLLTSVIGNEDKISQYLYEAKGSGIRILPPSVNKSSFPFTVENGSVRYSLRAIKSVGV 811

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +  + I +A  +KPF+ L DFC RV SK +NR++LE+L+F+GA+D FG +R  LL S+D 
Sbjct: 812  SAVKDIYKARKEKPFEDLFDFCFRVPSKSVNRKMLEALIFSGAMDEFGQNRATLLASIDV 871

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++A+    +  +    +F  E  +FS K    +            E+  LG YFS HP
Sbjct: 872  ALEHAELFAAD--DDQMGLFLDE--SFSIKPKYVETEELPLVDLLAFEKETLGIYFSNHP 927

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L  ++  L   G     ++   ++   + L  ++   +  +T+ G  + ++T S+   E 
Sbjct: 928  LSAFRKQLTAQGAVSILQAQRAVK-RQLSLGVLLSKIKTIRTKTGQNMAFLTLSDETGEM 986

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 987  EAVVFP 992


>gi|227500122|ref|ZP_03930193.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
 gi|227217837|gb|EEI83134.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
          Length = 1150

 Score =  996 bits (2574), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1053 (34%), Positives = 585/1053 (55%), Gaps = 48/1053 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G   ++ +LD+       +IAITD  +++ A+EF ++A    I+P
Sbjct: 4    NFTHLHVHTEYSLLDGFSRIDLLLDRAKELGMESIAITDHGSMYGAIEFYKQAKKRDIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +D+    +  +        ++LL  + EGY+ LI++VS  Y+ +      
Sbjct: 64   IIGCEVYVSEKDHKIKDSTNRR----YYHLILLAKSKEGYKNLIKIVSEAYV-NGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+   ++++     +I L+   +G +++    N  + A+K  L +++ F     ++ LQ 
Sbjct: 119  RVSFDFIKK-HAGDIIALSACLNGEVNQKILENDYEGAKKAALNYEEAFGKGNYFLELQN 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
            H   +     +++ ++     +PLVATN+  ++++ED+   DVL+ +    ++  +DR  
Sbjct: 178  HGIKEESLVNAKLNRIHQETAIPLVATNDVHYVNKEDFYYQDVLLCIQTGKLIKDEDRMR 237

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              + + YLK+  EM  IF+D  +AL NT  IA +C      H P LP F + E       
Sbjct: 238  MPSSEFYLKSYEEMEEIFADYEDALTNTKLIADQCKLEFTFHEPHLPYFSKVEE---GLS 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+     GL  +        G   ++ R R D E+NVI+ M +  YFLIV DF+++
Sbjct: 295  NLEYLKKLVDQGLIKKY-------GKIDKEIRSRADMEINVISSMGYVDYFLIVWDFVRY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ N+I VGPGRGS AGS+ +YAL IT IDP++++L+FERFLNP+R+SMPD DIDF    
Sbjct: 348  ARDNDIAVGPGRGSAAGSIVSYALDITQIDPIKYNLIFERFLNPERVSMPDIDIDFDYVL 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD V+ YV + YG + V+QIITFG +QA+ A+RDVGR L + Y++VD++ KLIP+     
Sbjct: 408  RDRVVDYVNDVYGRDHVSQIITFGRMQARNAIRDVGRVLDISYAKVDKIAKLIPSTLGMT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A    S+F+E   +D    RL++ ++KLEGL RH S HAAG+VI    L+ ++P+ 
Sbjct: 468  ID-KAFEASSKFKEIYESDLEGKRLIDTARKLEGLPRHTSIHAAGVVISKEALTDIIPL- 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
              + +D  VTQF+M  IE+ GL+K DFLGL+ LT+++ ++  + + RG+ VDL  I  +D
Sbjct: 526  -ALSNDQLVTQFDMTEIEELGLLKMDFLGLRNLTVIKNTIKDVKKNRGIDVDLGKIDVND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +         T+GIFQ ES+GMR  L+ ++P   +D+IA  SL+RPGP+D I  Y + K
Sbjct: 585  KKVIEQFNKAKTIGIFQFESAGMRNFLKNLRPTVFDDLIAANSLFRPGPMDEIPKYIHNK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  + +  I P + P+L  T G+I+YQEQVMQI Q L+GYSL EAD LRRAM KK    M
Sbjct: 645  NNPKDVSFITPALKPILDVTYGIIVYQEQVMQIVQKLAGYSLGEADNLRRAMSKKKMAVM 704

Query: 726  DKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            ++ +E FI             G  +NG+ +  A  I++ +  FA Y FNKSH+AAY++++
Sbjct: 705  EENREIFIHGRLDEKGEVEIAGCVRNGVDELSANQIYDEMISFAKYAFNKSHSAAYSLVA 764

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
             QTA++K +YP E++A  ++  MD   K+  +  + +   I+++PP VN    +F+V + 
Sbjct: 765  VQTAYLKHYYPEEYMANLISSVMDQSTKLYLYVNETKALGIEVLPPDVNKSLAEFRVEEG 824

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR---VDSKKLNRRVLESLVFAG 889
            RI + L+AIK +G      I+ A      F++ +DF  R   VD + LN++ +ESL+ AG
Sbjct: 825  RIIFGLSAIKNLGINMISAIVRARDKGGKFENFKDFLQRVDEVDQRALNKKGIESLIKAG 884

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--SDKITLEKFSVEN 947
            A D  GY+R  L+   +          K       N+          SD + ++  +   
Sbjct: 885  AFDRMGYNRSSLMAIYEKAMASVSENRKVNLKGQLNLLDDFSSVSKKSDDVKIQNINEYP 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI------KGYEES-VATIRGNNIRLAAM 1000
               + + E+ VLGFY S HPL      L               +  +  +    + +A +
Sbjct: 945  KKTKLKLEKEVLGFYISDHPLSDLADRLNDFVNFTSDYKDNLSDLEIQMLDKKFVSMAGV 1004

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +K +  T+K   + +    +     E   FP
Sbjct: 1005 ITNKSEIMTKKKQLMSFANLEDMYGSIEMVIFP 1037


>gi|239828024|ref|YP_002950648.1| DNA polymerase III subunit alpha [Geobacillus sp. WCH70]
 gi|239808317|gb|ACS25382.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70]
          Length = 1104

 Score =  996 bits (2574), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1026 (38%), Positives = 594/1026 (57%), Gaps = 41/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL V S YSLL     +++++ K    Q  A+A+TD N L+ A+ F  +    GI+P
Sbjct: 3    SFVHLHVRSCYSLLTSPAKISDLVKKAKDLQFSALALTDENVLYGAIPFYMECKRYGIRP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG   DI ++              +   +VLL     GYQ LI++ S +    Q     
Sbjct: 63   IIGMITDIVLEGE------------STYPLVLLAKNETGYQHLIKISSTIQTKTQEG--- 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL      GLI LT G SG I+     N    A++ L  +K++FGD  Y+++QR 
Sbjct: 108  -IPEKWLWHY-RGGLIALTPGKSGQIETLLAHNEITKAKQLLERYKQIFGDDFYLSVQRG 165

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E Q++ L+     PLVATN+  ++ +ED      L+A+    V+  K     
Sbjct: 166  ENKQQEPYEQQLIHLSNETNTPLVATNDVQYIEKEDAFVQHCLLAIKQGAVI--KTGMAT 223

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + YL +  EM   FSDLPEA+EN+ +IA +C   + +    LP++   E    ++  +
Sbjct: 224  DGERYLTSPEEMKKRFSDLPEAVENSRKIADQCHLHISLDTLKLPKYPVPE----KENAD 279

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR   + GL  R+          +  Y +RL++EL+VI +M FS YFLIV DF+ +A+
Sbjct: 280  HYLRRLCLKGLYERV-------SSPSDAYIKRLEYELDVIQQMDFSDYFLIVWDFMNFAR 332

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            K  I  GPGRGS AGS+ AY L ITDIDP+++ LLFERFLNP+R+SMPD DIDF  DRR+
Sbjct: 333  KKGIVTGPGRGSAAGSLVAYTLYITDIDPIQYGLLFERFLNPERVSMPDIDIDFPDDRRE 392

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YV NKYG + VAQIITFG+  AKAALRD+G+ LQ+   +++ + K +PN     + 
Sbjct: 393  EVIQYVANKYGQQYVAQIITFGTFGAKAALRDIGKVLQIDSKEMENIIKYVPNKHGITIQ 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +       FR+A  A   + + + I+ K+EGL RH STHAAG++I   PLSQ+VP+ + 
Sbjct: 453  -EVYHQSFAFRQAVQASSLLKQWIAIAMKVEGLPRHTSTHAAGVIISSEPLSQIVPLQQG 511

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
               +L +TQ+ M  +E+ GL+K DFLGL+TLTLL+     + Q+    +D+  IP DD +
Sbjct: 512  -HGELYLTQYPMDVLERLGLLKMDFLGLRTLTLLEHICRLIQQQTGKTIDVRSIPLDDRK 570

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY L++   T GIFQLES GM+  L+ ++P   EDI+A+ +LYRPGPID I  Y  RK+G
Sbjct: 571  TYELVSKGDTNGIFQLESDGMKHVLKQLKPSQFEDIVAVNALYRPGPIDYIPSYIKRKHG 630

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E +  +HP + P+L  T GV+IYQEQ+MQIA  ++G+SL +AD+LRRA+ KK KE +D+
Sbjct: 631  EENVSYLHPDLAPILAPTYGVLIYQEQIMQIAANIAGFSLGKADLLRRAVAKKKKEILDQ 690

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+  F+ G    G  +  A ++++++ +FA+YGFN+SHA AY+++SYQ A++K HYP+ F
Sbjct: 691  QRNEFVQGCIDQGYDEGFANDVYDMIVRFANYGFNRSHAVAYSMLSYQLAYLKAHYPLYF 750

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A +T  + + EK+  +  +AR+  I+I+PPS+N     F V   +I YSLAAIK VG 
Sbjct: 751  YTALLTSVIGDEEKVSLYIYEARRKQIEILPPSINQSRYSFSVEHEKIRYSLAAIKHVGI 810

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               + I++     PF    DFC R+  K +NR+ +ESL+ +G  D FG  R  LL S+D 
Sbjct: 811  AAVKAIVQERKKGPFADFFDFCVRLFGKGINRKTIESLILSGCFDEFGIERASLLASIDV 870

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++AQ V          +F+      S K    +    +   +   E+ +LG Y S HP
Sbjct: 871  ALEHAQLVGPYVEEG---LFSD----ISLKPKYVEAPSLSLEEKLMYEKELLGVYVSPHP 923

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
               Y+ + R  G++     +       +++   +V +++ +T+ G  + + T S+ + E 
Sbjct: 924  TSAYRKVFRLDGVRSVMSVIREKTDFPVKVGVYIVEERKTRTKTGKEMAFFTVSDESGEM 983

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 984  DVVAFP 989


>gi|187250629|ref|YP_001875111.1| DNA polymerase III subunit alpha [Elusimicrobium minutum Pei191]
 gi|186970789|gb|ACC97774.1| DNA polymerase III, alpha subunit [Elusimicrobium minutum Pei191]
          Length = 1167

 Score =  996 bits (2574), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1052 (35%), Positives = 608/1052 (57%), Gaps = 50/1052 (4%)

Query: 11   FVHLQVHSSYSLLEGALS-----LNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            FVHL  HS YSLL+G L       +  L ++AAD   A+AITD  N++ A++F + A AA
Sbjct: 3    FVHLHNHSEYSLLDGMLRLSEKGPSKFLKQVAADGFKAMAITDHGNMYGAMDFYKNAAAA 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIGC+  I    +       +        + LL    EGYQ L+ L+S+ +L D  
Sbjct: 63   GIKPIIGCEAYITNGSHKNK----EKGLDKTFHLTLLAKDYEGYQNLMALISKAWL-DGF 117

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYV 184
                RI    L +   +G++ L+G   G + +     +   A +   T++ +      Y+
Sbjct: 118  YYHPRIDKDILAQ-HAKGIMALSGCLKGEVSQELLNGTFAQACEYAKTYESILGKGNYYI 176

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L  H   +      ++++++ +  +P+VATN+  +  +ED++AHD+ M ++    +   
Sbjct: 177  ELMDHGIEEEQIILPKLIEVSKSTGIPVVATNDCHYEKQEDWQAHDIHMCISMGKTLDDP 236

Query: 244  DRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +R + +  + Y K+  EM  +FS +PEA+ NT+E+A +C+ ++     +LP F   +   
Sbjct: 237  NRLKSSTHELYFKSAQEMAELFSYIPEAVSNTLEVAEKCNVVMPKSGFVLPVF---DIPP 293

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               + ++ ++N    GL  +++      G    +Y++RLD+EL VI +M FS YFLIVAD
Sbjct: 294  SFSDTDSYIKNLCQEGLAKKMS------GIIPPNYQERLDYELGVIGKMGFSSYFLIVAD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI +A++N+IPVGPGRGSGAGS+ AY+L IT +DP++  LLFERFLNPDR+SMPD DIDF
Sbjct: 348  FIDYARQNHIPVGPGRGSGAGSIVAYSLNITKVDPIKNGLLFERFLNPDRLSMPDLDIDF 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              + R++VI YV+NKYG   VAQIITFG+++AK A++DV R L +P S+ +R+ KLIPND
Sbjct: 408  SDEGREQVINYVRNKYGETNVAQIITFGTMKAKMAVKDVARVLNIPVSESNRITKLIPND 467

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +   AI      ++   ++P   +L + ++KLEGL RHA  HAAGIV+    +S+ 
Sbjct: 468  LGTTID-SAIETVKELKQEIASNPQTAKLFDFAKKLEGLKRHAGIHAAGIVVTREEVSKY 526

Query: 543  VPMYRDVRSDLPVTQFNMKWI-EKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
             P+ R  + +   TQ+    + +  GL+K DFLGL+TLT++  ++D +   RG+ +D+  
Sbjct: 527  APLARGSK-EAITTQYEGGILADDLGLLKIDFLGLRTLTIIDNAVDIIKNMRGIDIDIDN 585

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP D+ +TY LL++  TLGIFQLES GMR  ++ ++P    DI ALV+LYRPGP+++ ++
Sbjct: 586  IPLDNKKTYELLSSAKTLGIFQLESGGMRDLVKRLKPSEFSDISALVALYRPGPMESGML 645

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK G+EKI    PL++P+LKET G ++YQEQ+M++++LL G++  +AD LR+AMG
Sbjct: 646  ESFVRRKAGQEKITYDTPLMEPVLKETYGTMVYQEQIMELSKLLGGFTPGQADSLRKAMG 705

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  +EM+K +  F++G +   I+   A  IFE ++KFA YGFNKSH+ AYA++SYQTA+
Sbjct: 706  KKKVDEMEKARVNFVNGCAGKKINPKTADKIFEQMSKFAGYGFNKSHSVAYALVSYQTAY 765

Query: 779  MKTHYPVEFLAASMTLE--------MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +K +YP+EF+ + +T E         D   KI  + ++A++   + + P VN    +F +
Sbjct: 766  LKANYPIEFMCSLLTNEIGHNAIGSDDKENKIVTYIEEAKKMGFETLGPDVNHSKENFSI 825

Query: 831  ----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                G   I + L A+K VGT  A  I+ A  D+P+   +D   R+D K  N++ +ESL+
Sbjct: 826  EEVNGKEIIRFGLEAVKNVGTEAAASIVSARGDRPYCGFQDLLERIDLKASNKKTIESLI 885

Query: 887  FAGALDCF------GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF---SDK 937
             AGALD          +R  +L  ++++ +    +++ + +   ++F  +   F     K
Sbjct: 886  KAGALDSLIPGKTPNSARAVMLAEMEDMLEITAKIKEEKESSICSLFGEDSSAFVSVKKK 945

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
             T             E E+ VLGFY SGHPL  YK  + K+     EE         + +
Sbjct: 946  ETKTAPRPLKQEQLLEMEKEVLGFYNSGHPLAKYKKHMDKIKSVTIEEINENNIKGAVNI 1005

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              ++   ++++ ++          +   +  A
Sbjct: 1006 LGIITRVKKRQNKRKEDWAQFIIEDETGQMSA 1037


>gi|258546181|ref|ZP_05706415.1| DNA polymerase III, alpha subunit [Cardiobacterium hominis ATCC
            15826]
 gi|258518606|gb|EEV87465.1| DNA polymerase III, alpha subunit [Cardiobacterium hominis ATCC
            15826]
          Length = 1177

 Score =  995 bits (2573), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1060 (38%), Positives = 599/1060 (56%), Gaps = 55/1060 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +HS +SL +  L +  I+D   +    AIA+TD NNL+ AL+F +KA AAGI+PI+
Sbjct: 5    THLHIHSEFSLSDSILRVGEIVDFAKSQGAEAIALTDRNNLYGALKFYKKARAAGIKPIL 64

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC L +            +    T   ++LL    +G+  L ELVS  Y  DQ  Q V +
Sbjct: 65   GCDLTV------------RDSDGTDNQLILLAQNLKGFIHLCELVSFAYQYDQDHQGVAV 112

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             +        EGLI L+GG  G + R      +Q AEKR   ++ +F DR Y+ L RH  
Sbjct: 113  HIERFTPTQCEGLIALSGGIDGDLARFLRRRDAQGAEKRAAFWQGIFPDRYYLQLARHGQ 172

Query: 192  Y-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              +               +  VATN + F + +DY+ H+V + +++  + +   RPR   
Sbjct: 173  PGEAEYFDWCRDAGRKLGIAAVATNLACFPTADDYDVHEVRVCISNGWLRADDKRPRYFT 232

Query: 251  DHYLKNRSE-MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              Y       M   F+D P+ L NT  +A RC+  L +    LP F   +  +I    E 
Sbjct: 233  QKYHFTSDAVMAERFADAPQILANTHAVAARCNLELTLGKNYLPDFPLPDGVNI----ET 288

Query: 310  ELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             L + A +GLE+RLAQ       +      Y +RL  EL VI +M F GYFLIVADFIQW
Sbjct: 289  FLIDSAKSGLELRLAQLFPDEAERAAKRAPYDERLAIELGVINQMGFPGYFLIVADFIQW 348

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK ++IPVGPGRGSGAGS+ AYAL ITD+DPL + L FERFLNP+R+SMPDFD+DFC +R
Sbjct: 349  AKDHDIPVGPGRGSGAGSLVAYALKITDLDPLAYDLFFERFLNPERVSMPDFDVDFCMER 408

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG +RV+QI T G++ AKA LRDVGR L +PY  VD+L   +P      
Sbjct: 409  RDEVIEYVSHKYGAQRVSQIATHGTMAAKAVLRDVGRVLGVPYPVVDKLVATVPPVLGIT 468

Query: 487  VSLQ-----AIADDSRFR-----EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +           D    R     E    D  +  +++I  +LEGL R+   HA G+VI  
Sbjct: 469  LPDALGRSTKSQDKPELRSEAMQELYEKDEEMRDIIDIGLQLEGLARNVGKHAGGVVIAP 528

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592
              L+    +Y +       TQF+   IE  GL+KFDFLGL+TLT++  +L  +  R    
Sbjct: 529  TKLTDFSALYSESAGAGIATQFDKDDIEAMGLVKFDFLGLRTLTVIDWALGHINARRTRE 588

Query: 593  -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +D++ +P DD +TY LL +  T  +FQLESSGM++ +  ++PD  EDIIALV+L+R
Sbjct: 589  GQPPLDIATLPLDDPQTYALLQSTRTTAVFQLESSGMKELIRKLRPDTFEDIIALVALFR 648

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+ + +V  + NRK+G  ++   HP ++ +L+ T GV++YQEQVMQ+AQ L+ YSL E
Sbjct: 649  PGPLGSGMVDDFINRKHGLAEVEYPHPDLEGILQTTYGVMVYQEQVMQVAQKLANYSLGE 708

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD LRRAMGKK  EEM + K+ F+S A + G+ +  A +IF+L+AKFA+YGFNKSH+AAY
Sbjct: 709  ADNLRRAMGKKKAEEMARNKDIFVSRAVERGVPEKQATDIFDLMAKFAEYGFNKSHSAAY 768

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQTAW+K HYP E +AA +T E++ ++KI +F  +AR   + ++PP +N     F 
Sbjct: 769  ALLSYQTAWLKAHYPAELMAAVLTSEIEKIDKIVRFINEARDMGLTVIPPCINRSQYTFT 828

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V     I Y L A+KGVG      ++E  A +  + SLED C R+D KKLNR+ LE+L+ 
Sbjct: 829  VSERGEIIYGLGAVKGVGEAAINILLEERAKNGDYTSLEDLCRRLDLKKLNRKTLETLIR 888

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT---LEKFS 944
            AG+ D    +R  L  +++   K A+   +NR     ++F     +  D+     +    
Sbjct: 889  AGSFDNIEPNRGALFAAVEQAIKLAEQHHRNRHQGQGDMFGLFGDSSRDQPPSLIMNPEE 948

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPIL----RKMGIKGYEESVA-----TIRGN-- 993
              +       E++ LG + S HP+D  +  L    R   +   +E++      T RG+  
Sbjct: 949  AWDLRQTLAEEKQTLGLFLSAHPIDEARDTLLQISRGRNLAQLQENMENWQRPTRRGDSI 1008

Query: 994  NIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
             + LA +V+  +   ++K G+ + ++T  + +   E   F
Sbjct: 1009 EVILAGVVIEARSMVSKKNGNPMIFLTIDDRSGRQEIGVF 1048


>gi|58616909|ref|YP_196108.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str. Gardel]
 gi|58416521|emb|CAI27634.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str. Gardel]
          Length = 1122

 Score =  995 bits (2573), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/1027 (45%), Positives = 668/1027 (65%), Gaps = 41/1027 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLL G + ++ +++       PA+A+TD+ NLF +LEFS  A  AG+QPI
Sbjct: 8    FVHLRSHSDYSLLRGMIKIDTLVNLCVQYNMPAVALTDSGNLFGSLEFSDHASNAGVQPI 67

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC + +    N             +  +VLL     GY  +I+LVS  +  +Q  +  R
Sbjct: 68   IGCNIMVHYHGN------------NIGELVLLAKNQAGYNNIIDLVSNSFKGNQSGKLNR 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKKLFGDRLYVNLQR 188
            I L+ L ++  +G+I+LTGG  G + +    +     V  K LL     F + LYV LQR
Sbjct: 116  IDLNRLIQL-KDGIIILTGGYEGLLAQLLLRDVIHYNVVNKLLLA----FENNLYVELQR 170

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    E+ +++ AY   LPLVATN+ LF+ +ED+ A+DVL  ++    V+Q+DR  
Sbjct: 171  HGIKEESIVETTLIKFAYEKNLPLVATNDVLFVKKEDFPAYDVLSCISDGHYVAQEDRKM 230

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T +HY K+  EM S+F D+PEA+ NT+ IA+RCSF+ ++  PILP F         K E
Sbjct: 231  FTAEHYFKSSQEMCSLFHDIPEAIYNTLLIAQRCSFMPEIRKPILPHFPCSSG----KNE 286

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL  +A+AGLE RL    +++    + Y +RL +EL+VI  M ++GYFLIV+DFI W+
Sbjct: 287  SQELITQALAGLEKRLKLKNLSEEDMVK-YHERLLYELDVIISMDYAGYFLIVSDFICWS 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++R
Sbjct: 346  KRNGIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQEKR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV+ KYG   VA IITFG LQA+A LRDVGR +Q+PY QVDR+CK+IP++P  PV
Sbjct: 406  DLVIEYVRKKYG--YVAHIITFGKLQARAVLRDVGRVMQIPYFQVDRICKMIPHNPVRPV 463

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L +AI  D   ++ R  D +V +LLEIS KLEGLYRH S HAAGIVI DR L +LVP+Y
Sbjct: 464  TLSEAIGMDKNLQKERDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRKLEELVPLY 523

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  + LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ +    + +RG  +D+  IP DD 
Sbjct: 524  YDSTAFLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICQLVRERGYVIDIVSIPLDDR 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L++  ++G+FQLESSGMR+ +  ++PD I DIIAL+SLYRPGP+DNI VY  RK+
Sbjct: 584  KTYEMLSSGDSIGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNIPVYIARKH 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G EK   IH +++ +LKET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKEEMD
Sbjct: 644  GLEKPDYIHSILEGVLKETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKEEMD 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+  FI+GA  NGI++  A  IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y +E
Sbjct: 704  NQRRTFINGAVNNGINQEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANYTIE 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  ASM L++ + +K++ FC  A+   I I+PP +N   V F +  + I Y+L A+K VG
Sbjct: 764  FFTASMNLDITDKDKLEMFCNQAKLHGISILPPDINYSKVFFVIEGSSIRYALGALKNVG 823

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  ++   +D  ++ + DF  R+ +K +++R+LE+++ AG LD    +R QL +S+ 
Sbjct: 824  QHAAHELI---SDVKYNDIWDFVDRISTKSVHKRMLENIIKAGVLDSIHSNRKQLFESVI 880

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                  ++ + N +    ++F  +         L +        +  NE   +GFY + H
Sbjct: 881  LFLDIIEYNKYNSSFNQISLFNDKN-----HYKLVETDDWTKEEKLYNEFSSIGFYLNNH 935

Query: 967  PLDVYKPILRKMGIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            P+  Y+ +L K+ I     ++ +       ++A ++ + + + +    +   VT S+P  
Sbjct: 936  PMQSYQDLLDKLNIGFINYDNKSAYNN---KVAGVISNIRVR-SANRDKFALVTLSDPNN 991

Query: 1026 EYEANFF 1032
             +E  F+
Sbjct: 992  IHEIAFY 998


>gi|297161306|gb|ADI11018.1| DNA polymerase III subunit alpha [Streptomyces bingchenggensis BCW-1]
          Length = 1181

 Score =  995 bits (2572), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1073 (32%), Positives = 547/1073 (50%), Gaps = 57/1073 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA+TD  NL  A +F Q+A  
Sbjct: 1    MTKPP-FTHLHVHTQYSLLDGAARLKDMFNACQEMGMTHIAMTDHGNLHGAYDFYQQATG 59

Query: 65   AGIQPIIGCQLDIDMQDN----------LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AGI PIIG +  +  +                    +         +  S   G   L  
Sbjct: 60   AGITPIIGIEAYVAPESRRYKRRVQWGQPHQKRDDVSGSGGYTHKTIWASNKAGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y+     +  R+    + +  +EGLI  TG  SG +           A K    +
Sbjct: 120  LSSDAYMEGYFVKWPRMDKETIAQW-SEGLIASTGCPSGELQTRLRLGQFDEALKAASEY 178

Query: 175  KKLF-GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  DR ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIEIERRVRDGLLEVGKKLGIPPLVTNDSHYTYSREAVAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFI-LQVH 288
             V     +S  DR R     +YLK+  EM +I S     E   NT+ +A +         
Sbjct: 239  CVQTGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCRNTLLVAEQIDATGWFEK 298

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++PRF   E       E +  + +   G+E R   G        +D +++ ++E++VI
Sbjct: 299  RDLMPRFDVPEGF----TEVSWFQEEVKRGMERRYPAGV------PEDRQKQAEYEMDVI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFL
Sbjct: 349  IQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIDHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VAQI T+G+++AK A++D  R L  P
Sbjct: 409  NPERVSMPDVDIDFDERRRGEVIRYVTEKYGADKVAQIGTYGTIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y+  DR+ K +P D     + L  I DD           R     +  V ++++ ++ +E
Sbjct: 469  YAMGDRITKAMPADVLGKGIPLSGITDDKHPRYSEAAEVRGMYENEADVKKVIDTARGIE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++    +++ VP++        VTQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSETVTEHVPVFSPKNDGQVVTQWDYPTCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  + A +GV + L  +P DD +TY LL    TLG+FQ +   MR  L  M+PD
Sbjct: 589  TIMDDAVKMVRANKGVDLKLLELPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRMMKPD 648

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI A+ +LYRPGP+     + Y  RKN +++I  IHP ++  LKE    T G+++YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMNSHINYALRKNAQQEITPIHPELEEPLKEVLGITYGLVVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+L+GYSL +AD+LRRAMGKK KE +DK+   F  G  + G S      ++++
Sbjct: 709  EQVQKAAQVLAGYSLGQADLLRRAMGKKKKEVLDKEFVPFQKGCRERGYSDAAIQAVWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVRDDKDKSAIYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCS 870
             I+++ P+VN    +F   GD+ I + L A++ VG      I+        + S  D+  
Sbjct: 829  GIKVLTPNVNESEANFAAQGDDVILFGLTAVRNVGANVVEAIIRGRKSKGKYSSFPDYLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +V++   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F   
Sbjct: 889  KVEAVVCNKRTTESLIKAGAFDEMGHTRKGLTAHYETMIDNVVAVKRKEAEGQFDLFGGM 948

Query: 931  KGTFSD--------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
             G  S          +        + +     E+ +LG Y S HPL   + +L       
Sbjct: 949  GGDDSGGDGPGFGLDVEFSDI-EWDKAYLLAQEREMLGLYVSDHPLFGIEHVLNDKADAA 1007

Query: 983  YEESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +        G  + +  ++   Q+K T++G+     T  + A   +  FFP
Sbjct: 1008 IAQLTGGEHADGAIVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIDCMFFP 1060


>gi|326779885|ref|ZP_08239150.1| DNA polymerase III, alpha subunit [Streptomyces cf. griseus
            XylebKG-1]
 gi|326660218|gb|EGE45064.1| DNA polymerase III, alpha subunit [Streptomyces cf. griseus
            XylebKG-1]
          Length = 1178

 Score =  995 bits (2572), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/1069 (31%), Positives = 544/1069 (50%), Gaps = 52/1069 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA+TD  NL  A +F   A  
Sbjct: 1    MTKPP-FTHLHVHTQYSLLDGAARLKDMFEAANEMGMTHIAMTDHGNLHGAYDFFHSAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            A + PIIG +  +  +                    +         +  S   G   L  
Sbjct: 60   ADVTPIIGIEAYVAPESRKHKRKVQWGQPHQKRDDVSGSGGYTHKTIWASNKTGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +           A +    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDY 178

Query: 175  KKLFGD-RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            K +FG+ + ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  KDIFGEGKYFLELMDHGIEIERRVRDGLLEIGKKLNIPPLVTNDSHYTYAHEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVH- 288
             +     +S  DR R     +YLK   EM ++ S     E   NT+ +A++         
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLKTTDEMYAVDSSDAWQEGCANTLLVAQQIDTTGMFEA 298

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P+F   +       E    + +   G+  R   G         D ++++++E+++I
Sbjct: 299  KNLMPKFEIPDGF----TEVTWFQEEVRVGMARRFPNGV------PDDRQKQVEYEMDII 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFL
Sbjct: 349  IQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  P
Sbjct: 409  NPERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y+  DRL K +P D     + L  I D            R    ++P V ++++ ++ +E
Sbjct: 469  YAMGDRLTKAMPADVLGKGIDLNGITDPKHPRYSEAGEIRGMYESEPDVKKVIDTAKGVE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   +G+ +++  +P DD +TY LL    TLG+FQ +   MR  L  MQPD
Sbjct: 589  TIMDDAIKMVKSNKGIDLEMLALPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQPD 648

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI A+ +LYRPGP+       Y  RKNG+++I  IHP ++  LKE    T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMNSHTNYAERKNGRQEITPIHPELEEPLKEVLGLTYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F  GA + G S     +++++
Sbjct: 709  EQVQKAAQIVAGYSLGEADILRRVMGKKKPEELAKNFVLFEKGAKEKGFSDAAIKSLWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             I+++PP+VN    +F   GD+ I + L AI+ VG      I+ +  A   + +  DF  
Sbjct: 829  GIKVLPPNVNESLSNFAAQGDDVILFGLTAIRNVGQNVVDSIIRSRKAKGKYSTFPDFLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +V++   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F   
Sbjct: 889  KVEAVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGGG 948

Query: 931  KGTFSDKITLEKFS----VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            +    +                +     E+ +LG Y S HPL   + +L         + 
Sbjct: 949  EEESGEPGFGLDVEFSDIEWEKAYLLAQEREMLGLYVSDHPLFGLEHVLSDKADSSISQL 1008

Query: 987  V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +      G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1009 MGGDYGDGAIVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1057


>gi|89100367|ref|ZP_01173231.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
 gi|89084886|gb|EAR64023.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
          Length = 1119

 Score =  995 bits (2572), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1028 (37%), Positives = 605/1028 (58%), Gaps = 38/1028 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF+HL V+S+YSLL   +S+  ++ +       AIA+TD N ++  ++F ++     I+P
Sbjct: 2    SFIHLHVYSAYSLLTSTVSVEQLVARAKQKGFSAIALTDRNVMYGTVQFYKECLKHSIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG   DI+     K  +           +VLL    +G+Q L+++ S +     G    
Sbjct: 62   IIGLCADIESAGGEKGPSP----------LVLLAQNQDGFQNLLKISSTLQTKADGG--- 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             I + WL+   + GLI LT G  G I++       + A + +  + ++F  DR Y+  Q 
Sbjct: 109  -IPVKWLKHYSS-GLIALTPGLEGEIEQYIAGGEEEKALEAIRLYTEIFGKDRFYLAYQD 166

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +  +   ++ +L+  H     A N   +  +ED  A + L+A+ +   +  ++R R
Sbjct: 167  HGLPEEKKINRKLKELSVNHGFQTAAANQVFYAEKEDAFAQECLLAIKNGDKLQDENRFR 226

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + + ++YLK   EM  +F++  EALENT++I  +C+ +L++    LP++   E D     
Sbjct: 227  LQSDEYYLKTAEEMSEVFTESTEALENTIKIMEQCNVMLELDKKHLPKYPVPEGD----- 281

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L      G   R  +        ++ +RQRL +EL +I +MKFS YFLIV DFI++
Sbjct: 282  ADTLLEELCWKGFAERYPEA-------SEVHRQRLLYELGIIKKMKFSDYFLIVWDFIKF 334

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++N I  GPGRGS AGS+ +Y L ITD DP+   LLFERFLNP+R+SMPD DIDF   R
Sbjct: 335  SRENGILTGPGRGSAAGSMVSYVLYITDADPIEHELLFERFLNPERISMPDIDIDFPDHR 394

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVIRYV  KYG   VAQIITFG+L AKAA+RD GR   +   +++++ +LIP+ P   
Sbjct: 395  RDEVIRYVAKKYGELHVAQIITFGTLAAKAAMRDTGRVFGLNAKELEQVSRLIPSRPGTN 454

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A  +  + R          RL E + K+EGL RH STHAAG+VI + PL  +VP+ 
Sbjct: 455  LKT-AYKESEQLRAFTAESSLNKRLFETALKIEGLPRHTSTHAAGVVISEFPLVNVVPIQ 513

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
            +     + +TQ++M+ +E AGL+K DFLGL+ L+L++  L  +  + G K D+  IP DD
Sbjct: 514  QG-HEGVYLTQYSMEHLEAAGLLKMDFLGLRNLSLIETILSSIQRKTGKKPDIKKIPLDD 572

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +TY LL++  T G+FQLES GMR  L+ ++P   EDI+A+ +LYRPGP++NI  + NRK
Sbjct: 573  EKTYRLLSSGETTGVFQLESDGMRNVLKKLKPTRFEDIVAVNALYRPGPMENIPSFINRK 632

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKE I   HP + P L++T GVI+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK K+ +
Sbjct: 633  HGKEPISYPHPDLKPYLEKTYGVIVYQEQIMQIASKMAGFSLGEADLLRRAVSKKQKDVL 692

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F SGA  +G  +  A  +++L+ +FA+YGFN+SHA AY+ I+YQ A++K +YP+
Sbjct: 693  DRERAHFASGAVSSGYDEKTAQEVYDLIVRFANYGFNRSHAVAYSFIAYQLAYLKANYPL 752

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F+AA ++    N +K+ ++ ++ +   + ++PPS+N+    F+     I YSLAA+KG+
Sbjct: 753  NFMAALLSQASGNEDKLAQYIRELKHLGLTLLPPSINSSGYSFQAESGGIRYSLAAVKGI 812

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G +  + +  A   K F+ L DFC RV +K   R++LE+ V +G+ D FG  R  LL +L
Sbjct: 813  GASVLKDVFHARRQKRFEDLFDFCIRVPAKSATRKILEAFVHSGSFDEFGEDRAVLLATL 872

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D   ++A+ V+ +  +  E+ F+ ++  FS K    +        + + E+  LG Y S 
Sbjct: 873  DIAIEHAELVKPDE-SGQEDFFSEDE--FSIKPKYAENDPIRIEDKLQYEKEYLGLYLSD 929

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+ VY      +G+    +     R  NIR AA +   ++ +T+KG  + +++ ++ + 
Sbjct: 930  HPVSVYAASFASLGVTQLADMEPGSR--NIRTAAYLSEVKKIRTKKGEAMAFLSLNDQSG 987

Query: 1026 EYEANFFP 1033
            E EA  FP
Sbjct: 988  EMEAVVFP 995


>gi|58696665|ref|ZP_00372218.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of
            Drosophila simulans]
 gi|58537166|gb|EAL60270.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of
            Drosophila simulans]
          Length = 1120

 Score =  994 bits (2571), Expect = 0.0,   Method: Composition-based stats.
 Identities = 469/1025 (45%), Positives = 658/1025 (64%), Gaps = 45/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS YSLLE ++ +  ++     ++ PA+AITD+ NLF +LEF++ A + GIQ I
Sbjct: 13   FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFAEYAASRGIQLI 72

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-V 129
            IGC + +   +                 I+LL    +GY  L+ LVS  +   +      
Sbjct: 73   IGCNIIVKHSE-------------QNLPILLLAKNEQGYTNLVTLVSESFRKRKNNSDIP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L  + + GLI LTG   G + +       +  EK L      F   LYV LQRH
Sbjct: 120  YVDFDELLNL-STGLIALTG---GCLAQLLLGQDKETVEKLLSA----FNGHLYVELQRH 171

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E  ++  AY   +PLVATN+  F +  DYEA+D+L  ++  +   + +R ++
Sbjct: 172  GLSKELELEETLIDFAYQRNIPLVATNDVFFPNRSDYEAYDILTCISEGSYALENNRKKL 231

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T +HY K+ +EM  +FSD+PEA+ NT+ IA+RCS++ +   PILP+F  +E     K E 
Sbjct: 232  TTEHYFKSVAEMEELFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCREN----KTEN 287

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             ELR +AVAGLE R+A          + Y  RL++EL+VI  M ++GYFLIV+DFI+W+K
Sbjct: 288  EELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSK 344

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N IPVGPGRGSGAGS+ A+ L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD
Sbjct: 345  ANGIPVGPGRGSGAGSIVAWGLQITDLDPIKFGLIFERFLNPDRISMPDFDIDFCQEKRD 404

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI YVQ KYG   VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+
Sbjct: 405  LVIDYVQKKYG--YVAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVT 462

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L QAI  D   ++ R +D  + +LL+IS KLEG+YRH STHAAGIVI D+ L   VP+Y 
Sbjct: 463  LSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYY 522

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D  S LP+TQ++MK++EKAGLIKFDFLGL TLTL+      + +   K+D+S +P DD +
Sbjct: 523  DPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDRQKIDISSVPLDDQK 582

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L++  ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  RK+G
Sbjct: 583  TYEMLSSGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHG 642

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             EK   IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEMDK
Sbjct: 643  LEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEMDK 702

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+E FI GA+KNG+    A  IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+EF
Sbjct: 703  QRELFIQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLEF 762

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A M L +D+ +K+  F   A+   + ++ P +N    +F + D RI Y +AA++ VG 
Sbjct: 763  FTALMNLNIDDRDKLNLFYHAAKFSGVTVLSPDINKSQAEFSIEDERIRYGIAALRNVGF 822

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            + A  I+   +      + +F        +N+R LESL+ +GA D    +R QL +S+D 
Sbjct: 823  SIAEGIVNVRSSAC-KDIWEFIQ-NSGHIINKRALESLIKSGAFDSVHKNRKQLYESMDT 880

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  +A   +++R +    +F         K  LE     +   + E+E   LGFY + HP
Sbjct: 881  LIYFANKNKQDRESSQAALFGSLDVL---KPKLENVEDFDEEEKLEHELFSLGFYLTNHP 937

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L+ ++ +L K+ I    E          + A ++++ + + + +G R   +T S+P    
Sbjct: 938  LEKFRTLLEKLNIGFIGE------NRTAKTAGVILNARMRTSERG-RFVILTLSDPHNVS 990

Query: 1028 EANFF 1032
            E  F+
Sbjct: 991  EIAFY 995


>gi|225630393|ref|YP_002727184.1| DNA polymerase III, alpha subunit [Wolbachia sp. wRi]
 gi|225592374|gb|ACN95393.1| DNA polymerase III, alpha subunit [Wolbachia sp. wRi]
          Length = 1158

 Score =  994 bits (2571), Expect = 0.0,   Method: Composition-based stats.
 Identities = 469/1025 (45%), Positives = 658/1025 (64%), Gaps = 45/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS YSLLE ++ +  ++     ++ PA+AITD+ NLF +LEF++ A + GIQ I
Sbjct: 51   FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFAEYAASRGIQLI 110

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-V 129
            IGC + +   +                 I+LL    +GY  L+ LVS  +   +      
Sbjct: 111  IGCNIIVKHSE-------------QNLPILLLAKNEQGYTNLVTLVSESFRKRKNNSDIP 157

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L  + + GLI LTG   G + +       +  EK L      F   LYV LQRH
Sbjct: 158  YVDFDELLNL-STGLIALTG---GCLAQLLLGQDKETVEKLLSA----FNGHLYVELQRH 209

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E  ++  AY   +PLVATN+  F +  DYEA+D+L  ++  +   + +R ++
Sbjct: 210  GLSKELELEETLIDFAYQRNIPLVATNDVFFPNRSDYEAYDILTCISEGSYALENNRKKL 269

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T +HY K+ +EM  +FSD+PEA+ NT+ IA+RCS++ +   PILP+F  +E     K E 
Sbjct: 270  TTEHYFKSVAEMEELFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCREN----KTEN 325

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             ELR +AVAGLE R+A          + Y  RL++EL+VI  M ++GYFLIV+DFI+W+K
Sbjct: 326  EELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSK 382

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N IPVGPGRGSGAGS+ A+ L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD
Sbjct: 383  ANGIPVGPGRGSGAGSIVAWGLQITDLDPIKFGLIFERFLNPDRISMPDFDIDFCQEKRD 442

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI YVQ KYG   VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+
Sbjct: 443  LVIDYVQKKYG--YVAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVT 500

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L QAI  D   ++ R +D  + +LL+IS KLEG+YRH STHAAGIVI D+ L   VP+Y 
Sbjct: 501  LSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYY 560

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D  S LP+TQ++MK++EKAGLIKFDFLGL TLTL+      + +   K+D+S +P DD +
Sbjct: 561  DPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDRQKIDISSVPLDDQK 620

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L++  ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  RK+G
Sbjct: 621  TYEMLSSGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHG 680

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             EK   IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEMDK
Sbjct: 681  LEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEMDK 740

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+E FI GA+KNG+    A  IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+EF
Sbjct: 741  QRELFIQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLEF 800

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A M L +D+ +K+  F   A+   + ++ P +N    +F + D RI Y +AA++ VG 
Sbjct: 801  FTALMNLNIDDRDKLNLFYHAAKFSGVTVLSPDINKSQAEFSIEDERIRYGIAALRNVGF 860

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            + A  I+   +      + +F        +N+R LESL+ +GA D    +R QL +S+D 
Sbjct: 861  SIAEGIVNVRSSAC-KDIWEFIQ-NSGHIINKRALESLIKSGAFDSVHKNRKQLYESMDT 918

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  +A   +++R +    +F         K  LE     +   + E+E   LGFY + HP
Sbjct: 919  LIYFANKNKQDRESSQAALFGSLDVL---KPKLENVEDFDEEEKLEHELFSLGFYLTNHP 975

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L+ ++ +L K+ I    E          + A ++++ + + + +G R   +T S+P    
Sbjct: 976  LEKFRTLLEKLNIGFIGE------NRTAKTAGVILNARMRTSERG-RFVILTLSDPHNVS 1028

Query: 1028 EANFF 1032
            E  F+
Sbjct: 1029 EIAFY 1033


>gi|325962960|ref|YP_004240866.1| DNA-directed DNA polymerase III PolC [Arthrobacter phenanthrenivorans
            Sphe3]
 gi|323469047|gb|ADX72732.1| DNA-directed DNA polymerase III PolC [Arthrobacter phenanthrenivorans
            Sphe3]
          Length = 1185

 Score =  994 bits (2571), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1071 (34%), Positives = 552/1071 (51%), Gaps = 55/1071 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              + SFVHL  H+ YS+L+GA  L  + D+      PA+A TD   LF A +F +KA   
Sbjct: 3    SSNDSFVHLHTHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWKKATDK 62

Query: 66   GIQPIIGCQLDIDMQ------DNLKMTNQGKTPFP-----TVPSIVLLVSTAEGYQRLIE 114
            GI+PIIG +  +           ++   + +         +   + LL     G + L  
Sbjct: 63   GIKPIIGVEAYVTPGTARGDKSRVRWGEEHQRKDDISGGGSYTHMTLLSYNNAGMRNLFR 122

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
              S   L     +  R+    L    +EGLI  TG  SG I         + A +    F
Sbjct: 123  ASSIASLDAVFGKWPRLDRELLNTY-SEGLIATTGCPSGEIQTRLRLGQYREALEAAAEF 181

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  +  +  L  H    +R     +++LA    LPLVATN+  +  E D +AH+ L+
Sbjct: 182  RDIFGAENYFCELMDHGLDIERRVTGDLLRLAKDLNLPLVATNDLHYTHEHDAKAHEALL 241

Query: 233  AVAHSTVVSQKDRP-------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            A+   + + +                +YLK+  EM  +F D P+A +NT+ IA RC    
Sbjct: 242  AIQSGSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMRELFRDHPDACDNTLLIAERCEVSF 301

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
               A  +PRF     +D    E + L  +   GLE R   G         + R + D+EL
Sbjct: 302  NTGANYMPRFPCPPGED----ETSWLVKEVAKGLEYRYPGGV------PDNVRAQADYEL 351

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VI  M F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPLR  L+FE
Sbjct: 352  GVITSMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLRHGLIFE 411

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNPDR+SMPDFD+DF   RR EVI YV  KYG ERVA I+T+G+++ K AL+D  R L
Sbjct: 412  RFLNPDRVSMPDFDVDFDDRRRPEVIDYVTRKYGDERVAMIVTYGTIKTKQALKDSSRVL 471

Query: 466  QMPYSQVDRLCKLIPND-PAHPVSL--------QAIADDSRFREARLADPSVDRLLEISQ 516
              P+S  ++L K +P    A  + L        +   +   FR+    DP   ++ E + 
Sbjct: 472  GYPFSMGEQLTKALPPAVMAKDIPLADIQNPEAKRYGEAGDFRQLISTDPEAAKVFETAL 531

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             +EGL R    HAAG+++   P+  ++P+ R ++    +TQF+    E  GLIK DFLGL
Sbjct: 532  GIEGLKRQWGVHAAGVIMSSDPIIDVIPIMRRIQDGQVITQFDYPTCEGLGLIKMDFLGL 591

Query: 577  KTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            + LT++  +L+ +   RG+ +DL  +  DD  +Y LL    TLG+FQL+   MR  L+ M
Sbjct: 592  RNLTIISDALENIKLNRGIDLDLENLELDDAPSYELLARGDTLGVFQLDGGPMRSLLKLM 651

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVI 689
            +PD  EDI A+++LYRPGP+  +    Y  RKNG + ++ IHP ++     +L  T G+I
Sbjct: 652  KPDNFEDISAVLALYRPGPMGANAHTDYALRKNGIQPVIPIHPELEEPLSEILGGTYGLI 711

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVM +AQ L+GYSL +AD+LRRAMGKK K E+DKQ   F  G   NG S      +
Sbjct: 712  VYQEQVMAVAQKLAGYSLGQADILRRAMGKKKKSELDKQFAGFSQGMQDNGYSMEAVKTL 771

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +++L  F+DY FNK+H+AAY VISY TA++K HY  E++AA +T   D+ +K   +  + 
Sbjct: 772  WDILLPFSDYAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDKSAIYLNEC 831

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDF 868
            R+  I ++PP VN   ++F    N I + + AI+ VG      ++ A   +  F S +D+
Sbjct: 832  RRMGITVLPPDVNESALNFTPVGNDIRFGMGAIRNVGVNVVEAMVAARESEGAFTSFKDY 891

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              +V +   N+R +ESL+ +GA D  G+ R  L    +        +++N      ++FA
Sbjct: 892  LMKVPAVVCNKRTIESLIKSGAFDSLGHHRRALAMIHEEAIDSVITLKRNEAIGQFDLFA 951

Query: 929  H---EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL---RKMGIKG 982
                 +   S  I +          +   E+ +LG Y S HPL   + +L    +M I  
Sbjct: 952  GFEEAESESSLSIEIPDLPEWEKKDKLSFERDMLGLYVSDHPLQGLEGLLSQHAEMSITS 1011

Query: 983  YEESVATIRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     G  I +A M+ S  ++     G+        +     E  FF
Sbjct: 1012 VLGEDGPQDGAIITIAGMITSLSRRIAKASGNAYARAEVEDLGGSMEVMFF 1062


>gi|296332089|ref|ZP_06874553.1| DNA polymerase III DnaE [Bacillus subtilis subsp. spizizenii ATCC
            6633]
 gi|305675516|ref|YP_003867188.1| DNA polymerase III subunit alpha [Bacillus subtilis subsp. spizizenii
            str. W23]
 gi|296150860|gb|EFG91745.1| DNA polymerase III DnaE [Bacillus subtilis subsp. spizizenii ATCC
            6633]
 gi|305413760|gb|ADM38879.1| DNA polymerase III, alpha subunit [Bacillus subtilis subsp.
            spizizenii str. W23]
          Length = 1115

 Score =  994 bits (2571), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1026 (37%), Positives = 586/1026 (57%), Gaps = 37/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQVHS YSLL  A ++  ++ +       ++A+TD + ++ A++F +   A GI P
Sbjct: 2    SFVHLQVHSGYSLLNSAAAVEELVSEAERLGYASLALTDDHVMYGAIQFYKACKARGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    +   DN                +VLL  +  GYQ L+++ S +    +G    
Sbjct: 62   IIGLTASVFTDDN----------GLEAYPLVLLAKSNTGYQNLLKISSVLQSKSKGGLKP 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
                 WL     EG+I +T G  G I+        + A +  L F+ +F     Y + Q 
Sbjct: 112  ----KWLHSY-REGIIAITPGEKGYIEMLLEEGLFEQAAQAALEFQSIFGKGAFYFSYQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +G ++    Q+++L+    +P+ AT +  ++ +ED  A+  L A+     ++      +
Sbjct: 167  FKG-NQALSEQILRLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLTDAPAEDL 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             PD  LK   EM +I+ + PEAL+ +VEIA++C   + +    LP F            +
Sbjct: 226  -PDLDLKPLEEMQNIYREHPEALQESVEIAKQCRVDVSLGQTRLPSFPTPNG----TSAD 280

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L +  +AGL  R        G   + Y +RL +EL VI RMKFS YFLIV DF+++A 
Sbjct: 281  DYLTDICMAGLRSRF-------GTPDERYLRRLQYELGVIKRMKFSDYFLIVWDFMKYAH 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I  GPGRGS AGS+ AY L ITD+DP+   LLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 334  DKGIVTGPGRGSAAGSLVAYVLYITDVDPINHHLLFERFLNPERISMPDIDIDFPDTRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YVQ KYG   VAQIITFG+L AKAALRDVGR   +   + D+L KLIP  P   + 
Sbjct: 394  EVIQYVQQKYGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPARPGMTLD 453

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A     +  +       + ++  +++K+EGL RH STHAAG+V+ + PL+ +VP+  +
Sbjct: 454  -EARKQSPQLDKRLRESSLLQQVYMVARKIEGLPRHTSTHAAGVVLSEEPLTDVVPLQ-E 511

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHE 607
                + +TQ+ M  +E  GL+K DFLGL+ LTL++     +  +  +K+DLS I + D +
Sbjct: 512  GHEGIYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEKEENIKIDLSSISYRDDK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL+   T GIFQLES+GMR  L+ ++P  +EDI+A+ +LYRPGP++NI ++ +RK+G
Sbjct: 572  TFSLLSKGDTTGIFQLESAGMRSVLKRLKPSGLEDIVAVNALYRPGPMENIPLFIDRKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +  +   H  +  +L++T GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ KK K+ +D+
Sbjct: 632  RAPVHYPHEDLRSILEDTYGVIVYQEQIMVIASRMAGFSLGEADLLRRAVSKKKKDILDQ 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I  Q A++K HYP+ F
Sbjct: 692  ERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHYPLYF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N +KI ++  +A+   I+I+PPSVN     F V D  + YSL AIK VG 
Sbjct: 752  MCGLLTSVIGNEDKIAQYLYEAKGSGIRILPPSVNKSSYPFTVEDGAVRYSLRAIKSVGI 811

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +  + I +A  +KPF+ L DFC RV SK +NR+ LE+L+F+GA+D FG +R  LL S+D 
Sbjct: 812  SAVKDIYKARKEKPFEDLFDFCFRVPSKSVNRKTLEALIFSGAMDEFGQNRATLLASIDV 871

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++ +    +  +    +F  E  +FS K    +            E+  LG YFS HP
Sbjct: 872  ALEHTELFAAD--DDQMGLFLDE--SFSIKPKYVETEELPLVDLLAFEKETLGIYFSNHP 927

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L  Y+  L   G     ++    +   + L  ++   +  +T+ G  + ++T S+   E 
Sbjct: 928  LSAYRKQLAAHGAVSILQAQQAFK-RQLSLGVLLSKIKTIRTKTGQNMAFLTLSDETGEM 986

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 987  EAVVFP 992


>gi|311895500|dbj|BAJ27908.1| putative DNA polymerase III subunit alpha [Kitasatospora setae
            KM-6054]
          Length = 1175

 Score =  994 bits (2570), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/1066 (32%), Positives = 551/1066 (51%), Gaps = 49/1066 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P + HL VH+ YS+L+GA  L  +  ++    Q  +A+TD  N++ A EF ++A A
Sbjct: 1    MSDQP-YAHLHVHTEYSMLDGAARLKQLFAEVGRLGQTHVAMTDHGNMYGAAEFHKQAVA 59

Query: 65   AGIQPIIGCQLDIDMQDN----------LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AGI P+IG +  +  +                    +         +     EG   L +
Sbjct: 60   AGITPVIGIEAYVAPESRSNTKRILWGQPHQKRDDVSASGAYTHKTIWARNKEGLHNLFK 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L SR Y      +  R+    + E    GL+  TG  SG +           A +    +
Sbjct: 120  LTSRSYAEGWLVKWPRMDKEIIAE-HAAGLMATTGCPSGEVQTRLRLGQFDEALRSAGEY 178

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +++F  +  ++ L  H    +      +V++     +P V TN+S + +E D  AHD+L+
Sbjct: 179  QEIFGRENYFLELMDHGLEIEGRVRDGLVEIGRRLNIPPVVTNDSHYTTEADAGAHDLLL 238

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD--LPEALENTVEI-ARRCSFILQVH 288
             V     +S  DR R     +Y+K+ +EM  + S     E   N+  + A R        
Sbjct: 239  CVQTGKNLSDPDRFRFDGTGYYVKSAAEMYGLDSSDIWQEGCRNSQLLVAERVDTTGMFE 298

Query: 289  -APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
               ++PRF   E       E    R K   G++ R   G      + +++R+  ++E++ 
Sbjct: 299  FKNLMPRFPIPEGFG---SEAEFFRAKVWEGMDRRFPGG------YDEEHRELAEYEMDT 349

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I +M F  YFL+VADFI WAK   I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERF
Sbjct: 350  IVQMGFPAYFLVVADFIMWAKSQGIAVGPGRGSAAGSLVAYAMGITDLDPIPHGLIFERF 409

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPD DIDF + RR +VIRYV  K+G ++VA I+T+G+++AKAA++D  R L  
Sbjct: 410  LNPERVSMPDVDIDFDERRRADVIRYVTEKWGSDKVAMIVTYGTIKAKAAIKDSSRVLGY 469

Query: 468  PYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKL 518
            PY+  DR+ K +P D     + L  I D +          R     DP V ++++ ++ +
Sbjct: 470  PYAMGDRITKAMPPDVMGKGIPLSGITDSAHPRYGEAGEIRALYENDPDVKKVIDTARGI 529

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R    HAAG+++   PL+  +P++      + +TQF+    E  GL+K DFLGL+ 
Sbjct: 530  EGLIRQPGVHAAGVIMSAEPLTDHIPVWTRHTDGVTITQFDYPTCEGLGLLKMDFLGLRN 589

Query: 579  LTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  ++  +   +GV+++L  +P DD   Y LL    TLG+FQL+   MR  L  M+P
Sbjct: 590  LTIMDDAVKAIERNKGVRIELLQLPLDDKPAYELLARGDTLGVFQLDGGPMRSLLRLMKP 649

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIY 691
            D  EDI A+++LYRPGP+  ++   Y  RKNG+++I  IHP     +  +L+ T G+I+Y
Sbjct: 650  DNFEDISAVLALYRPGPMGVNSHTNYALRKNGQQEITPIHPELAEPLREVLEPTYGLIVY 709

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQV + AQ+L+GYSL +AD+LRRAMGKK KE ++ +   F  G  + G S      +++
Sbjct: 710  QEQVQKAAQILAGYSLGQADLLRRAMGKKKKEILEAEFVPFQRGCRERGYSDAAIQAVWD 769

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +L  F+ Y FNK+H A Y ++SY TA++K +YP E+++A +T   D+ +K   +  + R+
Sbjct: 770  VLVPFSGYAFNKAHTAGYGLVSYWTAYLKANYPAEYMSALLTSVKDDKDKSAVYLNECRK 829

Query: 812  FNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFC 869
              IQ++PP VN    DF   G   + + L AI+ VG      ++    A   + S  DF 
Sbjct: 830  MGIQVLPPDVNESDADFTPHGSETVRFGLTAIRNVGGPVVESMIRTRKAKGKYTSFPDFL 889

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA- 928
             +V+S   N+R +ESL+ AGA D  G++R  L    + +      +++       ++F  
Sbjct: 890  EKVESVVCNKRTVESLIKAGAFDSLGHTRKGLSAQFEPMIDNVVGIKRKEAEGQFDLFET 949

Query: 929  -HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              ++ +F   +   +       V   +E+ +LG Y S HPL   + +L         +  
Sbjct: 950  VSDEPSFGLDVVFAE-DEWEKPVLLTHEREMLGLYVSSHPLHGIEHVLADKADCAVADLA 1008

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                G  + +  ++   Q+K T++G+     T  + A   +  FFP
Sbjct: 1009 ERPDGVTVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIDCMFFP 1054


>gi|224827306|ref|ZP_03700398.1| DNA polymerase III, alpha subunit [Lutiella nitroferrum 2002]
 gi|224600481|gb|EEG06672.1| DNA polymerase III, alpha subunit [Lutiella nitroferrum 2002]
          Length = 1147

 Score =  994 bits (2569), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1039 (37%), Positives = 573/1039 (55%), Gaps = 32/1039 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL++HS +S+ +G + L++ + +      PAI ++D  NLF  ++F +     G
Sbjct: 2    NPPRFVHLRLHSEFSVYDGIVRLDDAVKRAKQHGMPAIGMSDLMNLFGMVKFYKACRGNG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+     I   D+                ++L      GY RL +L+++  L +Q +
Sbjct: 62   IKPIVSVDALISNDDD----------RDKPSRLLLTAKNRAGYLRLCDLLTQAVLHNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +   WL+      LI L+G   G +  A       VAE+R   +  LF D  Y+ +
Sbjct: 112  GRAELKREWLENGDNSQLICLSGAHLGDVGMALANGQRDVAERRARYWAGLFPDNFYLEV 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR           Q + LA    LP+VAT+   F+  +D++AH+  + +A    +  K R
Sbjct: 172  QRLDNPQIEGVVQQTLWLAGETGLPVVATHPIQFMDPDDFKAHEARVCIAEGYTLGDKRR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P       Y  +  EM+  F D+PEALEN+VEIARRC+  +Q+    LP F   E   + 
Sbjct: 232  PKNFAECQYFLSTEEMIERFHDIPEALENSVEIARRCNITVQLGKNYLPDFPTPEGMTL- 290

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L + +  GLE RL         +      Y  RL  E + I +M F GYFLIVA
Sbjct: 291  ---DDYLVHLSKEGLETRLEKLYPDPEVRAAERPRYDARLKIECDTIVQMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N  PVGPGRGSGAGS+ A++L ITDIDPL ++LLFERFLNP+R+SMPDFD+D
Sbjct: 348  DFIVWAKNNGCPVGPGRGSGAGSLVAFSLGITDIDPLAYALLFERFLNPERVSMPDFDVD 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQD R  VI YV+ KYG E V+QI TFG++ AKA +RDVGR L +PY   D + KLIP 
Sbjct: 408  FCQDNRYRVIEYVRQKYGAEAVSQIATFGTMAAKAVVRDVGRVLDLPYMFCDGVSKLIPA 467

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P    SL  A+  +   +E    +  +  L E+++KLEGL R    HA G++I    ++
Sbjct: 468  APGKQYSLDDAVEMEPILKERLENEEELRELWELAKKLEGLTRGIGMHAGGVLIAPGKIT 527

Query: 541  QLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--D 597
               P+Y+    D +PV+  +   +E+ GL+KFDFLGL+ LT++  ++ ++         D
Sbjct: 528  DFCPVYQAAGDDAVPVSMLDKDDVEQIGLVKFDFLGLRNLTIIDLAVKYIKALDPAFDTD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+L+ F D   Y +L    T  +FQLES GM++ LE ++PD  EDIIA+++LYRPGP+ +
Sbjct: 588  LNLLEFTDPAAYQILQKANTTAVFQLESDGMKRLLEKLKPDRFEDIIAVLALYRPGPLGS 647

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  +  RK GK+++   HP +   L+ T GVI+YQEQVMQI+Q++ GY+L  AD+LRR
Sbjct: 648  GMVDDFILRKAGKQEVDYFHPDLTACLEPTYGVIVYQEQVMQISQIIGGYTLGGADMLRR 707

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM + + +   GA+  G    +A  +F+L+AKFA+YGFNKSH AAYAV+SYQ
Sbjct: 708  AMGKKKPEEMAEHRGKIAQGAAAKGYDPKLAEQLFDLMAKFAEYGFNKSHTAAYAVVSYQ 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNR 834
            TAW+K H+   F+AA+M+ E+DN +++K F  D+    ++ +PP VN     F  V    
Sbjct: 768  TAWLKAHHCAAFMAATMSSELDNTDQLKVFYDDSIANKLKFLPPDVNESFYRFVPVDRQH 827

Query: 835  IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L A+KG G     HI+    +  PF  L DFC R D + +N+R +ESL+ AGA D 
Sbjct: 828  IRYALGAVKGTGEAAVEHIVAVRQEGGPFTDLFDFCRRTDKRTVNKRTIESLIRAGAFDA 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R +L  ++    + A+    N       +F       +  + + +      +V+  
Sbjct: 888  IEPNRAKLFANVGLAMEAAEQEAANANQG--GLFDMFDADSAPTVEMVEVKPWPPAVQLA 945

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  +G+Y SGHP   Y+  +R            T R     +A  V   + K   +G 
Sbjct: 946  EEKLAIGYYLSGHPFSAYEKEVRGFIKTPLSRI--TPRKEPQLIAGFVTGLRTKVGNRGK 1003

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + ++   + + + E + F
Sbjct: 1004 -MAFIQLDDGSAKREVSVF 1021


>gi|154174535|ref|YP_001407866.1| DNA polymerase III subunit alpha [Campylobacter curvus 525.92]
 gi|112803372|gb|EAU00716.1| DNA polymerase III subunit alpha [Campylobacter curvus 525.92]
          Length = 1201

 Score =  994 bits (2569), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1059 (34%), Positives = 590/1059 (55%), Gaps = 47/1059 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL +H+ YSLL+GA  +  +   +      + AITD  N+F A++F +     GI+P
Sbjct: 3    DFTHLHLHTEYSLLDGANKIKELAHVLHERGDTSAAITDHGNMFGAIDFYKTMKKEGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG +  I   D+L     G         ++L+     GY+ L+ L S  Y+        
Sbjct: 63   LIGIEAYIHNADDL-----GDKSSKQRFHLILIAKNETGYKNLMYLSSMSYIEG-FYYYP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRA---------FFFNSSQVAEKRLLTFKKLFGD 180
            RI    L+E  +EG+I  +    G +            +     + A++  L +K++FGD
Sbjct: 117  RINKKILKE-HSEGIICSSACLQGEVSWHLNLSERNLKYGAKGYEKAKEVALEYKEIFGD 175

Query: 181  RLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ + RH   D+ R +  ++++A    + ++ATN++ +  +E  +AH+V M +A + +
Sbjct: 176  DFYLEIMRHGIGDQRRIDDDILRIAKETGIKVIATNDTHYTFKERADAHEVFMCIAMNKL 235

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
            +   +R R +  + ++K+  EM  +F D+PE +ENT EI ++C+  +++  P  P F   
Sbjct: 236  LDDPNRLRHSVHEFFVKSEDEMKRLFLDIPEVIENTKEIVQKCNLEIKLGNPTPPNFKFT 295

Query: 296  -----------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                        E +     K +      +   GLE RL           ++Y++RL+ E
Sbjct: 296  LECAAERGLNLPEPKNRYSFKNDTVFFEYECKKGLEERLK---FVPENLHEEYKKRLERE 352

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            + +I +M FSGY +IV DFI  AK   +PVGPGRGS AGS+ AY+L ITD+DP+ ++LLF
Sbjct: 353  IEIINKMNFSGYMMIVWDFINEAKSRGVPVGPGRGSAAGSLVAYSLKITDLDPIPYNLLF 412

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQ RR E+I YV  KYG   VA +ITFG L AK  +RDV R 
Sbjct: 413  ERFLNPERVSMPDIDVDFCQSRRGEIIDYVTQKYGKYNVAGVITFGKLLAKGVIRDVARV 472

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              MPY++ D + KLIP++    +   A   + + +E    +P   ++ + +  LEGL R+
Sbjct: 473  CDMPYAEADAMAKLIPDELGITLK-DAFEKEPKIKELIDKNPKAAKIWKFALDLEGLNRN 531

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRS--DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L    P++R   S  D  VTQ+++K++E   LIKFDFLGLKTLT++
Sbjct: 532  AGQHAAGVVISNEELWHKTPLFRQPNSPEDRYVTQYSLKYLEDVDLIKFDFLGLKTLTVI 591

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R    V    I  +D   Y ++ +   +GIFQ+E  GMR+    ++PDC E
Sbjct: 592  DNAIKLVKRRTGKDVIWEQIDKNDKPVYDMIQSGQAIGIFQIEGEGMRKLGTSLRPDCFE 651

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DI+A+++LYRPGP+++ +   +  RK+G+  I      ++P+L  T GVI+YQEQVMQI 
Sbjct: 652  DIVAMLALYRPGPMESGMLDDFVKRKHGEAAITYAFKELEPILAPTYGVIVYQEQVMQIV 711

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q + G+SL  AD++RRAMGKK  E + +QKE F+ GA K G +   + ++F+L+ KFA Y
Sbjct: 712  QKIGGFSLGGADLVRRAMGKKDPELLRQQKELFVEGAKKEGFNVQKSGDLFDLILKFAGY 771

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA +++QTA++K +YP EF+AA +T E  NV+KI ++  ++++  I ++ P
Sbjct: 772  GFNKSHSAAYAYVTFQTAFLKAYYPAEFMAALLTSEESNVDKIVRYIDESKRLKIDVLAP 831

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDS 874
            S+N    +F V    G + I + L AIKGVG     +I+        F    D  SR+D+
Sbjct: 832  SINKSMKEFSVVDNGGHDGIIFGLGAIKGVGGAAIENIIAERERGGEFKDFNDLVSRIDA 891

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
             K+N++V ESL+ AG  D FG++R  LL +++NI +  +   + R N  +++F  ++   
Sbjct: 892  FKVNKKVFESLIKAGCFDEFGHTRKMLLANIENIIEACKNAAQIRKNAAQSLFGEDESMN 951

Query: 935  SDKITLEKFS-VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
              KI  +      +     + EQ  +G Y SGHPLD Y+  + ++      E     +  
Sbjct: 952  DVKINFDPVDGEYDIKQILKFEQESVGIYLSGHPLDDYREKISQIKYTLSSEFENLPQSA 1011

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             I +   +     + T+ G ++G +   +     E   F
Sbjct: 1012 EILVVGKIEDFSTRITKSGKKMGTINVLDFHGNIEIAIF 1050


>gi|163841216|ref|YP_001625621.1| DNA polymerase III subunit alpha [Renibacterium salmoninarum ATCC
            33209]
 gi|162954692|gb|ABY24207.1| DNA polymerase III alpha subunit [Renibacterium salmoninarum ATCC
            33209]
          Length = 1176

 Score =  994 bits (2569), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1059 (34%), Positives = 554/1059 (52%), Gaps = 48/1059 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  L ++ +  A     ++A TD   +F A +F  KA  AGI+P
Sbjct: 7    SFVHLHNHTEYSMLDGAARLTDLFEHTAELGMNSLATTDHGFVFGAFDFWSKAKNAGIKP 66

Query: 70   IIGCQLDIDMQ----DNLKMTNQGKTPFP-----TVPSIVLLVSTAEGYQRLIELVSRMY 120
            IIG +  +       D  ++     +            + L   T +G   L  + S   
Sbjct: 67   IIGVEAYLTPGTAHNDRTRVKWGDGSGKDVAGAGAYTHMTLWSETTQGMHNLFRMSSLAS 126

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-G 179
            L        R+    LQ  G +GLI  TG  SG +         + A +    F+ +F  
Sbjct: 127  LEGYLY-KPRMDRDLLQTYG-KGLIASTGCPSGEVPTKLGLGLYKEAVQAASDFQDIFGK 184

Query: 180  DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               Y  L  H    +R  ++ +++LA    LPLVATN+  +   ED  AH  L+ V   +
Sbjct: 185  GNFYCELMDHGLDIERNVKADLLKLAKELNLPLVATNDLHYTHAEDASAHAALLCVQSGS 244

Query: 239  VVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             ++   R +   D  YLK+  EM  +F D P+A +NT+ IA RC       A  +PRF  
Sbjct: 245  TLADPKRFKFDADEFYLKSPLEMRELFRDFPDACDNTLLIAERCEVAFDTGASYMPRFPV 304

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E ++    E++    +   GL  R   G  A      D R++ +FE+ VI +M F GYF
Sbjct: 305  PEGEN----EQSWFVKEVEKGLHYRYPGGIPA------DVRKQAEFEVGVITQMGFPGYF 354

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPL+  L+FERFLNP+R+SMPD
Sbjct: 355  LVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLKHGLIFERFLNPERVSMPD 414

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DF   RR EVIRYV  KYG ERVA I+T+G+++AK AL+D  R L  PYS  +RL K
Sbjct: 415  FDVDFDDRRRGEVIRYVTEKYGDERVAMIVTYGTIKAKQALKDSSRVLGYPYSTGERLTK 474

Query: 478  LIPND---------PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
             +P D           H    +  ++    RE    DP   ++ + +  +EGL R    H
Sbjct: 475  AMPPDVMGKGMALTDVHNKEAKRYSEAEELRELIKTDPDSQKVFDTAIGIEGLKRQWGVH 534

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+++   PL  ++P+ R  +    +TQF+    E  GLIK DFLGL+ LT++  +++ 
Sbjct: 535  AAGVIMSSDPLIDIIPIMRREQDGQIITQFDYPTCEGLGLIKMDFLGLRNLTIISDAIEN 594

Query: 589  LA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            +   R   +DL  +  DD  +Y LL    TLG+FQL+   MR  L+ M+PD  EDI A++
Sbjct: 595  IKLNRDFDLDLEGLELDDVPSYELLARGDTLGVFQLDGGPMRSLLKLMKPDNFEDISAVL 654

Query: 648  SLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLID----PMLKETQGVIIYQEQVMQIAQL 701
            +LYRPGP+  ++   Y  RKN  ++I  IHP ++     +L  T G+I+YQEQVM  AQ 
Sbjct: 655  ALYRPGPMGVNSHTNYALRKNKLQEITPIHPELEAPLEDILGTTYGLIVYQEQVMAAAQK 714

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            L+G+SL +AD+LRRAMGKK K E+DKQ+  F +G   NG S+     ++++L  FADY F
Sbjct: 715  LAGFSLGQADILRRAMGKKKKSELDKQQADFFAGMKTNGYSQAAMDALWKVLESFADYAF 774

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NK+H AAY +ISY TA++K HY  E++AA +T   D+ +K+  +  + R+  I ++PP V
Sbjct: 775  NKAHTAAYGLISYWTAYLKEHYAAEYMAALLTSVGDDKDKLAIYLNECRRMGITVLPPDV 834

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRR 880
            N   V+F   D  I + + AI+ VG    + ++ A  +   F++  D+  +V +   N+R
Sbjct: 835  NESSVNFTPVDTDIRFGMGAIRNVGANVVQAMVGAREEKGAFENFSDYLLKVPAVVCNKR 894

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--- 937
             +ESL+ AGA D  G+ R  L+   +        +++N      ++FA      ++    
Sbjct: 895  TIESLIKAGAFDSLGHPRRALVAVHEEAIDSVVVLKRNEAVGQFDLFAGFSDEEAEPGFS 954

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---ATIRGNN 994
              +          +   E+ +LG Y S HPL   + +L +         +       G  
Sbjct: 955  TDVPDLPEWEKKDKLAFERDMLGLYVSDHPLRGLEGVLSQHAEHTISYLIGEDGLSDGAI 1014

Query: 995  IRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +A M+ S  ++     G+        +     E  FF
Sbjct: 1015 VTIAGMITSLSRRIAKASGNAYARAEIEDLGASMEVMFF 1053


>gi|297199041|ref|ZP_06916438.1| DNA polymerase III subunit alpha [Streptomyces sviceus ATCC 29083]
 gi|197716004|gb|EDY60038.1| DNA polymerase III subunit alpha [Streptomyces sviceus ATCC 29083]
          Length = 1179

 Score =  994 bits (2569), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/1070 (32%), Positives = 546/1070 (51%), Gaps = 53/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA++D  NL  A +F   A  
Sbjct: 1    MSKPP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHTAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +    + G   L +
Sbjct: 60   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWAVNSTGLHNLFK 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EG++  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SEGIVASTGCPSGELQTRLRLGQYDEALKAAADY 178

Query: 175  KKLF-GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  DR ++ L  H    +      ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIEIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVH- 288
             +     +S  DR R     +YLK+  EM ++ S     E   NT+ +A           
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLKSTDEMYAVDSSDAWQEGCANTLLVAEMVDTTGMFEA 298

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P+F   E       E    + +   G+E R   G        +D +++ D+E++VI
Sbjct: 299  KNLMPKFDIPEG----YTEVTWFKEEVRRGMERRFPGGV------PEDRQKQADYEMDVI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFL
Sbjct: 349  IQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  P
Sbjct: 409  NPERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y+  DRL K +P D     + L  I D S          R     +P V ++++ ++ +E
Sbjct: 469  YAMGDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRSMYENEPDVKKVIDTAKGVE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   +G+ +++  +P DD +T+ LL    TLG+FQ +   MR  L  MQPD
Sbjct: 589  TIMDDAIKMVKANKGIDLEMLALPLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRQMQPD 648

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI A+ +LYRPGP+     + Y  RKNG+++I  IH  ++  L+E    T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMNSHINYAERKNGRQEITPIHKELEEPLEEVLAVTYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  +E+ K    F +GA KNG S      ++++
Sbjct: 709  EQVQKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFTIFQAGAQKNGYSDEAIQALWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H+AAY ++SY TA++K +YP E++AA +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             I+++PP+VN    +F   GD+ I + L A++ VGT     I+ +  A   + S  D+  
Sbjct: 829  KIKVLPPNVNESEHNFAAQGDDVILFGLEAVRNVGTNVVESIIRSRKAKGKYASFPDYLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +V++   N+R  ESL+ AGA D  G++R  L    D++      V++       ++F   
Sbjct: 889  KVEAVACNKRTTESLIKAGAFDTMGHTRKGLTAHFDSMIDNVVAVKRKEAEGQFDLFGGM 948

Query: 931  KGTFSDKITLEK-----FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                S +              + +     E+ +LG Y S HPL   + +L      G  +
Sbjct: 949  GEADSSEPGFGLDVEFTTDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQ 1008

Query: 986  SV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1009 LTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|116670142|ref|YP_831075.1| DNA polymerase III subunit alpha [Arthrobacter sp. FB24]
 gi|116610251|gb|ABK02975.1| DNA polymerase III, alpha subunit [Arthrobacter sp. FB24]
          Length = 1185

 Score =  994 bits (2569), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1071 (34%), Positives = 552/1071 (51%), Gaps = 55/1071 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              + SFVHL  H+ YS+L+GA  L  + D+      PA+A TD   LF A +F +KA   
Sbjct: 3    SSNDSFVHLHTHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWRKATDK 62

Query: 66   GIQPIIGCQLDIDMQ------DNLKMTNQGKTPFP-----TVPSIVLLVSTAEGYQRLIE 114
            GI+PIIG +  +           ++   + +         +   + LL     G + L  
Sbjct: 63   GIKPIIGVEAYVTPGTARGDKSRVRWGEESQRKDDVSGGGSYTHMTLLSYNNVGMRNLFR 122

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
              S   L     +  R+    L    +EGLI  TG  SG +         + A +    F
Sbjct: 123  ASSIASLDSVFGKWPRLDRELLNTY-SEGLIATTGCPSGEVQTRLRLGQYREALEAAAEF 181

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  +  +  L  H    +R     +++LA    LPLVATN+  +  E D +AH+ L+
Sbjct: 182  RDIFGAENYFCELMDHGLDIERRVTGDLLRLAKDLNLPLVATNDLHYTHEHDAKAHEALL 241

Query: 233  AVAHSTVVSQKDRP-------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            A+   + + +                +YLK+  EM  +F D PEA +NT+ IA RC    
Sbjct: 242  AIQSGSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMRELFRDHPEACDNTLLIAERCEVSF 301

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
               A  +PRF   E +D    E + L  +   GL  R  QG   K       R++ D+EL
Sbjct: 302  NTGANYMPRFPCPEGED----ETSWLVKEVDKGLHYRYPQGIPDK------VRKQADYEL 351

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VI  M F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPL   L+FE
Sbjct: 352  EVITSMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLHHGLIFE 411

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNPDR+SMPDFD+DF   RR EVI YV  KYG ERVA I+T+G+++ K AL+D  R L
Sbjct: 412  RFLNPDRVSMPDFDVDFDDRRRSEVIDYVTRKYGDERVAMIVTYGTIKTKQALKDSSRVL 471

Query: 466  QMPYSQVDRLCKLIPND-PAHPVSL--------QAIADDSRFREARLADPSVDRLLEISQ 516
              P+S  + L K +P    A  + L        +  ++   FR+    DP   ++ E + 
Sbjct: 472  GYPFSMGETLTKALPPAVMAKDIPLADIQNKEAKRYSEAGDFRQLISTDPEAAKVFETAL 531

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             +EGL R    HAAG+++   P+  ++P+ R  +    +TQF+    E  GLIK DFLGL
Sbjct: 532  GIEGLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFLGL 591

Query: 577  KTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            + LT++  +L+ +   RG+ +DL  +  DD  +Y LL    TLG+FQL+   MR  L+ M
Sbjct: 592  RNLTIISDALENIKMNRGIDLDLETLELDDTASYELLARGDTLGVFQLDGGPMRSLLKLM 651

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVI 689
            +PD  EDI A+++LYRPGP+  +    Y  RKN  ++++ IHP ++     +L  T G+I
Sbjct: 652  KPDNFEDISAVLALYRPGPMGANAHTDYALRKNKIQEVIPIHPELEEPLSEILGGTYGLI 711

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVM +AQ L+GY+L +AD+LRRAMGKK K E+DKQ   F  G   NG S      +
Sbjct: 712  VYQEQVMAVAQKLAGYTLGQADILRRAMGKKKKSELDKQFAGFSQGMQDNGYSMAAVKTL 771

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +++L  F+DY FNK+H+AAY VISY TA++K HY  E++AA +T   D+ +K   +  + 
Sbjct: 772  WDILLPFSDYAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDKSAIYLNEC 831

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDF 868
            R+  I ++PP VN   ++F    N I + + AI+ VG      ++ A   +  + S +D+
Sbjct: 832  RRMGITVLPPDVNESALNFTPVGNDIRFGMGAIRNVGVNAVEAMVAAREKEGAYTSFKDY 891

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              +V +   N+R +ESL+ AGA D   + R  L    +        +++N      ++FA
Sbjct: 892  LMKVPAVVCNKRTIESLIKAGAFDSLNHHRRALAMIHEEAIDSVITLKRNEAIGQFDLFA 951

Query: 929  HEKGTFSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                  S+    I +          +   E+ +LG Y S HPL   + +L +   +    
Sbjct: 952  GFDEAESEASLSIEIPDLPEWEKKDKLSFERDMLGLYVSDHPLQGLEGLLSQHADQSITS 1011

Query: 986  SVAT---IRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +A      G  I +A M+ S  ++     G+        +     E  FF
Sbjct: 1012 IIAEDGPHDGAIITIAGMITSLSRRIAKASGNAYARAEIEDLGGSIEVMFF 1062


>gi|254382569|ref|ZP_04997927.1| DNA polymerase III subunit alpha [Streptomyces sp. Mg1]
 gi|194341472|gb|EDX22438.1| DNA polymerase III subunit alpha [Streptomyces sp. Mg1]
          Length = 1180

 Score =  994 bits (2569), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/1072 (31%), Positives = 540/1072 (50%), Gaps = 56/1072 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+P F HL VH+ YSLL+GA  L ++ +         IA++D  NL  A +F   A  
Sbjct: 1    MTKTP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHTAQK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            +G+ PIIG +  +  +                    +         +  + + G   L  
Sbjct: 60   SGVTPIIGIEAYVAPESRRNKRRIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y      +  R+    + +  +EGLI  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLTKWPRMDKETISQW-SEGLIASTGCPSGELQTRLRLGQFDEALKSASEY 178

Query: 175  KKLF-GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  DR ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYASEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVH- 288
             +     +S  DR R     +YLK+  EM +I S     E   NT  +A +         
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLKSTEEMYAIDSSDAWQEGCANTKLVADQIDTEGMFKF 298

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P+F   E       E +  R + + G+  R   G         D  ++ ++E++ I
Sbjct: 299  RNLMPKFDIPEG----HTEVSWFREETMRGMHRRYPGGI------PDDRLKQAEYEMDTI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
              M F GYFL+VADFI WAK   I VGPGRGS AGS+ AYA+ ITD+DPL   L+FERFL
Sbjct: 349  ISMGFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPLTHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G+++AK A++D  R L  P
Sbjct: 409  NPERVSMPDVDIDFDERRRVEVIRYVTEKYGQDKVAMIGTYGTIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y+  DRL K +P D     + L  I D            R     +P V ++++ ++ +E
Sbjct: 469  YAMGDRLTKAMPADVLGKGIPLSGILDPQHPRYGEAGEIRGMYENEPDVKKVIDTARGVE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++    ++  VP++      + +TQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSETITDHVPVWVRHTDQVTITQWDYPSCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   +G+ +DL  +P DD +T+ LL    TLG+FQ +   MR  L  M+PD
Sbjct: 589  TIMDDAVKMVKANKGIDIDLLALPLDDPKTFELLGRGDTLGVFQFDGGPMRSLLRLMKPD 648

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQ 692
              EDI A+ +LYRPGP+       Y  RKN +++I  IHP     ++ +L  T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMNSHTNYALRKNKQQEITPIHPELEGPLEEVLAVTYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F  GA K G S      ++++
Sbjct: 709  EQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVIFEGGAKKKGFSDQAIKALWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H+AAY ++SY TA++K ++P E++A  +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSAAYGLVSYWTAYLKANFPAEYMAGLLTSVKDDKDKSAIYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             I+++PP+VN    +F   GD+ I + L A++ VG      I++   A   + +  DF  
Sbjct: 829  GIKVLPPNVNESEPNFAAQGDDVILFGLTAVRNVGNNVVDSIIKTRKAKGKYSTFPDFLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--- 927
            +V++   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F   
Sbjct: 889  KVEAVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVAVKRKEAEGQFDLFGAM 948

Query: 928  ----AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                  ++  F   +          S     E+ +LG Y S HPL   + +L      G 
Sbjct: 949  GDEAGGDEPGFGLDVEFSDV-EWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKTDAGI 1007

Query: 984  EESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +        G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1008 SQLTGGEHSDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1059


>gi|87199787|ref|YP_497044.1| DNA polymerase III, alpha subunit [Novosphingobium aromaticivorans
            DSM 12444]
 gi|87135468|gb|ABD26210.1| DNA polymerase III, alpha subunit [Novosphingobium aromaticivorans
            DSM 12444]
          Length = 1215

 Score =  994 bits (2569), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/1066 (42%), Positives = 651/1066 (61%), Gaps = 40/1066 (3%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            ++  + +FV L++ SSY++L+GA+    I    A    PA AITD N L+ ++ +++   
Sbjct: 19   HMPHA-AFVPLRIFSSYTMLDGAIDPKAIAKTAAERGFPAAAITDRNGLYGSVAYAKACK 77

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
              G+QP+IG  L +   +            PT+  + L    A GY  L  LVSR +L  
Sbjct: 78   DMGVQPVIGTMLAVARPERDGAATGFGPAAPTIDWLALYAQDARGYDNLCHLVSRAHLDR 137

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
              + +  + L+ L    T+GLI LT  S G + +         AE  +    +LF +RLY
Sbjct: 138  PLEFAPHVVLADLV-GHTDGLICLTAASEGALAQLLAGGQQSAAEAYVDRLLELFPERLY 196

Query: 184  VNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + + +R+   +   E+ ++ LAY  +LPLVATN + F     Y+AHD ++ +A ST V  
Sbjct: 197  IEIARRNDAVEEASETALIDLAYARDLPLVATNPACFAERTFYDAHDAMLCIASSTHVDS 256

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             DRPR + + ++K  + M  +F DLPEAL NT+ +A+RC+ +     PILP     +  +
Sbjct: 257  ADRPRSSKEWWIKPAAVMEELFKDLPEALANTLVVAQRCAVMPPKRKPILPSLAGDQEGE 316

Query: 303  IQKEEEN-----------ELRNKAVAGLEVRLAQGAIAKGYHAQ--------------DY 337
             +   E+                  A L   L  G  A+   A               DY
Sbjct: 317  ARMCAEDSRKGLVLRLEPYYPESTHAELARVLCLGPDAEPVAADHPQLVEAGVWEEVLDY 376

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            R+RL+FE+ +I RM F GYFLIVADFI+WAK++ IPVGPGRGSGAGS+ A+ALTITD+DP
Sbjct: 377  RKRLEFEIAIINRMGFGGYFLIVADFIKWAKEHGIPVGPGRGSGAGSLVAWALTITDLDP 436

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
            ++  LLFERFLNP+R+SMPDFDIDFC+ RR EVIRYVQ KYG + VAQIITFG L+A+A 
Sbjct: 437  IKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQRKYGEDHVAQIITFGKLKARAV 496

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQ 516
            LRD GR LQM Y Q DRLCK++PN P  P  L +A+   +  +     DP V RL++++ 
Sbjct: 497  LRDTGRILQMSYGQTDRLCKMVPNHPTDPWPLPRALNGVAELKREYDRDPEVKRLIDLAM 556

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            +LEGL R++STHAAG+VIGDRPL+QLVP+YRD RSD+PVTQF+MK +E AGL+KFDFLGL
Sbjct: 557  QLEGLPRNSSTHAAGVVIGDRPLAQLVPLYRDPRSDMPVTQFDMKHVEDAGLVKFDFLGL 616

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            KTL++L+K++D + +R +++DLS +P+DD +TY LL +  T+G+FQLES GMR+ L  ++
Sbjct: 617  KTLSVLRKAVDLMKKRSIEIDLSALPWDDEQTYKLLQSGDTVGVFQLESEGMRRTLAAVK 676

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            P    DIIALVSLYRPGP+DNI ++  RKNG E I   H  +  +L ET G+ +YQEQVM
Sbjct: 677  PTNFGDIIALVSLYRPGPMDNIPLFGRRKNGLEAIEYPHDKLAGILSETYGIFVYQEQVM 736

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAK 755
            Q AQ+L+GYSL +AD+LRRAMGKK++ EMD Q++RF+ G  + +GI    A  +F+L+ K
Sbjct: 737  QAAQILAGYSLGDADLLRRAMGKKVQAEMDAQRQRFVDGCKEVSGIPAAKANELFDLIDK 796

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA YGFNKSHAAAYA+++YQTAW+KTHYP EF AA+M  +M   EK+  F  D R+  + 
Sbjct: 797  FAGYGFNKSHAAAYALLAYQTAWLKTHYPHEFYAAAMCFDMHQSEKLSVFVDDMRRNGVA 856

Query: 816  IMPPSVNTPCVDFKVGD----NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
            +  P +N    +F V        + Y+LA ++ VG      I+E   A+ PF SL+D   
Sbjct: 857  LAGPDINHSEAEFTVERTHDGYAVRYALAGLRNVGEKAMEQIVEEREANGPFASLDDLFR 916

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            R+ +  +NRR LE+L   GALDC   +R Q++ + + +   A+   ++RT+    +F  +
Sbjct: 917  RIPAGSMNRRQLEALAAGGALDCLEPNRAQIIANAELLMAVAEEASRSRTSGQGGLFGGD 976

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT- 989
                +    L      + + +   E+   GFYF+ HP++ Y+ +    G + Y   + + 
Sbjct: 977  -DHATPATRLSDTKPWSRADQMAAERENFGFYFAAHPVEEYRAVASANGARSYGSLMTSS 1035

Query: 990  -IRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               G      +AA+V + Q++KT+KG       FS+ +  + A+ F
Sbjct: 1036 GEPGGRSGAVMAALVENVQKRKTKKGKDFVMADFSDSSGLFSASCF 1081


>gi|319760423|ref|YP_004124361.1| DNA polymerase III subunit alpha [Candidatus Blochmannia vafer str.
            BVAF]
 gi|318039137|gb|ADV33687.1| DNA polymerase III subunit alpha [Candidatus Blochmannia vafer str.
            BVAF]
          Length = 1169

 Score =  994 bits (2569), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1050 (38%), Positives = 612/1050 (58%), Gaps = 42/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+F+HL   S YS+++    +N +L+K      PA+A+TD  NLF  ++F   +   GI+
Sbjct: 4    PNFIHLHTRSDYSMIDSIAKVNELLEKAKLFNMPALALTDFTNLFGLIKFHNYSYELGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G    I             +       I  LV  ++GYQ LI+L+S+ Y        
Sbjct: 64   PITGSDFCIQDSS---------SDNIDFHEITCLVINSQGYQNLIQLISKAYKYKSNTSF 114

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I +SWLQE   +GLI+L+GG +G I +    +     ++RL  +   F +R Y+ L R
Sbjct: 115  PVIKMSWLQEY-NKGLILLSGGRNGDIGQYLLKDKKNKIDERLSFYNNYFPNRYYIELIR 173

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R Y+       ++L+    LP+VATN+  F++E+D+ AH++ +A+    VV +  +  
Sbjct: 174  TGREYEELYLQLAIELSKIKGLPVVATNDIRFINEKDFLAHEIRVAIHDGVVVDKIQQLN 233

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   ++KN  +M  +F D+PE+L NTVEIA+RC+ I+ ++   LP+F           
Sbjct: 234  KYSKQQFMKNAQDMCLLFKDVPESLTNTVEIAQRCNCIINLNGSFLPKFPTGSI-----S 288

Query: 307  EENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             EN L   A  GLE RL         +  + + Y +RL  EL+VI +M F GYFLIV +F
Sbjct: 289  IENFLIKFAQKGLEKRLLHLFPDDKKRYINRKPYDERLSHELHVIIQMGFPGYFLIVMEF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK N IPVGPGRGSGA S+ AY LTIT++DP++F LLFERFLNP+R+SMPD DIDFC
Sbjct: 349  IQWAKNNKIPVGPGRGSGASSLVAYVLTITELDPIKFDLLFERFLNPERISMPDLDIDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + RD VI +V   YG   VAQIITFG++ AKA +RDVGRAL  PY+ ++ + KLIP+  
Sbjct: 409  MEHRDLVIDHVVKTYGSCAVAQIITFGTMAAKAVIRDVGRALGYPYTFINSIAKLIPSKI 468

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +S Q+ A DS+ +     +  + +L+++S +LEGL R+ S HA G+VI    ++   
Sbjct: 469  GITLS-QSYATDSQLKLMYDNNEEIKKLIDLSLQLEGLIRNVSKHAGGVVIAPSKITDFS 527

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----RGVKVDL 598
            P+Y D     P+TQF+   IE+ GLIKFDFLGL+TLT++ +SL  +           +D+
Sbjct: 528  PLYYDSDHTHPMTQFDKNDIERIGLIKFDFLGLRTLTVIDRSLKMINNLRLKSCLSIIDI 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + I  +D E++ +L T  T GIFQLES G++  ++ ++PDC ED+IAL++L+RPGP+ + 
Sbjct: 588  NQISLNDQESFDVLQTSKTTGIFQLESRGIKALIKRLKPDCFEDLIALIALFRPGPLQSG 647

Query: 659  V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + NRK+G E I        H  + P+LK T G+I+YQEQVMQIAQ+L+GY+  +AD
Sbjct: 648  MVDNFINRKHGYEAIYYPDSQWEHKSLRPVLKSTYGIILYQEQVMQIAQVLAGYTPGKAD 707

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRA+GKK  E+M KQ+  FI GA +NGI K ++  IF+L+ KFA YGFNKSH+ AYA+
Sbjct: 708  ILRRAIGKKKPEDMAKQRSIFIDGAVRNGIDKILSKKIFDLMEKFAGYGFNKSHSVAYAL 767

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTHYP EF+A+++  +MDN+ +      + ++  ++I PP +N     F V 
Sbjct: 768  LSYQTLWLKTHYPAEFMASTLNSDMDNLNRTINLLNECKRIGLKIHPPDINNSQYYFCVN 827

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              +   Y + AIKG+G T+   I+++      F  L DFC R+++ K+N R++E L+F+G
Sbjct: 828  KKKEIVYGIGAIKGIGKTSIDEIVKSRNCHGEFKGLFDFCVRIENLKINFRMVEKLIFSG 887

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS----- 944
            A D F   R +LL +L +    A      + +K  ++F     T   +  +   S     
Sbjct: 888  AFDSFKTHRSKLLSTLKDTINNATQYINKKNSKQTDMFETYINTQVTEYNVLNMSCMTST 947

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRK--MGIKGYEESVATIRGNNIRLAAMVV 1002
              N+ +  E E+  +G Y + HP+D Y   + +  + I   ++         + +  ++ 
Sbjct: 948  KWNNQILLEKEKETVGLYLTNHPVDQYIDEIEQYILNINKIKDVFRKKNNEMVCIFGLLS 1007

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            S + K ++KG+ I +    +   + E   F
Sbjct: 1008 SVRIKLSKKGNYILFGILEDKDDQVEIVVF 1037


>gi|291296502|ref|YP_003507900.1| DNA polymerase III subunit alpha [Meiothermus ruber DSM 1279]
 gi|290471461|gb|ADD28880.1| DNA polymerase III, alpha subunit [Meiothermus ruber DSM 1279]
          Length = 1257

 Score =  994 bits (2569), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/1096 (36%), Positives = 584/1096 (53%), Gaps = 87/1096 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAAD--QQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            F HL  H+ +SLL+GA  L ++L  +     ++P +A+TD  N+F A++F + A   G++
Sbjct: 22   FAHLHQHTQFSLLDGAARLKDLLKWVKQVSPEEPMLAMTDHGNMFGAVQFYKYATELGVK 81

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG +  +  +       QGK        + LL    EGYQ L  L SR YL       
Sbjct: 82   PIIGYEAYVAAESRFDR-KQGKGLDGGYFHLTLLAQNMEGYQNLSRLASRAYLEG-FYGK 139

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
             RI    L+E    G+I L+G     I +       + AEKRL  +  +F  +R ++ +Q
Sbjct: 140  PRIDREILRE-HNAGIIALSGCLGAEIPQFILQERFEDAEKRLQEYLAIFGPERYFIEIQ 198

Query: 188  RHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++++ ++V+ + A  + L LVATN+  ++ ++D EAH VL+AV         +R 
Sbjct: 199  NHGLAEQHKVNRVLKEFADKYGLGLVATNDGHYVKKDDAEAHAVLLAVQSKATWDDPNRW 258

Query: 247  RVTPDHYL-KNRSEMVSIFSD--------LPEALENTVEIARRCSFILQVHA--PILPRF 295
            +   D +  K+  EM   F D        + E  +N+V I R C   L        +P++
Sbjct: 259  KFPCDEFYVKSPQEMRQTFEDERNLWGSRMDELFDNSVNIGRMCEVELVPKKVQYRIPKY 318

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA--------------------- 334
               E     + E    R     GL  R       + Y                       
Sbjct: 319  PLPEG----RTEVVYFRELTFNGLLKRYPDRVTPELYREFLRKLGRPVPHGDGEVLALEL 374

Query: 335  -------------QDYRQ-----------RLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                          + R+           R  +EL V+ RM F GY LIV+DFI WAK N
Sbjct: 375  ARIEDLEATRAHLPELREGIQWDGWAILSRAIYELTVVERMGFPGYLLIVSDFINWAKNN 434

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I VGPGRGS AGS+  YA  IT+IDPL ++LLFERFLNP R+SMPD D DF   RR EV
Sbjct: 435  GISVGPGRGSAAGSLVTYATRITNIDPLEYNLLFERFLNPARVSMPDIDTDFSDVRRGEV 494

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL- 489
            I YV+ +YG E VAQI TFG+L +KAA++D  R   +P  + D L KLIP     P+ L 
Sbjct: 495  IEYVRQRYGDEMVAQIGTFGTLASKAAIKDAARVFGLPVKKADELAKLIPVTFGKPMPLD 554

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +AI      R     DP V R+LE++QKLEGL R +S HAAG+VI D PL   +P+ R  
Sbjct: 555  KAIETIPDLRAEMEKDPLVKRVLEVAQKLEGLSRQSSVHAAGVVISDVPLRDYIPLMRAG 614

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
             +   VTQ++M  +E  G +K DFLGL+TL+ L +    + + +GV++D   +P DD +T
Sbjct: 615  DTGAKVTQYDMGSVEALGFLKMDFLGLRTLSFLDECKRIIKESKGVELDYDNLPIDDAKT 674

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL    T G+FQL+S+GM  A+ G++P  I+DIIAL +LYRPGP++NI  Y  R +G+
Sbjct: 675  FELLGRGETKGVFQLDSAGMTSAVRGLKPRRIQDIIALGALYRPGPMENIPTYIRRHHGR 734

Query: 669  EKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            E++           I P+L+ET G+ +YQEQ+MQIA  ++GYSL EAD+LRRAMGKK  E
Sbjct: 735  EEVSYPQFPNAEKFIRPILEETYGIPVYQEQIMQIATAVAGYSLGEADLLRRAMGKKKME 794

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM KQ+ +F  GA+KNGI    A  +F+LL  FA+YGFNKSHAAAYA+++YQTA++K H+
Sbjct: 795  EMVKQRAQFKEGAAKNGIPAEEADRLFDLLEAFANYGFNKSHAAAYAILTYQTAYVKAHF 854

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF AA +T+E  + +K+ ++ + AR   ++++PP +N     F+  +  + + L+A+K
Sbjct: 855  PVEFFAAVLTVERHDSDKVAEYIRAARTAGVEVLPPDINQSGFSFRALEKSVLFGLSAVK 914

Query: 844  GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG T    I+ E     P+ SL DF  R+D    N+RV+ESL+ AGA D FG  R  +L
Sbjct: 915  NVGETPTELILRERERGGPYKSLPDFLRRLDGTVANKRVVESLIKAGAFDAFGP-RGPML 973

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             +LD++ K+AQ   +   +    +F         +  +      ++  +   E+  LG Y
Sbjct: 974  AALDDLLKWAQAEREQAQSGMMGLFGESL-----EPVIPAVPQLDAITQLRMEKEALGIY 1028

Query: 963  FSGHPLDVYKPILRKMGIK------GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             +GHPL  Y+ +              + E         + LA MV    +K T+ G  + 
Sbjct: 1029 VTGHPLSRYQGLREAASCTIEELPQAFAELKGNRNRARLLLAGMVEGIVRKPTKSGGMLV 1088

Query: 1017 WVTFSEPAKEYEANFF 1032
              T ++     E   F
Sbjct: 1089 RFTLADETGAVEVVAF 1104


>gi|148555255|ref|YP_001262837.1| DNA polymerase III subunit alpha [Sphingomonas wittichii RW1]
 gi|148500445|gb|ABQ68699.1| DNA polymerase III, alpha subunit [Sphingomonas wittichii RW1]
          Length = 1155

 Score =  994 bits (2569), Expect = 0.0,   Method: Composition-based stats.
 Identities = 469/1035 (45%), Positives = 625/1035 (60%), Gaps = 28/1035 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L++ S+Y++LEGA+    I         PA A+TD N L++A+ FS  A   G+QP
Sbjct: 5    SFVPLRIFSAYTMLEGAIDPKAIAKHAKKLGFPAAALTDRNGLYAAMAFSDGAKKEGVQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG  L            +       +  + L      GY  L  LVS  +L     +  
Sbjct: 65   VIGTML---------AIRRPGIDQLIIDWLALYAQDMTGYDNLCALVSAAHLERPVHEDA 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + LS L E  T+GLI LT G  G + R      +  A       + LF  RLYV L R 
Sbjct: 116  HVPLSAL-EGRTDGLIALTAGGEGALTRLLAAEQAGAAASYADKLEALFPGRLYVELARR 174

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E  ++ LAY   LPLVATN + F   E + AHD ++ +A S+ +   +RPR 
Sbjct: 175  GNADEEAAEEALIDLAYARNLPLVATNPACFAEPEFHAAHDAMLCIASSSYIDTAERPRS 234

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +PD ++K  +EM  +F D+PEAL NT+ +A+RC+       PILP          ++ E 
Sbjct: 235  SPDLWMKPAAEMAKLFEDIPEALANTLVVAQRCAVAAPYRKPILPSLAGD-----REGEA 289

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR  A  GLE+RL +  +      Q Y  RL FE  +I +M F GYFLIVADFI+WAK
Sbjct: 290  EALRRDAREGLEMRLEKLGVTDAEQRQAYFDRLAFETEIIIKMGFPGYFLIVADFIKWAK 349

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             ++IPVGPGRGSGAGSV A+ALTITD+DPLR  LLFERFLNP+R+SMPDFDIDFC+ RR 
Sbjct: 350  DHDIPVGPGRGSGAGSVVAWALTITDLDPLRLGLLFERFLNPERVSMPDFDIDFCETRRG 409

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVIRYVQ KYG ++VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P  P +
Sbjct: 410  EVIRYVQEKYGRDQVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWT 469

Query: 489  LQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L  A+            D  V RLL+++ KLEGL RH+STHAAG+VIGDR L  LVP+YR
Sbjct: 470  LDRALNGVPELAAEYKGDIEVRRLLDLAMKLEGLPRHSSTHAAGVVIGDRRLDALVPLYR 529

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++ FL QRG+ VDL  +P+DD E
Sbjct: 530  DPRSDMPVTQFDMKFVEGAGLVKFDFLGLKTLSVLQKAVQFLNQRGIAVDLDSLPWDDPE 589

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             Y LL    T+G+FQLES GMR+ L  ++P C EDIIALVSLYRPGP+DNI  +  RKNG
Sbjct: 590  VYALLQRGDTVGVFQLESEGMRRTLAAVRPTCFEDIIALVSLYRPGPMDNIPTFGARKNG 649

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E+I   HPL++ +LKET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKKIK EMD 
Sbjct: 650  REEIEYPHPLLEGILKETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKIKAEMDA 709

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+ RF+ G + N I+   A  +F+L+ KFA YGFNKSHAAAYA+++Y TAW+K H+  EF
Sbjct: 710  QRSRFVEGCAANDIAAAKANELFDLIDKFAGYGFNKSHAAAYALVAYHTAWLKAHHKAEF 769

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI----YYSLAAIK 843
             AASM  +M   +K+  F  D R+  IQ + P +N    +F V          Y+L A+K
Sbjct: 770  YAASMCYDMAQTDKLAIFIDDMRRMGIQCLGPCINHSEAEFAVEQQDEELFVRYALGALK 829

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      ++EA  A  PF SLEDF  R+D ++LNRR LESL   GA D     R  + 
Sbjct: 830  GVGEKAMEQLVEARKAKGPFGSLEDFADRIDPRQLNRRQLESLAGGGAFDEIETERAGIF 889

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             S + I  +A    + R +    +F       +  I +++      + R   E+   GFY
Sbjct: 890  ASAELILAHASSAAEQRESGQGGLFGDSPAALAP-IRIDRGLHWTLADRMAAEKESFGFY 948

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATI---RGNNI--RLAAMVVSKQQKKTRKGSRIGW 1017
            FS HP D  + +    G + +    A      G  +   ++A++   + + + KG R   
Sbjct: 949  FSSHPTDQVRHLAEANGARSFAALCALPAPVDGGRVNSVMSALIEDARWRTSAKGKRYMM 1008

Query: 1018 VTFSEPAKEYEANFF 1032
             T S+ + ++ A  F
Sbjct: 1009 ATCSDSSGQFIATCF 1023


>gi|86153288|ref|ZP_01071492.1| DNA polymerase III, alpha subunit subfamily, putative [Campylobacter
            jejuni subsp. jejuni HB93-13]
 gi|121613428|ref|YP_001000414.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni
            81-176]
 gi|85843014|gb|EAQ60225.1| DNA polymerase III, alpha subunit subfamily, putative [Campylobacter
            jejuni subsp. jejuni HB93-13]
 gi|87249433|gb|EAQ72393.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni
            81-176]
          Length = 1200

 Score =  993 bits (2568), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1058 (36%), Positives = 594/1058 (56%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++            F     + A++  L +KK+F D
Sbjct: 118  INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
            ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237  LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLDLNLGNPTPPNFKFT 296

Query: 296  --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                K+ + I  EE  E                GLE RL     +K    ++Y+QRL+ E
Sbjct: 297  REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLKFIDESKH---EEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +   A   + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDA-AYEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R    +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    K        +   E+ +LG Y SGHPLD +   +  +      +  +      
Sbjct: 953  VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|148926683|ref|ZP_01810364.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
            CG8486]
 gi|145845202|gb|EDK22297.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
            CG8486]
          Length = 1200

 Score =  993 bits (2568), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1058 (36%), Positives = 594/1058 (56%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++            F     + A++  L +KK+F D
Sbjct: 118  INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
            ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237  LNDPDRIRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 296  --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                K+ + I  EE  E                GLE RL     +K    ++Y+QRL+ E
Sbjct: 297  REYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLEERLKFIDESKH---EEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +   A   + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDA-AYEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R    +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKNIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRVKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    K        + E E+ +LG Y SGHPLD +   +  +      E         
Sbjct: 953  VQVNFTPKNEEFEVMEKLEYEKEILGIYVSGHPLDRFYEQINAIDYVKSLEFEGLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|226307018|ref|YP_002766978.1| DNA polymerase III alpha subunit [Rhodococcus erythropolis PR4]
 gi|226186135|dbj|BAH34239.1| DNA polymerase III alpha subunit [Rhodococcus erythropolis PR4]
          Length = 1202

 Score =  993 bits (2567), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/1066 (32%), Positives = 552/1066 (51%), Gaps = 51/1066 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL  H+ YS+L+GA  +  + ++ A  +  A+ +TD  N++ A +F  +A +AGI
Sbjct: 26   ADSFVHLHNHTEYSMLDGAAKVGAMFEEAARLEMTAVGMTDHGNMYGASQFYNEAKSAGI 85

Query: 68   QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIG +  I  +                    +       + ++   A G + L +L S
Sbjct: 86   KPIIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSS 145

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +  Q  +  R+    L     EG+I  TG  SG I         + A +    ++++
Sbjct: 146  LASIEGQLGKWPRMD-EELIAAHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI 204

Query: 178  F-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            +  D  ++ L  H    +R     ++ +     +P +ATN+  +++++  E H+ L+ + 
Sbjct: 205  WGPDNFFLELMDHGLSIERRVREGLLDIGKQLGIPPLATNDCHYVTKDAAENHEALLCIQ 264

Query: 236  HSTVVSQKDRPRVTPD-HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVH--API 291
                +S   R +   D +YLK+ +EM +I+  ++P A +NTV I  R      V      
Sbjct: 265  TGKTLSDPTRFKFDGDGYYLKSAAEMRAIWDNEVPGACDNTVAIGERVQSYEDVWAFHDR 324

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +P F   E       ++  LR + + GL+ R   G        Q+Y  R D+E+ VI  M
Sbjct: 325  MPIFPVPEG----HTQQTFLRAEVMRGLDRRFPSGP------PQEYLARADYEIGVINEM 374

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFL+V D I  AK   I VGPGRGS AGS+ AYA+ IT+IDP+ + LLFERFLNP+
Sbjct: 375  GFPAYFLVVGDLINHAKDVGIRVGPGRGSAAGSLVAYAMGITNIDPIPYGLLFERFLNPE 434

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPY 469
            R+SMPD DIDF   RR E++RY  +K+G+++VAQ+ITFG+++ KAA++D  R    +  +
Sbjct: 435  RVSMPDIDIDFDDRRRGEMVRYATDKWGNDKVAQVITFGTIKTKAAIKDSARVQFGKPGF 494

Query: 470  SQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEG 520
            +  D++ K +P    A  +S+  I D            R    + P V ++ + +  LEG
Sbjct: 495  AIADQITKALPPPIMAKDISVSGITDPKHERYKEAVEVRALIDSSPDVAKIYKTAVGLEG 554

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R+A  HA  +++   PL+  +P+++  +    +T ++    E  GL+K DFLGL+ LT
Sbjct: 555  LIRNAGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLT 614

Query: 581  LLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  +L+ +   RG+ +DL  +P DD  TY LL    TLG+FQL+  GMR+ L+ MQP  
Sbjct: 615  VIGDTLENIKANRGIDLDLDTLPMDDAATYELLARGDTLGVFQLDGGGMRELLKLMQPTG 674

Query: 640  IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQE 693
              DI+A ++LYRPGP+  D  + Y  RKN  E +  IHP ++     +L ET G+IIYQE
Sbjct: 675  FGDIVAALALYRPGPMGVDAHISYAKRKNALEDVKPIHPELEEPLAEILSETYGLIIYQE 734

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            Q+MQ+AQ ++GY+L +AD+LRRAMGKK   E++K    F  G   N  S+     +++ +
Sbjct: 735  QIMQLAQKVAGYTLGQADLLRRAMGKKKLSELEKAYAGFRQGMLDNNFSEAAIKALWDTV 794

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNKSH+A Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  
Sbjct: 795  LPFAGYAFNKSHSAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKSAIYLADCRKLG 854

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV 872
            I ++PP VN   VDF    + I + + +++ VG      I++A  +K  F    D+  ++
Sbjct: 855  ITVLPPDVNESRVDFATVGDDIRFGMGSVRNVGANVVASIIKARTEKSKFTDFSDYLGKI 914

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D+   N++V ESL+ AGA D  G+ R  L+    +        +K       ++F   + 
Sbjct: 915  DAMACNKKVTESLIKAGAFDSLGHPRKGLMLVHADAIDSVMSTKKAEAIGQFDLFGGAEA 974

Query: 933  TFSDKITLE---KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA- 988
              S     +        +S  R   E+ +LG Y SGHPL+  + ILR+         +  
Sbjct: 975  DESITSVFDVKIPEEEWDSKHRLALEREMLGLYVSGHPLNGVEHILRQQSDTSIAAILEG 1034

Query: 989  -TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                G  + L  ++ S  ++  + G     V   +     E  FFP
Sbjct: 1035 GVQDGAQVTLGGIIASVDRRVNKNGLTWCIVQLEDLVGGIEVLFFP 1080


>gi|119717274|ref|YP_924239.1| DNA polymerase III subunit alpha [Nocardioides sp. JS614]
 gi|119537935|gb|ABL82552.1| DNA polymerase III, alpha subunit [Nocardioides sp. JS614]
          Length = 1183

 Score =  993 bits (2567), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1066 (35%), Positives = 567/1066 (53%), Gaps = 53/1066 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA  L+ +  ++A  Q PAIA+TD  NL  A +F  KA   G++P
Sbjct: 8    SFVHLHVHTEYSMLDGASLLDGLFSRVADLQMPAIAMTDHGNLHGAFDFYSKARKHGVKP 67

Query: 70   IIGCQLDIDM---QDNLKMTNQGKTPFPT-----------VPSIVLLVSTAEGYQRLIEL 115
            IIG +  I     +   +    GK                   + +     EG   L  L
Sbjct: 68   IIGIEAYITPGTGRGERRRVRWGKGDAAEEGGDDVAGGGAYTHMTMWAENTEGMHNLFRL 127

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S   L        R+    LQ+  ++G+I+ TG  SG I           A +     +
Sbjct: 128  SSLSSLEGYFY-KPRMDREILQQ-HSKGIIVSTGCPSGAIQTRLRLGQWDEAVREAGELQ 185

Query: 176  KLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +F  + +++ L  H    ++     +++L     +P +ATN+S + + +D +AHD L+ 
Sbjct: 186  DIFGRENVFLELMDHGISIEKRVRDDLLRLGRQLGIPPLATNDSHYNNPDDADAHDALIC 245

Query: 234  VAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAP 290
            VA    +S  +R +     +Y+K+ +EM  ++   DL EA +NT+ IA RC         
Sbjct: 246  VASGKRLSDTNRLKFDGGGYYIKSPAEMRQLWTQHDLVEACDNTLAIAERCEVEFVESTG 305

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                ++ +      + E++  R +   G+E R     +      Q+ + R++ EL +I++
Sbjct: 306  ---GYMARADVPAGETEDSWFRKEVWRGIEARYPGDRL-----TQEVKDRVEMELAIISQ 357

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              + GY+L+VADFIQW+K+N I VGPGRGSGAGS+ AYAL+ITD+ PL   L FERFLNP
Sbjct: 358  KGYCGYYLVVADFIQWSKRNGIRVGPGRGSGAGSIAAYALSITDLCPLEHGLFFERFLNP 417

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R SMPDFDIDF   RR EVI+YV  KYG +RVAQI TFG L+AKAA++D  R L   ++
Sbjct: 418  ERPSMPDFDIDFDDHRRGEVIKYVTEKYGADRVAQIATFGRLKAKAAIKDAARVLDFGFA 477

Query: 471  QVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGL 521
              DR+ K +P D     V+L+ I D           FR    +DP V R+ + +  LEG 
Sbjct: 478  ISDRITKALPADVMGKGVALKDIFDPGHKRYGEGGEFRSLHDSDPDVRRIYDTAVGLEGQ 537

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R+   HAAG+++   PL  +VP+    +    +TQF+    E  GL+K DFLGL  L +
Sbjct: 538  IRNWGVHAAGVIMSSEPLINVVPIMARPQDGAIITQFDYPMCESLGLVKMDFLGLSNLHI 597

Query: 582  LQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            L  ++  + A RG +V L  +PFDD  TY L+    TLG+FQL+  GMR  L  MQPD  
Sbjct: 598  LDDAVANIEANRGEQVVLEELPFDDRATYELMGRGDTLGVFQLDGGGMRALLRSMQPDQF 657

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQEQ 694
             DI A+ +LYRPGP+  D+   Y  RKNG+E I  IHP +    +P+L ET G+I+YQEQ
Sbjct: 658  ADITAVSALYRPGPMGADSHNKYARRKNGREPIEPIHPALAEALEPVLGETYGLIVYQEQ 717

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VM IAQ+L+G++L  AD LRRAMGKK KEE+DKQ   F SG  + G  +     ++ +L 
Sbjct: 718  VMAIAQVLAGFTLGAADNLRRAMGKKKKEELDKQYAGFQSGMLERGFPQAAIDTLWAILL 777

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+DY FNKSH+AAY VI+Y TA++K +YP E++AA +T   D+ +K+  +  + R+  I
Sbjct: 778  PFSDYAFNKSHSAAYGVITYWTAYLKANYPAEYMAALLTSAKDDKDKLAIYLNECRRMKI 837

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873
            Q++PP VN    +F    N I + L A++ VG+     I+ A  +   ++   DF S+V 
Sbjct: 838  QVLPPDVNESAHNFTPVGNDIRFGLTAVRNVGSNVVDGIVAAREEKGRYEDFNDFLSKVP 897

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            ++  N+RV ESL+ AGA D   + R  L    +        +++      +++F      
Sbjct: 898  AQVCNKRVFESLILAGAFDDMKHKRRALHLKHEEAVDRYVGLKRE-DEGQDSLFGGSGSD 956

Query: 934  ---FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--- 987
               F   I L      +       E+ +LG Y S HPL   + +L         + +   
Sbjct: 957  DVVFDVSIALPDVDEWDKMTLLSREREMLGLYVSDHPLLGLEHVLANSSDCSIGQLMLDE 1016

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                G+++ ++ +V S Q+K T++G     VT  +     +   FP
Sbjct: 1017 DRPDGSSVTISGLVTSVQRKITKRGDAWAMVTVEDLDGAIDVLLFP 1062


>gi|86151776|ref|ZP_01069990.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni
            260.94]
 gi|85841405|gb|EAQ58653.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni
            260.94]
          Length = 1200

 Score =  993 bits (2567), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1058 (36%), Positives = 593/1058 (56%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F  ++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGVIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++            F     + A++  L +KK+F D
Sbjct: 118  INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
            ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237  LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLDLNLGNPTPPNFKFT 296

Query: 296  --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                K+ + I  EE  E                GLE RL     +K    ++Y+QRL+ E
Sbjct: 297  REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLKFIDESKH---EEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +   A   + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDA-AYEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R    +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    K        +   E+ +LG Y SGHPLD +   +  +      +  +      
Sbjct: 953  VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|229490423|ref|ZP_04384264.1| DNA polymerase III, alpha subunit family [Rhodococcus erythropolis
            SK121]
 gi|229322713|gb|EEN88493.1| DNA polymerase III, alpha subunit family [Rhodococcus erythropolis
            SK121]
          Length = 1178

 Score =  992 bits (2566), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/1067 (32%), Positives = 553/1067 (51%), Gaps = 53/1067 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL  H+ YS+L+GA  +  + ++ A  +  A+ +TD  N++ A +F  +A +AGI
Sbjct: 2    ADSFVHLHNHTEYSMLDGAAKVGAMFEEAARLEMTAVGMTDHGNMYGASQFYNEAKSAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIG +  I  +                    +       + ++   A G + L +L S
Sbjct: 62   KPIIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +  Q  +  R+    L     EG+I  TG  SG I         + A +    ++++
Sbjct: 122  LASIEGQLGKWPRMD-EELIAAHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI 180

Query: 178  F-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            +  D  ++ L  H    +R     ++ +     +P +ATN+  +++++  E H+ L+ + 
Sbjct: 181  WGPDNFFLELMDHGLSIERRVREGLLDIGKQLGIPPLATNDCHYVTKDAAENHEALLCIQ 240

Query: 236  HSTVVSQKDRPRVTPD-HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVH--API 291
                +S   R +   D +YLK+ +EM +I+  ++P A +NTV I  R      V      
Sbjct: 241  TGKTLSDPTRFKFDGDGYYLKSAAEMRAIWDNEVPGACDNTVAIGERVQSYEDVWAFHDR 300

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +P F   E       ++  LR + + GL+ R   G        Q+Y  R D+E+ VI  M
Sbjct: 301  MPIFPVPEG----HTQQTFLRAEVMRGLDRRFPSGP------PQEYLARADYEIGVINEM 350

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFL+V D I  AK   I VGPGRGS AGS+ AYA+ IT+IDP+ + LLFERFLNP+
Sbjct: 351  GFPAYFLVVGDLINHAKDVGIRVGPGRGSAAGSLVAYAMGITNIDPIPYGLLFERFLNPE 410

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPY 469
            R+SMPD DIDF   RR E++RY  +K+G+++VAQ+ITFG+++ KAA++D  R    +  +
Sbjct: 411  RVSMPDIDIDFDDRRRGEMVRYATDKWGNDKVAQVITFGTIKTKAAIKDSARVQFGKPGF 470

Query: 470  SQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEG 520
            +  D++ K +P    A  +S+  I D            R    + P V ++ + +  LEG
Sbjct: 471  AIADQITKALPPPIMAKDISVSGITDPKHERYKEAVEVRALIDSSPDVAKIYKTAVGLEG 530

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R+A  HA  +++   PL+  +P+++  +    +T ++    E  GL+K DFLGL+ LT
Sbjct: 531  LIRNAGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLT 590

Query: 581  LLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  +L+ +   RG+ +DL  +P DD  TY LL    TLG+FQL+  GMR+ L+ MQP  
Sbjct: 591  VIGDTLENIKANRGIDLDLDTLPMDDAATYELLARGDTLGVFQLDGGGMRELLKLMQPTG 650

Query: 640  IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQE 693
              DI+A ++LYRPGP+  D  + Y  RKN  E +  IHP ++     +L ET G+IIYQE
Sbjct: 651  FGDIVAALALYRPGPMGVDAHISYAKRKNALEDVKPIHPELEEPLAEILSETYGLIIYQE 710

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            Q+MQ+AQ ++GY+L +AD+LRRAMGKK   E++K    F  G   N  S+     +++ +
Sbjct: 711  QIMQLAQKVAGYTLGQADLLRRAMGKKKLSELEKAYAGFRQGMLDNNFSEAAIKALWDTV 770

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNKSH+A Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  
Sbjct: 771  LPFAGYAFNKSHSAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKSAIYLADCRKLG 830

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV 872
            I ++PP VN   VDF    + I + + +++ VG      I++A  +K  F    D+  ++
Sbjct: 831  ITVLPPDVNESRVDFATVGDDIRFGMGSVRNVGANVVASIIKARTEKSKFTDFSDYLGKI 890

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D+   N++V ESL+ AGA D  G+ R  L+    +        +K       ++F   + 
Sbjct: 891  DAMACNKKVTESLIKAGAFDSLGHPRKGLMLVHADAIDSVMSTKKAEAIGQFDLFGGAEA 950

Query: 933  TFSD----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
              S      + +      +S  R   E+ +LG Y SGHPL+  + ILR+         + 
Sbjct: 951  DESITSVFDVKIPD-EEWDSKHRLALEREMLGLYVSGHPLNGVEHILRQQSDTSIAAILE 1009

Query: 989  --TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G  + L  ++ S  ++  + G     V   +     E  FFP
Sbjct: 1010 GGVQDGAQVTLGGIIASVDRRVNKNGLTWCIVQLEDLVGGIEVLFFP 1056


>gi|315931919|gb|EFV10874.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni
            327]
          Length = 1088

 Score =  992 bits (2566), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1058 (36%), Positives = 593/1058 (56%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++            F     + A++  L +KK+F D
Sbjct: 118  INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
            ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237  LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 296  --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                K+ +    EE  E                GLE RL     +K    ++Y+QRL+ E
Sbjct: 297  REYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEERLKFIDESKH---EEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +   A   + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDA-AYEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R    +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    K        +   E+ +LG Y SGHPLD +   +  +      +  +      
Sbjct: 953  VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|296283776|ref|ZP_06861774.1| DNA polymerase III, alpha subunit [Citromicrobium bathyomarinum
            JL354]
          Length = 1155

 Score =  992 bits (2566), Expect = 0.0,   Method: Composition-based stats.
 Identities = 462/1041 (44%), Positives = 640/1041 (61%), Gaps = 33/1041 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FV L+V S++S+LEGA+    I         PAIA+ D N L+ ++ F+Q    
Sbjct: 1    MAFAP-FVPLRVLSAFSMLEGAIEPKAIAKLATERGFPAIAMCDRNGLYGSVPFAQACIE 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPI+G  L +   D+             +  + L V    G+  L  LVS  +L   
Sbjct: 60   NGVQPIVGALLGVARPDS-----------DQIDHLPLYVQDDAGWLNLCRLVSAAHLERP 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +Q   + L+ L E  T+GLI LTG S G + R         A + L   + LF  RLY+
Sbjct: 109  LEQVPHVPLAAL-EGYTDGLIALTGASEGAVTRLLAQGQGVHAARYLDRLEALFPQRLYI 167

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R         E  ++ LAY  +LPLVATN + F     Y+AHD ++ +A+S  + ++
Sbjct: 168  ELARRGEPTEVAAEEALLDLAYARDLPLVATNPANFAEPHFYKAHDAMLCIANSRKLWEE 227

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DRPR     Y+K+   M  +F+DLPEAL NT+ IA+RC+F     APILP          
Sbjct: 228  DRPRSAKAAYVKSAPMMQELFADLPEALANTLTIAQRCAFAPPQRAPILPSLAGD----- 282

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             + E   L   A  GL+ RLA          Q Y +RLD+E+ +I  M F GYFLIVADF
Sbjct: 283  LEGEAKMLAEDARRGLDARLAIYEDLSDEERQTYYERLDYEVGIIHNMGFPGYFLIVADF 342

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK +NIPVGPGRGSGAGS+ A++LTITD+DP+R  LLFERFLNP+R+SMPDFDIDFC
Sbjct: 343  IKWAKDHNIPVGPGRGSGAGSLVAWSLTITDLDPIRLGLLFERFLNPERVSMPDFDIDFC 402

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RR EVIRYVQ KYG ++VAQIITFG ++A+A LRD GR L M Y QVDRLCK++PN P
Sbjct: 403  ETRRGEVIRYVQEKYGADKVAQIITFGKMKARAVLRDCGRILDMSYGQVDRLCKMVPNHP 462

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              P SL +A+   + F+     D  V  L++++ +LEGL R++STHAAG+VIGDRPL++L
Sbjct: 463  TDPWSLPRALNGAAEFKGEYDNDNEVRTLVDLAMQLEGLPRNSSTHAAGVVIGDRPLAEL 522

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD RSD+PVTQF+MK +E AGL+KFDFLGLKTL++LQK++D L +RG++ DL  + 
Sbjct: 523  VPLYRDPRSDMPVTQFDMKVVEGAGLVKFDFLGLKTLSVLQKAVDLLKRRGIECDLGTVS 582

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +DD   Y L+    T+G+FQLES GMR+ L  ++P   EDIIALVSLYRPGP+DNI ++ 
Sbjct: 583  WDDKAVYDLMQRGDTVGVFQLESEGMRRTLTAVKPTKFEDIIALVSLYRPGPMDNIPLFG 642

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G E I   H  ++ +LKET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKK +
Sbjct: 643  KRKAGVEPIEYPHAKLEGILKETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKNQ 702

Query: 723  EEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             EMDKQ++RFI G  K + I    A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K 
Sbjct: 703  AEMDKQRQRFIDGCKKVSDIEANEASALFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKA 762

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----NRIYY 837
            HYP EF AA+M  +MD  EK+  F  DAR+  I++  P +N    +F V        + Y
Sbjct: 763  HYPEEFYAAAMCFDMDQSEKLAVFVDDARRNGIEVAAPDLNRSEAEFSVERTDDGYAVRY 822

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LA ++ VG      I+ E  A   F+SL+DF SR+    +N R LE+L+ AGA D    
Sbjct: 823  GLAGLRNVGEKAMDAIVAEREAHGWFESLDDFFSRLPKGAMNSRQLEALIAAGAFDHLEP 882

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R QL  ++D +   A    + R++  E +F +E  + +  + ++     + + R   E+
Sbjct: 883  NRGQLTANVDLLLAVADAAIRERSSGQEGLFGNE-DSANQGLRMKDAEDWSRAERMAKER 941

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESV-----ATIRGNNIRLAAMVVSKQQKKTRK 1011
               GFYFS HP++ ++ +    G + Y   +        RG  + +AAMV   ++ +TR+
Sbjct: 942  ETFGFYFSAHPIEQFRDVASANGARSYSSLMTGGPAGEARGRAV-IAAMVEGAKRGQTRR 1000

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G       FS+   ++ A  F
Sbjct: 1001 GKDFIRADFSDSTGQFSAACF 1021


>gi|306818530|ref|ZP_07452253.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus mulieris
            ATCC 35239]
 gi|304648703|gb|EFM46005.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus mulieris
            ATCC 35239]
          Length = 1273

 Score =  992 bits (2566), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1076 (33%), Positives = 571/1076 (53%), Gaps = 58/1076 (5%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + +  S  FVHL VH+ YS+L+GA  +  +++K A + Q A+AITD   LF A EF   A
Sbjct: 2    EGMASS-DFVHLHVHTDYSILDGAAKVARLVEKAAENGQSAVAITDHGYLFGAYEFYAAA 60

Query: 63   CAAGIQPIIGCQLDIDMQD---NLKMTNQGK----------TPFPTVPSIVLLVSTAEGY 109
               G++PIIG +  +       + K  + G           +       + LL  T EG 
Sbjct: 61   VKTGVKPIIGLEAYVTPGTSRFDTKRVHWGTLEQQKAGDDVSANGAYTHMTLLSRTTEGM 120

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L  L S   +  Q  +  R+    LQ     GL+  +G  SG +           A +
Sbjct: 121  HNLFRLGSLASIDGQMGKWPRLDRELLQRYAG-GLVGTSGCPSGEVQVKLRLGLYDEALR 179

Query: 170  RLLTFKKLFGDRL-YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                 + +FG    Y+ L  H    +R     +++LA   + PL+ATN+S ++++ED E 
Sbjct: 180  TAGELQDIFGKEFFYIELMDHGLSIERRVREDLLRLAKALDAPLLATNDSHYVNKEDREI 239

Query: 228  HDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSF--- 283
             D ++ +     ++ ++R R    D+YL+  +EM  +F DLP+A +NT+ +A +C     
Sbjct: 240  QDAMLCINSGDQLNNENRFRFDGTDYYLRPSNEMRELFRDLPQACDNTLLVAEQCEVKFS 299

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
             +   A  +P+F     ++    EE+    +   GL  R  QG        +  R+R D+
Sbjct: 300  TVDDGASFMPKFQVPAGEN----EESWFVKEVERGLNYRYPQGI------TEAVRKRADY 349

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            E+ +I +M F+GYFL+V+D+IQWAK+  I VGPGRGSGAGS+ AYA+ ITD+DPL+  LL
Sbjct: 350  EVGIILQMGFAGYFLVVSDYIQWAKQQGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLL 409

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R+SMPD D+DF   RR EVI YV  KYG +++AQ++T+G+++ K AL+D  R
Sbjct: 410  FERFLNPERVSMPDIDVDFDDRRRAEVIEYVTRKYGKDKIAQVVTYGTIKTKQALKDAAR 469

Query: 464  ALQMPYSQVDRLCKLIPN-DPAHPVSLQAI--------ADDSRFREARLADPSVDRLLEI 514
                 +S  + L K +P       + L  I         +   FR+   +      +  +
Sbjct: 470  ISGAAFSVGENLTKALPPAAMGKDIPLSQIYNKDHPRYKEAEEFRKVVASTGENQAIFSL 529

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            +  +EG+ R    HA  +++    L+ ++PM + ++    +TQF+    E  GL+K DFL
Sbjct: 530  ASGVEGMTRQWGVHACAVIMSSHTLTDIIPMMKRLQDGAIITQFDYPTCEHLGLLKMDFL 589

Query: 575  GLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GLK LT++  +LD +        DL  +P DD  TY LL++  TLG+FQL+  GMR  L+
Sbjct: 590  GLKNLTIISDALDNIKLNGKTPPDLEHLPIDDRATYELLSSGETLGVFQLDGGGMRTLLK 649

Query: 634  GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQG 687
             ++P   +DI ALV+LYRPGP+  D+   Y  RKNG   I  IHP     +  +L  T G
Sbjct: 650  QLRPTEFDDISALVALYRPGPMGADSHTNYALRKNGAMGIKPIHPELADPLKDILGYTYG 709

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +IIYQEQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G   NG S+    
Sbjct: 710  LIIYQEQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMLGNGYSEDCCK 769

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++++L  FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T +  + +K+  +  
Sbjct: 770  TLWDILVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQT-DKDKLGMYLN 828

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLE 866
            + R+  I+++PP VN     F      I + LA+I+ VG      I+++  D   + S +
Sbjct: 829  EVRRMGIRVLPPDVNASVATFAPDGADIRFGLASIRNVGEGVVEGIIKSRRDKGAYTSFQ 888

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF ++V ++  N+R +ESL+ AGA D FG +R  L+   +        +++  +    ++
Sbjct: 889  DFLNKVPAEVCNKRAIESLIKAGAFDAFGVARRALVAVHEEAVDSVISLKRQESKGQFDL 948

Query: 927  FAHEKGTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            FA   G   D      + +          +   E+++LG Y S HPL   + +LR++   
Sbjct: 949  FASLDGGGDDLLEGFSVEIPALKEWPKKDKLAFERQMLGLYVSDHPLSGMENVLRRLAAD 1008

Query: 982  GYEESVA---TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
               E  +         +R+A ++ S + K +++ G         + +      FFP
Sbjct: 1009 QIIELTSEDGKPNDAEVRIAGLITSVEHKTSKRTGQPWAIARLEDMSGAINVLFFP 1064


>gi|227875268|ref|ZP_03993410.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|227844173|gb|EEJ54340.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
          Length = 1273

 Score =  992 bits (2566), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1076 (33%), Positives = 571/1076 (53%), Gaps = 58/1076 (5%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + +  S  FVHL VH+ YS+L+GA  +  +++K A + Q A+AITD   LF A EF   A
Sbjct: 2    EGMASS-DFVHLHVHTDYSILDGAAKVARLVEKAAENGQSAVAITDHGYLFGAYEFYAAA 60

Query: 63   CAAGIQPIIGCQLDIDMQD---NLKMTNQGK----------TPFPTVPSIVLLVSTAEGY 109
               G++PIIG +  +       + K  + G           +       + LL  T EG 
Sbjct: 61   VKTGVKPIIGLEAYVTPGTSRFDTKRVHWGTLEQQKAGDDVSANGAYTHMTLLSRTTEGM 120

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L  L S   +  Q  +  R+    LQ     GL+  +G  SG +           A +
Sbjct: 121  HNLFRLGSLASIDGQMGKWPRLDRELLQRYAG-GLVGTSGCPSGEVQVKLRLGLYDEALR 179

Query: 170  RLLTFKKLFGDRL-YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                 + +FG    Y+ L  H    +R     +++LA   + PL+ATN+S ++++ED E 
Sbjct: 180  TAGELQDIFGKEFFYIELMDHGLSIERRVREDLLRLAKALDAPLLATNDSHYVNKEDREI 239

Query: 228  HDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSF--- 283
             D ++ +     ++ ++R R    D+YL+  +EM  +F DLP+A +NT+ +A +C     
Sbjct: 240  QDAMLCINSGDQLNNENRFRFDGTDYYLRPSNEMRELFRDLPQACDNTLLVAEQCEVKFS 299

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
             +   A  +P+F     ++    EE+    +   GL  R  QG        +  R+R D+
Sbjct: 300  TVDDGASFMPKFQVPAGEN----EESWFVKEVERGLNYRYPQGI------TEAVRKRADY 349

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            E+ +I +M F+GYFL+V+D+IQWAK+  I VGPGRGSGAGS+ AYA+ ITD+DPL+  LL
Sbjct: 350  EVGIILQMGFAGYFLVVSDYIQWAKQQGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLL 409

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R+SMPD D+DF   RR EVI YV  KYG +++AQ++T+G+++ K AL+D  R
Sbjct: 410  FERFLNPERVSMPDIDVDFDDRRRAEVIEYVTRKYGKDKIAQVVTYGTIKTKQALKDAAR 469

Query: 464  ALQMPYSQVDRLCKLIPN-DPAHPVSLQAI--------ADDSRFREARLADPSVDRLLEI 514
                 +S  + L K +P       + L  I         +   FR+   +      +  +
Sbjct: 470  ISGAAFSVGENLTKALPPAAMGKDIPLSQIYNKDHPRYKEAEEFRKVVASTGENQAIFSL 529

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            +  +EG+ R    HA  +++    L+ ++PM + ++    +TQF+    E  GL+K DFL
Sbjct: 530  ASGVEGMTRQWGVHACAVIMSSHTLTDIIPMMKRLQDGAIITQFDYPTCEHLGLLKMDFL 589

Query: 575  GLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GLK LT++  +LD +        DL  +P DD  TY LL++  TLG+FQL+  GMR  L+
Sbjct: 590  GLKNLTIISDALDNIKLNGKTPPDLEHLPIDDRATYELLSSGETLGVFQLDGGGMRTLLK 649

Query: 634  GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQG 687
             ++P   +DI ALV+LYRPGP+  D+   Y  RKNG   I  IHP     +  +L  T G
Sbjct: 650  QLRPTEFDDISALVALYRPGPMGADSHTNYALRKNGAMGIKPIHPELADPLKDILGYTYG 709

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +IIYQEQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G   NG S+    
Sbjct: 710  LIIYQEQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMLGNGYSEDCCK 769

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++++L  FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T +  + +K+  +  
Sbjct: 770  TLWDILVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQT-DKDKLGMYLN 828

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLE 866
            + R+  I+++PP VN     F      I + LA+I+ VG      I+++  D   + S +
Sbjct: 829  EVRRMGIRVLPPDVNASVATFAPDGADIRFGLASIRNVGEGVVEGIIKSRRDKGAYTSFQ 888

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF ++V ++  N+R +ESL+ AGA D FG +R  L+   +        +++  +    ++
Sbjct: 889  DFLNKVPAEVCNKRAIESLIKAGAFDAFGVARRALVAVHEEAVDSVISLKRQESKGQFDL 948

Query: 927  FAHEKGTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            FA   G   D      + +          +   E+++LG Y S HPL   + +LR++   
Sbjct: 949  FASLDGGGDDLLEGFSVEIPALKEWPKKDKLAFERQMLGLYVSDHPLSGMENVLRRLAAD 1008

Query: 982  GYEESVA---TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
               E  +         +R+A ++ S + K +++ G         + +      FFP
Sbjct: 1009 QIIELTSEDGKPNDAEVRIAGLITSVEHKTSKRTGQPWAIARLEDMSGAINVLFFP 1064


>gi|307700773|ref|ZP_07637798.1| DNA polymerase III subunit alpha [Mobiluncus mulieris FB024-16]
 gi|307613768|gb|EFN93012.1| DNA polymerase III subunit alpha [Mobiluncus mulieris FB024-16]
          Length = 1270

 Score =  992 bits (2566), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1071 (33%), Positives = 569/1071 (53%), Gaps = 57/1071 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VH+ YS+L+GA  +  +++K A + Q A+AITD   LF A EF   A   G+
Sbjct: 3    SSDFVHLHVHTDYSILDGAAKVARLVEKAAENGQSAVAITDHGYLFGAYEFYAAAVKTGV 62

Query: 68   QPIIGCQLDIDMQD---NLKMTNQGK----------TPFPTVPSIVLLVSTAEGYQRLIE 114
            +PIIG +  +       + K  + G           +       + LL  T EG   L  
Sbjct: 63   KPIIGLEAYVTPGTSRFDTKRVHWGTLEQQKAGDDVSANGAYTHMTLLSRTTEGMHNLFR 122

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S   +  Q  +  R+    LQ     GL+  +G  SG +           A +     
Sbjct: 123  LGSLASIDGQMGKWPRLDRELLQRYAG-GLVGTSGCPSGEVQVKLRLGLYDEALRTAGEL 181

Query: 175  KKLFGDRL-YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG    Y+ L  H    +R     +++LA   + PL+ATN+S ++++ED E  D ++
Sbjct: 182  QDIFGKEFFYIELMDHGLSIERRVREDLLRLAKALDAPLLATNDSHYVNKEDREIQDAML 241

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSF---ILQVH 288
             +     ++ ++R R    D+YL+  +EM  +F DLP+A +NT+ +A +C      +   
Sbjct: 242  CINSGDQLNNENRFRFDGTDYYLRPSNEMRELFRDLPQACDNTLLVAEQCEVKFSTVDDG 301

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
            A  +P+F     ++    EE+    +   GL  R  QG        +  R+R D+E+ +I
Sbjct: 302  ASFMPKFQVPAGEN----EESWFVKEVERGLNYRYPQGI------TEAVRKRADYEVGII 351

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F+GYFL+V+D+IQWAK+  I VGPGRGSGAGS+ AYA+ ITD+DPL+  LLFERFL
Sbjct: 352  LQMGFAGYFLVVSDYIQWAKQQGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLLFERFL 411

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DF   RR EVI YV  KYG +++AQ++T+G+++ K AL+D  R     
Sbjct: 412  NPERVSMPDIDVDFDDRRRAEVIEYVTRKYGKDKIAQVVTYGTIKTKQALKDAARISGAA 471

Query: 469  YSQVDRLCKLIPN-DPAHPVSLQAI--------ADDSRFREARLADPSVDRLLEISQKLE 519
            +S  + L K +P       + L  I         +   FR+   +      +  ++  +E
Sbjct: 472  FSVGENLTKALPPAAMGKDIPLSQIYNKDHPRYKEAEEFRKVVASTGENQAIFSLASGVE 531

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R    HA  +++    L+ ++PM + ++    +TQF+    E  GL+K DFLGLK L
Sbjct: 532  GMTRQWGVHACAVIMSSHTLTDIIPMMKRLQDGAIITQFDYPTCEHLGLLKMDFLGLKNL 591

Query: 580  TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +LD +        DL  +P DD  TY LL++  TLG+FQL+  GMR  L+ ++P 
Sbjct: 592  TIISDALDNIKLNGKTPPDLEHLPIDDRATYELLSSGETLGVFQLDGGGMRTLLKQLRPT 651

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQ 692
              +DI ALV+LYRPGP+  D+   Y  RKNG   I  IHP     +  +L  T G+IIYQ
Sbjct: 652  EFDDISALVALYRPGPMGADSHTNYALRKNGAMGIKPIHPELADPLKDILGYTYGLIIYQ 711

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G   NG S+     ++++
Sbjct: 712  EQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMLGNGYSEDCCKTLWDI 771

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T +  + +K+  +  + R+ 
Sbjct: 772  LVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQT-DKDKLGMYLNEVRRM 830

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
             I+++PP VN     F      I + LA+I+ VG      I+++  D   + S +DF ++
Sbjct: 831  GIRVLPPDVNASVATFAPDGADIRFGLASIRNVGEGVVEGIIKSRRDKGAYTSFQDFLNK 890

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V ++  N+R +ESL+ AGA D FG +R  L+   +        +++  +    ++FA   
Sbjct: 891  VPAEVCNKRAIESLIKAGAFDAFGVARRALVAVHEEAVDSVISLKRQESKGQFDLFASLD 950

Query: 932  GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            G   D      + +          +   E+++LG Y S HPL   + +LR++      E 
Sbjct: 951  GGGDDLLEGFSVEIPALKEWPKKDKLAFERQMLGLYVSDHPLSGMENVLRRLAADQIIEL 1010

Query: 987  VA---TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
             +         +R+A ++ S + K +++ G         + +      FFP
Sbjct: 1011 TSEDGKPNDAEVRIAGLITSVEHKTSKRTGQPWAIARLEDMSGAINVLFFP 1061


>gi|295839452|ref|ZP_06826385.1| DNA polymerase III, alpha subunit [Streptomyces sp. SPB74]
 gi|197698735|gb|EDY45668.1| DNA polymerase III, alpha subunit [Streptomyces sp. SPB74]
          Length = 1181

 Score =  992 bits (2566), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/1072 (32%), Positives = 545/1072 (50%), Gaps = 55/1072 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F HL VH+ YSLL+GA  L ++           IA++D  NL  A +F  +A  
Sbjct: 1    MSAKTPFTHLHVHTQYSLLDGAARLKDMFQACNEMGMTHIAMSDHGNLHGAYDFFHQAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  + + G   L +
Sbjct: 61   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFK 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +         + A K    +
Sbjct: 121  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQPEEALKAAADY 179

Query: 175  KKLF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  DR ++ L  H    +      ++++     +P + TN+S +    +  AHD L+
Sbjct: 180  QDIFGKDRYFLELMDHGIDIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHESVAHDALL 239

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHA 289
             +     +S  DR R     +YLK   EM +I S     E   NT+ +A +         
Sbjct: 240  CIQTGKNLSDPDRFRFDGTGYYLKTTDEMYAIDSSDAWQEGCRNTLLVAEQVDTTGMFEK 299

Query: 290  -PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P+F   E       E    + +   G+E R   G         D +++ ++E++VI
Sbjct: 300  RDLMPKFDIPEGF----TEITWFQEEVRRGMERRFPAGV------PDDRQRQAEYEMDVI 349

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFL
Sbjct: 350  IQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFL 409

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  P
Sbjct: 410  NPERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYP 469

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIA--------DDSRFREARLADPSVDRLLEISQKLE 519
            Y+  DR+ K +P D     + L  I         +    R     +P V ++++ ++ +E
Sbjct: 470  YAMGDRITKAMPADVLGKGIDLDGITNPTHPRYSEAGEVRGMYENEPDVKKVIDTAKGVE 529

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++   P+    P++     ++ +TQ++    E  GL+K DFLGL+ L
Sbjct: 530  GLVRQMGVHAAGVIMSSEPIIDHAPVWVRHTDNVTITQWDYPQCESLGLLKMDFLGLRNL 589

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   +G ++DL  IP DD +TY LL    TLG+FQ +   MR  L  M+PD
Sbjct: 590  TIMDDAVKMVKSNKGRELDLLAIPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRLMKPD 649

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI A+ +LYRPGP+       Y  RKNG+++I  IHP ++  LKE    T G+I+YQ
Sbjct: 650  NFEDISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEVLGLTYGLIVYQ 709

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  +E++K    F +GA KNG S      ++++
Sbjct: 710  EQVQKAAQIVAGYSLGEADILRRVMGKKKADELEKNFVLFQAGARKNGYSDEAIQALWDV 769

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+ 
Sbjct: 770  LVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAAVLTSVRDDKDKSAVYLNECRRM 829

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             I+++PP VN    +F   GD+ I + L A++ VG      I+ +  A   + S  D+  
Sbjct: 830  GIRVLPPDVNESLANFAAQGDDVILFGLTAVRNVGQNVVESIIRSRKAKGKYASFPDYLD 889

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--- 927
            +V++   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F   
Sbjct: 890  KVEAVVCNKRTTESLIKAGAFDQLGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGM 949

Query: 928  ----AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                  ++  F   +T         S     E+ +LG Y S HPL   + +L      G 
Sbjct: 950  GDDDGKDEPGFGLDVTFGD-DEWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGI 1008

Query: 984  EESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +        G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1009 GQLTGGDFGDGAVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1060


>gi|269978157|ref|ZP_06185107.1| DNA polymerase III subunit alpha [Mobiluncus mulieris 28-1]
 gi|269933666|gb|EEZ90250.1| DNA polymerase III subunit alpha [Mobiluncus mulieris 28-1]
          Length = 1270

 Score =  992 bits (2565), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1071 (33%), Positives = 569/1071 (53%), Gaps = 57/1071 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VH+ YS+L+GA  +  +++K A + Q A+AITD   LF A EF   A   G+
Sbjct: 3    SSDFVHLHVHTDYSILDGAAKVARLVEKAAENGQSAVAITDHGYLFGAYEFYAAAVKTGV 62

Query: 68   QPIIGCQLDIDMQD---NLKMTNQGK----------TPFPTVPSIVLLVSTAEGYQRLIE 114
            +PIIG +  +       + K  + G           +       + LL  T EG   L  
Sbjct: 63   KPIIGLEAYVTPGTSRFDTKRVHWGTLEQQKAGDDVSANGAYTHMTLLSRTTEGMHNLFR 122

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S   +  Q  +  R+    LQ     GL+  +G  SG +           A +     
Sbjct: 123  LGSLASIDGQMGKWPRLDRELLQRYAG-GLVGTSGCPSGEVQVKLRLGLYDEALRTAGEL 181

Query: 175  KKLFGDRL-YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG    Y+ L  H    +R     +++LA   + PL+ATN+S ++++ED E  D ++
Sbjct: 182  QDIFGKEFFYIELMDHGLSIERRVREDLLRLAKALDAPLLATNDSHYVNKEDREIQDAML 241

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSF---ILQVH 288
             +     ++ ++R R    D+YL+  +EM  +F DLP+A +NT+ +A +C      +   
Sbjct: 242  CINSGDQLNNENRFRFDGTDYYLRPSNEMRELFRDLPQACDNTLLVAEQCEVKFSTVDDG 301

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
            A  +P+F     ++    EE+    +   GL  R  QG        +  R+R D+E+ +I
Sbjct: 302  ASFMPKFQVPAGEN----EESWFVKEVERGLNYRYPQGI------TEAVRKRADYEVGII 351

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F+GYFL+V+D+IQWAK+  I VGPGRGSGAGS+ AYA+ ITD+DPL+  LLFERFL
Sbjct: 352  LQMGFAGYFLVVSDYIQWAKQQGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLLFERFL 411

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DF   RR EVI YV  KYG +++AQ++T+G+++ K AL+D  R     
Sbjct: 412  NPERVSMPDIDVDFDDRRRAEVIEYVTRKYGKDKIAQVVTYGTIKTKQALKDAARISGAA 471

Query: 469  YSQVDRLCKLIPN-DPAHPVSLQAI--------ADDSRFREARLADPSVDRLLEISQKLE 519
            +S  + L K +P       + L  I         +   FR+   +      +  ++  +E
Sbjct: 472  FSVGENLTKALPPAAMGKDIPLSQIYNKDHPRYKEAEEFRKVVASTGENQAIFSLASGVE 531

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R    HA  +++    L+ ++PM + ++    +TQF+    E  GL+K DFLGLK L
Sbjct: 532  GMTRQWGVHACAVIMSSHTLTDIIPMMKRLQDGAIITQFDYPTCEHLGLLKMDFLGLKNL 591

Query: 580  TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +LD +        DL  +P DD  TY LL++  TLG+FQL+  GMR  L+ ++P 
Sbjct: 592  TIISDALDNIKLNGKTPPDLEHLPIDDRATYELLSSGETLGVFQLDGGGMRTLLKQLRPT 651

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQ 692
              +DI ALV+LYRPGP+  D+   Y  RKNG   I  IHP     +  +L  T G+IIYQ
Sbjct: 652  EFDDISALVALYRPGPMGADSHTNYALRKNGAMGIKPIHPELADPLKDILGYTYGLIIYQ 711

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G   NG S+     ++++
Sbjct: 712  EQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMLGNGYSEDCCKTLWDI 771

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T +  + +K+  +  + R+ 
Sbjct: 772  LVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQT-DKDKLGMYLNEVRRM 830

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
             I+++PP VN     F      I + LA+I+ VG      I+++  D   + S +DF ++
Sbjct: 831  GIRVLPPDVNASVATFAPDGADIRFGLASIRNVGEGVVEGIIKSRRDKGAYTSFQDFLNK 890

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V ++  N+R +ESL+ AGA D FG +R  L+   +        +++  +    ++FA   
Sbjct: 891  VPAEVCNKRAIESLIKAGAFDAFGVARRALVAVHEEAVDSVISLKRQESKGQFDLFASLD 950

Query: 932  GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            G   D      + +          +   E+++LG Y S HPL   + +LR++      E 
Sbjct: 951  GGGDDLLEGFSVEIPALKEWPKKDKLAFERQMLGLYVSDHPLSGMENVLRRLAADQIIEL 1010

Query: 987  VA---TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
             +         +R+A ++ S + K +++ G         + +      FFP
Sbjct: 1011 TSEDGKPNDAEVRIAGLITSVEHKTSKRTGQPWAIARLEDMSGAINVLFFP 1061


>gi|57238919|ref|YP_180055.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str.
            Welgevonden]
 gi|57160998|emb|CAH57904.1| DNA polymerase III, alpha subunit [Ehrlichia ruminantium str.
            Welgevonden]
          Length = 1119

 Score =  992 bits (2565), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/1027 (45%), Positives = 667/1027 (64%), Gaps = 41/1027 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLL G + ++ +++       PA+A+TD+ NLF +LEFS  A   G+QPI
Sbjct: 5    FVHLRSHSDYSLLRGMIKIDTLVNLCVQYNMPAVALTDSGNLFGSLEFSDHASNVGVQPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC + +    N             +  +VLL     GY  +I+LVS  +  +Q  +  R
Sbjct: 65   IGCNIMVHYHGN------------NIGELVLLAKDQAGYNNIIDLVSNSFKGNQSGKLNR 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKKLFGDRLYVNLQR 188
            I L+ L ++  +G+I+LTGG  G + +    +     V  K LL     F + LYV LQR
Sbjct: 113  IDLNRLIQL-KDGIIILTGGYEGLLAQLLLRDVIHYNVVNKLLLA----FENNLYVELQR 167

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    E+ +++ AY   LPLVATN+ LF+ +ED+ A+DVL  ++    V+Q+DR  
Sbjct: 168  HGIKEESIVETTLIKFAYEKNLPLVATNDVLFVKKEDFPAYDVLSCISDGHYVAQEDRKM 227

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T +HY K+  EM S+F D+PEA+ NT+ IA+RCSF+ ++  PILP F         K E
Sbjct: 228  FTAEHYFKSSQEMCSLFHDIPEAIYNTLLIAQRCSFMPEIRKPILPHFPCSSG----KNE 283

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL  +A+AGLE RL    +++    + Y +RL +EL+VI  M ++GYFLIV+DFI W+
Sbjct: 284  SQELITQALAGLEKRLKLKNLSEEDMVK-YHERLLYELDVIISMDYAGYFLIVSDFICWS 342

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++R
Sbjct: 343  KRNGIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQEKR 402

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV+ KYG   VA IITFG LQA+A LRDVGR +Q+PY QVDR+CK+IP++P  PV
Sbjct: 403  DLVIEYVRKKYG--YVAHIITFGKLQARAVLRDVGRVMQIPYFQVDRICKMIPHNPVRPV 460

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L +AI  D   ++ R  D +V +LLEIS KLEGLYRH S HAAGIVI DR L +LVP+Y
Sbjct: 461  TLSEAIGMDKNLQKERDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRKLEELVPLY 520

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  + LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ +    + +RG  +D+  IP DD 
Sbjct: 521  YDSTAFLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICQLVRERGYVIDIVSIPLDDR 580

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L++  ++G+FQLESSGMR+ +  ++PD I DIIAL+SLYRPGP+DNI VY  RK+
Sbjct: 581  KTYEMLSSGDSIGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNIPVYIARKH 640

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G EK   IH +++ +LKET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKEEMD
Sbjct: 641  GLEKPDYIHSILEGVLKETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKEEMD 700

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+  FI+GA  NGI++  A  IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y +E
Sbjct: 701  NQRRTFINGAVNNGINQEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANYTIE 760

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  ASM L++ + +K++ FC  A+   I I+PP +N   V F +  + I Y+L A+K VG
Sbjct: 761  FFTASMNLDITDKDKLEMFCNQAKLHGINILPPDINYSKVFFVIEGSSIRYALGALKNVG 820

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  ++   +D  ++ + DF  R+ +K +++R+LE+++ AG LD    +R QL +S+ 
Sbjct: 821  QHAAHELI---SDVKYNDIWDFVDRISTKSVHKRMLENIIKAGVLDSIHSNRKQLFESVI 877

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                  ++ + N +    ++F  +         L +        +  NE   +GFY + H
Sbjct: 878  LFLDIIEYNKYNSSFNQISLFNDKN-----HYKLVETDDWTKEEKLYNEFSSIGFYLNNH 932

Query: 967  PLDVYKPILRKMGIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            P+  Y+ +L K+ I     ++ +       ++A ++ + + + +    +   VT S+P  
Sbjct: 933  PMQSYQDLLDKLNIGFINYDNKSAYNN---KVAGVISNIRVR-SANRDKFALVTLSDPNN 988

Query: 1026 EYEANFF 1032
             +E  F+
Sbjct: 989  IHEIAFY 995


>gi|328881766|emb|CCA55005.1| DNA polymerase III alpha subunit [Streptomyces venezuelae ATCC 10712]
          Length = 1179

 Score =  992 bits (2565), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1070 (32%), Positives = 547/1070 (51%), Gaps = 53/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA++D  NL  A +F   A  
Sbjct: 1    MTKPP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHSAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  +   G   L  
Sbjct: 60   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANNTGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGELQTRLRLGQFDEALKSASEY 178

Query: 175  KKLF-GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  DR ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEAAAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQV-H 288
             +     +S  DR R     +YLK+  EM ++ S     E   NT+ +A + S       
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLKSTDEMYAVDSSDAWQEGCRNTLLVAEQVSTDGMFVE 298

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P+F   E       E    R + + G+  R   G        +D  +++++E++ I
Sbjct: 299  KNLMPKFDIPEG----YTEVTWFREETMRGMHRRFPDGI------PEDRMKQVEYEMDTI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
              M F GYFL+VADFI WAKK  I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFL
Sbjct: 349  ISMGFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  P
Sbjct: 409  NPERISMPDVDIDFDERRRVEVIRYVTEKYGSDKVAMIGTYGKIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y+  DRL K +P D     + L  I D S          R     +P V ++++ ++ +E
Sbjct: 469  YAMGDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRAMYENEPDVKKVIDTARGVE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   +G+ +DL  +P DD +T+ LL    TLG+FQ +   MR  L  M+PD
Sbjct: 589  TIMDDAVKMVKANKGIDLDLLALPLDDPKTFELLQRGDTLGVFQFDGGPMRSLLRLMKPD 648

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQ 692
              EDI A+ +LYRPGP+       Y  RKNG+++I  IHP     ++ +L  T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEKPLEEVLAVTYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F +GA K G S      ++++
Sbjct: 709  EQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVIFEAGAKKKGFSDEAIKALWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H+AAY ++SY TA++K +YP E++A  +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAGLLTSVKDDKDKSAVYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             I+++PP+VN    +F   GD+ I + L+A++ VGT     I++   A   + +  DF  
Sbjct: 829  GIKVLPPNVNESESNFAAQGDDVILFGLSAVRNVGTNVVESIIKTRKAKGKYSTFPDFLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +V++   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F   
Sbjct: 889  KVEAVVCNKRTIESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVAVKRKEAEGQFDLFGGM 948

Query: 931  KGTFSDKITL---EKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                +D+       +FS      S     E+ +LG Y S HPL   + +L         +
Sbjct: 949  GDESTDEPGFGLDVEFSDVEWEKSYLLAQEREMLGLYVSDHPLFGIEHVLSDKTDAAISQ 1008

Query: 986  SV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1009 LTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|157415005|ref|YP_001482261.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni
            81116]
 gi|157385969|gb|ABV52284.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
            81116]
 gi|307747643|gb|ADN90913.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni
            M1]
          Length = 1200

 Score =  992 bits (2565), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1058 (36%), Positives = 593/1058 (56%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++            F     + A++  L +KK+F D
Sbjct: 118  INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
            ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237  LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 296  --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                K+ +    EE  E                GLE RL     +K    ++Y+QRL+ E
Sbjct: 297  REYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEERLKFIDESKH---EEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +   A   + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDA-AYEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R    +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    K        +   E+ +LG Y SGHPLD +   +  +      +  +      
Sbjct: 953  VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|58578851|ref|YP_197063.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str.
            Welgevonden]
 gi|58417477|emb|CAI26681.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str.
            Welgevonden]
          Length = 1122

 Score =  992 bits (2565), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/1027 (45%), Positives = 667/1027 (64%), Gaps = 41/1027 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLL G + ++ +++       PA+A+TD+ NLF +LEFS  A   G+QPI
Sbjct: 8    FVHLRSHSDYSLLRGMIKIDTLVNLCVQYNMPAVALTDSGNLFGSLEFSDHASNVGVQPI 67

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC + +    N             +  +VLL     GY  +I+LVS  +  +Q  +  R
Sbjct: 68   IGCNIMVHYHGN------------NIGELVLLAKDQAGYNNIIDLVSNSFKGNQSGKLNR 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKKLFGDRLYVNLQR 188
            I L+ L ++  +G+I+LTGG  G + +    +     V  K LL     F + LYV LQR
Sbjct: 116  IDLNRLIQL-KDGIIILTGGYEGLLAQLLLRDVIHYNVVNKLLLA----FENNLYVELQR 170

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    E+ +++ AY   LPLVATN+ LF+ +ED+ A+DVL  ++    V+Q+DR  
Sbjct: 171  HGIKEESIVETTLIKFAYEKNLPLVATNDVLFVKKEDFPAYDVLSCISDGHYVAQEDRKM 230

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T +HY K+  EM S+F D+PEA+ NT+ IA+RCSF+ ++  PILP F         K E
Sbjct: 231  FTAEHYFKSSQEMCSLFHDIPEAIYNTLLIAQRCSFMPEIRKPILPHFPCSSG----KNE 286

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL  +A+AGLE RL    +++    + Y +RL +EL+VI  M ++GYFLIV+DFI W+
Sbjct: 287  SQELITQALAGLEKRLKLKNLSEEDMVK-YHERLLYELDVIISMDYAGYFLIVSDFICWS 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++R
Sbjct: 346  KRNGIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQEKR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV+ KYG   VA IITFG LQA+A LRDVGR +Q+PY QVDR+CK+IP++P  PV
Sbjct: 406  DLVIEYVRKKYG--YVAHIITFGKLQARAVLRDVGRVMQIPYFQVDRICKMIPHNPVRPV 463

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L +AI  D   ++ R  D +V +LLEIS KLEGLYRH S HAAGIVI DR L +LVP+Y
Sbjct: 464  TLSEAIGMDKNLQKERDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRKLEELVPLY 523

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  + LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ +    + +RG  +D+  IP DD 
Sbjct: 524  YDSTAFLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICQLVRERGYVIDIVSIPLDDR 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L++  ++G+FQLESSGMR+ +  ++PD I DIIAL+SLYRPGP+DNI VY  RK+
Sbjct: 584  KTYEMLSSGDSIGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNIPVYIARKH 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G EK   IH +++ +LKET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKEEMD
Sbjct: 644  GLEKPDYIHSILEGVLKETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKEEMD 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+  FI+GA  NGI++  A  IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y +E
Sbjct: 704  NQRRTFINGAVNNGINQEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANYTIE 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  ASM L++ + +K++ FC  A+   I I+PP +N   V F +  + I Y+L A+K VG
Sbjct: 764  FFTASMNLDITDKDKLEMFCNQAKLHGINILPPDINYSKVFFVIEGSSIRYALGALKNVG 823

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  ++   +D  ++ + DF  R+ +K +++R+LE+++ AG LD    +R QL +S+ 
Sbjct: 824  QHAAHELI---SDVKYNDIWDFVDRISTKSVHKRMLENIIKAGVLDSIHSNRKQLFESVI 880

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                  ++ + N +    ++F  +         L +        +  NE   +GFY + H
Sbjct: 881  LFLDIIEYNKYNSSFNQISLFNDKN-----HYKLVETDDWTKEEKLYNEFSSIGFYLNNH 935

Query: 967  PLDVYKPILRKMGIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            P+  Y+ +L K+ I     ++ +       ++A ++ + + + +    +   VT S+P  
Sbjct: 936  PMQSYQDLLDKLNIGFINYDNKSAYNN---KVAGVISNIRVR-SANRDKFALVTLSDPNN 991

Query: 1026 EYEANFF 1032
             +E  F+
Sbjct: 992  IHEIAFY 998


>gi|120403761|ref|YP_953590.1| DNA polymerase III subunit alpha [Mycobacterium vanbaalenii PYR-1]
 gi|119956579|gb|ABM13584.1| DNA polymerase III, alpha subunit [Mycobacterium vanbaalenii PYR-1]
          Length = 1182

 Score =  992 bits (2564), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/1067 (31%), Positives = 534/1067 (50%), Gaps = 53/1067 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  +  +L +    + PAI +TD  N+F A EF   A  AGI+P
Sbjct: 4    SFVHLHNHTEYSMLDGAAKVKPMLAEAQRLEMPAIGMTDHGNMFGASEFYNAATDAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  I      +                +   +   + ++   A G + L +L S  
Sbjct: 64   IIGIEAYIAPASRFETKRVLWGDPSQKSDDVSGGGSYTHMTMVAENATGLRNLFKLSSLA 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF- 178
                Q  +  R+    + E   EG+I  TG  SG +         + A +    ++++F 
Sbjct: 124  SFEGQLGKWARMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHDREALEAAARWREIFG 182

Query: 179  GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +  ++ L  H    +R     ++ +     +P +ATN+  +++ +  + H+ L+ +   
Sbjct: 183  PENFFLELMDHGLDIERRVREGLLDIGQKLGIPPLATNDCHYVTRDAAQNHEALLCIQTG 242

Query: 238  TVVSQKDRPRVTPD-HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPI--LP 293
              +S  +R +   D ++LK+ +EM +++   +P A ++T+ IA R      V  P   +P
Sbjct: 243  KTLSDPNRFKFDGDGYFLKSAAEMRALWDGQVPGACDSTLLIAERVQSYADVWTPKDRMP 302

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             F   E  D      + L ++ + GL+ R   GA       Q+Y  R  +E+ VI    F
Sbjct: 303  IFPVPEGHDQG----SWLTHEVMTGLQERRFHGAPV----PQEYIDRAQYEIKVICDKGF 354

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFLIVAD I +A+   I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R 
Sbjct: 355  PAYFLIVADLINYARSVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERP 414

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471
            S PD DIDF   RR E++RY  NK+G +RVAQ+ITFG+++ KAAL+D  R    Q  ++ 
Sbjct: 415  SAPDIDIDFDDRRRGEMLRYAANKWGSDRVAQVITFGTIKTKAALKDSARVHYGQPGFAI 474

Query: 472  VDRLCKL---------IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K          IP       + +   + +  R     DP V  + E ++ LEGL 
Sbjct: 475  ADRITKALPPPIMAKDIPVSGITDPTHERYKEAAEVRALIDTDPDVRTIYETARGLEGLV 534

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R+A  HA  +++   PL   +P+++  +    +T ++    E  GL+K DFLGL+ LT++
Sbjct: 535  RNAGVHACAVIMSSEPLIDAIPLWKRPQDGAVITGWDYPSCEAIGLLKMDFLGLRNLTII 594

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
               ++ +   RG+ VDL  +  DD + Y LL    TLG+FQL+   MR  L  MQP    
Sbjct: 595  GDCIENIKANRGIDVDLESLTLDDPKAYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEFN 654

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQV 695
            DI+A+++LYRPGP+       Y +RKNG++ I  IHP ++     +L ET G+I+YQEQ+
Sbjct: 655  DIVAVLALYRPGPMGMNAHNDYADRKNGRQAIKPIHPELEEPLKDILSETYGLIVYQEQI 714

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M IAQ ++ YS+ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++ +  
Sbjct: 715  MFIAQKVASYSMGKADALRKAMGKKKLEVLEAEYQGFKEGMTANGFSEKAVKALWDTILP 774

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  I 
Sbjct: 775  FAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRRLGIT 834

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            ++PP VN    +F    + I + L A++ VG      ++    +   F    D+ +++D 
Sbjct: 835  VLPPDVNESVQNFASVGDDIRFGLGAVRNVGANVVSSLVATRKEKGKFADFSDYLNKIDI 894

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
               N++V ESLV AGA D  G+ R  L     +        +K       ++F    G+ 
Sbjct: 895  AACNKKVTESLVKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGADGSG 954

Query: 935  SDK------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987
            +D       I +          +   E+ +LG Y SGHPL+    +L           + 
Sbjct: 955  ADAGDSAFTIKVPD-EEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTQIPAILD 1013

Query: 988  -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    +R+  ++ S  ++  + G         +     E  FFP
Sbjct: 1014 GDVANDTQVRVGGILASVNRRVNKNGLPWASAQIEDLTGGIEVLFFP 1060


>gi|297621741|ref|YP_003709878.1| DNA polymerase III, alpha subunit [Waddlia chondrophila WSU 86-1044]
 gi|297377042|gb|ADI38872.1| DNA polymerase III, alpha subunit [Waddlia chondrophila WSU 86-1044]
          Length = 1236

 Score =  992 bits (2564), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1084 (35%), Positives = 588/1084 (54%), Gaps = 67/1084 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L VHS YS+L+ + S+  I  K      PA+A+TD  NLF A++F +     G++PI
Sbjct: 2    FVPLHVHSQYSILDASASVKAIAAKAKEFGMPAVALTDHGNLFGAVDFYKSCKGNGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ I     L+   +            LL    EGY  L  L SR +L        R
Sbjct: 62   IGCEVYIAPNSRLEKKKERGER--AAFHQTLLAKNDEGYHNLCALSSRGFLEG-FYYFPR 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I +  L+E  + GLI L+G  S  + +A    +    ++    + ++FG+  Y+ LQRH 
Sbjct: 119  IDMELLKE-RSRGLICLSGCMSSKLSQAILDGAGDECDRLADWYLEVFGEDFYIELQRHP 177

Query: 191  GYDR-------------------------YRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
              +                               ++++A    +  VATN+S ++   D+
Sbjct: 178  MSEASLHEGGMYQESWLIQQYQGYIEKQNRLNDALLEIAERKGILYVATNDSHYIERSDW 237

Query: 226  EAHDVLMAVAHSTV----------------VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            +AH+VL+ V                      + K R   + + Y K+  EM  +F DLPE
Sbjct: 238  QAHEVLLNVQSGEPVEIWEKDSLGNPKFRVPNPKRRTYSSHEFYFKSPDEMGELFKDLPE 297

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE-------ENELRNKAVAGLEVR 322
            AL NT+ IA +C+  L       P ++    ++ +  +       E  LR     G+  R
Sbjct: 298  ALSNTLAIADKCTMELDFETKHYPVYVPPSIENTEYTDAERVESVEKFLRQLCAEGIPKR 357

Query: 323  LAQGAIAK-------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
                 + K           +   +RL+ E++VIA      Y LIV DFI WAK + IPVG
Sbjct: 358  YTPERLEKVKEVYPDRDPLEVVHERLEEEMSVIAPKGMCDYLLIVWDFINWAKNHGIPVG 417

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
            PGRGSGAGS+  Y + ITDI+PLRF+L FERF+NP+R+S PD D+D C DRR +VI+Y  
Sbjct: 418  PGRGSGAGSIVLYLIGITDIEPLRFNLFFERFINPERLSYPDIDVDICMDRRGDVIQYTL 477

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
            +KYG + VAQIITFG+++AK  LRDVGR L +P ++V+ + KL+P+D    +   A+  D
Sbjct: 478  DKYGKDNVAQIITFGTMKAKMVLRDVGRVLSVPLAKVNEIAKLVPDDLNITLET-ALEKD 536

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
               R+    D    RL+++ +KLEG  R+   HAAGI+I   PL   +P+     +++P 
Sbjct: 537  HDLRQLYEQDEETRRLVDLGKKLEGSIRNTGIHAAGIIICGDPLVNHIPVCVAKDAEMPA 596

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTT 614
            TQ++MK  E+ G++K DFLGLKTLT +Q  ++ + +R   ++D   +P D+ + ++LL  
Sbjct: 597  TQYSMKPAEQVGMLKVDFLGLKTLTAIQTCVNAIKERVGEQIDWVNLPLDNEKAFNLLNQ 656

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
              TLG+FQLES GM+     +  D  E+IIA+ +LYRPGP+D I  + NRK+G+E+I   
Sbjct: 657  GKTLGVFQLESGGMQDLARQLHLDKFEEIIAVSALYRPGPMDMIPSFINRKHGREEIDYD 716

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            HP +  +L ET G+++YQEQVMQIAQ L+ YSL E DVLRRAMGKK  E+M  Q+E+F  
Sbjct: 717  HPWMKEILAETYGIMVYQEQVMQIAQKLANYSLGEGDVLRRAMGKKDAEQMAAQREKFRL 776

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            GA +NGIS+ +++NIF+ + KFA YGFNKSHAAAY+ I+Y TA++K +YP E++AA MT 
Sbjct: 777  GALENGISENVSMNIFDKMEKFAAYGFNKSHAAAYSYIAYVTAFLKANYPEEWMAALMTC 836

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
            +  ++ K+ KF ++ +   I+++PP VN     F      I ++++ IKGVGT+    I+
Sbjct: 837  DRHDLTKLSKFIRECQAMQIKMLPPDVNEAGTTFMASKEGIRFAMSGIKGVGTSVVEAIV 896

Query: 855  -EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
             E      F+SL  F  R+DS K+ ++V+E+LV AG  D  G+SR QL  S++ + + A 
Sbjct: 897  AEREKGGRFESLYQFIKRIDSSKVGKKVIENLVEAGCFDFTGWSRDQLRMSVEPMFESAM 956

Query: 914  WVEKNRTNKHENIF---AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
              +K       ++F            +         +  +    E+ +LGF+ +GHP++ 
Sbjct: 957  KEKKEEKAGVRSLFELMGENNENLFAEPPKVNMPTPSRQIYL-KEKELLGFFLTGHPMNS 1015

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEA 1029
            +K IL ++                 R A +V + +    ++   +   +  S+  + +E 
Sbjct: 1016 FKDILERLSCIALRNVETLDHQTVFRSAFLVETVRTLFSSKSQRKFAILMVSDGIESFEL 1075

Query: 1030 NFFP 1033
              +P
Sbjct: 1076 PIWP 1079


>gi|183982382|ref|YP_001850673.1| DNA polymerase III, alpha subunit, DnaE1 [Mycobacterium marinum M]
 gi|183175708|gb|ACC40818.1| DNA polymerase III, alpha subunit, DnaE1 [Mycobacterium marinum M]
          Length = 1180

 Score =  992 bits (2564), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/1066 (31%), Positives = 540/1066 (50%), Gaps = 49/1066 (4%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              S SFVHL  H+ YS+L+GA  +  +L ++     PAI +TD  N+F A EF   A  A
Sbjct: 4    SSSRSFVHLHNHTEYSMLDGAAKITPMLAEVERLDMPAIGMTDHGNMFGASEFYNSATKA 63

Query: 66   GIQPIIGCQLDIDMQDNLK----------MTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            G++PIIG +  +                       +   +   + ++   A G + L +L
Sbjct: 64   GVKPIIGVEAYVAPGSRFDTRRITWGDPSQKGDDVSGSGSYTHLTMVAENATGLRNLFKL 123

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S      Q  +  R+    + E   EG+I  TG  SG +         + A +    ++
Sbjct: 124  SSLASFEGQLGKWSRMDAELVAE-HAEGIIATTGCPSGEVQTRLRLGHDREALESAAKWR 182

Query: 176  KLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++F  D  ++ L  H    +R     ++++    ++P +ATN+  +++ +    H+ L+ 
Sbjct: 183  EIFGADNYFLELMDHGLSIERRVREGLIEIGRKLDIPPLATNDCHYVTRDAAHNHEALLC 242

Query: 234  VAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPI 291
            V     +S  +R +   D +YLK+ +EM  ++ D +P A ++T+ IA R      V  P 
Sbjct: 243  VQTGKTLSDPNRFKFDGDGYYLKSAAEMRQLWDDDIPGACDSTLLIAERVQSYADVWTPR 302

Query: 292  --LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +P F   E  D      + L ++ +AGL  R   G        QDY  R ++E+ VI 
Sbjct: 303  DRMPIFPVPEGHD----PASWLHHEVMAGLRRRFPSGL------GQDYIDRAEYEIKVIC 352

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               F  YFLIVAD I +A+  +I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLN
Sbjct: 353  DKGFPSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLN 412

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467
            P+R S PD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAAL+D  R    Q 
Sbjct: 413  PERPSAPDIDIDFDDRRRGEMVRYAADKWGQDRVAQVITFGTIKTKAALKDSARIHYGQP 472

Query: 468  PYSQVDRLCKLIPND-PAHPVSLQAIAD--DSRFREA------RLADPSVDRLLEISQKL 518
             ++  DR+ K +P    A  + L  I D    RF+EA         DP V  + + ++ L
Sbjct: 473  GFAIADRITKALPPPIMAKDIPLSGITDPAHERFKEAAEVRGLIETDPDVRTIYQTARGL 532

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ 
Sbjct: 533  EGLIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRN 592

Query: 579  LTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  +++ +   RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP
Sbjct: 593  LTIIGDAIENIKANRGIDLDLESLPLDDKPTYELLGRGETLGVFQLDGGPMRDLLRRMQP 652

Query: 638  DCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIY 691
                DI+A+++LYRPGP+       Y +RKN ++ +  IHP ++     +L ET G+I+Y
Sbjct: 653  TEFNDIVAVLALYRPGPMGMNAHNDYADRKNNRQAVKPIHPELEEPLREILSETYGLIVY 712

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQ+M IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++
Sbjct: 713  QEQIMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWD 772

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+
Sbjct: 773  TILPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRK 832

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
              I ++PP VN   V+F      I + L A++ VG      ++        F    D+ +
Sbjct: 833  LGITVLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIGTRSGKGKFTDFSDYLN 892

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            ++D    N++V ESL+ AGA D  G+ R  L     +        +K       ++F   
Sbjct: 893  KIDISACNKKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGS 952

Query: 931  KGTFSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-- 987
                    T++          +   E+ +LG Y SGHPL+    +L           +  
Sbjct: 953  DSGADAVFTIKVPEDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDG 1012

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   +R+  ++ +  ++  + G         +     E  FFP
Sbjct: 1013 DVSNDAQVRVGGILAAVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1058


>gi|240167939|ref|ZP_04746598.1| DNA polymerase III subunit alpha [Mycobacterium kansasii ATCC 12478]
          Length = 1183

 Score =  992 bits (2564), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1069 (33%), Positives = 550/1069 (51%), Gaps = 52/1069 (4%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              S SFVHL  H+ YS+L+GA  +N +L ++   Q PAI +TD  N+F A EF   A  A
Sbjct: 4    SSSRSFVHLHNHTEYSMLDGAAKINPMLAEVERLQMPAIGMTDHGNMFGASEFYNSATQA 63

Query: 66   GIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            GI+PIIG +  I                       +   +   + ++   A G + L +L
Sbjct: 64   GIKPIIGVEAYIAPASRFDTRRIFWGDPSQKADDISGSGSYTHLTMMAENATGLRNLFKL 123

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S      Q  +  R+    + E   EG+I+ TG  SG +         + A +    ++
Sbjct: 124  SSLASFEGQLSKWSRMDAELIAE-HAEGIIITTGCPSGEVQTRLRLGQEREALEAAARWR 182

Query: 176  KL-FGDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++   +  ++ L  H    +R     ++ +  T  +P +ATN+  +++ +    H+ L+ 
Sbjct: 183  EIVGPENYFLELMDHGLTIERRVREGLLHIGRTLNIPPLATNDCHYVTRDAAHNHEALLC 242

Query: 234  VAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPI 291
            V     +S  +R +   D +YLK+ +EM  I+ D +P A ++T+ IA R      V  P 
Sbjct: 243  VQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPR 302

Query: 292  --LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +P F   +  D      + LR++  AGL  R   G  A       Y  R D+E++VI 
Sbjct: 303  DRMPVFPVPDGHD----PASWLRHEVAAGLRRRFPDGPPA------SYVTRADYEIDVIC 352

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               F  YFLIVAD I +AK   I VGPGRGS AGS+ AYAL ITDIDP+   LLFERFLN
Sbjct: 353  AKGFPSYFLIVADLIGYAKSVGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLN 412

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467
            P+R SMPD DIDF   RR E++RY  +K+GH+RVAQ+ITFG+++ KAAL+D  R    Q 
Sbjct: 413  PERTSMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQP 472

Query: 468  PYSQVDRLCKLIPN-DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKL 518
             ++  DR+ K +P    A  + L  I D +          R     DP V  + + +  L
Sbjct: 473  GFAIADRITKALPPAIMAKDIPLSGITDPAHERYKEAAEVRGLIETDPDVRTIYQTALGL 532

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ 
Sbjct: 533  EGLIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRN 592

Query: 579  LTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  ++D +   +G+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP
Sbjct: 593  LTIIGDAIDNIKANKGIDLDLESVPLDDKPTYELLGRGDTLGVFQLDGGPMRDLLRRMQP 652

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIY 691
               EDI+A+++LYRPGP+  +    Y +RKNG++ I  IHP +    + +L ET G+I+Y
Sbjct: 653  TGFEDIVAVLALYRPGPMGQNAHNDYADRKNGRQAIKPIHPELAEPLEEILAETYGLIVY 712

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQ+M+IAQ ++GYSL+ AD+LR+AMGKK +E +DK+ E F  G   NG S      +++
Sbjct: 713  QEQIMRIAQKVAGYSLARADILRKAMGKKKREVLDKEYEGFAQGMQANGFSSGAIKALWD 772

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  FADY FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+
Sbjct: 773  TILPFADYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRK 832

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
              I ++PP VN   ++F      I Y L A++ VG      +++  +D   F    D+ +
Sbjct: 833  LGITVLPPDVNESGLNFASVGEDIRYGLGAVRNVGANVVGSLIQTRSDKGKFTDFSDYLN 892

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929
            ++D    N++V ESL+ AGA D  G++R  L     +        +K       ++F   
Sbjct: 893  KIDISACNKKVTESLIKAGAFDSLGHARKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGS 952

Query: 930  EKGTFSDKITL---EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            + GT +                  +   E+ +LG Y SGHPL+    +L           
Sbjct: 953  DDGTGAADPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAGQVDTAIPAI 1012

Query: 987  V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +         +R+  ++ S  ++  + G         +     E  FFP
Sbjct: 1013 LDGDVPNDTQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1061


>gi|315926833|gb|EFV06207.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni
            DFVF1099]
          Length = 1088

 Score =  992 bits (2564), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1058 (36%), Positives = 594/1058 (56%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGIEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++            F     + A++  L +KK+F D
Sbjct: 118  INKKLLEDY-SEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
            ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237  LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 296  --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                K+ + I  EE  E                GLE RL     +K    ++Y+QRL+ E
Sbjct: 297  REYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLEERLKFIDESKH---EEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +   A   + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDA-AYEKEPKIKEFIDRHPKGLEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R    +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    K        +   E+ +LG Y SGHPLD +   +  +      +  +      
Sbjct: 953  VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|312109934|ref|YP_003988250.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|311215035|gb|ADP73639.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1]
          Length = 1104

 Score =  992 bits (2564), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1026 (38%), Positives = 598/1026 (58%), Gaps = 41/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL V S YSLL     +N+++ K    Q PA+A+TD N L+ A+ F  +    GIQP
Sbjct: 2    SFVHLHVRSCYSLLTSPAKINDLVKKAKDLQFPALALTDENVLYGAIPFYIECKRNGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG            +  +G+  +P    +VLL     GYQ L+++ S +    Q K   
Sbjct: 62   IIGMI--------TDIVLEGEEAYP----LVLLAKNETGYQHLMKISSTI----QTKTRE 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL      GLI LT G SG I+          A++ L  +K++FG+  Y+++QR 
Sbjct: 106  GIPEKWLWHY-RSGLIALTPGKSGQIETLLAHGEIIKAKQVLERYKQIFGENFYLSVQRG 164

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E Q++ L      PLVATN+  ++ +ED   H  L+AV   TV+  +     
Sbjct: 165  ENKRKEPYEQQLIALGEETNTPLVATNDVQYIEKEDAFVHRCLLAVKQGTVIETETA--A 222

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + YL    EM   FSDLP A+EN+ +IA +C   ++  +  LP++        ++  +
Sbjct: 223  AGERYLTPPEEMTERFSDLPAAVENSGKIAEQCHLDIEFGSLKLPKYPVP----TKESAD 278

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR   + GL  R+          +  YR+RL++EL+VI +M FS YFLIV DF+ +A+
Sbjct: 279  DYLRRLCMEGLHERVPS-------PSDRYRERLEYELSVIRQMGFSDYFLIVWDFMNFAR 331

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            K  I  GPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDF  DRR+
Sbjct: 332  KQGIVTGPGRGSAAGSLVAYTLYITNVDPIQYGLLFERFLNPERVSMPDIDIDFPDDRRE 391

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YV NKYG + VAQIITFG+  AKAALRD+G+ LQ+   ++  + K +PN     + 
Sbjct: 392  EVIQYVANKYGQQYVAQIITFGTFGAKAALRDIGKVLQIDAKEMASILKHVPNKHGITIQ 451

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A    + FR+A  +   + R +  + K+EGL RH STHAAG++I   PLSQ+VP+ + 
Sbjct: 452  -EAYDQSAAFRQAVQSSALIKRWVATAMKVEGLPRHTSTHAAGVIISSEPLSQIVPLQQG 510

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
               +L +TQ+ M  +E+ GL+K DFLGL+TLTLL+     + Q+    +D+  IP  D +
Sbjct: 511  -HGELYLTQYPMDVLERLGLLKMDFLGLRTLTLLEHICRLIRQQTGETIDVREIPLHDRK 569

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY L++   T GIFQLES GM++ L+ ++P   EDI+A+ +LYRPGPID I  Y  RK+G
Sbjct: 570  TYELVSEGDTNGIFQLESDGMKRVLKQLKPSQFEDIVAVNALYRPGPIDYIPSYIRRKHG 629

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +EK   +HP + P+L  T GV+IYQEQ+MQIA  ++G+SL +AD+LRRA+ KK KE +D+
Sbjct: 630  EEKAAYLHPDLAPILAPTYGVLIYQEQIMQIAAKIAGFSLGKADLLRRAVAKKKKEILDQ 689

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+  FI G  + G  ++ A ++++++ +FADYGFN+SHA AY+++SYQ A++K HYP+ F
Sbjct: 690  QRNAFIKGCMEKGYDESFANDLYDMIVRFADYGFNRSHAVAYSMLSYQLAYLKAHYPLYF 749

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             AA +T  + + EK+  +  +ARQ  I+++PPSVN     F V   +I YSLAA+K VG 
Sbjct: 750  YAALLTSVIGDEEKVALYVYEARQKRIELLPPSVNQSRYSFSVEQGKIRYSLAAVKHVGA 809

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               + I++     PF    DFC R+  K +NR+ +ESLV +G  D FG  R  LL S+D 
Sbjct: 810  AAVKAIVQERKKGPFSDFFDFCVRLFGKGINRKTIESLVLSGCFDEFGVERAALLASIDV 869

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++AQ V         +         S K    +    +   +  +E+ +LG Y S HP
Sbjct: 870  ALEHAQLVGPYVEEGMFS-------DISLKPKYVEAPAFSLEEKLMHEKELLGVYVSPHP 922

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
               ++ + R  G +     +       ++    +  +++ +T+KG  + ++T S+ + E 
Sbjct: 923  TSAHRKMFRLAGARPVMSIIREKADRLVKAGVYIAQERKTRTKKGEEMSFLTISDESGEM 982

Query: 1028 EANFFP 1033
            +A  FP
Sbjct: 983  DAVAFP 988


>gi|205355560|ref|ZP_03222331.1| DNA polymerase III alpha chain [Campylobacter jejuni subsp. jejuni
            CG8421]
 gi|205346794|gb|EDZ33426.1| DNA polymerase III alpha chain [Campylobacter jejuni subsp. jejuni
            CG8421]
          Length = 1200

 Score =  992 bits (2564), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1058 (36%), Positives = 594/1058 (56%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++            F     + A++  L +KK+F D
Sbjct: 118  INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
            ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237  LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 296  --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                K+ + I  EE  E                GLE RL     +K    ++Y+QRL+ E
Sbjct: 297  REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLKFIDESKH---EEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +   A   + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDA-AYEKEPKIKEFIDRHPKGLEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R    +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKNIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRVKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    K        +   E+ +LG Y SGHPLD +   +  +      +  +      
Sbjct: 953  VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|194097697|ref|YP_002000738.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            NCCP11945]
 gi|239998209|ref|ZP_04718133.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            35/02]
 gi|240015834|ref|ZP_04722374.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            FA6140]
 gi|240112181|ref|ZP_04726671.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            MS11]
 gi|240114926|ref|ZP_04728988.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            PID18]
 gi|240117214|ref|ZP_04731276.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            PID1]
 gi|240122764|ref|ZP_04735720.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            PID332]
 gi|240124957|ref|ZP_04737843.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            SK-92-679]
 gi|240127469|ref|ZP_04740130.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            SK-93-1035]
 gi|254492986|ref|ZP_05106157.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae 1291]
 gi|260441259|ref|ZP_05795075.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            DGI2]
 gi|268594063|ref|ZP_06128230.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268598240|ref|ZP_06132407.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae MS11]
 gi|268600585|ref|ZP_06134752.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID18]
 gi|268602902|ref|ZP_06137069.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID1]
 gi|268681369|ref|ZP_06148231.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID332]
 gi|268683537|ref|ZP_06150399.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-92-679]
 gi|268685843|ref|ZP_06152705.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-93-1035]
 gi|291044605|ref|ZP_06570314.1| DNA polymerase III [Neisseria gonorrhoeae DGI2]
 gi|293397724|ref|ZP_06641930.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae F62]
 gi|193932987|gb|ACF28811.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            NCCP11945]
 gi|226512026|gb|EEH61371.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae 1291]
 gi|268547452|gb|EEZ42870.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268582371|gb|EEZ47047.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae MS11]
 gi|268584716|gb|EEZ49392.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID18]
 gi|268587033|gb|EEZ51709.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID1]
 gi|268621653|gb|EEZ54053.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID332]
 gi|268623821|gb|EEZ56221.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-92-679]
 gi|268626127|gb|EEZ58527.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-93-1035]
 gi|291011499|gb|EFE03495.1| DNA polymerase III [Neisseria gonorrhoeae DGI2]
 gi|291611670|gb|EFF40739.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae F62]
 gi|317163496|gb|ADV07037.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            TCDC-NG08107]
          Length = 1144

 Score =  991 bits (2563), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1033 (37%), Positives = 578/1033 (55%), Gaps = 32/1033 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            P+    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PVGAADVWIGNPNAPDK----------PFRAMLVIRNDAGYLRLSELLTEAYVGQDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDTFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F++ +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDCLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQANRGRVIEYVREKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +   P+SL          +  L     D L+ +++KLE L R    HA G++I    +S 
Sbjct: 470  EANKPLSLDDAMKAQPQIQELLEAEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISD 529

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSL 600
              P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +    G  VD+  
Sbjct: 530  YSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTAGDIVDVGK 589

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI  
Sbjct: 590  IPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPD 649

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGKK
Sbjct: 650  FVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKK 708

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+K
Sbjct: 709  KPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLK 768

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSL 839
             HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +I Y+L
Sbjct: 769  AHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMKIRYAL 828

Query: 840  AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D    +R
Sbjct: 829  GAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNR 888

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              LL ++D     A   +K        +F   +      + L    + + S +   E+ V
Sbjct: 889  AMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLAEEKTV 945

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +GFY SGHP   Y   +R++              +++RLA  V + +    ++G  I +V
Sbjct: 946  IGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAFV 1001

Query: 1019 TFSEPAKEYEANF 1031
            +  + + + E   
Sbjct: 1002 SLEDSSGQAEIMV 1014


>gi|187734882|ref|YP_001876994.1| DNA polymerase III, alpha subunit [Akkermansia muciniphila ATCC
            BAA-835]
 gi|187424934|gb|ACD04213.1| DNA polymerase III, alpha subunit [Akkermansia muciniphila ATCC
            BAA-835]
          Length = 1174

 Score =  991 bits (2563), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1057 (38%), Positives = 583/1057 (55%), Gaps = 46/1057 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE------------ 57
            SFVHL  H+ YSLL+GA+ + +++ + +    PA+A+TD  NLF A+E            
Sbjct: 4    SFVHLHNHTEYSLLDGAVHIKDLIAECSRMGMPAVAVTDHGNLFGAIELVMETNSLNKSV 63

Query: 58   -FSQKACAAG-----IQPIIGCQLDIDM-QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
                K    G     ++PI GC++ +     ++K    G+        ++LL     G+Q
Sbjct: 64   AAWNKEHPEGPQKQEVKPIFGCEVYLSPTPISVKKQLPGRR---KYTHLLLLAENETGWQ 120

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L++LVSR +L        R+ +  L+E   EGLI  T   +GP++     +  + AE+ 
Sbjct: 121  NLVKLVSRSHLEG-FYYKPRVDMETLREFH-EGLICCTACIAGPLNEWLLNDQPEKAEEA 178

Query: 171  LLTFKKLF-GDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
            LL  K +F  D ++V LQ H   ++ +   ++V++A     P+VATN+  FL +ED++ H
Sbjct: 179  LLALKDIFGDDNIFVELQDHGMEEQKKCLPELVRIARKTNTPIVATNDVHFLRKEDHDMH 238

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            DVL+ +  +  ++   R R + + YLK+  EM  +F D PEA+ENT++IA RC+  +++ 
Sbjct: 239  DVLICIGTNEKLASPKRMRYSTEVYLKSPEEMREVFKDYPEAVENTLKIAERCNVAIKLD 298

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
            +    ++ E    D    EE  LR     GLE R       +    ++ R RLD+EL +I
Sbjct: 299  STSTEKYPEFGTPDGSSREE-YLRKVCYKGLEERY---GKERVAADKELRDRLDYELGII 354

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             ++KF  YFLI ADFI WAK ++IPVGPGRGS AGS+ AYA+ IT+IDPLRF L+FERFL
Sbjct: 355  NQLKFPSYFLITADFINWAKDHDIPVGPGRGSAAGSLVAYAMKITNIDPLRFGLIFERFL 414

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+S PD DIDFCQ RR EVI YV+ KYG   V+ IIT+G++ AK+ LRDV R + M 
Sbjct: 415  NPERVSPPDIDIDFCQTRRPEVIDYVRQKYGERAVSHIITYGTMGAKSVLRDVARVMDMS 474

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            Y+  DR+ KLI   P   +   +   +   RE   +D     L   + +LEGL R+   H
Sbjct: 475  YADGDRISKLIETGPKVTLQ-SSYKSNEELRELIASDEGYAELWGYATRLEGLIRNVGVH 533

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            AAG+VIGDRPL + V + RD  SD     V Q +M  I + GL+K DFLGLKTLT++  +
Sbjct: 534  AAGVVIGDRPLDEHVALTRDDLSDPHAAVVAQCDMSAIYEVGLLKMDFLGLKTLTVMHDA 593

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
              +   R  +  L  +P DD ET  LL    T+G+FQLES GM           IEDII 
Sbjct: 594  EQYARWRVPEFKLDSVPLDDRETLDLLNRGDTMGVFQLESGGMVDTCRRYGIQKIEDIID 653

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            L++LYRPG +  +      K G  ++   HPL++ +  ET GV+IYQEQV   A+LL+GY
Sbjct: 654  LLALYRPGAMQFMDEMIEVKKGLRQVEYEHPLLEQVSGETYGVMIYQEQVQAAAKLLAGY 713

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKS 764
            +L  AD+LRRAMGKK   +M K+K  F+ G  K N I +  A  IF+ + KFA YGFNKS
Sbjct: 714  TLGGADLLRRAMGKKDPAKMAKEKAHFVEGCWKTNQIDEKTATAIFDKIEKFAGYGFNKS 773

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+A Y  ISY TA++K H+PVEFL   M+ E +N +KI  F Q+A +  I+I+PP VN  
Sbjct: 774  HSACYGHISYWTAYLKAHFPVEFLCGLMSNEANN-DKIGVFIQEANRMGIEILPPDVNKS 832

Query: 825  CVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
             + F           + Y LAAIK VG    + ++E    +  F S+ED C+R+DSK +N
Sbjct: 833  MLKFTPEKMPSGKLAVRYGLAAIKNVGEGAMQILLEEREKNGEFSSMEDICNRLDSKSVN 892

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            +++LESL+ AGALD     R  L + +D     A  V K++     ++F         K 
Sbjct: 893  KKILESLIRAGALDWTLEPRCVLFERVDLALSGASQVHKDKALGQGSLFDMTFEAPRVKD 952

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG---YEESVATIRGNNI 995
                    +   R  +E+ +LG YF GHPLD  + ++           +           
Sbjct: 953  E-PAVPEWSKEQRMGDEKDLLGAYFCGHPLDSMRGVIDAEKYTRIGLIDTLEPHELKQKH 1011

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++A MV S   K ++ G +   +T  +     E   +
Sbjct: 1012 QIAGMVRSVTPKISKAGRKFAILTLEDFTGSIEVLLW 1048


>gi|295399508|ref|ZP_06809490.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
            C56-YS93]
 gi|294978974|gb|EFG54570.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
            C56-YS93]
          Length = 1104

 Score =  991 bits (2563), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/1026 (38%), Positives = 598/1026 (58%), Gaps = 41/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL V S YSLL     +++++ K    Q PA+A+TD N L+ A+ F  +    GIQP
Sbjct: 2    SFVHLHVRSCYSLLTSPAKISDLVKKAKDLQFPALALTDENVLYGAIPFYIECKRNGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG            +  +G+  +P    +VLL     GYQ L+++ S +    Q K   
Sbjct: 62   IIGMI--------TDIVLEGEEAYP----LVLLAKNETGYQHLMKISSTI----QTKTRE 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL      GLI LT G SG I+          A++ L  +K++FG+  Y+++QR 
Sbjct: 106  GIPEKWLWHY-RSGLIALTPGKSGQIETLLAHGEIIKAKQVLERYKQIFGENFYLSVQRG 164

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E Q++ L      PLVATN+  ++ +ED   H  L+AV   TV+  +     
Sbjct: 165  ENKRKEPYEQQLIALGEETNTPLVATNDVQYIEKEDAFVHRCLLAVKQGTVIETETA--A 222

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + YL    EM   FSDLP A+EN+ +IA +C   ++  +  LP++        ++  +
Sbjct: 223  AGERYLTPPEEMTERFSDLPAAVENSGKIAEQCHLDIEFGSLKLPKYPVP----TKESAD 278

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR   + GL  R+          +  YR+RL++EL+VI +M FS YFLIV DF+ +A+
Sbjct: 279  DYLRRLCMEGLHERVPS-------PSDRYRERLEYELSVIRQMGFSDYFLIVWDFMNFAR 331

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            K  I  GPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDF  DRR+
Sbjct: 332  KQGIVTGPGRGSAAGSLVAYTLYITNVDPIQYGLLFERFLNPERVSMPDIDIDFPDDRRE 391

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YV NKYG + VAQIITFG+  AKAALRD+G+ LQ+   ++  + K +PN     + 
Sbjct: 392  EVIQYVANKYGQQYVAQIITFGTFGAKAALRDIGKVLQIDAKEMASILKHVPNKHGITIQ 451

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A    + FR+A  +   + R +  + K+EGL RH STHAAG++I   PLSQ+VP+ + 
Sbjct: 452  -EAYDQSAAFRQAVQSSALIKRWVATAMKVEGLPRHTSTHAAGVIISSEPLSQIVPLQQG 510

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
               +L +TQ+ M  +E+ GL+K DFLGL+TLTLL+     + Q+    +D+  IP  D +
Sbjct: 511  -HGELYLTQYPMDVLERLGLLKMDFLGLRTLTLLEHICRLIRQQTGEMIDVREIPLHDRK 569

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY L++   T GIFQLES GM++ L+ ++P   EDI+A+ +LYRPGPID I  Y  RK+G
Sbjct: 570  TYELVSEGDTNGIFQLESDGMKRVLKQLKPSQFEDIVAVNALYRPGPIDYIPSYIRRKHG 629

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +EK   +HP + P+L  T GV+IYQEQ+MQIA  ++G+SL +AD+LRRA+ KK KE +D+
Sbjct: 630  EEKAAYLHPDLAPILAPTYGVLIYQEQIMQIAAKIAGFSLGKADLLRRAVAKKKKEILDQ 689

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+  FI G  + G  ++ A ++++++ +FADYGFN+SHA AY+++SYQ A++K HYP+ F
Sbjct: 690  QRNAFIKGCMEKGYDESFANDLYDMIVRFADYGFNRSHAVAYSMLSYQLAYLKAHYPLYF 749

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             AA +T  + + EK+  +  +ARQ  I+++PPSVN     F V   +I YSLAA+K VG 
Sbjct: 750  YAALLTSVIGDEEKVALYVYEARQKRIELLPPSVNQSRYSFSVEQGKIRYSLAAVKHVGA 809

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               + I++     PF    DFC R+  K +NR+ +ESLV +G  D FG  R  LL S+D 
Sbjct: 810  AAVKAIVQERKKGPFSDFFDFCVRLFGKGINRKTIESLVLSGCFDEFGVERAALLASIDV 869

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++AQ V         +         S K    +    +   +  +E+ +LG Y S HP
Sbjct: 870  ALEHAQLVGPYVEEGMFS-------DISLKPKYVEAPAFSLEEKLMHEKELLGVYVSPHP 922

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
               ++ + R  G +     +       ++    +  +++ +T+KG  + ++T S+ + E 
Sbjct: 923  TSAHRKMFRLAGARPVMSIIREKADRLVKAGVYIAQERKTRTKKGEEMSFLTISDESGEM 982

Query: 1028 EANFFP 1033
            +A  FP
Sbjct: 983  DAVAFP 988


>gi|57237020|ref|YP_178822.1| DNA polymerase III subunit alpha [Campylobacter jejuni RM1221]
 gi|57165824|gb|AAW34603.1| DNA polymerase III, alpha subunit [Campylobacter jejuni RM1221]
 gi|315058181|gb|ADT72510.1| DNA polymerase III alpha subunit [Campylobacter jejuni subsp. jejuni
            S3]
          Length = 1200

 Score =  991 bits (2563), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1058 (36%), Positives = 593/1058 (56%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++            F     + A++  L +KK+F D
Sbjct: 118  INKKLLEDY-SEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
            ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237  LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 296  --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                K+ + I  EE  E                GL+ RL     +K    ++Y+QRL+ E
Sbjct: 297  REYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLKERLKFIDESKH---EEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +   A   + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDA-AYEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R    +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKNIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRVKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    K        +   E+ +LG Y SGHPLD +   +  +      E         
Sbjct: 953  VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLEFEGLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|240079974|ref|ZP_04724517.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            FA19]
 gi|268596113|ref|ZP_06130280.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
 gi|268549901|gb|EEZ44920.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
          Length = 1144

 Score =  991 bits (2563), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1033 (37%), Positives = 578/1033 (55%), Gaps = 32/1033 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            P+    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PVGAADVWIGNPNAPDK----------PFRAMLVIRNDAGYLRLSELLTEAYVGQDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDTFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F++ +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDCLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQANRGRVIEYVREKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +   P+SL          +  L     D L+ +++KLE L R    HA G++I    +S 
Sbjct: 470  EANKPLSLDDAMKAQPQIQELLEAEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISD 529

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSL 600
              P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +    G  VD+  
Sbjct: 530  YSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTAGDIVDVGK 589

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI  
Sbjct: 590  IPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPD 649

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGKK
Sbjct: 650  FVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKK 708

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+K
Sbjct: 709  KPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLK 768

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSL 839
             HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +I Y+L
Sbjct: 769  AHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMKIRYAL 828

Query: 840  AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D    +R
Sbjct: 829  GAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNR 888

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              LL ++D     A   +K        +F   +      + L    + + S +   E+ V
Sbjct: 889  AMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLAEEKTV 945

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +GFY SGHP   Y   +R++              +++RLA  V + +    ++G  I +V
Sbjct: 946  IGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAFV 1001

Query: 1019 TFSEPAKEYEANF 1031
            +  + + + E   
Sbjct: 1002 SLEDSSGQAEIMV 1014


>gi|29832685|ref|NP_827319.1| DNA polymerase III subunit alpha [Streptomyces avermitilis MA-4680]
 gi|29609805|dbj|BAC73854.1| putative DNA polymerase III alpha subunit [Streptomyces avermitilis
            MA-4680]
          Length = 1179

 Score =  991 bits (2563), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1070 (32%), Positives = 544/1070 (50%), Gaps = 53/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA++D  NL  A +F   A  
Sbjct: 1    MSKPP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHTAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  +   G   L +
Sbjct: 60   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANRTGLHNLFK 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGELQTRLRLGQFDEALKSAAEY 178

Query: 175  KKLF-GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +++F  DR ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QEIFGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYANEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVH- 288
             +     +S  DR R     +YLK+  EM +I S     E   NT+ +A +         
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCANTLLVAEQIDTSGMFEA 298

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P+F   E       E    + +   G+E R   G         D +++ ++E++VI
Sbjct: 299  KNLMPKFDIPEGF----TEVTWFQEEVRRGMERRFPGGV------PDDRQKQAEYEMDVI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VADFI WAKK  I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFL
Sbjct: 349  IQMGFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  P
Sbjct: 409  NPERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y+  DRL K +P D     + L  I D S          R     +P V ++++ ++ +E
Sbjct: 469  YAMGDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRAMYENEPDVKKVIDTAKGVE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   +G+ +DL  +P DD +T+ LL    TLG+FQ +   MR  L  M+PD
Sbjct: 589  TIMDDAVKMVKSNKGIDLDLLSLPLDDPKTFELLQRGETLGVFQFDGGPMRSLLRLMKPD 648

Query: 639  CIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLID----PMLKETQGVIIYQ 692
              EDI A+ +LYRPGP  +D+   Y  RKNG ++I  IH  ++     +L  T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHKELEEPLQEVLAVTYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  +E+ K    F  GA K G S      ++++
Sbjct: 709  EQVQKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFVLFQEGAQKKGYSDEAIQALWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H+AAY ++SY TA++K +YP E++A  +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAGLLTSVKDDKDKSAVYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             I+++PP VN    +F   GD+ I + L+A++ VGT     I+++  A   + S  D+  
Sbjct: 829  GIKVLPPDVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIKSRKAKGKYASFPDYLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +V++   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F   
Sbjct: 889  KVEAVACNKRTTESLIKAGAFDTMGHTRKGLTAQFEPMIDNVVQVKRKEAEGQFDLFGGM 948

Query: 931  KGTFSDKITLEK-----FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                SD+                +     E+ +LG Y S HPL   + +L      G  +
Sbjct: 949  GEEESDEPGFGLDVVFTDDEWEKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQ 1008

Query: 986  SV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1009 LTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFP 1058


>gi|167005356|ref|ZP_02271114.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni
            81-176]
          Length = 1169

 Score =  991 bits (2562), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1058 (36%), Positives = 594/1058 (56%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++            F     + A++  L +KK+F D
Sbjct: 118  INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
            ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237  LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLDLNLGNPTPPNFKFT 296

Query: 296  --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                K+ + I  EE  E                GLE RL     +K    ++Y+QRL+ E
Sbjct: 297  REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLKFIDESKH---EEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +   A   + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDA-AYEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R    +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    K        +   E+ +LG Y SGHPLD +   +  +      +  +      
Sbjct: 953  VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|318057575|ref|ZP_07976298.1| DNA polymerase III subunit alpha [Streptomyces sp. SA3_actG]
 gi|318078654|ref|ZP_07985986.1| DNA polymerase III subunit alpha [Streptomyces sp. SA3_actF]
          Length = 1181

 Score =  991 bits (2562), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1072 (32%), Positives = 545/1072 (50%), Gaps = 55/1072 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F HL VH+ YSLL+GA  L ++           IA++D  NL  A +F  +A  
Sbjct: 1    MSAKTPFTHLHVHTQYSLLDGAARLKDMFQACNEMGMTHIAMSDHGNLHGAYDFFHQAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  + + G   L +
Sbjct: 61   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFK 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +         + A K    +
Sbjct: 121  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQPEEALKAAADY 179

Query: 175  KKLF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  DR ++ L  H    +      ++++     +P + TN+S +    +  AHD L+
Sbjct: 180  QDIFGKDRYFLELMDHGIDIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHESVAHDALL 239

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHA 289
             +     +S  DR R     +YLK   EM +I S     E   NT+ +A +         
Sbjct: 240  CIQTGKNLSDPDRFRFDGTGYYLKTTDEMYAIDSSDAWQEGCRNTLLVAEQIDTTGMFEK 299

Query: 290  -PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P+F   +       E    + +   G+E R   G         D +++ ++E++VI
Sbjct: 300  RDLMPKFEIPDGF----TEITWFQEEVRRGMERRYPAGV------PDDRQKQAEYEMDVI 349

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFL
Sbjct: 350  IQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFL 409

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  P
Sbjct: 410  NPERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYP 469

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIA--------DDSRFREARLADPSVDRLLEISQKLE 519
            Y+  DR+ K +P D     + L  I         +    R     +P V ++++ ++ +E
Sbjct: 470  YAMGDRITKAMPADVLGKGIDLDGITNPTHPRYSEAGEVRGMYENEPDVKKVIDTAKGVE 529

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++   P+    P++     ++ +TQ++    E  GL+K DFLGL+ L
Sbjct: 530  GLVRQMGVHAAGVIMSSEPIIDHAPVWVRHTDNVTITQWDYPQCESLGLLKMDFLGLRNL 589

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   +G ++DL  IP DD +TY LL    TLG+FQ +   MR  L  M+PD
Sbjct: 590  TIMDDAVKMVKSNKGRELDLLAIPLDDPKTYDLLCRGDTLGVFQFDGGPMRSLLRLMKPD 649

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI A+ +LYRPGP+       Y  RKNG+++I  IHP ++  LKE    T G+I+YQ
Sbjct: 650  NFEDISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEVLGLTYGLIVYQ 709

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  +E++K    F +GA KNG S      ++++
Sbjct: 710  EQVQKAAQIVAGYSLGEADILRRVMGKKKADELEKNFVLFQAGARKNGYSDEAIQALWDV 769

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+ 
Sbjct: 770  LVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAAVLTSVRDDKDKSAVYLNECRRM 829

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             I+++PP VN    +F   GD+ I + L A++ VG      I+ +  A   + S  D+  
Sbjct: 830  GIRVLPPDVNESLANFAAQGDDVILFGLTAVRNVGQNVVDSIIRSRKAKGKYASFPDYLD 889

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--- 927
            +V++   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F   
Sbjct: 890  KVEAVVCNKRTTESLIKAGAFDQLGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGM 949

Query: 928  ----AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                  ++  F   +T         S     E+ +LG Y S HPL   + +L      G 
Sbjct: 950  GDDDGKDEPGFGLDVTFGD-DEWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGI 1008

Query: 984  EESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +        G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1009 GQLTGGDFGDGAVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1060


>gi|118469839|ref|YP_887493.1| DNA polymerase III subunit alpha [Mycobacterium smegmatis str. MC2
            155]
 gi|118171126|gb|ABK72022.1| DNA polymerase III alpha subunit [Mycobacterium smegmatis str. MC2
            155]
          Length = 1184

 Score =  991 bits (2562), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1067 (31%), Positives = 535/1067 (50%), Gaps = 51/1067 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S SFVHL  H+ YS+L+GA  +  +L +    + PAI +TD  N+F A EF   A  AG
Sbjct: 8    SSGSFVHLHNHTEYSMLDGAAKITPMLAEAQRLEMPAIGMTDHGNMFGASEFYNSATKAG 67

Query: 67   IQPIIGCQLDIDMQDNLK----------MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            I+PIIG +  I                       +       + ++   A G + L +L 
Sbjct: 68   IKPIIGIEAYIAPGSRFDTKRVTWGDPGQKGDDVSGSGAYTHMTMVAENATGLRNLFKLS 127

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S      Q  +  R+    + E   EG+I  TG  SG +         + A +    +++
Sbjct: 128  SLASFEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHEREALEAAAKWRE 186

Query: 177  LF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            +F  +  ++ L  H    +R     ++++     +P +ATN+  +++ E    H+ L+ V
Sbjct: 187  IFGPENFFLELMDHGLDIERRVREGLLEIGRKLGIPPLATNDCHYVTREAARNHEALLCV 246

Query: 235  AHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPI- 291
                 +S   R +   D ++LK+  EM +++ S +P A ++T+ I  R      V  P  
Sbjct: 247  QTGKTLSDPTRFKFDGDGYFLKSAEEMRALWDSQVPGACDSTLLIGERVQSYADVWEPRD 306

Query: 292  -LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             +P F   E  D    + + L ++  AGLE R   G +      ++Y  R ++E+ VI  
Sbjct: 307  RMPVFPVPEGHD----QASWLTHEVKAGLERRFRGGPV-----PEEYTTRAEYEIKVICD 357

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              F  YFLIVAD I +A+   I VGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP
Sbjct: 358  KGFPSYFLIVADLINYARSVGIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNP 417

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468
            +R S PD DIDF   RR E++RY  N++G ERVAQ+ITFG+++ KAAL+D  R    Q  
Sbjct: 418  ERPSAPDIDIDFDDRRRGEMLRYAANRWGSERVAQVITFGTIKTKAALKDSARVNFGQPG 477

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIADD--------SRFREARLADPSVDRLLEISQKLE 519
            ++  DR+ K +P    A  + L  I D         +  R     DP V  + E ++ LE
Sbjct: 478  FAIADRITKALPPPIMAKDIPLSGITDPNHERYKEAAEVRGLIDTDPDVRTIYETARGLE 537

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R+A  HA  +++   PL   +P+++  +    +T ++    E  GL+K DFLGL+ L
Sbjct: 538  GLVRNAGVHACAVIMSSEPLIDAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNL 597

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   RG+ +DL  +P DD   Y LL+   TLG+FQL+   MR  L  MQP 
Sbjct: 598  TIIGDAIANIKANRGIDLDLETLPLDDPAAYELLSRGDTLGVFQLDGGPMRDLLRRMQPT 657

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQ 692
               DI+A+++LYRPGP+       Y +RKNG++ I  IHP ++     +L ET G+I+YQ
Sbjct: 658  GFNDIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKDILAETYGLIVYQ 717

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQ+M IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++ 
Sbjct: 718  EQIMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFKEGMTANGFSEGAVKALWDT 777

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+ 
Sbjct: 778  ILPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRRL 837

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871
             I ++PP VN    +F    + I + L AI+ VG      +++       F    D+ ++
Sbjct: 838  GITVLPPDVNESEHNFASVGDDIRFGLGAIRNVGANVVSSLIKTRTEKGKFTDFSDYLNK 897

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            +D    N++V ESL+ AGA D  G+ R  L     +        +K       ++F   +
Sbjct: 898  IDITACNKKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGGE 957

Query: 932  GTFSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987
             T +D    I +          +   E+ +LG Y SGHPL+    +L           + 
Sbjct: 958  DTGTDAVFTIKVPD-EEWEDKHKLALEREMLGLYVSGHPLNGVAHLLANQVDTQIPAILD 1016

Query: 988  -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    + +  ++ S  ++  + G         +     E  FFP
Sbjct: 1017 GDVANDAQVLVGGILASVNRRVNKNGLPWASAQLEDLTGGIEVLFFP 1063


>gi|42520619|ref|NP_966534.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of
            Drosophila melanogaster]
 gi|42410358|gb|AAS14468.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of
            Drosophila melanogaster]
          Length = 1109

 Score =  991 bits (2562), Expect = 0.0,   Method: Composition-based stats.
 Identities = 466/1025 (45%), Positives = 658/1025 (64%), Gaps = 45/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS YSLLE ++ +  ++     ++ PA+AITD+ NLF +LEF++ A + GIQ I
Sbjct: 2    FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFAEYAASRGIQLI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-V 129
            IGC + +   +                 I+LL    +GY  L+ LVS  +   +      
Sbjct: 62   IGCNIIVKHSE-------------QNLPILLLAKNEQGYTNLVTLVSESFRKRKNNSDIP 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L  + + GLI LTG   G + +       +  EK L      F   LYV LQRH
Sbjct: 109  YVDFDELLNL-STGLIALTG---GSLAQLLLGQDKETVEKLLSA----FNGHLYVELQRH 160

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E  ++  AY   +PLVATN+  F +  DYEA+D+L  ++  +   + +R ++
Sbjct: 161  GLNKELELEEALIDFAYQRNIPLVATNDVFFPNRSDYEAYDILTCISEGSYALENNRKKL 220

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T +HY K+ +EM  +FSD+PEA+ NT+ IA+RCS++ +   PILP+F  +E     K E 
Sbjct: 221  TTEHYFKSVAEMEELFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCREN----KTEN 276

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             ELR +AVAGLE R+A          + Y  RL++EL+VI  M ++GYFLIV+DFI+W+K
Sbjct: 277  EELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSK 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N IPVGPGRGSGAGS+ A+ L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD
Sbjct: 334  ANGIPVGPGRGSGAGSIVAWGLQITDLDPIKFGLIFERFLNPDRVSMPDFDIDFCQEKRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI YVQ KYG   VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+
Sbjct: 394  LVIDYVQKKYG--YVAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVT 451

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L QAI  D   ++ R +D  + +LL+IS +LEG+YRH STHAAGIVI D+ L   VP+Y 
Sbjct: 452  LSQAIEFDQNLQKERDSDEVIAKLLDISLRLEGIYRHVSTHAAGIVICDQKLENFVPVYY 511

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D  S LP+TQ++MK++EKAGLIKFDFLGL TLTL+      + + G K+D+S +P +D +
Sbjct: 512  DPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDGKKIDISSVPLNDQK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L++  ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  RK+G
Sbjct: 572  TYEILSSGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             EK   IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEMDK
Sbjct: 632  LEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEMDK 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+E FI GA+KNG+    A  IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+EF
Sbjct: 692  QRELFIQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLEF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A M L +D+ +K+  F   A+   + ++ P +N    +F + D RI Y +AA++ VG 
Sbjct: 752  FTALMNLNIDDRDKLNLFYHAAKFSGVTVLSPDINNSQAEFSIEDERIRYGIAALRNVGF 811

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +    I+   +      + +F        +N+R LESL+ +GA D    +R QL +S+D 
Sbjct: 812  SIVEGIVNVRSSAC-KDIWEFIQ-NSGHIINKRALESLIKSGAFDSVHKNRKQLYESMDT 869

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  +A   ++++ +    +F         K  LE     +   + E+E   LGFY + HP
Sbjct: 870  LIYFANKNKQDKESSQAALFGSLDVL---KPKLENVEDFDEEEKLEHELFSLGFYLTNHP 926

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L+ ++ +L K+ I    E          + A ++++ + + + +G R   +T S+P    
Sbjct: 927  LEKFRTLLEKLNIGFIGE------NRTAKTAGVILNARMRTSERG-RFVILTLSDPHNVS 979

Query: 1028 EANFF 1032
            E  F+
Sbjct: 980  EIAFY 984


>gi|86149829|ref|ZP_01068058.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni
            CF93-6]
 gi|88596922|ref|ZP_01100158.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni
            84-25]
 gi|218562357|ref|YP_002344136.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni
            NCTC 11168]
 gi|14194692|sp|Q9PPI9|DPO3A_CAMJE RecName: Full=DNA polymerase III subunit alpha
 gi|85839647|gb|EAQ56907.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni
            CF93-6]
 gi|88190611|gb|EAQ94584.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni
            84-25]
 gi|112360063|emb|CAL34855.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
            NCTC 11168]
 gi|284925974|gb|ADC28326.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni
            IA3902]
 gi|315930589|gb|EFV09621.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni
            305]
          Length = 1200

 Score =  991 bits (2562), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1058 (36%), Positives = 594/1058 (56%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGIEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++            F     + A++  L +KK+F D
Sbjct: 118  INKKLLEDY-SEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
            ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237  LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 296  --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                K+ + I  EE  E                GLE RL     +K    ++Y+QRL+ E
Sbjct: 297  REYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLEERLKFIDESKH---EEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +   A   + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDA-AYEKEPKIKEFIDRHPKGLEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R    +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    K        +   E+ +LG Y SGHPLD +   +  +      +  +      
Sbjct: 953  VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|59800539|ref|YP_207251.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae FA
            1090]
 gi|240013392|ref|ZP_04720305.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            DGI18]
 gi|240120463|ref|ZP_04733425.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            PID24-1]
 gi|59717434|gb|AAW88839.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae FA
            1090]
          Length = 1144

 Score =  991 bits (2561), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1033 (37%), Positives = 578/1033 (55%), Gaps = 32/1033 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
            P+    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64   PVGAADVWIGNPNAPDK----------PFRAMLVIRNDAGYLRLSELLTEAYVGQDRNIH 113

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114  HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDTFYLELQ 173

Query: 188  RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R   R       S  V+LA    LP+VAT+ + F++ +D+ AH+  + +A   V++ K R
Sbjct: 174  RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234  PRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293  ---DDCLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQ 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350  DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410  FCQANRGRVIEYVREKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +   P+SL          +  L     D L+ +++KLE L R    HA G++I    +S 
Sbjct: 470  EANKPLSLDDAMKAQPQIQELLEAEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISD 529

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSL 600
              P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +    G  VD+  
Sbjct: 530  YSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTAGDIVDVGK 589

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI  
Sbjct: 590  IPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPD 649

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGKK
Sbjct: 650  FVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKK 708

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+K
Sbjct: 709  KPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLK 768

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSL 839
             HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    + +I Y+L
Sbjct: 769  AHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKIRYAL 828

Query: 840  AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D    +R
Sbjct: 829  GAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNR 888

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              LL ++D     A   +K        +F   +      + L    + + S +   E+ V
Sbjct: 889  AMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLAEEKTV 945

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +GFY SGHP   Y   +R++              +++RLA  V + +    ++G  I +V
Sbjct: 946  IGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAFV 1001

Query: 1019 TFSEPAKEYEANF 1031
            +  + + + E   
Sbjct: 1002 SLEDSSGQAEIMV 1014


>gi|86141808|ref|ZP_01060332.1| DNA polymerase III, alpha subunit [Leeuwenhoekiella blandensis
            MED217]
 gi|85831371|gb|EAQ49827.1| DNA polymerase III, alpha subunit [Leeuwenhoekiella blandensis
            MED217]
          Length = 1460

 Score =  991 bits (2561), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1079 (32%), Positives = 557/1079 (51%), Gaps = 65/1079 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------SQKAC 63
             FVHL  HS +S+L+   S+++++      + PA+ ITD  N+  A  F        KA 
Sbjct: 260  DFVHLHNHSQFSILQSTASVHDLVAAAKKHKMPAVGITDMGNMMGAFHFVKALTAHNKAA 319

Query: 64   --------AAGIQP-IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
                     AG +P     +  +  + N+   +  K+       IV L     GY  L +
Sbjct: 320  QKKNDELLEAGEEPTETIIKPIVGAELNVCQDHTNKSQKDNGYQIVFLAKNKRGYHNLAK 379

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            + S  Y  D      RI    + E   E +I+LTG   G +         + AE+ LL +
Sbjct: 380  MASLAYT-DGFYYVPRIDRK-IVERYKEDIIVLTGNLYGEVPSKVLNVGEKQAEEALLWW 437

Query: 175  KKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            K+ FGD LY+ + RH   D  R +Q +++ +  H++ LVATNN+ ++ +ED  AHD+L+ 
Sbjct: 438  KETFGDDLYIEVMRHGQEDEDRVNQTLIEFSKKHDVKLVATNNTFYIDKEDAPAHDILLC 497

Query: 234  VAHSTVVSQKDRPRV-------TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            V     V+                ++Y K+  EM ++F+DLPEA+ N  EI  +    + 
Sbjct: 498  VKDGEKVATPKGRGRGYRFGLDNEEYYFKSADEMKALFTDLPEAISNVDEIVDKVEAFVL 557

Query: 287  VHAPILPRFIEKEC--------DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                +LP F   E         D  ++ E   L++    G   R  +          D  
Sbjct: 558  ARDVLLPAFTIPEEFQFEEDKQDGGKRGENKYLKHITFEGARQRYPE-------ITPDIE 610

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL+FEL+VI    + GYFLIV DFI+ A+   + VGPGRGS AGS  AY L IT+IDP+
Sbjct: 611  ERLNFELSVIENTGYPGYFLIVEDFIREARNMGVSVGPGRGSAAGSAVAYCLGITNIDPI 670

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
            ++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV +KYG  +VAQIIT+G++ AK+++
Sbjct: 671  KYDLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIDKYGANQVAQIITYGTMAAKSSI 730

Query: 459  RDVGRALQMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLAD 505
            RD  R L +P S  DR+ KLIPN             D       + +   +        D
Sbjct: 731  RDTARVLDLPLSDADRIAKLIPNMSKLAKIFGQSEADLKKKFRSEDLVKVNELLNLAEGD 790

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
                + L  +++LEG  R+   HA G++I    ++  VP+     SDL VTQF+   +E+
Sbjct: 791  DLEGQTLRQARQLEGSVRNTGIHACGVIITPDDITNFVPVSIAKDSDLYVTQFDNSVVEE 850

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            AGL+K DFLGLKTLTL++ ++  +  +  + +D    P DD +TY L     T+GIFQ E
Sbjct: 851  AGLLKMDFLGLKTLTLIKDTVKLVKHKHGIDLDPDSFPLDDQKTYELFQRGDTVGIFQYE 910

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S GM++ ++ ++P   ED+IA+ +LYRPGP++ I  +  RK+G+E+I    P ++  L+E
Sbjct: 911  SPGMQKHMQALKPTVFEDLIAMNALYRPGPMEYIPSFIARKHGEEEIQYDLPAMEEYLEE 970

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+ +YQEQVM ++Q L+G+S  +ADVLR+AMGKKI   ++K K +F+ G  KNG  + 
Sbjct: 971  TYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKIFALLEKLKPQFLDGGEKNGHDRK 1030

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            I   I++    FA Y FNKSH+  YA I+YQTA+ K HYP E++AA ++  M++++++  
Sbjct: 1031 ILEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYCKAHYPAEYMAAVLSNNMNDIKQVTF 1090

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
            F ++ ++  ++++ P VN     F V     + + + A+KGVG    + I+E   D P+ 
Sbjct: 1091 FMEECKRMGLEVLGPDVNESFRKFTVNDRGAVRFGMGAVKGVGANAVKTIVENREDGPYR 1150

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWV 915
            S+ D   R+D +  N++  ESL  AG  D F    R Q  +        L+   KY    
Sbjct: 1151 SVFDLAKRIDLRAANKKAFESLALAGGFDSFMATHRAQYFKDEGDGITFLEKAVKYGAKF 1210

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            ++N  +   ++F         +  +       +  +   E+ V+G Y SGHPLD +K  +
Sbjct: 1211 QENENSAQVSLFGEASEVQIPEPVVPPCEEWGTMEKLRREKEVVGIYISGHPLDDFKLEM 1270

Query: 976  RKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +   +       + +  ++   Q + ++ G      T  +  + +E   F
Sbjct: 1271 DNFCNGKISDFNNLEMHLNRELTIGGVISDVQHRVSKNGKGWAAFTVEDFDESFEFRMF 1329


>gi|150010065|ref|YP_001304808.1| DNA polymerase III subunit alpha [Parabacteroides distasonis ATCC
            8503]
 gi|262382633|ref|ZP_06075770.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_33B]
 gi|298374425|ref|ZP_06984383.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_19]
 gi|149938489|gb|ABR45186.1| DNA polymerase III alpha subunit [Parabacteroides distasonis ATCC
            8503]
 gi|262295511|gb|EEY83442.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_33B]
 gi|298268793|gb|EFI10448.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_19]
          Length = 1267

 Score =  991 bits (2561), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1147 (32%), Positives = 579/1147 (50%), Gaps = 134/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-------- 61
             F+HL VH+ YSLL+G  S++ ++DK   D   AIA+TD   +F   EF  K        
Sbjct: 3    PFIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVSKKNSKP 62

Query: 62   -------------------------------------ACAAGIQPIIGCQLDIDMQDNLK 84
                                                 A A+  +PIIGC+       N +
Sbjct: 63   LGIIKDSEKELKPLLAKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYCAR--NGR 120

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
             +        +   +++L     GY+ LI++VS  +         RI    L++   E L
Sbjct: 121  HSKLASQDDRSGWHLIVLAKNKNGYKNLIKMVSLSWTEG-FYGRPRIDKELLEKYH-EDL 178

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD----------- 193
            I+ +    G I +         AE+ +  FK LFG+  Y+ +QRH  +D           
Sbjct: 179  IICSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADCTIFPHQ 238

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +     +++LA+ H + L+ATN+  F++ +D EAHD L+ ++    +    R R +   +
Sbjct: 239  QEVNKVLIELAHKHNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMRYSKQEW 298

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K  +EM +IF+D+PEAL NT+EIA +  F      PI+P F   E    ++        
Sbjct: 299  MKTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESYRQKLTE 358

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L      G +      
Sbjct: 359  HDLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAKELYGD- 417

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                     + ++RL+FEL+++  M F GYFLIV DFI+ A++   + VGPGRGS AGS 
Sbjct: 418  -----PLNDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSA 472

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D DF  D R EV+R+V  KYG ERVA 
Sbjct: 473  VAYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAH 532

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN---DPAHPVSLQAIADDSRFREAR 502
            IIT+G++  K+A++DV R  ++P S+ +RL KL+P+   D        AI      +EA 
Sbjct: 533  IITYGTMATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVPELKEAA 592

Query: 503  L-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQ 557
               DP     L+ +Q LEG  R+   HA G++IG   +S +VP+     +D   ++ VTQ
Sbjct: 593  NGNDPLARDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQ 652

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKG 616
            +    IE+ GLIK DFLGLKTL++++++++ +        D+  I  +D +TY L     
Sbjct: 653  YEGSVIEETGLIKMDFLGLKTLSIIKEAIENVKLTTGHDLDIDHISLEDPKTYKLYCDGK 712

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            T G FQ ES+GM++ L+ +QP   ED+IA+ +LYRPGP+D I  +  RK GKE+I    P
Sbjct: 713  TTGTFQFESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIP 772

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+ E+M+  K +F++G 
Sbjct: 773  VMERYLKDTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGG 832

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
              NG  +     I+    KFA Y FNKSHA  Y+ ++YQTA++K ++P E++AA ++  +
Sbjct: 833  QANGYKEETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANFPSEYMAAVLSRSL 892

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIME 855
             N+  I KF  + +   IQ++ P VN   + F V  N+   + L A+KGVG +  ++I+E
Sbjct: 893  SNITDITKFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGESAVQNIIE 952

Query: 856  AS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDN 907
                + P+ S+ DF  RV+    N++ +ES+  AGA D FG  R Q           LD 
Sbjct: 953  ERKKNGPYKSIFDFVERVNLTACNKKNIESMALAGAFDNFGIQREQFFTDSGKGELFLDT 1012

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + +++    ++F  +      K  + +    +   R   E+ ++G Y S HP
Sbjct: 1013 LVRYGNKYQMDKSTAVNSLFGGDALIAIAKPEIPQCERWSDLERLNKEKELVGIYLSAHP 1072

Query: 968  LDVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y+ IL+ +   G  E     T++G  + L  +V   ++  T+ G   G +   +   
Sbjct: 1073 LDEYRIILKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTKNGKPYGILKIEDFTG 1132

Query: 1026 EYEANFF 1032
              E   F
Sbjct: 1133 SGEIPLF 1139


>gi|257453752|ref|ZP_05619033.1| DNA polymerase III subunit alpha [Enhydrobacter aerosaccus SK60]
 gi|257448844|gb|EEV23806.1| DNA polymerase III subunit alpha [Enhydrobacter aerosaccus SK60]
          Length = 1189

 Score =  991 bits (2561), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1060 (36%), Positives = 602/1060 (56%), Gaps = 67/1060 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVH  +H+ +S+ +  + +  ++    AD Q A+AI+D +NL++ ++F +    AGI+P
Sbjct: 2    AFVHFGIHTEFSITDSIVRIKALVKAAKADNQLALAISDLSNLYATVKFYKACLDAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ ++                   ++ LL S   GY+ L  +VS+ ++  Q     
Sbjct: 62   IIGSEVWLENDS---------------TTVTLLASNQVGYKNLTNIVSKGFVDGQVMGKP 106

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+ E  +EG+I+L       + +A      + A+  L  ++  F DR+Y  ++R 
Sbjct: 107  IIQRDWIFE-RSEGVIVLFT-EKSDVGQAMLSAHPEKADSLLQQWQTTFADRVYFAIKRT 164

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  +     Q ++++   ++P++A N+  FL+E+D+EAH+  + +A+S V++  +RPR 
Sbjct: 165  QRANEDRFIEQAIRMSNAFDVPIIAHNDVRFLTEDDFEAHEARVCIANSQVLADPNRPRD 224

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +P+ YLK + +M ++FSD+P  ++NT+++A+RC+ I+ +    LP F   E D I    
Sbjct: 225  YSPEQYLKTQDKMTALFSDMPAVIDNTLDLAKRCNVIIHMGHHDLPEFPIPEGDTI---- 280

Query: 308  ENELRNKAVAGLEVRLAQGAIAK------GYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            E   R  A  GLE RL +    +          + Y +RL+FEL  I  M F GYFLIV 
Sbjct: 281  ETFFRRTAQEGLEKRLEKLYPIEKRDDSWAEKRKPYDERLEFELTTILNMGFPGYFLIVM 340

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+W+K N++PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 341  DFIRWSKANDVPVGPGRGSGAGSLVAYSLNITDLDPLEYDLLFERFLNPERVSMPDFDVD 400

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RD VI YV  KYG E V+QIITFG++ AKA +RDV R     Y   D++ KLIP 
Sbjct: 401  FCIEGRDRVIDYVAQKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKISKLIPK 460

Query: 482  DPAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
             P   +   A+  + + ++             + + E++ +LEG+ R    HA G++I  
Sbjct: 461  TPGISL-ADAVEAEPQLKDLLNNPDNMDYEDANEIWEMAVRLEGITRGVGKHAGGVLIAP 519

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592
              ++    +Y D     PV+QF+   +E  GL+KFDFLGL+ LT++  ++  +  R    
Sbjct: 520  TKITDYSAIYCD-EEGHPVSQFDKDDVEAVGLVKFDFLGLRNLTVINAAVKNINARRAKE 578

Query: 593  -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +DL  +P DD  TY LL    T  +FQLES+GM++ L  ++P  IED+IA+ +LYR
Sbjct: 579  QQPPLDLETLPLDDKPTYSLLQDAHTTAVFQLESTGMKKYLAKLKPTNIEDVIAMCALYR 638

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+D  +V  Y +RK+G+E+++  H  ++P+L+ T GVI+YQEQVMQI+Q ++GYSL  
Sbjct: 639  PGPLDAGMVDMYIDRKHGREEVIYDHDRLEPILENTYGVIVYQEQVMQISQAMAGYSLGG 698

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F+ GA   GI   +A  +F+L+ KFA YGFNKSH+AAY
Sbjct: 699  ADMLRRAMGKKKPEEMAKQRSIFVEGAIGQGIDDKLAGGVFDLMEKFAGYGFNKSHSAAY 758

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDF 828
             V++YQTA++K +YP EF+AA +T +M+N + +  F  D R  F +++  PSVN     F
Sbjct: 759  GVLAYQTAYLKHYYPAEFMAAVITSDMNNTDGVVFFINDCRENFGLKVENPSVNHSNWAF 818

Query: 829  -KVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
              +    I Y L  IKGVG      I+EA  A   F  L DFC RVD++K+N+R LE+LV
Sbjct: 819  VPINPTTIVYGLGGIKGVGEGAVESIVEARNAGGEFTDLYDFCRRVDTRKVNKRTLEALV 878

Query: 887  FAGALDCFGYS-------------RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             AG  D F                R  LL  L    + A+    N +    ++F+  +  
Sbjct: 879  KAGCFDSFAPKLRPDLPADEAYHIRGALLAELPKAVQAAEQQRSNDSLGMIDLFSDIQEV 938

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
             +    L +  V   + R + E+  LG Y +GHP+D Y+  L++   K   +   T  G 
Sbjct: 939  TAP-PPLPREPVWTDAERLKGEKDTLGLYLTGHPIDSYRDELKRYTPKTLGDLSETSYGE 997

Query: 994  NIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
             +  A +++          G+R   +T  +     E + +
Sbjct: 998  TVFFAGLILDV-----ANFGNR-SVITLDDGTGRIEVSCY 1031


>gi|254821473|ref|ZP_05226474.1| DNA polymerase III subunit alpha [Mycobacterium intracellulare ATCC
            13950]
          Length = 1177

 Score =  991 bits (2561), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1067 (32%), Positives = 545/1067 (51%), Gaps = 50/1067 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S SFVHL  H+ YS+L+GA  +  +L ++   Q PA+ +TD  N+F A EF   A  
Sbjct: 1    MNHS-SFVHLHNHTEYSMLDGAAKIAPMLAEVDRLQMPAVGMTDHGNMFGASEFYNAATK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AGI+PIIG +  I                       +   +   + ++  T  G + L +
Sbjct: 60   AGIKPIIGVEAYIAPASRFDTRRILWGDPGQKSDDVSGSGSYTHMTMVAETPTGLRNLFK 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +         + A +    +
Sbjct: 120  LSSLASFEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHDREALESAAKW 178

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +++F  D  ++ L  H    ++     ++++     +P +ATN+  +++ +    H+ L+
Sbjct: 179  REIFGADNYFLELMDHGLSIEQRVRDGLLEIGRKLGIPPLATNDCHYVTRDAAHNHEALL 238

Query: 233  AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAP 290
             V     +S  +R +   D +YLK+ +EM  I+ D +P A ++T+ IA R     +V AP
Sbjct: 239  CVQTGKTLSDPNRFKFDGDGYYLKSAAEMRRIWDDEVPGACDSTLLIAERVQPYDEVWAP 298

Query: 291  I--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +P F   E  D    + + L ++ +AGL  R   G        QDY  R ++E+ VI
Sbjct: 299  RDRMPIFPVPEGHD----QASWLHHEVMAGLARRFPSGV------GQDYIDRAEYEIKVI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
                F  YFLIVAD I +A+  +I VGPGRGS AGS+ AYAL IT+IDP+   LLFERFL
Sbjct: 349  CDKGFPSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--Q 466
            NP+R S PD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAAL+D  R    Q
Sbjct: 409  NPERPSAPDIDIDFDDRRRGEMVRYAADKWGSDRVAQVITFGTIKTKAALKDSARIHYGQ 468

Query: 467  MPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQK 517
              ++  DR+ K +P    A  + L  I D +          R     DP V  + + ++ 
Sbjct: 469  PGFAIADRITKALPPPIMAKDIPLSGITDPAHERYKEAAEVRGLIETDPDVRTIYQTARG 528

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+
Sbjct: 529  LEGLIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLR 588

Query: 578  TLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT++  +LD +   RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQ
Sbjct: 589  NLTIIGDALDNIKANRGIDLDLESVPLDDGPTYELLGRGDTLGVFQLDGGPMRDLLRRMQ 648

Query: 637  PDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVII 690
            P    DI+A+++LYRPGP+       Y +RKNG++ I  IHP ++     +L ET G+I+
Sbjct: 649  PTEFNDIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLREILSETYGLIV 708

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQ+M IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     ++
Sbjct: 709  YQEQIMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALW 768

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            + +  FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R
Sbjct: 769  DTILPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCR 828

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFC 869
            +  I ++PP VN   V+F      I + L A++ VG      ++        F    D+ 
Sbjct: 829  KLGITVLPPDVNESLVNFASVGTDIRFGLGAVRNVGANVVGSLISTRNGKGKFTDFSDYL 888

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            +++D    N++V ESL+ AGA D  G++R  L     +        +K       ++F  
Sbjct: 889  NKIDIAACNKKVTESLIKAGAFDSLGHARKGLFLVHTDAVDSVLGTKKAEAIGQFDLFGG 948

Query: 930  EKGTFSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987
            + G      T++          +   E+ +LG Y SGHPL+    +L           + 
Sbjct: 949  DDGCTEAVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTQIPAILD 1008

Query: 988  -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    +R+  ++ S  ++  + G         +     E  FFP
Sbjct: 1009 GDVPNETQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1055


>gi|294787463|ref|ZP_06752716.1| DNA polymerase III, alpha subunit [Parascardovia denticolens F0305]
 gi|315226967|ref|ZP_07868755.1| DNA-directed DNA polymerase III alpha subunit [Parascardovia
            denticolens DSM 10105]
 gi|294484819|gb|EFG32454.1| DNA polymerase III, alpha subunit [Parascardovia denticolens F0305]
 gi|315121099|gb|EFT84231.1| DNA-directed DNA polymerase III alpha subunit [Parascardovia
            denticolens DSM 10105]
          Length = 1189

 Score =  991 bits (2561), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/1071 (31%), Positives = 545/1071 (50%), Gaps = 60/1071 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS L+GA+ +  ++       Q A+ ITD  N+  A E  + A  AGI+P
Sbjct: 8    SFVHLHNHTDYSTLDGAVPVKKMVAVAKDLGQKAVGITDHGNMHGAYEMWRTAVDAGIKP 67

Query: 70   IIGCQLDIDM---QDNLKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            IIG +  I     + +    + G         +   +   + +      G   L++  S 
Sbjct: 68   IIGIEAYITPGTARGDKTRVHWGTKEQHSDDVSANGSYTHMTMWAQDDTGLVNLLKASSV 127

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L     ++ R+    LQ    +G+I  TG  SG +         + A +     + +F
Sbjct: 128  ANLEGLMGKNPRMDRDILQTYH-QGIIATTGCPSGAVQTRLRLGQYKEALREAGELQDIF 186

Query: 179  -GDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
              +  YV +  H      R +Q ++++A     PLVATN+  +  E D  A D L+ +  
Sbjct: 187  GKENFYVEIMDHGLEIETRVTQDLLRIAKEIGAPLVATNDCHYGLESDAAAQDALLCINS 246

Query: 237  STVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP--ILP 293
             + ++  DR R     ++LK+  +M  +F + P+A +NT+EIA RC+ +   +     +P
Sbjct: 247  GSRLTDSDRFRFNGSGYFLKSAQQMRDLFKEFPQACDNTLEIAERCNVMFDDYEDGAFMP 306

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             F   E  D      +   +    GLE R   G        +D  ++ D+E  VI +M+F
Sbjct: 307  EFDCPEGWDAT----SLFLHDVEQGLEKRYPAGV------PEDVAKQADYECGVICQMQF 356

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+VAD+I WAK + + VGPGRGS AGS+ AYA+ IT++DP++  L+FERFLNP+R+
Sbjct: 357  CGYFLVVADYINWAKTHGVMVGPGRGSAAGSMVAYAMGITELDPIKHGLIFERFLNPERV 416

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            S+PD D+DF    R++V+RYV  KYG ++VAQ +T+G+++ K AL+D  R +   +   +
Sbjct: 417  SLPDIDVDFDPAGREKVLRYVTEKYGSDKVAQCVTYGTIKTKQALKDSARIMDYDFQMGE 476

Query: 474  RLCKLIPNDPA---------HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
             + K +P               ++ +   +   FR+    +P V ++ E ++ +EGL R 
Sbjct: 477  TMTKALPGAVGGKDISLHDIFDLTAKRYPEAQEFRDLYNENPDVQKITEEAKGIEGLIRQ 536

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HA   ++  +P++   P+ +        T F     E  GL+K DFLGL  LT++++
Sbjct: 537  TGVHACATIMASQPITNTSPLMKRT-DGTVTTTFEYHTCETLGLVKMDFLGLANLTVIKE 595

Query: 585  SLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++  +   G   +DL  IP DD  TY LL++  TLG+FQL+S GM+  L+ ++PD   DI
Sbjct: 596  AIKNIHDNGKGDIDLEKIPIDDKATYDLLSSGHTLGVFQLDSDGMQSLLKQLKPDNFNDI 655

Query: 644  IALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVMQ 697
             AL++LYRPGP+D  +   Y  RKNG ++I  IHP ++     +L ET G+I+YQEQV  
Sbjct: 656  SALIALYRPGPMDVDSHNNYAKRKNGLQEITPIHPELEKPLAQVLDETYGLIVYQEQVQS 715

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
             A++L+GYSL  ADVLRRAMGKK  E + K+K  F +G  ++G S+  A  ++++L  FA
Sbjct: 716  AARILAGYSLGRADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGYSEEAAQAVWDVLVPFA 775

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y FNK+H+AAY ++SY TA++KTHYPVEF+AA +  E  N +K   +  + R+ NI+++
Sbjct: 776  GYAFNKAHSAAYGLVSYWTAYLKTHYPVEFMAALLQGERSNKDKTALYLGECRRMNIKVL 835

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS----ADKPFDSLEDFCSRVD 873
            PP VN     +      I + L A++ VG      I+           F +  D+ +R+ 
Sbjct: 836  PPDVNESVGHYSAVGKDIRFGLGAVRNVGDKVVDAIVAERDKAGGKGKFVNFLDWINRMP 895

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             + LN+R +ESL+  GA D    +R  L             +++       ++FA  +  
Sbjct: 896  VEVLNKRTVESLIKGGAFDSIDPNRRALFTIHQTAIDQVIPLKRKEAEGQFDLFADSEED 955

Query: 934  FSDK--------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
             S          I++      +   +   E+ +LG Y S HPL     +L  +      +
Sbjct: 956  DSASAAALGDANISVPPIDEWDKKTKLNFEREMLGLYVSDHPLSGLASVLASLSDMSIAQ 1015

Query: 986  SVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +           I +A +V    ++ ++ G     VT  +     +A FF
Sbjct: 1016 LLNRAATMPEKAQITIAGLVTGVDRRVSKAGKPWAIVTLEDLEGSIQALFF 1066


>gi|256838875|ref|ZP_05544385.1| DNA polymerase III alpha subunit [Parabacteroides sp. D13]
 gi|256739794|gb|EEU53118.1| DNA polymerase III alpha subunit [Parabacteroides sp. D13]
          Length = 1267

 Score =  990 bits (2560), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1147 (32%), Positives = 579/1147 (50%), Gaps = 134/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-------- 61
             F+HL VH+ YSLL+G  S++ ++DK   D   AIA+TD   +F   EF  K        
Sbjct: 3    PFIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVSKKNSKP 62

Query: 62   -------------------------------------ACAAGIQPIIGCQLDIDMQDNLK 84
                                                 A A+  +PIIGC+       N +
Sbjct: 63   LGIIKDSEKELKPLLAKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYCAR--NGR 120

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
             +        +   +++L     GY+ LI++VS  +         RI    L++   E L
Sbjct: 121  HSKLASQDDRSGWHLIVLAKNKNGYKNLIKMVSLSWTEG-FYGRPRIDKELLEKYH-EDL 178

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD----------- 193
            I+ +    G I +         AE+ +  FK LFG+  Y+ +QRH  +D           
Sbjct: 179  IICSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADCTIFPHQ 238

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +     +++LA+ H + L+ATN+  F++ +D EAHD L+ ++    +    R R +   +
Sbjct: 239  QEVNKVLIELAHKHNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMRYSKQEW 298

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K  +EM +IF+D+PEAL NT+EIA +  F      PI+P F   E    ++        
Sbjct: 299  MKTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESYRQKLTE 358

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L      G +      
Sbjct: 359  HDLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAKELYGDP 418

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                     + ++RL+FEL+++  M F GYFLIV DFI+ A++   + VGPGRGS AGS 
Sbjct: 419  LD------DEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSA 472

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D DF  D R EV+R+V  KYG ERVA 
Sbjct: 473  VAYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAH 532

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN---DPAHPVSLQAIADDSRFREAR 502
            IIT+G++  K+A++DV R  ++P S+ +RL KL+P+   D        AI      +EA 
Sbjct: 533  IITYGTMATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVPELKEAA 592

Query: 503  L-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQ 557
               DP     L+ +Q LEG  R+   HA G++IG   +S +VP+     +D   ++ VTQ
Sbjct: 593  NGNDPLARDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQ 652

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKG 616
            +    IE+ GLIK DFLGLKTL++++++++ +        D+  I  +D +TY L     
Sbjct: 653  YEGSVIEETGLIKMDFLGLKTLSIIKEAIENVKLTTGHDLDIDHISLEDPKTYKLYCDGK 712

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            T G FQ ES+GM++ L+ +QP   ED+IA+ +LYRPGP+D I  +  RK GKE+I    P
Sbjct: 713  TTGTFQFESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIP 772

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+ E+M+  K +F++G 
Sbjct: 773  VMERYLKDTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGG 832

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
              NG  +     I+    KFA Y FNKSHA  Y+ ++YQTA++K ++P E++AA ++  +
Sbjct: 833  QANGYKEETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANFPSEYMAAVLSRSL 892

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIME 855
             N+  I KF  + +   IQ++ P VN   + F V  N+   + L A+KGVG +  ++I+E
Sbjct: 893  SNITDITKFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGESAVQNIIE 952

Query: 856  AS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDN 907
                + P+ S+ DF  RV+    N++ +ES+  AGA D FG  R Q           LD 
Sbjct: 953  ERKKNGPYKSIFDFVERVNLTACNKKNIESMALAGAFDNFGIQREQFFTDSGKGELFLDT 1012

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + +++    ++F  +      K  + +    +   R   E+ ++G Y S HP
Sbjct: 1013 LVRYGNKYQMDKSTAVNSLFGGDALIAIAKPEIPQCERWSDLERLNKEKELVGIYLSAHP 1072

Query: 968  LDVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y+ IL+ +   G  E     T++G  + L  +V   ++  T+ G   G +   +   
Sbjct: 1073 LDEYRIILKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTKNGKPYGILKIEDFTG 1132

Query: 1026 EYEANFF 1032
              E   F
Sbjct: 1133 SGEIPLF 1139


>gi|262202886|ref|YP_003274094.1| DNA polymerase III subunit alpha [Gordonia bronchialis DSM 43247]
 gi|262086233|gb|ACY22201.1| DNA polymerase III, alpha subunit [Gordonia bronchialis DSM 43247]
          Length = 1180

 Score =  990 bits (2560), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1067 (31%), Positives = 541/1067 (50%), Gaps = 50/1067 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL  H+ YS+L+GA  +  +  +       AI +TD  N+F A EF   A    I
Sbjct: 2    TDSFVHLHNHTEYSMLDGAAKVAPLFAEAKRLGMTAIGMTDHGNMFGASEFYNTAVKNDI 61

Query: 68   QPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIG +  +                   +   +       + ++   A G + L +L S
Sbjct: 62   KPIIGIEAYVAPASRFETKRVTWGTRDQKDDDVSGSGAYTHMTMVAENATGLRNLFKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +  Q  +  R+    + E   EG+I  TG  SG +         + A +    ++++
Sbjct: 122  LASIEGQLGKWARMDADIIAEYA-EGIIATTGCPSGEVQTRLRLGHEREALEAAAKWQEI 180

Query: 178  F-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  +  Y+ L  H    +R     ++++     +  + TN+  +++++  ++H+ L+ V 
Sbjct: 181  FGKENFYLELMEHGLEIERRVRDGLLEVGRKLGIKPLVTNDCHYVTKDHAKSHEALLCVQ 240

Query: 236  HSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQV--HAPI 291
                +S   R +   D +YLK+ +EM  ++  + P A +NT+EI  R      V  H   
Sbjct: 241  TGKTLSDPTRFKFDGDGYYLKSAAEMRELWDSVVPGACDNTLEIGERVQSYADVFTHRDR 300

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +P F   E +     ++  LR +   GL  R   GA       ++Y++R ++EL+VI +M
Sbjct: 301  MPVFPVPEGE----SQQTWLRKEVAKGLAERRFAGA----EVPREYQERANYELDVIIQM 352

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFL+V D I+ A++  I VGPGRGS AGS+ A+AL IT+IDP+   LLFERFLNP+
Sbjct: 353  GFPAYFLVVGDLIRHAQEVGIRVGPGRGSAAGSLVAWALGITNIDPIPHGLLFERFLNPE 412

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPY 469
            R+SMPD DIDF   RR E++RY  +++G ++VAQ+ITFG+++ KAA++D  R    Q  +
Sbjct: 413  RVSMPDIDIDFDDRRRGEMVRYATDRWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPGF 472

Query: 470  SQVDRLCKL---------IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            S  DR+ K          IP         +   + +  R     DP V ++ + +  LEG
Sbjct: 473  SIADRITKALPPPIMAKDIPVWGITDPDHERFNEAAEVRSLIETDPDVKKIYDTALGLEG 532

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R+A  HA  +++   PL+  +P++R  +    +T ++    E  GL+K DFLGL+ LT
Sbjct: 533  LIRNAGVHACAVIMSSEPLTDAIPVWRRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLT 592

Query: 581  LLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  +++ +   RG  +DL   P DD +TY LL    TLG+FQL+   MR+ L+ MQP  
Sbjct: 593  VIGDAIENIKINRGFDLDLDDAPLDDPKTYELLARGDTLGVFQLDGGAMRELLKRMQPTG 652

Query: 640  IEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQE 693
             EDI+A+++LYRPGP+       Y +RKNG++++  IHP +      +L +T G+I+YQE
Sbjct: 653  FEDIVAVLALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELAEPLKEILADTYGLIVYQE 712

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            Q+MQIAQ ++GYSL  AD+LRRAMGKK  E +  + E F +G   NG S      +++ +
Sbjct: 713  QIMQIAQKVAGYSLGRADILRRAMGKKKAEVLAAEFEGFEAGMKANGFSGPAIKALWDTI 772

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNKSHAA Y ++S+ TA++K +YP E++A  +T   D+ +K   +  D R+  
Sbjct: 773  LPFAGYAFNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAIYLADCRKLG 832

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV 872
            I ++PP VN    +F      I + LAAI+ VG+     I+ A  +   F S  D+  ++
Sbjct: 833  ITVLPPDVNESQRNFAAVGTDIRFGLAAIRNVGSGVVSSILAAREEKGKFTSFSDYLGKI 892

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D    N++V ESL+ AGA D   + R  L        +     +K       ++F    G
Sbjct: 893  DVTACNKKVTESLIKAGAFDSLAHPRKGLFLVHGEAVESVLGTKKAEAIGQFDLFGDAGG 952

Query: 933  TFSDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
                   +          ++  +   E+ +LG Y SGHPL   +  +           + 
Sbjct: 953  ADDTMAEVFAVKVPDEEWDTKHKLAIEREMLGLYVSGHPLSGVEHAIAAHTDTSITTLLE 1012

Query: 989  --TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G  I +  ++ S  ++  +KG     VT  +     E  FFP
Sbjct: 1013 GNIADGAQITIGGIISSVTRRVNKKGEPWAAVTLEDMVGGVEVYFFP 1059


>gi|301308097|ref|ZP_07214051.1| DNA polymerase III, alpha subunit [Bacteroides sp. 20_3]
 gi|300833567|gb|EFK64183.1| DNA polymerase III, alpha subunit [Bacteroides sp. 20_3]
          Length = 1267

 Score =  990 bits (2560), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1147 (31%), Positives = 579/1147 (50%), Gaps = 134/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-------- 61
             F+HL VH+ YSLL+G  S++ ++DK   D   AIA+TD   +F   EF  K        
Sbjct: 3    PFIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVSKKNSKP 62

Query: 62   -------------------------------------ACAAGIQPIIGCQLDIDMQDNLK 84
                                                 A A+  +PIIGC+       N +
Sbjct: 63   LGIIKDSEKELKPLLTKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYCAR--NGR 120

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
             +        +   +++L     GY+ LI++VS  +         RI    L++   + L
Sbjct: 121  HSKLASQDDRSGWHLIVLAKNKNGYKNLIKMVSLSWTEG-FYGRPRIDKELLEKYH-KDL 178

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD----------- 193
            I+ +    G I +         AE+ +  FK LFG+  Y+ +QRH  +D           
Sbjct: 179  IICSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADCTIFPHQ 238

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +     +++LA+ H + L+ATN+  F++ +D EAHD L+ ++    +    R R +   +
Sbjct: 239  QEVNKVLIELAHKHNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMRYSKQEW 298

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K  +EM +IF+D+PEAL NT+EIA +  F      PI+P F   E    ++        
Sbjct: 299  MKTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESYRQKLTE 358

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L      G +      
Sbjct: 359  HDLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAKELYGD- 417

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                     + ++RL+FEL+++  M F GYFLIV DFI+ A++   + VGPGRGS AGS 
Sbjct: 418  -----PLNDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSA 472

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D DF  D R EV+R+V  KYG ERVA 
Sbjct: 473  VAYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAH 532

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN---DPAHPVSLQAIADDSRFREAR 502
            IIT+G++  K+A++DV R  ++P S+ +RL KL+P+   D        AI      +EA 
Sbjct: 533  IITYGTMATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVPELKEAA 592

Query: 503  L-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQ 557
               DP     L+ +Q LEG  R+   HA G++IG   +S +VP+     +D   ++ VTQ
Sbjct: 593  NGNDPLARDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQ 652

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKG 616
            +    IE+ GLIK DFLGLKTL++++++++ +        D+  I  +D +TY L     
Sbjct: 653  YEGSVIEETGLIKMDFLGLKTLSIIKEAIENVKLTTGHDLDIDHISLEDPKTYKLYCDGK 712

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            T G FQ ES+GM++ L+ +QP   ED+IA+ +LYRPGP+D I  +  RK GKE+I    P
Sbjct: 713  TTGTFQFESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIP 772

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+ E+M+  K +F++G 
Sbjct: 773  VMERYLKDTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGG 832

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
              NG  +     I+    KFA Y FNKSHA  Y+ ++YQTA++K ++P E++AA ++  +
Sbjct: 833  QANGYKEETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANFPSEYMAAVLSRSL 892

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIME 855
             N+  I KF  + +   IQ++ P VN   + F V  N+   + L A+KGVG +  ++I+E
Sbjct: 893  SNITDITKFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGESAVQNIIE 952

Query: 856  AS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDN 907
                + P+ S+ DF  RV+    N++ +ES+  AGA D FG  R Q           LD 
Sbjct: 953  ERKKNGPYKSIFDFVERVNLTACNKKNIESMALAGAFDNFGILREQFFTDSGKGELFLDT 1012

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + +++    ++F  +      K  + +    +   R   E+ ++G Y S HP
Sbjct: 1013 LVRYGNKYQMDKSTAVNSLFGGDALIAIAKPEIPQCERWSDLERLNKEKELVGIYLSAHP 1072

Query: 968  LDVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y+ IL+ +   G  E     T++G  + L  +V   ++  T+ G   G +   +   
Sbjct: 1073 LDEYRIILKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTKNGKPYGILKIEDFTG 1132

Query: 1026 EYEANFF 1032
              E   F
Sbjct: 1133 SGEIPLF 1139


>gi|283956127|ref|ZP_06373614.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
            1336]
 gi|283792447|gb|EFC31229.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
            1336]
          Length = 1200

 Score =  990 bits (2560), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1058 (36%), Positives = 594/1058 (56%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++            F     + A++  L +KK+F D
Sbjct: 118  INKKLLEKY-SEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGISDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
            ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237  LNDPDRIRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 296  --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                K+ +    EE  E                GLE RL     +K    ++Y+QRL+ E
Sbjct: 297  REYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEERLKFIDESKH---KEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +   A   + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDA-AYEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R    +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESDGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G++ I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGNDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    K        +   E+ +LG Y SGHPLD +   +  +      +  +      
Sbjct: 953  VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|118617195|ref|YP_905527.1| DNA polymerase III subunit alpha [Mycobacterium ulcerans Agy99]
 gi|118569305|gb|ABL04056.1| DNA polymerase III, alpha subunit, DnaE1 [Mycobacterium ulcerans
            Agy99]
          Length = 1180

 Score =  990 bits (2560), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/1066 (31%), Positives = 541/1066 (50%), Gaps = 49/1066 (4%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              S SFVHL  H+ YS+L+GA  +  +L ++     PAI +TD  N+F A EF   A  A
Sbjct: 4    SSSRSFVHLHNHTEYSMLDGAAKITPMLAEVERLDMPAIGMTDHGNMFGASEFYNSATKA 63

Query: 66   GIQPIIGCQLDIDMQDNLK----------MTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            G++PIIG +  +                       +   +   + ++   A G + L +L
Sbjct: 64   GVKPIIGVEAYVAPGSRFDTRRITWGDPSQKGDDVSGSGSYTHLTMVAENATGLRNLFKL 123

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S      Q  +  R+    + E   EG+I  TG  SG +         + A +    ++
Sbjct: 124  SSLASFEGQLGKWSRMDAELVAE-HAEGIIATTGCPSGEVQTRLRLGHDREALESAAKWR 182

Query: 176  KLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++F  D  ++ L  H    +R     ++++    ++P +ATN+  +++ +    H+ L+ 
Sbjct: 183  EIFGADNYFLELMDHGLSIERRVREGLIEIGRKLDIPPLATNDCHYVTRDAAHNHEALLC 242

Query: 234  VAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPI 291
            V     +S  +R +   D +YLK+ +EM  ++ D +P A ++T+ IA R      V  P 
Sbjct: 243  VQTGKTLSDPNRFKFDGDGYYLKSAAEMRQLWDDDIPGACDSTLLIAERVQSYADVWTPR 302

Query: 292  --LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +P F   E  D      + L ++ +AGL  R   G        QDY  R ++E+ VI 
Sbjct: 303  DRMPIFPVPEGHD----PASWLHHEVMAGLRRRFPSGL------GQDYIDRAEYEIKVIC 352

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               F  YFLIVAD I +A+  +I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLN
Sbjct: 353  DKGFPSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLN 412

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467
            P+R S PD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAAL+D  R    Q 
Sbjct: 413  PERPSAPDIDIDFDDRRRGEMVRYAADKWGQDRVAQVITFGTIKTKAALKDSARIHYGQP 472

Query: 468  PYSQVDRLCKLIPND-PAHPVSLQAIAD--DSRFREA------RLADPSVDRLLEISQKL 518
             ++  DR+ K +P    A  + L  I D    RF+EA         DP V  + + ++ L
Sbjct: 473  GFAIADRITKALPPPIMAKDIPLSGITDPAHERFKEAAEVRGLIETDPDVRTIYQTARGL 532

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ 
Sbjct: 533  EGLIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRN 592

Query: 579  LTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  +++ + A RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP
Sbjct: 593  LTIIGDAIENIEANRGIDLDLESLPLDDKPTYELLGRGETLGVFQLDGGPMRDLLRRMQP 652

Query: 638  DCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIY 691
                DI+A+++LYRPGP+       Y +RKN ++ +  IHP ++     +L ET G+I+Y
Sbjct: 653  TEFNDIVAVLALYRPGPMGMNAHNDYADRKNNRQAVKPIHPELEEPLREILSETYGLIVY 712

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQ+M IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++
Sbjct: 713  QEQIMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWD 772

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+
Sbjct: 773  TILPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRK 832

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
              I ++PP VN   V+F      I + L A++ VG      ++        F    D+ +
Sbjct: 833  LGITVLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIGTRSGKGKFTDFSDYLN 892

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            ++D    N++V ESL+ AGA D  G+ R  L     +        +K       ++F   
Sbjct: 893  KIDISACNKKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGS 952

Query: 931  KGTFSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-- 987
                    T++          +   E+ +LG Y SGHPL+    +L           +  
Sbjct: 953  DSGADAVFTIKVPEDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLATQVDTAIPAILDG 1012

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   +R+  ++ +  ++  + G         +     E  FFP
Sbjct: 1013 DVSNDAQVRVGGILAAVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1058


>gi|255012661|ref|ZP_05284787.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_7]
          Length = 1281

 Score =  990 bits (2559), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1153 (32%), Positives = 582/1153 (50%), Gaps = 137/1153 (11%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-- 61
            Y+E    F+HL VH+ YSLL+G  S++ ++DK   D   AIA+TD   +F   EF  K  
Sbjct: 14   YME---PFIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVS 70

Query: 62   -------------------------------------------ACAAGIQPIIGCQLDID 78
                                                       A A+  +PIIGC+    
Sbjct: 71   KKNSKPLGIIKDSEKELKPLLAKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYCA 130

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
               N + +        +   +++L     GY+ LI++VS  +         RI    L++
Sbjct: 131  R--NGRHSKLASQDDRSGWHLIVLAKNKNGYKNLIKMVSLSWTEG-FYGRPRIDKELLEK 187

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD----- 193
               E LI+ +    G I +         AE+ +  FK LFG+  Y+ +QRH  +D     
Sbjct: 188  YH-EDLIICSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADC 246

Query: 194  ------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                  +     +++LA+ + + L+ATN+  F++ +D EAHD L+ ++    +    R R
Sbjct: 247  TIFPHQQEVNKVLIELAHKYNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMR 306

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE- 306
             +   ++K  +EM +IF+D+PEAL NT+EIA +  F      PI+P F   E    ++  
Sbjct: 307  YSKQEWMKTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESY 366

Query: 307  ----------------------------------------------EENELRNKAVAGLE 320
                                                          E + L      G +
Sbjct: 367  RQKLTEHDLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAK 426

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRG 379
                           + ++RL+FEL+++  M F GYFLIV DFI+ A++   + VGPGRG
Sbjct: 427  ELYGD------PLNDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRG 480

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            S AGS  AY L IT IDP+++ LLFERFLNPDR+S+PD D DF  D R EV+R+V  KYG
Sbjct: 481  SAAGSAVAYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYG 540

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN---DPAHPVSLQAIADDS 496
             ERVA IIT+G++  K+A++DV R  ++P S+ +RL KL+P+   D        AI    
Sbjct: 541  AERVAHIITYGTMATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVP 600

Query: 497  RFREARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRS 551
              +EA    DP     L+ +Q LEG  R+   HA G++IG   +S +VP+     +D   
Sbjct: 601  ELKEAANGNDPLARDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGE 660

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            ++ VTQ+    IE+ GLIK DFLGLKTL++++++++ +        D+  I  +D +TY 
Sbjct: 661  EMLVTQYEGSVIEETGLIKMDFLGLKTLSIIKEAIENVKLTTGHDLDIDHISLEDPKTYK 720

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T G FQ ES+GM++ L+ +QP   ED+IA+ +LYRPGP+D I  +  RK GKE+
Sbjct: 721  LYCDGKTTGTFQFESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEE 780

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I    P+++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+ E+M+  K 
Sbjct: 781  IKYDIPVMERYLKDTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKS 840

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            +F++G   NG  +     I+    KFA Y FNKSHA  Y+ ++YQTA++K ++P E++AA
Sbjct: 841  KFMAGGQANGYKEETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANFPSEYMAA 900

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTT 849
             ++  + N+  I KF  + +   IQ++ P VN   + F V  N+   + L A+KGVG + 
Sbjct: 901  VLSRSLSNITDITKFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGESA 960

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS---- 904
             ++I+E    + P+ S+ DF  RV+    N++ +ES+  AGA D FG  R Q        
Sbjct: 961  VQNIIEERKKNGPYKSIFDFVERVNLTACNKKNIESMALAGAFDNFGIQREQFFTDSGKG 1020

Query: 905  ---LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               LD + +Y    + +++    ++F  +      K  + +    +   R   E+ ++G 
Sbjct: 1021 ELFLDTLVRYGNKYQMDKSTAVNSLFGGDALIAIAKPEIPQCERWSDLERLNKEKELVGI 1080

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ IL+ +   G  E     T++G  + L  +V   ++  T+ G   G + 
Sbjct: 1081 YLSAHPLDEYRIILKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTKNGKPYGILK 1140

Query: 1020 FSEPAKEYEANFF 1032
              +     E   F
Sbjct: 1141 IEDFTGSGEIPLF 1153


>gi|228967702|ref|ZP_04128721.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            sotto str. T04001]
 gi|228791994|gb|EEM39577.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            sotto str. T04001]
          Length = 1108

 Score =  989 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1027 (36%), Positives = 591/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  +              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMF-GHFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNE----TSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL  R        G   + + +RLD ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRKRY-------GAPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ ++LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYNLLFERFLNPERVTLPDIDIDFPDVRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A +   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+  
Sbjct: 813  ATVTALLEERKKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|305433235|ref|ZP_07402391.1| DNA-directed DNA polymerase III alpha subunit [Campylobacter coli
            JV20]
 gi|304443936|gb|EFM36593.1| DNA-directed DNA polymerase III alpha subunit [Campylobacter coli
            JV20]
          Length = 1200

 Score =  989 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1059 (36%), Positives = 601/1059 (56%), Gaps = 48/1059 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   + G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELAKTLKEQGATSVAMTDHGNMFGAIDFYQTMRSEGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   +++               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGLEAYLHNHEDI-----SDKSSRQRFHLCLYAKNEVGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTFKKLFGD 180
            I    L+E  +EGLI  +    G ++            F     + A++  L +KK+FGD
Sbjct: 118  INKKLLEE-HSEGLICSSACLQGEVNWHLNIHSERNVRFGAKGYEAAKEAALWYKKVFGD 176

Query: 181  RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRAIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
            ++  DR R +  + Y+K+ ++M  +F+D+PEA+ENT EIA +C+  L +  P  P F   
Sbjct: 237  LNDPDRLRHSVHEFYVKSPAQMSELFADIPEAIENTQEIANKCNLELNLGNPTPPNFKFT 296

Query: 296  --IEKECDDIQKEEENELR---------NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                KE +    EE  E                GLE RL    I+K    ++Y+ RL+ E
Sbjct: 297  REYAKEYNISLPEEGKEFSFDNDDVVFDELCKKGLEERLKFVDISKH---EEYKTRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I +MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ AY+L ITD+DP+ +SLLF
Sbjct: 354  INIIKKMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVAYSLKITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L A+  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLARGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KLIP +    +   A   + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIPDADELAKLIPEELKITLDA-AYEKEPKIKEFIERHPKGPEVWEYAKALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLTL+
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTLI 592

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R    +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWEAIDVNDAKVYKTIQSGNTLGIFQIESGGMQNLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G +KI      ++ +L+ T G+I+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKKIEYPFDTLESVLEPTYGIIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A  ++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKSEFADGAEKQGYDRVKAEELWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNT-----PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
            SVN        V+ + G + I Y L AIK VG     +++EA     F +++DF SR++ 
Sbjct: 833  SVNKAIREFSAVEQEDGKDAIVYGLGAIKSVGIPAVENLLEARERGEFKNIDDFLSRIEP 892

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
             K+N+R LESL+ AGA D FGY+R  L  ++DN+ + ++ +   R N   ++F  ++ T 
Sbjct: 893  TKINKRTLESLIKAGAFDEFGYTRKCLFDNMDNLTEGSKKMADARKNAASSLFGEDELTV 952

Query: 935  SDKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
              ++ +  K        + E E+ +LG Y SGHPLD +    +++      +        
Sbjct: 953  GLQVNIVAKNEEFEVMEKLEFEKEILGIYVSGHPLDRFYDKFKEIDYVKSIDFSTLKGSG 1012

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             I     + S +   ++   R G +   +    +E   F
Sbjct: 1013 EILSIGKIESFKSMMSKNNKRYGRLEILDFYSTFEVTVF 1051


>gi|307331654|ref|ZP_07610761.1| DNA polymerase III, alpha subunit [Streptomyces violaceusniger Tu
            4113]
 gi|306882680|gb|EFN13759.1| DNA polymerase III, alpha subunit [Streptomyces violaceusniger Tu
            4113]
          Length = 1181

 Score =  989 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/1073 (32%), Positives = 544/1073 (50%), Gaps = 57/1073 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA+TD  NL  A +F Q+A  
Sbjct: 1    MTKPP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMTDHGNLHGAYDFYQQATG 59

Query: 65   AGIQPIIGCQLDIDMQDN----------LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  +   G   L  
Sbjct: 60   AGVTPIIGIEAYVAPESRRYKRRVQWGQPHQKRDDVSGSGGYTHKTIWAADKTGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y+     +  R+    + +  +EGLI  TG  SG +           A K    +
Sbjct: 120  LSSDAYMEGYFVKWPRMDKETIAQW-SEGLIASTGCPSGELQTRLRLGQFDEAVKAASEY 178

Query: 175  KKLF-GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  DR ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIEIERRVRDGLLEVGKKLGIPPLVTNDSHYTYSRESVAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFI-LQVH 288
             V     +S  DR R     +YLK+  EM +I S     E   NT+ +A +         
Sbjct: 239  CVQTGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCRNTLLVAEQIDATGWFEK 298

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++PRF   E       E    + +   G+  R   G        +D ++  ++E++VI
Sbjct: 299  RDLMPRFDVPEG----YTEVTWFQEEVRKGMARRFPGGV------PEDRQKLAEYEMDVI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VADFI WAK N I VGPGRGS AGS+ +YA+ ITD+DP+   L+FERFL
Sbjct: 349  IQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVSYAMGITDLDPVEHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYGH++VAQI T+G+++AK A++D  R L  P
Sbjct: 409  NPERVSMPDVDIDFDERRRGEVIRYVTEKYGHDKVAQIGTYGTIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y+  DR+ K +P D     + L  I D+           R     +P V ++++ ++ +E
Sbjct: 469  YAMGDRITKAMPADVLGKGIPLSGITDEKHPRYSEAGEVRGMYENEPDVKKVIDTARGIE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++    ++  VP++        VTQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSETVTDHVPVFSPKNDGQVVTQWDYPTCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  + A +G+ + +  +  DD +T+ LL    TLG+FQ +   MR  L  M+PD
Sbjct: 589  TIMDDAVKMVRANKGIDLKMLDLSLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRMMKPD 648

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI A+ +LYRPGP+     + Y  RKNG+++I  IHP ++  LKE    T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMNSHINYALRKNGQQEITPIHPELEEPLKEVLGITHGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+L+GYSL +AD+LRRAMGKK +E +DK+   F  G      S      ++++
Sbjct: 709  EQVQKAAQVLAGYSLGQADLLRRAMGKKKQEVLDKEFVPFQKGMRDRDYSDQAIQAVWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVRDDKDKSAVYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             I+++PP+VN    +F   GD+ I + L A++ VG      I+    A   + S  D+  
Sbjct: 829  GIKVLPPNVNESEANFTAQGDDVILFGLTAVRNVGQNVVEAIIRGRKAKGKYASFPDYLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +V++   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F   
Sbjct: 889  KVEAVVCNKRTTESLIKAGAFDEMGHTRKGLTAHYEALIDNVVAVKRKEAEGQFDLFGGM 948

Query: 931  KGTFSD--------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
             G   D         +          +     E+ +LG Y S HPL   + +L +     
Sbjct: 949  AGDGGDGEGPGFGLDVEFSDV-EWEKTYLLAQEREMLGLYVSDHPLFGIEHVLNEKADAA 1007

Query: 983  YEESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                       G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1008 ISALTGGEHADGAIVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1060


>gi|290961179|ref|YP_003492361.1| DNA polymerase III subunit alpha [Streptomyces scabiei 87.22]
 gi|260650705|emb|CBG73821.1| DNA polymerase III alpha chain [Streptomyces scabiei 87.22]
          Length = 1179

 Score =  989 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/1070 (32%), Positives = 543/1070 (50%), Gaps = 53/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ D         IA++D  NL  A +F   A  
Sbjct: 1    MSKPP-FTHLHVHTQYSLLDGAARLKDMFDACNEMGMTHIAMSDHGNLHGAYDFFHTAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  +   G   L +
Sbjct: 60   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANRTGLHNLFK 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGELQTRLRLGQFDEAVKAASEY 178

Query: 175  KKLF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  DR ++ L  H    +      ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIDIEHRVREDLLRVGKKLGIPPLVTNDSHYTYAHEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHA 289
             +     +S  DR +     +YLK+  EM ++ S     E   NT+ +A +        A
Sbjct: 239  CIQTGKNLSDPDRFKFDGTGYYLKSTEEMYAVDSSDAWQEGCANTLLVAEQIDTSGMFEA 298

Query: 290  -PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P+F   E       E    R + + G+  R   G         D  +++++E++ I
Sbjct: 299  RNLMPKFDIPEGF----TEVTWFREETMRGMHRRFPDGI------PDDRMKQVEYEMDTI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
              M F GYFL+VADFI WAKK  I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFL
Sbjct: 349  ISMGFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  P
Sbjct: 409  NPERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y+  DRL K +P D     + L  I D S          R     +P V ++++ ++ +E
Sbjct: 469  YAMGDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRSMYENEPDVKKVIDTAKGVE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   +G+ +++  +P DD +T+ LL    TLG+FQ +   MR  L  MQPD
Sbjct: 589  TIMDDAIKMVKANKGIDLEMLALPLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRQMQPD 648

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI A+ +LYRPGP+     + Y  RKN +++I  IH  ++  L+E    T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMNSHINYAERKNKRQEITPIHKELEEPLEEVLAVTYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F +GA +NG S      ++++
Sbjct: 709  EQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFTIFQAGAKRNGYSDEAIQALWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H+AAY ++SY TA++K +YP E++AA +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             I+++PP+VN    +F   GD+ I + L A++ VGT     I+ +  A   + S  D+  
Sbjct: 829  KIKVLPPNVNESEHNFAAQGDDVILFGLEAVRNVGTNVVESIIRSRKAKGKYASFPDYLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +V++   N+R  ESL+ AGA D  G++R  L    D++      V++       ++F   
Sbjct: 889  KVEAVACNKRTTESLIKAGAFDTMGHTRKGLTAHFDSMIDNVVAVKRKEAEGQFDLFGGM 948

Query: 931  KGTFSDKITLEK-----FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                S +                +     E+ +LG Y S HPL   + +L      G  +
Sbjct: 949  GEEESSEPGFGLDVEFTTDEWEKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQ 1008

Query: 986  SV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1009 LTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|57167730|ref|ZP_00366870.1| DNA polymerase III, alpha subunit [Campylobacter coli RM2228]
 gi|57020852|gb|EAL57516.1| DNA polymerase III, alpha subunit [Campylobacter coli RM2228]
          Length = 1200

 Score =  989 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1059 (36%), Positives = 601/1059 (56%), Gaps = 48/1059 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   + G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELAKTLKEQGATSVAMTDHGNMFGAIDFYQTMRSEGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   +++               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGLEAYLHNHEDI-----SDKSSRQRFHLCLYAKNEVGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTFKKLFGD 180
            I    L+E  +EGLI  +    G ++            F     + A++  L +KK+FGD
Sbjct: 118  INKKLLEE-HSEGLICSSACLQGEVNWHLNIHSERNVRFGAKGYEAAKEAALWYKKVFGD 176

Query: 181  RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRAIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
            ++  DR R +  + Y+K+ ++M  +F+D+PEA+ENT EIA +C+  L +  P  P F   
Sbjct: 237  LNDPDRLRHSVHEFYVKSPAQMSELFADIPEAIENTQEIANKCNLELNLGNPTPPNFKFT 296

Query: 296  --IEKECDDIQKEEENELR---------NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                KE +    EE  E                GLE RL    I+K    ++Y+ RL+ E
Sbjct: 297  REYAKEYNISLPEEGKEFSFDNDDVVFDELCKKGLEERLKFVDISKH---EEYKTRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I +MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ AY+L ITD+DP+ +SLLF
Sbjct: 354  INIIKKMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVAYSLKITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L A+  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLARGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KLIP +    +   A   + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIPDADELAKLIPEELKITLDA-AYEKEPKIKEFIERHPKGPEVWEYAKALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLTL+
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTLI 592

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R    +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWEAIDVNDAKVYKTIQSGNTLGIFQIESGGMQNLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G +KI      ++ +L+ T G+I+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKKIEYPFDTLESVLEPTYGIIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A  ++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKSEFADGAEKQGYDRVKAEELWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNT-----PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
            SVN        V+ + G + I Y L AIK VG     +++EA     F +++DF SR++ 
Sbjct: 833  SVNKAIREFSAVEQEDGKDAIVYGLGAIKSVGIPAVENLLEARERGEFKNIDDFLSRIEP 892

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
             K+N+R LESL+ AGA D FGY+R  L  ++DN+ + ++ +   R N   ++F  ++ T 
Sbjct: 893  TKINKRTLESLIKAGAFDEFGYTRKCLFDNMDNLTEGSKKMADARKNAASSLFGEDELTV 952

Query: 935  SDKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
              ++ +  K        + E E+ +LG Y SGHPLD +    +++      +        
Sbjct: 953  GLQVNIVAKNEEFEVMEKLEFEKEILGIYVSGHPLDRFYDKFKEIDYVKSIDFSTLKGSG 1012

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             I     + S +   ++   R G +   +    +E   F
Sbjct: 1013 EILSIGKIESFKSMMSKNNKRYGRLEILDFYSTFEVTVF 1051


>gi|229087161|ref|ZP_04219310.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-44]
 gi|228696133|gb|EEL48969.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-44]
          Length = 1109

 Score =  989 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1026 (35%), Positives = 592/1026 (57%), Gaps = 46/1026 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HLQ  + +SLL+ A  ++ I+ +       ++AITD N ++  + F +     GIQPI
Sbjct: 3    FAHLQCQTVFSLLKSACKIDEIVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I   +                 +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSGEE-----------EGTYPLVLLAENEIGYQNLLKISSAIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GL+ ++ G  G I++       ++AE+    ++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLVAISPGKDGEIEQLLLQGRDELAEEVARAYQNMF-GSFYMSLQHHA 165

Query: 191  GYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D  + + ++ Q A    +P+VATN+  ++++ D    + L++V   T ++  DRPR+ 
Sbjct: 166  IQDELFLQEKLPQFASEIGIPMVATNDVRYVNQSDALVQECLLSVQGGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+ +EM ++FS   EAL+NTV IA RC   +      LP+F     +      +
Sbjct: 226  TDQYYLKSSAEMGALFSHEEEALQNTVRIAERCHVEIPFQVNQLPKFPVPSNE----TSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+ R A            +R+RL+ EL VI+RM FS YFLIV DF+++A 
Sbjct: 282  AYLRRICDEGLQKRYA-------VIETVHRERLNHELAVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +++I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  EHDILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P  ++D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGPLRVAQIVTFGTLAAKAAIRDIARVMGLPPREIDIFSKLIPSKIGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A  +    RE    +   +R+ EI++++EG+ RH S HAAG+++   PL+  V +  +
Sbjct: 455  -EAYEESVPLREFVQGNLLHERVFEIAKRVEGMPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+  + +E+ GL+K DFLGL+ LTLL+  LDF+  + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPAEVLEELGLLKMDFLGLRNLTLLENILDFIVTKTGKQIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L  ++P+  EDI+A+ +LYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRSLKPNEFEDIVAVNALYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K +I  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK +E +D+
Sbjct: 633  KCQIQYLHPDLKPILENTYGVIVYQEQIMQIASRLAGFSLGEADLLRRAVSKKNREILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP+EF
Sbjct: 693  ERKHFVQGCLRNGYDETAAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYPLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++   +++PPS++    +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFRVLPPSLHRSSYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E     PF  L +FC R+ +K +  R LE+ ++AG  D F  SR  L  S+  
Sbjct: 813  ATVTAVIEERERNPFQDLFEFCLRMPAKFVTERNLEAFIWAGCFDDFQVSRTTLFNSMKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA    +            E    S  +  E+ S      +  NE+  LGFY S +P
Sbjct: 873  ALEYASLARE---------LGEESVPKSVYVQGEELSF---IEQLNNEKEALGFYLSSYP 920

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
               Y  +++++ I    +++   R    R    +   +  +T+K  ++ ++TF +   E 
Sbjct: 921  TAQYAKLVKELEIPSIAQAMRQKRKVQ-RAIVYITGVKVIRTKKMQKMAFITFCDQNDEM 979

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 980  EAVVFP 985


>gi|121611396|ref|YP_999203.1| DNA polymerase III subunit alpha [Verminephrobacter eiseniae EF01-2]
 gi|121556036|gb|ABM60185.1| DNA polymerase III, alpha subunit [Verminephrobacter eiseniae EF01-2]
          Length = 1186

 Score =  989 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1055 (38%), Positives = 583/1055 (55%), Gaps = 58/1055 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   ++ +    AAD QPA+AITD NNLF A++F +   + G++PI
Sbjct: 2    FVHLRMHTEFSVVDGTNRIDEVARAAAADGQPALAITDLNNLFGAVKFYKATRSQGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ +                     +++LV + +GY  L EL++R +     K    
Sbjct: 62   VGAEIFL-----------PGPAGAAPARLIVLVQSHQGYLNLSELLTRAWTRGVVKNQAL 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
               +WL+E+  EGLI+L G  +GP+ +A        A +  L    +F  R ++ LQR  
Sbjct: 111  CHWAWLEELA-EGLIVLAGAQAGPVGQALLKGDDAGAAETALRLAGMFPHRFFIELQRAG 169

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D    +    LA    LP+VAT+   F   +DYEAH+  + +A   +++   R  + 
Sbjct: 170  RADDESHVAAAAALAARLRLPVVATHPVQFARADDYEAHEARICIAEGDILANPRRQRKF 229

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T D Y K+ +EM  +F+DLP AL NTVEIARRC+  L +  P LP F       I    E
Sbjct: 230  TRDQYFKSAAEMQRLFADLPSALANTVEIARRCNLTLVLGKPQLPDFPTPGGMPI----E 285

Query: 309  NELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R  +V GLE RL         +      Y  RL+FE+  I  M F+GYFLIV DFIQ
Sbjct: 286  AYFRVASVNGLEQRLLCLYPEPAQREQQRPRYLARLEFEIGTIVEMGFAGYFLIVGDFIQ 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WA+ N  PVGPGRGSGAGS+ AYA+ ITD+DPL + LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 346  WARNNGCPVGPGRGSGAGSLVAYAMGITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQA 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV++KYG + V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P  
Sbjct: 406  NRDRVIDYVKDKYGKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGIAKLVPAKPGI 465

Query: 486  PVSLQA--------------IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
              +LQ               +  + +  E    +  V  ++E++QKLEGL R+   HA G
Sbjct: 466  SYTLQYPPNPKKEGDKNHYVLELEPQLAERMRKEEDVRTVIEMAQKLEGLTRNIGMHAGG 525

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I    L+   P+Y+   S   V+Q++   +E  GL+KFDFLGL TLT+LQ + +F+  
Sbjct: 526  VLIAPGKLTDFCPLYQPPGSASAVSQYDKDDVEAIGLVKFDFLGLATLTILQLAREFIVG 585

Query: 592  RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R           I  DD  TY L +   T  +FQ ES GM+  L+  +P  + D+IAL +
Sbjct: 586  RHKGQQDFSYDAIALDDGPTYRLFSEGQTEAVFQFESRGMQGMLKEARPSRLGDLIALNA 645

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  + NRKNGKE ++  HPL++ +L ET G+++YQEQVMQ AQLL GYSL 
Sbjct: 646  LYRPGPMDLIPSFINRKNGKEPVLYPHPLVESVLAETYGIMVYQEQVMQTAQLLGGYSLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM + +  F  GA++ G+S+  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 706  GADMLRRAMGKKKAEEMAEHRAIFRKGAAEKGLSQEKADEVFDLMEKFAGYGFNKSHAAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DAR+  +   PP VN     F
Sbjct: 766  YSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDARKMGLAFEPPDVNRGGHRF 825

Query: 829  KVGDNR-IYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKKL 877
            +   N+ I Y L AIKG G      I+ A              PF SL DFC RVD  +L
Sbjct: 826  EPVSNKIIRYGLGAIKGTGQQAIEAIVAAREGRGEGPRGACSGPFKSLFDFCVRVDRARL 885

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGT 933
            N+R +E+L+ AGA D     R  L+ S+D    +A     N      ++F    A   G+
Sbjct: 886  NKRTVEALIKAGAFDSIERHRAALVASIDRAFDFAAATLANVN--QGSLFDMMGADAHGS 943

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
               +  L   +      +   E+  +GFY SGH  D     +R+      +E   +    
Sbjct: 944  SQQEPELVGAAPWGIREQLMQEKTAVGFYLSGHLFDEVAAEVRRFVRTAIDELTDSREPQ 1003

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
               LA +V   +    ++G         +     E
Sbjct: 1004 --VLAGIVCDLRVINGQRGKL-ALFRLDDKTGVIE 1035


>gi|294787965|ref|ZP_06753209.1| DNA polymerase III, alpha subunit [Simonsiella muelleri ATCC 29453]
 gi|294484258|gb|EFG31941.1| DNA polymerase III, alpha subunit [Simonsiella muelleri ATCC 29453]
          Length = 1151

 Score =  989 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1036 (36%), Positives = 572/1036 (55%), Gaps = 37/1036 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            ++ L++HS +S+++G + L  +    A    PA+ +TD  N F  L+F +    AGI+PI
Sbjct: 6    YIPLRIHSEFSIIDGTIRLKELAQTAAKFGLPALGLTDLMNTFGLLKFYKICRNAGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + I                      +LL+   +GY RL EL+++ +      Q   
Sbjct: 66   MGADVRIHNPHKP----------DNPYRALLLIRNEKGYTRLSELLTQAHTHQHNHQPPE 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   WL E    GLI L+G   G +           A+     +   F +  Y+ LQR  
Sbjct: 116  LLEDWLAEGDNSGLICLSGAHMGEVGSQLMLGHDDAAQIAAQKYATWFPNAFYLELQRLP 175

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             +       S  +++A   +LP+VAT+ + FL   D+ AHD  + +A+   ++   RPR 
Sbjct: 176  EKPEWETYVSGSLKIAAKLDLPVVATHAAQFLQPNDFLAHDTRVCIANGWTLTDPKRPRE 235

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 Y     EM+S F+D+PEAL+N+VEIA+RC+  L +    LP+F   +  ++    
Sbjct: 236  FVASQYFIQPDEMLSRFADIPEALQNSVEIAKRCNLTLTLGKNFLPQFPTPDGMNL---- 291

Query: 308  ENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            ++ + + +  GL+ RL         +     +Y+ RLDFELN I +M F GYFLIV DFI
Sbjct: 292  DDYIIHLSNLGLQERLDTLYPNETERAQRLPEYQARLDFELNTIIQMGFPGYFLIVQDFI 351

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAK+N  PVGPGRGSGAGS+ AY+L ITD+DPL++SLLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 352  NWAKQNGCPVGPGRGSGAGSLVAYSLKITDLDPLKYSLLFERFLNPERVSMPDFDIDFCQ 411

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
              R  VI YV+ KYG + V+QI+TFG+L +K+ +RDVGR LQ+P+   D+L KL+P    
Sbjct: 412  ANRGRVIEYVREKYGKDAVSQIVTFGTLSSKSVIRDVGRVLQLPFGLCDKLSKLVPIVQN 471

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             P+ L +AIA +    +  + +   + L++++ KLE L R+   HA G++I    +S   
Sbjct: 472  KPLHLEKAIATEPEMMQ-IVKEEEAEELMDLAMKLEDLTRNLGMHAGGVLIAPGKISDFC 530

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----RGVKVDLS 599
             +Y+      PV+ ++   +E+ GL+KFDFLGL+ LT+++ + +F+ Q         D++
Sbjct: 531  GVYQADEHASPVSMYDKGDVEEIGLVKFDFLGLRNLTIIEMAQNFIKQTTGKDIDVNDVN 590

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            + P DD   Y +     T  +FQ ESSGM++ L   +   +E+IIA VSLYRPGP+D I 
Sbjct: 591  IAPLDDQAAYQIFRDANTTAVFQFESSGMKKMLSQARTTNLEEIIAFVSLYRPGPMDLIP 650

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G  K   +HPL+ P+L+ T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 651  DFIARMKG-AKFEYMHPLLAPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAMGK 709

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM K ++ F  GA+K GI++  A  IF+ + KFA YGFNKSHAAAYA +S+QTAW+
Sbjct: 710  KKVEEMVKHRDIFAQGAAKQGINREKADEIFDYMEKFAGYGFNKSHAAAYAYVSFQTAWL 769

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF--NIQIMPPSVNTPCVDFKVGDNR-IY 836
            K HYP EF+AA+M+ E+DN +++K F  DAR     I  +PP VN     F   + + I 
Sbjct: 770  KAHYPAEFMAATMSSELDNTDQLKIFYDDARSKLNGITFLPPDVNESYYRFVPNNQKQIR 829

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y+L AIKG G      I+ A      F +L DFC RV  + +NRR +E+L+  GA D   
Sbjct: 830  YALGAIKGTGEAAVNAIVAARESGGKFKNLFDFCERVGKQHINRRTIEALIRGGAFDGLE 889

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R  LL +++   + A   +K        +F        +   L +    + S +   E
Sbjct: 890  TNRALLLANVELALQNAD--QKANNANQGGLFDMLDDAIEELEMLPE-KAWSESQKLAEE 946

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            ++ +GFY SGHP + ++  +R+       +           +A      +    + G  I
Sbjct: 947  KQAIGFYLSGHPFEPHRAEVRQFSKTPLAQLRPAQHTQ--LIAGFATQIRTIMGKNGKFI 1004

Query: 1016 GWVTFSEPAKEYEANF 1031
               T  +     E   
Sbjct: 1005 AI-TLEDNTASQEVIV 1019


>gi|260060780|ref|YP_003193860.1| DNA polymerase III subunit alpha [Robiginitalea biformata HTCC2501]
 gi|88784910|gb|EAR16079.1| DNA polymerase III, alpha subunit [Robiginitalea biformata HTCC2501]
          Length = 1453

 Score =  989 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1088 (33%), Positives = 563/1088 (51%), Gaps = 74/1088 (6%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q LE  P F HL  HS +S+L+  + + +++   A  + PA+A+TD  N+  A  F ++
Sbjct: 252  VQALEGVP-FAHLHNHSQFSVLQSTMGIKDLVAAAAEYRMPAVALTDHANMMGAFHFVRE 310

Query: 62   ACAAG--------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
              A                + PIIGC+  +    N K              +V+L    +
Sbjct: 311  VKAHNSNLTEEDRASGKRDLIPIIGCEFFVCEDRNNKSVK------DYGYQVVMLAKNKK 364

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            GY  L ++ S  Y         RI    ++    E +I+LTG   G +         + A
Sbjct: 365  GYHNLAKMSSIAYTEG-FYYVPRIDREVVERY-KEDVIVLTGNLYGEVPSKVLNQGEKQA 422

Query: 168  EKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYE 226
            E+ LL +K+ FG+ LYV + RH   D  R +Q +V LA  HE+ LVATNN+ +  +ED E
Sbjct: 423  EEALLWWKEQFGEDLYVEVMRHGQEDEDRANQSLVALAKKHEVSLVATNNTYYRRKEDAE 482

Query: 227  AHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            AHD+L+ V      +                ++Y K+  EM  +F DLPE++++   I  
Sbjct: 483  AHDILLCVKEGEKQATPIGRGRGYRFGLPNQEYYFKSPEEMKELFRDLPESIQSIEGIIE 542

Query: 280  RCSFILQVHAPILPRFIEKE--------CDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
            +          +LP+F   E         D  ++ E   LR+    G E R        G
Sbjct: 543  KIEPFDLARDVLLPKFEIPEEFRVAEDAADGGKRGENAYLRHITFQGAEKRY-------G 595

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
               +  R+RLDFEL+ I    + GYFLIV DFI+ A+   + VGPGRGS AGSV AY L 
Sbjct: 596  EITEAIRERLDFELSTIENSGYPGYFLIVEDFIREARNMGVSVGPGRGSAAGSVVAYCLG 655

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT+IDPL++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV +KYG  +VAQIIT+G+
Sbjct: 656  ITNIDPLKYDLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIDKYGANQVAQIITYGT 715

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRF 498
            + AK+++RD  R L +P S+ DR+ KLIPN             +         +A  +  
Sbjct: 716  MAAKSSIRDTARVLDLPLSEADRIAKLIPNMSKLAKIFGQDEAELKKKFRSDDLAKVNEL 775

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
                       + + +++ LEG  R+   HA G++I    ++  VP+     SDL VTQF
Sbjct: 776  LNLSEGSDLEAQTVNMARVLEGSLRNTGIHACGVIITPDDITNFVPVATAKDSDLYVTQF 835

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGT 617
            +   +E AGL+K DFLGLKTLTL++ ++  +  R  + +     P DD ETY L     T
Sbjct: 836  DNSVVENAGLLKMDFLGLKTLTLIKDTVKIVKARHGIDLIPDDFPLDDAETYELFQRGET 895

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +GIFQ ES GM++ L+ ++P   +D+IA+ +LYRPGP++ I  +  RK+G+E+I    P 
Sbjct: 896  VGIFQYESPGMQKHLKDLKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGQEEITYDLPE 955

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  L+ET G+ +YQEQVM ++Q L+G+S  EADVLR+AMGKKI   + K K +F+ G  
Sbjct: 956  MEEYLQETYGITVYQEQVMLLSQKLAGFSKGEADVLRKAMGKKIFALLQKLKPKFLDGGE 1015

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             NG  + +   I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA ++  M+
Sbjct: 1016 ANGHPRDVLEKIWKDWEAFASYAFNKSHSTCYAYIAYQTAYLKAHYPAEYMAAVLSNNMN 1075

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856
            +++++  F ++ R+  + ++ P VN     F V  DN++ + + AIKGVG +    I+E 
Sbjct: 1076 DIKQVTFFMEECRRMGLDVLGPDVNESYYKFAVNKDNQVRFGMGAIKGVGRSAVETIVEN 1135

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQ-------SLDN 907
              A+ P+ S+ D   R+D +  N++  E+L  AG  D  G   R Q           L+ 
Sbjct: 1136 RKANGPYQSIFDLAKRIDLRAANKKAFENLALAGGFDSLGNAHRAQYFDCGTDGVSFLEK 1195

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + ++    +++  +   ++F         +  +       +    + E+ V+G Y SGHP
Sbjct: 1196 VIRFGARFQESENSSQVSLFGGSSEVQIAEPEIPPCEEWGTMETLKREKEVVGIYISGHP 1255

Query: 968  LDVYKPILRKMG---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            LD +K  ++      I    +    +    + LA ++   Q + ++ G      T  + +
Sbjct: 1256 LDDFKTEIQAFCNTEIYALNDLSPYLN-RELSLAGVITDVQHRVSKNGKGWAIFTLEDYS 1314

Query: 1025 KEYEANFF 1032
              +E   F
Sbjct: 1315 DAFEFKIF 1322


>gi|239917850|ref|YP_002957408.1| DNA-directed DNA polymerase III PolC [Micrococcus luteus NCTC 2665]
 gi|281413657|ref|ZP_06245399.1| DNA polymerase III subunit alpha [Micrococcus luteus NCTC 2665]
 gi|239839057|gb|ACS30854.1| DNA-directed DNA polymerase III PolC [Micrococcus luteus NCTC 2665]
          Length = 1198

 Score =  989 bits (2557), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1075 (34%), Positives = 564/1075 (52%), Gaps = 60/1075 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL  H+ YS+L+GA  L+++  +       ++AITD   LF A +F  KA AAG
Sbjct: 13   KDGGFVHLHTHTEYSMLDGAAKLDDLFAEAQRLGMDSLAITDHGYLFGAYDFWSKAKAAG 72

Query: 67   IQPIIGCQLDIDM----QDNLKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIE 114
            ++PIIG +  +      + + + T  G+        +       + LL  T EG   L  
Sbjct: 73   VKPIIGLEAYVAPGQQHRTDKEKTRWGEPHQRGDDVSGGGAYTHMTLLSETTEGMHNLFR 132

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            + S   L     +  R+    L +  ++GLI  TG  SG +         + A +    F
Sbjct: 133  MGSIASLDSVYAKWPRLDRELLSQY-SKGLIATTGCPSGEVQTRLRLGQYREAMQAASDF 191

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  D  Y  +  H    +R   + + +LA    LP VATN+  +  E D +AH+ L+
Sbjct: 192  RDIFGKDNYYCEIMHHGLDIERRVVTDLRRLAKDLGLPFVATNDLHYTHEHDAKAHEALL 251

Query: 233  AVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            A+   + +++               ++YLK+  +M  +F++LPEA +NT+ IA RC    
Sbjct: 252  ALQSGSKLNEPSYDQGGSRFAFSGTEYYLKSPRQMRELFAELPEACDNTLLIAERCEVEF 311

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
               A  +P F   E +D    E + L  +  +GL  R   G           R++ D+EL
Sbjct: 312  DTKANYMPVFPTPEGED----ETSWLIKEVASGLAYRYPDGV------PDHVRKQADYEL 361

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +VI  M F GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYAL ITD+DPL+  L+FE
Sbjct: 362  DVIISMGFPGYFLVVADFINWAKENGIRVGPGRGSGAGSMVAYALRITDLDPLKHGLIFE 421

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNPDR+SMPDFD+DF   RR EVI YV  KYG ERV  I+T+G+++ K AL+D  R +
Sbjct: 422  RFLNPDRVSMPDFDVDFDDRRRSEVIDYVTRKYGDERVTMIVTYGTIKTKQALKDSARVM 481

Query: 466  QMPYSQVDRLCKLIPND-PAHPVSLQAIADDSR--------FREARLADPSVDRLLEISQ 516
              P+S  + L K +P    A  + L+ I D +         FRE    DP    + E ++
Sbjct: 482  DQPFSMGESLTKALPPAVMAKDIPLKDIEDPAAPRYGEAAPFRELIATDPVAKEVFETAK 541

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             LEGL R    HAAG+++   P+  ++P+ R ++    +TQF+    E  GLIK DFLGL
Sbjct: 542  GLEGLKRQWGVHAAGVIMSSVPVIDVIPIMRRLQDGQVITQFDYPMAESLGLIKMDFLGL 601

Query: 577  KTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            + LT++  +++ +     V +DL  +  DD   Y LL    TLG+FQL+   MR  L+ M
Sbjct: 602  RNLTIISDAIENVKANQGVDLDLETLDVDDPAAYELLARGDTLGVFQLDGGPMRSLLKMM 661

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVI 689
            +PD  EDI A ++LYRPGP+  ++   Y  RKNG+++I  IHP ++     +L  T G+I
Sbjct: 662  RPDNFEDISATIALYRPGPMGANSHTNYALRKNGQQEITPIHPELEEPLREILDTTYGLI 721

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVM IAQ ++GYSL +AD+LRRAMGKK K E+DKQ E F  G    G S+     +
Sbjct: 722  VYQEQVMAIAQKVAGYSLGQADILRRAMGKKKKSELDKQYEAFHQGMLDRGYSEAAVKAL 781

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +++L  F+DY FNK+H+AAY ++SY TA++K HYP E++AA +T   D+ +K+  +  + 
Sbjct: 782  WDILLPFSDYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLAMYLNEC 841

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDF 868
            R   I ++PP VN   + F      I + + A++ VG    + +++   D   +    DF
Sbjct: 842  RHMGITVLPPDVNESHLTFTPVGRDIRFGMGAVRNVGANVVKGMVQGREDGGSYTGFGDF 901

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY--AQWVEKNRTNKHENI 926
             ++V     N+R +ES++ AGA D  GY+R  LL   +       AQ  +++      ++
Sbjct: 902  LAKVPLVVCNKRTIESMIKAGAFDSLGYARRALLAVHEEAVDATVAQKRKEDHGEFTFDL 961

Query: 927  FA-----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            FA      +    +D + +          +   E+ +LG Y S HPL     +L +    
Sbjct: 962  FAPGGGDEDDSDAADGVAVPDLPEWAKKEKLAFEREMLGLYVSDHPLQGLDGVLAQHADV 1021

Query: 982  GYE---ESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANFF 1032
                  +      G  + +A ++ + +++  +  G+        +     +  FF
Sbjct: 1022 QISRVLDDDGPADGAIVTIAGLITTLERRIAKSSGNAYARCEIEDLGGSMDVMFF 1076


>gi|289705613|ref|ZP_06502003.1| DNA polymerase III subunit alpha [Micrococcus luteus SK58]
 gi|289557663|gb|EFD50964.1| DNA polymerase III subunit alpha [Micrococcus luteus SK58]
          Length = 1198

 Score =  989 bits (2556), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1075 (33%), Positives = 560/1075 (52%), Gaps = 60/1075 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL  H+ YS+L+GA  L+++  +       ++AITD   LF A +F  KA AAG
Sbjct: 13   KDGGFVHLHTHTEYSMLDGAAKLDDLFAEAQRLGMDSLAITDHGYLFGAYDFWSKAKAAG 72

Query: 67   IQPIIGCQLDIDMQDNLKMTNQ------------GKTPFPTVPSIVLLVSTAEGYQRLIE 114
            ++PIIG +  +      +   +              +       + LL  T EG   L  
Sbjct: 73   VKPIIGLEAYVAPGHQHRTDKEKTRWGEPHQRGDDVSGGGAYTHMTLLSETTEGMHNLFR 132

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            + S   L     +  R+    L +  ++GLI  TG  SG +         + A +    F
Sbjct: 133  MGSIASLDSVYAKWPRLDRELLSQY-SKGLIATTGCPSGEVQTRLRLGQYREAMQAASDF 191

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  D  Y  +  H    +R   + + +LA    LP VATN+  +  E D +AH+ L+
Sbjct: 192  RDIFGKDNYYCEVMHHGLDIERRVVTDLRRLAKDLGLPFVATNDLHYTHEHDAKAHEALL 251

Query: 233  AVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            A+   + +++               ++YLK+  +M  +F++LPEA +NT+ IA RC    
Sbjct: 252  ALQSGSKLNEPSYDQGGSRFAFSGTEYYLKSPRQMRELFAELPEACDNTLLIAERCEVEF 311

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
               A  +P F   E +D    E + L  +  +GL  R   G           R++ D+EL
Sbjct: 312  DTKANYMPVFPTPEGED----ETSWLIKEVASGLAYRYPDGV------PDHVRKQADYEL 361

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +VI  M F GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYAL ITD+DPL+  L+FE
Sbjct: 362  DVIISMGFPGYFLVVADFINWAKENGIRVGPGRGSGAGSMVAYALRITDLDPLKHGLIFE 421

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNPDR+SMPDFD+DF   RR EVI YV  KYG ERV  I+T+G+++ K AL+D  R +
Sbjct: 422  RFLNPDRVSMPDFDVDFDDRRRSEVIDYVTRKYGDERVTMIVTYGTIKTKQALKDSARVM 481

Query: 466  QMPYSQVDRLCKLIPND-PAHPVSLQAIADDSR--------FREARLADPSVDRLLEISQ 516
              P+S  + L K +P    A  + L+ I D +         FRE    DP    + E ++
Sbjct: 482  DQPFSMGESLTKALPPAVMAKDIPLKDIEDPAAPRYGEAAPFRELVATDPVAKEVFETAK 541

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             LEGL R    HAAG+++   P+  ++P+ R ++    +TQF+    E  GLIK DFLGL
Sbjct: 542  GLEGLKRQWGVHAAGVIMSSAPVIDVIPIMRRLQDGQVITQFDYPMAESLGLIKMDFLGL 601

Query: 577  KTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            + LT++  +++ +     V +DL  +  DD   Y LL    TLG+FQL+   MR  L+ M
Sbjct: 602  RNLTIISDAIENVKANQGVDLDLETLDVDDPAAYELLARGDTLGVFQLDGGPMRSLLKMM 661

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVI 689
            +PD  EDI A ++LYRPGP+  ++   Y  RKNG+++I  IHP ++     +L  T G+I
Sbjct: 662  RPDNFEDISATIALYRPGPMGANSHTNYALRKNGQQEITPIHPELEEPLREILDTTYGLI 721

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVM IAQ ++GYSL +AD+LRRAMGKK K E+DKQ E F  G    G S+     +
Sbjct: 722  VYQEQVMAIAQKVAGYSLGQADILRRAMGKKKKSELDKQYEAFHQGMLDRGYSEAAVKAL 781

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +++L  F+DY FNK+H+AAY ++SY TA++K HYP E++AA +T   D+ +K+  +  + 
Sbjct: 782  WDILLPFSDYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLAMYLNEC 841

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDF 868
            R   I ++PP VN   + F      I + + A++ VG    + +++   D   +    DF
Sbjct: 842  RHMGITVLPPDVNESHLTFTPVGRDIRFGMGAVRNVGANVVKGMVQGREDGGSYTGFGDF 901

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY--AQWVEKNRTNKHENI 926
             ++V     N+R +ES++ AGA D  GY+R  LL   +       AQ  +++      ++
Sbjct: 902  LAKVPLVVCNKRTIESMIKAGAFDSLGYARRALLAVHEEAVDATVAQKRKEDHGEFTFDL 961

Query: 927  FA-----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            FA      +    +D + +          +   E+ +LG Y S HPL     +L +    
Sbjct: 962  FALGGNDEDDSDAADGVAVPDLPEWAKKEKLAFEREMLGLYVSDHPLQGLDGVLAQHADV 1021

Query: 982  GYE---ESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANFF 1032
                  +      G  + +A ++ + +++  +  G+        +     +  FF
Sbjct: 1022 QISRVLDDDGPADGAIVTIAGLITTLERRIAKSSGNAYARCEIEDLGGSMDVMFF 1076


>gi|229543549|ref|ZP_04432609.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
 gi|229327969|gb|EEN93644.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
          Length = 1114

 Score =  989 bits (2556), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1027 (37%), Positives = 593/1027 (57%), Gaps = 38/1027 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQV ++YSLLE  +S+        A     +AITD N ++ A  F +     GI+P
Sbjct: 2    RFVHLQVQTAYSLLESTISIPEWAAYAKALHYDTLAITDRNVMYGAFPFYKACRENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG   DI                 T   +VLL     GY+ L+++ S +    Q +   
Sbjct: 62   IIGMTADIMSSFEP----------DTAYPVVLLAKNETGYRHLMKISSAI----QTRPEP 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I + WL+   ++GLI  T G  G I++A        AE+  + ++ +FG   Y+ L+ +
Sbjct: 108  GIFIKWLRAY-SDGLIAFTPGLEGEIEQALLRGDEARAEEVAVLYRDIFGPSFYLALENN 166

Query: 190  RGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 +     +  L+    +P VA  N  +L +ED  AH+VL A+     ++ ++RPR 
Sbjct: 167  GTVQAKKVLPDMHALSEKLGIPEVAAANVKYLKKEDAFAHEVLRAIKAGVKLTDENRPRP 226

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +  H  K + EM  +F+D PEAL NT +IA  CS  ++    +LP F         +  
Sbjct: 227  ESGTHDFKPQEEMEQLFADFPEALANTEKIADACSVEIKTGQRLLPAFPVP----GGQTA 282

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L      GL  R+           + Y  RL++EL +I  M+FS YFLIV DF+++A
Sbjct: 283  DAFLEEVCRKGLAARVPN-------LEERYTDRLEYELKIIQEMQFSDYFLIVWDFMKYA 335

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +++ I  GPGRGS AGS+ AYAL ITD+DP+++ LLFERFLNP+R+SMPD D DF   +R
Sbjct: 336  REHGILTGPGRGSAAGSLVAYALYITDVDPVQYGLLFERFLNPERISMPDIDSDFPDHKR 395

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+IRYV  KYG + VAQIITFG+  AKAA RDV R   +   ++++L + IP+ P   +
Sbjct: 396  DEMIRYVAEKYGRQHVAQIITFGTFAAKAAARDVARIFGLSAKELEQLSRFIPSQPGMTL 455

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A    S FRE         +L E +  LEGL RH STHAAG++I   PL+ ++P+  
Sbjct: 456  K-KAYEASSAFREWIGQSDQHRKLFETALLLEGLPRHVSTHAAGVIISGEPLTGIIPVQ- 513

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
            +    + +TQ+ M  +E+ GL+K DFLGL+ LT+L+  L  + +  G K+ L  +P DD 
Sbjct: 514  EGHDGIFLTQYPMNHLEEIGLLKMDFLGLRNLTILEHILTGIEKGTGRKIRLQDVPLDDP 573

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T+ L ++  T GIFQ ES GMR+ LE ++P   EDI+A+ +LYRPGP++NI  Y  RK+
Sbjct: 574  QTFRLFSSGNTTGIFQFESDGMRKVLERLKPTEFEDIVAVNALYRPGPMENIPAYIERKH 633

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G + +   HP + P+L++T GVI+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E +D
Sbjct: 634  GLKPVEYPHPDLQPILEKTYGVIVYQEQIMQIASKMAGFSLGEADLLRRAVSKKKREILD 693

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +Q+  FI+GA K G  +  A  I++ + +FA+YGFN+SHA AY++++ + A++K HYP+ 
Sbjct: 694  EQRLHFINGAQKKGYERKTANTIYDFIVRFANYGFNRSHAVAYSMLACRLAYLKAHYPLY 753

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+A+ +T  + N +KI ++ ++A+Q  I+++PPSV      F V +  I YSLAAIKG+G
Sbjct: 754  FMASLLTSVIGNEDKIAQYIREAQQMGIRVLPPSVQHSHYPFTVENGAIRYSLAAIKGIG 813

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
              + + +++    +PF SL D   RV  K LNR++LE+  F+GA+D FG  R  LL S+D
Sbjct: 814  YASIKELLKERKRRPFKSLFDLVLRV--KGLNRKILEAFAFSGAMDEFGKDRAVLLASID 871

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
               ++A+ ++ +  +   ++F  ++  FS +    +    +   +   E++ LG Y SGH
Sbjct: 872  VALEHAEIMKPD--DGQADLFFEDEA-FSIEPNYVETEPISLMDKLAFEKQYLGLYLSGH 928

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P   Y+P   + G+    +    +R   IR  A +   +  +T++GS + ++  S+   E
Sbjct: 929  PAGQYRPGWDEAGVLAVSKLQPGMR--KIRFGACITDTRTIRTKQGSLMAFLRMSDETDE 986

Query: 1027 YEANFFP 1033
             E   FP
Sbjct: 987  IECVVFP 993


>gi|85374223|ref|YP_458285.1| DNA polymerase III alpha subunit [Erythrobacter litoralis HTCC2594]
 gi|84787306|gb|ABC63488.1| DNA polymerase III alpha subunit [Erythrobacter litoralis HTCC2594]
          Length = 1163

 Score =  989 bits (2556), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/1045 (43%), Positives = 629/1045 (60%), Gaps = 36/1045 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FV L+V SSYS+LEGA+    +         PAIAI D N L+ A+ F+     
Sbjct: 1    MAFAP-FVPLRVLSSYSMLEGAIDPKALAKLAKERGFPAIAICDRNGLYGAVAFAGACRD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GIQPIIG            +    +     +  + L      GY  L  LVS+ +L   
Sbjct: 60   EGIQPIIGA-----------LVGVARPGSDAIDHLPLYAQDEAGYLNLCHLVSKAHLERP 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    + L    +  TEGLI LTG S G + +         AE      + LF +RLYV
Sbjct: 109  VELVPHVSLDDF-DGRTEGLIALTGASEGGVTQLLAEGQKDHAEAYCDRLQALFPERLYV 167

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     ++  E  +V LAY  +LPLVATN + F     ++AHD ++ +A S  + ++
Sbjct: 168  ELSRRGNAVEQAAEEALVDLAYARDLPLVATNPANFAEPGFHKAHDAMLCIAGSYKIHEE 227

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DRPR     ++K+   M  IF DLPEA  NT+ IA+RC++      PILP          
Sbjct: 228  DRPRTDQQAWVKSDRMMGEIFEDLPEATANTLVIAQRCAYAPPYRDPILPSLAGD----- 282

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             + EE  LR  +  GLE RL           ++Y +RLD+E+ +I RM F GYFLIVADF
Sbjct: 283  LEGEERMLRELSTKGLEKRLEPYEDLSDEDREEYFERLDYEIGIINRMGFPGYFLIVADF 342

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK + IPVGPGRGSGAGS+ A+ALTITD+DP+R  LLFERFLNP+R+SMPDFDIDFC
Sbjct: 343  IQWAKDHGIPVGPGRGSGAGSLVAWALTITDLDPIRLGLLFERFLNPERVSMPDFDIDFC 402

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RR EVIRYVQ +YGH++VAQIITFG L+A+A LRDVGR +   Y++ DRLCK++PN P
Sbjct: 403  ETRRGEVIRYVQERYGHDKVAQIITFGKLKARAVLRDVGRIVDYGYNRTDRLCKMVPNHP 462

Query: 484  AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              P +L +A+   + F+     D     L++++ +LEGL R++STHAAG+VIGDRPLSQL
Sbjct: 463  TDPWTLPRALNGSAEFKAEYSNDNDTKALIDLAMQLEGLPRNSSTHAAGVVIGDRPLSQL 522

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD RSD+PVTQF+MK +E +GL+KFDFLGLKTL++LQK++D L +RG+ VDL  + 
Sbjct: 523  VPLYRDPRSDMPVTQFDMKHVESSGLVKFDFLGLKTLSVLQKAVDLLEKRGIDVDLGALA 582

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +DD   Y L+ +  T+G+FQLES GMR+ L  ++P   EDIIALVSLYRPGP+DNI ++ 
Sbjct: 583  WDDPAVYELMKSGNTVGVFQLESEGMRRTLTAVKPTKFEDIIALVSLYRPGPMDNIPLFG 642

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G E I   HP ++ +L ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKK +
Sbjct: 643  KRKAGLEPIEYPHPKLEEILAETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKNQ 702

Query: 723  EEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             EMDKQ+  F+ G +K + I    A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K 
Sbjct: 703  AEMDKQRAIFVEGCAKVSDIDADKANELFDLINKFAGYGFNKSHAAAYALLAYQTAWLKA 762

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQF-----NIQIMPPSVNTPCVDFKVGD---- 832
            HYP EF AASM  +M   EK+  F  DAR++      I + PP +N    +F V      
Sbjct: 763  HYPEEFYAASMCFDMHQSEKLAVFVDDARRYPLVEGGIVVAPPDINASEAEFTVERTDDG 822

Query: 833  NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              + Y+LA I+ VG      I+ E  A+  F+SL D   R+    +N R LE+L+ AGAL
Sbjct: 823  YAVRYALAGIRNVGEKAMDAIVREREANGVFESLGDLFDRLPQGAMNSRQLEALIAAGAL 882

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R +L  ++D +   A    + RT+  E +F  +     D + L+     +   R
Sbjct: 883  DGLEPNRGKLAANVDLLLATADAAIRERTSGQEALFGGDLAA-EDTLRLKDAEDWDRPTR 941

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIRGNN--IRLAAMVVSKQQK 1007
               E+   GFYFS HP++ ++ +    G + Y   +      G      +AAMV      
Sbjct: 942  MAKERENFGFYFSEHPVEHFRDVASANGARPYASLMTGGAPAGGRSKAMMAAMVEKVNIG 1001

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             TR+G++     FS+ + ++ A  F
Sbjct: 1002 TTRRGAQFVRADFSDSSGQFSAACF 1026


>gi|319779485|ref|YP_004130398.1| DNA polymerase III alpha subunit [Taylorella equigenitalis MCE9]
 gi|317109509|gb|ADU92255.1| DNA polymerase III alpha subunit [Taylorella equigenitalis MCE9]
          Length = 1178

 Score =  989 bits (2556), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1067 (36%), Positives = 605/1067 (56%), Gaps = 61/1067 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
                FVHL+ H+ +S+ +G + +  ++ K+ +   PAIAI+D  NLF  ++F + A   G
Sbjct: 5    NPKQFVHLRCHTEFSVFDGTIRIEELISKVQSVGMPAIAISDLANLFGFVKFYKGARKLG 64

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI  C   +D Q                  I ++ +  +GY RL E++S+++L ++G 
Sbjct: 65   IKPIAACDFVLDTQG----------VSGEAHRIEIIATNNKGYLRLCEIISKVWLENEGL 114

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R+   WL +  T GLI L+GG  G I +A  FN    A K L  + + F D  Y+ L
Sbjct: 115  DVARLKKEWLTD--TSGLIALSGGIYGDIGQA-LFNKPIEAPKLLEDWVERFPDGFYIEL 171

Query: 187  Q-----RHRGYDR------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            Q     +H  Y +            VQLA    +P+VAT+   FL  + +++HDV + +A
Sbjct: 172  QRELPDQHGRYSKFGQLSNEYSEMAVQLAAKFGVPVVATHPIQFLESDGFDSHDVRVCIA 231

Query: 236  HSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                +S   R +  + + Y  +  +M  +F D+P A+ NT EIA+RC+  L++  P LP 
Sbjct: 232  EGEFLSDPKRKQRFSREQYFYSPEQMCKLFEDIPSAITNTFEIAKRCNITLKLGKPQLPI 291

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARM 351
            F   E   +    +      A  GL  RL         +   A  Y+ RL+ E+ VI  M
Sbjct: 292  FPTPEGVSV----DEYFAYLAKEGLAKRLEFLFPDEAIRKEKAPIYQARLNKEIEVIESM 347

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F+GYFLIV DFI W K N +PVGPGRGSGAGS+ AY+L IT +DPL++ LLFERFLNP+
Sbjct: 348  GFTGYFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYSLGITGLDPLQYDLLFERFLNPE 407

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPDFD+DFCQD R++VI YV +KYG + V+QI+TFG+L A+A ++DVGR +Q+PY+ 
Sbjct: 408  RVSMPDFDVDFCQDNREKVIDYVIDKYGEDSVSQIVTFGTLGARAVVKDVGRVMQVPYAV 467

Query: 472  VDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADP----SVDRLLEISQKLEGLYRHAS 526
             D L KLIPN P  P +LQ A+ +    ++           +  +++ S K+EGL R+  
Sbjct: 468  CDELSKLIPNSPVDPYTLQRALNEIKDIQDLYNNSEGDSSDIKTVVDYSLKIEGLTRNTG 527

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            THA G++I    L+   P++R   S   V+Q++   IE  GL+KFDFLGL+ LT+L  ++
Sbjct: 528  THAGGVLIAPGKLTDFTPLHRLPGSTTAVSQYDKNDIEDVGLVKFDFLGLRNLTILDWTV 587

Query: 587  DFLAQR---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
             ++ +        DL  +P DD  TY LL+   T  +FQLES GM+  L  ++P   EDI
Sbjct: 588  RYVKEFNEAQKDFDLDRLPLDDKATYKLLSDGNTTAVFQLESDGMKNLLMKLKPSTFEDI 647

Query: 644  IALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +A+++LYRPGP+++ +V  + +RK+G+ K+   H  ++ +LK T GVI+YQEQVM I+Q+
Sbjct: 648  VAVLALYRPGPLNSGMVDDFVDRKHGRAKVDYFHKDLESVLKPTYGVIVYQEQVMLISQI 707

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            + GYSL  AD+LRRAMGKK  EEM +Q+E F  GA + G    +A N+F+L+  FA YGF
Sbjct: 708  IGGYSLGGADILRRAMGKKKLEEMARQREIFQKGAMERGYDPNLATNLFDLMEMFASYGF 767

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NKSH+ AYA+I+YQTAW+K ++P EF+AA+MT +M++ +K++ F +D     ++++ P++
Sbjct: 768  NKSHSVAYALIAYQTAWLKAYHPAEFMAATMTSDMNDTDKVQIFWEDCIHNGLKLLAPNI 827

Query: 822  NTPCVDFKVGDNR----------IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
            NT    F+   +           I Y L AIKGVG      I++A      F SL+D   
Sbjct: 828  NTSYYRFEPVKDEQSNLGLPPKTIGYGLGAIKGVGQNVVEEIVKARNEGGDFISLQDLIK 887

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RVD   + +R +E+L+ +GA+D    +R  L+  +D+    A   E+++     ++FA +
Sbjct: 888  RVDRTIVTKRSIEALIKSGAMDVLDKNRALLMAMVDDCYIAANQAEESKD--QWDLFADD 945

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
            +G   +    E           + E+  +GFYFS     V++  +RK      +   +  
Sbjct: 946  EGGAIEVSVPEGIEAWTLKEVLDAERESIGFYFSNDLFGVWRSEVRKFIKTPIKNLGS-- 1003

Query: 991  RGNNIRLAAMVVSKQQKKTR---KG-SRIGWVTFSEPAKEYEANFFP 1033
                + +A ++ + +   ++   KG +R+ ++T  + ++  E    P
Sbjct: 1004 NQGALSIAGVLTNLRINISKNSDKGDNRLIFLTLDDGSETVEVFCPP 1050


>gi|302518507|ref|ZP_07270849.1| DNA polymerase III subunit alpha [Streptomyces sp. SPB78]
 gi|302427402|gb|EFK99217.1| DNA polymerase III subunit alpha [Streptomyces sp. SPB78]
          Length = 1181

 Score =  988 bits (2555), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1072 (32%), Positives = 544/1072 (50%), Gaps = 55/1072 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F HL VH+ YSLL+GA  L ++           IA++D  NL  A +F  +A  
Sbjct: 1    MSAKTPFTHLHVHTQYSLLDGAARLKDMFQACNEMGMTHIAMSDHGNLHGAYDFFHQAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  + + G   L +
Sbjct: 61   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFK 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +         + A K    +
Sbjct: 121  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQPEEALKAAADY 179

Query: 175  KKLF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  DR ++ L  H    +      ++++     +P + TN+S +    +  AHD L+
Sbjct: 180  QDIFGKDRYFLELMDHGIDIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHESVAHDALL 239

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHA 289
             +     +S  DR R     +YLK   EM +I S     E   NT+ +A +         
Sbjct: 240  CIQTGKNLSDPDRFRFDGTGYYLKTTDEMYAIDSSDAWQEGCRNTLLVAEQIDTTGMFEK 299

Query: 290  -PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P+F   +       E    + +   G+E R   G         D +++ ++E++VI
Sbjct: 300  RDLMPKFEIPDGF----TEITWFQEEVRRGMERRYPAGV------PDDRQKQAEYEMDVI 349

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFL
Sbjct: 350  IQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFL 409

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  P
Sbjct: 410  NPERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYP 469

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIA--------DDSRFREARLADPSVDRLLEISQKLE 519
            Y+  DR+ K +P D     + L  I         +    R     +P V ++++ ++ +E
Sbjct: 470  YAMGDRITKAMPADVLGKGIDLDGITNPTHPRYSEAGEVRGMYENEPDVKKVIDTAKGVE 529

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++   P+    P++     ++ +TQ++    E  GL+K DFLGL+ L
Sbjct: 530  GLVRQMGVHAAGVIMSSEPIIDHAPVWVRHTDNVTITQWDYPQCESLGLLKMDFLGLRNL 589

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   +G ++DL  I  DD +TY LL    TLG+FQ +   MR  L  M+PD
Sbjct: 590  TIMDDAVKMVKSNKGRELDLLAIQLDDPKTYDLLCRGDTLGVFQFDGGPMRSLLRLMKPD 649

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI A+ +LYRPGP+       Y  RKNG+++I  IHP ++  LKE    T G+I+YQ
Sbjct: 650  NFEDISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEVLGLTYGLIVYQ 709

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  +E++K    F +GA KNG S      ++++
Sbjct: 710  EQVQKAAQIVAGYSLGEADILRRVMGKKKADELEKNFVLFQAGARKNGYSDEAIQALWDV 769

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+ 
Sbjct: 770  LVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAAVLTSVRDDKDKSAVYLNECRRM 829

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             I+++PP VN    +F   GD+ I + L A++ VG      I+ +  A   + S  D+  
Sbjct: 830  GIRVLPPDVNESLANFAAQGDDVILFGLTAVRNVGQNVVDSIIRSRKAKGKYASFPDYLD 889

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--- 927
            +V++   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F   
Sbjct: 890  KVEAVVCNKRTTESLIKAGAFDQLGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGM 949

Query: 928  ----AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                  ++  F   +T         S     E+ +LG Y S HPL   + +L      G 
Sbjct: 950  GDDDGKDEPGFGLDVTFGD-DEWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGI 1008

Query: 984  EESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +        G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1009 GQLTGGDFGDGAVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1060


>gi|218899758|ref|YP_002448169.1| DNA polymerase III, alpha subunit [Bacillus cereus G9842]
 gi|218545476|gb|ACK97870.1| DNA polymerase III, alpha subunit [Bacillus cereus G9842]
          Length = 1108

 Score =  988 bits (2555), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1027 (36%), Positives = 590/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  +              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMF-GHFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNE----TSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL  R        G   + + +RL+ ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRKRY-------GAPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A +   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+  
Sbjct: 813  ATVTALLEERKKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|283953915|ref|ZP_06371444.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
            414]
 gi|283794520|gb|EFC33260.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
            414]
          Length = 1200

 Score =  988 bits (2554), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1058 (36%), Positives = 594/1058 (56%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGIEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTFKKLFGD 180
            I    L+E  +EGLI  +    G ++            F     + A++  L +KK+F D
Sbjct: 118  INKKLLEEY-SEGLICSSACLQGEVNWHLNTYNERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  ++   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKDRAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
            ++   R R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237  LNDPGRIRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 296  --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                KE + I  EE  E                GLE RL     +K    ++Y+QRL+ E
Sbjct: 297  REYAKEYNIILPEETKEFSFDNDDIVFEELCKKGLEERLKFINESKH---EEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +   A   + + +E          + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDA-AYEKEPKIKEFIERHHKGFEVWEYAKALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R    +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESDGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIKYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G ++T A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKIDFADGAEKQGYNRTEAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  +  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGRDAIIYGLGAIKSVGIPAVENLLEARQNGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KVNRRTLESLIKAGAFDEFGFTRKALFDNMENLSEVSRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKIT-LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++  + K        + E E+ +LG Y SGHPLD +   +  +      +         
Sbjct: 953  VQVNFIPKNEEFEVMEKLEYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFENLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++   F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRLEILDYYSSFDTTVF 1050


>gi|58584756|ref|YP_198329.1| DNA polymerase III alpha subunit [Wolbachia endosymbiont strain TRS
            of Brugia malayi]
 gi|58419072|gb|AAW71087.1| DNA polymerase III alpha subunit [Wolbachia endosymbiont strain TRS
            of Brugia malayi]
          Length = 1112

 Score =  988 bits (2554), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/1025 (45%), Positives = 658/1025 (64%), Gaps = 42/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS YSLLE ++ +  ++     ++ PA+AITD+ NLF +LEFS+ A + GIQ I
Sbjct: 2    FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFSEYAASRGIQLI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-V 129
             GC + +   +                 I+LL    +GY  L+ LVS  +   +      
Sbjct: 62   TGCNIIVRYSE-------------QNLPILLLTKNEQGYTNLVTLVSESFRKRKNNSDIP 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L  + + GLI LTGG  G + +  F     + EK LL     F   LYV LQRH
Sbjct: 109  YVDFDELLNL-STGLITLTGGCDGILAQLLFRQDKGIVEKLLLA----FNGHLYVELQRH 163

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E  ++  AY H +PLVATN+  F +  DYEA+D+L  ++  +   + +R ++
Sbjct: 164  GLNKELELEETLIDFAYQHNIPLVATNDVFFPNRSDYEAYDILTCISEGSYTLENNRKKL 223

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T +HY K+ +EM  +FSD+PEA+ NT+ IA+RCS++ +   PILP+F  +E     K E 
Sbjct: 224  TTEHYFKSVAEMEKLFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCREN----KTEN 279

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL+ +A AGLE+R+A          + Y  RL++EL+VI  M ++GYFLIV+DFI+W+K
Sbjct: 280  EELKEQATAGLELRIANKI---DIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSK 336

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N IPVGPGRGSGAGS+ A+AL ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD
Sbjct: 337  ANGIPVGPGRGSGAGSIVAWALQITDLDPIKFGLIFERFLNPDRISMPDFDIDFCQEKRD 396

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI YVQ KYG   VAQIITFG LQA+A LRDVGR LQM Y+QVD++ K++P +P +PV+
Sbjct: 397  LVIDYVQKKYG--YVAQIITFGKLQARAVLRDVGRVLQMSYTQVDKISKMVPFNPVNPVT 454

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L QAI  D   ++ R +D  + +LL+IS KLEG+YRH STHAAGIVI D+ L   VP+Y 
Sbjct: 455  LSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYY 514

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D  S LP+TQ++MK++EKAGLIKFDFLGL TLTL+      + Q G K+D++ +  +D +
Sbjct: 515  DPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINQNGKKIDIASVSLNDRK 574

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L+   ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  RK+G
Sbjct: 575  TYEMLSNGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYIARKHG 634

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             EK   IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIK EMDK
Sbjct: 635  LEKPDYIHPLLERVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKAEMDK 694

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q++ F+ GA+KNG+    A  IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+EF
Sbjct: 695  QRKLFVQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLEF 754

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A M L +D+ +K+  F   A+   + ++ P ++    +F +    I Y +AA++ VG 
Sbjct: 755  FTALMNLNIDDRDKLNLFYHAAKFSGVSVLLPDISKSKAEFSIEGKHIRYGIAALRNVGF 814

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            + A  I+   +   +  + +F         N+R LESL+ +GA D    +R QL +S+D 
Sbjct: 815  SIAEGIVNTRSS-TYKDIWEFIQ-NSGHITNKRALESLIKSGACDSVHKNRKQLYESIDT 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  +A    ++R +    +F +       K  LEK    N   + E+E   LGFY + HP
Sbjct: 873  LVYFANKNRQDRESNQAVLFGNFNVL---KPKLEKVKDFNEEEKLEHELFSLGFYLTSHP 929

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L+ ++ +L K+ I    E          + A ++++ + + + +G R   +T S+P    
Sbjct: 930  LEKFRTLLEKLNIGFIGE------NKIAKTAGVILNVRMRTSERG-RFVILTLSDPHNVS 982

Query: 1028 EANFF 1032
            E  F+
Sbjct: 983  EIAFY 987


>gi|50085210|ref|YP_046720.1| DNA polymerase III alpha [Acinetobacter sp. ADP1]
 gi|49531186|emb|CAG68898.1| DNA polymerase III, alpha chain [Acinetobacter sp. ADP1]
          Length = 1187

 Score =  988 bits (2554), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1039 (36%), Positives = 586/1039 (56%), Gaps = 47/1039 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++     D  PA+A+TD +NL +A++F       GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRIPDLIKAAVQDDMPALALTDLSNLHAAVKFYTSCLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + ++  +                 I LL  T +G++ L E+VSR ++  Q      
Sbjct: 63   LGSVVRLNDPE---------------HRITLLAMTNDGWKGLTEIVSRGHIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            +   W+ E   + +I+L G  S  + +    ++ Q AE  L  +++ FG+R+Y+ L R  
Sbjct: 108  VQKEWILEQH-QDIIVLLGQHS-DVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIALTRTQ 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     + V+LA  + + +VA N+  F+  +D++AH+  + +A   V++   RPR  
Sbjct: 166  RAGEEDYMVEAVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHRRPRIY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            + + Y K  SEM  +FSD+P A+ENT  IA+RC+  LQ+    LP +   +   I    +
Sbjct: 226  SSEQYFKTASEMEELFSDIPSAIENTYYIAQRCNVSLQLGTYFLPDYPIPDGFTI----D 281

Query: 309  NELRNKAVAGLEVRLAQGAI------AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE RL                 + Y +R+++E+ +I +M F GYFLIV D
Sbjct: 282  TYFEHLSKEGLEERLNHLYPIETRDQDWPEIRKPYDERIEYEVGIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKSNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            P      QAI  + + ++         +     + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLKQAIEMEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---V 594
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +R    +
Sbjct: 522  KITDYSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIQSEI 581

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLDIANVPLDDKDAYLVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  + +R +G E    +HPL++ +L+ T G+++YQEQVMQ AQ  +GY+L  AD+LR
Sbjct: 642  MDLIPDFIHRMHGGE-FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ FI GA++  I +  A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFIKGAAEKEIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TAW+K HYP EF+AA ++ EM N + I     D R   ++++PPSVN     F   D R
Sbjct: 761  HTAWLKAHYPAEFMAAVLSSEMQNTDSIVFLIDDCRNNALEVLPPSVNMSLYHFHASDER 820

Query: 835  IY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               Y L AIKGVG    + ++++   + P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEQAMQSVIDSRIKNGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C    R  L+  L    + A+   +NR     ++F   +     +   +     +  VR 
Sbjct: 881  CLQIERSSLMAQLPEAVQAAEQARQNRETGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+P L+        E   T RG     A +V+          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRPELKSFIPAKLNEVTPTRRGVTTVFAGLVLDVANFP---- 994

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
            +R+   T  +     E + 
Sbjct: 995  NRMVI-TLDDGTARIEVSC 1012


>gi|229112070|ref|ZP_04241613.1| DNA polymerase III subunit alpha [Bacillus cereus Rock1-15]
 gi|228671393|gb|EEL26694.1| DNA polymerase III subunit alpha [Bacillus cereus Rock1-15]
          Length = 1108

 Score =  988 bits (2554), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1027 (36%), Positives = 591/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  +              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMF-GHFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNE----TSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL  R        G   + + +RLD ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRKRY-------GEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A +   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E   +K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+  
Sbjct: 813  ATVTALLEEREEKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|229072106|ref|ZP_04205315.1| DNA polymerase III subunit alpha [Bacillus cereus F65185]
 gi|228711040|gb|EEL63006.1| DNA polymerase III subunit alpha [Bacillus cereus F65185]
          Length = 1108

 Score =  987 bits (2553), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1027 (36%), Positives = 591/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  +              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMF-GHFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNE----TSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL  R        G   + + +RLD ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRKRY-------GEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A +   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|218235458|ref|YP_002369400.1| DNA polymerase III DnaE [Bacillus cereus B4264]
 gi|228960872|ref|ZP_04122505.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            pakistani str. T13001]
 gi|229147164|ref|ZP_04275522.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST24]
 gi|296505075|ref|YP_003666775.1| DNA polymerase III DnaE [Bacillus thuringiensis BMB171]
 gi|218163415|gb|ACK63407.1| DNA polymerase III, alpha subunit [Bacillus cereus B4264]
 gi|228636274|gb|EEK92746.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST24]
 gi|228798768|gb|EEM45748.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            pakistani str. T13001]
 gi|296326127|gb|ADH09055.1| DNA polymerase III DnaE [Bacillus thuringiensis BMB171]
          Length = 1108

 Score =  987 bits (2553), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1027 (36%), Positives = 590/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  +              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMF-GHFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNE----TSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL  R        G   + + +RLD ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRKRY-------GEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A +   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|228903122|ref|ZP_04067258.1| DNA polymerase III subunit alpha [Bacillus thuringiensis IBL 4222]
 gi|228856531|gb|EEN01055.1| DNA polymerase III subunit alpha [Bacillus thuringiensis IBL 4222]
          Length = 1108

 Score =  987 bits (2552), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1027 (36%), Positives = 590/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  +              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMF-GHFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNE----TSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL  R        G   + + +RL+ ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRKRY-------GAPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAERVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A +   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+  
Sbjct: 813  ATVTALLEERKKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|283780088|ref|YP_003370843.1| DNA polymerase III subunit alpha [Pirellula staleyi DSM 6068]
 gi|283438541|gb|ADB16983.1| DNA polymerase III, alpha subunit [Pirellula staleyi DSM 6068]
          Length = 1192

 Score =  987 bits (2551), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1049 (35%), Positives = 571/1049 (54%), Gaps = 35/1049 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  HS YSLL+GA S+  +L +       A+A+TD  NL  ALEF  KA A GI PI
Sbjct: 6    FVHLHCHSHYSLLDGASSVPKLLKRAKEHGMSALALTDHGNLHGALEFYNKAKALGINPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  I      +  +   +   +   + LL    +G++ LI+L S   L        R
Sbjct: 66   IGYEAYIAPGSRFEKKDAANSKEASY-HLTLLAQNRQGFKNLIKLASAASLEG-FYYKPR 123

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS-----SQVAEKRLLTFKKLFGDRLYVN 185
            I    LQ   +EG+I L+G  S     A           + A++    F K+FGDR ++ 
Sbjct: 124  IDKEILQ-AHSEGIICLSGCVSSEFSNAVLRGHGGDKELKDAQEIAGWFHKVFGDRYFLE 182

Query: 186  LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +  +     R++    V +A    LPLVAT+++ +   ED EA DVL+ V      +  +
Sbjct: 183  IMNNGIDIQRFQLEGAVDVAKKMGLPLVATSDAHYAYAEDAEAQDVLLCVNTGKFRTDTN 242

Query: 245  RP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R        YL++  EM   F  L +A+  + EIA      L++     P +        
Sbjct: 243  RMKMENGSFYLRSAEEMYEHFHGLEDAVARSQEIADSVHIDLELGKRHFPVYPIPP---- 298

Query: 304  QKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +K  E+ LR   V GL+ R A  +  +  G  ++    RL+ ELNVI ++ F  YFLIV 
Sbjct: 299  EKTAEDYLRELCVQGLKERYAGDEEMLPGGELSEVVVARLERELNVINKLGFPNYFLIVW 358

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF++ A++ ++P    RGSG G++  +AL ++ + P+++ LLFERFL+ +R   PD DID
Sbjct: 359  DFVRHAREQDVP-ATARGSGVGALVCFALYLSHVCPIKYDLLFERFLDLNRKEAPDIDID 417

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC+DRR ++IRYV++KYG   VAQI TFG+L A+AA++DVGR L +P  +V+++  ++P+
Sbjct: 418  FCKDRRGDIIRYVKDKYGESNVAQIGTFGTLAARAAIKDVGRVLGIPMERVNKVTAMVPD 477

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +S  A+      +     DP V  +L+++ ++EGL R+  THAA +VI D+PL++
Sbjct: 478  ELHIHLS-DALEKSDELKAVYNGDPDVREMLDLAMRIEGLARNVGTHAAAVVIADKPLTE 536

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
             VP+ R       +TQ++M  +E AGL+K DFLGL+ LT+L K+++ + Q    +VD   
Sbjct: 537  YVPLGRVGGKSDIITQWSMGDVEAAGLLKMDFLGLRNLTILSKAVEIIQQTTGKRVDPYK 596

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
             P DD  T+ LL    T GIFQLES G+R  L+ M+PD   DIIA  +LYRPGP++  +V
Sbjct: 597  FPLDDKRTFALLQRGETKGIFQLESGGIRDLLQKMKPDHFRDIIATNALYRPGPLEGGMV 656

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y   K+G+++   IHP+ + +L ET GV++YQEQVM+I   L G  L+ +  + +A+ 
Sbjct: 657  ADYVAVKHGRKQAEYIHPVCEKILSETNGVMVYQEQVMRILNELGGIELAASYTVIKAIS 716

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK ++ ++K K +F+ GA + GI++  A + + L+ KFA YGFNKSH+ AYA+I+Y TA+
Sbjct: 717  KKKEDLINKNKVQFLKGAVEKGITEKQADDFWNLIIKFAGYGFNKSHSTAYALIAYMTAY 776

Query: 779  MKTHYPVEFLAASMTLEMDN-----VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            +K HYPVEF+AA ++ ++        + + +  +D  +  I + PP+VN   VDF V D 
Sbjct: 777  LKAHYPVEFMAALLSGDIQGRNFKTKDSLVEHLEDCTRMGITVQPPNVNESNVDFAVKDG 836

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +I + L+AIKG G +    I+ A     PF  L DFC RVD+   ++  +E+L+ AGA D
Sbjct: 837  KILFGLSAIKGCGGSAGESIVAARTKGGPFRDLFDFCERVDATGSSKGTIETLIKAGAFD 896

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVENSS 949
            CFG  R Q    ++   +  Q V  +R +  +N+F     E+ + +   TL       S 
Sbjct: 897  CFGARRSQQFAIVERAIQSGQSVAADRKSGQKNLFGAFEEEEPSKAKSTTLPDVPELASK 956

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 E+ VLGFY S HPLD +K  L         +       + + L  MV + +   T
Sbjct: 957  EMATQEKEVLGFYLSSHPLDEHKRTLATYRSHTTADIGPIPDRSEVILGGMVSAIKLSNT 1016

Query: 1010 RK---G--SRIGWVTFSEPAKEYEANFFP 1033
            +    G  SR       +         +P
Sbjct: 1017 KNPKPGAPSRYVMFDLEDTEGTIRCILWP 1045


>gi|189485028|ref|YP_001955969.1| DNA polymerase III subunit alpha [uncultured Termite group 1
            bacterium phylotype Rs-D17]
 gi|170286987|dbj|BAG13508.1| DNA polymerase III subunit alpha [uncultured Termite group 1
            bacterium phylotype Rs-D17]
          Length = 1174

 Score =  987 bits (2551), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1061 (35%), Positives = 594/1061 (55%), Gaps = 52/1061 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALS-------LNNILDK-IAADQQPAIAITDTNNLFSALEFS 59
            +  FVHL  H+ YSLL+GA            + +      + PA+AITD  N++ A+EF 
Sbjct: 2    AAEFVHLHNHTEYSLLDGACRLIDDKGKPGELFNLIAKEYKMPALAITDHGNMYGAMEFY 61

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT--VPSIVLLVSTAEGYQRLIELVS 117
              A  +GI+PIIGC++ +  +      N  +          + LL    EGYQ L+ +VS
Sbjct: 62   LAAKQSGIKPIIGCEIYVAPKSRFDKKNINRITEDNVNYHHLTLLAKDFEGYQNLMRIVS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              +         R+    L++    GLI L+G  +G +  A    + + A+   + ++ +
Sbjct: 122  AGFTEG-FYYKPRVDKEVLKKY-RCGLIALSGCLAGEVASALVKGNKKKAQNAAIEYRDI 179

Query: 178  FG-DRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  D  Y+ +  +    + +    +++L+ +  +PLVATN+  FL +ED E HD+L+ + 
Sbjct: 180  FDKDNFYIEIMDNGLETQKKIIPSLIELSKSAAIPLVATNDCHFLKKEDAEVHDILLCIG 239

Query: 236  HSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
               ++++  R     D  Y ++  +M+  FS +PEA++NT+EIA + +  +     +LP+
Sbjct: 240  TGKMLNETKRLHFDSDLFYYRSAEDMIKTFSSVPEAIKNTLEIAEKTNLEINTDKLLLPQ 299

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            F   +     K +   L      GL  R             ++ +RL  EL+VI +M F+
Sbjct: 300  FPIPKE---YKSDSEYLETLCRRGLAARY-------DTIKPEHEERLKHELSVINKMGFA 349

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFLIV+DFI++AK + IPVGPGRGSG+G++ AY L ITDI PL++ LLFERFLNPDR S
Sbjct: 350  SYFLIVSDFIKYAKDHRIPVGPGRGSGSGAMVAYTLGITDICPLKYGLLFERFLNPDRRS 409

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD DIDF    RDEVI+YV+ KYG E+ AQIITFGS+Q++  ++DV R +    ++ + 
Sbjct: 410  MPDLDIDFADYGRDEVIQYVRRKYGEEKCAQIITFGSMQSRLVIKDVARVMGFTPAESNN 469

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            + KLIP + +   +LQA  D S+  +A   D  + +L+  SQKLEGL RH   HAAG+VI
Sbjct: 470  IAKLIPQNASIAEALQASTDLSKLVKA---DEKIAKLIAASQKLEGLKRHTGVHAAGMVI 526

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             ++ ++   P+ +  + D+  TQ++   + + GL+K DFLGLKTLT++   + F+ ++  
Sbjct: 527  ANKEITSYSPLAKGSK-DIVTTQYDGGVLPQLGLLKIDFLGLKTLTIIDDCVKFIREKNP 585

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              +L  IP DD +TY LL    T+GIFQLES GMR  ++ ++P  I+DIIAL++LYRPGP
Sbjct: 586  SFNLDNIPLDDKKTYELLGEAKTMGIFQLESIGMRDLIKKLKPSNIDDIIALIALYRPGP 645

Query: 655  IDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            + + +   + NRK+G+ KIV  HPL + +LK+T GVI+YQEQVM+++  L+G++  EAD 
Sbjct: 646  MGSGMLDNFVNRKHGRTKIVYDHPLQESILKDTYGVILYQEQVMKMSVALAGFTPGEADS 705

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LR+AM KKI E ++KQ+E+F+ G  + G++K I+  IF  +  F  YGFNKSH+AAY +I
Sbjct: 706  LRKAMSKKIPEVIEKQREKFVRGTKEKGVNKKISEKIFNNIVAFGGYGFNKSHSAAYGII 765

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNV-------EKIKKFCQDARQFNIQIMPPSVNTPC 825
            SY+TA++K +YP+E++ A    E+           K+  +  DA  F+I+++PP V    
Sbjct: 766  SYKTAYLKANYPLEYITALCNNEIGRPATKNNEESKLVAYLGDALAFDIKVLPPDVQYSD 825

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD----KPFDSLEDFCSRVDSKKLNRRV 881
              FK  D  I + + A+K VG      I ++  +    K F    DF  R+D K +N++ 
Sbjct: 826  GKFKTEDKNIRFGMLAVKNVGKGVTDSIEQSRIENGQLKSFKDWVDFLQRIDLKSINKKA 885

Query: 882  LESLVFAGALDCFGYS----RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            LESL+ AG  D FG      R +L+Q++D+    A  V++ R +    +F + K    D 
Sbjct: 886  LESLIKAGVFDSFGKDKFTIRGRLIQNIDSYADKAAKVKQYRESLQGFLFDNVKTITDDI 945

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL---RKMGIKGYEESVATIRGNN 994
            ++L++            E+ VLGFY SGHPL   K  +       +    +         
Sbjct: 946  LSLQEVKPLEPLEALNFEKEVLGFYISGHPLTHRKKDIIAYSNYRLDKLPQLKENADRKT 1005

Query: 995  IRLAAMVVSKQQK--KTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +R+A M+VS ++    TRK          +      A  FP
Sbjct: 1006 VRIAGMIVSVKKLTSTTRK-EPYARFKIEDLHGNVNALLFP 1045


>gi|326382578|ref|ZP_08204269.1| DNA polymerase III subunit alpha [Gordonia neofelifaecis NRRL
            B-59395]
 gi|326198697|gb|EGD55880.1| DNA polymerase III subunit alpha [Gordonia neofelifaecis NRRL
            B-59395]
          Length = 1178

 Score =  986 bits (2550), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/1065 (31%), Positives = 539/1065 (50%), Gaps = 52/1065 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  ++ +  +       AI +TD  N+F A EF   A   GI+P
Sbjct: 4    SFVHLHNHTEYSMLDGAAKMSPLFSEAERLGMTAIGMTDHGNMFGASEFYNTAKKHGIKP 63

Query: 70   IIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  I  +                +   +       + ++   A G + L +L S  
Sbjct: 64   IIGIEAYIAPESRFNTKRVLWGTRDQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSSLA 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF- 178
             +  Q  +  R+    + E   EG+I  TG  SG +           A +    ++++F 
Sbjct: 124  SIEGQLGKWARMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHDAEALEAAGKWQEIFG 182

Query: 179  GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +  Y+ L  H    ++   S ++ +     +  + TN+  +++    E+H+ L+ +   
Sbjct: 183  KENFYLELMEHGLEIEQRVRSGLLDVGRKLGIKPLVTNDCHYVTRGHAESHEALLCLQTG 242

Query: 238  TVVSQKDRPRVTPD-HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQV--HAPILP 293
              +S   R +   D +YLK+  EM +++ D+ P   ++T+EI  R     +V  H   +P
Sbjct: 243  KTLSDPTRFKFDGDGYYLKSAEEMRALWDDVVPGGCDSTLEIGERVQSYEEVYTHHDRMP 302

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             F   +       +E  L  + +AGL+ R        G    +Y  R ++EL+VI +M F
Sbjct: 303  IFPVPDGF----TQETWLAREVMAGLDRRF------DGNPPGEYVTRAEYELSVINQMGF 352

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL+V D I  A +  I VGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R+
Sbjct: 353  PAYFLVVGDLIAHALEVGIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERV 412

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471
            SMPD DIDF   RR E+I Y   K+GH++VAQ+ITFG+++ KAA++D  R    Q  ++ 
Sbjct: 413  SMPDIDIDFDDRRRGEMITYASQKWGHDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAI 472

Query: 472  VDRLCKL---------IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K          IP         +  A+ +  R     DP V R+ + +  LEGL 
Sbjct: 473  ADRITKALPPPIMAKDIPVWGITDPEHERYAEATEVRTLIETDPDVKRIYDTALGLEGLV 532

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R+A  HA  +++   PL+  +P+++  +    +T ++    E  GL+K DFLGL+ LT++
Sbjct: 533  RNAGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVI 592

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              +++ +   RG+ +DL  +P +D ++Y LL    TLG+FQL+ S MR  L  M+P   E
Sbjct: 593  GDAIENIKTNRGIDLDLDKLPLEDPKSYELLARGDTLGVFQLDGSAMRDLLRRMEPTGFE 652

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQV 695
            DI+A+++LYRPGP+  +    Y +RKNG++++  IHP ++     +L ET G+I+YQEQ+
Sbjct: 653  DIVAVLALYRPGPMGVNAHNDYADRKNGRQEVKPIHPELEEPLKEILAETFGLIVYQEQI 712

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQIAQ ++GYSL +AD+LRRAMGKK KE +D+  + F  G   NG S+     +++ +  
Sbjct: 713  MQIAQKVAGYSLGQADLLRRAMGKKKKEILDEAYDGFAEGMRGNGFSQEAITALWDTVLP 772

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSHAA Y ++S+ TA++K +YP E++A  +T   D+ +K   +  D R+  I 
Sbjct: 773  FAGYAFNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAIYLADCRKMGIT 832

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            ++PP VN    DF      I + LAAI+ VG+     I+ A  +   + +  D+  ++D 
Sbjct: 833  VLPPDVNASRADFAAVGEDIRFGLAAIRNVGSGVVSSIISAREEKGAYTNFSDYLGKIDV 892

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            +  +++V ESL+ AG  D  G+ R  L              +K       ++F       
Sbjct: 893  QACSKKVTESLIKAGGFDSLGHDRKGLFLVHSEAIDAVISTKKAEAIGQFDLFGGVGDDG 952

Query: 935  SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-- 988
                 +           +  +   E+ +LG Y SGHPL   +  +           +   
Sbjct: 953  GGASDVFAVKVPEDEWETKHKLALERDMLGLYVSGHPLAGLEHAIAAQTDTSITSLLEGS 1012

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               G  I +  ++ S  ++  +KG     V   +     E  FFP
Sbjct: 1013 VADGAQITIGGIISSVTRRVNKKGEPWAAVQLEDMVGGVEVYFFP 1057


>gi|229048311|ref|ZP_04193879.1| DNA polymerase III subunit alpha [Bacillus cereus AH676]
 gi|228723036|gb|EEL74413.1| DNA polymerase III subunit alpha [Bacillus cereus AH676]
          Length = 1108

 Score =  986 bits (2550), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1027 (36%), Positives = 590/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  +              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMF-GHFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNE----TSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL  R        G   + + +RLD ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRKRY-------GEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A +   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+  
Sbjct: 813  ATVTTLLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|228923349|ref|ZP_04086637.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            huazhongensis BGSC 4BD1]
 gi|228836303|gb|EEM81656.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            huazhongensis BGSC 4BD1]
          Length = 1108

 Score =  986 bits (2550), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1026 (36%), Positives = 591/1026 (57%), Gaps = 47/1026 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  +              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMF-GHFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIKNTIKIAERCQVEIPFHVNQLPKFPVPSNE----TSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL  R        G   + + +RLD ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRKRY-------GAPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A +   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
               Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF +   E 
Sbjct: 920  TAQYVKLAKELEIPSLAQAMRNKKKVQ-RAIVYITSVRVIRTKKFQKMAFITFCDQNDEM 978

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 979  EAVLFP 984


>gi|238063859|ref|ZP_04608568.1| DNA polymerase III, alpha subunit [Micromonospora sp. ATCC 39149]
 gi|237885670|gb|EEP74498.1| DNA polymerase III, alpha subunit [Micromonospora sp. ATCC 39149]
          Length = 1179

 Score =  986 bits (2549), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1073 (32%), Positives = 543/1073 (50%), Gaps = 66/1073 (6%)

Query: 10   SFVHLQVHSSYSLLEG------ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            SF HL VH+ YS+L+G        S      +      PA+A+TD  N+  A +F ++A 
Sbjct: 4    SFAHLHVHTEYSMLDGCGPGSRTSSP-----RPTGSGMPAVAMTDHGNMHGANDFYKQAM 58

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLI 113
            AAGI PI+G +  +  +                    +    +  + +  +   G   L 
Sbjct: 59   AAGITPILGVEAYVAPESRYHKARVKWGRPEQKSDDVSGNGAITHMTMWAANKTGLHNLF 118

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L SR  +     +  R+ +  + E   EG++  TG  SG +           A K    
Sbjct: 119  TLNSRASMEGHYVKWPRMDMELIAE-HAEGIMATTGCPSGAVQTRLRLGQFDEALKVASA 177

Query: 174  FKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            ++ +F  D  ++ L  H    +R     + ++     +P V TN+S +  E   EAHDVL
Sbjct: 178  YQDIFGRDNYFLELMDHGLDIERRVRDGLTEIGKKLGIPPVVTNDSHYTHEAQAEAHDVL 237

Query: 232  MAVAHSTVVSQKDRPRVTPDHYL-KNRSEMVSIFSD--LPEALENTVEIARRCSF--ILQ 286
            + V   + ++  +R R     Y  K+  +M ++ S     E   NT+ +A +     + +
Sbjct: 238  LCVQTGSNIADPNRFRFEGGGYFIKSAEQMRAVDSSQLWLEGCRNTLLVAEKVDPAGMFE 297

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
             H  ++PRF   E +     EE+  R +   GL  R   G             + ++EL 
Sbjct: 298  FH-NLMPRFPVPEGE----TEESWFRKETFKGLARRFPGGVPEGHVV------QAEYELG 346

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI +M F  YFL+VADFI WAK   I VGPGRGS AGS+ AYAL ITD+DP+   L+FER
Sbjct: 347  VIIQMGFPSYFLVVADFIGWAKSQGIAVGPGRGSAAGSLVAYALGITDLDPIPHGLIFER 406

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPD DIDF + RR EVI+YV +K+G ++VAQI TFG+++AKAA++D  R L 
Sbjct: 407  FLNPERVSMPDVDIDFDERRRGEVIKYVTDKWGEDKVAQIATFGTIKAKAAIKDSARVLG 466

Query: 467  MPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQK 517
             PY+  DR+ K +P       + L  I D            R    +DP V ++++ ++ 
Sbjct: 467  YPYAVGDRITKAMPPAVMGKDIPLSGIFDPKHPRYAEAGEIRGLYESDPDVKKVIDTAKG 526

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EGL R    HAAG+++   P+ + +P+ R     + +TQF+    E  GL+K DFLGL+
Sbjct: 527  IEGLIRQTGVHAAGVIMSAEPIIEHIPLMRRDSDGVIITQFDYPTCESLGLLKMDFLGLR 586

Query: 578  TLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT++  ++  +    G  +DL  +  DD   Y LL    TLG+FQL+   MR  L  M+
Sbjct: 587  NLTIIDDAVKNIQLNHGKDLDLLGLDLDDKAAYELLARGDTLGVFQLDGGPMRSLLRLMK 646

Query: 637  PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVII 690
            PD  EDI A+++LYRPGP+  D+   Y  RKNG ++I  IHP ++     +L  T G+I+
Sbjct: 647  PDNFEDISAVLALYRPGPMGVDSHTNYALRKNGLQEITPIHPELEEPLREILAPTHGLIV 706

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQV + AQ+L+GY+L +AD+LRRAMGKK KE +DK+   F  G  + G S      ++
Sbjct: 707  YQEQVQRAAQILAGYTLGQADLLRRAMGKKKKEILDKEFVPFRDGCRERGYSDEAIQAVW 766

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            ++L  FA Y FNK+H+AAY ++SY TA++K HYP E++AA +T   D+ +K+  +  + R
Sbjct: 767  DVLVPFAGYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKMALYLSECR 826

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFC 869
            +  IQ++PP VNT    F      I + LAAI+ VG      IM    D   +    DF 
Sbjct: 827  RMGIQVLPPDVNTSAGPFTPVGKDIRFGLAAIRNVGANVVASIMRCRQDKGEYADFYDFL 886

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            ++VD+   N++ +ESL+ AGA D  G++R  LL    +       V++       ++F  
Sbjct: 887  AKVDAVVCNKKTIESLIKAGAFDVMGHTRKGLLAVHADAIDAYADVKRKEAVGQYDLFGA 946

Query: 930  EKGTFSDK------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
              G           +     +  +   +   E+ +LG Y S HPL   + +L        
Sbjct: 947  GFGDAEAAGGSTTVMPTIGEAEWDKRDKLAFEREMLGLYVSDHPLFGLEHVLGAAADTTI 1006

Query: 984  EESVA---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                       G  + LA ++   Q++ T++G      T  + A   E  FFP
Sbjct: 1007 AALSEEGTVPDGAVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1059


>gi|188993898|ref|YP_001928150.1| DNA polymerase III alpha subunit [Porphyromonas gingivalis ATCC
            33277]
 gi|188593578|dbj|BAG32553.1| DNA polymerase III alpha subunit [Porphyromonas gingivalis ATCC
            33277]
          Length = 1228

 Score =  986 bits (2549), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1111 (33%), Positives = 580/1111 (52%), Gaps = 99/1111 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59
             FVHL VHS +SLL+G  ++N+++DK  AD  P IA+TD   +F   EF           
Sbjct: 3    PFVHLHVHSQFSLLDGQAAINDLVDKAIADGMPGIALTDHGAMFGIKEFYNYVEKKNSGH 62

Query: 60   --------------------------------------QKACAAGIQPIIGCQLDIDMQD 81
                                                  ++      +PI+GC+     + 
Sbjct: 63   NATLKDCRRELDQLNDSKSADMLTDEERNRIVKLQQKIEETKKLLFKPILGCEAYCARRT 122

Query: 82   NLKMTNQGKTPF-------PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
                 NQ   P+        +   ++LL     GY+ LI++VS  +   Q     RI   
Sbjct: 123  RFDKDNQIPDPYHPRRSIDASGWHLILLAKNLRGYKNLIKMVSYSWTEGQ-YYRPRIDRE 181

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR---- 190
             LQ+   EG+I+ +    G I +         AE+ +L FK+LFGD  Y+ +QRH     
Sbjct: 182  LLQKYH-EGIIVSSACLGGEIPQHIMAGEIAKAEEAILWFKELFGDDYYLEVQRHETHNP 240

Query: 191  -------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                      +     +++L     + ++ATN+  F +EED EAHD L+ ++    +   
Sbjct: 241  LGNQDVFPQQQRVNRVILELGKKLGVKVIATNDVHFCNEEDAEAHDRLICLSTGKDLDDP 300

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            +R R T   ++K  +EM +IF DLPE L NT+EI  +  F    +  ++P F        
Sbjct: 301  NRMRYTKQEWMKTTAEMSAIFEDLPETLSNTLEILDKVEFYSIDNKALMPDFPIPPE--- 357

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             K++++ LR     G   +  +        + + ++R+DFEL  I  M F GYFLIV DF
Sbjct: 358  YKDDDDYLRFLTYEGARRKYGEDL------SDEIKERIDFELETIKGMGFPGYFLIVQDF 411

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I  A+   + VGPGRGS AGS  AY L ITDIDP+++ LLFERFLNPDR+SMPD D+DF 
Sbjct: 412  IAAARSMGVSVGPGRGSAAGSAVAYCLGITDIDPIKYHLLFERFLNPDRISMPDIDVDFD 471

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D R E++R+V  KYG ERVA IIT+G++  K++++DV R  ++P  + +RL KL+P+  
Sbjct: 472  DDGRAEILRWVTEKYGKERVAHIITYGTMATKSSIKDVARVQRLPLPESNRLAKLVPDKI 531

Query: 484  ---AHPVSLQAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                     +AI      ++A L+   V R  L+ +Q LEG  R+   HA GI+IG   +
Sbjct: 532  PGEKKVNLKKAIEFVPELKQASLSSDKVMRDTLKYAQMLEGNVRNTGVHACGIIIGKTDI 591

Query: 540  SQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
            S +VP+     +D + +L VTQ+    IE+ GLIK DFLGLKTL++++++L  + +R  +
Sbjct: 592  SDVVPVSTAPDKDTKEELLVTQYEGSVIEQTGLIKMDFLGLKTLSIIKEALVNIKRRHGI 651

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +++  IP DD  TY L +   T+G FQ ES GM++ L  +QP   ED+IA+ +LYRPGP
Sbjct: 652  DLNIDTIPLDDPLTYKLYSDGRTIGTFQFESGGMQKYLRELQPSAFEDLIAMNALYRPGP 711

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RK+G+E I    P ++  LKET GV +YQEQVM +++ L+G++  ++D LR
Sbjct: 712  MDYIPSFIARKHGREPIDYDLPEMEEYLKETYGVTVYQEQVMLLSRKLAGFTRGQSDELR 771

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +AMGKK+ E+M+  K +F+ G +KNG  + +   I+    KFA Y FNKSHA  Y+ ++Y
Sbjct: 772  KAMGKKLIEKMNVLKVKFLEGGNKNGHPEEVLEKIWTDWEKFASYAFNKSHATCYSWVAY 831

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YP E++A +++  ++N+ +I K   + +   I ++ P VN   + F V  N 
Sbjct: 832  QTAYLKANYPAEYMAGALSRNLNNITEITKLMDECKSMKIGVLVPDVNESEMKFSVNANG 891

Query: 835  I-YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               + L+A+KGVG+     I+ E  A+  +  + DF  R++    NR+ +ESL  AGA D
Sbjct: 892  DIRFGLSAVKGVGSGAVEQIIAEREANGLYKDIFDFVERINLSACNRKTMESLALAGAFD 951

Query: 893  CFGYSRMQLLQ---------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
             F  SR + +           +  + +Y   V++ + ++  ++F  E+     +      
Sbjct: 952  SFALSREEYMAPPLTGREESYIQALMRYGSVVQEEKHSQSNSLFGEEEDLMIPRPQPSPT 1011

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIRGNNIRLAAMV 1001
               N   R   E+ ++G Y S +P+  Y+ IL         +     ++ G N+ LA +V
Sbjct: 1012 EPWNDLERLNKERELVGLYLSSNPMAQYQVILDHYCNTHAADLTDPDSLVGKNLVLAGIV 1071

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                Q  +R  +    +T  + +   E   F
Sbjct: 1072 TKAFQGISRSNNPYSKITLEDLSGTGEIPLF 1102


>gi|33519751|ref|NP_878583.1| DNA polymerase III, alpha chain [Candidatus Blochmannia floridanus]
 gi|33504096|emb|CAD83357.1| DNA polymerase III, alpha chain [Candidatus Blochmannia floridanus]
          Length = 1166

 Score =  986 bits (2549), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1053 (39%), Positives = 625/1053 (59%), Gaps = 45/1053 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P+FVHL V S YS+++G    N +L+K  +   PA+A+TD +NLF  ++F   +C  GI
Sbjct: 2    NPNFVHLHVRSDYSMIDGLSKTNALLEKAVSLNMPALALTDFSNLFGFIKFYDYSCKLGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G            +             +  LV   +GYQ L+EL+SR Y       
Sbjct: 62   KPIAGADF---------LIQDISCYSDNWSKLTCLVLNNQGYQHLVELISRAYKYKSNTN 112

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I  SWL E   EGLI+L+GG  G I +    N     EK LL + K F +R Y+ L 
Sbjct: 113  YPIIQRSWLMEY-NEGLILLSGGCDGDIGKYLLRNKRNDIEKTLLFYHKYFPNRYYIELI 171

Query: 188  RHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            R    ++       V+L+    LP+VATN+  F+ ++D++AH++ +A+    VV++  + 
Sbjct: 172  RTGRVHEESYLKLAVELSRIKGLPVVATNDVRFVEKKDFQAHEIRVAIHAGVVVNKIQQS 231

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + +   ++K+  EM  +F+D+PE+L NTVEIA+RC+F++    P LP+F          
Sbjct: 232  NKYSAQQFMKSSQEMCHLFNDIPESLVNTVEIAQRCNFMINFKGPFLPKFPTGSL----- 286

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              EN L  +A  GLE RL      +  +      Y  RL+ EL VI +M F GYFLIV +
Sbjct: 287  STENFLVTQARLGLEKRLKFLFPNSKERQVKRSVYDIRLNQELQVINQMGFPGYFLIVME 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K NNIPVGPGRGSGA S+ AY L IT++DP++F LLFERFLNP+R+SMPD DIDF
Sbjct: 347  FIQWSKDNNIPVGPGRGSGASSLVAYVLRITELDPIKFDLLFERFLNPERISMPDLDIDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI +V   YG   V+QIITFG++ AKAA+RDVGRAL  PY  V+RL KLIP +
Sbjct: 407  CMEHRDLVIDHVAQMYGSHAVSQIITFGTMAAKAAIRDVGRALGYPYVFVNRLAKLIPLE 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A    ++ +     D  V  L+++S +LEG+ R+ S HA G+VI    ++  
Sbjct: 467  PGMTLR-KACTTINQLKLMYNTDEEVKILIDLSYQLEGIIRNVSKHAGGVVIAPNKITDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVD 597
             P+Y D   +  +TQF+   IE+ GLIKFDFLGL+TLT + +++  +  R      +  +
Sbjct: 526  SPLYYDDNYNHSMTQFDKDDIERIGLIKFDFLGLRTLTTVNRAIKMINDRKSKSNSLICN 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++LIP +D  ++ LL T  T GIFQLES G++  ++ ++PD  ED+IAL++L+RPGP+ +
Sbjct: 586  INLIPLNDRNSFRLLQTAKTTGIFQLESKGIKMLIKRLKPDHFEDLIALIALFRPGPLQS 645

Query: 658  IV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +   + NRKNG+E I        H L+ P+LK T G+I+YQEQVMQIAQ+L+GY+L +A
Sbjct: 646  GMVDNFINRKNGREIISYPDVKWEHELLKPVLKSTYGIILYQEQVMQIAQVLAGYTLGKA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRA+GKK  E+M KQ+  F +GA +NGI++T++  IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DILRRAIGKKKYEDMVKQRAIFNAGAQRNGINQTLSKKIFDLMEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +ISYQT W+K HYP EF+A+ ++ +MDNV +I     + R+  ++++ P++N+    F V
Sbjct: 766  LISYQTLWLKAHYPAEFMASILSSDMDNVNRIIILIHECRRMGLKVLSPNINSSRYFFYV 825

Query: 831  GDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             +N+   Y + AIKG+G  +   I+ +   D  F SL DFC RVD+ K+N+R++E L+++
Sbjct: 826  NNNQEIVYGIGAIKGIGKLSIDSIVASRDCDGEFHSLFDFCVRVDNSKVNQRIIEKLIYS 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV--- 945
            GA D FG  R +L+ SL+     A    K +  +   IF  +    +   T+ K +    
Sbjct: 886  GAFDFFGIHRSELISSLNVTICQAIQYAKRKQCQQIGIFEDDIQEHTIVDTIPKCNSVIK 945

Query: 946  --ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR----GNNIRLAA 999
              +NS +    E+  LG Y + HP++ Y   +++  I    +    +R     N +    
Sbjct: 946  LHQNSLIILTKEKEALGLYLTDHPVNQYMNEVKQY-IPEISKIQNVLRKIVINNTVCTFG 1004

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++ S   K T+KG+ + +    +   + E   F
Sbjct: 1005 LLSSIHIKSTKKGNYMLFGILEDQYSQLEIIVF 1037


>gi|217962084|ref|YP_002340654.1| DNA polymerase III DnaE [Bacillus cereus AH187]
 gi|229141330|ref|ZP_04269868.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST26]
 gi|217066627|gb|ACJ80877.1| DNA polymerase III, alpha subunit [Bacillus cereus AH187]
 gi|228642111|gb|EEK98404.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST26]
          Length = 1108

 Score =  986 bits (2549), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1027 (36%), Positives = 585/1027 (56%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  K              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEEK-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    N    AE+    ++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLENKESQAEEVARAYQNMF-GNFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + +        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVPSNE----TND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  IHP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYIHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPTLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|42783781|ref|NP_981028.1| DNA polymerase III DnaE [Bacillus cereus ATCC 10987]
 gi|42739711|gb|AAS43636.1| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987]
          Length = 1108

 Score =  986 bits (2549), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1027 (36%), Positives = 586/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  K              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEEK-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYQNMF-GNFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + +        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPAFISKINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVPSNE----TND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+ R        G   + + +RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPTLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|229118095|ref|ZP_04247454.1| DNA polymerase III subunit alpha [Bacillus cereus Rock1-3]
 gi|228665318|gb|EEL20801.1| DNA polymerase III subunit alpha [Bacillus cereus Rock1-3]
          Length = 1108

 Score =  986 bits (2549), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1026 (36%), Positives = 587/1026 (57%), Gaps = 47/1026 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  K              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEEK-----------SYPLVLLAEDEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+   T++ +F D  Y+ LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKEDQAEEVACTYQNMF-DNFYMCLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISKVNVPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS   EA+ NTV+IA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHTEEAIYNTVKIAERCKVEIPFHVNQLPKFPVPSNE----TND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL  R        G   + + +RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  TYLRRACEEGLHKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+  + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERQHFVQGCLRNGYDETSADKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ +K +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEERESKMFEDLFEFCLRMPAKFVTERNLEAFVWSGCFDDFGISRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
               Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF +   E 
Sbjct: 920  TAQYVKLAKELEIPSLAQAMRNKKKVQ-RAIVYITSVRVIRTKKLQKMAFITFCDQNDEM 978

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 979  EAVVFP 984


>gi|229099065|ref|ZP_04229999.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-29]
 gi|228684293|gb|EEL38237.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-29]
          Length = 1108

 Score =  986 bits (2548), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1026 (36%), Positives = 588/1026 (57%), Gaps = 47/1026 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  K              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEEK-----------SYPLVLLAEDEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+   T++ +F D  Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKEDQAEEVACTYQNMF-DNFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISKVNVPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS   EA+ NTV+IA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHTEEAIYNTVKIAERCKVEIPFHVNQLPKFPVPSNE----TND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL  R        G   + + +RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  TYLRRACEEGLHKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+  + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERQHFVQGCLRNGYDETSADKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ +K +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEERESKMFEDLFEFCLRMPAKFVTERNLEAFVWSGCFDDFGISRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
               Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF +   E 
Sbjct: 920  TAQYVKLAKELEIPSLAQAMRNKKKVQ-RAIVYITSVRVIRTKKLQKMAFITFCDQNDEM 978

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 979  EAVVFP 984


>gi|332044617|gb|EGI80811.1| DNA polymerase III, alpha subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 1453

 Score =  986 bits (2548), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1080 (33%), Positives = 553/1080 (51%), Gaps = 68/1080 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------SQ 60
            ++  FVHL  HS +S+L+  +S+ +I+   A    PA+A+TD  N+  A  F        
Sbjct: 257  QAVDFVHLHNHSQFSVLQSTMSVADIVAVAAEHNMPAVALTDHANMMGAFHFVNAVNKHN 316

Query: 61   KAC------AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            KA       A  I+PI+GC+        +   +  K+       IVL+     GY  L +
Sbjct: 317  KAVEGKTTDAKKIKPIVGCEFF------VCENHLDKSRKDNGYQIVLIAKNKNGYHNLAK 370

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  +  D      RI    L E   E LI LTG   G +           AE+ L+ +
Sbjct: 371  LSSHAFT-DGFYYVPRIDKK-LIEQYKEDLICLTGNLYGEVPSKVLNVGENQAEEALIWW 428

Query: 175  KKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            K+ F D LYV L RH   D  R    ++ LA  H++ LVATNN+ +  +ED  AHD+L+ 
Sbjct: 429  KETFQDDLYVELMRHNQEDENRVNPTLISLAKKHDVKLVATNNTYYAKQEDANAHDILLC 488

Query: 234  VAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            V      +                ++Y K+   M +IF D+P+A+ N  E+  +      
Sbjct: 489  VKDGEKQATPIGRGRGYRYGLPNQEYYFKSAEAMKNIFKDVPDAIINIQEVVDKIEGFQL 548

Query: 287  VHAPILPRFIEKEC--------DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                +LP F   E         D  ++ E   LR+    G + R  +        +++  
Sbjct: 549  ARDVLLPAFDIPEEFQHKEDLEDGGKRGENAFLRHLTYEGAKKRYGEEL------SEEVV 602

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RLDFEL+VI +  + GYFLIV DFI+ A+  ++ VGPGRGS AGSV AY L IT+IDP+
Sbjct: 603  ERLDFELSVIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVVAYCLWITNIDPM 662

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
            +++LLFERFLNPDR+SMPD DIDF  + R  V+ YV  KYG  +VAQIIT+G++ AK+++
Sbjct: 663  KYNLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIEKYGSNQVAQIITYGTMAAKSSI 722

Query: 459  RDVGRALQMPYSQVDRLCKLIP--NDPAHPVSLQAIADDSRFREARLA-----------D 505
            RD  R L +P    DR+ KLIP  +       L      S+FR   L            +
Sbjct: 723  RDTARVLDLPLFDADRIAKLIPTMSKLGKIFGLSEKELGSKFRAEDLEKINELLNISEGE 782

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
                  + I++ LEG  R+   HA G++I    +++ VP+     SDL VTQF+   +E 
Sbjct: 783  DLQAETVNIARSLEGSVRNTGIHACGVIITPDDITKFVPVSVAKDSDLYVTQFDNSVVED 842

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            AGL+K DFLGLKTLTL++ ++  +  + G+ +D    P DD ETY L     T+G+FQ E
Sbjct: 843  AGLLKMDFLGLKTLTLIKDTVKIVKAKHGITLDPENFPLDDEETYALFQRGETVGVFQYE 902

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S GM++ L+ ++P   +D+IA+ +LYRPGP++ I  +  RK+G E I    P ++  LKE
Sbjct: 903  SPGMQKHLKDLKPTVFDDLIAMNALYRPGPMEYIPSFVRRKHGDEDIEYDLPAMEEYLKE 962

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK    +DK K +FI  AS  G    
Sbjct: 963  TYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQASAKGHDAK 1022

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
                I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA ++  M++++++  
Sbjct: 1023 KLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMNDIKQVTF 1082

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862
            F ++ ++  + ++ P VN     F V  DN + + + AIKGVG      I++    D P+
Sbjct: 1083 FMEECKRMKLPVLGPDVNESYYKFSVNKDNAVRFGMGAIKGVGHGAVMTIVDNRKKDGPY 1142

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ-------SLDNIQKYAQW 914
             S+ D   R+D +  N++  E+L  AG  DCF    R Q           L+   KY   
Sbjct: 1143 KSIFDIAKRIDLRAANKKAFENLALAGGFDCFTDTHRAQYFHKEGSDLTFLEKAIKYGAK 1202

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
             ++N  +   ++F         +  +       +  +   E+ V+G Y SGHPLD ++  
Sbjct: 1203 HQENENSAQVSLFGGGSDVQIAEPEVPPCETWGTMEKLAQEREVVGVYISGHPLDDFRTE 1262

Query: 975  LRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++            +      +I    +V   Q + +++G      T  +    +E   F
Sbjct: 1263 MKNFCTGTIAYFNDLHEHVNKDITFGGVVTDVQHRVSKQGKGWALFTIEDYTDSFEFRIF 1322


>gi|153951559|ref|YP_001398338.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. doylei
            269.97]
 gi|152939005|gb|ABS43746.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. doylei
            269.97]
          Length = 1200

 Score =  986 bits (2548), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1058 (36%), Positives = 590/1058 (55%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKKQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTFKKLFGD 180
            I    L++   EGLI  +    G ++            F     + A++  L +KK+F D
Sbjct: 118  INKKLLEDY-NEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
            ++  DR R +  + Y+K+  +M  +F D+PEA+ENT E+A++C+  L +  P  P F   
Sbjct: 237  LNDPDRMRHSVHEFYVKSPEQMSELFVDIPEAIENTQEVAQKCNLELNLGNPTPPNFKFT 296

Query: 296  --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                K+ +    EE  E                GLE RL     +K    ++Y+QRL+ E
Sbjct: 297  REYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEERLKFIDESKH---EEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +   A   + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDA-AYEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R    +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A ++++L+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWDLIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E + V+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENKVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGKDAIIYGLGAIKSVGIAPVENLLEARQDGEFKDINDFLGKIDPA 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LE+L+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLENLIKAGAFDEFGFTRKALFDNIENLTEASRKIAEVRKNAASSLFGEEELTSG 952

Query: 936  DKIT-LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++  + K        +   E+ +LG Y SGHPLD +   +  +      +         
Sbjct: 953  VQVNFIPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFEGLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|213019585|ref|ZP_03335391.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Culex
            quinquefasciatus JHB]
 gi|212995007|gb|EEB55649.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Culex
            quinquefasciatus JHB]
          Length = 1118

 Score =  986 bits (2548), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/1025 (45%), Positives = 653/1025 (63%), Gaps = 48/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS YSLLE ++ +  ++     ++ PA+A+TD+ NLF +LEF++ A   GIQ I
Sbjct: 14   FIHLRVHSVYSLLESSVKIEELIGLCLQNKMPAVAVTDSGNLFGSLEFAEYAANKGIQLI 73

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-V 129
            +GC + +                    SI+LL    +GY  L+ LVS  +   +      
Sbjct: 74   VGCNIIV-------------RHLEQNLSILLLAKNEQGYTNLVTLVSESFKKRKNSSDIP 120

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L      GLI LTG   G + +       +  EK L      F   LYV LQRH
Sbjct: 121  YVDFDELLSF-NTGLIALTG---GCLAQLLLEQDKETVEKLLSA----FDGHLYVELQRH 172

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E  ++  AY   +PLVATN+  F +  DYEA+D+L  ++  +   + +R ++
Sbjct: 173  GLNKELELEEALIDFAYQRNIPLVATNDVFFSNRSDYEAYDILTCISEGSYALENNRKKL 232

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T +HY K+ +EM  +FSD+PEA+ NT+ IA+RCS++ +   PILP+F  +E     K E 
Sbjct: 233  TTEHYFKSVAEMEELFSDIPEAIYNTLVIAKRCSYMPRSRQPILPKFPCREN----KTEN 288

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             ELR +AVAGLE R+A          + Y  RL++EL+VI  M ++GYFLIV+DFI+W+K
Sbjct: 289  EELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSK 345

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N IPVGPGRGSGAGS+ A++L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD
Sbjct: 346  ANGIPVGPGRGSGAGSIVAWSLQITDLDPIKFGLIFERFLNPDRVSMPDFDIDFCQEKRD 405

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI YVQ KYG   VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+
Sbjct: 406  LVIDYVQKKYG--YVAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVT 463

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L QAI  D   ++ R +D  + +LL+IS KLEG+YRH STHAAGIVI D+ L   VP+Y 
Sbjct: 464  LSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYY 523

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D  S LP+TQ++MK++EKAGLIKFDFLGL TLTL+      + +   K D+S +   D  
Sbjct: 524  DPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDKKKFDISSVSLIDQR 583

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L+   ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  RK+G
Sbjct: 584  TYEMLSRGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHG 643

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             EK   IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIK EMDK
Sbjct: 644  LEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKAEMDK 703

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+E F+ GA+KNG+    A  IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +YP+EF
Sbjct: 704  QRELFVQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAIISYQTAYLKANYPLEF 763

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A M L +D+ +K+  F   A+   + ++ P ++    +F +G   I Y +AA++ VG 
Sbjct: 764  FTALMNLNIDDRDKLNLFYHAAKFSGVAVLSPDISKSKAEFSIGGEHIRYGIAALRNVGF 823

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A  I+ A +   +  + +F   +    +N+R LESL+ +G  D    +R QL +S+D 
Sbjct: 824  AIAEGIVNARSSS-YKDIWEFIQNLGHI-INKRALESLIKSGTFDSVHKNRKQLYESIDT 881

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  +A    KNR +    +F H       K  LE     N   + E+E   LGFY + HP
Sbjct: 882  LIYFAN---KNRQSNQAALFGHLDIL---KPKLENVEDFNEEEKLEHELFSLGFYLTNHP 935

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L+ ++ +L+K+ I    ES        I+ A ++++ + + + +G R   +T S+P    
Sbjct: 936  LEKFRTLLKKLNIGFIGES------KTIKTAGVILNVRMRTSERG-RFVILTLSDPHNVS 988

Query: 1028 EANFF 1032
            E  F+
Sbjct: 989  EIAFY 993


>gi|222098066|ref|YP_002532123.1| DNA polymerase iii dnae [Bacillus cereus Q1]
 gi|221242124|gb|ACM14834.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
          Length = 1108

 Score =  986 bits (2548), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1027 (36%), Positives = 587/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  K              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEEK-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMF-GNFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVPANE----TND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+ R        G   + + +RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  IHP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYIHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPTLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|324328496|gb|ADY23756.1| DNA polymerase III DnaE [Bacillus thuringiensis serovar finitimus
            YBT-020]
          Length = 1108

 Score =  986 bits (2548), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1027 (36%), Positives = 586/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  K              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEEK-----------PYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMF-GNFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVPANE----TND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  TYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIMQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|111018082|ref|YP_701054.1| DNA polymerase III subunit alpha [Rhodococcus jostii RHA1]
 gi|110817612|gb|ABG92896.1| DNA-directed DNA polymerase III alpha subunit [Rhodococcus jostii
            RHA1]
          Length = 1178

 Score =  986 bits (2548), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/1067 (31%), Positives = 549/1067 (51%), Gaps = 53/1067 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL  H+ YS+L+GA  +  + ++       A+ +TD  N++ A EF  +A   GI
Sbjct: 2    ADSFVHLHNHTEYSMLDGAAKVGPLFEEAERLGMSAVGMTDHGNMYGASEFYNEAKKQGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIG +  I  +                    +       + ++   A G + L +L S
Sbjct: 62   KPIIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +  Q  +  R+    L     EG+I  TG  SG I         + A +    ++++
Sbjct: 122  LASIEGQLGKWARMD-EELIATHHEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI 180

Query: 178  F-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            +  D  ++ L  H    +R     +++++   E+P +ATN+  ++++E  E H+ L+ + 
Sbjct: 181  WGKDNFFLELMDHGLSIERRVREGLLEISKKLEIPPLATNDCHYVTKEAAENHEALLCIQ 240

Query: 236  HSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQV--HAPI 291
                +S   R +   D +YLK  +EM +++ D +P A +NT+ IA R      V  H   
Sbjct: 241  TGKTLSDPTRFKFDGDGYYLKPAAEMRALWDDQVPGACDNTLLIAERVQSYDDVWAHHDR 300

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +P F   E +         LR + + GL+ R   G        ++Y  R D+E+ VI  M
Sbjct: 301  MPIFPVPEGETQGT----WLRKEVMRGLDRRFPDGP------PEEYLARADYEIGVILEM 350

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFL+V D I  A++  I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+
Sbjct: 351  GFPAYFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPE 410

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPY 469
            R+SMPD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAA++D  R    Q  +
Sbjct: 411  RVSMPDIDIDFDDRRRGEMVRYATDKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGF 470

Query: 470  SQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEG 520
            +  D++ K +P    A  +S+  I D +          R    ++P V ++ + ++ LEG
Sbjct: 471  AIADQITKALPPPIMAKDISVSGITDPNHERYKEAVEVRALIDSNPDVAKIYQTAKGLEG 530

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R+A  HA  +++   PL   +P+++  +    +T ++    E  GL+K DFLGL+ LT
Sbjct: 531  LIRNAGVHACAVIMSSEPLMDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLT 590

Query: 581  LLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  ++D +   RG+ +DL  +  DD  TY LL+   TLG+FQL+ S MR  L  MQP  
Sbjct: 591  VIGDAIDNIKANRGIDLDLDTLALDDQATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTG 650

Query: 640  IEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQE 693
             EDI+A+++LYRPGP+       Y +RKNG++++  IHP ++     +L +T G+I+YQE
Sbjct: 651  FEDIVAVLALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKEILADTYGLIVYQE 710

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            Q+MQIAQ ++GYSL +AD+LRRAMGKK    +++    F  G   N  S+     +++ +
Sbjct: 711  QIMQIAQKVAGYSLGQADILRRAMGKKKLSVLEEAYAGFREGMLANEFSEPAIKALWDTI 770

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNKSHAA Y ++S+ T ++K +YP E++A  +T   D+ +K   +  D R+  
Sbjct: 771  LPFAGYAFNKSHAAGYGLVSFWTGYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKMG 830

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV 872
            I ++PP VN   V+F      I + + A++ VG      I++A  +K  F    D+ +++
Sbjct: 831  ITVLPPDVNESEVNFASVGEDIRFGMGAVRNVGANVVGSIIKARKEKSKFVDFSDYLNKI 890

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D+   +++V ESL+ AG  D  G+ R  L+    +        +K       ++F  +  
Sbjct: 891  DAAACSKKVTESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAIGQFDLFGGDDA 950

Query: 933  TFSDK----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
              S      + +      +S  R   E+ +LG Y SGHPL+  + +L           + 
Sbjct: 951  DESISSVFNVKIPD-EEWDSKHRLALEREMLGLYVSGHPLNGVEHVLSAQSDTAIPTILE 1009

Query: 989  --TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G  + +  ++ S  ++  + G         +     E  FFP
Sbjct: 1010 GDIKDGTQVTVGGILASVNRRINKNGLTWASAQLEDLTGGIEVLFFP 1056


>gi|49478699|ref|YP_038648.1| DNA polymerase III DnaE [Bacillus thuringiensis serovar konkukian
            str. 97-27]
 gi|49330255|gb|AAT60901.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
            konkukian str. 97-27]
          Length = 1108

 Score =  986 bits (2548), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1027 (36%), Positives = 586/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  K              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEEK-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +F D  Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMF-DNFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + +        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS   EA+ NTVEIA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHAEEAIYNTVEIAERCRVEIPFHVNQLPKFPVPSNE----TND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|108800053|ref|YP_640250.1| DNA polymerase III subunit alpha [Mycobacterium sp. MCS]
 gi|119869179|ref|YP_939131.1| DNA polymerase III subunit alpha [Mycobacterium sp. KMS]
 gi|126435686|ref|YP_001071377.1| DNA polymerase III subunit alpha [Mycobacterium sp. JLS]
 gi|108770472|gb|ABG09194.1| error-prone DNA polymerase, DnaE-like / DNA polymerase III, alpha
            subunit [Mycobacterium sp. MCS]
 gi|119695268|gb|ABL92341.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium sp. KMS]
 gi|126235486|gb|ABN98886.1| error-prone DNA polymerase, DnaE-like / DNA polymerase III, alpha
            subunit [Mycobacterium sp. JLS]
          Length = 1191

 Score =  986 bits (2548), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/1066 (31%), Positives = 540/1066 (50%), Gaps = 51/1066 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YS+L+GA  +  +L +    + PAI +TD  N+F A EF   A  AGI+PI
Sbjct: 12   FVHLHNHTEYSMLDGAAKVKPMLAEAQRLEMPAIGMTDHGNMFGASEFYNAATDAGIKPI 71

Query: 71   IGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            IG +  I      +                +   +   + ++   A G + L +L S   
Sbjct: 72   IGIEAYIAPASRFETKRVLWGDPSQKSDDVSGSGSYTHMTMVAENATGLRNLFKLSSLAS 131

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-G 179
               Q  +  R+    + E   EG+I  TG  SG +         + A +    ++++F  
Sbjct: 132  FEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHQREALEAAAKWREIFGP 190

Query: 180  DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               ++ L  H    +R     ++++     +P +ATN+  +++ +  + H+ L+ +    
Sbjct: 191  QNFFLELMDHGLDIERRVREGLLEIGQKLGIPPLATNDCHYVTRDASQNHEALLCIQTGK 250

Query: 239  VVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPI--LPR 294
             +S   R +   D +YLK+ +EM +++ S +P A ++T+ IA R      V AP   +P 
Sbjct: 251  TLSDPTRFKFDGDGYYLKSAAEMRALWDSQVPGACDSTLLIAERVQSYADVWAPRDRMPI 310

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            F   E  D    + + L ++ +AGL+ R    A++ G    DY +R ++E+ VI    F 
Sbjct: 311  FPVPEGHD----QASWLHHEVMAGLKRRF--SAVSGGVVPNDYIERAEYEIKVICDKGFP 364

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFLIVAD I +AK  +I VGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R S
Sbjct: 365  SYFLIVADLINYAKSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERPS 424

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQV 472
             PD DIDF   RR E++RY  NK+G +RVAQ+ITFG+++ KAAL+D  R    Q  ++  
Sbjct: 425  APDIDIDFDDRRRGEMLRYAANKWGSDRVAQVITFGTIKTKAALKDSARVHYGQPGFAIA 484

Query: 473  DRLCKL---------IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            DR+ K          IP       + +   + +  R     DP V  + E ++ LEGL R
Sbjct: 485  DRITKALPPPIMAKDIPVSGITDPTHERYKEAAEVRALIDTDPDVRTIYETARGLEGLVR 544

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
            +A  HA  +++   PL   +P++R  +    +T ++    E  GL+K DFLGL+ LT++ 
Sbjct: 545  NAGVHACAVIMSSEPLIDAIPLWRRPQDGAVITGWDYPSCEAIGLLKMDFLGLRNLTIIG 604

Query: 584  KSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
              ++ +   RGV +DL  +  DD + Y LL    TLG+FQL+   MR  L  MQP    D
Sbjct: 605  DCIENIKANRGVDLDLESLALDDPKAYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEFND 664

Query: 643  IIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVM 696
            I+A+++LYRPGP+       Y +RKNG++ I  IHP ++     +L ET G+I+YQEQ+M
Sbjct: 665  IVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKEILAETYGLIVYQEQIM 724

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
             IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++ +  F
Sbjct: 725  FIAQKVASYTMGKADALRKAMGKKKLEVLEAEYQGFREGMTANGFSEAAVKALWDTILPF 784

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  I +
Sbjct: 785  AGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRRLGITV 844

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK 875
            +PP VN    +F    + I + L A++ VG      ++   A+   +    D+ +++D  
Sbjct: 845  LPPDVNESVQNFASVGDDIRFGLGAVRNVGANVVASLVNTRAEKGKYSDFSDYLNKIDIA 904

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
              N++V ESL+ AGA D  G+ R  L     +        +K       ++F    G+ +
Sbjct: 905  ACNKKVTESLIKAGAFDSLGHPRKGLFLIHTDAVDSVLGTKKAEAMGQFDLFGSGDGSGA 964

Query: 936  DK------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-- 987
            D       I +          +   E+ +LG Y SGHPL+    +L           +  
Sbjct: 965  DAGDSAFSIKVPD-EEWEDKHKLALEREMLGLYVSGHPLNGVAHLLANQVDTQIPAILDG 1023

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   + +  ++ S  ++  + G         +     E  FFP
Sbjct: 1024 DVANDAQVLVGGILASVNRRVNKNGLPWASAQLEDLTGGIEVLFFP 1069


>gi|88658193|ref|YP_507712.1| DNA polymerase III, alpha subunit [Ehrlichia chaffeensis str.
            Arkansas]
 gi|88599650|gb|ABD45119.1| DNA polymerase III, alpha subunit [Ehrlichia chaffeensis str.
            Arkansas]
          Length = 1120

 Score =  985 bits (2547), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/1029 (45%), Positives = 668/1029 (64%), Gaps = 44/1029 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLL G + ++++++       PA+A+TD+ NLF +LEFS  A + G+QPI
Sbjct: 5    FVHLRSHSDYSLLHGMIKIDSLVNLCVQYNMPALALTDSGNLFGSLEFSDYASSLGVQPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC + +                 ++  +VLLV    GY  ++ LVS  +   Q  +  R
Sbjct: 65   IGCNIMMSYNG------------DSIGELVLLVKDQIGYNNIVNLVSNSFKDSQSNKVNR 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKKLFGDRLYVNLQR 188
            + L  L ++  +G+I+LTGG  G + +    N     + +K LL     F   LYV LQR
Sbjct: 113  VDLEKLIDL-KDGIIVLTGGHDGFLSQLLLGNVIDYGIIDKLLLA----FNGNLYVELQR 167

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    E  +V  AY  +LPLVATN+ LF  + D+ AHDVL  ++    ++Q+ R  
Sbjct: 168  HGMEEEKIIEKTLVNFAYEKDLPLVATNDVLFAKKNDFLAHDVLSCISDGNYIAQEGRKM 227

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T +HY K+  EM  +F D+PEA+ NTV IA+RCSF+ +   P+LP F         K E
Sbjct: 228  FTEEHYFKSSDEMYRLFKDIPEAVSNTVLIAQRCSFMPETRKPMLPHFPCSSG----KNE 283

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL ++A+ GL+ RL   +++    ++ Y +RL +EL++I  M ++GYFLIV+DFI W+
Sbjct: 284  SQELISQAINGLDNRLKSKSLSTEQVSKYY-ERLHYELDIIISMDYAGYFLIVSDFICWS 342

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++R
Sbjct: 343  KRNDIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQEKR 402

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV+ KYG   VA IITFG LQAKA LRDVGR +QMPY QVDR+CK+IP++P  PV
Sbjct: 403  DYVIEYVRKKYG--YVAHIITFGKLQAKAVLRDVGRVMQMPYFQVDRICKMIPHNPVKPV 460

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L +AI  D   ++ +  D +V +LLEIS KLEGLYRH S HAAGIVI DR L +L+P+Y
Sbjct: 461  TLSEAIEMDKNLQKEQDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRELEELLPLY 520

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ +    + + G  VD+S IP +D 
Sbjct: 521  YDSTSSLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICHLVNRGGHSVDISRIPLNDR 580

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L+   ++G+FQLESSGMR+ +  ++PD I DIIAL+SLYRPGP+DNI +Y  RK+
Sbjct: 581  KTYEMLSAGDSVGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNISIYIARKH 640

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G EK   IHP+++ +L+ET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKEEMD
Sbjct: 641  GFEKPDYIHPILEDVLRETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKEEMD 700

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+  FI+GA  NGI +  A  IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y +E
Sbjct: 701  NQRRTFINGAVSNGIEEEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANYTLE 760

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGV 845
            F  ASM L++ + +K++  C  A+   I+I+PP +N+  V F + G + I Y+L A+K V
Sbjct: 761  FFTASMNLDIMDKDKLEMLCHQAKLHGIEILPPDINSSKVLFTIEGASSIRYALGALKNV 820

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G  +A+ I++   D  +  + DF  RV +K +++R+LES++ AG LD    +R QL +S+
Sbjct: 821  GQHSAKEIVD---DVAYKDIWDFIDRVSTKCVHKRILESIIKAGVLDSIHSNRKQLFESV 877

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
                   ++ + N      ++F  +         L +        +  NE   +GFY + 
Sbjct: 878  FLFLDIIEYNKYNANFNQFSLFNDKN-----HYKLSETDDWTKEEKLNNEFSSIGFYLNH 932

Query: 966  HPLDVYKPILRKMGI--KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            HP++ YK +L K+ I    Y++  +    NN+ +  ++ + + + T K  +   VT S+P
Sbjct: 933  HPMENYKYLLDKLNIGFIHYDDKSSY---NNV-IVGIISNVKVRSTNK-DKFAVVTLSDP 987

Query: 1024 AKEYEANFF 1032
               +E  F+
Sbjct: 988  FNIHEIVFY 996


>gi|311899295|dbj|BAJ31703.1| putative DNA polymerase III subunit alpha [Kitasatospora setae
            KM-6054]
          Length = 1183

 Score =  985 bits (2547), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1070 (32%), Positives = 549/1070 (51%), Gaps = 56/1070 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SF HL VH+ YS+L+GA     +  +      PAIA++D  N+F A EF   A  + +
Sbjct: 2    ADSFAHLHVHTEYSMLDGAAKNGKLFAEAERLGMPAIAMSDHGNMFGAYEFFHAAAKSAV 61

Query: 68   QPIIGCQLDIDMQDNLKMT------------------NQGKTPFPTVPSIVLLVSTAEGY 109
            +PIIG +  +                            +  +       + +    A G 
Sbjct: 62   KPIIGIEAYVAPSSRFLKKQVFWAPGGQRPTGSDGEGGKDVSGGGRYTHMTMWAQNATGL 121

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            + L +L S   +        R+    L      G+I  TG  SG +         + A K
Sbjct: 122  RNLFKLSSLASMEG-YYMKPRMDRE-LIAANATGIIATTGCPSGEVQTRLRLGQYEEAVK 179

Query: 170  RLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                ++ +F  +  ++ L  H    +R   + +++LA    +PL+ATN+S +++ +  +A
Sbjct: 180  AAGAYQDIFGKENYFLELMDHGLSIERDVRADLLRLAKELGIPLLATNDSHYVTADQADA 239

Query: 228  HDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            HD L+ V         +R +     +Y+K   EM  +F DLPEA +NT+ IA R     +
Sbjct: 240  HDSLLCVGVGKNKDDPNRFKFNGSGYYVKTSEEMRELFRDLPEACDNTLAIAERIESYEE 299

Query: 287  VHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            V   +  +P+F   E +     + + LR K  AGL+ R           +Q+   R++ E
Sbjct: 300  VFTYVDRMPQFDVPEGE----TQASFLRKKIAAGLQHRYGDNP------SQEVLDRVELE 349

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            + VI  M F  YFL+VAD  Q+ + N IPVGPGRGS AGS+ +Y   IT +DPL   LLF
Sbjct: 350  MGVITPMGFDAYFLVVADICQYGRDNGIPVGPGRGSAAGSMVSYLTGITQLDPLEHDLLF 409

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R++ PD DIDF   +RD+++RYV +KYG    AQ+ TFG+++AKAA++D  R 
Sbjct: 410  ERFLNPERINPPDVDIDFDDRQRDQMVRYVTDKYGSAYTAQVNTFGTIKAKAAVKDANRI 469

Query: 465  LQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEIS 515
            L  P+S  DR+ K +P D     V L  + ++           R     +P V ++++  
Sbjct: 470  LGYPFSMGDRITKAMPPDVMGKGVPLADLFNEKHPRYNEGTEIRSLYENEPDVKKIIDTG 529

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
              +EGL R    HAA +++   PL +L+P++   +    +T F+    E  GLIK DFLG
Sbjct: 530  LGIEGLIRGTGVHAAAVILSSTPLLELIPLHMRDKDGTIITGFDYPSCEAMGLIKMDFLG 589

Query: 576  LKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L+ L ++   +  +   RGV VD+  IP DD  TY LL    TLG+FQL+   MR  L  
Sbjct: 590  LRNLGIIDHCIKIVKANRGVDVDIDNIPIDDPTTYQLLARGDTLGVFQLDGGPMRALLRL 649

Query: 635  MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQGV 688
            M+P    DI A+ +LYRPGP+       Y  RKNG+++I+ IHP ++     +L  T G+
Sbjct: 650  MKPTEFADISAVSALYRPGPMGMNSHTNYALRKNGQQEIIPIHPELEEPLKEVLGPTYGL 709

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQV + AQ+L+GYSL +AD+LRRAMGKK KE ++K+   F +G  + G S      
Sbjct: 710  IVYQEQVQRAAQVLAGYSLGQADLLRRAMGKKKKEVLEKEFVPFHAGCKERGYSDEAIQA 769

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++++L  FA Y FNKSH+AAY ++SYQTA++K +YP E++AA +T   D+ +K+  +  +
Sbjct: 770  VWDVLVPFAGYAFNKSHSAAYGLVSYQTAYLKANYPAEYMAALLTSVADDKDKMAIYLAE 829

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLED 867
             R   I+I+ P VN   VDF    + + + L A++ VG      ++    A   + S  D
Sbjct: 830  CRAMGIRILSPDVNESVVDFTAVGSDVRFGLKAVRNVGVPVIESLVATREAKGKYTSFAD 889

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F  +V+    N+R ++SLV AGA D  G++R+ L    ++       V+K +    +++F
Sbjct: 890  FLDKVELVVCNKRTVDSLVKAGAFDSLGHTRLSLSTVHESAIDAVTGVKKQQAIGQDDLF 949

Query: 928  AHEKGTFSDKITLE---KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            A   G  +  I L+                E+ +LG Y S HPLD  + IL K       
Sbjct: 950  AMLGGDDTPAIGLDFQLTDREWPRKQLLGLEREMLGLYVSSHPLDGAEHILTKNRDVSLV 1009

Query: 985  ESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + + + R    +RL+ ++    ++  + G+    +T ++     E  FFP
Sbjct: 1010 DLLNSGRTEGEVRLSGLITGVDRRINKAGNAWAIITLADRDGSIEVLFFP 1059


>gi|163753129|ref|ZP_02160253.1| DNA polymerase III, alpha subunit [Kordia algicida OT-1]
 gi|161326861|gb|EDP98186.1| DNA polymerase III, alpha subunit [Kordia algicida OT-1]
          Length = 1460

 Score =  985 bits (2547), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1091 (33%), Positives = 565/1091 (51%), Gaps = 77/1091 (7%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK- 61
            + L+ +P F HL  HS +S+L+   S+++++          +A+TD  N+  A  F ++ 
Sbjct: 255  EALKNAP-FSHLHNHSQFSVLQSTSSISDLVKAAGKYNMQGVALTDHANMMGAFHFVKEV 313

Query: 62   -------------ACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
                         A A G       ++PIIGC+        +   ++ KT       IVL
Sbjct: 314  SNYNKSIKAKIAEAEATGEAIDAQILKPIIGCEFF------VCENHEDKTRKDNGYQIVL 367

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
            L     GY  L ++ S  Y         RI  + +++   E +I+LTG   G +      
Sbjct: 368  LAKNKNGYHNLAKMSSIAYTKG-FYYVPRIDKNVIEQY-KEDVIVLTGNLYGEVPNKVLN 425

Query: 162  NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFL 220
                 AE+ LL +K+ F D LYV + RH   D  R ++ +V+LA  HE+ LVATNNS ++
Sbjct: 426  IGESQAEEALLWWKETFQDDLYVEIMRHNQEDENRVNEVLVRLAKKHEVKLVATNNSYYI 485

Query: 221  SEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALEN 273
            ++ED  AHDVL+ V      +                ++Y K+  EM ++F DLP+A+ +
Sbjct: 486  AQEDATAHDVLLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSPDEMKTLFKDLPDAILS 545

Query: 274  TVEIARRCSFILQVHAPILPRFIEKE--------CDDIQKEEENELRNKAVAGLEVRLAQ 325
              EI  +          +LP F   E         D  ++ E   LR+    G + R   
Sbjct: 546  IQEIVDKVEPFELARDVLLPAFDIPEEFQFEEDKIDGGKRGENKYLRHLTYEGAKKRY-- 603

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                 G    +  +RLDFEL  I    + GYFLIV DFI+ A+  ++ VGPGRGS AGSV
Sbjct: 604  -----GEITPEIEERLDFELGTIENTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSV 658

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV +KYG  +VAQ
Sbjct: 659  VAYCLWITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVIDKYGANQVAQ 718

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS--------- 496
            IIT+G++ AK+++RD  R L +P S+ DR+ KLIPN     +  ++ A+           
Sbjct: 719  IITYGTMAAKSSIRDTARVLDLPLSEADRIAKLIPNTKLAKIFGKSEAELKQKFRSEEVL 778

Query: 497  ---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                       D      + +++ LEG  R+   HA G++I    +++ VP+     SD+
Sbjct: 779  LINELINISEEDGLAAETVNMARVLEGSVRNTGIHACGVIITPDDITKFVPVALAKDSDM 838

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLL 612
              TQF+   +E AGL+K DFLGLKTLTL++ ++  +  +  V +D+  IP DD ETY L 
Sbjct: 839  YCTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKLVKYKHDVDIDIENIPLDDEETYALF 898

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
                T+G+FQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RK+G+E I 
Sbjct: 899  QRGETVGVFQYESPGMQKHMKSLKPTTFADLIAMNALYRPGPMEYIPSFIRRKHGEEDIE 958

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
                     L+ET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK K  +DK K +F
Sbjct: 959  YDLDACQEYLEETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQKAVLDKMKPKF 1018

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            IS AS  G ++     I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA +
Sbjct: 1019 ISQASAKGHAEDKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVL 1078

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTAR 851
            +  M++++ I  F ++ ++  + ++ P VN     F V D   + + + AIKGVG    +
Sbjct: 1079 SNNMNDIKTITFFMEECKRMKLDVLGPDVNESFYKFTVNDEGAVRFGMGAIKGVGHGAVK 1138

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS------ 904
             I++  ++  + S+ D   R+D +  N++  E+L  AG  D FG   R Q   +      
Sbjct: 1139 TIVKERSEGKYKSVFDLAKRIDLRAANKKAFENLALAGGFDSFGDTHRAQYFHTENDGIT 1198

Query: 905  -LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L+   KY    ++N+ +   ++F        ++  +       +  +   E+ V+G Y 
Sbjct: 1199 FLEKAVKYGAKFQENKNSAQVSLFGEASEVQIEEPKVPPCEEWGTMEKLAREKEVVGIYI 1258

Query: 964  SGHPLDVYKPILRKM--GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            SGHPLD +K  ++    G   Y   +       I  A +V   Q + ++ G      T  
Sbjct: 1259 SGHPLDDFKAEMKFFCKGDLSYFSRMEEYVNREIPFAGVVTEVQHRVSKNGKGWALFTVE 1318

Query: 1022 EPAKEYEANFF 1032
            + ++ YE   F
Sbjct: 1319 DYSESYEFRIF 1329


>gi|229175312|ref|ZP_04302827.1| DNA polymerase III subunit alpha [Bacillus cereus MM3]
 gi|228608144|gb|EEK65451.1| DNA polymerase III subunit alpha [Bacillus cereus MM3]
          Length = 1108

 Score =  985 bits (2547), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1027 (36%), Positives = 587/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  K              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEEK-----------SYPLVLLAENEMGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +F D  Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYQSMF-DNFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + +        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPAFMSRINVPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHINQLPKFPVPANE----TND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+ R        G   + + +RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+  + G ++DL  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGTQIDLRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEEREKKVFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|228935912|ref|ZP_04098722.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
 gi|228823680|gb|EEM69502.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
          Length = 1108

 Score =  985 bits (2547), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1027 (36%), Positives = 586/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  K              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEEK-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMF-GNFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + +        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVPSNE----TND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|206977128|ref|ZP_03238027.1| DNA polymerase III, alpha subunit [Bacillus cereus H3081.97]
 gi|206744613|gb|EDZ56021.1| DNA polymerase III, alpha subunit [Bacillus cereus H3081.97]
          Length = 1108

 Score =  985 bits (2547), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1027 (36%), Positives = 587/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  K              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEEK-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMF-GNFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVPANE----TND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+ R        G   + + +RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|229124170|ref|ZP_04253362.1| DNA polymerase III subunit alpha [Bacillus cereus 95/8201]
 gi|228659472|gb|EEL15120.1| DNA polymerase III subunit alpha [Bacillus cereus 95/8201]
          Length = 1108

 Score =  985 bits (2547), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1027 (36%), Positives = 586/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  K              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEEK-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMF-GNFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + +        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVPSNE----TND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|257460063|ref|ZP_05625167.1| DNA polymerase III, alpha subunit [Campylobacter gracilis RM3268]
 gi|257442504|gb|EEV17643.1| DNA polymerase III, alpha subunit [Campylobacter gracilis RM3268]
          Length = 1381

 Score =  985 bits (2547), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1066 (36%), Positives = 612/1066 (57%), Gaps = 55/1066 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             + HL +H+ YSLL+GA  ++ + + + +    A AITD  N+F A++F Q     GI+P
Sbjct: 3    DYTHLHLHTEYSLLDGANKVSELAELLQSRGTKACAITDHGNMFGAIDFYQTMKKHGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +   D++     G         ++LL     GY+ L+ L SR +L D      
Sbjct: 63   IIGIETYLHNHDDI-----GDKSDRQRYHLILLAKNETGYKNLMYLSSRAFL-DGFYYYP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRA---------FFFNSSQVAEKRLLTFKKLFGD 180
            RI    L+E  +EGLI  +   +G ++                 + A+K  L +K++FG+
Sbjct: 117  RINKKILKE-HSEGLICSSACLAGEVEFHLNRSERNLKRGAGGYEAAKKAALEYKEIFGE 175

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ + RH   ++   +  +++L+    + ++ATN++ +  ++  +AHDV   ++    
Sbjct: 176  DFYLEIMRHGIGEQLNVDKDLIRLSREIGVKIIATNDAHYSRKDRAKAHDVYQCISMGKT 235

Query: 240  VSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS----FILQVHAPILPR 294
            ++  DR   V  + Y+K+  EM  +F+D+PE +ENT EI ++C+    F  + +AP  P 
Sbjct: 236  INDGDRLKHVVSEFYVKSDEEMRRLFADIPEVIENTAEIVQKCNLKFAFDEKDYAPTPPN 295

Query: 295  F-------------IEKECDDIQKEEENELR-NKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            F             + +  +      ++ L  +    GL+ RL     AK    + YR+R
Sbjct: 296  FKFTIEYAARLGLSLPQPDERYSFANDDFLFDHLCREGLKERLKFIDPAKH---EIYRER 352

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L+ EL +I  M FSGY +IV DFI WAK ++IPVGPGRGS AGS+ AYAL ITD+DP+ +
Sbjct: 353  LEKELAIIKNMHFSGYMVIVQDFINWAKDHDIPVGPGRGSAAGSICAYALRITDLDPIPY 412

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            +LLFERFLNP R+SMPD D+DFCQ RR EVI YV ++YG   VAQ+ TFG L A+  +RD
Sbjct: 413  NLLFERFLNPSRISMPDIDVDFCQARRGEVIDYVIDQYGKFNVAQVATFGKLLARGVIRD 472

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V R   MP SQ D++ KLIP+     ++ QA   + + +E   ADP   ++ E +  LEG
Sbjct: 473  VARVCDMPLSQADKMAKLIPDKLGITLT-QAYDAEPKLKEFIDADPIAQQVWEFALGLEG 531

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKT 578
            L R+A  HAAG+VI + PL    P+++  + +    VTQ+   ++E   LIKFDFLGLK 
Sbjct: 532  LNRNAGMHAAGVVISNEPLWNKAPLFKQDKGEDARLVTQYTKNYLEDVDLIKFDFLGLKN 591

Query: 579  LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            L ++  +   + +R    +    I F+D +TY  + +  TLGIFQ+E +GM+     ++P
Sbjct: 592  LDVIDNAAKLVKRRYGRDIVWEEIDFNDRKTYETIQSGNTLGIFQIEGAGMQDLAMNLRP 651

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
            D  EDIIA++SLYRPGP+D I  +   K+G+ K   I P +  +L+ T G+I+YQEQVMQ
Sbjct: 652  DRFEDIIAMISLYRPGPMDLIPDFIRIKHGELKASYIFPELKEILEPTYGIIVYQEQVMQ 711

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            I Q + G+SL +AD++RRAMGKK ++++   +E+++SGA + G     A  +F+L+ KFA
Sbjct: 712  IVQKVGGFSLGDADLVRRAMGKKDEKKLAHMREQYLSGAKELGFDVAKADELFDLIMKFA 771

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             YGFNKSHAAAY++I++QTA++KT+YP EF+AA +T E  N +KI K+  +A +  I ++
Sbjct: 772  SYGFNKSHAAAYSMITFQTAYLKTYYPAEFMAALLTSEEGNTDKISKYIDEASRLGIGLL 831

Query: 818  PPSVNTPCVDFKVGDNRI-------YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
            PPS+N     F V D+          Y L AIKGVG     +I+E  ++  F S++DF S
Sbjct: 832  PPSINQSLRGFSVVDDENSKSGTSIIYGLGAIKGVGAAAIENILELQSEAKFQSIDDFAS 891

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RVD+ ++N++V+ESL++AGA+DC G SR+ ++Q+++NI +  + + + + +   ++F  +
Sbjct: 892  RVDNFRVNKKVIESLIYAGAMDCLGKSRLAMIQNMENILEVMKKITEIKKDAASSLFGED 951

Query: 931  KGTFSDKIT--LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
            +   S      ++           + EQ+ +G Y SGHPLD YK  +  +       + +
Sbjct: 952  EDMTSGMSVSFVDTDKEFPQGEILKFEQQTVGVYLSGHPLDDYKEEIEGIDY-TLSSAFS 1010

Query: 989  TIRGNNIRL--AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             I G++  +     +     + T+ G ++G +   +    +E   F
Sbjct: 1011 EIEGDSAEVLSVGRIEDLSTRMTKTGKKMGILNVLDLHGSFELAVF 1056



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 55/177 (31%), Gaps = 20/177 (11%)

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            +ED  +R+        +L  L   G+ +        +  +     +     E+ R     
Sbjct: 1025 IEDLSTRMTKTGKKMGILNVLDLHGSFEL------AVFDNALKAIENLSPQERERPYAFM 1078

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV-----LGFYFSGHPLDVYKPILRKMG 979
             I   +         L   S+ +     +N +        G + S +PL  Y   L  + 
Sbjct: 1079 -IKISKSAVGGAAYQLSFLSMMS----LQNARDASFRPHAGVFLSENPLKAYAAQLGAIA 1133

Query: 980  IKGYEESVATIRGNNIRL----AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 E        +  +       + +   + T+ G ++  +T  + A  +E + F
Sbjct: 1134 HTKSNEFDELAGDEDASVKILCVGKIENVHTRTTKSGKQMANLTVLDLAGSFEMSAF 1190


>gi|190571064|ref|YP_001975422.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Culex
            quinquefasciatus Pel]
 gi|190357336|emb|CAQ54766.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Culex
            quinquefasciatus Pel]
          Length = 1106

 Score =  985 bits (2547), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/1025 (45%), Positives = 653/1025 (63%), Gaps = 48/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS YSLLE ++ +  ++     ++ PA+A+TD+ NLF +LEF++ A   GIQ I
Sbjct: 2    FIHLRVHSVYSLLESSVKIEELIGLCLQNKMPAVAVTDSGNLFGSLEFAEYAANKGIQLI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-V 129
            +GC + +                    SI+LL    +GY  L+ LVS  +   +      
Sbjct: 62   VGCNIIV-------------RHLEQNLSILLLAKNEQGYTNLVTLVSESFKKRKNSSDIP 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L      GLI LTG   G + +       +  EK L      F   LYV LQRH
Sbjct: 109  YVDFDELLSF-NTGLIALTG---GCLAQLLLEQDKETVEKLLSA----FDGHLYVELQRH 160

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E  ++  AY   +PLVATN+  F +  DYEA+D+L  ++  +   + +R ++
Sbjct: 161  GLNKELELEEALIDFAYQRNIPLVATNDVFFSNRSDYEAYDILTCISEGSYALENNRKKL 220

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T +HY K+ +EM  +FSD+PEA+ NT+ IA+RCS++ +   PILP+F  +E     K E 
Sbjct: 221  TTEHYFKSVAEMEELFSDIPEAIYNTLVIAKRCSYMPRSRQPILPKFPCREN----KTEN 276

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             ELR +AVAGLE R+A          + Y  RL++EL+VI  M ++GYFLIV+DFI+W+K
Sbjct: 277  EELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSK 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N IPVGPGRGSGAGS+ A++L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD
Sbjct: 334  ANGIPVGPGRGSGAGSIVAWSLQITDLDPIKFGLIFERFLNPDRVSMPDFDIDFCQEKRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI YVQ KYG   VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+
Sbjct: 394  LVIDYVQKKYG--YVAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVT 451

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L QAI  D   ++ R +D  + +LL+IS KLEG+YRH STHAAGIVI D+ L   VP+Y 
Sbjct: 452  LSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYY 511

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D  S LP+TQ++MK++EKAGLIKFDFLGL TLTL+      + +   K D+S +   D  
Sbjct: 512  DPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDKKKFDISSVSLIDQR 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L+   ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  RK+G
Sbjct: 572  TYEMLSRGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             EK   IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIK EMDK
Sbjct: 632  LEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKAEMDK 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+E F+ GA+KNG+    A  IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +YP+EF
Sbjct: 692  QRELFVQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAIISYQTAYLKANYPLEF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A M L +D+ +K+  F   A+   + ++ P ++    +F +G   I Y +AA++ VG 
Sbjct: 752  FTALMNLNIDDRDKLNLFYHAAKFSGVAVLSPDISKSKAEFSIGGEHIRYGIAALRNVGF 811

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A  I+ A +   +  + +F   +    +N+R LESL+ +G  D    +R QL +S+D 
Sbjct: 812  AIAEGIVNARSSS-YKDIWEFIQNLGHI-INKRALESLIKSGTFDSVHKNRKQLYESIDT 869

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  +A    KNR +    +F H       K  LE     N   + E+E   LGFY + HP
Sbjct: 870  LIYFAN---KNRQSNQAALFGHLDIL---KPKLENVEDFNEEEKLEHELFSLGFYLTNHP 923

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L+ ++ +L+K+ I    ES        I+ A ++++ + + + +G R   +T S+P    
Sbjct: 924  LEKFRTLLKKLNIGFIGES------KTIKTAGVILNVRMRTSERG-RFVILTLSDPHNVS 976

Query: 1028 EANFF 1032
            E  F+
Sbjct: 977  EIAFY 981


>gi|206969546|ref|ZP_03230500.1| DNA polymerase III, alpha subunit [Bacillus cereus AH1134]
 gi|206735234|gb|EDZ52402.1| DNA polymerase III, alpha subunit [Bacillus cereus AH1134]
          Length = 1108

 Score =  985 bits (2547), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1027 (36%), Positives = 589/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  +              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMF-GHFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS  PE ++NT++IA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEVIQNTIKIAERCQVEIPFHVNQLPKFPVPSNE----TSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL  R        G   + + +RL+ ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRKRY-------GEPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A +   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP +  +L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKSILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|296140319|ref|YP_003647562.1| DNA polymerase III subunit alpha [Tsukamurella paurometabola DSM
            20162]
 gi|296028453|gb|ADG79223.1| DNA polymerase III, alpha subunit [Tsukamurella paurometabola DSM
            20162]
          Length = 1183

 Score =  985 bits (2546), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/1073 (31%), Positives = 545/1073 (50%), Gaps = 55/1073 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL  H+ YS+L+GA  ++ +  +       A+ ++D  N+F A +F   A  
Sbjct: 1    MPAQDSFVHLHNHTEYSMLDGAAKVDPLFAEAKRLGMTAVGMSDHGNMFGASDFYNTAVK 60

Query: 65   AGIQPIIGCQLDIDMQDNL--KMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIE 114
              I+PIIG +  I  +     K    G         +       + ++   A G + L +
Sbjct: 61   YDIKPIIGIEAYIAPESRFNTKRVRWGDPSQKSDDVSGSGAYTHMTMVAENATGLRNLFK 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S   +  Q  +  R+    + E   EG+I  TG  SG +         Q A +    +
Sbjct: 121  LSSLASIEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHEQEALEAAAKW 179

Query: 175  KKLF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +++F  +  Y+ L  H    +R     ++++     +  +ATN+  +++++  E+H  L+
Sbjct: 180  QEIFGKENFYLELMDHGIDIERRVREGLLEIGRKLGIKPLATNDCHYVTKDKAESHGALL 239

Query: 233  AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQV--H 288
             +     +S   R +   D +YLK+  EM  ++ + +P A ++TVEI  R     +V  H
Sbjct: 240  CIQTGKTLSDPTRFQFDGDGYYLKSAQEMRELWDAQVPGACDSTVEIGERVQSYKEVWEH 299

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +PRF   E       +E+ L ++ + GL  R   G         DY +R  +EL+VI
Sbjct: 300  KDRMPRFPVPEN----HTQESFLESEVMDGLNRRFPDGP------PPDYVERARYELSVI 349

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
              M F  YFL+V D I  A +  I VGPGRGS AGS+ A+AL IT+IDP+   LLFERFL
Sbjct: 350  NEMGFPAYFLVVGDLIAHAHEVGIRVGPGRGSAAGSLVAWALGITNIDPIPHGLLFERFL 409

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--Q 466
            NP+R+SMPD DIDF   RR E+I Y   K+G ++VAQ+ITFG+++ KAA++D  R +  Q
Sbjct: 410  NPERVSMPDIDIDFDDRRRGEMITYASEKWGSDKVAQVITFGTIKTKAAIKDSARVIYGQ 469

Query: 467  MPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQK 517
              YS  DR+ K +P    A  +S++ I D +          R+    DP V ++ +++  
Sbjct: 470  PGYSIADRITKALPPPIMAKDISVKGITDPAHERYKEAVEVRQLIETDPDVKKIYDMALG 529

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R+A  HA  +++   PL+  +P+++  +    +T ++    E  GL+K DFLGL+
Sbjct: 530  LEGLIRNAGVHACAVIMSCDPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLR 589

Query: 578  TLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT++  +L  +   RG+ +D+  +P DD  TY LL    TLG+FQL+   MR  L  MQ
Sbjct: 590  NLTVIGDALANIKHNRGIDLDMDQLPLDDETTYQLLQRGNTLGVFQLDGGPMRDLLRRMQ 649

Query: 637  PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVII 690
            P   EDI+A+ +LYRPGP+  +    Y +RKNG++++  IHP ++     +L ET G+I+
Sbjct: 650  PTKFEDIVAVGALYRPGPMGVNAHNDYADRKNGRQQVKPIHPELEEPLAEILSETFGLIV 709

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQ+MQIAQ ++GYSL +AD+LRRAMGKK KE +D+    F  G   NG S+     ++
Sbjct: 710  YQEQIMQIAQKVAGYSLGQADLLRRAMGKKKKEILDEAYGGFQQGMLDNGFSQPAITALW 769

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            E +  FA Y FNKSHAAAY ++SY TA++K +YP E++AA +T   D+ +K   +  D R
Sbjct: 770  ETVLPFAGYAFNKSHAAAYGLVSYWTAYLKANYPAEYMAALLTSVGDDKDKAAIYLGDCR 829

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFC 869
            +  I ++PP VN     F      I + + +++ VG      I+    +   F S  D+ 
Sbjct: 830  RLGITVLPPDVNESFHAFTSVGEDIRFGMGSVRNVGEGVVASIVNTREEKGNFTSFSDYL 889

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            ++++    +++V ESL+ AG  D   + R  L     +  +     +K       ++F  
Sbjct: 890  AKIEVAACSKKVTESLIKAGGFDSLEHPRKGLFLVHSDAIESVLSTKKAEAVGQFDLFGS 949

Query: 930  EKGTFSDKITLEKF-------SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
                      ++            +   +   E+ +LG Y S HPLD  + ++       
Sbjct: 950  MGDEGGGTEPIDDVFTIKVPDEEWDGKHKLALEREMLGLYVSAHPLDGVEHVIAAQTDTP 1009

Query: 983  YEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                V      G  + +  ++ S  ++  + G+        + +   E  FFP
Sbjct: 1010 IPAIVEGDVKDGTQVTVGGILQSVNRRVNKNGAPFASAQIEDLSGGIEVFFFP 1062


>gi|302561148|ref|ZP_07313490.1| DNA polymerase III, alpha subunit [Streptomyces griseoflavus Tu4000]
 gi|302478766|gb|EFL41859.1| DNA polymerase III, alpha subunit [Streptomyces griseoflavus Tu4000]
          Length = 1179

 Score =  985 bits (2546), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/1070 (32%), Positives = 542/1070 (50%), Gaps = 53/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ D         IA++D  NL  A +F   A  
Sbjct: 1    MSKPP-FTHLHVHTQYSLLDGAARLKDMFDACNEMGMSHIAMSDHGNLHGAYDFFHSAQK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +    + G   L  
Sbjct: 60   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWAVNSTGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EG++  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETIAQW-SEGIVASTGCPSGEVQTRLRLGHFDEALKAAADY 178

Query: 175  KKLF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  DR ++ L  H    +      ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIDIEHRVRDGLLEIGRKLGIPPLVTNDSHYTYAHEAVAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHA 289
             +     +S  DR +     +YLK+  EM +I S     +   NT  IA           
Sbjct: 239  CIQTGKNLSDPDRFKFDGTGYYLKSTDEMYAIDSSDAWQQGCANTRLIAEMVDTTGMFEK 298

Query: 290  -PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P+F   +       E +  + +   G+E R   G        +D +++ D+E++VI
Sbjct: 299  RDLMPKFDIPQG----YTEVSWFKEEVRRGMERRFPGGV------PEDRQKQADYEMDVI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFL
Sbjct: 349  IQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  P
Sbjct: 409  NPERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y+  DRL K +P D     + L  I D S          R     +P V ++++ ++ +E
Sbjct: 469  YAMGDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRAMYENEPDVKKVIDTAKGVE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   +GV +DL  +P DD +T+ LL    TLG+FQ +   MR  L  M+PD
Sbjct: 589  TIMDDAVKMVKANKGVDLDLLSLPLDDPKTFELLQRGDTLGVFQFDGGPMRSLLRLMKPD 648

Query: 639  CIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLID----PMLKETQGVIIYQ 692
              EDI A+ +LYRPGP  +D+   Y  RKN  ++I  IH  ++     +L  T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMDSHTNYALRKNKLQEITPIHKELEEPLREVLDVTYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F +GA KNG S      ++++
Sbjct: 709  EQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFTIFQAGARKNGYSDEAIQALWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H+AAY ++SY TA++K ++P E++A  +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAGLLTSVKDDKDKSAVYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
             I+++PP+VN    +F   GD+ I + L+A++ VGT     I++   A   + S  D+  
Sbjct: 829  GIKVLPPNVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIKCRRAKGKYTSFPDYLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +VD+   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F   
Sbjct: 889  KVDAVVCNKRTTESLIKAGAFDEMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGM 948

Query: 931  KGTFSDKITLEK-----FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                S +              + +     E+ +LG Y S HPL   + +L      G  +
Sbjct: 949  GEAESSEPGFGLDVTFTDDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGISQ 1008

Query: 986  SVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1009 LTGGDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFP 1058


>gi|196032965|ref|ZP_03100378.1| DNA polymerase III, alpha subunit [Bacillus cereus W]
 gi|196040926|ref|ZP_03108224.1| DNA polymerase III, alpha subunit [Bacillus cereus NVH0597-99]
 gi|218905831|ref|YP_002453665.1| DNA polymerase III, alpha subunit [Bacillus cereus AH820]
 gi|228948329|ref|ZP_04110612.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            monterrey BGSC 4AJ1]
 gi|195994394|gb|EDX58349.1| DNA polymerase III, alpha subunit [Bacillus cereus W]
 gi|196028380|gb|EDX66989.1| DNA polymerase III, alpha subunit [Bacillus cereus NVH0597-99]
 gi|218538695|gb|ACK91093.1| DNA polymerase III, alpha subunit [Bacillus cereus AH820]
 gi|228811316|gb|EEM57654.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            monterrey BGSC 4AJ1]
          Length = 1108

 Score =  985 bits (2546), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1027 (36%), Positives = 586/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  K              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEEK-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMF-GNFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + +        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVPSNE----TND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|301056108|ref|YP_003794319.1| DNA polymerase III subunit alpha [Bacillus anthracis CI]
 gi|300378277|gb|ADK07181.1| DNA polymerase III subunit alpha [Bacillus cereus biovar anthracis
            str. CI]
          Length = 1108

 Score =  984 bits (2545), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1027 (36%), Positives = 586/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  K              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEEK-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMF-GNFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + +        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVPSNE----TND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|256372403|ref|YP_003110227.1| DNA polymerase III, alpha subunit [Acidimicrobium ferrooxidans DSM
            10331]
 gi|256008987|gb|ACU54554.1| DNA polymerase III, alpha subunit [Acidimicrobium ferrooxidans DSM
            10331]
          Length = 1189

 Score =  984 bits (2545), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1071 (35%), Positives = 571/1071 (53%), Gaps = 55/1071 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  +N++L   AAD QPA+AITD  NL+ ALEF + A   G++P
Sbjct: 3    SFVHLHTHTEYSMLDGASRINDLLRAAAADGQPALAITDHGNLYGALEFYKAATRTGVRP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPT----------VPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  +      +   +      T             + LL     GY  LI+L SR 
Sbjct: 63   IIGLEAYMAGGSRFERPQRRGRLDDTGGESERGEKLYYHLTLLAENETGYHNLIQLSSRA 122

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF- 178
            +L        RI    L+E   EGLI LTG   G + +       + A     T +++  
Sbjct: 123  FLEG-YYYKPRIDFELLEE-HREGLIALTGCLGGLVLQHLLRGDEEGARTVAGTLREILG 180

Query: 179  GDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D ++V LQ H   ++ R   Q+++LA    L  VATN+S +   ED+E HD L+ V   
Sbjct: 181  PDNVFVELQDHGLAEQRRTNPQLLELAKHLGLRTVATNDSHYTHREDHETHDALLCVQTG 240

Query: 238  TVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              ++ ++R R    +HYLK+  EM   F ++PEA + T++IA RCS  L    P LP   
Sbjct: 241  ATINDQNRFRFEGSEHYLKSAEEMRERFREVPEACDATLDIAERCSLELTFGQPALPEID 300

Query: 297  EK---ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
                       +     L      G   R            +   +R+ +EL+VI  M F
Sbjct: 301  IPVRITGATYDERAGEYLAELVWQGARARYGNDLD------ETTSERIRYELSVIESMGF 354

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+V D I+ A++ +I VGPGRGS AGSV AY L IT IDPL + L+FERFLNP R 
Sbjct: 355  PGYFLVVWDLIRHAREAHIRVGPGRGSAAGSVVAYCLGITQIDPLAYDLIFERFLNPGRK 414

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
             MPD D+DF +  R E+IRY   +YGH+ VAQI+TF +++A+AA+RD  R L  PY+  D
Sbjct: 415  QMPDIDMDFDERYRGEMIRYAAERYGHDHVAQIVTFSTIKARAAVRDAARVLGYPYAVGD 474

Query: 474  RLCKLIPN-DPAHPVSLQA-----------IADDSRFREARLADPSVDRLLEISQKLEGL 521
            ++ K +P         L A            A  +  RE   +DP V R++++++ LEGL
Sbjct: 475  KIAKAMPPLVMGRDTPLAACLELTPGHEDGYAQAAALREMVESDPDVARVVQVAKGLEGL 534

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYR------DVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
             R    HAA +VI   PL++ +P+ R      D      VTQF M  +E+ GL+K DFLG
Sbjct: 535  RRQDGIHAAAVVISRDPLTEYLPIQRKPDPGQDPSEAPIVTQFEMHGVEELGLLKMDFLG 594

Query: 576  LKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L+TL+++ ++++ +   RGV +D+  I  DD  T+ +L     +G+FQLE   MRQ +  
Sbjct: 595  LRTLSVIDRAVELIRATRGVDLDIDAIALDDEATFAMLRAGDAIGVFQLEGGPMRQLMRQ 654

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            + P   ED+ ALV+LYRPGP+  +  V Y +RKNG++ +  +HP ++P+L++T G++IYQ
Sbjct: 655  LAPSRFEDVAALVALYRPGPMAANMHVDYADRKNGRKPVSYLHPDLEPVLRDTYGLMIYQ 714

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            E +M++AQ ++GYSL EAD LR+A GKKI+  +  ++E+FI+G   +G    +   +F++
Sbjct: 715  ESMMRVAQQIAGYSLEEADNLRKACGKKIRTLIAAEREKFIAGCVASGYGPELGTALFDI 774

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FADY FNKSHA  Y ++SYQTA++K ++PV+FLAA +T   D+ +K+  +  DA   
Sbjct: 775  IEPFADYAFNKSHAFGYGLVSYQTAYLKANFPVQFLAAILTSVRDDKDKLAVYLADAAAH 834

Query: 813  NIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLED 867
            +I ++ P VN   VDF V       +I + LAA++ VG    R I++      PF S  D
Sbjct: 835  HIAVLVPDVNASDVDFSVTSGPEGEQIRFGLAAVRNVGEGLVRSIIDERTRSGPFTSFAD 894

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F  RVD+  LNRR LESL+ AGA D FG+ R  L ++L+   +      + R     ++F
Sbjct: 895  FLLRVDASVLNRRTLESLIKAGAFDSFGHPRRALYEALEGALERVNERRRQRDRGLGSLF 954

Query: 928  AHEKGTFSDKITLE---KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                   S    L         ++      E+ +LG Y S HP+           +    
Sbjct: 955  EEPSEDESVVPDLRLDIGSVEWSTPELLAFERDMLGLYVSAHPMHGVNVDRLGRDVTPIL 1014

Query: 985  ESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +   T  G  + +   + +  Q+ TRKG  +  +   +     E   FP
Sbjct: 1015 DLIEADTPPGEPVTVVGAITALAQRTTRKGDLMATLRLEDLQAGIEVMVFP 1065


>gi|154148261|ref|YP_001407070.1| DNA polymerase III subunit alpha [Campylobacter hominis ATCC BAA-381]
 gi|153804270|gb|ABS51277.1| DNA polymerase III subunit alpha [Campylobacter hominis ATCC BAA-381]
          Length = 1213

 Score =  984 bits (2545), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1073 (35%), Positives = 594/1073 (55%), Gaps = 62/1073 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+G   ++N+   +      A+AITD  N+F A+EF +     GI+PI
Sbjct: 4    FTHLHLHTEYSLLDGVNKIDNLAKILKERGTKAVAITDHGNMFGAIEFYKTMKKNGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  I   D L               ++LL     GY+ LI L S+ +L D      R
Sbjct: 64   IGMEAYIHNHDKL-----DDKSDKQRFHLILLAKNEIGYKNLIYLSSKAFL-DGFYYYPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRA---------FFFNSSQVAEKRLLTFKKLFGDR 181
            I  + L+    EG+I      +G I                  + A+K  L +K++FGD 
Sbjct: 118  INKNLLR-AHHEGIICNAACIAGEIGFHLNLSERNIKRGAKGYEGAKKAALEYKEIFGDD 176

Query: 182  LYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ + RH    + R +  +++L+    + L+A+N++ + ++  ++  D+ + ++  +V+
Sbjct: 177  FYLEIMRHGYTSQLRIDDDLIRLSRETGIKLIASNDAHYTNQAGHDLQDIFVCLSTGSVL 236

Query: 241  SQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR----- 294
            S   R   T    Y+K   EM  IF+D+PE +ENT EIA +C+       P         
Sbjct: 237  SDPKRMHHTVRQLYVKTDEEMKEIFADIPEVIENTQEIANKCNLSFAFDDPNYHPTAPNF 296

Query: 295  -------------FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
                           E   +  +K ++         GL  RL   A  K    + Y+ RL
Sbjct: 297  KFTREKANLINLTLPEANEEYSKKNDDLLFETLCRDGLTKRLEFIAPEKH---EIYKARL 353

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + E+ +I +M F GY LIV DFI WAK ++IPVGPGRGS AGS+ AY+L ITD+DP+ ++
Sbjct: 354  EKEIQIIEKMGFGGYMLIVQDFINWAKDHDIPVGPGRGSAAGSLCAYSLRITDLDPIPYN 413

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNPDR+SMPD D+DF Q RR+EV  YV NKYG E VAQ+ TFG L A+  +RDV
Sbjct: 414  LLFERFLNPDRISMPDIDVDFAQARREEVFEYVSNKYGKENVAQVATFGKLLARGVIRDV 473

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQ-----------AIADDSRFREARLADPSVDR 510
             R  +MP  + D + KL+P      ++ +           A   + + ++    DP   +
Sbjct: 474  ARVCEMPLYKADAMAKLVPEQLGITLNGEGEPGSEKYKPGAFQLEPKIKDLVEQDPLAKK 533

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGL 568
            + + S  LEGL R+   HAAG+VI + PL   VP++R  +SD    +TQ+   ++E   L
Sbjct: 534  VWDYSLGLEGLNRNTGMHAAGVVISNDPLWNKVPLFRQTKSDDGHYITQYTKLYLEDVDL 593

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            IKFDFLGLK L ++  ++  + +R    +    I F+D +TY  + +  T GIFQ+ES G
Sbjct: 594  IKFDFLGLKNLDVIANAIKLIKRRYNKDIVWENIDFNDKKTYETIQSGNTFGIFQIESPG 653

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            M++   G++PDC EDIIA++S++RPGP++ I  +  RK+G+ K+  I P I  +L+ T G
Sbjct: 654  MQKLATGLKPDCFEDIIAMISIFRPGPMELIPDFIARKHGEAKVEYIMPEIKEILEPTYG 713

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQVMQI Q + G+SL EAD++RRAM KK ++++   +E+++ GA K G     A 
Sbjct: 714  IIVYQEQVMQIVQKIGGFSLGEADLVRRAMSKKDEKKLAHMREQYLDGAKKLGFDTNKAN 773

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             +F+L+ KFA YGFNKSHAAAY++I++QTA++KT+YP EF+AA +T E  N +K+  +  
Sbjct: 774  ELFDLIMKFASYGFNKSHAAAYSMITFQTAYLKTYYPAEFMAALLTSEESNADKVLTYID 833

Query: 808  DARQFNIQIMPPSVNTPCVDFKV-------GDNRIYYSLAAIKGVGTTTARHIMEASADK 860
            +A++  I I+PPS+N    +F V           I Y L AIKGVG     +I+E   +K
Sbjct: 834  EAKRLGITILPPSINKSIREFSVTDDENAPSKTAIIYGLGAIKGVGLAGIENIIELRDEK 893

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            PF++++DF SRVD+ K+N++V+E+L  AGA+DC G +R  LLQ+ +NI    +     R 
Sbjct: 894  PFETIDDFASRVDNFKVNKKVIEALTCAGAMDCLGKTRKALLQNSENIVDAMKKAAILRD 953

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                ++   ++  F  K+  E    E       + EQ+ +G Y SGHPLD +K  +  + 
Sbjct: 954  EATSSLNFGDESFFDIKVNFEDTKEEFKRKELLKLEQQSIGIYLSGHPLDDFKDEISSIN 1013

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 +   T  G  + +   + S  +K T+ G ++G ++  +    +E   F
Sbjct: 1014 YTSTTDFENTDDGEILCV-GKIESITKKITKSGKQMGIISVLDFGGIFEMTAF 1065


>gi|75760293|ref|ZP_00740343.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
            israelensis ATCC 35646]
 gi|74492203|gb|EAO55369.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
            israelensis ATCC 35646]
          Length = 1108

 Score =  984 bits (2545), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1027 (36%), Positives = 589/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  +              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMF-GHFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNE----TSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL  R        G   + + +RL+ ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRKRY-------GAPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAERVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A +   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D F  SR  L +S+  
Sbjct: 813  ATVTALLEERKKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFXVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|194017300|ref|ZP_03055912.1| DNA polymerase III subunit alpha [Bacillus pumilus ATCC 7061]
 gi|194011168|gb|EDW20738.1| DNA polymerase III subunit alpha [Bacillus pumilus ATCC 7061]
          Length = 1111

 Score =  984 bits (2545), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1026 (36%), Positives = 581/1026 (56%), Gaps = 39/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+VHLQVHS YSLL  A  +  ++ K       A+A+TD + ++  +EF ++    GI+P
Sbjct: 2    SYVHLQVHSGYSLLSSAAKVKELVLKAKELGCKALALTDDHVMYGTVEFYKECKKHGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +I           L  +            +VLL    EGYQ LI++ S +    + K   
Sbjct: 62   VI----------GLTASVFIDEQETEAYPLVLLAKNNEGYQNLIKISSVL----KSKSKA 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
             +   WL+     GLI +T G SG I+     +  + A       K +FG+  +Y+ LQ 
Sbjct: 108  GLKEKWLKSYHR-GLIAMTPGVSGYIETLLQHDQLEEAHDAAKQLKHIFGEGHVYIALQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +  D     ++  ++ + ++PLVAT +  +++ ED  A+  L A+     + + +  R 
Sbjct: 167  FQ-QDESLAGKLRDVSKSADIPLVATGDVHYINLEDKTAYMCLKAIKAGQQLPEVEEDRA 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + + +   EM   ++   E L  TVEIA RC   L +    LP +   +    Q   +
Sbjct: 226  --EKHFRTFEEMKEWYTQDTELLSRTVEIADRCEVDLNLGQTKLPSYPTPD----QSTAD 279

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR   V G++ R       K      Y +RL++EL++I +M FS YFLIV DF+++A 
Sbjct: 280  QFLRKVCVEGMKQR-------KIASNDAYVKRLEYELSIIQKMNFSDYFLIVWDFMKYAH 332

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I  GPGRGS AGS+ AY L ITD+DPLR  LLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 333  DQGIVTGPGRGSAAGSLVAYVLFITDVDPLRHGLLFERFLNPERISMPDIDIDFPDTRRD 392

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+I YV++KYG   VAQI+TFG+L AKAALRDVGR + +     DRL KLIP+ P   + 
Sbjct: 393  EIISYVKDKYGDMHVAQIVTFGTLAAKAALRDVGRVMGIDSKAADRLAKLIPSKPGTTLK 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+A     +        + ++ + + K+EGL RH STHAAG+V+ + PL+++VP+  D
Sbjct: 453  -EALAASPELKAMLQQSEELRQVFQTALKVEGLPRHTSTHAAGVVLSEEPLTEIVPIQ-D 510

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHE 607
                + +TQ+ M ++E  GL+K DFLGL+ LTL++   + +  Q  V ++ S I ++D +
Sbjct: 511  GHDGVYLTQYAMNYLEDLGLLKMDFLGLRNLTLIESIKNQIERQENVHINFSDISYEDQK 570

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL+   T GIFQLES GMRQ L  ++P  +EDI+A+ +LYRPGP++NI ++ +RK+G
Sbjct: 571  TFELLSAGDTTGIFQLESQGMRQVLRRLKPSSLEDIVAVNALYRPGPMENIPLFIDRKHG 630

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            + K+   HP +  +LK+T GVI+YQEQ+M IA  ++G+ L EAD+LRRA+ KK K+ +D+
Sbjct: 631  RVKVSYPHPDLYDILKDTYGVIVYQEQIMLIAAKMAGFQLGEADLLRRAVSKKDKKVLDE 690

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ G  K      IA ++++L+ KFA+YGFN+SHA AY++I +Q A++K HYP+ F
Sbjct: 691  ERSHFVEGCLKKEYPVNIANDVYDLIVKFANYGFNRSHAVAYSMIGFQLAYLKAHYPLYF 750

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N +K+ ++  +A++  I ++ PS+N     F V    I YSL AIK VG 
Sbjct: 751  MCGLLTSVIGNEDKVAQYFYEAKEKGISVLKPSINKSEFPFTVEKGEIRYSLRAIKNVGV 810

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +  + I  A  +KPF+ L DFC+RV +K +NR+ +E+L+F+GA+D    +R  LL S+D 
Sbjct: 811  SAVKDIYRARQEKPFEDLFDFCARVSAKSVNRKTIEALIFSGAMDELYPNRASLLASIDI 870

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
               +  ++     +   +       TFS K    +          + E+  LG Y S HP
Sbjct: 871  ALDHVSFL---NPDDQLDFLGDT--TFSIKPKYAEIEELPLVDLLQFEKEALGLYLSNHP 925

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            +  Y+  LR+ G        + I+   + +  ++   +  +T+ G  + ++TF +   E 
Sbjct: 926  VQAYRDRLRENGAVDIIRLSSYIK-RKVSMGGLLTKVKSIRTKNGQSMAFITFGDETGEM 984

Query: 1028 EANFFP 1033
            E   FP
Sbjct: 985  EGVVFP 990


>gi|183602396|ref|ZP_02963762.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis HN019]
 gi|219683289|ref|YP_002469672.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis AD011]
 gi|241191250|ref|YP_002968644.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis Bl-04]
 gi|241196656|ref|YP_002970211.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis DSM 10140]
 gi|183218315|gb|EDT88960.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis HN019]
 gi|219620939|gb|ACL29096.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
            lactis AD011]
 gi|240249642|gb|ACS46582.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis Bl-04]
 gi|240251210|gb|ACS48149.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis DSM 10140]
 gi|289177365|gb|ADC84611.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
            lactis BB-12]
 gi|295794243|gb|ADG33778.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis V9]
          Length = 1188

 Score =  984 bits (2544), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/1076 (31%), Positives = 544/1076 (50%), Gaps = 60/1076 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  FV L  H+ YSLL+GA  + +++         A+ ITD  N+  A E   +A  
Sbjct: 1    MTNSADFVQLHNHTHYSLLDGASKIPDLVKYTKELGMGAVGITDHGNMHGAYEMYTEAVK 60

Query: 65   AGIQPIIGCQLDIDMQ------DNLKMTNQGKTPFPT-----VPSIVLLVSTAEGYQRLI 113
              ++PIIG +  +  +        +    + +          +  + L     EG + LI
Sbjct: 61   QDVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTLWAEDDEGLRNLI 120

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
               S   L  +  +  R+    L    ++G+I  +G  SG +           A +    
Sbjct: 121  RASSVANLEGRVMRYPRMDKEVLSTY-SKGVICGSGCPSGIVQTRLRLGQFDEALRAAGE 179

Query: 174  FKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             + ++  D  ++ L  H    +R     ++++A     PL+ATN+S ++ EED  A D +
Sbjct: 180  LQDIYGKDNFFIELMDHNLEIERKVTKDLLEIAKKLGAPLLATNDSHYVHEEDAGAQDAM 239

Query: 232  MAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +   + +   DR +   + +Y+++  +M  +F DLPEA +NT+E+A RC+ +   H  
Sbjct: 240  LCINSGSHLDDPDRFKFDGEGYYMRSAQQMRELFRDLPEACDNTIEVAERCNVMFDDHED 299

Query: 291  --ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +P+F   E  D    E +    K   GLE R      A          + D+E  VI
Sbjct: 300  GAFMPKFPCPEGWD----ETSLFLKKVEEGLERRYEGNVPAH------VLAQADYECGVI 349

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M+F GYFL+VAD+IQWAK + I VGPGRGS AGS+ AYA+ IT++DPL   L+FERFL
Sbjct: 350  CQMQFPGYFLVVADYIQWAKDHGIMVGPGRGSAAGSMVAYAMGITELDPLEHGLIFERFL 409

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+S+PD D+DF  + R +VI Y  +KYGH++VAQ + +G+++ K AL+D  R +   
Sbjct: 410  NPERVSLPDIDVDFDPEGRLKVIEYCGDKYGHDKVAQCVIYGTIKTKQALKDSARIMGYE 469

Query: 469  YSQVDRLCKLIPN--DPAHPVSL--------QAIADDSRFREARLADPSVDRLLEISQKL 518
            +S  + + K +P        V L        +  A+   +RE   ++P   R+ + +  +
Sbjct: 470  FSMGELVTKALPPAATGGKDVPLHDIFDPGAKRYAEAREYRELYESNPDAKRITDEAMGI 529

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R    HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  
Sbjct: 530  EGLIRQTGVHACATIMGSEPITDTSPL-LERTDGTVTTTFEYHTCETLGLVKMDFLGLSN 588

Query: 579  LTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  +L  + A     +D + IP DD ETY LL+   TLG+FQL+S GMR  L+ ++P
Sbjct: 589  LTVIGDTLRNIEANGKEPIDHTKIPLDDKETYELLSRGDTLGVFQLDSDGMRALLKQLKP 648

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIY 691
            D   DI AL++LYRPGP+  D+   Y  RKNG +KI  IHP +      +L ET G+IIY
Sbjct: 649  DNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKIEPIHPELAEPLKEVLDETYGLIIY 708

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQV   A++L+GYSL +ADVLRRAMGKK  E + K++  F  G  ++G S+  A  +++
Sbjct: 709  QEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKEHGYSREAAQAVWD 768

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            +L  F+ Y FNK+H+AAY +ISY TA++KTHYP EF+AA +     N +K   +  +AR+
Sbjct: 769  VLVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPAEFMAALLQGASTNKDKTALYLGEARR 828

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFC 869
              I+++ P VN     +    + + + L AI+ VG      I+         + +  DF 
Sbjct: 829  MGIKVLSPDVNESVYAYSAVGDVVRFGLGAIRNVGEKAVADIIAERQGSHGRYVNFMDFI 888

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             RV    LNRR++ESL+ AGA D    +R  L Q  +        +++ +     ++FA 
Sbjct: 889  RRVPLTALNRRLVESLIKAGAFDSIDPNRRALYQIHEAAIDSVTDLKRKQATGQFDLFAD 948

Query: 930  EKGTFSD---------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                  D          I++      +   +   E+ +LG Y S HPL   + +L  +  
Sbjct: 949  LDAGADDGEAEALGDVSISVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVLASLRD 1008

Query: 981  KGYEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                + +         + + +A ++ +   + ++KG+R   VT  +     +   F
Sbjct: 1009 MSIAQLIDRAPTMPERSQVMVAGLITNVDSRVSKKGNRWAIVTIEDMESSIQCLLF 1064


>gi|47565015|ref|ZP_00236058.1| DNA polymerase III, alpha subunit [Bacillus cereus G9241]
 gi|47557801|gb|EAL16126.1| DNA polymerase III, alpha subunit [Bacillus cereus G9241]
          Length = 1108

 Score =  984 bits (2544), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1027 (36%), Positives = 588/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  K              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEEK-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFGK-FYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVPANE----TND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  TYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++ + PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSEEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|118479750|ref|YP_896901.1| DNA polymerase III DnaE [Bacillus thuringiensis str. Al Hakam]
 gi|118418975|gb|ABK87394.1| DNA polymerase III catalytic subunit, DnaE type [Bacillus
            thuringiensis str. Al Hakam]
          Length = 1108

 Score =  984 bits (2544), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1027 (36%), Positives = 583/1027 (56%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  +   K              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEQEEK-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE     ++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDEESQAEAVARAYQNMF-GHFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + +        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPAFMSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS  PEA++NT+ IA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIRIAERCQVEIPFHVNQLPKFPVPSNE----TSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+ R        G   + +  RL+ EL+VI+ M FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLQKRY-------GTPKEVHINRLNHELSVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIRFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|30264675|ref|NP_847052.1| DNA polymerase III DnaE [Bacillus anthracis str. Ames]
 gi|47530144|ref|YP_021493.1| DNA polymerase III DnaE [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187493|ref|YP_030746.1| DNA polymerase III DnaE [Bacillus anthracis str. Sterne]
 gi|65321971|ref|ZP_00394930.1| COG0587: DNA polymerase III, alpha subunit [Bacillus anthracis str.
            A2012]
 gi|165869605|ref|ZP_02214263.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0488]
 gi|167634005|ref|ZP_02392328.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0442]
 gi|167638118|ref|ZP_02396396.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0193]
 gi|170685920|ref|ZP_02877143.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0465]
 gi|170705551|ref|ZP_02896015.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0389]
 gi|177651072|ref|ZP_02933903.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0174]
 gi|190569023|ref|ZP_03021923.1| DNA polymerase III, alpha subunit [Bacillus anthracis Tsiankovskii-I]
 gi|227817389|ref|YP_002817398.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. CDC 684]
 gi|229600791|ref|YP_002868883.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0248]
 gi|254687412|ref|ZP_05151268.1| DNA polymerase III DnaE [Bacillus anthracis str. CNEVA-9066]
 gi|254724975|ref|ZP_05186758.1| DNA polymerase III DnaE [Bacillus anthracis str. A1055]
 gi|254736712|ref|ZP_05194418.1| DNA polymerase III DnaE [Bacillus anthracis str. Western North
            America USA6153]
 gi|254741749|ref|ZP_05199436.1| DNA polymerase III DnaE [Bacillus anthracis str. Kruger B]
 gi|254754653|ref|ZP_05206688.1| DNA polymerase III DnaE [Bacillus anthracis str. Vollum]
 gi|254757485|ref|ZP_05209512.1| DNA polymerase III DnaE [Bacillus anthracis str. Australia 94]
 gi|30259350|gb|AAP28538.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. Ames]
 gi|47505292|gb|AAT33968.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. 'Ames
            Ancestor']
 gi|49181420|gb|AAT56796.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. Sterne]
 gi|164714434|gb|EDR19953.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0488]
 gi|167513935|gb|EDR89303.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0193]
 gi|167530806|gb|EDR93508.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0442]
 gi|170129676|gb|EDS98539.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0389]
 gi|170670384|gb|EDT21124.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0465]
 gi|172082898|gb|EDT67960.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0174]
 gi|190559805|gb|EDV13790.1| DNA polymerase III, alpha subunit [Bacillus anthracis Tsiankovskii-I]
 gi|227004404|gb|ACP14147.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. CDC 684]
 gi|229265199|gb|ACQ46836.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0248]
          Length = 1108

 Score =  984 bits (2544), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1027 (36%), Positives = 586/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  K              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEEK-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMF-GNFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + +        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVPSNE----TND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDAK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|260555310|ref|ZP_05827531.1| DNA polymerase subunit III alpha [Acinetobacter baumannii ATCC 19606]
 gi|193077117|gb|ABO11893.2| DNA polymerase III alpha chain [Acinetobacter baumannii ATCC 17978]
 gi|260411852|gb|EEX05149.1| DNA polymerase subunit III alpha [Acinetobacter baumannii ATCC 19606]
          Length = 1187

 Score =  984 bits (2544), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1039 (36%), Positives = 582/1039 (56%), Gaps = 47/1039 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + +++     D+ PA+A+TD +NL +A++F       GI+PI
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  +                         LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   LGSTI---------------RLNDAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + +I+L G  S  + +    ++ Q AE  L  + + FG+R+Y+ L R  
Sbjct: 108  VQKEWVLEQH-QDIIVLLGQHS-DVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTD 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     +  +LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   RPR  
Sbjct: 166  RPGEEDFIQEAAKLAAKYNIGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDRRPRLY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ Y K   EM+ +FSD+P A+ENT +IA+RC+  L++    LP +   +   I    +
Sbjct: 226  SPEQYFKTSDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTI----D 281

Query: 309  NELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE RL       +         + Y +R+D+E+ +I +M F GYFLIV D
Sbjct: 282  TYFEHLSKEGLEERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            P       AI  + + ++         +     + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLATAIEMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +     D
Sbjct: 522  KITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSND 581

Query: 598  ---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               +S +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  + +R +G E    +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L  AD+LR
Sbjct: 642  MDLIPDFIHRMHGGE-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TAW+K HYP EF+AA M+ EM N + +     D R   ++++PPSVN     F   D++
Sbjct: 761  HTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYHFHASDDK 820

Query: 835  IY-YSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               Y L AIKGVG    + +++      P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR +   ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVLDVANFP---- 994

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
            +R+  V   +     E + 
Sbjct: 995  NRVVIV-LDDGTARIEVSC 1012


>gi|256827611|ref|YP_003151570.1| DNA-directed DNA polymerase III PolC [Cryptobacterium curtum DSM
            15641]
 gi|256583754|gb|ACU94888.1| DNA-directed DNA polymerase III PolC [Cryptobacterium curtum DSM
            15641]
          Length = 1165

 Score =  984 bits (2544), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1052 (33%), Positives = 546/1052 (51%), Gaps = 42/1052 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA----CAA 65
            +FVHL  H+ YSLL+GA  + +++ + A    PA+AITD   +    E            
Sbjct: 2    AFVHLHNHTEYSLLDGATHVKDMVQRAADLGMPAVAITDHGVMSGVPELEDACISVEKET 61

Query: 66   GIQ--PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            GI+  PI GC++     D LK   +     P +  ++LL  T EGY  L++LVS  ++ D
Sbjct: 62   GIKVKPIFGCEIYFTTDDELKREGK-----PRLYHMILLAKTNEGYHNLVKLVSESHV-D 115

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRL 182
                  R   + L+   ++GLI  +   +G I R       + A         LF     
Sbjct: 116  NFYYKPRTTFAMLKRY-SKGLIGTSACIAGIIPRLLDLGQYEDAMSWARKLAGLFEPGDF 174

Query: 183  YVNLQRHR------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            Y+ LQ                 Q+ Q+A    L  +ATN+  +L+ +D +A D+++ +  
Sbjct: 175  YLELQDQGVVTDLGHTQHELNVQLSQIAKECGLKTIATNDFHYLTHDDAKAQDIILCIGT 234

Query: 237  STVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
             + V   +R R + D  Y+K   EM +  +D PEA +NTVEIA +C+ +L+    ILPRF
Sbjct: 235  GSQVDDTNRMRFSNDQFYMKTEEEMRAALADFPEACDNTVEIAEKCNVVLE-RDSILPRF 293

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH----AQDYRQRLDFELNVIARM 351
               E +     E +  R +  +GL  R  +G +           +  +R + E  VI + 
Sbjct: 294  PVPEGE----TEVSWFRKQCESGLVRRYGEGKVQTFQELAQVRPEVAERYEHEAQVIIKQ 349

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFLIV ++I WAK + I VGPGRGS AGS+  YA+ ITD+DPL + LLFERFL+ +
Sbjct: 350  GFPAYFLIVQEYIMWAKDHGIGVGPGRGSAAGSIVTYAMGITDLDPLPYGLLFERFLSEE 409

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+ MPD D+DF    R +VI +V+  YG + ++ +ITFG LQAK A+RD  R L  PY  
Sbjct: 410  RVEMPDIDVDFDDQHRQDVIDHVREFYGEDHISGVITFGKLQAKNAVRDAARVLGYPYGV 469

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             DRLCKLI N+    +  QA+  +   + A  ++     +++ +Q +EG  R    HA  
Sbjct: 470  GDRLCKLIGNELGITIQ-QALETNPDLKAAYESEADAQAVIDAAQSIEGHVRGEGVHACA 528

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             +I   PL+  VP+ RD +    +TQ++  +  + GL+K DFLGL+TL ++ ++ D +  
Sbjct: 529  TIICRDPLADHVPVKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLGVISRACDNVKA 588

Query: 592  RG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            R  + +D S I  +D E + L+      G+FQ+E +        M+P    DI+A ++L 
Sbjct: 589  RHGIDIDPSAISLEDPEAFKLMCGGNMDGLFQVEGNLYVTLFARMKPRRFSDIVASIALN 648

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+ N  V  Y +R +GK ++V     + P+L+ET G I+YQEQ+MQI+  +SG+S  
Sbjct: 649  RPGPLQNGFVDDYVDRVSGKSQVVYYDDRLRPILEETYGTIVYQEQLMQISMRMSGFSAG 708

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            +AD LR+AMGKK  E M   +E +  GA  NG S  ++  I+    KFA Y FNKSH+A 
Sbjct: 709  KADKLRKAMGKKKLEVMKALEEDWNQGAVDNGYSLEVSKKIWSDAEKFAQYAFNKSHSAC 768

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YAV+  +TA++K HYP EF+AA ++  + N +K+  +        IQ++PP +N+  V+F
Sbjct: 769  YAVLVMRTAYLKAHYPNEFMAAVLSSYLGNNDKLIHYIASCAASGIQVLPPDINSSNVEF 828

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               D  + + LA ++GVG      I+       P+ SL DF  R+DS+  NR+ LE+L+ 
Sbjct: 829  TPTDEGVRFGLAGVRGVGEKVVEEIIAERDTHGPYTSLHDFVHRLDSRCYNRKTLEALIK 888

Query: 888  AGALDCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIFAH----EKGTFSDKITLE 941
            AGA D  GY+R QL+  +D   + + A   +K+R     ++F      +   FS++    
Sbjct: 889  AGAFDSTGYTRKQLMYFIDETPLLESAAKRQKDRNCGQTSMFDLFGDSDDSGFSEETPAP 948

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAM 1000
                 +       E+ +L  Y S HPL  Y  +L K+      +         N     M
Sbjct: 949  DGVEWDKRTLLAFEKDILKIYVSDHPLRPYAGLLSKLSKFRLGDLADREHDIKNATFVGM 1008

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + S   K T+KG+R+   T  +     EA  F
Sbjct: 1009 ISSVVTKLTKKGTRMATFTLEDTTGHVEAVCF 1040


>gi|169633232|ref|YP_001706968.1| DNA polymerase III, alpha chain [Acinetobacter baumannii SDF]
 gi|169152024|emb|CAP00899.1| DNA polymerase III, alpha chain [Acinetobacter baumannii]
          Length = 1187

 Score =  984 bits (2543), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1039 (36%), Positives = 582/1039 (56%), Gaps = 47/1039 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + +++     D+ PA+A+TD +NL +A++F       GI+PI
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  +                         LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   LGSTI---------------RLNDAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + +I+L G  S  + +    ++ Q AE  L  + + FG+R+Y+ L R  
Sbjct: 108  VQKEWVLEQH-QDIIVLLGQHS-DVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTD 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     +  +LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   RPR  
Sbjct: 166  RPGEEDFIQEAAKLAAKYNIGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDRRPRLY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ Y K   EM+ +FSD+P A+ENT +IA+RC+  L++    LP +   +   I    +
Sbjct: 226  SPEQYFKTSDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTI----D 281

Query: 309  NELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GL+ RL       +         + Y +R+D+E+ +I +M F GYFLIV D
Sbjct: 282  TYFEHLSKEGLKERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            P       AI  + + ++         +     + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLATAIEMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +     D
Sbjct: 522  KITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNSDSND 581

Query: 598  ---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               +S +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  + +R +G E    +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L  AD+LR
Sbjct: 642  MDLIPDFIHRMHGGE-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TAW+K HYP EF+AA M+ EM N + +     D R   ++++PPSVN     F   D++
Sbjct: 761  HTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYHFHASDDK 820

Query: 835  IY-YSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               Y L AIKGVG    + +++      P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR +   ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVLDVANFP---- 994

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
            +R+  V   +     E + 
Sbjct: 995  NRVVIV-LDDGTARIEVSC 1012


>gi|228941783|ref|ZP_04104330.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            berliner ATCC 10792]
 gi|228974708|ref|ZP_04135274.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            thuringiensis str. T01001]
 gi|228981302|ref|ZP_04141602.1| DNA polymerase III subunit alpha [Bacillus thuringiensis Bt407]
 gi|228778502|gb|EEM26769.1| DNA polymerase III subunit alpha [Bacillus thuringiensis Bt407]
 gi|228785111|gb|EEM33124.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            thuringiensis str. T01001]
 gi|228817995|gb|EEM64073.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            berliner ATCC 10792]
 gi|326942388|gb|AEA18284.1| DNA polymerase III DnaE [Bacillus thuringiensis serovar chinensis
            CT-43]
          Length = 1108

 Score =  984 bits (2543), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1026 (36%), Positives = 591/1026 (57%), Gaps = 47/1026 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  +              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMF-GHFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTMKIAERCQVEIPFHVNQLPKFPVSSNE----TSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL  R        G   + + +RL+ ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRKRY-------GAPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A +   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRLPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
               Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF +   E 
Sbjct: 920  TAQYVKLAKELEIPSLAQAMRYKKKVQ-RAIVYITSVRVIRTKKFQKMAFITFCDQNDEM 978

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 979  EAVLFP 984


>gi|88856521|ref|ZP_01131178.1| DNA polymerase III subunit alpha [marine actinobacterium PHSC20C1]
 gi|88814175|gb|EAR24040.1| DNA polymerase III subunit alpha [marine actinobacterium PHSC20C1]
          Length = 1174

 Score =  984 bits (2543), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1062 (34%), Positives = 563/1062 (53%), Gaps = 49/1062 (4%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            + + SFVHL VHS YS+L+GA  +  +LD       PAIAITD  N+F A +F + A A 
Sbjct: 5    DNNDSFVHLHVHSEYSMLDGAARVGPLLDAAVEQGMPAIAITDHGNMFGAYDFWKSATAR 64

Query: 66   GIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            GI+PIIG +  I                   T            + LL    EG   L  
Sbjct: 65   GIKPIIGTEAYITPGTARGDKTRVRWGGSHQTRDDVGGSGAYTHMTLLSQNNEGMHNLFR 124

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            + S+  +        R+    L +  ++G+I  TG   G +           A +    F
Sbjct: 125  MSSKASIEG-FYFKPRMDRELLSQY-SKGIIATTGCVGGEVQTKLRLGLYDEARQAAADF 182

Query: 175  KKLF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  +  +  +  H    +R     +++LA   ++PL+ATN+  +    D  AH  L+
Sbjct: 183  QDIFGKENFFAEIMDHGIDIERRTILDLIKLAKELDMPLLATNDLHYTHSHDATAHAALL 242

Query: 233  AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
             V  ++ +   +R +  + + YLK+ +EM S+F + PEA +NT+ IA RC    +    +
Sbjct: 243  CVQSASTLDDPNRFKFDSNEFYLKSAAEMRSLFREHPEACDNTLLIAERCEVSFE-GRDL 301

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +PRF   E +     E      +   G+  R           +  +  +  +E++VI +M
Sbjct: 302  MPRFPVPEGE----TEATWFEKEVAKGMNKRF------NNAPSDAHLAQAKYEVDVIQQM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI+WAK   I VGPGRGS AGS+ +YA+ IT++DPL   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIEWAKAQGIRVGPGRGSAAGSMASYAVGITELDPLAHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD D+DF   RR EVIRYV  KYG +RVAQI+T+G+++AK AL+D  R L MPYS 
Sbjct: 412  RVSMPDVDVDFDDRRRGEVIRYVTEKYGDDRVAQIVTYGTIKAKQALKDSARVLGMPYSV 471

Query: 472  VDRLCKLIPN-DPAHPVSLQAI--ADDSRFREA------RLADPSVDRLLEISQKLEGLY 522
             ++L K +P       +SL  +   D  R++EA         D    ++ + +  LEGL 
Sbjct: 472  GEKLTKAMPPAIMGKDISLHDVRNKDAPRYKEAADIRGIVDTDAEAAKVFDTAVGLEGLK 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+V+   PL  ++P+ R       +TQF+   +E  GLIK DFLGL+ LT++
Sbjct: 532  RQWGVHAAGVVLSAEPLLDVLPIMRREDDGAIITQFDQPPLESLGLIKMDFLGLRNLTVI 591

Query: 583  QKSLDFLA-QRGVKVDLSLIPFD-DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            + +L  +    G  + +  +  D D +TY LL    TLG+FQL+   MR  L+ ++P   
Sbjct: 592  EDALTMIKANTGSPLVIEDLDLDADQKTYDLLARGDTLGVFQLDGGPMRALLKQLKPTNF 651

Query: 641  EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQ 694
            EDI A+++LYRPGP+       Y  RKNG E I +IHP ++     +L  T G+I+YQEQ
Sbjct: 652  EDISAVIALYRPGPMGMNSHTKYALRKNGLEDIDAIHPELEEPLKEILGTTFGLIVYQEQ 711

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VM +AQ ++G++L +ADVLRRAMGKK KEE+DKQ   F SG  +NG SK     ++E L 
Sbjct: 712  VMSVAQKVAGFTLGQADVLRRAMGKKKKEELDKQFIGFESGMLENGFSKEAVKVLWETLM 771

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FADY FNK+H+A Y V+SY TA++K +YP E++AA +T   D+ +K+  +  + R+  I
Sbjct: 772  PFADYAFNKAHSAGYGVLSYWTAYLKANYPAEYMAALLTSVGDSKDKLGMYLSECRRMGI 831

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
            +++ P VN   V+F      I + L A++ VG +    I+ A      F+S  D+  +V 
Sbjct: 832  KVLAPDVNESTVNFTAVSGDIRFGLGAVRNVGASVVEQIVRARTEKGRFESFHDYLRKVS 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             +  N+R +ESL+ +GA D  G +R  LL+  ++    A  +++N  N   ++F      
Sbjct: 892  IQVANKRTVESLIKSGAFDSLGATRRGLLEIHEDACDSAVSLKRNEANGQVDLFGGIFDF 951

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---TI 990
              D   + +    +   +   E+ +LG Y S HPL   +  L K       E ++     
Sbjct: 952  DGDDDGVPERPEWSKRDKLAFEREMLGLYVSDHPLSGLELQLAKHQDATITEVLSGDVVA 1011

Query: 991  RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANF 1031
             G+++ +A +V S Q +  R  G++ G VT  +   E    F
Sbjct: 1012 DGDHVSIAGLVTSVQHRVARNSGNQYGIVTVEDFGGEISVMF 1053


>gi|196047476|ref|ZP_03114687.1| DNA polymerase III, alpha subunit [Bacillus cereus 03BB108]
 gi|225866581|ref|YP_002751959.1| DNA polymerase III, alpha subunit [Bacillus cereus 03BB102]
 gi|196021691|gb|EDX60387.1| DNA polymerase III, alpha subunit [Bacillus cereus 03BB108]
 gi|225787407|gb|ACO27624.1| DNA polymerase III, alpha subunit [Bacillus cereus 03BB102]
          Length = 1107

 Score =  984 bits (2543), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1027 (36%), Positives = 585/1027 (56%), Gaps = 50/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEE------------KSYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 106

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +F    Y++LQ H 
Sbjct: 107  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMF-GNFYMSLQHHA 164

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + +        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 165  IQDELLLQEKLPAFINRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 224

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F     +      +
Sbjct: 225  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVPSNE----TND 280

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 281  MYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 334  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 394  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 453

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 454  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 511

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +
Sbjct: 512  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 572  TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 632  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 692  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 752  MTALLSSAIGNEDKIMQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 811

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 812  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 871

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 872  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 918

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 919  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 976

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 977  MEAVLFP 983


>gi|166154760|ref|YP_001654878.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 434/Bu]
 gi|166155635|ref|YP_001653890.1| DNA polymerase III subunit alpha [Chlamydia trachomatis
            L2b/UCH-1/proctitis]
 gi|301336034|ref|ZP_07224278.1| DNA polymerase III subunit alpha [Chlamydia trachomatis L2tet1]
 gi|165930748|emb|CAP04245.1| DNA polymerase III alpha subunit [Chlamydia trachomatis 434/Bu]
 gi|165931623|emb|CAP07199.1| DNA polymerase III alpha subunit [Chlamydia trachomatis
            L2b/UCH-1/proctitis]
          Length = 1237

 Score =  984 bits (2543), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1076 (34%), Positives = 576/1076 (53%), Gaps = 60/1076 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+   + K    Q PA+A+TD  NLF A+EF +      I+P
Sbjct: 2    TWIPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +          + K+       ++LL    EGY+ L  L S  Y         
Sbjct: 62   IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYTEG-FYYVP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q H
Sbjct: 119  RIDRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLH 176

Query: 190  RGYDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +  +                            V+  +    +P VATN+  +L+ +D+ A
Sbjct: 177  KSSEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLA 236

Query: 228  HDVLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H+VL+          A  ++ + + K +   + + Y K+  EM  +F+  PE + NT  +
Sbjct: 237  HEVLLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEMAELFAAHPETITNTCIV 296

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---G 326
            A RC   L       P ++ +         E E        L      GL  +      G
Sbjct: 297  AERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLG 356

Query: 327  AIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
             IAK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSGA
Sbjct: 357  HIAKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGA 416

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + 
Sbjct: 417  GSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDN 476

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            VAQIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S  A+  D   ++  
Sbjct: 477  VAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELKQLY 534

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
            + D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK 
Sbjct: 535  VDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKP 594

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            +E  G++K DFLGLKTLT +  +   +  + G+ +  + IP DD  T+ LL    T+GIF
Sbjct: 595  VESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIF 654

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            Q+ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P+
Sbjct: 655  QMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPI 714

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NGI
Sbjct: 715  LKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGI 774

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
              +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK
Sbjct: 775  DPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEK 834

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK 860
            + K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    + 
Sbjct: 835  VGKLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKNG 894

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            P+ SL+DF  R D KK+ ++ LE+LV AG  DCF  ++   L  L+++       +K   
Sbjct: 895  PYKSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEAA 954

Query: 921  NKHENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                  F+ +          ++ E     +     + E+ +LG Y + HP+D  + +L  
Sbjct: 955  TGVLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPF 1014

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032
            + +    +      G  IR   ++     K  + +  +   +  S+    YE   +
Sbjct: 1015 LSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070


>gi|281358509|ref|ZP_06244989.1| DNA polymerase III, alpha subunit [Victivallis vadensis ATCC BAA-548]
 gi|281314991|gb|EFA99024.1| DNA polymerase III, alpha subunit [Victivallis vadensis ATCC BAA-548]
          Length = 1187

 Score =  984 bits (2543), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1035 (35%), Positives = 578/1035 (55%), Gaps = 19/1035 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YS+L+GA ++  +L      +  A+AITD   +    EF Q    AGI P
Sbjct: 4    DFVHLHLHTHYSMLDGACTVKGLLQLAQEHEMNAMAITDHGYMGGVEEFHQVLSGAGINP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +   D ++  +  K        ++LL    +GY  L +++S     D      
Sbjct: 64   IIGVEAYVAPGD-MRDFDSNKPFNRGGFHLILLCENEDGYSSLCKMMSAAN-KDGFHYKP 121

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI    +++   +GLI  +    G I + +     + AE+ L  +  +F  D  ++ L  
Sbjct: 122  RIDKELMRQYH-KGLICTSACIGGEISQYYLQGDVKRAEQALGEYLDIFGRDNFFIELMD 180

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +  +    +V+LA  ++L L+ATN+  ++ +ED EAH++++ +     +++K    
Sbjct: 181  HGMEEERKCNKFLVELAKKNDLRLIATNDVHYMRKEDAEAHEIMLCIQTGARLAEKHFRF 240

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              P+ Y K+ +EM  +F +LPE++ NT  IA RCS       P +  + +    D +  +
Sbjct: 241  PAPEFYFKSEAEMKELFRELPESITNTRLIAERCSMKFHYV-PEVNHYPKFYMPDGRLAD 299

Query: 308  ENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             N+LR      +E R     +         +   +R+++EL VI +  F  YF +V+DFI
Sbjct: 300  RNDLREVCYDNMEYRYGFDPRKTPELDDRQKKILERMEYELGVIEKTGFISYFFVVSDFI 359

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            + AK  +IPVGPGRGSGAGS+ AY   ITDIDPLRF+L FERFLNP+R+S PDFD+DFC+
Sbjct: 360  RHAKGQDIPVGPGRGSGAGSLVAYLTRITDIDPLRFNLFFERFLNPERVSPPDFDVDFCE 419

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR EVI YV+ +YG + VAQI T+G L+AKA ++DV R L   +   +RL K+IP DP 
Sbjct: 420  RRRGEVIDYVRGRYGFDSVAQICTYGQLKAKAVVKDVARVLGCDFEFGNRLSKMIPEDPK 479

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  +    E    DP + ++ + ++ LEGL R    HAAG++IGD+ L  LVP
Sbjct: 480  MTLD-KAVEQNKELAEKIETDPMIAKVWKFAKVLEGLNRQTGIHAAGVIIGDQRLDNLVP 538

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            + R   SD  V  F     E+ GL+K DFLGLKTLT+++ +LD + +   + +D   IP 
Sbjct: 539  LARSA-SDSMVVPFPAHPCEEQGLLKMDFLGLKTLTIIKDALDMIKKDYGIVIDTMKIPL 597

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +T+ +L    T+ +FQLES GM+        + +E IIAL+++YRPGP+  I  +  
Sbjct: 598  DDPKTFEMLQRGDTVAVFQLESGGMQNLCRSFGVETLEHIIALLAIYRPGPMQFIPDFIR 657

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK G+EKI+  HPL++  LKET G+++YQEQ+MQ+ Q+L+G++L  AD+LRRA+GKK  +
Sbjct: 658  RKKGEEKIIYDHPLMEDCLKETYGIMLYQEQIMQVVQVLAGFTLGGADILRRAIGKKKVD 717

Query: 724  EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             + KQKE+F  G  + N I + +A  I+E +  FA YGFNKSH+AAY  + YQTA++K +
Sbjct: 718  VLAKQKEKFFKGCKETNNIDEKLADQIWEKIKLFAGYGFNKSHSAAYGFVCYQTAYLKAN 777

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YPV+F+AA +  E+++ E+I       ++  I ++PP VN+  + F   +  I + L AI
Sbjct: 778  YPVQFMAAILNGEIESAERIAFMINTCKEMGINVLPPDVNSSDIRFSTDNGNIRFGLGAI 837

Query: 843  KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGVG   A  I+E+   D  F++  DFC R  S   N R+LE L  AGALD  G  R Q+
Sbjct: 838  KGVGEVAASQIIESRQKDGKFETFLDFCERCGSNV-NSRMLEHLTRAGALDGLGLRRSQI 896

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---ITLEKFSVENSSVRFENEQRV 958
            L   + +  +A    ++R     ++F    G  +D    + +      +     ++E+ +
Sbjct: 897  LAIAEPMMAFAAGRARDRAAGQGSLFDLLDGGDADDACSVPIPDIPEFDKEDILKSEKEL 956

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGW 1017
            LGFY +GHPLD Y  ++R                  IR+A MV +  QK ++  G + G 
Sbjct: 957  LGFYVTGHPLDPYAELVRTYSTVPIRSLEELNDNAQIRIAGMVNTFTQKLSKNSGKQFGI 1016

Query: 1018 VTFSEPAKEYEANFF 1032
            +   +     E   +
Sbjct: 1017 LLLEDLDASCECMIY 1031


>gi|169796248|ref|YP_001714041.1| DNA polymerase III, alpha chain [Acinetobacter baumannii AYE]
 gi|184157823|ref|YP_001846162.1| DNA polymerase III subunit alpha [Acinetobacter baumannii ACICU]
 gi|213157018|ref|YP_002319063.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB0057]
 gi|215483703|ref|YP_002325924.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB307-0294]
 gi|294838019|ref|ZP_06782702.1| DNA polymerase III DnaE [Acinetobacter sp. 6013113]
 gi|294843569|ref|ZP_06788252.1| DNA polymerase III DnaE [Acinetobacter sp. 6014059]
 gi|294859019|ref|ZP_06796788.1| DNA polymerase III DnaE [Acinetobacter sp. 6013150]
 gi|301347827|ref|ZP_07228568.1| DNA polymerase III DnaE [Acinetobacter baumannii AB056]
 gi|301511111|ref|ZP_07236348.1| DNA polymerase III DnaE [Acinetobacter baumannii AB058]
 gi|301595112|ref|ZP_07240120.1| DNA polymerase III DnaE [Acinetobacter baumannii AB059]
 gi|169149175|emb|CAM87054.1| DNA polymerase III, alpha chain [Acinetobacter baumannii AYE]
 gi|183209417|gb|ACC56815.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii ACICU]
 gi|213056178|gb|ACJ41080.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB0057]
 gi|213988216|gb|ACJ58515.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB307-0294]
 gi|322508138|gb|ADX03592.1| DNA polymerase III, alpha chain [Acinetobacter baumannii 1656-2]
 gi|323517712|gb|ADX92093.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii
            TCDC-AB0715]
          Length = 1187

 Score =  984 bits (2543), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1039 (36%), Positives = 582/1039 (56%), Gaps = 47/1039 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + +++     D+ PA+A+TD +NL +A++F       GI+PI
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  +                         LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   LGSTI---------------RLNDAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + +I+L G  S  + +    ++ Q AE  L  + + FG+R+Y+ L R  
Sbjct: 108  VQKEWVLEQH-QDIIVLLGQHS-DVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTD 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     +  +LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   RPR  
Sbjct: 166  RPGEEDFIQEAAKLAAKYNVGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDRRPRLY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ Y K   EM+ +FSD+P A+ENT +IA+RC+  L++    LP +   +   I    +
Sbjct: 226  SPEQYFKTSDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTI----D 281

Query: 309  NELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE RL       +         + Y +R+D+E+ +I +M F GYFLIV D
Sbjct: 282  TYFEHLSKEGLEERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            P       AI  + + ++         +     + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLATAIEMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +     D
Sbjct: 522  KITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSND 581

Query: 598  ---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               +S +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  + +R +G E    +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L  AD+LR
Sbjct: 642  MDLIPDFIHRMHGGE-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TAW+K HYP EF+AA M+ EM N + +     D R   ++++PPSVN     F   D++
Sbjct: 761  HTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYHFHASDDK 820

Query: 835  IY-YSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               Y L AIKGVG    + +++      P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR +   ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVLDVANFP---- 994

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
            +R+  V   +     E + 
Sbjct: 995  NRVVIV-LDDGTARIEVSC 1012


>gi|256396217|ref|YP_003117781.1| DNA polymerase III subunit alpha [Catenulispora acidiphila DSM 44928]
 gi|256362443|gb|ACU75940.1| DNA polymerase III, alpha subunit [Catenulispora acidiphila DSM
            44928]
          Length = 1189

 Score =  984 bits (2543), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1067 (33%), Positives = 553/1067 (51%), Gaps = 50/1067 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL VH+ YS+L+GA  L ++    ++   PA+A+TD  N+  A +F+++A AAGI
Sbjct: 2    SDSFVHLHVHTEYSMLDGAARLKDMFKHASSLGMPAVAMTDHGNMHGAADFTKQAMAAGI 61

Query: 68   QPIIGCQLDIDMQDN--LKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PI+G +  +  +     K    G+        +         +      G Q L +L S
Sbjct: 62   KPILGIEAYVAPESRYNAKPVRWGQPHQKSDDVSGGGLYGHATIWAQNVTGLQNLTKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            R +     ++  R+    + E  + GL+  TG  SG +           A      ++++
Sbjct: 122  RAFTEGFARKYPRMDAELMAE-HSAGLMATTGCPSGFVQTRLRLGHFDEALAAAGQYQEI 180

Query: 178  F-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  +  Y+ L  H    +      ++ +     +P V TN+S +   E+  AHD L+ + 
Sbjct: 181  FGKENFYLELMDHGLDIETRVREGLLDIGRKLNIPPVVTNDSHYTYREESAAHDALLCIQ 240

Query: 236  HSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQV-HAPI 291
             ++ ++  DR R   D +YLK+  EM +I +D    E   NT+ IA + +      +  +
Sbjct: 241  TASNIADPDRFRFGGDGYYLKSADEMRAINTDDIWQEGCRNTLAIAEKVNPEGMFAYRNL 300

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +PR    +       E+   R  A  GL  R   G   +      Y  RL+FEL+VI  M
Sbjct: 301  MPRLEAPDG----LTEDQWFRKLAYDGLNKRFPAGVPDEKV----YHARLEFELDVILSM 352

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YF++VADFI WAK N I VGPGRGS AGS+ A++L ITD+DP+ F LLFERFLNPD
Sbjct: 353  GFPSYFIVVADFINWAKDNGIAVGPGRGSAAGSLVAWSLGITDVDPIPFDLLFERFLNPD 412

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R++ PD DIDF   RR +VIRYV  KYG ++VA I TFG ++AKAA++D  R L  P++ 
Sbjct: 413  RVTPPDIDIDFDDRRRSDVIRYVTEKYGEDKVAMIATFGRIKAKAAIKDSSRILGYPFAM 472

Query: 472  VDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K +P D     + L  + D +          R     D  V ++++  + +EGL 
Sbjct: 473  GDRITKAMPPDVMGKSMPLSGVFDSNHPRYGEAGEIRGMYEQDADVKKVIDTGRGVEGLI 532

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG++I    ++  VP+       + +TQF+    E+ GLIK DFLGL+ LT++
Sbjct: 533  RQPGVHAAGVIISPETITDHVPVMMRPADGVIITQFDYPTCEEIGLIKMDFLGLRNLTII 592

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              +L+ +      +++    P DD  TY LL    TLG+FQL+   +R  L  M+PD  E
Sbjct: 593  TDALNNVETTTGKRLNTLEFPLDDPLTYELLCKGDTLGVFQLDGGPLRSLLRQMRPDNFE 652

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLID----PMLKETQGVIIYQEQV 695
            D+ A+++LYRPGP+  ++ + Y  RKN ++ I  IHP ++     +L  + G+IIYQEQV
Sbjct: 653  DVSAIIALYRPGPMGANSHINYAERKNNRQPITPIHPELEAPLKEVLGVSYGLIIYQEQV 712

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M  A++L+GYSL++AD+LRRAMGKK KE +DK+   F  G + NG S      ++++L  
Sbjct: 713  MAAARVLAGYSLAQADLLRRAMGKKKKEVLDKEYVGFEKGMADNGYSAQATKAVWDVLVP 772

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FADY FNKSH+ AY  I+YQTA++K HYP E++AA +T    + ++   +  + R+  I+
Sbjct: 773  FADYAFNKSHSVAYGFIAYQTAYLKAHYPAEYMAALLTSTATDKDRSAIYLGECRRMGIK 832

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874
            ++PP VN     F      I + L AI+ VG      I+    A   F S  DF ++VD 
Sbjct: 833  VLPPDVNDSLHQFTPVGTDIRFGLGAIRNVGENVVTSIIATRKAKGRFTSFNDFLAKVDL 892

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
               N+R +ESL+ AGA D  G+SR  L++  +        V+K      +++F       
Sbjct: 893  PVCNKRTIESLIKAGAFDSLGHSRRGLIEQHERAIDSVVDVKKQEALGQDSLFGSLMDGG 952

Query: 935  SDKIT---LEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-- 987
             + IT      FS    +  V    E+ +LG Y S HPL   + +L              
Sbjct: 953  QEAITGGIELAFSDIEWDKKVLLGFEREMLGLYVSDHPLSGVENLLASKADCSIASLTGE 1012

Query: 988  -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G+ + +A +V    +K T++G+     +  +     E  FFP
Sbjct: 1013 NDRADGSIVTIAGLVAGLARKVTKQGNTWAAASVEDLEGGIETMFFP 1059


>gi|152976985|ref|YP_001376502.1| DNA polymerase III DnaE [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025737|gb|ABS23507.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 1109

 Score =  983 bits (2542), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1026 (35%), Positives = 581/1026 (56%), Gaps = 46/1026 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + YSLL+ A  ++ ++ +       A+AITD N ++  + F +     GI+PI
Sbjct: 3    FVHLQCQTVYSLLKSACKIDELVARAKELGFSALAITDENVMYGVIPFYKACKKMGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    +  ++  +              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASVFNEEEER-----------AYPLVLLAENEVGYQNLLKISSTIMT----KSKDG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GL  ++ G  G I++       + AE+   T++ +F    Y+++Q H 
Sbjct: 108  IPKKWLVHYA-KGLTAISPGKDGEIEQLLLQGKDERAEEVARTYQNMF-GHFYMSVQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + + +      +P+VATN+  ++++ D    + L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKIEEFVRNMNIPIVATNDVRYINQNDALVQECLLSVQSGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+ +EM ++FS + EAL NT+ IA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSAEMEALFSHVEEALRNTIHIAERCHVEIPFHVNQLPKFPVPTNE----TSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL  R        G   + +  RL  EL VI+RM FS YFLIV DF+++A 
Sbjct: 282  AYLRRMCEEGLYKRY-------GTPKEVHVNRLYHELEVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N I  GPGRGS AGS+ AY L ITDIDP+ ++LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENRILTGPGRGSAAGSLVAYVLEITDIDPIAYNLLFERFLNPERVTLPDIDIDFPDVRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDLFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A  +    R+    +   +R+ EI++++EGL RH S HAAG+++   PL++ + +  +
Sbjct: 455  -EAYEESEALRDFIQGNLLYERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTKSIAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  L F+      ++D+  +   D +
Sbjct: 513  GHNDVYVTQYPADVLEELGLLKMDFLGLRNLTLLENILTFITTTTGKQIDIRNVSLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+ + SLYRPGP++ I V+   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVVVNSLYRPGPMEQIPVFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +  I  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +++
Sbjct: 633  RRNIQYLHPDLKPILESTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKSRDILEE 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP++F
Sbjct: 693  ERKHFVQGCLQNGYDQTSAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYPLQF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS++     F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKITQYIRETKRKGFCVLPPSLHRSGYHFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E     PF  L +FC R+  K +  R LE+ V++G  D F  SR  L  S+  
Sbjct: 813  ATVTALIEEREKAPFQDLFEFCLRMPVKFVTERNLEAFVWSGCFDDFQVSRTTLFNSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA    +            E    S  +  ++ S      +   E+  LGFY S +P
Sbjct: 873  ALEYASLARE---------LGEESVPKSVYVQGKELSF---IEQLNKEKETLGFYLSSYP 920

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
               Y  +++++ I    +++   +G   R    +   +  +T+K  ++ +VTF +   E 
Sbjct: 921  TAQYASLVKELEIPSLAQAMRQ-KGKVQRAIVYITRVKIIRTKKMQKMAFVTFCDQNDEM 979

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 980  EAVVFP 985


>gi|21220545|ref|NP_626324.1| DNA polymerase III subunit alpha [Streptomyces coelicolor A3(2)]
 gi|256788317|ref|ZP_05526748.1| DNA polymerase III subunit alpha [Streptomyces lividans TK24]
 gi|289772211|ref|ZP_06531589.1| DNA-directed DNA polymerase subunit III alpha [Streptomyces lividans
            TK24]
 gi|14194704|sp|Q9Z618|DPO3A_STRCO RecName: Full=DNA polymerase III subunit alpha
 gi|4324655|gb|AAD16978.1| DNA polymerase III alpha subunit [Streptomyces coelicolor A3(2)]
 gi|5596809|emb|CAB51456.1| DNA polymerase III alpha chain [Streptomyces coelicolor A3(2)]
 gi|289702410|gb|EFD69839.1| DNA-directed DNA polymerase subunit III alpha [Streptomyces lividans
            TK24]
          Length = 1179

 Score =  983 bits (2542), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/1070 (32%), Positives = 544/1070 (50%), Gaps = 53/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ D         IA++D  NL  A +F   A  
Sbjct: 1    MSKPP-FTHLHVHTQYSLLDGAARLKDMFDACNEMGMSHIAMSDHGNLHGAYDFFHSAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  + ++G   L  
Sbjct: 60   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWATNSKGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EG++  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SEGIVASTGCPSGEVQTRLRLGHFDEALKAAADY 178

Query: 175  KKLF-GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +F  DR ++ L  H    +      ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIEIEHRVRDGLLEIGRKLGIPPLVTNDSHYTYAHEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHA 289
             +     +S  DR R     +YLK+  EM +I S     E   NT  IA           
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCANTRLIAEMIDTTGMFEK 298

Query: 290  -PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              ++P+F   E       E    + +   G+E R   G        +D +++ ++E++VI
Sbjct: 299  RDLMPKFDIPEGF----TEITWFQEEVRRGMERRFPGGV------PEDRQKQAEYEMDVI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VADFI WAK   I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFL
Sbjct: 349  IQMGFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  P
Sbjct: 409  NPERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYP 468

Query: 469  YSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y+  DRL K +P D     + L  I D +          R    ++P V ++++ ++ +E
Sbjct: 469  YAMGDRLTKAMPADVLGKGIDLNGITDPTHPRYSEAGEIRSMYESEPDVKKVIDTAKGVE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ L
Sbjct: 529  GLVRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   +G+ +DL  +P DD  T+ LL    TLG+FQ +   MR  L  M+PD
Sbjct: 589  TIMDDAVKMVKSNKGIDLDLLSLPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMKPD 648

Query: 639  CIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLID----PMLKETQGVIIYQ 692
              EDI A+ +LYRPGP  +D+   Y  RKNG ++I  IH  ++     +L  T G+I+YQ
Sbjct: 649  NFEDISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHKELEEPLQEVLAVTYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV + AQ+++GYSL EAD+LRR MGKK  +E+ K    F +GA KNG S      ++++
Sbjct: 709  EQVQKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFVLFQAGARKNGYSDEAIQALWDV 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H+AAY ++SY T ++K +YP E++AA +T   D+ +K   +  + R+ 
Sbjct: 769  LVPFAGYAFNKAHSAAYGLVSYWTGYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
             I+++PP+VN    +F   GD+ I + L+A++ VGT     I++   A   + S  D+  
Sbjct: 829  GIKVLPPNVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIKCRKAKGKYASFPDYLD 888

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +V++   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F   
Sbjct: 889  KVEAVVCNKRTTESLIKAGAFDEMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGM 948

Query: 931  KGTFSDKITLE-----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                SD+              + +     E+ +LG Y S HPL   + +L      G  +
Sbjct: 949  GDEQSDEPGFGLDVVFGEDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGISQ 1008

Query: 986  SVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1009 LTGGDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFP 1058


>gi|154491985|ref|ZP_02031611.1| hypothetical protein PARMER_01616 [Parabacteroides merdae ATCC 43184]
 gi|154088226|gb|EDN87271.1| hypothetical protein PARMER_01616 [Parabacteroides merdae ATCC 43184]
          Length = 1266

 Score =  983 bits (2542), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1147 (32%), Positives = 575/1147 (50%), Gaps = 134/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-------- 61
             F+HL VH+ YSLL+G  S++ ++DK   D  PAIA+TD   +F   EF  K        
Sbjct: 3    PFIHLHVHTQYSLLDGQASIDALIDKAQKDGMPAIAVTDHGVMFGIKEFFNKVSKKNGKP 62

Query: 62   -------------------------------------ACAAGIQPIIGCQLDIDMQDNLK 84
                                                       +PI GC+       N +
Sbjct: 63   LGAIKDYEKELKELKSKTELTAEEQARLEEIPAKIEEEKKKIFKPIFGCECYCAR--NGR 120

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
             +        +   +++L     GY+ LI++VS  +         RI    L++   E L
Sbjct: 121  HSKLASQNDRSGWHLIVLAKNLNGYKNLIKMVSLSWTEG-FYGRPRIDKELLEKYH-EDL 178

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-------- 196
            I+ +    G I +         AE+ +L FK LFG+  Y+ +QRH  +D           
Sbjct: 179  IICSACIGGEIPQHILNGRMDKAEESVLWFKNLFGEDYYLEIQRHETHDPNAAQDVYPHQ 238

Query: 197  ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++LA  H + ++ATN+  F++ ED EAHD L+ ++    +   +R R T   +
Sbjct: 239  VTANKAILELARKHNIKVIATNDVHFVNAEDAEAHDRLICLSTGKDLDDPNRMRYTKQEW 298

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K  +EM +IFSD+PEAL NT+EIA +  F    H PI+P F   E    ++E       
Sbjct: 299  MKTTAEMNTIFSDIPEALSNTLEIADKVEFYSIDHGPIMPTFAIPEDFGTEEEYRQKFTE 358

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L+     G ++     
Sbjct: 359  QDLFDEFTRDENGNVVLSEEAAHDKIKKLGGYEKLYRIKLEADYLKKITYDGAKICYGDD 418

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                     + ++RL+FEL+++  M F GYFLIV DFI+ A++   + VGPGRGS AGS 
Sbjct: 419  L------NDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSA 472

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D DF  D R EV+R+V  KYG ERVA 
Sbjct: 473  VAYCLGITRIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAH 532

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN---DPAHPVSLQAIADDSRFREAR 502
            IIT+G++  K+A++DV R  ++P ++ +RL KL+P+   D        AI      +EA 
Sbjct: 533  IITYGTMATKSAIKDVARVQKLPLAESNRLAKLVPDKIPDMKKFKLKDAINYVPELKEAA 592

Query: 503  L-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQ 557
               DP     L+ +Q LEG  R+   HA G++IG   +S +VP+     +D   ++ VTQ
Sbjct: 593  TGNDPLARDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQ 652

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKG 616
            +    IE+ GLIK DFLGLKTL++++++++ +        D+  I  +D  TY L     
Sbjct: 653  YEGSVIEETGLIKMDFLGLKTLSIIKEAIENIRLTTGHDLDIDHISLEDPATYKLYCDGK 712

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            T G FQ ES+GM++ L+ +QP   ED+IA+ +LYRPGP+D I  +  RK GKE+I    P
Sbjct: 713  TTGTFQFESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIP 772

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+ E+M+  K +F++G 
Sbjct: 773  VMERYLKDTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGG 832

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
              NG  +     I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA ++  +
Sbjct: 833  KTNGYKEETLQKIWSDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPSEYMAAVLSRSL 892

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIM- 854
             N+  I KF  + +   IQ++ P VN   + F V  N+   + L A+KGVG    ++I+ 
Sbjct: 893  SNIVDITKFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGEAAVQNIIE 952

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDN 907
            E   + P+  + DF  RV+    N++ +ESL  AGA D FG  R Q           L+ 
Sbjct: 953  ERRKNGPYKDIFDFVERVNLTACNKKNIESLALAGAFDNFGIQREQFFAETGKGEIFLET 1012

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + +++    ++F  +      K  + K    +   R   E+ ++G Y S HP
Sbjct: 1013 LVRYGNKFQTDKSTATNSLFGGDAFIAIAKPEIPKCERWSDLERLNKEKELVGIYLSAHP 1072

Query: 968  LDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y+ IL  +   G  E        G ++    +V   ++  T+KG+  G +   +   
Sbjct: 1073 LDEYRIILTYVCNTGMAEINDKENLVGKDLLFGGIVTDFREGMTKKGNPYGIIKIEDFTG 1132

Query: 1026 EYEANFF 1032
              E   F
Sbjct: 1133 SGEIALF 1139


>gi|52140905|ref|YP_085924.1| DNA polymerase III DnaE [Bacillus cereus E33L]
 gi|51974374|gb|AAU15924.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
          Length = 1108

 Score =  983 bits (2542), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1027 (36%), Positives = 585/1027 (56%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  +              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMF-GNFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + +        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPVFMSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS   EA+ NTVEIA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHAEEAIYNTVEIAERCRVEIPFHVNQLPKFPVPSNE----TND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|213963506|ref|ZP_03391759.1| putative DNA polymerase III, alpha subunit subfamily [Capnocytophaga
            sputigena Capno]
 gi|213953786|gb|EEB65115.1| putative DNA polymerase III, alpha subunit subfamily [Capnocytophaga
            sputigena Capno]
          Length = 1485

 Score =  983 bits (2542), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/1085 (32%), Positives = 564/1085 (51%), Gaps = 78/1085 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------- 61
            F HL  H+ +S+L+   S+ +++   A ++ PA+A+TD+ N+ +A  F Q          
Sbjct: 255  FAHLHNHTQHSILQSTTSIKDLVKVTAKEKMPAVALTDSGNMMAAFHFVQAVQGHNKEAE 314

Query: 62   -----ACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                 A   G       I+PIIGC      + N+   +  KT       +V+L    +GY
Sbjct: 315  AKNKEAEEKGETPTETLIKPIIGC------EFNICENHLDKTRQDNGYQVVILAKNKQGY 368

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L ++ S            RI  + + E     L++L+GG +G I        ++ AE+
Sbjct: 369  HNLTKMASIASTKG-FYYVPRIDKT-IVEQYKSDLMVLSGGMNGEIPSKILNIGTKQAEE 426

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             LL +K+ FG+  Y+ + RH   D  R ++ +V+ +  + + L+ATNN+ +L ++D  AH
Sbjct: 427  ALLWWKEQFGEDFYLEVMRHNQEDENRVNETLVEFSKKYGVKLIATNNTFYLHKKDANAH 486

Query: 229  DVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            D+L+ V                       ++Y K  +EM ++F D+PEA+ N  EI  + 
Sbjct: 487  DILLCVKDGEKQKTPIGRGRGYRFGMPNNEYYFKTSAEMKALFKDIPEAILNIQEIIDKV 546

Query: 282  SFILQVHAPILPRFIEKEC----DDI--QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
                     +LP+F   E     DD+  +K E N LR+    G + +  +          
Sbjct: 547  EPYGLARDILLPKFDIPEEFQVSDDLTGKKGENNYLRHLTYEGAKRKYPE-------ITD 599

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            + R+RLDFEL++I +  + GYFLIV DFI  A++  + VGPGRGS AGS  A+ L IT++
Sbjct: 600  EVRERLDFELSIIEKTGYPGYFLIVQDFIAAARRMGVSVGPGRGSAAGSAVAFCLDITNM 659

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DP+++ LLFERFLNPDR+SMPD DIDF    R +VI YV +KYG  +VA+IIT+G + AK
Sbjct: 660  DPIKYDLLFERFLNPDRVSMPDIDIDFEDSGRQDVINYVIDKYGESQVARIITYGKMAAK 719

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPA-----HPVSLQAIADDSRFREARLADPSVDR 510
            +A++D  R L +P  + +RL  L+PN  +          + + +  R  E    D     
Sbjct: 720  SAIKDTARVLDVPLQESNRLAGLVPNGVSSLGKMFGWDDKTLKEKVRSEELLKVDELKRL 779

Query: 511  L-----------LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
            L           ++ +  +EG  R+   HA G++I    ++  VP+     SDL VTQF+
Sbjct: 780  LAGEGEEESTQTIQQANIIEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDLFVTQFD 839

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTL 618
               +E AGL+K DFLGL TLTL++ +++ + Q   +++D    P DD +TY L     T+
Sbjct: 840  NSVVESAGLLKMDFLGLSTLTLIKDTIENIKQTHNIELDAEAFPLDDKKTYELFQRGETV 899

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            GIFQ ES+GM++ +  ++P    D+IA+ +LYRPGP++ I  +  RK+G E I    P +
Sbjct: 900  GIFQYESTGMQKYMRELKPTVFADLIAMNALYRPGPLEYIPSFIKRKHGIEPIEYDLPDM 959

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  LKET G+ +YQEQVM ++Q L+G++  EADVLR+AMGKK    + K K +FI+ AS+
Sbjct: 960  EEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQIAVLAKMKPKFITQASE 1019

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             G        I+    KFA Y FNKSH+  YA + YQTA++K +YP E++AA ++  M++
Sbjct: 1020 KGHDAQKLEKIWADWEKFAAYAFNKSHSTCYAWVGYQTAFLKANYPAEYMAAVLSNNMND 1079

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEAS 857
            ++ I  F ++  +  I+++PP VN     F V  N    + + A+KGVG      I+E  
Sbjct: 1080 IKTITFFLEECHRMGIKVLPPDVNESLYKFTVNKNGDIRFGMGAVKGVGKAAVDTIVEQR 1139

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQ 909
             ++P+ S+ D   RVD K +N++  ES+  AG  D F    R Q   +       L+   
Sbjct: 1140 QERPYTSIFDLAKRVDYKSINKKAFESIALAGGFDSFTNVHRAQYFHAEADGIPFLEKAI 1199

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++    ++++ +   ++F  E      +  + K     +  +   E+ V+G Y SGHPLD
Sbjct: 1200 RFGTKYQESKNSAQMSLFGGESEVDVPEPAVPKCETWGNLEQLRREKEVVGIYISGHPLD 1259

Query: 970  VYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             +K  L         +           + +A MV   Q + ++ G   G++T  +    Y
Sbjct: 1260 DFKHELHNFCNISLSQLQDLNSFINRELTVAGMVADLQHRTSKNGKGFGFLTLEDYDGSY 1319

Query: 1028 EANFF 1032
            E   F
Sbjct: 1320 EFKLF 1324


>gi|167750256|ref|ZP_02422383.1| hypothetical protein EUBSIR_01230 [Eubacterium siraeum DSM 15702]
 gi|167656818|gb|EDS00948.1| hypothetical protein EUBSIR_01230 [Eubacterium siraeum DSM 15702]
          Length = 1109

 Score =  983 bits (2541), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/999 (35%), Positives = 558/999 (55%), Gaps = 25/999 (2%)

Query: 39   DQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS 98
              Q A+A+TD   ++ +++F  +    GI+ IIGC++ +  +     + +          
Sbjct: 1    MGQTAVALTDHGVMYGSIDFYNECVENGIKAIIGCEVYVAPRTRFDKSTKS---DMKPHH 57

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +VLL    EGY+ L +LV+  Y         R+    L+   ++GLI L+   SG + R 
Sbjct: 58   LVLLCKDNEGYKNLSKLVTLGYTEG-FYNKPRVDRELLRRY-SKGLICLSACISGELART 115

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNS 217
                    A   +  ++++FG+  Y+ LQ H   ++ R    ++++A      LVATN++
Sbjct: 116  LLDGRLADAVTLVKEYREIFGEDYYIELQSHGISEQERILPYLLRVAKDTGTQLVATNDA 175

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSI-FSDLPEALENTV 275
             ++ +ED     VL  +A +T +  K+  +   D  YLK+  EM ++ F     A +NTV
Sbjct: 176  HYVEKEDSYVQRVLTCIATNTTLDDKNSMQFATDEFYLKSEDEMKALGFPQ--SAYDNTV 233

Query: 276  EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
            +IA +C+        ILP F  +  D+     E     +   GL  R            +
Sbjct: 234  KIAEKCNVSFTFGHTILPFFKAEGYDNN----EIYFNAQVRKGLVKRYGDPV------PK 283

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            +   R ++E++VI +M F  YFLIVADFI +AK+N I VGPGRGSGAGSV AY L ITDI
Sbjct: 284  EVLDRAEYEMSVIKKMGFIDYFLIVADFIGYAKRNGIAVGPGRGSGAGSVCAYCLGITDI 343

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DP+RF+LLFERFLNP+R++MPDFD+DFC  RR EVI YV  KYG + VAQIITFG++ A+
Sbjct: 344  DPIRFNLLFERFLNPERVTMPDFDVDFCYIRRQEVIDYVVRKYGRDHVAQIITFGTMAAR 403

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A+RD GRA+ +PY +VD + KLIP      +   A+  +    +   +D  V  L+E +
Sbjct: 404  GAIRDAGRAMGLPYGKVDTVAKLIPMSMHSTID-GALKSEKELVKLASSDSEVSLLIETA 462

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            +K+EG+ R+ S HAAGIVI   P++  VP+Y++   ++ +TQ+ M  IE+ GL+K DFLG
Sbjct: 463  KKIEGMARNTSIHAAGIVITRDPVADYVPLYQNSEGEV-MTQYTMTAIERLGLLKMDFLG 521

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            L+ LT++Q     + +     D+  IP +D ETY ++++ GTLG+FQ ES+GM   L  M
Sbjct: 522  LRYLTVIQDCCKLVVKSCPDFDIEKIPENDAETYDMMSSGGTLGVFQFESAGMTSLLSRM 581

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            +P  +ED+ A +SLYRPGP+D+I  Y   +   EKI   HPL+  +L  T G I+YQEQV
Sbjct: 582  KPRSVEDLTAALSLYRPGPMDSIPTYLANRRNPEKIRYKHPLLKGILDVTYGCIVYQEQV 641

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M I ++L+GYS   AD++RRAM KK  E M K++  F+ GA  N + + +A  IF+ +  
Sbjct: 642  MMICRVLAGYSYGRADIVRRAMAKKKPEVMVKERATFVEGAVANNVDRQVAEEIFDDMMS 701

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSHAAAY++++Y+TA+++ HY  E++ A +T  +    K  ++  D  Q  ++
Sbjct: 702  FASYAFNKSHAAAYSLLAYRTAYLRCHYYKEYMVALLTSVIGWGGKTAEYIGDLAQHGLK 761

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            ++PP VN     F   ++ I + L AIK VG      I+E     PF SL DFC R+  K
Sbjct: 762  LLPPHVNYSETGFSCENDGIRFGLLAIKNVGANMIADIIEERTKHPFKSLFDFCERMSDK 821

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
             +N+R LESL+  GA D  G +R +++ SL+ +       +++      ++   +     
Sbjct: 822  NINKRALESLIKCGAFDGLGNNRREMMISLELMLDT--LSQRHDLEGQMSLMGEDDAADE 879

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNN 994
                ++     + +     E+ +LG Y SGHP D +  I R+ G +       +     N
Sbjct: 880  GAFQIKPADEYSHAQLLSYEKEMLGIYISGHPADPFYRIARESGYENIGSILESNKDKQN 939

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +R+ A++ S +   T+ G  +G++   + + E E   FP
Sbjct: 940  VRVTALLTSVRNHITKSGKTMGFIVIEDASGEIECLVFP 978


>gi|262376213|ref|ZP_06069443.1| DNA polymerase subunit III [Acinetobacter lwoffii SH145]
 gi|262308814|gb|EEY89947.1| DNA polymerase subunit III [Acinetobacter lwoffii SH145]
          Length = 1190

 Score =  983 bits (2541), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1037 (37%), Positives = 588/1037 (56%), Gaps = 47/1037 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++     +Q PA+A+TD +NL +A++F  K  + GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRIPDLVKAAEEEQMPALALTDLSNLHAAVKFYGKCLSKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++                       + LL  T  G++ L ELVS  ++  Q      
Sbjct: 63   LGSEI---------------RLNDAEHRMTLLAMTNTGWRNLTELVSEGFISGQQLDIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   W+     E +I L G  S  + +    ++ Q AE  L  + + FG+R+Y+ L R  
Sbjct: 108  VQKQWILNQ-PEDMIALLGMHS-DVGKMLMSSNPQKAEPLLEEWVEKFGNRVYLALTRTN 165

Query: 191  GYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      + V+LA  + + +VA N+  F++ +DYEAH+  + +A   V+    RP+  
Sbjct: 166  RPDEDNFILEAVKLAKKYNIGVVAHNDVHFMTRDDYEAHEARVCIADGYVLGDNRRPKTY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ Y K+  EM ++FSD+P A+ENT  IA+RC+  LQ+    LP +   E   I    +
Sbjct: 226  SPEQYFKSAEEMTALFSDIPSAIENTYHIAKRCNVTLQLGKYFLPDYPIPEGHTI----D 281

Query: 309  NELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE RL       Q         + Y +R+++E+N+I  M F GYFLIV D
Sbjct: 282  TFFAHLSKEGLEERLNFLYPPEQRDEDWPEIRKPYDERIEYEINIINSMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWSKSNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYELLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG + V+QI TFG++ AK A+RDV R L   Y   DR+ K+IP  
Sbjct: 402  CIAGRDRVIDYVARTYGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMIPTK 461

Query: 483  PAHPVSLQAIADDSRFREARL--ADPSVD---RLLEISQKLEGLYRHASTHAAGIVIGDR 537
            P     L+++  + + ++     ++P  D    + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGLSLLESLEAEPQLKDIVTNPSNPDHDDAAEIWEMALKLEGITRNTGKHAGGVVISPT 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
             ++    +  D      V QF+   +E AGL+KFDFLGL+ LT+++ ++  + +R     
Sbjct: 522  KITDFSAVMCDADGTGRVAQFDKDDVESAGLVKFDFLGLRNLTVIEDAVKNINKRIKADK 581

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ I  +D + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLDIAYIQLEDKDAYLVFANANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  + +R +G +    +HPL++ +L+ T G+++YQEQVMQ AQ  +GY+L  AD+LR
Sbjct: 642  MDLIPDFIHRMHGGD-FEYLHPLLEGVLEPTYGIMVYQEQVMQAAQYCAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ FI GASK  I +  A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFIEGASKKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDN 833
            QTAW+K HYP EFL+A +T EM N + +     D R+ N++++PPSVN     F  + + 
Sbjct: 761  QTAWLKAHYPAEFLSAVLTSEMQNTDNVVFLIDDCRKNNLEVLPPSVNMSLYQFHAIDEQ 820

Query: 834  RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L AIKGVG    + ++++ A + PF  L DFC R+D KK+N+R LE+L+ +GALD
Sbjct: 821  TIVYGLGAIKGVGEAAMQSVIDSRAQEGPFRDLFDFCHRIDLKKINKRTLEALIRSGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR     ++F   +     +   +        VR 
Sbjct: 881  CLGIDRADLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEV--QRKPSKPVKPWADEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+  L+        E   T RG     A +VV          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRNELKAFVPCQINELTPTRRGVTTVFAGLVVDIANFP---- 994

Query: 1013 SRIGWVTFSEPAKEYEA 1029
            +R+  +T  +     E 
Sbjct: 995  NRMM-MTLDDGTARIEI 1010


>gi|229093701|ref|ZP_04224800.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-42]
 gi|228689586|gb|EEL43394.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-42]
          Length = 1108

 Score =  983 bits (2541), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1027 (36%), Positives = 587/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  K              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEEK-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMF-GNFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + +        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPAFINRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAGRCRVEIPFHVNQLPKFPVPSNE----TND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+LV++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEALVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|226360211|ref|YP_002777989.1| DNA polymerase III subunit alpha [Rhodococcus opacus B4]
 gi|226238696|dbj|BAH49044.1| DNA polymerase III alpha subunit [Rhodococcus opacus B4]
          Length = 1178

 Score =  983 bits (2541), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/1067 (31%), Positives = 552/1067 (51%), Gaps = 53/1067 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL  H+ YS+L+GA  +  + ++    +  A+ +TD  N++ A EF   A   GI
Sbjct: 2    ADSFVHLHNHTEYSMLDGAAKVGPLFEEAERLEMSAVGMTDHGNMYGASEFYNVAKKQGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIG +  +  +                    +       + ++   A G + L +L S
Sbjct: 62   KPIIGIEAYVAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +  Q  +  R+    L     EG+I  TG  SG I         + A +    ++++
Sbjct: 122  LASIEGQLGKWARMD-EELIATHHEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI 180

Query: 178  F-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            +  D  ++ L  H    +R     +++++ T  +P +ATN+  +++++  E H+ L+ + 
Sbjct: 181  WGKDNFFLELMDHGLSIERRVREGLLEISKTLGIPPLATNDCHYVTKDAAENHEALLCIQ 240

Query: 236  HSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQV--HAPI 291
                +S   R +   D ++LK+ +EM +++ D +P A +NT+ IA R      V  H   
Sbjct: 241  TGKTLSDPTRFKFDGDGYFLKSAAEMRALWDDQVPGACDNTLLIAERVQSYDDVWAHHDR 300

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +P F   E +         LR + + GL+ R   G        ++Y  R D+E+ VI  M
Sbjct: 301  MPIFPVPEGETQGT----WLRKEVMRGLDRRFPSGP------PEEYLARADYEIGVILEM 350

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFL+V D I  A++  I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+
Sbjct: 351  GFPAYFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPE 410

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPY 469
            R+SMPD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAA++D  R    Q  +
Sbjct: 411  RVSMPDIDIDFDDRRRGEMVRYATDKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGF 470

Query: 470  SQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEG 520
            +  D++ K +P    A  +S+  I D +          R    ++P V ++ + ++ LEG
Sbjct: 471  AIADQITKALPPPIMAKDISVSGITDPNHERYKEAVEVRALIDSNPDVAKIYQTAKGLEG 530

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R+A  HA  +++   PL   +P+++  +    +T ++    E  GL+K DFLGL+ LT
Sbjct: 531  LIRNAGVHACAVIMSSEPLMDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLT 590

Query: 581  LLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  ++D +   RG+++DL  +  DD  TY LL+   TLG+FQL+ S MR  L  MQP  
Sbjct: 591  VIGDAIDNIKANRGIELDLDTLELDDTATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTG 650

Query: 640  IEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQE 693
             EDI+A+++LYRPGP+       Y +RKNG++++  IHP ++     +L +T G+I+YQE
Sbjct: 651  FEDIVAVLALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKEILADTYGLIVYQE 710

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            Q+MQIAQ ++GYSL +AD+LRRAMGKK    +++    F  G   N  S+     +++ +
Sbjct: 711  QIMQIAQKVAGYSLGQADILRRAMGKKKLSVLEEAYAGFREGMLANEFSEPAIKALWDTI 770

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNKSHAA Y ++S+ T ++K +YP E++A  +T   D+ +K   +  D R+  
Sbjct: 771  LPFAGYAFNKSHAAGYGLVSFWTGYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKMG 830

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV 872
            I ++PP VN   V+F      I + + A++ VG      I++A  +K  F    D+ +++
Sbjct: 831  ITVLPPDVNESEVNFASVGEDIRFGMGAVRNVGANVVGSIIKARKEKSKFVDFSDYLNKI 890

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D+   +++V ESL+ AG  D  G+ R  L+    +        +K       ++F  +  
Sbjct: 891  DAAACSKKVTESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAIGQFDLFGGDDA 950

Query: 933  TFSDK----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
              S      + + +    +S  R   E+ +LG Y SGHPL+  + +L           + 
Sbjct: 951  DESIASVFNVKIPE-EEWDSKHRLALEREMLGLYVSGHPLNGVEHVLSAQSDTAIPTILE 1009

Query: 989  --TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G  + +  ++ S  ++  + G         +     E  FFP
Sbjct: 1010 GDIKDGTQVTVGGILASVNRRINKNGLTWASAQLEDLTGGIEVLFFP 1056


>gi|34539911|ref|NP_904390.1| DNA polymerase III subunit alpha [Porphyromonas gingivalis W83]
 gi|34396222|gb|AAQ65289.1| DNA polymerase III, alpha subunit [Porphyromonas gingivalis W83]
          Length = 1228

 Score =  983 bits (2541), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1111 (32%), Positives = 579/1111 (52%), Gaps = 99/1111 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59
             FVHL VHS +SLL+G  ++N+++DK  AD  P IA+TD   +F   EF           
Sbjct: 3    PFVHLHVHSQFSLLDGQAAINDLVDKAIADGMPGIALTDHGAMFGIKEFYNYVEKKNSGH 62

Query: 60   --------------------------------------QKACAAGIQPIIGCQLDIDMQD 81
                                                  ++      +PI+GC+     + 
Sbjct: 63   NATLKDCRRELDQLNDSKSADMLTDEERNRIVKLQQKIEETKKLLFKPILGCEAYCARRT 122

Query: 82   NLKMTNQGKTPF-------PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
                 NQ   P+        +   ++LL     GY+ LI++VS  +   Q     RI   
Sbjct: 123  RFDKDNQIPDPYHPRRSIDASGWHLILLAKNLRGYKNLIKMVSYSWTEGQ-YYRPRIDKE 181

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR---- 190
             LQ+   EG+I+ +    G I +         AE+ +L FK+LFGD  Y+ +QRH     
Sbjct: 182  LLQKYH-EGIIVSSACLGGEIPQHIMAGEIAKAEEAILWFKELFGDDYYLEIQRHETHNP 240

Query: 191  -------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                      +     +++L     + ++ATN+  F +EED EAHD L+ ++    +   
Sbjct: 241  LGNQDVFPQQQRVNRVILELGKKLGVKVIATNDVHFCNEEDAEAHDRLICLSTGKDLDDP 300

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            +R R T   ++K  +EM +IF DLPE L NT+EI  +       +  ++P F        
Sbjct: 301  NRMRYTKQEWMKTTAEMSAIFEDLPETLSNTLEILDKVELYSIDNKALMPDFPIPPE--- 357

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             K++++ LR     G   +  +        + + ++R+DFEL  I  M F GYFLIV DF
Sbjct: 358  YKDDDDYLRFLTYEGARRKYGEDL------SDEIKERIDFELETIKGMGFPGYFLIVQDF 411

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I  A+   + VGPGRGS AGS  AY L ITDIDP+++ LLFERFLNPDR+SMPD D+DF 
Sbjct: 412  IAAARSMGVSVGPGRGSAAGSAVAYCLGITDIDPIKYHLLFERFLNPDRISMPDIDVDFD 471

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D R E++R+V  KYG ERVA IIT+G++  K++++DV R  ++P  + +RL KL+P+  
Sbjct: 472  DDGRAEILRWVTEKYGKERVAHIITYGTMATKSSIKDVARVQRLPLLESNRLAKLVPDKI 531

Query: 484  ---AHPVSLQAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                     +AI      ++A L+   V R  L+ +Q LEG  R+   HA GI+IG   +
Sbjct: 532  PGEKKVNLKKAIEFVPELKQASLSSDKVMRDTLKYAQMLEGNVRNTGVHACGIIIGKTDI 591

Query: 540  SQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
            S +VP+     +D + +L VTQ+    IE+ GLIK DFLGLKTL++++++L  + +R  +
Sbjct: 592  SDVVPVSTAPDKDTKEELLVTQYEGSVIEQTGLIKMDFLGLKTLSIIKEALVNIKRRHGI 651

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +++  IP DD  TY L +   T+G FQ ES GM++ L  +QP   ED+IA+ +LYRPGP
Sbjct: 652  DLNIDTIPLDDPLTYKLYSDGRTIGTFQFESGGMQKYLRELQPSAFEDLIAMNALYRPGP 711

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RK+G+E I    P ++  LKET GV +YQEQVM +++ L+G++  ++D LR
Sbjct: 712  MDYIPSFIARKHGREPIDYDLPEMEEYLKETYGVTVYQEQVMLLSRKLAGFTRGQSDELR 771

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +AMGKK+ E+M+  K +F+ G +KNG  + +   I+    KFA Y FNKSHA  Y+ ++Y
Sbjct: 772  KAMGKKLIEKMNVLKVKFLEGGNKNGHPEEVLEKIWTDWEKFASYAFNKSHATCYSWVAY 831

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YP E++A +++  ++N+ +I K   + +   I ++ P VN   + F V  N 
Sbjct: 832  QTAYLKANYPAEYMAGALSRNLNNITEITKLMDECKSMKIGVLVPDVNESEMKFSVNANG 891

Query: 835  I-YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               + L+A+KGVG+     I+ E  A+  +  + DF  R++    NR+ +ESL  AGA D
Sbjct: 892  DIRFGLSAVKGVGSGAVEQIIAEREANGLYKDIFDFVERINLSACNRKTMESLALAGAFD 951

Query: 893  CFGYSRMQLLQ---------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
             F  SR + +           +  + +Y   V++ + ++  ++F  E+     +      
Sbjct: 952  SFALSREEYMAPPLTGREESYIQALMRYGSVVQEEKHSQSNSLFGEEEDLMIPRPQPSPT 1011

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIRGNNIRLAAMV 1001
               N   R   E+ ++G Y S +P+  Y+ IL         +     ++ G N+ LA +V
Sbjct: 1012 EPWNDLERLNKERELVGLYLSSNPMAQYQVILDHYCNTHAADLTDPDSLVGKNLVLAGIV 1071

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                Q  +R  +    +T  + +   E   F
Sbjct: 1072 TKAFQGISRSNNPYSKITLEDLSGTGEIPLF 1102


>gi|149184684|ref|ZP_01863002.1| DNA polymerase III alpha subunit [Erythrobacter sp. SD-21]
 gi|148832004|gb|EDL50437.1| DNA polymerase III alpha subunit [Erythrobacter sp. SD-21]
          Length = 1157

 Score =  983 bits (2541), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/1035 (43%), Positives = 623/1035 (60%), Gaps = 29/1035 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L+V S+YS+LEGA+    +         PAIA+ D N L+ A+ F+    A GIQP
Sbjct: 5    PFVPLRVLSAYSMLEGAIDPKAMAKLAKERGFPAIAMADRNGLYGAVMFANACKAEGIQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +   +  +          TV  + L      GY  L  LVS+ +L    +   
Sbjct: 65   ITGTLLGVARDEEGR----------TVDYLPLYAQDEAGYDNLCHLVSKAHLERPLEFEP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I +  L E  T+GLI LTG S G + R      +  A   L   + LF  RLYV L R 
Sbjct: 115  HIRMEDL-EGRTDGLIALTGASEGGVTRLLAEGQTSHATAMLDKLEALFPGRLYVELARR 173

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E+ ++ LAY  +LPLVATN + F     Y+AHD ++ +A+ST +  ++R + 
Sbjct: 174  GNPVEEAAEAALIDLAYERDLPLVATNPANFAEPHMYKAHDAMLCIANSTHIDNEERAKS 233

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             P+ Y+K    M   F DLPEA  NT+ +A+RC++      PILP           + E 
Sbjct: 234  NPEAYVKTAHMMEEAFDDLPEATTNTLVVAQRCAYAPPYRDPILPSLAGD-----LEGEA 288

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L   A  GLE RL           + Y  RLD+E+ +I +M F GYFLIVADFI+WAK
Sbjct: 289  RMLEADARKGLEKRLEPYGEMTEEARKVYFDRLDYEVGIINQMGFPGYFLIVADFIKWAK 348

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             ++IPVGPGRGSGAGS+ A+ALTITD+DP++  LLFERFLNP+R+SMPDFDIDFC+ RR 
Sbjct: 349  DHDIPVGPGRGSGAGSLVAWALTITDLDPIQLGLLFERFLNPERVSMPDFDIDFCETRRG 408

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVIRYVQ KYGH+ VAQIITFG L+A+A LRD GR LQM Y  VDR+CK++PN P  P +
Sbjct: 409  EVIRYVQAKYGHDHVAQIITFGKLKARAVLRDTGRILQMSYGHVDRICKMVPNHPTDPWT 468

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L +A+   + F+     D  V RL++++ KLEG  R++STHAAG+VIGDRPL+QLVP+YR
Sbjct: 469  LPRALNGAADFKAEYDNDNEVKRLIDLAMKLEGFPRNSSTHAAGVVIGDRPLAQLVPLYR 528

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D RSD+PVTQ++MK +E +GL+KFDFLGLKTL++L+K+ D L +R + +DLS +  DD  
Sbjct: 529  DPRSDMPVTQYDMKNVESSGLVKFDFLGLKTLSVLKKATDLLKKRDITIDLSQLELDDPA 588

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             Y L+    T+G+FQLES GMR+ L  ++P    DIIALVSLYRPGP+DNI ++  RK G
Sbjct: 589  VYELMKAGNTVGVFQLESEGMRRTLTAVKPTNFGDIIALVSLYRPGPMDNIPLFGKRKAG 648

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +  I   H  ++ +L ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKK++ EMD 
Sbjct: 649  EVPIEYPHEKLEGILAETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKVQAEMDI 708

Query: 728  QKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            Q+ERF++G    +GI K  A  +F+L+ KFA YGFNKSHAAAYA+++YQTAWMK HYP E
Sbjct: 709  QRERFVAGCKDVSGIEKAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWMKAHYPEE 768

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----NRIYYSLAAI 842
            F AASM  +M   EK+  F  DAR+  I + PP +N    +F V        + Y+LA I
Sbjct: 769  FFAASMCFDMHQSEKLTIFVDDARRQGIAVEPPCLNKSEAEFTVEQTDTGYAVRYALAGI 828

Query: 843  KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            + VG     +I+        FDSL+D   R+    +N R LE+L  AGALD    +R ++
Sbjct: 829  RNVGEKAMENIVAEREVSGQFDSLQDLFERIPKGSMNSRQLEALACAGALDSLEPNRSKV 888

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             ++ D +   A   ++ RT+   ++F  +     + + L +      + R   E+   GF
Sbjct: 889  FENADMLLAVADAADRERTSGQASMFGGDDAP-GETLRLREVEDWPRAERMARERENFGF 947

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVA--TIRG--NNIRLAAMVVSKQQKKTRKGSRIGW 1017
            YFS HP+  +K I    G + Y   ++     G  +N  +AAMV    +  TR+G     
Sbjct: 948  YFSNHPVAAWKDIASANGARTYASLMSGGAPAGGRSNAVMAAMVEKVNKGTTRRGKPFIR 1007

Query: 1018 VTFSEPAKEYEANFF 1032
              FS+   ++ A  F
Sbjct: 1008 ADFSDATGQFSAACF 1022


>gi|229076107|ref|ZP_04209075.1| DNA polymerase III subunit alpha [Bacillus cereus Rock4-18]
 gi|228706970|gb|EEL59175.1| DNA polymerase III subunit alpha [Bacillus cereus Rock4-18]
          Length = 1108

 Score =  983 bits (2541), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1026 (36%), Positives = 588/1026 (57%), Gaps = 47/1026 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKYGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  K              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEEK-----------SYPLVLLAEDEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMF-GHFYMSLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS   EA+ NTV+IA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHTEEAIYNTVKIAERCKVEIPFHVNQLPKFPVPSNE----TND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL  R        G   + + +RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  TYLRRVCEEGLHKRY-------GAPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+  + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERQHFVQGCLRNGYDETSADKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ +K +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEERESKMFEDLFEFCLRMPAKFVTERNLEAFVWSGCFDDFGISRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
               Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF +   E 
Sbjct: 920  TAQYVKLAKELEIPSLAQAMRNKKKVQ-RAIVYITSVRVIRTKKLQKMAFITFCDQNDEM 978

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 979  EAVVFP 984


>gi|239504052|ref|ZP_04663362.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB900]
          Length = 1187

 Score =  982 bits (2540), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1039 (36%), Positives = 581/1039 (55%), Gaps = 47/1039 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + +++     D+ PA+A+TD +NL +A++F       GI+PI
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  +                         LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   LGSTI---------------RLNDAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + +I+L G  S  + +    ++ Q AE  L  + + FG+R+Y+ L R  
Sbjct: 108  VQKEWVLEQH-QDIIVLLGQHS-DVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTD 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     +  +LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   RPR  
Sbjct: 166  RPGEEDFIQEAAKLAAKYNIGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDRRPRLY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ Y K   EM+ +FSD+P A+ENT +IA+RC+  L++    LP +   +   I    +
Sbjct: 226  SPEQYFKTSDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTI----D 281

Query: 309  NELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE RL       +         + Y +R+D+E+ +I +M F GYFLIV D
Sbjct: 282  TYFEHLSKEGLEERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            P       AI  + + ++         +     + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLATAIEMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +     D
Sbjct: 522  KITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSND 581

Query: 598  ---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               +S +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  + +R +G E    +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L  AD+LR
Sbjct: 642  MDLIPDFIHRMHGGE-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TAW+K HYP EF+AA M+ EM N + +     D R   + ++PPSVN     F   D++
Sbjct: 761  HTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLDVLPPSVNMSTYHFHASDDK 820

Query: 835  IY-YSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               Y L AIKGVG    + +++      P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR +   ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVLDVANFP---- 994

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
            +R+  V   +     E + 
Sbjct: 995  NRVVIV-LDDGTARIEVSC 1012


>gi|311745732|ref|ZP_07719517.1| DNA polymerase III, alpha subunit [Algoriphagus sp. PR1]
 gi|126575175|gb|EAZ79525.1| DNA polymerase III, alpha subunit [Algoriphagus sp. PR1]
          Length = 1428

 Score =  982 bits (2540), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1074 (33%), Positives = 562/1074 (52%), Gaps = 68/1074 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL VHS YS+L+    +  ++ K      PAIA+TD  N+ +A  F ++A +  I+P
Sbjct: 243  PFTHLHVHSQYSVLQATSEIPAMVAKAKEMGMPAIAMTDHGNMMAAFHFVKEALSNDIKP 302

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC      + NL    + K+        VL+     GY  L +L S   +        
Sbjct: 303  ILGC------EFNLCRDRKNKSSKDDGYQTVLIAKNKAGYHNLAKLASYANIEG-FYYLP 355

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    LQ+     LI  TGG  G I           AE+  L +K+ FG+  YV L RH
Sbjct: 356  RIDKEVLQQY-KGDLIATTGGLWGEIPFLILNVGETQAEEAFLWWKEQFGEDFYVELCRH 414

Query: 190  RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-- 246
               +  + ++ +++ A  H++   A NNS + ++ D +AHD+L+ V    +V +  +   
Sbjct: 415  GIPEEEKVNEVLLEFAKKHDVKYFAANNSYYTNKADAKAHDILLCVKDGELVEKPKKYIG 474

Query: 247  ---------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP---- 293
                         ++Y+K+  EM  +F+DLPEA+E T EI  +          +LP    
Sbjct: 475  KRGREFRYGFPNDEYYIKSPEEMKKLFADLPEAIECTAEITDKIEPYKLAREVLLPAFDI 534

Query: 294  ----RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                +  E E D  ++ E   LR+    G + R  +          +  +RLDFEL  I 
Sbjct: 535  PDEFKHPEDEVDGGKRGENAFLRHLTYEGAKKRYEE-------ITPEIEERLDFELKTIE 587

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               + GYFLIV DFI  A+K  + VGPGRGS AGS  AY   IT+IDP+ ++LLFERFLN
Sbjct: 588  NTGYPGYFLIVQDFIVEARKLGVSVGPGRGSAAGSAVAYCTGITNIDPIAYNLLFERFLN 647

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            PDR+S+PD DIDF    R +VI YV  KYG  +VAQIIT+G++ AK+A+RD  R L +P 
Sbjct: 648  PDRVSLPDIDIDFDDHGRQKVIDYVIKKYGANQVAQIITYGTMAAKSAIRDTARVLNLPL 707

Query: 470  SQVDRLCKLIPNDPAH---PVSLQAIADDSRFREARLADPSVDRLLEISQK--------- 517
            +   RL  L+P+        ++    A   + +         D L+ IS+          
Sbjct: 708  ADAGRLANLVPDIKLKALFGLAGNRAALSDKLKGQGELIAKADELIRISKGQDESAKTIN 767

Query: 518  ----LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
                LEG  R+   HA G++I    ++  VP+     SD+  TQF+   +E AGL+K DF
Sbjct: 768  QATMLEGSVRNLGIHACGVIITPDDITNFVPVALAKDSDMVCTQFDNSVVESAGLLKMDF 827

Query: 574  LGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGLKTLTL++ ++  + +R  +++D    P DD +TY L     T+GIFQ ES+GM++ +
Sbjct: 828  LGLKTLTLIKDAVKIVKERHGIELDPEKFPIDDVKTYELFQRGETVGIFQYESAGMQKYM 887

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
              ++P    D+IA+ +LYRPGP++ I  +  RK+G+E I      ++  L ET G+ +YQ
Sbjct: 888  RELKPTVFADLIAMNALYRPGPLEYIPSFIRRKHGEEPITYDLDDMEEYLNETYGITVYQ 947

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM ++Q L+G++  EADVLR+AMGKK+K+ +DK K +F++ A++ G  K+    I++ 
Sbjct: 948  EQVMLLSQKLAGFTKGEADVLRKAMGKKLKDVLDKMKPKFVNQAAEKGHDKSKLEKIWKD 1007

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
               FA Y FNKSH+  YA ++YQTA++K HYP E+LA+ ++  M+++ ++  F ++ ++ 
Sbjct: 1008 WEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYLASVLSNNMNDISQVTFFMEECKRS 1067

Query: 813  NIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCS 870
             I ++ P VN     F V  +  I + +AAIKG G+     I+ E   + PF +L DF  
Sbjct: 1068 GIPVLGPDVNESKNGFTVNAEGEIRFGMAAIKGAGSAAVDEIIKEREENGPFKNLFDFAK 1127

Query: 871  RVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVEKNRTNK 922
            RV+SK LN++ +E+L  AG  DCF  + R Q L++       ++   KYAQ V++   + 
Sbjct: 1128 RVNSKALNKKTMEALAMAGGFDCFPEHHRRQYLEAADGDLTLIEKATKYAQKVQQEEESA 1187

Query: 923  HENIFAHEKGTFSDKIT-LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
              ++F    G+    +  +      +   +   E+ V+G Y SGHPLD Y+  +      
Sbjct: 1188 QVSLFGGSSGSMDIPLPSVAPMEPFSQLQQLNIEKEVVGLYISGHPLDQYRLEIESFTNA 1247

Query: 982  GYEESVAT---IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +            I+LA  V S   + T+ G   G +T  +    +   FF
Sbjct: 1248 NLPDLNDIDSFKNKKEIKLAGSVSSFAHRTTKNGKPFGTLTMEDYHGGF--TFF 1299


>gi|294635137|ref|ZP_06713647.1| DNA polymerase III, alpha subunit [Edwardsiella tarda ATCC 23685]
 gi|291091473|gb|EFE24034.1| DNA polymerase III, alpha subunit [Edwardsiella tarda ATCC 23685]
          Length = 904

 Score =  982 bits (2540), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/918 (42%), Positives = 561/918 (61%), Gaps = 38/918 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P F+HL VHS YS+++G    + ++ K+AA   PA AITD  NL   ++F   A  AGI+
Sbjct: 4   PRFIHLHVHSDYSMIDGLAKTSPLVKKVAALGMPAFAITDHTNLCGLVKFYGSAHGAGIK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           P++G  + +          + +     + S+ +L S   GYQ L +L+S  Y    G + 
Sbjct: 64  PLVGADVLM----------RSEMMGDELASLTILASDNTGYQNLTQLISHAYQRGYGAEG 113

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I   WL +   +GLI+L+G   G + +     +     + +  +++ F D  ++ L R
Sbjct: 114 PTIDRDWLVQY-RQGLILLSGARQGDVGKLLLRGNQASVNECVDFYQRYFPDCYFLELVR 172

Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
               D        V+LA   +LPLVA+N+  FL   D++AH++ +A+     +    RP 
Sbjct: 173 TGRPDEENYLHMAVELAQQRDLPLVASNDVRFLEASDFDAHEIRVAIHDGYTLDDPKRPR 232

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +   Y+++ +EM  +F+DLPEAL+N+VEIA+RC+  +++    LP+F   E       
Sbjct: 233 NYSAQQYMRSEAEMCELFADLPEALQNSVEIAKRCNVTIRLGEYFLPQFPTGEM-----T 287

Query: 307 EENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E  L  KA  GLE RL         +      Y +RL+ EL VI +M F GYFLIV +F
Sbjct: 288 TEAFLVKKAHEGLEERLTFLFPDEAERARCRPPYDERLEIELKVINQMGFPGYFLIVMEF 347

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           IQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLAFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            ++RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408 MEKRDRVIDHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468 GMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
           P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  +      D+
Sbjct: 527 PLYCDAEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRARHGLEPVDI 586

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
           + IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 587 AAIPLDDQKSFDILQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646

Query: 659 V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           +   + +RK+G+E++        H  + P+L+ T GVI+YQEQVMQIAQ+L+GYSL  AD
Sbjct: 647 MVDNFIDRKHGREELSYPDREWQHESLKPVLEPTYGVILYQEQVMQIAQVLAGYSLGGAD 706

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           +LRRAMGKK  EEM KQ+  F  GA  NG+   +A++IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707 LLRRAMGKKKPEEMAKQRSVFEEGARNNGVDGELAMHIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
           +SYQT W+KTHYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 767 VSYQTLWLKTHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYHFHVN 826

Query: 832 DNRIY-YSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           D     Y + AIKGVG      I+EA        F  L D C+R D+KKLNRRV+E L+ 
Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIEARNRGEQGYFKDLFDLCARTDTKKLNRRVMEKLIM 886

Query: 888 AGALDCFGYSRMQLLQSL 905
           +GA D  G  R  L+ SL
Sbjct: 887 SGAFDRLGPHRAALMSSL 904


>gi|228910428|ref|ZP_04074243.1| DNA polymerase III subunit alpha [Bacillus thuringiensis IBL 200]
 gi|228849194|gb|EEM94033.1| DNA polymerase III subunit alpha [Bacillus thuringiensis IBL 200]
          Length = 1105

 Score =  982 bits (2540), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1025 (36%), Positives = 587/1025 (57%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+IG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++  +              +VLL     GYQ L+++ S +      K    I 
Sbjct: 62   LTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEGIP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    ++   AE+   T++ +F    Y++LQ H   
Sbjct: 107  KKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMF-GHFYMSLQHHAIQ 164

Query: 193  DRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  D
Sbjct: 165  DELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 252  HY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             Y LK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     +      +  
Sbjct: 225  QYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNE----TSDIY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL  R        G   + + +RLD ELNVI+RM FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLRKRY-------GAPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK-D 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 453  AYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A +   ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +  A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLQNGYDEMSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+    
Sbjct: 812  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA               A + G    K    +    +   +   E+  LGFY S +P  
Sbjct: 872  EYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|157693324|ref|YP_001487786.1| DNA polymerase III DnaE [Bacillus pumilus SAFR-032]
 gi|157682082|gb|ABV63226.1| DNA-directed DNA polymerase III alpha subunit [Bacillus pumilus
            SAFR-032]
          Length = 1111

 Score =  982 bits (2540), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1026 (35%), Positives = 576/1026 (56%), Gaps = 39/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+VHLQVHS YSLL  A  +  ++ K       A+A+TD + ++  +EF ++     I+P
Sbjct: 2    SYVHLQVHSGYSLLSSAAKVKELVLKAKELGYKALALTDDHVMYGTVEFYKECKKHDIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +I           L  +            +VLL    EGYQ LI++ S +    + K   
Sbjct: 62   VI----------GLTASVFIDEQETEAYPLVLLAKNNEGYQNLIKISSVL----KSKSKA 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
             +   WL+     GLI +T G SG I+     +  + A       K +FG+  +Y+ LQ 
Sbjct: 108  GLKEKWLKSYHR-GLIAITPGVSGYIETLLQHDQIEEAHHAAKQLKHIFGEGHVYIALQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +  D    +++  ++   ++PLVAT +  ++  ED  A+  L A+     + + +  R 
Sbjct: 167  FQ-QDESLVAKLRDVSKMADIPLVATGDVHYIKREDKMAYTCLKAIKAGQQLPEVEEDRA 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + + +   EM   ++   E L  TVEIA RC   L +    LP +   +    Q   +
Sbjct: 226  --EKHFRTFEEMKEWYTQDTELLTRTVEIADRCEVDLNLGQTKLPSYPTPD----QSTAD 279

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     G++ R       K      Y +RL++EL++I +M FS YFLIV DF+++A 
Sbjct: 280  QFLRKVCAEGMKQR-------KIASNDAYVKRLEYELSIIQKMNFSDYFLIVWDFMKYAH 332

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I  GPGRGS AGS+ AY L ITD+DPL   LLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 333  DQGIVTGPGRGSAAGSLVAYVLFITDVDPLCHGLLFERFLNPERISMPDIDIDFPDTRRD 392

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+I YV++KYG   VAQI+TFG+L AKAALRDVGR + +     DRL KLIP+ P   + 
Sbjct: 393  EIISYVKDKYGDMHVAQIVTFGTLAAKAALRDVGRVMGIDSKAADRLAKLIPSKPGTTLK 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+      +        + ++ + + K+EGL RH STHAAG+V+ + PL+++VP+  D
Sbjct: 453  -EALTASPELKTMLQQSEELSQVFQTALKVEGLPRHTSTHAAGVVLSEEPLTEIVPIQ-D 510

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHE 607
                + +TQ+ M ++E  GL+K DFLGL+ LTL++   + +  Q  V ++ S I ++D +
Sbjct: 511  GHDGVYLTQYAMNYLEDLGLLKMDFLGLRNLTLIESIKNQIERQENVHINFSDISYEDQK 570

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL+   T GIFQLES GMRQ L  ++P  +EDI+A+ +LYRPGP++NI ++ +RK+G
Sbjct: 571  TFELLSAGDTTGIFQLESQGMRQVLRRLKPSSLEDIVAVNALYRPGPMENIPLFIDRKHG 630

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            + K+   HP +  +LK+T GVI+YQEQ+M IA  ++G+ L EAD+LRRA+ KK K+ +D+
Sbjct: 631  RVKVSYPHPDLYDILKDTYGVIVYQEQIMLIAAKMAGFQLGEADLLRRAVSKKDKKVLDE 690

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ G  K      IA ++++L+ KFA+YGFN+SHA AY++I +Q A++K HYP+ F
Sbjct: 691  ERSHFVEGCLKKEYPVNIANDVYDLIVKFANYGFNRSHAVAYSMIGFQLAYLKAHYPLYF 750

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N +K+ ++  +A++  I ++ PS+N     F V    I YSL AIK VG 
Sbjct: 751  MCGLLTSVIGNQDKVAQYFYEAKEKGISVLKPSINKSEFPFTVEKGEIRYSLRAIKNVGV 810

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +  + I  A  +KPF+ L DFC+RV +K +NR+ +E+L+F+GA+D    +R  LL S+D 
Sbjct: 811  SAVKDIYRARQEKPFEDLFDFCARVSAKSVNRKTIEALIFSGAMDELYPNRASLLASIDI 870

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
               +  ++     +   +       TFS K    +          + E+  LG Y S HP
Sbjct: 871  ALDHVSFL---NPDDQLDFLGDT--TFSIKPKYAEIEELPLVDLLQFEKEALGLYLSNHP 925

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            +  Y+  LR+ G        + I+   + +  ++   +  +T+ G  + +VTF +   E 
Sbjct: 926  VQAYRDRLRENGAVEIIRLSSFIK-RKVSMGGLLTKVKSIRTKNGQSMAFVTFGDETGEM 984

Query: 1028 EANFFP 1033
            E   FP
Sbjct: 985  EGVVFP 990


>gi|256819216|ref|YP_003140495.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM 7271]
 gi|256580799|gb|ACU91934.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM 7271]
          Length = 1485

 Score =  982 bits (2539), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1085 (32%), Positives = 559/1085 (51%), Gaps = 78/1085 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            F HL  H+ +S+L+   S+ +++   A ++ PA+A+TD+ N+ +A  F Q   A      
Sbjct: 255  FAHLHNHTQHSILQSTTSIKDLVKITAKEKMPAVALTDSGNMMAAFHFVQAVQAHNKEAE 314

Query: 67   -----------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                             I+PIIGC      + N+   +  ++       +V+L    +GY
Sbjct: 315  AKNKEAEEKGETPTETLIKPIIGC------EFNICENHLDRSRQDNGYQVVILAKNKQGY 368

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L ++ S            RI    + E     LI+L+GG +G +        ++ AE+
Sbjct: 369  HNLTKMASIASTKG-FYYVPRIDK-VIVEQYKSDLIVLSGGMNGEVPSKILNIGTKQAEE 426

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             LL +K+ FG+  Y+ + RH   D  R ++ +V+ +  + + L+ATNN+ +L ++D  AH
Sbjct: 427  ALLWWKEQFGEDFYLEVMRHNQEDENRVNETLVEFSKKYGVKLIATNNTFYLHKKDANAH 486

Query: 229  DVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            D+L+ V                       ++Y K  +EM ++F D+PEA+ N  EI  + 
Sbjct: 487  DILLCVKDGEKQKTPIGRGRGYRFGMPNNEYYFKTSAEMKALFKDIPEAILNIQEIIDKV 546

Query: 282  SFILQVHAPILPRFIEKE------CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
                     +LP+F   E          +K E N LR+    G + +  +          
Sbjct: 547  EPYGLARDILLPKFDIPEEFQVEEDPTGKKGENNYLRHLTYEGAKRKYPE-------ITD 599

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            + R+RLDFEL++I +  + GYFLIV DFI  A++ N+ VGPGRGS AGS  A+ L IT++
Sbjct: 600  EVRERLDFELSIIEKTGYPGYFLIVQDFIAAARRMNVSVGPGRGSAAGSAVAFCLDITNM 659

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DP+++ LLFERFLNPDR+SMPD DIDF    R +VI YV +KYG  +VA+IIT+G + AK
Sbjct: 660  DPIKYDLLFERFLNPDRVSMPDIDIDFEDSGRQDVINYVIDKYGESQVARIITYGKMAAK 719

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPA-----HPVSLQAIADDSRFREARLADPSVDR 510
            +A++D  R L +P  + +RL  L+PN  +          + + +  R  E    D     
Sbjct: 720  SAIKDTARVLDVPLQESNRLAGLVPNGVSSLGKMFGWDDKTLKEKVRSEELPKVDELKRL 779

Query: 511  L-----------LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
            L           ++ +  +EG  R+   HA G++I    ++  VP+     SDL VTQF+
Sbjct: 780  LAGEGEEESTQTIQQANIIEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDLFVTQFD 839

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTL 618
               +E AGL+K DFLGL TLTL++ +++ + Q   +++D    P DD +TY L     T+
Sbjct: 840  NSVVESAGLLKMDFLGLSTLTLIKDTIENIKQTHNIELDAEAFPLDDKKTYELFQRGETV 899

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            GIFQ ES+GM++ +  ++P    D+IA+ +LYRPGP++ I  +  RK+G E I    P +
Sbjct: 900  GIFQYESTGMQKYMRELKPTVFADLIAMNALYRPGPLEYIPSFIKRKHGIESIEYDLPDM 959

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  LKET G+ +YQEQVM ++Q L+G++  EADVLR+AMGKK    + K K +FI+ AS+
Sbjct: 960  EEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQIAVLAKMKPKFITQASE 1019

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             G        I+    KFA Y FNKSH+  YA + YQTA++K +YP E++AA ++  M++
Sbjct: 1020 KGHDAQKLEKIWADWEKFAAYAFNKSHSTCYAWVGYQTAYLKANYPAEYMAAVLSNNMND 1079

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEAS 857
            ++ I  F ++  +  ++++PP VN     F V  N    + + A+KGVG      I+E  
Sbjct: 1080 IKTITFFLEECHRMGVKVLPPDVNESLYKFTVNKNGDIRFGMGAVKGVGKAAVDTIVEQR 1139

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQ 909
             ++P+ S+ D   RVD K +N++  ES+  AG  D F    R Q   +       L+   
Sbjct: 1140 QERPYTSIFDLAKRVDYKSINKKAFESIALAGGFDSFTNVHRAQYFHAEADGIPFLEKAI 1199

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++    ++++ +   ++F  E      +  + K     +  +   E+ V+G Y SGHPLD
Sbjct: 1200 RFGTKYQESKNSAQMSLFGGESEVDIPEPAVPKCETWGNLEQLRREKEVVGIYISGHPLD 1259

Query: 970  VYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             +K  L+        E           + +A MV   Q +  + G   G+ T  +    Y
Sbjct: 1260 DFKHELQNFCNISLSELQDLQPFINRELTVAGMVADLQHRTAKNGKGYGFFTLEDYDGSY 1319

Query: 1028 EANFF 1032
            E   F
Sbjct: 1320 EFKLF 1324


>gi|228954873|ref|ZP_04116893.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            kurstaki str. T03a001]
 gi|228804862|gb|EEM51461.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            kurstaki str. T03a001]
          Length = 1105

 Score =  982 bits (2538), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1025 (36%), Positives = 589/1025 (57%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+IG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++  +              +VLL     GYQ L+++ S +      K    I 
Sbjct: 62   LTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEGIP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    ++   AE+   T++ +F    Y++LQ H   
Sbjct: 107  KKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMF-GHFYMSLQHHAIQ 164

Query: 193  DRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  D
Sbjct: 165  DELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 252  HY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             Y LK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     +      +  
Sbjct: 225  QYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNE----TSDIY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL  R        G   + + +RLD ELNVI+RM FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLRKRY-------GEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK-D 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 453  AYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A +   ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+    
Sbjct: 812  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA               A + G    K    +    +   +   E+ VLGFY S +P  
Sbjct: 872  EYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|229081856|ref|ZP_04214348.1| DNA polymerase III subunit alpha [Bacillus cereus Rock4-2]
 gi|228701444|gb|EEL53938.1| DNA polymerase III subunit alpha [Bacillus cereus Rock4-2]
          Length = 1105

 Score =  982 bits (2538), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1025 (36%), Positives = 589/1025 (57%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+IG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++  +              +VLL     GYQ L+++ S +      K    I 
Sbjct: 62   LTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEGIP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    ++   AE+   T++ +F    Y++LQ H   
Sbjct: 107  KKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMF-GHFYMSLQHHAIQ 164

Query: 193  DRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  D
Sbjct: 165  DELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 252  HY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             Y LK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     +      +  
Sbjct: 225  QYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNE----TSDIY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL  R        G   + + +RLD ELNVI+RM FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLRKRY-------GEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDI+P+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDINPIEYDLLFERFLNPERVTLPDIDIDFPDVRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK-D 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 453  AYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A +   ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+    
Sbjct: 812  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA               A + G    K    +    +   +   E+ VLGFY S +P  
Sbjct: 872  EYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|229152799|ref|ZP_04280982.1| DNA polymerase III subunit alpha [Bacillus cereus m1550]
 gi|228630619|gb|EEK87265.1| DNA polymerase III subunit alpha [Bacillus cereus m1550]
          Length = 1105

 Score =  982 bits (2538), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1025 (36%), Positives = 588/1025 (57%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+IG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++  +              +VLL     GYQ L+++ S +      K    I 
Sbjct: 62   LTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEGIP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    ++   AE+   T++ +F    Y++LQ H   
Sbjct: 107  KKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMF-GHFYMSLQHHAIQ 164

Query: 193  DRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  D
Sbjct: 165  DELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 252  HY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             Y LK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     +      +  
Sbjct: 225  QYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNE----TSDIY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL  R        G   + + +RLD ELNVI+RM FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLRKRY-------GEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK-D 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 453  AYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A +   ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFIQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+    
Sbjct: 812  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA               A + G    K    +    +   +   E+  LGFY S +P  
Sbjct: 872  EYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|15605274|ref|NP_220060.1| DNA polymerase III subunit alpha [Chlamydia trachomatis D/UW-3/CX]
 gi|14194664|sp|O84549|DPO3A_CHLTR RecName: Full=DNA polymerase III subunit alpha
 gi|3328984|gb|AAC68147.1| DNA Pol III Alpha [Chlamydia trachomatis D/UW-3/CX]
 gi|297748675|gb|ADI51221.1| DNA polymerase III alpha subunit [Chlamydia trachomatis D-EC]
 gi|297749555|gb|ADI52233.1| DNA polymerase III alpha subunit [Chlamydia trachomatis D-LC]
          Length = 1237

 Score =  982 bits (2538), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1076 (34%), Positives = 576/1076 (53%), Gaps = 60/1076 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+   + K    Q PA+A+TD  NLF A+EF +      I+P
Sbjct: 2    TWIPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +          + K+       ++LL    EGY+ L  L S  Y         
Sbjct: 62   IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYTEG-FYYVP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q H
Sbjct: 119  RIDRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLH 176

Query: 190  RGYDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +  +                            V+  +    +P VATN+  +L+ +D+ A
Sbjct: 177  KSSEEKVALFEETWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLA 236

Query: 228  HDVLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+          A  ++ + + K +   + + Y K+  E+  +F+  PE + NT  +
Sbjct: 237  HEILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEIAELFAAHPETITNTCIV 296

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---G 326
            A RC   L       P ++ +         E E        L      GL  +      G
Sbjct: 297  AERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLG 356

Query: 327  AIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
             IAK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSGA
Sbjct: 357  HIAKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGA 416

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + 
Sbjct: 417  GSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDN 476

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            VAQIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S  A+  D   R+  
Sbjct: 477  VAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELRQLY 534

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
            + D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK 
Sbjct: 535  VDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKP 594

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            +E  G++K DFLGLKTLT +  +   +  + G+ +  + IP DD  T+ LL    T+GIF
Sbjct: 595  VESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIF 654

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            Q+ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P+
Sbjct: 655  QMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPI 714

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NGI
Sbjct: 715  LKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGI 774

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
              +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK
Sbjct: 775  DPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEK 834

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK 860
            + K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    + 
Sbjct: 835  VGKLIQEAHSMNILVLPPDINESGQDFEATQKGIRFSLGAVKGVGMSIVDSIVEEREKNG 894

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            P+ SL+DF  R D KK+ ++ LE+LV AG  DCF  ++   L  L+++       +K   
Sbjct: 895  PYKSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEAA 954

Query: 921  NKHENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                  F+ +          ++ E     +     + E+ +LG Y + HP+D  + +L  
Sbjct: 955  TGVLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPF 1014

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032
            + +    +      G  IR   ++     K  + +  +   +  S+    YE   +
Sbjct: 1015 LSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070


>gi|229129888|ref|ZP_04258854.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-Cer4]
 gi|228653579|gb|EEL09451.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-Cer4]
          Length = 1105

 Score =  981 bits (2537), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1025 (36%), Positives = 588/1025 (57%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+IG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++  +              +VLL     GYQ L+++ S +      K    I 
Sbjct: 62   LTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEGIP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    ++   AE+   T++ +F    Y++LQ H   
Sbjct: 107  KKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMF-GHFYMSLQHHAIQ 164

Query: 193  DRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  D
Sbjct: 165  DELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 252  HY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             Y LK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     +      +  
Sbjct: 225  QYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNE----TSDIY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL  R        G   + + +RLD ELNVI+RM FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLRKRY-------GEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK-D 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 453  AYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A +   ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKIGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+    
Sbjct: 812  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA               A + G    K    +    +   +   E+  LGFY S +P  
Sbjct: 872  EYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|146329848|ref|YP_001209597.1| DNA polymerase III, alpha subunit [Dichelobacter nodosus VCS1703A]
 gi|146233318|gb|ABQ14296.1| DNA polymerase III, alpha subunit [Dichelobacter nodosus VCS1703A]
          Length = 1175

 Score =  981 bits (2537), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1053 (38%), Positives = 601/1053 (57%), Gaps = 47/1053 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +V L VHS YSL +  L +++I+         +IA+TD NNL++A++F Q A  A I+P
Sbjct: 3    DYVPLHVHSEYSLNDSLLRIHDIVAFAQTHDLTSIALTDRNNLYAAIKFYQCARRAKIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC L I            +     +  ++LL   A G++ L ELVS  Y  DQ    +
Sbjct: 63   ILGCDLSI------------RDEVGQIHQLILLAQNALGFRHLCELVSFAYTHDQTPNEI 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +  + L     +GLI L+GG  G + +A      + A +    ++K+F +R Y+ + R 
Sbjct: 111  AVDKTRLTAEQCQGLIALSGGEEGDVGKAIARGDRKHALQCATHWQKIFSNRFYLQIARF 170

Query: 190  RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
               +    SQ + ++     +  VATN + F +  D++ H+  + +A    +    R  R
Sbjct: 171  GQTEPPLFSQNLAEIGQKLRIAAVATNLACFKTAADFDYHEARVCIASGDTIDNPKRVRR 230

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             TP H+L+   ++  IF+D P+ L NT  IA+RC+ +L +    LP F   EC DI    
Sbjct: 231  FTPQHHLRAPQDLAQIFADAPQLLVNTELIAQRCNVVLSLGKHYLPDFPLPECIDI---- 286

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFI 364
            E  L  +A  GLE RL Q        A+    Y++RL  EL VI RM+F GYFLIVADFI
Sbjct: 287  ERYLVQEAERGLEERLVQLFPDPQIRAEKTALYQERLQTELAVINRMQFPGYFLIVADFI 346

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            QWAK +++PVGPGRGSGAGS+ A+ L IT++DP+ + LLFERFLNP+R+SMPDFD+DFC 
Sbjct: 347  QWAKNHDVPVGPGRGSGAGSLVAFCLKITELDPMAYDLLFERFLNPERVSMPDFDVDFCM 406

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            ++RD+VIRYV +KYGH++V+QI T G++ AKA +RDVGR L +PY  VD++ K++PN   
Sbjct: 407  NKRDDVIRYVADKYGHDKVSQIATHGTMAAKAVIRDVGRVLSLPYPVVDKISKMVPNTLG 466

Query: 485  HPVSLQAIADDS----------RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              +       +              +    D  V  L++I+  LEGL R+   HA G+VI
Sbjct: 467  VTLPDALGKTEKSRTHPEFFSAELTKRYEEDEEVKYLIDIALPLEGLARNVGKHAGGVVI 526

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
                L+    +Y +      VTQF+ + IE AGL+KFDFLGL+TLT++  ++  + Q   
Sbjct: 527  APTTLTDFSALYCEHAGSALVTQFDKEDIEAAGLVKFDFLGLRTLTVIDWAVQNVNQYAP 586

Query: 595  KV---DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                 D+  I  DD  T+ LL +  T  +FQLESSGM+  +  +QPD  ED+IALV+L+R
Sbjct: 587  ANEKLDIRQIRDDDEATFQLLKSGKTTAVFQLESSGMKNLIAKLQPDNFEDLIALVALFR 646

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+ + +V  + NRK+G+ K+V  HP +  +LK T GV++YQEQVMQ+AQ+L+ YSL E
Sbjct: 647  PGPLQSGMVDDFINRKHGRAKVVYPHPALAEILKNTYGVMVYQEQVMQVAQILAKYSLGE 706

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQK  F++ AS  G+ + +A++IF+L+AKFA+YGFNKSH+AAY
Sbjct: 707  ADLLRRAMGKKKPEEMAKQKGTFVARASAGGVDEQVAIDIFDLMAKFAEYGFNKSHSAAY 766

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQTAW+K HYP  F+AA +T EMD  EKI     +  +  ++I+PPS+N    DF 
Sbjct: 767  ALLSYQTAWLKAHYPAAFMAAVLTSEMDKTEKIVLLIDECHEMGLRILPPSINHSAYDFT 826

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            +     I + L AIKGVG      I+ E      F SL D C R+D K L R+ LE+L++
Sbjct: 827  INQQGEILFGLGAIKGVGQAVIEQILAERRRGGAFQSLTDLCQRLDLKTLKRKTLETLIY 886

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-SDKITLEKFSVE 946
            AGA D    +R  L   L    K A+   +++ N+  N+F+          + L   +  
Sbjct: 887  AGAFDLIEKNRGALFAVLPQALKLAEQYHQDKKNRQTNMFSLLDAAHCEAHLALNPENSW 946

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--------IRLA 998
                +   E+ VLG + SGHP  V   ++R +  K   E    +              L 
Sbjct: 947  QPQQQLMWEKSVLGLFLSGHPAQVAAEMIRPICPKNIAEIQHELNQKTPHQGEYHFFYLG 1006

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             ++V K+   ++KG    ++T  + + + E   
Sbjct: 1007 GLLVDKRNITSKKGKNFCFITIDDCSGKIEIAV 1039


>gi|288575454|ref|ZP_06393727.1| DNA polymerase III, alpha subunit [Neisseria mucosa ATCC 25996]
 gi|288567673|gb|EFC89233.1| DNA polymerase III, alpha subunit [Neisseria mucosa ATCC 25996]
          Length = 1124

 Score =  981 bits (2537), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1017 (38%), Positives = 569/1017 (55%), Gaps = 34/1017 (3%)

Query: 26   ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKM 85
             + +  ++ K      PA+ I+D  N F  ++F +   +AGI+P+    + I   +    
Sbjct: 1    MVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIKPVGAADVWIGNPNAPDK 60

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRICLSWLQEIGTEGL 144
                          +L++    GY RL EL++  Y+  D+      +   WL+     GL
Sbjct: 61   ----------PFRAMLVIRNDAGYLRLSELLTTAYVGKDRNVHHAELNPEWLENGDNSGL 110

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH--RGYDRYRESQVVQ 202
            I L+G   G +       +   A    L +   F D  Y+ LQR   R       S  V+
Sbjct: 111  ICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWEACVSGSVK 170

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMV 261
            LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K RPR  TP  +      M+
Sbjct: 171  LAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQFFIPPETML 230

Query: 262  SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
              F+DLPEALENTVEIA+RC+  + +    LP F   +   +    ++ L   +  GL+ 
Sbjct: 231  ERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDGLSL----DDYLVKLSNEGLQE 286

Query: 322  R---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            R   L      +     +Y++RLDFELN+I +MKF GYFLIV DFI WAK +  PVGPGR
Sbjct: 287  RMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPVGPGR 346

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+DFCQ  R  VI YV+ KY
Sbjct: 347  GSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYVREKY 406

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSR 497
            G E V+QI+TFG++ +KA +RDVGR L++P++  D+L KLIP +   P+ L  A+  + +
Sbjct: 407  GAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLGLDDAMKAEPQ 466

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
             +E   A    D L+ +++KLE L R    HA G++I    +S   P+Y+   S  PV+ 
Sbjct: 467  IQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESASPVSM 525

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKG 616
            ++   +E  GL+KFDFLGL+ LT+++ + + +       VD+  IP DD   Y +     
Sbjct: 526  YDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIVDVGTIPLDDQLAYKIFRDAN 585

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI  +  R  G+E    IHP
Sbjct: 586  TTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQE-FQYIHP 644

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            L++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGKK  EEM K +E F  GA
Sbjct: 645  LLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIFAEGA 704

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
            +K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+K HYP EF+AA+M+ E+
Sbjct: 705  AKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAATMSSEL 764

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIME 855
            DN +++K F  D R   I+ +PP +N     F    N +I Y+L AIKG G      I+ 
Sbjct: 765  DNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMKIRYALGAIKGTGEAAVESIIA 824

Query: 856  ASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
            A      F  L DFC RV  + +NRR LE+L+  GA D    +R  LL ++D     A  
Sbjct: 825  ARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLANIDLAMNNAD- 883

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
             +K        +F   +      + L    + + S +   E+ V+GFY SGHP   Y   
Sbjct: 884  -QKAANANQGGLFDMMEDAIEP-VQLVDAPMWSESEKLAEEKTVIGFYLSGHPFGPYAQE 941

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +R++              +++RLA  V + +    ++G  I +V+  + + + E   
Sbjct: 942  VRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAFVSLEDLSGQIEIMV 994


>gi|260550635|ref|ZP_05824844.1| DNA polymerase subunit III alpha [Acinetobacter sp. RUH2624]
 gi|260406346|gb|EEW99829.1| DNA polymerase subunit III alpha [Acinetobacter sp. RUH2624]
          Length = 1186

 Score =  981 bits (2536), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1038 (36%), Positives = 582/1038 (56%), Gaps = 46/1038 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + +++     D+ PA+A+TD +NL +A++F       GI+PI
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVKAAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  +                         LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   LGSTI---------------RLNDAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + +I+L G  S  + +    ++ Q AE  L  + + FG+R+Y+ L R  
Sbjct: 108  VQKEWVLEQH-QDIIVLLGQHS-DVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTD 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     +  +LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   RPR  
Sbjct: 166  RAGEEDFIQEAAKLAAKYNIGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADDRRPRLY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ + K   EM+ +FSD+P A+ENT  IA+RC+  L++    LP +   +   I    +
Sbjct: 226  SPEQHFKTSDEMIELFSDIPSAIENTYHIAKRCNVSLKLGTYFLPEYPIPDGFTI----D 281

Query: 309  NELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE RL       +         + Y +R+D+E+ +I +M F GYFLIV D
Sbjct: 282  TYFEHLSKEGLEERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            P       AI  + + ++         +     + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLATAIEMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--GVK 595
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +      
Sbjct: 522  KITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRGNDP 581

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +++S +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP+
Sbjct: 582  LNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGPM 641

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  + +R +G +    +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L  AD+LRR
Sbjct: 642  DLIPDFIHRMHGGD-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLRR 700

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y 
Sbjct: 701  AMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAYH 760

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TAW+K HYP EF+AA M+ EM N + +     D R   ++++PPSVN     F   D++ 
Sbjct: 761  TAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYHFHASDDKT 820

Query: 836  Y-YSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
              Y L AIKGVG    + +++      P+  L DFC R+D KK+N+R LE+L+ AGALDC
Sbjct: 821  IVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDC 880

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
             G  R  L+  L    + A+    NR +   ++F   +     +   +     +  VR +
Sbjct: 881  LGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRLK 938

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+          +
Sbjct: 939  GEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVLDVANFP----N 994

Query: 1014 RIGWVTFSEPAKEYEANF 1031
            R+  V   +     E + 
Sbjct: 995  RVVIV-LDDGTARIEVSC 1011


>gi|85708817|ref|ZP_01039883.1| DNA polymerase III alpha subunit [Erythrobacter sp. NAP1]
 gi|85690351|gb|EAQ30354.1| DNA polymerase III alpha subunit [Erythrobacter sp. NAP1]
          Length = 1165

 Score =  981 bits (2536), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/1042 (43%), Positives = 636/1042 (61%), Gaps = 35/1042 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L+V SSYS+LEGA+    I         PAI+I D N L+ A+ F+    + G+QP
Sbjct: 5    PFVPLRVLSSYSMLEGAIDPKAIAKLAKERGFPAISICDRNGLYGAVMFANACKSEGVQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L +  +          +    V  + LL     GY  L  LVS+ +L    +   
Sbjct: 65   IIGTLLGVARE---------GSEGKLVDYLPLLAQDEAGYDNLCHLVSKAHLDRPLELEP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + +  L E  T+GLI LTG   G + R         A   +    KLF +RLY+ L RH
Sbjct: 116  HVVMDDL-EGHTDGLIALTGAGEGALTRLLAEGQVDTATTFVERLDKLFVNRLYIELARH 174

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                  R E  ++++AY   LPLVATN + F     ++AHD ++ +A+ST +  +DRPR 
Sbjct: 175  GDPVCERAEDALIEMAYNRALPLVATNPANFAEPHMHKAHDAMLCIANSTYIENEDRPRT 234

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                ++K+ + M  +F+DLPEA  NT+ IA+RC++      PILP           + E 
Sbjct: 235  NHAAFVKSSNMMEELFADLPEATANTLVIAQRCAYAPPYRDPILPSLAGD-----LEGEA 289

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L  ++ AGLE RL+          + Y  RLD+E+++I  M F GYFLIVADFIQWAK
Sbjct: 290  KMLAEQSKAGLEERLSSYEDLSEEDRKVYFDRLDYEIDIIVGMGFPGYFLIVADFIQWAK 349

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               IPVGPGRGSGAGS+ A+ALTITD+DP++  LLFERFLNP+R+SMPDFDIDFC+ RR 
Sbjct: 350  DQGIPVGPGRGSGAGSIVAWALTITDLDPIQLGLLFERFLNPERVSMPDFDIDFCETRRG 409

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVIRYVQ KYGH+ VAQIITFG ++A+A LRD GR LQM Y QVDRLCK++PN P  P +
Sbjct: 410  EVIRYVQKKYGHDHVAQIITFGKMKARAVLRDCGRILQMSYGQVDRLCKMVPNHPTDPWT 469

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L +A+   + F++    D  V RL++++ +LEGL R++STHAAG+VIGDRPL+QLVP+YR
Sbjct: 470  LPRALNGAADFKKEYDNDNEVKRLVDLALQLEGLPRNSSTHAAGVVIGDRPLAQLVPLYR 529

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D RSD+PVTQ++MK +E +GL+KFDFLGLKTL++L+K++D LA RG+++DL  +P DD  
Sbjct: 530  DPRSDMPVTQYDMKNVESSGLVKFDFLGLKTLSVLRKAVDLLAMRGIEIDLGALPLDDTA 589

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             Y L+    T+G+FQLES GMR+ L+ ++P    DIIALVSLYRPGP+DNI ++  RK G
Sbjct: 590  VYDLMQMGNTVGVFQLESEGMRRTLKAVKPSNFGDIIALVSLYRPGPMDNIPLFGQRKAG 649

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +  I   HP ++ +L ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKK++ EMD 
Sbjct: 650  EVAIEYPHPKLEGILAETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKVQAEMDI 709

Query: 728  QKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            Q+ RF+ G    +GI    A  +F+L+ KFA YGFNKSHAAAYA+++YQTAWMK HYP E
Sbjct: 710  QRGRFVEGCKDVSGIEAKQANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWMKAHYPEE 769

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQF--------NIQIMPPSVNTPCVDFKVGD----NR 834
            F AASM  ++   EK+  F  DAR++         ++++PP VN     F V        
Sbjct: 770  FYAASMCFDLHQSEKLNIFVDDARRYPAERANGSGVEVLPPDVNHSEARFTVEQTDDGYA 829

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            + Y+LA I+ VG      I+ E  +  PF+SL+D   R+    +NRR LE L+ AGALD 
Sbjct: 830  VRYALAGIRNVGEKAMEAIVAERRSKGPFESLKDLFERMPHGAMNRRQLEGLICAGALDG 889

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R +L  + D +   A    + R++    +F  +     D + L+     +   +  
Sbjct: 890  LYPNRGELFANADLLLATADAAARERSSGQGGLFGGDNAPQED-LRLQPAESWSRPDQMA 948

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRGNN-IRLAAMVVSKQQKKTR 1010
             E+   GFYFS HP+  Y+ +    G + Y+  +      G     +AAMV S  + +T+
Sbjct: 949  KERENFGFYFSAHPVQQYREVASAQGARTYQSLMDGGAPAGRQTAVIAAMVESAGKGRTK 1008

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G+      FS+ + ++ A  F
Sbjct: 1009 RGAEFVRGQFSDSSGQFSAACF 1030


>gi|312888892|ref|ZP_07748454.1| DNA polymerase III, alpha subunit [Mucilaginibacter paludis DSM
            18603]
 gi|311298633|gb|EFQ75740.1| DNA polymerase III, alpha subunit [Mucilaginibacter paludis DSM
            18603]
          Length = 1195

 Score =  981 bits (2535), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1074 (33%), Positives = 568/1074 (52%), Gaps = 62/1074 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VH+ +SLL+GA  ++ +  K AAD   A+AITD  N+F   +F  +A    ++
Sbjct: 2    PDFSHLHVHTQFSLLDGAADISKLYKKAAADGMKALAITDHGNMFGVFKFVAEAGKHNVK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+GC+  +    + K   + K         + L   AEGY+ LI+L S  Y+     + 
Sbjct: 62   PIVGCEFYVVDDRHKKQFTKEKKDVRR--HQLFLAKNAEGYKNLIKLCSLGYMEGLYSKW 119

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    + +   +GLI  +      + +A    + + AE     +  LFG+  Y+ LQR
Sbjct: 120  PRIDKELILKYH-KGLIATSCCIGASVPQAILKATEEEAETEFKWWLDLFGEDYYIELQR 178

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK---- 243
            H   ++    + +++ A  + +  + +N+S ++ ++D  AHD+L+ V    + S      
Sbjct: 179  HEIPEQTIINNTLLKYAKKYNVKTICSNDSHYVDQQDSNAHDILLCVNTGDMQSTPIATD 238

Query: 244  -------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
                            Y K ++EM  +F D+PE+L+NT EI  +   +      +LP F 
Sbjct: 239  EEGGKGYRFGFPNDQFYFKTQAEMGQLFHDIPESLDNTNEIVDKVDVLKLKRDIMLPNFP 298

Query: 297  EKECDDIQKEEEN-------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                  I    E+        L++    G + R    ++       +  +R++FEL  I 
Sbjct: 299  IPPEFAIHTGPESDTLNQWEYLKHLTFTGAKERYIDISL-------ETEERINFELFTIR 351

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M F+GYFLIVADFI+  +   + +GPGRGS AGSV AY   IT+IDP++++LLFERFLN
Sbjct: 352  TMGFAGYFLIVADFIKHGRDIGVFIGPGRGSAAGSVVAYCTGITNIDPMKYNLLFERFLN 411

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            PDR SMPD D DF  + R +VI YV  KYG  +VAQIIT+GS+ A+ +++DVGR L MP 
Sbjct: 412  PDRKSMPDIDTDFDDEGRQKVIDYVVEKYGKNQVAQIITYGSMAARTSIQDVGRVLDMPL 471

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            S+V+ + KL+P+     +   AI      +     +    ++L  ++KLEG  R+   HA
Sbjct: 472  SEVNLMKKLVPDTLGITLK-DAIEQVPELKAILEGNDLRSQVLRAAEKLEGSVRNTGVHA 530

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            AGI+I    L+ +VP+     SDL VTQ++ + IE AG+IK DFLGLKTLT+++ +L  +
Sbjct: 531  AGIIIAPDDLTNIVPVAVAKDSDLLVTQYDGRVIEDAGVIKMDFLGLKTLTIIKGALRMI 590

Query: 590  AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q    ++D+  I  DD +TY L     T G FQ ES GM+  L  ++PD  ED+IA+ +
Sbjct: 591  KQNHGREIDIDYIDLDDQKTYELYQRGDTNGTFQFESDGMQMYLRDLKPDKFEDLIAMNA 650

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGPI+ I  +  RK+G E I    P ++  L ET G+ +YQEQVM ++Q L+G+S  
Sbjct: 651  LYRPGPIEYIPNFIKRKHGLEPITYDLPDMEEYLAETYGITVYQEQVMLLSQKLAGFSKG 710

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            +ADVLR+AMGKK  E ++K + +F+SGA+  G  K     I+     FA Y FNKSH+  
Sbjct: 711  DADVLRKAMGKKQIEILNKMEAQFVSGATAKGHPKDKLTKIWNDWKAFAQYAFNKSHSTC 770

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+++YQTA++K HYP E++A+ +    +N+EKI  F ++ R+    ++ P VN   V F
Sbjct: 771  YALVAYQTAYLKAHYPSEYMASVLN-NQNNMEKISFFMEECRRMGTLVLGPDVNESSVLF 829

Query: 829  KV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
               G+  I + L+ IKGVG      I+E    +  F S+ +F  R ++K +NR+  E++V
Sbjct: 830  TATGNGNIRFGLSGIKGVGDKAVESIIEERDKNGAFTSVYEFAQRSNTKAVNRKSYENMV 889

Query: 887  FAGALDCFGYSRMQLLQ--------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            ++GA D FG+ R Q            ++ + KYA   +  + +   ++F     ++  + 
Sbjct: 890  YSGAFDSFGFKRAQFFAKTENGVLSGIERLTKYANDYQNTQNSSQSSLFGGSVASYIPEP 949

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-----VATIRG- 992
            T+ +        + + E+ V+G Y +GHPLD YK  L +       +      +    G 
Sbjct: 950  TMPEAEEFPLIEKLKYEKEVIGIYLTGHPLDNYKIELERFCKHTVADLKLIQRMKNKEGG 1009

Query: 993  --------------NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                          + + +  ++ S Q K T+ G   G   F +    YE   F
Sbjct: 1010 EETEIAFNNLRRTASELSIGGLLSSVQHKTTKTGKPFGTFVFEDYFDSYEFALF 1063


>gi|228987852|ref|ZP_04147961.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            tochigiensis BGSC 4Y1]
 gi|228771900|gb|EEM20357.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            tochigiensis BGSC 4Y1]
          Length = 1105

 Score =  981 bits (2535), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1025 (36%), Positives = 584/1025 (56%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PIIG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++  K              +VLL     GYQ L+++ S +      K    I 
Sbjct: 62   LTASIFSEEEEK-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEGIP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    +    AE+    ++ +F    Y++LQ H   
Sbjct: 107  KKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMF-GNFYMSLQHHAIQ 164

Query: 193  DRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  D
Sbjct: 165  DELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 252  HY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             Y LK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F     +      +  
Sbjct: 225  QYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVPANE----TNDTY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK-D 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 453  AYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    
Sbjct: 812  VTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA               A + G    K    +    +   +   E+ VLGFY S +P  
Sbjct: 872  EYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|281421262|ref|ZP_06252261.1| DNA polymerase III, alpha subunit [Prevotella copri DSM 18205]
 gi|281404797|gb|EFB35477.1| DNA polymerase III, alpha subunit [Prevotella copri DSM 18205]
          Length = 1236

 Score =  981 bits (2535), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1117 (32%), Positives = 552/1117 (49%), Gaps = 104/1117 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62
             FVHL VH+ YS+L+G   + +++DK   D    +A+TD   +F   E +          
Sbjct: 3    DFVHLHVHTQYSILDGQSKIPHLVDKAIKDGMKGMAVTDHGVMFGIKELTDYCGKINKDR 62

Query: 63   CAAGI---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
               G+   +PIIGC++ +      K   +      +   +++L     GY+ LI+LVS  
Sbjct: 63   KKEGLEPFKPIIGCEMYVAR--RTKADREKDKGDMSGYHLIVLAKNYNGYKNLIKLVSNS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++ D      R   + L++   E LI+ +   +G +         + A +    +  LFG
Sbjct: 121  WV-DGYYMRPRTDRADLEKYH-EDLIVCSACIAGEVPSKILHGDLEGAREACQWYHNLFG 178

Query: 180  DRLYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
            D  Y+ LQRH+  D              +    +++++A    + LV TN+  F  +E  
Sbjct: 179  DDYYLELQRHKVPDDPSLLANREAYELQQRANKELIKMAREFNIKLVCTNDCHFEDKETA 238

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            EAHD L+ +A    +   +R R +   + K R EM  +FSD+PEAL NT+E+  +     
Sbjct: 239  EAHDHLLCIATGKDLDDPNRMRYSKQEWFKTRQEMNEVFSDIPEALSNTLEVLDKVEIYS 298

Query: 286  QVHAPILPRFIEKE-------------CDDIQKE-------------------------- 306
              H PI+P F   E              +D+ KE                          
Sbjct: 299  IDHGPIMPFFPIPESFGTEEQLRQKVSEEDLYKEFTSDENGKNPLPPEEGQKVIDRLGGY 358

Query: 307  --------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                    E   LR+ A  G +              +D  + ++FEL+V+  M F GYFL
Sbjct: 359  DKIYRIKFEAEYLRHLAYEGAKKLYGDPL------PEDVDEHVNFELHVMKTMGFPGYFL 412

Query: 359  IVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            IV+DFI+ A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD
Sbjct: 413  IVSDFIRAAREELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPD 472

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D DF  D R +V+R+V +KYGHE  A IIT+GS+  K +++DV R  ++P  + + LCK
Sbjct: 473  IDTDFDDDGRGKVLRWVMDKYGHENCAHIITYGSMATKNSIKDVARVEKLPLDKANALCK 532

Query: 478  LIPN---DPAHPVSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIV 533
             IP+   D A      AI      REA  + DP     ++ ++ LEG  R    HA G +
Sbjct: 533  AIPDRLPDGAKMNLTNAIKYTPELREAEFSNDPRESNTIKYAKMLEGTIRGTGIHACGFI 592

Query: 534  IGDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            I   P+S  VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ ++++   
Sbjct: 593  ICRDPISNWVPVSTADDPDFPGLKTAVTQYDGHVIETTGLIKMDFLGLKTLSEMKEACKV 652

Query: 589  LAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + Q     VDL  IP DD  TY L     T+G FQ ES GM++ L  ++P   ED+IA+ 
Sbjct: 653  IKQTTGDVVDLDTIPIDDELTYQLYQRGQTIGTFQFESPGMQKYLRELKPTVFEDLIAMN 712

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +LYRPGP+D I  +  RKNGK+ I    P ++  LK+T G+ +YQEQVM +++ L+ ++ 
Sbjct: 713  ALYRPGPMDYIPDFIARKNGKQAITYDIPCMEKYLKDTYGITVYQEQVMLLSRQLASFTR 772

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             E+D LR+AMGKK K  +D  K +FI    +NG    +   I+    KFA Y FNKSHA 
Sbjct: 773  GESDALRKAMGKKKKAIVDAMKPKFIKQGQENGHDPKVLEKIWGDWEKFASYAFNKSHAT 832

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
             Y+ ++YQTA++K HYP E++AA MT     + +I K  ++ +   I+ + P VN     
Sbjct: 833  CYSWVAYQTAYLKAHYPAEYMAALMTRRFAQITEITKLMEECQSMGIKTLGPDVNESYRV 892

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V     I + L+AIKG+G   A  I+     + P+ S+ DF  RVD   +NR+  E+L
Sbjct: 893  FGVNEHGEIRFGLSAIKGMGAPAADAIVAERLKNGPYKSIFDFAERVDYSSVNRKAFETL 952

Query: 886  VFAGALDCFGYSRMQLLQ-------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
              +G  D FG  R Q           LD + +Y Q  ++ +     ++F   +       
Sbjct: 953  ALSGGFDSFGIRREQFFGKNNKGETFLDTLVRYGQLFQQEQHEAANSLFGGTEAIEIATP 1012

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNI 995
             +      ++  R   E+ ++G Y S HPLD Y  IL  +      E        +  ++
Sbjct: 1013 PIPDAESWSTIERLNRERELVGIYLSAHPLDEYSIILNSLCNTHCSELGDKQELAKKEDV 1072

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             L  ++   + K T+ G   G+VT  +     E   F
Sbjct: 1073 VLGGIITGVKSKFTKTGKPCGFVTLEDFEGSGELALF 1109


>gi|255348923|ref|ZP_05380930.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 70]
 gi|255503463|ref|ZP_05381853.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 70s]
 gi|255507141|ref|ZP_05382780.1| DNA polymerase III subunit alpha [Chlamydia trachomatis D(s)2923]
 gi|289525590|emb|CBJ15068.1| DNA polymerase III alpha subunit [Chlamydia trachomatis Sweden2]
 gi|296435150|gb|ADH17328.1| DNA polymerase III subunit alpha [Chlamydia trachomatis E/150]
 gi|296438870|gb|ADH21023.1| DNA polymerase III subunit alpha [Chlamydia trachomatis E/11023]
          Length = 1237

 Score =  981 bits (2535), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1076 (34%), Positives = 576/1076 (53%), Gaps = 60/1076 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+   + K    Q PA+A+TD  NLF A+EF +      I+P
Sbjct: 2    TWIPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +          + K+       ++LL    EGY+ L  L S  Y         
Sbjct: 62   IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYTEG-FYYVP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q H
Sbjct: 119  RIDRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLH 176

Query: 190  RGYDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +  +                            V+  +    +P VATN+  +L+ +D+ A
Sbjct: 177  KSSEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLA 236

Query: 228  HDVLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+          A  ++ + + K +   + + Y K+  E+  +F+  PE + NT  +
Sbjct: 237  HEILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEIAELFAAHPETITNTCIV 296

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---G 326
            A RC   L       P ++ +         E E        L      GL  +      G
Sbjct: 297  AERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLG 356

Query: 327  AIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
             IAK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSGA
Sbjct: 357  HIAKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGA 416

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + 
Sbjct: 417  GSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDN 476

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            VAQIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S  A+  D   R+  
Sbjct: 477  VAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELRQLY 534

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
            + D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK 
Sbjct: 535  VDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKP 594

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            +E  G++K DFLGLKTLT +  +   +  + G+ +  + IP DD  T+ LL    T+GIF
Sbjct: 595  VESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIF 654

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            Q+ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P+
Sbjct: 655  QMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPI 714

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NGI
Sbjct: 715  LKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGI 774

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
              +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK
Sbjct: 775  DPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEK 834

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK 860
            + K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    + 
Sbjct: 835  VGKLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKNG 894

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            P+ SL+DF  R D KK+ ++ LE+LV AG  DCF  ++   L  L+++       +K   
Sbjct: 895  PYKSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEAA 954

Query: 921  NKHENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                  F+ +          ++ E     +     + E+ +LG Y + HP+D  + +L  
Sbjct: 955  TGVLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPF 1014

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032
            + +    +      G  IR   ++     K  + +  +   +  S+    YE   +
Sbjct: 1015 LSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070


>gi|289642708|ref|ZP_06474847.1| DNA polymerase III, alpha subunit [Frankia symbiont of Datisca
            glomerata]
 gi|289507451|gb|EFD28411.1| DNA polymerase III, alpha subunit [Frankia symbiont of Datisca
            glomerata]
          Length = 1187

 Score =  980 bits (2534), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/1077 (31%), Positives = 566/1077 (52%), Gaps = 60/1077 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  SFVHL VH+ YS+L+GA  +  +  + A    PA+ +TD  N+F + EF Q A  
Sbjct: 1    MSKGDSFVHLHVHTEYSMLDGAAKVGLLFAEAARLGMPAVGMTDHGNMFGSYEFHQAAKK 60

Query: 65   AGIQPIIGCQLDIDMQDN------LKMTNQGKTPFPT-----------VPSIVLLVSTAE 107
            AG++PIIG +  +  +               +   P               + +L + ++
Sbjct: 61   AGVKPIIGIEAYVAPEARHHKKPVFWGDGGQRDADPDGEGGDVSGGGAYTHMTMLAANSK 120

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G + L  L S   L D   +  R+    + E   EG+I  TG  SG +      N    A
Sbjct: 121  GLRNLFRLSSIASL-DGYYRKPRMDQELIAE-HAEGIIATTGCPSGVVQTRLRLNQFDRA 178

Query: 168  EKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
             +   T++ +F  +  ++ L  H    +R     ++ +A   +L  +ATN+S +++++  
Sbjct: 179  VEAAATYRDIFGPENYFLELMDHGLAIERKVRDGLLDIARRLDLRPLATNDSHYVTKDQA 238

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFS-DLPEALENTVEIARRCSF 283
            ++H  L+ V     +    R R   D +YLK+  EM  ++   +P A ++++ IA R   
Sbjct: 239  DSHSALLCVGTGKRLDDPKRFRFDGDGYYLKSPEEMRDMWDGQVPGACDSSLLIAERVQP 298

Query: 284  ILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
               V A +  +PRF   E +D    + + LR +   G+E R            Q+   R+
Sbjct: 299  YDDVFAYVDRMPRFPVPEGED----QLSWLRKEVARGVEHRFG------ANPPQEVLDRV 348

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            ++E+ VIA M F  YFL+VAD  ++A++  I VGPGRGS  GS+ +Y L +T++DP+   
Sbjct: 349  EYEIGVIANMGFPAYFLVVADICRYAREKGIRVGPGRGSATGSMVSYVLGVTELDPIEHR 408

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            L+FERFLNP+R++ PD D+DF + RR ++IRYV  +YG +RV QI+TFG+++AKAA++D 
Sbjct: 409  LIFERFLNPERITPPDIDLDFDERRRGDMIRYVTERYGEDRVCQILTFGTIKAKAAIKDS 468

Query: 462  GRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDS--------RFREARLADPSVDRLL 512
             R L  PY+  D++ K +P D     + L  I D +          R    +D  V +++
Sbjct: 469  CRVLGYPYALGDKITKAMPPDVFGKGIPLSGILDPAHERYSEAAEVRGLYESDQDVRKIV 528

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            + ++ LEGL R    HAAG+++   PL  ++P++R       +T F     E  GL+K D
Sbjct: 529  DTARGLEGLTRGTGVHAAGVILCSEPLLDVLPIHRRDADGAIITGFPFPQCEDMGLLKMD 588

Query: 573  FLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGL+ LT++  ++  + + RG+ +DL  +P  D  T+ L+    TLG+FQL+   MR  
Sbjct: 589  FLGLRNLTVIDDAIINVRKNRGIDIDLQKLPLADTPTFQLMARGDTLGVFQLDGGPMRSL 648

Query: 632  LEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKET 685
            L  M P   EDI A+++LYRPGP+  ++ + Y +RKNG++ +  IH  +    + +L ET
Sbjct: 649  LRLMAPTKFEDIAAVLALYRPGPMAANSHIEYADRKNGRKPVTPIHTELKDRLEDILGET 708

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
              +++YQEQVM IA+ L+GY+L  AD+LRRAMGKK KE +D     F++G ++N  S   
Sbjct: 709  YHLVVYQEQVMTIARELAGYTLGRADLLRRAMGKKKKEVLDANHAEFMAGMAENSYSTEA 768

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A  ++++L  F+ YGFNKSH A Y V+S+ TA++K ++P E++AA +T   D+ +K+  +
Sbjct: 769  AQALWDVLVPFSGYGFNKSHTAGYGVVSFWTAYLKANFPAEYMAALLTSVGDDKDKMAVY 828

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDS 864
              + R+  I+++PP VN   + F   D+ I + L AI+ VG      I  +      + S
Sbjct: 829  LAECRKMGIRVLPPDVNESTLYFTPVDDDIRFGLGAIRNVGANVVASIAASRERKGDYAS 888

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              DF  +V+    N+RV++SL+ AGA D  G++R  L Q  ++        ++N      
Sbjct: 889  FPDFLEKVEIAVCNKRVVDSLIKAGAFDSLGHNRRALSQVHESAIDAVIGTKRNEAFGQF 948

Query: 925  NIFAHEKGTFSDK-----ITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
            ++F        D+     + L+   +    S     E+ +LG Y S HPL+  + IL + 
Sbjct: 949  DLFGGGGDDEPDESMKIGLGLDLSATEWPRSELLAQEREMLGLYVSSHPLEGTQRILDRN 1008

Query: 979  GIKGYEESVATIRGN-NIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANFFP 1033
                  + + + R    +++A ++    ++  +  G+    VT  +     E  FFP
Sbjct: 1009 RDTRIIDLLDSGRSEGEVQIAGVIAKIDRRVNKNNGNLWAIVTVEDLDASVEVLFFP 1065


>gi|238020460|ref|ZP_04600886.1| hypothetical protein GCWU000324_00342 [Kingella oralis ATCC 51147]
 gi|237867440|gb|EEP68446.1| hypothetical protein GCWU000324_00342 [Kingella oralis ATCC 51147]
          Length = 1156

 Score =  980 bits (2534), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1032 (38%), Positives = 581/1032 (56%), Gaps = 33/1032 (3%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L+ HS +S+ +  + +++ +    A+  PA+A+TD  N F  L+F +    AGI+PI 
Sbjct: 4    IPLRAHSEFSITDSIIRISDYVAAARAENYPALALTDLMNTFGLLKFYKACRKAGIKPIC 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY-LLDQGKQSVR 130
            G  + I+  +  +  ++           VLL+   +GY RL EL++  +   D+ K + +
Sbjct: 64   GADVRIENPEQPEKPHRA----------VLLIRNEQGYIRLNELLTAAFEADDRNKHTPQ 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            I  +WL +    GL+ L+G   G +       +   A      +   F +  Y+ LQR  
Sbjct: 114  INQAWLAQGDNSGLLCLSGAQMGEVGSHLMLGNEDKAHAAAQKYAAWFPNAFYLELQRLP 173

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             +       S  +++A   +LP+VAT+ + FL  EDY+AHD  + +A    +    RP  
Sbjct: 174  EKPDWEISVSGSLKIAQALQLPVVATHPTQFLQREDYKAHDARVCIAGGWTLIDPKRPHD 233

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             TP  +     E  + F+D+PEAL N+ EIA+RC+  L +    LP F   +  D+    
Sbjct: 234  FTPGQHFLTPDEFAARFADIPEALANSQEIAKRCNLTLTLGKNFLPLFPTPDGMDLN--- 290

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             + LR+ A  GL+ RLA        +     +Y+ RLDFEL++I +M+F GYFLIV DFI
Sbjct: 291  -DYLRHLANEGLQERLAVLYPNEAERAQRQPEYQARLDFELDIIIKMQFPGYFLIVQDFI 349

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAK N  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 350  NWAKNNGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDIDFCQ 409

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
              R  VI YV+ KYG + V+QI+TFG++ +KA +RDVGR LQ+P++  DRL KLIP +  
Sbjct: 410  ANRGRVIEYVREKYGKQAVSQIVTFGAMSSKAVIRDVGRVLQLPFALCDRLSKLIPLEAN 469

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             P+ L+         E  + +   D LL ++ KLE L R+   HA G++I    +S    
Sbjct: 470  KPLHLKDALAAEPEIEQIIREEEADELLNLAMKLEDLTRNLGMHAGGVLIAPSKISDFCG 529

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +Y+   +  PV+ F+   +E+ GL+KFDFLGL+ LT+++ + +F+ Q     VD+S IP 
Sbjct: 530  VYQADENASPVSMFDKGDVEEIGLVKFDFLGLRNLTIIEMAQNFIRQTTGEHVDVSHIPL 589

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD   Y +     T  +FQ ESSGM++ L       +E+IIA VSLYRPGP+D I  +  
Sbjct: 590  DDQVAYKIFRDANTTAVFQFESSGMKKMLAQANTTNLEEIIAFVSLYRPGPMDLIPDFIE 649

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R  G  K   +HPL++P+L+ T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGKK  E
Sbjct: 650  RMKG-AKFEYMHPLLEPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAMGKKKPE 708

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM K +E F  GA+K GIS+  A  IF+ + KFA YGFNKSHAAAYA +SYQTAW+K HY
Sbjct: 709  EMVKHREIFAEGAAKQGISREKADEIFDYMEKFAGYGFNKSHAAAYAYVSYQTAWLKAHY 768

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDA--RQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLA 840
            P EF+AA+M+ E+DN +++K F  DA  +   I+ +PP VN     F     + I Y+L 
Sbjct: 769  PAEFMAATMSSELDNTDQLKVFFDDAQSKLNGIRFLPPDVNESFYRFIPNAQKQIRYALG 828

Query: 841  AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AIKG G      I+ A      F  L DFC RV  +  NRRVLE+L+  GA D    +R 
Sbjct: 829  AIKGTGEAAVNAIVAARESGGKFTDLFDFCERVGKQHANRRVLEALIRGGAFDSIEPNRA 888

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
             LL ++D     AQ  +K        +F   +   +D + L+     N + +   E++ +
Sbjct: 889  MLLGNIDLAI--AQAEQKADNANQGGLFDMVEDALAD-VPLQYIEPWNEATKLAEEKQAI 945

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GFY SGHP   Y   +R           A   G   RLA    S +   T+ G  I  + 
Sbjct: 946  GFYLSGHPFAPYASEVRAFAPTPLGSLKA-KDGTQ-RLAGFATSIRSIMTKNGKMIAVL- 1002

Query: 1020 FSEPAKEYEANF 1031
              +   + E   
Sbjct: 1003 LEDDTAKQEVII 1014


>gi|326801307|ref|YP_004319126.1| DNA polymerase III subunit alpha [Sphingobacterium sp. 21]
 gi|326552071|gb|ADZ80456.1| DNA polymerase III, alpha subunit [Sphingobacterium sp. 21]
          Length = 1493

 Score =  980 bits (2534), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/1120 (31%), Positives = 566/1120 (50%), Gaps = 109/1120 (9%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------SQ 60
            K   +VHL  H+ +S+L+  +S+ +++   A  + PA+AITD  N+  A  F        
Sbjct: 256  KEVDYVHLHNHTQFSILQSTISVADLVKAAAKHRMPAVAITDHANMMGAFHFVSNVLNHN 315

Query: 61   KACAAG---------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
            KA  A                I+PI+GC+  +         +  KT       IV+L   
Sbjct: 316  KAAEAKNKTAVENGEEPSEVIIKPIVGCEFFVCDN------HADKTRKDNGYQIVMLAKN 369

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
              GY  L ++ S  Y  D      RI    +++   E +I+L+G   G I          
Sbjct: 370  KAGYHNLAKMSSLAYT-DGFYYVPRIDRKIIEQY-KENIIVLSGNLYGEIPNKLLNMGEN 427

Query: 166  VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEED 224
             AE+ L+ +K+ FG+  Y+ L RH   D  R  + +V+LA  H + L+ATNN+ ++++ED
Sbjct: 428  QAEEALIWWKETFGEDFYIELMRHGQEDENRINASLVELARKHGVKLIATNNTYYINKED 487

Query: 225  YEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
              +HD+L+ V  +  ++                ++Y K+  EM  +F+D+PEA+ N  EI
Sbjct: 488  AHSHDILLCVRDAEKLATPKGRGRGFRYGLPNEEYYFKSGEEMKKLFTDIPEAIANIQEI 547

Query: 278  ARRCSFILQVHAPILPRFIEKE--------CDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
              +          +LP+F   E         D  ++ E   LR+    G   R ++    
Sbjct: 548  VDKVEVYSLYRNVLLPKFDIPEEFQVTEDQLDGGKRGENKYLRHLTYVGAAKRYSE---- 603

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                  + R+RLDFEL  I +  + GYFLIV DFI  A++  + VGPGRGS AGS  AY 
Sbjct: 604  ---ITPEIRERLDFELQTIEKTGYPGYFLIVQDFIAAAREIGVSVGPGRGSAAGSAVAYC 660

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L IT+IDP+ + LLFERFLNPDR+SMPD DIDF  + R  V+ YV NKYG  +VAQIIT+
Sbjct: 661  LGITNIDPIAYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGANQVAQIITY 720

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV------------SLQAIADDSR 497
            G++ AK+++RD  R L +P  + D++ KL+PN   + +              + +     
Sbjct: 721  GTMAAKSSIRDTARVLDLPLFEADKIAKLVPNLKLNKLFNMDAQALKSALRTEELESVRE 780

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
                   +      +  ++ LEG  R+   HA G++I    ++  VP+     S+L VTQ
Sbjct: 781  LINLANGNDLGAETIRQAKALEGSVRNTGIHACGVIITPDDITNFVPVSTAKDSELYVTQ 840

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKG 616
            F+   +E AGL+K DFLGLKTLTL++ ++  +   +G++++    P DD +TY L     
Sbjct: 841  FDNSVVESAGLLKMDFLGLKTLTLIKDTVSLVKHTKGIELNPDFFPIDDVKTYELFQRGE 900

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            T+GIFQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RKNG+E I     
Sbjct: 901  TVGIFQYESPGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFIRRKNGEEPITYDLE 960

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
              +  LKET G+ +YQEQVM ++Q L+G++  EADVLR+AMGKK ++ +DK K +F+  A
Sbjct: 961  ACEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQRDVLDKMKPKFVQQA 1020

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
            ++ G  + +   I++    FA Y FNKSH+  YA ++YQTA++K HYP E++AA ++  M
Sbjct: 1021 AEKGHDEKVLEKIWKDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMAAVLSNNM 1080

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIME 855
            +++++I  F ++ ++  + ++ P VN     F V     I + + A+KGVG      I+ 
Sbjct: 1081 NDIKQISFFMEECKRMGLTVLGPDVNESFYKFTVNDQGAIRFGIGAVKGVGAGAVDTIVS 1140

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS--------LDN 907
               +  + S+ DF  R + + +N++V ESLV++GA DCFG +R Q            ++ 
Sbjct: 1141 NRDEGKYLSIADFARRSNPRTINKKVYESLVYSGAFDCFGINRAQFFHVPEGLSQNGIER 1200

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + KY    + N+ N   ++F         + +L          +   E+ V+  Y +GHP
Sbjct: 1201 LIKYTNDYQYNKNNAAMSLFGGTSDADIPEPSLPPCPEWGLMEKLRYEKNVVSMYITGHP 1260

Query: 968  LDVYKPILRKMGIKGYEESV-----------------------------------ATIRG 992
            +D Y+  L         +                                     A I+ 
Sbjct: 1261 MDDYRLELEYFCQHKVSQLHLIDKMKAGAGKDADNGQDAGLESPEEGVEDVKTEFAKIKN 1320

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++ +  MV +     T+ G   G +TF + +  YE   F
Sbjct: 1321 KDLVVGGMVTAVYHGMTKTGKPYGRMTFEDYSDSYEMALF 1360


>gi|73666820|ref|YP_302836.1| DNA polymerase III alpha subunit [Ehrlichia canis str. Jake]
 gi|72393961|gb|AAZ68238.1| DNA polymerase III, alpha subunit [Ehrlichia canis str. Jake]
          Length = 1123

 Score =  980 bits (2534), Expect = 0.0,   Method: Composition-based stats.
 Identities = 473/1029 (45%), Positives = 667/1029 (64%), Gaps = 44/1029 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLL G + + ++++       PA+A+TD+ NLF +LEFS  A  +GIQPI
Sbjct: 5    FVHLRSHSDYSLLHGMVKIESLVNLCVQHNMPALALTDSGNLFGSLEFSDCASNSGIQPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC + I                  +  ++LLV    GY  ++ LVS  +  DQ  +  R
Sbjct: 65   IGCNIMISYNG------------DNIGELILLVKNQVGYSNIVNLVSNSFRNDQSGKINR 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKKLFGDRLYVNLQR 188
            I L+ L  +  +G+I+LTGG  G + +    N     + +K LL FK      LYV LQR
Sbjct: 113  IDLNTLISL-KDGIIVLTGGHDGFLAQLLLGNVIDYGIIDKLLLAFK----GNLYVELQR 167

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    E  +++ AY  ++PLVATN+ LF   ED+ AHDVL  ++    ++Q+DR  
Sbjct: 168  HNIEEEKLIERTLIKFAYEKDVPLVATNDILFARREDFLAHDVLSCISDGNYIAQEDRKM 227

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T +HY K+ +EM  +F D+PEA+ NTV IA+RCSF+ ++  P+LP F         + E
Sbjct: 228  FTEEHYFKSSNEMHELFVDIPEAISNTVLIAQRCSFMPEIRKPMLPHFPCSSG----RNE 283

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL ++A+ GL  RL    ++K   ++ Y +RL +EL++I  M ++GYFLIV+DFI W+
Sbjct: 284  SQELISQAIDGLNSRLKDSNLSKEQTSKYY-ERLHYELDIIISMDYAGYFLIVSDFICWS 342

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ+ R
Sbjct: 343  KRNDIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQEGR 402

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV+ KYG   VA IITFG LQAKA LRDVGR +QMPY QVDR+CK+IP++P  PV
Sbjct: 403  DHVIEYVRKKYG--YVAHIITFGKLQAKAVLRDVGRVMQMPYFQVDRICKMIPHNPVRPV 460

Query: 488  SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L +AI  D   ++ R  D +V +LLEIS KLEGLYRH S HAAGIVI DR L +L+P+Y
Sbjct: 461  TLSEAIEMDKNLQKERDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRRLEELLPLY 520

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ +    +   G  VD+S IP +D 
Sbjct: 521  YDNVSFLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICHLVNNGGQNVDISRIPLNDK 580

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L+   ++G+FQLESSGMR+ +  ++PD I DIIAL+SLYRPGP+DNI +Y  RK+
Sbjct: 581  KTYEMLSAGDSVGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNISIYIARKH 640

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G EK   IHP+++ +LKET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKEEMD
Sbjct: 641  GFEKPDYIHPILEGVLKETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKEEMD 700

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+  FISGA  NGI +  A  IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y +E
Sbjct: 701  NQRRAFISGAINNGIEEEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANYTLE 760

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGV 845
            F  ASM L++ + +K++  C  A+   I+I+PP +NT  V F + G + I Y+L A+K V
Sbjct: 761  FFTASMNLDITDKDKLEMLCHQAKLHGIKILPPDINTSKVFFTIEGSSSIRYALGALKNV 820

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G  +A+ I++   D  +  + DF  RV +K +++R+LES++ AG LD    +R QL +S+
Sbjct: 821  GQHSAKEIVD---DIAYKDIWDFIDRVSTKCVHKRILESIIKAGVLDSIHSNRKQLFESV 877

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
                   ++ + N      ++F     T      L +        + +NE   +GFY + 
Sbjct: 878  FLFLDIIEYNKYNANFNQFSLF-----TDRAHYKLSETDDWTKEEKLDNEFSSIGFYLNH 932

Query: 966  HPLDVYKPILRKMGI--KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            HP++ YK +L K+ I    Y++  A       R+  ++ S + + +    +   VT S+P
Sbjct: 933  HPMENYKCLLEKLNIGFINYDDRSAYNN----RIVGIISSVKVR-SASRDKFAVVTLSDP 987

Query: 1024 AKEYEANFF 1032
               +E  F+
Sbjct: 988  YNIHEIAFY 996


>gi|218264823|ref|ZP_03478511.1| hypothetical protein PRABACTJOHN_04221 [Parabacteroides johnsonii DSM
            18315]
 gi|218221765|gb|EEC94415.1| hypothetical protein PRABACTJOHN_04221 [Parabacteroides johnsonii DSM
            18315]
          Length = 1266

 Score =  980 bits (2534), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1147 (32%), Positives = 574/1147 (50%), Gaps = 134/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-------- 61
             F+HL VH+ YSLL+G  S++ ++DK   D  PAIA+TD   +F   EF  K        
Sbjct: 3    PFIHLHVHTQYSLLDGQASIDALIDKAQKDGMPAIAVTDHGVMFGIKEFFNKVSKKNGKP 62

Query: 62   -------------------------------------ACAAGIQPIIGCQLDIDMQDNLK 84
                                                       +PI GC+       N +
Sbjct: 63   LGAIKDYEKELKELKSKTELTSEEQARLEEIPAKIEEEKKKIFKPIFGCECYCAR--NGR 120

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
             +        +   +++L     GY+ LI++VS  +         RI    L++   E L
Sbjct: 121  HSKLASQNDRSGWHLIVLAKNLNGYKNLIKMVSLSWTEG-FYGRPRIDKELLEKYH-EDL 178

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-------- 196
            I+ +    G I +         AE+ +L FK LFG+  Y+ +QRH  +D           
Sbjct: 179  IICSACIGGEIPQHILNGRMDKAEESVLWFKNLFGEDYYLEIQRHETHDPNAAQDVYPHQ 238

Query: 197  ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++LA  H++ ++ATN+  F++ ED EAHD L+ ++    +   +R R T   +
Sbjct: 239  VTANKVILELARKHDIKVIATNDVHFVNAEDAEAHDRLICLSTGKDLDDPNRMRYTKQEW 298

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--------- 304
            +K  +EM ++FSD+PEAL NT+EIA +  F    H PI+P F   E    +         
Sbjct: 299  MKTTAEMNTLFSDIPEALSNTLEIADKVEFYSIDHGPIMPTFAIPEDFGTEEGYRRKFTE 358

Query: 305  --------------------------------------KEEENELRNKAVAGLEVRLAQG 326
                                                  K E + L+     G ++     
Sbjct: 359  QDLFDEFTRDENGNVVLSEEAAHDKIKKLGGYEKLYRIKLEADYLKKITYDGAKICYGDE 418

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                     + ++RL+FEL+++  M F GYFLIV DFI+ A++   + VGPGRGS AGS 
Sbjct: 419  L------NDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSA 472

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D DF  D R EV+R+V  KYG ERVA 
Sbjct: 473  VAYCLGITRIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAH 532

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN---DPAHPVSLQAIADDSRFREAR 502
            IIT+G++  K+A++DV R  ++P ++ +RL KL+P+   D        AI      +EA 
Sbjct: 533  IITYGTMATKSAIKDVARVQKLPLAESNRLAKLVPDKIPDMKKFKLKDAINYVPELKEAA 592

Query: 503  L-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQ 557
               DP     L+ +Q LEG  R+   HA G++IG   +S +VP+     +D   ++ VTQ
Sbjct: 593  TGNDPLARDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQ 652

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKG 616
            +    IE+ GLIK DFLGLKTL++++++++ +        D+  I  +D  TY L     
Sbjct: 653  YEGSVIEETGLIKMDFLGLKTLSIIKEAIENIRLTTGHELDIDHISLEDPATYKLYCDGK 712

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            T G FQ ES+GM++ L+ +QP   ED+IA+ +LYRPGP+D I  +  RK GKE+I    P
Sbjct: 713  TTGTFQFESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIP 772

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+ E+M+  K +F++G 
Sbjct: 773  VMERYLKDTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGG 832

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
              NG  +     I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA ++  +
Sbjct: 833  KTNGYKEETLQKIWSDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPSEYMAAVLSRSL 892

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIM- 854
             N+  I KF  + +   IQ++ P VN   + F V  N+   + L A+KGVG    ++I+ 
Sbjct: 893  SNIVDITKFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGEAAVQNIIE 952

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDN 907
            E   + P+  + DF  RV     N++ +ESL  AGA D FG  R Q           L+ 
Sbjct: 953  ERRKNGPYKDIFDFVERVSLTACNKKNIESLALAGAFDNFGIQREQFFAETGKGEIFLET 1012

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + +++    ++F  +      K  + K    +   R   E+ ++G Y S HP
Sbjct: 1013 LVRYGNKFQTDKSTATNSLFGGDAFIAIAKPEIPKCERWSDLERLNKEKELVGIYLSAHP 1072

Query: 968  LDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y+ IL  +   G  E        G ++    +V   ++  T+KG+  G +   +   
Sbjct: 1073 LDEYRIILTYVCNTGMAEINDKENLVGKDLLFGGIVTDFREGMTKKGNPYGIIKIEDFTG 1132

Query: 1026 EYEANFF 1032
              E   F
Sbjct: 1133 SGEIALF 1139


>gi|328554543|gb|AEB25035.1| DNA polymerase III DnaE [Bacillus amyloliquefaciens TA208]
 gi|328912947|gb|AEB64543.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens LL3]
          Length = 1112

 Score =  980 bits (2534), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1026 (37%), Positives = 598/1026 (58%), Gaps = 38/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQV S YSLL  A S+  I+ +       ++A+TD N ++ A+EF +   + GI+P
Sbjct: 2    SFVHLQVRSGYSLLNSAASVKEIVTQAKELGYSSLALTDENVMYGAIEFYKACKSHGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    I   +                 +VLL  T  GYQ L+++ S +  + +G    
Sbjct: 62   IIGLTASIYTDETELEARP----------LVLLAETNTGYQNLLKISSALQSIAKGGMK- 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
                 W++    EGLI +T G +G I+        + A +    F++LFG+ R Y+  Q 
Sbjct: 111  ---RKWMKSYH-EGLIAITPGENGYIESLLQAGEFEEAVRVAEGFRELFGEGRFYLGYQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +G++   E ++++L+   E+ + A  +  ++ +ED +A+  L A+        +     
Sbjct: 167  FKGHETLSE-EILRLSAETEIAVCAAGDVRYIKKEDQDAYRCLCAIKAGEKWEDQSGDL- 224

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             PD YL+   EM +I+   PEA++    +A++C   + +    LP F   +     K  +
Sbjct: 225  -PDLYLRPPEEMENIYMKNPEAVKAAARVAQQCQVDVSLGQTQLPSFPAPDG----KSAD 279

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L      GL +R        G   +   +RL++EL+VI RMKFS YFLIV DF+++A 
Sbjct: 280  DYLAEVCHEGLRLRF-------GTPDERAVRRLEYELDVIRRMKFSDYFLIVWDFMKYAH 332

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ AY+L ITD+DPL+ SLLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 333  EKGIVTGPGRGSAAGSLVAYSLFITDVDPLKHSLLFERFLNPERISMPDIDIDFPDTRRD 392

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YVQNKYG   VAQIITFG+L AKAALRD GR   +   + D+L +LIP+ P   + 
Sbjct: 393  EVIQYVQNKYGSMHVAQIITFGTLAAKAALRDTGRVFGISPKEADQLARLIPSKPGMTLE 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A    ++          + ++ +I++K+EGL RH STHAAG+V+   PLS++VP+  +
Sbjct: 453  -EARRQSAQLNRRLSESAVLHKVFQIARKIEGLPRHTSTHAAGVVLSKEPLSEVVPLQ-E 510

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHE 607
                + +TQ+ M  +E  GL+K DFLGL+ LTL++     +  +   K+D S I + D +
Sbjct: 511  GHDGVYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESIKTMIEKETNTKIDFSEISYQDEK 570

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL+   T GIFQLESSGMR  L+ ++P  +EDI+A+ +LYRPGP++NI ++ +RK+G
Sbjct: 571  TFSLLSNGDTTGIFQLESSGMRNVLKRLKPSRLEDIVAVNALYRPGPMENIPLFIDRKHG 630

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            + ++   H  +  +L +T GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ KK K+ +D+
Sbjct: 631  RARVEVPHEDVRNILSDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKQKDILDR 690

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I YQ A++K HYP+ F
Sbjct: 691  ERSHFVEGCLKKEYSVVTANEVYDLIVKFANYGFNRSHAVAYSMIGYQLAYLKAHYPLYF 750

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N +KI ++  +A+   +Q++PPSVN     F   +  + YSL AIK VG 
Sbjct: 751  MCGLLTSVIGNEDKISQYLHEAKGSGLQVLPPSVNKSGFPFAPENGAVRYSLRAIKNVGV 810

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +  + I +A   KPF+ L DFC RV +K +NR+ +E+L+F+GA+D F  +R  LL S+D 
Sbjct: 811  SAVKDIYKARTHKPFEDLFDFCFRVPAKSVNRKTIEALIFSGAMDEFNQNRAALLASVDV 870

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++A+    +  +    +F  E  +FS K    +        +   E+  LG YFS HP
Sbjct: 871  ALEHAELFRAD--DDQMGLFLEE--SFSIKPKYVEAEEFPLVDKLRFEKEALGVYFSSHP 926

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L  ++ +L+K G +    ++   +G  + + A++   +  +T+ G  + ++T S+   E 
Sbjct: 927  LSAFRNLLKKRGAQAIATALQMPKGQ-LSIGALLAGIKTIRTKTGQHMAFLTLSDETGEM 985

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 986  EAVVFP 991


>gi|219849373|ref|YP_002463806.1| DNA polymerase III subunit alpha [Chloroflexus aggregans DSM 9485]
 gi|219543632|gb|ACL25370.1| DNA polymerase III, alpha subunit [Chloroflexus aggregans DSM 9485]
          Length = 1260

 Score =  980 bits (2534), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1055 (33%), Positives = 533/1055 (50%), Gaps = 46/1055 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS YSLL+G  +   I+ + A     +IA+TD   L+ A+EF + A  AGI+P
Sbjct: 3    DFVHLHVHSEYSLLDGYATTKGIVQRAADLGMDSIALTDHGVLYGAMEFYEAAKKAGIRP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG +  I          +G         ++LL     GY+ L++L +R +L   GK   
Sbjct: 63   IIGVEAYIAPGSLSDPMTKGAK---NYFHLLLLAQNETGYRNLVKLTTRAHLDGMGKGVF 119

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               RI    L+    EGLI+ +   +G +           A +    ++ L   DR Y+ 
Sbjct: 120  ARPRIDRHLLETYH-EGLIVTSACVAGELLHHLKHGDRHTAVETAAYYRDLLGPDRYYIE 178

Query: 186  LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            LQ H           ++V++A    +PLVAT+++ F+  ED E    +MA+  +   ++ 
Sbjct: 179  LQLHDNTPELEPLNDELVRIARELGIPLVATSDAHFIHPEDKETQHKVMAMGMNMTYAEF 238

Query: 244  DRPRVTPDHYLK--NRSEMVSIFSDLP-EALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                   D      +   M + F     E LENT  I+  C   L+     LP F   E 
Sbjct: 239  CTRGYAMDESYHIMSGEAMWARFKRYGTEPLENTRRISDMCRLKLEFGRVQLPVFELPEG 298

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D      + LR     GL  R        G   + Y +RL++EL+VI +  F  Y LIV
Sbjct: 299  HDA----ASYLRLVCEEGLMRRF------NGQPPETYLRRLEYELDVINQTGFPDYMLIV 348

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D++++A+   IP  P RGS   S+  YAL ITD+DP++  LLFERFL+P+R+ MPD D 
Sbjct: 349  WDYVKFARSRGIPCLP-RGSAGASLVLYALGITDVDPVKNKLLFERFLSPERLEMPDIDT 407

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR E++ Y+ NKYG E VAQIIT+G+L AKAA+RD+GR L +   +VDR+ KLIP
Sbjct: 408  DFADSRRQEILDYIANKYGRENVAQIITYGTLGAKAAIRDMGRVLGLDPGEVDRVAKLIP 467

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P      QAI      ++     P +  LL  +QK+EG  R   THA G+V+   PL 
Sbjct: 468  SLPVGTTIAQAIERVPELKQIYETQPHLRELLIEAQKVEGRMRSVGTHACGVVVSRTPLE 527

Query: 541  QLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            +LVP+ R  + +   +  F    + K GL+K D LGL  L+++ ++L ++ Q    ++ L
Sbjct: 528  ELVPLQRTTKDEHALMAAFEGATLAKMGLLKMDILGLTNLSVVAEALKYIEQTTGRRMWL 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD + +  L    T  +FQLES+GM + L  +QP  +ED+ A+V+LYRPGP++ I
Sbjct: 588  DEIPLDDPKVFAALGRGETKNVFQLESAGMTRYLMQLQPTRVEDLYAMVALYRPGPLEQI 647

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             VY   K+   +I  +HP+++P+L +T GVI+YQEQ+MQ+ Q ++ Y+L +A ++ +A+ 
Sbjct: 648  PVYIQNKHNPSQIRYLHPVLEPILSDTYGVIVYQEQIMQLLQTVADYTLGQAYIVIKAIS 707

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK KE M + +  F  G  + GISK +A  ++EL+  FA Y FN+ HA  Y ++SYQTAW
Sbjct: 708  KKNKELMAENEAIFKQGCQRKGISKEVADQLWELILPFAGYSFNRPHATLYGLLSYQTAW 767

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------ 832
            +K +YPVE++ A +T     +E + K   +AR+  + ++PP VN     F +        
Sbjct: 768  LKVNYPVEYMTAVLTGAGGVIEDVTKAALEARRLGVAVLPPDVNRSHKGFTIEPLSPPLP 827

Query: 833  ------NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                    I + L AIK VG      I+ A  A  PF SLED C+RVD   LN+R LESL
Sbjct: 828  EGVKYDRGIRFGLMAIKNVGEGPVEAIIAAREAGGPFRSLEDLCARVDRHALNKRTLESL 887

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS- 944
            + AGALD    SR Q L  LD         +K R     ++F     + +    + +   
Sbjct: 888  IKAGALDSLPGSRRQKLAILDQAINAGVEAQKARDIGQSSLFDIFGESNTGSPNVARIPL 947

Query: 945  ------VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
                            E+ +LG   S  P+      +   G+           G  +   
Sbjct: 948  PIITETPAEQKEVLRWEKELLGLNLSDDPIAKALEGIDLTGVTDLGSLEEEHVGETLTFV 1007

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++   ++  T+KG  +   T  +     E   FP
Sbjct: 1008 GVLSGVRRIATKKGDSMVVATLEDMTGSIEIVVFP 1042


>gi|76789282|ref|YP_328368.1| DNA polymerase III subunit alpha [Chlamydia trachomatis A/HAR-13]
 gi|76167812|gb|AAX50820.1| DNA polymerase III alpha subunit [Chlamydia trachomatis A/HAR-13]
          Length = 1237

 Score =  980 bits (2533), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1076 (34%), Positives = 575/1076 (53%), Gaps = 60/1076 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+   + K    Q PA+A+TD  NLF A+EF +      I+P
Sbjct: 2    TWIPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +          + K+       ++LL    EGY+ L  L S  Y         
Sbjct: 62   IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYTEG-FYYVP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q H
Sbjct: 119  RIDRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLH 176

Query: 190  RGYDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +  +                            V+  +    +P VATN+  +L+ +D+ A
Sbjct: 177  KSSEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLA 236

Query: 228  HDVLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+          A  ++ + + K +   + + Y K+   M  +F+  PE + NT  +
Sbjct: 237  HEILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQGMAELFAAHPETITNTCIV 296

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---G 326
            A RC   L       P ++ +         E E        L      GL  +      G
Sbjct: 297  AERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLG 356

Query: 327  AIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
             IAK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSGA
Sbjct: 357  HIAKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGA 416

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + 
Sbjct: 417  GSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDN 476

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            VAQIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S  A+  D   R+  
Sbjct: 477  VAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELRQLY 534

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
            + D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK 
Sbjct: 535  VDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKP 594

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            +E  G++K DFLGLKTLT +  +   +  + G+ +  + IP DD  T+ LL    T+GIF
Sbjct: 595  VESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIF 654

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            Q+ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P+
Sbjct: 655  QMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPI 714

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NGI
Sbjct: 715  LKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGI 774

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
              +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK
Sbjct: 775  DPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEK 834

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK 860
            + K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    + 
Sbjct: 835  VGKLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKNG 894

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            P+ SL+DF  R D KK+ ++ LE+LV AG  DCF  ++   L  L+++       +K   
Sbjct: 895  PYKSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEAA 954

Query: 921  NKHENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                  F+ +          ++ E     +     + E+ +LG Y + HP+D  + +L  
Sbjct: 955  TGVLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPF 1014

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032
            + +    +      G  IR   ++     K  + +  +   +  S+    YE   +
Sbjct: 1015 LSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070


>gi|308174617|ref|YP_003921322.1| DNA polymerase III subunit alpha [Bacillus amyloliquefaciens DSM 7]
 gi|307607481|emb|CBI43852.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens DSM 7]
          Length = 1115

 Score =  980 bits (2533), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1026 (37%), Positives = 598/1026 (58%), Gaps = 38/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQV S YSLL  A S+  I+ +       ++A+TD N ++ A+EF +   + GI+P
Sbjct: 5    SFVHLQVRSGYSLLNSAASVKEIVTQAKELGYSSLALTDENVMYGAIEFYKACKSHGIKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    I   +                 +VLL  T  GYQ L+++ S +  + +G    
Sbjct: 65   IIGLTASIYTDETELEARP----------LVLLAETNTGYQNLLKISSALQSIAKGGMK- 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
                 W++    EGLI +T G +G I+        + A +    F++LFG+ R Y+  Q 
Sbjct: 114  ---RKWMKSYH-EGLIAITPGENGYIESLLQAGEFEEAVRVAEGFRELFGEGRFYLGYQP 169

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +G++   E ++++L+   E+ + A  +  ++ +ED +A+  L A+        +     
Sbjct: 170  FKGHETLSE-EILRLSAETEIAVCAAGDVRYIKKEDQDAYRCLCAIKAGEKWEDQSGDL- 227

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             PD YL+   EM +I+   PEA++    +A++C   + +    LP F   +     K  +
Sbjct: 228  -PDLYLRPPEEMENIYMKNPEAVKAAARVAQQCQVDVSLGQTQLPSFPAPDG----KSAD 282

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L      GL +R        G   +   +RL++EL+VI RMKFS YFLIV DF+++A 
Sbjct: 283  DYLAEVCHEGLRLRF-------GTPDERAVRRLEYELDVIRRMKFSDYFLIVWDFMKYAH 335

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ AY+L ITD+DPL+ SLLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 336  EKGIVTGPGRGSAAGSLVAYSLFITDVDPLKHSLLFERFLNPERISMPDIDIDFPDTRRD 395

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YVQNKYG   VAQIITFG+L AKAALRD GR   +   + D+L +LIP+ P   + 
Sbjct: 396  EVIQYVQNKYGSMHVAQIITFGTLAAKAALRDTGRVFGISPKEADQLARLIPSKPGMTLE 455

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A    ++          + ++ +I++K+EGL RH STHAAG+V+   PLS++VP+  +
Sbjct: 456  -EARRQSAQLNRRLSESAVLHKVFQIARKIEGLPRHTSTHAAGVVLSKEPLSEVVPLQ-E 513

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHE 607
                + +TQ+ M  +E  GL+K DFLGL+ LTL++     +  +   K+D S I + D +
Sbjct: 514  GHDGVYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESIKTMIEKETNTKIDFSEISYQDEK 573

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL+   T GIFQLESSGMR  L+ ++P  +EDI+A+ +LYRPGP++NI ++ +RK+G
Sbjct: 574  TFSLLSNGDTTGIFQLESSGMRNVLKRLKPSRLEDIVAVNALYRPGPMENIPLFIDRKHG 633

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            + ++   H  +  +L +T GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ KK K+ +D+
Sbjct: 634  RARVEVPHEDVRNILSDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKQKDILDR 693

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I YQ A++K HYP+ F
Sbjct: 694  ERSHFVEGCLKKEYSVVTANEVYDLIVKFANYGFNRSHAVAYSMIGYQLAYLKAHYPLYF 753

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N +KI ++  +A+   +Q++PPSVN     F   +  + YSL AIK VG 
Sbjct: 754  MCGLLTSVIGNEDKISQYLHEAKGSGLQVLPPSVNKSGFPFAPENGAVRYSLRAIKNVGV 813

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +  + I +A   KPF+ L DFC RV +K +NR+ +E+L+F+GA+D F  +R  LL S+D 
Sbjct: 814  SAVKDIYKARTHKPFEDLFDFCFRVPAKSVNRKTIEALIFSGAMDEFNQNRAALLASVDV 873

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++A+    +  +    +F  E  +FS K    +        +   E+  LG YFS HP
Sbjct: 874  ALEHAELFRAD--DDQMGLFLEE--SFSIKPKYVEAEEFPLVDKLRFEKEALGVYFSSHP 929

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L  ++ +L+K G +    ++   +G  + + A++   +  +T+ G  + ++T S+   E 
Sbjct: 930  LSAFRNLLKKRGAQAIATALQMPKGQ-LSIGALLAGIKTIRTKTGQHMAFLTLSDETGEM 988

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 989  EAVVFP 994


>gi|229158207|ref|ZP_04286274.1| DNA polymerase III subunit alpha [Bacillus cereus ATCC 4342]
 gi|228625165|gb|EEK81925.1| DNA polymerase III subunit alpha [Bacillus cereus ATCC 4342]
          Length = 1105

 Score =  980 bits (2533), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1025 (36%), Positives = 584/1025 (56%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PIIG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++  K              +VLL     GYQ L+++ S +      K    I 
Sbjct: 62   LTASIFSEEEEK-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEGIP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    +    AE+    ++ +F    Y++LQ H   
Sbjct: 107  KKWLVHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMF-GNFYMSLQHHAIQ 164

Query: 193  DRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  D
Sbjct: 165  DELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 252  HY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             Y LK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F     +      +  
Sbjct: 225  QYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVPANE----TNDTY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK-D 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 453  AYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    
Sbjct: 812  VTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA               A + G    K    +    +   +   E+ VLGFY S +P  
Sbjct: 872  EYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|255311363|ref|ZP_05353933.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 6276]
 gi|255317664|ref|ZP_05358910.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 6276s]
          Length = 1237

 Score =  980 bits (2533), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1076 (34%), Positives = 575/1076 (53%), Gaps = 60/1076 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+   + K    Q PA+A+TD  NLF A+EF +      I+P
Sbjct: 2    TWIPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +          + K+       ++LL    EGY+ L  L S  Y         
Sbjct: 62   IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYTEG-FYYVP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q H
Sbjct: 119  RIDRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLH 176

Query: 190  RGYDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +  +                            V+  +    +P VATN+  +L+ +D+ A
Sbjct: 177  KSSEEKVALFEETWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLA 236

Query: 228  HDVLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+          A  ++ + + K +   + + Y K+  E+  +F+  PE + NT  +
Sbjct: 237  HEILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEIAELFAAHPETITNTCIV 296

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQGA-- 327
            A RC   L       P ++ +         E E        L      GL  +       
Sbjct: 297  AERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLR 356

Query: 328  -IAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
             IAK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSGA
Sbjct: 357  HIAKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGA 416

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + 
Sbjct: 417  GSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDN 476

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            VAQIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S  A+  D   R+  
Sbjct: 477  VAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELRQLY 534

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
            + D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK 
Sbjct: 535  VDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKP 594

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            +E  G++K DFLGLKTLT +  +   +  + G+ +  + IP DD  T+ LL    T+GIF
Sbjct: 595  VESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIF 654

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            Q+ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P+
Sbjct: 655  QMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPI 714

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NGI
Sbjct: 715  LKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGI 774

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
              +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK
Sbjct: 775  DPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEK 834

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK 860
            + K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    + 
Sbjct: 835  VGKLIQEAHSMNILVLPPDINESGQDFEATQKGIRFSLGAVKGVGMSIVDSIVEEREKNG 894

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            P+ SL+DF  R D KK+ ++ LE+LV AG  DCF  ++   L  L+++       +K   
Sbjct: 895  PYKSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEAA 954

Query: 921  NKHENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                  F+ +          ++ E     +     + E+ +LG Y + HP+D  + +L  
Sbjct: 955  TGVLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPF 1014

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032
            + +    +      G  IR   ++     K  + +  +   +  S+    YE   +
Sbjct: 1015 LSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070


>gi|317508659|ref|ZP_07966315.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974]
 gi|316253062|gb|EFV12476.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974]
          Length = 1180

 Score =  980 bits (2533), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1068 (31%), Positives = 546/1068 (51%), Gaps = 53/1068 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL  H+ YS+L+G   +N + ++ A    PA+ +TD  N++ A EF + A   G+
Sbjct: 2    ADSFVHLHNHTEYSMLDGHAQVNAMFEEAARLGMPAVGMTDHGNMWGAAEFYRAAKKYGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQ----------GKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIG +  +          +            +       + ++   A+G   L++L S
Sbjct: 62   KPIIGIEAYLAPSSRFSTKREFWGQPSQRSDDVSGSGAYTHMTMVAKDAQGLHNLMKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +  Q  +  R+    L E    G+I  TG  SG +         + A +    F+++
Sbjct: 122  LASIEGQLGKWPRMDAEILAE-HGRGIIATTGCPSGEVQTKLRLGQFEEACEAAGRFQEI 180

Query: 178  F-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  +  Y+ L  H    +R     +++L    ++P +ATN+  ++ +E    H++L+ V 
Sbjct: 181  FGKENFYLELMDHGIDIERRVREDLLRLGERLKIPPLATNDCHYVKQEHARGHEILLCVQ 240

Query: 236  HSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHA--PI 291
                +S   R +   D +YLK+   M + + S +P A +NT+ +A +     +V      
Sbjct: 241  TGKTMSDPGRFKFDGDGYYLKSAELMRAAWDSQVPGACDNTLRVAEQVGSYDEVWEKRDR 300

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +P F   + +D    + + L  +   GLE R   G       A++YR R  FEL+VI + 
Sbjct: 301  MPVFPVPDGED----QNSWLAKEVDRGLERRFPDGV------AEEYRARAAFELDVIKQK 350

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFL+V D I +A+   I VGPGRGS AGS+ +YAL IT++DP+   LLFERFLNP+
Sbjct: 351  GFPSYFLVVGDLIAYARSVGIRVGPGRGSAAGSLVSYALGITNLDPIEHGLLFERFLNPE 410

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA--LQMPY 469
            R S PD DIDF   RR E+IRY   K+G +RVAQ+ITFG+++ KAA++D  R    Q  +
Sbjct: 411  RPSAPDIDIDFDDRRRGEMIRYASEKWGADRVAQVITFGTIKTKAAIKDSARVLHGQPGF 470

Query: 470  SQVDRLCKLIPN-DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEG 520
            S  DR+ K +P    A  + L  I D            RE   +DP V ++ E +  LEG
Sbjct: 471  SIADRITKALPPAIMAKDIPLSGITDPEHERYKEAAEIRELIASDPDVAKIYETALSLEG 530

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R+A  HA  I++ + PL   +P+++  +    +T ++    E  GL+K DFLGL+ LT
Sbjct: 531  LIRNAGVHACAIIMSNEPLIDTIPLWKRAQDGAIITGWDYPSCEDIGLLKMDFLGLRNLT 590

Query: 581  LLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  +++ + Q RG+++DL  +P  D  T+ LL+   TLG+FQL+   MR  L  M+P  
Sbjct: 591  VIGDAIENIRQNRGIELDLETVPLTDPATFALLSRGETLGVFQLDGGPMRDLLRRMRPTG 650

Query: 640  IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQE 693
              DI+A++SLYRPGP+  +    Y +RKNG+++I  IHP ++     +L ET G+I+YQE
Sbjct: 651  FGDIVAVLSLYRPGPMGVNAHNDYADRKNGRQQIKPIHPELEEPLKEILAETYGLIVYQE 710

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            Q+M IAQ ++ YS+ +AD LR+AMGKK  E +  + E F +G   NG S+     +++ +
Sbjct: 711  QIMFIAQKVASYSMGKADALRKAMGKKKLEVLQAEYEGFAAGMLGNGFSEAAIKALWDTV 770

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FADY FNKSHAA Y +++Y TA++K +YP E++AA +T   D+ +K   +  D R+  
Sbjct: 771  LPFADYAFNKSHAACYGLVAYWTAYLKANYPAEYMAALLTSVGDDKDKAAVYLADCRKMG 830

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
            I ++ P VN   VDF      I + L+A++ VG      I+    A+  F S  D+ ++ 
Sbjct: 831  ITVLAPDVNKSRVDFAAVGEDILFGLSAVRNVGVGLVESIIRTREAEGAFTSFSDYLAKA 890

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--E 930
            D    N++ +ESL+ AG  D  G+ R  L              +K       ++F+   E
Sbjct: 891  DIAACNKKAVESLIKAGGFDALGHPRKGLYLVHAEAVDAVMGTKKAEAQGQYDLFSDFFE 950

Query: 931  KGTFSDKITLE---KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
             G+     T E        +   +   E+ +LG Y SGHPL   +  L           +
Sbjct: 951  SGSPELASTFETQIPDEEWDMKQKLALEREMLGLYVSGHPLAGLEQALAAATDVSIRSIL 1010

Query: 988  --ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G ++++  ++    ++  + G+        +     E   FP
Sbjct: 1011 DGEVKDGTSVKVGGVLSGVNRRVNKNGAPYASAQLEDLVGGIEVFLFP 1058


>gi|228917242|ref|ZP_04080799.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            pulsiensis BGSC 4CC1]
 gi|228842443|gb|EEM87534.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            pulsiensis BGSC 4CC1]
          Length = 1105

 Score =  979 bits (2531), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1025 (36%), Positives = 584/1025 (56%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PIIG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++  K              +VLL     GYQ L+++ S +      K    I 
Sbjct: 62   LTASIFSEEEEK-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEGIP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    +    AE+    ++ +F    Y++LQ H   
Sbjct: 107  KKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMF-GNFYMSLQHHAIQ 164

Query: 193  DRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            D     + +        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  D
Sbjct: 165  DELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 252  HY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             Y LK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F     +      +  
Sbjct: 225  QYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVPSNE----TNDMY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK-D 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 453  AYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    
Sbjct: 812  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA               A + G    K    +    +   +   E+ VLGFY S +P  
Sbjct: 872  EYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|228929651|ref|ZP_04092669.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
 gi|228830038|gb|EEM75657.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
          Length = 1105

 Score =  979 bits (2531), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1025 (36%), Positives = 584/1025 (56%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PIIG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++  K              +VLL     GYQ L+++ S +      K    I 
Sbjct: 62   LTASIFSEEEEK-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEGIP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    +    AE+    ++ +F    Y++LQ H   
Sbjct: 107  KKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMF-GNFYMSLQHHAIQ 164

Query: 193  DRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            D     + +        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  D
Sbjct: 165  DELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 252  HY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             Y LK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F     +      +  
Sbjct: 225  QYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVPSNE----TNDMY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL+ R        G   + +  RL+ ELNVI+ M FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK-D 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 453  AYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +K+ ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKVVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    
Sbjct: 812  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA               A + G    K    +    +   +   E+ VLGFY S +P  
Sbjct: 872  EYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|183222285|ref|YP_001840281.1| DNA polymerase III subunit alpha [Leptospira biflexa serovar Patoc
            strain 'Patoc 1 (Paris)']
 gi|189912335|ref|YP_001963890.1| DNA-directed DNA polymerase subunit alpha [Leptospira biflexa serovar
            Patoc strain 'Patoc 1 (Ames)']
 gi|167777011|gb|ABZ95312.1| DNA-directed DNA polymerase, alpha subunit [Leptospira biflexa
            serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167780707|gb|ABZ99005.1| DNA polymerase III alpha subunit [Leptospira biflexa serovar Patoc
            strain 'Patoc 1 (Paris)']
          Length = 1173

 Score =  979 bits (2531), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1044 (34%), Positives = 574/1044 (54%), Gaps = 31/1044 (2%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            Q +E    F HL +H++YS+L+GA+ +++++ ++      ++AITD  N++ A+EF ++A
Sbjct: 7    QAME---DFAHLHLHTTYSMLDGAIRISDLMKRVKELGMSSVAITDHGNMYGAIEFYKEA 63

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                ++PIIGC+  +        T   +        I+LL     GYQ +I+L SR +  
Sbjct: 64   VKHEVKPIIGCEFYVTP-SRSAETELDEIADGGAYHIILLCKNEVGYQNIIKLASRSFTE 122

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181
                +  RI    L E  +EGL+ LT   +G ++R         A        ++F  + 
Sbjct: 123  G-FYRKPRIDYDLL-ERHSEGLVCLTACLAGEVNRKILEGKEDKAYALAGRLHEIFRKED 180

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ +Q H   ++   ++ V+  +    +PLV TN+S FL+++D EA D+L+ +     +
Sbjct: 181  FYLEIQDHGIPEQKTVAEAVIGFSKRTGIPLVLTNDSHFLTKDDREAQDILLRIGMRKNI 240

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              + R     + Y+K+  EM ++F +  +A  NT+ I  +CS   Q   P+LP F     
Sbjct: 241  DDEMRFGFNQNFYVKSPEEMKTLFPNHLDAYYNTLAIRDKCSLNFQFGNPLLPPFEVPPG 300

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D     ++ L      G++ +  +            ++R +FE+  I  M F+GYFLIV
Sbjct: 301  FD----TDSYLEKLVWEGIQEKYKE-------ITPIVKERTEFEMQTIRNMHFAGYFLIV 349

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D+I +A++  IPVGPGRGS AGS+ AYAL IT++DP+R++LLFERFLNPDR  MPD D 
Sbjct: 350  QDYINFARRTGIPVGPGRGSAAGSIIAYALGITNVDPIRYNLLFERFLNPDRKDMPDIDT 409

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC +RR+EVI Y++++YG  RV QIITFGSL AKAA++DV R   +P+S+V+ + KL P
Sbjct: 410  DFCVERREEVINYIKHRYGENRVGQIITFGSLAAKAAIKDVARVFNVPFSEVNEMSKLFP 469

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  +  +A+      R+         ++  I+QKLEG YR    HAAG+VI    L 
Sbjct: 470  KKLGITIQ-EAVETSKDLRDIAEKSELNKKVFSIAQKLEGNYRQVGRHAAGVVIAPTALE 528

Query: 541  QLVPM----YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
            ++VP+             VTQ++    E+ GLIK D LGLK LT +  +   + +R  + 
Sbjct: 529  EIVPLSTVSEPGRDGRSIVTQYDKNMSEQVGLIKMDILGLKNLTTIHHATKLIEKRHGIL 588

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLE-SSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +DL  IP DD  T+ LL     LGIFQL+ SSG+R      Q    E+I AL++LYRPGP
Sbjct: 589  IDLDKIPLDDPATFSLLRKANVLGIFQLDSSSGIRDLFAKAQVQKFEEIAALLALYRPGP 648

Query: 655  IDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            + + +   Y +RKNGK+K+V  H  +  +L ET GVI+YQEQVM I++++ G+S+ ++DV
Sbjct: 649  MGSGMLDDYLDRKNGKKKVVFPHESLAEVLGETYGVIVYQEQVMGISRIMGGFSVGDSDV 708

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LR+AM KK K ++   KE+F+ GA +  I++ +A  +FE L KF +YGFNKSH+ AYA +
Sbjct: 709  LRKAMAKKDKSKLPALKEKFVKGAIEKKINEKLATELFEQLEKFGEYGFNKSHSVAYAFV 768

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-G 831
            +YQTA++K +Y +E+L A ++ +   +  + K+  +A++  I+I+ P V    + F++  
Sbjct: 769  TYQTAFLKANYSIEYLTALLSGDHSKITDVVKYINNAKEMGIRILGPDVKESGISFEITD 828

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            D  + + L++IKGVG   A++I+    +   +  L DF  ++D++  N++VLESL   GA
Sbjct: 829  DTTVRFGLSSIKGVGELAAQNIIHNRNELGGYKQLSDFTKKLDTRLANKKVLESLAQGGA 888

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSS 949
             D FGYSR  + +S D I  YA   +        ++F    G   + + L K     N  
Sbjct: 889  FDSFGYSRKTISESTDIILNYANKKQAEEKEGQFSLFGGVNGGSEENLNLPKDGIEWNDD 948

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 E+   G Y SGHPLD +   L+ +     E        + + +A ++  K  K T
Sbjct: 949  ELLRREKETTGLYLSGHPLDKFTEQLKSLNPTSIENLEEVRPKSKVEIAGVLSKKVVKLT 1008

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            +K          +   E E   FP
Sbjct: 1009 KKKEEFVNFMLEDQTGEIECVAFP 1032


>gi|229180923|ref|ZP_04308258.1| DNA polymerase III subunit alpha [Bacillus cereus 172560W]
 gi|228602480|gb|EEK59966.1| DNA polymerase III subunit alpha [Bacillus cereus 172560W]
          Length = 1105

 Score =  979 bits (2530), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1025 (36%), Positives = 590/1025 (57%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+IG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++  +              +VLL     GYQ L+++ S +      K    I 
Sbjct: 62   LTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEGIP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    ++   AE+   T++ +F    Y++LQ H   
Sbjct: 107  KKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMF-GHFYMSLQHHAIQ 164

Query: 193  -DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             +   + ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  D
Sbjct: 165  AELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 252  HY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             Y LK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     +      +  
Sbjct: 225  QYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNE----TSDIY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL  R        G   + + +RL+ ELNVI+RM FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLRKRY-------GEPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK-D 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 453  AYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A +   ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+    
Sbjct: 812  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA               A + G    K    +    +   +   E+ VLGFY S +P  
Sbjct: 872  EYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|30022680|ref|NP_834311.1| DNA polymerase III DnaE [Bacillus cereus ATCC 14579]
 gi|29898239|gb|AAP11512.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
          Length = 1108

 Score =  979 bits (2530), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1027 (36%), Positives = 589/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  +              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +F    Y++LQ H 
Sbjct: 108  ILKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVDRTYQNMF-GHFYMSLQHHA 165

Query: 191  GYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + +        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLLEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNE----TSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL  R        G   + + +RLD ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRKRY-------GEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A +   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKIGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA               A + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|237802974|ref|YP_002888168.1| DNA polymerase III subunit alpha [Chlamydia trachomatis B/Jali20/OT]
 gi|231274208|emb|CAX11002.1| DNA polymerase III alpha subunit [Chlamydia trachomatis B/Jali20/OT]
          Length = 1237

 Score =  979 bits (2530), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1076 (34%), Positives = 576/1076 (53%), Gaps = 60/1076 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+N  + K    Q PA+A+TD  NLF A+EF +      I+P
Sbjct: 2    TWIPLHCHSQYSILDATCSINKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +          + K+       ++LL    EGY+ L  L S  Y         
Sbjct: 62   IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYTEG-FYYVP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q H
Sbjct: 119  RIDRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLH 176

Query: 190  RGYDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +  +                            V+  +    +P VATN+  +L+ +D+ A
Sbjct: 177  KSSEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLA 236

Query: 228  HDVLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+          A  ++ + + K +   + + Y K+   M  +F+  PE + NT  +
Sbjct: 237  HEILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQGMAELFAAHPETITNTCIV 296

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---G 326
            A RC   L       P ++ +         E E        L      GL  +      G
Sbjct: 297  AERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLG 356

Query: 327  AIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
             IAK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSGA
Sbjct: 357  HIAKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGA 416

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + 
Sbjct: 417  GSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDN 476

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            VAQIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S  A+  D   R+  
Sbjct: 477  VAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELRQLY 534

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
            + D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK 
Sbjct: 535  VDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKP 594

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            +E  G++K DFLGLKTLT +  +   +  + G+ +  + IP DD  T+ LL    T+GIF
Sbjct: 595  VESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIF 654

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            Q+ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P+
Sbjct: 655  QMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPI 714

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NGI
Sbjct: 715  LKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGI 774

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
              +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK
Sbjct: 775  DPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEK 834

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK 860
            + K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    + 
Sbjct: 835  VGKLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKNG 894

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            P+ SL+DF  R D KK+ ++ LE+LV AG  DCF  ++   L  L+++       +K   
Sbjct: 895  PYKSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEAA 954

Query: 921  NKHENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                  F+ +          ++ E     +     + E+ +LG Y + HP+D  + +L  
Sbjct: 955  TGVLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPF 1014

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032
            + +    +      G  IR   ++     K  + +  +   +  S+    YE   +
Sbjct: 1015 LSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070


>gi|237804896|ref|YP_002889050.1| DNA polymerase III subunit alpha [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273196|emb|CAX10109.1| DNA polymerase III alpha subunit [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 1237

 Score =  979 bits (2530), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1076 (34%), Positives = 575/1076 (53%), Gaps = 60/1076 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+   + K    Q PA+A+TD  NLF A+EF +      I+P
Sbjct: 2    TWIPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +          + K+       ++LL    EGY+ L  L S  Y         
Sbjct: 62   IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYTEG-FYYVP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q H
Sbjct: 119  RIDRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLH 176

Query: 190  RGYDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +  +                            V+  +    +P VATN+  +L+ +D+ A
Sbjct: 177  KSSEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLA 236

Query: 228  HDVLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+          A  ++ + + K +   + + Y K+   M  +F+  PE + NT  +
Sbjct: 237  HEILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQGMAELFAAHPETITNTCIV 296

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---G 326
            A RC   L       P ++ +         E E        L      GL  +      G
Sbjct: 297  AERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLG 356

Query: 327  AIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
             IAK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSGA
Sbjct: 357  HIAKKFPGEDPLTLVKERLKLESSIIIPKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGA 416

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + 
Sbjct: 417  GSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDN 476

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            VAQIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S  A+  D   R+  
Sbjct: 477  VAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELRQLY 534

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
            + D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK 
Sbjct: 535  VDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKP 594

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            +E  G++K DFLGLKTLT +  +   +  + G+ +  + IP DD  T+ LL    T+GIF
Sbjct: 595  VESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIF 654

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            Q+ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P+
Sbjct: 655  QMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPI 714

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NGI
Sbjct: 715  LKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGI 774

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
              +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK
Sbjct: 775  DPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEK 834

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK 860
            + K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    + 
Sbjct: 835  VGKLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKNG 894

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            P+ SL+DF  R D KK+ ++ LE+LV AG  DCF  ++   L  L+++       +K   
Sbjct: 895  PYKSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEAA 954

Query: 921  NKHENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                  F+ +          ++ E     +     + E+ +LG Y + HP+D  + +L  
Sbjct: 955  TGVLTFFSLDSMARDPVRITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPF 1014

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032
            + +    +      G  IR   ++     K  + +  +   +  S+    YE   +
Sbjct: 1015 LSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070


>gi|296393842|ref|YP_003658726.1| DNA polymerase III subunit alpha [Segniliparus rotundus DSM 44985]
 gi|296180989|gb|ADG97895.1| DNA polymerase III, alpha subunit [Segniliparus rotundus DSM 44985]
          Length = 1179

 Score =  978 bits (2529), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/1068 (31%), Positives = 547/1068 (51%), Gaps = 53/1068 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL  H+ YSLL+G   ++ +  + A  + PA+ +TD  N++ + EF + +   G+
Sbjct: 2    SDSFVHLHNHTEYSLLDGHAQVDAMFQEAARLKMPAVGMTDHGNMWGSAEFYKASKKHGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQ----------GKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIG +  +          +            +       + ++   A+G + L++L S
Sbjct: 62   KPIIGIEAYLAPSSRFSTKREFWGEPGQRSDDVSGSGAYTHMTMVAKDAQGLRNLMKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
                  Q  +  R+    L E    G+I  TG  SG +         + A +    F+++
Sbjct: 122  LASFEGQLGKWPRMDAELLAE-HGRGVIATTGCPSGEVQTKLRLGQFEAACEAAGRFQEI 180

Query: 178  F-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  +  Y+ L  H    +R     +++L    ++P +ATN+  ++ +E    H++L+ V 
Sbjct: 181  FGKENFYLELMDHGIDIERRVREDLLRLGERLKIPPLATNDCHYVRQEHARGHEILLCVQ 240

Query: 236  HSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHA--PI 291
                +S   R +   D +YLK    M + + S++P A +NT+ IA +     +V      
Sbjct: 241  TGKTMSDPGRFKFDGDGYYLKPADMMRAAWDSEVPGACDNTLLIAEQVGSYDEVWEVRDR 300

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +P F   + +D    + + LR++   GL+ R   G       + +YR R  FEL+VI + 
Sbjct: 301  MPVFPVPDGED----QNSWLRHEVDRGLQRRFPDGV------SDEYRARAAFELDVIKQK 350

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFLIV D I +A+   I VGPGRGS AGS+ +YAL IT++DP++  LLFERFLNP+
Sbjct: 351  GFPSYFLIVGDLIAYARSVGIRVGPGRGSAAGSLVSYALGITNLDPIKHGLLFERFLNPE 410

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA--LQMPY 469
            R S PD DIDF   RR E+IRY   K+G +RVAQ+ITFG+++ KAAL+D  R    Q  +
Sbjct: 411  RPSAPDIDIDFDDRRRGEMIRYASEKWGADRVAQVITFGTIKTKAALKDSARVLHGQPGF 470

Query: 470  SQVDRLCKLIPN-DPAHPVSLQAI--------ADDSRFREARLADPSVDRLLEISQKLEG 520
            +  DR+ K +P    A  + L  I         + +  RE    DP V ++ E +  LEG
Sbjct: 471  AIADRITKALPPAIMAKDIPLSGITNPEHERYKEATEIRELIANDPDVAKIYETALSLEG 530

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R+A  HA  I++ + PL + +P+++  +    +T ++    E  GL+K DFLGL+ LT
Sbjct: 531  LIRNAGVHACAIIMSNEPLIETIPLWKRPQDGAIITGWDYPSCEDIGLLKMDFLGLRNLT 590

Query: 581  LLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  +++ + Q RGV++DL   P DD  T+ LL+   TLG+FQL+   MR  L  M+P  
Sbjct: 591  VIGDAIENIRQNRGVELDLENAPLDDPATFALLSRGETLGVFQLDGGPMRDLLRRMKPTG 650

Query: 640  IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQE 693
              DI+A++SLYRPGP+  +    Y +RKNG+++I  IHP ++     +L ET G+I+YQE
Sbjct: 651  FGDIVAVLSLYRPGPMGVNAHNDYADRKNGRQQIKPIHPELEEPLKEILSETYGLIVYQE 710

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            Q+M IAQ ++GYS+ +AD LR+AMGKK  E +  + E F  G   NG S+     +++ +
Sbjct: 711  QIMFIAQKVAGYSMGKADALRKAMGKKKLEVLQAEYEGFSQGMRGNGFSEAAVKALWDTV 770

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FADY FNKSHAA YA+++Y T ++K +YP E++AA +T   D+ +K   +  D R+  
Sbjct: 771  LPFADYAFNKSHAACYALVAYWTGYLKANYPAEYMAALLTSVGDDKDKAAVYLADCRKMG 830

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRV 872
            I ++ P VN   VDF      I + L+ ++ VG      I+     +  F S  D+ ++ 
Sbjct: 831  ITVLAPDVNKSRVDFAAVGEDILFGLSGVRNVGVGLVESIIRTRESEGAFTSFSDYLAKA 890

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D    N++ +ESL+ AG  D  G+ R  L              +K       ++F+    
Sbjct: 891  DITACNKKAVESLIKAGGFDALGHPRKGLYLVHTEAVDAVMSTKKAEAQGQYDLFSDFFE 950

Query: 933  TFSDKITLE-----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
            + S ++T            +   +   E+ +LG Y SGHPL   +  L           +
Sbjct: 951  SGSPELTATFEVQIPDEEWDMKQKLALEREMLGLYVSGHPLAGLEQALAAATDVSIRSIL 1010

Query: 988  --ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G N+++  ++    ++  + G+        +     E   FP
Sbjct: 1011 DGEVKDGTNVKVGGVLSGVNRRVNKNGAPYASAQLEDLVGGIEVFLFP 1058


>gi|145224220|ref|YP_001134898.1| DNA polymerase III subunit alpha [Mycobacterium gilvum PYR-GCK]
 gi|315444554|ref|YP_004077433.1| DNA polymerase III subunit alpha [Mycobacterium sp. Spyr1]
 gi|145216706|gb|ABP46110.1| DNA polymerase III, alpha subunit [Mycobacterium gilvum PYR-GCK]
 gi|315262857|gb|ADT99598.1| DNA polymerase III, alpha subunit [Mycobacterium sp. Spyr1]
          Length = 1183

 Score =  978 bits (2528), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/1066 (31%), Positives = 535/1066 (50%), Gaps = 50/1066 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  +  +L +    + PAI +TD  N+F A EF   A  AGI+P
Sbjct: 4    SFVHLHNHTEYSMLDGAAKVKPMLAEAQRLEMPAIGMTDHGNMFGASEFYNAATDAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  I                       +   +   + ++   A G + L +L S  
Sbjct: 64   IIGIEAYIAPASRFDTKRVLWGDPGQKSDDVSGSGSYTHMTMVAENATGLRNLFKLSSLA 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF- 178
                Q  +  R+    + E   EG+I  TG  SG +         + A +    ++++F 
Sbjct: 124  SFEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHDREALEAAARWREIFG 182

Query: 179  GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +  ++ L  H    +R     ++++     +P +ATN+  +++ +  + H+ L+ +   
Sbjct: 183  PENFFLELMDHGLDIERRVREGLLEIGQKLGIPPLATNDCHYVTRDASQNHEALLCIQTG 242

Query: 238  TVVSQKDRPRVTPD-HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPI--LP 293
              +S  +R +   D +YLK+ +EM +++   +P A ++T+ IA R      V AP   +P
Sbjct: 243  KTLSDPNRFKFDGDGYYLKSAAEMRALWDGQVPGACDSTLLIAERVQPYTDVWAPKDRMP 302

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             F   E  D      + L ++ +AGLE R    A A G    +Y +R D+E+ VI    F
Sbjct: 303  VFPVPEGHDQG----SWLTHEVMAGLERRF--SAAAGGQVPPEYIERADYEIKVICDKGF 356

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFLIVAD I +AK   I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R 
Sbjct: 357  PAYFLIVADLINYAKSVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERP 416

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471
            S PD DIDF   RR E++RY  NK+G +RVAQ+ITFG+++ KAAL+D  R    Q  ++ 
Sbjct: 417  SAPDIDIDFDDRRRGEMLRYAANKWGSDRVAQVITFGTIKTKAALKDSARVHYGQPGFAI 476

Query: 472  VDRLCKL---------IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K          IP       + +   + +  R     DP V  + E ++ LEGL 
Sbjct: 477  ADRITKALPPPIMAKDIPVSGITDPTHERYKEAAEVRALIDTDPDVRTIYETARGLEGLV 536

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R+A  HA  +++   PL   +P+++  +    +T ++    E  GL+K DFLGL+ LT++
Sbjct: 537  RNAGVHACAVIMSSEPLIDAIPLWKRPQDGAVITGWDYPSCEAIGLLKMDFLGLRNLTII 596

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
               ++ +   RGV VDL  +  DD + Y LL    TLG+FQL+ S MR  L  MQP    
Sbjct: 597  GDCIENIKANRGVDVDLESLALDDPKAYELLGRGDTLGVFQLDGSAMRDLLRRMQPTEFN 656

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQV 695
            DI+A+++LYRPGP+       Y +RKNG++ I  IHP ++     +L ET G+I+YQEQ+
Sbjct: 657  DIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKDILAETYGLIVYQEQI 716

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M IAQ ++ YS+ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++ +  
Sbjct: 717  MFIAQKVASYSMGKADALRKAMGKKKLEVLEAEYKGFKEGMTANGFSEGAVKALWDTILP 776

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSHAA Y ++SY TA++K +Y  E++A  +T   D+ +K   +  D R+  I 
Sbjct: 777  FAGYAFNKSHAAGYGLVSYWTAYLKANYQAEYMAGLLTSVGDDKDKAAIYLADCRRLGIT 836

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            ++PP VN    +F    + I + L A++ VG      ++    +   +    D+ +++D 
Sbjct: 837  VLPPDVNESVQNFASVGDDIRFGLGAVRNVGANVVASLVSTREEKGKYTDFSDYLNKIDI 896

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
                ++V ESL+ AGA D  G+ R  L     +        +K       ++F       
Sbjct: 897  TACTKKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGGDDDG 956

Query: 935  SDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-- 987
                    I +          +   E+ +LG Y SGHPL+    +L           +  
Sbjct: 957  DTGDSAFTIKVPD-EEWEDKHKLALEREMLGLYVSGHPLNGIAHLLTAQVDTQIPAILEG 1015

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            A      +R+  ++ S  ++  + G         + +   E  FFP
Sbjct: 1016 AIPNDAQVRVGGILASVNRRVNKNGLPWASAQIEDLSGGIEVLFFP 1061


>gi|225025259|ref|ZP_03714451.1| hypothetical protein EIKCOROL_02156 [Eikenella corrodens ATCC 23834]
 gi|224942017|gb|EEG23226.1| hypothetical protein EIKCOROL_02156 [Eikenella corrodens ATCC 23834]
          Length = 1143

 Score =  978 bits (2528), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/1035 (38%), Positives = 600/1035 (57%), Gaps = 34/1035 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P ++ L+ H+ +S+ +G L +  ++ K +A   PA+ I+D  N F  ++F +    AGI
Sbjct: 3    APVYIPLRQHTEFSITDGTLRIKELVKKASAFGLPALGISDLMNTFGLVKFYKACRGAGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGK 126
            +P++G  + +   +N +               +LLV    GY+RL EL++R Y+  D+  
Sbjct: 63   KPVVGADVWVANPENPE----------QPFRAMLLVRNEAGYRRLCELLTRAYVGTDRNV 112

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +   WL E G EGLI L+G   G + R         A      + + F D  Y+ L
Sbjct: 113  AHAELEPQWLAEGGNEGLICLSGAHLGEVGRQLMNGHDSAACAAAQKYAQWFPDAFYLEL 172

Query: 187  QRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            QR      +    S  ++LA    LP+VAT+ + FL+ +D++AHD  + +A   V++ K 
Sbjct: 173  QRLPEKPEWETSVSGSLKLAAELGLPVVATHPAQFLNPDDFKAHDARVCIAGGWVLADKR 232

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RPR      Y  +  E+ + F+DLPEAL+NTVEIA+RC+  L +    LP+F   +   +
Sbjct: 233  RPRDFVAGQYFASPEEVAARFADLPEALQNTVEIAKRCNLTLTLGKNFLPQFPTPDGMSL 292

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                ++ L + +  GL  RLA        +     +Y+ RLDFEL  I +M F GYFLIV
Sbjct: 293  ----DDYLAHLSNQGLRERLAALYPDEAEREQKLPEYQARLDFELGTIVQMGFPGYFLIV 348

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFI WAK N  PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDI
Sbjct: 349  ADFINWAKNNGCPVGPGRGSGAGSLVAYSLKITDLDPLRYALLFERFLNPERVSMPDFDI 408

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+ R  VI YV+ KYG E V+QI+TFG+L +KA +RDVGR L++P+   DRL KLIP
Sbjct: 409  DFCQNNRGRVIEYVRQKYGFEAVSQIVTFGTLSSKAVIRDVGRVLELPFGVCDRLSKLIP 468

Query: 481  NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +   P+SL +A+  +    +    + + +  +E+++KLE L R    HA G++I    +
Sbjct: 469  LEANKPLSLEKAMEAEPEIAKVLEEEEAEEL-MELAKKLEDLTRGLGMHAGGVLIAPGKI 527

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + +F+AQ    ++D+
Sbjct: 528  SDFCPVYQADESASPVSMYDKGDVEDIGLVKFDFLGLRNLTIIEMAQEFIAQTTGERIDV 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + I   D + Y +     T  +FQ ES+GM++ L       +E+IIA VSLYRPGP+D I
Sbjct: 588  NHIDLTDQQAYEVFRKANTTAVFQFESTGMKKMLAQANTTKLEEIIAFVSLYRPGPMDLI 647

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  R  G  +   +H L++P+L+ T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMG
Sbjct: 648  PDFIARMKG-ARFEYMHLLLEPVLQPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAMG 706

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM K +E F  GA+K GI++  A  IF+ + KFA YGFNKSHAAAYA+++YQTAW
Sbjct: 707  KKKPEEMAKHREIFAEGAAKQGIAREKADEIFDYMEKFAGYGFNKSHAAAYALVAYQTAW 766

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYY 837
            +K HYP EF+AA+M+ E+DN +++K F  DAR   I+ +PP VN     F+    +RI Y
Sbjct: 767  LKAHYPAEFMAATMSSELDNTDQLKLFYDDARDNGIRFLPPDVNHSGYHFQPDAQHRIRY 826

Query: 838  SLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            +L AIKG G      I+ A  +   F SL DFC RV  + +NRR +E+LV  GA D    
Sbjct: 827  ALGAIKGTGEAAVEAIVAAREEGGAFKSLFDFCERVSRQHINRRTIEALVRGGAFDSIEP 886

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R +LL ++D     A+  E+N       +F   +   +  + +        +     E+
Sbjct: 887  NRARLLANIDLAMSNAEQQEENAN--QGGLFDMVEDAIAP-LEMIDVPAWGEAELLAEEK 943

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            + +GFYFSGHP    +  +R+       +       +N+R+A    + +    ++G  I 
Sbjct: 944  QAIGFYFSGHPFGPAEKEVRQFAPTRLSQLKP---NDNVRVAGFATAIRSMVGKRGK-IA 999

Query: 1017 WVTFSEPAKEYEANF 1031
            ++T  +   + E   
Sbjct: 1000 FITLEDTGGKAEVMV 1014


>gi|296436078|gb|ADH18252.1| DNA polymerase III subunit alpha [Chlamydia trachomatis G/9768]
 gi|296437006|gb|ADH19176.1| DNA polymerase III subunit alpha [Chlamydia trachomatis G/11222]
 gi|296437939|gb|ADH20100.1| DNA polymerase III subunit alpha [Chlamydia trachomatis G/11074]
 gi|297140439|gb|ADH97197.1| DNA polymerase III subunit alpha [Chlamydia trachomatis G/9301]
          Length = 1237

 Score =  978 bits (2528), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1076 (34%), Positives = 575/1076 (53%), Gaps = 60/1076 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+   + K    Q PA+A+TD  NLF A+EF +      I+P
Sbjct: 2    TWIPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +          + K+       ++LL    EGY+ L  L S  Y         
Sbjct: 62   IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYTEG-FYYVP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q H
Sbjct: 119  RIDRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLH 176

Query: 190  RGYDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +  +                            V+  +    +P VATN+  +L+ +D+ A
Sbjct: 177  KSSEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLA 236

Query: 228  HDVLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+          A  ++ + + K +   + + Y K+  E+  +F+  PE + NT  +
Sbjct: 237  HEILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEIAELFAAHPETITNTCIV 296

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---G 326
            A RC   L       P ++ +         E E        L      GL  +      G
Sbjct: 297  AERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLG 356

Query: 327  AIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
             IAK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSGA
Sbjct: 357  HIAKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGA 416

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + 
Sbjct: 417  GSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDN 476

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            VAQIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S  A+  D   R+  
Sbjct: 477  VAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELRQLY 534

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
            + D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK 
Sbjct: 535  VDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKP 594

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            +E  G++K DFLGLKTLT +  +   +  + G+ +  + IP DD  T+ LL    T+GIF
Sbjct: 595  VESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIF 654

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            Q+ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P+
Sbjct: 655  QMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPI 714

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NGI
Sbjct: 715  LKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGI 774

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
              +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK
Sbjct: 775  DPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEK 834

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK 860
            + K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    + 
Sbjct: 835  VGKLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKNG 894

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            P+ SL+DF  R D KK+ ++ LE+LV AG  D F  ++   L  L+++       +K   
Sbjct: 895  PYKSLQDFVQRADFKKVTKKQLENLVDAGTFDRFEPNKDLALAILNDLYDTFSREKKEAA 954

Query: 921  NKHENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                  F+ +          ++ E     +     + E+ +LG Y + HP+D  + +L  
Sbjct: 955  TGVLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPF 1014

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032
            + +    +      G  IR   ++     K  + +  +   +  S+    YE   +
Sbjct: 1015 LSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070


>gi|154687056|ref|YP_001422217.1| DNA polymerase III DnaE [Bacillus amyloliquefaciens FZB42]
 gi|154352907|gb|ABS74986.1| DnaE [Bacillus amyloliquefaciens FZB42]
          Length = 1115

 Score =  978 bits (2528), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1026 (37%), Positives = 598/1026 (58%), Gaps = 38/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQVHS YSLL  A S+  ++ +       ++A+TD N ++ A+EF +   + GI+P
Sbjct: 5    SFVHLQVHSGYSLLNSAASVKELVTQAKELGYSSLALTDENVMYGAIEFYKACKSNGIKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    I   D                 ++LL  T  GYQ L+++ S +  + +G    
Sbjct: 65   IIGLTASIYTDDTEL----------EAHPLILLAETNTGYQNLVKISSALQSMAKGGMK- 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
                 W++    EGLI +T G +G I+        + A +    F++LFGD R Y+  Q 
Sbjct: 114  ---RKWMKSYH-EGLIAITPGENGYIESLLQTGKFEEAVRAAEGFRELFGDGRFYLGYQP 169

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +G++   E ++++L+   E+ + A  +  ++ +ED +A+  L A+        +     
Sbjct: 170  FKGHETLSE-EILRLSAETEIAVCAAGDVRYIKKEDQDAYRCLCAIKAGEKWEDQSGNL- 227

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             PD YL+   EM  +++  PEA+E    IAR+C   + +    LP F   +     K  +
Sbjct: 228  -PDLYLRAPEEMAELYTRHPEAIEAAARIARQCRVDVSLGQTQLPSFPAPDG----KSAD 282

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L      GL +R        G   +   +RL++EL+VI RMKFS YFLIV DF+++A 
Sbjct: 283  DYLAEICHEGLRLRF-------GTPDERAVRRLEYELDVIRRMKFSDYFLIVWDFMKYAH 335

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ AY+L ITD+DPL+ SLLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 336  EKGIVTGPGRGSAAGSLVAYSLFITDVDPLKHSLLFERFLNPERISMPDIDIDFPDTRRD 395

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YVQNKYG   VAQIITFG+L AKAALRD GR   +   + D+L +LIP+ P   + 
Sbjct: 396  EVIQYVQNKYGAMHVAQIITFGTLAAKAALRDTGRVFGISPKEADQLARLIPSKPGMTLE 455

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A    ++          + ++ +I++K+EGL RH STHAAG+V+   PLS++VP+  +
Sbjct: 456  -EARRQSAQLNRRLSESAVLHKVFQIARKIEGLPRHTSTHAAGVVLSKEPLSEVVPLQ-E 513

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHE 607
                + +TQ+ M  +E  GL+K DFLGL+ LTL++     +  +   K+D S I + D +
Sbjct: 514  GHDGVYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESIKTMIEKETNTKIDFSEISYQDEK 573

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL+   T GIFQLESSGMR  L+ ++P  +EDI+A+ +LYRPGP++NI ++ +RK+G
Sbjct: 574  TFSLLSNGDTTGIFQLESSGMRNVLKRLKPSRLEDIVAVNALYRPGPMENIPLFIDRKHG 633

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            + ++   H  +  +L +T GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ KK K+ +D+
Sbjct: 634  RARVEVPHEDVRNILSDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKQKDILDR 693

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I YQ A++K HYP+ F
Sbjct: 694  ERSHFVEGCLKKEYSVVTANEVYDLIVKFANYGFNRSHAVAYSMIGYQLAYLKAHYPLYF 753

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N +KI ++  +A+   IQ++PPS+N     F   +  + YSL A+K VG 
Sbjct: 754  MCGLLTSVIGNEDKISQYLHEAKGSGIQVLPPSINKSGFPFAPENGAVRYSLRAVKNVGV 813

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +  + I +A   KPF+ L DFC RV +K +NR+ +E+L+F+GA+D F  +R  LL S+D 
Sbjct: 814  SAVKDIYKARTHKPFEDLFDFCFRVPAKSVNRKTIEALIFSGAMDEFNQNRAALLASVDV 873

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++A+    +  +    +F  E  +FS K    +        +   E+  LG YFS HP
Sbjct: 874  ALEHAELFRAD--DDQMGLFLEE--SFSIKPKYVEAEEFPLVDKLRFEKEALGVYFSSHP 929

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L  ++ +L+K G +    +    +G  + + A++   +  +T+ G  + ++T S+   E 
Sbjct: 930  LSAFRDLLKKRGAQAITAARQMPKGQ-LSIGALLAGIKTIRTKTGQHMAFLTLSDETGEM 988

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 989  EAVVFP 994


>gi|163942337|ref|YP_001647221.1| DNA polymerase III DnaE [Bacillus weihenstephanensis KBAB4]
 gi|163864534|gb|ABY45593.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis KBAB4]
          Length = 1110

 Score =  978 bits (2528), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1027 (35%), Positives = 586/1027 (57%), Gaps = 47/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVIRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  +              +VLL     GYQ L+++ S +      K    
Sbjct: 63   IGLTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+   T++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVAHTYQNMFS-NFYISLQHHA 165

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFINKVNVPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRMK 225

Query: 250  PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D Y LK+  EM ++FS   EA++NT+ IA RC   +  H   LP+F     +      +
Sbjct: 226  TDQYYLKSSDEMGALFSHAEEAVQNTITIAERCQVEIPFHVNQLPKFPVPSNE----TND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+ R        G   + +  RLD ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  TYLRRVCEEGLQKRY-------GTPKEAHIGRLDHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYELLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +    +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLLPRDIDIFSKLIPSKLGITLR 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+  + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVEKTGKQIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K +I  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRQIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T +  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLENGYDETSSEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYVRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E   +K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEEREEKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDGFGVSRTTLWRSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYANLAR-----------DFDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 921

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 922  TAQYAELGKELEIPSLAQ--AMRHKKKVQRAIVYITSVKVIRTKKLQKMAFITFCDQNDE 979

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 980  MEAVIFP 986


>gi|222474932|ref|YP_002563347.1| DNA polymerase III, alpha subunit (dnaE) [Anaplasma marginale str.
            Florida]
 gi|255002906|ref|ZP_05277870.1| DNA polymerase III, alpha subunit (dnaE) [Anaplasma marginale str.
            Puerto Rico]
 gi|222419068|gb|ACM49091.1| DNA polymerase III, alpha subunit (dnaE) [Anaplasma marginale str.
            Florida]
          Length = 1127

 Score =  977 bits (2527), Expect = 0.0,   Method: Composition-based stats.
 Identities = 466/1024 (45%), Positives = 654/1024 (63%), Gaps = 31/1024 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLLEG + + +++        PA+A+TD+ NLF +LEFS  A + G+QPI
Sbjct: 6    FVHLRTHSDYSLLEGMIKIESLVAMCVDQNMPAVALTDSGNLFGSLEFSDCAASFGVQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC + +                  + +I++L  + EG+  LI LVS  +  +Q  ++ R
Sbjct: 66   VGCNIMVH------------DAGEDLGNILMLTKSHEGFVNLISLVSNGFKENQSGKANR 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + ++ L   G+    +L  G    I        S      +    + FG+ +YV LQRH 
Sbjct: 114  VDVNSLLRQGSGL--LLLTGGHDDILARALLGKSAGM-GAINAILETFGNDVYVELQRHG 170

Query: 191  GYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +   E  ++  AY   +PLVATN+  F+   D++AHDVL  ++  T + Q+ R R+T
Sbjct: 171  LESQKEVEGLLIGFAYERNIPLVATNDVFFVRRGDFQAHDVLSCISDGTYIVQEGRRRLT 230

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +HY K   EM  +FSD+PEA+ NT  IARRC+FI ++  P LP F         + E  
Sbjct: 231  EEHYFKTSKEMFELFSDIPEAVRNTPMIARRCAFIAEIRKPSLPHFPC----SGGRTEAE 286

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL   A  GLE RL    I  G   + Y  RL +EL ++  M +SGYFLIVADFI W+KK
Sbjct: 287  ELTECAKTGLEARLRAKNID-GDKKEQYHNRLQYELGIVISMDYSGYFLIVADFICWSKK 345

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNP+R+SMPDFDIDFCQ++RD+
Sbjct: 346  NDIMVGPGRGSGAGSLIAWSLGITDLDPIEFGLIFERFLNPERVSMPDFDIDFCQEKRDK 405

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI YV+ KYG   VA IITFG LQA+A LRDVGR +Q+PY+Q+D++CK+IP+DP  PV+L
Sbjct: 406  VIEYVREKYG--YVAHIITFGKLQARAVLRDVGRVMQIPYAQIDKICKMIPHDPVSPVTL 463

Query: 490  -QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +AI  D   +  + +D +V +L EIS KLEGLYRHAS HAAGIVI D+PL   VP+Y D
Sbjct: 464  SEAIEMDQNLKREQESDNTVAKLFEISLKLEGLYRHASVHAAGIVICDKPLEDFVPLYYD 523

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
                LP+TQ+NMK++EKAGL+KFDFLGL+TLT+L +    +  RGV ++LS +P DD +T
Sbjct: 524  QSCSLPITQYNMKYVEKAGLVKFDFLGLRTLTVLDQVRSLIQDRGVSIELSELPLDDGKT 583

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y +L+T  ++G+FQLES+GMR+A+  ++PD I+DIIAL+SLYRPGP++NI +Y  RK+G 
Sbjct: 584  YEMLSTGNSVGVFQLESAGMREAISKLRPDGIQDIIALISLYRPGPMNNIAIYIARKHGL 643

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EK   IHP+++ +LKET GVIIYQEQVM+IA++L+GYSL  AD+LRRAMGKKIKEEMDKQ
Sbjct: 644  EKPDYIHPMLEGVLKETFGVIIYQEQVMEIARILAGYSLGGADLLRRAMGKKIKEEMDKQ 703

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ F++GA KNGI +  A  IF+L+AKFA YGFNKSHAAAYA+IS+QTA++K +Y  EF 
Sbjct: 704  RQDFVNGAIKNGIDRGKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYLKANYTKEFF 763

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             ASM L++ + +K++  CQ AR   +Q++PP VN+  V F +  + I Y L A+K VG T
Sbjct: 764  TASMNLDIGDKDKLELLCQQARACGVQVLPPDVNSSGVLFTISGDAIKYGLGALKNVGQT 823

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             AR ++   A K +  + DF   + +K   +RV+ESL+ +GALD    +R QL +SL  I
Sbjct: 824  AAREVVPE-AGKKYSDIWDFARNMRAKWACKRVMESLIKSGALDSIHPNRRQLFESLGTI 882

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                     +  +K  N+F   +G       L +    +   + E+E   LGFY   HPL
Sbjct: 883  LDVIDDTRNSAESKQFNLFGITEG-----HKLLEVEDWSEEEKIEHEFSTLGFYLRYHPL 937

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
              Y+ ILR +G+K   E   +      + A ++ S  + ++    R   V  S+P    +
Sbjct: 938  AKYEGILRGLGVKFVSECQDSSESGVKKSAGVISSV-RIRSANKERFAVVRISDPYGVND 996

Query: 1029 ANFF 1032
              F+
Sbjct: 997  VAFY 1000


>gi|229032249|ref|ZP_04188222.1| DNA polymerase III subunit alpha [Bacillus cereus AH1271]
 gi|228729029|gb|EEL80032.1| DNA polymerase III subunit alpha [Bacillus cereus AH1271]
          Length = 1105

 Score =  977 bits (2527), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1025 (36%), Positives = 585/1025 (57%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPIIG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  +++ K              +VLL     GYQ L+++ S +      K    I 
Sbjct: 62   LTASIFSEEDEK-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEGIP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    +    AE+    ++ +F    Y++LQ H   
Sbjct: 107  KKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESEAEELARMYQSMF-GNFYMSLQHHAIQ 164

Query: 193  DRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            D     + +        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  D
Sbjct: 165  DELLLQEKLPAFMSRINVPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 252  HY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             Y LK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F     +      +  
Sbjct: 225  QYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHINQLPKFPVPANE----TNDMY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL+ R        G   + + +RL+ ELNVI+ M FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLQKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK-D 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 453  AYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+  + G ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVEKTGTQIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    
Sbjct: 812  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGISRTNLWKSLKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA               A + G    K    +    +   +   E+  LGFY S +P  
Sbjct: 872  EYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|262372309|ref|ZP_06065588.1| DNA polymerase subunit III [Acinetobacter junii SH205]
 gi|262312334|gb|EEY93419.1| DNA polymerase subunit III [Acinetobacter junii SH205]
          Length = 1187

 Score =  977 bits (2526), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1043 (36%), Positives = 576/1043 (55%), Gaps = 55/1043 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++    A++ PA+AITD +NL +A++F       GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRIPDLVKAAVAEEMPALAITDLSNLHAAVKFYGACLGKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  +                         LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   MGSVI---------------RLNDAEHRATLLAMSNTGWRNLTEIVSRGFIEGQQLSVPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + +I+L  G    + +    ++ Q AE  L  +   FG+R+Y++L R  
Sbjct: 108  VQKEWVLEQAEDLIILL--GQHSDVGKMLCSSNPQKAEPLLEDWISKFGNRVYLSLTRTD 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
            R  +     + V+LA  +++ +VA N+  F+ ++D+ AH+  + +A   V+    RP   
Sbjct: 166  RVGEEDFIVEAVKLAAKYQIGVVAHNDIHFIEQDDFYAHEARVCIADGYVLGDDKRPKPY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ Y K   +M  +FSD+P A+ENT +IA+RC+  LQ+    LP F   +        +
Sbjct: 226  SPEQYFKTAEQMSELFSDIPSAIENTYQIAKRCNVALQLGTYFLPDFPIPDG----YTID 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQ------DYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE RL                   Y +R+ +E+++I +M F GYFLIV D
Sbjct: 282  TYFEHLSREGLEERLNHLYPIDERDEDWPDIRKPYDERIKYEVDIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIEYVAQNYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            P      QAI  + + ++               + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLKQAIELEPQLKDIVTNPANPDHDDAAEIWEMALKLEGITRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GV 594
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +R    V
Sbjct: 522  KITDYSAVICDPDGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIQSDV 581

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             ++++ +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLNIANVPLDDKDAYLVFAEANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  + +R +G E    +HPL++ +L+ T G+++YQEQVMQ AQ  +GY+L  AD+LR
Sbjct: 642  MDLIPDFIHRMHGGE-FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ FI GA++  I +  A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFIKGAAEKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TAW+K HYP EF+AA M+ EM N + +     D R   ++++PPSVN     F   D R
Sbjct: 761  HTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNKLEVLPPSVNMSLYHFHAIDER 820

Query: 835  IY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               Y L AIKGVG    + ++++   D P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEQAMQSVIDSRIKDGPYKDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR     ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERSSLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK----QQKK 1008
            + E+  LG Y +GHP+DVY+  L+        E   T RG     A +V+       +  
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRSELKAFIPAKLNEVTPTRRGVTTVFAGLVLDVANFPNRIM 998

Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031
                     +T  +     E + 
Sbjct: 999  ---------ITLDDGTARIEVSC 1012


>gi|300771841|ref|ZP_07081712.1| DNA-directed DNA polymerase III alpha subunit [Sphingobacterium
            spiritivorum ATCC 33861]
 gi|300761227|gb|EFK58052.1| DNA-directed DNA polymerase III alpha subunit [Sphingobacterium
            spiritivorum ATCC 33861]
          Length = 1474

 Score =  977 bits (2526), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/1099 (31%), Positives = 552/1099 (50%), Gaps = 92/1099 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            F HL  HS +S+L+  +S+  ++D    ++ PA+A+TD  N+  A  F  +         
Sbjct: 259  FAHLHNHSQFSVLQSTISIGGLVDAAVKNKMPAVALTDHGNMMGAFHFVSRVLGHNKDAE 318

Query: 67   -----------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                             ++PI+GC+  I         +  K+       +V L     GY
Sbjct: 319  TKNQELIDNGEAPTETIVKPIVGCEFFIC------EDHLDKSRKDNGYQVVFLAKNKNGY 372

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L ++ S  Y         RI    +++   E +I+L+G   G I           AE+
Sbjct: 373  HNLAKMSSVAYTKG-FYYVPRIDKKVVEQY-KEDIIVLSGNLQGEIPNKILNIGENQAEE 430

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             L+ +K+ FG+  Y+ + RH   D  R ++ +V LA  H + ++ TNN+ ++++ D  AH
Sbjct: 431  ALIWWKEQFGEDFYIEVMRHGQEDENRVNETLVSLARRHGVKVIGTNNTYYVNKADAHAH 490

Query: 229  DVLMAVAHSTVVSQKDRPR-------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            D+L+ V     +S                ++Y K+ SEM  +F+DLPEA+ N  EI  + 
Sbjct: 491  DILLCVKDGEKLSTPKGRGRGFRFGLPNQEYYFKSASEMKKVFADLPEAIVNIQEIIDKV 550

Query: 282  SFILQVHAPILPRFIEKE--------CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
                     +LP+F   E         D  ++ E   L +    G E R A+        
Sbjct: 551  EIFKLNRDVLLPKFEIPEQFQVQEDNEDGGKRGENKYLAHLTYVGAEKRYAE-------I 603

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              D R+RLDFEL  I +  + GYFLIV DFI  A+   + VGPGRGS AGS  AY L IT
Sbjct: 604  TDDIRERLDFELATIEKTGYPGYFLIVQDFIAEARNMGVSVGPGRGSAAGSAVAYCLGIT 663

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            +IDP+++ LLFERFLNPDR+SMPD DIDF  + R +V++YV +KYG  +VAQIIT+G++ 
Sbjct: 664  NIDPIQYDLLFERFLNPDRVSMPDIDIDFDDEGRGKVMQYVIDKYGASQVAQIITYGTMA 723

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV---SLQAIADDSRFREARLADPSV-- 508
            AK++++D  R L +P S  + + KLIPN     +     +A+ +  R  E       +  
Sbjct: 724  AKSSIKDTARVLDLPLSDANEIAKLIPNLKLSKIFNMDEKALKEALRAEELEAVHKLISL 783

Query: 509  -------DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
                      ++ ++ LEG  R+   HA G++I    ++  VP+     SDL VTQF+  
Sbjct: 784  ADGAGLEAETIKQARVLEGSMRNTGIHACGVIITPDDITNFVPVSLAKDSDLYVTQFDNS 843

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGI 620
             +E AGL+K DFLGLKTLTL++ ++  +  R  + +D    P DD  TY L     T+G+
Sbjct: 844  VVESAGLLKMDFLGLKTLTLIKDTVANVKLRHNLDLDPDNFPIDDQLTYELFQRGETIGV 903

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RK+G E IV      + 
Sbjct: 904  FQYESPGMQKHMKDLKPTVFADLIAMNALYRPGPMEYIPSFIKRKHGIEPIVYDLDACEE 963

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
             LKET G+ +YQEQVM ++Q L+G+S  +ADVLR+AMGKK K  +DK K +F+S A + G
Sbjct: 964  YLKETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKQKAVLDKMKPKFVSQAVEKG 1023

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             +  +   I+     FA Y FNKSH+  YA ++YQTA++K H+P E++AA ++  M++++
Sbjct: 1024 HNAKVLEKIWTDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHFPAEYMAAVLSNNMNDIK 1083

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD 859
            ++  F ++ R+  ++++ P VN     F V     I + + A+KGVG      I++    
Sbjct: 1084 QVTFFMEECRRMGLEVLGPDVNESHYKFTVNDRGAIRFGMGAVKGVGAGAVDTIVQTREG 1143

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKY 911
             P+ S+ D   R+D +  N++  ESL +AG  D F    R Q           L+   ++
Sbjct: 1144 NPYKSVFDMAKRIDLRAANKKAFESLAYAGGFDSFKETHRAQYFHVDGDNSTGLEKAVRF 1203

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             Q  ++N ++   ++F         +  L          + + E+ V+G Y + HPLD Y
Sbjct: 1204 GQRHKENESSAQASLFGGGGSAELPEPVLAPCPQWGLIEKLKYEKDVIGIYLTSHPLDNY 1263

Query: 972  KPILRKMGIKGYEESV------------------ATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            K  ++        E                      I+   + +  ++ +   + ++ G 
Sbjct: 1264 KFEIKHFCQNNVSELQLINKVKASEVEEDVLLEFNKIKNKEVIIGGIIAAANHRVSKNGK 1323

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
              G +   + +  +E   F
Sbjct: 1324 PFGILVIEDYSDSFEMMVF 1342


>gi|171463884|ref|YP_001797997.1| DNA polymerase III, alpha subunit [Polynucleobacter necessarius
            subsp. necessarius STIR1]
 gi|171193422|gb|ACB44383.1| DNA polymerase III, alpha subunit [Polynucleobacter necessarius
            subsp. necessarius STIR1]
          Length = 1205

 Score =  977 bits (2526), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1071 (36%), Positives = 584/1071 (54%), Gaps = 67/1071 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + +++ +     D   A+AITD +NLF  + F   A ++GI+
Sbjct: 4    PRFVHLRVHSEFSITDGVVRIDDAVAAAVKDGMGALAITDLSNLFGLVRFYTAARSSGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  + I                     ++LLV    GY  L EL+SR  L +Q +  
Sbjct: 64   PITGADVWISNP----------QDPDQPHRLLLLVQNHSGYLNLCELLSRASLDNQSRGR 113

Query: 129  VRICLSWLQEIG------------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
              +  +W  E                GLI L+G   G +  A     +  A+     ++K
Sbjct: 114  AEVDSAWFSEPAAKTEDKAAKRTLPYGLIALSGARMGEVGAALLAGQADQAKIVARRYEK 173

Query: 177  LFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            LF    Y+ +QR     D         LA   +LP+VAT+   F+   D+ AH+  + +A
Sbjct: 174  LFPKSFYIEVQRGGNPQDERHLQLACHLASELDLPVVATHPVQFMQRSDFTAHEARVCIA 233

Query: 236  HSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
               ++    R  +   + Y   + EM   F+DLP AL N+VEIA+RC+  L +  P LP 
Sbjct: 234  EGELLGNPRRTKKFNEEQYFLTQEEMEKRFADLPVALANSVEIAKRCNLSLVLGQPRLPD 293

Query: 295  FIEKECDDIQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            F       +    +  L  ++  GLE    R       +      Y +RL FE+  I++M
Sbjct: 294  FPTPPGITL----DEYLLAQSEVGLERHMERNFPDPEERAKEMARYHERLVFEVKTISQM 349

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFLIVADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+
Sbjct: 350  GFPGYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPE 409

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPDFDIDFCQ  RD VI+YV++KYG + V+QI TFG++ A+AA+RDVGR L+  Y+ 
Sbjct: 410  RVSMPDFDIDFCQHGRDRVIQYVKDKYGKDAVSQIATFGTMAARAAIRDVGRVLEQGYNF 469

Query: 472  VDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            VD + KL+PN P   ++++ A   + +  E    +  V +LL ++Q+LEG+ R+   HA 
Sbjct: 470  VDGIAKLVPNKPGQYMTIEMAKKKEKQLAEREKNEDEVRQLLSLAQQLEGMTRNVGMHAG 529

Query: 531  GIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            G++I    L+   P+Y    +D  S   ++QF+   +E  GL+KFDFLGL TLT+L  + 
Sbjct: 530  GVLIAPGRLTDFCPLYTQESKDQDSSSVISQFDKDDVEAVGLVKFDFLGLTTLTILAAAE 589

Query: 587  DFLAQ---RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
             ++          ++  IP DD + + +L    T+ +FQLES GM+  L   +PD  EDI
Sbjct: 590  RWIKALHADRRDWNIGEIPLDDEKAFDVLKRANTVAVFQLESRGMQGMLREAKPDRFEDI 649

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            IALV+LYRPGP+D I  +  RK+G++K+    P I+P+L+ET G+++YQEQVMQ+AQ++ 
Sbjct: 650  IALVALYRPGPMDLIPDFIERKHGRQKVEYPDPRIEPVLRETYGIMVYQEQVMQMAQMIG 709

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GYSL  AD+LRRAMGKK  EEM + ++ F  GA   GIS+  A  I++L+ +FA YGFNK
Sbjct: 710  GYSLGGADMLRRAMGKKKPEEMAQHRKIFSDGAKAGGISEGKANEIYDLMERFAGYGFNK 769

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAAAYA+++YQTAW+K +YP EF+AA+++L MD+ +K+K    D    NI++  P +NT
Sbjct: 770  SHAAAYALLAYQTAWLKAYYPAEFMAANLSLAMDDTDKVKILYDDCLVNNIRVFSPDINT 829

Query: 824  PCVDFKV----------GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRV 872
               +F              + + Y L A++G G      I++A     PF  L DFC+RV
Sbjct: 830  GVYEFTPLRAPDAAPDSPISHVRYGLGAVRGTGEAAIESIVKARETGGPFKDLFDFCARV 889

Query: 873  DSKKLNRRVLESLVFAGALDCF-------GYS----RMQLLQSLDNIQKYAQWVEKNRTN 921
            D +++NRR +E+L+ AGA D         G +    R  LL SL    +     +   + 
Sbjct: 890  DRRQVNRRAIEALMRAGAFDDLYRDSVPAGGNLYDIRSTLLASLARAIE--AAEQAEASI 947

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
               ++F            L +  V +   R + E+  LG   +GH  D Y+        +
Sbjct: 948  YQVSLFEVAGEENRHLPELVREPVWSEKKRLQEEKTALGLCLTGHMFDAYRDETSHFIRQ 1007

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +      G +  +A ++ S +    ++G R+   T  +     E   +
Sbjct: 1008 PLSKVTE---GKDQLIAGIITSARMLTGQRG-RMMIATIDDGTAALEVTLY 1054


>gi|169629781|ref|YP_001703430.1| DNA polymerase III subunit alpha [Mycobacterium abscessus ATCC 19977]
 gi|169241748|emb|CAM62776.1| DNA polymerase III alpha subunit [Mycobacterium abscessus]
          Length = 1185

 Score =  977 bits (2526), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/1069 (30%), Positives = 523/1069 (48%), Gaps = 49/1069 (4%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              + SFVHL  H+ YS+L+GA  +  +L ++      A+ +TD  N++ A EF   A A 
Sbjct: 3    SSNSSFVHLHNHTEYSMLDGAAKIKPMLAEVERLGMSAVGMTDHGNMYGASEFYNVAAAT 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            G++PIIG +  I                       +   +   + ++   A G + L +L
Sbjct: 63   GVKPIIGIEAYIAPASRFDTKRVFWGDPGQKSDDVSGSGSYTHMTMVAENATGLRNLFKL 122

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S      Q  +  R+    + E    G+I  TG  SG +           A      ++
Sbjct: 123  SSLASFEGQLGKWARMDADLIAE-HASGIIATTGCPSGEVQTRLRLGQESEALAAAAKWQ 181

Query: 176  KLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +F  D  ++ L  H    +R     ++++     +P +ATN+  +++++    H+ L+ 
Sbjct: 182  DIFGKDNFFLELMDHGLSIERRVREGLLEVGKKLGIPPLATNDCHYVTKDHAHNHEALLC 241

Query: 234  VAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVH--A 289
            V     +S   R +   D +YLK  SEM  ++ D +P A +NT+ IA R      V    
Sbjct: 242  VQTGKTLSDPTRFKFDGDGYYLKPASEMRDLWDDAVPGACDNTLLIAERVQSYEDVWNFK 301

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +P F   E +D    +++ LR +   GLE R        G    +Y  R  +EL+VI 
Sbjct: 302  DRMPIFPVPEGED----QDSWLRKEVDRGLERRFEGVP---GGVPDEYFTRAHYELDVIK 354

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +  F  YFL+V D +  AK+  I VGPGRGS AGS+ AYAL IT+IDP+   LLFERFLN
Sbjct: 355  QKGFPAYFLVVGDLVSHAKEVGIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLN 414

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467
            P+R S PD DIDF   RR E++RY   K+G +RVAQ+ITFG+++ KAAL+D  R    Q 
Sbjct: 415  PERPSAPDIDIDFDDRRRGEMVRYATEKWGSDRVAQVITFGTIKTKAALKDSARIHYGQP 474

Query: 468  PYSQVDRLCKL---------IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
             ++  DR+ K          IP         +   + +  R     DP V  + + +  L
Sbjct: 475  GFAIADRITKALPPPIMAKDIPVWGITNPEHERYKEAAEVRTLIDTDPDVRNIYQTALGL 534

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R+A  HA  +++   PL+  +P+++  +    +T ++    E  GL+K DFLGL+ 
Sbjct: 535  EGLIRNAGVHACAVIMSSEPLTDAIPLWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRN 594

Query: 579  LTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  +LD +   RG+ +DL  +P DD  TY LL+   TLG+FQL+   MR  L  MQP
Sbjct: 595  LTVIGDALDNIKANRGIDLDLDHLPLDDPATYELLSRGDTLGVFQLDGGPMRDLLRRMQP 654

Query: 638  DCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIY 691
                DI+A+++LYRPGP+       Y +RKNG++ I  IHP ++     +L ET G+I+Y
Sbjct: 655  TGFNDIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKDILAETFGLIVY 714

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQ+M IAQ ++ YS+ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++
Sbjct: 715  QEQIMFIAQKVASYSMGKADALRKAMGKKKLEVLEAEYKGFYEGMTNNGFSEKAVKALWD 774

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  FA Y FNKSHAA Y ++S+ TA++K +YP E++A  +T   D+ +K   +  D R+
Sbjct: 775  TILPFAGYAFNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRR 834

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
              I ++PP VN    +F      I Y L  ++ VG    + ++    +   F    D+  
Sbjct: 835  LGITVLPPDVNESVHNFASVGEDIRYGLGGVRNVGANVVQSLIATREEKGAFTDFSDYLH 894

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            ++D    N++V ESLV AGA D  G+ R  L     +        +K       ++F   
Sbjct: 895  KIDIAACNKKVTESLVKAGAFDSLGHPRKGLFLVQSDAVDSVLGTKKAEAMGQFDLFGGG 954

Query: 931  KGTFSDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
                     +              +   E+ +LG Y SGHPL+    +L +         
Sbjct: 955  GEDSVPASDIFAIKVPDDEWEEKHKLALEREMLGLYVSGHPLNGVAHLLSRQTDTQIPAI 1014

Query: 987  V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +         +++  ++ S  ++  + G         +     E  FFP
Sbjct: 1015 LDGEVANDAVVKVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVLFFP 1063


>gi|330950665|gb|EGH50925.1| DNA polymerase III subunit alpha [Pseudomonas syringae Cit 7]
          Length = 939

 Score =  977 bits (2526), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/952 (41%), Positives = 562/952 (59%), Gaps = 51/952 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4   SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64  ICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
            I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+ +QR 
Sbjct: 114 VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
           +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173 NRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHN 232

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233 YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308 ENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
           +   R  +  GLE RLA               Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289 DEYFRKVSFDGLEERLAVLLPKDTTEDYEARRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469 VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVD 597
            P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +         +D
Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588 IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658 IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648 GMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
           D+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708 DMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
           ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT    F V
Sbjct: 768 LVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827

Query: 831 -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ L+ +G
Sbjct: 828 SDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSG 887

Query: 890 ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
           ALD  G                +R  LL +L+   + A+   ++R + H ++
Sbjct: 888 ALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDL 939


>gi|229186859|ref|ZP_04314014.1| DNA polymerase III subunit alpha [Bacillus cereus BGSC 6E1]
 gi|228596596|gb|EEK54261.1| DNA polymerase III subunit alpha [Bacillus cereus BGSC 6E1]
          Length = 1104

 Score =  977 bits (2526), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1025 (36%), Positives = 582/1025 (56%), Gaps = 50/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PIIG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++                 +VLL     GYQ L+++ S +      K    I 
Sbjct: 62   LTASIFSEEE------------KSYPLVLLAENEIGYQNLLKISSSIMT----KSKEGIP 105

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    +    AE+    ++ +F    Y++LQ H   
Sbjct: 106  KKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMF-GNFYMSLQHHAIQ 163

Query: 193  DRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            D     + +        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  D
Sbjct: 164  DELLLQEKLPAFINRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 223

Query: 252  HY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             Y LK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F     +      +  
Sbjct: 224  QYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVPSNE----TNDMY 279

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL+ R        G   + +  RL+ EL+VI+ M FS YFLIV DF+++A +N
Sbjct: 280  LRRVCEEGLQKRY-------GTPKEVHINRLNHELSVISSMGFSDYFLIVWDFMKYAHEN 332

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 333  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 392

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 393  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK-D 451

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 452  AYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 510

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +T+
Sbjct: 511  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIRFIVQKTGKEIDIRNLPLQDEKTF 570

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 571  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 630

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 631  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 690

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 691  KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 750

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 751  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 810

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    
Sbjct: 811  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGAL 870

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA               A + G    K    +    +   +   E+ VLGFY S +P  
Sbjct: 871  EYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 917

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 918  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 975

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 976  AVLFP 980


>gi|87306887|ref|ZP_01089033.1| DNA polymerase III alpha subunit [Blastopirellula marina DSM 3645]
 gi|87290260|gb|EAQ82148.1| DNA polymerase III alpha subunit [Blastopirellula marina DSM 3645]
          Length = 1181

 Score =  977 bits (2526), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1051 (33%), Positives = 564/1051 (53%), Gaps = 38/1051 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YSLL+GA S+  ++ +       A+AITD  NL  AL+F +   AA I P
Sbjct: 5    RFVHLHCHTHYSLLDGAGSIPRLVGRAKDHGMNALAITDHGNLHGALQFYRACKAAEINP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG +  I      + +   +    +   + LL     G++ L++L S  YL        
Sbjct: 65   VIGYEAYIAPGSRFEKSGSQR---DSNYHLTLLAQNKIGFRNLVKLSSAAYLEG-FYFKP 120

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR-----LLTFKKLFGDRLYV 184
            RI    L++  +EG+I L+G  S    +     +S    ++        F+++F DR ++
Sbjct: 121  RIDKELLEKY-SEGIICLSGCVSSEFSKTILRGTSTEELEKEGANVASWFQRVFKDRYFI 179

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +  +     R +    V +A    +PLVAT+++ ++ ++D EA DV++ +      +  
Sbjct: 180  EIMNNGLDIQRMQLEGAVDIANKIGVPLVATSDTHYVDQDDAEAQDVMLCINTGKFRTDT 239

Query: 244  DRPRVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +R R+  D +  +++ +M + F  L +A+  + EIA      L++     P +       
Sbjct: 240  NRMRMENDQFFLRSQEQMYADFPRLEDAVARSQEIADTVDLDLELGKRHFPTYTLPP--- 296

Query: 303  IQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +K  +  LR   + GL+ R    +  +  G  ++    RLD EL VI+R+ F  YFLIV
Sbjct: 297  -EKTADGYLRELCIQGLKERYEGNEEMLPGGELSEVVMARLDRELGVISRLGFPNYFLIV 355

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DF+  A+K NIP    RGSG G++  YAL ++ + P+++ LLFERFL+ +R+  PD DI
Sbjct: 356  WDFVVEARKQNIP-ATARGSGVGAIVCYALYMSHVCPIKYDLLFERFLDENRLEAPDIDI 414

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF ++RR  VIRYV++KYG + VAQI TFG+L A+AA++DVGRAL +P  +V+ +  ++P
Sbjct: 415  DFDKERRGLVIRYVKDKYGEDNVAQIGTFGTLAARAAIKDVGRALGLPLDRVNAITGMVP 474

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  +   AI      ++A   D     +L ++ K+EGL R+  THAA +VI DRPL+
Sbjct: 475  ETLGIKLKT-AIETSEELKQAYENDGEAREVLSLAMKIEGLARNVGTHAAAVVIADRPLT 533

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
            + VP+ R    +  +TQ++M  +E AGL+K DFLGL+ LT+L+ ++D +  R     D+ 
Sbjct: 534  EYVPLCRVTGKEDLITQWSMNDVEDAGLLKMDFLGLRNLTILRNAIDLIETREGKPFDIH 593

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P DD ET+ LL    T G+FQLES G+R  L  M+PD   DIIA  +LYRPGP++  +
Sbjct: 594  KMPLDDEETFALLRRGETKGVFQLESGGIRDLLRRMKPDSFLDIIATNALYRPGPLEGGM 653

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            V  Y   KNG++     HP+++ +L+ET GV++YQEQVM+I   L    L++A    +A+
Sbjct: 654  VDEYIEVKNGRKAAEYKHPVLEKILEETNGVMVYQEQVMRILNQLGDIPLAKAYTCIKAI 713

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             KK +  + + +E+F+ GA + G++K  A   +E++ KFA YGFNKSH+ AYA+++YQTA
Sbjct: 714  SKKKESLIQQNREQFMIGAVEKGLTKKEAEEFWEMIVKFAGYGFNKSHSTAYALVAYQTA 773

Query: 778  WMKTHYPVEFLAASMTLEMDN-----VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            ++KTHYP EF+AA ++ ++        + + +  +D+ +  I ++ P VNT  V F V D
Sbjct: 774  YLKTHYPKEFMAALLSGDISGRNFKTKDALVEHMEDSERMEIDVVAPDVNTSDVQFAVVD 833

Query: 833  NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             +I ++L+AIKG G   A  I+ A   D PF  + DFC RVD+ + NR  +E+L+ AGA 
Sbjct: 834  GKIPFALSAIKGCGGGAAEAIVAARRKDGPFTDIFDFCERVDASQCNRAAIETLIKAGAF 893

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVENS 948
            D    +R QL   LD   +       +R    +N+FA      G  S  + L      N 
Sbjct: 894  DSMSTNRAQLSSVLDKAIQSGAAALADRKAGQKNLFAAMEEASGAASKAVKLPDVEEWNE 953

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              +   E+ VLGF+ + HPL  Y             +        ++ +  M+ S +   
Sbjct: 954  REKLLYEKEVLGFFLTSHPLAEYGQSFAIYCTHTTTDIPQMKDKQDVVMGGMITSIKLAH 1013

Query: 1009 TR------KGSRIGWVTFSEPAKEYEANFFP 1033
            T+        ++       +         +P
Sbjct: 1014 TKRARPGSNNTKYANFDLEDVNGAIRCIMWP 1044


>gi|317129921|ref|YP_004096203.1| DNA polymerase III subunit alpha [Bacillus cellulosilyticus DSM 2522]
 gi|315474869|gb|ADU31472.1| DNA polymerase III, alpha subunit [Bacillus cellulosilyticus DSM
            2522]
          Length = 1128

 Score =  977 bits (2525), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1029 (34%), Positives = 578/1029 (56%), Gaps = 34/1029 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL     L  ++ +       A+AITD + ++  + F +      I+P
Sbjct: 2    SFVHLHVHSEYSLLRSTGKLEELVKQAKHLGYEALAITDIDAMYGVIPFYKACLKNNIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG          L               ++ L    EGYQ LI L +R           
Sbjct: 62   IIGV--------ELAYVKNQDEVKKDHHRLLFLAENNEGYQSLIRLTTRAQEKSSSFG-P 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             +    LQ   + G+I ++  + G + +  +      A +     + +F  + +++ LQ 
Sbjct: 113  YVTYEELQ-ANSNGVIAISPFAEGLVQQYIYDKQDASALQHFEWLQSIFGKENVFLELQN 171

Query: 189  H-RGYDRYRESQVVQL--AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            H R  +R +   +          + ++A+N+  F  +E ++AH  + ++     + +   
Sbjct: 172  HWRQEEREKLLAISNWLKGKEDAIRVIASNHIHFTHKEQHDAHRAIQSIRLGIKLDELPH 231

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               + ++YLK+  EM  +F    EA  NT+ +A +C+  +++   ILP F        + 
Sbjct: 232  DYSSSEYYLKSIDEMHHLFKKDGEASRNTLRVADKCNVKIELGNMILPHFPLPN----ET 287

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 LR     G++ R           +++  +RLD+EL VI+ MK+  YFLIVADF++
Sbjct: 288  TATEYLRELCYKGIQERYEN-------PSEETWKRLDYELEVISEMKYEDYFLIVADFMR 340

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A +  I  GPGRGS AGS+ AY L IT++DP+++ L+FERFLN +R+SMPD DIDF  +
Sbjct: 341  YAHEKKILTGPGRGSSAGSIVAYVLKITNVDPMKYGLIFERFLNRERISMPDIDIDFPDN 400

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVIRYV+ KYG   VAQIITFG+L AKAA+RDVGR L +    +D++ K IP+ P  
Sbjct: 401  RRDEVIRYVKEKYGRTHVAQIITFGTLAAKAAIRDVGRVLGIELPIIDKISKSIPSRPNI 460

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +   A+ + +  +    ++  V  L  I++++EGL RH+S HAAGIV+   PL+ +VP+
Sbjct: 461  TLE-NALKESTVLQGMIESEEKVAELFTIAKEVEGLPRHSSIHAAGIVMSKEPLTNVVPL 519

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604
                  ++ +TQF M  IE  GL+K DFLGL+ L+ +++ L  +  Q+ + ++L+ IPF 
Sbjct: 520  QIG-NDEMYLTQFPMGDIEDIGLLKMDFLGLRNLSFIEQILKLIHNQQHIDIELNNIPFH 578

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  T+ LL    T G+FQLES+GMR  L+ ++P   EDI+A+ +LYRPGP++NI VY  R
Sbjct: 579  DVNTFTLLGKGQTSGVFQLESTGMRSVLKRLKPTEFEDIVAVNALYRPGPMENIPVYIRR 638

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             + +EK+   HP ++ +L  T GV+IYQEQ+MQIA  ++G+SL EAD+LRRA+GKK ++ 
Sbjct: 639  LHKEEKVTYPHPSLEEILSPTYGVLIYQEQIMQIASKMAGFSLGEADILRRAVGKKKRDV 698

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +++Q+++F+ G+   G  +  A  ++ L+ +FADYGF +SHA AY++I+Y  A++K +Y 
Sbjct: 699  LEEQRQKFVQGSISKGYDEKEANEMYNLILRFADYGFPRSHAVAYSIIAYYLAYLKANYQ 758

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A M   + + +K+ ++  +AR+  +++ PPS+      F + +  I+  L AIK 
Sbjct: 759  LEFMTALMGSVIHHHDKLGEYITEARRSGMKVHPPSIQQSEAQFSIKNKDIWIGLHAIKN 818

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG    + I+E  A   FDSL D C+R+ ++ L +R L++L+ AGALDC    R QLL S
Sbjct: 819  VGVQAVQAILEERAKSDFDSLFDLCARIPTRLLPKRALDALIVAGALDCIHDDRAQLLAS 878

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +D+  +Y + + +   N    +F  E      +         +S  R   E++VLGFY S
Sbjct: 879  VDDAIEYGEKLREQEKNAQTELFIEEVK----QPEYMSVPPLSSKDRLNFEKQVLGFYAS 934

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            GHP++    ++   G     +  A  + + +R+A M+   +  KT+KG ++ +   S+  
Sbjct: 935  GHPIESELALVESFGRLSVID--AKEKKSTLRIAGMIEDVKVIKTKKGDQMAFAQLSDET 992

Query: 1025 KEYEANFFP 1033
             E +  FFP
Sbjct: 993  GEIDLTFFP 1001


>gi|126663019|ref|ZP_01734017.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium BAL38]
 gi|126624677|gb|EAZ95367.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium BAL38]
          Length = 1512

 Score =  977 bits (2525), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1092 (32%), Positives = 567/1092 (51%), Gaps = 81/1092 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K  ++ HL  H+ +S+L+  +++N+++   A  + PA+A+TDT N+  A  F        
Sbjct: 257  KDAAYAHLHNHTQFSVLQSTIAINDLVKASAKFKMPAVAMTDTGNMMGAFHFVSAVMNHN 316

Query: 67   ---------------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                                 I+PI+GC      + N+   ++ KT       +VLL   
Sbjct: 317  KAAKAKIEAAIEAGEEPTEIEIKPIVGC------EFNICDDHKDKTKKDNGNQVVLLAKN 370

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
             +GY  L ++ S  Y  D      RI    + +   E +++L+G   G I          
Sbjct: 371  KKGYHNLAKMSSIAYT-DGFYYVPRIDRKIVAQY-KEDIMVLSGNLYGEIPSKILNVGES 428

Query: 166  VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEED 224
             AE+ L+ +K+ FG   Y+ L RH+  D  R +Q ++  A  H + L+ATNN+ ++++ED
Sbjct: 429  QAEEALIWWKEQFGSDFYLELMRHKQEDENRVNQTLIAFAKKHNVKLIATNNTYYVNKED 488

Query: 225  YEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
              AHD+L+ V      +                ++Y K+  EM  +F+DLPEA+ N  EI
Sbjct: 489  ANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSGDEMKQLFADLPEAIINIQEI 548

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQGAIA 329
              +          +LP+F   +  ++ ++ E+         LR+    G E R  +    
Sbjct: 549  IDKVEAYSLYRDVLLPKFKIPDEFEVPEDAEDGGVRGENNYLRHLTYLGAEKRYPE---- 604

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                  D ++RLDFEL  I+   + GYFLIV DFI  A+K ++ VGPGRGS AGS  AY 
Sbjct: 605  ---LTDDIKERLDFELLTISNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAAGSAVAYC 661

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L IT+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV NKYG  +VAQIIT+
Sbjct: 662  LGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGSNQVAQIITY 721

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLADP- 506
            G +  K+A+RD  R L +P  + DR+ KLIP       +L      D+S  ++A  ++  
Sbjct: 722  GKMATKSAIRDTARVLDLPLFEADRIAKLIPGMMPSKWNLARFLAEDESEVKKALRSEEF 781

Query: 507  -SVDRLLEIS-------------QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
              V  L+EI+             + LEG  R+   HA G++I    ++  VP+     SD
Sbjct: 782  DKVKELIEIANSEDLAGETIQQAKVLEGSMRNTGIHACGVIITPSDITNFVPVTTAKDSD 841

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611
            L VTQF+    E AGL+K DFLGLKTLTL++ ++  +  R G+ +D    P DD +TY L
Sbjct: 842  LYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRLGIDLDPDNFPIDDEKTYEL 901

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                 T+G+FQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RKNG+E+I
Sbjct: 902  FQRGETVGVFQYESPGMQKYMKDLKPTVFADLIAMNALYRPGPLEYIPSFVRRKNGEEEI 961

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
                   +  L ET G+ +YQEQVM ++Q L+G+S  +ADVLR+AMGKK  E ++K K +
Sbjct: 962  KYDLEACEEYLGETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKQIEVLNKMKPQ 1021

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            FI+ A++ G    +   I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA 
Sbjct: 1022 FINQAAEKGHDPVVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAV 1081

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTA 850
            ++  M++++++  F ++ ++  +Q++ P VN     F V +N  + + + A+KGVG    
Sbjct: 1082 LSNNMNDIKQVSFFMEECKRMGLQVLGPDVNESYYKFTVNENYAVRFGMGAVKGVGANAV 1141

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS----- 904
              I++   + P+ S+ D   ++D +  N++  ESL  AG  D F    R Q         
Sbjct: 1142 DTIVQNRKEAPYKSIFDVAKKIDLRAANKKAFESLALAGGFDGFTDTHRAQYFHHDGDGI 1201

Query: 905  --LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              L+   +Y    ++N  +   ++F         +  +      ++  +   E+ V+G Y
Sbjct: 1202 TFLEKAIRYGSKFQENENSSQVSLFGDASEVQIAEPIVPPCDDWSTMEKLAKEKEVVGIY 1261

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             SGHPLD YK  ++       E   +  +  G N+    +V + Q +  + G+  G    
Sbjct: 1262 ISGHPLDDYKYEMKYFCNAKLESLKSLEQHVGKNLSFGGIVTNVQHRTAKNGNGWGSFVL 1321

Query: 1021 SEPAKEYEANFF 1032
                + YE   F
Sbjct: 1322 EGYEESYEFRIF 1333


>gi|229198755|ref|ZP_04325451.1| DNA polymerase III subunit alpha [Bacillus cereus m1293]
 gi|228584688|gb|EEK42810.1| DNA polymerase III subunit alpha [Bacillus cereus m1293]
          Length = 1105

 Score =  977 bits (2525), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1025 (36%), Positives = 584/1025 (56%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PIIG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++  K              +VLL     GYQ L+++ S +      K    I 
Sbjct: 62   LTASIFSEEEEK-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEGIP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    +    AE+    ++ +F    Y++LQ H   
Sbjct: 107  KKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYQNMF-GSFYMSLQHHAIQ 164

Query: 193  DRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            D     + +        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  D
Sbjct: 165  DELLLQEKLPAFMNRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 252  HY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             Y LK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F     +      +  
Sbjct: 225  QYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVPSNE----TNDMY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL+ R        G   + + +RL+ ELNVI+ M FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLQKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK-D 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 453  AYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +I  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  QIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    
Sbjct: 812  VTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA               A + G    K    +    +   +   E+ VLGFY S +P  
Sbjct: 872  EYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPTLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|56416564|ref|YP_153638.1| DNA polymerase III alpha subunit [Anaplasma marginale str. St.
            Maries]
 gi|56387796|gb|AAV86383.1| DNA polymerase III alpha subunit [Anaplasma marginale str. St.
            Maries]
          Length = 1127

 Score =  977 bits (2525), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/1024 (45%), Positives = 654/1024 (63%), Gaps = 31/1024 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLLEG + + +++        PA+A+TD+ NLF +LEFS  A + G+QPI
Sbjct: 6    FVHLRTHSDYSLLEGMIKIESLVAMCVDQNMPAVALTDSGNLFGSLEFSDCAASFGVQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC + +                  + +I++L  + EG+  LI LVS  +  +Q  ++ R
Sbjct: 66   VGCNIMVH------------DAGEDLGNILMLTKSHEGFVNLISLVSNGFKENQSGKANR 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + ++ L   G+    +L  G    I        S      +    + FG+ +YV LQRH 
Sbjct: 114  VDVNSLLRQGSGL--LLLTGGHDDILARALLGKSAGM-GAINAILETFGNDVYVELQRHG 170

Query: 191  GYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +   E  ++  AY   +PLVATN+  F+   D++AHDVL  ++  T + Q+ R R+T
Sbjct: 171  LESQKEVEGLLIGFAYERNIPLVATNDVFFVRRGDFQAHDVLSCISDGTYIVQEGRRRLT 230

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +HY K   EM  +FSD+PEA+ NT  IARRC+FI ++  P LP F   +     + E  
Sbjct: 231  EEHYFKTSKEMFELFSDIPEAVRNTPMIARRCAFIAEIRKPSLPHFPCSDG----RTEAE 286

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL   A  GLE RL    I  G   + Y  RL +EL ++  M +SGYFLIVADFI W+KK
Sbjct: 287  ELTECAKTGLEARLRAKNID-GDKKEQYHNRLQYELGIVISMDYSGYFLIVADFICWSKK 345

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNP+R+SMPDFDIDFCQ++RD+
Sbjct: 346  NDIMVGPGRGSGAGSLIAWSLGITDLDPIEFGLIFERFLNPERVSMPDFDIDFCQEKRDK 405

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI YV+ KYG   VA IITFG LQA+A LRDVGR +Q+PY+Q+D++CK+IP+DP  PV+L
Sbjct: 406  VIEYVREKYG--YVAHIITFGKLQARAVLRDVGRVMQIPYAQIDKICKMIPHDPVSPVTL 463

Query: 490  -QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +AI  D   +  + +D +V +L EIS KLEGLYRHAS HAAGIVI D+PL   VP+Y D
Sbjct: 464  SEAIEMDQNLKREKESDNTVAKLFEISLKLEGLYRHASVHAAGIVICDKPLEDFVPLYYD 523

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
                LP+TQ+NMK++EKAGL+KFDFLGL+TLT+L +    +  RG  ++LS +P DD +T
Sbjct: 524  QSCSLPITQYNMKYVEKAGLVKFDFLGLRTLTVLDQVRSLIQDRGGSIELSELPLDDGKT 583

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y +L+T  ++G+FQLES+GMR+A+  ++PD I+DIIAL+SLYRPGP++NI +Y  RK+G 
Sbjct: 584  YEMLSTGNSVGVFQLESAGMREAISKLRPDGIQDIIALISLYRPGPMNNIAIYIARKHGL 643

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EK   IHP+++ +LKET GVIIYQEQVM+IA++L+GYSL  AD+LRRAMGKKIKEEMDKQ
Sbjct: 644  EKPDYIHPMLEGVLKETFGVIIYQEQVMEIARILAGYSLGGADLLRRAMGKKIKEEMDKQ 703

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ F++GA KNGI +  A  IF+L+AKFA YGFNKSHAAAYA+IS+QTA++K +Y  EF 
Sbjct: 704  RQDFVNGAIKNGIDRGKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYLKANYTKEFF 763

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             ASM L++ + +K++  CQ AR   +Q++PP VN+  V F +  + I Y L A+K VG T
Sbjct: 764  TASMNLDIGDKDKLELLCQQARACGVQVLPPDVNSSGVLFTISGDAIKYGLGALKNVGQT 823

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             AR ++   A K +  + DF   + +K   +RV+ESL+ +GALD    +R QL +SL  I
Sbjct: 824  AAREVVPE-AGKKYSDIWDFARNMRAKWACKRVMESLIKSGALDSIHPNRRQLFESLGTI 882

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                     +  +K  N+F   +G       L +    +   + E+E   LGFY   HPL
Sbjct: 883  LDVIDDTRNSAESKQFNLFGITEG-----HKLLEVEDWSEEEKIEHEFSTLGFYLRYHPL 937

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
              Y+ ILR +G+K   E   +      + A ++ S  + ++    R   V  S+P    +
Sbjct: 938  AKYEGILRGLGVKFVSECQDSSESGVKKSAGVISSV-RIRSANKERFAVVRISDPYGVND 996

Query: 1029 ANFF 1032
              F+
Sbjct: 997  VAFY 1000


>gi|15827612|ref|NP_301875.1| DNA polymerase III subunit alpha [Mycobacterium leprae TN]
 gi|221230089|ref|YP_002503505.1| DNA polymerase III subunit alpha [Mycobacterium leprae Br4923]
 gi|14194699|sp|Q9X7F0|DPO3A_MYCLE RecName: Full=DNA polymerase III subunit alpha
 gi|4539136|emb|CAB39586.1| putative DNA polymerase III alpha chain [Mycobacterium leprae]
 gi|13093163|emb|CAC31588.1| DNA polymerase III, [alpha] subunit [Mycobacterium leprae]
 gi|219933196|emb|CAR71302.1| DNA polymerase III, [alpha] subunit [Mycobacterium leprae Br4923]
          Length = 1177

 Score =  976 bits (2524), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/1067 (32%), Positives = 548/1067 (51%), Gaps = 50/1067 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S SFVHL  H+ YS+L+GA  +  +  ++   Q PA+ +TD  N+F A EF   A  
Sbjct: 1    MNQS-SFVHLHNHTEYSMLDGAAKITPMFAEVERLQMPAVGMTDHGNMFGASEFYNTAIK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AGI+PIIG +  I                       +       + ++   A G + L +
Sbjct: 60   AGIKPIIGVEAYIAPGSRFDTRRITWGDPSQKADDVSAGGAYTHLTMVAENAAGLRNLFK 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I+ TG  SG +         + A +    +
Sbjct: 120  LSSLASFEGQLSKWSRMDAELIGEYA-EGIIVTTGCPSGEVQTRLRLGHDREALESAAKW 178

Query: 175  KKL-FGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +++   D  ++ L  H    ++     ++ +     +P +ATN+  +++ +    H+ L+
Sbjct: 179  REIVGPDNYFLELMDHGLSIEQRVREGLLNIGRKLNIPPLATNDCHYVTRDAVHNHEALL 238

Query: 233  AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAP 290
             V     +S  +R +   D +YLK+ +EM  ++ D +P A ++T+ IA R      V  P
Sbjct: 239  CVQTGKTLSDPNRFKFHGDGYYLKSAAEMRQLWDDEVPGACDSTLLIAERVQSYADVWEP 298

Query: 291  IL--PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                P F       +  ++ + LR++  AGL+ R   G          Y +R  +E++VI
Sbjct: 299  RNRMPVFPVP----VGHDQASWLRHEVDAGLKRRFPDGP------PNGYVERAAYEIDVI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
                F  YFLIVAD +  A+   I VGPGRGS AGS+ AYAL ITDIDP+   LLFERFL
Sbjct: 349  CDKGFPAYFLIVADLVNHARSVGIRVGPGRGSAAGSLAAYALGITDIDPIPHGLLFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--Q 466
            NP+R SMPD DIDF   RR E++RY  +K+GH+RVAQ+ITFG+++ KAAL+D  R    Q
Sbjct: 409  NPERTSMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQ 468

Query: 467  MPYSQVDRLCKLIPN-DPAHPVSLQAIAD--DSRFREA------RLADPSVDRLLEISQK 517
              ++  DR+ K +P    A  + L  I D    RF+EA         D  V  + + ++ 
Sbjct: 469  PGFAMADRITKALPPAIMAKDIPLSGITDPAHERFKEAAEVRSLIETDSDVRIIYQTARG 528

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+
Sbjct: 529  LEGLIRNAGVHACAVILSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLR 588

Query: 578  TLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT++  +++ +   RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQ
Sbjct: 589  NLTIIGDAIENIKTNRGIDLDLESVPLDDQATYELLGRGDTLGVFQLDGGPMRDLLRRMQ 648

Query: 637  PDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVII 690
            P   EDI+A+++LYRPGP+       Y +RKN ++ I  IHP ++     +L ET G+I+
Sbjct: 649  PTGFEDIVAVLALYRPGPMGMNAHNDYADRKNNRQVIKPIHPELEEPLREILAETYGLIV 708

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQ+M+IAQ ++GYSL+ AD+LR+AMGKK +E ++K+ E F  G   NG S      ++
Sbjct: 709  YQEQIMRIAQKVAGYSLARADILRKAMGKKKREVLEKEFEGFSEGMQANGFSVHAIKALW 768

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            +++  FADY FNKSHAA Y +ISY TA++K ++  E++A  +T   D+ +K   +  D R
Sbjct: 769  DIILPFADYAFNKSHAAGYGLISYWTAYLKANFAGEYMAGLLTSVGDDKDKAAVYLADCR 828

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFC 869
            +F I ++PP VN   +DF      I Y L A++ VG      +++   A   F    D+ 
Sbjct: 829  KFGITVLPPDVNESVLDFASVGADIRYGLGAVRNVGANVVGSLIKTRNAKGKFADFSDYL 888

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            +++D    N++V ESL+ AGA D  G+SR  L     +        +K       ++F  
Sbjct: 889  NKIDITSCNKKVTESLIKAGAFDSLGHSRKGLFLVHADAVDSVLGTKKAEAIGQFDLFGG 948

Query: 930  EKGTFSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
              G      T++          +   E+ +LG Y SGHPL+    +L           + 
Sbjct: 949  TDGGTDAVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPTILD 1008

Query: 989  --TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    +R+  ++ +  ++  + G         +     E  FFP
Sbjct: 1009 GGVSNDTQVRVGGILAAVNRRVNKNGIPWASAQLDDLTGGIEVMFFP 1055


>gi|217970003|ref|YP_002355237.1| DNA polymerase III subunit alpha [Thauera sp. MZ1T]
 gi|217507330|gb|ACK54341.1| DNA polymerase III, alpha subunit [Thauera sp. MZ1T]
          Length = 1174

 Score =  976 bits (2524), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1046 (39%), Positives = 605/1046 (57%), Gaps = 40/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P FVHL++HS YS+ +G + L+  +   AAD  PA+ ++D  NLF  ++F + A   G
Sbjct: 16   SAPRFVHLRLHSEYSITDGIVQLDQAIAAAAADGMPALGVSDLANLFGMVKFYKGARGKG 75

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G    I          + +        ++L+     GY +L EL++R YL ++ +
Sbjct: 76   IKPIVGVDAWI----------RNEAERDKPQRVLLICKNRAGYGQLCELLTRAYLENKHR 125

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +   W +      L+ L+G  SG I  A    +  +AE+    + +LF D  Y+ +
Sbjct: 126  GRAEMRREWFENGAASALLCLSGAMSGDIGAAIAAGNLALAEQLAADWARLFPDAFYIEI 185

Query: 187  QR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            QR  H G + Y     V+LA    LP+VAT+   FL  ED++AH+  + +A   V++ K 
Sbjct: 186  QRAGHPGTESYIRH-AVELAGRLGLPVVATHPVQFLKREDFKAHEARVCIAQGYVLADKR 244

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RPR  T + YLK+++EM  +F+DLPEALEN VEIARRCS  +Q+    LP F   E   +
Sbjct: 245  RPRDFTEEQYLKSQAEMCELFADLPEALENAVEIARRCSLTVQLGKNFLPLFPTPEGMTL 304

Query: 304  QKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                ++ L  +A  GLE RLAQ       +      Y QRL FE + I +M F GYFLIV
Sbjct: 305  ----DDFLVAEAKKGLEERLAQLYPHPEERERQRPRYEQRLKFETDTIIQMGFPGYFLIV 360

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFIQW K N +PVGPGRGSGAGS+ AY+L ITDIDPL ++LLFERFLNP+R+SMPDFDI
Sbjct: 361  ADFIQWGKNNGVPVGPGRGSGAGSLVAYSLKITDIDPLEYALLFERFLNPERVSMPDFDI 420

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQD R  VI YV+ +YG + V+QI TFG++ +KA +RDVGR L +PY   DRL KLIP
Sbjct: 421  DFCQDNRYRVIEYVRERYGKDAVSQIATFGTMASKAVVRDVGRVLDLPYGLCDRLSKLIP 480

Query: 481  NDPAHPVSL-QAIADDSRFREA---RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
             + A PVSL +A   + +  E         SV  L  ++Q LEGL R+   HA G++I  
Sbjct: 481  IEGAKPVSLNKAYEMEPQIGEMMADGNDGESVRDLWSLAQPLEGLSRNVGMHAGGVLIAP 540

Query: 537  RPLSQLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
              L+   P+Y     D  PV+QF+   +E  GL+KFDFLGL+ LT+++ +L+++A+  G 
Sbjct: 541  GKLTDFCPLYIADGDDATPVSQFDKDDVEAVGLVKFDFLGLRNLTIIELALEYVARLEGS 600

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            + DL  + F+D   Y +L    T  IFQ+ES GM++ L+ + PD  EDIIA+++LYRPGP
Sbjct: 601  RPDLMSLGFEDPAAYQILKDANTTAIFQVESDGMKKLLKKLAPDRFEDIIAVLALYRPGP 660

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            + + +V  +  RK G+++I   HP +   L+ T GVI+YQEQVMQI+Q++ GY+L  AD+
Sbjct: 661  LGSGMVDDFILRKKGQQEIDYFHPDLKACLEPTYGVIVYQEQVMQISQIIGGYTLGGADM 720

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  +EM K +     GA + G    +A  +F+L+ KFA+YGFNKSH AAYAV+
Sbjct: 721  LRRAMGKKKADEMAKHRATIAEGAKQKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAVV 780

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVG 831
            +Y TAW+K H+   F+AA+M+ ++DN + +K F +D     I+++PP VN     F  V 
Sbjct: 781  TYHTAWLKAHHCAAFMAATMSSDLDNTDTVKIFYEDTLANGIKVLPPDVNASDYRFVPVD 840

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I Y L A+KGVG    R I+ A      F  L DFC RVD + +NRRV+E+L+ AGA
Sbjct: 841  RKIIRYGLGAVKGVGEPAVRAILAAHEKGGDFRDLFDFCERVDRRMVNRRVIEALIRAGA 900

Query: 891  LDCF----GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
            +D      G  R QL+ ++    + A+    N       +F              K    
Sbjct: 901  MDTLPGHKGLDRAQLMATVALAMEAAEQAAANAMQG--GLFDLMPEAAGAAPEFAKVRAW 958

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                R + E+  +GF+ SGHP + +KP +R+   +   +   +       LA +V+ ++ 
Sbjct: 959  TERERLKEEKLAIGFFLSGHPFNAFKPEVRRFVRRTLAQLEPSRD--ITMLAGVVMEQRT 1016

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            K   +G  + +V   +  +  E   +
Sbjct: 1017 KVGNRGK-MAFVLLDDGTEPREVTVY 1041


>gi|269469110|gb|EEZ80658.1| DNA polymerase III, alpha subunit [uncultured SUP05 cluster
            bacterium]
          Length = 1150

 Score =  976 bits (2524), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1048 (38%), Positives = 607/1048 (57%), Gaps = 48/1048 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  HS YS+    + +  ++DK       AIA+TD  NLF+A++F QK+ + GI+P
Sbjct: 5    DFVHLHCHSEYSVKNSLIRIPKLIDKTKDLGMKAIALTDVGNLFAAVKFYQKSISNGIKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G +L +                    S++LL    +GY  L EL+S  YL  Q  + V
Sbjct: 65   IFGAELTV-------------KDKAQNFSVLLLCQDRQGYANLSELISLSYLHGQSVEGV 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I    L     +GLIM+   +   +      N +  A +++  +  +F DR Y+++QR 
Sbjct: 112  SITTEQLVN-HHQGLIMIAPHTRSDVAHHLMANQALEAREKVQFWASVFTDRFYLSVQRT 170

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
             R  D       ++L     +PLVATN+  FL   DY+AH+  + ++   ++    R   
Sbjct: 171  GRANDEKYLHLCLELGLESGIPLVATNDVEFLVASDYQAHEARICISQGKLLDDARREKF 230

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA-PILPRFIEKECDDIQKE 306
             + + YLK+  EM ++FSDLP+ L N+VEIA+RC+   ++H    LP F   E   I + 
Sbjct: 231  YSAEQYLKSADEMAALFSDLPQLLANSVEIAKRCNLHFELHKKNYLPNFPVPEGLSIAQF 290

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E E    + AGL  RL +    +    + Y +RL FEL VI +M F GYFLIVADFI W
Sbjct: 291  FEQE----SKAGLGKRLEKIKANR----KIYDERLTFELGVIVQMDFPGYFLIVADFIAW 342

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            ++ N+IPVGPGRGSGAGS+ AYAL IT++DP++  LLFERFLNP+R+SMPDFDIDFC DR
Sbjct: 343  SRNNDIPVGPGRGSGAGSLVAYALGITNVDPIKHELLFERFLNPERVSMPDFDIDFCTDR 402

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV  KYG E+V+QIIT+G + AK  +RDVGR L  PY   DR+ K IPND    
Sbjct: 403  RDEVITYVAKKYGQEKVSQIITYGKMAAKGVVRDVGRVLGHPYGFSDRISKSIPNDLKIN 462

Query: 487  VS-------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            +S              +        ++   ++ SV  L+++S +LEGL R+  THA G++
Sbjct: 463  LSRALGIFDQKDSKEDKDKWYSEELKQRYDSEESVTALIDLSLELEGLVRNVGTHAGGVL 522

Query: 534  IGDRPLSQLVPMYRDV-RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            I    +S   P+Y+    SD  V+QF+MK +E  GL+KFDFLGL  LT++ K++  +  +
Sbjct: 523  IAPSKISDFCPIYKGPGESDGVVSQFDMKDVEALGLVKFDFLGLSNLTVIDKTVKMIHAK 582

Query: 593  ---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                  +D+  +  DD   Y LL    T GIFQLES GMR  L+ ++ D  EDI+A+++L
Sbjct: 583  GLSDELIDIDALSLDDKAVYKLLQRSDTTGIFQLESDGMRGYLKKLKADSFEDIVAMLAL 642

Query: 650  YRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            YRPGP+   +V  Y N K+G E     HP+++ +LK T GV +YQEQVM+ AQ+++GYSL
Sbjct: 643  YRPGPLGAGMVDDYINVKHG-EDAKYPHPMLEEILKPTNGVFLYQEQVMKSAQVMAGYSL 701

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKKI  EM+KQ++ F+ GA+K  I K  A  IF+L+ KF+ YGFNKSH+ 
Sbjct: 702  GGADLLRRAMGKKIASEMEKQRDVFVKGAAKKKIKKEKANEIFDLIDKFSGYGFNKSHSV 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA ISYQTAW+K HYP  F+A+ ++ +MD+ +KI     + +   + +  P+V     +
Sbjct: 762  AYAYISYQTAWLKAHYPAAFMASVLSDKMDDTDKIAFTIGEVQNMGLIVNGPNVCESDYE 821

Query: 828  FKVGDNRIY-YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F + D++   Y L AIKGVG    + ++ E  A   +  L +FC+R++ K LN+R +E+L
Sbjct: 822  FSIKDDKTIVYGLGAIKGVGEALVQTLVAEREAGGEYKDLFEFCARIEKKSLNKRAIEAL 881

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            +++GA D FG  R  LL++     K A+  + ++TN    +F   +     +++ +    
Sbjct: 882  IYSGAFDVFGVDRASLLKTYPKAVKQAEQRQNDQTNGQNTLFNSIQEHAEYELSYDPCPR 941

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +   R + E+ V+G+YF  HP D YK  L+++G+   +++V       +R+ A++   +
Sbjct: 942  FSFKERLKLEKSVMGYYFYDHPTDEYKDDLKRIGVTLPKDTV-LRNNKEVRVLALISELR 1000

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               TR G ++  +   + + +  A  FP
Sbjct: 1001 YITTRSGDQMASIIIEDGSTKLSAVIFP 1028


>gi|288929494|ref|ZP_06423338.1| DNA polymerase III, alpha subunit [Prevotella sp. oral taxon 317 str.
            F0108]
 gi|288328999|gb|EFC67586.1| DNA polymerase III, alpha subunit [Prevotella sp. oral taxon 317 str.
            F0108]
          Length = 1249

 Score =  976 bits (2523), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1120 (32%), Positives = 572/1120 (51%), Gaps = 103/1120 (9%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA- 64
            +K   FVHL VH+ YS+L+G  S+  ++DK  A+    +A+TD  N+F   EF       
Sbjct: 13   DKMEDFVHLHVHTYYSILDGQSSIQRLVDKAIANGMGGMALTDHGNMFGTKEFFNYCKKV 72

Query: 65   ------AGI---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
                   G+   +PIIGC++ +          +      +   +++L     GY+ L +L
Sbjct: 73   NGKRKEEGLPEFKPIIGCEMYVARHRKTDKVKENG--DMSGYHLIVLAKNYTGYKNLTKL 130

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VSR ++ D      R     L+    EGLI+ +   +G + R    N  + A +    + 
Sbjct: 131  VSRAWV-DGYYMRPRTDREDLETYH-EGLIVCSACIAGEVPRKILRNDIEGAREAAQWYH 188

Query: 176  KLFGDRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSE 222
            ++FGD  Y+ LQRH   D             +     ++++A    + +V TN++ F+ +
Sbjct: 189  RVFGDDYYLELQRHEVKDPHIRANREAFPLQQRANKVMLEMAEEMGIKVVCTNDAHFVDQ 248

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
            E+ EAHD L+ ++    +    R   +   + K R EM  +F DLP+A+ NTVEI  +  
Sbjct: 249  ENAEAHDHLLCLSTGKDLDDPTRMLYSKQEWFKTREEMNEVFGDLPQAMRNTVEILNKVE 308

Query: 283  FILQVHAPILPRFIEKECDDIQKE------------------------------------ 306
                 H+PI+P F   E    +++                                    
Sbjct: 309  TYSIDHSPIMPFFPIPEDFGTEEQWRQRISEKELYDEFTSDENGQNQLPPEEGEEKIKKL 368

Query: 307  -----------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                       E + L   A  G +    +         ++ R+R++FEL+++  M F G
Sbjct: 369  GGYEKLYRIKFEADYLAKLAYDGAKKLYGE------PLTEEVRERVNFELHIMKTMGFPG 422

Query: 356  YFLIVADFIQWA-KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFLIV DFI  A  + ++ VGPGRGS AGSV AY L IT IDP+++ LLFERFLNPDR+S
Sbjct: 423  YFLIVQDFINTAQNELDVMVGPGRGSAAGSVVAYCLGITKIDPIKYDLLFERFLNPDRIS 482

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            +PD D DF  D R  V+ +V++KYGH++VA IIT+G++  K +++DVGR  ++P   V+ 
Sbjct: 483  LPDIDTDFDDDGRGRVLEWVEDKYGHDKVAHIITYGTMATKNSIKDVGRVEKVPLKIVND 542

Query: 475  LCKLIPNDPAHPVSL---QAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAA 530
            LCKLIP+     + +    AI      REA  + D  +   +  ++ LEG  R    HA 
Sbjct: 543  LCKLIPDKLPDGLKMSVANAIKAIPELREAEASADEGLRNTMMYAKMLEGTVRGTGIHAC 602

Query: 531  GIVIGDRPLSQLVPMYR-----DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            G +I    +S  VP+       D    L  TQ++   IE+ GLIK DFLGLKTL++L+++
Sbjct: 603  GTIICRDAISDWVPVSTAEDKADPGHKLLCTQYDGHVIEETGLIKMDFLGLKTLSILKEA 662

Query: 586  LDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            ++ +    G  ++L  IP DD  TY L     T+G FQ ES+GM++ L  +QP   ED+I
Sbjct: 663  VENVRLSTGKTINLEEIPIDDPLTYKLYCEGRTIGTFQFESAGMQKYLRELQPTVFEDLI 722

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            A+ +LYRPGP+D I  +  RK    ++    P ++  LK+T G+ +YQEQVM +++ L+ 
Sbjct: 723  AMNALYRPGPMDYIPEFIARKRDPSRVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLAN 782

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            ++  ++D LR+AMGKK+  +MDK +  F  G  KNG  K +   I+E   KFA Y FNKS
Sbjct: 783  FTRGQSDTLRKAMGKKLIAQMDKLETLFYEGGMKNGHPKEVLNKIWEDWKKFASYAFNKS 842

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HA  Y+ +++QTA+ K HYP E++AA M+  + N+ +I KF  + R   I+ + P VN  
Sbjct: 843  HATCYSWVAFQTAYFKAHYPAEYMAAVMSRNLANISEITKFMDECRVMGIKTLGPDVNES 902

Query: 825  CVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVL 882
             + F V     I + LAAIKG+G   A+ I+ E   + P+ S+ D   RV+   +N++ +
Sbjct: 903  RLKFSVNKHGEIRFGLAAIKGMGDAAAQAIIQEREKNGPYTSVFDMVQRVNLSSVNKKAI 962

Query: 883  ESLVFAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            ESL  +G  D  G +R   L +       +DN+ +Y Q  +  +     ++F        
Sbjct: 963  ESLALSGGFDSLGIARENYLGTDSKGATFIDNLTRYGQLFQMEQQQMQNSLFGASNAVEV 1022

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRG 992
                + +    +S  R   E+ ++G Y S HPLD YK +L+ M   G  E    +A ++ 
Sbjct: 1023 STPPVPQAERWSSIERLNKERDLVGIYLSAHPLDDYKIVLQSMCNTGCNELEDRMALVQK 1082

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + LA MV + +   T+ G   G+VT  + +   E  FF
Sbjct: 1083 AEVTLAGMVTNTRSAVTKTGKPCGFVTIEDYSGSGELAFF 1122


>gi|295136252|ref|YP_003586928.1| DNA polymerase III subunit alpha-1 [Zunongwangia profunda SM-A87]
 gi|294984267|gb|ADF54732.1| DNA polymerase III subunit alpha-1 [Zunongwangia profunda SM-A87]
          Length = 1462

 Score =  976 bits (2523), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/1093 (32%), Positives = 560/1093 (51%), Gaps = 79/1093 (7%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK- 61
            + L++ P F HL  HS +S+L+  +S+ ++++       PA+A+TD  N+  A  F ++ 
Sbjct: 255  EKLDEVP-FAHLHNHSQFSVLQSTISIADLVNAAGEQNMPAVALTDHANMMGAFHFVKEV 313

Query: 62   --------------------ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
                                A A  ++ IIGC+        +   +  K+       +V+
Sbjct: 314  GAYNKNVQAKNEEAEANGEPAQAKELKAIIGCEFF------VCENHTDKSRKDNGYQVVM 367

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
            L    +GY  L ++ S+ Y  D      RI    +++   E +I+LTG   G +      
Sbjct: 368  LAKNKKGYHNLAKMSSKAYT-DGFYYVPRIDKEVVKQY-KEDVIVLTGNLYGEVPSKILN 425

Query: 162  NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFL 220
               + AE+ LL +K+ FGD LY+ + RH   D  R +Q +++ +  H++ L+ATNN+ + 
Sbjct: 426  VGEKQAEEALLWWKEEFGDDLYIEIMRHNQEDENRVNQVLIEFSKKHDIKLIATNNTYYW 485

Query: 221  SEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALEN 273
             ++D  AHD+L+ V      +                ++Y K   EM ++F DLPEA+ N
Sbjct: 486  KKDDANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKTAEEMKNLFKDLPEAISN 545

Query: 274  TVEIARRCSFILQVHAPILPRFIEKE--------CDDIQKEEENELRNKAVAGLEVRLAQ 325
              EI  +          +LP F   E         D  ++ E   L++    G E R   
Sbjct: 546  IKEIVDKIEPFELARDVLLPAFTIPEEFLVEEDKVDGGKRGENAYLKHITYKGAEERY-- 603

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                 G      ++RLDFEL+VI    + GYFLIV DFI+ A+  ++ VGPGRGS AGS 
Sbjct: 604  -----GEITPAIKERLDFELSVIENTGYPGYFLIVEDFIREARNLDVSVGPGRGSAAGSA 658

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV  KYG  +VAQ
Sbjct: 659  VAYCLGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIGKYGANQVAQ 718

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DPAHPVSLQAIADDSRFREAR-- 502
            IIT+G++ AK+++RD  R L +P S  DR+ KLIPN        +   A  ++FR     
Sbjct: 719  IITYGTMAAKSSIRDTARVLDLPLSDADRIAKLIPNTKLGKIFGMDEKALKAKFRSEEVD 778

Query: 503  ---------LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                       D    + +  ++ LEG  R+   HA G++I    ++  VP+     SDL
Sbjct: 779  SINELLNIAEGDDLEAQTVNQARVLEGSVRNTGIHACGVIITPSDITNYVPVSVAKDSDL 838

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLL 612
             VTQF+   +E AGL+K DFLGLKTLTL++ ++  +  R  + +     P DD ETY L 
Sbjct: 839  YVTQFDNSVVESAGLLKMDFLGLKTLTLIKDTIKIVKGRHNIDLVPDEFPLDDEETYKLF 898

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
                T+GIFQ ES GM++ ++ ++P   +D+IA+ +LYRPGP++ I  +  RK+G E+I 
Sbjct: 899  QRGETVGIFQYESPGMQKHMQALKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGDEEIS 958

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
               P ++  LKET G+ +YQEQVM ++Q L+G++  EAD+LR+AMGKK+   + + K +F
Sbjct: 959  YDLPDMEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADMLRKAMGKKLVALLAQLKPKF 1018

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I G    G    +   I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA +
Sbjct: 1019 IGGGEAKGHPTEVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVL 1078

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTAR 851
            +  M++++++  F ++ ++  + ++ P VN     F V  +  + + + AIKGVG     
Sbjct: 1079 SNNMNDIKQVTFFMEECKRMKLNVLGPDVNESYYKFSVNKDYAVRFGMGAIKGVGAGAVA 1138

Query: 852  HIMEASAD--KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS---- 904
             I+E       P+ S+ D   R+D +  N++  E+L  AG  DCF    R Q        
Sbjct: 1139 TIVENRKGEAGPYRSIFDMAKRIDLRAANKKAFENLALAGGFDCFKETHRAQYFHDEGDG 1198

Query: 905  ---LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               L+ + K+A   ++N  +   ++F         + ++       +  +   E+ V+G 
Sbjct: 1199 MSFLEKVVKFAAKFQENENSSQVSLFGEASEVQIPEPSVPPCEEWGTMEKLRREKEVVGI 1258

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y SGHPLD +K  ++        +  A  +     I    ++   Q + ++ G      T
Sbjct: 1259 YISGHPLDDFKKEIQYFCNGSLSDFRALEKVVNREISFGGVISDVQHRMSKMGKGWAMFT 1318

Query: 1020 FSEPAKEYEANFF 1032
              +  + YE   F
Sbjct: 1319 VEDYNESYEFRMF 1331


>gi|229192805|ref|ZP_04319763.1| DNA polymerase III subunit alpha [Bacillus cereus ATCC 10876]
 gi|228590644|gb|EEK48505.1| DNA polymerase III subunit alpha [Bacillus cereus ATCC 10876]
          Length = 1105

 Score =  976 bits (2523), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1025 (36%), Positives = 586/1025 (57%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+IG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++  +              +VLL     GYQ L+++ S +      K    I 
Sbjct: 62   LTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEGIP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    ++   AE+   T++ +F    Y++LQ H   
Sbjct: 107  KKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMF-GHFYMSLQHHAIQ 164

Query: 193  DRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            D     + + +      + +VATN+  ++++ D   H+ L++V   T ++  DRPR+  D
Sbjct: 165  DELLLQEKLPEFISRVNISVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 252  HY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             Y LK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F     +      +  
Sbjct: 225  QYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNE----TSDIY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL  R        G   + + +RLD ELNVI+RM FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLRKRY-------GEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  YILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK-D 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 453  AYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A +   ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G   NG ++T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLGNGYNETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+    
Sbjct: 812  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA               A + G    K    +    +   +   E+  LGFY S +P  
Sbjct: 872  EYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|315224650|ref|ZP_07866473.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga
            ochracea F0287]
 gi|314945278|gb|EFS97304.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga
            ochracea F0287]
          Length = 1485

 Score =  976 bits (2523), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1085 (32%), Positives = 559/1085 (51%), Gaps = 78/1085 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            F HL  H+ +S+L+   S+ +++   A ++ PA+A+TD+ N+ +A  F Q          
Sbjct: 255  FGHLHNHTQHSILQSTTSIKDLVKITAKEKMPAVALTDSGNMMAAFHFVQAVQGHNKEAE 314

Query: 67   -----------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                             I+PIIGC      + N+   +  ++       +V+L    +GY
Sbjct: 315  AKNKEAEEKSETPTETLIKPIIGC------EFNICENHLDRSRQDNGYQVVILAKNKQGY 368

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L ++ S            RI  + + E     LI+L+GG +G +        ++ A++
Sbjct: 369  HNLTKMASIASTKG-FYYVSRIDKA-IVEQYKSDLIVLSGGMNGEVPSKILNIGTKQAKE 426

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             LL +K+ FG+  Y+ + RH   D  R ++ +V+ +  + + L+ATNN+ +L ++D  AH
Sbjct: 427  ALLWWKEQFGEDFYLEVMRHNQEDENRVNETLVEFSRKYGVKLIATNNTFYLHKKDANAH 486

Query: 229  DVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            D+L+ V                       ++Y K  +EM ++F D+PEA+ N  EI  + 
Sbjct: 487  DILLCVKDGEKQKTPIGRGRGYRFGMPNNEYYFKTTAEMKTLFKDIPEAILNIQEIIDKV 546

Query: 282  SFILQVHAPILPRFIEKE------CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
                     +LP+F   E          +K E N LR+    G + +  +          
Sbjct: 547  EPYGLARDILLPKFDIPEEFQVEEDPTGKKGENNYLRHLTYEGAKRKYPE-------ITD 599

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            + R+RLDFEL++I +  + GYFLIV DFI  A++ N+ VGPGRGS AGS  A+ L IT++
Sbjct: 600  EVRERLDFELSIIEKTGYPGYFLIVQDFIAAARRMNVSVGPGRGSAAGSAVAFCLDITNM 659

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DP+++ LLFERFLNPDR+SMPD DIDF    R +VI YV +KYG  +VA+IIT+G + AK
Sbjct: 660  DPIKYDLLFERFLNPDRVSMPDIDIDFEDSGRQDVINYVIDKYGESQVARIITYGKMAAK 719

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPA-----HPVSLQAIADDSRFREARLADPSVDR 510
            +A++D  R L +P  + +RL  L+PN  +          + + +  R  E    D     
Sbjct: 720  SAIKDTARVLDVPLQESNRLASLVPNGVSSLGKMFSWDDKTLKEKVRSEELPKVDELKRL 779

Query: 511  L-----------LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
            L           ++ +  +EG  R+   HA G++I    ++  VP+     SDL VTQF+
Sbjct: 780  LAGEGEEDSTQTIQQANIIEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDLFVTQFD 839

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTL 618
               +E AGL+K DFLGL TLTL++ +++ + Q   +++D    P DD +TY L     T+
Sbjct: 840  NSVVESAGLLKMDFLGLSTLTLIKDTIENIKQTHNIELDAEAFPLDDKKTYELFQRGETV 899

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            GIFQ ES+GM++ +  ++P    D+IA+ +LYRPGP++ I  +  RK+G E I    P +
Sbjct: 900  GIFQYESTGMQKYMRELKPTVFADLIAMNALYRPGPLEYIPSFIKRKHGIEPIEYDLPDM 959

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  LKET G+ +YQEQVM ++Q L+G++  EADVLR+AMGKK    + K K +FIS AS+
Sbjct: 960  EEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQIAVLAKMKPKFISQASE 1019

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             G        I+    KFA Y FNKSH+  YA + YQTA++K +YP E++AA ++  M++
Sbjct: 1020 RGHDTQKLEKIWTDWEKFAAYAFNKSHSTCYAWVGYQTAYLKANYPAEYMAAVLSNNMND 1079

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEAS 857
            ++ I  F ++  +  I+++PP VN     F V  N    + + A+KGVG      I+E  
Sbjct: 1080 IKTITFFLEECHRMGIKVLPPDVNESLYKFTVNKNGDIRFGMGAVKGVGKAAVDTIVEQR 1139

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQ 909
             ++P+ S+ D   RVD K +N++  ES+  AG  D F    R Q   +       L+   
Sbjct: 1140 QERPYTSIFDLAKRVDYKSINKKAFESIALAGGFDSFTNVHRAQYFHAEADGVPFLEKAI 1199

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++    ++++ +   ++F  E      +  + K     +  +   E+ V+G Y SGHPLD
Sbjct: 1200 RFGTKYQESKNSAQMSLFGGESEVDIPEPAVPKCETWGNLEQLRREKEVVGIYISGHPLD 1259

Query: 970  VYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             +K  L+        E           + +A MV   Q +  + G   G+ T  +    Y
Sbjct: 1260 DFKHELQNFCNISLSELQDLQPFINRELTVAGMVADLQHRTAKNGKGYGFFTLEDYDGSY 1319

Query: 1028 EANFF 1032
            E   F
Sbjct: 1320 EFKLF 1324


>gi|257452286|ref|ZP_05617585.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
 gi|317058829|ref|ZP_07923314.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
 gi|313684505|gb|EFS21340.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
          Length = 1144

 Score =  976 bits (2523), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1033 (35%), Positives = 598/1033 (57%), Gaps = 31/1033 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL+G   + + + +  + +  AIAITD  N+F ALEF QKA   G++P
Sbjct: 3    DFVHLHLHTEYSLLDGVGKIEDYMKRAKSLRMKAIAITDHGNMFGALEFYQKAQKYGLKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ +      +   +          ++LL    EGYQ L++L S  YL        
Sbjct: 63   IIGMEIYLSEYPLAEKKGRN-------FHLILLAENYEGYQNLMKLSSLAYLEG-FYYKP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ-VAEKRLLTFKKLF-GDRLYVNLQ 187
            R+    L++  ++G+I L+   +G I       + +   E  +L ++ +F  +  Y+ +Q
Sbjct: 115  RLDKELLKKY-SKGIIALSACMNGEIASYILEGAEESKIEATILEYQDIFGKENFYLEVQ 173

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++ +    +        +PLVATN++ ++++ ++   DV++ +   + +S + R 
Sbjct: 174  AHEEIEQQKVNEALYTFGRKMNIPLVATNDTHYVNKGEHVLQDVIVCIQTGSHLSDEKRM 233

Query: 247  RVT-PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            ++   D YLK+  EM ++      EAL+N+VEIA+RC   + +H    P +   E     
Sbjct: 234  KIEMQDLYLKSYEEMYAVLGEQYQEALQNSVEIAKRCQLWIPMHEFQFPDYNLPEG---I 290

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               E  L+     GL  R  QG   +        +R+++EL++I +M ++GYF++V DFI
Sbjct: 291  SSLEEYLKKLTYEGLGKRYPQGLDER------IIERVEYELSIINKMGYAGYFVVVWDFI 344

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+   IP+GPGRGS AGS+ AYAL IT +DPL + L+FERFLNP+R+SMPD DID CQ
Sbjct: 345  SFARSRKIPIGPGRGSAAGSLVAYALEITQLDPLEYHLIFERFLNPERISMPDIDIDICQ 404

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR E+I YV  KYG ++VAQI TFG+L+A+AA+RDVGR + +  +++D+  K IP   +
Sbjct: 405  ERRQEIIDYVVQKYGQDKVAQIATFGTLKARAAIRDVGRVMDVELAKIDKAAKCIPMFAS 464

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 + + ++   +     D  +  ++  + ++E   RH STHAAG++I  + L++ VP
Sbjct: 465  LK---EVLEENIELKTMYQQDVELKNVINTAMRIENKVRHISTHAAGVLITKKSLTESVP 521

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +Y D ++ +  TQ+ MK +E+ GL+K DFLGL+TLT+LQ++ D++ +    K++LS IP 
Sbjct: 522  LYADSKNGIVSTQYQMKELEELGLLKIDFLGLRTLTILQRTQDYIEENTGKKIELSEIPL 581

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
             D   Y +L+   + G+FQ+ES G+R  L+ +QP+   DI+AL+SLYRPGP+ + +V  +
Sbjct: 582  QDKTVYEMLSKGDSFGVFQMESKGLRSILKRLQPNSFGDIVALLSLYRPGPLGSGMVDDF 641

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             +RK+GK+ I   HP ++ +LKET GVI+YQEQVM+IA +++ YSL EAD+LRRAMGKK 
Sbjct: 642  IDRKHGKKAIEYPHPSLEEVLKETYGVILYQEQVMKIANIMADYSLGEADLLRRAMGKKN 701

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E M + + +FI  + K G S+  A  IF+L+ KFA YGFNKSH+AAYA+I+Y TA+ K 
Sbjct: 702  VEIMHENRSKFIERSIKKGYSQEKAEEIFDLIDKFAGYGFNKSHSAAYALIAYWTAYCKV 761

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP  F AA ++ E+ +++KI  +  DA+   ++I  P V  P   F V  ++I ++L+A
Sbjct: 762  HYPKYFYAALLSSEISDIDKISFYFADAKAHGVEIETPDVQFPSSRFVVKGDKILFALSA 821

Query: 842  IKGVGTT-TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK VGT  + +   E      F S EDF  R+  + LN++ LE+ ++AGALD    +R +
Sbjct: 822  IKNVGTGISEKIKEEREKKGEFRSYEDFVERMKKEGLNKKGLEAFIYAGALDSLSGNRHE 881

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             ++SLD +  Y Q   K    +  N+F   K     + +L +    +  V  E E+  LG
Sbjct: 882  KIESLDKVLDYVQRKAKADDIQQMNLFGDSKKNL-VQFSLSRTEEYSMEVLLEKEKEFLG 940

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +PLD Y+ + +                  + L  ++ + ++ +T+KG  + +   
Sbjct: 941  FYVSANPLDQYESLYQSFDFDELNLIKEENMEREVWLYGIIQNLKKTRTKKGDAMAFADL 1000

Query: 1021 SEPAKEYEANFFP 1033
                 +     FP
Sbjct: 1001 ENYQGQIPMVIFP 1013


>gi|86130781|ref|ZP_01049380.1| DNA polymerase III, alpha subunit [Dokdonia donghaensis MED134]
 gi|85818192|gb|EAQ39352.1| DNA polymerase III, alpha subunit [Dokdonia donghaensis MED134]
          Length = 1463

 Score =  976 bits (2522), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1079 (32%), Positives = 556/1079 (51%), Gaps = 65/1079 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA--AGIQ 68
            F HL  HS +S+L+   S+ +I+   AA + PA+A+TD  N+  A  F++   +  AG++
Sbjct: 262  FAHLHNHSQFSILQSTASVQDIVKAAAAQKMPAVAMTDMGNMMGAFHFTKAVKSHNAGVK 321

Query: 69   PIIGC-------------QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
                              +  I  + N+ + ++ K+       IV+L     GYQ L ++
Sbjct: 322  KANAAAVEAGEDPEGVPLKAIIGCEFNVCVDHKNKSQKDNGYQIVILAKNKNGYQNLCKM 381

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S  Y  D      RI  + + +   + LI+LTG   G +           AE+ L+ +K
Sbjct: 382  ASIAYT-DGFYYVPRIDRNVIMQY-RDDLIVLTGNLYGEVPSKILNVGENQAEEALIWWK 439

Query: 176  KLFGDRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            + FGD LY+ L RH   D  R    ++ L+  H +  VA+NN+ ++ + D +AHDVL+ V
Sbjct: 440  EQFGDDLYIELMRHGQEDEDRVMPVLIALSRKHNIKTVASNNTFYIDKSDADAHDVLLCV 499

Query: 235  AHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
                 V+                ++Y K+  EM  +F+D+PEA+ N  E+  +       
Sbjct: 500  KDGEKVATPKGRGRGYRYGLPNDEYYFKSGEEMKILFADVPEAILNVQEVVDKIEPYELA 559

Query: 288  HAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
               +LP F         E   D  ++ E   LR+    G + R  +        +++  +
Sbjct: 560  RDVLLPAFDIPQEFVSPEDAIDGGKRGENAFLRHLVYEGAKKRYGEEL------SEEVTE 613

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RLDFEL+VI +  + GYFLIV DFI+ A+  ++ VGPGRGS AGSV AY L IT+IDP++
Sbjct: 614  RLDFELDVIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVAAYCLWITNIDPMK 673

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            + LLFERFLNPDR+SMPD DIDF  + R  V++YV +KYG  +VAQIIT+G++ AK+++R
Sbjct: 674  YDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMQYVIDKYGANQVAQIITYGTMAAKSSIR 733

Query: 460  DVGRALQMPYSQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADP 506
            D  RAL +     DR+ KLIP              +         +            D 
Sbjct: 734  DTSRALDLSLGDADRIAKLIPTMSKLRKIFGKTDAELRSSFRSDDLPKVQELINIETQDN 793

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
               ++L  +++LEG  R+   HA G++I    ++  VP+     SDL VTQF+   +E+A
Sbjct: 794  LEGQMLRQARQLEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDLYVTQFDNSVVEEA 853

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K DFLGLKTLTL++ ++  +  R  V +D    P DD +TY L     T+GIFQ ES
Sbjct: 854  GLLKMDFLGLKTLTLIKDTVKLVKYRHNVDLDPENFPLDDEKTYELFQRGDTVGIFQYES 913

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
             GM++ ++ ++P   ED+IA+ +LYRPGP++ I  +  RK+G+E+I    P ++  LKET
Sbjct: 914  PGMQKHMQSLKPTVFEDLIAMNALYRPGPMEYIPSFVRRKHGEEEIEYDLPAMEEYLKET 973

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK    +DK K +FI  AS  G     
Sbjct: 974  YGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQASAKGHDPEK 1033

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               I++    FA Y FNKSH+  YA I+YQTA++K HYP E+LAA ++  M++++++  F
Sbjct: 1034 LEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYLKAHYPAEYLAAVLSNNMNDIKQVTFF 1093

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
             ++A++  ++++ P VN     F V DN  + + + A+KGVGT     I+E   D  + S
Sbjct: 1094 MEEAKRMGLEVLGPDVNESFRKFTVNDNGAVRFGMGAVKGVGTGAVATIVENRKDGKYKS 1153

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGY--SRMQLLQS-------LDNIQKYAQWV 915
            + DF  RVD +  N++  ESL  AG  D       R Q           L+   KY    
Sbjct: 1154 VFDFARRVDLRAANKKAFESLALAGGFDELDGDTHRAQFFNDNGDGITFLEKAVKYGARY 1213

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            ++N  +   ++F         +  +       +  + + E+ V+G Y SGHPLD +K  +
Sbjct: 1214 QENENSSQVSLFGESSEVQIPEPEVPPCEEWGTMEKLKREKEVVGVYISGHPLDDFKTEM 1273

Query: 976  RKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                         +       +    ++   Q + ++ G      T  +    +E   F
Sbjct: 1274 ETFCNATVAHFNQMEAFVNRELTFGGVITDVQHRVSKNGKGWAAFTVEDFTDSFEFRMF 1332


>gi|198274347|ref|ZP_03206879.1| hypothetical protein BACPLE_00491 [Bacteroides plebeius DSM 17135]
 gi|198272837|gb|EDY97106.1| hypothetical protein BACPLE_00491 [Bacteroides plebeius DSM 17135]
          Length = 1265

 Score =  976 bits (2522), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1147 (31%), Positives = 583/1147 (50%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59
             FVHL VH+ YS+L+G  S+  ++DK  A+    IA+TD  ++F   EF           
Sbjct: 3    DFVHLHVHTQYSILDGQASIPRLVDKAMANGMRGIAVTDHGDMFGIKEFFNYVNKKNGGT 62

Query: 60   -----------------------------------QKACAAGIQPIIGCQLDIDMQDNLK 84
                                               + A     +PI GC++ +      +
Sbjct: 63   NGEIKDLKKKIAALESGKEESENPEAEIAACKEQLEAAKKKLFKPIFGCEMYVA---RRR 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            + ++   P  +   +V+L    +GY  LI+LVS+ +         R   + L++   EGL
Sbjct: 120  LEDKEGKPDQSGYHLVVLAKNLKGYHNLIKLVSKAWTKG-FYMRPRTDRAELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + R       + AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IVCSACLGGEVPRRITAGQFEEAEEAIRWYKNLFGDDYYLELQRHKATVARANHEVYPMQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +    ++++ A  + + LV TN+  F+ EE+ EAHD L+ ++    +   +R   T   +
Sbjct: 238  QVVNEKLIEYAKKYNIKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K R EM  +F+D+PEAL NTVEI  +  F    HAPI+P F   E    ++E       
Sbjct: 298  MKTREEMNEVFADVPEALSNTVEICDKVEFYSIDHAPIMPTFAIPEDFGTEEEYRKKFTE 357

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L   A  G + R  + 
Sbjct: 358  KDLFDEFTRDENGNVVMDEAAAKAKIERLGGYEKLYRIKLEADYLAKLAYDGAKRRYGEN 417

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                   +++ ++R+ FEL+++  M F GYFLIV DFI  A+   ++ VGPGRGS AGS 
Sbjct: 418  L------SEEVQERIKFELHIMKTMGFPGYFLIVQDFINAARHQLDVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA 
Sbjct: 472  VAYCLGITQIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRLCKLIP+  P   ++L  AIA     +EA +
Sbjct: 532  IITYGTMATKLAIKDVARVQKLPLSESDRLCKLIPDKLPDKKLNLPNAIAYVPELQEAEV 591

Query: 504  A-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558
            + +P +   ++ ++ LEG  R+   HA G +I    ++  VP+     ++    + VTQ+
Sbjct: 592  SPNPVLRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL++++++++ + Q +G+ +++  +P DD  TY L +   T
Sbjct: 652  EGSVIEDTGLIKMDFLGLKTLSIIKEAIENIRQSKGIVLNIDEVPIDDPATYRLYSEGRT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPI 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGK 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA+M+  + 
Sbjct: 832  KNGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAATMSRNIS 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIM-E 855
            N+ +I K   + +   ++++ P VN   + F V     I + L AIKGVG +  + I+ E
Sbjct: 892  NITEITKLMDECKSMGVKVLGPDVNESNLKFSVNYRGDIRFGLGAIKGVGESAVQSILDE 951

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL-------QSLDN 907
               +  F ++ DF  RV+    NR+ +E+L  AG  D F G  R              D 
Sbjct: 952  RRKNGEFKNIFDFVQRVNLSACNRKNIENLALAGGFDSFSGIKREDFFVKNAKDESFSDI 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         +      +   R   E+ ++G Y S HP
Sbjct: 1012 LVRYGNKYQLDKAAAANSLFGGEHEVEVATPEIVPAPSWSDLERLNKERDLVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD +  IL  +      E      ++ +++ L  +V   ++  T+ G   G     + + 
Sbjct: 1072 LDEFAVILENVCNVHMAELTDLTPLQNHDLVLGGIVTGVREGYTKTGKPYGIAKVEDYSG 1131

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1132 TAEFAFF 1138


>gi|162452023|ref|YP_001614390.1| DNA polymerase III, alpha subunit [Sorangium cellulosum 'So ce 56']
 gi|161162605|emb|CAN93910.1| DNA polymerase III, alpha subunit [Sorangium cellulosum 'So ce 56']
          Length = 1212

 Score =  976 bits (2522), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1077 (37%), Positives = 596/1077 (55%), Gaps = 61/1077 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  F+HL VHS YSLL+G+L + ++  +  +    A+A+TD  N+F A++  +     GI
Sbjct: 2    TAEFIHLHVHSQYSLLDGSLRVKDLAARAKSLGMRAVALTDHGNMFGAIQHYKACKDQGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
              IIGC++++            ++     P   +VLL ++ EGY+ L+ +VS+ ++    
Sbjct: 62   GAIIGCEVNVARSWGTAAGQVSRSGVDETPVDHLVLLAASEEGYKNLVRIVSQGHVDPAS 121

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYV 184
              +  + L  + +    GLI LTG   G + +           + L   +  F    LYV
Sbjct: 122  GLAPSVRLDTVAQ-HNAGLIGLTGCMGGVVAQRILEQGEGEGREALSRLRDCFQPGSLYV 180

Query: 185  NLQRHRGYDRYRESQVVQLAY-THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ H   ++   + ++  A     LPLVATN++ F + ED E    L  +A +   ++ 
Sbjct: 181  ELQDHGLVEQSVLNGILARAAGDLGLPLVATNDAHFGAREDGEGQLYLSCIAANRTFAEA 240

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRFIEKECD 301
                  + + +LK   EM+ +F D P+A+ +T+EIA RCS   L++  P+LP F      
Sbjct: 241  SAAHHGSFEMFLKPADEMMHLFRDHPQAVRSTLEIAERCSTLKLKLGKPMLPTFPLPSG- 299

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIA-KGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  +  R+ A  GL  RLAQ A   +      YR RLD ELNVI +M F GYFLIV
Sbjct: 300  --FADSASYFRHVAHDGLTKRLAQIAQTGRKVDEATYRARLDVELNVIVQMDFPGYFLIV 357

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++AK + IPVGPGRGSGAGS+ AYA+ ITD+DPL ++LLFERFLNP+R+SMPDFD+
Sbjct: 358  WDFIKYAKDHGIPVGPGRGSGAGSLVAYAMEITDLDPLPYNLLFERFLNPERVSMPDFDV 417

Query: 421  DFCQDRRDEVIRYVQNKYGHER----VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFC DRRDEVI YV  KY  E     V QI TF  L+A++ ++DV RA+  P ++  ++ 
Sbjct: 418  DFCMDRRDEVISYVTKKYSKEADKPSVGQIATFHELKARSVIKDVARAMAFPANEAQKIA 477

Query: 477  KLIPNDPAHPVSL--QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             LIP      +    +A+  + + +  + +DP+V  LL+ +QKLEGL RHA  HAAG+VI
Sbjct: 478  SLIPQKSPGIMYTIPEALEIEPKLKALKESDPTVAELLKQAQKLEGLTRHAGMHAAGVVI 537

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
             + PL   VP ++    +  VTQ+     E AGL+KFDFLGLKTLT++  ++  +  R  
Sbjct: 538  SEGPLWDHVPCFK--NGEQLVTQYYKDDAELAGLVKFDFLGLKTLTVIDIAVRLVNARPD 595

Query: 594  ------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
                   + D++ +P DD  TY LL +  T G+FQLESSGM+Q  + ++PD  EDI+A V
Sbjct: 596  LAAKEGKRFDVNTVPLDDTATYALLQSGETTGVFQLESSGMQQLFKDLKPDAFEDIVAAV 655

Query: 648  SLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +LYRPGP+   +V  + + K+G++ I  +HPL+D +L+ T GVI+YQEQVMQIAQ L+GY
Sbjct: 656  ALYRPGPLGTGMVKDFVDCKHGRKPIEKMHPLVDELLQPTYGVIVYQEQVMQIAQKLAGY 715

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQK  F+ G+ KNG+    A  IF LL  FA YGFNKSH
Sbjct: 716  TLGGADLLRRAMGKKKPEEMAKQKATFVDGSLKNGVKAEDAERIFGLLEYFAGYGFNKSH 775

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA+++YQTA++K HYPVEFL A MT + D +EK+ +   + R + ++I+PP +N   
Sbjct: 776  SAAYALLTYQTAYLKAHYPVEFLCALMTADRDKIEKVVRIIAEGRAWGVEILPPEINESK 835

Query: 826  VDFKVGD--------------------------NRIYYSLAAIKGVGTTTARHIMEAS-A 858
             DF V                             +I + + AI+GVG +    I+EA  A
Sbjct: 836  TDFTVVYSAKPATNGKRVAGTRRGGSRVRDPYDPKIRFGMGAIRGVGESALEAILEARDA 895

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF----GYSRMQLLQSLDNIQKYAQW 914
               F  L DF  RVD +++N+ V E+LV  GA D      G SR +    +D   + ++ 
Sbjct: 896  GGVFADLFDFAERVDPRRVNKGVFEALVQCGAFDASLHARGISRARAFAGIDRALERSRS 955

Query: 915  VEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
              K R +    +FA        ++         +       E++ LGFY SGHPLD Y  
Sbjct: 956  ASKERNSAQIGLFAAVASKSEVRLDDYPTAEDWDLRETLSREKQSLGFYVSGHPLDRYGV 1015

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEA 1029
             L +  +              +R+  MV   +++  +  G +I +    +     E 
Sbjct: 1016 DLNRFDVTAVSALAGMDAWARVRVGGMVEGYRERIFKGGGGKIAFFVLEDTTGRVEV 1072


>gi|228993333|ref|ZP_04153249.1| DNA polymerase III subunit alpha [Bacillus pseudomycoides DSM 12442]
 gi|228766401|gb|EEM15044.1| DNA polymerase III subunit alpha [Bacillus pseudomycoides DSM 12442]
          Length = 1096

 Score =  976 bits (2522), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1015 (35%), Positives = 581/1015 (57%), Gaps = 46/1015 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L+ A  ++ ++ +       ++AITD N ++  + F +     G++PIIG    +  ++
Sbjct: 1    MLKSACKIDELVSRAKELGFSSLAITDENVMYGVIPFYKACKKNGVRPIIGLTASVFSEE 60

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                             +VLL     GYQ L+++ S +      K    I   WL     
Sbjct: 61   E-----------EQSYPLVLLAENEIGYQNLLKISSTIMT----KSKDGIPKKWLSHYA- 104

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQV 200
            +GLI ++ G  G I++       ++AE+    ++ +F    Y++LQ H   D  + + ++
Sbjct: 105  KGLIAISPGKDGEIEQLLLQGRDEIAEEVARAYQNMF-GSFYMSLQHHAIQDELFLQEKL 163

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY-LKNRSE 259
             Q A    +P+VATN+  ++++ D    + L++V   T ++  DRPR+  D Y LK+ +E
Sbjct: 164  PQFANEINIPVVATNDVRYVNQSDALVQECLLSVQSGTKMTDPDRPRLKTDQYYLKSSAE 223

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M ++FS   EAL+NTV IA RC   +  H   LP+F     +      +  LR     GL
Sbjct: 224  MEALFSHAEEALQNTVRIAERCHVEIPFHVNQLPKFPVPSNE----TSDAYLRRICEDGL 279

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
              R        G     +R+RL+ EL VI+RM FS YFLIV DF+++  ++ I  GPGRG
Sbjct: 280  NKRY-------GAVQDVHRKRLNHELEVISRMGFSDYFLIVWDFMKYGHEHGILTGPGRG 332

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            S AGS+ +Y L ITDIDP+ ++LLFERFLNP+R+++PD DIDF   RRDE+IRYV++KYG
Sbjct: 333  SAAGSLVSYVLEITDIDPIEYNLLFERFLNPERVTLPDIDIDFPDIRRDEMIRYVKDKYG 392

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
              RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +  +A  +    R
Sbjct: 393  QLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSRVGITLK-EAYEESGSLR 451

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
            E    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  +D+ VTQ+ 
Sbjct: 452  EFVQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGHNDVYVTQYP 510

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
             + +E+ GL+K DFLGL+ LTLL+  L F+  + G ++D+  +P  D +T+ LL    T 
Sbjct: 511  AEVLEELGLLKMDFLGLRNLTLLENILTFIVNKTGKQIDIRNLPLQDEKTFQLLGRGDTT 570

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G+FQLES GMR  L  ++P+  EDI+A+ +LYRPGP++ I  +   K+GK +I  +H  +
Sbjct: 571  GVFQLESGGMRNVLRSLKPNEFEDIVAVNALYRPGPMEQIPTFIESKHGKRQIHYLHSDL 630

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
             P+LK T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK +E +D++++ F+ G  +
Sbjct: 631  KPILKSTYGVIVYQEQIMQIASQLAGFSLGEADLLRRAVSKKNREILDQERKHFVQGCLR 690

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP+EF+ A ++  + N
Sbjct: 691  NGYDETSAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYPLEFMTALLSSAIGN 750

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
             +KI ++ ++ ++    ++PPS++    +F++  N I YSL +I+ +G  T   ++E   
Sbjct: 751  EDKIVQYIRETKRKGFHVLPPSLHRSSYNFQIEGNAIRYSLLSIRNIGMATVNAVIEERE 810

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
              PF  L +FC R+ +K +  R LE+ V+AG  D F  SR  L  S+    +YA    + 
Sbjct: 811  RNPFQDLFEFCLRMPAKFVTERNLEAFVWAGCFDDFQVSRTTLFNSIKGALEYASLARE- 869

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                       E    S  +  E+ S      +  NE+  LGFY S +P   Y  +++++
Sbjct: 870  --------LGEESVPKSVYVQGEELSF---IEQLNNEKEALGFYLSSYPTAQYAKLVKEL 918

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             I    +++   R    R    V   +  +T+K  ++ +VTF +   E EA  FP
Sbjct: 919  EIPSLAQAMRQKRNVQ-RAIVYVTGVKVIRTKKLQKMAFVTFCDQNDEMEAVVFP 972


>gi|325121909|gb|ADY81432.1| DNA polymerase III, alpha chain [Acinetobacter calcoaceticus PHEA-2]
          Length = 1187

 Score =  975 bits (2521), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1039 (36%), Positives = 587/1039 (56%), Gaps = 47/1039 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + ++++    DQ PA+A+TD +NL +A++F       GI+P+
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNSCLKKGIKPL 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + +D                      LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   LGSTIRLD---------------DAQHRATLLAMSNVGWKSLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + +I+L G  S  + +    ++ Q A   L  + + FG+R+Y+ L R  
Sbjct: 108  VKKEWVLEQH-QDIIVLLGQHS-DVGQMLCSSNPQKAAPLLEAWIEKFGNRVYLALTRTD 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     +  +LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   RPR  
Sbjct: 166  RPGEEDFIQEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADDRRPRLY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ + K   EM+ +FSD+P A+ENT  IA+RC+  LQ+    LP +   +   I    +
Sbjct: 226  SPEQHFKTSDEMIELFSDIPSAIENTYNIAKRCNVSLQLGTYFLPDYPIPDGFTI----D 281

Query: 309  NELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE RL       + +       + Y +R+D+E+ +I +M F GYFLIV D
Sbjct: 282  TYFEHLSKVGLEERLDYLYPVEKRSEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            P       AI  + + ++         +     + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLATAIEMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +     D
Sbjct: 522  KITDFSAVLCDEDGTSRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSND 581

Query: 598  ---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               +S +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLIISHVPLDDAKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  + +R +G +    +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L  AD+LR
Sbjct: 642  MDLIPDFIHRMHGGD-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ F++GA++ GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFLAGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TAW+K HYP EF+AA M+ EM N + +     D R   ++++PPSVN     F   D++
Sbjct: 761  HTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYHFHASDDK 820

Query: 835  IY-YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               Y L AIKGVG    + ++++     P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEQAMQSVIDSRRQFGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR +   ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRQELKAFIPVKLNEITATRRGVTTVYAGLVIDVANFP---- 994

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
            +R+  V   +     E + 
Sbjct: 995  NRVVIV-LDDGTARIEVSC 1012


>gi|227540116|ref|ZP_03970165.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
            33300]
 gi|227239977|gb|EEI89992.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
            33300]
          Length = 1474

 Score =  975 bits (2521), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/1099 (31%), Positives = 551/1099 (50%), Gaps = 92/1099 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            F HL  HS +S+L+  +S+  ++D    ++ PA+A+TD  N+  A  F  +         
Sbjct: 259  FAHLHNHSQFSVLQSTISIGGLVDAAVKNKMPAVALTDHGNMMGAFHFVSRVLGHNKDAE 318

Query: 67   -----------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                             I+PI+GC+  I         +  K+       +V L     GY
Sbjct: 319  TKNQELIDNGEAPTETIIKPIVGCEFFIC------EDHLDKSRKDNGYQVVFLAKNKNGY 372

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L ++ S  Y         RI    +++   E +I+L+G   G I           AE+
Sbjct: 373  HNLAKMSSVAYTKG-FYYVPRIDKKVVEQY-KEDIIVLSGNLQGEIPNKILNIGENQAEE 430

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             L+ +K+ FG+  Y+ + RH   D  R ++ +V LA  H + ++ TNN+ ++++ D  AH
Sbjct: 431  ALIWWKEQFGEDFYIEVMRHGQEDENRVNETLVSLARRHGVKVIGTNNTYYVNKADAHAH 490

Query: 229  DVLMAVAHSTVVSQKDRPR-------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            D+L+ V     +S                ++Y K+  EM  +F+DLPEA+ N  EI  + 
Sbjct: 491  DILLCVKDGEKLSTPKGRGRGFRFGLPNQEYYFKSAPEMKKVFADLPEAIVNIQEIIDKV 550

Query: 282  SFILQVHAPILPRFIEKE--------CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
                     +LP+F   E         D  ++ E   L +    G E R A+        
Sbjct: 551  EIFKLNRDVLLPKFEIPEQFQVQEDNEDGGKRGENKYLAHLTYVGAEKRYAE-------I 603

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              D R+RLDFEL  I +  + GYFLIV DFI  A+   + VGPGRGS AGS  AY L IT
Sbjct: 604  TDDIRERLDFELATIEKTGYPGYFLIVQDFIAEARNMGVSVGPGRGSAAGSAVAYCLGIT 663

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            +IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V++YV +KYG  +VAQIIT+G++ 
Sbjct: 664  NIDPIQYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMQYVIDKYGASQVAQIITYGTMA 723

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV---SLQAIADDSRFREARLADPSV-- 508
            AK++++D  R L +P ++ + + KLIPN     +     +A+ +  R  E       +  
Sbjct: 724  AKSSIKDTARVLDLPLAEANEIAKLIPNLKLSKIFNMDEKALKEALRAEELEAVHKLISL 783

Query: 509  -------DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
                      ++ ++ LEG  R+   HA G++I    ++  VP+     SDL VTQF+  
Sbjct: 784  ADGAGLEAETIKQARVLEGSMRNTGIHACGVIITPDDITNFVPVSLAKDSDLYVTQFDNS 843

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGI 620
             +E AGL+K DFLGLKTLTL++ ++  +  R  + +D    P DD  TY L     T+G+
Sbjct: 844  VVESAGLLKMDFLGLKTLTLIKDTVANVKLRHNLDLDPDNFPIDDQLTYELFQRGETIGV 903

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RK+G E IV      + 
Sbjct: 904  FQYESPGMQKHMKDLKPTVFADLIAMNALYRPGPMEYIPSFIKRKHGIEPIVYDLDACEE 963

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
             LKET G+ +YQEQVM ++Q L+G+S  +ADVLR+AMGKK K  +DK K +F++ A + G
Sbjct: 964  YLKETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKQKAVLDKMKPKFVAQAVEKG 1023

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             +  +   I+     FA Y FNKSH+  YA ++YQTA++K H+P E++AA ++  M++++
Sbjct: 1024 HNAKVLEKIWTDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHFPAEYMAAVLSNNMNDIK 1083

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD 859
            ++  F ++ R+  ++++ P VN     F V     I + + A+KGVG      I++    
Sbjct: 1084 QVTFFMEECRRMGLEVLGPDVNESHYKFTVNDRGAIRFGMGAVKGVGAGAVDTIVQTREG 1143

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKY 911
             P+ S+ D   R+D +  N++  ESL +AG  D F    R Q           L+   K+
Sbjct: 1144 NPYKSVFDMAKRIDLRAANKKAFESLAYAGGFDSFKDTHRAQYFHVDGDNSTGLEKAVKF 1203

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             Q  ++N ++   ++F         +  L          + + E+ V+G Y + HPLD Y
Sbjct: 1204 GQRHKENESSAQASLFGGGGSAELPEPVLAPCPQWGLIEKLKYEKDVIGIYLTSHPLDNY 1263

Query: 972  KPILRKMGIKGYEESV------------------ATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            K  ++        E                      I+   + +  ++ +   + ++ G 
Sbjct: 1264 KFEIKHFCQNNVSELQLINKVKASEVEEDVLLEFNKIKNKEVIIGGIIAAANHRVSKNGK 1323

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
              G +   + +  +E   F
Sbjct: 1324 PFGILVIEDYSDSFEMMVF 1342


>gi|226953025|ref|ZP_03823489.1| DNA polymerase III, alpha chain [Acinetobacter sp. ATCC 27244]
 gi|226836232|gb|EEH68615.1| DNA polymerase III, alpha chain [Acinetobacter sp. ATCC 27244]
          Length = 1187

 Score =  975 bits (2521), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1043 (35%), Positives = 574/1043 (55%), Gaps = 55/1043 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++     D+ PA+A+TD +NL +A++F +     GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRIPDLVKAAINDEMPALALTDLSNLHAAVKFYEACLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  +                         LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   LGSVI---------------RLNDAEHRATLLAMSNTGWRNLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + +I+L  G    + +    ++ Q AE  L  + + FG+R+Y+ L R  
Sbjct: 108  VQKEWVLEQSEDLIILL--GQHSDVGKMLCSSNPQKAEPLLEAWIEKFGNRVYLALTRTE 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
            R  +     + V+LA  +++ +VA N+  F+ ++D+ AH+  + +A   V+    RP   
Sbjct: 166  RAGEEDFIQEAVKLAAKYQIGVVAHNDIHFIEKDDFYAHEARVCIADGYVLGDDKRPKNY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ Y K   +M  +FSD+P A+ENT  +A+RC+  LQ+    LP F   +        +
Sbjct: 226  SPEQYFKTGQQMSELFSDIPSAIENTYYVAQRCNVALQLGTYFLPDFPIPDG----YTID 281

Query: 309  NELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE RL       +         + Y +R+ +E+++I +M F GYFLIV D
Sbjct: 282  TYFEHLSRQGLEERLNHLYPISERDEDWEDIRKPYDERIKYEVDIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG + V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIEYVAQNYGRQAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            P       AI  + + ++         +     + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLATAIDMEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +R     
Sbjct: 522  KITDYSAVLCDPDGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIKSET 581

Query: 598  ---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               ++ +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLEIANVPLDDKDAYLVFAEANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  + +R +G E    +HPL++ +L+ T G+++YQEQVMQ AQ  +GY+L  AD+LR
Sbjct: 642  MDLIPDFIHRMHGGE-FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ FI GA++  I +  A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFIKGAAEKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TAW+K HYP EF+AA ++ EM N + I     D R   ++++PPSVN     F   D R
Sbjct: 761  HTAWLKAHYPSEFMAAVLSSEMQNTDSIVFLIDDCRNNKLEVLPPSVNMSLYHFHASDER 820

Query: 835  IY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               Y L AIKGVG    + ++++   + P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEQAMQSVIDSRIKEGPYKDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR     ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERSSLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK----QQKK 1008
            + E+  LG Y +GHP+DVY+  L+        E   T RG     A +VV       +  
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNELTPTRRGVTTVFAGLVVDIANFPNRIM 998

Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031
                     +T  +     E + 
Sbjct: 999  ---------ITLDDGTARVEISC 1012


>gi|229163596|ref|ZP_04291545.1| DNA polymerase III subunit alpha [Bacillus cereus R309803]
 gi|228619846|gb|EEK76723.1| DNA polymerase III subunit alpha [Bacillus cereus R309803]
          Length = 1105

 Score =  975 bits (2521), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1025 (36%), Positives = 585/1025 (57%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPIIG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++  +              +VLL     GYQ L+++ S +      K    I 
Sbjct: 62   LTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEGIP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    +    AE+   T++ +FGD  Y++LQ H   
Sbjct: 107  KKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARTYQNMFGD-FYISLQHHAIQ 164

Query: 193  DRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  D
Sbjct: 165  DELLLQEKLPEFINKVNIPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRLKTD 224

Query: 252  HY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             Y LK+  EM ++FS   EA+ NT +IA RC   +  H   LP++     +      +  
Sbjct: 225  QYYLKSSDEMGALFSQAEEAIYNTAKIAERCHVEIPFHVNQLPKYPVPSSE----TNDTY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     G+  R        G   + + QRL+ ELNVI+ M FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGMRKRY-------GAPKEVHIQRLNHELNVISSMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK-D 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  + +  +  
Sbjct: 453  AYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSIAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+  + G ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKQIDIRKLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  KNG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLKNGYEETSANKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    
Sbjct: 812  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGISRTNLWKSLKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA               A + G    K    +    +   +   E+  LGFY S +P  
Sbjct: 872  EYAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLGKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|293608355|ref|ZP_06690658.1| DNA polymerase III [Acinetobacter sp. SH024]
 gi|292828928|gb|EFF87290.1| DNA polymerase III [Acinetobacter sp. SH024]
          Length = 1187

 Score =  975 bits (2521), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1039 (36%), Positives = 587/1039 (56%), Gaps = 47/1039 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + ++++    DQ PA+A+TD +NL +A++F       GI+P+
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNSCLKKGIKPL 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + +D                      LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   LGSTIRLD---------------DAQHRATLLAMSNVGWKSLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + +I+L G  S  + +    ++ Q A   L  + + FG+R+Y+ L R  
Sbjct: 108  VQKEWVLEQH-QDIIVLLGQHS-DVGQMLCSSNPQKAAPLLEAWIEKFGNRVYLALTRTD 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     +  +LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   RPR  
Sbjct: 166  RPGEEDFIQEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADDRRPRLY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ + K  +EM+ +FSD+P A+ENT  IA+RC+  LQ+    LP +   +   I    +
Sbjct: 226  SPEQHFKTSNEMIELFSDIPSAIENTYNIAKRCNVSLQLGTYFLPDYPIPDGFTI----D 281

Query: 309  NELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE RL       +         + Y +R+D+E+ +I +M F GYFLIV D
Sbjct: 282  TYFEHLSKVGLEERLDYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            P       AI  + + ++         +     + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLATAIEMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +     D
Sbjct: 522  KITDFSAVLCDEDGTSRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSND 581

Query: 598  ---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               +S +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLIISHVPLDDAKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  + +R +G +    +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L  AD+LR
Sbjct: 642  MDLIPDFIHRMHGGD-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ F++GA++ GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFLAGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TAW+K HYP EF+AA M+ EM N + +     D R   ++++PPSVN     F   D++
Sbjct: 761  HTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYHFHASDDK 820

Query: 835  IY-YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               Y L AIKGVG    + ++++     P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEQAMQSVIDSRRQFGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR +   ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRQELKAFIPVKLNEITATRRGVTTVYAGLVIDVANFP---- 994

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
            +R+  V   +     E + 
Sbjct: 995  NRVVIV-LDDGTARIEVSC 1012


>gi|32266769|ref|NP_860801.1| DNA polymerase III subunit alpha [Helicobacter hepaticus ATCC 51449]
 gi|32262821|gb|AAP77867.1| DNA-dependent DNA polymerase III [Helicobacter hepaticus ATCC 51449]
          Length = 1218

 Score =  975 bits (2520), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/1084 (36%), Positives = 600/1084 (55%), Gaps = 71/1084 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL +H+ YSLL+GA  +  +  +I      ++AITD  N+F AL+F       G+ P
Sbjct: 2    SFTHLHLHTEYSLLDGANKIKFLAKRIRELGMESVAITDHGNMFGALDFYVSMKEEGLNP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +   D L     G         + L      GY+ L+ L S+ ++        
Sbjct: 62   IIGMEAYLHNGDTL-----GDKTIKQRFHLCLFAKNEIGYKNLMYLSSQSFIEG-FYYYP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDR----------AFFFNSSQVAEKRLLTFKKLFG 179
            RI  + L+E  +EGL+  +    G I+            F     +VA++  L +K +FG
Sbjct: 116  RINKALLRE-RSEGLVCSSACLQGEINWQLNTSNQRNVRFGAKGYEVAKEVALEYKDIFG 174

Query: 180  DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +  Y+ L RH   D+ + + Q+++L    ++ ++ATN++ +  +ED  A +V M VA   
Sbjct: 175  EDFYLELMRHGINDQLFIDEQILKLGRELDIKVIATNDTHYSLQEDASAQEVAMCVAMGK 234

Query: 239  VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--------- 288
              + KDR + +  + Y+K+  EM  +F D+PE LENT EIA++C   L +          
Sbjct: 235  TFNDKDRLKHSVKEFYVKSPQEMQKLFCDVPEVLENTQEIAQKCQLHLDLKNIEIKNKHT 294

Query: 289  -------APILPRFIEKECDDIQKE--------------EENELRNKAVAGLEVRLAQGA 327
                    P  P   +   +   KE              +      K   GLE RL    
Sbjct: 295  GEILLKNTPATPPTFKHTTNYALKENLPQILNCSLESIDDAVYFAFKCRQGLEERLKHIP 354

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                     Y++RL+ E+ VI+ MKF GY LIV DF+ +AK+NNIPVGPGRGS AGS+ A
Sbjct: 355  TESH---PIYKKRLEHEIEVISSMKFPGYMLIVWDFVNFAKQNNIPVGPGRGSAAGSLVA 411

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            Y+L IT+IDPL++ LLFERFLNP+R+SMPD D+DFCQ RR E+I YV N YG   VAQ+I
Sbjct: 412  YSLKITNIDPLKYDLLFERFLNPERVSMPDIDMDFCQRRRGEMIEYVANTYGKFNVAQVI 471

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ----------AIADDSR 497
            TFGSL AK  +RDV R L MPY+  D   KLIP +    ++            A   +SR
Sbjct: 472  TFGSLLAKGVIRDVARVLNMPYNDADAFAKLIPAELGITLTKHIGKDGKEKDGAWEKESR 531

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVT 556
             +E     P   ++ + +  LEGL R+A THAA IVI     L   VP+Y + + +   T
Sbjct: 532  IKELVEKSPLAKQVWDYALLLEGLKRNAGTHAAAIVIDSQEELWHKVPLYTNDKMNGVAT 591

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTK 615
            Q++M W+E   LIKFDFLGLKTLT++  +++ + +R   ++D S +  DD++ Y  + + 
Sbjct: 592  QYSMNWLEPVDLIKFDFLGLKTLTVIDDAINLIKKRYEKEIDFSTMEMDDYKVYETIQSG 651

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
             TLG+FQ+ES GM+   + ++P   ED++A++SLYRPGP+D I  +  RK+G  KI  + 
Sbjct: 652  NTLGLFQIESEGMQAIAKRLKPSNFEDVVAMISLYRPGPMDLIDDFVARKHGLVKIEYLI 711

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
              ++P+LK T GVI+YQEQVMQI Q + G+SL  AD++RRAMGKK  +EM + K+ F  G
Sbjct: 712  DALEPILKPTYGVIVYQEQVMQIVQTIGGFSLGGADLVRRAMGKKKLDEMLRLKKEFADG 771

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A K G ++  A +++E++ KFA YGFNKSHAAAY +I+YQTA++KT+Y  EF+AA +T E
Sbjct: 772  AQKQGYNRAKAEDLWEIIVKFAGYGFNKSHAAAYGMITYQTAYLKTYYEHEFMAAMLTSE 831

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----RIYYSLAAIKGVGTTTAR 851
             + +E I K+  + +   I+I+PP VN    +F VG+     +I + L+AIKG+G     
Sbjct: 832  TNKIESIAKYIDEVKSLGIEIVPPHVNISENNFGVGEFDGVKKIIFGLSAIKGLGDAPIE 891

Query: 852  HIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
            +I+E    +  + SLEDF +RVD  KL +R LE L+ +G LD  GYSR  +L+ +D +  
Sbjct: 892  NIIEEREKNGAYKSLEDFVARVDFSKLTKRSLEPLIKSGGLDNLGYSRKSMLEYIDILCD 951

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
              +   K +   H ++F  ++   +  + +      +     + E   +G Y SGHPLD 
Sbjct: 952  KGREKSKAQEMIHNSLFGEDEVEINIYLPITHKGEYDIRTLLDYEYECMGIYISGHPLDD 1011

Query: 971  YKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYE 1028
            +K  L+ + GI    E       +   L   V+S +++ ++K     G + F +   + E
Sbjct: 1012 FKDKLKNIKGIIKSLELENLEFNSVCMLVGKVLSIKRRISKKSNKPFGSIDFLDYGGKIE 1071

Query: 1029 ANFF 1032
               F
Sbjct: 1072 IMVF 1075


>gi|260910104|ref|ZP_05916781.1| DNA-directed DNA polymerase III alpha subunit [Prevotella sp. oral
            taxon 472 str. F0295]
 gi|260635608|gb|EEX53621.1| DNA-directed DNA polymerase III alpha subunit [Prevotella sp. oral
            taxon 472 str. F0295]
          Length = 1235

 Score =  975 bits (2520), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1116 (32%), Positives = 573/1116 (51%), Gaps = 103/1116 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA----- 64
             FVHL VH+ YS+L+G  S+  ++DK  A+    +A+TD  N+F   EF           
Sbjct: 3    DFVHLHVHTYYSILDGQSSIQRLVDKAIANGMGGMALTDHGNMFGTKEFYNYCKKVNAKR 62

Query: 65   --AGI---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
               G+   +PIIGC++ +          +      +   +++L     GY+ LI+LVSR 
Sbjct: 63   KEEGLPAFKPIIGCEMYVARHRKTDKVKE--NGDMSGYHLIVLAKNYTGYKNLIKLVSRA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++ D      R     L+    EGLI+ +   +G + R    N  + A +    + ++FG
Sbjct: 121  WV-DGYYMRPRTDREDLETYH-EGLIVCSACIAGEVPRKILRNDIEGAREAAQWYHRVFG 178

Query: 180  DRLYVNLQRHRGYDRYRESQ-------------VVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D Y  +              ++++A    + +V TN++ F+ +E+ E
Sbjct: 179  DDYYLELQRHEVKDPYIRANREAYPLQQRANKVMLEMAEEMGINVVCTNDAHFVDQENAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    +    R   +   + K R EM  +F DLP+A+ NTVEI  +      
Sbjct: 239  AHDHLLCLSTGKDLDDPTRMLYSKQEWFKTREEMNEVFGDLPQAMRNTVEILNKVETYSI 298

Query: 287  VHAPILPRFIEKECDDIQKE---------------------------------------- 306
             H+PI+P F   E    +++                                        
Sbjct: 299  DHSPIMPFFPIPEDFGTEEQWRERISEKELYDEFTSDENGQNQLPPEEGEDKIKKLGGYE 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L   A  G +    +        +++ R+R++FEL+++  M F GYFLI
Sbjct: 359  KLYRIKFEADYLAKLAYDGAKRLYGE------PLSEEVRERVNFELHIMKTMGFPGYFLI 412

Query: 360  VADFIQWA-KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A  + ++ VGPGRGS AGSV AY L IT IDP+++ LLFERFLNPDR+S+PD 
Sbjct: 413  VQDFINTAQNELDVMVGPGRGSAAGSVVAYCLGITKIDPIKYDLLFERFLNPDRISLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R  V+ +V++KYGH++VA IIT+G++  K +++DVGR  ++P   V+ LCKL
Sbjct: 473  DTDFDDDGRGRVLEWVEDKYGHDKVAHIITYGTMATKNSIKDVGRVEKVPLKIVNDLCKL 532

Query: 479  IPNDPAHPVSL---QAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP+     + +    AI      REA  + D  +   +  ++ LEG  R    HA G +I
Sbjct: 533  IPDKLPDGMKMSVANAIKAIPELREAEASADEGLRNTMMYAKMLEGTVRGTGIHACGTII 592

Query: 535  GDRPLSQLVPMYR-----DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
                +S  VP+       D    L  TQ++   IE+ GLIK DFLGLKTL++L+++++ +
Sbjct: 593  CRDAISDWVPVSTAEDKADPGHKLLCTQYDGHVIEETGLIKMDFLGLKTLSILKEAVENV 652

Query: 590  A-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
                G  +DL  IP DD +TY L     T+G FQ ES+GM++ L  +QP   ED+IA+ +
Sbjct: 653  RISTGETIDLEKIPIDDPKTYQLYCEGRTIGTFQFESAGMQKYLRELQPSVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK    K+    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPDFIARKRDPSKVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            ++D LR+AMGKK+  +MDK +  F  G  KNG  K +   I+E   KFA Y FNKSHA  
Sbjct: 773  QSDTLRKAMGKKLIAQMDKLETLFYEGGMKNGHPKEVLNKIWEDWKKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ +++QTA+ K HYP E++AA M+  + N+  I KF  + R   I+ + P VN   + F
Sbjct: 833  YSWVAFQTAYFKAHYPAEYMAAVMSRNLANIADITKFMDECRAMGIKTLGPDVNESRLKF 892

Query: 829  KVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V     I + LAAIKG+G   A+ I+ E   + P+ S+ D   RV+   +N++ +ESL 
Sbjct: 893  SVNKHGEIRFGLAAIKGMGDAAAQAIIQEREKNGPYTSVFDMVQRVNLSSVNKKAIESLA 952

Query: 887  FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
             +G  D FG +R     +       +DN+ +Y Q  +  +     ++F            
Sbjct: 953  LSGGFDSFGIARESYFGTDSKGSTFIDNLTRYGQLFQMEQQQMRNSLFGDSNAVEVATPP 1012

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIR 996
            + +    +S  R   E+ ++G Y S HPLD YK +L+ M   G  E    +A ++   + 
Sbjct: 1013 VPQAERWSSIERLNKERDLVGIYLSAHPLDDYKIVLQAMCNTGCNELEDKMALVQKAEVT 1072

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            LA MV + +   T+ G   G+VT  + +   E  FF
Sbjct: 1073 LAGMVTNTRSAVTKMGKPCGFVTIEDYSGSGELAFF 1108


>gi|311069419|ref|YP_003974342.1| DNA polymerase III DnaE [Bacillus atrophaeus 1942]
 gi|310869936|gb|ADP33411.1| DNA polymerase III DnaE [Bacillus atrophaeus 1942]
          Length = 1113

 Score =  974 bits (2519), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1026 (36%), Positives = 591/1026 (57%), Gaps = 37/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQVHS YSLL  A ++  ++ +       ++A+TD + ++ A++F +   A GI+P
Sbjct: 2    SFVHLQVHSGYSLLNSAAAVEELVKEADTLGYTSLALTDDHVMYGAIQFYKACKARGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    +   +N                +VLL  +  GYQ L+++ S +    Q K   
Sbjct: 62   IIGLTASVFTDEN----------EVEACPLVLLAKSNMGYQNLLKISSVL----QSKSKE 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             +   WL+    EG+I +T G  G I+          AE+  L  + +F  D  Y+  Q 
Sbjct: 108  GLKQKWLKSY-REGIIAITPGEKGYIETLLEAGLYDKAEQSALELQSVFGTDAFYLGYQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +G ++     +++L+    +P+ AT +  ++ +ED  A+  L A+     ++  +R   
Sbjct: 167  FKG-NQALSDHILRLSAKTGIPVAATGDVHYIRKEDKTAYRCLKAIKAGEKLADLNREE- 224

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            TPD  LK+  EM   + + PEAL  +V+IA +C   + +    LP F   +     K  +
Sbjct: 225  TPDLDLKSIEEMRMFYQEHPEALSASVQIAEQCHVDVNLGQTRLPSFPAPDG----KPAD 280

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L     +G++ R            +   +RL +EL+VI RMKFS YFLIV DF+++A 
Sbjct: 281  EYLAELCFSGMKERF-------KSPDERVIRRLQYELDVIKRMKFSDYFLIVWDFMKYAH 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N I  GPGRGS AGS+ AY L IT++DP++ +LLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 334  ENGIVTGPGRGSAAGSLVAYVLYITNVDPIKHNLLFERFLNPERVSMPDIDIDFPDTRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+I+YV+NKYG    AQIITFG+L AKAALRDVGR   +   + D+L KLIP+ P   + 
Sbjct: 394  EMIQYVKNKYGAMHAAQIITFGTLAAKAALRDVGRVFGVNPKEADQLAKLIPSKPGVTLE 453

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A     +  +       + ++  I++K+EGL RH STHAAG+V+ + PL+ +VP+  +
Sbjct: 454  -DARKMSPQLNQRLNESSLLSQVFSIAKKIEGLPRHTSTHAAGVVLSEEPLTGIVPLQ-E 511

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHE 607
                + +TQ+ M  +E  GL+K DFLGL+ LTL++     +  +  +K+D S I +DD +
Sbjct: 512  GHEGVYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESIKTMIEKEEKIKIDFSSISYDDEK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL+   T G+FQLESSGMR  L  ++P  +EDI+A+ +LYRPGP++NI ++ +RK+G
Sbjct: 572  TFSLLSKGDTTGVFQLESSGMRSVLRRLKPTGLEDIVAVNALYRPGPMENIPLFIDRKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +  +   H  +  +LK+T GVI+YQEQ+M IA  ++G++L EAD+LRRA+ KK K+ +D+
Sbjct: 632  RVPVHFPHNDLKDILKDTYGVIVYQEQIMVIASKMAGFTLGEADLLRRAVSKKKKDILDR 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I  Q A++K HYP+ F
Sbjct: 692  ERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHYPLYF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N +KI ++  +A+   I+I+PPSVN     F V +  + YSL A+K VG 
Sbjct: 752  MCGLLTSVIGNEDKIAQYLYEAKGNGIRILPPSVNKSSFPFTVENGAVRYSLRAVKNVGV 811

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +  + I +A  DK F+ L DFC RV SK +NR+ +E+L+ +GA+D FG +R  LL S+D 
Sbjct: 812  SAVKDIYKARKDKKFEDLFDFCFRVPSKSVNRKTIEALILSGAMDEFGQNRATLLASIDV 871

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++A+    +  +    +F  E  +FS K    +          + E+  LG YFS HP
Sbjct: 872  AAEHAELFSAD--DDQMGLFLEE--SFSIKPKYVETEEFPLVDLLQFEKETLGIYFSSHP 927

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L  ++  L   G     ++  + +   I L A+V   +  +T+ G  + ++T S+   E 
Sbjct: 928  LSAHRDRLSARGAVPILKAQQSEK-KQILLGALVTKTKTIRTKTGQNMSFLTLSDETGEI 986

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 987  EAVVFP 992


>gi|291302505|ref|YP_003513783.1| DNA polymerase III subunit alpha [Stackebrandtia nassauensis DSM
            44728]
 gi|290571725|gb|ADD44690.1| DNA polymerase III, alpha subunit [Stackebrandtia nassauensis DSM
            44728]
          Length = 1179

 Score =  974 bits (2519), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1068 (33%), Positives = 559/1068 (52%), Gaps = 55/1068 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL VH+ YS+L+GA  +  +  ++      +IA+TD  N++ A EF Q+A   GI
Sbjct: 2    SKDFVHLHVHTEYSMLDGAAKMRPMFAEVERLGMSSIAMTDHGNMYGAYEFYQEAKKTGI 61

Query: 68   QPIIGCQLDIDMQDN--LKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIG +  +   D    K    G+        +       + +  +   G + L++L S
Sbjct: 62   KPIIGIEAYLAPGDRAHKKPVRWGRPDQKSDDVSGGGAYTHMTMWAANGSGLRNLLKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
                  Q  Q  R+    L +   EG+I  TG  SG +      +    A      ++ +
Sbjct: 122  LASFEGQ-YQKPRMDAELLSKYA-EGIIATTGCPSGEVQTRLRLDQPDEALAAAAKYQDI 179

Query: 178  F-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  D  ++ L  H    +      ++ ++    LPL+ATN+S ++ + D + H  L+ V 
Sbjct: 180  FGKDNFFLELMDHGLDIETRVREGLLDISKKLGLPLLATNDSHYVHQHDSDNHAALLCVQ 239

Query: 236  HSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI--L 292
                ++  +R   + D +Y+K+ +EM  ++S+LPEA +NT+ IA R     +V A +  +
Sbjct: 240  SGKTLTDPNRFAFSGDGYYIKSPAEMRELWSELPEACDNTLLIAERIESYEEVFAEVDRM 299

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            PRF  KE +     E+  LR         R   G        Q+Y+ R+D EL V++ M 
Sbjct: 300  PRFPLKEGE----TEDILLRRDVEKYTPNRFPDGL------TQEYKDRIDRELGVMSAMG 349

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            FSGYFL+V D ++WAK   IP GPGRGS  GS+ AY L ITD+DP+  SL+FERFLNP+R
Sbjct: 350  FSGYFLVVGDLVRWAKSQKIPTGPGRGSATGSLVAYILQITDLDPIEHSLIFERFLNPER 409

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYS 470
            +S PD D+DF + RR EV++Y   K+G E VAQ+ITFG+++ KAAL+D  RA   Q  ++
Sbjct: 410  VSPPDIDLDFDERRRGEVMQYTVEKWGEENVAQVITFGTIKTKAALKDAARAHLGQPGFA 469

Query: 471  QVDRLCKLIPND-PAHPVSLQAIADD--------SRFREARLADPSVDRLLEISQKLEGL 521
              +R+ K +P    A  + L  I D         +  R     +P V ++ + ++ LEGL
Sbjct: 470  VAERIAKALPPPVAAQDIPLSGIVDPNHERYNEAAEVRALVENEPEVKQIFDTARGLEGL 529

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R+A  HA  ++I   PL   VP++        +T ++    E  GL+K DFLGL+ LT+
Sbjct: 530  IRNAGVHACAVIISSVPLLGQVPLWMRP-DGSVITGWDYPSCEAMGLLKMDFLGLRNLTV 588

Query: 582  LQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  ++D + +   V++    I  DD +T+ LL    + G+FQ E +GM+  L+ MQP   
Sbjct: 589  IGDAIDNVKRNHGVELSTETITLDDPKTFELLCRGESAGVFQFEGAGMQDLLKRMQPKKF 648

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQEQ 694
             DI A+ +LYRPGP+  +  + Y  R NG++    IHP +    +P+L ET  +++YQEQ
Sbjct: 649  GDIAAISALYRPGPMAANAHLNYAERANGRQSPEPIHPELKDALEPILGETFHLLVYQEQ 708

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VM IAQ L+GY+L  AD+LRRAMGKK KE ++K+ E+F +G + NG S      +++++ 
Sbjct: 709  VMAIAQQLAGYTLGGADLLRRAMGKKKKEIIEKEFEKFSNGMTANGYSMEACQTLWDVML 768

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNKSH A Y +++Y TA++K +YP E++AA +T   DN +K   +  D R+  I
Sbjct: 769  PFAGYAFNKSHTAGYGLVTYWTAYLKANYPAEYMAALLTSVGDNKDKSALYLADCRKLGI 828

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
            +++PP VN    +F      I + L AI+ VGT     I+    A   ++S  DF  + +
Sbjct: 829  KVLPPDVNESRRNFSAVGGDIRFGLGAIRNVGTGVVDSIVATREAKGNYESFSDFLQKSE 888

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
                N+RV+ESL+ AGA D   +SR  L +  + + +    V++       ++F      
Sbjct: 889  LPVCNKRVIESLIKAGAFDSLKHSRKALCERHEVLVESIVGVKRKEAEGQFDLFGGMLTP 948

Query: 934  FSDKITLE----KFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                         FS          E E+ +LG Y SGHPL+  + ILRK       + +
Sbjct: 949  DQPDAATPGGDTDFSGDDWPRKTTLEFEREMLGLYVSGHPLEGAEMILRKNSENRIADLL 1008

Query: 988  --ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G ++ +A ++ S +++ T++G      T  +     E  FFP
Sbjct: 1009 TSDIPDGTSVTIAGIISSLERRVTKQGKPWAKATVEDLDAAIECLFFP 1056


>gi|299770508|ref|YP_003732534.1| DNA polymerase III DnaE [Acinetobacter sp. DR1]
 gi|298700596|gb|ADI91161.1| DNA polymerase III DnaE [Acinetobacter sp. DR1]
          Length = 1187

 Score =  974 bits (2519), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1039 (36%), Positives = 585/1039 (56%), Gaps = 47/1039 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + ++++    DQ PA+A+TD +NL +A++F       GI+P+
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNACLKKGIKPL 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + +D                      LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   LGSTIRLD---------------DAQHRATLLAMSDVGWKSLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + +I+L G  S  + +    ++ Q A   L  + + FG+R+Y+ L R  
Sbjct: 108  VKKEWVLEQH-QDIIVLLGQHS-DVGQMLCSSNPQKAAPLLEAWLEKFGNRVYLALTRTD 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     +  +LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   RPR  
Sbjct: 166  RPGEEDFIQEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADNRRPRIY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ + K   EM+ +FSD+P A+ENT  IA+RC+  LQ+    LP +   +   I    +
Sbjct: 226  SPEQHFKTSDEMIELFSDIPSAIENTYHIAKRCNVKLQLGTYFLPDYPIPDGFTI----D 281

Query: 309  NELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE RL       +         + Y +R+D+E+ +I +M F GYFLIV D
Sbjct: 282  TYFEHLSKVGLEERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            P       AI  + + ++         +     + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLATAIDMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGVTRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +     D
Sbjct: 522  KITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSND 581

Query: 598  ---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               +  +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  QLNILHVPLDDAKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  + +R +G +    +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L  AD+LR
Sbjct: 642  MDLIPDFIHRMHGGD-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ F+ GA++ GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFLEGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TAW+K HYP EF+AA MT EM N + +     D R  N++++PPSVN     F   +++
Sbjct: 761  HTAWLKAHYPAEFMAAVMTSEMQNTDSVVFLIDDCRNNNLEVLPPSVNMSTYHFHASNDK 820

Query: 835  IY-YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               Y L AIKGVG    + ++++     P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEQAMQSVIDSRRQFGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR +   ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRQELKAFIPVKLNEITATRRGVTTVYAGLVIDVANFP---- 994

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
            +R+  V   +     E + 
Sbjct: 995  NRVVIV-LDDGTARIEVSC 1012


>gi|315639407|ref|ZP_07894567.1| DNA-directed DNA polymerase III alpha subunit [Campylobacter
            upsaliensis JV21]
 gi|315480512|gb|EFU71156.1| DNA-directed DNA polymerase III alpha subunit [Campylobacter
            upsaliensis JV21]
          Length = 1197

 Score =  974 bits (2519), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1060 (35%), Positives = 594/1060 (56%), Gaps = 49/1060 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YS+L+GA  L  +   +      ++A+TD  N+F A++F Q   + G++PI
Sbjct: 4    FTHLHLHTEYSMLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMRSHGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D+L               + L      GY+ L+ L S+ Y+        R
Sbjct: 64   IGLEAYLHNMDDL-----SDKSSRQRFHLCLYAKNEIGYKNLMYLSSQSYIHGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTFKKLFGD 180
            I    L E  +EGLI  +    G ++            F     + A++  L +K++FGD
Sbjct: 118  INKKLL-EKHSEGLICSSACLQGEVNWHLNIYNERNVRFGAKGYEAAKEAALWYKRVFGD 176

Query: 181  RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+   ++ ++ATN++ +  +E  EAH+V M +     
Sbjct: 177  DFYFEIMRHGINDQRAIDDDIIRLSKELDIKIIATNDTHYTFKERAEAHEVFMCIGMGKR 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
            ++  DR R +  + Y+K   +M  +F+D+PEA+ NT ++A +C+  L++  P  P F   
Sbjct: 237  LNDPDRMRHSVKEFYVKTSEQMSELFADIPEAISNTQDLANKCNLELKLGDPTPPNFKFT 296

Query: 296  --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                KE D    +E+ E           +    GLE RL      K     +Y+ RL+ E
Sbjct: 297  REYAKEFDITLPQEKVEFSFENDDLVFEHLCRKGLEERLKFVDEGKH---DEYKARLETE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            + +I  MKFSGY LIV DFI+ AK  NIPVGPGRGS AGS+ AYAL ITDIDPL ++LLF
Sbjct: 354  IKIIKEMKFSGYMLIVHDFIKVAKDKNIPVGPGRGSAAGSLVAYALKITDIDPLPYNLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFC+DRRDEVI YV +KYG ++VAQ+ TF  L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCRDRRDEVIDYVIDKYGSDKVAQVSTFNKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L +    VD   KL+P +    +  +A   + + +E     P    L E ++ LEGL R+
Sbjct: 474  LDISLQDVDEFIKLVPEELKITLD-EAYEKEPKIKEFIEKHPKGKELWEYAKALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L    P++R  ++D    +TQ++   +E   LIKFDFLGLKTLTL+
Sbjct: 533  AGMHAAGLVISNESLWNKTPLFRQSKNDERHLITQYSKDHLEDVDLIKFDFLGLKTLTLI 592

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R    +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  HNAIKLIKERYNKDIVWESIDVNDSKVYKTIQSGNTLGIFQIESDGMQSLNARLKPENFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            D+IA+++LYRPGP+++ +   + +RK+G +KI+    ++  +L+ T GVI+YQEQVMQI 
Sbjct: 653  DLIAVLALYRPGPMESGMLDDFIDRKHGLKKIIYPFDVLKEVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K+ F +GA K G ++  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMAKLKDEFANGAEKQGYNRAKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAY +I++QTA++KT+YP EF+AA +T E + +E +  + ++ ++ NI+++PP
Sbjct: 773  GFNKSHSAAYGLITFQTAYLKTYYPSEFMAALLTSEQNKIENVAMYIEEMKKMNIKLLPP 832

Query: 820  SVNT-----PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
             +N        +  + G   I Y L AIK VG     +++E    +  F  L DF S++D
Sbjct: 833  RINKAISEFSAIKQEDGTEAIVYGLGAIKSVGGPAIENVLELRSKNGDFKDLHDFLSKID 892

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            + K+NRR LE  + AG+ D FG++R  L  +LD + + A+ + + R N   ++F  E+  
Sbjct: 893  TAKINRRTLEGFIKAGSFDDFGFTRKCLFNNLDTLAESARKMAEVRKNSASSLFGAEELN 952

Query: 934  FSDKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               KI +    S   +  +   E+ +LG Y SGHPLD +   +  +      +      G
Sbjct: 953  ADTKINIVVDNSEFEAMEKLGYEKEILGIYISGHPLDKFFEEINGIEYTKSIDFENLKGG 1012

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              I     V + +   ++ G R G +   +    +E   F
Sbjct: 1013 GEILSIGKVENFKSLMSKSGKRYGILEILDFYSSFEVTIF 1052


>gi|145588791|ref|YP_001155388.1| DNA polymerase III, alpha subunit [Polynucleobacter necessarius
            subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047197|gb|ABP33824.1| DNA polymerase III, alpha subunit [Polynucleobacter necessarius
            subsp. asymbioticus QLW-P1DMWA-1]
          Length = 1204

 Score =  974 bits (2519), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1072 (36%), Positives = 593/1072 (55%), Gaps = 67/1072 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SP FVHL++HS +S+ +G + +++ +     D+  A+A+TD +NLF  + F   A + GI
Sbjct: 3    SPRFVHLRIHSEFSITDGVVRIDDAVATAVKDEMGALALTDLSNLFGLVRFYTAARSGGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G  + +                     ++LLV    GY  L +L+S+  L +Q + 
Sbjct: 63   KPIAGADVWVSNP----------QDPDQPHRLLLLVQNHSGYLNLCQLLSKASLDNQSRG 112

Query: 128  SVRICLSWLQEIG------------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
               + L+W  E                GLI L+   +G +  A   +   +A+   L  +
Sbjct: 113  RAEVDLAWFSEPAAKAEDKAAKRTMAYGLIALSAARNGEVGAALLADQEDMAKAAALRLE 172

Query: 176  KLFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            KLF    Y+ +QR     D         LA   +LP+VAT+   F+   D+ AH+  + +
Sbjct: 173  KLFPKSFYIEIQRGGHPQDEKHLQLACHLASELKLPVVATHPVQFMQRSDFIAHEARVCI 232

Query: 235  AHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            A   ++    R +    + Y   + EM   F+DLP A+ N+VEIA+RC+  L +  P LP
Sbjct: 233  AEGELLGNPRRQKKFNDEQYFLTQEEMEKRFADLPAAIANSVEIAKRCNLSLVLGQPRLP 292

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIAR 350
             F       +    ++ L  ++  GLE  + +        A++   Y  RL FE+  I++
Sbjct: 293  DFPTPPGITL----DDYLLQQSEVGLERHMEKNFPDPEERAKEMSRYHDRLVFEVKTISQ 348

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F GYFLIVADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP
Sbjct: 349  MGFPGYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNP 408

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFDIDFCQ  RD VI+YV++KYG + V+QI TFG++ A+AA+RDVGR L+  Y+
Sbjct: 409  ERVSMPDFDIDFCQHGRDRVIQYVKDKYGKDAVSQIATFGTMAARAAIRDVGRVLEQGYN 468

Query: 471  QVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
             VD + KL+PN P   ++++ A  ++ +  E    +  V +LL ++Q+LEG+ R+   HA
Sbjct: 469  FVDGIAKLVPNKPGQYMTIEMAKKEEKQLAEREKNEDEVRQLLSLAQQLEGMTRNVGMHA 528

Query: 530  AGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
             G++I    L+   P+Y    +D  S   ++QF+   +E  GL+KFDFLGL TLT+L  +
Sbjct: 529  GGVLIAPGRLTDFCPLYTQESKDQDSSSVISQFDKDDVEAIGLVKFDFLGLTTLTILAAA 588

Query: 586  LDFLAQ---RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
              ++          D+  IP DD + + +L    T+ +FQLES GM+  L   +PD  ED
Sbjct: 589  ERWIKALHADRKDWDIGEIPLDDEKAFDVLKKANTVAVFQLESRGMQGMLREAKPDRFED 648

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            IIALV+LYRPGP+D I  +  RK+G++K+    P I+P+L+ET G+++YQEQVMQ+AQ++
Sbjct: 649  IIALVALYRPGPMDLIPDFIERKHGRQKVEYPDPRIEPVLRETYGIMVYQEQVMQMAQMI 708

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
             GYSL  AD+LRRAMGKK  EEM + ++ F  GA   GIS+  A  I++L+ +FA YGFN
Sbjct: 709  GGYSLGGADMLRRAMGKKKPEEMAQHRKIFSDGAKAGGISEAKANEIYDLMERFAGYGFN 768

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            KSHAAAYA+++YQTAW+K +YP EF+AA+++L MD+ +K+K    D     I++  P +N
Sbjct: 769  KSHAAAYALLAYQTAWLKAYYPAEFMAANLSLAMDDTDKVKILYDDCLVNQIRVFSPDIN 828

Query: 823  TPCVDFKV----------GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871
            T   +F              + I Y L A++G G      I++A  AD PF  L DFC+R
Sbjct: 829  TGVYEFTPLRAPDATPDSPISHIRYGLGAVRGTGEAAIESIVKAREADGPFKDLFDFCAR 888

Query: 872  VDSKKLNRRVLESLVFAGALDCF-------GYS----RMQLLQSLDNIQKYAQWVEKNRT 920
            VD +++NRR +E+L+ AGA D         G +    R  LL SL    +     +   +
Sbjct: 889  VDRRQVNRRAIEALMRAGAFDSLYRDSVPAGGNLYDIRSTLLASLARAIE--AAEQAEAS 946

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                ++F            L +  + +   R + E+  LG   +GH  D Y+        
Sbjct: 947  IHQVSLFEVAGEEHRHLPELVREPIWSEKKRLQEEKASLGLCLTGHMFDAYRDETAHFIR 1006

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   + V    G +  +A ++ S +    ++G R+   T  +     E   +
Sbjct: 1007 QPLSKLVE---GKDQLVAGIITSARMLTGQRG-RMMIATIDDGTAAVEVTLY 1054


>gi|320102869|ref|YP_004178460.1| DNA polymerase III subunit alpha [Isosphaera pallida ATCC 43644]
 gi|319750151|gb|ADV61911.1| DNA polymerase III, alpha subunit [Isosphaera pallida ATCC 43644]
          Length = 1243

 Score =  974 bits (2519), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1101 (34%), Positives = 584/1101 (53%), Gaps = 86/1101 (7%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +   P FVHL  HS YSLL+GA  + +++ +  +    A+A+TD  NL +A+EF +++ 
Sbjct: 8    AMSHRP-FVHLHCHSHYSLLDGASKIPDLIARAKSLGMNALAVTDHGNLHAAMEFLRESK 66

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            AA  QPIIG +  +           G     T   + LL   AEG++ L+ L S+ +L  
Sbjct: 67   AADFQPIIGLEAYVAPGHRASKIPGGCNGQETSFHLTLLARDAEGFRNLMRLSSKAFLEG 126

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRL 182
                  RI    L E  ++GLI L+G +S         +  + AE+    + K+F  +  
Sbjct: 127  -FYYKPRIDKEIL-ERHSKGLICLSGCASSEFSDFLLHDRFEEAERLAAWYLKVFGPENF 184

Query: 183  YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ +Q +     +  E + + LA    LPLVAT+++ +L+ ED  AHDVL+ +      +
Sbjct: 185  FIEIQNNGVAIQKECEEKSIDLARRMGLPLVATSDAHYLTREDAPAHDVLLCINTGKTFN 244

Query: 242  QKDRPRVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFI-LQVHAPILPRFIEKE 299
               R R   D +  ++  EM        +AL+ + +IA R  +  L +     P F    
Sbjct: 245  DPTRMRFETDEFFIRSPEEMYRAMPGHEDALKRSADIAARIDYSGLDLGTRRFPVFKPPT 304

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 +  E  LR     GL  R             +  +RL+ EL +I RM F+ YFLI
Sbjct: 305  G----QTPEEYLRALCQRGLVERYGNNP------PPEATRRLEHELEIILRMGFASYFLI 354

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DF+++A++  IP    RGS  G++ +Y L ++ +DPL + LLFERFL+P+R   PD D
Sbjct: 355  VWDFVRFARERGIP-NSARGSACGALVSYVLHLSHVDPLTYDLLFERFLDPNRSEAPDID 413

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID CQ+RR EVI YV+NKYG E VAQI TFG+L A+A LRDVGR L +P S+VD++ KL+
Sbjct: 414  IDLCQERRYEVIEYVRNKYGVENVAQIGTFGTLAARAVLRDVGRVLGIPLSKVDQVAKLV 473

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P      +  QAI  +   R     DP V R+L+  ++LEGL R+  THAAG+VI DRPL
Sbjct: 474  PQVLNISLD-QAIKQEPELRRLGELDPEVGRMLDYGRRLEGLVRNVGTHAAGVVIADRPL 532

Query: 540  SQLVPMYR----DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
             +LVP+ +    D   ++  TQ++M  +EKAGL+K DFLGL+ LT+L +++  +  R  +
Sbjct: 533  IELVPLQKLPNKDKEKEVVTTQWDMGDVEKAGLLKMDFLGLRNLTILDRAVRLIRARHPR 592

Query: 596  VD--LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            +D  +  +P DD +T+ LL    T G+FQLES+G+R  L  M+PD   DIIA  +LYRPG
Sbjct: 593  LDFRIENLPLDDPDTFALLQKGETKGVFQLESAGIRDLLIKMKPDVFNDIIATNALYRPG 652

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P++  +V  Y + K+G+++    HP++  +L+ET GV++YQEQVM+I   L G  LS A 
Sbjct: 653  PLNGGMVDDYIDCKHGRKQPNYPHPVMREILEETHGVMVYQEQVMRILNRLGGIELSAAY 712

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
               +A+ KK  E + K K +F++GA + G++K  A  IF+L+  F  YGFNKSH+ AYA+
Sbjct: 713  QCIKAISKKKTEVIAKNKAQFVAGAVERGLAKEKAEEIFDLIEYFGGYGFNKSHSTAYAL 772

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNV--EKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            ++YQTA++K H+P E++AA ++ E+D    +K+ +  +D R+  I+++PP +N+   +F 
Sbjct: 773  VAYQTAYLKAHFPTEYMAALLSSEIDGAERDKLVEHIEDCRRMGIEVLPPDINSGEAEFA 832

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V    +I +SLAAIKGVG      I++   +  PF  + DF  RV S+ +    +E L+ 
Sbjct: 833  VVDQGKIAFSLAAIKGVGIKAVEAIVKERNERGPFAHIGDFLERVPSQVVTSSTVEILIK 892

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWV----EKNRTNKHENIFAHEKGTFSDKITLEKF 943
            AGA D  G +R QLL +L  + + AQ      ++ + N  + I       F  K      
Sbjct: 893  AGAFDHLGGNRAQLLAALPRLVQAAQTAQEDRKRGQRNLFDAIADDPPKPFRGKTAKVDA 952

Query: 944  ----------------------------------SVE-------------NSSVRFENEQ 956
                                              S E               S++   E+
Sbjct: 953  NGHPHANGSAHVQGNGSRHANGSAVAAATDSHGRSEEIAALLNLPNLPELADSLKLAEEK 1012

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK---TRKG- 1012
            +VLGFY S HPL  +  ++R +     ++         I L  M+ S Q K    +R G 
Sbjct: 1013 KVLGFYMSSHPLTRHAAMIRALASHSIDQLADVPEKTEIILGGMIASMQIKTVQKSRSGL 1072

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
            +R+  +TF +      A  +P
Sbjct: 1073 TRMAKLTFEDLTGSMPAMLWP 1093


>gi|86742845|ref|YP_483245.1| DNA polymerase III subunit alpha [Frankia sp. CcI3]
 gi|86569707|gb|ABD13516.1| DNA polymerase III, alpha subunit [Frankia sp. CcI3]
          Length = 1249

 Score =  974 bits (2518), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/1073 (31%), Positives = 552/1073 (51%), Gaps = 59/1073 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL VH+ YS+L+GA     +  + A    PA+ +TD  N+F A EF Q A +AG+
Sbjct: 3    TDSFVHLHVHTEYSMLDGAAKTGLLFKEAAKLGMPAVGMTDHGNMFGAYEFYQGAKSAGV 62

Query: 68   QPIIGCQLDIDMQDN------LKMTNQGKTPFPT-----------VPSIVLLVSTAEGYQ 110
            +PIIG +  +  +        L      +   P               + +L + A G +
Sbjct: 63   KPIIGIEAYLAPESRHHKRPVLWGERSQRDVDPAGEGGDVSGGGAYTHMTMLAANAAGLR 122

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L  L S   +     +  R+    + +  +EG+I  TG  SG +           A   
Sbjct: 123  NLFRLSSIASIEG-YYRKPRMDHELVSQY-SEGIIATTGCPSGEVQTRLRLGQFDKALAA 180

Query: 171  LLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              T++++F  D  ++ L  H    +R     ++ +     L  +ATN+S +++++   +H
Sbjct: 181  AATYQEVFGADNFFLELMDHGLPIERSVRQGLLDIGDKLGLRPLATNDSHYVTQDQAGSH 240

Query: 229  DVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQ 286
            +VL+ V     +    R +     +YLK+  EM +++ S++P A ++++ IA R      
Sbjct: 241  EVLLCVGTGKKLDDPTRFKFDGSGYYLKSSEEMRNLWDSEVPGACDSSLLIAERVESYDD 300

Query: 287  VHA--PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            V      +PR+     +     + + LR +   GL  R   G  A      D  +R+D+E
Sbjct: 301  VFKFVDRMPRYPVPAGE----TQLSWLRKEIDRGLTWRFPAGVPA------DVVERVDYE 350

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            + VI +M F  YFL+VAD  ++A+   I +GPGRGS  GS+ AY L IT+++P+  +L+F
Sbjct: 351  VGVIDKMGFPAYFLVVADICKFARDRGIGLGPGRGSATGSMIAYILGITELNPIEHALIF 410

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+S PD D+DF + RR EVIRY+  +YG +RVAQI TFG+++AKAA++D  R 
Sbjct: 411  ERFLNPERISPPDIDLDFDERRRGEVIRYITEQYGEDRVAQINTFGTIKAKAAIKDSCRV 470

Query: 465  LQMPYSQVDRLCKLIPND-PAHPVSLQAIADD--------SRFREARLADPSVDRLLEIS 515
            L   Y+  D++ K +P D     + L  I D         +  R     D  V ++++ +
Sbjct: 471  LGYDYALGDKISKAMPPDVMGQGIPLAGIFDPNHERYGEAAEVRAQYETDTKVRKVIDTA 530

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + LEGL R    HAAG+++   PL  ++P++R       +T F     E+ GL+K D LG
Sbjct: 531  RGLEGLTRGTGVHAAGVILCSEPLLDVLPIHRRDNDGAIITGFPFPQCEEMGLLKMDCLG 590

Query: 576  LKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L+ LT++  +++ + + R V +DLS +P +D + + LL    TLG+FQL+   MR  L  
Sbjct: 591  LRNLTVIGDAIEAVKRNRNVDIDLSTLPLEDAKAFELLARGDTLGVFQLDGGPMRNLLRL 650

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGV 688
            M P    DI A+++LYRPGP+  ++ + Y +RKNG+++I+ IHP +    +P+L ET  +
Sbjct: 651  MAPTKFGDIAAVLALYRPGPMAANSHIEYADRKNGRKEILPIHPELAEALEPILGETYHL 710

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++YQEQVM IA+ L+GYSL  AD+LRRAMGKK KE +DK+  RF +G  + G +      
Sbjct: 711  VVYQEQVMAIARELAGYSLGGADLLRRAMGKKKKEILDKEFARFSAGMKERGYTDAAVQA 770

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++++L  F+ YGFNKSH A Y V+S+ TA++K +YP EF+AA +T   D+ +K+  +  +
Sbjct: 771  LWDVLVPFSGYGFNKSHTAGYGVVSFWTAYLKANYPAEFMAALLTSVGDDKDKMAVYLAE 830

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLED 867
             R+  IQ++PP VN   + F    + I + L A++ VG      I  A      ++S  D
Sbjct: 831  TRRMGIQVLPPDVNESDLRFGAVGDSIRFGLGAVRNVGENVVASIAAARRRKGAYESFAD 890

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F  +VD    N+R ++SL+ AGA D  G+ R  L+   +N        ++       ++F
Sbjct: 891  FLQKVDIGVCNKRTIDSLIKAGAFDSLGHHRRVLVNVHENAIDAVIITKRAEAIGQFDLF 950

Query: 928  AHEKGTFSDKITLEKF------SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                    ++                       E+ +LG Y S HPL+  +  L +    
Sbjct: 951  GDGGAGEEEESPGLGLDLDLSGPEWPKKELLAQERDMLGLYVSSHPLEGAERALDRHRDT 1010

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
               +      G  +++A ++    ++  +        VT  +     E  FFP
Sbjct: 1011 RIVDLAEANDGTTVQIAGIISKIDRRINKNTAKAWAIVTVEDLDASVEVLFFP 1063


>gi|300726853|ref|ZP_07060283.1| DNA polymerase III, alpha subunit [Prevotella bryantii B14]
 gi|299775966|gb|EFI72546.1| DNA polymerase III, alpha subunit [Prevotella bryantii B14]
          Length = 1235

 Score =  974 bits (2518), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1114 (33%), Positives = 553/1114 (49%), Gaps = 99/1114 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62
             FVHL VH+ YS+L+G   +  ++DK   D    +AITD   +F   EF           
Sbjct: 3    DFVHLHVHTHYSILDGQSKIPRLVDKAIQDGMKGMAITDHGVMFGIKEFVDYCSGVNKGR 62

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
               G++P            + ++ ++ K     +   +++L    EGY+ LI+LVSR ++
Sbjct: 63   KKEGLEPFKPIIGCEMYVAHHRLEDKVKENGDQSGYHLIVLAKNYEGYKNLIKLVSRSWV 122

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             D      R     L++   EGLI+ +   +G +           A + L  + ++FG+ 
Sbjct: 123  -DGYYYRPRTDRVDLEKYH-EGLIVCSACIAGEVPAKIIKGDIAGAREALEWYHRVFGED 180

Query: 182  LYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             Y+ LQRH   D             +     ++  A  + + L+ +N+  F  +E  EAH
Sbjct: 181  YYLELQRHEVKDPVIMANREAFPLQQKANKVLIDFAKEYGIKLICSNDVHFEDKETAEAH 240

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            D L+ ++    +    R R +   + K R EM  +FSD+PEAL NT++I  +       H
Sbjct: 241  DHLLCLSTGKDLDDPMRMRYSKQEWFKTREEMNEVFSDVPEALSNTLDILDKVEMYSIDH 300

Query: 289  APILPRFIEKE----CDDIQ---------------------------------------- 304
             PI+P F   E     DDI+                                        
Sbjct: 301  GPIMPFFPIPESFGTEDDIRKKFSTEDLLKEFSSDENGDNTLPREDGLKKIESLGGWDKV 360

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               K E   L   A  G +              Q+ ++ ++FEL+V+  M F GYFLIV+
Sbjct: 361  YRIKYEAEYLAKLAYDGAKKLYGD------PLPQNVKEHVNFELHVMKTMGFPGYFLIVS 414

Query: 362  DFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            DFI+ A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D 
Sbjct: 415  DFIRAAREELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDT 474

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  D R +V+R+V +KYGHE  A IIT+ S+  K +++DV R  ++P  + + LCK IP
Sbjct: 475  DFDDDGRGKVLRWVMDKYGHENCAHIITYSSMATKNSIKDVARVEKLPLDRSNALCKAIP 534

Query: 481  NDPAHPVSL---QAIADDSRFREAR-LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +     + +    AI      REA   +DP     ++ ++ LEG  R    HA G +I  
Sbjct: 535  DRLPDGLKMNLTNAIKCTPELREAESSSDPRERNTIKYAKMLEGTVRGTGIHACGFIICR 594

Query: 537  RPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             P+S  VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   + Q
Sbjct: 595  DPISNWVPVSTADDPDFPGLKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVVKQ 654

Query: 592  RG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
               V+VDL  IP DD  TY L     T+G FQ ES+GM++ L  ++P   ED+IA+ +LY
Sbjct: 655  TTGVEVDLDNIPIDDELTYKLYQEGRTIGTFQFESAGMQKYLRELKPTVFEDLIAMNALY 714

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  +  RKNG+E+I    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+
Sbjct: 715  RPGPMDYIPSFIARKNGREEIKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLASFTRGES 774

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D LR+AMGKK K  +D+ K +F+    +NG    +   I+    KFA Y FNKSHA  Y+
Sbjct: 775  DALRKAMGKKKKAIVDQMKPKFLKQGQENGHDPKVLEKIWGDWEKFASYAFNKSHATCYS 834

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++YQTA+MK HYP EF+AA MT     + +I K  ++ +   IQ + P VN     F V
Sbjct: 835  WVAYQTAYMKAHYPAEFMAALMTRRFSQITEITKLMEECKSMGIQTLGPDVNESYSGFGV 894

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D   I + L+AIKG+G   A  I+     + P+ S+ DF  RVD   +NR+  ESL  +
Sbjct: 895  NDKGEIRFGLSAIKGMGGNAAASIVAERQKNGPYKSIFDFAERVDFGSVNRKAFESLALS 954

Query: 889  GALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            G  D FG  R Q   +       LD + KY Q  +  +     ++F            + 
Sbjct: 955  GGFDGFGLRREQYFGTSAKGEVFLDTLVKYGQLFQAEQMEAQTSLFGGADAIEIATPPIP 1014

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG---IKGYEESVATIRGNNIRLA 998
            +    ++  +   E+ ++G Y S HPLD Y  +L  M        E+     +  +I L 
Sbjct: 1015 EGEQWSTIEKLNRERDLVGIYISAHPLDDYSIVLNSMCNTHCTEIEDKAELAKKEDIVLG 1074

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +V   + K T+ G   G+VT  +     E  FF
Sbjct: 1075 GIVTGVKSKFTKNGKPCGFVTIEDFEGSGELAFF 1108


>gi|86742759|ref|YP_483159.1| DNA polymerase III subunit alpha [Frankia sp. CcI3]
 gi|86569621|gb|ABD13430.1| DNA polymerase III, alpha subunit [Frankia sp. CcI3]
          Length = 1183

 Score =  974 bits (2518), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/1073 (31%), Positives = 552/1073 (51%), Gaps = 59/1073 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL VH+ YS+L+GA     +  + A    PA+ +TD  N+F A EF Q A +AG+
Sbjct: 3    TDSFVHLHVHTEYSMLDGAAKTGLLFKEAAKLGMPAVGMTDHGNMFGAYEFYQGAKSAGV 62

Query: 68   QPIIGCQLDIDMQDN------LKMTNQGKTPFPT-----------VPSIVLLVSTAEGYQ 110
            +PIIG +  +  +        L      +   P               + +L + A G +
Sbjct: 63   KPIIGIEAYLAPESRHHKRPVLWGERSQRDVDPAGEGGDVSGGGAYTHMTMLAANAAGLR 122

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L  L S   +     +  R+    + +  +EG+I  TG  SG +           A   
Sbjct: 123  NLFRLSSIASIEG-YYRKPRMDHELVSQY-SEGIIATTGCPSGEVQTRLRLGQFDKALAA 180

Query: 171  LLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              T++++F  D  ++ L  H    +R     ++ +     L  +ATN+S +++++   +H
Sbjct: 181  AATYQEVFGADNFFLELMDHGLPIERSVRQGLLDIGDKLGLRPLATNDSHYVTQDQAGSH 240

Query: 229  DVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQ 286
            +VL+ V     +    R +     +YLK+  EM +++ S++P A ++++ IA R      
Sbjct: 241  EVLLCVGTGKKLDDPTRFKFDGSGYYLKSSEEMRNLWDSEVPGACDSSLLIAERVESYDD 300

Query: 287  VHA--PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            V      +PR+     +     + + LR +   GL  R   G  A      D  +R+D+E
Sbjct: 301  VFKFVDRMPRYPVPAGE----TQLSWLRKEIDRGLTWRFPAGVPA------DVVERVDYE 350

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            + VI +M F  YFL+VAD  ++A+   I +GPGRGS  GS+ AY L IT+++P+  +L+F
Sbjct: 351  VGVIDKMGFPAYFLVVADICKFARDRGIGLGPGRGSATGSMIAYILGITELNPIEHALIF 410

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+S PD D+DF + RR EVIRY+  +YG +RVAQI TFG+++AKAA++D  R 
Sbjct: 411  ERFLNPERISPPDIDLDFDERRRGEVIRYITEQYGEDRVAQINTFGTIKAKAAIKDSCRV 470

Query: 465  LQMPYSQVDRLCKLIPND-PAHPVSLQAIADD--------SRFREARLADPSVDRLLEIS 515
            L   Y+  D++ K +P D     + L  I D         +  R     D  V ++++ +
Sbjct: 471  LGYDYALGDKISKAMPPDVMGQGIPLAGIFDPNHERYGEAAEVRAQYETDTKVRKVIDTA 530

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + LEGL R    HAAG+++   PL  ++P++R       +T F     E+ GL+K D LG
Sbjct: 531  RGLEGLTRGTGVHAAGVILCSEPLLDVLPIHRRDNDGAIITGFPFPQCEEMGLLKMDCLG 590

Query: 576  LKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L+ LT++  +++ + + R V +DLS +P +D + + LL    TLG+FQL+   MR  L  
Sbjct: 591  LRNLTVIGDAIEAVKRNRNVDIDLSTLPLEDAKAFELLARGDTLGVFQLDGGPMRNLLRL 650

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGV 688
            M P    DI A+++LYRPGP+  ++ + Y +RKNG+++I+ IHP +    +P+L ET  +
Sbjct: 651  MAPTKFGDIAAVLALYRPGPMAANSHIEYADRKNGRKEILPIHPELAEALEPILGETYHL 710

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++YQEQVM IA+ L+GYSL  AD+LRRAMGKK KE +DK+  RF +G  + G +      
Sbjct: 711  VVYQEQVMAIARELAGYSLGGADLLRRAMGKKKKEILDKEFARFSAGMKERGYTDAAVQA 770

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++++L  F+ YGFNKSH A Y V+S+ TA++K +YP EF+AA +T   D+ +K+  +  +
Sbjct: 771  LWDVLVPFSGYGFNKSHTAGYGVVSFWTAYLKANYPAEFMAALLTSVGDDKDKMAVYLAE 830

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLED 867
             R+  IQ++PP VN   + F    + I + L A++ VG      I  A      ++S  D
Sbjct: 831  TRRMGIQVLPPDVNESDLRFGAVGDSIRFGLGAVRNVGENVVASIAAARRRKGAYESFAD 890

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F  +VD    N+R ++SL+ AGA D  G+ R  L+   +N        ++       ++F
Sbjct: 891  FLQKVDIGVCNKRTIDSLIKAGAFDSLGHHRRVLVNVHENAIDAVIITKRAEAIGQFDLF 950

Query: 928  AHEKGTFSDKITLEKF------SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                    ++                       E+ +LG Y S HPL+  +  L +    
Sbjct: 951  GDGGAGEEEESPGLGLDLDLSGPEWPKKELLAQERDMLGLYVSSHPLEGAERALDRHRDT 1010

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
               +      G  +++A ++    ++  +        VT  +     E  FFP
Sbjct: 1011 RIVDLAEANDGTTVQIAGIISKIDRRINKNTAKAWAIVTVEDLDASVEVLFFP 1063


>gi|294650615|ref|ZP_06727970.1| DNA-directed DNA polymerase III alpha subunit [Acinetobacter
            haemolyticus ATCC 19194]
 gi|292823498|gb|EFF82346.1| DNA-directed DNA polymerase III alpha subunit [Acinetobacter
            haemolyticus ATCC 19194]
          Length = 1187

 Score =  974 bits (2517), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1043 (35%), Positives = 574/1043 (55%), Gaps = 55/1043 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++     D+ PA+A+TD +NL +A++F +     GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRIPDLVKAAINDEMPALALTDLSNLHAAVKFYEACLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  +                         LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   LGSVI---------------RLNDAEHRATLLAMSNTGWRNLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + +I+L  G    + +    ++ Q AE  L  + + FG+R+Y+ L R  
Sbjct: 108  VQKEWVLEQSEDLIILL--GQHSDVGKMLCSSNPQKAEPLLEAWIEKFGNRVYLALTRTE 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
            R  +     + V+LA  +++ +VA N+  F+ ++D+ AH+  + +A   V+    RP   
Sbjct: 166  RAGEEDFIQEAVKLAAKYQIGVVAHNDIHFIEKDDFYAHEARVCIADGYVLGDDKRPKNY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ Y K   +M  +FSD+P A+ENT  +A+RC+  LQ+    LP F   +        +
Sbjct: 226  SPEQYFKTGQQMSELFSDIPSAIENTYYVAQRCNVALQLGTYFLPDFPIPDG----YTID 281

Query: 309  NELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE RL       +         + Y +R+ +E+++I +M F GYFLIV D
Sbjct: 282  TYFEHLSRQGLEERLNHLYPISERDEDWEDIRKPYDERIKYEVDIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG + V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIEYVAQNYGRQAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            P       AI  + + ++         +     + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLATAIDMEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +R     
Sbjct: 522  KITDYSAVLCDPDGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIKSET 581

Query: 598  ---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               ++ +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLEIANVPLDDKDAYLVFAEANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  + +R +G E    +HPL++ +L+ T G+++YQEQVMQ AQ  +GY+L  AD+LR
Sbjct: 642  MDLIPDFIHRMHGGE-FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ FI GA++  I +  A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFIKGAAEKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TAW+K HYP EF+AA ++ EM N + I     D R   ++++PPSVN     F   D R
Sbjct: 761  HTAWLKAHYPSEFMAAVLSSEMQNTDSIVFLIDDCRNNKLEVLPPSVNMSLYHFHASDER 820

Query: 835  IY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               Y L AIKGVG    + ++++   + P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEQAMQSVIDSRIKEGPYKDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR     ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERSSLMTQLPEAVQAAEQARSNRETGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK----QQKK 1008
            + E+  LG Y +GHP+DVY+  L+        E   T RG     A +VV       +  
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNELTPTRRGVTTVFAGLVVDIANFPNRIM 998

Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031
                     +T  +     E + 
Sbjct: 999  ---------ITLDDGTARVEISC 1012


>gi|15835446|ref|NP_297205.1| DNA polymerase III subunit alpha [Chlamydia muridarum Nigg]
 gi|270285627|ref|ZP_06195021.1| DNA polymerase III subunit alpha [Chlamydia muridarum Nigg]
 gi|301337023|ref|ZP_07225225.1| DNA polymerase III subunit alpha [Chlamydia muridarum MopnTet14]
 gi|14194688|sp|Q9PJJ7|DPO3A_CHLMU RecName: Full=DNA polymerase III subunit alpha
 gi|7190859|gb|AAF39632.1| DNA polymerase III, alpha subunit [Chlamydia muridarum Nigg]
          Length = 1237

 Score =  974 bits (2517), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1079 (35%), Positives = 585/1079 (54%), Gaps = 66/1079 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+   + K      PA+A+TD  NLF A++F +      I+P
Sbjct: 2    TWIPLHCHSQYSILDATCSIKKFVAKAVEYHIPALALTDHGNLFGAVDFYKTCKQNAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +          + K+       ++LL    EGY+ L  L S  Y         
Sbjct: 62   IIGCELYVAPSSRFDKKKERKSQVAN--HLILLCKDEEGYRNLCLLSSLAYTEG-FYYFP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L++  ++GLI L+   SG I +A    S +  EK LL ++ LF +  +  +Q H
Sbjct: 119  RIDRELLKQ-HSKGLICLSACLSGSIAQAALE-SEEALEKDLLWYQDLFQEDFFSEVQLH 176

Query: 190  RGYDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +  +                         +  V+ ++    +  VATN+  +L  +D+ A
Sbjct: 177  KSSEEKIALFEEEWLRQNYYQFIEKQLKVKDAVLTVSKRLGISSVATNDIHYLDPDDWLA 236

Query: 228  HDVLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+          A  ++ V + K +   + + Y K+  EM  +F+D PE + NT+ +
Sbjct: 237  HEILLNVQSREPIRTAKQNTYVPNPKRKTYPSREFYFKSPQEMAELFADHPETISNTLIV 296

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---G 326
            A RC+  L       P ++ ++        E E        L      GL+ +      G
Sbjct: 297  ADRCNLELDFVTKHYPIYVPEDLQKKGSYSEEERYNASSAFLEQLCEQGLKTKYTPELLG 356

Query: 327  AIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
             IA+ +  +D     ++RL  E  +I       Y LIV D I WAK + IPVGPGRGSGA
Sbjct: 357  HIAQKFPEKDPLTVVKERLSLESTIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGA 416

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R++VI Y   ++G E 
Sbjct: 417  GSVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMIGREKVINYAIERHGKEN 476

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            VAQIITFG+++AK A++DVGR L  P S+V+ + K IP+  A   S  A+  D   R+  
Sbjct: 477  VAQIITFGTMKAKMAIKDVGRTLDTPLSKVNLIAKKIPDLNATIAS--ALESDPDLRQLY 534

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
            + D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK 
Sbjct: 535  IDDAEAAEIIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKP 594

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            +E  G++K DFLGLKTLT +  +   +  + G+ +  + +P +D  T+ LL    T+GIF
Sbjct: 595  VESVGMLKVDFLGLKTLTSIHVATKAIYKKTGILLQAATLPLNDRNTFSLLHQGKTMGIF 654

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            Q+ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P+
Sbjct: 655  QMESRGMQELAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPI 714

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S AS NGI
Sbjct: 715  LKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRASANGI 774

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
              +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK
Sbjct: 775  DPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEK 834

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK 860
            + K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    + 
Sbjct: 835  VGKLIQEAHSMNIPVLPPDINESGQDFEATQEGIRFSLGAVKGVGVSIVDSIVEEREKNG 894

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            P+ SL+DF  R D KK+ ++ LESLV AG+ +CF  ++   +  L+++       +K   
Sbjct: 895  PYRSLQDFVQRSDFKKVTKKQLESLVDAGSFNCFEPNKDLAIAILNDLYDTFSREKKEAA 954

Query: 921  NKHENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                  F+    T       I+ E     +     + E+ +LG Y + HP+D  K +L  
Sbjct: 955  TGVLTFFSLNSMTKDPVKVTISPENIVRRSDKELLKREKELLGVYLTAHPMDAVKHLLPF 1014

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKT----RKGSRIGWVTFSEPAKEYEANFF 1032
            + +   ++      G+ +R   ++     K +    +K      +  S+    YE   +
Sbjct: 1015 LSVVQSKDFEGLPHGSVVRTVFLIDKVTTKISSVEHKK---FALLQVSDEEDSYELPIW 1070


>gi|308448573|ref|XP_003087689.1| hypothetical protein CRE_05365 [Caenorhabditis remanei]
 gi|308253615|gb|EFO97567.1| hypothetical protein CRE_05365 [Caenorhabditis remanei]
          Length = 1015

 Score =  974 bits (2517), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1036 (38%), Positives = 585/1036 (56%), Gaps = 47/1036 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++   A+D+ PA+AITD +NL +A++F  K+   GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRIPDLIKAAASDEMPALAITDLSNLHAAVKFYNKSLGKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  +                         LL  T +G++ L E+VSR ++  Q      
Sbjct: 63   FGSVI---------------RLNDANHKATLLAMTNKGWRGLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E  ++ +I+L G     +         + AE  L  + + FG+R+Y+ L R  
Sbjct: 108  VQKDWVLEQ-SQDIIVLLG-LHSDVGEMLCAAYPEKAEPLLEQWIEKFGNRVYLALTRTG 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
            R  +     + V+LA  + + +VA N+  F+  EDYEAH+  + +A   V+    RP   
Sbjct: 166  RPLEESFNEEAVKLAAKYNIGVVAHNDVHFVRPEDYEAHEARVCIADGYVLGDSKRPKHY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ Y K  +EM+ +F+D+P A+ENT++IA+RC+  L++    LP +   E   I     
Sbjct: 226  SPEQYFKTSAEMIKLFADIPSAIENTLQIAKRCTVSLRLGFHDLPDYPIPEGHTIH---- 281

Query: 309  NELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   + +  GLE RL                 + Y +RL +EL +I +M F GYFLIV D
Sbjct: 282  SYFEHLSEIGLEERLDFLYPVETRDEDWAEIRKPYDERLAYELGIINKMDFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFDIDF
Sbjct: 342  FIQWSKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDIDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD+VI YV   YG + V+QI TFG++ AK A+RDV R L   Y   DR+ K+IP  
Sbjct: 402  CIAGRDKVIDYVARHYGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMIPTK 461

Query: 483  PAHPVSLQAIADDSRFREARL--ADPSVD---RLLEISQKLEGLYRHASTHAAGIVIGDR 537
            P      ++I  + + ++     ++P  D    + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGLTLEESIEAEPQLKDIVTNPSNPDYDDAAEIWEMALKLEGITRNTGKHAGGVVIAPT 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GV 594
             ++    +  +      V QF+   +E AGL+KFDFLGL+ LT+++ ++  + +R     
Sbjct: 522  KITDYSAILCEADGTGRVAQFDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKRIQSDK 581

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +++S IP DD ++Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLNISNIPLDDPKSYAVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  + +R +G E    +HPL++ +L+ T G+++YQEQVMQ AQ  +GY+L  AD+LR
Sbjct: 642  MDLIPDFIHRMHGGE-FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ+  FI GA+K  I +  A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKVEEMVKQRATFIEGAAKKDIDEGTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDN 833
            QTAW+K HYP EF+AA M+ EM N + I     D R  N+ ++PPSVN     F     N
Sbjct: 761  QTAWLKAHYPSEFMAAVMSSEMQNTDNIVFLIDDCRINNLVVLPPSVNMSFYQFYASDVN 820

Query: 834  RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L AIKGVG    + ++++   D PF  L DFC RVD KK+N+R LE+L+ AGALD
Sbjct: 821  TIIYGLGAIKGVGEQAMQSVIDSREQDGPFKDLFDFCHRVDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR     ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERSSLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+  L+        E   T RG     A +VV          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRADLKSFIPNKINELTLTRRGVTTVFAGLVVDIAFFP---- 994

Query: 1013 SRIGWVTFSEPAKEYE 1028
            +R+   T  +     E
Sbjct: 995  NRMMI-TLDDGTARIE 1009


>gi|319942633|ref|ZP_08016941.1| DNA polymerase III alpha subunit [Sutterella wadsworthensis 3_1_45B]
 gi|319803812|gb|EFW00744.1| DNA polymerase III alpha subunit [Sutterella wadsworthensis 3_1_45B]
          Length = 1153

 Score =  974 bits (2517), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1039 (38%), Positives = 591/1039 (56%), Gaps = 34/1039 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            L  SP FVHL+ HS YS+ +G + ++ ++  +      A+ I+D  N+F  L F   A A
Sbjct: 18   LMPSPRFVHLRFHSEYSITDGIVRIDPMIHAVLEGGGAAVGISDLMNVFGGLRFYTHALA 77

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PI+GC        +LK+ N      P    + +L    EGY  L  L+++ +L + 
Sbjct: 78   AGLKPILGC--------DLKVINPKDLNKP--FRLGVLCMNHEGYHSLSVLLTKAFLTNN 127

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  +   W  + G+EGLI L+G + G +          +A +    FK  F  R YV
Sbjct: 128  DAARGLVDPKWFDDGGSEGLIALSGAAQGELGSLLLGKKWALAHEAAERFKAQFPGRFYV 187

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR  R  D    +++   A   +LP+VAT+   FL  ED+EAH+V  ++A    +   
Sbjct: 188  ELQRAGRPTDELATARLANFAVEEKLPVVATHPIQFLKPEDFEAHEVRCSIAEGYTLQDP 247

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R TP+ YLK+ +EM  +F+D+P A+ENTVEIA+RC+    +  P LP F   +   
Sbjct: 248  RRVKRYTPEQYLKSEAEMCELFADIPAAIENTVEIAKRCNLDGVLSKPQLPLFPTPDGMS 307

Query: 303  IQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ +   +  GL+ RL                Y +RL++EL +I  MKF GYFLI
Sbjct: 308  L----DDYIDQLSKEGLQKRLEFLYPDPKVLEERRPPYDKRLEYELGIIKGMKFPGYFLI 363

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI W+K + +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 364  VQDFINWSKTHGVPVGPGRGSGAGSLVAYSLGITDLDPLHFDLLFERFLNPERVSMPDFD 423

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFCQ  RD  I YV+  YG + V+QI TFG+L AKA +RDVGRAL +PY + D L KLI
Sbjct: 424  VDFCQYNRDRTIDYVKRTYGVDAVSQIATFGTLGAKAVVRDVGRALDVPYMKTDALAKLI 483

Query: 480  PNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   +SL  AIA+   F+EA   D     ++ +++ LEGL R+   HA G++I    
Sbjct: 484  PMQPGRNISLDDAIAEVPEFKEAIERDDEYKEIIRLAKPLEGLTRNLGMHAGGVLIAPGK 543

Query: 539  LSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV--K 595
            L+   P+Y  D R +  ++QF+ K +E  GL+KFDFLGL TL++L K+++ + +      
Sbjct: 544  LTDFCPLYNSDGRPENTISQFDKKDVENVGLVKFDFLGLTTLSILAKAVEIIDKLYPEQH 603

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             +L  IP DD  TY L     T  +FQ ES GMR  L+  +PD +ED++AL +LYRPGP+
Sbjct: 604  FELERIPVDDAATYELFQQANTAAVFQFESDGMRGLLKQARPDRLEDLVALNALYRPGPM 663

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  Y +RK G+EK+  +   ++P+LKET G+++YQEQVM++AQ++ GYSL  AD+LRR
Sbjct: 664  DLIPSYIDRKFGREKVEYLDDRMEPVLKETYGIMVYQEQVMRVAQVVGGYSLGGADLLRR 723

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM +Q+  FI GA + G+ +++A  IF+L+ KFA YGFNKSHAAAY+ ++YQ
Sbjct: 724  AMGKKNVEEMKRQRAVFIKGAGERGVKESVATEIFDLMEKFAGYGFNKSHAAAYSYVAYQ 783

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K H+   F AA++ + MD+ +K+K    DAR   +    P VN     F V    +
Sbjct: 784  TAYLKVHHTAAFFAANLCMVMDDGDKMKALIDDARANGVDFRLPDVNVSEWFFSVPTENV 843

Query: 836  Y-YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
                L AIKG+       I+ E  A+ PF+ + DF +RV+   +N R+ ES+V AGA D 
Sbjct: 844  IQLGLGAIKGINRALVEAIVSEREANGPFEDIFDFAARVE--GVNFRIFESMVRAGAFDS 901

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R +L  ++ N  +    V   ++   +++F  E+      +   +    +     E
Sbjct: 902  TDADRGKLFSNISNALQGGAAVR--QSAGQDSLFGGEETKKI--VNWVEGEQWSFRRNLE 957

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E    GF  SGH  D YK  LR +G    +E    +   N+ +  ++ S +Q   ++G 
Sbjct: 958  EEMTAFGFSLSGHFFDEYKDDLRAIGCMPLDEL--QVSKENVCVGGVISSIRQINGKRG- 1014

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             +G V   +     E   F
Sbjct: 1015 VMGVVGIDDGTHSIEFFAF 1033


>gi|121605816|ref|YP_983145.1| DNA polymerase III subunit alpha [Polaromonas naphthalenivorans CJ2]
 gi|120594785|gb|ABM38224.1| DNA polymerase III, alpha subunit [Polaromonas naphthalenivorans CJ2]
          Length = 1173

 Score =  973 bits (2516), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1045 (39%), Positives = 601/1045 (57%), Gaps = 36/1045 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   ++ I+   AADQQPA+AITD +NLF  ++F ++    G++P+
Sbjct: 5    FVHLRIHTEFSVVDGTNRIDEIVAAAAADQQPALAITDLSNLFGTVKFYKEGRKTGVKPL 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG         ++ +   GK        ++LLV  ++GY  L EL++R +  +  +    
Sbjct: 65   IGA--------DIWLEAPGKEAGAPASRLLLLVQDSQGYLNLCELITRAWTKNVVRDQAV 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L WLQE+  EGLI L+G   G + +A     S  A +  L    +F  R Y+ LQR  
Sbjct: 117  VKLQWLQEL-NEGLIALSGAQRGAVGQALVQGDSARAMECALHLSGMFPRRFYLELQRSG 175

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
               D    +  VQLA   +LP+VAT+   FL+ +DYEAH+  + ++   ++    R  + 
Sbjct: 176  HPEDERHVTAAVQLAARLKLPVVATHPVQFLTYDDYEAHEARVCISEGEILGNARRVRKF 235

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K+  +M ++F+D+P AL NTVEIA+RCS  L++  P+LP F   E +  +   E
Sbjct: 236  TREQYFKSADQMKALFADVPSALANTVEIAKRCSLTLELGKPMLPEFPTPEVNGSRMPPE 295

Query: 309  NELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +  R+ +  GLE RL         +     +Y  RL+FE+N I +M F GYFLIV DFIQ
Sbjct: 296  DYFRHTSFEGLEERLLHLYPNPAQRDAKRPEYVARLEFEINTILKMGFPGYFLIVGDFIQ 355

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 356  WAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQS 415

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV++KYGH  V+QI+TFG++ A+AA+RDVGR L  PY   D + KLIPN P  
Sbjct: 416  NRDRVIDYVKDKYGHAAVSQIVTFGTMAARAAIRDVGRVLDFPYGFCDGISKLIPNKPGQ 475

Query: 486  PVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             V+LQ              A+  +    +    +  V  LL++++KLEGL R+   HA G
Sbjct: 476  AVTLQLVPADRKKNDKMVYALEAEPVLADRESKEEDVHTLLDLARKLEGLTRNVGMHAGG 535

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I    L+   P+Y    S   V+QF+   +E  GL+KFDFLGL TLT+L+ + +F+  
Sbjct: 536  VLIAPGKLTDFCPLYLQPGSTSAVSQFDKNDVEAIGLVKFDFLGLATLTILEIAREFIIA 595

Query: 592  RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R           +P DD   Y L     T  +FQ ES GM++ L+  +PD +ED+IA+ +
Sbjct: 596  RYPAQKDFKFEDLPLDDARVYRLFADGNTEAVFQFESIGMQRMLKDARPDRLEDLIAMNA 655

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  Y  RK GKE      P + PML+ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 656  LYRPGPMDLIPTYIARKQGKEVPEYPDPRVKPMLEETYGIMVYQEQVMQTAQILGGYSLG 715

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK ++EM + +E F  GA  NG+++  A  +F+L+ KFA YGFNKSH+AA
Sbjct: 716  GADMLRRAMGKKDEKEMAQHREIFRKGAGINGLAQEKADEVFDLMEKFAGYGFNKSHSAA 775

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+++Y TAW+K H+P EF AA+MT+EMD+ +K+K    DA++  +    P +N     F
Sbjct: 776  YALLAYHTAWLKVHFPAEFFAANMTVEMDDTDKLKILFGDAQKMGLSFEVPDINQGDYRF 835

Query: 829  K-VGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886
            + +    + Y L AIKG G      I+ A  +  PF SL DFC RVD  K+N+R +E+L+
Sbjct: 836  EPITAKSVRYGLGAIKGTGQQAIAAIVAARKEGGPFTSLFDFCVRVDRSKMNKRTVEALI 895

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
              GA D    +R +LL S +    +A   + N         +      + +  L +  + 
Sbjct: 896  KGGAFDSLHLNRAELLASSERAFDFAAATQANANQGGLFDMSDSHAASTQEPELVEMPMF 955

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                R   E+  +GFY SGH  D  +  +R+   +  E+   +       LA +V   + 
Sbjct: 956  GVKARLVLEKTAIGFYLSGHLFDEVEQEVRQFAKRSIEDMSESRDSQ--LLAGIVTDLRI 1013

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANF 1031
                +G  I +    +     E + 
Sbjct: 1014 INGNRGKLIIF-KLDDKTDVLEVSV 1037


>gi|326387647|ref|ZP_08209253.1| DNA polymerase III, alpha subunit [Novosphingobium nitrogenifigens
            DSM 19370]
 gi|326207693|gb|EGD58504.1| DNA polymerase III, alpha subunit [Novosphingobium nitrogenifigens
            DSM 19370]
          Length = 1196

 Score =  973 bits (2515), Expect = 0.0,   Method: Composition-based stats.
 Identities = 448/1065 (42%), Positives = 634/1065 (59%), Gaps = 40/1065 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FV L+V SSY++L+GA+    I    A    PAIAITD N L+ ++ F++    
Sbjct: 1    MPHAP-FVSLRVFSSYTMLDGAVDPKVIAKTAAERGFPAIAITDRNGLYGSVAFAKACKD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QP+IG  L +   +    T       PT+  + L    + GY  +  LVSR +L   
Sbjct: 60   VGVQPVIGTMLAVARPERGGATTTFGPQAPTIDWLALYAQDSTGYDNICHLVSRAHLDRP 119

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             + +  + +  L    T+GL+ L+ G  G I R         AE        LF DR Y+
Sbjct: 120  LEFAPHVRVEDLA-GHTDGLLCLSAGGEGAITRLLAEGQQDAAEAYADEIAGLFPDRFYI 178

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +   E  ++ LAY  + PLVATN + F     Y AHD ++ +A ST V   
Sbjct: 179  ELARRGDPVEERAEDALIDLAYARDWPLVATNPACFAERAFYPAHDAMLCIASSTHVDSA 238

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DRPR + + ++K    M  +F D+PEAL NT+ +A+RC+ +     PILP     +  + 
Sbjct: 239  DRPRSSVEWWIKPAPVMEELFKDIPEALANTLVVAQRCAAMPPKRKPILPSLAGDKEGEA 298

Query: 304  QKEEEN-----------ELRNKAVAGLEVRLAQGAIAKGYHAQ--------------DYR 338
            +    +                    L   L  G   +   A+              +YR
Sbjct: 299  RMCAADSRTGLVARLMPYYPADTHEELSALLTMGPEGEPVEAEFPALSAAGIFGEVCNYR 358

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             RL+FE+ +I RM F GYFLIVADFI+WAK+++IPVGPGRGSGAGS+ A+ALTITD+DP+
Sbjct: 359  HRLEFEIGIINRMGFGGYFLIVADFIKWAKEHSIPVGPGRGSGAGSLVAWALTITDLDPI 418

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
            R  LLFERFLNP+R+SMPDFDIDFC+ RR EVIRYVQ KYG + VAQIITFG L+A+A L
Sbjct: 419  RLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQRKYGEDHVAQIITFGKLKARAVL 478

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQK 517
            RD GR LQM Y QVDRLCK++PN P  P  L +A+   +  +     DP V RL++++ +
Sbjct: 479  RDTGRILQMSYGQVDRLCKMVPNHPTDPWPLPRALNGVAELKREYDRDPEVRRLIDLAMQ 538

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R++STHAAG+VIGDRPL+QLVP+YRD RSD+PVTQF+MK +E AGL+KFDFLGLK
Sbjct: 539  LEGLPRNSSTHAAGVVIGDRPLAQLVPLYRDPRSDMPVTQFDMKHVEDAGLVKFDFLGLK 598

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            TL++L+K++D L +RG+++DLS + +DD + Y LL +  T+G+FQLES GMR+ L  ++P
Sbjct: 599  TLSVLRKAVDLLGKRGIQIDLSTLGWDDAQVYRLLQSGDTVGVFQLESEGMRRTLAAVKP 658

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
                DIIALVSLYRPGP+DNI ++  RKNG E+I   H  +  +L ET G+ +YQEQVMQ
Sbjct: 659  TNFGDIIALVSLYRPGPMDNIPLFGRRKNGLEEIEYPHDKLAGILSETYGIFVYQEQVMQ 718

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKF 756
             AQ+L+GYSL +AD+LRRAMGKKI+ EMD+Q+ RF++G  + + I    A  +F+L+ KF
Sbjct: 719  AAQILAGYSLGDADLLRRAMGKKIQAEMDQQRARFVAGCKEVSQIDAGKANELFDLIDKF 778

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A YGFNKSHAAAYA+++YQTAW+KTHYP EF AA+M  +M   EK+  F  D R+    +
Sbjct: 779  AGYGFNKSHAAAYALLAYQTAWLKTHYPHEFYAAAMCFDMHQSEKLNIFVDDMRRNGFAL 838

Query: 817  MPPSVNTPCVDFKVGD----NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSR 871
              P +N    +F V        + Y+LA ++ VG      I+ E  A+ PF +L++   R
Sbjct: 839  AGPDINRSVAEFTVERTEESYAVRYALAGLRNVGEKAMEAIVAEREANGPFQTLDELFRR 898

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            + +  +NRR LE+L   GALDC   +R +L+ + + +   A    + RT+    +F  + 
Sbjct: 899  LPAGAMNRRQLEALAAGGALDCLEPNRAKLIANAELLMAVADEASRARTSGQGGLFGGDD 958

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---- 987
                    L +    + + +   E+   GFYF+ HP++ Y+ I    G + Y   +    
Sbjct: 959  HV-EQATRLVETKPWSRAEQMAAERENFGFYFAAHPVEEYRAISSANGARTYASLMMGGG 1017

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +AA+V   Q++KT++G       FS+ +  + A  F
Sbjct: 1018 TATGRTGAVMAALVEGVQKRKTKRGKDFVMADFSDKSGLFSACCF 1062


>gi|257465914|ref|ZP_05630225.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
            25563]
 gi|315917070|ref|ZP_07913310.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
            25563]
 gi|313690945|gb|EFS27780.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
            25563]
          Length = 1144

 Score =  973 bits (2515), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1033 (36%), Positives = 598/1033 (57%), Gaps = 31/1033 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL+G   + + + +  + +  AIAITD  N+F ALEF QKA   G++P
Sbjct: 3    DFVHLHLHTEYSLLDGVGKIEDYMKRAKSLRMKAIAITDHGNMFGALEFYQKAQKYGLKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ +      +   +          ++LL    EGYQ L++L S  YL        
Sbjct: 63   IIGVEIYLSEYPLAEKKGRN-------FHLILLAENYEGYQNLMKLSSLAYLEG-FYYKP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ-VAEKRLLTFKKLF-GDRLYVNLQ 187
            R+    L++  ++G+I L+   +G I       + +   E  +L ++ +F  +  Y+ +Q
Sbjct: 115  RLDKELLKKY-SKGIIALSACMNGEIASYILEGAEESKIEATILEYQDIFGKENFYLEVQ 173

Query: 188  RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++      +       ++PLVATN++ ++++ ++   DV++ +   + +S + R 
Sbjct: 174  AHEEIEQQQVNEALYAFGKKMKIPLVATNDTHYVNKGEHILQDVIICIQTGSHLSDEKRM 233

Query: 247  RVT-PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R+   D YLK+  EM ++      EAL+N+VEIA+RC   + +H    P +   E     
Sbjct: 234  RIEMQDLYLKSYEEMYAVLGEQYQEALQNSVEIAKRCQLWIPMHEFQFPDYNLPEG---I 290

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               E  L+     GL  R  QG   +        +R+++EL++I +M ++GYF++V DFI
Sbjct: 291  SSLEEYLKKLTYEGLGKRYPQGLDER------IVERVEYELSIINKMGYAGYFVVVWDFI 344

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+   IP+GPGRGS AGS+ AYAL IT +DPL + L+FERFLNP+R+SMPD DID CQ
Sbjct: 345  SFARSRKIPIGPGRGSAAGSLVAYALEITQLDPLEYRLIFERFLNPERISMPDIDIDICQ 404

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR E+I YV  KYG ++VAQI TFG+L+A+AA+RDVGR + +  S++D+  K IP   +
Sbjct: 405  ERRQEIIDYVVQKYGQDKVAQIATFGTLKARAAIRDVGRVMDVELSKIDKAAKCIPMFAS 464

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 + + ++   +     D  +  ++  + ++E   RH STHAAG++I  + L++ VP
Sbjct: 465  LR---EVLEENIELKTMYQQDVELKNVINTAMRIENKVRHISTHAAGVLITKKSLTESVP 521

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +Y D ++ +  TQ+ MK +E+ GL+K DFLGL+TLT+LQ++ D++ +    K++LS IP 
Sbjct: 522  LYADSKNGIVSTQYQMKELEELGLLKIDFLGLRTLTILQRTQDYIEENTGKKIELSEIPL 581

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
             D   Y +L+   + G+FQ+ES G+R  L+ +QP+   DI+AL+SLYRPGP+ + +V  +
Sbjct: 582  QDKTVYEMLSKGDSFGVFQMESRGLRSILKRLQPNSFGDIVALLSLYRPGPLGSGMVDDF 641

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             +RK+GK+ I   HP ++ +LKET GVI+YQEQVM+IA +++ YSL EAD+LRRAMGKK 
Sbjct: 642  IDRKHGKKAIEYPHPSLEEVLKETYGVILYQEQVMKIANIMADYSLGEADLLRRAMGKKN 701

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E M + + +FI  + K G S+  A  IF+L+ KFA YGFNKSH+AAYA+I+Y TA+ K 
Sbjct: 702  VEIMHENRSKFIERSIKKGYSREKAEEIFDLIDKFAGYGFNKSHSAAYALIAYWTAYCKV 761

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP  F AA ++ E+ +++KI  +  DA+   ++I  P V  P   F V  ++I ++L+A
Sbjct: 762  HYPKYFYAALLSSEISDIDKISFYFADAKAHGVEIETPDVQFPSSRFVVKGDKILFALSA 821

Query: 842  IKGVGTT-TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK VGT  + +   E      F S EDF  R+  + LN++ LE+ ++AGALD    +R +
Sbjct: 822  IKNVGTGISEKIKEEREKKGEFRSYEDFVERMKKEGLNKKGLEAFIYAGALDSLSGNRHE 881

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             ++SLD +  Y Q   K    +  N+F   K     + +L +       V  E E+  LG
Sbjct: 882  KIESLDKVLDYVQRKAKADDIQQMNLFGDSKKNL-VQFSLSRIEEYPMEVLLEKEKEFLG 940

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +PLD Y+ + +      +           + L  ++ + ++ +T+KG  + +   
Sbjct: 941  FYVSANPLDRYESLYQSFDFDEFNIIKEENMEREVWLYGIIQNLKKTRTKKGDAMAFADL 1000

Query: 1021 SEPAKEYEANFFP 1033
                 +     FP
Sbjct: 1001 ENYQGQIPMVIFP 1013


>gi|269959021|ref|YP_003328810.1| DNA polymerase III alpha subunit [Anaplasma centrale str. Israel]
 gi|269848852|gb|ACZ49496.1| DNA polymerase III alpha subunit [Anaplasma centrale str. Israel]
          Length = 1127

 Score =  973 bits (2515), Expect = 0.0,   Method: Composition-based stats.
 Identities = 466/1024 (45%), Positives = 660/1024 (64%), Gaps = 31/1024 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLLEG + +++++        PA+A+TD+ NLF +LEFS  A + G+QPI
Sbjct: 6    FVHLRTHSDYSLLEGMIKIDSLVAMCVDQNMPAVALTDSGNLFGSLEFSDCAASFGVQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC + +                  + +I++L  + EG+  LI LVS  +  +Q  ++ R
Sbjct: 66   VGCNIMVH------------DAGEDLGNILMLTKSREGFANLISLVSNGFRENQSGKANR 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + +S L   G+   ++LTGG    + RA    S+ +    +    + FG  +YV LQRH 
Sbjct: 114  VNVSDLLRQGSGL-LLLTGGHDDILARALLRKSAGLG--AINAVLEAFGSDVYVELQRHG 170

Query: 191  GYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +   E  ++  AY   +PLVATN+  F   +D++AHDVL  ++  T + Q+ R R+T
Sbjct: 171  LESQKEVEGLLISFAYERNVPLVATNDVFFARRDDFQAHDVLSCISDGTYIVQEGRRRLT 230

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +HY K   EM  +F+D+PEA+ NT  IARRCSFI ++  P LP F   +     + E  
Sbjct: 231  EEHYFKTSKEMFELFADIPEAVRNTPMIARRCSFIAEIRKPSLPHFPCSDG----RTEAE 286

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL   A  GLE RL    I +   A+ Y  RL +EL V+  M +SGYFLIVADFI W+KK
Sbjct: 287  ELTECAKTGLEARLRTKNIDEDRRAK-YHDRLQYELGVVISMDYSGYFLIVADFICWSKK 345

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNP+R+SMPDFDIDFCQ++RD 
Sbjct: 346  NDIMVGPGRGSGAGSLIAWSLGITDLDPIEFGLIFERFLNPERVSMPDFDIDFCQEKRDR 405

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI YV+ KYG   VA IITFG LQA+A LRDVGR +Q+PY+Q+D++CK+IP DP  PV+L
Sbjct: 406  VIEYVREKYG--YVAHIITFGKLQARAVLRDVGRVMQIPYAQIDKICKMIPLDPVSPVTL 463

Query: 490  -QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +AI  D   +  + +D +V +LLEIS KLEGLYRHAS HAAGIVI D+PL   VP+Y D
Sbjct: 464  SEAIEMDQNLKREQESDHTVAKLLEISLKLEGLYRHASVHAAGIVICDKPLEDFVPLYYD 523

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
                LP+TQ+NMK++EKAGL+KFDFLGL+TLT+L +    +  RG+ ++LS +P DD +T
Sbjct: 524  QSCSLPITQYNMKYVEKAGLVKFDFLGLRTLTVLDQVRSLIQDRGISIELSELPLDDSKT 583

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y +L+T  ++G+FQLES+GMR+A+  ++PD I+DIIAL+SLYRPGP++NI +Y  RK+G 
Sbjct: 584  YEMLSTGNSVGVFQLESAGMREAISKLRPDGIQDIIALISLYRPGPMNNIAIYIARKHGL 643

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E    IHP+++ +LKET GVIIYQEQVM+IA++L+GYSL  AD+LRRAMGKKIKEEMDKQ
Sbjct: 644  ESPDYIHPMLEGVLKETFGVIIYQEQVMEIARILAGYSLGSADLLRRAMGKKIKEEMDKQ 703

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ F++GA KNGI +  A  IF+L+AKFA YGFNKSHAAAYA+IS+QTA++K +Y  EF 
Sbjct: 704  RQNFVNGAVKNGIDRGKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYLKANYTKEFF 763

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             ASM L++ + +K++  CQ A+   ++++PP VN+  V F +  + I Y L A+K VG T
Sbjct: 764  TASMNLDIGDKDKLELLCQQAKACGVRVLPPDVNSSGVLFTISGDAIKYGLGALKNVGQT 823

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             AR ++   A K +  + DF   + +K   +RV+ESL+ +GALD    +R QL +SL  I
Sbjct: 824  AAREVVPE-AGKQYSDIWDFARNMRAKWACKRVMESLIKSGALDSIHPNRRQLFESLGTI 882

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                     +  +K  N+F   +G       L +    +   +  +E   LGFY   HPL
Sbjct: 883  LDVIDDTRNSAESKQFNLFGITEG-----HKLLEVEDWSEEEKIAHEFSTLGFYLRYHPL 937

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
              Y+ +LR +GI+   E   ++     + A  + S  + ++    R   V  S+P    +
Sbjct: 938  AKYEGVLRGLGIRFVSECQNSVESGIKKSAGTISSV-RIRSANKERFAVVRISDPYGVND 996

Query: 1029 ANFF 1032
              F+
Sbjct: 997  VAFY 1000


>gi|228999385|ref|ZP_04158964.1| DNA polymerase III subunit alpha [Bacillus mycoides Rock3-17]
 gi|228760330|gb|EEM09297.1| DNA polymerase III subunit alpha [Bacillus mycoides Rock3-17]
          Length = 1096

 Score =  973 bits (2515), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1015 (35%), Positives = 581/1015 (57%), Gaps = 46/1015 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L+ A  ++ ++ +       +++ITD N ++  + F +     G++PIIG    +  ++
Sbjct: 1    MLKSACKIDELVSRAKELGFSSLSITDENVMYGVIPFYKACKKNGVRPIIGLTASVFSEE 60

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                             +VLL     GYQ L+++ S +      K    I   WL     
Sbjct: 61   E-----------EQSYPLVLLAENEMGYQNLLKISSTIMT----KSKDGIPKKWLSHYA- 104

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQV 200
            +GLI ++ G  G I++       ++AE+    ++ +F    Y++LQ H   D  + + ++
Sbjct: 105  KGLIAISPGKDGEIEQLLLQGRDEIAEEVARAYQNMF-GSFYMSLQHHAIQDELFLQEKL 163

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY-LKNRSE 259
             Q A    +P+VATN+  ++++ D    + L++V   T ++  DRPR+  D Y LK+ +E
Sbjct: 164  PQFANEINIPVVATNDVRYVNQSDALVQECLLSVQSGTKMTDPDRPRLKTDQYYLKSSAE 223

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M ++FS   EAL+NTV IA RC   +  H   LP+F     +      +  LR     GL
Sbjct: 224  MEALFSHAEEALQNTVCIAERCHVEIPFHVNQLPKFPVPSNE----TSDAYLRRICEDGL 279

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
              R        G     +R+RL+ EL VI+RM FS YFLIV DF+++  ++ I  GPGRG
Sbjct: 280  NKRY-------GAVQDVHRKRLNHELEVISRMGFSDYFLIVWDFMKYGHEHGILTGPGRG 332

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            S AGS+ +Y L ITDIDP+ ++LLFERFLNP+R+++PD DIDF   RRDE+IRYV++KYG
Sbjct: 333  SAAGSLVSYVLEITDIDPIEYNLLFERFLNPERVTLPDIDIDFPDIRRDEMIRYVKDKYG 392

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
              RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +  +A  +    R
Sbjct: 393  QLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSRVGITLK-EAYEESGSLR 451

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
            E    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  +D+ VTQ+ 
Sbjct: 452  EFVQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGHNDVYVTQYP 510

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
             + +E+ GL+K DFLGL+ LTLL+  L F+  + G ++D+  +P  D +T+ LL    T 
Sbjct: 511  AEVLEELGLLKMDFLGLRNLTLLENILTFIVNKTGKQIDIRNLPLQDEKTFQLLGRGDTT 570

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G+FQLES GMR  L  ++P+  EDI+A+ +LYRPGP++ I  +   K+GK +I  +H  +
Sbjct: 571  GVFQLESGGMRNVLRSLKPNEFEDIVAVNALYRPGPMEQIPTFIESKHGKCQIHYLHSDL 630

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
             P+LK T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK +E +D++++ F+ G  +
Sbjct: 631  KPILKSTYGVIVYQEQIMQIASQLAGFSLGEADLLRRAVSKKNREILDQERKHFVQGCLR 690

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP+EF+ A ++  + N
Sbjct: 691  NGYDETSAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYPLEFMTALLSSAIGN 750

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
             +KI ++ ++ ++    ++PPS++    +F++  N I YSL +I+ +G  T   ++E   
Sbjct: 751  EDKIVQYIRETKRKGFHVLPPSLHRSSYNFQIEGNAIRYSLLSIRNIGMATVNAVIEERE 810

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
              PF  L +FC R+ +K +  R LE+ V+AG  D F  SR  L  S+    +YA    + 
Sbjct: 811  RNPFQDLFEFCLRMPAKFVTERNLEAFVWAGCFDDFQVSRTTLFNSIKGALEYASLARE- 869

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                       E    S  +  E+ S      +  NE+  LGFY S +P   Y  +++++
Sbjct: 870  --------LGEESVPKSVYVQGEELSF---IEQLNNEKEALGFYLSSYPTAQYAKLVKEL 918

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             I    +++   R    R    V   +  +T+K  ++ +VTF +   E EA  FP
Sbjct: 919  EIPSLAQAMRQKRNVQ-RAIVYVTGVKVIRTKKLQKMAFVTFCDQNDEMEAVVFP 972


>gi|300741276|ref|ZP_07071297.1| DNA polymerase III, alpha subunit [Rothia dentocariosa M567]
 gi|300380461|gb|EFJ77023.1| DNA polymerase III, alpha subunit [Rothia dentocariosa M567]
          Length = 1180

 Score =  973 bits (2515), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1064 (34%), Positives = 556/1064 (52%), Gaps = 53/1064 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL VH+ YS+L+GA  L ++          ++A +D   LF A +F ++A A  I+P
Sbjct: 5    GFAHLHVHTEYSMLDGAARLGDLFQYARELGMDSMATSDHGFLFGAFDFWRQAKANDIKP 64

Query: 70   IIGCQLDIDM------QDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            IIG +  +        +  ++  +  +           + +   T EG   L    S   
Sbjct: 65   IIGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYTHMTMWAETTEGMHNLFRASSVAS 124

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-G 179
            L  Q     R+    LQ   ++GLI  TG  SG I         Q A      F+ +F  
Sbjct: 125  LEGQLY-KPRMDREVLQTY-SKGLIATTGCPSGEIQTRLRLGQYQEAVAAAAEFRDIFGK 182

Query: 180  DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            D  Y  +  H    +R  ++ + +LA    LP VATN+  +  +ED+ AH  L+ V   +
Sbjct: 183  DNFYCEVMDHGLDIERNVQADLHRLAKELNLPFVATNDLHYTRQEDHTAHAALLCVQSGS 242

Query: 239  VVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             ++   R +   D+ YL++  EM  IF D+P A ENT+EIA RC+      A  +P F  
Sbjct: 243  TLTDPKRFKFDADNFYLRSPEEMYQIFGDVPGACENTLEIAERCNVEFNTKANYMPNFPV 302

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E ++    EE+    +   GL  R   G   K       R++ ++E+ VI  M F GYF
Sbjct: 303  PEGEN----EESWFVKEVERGLHYRFPNGVPDK------VREQAEYEVGVITSMGFPGYF 352

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD++PL   L+FERFLNPDR+SMPD
Sbjct: 353  LVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLNPLNHDLIFERFLNPDRVSMPD 412

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DF   RR EVI YV  KYG ++VAQI+TFG+++AK AL+D  R +  PYS  +RL K
Sbjct: 413  FDVDFDDRRRAEVIDYVTEKYGEDKVAQIVTFGTIKAKQALKDASRVMDQPYSVGERLTK 472

Query: 478  LIPND-PAHPVSLQAIA--DDSRFREARL--------ADPSVDRLLEISQKLEGLYRHAS 526
             +P D     ++L  +   +D R+ EA           D     + E ++ LEGL R   
Sbjct: 473  AMPPDVMGKNIALANVYNPEDKRYSEAGDLRALIEDPVDKIYGEVFETAKGLEGLKRQWG 532

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HAAG+++  + L+ ++P+ R       +TQF+    E  GLIK DFLGL+ LT++  +L
Sbjct: 533  VHAAGVIMSSKNLTDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTIISDAL 592

Query: 587  DFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            D +   RG+++DL  +  DD E+Y LL    TLG+FQL+   MR  L+ M+P+  E I A
Sbjct: 593  DNVKMNRGIEIDLENLEVDDKESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEFEHISA 652

Query: 646  LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVMQIA 699
            +++LYRPGP+  ++   Y  RKNGK++I  IHP ++     +L  T G+I+YQEQVM IA
Sbjct: 653  VLALYRPGPMGANSHTNYALRKNGKQEIQPIHPELEEPLAEILDTTYGLIVYQEQVMAIA 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q ++ Y+L EAD+LRRAMGKK K E+DKQ E F  G   NG S+     ++++L  F+DY
Sbjct: 713  QKVANYTLGEADLLRRAMGKKKKAELDKQYEAFHDGMISNGYSEGAVKALWDILLPFSDY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNK+H AAY ++SY TA++K HYP E++AA +T   DN +K+  +  + R   I ++PP
Sbjct: 773  AFNKAHTAAYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGITVLPP 832

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLN 878
             VN   + F      I + + AI+ VG      ++ A  +   F+S  DF  +V     N
Sbjct: 833  DVNESTLTFAPVGKDIRFGMGAIRNVGANVVDGMIAAREEKGHFESFNDFLKKVPLVVCN 892

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSD 936
            +R +ESL+ AGA D   ++R  L    ++    A  V++       ++F          D
Sbjct: 893  KRTIESLIKAGAFDELKHTRRSLSLVHESAVDAAVSVKRKEAAGQFDLFGSLGMDDALGD 952

Query: 937  K--ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT----I 990
               +T+          +   E+ +LG Y S HPL   +  L         + +       
Sbjct: 953  DLSVTVPDIPDWERREKLNFEREMLGLYVSDHPLRGLERALSDAATASVHDIIDEDSHIR 1012

Query: 991  RGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAK-EYEANFF 1032
             G  + +A M+ S  ++  +  G++   V   + +       FF
Sbjct: 1013 DGEVVTIAGMLTSVSRRIAKSSGNQYASVELEDSSGATLTVMFF 1056


>gi|239978950|ref|ZP_04701474.1| DNA polymerase III subunit alpha [Streptomyces albus J1074]
 gi|291450830|ref|ZP_06590220.1| DNA polymerase III subunit alpha [Streptomyces albus J1074]
 gi|291353779|gb|EFE80681.1| DNA polymerase III subunit alpha [Streptomyces albus J1074]
          Length = 1182

 Score =  972 bits (2514), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/1069 (31%), Positives = 540/1069 (50%), Gaps = 52/1069 (4%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
               P F HL VH+ YSLL+GA  L ++ D         IA++D  NL  A +F   A  A
Sbjct: 4    TSKPPFTHLHVHTQYSLLDGAARLKDMFDACNEMGMTHIAMSDHGNLHGAYDFFHSAEKA 63

Query: 66   GIQPIIGCQLDIDMQDN----------LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            G+ PIIG +  +  +                    +         +  + + G   L  L
Sbjct: 64   GVTPIIGIEAYVAPESRRTKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFRL 123

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S  Y     ++  R+    + +  +EGLI  TG  SG +         + A +    ++
Sbjct: 124  SSDAYSEGWLQKWPRMDKESISQW-SEGLIASTGCPSGEVQTRLRLGQEEEALRAAAEYQ 182

Query: 176  KLF-GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++F  DR ++ L  H    +R     ++ +     +P + TN+S +    +  AHD L+ 
Sbjct: 183  EIFGKDRYFLELMDHGIEIERRVRQGLLDIGKKLGIPPLVTNDSHYTYSHESVAHDALLC 242

Query: 234  VAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHA- 289
            +     +S  DR R     +YLK+  EM +I S     E   NT+ +A +          
Sbjct: 243  IQTGKNLSDPDRFRFDGTGYYLKSTEEMYAIDSSDAWQEGCRNTLLVAEQIDTTGMFEKR 302

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
             ++P+F   +       E    + +   G+  R   G        +D +++ ++E++VI 
Sbjct: 303  DLMPKFDIPDGF----TEVTWFQEEVRRGMARRFPAGV------PEDRQRQAEYEMDVII 352

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLN
Sbjct: 353  QMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLN 412

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY
Sbjct: 413  PERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPY 472

Query: 470  SQVDRLCKLIPND-PAHPVSLQAIA--------DDSRFREARLADPSVDRLLEISQKLEG 520
            +  DRL K +P D     + L  I         +    R     +P V ++++ ++ +EG
Sbjct: 473  AMGDRLTKAMPADVLGKGIDLDGITNPKHPRYSEAGEIRGMYENEPDVKKVIDTAKGVEG 532

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ LT
Sbjct: 533  LVRQMGVHAAGVIMSSEPIVDHAPLWTRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLT 592

Query: 581  LLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  +   + A +G+ +DL  +P DD +T+ LL    TLG+FQ +   MR  L  M+PD 
Sbjct: 593  IMDDARKMVEANKGIDLDLLALPLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRLMKPDN 652

Query: 640  IEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLID----PMLKETQGVIIYQE 693
             EDI A+ +LYRPGP+       Y  RKNG+++I  IHP ++     +L  T G+I+YQE
Sbjct: 653  FEDISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEILGLTYGLIVYQE 712

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QV + AQ+++GYSL EAD+LRR MGKK  EE+ K    F  GA K G S      ++++L
Sbjct: 713  QVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVLFQEGAKKKGFSDEAIQALWDVL 772

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+  
Sbjct: 773  VPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMK 832

Query: 814  IQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871
            I+++PP VN    +F    +  I + L A++ VGT     I+ A  A   F S  D+  +
Sbjct: 833  IKVLPPDVNESVHNFAAQSDDVILFGLEAVRNVGTNVVESIIRARKAKGKFSSFPDYLDK 892

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            ++++  N+R  ESL+ AGA D  G++R  L    + +      V++       ++F    
Sbjct: 893  IEAQACNKRTTESLIKAGAFDALGHTRKGLTAHYEPMIDNVVAVKRKEAEGQFDLFGGMG 952

Query: 932  GTFSDKITLEK-----FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
               +D+              + +     E+ +LG Y S HPL   + +L      G  + 
Sbjct: 953  DDNADEPGFGLDIEFTDEEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIGQL 1012

Query: 987  VATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1013 TGGDFGDGAVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1061


>gi|311113352|ref|YP_003984574.1| DNA-directed DNA polymerase III subunit alpha [Rothia dentocariosa
            ATCC 17931]
 gi|310944846|gb|ADP41140.1| DNA-directed DNA polymerase III alpha subunit [Rothia dentocariosa
            ATCC 17931]
          Length = 1180

 Score =  972 bits (2513), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1064 (34%), Positives = 556/1064 (52%), Gaps = 53/1064 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL VH+ YS+L+GA  L ++          ++A +D   LF A +F ++A A  I+P
Sbjct: 5    GFAHLHVHTEYSMLDGAARLGDLFQYARELGMDSMATSDHGFLFGAFDFWRQAKANDIKP 64

Query: 70   IIGCQLDIDM------QDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            IIG +  +        +  ++  +  +           + +   T EG   L    S   
Sbjct: 65   IIGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYTHMTMWAETTEGMHNLFRASSVAS 124

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-G 179
            L  Q     R+    LQ   ++GLI  TG  SG I         Q A      F+ +F  
Sbjct: 125  LEGQLY-KPRMDREVLQTY-SKGLIATTGCPSGEIQTRLRLGQYQEAVAAAAEFRDIFGK 182

Query: 180  DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            D  Y  +  H    +R  ++ + +LA    LP VATN+  +  +ED+ AH  L+ V   +
Sbjct: 183  DNFYCEVMDHGLDIERNVQADLHRLAKELNLPFVATNDLHYTRQEDHTAHAALLCVQSGS 242

Query: 239  VVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             ++   R +   D+ YL++  EM  IF D+P A ENT+EIA RC+      A  +P F  
Sbjct: 243  TLTDPKRFKFDADNFYLRSPEEMYQIFGDVPGACENTLEIAERCNVEFNTKANYMPNFPV 302

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E ++    EE+    +   GL  R   G   K       R++ ++E+ VI  M F GYF
Sbjct: 303  PEGEN----EESWFVKEVERGLHYRFPNGVPDK------VREQAEYEVGVITSMGFPGYF 352

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD++PL   L+FERFLNPDR+SMPD
Sbjct: 353  LVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLNPLNHDLIFERFLNPDRVSMPD 412

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DF   RR EVI YV  KYG ++VAQI+TFG+++AK AL+D  R +  PYS  +RL K
Sbjct: 413  FDVDFDDRRRAEVIDYVTEKYGEDKVAQIVTFGTIKAKQALKDASRVMDQPYSVGERLTK 472

Query: 478  LIPND-PAHPVSLQAIA--DDSRFREARL--------ADPSVDRLLEISQKLEGLYRHAS 526
             +P D     ++L  +   +D R+ EA           D     + E ++ LEGL R   
Sbjct: 473  AMPPDVMGKNIALANVYNPEDKRYSEAGDLRALIEDPVDKIYGEVFETAKGLEGLKRQWG 532

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HAAG+++  + L+ ++P+ R       +TQF+    E  GLIK DFLGL+ LT++  +L
Sbjct: 533  VHAAGVIMSSKNLTDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTIISDAL 592

Query: 587  DFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            D +   RG+++DL  +  DD E+Y LL    TLG+FQL+   MR  L+ M+P+  E I A
Sbjct: 593  DNVKMNRGIEIDLENLEVDDKESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEFEHISA 652

Query: 646  LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVMQIA 699
            +++LYRPGP+  ++   Y  RKNGK++I  IHP ++     +L  T G+I+YQEQVM IA
Sbjct: 653  VLALYRPGPMGANSHTNYALRKNGKQEIQPIHPELEEPLAEILDTTYGLIVYQEQVMAIA 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q ++ Y+L EAD+LRRAMGKK K E+DKQ E F  G   NG S+     ++++L  F+DY
Sbjct: 713  QKVANYTLGEADLLRRAMGKKKKAELDKQYEAFHDGMISNGYSEGAVKALWDILLPFSDY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNK+H AAY ++SY TA++K HYP E++AA +T   DN +K+  +  + R   I ++PP
Sbjct: 773  AFNKAHTAAYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGITVLPP 832

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLN 878
             VN   + F      I + + AI+ VG      ++ A  +   F+S  DF  +V     N
Sbjct: 833  DVNESTLTFAPVGKDIRFGMGAIRNVGANVVDGMIAAREEKGHFESFNDFLKKVPLVVCN 892

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSD 936
            +R +ESL+ AGA D   ++R  L    ++    A  V++       ++F          D
Sbjct: 893  KRTIESLIKAGAFDELKHTRRSLSLVHESAVDAAVSVKRKEAAGQFDLFGSLGMDDALGD 952

Query: 937  K--ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT----I 990
               +T+          +   E+ +LG Y S HPL   +  L         + +       
Sbjct: 953  DLSVTVPDIPDWERREKLNFEREMLGLYVSDHPLRGLERALSDAATASVHDIIDEDSHIR 1012

Query: 991  RGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAK-EYEANFF 1032
             G  + +A M+ S  ++  +  G++   V   + +       FF
Sbjct: 1013 DGEVVTIAGMLTSVSRRIAKSSGNQYASVELEDSSGATLTVMFF 1056


>gi|328675636|gb|AEB28311.1| DNA polymerase III alpha subunit [Francisella cf. novicida 3523]
          Length = 1159

 Score =  972 bits (2513), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1041 (37%), Positives = 596/1041 (57%), Gaps = 41/1041 (3%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ +S+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGFSVVDSTVRLTDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
             +L +D +               V  +VLL    +GYQ ++ LVS+ Y   D+      I
Sbjct: 64   VELKVDTEFG-------------VCDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
              +WL++I    +I L GG  G + +A      + A++ +    ++FG   Y+ ++ H+ 
Sbjct: 111  PKNWLKDINLANVICLNGGQQGELGKAILAKDYRKADEIINQNVEIFGANNYI-IEIHKL 169

Query: 191  --GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
                +     + ++ A  + L  VATN ++F+  +DY+ H++   +   T +  + R  +
Sbjct: 170  EYENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM   FS LP  ++NT+ IA+RC+ + ++  P LP             E
Sbjct: 230  FTKEQYLKSAEEMYETFSALPVLVDNTLAIAKRCNVMFELGKPCLPTVDIPAG----LTE 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVIARMKFSGYFLIVAD 362
            +         GL+ RL +    +     +     Y+ RL  E+++I  M FSGYFLIV D
Sbjct: 286  KEYFSKLCYQGLDKRLEKILANRSADKHEHIIKVYKDRLQREIDIICDMGFSGYFLIVED 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 346  FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLTYGLLFERFLNPERVSMPDFDIDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  
Sbjct: 406  CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P    + + + +     +   AD  V  ++E +QKLEGL R    HAAGIVI    +S  
Sbjct: 466  PGTTFN-KILKEGEPLYDEMQADEEVAEVIERAQKLEGLPRSLGKHAAGIVISPTKISDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----DL 598
             P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +        D+
Sbjct: 525  APIYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTIKSINAKRPADQKPLDI 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI
Sbjct: 585  ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMG
Sbjct: 645  PTFIDRKHGRKQIAYLHPLLEEVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KK  EEM++Q++ F  GA+K + I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTA
Sbjct: 705  KKKPEEMEQQRKIFKEGAAKYHNIDAKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIY 836
            W+K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   +    I 
Sbjct: 765  WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAISKGTIL 824

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L AIKG+G    + I+ E  A+  F S+ D   RVD +K+N++ LE+L FAGA+    
Sbjct: 825  LGLGAIKGLGGEAVKSILTERDAEGEFSSIFDLTRRVDLRKVNKKALEALCFAGAIKDIS 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRF 952
             +R     S++   K A +V +      +++F   +        LEK       N     
Sbjct: 885  RNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDTELEKECIVEEWNLKELL 944

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNIRLAA-MVVSKQQKKTR 1010
             NE++ LG YFSGH +D        +      +     + GN++R+ A M+    ++KT+
Sbjct: 945  INEKKALGMYFSGHIIDEESHWRNHVSFSDLNKIQQPNMDGNSVRIIASMITPAIRRKTK 1004

Query: 1011 KGSRIGWVTFSEPAKEYEANF 1031
             G  +  +   +     +   
Sbjct: 1005 TGKVLYIINIDDEFDRADCLI 1025


>gi|262278808|ref|ZP_06056593.1| DNA polymerase subunit III [Acinetobacter calcoaceticus RUH2202]
 gi|262259159|gb|EEY77892.1| DNA polymerase subunit III [Acinetobacter calcoaceticus RUH2202]
          Length = 1187

 Score =  972 bits (2513), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1039 (36%), Positives = 586/1039 (56%), Gaps = 47/1039 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + ++++    DQ PA+A+TD +NL +A++F       GI+P+
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNSCLKKGIKPL 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + +D                    + LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   LGSIIRLD---------------DAQHRVTLLAMSDIGWKSLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + +I+L G  S  + +    ++ Q A   L  + + FG+R+Y+ L R  
Sbjct: 108  VQKEWVLEQH-QDIIVLLGQHS-DVGQMLCSSNPQKAAPLLEAWLEKFGNRVYLALTRTD 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     +  +LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   RPR  
Sbjct: 166  RPGEEDFIQEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADNRRPRTY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ + K   EM+ +FSD+P A+ENT  IA+RC+  LQ+    LP +   +   I    +
Sbjct: 226  SPEQHFKTSDEMIELFSDIPSAIENTYHIAKRCNVKLQLGTYFLPDYPIPDGFTI----D 281

Query: 309  NELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE RL       +         + Y +R+D+E+ +I +M F GYFLIV D
Sbjct: 282  TYFEHLSKVGLEERLNYLYPVEKRGEDWLEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            P       AI  + + ++         +     + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLATAIDMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGVTRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +     D
Sbjct: 522  KITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSND 581

Query: 598  ---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               +  +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  QLNILNVPLDDAKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  + +R +G +    +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L  AD+LR
Sbjct: 642  MDLIPDFIHRMHGGD-FEYLHPLLEGVLEPTYGIMVYQEQVMQAAQICAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ F+ GA++ GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFLEGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TAW+K HYP EF+AA MT EM N + +     D R  NI ++PPSVN     F   +++
Sbjct: 761  HTAWLKAHYPAEFMAAVMTSEMQNTDSVVFLIDDCRNNNIDVLPPSVNMSTYHFHASNDK 820

Query: 835  IY-YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
               Y L AIKGVG    + ++++     P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEQAMQSVIDSRRQYGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR +   ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRQELKAFIPVKLNEITATRRGVTTVYAGLVIDVANFP---- 994

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
            +R+  V   +    +E + 
Sbjct: 995  NRVVIV-LDDGTARFEVSC 1012


>gi|229013809|ref|ZP_04170937.1| DNA polymerase III subunit alpha [Bacillus mycoides DSM 2048]
 gi|229135439|ref|ZP_04264226.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST196]
 gi|229169331|ref|ZP_04297041.1| DNA polymerase III subunit alpha [Bacillus cereus AH621]
 gi|228614094|gb|EEK71209.1| DNA polymerase III subunit alpha [Bacillus cereus AH621]
 gi|228648000|gb|EEL04048.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST196]
 gi|228747478|gb|EEL97353.1| DNA polymerase III subunit alpha [Bacillus mycoides DSM 2048]
          Length = 1107

 Score =  972 bits (2513), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1025 (35%), Positives = 584/1025 (56%), Gaps = 47/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPIIG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVIRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++  +              +VLL     GYQ L+++ S +      K    I 
Sbjct: 62   LTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEGIP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    +    AE+   T++ +F    Y++LQ H   
Sbjct: 107  KKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVAHTYQNMFS-NFYISLQHHAIQ 164

Query: 193  DRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  D
Sbjct: 165  DELLLQEKLPEFINKVNVPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRMKTD 224

Query: 252  HY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             Y LK+  EM ++FS   EA++NT+ IA RC   +  H   LP+F     +      +  
Sbjct: 225  QYYLKSSDEMGALFSHAEEAVQNTITIAERCQVEIPFHVNQLPKFPVPSNE----TNDTY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL+ R        G   + +  RLD ELNVI+RM FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLQKRY-------GTPKEAHIGRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYELLFERFLNPERVTLPDIDIDFPDIRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +    +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLLPRDIDIFSKLIPSKLGITLR-D 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 453  AYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+  + G ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVEKTGKQIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +I  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  QIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T +  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLENGYDETSSEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYVRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E   +K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    
Sbjct: 812  VTALLEEREEKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDGFGVSRTTLWRSLKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA                 + G    K    +    +   +   E+  LGFY S +P  
Sbjct: 872  EYANLAR-----------DFDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 920

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 921  QYAELGKELEIPSLAQ--AMRHKKKVQRAIVYITSVKVIRTKKLQKMAFITFCDQNDEME 978

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 979  AVIFP 983


>gi|229062288|ref|ZP_04199609.1| DNA polymerase III subunit alpha [Bacillus cereus AH603]
 gi|228717016|gb|EEL68697.1| DNA polymerase III subunit alpha [Bacillus cereus AH603]
          Length = 1107

 Score =  972 bits (2512), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1025 (35%), Positives = 584/1025 (56%), Gaps = 47/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPIIG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVIRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++  +              +VLL     GYQ L+++ S +      K    I 
Sbjct: 62   LTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEGIP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    +    AE+   T++ +F    Y++LQ H   
Sbjct: 107  KKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVAHTYQNMFS-NFYISLQHHAIQ 164

Query: 193  DRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  D
Sbjct: 165  DELLLQEKLPEFINKVNVPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRMKTD 224

Query: 252  HY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             Y LK+  EM ++FS   EA++NT+ IA RC   +  H   LP+F     +      +  
Sbjct: 225  QYYLKSSDEMGALFSHAEEAVQNTITIAERCQVEIPFHVNQLPKFPVPSNE----TNDTY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL+ R        G   + +  RLD ELNVI+RM FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLQKRY-------GTPKEAHIGRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYELLFERFLNPERVTLPDIDIDFPDIRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +    +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLLPRDIDIFSKLIPSKLGITLR-D 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 453  AYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+  + G ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVEKTGKQIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +I  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  RIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T +  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLENGYDETSSEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYVRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E   +K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    
Sbjct: 812  VTALLEEREEKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDGFGVSRTTLWRSLKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA                 + G    K    +    +   +   E+  LGFY S +P  
Sbjct: 872  EYANLAR-----------DFDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 920

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 921  QYAELGKELEIPSLAQ--AMRHKKKVQRAIVYITSVKVIRTKKLQKMAFITFCDQNDEME 978

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 979  AVIFP 983


>gi|325954953|ref|YP_004238613.1| DNA polymerase III subunit alpha [Weeksella virosa DSM 16922]
 gi|323437571|gb|ADX68035.1| DNA polymerase III, alpha subunit [Weeksella virosa DSM 16922]
          Length = 1463

 Score =  971 bits (2511), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1094 (32%), Positives = 565/1094 (51%), Gaps = 78/1094 (7%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            + +  E +P F HL  H+ +S+L+  +++ +++   A    PA+AITD  N+  A  F  
Sbjct: 252  ILEKFENAP-FSHLHNHTQFSILQSTITIKDLVKATAKQNMPAVAITDHGNMMGAFHFVD 310

Query: 61   K----------------ACAAG-----IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
                             A   G     I+PI+G +        +   +  KT       I
Sbjct: 311  AVYEHNQQVEEKNKELEAQGLGPTEKTIKPIVGVEFF------VCENHLDKTKKDNGYQI 364

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            V L     GY  L ++ S+  + D      RI    +++   EGLI+L+G   G I    
Sbjct: 365  VFLAKNKVGYHNLAKMASKGNI-DGFYYVPRIDREVIRQ-HKEGLIVLSGNLQGEIPNKI 422

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSL 218
                 + AE+ L  +K+ FGD  Y+ L RH   D  R +Q ++Q A  H + L+ATNN+ 
Sbjct: 423  LNIGERQAEEALEWWKEEFGDDFYIELMRHGQEDEDRVNQTLIQFAMKHNVKLIATNNTY 482

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            ++ +ED  AHD+L+ V  +   S                ++Y K+  EM ++F D+P A+
Sbjct: 483  YIDKEDSNAHDILLCVRDAEKQSTPIGRGRGFRFGFPNQEYYFKSSEEMKNLFRDIPHAI 542

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKEC--------DDIQKEEENELRNKAVAGLEVRL 323
             N  EI  +          +LP+F   E         D  ++ E   LR     G + R 
Sbjct: 543  INIQEIVDKVEEYKLRRDVLLPKFTIPEEFIHAEDEQDGGKRGENAYLRFLTYEGAKRRY 602

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                        +  +RLDFEL  I R  + GYFLIV DFI  A++  + VGPGRGS AG
Sbjct: 603  ET-------ITSEIEERLDFELTTIERTGYPGYFLIVQDFIAAAREMGVSVGPGRGSAAG 655

Query: 384  SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            S  AY L IT++DP+ + LLFERFLNPDR+SMPD DIDF  + R  V+ YV NKYG  +V
Sbjct: 656  SAVAYCLGITNLDPIEYDLLFERFLNPDRVSMPDIDIDFDDEGRSLVMDYVINKYGANQV 715

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND------------PAHPVSLQA 491
            AQIIT+G++ AK+++RD  R L +P  + D++ KLIPN               + +  + 
Sbjct: 716  AQIITYGTMAAKSSIRDTARVLDLPLYEADKIAKLIPNMKLSKIFQLDEKVLRNELRPED 775

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
            + +    +     +    + ++ +Q LEG  R+   HA G++I    ++  VP+     S
Sbjct: 776  LENVLELKRLSDGNDLTAQTIQQAQILEGSVRNTGVHACGVIITPDDITNFVPVTTAKDS 835

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYH 610
            DL +TQF+    E AGL+K DFLGLKTLTL++ ++  +  R  + +D   IP DD++TY 
Sbjct: 836  DLYLTQFDNSVAEFAGLLKMDFLGLKTLTLIKDTIKLVKLRHDIDIDPDQIPIDDNKTYE 895

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T+GIFQ ES GM++ +  ++P    D+IA+ +LYRPGP++ I  +  RK G E+
Sbjct: 896  LFQRGETIGIFQYESPGMQKHMRDLKPTVFADLIAMNALYRPGPMEYIPSFIRRKAGIEE 955

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I       +  L ET G+ +YQEQVM ++Q L+ +S  +ADVLR+AMGKK K  +DK K 
Sbjct: 956  ITYDLDACEEYLSETYGITVYQEQVMLLSQKLADFSKGDADVLRKAMGKKQKAVLDKMKP 1015

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            +FI  A+  G    I   I+     FA Y FNKSH+  YA I+YQTA++K HYP E++AA
Sbjct: 1016 KFIEQAAAKGHDPKILEKIWTDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAA 1075

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTT 849
             ++  M++++++  F ++ ++  I+++ P VN     F V  +N I + + A+KGVG+  
Sbjct: 1076 VLSNNMNDIKQVTFFMEECKRMGIKVLNPDVNESISKFNVNENNAIRFGMEAVKGVGSAA 1135

Query: 850  ARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL------ 902
             + I+ E   +  F S+ DF  RVD + +N++ +E+L+ AGA D FG+ R +        
Sbjct: 1136 VKAIIAEREKNGDFSSIFDFVKRVDLRVVNKKTIENLILAGAFDQFGFHRGRYFYQEDGT 1195

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSSVRFENEQRVLGF 961
             +L+ I KY    +  + +   ++F    GT  D +  L      +       E+ V+G 
Sbjct: 1196 TNLEKIIKYGGNYQAQKNSAQTSLFGGLDGTVEDIVPQLPDCDKWSIVQELYKEKEVIGM 1255

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVAT---IRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            + S HPLD YK  ++ +      + +     + G  + +  ++ +   + ++ G   G  
Sbjct: 1256 FISSHPLDEYKDEIKLISNMTLGQLIGREGEVSGRELSMCGIMSNVMHRISKNGKEYGSF 1315

Query: 1019 TFSEPAKEYEANFF 1032
            TFS+ +  Y+   F
Sbjct: 1316 TFSDYSDSYDFMIF 1329


>gi|56477932|ref|YP_159521.1| DNA polymerase III alpha chain [Aromatoleum aromaticum EbN1]
 gi|56313975|emb|CAI08620.1| DNA polymerase III alpha chain [Aromatoleum aromaticum EbN1]
          Length = 1164

 Score =  971 bits (2511), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1047 (39%), Positives = 613/1047 (58%), Gaps = 40/1047 (3%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
               P F+HL++HS YS+ +G + ++  + + AAD  PA+ I+D  NLF  ++F + A   
Sbjct: 4    SHEPCFIHLRLHSEYSISDGIVQIDQAIARAAADAMPALGISDLANLFGMVKFYKGARGK 63

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G++P++G    I                      +L+    +GY +L EL++R YL ++ 
Sbjct: 64   GMKPVVGVDTWITN----------DADRDKPFRALLICRNRKGYGQLCELLTRAYLDNKY 113

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            +    +   W  +     L+ L+G   G I +A    +  VAE+    + +LF D  Y+ 
Sbjct: 114  RSRAEMHRQWFADGAASDLLCLSGAMGGDIGQALVNGNPDVAERLAAEWAQLFPDAFYIE 173

Query: 186  LQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            LQR  H G + Y   Q VQLA    LP+VAT+   FL  ED++AH+  + +A   V++ K
Sbjct: 174  LQRAGHPGTEAYIR-QAVQLAGKLGLPVVATHPVQFLEPEDFKAHEARVCIAQGYVLADK 232

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  T + Y K++ EM ++F+D+PEALEN+VEIARRCS  +Q+    LP+F   E   
Sbjct: 233  RRPRDFTEEQYFKSQDEMCALFADIPEALENSVEIARRCSLTVQLGKNFLPQFPTPEGMT 292

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIA---KGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +    +  L  +A +GLEVRLA+   A   +    + Y  RL FE + I +M F GYFLI
Sbjct: 293  L----DEFLVAEAKSGLEVRLAELYPAEAERERQRRTYEDRLKFETDTIVQMGFPGYFLI 348

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK+N +PVGPGRGSGAGS+ AY+L ITD+DPL ++LLFERFLNP+R+SMPDFD
Sbjct: 349  VADFINWAKENGVPVGPGRGSGAGSLVAYSLRITDLDPLAYALLFERFLNPERVSMPDFD 408

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQD R  VI YV+++YG E V+QI TFG++ +KA +RDVGR L +PY   DRL KLI
Sbjct: 409  IDFCQDNRYRVIEYVRSRYGKEAVSQIATFGTMASKAVVRDVGRVLDLPYGLCDRLSKLI 468

Query: 480  PNDPAHPVSL-QAIADDSRFREA---RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            P + A PVSL +A   +S+  E         SV  L  +++ LEGL R+   HA G++I 
Sbjct: 469  PIEGAKPVSLAKAYEMESQIGEMMKDGNDGESVQELWSLAEPLEGLSRNVGMHAGGVLIA 528

Query: 536  DRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
               L+   P+Y  D     PV+QF+   +E  GL+KFDFLGL+ LT+++ +++++ +  G
Sbjct: 529  PGKLTDFCPLYIADGDEATPVSQFDKDDVEAVGLVKFDFLGLRNLTIIELAVEYVERLTG 588

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             K DL+ +PF D   Y +L    T  IFQ+ES GM++ L+ + PD  EDIIA+++LYRPG
Sbjct: 589  EKPDLAALPFTDPAAYQILKDANTTAIFQVESEGMKKLLKKLAPDRFEDIIAVLALYRPG 648

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+ + +V  +  RK G+++I   HP + P L  T GVI+YQEQVMQI+Q++ GY+L  AD
Sbjct: 649  PLGSGMVDDFILRKKGQQEIDYFHPDLKPCLDPTYGVIVYQEQVMQISQIIGGYTLGGAD 708

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM K +E   +GA + G    +A  +F+L+ KFA+YGFNKSH AAYAV
Sbjct: 709  MLRRAMGKKKAEEMAKHRETIAAGAKQKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAV 768

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KV 830
            ++Y TAW+K H+   F+AA+M+ ++DN + I+ F +DA    + I+PP VN     F   
Sbjct: 769  VTYHTAWLKAHHCAAFMAATMSADLDNTDTIRIFFEDAVANGVTILPPDVNASDFRFVPT 828

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                I Y L A+KG G    R I+ A  A   F  L DFC+RVD + +NRRV+E+L+ AG
Sbjct: 829  DRKTIRYGLGAVKGAGEPAVRAILAAREAGGAFRDLFDFCARVDRRAVNRRVIEALIRAG 888

Query: 890  ALDCFGYS----RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            A D    S    R +LL ++    + A+    N       +F              +   
Sbjct: 889  AFDLIEPSGTADRARLLATVGLAMEAAEQAAANAMQG--GLFDLIPEAAGAAPEYVRARP 946

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +   R + E+  +GF+ SGHP + ++  +R+   +   E   +     + LA +V+  +
Sbjct: 947  WSERERLKEEKLAIGFFLSGHPFNSFRKEVRRFVRRPLAELEPSRD--LLMLAGVVMDVR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             K T +G  + +V   + +   E + F
Sbjct: 1005 TKMTGRGK-MAFVVLDDGSHVREVSVF 1030


>gi|283458361|ref|YP_003362984.1| DNA polymerase III subunit alpha [Rothia mucilaginosa DY-18]
 gi|283134399|dbj|BAI65164.1| DNA polymerase III, alpha subunit [Rothia mucilaginosa DY-18]
          Length = 1180

 Score =  971 bits (2510), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1066 (34%), Positives = 558/1066 (52%), Gaps = 53/1066 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  F HL VH+ YS+L+GA  L ++          ++A +D   LF A +F ++A A  I
Sbjct: 3    TKEFTHLHVHTEYSMLDGAARLGDLFTYAKELGMKSMATSDHGFLFGAFDFWRQAKAHDI 62

Query: 68   QPIIGCQLDIDM------QDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSR 118
            +PIIG +  +        +  ++  +  +           + +   T EG   L    S 
Sbjct: 63   KPIIGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYTHMTMWAETTEGMHNLFRASSI 122

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L  Q     R+    LQ   ++GLI  TG  SG +           A +    F+ +F
Sbjct: 123  ASLEGQLY-KPRMDREVLQTY-SKGLIATTGCPSGEVQTRLRLGQFDEAVQAASEFRDIF 180

Query: 179  -GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
              D  Y  +  H    +R  +  + +LA    LP VATN+  +  +ED+ AH  L+ V  
Sbjct: 181  GKDNFYCEVMDHGLDIERNVQEDLHRLAKKLNLPFVATNDLHYTRQEDHTAHAALLCVQS 240

Query: 237  STVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
             + ++   R +   D+ YL++  EM ++F D+P A ENT+EIA RC+      A  +P F
Sbjct: 241  GSTLTDPKRFKFDADNFYLRSAEEMYALFGDIPGACENTLEIAERCNVEFNTKANYMPNF 300

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
               E ++    EE+    +   GL  R   G   K       R++ ++E+ VI  M F G
Sbjct: 301  PVPEGEN----EESWFVKEVEKGLHYRFPDGVPDK------VRKQAEYEVGVITSMGFPG 350

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD++PL   L+FERFLNPDR+SM
Sbjct: 351  YFLVVADFINWAKRNGIRVGPGRGSGAGSMVAYAMRITDLNPLDHDLIFERFLNPDRVSM 410

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFD+DF   RR EVI YV  KYG E+VAQI+TFG+++AK AL+D  R +  PYS  +RL
Sbjct: 411  PDFDVDFDDRRRGEVIDYVTEKYGEEKVAQIVTFGTIKAKQALKDASRVMDQPYSVGERL 470

Query: 476  CKLIPND-PAHPVSL--------QAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRH 524
             K +P D     ++L        +  A+ +  R       D    ++ E ++ LEGL R 
Sbjct: 471  TKAMPPDVMGKNIALANVYNEEDKRYAEAADLRALIDDPVDKIYGQVFETAKGLEGLKRQ 530

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HAAG+++  + L  ++P+ R       +TQF+    E  GLIK DFLGL+ LT++  
Sbjct: 531  WGVHAAGVIMSSKDLVDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTIISD 590

Query: 585  SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +++ +   RG+ +DL  +P DD E+Y LL    TLG+FQL+   MR  L+ M+P+  E I
Sbjct: 591  AVENIKANRGIDLDLESLPLDDPESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEFEHI 650

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVMQ 697
             A+++LYRPGP+  ++   Y  RKNGK++I  IHP ++     +L  T G+I+YQEQVM 
Sbjct: 651  SAVLALYRPGPMGANSHTNYALRKNGKQEIEPIHPELEEPLKDILDTTYGLIVYQEQVMA 710

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ ++ Y+L EAD+LRRAMGKK K E+DKQ   F  G   NG S+     ++++L  F+
Sbjct: 711  IAQKVANYTLGEADLLRRAMGKKKKAELDKQYATFHDGMISNGYSEGAIKALWDILLPFS 770

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            DY FNK+H AAY ++SY TA++K HYP E++AA +T   DN +K+  +  + R   I ++
Sbjct: 771  DYAFNKAHTAAYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGITVL 830

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876
             P VN   + F    + I + + AI+ VG      ++ A  +   ++S  DF  +V  + 
Sbjct: 831  APDVNESTLTFAPVGDDIRFGMGAIRNVGANVVEGMIAAREEKGRYESFNDFLKKVPLQV 890

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTF 934
             N+R +ESL+ AGA D  G++R  L    +     A  V++       ++F         
Sbjct: 891  CNKRTIESLIKAGAFDDLGHTRRSLSLIHEAAVDAAVAVKRKEAAGQFDLFGSLGMDDAL 950

Query: 935  SDK--ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---- 988
             D+  +T+      +   +   E+ +LG Y S HPL   +  L         + +     
Sbjct: 951  GDELTVTIPDVPEWDRREKLNFERDMLGLYVSDHPLRGLERALSDAASHSVHDIIGEDSH 1010

Query: 989  TIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAK-EYEANFF 1032
               G  + +A M+    ++  +  G++   V   +P+       FF
Sbjct: 1011 VRDGETVTIAGMLTGVSRRIAKSSGNQYASVELEDPSGATITVMFF 1056


>gi|289675281|ref|ZP_06496171.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. syringae
            FF5]
          Length = 1081

 Score =  971 bits (2510), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/961 (40%), Positives = 553/961 (57%), Gaps = 45/961 (4%)

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
            Y+ L EL+SR ++  Q    + I   W+ +  +EG+I L+    G I  A    +   A+
Sbjct: 1    YRNLTELISRGFIEGQRNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEAD 59

Query: 169  KRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            + L  + ++F DR Y+ +QR +R  D       V LA  H  PLVATN+  F+ + D+EA
Sbjct: 60   ELLREWLEVFPDRFYIEVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEA 119

Query: 228  HDVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            H+  + +     +    R    +   YLK+  EM  +FSDLPEALENTVEIA+RC+  ++
Sbjct: 120  HETRVCIGEGRALDDPRRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVK 179

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRL 341
            +    LP F   +   I    +   R  +  GLE RLA               Q Y  RL
Sbjct: 180  LGTHFLPNFPIPDGMTI----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRL 235

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            +FEL++I +M F GYFLIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + 
Sbjct: 236  NFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYD 295

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPDFD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV
Sbjct: 296  LLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDV 355

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             R     Y   DRL K+IP +    +  +A   +   R+    D     + E++ KLEG+
Sbjct: 356  ARVQGKSYGLADRLSKMIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGI 414

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R+   HA G+VI    L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT+
Sbjct: 415  VRNVGKHAGGVVIAPTKLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTI 474

Query: 582  LQKSLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            +  +L  + +         +D++ IP DD  TY LL    T  +FQLES GM++ ++ ++
Sbjct: 475  IDWALKTINRDRAKVNEEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLK 534

Query: 637  PDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVI 689
            PDC+ED+IALV+L+RPGP+ + +V  + NRK+G+ ++   H       + P+L  T G+I
Sbjct: 535  PDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGII 594

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQIAQ+++GY+L  AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NI
Sbjct: 595  LYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNI 654

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            F+L+ KFA YGFNKSH+AAY ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ 
Sbjct: 655  FDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEV 714

Query: 810  RQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
            R   +++  P VNT    F V  D RI Y L AIKGVG      I +A  D PF  L DF
Sbjct: 715  RTMKLRLDAPDVNTSEFKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQDGPFKDLFDF 774

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQ 913
            C+RVD K++N+R L+ L+ +GALD  G                +R  LL +L+   + A+
Sbjct: 775  CARVDLKRVNKRTLDGLIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAE 834

Query: 914  WVEKNRTNKHENIFAHE--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               ++  + H ++F     +          K    +   R   E+  LG Y +GHP+D Y
Sbjct: 835  QTARSHDSGHADLFGGLFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEY 894

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +  +R+   +   +           +A ++++ +  K +KG ++G++T  + +   EA+ 
Sbjct: 895  EGEIRRFARQRIIDLKPARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASL 952

Query: 1032 F 1032
            F
Sbjct: 953  F 953


>gi|229006940|ref|ZP_04164570.1| DNA polymerase III subunit alpha [Bacillus mycoides Rock1-4]
 gi|228754340|gb|EEM03755.1| DNA polymerase III subunit alpha [Bacillus mycoides Rock1-4]
          Length = 1096

 Score =  970 bits (2509), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1015 (35%), Positives = 580/1015 (57%), Gaps = 46/1015 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L+ A  ++ ++ +       +++ITD N ++  + F +     G++PIIG    +  ++
Sbjct: 1    MLKSACKIDELVSRAKELGFSSLSITDENVMYGVIPFYKACKKNGVRPIIGLTASVFSEE 60

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                             +VLL     GYQ L+++ S +      K    I   WL     
Sbjct: 61   E-----------EQSYPLVLLAENEMGYQNLLKISSTIMT----KSKDGIPKKWLSHYA- 104

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQV 200
            +GLI ++ G  G I++       ++AE+    ++ +F    Y++LQ H   D  + + ++
Sbjct: 105  KGLIAISPGKDGEIEQLLLQGRDEIAEEVARAYQNMF-GSFYMSLQHHAIQDELFLQEKL 163

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY-LKNRSE 259
             Q A    +P+VATN+  ++++ D    + L++V   T ++  DRPR+  D Y LK+ +E
Sbjct: 164  PQFANEINIPVVATNDVRYVNQSDALVQECLLSVQSGTKMTDPDRPRLKTDQYYLKSSAE 223

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M ++FS   EAL+NTV IA RC   +  H   LP+F     +      +  LR     GL
Sbjct: 224  MEALFSHAEEALQNTVCIAERCHVEIPFHVNQLPKFPVPSNE----TSDAYLRRICEDGL 279

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
              R        G     +R+RL+ EL VI+ M FS YFLIV DF+++  ++ I  GPGRG
Sbjct: 280  NKRY-------GAVQDVHRKRLNHELEVISCMGFSDYFLIVWDFMKYGHEHGILTGPGRG 332

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            S AGS+ +Y L ITDIDP+ ++LLFERFLNP+R+++PD DIDF   RRDE+IRYV++KYG
Sbjct: 333  SAAGSLVSYVLEITDIDPIEYNLLFERFLNPERVTLPDIDIDFPDIRRDEMIRYVKDKYG 392

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
              RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +  +A  +    R
Sbjct: 393  QLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSRVGITLK-EAYEESGSLR 451

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
            E    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  +D+ VTQ+ 
Sbjct: 452  EFVQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGHNDVYVTQYP 510

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
             + +E+ GL+K DFLGL+ LTLL+  L F+  + G ++D+  +P  D +T+ LL    T 
Sbjct: 511  AEVLEELGLLKMDFLGLRNLTLLENILTFIVNKTGKQIDIRNLPLQDEKTFQLLGRGDTT 570

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G+FQLES GMR  L  ++P+  EDI+A+ +LYRPGP++ I  +   K+GK +I  +H  +
Sbjct: 571  GVFQLESGGMRNVLRSLKPNEFEDIVAVNALYRPGPMEQIPTFIESKHGKCQIHYLHSDL 630

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
             P+LK T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK +E +D++++ F+ G  +
Sbjct: 631  KPILKSTYGVIVYQEQIMQIASQLAGFSLGEADLLRRAVSKKNREILDQERKHFVQGCLR 690

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP+EF+ A ++  + N
Sbjct: 691  NGYDETSAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYPLEFMTALLSSAIGN 750

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
             +KI ++ ++ ++    ++PPS++    +F++  N I YSL +I+ +G  T   ++E   
Sbjct: 751  EDKIVQYIRETKRKGFHVLPPSLHRSSYNFQIEGNAIRYSLLSIRNIGMATVNAVIEERE 810

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
              PF  L +FC R+ +K +  R LE+ V+AG  D F  SR  L  S+    +YA    + 
Sbjct: 811  RNPFQDLFEFCLRMPAKFVTERNLEAFVWAGCFDDFQVSRTTLFNSIKGALEYASLARE- 869

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                       E    S  +  E+ S      +  NE+  LGFY S +P   Y  +++++
Sbjct: 870  --------LGEESVPKSVYVQGEELSF---IEQLNNEKEALGFYLSSYPTAQYAKLVKEL 918

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             I    +++   R    R    V   +  +T+K  ++ +VTF +   E EA  FP
Sbjct: 919  EIPSLAQAMRQKRNVQ-RAIVYVTGVKVIRTKKLQKMAFVTFCDQNDEMEAVVFP 972


>gi|225012068|ref|ZP_03702505.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium MS024-2A]
 gi|225003623|gb|EEG41596.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium MS024-2A]
          Length = 1436

 Score =  970 bits (2509), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/1077 (32%), Positives = 560/1077 (51%), Gaps = 62/1077 (5%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            T  L   P FVHL  HS +S+L+    ++ +++  A+ + PA+AITD  NL  A  F + 
Sbjct: 245  TSALAHVP-FVHLHNHSQFSVLQATSRISQLVEATASYKMPAVAITDHANLMGAFHFIKA 303

Query: 62   ACAAG--------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
              A          I+PIIGC+  +         +  ++       +V L    +GY  L 
Sbjct: 304  IKAHNKDLEEAQQIKPIIGCEFYVCDD------HTDRSRRDDGYQMVFLAKNKKGYHNLA 357

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            ++ S  Y+ +      RI    +++   E LI+L+G   G +         + AE+ L  
Sbjct: 358  KMTSMAYV-NGFYYVPRIDREIVKQY-KEDLIVLSGNMYGELASKILNLGDRQAEEALQW 415

Query: 174  FKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +   F +  Y+ L RH    +    + +V+LA  +++PL+ATNN+ +  +E+  AHD+L+
Sbjct: 416  WYSEFKEDFYIELMRHGEEGEDRANAVLVKLALQYDIPLIATNNTYYTKKEEANAHDILL 475

Query: 233  AVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
             V      +                ++Y K+  EM ++F+D+PEA+ N   +  +     
Sbjct: 476  CVKEGEKQATPIGRGRGFRYGFPNHEYYYKSPEEMKALFADIPEAITNIGALIDKIESFD 535

Query: 286  QVHAPILPRFIEKE------CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
                 +LP+F   E        D +K E   L      G E R        G  +++ ++
Sbjct: 536  LAREVLLPKFEIPESYQIHEDSDGKKGENKYLHYLTYQGAEKRY-------GTLSEEIKE 588

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            R+DFEL VIA+  + GYFLIV D I  A+  ++ VGPGRGS AGSV AY L IT+IDP++
Sbjct: 589  RIDFELGVIAKTGYPGYFLIVQDLIAAARDLDVSVGPGRGSAAGSVVAYCLKITNIDPIK 648

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            + LLFERFLNPDR+SMPD DIDF  + R +V+ YV  KYG  +VAQIIT+G++ AK+++R
Sbjct: 649  YDLLFERFLNPDRVSMPDIDIDFDDEGRSKVMDYVIKKYGSNQVAQIITYGTMAAKSSIR 708

Query: 460  DVGRALQMPYSQVDRLCKLIPN------------DPAHPVSLQAIADDSRFREARLADPS 507
            D  R L +P  + DR+ KL+PN            +    +    +   +  +     D  
Sbjct: 709  DTARVLDLPLGEADRIAKLLPNIKLAKLFSSSDKELKETLRNDEVLRVNEIKNLADEDSL 768

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
                ++ +  LEG  R+  THA G++I    ++Q VP+     SDL VTQF+   +E AG
Sbjct: 769  SGETIQQAIVLEGSLRNTGTHACGVIITPDDITQFVPVATAKDSDLYVTQFDNSVVEDAG 828

Query: 568  LIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGLKTLTL++ ++  +  +  + +D    P DD +TY L     T+GIFQ ES+
Sbjct: 829  LLKMDFLGLKTLTLIKDTVKLVKYKHNIDLDPDTFPLDDEKTYELFQRGDTVGIFQYESA 888

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            GM++ L+ ++P    D+IA+ +LYRPGP++ I  + +RKNG E+I    P++   L+ET 
Sbjct: 889  GMQKYLKDLKPTVFADLIAMNALYRPGPLEYIPSFVDRKNGNEEISYDLPVMAEYLEETY 948

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+ +YQEQVM ++Q L+G+S  +ADVLR+AMGKKI   + K K +FI G   NG  + I 
Sbjct: 949  GITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKIFALLQKLKPQFIEGGKNNGHPEEIL 1008

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              I++    FA Y FNKSH+  YA+I YQTA++K HYP E++AA ++  M +++++  F 
Sbjct: 1009 EKIWKDWEAFAAYAFNKSHSTCYALIGYQTAYLKAHYPAEYMAAVLSNNMSDIKQVTFFM 1068

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
            ++ R+  + ++ P VN     F V     I + + AIKGVG      I+E   D+ ++S+
Sbjct: 1069 EECRRLGLNVLGPDVNESFYKFAVNDQQAIRFGMGAIKGVGKGAVDTIIEHRKDQRYESI 1128

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ-------SLDNIQKYAQWVEK 917
             D   R+D +  N++  E+L  AG  D F    R Q           L+ + ++    ++
Sbjct: 1129 FDLVKRIDLRAANKKAFENLALAGGFDSFLNVKRAQYFNPDGDGVTFLEKVLRFGSKYQE 1188

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
            N  +   ++F  E  +    +T+       + +R + E+ V+G Y S HPLD +   +  
Sbjct: 1189 NLNSSQTSLFGEETNSTYQDLTIPDCEAWTNLIRLKKEKEVVGIYISSHPLDDFTHEIEH 1248

Query: 978  MGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   +   +  +      +  +V   Q  ++R G         + + +YE   F
Sbjct: 1249 FVTLSLNQLGALDQLVNREFSIGGIVNEIQHLESRNGKGWARFIVEDFSDQYEFRIF 1305


>gi|224025746|ref|ZP_03644112.1| hypothetical protein BACCOPRO_02487 [Bacteroides coprophilus DSM
            18228]
 gi|224018982|gb|EEF76980.1| hypothetical protein BACCOPRO_02487 [Bacteroides coprophilus DSM
            18228]
          Length = 1265

 Score =  970 bits (2508), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1147 (31%), Positives = 585/1147 (51%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59
             FVHL VH+ YS+L+G  S+  ++DK  A+    IA+TD  ++F   EF           
Sbjct: 3    DFVHLHVHTQYSILDGQASIPRLVDKAIANGMRGIAVTDHGDMFGIKEFFNYVNKKNGGT 62

Query: 60   -----------------------------------QKACAAGIQPIIGCQLDIDMQDNLK 84
                                               + A     +PIIGC++ +      +
Sbjct: 63   NGEIKDLKKKIAALESGKAESENPEAELAACKEQLEAARKKLFKPIIGCEMYVA---RRR 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            + ++      +   +V+L    +GY  LI+LVS+ +         R   + L++   EGL
Sbjct: 120  LEDKDGKQDQSGYHLVVLAKNLKGYHNLIKLVSKAWTKG-FYMRPRTDRAELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-----------YD 193
            I+ +    G + R       + AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IVCSACLGGEVPRRISAGQLEEAEEAIRWYKNLFGDDYYLELQRHKATVPRANHETFKLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                 ++++ A  +++ LV TN+  F+ EE+ EAHD L+ ++    +   +R   T   +
Sbjct: 238  EVVNQKLIEYARKYDIKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K R EM  IF+D+PEAL NTV+I  +  F    HAPI+P F+  E    ++E       
Sbjct: 298  MKTREEMNEIFADVPEALSNTVDICDQVEFYSIDHAPIMPTFVIPESFGTEEEYRKKFTE 357

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L   A  G   R  + 
Sbjct: 358  KDLFDEFTQDENGNVVMDEASAKAKIERLGGYEKLYRIKLEADYLAKLAYDGARRRYGEE 417

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                    ++ ++R+ FEL+++  M F GYFLIV DFI  A++  ++ VGPGRGS AGS 
Sbjct: 418  LD------EEVQERIKFELHIMKTMGFPGYFLIVQDFISAAREKLDVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA 
Sbjct: 472  VAYCLGITQIDPIKYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRLCKLIP+  P   ++L  AIA     + A +
Sbjct: 532  IITYGTMATKLAIKDVARVQKLPLSESDRLCKLIPDKIPDKKLNLPNAIAYVPELQAAEV 591

Query: 504  -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558
             +DP +   ++ ++ LEG  R+   HA G +I    ++  VP+     ++    + VTQ+
Sbjct: 592  SSDPILRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL++++++L+ +   +G+ +++  IP DD  TY L +   T
Sbjct: 652  EGSVIEDTGLIKMDFLGLKTLSIIKEALENIKNSKGIVLNIDEIPIDDPATYRLYSDGRT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPI 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGK 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA+M+  + 
Sbjct: 832  KNGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAATMSRNIS 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-E 855
            N+ +I K   +++   I+++ P VN   + F V     I + L AIKGVG +  + I+ E
Sbjct: 892  NITEITKLMDESKATGIRVLGPDVNESLLKFSVNRRGDIRFGLGAIKGVGESAVQSILSE 951

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS--------LDN 907
               + P+ S+ DF  RV+    NR+ +E+L  AG  D FG  + +            ++ 
Sbjct: 952  REKNGPYKSIFDFVQRVNLSACNRKNIENLALAGGFDSFGNIKREDFFMKNSKDETFVET 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         +      +   R   E+ ++G Y S HP
Sbjct: 1012 LVRYGSKYQMDKAAAINSLFGGEHEVEVATPEIISAPAWSDLERLNKERELVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  +L  +     EE      ++  ++ L  +V   ++  T+ G   G     + + 
Sbjct: 1072 LDEYAVVLENVCNVHMEELSNLTPLQNRDLILGGIVTGVREGYTKSGKPYGIAKVEDYSG 1131

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1132 VAEFAFF 1138


>gi|32472323|ref|NP_865317.1| DNA polymerase III alpha subunit [Rhodopirellula baltica SH 1]
 gi|32443559|emb|CAD73001.1| DNA polymerase III alpha subunit [Rhodopirellula baltica SH 1]
          Length = 1199

 Score =  970 bits (2507), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1063 (33%), Positives = 558/1063 (52%), Gaps = 40/1063 (3%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
               + ++  FVHL  HS YSLL+GA  +  ++ +       A+A+TD  NL  ALEF +K
Sbjct: 15   ATEIPETKPFVHLHCHSHYSLLDGAGDIGKLVKRAVDHGMNALALTDHGNLHGALEFYRK 74

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A  AGI PIIG +  I             +       + LL     G++ LI+L S   L
Sbjct: 75   AKDAGINPIIGYEAYIAPGSRFDKGG-ASSSKAASYHLTLLAQNRTGFKNLIKLASAASL 133

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-----SSQVAEKRLLTFKK 176
                    RI    L++   EG++ L+G  S    RA           + A+K    F K
Sbjct: 134  EG-FYFKPRIDKEILEKY-NEGIVCLSGCVSSEFSRAILKGIQTKEHEEEAKKIAGWFHK 191

Query: 177  LFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            +FGDR ++ +  +     R +    V +A    LPLVAT++  ++++ED EA D+++ + 
Sbjct: 192  VFGDRYFIEIMNNDVDIQRTQLEGAVDIANKMGLPLVATSDCHYVNQEDAEAQDIMLCIN 251

Query: 236  HSTVVSQKDRPRVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                 +   R ++  D +  ++  +M   F  L +A+  + EIA      L+ +    P 
Sbjct: 252  TGRFRTDNTRMKMENDQFFLRSPQQMYEKFPGLEDAVGRSQEIADTVDIQLEFNKYFFPS 311

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA--KGYHAQDYRQRLDFELNVIARMK 352
            F   +    +    + LR     GL  R          G  + +   RLD EL+VI ++ 
Sbjct: 312  FPCPD----ELTPLDYLRKLCEQGLMERYEGDDERIIDGKLSDEVMARLDRELDVIEKLG 367

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            +  YFLIV DF+  A+   I     RGSG G++  YAL ++ + PLR+ LLFERFL+  R
Sbjct: 368  YPTYFLIVWDFVNHARDIGIS-ATARGSGVGAIVCYALYMSHVCPLRYDLLFERFLDESR 426

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
               PD DIDF ++RR EVI YV+ +YG E V QI TFG+L AKAA++D GRAL +P S+V
Sbjct: 427  TEPPDIDIDFEKERRIEVIDYVKERYGSEMVCQIGTFGTLAAKAAIKDTGRALGIPLSRV 486

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            +++ +L+P++    +  +++   +  +     DP +  LL+++ K+EGL R+  THAA +
Sbjct: 487  NQITELVPDELKITI-AKSLEKSADLKMIYDGDPEIRELLDLAMKIEGLARNVGTHAAAV 545

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI D+PL++ VP+ R       +TQ+ M  +E +GL+K DFLGL+ LT+L +++  + Q 
Sbjct: 546  VIADKPLTEYVPLGRVPGKQDVITQWAMVDVEASGLLKMDFLGLRNLTILSRTVKLVEQT 605

Query: 593  G-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +D    P DD  +Y LL    T G+FQLES G+R  L+ M+PD   DIIA  +LYR
Sbjct: 606  TGTTIDPLKFPLDDKPSYALLQRGETKGVFQLESGGIRDLLQRMKPDTFNDIIATAALYR 665

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP++  +V  Y N K+G+++    HP++  +L+ET  +++YQEQVM+I   L    L++
Sbjct: 666  PGPLEGGMVDDYVNIKHGRQQPEYKHPVLKEILEETNSIMVYQEQVMRILNRLGDVPLAK 725

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            A    +A+ KK +  +D   + FI+G+ KNG+++  A +I+ L+ KFA YGFNKSH+ AY
Sbjct: 726  AYTCIKAISKKKQALIDANHDVFIAGSIKNGLAEKDAEDIWNLIVKFAGYGFNKSHSTAY 785

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDN-----VEKIKKFCQDARQFNIQIMPPSVNTP 824
            A+++YQTA++K HYPVEF+AA ++ ++        + + +  +D  + +I+++PP+VN  
Sbjct: 786  ALVAYQTAYLKAHYPVEFMAALLSSDISGRNFKRKDALVEHMEDCDRMDIEVLPPNVNQS 845

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
              DF V D +I ++L+AIK  G +TA  I E    + PF  + DFC RVD    NR  +E
Sbjct: 846  DADFGVLDGKIPFALSAIKACGGSTAISIEEERKKNGPFKDIFDFCERVDPHDCNRSSIE 905

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--------AHEKGTFS 935
            +L+ AGA DCFG  R QL   L+   +    V+ ++     + F        A   G  S
Sbjct: 906  TLIKAGAFDCFGAKRSQLASVLERAMQAGAKVQADKKTGQASFFDAFDEEVDADSNGESS 965

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
              + L          +   E+ VLGFY   HPL  ++  L        E        + +
Sbjct: 966  AAVPLPDIEEWPDREKLLAEKEVLGFYLDSHPLAEFENKLATFRTHTTESMADCKDRDEV 1025

Query: 996  RLAAMVVSKQQKKTRK---G--SRIGWVTFSEPAKEYEANFFP 1033
             +  M+ S +   T+    G  S+       + A       +P
Sbjct: 1026 IVGGMISSIKIAHTKNPKPGAPSKYANFDLEDMAGSVRCICWP 1068


>gi|120437353|ref|YP_863039.1| DNA polymerase III subunit alpha-1 [Gramella forsetii KT0803]
 gi|117579503|emb|CAL67972.1| DNA polymerase III subunit alpha-1 [Gramella forsetii KT0803]
          Length = 1461

 Score =  969 bits (2506), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1086 (32%), Positives = 557/1086 (51%), Gaps = 66/1086 (6%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + L++ P F HL  HS +S+L+  +S+ +++   A +   A+A+TD  N+  A  F ++ 
Sbjct: 255  EKLDEVP-FAHLHNHSQFSVLQSTISIPDLIAAAADEDMNAVALTDHANMMGAFHFVKEI 313

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQG--------------KTPFPTVPSIVLLVSTAEG 108
                           +  ++LK   +G              K+       +V+L     G
Sbjct: 314  GTYNKSVKEHNATAEENGEDLKKPLKGIVGCEFFVCENHADKSRKDNGYQVVMLAKNKNG 373

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
            Y  L ++ S+ Y  D      RI    ++E   E +I+LTG   G +         + AE
Sbjct: 374  YHNLAKMSSKAYT-DGFYYVPRIDKEVIREY-KEDIIVLTGNLYGEVPSKILNLGEKQAE 431

Query: 169  KRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            + L+ +K+ FGD LY+ + RH   D  R    +V+ +  H++ L+ATNN+ +  +ED  A
Sbjct: 432  EALVWWKEEFGDDLYIEMMRHDQEDENRVNPVLVEFSKKHDVKLIATNNTYYWKQEDANA 491

Query: 228  HDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            HD+L+ V      +                ++Y K+ S+M  +F DLP A+ N  EI  +
Sbjct: 492  HDILLCVKDGEKQATPIGRGRGYRYGLPNTEYYFKSGSQMKKLFKDLPNAISNIQEIVDK 551

Query: 281  CSFILQVHAPILPRFIEKE--------CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
                      +LP F   E         D  ++ E   L++    G + R          
Sbjct: 552  VESFELARDVLLPAFEIPEEFLSEEDLADGGKRGENAFLKHITFEGAKKRYPD------- 604

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
               +  +RL+FEL+VI    + GYFLIV DFI+ A++  + VGPGRGS AGSV AY L I
Sbjct: 605  ITPEIEERLNFELSVIENTGYPGYFLIVEDFIRAAREMGVSVGPGRGSAAGSVVAYCLWI 664

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV  KYG  +VAQIIT+G++
Sbjct: 665  TNIDPMKYDLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIKKYGANQVAQIITYGTM 724

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPND--------PAHPVSLQ----AIADDSRFRE 500
             AK+++RD  R L +P    DR+ KLIPN             +  +     I   +    
Sbjct: 725  AAKSSIRDTARVLDLPLMDSDRIAKLIPNTKLGKLFAMDDKTIKSKFRGDEIEKINELFN 784

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
                D      +  ++ LEG  R+   HA G++I    ++  VP+     SDL VTQF+ 
Sbjct: 785  ISEGDDLEAETVNQARILEGSVRNTGIHACGVIITPGDITNYVPVSVAKDSDLYVTQFDN 844

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLG 619
              +E AGL+K DFLGLKTLTL++ ++  +  R  + +D    P DD ETY L     T+G
Sbjct: 845  SVVESAGLLKMDFLGLKTLTLIKDTVKIVKGRHDIDLDPDSFPLDDEETYKLFQRGETVG 904

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            IFQ ES GM++ ++ ++P   +D+IA+ +LYRPGP++ I  +  RK+G E+I    P ++
Sbjct: 905  IFQYESPGMQKHMQSLKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGDEEISYDLPEME 964

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
              L+ET G+ +YQEQVM ++Q L+G+S  EAD+LR+AMGKK+   + + K +FI G ++ 
Sbjct: 965  EYLEETYGITVYQEQVMLLSQKLAGFSKGEADMLRKAMGKKLVALLAQLKPKFIEGGNEK 1024

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G    +   I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA ++  M+++
Sbjct: 1025 GHPAEVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMNDI 1084

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS- 857
            + +  F ++ ++  + ++ P VN     F V  DN + + + AIKGVG+     I+E   
Sbjct: 1085 KSVTFFMEECKRMKLNVLGPDVNESYYKFSVNKDNAVRFGMGAIKGVGSGAVATIVENRK 1144

Query: 858  -ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNI 908
              + P+ S+ D   R+D +  N++  E+L  AG  D FG   R Q           L+ +
Sbjct: 1145 TKEGPYRSIFDMAKRIDLRSANKKAFENLALAGGFDGFGNTHRAQYFHDDGNGMSFLEKV 1204

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             KYAQ  ++++ +   ++F         +  +       +  +   E+ V+G Y SGHPL
Sbjct: 1205 VKYAQKFQESQNSSQVSLFGEASDVQIPEPEVPGCEEWGTMEKLRREKEVVGIYISGHPL 1264

Query: 969  DVYKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            D +K  +         +   + ++    + L  +VV  Q + ++ G      T  +  + 
Sbjct: 1265 DDFKIEMSYFSNGKLSDCRDLESVVNRELTLGCVVVDVQHRVSKNGKGWAIFTVEDYDES 1324

Query: 1027 YEANFF 1032
            YE   F
Sbjct: 1325 YEFKIF 1330


>gi|91216678|ref|ZP_01253643.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC 700755]
 gi|91185147|gb|EAS71525.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC 700755]
          Length = 1452

 Score =  969 bits (2506), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1084 (33%), Positives = 565/1084 (52%), Gaps = 70/1084 (6%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + L++S SFVHL  H+ +S+L+  +++ +++   A    PA+AITD  N+  A  F    
Sbjct: 255  EQLQES-SFVHLHNHTQFSVLQSTMAVPDLVAAAAKHNMPAVAITDHANMMGAFHFVNAV 313

Query: 63   CAAG-------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                             I+PIIGC+  +  +D+   T++          +V+L    +GY
Sbjct: 314  KKHNSAIANDSENTSQPIKPIIGCEFFV-CEDHTDRTHKD-----NGYQMVILAKNKKGY 367

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L ++ S  +         RI    L E   + LI+L+G   G I           AE+
Sbjct: 368  HNLAKMSSMGFTKG-FYYIPRIDKK-LIETYKDDLIVLSGSLYGEIASKLLNLGENQAEE 425

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             L+ +K+ FGD  YV + RH+  D  R    +++LA  H++ LVATNN+ +  ++D  AH
Sbjct: 426  SLVWWKETFGDDFYVEIMRHQQEDEERANEALIRLANKHDINLVATNNTYYADQKDANAH 485

Query: 229  DVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            D+L+ V      +                 +Y K+  EM S+F DLP+A+ NT  IA + 
Sbjct: 486  DILLCVKEGEKQATPIGRGRGYRYGLPNDQYYFKSAEEMKSLFKDLPQAISNTEAIANKV 545

Query: 282  SFILQVHAPILPRFIEKE--------CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
                     +LP F+  E         D  ++ E   L++    G + R        G  
Sbjct: 546  EAFELAREVLLPAFVIPEQFLDEADKTDAGKRGENAYLKHLTFEGAKRRY-------GEL 598

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
            +++ + RLDFEL+VIA   + GYFLIV DFI+ A+K  + VGPGRGS AGS  AY L IT
Sbjct: 599  SEEIKDRLDFELSVIANTGYPGYFLIVEDFIREARKMGVSVGPGRGSAAGSAVAYCLKIT 658

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            +IDP+++ LLFERFLNP+R+SMPD DIDF  + R +V+ YV  KYG  +VAQIIT+G++ 
Sbjct: 659  NIDPIKYDLLFERFLNPERVSMPDIDIDFDDEGRSKVMDYVIEKYGQNQVAQIITYGTMA 718

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPN--DPAHPVSLQAIADDSRFREAR--------- 502
            AK+A+RD  R L +P  + DR+ KLIP+        S+       +FR            
Sbjct: 719  AKSAIRDTARVLDLPLYEADRIAKLIPDMSKLGKIFSMNEKEIRKKFRSEEVDKVLELIA 778

Query: 503  --LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
                D      +  ++ LEG  R+   HA G++I    +++ VP+     S+L VTQF+ 
Sbjct: 779  ISEQDSPEAETVNQARILEGSVRNTGIHACGVIITPDDITKFVPVSVAKDSNLYVTQFDN 838

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLG 619
              +E AGL+K DFLGLKTLTL++ +++ +  R     D    P DD +TY L     T+G
Sbjct: 839  SVVEDAGLLKMDFLGLKTLTLIKDTVEIVKARHEVDLDPEAFPLDDEKTYELFQRGETVG 898

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            IFQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RK+G+E I    P + 
Sbjct: 899  IFQYESLGMQKHMKDLKPTVFGDLIAMNALYRPGPMEYIPSFIKRKHGEEDISYDLPEMQ 958

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
              L+ET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK+K+ + K K +FI+ A  N
Sbjct: 959  EYLEETYGITVYQEQVMLLSQKLASFTKGEADVLRKAMGKKLKDVLAKLKPKFINQAKDN 1018

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G ++     I++    FA Y FNKSH+  YA ++YQTA++K HYP E++AA ++  M ++
Sbjct: 1019 GHNEEKLEKIWKDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYPAEYMAAVLSNNMSDI 1078

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA 858
            +K+  F ++ ++  + ++ P VN     F V  D+ + + + AIKGVG      I+E   
Sbjct: 1079 KKVSFFMEECKRMRLPVLGPDVNESYYKFSVNKDDAVRFGMGAIKGVGGGAVNTIVEHRK 1138

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQK 910
               + S+ D   R+D +  N++  ESL +AGA D  G   R Q  Q+       L+ + K
Sbjct: 1139 KGHYLSIFDLSKRIDLRAANKKAFESLAYAGAFDSLGEVHRAQYFQATDGDLTFLEKVIK 1198

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            YA   ++N+ +   ++F         +  +      +S    + E+ V+G + SGHPLD 
Sbjct: 1199 YAARYQENKNSSQVSLFGESSEVQIPEPEVPPCEPWHSMRTLKAEKEVVGLFLSGHPLDD 1258

Query: 971  YKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            +K  +        +E           + LA +V     K ++ G         +  + +E
Sbjct: 1259 FKLEINSFCRSNLKEVAEIENHLNKELSLAGVVTDVNHKVSKTGKGFATFVLEDYNESHE 1318

Query: 1029 ANFF 1032
               F
Sbjct: 1319 FWIF 1322


>gi|224438383|ref|ZP_03659310.1| DNA polymerase III subunit alpha [Helicobacter cinaedi CCUG 18818]
 gi|313144825|ref|ZP_07807018.1| DNA polymerase III subunit alpha [Helicobacter cinaedi CCUG 18818]
 gi|313129856|gb|EFR47473.1| DNA polymerase III subunit alpha [Helicobacter cinaedi CCUG 18818]
          Length = 1144

 Score =  969 bits (2506), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1086 (35%), Positives = 603/1086 (55%), Gaps = 73/1086 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL +H+ YSLL+GA  + N+  +I      ++A+TD  N+F AL+F       G+ P
Sbjct: 2    NFTHLHLHTEYSLLDGANKIKNLAKRIRELGMESVAVTDHGNMFGALDFYVSMKEEGLNP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  I   D L               + L      GY+ L+ L S+ ++ +      
Sbjct: 62   IIGMEAYIHNGDEL-----NDKSIKQRFHLCLFAKNEVGYKNLMYLSSQAFI-NGFYYYP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTFKKLFG 179
            RI    L+E  +EGL+  +    G ++     N+           ++A++  L +K +FG
Sbjct: 116  RINKRLLRE-RSEGLVCSSACLQGEVNWQLNTNNPRNVQFGAKGYEMAKEVALEYKDIFG 174

Query: 180  DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +  Y+ + RH   D+ + + Q+++L    ++ ++ATN++ +  ++D +A ++ M VA   
Sbjct: 175  EDFYLEIMRHGINDQLFLDEQILRLGRELDIKVIATNDTHYTFQKDAKAQEIAMCVAMGK 234

Query: 239  VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---------- 287
             ++ KDR + +  + Y+K+  +M  +F D+PE LENT EIA++C   L +          
Sbjct: 235  TLNDKDRLKHSVKEFYVKSPQQMAQLFLDVPEVLENTQEIAQKCRLNLNLKNIEIKNKHT 294

Query: 288  ------HAPILPRFIEKECDDIQKE--------------EENELRNKAVAGLEVRLAQGA 327
                  H+P  P   ++  +  +KE              +      K   GL+ RL   A
Sbjct: 295  GEVILEHSPATPPNFKRTQEYAKKENLPQILNCELESIDDAAYFAFKCREGLKERLEHIA 354

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
             +K    Q Y+ RL+ E+ +I  MKF GY LIV DF+ +AK+N IPVGPGRGS AGS+ A
Sbjct: 355  ESKH---QTYKDRLEREIEIINSMKFPGYMLIVWDFVNFAKQNGIPVGPGRGSAAGSLVA 411

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            YAL IT+IDPL++ LLFERFLNP+R+SMPD D+DF Q+RR E+I YV N YG   VAQ++
Sbjct: 412  YALKITNIDPLKYDLLFERFLNPERVSMPDIDMDFSQERRQELIEYVSNTYGKFNVAQVV 471

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ----------AIADDSR 497
            TF SL AK  +RDV R L MP    D   KLIPN+    ++ Q          A   + +
Sbjct: 472  TFNSLLAKGVIRDVARVLDMPLKDADGFAKLIPNELGITLTKQAGKDGKEKDGAWEKEPK 531

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVT 556
             +E    +P   ++ + +  LEGL R+   HAA IVI  +  L   VP+Y + + +    
Sbjct: 532  IKELVERNPLAKQVWDYAVLLEGLKRNTGLHAAAIVIDSNDELWNKVPLYTNDKMNGVAV 591

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTK 615
            Q++M W+E   LIKFDFLGLKTL ++  ++  + +R  V +D S +  +D + Y  + + 
Sbjct: 592  QYSMNWLEPVDLIKFDFLGLKTLDVISDAIKLVKKRYGVDIDFSTMDMEDSKVYETIQSG 651

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVS 673
             TLG+FQ+ES GM+   + ++P   EDIIA+++LYRPGP+++ +   + NRK+G   I  
Sbjct: 652  STLGLFQIESEGMQALAKRLKPSNFEDIIAMLALYRPGPMESGMLDDFVNRKHGLASITY 711

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                ++P+LK T GVI+YQEQVMQI Q + G+SL  AD++RRAMGKK  +EM + K+ F 
Sbjct: 712  AFNALEPILKPTYGVIVYQEQVMQIVQTIGGFSLGGADLVRRAMGKKKLDEMLRLKKEFA 771

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
             GA K G ++T A +++EL+ KFA YGFNKSH+AAYA+I+YQTA++KT+Y  EF+AA +T
Sbjct: 772  DGAEKQGYNRTKAEDLWELIVKFAGYGFNKSHSAAYAMITYQTAYLKTYYEHEFMAAMLT 831

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----RIYYSLAAIKGVGTTT 849
             E   VE + K+  + +   I+I+PP +N    DF VG+     +I + L+AIKG+G + 
Sbjct: 832  SETRKVESVAKYINEVKSLGIEIIPPHINISENDFGVGEFDGVKKIIFGLSAIKGLGESP 891

Query: 850  ARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
              +I+ +   +  + ++EDF +RVD  K+ +R LE L+ +G LD  G+SR  +L+++D +
Sbjct: 892  IENIITDREKNGEYKNVEDFIARVDFSKMTKRSLEPLIKSGGLDGLGFSRHTMLENIDLL 951

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                +  +K       ++F       +  + ++     +     + E   +G Y SGHPL
Sbjct: 952  CDKGREKDKAHEMMSNSLFGEGGVEINVHLPIQDKPEYDIRTLLDYEYECMGIYISGHPL 1011

Query: 969  DVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKE 1026
            D +K  L K+ G+    E       +   L   ++  ++K ++K G   G + F +   +
Sbjct: 1012 DDFKEKLDKIKGVVKSVELEDLELNSTCMLVGKILDIKRKISKKTGKPFGTIDFLDYGGK 1071

Query: 1027 YEANFF 1032
             E   F
Sbjct: 1072 IEFMVF 1077


>gi|146299070|ref|YP_001193661.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
 gi|146153488|gb|ABQ04342.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
          Length = 1510

 Score =  969 bits (2506), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/1092 (32%), Positives = 564/1092 (51%), Gaps = 81/1092 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------SQ 60
            K+  F HL  H+ +S+L+  + + NI+   A +  PA+A+TDT N+  A  F        
Sbjct: 257  KAAKFAHLHNHTQFSVLQSTIGIGNIVAATAKNGMPAVAMTDTGNMMGAFHFVSAVMNHN 316

Query: 61   KAC--------AAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
            KA          AG       I+PI+GC      + N+   +  K+       +VLL   
Sbjct: 317  KAASGKNKALVEAGEEPTETEIKPIVGC------EFNICENHLDKSKKDNGYQVVLLAKN 370

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
              GY  L ++ S  Y         RI  + +++     +++L+G   G I          
Sbjct: 371  KAGYHNLAKMASIAYTEG-FYYVPRIDKNIVEKY-KGDIMVLSGNLYGEIPSKILNIGEN 428

Query: 166  VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEED 224
             AE+ L+ +K+ FG+  Y+ + RH   D  R ++ +++ +  H + L+ATNN+ +L++ED
Sbjct: 429  QAEEALIWWKEQFGEDFYLEVMRHNQEDENRVNKTLIEFSQKHNVKLIATNNTYYLNKED 488

Query: 225  YEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
              AHD+L+ V      +                ++Y K+ +EM  +F+DLPEA+ N  E+
Sbjct: 489  ANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSEAEMKKLFADLPEAIINIQEV 548

Query: 278  ARRCSFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
              +          +LP+F         E E D   + E   LR+  + G + R       
Sbjct: 549  IDKVEGYSLYRDVLLPKFEIPDEFMVPEDEEDGGVRGENKYLRHLTMEGAKRRY------ 602

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
             G   +  ++RLDFEL  I+   + GYFLIV DFI  A+K ++ VGPGRGS AGS  AY 
Sbjct: 603  -GEITESIQERLDFELMTISNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAAGSAVAYC 661

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L IT+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV NKYG ++VAQIIT+
Sbjct: 662  LGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGQKQVAQIITY 721

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLADP- 506
            G +  K+A+RD  R L +P  + DR+ KLIP       +L       +   ++A  +D  
Sbjct: 722  GKMATKSAIRDTARVLDLPLFEADRIAKLIPGMMPSKWNLARFISESEEEVKKALRSDEF 781

Query: 507  -SVDRLLEIS-------------QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
             +V  L+ I+             + LEG  R+   HA G++I    ++  VP+     SD
Sbjct: 782  DNVKELIAIANEDDLAGETIQQAKILEGSMRNTGIHACGVIITPSDITNYVPVTTAKDSD 841

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHL 611
            L VTQF+    E AGL+K DFLGLKTLTL++ ++  +  R  + +D    P DD ETY L
Sbjct: 842  LYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIDLDPDNFPIDDEETYAL 901

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                 T+GIFQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RKNG E+I
Sbjct: 902  FQRGETVGIFQYESPGMQKYMKDLKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGDEEI 961

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
                      L ET G+ +YQEQVM ++Q L+G++  EADVLR+AMGKK K+ +DK K +
Sbjct: 962  KYDLDACAEYLSETYGITVYQEQVMLLSQSLAGFTKGEADVLRKAMGKKQKDVLDKMKPK 1021

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            F+  A++ G    I   I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA 
Sbjct: 1022 FVEQAAQKGHDAKILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAV 1081

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTA 850
            ++  M++++++  F ++ ++  +Q++ P VN     F V D+  + + + AIKGVG+   
Sbjct: 1082 LSNNMNDIKQVSFFMEECKRMGLQVLGPDVNESYYKFTVNDDYAVRFGMGAIKGVGSGAV 1141

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS----- 904
              I+E   D  + S+ D   R+D +  N++ +E+L  AG  D F G +R Q         
Sbjct: 1142 ETIVENRKDGRYKSIFDLAKRIDLRAANKKAIENLALAGGFDSFEGTTRAQYFHDDGDGI 1201

Query: 905  --LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
               +   +Y    ++N  +   ++F         +  +      ++  +   E+ V+G Y
Sbjct: 1202 TFYEKAMRYGSKFQENENSSQVSLFGEASEVQIAEPVVPPCEDWSTMEKLAKEKEVVGIY 1261

Query: 963  FSGHPLDVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             SGHPLD ++  ++       E    +    G N+  A ++ + Q +  + G        
Sbjct: 1262 ISGHPLDDFRFEMKYFCNARLEALKSMNEYVGKNLNFAGIINNVQHRVAKNGKGWAAFNL 1321

Query: 1021 SEPAKEYEANFF 1032
                + YE   F
Sbjct: 1322 EGYDESYEFKIF 1333


>gi|255034240|ref|YP_003084861.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053]
 gi|254946996|gb|ACT91696.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053]
          Length = 1216

 Score =  969 bits (2506), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1096 (31%), Positives = 555/1096 (50%), Gaps = 85/1096 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL  H+ +SLL+GA  +  +  K   D  PA+AITD  N+F   EF  +    GI+PI
Sbjct: 3    FSHLHCHTQFSLLDGAADIKKLFKKAKEDNMPAVAITDHGNMFGVFEFVAEGNKQGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+  +    +++   + K         +LL     GY+ L+++ S  ++     +  R
Sbjct: 63   VGCEFYVVEDRHVRQFTKDKK--DVRHHQLLLAKDEIGYKNLVKMCSLGFIEGMYGKYPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    + +   +GLI  T      I +       + AE+    +  LFGD  YV LQRH 
Sbjct: 121  IDKDLIVQYH-KGLIATTCCIGAIIPKTIIRQGEEAAEREFKWWLDLFGDDFYVELQRHD 179

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK------ 243
              D+Y  ++ +++ A  + + ++ +N+S ++  +D+ AHD+L+ +      S        
Sbjct: 180  IRDQYIVNEVLIKFARKYNVKIICSNDSHYVDRDDWNAHDILLCINTGDKQSTPSAKDFD 239

Query: 244  ---------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                              Y K  SEM+ +F+DLPE+L+NT EI  +   +      +LP 
Sbjct: 240  DEKGIPKGSRFAFYNDQFYFKKTSEMLQLFNDLPESLDNTNEIVDKIKTLDLRKDILLPN 299

Query: 295  FIEKECDDIQKEEE---------------NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
            F   +        E                 LR+    G   +             +  +
Sbjct: 300  FPIPDEFKTHTLSEMVGKKELTADVLNQWEYLRHLTFEGARKKY-------DVVTPEIEE 352

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL+FEL  I  M F GYFLIVADFI   +K  + +GPGRGS AGS  AYA+ IT+IDP++
Sbjct: 353  RLNFELQTIRNMGFPGYFLIVADFIDAGRKMGVFIGPGRGSAAGSAVAYAIGITNIDPVK 412

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            + LLFERFLNPDR+SMPD D DF  D R +VI YV  KYG+ +VAQI+T+G++ AK+A++
Sbjct: 413  YDLLFERFLNPDRISMPDIDTDFDDDGRQKVIDYVVKKYGYNQVAQIVTYGTMAAKSAIK 472

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSL----------------------QAIADDSR 497
            DV R + +P    + L KL+P+ P + ++L                        + +  R
Sbjct: 473  DVARVMDLPLPDANMLAKLVPDKPTYNMTLNRIFTAPLEGEGSLMKKEGISPDELENVKR 532

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
             R   + +     +L+ +++LEG  R+   HAAGI+I    L++++P+     SD  +TQ
Sbjct: 533  MRAIAVGNDLQASVLQEARRLEGTVRNTGIHAAGIIIAPSDLTEIIPVSTSKDSDFLITQ 592

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-LSLIPFDDHETYHLLTTKG 616
            +  K IE AG+IK DFLGL+ L++++++L  +         +  +P DD + + L     
Sbjct: 593  YQGKIIEDAGVIKMDFLGLRNLSIIKEALRMIKNNYGHDIVIDDVPLDDPKVFELFQRGE 652

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            T  IFQ ES GM++ +  + PD  E +IA+ +LYRPGPI  I  +  RKNG+E++    P
Sbjct: 653  TNAIFQFESDGMKKYMRDLIPDRFEHLIAMNALYRPGPIAYIPNFIRRKNGQEEVTYDLP 712

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
             ++  L +T G+ +YQEQVM ++Q L+G++  +AD LR+AMGKK  E ++K K  F+ G 
Sbjct: 713  ELEEYLADTYGITVYQEQVMLLSQKLAGFTKGQADTLRKAMGKKQIETLNKLKGDFMKGG 772

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
            ++ G+       I+     FA Y FNKSH+  YA ++YQTA++K HYP E++AA +T  +
Sbjct: 773  TEKGLDAKKLEKIWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYPAEYMAAVLTSSL 832

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIME 855
             +++KI  F ++ +  ++ ++ P +N     F V     I + LA +KG G      I+E
Sbjct: 833  GSIDKITFFMEECKNLSLPVLGPDINESERQFSVNKKGEIRFGLAGVKGSGDAAVESIIE 892

Query: 856  ASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS--------L 905
              A   PF  + DF +RV+ + +N++ LESL +AGA DCF  Y R Q   +        +
Sbjct: 893  ERAKGGPFKDVFDFMTRVNLRTVNKKTLESLAYAGAFDCFTDYHRAQYFTAEQGENGTFI 952

Query: 906  DNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            + + +YA      +++   ++F    + G+   K         +   +   EQ V+GFY 
Sbjct: 953  EKLIRYANNYHAEKSSAQASLFGMLGDSGSTLAKPKAADIGPWDDLAKLRYEQEVVGFYI 1012

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNN--------IRLAAMVVSKQQKKTRKGSRI 1015
            SGHPLD ++  L        ++ +    G          I +A +V S Q++ ++ GS  
Sbjct: 1013 SGHPLDTFRAELDNFCNCTLDKVMEINEGERAPKYYGKDINVAGIVTSAQERMSKNGSLF 1072

Query: 1016 GWVTFSEPAKEYEANF 1031
                  +     E   
Sbjct: 1073 MIFKIEDYQGAMEMLI 1088


>gi|163846593|ref|YP_001634637.1| DNA polymerase III subunit alpha [Chloroflexus aurantiacus J-10-fl]
 gi|222524387|ref|YP_002568858.1| DNA polymerase III subunit alpha [Chloroflexus sp. Y-400-fl]
 gi|163667882|gb|ABY34248.1| DNA polymerase III, alpha subunit [Chloroflexus aurantiacus J-10-fl]
 gi|222448266|gb|ACM52532.1| DNA polymerase III, alpha subunit [Chloroflexus sp. Y-400-fl]
          Length = 1248

 Score =  969 bits (2506), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/1055 (33%), Positives = 530/1055 (50%), Gaps = 46/1055 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS YSLL+G  +   I  + A     +IA+TD   ++ A+EF + A  AGI+P
Sbjct: 3    DFVHLHVHSEYSLLDGYATTKGITQRAAELGMDSIALTDHGVMYGAMEFYEAAKKAGIRP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG +  +          +G         ++LL     GY+ L++L +R +L   GK   
Sbjct: 63   IIGVEAYMAPGSLSDPMTKGAK---NYFHLLLLAQNEVGYRNLVKLTTRAHLDGMGKGVF 119

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               RI    L E   EGLI+ +   +G +         + A +    ++ L   DR Y+ 
Sbjct: 120  ARPRIDRQLL-EAHHEGLIVTSACLAGEVLHYLKAGDRRAAVETAAYYRDLLGPDRYYLE 178

Query: 186  LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            LQ H           ++V++     +PLVAT+++ F+  ED      +MA+  +   ++ 
Sbjct: 179  LQLHDNTPELEPLNDELVKIGRELGIPLVATSDAHFVRPEDKATQHKIMAMGMNMTYAEF 238

Query: 244  DRPRVTPDHYLK--NRSEMVSIFSDLP-EALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                   D      +  +M   F     E LENT  IA  C   L+     LP F     
Sbjct: 239  CAREYAMDESYHILSGEQMWERFKRYGTEPLENTRRIADMCRLKLEFGRVQLPVFELPPG 298

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D      + LR     GL  R        G    +Y  RL +EL+VI +  F  Y LIV
Sbjct: 299  HDA----ASYLRLVCEEGLMRRF------NGQPPAEYMNRLAYELDVINQTGFPDYMLIV 348

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D++++A+   IP  P RGS   S+  YAL ITD+DP++  LLFERFL+P+R+ MPD D 
Sbjct: 349  WDYVKFARSRGIPCLP-RGSAGASLVLYALGITDVDPVKNKLLFERFLSPERLEMPDIDT 407

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR E++ Y+ +KYG E VAQIIT+G+L AKAA+RD+GR L +   +VDR+ KLIP
Sbjct: 408  DFADSRRQEILDYIADKYGRENVAQIITYGTLGAKAAIRDMGRVLGLDPGEVDRVAKLIP 467

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              P      QA+      ++     P +  L++ +QK+EG  R   THA G+V+   PL+
Sbjct: 468  ALPVGTTIAQALERVPELKQIYETQPHLRELIDEAQKVEGRMRSVGTHACGVVVSRTPLA 527

Query: 541  QLVPMYRDVRS-DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            +LVP+ R  +  +  +  F    + K GL+K D LGL  L+++ ++L ++ Q    ++ L
Sbjct: 528  ELVPLQRTTKDENALMAAFEGPTLAKMGLLKMDILGLTNLSVVAEALKYIEQTTGRRMWL 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD + +  L    T  +FQLES+GM + L  ++P  +ED+ A+V+LYRPGP++ I
Sbjct: 588  DEIPLDDPKVFEALGRGETKNVFQLESAGMTRYLMQLKPTRVEDLYAMVALYRPGPLEQI 647

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             VY   KN   +I  +HP+++P+L +T GVI+YQEQ+MQ+ Q ++ Y+L +A ++ +A+ 
Sbjct: 648  PVYIQNKNNPSQIRYLHPVLEPILSDTYGVIVYQEQIMQLLQTVADYTLGQAYIVIKAIS 707

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK +E M + +  F  G  + GISK IA  ++EL+  FA Y FN+ HA  Y ++SYQTAW
Sbjct: 708  KKNRELMAENEAIFKQGCQRKGISKEIADQLWELILPFAGYSFNRPHATLYGLLSYQTAW 767

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR---- 834
            +K +YPVE++ A +T     +E + K   +AR+  + ++PP VN     F +        
Sbjct: 768  LKVNYPVEYMTAVLTGAGGVIEDVTKAALEARRLGVAVLPPDVNRSHKGFTIEPLAQPLP 827

Query: 835  --------IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                    I + L AIK VG      I+ A  A  PF SLED C+RVD   LN+R LESL
Sbjct: 828  PGVTHQRGIRFGLMAIKNVGEGPVEAIIAAREAGGPFQSLEDLCARVDRHALNKRTLESL 887

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHEKGTFSDKITL 940
            + AGALD    +R Q L  LD         +K R     ++F     A        +I L
Sbjct: 888  IKAGALDSLPGTRRQKLAILDQAVSAGIEAQKAREIGQSSLFDIFGEATTANPVVARIPL 947

Query: 941  EKF--SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
                 S  +       E+ +LG   S  P+      +   G        A   G  +   
Sbjct: 948  PLIVESPADQKEVLLWEKELLGLNISDDPIAKALEGVDLSGATELGSIDAEHIGETLTFV 1007

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++   ++  T+KG  +      +     E   FP
Sbjct: 1008 GVLSGVRRIATKKGETMLVANLEDLTGSIEIVVFP 1042


>gi|254373926|ref|ZP_04989408.1| DNA-directed DNA polymerase [Francisella novicida GA99-3548]
 gi|151571646|gb|EDN37300.1| DNA-directed DNA polymerase [Francisella novicida GA99-3548]
          Length = 1159

 Score =  969 bits (2506), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1041 (37%), Positives = 593/1041 (56%), Gaps = 41/1041 (3%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
             +L +D +               +  +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVDTEFG-------------ICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
              SWL E+  E +I L GG  G + +A        A++ +    ++FG   Y+ ++ H+ 
Sbjct: 111  PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIINQNIEIFGTNNYI-IEIHKL 169

Query: 191  --GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
                +     + ++ A  + L  VATN ++F+  +DY+ H++   +   T +  + R  +
Sbjct: 170  EYENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP             E
Sbjct: 230  FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVNIPAG----LTE 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVIARMKFSGYFLIVAD 362
            +         GL+ RL +    +     +     Y+ RL  E+++I  M F GYFLIV D
Sbjct: 286  KEYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 346  FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  
Sbjct: 406  CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P      + + +     E   AD  V  ++E +QKLEGL R    HAAGIVI    +S  
Sbjct: 466  PGTTFK-KILHEGEPLYEEMQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----DL 598
             P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +        D+
Sbjct: 525  APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI
Sbjct: 585  ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMG
Sbjct: 645  PTFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASKNG-ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KK  EEM+KQ++ F  GA+K+  I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTA
Sbjct: 705  KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIY 836
            W+K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I 
Sbjct: 765  WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTIL 824

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L AIKG+G    + I+ E      F S+ D C RVD +K+N++ LE+L +AGA+    
Sbjct: 825  LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRF 952
             +R     S++   K A +V +      +++F   +        LE+       N     
Sbjct: 885  KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNIRLAA-MVVSKQQKKTR 1010
             NE++ LG YFSGH +D        +     E+     + GN++R+ A M+    ++KT+
Sbjct: 945  INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004

Query: 1011 KGSRIGWVTFSEPAKEYEANF 1031
             G  +  +   +     +   
Sbjct: 1005 TGRVLYIINIDDEFDRADCLI 1025


>gi|15646069|ref|NP_208251.1| DNA polymerase III subunit alpha [Helicobacter pylori 26695]
 gi|2494191|sp|P56157|DPO3A_HELPY RecName: Full=DNA polymerase III subunit alpha
 gi|2314638|gb|AAD08502.1| DNA polymerase III alpha-subunit (dnaE) [Helicobacter pylori 26695]
          Length = 1211

 Score =  969 bits (2505), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1078 (34%), Positives = 587/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  ++      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFEDDASYFAYKAREGLKERLVLVPKEKH---DQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L AIKGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F   +G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMEGGTKEQVVLDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGIADILDRYGKFELMLF 1068


>gi|134302515|ref|YP_001122485.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis WY96-3418]
 gi|134050292|gb|ABO47363.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis WY96-3418]
          Length = 1159

 Score =  969 bits (2505), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1041 (37%), Positives = 593/1041 (56%), Gaps = 41/1041 (3%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
             +L +D +               +  +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVDTEFG-------------ICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
              SWL E+  E +I L GG  G + +A        A++ +    ++FG   Y+ ++ H+ 
Sbjct: 111  PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYI-IEIHKL 169

Query: 191  --GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
                +     + ++ A  + L  VATN ++F+  +DY+ H++   +   T +  + R  +
Sbjct: 170  EYENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP             E
Sbjct: 230  FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVNIPAG----LTE 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVIARMKFSGYFLIVAD 362
            +         GL+ RL +    +     +     Y+ RL  E+++I  M F GYFLIV D
Sbjct: 286  KEYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 346  FIRWSKENDIPVGPGRGSGAGSMVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  
Sbjct: 406  CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P      + + +     E   AD  V  ++E +QKLEGL R    HAAGIVI    +S  
Sbjct: 466  PGTTFK-KILHEGEPLYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----DL 598
             P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +        D+
Sbjct: 525  APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI
Sbjct: 585  ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMG
Sbjct: 645  PTFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASKNG-ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KK  EEM+KQ++ F  GA+K+  I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTA
Sbjct: 705  KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIY 836
            W+K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I 
Sbjct: 765  WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTIL 824

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L AIKG+G    + I+ E      F S+ D C RVD +K+N++ LE+L +AGA+    
Sbjct: 825  LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRF 952
             +R     S++   K A +V +      +++F   +        LE+       N     
Sbjct: 885  KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNIRLAA-MVVSKQQKKTR 1010
             NE++ LG YFSGH +D        +     E+     + GN++R+ A M+    ++KT+
Sbjct: 945  INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004

Query: 1011 KGSRIGWVTFSEPAKEYEANF 1031
             G  +  +   +     +   
Sbjct: 1005 TGRVLYIINIDDEFDRADCLI 1025


>gi|325286607|ref|YP_004262397.1| DNA polymerase III subunit alpha [Cellulophaga lytica DSM 7489]
 gi|324322061|gb|ADY29526.1| DNA polymerase III, alpha subunit [Cellulophaga lytica DSM 7489]
          Length = 1479

 Score =  969 bits (2505), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1099 (31%), Positives = 554/1099 (50%), Gaps = 82/1099 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-------- 58
            +S  F HL  H+ +S+L+  +S+ +++   A +  PA+A+TD  N+  A  F        
Sbjct: 257  ESAEFSHLHNHTQFSILQSTISVPDLIKATAKNNMPAVAMTDHANMMGAFHFVNGVLNHN 316

Query: 59   -------------SQKAC----AAGIQPIIGCQLDIDM------QDNLKMTNQGKTPFPT 95
                          +         G +P+     + ++      +  +   +  K+    
Sbjct: 317  KGVKSRNDANEIRYEATQENRLEEGEEPLHEFIPEKEITPIIGCEFQVCEDHTNKSQKDN 376

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
               IV L     GY  L ++ S  ++  +     RI    +++   E LI+LTG   G +
Sbjct: 377  GYQIVFLAKNKNGYHNLAKMSSIAFVDGK-YYVPRIDKKIIEQY-KEDLIVLTGNLYGEV 434

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVAT 214
                       AE  LL +K+ FGD LY+ + RH   D  R +Q +++ A  H + LVAT
Sbjct: 435  PSLVLNVGENQAEDALLWWKEQFGDDLYMEIMRHGQEDEDRVNQVLIKFAKKHNVKLVAT 494

Query: 215  NNSLFLSEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDL 267
            NN+ ++ +E+  AHD+L+ V      S                ++Y K+  EM  +F D+
Sbjct: 495  NNTYYVEKENAYAHDILLCVKDGEKQSTPIGRGRGYRYGLPNQEYYFKSSDEMKELFKDI 554

Query: 268  PEALENTVEIARRCSFILQVHAPILPRFIEKE--------CDDIQKEEENELRNKAVAGL 319
            PEA+ N  E+  +          +LP F   E         D  ++ E   LR+    G 
Sbjct: 555  PEAITNIQEVVDKIETFTLARDVLLPAFDIPEEFVFEEDKIDGGKRGENKFLRHLTYEGA 614

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
            ++R        G    +  +RLDFEL VI +  + GYFLIV DFI+ A+K ++ VGPGRG
Sbjct: 615  KIRY-------GEITPEIDERLDFELKVIEKTGYPGYFLIVEDFIRAARKMDVSVGPGRG 667

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            S AGS  AY L IT++DP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV +KYG
Sbjct: 668  SAAGSAVAYCLWITNLDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVIDKYG 727

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-------------DPAHP 486
              +VAQIIT+G++ AK+++RD  RAL +P    DR+ KLIPN                  
Sbjct: 728  SNQVAQIITYGTMAAKSSIRDTARALDLPLGDADRMAKLIPNMSKLKKIIGVDEKTLKSK 787

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             + + +A  +   E    D      L  +  LEG  R+   HA G++I    +++ VP+ 
Sbjct: 788  FNSEELAKINELLEISEGDDLESETLNQAYVLEGSVRNTGIHACGVIITPDDITKFVPVA 847

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                SD+  TQF+   +E AGL+K DFLGLKTLTL++ ++  +  + GV++D    P DD
Sbjct: 848  LAKDSDMYCTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKIVKAKHGVELDPENFPLDD 907

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +TY L     T+G+FQ ES GM++ +  ++P    D+IA+ +LYRPGP++ I  +  RK
Sbjct: 908  QKTYELFQRGETVGVFQYESPGMQKHMRSLKPTVFADLIAMNALYRPGPMEYIPSFIARK 967

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G E+I+      +  L ET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK K  +
Sbjct: 968  HGTEEIIYDLDACEEYLAETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQKHVL 1027

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            DK K +FI  AS  G +      I++    FA Y FNKSH+  YA I+YQTA+ K HYP 
Sbjct: 1028 DKMKPKFIEQASAKGHAVDKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYCKAHYPA 1087

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKG 844
            E++AA ++  M++++ +  F ++ ++  ++++ P VN     F V D   + + + A+KG
Sbjct: 1088 EYMAAVLSNNMNDIKTVTFFMEECKRMGLEVLGPDVNESYYKFAVNDAGAVRFGMGAVKG 1147

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLL 902
            VG      I+E    D P+ S+ D   R+D +  N+R  E+L  AG  D FG   R Q L
Sbjct: 1148 VGRGAVETIVENRKKDGPYKSVFDLAKRIDLRAANKRAFENLTLAGGFDSFGDTHRAQYL 1207

Query: 903  QS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
                     L+ + KY    ++++ +   ++F         +  +       +  +   E
Sbjct: 1208 HDEGDGITFLEKVMKYGSKFQESQNSSQVSLFGEASDVQIPEPVVPPCEEWGTMEKLRKE 1267

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            + V+G Y SGHPLD +K  ++     G     ++       + +A ++   Q + ++ G 
Sbjct: 1268 KEVVGIYISGHPLDDFKSEIKSFCNSGIAAVHNMEQYVNKELSIAGVITDVQHRVSKNGK 1327

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
                 +  +    Y+   F
Sbjct: 1328 GWAMFSMEDYTDSYDFRIF 1346


>gi|118497099|ref|YP_898149.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            novicida U112]
 gi|194323396|ref|ZP_03057173.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            novicida FTE]
 gi|208778892|ref|ZP_03246238.1| DNA polymerase III alpha subunit [Francisella novicida FTG]
 gi|118423005|gb|ABK89395.1| DNA polymerase III, alpha subunit [Francisella novicida U112]
 gi|194322251|gb|EDX19732.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            novicida FTE]
 gi|208744692|gb|EDZ90990.1| DNA polymerase III alpha subunit [Francisella novicida FTG]
          Length = 1159

 Score =  969 bits (2505), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1041 (37%), Positives = 593/1041 (56%), Gaps = 41/1041 (3%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
             +L +D +               +  +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVDTEFG-------------ICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
              SWL E+  E +I L GG  G + +A        A++ +    ++FG   Y+ ++ H+ 
Sbjct: 111  PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIINQNIEIFGTNNYI-IEIHKL 169

Query: 191  --GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
                +     + ++ A  + L  VATN ++F+  +DY+ H++   +   T +  + R  +
Sbjct: 170  EYENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP             E
Sbjct: 230  FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVDIPAG----LTE 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVIARMKFSGYFLIVAD 362
            +         GL+ RL +    +     +     Y+ RL  E+++I  M F GYFLIV D
Sbjct: 286  KEYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 346  FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  
Sbjct: 406  CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P      + + +     E   AD  V  ++E +QKLEGL R    HAAGIVI    +S  
Sbjct: 466  PGTTFK-KILHEGEPLYEEMQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----DL 598
             P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +        D+
Sbjct: 525  APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI
Sbjct: 585  ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMG
Sbjct: 645  PTFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASKNG-ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KK  EEM+KQ++ F  GA+K+  I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTA
Sbjct: 705  KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIY 836
            W+K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I 
Sbjct: 765  WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTIL 824

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L AIKG+G    + I+ E      F S+ D C RVD +K+N++ LE+L +AGA+    
Sbjct: 825  LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRF 952
             +R     S++   K A +V +      +++F   +        LE+       N     
Sbjct: 885  KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNIRLAA-MVVSKQQKKTR 1010
             NE++ LG YFSGH +D        +     E+     + GN++R+ A M+    ++KT+
Sbjct: 945  INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004

Query: 1011 KGSRIGWVTFSEPAKEYEANF 1031
             G  +  +   +     +   
Sbjct: 1005 TGRVLYIINIDDEFDRADCLI 1025


>gi|32491128|ref|NP_871382.1| hypothetical protein WGLp379 [Wigglesworthia glossinidia endosymbiont
            of Glossina brevipalpis]
 gi|25166335|dbj|BAC24525.1| dnaE [Wigglesworthia glossinidia endosymbiont of Glossina
            brevipalpis]
          Length = 1159

 Score =  969 bits (2505), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1049 (39%), Positives = 628/1049 (59%), Gaps = 43/1049 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+  F+HL++HS YS+++G   +  I+++      PA+AITD  NL+  ++F   A  
Sbjct: 1    MSKT-YFIHLRIHSDYSIIDGLPKIETIINRAKKLNMPALAITDFTNLYGLIKFYIFAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG          LK    GK     +  I +L S   GY+ LI L+S+ Y   Q
Sbjct: 60   NGIKPIIGSDFY------LKKIICGKE---EISEITILASNNMGYKNLILLISKAYQFGQ 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I L WL +  + GLI+L+GG  G I +    N+ +  +  +  +KK F +R Y+
Sbjct: 111  TNIGPTINLYWLSKYNS-GLIILSGGIYGEIGKYLIKNNLENIKYCINFYKKYFHNRYYL 169

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             + R     +    +  + L+  + +PLVATNN  F+   D+  H++ +++  +T +   
Sbjct: 170  EITRTGKSEEEIYINYALNLSINYNIPLVATNNVRFIFRNDFNVHNIKVSIYQNTTLKNL 229

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             +   T + Y+K   EM  +FSD+PE+LEN++EIA+RC+  ++++   LP F   E    
Sbjct: 230  KKNNYTDNQYMKCEKEMCDLFSDIPESLENSIEIAKRCNVNIELNKYHLPHFSSGEL--- 286

Query: 304  QKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  + NK+  GLE +L      +I K  + + Y  RL  EL VI +MKF  YFLI+
Sbjct: 287  --SPKKYIINKSYLGLEKKLDFLFPNSIEKNKNKKKYETRLKNELKVINKMKFPSYFLII 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FI WAKKNNIPVGPGRGSGAGS+ AY+L ITDIDPL F LLFERFLNP+R+SMPDFDI
Sbjct: 345  MEFISWAKKNNIPVGPGRGSGAGSLVAYSLNITDIDPLSFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD VI +V N YG + VAQIITFG + A++ ++DVGR L  PY  VD++ KLIP
Sbjct: 405  DFCMEKRDLVINHVANIYGKKSVAQIITFGKMTARSVIKDVGRVLGFPYRFVDKISKLIP 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   +  +++  + +  +   +D  V +++++S+ LEGL ++ S HA GIVI  + ++
Sbjct: 465  LDPGVTLE-KSLNTEHQLIKLYSSDEEVKKIIDMSKNLEGLIKNVSKHAGGIVISPKEIT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV---- 596
               P+Y D++++  +TQF+   IEK GL+KFDFLGL+TLT++  ++  + ++  K     
Sbjct: 524  NFTPIYYDIKNNTQITQFDKDDIEKIGLVKFDFLGLRTLTIIDWTVKIINKKREKNNLDL 583

Query: 597  -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             D+S IP +D +++ LL    T+ +FQLES G+R  ++ +QPDC EDII+LV+L+RPGP+
Sbjct: 584  IDISKIPLNDIKSFELLKKSKTISVFQLESKGIRDLIKRLQPDCFEDIISLVALFRPGPL 643

Query: 656  DNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +   + NRK+GKEKI        H L++P+LK T G+I+YQEQVM IAQ+L+GYSL 
Sbjct: 644  KSGMVENFINRKHGKEKIFYPDKNWQHELLEPILKSTYGIILYQEQVMSIAQVLAGYSLG 703

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            EAD+LRRAMGKK  +EM +Q+ RF +GA KNGI K  ++ IF+LL KF+ YGFNKSH+AA
Sbjct: 704  EADILRRAMGKKKVKEMSEQRNRFKNGALKNGIDKIFSMKIFDLLEKFSGYGFNKSHSAA 763

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+KTHY  EF++++M+ +MDN ++I     + +   I+I+ P +NT    F
Sbjct: 764  YALLSYQTLWLKTHYATEFMSSAMSADMDNSDRIISLINECKNIGIKILLPDINTCNYHF 823

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            KV D +I Y L AIKG+G ++ + I  +   +  F  L D C R D KKL R+ +E L+F
Sbjct: 824  KVVDKKIIYGLGAIKGIGLSSIKEIKNQIKKNGNFTDLFDLCLRSDPKKLTRKTIEKLIF 883

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            +GALD     R   +++L    K+AQ   KN+     ++F +   +       E  S   
Sbjct: 884  SGALDKLNKDRSFNVKNLPYAMKFAQQKIKNKKLGQIDMFNYRLKSKYIFKHFE--SSMQ 941

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR----GNNIRLAAMVVS 1003
            +    E E+ +LG Y S HP+  Y   L++         +  I     G N  +  M+ S
Sbjct: 942  NFSILEEERNMLGIYLSNHPMKYY---LQEFIYYSNRNLIKNINKNSSGKNKNICGMISS 998

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++  T+ G  I  +   + +   E   F
Sbjct: 999  VKKIYTKSGDIIISLLLEDSSDILEVILF 1027


>gi|224538019|ref|ZP_03678558.1| hypothetical protein BACCELL_02908 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224520366|gb|EEF89471.1| hypothetical protein BACCELL_02908 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1264

 Score =  969 bits (2504), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1146 (31%), Positives = 575/1146 (50%), Gaps = 134/1146 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNGGP 62

Query: 61   -------KACAAGI-----------------------------QPIIGCQLDIDMQDNLK 84
                   K   AGI                             +PIIGC++ +       
Sbjct: 63   KGEIKDLKKRIAGIESGEIACEDKDAELADCRAKLAEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVSR +         R   + L++   EGL
Sbjct: 120  MDKKEGKPDQSGWHLIVLAKNEKGYHNLIKLVSRAWTEG-YYMRPRTDRNELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +    +  + AE+ +  +K LFG+  Y+ LQRH+              
Sbjct: 178  IVCSACIGGEVPKKILNDQLEDAEEAVRWYKNLFGEDYYLELQRHKATVPRANHEAYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   +++++ A  + + L+ +N+  F++EE  EAHD L+ ++    +    R   T   +
Sbjct: 238  QRANAKLIEFAKKYNIKLICSNDVHFVNEEHAEAHDRLICLSTGKDLDDPKRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--------- 304
            +K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    +         
Sbjct: 298  MKTKAEMNELFADIPEALSNTLEILNKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 357

Query: 305  --------------------------------------KEEENELRNKAVAGLEVRLAQG 326
                                                  K E + L      G ++     
Sbjct: 358  KDLFDEFTQDENGNVVLSEEAAKAKIKRLGGYEKLYRIKLEADYLAKLTFDGAKIFYGD- 416

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                   +++  +RL FEL ++  M F GYFLIV DFI   +   + VGPGRGS AGS  
Sbjct: 417  -----PLSEEVMERLKFELYIMKTMGFPGYFLIVQDFIAAGRNMGVSVGPGRGSAAGSAV 471

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L IT IDP+++ LLFERFLNPDR+S+PD DIDF  D R EV+R+V  KYG E+VA I
Sbjct: 472  AYCLQITKIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTQKYGQEKVAHI 531

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA 504
            IT+G++  K A++DV R  ++P S+ DRL KL+P+  P   ++L  AI      + A  +
Sbjct: 532  ITYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIDYVPELQAAEAS 591

Query: 505  -DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFN 559
             DP V   L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+ 
Sbjct: 592  PDPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYE 651

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTL 618
               IE  GLIK DFLGLKTL++++++++ +   R +++++  +P DD  TY L +   T+
Sbjct: 652  GSVIEDTGLIKMDFLGLKTLSIIKEAVENIRLHRKLELNIDKVPIDDPATYKLYSDGRTI 711

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P++
Sbjct: 712  GTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVM 771

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  K
Sbjct: 772  EKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRK 831

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N
Sbjct: 832  NGHDPKVLEKIWGDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSN 891

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEAS 857
            +  I K   + +   I+++ P VN   + F V       + L A+KGVG     +IME  
Sbjct: 892  ITDITKLMDECKAMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVLNIMEER 951

Query: 858  -ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNI 908
              + PF  + DF  RV+    N++ LE L  AG  D F    R Q           ++ +
Sbjct: 952  EKNGPFKGIFDFVQRVNLTACNKKNLECLALAGGFDEFPELKREQYFAVNSKNEVFMETL 1011

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +Y    + ++     ++F  E         + +    +   R   E+ ++G Y S HPL
Sbjct: 1012 VRYGNRYQADQAAAANSLFGGENVVDIATPEIPEAERWSDLDRLNRERDLVGIYLSAHPL 1071

Query: 969  DVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            D Y  +L+ +      E    A + G  I +  +V S ++  ++ G+  G     + +  
Sbjct: 1072 DEYSVVLQHVCNTRMAELEDKAALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGS 1131

Query: 1027 YEANFF 1032
             E  FF
Sbjct: 1132 AELPFF 1137


>gi|255326240|ref|ZP_05367326.1| DNA polymerase III subunit alpha [Rothia mucilaginosa ATCC 25296]
 gi|255296694|gb|EET76025.1| DNA polymerase III subunit alpha [Rothia mucilaginosa ATCC 25296]
          Length = 1180

 Score =  969 bits (2504), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1066 (34%), Positives = 557/1066 (52%), Gaps = 53/1066 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  F HL VH+ YS+L+GA  L ++          ++A +D   LF A +F ++A A  I
Sbjct: 3    TKEFTHLHVHTEYSMLDGAARLGDLFTHAKELGMKSMATSDHGFLFGAFDFWRQAKAHDI 62

Query: 68   QPIIGCQLDIDM------QDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSR 118
            +PIIG +  +        +  ++  +  +           + +   T EG   L    S 
Sbjct: 63   KPIIGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYTHMTMWAETTEGMHNLFRASSI 122

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L  Q     R+    LQ   ++GLI  TG  SG +           A +    F+ +F
Sbjct: 123  ASLEGQLY-KPRMDREVLQTY-SKGLIATTGCPSGEVQTRLRLGQFDEAVQAASEFRDIF 180

Query: 179  -GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
              D  Y  +  H    +R  +  + +LA    LP VATN+  +  +ED+ AH  L+ V  
Sbjct: 181  GKDNFYCEVMDHGLDIERNVQEDLHRLAKKLNLPFVATNDLHYTRQEDHTAHAALLCVQS 240

Query: 237  STVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
             + ++   R +   D+ YL++  EM ++F D+P A ENT+EIA RC+      A  +P F
Sbjct: 241  GSTLTDPKRFKFDADNFYLRSAEEMYALFGDIPGACENTLEIAERCNVEFNTKANYMPNF 300

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
               E ++    EE+    +   GL  R  QG           R++ ++E+ VI  M F G
Sbjct: 301  PVPEGEN----EESWFVKEVEKGLHYRFPQGV------PDTVRKQAEYEVGVITSMGFPG 350

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD++PL   L+FERFLNPDR+SM
Sbjct: 351  YFLVVADFINWAKRNGIRVGPGRGSGAGSMVAYAMRITDLNPLDHDLIFERFLNPDRVSM 410

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFD+DF   RR EVI YV  KYG E+VAQI+TFG+++AK AL+D  R +  PYS  +RL
Sbjct: 411  PDFDVDFDDRRRGEVIDYVTEKYGEEKVAQIVTFGTIKAKQALKDASRVMDQPYSVGERL 470

Query: 476  CKLIPND-PAHPVSL--------QAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRH 524
             K +P D     ++L        +  A+ +  R       D    ++ E ++ LEGL R 
Sbjct: 471  TKAMPPDVMGKNIALANVYNEEDKRYAEAADLRALIEDPVDKIYGQVFETAKGLEGLKRQ 530

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HAAG+++  + L  ++P+ R       +TQF+    E  GLIK DFLGL+ LT++  
Sbjct: 531  WGVHAAGVIMSSKDLVDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTIISD 590

Query: 585  SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +++ +   RG+ +DL  +  DD E+Y LL    TLG+FQL+   MR  L+ M+P+  E I
Sbjct: 591  AVENIKSNRGIDLDLESLSLDDPESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEFEHI 650

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVMQ 697
             A+++LYRPGP+  ++   Y  RKNGK++I  IHP ++     +L  T G+I+YQEQVM 
Sbjct: 651  SAVLALYRPGPMGANSHTNYALRKNGKQEIEPIHPELEEPLKDILDTTYGLIVYQEQVMA 710

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ ++ Y+L EAD+LRRAMGKK K E+DKQ   F  G   NG S+     ++++L  F+
Sbjct: 711  IAQKVANYTLGEADLLRRAMGKKKKAELDKQYATFHDGMISNGYSEGAIKALWDILLPFS 770

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            DY FNK+H AAY ++SY TA++K HYP E++AA +T   DN +K+  +  + R   I ++
Sbjct: 771  DYAFNKAHTAAYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGITVL 830

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876
             P VN   + F    + I + + AI+ VG      ++ A  +   ++S  DF  +V  + 
Sbjct: 831  APDVNESTLTFAPVGDDIRFGMGAIRNVGANVVEGMIAAREEKGRYESFNDFLKKVPLQV 890

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTF 934
             N+R +ESL+ AGA D  G++R  L    +     A  V++       ++F         
Sbjct: 891  CNKRTIESLIKAGAFDDLGHTRRSLSLIHEAAVDAAVAVKRKEAAGQFDLFGSLGMDDAL 950

Query: 935  SDK--ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---- 988
             D+  +T+      +   +   E+ +LG Y S HPL   +  L         + +     
Sbjct: 951  GDELTVTIPDVPEWDRREKLNFERDMLGLYVSDHPLRGLERALSDAASHSVHDIIGEDSH 1010

Query: 989  TIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAK-EYEANFF 1032
               G  + LA M+    ++  +  G++   V   +P+       FF
Sbjct: 1011 VRDGETVTLAGMLTGVSRRIAKSSGNQYASVELEDPSGATITVMFF 1056


>gi|57505669|ref|ZP_00371595.1| DNA polymerase III, alpha subunit [Campylobacter upsaliensis RM3195]
 gi|57015942|gb|EAL52730.1| DNA polymerase III, alpha subunit [Campylobacter upsaliensis RM3195]
          Length = 1197

 Score =  969 bits (2504), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1060 (35%), Positives = 594/1060 (56%), Gaps = 49/1060 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YS+L+GA  L  +   +      ++A+TD  N+F A++F Q   + G++PI
Sbjct: 4    FTHLHLHTEYSMLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMRSHGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D+L               + L      GY+ L+ L S+ Y+        R
Sbjct: 64   IGLEAYLHNMDDL-----SDKSSRQRFHLCLYAKNEMGYKNLMYLSSQSYIHGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTFKKLFGD 180
            I    L E  +EGLI  +    G ++            F     + A +  L +K++FGD
Sbjct: 118  INKKLL-EKHSEGLICSSACLQGEVNWHLNIHNERNVRFGAKGYEAAREAALWYKRVFGD 176

Query: 181  RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+   ++ ++ATN++ +  +E  EAH+V M +     
Sbjct: 177  DFYFEIMRHGINDQRAIDDDIIRLSKELDIKIIATNDTHYTFKERAEAHEVFMCIGMGKR 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
            ++  DR R +  + Y+K   +M  +F+D+PEA+ NT ++A +C+  L++  P  P F   
Sbjct: 237  LNDPDRMRHSVKEFYVKTSEQMSELFADIPEAISNTQDLANKCNLELKLGDPTPPNFKFT 296

Query: 296  ----------IEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                      + +E  +   E ++    +    GLE RL     +K     +Y+ RL+ E
Sbjct: 297  REYAKEFNVALAQENVEFSFENDDLVFEHLCRKGLEERLKFIDESKH---DEYKARLETE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            + +I  MKFSGY LIV DFI+ AK  NIPVGPGRGS AGS+ AYAL ITDIDPL ++LLF
Sbjct: 354  IKIIKEMKFSGYMLIVHDFIKVAKDKNIPVGPGRGSAAGSLVAYALKITDIDPLPYNLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFC+DRRDEVI YV +KYG ++VAQ+ TF  L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCRDRRDEVINYVIDKYGSDKVAQVSTFNKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L +    VD   KL+P +    +  +A   + + +E     P    L E ++ LEGL R+
Sbjct: 474  LDISLQDVDEFIKLVPEELKITLD-EAYEKEPKIKEFIEKHPKGKELWEYAKSLEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L    P++R  ++D    +TQ++   +E   LIKFDFLGLKTLTL+
Sbjct: 533  AGVHAAGLVISNESLWNKTPLFRQSKNDERHLITQYSKDHLEDVDLIKFDFLGLKTLTLI 592

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R    +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  HNAIKLIKERYNKDIVWESIDVNDSKVYKTIQSGNTLGIFQIESDGMQSLNARLKPENFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            D+IA+++LYRPGP+++ +   + +RK+G +KI+    ++  +L+ T GVI+YQEQVMQI 
Sbjct: 653  DLIAVLALYRPGPMESGMLDDFIDRKHGLKKIIYPFDVLKEVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K+ F +GA K G ++  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMAKLKDEFANGAEKQGYNRAKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAY +I++QTA++KT+YP EF+AA +T E + +E +  + ++ ++ NI+++PP
Sbjct: 773  GFNKSHSAAYGLITFQTAYLKTYYPSEFMAALLTSEQNKIENVAMYIEEMKKMNIKLLPP 832

Query: 820  SVNT-----PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
             +N        +  + G   I Y L AIK VG     +++E    +  F  L DF S++D
Sbjct: 833  RINKAISEFSAIKQEDGTEAIVYGLGAIKSVGGPAIENVLELRSKNGDFKDLHDFLSKID 892

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            + K+NRR LE  + AG+ D FG++R  L  +LD + + A+ + + R N   ++F  E+  
Sbjct: 893  TAKINRRTLEGFIKAGSFDDFGFTRKCLFNNLDTLAESARKMAEVRKNSASSLFGAEELN 952

Query: 934  FSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               KI +    S   +  +   E+ +LG Y SGHPLD +   +  +      +      G
Sbjct: 953  ADTKINIVMDNSEFEAMEKLGYEKEILGIYISGHPLDKFFEEINGIEYTKSIDFENLKGG 1012

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              I     V + +   ++ G R G +   +    +E   F
Sbjct: 1013 GEILSIGKVENFKSLMSKSGKRYGILEILDFYSSFETTIF 1052


>gi|89890044|ref|ZP_01201555.1| DNA polymerase III [Flavobacteria bacterium BBFL7]
 gi|89518317|gb|EAS20973.1| DNA  polymerase III [Flavobacteria bacterium BBFL7]
          Length = 1450

 Score =  969 bits (2504), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1079 (32%), Positives = 551/1079 (51%), Gaps = 73/1079 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            F HL  HS +S+L+   S+ +++   A +   A+A+TD  N+  A  F +   A      
Sbjct: 257  FAHLHSHSQFSILQSTASVQDLVKAAAVNDMSAVAMTDHANMMGAFHFVKAVKAHNASLV 316

Query: 67   -----------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
                       ++P+IGC+  +    N       K+       IVLL     GY  + ++
Sbjct: 317  NDDDNELQKKPLKPVIGCEFFVCEDMN------DKSHKDNGYQIVLLAKNKNGYLNIAKM 370

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S+ Y+ D      RI    +QE   E +I+LTG   G +           AE+ LL +K
Sbjct: 371  SSKAYV-DGFYYVPRIDKKLIQEF-KEDVIVLTGNMYGEVPSKILNIGENQAEEALLWWK 428

Query: 176  KLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            + FGD LYV + RH   D  R ++ ++ L+  H + +VATNN+ ++ +ED  AHD+L+ V
Sbjct: 429  EEFGDDLYVEIMRHGQEDEDRANEVLISLSRKHNVKMVATNNTYYIHKEDANAHDILLCV 488

Query: 235  AHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
                  +                ++Y K+ +EM  +F DLPEA+ N  E+  +       
Sbjct: 489  KDGEKQATPIGRGRGYRYGLPNQEYYYKSATEMKLLFKDLPEAILNISEVLDKIEPFELA 548

Query: 288  HAPILPRFIEKE--------CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
               +LP+F   E         D+ ++ E   LR+    G ++R        G    +  +
Sbjct: 549  RDVLLPKFDIPEQFLDAQDEHDNEKRGENAYLRHLTYEGAKIRY-------GEITPEIEE 601

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RLDFEL  I +  + GYFLI  DFI+ A+  ++ VGPGRGS AGSV AY L IT++DP+ 
Sbjct: 602  RLDFELETIRKTGYPGYFLITWDFIKAARDMDVAVGPGRGSAAGSVVAYCLWITNVDPIH 661

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            + LLFERFLNPDR+SMPD DIDF  + R +V+ YV  KYG  +VAQIIT+G++ AK+++R
Sbjct: 662  YDLLFERFLNPDRVSMPDIDIDFDDENRYKVMDYVIEKYGASQVAQIITYGTMAAKSSIR 721

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS--------------RFREARLAD 505
            D  RAL +P ++ D + KLIP D +    + A+ D+                 R      
Sbjct: 722  DTARALDLPLNEADHIAKLIP-DFSKLKKIFALEDNEVRSKFRGEDADMVEELRGIAAGS 780

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
                  L  ++ LEG  R+   HA G++I   PL+  VP+     SDL VTQF+ + +E 
Sbjct: 781  DLAAETLRQARILEGSVRNTGVHACGVIITPAPLTNFVPVATAKNSDLYVTQFDNEVVES 840

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            AGL+K DFLGLKTL+ ++ ++  + +R     D+  IP DD +TY L     T+GIFQ E
Sbjct: 841  AGLLKMDFLGLKTLSQIKDTVAIIKERHHIDLDIESIPLDDAKTYELFQEGKTVGIFQYE 900

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S+GM++ +  ++P    D+IA+ +LYRPGP++ I  + +RK+G ++I      ++  L E
Sbjct: 901  SAGMQKYMRDLKPTQFADLIAMNALYRPGPLEYIPDFIDRKHGVKEISYDLDGMEEYLSE 960

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+ +YQEQVM ++Q L+ +S  EADVLR+AMGKK    + K K +F+     NG  + 
Sbjct: 961  TYGITVYQEQVMLLSQKLANFSKGEADVLRKAMGKKQMATLQKMKPKFLDNGESNGHDRE 1020

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            I   +++    FA Y FNKSH+  YA I YQTA++K +YP EF+AA+++  M+ ++ + K
Sbjct: 1021 ILEKVWKDWEAFASYAFNKSHSTCYAWIGYQTAYLKANYPAEFMAATLSNNMNQIKDVTK 1080

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
            F  + +   + ++ P VN     F V     + + + A+KG+G      I+E   D P+ 
Sbjct: 1081 FMDECKHMGLPVLGPDVNESNYKFTVNKHGAVRFGMGAVKGLGHGAVMTIIENRKDGPYK 1140

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY-SRMQLLQS-------LDNIQKYAQWV 915
            S+ D   R+D +  N++  E+L  +G  D  G  +R Q           L+ + KYAQ  
Sbjct: 1141 SIFDMAKRIDLRAANKKSFEALALSGGFDGLGGENRAQYFHQSDNGQIFLEQVVKYAQKY 1200

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            ++N  +   ++F         +  L       +  + + E+ V+G Y SGHPLD YK  +
Sbjct: 1201 QENENSAQVSLFGEASDVQIPEPELPICEDWGTMEKLKREKEVVGIYISGHPLDDYKKEM 1260

Query: 976  RKMGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                  G         +   ++    ++   Q + T+     G  T  +    +E   F
Sbjct: 1261 EFFCNTGLSSLKDLHGLVNRDLTFCGVISDVQHRITKTNKGWGMFTVEDYEDSFEFRLF 1319


>gi|254779972|ref|YP_003058079.1| DNA polymerase III subunit alpha [Helicobacter pylori B38]
 gi|254001885|emb|CAX30135.1| DNA polymerase III alpha subunit [Helicobacter pylori B38]
          Length = 1211

 Score =  969 bits (2504), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1078 (34%), Positives = 587/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  ++      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQKEGLDFEDDASYFAHKAREGLKERLILVPKEKH---DQYQERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    R+ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNEVAKRVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L A+KGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMGGGIKEQVVLDMTDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|302526214|ref|ZP_07278556.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4]
 gi|302435109|gb|EFL06925.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4]
          Length = 1174

 Score =  969 bits (2504), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/1070 (32%), Positives = 553/1070 (51%), Gaps = 59/1070 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PSFVHL VH+ YS+L+GA  +  +  + A    PA+ +TD  N++   EF Q +   GI+
Sbjct: 2    PSFVHLHVHTEYSMLDGAAKIGPLFAEAARLGMPAVGMTDHGNMYGGDEFFQTSKKHGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAEGYQR 111
            PIIG +  +  +                           +       + ++   A G + 
Sbjct: 62   PIIGIEAYVAPESRFHKKPVFWGQASQRGSDEFGEGGDVSGGGAYTHMTMVAGNATGLRN 121

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L +L S   +     +  R+    + E   EG+I  TG  SG +         + A +  
Sbjct: 122  LFKLSSLASIQG-YYRKPRMDRELIAE-NAEGIIATTGCPSGEVQTRLRLGQREAAIQAA 179

Query: 172  LTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              +K +F     Y+ L  H    +R     ++++    +LP +ATN+S +++++  + H 
Sbjct: 180  SDYKDIFGAGNFYLELMDHGLPIERSVREGLLEIGKLLDLPPLATNDSHYVTKDQADTHS 239

Query: 230  VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQV 287
             L+ V     ++   R +   D ++LK+  EM   +  ++P A +NT+ IA R      V
Sbjct: 240  ALLCVQAGKTLNDPTRFKFDGDGYFLKSAQEMREYWDKEVPGAADNTLLIAERVESYEDV 299

Query: 288  --HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
              H   +P F   E       E   L ++ ++GLE RL  G         +YR+R ++EL
Sbjct: 300  YAHKDRMPVFDVPEG----HTEATWLHHEVMSGLEHRLPDGV------PDEYRERAEYEL 349

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VI    F GYFLI AD +  A++  I VGPGRGS AGS+ AYAL IT++DP+R  LLFE
Sbjct: 350  EVIVEKGFPGYFLITADLMTHAREAGIRVGPGRGSAAGSLVAYALRITNLDPIRHGLLFE 409

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+SMPD D+DF   RR E+IRY   KYG +R+AQ+ITFG+++ KAA++D  R  
Sbjct: 410  RFLNPERVSMPDIDMDFDDRRRGEMIRYATEKYGSDRIAQVITFGTIKTKAAIKDSARVH 469

Query: 466  --QMPYSQVDRLCKLIPND-PAHPVSLQAI--------ADDSRFREARLADPSVDRLLEI 514
              Q  Y+  DR+ K +P    A  + L  I        A+ +  R     D     + E 
Sbjct: 470  FGQPGYAIADRISKALPPPVAAKDIPLSGIVDAKHERYAEAAEVRALVETDEECKTIFET 529

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++ LEGL R+A  HA  +++   PL   +P++R       +T ++    E  GL+K DFL
Sbjct: 530  ARGLEGLIRNAGVHACAVIMSSEPLLNAIPLWRR-DDGSIITGWDYPSCEAIGLLKMDFL 588

Query: 575  GLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT++  ++D + A RG  +DL  +  DD ET+ LL    +LG+FQL+   MR  L 
Sbjct: 589  GLRNLTVIGDAIDNIQANRGEDIDLDRLAIDDPETFALLVRGDSLGVFQLDGGAMRDLLR 648

Query: 634  GMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKETQG 687
             M+P   EDI+A+ +LYRPGP+       Y +RKN ++ I  IHP ++     +L ET G
Sbjct: 649  RMRPTGFEDIVAVNALYRPGPMAMNTHNNYADRKNKRQAIEPIHPELEEPLREILAETHG 708

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +++YQEQ+MQIAQ ++GYS+  ADVLRRAMGKK KE ++K+ E F +G   NG S     
Sbjct: 709  LVVYQEQIMQIAQKVAGYSMGRADVLRRAMGKKKKEVLEKEFEGFRAGMIDNGFSAEAVQ 768

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             +++ +  FA Y FNKSHAA YA++ Y TA++K +Y  E++AA +T   DN +K   +  
Sbjct: 769  ALWDTILPFAGYAFNKSHAAGYALVGYWTAYLKANYTAEYMAALLTSVGDNKDKSAIYLS 828

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLE 866
            + R+  I+++PP VN   + F    N I + L A++ VG      I++   +   + S  
Sbjct: 829  ECRRLGIKVLPPDVNESALRFAAVGNDIRFGLGAVRNVGANVVESIIKTREEKGKYSSFT 888

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF  + +    N+RV+ESL+ AGA D  G++R+ ++Q  ++  +    +++       ++
Sbjct: 889  DFLDKSELVACNKRVIESLIKAGAFDSMGHTRLSMIQVHEDAVEAVVPLKRQEAMGQFDL 948

Query: 927  FAHE-KGTFSDKITLEKF--SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            F  E +   S  +   KF             E+ +LG Y S HPLD  + +LRK   +  
Sbjct: 949  FGGESEEPASSPLAHVKFTAEEWPRKQLLAQERDMLGLYVSAHPLDGAEGVLRKHAPRPI 1008

Query: 984  EESVAT-IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +    +   + +A ++ S +++  +KG      T  +     E  FF
Sbjct: 1009 AAIIDNPPKEGELVVAGLITSLERRVNKKGEPWAICTVEDLDASLEVLFF 1058


>gi|313204257|ref|YP_004042914.1| DNA polymerase iii, alpha subunit [Paludibacter propionicigenes WB4]
 gi|312443573|gb|ADQ79929.1| DNA polymerase III, alpha subunit [Paludibacter propionicigenes WB4]
          Length = 1265

 Score =  968 bits (2503), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1131 (33%), Positives = 590/1131 (52%), Gaps = 119/1131 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66
            SFVHL VHS YS+L+G  +++ ++DK +     A+A+TD  N+F   EF   A       
Sbjct: 3    SFVHLHVHSHYSVLDGMSTISGLVDKASKSGMHAVALTDHGNMFGVKEFFNYAKKKNGKV 62

Query: 67   -----------------------------------IQPIIGCQLDIDMQDNLKMTNQGKT 91
                                                +PIIGC+  +  +  L       T
Sbjct: 63   KGQIADLQKQLKAEGLTEEEKTSILEQIEEAKHKIFKPIIGCEAYVARRGRLSKEG---T 119

Query: 92   PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151
               +   +VLL    +GYQ L +LVS  ++        RI    L++  +EGLI  +   
Sbjct: 120  EDRSGYHLVLLAKNKKGYQNLCKLVSMSWIEGM-YYRPRIDHDILEKY-SEGLIASSACL 177

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG---------YDRY--RESQV 200
             G I +     +   AEK ++ +KK+FGD  Y+ LQRH+          +D+   +  ++
Sbjct: 178  GGEIHKKVESGNMDEAEKSVMWYKKVFGDDFYIELQRHKTDKPNADYSTFDKQMRQNEEL 237

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
            ++LA      +VATN+  F+ EE  EAH+ L+ ++    +   +R R T   +LK+  +M
Sbjct: 238  IKLARKTNTKIVATNDVHFVEEEHGEAHERLICLSTGKDLDDPNRMRYTKQEWLKSPEQM 297

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE-------------- 306
              IF+D+PEAL NT+EIA +  F       ++P F   E    +++              
Sbjct: 298  WQIFADIPEALNNTLEIAEKVEFFDIDSNAMMPVFPIPESFGTEEQYRAKFSEEMLRSEF 357

Query: 307  ------------------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                              E + L   A  G  VR      A        ++R+DFEL V+
Sbjct: 358  GEGFDRLGGYEKAVRVKLEADYLTKLAYEGAAVRYGSELTADQ------KERIDFELEVM 411

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
              M F GYFLIV DFI+ A+   + VGPGRGS AGSV AY L ITDIDPL++ LLFERFL
Sbjct: 412  KTMGFPGYFLIVQDFIRAARDMKVSVGPGRGSAAGSVVAYCLRITDIDPLKYDLLFERFL 471

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NPDR+SMPD DIDF  D R +V+R+V  KYG ERVA IIT+G++  K++++DV R  ++P
Sbjct: 472  NPDRISMPDIDIDFDDDGRGQVLRWVTEKYGKERVAHIITYGTMATKSSIKDVARVQRLP 531

Query: 469  YSQVDRLCKLIPNDPAHPVSLQA--------IADDSRFREARL-ADPSVDRLLEISQKLE 519
             S+ DRL KLIP+        +A        +      + AR  +D ++   L  ++ LE
Sbjct: 532  LSEADRLTKLIPDKFPEGADGKAPKITISNCLKYVPEMQTARNSSDLNLANTLRYAEMLE 591

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            G  R    HA G++IG   L+ LVP+     ++   ++ VTQ+    IE+ GLIK DFLG
Sbjct: 592  GTVRQTGVHACGVIIGADDLTNLVPLSTAMDKETNEEMLVTQYEGSVIEEIGLIKMDFLG 651

Query: 576  LKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            LKTL++++++L  + + +G+ +D+  IP DD +TY L +   T+G FQ ES+GM++ L  
Sbjct: 652  LKTLSIIKEALSNIKKSKGIDLDIDSIPIDDCKTYELFSKGLTVGTFQFESAGMQKHLIN 711

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
            +QP   ED+IA+ +LYRPGP+  I  + NRK+G+EKI    P+++  LK+T G+ +YQEQ
Sbjct: 712  LQPTQFEDLIAMNALYRPGPMQYIPQFVNRKHGREKIEYPFPIMENRLKDTYGITVYQEQ 771

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI-SKTIAVNIFELL 753
            VM +++ L+G++  ++D LR+AMGKK+ ++M+  K +F+ G  KNG   K     I+   
Sbjct: 772  VMLLSRDLAGFTRGQSDELRKAMGKKLIDKMEALKVKFMDGCEKNGFGPKAKLEQIWSDW 831

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
            A+FA Y FNKSHA  Y+ I+YQTA++K HYP EF+AA++T   D++ ++ KF  + +   
Sbjct: 832  AEFAKYAFNKSHATCYSWIAYQTAYLKAHYPAEFMAANLTRNKDDITEVGKFMDECKNLG 891

Query: 814  IQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871
            + ++ P VN   + F V  +    + L AIKGVG      I+    A+  + S+ +   R
Sbjct: 892  MNVLGPDVNESDLTFTVNADGNVRFGLGAIKGVGEGAVEAIVNERNANGKYTSMFNLIER 951

Query: 872  VDSKKLNRRVLESLVFAGALDCFG-YSRMQLL-------QSLDNIQKYAQWVEKNRTNKH 923
            V+    N+R +ESL  +GA D F    R QL        Q L++I +Y    + +     
Sbjct: 952  VNLTACNKRAMESLALSGAFDSFSDVHREQLFVENSKGEQVLESILRYGNKYQTDLAMTK 1011

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
             ++F         K  +      +   +   E+ ++G Y S HPLD Y+  +  +     
Sbjct: 1012 NSLFGGLDSVEITKPEIPYAPEWSPLEKLNKERDLIGMYLSAHPLDEYEFEINHICNATT 1071

Query: 984  EES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   +++++G  +++  MV + +   ++ G+  G  T  + A  +E   F
Sbjct: 1072 VDLKDLSSLQGKGLKIGGMVTNFRHGTSKAGNPYGIFTLEDYAGAFEFALF 1122


>gi|317011593|gb|ADU85340.1| DNA polymerase III subunit alpha [Helicobacter pylori SouthAfrica7]
          Length = 1211

 Score =  968 bits (2502), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1078 (34%), Positives = 587/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++K+ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKKTKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----ASKETKQRFHLCLFAKNQEGYENLMYLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRRYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL      K    + Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLDFEDDASYFAHKAREGLKERLILVPKEKH---EQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNDIAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHQISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L AIKGVG+   ++I+E     
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGSEPIKNIIEERTKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + +LEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKNLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F   +    +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMESETREQVILDMVDLGEHDAKTLLEYEYETLGIHVSGNPLDEFKEEVK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|328676562|gb|AEB27432.1| DNA polymerase III alpha subunit [Francisella cf. novicida Fx1]
          Length = 1159

 Score =  968 bits (2502), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1041 (37%), Positives = 593/1041 (56%), Gaps = 41/1041 (3%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
             +L +D +               +  +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVDTEFG-------------ICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
              SWL E+  E +I L GG  G + +A        A++ +    ++FG   Y+ ++ H+ 
Sbjct: 111  PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIINQNIEIFGTNNYI-IEIHKL 169

Query: 191  --GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
                +     + ++ A  + L  VATN ++F+  +DY+ H++   +   T +  + R  +
Sbjct: 170  EYENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP             E
Sbjct: 230  FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVDIPAG----LTE 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVIARMKFSGYFLIVAD 362
            +         GL+ RL +    +     +     Y+ R+  E+++I  M F GYFLIV D
Sbjct: 286  KEYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRVQREIDIICDMGFPGYFLIVED 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 346  FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  
Sbjct: 406  CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P      + + +     E   AD  V  ++E +QKLEGL R    HAAGIVI    +S  
Sbjct: 466  PGTTFK-KILHEGEPLYEEMQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----DL 598
             P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +        D+
Sbjct: 525  APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINTKRPADQKPLDI 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI
Sbjct: 585  ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMG
Sbjct: 645  PTFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASKNG-ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KK  EEM+KQ++ F  GA+K+  I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTA
Sbjct: 705  KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIY 836
            W+K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I 
Sbjct: 765  WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTIL 824

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L AIKG+G    + I+ E      F S+ D C RVD +K+N++ LE+L +AGA+    
Sbjct: 825  LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRF 952
             +R     S++   K A +V +      +++F   +        LE+       N     
Sbjct: 885  KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNIRLAA-MVVSKQQKKTR 1010
             NE++ LG YFSGH +D        +     E+     + GN++R+ A M+    ++KT+
Sbjct: 945  INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004

Query: 1011 KGSRIGWVTFSEPAKEYEANF 1031
             G  +  +   +     +   
Sbjct: 1005 TGRVLYIINIDDEFDRADCLI 1025


>gi|15612418|ref|NP_224071.1| DNA polymerase III subunit alpha [Helicobacter pylori J99]
 gi|11132624|sp|Q9ZJF9|DPO3A_HELPJ RecName: Full=DNA polymerase III subunit alpha
 gi|4155965|gb|AAD06929.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
          Length = 1211

 Score =  968 bits (2502), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1078 (34%), Positives = 588/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A++    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL  RL      K    + Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLSFEDDASYFAHKAREGLRERLILVPEEKH---EQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNEVAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L A+KGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F   +G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMEGGIKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|72160451|ref|YP_288108.1| DNA polymerase III subunit alpha [Thermobifida fusca YX]
 gi|71914183|gb|AAZ54085.1| DNA polymerase III, alpha subunit [Thermobifida fusca YX]
          Length = 1188

 Score =  968 bits (2502), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/1079 (32%), Positives = 566/1079 (52%), Gaps = 63/1079 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL VH+ YS+L+GA  L  + ++ A    PA+A+TD  N+F + EF Q +  
Sbjct: 1    MTNDP-FVHLHVHTEYSMLDGAAKLKPLFEEAARLGMPAVAMTDHGNMFGSYEFWQTSKE 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------------QGKTPFPTVPSIVLLVSTAEG 108
            +G++PIIG +  +  +                       +  +       + +    A+G
Sbjct: 60   SGVKPIIGIEAYVAPESRFHKQRVFWGTGKTGDEAAEGGKDVSGGGRYLHLTMWARNAKG 119

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
             + L  L S            R+ L  + +  +EG+++ TG  SG +         + A 
Sbjct: 120  LRNLFRLSSLASFEG-YYTKPRMDLELMAQY-SEGIMVTTGCPSGGVQTRLRLGQEREAI 177

Query: 169  KRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +     + +F  D ++V L  H    +R   S ++ +A    L  V TN+S +++E+   
Sbjct: 178  EYAGKLRDIFGRDSVFVELMDHGLDIEREVRSGLLTVAKKLGLRPVVTNDSHYVTEDQAA 237

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSI--FSDLPEALENTVEIARRCSF 283
            AHD L+AV     +    R R     +YLK+  EM S+  F +  E   NT+ IA +   
Sbjct: 238  AHDALLAVGVGKNLDDPTRFRFNGTGYYLKSAEEMRSLNTFDEWLEGCRNTLWIAEQVED 297

Query: 284  ----ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
                 +     ++P+F   E +     + + LR +    +  R   G       +++ R+
Sbjct: 298  GAYDDVFRPRDLMPKFPVPEGE----TQASWLRKEIERCIPNRYPNGP------SREVRE 347

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            R++ EL++I RM F  YFL+VAD  Q+A+++ I +GPGRGS  GS+ AY L ITD+DPL 
Sbjct: 348  RIEHELSIIERMGFPAYFLVVADICQYARRSGIALGPGRGSATGSMVAYVLGITDLDPLE 407

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
             SLLFERFLNP+R+SMPD D+DF + +R ++IRYV  +YG +RVAQI+TFG+++AKAA++
Sbjct: 408  HSLLFERFLNPERVSMPDIDLDFDERKRGDMIRYVTERYGEDRVAQILTFGTIKAKAAIK 467

Query: 460  DVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDR 510
            D  R L  PY+  D++ K  P       + L A+ D+S          R+   ++P V +
Sbjct: 468  DATRILGYPYALGDKITKAFPPAVGGKEIPLSAVFDESHPRYNEAAELRQLIESNPDVRK 527

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            + E +  LEGL R    HAAG+++   PL  ++P+++       +T F     E+ GL+K
Sbjct: 528  VYETASGLEGLTRGTGVHAAGVILSAEPLLDVIPLHKRETDGAIITGFPYPQCEEMGLLK 587

Query: 571  FDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             DFLGL+ LT++  ++  +      +++LS +P D+ +TY LL+   TLG+FQL+   MR
Sbjct: 588  MDFLGLRNLTVIDDAIQNIKANEGKEINLSALPLDNKKTYELLSRGDTLGVFQLDGGPMR 647

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLK 683
              L+ M+P    DI A+++LYRPGP+  +    Y +R NG+++I  IHP +    DP+L 
Sbjct: 648  ALLKRMEPKKFGDIAAVLALYRPGPMAANAHNDYADRSNGRQEITPIHPELKEALDPILA 707

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            E+  +I+YQEQVM IAQ L+GY+L  AD+LRRAMGKK KE ++K+  +F  G    G SK
Sbjct: 708  ESFHLIVYQEQVMAIAQQLAGYTLGGADLLRRAMGKKKKEALEKEYTKFSEGMLSRGFSK 767

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                 +++++  F+ Y FNKSH A Y +ISY TA++K ++P  ++AA +T   D+ +K+ 
Sbjct: 768  EAMQALWDVMLPFSGYAFNKSHTAGYGMISYWTAYLKANHPASYMAALLTSVADDKDKMA 827

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPF 862
             +  + R+  I+++PP VN   + F    N I + L A++ VG      I++   +   F
Sbjct: 828  VYLAECRKMGIRVLPPDVNESGLQFTPVGNDIRFGLGAVRNVGANVVESILKTREEKGKF 887

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             S  DF S+++    N+RV+ESL+ AGA D  G+SR+ L +  +         +K   + 
Sbjct: 888  TSFVDFLSKIELTVCNKRVIESLIKAGAFDSLGHSRLDLYRHHEAAVDAVLSSKKQEAHG 947

Query: 923  HENIFAHEKGTFSDKITLEKFS------VENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
              ++F         +     FS        +   +   E+ +LG Y S HPL   + IL 
Sbjct: 948  QFDLFGGGDEEDGGESAPLGFSINWTGEEWDRKTKLAFEREMLGLYVSSHPLAGAERILA 1007

Query: 977  KMGIKGYEESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +       + V       + +R+A ++   +++  + G++    T  +     EA FFP
Sbjct: 1008 RASDAPLLDVVNGERRNNDEVRIAGLISKVEKRINKAGNQWAIATVEDLDASIEALFFP 1066


>gi|62184719|ref|YP_219504.1| DNA polymerase III subunit alpha [Chlamydophila abortus S26/3]
 gi|62147786|emb|CAH63532.1| putative DNA polymerase III alpha subunit [Chlamydophila abortus
            S26/3]
          Length = 1248

 Score =  967 bits (2501), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1077 (33%), Positives = 567/1077 (52%), Gaps = 60/1077 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+ + + K    Q P++A+TD  NL+ A+EF ++     I+P
Sbjct: 8    TWIPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECQQNDIKP 67

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +          + K+       ++LL     GY+ L  L S  +         
Sbjct: 68   IIGCEVYVAPSSRFDKKKEKKSRV--AHHLILLCKNELGYRNLCLLSSLAFTEG-FYYFP 124

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +   EGLI L+   S  + +A    S +  EK L  ++ LFG+  Y  +Q H
Sbjct: 125  RIDRELLSQ-HAEGLICLSACLSSSVAQAALE-SEEALEKDLRWYQNLFGEDFYSEIQLH 182

Query: 190  RGYDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +  +                            V+  +    +  VATN+  ++  +D+ A
Sbjct: 183  KMSEEKIASLGEEWLKHEYYQFIDSQTKVNQAVLDASKRLGIRSVATNDIHYIHADDWLA 242

Query: 228  HDVLMAVAHSTV----------VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+ V                + K +   + ++Y K+  EM  +F+D PE + NT+E+
Sbjct: 243  HEILLNVQLGETIRIAKQNTYIPNPKRKTFRSREYYFKSPEEMARLFADHPETITNTLEV 302

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQGAI- 328
            A +C+  L + +   P ++ +     Q   E E        LR     GL  +     + 
Sbjct: 303  ADKCNLHLNLSSKHYPIYVPEFLKSKQNYTEEERYAASAAFLRELCEKGLSTKYTPEKLA 362

Query: 329  ------AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                        +  ++RL+ E+++I       Y LIV D I WAK N IPVGPGRGSGA
Sbjct: 363  HISKKFPDRDPLELVKERLEMEMSIIIPKGMCDYLLIVWDIIYWAKDNGIPVGPGRGSGA 422

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + 
Sbjct: 423  GSVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDN 482

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            VAQIITFG+++AK A++DVGR L +P S+V+ + K IP    +    +A+  D    E  
Sbjct: 483  VAQIITFGTMKAKMAVKDVGRTLDVPLSKVNHIAKHIPE--LNTTLAKALETDPHLNELY 540

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
              D    ++++++ +LEG  R+   HAAG++I    L+  +P+     S +  TQF+MK 
Sbjct: 541  TNDAEAAQVIDMAMRLEGSIRNTGVHAAGVIICGDRLTNHIPICISKDSTMITTQFSMKP 600

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            +E  G++K DFLGLKTLT +  ++  +  + G  ++++ +P DD  T+ LL    T+GIF
Sbjct: 601  VESVGMLKVDFLGLKTLTSIHIAMRAIEKKTGKLLEMASLPLDDKTTFALLHQGKTMGIF 660

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            Q+ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++ +
Sbjct: 661  QMESKGMQELAKNLRPDSFEEIIAIGALYRPGPMDMIPSFINRKHGKEIIEYDHPLMESI 720

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  ++M K++ RF   A KNGI
Sbjct: 721  LKETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDIDQMLKERTRFCERARKNGI 780

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
               +A  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK
Sbjct: 781  DAELATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTSDSDDIEK 840

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK 860
            I K   +A   +I I+PP +N    DF   D  I +++ AI+G+G      I+E      
Sbjct: 841  IGKLIHEAHSMDICILPPDINESGTDFVATDKGIRFAMGAIRGIGKGLVESIIEEREKHG 900

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            P+ S+ DF  R D KK+ ++  E+L+ AG  D F   R     +L+++       +K   
Sbjct: 901  PYQSIRDFIQRSDLKKVTKKHTENLIDAGCFDVFEPDRDVAQATLESLYDSISKEKKEAA 960

Query: 921  NKHENIFAHEKGTFSDKITLEKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                  F+         I L   +     +     + E+ +LG Y + HP+D  K IL +
Sbjct: 961  TGVMTFFSLNAMHQKHPIPLTPATNVVRRSKKDILKKEKELLGIYLTEHPMDAVKDILPR 1020

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033
            + +    E      G  IR   ++     + + KG R    +  ++    YE   +P
Sbjct: 1021 LSVVSPGEFANLPHGAVIRTIFIIDKVTTRISSKGQRKFALLRVNDGVDSYELPIWP 1077


>gi|109946747|ref|YP_663975.1| DNA polymerase III subunit alpha [Helicobacter acinonychis str.
            Sheeba]
 gi|109713968|emb|CAJ98976.1| DNA polymerase III, alpha chain [Helicobacter acinonychis str.
            Sheeba]
          Length = 1209

 Score =  967 bits (2501), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1076 (34%), Positives = 592/1076 (55%), Gaps = 58/1076 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKETKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSMTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMYLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNSERNRRYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ + R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDQGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL      K    + YR+RL+
Sbjct: 294  NPPTPPSFKFTKTYAQNEGLDFEDDASYFAHKAREGLKERLILVPKEKH---EQYRERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKERGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++ +  ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNDTARQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHQIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A+N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMAGNKAKFVEGAKNLGHDGQKAINL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRI-------YYSLAAIKGVGTTTARHIMEASADKPF 862
            R   I++MPP +N+   DF V + +         + L AIKGVG+   ++I+E      +
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNEKVEKKIVFGLGAIKGVGSEPIKNIIEERTKGDY 890

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             +LEDF SR+D  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K     
Sbjct: 891  KNLEDFISRMDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDVGRAKDKANEMM 950

Query: 923  H--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                ++F   +    +++ L+       ++ +  E E   LG + SG+PLD +K  ++  
Sbjct: 951  QGGNSLFGAMESETREQVILDMADLGEHDAKMLLEYEYETLGIHVSGNPLDEFKEEIKGF 1010

Query: 979  -GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
              +    +      G+   L   ++  ++K  ++ G   G     +   ++E  FF
Sbjct: 1011 KNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTAEILDRYGKFELMFF 1066


>gi|118475097|ref|YP_892396.1| DNA polymerase III subunit alpha [Campylobacter fetus subsp. fetus
            82-40]
 gi|118414323|gb|ABK82743.1| DNA polymerase III alpha subunit [Campylobacter fetus subsp. fetus
            82-40]
          Length = 1331

 Score =  967 bits (2501), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1067 (37%), Positives = 605/1067 (56%), Gaps = 54/1067 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL +H+ YSLL+GA  +  +  ++      + AITD  N++ AL+F +   A GI+P
Sbjct: 3    DFTHLHLHTEYSLLDGANKIKVLAKRLKELNIKSCAITDHGNMYGALDFYKTMKAEGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  I   +++      +        + L      GYQ L+ L S  Y+        
Sbjct: 63   IIGLEAYIHNHEDISNKESRQR-----FHLCLFAKNEVGYQNLMYLSSMSYIKGYYYH-P 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRA---------FFFNSSQVAEKRLLTFKKLFGD 180
            RI    L+E  +EGL+  +   +G ++                 + A++  L +K +FGD
Sbjct: 117  RINKKLLRE-HSEGLVCSSACLAGEVNFHLNLSDRNLKRGAGGYESAKRVALEYKDIFGD 175

Query: 181  RLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ + RH   D+ R +  +++L+    + L+ATN++ + +++   A  + + ++ +  
Sbjct: 176  DFYLEIMRHGIGDQQRIDDDIIRLSMETGIKLIATNDAHYTTKDSAVAQKIFVYISANKN 235

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---- 295
               K R +V  + Y K+  EM +IF+D+PE +ENT EI  +C+  +++     P F    
Sbjct: 236  FDDKVREQVLSEFYAKSADEMSAIFADMPEVIENTNEIVEKCNLEIKLGDATPPNFKFTQ 295

Query: 296  -IEKECDDIQKEEENE---------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
               KE   I    +NE            +   GLE RL     +K    Q Y+ RLD E+
Sbjct: 296  EYAKERGIILPHPQNEYDLENDSFLFEYECKQGLEKRLEFIDPSKH---QIYKDRLDLEI 352

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            N I  MKF GY LIVADFI  AK+  IPVGPGRGS AGS+ AYAL ITDIDPL ++LLFE
Sbjct: 353  NTINNMKFPGYMLIVADFINEAKRRGIPVGPGRGSAAGSLVAYALRITDIDPLPYNLLFE 412

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+SMPD D+DFCQ+RR EVI YV  KYG   VAQ+ TFG L AK  +RDV R +
Sbjct: 413  RFLNPERISMPDIDVDFCQNRRGEVIDYVIEKYGEYNVAQVATFGKLLAKGVIRDVARVM 472

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQ----------AIADDSRFREARLADPSVDRLLEIS 515
             MPYS+ D + KLIP++    +             A   + +  E    +    ++ E S
Sbjct: 473  GMPYSEADAMAKLIPDELGITLKAHKNKKGDMEDGAFEKEPKIGELIAKNDLAKQVWEYS 532

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR--DVRSDLPVTQFNMKWIEKAGLIKFDF 573
             +LEGL R+   HAAGIVI +  L +  P+++  +  +   VTQ+   ++E   LIKFDF
Sbjct: 533  CELEGLNRNPGMHAAGIVISNEELWKKAPLWKQSNAEAGHYVTQYTKDYLEDVDLIKFDF 592

Query: 574  LGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGLKTLT++  +   + +R  V +    I F+D +TY  + +  TLGIFQ+ESSGM+   
Sbjct: 593  LGLKTLTVIDNAKKLIKERFGVDILWEKIDFNDQKTYETIQSGNTLGIFQIESSGMQSLA 652

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
              ++PDC EDIIA+++LYRPGP+++ +V  + + K+GK+KI      + P+L+ T GVI+
Sbjct: 653  AKLRPDCFEDIIAMIALYRPGPLNSGMVDDFIDIKHGKKKIEYAFAALKPILEPTYGVIV 712

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVMQ+ Q + G+SL  AD++RRAM KK ++EM   K +++ GA +NG  +  A  +F
Sbjct: 713  YQEQVMQVVQTVGGFSLGGADLVRRAMSKKKEDEMLHLKTQYLEGAKRNGFDEGKADALF 772

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            EL+ KFA+YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +N++KI K+  + +
Sbjct: 773  ELIMKFAEYGFNKSHSAAYALITFQTAYLKTYYPAEFMAALLTSEENNIDKIIKYIDEIK 832

Query: 811  QFNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            + NI+++PP+VN    +F V    G + I Y +AAIKGVG      I++A  D PF+S++
Sbjct: 833  RLNIKLLPPNVNYSVREFSVIQKDGSDSIIYGMAAIKGVGVGAVEDIIKAREDGPFESVD 892

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
             F S+ D   +NRRV ESL+ +GA D FG++R  L+ +L+ I + ++ +   + N   ++
Sbjct: 893  SFISKTDCTTVNRRVFESLIKSGAFDDFGFTRKMLIHNLETIIENSKRISDIKKNATNSL 952

Query: 927  FAHEKGTFSDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            F+ +       + L     E +     + EQ +LG Y SGHPLD Y+  + K+      E
Sbjct: 953  FSDDDSMSEISVDLVNIKDEFDKKEILKFEQEILGVYVSGHPLDEYRDKIDKINYTVSSE 1012

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                  G+ I +   +     K T+ G ++  +   +     EA  F
Sbjct: 1013 FENVEDGSEILVVGKIEDTTTKITKTGKKMAIINILDIHGNIEATAF 1059



 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 5/51 (9%), Positives = 17/51 (33%)

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++     + + I +   +     + T+ G  +  +   + +   E   F
Sbjct: 1134 TIKDIPNLTKESEILIIGKMSHINIRTTKSGMEMAILNIVDISGNSEMIAF 1184


>gi|217031799|ref|ZP_03437302.1| hypothetical protein HPB128_199g7 [Helicobacter pylori B128]
 gi|298735572|ref|YP_003728093.1| DNA polymerase III subunit alpha [Helicobacter pylori B8]
 gi|216946451|gb|EEC25053.1| hypothetical protein HPB128_199g7 [Helicobacter pylori B128]
 gi|298354757|emb|CBI65629.1| DNA polymerase III subunit alpha [Helicobacter pylori B8]
          Length = 1211

 Score =  967 bits (2500), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1078 (34%), Positives = 589/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  ++      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEK----------ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                            E     +++ +   +KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKSYAKEEGLNFEDDASYFAHKAREGLKERLILVPKEKH---DQYQERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++ +  ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNDTARQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYALKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L AIKGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F   +G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMEGGIKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|254372464|ref|ZP_04987953.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            novicida GA99-3549]
 gi|151570191|gb|EDN35845.1| DNA polymerase III alpha subunit [Francisella novicida GA99-3549]
          Length = 1159

 Score =  967 bits (2500), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1041 (37%), Positives = 593/1041 (56%), Gaps = 41/1041 (3%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
             +L +D +               +  +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVDTEFG-------------ICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
              SWL E+  E +I L GG  G + +A        A++ +    ++FG   Y+ ++ H+ 
Sbjct: 111  PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIINQNIEIFGTNNYI-IEIHKL 169

Query: 191  --GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
                +     + ++ A  + L  VATN ++F+  +DY+ H++   +   T +  + R  +
Sbjct: 170  EYENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP             E
Sbjct: 230  FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVDIPAG----LTE 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVIARMKFSGYFLIVAD 362
            +         GL+ RL +    +     +     Y+ RL  E+++I  M F GYFLIV D
Sbjct: 286  KEYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 346  FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  
Sbjct: 406  CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P      + + +     E   AD  V  ++E +QKLEGL R    HAAGIVI    +S  
Sbjct: 466  PGTTFK-KILHEGEPLYEEMQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----DL 598
             P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +        D+
Sbjct: 525  APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKRLDI 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI
Sbjct: 585  ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMG
Sbjct: 645  PTFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASKNG-ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KK  EEM+KQ++ F  GA+K+  I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTA
Sbjct: 705  KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIY 836
            W+K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I 
Sbjct: 765  WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTIL 824

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L AIKG+G    + I+ E      F S+ D C RVD +K+N++ LE+L +AGA+    
Sbjct: 825  LGLGAIKGLGGEAIKSILTERDIAGEFCSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRF 952
             +R     S++   K A +V +      +++F   +        LE+       N     
Sbjct: 885  KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNIRLAA-MVVSKQQKKTR 1010
             NE++ LG YFSGH +D        +     E+     + GN++R+ A M+    ++KT+
Sbjct: 945  INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004

Query: 1011 KGSRIGWVTFSEPAKEYEANF 1031
             G  +  +   +     +   
Sbjct: 1005 TGRVLYIINIDDEFDRADCLI 1025


>gi|308064219|gb|ADO06106.1| DNA polymerase III subunit alpha [Helicobacter pylori Sat464]
          Length = 1211

 Score =  967 bits (2500), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1078 (34%), Positives = 586/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTYNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFEDDASYFAYKAREGLKERLFLVPKEKH---DQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSVAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L AIKGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMTDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|288800747|ref|ZP_06406204.1| DNA polymerase III, alpha subunit [Prevotella sp. oral taxon 299 str.
            F0039]
 gi|288332208|gb|EFC70689.1| DNA polymerase III, alpha subunit [Prevotella sp. oral taxon 299 str.
            F0039]
          Length = 1236

 Score =  967 bits (2499), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1117 (32%), Positives = 573/1117 (51%), Gaps = 104/1117 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62
             FVHL VH+ YS+L+G  ++  ++DK   +    +AITD  N+F   EF           
Sbjct: 3    DFVHLHVHTYYSILDGQSNIQKLVDKAINNGMRGLAITDHGNMFGIKEFYNYCNKVNGKR 62

Query: 63   CAAGI---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
               G+   +PI+GC++ +    N K +   +        +++L    +GY+ LI+LVSR 
Sbjct: 63   KEEGLPPFKPILGCEMYVAR--NKKESKIKENGDMGGKHLIVLAKNFQGYKNLIKLVSRS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++ D      R     L+    EGLI+ +   +G +         + A +    FK++FG
Sbjct: 121  WV-DGFYMRPRTDHEDLERYH-EGLIVCSACIAGEVPSKVLKGDYEGAREAARWFKRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     ++++A   ++ +V TN+  F+ ++D E
Sbjct: 179  DDYYLELQRHEVKDPSQRANRQTYPLQQKANKALLEIAKELDIKVVCTNDVHFIEKDDAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++ +  ++  +R   T   + K++ EM  +F DLPEA++NT EI  +      
Sbjct: 239  AHDHLICLSTNKDLNDPNRLLYTKQEWFKSKEEMNEVFGDLPEAMQNTCEILDKIELYSI 298

Query: 287  VHAPILPRFIEKEC-------------DDIQKE--------------------------- 306
             HAPI+P +   E              +D+ KE                           
Sbjct: 299  DHAPIMPFYPIPEDFGTEEDLRSSISEEDLFKEFTSDENGQNPLPLEEGKKKIEKLGGIE 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L   A  G +    +          +  +R+ FEL+++  M F GYFLI
Sbjct: 359  KLYRVKFEADYLGKLAYDGAKKLYGE------PLTDEVDERIKFELHIMKTMGFPGYFLI 412

Query: 360  VADFIQWAK-KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A+ +  + VGPGRGS AGSV AY L IT IDP+++ LLFERFLNPDR+S+PD 
Sbjct: 413  VQDFINTARNELGVMVGPGRGSAAGSVVAYCLGITKIDPIKYDLLFERFLNPDRISLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R  V+ +V+NKYGHE  A IIT+G++  K +L+DV R  ++P  Q + LCK 
Sbjct: 473  DTDFDDDGRGLVLEWVENKYGHENCAHIITYGTMATKNSLKDVARVERVPLDQANYLCKS 532

Query: 479  IPNDPAHPVSLQ---AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP+   + + +    A+A     ++A  + D  V   ++ ++KLEG  R    HA G +I
Sbjct: 533  IPDKLPNDLKMNLTNAVASIPELKQAEESPDEKVRNTIKYAKKLEGTVRGTGVHACGFII 592

Query: 535  GDRPLSQLVPMY-----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+S  VP+       D    L  TQ++   IE  GLIK DFLGLKTL++L++++D +
Sbjct: 593  CRDPISDWVPISIAEDKTDPGHKLRCTQYDGHVIEDTGLIKMDFLGLKTLSILKEAVDNI 652

Query: 590  A-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
               +G+K+DL  IP DD  TY L +   T+G FQ ES GM++ L  +QP   ED+IA+ +
Sbjct: 653  QFTKGIKIDLDNIPIDDALTYELYSAGKTIGTFQFESPGMQKHLRSLQPTVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK    KI    P ++  LK+T G+ +YQEQVM +A+ L+G++  
Sbjct: 713  LYRPGPMDYIPDFIERKKDPSKIQYDIPCMEKYLKDTYGITVYQEQVMLLARQLAGFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            ++D LR+AMGKK+  +MDK +  F  G  KNG  + +   I+E   KFA Y FNKSHA  
Sbjct: 773  QSDTLRKAMGKKLIAQMDKLETLFYEGGVKNGHDQKVLNKIWEDWKKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ +S+QTA++K HYP E++AA ++  ++N+ ++ KF  + R   I+++ P VN     F
Sbjct: 833  YSWVSFQTAYLKAHYPAEYMAAVLSRNLNNITEVIKFIDECRALGIKVLGPDVNESRQKF 892

Query: 829  KVGDNR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                +  I + L+AIKG+G   A+ I+E    + P+ ++ DF  RV+   +N++ LE L 
Sbjct: 893  SANKDGIIRFGLSAIKGMGDAAAQSIVEERTKNGPYKNIYDFIERVNINAVNKKALELLA 952

Query: 887  FAGALDCF-GYSRMQLL-------QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
             +GALD F    R Q L         +D + +Y Q  +  +     ++F  +        
Sbjct: 953  LSGALDGFKELKREQYLTKNIKGEPFIDLLVRYGQRYQSEQNQSQNSLFGGDDAAEIPHP 1012

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNI 995
            T  ++   +       E+  +G Y S HPLD +  ++  +      E    +A     N+
Sbjct: 1013 TPPEWEEWSHIELLNRERDCIGIYLSAHPLDEFSMVINNLCNANCNELADNLALASKENV 1072

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             L  +V   + + T+KG   G+VT  +         F
Sbjct: 1073 ALGGIVTLSEARTTKKGLPCGFVTIEDFNGSGRLALF 1109


>gi|207091746|ref|ZP_03239533.1| DNA polymerase III subunit alpha [Helicobacter pylori HPKX_438_AG0C1]
          Length = 1211

 Score =  967 bits (2499), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1078 (34%), Positives = 586/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  ++      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +K   GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAKNEGLDFEDDASYFAHKVREGLKERLILVPKEKH---DQYQERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L AIKGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|89255882|ref|YP_513244.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            holarctica LVS]
 gi|115314369|ref|YP_763092.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            holarctica OSU18]
 gi|156501865|ref|YP_001427930.1| DNA polymerase III subunit alpha [Francisella tularensis subsp.
            holarctica FTNF002-00]
 gi|167009646|ref|ZP_02274577.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            holarctica FSC200]
 gi|290953372|ref|ZP_06557993.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            holarctica URFT1]
 gi|295313376|ref|ZP_06803984.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            holarctica URFT1]
 gi|89143713|emb|CAJ78912.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            holarctica LVS]
 gi|115129268|gb|ABI82455.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica
            OSU18]
 gi|156252468|gb|ABU60974.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            holarctica FTNF002-00]
          Length = 1159

 Score =  967 bits (2499), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1041 (37%), Positives = 591/1041 (56%), Gaps = 41/1041 (3%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
             +L +D +               +  +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVDTEFG-------------ICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
               WL E+  E +I L GG  G + +A        A++ +    ++FG   Y+ ++ H+ 
Sbjct: 111  PKFWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYI-IEIHKL 169

Query: 191  --GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
                +     + ++ A  + L  VATN ++F+  +DY+ H++   +   T +  + R  +
Sbjct: 170  EYENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP             E
Sbjct: 230  FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVNIPAG----LTE 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVIARMKFSGYFLIVAD 362
            +         GL+ RL +    +     +     Y+ RL  E+++I  M F GYFLIV D
Sbjct: 286  KEYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 346  FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  
Sbjct: 406  CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P      + + +     E   AD  V  ++E +QKLEGL R    HAAGIVI    +S  
Sbjct: 466  PGTTFK-KILHEGEPLYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----DL 598
             P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +        D+
Sbjct: 525  APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI
Sbjct: 585  ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMG
Sbjct: 645  PTFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASKNG-ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KK  EEM+KQ++ F  GA+K+  I   +   IF+ +  FA YGFNKSHAAAYA+I+YQTA
Sbjct: 705  KKKPEEMEKQRKIFKEGAAKHHNIDTKLVDEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIY 836
            W+K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I 
Sbjct: 765  WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTIL 824

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L AIKG+G    + I+ E      F S+ D C RVD +K+N++ LE+L +AGA+    
Sbjct: 825  LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRF 952
             +R     S++   K A +V +      +++F   +        LE+       N     
Sbjct: 885  KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNIRLAA-MVVSKQQKKTR 1010
             NE++ LG YFSGH +D        +     E+     + GN++R+ A M+    ++KT+
Sbjct: 945  INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004

Query: 1011 KGSRIGWVTFSEPAKEYEANF 1031
             G  +  +   +     +   
Sbjct: 1005 TGRVLYIINIDDEFDRADCLI 1025


>gi|332169580|gb|AEE18835.1| DNA polymerase III, alpha subunit [Krokinobacter diaphorus 4H-3-7-5]
          Length = 1463

 Score =  966 bits (2498), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1081 (33%), Positives = 563/1081 (52%), Gaps = 69/1081 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-------AC 63
            F HL  HS +S+L+   S+ +I+   A  + PA+A+TD  N+  A  F++        A 
Sbjct: 262  FAHLHNHSQFSILQSTASVQDIVKAAALHKMPAVAMTDMGNMMGAFHFTKAVKSHNAFAK 321

Query: 64   AAGIQP--------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            A   +          +  +  I  + N+ + ++ K+       IV+L     GYQ L ++
Sbjct: 322  AENAKLTEAGEAEEHVPLKAIIGCEFNVCVDHKNKSQKDNGYQIVILAKNKNGYQNLCKM 381

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S  Y  D      RI    +++   E LI+LTG   G +         + AE+ L+ +K
Sbjct: 382  ASIAYT-DGFYYVPRIDKQVIEQY-KEDLIVLTGNLYGEVPSKILNVGEKQAEEALIWWK 439

Query: 176  KLFGDRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            + FGD LYV + RH   D  R    ++ L+  H++ L+A+NN+ ++ + D +AHDVL+ V
Sbjct: 440  EQFGDDLYVEIMRHGQEDEDRVMPVLITLSRKHDVKLIASNNTFYIDKSDADAHDVLLCV 499

Query: 235  AHSTVVSQKDRPR-------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
                 V+                ++Y K+  EM ++F+D+PEA+ N  E+  +       
Sbjct: 500  KDGEKVATPKGRGRGYRFGLPNDEYYFKSADEMKTLFADVPEAILNVQEVVNKIESYELA 559

Query: 288  HAPILPRFIEKE--------CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
               +LP F   E         D  ++ E   L++    G + R  +        +++  +
Sbjct: 560  RDVLLPAFDIPEEFVSPEDAIDGGKQGENAFLKHLVYEGAKKRYGEEL------SEEVIE 613

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RLDFEL+VI +  + GYFLIV DFI+ A+  ++ VGPGRGS AGSV AY L IT+IDPL+
Sbjct: 614  RLDFELDVIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVAAYCLWITNIDPLK 673

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            + LLFERFLNPDR+SMPD DIDF  + R  V++YV +KYG  +VAQIIT+G++ AK+++R
Sbjct: 674  YDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMQYVIDKYGANQVAQIITYGTMAAKSSIR 733

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD--PSVDRLLEI--- 514
            D  RAL +     DR+ KLIP              D+  R A  +D  P V  L+ +   
Sbjct: 734  DTSRALDLSLGDADRIAKLIPTMSKLRKIFG--KTDAELRSAFRSDDLPKVQELITLEQA 791

Query: 515  ----------SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
                      +++LEG  R+   HA G++I    ++  VP+     SDL VTQF+   +E
Sbjct: 792  DNLEGQMLRQARQLEGSVRNTGIHACGVIITPSDITNFVPVALAKDSDLYVTQFDNSVVE 851

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
            +AGL+K DFLGLKTLTL++ ++  +  R  V +D    P DD +TY L     T+GIFQ 
Sbjct: 852  EAGLLKMDFLGLKTLTLIKDTVKLVKYRHDVDLDPESFPLDDEKTYELFQRGDTVGIFQY 911

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES GM++ ++ ++P   ED+IA+ +LYRPGP++ I  +  RK+G+E+I    P ++  LK
Sbjct: 912  ESPGMQKHMQSLKPTVFEDLIAMNALYRPGPMEYIPSFVRRKHGEEEIEYDLPAMEEYLK 971

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK    +DK K +FI  AS  G   
Sbjct: 972  ETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQASAKGHDP 1031

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                 I++    FA Y FNKSH+  YA I+YQTA++K HYP E+LAA ++  M++++++ 
Sbjct: 1032 EKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYLKAHYPAEYLAAVLSNNMNDIKQVT 1091

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPF 862
             F ++A++  ++++ P VN     F V DN  + + + A+KGVGT     I+E   D  +
Sbjct: 1092 FFMEEAKRMGLEVLGPDVNESFRKFTVNDNGAVRFGMGAVKGVGTGAVATIVENRKDGNY 1151

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS--RMQLLQS-------LDNIQKYAQ 913
             S+ DF  RVD +  N++  ESL  AG  D    +  R Q           L+   KY  
Sbjct: 1152 KSVFDFARRVDLRAANKKAFESLALAGGFDELDRNTHRAQFFNHDGDGITFLEKAVKYGA 1211

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
              ++N  +   ++F         +  +       +  + + E+ V+G Y SGHPLD +K 
Sbjct: 1212 RYQENENSSQVSLFGESSEVQIPEPEVPPCEEWGTMEKLKREKEVVGVYISGHPLDDFKT 1271

Query: 974  ILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             +                     +    ++   Q + ++ G      T  +    +E   
Sbjct: 1272 EMETFCNATVAHFSQMESFINRELTFGGVISDVQHRVSKNGKGWAAFTVEDFTDTFEFRM 1331

Query: 1032 F 1032
            F
Sbjct: 1332 F 1332


>gi|308183558|ref|YP_003927685.1| DNA polymerase III subunit alpha [Helicobacter pylori PeCan4]
 gi|308065743|gb|ADO07635.1| DNA polymerase III subunit alpha [Helicobacter pylori PeCan4]
          Length = 1211

 Score =  966 bits (2498), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1078 (34%), Positives = 587/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A++    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKRIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAKEEGLDFEDDASYFAHKAREGLKERLILVPKEKH---DQYQERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L AIKGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMTDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|261838735|gb|ACX98501.1| DNA polymerase III alpha subunit [Helicobacter pylori 51]
          Length = 1211

 Score =  966 bits (2498), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1078 (34%), Positives = 587/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFEDDASYFAHKAREGLKERLVLVPKEKH---DQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L AIKGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKSELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKHEN--IFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                +  +F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGDNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|189461926|ref|ZP_03010711.1| hypothetical protein BACCOP_02593 [Bacteroides coprocola DSM 17136]
 gi|189431320|gb|EDV00305.1| hypothetical protein BACCOP_02593 [Bacteroides coprocola DSM 17136]
          Length = 1265

 Score =  966 bits (2497), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1147 (31%), Positives = 578/1147 (50%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59
             FVHL VH+ YS+L+G  S+  ++DK  A+    IA+TD  ++F   EF           
Sbjct: 3    DFVHLHVHTQYSILDGQASIPRLVDKAIANGMRGIAVTDHGDMFGIKEFFNYVNKKNGGT 62

Query: 60   -----------------------------------QKACAAGIQPIIGCQLDIDMQDNLK 84
                                               + A     +PIIGC++ +      +
Sbjct: 63   NGEIKDLKKKIAALESGKAESENPEVDLAACREQLEAAKKKLFKPIIGCEMYVA---RRR 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            +T++      +   +V+L    +GY  LI+LVS+ +         R     L++   EGL
Sbjct: 120  LTDKEGKADQSGYHLVVLAKNLKGYHNLIKLVSKAWTEG-FYMRPRTDRVELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-----------YD 193
            I+ +    G I R         AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IVCSACLGGEIPRRITAGQFAEAEEAIQWYKNLFGDDFYLELQRHKATVPRANHETYKLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                 ++V+ +  + + LV TN+  F+ EE+ EAHD L+ ++    +   +R   T   +
Sbjct: 238  EVVNQKLVEYSKKYNIKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K R EM  +F+D+PEAL NT +I  +  F    +API+P F   E    ++E       
Sbjct: 298  MKTREEMNEVFADVPEALANTCDICDQVEFYSIDNAPIMPTFAIPEDFGTEEEYRKKFTE 357

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L   A  G   R  + 
Sbjct: 358  KDLFDEFTQDENGNVVMDEASAKAKIERLGGYEKLYRIKLEADYLAKLAYDGARRRYGEH 417

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                     + ++R+ FEL+++  M F GYFLIV DFI  A+   ++ VGPGRGS AGS 
Sbjct: 418  L------EDEVKERIKFELHIMKTMGFPGYFLIVQDFISAARNQLDVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA 
Sbjct: 472  VAYCLGITQIDPIKYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRLCKL+P+  P   ++L  AIA     + A +
Sbjct: 532  IITYGTMATKLAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEV 591

Query: 504  A-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558
            + DP +   ++ ++ LEG  R+   HA G +I    ++  VP+     ++    + VTQ+
Sbjct: 592  SSDPVLRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL++++++L+ + Q +G+ +++  IP DD  TY L +   T
Sbjct: 652  EGSVIEDTGLIKMDFLGLKTLSIIKEALENIKQSKGIILNIDEIPIDDPATYRLYSEGRT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELQPTTFEDLIAMNALYRPGPMDYIPDFIDRKQGRKPIEYDIPV 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGK 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    I   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA+M+  + 
Sbjct: 832  KNGHDPKILEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAATMSRNIS 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-E 855
            N+ +I K   +++   + ++ P VN   + F V     I + L AIKGVG +  + I+ E
Sbjct: 892  NITEITKLMDESKATGVNVLGPDVNESSLKFSVNRHGDIRFGLGAIKGVGESAVQSILTE 951

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL-------QSLDN 907
               + PF  + DF  RV+    NR+ +E+L  AGA D F    R             ++ 
Sbjct: 952  RQKNGPFKDIFDFVQRVNLSACNRKNIENLALAGAFDSFPNIHREDFFVKNAKDETFVEV 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         + + S  +   R   E+ ++G Y S HP
Sbjct: 1012 LVRYGNKYQMDKAAAANSLFGGEHEVEIATPEIVRASAWSDLERLNKERELVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD +  IL  +      +      ++ +++ L  +V   ++  T+ G   G     + + 
Sbjct: 1072 LDEFSVILENVCNTHMAQLSDLTPLQNHDLTLGGIVTGVREGYTKTGKPFGVAKVEDYSG 1131

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1132 TAEFAFF 1138


>gi|313837783|gb|EFS75497.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL037PA2]
 gi|314927335|gb|EFS91166.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL044PA1]
 gi|314972435|gb|EFT16532.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL037PA3]
          Length = 1219

 Score =  966 bits (2497), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/1074 (31%), Positives = 537/1074 (50%), Gaps = 62/1074 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66
             FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +       
Sbjct: 34   DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQ 93

Query: 67   ---IQPIIGCQLDIDMQDNLKMT-----------------NQGKTPFPTVPSIVLLVSTA 106
               ++PIIG +  +                           +  +       + +     
Sbjct: 94   NPLVKPIIGIEAYVAPSTRTSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTMWAKDP 153

Query: 107  EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
            EG   L  L S            R+    + +    G+I  TG  SG +         + 
Sbjct: 154  EGLHNLFRLSSLASYEG-YYMKPRMDRELMSQYPD-GIIASTGCPSGEVQTRLRLGQFEE 211

Query: 167  AEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
            A +    ++ +F  +  +  L  H    ++   S +++LA   ++PL+ TN+S +++E+ 
Sbjct: 212  ACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLRLAKKLDIPLLVTNDSHYVTEDQ 271

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
             +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ +      
Sbjct: 272  ADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDYPEACDNTLLLTEMIGS 331

Query: 284  ILQV--HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
              +V  H   +P+F   E +     +E+ LR K   GL+ +            ++  +RL
Sbjct: 332  YDEVFKHVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------PKEVLERL 381

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + EL+VI  + FS YFLIV+D    A+   +PVGPGRGS AGS+ AY   I  I+PL   
Sbjct: 382  ETELSVIEPLGFSSYFLIVSDICSAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPLEHG 441

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R++ PD D+DF   +RD+VI YV  KYG E  +Q+ TFG ++AKAA++D 
Sbjct: 442  LLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTYKYGAEYTSQVNTFGKIKAKAAVKDA 501

Query: 462  GRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLL 512
             R L  P+S  D++ K +P D     V L  I D S         FR+    +P V +++
Sbjct: 502  NRILGYPFSLGDKITKAMPPDVMGKGVPLDKIFDPSHERYGEGQEFRQLVADNPDVAKVV 561

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            + ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ GL+K D
Sbjct: 562  DTARGLEGLIRGTGVHACAFILSSAPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLMKMD 621

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGL+ L ++   +  +   RG+ VDL  +  DD  TY +L    TLG+FQL+ + MR  
Sbjct: 622  FLGLRNLGIMDHCIKIIKDNRGIDVDLKDLALDDTATYEMLARGDTLGVFQLDGTAMRSL 681

Query: 632  LEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKET 685
            L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D +L  T
Sbjct: 682  LRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEILAPT 741

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
              +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G S   
Sbjct: 742  YHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYSDDA 801

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +K+  +
Sbjct: 802  IQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKMAMY 861

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDS 864
              D R  +I ++PP VN   ++F      I + L A++ VG      I+ A   + P   
Sbjct: 862  LADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREENGPAPD 921

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
               F  RV     N+R++ESL+ AGA D  G+SR  L+   +        +++N+ N  +
Sbjct: 922  FFTFLDRVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAIYEQAVDAVIDIKRNQVNGQD 981

Query: 925  NIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            ++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L      
Sbjct: 982  DLFGMGDDSQPSQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAESDI 1041

Query: 982  GYEESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               E V           +A MV    ++ T+ G     VT  +         FP
Sbjct: 1042 SVAELVNPEAHHEGRYTVAGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1095


>gi|56707551|ref|YP_169447.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis SCHU S4]
 gi|110670022|ref|YP_666579.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis FSC198]
 gi|254370074|ref|ZP_04986080.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis FSC033]
 gi|56604043|emb|CAG45035.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis SCHU S4]
 gi|110320355|emb|CAL08418.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis FSC198]
 gi|151568318|gb|EDN33972.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis FSC033]
 gi|282158705|gb|ADA78096.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis NE061598]
          Length = 1159

 Score =  966 bits (2497), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1041 (37%), Positives = 593/1041 (56%), Gaps = 41/1041 (3%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
             +L +D +               +  +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVDTEFG-------------ICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
              SWL E+  E +I L GG  G + +A        A++ +    ++FG   Y+ ++ H+ 
Sbjct: 111  PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYI-IEIHKL 169

Query: 191  --GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
                +     + ++ A  + L  VATN ++F+  +DY+ H++   +   T +  + R  +
Sbjct: 170  EYENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP             E
Sbjct: 230  FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVNIPAG----LTE 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVIARMKFSGYFLIVAD 362
            +         GL+ RL +    +     +     Y+ RL  E+++I  M F GYFLIV D
Sbjct: 286  KEYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 346  FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  
Sbjct: 406  CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P      + + +     E   AD  V  ++E +QKLEGL R    HAAGIVI    +S  
Sbjct: 466  PGTTFK-KILHEGETLYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----DL 598
             P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +        D+
Sbjct: 525  APVYCENKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI
Sbjct: 585  ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + +RK+ +++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMG
Sbjct: 645  PTFIDRKHSRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASKNG-ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KK  EEM+KQ++ F  GA+K+  I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTA
Sbjct: 705  KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIY 836
            W+K HYP E++AA M+ +M N +++ KF  D +  +I ++ P+VN    D   V    I 
Sbjct: 765  WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMSITVLAPNVNKSVYDCIAVSKGTIL 824

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L AIKG+G    + I+ E      F S+ D C RVD +K+N++ LE+L +AGA+    
Sbjct: 825  LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRF 952
             +R     S++   K A +V +      +++F   +        LE+       N     
Sbjct: 885  KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNIRLAA-MVVSKQQKKTR 1010
             NE++ LG YFSGH +D        +     E+     + GN++R+ A M+    ++KT+
Sbjct: 945  INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004

Query: 1011 KGSRIGWVTFSEPAKEYEANF 1031
             G  +  +   +     +   
Sbjct: 1005 TGRVLYIINIDDEFDRADCLI 1025


>gi|254368720|ref|ZP_04984733.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica
            FSC022]
 gi|157121641|gb|EDO65811.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica
            FSC022]
          Length = 1159

 Score =  965 bits (2496), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1041 (37%), Positives = 590/1041 (56%), Gaps = 41/1041 (3%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
             +L +D +               +  +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVDTEFG-------------ICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
               WL E+  E +I L GG  G + +A        A++ +    ++FG   Y+ ++ H+ 
Sbjct: 111  PKFWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYI-IEIHKL 169

Query: 191  --GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
                +     + ++ A  + L  VATN ++F+  +DY+ H++   +   T +  + R  +
Sbjct: 170  EYENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP             E
Sbjct: 230  FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVNIPAG----LTE 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVIARMKFSGYFLIVAD 362
            +         GL+ RL +    +     +     Y+ RL  E+++I  M F GYFLIV D
Sbjct: 286  KEYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 346  FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  
Sbjct: 406  CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P      + + +     E   AD  V  ++E +QKLEGL R    HAAGIVI    +S  
Sbjct: 466  PGTTFK-KILHEGEPLYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----DL 598
             P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +        D+
Sbjct: 525  APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI
Sbjct: 585  ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + +RK+G+++I  +HPL+  +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMG
Sbjct: 645  PTFIDRKHGRKQITYLHPLLKGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASKNG-ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KK  EEM+KQ++ F  GA+K+  I   +   IF+ +  FA YGFNKSHAAAYA+I+YQTA
Sbjct: 705  KKKPEEMEKQRKIFKEGAAKHHNIDTKLVDEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIY 836
            W+K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I 
Sbjct: 765  WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGMIL 824

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L AIKG+G    + I+ E      F S+ D C RVD +K+N++ LE+L +AGA+    
Sbjct: 825  LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRF 952
             +R     S++   K A +V +      +++F   +        LE+       N     
Sbjct: 885  KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNIRLAA-MVVSKQQKKTR 1010
             NE++ LG YFSGH +D        +     E+     + GN++R+ A M+    ++KT+
Sbjct: 945  INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004

Query: 1011 KGSRIGWVTFSEPAKEYEANF 1031
             G  +  +   +     +   
Sbjct: 1005 TGRVLYIINIDDEFDRADCLI 1025


>gi|188528231|ref|YP_001910918.1| DNA polymerase III subunit alpha [Helicobacter pylori Shi470]
 gi|188144471|gb|ACD48888.1| DNA polymerase III subunit alpha [Helicobacter pylori Shi470]
          Length = 1211

 Score =  965 bits (2496), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1078 (34%), Positives = 586/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFEDDASYFAYKAREGLKERLVLVPKEKH---DQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L AIKGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGEPEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|217033909|ref|ZP_03439333.1| hypothetical protein HP9810_870g41 [Helicobacter pylori 98-10]
 gi|216943672|gb|EEC23117.1| hypothetical protein HP9810_870g41 [Helicobacter pylori 98-10]
          Length = 1211

 Score =  965 bits (2496), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1078 (34%), Positives = 586/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIRMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKTYAQNEGLSFEDDASYFAYKAREGLKERLVLVPKEKH---DQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K++F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQAIGGFSLGEADLIRRAMGKKDAQIMADNKDKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L AIKGVG    ++I+E     
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGEPEKKIVFGLGAIKGVGGEPIKNIIEERTKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|189468209|ref|ZP_03016994.1| hypothetical protein BACINT_04605 [Bacteroides intestinalis DSM
            17393]
 gi|189436473|gb|EDV05458.1| hypothetical protein BACINT_04605 [Bacteroides intestinalis DSM
            17393]
          Length = 1264

 Score =  965 bits (2495), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1146 (31%), Positives = 573/1146 (50%), Gaps = 134/1146 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ------------------------------------KACAAGIQPIIGCQLDIDMQDNLK 84
                                                +A     +PIIGC++ +       
Sbjct: 63   KGEIKDLKKRMAGIESGEIACDDKEAELADCRAKIAEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVSR +         R   + L++   EGL
Sbjct: 120  MDKKEGKPDQSGWHLIVLAKNEKGYHNLIKLVSRAWTKG-YYMRPRTDRNELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +    +  + AE+ +  +K LFG+  Y+ LQRHR              
Sbjct: 178  IVCSACIGGEVPKKIINDQLEDAEEAIRWYKNLFGEDYYLELQRHRATIPRANHEAYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   +++++ A  + + L+ +N+  F++EE  EAHD L+ ++    +   +R   T   +
Sbjct: 238  QKANAKLIEFAKKYNIKLICSNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--------- 304
            +K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    +         
Sbjct: 298  MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 357

Query: 305  --------------------------------------KEEENELRNKAVAGLEVRLAQG 326
                                                  K E + L      G ++     
Sbjct: 358  KDLFDEFTQDENGNVVLSEEDAKAKIKRLGGYEKLYRIKLEADYLAKLTFDGAKIFYGD- 416

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                   +++  +RL FEL+++  M F GYFLIV DFI   +   + +GPGRGS AGS  
Sbjct: 417  -----PLSEEVMERLKFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAV 471

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L IT IDP+++ LLFERFLNPDR+S+PD DIDF  D R EV+R+V  KYG E+VA I
Sbjct: 472  AYCLQITKIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTQKYGQEKVAHI 531

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA 504
            IT+G++  K A++DV R  ++P S+ DRL KL+P+  P   ++L  AI      + A  +
Sbjct: 532  ITYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIDYVPELQAAEAS 591

Query: 505  -DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFN 559
             DP V   L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+ 
Sbjct: 592  PDPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYE 651

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTL 618
               IE  GLIK DFLGLKTL++++++++ +   RG+ +++  +P DD  TY L +   T+
Sbjct: 652  GSVIEDTGLIKMDFLGLKTLSIIKEAVENVRLHRGLALNIDKVPIDDPATYKLYSDGRTI 711

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P++
Sbjct: 712  GTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVM 771

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  K
Sbjct: 772  EKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRK 831

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N
Sbjct: 832  NGHDPKVLEKIWGDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSN 891

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEAS 857
            +  I K   + +   I+++ P VN   + F V       + L A+KGVG     +IME  
Sbjct: 892  ITDITKLMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVLNIMEER 951

Query: 858  -ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNI 908
              +  F  + DF  RV+    N++ LE L  AG  D F    R Q           L+ +
Sbjct: 952  EKNGSFKGIFDFVQRVNLTACNKKNLECLALAGGFDEFPELRREQYFAVNSKNEVFLETL 1011

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +Y    + ++     ++F  +         + +    +   R   E+ ++G Y S HPL
Sbjct: 1012 VRYGNRYQADQAAAANSLFGGDNVVDIATPEIPEAERWSDLDRLNKERDLVGIYLSAHPL 1071

Query: 969  DVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            D Y  +L+ +      E      + G  I +  +V S ++  ++ G+  G     + +  
Sbjct: 1072 DEYSVVLQHVCNTRMAELEDKTALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGS 1131

Query: 1027 YEANFF 1032
             E  FF
Sbjct: 1132 AELPFF 1137


>gi|325270548|ref|ZP_08137148.1| DNA-directed DNA polymerase III alpha subunit [Prevotella multiformis
            DSM 16608]
 gi|324987124|gb|EGC19107.1| DNA-directed DNA polymerase III alpha subunit [Prevotella multiformis
            DSM 16608]
          Length = 1239

 Score =  965 bits (2495), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/1120 (31%), Positives = 547/1120 (48%), Gaps = 107/1120 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA----- 64
             +VHL VH++YS+L+G   +  ++DK  AD    +AITD   +F   EFS          
Sbjct: 3    DYVHLHVHTNYSILDGQSKVTRLVDKAVADGMKGMAITDHGVMFGIKEFSDYCAKVNKGR 62

Query: 65   -----AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                 A  +P+ GC++ +  +              +   +++L     GY+ LI+LVS+ 
Sbjct: 63   KEKGEAPFKPVFGCEMYVARRSMHDKDK--GMHDNSGYHLIVLAKNHHGYKNLIKLVSKA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++ D      R     L++   E LI+ +   +G I      +  + A +    + ++FG
Sbjct: 121  WV-DGYYYKPRTDREQLEKYH-EDLIVCSACIAGEIPSKIIHDDIEGAREACEWYHRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     +++ A  + + ++ TN+  F  +E  E
Sbjct: 179  DDFYLELQRHEVKDPTLAANREAYPLQQKANRVLLRFAREYGIKVICTNDCHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++ +  +    R R +   + K R EM  +FSD+PEAL NT+EI  +      
Sbjct: 239  AHDHLLCISTNEDLDDPKRMRYSKQEWFKTRQEMNEVFSDIPEALTNTLEILDKVEIYSI 298

Query: 287  VHAPILPRFIEKEC-------------DDIQKE--------------------------- 306
             H PI+P F   E              DD+ +E                           
Sbjct: 299  DHGPIMPFFPIPEDFGTEGEWREKFSEDDLYREFTTDENGEHPLPPEEGQKVIARLGGYE 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L   A  G   RL    +     + + +  + FEL+V+  M F GYFLI
Sbjct: 359  KIYRIKFEADYLAKLAYDGA-KRLYGDPL-----SDEVKNHIRFELHVMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD 
Sbjct: 413  VQDFINAAREKLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R +V+++V +KYGHE  A IIT+ ++  K +++DV R  ++P    + LCK 
Sbjct: 473  DTDFDDDGRGKVLQWVMDKYGHENCAHIITYSTMATKNSIKDVARVERLPLDVANGLCKA 532

Query: 479  IPNDPAHPVSLQ---AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP+     + +    AI    R ++A ++ D      ++ ++ LEG  R    HA G +I
Sbjct: 533  IPDRLPDGMKMNLTNAIRCTPRLQDAEVSEDARERNTIKYAKMLEGTVRGTGIHACGFII 592

Query: 535  GDRPLSQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+   VP+      D     +PVTQ++   IE  GLIK DFLGLKTL+ L+++   +
Sbjct: 593  CRNPIDDWVPVSTASDPDFPEQKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVI 652

Query: 590  AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q     VDL  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +
Sbjct: 653  RQTTGDVVDLDNIPIDDELTYRLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK+    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPDFIKRKHDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E+D LR+AMGKK K  +D+ K +FI    +NG    I   I+    KFA Y FNKSHA  
Sbjct: 773  ESDALRKAMGKKKKAIVDQMKPKFIRQGQENGHDPQILEKIWSDWEKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ ++YQTA++K HYP E++AA MT     + +I K  ++ +   I  + P VN     F
Sbjct: 833  YSWVAYQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKAMKIATLGPDVNESRTGF 892

Query: 829  KV-GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V G   I + LAAIKG+G + A  I+ E  A+ P+  + DF  RVD   +NR+  ESL 
Sbjct: 893  GVNGKGEIRFGLAAIKGMGASAAESIVREREANGPYKDIYDFAERVDLSNVNRKAFESLA 952

Query: 887  FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            ++G  D FG  R Q           LD I +Y Q  +  +  +  ++F            
Sbjct: 953  YSGGFDSFGLQREQYFAETGKGSLFLDTIVRYGQLYQAEKAEQQNSLFGGMDAVEVMHPV 1012

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIRGN 993
              K     +  +   E+ ++G Y S HPLD Y  IL  M            +  A    +
Sbjct: 1013 APKTENWPAIEKLNKERELVGIYLSAHPLDEYSVILNNMCNTRCPQIGRDADLAALSALD 1072

Query: 994  NIRLAAMVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032
             +    +V +  ++ + + G   G+VT  +     E   F
Sbjct: 1073 EVTFGGIVTAVNERFSQKTGKPFGFVTIEDFNGSGELALF 1112


>gi|323344416|ref|ZP_08084641.1| DNA-directed DNA polymerase III alpha subunit [Prevotella oralis ATCC
            33269]
 gi|323094543|gb|EFZ37119.1| DNA-directed DNA polymerase III alpha subunit [Prevotella oralis ATCC
            33269]
          Length = 1235

 Score =  965 bits (2495), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1110 (33%), Positives = 556/1110 (50%), Gaps = 91/1110 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------ 63
             +VHL VH+ YS+L+G   ++ ++DK  AD    +A+TD   +F   EFS          
Sbjct: 3    DYVHLHVHTYYSILDGQSKISYLVDKAIADGMRGMALTDHGAMFGIKEFSDYCEGVNKKR 62

Query: 64   ----AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                    +PI GC++ +      K   +  +   +   +++L     GY+ LI+LVSR 
Sbjct: 63   KAEGKEPFKPIFGCEMYVAR--RHKEDKEKDSGDKSGYHLIVLAKNYNGYKNLIKLVSRS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++ D      R     L+    E LI+ +   +G +         + A K L  +K++FG
Sbjct: 121  WV-DGYYYRPRTDHDDLERYH-EDLIVCSACIAGEVPSKILKGDIEGARKSLEWYKRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +  Y+ LQRH   D                   +++ A  + + L+ TN+  F  +E  E
Sbjct: 179  EDFYLELQRHEVKDPSLIANRTTYPLQEKVNKILIEFAKEYGIKLICTNDVHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    +   +R R T   + K R+EM  +F D+PE L NT+EI  +      
Sbjct: 239  AHDHLLCISTQADLDDPNRMRYTKQEWFKTRAEMNEVFYDMPEVLSNTLEILDKVEIYSI 298

Query: 287  VHAPILPRFIEKE--------------------------CDDIQKEEENELRNKAVAGLE 320
             H PI+P F   E                           +++   EE ELR + + G +
Sbjct: 299  GHDPIMPFFPIPEDFGTEELWRQKFTKEDLYKEFCSDENGENMMSPEEGELRIRHLGGYD 358

Query: 321  V------------RLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                         +LA     K Y     Q+  +R+ FEL+V+  M F GYFLIV DFI 
Sbjct: 359  KIYRIKFEADYLAKLAYDGAKKVYGSPMPQEVIERVKFELHVMKTMGFPGYFLIVQDFIN 418

Query: 366  WAK-KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             A+ +  + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+S+PD D DF  
Sbjct: 419  AARNELEVMVGPGRGSAAGSVVAYCLGITQIDPLKYDLLFERFLNPDRISLPDIDTDFDD 478

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D R  V+++V +KYGHE  A IIT+ S+  K +++DV R  ++P  + + LCK IP+   
Sbjct: 479  DGRGRVLQWVMDKYGHENCAHIITYSSMATKNSIKDVARVEKLPLEKSNALCKAIPDRLP 538

Query: 485  HPVSL---QAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              + +    AI      +EA  + DP     ++ ++ LEG  R    HA G +I   P+S
Sbjct: 539  DGMKMNLTNAIYCTPELKEAEASTDPRERNTIKYAKMLEGTVRGTGIHACGFIICRDPIS 598

Query: 541  QLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
              VP+      D     +PVTQ++   IE  GLIK DFLGLKTL+ L++++  +    G+
Sbjct: 599  NWVPVSTADDPDFKDKKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEAVKDVKISLGI 658

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VDL  IP DD  TY L     T+G FQ ES GM++ L  + P   ED+IA+ +LYRPGP
Sbjct: 659  EVDLDHIPLDDELTYKLYQEGRTIGTFQFESPGMQKHLRELHPTVFEDLIAMNALYRPGP 718

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RK+    +    P ++  LK+T G+ +YQEQVM +++ L+G++  E+D LR
Sbjct: 719  MDYIPDFIRRKHDSSLVQYDIPCMEKYLKDTYGITVYQEQVMLLSRQLAGFTRGESDALR 778

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +AMGKK K  +D  K +FI G  K G    +   I+    KFA Y FNKSHA  Y+ ++Y
Sbjct: 779  KAMGKKKKAIVDAMKPKFIEGGKKKGHDPKVLEKIWTDWEKFASYAFNKSHATCYSWVAY 838

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN- 833
            QTA+MK HYP E++AA MT    ++++I K   + +  NI  + P VN   ++F V    
Sbjct: 839  QTAYMKAHYPAEYMAAIMTRRRSDIKEITKLMDECKSMNIATLGPDVNESYLEFGVNKKG 898

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + LAAIKG+G   A  I+ E   +  +  + DF  RVD   +NR+  ESL  +G  D
Sbjct: 899  EIRFGLAAIKGMGDAAAEAIIKEREKNGIYKDIFDFAQRVDFSYVNRKAFESLAVSGGFD 958

Query: 893  CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
             FG  R Q L         LD + +Y Q  +  +T    ++F            + +   
Sbjct: 959  DFGLRREQYLGVNTKGDMFLDTLVRYGQMYQAGQTEAQNSLFGDADAIEIATPPIPQGEE 1018

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIRLAAMVV 1002
             ++  R   E+ ++G Y S HPLD +  IL  M      E        + N I +  +V 
Sbjct: 1019 WSTIERLNRERELVGIYLSAHPLDDFSIILNSMCNTHCSELDNKAELAKKNEITIGGIVT 1078

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + K T+ G   G+VT  +     E  FF
Sbjct: 1079 GVKSKFTKTGKPCGFVTIEDYEGSGELAFF 1108


>gi|116332230|ref|YP_801948.1| DNA-directed DNA polymerase, alpha subunit [Leptospira borgpetersenii
            serovar Hardjo-bovis JB197]
 gi|116125919|gb|ABJ77190.1| DNA-directed DNA polymerase, alpha subunit [Leptospira borgpetersenii
            serovar Hardjo-bovis JB197]
          Length = 1147

 Score =  965 bits (2495), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1012 (35%), Positives = 572/1012 (56%), Gaps = 28/1012 (2%)

Query: 33   LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
            +  +  +   ++A+TD  N+F A+EF  +A   GI+PIIG +  +   +  + T   K  
Sbjct: 1    MQHVKENGMSSVAMTDHGNMFGAVEFYNEATKQGIKPIIGSEFYVSP-NRKQETEMVKIA 59

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
              +   ++LL    EGY+ LI L S+ Y      +  RI    L +    GL+ LT   +
Sbjct: 60   DGSAYHLILLAKNEEGYKNLIRLSSKSYTEG-FYKKARIDYDLLAQ-HNGGLVCLTACLA 117

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYDRYRES-QVVQLAYTHELP 210
            G ++R         + +      ++F  +  Y+ +Q H   ++   + Q+        +P
Sbjct: 118  GEVNRKILEGKIDESFQLAGKLNEIFRKEDFYMEIQNHGIPEQMTVAKQIYDFGKRTGIP 177

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
            LV TN+S FL ++D EA D+L+ +     ++         + Y+K+  EM  +F ++PEA
Sbjct: 178  LVVTNDSHFLKKDDQEAQDILLRIGMQKRITDPMEFGFNGEFYVKSPDEMARVFPEIPEA 237

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
              NT+EI+ +    LQ    +LP F   E  D     ++ L      G+  +        
Sbjct: 238  FYNTLEISNKVDLKLQFGNYLLPEFEVPEGYDA----DSYLEKLIWEGIGRKYPN----- 288

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
               + + + R+ FELN I  MKF+GYFLIV D+I +AK+N IPVGPGRGS AGS+ AYAL
Sbjct: 289  --LSPEIKDRVVFELNTIKNMKFAGYFLIVQDYINYAKRNGIPVGPGRGSAAGSIVAYAL 346

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             IT+++PL+ +LLFERFLNPDR  MPD D DFC +RR+EVI Y++ +YG E+V QIITF 
Sbjct: 347  GITNVEPLQHNLLFERFLNPDRKDMPDIDTDFCVERREEVINYIRRRYGEEKVGQIITFN 406

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            SL AKAAL+DV R L +P+ + + + K  PN     +  +A+   S  +     D    +
Sbjct: 407  SLAAKAALKDVARVLNLPFGEANEMTKAFPNKLGMSI-AEALTTSSELKNFSEKDDINHK 465

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEK 565
            +  I+Q+LEG YR    HAAG+VI   PL ++VP+      + P     VTQ++   +E 
Sbjct: 466  IFAIAQRLEGNYRQPGRHAAGVVISPYPLEEVVPLSTVAEKERPGSRSIVTQYDKNNLES 525

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GLIK D LGLK LT L  ++  +  +RGV++DL  IP++D  TY LL    TLGIFQLE
Sbjct: 526  IGLIKMDILGLKNLTTLDYAIKLIERRRGVRIDLDEIPYNDANTYALLRKANTLGIFQLE 585

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPML 682
            S+G+   +   Q +  ++I+AL++LYRPGP+   ++  Y +RK+G++++   HP  +P+L
Sbjct: 586  STGITDLVAKSQVNNFDEIVALIALYRPGPMGEGMLDEYLDRKSGRKQVTYPHPSCEPIL 645

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            KET GV +YQEQVM I++++ G+S+ ++DVLR+AM KK  + M+K K +F+ GA K GI 
Sbjct: 646  KETFGVPVYQEQVMSISRVVGGFSVGDSDVLRKAMAKKKADLMEKLKYQFVEGAVKQGIQ 705

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
            + +A + FE L +F  YGFNKSH+ AYA+I+YQTA++K +Y +E+L A +  +      I
Sbjct: 706  EKVAKDFFEQLERFGGYGFNKSHSVAYAIITYQTAYLKANYTIEYLTALLASDHGKTTDI 765

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEAS-ADK 860
             K+  +AR+  I+I+ P V+     F V D+    + L+A+KGVG T A  I+EA     
Sbjct: 766  VKYINNAREMGIRILNPDVSESQASFNVIDDATIRFGLSAMKGVGETAANSIIEARDKAG 825

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             F +L+DF   +D++ +N++V E+L+ AGALD FGY+R  L +S+D+I  +AQ  ++   
Sbjct: 826  NFKTLQDFALNIDTRLINKKVFEALIQAGALDSFGYTRKCLFESVDSILTFAQREQERTN 885

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                ++F   + +F+  +  +         +   E+ + G Y SGHPLD Y+  L+ +  
Sbjct: 886  EGQFSLFGVGESSFTLNLPKDAL-EWEIDEKLRREKAIAGLYLSGHPLDKYEKQLKSLRT 944

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               E+      G+ + +A ++ SK  K +++          +   E E   F
Sbjct: 945  IPIEKFDNLKSGSKVEVAGIISSKNIKLSKRNEEFANFKLEDRTGEIECVAF 996


>gi|307638113|gb|ADN80563.1| DNA polymerase III alpha subunit [Helicobacter pylori 908]
          Length = 1211

 Score =  965 bits (2495), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1078 (34%), Positives = 587/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ LI L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLIFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAKEEGLDFEDDASYFAHKAREGLKERLILVPKEKH---DQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNEIAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKIGVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L AIKGVG    ++I+E     
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERTKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F   +G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMEGGIKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|297380684|gb|ADI35571.1| DNA polymerase III, alpha subunit [Helicobacter pylori v225d]
          Length = 1211

 Score =  965 bits (2495), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1078 (34%), Positives = 586/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLSFEDDASYFAYKAREGLKERLVLVPKEKH---DQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L AIKGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|317013227|gb|ADU83835.1| DNA polymerase III subunit alpha [Helicobacter pylori Lithuania75]
          Length = 1211

 Score =  965 bits (2494), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1078 (34%), Positives = 587/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A++    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K   + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGHLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLDFEDDASYFAHKAREGLKERLILVPKEKH---DQYQERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK+ +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKSVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L A+KGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   ++I L+       ++    E E   LG + SG+PLD ++  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQIILDMTDLGEHDAKTLLECEYETLGIHVSGNPLDEFEEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|315585849|gb|ADU40230.1| DNA-directed DNA polymerase III alpha subunit [Helicobacter pylori
            35A]
          Length = 1211

 Score =  965 bits (2494), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1078 (34%), Positives = 585/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIRMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKSYAQNEGLNFEDDASYFAYKAREGLKERLVLVPKEKH---DQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDTQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E +  +  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVACYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L AIKGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|50842630|ref|YP_055857.1| DNA polymerase III subunit alpha [Propionibacterium acnes KPA171202]
 gi|50840232|gb|AAT82899.1| DNA polymerase III alpha subunit [Propionibacterium acnes KPA171202]
          Length = 1220

 Score =  965 bits (2494), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/1074 (31%), Positives = 536/1074 (49%), Gaps = 62/1074 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66
             FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +       
Sbjct: 35   DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQ 94

Query: 67   ---IQPIIGCQLDIDMQDNLKMT-----------------NQGKTPFPTVPSIVLLVSTA 106
               ++PIIG +  +                           +  +       + +    +
Sbjct: 95   NPLVKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTMWAKDS 154

Query: 107  EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
            EG   L  L S            R+    L      G+I  TG  SG +         + 
Sbjct: 155  EGLHNLFRLSSLASYEG-YYMKPRMDRE-LMGQYPGGIIASTGCPSGEVQTRLRLGQFEE 212

Query: 167  AEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
            A +    ++ +F  +  +  L  H    ++   S +++LA   ++PL+ TN+S +++E+ 
Sbjct: 213  ACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYVTEDQ 272

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
             +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ +      
Sbjct: 273  ADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLTEMIGS 332

Query: 284  ILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
              +V   +  +P+F   E +     +E+ LR K   GL+ +            ++  +RL
Sbjct: 333  YDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------PKEVLERL 382

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + EL+VI  + F+ YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+PL   
Sbjct: 383  ETELSVIEPLGFASYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPLEHG 442

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKAA++D 
Sbjct: 443  LLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAVKDA 502

Query: 462  GRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLL 512
             R L  P++  D++ K +P D     V L  I D S         FR+    +P V +++
Sbjct: 503  NRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVAKVV 562

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ GL+K D
Sbjct: 563  ETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLMKMD 622

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ + MR  
Sbjct: 623  FLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTAMRSL 682

Query: 632  LEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKET 685
            L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D +L  T
Sbjct: 683  LRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEILAPT 742

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
              +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G S   
Sbjct: 743  YHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYSDDA 802

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +K+  +
Sbjct: 803  IQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKMAMY 862

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDS 864
              D R  +I ++PP VN   ++F      I + L A++ VG      I+ A   + P   
Sbjct: 863  LADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREENGPAPD 922

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
               F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+ N  +
Sbjct: 923  FFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQANGQD 982

Query: 925  NIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            ++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L      
Sbjct: 983  DLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAESDI 1042

Query: 982  GYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1043 SVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1096


>gi|187931355|ref|YP_001891339.1| DNA polymerase III subunit alpha [Francisella tularensis subsp.
            mediasiatica FSC147]
 gi|187712264|gb|ACD30561.1| DNA polymerase III subunit alpha [Francisella tularensis subsp.
            mediasiatica FSC147]
          Length = 1159

 Score =  964 bits (2493), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1041 (37%), Positives = 591/1041 (56%), Gaps = 41/1041 (3%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
             +L +D +               +  +VLL    +GYQ ++ LVS+ Y   D+      I
Sbjct: 64   VELKVDTEFG-------------ICDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
              SWL E+  E +I L GG  G + +A        A++ +    ++FG   Y+ ++ H+ 
Sbjct: 111  PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYI-IEIHKL 169

Query: 191  --GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
                +     + ++ A  + L  VATN ++F+  +DY+ H++   +   T +  + R  +
Sbjct: 170  EYENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP             E
Sbjct: 230  FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVNIPAG----LTE 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVIARMKFSGYFLIVAD 362
            +         GL+ RL +    +     +     Y+ RL  E+++I  M F GYFLIV D
Sbjct: 286  KEYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+K+N+I VGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 346  FIRWSKENDISVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  
Sbjct: 406  CIQSRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P      + + +     E   AD  V  ++E +QKLEGL R    HAAGIVI    +S  
Sbjct: 466  PGTTFK-KILHEGEPLYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----DL 598
             P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +        D+
Sbjct: 525  APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI
Sbjct: 585  ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMG
Sbjct: 645  PTFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASKNG-ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KK  EEM+KQ++ F  GA+K+  I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTA
Sbjct: 705  KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIY 836
            W+K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I 
Sbjct: 765  WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTIL 824

Query: 837  YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L AIKG+G    + I+ E      F S+ D C RVD +K+N++ LE+L +AGA+    
Sbjct: 825  LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRF 952
             +R     S++   K A +V +      +++F   +        LE+       N     
Sbjct: 885  KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNIRLAA-MVVSKQQKKTR 1010
             NE++ LG YFSGH +D        +     E+     + GN++R+ A M+    ++KT+
Sbjct: 945  INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004

Query: 1011 KGSRIGWVTFSEPAKEYEANF 1031
             G  +  +   +     +   
Sbjct: 1005 TGRVLYIINIDDEFDRADCLI 1025


>gi|91788754|ref|YP_549706.1| DNA polymerase III subunit alpha [Polaromonas sp. JS666]
 gi|91697979|gb|ABE44808.1| DNA polymerase III, alpha subunit [Polaromonas sp. JS666]
          Length = 1190

 Score =  964 bits (2493), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1050 (39%), Positives = 605/1050 (57%), Gaps = 40/1050 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   ++ I+   AADQQPA+AITD +NLF  ++F ++   AG++P+
Sbjct: 19   FVHLRIHTEFSVVDGTNRIDEIVQAAAADQQPALAITDLSNLFGTVKFYKEGRGAGVKPL 78

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG         ++ +   GK        ++LLV    GY  L EL++R +  +  +    
Sbjct: 79   IGA--------DVWVQVPGKDAAAPAARLLLLVQNHRGYLNLSELLTRAWTRNVVRDQAV 130

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            I L WL+E+  EGLI L+G   G + +A        A +  L    LF  R Y+ LQR  
Sbjct: 131  IKLEWLEEL-NEGLIALSGAQGGAVGQALLQGDDARALECALHLAGLFPHRFYLELQRAQ 189

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D    +  VQLA   +LP+VAT+   FL+ +DYEAH+  + +A   ++    R  + 
Sbjct: 190  RPDDERHVAAAVQLAARLKLPVVATHPVQFLTYDDYEAHEARVCIAEGEILGNTRRVRKF 249

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K+ ++M  +F+D+P AL NT+EIARRC+  L++  P+LP +   E + ++   +
Sbjct: 250  TREQYFKSAAQMTQLFADVPSALANTLEIARRCNLKLELGKPMLPDYPTPEVEGVRMPID 309

Query: 309  NELRNKAVAGLEVRLAQGAIA---KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R+ +  GLE RLA        +      Y +RL+FE+N I +M F GYFLIV DFI 
Sbjct: 310  AYFRHASFEGLEERLAHLYPNEALRDQKRPVYVERLEFEINTILKMGFPGYFLIVGDFIN 369

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 370  WAKNNGCPVGPGRGSGAGSLVAYALRITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQS 429

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV++KYGH+ V+QI+TFG++ A+AA+RDVGR L  PY   D + KLIPN P  
Sbjct: 430  NRDRVIDYVKDKYGHDAVSQIVTFGTMAARAAIRDVGRVLDFPYGFCDGISKLIPNKPGQ 489

Query: 486  PVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             V+LQ              A+  +    E    +  V  LL++++KLEGL R+   HA G
Sbjct: 490  AVTLQLLPAERKKNDKMVYALEAEPVLAERERKEEDVHTLLDLARKLEGLTRNVGMHAGG 549

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I    L+   P+Y    S   V+QF+   +E  GL+KFDFLGL TLT+L+ + +F+ Q
Sbjct: 550  VLIAPGKLTDFCPLYLQPGSGSAVSQFDKNDVEAIGLVKFDFLGLATLTILEIAREFIIQ 609

Query: 592  RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R           +  +D   Y L     T  +FQ ES GM++ L+  +P+ +ED+IA+ +
Sbjct: 610  RHPSQKDFKFENLSLNDARVYALFAEGNTEAVFQFESIGMQRMLKDAKPNRLEDLIAMNA 669

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  Y  RK GKE      P + P+L+ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 670  LYRPGPMDLIPTYIARKQGKEVPEYPDPRVKPILEETYGIMVYQEQVMQTAQILGGYSLG 729

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK ++EM  Q++ F  GA  NG+++  A  +F+L+ KFA YGFNKSH+AA
Sbjct: 730  GADMLRRAMGKKDEKEMASQRDIFRKGAGVNGLTQEKADEVFDLMEKFAGYGFNKSHSAA 789

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+++Y TAW+K HY  EF AA+MT+EMD+ +K+K    DA++  IQ   P +N     F
Sbjct: 790  YALLAYHTAWLKVHYTAEFFAANMTVEMDDTDKLKILFGDAQKMGIQFESPDINRGDYRF 849

Query: 829  K-VGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886
            + +    + Y L A+KG G      I+ A  +  PF SL DFC RVD  KLN+R +E+L+
Sbjct: 850  EPISATAVRYGLGAVKGTGQQAIAAIVAARQEGGPFTSLYDFCVRVDRSKLNKRTVEALI 909

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
              GA D    +R +LL S+D   ++A   E N         +      + +  L +    
Sbjct: 910  KGGAFDNLHLNRAELLASVDRAFEFAAATEANANQGGLFDMSDSHAASTQEPPLVEAVPF 969

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                R   E+  +GFY SGH  D  +  +R+   +  E+ + +       LAA++   + 
Sbjct: 970  GVKARLVLEKTAIGFYLSGHLFDEVEAEVRQFAKRKIEDLIDSREPQ--LLAAILSDLRV 1027

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEA----NFF 1032
                +G  I +    +     EA      F
Sbjct: 1028 INGNRGKLIIF-KLDDKTDVLEASVDETVF 1056


>gi|325300436|ref|YP_004260353.1| DNA polymerase III, alpha subunit [Bacteroides salanitronis DSM
            18170]
 gi|324319989|gb|ADY37880.1| DNA polymerase III, alpha subunit [Bacteroides salanitronis DSM
            18170]
          Length = 1265

 Score =  964 bits (2493), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/1147 (31%), Positives = 580/1147 (50%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-------- 61
             FVHL VH+ YS+L+G  S++ ++DK  A+    IAITD  ++F   EF           
Sbjct: 3    DFVHLHVHTQYSILDGQASISRLVDKAMANGMKGIAITDHGDMFGIKEFFNYVNKKNGGT 62

Query: 62   -------------------------------------ACAAGIQPIIGCQLDIDMQDNLK 84
                                                 A     +PIIGC++ +      +
Sbjct: 63   NGEIKDLKKKVAALESGKVESENPEADIAACKEQIEVAKKKLFKPIIGCEMYVA---RNR 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            +T++   P      +++L    +GY  LI+LVS+ +         R   + L++   EGL
Sbjct: 120  LTDKNGKPDQGGYHLIVLAKNLKGYHNLIKLVSKAWTQG-FYMRPRTDRAELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-----------YD 193
            I+ +    G + R         AE+ +  +K LFG+  Y+ LQRH+              
Sbjct: 178  IVCSACLGGEVPRRITAGQFAEAEEAIQWYKNLFGEDYYLELQRHKATVPRANHETYKLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                 ++++ A  +++ LV TN+  F+ EE+ EAHD L+ ++ S  +   +R   T   +
Sbjct: 238  EVVNKKLIEYARKYDIKLVCTNDVHFVDEENAEAHDRLICLSTSKDLDDPNRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K R EM +IFSD+PEAL NT E+  +  F    HAPI+P F   E    ++E       
Sbjct: 298  MKTREEMNAIFSDVPEALVNTCEVCDKVEFYSIDHAPIMPTFSIPEEFGTEEEYRKRYSE 357

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L   A  G   R    
Sbjct: 358  KDLFDEFTQDENGNVVMSEADAKAKIERLGGYEKLYRIKLEADYLAKLAYEGARRRYGAD 417

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                     + ++R+ FEL+++  M F GYFLIV DFI  A+   ++ VGPGRGS AGS 
Sbjct: 418  L------TDEVKERIKFELHIMKTMGFPGYFLIVQDFIAAARNQLDVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA 
Sbjct: 472  VAYCLGITQIDPIKYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRLCKLIP+  P   ++L  AIA     + A +
Sbjct: 532  IITYGTMATKLAIKDVARVQKLPLSESDRLCKLIPDKIPDKKLNLPNAIAYVPELQAAEV 591

Query: 504  -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558
             +DP +   ++ ++ LEG  R+   HA G +I    ++  VP+     ++    + VTQ+
Sbjct: 592  SSDPVLRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE+ GLIK DFLGLKTL++++++++ +   +G+++++  IP DD  TY L     T
Sbjct: 652  EGSVIEETGLIKMDFLGLKTLSIIKEAIENIRHSKGIELNIDEIPIDDPATYQLYGEGQT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  ++P   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELEPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPI 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGK 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG        I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA+M+  + 
Sbjct: 832  KNGHDPKTLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAATMSRNVS 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHI-ME 855
            N+ +I K   + +   I+++ P VN   + F V  +    + L AIKGVG +  + I +E
Sbjct: 892  NITEITKLMDECKAMGIRVLGPDVNESSMKFSVNYHGDIRFGLGAIKGVGESAVQSILVE 951

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS--------LDN 907
               +  F ++ DF  RV+    NR+ +E+L  AG  D F   + +            ++ 
Sbjct: 952  REKNGVFKNIFDFVQRVNLSACNRKNIENLALAGGFDSFSGIKREDFFVKNAKDETFVEI 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E+        +      +   R   E+ ++G Y S HP
Sbjct: 1012 LVRYGNRYQVDKAAAVNSLFGGEQAVEIATPEIVHAPAWSDLERLNKERELVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  IL  +      +      ++ +++ L  +V   ++  TR G   G     + + 
Sbjct: 1072 LDEYAVILENVCNARMSQLADLTPLQNHDLTLGGVVTGVREGYTRTGKPYGVAKLEDYSG 1131

Query: 1026 EYEANFF 1032
              +  FF
Sbjct: 1132 TADFAFF 1138


>gi|300784068|ref|YP_003764359.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32]
 gi|299793582|gb|ADJ43957.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32]
          Length = 1195

 Score =  964 bits (2493), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/1082 (31%), Positives = 546/1082 (50%), Gaps = 67/1082 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             + SFVHL VH+ YS+L+GA  +  +  + A    PA+ +TD  N++   EF Q++   G
Sbjct: 2    SNDSFVHLHVHTEYSMLDGAAKIAPLFAEAARLGMPAVGMTDHGNMYGGDEFYQQSKKHG 61

Query: 67   IQPIIGCQLDIDMQDNLKMT-----------------NQGKTPFPTVPSIVLLVSTAEGY 109
            ++PIIG +  I  +                           +       + +L   A G 
Sbjct: 62   LKPIIGIEAYIAPESRFHKKPVFWGQSNQRGSDELGEGGDVSGAGAYTHMTMLAQNATGL 121

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            + L +L S   +     +  R+    + E  + G+I  TG  SG +         + A +
Sbjct: 122  RNLFKLSSLASMQG-YYRKPRMDRELIAENHS-GIIATTGCPSGEVQTRLRLGQKEAAIQ 179

Query: 170  RLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                +K +F  D  ++ L  H    +R     ++++    +L  +ATN+S +++++  + 
Sbjct: 180  AASDYKDIFGADNFFLELMDHGLPIERSVREGLLEVGRLLDLKPIATNDSHYVTKDQADT 239

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFIL 285
            H  L+ V     ++   R +   D +YLK+ +EM   +  ++P A + T+ IA R     
Sbjct: 240  HSALLCVQAGKTLNDPTRFKFDGDGYYLKSAAEMREYWDKEVPGAADTTLMIAERVESYE 299

Query: 286  QV--HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
             V  H   LP F   E  D        LR +   GL+ R   G        + Y +R++ 
Sbjct: 300  DVYSHKDRLPFFEVPEGYDQG----GWLREEVQRGLKWRFPDGVPD-----EYYNERIEI 350

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL+VI    F  YFLIVAD I +A+K  I VGPGRGS AGS+ AY L IT++DP+   LL
Sbjct: 351  ELDVIIGKGFPAYFLIVADLISYARKVGIRVGPGRGSAAGSLVAYVLGITNLDPIPQKLL 410

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R+SMPD DIDF   RR E+IRY  +KYG ++VAQ+ITFG+++ KAA++D  R
Sbjct: 411  FERFLNPERVSMPDIDIDFDDRRRGEMIRYATDKYGSDKVAQVITFGTIKTKAAIKDSAR 470

Query: 464  AL--QMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLL 512
                Q  Y+  D++ K +P    A  + L  I D+           R     D     + 
Sbjct: 471  VHFGQPGYAIADKISKALPPPIMAKDIPLSGIVDNKHERYGEAAEVRALVETDDECKTIF 530

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            E ++ LEGL R+A  HA  +++   PL+  +P+++       +T ++    E  GL+K D
Sbjct: 531  ETARGLEGLIRNAGVHACAVIMSCDPLTDAIPLWQR-DDGSIITGWDYPSCEAIGLLKMD 589

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGL+ LT++  ++D +   RGV VDL  +  DD ETY LL    TLG+FQL+   MR  
Sbjct: 590  FLGLRNLTVIGDAIDNIKANRGVDVDLDTLGVDDPETYKLLARGDTLGVFQLDGGPMRDL 649

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLID----PMLKET 685
            L  M+P   +DI+A+ +LYRPGP+       Y +RKN ++K+  IHP +D     +L +T
Sbjct: 650  LRRMEPTVFDDIVAVGALYRPGPMGMNAHNDYADRKNNRQKVKPIHPELDEPLREILADT 709

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN-----G 740
             G+I+YQEQ+M I Q ++GY++  ADVLRRAMGKK KE +DK+ E F +G   +     G
Sbjct: 710  YGLIVYQEQIMHIGQKVAGYTMGRADVLRRAMGKKKKEVLDKEYEGFEAGMRASDLRPGG 769

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             S      +++ +  FA Y FNKSHAAAY +ISY TA++K ++  E++AA +T   DN +
Sbjct: 770  FSPEAIKALWDTILPFAGYAFNKSHAAAYGLISYWTAYLKANFRAEYMAALLTSVGDNKD 829

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD- 859
            K   +  + R+  I+++PP VN   + F    + I + L A++ VG      I++   + 
Sbjct: 830  KSAVYLSECRRLGIKVLPPDVNESALRFAAVGDDIRFGLGAVRNVGANVVESIIKTREEK 889

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
              + S  DF  + +    N+RV+ESL+ AG  D  G++R+ ++Q  ++  +    +++  
Sbjct: 890  GKYASFTDFLDKSELVACNKRVIESLIKAGGFDSLGHTRLSMIQVHEDAVEAVVPLKRQE 949

Query: 920  TNKHENIFAHEKGTFSDKITLEKF-------SVENSSVRFENEQRVLGFYFSGHPLDVYK 972
                 ++F           +                      E+ +LG Y S HPLD  +
Sbjct: 950  AMGQFDLFGFGGDEGEAAPSSSPLAHLKFGEEEYPRKQLLAYEREMLGLYVSAHPLDGAE 1009

Query: 973  PILRKMGIKGYEESVAT-IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             ILRK   K     +    +   + ++ ++ S +++  +KG      T  +     E  F
Sbjct: 1010 RILRKHAPKPIASILNDPPKEGELVISGLITSLERRVNKKGEPWAICTVEDMDASLEVLF 1069

Query: 1032 FP 1033
            FP
Sbjct: 1070 FP 1071


>gi|317178164|dbj|BAJ55953.1| DNA polymerase III subunit alpha [Helicobacter pylori F16]
          Length = 1211

 Score =  964 bits (2493), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1078 (34%), Positives = 585/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLSFEDDASYFAYKAREGLKERLVLVPKEKH---DQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIGVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L AIKGVG    ++I+E     
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGEPEKKIVFGLGAIKGVGGEPIKNIIEERTKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|317010167|gb|ADU80747.1| DNA polymerase III subunit alpha [Helicobacter pylori India7]
          Length = 1211

 Score =  964 bits (2493), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1078 (34%), Positives = 587/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNERLDFEDDASYFAYKAREGLKERLILVPKEKH---DQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L A+KGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F   +G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMEGGTKEQVILDMTDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|314967462|gb|EFT11561.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL037PA1]
          Length = 1190

 Score =  964 bits (2492), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1079 (31%), Positives = 541/1079 (50%), Gaps = 63/1079 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDMQDNLKMT-----------------NQGKTPFPTVPSIVL 101
                    I+PIIG +  +                           +  +       + +
Sbjct: 60   YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                +EG   L  L S            R+    L    + G+I  TG  SG +      
Sbjct: 120  WAKDSEGLHNLFRLSSLASYEG-YYMKPRMDRE-LMGQYSGGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ +F  +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
                   +V   +  +P+F   E +     +E+ LR K   GL+ +            ++
Sbjct: 298  EMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------PKE 347

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
              +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+
Sbjct: 348  VLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAIN 407

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKA
Sbjct: 408  PLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKA 467

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPS 507
            A++D  R L  P++  D++ K +P D     V L  I D S         FR+    +P 
Sbjct: 468  AVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPD 527

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            V +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ G
Sbjct: 528  VAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMG 587

Query: 568  LIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ +
Sbjct: 588  LMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGT 647

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DP 680
             MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D 
Sbjct: 648  AMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDE 707

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G
Sbjct: 708  ILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHG 767

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +
Sbjct: 768  YSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKD 827

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-AD 859
            K+  +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A   +
Sbjct: 828  KMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREEN 887

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P      F  +V     N+R++ESL+ AGA D  G+SR  L+   +        +++N+
Sbjct: 888  GPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYEQAVDAVIDIKRNQ 947

Query: 920  TNKHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
             N  +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L 
Sbjct: 948  ANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALE 1007

Query: 977  KMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1008 AESDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|257055090|ref|YP_003132922.1| DNA polymerase III subunit alpha [Saccharomonospora viridis DSM
            43017]
 gi|256584962|gb|ACU96095.1| DNA polymerase III, alpha subunit [Saccharomonospora viridis DSM
            43017]
          Length = 1193

 Score =  964 bits (2492), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1081 (33%), Positives = 556/1081 (51%), Gaps = 67/1081 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             + SFVHL VH+ YS+L+GA  +  + ++ +    PA+ +TD  N++ A +F Q+A  AG
Sbjct: 2    SNDSFVHLHVHTEYSMLDGAAKIAPLFEEASRLGMPAVGMTDHGNMYGADDFYQQAKKAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAEGY 109
            I+PIIG +  +  +                           +       + +L   A G 
Sbjct: 62   IKPIIGIEAYVAPESRFHKKPVFWGNTGQRSTDEFGEGGDVSGGGAYTHMTMLAENATGL 121

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            + L  L S   +     +  R+    + E   EG+I  TG  SG +           A +
Sbjct: 122  RNLFTLSSLASMEG-YYRKPRMDRELIAEYA-EGIIATTGCPSGEVQTRLRLGQKDEALQ 179

Query: 170  RLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                ++ +F  +  ++ L  H    +R     ++++     L  +ATN+S +++++  E+
Sbjct: 180  AAADYRDIFGAENFFLELMDHGLAIERSVREGLLEIGKKLGLQPLATNDSHYVTKDQAES 239

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFIL 285
            H  L+ V     +S   R +   D +YLK+  EM   +  ++P A ++T+ IA R     
Sbjct: 240  HSALLCVQSGKTLSDPTRFKFDGDGYYLKSAQEMREYWDTEVPGATDSTLLIAERVQSYE 299

Query: 286  QV--HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            +V  H   +P+F   E       EE+ L ++ + GL  R   G          Y +R +F
Sbjct: 300  EVYAHRDRMPKFEVPEG----HTEESWLHHEVMRGLRWRFPDGI------PDGYVERAEF 349

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL VIA+  F  YFL+VAD I +A+   I VGPGRGS AGS+ AYAL IT++DP+  +LL
Sbjct: 350  ELEVIAQKGFPSYFLVVADLINYARSVGIRVGPGRGSAAGSLVAYALGITNLDPIPQNLL 409

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R SMPD DIDF   RR E++RY   KYG +RVAQ+ITFG+++ KAA++D  R
Sbjct: 410  FERFLNPERASMPDIDIDFDDRRRGEMVRYATEKYGADRVAQVITFGTIKTKAAIKDAAR 469

Query: 464  AL--QMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLL 512
                Q  Y+  D++ K +P    A  + L  I D            R     DP V  + 
Sbjct: 470  VHFGQPGYAIADKISKALPPPIMAKDIPLSGIVDPEHERYPEAAEVRSLIENDPEVKTIF 529

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            E ++ LEGL R+A  HA  +++   PL   +P+++       +T ++    E  GL+K D
Sbjct: 530  ETARGLEGLIRNAGVHACAVIMSSEPLLGTIPLWQR-DDGAIITGWDYPSCEAIGLLKMD 588

Query: 573  FLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGL+ LT++  ++D + A RG ++DL  +  DD E Y LL    TLG+FQL+   MR  
Sbjct: 589  FLGLRNLTVIGDAIDNIRANRGEEIDLDRLGLDDPEAYKLLGRGDTLGVFQLDGGAMRDL 648

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDP----MLKET 685
            L  MQP   EDIIA+++LYRPGP+       Y +RKNG+++I  IHP ++     +L ET
Sbjct: 649  LRRMQPTGFEDIIAVLALYRPGPMGMNAHNDYADRKNGRQQIKPIHPELEEPLKDILAET 708

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+I+YQEQ+MQIAQ ++GYS+  ADVLRRAMGKK KE ++K+ E F +G  +NG S   
Sbjct: 709  YGLIVYQEQIMQIAQKVAGYSMGRADVLRRAMGKKKKEVLEKEFEGFRAGMKENGFSDEA 768

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               +++ +  FA Y FNKSHAA Y ++SY TA++K +YP E++AA +T   DN +K   +
Sbjct: 769  IQALWDTILPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAALLTSVGDNKDKSAVY 828

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDS 864
              + R+  I+++PP VN     F    + I + L AI+ VG      I+        + S
Sbjct: 829  LSECRRLGIRVLPPDVNESGRRFAAVGDDIRFGLGAIRNVGANVVDSIIATREKKGKYTS 888

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              DF    +    N+RV+ESL+ AGA D FG++R+ +++  ++       +++       
Sbjct: 889  FTDFLDSSELVVCNKRVIESLIKAGAFDSFGHTRLSMMRVHEDAVDAVVPLKRQEAMGQF 948

Query: 925  NIFAHEKGTFSDKITLE-----------KFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
            ++F    G       ++                    +   E+ +LG Y S HPLD  + 
Sbjct: 949  DLFQGFGGGGDGDTAVQTASSPLAHLKFDDEEYPRKQKLAYEREMLGLYVSAHPLDGAER 1008

Query: 974  ILRKMGIKGYEESVAT-IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ILRK   +     +A   +   I +A ++ S +++  +KG      T  +     E  FF
Sbjct: 1009 ILRKHAKRPIAAILADPPKEGEIEIAGLITSLERRVNKKGEPWAICTVEDMDASLEVLFF 1068

Query: 1033 P 1033
            P
Sbjct: 1069 P 1069


>gi|256423694|ref|YP_003124347.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
 gi|256038602|gb|ACU62146.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
          Length = 1214

 Score =  964 bits (2492), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1095 (32%), Positives = 566/1095 (51%), Gaps = 87/1095 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-------- 62
            F HL VH+ YSLL+GA  + ++  K  A  QPA+AITD  N+F A +F  +A        
Sbjct: 3    FSHLHVHTQYSLLDGAADIKSLYKKAMASNQPALAITDHGNMFGAFQFVAEAYNNRLNPE 62

Query: 63   ----CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
                    ++PI+GC+  + +++  K     +        ++L     EGY+ LI+L S 
Sbjct: 63   DPKDKRLKVKPIVGCEFYV-VENRFKRAFTREEKDIRNHQVLL-AKNDEGYRNLIKLCSL 120

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             Y+     +  RI    + +   +GLI  T      + RA      +  E+    +  +F
Sbjct: 121  GYIEGLYGKYPRIDKELILQYH-KGLIATTCCLGASVPRAILKKGEEAGEEEFKWWLDIF 179

Query: 179  GDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            G+  YV LQRH   ++ + ++ +++ A  H + ++A+N+S ++ + D  AHD+L+ +   
Sbjct: 180  GEDYYVELQRHGIPEQEKVNESLIKFASKHNVKIIASNDSHYVDQADANAHDILLCINTG 239

Query: 238  TV---------------VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
                             +  K         Y K   EM ++F DLP+A++NT EI  +  
Sbjct: 240  EKKSTPTMKDFSDDDVSMKNKRFAFYNDQFYFKTTEEMTALFQDLPQAIDNTNEIVDKVE 299

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
             +      +LP F           ++  LR+  + G   + A+          +  +R++
Sbjct: 300  LLDLKRDILLPNFPIPP---PFLTQDQYLRHITMEGAHKKYAEVTA-------EVEERIN 349

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            FEL+VI  M F+GYFLIV+DFI+  +   + +GPGRGS AGS  AY + IT+IDP++++L
Sbjct: 350  FELSVIENMGFAGYFLIVSDFIKAGRDLGVFIGPGRGSAAGSAVAYCIGITNIDPIKYNL 409

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R SMPD D DF  + R +VI YV NKYG  +VAQIIT+G++ AK +++DV 
Sbjct: 410  LFERFLNPERKSMPDIDTDFDDEGRQKVIDYVVNKYGKNQVAQIITYGTMAAKMSIKDVA 469

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSL---------------------QAIADDSRFREA 501
            R + +P  + + L K++P+ P   +                       + + +  R RE 
Sbjct: 470  RVMDLPLVESNMLAKMVPDKPGIQLDRIFNAPIDEGEKSLAEKEGLGPEDLENVKRLREL 529

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
                     +L  +  LEG  R+   HAAGI+I  + L  L+P+     SDL VTQF   
Sbjct: 530  IKGQDLQGEVLREACVLEGSVRNTGIHAAGIIIAPKDLYDLIPVSTAKDSDLLVTQFEGS 589

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
             IE AG+IK DFLGLKTLT+++ +L+ +    G+ + +  IP DD +TY L     T   
Sbjct: 590  IIESAGVIKMDFLGLKTLTIIKGALELIRTNHGIDISIDDIPLDDAKTYELYQKGETNAT 649

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ ES+GM++ L  ++PD  +D+IA+ +LYRPGP++ I ++  RK+G E+ V     ++ 
Sbjct: 650  FQFESAGMQKYLRELKPDRFDDLIAMNALYRPGPLEYIPLFIRRKHGLEETVYDLAEMEE 709

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
             L +T G+ +YQEQVM ++Q L+ +S  +ADVLR+AMGKK K  +DK K++F+ G + NG
Sbjct: 710  YLNDTYGITVYQEQVMLLSQKLANFSKGDADVLRKAMGKKQKAVLDKMKKQFMEGCAANG 769

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
                +   ++     FA Y FNKSH+  YA ++YQTA++K HYP E++AA +     N+E
Sbjct: 770  HDLKVCDKVWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYPAEYMAAVLN-NASNIE 828

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD 859
            KI  F ++A++  I ++PP VN     F V    +I + LA +KGVG     +I+E    
Sbjct: 829  KITFFMEEAKRMGIDVLPPDVNESFKGFAVNKQGQIRFGLAGLKGVGEAAVENILEERQK 888

Query: 860  KP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ--------SLDNIQ 909
               + ++ +   RV+ + +N++ LE+L  +GA DCF    R Q            LD I 
Sbjct: 889  GSNYKNIFEMIKRVNQRAVNKKSLEALAMSGAFDCFPELHRAQYFHKPDNDNTTGLDKIV 948

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            K+ Q V         ++F  +     +   +         ++  NE+ V G Y SGHPLD
Sbjct: 949  KFGQQVSAGAATTMSSLFGADDMPEVEPPKIPPCDPWPLILKLNNEREVTGIYISGHPLD 1008

Query: 970  VYKPILRKMGIKGYEESVA------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             Y+   R   +   +E V             + R  N RLA  V   Q++ +R   + G 
Sbjct: 1009 DYRFESRYYNMNTVQELVEYQADLQAPGNAKSGRERNFRLAVYVTGAQERISRNNRQFGI 1068

Query: 1018 VTFSEPAKEYEANFF 1032
            +T  + + ++E   +
Sbjct: 1069 MTIEDYSGKFEFALW 1083


>gi|328907421|gb|EGG27187.1| DNA polymerase III subunit alpha [Propionibacterium sp. P08]
          Length = 1190

 Score =  964 bits (2492), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1079 (31%), Positives = 540/1079 (50%), Gaps = 63/1079 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDMQDNLKMT-----------------NQGKTPFPTVPSIVL 101
                    ++PIIG +  +                           +  +       + +
Sbjct: 60   YDGDQNPLVKPIIGIEAYVAPSTRTSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                 EG   L  L S            R+    + +    G+I  TG  SG +      
Sbjct: 120  WAKDPEGLHNLFRLSSLASYEG-YYMKPRMDRELMSQYPD-GIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ +F  +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLRLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDYPEACDNTLLLT 297

Query: 279  RRCSFILQV--HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
                   +V  H   +P+F   E +     +E+ LR K   GL+ +            ++
Sbjct: 298  EMIGSYDEVFKHVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------PKE 347

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
              +RL+ EL+VI  + FS YFLIV+D    A+   +PVGPGRGS AGS+ AY   I  I+
Sbjct: 348  VLERLETELSVIEPLGFSSYFLIVSDICSAARSMGVPVGPGRGSAAGSLVAYLTGIIAIN 407

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV  KYG E  +Q+ TFG ++AKA
Sbjct: 408  PLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTYKYGAEYTSQVNTFGKIKAKA 467

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPS 507
            A++D  R L  P+S  D++ K +P D     V L  I D S         FR+    +P 
Sbjct: 468  AVKDANRILGYPFSLGDKITKAMPPDVMGKGVPLDKIFDPSHERYGEGQEFRQLVADNPD 527

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            V ++++ ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ G
Sbjct: 528  VAKVVDTARGLEGLIRGTGVHACAFILSSAPLLDLVPMHKRDKDGMIIAGFAYPQLEEMG 587

Query: 568  LIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGL+ L ++   +  +   RG+ VDL  +  DD  TY +L    TLG+FQL+ +
Sbjct: 588  LMKMDFLGLRNLGIMDHCIKIIKDNRGIDVDLKDLALDDTATYEMLARGDTLGVFQLDGT 647

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DP 680
             MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D 
Sbjct: 648  AMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDE 707

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G
Sbjct: 708  ILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHG 767

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +
Sbjct: 768  YSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKD 827

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-AD 859
            K+  +  D R  +I ++PP VN   ++F      I + L A++ VG      I+ A   +
Sbjct: 828  KMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREEN 887

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P      F  RV     N+R++ESL+ AGA D  G+SR  L+   +        +++N+
Sbjct: 888  GPAPDFFTFLDRVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAIYEQAVDAVIDIKRNQ 947

Query: 920  TNKHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
             N  +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L 
Sbjct: 948  VNGQDDLFGMGDDSQPSQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALE 1007

Query: 977  KMGIKGYEESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    E V           +A MV    ++ T+ G     VT  +         FP
Sbjct: 1008 AESDISVAELVNPEAHHEGRYTVAGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|227484665|ref|ZP_03914981.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
 gi|227237385|gb|EEI87400.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
          Length = 1148

 Score =  964 bits (2492), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1057 (33%), Positives = 572/1057 (54%), Gaps = 60/1057 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+G   ++ +LD+       ++AITD   ++  +EF ++A   GI+PI
Sbjct: 5    FTHLHLHTEYSLLDGFTRIDELLDRCKELGMDSVAITDHGQMYGVIEFYKQAQKRGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +D+       +        ++LL     GY+ L+++VS  Y+ +      R
Sbjct: 65   IGCEVYVSERDHKIKDPTNRR----YYHLILLAENNTGYKNLVKIVSEAYV-NGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            +   +++   TEGLI L+   +G +++         AE+  L ++K F     ++ +Q H
Sbjct: 120  VSFDFIKN-HTEGLIALSACLNGEVNQRILEGDMGGAEETALKYEKAFGKGSFFLEVQDH 178

Query: 190  RGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
               ++ + +Q ++ L     + +VATN+  ++++ED    DVL+ +    ++  ++R   
Sbjct: 179  GMAEQKKVNQGIKYLHKKLGIEMVATNDVHYINKEDSYYQDVLLCIQTGALIKDENRMRM 238

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+   M +IF D   A+ENT +IA RC   ++ H P LP + +          
Sbjct: 239  PTREFYLKDADTMATIFKDYERAIENTRKIADRCQVEIKFHQPHLPYYTKVPE---GLTN 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + L+     GL  +  Q          +  +R   E++VI  M +  YFLIV DF+ +A
Sbjct: 296  LDYLKLLVNDGLAQKYDQ-------VTDEIVKRAKMEIDVINSMGYVDYFLIVWDFVNYA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +KN+I VGPGRGS AGS+ +YAL IT IDPL+++L+FERFLNP+R+SMPD DIDF    R
Sbjct: 349  RKNDIAVGPGRGSAAGSLVSYALDITQIDPLKYNLIFERFLNPERVSMPDIDIDFDYVLR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D+V+ YV + YG + V+QI+TFG +QA+ A+RDVGR L + Y +VD + K IP      +
Sbjct: 409  DKVVEYVNDLYGRDHVSQIVTFGRMQARNAIRDVGRVLDIAYGKVDTIAKQIPATIGMTI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+ +   FR +   D    RL++ ++KLE L RH S HAAG+VI   PL+ ++P+  
Sbjct: 469  D-KALVESDAFRASYEKDAEGKRLIDTAKKLEALPRHTSIHAAGVVISKDPLTDIIPL-- 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
             + +D  V+QF+M  IE+ GL+K DFLGL+ LT+++ ++  + +   V +D+  I  +D 
Sbjct: 526  ALSNDQVVSQFDMTEIEELGLLKMDFLGLRNLTVIKDTIKDIKKNYGVDLDIRKIDVNDV 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
                      T+G+FQ ES+GMR  L+ ++P   +D+IA  SL+RPGP+D I  Y + KN
Sbjct: 586  NVIKQFNQAKTIGLFQFESAGMRAFLKNLKPTVFDDLIAANSLFRPGPMDEIPKYIHNKN 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              + +  +   + P+L  T G+I+YQEQVMQI Q L+GYSL EAD LRRAM KK    M+
Sbjct: 646  NPDDVTFLDEKLKPILGVTYGIIVYQEQVMQIVQQLAGYSLGEADNLRRAMSKKKMAVME 705

Query: 727  KQKERFISGA------------SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            + ++ FI+G              +NG+ + +A  I++ +  FA Y FNKSH+AAY++++ 
Sbjct: 706  ENRDVFINGKVGEDGKVIIPGAVRNGVDRQVANTIYDEMISFAKYAFNKSHSAAYSLVAV 765

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YP E++A  ++  MD   K+  +  + ++  I+++ P +N     FKV D +
Sbjct: 766  QTAYLKHYYPEEYMANLISSVMDQSGKLYSYVSETKRLGIEVLAPDINKSYGSFKVADKK 825

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890
            I + L+ IK VG      I++A      F + ++F  RV   D + LN++ +ESL+ AGA
Sbjct: 826  IIFGLSGIKNVGLNLIDSIVKARDEGGAFTNFKNFLERVEDYDPRALNKKGIESLIKAGA 885

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D  GY+R  L+   +          K       N+           I +         V
Sbjct: 886  FDSLGYTRSSLMAIFEKAINTVHDNNKINVTGQINLLDMASAKEDTDIDMPNIDEYPKKV 945

Query: 951  RFENEQRVLGFYFSGHPLDV--------------YKPILRKMGIKGYEESVATIRGNNIR 996
            + + E+ VLGFY S HPL                Y+  L +  +           G  + 
Sbjct: 946  KLKLEKEVLGFYISEHPLSERSLALSNIVNFTTNYREELGENRLASL-------DGKFVT 998

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +A ++ +K++  T+K   + + +  +     E   FP
Sbjct: 999  MAGIINNKKELTTKKRDLMAFASLEDMYGNIEMVIFP 1035


>gi|317179636|dbj|BAJ57424.1| DNA polymerase III subunit alpha [Helicobacter pylori F30]
          Length = 1211

 Score =  964 bits (2492), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1078 (34%), Positives = 585/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFEDDASYFAYKAREGLKERLVLVPKEKH---DQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L AIKGVG    ++I+E     
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERTKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|308185224|ref|YP_003929357.1| DNA polymerase III subunit alpha [Helicobacter pylori SJM180]
 gi|308061144|gb|ADO03040.1| DNA polymerase III subunit alpha [Helicobacter pylori SJM180]
          Length = 1211

 Score =  964 bits (2491), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1078 (34%), Positives = 586/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +++  +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKEDKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLKG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A++    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFEDDASYFAHKAREGLKERLILVPKEKH---DQYQERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWYKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L A+KGVG    ++I+E     
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERTKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F   +G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMEGGIKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|295698553|ref|YP_003603208.1| DNA polymerase III alpha subunit [Candidatus Riesia pediculicola
            USDA]
 gi|291157151|gb|ADD79596.1| DNA polymerase III alpha subunit [Candidatus Riesia pediculicola
            USDA]
          Length = 1177

 Score =  964 bits (2491), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1060 (38%), Positives = 622/1060 (58%), Gaps = 46/1060 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F+HL V S YS+ +G   ++ ++D+    + P+IAITD  NL   ++F + + +
Sbjct: 1    MNKEPKFIHLHVRSDYSMSDGLSRIDILIDRALELKMPSIAITDFVNLHGMIKFYELSRS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PII          ++ + +  K  F T   + +L+   +GYQ L++L+S  Y    
Sbjct: 61   VGIKPII--------GSDVIVQDLSKNGFETYYELTILIKDHKGYQNLVQLISLAYRDGN 112

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL  +  EGLI+L+GG SG I +    N+    +K L  +   F +  Y+
Sbjct: 113  STMGPIIKKDWLI-LYREGLILLSGGISGDIGKNILENNLSDLKKNLNFYGTYFHNHYYM 171

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV--VS 241
             + R     +     +V+QL+   ++P+VATNN  F+ + D+ AH + +A+ +  V   S
Sbjct: 172  EITRTGKIEEEKYIHKVIQLSKKKKIPIVATNNVRFVFKNDFFAHKIRVAIQNGFVLSKS 231

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            +KD  R +   YL++  EM  +F D+PE+L+NTVEIA+RC+        +LP F  K   
Sbjct: 232  RKDDLRYSDQQYLRSSKEMNDLFRDIPESLKNTVEIAKRCNLQFSFSNFLLPVFPIKNV- 290

Query: 302  DIQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+     A +GLE RL         +      Y QRL  E+N+I +M FSGYFL
Sbjct: 291  ----RIEDFFVFSARSGLEERLKKIYPDPSIRKRKRDKYDQRLSEEINIIHQMGFSGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +F+ W+K+ NIPVGPGRGSGAGS+ AY+L IT++DP++F+L+FERFLN +R+SMPDF
Sbjct: 347  IVMEFVNWSKRKNIPVGPGRGSGAGSLVAYSLKITELDPIKFNLVFERFLNKERISMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC ++RD VI +V  KYG + V+QII FG++ A++ ++DVGRA+  PYS  +R+ KL
Sbjct: 407  DIDFCVEKRDLVIEHVIKKYGKDFVSQIIAFGTMTARSVVKDVGRAMCYPYSFTNRISKL 466

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   +   A++ + + ++    +  V  LL+ ++KLEG+ R+ S HA GIVI  + 
Sbjct: 467  IPFDPGMTIE-HALSSEKKLKKLYENEEEVKILLDTAKKLEGIVRNVSKHAGGIVISPKK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA------QR 592
            + +  P+Y D      +T  +   IEK GL+KFDFLGLKTLT+++ +++ +       ++
Sbjct: 526  IIKYFPLYYDSIGKNSLTHLDKDDIEKIGLVKFDFLGLKTLTIIRDTIEIINFHSSDLKK 585

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                DL+ I  +D  ++ LL +  T+ IFQLES GM+  +  +QPDC EDII+L++L+RP
Sbjct: 586  ITLSDLNSISLNDPMSFDLLRSAETVAIFQLESRGMKDLIRRLQPDCFEDIISLIALFRP 645

Query: 653  GPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +   + NRKNG EKI        H L+ P+LK T G+I+YQEQVMQIAQ+L+GY
Sbjct: 646  GPLKSGMISNFINRKNGLEKISYPEEECQHDLLKPILKNTYGIILYQEQVMQIAQILAGY 705

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL EAD+LRRAM KK K+EM  Q++ F     K GI + +A  +F+L+ KF+ YGFNKSH
Sbjct: 706  SLGEADILRRAMSKKNKKEMKDQRKNFERRCLKRGIDREMASRMFDLMEKFSGYGFNKSH 765

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA+ISYQT W+K+HYP EF+AASMT EM+N++KI +   + R+  I+I+PP+VN   
Sbjct: 766  SAAYALISYQTLWLKSHYPSEFIAASMTSEMNNLDKIFELVNECRRLKIKILPPNVNQGM 825

Query: 826  VDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLE 883
              F+V  N  I Y + AIKG+G +    ++ +      F  + DFC R++ K +NR+ LE
Sbjct: 826  YFFQVNRNGEIIYGMGAIKGIGKSVIEKMISSRNKYGKFLDIFDFCRRINVKTVNRKTLE 885

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
             L+ +G+ DCFG  R ++L  L +  K     +K +++   ++F  +         ++  
Sbjct: 886  KLILSGSFDCFGQKRFEMLHILKDALKLTAQEKKVQSSGQIDMFETDIRKNRSIREIDDL 945

Query: 944  SVEN-SSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVAT--IRGNNIRLAA 999
            S +    + F  E+  LGFY + HP   Y+  +      K   + ++    + +++ +  
Sbjct: 946  SRKRLKRMVFYGERDTLGFYLTNHPTSFYRSEISYYTRGKNIRDILSHSFSQESSLTVVG 1005

Query: 1000 MVVS---KQQKKT---RKGSRIGWVTFSEPAKEYEANFFP 1033
             + S    + K +   R    IG  T S+ +   E   FP
Sbjct: 1006 SISSCRLVKCKTSNFFRNSKTIGICTLSDFSGNLEIVLFP 1045


>gi|208435328|ref|YP_002266994.1| DNA polymerase III alpha-subunit [Helicobacter pylori G27]
 gi|208433257|gb|ACI28128.1| DNA polymerase III alpha-subunit [Helicobacter pylori G27]
          Length = 1211

 Score =  964 bits (2491), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1078 (34%), Positives = 586/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  ++      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A++    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLDFEDDASYFAHKAREGLKERLILVPKEKH---DQYQERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIGVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++ +  ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNDTARQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++ +LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELESILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L A+KGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L  LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLAHLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|308062724|gb|ADO04612.1| DNA polymerase III subunit alpha [Helicobacter pylori Cuz20]
          Length = 1211

 Score =  964 bits (2491), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1078 (34%), Positives = 586/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLSFEDDASYFAYKAREGLKERLVLVPKEKH---DQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            IYQEQVMQI Q + G+SL E+D++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  IYQEQVMQIVQTIGGFSLGESDLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L AIKGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|289428306|ref|ZP_06429993.1| DNA polymerase III, alpha subunit [Propionibacterium acnes J165]
 gi|289158455|gb|EFD06671.1| DNA polymerase III, alpha subunit [Propionibacterium acnes J165]
 gi|313807645|gb|EFS46132.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL087PA2]
 gi|313818682|gb|EFS56396.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL046PA2]
 gi|313825324|gb|EFS63038.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL063PA1]
 gi|314925061|gb|EFS88892.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL036PA3]
 gi|314960402|gb|EFT04504.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL002PA2]
 gi|314978578|gb|EFT22672.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL072PA2]
 gi|314987996|gb|EFT32087.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL005PA2]
 gi|314989806|gb|EFT33897.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL005PA3]
 gi|315084184|gb|EFT56160.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL027PA2]
 gi|315085527|gb|EFT57503.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL002PA3]
 gi|315088416|gb|EFT60392.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL072PA1]
 gi|327331815|gb|EGE73552.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL096PA3]
 gi|327443592|gb|EGE90246.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL013PA2]
 gi|328753347|gb|EGF66963.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL020PA1]
          Length = 1190

 Score =  963 bits (2490), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1079 (31%), Positives = 540/1079 (50%), Gaps = 63/1079 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDMQDNLKMT-----------------NQGKTPFPTVPSIVL 101
                    I+PIIG +  +                           +  +       + +
Sbjct: 60   YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                +EG   L  L S            R+    L    + G+I  TG  SG +      
Sbjct: 120  WAKDSEGLHNLFRLSSLASYEG-YYMKPRMDRE-LMGQYSGGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ +F  +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
                   +V   +  +P+F   E +     +E+ LR K   GL+ +            ++
Sbjct: 298  EMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------PKE 347

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
              +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+
Sbjct: 348  VLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAIN 407

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKA
Sbjct: 408  PLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKA 467

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPS 507
            A++D  R L  P++  D++ K +P D     V L  I D S         FR+    +P 
Sbjct: 468  AVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPD 527

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            V +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ G
Sbjct: 528  VAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMG 587

Query: 568  LIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ +
Sbjct: 588  LMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKSIALDDKTTYEMLARGDTLGVFQLDGT 647

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DP 680
             MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D 
Sbjct: 648  AMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDE 707

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G
Sbjct: 708  ILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHG 767

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +
Sbjct: 768  YSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKD 827

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-AD 859
            K+  +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A   +
Sbjct: 828  KMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREEN 887

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P      F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+
Sbjct: 888  GPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQ 947

Query: 920  TNKHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
             N  +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L 
Sbjct: 948  ANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALE 1007

Query: 977  KMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1008 AESDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|289425264|ref|ZP_06427041.1| DNA polymerase III subunit alpha [Propionibacterium acnes SK187]
 gi|295130708|ref|YP_003581371.1| DNA polymerase III, alpha subunit [Propionibacterium acnes SK137]
 gi|289154242|gb|EFD02930.1| DNA polymerase III subunit alpha [Propionibacterium acnes SK187]
 gi|291376065|gb|ADD99919.1| DNA polymerase III, alpha subunit [Propionibacterium acnes SK137]
 gi|313772287|gb|EFS38253.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL074PA1]
 gi|313792016|gb|EFS40117.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL110PA1]
 gi|313802034|gb|EFS43268.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL110PA2]
 gi|313810152|gb|EFS47873.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL083PA1]
 gi|313812820|gb|EFS50534.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL025PA1]
 gi|313827619|gb|EFS65333.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL063PA2]
 gi|313830483|gb|EFS68197.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL007PA1]
 gi|313833519|gb|EFS71233.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL056PA1]
 gi|313838855|gb|EFS76569.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL086PA1]
 gi|314962672|gb|EFT06772.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL082PA1]
 gi|314973483|gb|EFT17579.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL053PA1]
 gi|314976163|gb|EFT20258.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL045PA1]
 gi|314983815|gb|EFT27907.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL005PA1]
 gi|315077888|gb|EFT49939.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL053PA2]
 gi|315080513|gb|EFT52489.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL078PA1]
 gi|315096030|gb|EFT68006.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL038PA1]
 gi|327326310|gb|EGE68100.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL096PA2]
 gi|327445796|gb|EGE92450.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL043PA2]
 gi|327448221|gb|EGE94875.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL043PA1]
 gi|327453265|gb|EGE99919.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL092PA1]
 gi|328760728|gb|EGF74294.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL099PA1]
          Length = 1190

 Score =  963 bits (2490), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1079 (31%), Positives = 540/1079 (50%), Gaps = 63/1079 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDMQDNLKMT-----------------NQGKTPFPTVPSIVL 101
                    I+PIIG +  +                           +  +       + +
Sbjct: 60   YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                +EG   L  L S            R+    L    + G+I  TG  SG +      
Sbjct: 120  WAKDSEGLHNLFRLSSLASYEG-YYMKPRMDRE-LMGQYSGGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ +F  +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
                   +V   +  +P+F   E +     +E+ LR K   GL+ +            ++
Sbjct: 298  EMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------PKE 347

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
              +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+
Sbjct: 348  VLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAIN 407

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKA
Sbjct: 408  PLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKA 467

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPS 507
            A++D  R L  P++  D++ K +P D     V L  I D S         FR+    +P 
Sbjct: 468  AVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPD 527

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            V +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ G
Sbjct: 528  VAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMG 587

Query: 568  LIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ +
Sbjct: 588  LMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGT 647

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DP 680
             MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D 
Sbjct: 648  AMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDE 707

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G
Sbjct: 708  ILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHG 767

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +
Sbjct: 768  YSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKD 827

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-AD 859
            K+  +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A   +
Sbjct: 828  KMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREEN 887

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P      F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+
Sbjct: 888  GPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQ 947

Query: 920  TNKHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
             N  +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L 
Sbjct: 948  ANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALE 1007

Query: 977  KMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1008 AESDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|315108557|gb|EFT80533.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL030PA2]
          Length = 1190

 Score =  963 bits (2490), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1079 (31%), Positives = 539/1079 (49%), Gaps = 63/1079 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDMQDNLKMT-----------------NQGKTPFPTVPSIVL 101
                    I+PIIG +  +                           +  +       + +
Sbjct: 60   YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                +EG   L  L S            R+    L    + G+I  TG  SG +      
Sbjct: 120  WAKDSEGLHNLFRLSSLASYEG-YYMKPRMDRE-LMGQYSGGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
                 A +    ++ +F  +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFDEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
                   +V   +  +P+F   E +     +E+ LR K   GL+ +            ++
Sbjct: 298  EMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------PKE 347

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
              +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+
Sbjct: 348  VLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAIN 407

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKA
Sbjct: 408  PLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKA 467

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPS 507
            A++D  R L  P++  D++ K +P D     V L  I D S         FR+    +P 
Sbjct: 468  AVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPD 527

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            V +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ G
Sbjct: 528  VAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMG 587

Query: 568  LIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ +
Sbjct: 588  LMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGT 647

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DP 680
             MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D 
Sbjct: 648  AMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDE 707

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G
Sbjct: 708  ILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHG 767

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +
Sbjct: 768  YSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKD 827

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-AD 859
            K+  +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A   +
Sbjct: 828  KMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREEN 887

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P      F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+
Sbjct: 888  GPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQ 947

Query: 920  TNKHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
             N  +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L 
Sbjct: 948  ANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALE 1007

Query: 977  KMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1008 AESDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|330444096|ref|YP_004377082.1| DNA polymerase III subunit alpha [Chlamydophila pecorum E58]
 gi|328807206|gb|AEB41379.1| DNA polymerase III alpha subunit [Chlamydophila pecorum E58]
          Length = 1241

 Score =  963 bits (2490), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1078 (33%), Positives = 587/1078 (54%), Gaps = 63/1078 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S++ L  HS YS+L+    + +++ +  A   PAIA+TD  NLF A++F +      I+P
Sbjct: 2    SWIPLHCHSQYSILDATCPIKDLVAQAKAYDIPAIALTDHGNLFGAIDFYKTCVQQEIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC+  I          + ++       ++LL    +GY+ L  L S  ++        
Sbjct: 62   ILGCECYIAPGSRFDKKKEKRSRV--AHHLILLCKNEQGYRNLCLLSSLAFIEG-FYYVP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L++  +EGL+ L+   S  +  A    S +  EK L  +++LF +  +  +Q H
Sbjct: 119  RIDKELLKK-HSEGLVCLSACLSSSVSEAALE-SEEALEKELRWYQELFKENYFSEVQLH 176

Query: 190  RGYDR----------------------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +  +                          + V++++    +P VATN+  +L  ED++A
Sbjct: 177  KMSEEKIASLPEEWLKQEYYNFIDKQTRVNTAVLEVSKRLGIPSVATNDIHYLHPEDWQA 236

Query: 228  HDVLMAVAHSTV----------VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+ +                + K +   + + Y K+  +M+ +F+D+PE + NT+E+
Sbjct: 237  HEILLNIQSGETIRTAKQNTYIPNPKRKTYSSREFYFKSPQQMLELFADVPEVIANTLEV 296

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQ--GA 327
            A+ C           P ++ +     +   E          LR     GL     +    
Sbjct: 297  AKLCDVHFDFSKKHYPIYLPETLKTKEHYTEQDRYEASALFLRQLCEKGLSKYTPEVLAH 356

Query: 328  IAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
            IAK +  QD     +QR++ E+++I       Y LIV D I WAK +NIPVGPGRGSGAG
Sbjct: 357  IAKKFPNQDPLELVKQRMEMEMSIIIPKGMCDYLLIVWDIIHWAKAHNIPVGPGRGSGAG 416

Query: 384  SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            SV  + L IT+I+P+RF L FERF+NP+R+S PD DID C + R+EVI Y   K+G + V
Sbjct: 417  SVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMEGREEVINYAIEKHGKDNV 476

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
            AQIITFG+++AK A++DVGR L MP S+V+ + K IP   A     +++  D    +  +
Sbjct: 477  AQIITFGTMKAKMAIKDVGRTLDMPLSKVNTIAKHIPELNA--TLAKSLETDPDLHQLYI 534

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563
             D    ++++++ +LEG  R+   HAAG++I   PL+  +P+     S +  TQF+MK  
Sbjct: 535  DDVEAAQVIDMAMRLEGSIRNTGVHAAGVIICGEPLTNHIPVCISKDSSMITTQFSMKPA 594

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            E  G++K D LGLKTLT +  ++  + Q+   ++ +  +P DD  T+ LL    T+G+FQ
Sbjct: 595  ESVGMLKVDLLGLKTLTSIHLAMSAIYQKTQKRLHMETLPLDDKMTFSLLHQGKTMGVFQ 654

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
            +ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++ +L
Sbjct: 655  MESKGMQELAKNLRPDSFEEIIAICALYRPGPMDMIPSFINRKHGKENIDYDHPLMESIL 714

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            KET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  ++M +++ +F   A+ NGI 
Sbjct: 715  KETYGIMVYQEQVMQIAGALANYSLGEGDVLRRAMGKKDHQQMVQERSKFCERAANNGID 774

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D+VEK+
Sbjct: 775  PDIATIIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPQEWLAALLTCDSDDVEKV 834

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKP 861
             K  ++A+  NI I+PP +N     F   +  I ++L AIKGVG +   H+++      P
Sbjct: 835  GKLIREAQSMNIPILPPHINISSNHFVATNEGIRFALGAIKGVGKSFIEHLVKERELHGP 894

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + S++DF  R +  K++++ +ESLV AG  DCF  +R   L SLD +       +K    
Sbjct: 895  YRSIQDFIQRSNFTKISKKNMESLVDAGCFDCFEPNRDLALASLDALYNTVSKEKKEAAT 954

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVR-----FENEQRVLGFYFSGHPLDVYKPILR 976
                 F+ +  +  ++  L   + ++   R      + E+ +LG Y + HP+D ++    
Sbjct: 955  GVMTFFSLD--SMHEQNPLPVAAPKDVVFRTKKELLKKEKELLGIYLTEHPMDAFRETFP 1012

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG-SRIGWVTFSEPAKEYEANFFP 1033
            ++ +  + E      G  IR   ++     K + KG  +   +  S+    YE   +P
Sbjct: 1013 RLSVVPFGEFENLSHGAVIRTVFIIDKITTKFSSKGQKKFAILRVSDGMDSYELPVWP 1070


>gi|313820452|gb|EFS58166.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL036PA1]
 gi|313822742|gb|EFS60456.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL036PA2]
          Length = 1190

 Score =  963 bits (2490), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1079 (31%), Positives = 540/1079 (50%), Gaps = 63/1079 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDMQDNLKMT-----------------NQGKTPFPTVPSIVL 101
                    I+PIIG +  +                           +  +       + +
Sbjct: 60   YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                +EG   L  L S            R+    L    + G+I  TG  SG +      
Sbjct: 120  WAKDSEGLHNLFRLSSLASYEG-YYMKPRMDRE-LMGQYSGGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ +F  +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
                   +V   +  +P+F   E +     +E+ LR K   GL+ +            ++
Sbjct: 298  EMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------PKE 347

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
              +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+
Sbjct: 348  VLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAIN 407

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKA
Sbjct: 408  PLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKA 467

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPS 507
            A++D  R L  P++  D++ K +P D     V L  I D S         FR+    +P 
Sbjct: 468  AVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPD 527

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            V +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ G
Sbjct: 528  VAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMG 587

Query: 568  LIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ +
Sbjct: 588  LMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKSIALDDKTTYEMLARGDTLGVFQLDGT 647

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DP 680
             MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D 
Sbjct: 648  AMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDE 707

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G
Sbjct: 708  ILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHG 767

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +
Sbjct: 768  YSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKD 827

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-AD 859
            K+  +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A   +
Sbjct: 828  KMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREEN 887

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P      F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+
Sbjct: 888  GPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQ 947

Query: 920  TNKHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
             N  +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L 
Sbjct: 948  ANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALE 1007

Query: 977  KMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1008 AESDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|53712001|ref|YP_097993.1| DNA polymerase III subunit alpha [Bacteroides fragilis YCH46]
 gi|52214866|dbj|BAD47459.1| DNA polymerase III alpha subunit [Bacteroides fragilis YCH46]
          Length = 1294

 Score =  963 bits (2489), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1146 (31%), Positives = 574/1146 (50%), Gaps = 134/1146 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F+  EF+          
Sbjct: 33   DFVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGP 92

Query: 61   -----------KACAAG-------------------------IQPIIGCQLDIDMQDNLK 84
                        A  AG                          +PIIGC++ +       
Sbjct: 93   KGEIKDLKKRIAAIEAGEVECADKDAEIADCKAKIADAEGRLFKPIIGCEMYVA---RRT 149

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVSR +         R   + L++   EGL
Sbjct: 150  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKG-YYMRPRTDRNELEKYH-EGL 207

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY--- 195
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+       ++ Y   
Sbjct: 208  IICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQ 267

Query: 196  --RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ +  + + L+ TN+  F++EE  EAHD L+ ++    +   +R   T   +
Sbjct: 268  VNVNKHLIEYSKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEW 327

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--------- 304
            +K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    +         
Sbjct: 328  MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 387

Query: 305  --------------------------------------KEEENELRNKAVAGLEVRLAQG 326
                                                  K E + L+     G +      
Sbjct: 388  KDLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDP 447

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                   + + ++RL FEL+++  M F GYFLIV DFI   +   + +GPGRGS AGS  
Sbjct: 448  L------SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAV 501

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L IT IDP+++ LLFERFLNPDR+S+PD DIDF  D R EV+R+V  KYG E+VA I
Sbjct: 502  AYCLQITKIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHI 561

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA 504
            IT+G++  K A++DV R  ++P ++ DRL KL+P+  P   ++L+ AI      + A  +
Sbjct: 562  ITYGTMATKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEAS 621

Query: 505  -DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFN 559
             DP V   ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+ 
Sbjct: 622  PDPLVRDTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYE 681

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTL 618
               IE  GLIK DFLGLKTL++++++++ +   +G+++D+  I  +D  TY L +   T+
Sbjct: 682  GSVIEDTGLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTI 741

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P++
Sbjct: 742  GTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVM 801

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  K
Sbjct: 802  EKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRK 861

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N
Sbjct: 862  NGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSN 921

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEAS 857
            +  I K   + +   +Q + P VN   + F V  N    + L A+KGVG    + IME  
Sbjct: 922  ITDITKLMDECKMMGVQTLGPDVNESNLKFTVNRNGNIRFGLGAVKGVGEAAVQSIMEER 981

Query: 858  A-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNI 908
              + PF  + DF  RV+    N++ +E L  AG  D F    R Q           L+ +
Sbjct: 982  KENGPFKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGETFLETL 1041

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +Y    + ++     ++F  +         +      N   R   E+ ++G Y S HPL
Sbjct: 1042 MRYGNRYQADKAAAVNSLFGGDNVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPL 1101

Query: 969  DVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            D Y  +L  +      E    + + G  I +  +V S ++  ++ G+  G     + +  
Sbjct: 1102 DEYAIVLEHVCNTHMSELDDKSALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGS 1161

Query: 1027 YEANFF 1032
             E  FF
Sbjct: 1162 AEIPFF 1167


>gi|317182665|dbj|BAJ60449.1| DNA polymerase III subunit alpha [Helicobacter pylori F57]
          Length = 1211

 Score =  963 bits (2489), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1078 (34%), Positives = 583/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +++  +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKEDKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDDQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFEDDASYFAYKAREGLKERLVLVPKEKH---DQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQAIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+ A +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMVAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L AIKGVG    ++I+E     
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERTKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|325996713|gb|ADZ52118.1| DNA polymerase III alpha subunit [Helicobacter pylori 2018]
 gi|325998307|gb|ADZ50515.1| DNA polymerase III alpha subunit [Helicobacter pylori 2017]
          Length = 1211

 Score =  963 bits (2489), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1078 (34%), Positives = 586/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ LI L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLIFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAKEEGLDFEDDASYFAHKAREGLKERLILVPKEKH---DQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNEIAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKIGVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N    DF V + +           + L AIKGVG    ++I+E     
Sbjct: 831  RALEIEVMPPHINYSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERTKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F   +G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMEGGIKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|222823894|ref|YP_002575468.1| DNA polymerase III, alpha chain [Campylobacter lari RM2100]
 gi|222539116|gb|ACM64217.1| DNA polymerase III, alpha chain [Campylobacter lari RM2100]
          Length = 1197

 Score =  963 bits (2489), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1059 (35%), Positives = 596/1059 (56%), Gaps = 48/1059 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   + A    ++A+TD  N+F A++F +   A GI+PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELAKTLKAQGATSVAMTDHGNMFGAIDFYKTMRAEGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D++               + L      GY+ L+ L S+ Y+        R
Sbjct: 64   IGLEAYLHNHDDI-----SDKSSRQRFHLCLFAKNEIGYKNLMYLSSQSYIHGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTFKKLFGD 180
            I    L E  ++GLI  +    G I+            F     + A++  L +KK+FGD
Sbjct: 118  INKKLL-EAHSDGLICSSACLQGEINWHLNTKNERNIKFGAKGYEGAKEAALWYKKVFGD 176

Query: 181  RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ + RH   D+ + +  +++LA   ++ ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYLEIMRHGIDDQKFIDDSIIKLAKELDIKIIATNDTHYTFKERAAAHEVFMCIAMGVK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
            +    R R    + Y+K   +M  +F+D+PEA+ENT EIA +C+  L++  P  P F   
Sbjct: 237  LDDPGRLRHEVHEFYVKTPEQMSELFADIPEAIENTQEIANKCNLELKLGDPTPPNFKFT 296

Query: 296  ---IEKECDDIQKEEENE--------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                +K   ++ +E++                 GLE RL     +K    Q+Y+ RLD E
Sbjct: 297  REYAKKYSLNLAQEDQEFSFDNDDIVFEYLCKKGLEERLQFIDESKH---QEYKDRLDLE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +++I  MKFSGY LIV DFI  AK+ +IPVGPGRGS AGS+ +Y L ITD+DP+ ++LLF
Sbjct: 354  ISIIKNMKFSGYMLIVHDFIAAAKEKDIPVGPGRGSAAGSLVSYCLKITDLDPIPYNLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG E+VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRGEVIDYVIDKYGAEKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +  +A   + +  E   + P   ++ + ++ LEGL R+
Sbjct: 474  CDMSIPDADALAKLVPEELKITLE-KAYEQEPKIAEFVNSHPKGRQVWDFAKALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L    P++R  ++D    VTQ++ +++E   LIKFDFLGLKTLT++
Sbjct: 533  AGLHAAGVVISNEALWNKAPLFRQSKNDERHLVTQYSKEYLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R    V    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  DNAIKLVKKRYGKDVIWEKIDMNDPKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            D+IA+++LYRPGP+D+ +V  + + K+G++        + P+L+ T GVI+YQEQVMQI 
Sbjct: 653  DLIAVLALYRPGPLDSGMVDDFIDIKHGRKAATYAFDDLKPILENTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q + G+SL  AD +RRAMGKK +E +D  K  ++ GA K G  +  A ++FEL+ KFA+Y
Sbjct: 713  QKIGGFSLGGADNVRRAMGKKKREILDNLKAEYLEGAKKQGYDEKKADDLFELILKFAEY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E  NV+K+ K+ ++ ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEESNVDKVAKYIEEMKRMNIKLLPP 832

Query: 820  SVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
            SVN    +F       G   I Y L AIK VG     +IM    ++ F   +DF S +D 
Sbjct: 833  SVNKAQREFSATKLEDGSEAIIYGLGAIKSVGIPAIENIMTIRKEEGFSDFDDFISSIDP 892

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
             K+N++ +E+L  +GA D FGY+R  L+ +L+ I + ++ + + + N   ++F  E+   
Sbjct: 893  TKINKKTIENLAKSGAFDEFGYTRKCLVDNLELISETSRKIAEVKRNSTASLFGEEEIAA 952

Query: 935  SDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
              K+ L    VE     +   E+ +LG Y SGHPLD +   +  +      +        
Sbjct: 953  DIKVGLHDSKVEFELMEKLGYEKEILGIYVSGHPLDKFASQIEGIDYFKSMDFETLKGEG 1012

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +   +   +   ++ G R       +    ++   F
Sbjct: 1013 ELLVVGKIEDFKSMMSKSGKRYAKAVVLDFYSSFDMIIF 1051


>gi|255007521|ref|ZP_05279647.1| DNA polymerase III alpha subunit [Bacteroides fragilis 3_1_12]
 gi|313145215|ref|ZP_07807408.1| DNA polymerase III alpha subunit [Bacteroides fragilis 3_1_12]
 gi|313133982|gb|EFR51342.1| DNA polymerase III alpha subunit [Bacteroides fragilis 3_1_12]
          Length = 1264

 Score =  963 bits (2489), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/1146 (31%), Positives = 572/1146 (49%), Gaps = 134/1146 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------- 58
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F+  EF           
Sbjct: 3    DFVHLHVHTQYSLLDGQASVSALVDKAIKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGP 62

Query: 59   ---------SQKACAAG-------------------------IQPIIGCQLDIDMQDNLK 84
                        A  AG                          +PIIGC++ +       
Sbjct: 63   KGEIKDLKKWIAAIEAGEVDCADKEAEIADCKAKIVEAEGRLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVSR +         R   + L++   EGL
Sbjct: 120  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKG-YYMRPRTDRNELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY--- 195
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+       ++ Y   
Sbjct: 178  IICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQ 237

Query: 196  --RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A  + + L+ TN+  F++EE  EAHD L+ ++    +   +R   T   +
Sbjct: 238  VNVNKHLIEYAKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--------- 304
            +K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    +         
Sbjct: 298  MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 357

Query: 305  --------------------------------------KEEENELRNKAVAGLEVRLAQG 326
                                                  K E + L+     G +      
Sbjct: 358  KDLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDP 417

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                   + + ++RL FEL+++  M F GYFLIV DFI   +   + +GPGRGS AGS  
Sbjct: 418  L------SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAV 471

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L IT IDP+++ LLFERFLNPDR+S+PD DIDF  D R EV+R+V  KYG E+VA I
Sbjct: 472  AYCLQITKIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHI 531

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA 504
            IT+G++  K A++DV R  ++P ++ DRL KL+P+  P   ++L+ AI      + A  +
Sbjct: 532  ITYGTMATKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEAS 591

Query: 505  -DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFN 559
             DP V   ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+ 
Sbjct: 592  PDPLVRDTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYE 651

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTL 618
               IE  GLIK DFLGLKTL++++++++ +   +G+++D+  I  +D  TY L +   T+
Sbjct: 652  GSVIEDTGLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTI 711

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P++
Sbjct: 712  GTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVM 771

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  K
Sbjct: 772  EKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRK 831

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N
Sbjct: 832  NGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSN 891

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIM-EA 856
            +  I K   + +   +Q + P VN   + F    N    + L A+KGVG    + IM E 
Sbjct: 892  ITDITKLMDECKAMGVQTLGPDVNESNLKFTANRNGNIRFGLGAVKGVGEAAVQSIMEER 951

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNI 908
              + PF  + DF  RV+    N++ +E L  AG  D F    R Q           L+ +
Sbjct: 952  RENGPFKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNAKGETFLETL 1011

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +Y    + ++     ++F  +         +      N   R   E+ ++G Y S HPL
Sbjct: 1012 MRYGNRYQADKAAAVNSLFGGDNVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPL 1071

Query: 969  DVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            D Y  +L  +      E    A + G  I +  +V S ++  ++ G+  G     + +  
Sbjct: 1072 DEYAIVLEHVCNTRMIELDDKAALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGS 1131

Query: 1027 YEANFF 1032
             E  FF
Sbjct: 1132 AEIPFF 1137


>gi|254458525|ref|ZP_05071950.1| DNA polymerase III, alpha subunit [Campylobacterales bacterium GD 1]
 gi|207084833|gb|EDZ62120.1| DNA polymerase III, alpha subunit [Campylobacterales bacterium GD 1]
          Length = 1167

 Score =  963 bits (2489), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1052 (35%), Positives = 574/1052 (54%), Gaps = 72/1052 (6%)

Query: 41   QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
              ++A+TD  N+F A++F  +  AA I+PIIG +  I   + L               I 
Sbjct: 1    MTSVAMTDHGNMFGAIDFYHQMKAADIKPIIGMEGYIHNGETL-----DDKSTKQRFHIC 55

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA-F 159
            L     +GY+ L+ L S+ ++        RI    L    +EGLI  +    G ++    
Sbjct: 56   LFAKNKKGYENLMYLSSKAFIEGM-YYFPRINKKELA-AHSEGLICTSACLQGEVNWHLN 113

Query: 160  FFN---------SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHEL 209
              N           + A+   L +K++FGD  Y+ L RH   D+ + ++++++++    +
Sbjct: 114  LANERNVRNGALGYEGAKAVALEYKEIFGDDFYLELMRHGIGDQLFIDNEILKISKETGI 173

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLP 268
             +VATN++ +    D + H+  M +  + +    +R R +  + YLK+  +M  +F+D+P
Sbjct: 174  KIVATNDTHYTYPGDAQYHEAFMCIGMNKLYDDPNRMRHSVHEFYLKSPEQMARLFADIP 233

Query: 269  EALENTVEIARRCS-FILQVHAPILPRF---IEKECDD---------------------- 302
            EAL +T EI  +   F + V  PI P F    E   +D                      
Sbjct: 234  EALAHTQEIVDKIEDFSITVKEPIPPNFKFTPEYAANDGLAINHEDDAPLSADASAEDKK 293

Query: 303  -----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                 I K +          GL+ RL      K     +YR+RL+FE+N+I  MKF GY 
Sbjct: 294  KWFSGIDKNDAEYFTFCCKRGLDNRLKIVPQEKH---DEYRERLEFEINIINSMKFPGYM 350

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DF++ AK   I VGPGRGS AGS+ AY+L ITDIDP+++ LLFERFLNP+R+SMPD
Sbjct: 351  LIVWDFVKVAKDRGIAVGPGRGSAAGSLVAYSLDITDIDPMKYDLLFERFLNPERVSMPD 410

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF Q RR EVI YV  KYG  +VAQIITFGSL AK  +RDV R L MP SQ D++ K
Sbjct: 411  IDMDFMQARRGEVIDYVVEKYGRNQVAQIITFGSLLAKGVIRDVARVLDMPLSQADKMAK 470

Query: 478  LIPNDPAHPVSLQ---------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            LIP++    ++ +         A   + + RE   +D +  R+ E ++KLEGL R++  H
Sbjct: 471  LIPDELGITLNGKTKNGEFIDGAFQKEPKLRELIDSDANSKRVWEFAKKLEGLKRNSGIH 530

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+VI +  L    P+Y+       VTQ+++ ++E   LIKFDFLGLKTL ++  ++  
Sbjct: 531  AAGVVISNEELWYKTPIYKPSGETTFVTQYSLNYLEDVDLIKFDFLGLKTLDVIDNAIKL 590

Query: 589  LAQRGVKVDLSLIPFD-DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + +R  K  +     + D + Y ++ T  T+G+FQ+ESSGM+   + ++PD  ED+IA++
Sbjct: 591  VKRRFDKDVIWNQIDENDPKVYEVIRTGETVGMFQIESSGMQDLNKRLKPDSFEDLIAVL 650

Query: 648  SLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +LYRPGP+++ ++  +  RK+G+E I      ++ +L +T GVI+YQEQVMQI Q + G+
Sbjct: 651  ALYRPGPMESGMLDSFIERKHGRETIEYTFDTMETILGKTYGVIVYQEQVMQIVQTIGGF 710

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL  +D++RRAMGKK   +M      F  GA K G     A  +F+L+ KFA YGFNKSH
Sbjct: 711  SLGYSDIIRRAMGKKK--DMSVFNHEFSDGAQKQGYDYDKASKLFDLIEKFAGYGFNKSH 768

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA++++QTAW+KT+YP EF+AA +T + DN EK+ ++  + R+  I++ PP VN   
Sbjct: 769  SAAYAMVTFQTAWLKTYYPNEFMAALLTSDKDNTEKVVRYIDEVRRMGIELAPPDVNDSY 828

Query: 826  VDFKVGDNRI----YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRR 880
            ++F            + L AIKGVG      I++    D  F S+E+F +R+D  K+N+R
Sbjct: 829  LEFSAITKDEKDIILFGLGAIKGVGGAAVESIIQTREEDGEFTSIENFVNRIDPSKVNKR 888

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             +ES + +G  D FGYSR  LL  ++ I   A+     R N   ++F  ++   + K++L
Sbjct: 889  FVESSIKSGGFDRFGYSRKALLDQIELIVDTAKDASTARKNAVGSLFGDDEEITTVKLSL 948

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
            +           E E+  LGFY SGHPLD Y+  L ++      E      G        
Sbjct: 949  KNSDEYELKEILEFEKDTLGFYVSGHPLDEYRDKLDELNYSLSSELEGIKDGTFAIFIGK 1008

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V   Q+K ++KG++ G V+  +     E   F
Sbjct: 1009 VEEIQKKVSKKGNQFGIVSLMDFHGNIEIMLF 1040


>gi|301161727|emb|CBW21267.1| putative DNA polymerase III alpha subunit [Bacteroides fragilis 638R]
          Length = 1294

 Score =  962 bits (2488), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1146 (31%), Positives = 574/1146 (50%), Gaps = 134/1146 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F+  EF+          
Sbjct: 33   DFVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGP 92

Query: 61   -----------KACAAG-------------------------IQPIIGCQLDIDMQDNLK 84
                        A  AG                          +PIIGC++ +       
Sbjct: 93   KGEIKDLKKRIAAIEAGEVECADKDAEIADCKAKIADAEGRLFKPIIGCEMYVA---RRT 149

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVSR +         R   + L++   EGL
Sbjct: 150  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKG-YYMRPRTDRNELEKYH-EGL 207

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY--- 195
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+       ++ Y   
Sbjct: 208  IICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQ 267

Query: 196  --RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ +  + + L+ TN+  F++EE  EAHD L+ ++    +   +R   T   +
Sbjct: 268  VNVNKHLIEYSKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEW 327

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--------- 304
            +K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    +         
Sbjct: 328  MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 387

Query: 305  --------------------------------------KEEENELRNKAVAGLEVRLAQG 326
                                                  K E + L+     G +      
Sbjct: 388  KDLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDP 447

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                   + + ++RL FEL+++  M F GYFLIV DFI   +   + +GPGRGS AGS  
Sbjct: 448  L------SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAV 501

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L IT IDP+++ LLFERFLNPDR+S+PD DIDF  D R EV+R+V  KYG E+VA I
Sbjct: 502  AYCLQITKIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHI 561

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA 504
            IT+G++  K A++DV R  ++P ++ DRL KL+P+  P   ++L+ AI      + A  +
Sbjct: 562  ITYGTMATKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEAS 621

Query: 505  -DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFN 559
             DP V   ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+ 
Sbjct: 622  PDPLVRDTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYE 681

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTL 618
               IE  GLIK DFLGLKTL++++++++ +   +G+++D+  I  +D  TY L +   T+
Sbjct: 682  GSVIEDTGLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTI 741

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P++
Sbjct: 742  GTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVM 801

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  K
Sbjct: 802  EKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRK 861

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N
Sbjct: 862  NGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSN 921

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEAS 857
            +  I K   + +   +Q + P VN   + F V  N    + L A+KGVG    + IME  
Sbjct: 922  ITDITKLMDECKMMGVQTLGPDVNESNLKFTVNRNGNIRFGLGAVKGVGEAAVQSIMEER 981

Query: 858  A-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNI 908
              + PF  + DF  RV+    N++ +E L  AG  D F    R Q           L+ +
Sbjct: 982  KENGPFKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGETFLETL 1041

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +Y    + ++     ++F  +         +      N   R   E+ ++G Y S HPL
Sbjct: 1042 MRYGNRYQADKAAAVNSLFGGDNVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPL 1101

Query: 969  DVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            D Y  +L  +      E    + + G  I +  +V S ++  ++ G+  G     + +  
Sbjct: 1102 DEYAIVLEHVCNTHMSELDDKSALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGS 1161

Query: 1027 YEANFF 1032
             E  FF
Sbjct: 1162 AEIPFF 1167


>gi|317014874|gb|ADU82310.1| DNA polymerase III subunit alpha [Helicobacter pylori Gambia94/24]
          Length = 1211

 Score =  962 bits (2488), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1078 (34%), Positives = 587/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A++    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKRIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAKEEGLDFEDDASYFAYKAREGLKERLILVPKEKH---DQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNEVAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L A+KGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F   +G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMEGGTKEQVILDMADLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|229019828|ref|ZP_04176629.1| DNA polymerase III subunit alpha [Bacillus cereus AH1273]
 gi|229026053|ref|ZP_04182436.1| DNA polymerase III subunit alpha [Bacillus cereus AH1272]
 gi|228735269|gb|EEL85881.1| DNA polymerase III subunit alpha [Bacillus cereus AH1272]
 gi|228741435|gb|EEL91634.1| DNA polymerase III subunit alpha [Bacillus cereus AH1273]
          Length = 1095

 Score =  962 bits (2488), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1016 (35%), Positives = 577/1016 (56%), Gaps = 49/1016 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L+ A  ++ ++ +       ++AITD N ++  + F +     GIQPIIG    I  ++
Sbjct: 1    MLKSACKIDELVIRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPIIGLTASIFSEE 60

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
              K              +VLL     GYQ L+++ S +      K    I   WL     
Sbjct: 61   EEK-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEGIPKKWLAHYA- 104

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-V 200
            +GLI ++ G  G I++    +    AE+   T++ +F    Y++LQ H   D     + +
Sbjct: 105  KGLIAISPGKDGEIEQLLLEDKESQAEEVAHTYQNMFS-NFYISLQHHAIQDELLLQEKL 163

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY-LKNRSE 259
             +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+  D Y LK+  E
Sbjct: 164  PEFINKVNVPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRMKTDQYYLKSSDE 223

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M ++FS   EA++NT++IA RC   +  H   LP+F     +      +  LR     GL
Sbjct: 224  MEALFSHAEEAIQNTIKIAERCRVEIPFHVNQLPKFPVPSNE----TNDTYLRRVCEEGL 279

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
              R        G   + + QRL+ EL+VI+ M FS YFLIV DF+++A +N+I  GPGRG
Sbjct: 280  RKRY-------GTPKEVHIQRLNHELDVISSMGFSDYFLIVWDFMKYAHENHILTGPGRG 332

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            S AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+IRYV++KYG
Sbjct: 333  SAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEMIRYVKDKYG 392

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
              RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   A  +    R
Sbjct: 393  QLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK-DAYEESQSLR 451

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
            E    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  +D+ VTQ+ 
Sbjct: 452  EFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGHNDVYVTQYP 510

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
               +E+ GL+K DFLGL+ LTLL+  + F+  + G  +D+  +P  D +T+ LL    T 
Sbjct: 511  ADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKHIDIRNLPLQDEKTFQLLGRGDTT 570

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK +I  +HP +
Sbjct: 571  GVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKRRIEYLHPDL 630

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
             P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D++++ F+ G  K
Sbjct: 631  KPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQERKHFVQGCLK 690

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG  +T +  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ A ++  + N
Sbjct: 691  NGYDETASEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMTALLSSAIGN 750

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
             +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T   ++E   
Sbjct: 751  EDKIVQYIRETKRKGFHVLPPSLQRSGYNFQMEGNAIRYSLLSIRNIGMATVTALLEERE 810

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
             K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    +YA      
Sbjct: 811  GKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGALEYAN----- 865

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                     A + G    K    +        +   E+  LGFY S +P   Y  + +++
Sbjct: 866  --------LARDLGDAVPKSKYVQGEELPFIEQLNKEKEALGFYLSSYPTAQYAKLGKEL 917

Query: 979  GIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             I    +  A      + R    + S +  +T+K  ++ ++TF +   E EA  FP
Sbjct: 918  EIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEMEAVVFP 971


>gi|332184948|ref|ZP_08386697.1| DNA polymerase III, alpha subunit [Sphingomonas sp. S17]
 gi|332014672|gb|EGI56728.1| DNA polymerase III, alpha subunit [Sphingomonas sp. S17]
          Length = 1157

 Score =  962 bits (2488), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/1037 (44%), Positives = 629/1037 (60%), Gaps = 30/1037 (2%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             L++ SS+++L+GA+    I  +  A+  PA  +TD N L++A+ FS  A  AG+QPIIG
Sbjct: 2    PLRIFSSFTMLDGAIDPKAIAAQAKANAFPAAGLTDRNGLYAAMAFSDAAKKAGVQPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              L +   D         +  P V  I L      GY  L  LVS  +L    + +  + 
Sbjct: 62   TMLGVARPD------MPDSVTPVVDWIALYAQDMTGYDNLCALVSAAHLERPIELAAHVG 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
               L +  + GLI LT G  G I R F       A+      + +FGDRLY+ L R    
Sbjct: 116  FDTLGKF-STGLIALTAGGEGGIARLFAEGQPDRAKAYCDRLQAMFGDRLYIELARRDDP 174

Query: 193  -DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             +   E  ++ LAY  +LPLVATN   F      +AHD ++ +A+ST V   DRP+ +P+
Sbjct: 175  TEIAAEQDLIDLAYDRDLPLVATNPCCFADSGFRDAHDAMLCIANSTYVEMDDRPKSSPE 234

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +LK    M  +F+DLPEA++NT+ +A+RC+ +     PILP          ++ E   L
Sbjct: 235  AWLKPAEVMKQLFADLPEAIDNTLVVAQRCAVMAPWRKPILPSLAGD-----REGEAAML 289

Query: 312  RNKAVAGLEVRLAQGAIAKGY----HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            R  A AGLE RL + A  +G       + Y +RL FE+++I +M F GYFLIVADFI+WA
Sbjct: 290  RRDATAGLEARLDRIAELEGEGEPGWREAYHERLTFEVDIIIQMGFPGYFLIVADFIKWA 349

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K ++IPVGPGRGSGAGSV A+ALTITD+DPL+  LLFERFLNP+R+SMPDFDIDFC+ RR
Sbjct: 350  KDHDIPVGPGRGSGAGSVVAWALTITDLDPLKLGLLFERFLNPERVSMPDFDIDFCETRR 409

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVIRYVQ KYG ++VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P  P 
Sbjct: 410  GEVIRYVQEKYGRDQVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPW 469

Query: 488  SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             L+ A+       +    D  V RLL+++ KLEGL RH+STHAAG+VIGDRPL+QLVP+Y
Sbjct: 470  DLKRALNGVPELAKEYANDNQVRRLLDLATKLEGLPRHSSTHAAGVVIGDRPLAQLVPLY 529

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            RD RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++  L +RGV VDL  + +DD 
Sbjct: 530  RDPRSDMPVTQFDMKFVEGAGLVKFDFLGLKTLSVLQKAVQLLRKRGVDVDLGALAWDDE 589

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             TY LL    T+G+FQLES GMR+ L  ++P    DIIALVSLYRPGP+DNI  +  RK 
Sbjct: 590  ATYALLQKGDTVGVFQLESEGMRRTLSAVRPTNFGDIIALVSLYRPGPMDNIPSFGRRKQ 649

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G E+I+  HPL++ +L ET G+ +YQEQVMQ AQ+L+GYSL  AD+LRRAMGKK+K EMD
Sbjct: 650  GTEEIIYPHPLLEQILSETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKVKAEMD 709

Query: 727  KQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             Q+  F+ G  + NGI    A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K H+P 
Sbjct: 710  AQRAIFVKGCQEVNGIPAQKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHHPH 769

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----RIYYSLAA 841
            EF AASM  +M   +K+  F  DAR+  + ++PP +N    +F V        + Y+L A
Sbjct: 770  EFYAASMCYDMALTDKLAIFVDDARRMGVTMLPPCINASQAEFDVEPYEDGLAVRYALGA 829

Query: 842  IKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +K VG      + +E  A   F SL+    RVD + +N+R LE+L  AGA D    +R  
Sbjct: 830  LKSVGEGAMEKLVVEREAGGAFASLDALAKRVDPRLMNKRQLETLASAGAFDGIEANRAG 889

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +    + +   A    + RT+    +F  E     D I L        S R E E+   G
Sbjct: 890  VHAVAETVLAIAARTHEGRTSGQGGLFG-ETEVAGDAIKLPSGVRWTLSQRMEQEKEAFG 948

Query: 961  FYFSGHPLDVYKPILR---KMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRI 1015
            FYFS HP+D +  I +           E +    G  I   +AA+V   + + + +G R 
Sbjct: 949  FYFSAHPVDRHAHIAKMHGARTYTSLTELIIPDDGARIGATMAALVEDARWRTSARGKRY 1008

Query: 1016 GWVTFSEPAKEYEANFF 1032
                 S+   ++ A  F
Sbjct: 1009 MMAQLSDATGQFLATCF 1025


>gi|330984024|gb|EGH82127.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. lachrymans
            str. M301315]
          Length = 1201

 Score =  962 bits (2487), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1056 (38%), Positives = 596/1056 (56%), Gaps = 62/1056 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSL +  + +  ++ K     QPAIAI+DT+N+F+ ++    A A G++P
Sbjct: 2    SFVHLSVHSEYSLHDSLIRVKPLMSKAKEFNQPAIAISDTSNMFATIKAYNGAMAMGVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL--DQGKQ 127
            II  ++            Q KTP     +I L     +GYQ L EL+SR Y       + 
Sbjct: 62   IIAAEV------------QIKTPRLPASTITLYCMNNDGYQALCELISRGYNEAPRDDQN 109

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I L WL +  T+ LI L+GG  G I R    N   +  + L  +K LFGDRL++ LQ
Sbjct: 110  HPVIPLEWL-DGQTDNLIALSGGREGEIGRLMMSNRKALVAEALSDYKLLFGDRLFIELQ 168

Query: 188  R--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS---Q 242
            R  H   DRY   + V LA  H+LP+VATN S FL   D++ H+V +A+A    V    +
Sbjct: 169  RIGHPADDRYV-KEAVSLAIEHKLPVVATNPSRFLDPADFQTHEVRIAIAQGRSVRALRE 227

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
               P  T   Y K+  EM  +FSD+P+A++NTV IA  CS  L +    LP F   +   
Sbjct: 228  DLNPPCTQHQYFKSSEEMTELFSDIPQAIQNTVRIAALCSVDLTLGKSFLPSFPAPD--- 284

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLI 359
             +  E + L   +  GLE RLA     K         Y +RL FEL VI +M F GYFLI
Sbjct: 285  -KMSEADYLEKTSYEGLEERLAYLFKDKDEIDAKRPTYVERLKFELGVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI+WAK N+IPVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VADFIKWAKANDIPVGPGRGSGAGSLVAYSLGITDLDPLPYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VIRYV + YGH+ V+QIIT+G++ AK  +RDV RAL  PY   +++ +LI
Sbjct: 404  VDFCMDKRDQVIRYVADAYGHDAVSQIITYGTMAAKMVVRDVARALGYPYRLGNQISQLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A+      +     D  V  ++  + KLEG+ R    HA G++I    L
Sbjct: 464  PKEPDITLE-KALDRVPTLKVMLDTDHDVKNIMLHALKLEGITRQVGKHAGGVLISPGAL 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---- 595
            +Q  P Y D      V+Q++   +EKAGL+KFDFLGL+ LT++  +L  +  R  K    
Sbjct: 523  TQFTPTYCDPDGGSLVSQYDKDDVEKAGLVKFDFLGLRNLTIIDHALKSINGRREKEGLA 582

Query: 596  -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ I   D  TY ++    T  +FQLESSGM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  KIDINGIDLTDKLTYEMIQRCETTAVFQLESSGMKNLIKRIQPDCFEDLIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+ ++   HP      + P+L+ T G+I+YQEQVMQIAQ+++GY+L
Sbjct: 643  LQSGMVDDFIDRKHGRAELSYPHPNYQYAGLKPVLEPTYGIILYQEQVMQIAQVMAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F+ G  KNGI   +A NIF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRGGFVEGCGKNGIDAHLAGNIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++++QTAW+K HYP +F+AA ++ +MDN +K+ +F  + R   ++I  P  N     
Sbjct: 763  AYALVAFQTAWLKAHYPADFMAAVLSSDMDNTDKVVRFIHECRNMGVEIQTPHANHSQWH 822

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F   +  I Y L AIKG G + ++  + +  A   +  + DF  R     LN+  +E+ +
Sbjct: 823  FTSHNGVILYGLGAIKGFGESASKAMLADRKAGGSYQDIIDFLRR---NSLNKSSIEACI 879

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AG  D  G  R +LL          + + KN       +F  +       +   + +V 
Sbjct: 880  HAGMFDFSGLQRSELLAIYPTAASAGKQLRKNVN--QGMLFDMDLPV----VKRTETTVM 933

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----------NNIR 996
            +  VR   E++ LG Y +GHP   Y+  L+        E   ++             ++ 
Sbjct: 934  DDDVRLAGERKHLGLYLTGHPYAKYQTRLKHSLTASLIEIAQSVEDDVDGVEKAKFKHVT 993

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +A ++     +   KG+   +    +     + + F
Sbjct: 994  VAGLLSDIDARSNTKGT-YAFFKLDDGTARLDCSIF 1028


>gi|294827603|ref|NP_710439.2| DNA polymerase III subunit alpha [Leptospira interrogans serovar Lai
            str. 56601]
 gi|293385447|gb|AAN47457.2| DNA polymerase III alpha subunit [Leptospira interrogans serovar Lai
            str. 56601]
          Length = 1136

 Score =  962 bits (2487), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1004 (37%), Positives = 574/1004 (57%), Gaps = 28/1004 (2%)

Query: 41   QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
              ++A+TD  N+F A+EF  +A   GI+PIIG +  +   +  + T   K        ++
Sbjct: 1    MSSVAMTDHGNMFGAVEFYNEAIKQGIKPIIGSEFYVSP-NRKQETEMVKIADGNAYHLI 59

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            LL    EGY+ LI L S+ Y      +  RI    L    +EGL+ LT   +G ++R   
Sbjct: 60   LLAKNEEGYKNLIRLSSKSYTEG-FYKKARIDYDLLDRY-SEGLVCLTACLAGEVNRKIL 117

Query: 161  FNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYDRYRES-QVVQLAYTHELPLVATNNSL 218
                  + +      ++F  +  Y+ +Q H   ++   + QV +      +PLV TN+S 
Sbjct: 118  EGKIDESFQLAGKLNEIFRKEDFYMEIQNHGIPEQMTVAKQVYEFGKKTGIPLVVTNDSH 177

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            FL + D EA D+L+ +     ++         + Y+KN  EM  IF ++PEA  NT+EI+
Sbjct: 178  FLKKNDQEAQDILLRIGMQKRITDPMEFGFNGEFYVKNGDEMAKIFPEIPEAFYNTLEIS 237

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
             + +  LQ    +LP F   E  D     ++ L      G+E +           + + +
Sbjct: 238  NKVNLKLQFGNYLLPEFEVPEGYDA----DSYLEKLIWEGIERKYPN-------LSPEIK 286

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +R+ FELN I  MKF+GYFLIV D+I +AK+N IPVGPGRGS AGS+ AYAL IT+++PL
Sbjct: 287  ERVIFELNTIKNMKFAGYFLIVQDYINYAKRNGIPVGPGRGSAAGSIVAYALGITNVEPL 346

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
            + +LLFERFLNPDR  MPD D DFC +RR+EVI Y++ +YG E+V QIITF SL AKAAL
Sbjct: 347  QHNLLFERFLNPDRKDMPDIDTDFCVERREEVINYIRRRYGEEKVGQIITFNSLAAKAAL 406

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
            +DV R L +P+ + + + K  PN     +S +A++  S  +     D    ++  I+Q+L
Sbjct: 407  KDVARVLNLPFGEANEMTKAFPNKLGMSIS-EALSTSSELKNFSEKDDINHKIFAIAQRL 465

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDF 573
            EG YR    HAAG+VI   PL ++VP+      + P     VTQ++   +E  GLIK D 
Sbjct: 466  EGNYRQPGRHAAGVVISPYPLEEVVPLSTVAEKEKPGVRAIVTQYDKNNLESIGLIKMDI 525

Query: 574  LGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGLK LT L  ++  + QR  ++++L  I +DD  TY LL    TLGIFQLES+G+   +
Sbjct: 526  LGLKNLTTLDYAIKLIEQRRGIRINLDEISYDDANTYSLLRKANTLGIFQLESTGITDLV 585

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
               Q    ++I+AL++LYRPGP+   ++  Y +RK+GK+++   HP  +P+LKET GV +
Sbjct: 586  AKSQVSNFDEIVALIALYRPGPMGEGMLDEYLDRKSGKKQVTYPHPSCEPILKETFGVPV 645

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVM I++++ G+S+ ++DVLR+AM KK  + MDK K +F+ GA K GI + +A ++F
Sbjct: 646  YQEQVMSISRVVGGFSVGDSDVLRKAMAKKKADLMDKLKVQFVEGAVKQGIQEKVAKDLF 705

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            E L +F  YGFNKSH+ AYA+I+YQTA++K +Y +E+L A +  +      I K+  +AR
Sbjct: 706  EQLERFGGYGFNKSHSVAYAIITYQTAYLKANYTIEYLTALLASDHGKTTDIVKYINNAR 765

Query: 811  QFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDF 868
            +  IQI+ P V+     F V  +  I + L+A+KGVG T A  I++A      F +L+DF
Sbjct: 766  EMGIQILNPDVSESQASFSVIDNTTIRFGLSAMKGVGETAANSIIQARTKVGSFRTLQDF 825

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
               +D++ +N++V E+L+ AGALD FGY+R  L +S+D+I  +AQ  ++       ++F 
Sbjct: 826  ALNIDTRLINKKVFEALIQAGALDSFGYTRKCLFESVDSILTFAQKEQERANEGQFSLFG 885

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
            +E+ +FS  +  +         + + E+ + G Y SGHPLD Y+  L+ +     E+   
Sbjct: 886  NEESSFSLNLPKDAL-EWEIDEKLKREKAIAGLYLSGHPLDKYEKQLKSLKTIPIEKFDD 944

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               G  + +A ++ SK  K +++          +   E E   F
Sbjct: 945  LKSGTKVEVAGVISSKNIKLSKRNEEFANFKLEDRTGEIECVAF 988


>gi|315092840|gb|EFT64816.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL060PA1]
          Length = 1190

 Score =  962 bits (2487), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1079 (31%), Positives = 539/1079 (49%), Gaps = 63/1079 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDMQDNLKMT-----------------NQGKTPFPTVPSIVL 101
                    ++PIIG +  +                           +  +       + +
Sbjct: 60   YDGDQNPLVKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                +EG   L  L S            R+    L      G+I  TG  SG +      
Sbjct: 120  WAKDSEGLHNLFRLSSLASYEG-YYMKPRMDRE-LMGQYPGGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ +F  +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
                   +V   +  +P+F   E +     +E+ LR K   GL+ +            ++
Sbjct: 298  EMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------PKE 347

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
              +RL+ EL+VI  + F+ YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+
Sbjct: 348  VLERLETELSVIEPLGFASYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAIN 407

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKA
Sbjct: 408  PLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKA 467

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPS 507
            A++D  R L  P++  D++ K +P D     V L  I D S         FR+    +P 
Sbjct: 468  AVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPD 527

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            V +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ G
Sbjct: 528  VAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMG 587

Query: 568  LIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ +
Sbjct: 588  LMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGT 647

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DP 680
             MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D 
Sbjct: 648  AMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDE 707

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G
Sbjct: 708  ILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHG 767

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +
Sbjct: 768  YSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKD 827

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-AD 859
            K+  +  D R  +I ++PP VN   ++F      I + L A++ VG      I+ A   +
Sbjct: 828  KMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREEN 887

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P      F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+
Sbjct: 888  GPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQ 947

Query: 920  TNKHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
             N  +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L 
Sbjct: 948  ANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALE 1007

Query: 977  KMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1008 AESDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|228470784|ref|ZP_04055632.1| DNA polymerase III, alpha subunit family [Porphyromonas uenonis 60-3]
 gi|228307457|gb|EEK16462.1| DNA polymerase III, alpha subunit family [Porphyromonas uenonis 60-3]
          Length = 1272

 Score =  962 bits (2487), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/1115 (30%), Positives = 558/1115 (50%), Gaps = 104/1115 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-------- 62
            +V L VHS YS+L+G   +  I+DK  A   P IA+TD   ++    F+  A        
Sbjct: 18   YVPLHVHSHYSILDGMAPVEKIVDKAVACGMPGIALTDHGAMYGIKNFTNYANDKINGDK 77

Query: 63   ----CAAG------------------------------IQPIIGCQLDIDMQ-------D 81
                 + G                               + IIGC++ +  +       D
Sbjct: 78   LSQIKSLGKQIKELEADAANAEEVARLQEEVKTIERSLFKAIIGCEVYVARRSLELKDKD 137

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 N  ++   +   ++LL    +GY+ LI++VS  +   +     RI    L E   
Sbjct: 138  AKDPDNPTRSIDRSGYHLILLAKNLKGYRNLIKMVSIAWEHGE-YYKPRIDKKLLTE-HH 195

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------- 193
            EG+I  +    G I +       + A +    +++ FG+  Y+ +  H   D        
Sbjct: 196  EGIIASSACLGGEIAQHILHGRLEEARETARWYQETFGEDYYLEIMLHPNSDPLGGQETY 255

Query: 194  ---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
               +    +V+++     + ++ATN++ FL+EED EAHD L+ +  ++ +S  +R R T 
Sbjct: 256  QKQQLVAQEVLKIGQELGIKVIATNDTHFLNEEDAEAHDHLICMTTNSPISDPNRMRYTK 315

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              +LK+  EM ++F+D P+ LENT+E+  +  +    HAP++P F   E       E++ 
Sbjct: 316  QEWLKSPEEMTALFADYPDVLENTLEVCDKVEYYSIDHAPLMPHFELPEG---FASEDDY 372

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR+    G + R             + ++R+D EL VI  M F GYFL+V DFI  A+K 
Sbjct: 373  LRHLTYEGAKKRYGDPV------PPEVQERIDMELGVIQNMGFPGYFLVVQDFIAAARKL 426

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             + VGPGRGS AGS  AY L+IT I+P+++ LLFERFLNPDR+SMPD DIDF    R  V
Sbjct: 427  GVRVGPGRGSAAGSAVAYCLSITQIEPIKYGLLFERFLNPDRISMPDIDIDFDDKNRWRV 486

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + +V NKYG + V+ IIT  ++  K A++ V R  ++P  Q +RLCKLIP+ P   V   
Sbjct: 487  LDWVTNKYGRDHVSNIITLTTMATKGAIKGVARVEELPLDQANRLCKLIPDRPPEGVKHL 546

Query: 491  AIA----DDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +     ++  FREA ++ +  +   +  +++LEG       HA G++I   P+S +VP+
Sbjct: 547  NLEWMVQNNQEFREASVSQNEQLANTIRYARQLEGTASTTGVHACGVIISGPPVSDVVPL 606

Query: 546  YRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSL 600
               +  D      V Q+  K IE  GLIK DFLGL+TL+++  +L+ +    G+ +D+  
Sbjct: 607  STAIDPDTNERKLVAQYEGKVIEPTGLIKMDFLGLQTLSIINDALENIKVSYGIDLDIDT 666

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD +T+ L +   T+G FQ ES GMR+ L+ ++P   +D++A+ +LYRPGP+DNI  
Sbjct: 667  IPVDDPKTFELYSQGDTVGTFQFESPGMRKYLQQLEPTEFKDLVAMNALYRPGPMDNIPT 726

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RK+G+++I    P ++P LK+T G+ +YQEQVM ++++L  ++  ++D LR+AMGKK
Sbjct: 727  FIERKHGRQEITYDLPEMEPYLKDTYGITVYQEQVMILSRVLGDFTRGDSDSLRKAMGKK 786

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM K + +F+      G  +     I++   KFA Y FNKSH+  YA ++YQTA++K
Sbjct: 787  KEKEMAKYRIKFVENGVTKGHPRETLERIYDGWQKFASYAFNKSHSVCYAWVAYQTAYLK 846

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSL 839
             HYP +F+AA +T   +  +K+ K+ ++ +   +++  P VN     F    +  I + L
Sbjct: 847  AHYPAQFMAALLTCNQNKSDKLTKYLEEVQHMGLEVKGPDVNESFTAFSANKDGVIRFGL 906

Query: 840  AAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
              I  VG + A  I++   +   +  + DF  R D    +RR LE+L+ +GA D FG  R
Sbjct: 907  GGISHVGLSVAEAIIKERKEQGAYQDVYDFFQRTDLTNCSRRALEALILSGAFDSFGIDR 966

Query: 899  MQLLQ-----------------SLDNIQKYAQWVEKNRTNKHENIFAHEKGT--FSDKIT 939
                                   L  + +Y + +E  RT    ++F     +      I 
Sbjct: 967  EVYFAPIAKSGVSGLSYGKDETFLTALMQYGKILESERTQVQASLFGDSDPSVKLPKPIP 1026

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIRGNNIRL 997
             +     ++  R   EQ  +G Y S HPLD Y   +  +      +    A +    +  
Sbjct: 1027 PKDVEPWSNLERLTKEQSYIGMYLSAHPLDPYAFAIEYLCNCPASDLAQFAELGLTQLTC 1086

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A +V   +Q  ++K      +   + +   E   F
Sbjct: 1087 AGLVTKVRQGISKKNEPYAIIQIEDASGSGEIPLF 1121


>gi|327330381|gb|EGE72130.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL097PA1]
          Length = 1190

 Score =  962 bits (2487), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/1079 (31%), Positives = 539/1079 (49%), Gaps = 63/1079 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDMQDNLKMT-----------------NQGKTPFPTVPSIVL 101
                    I+PIIG +  +                           +  +       + +
Sbjct: 60   YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                +EG   L  L S            R+    L    + G+I  TG  SG +      
Sbjct: 120  WAKDSEGLHNLFRLSSLASYEG-YYMKPRMDRE-LMGQYSGGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ +F  +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
                   +V   +  +P+F   E +     +E+ LR K   GL+ +            ++
Sbjct: 298  EMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------PKE 347

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
              +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+
Sbjct: 348  VLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAIN 407

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKA
Sbjct: 408  PLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKA 467

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPS 507
            A++D  R L  P++  D++ K +P D     V L  I D S         FR+    +P 
Sbjct: 468  AVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPD 527

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            V +++  ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ G
Sbjct: 528  VAKVVATAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMG 587

Query: 568  LIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ +
Sbjct: 588  LMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGT 647

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DP 680
             MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D 
Sbjct: 648  AMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDE 707

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G
Sbjct: 708  ILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHG 767

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +
Sbjct: 768  YSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKD 827

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-AD 859
            K+  +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A   +
Sbjct: 828  KMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREEN 887

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P      F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+
Sbjct: 888  GPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQ 947

Query: 920  TNKHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
             N  +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L 
Sbjct: 948  ANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALE 1007

Query: 977  KMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1008 AESDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|314923593|gb|EFS87424.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL001PA1]
 gi|314966638|gb|EFT10737.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL082PA2]
 gi|314981367|gb|EFT25461.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL110PA3]
 gi|315092033|gb|EFT64009.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL110PA4]
 gi|315103640|gb|EFT75616.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL050PA2]
 gi|315105689|gb|EFT77665.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL030PA1]
 gi|327327462|gb|EGE69238.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL103PA1]
          Length = 1190

 Score =  962 bits (2487), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1079 (31%), Positives = 539/1079 (49%), Gaps = 63/1079 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDMQDNLKMT-----------------NQGKTPFPTVPSIVL 101
                    ++PIIG +  +                           +  +       + +
Sbjct: 60   YDGDQNPLVKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                +EG   L  L S            R+    L      G+I  TG  SG +      
Sbjct: 120  WAKDSEGLHNLFRLSSLASYEG-YYMKPRMDRE-LMGQYPGGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ +F  +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
                   +V   +  +P+F   E +     +E+ LR K   GL+ +            ++
Sbjct: 298  EMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------PKE 347

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
              +RL+ EL+VI  + F+ YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+
Sbjct: 348  VLERLETELSVIEPLGFASYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAIN 407

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKA
Sbjct: 408  PLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKA 467

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPS 507
            A++D  R L  P++  D++ K +P D     V L  I D S         FR+    +P 
Sbjct: 468  AVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPD 527

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            V +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ G
Sbjct: 528  VAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMG 587

Query: 568  LIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ +
Sbjct: 588  LMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGT 647

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DP 680
             MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D 
Sbjct: 648  AMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDE 707

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G
Sbjct: 708  ILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHG 767

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +
Sbjct: 768  YSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKD 827

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-AD 859
            K+  +  D R  +I ++PP VN   ++F      I + L A++ VG      I+ A   +
Sbjct: 828  KMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREEN 887

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P      F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+
Sbjct: 888  GPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQ 947

Query: 920  TNKHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
             N  +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L 
Sbjct: 948  ANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALE 1007

Query: 977  KMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1008 AESDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|317181143|dbj|BAJ58929.1| DNA polymerase III subunit alpha [Helicobacter pylori F32]
          Length = 1211

 Score =  962 bits (2487), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1078 (34%), Positives = 585/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFEDDASYFAYKAREGLKERLVLVPKEKH---DQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKSTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQAIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L AIKGVG    ++I+E     
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERTKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|210135627|ref|YP_002302066.1| DNA polymerase III subunit alpha [Helicobacter pylori P12]
 gi|210133595|gb|ACJ08586.1| DNA polymerase III alpha-subunit [Helicobacter pylori P12]
          Length = 1211

 Score =  962 bits (2487), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1078 (34%), Positives = 588/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A++    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL      K    + Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAKNEGLSFEDDASYFAHKAREGLKERLILVPKEKH---EQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+ MPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVGMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++ +  ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNDTARQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWYKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  +D + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMNDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E +  +  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVACYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L A+KGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F   +G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMEGGVKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|253563964|ref|ZP_04841421.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_2_5]
 gi|265765339|ref|ZP_06093614.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_16]
 gi|251947740|gb|EES88022.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_2_5]
 gi|263254723|gb|EEZ26157.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_16]
          Length = 1273

 Score =  962 bits (2486), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1146 (31%), Positives = 574/1146 (50%), Gaps = 134/1146 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F+  EF+          
Sbjct: 12   DFVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGP 71

Query: 61   -----------KACAAG-------------------------IQPIIGCQLDIDMQDNLK 84
                        A  AG                          +PIIGC++ +       
Sbjct: 72   KGEIKDLKKRIAAIEAGEVECADKDAEIADCKAKIADAEGRLFKPIIGCEMYVA---RRT 128

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVSR +         R   + L++   EGL
Sbjct: 129  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKG-YYMRPRTDRNELEKYH-EGL 186

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY--- 195
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+       ++ Y   
Sbjct: 187  IICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQ 246

Query: 196  --RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ +  + + L+ TN+  F++EE  EAHD L+ ++    +   +R   T   +
Sbjct: 247  VNVNKHLIEYSKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEW 306

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--------- 304
            +K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    +         
Sbjct: 307  MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 366

Query: 305  --------------------------------------KEEENELRNKAVAGLEVRLAQG 326
                                                  K E + L+     G +      
Sbjct: 367  KDLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDP 426

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                   + + ++RL FEL+++  M F GYFLIV DFI   +   + +GPGRGS AGS  
Sbjct: 427  L------SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAV 480

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L IT IDP+++ LLFERFLNPDR+S+PD DIDF  D R EV+R+V  KYG E+VA I
Sbjct: 481  AYCLQITKIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHI 540

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA 504
            IT+G++  K A++DV R  ++P ++ DRL KL+P+  P   ++L+ AI      + A  +
Sbjct: 541  ITYGTMATKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEAS 600

Query: 505  -DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFN 559
             DP V   ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+ 
Sbjct: 601  PDPLVRDTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYE 660

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTL 618
               IE  GLIK DFLGLKTL++++++++ +   +G+++D+  I  +D  TY L +   T+
Sbjct: 661  GSVIEDTGLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTI 720

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P++
Sbjct: 721  GTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVM 780

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  K
Sbjct: 781  EKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRK 840

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N
Sbjct: 841  NGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSN 900

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEAS 857
            +  I K   + +   +Q + P VN   + F V  N    + L A+KGVG    + IME  
Sbjct: 901  ITDITKLMDECKMMGVQTLGPDVNESNLKFTVNRNGNIRFGLGAVKGVGEAAVQSIMEER 960

Query: 858  A-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNI 908
              + PF  + DF  RV+    N++ +E L  AG  D F    R Q           L+ +
Sbjct: 961  KENGPFKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGETFLETL 1020

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +Y    + ++     ++F  +         +      N   R   E+ ++G Y S HPL
Sbjct: 1021 MRYGNRYQADKAAAVNSLFGGDNVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPL 1080

Query: 969  DVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            D Y  +L  +      E    + + G  I +  +V S ++  ++ G+  G     + +  
Sbjct: 1081 DEYAIVLEHVCNTHMSELDDKSALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGS 1140

Query: 1027 YEANFF 1032
             E  FF
Sbjct: 1141 AEIPFF 1146


>gi|108563880|ref|YP_628196.1| DNA polymerase III subunit alpha [Helicobacter pylori HPAG1]
 gi|107837653|gb|ABF85522.1| DNA polymerase III alpha-subunit [Helicobacter pylori HPAG1]
          Length = 1211

 Score =  962 bits (2486), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1078 (34%), Positives = 586/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL      +        + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNLSSKETKQR-----FHLCLFAKNQEGYENLMFLSSMAYLEG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++          R +       A+K    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+ + + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL      K      Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAKNEGLNFEDDASYFAHKAREGLKERLILVPKEKH---DQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +            A   + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +V  + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V + +           + L A+KGVG    ++I+E     
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERVKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F   +    +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMECGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|325267457|ref|ZP_08134113.1| DNA-directed DNA polymerase III alpha subunit [Kingella denitrificans
            ATCC 33394]
 gi|324981098|gb|EGC16754.1| DNA-directed DNA polymerase III alpha subunit [Kingella denitrificans
            ATCC 33394]
          Length = 1153

 Score =  961 bits (2485), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1041 (37%), Positives = 579/1041 (55%), Gaps = 35/1041 (3%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
             ++   P ++ L+ HS +S+ +G + +  +    A    PA+A+TD  N F  L+F +  
Sbjct: 8    TFMNAIP-YIPLRAHSEFSITDGIIRVGELAKTAAEYGYPAVALTDLMNTFGLLKFYKAC 66

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              AG++PI+G ++ I                      +LL+    GY RL EL++  +  
Sbjct: 67   RKAGVKPILGAEVRIANP----------KQPAQPFRALLLIRNHSGYVRLGELLTLAHTD 116

Query: 123  DQGK-QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
            +     + ++   WL E    GLI L+G   G I +A      + A +    +   F   
Sbjct: 117  EYRDLIAPQLQEEWLAEGDNSGLICLSGAQWGEIGQALLAGHEEQALQAAQKYAAWFEQA 176

Query: 182  LYVNLQ--RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y+ +Q    +       +  V+LA   +LP+VAT+ + FL  ED+ AHD  + +A   V
Sbjct: 177  FYLEVQRLPDKPEWETVVAGSVRLAEQLDLPVVATHATQFLQREDFTAHDARVCIAGGWV 236

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   RP   +   Y  +  EM   F+DLP AL N++EIA+RC+  L++    LP F   
Sbjct: 237  LADDKRPHDFSDSQYFAHPEEMAERFADLPAALANSLEIAKRCNVELELGKNFLPDFPTP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            E   +     + L   A  GL  R   L      +     +Y+ RLDFEL  I +M F G
Sbjct: 297  EGMPLN----DYLCVLANQGLRERMEVLYPDEAERNAKMPEYQARLDFELQTIIQMGFPG 352

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DFI WAK+N  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 353  YFLIVQDFINWAKQNGCPVGPGRGSGAGSLVAYALKITDLDPLKYALLFERFLNPERVSM 412

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ  R  VI YV+ KYG E V+QI+TFG+L +KA +RDVGR LQ+P+   DRL
Sbjct: 413  PDFDIDFCQANRGRVIEYVREKYGKEAVSQIVTFGTLSSKAVIRDVGRVLQLPFGLCDRL 472

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KL+P +   P+ LQA  +        +     + LL ++ KLE L R+   HA G++I 
Sbjct: 473  SKLVPVEANKPLGLQAALEAEPEIRTLIEAEEAEELLTLALKLEDLTRNLGMHAGGVLIA 532

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
               ++    +Y+      PV+ ++   +E+ GL+KFDFLGL+ LT+++ +  F+ Q RG 
Sbjct: 533  PGRIADFCGVYQADEHSSPVSMYDKGDVEEIGLVKFDFLGLRNLTIIEMAQQFIRQTRGE 592

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ I  DD   Y +     T  +FQ ESSGM+Q L+       E++IA VSLYRPGP
Sbjct: 593  DIDVNRIALDDQAAYQIFRDANTTAVFQFESSGMKQMLKTAHTTKFEELIAFVSLYRPGP 652

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            ++NI  +  R  G  K   +HPL++P+L+ T G+++YQEQVMQ AQ++ GYSL  AD+LR
Sbjct: 653  MENIPDFVARMKG-AKFEYMHPLLEPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLR 711

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM K +E F  GA+K  I +  A  IF+ + KFA YGFNKSHAAAYA +SY
Sbjct: 712  RAMGKKKPEEMVKHREIFAEGAAKQNIDRAKADEIFDYMEKFAGYGFNKSHAAAYAYVSY 771

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ--FNIQIMPPSVNTPCVDFKVG- 831
            QTAW+K HYP EF+AA+M+ E+DN +++K F  DA++    I+ +PP +N     F    
Sbjct: 772  QTAWLKAHYPAEFMAATMSSELDNTDQLKVFFDDAQRPVNGIRFLPPDINQSFYRFIPNA 831

Query: 832  DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            +N I Y+L AIKG G      I+ E  A+  F  L DFC R+  K +NRR +E+L+  GA
Sbjct: 832  NNEIRYALGAIKGTGEAVVNQIVAEREANGAFTGLLDFCERM-GKHINRRSVEALIRGGA 890

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R  LL ++D   + A+  +K+++     +F        D I ++     + +V
Sbjct: 891  FDALEPNRAMLLANVDLALQNAE--QKHQSANQGGLF-DMFDDVIDDIQMQPAPAWSEAV 947

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            +   E+  +GFY SGHP   Y+  +R++      +      G   R+A    S +   T+
Sbjct: 948  QLAEEKTAIGFYLSGHPFSPYREEVRRVAPVSLAKLSEQ-DGTQ-RVAGFATSIRSIMTK 1005

Query: 1011 KGSRIGWVTFSEPAKEYEANF 1031
            +G  +  +   +   + E   
Sbjct: 1006 RGKMLAIM-LEDDEAKQEVLV 1025


>gi|60680202|ref|YP_210346.1| putative DNA polymerase III alpha subunit [Bacteroides fragilis NCTC
            9343]
 gi|60491636|emb|CAH06388.1| putative DNA polymerase III alpha subunit [Bacteroides fragilis NCTC
            9343]
          Length = 1264

 Score =  961 bits (2485), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1146 (31%), Positives = 574/1146 (50%), Gaps = 134/1146 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F+  EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGP 62

Query: 61   -----------KACAAG-------------------------IQPIIGCQLDIDMQDNLK 84
                        A  AG                          +PIIGC++ +       
Sbjct: 63   KGEIKDLKKRIAAIEAGEVECADKDAEIADCKAKIADAEGRLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVSR +         R   + L++   EGL
Sbjct: 120  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKG-YYMRPRTDRNELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY--- 195
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+       ++ Y   
Sbjct: 178  IICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQ 237

Query: 196  --RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ +  + + L+ TN+  F++EE  EAHD L+ ++    +   +R   T   +
Sbjct: 238  VNVNKHLIEYSKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--------- 304
            +K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    +         
Sbjct: 298  MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 357

Query: 305  --------------------------------------KEEENELRNKAVAGLEVRLAQG 326
                                                  K E + L+     G +      
Sbjct: 358  KDLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDP 417

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                   + + ++RL FEL+++  M F GYFLIV DFI   +   + +GPGRGS AGS  
Sbjct: 418  L------SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAV 471

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L IT IDP+++ LLFERFLNPDR+S+PD DIDF  D R EV+R+V  KYG E+VA I
Sbjct: 472  AYCLQITKIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHI 531

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA 504
            IT+G++  K A++DV R  ++P ++ DRL KL+P+  P   ++L+ AI      + A  +
Sbjct: 532  ITYGTMATKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEAS 591

Query: 505  -DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFN 559
             DP V   ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+ 
Sbjct: 592  PDPLVRDTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYE 651

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTL 618
               IE  GLIK DFLGLKTL++++++++ +   +G+++D+  I  +D  TY L +   T+
Sbjct: 652  GSVIEDTGLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTI 711

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P++
Sbjct: 712  GTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVM 771

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  K
Sbjct: 772  EKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRK 831

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N
Sbjct: 832  NGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSN 891

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEAS 857
            +  I K   + +   +Q + P VN   + F V  N    + L A+KGVG    + IME  
Sbjct: 892  ITDITKLMDECKMMGVQTLGPDVNESNLKFTVNRNGNIRFGLGAVKGVGEAAVQSIMEER 951

Query: 858  A-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNI 908
              + PF  + DF  RV+    N++ +E L  AG  D F    R Q           L+ +
Sbjct: 952  KENGPFKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGETFLETL 1011

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +Y    + ++     ++F  +         +      N   R   E+ ++G Y S HPL
Sbjct: 1012 MRYGNRYQADKAAAVNSLFGGDNVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPL 1071

Query: 969  DVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            D Y  +L  +      E    + + G  I +  +V S ++  ++ G+  G     + +  
Sbjct: 1072 DEYAIVLEHVCNTHMSELDDKSALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGS 1131

Query: 1027 YEANFF 1032
             E  FF
Sbjct: 1132 AEIPFF 1137


>gi|161869391|ref|YP_001598558.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 053442]
 gi|161594944|gb|ABX72604.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 053442]
          Length = 1109

 Score =  960 bits (2483), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1002 (38%), Positives = 564/1002 (56%), Gaps = 34/1002 (3%)

Query: 41   QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
             PA+ I+D  N F  ++F +   +AGI+PI    + I   +                  +
Sbjct: 1    MPALGISDLMNEFGLVKFYKACRSAGIKPIGAADVWIGNPNAPDK----------PFRAM 50

Query: 101  LLVSTAEGYQRLIELVSRMYL-LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            L++    GY RL EL++  Y+  D+      +   WL+     GLI L+G   G +    
Sbjct: 51   LIIRNDAGYLRLSELLTEAYVGKDRNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNL 110

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNS 217
               +   A    L +   F D  Y+ LQR   R       S  V+LA    LP+VAT+ +
Sbjct: 111  LNGNEDAARAAALKYAAWFPDAFYMELQRLPERPEWEACVSGSVKLAEELGLPVVATHPT 170

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVE 276
             F+S +D+ AH+  + +A   V++ K RPR  TPD +      M+  F+DLPEALENTVE
Sbjct: 171  QFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPDQFFIPPETMLERFADLPEALENTVE 230

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYH 333
            IA+RC+  + +    LP F   +        ++ L   +  GL+ R   L      +   
Sbjct: 231  IAKRCNLHITLGKNFLPLFPTPDG----LSRDDYLIKLSNKGLQERMVQLYPDEAERAAK 286

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              +Y++RLDFELN+I +MKF GYFLIV DFI WAK +  PVGPGRGSGAGS+ AY+L IT
Sbjct: 287  MPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKIT 346

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            D+DPL+++LLFERFLNP+R+SMPDFD+DFCQ  R  VI YV+ KYG + V+QI+TFG++ 
Sbjct: 347  DLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYVREKYGAKAVSQIVTFGTMS 406

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLL 512
            +KA +RDVGR L++P+   D+L KLIP +   P+ L  A+  + + +E   A    D L+
Sbjct: 407  SKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELI 465

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             +++KLE L R    HA G++I    +S   P+Y+   S  PV+ ++   +E  GL+KFD
Sbjct: 466  TLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFD 525

Query: 573  FLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGL+ LT+++ + + +       +D+  IP DD   Y +     T  +FQ ES+GM++ 
Sbjct: 526  FLGLRNLTIIEMAQNNIKNTTGDIIDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKM 585

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            L+       E++IA VSLYRPGP+DNI  +  R  G+E    IHPL++ +L  T G+++Y
Sbjct: 586  LKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVY 644

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQ AQ++ GYSL  AD+LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF 
Sbjct: 645  QEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFN 704

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             + KFA YGFNKSHAAAYA+ISYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R 
Sbjct: 705  YMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRA 764

Query: 812  FNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFC 869
              I+ +PP +N     F    + +I Y+L AIKG G      I  A      F  L DFC
Sbjct: 765  NGIEFLPPDINESDYRFTPYPDMKIRYALGAIKGTGEAAVESITSARQSGGKFTGLLDFC 824

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             RV  + +NRR LE+L+  GA D    +R  LL ++D     A   +K        +F  
Sbjct: 825  ERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLANIDLAMNNAD--QKAANTNQGGLFDM 882

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
             +      + L    + + S +   E+ V+GFY SGHP   Y   +R++  +   +    
Sbjct: 883  MEDAIEP-VRLVDAPMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ 941

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
               +++RLA  V + +    ++G  I +V+  + + + E   
Sbjct: 942  ---DSVRLAGFVTAVRTMMGKRGK-IAFVSLEDLSGQVEIMV 979


>gi|298246262|ref|ZP_06970068.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963]
 gi|297553743|gb|EFH87608.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963]
          Length = 1172

 Score =  960 bits (2483), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/1054 (31%), Positives = 550/1054 (52%), Gaps = 50/1054 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL VH+ YSLL+G   +  ++ +        +AITD   ++ ALEF +   A G+ P
Sbjct: 4    DFAHLHVHTEYSLLDGLSHIKKLVQQTKELGMQHLAITDHGAMYGALEFYKACRAGGVHP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  +       M +  K        ++L+     GY+ L++L +            
Sbjct: 64   IIGCEAYLTE----DMQDHSKRFSDDYYHLLLIAKNNTGYRNLMKLTTIANTEG-YHLRP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI    L +   EGLI+ +G  S  I +       Q A++    ++ +F  + LY+ +Q 
Sbjct: 119  RIDKKVLAQYA-EGLIVTSGCLSAEIPKLLLAGKQQEAQQAARWYQDVFGPENLYLEIQE 177

Query: 189  HRG--------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            H G                + Q+     +PL+ATN+  ++  ED ++HDVL+ +     +
Sbjct: 178  HHGVWDNDTPSPQARLNQMLYQMHKDLHIPLIATNDLHYIRAEDAQSHDVLLCIQTGRQI 237

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
              + R +  + ++YLK+ +EM+ +F +LP+AL NTV +A +C      H   LP+    +
Sbjct: 238  DAQKRFKFDSREYYLKSPAEMLQLFPELPDALSNTVRLAEQCEVDPLAHKASLPQV---Q 294

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                     + L    + G++ R        G   +  +++LD+E ++I +M ++ YFL+
Sbjct: 295  IPPQYASANDYLYALCLEGVKYRF-------GELTEPIKRQLDYEFSIIMQMGYATYFLV 347

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D++ +A+ + I     RGS AGS+ AY L IT++DPLR+ LLFERFLNP+R  MPD D
Sbjct: 348  VWDYVNYARSHGIRCS-ARGSAAGSLLAYVLGITNVDPLRYQLLFERFLNPERADMPDID 406

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  DRR+EVI YV  KYG + VAQ++TF ++ AK +++DV RA+       DR+ +LI
Sbjct: 407  MDFPDDRREEVINYVAQKYGVDHVAQMVTFNTMAAKQSVKDVARAMG-RQDVGDRITRLI 465

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P  P   +    +            +P    +++ + +LEG  R+   HAAG++I   PL
Sbjct: 466  PTGPRITLRGS-LESVRDLTSTYEQNPEAREIIDQALELEGAVRNTGIHAAGVIISSEPL 524

Query: 540  SQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
                P+     RD      +TQF    +E+ GL+KFDFLGL  LT++  +L F+ + RG 
Sbjct: 525  ELFAPLQLRDFRDASKGF-ITQFEQSHLEELGLVKFDFLGLSNLTIVDNTLKFIKEARGE 583

Query: 595  KVDLSLIPFD---DHE-------TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            ++D+  +P D   D +        + LL+   T GIFQLE + MR+ ++ ++P  +EDI+
Sbjct: 584  EIDMEKLPLDLTGDPKQDRKRAKAFELLSAGETTGIFQLEGAKMREYIKQLKPTSVEDIM 643

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            A+++LYRPGP+++I  + + K+G+  +  +   +   L+E+ G+I+YQ+QV+ IA  L+G
Sbjct: 644  AMIALYRPGPMESIPYFIDAKHGRRAVQYLDERLKTWLEESYGIIVYQDQVLLIAVNLAG 703

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            +S  + +  R+A+ KKI  E++  K  FI G   NG+S  IA  +FE +  F  YGFNK+
Sbjct: 704  FSWGKVNKFRKALSKKIMHEVEGYKGDFIQGCIHNGMSPKIAEELFEQIKPFGGYGFNKA 763

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAA+YAV+++ TA++K +Y  EF+AA+MT E  +  KI     + ++  ++I+ P VN  
Sbjct: 764  HAASYAVVAFSTAYLKANYTAEFMAATMTTEAADARKIANAIAECKRMGVKILGPDVNKS 823

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
               F V +  + + L AIKG+G      I+EA  A  PF SL DFC+RV+ + + +  LE
Sbjct: 824  SKGFTVEEGGVRFGLLAIKGIGDAPIDAIIEARQAKGPFKSLADFCTRVNPQSVGKGALE 883

Query: 884  SLVFAGALDCFG-YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITL 940
            +L  AGALD  G   R  LL SL+   +Y +   + + +   ++F    E G        
Sbjct: 884  TLAKAGALDSLGRGQRHILLASLERAMQYGKGEREAQEHGLLSLFGDIEEHGGDLAFSLA 943

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK-GYEESVATIRGNNIRLAA 999
                        + E+ ++G Y + HPL     IL   G+     +    + G  + +  
Sbjct: 944  TNVEEIPMQQLLDWERELIGVYITQHPLTHLSDILASKGVTHHLGQITDELNGQKVIVGG 1003

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            M+   ++  T+KG  +  +   +         FP
Sbjct: 1004 MIKEARRITTKKGDDMCVIQLEDMYGTVGVTVFP 1037


>gi|167765014|ref|ZP_02437135.1| hypothetical protein BACSTE_03408 [Bacteroides stercoris ATCC 43183]
 gi|167697683|gb|EDS14262.1| hypothetical protein BACSTE_03408 [Bacteroides stercoris ATCC 43183]
          Length = 1274

 Score =  960 bits (2483), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1147 (31%), Positives = 577/1147 (50%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+          
Sbjct: 12   DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 71

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +PIIGC++ +       
Sbjct: 72   KGEIKDLKKRIAGIESGEIECEDKEAEIAACRAKITEAENKLFKPIIGCEMYVA---RRT 128

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVSR + +       R   + L++   EGL
Sbjct: 129  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTMG-YYMRPRTDRNELEKYH-EGL 186

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +    +  + AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 187  IVCSACIGGEVPKKIINDQLEEAEEAIRWYKNLFGDDYYLELQRHKATVSRANHEAYPLQ 246

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   +++++ A  + + ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 247  QKANAKLLEYARKYNIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 306

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++E       
Sbjct: 307  MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRRKYTE 366

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L   A  G   RL   
Sbjct: 367  KDLFDEFTQDENGNVVLDEEAAKAKIKRLGGYEKLYRIKLEADYLAKLAFDGA-KRLYGD 425

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
             +     + + ++RL FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS 
Sbjct: 426  PL-----SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSA 480

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V  KYG E+VA 
Sbjct: 481  VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAH 540

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRL KL+P+  P   ++L  AIA     + A  
Sbjct: 541  IITYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEA 600

Query: 504  A-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558
            + DP V   L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+
Sbjct: 601  SPDPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 660

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL++++++++ +   RG+ +D+  I   D  TY L     T
Sbjct: 661  EGSVIEDTGLIKMDFLGLKTLSIIKEAVENVRLHRGLSLDIDKISIKDPATYKLYCDGRT 720

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+
Sbjct: 721  IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPI 780

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI+G  
Sbjct: 781  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQ 840

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + 
Sbjct: 841  KNGHDAKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLS 900

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEA 856
            ++  I K   + +   I+++ P VN   + F V       + L A+KGVG    + IME 
Sbjct: 901  DITTITKLMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVQSIMEE 960

Query: 857  SA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907
             A + P+  + DF  RV+    N++ LE L  AG  D F    R Q           ++ 
Sbjct: 961  RAKNGPYTGIFDFVQRVNLNACNKKNLECLALAGGFDSFPELKREQYFAVNTKNEVFIET 1020

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         + +    +   R   E+ ++G Y S HP
Sbjct: 1021 LVRYGNRYQADKAAAVNSLFGGENVVDIATPEIPQAERWSDLDRLNKERDLVGIYLSAHP 1080

Query: 968  LDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  +L  +      E      + G  I +  +V S ++  ++ G+  G     + + 
Sbjct: 1081 LDEYAVVLEYVCNTHMAELEDKTALVGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSG 1140

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1141 SAELPFF 1147


>gi|282853897|ref|ZP_06263234.1| DNA polymerase III subunit alpha [Propionibacterium acnes J139]
 gi|282583350|gb|EFB88730.1| DNA polymerase III subunit alpha [Propionibacterium acnes J139]
          Length = 1190

 Score =  960 bits (2483), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1079 (31%), Positives = 539/1079 (49%), Gaps = 63/1079 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDMQDNLKMT-----------------NQGKTPFPTVPSIVL 101
                    ++PIIG +  +                           +  +       + +
Sbjct: 60   YDGDQNPLVKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                +EG   L  L S            R+    L      G+I  TG  SG +      
Sbjct: 120  WAKDSEGLHNLFRLSSLASYEG-YYMKPRMDRE-LMGQYPGGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ +F  +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
                   +V   +  +P+F   E +     +E+ LR K   GL+ +            ++
Sbjct: 298  EMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------PKE 347

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
              +RL+ EL+VI  + F+ YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+
Sbjct: 348  VLERLETELSVIEPLGFASYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAIN 407

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKA
Sbjct: 408  PLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKA 467

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPS 507
            A++D  R L  P++  D++ K +P D     V L  I D S         FR+    +P 
Sbjct: 468  AVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPD 527

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            V +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ G
Sbjct: 528  VAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMG 587

Query: 568  LIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ +
Sbjct: 588  LMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGT 647

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DP 680
             MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D 
Sbjct: 648  AMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDE 707

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G
Sbjct: 708  ILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHG 767

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +
Sbjct: 768  YSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKD 827

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-AD 859
            K+  +  D R  +I ++PP VN   ++F      I + L A++ VG      I+ A   +
Sbjct: 828  KMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREEN 887

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P      F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+
Sbjct: 888  GPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDFMGHSRRGLMAVYGQAVDAVIDIKRNQ 947

Query: 920  TNKHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
             N  +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L 
Sbjct: 948  ANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALE 1007

Query: 977  KMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1008 AESDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|323356540|ref|YP_004222936.1| DNA polymerase III, alpha subunit [Microbacterium testaceum StLB037]
 gi|323272911|dbj|BAJ73056.1| DNA polymerase III, alpha subunit [Microbacterium testaceum StLB037]
          Length = 1154

 Score =  960 bits (2482), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1045 (34%), Positives = 547/1045 (52%), Gaps = 47/1045 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L+GA  +  ++ +      PAIA+TD  N F+A EF + A  AGI+PIIG +  +    
Sbjct: 1    MLDGAARIGPMVQEAVKQGMPAIAVTDHGNTFAAYEFYKTAKDAGIKPIIGIEAYVTPGT 60

Query: 82   NLKMTNQGKTPFPT-----------VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +     + +   P               + LL  T EG   L  L S+  +        R
Sbjct: 61   HRSDKTRVRWGSPEQQSDDVSGSGAYTHMTLLSETTEGMHNLFRLSSKASMEG-YYFKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            +    LQ   + GLI  TG  SG +         + A      F+ +F  +  +  +  H
Sbjct: 120  MDRELLQTY-SRGLIATTGCPSGEVQTRLRLGQYEAARAAAAEFQDIFGKENYFAEIMDH 178

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +R   S +++++    +PL+ TN+  +  + D  +H  L+ V   + +    R + 
Sbjct: 179  GLSIERRVMSDLLKISKDLNIPLLGTNDLHYTHQHDATSHAALLCVQSGSTLDDPKRFKF 238

Query: 249  TPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D +Y+K+ +EM  +F D PEA +NT+ IA RC       A  +PRF     +     E
Sbjct: 239  DGDGYYVKSPAEMRQVFRDNPEACDNTLLIAERCDVEFDTSANYMPRFPVPPGE----TE 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + +  +   GL+ R   G           R++ ++E +VI +M F GYFL+VADFI WA
Sbjct: 295  GSWMIKEVENGLQDRYPGGI------PDAVRKQAEYETDVILQMGFPGYFLVVADFINWA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N I VGPGRGSGAGS+ AYA+ ITD+DPL+  L+FERFLNPDR+SMPDFD+DF   RR
Sbjct: 349  KNNGIRVGPGRGSGAGSMVAYAMKITDLDPLQHGLIFERFLNPDRVSMPDFDVDFDDRRR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHP 486
             EVI+YV  KYG ERVAQI+T+G+++AK AL+D GR L  P+S  D+L K +P       
Sbjct: 409  GEVIQYVTEKYGDERVAQIVTYGTIKAKQALKDAGRVLGFPFSMGDKLTKAMPPAVMGKD 468

Query: 487  VSLQAI--------ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            + L  +         +   FR     DP    + + +  LE L R    HAAG+++   P
Sbjct: 469  MPLDGMFNPEHPRYKEAGEFRTLIETDPEAKTVFDTALGLENLKRQWGVHAAGVIMSSEP 528

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD 597
            L  ++P+ R  +    VTQF+    E  GLIK DFLGL+ LT++  +LD + A RG  + 
Sbjct: 529  LIDIIPIMRREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIINDALDNIEANRGHPLV 588

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            L  +  DD  +Y LL    TLG+FQL+   MR  L  M+PD  EDI A+++LYRPGP+  
Sbjct: 589  LEDLALDDAASYELLARGDTLGVFQLDGGPMRSLLRLMRPDNFEDISAVLALYRPGPMGV 648

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            ++ + Y  RKN +++I  IHP ++     +L  T G+I+YQEQVM +AQ ++GY+L +AD
Sbjct: 649  NSHINYALRKNKQQEIEPIHPELEEPLADILDTTYGLIVYQEQVMAVAQRVAGYTLGQAD 708

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK K E+DKQKE F  G ++ G        ++++L  FADY FNK+H AAY +
Sbjct: 709  LLRRAMGKKKKSELDKQKEIFFGGMTERGYGDVAQQTLWKVLESFADYAFNKAHTAAYGL 768

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SY TA++K HYP E++AA +T   D+ +K+  +  + R+  I+++PP VN     F   
Sbjct: 769  VSYWTAYLKAHYPAEYMAALLTSVGDSKDKMAVYLNECRRMGIRVLPPDVNESIRFFAAV 828

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I + L A++ VG      I+ A  D  + S  DF ++V     N+R +ESL+ AGA 
Sbjct: 829  GEDIRFGLGAVRNVGANVVDGIVAARQDAKYTSFHDFLAKVPMHVANKRTVESLIKAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI-FAHEKGTFSDKITLEKFSVENSSV 950
            D  G +R  LL+  ++  + A   ++   N      F            + +        
Sbjct: 889  DTLGSTRRALLEIHEDACEGAVSDKRREANGEVGFDFDSLWDEPQQVTKVPERPEWTKKD 948

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI---RGNNIRLAAMVVSKQQK 1007
            +   E+ +LG Y S HPL   +  L K       + +++     G+ + +A ++ S Q +
Sbjct: 949  KLAFEREMLGLYVSDHPLAGLEVPLAKHASTSIHDLLSSEDVQDGDQVTVAGLLTSVQHR 1008

Query: 1008 KTR-KGSRIGWVTFSEPAKEYEANF 1031
              +  G+  G VT  +   E    F
Sbjct: 1009 VAKQSGNPYGMVTVEDFNGEVTVMF 1033


>gi|308752748|gb|ADO46231.1| DNA polymerase III, alpha subunit [Hydrogenobacter thermophilus TK-6]
          Length = 1158

 Score =  960 bits (2481), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1067 (36%), Positives = 582/1067 (54%), Gaps = 71/1067 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL +H+ YSLL+GA+ + ++  K       A+AITD  NLF  LEF +    
Sbjct: 1    MLTMAEFVHLHLHTQYSLLDGAIKIKDLAKKARELGYKAVAITDHGNLFGILEFYRSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
             GI+PIIG +             +             ++L+     G + L++L S  Y 
Sbjct: 61   EGIKPIIGMEAYFTTGSRHDRKGKASEDNITDRYNHHLILIAMNDTGLKNLMQLSSISYQ 120

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                    RI    L +   EGLI +T    G           + A   +  FK LFG+ 
Sbjct: 121  EG-FYYKPRIDYEVLSQ-HCEGLIAITACLKGVPTHYASLGDEEKATHWVKKFKDLFGEN 178

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            LY+ LQ ++  ++   ++ ++ +A    + L+ATN+S +L+ +D  AH VLMAV     +
Sbjct: 179  LYLELQSNQLPEQEIANRILINIAKKMGVKLIATNDSHYLNPDDRLAHQVLMAVQMKKTL 238

Query: 241  SQKDRP----RVTPDHYLKNRSEMVSIF----SDLPEALENTVEIARRCSFILQVHAPIL 292
             +  +           +     E+   F        EAL+NT+E+A +     ++     
Sbjct: 239  MEIKQESAIKCSNEGLHFAGPEEVWEKFKGKFEGWEEALKNTLEVAEKVQDSFELLENRG 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
              F + + +D  K     LR+ AV GL  R+ QG       + +Y  RL++EL V+ RM 
Sbjct: 299  YLFPKYDTED--KTTAEFLRHLAVKGLRQRIQQGL---AKDSPEYWNRLEYELEVVFRMG 353

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFLIV DFI WAK  +IPVGPGRGS AGS+ A++L ITDIDP++  LLFERFLNP+R
Sbjct: 354  FEGYFLIVQDFINWAKSQSIPVGPGRGSAAGSLLAFSLGITDIDPIKHGLLFERFLNPER 413

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD D+DFC ++RD+VI YV++KYG E VAQIIT+  ++AK  LRDV RAL +PYS  
Sbjct: 414  ISMPDIDVDFCMEKRDKVIEYVKSKYGEENVAQIITYNVMKAKQTLRDVARALGVPYSVA 473

Query: 473  DRLCKLIPNDP--AHPVSLQAIADDS--------------------RFREARLADPSVDR 510
            D L KLIP        +SL+ +                        +FR+    +P +  
Sbjct: 474  DSLAKLIPQGDVQGTWLSLEEMYLVPIKELLDKYGHHRRDIEDHVSKFRKMCSENPEIKT 533

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            L+EI+ KLEGL RH S HAAG+VI   PL + +P+Y D +  +  TQF+M  +E+ GLIK
Sbjct: 534  LVEIALKLEGLTRHTSLHAAGVVISPLPLRERIPLYYD-KDQVLATQFDMVNLEELGLIK 592

Query: 571  FDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             DFLGLKTLT L++    + +R  V ++   +P DD   Y LL    T G+FQLES GM+
Sbjct: 593  MDFLGLKTLTELERMKQLVEERHKVSINYLSLPLDDPLVYELLRKGNTTGVFQLESVGMK 652

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQG 687
              L+ ++PD  +DI+A+++LYRPGP+ + +V  Y NRK+GKE++  I P ++P+LK+T G
Sbjct: 653  NLLKRLEPDSFDDIVAVLALYRPGPLKSGLVDSYINRKHGKEQVDYIFPELEPVLKDTYG 712

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQVM+I+Q+L+G++  +AD LR+A+GKK KE M + KE+FI GA + G ++   +
Sbjct: 713  IIVYQEQVMKISQVLAGFTPGQADTLRKAIGKKKKEVMQEMKEKFIRGALERGYNQEKVI 772

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++  + +FA Y FNKSH+ AY  ISY TA+MK HYP EF    ++ E  + +K     +
Sbjct: 773  KLWNDIEEFASYSFNKSHSVAYGYISYWTAYMKAHYPEEFFVVKLSTEKSD-KKFINLIK 831

Query: 808  DARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            DA+ F  +I+ P +N   VDF +    +I + LA IKGVG  TAR I+EA  +  +  L 
Sbjct: 832  DAKSFGFEILQPDINESHVDFTIESKGKIRFGLARIKGVGEDTARSIVEAR-NGRWKGLG 890

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF   +D +K+N+RVLE+L+ AGA D  G SR +LL  +D          K       ++
Sbjct: 891  DFLKSIDQRKVNKRVLEALIKAGAFDFTGESREKLLSYMDKA-------SKGGVLPLGDL 943

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            F                 VE      + E+ VLG Y S HP+D ++ +L   G   + E 
Sbjct: 944  FGT--------------KVEQKVDPLKYEKEVLGIYISKHPVDPFEKLLS--GKVKWLEE 987

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  ++        +V   + KKT+ G+ +      +      A  FP
Sbjct: 988  LEELQEGTYNFVGVVSDLKVKKTKNGTYMATFNLIDKTGIGHAVAFP 1034


>gi|291276386|ref|YP_003516158.1| DNA polymerase III subunit alpha [Helicobacter mustelae 12198]
 gi|290963580|emb|CBG39412.1| DNA polymerase III, alpha chain [Helicobacter mustelae 12198]
          Length = 1184

 Score =  960 bits (2481), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1061 (35%), Positives = 592/1061 (55%), Gaps = 49/1061 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+ HL +H+ YS+L+GA  + N++ ++      ++++TD  N+F A+EF +   A GI+P
Sbjct: 2    SYTHLHLHTEYSMLDGANKIKNLIQRLKELGMSSVSMTDHGNMFGAIEFYKSMKAEGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +   + L  + +GK  F     + L      GY+ L+ L S  ++        
Sbjct: 62   IIGMEAYVHNYEELN-SKEGKQRF----HLCLYAKNEVGYKNLMFLSSMAFIEG-FYYYP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRA---------FFFNSSQVAEKRLLTFKKLFGD 180
            RI    L+E  +EGL+  +    G ++                 ++A++  L ++ +FG+
Sbjct: 116  RISKKLLRE-HSEGLVASSACLGGEVNFHLNTSERNKKRGAKGIEMAKEVALEYRDIFGE 174

Query: 181  RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ + RH   +    +  +++++    + L+ATN++ ++S++D++  +V+  +     
Sbjct: 175  DFYLEIMRHGINHQENIDDLIIRISQETGIKLIATNDAHYISQKDHKMQEVVQTLGQGKT 234

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++  +R + T  + Y+K+  EM  IF+D+PEAL NT EI  +C+  +++           
Sbjct: 235  LNDPNRLKHTVFEFYVKSSEEMERIFADIPEALRNTQEIVEKCNLEIELKDEKTNPPTPP 294

Query: 299  ECDDIQKEE----------ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                 ++             +    K+  GLE  L      K    Q YR RL+ E+ +I
Sbjct: 295  TFIFTKEYAKLEGQEIDNDADFFAYKSRQGLEEYLKIIPQEKH---QIYRDRLEEEIRII 351

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +MKF GY LIV DFI +AK  NIPVGPGRGS AGS+ A+ L ITDIDP++++LLFERFL
Sbjct: 352  TQMKFPGYMLIVWDFIHFAKSQNIPVGPGRGSAAGSLVAFCLKITDIDPMKYNLLFERFL 411

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D DFCQ RR EVI Y+  KYG   VAQ+ITFG L AK A+RDV R L MP
Sbjct: 412  NPERVSMPDIDTDFCQRRRGEVIEYMIQKYGKYNVAQVITFGKLLAKNAIRDVARVLDMP 471

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
                D   KLIPN     +   A A + +  E    +P    + E + +LEGL R+A  H
Sbjct: 472  LKDADAFAKLIPNQLGIKLE-DAHALEPKIEEFMNQNPKARDVWEYALQLEGLNRNAGKH 530

Query: 529  AAGIVI-GDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            AA IV+  ++ L    P+       D  VTQ++MK++E   LIKFDFLGLKTLT++  +L
Sbjct: 531  AAAIVLDSEKELWHKTPLCTVGKSDDSLVTQYSMKYLEPVDLIKFDFLGLKTLTVVHDAL 590

Query: 587  DFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            + + +R   ++D   +  DD + Y  + +  TLGIFQ+ESS  +   + ++P   EDIIA
Sbjct: 591  ELIKKRYGKEIDFLSVDVDDKKVYETIQSGDTLGIFQIESSMFQGLNKRIKPSNFEDIIA 650

Query: 646  LVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            +++L RPGP+++ +V  + NRK+G E+I  +   ++P+LK T G I+YQEQVMQI Q + 
Sbjct: 651  IIALGRPGPMESGMVDDFINRKHGLEEITYMFDALEPILKPTYGTIVYQEQVMQIVQTIG 710

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G+SL  AD++RRAMGKKIKEEM++ K  F +GA KNG  +  A +++EL+ KFA YGFNK
Sbjct: 711  GFSLGGADLVRRAMGKKIKEEMERLKSDFATGAEKNGFDRAKAEDLWELIVKFAGYGFNK 770

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA+I++QTA++KT+Y  EF+AA ++ E   +E + K+  + ++ ++  M P VN 
Sbjct: 771  SHSAAYAMITFQTAYLKTYYKEEFMAALLSSESGKIESVAKYINEVKKMDMDFMSPHVNI 830

Query: 824  PCVDFKV--------GDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDS 874
               +F V        G  +I + L+AIKGVG    ++I+        F SLEDF SRVD 
Sbjct: 831  SEKNFGVANFEHEGMGIKKIIFGLSAIKGVGDEPIQNIISVREKGGDFKSLEDFISRVDF 890

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
             K+ +RVLE L+ +G LD  GYSR  +L++LD I +  +  +K + +  + +F   +   
Sbjct: 891  SKITKRVLEPLIKSGGLDGLGYSRACMLKNLDAICEAGRRKDKAKESMAQGLFGGLEDEV 950

Query: 935  SDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIR 991
               +  +   F         + E   LG Y SGHPL+ Y+  +  + G            
Sbjct: 951  EQNVRFDFSNFEEFPLRDLLDLEFECLGIYVSGHPLEEYRESIEGLQGFVPSVSLGEVEE 1010

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   +A  V    +K ++     G+V   +   + E  FF
Sbjct: 1011 DSYCLIAGKVSEITRKMSKSNKPYGYVNLLDLYGKIEIMFF 1051


>gi|253572097|ref|ZP_04849501.1| DNA polymerase III alpha subunit [Bacteroides sp. 1_1_6]
 gi|251838277|gb|EES66364.1| DNA polymerase III alpha subunit [Bacteroides sp. 1_1_6]
          Length = 1267

 Score =  960 bits (2481), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1142 (31%), Positives = 574/1142 (50%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +PIIGC++ +       
Sbjct: 63   KGEIKDLKKRIAGIEAGTVECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVS  +         R   S L+    EGL
Sbjct: 120  MDLKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELERYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ----- 199
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+        +     
Sbjct: 178  IVCSACLGGEVPKRITAGQFDEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237

Query: 200  ------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  + + A  + + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKYLQEYARKYNIKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE-------------- 299
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E              
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKYTE 357

Query: 300  ------------CDDIQKEEENELRNKAVAGLEV------------RLAQGAIAKGYH-- 333
                         + +  EEE + + K + G E             +LA     + Y   
Sbjct: 358  KDLFDEFTQDENGNVVLSEEEGQAKIKRLGGYEKLYRIKLEGDYLAKLAFDGAKRIYGDP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
             +++ ++RL+FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS  AY L 
Sbjct: 418  LSEEVKERLNFELYIMKTMGFPGYFLIVQDFINAARSELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+  P   ++L  AI      + A  + DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R +++D+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRSLEIDVDQIDITDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEASA-DKP 861
            K   + +   IQ + P VN   + F V  +    + L A+KGVG    + I+E    + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVQSIVEERNTNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              ++++     ++F            + +         R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQEDKRAAINSLFGGANVVDIATPEIPQGVERWGDLERLNKERDLVGIYLSAHPLDEFA 1077

Query: 973  PILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      +    A + G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLDHVCNTRMADLEDKAALAGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|160885119|ref|ZP_02066122.1| hypothetical protein BACOVA_03117 [Bacteroides ovatus ATCC 8483]
 gi|156109469|gb|EDO11214.1| hypothetical protein BACOVA_03117 [Bacteroides ovatus ATCC 8483]
          Length = 1268

 Score =  960 bits (2481), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1142 (31%), Positives = 572/1142 (50%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +PIIGC++ +       
Sbjct: 63   KGEVKDLKKRIAGIEAGTIECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L     GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDLKEGKPDQSGYHLIVLAKNETGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +         AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IICSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLELQRHKATVPRANHECYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A    + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKHLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE------ 307
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++        
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357

Query: 308  -------------------------------ENELRNKAVAG-LEVRLAQGAIAKGYH-- 333
                                            ++L    + G    +LA     + Y   
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
              ++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRLCKL+P+  P   ++L  AIA     + A  + DP +
Sbjct: 538  MATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASSDPLL 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R V+VD+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDISDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPIMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIM-EASADKP 861
            K   + +   IQ + P VN   + F V  +    + L A+KGVG    + IM E   + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGDIRFGLGAVKGVGEAAVQSIMEERRKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              + ++     ++F  E         + +     +   R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077

Query: 973  PILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      +    A + G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|298207508|ref|YP_003715687.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus
            HTCC2559]
 gi|83850144|gb|EAP88012.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus
            HTCC2559]
          Length = 1454

 Score =  960 bits (2481), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/1075 (32%), Positives = 560/1075 (52%), Gaps = 72/1075 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------ 63
            +F HL  HS +S+L+  +S+ +++D   A+  P +A+TD  N+  A  F +         
Sbjct: 261  TFSHLHNHSQFSVLQSTMSIQDLVDNAIANNMPGVALTDHANMMGAFHFVRAVNTYNKSL 320

Query: 64   -------AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
                      ++ I+GC+  +    N       K+       IV+L  T +GY  L ++ 
Sbjct: 321  AGSEDLDKKPLKAIVGCEFQVCEDHN------DKSRQDNGYQIVMLAKTKKGYHNLAKMA 374

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S  Y         RI  + +++   E +I+LTG   G +         + AE+ LL +K 
Sbjct: 375  SIAYTEG-FYYVPRIDRAVVEKY-KEDVIVLTGNLYGEVPSKVLNVGEKQAEESLLWWKS 432

Query: 177  LFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             F + LY+ + RH   D  R ++ +++LA  H++ +VA+NN+ + ++ D  AHD+L+ V 
Sbjct: 433  HFEEDLYMEIMRHDQEDERRANEVLIKLAKAHDIKIVASNNTYYTAKGDANAHDILLCVK 492

Query: 236  HSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
                 S+               ++Y K+  EM ++F DLPEA+ NT ++  +        
Sbjct: 493  DGEKQSKPIGRGRGYRYGLPNQEYYFKSNDEMKALFKDLPEAITNTQDVVNKIEGFDLAR 552

Query: 289  APILPRFIEKE--------CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
              +LP F   E         D  ++ E   L++    G + R        G    + ++R
Sbjct: 553  DVLLPAFEIPEKFKDSKDLDDGGKRGENAFLKHLTYEGAKERY-------GEITPEIKER 605

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            LDFEL++I +  + GYFLIV DFI+ A+  ++ VGPGRGS AGS  AY L IT+IDP+++
Sbjct: 606  LDFELSIIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSAVAYCLKITNIDPIKY 665

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNPDR+SMPD DIDF  + R  V+ YV  KYG ++VAQIIT+G++ AK+A+RD
Sbjct: 666  DLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIKKYGSDQVAQIITYGTMAAKSAIRD 725

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD-PSVDRLLEI----- 514
             GR L +P  + D++ KLIP D      +  + +    R+ R  D   V  LL I     
Sbjct: 726  TGRVLDLPLHETDKIAKLIP-DMTKLGKIFGVDEKELSRKFRSEDFEGVKELLSISGGND 784

Query: 515  --------SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
                    ++ LEG  R+   HA G++I    +S  VP+ R    +L +TQF+   +E A
Sbjct: 785  LQAQTVNQARVLEGSVRNTGVHACGVIITPDDISNFVPIARSKDGELYITQFDNSVVEDA 844

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K DFLGLKTLTL++ ++  +  + GV++D    P DD +TY L     T+GIFQ ES
Sbjct: 845  GLLKMDFLGLKTLTLIKDTVKIVKAKHGVQLDPDSFPLDDEKTYELFQRGETVGIFQYES 904

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
             GM++ ++ ++P   +D+IA+ +LYRPGP++ I  +  RK+G E I    P ++  LKET
Sbjct: 905  PGMQKHMQSLKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGDEDIEYDLPAMEEYLKET 964

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+ +YQEQVM ++Q L+ ++  EAD+LR+AMGKK K  +DK K +FI  AS  G     
Sbjct: 965  YGITVYQEQVMLLSQKLADFTKGEADILRKAMGKKQKAVLDKMKPKFIEQASAKGHDAEK 1024

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               +++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA ++  M N++++  F
Sbjct: 1025 LEKVWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMSNIKQVTFF 1084

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASA-DKPFD 863
             ++ R+  + ++ P VN     F V     I + +AAIKGVG++    I+     +  F 
Sbjct: 1085 MEECRRMKLDVLGPDVNESFRKFSVNKEGAIRFGMAAIKGVGSSAVESIVAERKENGHFK 1144

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWV 915
            S+ D   R+D +  N++  E+L  AG  D F    R Q           L+ + +YA   
Sbjct: 1145 SIFDMAKRIDLRAANKKAFENLALAGGFDSFQDTHRAQYFLDEGDGITFLEKVIRYAAKY 1204

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            ++N+ +   ++F         +  +       +  +   E+ V+G Y SGHPLD Y   +
Sbjct: 1205 QENKNSSQVSLFGEASEVQIPEPVVPPCEEWGTMEKLRKERDVVGMYISGHPLDDYNIEM 1264

Query: 976  RKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            +          E +  +    + LA ++   +   T+        T  +    YE
Sbjct: 1265 KSFCNANLNYLEDLQQVLNAELSLACILTDIRHLTTKTNKGWAIFTAEDYHNTYE 1319


>gi|314918129|gb|EFS81960.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL050PA1]
          Length = 1190

 Score =  959 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/1079 (31%), Positives = 540/1079 (50%), Gaps = 63/1079 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDMQDNLKMT-----------------NQGKTPFPTVPSIVL 101
                    I+PIIG +  +                           +  +       + +
Sbjct: 60   YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                +EG   L  L S            R+    L    + G+I  TG  SG +      
Sbjct: 120  WAKDSEGLHDLFRLSSLASYEG-YYMKPRMDRE-LMGQYSGGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ +F  +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
                   +V   +  +P+F   E +     +E+ LR K   GL+ +            ++
Sbjct: 298  EMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------PKE 347

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
              +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+
Sbjct: 348  VLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAIN 407

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKA
Sbjct: 408  PLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKA 467

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPS 507
            A++D  R L  P++  D++ K +P D     V L  I D S         FR+    +P 
Sbjct: 468  AVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPD 527

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            V +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ G
Sbjct: 528  VAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMG 587

Query: 568  LIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ +
Sbjct: 588  LMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGT 647

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DP 680
             MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E ++ IHP +    D 
Sbjct: 648  AMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPVIPIHPELKEDLDE 707

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G
Sbjct: 708  ILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHG 767

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +
Sbjct: 768  YSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKD 827

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-AD 859
            K+  +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A   +
Sbjct: 828  KMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREEN 887

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P      F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+
Sbjct: 888  GPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQ 947

Query: 920  TNKHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
             N  +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L 
Sbjct: 948  ANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALE 1007

Query: 977  KMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1008 AESDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|293368783|ref|ZP_06615387.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD CMC
            3f]
 gi|292636088|gb|EFF54576.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD CMC
            3f]
          Length = 1268

 Score =  959 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1142 (31%), Positives = 572/1142 (50%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +PIIGC++ +       
Sbjct: 63   KGEVKDLKKRIAGIEAGTIECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L     GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDLKEGKPDQSGYHLIVLAKNETGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +         AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IICSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLELQRHKATVPRANHECYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A    + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKHLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE------ 307
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++        
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357

Query: 308  -------------------------------ENELRNKAVAG-LEVRLAQGAIAKGYH-- 333
                                            ++L    + G    +LA     + Y   
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
              ++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRLCKL+P+  P   ++L  AIA     + A  + DP +
Sbjct: 538  MATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASSDPLL 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R V+VD+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDISDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIM-EASADKP 861
            K   + +   IQ + P VN   + F V  +    + L A+KGVG    + IM E   + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGDIRFGLGAVKGVGEAAVQSIMEERRKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              + ++     ++F  E         + +     +   R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077

Query: 973  PILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      +    A + G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|196229518|ref|ZP_03128383.1| DNA polymerase III, alpha subunit [Chthoniobacter flavus Ellin428]
 gi|196226750|gb|EDY21255.1| DNA polymerase III, alpha subunit [Chthoniobacter flavus Ellin428]
          Length = 1219

 Score =  959 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1118 (34%), Positives = 576/1118 (51%), Gaps = 111/1118 (9%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             + SFVHL  H+ YS L+GA+ +   + K      PA+AITD  NLF A+EF Q   ++G
Sbjct: 2    SADSFVHLHCHTEYSTLDGAVRIKEAMKKAKEYGMPALAITDHGNLFGAIEFYQAGKSSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            + PIIGC++ +    +LK T    T   +   + LL    +GY+ L++LVS  +L D   
Sbjct: 62   VNPIIGCEVYVAPDSHLKKT--ATTQRESAFHLTLLAQNDQGYRNLVKLVSIAHL-DGMY 118

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               RI    L + G +GLI L+G   G I++A   ++   A++    ++ +   +  ++ 
Sbjct: 119  YKPRIDKELLAQYG-KGLIGLSGCLKGEINQAIIEDNLPKAKELTGAYRDILGPENFFIE 177

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L  H    + +    +  LA    L LVA N+  FL   D+ AHD L+ +   + ++ + 
Sbjct: 178  LHNHGIEAQLKCNKTLPVLAKEFGLGLVAANDVHFLQRTDHAAHDALICIGTGSNIADER 237

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R     + Y K+ +EM ++F+++PEA +NT+ IA RC+  +   +P  P +         
Sbjct: 238  RMHYVQEVYFKSPAEMRALFAEVPEACDNTLAIAERCNITIDT-SPKYPNYTPPPG---- 292

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + +   LR   +AG+  R    A      ++  ++R + E++V+ +  F+ YFLIV DFI
Sbjct: 293  RTQNEYLREITLAGMHRRYGSDA-----DSEIVQKRFELEISVLEKQGFTNYFLIVWDFI 347

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAK++ IPVGPGRGS AGS+ AYA+ ITDIDP++F LLFERFLNP+R+S PD D+DFC 
Sbjct: 348  NWAKEHGIPVGPGRGSAAGSMIAYAMGITDIDPIKFKLLFERFLNPERVSPPDIDVDFCV 407

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YV+ KYG   V+QIITFG+L AK+ LRDV R     Y   DR+ K+IPN+  
Sbjct: 408  NRRGEVIDYVRQKYGERAVSQIITFGTLGAKSVLRDVARVQGWSYGDADRVAKMIPNELG 467

Query: 485  HPVS---------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
              +                  AI  +   ++A   +P+  +L +++ KLEGL R    HA
Sbjct: 468  ITLKGLDKKNKETGQMDHIAGAIDKNPELKKAVDTEPATAQLWDVATKLEGLTRGVGVHA 527

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            AG+VIGDR LS  +P+ R    +  V+Q+ M  +   G++K DFLGLKTLT++  ++  +
Sbjct: 528  AGVVIGDRDLSDYIPLTRA-NDNSIVSQYAMGPLTDVGMLKCDFLGLKTLTVITDAVVLI 586

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
              R    D+  IP ++  T+ LL    T+GIFQLES GM           IEDI A+++L
Sbjct: 587  RHREPDFDVDKIPLENQPTFDLLNRGETIGIFQLESGGMVSVCRQFDIKDIEDINAILAL 646

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP+D I  Y  RK GK K+ + H L+  M KET GV++YQEQVMQ AQ+L+GY+L  
Sbjct: 647  YRPGPMDLIPDYIKRKKGKAKVKAPHKLLLDMTKETYGVLVYQEQVMQAAQILAGYTLGG 706

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD+LRRAMGKK KE+M K++ +F  G    + I +  A  IF+ L KFA YGFN+SH+AA
Sbjct: 707  ADLLRRAMGKKDKEKMAKERIKFCEGCKNLHNIEEKTANEIFDTLEKFAGYGFNRSHSAA 766

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA ISYQTA++K +YPVEF+AA M+ E+ N +KI  F  +  +  + I+PP VN   + F
Sbjct: 767  YAWISYQTAYLKANYPVEFMAAVMSNEVSNTDKISIFVGECERMGMTILPPDVNKSGLKF 826

Query: 829  K---VGDNRIYYSLAAIKGV---------GTTTARHIMEASADKPFDSL----------- 865
                V    I  + AA + +         G      I E   +  F+ L           
Sbjct: 827  TPEEVNVEGIAAAQAARRKLQVAAQATEQGEDAPESIEE--ENVRFEDLPSGPGTNGSAG 884

Query: 866  -----EDFCSRVDSKKLNRRVLESLVFA------------GALDCF-------------- 894
                  D    V S +     ++++  A            GA                  
Sbjct: 885  AETPASDEKIHVGSIRYGLAAIKNVGEAAVAAAIVERNNKGAFQSLEDFCGRVDVKKMNK 944

Query: 895  ---------------GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK----GTFS 935
                           G  R QL   +D     A    ++R     ++F   +     T +
Sbjct: 945  KALECLVKCGAFDWTGVERAQLHSEIDGALAAASSANRDRAVGQFSMFDDFEISGKATKT 1004

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
             K +  K +  +S+ +   E+ +LGFY +GHPLD Y+  L K       +       + +
Sbjct: 1005 TKGSAPKVAPWSSTEKLAYEKELLGFYVTGHPLDEYRSALEKF--VPIAKLSEEEDKSTV 1062

Query: 996  RLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
             +   + S ++K T+K       V   +     E   +
Sbjct: 1063 TIGGALASVEKKFTKKDNKPFAVVVLEDVTASLEVMIW 1100


>gi|317475168|ref|ZP_07934435.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA]
 gi|316908621|gb|EFV30308.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA]
          Length = 1274

 Score =  959 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1147 (31%), Positives = 574/1147 (50%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+          
Sbjct: 12   DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNGGP 71

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC   I        +PIIGC++ +       
Sbjct: 72   KGEIKDLKKRIAGIESGEIACEDKEAEIAACKEKIAEAENKLFKPIIGCEMYVA---RRT 128

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVSR + +       R   + L++   EGL
Sbjct: 129  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTMG-YYMRPRTDRNELEKYH-EGL 186

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G I +    +    AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 187  IVCSACIGGEIPKKIINDQLDEAEEAVRWYKNLFGDDFYLELQRHKATVPRANHEAYPLQ 246

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   +++++ A  + + ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 247  QKANAKLLEYAKKYGIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 306

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++E       
Sbjct: 307  MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRKRYTE 366

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L   A  G   RL   
Sbjct: 367  KDLFDEFTQDENGNVVLDEDAAKAKIKRLGGYDKLYRIKLEADYLAKLAFDGA-KRLYGD 425

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
             +     + + ++RL FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS 
Sbjct: 426  PL-----SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSA 480

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V  KYG E+VA 
Sbjct: 481  VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAH 540

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRL KL+P+  P   ++L  AIA     + A  
Sbjct: 541  IITYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEA 600

Query: 504  A-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558
            + DP V   L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+
Sbjct: 601  SPDPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 660

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL++++++++ +   RGVK+D+  I   D  TY L     T
Sbjct: 661  EGSVIEDTGLIKMDFLGLKTLSIIKEAVENVRLHRGVKLDIDKISIKDPATYKLYCDGRT 720

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+
Sbjct: 721  IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPI 780

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI+G  
Sbjct: 781  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQ 840

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + 
Sbjct: 841  KNGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLS 900

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEA 856
            ++  I K   + +   I+++ P VN   + F V       + L A+KGVG      IME 
Sbjct: 901  DITTITKLMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVHSIMEE 960

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907
               + P+  + DF  RV+    N++ LE L  AG  D F    R Q           ++ 
Sbjct: 961  REKNGPYTGIFDFVQRVNLNSCNKKNLECLALAGGFDSFPELKREQYFAVNAKNEVFIET 1020

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         +      +   R   E+ ++G Y S HP
Sbjct: 1021 LVRYGNRYQADKAAAVNSLFGGENVVDIATPEILPAERWSDLDRLNRERDLVGIYLSAHP 1080

Query: 968  LDVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  +L  +      E    A + G  I +  +V S ++  ++ G+  G     + + 
Sbjct: 1081 LDEYSVVLEHVCNTHMAELEDKAALVGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSG 1140

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1141 SAELPFF 1147


>gi|260174216|ref|ZP_05760628.1| DNA polymerase III alpha subunit [Bacteroides sp. D2]
 gi|315922485|ref|ZP_07918725.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696360|gb|EFS33195.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1268

 Score =  959 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1142 (31%), Positives = 572/1142 (50%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +PIIGC++ +       
Sbjct: 63   KGEVKDLKKRIAGIEAGTIECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L     GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDLKEGKPDQSGYHLIVLAKNETGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +         AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IICSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLELQRHKATVPRANHECYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A    + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKHLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE------ 307
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++        
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357

Query: 308  -------------------------------ENELRNKAVAG-LEVRLAQGAIAKGYH-- 333
                                            ++L    + G    +LA     + Y   
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
              ++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRLCKL+P+  P   ++L  AIA     + A  + DP +
Sbjct: 538  MATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASSDPLL 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R ++VD+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRNIEVDVDAIDISDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIM-EASADKP 861
            K   + +   IQ + P VN   + F V  +    + L A+KGVG    + IM E   + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGDIRFGLGAVKGVGEAAVQSIMEERRQNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              + ++     ++F  E         + +     +   R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077

Query: 973  PILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      +    A + G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|295706863|ref|YP_003599938.1| DNA polymerase III subunit alpha [Bacillus megaterium DSM 319]
 gi|294804522|gb|ADF41588.1| DNA polymerase III, alpha subunit [Bacillus megaterium DSM 319]
          Length = 1116

 Score =  959 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1009 (36%), Positives = 585/1009 (57%), Gaps = 37/1009 (3%)

Query: 27   LSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMT 86
            + ++ +++        AIA+TD N ++  + F +    AGI+PII           L ++
Sbjct: 19   VRIHELVETAKKMNYEAIALTDENVMYGVIPFYKACVKAGIKPII----------GLTLS 68

Query: 87   NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146
                        +VLL    +GY+ L++L S +    Q K+   +   WL    + GLI 
Sbjct: 69   ILEHEESERAYPLVLLAENDKGYENLLKLSSLV----QTKEKHGVNKKWLHHY-SGGLIA 123

Query: 147  LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYT 206
            +T G +G ++     N  Q A++ L  FKK++   LY+++QRH   + +   Q+ +LA  
Sbjct: 124  ITPGVTGEVETLLAENKFQDAKRVLQFFKKVYSQSLYISIQRHGQDETFINQQLTELAAE 183

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
              +PLVATN   +L +ED +A++ L+A+     + S ++    + ++Y K+  EM  +F 
Sbjct: 184  ENIPLVATNQVKYLKKEDRDAYECLVAIRDGEKLHSDEEVKSKSSEYYFKSPDEMEDLFH 243

Query: 266  DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
            D    +E +++IARRC   + +    +P++               LR     GL+ R+  
Sbjct: 244  DQHFLIEESIKIARRCELEISLGVMSIPKYPVPP----SVTSSTYLRTLCEKGLQERV-- 297

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                     + Y +RLD+ELN+I  M+FS YFLIV DF+ +A ++ I  GPGRGS AGS+
Sbjct: 298  -----QVITEQYEERLDYELNIIENMRFSDYFLIVWDFMNYAHEHGILTGPGRGSAAGSL 352

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             +YAL IT++DP++  LLFERFLNP+R+SMPD DIDF  ++RD+VI+YV  KYG   VAQ
Sbjct: 353  VSYALRITNVDPIQHQLLFERFLNPERISMPDIDIDFPDNKRDQVIQYVAQKYGGLHVAQ 412

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
            IITFG+L AKAA+RDVGR +      ++++ K IP  P   +   A+ D    ++    +
Sbjct: 413  IITFGTLAAKAAVRDVGRVMGFDQEALNKMSKAIPTKPGTTLK-SALRDSRVLQDYLSEN 471

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
             +  +   I+ K+EGL RH STHAAG+VI ++PL+Q V +  +   D+ +TQ+ M+ ++ 
Sbjct: 472  EARKQWYNIAMKIEGLPRHTSTHAAGVVISEKPLTQSVAVQ-EGHDDVYLTQYPMEALQD 530

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GL+K DFLGL+ LT+L   L  + +   +   LS IPF+D +T+ LL+   T GIFQLE
Sbjct: 531  VGLLKMDFLGLRNLTILDHILKKIERDMNRKLSLSHIPFNDQKTFELLSKGDTTGIFQLE 590

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S GMR+ L+ ++P  +EDI+A+ +LYRPGP++NI  Y  RK+G EK++  HP +  +L+ 
Sbjct: 591  SDGMRRVLQQLKPTELEDIVAVNALYRPGPMENIPTYIKRKHGVEKVIYDHPTLKDILQS 650

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T GVI+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +  +D+++  FI G+ K G   +
Sbjct: 651  THGVIVYQEQIMQIASKMAGFSLGEADLLRRAVSKKERAVLDRERAHFIQGSKKKGYDLS 710

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +A  +++L+ +FADYGFN+SHA AY++++YQ A++K HYP++F +A +T  + N  KI +
Sbjct: 711  VANRVYDLIVRFADYGFNRSHAVAYSMVAYQLAYLKAHYPLQFFSALLTSVIGNEGKIAQ 770

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            +  + ++  IQ++PPS+N     F V    I YSLAAIK +G    + I E    K F+ 
Sbjct: 771  YINELKRNKIQVLPPSINKSMYSFNVEGESIRYSLAAIKHIGAAAMQEITEERKKKRFED 830

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            L DFC+RV  K +N++ LE+L+ +G  D FG +R  LL ++D   ++A  V  +      
Sbjct: 831  LFDFCARVSQKAVNKKGLEALILSGGFDEFGENRATLLATIDVAFEHASLVLPDDDFG-- 888

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
              F  E       +  E+  +E+   R + E+ +LGFY S HP   Y+ +     +    
Sbjct: 889  --FGDEFSLKPKYMEKEELKIED---RLQYEKDMLGFYLSSHPASQYEALNSFYSVVSLH 943

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +      G  + L   V+  +  +T+KG ++ ++  ++ + E E   FP
Sbjct: 944  DMKEYASGKAVSLLVFVLEIRVIRTKKGEQMAFLRITDESGEGEVVAFP 992


>gi|29347640|ref|NP_811143.1| DNA polymerase III subunit alpha [Bacteroides thetaiotaomicron
            VPI-5482]
 gi|29339541|gb|AAO77337.1| DNA polymerase III alpha subunit [Bacteroides thetaiotaomicron
            VPI-5482]
          Length = 1267

 Score =  959 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1142 (31%), Positives = 575/1142 (50%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +PIIGC++ +       
Sbjct: 63   KGEIKDLKKRIAGIEAGTVECEDKEAEVAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDLKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ----- 199
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+        +     
Sbjct: 178  IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237

Query: 200  ------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  + + A  + + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKYLQEYARKYNIKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE-------------- 299
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E              
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKYTE 357

Query: 300  ------------CDDIQKEEENELRNKAVAGLEV------------RLAQGAIAKGYH-- 333
                         + +  EEE + + K + G E             +LA     + Y   
Sbjct: 358  KDLFDEFTQDENGNVVLSEEEGQAKIKRLGGYEKLYRIKLEGDYLAKLAFDGAKRIYGDP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
             +++ ++RL+FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS  AY L 
Sbjct: 418  LSEEVKERLNFELYIMKTMGFPGYFLIVQDFINAARSELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+  P   ++L  AI      + A  + DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R +++D+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRSLEIDVDQIDITDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEASA-DKP 861
            K   + +   IQ + P VN   + F V  +    + L A+KGVG    + I+E    + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVQSIVEERNTNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              ++++     ++F            + +         R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQEDKRAAINSLFGGANVVDIATPEIPQGVERWGDLERLNKERDLVGIYLSAHPLDEFA 1077

Query: 973  PILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      +    A + G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLDHVCNTRMADLEDKAALAGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|313764330|gb|EFS35694.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL013PA1]
 gi|313815868|gb|EFS53582.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL059PA1]
 gi|314915320|gb|EFS79151.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL005PA4]
 gi|314920206|gb|EFS84037.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL050PA3]
 gi|314931729|gb|EFS95560.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL067PA1]
 gi|314955630|gb|EFT00032.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL027PA1]
 gi|314958026|gb|EFT02129.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL002PA1]
 gi|315098658|gb|EFT70634.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL059PA2]
 gi|315101339|gb|EFT73315.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL046PA1]
 gi|327450658|gb|EGE97312.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL087PA3]
 gi|327454004|gb|EGF00659.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL083PA2]
 gi|328753262|gb|EGF66878.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL025PA2]
 gi|328754076|gb|EGF67692.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL087PA1]
          Length = 1190

 Score =  959 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/1079 (31%), Positives = 540/1079 (50%), Gaps = 63/1079 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDMQDNLKMT-----------------NQGKTPFPTVPSIVL 101
                    I+PIIG +  +                           +  +       + +
Sbjct: 60   YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                +EG   L  L S            R+    L    + G+I  TG  SG +      
Sbjct: 120  WAKDSEGLHDLFRLSSLASYEG-YYMKPRMDRE-LMGQYSGGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ +F  +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
                   +V   +  +P+F   E +     +E+ LR K   GL+ +            ++
Sbjct: 298  EMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------PKE 347

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
              +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+
Sbjct: 348  VLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAIN 407

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            PL   LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKA
Sbjct: 408  PLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKA 467

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPS 507
            A++D  R L  P++  D++ K +P D     V L  I D S         FR+    +P 
Sbjct: 468  AVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPD 527

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            V +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ G
Sbjct: 528  VAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMG 587

Query: 568  LIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ +
Sbjct: 588  LMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGT 647

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DP 680
             MR  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E ++ IHP +    D 
Sbjct: 648  AMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPVIPIHPELKEDLDE 707

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +L  T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G
Sbjct: 708  ILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHG 767

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             S      +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +
Sbjct: 768  YSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKD 827

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-AD 859
            K+  +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A   +
Sbjct: 828  KMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREEN 887

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P      F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+
Sbjct: 888  GPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQ 947

Query: 920  TNKHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
             N  +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L 
Sbjct: 948  ANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALE 1007

Query: 977  KMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1008 AESDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|328947381|ref|YP_004364718.1| DNA polymerase III subunit alpha [Treponema succinifaciens DSM 2489]
 gi|328447705|gb|AEB13421.1| DNA polymerase III, alpha subunit [Treponema succinifaciens DSM 2489]
          Length = 1213

 Score =  959 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1082 (33%), Positives = 566/1082 (52%), Gaps = 67/1082 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL VHS YS+L+GA  ++ ++ +      PA+A+TD  N+F +L F +     GI P
Sbjct: 18   NFVHLHVHSDYSILDGASKIDTLVARAKELNMPALALTDHGNMFGSLNFEKLCHVNGINP 77

Query: 70   IIGCQLDIDMQDNLKMTN---QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+G +  +    + +  +              ++LL     GY+ +  L S  Y      
Sbjct: 78   IVGEEFYVAWGSHTEHNDVPFGRNGKNSHYFHLILLCENQTGYKNMSWLSSIAYTEGLYY 137

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               RI    L++   EGLI L+    G + +       + A +    +K+LF  DR Y+ 
Sbjct: 138  GKPRIDFELLKKYH-EGLICLSACIQGELPQLLLNGREEDAYRVAKEYKELFGPDRYYIE 196

Query: 186  LQRHRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H   ++   +  +++L+   ++PLV TN+  + +++D EA D L  +    ++ +  
Sbjct: 197  IQDHGLDEQKEVAVNLIKLSKDLDIPLVLTNDVHYCNKDDAEAQDALRCIGFKKLLDEPH 256

Query: 245  RPRVTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-----QVHAPILPRFIE 297
            +       + YLK   EM  +F + PEA+ NT++IA  C+  +           LPRF  
Sbjct: 257  QTMGGGRKEWYLKTEQEMSILFPNYPEAMANTIKIANMCNLTIHQYTTPELKGCLPRFSL 316

Query: 298  K----ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
                 + +D  + +++ +R     GL VR  +         Q  R+R ++EL +I +M F
Sbjct: 317  PIEFQKHEDYTENQDDYVRCLVEKGLRVRYPE-------ITQAIRRRCEYELGIIFKMGF 369

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
            SGYFLIV +FI WAK++ IP+GPGRGSGAGS+ AY +TITDIDP RF L+FERFLNP+R+
Sbjct: 370  SGYFLIVWEFINWAKEHGIPIGPGRGSGAGSLVAYCMTITDIDPFRFKLIFERFLNPERV 429

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPDFDID   D R  +I++ +  YG  +V  I+TFG+L+ K  L DVGR L +P S V 
Sbjct: 430  SMPDFDIDMDFDFRQNIIQHTRETYGEPQVGHIVTFGTLKPKNCLADVGRILNIPLSIVT 489

Query: 474  RLCKLIPNDPAHPVS---------------LQAIADDSRFREARLADPSVDRLLEISQKL 518
            ++   IP++P   +                L  I+++       L   + DR + + +KL
Sbjct: 490  KVKACIPDNPKAKLKNALEPPTDKFPDGGQLIPISENPETT-IGLDKKTFDRWIALCKKL 548

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R+   HA+G+VIG   L    P+++D ++     Q+ M  IE  GL+KFD+LGLKT
Sbjct: 549  EGLIRNTGLHASGMVIGLTALPDWAPVFKDPKTGEVAVQYTMDIIEPCGLVKFDYLGLKT 608

Query: 579  LTLLQKSLDFLAQRGVKVDLS----LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L+L++ + + + +     +       +   D ET+ L     ++ IFQ ES GM++ L  
Sbjct: 609  LSLIRYAENIINKHKKPDEPEFKTENVSETDSETFDLFCRGDSVAIFQFESPGMQKILRQ 668

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
             QP C+E+++AL +LYRPGP+D I  Y   K   E +    P ++ +LKET GV++YQEQ
Sbjct: 669  CQPRCVEELVALNALYRPGPLDYIPQYIEGKWKPETVHYPDPCLEGILKETYGVMVYQEQ 728

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VMQ+AQ ++G+SL  AD+LRRAMGKK  E +  +K  F  GA K G +K  A  IF+++ 
Sbjct: 729  VMQVAQKIAGFSLGGADMLRRAMGKKKLEVLMGKKVEFEEGAIKQGYTKEHADEIFDIMV 788

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA YGFNKSHAAAY V++Y+T W+KTH   EF+AA++T E+ + + + ++ ++AR+  I
Sbjct: 789  PFAGYGFNKSHAAAYTVLAYRTGWLKTHKKAEFMAANLTNEITSTDTLPEYIEEARKMGI 848

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
             + PP VN     F V D  I + L  IKG+G   AR I+E    + P+ S  DF  R+ 
Sbjct: 849  PVDPPDVNRSDSIFDVIDGHIVFGLKGIKGMGEGAARAIVEEREKNGPYKSFVDFIERLS 908

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            SK +N++ +E L+  GA D  G +R  L  + + + +Y      ++     ++F      
Sbjct: 909  SKDVNKKAIEVLIKTGAFDNLGQNRATLTMNFERVIEYEDKKNASKEYGQASLFEDAGIK 968

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-- 991
              +    E+        R   E+ ++G + SGHPLD YK  +        E      +  
Sbjct: 969  EFEDFKFEECEDLPKMERLNMEKELIGCFVSGHPLDDYKTAIETCATCNSENIERWAKID 1028

Query: 992  --------------------GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                                G       M+   +   T+KG ++ +   ++     +  F
Sbjct: 1029 KAEKASLESSGRSSWQSRNSGKTYIAIGMLQDLKIIMTKKGKQMAFAKLADYKGFIDVTF 1088

Query: 1032 FP 1033
            FP
Sbjct: 1089 FP 1090


>gi|237718270|ref|ZP_04548751.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_2_4]
 gi|299147818|ref|ZP_07040881.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23]
 gi|229452454|gb|EEO58245.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_2_4]
 gi|298514001|gb|EFI37887.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23]
          Length = 1268

 Score =  959 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1142 (31%), Positives = 572/1142 (50%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +PIIGC++ +       
Sbjct: 63   KGEVKDLKKRIAGIEAGTIECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L     GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDLKEGKPDQSGYHLIVLAKNETGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +         AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IICSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLELQRHKATVPRANHECYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A    + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKHLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE------ 307
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++        
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYREKFTE 357

Query: 308  -------------------------------ENELRNKAVAG-LEVRLAQGAIAKGYH-- 333
                                            ++L    + G    +LA     + Y   
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
              ++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRLCKL+P+  P   ++L  AIA     + A  + DP +
Sbjct: 538  MATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASSDPLL 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R V+VD+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDISDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIM-EASADKP 861
            K   + +   IQ + P VN   + F V  +    + L A+KGVG    + IM E   + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGDIRFGLGAVKGVGEAAVQSIMEERRKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              + ++     ++F  E         + +     +   R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077

Query: 973  PILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      +    A + G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|150024446|ref|YP_001295272.1| DNA polymerase III, alpha and epsilon subunits [Flavobacterium
            psychrophilum JIP02/86]
 gi|149770987|emb|CAL42454.1| Probable DNA polymerase III, alpha and epsilon subunits
            [Flavobacterium psychrophilum JIP02/86]
          Length = 1508

 Score =  959 bits (2479), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1095 (32%), Positives = 562/1095 (51%), Gaps = 84/1095 (7%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS- 59
            +TQ L  +  F HL  H+ +S+L+  +S+  ++   A ++  A+A+TD  NL  A  F  
Sbjct: 252  ITQNLANAK-FAHLHNHTQFSVLQSTISVAKLVAAAAKNKMSAVAMTDHANLMGAFHFVR 310

Query: 60   --------------------QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
                                ++A    ++PI+GC+  +         ++ K+       +
Sbjct: 311  DVLNQNKTAAKKNATAIENGEEATEVEMKPIVGCEFFVCDN------HKDKSKKDNGYQV 364

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            V L    +GY  L ++ S  Y         RI  + +++   E +I+L+G   G I    
Sbjct: 365  VFLAKNKKGYHNLAKMSSIAYTEG-FYYVPRIDRNVIEQY-KEDIIVLSGNLYGEIPSKI 422

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSL 218
                   AE+ LL +K  F D  Y+ L RH   D  R +Q ++  A  HE+ L+ATNN+ 
Sbjct: 423  LNLGENQAEEALLWWKSKFKDDFYLELMRHNQEDENRVNQTLISFANKHEVKLIATNNTF 482

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            ++S++D  AHD+L+ V      +                ++Y K+  EM  +FSDLP+A+
Sbjct: 483  YISKDDANAHDILLCVKEGEKQATPIGRGRGYRFGLPNQEYYFKSGEEMKQLFSDLPDAI 542

Query: 272  ENTVEIARRCSFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVRL 323
             N  EI  +          +LP+F         E + D   + E   L +    G + R 
Sbjct: 543  VNIQEIVDKIEIYSLYRDVLLPKFEIPTEFLVPEDQTDGGVRGENKYLHHLTYQGAKRRY 602

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
            A+          +  +R+DFEL  I    + GYFLIV DFI  A+K ++ VGPGRGS AG
Sbjct: 603  AE-------ITPEIEERIDFELLTIQNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAAG 655

Query: 384  SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            SV AY L IT+IDPL ++LLFERFLNPDR+S+PD DIDF  + R +V+ YV  KYG ++V
Sbjct: 656  SVVAYCLGITNIDPLLYNLLFERFLNPDRVSLPDIDIDFDDEGRSKVMDYVIEKYGKKQV 715

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS------- 496
            AQIIT+G++ AK+A+RD  R L +P  + D++ KL+P       +L    +D+       
Sbjct: 716  AQIITYGTMAAKSAIRDTARVLDLPLFEADKIAKLLPGMLPGKWNLARFMNDTEVEIKKV 775

Query: 497  -------RFREARL---ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                   R +E  L    +      ++ +Q LEG  R+   HA G++I    ++  VP+ 
Sbjct: 776  LRPEDFDRMKELILLSKEEDLGGETIQQAQILEGNLRNTGIHACGVIITPSDITNFVPVT 835

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                SDL VTQF+    E AGL+K DFLGLKTLTL++ ++  +  R  +++D    P DD
Sbjct: 836  TAKDSDLYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIQLDPDTFPIDD 895

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +TY L     T+GIFQ ES+GM++ ++ ++P    D+IA+ +LYRPGPI  I  +  RK
Sbjct: 896  VKTYELFQRGETVGIFQYESAGMQKYMKELKPTVFNDLIAMNALYRPGPIAYIPSFIKRK 955

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E I       + +LK+T G+ +YQEQVM ++Q L+ +S  +ADVLR+AMGKK ++ +
Sbjct: 956  NGEEPIEYDLEACEELLKDTYGITVYQEQVMLLSQRLADFSKGDADVLRKAMGKKQRDVL 1015

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            DK K +F+S A   G ++     I++    FA+Y FNKSH+  YA I+YQTA++K +YP 
Sbjct: 1016 DKMKPKFVSQAVAKGHAEDKLEKIWKDWEAFAEYAFNKSHSTCYAWIAYQTAYLKANYPA 1075

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKG 844
            E++AA ++  M +++++  F ++ ++  + ++ P VN     F V D+  + + + A+KG
Sbjct: 1076 EYMAAVLSNNMSDIKQVSFFMEECKRMGLAVLGPDVNESFYKFTVNDDYAVRFGIGAVKG 1135

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQ 903
            VG      I+E   D  + S+ D   RVD +  N++ +E+L+ AG  DCF    R Q   
Sbjct: 1136 VGMGAVNTIVENRKDGSYKSIFDLAKRVDQRAANKKAIENLILAGGFDCFENTHRAQYFH 1195

Query: 904  S-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +        +   ++    ++N  +   ++F         +  +      N+  +   E+
Sbjct: 1196 TDGDNLTFYEKAIRFGAKFQENENSSQVSLFGDTSDVQISEPLIPPCEEWNTMEKLAKEK 1255

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSR 1014
             V+G Y SGHPLD YK  ++       E      +  G N+    +V + Q +  + G  
Sbjct: 1256 EVVGIYISGHPLDDYKFEMKYFCNNKLESLKNLEQFVGKNLAFGGIVTNVQHRTAKNGKG 1315

Query: 1015 IGWVTFS--EPAKEY 1027
                     +   E+
Sbjct: 1316 WATFVLEGYDENNEF 1330


>gi|118602780|ref|YP_903995.1| DNA polymerase III, alpha subunit [Candidatus Ruthia magnifica str.
            Cm (Calyptogena magnifica)]
 gi|118567719|gb|ABL02524.1| DNA polymerase III, alpha subunit [Candidatus Ruthia magnifica str.
            Cm (Calyptogena magnifica)]
          Length = 1144

 Score =  959 bits (2479), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1044 (37%), Positives = 612/1044 (58%), Gaps = 41/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S +FVHL   S +S+    + +  +++K+      +IA+TD +NLF+A++F QKA  
Sbjct: 1    MTNS-NFVHLHCQSEFSVENSLIRIPKLIEKVQEIGMNSIALTDESNLFTAVKFYQKATI 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            A I+PI G +++I            K       S++LL    +GY  L EL+S  Y   +
Sbjct: 60   ANIKPIFGARINI------------KDKEGEFYSVLLLCQDYQGYLNLSELISLSYTQGR 107

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              + V +    L +   +GLIM+       + +    N    A+++   ++ +  +R Y+
Sbjct: 108  SFECVSVTQQQLID-HNQGLIMIATPIYSDVAKYLISNQMIEAKQKAEFWQTILVERYYL 166

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            ++QR  R +D       V+LA   ++ +VATN+  FL+E D++AH+  + ++   ++   
Sbjct: 167  SVQRTSREFDEEHLHLCVKLALELDIAVVATNDVQFLNESDFDAHEARICISQGGLLDDV 226

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ-VHAPILPRFIEKECD 301
             R    +   +LK+  +M  +FSDLPE LENT+EIA+RC+   +      LP F   +  
Sbjct: 227  RREKHFSNQQFLKSSEQMHELFSDLPEILENTLEIAKRCNVHFKLFKKNYLPDFPVPKDL 286

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             I    E     ++  GL  RL             Y QRL FELNVI +M F GYFLIVA
Sbjct: 287  TI----ERFFCEESEHGLVQRLQNL----KVDTLVYYQRLKFELNVIIQMGFPGYFLIVA 338

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+W+K+N+IPVGPGRGSGAGS+ AY L IT++DP+R  LLFERFLNP+R+SMPDFDID
Sbjct: 339  DFIRWSKENDIPVGPGRGSGAGSLVAYVLGITNVDPIRHELLFERFLNPERVSMPDFDID 398

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI YV  KYG+++V+QIIT+G++ AK  +RDVGR L  PY   D++ K+IPN
Sbjct: 399  FCTDRRDEVIDYVAKKYGYKKVSQIITYGTMAAKGVVRDVGRILGHPYGFSDKISKMIPN 458

Query: 482  DPAHPVSLQAIAD-----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            D    +  +A++          R    ++ SV  L+++S++LEGL R+  THA G+VI  
Sbjct: 459  DLKMTLE-KALSKPEEGGSEELRARYDSEESVTALIDLSKQLEGLVRNVGTHAGGVVIAP 517

Query: 537  RPLSQLVPMYRD-VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--- 592
              +S   P+Y+    +D  V+QF+   IE  GL+KFDFLGL  LT++ K++  ++ +   
Sbjct: 518  SKISDFCPVYKGYGENDGVVSQFDKDDIEAIGLVKFDFLGLSNLTVIHKTVKLISAKGLS 577

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +DL  +P DD + Y LL    T GIFQLES GMR  L+ +Q D  EDI+A+++LYRP
Sbjct: 578  NEPIDLDALPLDDKKVYELLQRCDTTGIFQLESEGMRSYLKKLQADNFEDIVAMLALYRP 637

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+D  +V  Y N K+G  ++   HP+++ +LK T GV +YQEQVM+ AQ+++GYSL  A
Sbjct: 638  GPLDAGMVDDYINVKHG-AQVKYPHPMLEQILKPTNGVFLYQEQVMKSAQVMAGYSLGGA 696

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK   EM +Q+  F+ GA++ GI +  A  IF+L+ KF+ YGFNKSH+ AYA
Sbjct: 697  DLLRRAMGKKKDSEMSRQRSVFVKGAAEKGIDEKKANEIFDLIDKFSGYGFNKSHSVAYA 756

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             +SY TAW+K+H+P  F+AA ++  MDN ++I     + R+  + +  P+V     +F +
Sbjct: 757  YVSYHTAWLKSHHPAPFMAAVLSGMMDNTDRISFTISEVRKMGLVVNGPNVCESNYEFSI 816

Query: 831  GDNRIY-YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D +   Y L AIKGVG      ++ E + +  + SL +FCSR++ + LN+R +E+L+++
Sbjct: 817  NDEKTVAYGLGAIKGVGGALVDALVFERNTNGVYKSLFEFCSRIEKRYLNKRAIEALIYS 876

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D  G  R  L+++     + A+  + +  +  + +F++ +     ++     S  + 
Sbjct: 877  GAFDVLGVDRASLIKTYPIAIRQAEQKQNDYFSGQKGLFSNIEQHNEYEMNYLSASSFSF 936

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+ VLG+YF+ HP D YK  L+ +G       +      ++R+ A++   + + 
Sbjct: 937  KERLQLEKSVLGYYFNDHPTDEYKTDLKHIGAI-LPSKIVFRNNKDMRILALISELRYRA 995

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T+ G +I  +T  + AK   A  F
Sbjct: 996  TKSGGQIALITVEDGAKLLNAVIF 1019


>gi|298383490|ref|ZP_06993051.1| DNA polymerase III, alpha subunit [Bacteroides sp. 1_1_14]
 gi|298263094|gb|EFI05957.1| DNA polymerase III, alpha subunit [Bacteroides sp. 1_1_14]
          Length = 1267

 Score =  959 bits (2479), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1142 (31%), Positives = 575/1142 (50%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +PIIGC++ +       
Sbjct: 63   KGEIKDLKKRIAGIEAGTVECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDLKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ----- 199
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+        +     
Sbjct: 178  IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237

Query: 200  ------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  + + A  + + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKYLQEYARKYNIKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE-------------- 299
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E              
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKYTE 357

Query: 300  ------------CDDIQKEEENELRNKAVAGLEV------------RLAQGAIAKGYH-- 333
                         + +  EEE + + K + G E             +LA     + Y   
Sbjct: 358  KDLFDEFTQDENGNVVLSEEEGQAKIKRLGGYEKLYRIKLEGDYLAKLAFDGAKRIYGDP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
             +++ ++RL+FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS  AY L 
Sbjct: 418  LSEEVKERLNFELYIMKTMGFPGYFLIVQDFINAARSELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+  P   ++L  AI      + A  + DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R +++D+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRSLEIDVDQIDITDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEASA-DKP 861
            K   + +   IQ + P VN   + F V  +    + L A+KGVG    + I+E    + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVQSIVEERNTNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              ++++     ++F            + +         R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQEDKRAAINSLFGGANVVDIATPEIPQGVERWGDLERLNKERDLVGIYLSAHPLDEFA 1077

Query: 973  PILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      +    A + G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLDHVCNTRMADLEDKAALAGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|149278873|ref|ZP_01885008.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39]
 gi|149230492|gb|EDM35876.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39]
          Length = 1477

 Score =  959 bits (2478), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1109 (32%), Positives = 574/1109 (51%), Gaps = 95/1109 (8%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS--- 59
            Q LE++  F HL  H+ +S+L+  +++  ++   AA + PA+A+TD  N+  A  F    
Sbjct: 254  QELERAV-FAHLHNHTQFSVLQSTINIPALIKATAAAKMPAVAMTDRANMMGAFHFVAQV 312

Query: 60   -----------QKACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
                       Q A   G       I+PI+GC+        +   ++ K        +V 
Sbjct: 313  INHNKGVDARNQAAIEKGEVPEEVPIKPIVGCEFF------VCENHEDKKRKDDGYQVVF 366

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
            L     GY  L ++ S  Y         RI  + +++   + +I+L+G   G I      
Sbjct: 367  LAKNKAGYHNLAKMSSIAYTKG-FYYVPRIDKAVVEQY-KDDIIVLSGNLYGEISSKLLN 424

Query: 162  NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFL 220
               + AE+ LL +K  FG+  YV L RH   D       ++ LA  HE+ L+ATNNS ++
Sbjct: 425  LGEKQAEEALLWWKSQFGEDFYVELMRHSQEDEDIVNVSLMALAKKHEVKLIATNNSYYI 484

Query: 221  SEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALEN 273
            +++D  AHD+L+ V      +                ++Y K+  EM ++F+D+PEA+ N
Sbjct: 485  NKKDANAHDILLCVKDGEKQATPIGRGRGFRYGLPNQEYYFKSPEEMKNLFADVPEAILN 544

Query: 274  TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQ 325
              E+  +          +LP+F   E   + ++EE+         LR+    G + R   
Sbjct: 545  IKEVIDKIESYKLAREVLLPKFDIPEEFLVAEDEEDGGKRGENKFLRHLTYVGAKKRY-- 602

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                 G    D  +RLDFEL  I +  + GYFLIV DFI  A+  ++ VGPGRGS AGS 
Sbjct: 603  -----GEITDDIAERLDFELQTIEKTGYPGYFLIVQDFIAEARNLDVSVGPGRGSAAGSA 657

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV  KYG  +VAQ
Sbjct: 658  VAYCLGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVIKKYGANQVAQ 717

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV------SLQ------AIA 493
            IIT+G++ AK++++D  R L +P  + +++ KLIPN     +      +L+         
Sbjct: 718  IITYGTMAAKSSVKDTARVLDLPLFEAEKIAKLIPNMKLAKIFNLDEKTLKGALRPDEYE 777

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                 +     +    + LE +Q LEG  R+   HA G++I    ++  VP+     SDL
Sbjct: 778  KVVELKMLATNNDLGAKTLEQAQILEGSLRNTGIHACGVIITPSDITNFVPVSTAKDSDL 837

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLL 612
             VTQF+   +E AGL+K DFLGLKTLTL++ ++  +  R  + +D    P DD +TY L 
Sbjct: 838  YVTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKLVKFRHNIDLDPDNFPIDDAKTYELF 897

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
                T+GIFQ ES+GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RKNG+E+I 
Sbjct: 898  QRGETIGIFQYESTGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEEIK 957

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
                  +  LKET G+ +YQEQVM ++Q L+G++  EADVLR+AMGKK K+ +DK K +F
Sbjct: 958  YDLDACEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQKDVLDKMKPKF 1017

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I+ A++ G   +I   I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA +
Sbjct: 1018 IAQAAEKGHQASILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVL 1077

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTAR 851
            +  M +++++  F ++ +Q  + ++ P VN   + F V    ++ + L+ IKGVG     
Sbjct: 1078 SNNMSDIKQVAFFMEECKQMGVSVLGPDVNESDIKFSVNISGQVRFGLSGIKGVGDKAVE 1137

Query: 852  H-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL--------L 902
              I+E +    + S+ DF  R +++ +N++  ES V++GA DCF Y R Q         +
Sbjct: 1138 SIIIERNESGLYKSVYDFAKRSNTRTVNKKAYESFVYSGAFDCFSYHRAQYFFVGINDKM 1197

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKITLEKFSVENSSVRFENEQRVLGF 961
              ++ + K+A   + N  +   ++F          + +L      +   R + E+  +G 
Sbjct: 1198 NGIEKMIKFANDFQNNEASSQSSLFGAAAADMMISEPSLPVAPEWSLIDRLKYEKDAIGI 1257

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESV------------------ATIRGNNIRLAAMVVS 1003
            + SGHPLD YK  L++      +                      TI+   + +  +VV 
Sbjct: 1258 FLSGHPLDNYKLELKEFCQHKVKHLSLVNKIRTGDSNEEVLAEFETIKNRELVVGGLVVL 1317

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              Q+ T+ G   G +TF +     E   F
Sbjct: 1318 ATQRITKTGKPFGIITFEDYDDTCELALF 1346


>gi|294674564|ref|YP_003575180.1| DNA polymerase III subunit alpha [Prevotella ruminicola 23]
 gi|294473595|gb|ADE82984.1| DNA polymerase III, alpha subunit [Prevotella ruminicola 23]
          Length = 1243

 Score =  959 bits (2478), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1120 (32%), Positives = 554/1120 (49%), Gaps = 111/1120 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62
             FVHL VH+ YS+L+G  S+  ++DK   D    +AITD  ++F   EF           
Sbjct: 3    DFVHLHVHTYYSILDGQSSIKKLVDKAIGDGMKGMAITDHGDMFGIKEFHDICNGVNKQR 62

Query: 63   CAAGI---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
               G+   +PI GC++ +  + ++ +  +GK        +++L     GY+ LI+LVS  
Sbjct: 63   KKDGLEPFKPIFGCEMYVARRGDMML-KEGKEDLGGY-HLIVLAKNEHGYKNLIKLVSNS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++ D      R     L++   E LI+ +   +G +         + A K +   K L+G
Sbjct: 121  WV-DGFYNRPRTDHKQLEKYH-EDLIVCSACIAGEVPAKILKGDIEGARKAIEWHKNLWG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     +++LA  + + LV TN+S F+ +E+ E
Sbjct: 179  DDYYLELQRHEVTDPNIRANRETFPLQQQANKVLIELAKEYGVKLVCTNDSHFVDKENAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ +A    +    R   +   + K + EM  IFSD+PEAL NTVEI  +      
Sbjct: 239  AHDHLLCLATGKDLDDPTRMLYSKQEWFKTQQEMNDIFSDVPEALANTVEILNKVETYSL 298

Query: 287  VHAPILPRFIEKECDDIQKE---------------------------------------- 306
               PI+P F   E    ++E                                        
Sbjct: 299  DADPIMPFFPIPESFGTEEEWRQKFTEQQLFEEFTTDENGENPLDPEAAEKKIKKLGGYD 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L   A  G E R            +D  +R+ FEL+++  M F GYFLI
Sbjct: 359  KIYRIKFEADYLAKLAYEGAERRYGN------PIPKDVEERVKFELHIMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A+    + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+S+PD 
Sbjct: 413  VQDFINSARDELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRISLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R +V+++V +KYGHE  A IIT+ S+  K +++DV R   +P +  + LCK 
Sbjct: 473  DTDFDDDGRGKVLKWVMDKYGHENCAHIITYASMATKNSIKDVARVENVPLAISNALCKA 532

Query: 479  IPND--------PAHPVSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHA 529
            IP+         P   ++  AI      +EA  + DP +   ++ ++ LEG  R    HA
Sbjct: 533  IPDRLPEVDGKTPKMNLT-NAIKAVPELQEAEASTDPHIANTMKYAKMLEGTVRGTGIHA 591

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             G +I   P+S  VP+      D        TQ++   IE  GLIK DFLGLKTL+ L++
Sbjct: 592  CGFIICRDPISDHVPVSTADDPDFKGTKTNCTQYDGHVIESTGLIKMDFLGLKTLSELKE 651

Query: 585  SLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +   + + RG+ VDL  IP DD +TY L     T+G FQ ES GM++ L  + P   ED+
Sbjct: 652  ACANIKRTRGIDVDLDTIPIDDPKTYELYQQGRTVGTFQFESQGMQKYLRELHPTVFEDL 711

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            IA+ +LYRPGP+D I  +  RKNG+E I      ++  LK+T G+ +YQEQVM +++ L+
Sbjct: 712  IAMNALYRPGPMDYIPSFIARKNGREPITYDIDCMEKYLKDTYGITVYQEQVMLLSRQLA 771

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
             ++  E+D LR+AMGKK K+ +D  K +FI G  KNG    +   I+    KFA Y FNK
Sbjct: 772  DFTRGESDALRKAMGKKKKDIVDAMKPKFIEGGKKNGHDPKVLEKIWADWEKFASYAFNK 831

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAA Y+ ++YQTA++K +YP E++AA M+   D + +I K   + +Q  I  + P VN 
Sbjct: 832  SHAACYSWVAYQTAYLKANYPAEYMAAIMSRRRDQITEITKLMDECKQMGIATLGPDVNE 891

Query: 824  PCVDFKVGDN-RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRV 881
                F V  +  I + L AIKG+G + A  I+ E   + P+  + DF  RV+   +NR+ 
Sbjct: 892  SYEKFGVNHHGEIRFGLGAIKGMGDSAALSIIDEREKNGPYKDIYDFAQRVNFSAVNRKA 951

Query: 882  LESLVFAGALDCFGYSRMQLLQ-------SLDNIQKYAQWVEKNRTNKHENIFAH-EKGT 933
             ESL  +G  D FG  R             ++ + +Y Q  ++ +     ++F    +G 
Sbjct: 952  FESLALSGGFDSFGIRREDYFAKNPKGETFIEMLCRYGQLYQQEQAEMKNSLFGMFGEGV 1011

Query: 934  FSDKITLEKFSV-ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---T 989
               +    K  +  +   R   E+ ++G Y S HPLD YK IL  +      E       
Sbjct: 1012 EIAQPQPPKNDIRWSDIERLNKERELVGIYLSAHPLDEYKIILDNLCNTKCTELADIAKL 1071

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                ++ L  +V +++   T+ G   G VT  +     E 
Sbjct: 1072 ADREDVILGGIVTAQKTGFTKTGKPYGVVTIEDFDGSGEI 1111


>gi|288819165|ref|YP_003433513.1| DNA polymerase III alpha subunit [Hydrogenobacter thermophilus TK-6]
 gi|288788565|dbj|BAI70312.1| DNA polymerase III alpha subunit [Hydrogenobacter thermophilus TK-6]
          Length = 1155

 Score =  959 bits (2478), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1061 (37%), Positives = 581/1061 (54%), Gaps = 71/1061 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSLL+GA+ + ++  K       A+AITD  NLF  LEF +     GI+PI
Sbjct: 4    FVHLHLHTQYSLLDGAIKIKDLAKKARELGYKAVAITDHGNLFGILEFYRSMKKEGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IG +             +             ++L+     G + L++L S  Y       
Sbjct: 64   IGMEAYFTTGSRHDRKGKASEDNITDRYNHHLILIAMNDTGLKNLMQLSSISYQEG-FYY 122

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              RI    L +   EGLI +T    G           + A   +  FK LFG+ LY+ LQ
Sbjct: 123  KPRIDYEVLSQ-HCEGLIAITACLKGVPTHYASLGDEEKATHWVKKFKDLFGENLYLELQ 181

Query: 188  RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             ++  ++   ++ ++ +A    + L+ATN+S +L+ +D  AH VLMAV     + +  + 
Sbjct: 182  SNQLPEQEIANRILINIAKKMGVKLIATNDSHYLNPDDRLAHQVLMAVQMKKTLMEIKQE 241

Query: 247  ----RVTPDHYLKNRSEMVSIF----SDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                      +     E+   F        EAL+NT+E+A +     ++       F + 
Sbjct: 242  SAIKCSNEGLHFAGPEEVWEKFKGKFEGWEEALKNTLEVAEKVQDSFELLENRGYLFPKY 301

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            + +D  K     LR+ AV GL  R+ QG       + +Y  RL++EL V+ RM F GYFL
Sbjct: 302  DTED--KTTAEFLRHLAVKGLRQRIQQGL---AKDSPEYWNRLEYELEVVFRMGFEGYFL 356

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK  +IPVGPGRGS AGS+ A++L ITDIDP++  LLFERFLNP+R+SMPD 
Sbjct: 357  IVQDFINWAKSQSIPVGPGRGSAAGSLLAFSLGITDIDPIKHGLLFERFLNPERISMPDI 416

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC ++RD+VI YV++KYG E VAQIIT+  ++AK  LRDV RAL +PYS  D L KL
Sbjct: 417  DVDFCMEKRDKVIEYVKSKYGEENVAQIITYNVMKAKQTLRDVARALGVPYSVADSLAKL 476

Query: 479  IPNDP--AHPVSLQAIADDS--------------------RFREARLADPSVDRLLEISQ 516
            IP        +SL+ +                        +FR+    +P +  L+EI+ 
Sbjct: 477  IPQGDVQGTWLSLEEMYLVPIKELLDKYGHHRRDIEDHVSKFRKMCSENPEIKTLVEIAL 536

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            KLEGL RH S HAAG+VI   PL + +P+Y D +  +  TQF+M  +E+ GLIK DFLGL
Sbjct: 537  KLEGLTRHTSLHAAGVVISPLPLRERIPLYYD-KDQVLATQFDMVNLEELGLIKMDFLGL 595

Query: 577  KTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            KTLT L++    + +R  V ++   +P DD   Y LL    T G+FQLES GM+  L+ +
Sbjct: 596  KTLTELERMKQLVEERHKVSINYLSLPLDDPLVYELLRKGNTTGVFQLESVGMKNLLKRL 655

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
            +PD  +DI+A+++LYRPGP+ + +V  Y NRK+GKE++  I P ++P+LK+T G+I+YQE
Sbjct: 656  EPDSFDDIVAVLALYRPGPLKSGLVDSYINRKHGKEQVDYIFPELEPVLKDTYGIIVYQE 715

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVM+I+Q+L+G++  +AD LR+A+GKK KE M + KE+FI GA + G ++   + ++  +
Sbjct: 716  QVMKISQVLAGFTPGQADTLRKAIGKKKKEVMQEMKEKFIRGALERGYNQEKVIKLWNDI 775

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             +FA Y FNKSH+ AY  ISY TA+MK HYP EF    ++ E  + +K     +DA+ F 
Sbjct: 776  EEFASYSFNKSHSVAYGYISYWTAYMKAHYPEEFFVVKLSTEKSD-KKFINLIKDAKSFG 834

Query: 814  IQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             +I+ P +N   VDF +    +I + LA IKGVG  TAR I+EA  +  +  L DF   +
Sbjct: 835  FEILQPDINESHVDFTIESKGKIRFGLARIKGVGEDTARSIVEAR-NGRWKGLGDFLKSI 893

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D +K+N+RVLE+L+ AGA D  G SR +LL  +D          K       ++F     
Sbjct: 894  DQRKVNKRVLEALIKAGAFDFTGESREKLLSYMDKA-------SKGGVLPLGDLFGT--- 943

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                        VE      + E+ VLG Y S HP+D ++ +L   G   + E +  ++ 
Sbjct: 944  -----------KVEQKVDPLKYEKEVLGIYISKHPVDPFEKLLS--GKVKWLEELEELQE 990

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   +V   + KKT+ G+ +      +      A  FP
Sbjct: 991  GTYNFVGVVSDLKVKKTKNGTYMATFNLIDKTGIGHAVAFP 1031


>gi|218129192|ref|ZP_03457996.1| hypothetical protein BACEGG_00767 [Bacteroides eggerthii DSM 20697]
 gi|217988570|gb|EEC54890.1| hypothetical protein BACEGG_00767 [Bacteroides eggerthii DSM 20697]
          Length = 1265

 Score =  958 bits (2477), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1147 (31%), Positives = 573/1147 (49%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNGGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC   I        +PIIGC++ +       
Sbjct: 63   KGEIKDLKKRIAGIESGEIACEDKEAEIAACKEKIAEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVSR + +       R   + L++   EGL
Sbjct: 120  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTMG-YYMRPRTDRNELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G I +    +    AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IVCSACIGGEIPKKIINDQLDEAEEAVRWYKNLFGDDFYLELQRHKATVPRANHEAYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   +++++ A  + + ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  QKANAKLLEYAKKYGIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--------- 304
            +K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    +         
Sbjct: 298  MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRKKYTE 357

Query: 305  --------------------------------------KEEENELRNKAVAGLEVRLAQG 326
                                                  K E + L   A  G   RL   
Sbjct: 358  KDLFDEFTQDENGNVVLDEDAAKAKIKRLGGYDKLYRIKLEADYLAKLAFDGA-KRLYGD 416

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
             +     + + ++RL FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS 
Sbjct: 417  PL-----SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V  KYG E+VA 
Sbjct: 472  VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRL KL+P+  P   ++L  AIA     + A  
Sbjct: 532  IITYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQVAEA 591

Query: 504  A-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558
            + DP V   L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+
Sbjct: 592  SPDPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL++++++++ +   RGVK+D+  I   D  TY L     T
Sbjct: 652  EGSVIEDTGLIKMDFLGLKTLSIIKEAVENVRLHRGVKLDIDKISIKDPATYKLYCDGRT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPI 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI+G  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQ 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + 
Sbjct: 832  KNGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLS 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEA 856
            ++  I K   + +   I+++ P VN   + F V       + L A+KGVG      IME 
Sbjct: 892  DITTITKLMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVHSIMEE 951

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907
               + P+  + DF  RV+    N++ LE L  AG  D F    R Q           ++ 
Sbjct: 952  REKNGPYTGIFDFVQRVNLNSCNKKNLECLALAGGFDSFPELKREQYFAVNAKNEVFIET 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         +      +   R   E+ ++G Y S HP
Sbjct: 1012 LVRYGNRYQADKAAAVNSLFGGENVVDIATPEILPAERWSDLDRLNRERDLVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  +L  +      E    A + G  I +  +V S ++  ++ G+  G     + + 
Sbjct: 1072 LDEYSVVLEHVCNTHMAELEDKAALVGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSG 1131

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1132 SAELPFF 1138


>gi|195953981|ref|YP_002122271.1| DNA polymerase III, alpha subunit [Hydrogenobaculum sp. Y04AAS1]
 gi|195933593|gb|ACG58293.1| DNA polymerase III, alpha subunit [Hydrogenobaculum sp. Y04AAS1]
          Length = 1201

 Score =  958 bits (2476), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1085 (37%), Positives = 588/1085 (54%), Gaps = 76/1085 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL+GA+ + ++  K       A+AITD  NLF  + F ++  A GI+P
Sbjct: 3    DFVHLHLHTQYSLLDGAIKIKDLAKKAKEYGYKAVAITDHGNLFGTMSFYKEMKANGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IIG +         +   +G            I+LL     G + L++L S  ++     
Sbjct: 63   IIGMEAYFTTGKRTEHKGKGSEDNITDRINHHIILLAKNDTGLKNLMKLSSIAFIEG-FY 121

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               RI    L E   EGLI LT    G         + ++A   +  FK +FGD LY+ L
Sbjct: 122  YKPRIDYEVL-EQHAEGLIALTACLKGVPTFYAAQGNEEMAYNWVKKFKDIFGDDLYLEL 180

Query: 187  Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q  H          ++ +A  + +   ATN+  +L EED  AH+VLMA+     + +   
Sbjct: 181  QSNHIPAQETANKTLIDIAKRYNVKFAATNDCHYLLEEDLRAHNVLMAIQMKKTLQELGE 240

Query: 246  PRVTP--DHYLKNRSEMVSIF----SDLPEALENTVEIARRCSFILQVHAPILPRFIEK- 298
                     +  +  EMV  F    S+  +AL NTVEI+ + +  L +      +F E  
Sbjct: 241  DAFGHYDGMHFASYEEMVKKFEGKWSEWEKALLNTVEISEKVADSLSIFEDKSYKFPEFF 300

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            + DDI     + LRN AV GL+ R+ +  I+K    ++Y  RL++EL VI  M F  YFL
Sbjct: 301  KGDDINVNISSYLRNLAVEGLKSRIQKSQISKNIPEKEYWDRLNYELEVIQNMGFDSYFL 360

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV+DFI W+K NNIPVGPGRGS AGS+ A+AL ITD+DPL+  L+FERFLNP+R+SMPD 
Sbjct: 361  IVSDFINWSKSNNIPVGPGRGSAAGSLVAFALNITDVDPLKHGLIFERFLNPERISMPDI 420

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC D RD+VI YV+ KYG + VAQIIT+ +++AK  LRDV RA+ M Y   D L KL
Sbjct: 421  DVDFCMDNRDKVIEYVKEKYGKDSVAQIITYNTMKAKQTLRDVARAMGMAYKDADVLAKL 480

Query: 479  IP--NDPAHPVSLQAIADDS-------------------RFREARLADPSVDRLLEISQK 517
            IP  N     +SL+ +                       +FR+    DP +  L+EIS K
Sbjct: 481  IPQGNVQGTWLSLEEMYITPIEELMERYGHRGDIEDNVKKFRDLAKKDPQIKELVEISIK 540

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRD----VRSDLPVTQFNMKWIEKAGLIKFDF 573
            LEGL RH S HAAGIVI  +PL +L P+Y D      +    TQ++M  +E+ GL+K DF
Sbjct: 541  LEGLTRHTSLHAAGIVIAPKPLIELAPLYLDKSVKDDTGNIATQYDMAHLEELGLVKMDF 600

Query: 574  LGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGLKTLT L K  + + Q +GV +D   + F++ E Y  L T  T+G+FQLES GMR+ +
Sbjct: 601  LGLKTLTELWKMKELVKQNKGVDIDFLSLDFNNKEIYEFLATGETIGVFQLESKGMRELI 660

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
            + ++PD  EDI+A ++LYRPGPI + +V  + NRK GKEK+V     ++ +LKET G+I+
Sbjct: 661  KRLKPDRFEDIVAALALYRPGPIKSGMVDKFINRKLGKEKVVYEFEELEEVLKETYGLIV 720

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQ+M I+ +L+G+++ EAD LR+A+GKK  + M K K+ FI  + + G  K     ++
Sbjct: 721  YQEQIMFISNILAGFTMGEADNLRKAIGKKKADLMAKIKDDFIRRSCERGYPKDKIEKLW 780

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
              + +FA Y FNKSH+ AY  IS+ TA++K +YP EF A   + E  + +K     +DA+
Sbjct: 781  SEIEEFASYSFNKSHSVAYGYISFWTAYVKLYYPDEFYAVKFSTENSD-KKFINLLKDAK 839

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHI--MEASADKPFDSLED 867
             F I+++PP VN   VDFK+   R I + L  IKGVG  TARHI  M+    + F S +D
Sbjct: 840  SFGIKVLPPDVNKSDVDFKIEVPRHIRFGLGRIKGVGEDTARHIKSMQEKIGRDFLSFQD 899

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCF-----GYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
            F    D++K+N++VLE+L  AGA D         +R   L  L          +   +  
Sbjct: 900  FTKNTDNRKVNKKVLEALSKAGAFDSLIEKSGYKNREDFLSRL-------LNSQDISSIA 952

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK-MGIK 981
              ++F  +    +     E+    +S    + E+ VLGFY SGHPLD Y  IL     I 
Sbjct: 953  QRSLFGIKASKST-----EQMEQSSSIDILKLEKEVLGFYISGHPLDKYSWILSHNKDIT 1007

Query: 982  GYEE---------SVATIRGNNI----RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
              E+         ++ +  G N      +  ++   Q KKT+ GS +      +     E
Sbjct: 1008 NIEDIDFDNMPNQAIDSEAGQNASAEYTIVGVISDLQIKKTKNGSYMAIFNLVDKTDIVE 1067

Query: 1029 ANFFP 1033
               FP
Sbjct: 1068 VVVFP 1072


>gi|71065735|ref|YP_264462.1| DNA polymerase III, alpha subunit [Psychrobacter arcticus 273-4]
 gi|71038720|gb|AAZ19028.1| DNA polymerase III, alpha subunit [Psychrobacter arcticus 273-4]
          Length = 1247

 Score =  958 bits (2476), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1065 (36%), Positives = 603/1065 (56%), Gaps = 70/1065 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +HS YS+ +  + +  ++   AAD Q A+A+TD +NL++ ++F +    AGI+P
Sbjct: 2    AFVHLGIHSEYSITDSIVRIKPLVKAAAADNQRALALTDLSNLYATVKFYRACLGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----G 125
            IIG ++ ++ +D                 + LL    EGYQ +  +VS  +   +     
Sbjct: 62   IIGSEVIMENED---------------TRLTLLAMDNEGYQNITRIVSLGFTEGRADPVN 106

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
              +  I  S + E    G+I+L       + +A   +  + A++ +  ++  F DRLY  
Sbjct: 107  HGTPVIKRSHILE-HGAGVIVLFT-EKSDVGQALVGSMPEKADELITEWQASFDDRLYFA 164

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            ++R +R  +       +     H +P++A N+  FL ++D++AH+  + +A S V++ ++
Sbjct: 165  IKRTNRTGEDAFIKAAIHSGAKHHIPIIAHNDVRFLEQDDFDAHEARVCIAGSYVLADQN 224

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP+  +   YLK +++M  +F+D+P+ ++NT+ +A RC+  L +   +LP F   E +  
Sbjct: 225  RPQTYSDAQYLKTQAQMQQLFADIPQVIDNTLRLATRCNVTLTLGINVLPEFPVPEGE-- 282

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGY------HAQDYRQRLDFELNVIARMKFSGYF 357
                E+  R ++  GLE RL +               Q Y +RL++EL VI  M F GYF
Sbjct: 283  --TTESFFRLESQRGLENRLDKLFPVDARSDHWSDIRQRYDERLEYELKVILSMGFPGYF 340

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLNP+R+SMPD
Sbjct: 341  LIVMDFIRWAKANGVPVGPGRGSGAGSLVAYALNITDLDPIHYDLLFERFLNPERVSMPD 400

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC + RD VI YV   YG E V+QIITFG++ AKA +RDV RA    Y    ++ K
Sbjct: 401  FDIDFCIEGRDRVIDYVAQTYGREAVSQIITFGTMAAKAVVRDVARAQSKSYFLASKMSK 460

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVD-----RLLEISQKLEGLYRHASTHAAGI 532
            LIP  P   +S QA+  + + ++      ++D      + E++ KLEG+ R+   HA G+
Sbjct: 461  LIPKTPGITLS-QALEQEPQLKDLISNPDNMDYEDAIEVWEMAIKLEGICRNVGKHAGGV 519

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            +I    ++    +Y D      V+QF+   +E  GL+KFDFLGL+ LT++  +++ + +R
Sbjct: 520  LIAPHKITDFSAIYCD-DEGHRVSQFDKDDVEAVGLVKFDFLGLRNLTVISAAVENINKR 578

Query: 593  GVKVD-----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
              K       L  +P DD + Y LL    T  +FQLES GM++ L  +QP  IED+IA+ 
Sbjct: 579  RAKEGKEALVLEDLPLDDAKAYKLLQDAKTTAVFQLESMGMKKYLAKLQPTNIEDVIAMC 638

Query: 648  SLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +LYRPGP+D  +V  Y +RK+G+E+++  HP ++P+L+ T GVI+YQEQVMQI+Q+++GY
Sbjct: 639  ALYRPGPLDAGMVEMYIDRKHGREEVIYDHPNLEPILENTNGVIVYQEQVMQISQVMAGY 698

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL  AD+LRRAMGKK  EEM KQ++ F++GA+  GI +  +  +F+L+ KFA YGFN+SH
Sbjct: 699  SLGGADMLRRAMGKKKPEEMAKQRDIFVTGATAQGIDEATSGGVFDLMEKFAGYGFNRSH 758

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTP 824
            +AAY V++YQTA++K +YP EF+AA +T +M+N + +  F  D R  F + ++ PSVN  
Sbjct: 759  SAAYGVLAYQTAYLKQYYPAEFMAAVLTSDMNNTDNVVFFINDCRENFALTVVNPSVNRS 818

Query: 825  CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVL 882
               F       I Y L AIKGVG      I+EA   + PF  L DFC RVD KK+N+R L
Sbjct: 819  EWHFVADTPTNIIYGLGAIKGVGEGAVESIVEARRREGPFKDLYDFCRRVDIKKVNKRTL 878

Query: 883  ESLVFAGALDCFGYS-------------RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            E L+ AG  D F  +             R  L+  L +  + A+   +NR     ++F  
Sbjct: 879  EGLINAGCFDDFAATLRPDLPSDEAYEIRGALMSQLPSAVQAAEQDRQNREIGMMDLFGE 938

Query: 930  EKG-TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESV 987
              G   +  + +    +     R + E+  LG Y +GHP+D Y+  L++       ++  
Sbjct: 939  MDGVVAAPPLVMTPELIWGDKHRLKAEKNTLGLYLTGHPIDEYRDELKRYTSGARLDKLA 998

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             T    +   A +++      TR       +T  +     E + +
Sbjct: 999  DTGYNGSCYFAGLIIDIANFGTRN-----VITLDDGTSRLEVSCY 1038


>gi|305665420|ref|YP_003861707.1| DNA polymerase III subunit alpha [Maribacter sp. HTCC2170]
 gi|88710175|gb|EAR02407.1| DNA polymerase III alpha subunit [Maribacter sp. HTCC2170]
          Length = 1478

 Score =  958 bits (2476), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1100 (31%), Positives = 548/1100 (49%), Gaps = 91/1100 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------------ 58
            F HL  H+ +S+L+  +S+ +++     +  PA+A+TD  N+  A  F            
Sbjct: 261  FAHLHNHTQFSILQSTISVADLVQATVKNNMPAVAMTDHANMMGAFHFVNGVINHNKGVI 320

Query: 59   ---------SQKAC----AAGIQPI-------IGCQLDIDMQDNLKMTNQGKTPFPTVPS 98
                      +         G +P+             +  +  +   +  KT       
Sbjct: 321  SRNEEKQKRYEATQNGTLEEGQEPLEELPTLEKEITPIVGCEFQVCEDHTDKTQKDNGYQ 380

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            IV+L     GY  L ++ S  ++  +     RI    +++   E +I+LTG   G +   
Sbjct: 381  IVMLAKNKNGYHNLAKMSSIAFVDGK-YYVPRIDKRIIEQY-KEDVIVLTGNLYGEVPSK 438

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNS 217
                  + AE  L+ +K+ FGD LY+ L RH   D  R +Q ++Q A  + + L+A+NN+
Sbjct: 439  VLNVGEKQAEDALIWWKETFGDDLYIELMRHNQEDETRVNQVLIQFAKKYNIKLIASNNT 498

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEA 270
             +  +E+  AHD+L+ V      +                ++Y K+  EM  +F D+PEA
Sbjct: 499  YYTEKENANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSSEEMKELFKDIPEA 558

Query: 271  LENTVEIARRCSFILQVHA--------PILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            + N  E+  +                 P   +F E   D  ++ E   LR+    G + R
Sbjct: 559  ITNIQEVIDKVETYTLARDVLLPAFDIPKEFQFEEDRADGGKRGENKYLRHITYEGAKKR 618

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
              +          +  +RLDFEL VI    + GYFLIV DFI+ A+  N+ VGPGRGS A
Sbjct: 619  YEE-------ITPEIDERLDFELKVIENTGYPGYFLIVEDFIRAARDMNVSVGPGRGSAA 671

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GS  AY L IT++DP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV +KYG  +
Sbjct: 672  GSAVAYCLWITNLDPIKYDLLFERFLNPDRISMPDIDIDFDDEGRGRVMDYVIDKYGSNQ 731

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI--ADDSRFRE 500
            VAQIIT+G++ AK+++RD  RAL +P    DR+ KLIPN       L+ I   DD+  + 
Sbjct: 732  VAQIITYGTMAAKSSIRDTARALDLPLGDADRMAKLIPNMS----KLKKIIGVDDAVLKS 787

Query: 501  ARLADP--SVDRLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               ++    V+ LL I++              LEG  R+   HA G++I    +++ VP+
Sbjct: 788  KFNSEELLKVNELLNIAEGEGLESETLNQAYVLEGSVRNTGIHACGVIITPDDITKFVPV 847

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604
                 S++  TQF+   +E AGL+K DFLGLKTLTL++ ++  +  + G+++D    P D
Sbjct: 848  ALAKDSEMYCTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKIVKAKHGIELDPENFPLD 907

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY L     T+G+FQ ES GM++ +  ++P    D+IA+ +LYRPGP++ I  +  R
Sbjct: 908  DEKTYELFQRGETVGVFQYESPGMQKHMRSLKPTVFADLIAMNALYRPGPMEYIPSFIAR 967

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G E+IV      +  L ET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK K  
Sbjct: 968  KHGTEEIVYDLDACEEYLAETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQKHV 1027

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +DK K +FI  AS  G +      I++    FA Y FNKSH+  YA I+YQTA+ K HYP
Sbjct: 1028 LDKMKPKFIEKASAKGHAVDKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYCKAHYP 1087

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             E++AA ++  M++++++  F ++ ++  ++++ P VN     F V   N + + + AIK
Sbjct: 1088 AEYMAAVLSNNMNDIKQVTFFMEECKRMGLEVLGPDVNESYYKFAVNQNNAVRFGMGAIK 1147

Query: 844  GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY-SRMQL 901
            GVG      I+E    + P+ S+ D   R+D +  N++  ESL  AG  D FG   R Q 
Sbjct: 1148 GVGRGAVETIVENRKEEGPYKSVFDMAKRIDLRASNKKAFESLAVAGGFDSFGATHRAQY 1207

Query: 902  LQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +       L+ + K     ++N+ +   ++F         +  +       +  +   
Sbjct: 1208 FHTEGDGVTFLEKVIKSGSKYQENKNSSQMDMFGGMSEAQIPEPVVPPCEEWGTMEKLRR 1267

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKG 1012
            E+ V+G Y SGHPLD +K  +               +     I  A ++   Q +  + G
Sbjct: 1268 EKEVVGIYISGHPLDDFKSEINAFTNGTISCFTDLPKYVNREISFAGVITDVQHRIAKNG 1327

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
                  T  +    +E   F
Sbjct: 1328 KGWALFTLEDYMDTFEFRIF 1347


>gi|329957519|ref|ZP_08297994.1| DNA polymerase III, alpha subunit [Bacteroides clarus YIT 12056]
 gi|328522396|gb|EGF49505.1| DNA polymerase III, alpha subunit [Bacteroides clarus YIT 12056]
          Length = 1265

 Score =  957 bits (2475), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1147 (31%), Positives = 574/1147 (50%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNGGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +PIIGC++ +       
Sbjct: 63   KGEIKDLKKRIAGIESGEIACEDKEAEIAACKAKITEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L     GY  LI+LVSR + +       R   + L++   EGL
Sbjct: 120  MDKKEGKPDQSGYHLIVLAKNETGYHNLIKLVSRAWTMG-YYMRPRTDRNELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +    +  + AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IVCSACIGGEVPKKIINDQLEEAEEAIRWYKNLFGDDYYLELQRHKATVPRANHEAYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   +++++ A  + + ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  QKANAKLLEYARKYNIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--------- 304
            +K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    +         
Sbjct: 298  MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 357

Query: 305  --------------------------------------KEEENELRNKAVAGLEVRLAQG 326
                                                  K E + L   A  G   R+   
Sbjct: 358  KDLFDEFTQDENGKVVLDEEAAKAKIKRLGGYEKLYRIKLEADYLAKLAFDGA-KRIYGD 416

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
             +     + + ++RL FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS 
Sbjct: 417  PL-----SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V  KYG E+VA 
Sbjct: 472  VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRL KL+P+  P   ++L  AIA     + A  
Sbjct: 532  IITYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEA 591

Query: 504  A-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558
            + DP V   L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+
Sbjct: 592  SPDPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL++++++++ +   RG+ +D+  I  +D  TY L     T
Sbjct: 652  EGSVIEDTGLIKMDFLGLKTLSIIKEAVENVRLHRGLALDIDKISINDPATYKLYCDGRT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELQPGTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPI 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI+G  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQ 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + 
Sbjct: 832  KNGHDAKVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLS 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEA 856
            ++  I K   + +   I+++ P VN   + F V       + L A+KGVG    + IME 
Sbjct: 892  DITTITKLMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVQSIMEE 951

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907
               + P+  + DF  RV+    N++ LE L  AG  D F    R Q           ++ 
Sbjct: 952  REKNGPYTGIFDFVQRVNLNACNKKNLECLALAGGFDSFPELKREQYFAVNAKNEVFIET 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         +      +   R   E+ ++G Y S HP
Sbjct: 1012 LVRYGNRYQADKAAAVNSLFGGENVVDIATPEILPAERWSDLDRLNKERDLVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  +L  +      E      + G  I +  +V + ++  ++ G+  G     + + 
Sbjct: 1072 LDEYSVVLEHVCNTHMAELEDKTLLVGREITMGGIVTTVRRGISKNGNPYGIAKIEDYSG 1131

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1132 SAELPFF 1138


>gi|241667125|ref|ZP_04754703.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
            philomiragia ATCC 25015]
 gi|254875679|ref|ZP_05248389.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC
            25015]
 gi|254841700|gb|EET20114.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC
            25015]
          Length = 1159

 Score =  957 bits (2475), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1042 (37%), Positives = 589/1042 (56%), Gaps = 39/1042 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL++H+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A + G++PI
Sbjct: 2    FSHLRIHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALSNGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSV 129
             G +L ID +               V  +VLL    +GYQ ++ LVS+ Y   D+     
Sbjct: 62   FGVELKIDTEFG-------------VCDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIP 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             I   WL++I    +I L GG +G + +A         E+ +     +F  D   + + +
Sbjct: 109  LIPKDWLKDINLANVICLNGGQNGELGKAILAKDDIRVEEIISENIAIFGRDNYIIEIHK 168

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                +      + ++ A  H L  VATN ++F+  +DY+ H++   +   T +  + R  
Sbjct: 169  LEYENEGLYNEKALEFASKHNLIAVATNLTVFMESDDYDIHEIRACINEKTTILDESRKS 228

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + T + YLK+  EM   FS+LP  LENT+ IA+RC+    +  P LP     +       
Sbjct: 229  KFTREQYLKSADEMYQTFSELPVLLENTLVIAKRCNVTFDLGKPCLPTVDIPDG----LT 284

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVIARMKFSGYFLIVA 361
            E          GL+ RLA+    +     +     Y+ RL  E+++I  M F GYFLIV 
Sbjct: 285  EREYFSKLCYQGLDKRLAKILENRPVDKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVE 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDID
Sbjct: 345  DFIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDID 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC   RD VI+YV+ KYG + V QIIT+G++ AK  +RDV R +   +   DR+ KLIP 
Sbjct: 405  FCIQGRDRVIKYVEQKYGKQSVGQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPE 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P      + + +     +   AD  V  ++E +QKLEGL R    HAAGIVI    +S 
Sbjct: 465  TPGTTFK-KILHEGEPLYDEMQADEEVAEIVEKAQKLEGLPRSLGKHAAGIVISPTVISD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG----VKVD 597
              P+Y + +    VTQF+   +E  GL+KFDFLGLK LT+++ ++  +  +     V +D
Sbjct: 524  FAPVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIIKNAIASINAKRSANEVPLD 583

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +S IP DD +T+ LL    T+GIFQLES GM+Q ++ +     E+IIALV+LYRPGP++N
Sbjct: 584  ISDIPLDDEKTFKLLQAGKTIGIFQLESQGMQQIVKDLGTSNFEEIIALVALYRPGPMEN 643

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  + +RK+G+++ + +HPL++ +L+ET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAM
Sbjct: 644  IPTFVDRKHGRKQTIYLHPLLEEVLRETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAM 703

Query: 718  GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            GKK  EEM++Q++ F  GA+K + I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQT
Sbjct: 704  GKKKPEEMEQQRKIFKEGAAKYHNIEAGLADEIFDQMEAFAGYGFNKSHAAAYALIAYQT 763

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRI 835
            AW+K HYP E++AA M+ +M N +++ KF  DA+   I ++ P+VN    D        I
Sbjct: 764  AWLKAHYPDEYMAALMSGDMGNTDQLVKFILDAKNMGITVLAPNVNKSVYDCIAASKGTI 823

Query: 836  YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               L AIKG+G+   + I+        F S+ D   RVD +K+N++ LE+L FAGA+   
Sbjct: 824  LLGLGAIKGLGSEAIKSILNEREVGGEFSSIFDLTRRVDLRKVNKKALEALCFAGAIKDI 883

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVR 951
              +R     S++   K A +V +       ++F   +        LE+       N    
Sbjct: 884  SKNRATAFNSIEKAIKNAGYVNEMAAAGQNDLFGFTEQESDTDTELERECIVEEWNLREL 943

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-ATIRGNNIRLAA-MVVSKQQKKT 1009
              NE++ LG YFSGH +D        +     E+     + GN++R+ A M+    ++KT
Sbjct: 944  LINEKKALGMYFSGHIIDGESHWRNHVSFSDLEKIQKPNMDGNSVRIIASMITPPARRKT 1003

Query: 1010 RKGSRIGWVTFSEPAKEYEANF 1031
            + G  +  +   +     +   
Sbjct: 1004 KTGRVLYIINIDDEFDRADCLV 1025


>gi|281423616|ref|ZP_06254529.1| DNA polymerase III, alpha subunit [Prevotella oris F0302]
 gi|281402168|gb|EFB32999.1| DNA polymerase III, alpha subunit [Prevotella oris F0302]
          Length = 1235

 Score =  957 bits (2474), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1114 (32%), Positives = 544/1114 (48%), Gaps = 99/1114 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62
             F+HL VH+ YS+L+G   ++N+++K   +    +AITD   +F   EF+          
Sbjct: 3    DFIHLHVHTYYSVLDGQSKISNLVNKAVENGMKGMAITDHGVMFGIKEFADYCAGVNKKR 62

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
             A G++P              ++ ++ K     +   +++L     GY+ LI+LVS+ ++
Sbjct: 63   KADGLEPFKPILGCEMYVARHRLQDKVKEHGDNSGYHLIVLAKNYNGYKNLIKLVSKSWM 122

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                    R     L++   E LI+ +   +G +      +  + A +    + ++FGD 
Sbjct: 123  EG-YYYRPRTDRVELEKYH-EDLIVCSACIAGEVPSKIIKDDLEGAREACEWYHRVFGDD 180

Query: 182  LYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             Y+ LQRH   D             +     +++ A  + + ++ TN+  F  +E  EAH
Sbjct: 181  YYLELQRHEVKDPTILANREAFPLQQKANKVLLEFAKEYGIKVICTNDVHFEDKETAEAH 240

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            D L+ ++    +   +R R +   + K R EM  IFSD+PEAL NT+EI  +       H
Sbjct: 241  DHLLCLSTGKDLDDPNRMRYSKQEWFKTREEMNDIFSDVPEALSNTLEIFDKVELYSIEH 300

Query: 289  APILPRFIEKECDDIQ-------------------------------------------- 304
             PI+P F   E    +                                            
Sbjct: 301  GPIMPFFPIPESFGTEEGWRKKFTEADLYREFTSDENGENPLSQEEGQKVIDRLGGYDKI 360

Query: 305  ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               K E + L   A  G   RL    +       + R+ ++FEL+V+  M F GYFLIV 
Sbjct: 361  YRIKFEADYLAKLAYDGA-KRLYGDPV-----PDNVREHINFELHVMKTMGFPGYFLIVQ 414

Query: 362  DFIQWAK-KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            DFI  A+    + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D 
Sbjct: 415  DFINAARTDLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDT 474

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  D R +V+R+V +KYGHE  A IIT+ S+  K +++DV R  ++P  + + LCK IP
Sbjct: 475  DFDDDGRGKVLRWVMDKYGHENCAHIITYASMATKNSIKDVARVERLPLDKSNFLCKAIP 534

Query: 481  NDPAHPVSLQ---AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +     + +    AI      REA ++ DP     ++ ++ LEG  R    HA G +I  
Sbjct: 535  DRLPDGLKMNLTNAIKCTPELREAEVSQDPRERNTIKYAKMLEGTVRGTGIHACGFIICR 594

Query: 537  RPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             P+S  VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   + +
Sbjct: 595  DPISNWVPVSTADDPDFPGLKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVVKK 654

Query: 592  RG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +DL  IP DD  TY L     T+G FQ ES GM++ L  + P   ED+IA+ +LY
Sbjct: 655  TVGDDIDLDNIPIDDELTYQLYQQGRTIGTFQFESPGMQKYLRELHPTVFEDLIAMNALY 714

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+
Sbjct: 715  RPGPMDYIPDFIKRKNDPTLVTYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGES 774

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D LR+AMGKK K  +D  K +FI    +NG    +   I+    KFA Y FNKSHA  Y+
Sbjct: 775  DALRKAMGKKKKAIVDAMKPKFIKQGQENGHDPKVLEKIWGDWEKFASYAFNKSHATCYS 834

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++YQTA+MK HYP E++AA MT     + +I K  ++ +   I  + P VN    +F V
Sbjct: 835  WVAYQTAYMKAHYPAEYMAALMTRRFSQITEITKLMEECQSMKIATLGPDVNESYSEFGV 894

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                 I + L+AIKG+G T A  I++    + P+  + DF  RVD   +NR+  ESL  +
Sbjct: 895  NKKGEIRFGLSAIKGMGETAALSIVKERETNGPYKDIYDFAERVDYGCVNRKAFESLALS 954

Query: 889  GALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            G  D F + R Q   +       LD + +Y Q  ++ +     ++F  E      +    
Sbjct: 955  GGFDGFEFRREQYFAAGMKGDVFLDTLVRYGQLYQQEQREAKNSLFGGESAVEISRPVPG 1014

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIRLA 998
                 ++  R   E+ ++G Y S HPLD Y  IL+ M      E        +   I + 
Sbjct: 1015 NAEDWSTIERLNRERDLVGIYLSAHPLDEYGVILKSMCNTHCVEIDKKEELAKKEEISIG 1074

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +V   + K T+ G   G+VT  +     E  FF
Sbjct: 1075 GIVTGVKSKFTKNGKPCGFVTLEDFEGSGELAFF 1108


>gi|282879110|ref|ZP_06287869.1| putative DNA polymerase III subunit alpha [Prevotella buccalis ATCC
            35310]
 gi|281298752|gb|EFA91162.1| putative DNA polymerase III subunit alpha [Prevotella buccalis ATCC
            35310]
          Length = 1235

 Score =  957 bits (2474), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1116 (32%), Positives = 560/1116 (50%), Gaps = 103/1116 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62
             FVHL VH+ YS+L+G   +  ++DK  AD    +AITD  N+F   EF   A       
Sbjct: 3    DFVHLHVHTYYSILDGQSPVKRLVDKAVADGMRGLAITDHGNMFGIKEFFDYANTVNKQL 62

Query: 63   CAAG---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
             A G    +PI GC++ +  +              +   +++L     GY+ LI+LVS  
Sbjct: 63   KADGKQPFKPIFGCEMYVARRSRFDKVK--DMGDMSGYHLIVLAKNYRGYKNLIKLVSHA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +  +      R     L++   E LI+ +   +G + R         A + +  +K++FG
Sbjct: 121  W-EEGYYMRPRTDREELEKYH-EDLIVCSACLAGEVPRKIIAGDMAGAREAVEWYKRVFG 178

Query: 180  DRLYVNLQRHRGYD------------RYRESQVV-QLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ +QRH   D            + R +QV+  LA  + + +V TN+  F+ +E+ E
Sbjct: 179  DDYYLEIQRHEVKDPSIRANREAYPMQQRANQVIFNLAKEYGVKVVCTNDVHFVDKENAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    +    R   +   + K R EM SIFSD+PE + NT+EI  +      
Sbjct: 239  AHDHLLCLSTGKDLDDPTRMLYSKQEWFKTREEMNSIFSDVPETMANTLEILNKVETYSI 298

Query: 287  VHAPILPRFIEKE-------------CDDIQKE--------------------------- 306
             H PI+P F   E              +D+ +E                           
Sbjct: 299  NHDPIMPNFPIPESFGKEEDWKQKFTEEDLLREFTTDENGENPMSEEDAQKRVDHLGGYE 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L++ A  G +              ++   R+ FEL+V+  M F GYFLI
Sbjct: 359  KMYRIKFEADYLQHLAYEGAKPLYGD------PLPKEVDDRIRFELHVMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V+DFI+ A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+S+PD 
Sbjct: 413  VSDFIRAAREELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRISLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R +V+++V +KYGHE  A IIT+GS+  K +++DV R  ++P  + + LCK 
Sbjct: 473  DTDFDDDGRGKVLKWVMDKYGHENCAHIITYGSMATKNSIKDVARVEKLPLERANALCKA 532

Query: 479  IPNDPAHPVSL---QAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP      + +    AI      + A ++ D      ++ ++ LEG  R    HA G +I
Sbjct: 533  IPERLPDKMKMNLNNAIKCTPELQMAEVSTDIRESNTIKYAKMLEGTVRGTGIHACGFII 592

Query: 535  GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+S  VP+      D        TQ++   IE+ GLIK DFLGLKTL+ L++++  +
Sbjct: 593  CRDPISDWVPVSTADDPDFKDEKTNCTQYDGHVIEETGLIKMDFLGLKTLSELKEAVKNV 652

Query: 590  A-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
               + + +DL  IP DD  TY L     T+G FQ ES+GM+  L  + P   ED+IA+ +
Sbjct: 653  KLTKNIDIDLDKIPIDDELTYKLYQEGRTIGTFQFESAGMQNYLRQLSPTKFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+DNI  +  RK G+E+I    P+++  LK+T G+ +YQEQVM +++LL+ ++  
Sbjct: 713  LYRPGPMDNIPSFIARKKGEEEITYPIPVMERYLKDTYGITVYQEQVMLLSRLLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E+D LR+AMGKK K  +D  K +FI G  KNG  + +   I+    KFA Y FNKSHAA 
Sbjct: 773  ESDALRKAMGKKKKAIVDAMKPKFIEGGKKNGYDENVLDKIWADWEKFASYAFNKSHAAC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ +++QTA++K HYP EF+AA M+   D + +I K   + +   I  + P VN     F
Sbjct: 833  YSWVAFQTAYLKAHYPAEFMAAIMSRRKDQITEISKLMDECKSLRIATLGPDVNESYQKF 892

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V     I + LAAIKG+G   A  I+ E  A   +  + DF  RVD  ++NR+  ESL 
Sbjct: 893  GVNHKGEIRFGLAAIKGMGDAAATAIIQEREAHGLYQDIFDFAHRVDFTQVNRKAFESLA 952

Query: 887  FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
             +G  D FG  R     +       +D + +Y Q  +  ++    ++F            
Sbjct: 953  LSGGFDSFGIPRESYFTANSKGELFIDTLVRYGQLYQNKKSEIEHSLFGGVDAVEIATPP 1012

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIR 996
            + K  + ++  +   E  ++G Y S HPLD +  +L+ M      E        +  ++ 
Sbjct: 1013 IPKPELWSNIEKLNREHDLVGIYLSAHPLDEFSIVLKSMCNTSCTELGDKAELAKKADVV 1072

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             A M+   + K TR G   G+VT  + +   E  FF
Sbjct: 1073 FAGMITEVKDKFTRTGKPCGFVTIEDFSGTGEIAFF 1108


>gi|282880114|ref|ZP_06288834.1| putative DNA polymerase III subunit alpha [Prevotella timonensis CRIS
            5C-B1]
 gi|281305987|gb|EFA98027.1| putative DNA polymerase III subunit alpha [Prevotella timonensis CRIS
            5C-B1]
          Length = 1235

 Score =  957 bits (2473), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1116 (32%), Positives = 560/1116 (50%), Gaps = 103/1116 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS-------QKA 62
             +VHL VH+ YS+L+G   +  ++DK  AD    +AITD  N+F   EF        +K 
Sbjct: 3    DYVHLHVHTYYSILDGQSPIKRLVDKAVADGMQGMAITDHGNMFGIKEFFDYTNSVNKKL 62

Query: 63   CAAG---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
             A G    +PI GC++ +  +       +      +   +++L     GY+ LI+LVSR 
Sbjct: 63   KAEGKQPFKPIFGCEMYVARRTKQDKVKE--MGDMSGYHLIVLAKNYNGYKNLIKLVSRS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++ D      R   + L++   E LI+ +   +G + R       +   + +  +K++FG
Sbjct: 121  WV-DGYYMRPRTDRADLEKYH-EDLIVSSACLAGEVPRKILKGDMEGVRETIEWYKRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +  Y+ +QRH   D             +     +++LA  + + ++ TN+  F+ +++ E
Sbjct: 179  EDYYLEIQRHEVKDPHIRANREAYPLQQRANKVILELAKEYGVKVICTNDVHFVDQDNAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    +    R   +   + K R+EM  +F DLPE L NT+EI  +      
Sbjct: 239  AHDHLLCLSTGKDLDDPTRMLYSKQEWFKTRAEMNQVFDDLPEVLTNTLEILDKVEAYSI 298

Query: 287  VHAPILPRFIEKECDDIQKE---------------------------------------- 306
             H PI+P F   +    ++E                                        
Sbjct: 299  NHDPIMPNFPIPKSFGTEEEWEQKFSKEDLYREFTTDENGENPLSEADALKRIEHLGGYE 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L      G               +++   R+ FEL+V+  M F GYFLI
Sbjct: 359  KMYRIKFEADYLEQLTYEGARKIYGDS------FSKEIDDRIRFELHVMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V+DFI+ A++  ++ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+S+PD 
Sbjct: 413  VSDFIRAAREELSVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRISLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R +V+++V +KYGHE  A IIT+GS+  K +++DV R  ++P ++ + LCK 
Sbjct: 473  DTDFDDDGRGKVLKWVMDKYGHENCAHIITYGSMATKNSIKDVARVEKLPLNRSNALCKA 532

Query: 479  IPNDPAHPVS---LQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP+     +    + AI      R+A  + D      ++ ++ LEG  R    HA G +I
Sbjct: 533  IPDRLPDGLKMNLINAIKCTPELRDAEASTDIRESNTIKYAKMLEGTVRGTGIHACGFII 592

Query: 535  GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+S  VP+      D        TQ++   IE+ GLIK DFLGLKTL+ L++++  +
Sbjct: 593  CRDPISDWVPISTADDPDFKDEKTNCTQYDGHVIEETGLIKMDFLGLKTLSELKEAVKNV 652

Query: 590  A-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
               RG+ +DL  IP DD  TY L     T+G FQ ESSGM+  L  + P    D+IA+ +
Sbjct: 653  KLTRGIDIDLDNIPIDDELTYQLYQEGRTIGTFQFESSGMQNYLRQLCPTKFGDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+DNI  +  RK G E I    P+++  LK+T G+ +YQEQVM +++LL+ ++  
Sbjct: 713  LYRPGPMDNIPSFIARKKGLEPISYPIPIMEKYLKDTYGITVYQEQVMLLSRLLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E+D LR+AMGKK K  +D  K +FI G  KNG    I   I+    KFA Y FNKSHAA 
Sbjct: 773  ESDALRKAMGKKKKAIVDAMKPKFIEGGKKNGYDPKILDAIWADWEKFASYAFNKSHAAC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ +++QTA++K HYP EF+AA M+   D + ++ K   + +  NI  + P VN     F
Sbjct: 833  YSWVAFQTAYLKAHYPAEFMAAIMSRRKDQITEVSKLMDECKSMNIATLGPDVNESYEKF 892

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V  +  I + LAAIKG+G   A+ I+ E  A   +  + DF  RVD   +NR+  ESL 
Sbjct: 893  GVNHHGEIRFGLAAIKGMGNAAAKAIIDEREAHGTYKDIFDFVQRVDFTNVNRKAFESLA 952

Query: 887  FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
             +G  D FG  R     +       ++ + +Y Q  +  ++    ++F  E         
Sbjct: 953  LSGGFDSFGLPRESYFTANAKGELFVETLVRYGQLYQTKKSELEHSLFGGENAVEIATPA 1012

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI---RGNNIR 996
            + K  + ++  R   E  ++G Y S HPLD Y  +L+ M      E        + +NI 
Sbjct: 1013 IPKPELWSNIERLNKEHELVGIYLSAHPLDEYSIVLKTMCNTQCCELADRAELSKKSNIV 1072

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               M+   + K T+ G   G+VT  + +   E  FF
Sbjct: 1073 FGGMITDVKDKFTKTGKPCGFVTIEDFSGSGELAFF 1108


>gi|212550708|ref|YP_002309025.1| DNA polymerase III alpha subunit [Candidatus Azobacteroides
            pseudotrichonymphae genomovar. CFP2]
 gi|212548946|dbj|BAG83614.1| DNA polymerase III alpha subunit [Candidatus Azobacteroides
            pseudotrichonymphae genomovar. CFP2]
          Length = 1229

 Score =  957 bits (2473), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1107 (33%), Positives = 570/1107 (51%), Gaps = 95/1107 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66
             FVHL VHS YS L+G  S+  ++DK    +  A+A+TD  N+F   EF           
Sbjct: 3    PFVHLHVHSYYSQLDGMSSITGLVDKACHYRMKALALTDHGNMFGIKEFYDCIKKKNKNL 62

Query: 67   -----IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
                 I+PI+G +  +  +      ++ K        ++LL    +GY+ L +LVS  ++
Sbjct: 63   HKDQKIKPILGVEAYVARRTRF---DKSKKVDSNGWHLILLAKNKQGYKNLCKLVSISWI 119

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSSQVAEKRLLTFKKLFGD 180
                    RI    L++  +EGLI  +    G I +      ++Q AE+ +L FKK+F +
Sbjct: 120  EG-FYYRPRIDKECLEQY-SEGLIATSACLGGEIPQKILERENTQEAEQAILWFKKVFEN 177

Query: 181  RLYVNLQRHRGYDR-----------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              Y+ LQRH+                    +++LA T +  ++ TN+  F+ EE  EAHD
Sbjct: 178  DFYLELQRHQTNKENSDQTVFLKQTVVNQSLLKLAKTTDTKIICTNDVHFIEEEHAEAHD 237

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             L+ +     ++   R R T   + K+  EM +IFSDLPE+L NTVEIA +         
Sbjct: 238  RLICLGTGKYLNDPKRMRYTKQEWFKSIEEMNAIFSDLPESLGNTVEIADKIEPYNIDLE 297

Query: 290  PILPRFIEKECDDIQKE------------------------------------EENELRN 313
             ++P F   E    ++                                     E + L+ 
Sbjct: 298  TVMPIFSIPESFATEETYCTKYTEETLRQEFNKEDKSRFDKLGGYNKVIRIKLEADYLKE 357

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
              +   + R                +RL+FEL  +  M F GYFLIV DFIQ A+   + 
Sbjct: 358  LTLQKAKNRYGN------PIPNAILERLEFELETMKTMGFPGYFLIVQDFIQAARNMGVS 411

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGSV AY L ITDIDPL++ LLFERFLNPDR+SMPD DIDF  D R +++R+
Sbjct: 412  VGPGRGSVAGSVVAYCLEITDIDPLKYDLLFERFLNPDRISMPDIDIDFDDDGRMDIVRW 471

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ--- 490
            V  KYG E+VA I+T+G++  K+++RDVGR   +  ++ ++L KLIP+      S Q   
Sbjct: 472  VTKKYGKEKVAHIVTYGTMATKSSIRDVGRVQGLSMTETEKLTKLIPDRLPEDESGQIPK 531

Query: 491  -----AIADDSRFREARLADPS-VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                  I   S  RE R ++   +   L+ ++ LEG  R    HA GI+IG   L+  +P
Sbjct: 532  INIKNCIKYISELREVRYSNNKNLSDTLKYAEMLEGTVRQTGIHACGIIIGADDLTNFLP 591

Query: 545  M----YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
            +     +    D+ VTQ+    IE  GLIK DFLGLKTL++++ ++  + + +   +D++
Sbjct: 592  LATVKEKRTNEDILVTQYEGSMIESIGLIKMDFLGLKTLSIIKNTIANVKRSKNKTIDIN 651

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD  TY L +   T+G+FQ ESSGM++ L  ++P   ED+IA+ +LYRPGP+  I 
Sbjct: 652  HIPNDDKLTYELYSRGQTIGVFQFESSGMQKYLRELRPTQFEDLIAMNALYRPGPMAYIP 711

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             + NRK+ K  I+   P ++  LKET G+ +YQEQVM +++ L+G+S  ++D LR+AMGK
Sbjct: 712  DFINRKHEKNSIIYDFPEMESRLKETYGITVYQEQVMLLSRDLAGFSRGQSDELRKAMGK 771

Query: 720  KIKEEMDKQKERFISGASKNGI-SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+K +M++  ++FI GA+KNG   K     I+    KFA+Y FNKSHA  Y+ ISYQTA+
Sbjct: 772  KLKNKMEQFHDKFIQGATKNGFGPKKKLEKIWNDWTKFAEYAFNKSHATCYSWISYQTAY 831

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYY 837
            +K HYP EFLAA++T   DN+ +I KF  + R   I+++ P +N   ++F V     I +
Sbjct: 832  LKVHYPAEFLAANLTHNRDNIVEITKFIDECRAMGIRVLGPDINESELNFTVNKEGHIRF 891

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-G 895
             L  IKGVG      I+ E   +  F ++ DF  R++    N++ +ESL  +G  D F G
Sbjct: 892  GLGGIKGVGKNAVETIVKEREENGAFKNIFDFIERINLTACNKKSIESLSLSGTFDSFIG 951

Query: 896  YSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
              R Q           ++ + +Y    + ++ +   ++F +       K+ +      N+
Sbjct: 952  IKREQFFAENSNGETFIETLIRYGNKFQLDKNSDIGSLFGNSDPMGIAKLEIPLKDEWNN 1011

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR---GNNIRLAAMVVSKQ 1005
              R   E+ +LG Y S HPLD Y  IL+ +      +         G  + L  MV + +
Sbjct: 1012 IERLNKEKDLLGVYVSSHPLDEYYLILKYICTLRINDFEKAKITQCGQELILGGMVTNYR 1071

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T+ GS  G +   +     E   F
Sbjct: 1072 EGHTKAGSSFGILKLEDFTGSREIPLF 1098


>gi|167626567|ref|YP_001677067.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
            philomiragia ATCC 25017]
 gi|167596568|gb|ABZ86566.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
            philomiragia ATCC 25017]
          Length = 1159

 Score =  956 bits (2472), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1042 (37%), Positives = 588/1042 (56%), Gaps = 39/1042 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL++H+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A + G++PI
Sbjct: 2    FSHLRIHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALSNGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSV 129
             G +L ID +               V  +VLL    +GYQ ++ LVS+ Y   D+     
Sbjct: 62   FGVELKIDTEFG-------------VCDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIP 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             I   WL+ I    +I L GG +G + +A         E+ +     +F  D   + + +
Sbjct: 109  LIPKDWLKNINLANVICLNGGQNGELGKAILAKDDIRVEEIISESIAIFGRDNYIIEIHK 168

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                +      + ++LA  H L  VATN ++F+  +DY+ H++   +   T +  + R  
Sbjct: 169  LEYENEGLYNEKALELASKHNLIAVATNLTVFMESDDYDIHEIRACINEKTTILDESRKS 228

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + T + YLK+  EM   FS+LP  LENT+ IA+RC+    +  P LP     +       
Sbjct: 229  KFTREQYLKSADEMYQTFSELPVLLENTLAIAKRCNVTFDLGKPCLPTVDIPDG----LT 284

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVIARMKFSGYFLIVA 361
            E          GL+ RLA+    +     +     Y+ RL  E+++I  M F GYFLIV 
Sbjct: 285  EREYFSKLCYQGLDKRLAKILENRPVDKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVE 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDID
Sbjct: 345  DFIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDID 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC   RD VI+YV+ KYG + V QIIT+G++ AK  +RDV R +   +   DR+ KLIP 
Sbjct: 405  FCIQGRDRVIKYVEQKYGKQSVGQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPE 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P      + + +     +   AD  V  ++E +QKLEGL R    HAAGIVI    +S 
Sbjct: 465  TPGTTFK-KILHEGEPLYDEMQADEEVAEIVEKAQKLEGLPRSLGKHAAGIVISPTVISD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG----VKVD 597
              P+Y + +    VTQF+   +E  GL+KFDFLGLK LT+++ ++  +  +       +D
Sbjct: 524  FAPVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIIKNAIASINAKRSANETPLD 583

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +S IP DD +T+ LL    T+GIFQLES GM+Q ++ +     E+IIALV+LYRPGP++N
Sbjct: 584  ISDIPLDDEKTFKLLQAGKTIGIFQLESQGMQQIVKDLGTSNFEEIIALVALYRPGPMEN 643

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  + +RK+G+++   +HPL++ +L+ET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAM
Sbjct: 644  IPTFVDRKHGRKQTTYLHPLLEEVLRETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAM 703

Query: 718  GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            GKK  EEM++Q++ F  GA+K + I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQT
Sbjct: 704  GKKKPEEMEQQRKIFKEGAAKYHNIEAGLADEIFDQMEAFAGYGFNKSHAAAYALIAYQT 763

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRI 835
            AW+K HYP E++AA M+ +M N +++ KF  DA+   I ++ P+VN    D        I
Sbjct: 764  AWLKAHYPDEYMAALMSGDMGNTDQLVKFILDAKNMGITVLAPNVNKSVYDCIAASKGTI 823

Query: 836  YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               L AIKG+G    + I+ E  A   F S+ D   RVD +K+N++ LE+L FAGA+   
Sbjct: 824  LLGLGAIKGLGGEAIKSILNEREASGEFSSIFDLTRRVDLRKVNKKALEALCFAGAIKDI 883

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVR 951
              +R     S++   K A +V +       ++F   +        LE+       N    
Sbjct: 884  SKNRATAFNSIEKAIKNAGYVNEMAAAGQNDLFGFTEQESDTDTELERECIVEEWNLREL 943

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-ATIRGNNIRLAA-MVVSKQQKKT 1009
              NE++ LG YFSGH +D        +     E+     + GN++R+ A M+    ++KT
Sbjct: 944  LINEKKALGMYFSGHIIDDESHWRNHVSFSDLEKIQKPNMDGNSVRIIASMITPPARRKT 1003

Query: 1010 RKGSRIGWVTFSEPAKEYEANF 1031
            + G  +  +   +     +   
Sbjct: 1004 KTGRVLYIINIDDEFDRADCLV 1025


>gi|332177029|gb|AEE12719.1| DNA polymerase III, alpha subunit [Porphyromonas asaccharolytica DSM
            20707]
          Length = 1272

 Score =  956 bits (2472), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/1115 (30%), Positives = 552/1115 (49%), Gaps = 104/1115 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-------- 62
            +V L VHS YS+L+G   +  ++DK  A   P IA+TD   ++    F+  A        
Sbjct: 18   YVPLHVHSHYSILDGMAPVEKLVDKAVACGMPGIALTDHGAMYGIKNFTNYANDKINGDK 77

Query: 63   -------------------------CAAG---------IQPIIGCQLDIDMQ-------D 81
                                        G          + I+GC++ +  +       D
Sbjct: 78   LAQIKSLRKQIKELEAEASNADEIARIEGEIKTIEQSLFKAIVGCEVYVARRSLELKDKD 137

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 N  ++   +   ++LL    +GY+ LI++VS  +   +     RI    L E   
Sbjct: 138  AKDPDNPTRSIDRSGYHLILLAKNLQGYRNLIKMVSIAWEHGE-YYKPRIDKKLLSE-HH 195

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR------- 194
            EG+I  +    G I +         A K  L +K+ FG+  Y+ +  H   D        
Sbjct: 196  EGIIASSACLGGEIAQHILHGRLDEARKTALWYKETFGEDYYLEIMLHPNSDPLGGQETY 255

Query: 195  ----YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                    +V+++     + ++ATN++ FL+EED EAHD L+ +  ++ +S  +R R T 
Sbjct: 256  HKQLQVAQEVIKMGQELGIKVIATNDTHFLNEEDAEAHDHLICMTTNSPISDPNRMRYTK 315

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              +LK+  EM ++F+D P+ LENT+EI  +  +    HAP++P F   E       E++ 
Sbjct: 316  QEWLKSPEEMTALFADYPDVLENTLEICNKVEYYSIDHAPLMPHFELPEG---FASEDDY 372

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR+    G + R             + ++R+D EL VI  M F GYFL+V DFI  A++ 
Sbjct: 373  LRHLTYEGAKKRYGDPV------PPEVQERIDMELGVIQNMGFPGYFLVVQDFIAAARQL 426

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             + VGPGRGS AGS  AY L+IT I+P+++ LLFERFLNPDR+SMPD DIDF    R  V
Sbjct: 427  GVRVGPGRGSAAGSAVAYCLSITQIEPIKYGLLFERFLNPDRISMPDIDIDFDDKNRWRV 486

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN---DPAHPV 487
            + +V NKYG + V+ IIT  ++  K A++ V R  ++P  Q +RLCKLIP+   +    +
Sbjct: 487  LEWVTNKYGRDHVSNIITLTTMATKGAIKGVARVEELPLDQANRLCKLIPDRAPEGVKHL 546

Query: 488  SLQAI-ADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            +L  +  ++  FREA ++ +  +   +  +++LEG       HA G++I   P+S +VP+
Sbjct: 547  TLDWMVQNNQEFREASVSQNEQLANTIRYARQLEGTASTTGVHACGVIISGPPVSDVVPL 606

Query: 546  YRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
               +  D      V Q+  K IE  GLIK DFLGL+TL+++  +L  +     + +D+  
Sbjct: 607  STAIDPDTNERKLVAQYEGKVIEPTGLIKMDFLGLQTLSIINDALQNIKMSYGIDLDIDT 666

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD +T+ L +   T+G FQ ES GMR+ L+ ++P   +D++A+ +LYRPGP+DNI  
Sbjct: 667  IPVDDPKTFELYSRGDTVGTFQFESPGMRKYLQQLEPTEFKDLVAMNALYRPGPMDNIPT 726

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RK G+++I    P ++P LK+T G+ +YQEQVM ++++L  ++  ++D LR+AMGKK
Sbjct: 727  FIERKLGRQEITYDLPEMEPYLKDTYGITVYQEQVMILSRVLGDFTRGDSDSLRKAMGKK 786

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM K + +F+      G  +     I++   KFA Y FNKSH+  YA ++YQTA++K
Sbjct: 787  KEKEMAKYRIKFVENGVAKGHPRDTLERIYDGWQKFASYAFNKSHSVCYAWVAYQTAYLK 846

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSL 839
             HYP +F+AA +T      +K+ K+ ++ +   +++  P VN     F       I + L
Sbjct: 847  AHYPAQFMAALLTCNQSKSDKLTKYLEEVQHMGLEVKGPDVNESFTAFSANKEGVIRFGL 906

Query: 840  AAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
              I  VG + A  I++   +   +  + DF  R D    +RR LE+L+ +GA D FG  R
Sbjct: 907  GGISHVGLSVAEAIIQEREEHGAYQDVYDFFQRTDLSNCSRRALEALILSGAFDNFGIER 966

Query: 899  MQLLQ-----------------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
                                   L  + +Y + +E  RT    ++F     +      L 
Sbjct: 967  EVYFAPIAKSGVSSLSYGKDETFLTALMQYGKILESERTQVQASLFGDSDPSVKLPKPLP 1026

Query: 942  K--FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIRGNNIRL 997
                   +   R   EQ  +G Y S HPLD Y  I+  +      E    A +    +  
Sbjct: 1027 PKDVEPWSHLERLTKEQTYIGMYLSAHPLDPYAFIIEYLCNCPASELDQFAELGLTQLTC 1086

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A +V   +Q  +++      +   + +   E   F
Sbjct: 1087 AGLVTKVRQGISKRNEPYAIIQIEDTSGTGEIPLF 1121


>gi|149177980|ref|ZP_01856577.1| DNA polymerase III alpha subunit [Planctomyces maris DSM 8797]
 gi|148843173|gb|EDL57539.1| DNA polymerase III alpha subunit [Planctomyces maris DSM 8797]
          Length = 1154

 Score =  956 bits (2471), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1027 (35%), Positives = 564/1027 (54%), Gaps = 32/1027 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L+GA  +  ++ K+      ++AITD  NL+ A++F Q   +  + PI+G +  I  + 
Sbjct: 1    MLDGASRIPEMVSKVKEAGMNSLAITDHGNLYGAMDFYQHCRSQDVNPILGLEAYIAPRS 60

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
              +              + LL    +G++ LI+L S  YL        RI    L E  +
Sbjct: 61   RFEKG--ASRMKEASFHLTLLAQNRQGFENLIKLSSASYLEG-FYYKPRIDKEIL-EAHS 116

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQV 200
            EGLI+LTG ++G +         + AEK    ++K+FGDR+Y+ +Q       R      
Sbjct: 117  EGLILLTGCAAGELSHHILGEDWEEAEKLCAWYEKVFGDRVYMEIQNAGLEIQRQCLEGT 176

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL-KNRSE 259
            V LA    LPLVATN++ ++ ++D EA DVL+ V+   VVS + R ++T D +  + + E
Sbjct: 177  VDLANRMGLPLVATNDAHYVDQKDAEAQDVLLCVSTRAVVSDEKRMKMTGDQFFVRTQDE 236

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M + F  L +A+  T E+A R    +                D Q      LR      L
Sbjct: 237  MYNAFPGLEDAVARTQELAERVDIQMSDKKFYPVFQPPDNLTDTQ-----YLRKLCEERL 291

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
             ++            Q +  RLD EL VI +M +S YFLIV DF+Q+A+   IP    RG
Sbjct: 292  PIKYGDEL------TQAHWDRLDLELGVIEQMGYSSYFLIVWDFVQFAENEGIPC-TARG 344

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            S  G++ A+ L ++ + PL++ LLFERFL+P R   PD DIDFC+DRR  VI Y + KYG
Sbjct: 345  SACGAIVAFLLGMSQVCPLKYDLLFERFLDPSRTEPPDIDIDFCRDRRQLVIDYTKQKYG 404

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + VAQI TFG+L+AKAA+RDVGRAL +P ++V+ + K+IP      +   A+ +    +
Sbjct: 405  EKSVAQIGTFGTLKAKAAIRDVGRALGVPLARVNEIAKMIPESLGIKLK-DALKESPDLQ 463

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
             A   D  + RLL+++ +LEGL R A THAAG+V+ D PLS++VP+         +TQ++
Sbjct: 464  SAYDQDSEIKRLLDLAMQLEGLCRSAGTHAAGVVVADLPLSEVVPLQSITGKTDIITQWD 523

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTL 618
               +E  GL+K DFLGL+ LT+L K++  + + RG+ ++   +P DD ET+ LL    T 
Sbjct: 524  GPTVESVGLLKMDFLGLRNLTILDKAVQNVKKHRGIDINPHKLPLDDQETFELLQRGETK 583

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP 676
            GIFQLES GMR  L  M+PD  EDIIA  +LYRPGP++  +V  Y + KN +  I  +HP
Sbjct: 584  GIFQLESGGMRDLLTKMKPDKFEDIIATSALYRPGPLEGGMVMQYVDVKNNRIPIPKVHP 643

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            ++D +L ET GV++YQEQVM+I   + G  LS A    +A+ KK  + +   +++++ GA
Sbjct: 644  IVDEILDETYGVMVYQEQVMRILNRVGGIELSAAYRCIKAISKKKLKIIADFRDQYLEGA 703

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             K+G+   +A ++FE++ KFA YGFNKSH+ AY  ++Y TA++K HYP EF+AA ++  M
Sbjct: 704  KKSGVDVKLATDLFEMIEKFAGYGFNKSHSTAYGGVAYATAYLKAHYPKEFMAALLSCGM 763

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-E 855
            ++ E+I +   D R+  I+++PP +N   V+F V   +I + + AIKGVG      ++ E
Sbjct: 764  ESHERITEHVDDCRRMKIEVLPPDINRSEVEFSVDGEKIRFGMGAIKGVGEQVLEAVVKE 823

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
               + PF SL + C RVD K LN+  LE+L+ AGAL+  G ++ QL+ +++   + A  +
Sbjct: 824  REENGPFTSLYNLCERVDPKTLNKSTLETLIKAGALNSLGGNQAQLMLTVERAVQSALNI 883

Query: 916  EKNRTNKHENIFA----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             ++R    +++F      E+    ++ +L +      + +   E+ V GFY + HPL   
Sbjct: 884  HRDRARGQKSLFGDETVDEETGAEEEASLPEAEDWPRAQKLGAEKEVFGFYLTSHPLAEM 943

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ----QKKTRKGS-RIGWVTFSEPAKE 1026
               L K       E         + LA MV S +    +K ++ G+ R       +P   
Sbjct: 944  GTSLTKYAQNQTNELAEMDDRVEVILAGMVSSIKMAATKKPSKNGNTRYVNFDLEDPHGL 1003

Query: 1027 YEANFFP 1033
                 +P
Sbjct: 1004 VRCIMWP 1010


>gi|205374532|ref|ZP_03227328.1| DNA polymerase III DnaE [Bacillus coahuilensis m4-4]
          Length = 1115

 Score =  956 bits (2471), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1028 (37%), Positives = 606/1028 (58%), Gaps = 43/1028 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQV S+YSLLE  +S+  ++ K  +D    +A+TD N ++  + F Q+   AGIQP
Sbjct: 2    SFVHLQVWSAYSLLESTISIEKLVQKAKSDGYTHLALTDKNVMYGVIPFYQECRKAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG   DI   D             T+  +VLL  T  GY+ L+++ S +    Q K   
Sbjct: 62   IIGVTADILHDD------------DTIHPLVLLAETERGYRNLMKISSVI----QTKPEG 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
             I   WL+    EGLI +T G  G I+      + + A+K + ++  +F     Y+++Q 
Sbjct: 106  AIPFKWLKGY-KEGLIAITPGEDGKIEDELTNGAVEAAKKTIYSYLSIFSSHNFYLSIQW 164

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +    +S++ QL      P++ ++   +L++E+  A + L+A+     +S+ DR  +
Sbjct: 165  QTTH---IQSELKQLGKETSTPILCSHPVRYLTKEEAFAQECLLAIRDGKKLSEDDRTIL 221

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + ++  K+ SEMV +FS     L+NTV +A+RC   + +   +LP++  KE        
Sbjct: 222  PSNEYDFKSPSEMVELFSTEWGCLQNTVSVAKRCHIEIPLQQSLLPKYPLKEG----TSP 277

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + L +    GL+ R+        YH   Y +RL +EL++I  M+F  YFLIV DF+++A
Sbjct: 278  IDALSSLCKKGLKERVP-------YHHHTYVERLQYELSIIENMQFEDYFLIVWDFMKYA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++++I  GPGRGS AGS+ AY L ITD+DP+   LLFERFLNP+R+SMPD DIDF   RR
Sbjct: 331  REHDIVTGPGRGSAAGSLVAYVLHITDVDPIEHHLLFERFLNPERVSMPDIDIDFPDHRR 390

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI+YV++KYG   VAQI+TFG+   KAALRDV R+      +++RL +++P  P   +
Sbjct: 391  DEVIQYVKDKYGELHVAQIVTFGTYGVKAALRDVARSFGFNTKEMERLSRMVPTTPGTTL 450

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             ++A  +  + +E         +L + +  LEGL RH STHAAG+VI +RPL  +VP+  
Sbjct: 451  -VKAYRESKQLQEFIKESDLHQKLYKTAVLLEGLPRHTSTHAAGVVISERPLVDIVPIQT 509

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606
                 + +TQ++M  +E+ GL+K DFLGL+ LT+L++ +  + +    +  L  I  +D 
Sbjct: 510  GSN-GIYLTQYSMTVLEEIGLLKMDFLGLRNLTILEQLVKTINRYSKEEFKLDQIDQNDS 568

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T+ LL+   T GIFQLES GMR+ L  ++P   EDI+A+ +LYRPGP++NI  Y  RK+
Sbjct: 569  KTFELLSKGDTSGIFQLESEGMRKVLLSLKPSGFEDIVAVNALYRPGPMENIPDYVERKH 628

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G++ I SIHP ID +L  T+GVI+YQEQ+MQIA +++G+SL EAD+LRRA+ KK  + + 
Sbjct: 629  GRKPIPSIHPDIDSILNVTKGVIVYQEQIMQIASVMAGFSLGEADLLRRAVSKKKADVLQ 688

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K++E F+ GA+  G    +A  +++L+ KFA+YGFN+SHA AY++ISYQ A++K H+P  
Sbjct: 689  KEREHFVQGATAKGYPVKLANEVYDLIVKFANYGFNRSHAVAYSMISYQLAYIKAHFPSY 748

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            FLAA +T  + N +K+  +  +AR+ NI +  PS+N     F    N I YSL AI+GVG
Sbjct: 749  FLAALLTSVIGNEDKVAAYIHEARKKNIDLFSPSINRSYYSFFATKNGITYSLGAIRGVG 808

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                + I+ A  +KPF+ L DFC RVDSK +NR+ +ESL++AGALD F   R  LL SLD
Sbjct: 809  VKAYQEILRARNEKPFEDLMDFCLRVDSKVVNRKTIESLIYAGALDEFKKDRAVLLASLD 868

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                ++  ++   ++    +F  E      +    +     + ++ + E+ VLG Y S H
Sbjct: 869  AALDHSDLLKPKGSD--FALFDEEDMLLL-RPKYVEIEPMPTDIKLQYEREVLGIYLSDH 925

Query: 967  PLDVYKPILRKMGIKGYEES-VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            PL  ++ + R++G     ++ +     ++I     +   +  +T+KG  + +V  ++   
Sbjct: 926  PLRQFEGLQRRIGALPLSDTPIGKKEHDHIV---YLSEVKPIRTKKGDVMAFVKLTDQTG 982

Query: 1026 EYEANFFP 1033
            E +   FP
Sbjct: 983  EVDGVVFP 990


>gi|303237320|ref|ZP_07323890.1| DNA polymerase III, alpha subunit [Prevotella disiens FB035-09AN]
 gi|302482707|gb|EFL45732.1| DNA polymerase III, alpha subunit [Prevotella disiens FB035-09AN]
          Length = 1238

 Score =  956 bits (2471), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1120 (31%), Positives = 544/1120 (48%), Gaps = 107/1120 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------ 63
             ++HL VH+ YS+L+G   +  ++DK   +    +AITD   +F   EFS          
Sbjct: 3    DYIHLHVHTHYSILDGQSKVPYLVDKAIKNGMKGMAITDHGVMFGIKEFSDYCASINKQR 62

Query: 64   ----AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                    +PI GC++ +      K     +    +   +++L     GY+ LI+LVSR 
Sbjct: 63   KKNGEEPFKPIFGCEMYVAR--RRKEDKVKEMHDNSGYHLIVLAKNYTGYKNLIKLVSRS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++ D      R     L++   EGLI+ T   +G + R       + A++ +  +KK+FG
Sbjct: 121  WV-DGYYYRPRTDREDLEKYH-EGLIVSTACLAGEVPRNIMRGDIEGAKEAVQWYKKVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     ++QL     +  + TN+  F  +E  E
Sbjct: 179  DDFYLELQRHEVKDPTLKANREAFPLQQKVNHVLLQLGKEFGVKCICTNDCHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    ++   R R +   + K R EM  +F DLPE L NT+EI  +  F   
Sbjct: 239  AHDHLLCLSTQEDLNSPTRMRYSKQEWFKTREEMNEVFQDLPEVLSNTIEILEKVEFYSI 298

Query: 287  VHAPILPRFIEKECDDIQKE---------------------------------------- 306
             + PI+P F   E    ++E                                        
Sbjct: 299  DNGPIMPFFPIPENFGTEEEWRKKFTEQQLYDEFTTDEHGENQLSPEEGEAVIKRLGGYE 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L   A  G +               D  + + FEL+V+  M F GYFLI
Sbjct: 359  KMYRIKFEADYLAKLAHDGAKKLYGD------PIPDDVEKAIIFELHVMKTMGFPGYFLI 412

Query: 360  VADFIQWAK-KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A+ + N+ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD 
Sbjct: 413  VQDFINAARTELNVMVGPGRGSAAGSVVAYCLGITRIDPLKYDLLFERFLNPDRVNLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R +V+++V  KYG E  A IIT+ ++  K +++DV R   +P    + LCK 
Sbjct: 473  DTDFDDDGRGKVLQWVMEKYGPENCAHIITYSTMATKNSIKDVARVEGLPLDVSNNLCKA 532

Query: 479  IPNDP--AHPVSLQ-AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP        ++L+ AIA   R +EA ++ D      ++ ++ LEG  R    HA G +I
Sbjct: 533  IPERLPDGMKMNLKNAIACTPRLQEAEVSEDDRERNTIKYAKMLEGTVRGTGIHACGFII 592

Query: 535  GDRPLSQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+S+ VP+      D     +PVTQ++   IE  GLIK DFLGLKTL+ ++++   +
Sbjct: 593  CRNPISEWVPVSTATDPDFPDQKVPVTQYDGHVIETTGLIKMDFLGLKTLSEIKEACKVI 652

Query: 590  AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q     VD+  IP DD  TY L     T+G FQ ES GM++ L  + P   ED+IA+ +
Sbjct: 653  KQTTGDIVDIDNIPIDDELTYQLYQKGQTIGTFQFESPGMQKYLRELHPTVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK+    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPDFIKRKHDPSLVTYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E+D LR+AMGKK K  +D+ K +F+    +NG    I   I+    KFA Y FNKSHA  
Sbjct: 773  ESDALRKAMGKKKKAIVDQMKPKFLKQGQENGHDPKILEKIWTDWEKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ ++YQTA++K HYP EF+AA MT     + +I K  ++ +   I  + P VN   + F
Sbjct: 833  YSWVAYQTAYLKAHYPAEFMAALMTRRFSQITEITKLMEECKSLKISTLGPDVNESMMGF 892

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V     I + L+AIKG+GT  A  I+ E   + P+ S+ DF  R+D   +NR+  ESL 
Sbjct: 893  GVNKKGEIRFGLSAIKGMGTGAAIAIVKEREKNGPYKSIYDFAERIDLSNVNRKAFESLA 952

Query: 887  FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            ++G  D F   R             LD + +YAQ  ++ + +   ++F  +      +  
Sbjct: 953  YSGGFDSFELQREDYFSVTSKGVMFLDALVRYAQLYQQEKASMQNSLFGGDDEVEIARPV 1012

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE------SVATIRGN 993
              K     S  +   E+ ++G Y S HPLD Y  IL  +     EE           +  
Sbjct: 1013 AAKNERWPSIEKLNKERELVGIYLSAHPLDEYSVILNHLCNTHTEEIGRGADLAELSKRE 1072

Query: 994  NIRLAAMVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032
             I    ++ +  ++ + + G   G+VT  +     E   F
Sbjct: 1073 EISFGGIITAVNERFSQKTGKPFGFVTIEDFEGSGELALF 1112


>gi|294501515|ref|YP_003565215.1| DNA polymerase III subunit alpha [Bacillus megaterium QM B1551]
 gi|294351452|gb|ADE71781.1| DNA polymerase III, alpha subunit [Bacillus megaterium QM B1551]
          Length = 1118

 Score =  955 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1011 (36%), Positives = 581/1011 (57%), Gaps = 39/1011 (3%)

Query: 27   LSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMT 86
            + ++ +++        AIA+TD N ++  + F +    AGI+PII           L ++
Sbjct: 19   VRIHELVETAKKMNYEAIALTDENVMYGVIPFYKACVKAGIKPII----------GLTLS 68

Query: 87   NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146
                        +VLL    +GY+ L++L S +    Q K+   +   WL    + GLI 
Sbjct: 69   ILEHEESERAYPLVLLAENDKGYENLLKLSSLV----QTKEKHGVNKKWLHHY-SGGLIA 123

Query: 147  LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYT 206
            +T G +G I+     N  Q A++ L  FKK++   LY+++QRH   + +   Q+ +LA  
Sbjct: 124  ITPGVTGEIETLLAENKLQDAKQVLQFFKKVYSQSLYISIQRHGQDEAFINQQLTELAAE 183

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV---VSQKDRPRVTPDHYLKNRSEMVSI 263
              +PLVATN   +L +ED +A++ L A+           ++    + ++Y K+  EM  +
Sbjct: 184  ENIPLVATNQVKYLKKEDRDAYECLAAIRDGEKLHSDEDEEVKSKSSEYYFKSPDEMEDL 243

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            F D    +E +++IARRC   + +    +P++               LR     GL+ R 
Sbjct: 244  FHDQHFLIEESIKIARRCELEISLGVMSIPKYPVPP----SVTSSAYLRTLCEKGLQERF 299

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                       + Y +RLD+ELN+I  M+FS YFLIV DF+ +A ++ I  GPGRGS AG
Sbjct: 300  -------QVITEQYEERLDYELNIIENMRFSDYFLIVWDFMNYAHEHGILTGPGRGSAAG 352

Query: 384  SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            S+ +YAL IT++DP++  LLFERFLNP+R+SMPD DIDF  ++RD+VI+YV  KYG   V
Sbjct: 353  SLVSYALRITNVDPIQHQLLFERFLNPERISMPDIDIDFPDNKRDQVIQYVTQKYGALHV 412

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
            AQIITFG+L AKAA+RDVGR +      ++++ K IP  P   +   A+ D    ++   
Sbjct: 413  AQIITFGTLAAKAAVRDVGRVMGFDQEALNKMSKAIPTKPGTTLK-SALRDSRVLQDYLS 471

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563
             + +  +   I+ K+EGL RH STHAAG+VI ++PL+Q V +  +   D+ +TQ+ M+ +
Sbjct: 472  ENEARKQWYNIAMKIEGLPRHTSTHAAGVVISEKPLTQSVAVQ-EGHDDVYLTQYPMEAL 530

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQ 622
            +  GL+K DFLGL+ LT+L   L  + +   +   LS IPF+D +T+ LL+   T GIFQ
Sbjct: 531  QDVGLLKMDFLGLRNLTILDHILKKIERDMNRKLSLSHIPFNDQKTFELLSKGDTTGIFQ 590

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
            LES GMR+ L+ ++P  +EDI+A+ +LYRPGP++NI  Y  RK+G EK++  HP +  +L
Sbjct: 591  LESDGMRRVLQQLKPTELEDIVAVNALYRPGPMENIPTYIKRKHGVEKVIYDHPTLKDIL 650

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            + T GVI+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +  +D+++  FI G+ K G  
Sbjct: 651  QSTHGVIVYQEQIMQIASKMAGFSLGEADLLRRAVSKKERAVLDRERAHFIQGSKKKGYD 710

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
             ++A  +++L+ +FADYGFN+SHA AY++++YQ A++K HYP++F +A +T  + N  KI
Sbjct: 711  LSVANRVYDLIVRFADYGFNRSHAVAYSMVAYQLAYLKAHYPLQFFSALLTSVIGNEGKI 770

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
             ++  + ++  IQ++PPS+N     F V    I YSLAAIK +G    + I E    K F
Sbjct: 771  AQYINELKRKKIQVLPPSINKSMYSFNVEGESIRYSLAAIKHIGAAAMQEITEERKKKRF 830

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
            + L DFC+RV  K +N++ LE+L+ +G  D FG +R  LL ++D   ++A  V  +    
Sbjct: 831  EDLFDFCARVSQKAVNKKALEALILSGGFDEFGENRATLLATIDVAFEHASLVLPDDDFG 890

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
                F  E       +  E+  +E+   R + E+ +LGFY S HP   Y+ +     +  
Sbjct: 891  ----FGAEFSLKPKYMEKEELKIED---RLQYEKDMLGFYLSSHPASQYEALNSFYSVVS 943

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +      G  + L   V+  +  +T+KG ++ ++  ++ + E E   FP
Sbjct: 944  LHDMKEYASGKAVSLLVFVLEIRVIRTKKGEQMAFLRITDESGEGEVVAFP 994


>gi|284035464|ref|YP_003385394.1| DNA polymerase III subunit alpha [Spirosoma linguale DSM 74]
 gi|283814757|gb|ADB36595.1| DNA polymerase III, alpha subunit [Spirosoma linguale DSM 74]
          Length = 1205

 Score =  955 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/1088 (32%), Positives = 553/1088 (50%), Gaps = 77/1088 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL  H+ YSLL+G   +  ++ K  AD  PA+AITD  N+F   EF  +A   GI+PI
Sbjct: 3    FSHLHCHTQYSLLDGQADIKKLIKKAKADNMPAVAITDHGNMFGVFEFVAEASKQGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+  +    + K     K         +LL   A+GY+ L +L S  Y+     +  R
Sbjct: 63   VGCEFYVVEDHHKKQFT--KEQKDVRYHQLLLAKNAQGYKNLAKLCSLGYMEGLYGKYPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    + +   EGLI  T      + +       +  E     +   FG+  YV LQRH 
Sbjct: 121  VTKELIDQY-KEGLIASTCCIGASVPKTILKKGEEAGEIEFKWWLDRFGEDYYVELQRHE 179

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK------ 243
              D+ + ++ +++ A  + + ++A+N+S ++ ++D+ AHD+L+ V  +   S        
Sbjct: 180  IPDQIKANEVLIKFARKYNVKIIASNDSHYVDQDDWVAHDILLCVNTNEKQSTPSMKDFS 239

Query: 244  ---------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                          +   Y KN  EM ++F DLPEA++NT EI  +   +      +LP 
Sbjct: 240  DDDVMPKNTRFAFFSDQFYFKNTQEMTTLFKDLPEAIDNTNEIVGKVETLKLKRDIMLPN 299

Query: 295  FIEKE----CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            F   +      D    +   LR+    G + R               ++RLDFEL  I  
Sbjct: 300  FPIPKEFQQHTDDVLNQWEYLRHLTYEGAKERYVDIL-------PHIQERLDFELFTIRT 352

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F+GYFLIVADFI+  +   + +GPGRGS AGS  AY   IT+IDP+++ LLFERFLNP
Sbjct: 353  MGFAGYFLIVADFIKAGRDLGVMIGPGRGSAAGSAVAYCTGITNIDPIKYDLLFERFLNP 412

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            DR SMPD D DF  + R +VI YV  KYG  +VAQI+T+G++ +K++++DV R + +P  
Sbjct: 413  DRKSMPDIDTDFDDEGRQKVIDYVVQKYGKAQVAQIVTYGTMASKSSIKDVARVMDLPLQ 472

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDS--------------------RFREARLAD----- 505
              + + KL+P+ P + ++L+ I +D                     R R     D     
Sbjct: 473  DANAVVKLVPDKPTYNMTLKRIFEDPIDGPGGLSSVIQPDEVENVKRMRALEAGDKSAAQ 532

Query: 506  -------PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
                     V  +L+ ++KLEG  R+   HAAGI+I    LS +VP+     ++L +TQ+
Sbjct: 533  AMRIVDFEKVSAVLKQARKLEGTVRNTGLHAAGIIIAPSDLSDIVPVSTSKDTNLIITQY 592

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGT 617
              K IE AG+IK DFLGL+ LT++++ L  + Q   V + +  IP DD ETY L     T
Sbjct: 593  EGKVIEDAGVIKMDFLGLRNLTIIKECLRLIKQNHDVTIAIDDIPLDDEETYKLFQRGET 652

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
              +FQ ES GM++ ++ ++PD   D+IA+ +LYRPGPI  I  Y NRK+G+E++    P 
Sbjct: 653  NAVFQFESDGMKKHMKDLKPDRFGDLIAMNALYRPGPIAYIPNYINRKHGREEVKYDMPE 712

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  L +T G+ +YQEQ+M ++Q L  ++  +ADVLR+AMGKK K  +DK K +F+ G +
Sbjct: 713  MEEYLADTYGITVYQEQLMLLSQKLGNFTKGDADVLRKAMGKKDKATLDKMKGKFMDGCA 772

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             N +   +   ++     FA Y FNKSH+  YA ++YQTA++K HY  E++AA +T  + 
Sbjct: 773  ANNLPLKVCEKVWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYTSEYMAAVLTSCLG 832

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEA 856
             ++KI  F ++ +   + ++ P VN     F V     I + L  IKG G      I+E 
Sbjct: 833  TIDKITFFMEECKNLGLPLLGPDVNESERFFGVNKKGEIRFGLGGIKGAGDAAVEAIIEE 892

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS--------LD 906
              A  P+  + DF  RV+ + +N++  ESL +AGA D    Y R Q  +         LD
Sbjct: 893  RKAGGPYKDIFDFAVRVNLRTVNKKTWESLAYAGAFDSIDEYHRAQYFEMAEGDTSPFLD 952

Query: 907  NIQKYAQWVEKNRTNKHENIFAHE--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
             + +YA      +    +++F           +      +  N   + + E+ V+GFY +
Sbjct: 953  KVIRYANNYHAEKAAAQQSLFGAMMNGEPMIARPKPPIVTEWNQIEKLKYEKDVVGFYIT 1012

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            GHPLD +K  L        ++   T +   I++A +V S Q K  + G+        +  
Sbjct: 1013 GHPLDEFKLELDGFCNCTLDKIYETRQP-EIKVAGIVSSMQTKIAKNGNPFCIFKIEDYN 1071

Query: 1025 KEYEANFF 1032
               E   F
Sbjct: 1072 TSIELALF 1079


>gi|284045058|ref|YP_003395398.1| DNA polymerase III subunit alpha [Conexibacter woesei DSM 14684]
 gi|283949279|gb|ADB52023.1| DNA polymerase III, alpha subunit [Conexibacter woesei DSM 14684]
          Length = 1178

 Score =  955 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1046 (33%), Positives = 556/1046 (53%), Gaps = 42/1046 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL VHS YSLL+GA  ++ +  + AA  QPA+ +TD   +  ++E  +      I+P++
Sbjct: 10   AHLHVHSEYSLLDGACKIDALAARAAAFDQPALGLTDHGVMNGSVEMYKACKKHDIKPLL 69

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC++ +    + +     +        + LL     GY+ L++L S  YL    +    +
Sbjct: 70   GCEVYVVDDRHFRAGRAERN------HLTLLAQNDVGYRNLVKLSSTGYLEGLHRGKPGV 123

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRHR 190
                +    +EG+I LTG  +    +    +    A   +     +F  +++Y  +Q++ 
Sbjct: 124  DFE-IMSQHSEGIIALTGCLASRFCQRLVNDRPDEARAHVDDLMNIFGREQVYFEVQKNG 182

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D+ +    +V++A     PLV T +  +L  EDY  H  L+ V   + +++      T
Sbjct: 183  IADQDKANEGIVRIAREVGRPLVGTGDVHYLRREDYHHHTALLCVQTKSTLAEPKMTFDT 242

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + YLK+  EM   F++ P+AL  T+E+A RC   + +   ++P +     +    EE  
Sbjct: 243  NEFYLKSNQEMADAFAEWPDALPTTLEVAERCQVEIPLGGQLIPSYPTPNGE----EERA 298

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR   + GL +R      A         +R++ EL VI +M F+ YFLIV DF++++K+
Sbjct: 299  YLRQLVLDGLHLRYGNPPPAAAV------ERMEMELAVIDKMGFNAYFLIVWDFVRYSKE 352

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N + VGPGRGS AGS+ AY L ITD+DPL + LLFERFLNP+R+SMPD DIDF    R+ 
Sbjct: 353  NGVAVGPGRGSAAGSIVAYCLAITDVDPLAYDLLFERFLNPERVSMPDIDIDFSVRGRER 412

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVS 488
            VIRYV  KYG E VAQIITFG +  +AA RD  R L   Y   D+L KLIP+     P S
Sbjct: 413  VIRYVTEKYGRESVAQIITFGKMFPRAATRDAARVLGHDYGAGDKLAKLIPDPIMGRPPS 472

Query: 489  LQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY- 546
                       R    ++P   +++++++ LEG+ R++S HAA +VI DRPL+ +VP+  
Sbjct: 473  FDDCLQPGEPLRGEVDSNPVSRQIVDVARGLEGIVRNSSIHAAAVVIADRPLTDIVPLQL 532

Query: 547  ----RDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
                 D R D     VTQ++MK +E+ GL+K DFLGL+ L +++ +LD + +  G + D+
Sbjct: 533  ADAGTDDRGDKVYRTVTQYSMKPVEELGLLKMDFLGLRNLDVIEDALDIIERSTGTRPDM 592

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD +TY ++    ++G+FQ ES GMR+ L+ ++P  +ED+IAL +LYRPG +D I
Sbjct: 593  TTLPLDDGKTYDMIARGDSVGVFQFESEGMRETLKKVRPTELEDLIALNALYRPGAMDQI 652

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y   K   E I      + P+L+ T GVI+YQEQ MQIA+ L+G+S ++AD LR+A+G
Sbjct: 653  PTYARGKRNPESISYPDERLRPILESTNGVIVYQEQAMQIAKSLAGFSGAKADDLRKAIG 712

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK +  M + K  FI G   +  S+ +   ++    K ADY FNK+HAA YA+I+Y+TAW
Sbjct: 713  KKNRAAMAELKPEFIEGCRASRTSEQVIEWLWATNEKSADYSFNKAHAACYALIAYRTAW 772

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K ++P E++AA ++  MD  +K+  F     Q  I+I+PP VN    DF V D  I + 
Sbjct: 773  LKANHPAEYMAALISSVMDTKDKVPFFVAQTEQMGIEILPPDVNESDHDFMVVDGNIRFG 832

Query: 839  LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L A+KGVG      I  A   D PF SL DFC RVD K +N++ +E+L+  GA    G S
Sbjct: 833  LDAVKGVGYAAVEGIKRAREEDGPFTSLWDFCERVDGKAVNKKAIEALIKCGAFSSTGAS 892

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-----------FSDKITLEKFSVE 946
            R  +L  L+  Q   Q  +++      +IF                  +           
Sbjct: 893  RKGMLGVLEQAQAAGQKAQQDALIGQGSIFDLGPEPGAANGAAASAFAAPSHPGIPAEEF 952

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            + +     E+  +G + S HPL   +  +R        E      G+ + +  ++   ++
Sbjct: 953  DQAEMLAAEKESIGLFISAHPLKAVREAMRVKVDCTLAELSDRKDGDWVTVGGIITQCKR 1012

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +T++G  + + T  +     E   F
Sbjct: 1013 LRTKRGDHMMFATLDDLEGTVEILIF 1038


>gi|149181134|ref|ZP_01859634.1| DNA polymerase III subunit alpha [Bacillus sp. SG-1]
 gi|148851221|gb|EDL65371.1| DNA polymerase III subunit alpha [Bacillus sp. SG-1]
          Length = 1081

 Score =  955 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/995 (38%), Positives = 589/995 (59%), Gaps = 41/995 (4%)

Query: 44   IAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
            +AITD N ++  + F Q+     I+PIIG   D+       M+ + +  FP    +VLL 
Sbjct: 1    MAITDRNVMYGVIPFYQECRKNNIKPIIGMTADV-------MSEREERSFP----LVLLA 49

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
                GYQ L+++ S +      K    I   WL+  G EGLI +T G  G I++      
Sbjct: 50   KNNAGYQNLLKISSVIGT----KSPEGIPYKWLKGYG-EGLIGITPGGKGEIEQHLLAGD 104

Query: 164  SQVAEKRLLTFKKLFGDR-LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLS 221
               AE  +   +++FG+   +++LQ H    DR  E  + +L     +  V TN+  F+ 
Sbjct: 105  INQAEDVVHRMQQVFGEESFFLSLQNHGLEDDRKIEDGIEKLKQKLSIRQVVTNDVQFVE 164

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARR 280
            +ED  AH+ L+A+     ++  DR  +  D Y  K+R EM+ +F    +ALENT+++A +
Sbjct: 165  KEDAFAHECLLAIRDGVKLADDDREILPNDQYYFKSRDEMLDLFGSHVDALENTMKVANQ 224

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            C+  +  +  +LP++     +    E +  L    + GL+ R  +          DY  R
Sbjct: 225  CNVEIAFNQNLLPKYPLPAGE----EADQYLHGVCMQGLKERGLENI-------PDYLDR 273

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L++EL VI +M FS YFLIV DF+++AK  +I  GPGRGS AGS+ AYAL ITD+DP++ 
Sbjct: 274  LEYELTVIQKMNFSDYFLIVWDFMKYAKDQHILTGPGRGSAAGSLVAYALRITDVDPIKH 333

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNP+R+SMPD DIDF   RR+EVI YV  KYG   VAQIITFG+L AKAALRD
Sbjct: 334  GLLFERFLNPERISMPDIDIDFPDYRREEVIEYVHKKYGDLHVAQIITFGTLAAKAALRD 393

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS-RFREARLADPSVDRLLEISQKLE 519
              R       ++++L K IP+ P    SL+++ D+S  FR          RL + + KLE
Sbjct: 394  TARVFGFNSKELEQLSKFIPSRPG---SLKSVYDESADFRNFINESQHKQRLFQTALKLE 450

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL RHASTHAAG++I +RPL  L+P+    + ++ +TQ+ M+ +E+ GL+K DFLGL+ L
Sbjct: 451  GLPRHASTHAAGVIISERPLVDLIPIQ-AGQGNVHLTQYPMEILEEIGLLKMDFLGLRNL 509

Query: 580  TLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T+L + +  + +  G ++ L  +P +D +T+ LL+   T G+FQLES GM+  L  ++P+
Sbjct: 510  TILDRIVASIRKGTGKRLSLDDLPQNDEKTFDLLSQGRTDGVFQLESDGMKNVLVKLRPN 569

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
              EDI+A+ +L+RPGP++NI ++ +RK+G+E I   HP +  +L  T GVI+YQEQ+MQI
Sbjct: 570  SFEDIVAVNALFRPGPMENIPLFISRKHGEETIEYPHPDLKEILGVTYGVIVYQEQIMQI 629

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            A  ++G+SL EAD+LRRA+ KK +E +D +++ FI GA   G S   A  I++L+ +FA+
Sbjct: 630  ASKMAGFSLGEADLLRRAVSKKKREVLDSERKHFIDGALNKGYSFETAQEIYDLIVRFAN 689

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGFN+SHA AY++I+YQ A++K +YP  FLAA +T  + N  K+ ++ ++A+Q +I I+P
Sbjct: 690  YGFNRSHAVAYSMIAYQLAYLKANYPSYFLAALLTSVIGNDTKVSQYIREAKQNDINILP 749

Query: 819  PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
            PS+N     FKV    I YSL A++GVG    + I +   +KPF  L DFC RV  K +N
Sbjct: 750  PSINLSQFPFKVEKGGIRYSLGAVRGVGAAALKEIYQERQEKPFVDLFDFCLRVSLKAVN 809

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            R+ LE+LVF+GALD FG  R  LL SLD   ++++ V     +   ++F  E+  F  K 
Sbjct: 810  RKTLEALVFSGALDDFGVDRSTLLASLDVALEHSELVRPQDQD--YDLFQEEEAFFL-KP 866

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
               +        + E E++VLG Y S HP+  ++ + + +      +  A     NIR+ 
Sbjct: 867  KYTEVEDMPLEKKLEYEKQVLGLYLSDHPVSPFESLFKNVSAIDLFDLEAG--NKNIRVG 924

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + + +  +T+KG  + ++T S+ + E E   FP
Sbjct: 925  VYLTAVKTIRTKKGEVMAFITMSDSSGEMEGVIFP 959


>gi|298483654|ref|ZP_07001829.1| DNA polymerase III, alpha subunit [Bacteroides sp. D22]
 gi|298270224|gb|EFI11810.1| DNA polymerase III, alpha subunit [Bacteroides sp. D22]
          Length = 1268

 Score =  955 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1142 (31%), Positives = 572/1142 (50%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMQNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +P+IGC++ +       
Sbjct: 63   KGEVKDLKKRIAGIEAGTIECADKEAEIAACKAKIVEAENKLFKPVIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDLKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ----- 199
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+        +     
Sbjct: 178  IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237

Query: 200  ------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A    + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKYLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE------ 307
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++        
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357

Query: 308  -------------------------------ENELRNKAVAG-LEVRLAQGAIAKGYH-- 333
                                            ++L    + G    +LA     + Y   
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
             +++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LSEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+  P   ++L  AI      + A  + DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R V+VD+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDICDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEAS-ADKP 861
            K   + +   IQ + P VN   + F V  +    + L A+KGVG      IME    + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVHSIMEERSKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              + ++     ++F  E         + +     +   R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQADKAAAFNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077

Query: 973  PILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      +    A + G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|150004438|ref|YP_001299182.1| DNA polymerase III alpha subunit [Bacteroides vulgatus ATCC 8482]
 gi|294775512|ref|ZP_06741024.1| putative DNA polymerase III subunit alpha [Bacteroides vulgatus
            PC510]
 gi|149932862|gb|ABR39560.1| DNA polymerase III alpha subunit [Bacteroides vulgatus ATCC 8482]
 gi|294450657|gb|EFG19145.1| putative DNA polymerase III subunit alpha [Bacteroides vulgatus
            PC510]
          Length = 1265

 Score =  955 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1147 (30%), Positives = 577/1147 (50%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59
             FVHL VH+ YS+L+G  S+  ++DK  AD    IA+TD  ++F   EF           
Sbjct: 3    DFVHLHVHTQYSILDGQASIPRLVDKAMADGMKGIAVTDHGDMFGIKEFFNYVNKKNSST 62

Query: 60   -----------------------------------QKACAAGIQPIIGCQLDIDMQDNLK 84
                                               + A     +PI GC++ +      +
Sbjct: 63   NSEIKDLKKRIAGLEKGTVECDNPETELVACKEKLETAKKKLFKPIFGCEMYVA---RRR 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            + N+   P  +   +V+L    +GY  LI+LVS+ +         R     L++   EGL
Sbjct: 120  LFNKEGKPDQSGYHLVVLAKNEKGYHNLIKLVSKAWTEG-FYMRPRTDRVELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-----------YD 193
            I+ T   +G + R       + AE+ +  +K++FGD  Y+ LQRH+              
Sbjct: 178  IVCTACIAGEVPRNIIAGKYEEAEEAIQWYKRVFGDDFYLELQRHKATVPRANHEAYKLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +    ++++ +    + LV TN+  F+ EE+ EAHD L+ ++    +   +R   +   +
Sbjct: 238  QIANEKLIEYSKKFNVKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYSKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--------- 304
            +K R+EM  +F+D+PEAL NTV+I  +  F    HAPI+P F   E    +         
Sbjct: 298  MKTRAEMNEVFADVPEALSNTVDICDQVEFYSIDHAPIMPTFAIPEDFGTEEGYRKKYTE 357

Query: 305  --------------------------------------KEEENELRNKAVAGLEVRLAQG 326
                                                  K E + L+  A+ G   R  + 
Sbjct: 358  KDLFDEFTQDENGNVVMSEEAAKAKIEKLGGYDKLYRIKLEADYLKKLALEGAHKRYGE- 416

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                   +++ ++R+ FEL+++  M F GYFLIV DFI+ A++  ++ VGPGRGS AGS 
Sbjct: 417  -----VLSEEVQERIKFELHIMKTMGFPGYFLIVQDFIRAAREELDVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+ + LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA 
Sbjct: 472  VAYCLGITKIDPIAYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRLCKL+P+  P   ++L  AIA     + A +
Sbjct: 532  IITYGTMATKLAIKDVARVQKLPLSESDRLCKLVPDKIPDKKMNLPNAIAYVPELQAAEV 591

Query: 504  A-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558
            + DP +   ++ ++ LEG  R+   HA G +I    ++  VP+     ++    + VTQ+
Sbjct: 592  SPDPILRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL++++++++ +   +G+ +D+  +   D  TY L +   T
Sbjct: 652  EGSVIEDTGLIKMDFLGLKTLSIIKEAIENIKHSKGIILDIDEVDISDPPTYALYSEGRT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  ++P   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELEPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPI 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGR 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA+M+  + 
Sbjct: 832  KNGHDPKVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAATMSRNIS 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEA 856
            N+ +I K   +++   I    P VN   + F V       + L AIKGVG +  + I+E 
Sbjct: 892  NITEITKLMDESKATGIMTKGPDVNESYLKFSVNRKGDIRFGLGAIKGVGESAVQSILEE 951

Query: 857  SA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL-------QSLDN 907
               +  +  + DF  RV+    NR+ +E+L  AGA D F G  R              + 
Sbjct: 952  RERNGEYKDIFDFVQRVNLSACNRKNIENLALAGAFDSFTGIKREDFFVKNAKDETFTEV 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         +          R   E+ ++G Y S HP
Sbjct: 1012 LVRYGNKYQMDKAAAANSLFGGENQVDIATPEIIPSPAWGDLERLNKERDLVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  IL  +      E      ++  ++ +  +V + ++  T+ G   G     + + 
Sbjct: 1072 LDEYAVILENVCNVHMAELADLTPLQNRDLTMGGIVTAVREGYTKTGKPYGIAKVEDYSG 1131

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1132 SAEFAFF 1138


>gi|260592651|ref|ZP_05858109.1| DNA polymerase III, alpha subunit [Prevotella veroralis F0319]
 gi|260535421|gb|EEX18038.1| DNA polymerase III, alpha subunit [Prevotella veroralis F0319]
          Length = 1239

 Score =  955 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1120 (31%), Positives = 546/1120 (48%), Gaps = 107/1120 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA----- 64
             ++HL VH++YS+L+G   +  ++DK  AD    +AITD   +F   EFS          
Sbjct: 3    DYIHLHVHTNYSILDGQSKVTRLVDKAIADGMKGMAITDHGVMFGIKEFSDYCAKVNKER 62

Query: 65   -----AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                    +PI GC++ +  +              +   +++L     GY+ LI+LVS  
Sbjct: 63   KKNGEEPFKPIFGCEMYVARRTMHDKDKS--MHDNSGYHLIVLAKNYNGYKNLIKLVSHA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++ D      R   + L++   E LI+ +   +G I           A +    + ++FG
Sbjct: 121  WV-DGYYYRPRTDRAELEKYH-EDLIVCSACIAGEIPSKIIHGDIDGAREACEWYHRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     ++Q A  + + +V TN+  F  +E  E
Sbjct: 179  DDFYLELQRHEVKDPTILANREAFPLQQKANKVLLQFAKEYGIKVVCTNDCHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ +A +  +    R R +   + K+R EM  +FSD+PEAL NT+E+  +      
Sbjct: 239  AHDHLLCLATNEDLDDPKRMRYSKQEWFKSRQEMNDVFSDIPEALTNTLEVLDKVEIYSI 298

Query: 287  VHAPILPRFIEKE-------------CDDIQKE--------------------------- 306
             H PI+P F   E              +D+ KE                           
Sbjct: 299  DHGPIMPFFPIPESFGTEEEWEKKFTEEDLYKEFTTDENGENPLSPEEGQKVIERLGGYE 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L   A  G +             + + +  + FEL+V+  M F GYFLI
Sbjct: 359  KIYRIKFEADYLAKLAYDGAKKLYGDPL------SDEVKSHIRFELHVMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD 
Sbjct: 413  VQDFINAARQELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R  V+++V +KYGHE  A IIT+G++  K +++DV R  ++P +  + LCK 
Sbjct: 473  DTDFDDDGRGRVLQWVMDKYGHENCAHIITYGTMATKNSIKDVARVEKLPIAIANELCKA 532

Query: 479  IPNDPAHPVSLQ---AIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVI 534
            IP+     + +    AI    + ++A +++   +R  ++ ++ LEG  R+   HA G +I
Sbjct: 533  IPDRLPDGMKMNLANAIKCTPQLQDAEVSEDIRERNTIKYARMLEGTVRNTGIHACGFII 592

Query: 535  GDRPLSQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+   VP+      D     +PVTQ++   IE  GLIK DFLGLKTL+ L+++   +
Sbjct: 593  CRNPIDDWVPVSTATDPDFPEKKVPVTQYDGHVIEATGLIKMDFLGLKTLSELKEACKVI 652

Query: 590  AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q     +DL  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +
Sbjct: 653  RQTTGDIIDLDNIPIDDELTYQLYQKGQTIGTFQFESAGMQKYLRELHPTVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLASFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E+D LR+AMGKK K  +D+ K +FI     NG    I   I+    KFA Y FNKSHA  
Sbjct: 773  ESDALRKAMGKKKKAIVDQMKPKFIKQGQANGHDPQILEKIWSDWEKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ ++YQTA++K HYP E++AA MT     + +I K  ++ +   I  + P +N   + F
Sbjct: 833  YSWVAYQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKALKIATLGPDINESQIGF 892

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V     I + LAAIKG+GT+ A  I+ E   + P+  + DF  RVD   +NR+  ESL 
Sbjct: 893  GVNKKGEIRFGLAAIKGMGTSAAESIVSEREKNGPYKDIYDFAERVDLSNVNRKAFESLA 952

Query: 887  FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            ++G  D FG  R Q           LD I +Y Q  +  +  +  ++F            
Sbjct: 953  YSGGFDSFGLQREQFFGVSGRDSVFLDIIVRYGQLFQTEKAEQQNSLFGGMDAVAVMHPV 1012

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIRGN 993
              K     +  +   E+ ++G Y S HPLD Y  +L  M            +     + +
Sbjct: 1013 APKTEKWPTIEKLNKERELVGVYLSAHPLDEYSVVLNNMCNTHCSMIGRNADMTKLSQTD 1072

Query: 994  NIRLAAMVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032
             +    +V S  ++ + + G   G+VT  +     E   F
Sbjct: 1073 EVTFGGIVTSVNERFSQKTGKPFGFVTIEDFEGTGELALF 1112


>gi|317503779|ref|ZP_07961791.1| DNA-directed DNA polymerase III alpha subunit [Prevotella salivae DSM
            15606]
 gi|315665076|gb|EFV04731.1| DNA-directed DNA polymerase III alpha subunit [Prevotella salivae DSM
            15606]
          Length = 1235

 Score =  955 bits (2469), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1114 (31%), Positives = 553/1114 (49%), Gaps = 99/1114 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62
             F+HL VH+ YS+L+G   ++ ++DK   +    +A+TD   +F   EF+          
Sbjct: 3    DFIHLHVHTYYSILDGQSKISRLVDKAVENGMKGMALTDHGVMFGIKEFADYCAGVNKKR 62

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
             A G++P            + ++ ++ K     +   +++L     GY+ LI+LVS+ ++
Sbjct: 63   KAEGLEPFKPIFGCEMYVAHHRLHDKVKEHGDNSGYHLIVLAKNYNGYKNLIKLVSKSWI 122

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             D      R   + L++   E LI+ +   +G +         + A +    + ++FGD 
Sbjct: 123  -DGYYYRPRTDRTELEKYH-EDLIVCSACIAGEVPSKIIKGDLEGAREACEWYHRVFGDD 180

Query: 182  LYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             Y+ LQRH   D             +     +++ A  + + ++ TN+  F  +E  EAH
Sbjct: 181  YYLELQRHEVKDPTILANREAFPLQQKANKVLLEFAKEYGIKVICTNDVHFEDKETAEAH 240

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            D L+ ++    +   +R R +   + K+R EM  +FSD+PEAL NT+EI  +       H
Sbjct: 241  DHLLCLSTGKDLDDPNRMRYSKQEWFKSREEMNEVFSDVPEALTNTLEILNKVEHYSIEH 300

Query: 289  APILPRFIEKECDDIQKE------------------------------------------ 306
             PI+P F   E    ++E                                          
Sbjct: 301  GPIMPFFPIPESFGTEEEWKLKFSEADLYKEFTSDENGENQLSPEEGQKVIERLGGYDKI 360

Query: 307  -----EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 E + L   A  G +               + ++ ++FEL+V+  M F GYFLIV 
Sbjct: 361  YRIKFEADYLAKLAHDGAKKLYGD------PIPSNVQEHINFELHVMKTMGFPGYFLIVQ 414

Query: 362  DFIQWAK-KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            DFI  A+ + ++ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D 
Sbjct: 415  DFINAARTELDVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDT 474

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  D R +V+R+V +KYGHE  A IIT+ S+  K +++DV R  ++P  + + LCK IP
Sbjct: 475  DFDDDGRGKVLRWVMDKYGHENCAHIITYASMATKNSIKDVARVEKLPLDKSNFLCKAIP 534

Query: 481  NDPAHPVSLQ---AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +     + +    AI      R+A ++ D      ++ ++ LEG  R    HA G +I  
Sbjct: 535  DRLPDGLKMNLTNAIKCTPELRDAEVSQDLRERNTIKYAKMLEGTVRGTGIHACGFIICR 594

Query: 537  RPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             P+S  VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   + +
Sbjct: 595  DPISNWVPVSTADDPDYPGFKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVVKK 654

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
             + + VDL  IP DD  TY L     T+G FQ ES GM++ L  + P   ED+IA+ +LY
Sbjct: 655  TKNIDVDLDTIPIDDELTYQLYQQGRTIGTFQFESPGMQKYLRELHPTVFEDLIAMNALY 714

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  +  RKN   ++    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+
Sbjct: 715  RPGPMDYIPDFIKRKNDPTQVSYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGES 774

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D LR+AMGKK K  +D  K +FI   ++NG    I   I+    KFA Y FNKSHA  Y+
Sbjct: 775  DALRKAMGKKKKAIVDAMKPKFIKQGTENGHDPKILEKIWGDWEKFASYAFNKSHATCYS 834

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++YQTA+MK H+P E++AA MT     + +I K  ++ +   I  + P VN    +F V
Sbjct: 835  WVAYQTAYMKAHFPAEYMAALMTRRFSQITEITKLMEECQSMKIATLGPDVNESYSEFGV 894

Query: 831  G-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                 I + L+AIKG+G   A+ I+ E  A+ PF  + DF  R+D   +NR+  ESL  +
Sbjct: 895  NKRGEIRFGLSAIKGMGEMAAQSIVKEREANGPFKDIYDFAQRIDFSNVNRKAFESLALS 954

Query: 889  GALDCFGYSRMQLLQ-------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            G  D F Y R Q           LD + +Y Q  ++ +     ++F  E      +    
Sbjct: 955  GGFDGFEYRREQYFAPGMKGDVFLDTLVRYGQLYQQEQREARNSLFGGESAVEISRPIPG 1014

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIRLA 998
            KF   ++  R   E+ ++G Y S HPLD Y  IL+ +      E       ++   I + 
Sbjct: 1015 KFEEWSTIERLNRERDLVGIYLSAHPLDEYGVILKSLCNTHCTELDKKEELVKKEEISIG 1074

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +V   + K T+ G   G+VT  +     E  FF
Sbjct: 1075 GIVTGVKSKFTKTGKPCGFVTIEDFEGSGELAFF 1108


>gi|88802679|ref|ZP_01118206.1| putative DNA polymerase III alpha subunit [Polaribacter irgensii
            23-P]
 gi|88781537|gb|EAR12715.1| putative DNA polymerase III alpha subunit [Polaribacter irgensii
            23-P]
          Length = 1445

 Score =  955 bits (2469), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1071 (32%), Positives = 555/1071 (51%), Gaps = 64/1071 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------SQKACA 64
            F HL  H+ YS+L+  + +  I+   A D  PA+A+TDT N+ +A  F        K   
Sbjct: 260  FSHLHNHTQYSVLQSTMEIGQIVKAAADDNMPAVAMTDTANMMAAFHFVSAILNHNKTAK 319

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              ++PI+GC      + N+   ++ K+       +VLL     GY  L ++ S  ++ D 
Sbjct: 320  TPMKPIVGC------EFNVCGDHKNKSQKDNGFQVVLLAKNKRGYHNLAKMSSIAFV-DG 372

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    +++   E +I+LTG   G +         + AE+ L+ +K+ F D LY+
Sbjct: 373  FYYVPRIDREIIKKY-KEDIIVLTGNLYGEVPSKILNLGEKQAEEALIWWKEEFKDDLYI 431

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L RH   D       ++  +  H + ++ATNN+ +L ++D  AHD+L+ V      +  
Sbjct: 432  ELMRHDQQDEKIVNETLLTFSKKHNIKVIATNNTFYLEKKDANAHDILLCVKEGEKQATP 491

Query: 244  -------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
                          ++Y K+  EM ++F+DLPEA+ N  EI  +          +LP F 
Sbjct: 492  IGKGRGYRYGLPNQEYYFKSSEEMKTLFADLPEAISNIQEIVDKIEIYTLARDVLLPAFD 551

Query: 297  EK--------ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                      E D  ++ E N L++    G E R        G      ++RLDFEL+VI
Sbjct: 552  IPDEFKDIADESDKGKRGENNFLKHLTFVGAEKRY-------GDITASIKERLDFELSVI 604

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +  + GYFLIV DFI+ A+  ++ VGPGRGS AGSV AY L IT+IDP+++ LLFERFL
Sbjct: 605  EKTGYPGYFLIVEDFIREARNMDVAVGPGRGSAAGSVVAYCLWITNIDPIKYDLLFERFL 664

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF  + R  V+ YV NKYG  +VAQIIT+G++ AK+++RD  R L +P
Sbjct: 665  NPERVSMPDIDIDFDDEGRGRVMDYVINKYGANQVAQIITYGTMAAKSSIRDTARVLDLP 724

Query: 469  YSQVDRLCKLIP---------NDPAHPVSLQAIADDS-----RFREARLADPSVDRLLEI 514
              + DR+ KLIP         +DP     +  +  +        R     +  V   +  
Sbjct: 725  LFEADRIAKLIPLIKLKNIFGDDPKSKGKVAGLRSEEKQLVEELRSMSFGNDLVSETINK 784

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            +  LEG  R+   HA G++I    ++  VP+     SD+ VTQF+   +E AGL+K DFL
Sbjct: 785  ATMLEGSVRNTGIHACGVIITPGDITNYVPVALAKDSDMYVTQFDNSVVESAGLLKMDFL 844

Query: 575  GLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GLKTLTL++ ++  +  R  V +D    P DD +TY L     T+GIFQ ES GM++ + 
Sbjct: 845  GLKTLTLIKDTVKIVKARHNVDLDPDSFPLDDVKTYELFQRGETVGIFQYESPGMQKHMR 904

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
             ++P    D+IA+ +LYRPGP++ I  + NRK+G E I    P ++  L ET G+ +YQE
Sbjct: 905  SLKPTVFADLIAMNALYRPGPMEYIPSFINRKHGTEDIAYDLPAMEEYLAETYGITVYQE 964

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVM ++Q L+ ++  EADVLR+AMGKK    ++K K +F+  AS+ G        I++  
Sbjct: 965  QVMLLSQKLADFTKGEADVLRKAMGKKQIAVLNKMKPKFLEQASEKGHDAEKLEKIWKDW 1024

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNKSH+  YA I+YQTA++K HYP E++A+ ++  M++++ +  F ++ ++  
Sbjct: 1025 EAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMASVLSNNMNDIKSVSFFMEECKRME 1084

Query: 814  IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
            + +  P +N   + F V D   + + +AA+KGVG    R I++   +   + S+ D   R
Sbjct: 1085 LPVFGPDLNESFLKFSVNDEGAVRFGMAAVKGVGAGAVRAIIKEREEHGNYTSIFDLAKR 1144

Query: 872  VDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQWVEKNRTNKH 923
            VD +  N++  +SLV AGA D F    R Q   +       L+   KY    ++N  +  
Sbjct: 1145 VDLRAANKKSFDSLVKAGAFDSFEDTHRAQYFHTDEKGLTFLERAMKYGSKYQENENSAQ 1204

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR--KMGIK 981
             ++F         +  + +     +      E+ V+G Y S HPLD +K  L+     +K
Sbjct: 1205 VSMFGEASSVQFPEPDIPECDTWGTMELLSQEKEVIGIYISAHPLDDFKNELKFCNASLK 1264

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++  ++     N+  A ++   Q + ++ G      T  +     E   F
Sbjct: 1265 YFKADLSKFINLNMAFAGIITDVQHRVSKAGKGWAMFTAEDYGDSNEFRIF 1315


>gi|237714902|ref|ZP_04545383.1| DNA polymerase III alpha subunit [Bacteroides sp. D1]
 gi|262406830|ref|ZP_06083379.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229445227|gb|EEO51018.1| DNA polymerase III alpha subunit [Bacteroides sp. D1]
 gi|262355533|gb|EEZ04624.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|295084710|emb|CBK66233.1| DNA polymerase III, alpha subunit [Bacteroides xylanisolvens XB1A]
          Length = 1268

 Score =  955 bits (2469), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1142 (31%), Positives = 573/1142 (50%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMQNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +P+IGC++ +       
Sbjct: 63   KGEVKDLKKRIAGIEAGTIECADKEAEIAACKAKIVEAENKLFKPVIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDLKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ----- 199
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+        +     
Sbjct: 178  IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237

Query: 200  ------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A    + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKYLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE------ 307
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++        
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357

Query: 308  -------------------------------ENELRNKAVAG-LEVRLAQGAIAKGYH-- 333
                                            ++L    + G    +LA     + Y   
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
             +++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LSEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+  P   ++L  AI      + A  + DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R V+VD+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDICDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEAS-ADKP 861
            K   + +   IQ + P VN   + F V  +    + L A+KGVG      IME    + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVHSIMEERSKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSV-ENSSVRFENEQRVLGFYFSGHPLDVYK 972
              + ++     ++F  E         + + +   +   R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQADKAAAFNSLFGGENVIDVATPEIPQGAERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077

Query: 973  PILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      +    A + G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|270294536|ref|ZP_06200738.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270276003|gb|EFA21863.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1265

 Score =  955 bits (2469), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1147 (31%), Positives = 570/1147 (49%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ------------------------------------KACAAGIQPIIGCQLDIDMQDNLK 84
                                                +A +   +PI+GC++ +       
Sbjct: 63   KGEIKDLKKRIAGIESGEIECEDKEAEIADCRAKMAEAESKLFKPIVGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +    +  + AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IVCSACIGGEVPKKIINDQLEEAEEAVRWYKNLFGDDYYLELQRHKATVPRANHEAYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   +++++LA  +++ ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  QKANAKLLELARKYDIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--------- 304
            +K ++EM ++F D+PEAL NT+EI  +  +    HAPI+P F   E    +         
Sbjct: 298  MKTKAEMNALFEDVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 357

Query: 305  --------------------------------------KEEENELRNKAVAGLEVRLAQG 326
                                                  K E + L   A  G +      
Sbjct: 358  KDLFDEFTQDENGKVVLDEDAANAKIKRLGGYDKLYRIKLEADYLAKLAFDGAKKLYGDP 417

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                   + + ++RL FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS 
Sbjct: 418  L------SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V  KYG E+VA 
Sbjct: 472  VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRLCKL+P+  P   ++L  AIA     + A  
Sbjct: 532  IITYGTMATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEA 591

Query: 504  A-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558
            + DP V   ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+
Sbjct: 592  SPDPLVRDTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL+++++++  +   RG+++D+  I   D  TY L     T
Sbjct: 652  EGSVIEDTGLIKMDFLGLKTLSIIKEAVANVRLHRGLELDIDKISISDPATYKLYCDGRT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPI 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FISG  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFISGGQ 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + 
Sbjct: 832  KNGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLA 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEA 856
            N+  I K   + +   I  + P VN   + F V       + L A+KGVG    + IME 
Sbjct: 892  NITDITKLMDECKAMGINTLGPDVNESNLKFTVNKEGNIRFGLGAVKGVGEGAVQSIMEE 951

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907
               + PF  + DF  RV+    N++ LE L  AG  D F    R Q           L+ 
Sbjct: 952  REKNGPFKGIFDFVQRVNLTACNKKNLECLALAGGFDSFPELKREQYFAVNSKNEVFLET 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         +      +   R   E+ ++G Y S HP
Sbjct: 1012 LVRYGNRYQADQAAAANSLFGGENVVDIATPEIPVAERWSDLDRLNRERDLVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  +L  +      E      + G  I +  +V + ++  ++ G+  G     + + 
Sbjct: 1072 LDEYSVVLEHVCNTHMAELEDKTALVGREITMGGIVTAVRRGISKNGNPYGIAKIEDYSG 1131

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1132 SAELPFF 1138


>gi|254882838|ref|ZP_05255548.1| DNA polymerase III alpha subunit [Bacteroides sp. 4_3_47FAA]
 gi|319643401|ref|ZP_07998027.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_40A]
 gi|254835631|gb|EET15940.1| DNA polymerase III alpha subunit [Bacteroides sp. 4_3_47FAA]
 gi|317385030|gb|EFV65983.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_40A]
          Length = 1265

 Score =  955 bits (2469), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1147 (30%), Positives = 577/1147 (50%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59
             FVHL VH+ YS+L+G  S+  ++DK  AD    IA+TD  ++F   EF           
Sbjct: 3    DFVHLHVHTQYSILDGQASIPRLVDKAMADGMKGIAVTDHGDMFGIKEFFNYVNKKNSST 62

Query: 60   -----------------------------------QKACAAGIQPIIGCQLDIDMQDNLK 84
                                               + A     +PI GC++ +      +
Sbjct: 63   NSEIKDLKKRIAGLEKGTVECDNPEAELVACKEKLETAKKKLFKPIFGCEMYVA---RRR 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            + N+   P  +   +V+L    +GY  LI+LVS+ +         R     L++   EGL
Sbjct: 120  LFNKEGKPDQSGYHLVVLAKNEKGYHNLIKLVSKAWTEG-FYMRPRTDRVELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-----------YD 193
            I+ T   +G + R       + AE+ +  +K++FGD  Y+ LQRH+              
Sbjct: 178  IVCTACIAGEVPRNIIAGKYEEAEEAIQWYKRVFGDDFYLELQRHKATVPRANHEAYKLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +    ++++ +    + LV TN+  F+ EE+ EAHD L+ ++    +   +R   +   +
Sbjct: 238  QIANEKLIEYSKKFNVKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYSKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--------- 304
            +K R+EM  +F+D+PEAL NTV+I  +  F    HAPI+P F   E    +         
Sbjct: 298  MKTRAEMNEVFADVPEALSNTVDICDQVEFYSIDHAPIMPTFAIPEDFGTEEGYRKKYTE 357

Query: 305  --------------------------------------KEEENELRNKAVAGLEVRLAQG 326
                                                  K E + L+  A+ G   R  + 
Sbjct: 358  KDLFDEFTQDENGNVVMSEEAAKAKIEKLGGYDKLYRIKLEADYLKKLALEGAHKRYGE- 416

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                   +++ ++R+ FEL+++  M F GYFLIV DFI+ A++  ++ VGPGRGS AGS 
Sbjct: 417  -----VLSEEVQERIKFELHIMKTMGFPGYFLIVQDFIRAAREELDVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+ + LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA 
Sbjct: 472  VAYCLGITKIDPIAYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRLCKL+P+  P   ++L  AIA     + A +
Sbjct: 532  IITYGTMATKLAIKDVARVQKLPLSESDRLCKLVPDKIPDKKMNLPNAIAYVPELQAAEV 591

Query: 504  A-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558
            + DP +   ++ ++ LEG  R+   HA G +I    ++  VP+     ++    + VTQ+
Sbjct: 592  SPDPILRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL++++++++ +   +G+ +D+  +   D  TY L +   T
Sbjct: 652  EGSVIEDTGLIKMDFLGLKTLSIIKEAIENIKHSKGIILDIDEVDISDPPTYALYSEGRT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  ++P   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELEPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPI 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGR 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA+M+  + 
Sbjct: 832  KNGHDPKVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAATMSRNIS 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEA 856
            N+ +I K   +++   I    P VN   + F V       + L AIKGVG +  + I+E 
Sbjct: 892  NITEITKLMDESKATGIMTKGPDVNESYLKFSVNRKGDIRFGLGAIKGVGESAVQSILEE 951

Query: 857  SA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL-------QSLDN 907
               +  +  + DF  RV+    NR+ +E+L  AGA D F G  R              + 
Sbjct: 952  RERNGEYKDIFDFVQRVNLSACNRKNIENLALAGAFDSFTGIKREDFFVKNAKDETFTEV 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         +          R   E+ ++G Y S HP
Sbjct: 1012 LVRYGNKYQMDKAAAANSLFGGENQVDIATPEIIPSPAWGDLERLNKERDLVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  IL  +      E      ++  ++ +  +V + ++  T+ G   G     + + 
Sbjct: 1072 LDEYAVILENVCNVHMAELADLTPLQNRDLTMGGIVTAVREGYTKTGKPYGIAKVEDYSG 1131

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1132 SAEFAFF 1138


>gi|229496705|ref|ZP_04390419.1| DNA polymerase III, alpha subunit family [Porphyromonas endodontalis
            ATCC 35406]
 gi|229316602|gb|EEN82521.1| DNA polymerase III, alpha subunit family [Porphyromonas endodontalis
            ATCC 35406]
          Length = 1251

 Score =  955 bits (2468), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1125 (30%), Positives = 565/1125 (50%), Gaps = 114/1125 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66
             FVHL VHS +S+L+G  S++ ++ K   D  P IA+TD   +F    F  +        
Sbjct: 3    PFVHLHVHSQFSILDGQASVSALVKKAIGDGMPGIALTDHGVMFGIKTFFDECNKVNSKH 62

Query: 67   ------------------------------------------IQPIIGCQLDIDMQDNLK 84
                                                       +PI GC+     +    
Sbjct: 63   RSRISALKKEIKELQKKESPTPEDKEEIEKLEQEISEVERQMFKPIFGCEAYCARRTRFD 122

Query: 85   MT-------NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
                     N  ++   +   ++LL    +GY  L ++VS  +   +     RI    L+
Sbjct: 123  KDKDVPDPYNPSRSIDRSGWHLILLAKNKQGYLNLCKMVSASFTEGE-YYRPRIDKDLLE 181

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR--- 194
            +   EG+I+++    G + +       + AE+ +  FK +FG+  Y+ +Q H+  D    
Sbjct: 182  QYH-EGVIVMSACLGGEVPQHILGGHPERAEETVRWFKNIFGEDYYLEVQLHQTDDPNAN 240

Query: 195  --------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                         +  +A    + +VATN+  F+++ED  AHD+L+ +     +    R 
Sbjct: 241  RETFVQQLAVNEVIYDIAERTGVKVVATNDVHFVNQEDATAHDMLICLGTKRDLDDPQRM 300

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R +   +LK + EM ++F+D PE L NT+EI  +  F    +  ++P F   E  D   +
Sbjct: 301  RYSQQEWLKTQEEMNAVFADRPELLSNTLEILNKVEFYTIENPALMPDFPLPEGFD---D 357

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L++    G ++R            ++ ++R+DFELN I  M F GYFLIV D IQ 
Sbjct: 358  ADKYLQHLTYEGAKMRYGD------PIPEEVKERIDFELNTIKSMGFPGYFLIVQDLIQA 411

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   + VGPGRGS AGS  AY L IT++DPL++ LLFERFLNPDR+S+PD DIDF    
Sbjct: 412  ARDMGVCVGPGRGSAAGSAVAYCLKITNLDPLKYGLLFERFLNPDRISLPDIDIDFDDSG 471

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH- 485
            R +++++   KYGH+ VAQIITFG ++AK+++ DV R   +P  +  R+ KLIP+  +  
Sbjct: 472  RAKILQWATEKYGHKNVAQIITFGEMKAKSSIADVARLKHIPVEESRRITKLIPDKFSDS 531

Query: 486  ------------------PVSLQAIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHAS 526
                               + L  +      ++ ++ ++  +    + +QKLEG  R+  
Sbjct: 532  DMELIHKTPGYENAKGNVTIELSTLV-VPELKKLQVGSNTQIQDTFKYAQKLEGSIRNIG 590

Query: 527  THAAGIVIGDRPLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
             HA G++IG   +S ++P+   + +    + +TQ+  K IE  GLIK DFLGLKTL++++
Sbjct: 591  VHACGVIIGKYDISDVIPISTSFDENGEKVLITQYEGKVIESTGLIKMDFLGLKTLSIIR 650

Query: 584  KSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            + L+ +  R    +D+  IP DD +T+ L      +GIFQ ES+GM++ L  +QPD  E 
Sbjct: 651  EGLENVKHRFHKDIDIDHIPLDDEKTFKLFCEGRMVGIFQFESAGMQKYLRELQPDRFEL 710

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            +IA+ +LYRPGP+  I  Y  R++G+E+I+   P    +L+ET GV +YQEQVM +++ L
Sbjct: 711  LIAMNALYRPGPMKYIPQYIARRHGREEIIYDVPETKEILEETFGVTVYQEQVMLLSRSL 770

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            + ++  ++D LR+AMGKK  EEM+K K  F+ G  +NG SK +   I+     FA Y FN
Sbjct: 771  ANFTRGQSDSLRKAMGKKKIEEMEKLKADFLKGGVENGHSKEVLEKIWMDWEDFAKYAFN 830

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            KSHAA Y+ ++YQTA++K HYP EF+A +++  + N  +I K  ++ +   I+++ P VN
Sbjct: 831  KSHAACYSWLAYQTAYLKAHYPSEFMAGNLSCNLSNAPEIAKLMKECKAMGIRLLSPDVN 890

Query: 823  TPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRR 880
                 F V  N    + L+ IKGV  TT   ++E    + PF S+ DF +R+  + +NR+
Sbjct: 891  ESMQKFSVNSNGDIRFGLSGIKGVNQTTIDKLIEDREQNGPFTSIYDFVARIPRQFINRK 950

Query: 881  VLESLVFAGALDCFGYSRMQLLQ---------SLDNIQKYAQWVEKNRTNKHENIFAHEK 931
             +E+   +GA D FG  R               +  +  Y + V++  +++   +F   +
Sbjct: 951  TMEAFALSGAFDSFGIERESFFAPPVNSREDSFIATLLAYGRIVQEESSSQSMGLFGESE 1010

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK----GYEESV 987
                 +  + +    N+  +   E  ++G Y S +PL+ Y+ IL K+         ++ +
Sbjct: 1011 ELSIPEPEVPQAEPWNNLTKLSKEYELVGIYISSNPLEPYRLILDKLCTVKLDDLDKKDL 1070

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +   +  A +V +  +  T+     G  T  + +  +E   F
Sbjct: 1071 EEFKDTRMVFAGLVTNVMEGLTKTNKPYGRFTLEDLSGSHEFALF 1115


>gi|134102263|ref|YP_001107924.1| DNA polymerase III subunit alpha [Saccharopolyspora erythraea NRRL
            2338]
 gi|291003774|ref|ZP_06561747.1| DNA polymerase III subunit alpha [Saccharopolyspora erythraea NRRL
            2338]
 gi|133914886|emb|CAM04999.1| DNA polymerase III alpha subunit [Saccharopolyspora erythraea NRRL
            2338]
          Length = 1194

 Score =  955 bits (2468), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1073 (32%), Positives = 545/1073 (50%), Gaps = 60/1073 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YS+L+GA  +  +  +    + PA+ +TD  N+F A EF Q+A   GI+P
Sbjct: 5    PFVHLHVHTEYSMLDGAAKVGALFAEAQRLEMPAVGMTDHGNMFGADEFYQQAKKTGIKP 64

Query: 70   IIGCQLDIDMQDNLKMT-----------------NQGKTPFPTVPSIVLLVSTAEGYQRL 112
            IIG +  +                              +       + +L   A G + L
Sbjct: 65   IIGIEAYLAPGSRFHKKPVFWGEAKQRGTDEYGEGGDVSGAGAYTHMTMLARNATGLRNL 124

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
              L SR  +  Q  +  R+    + E   EG+I  TG  SG +           A +   
Sbjct: 125  FTLSSRASMEGQ-YRKPRMDRELVAEYA-EGIIATTGCPSGEVQTRLRLRQFDEAMQAAS 182

Query: 173  TFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             +K +F  +  ++ L  H    +R     ++++A    L  VATN+S +++ +  E+H  
Sbjct: 183  DYKDIFGAENFFLELMDHGLPIERSVREGLLKIAKELGLKPVATNDSHYVTADQAESHGA 242

Query: 231  LMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVH 288
            L+ V     ++ + R +   D +YLK+ +EM   +  ++P A +NT+ IA R      V 
Sbjct: 243  LLCVQSGKTLNDESRFKFDGDGYYLKSAAEMREYWDKEVPGAADNTLLIAERVESYEDVW 302

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
            +      + +  D   K E   L  +    L  R  +GA       Q+   R+  EL+V+
Sbjct: 303  S--FQDRMPRVTDGSGKTERQLLEAEVEQYLPTRYPEGA------TQECLDRIKVELDVL 354

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
                +  YFL+V D  +WAK   I VGPGRGS AGS+ AY L IT++DPL   L+FERFL
Sbjct: 355  DTKGYCAYFLVVGDLTRWAKSQGIHVGPGRGSAAGSLLAYILHITNLDPLEHGLIFERFL 414

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--Q 466
            NP+R S PD D+DF   RRDEV++Y  +KYG ++VAQ+ITFG ++ KAA++D  R    Q
Sbjct: 415  NPERDSPPDIDLDFDDRRRDEVLQYAIDKYGRDKVAQVITFGKIKTKAAIKDSARVHHGQ 474

Query: 467  MPYSQVDRLCKLIPNDPA-HPVSLQAI--------ADDSRFREARLADPSVDRLLEISQK 517
              ++  D++ K +P   A   + L  I        A+ +  R     DPSV ++ + ++ 
Sbjct: 475  PGFAIADKISKALPPPIAAKDIPLSGIVDPQHERYAEAAEVRNLIETDPSVSQIFDTARG 534

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R+A  HA  +++  +PL   VP++        +T ++    E  GL+K DFLGL 
Sbjct: 535  LEGLIRNAGVHACAVILSSQPLMGTVPLW-ARDDGSIITGWDYPSCEAIGLLKMDFLGLS 593

Query: 578  TLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT+L  +L  +      ++DLS +  DD +TY LL    +LG+FQLE  GMR+ L+ MQ
Sbjct: 594  NLTILGDALKMVKANHDREIDLSNLGLDDAKTYELLARGESLGVFQLEGGGMRELLKRMQ 653

Query: 637  PDCIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVII 690
            P    DI+A  +LYRPGP++      Y +RKNGK+ +  IHP +D     +L ET G+I+
Sbjct: 654  PTEFADIVACNALYRPGPMEVNAHNDYADRKNGKKPVEPIHPDLDEPLKDILSETYGLIV 713

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQ+M IAQ ++GYSL  AD+LRRAMGKK KE +D++ E F +G  + G        ++
Sbjct: 714  YQEQIMAIAQKVAGYSLGRADILRRAMGKKKKEVLDQEFEGFQAGMREQGFRDEAIDKLW 773

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
              +  FA Y FNKSHAA YA+++Y TA++K +YP E++AA +T   DN +K+  +  + R
Sbjct: 774  ATVLPFAGYAFNKSHAAGYALVAYWTAYLKANYPAEYMAALLTSNGDNKDKMAVYLAECR 833

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFC 869
            +  ++++ P VN    DF    + I + L+A++ VG+     I +   D   + S  DF 
Sbjct: 834  RMGVKVLSPDVNDSLNDFTAVGSDIRFGLSAVRNVGSNVVASIAKVREDKGRYSSFTDFL 893

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             + ++   N+RV+ESL+ AGA D  G++RM L Q  +        +++ +     ++F  
Sbjct: 894  DKSETVACNKRVIESLIKAGAFDSLGHTRMSLAQHHEAAVDAVIGLKRQQALGQFDLFGG 953

Query: 930  EKGTFSDKITLEK------FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                  ++ +                     E+ +LG Y S HPLD  + +L      G 
Sbjct: 954  GDDAGGEESSSPLAHLQFTPDEWPRKQMLSYEREMLGLYVSAHPLDGAERLLAPYQDTGI 1013

Query: 984  EESVATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             E V   R    + +++A M+   Q++  + G     VT  +     E  FFP
Sbjct: 1014 AELVGGEREAGKDQVKIAGMISGIQRRINKNGHPWAIVTLEDLDASVEVLFFP 1066


>gi|296125094|ref|YP_003632346.1| DNA polymerase III, alpha subunit [Brachyspira murdochii DSM 12563]
 gi|296016910|gb|ADG70147.1| DNA polymerase III, alpha subunit [Brachyspira murdochii DSM 12563]
          Length = 1240

 Score =  955 bits (2468), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1037 (35%), Positives = 581/1037 (56%), Gaps = 36/1037 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNI--------------LDKIAADQQPAIAITDTNNLFSA 55
            SFVHL VH+ YS+L+GA  + ++              +D+    + PAIAITD  N+F  
Sbjct: 2    SFVHLHVHTQYSILDGASRIKSLYSKKDKKKRLIPGLIDRAVELEMPAIAITDHGNMFGV 61

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +EF  +A   GI P+IGC+L +  +       +      +   ++LL    EGY  L +L
Sbjct: 62   MEFFSEAKDKGIIPVIGCELYVAPKTRFDKKIENSEEK-SAMHLILLAKDKEGYDNLCKL 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            V+  Y         R+    +++   +GLI L+    G I  A      + A K    +K
Sbjct: 121  VTFGYTEG-FYYRPRVDHELIEKY-NKGLICLSACMGGEIPIAIRKKDYKQASKLAEYYK 178

Query: 176  KLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
             +FG+  Y+ LQ H   +     S + +LA  H + +V TN+  ++ +ED +AH++L+A+
Sbjct: 179  SIFGNDFYIELQDHNIPEEKSLNSALYKLANHHSIEMVVTNDVHYVLKEDAKAHEILLAI 238

Query: 235  AHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRC-SFILQVHAPIL 292
                 +    R +  + + +LK++ EM+  F+ LP+A ENTV+IA +C    +      +
Sbjct: 239  QTKATLDSPRRYKFPSNEFHLKSKEEMMKSFAKLPKAFENTVKIAEQCRDLNIMTKTYYM 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P +     +     E   LRN  + GL               ++  +RL+ EL VI++M 
Sbjct: 299  PNYELPNGE----TETTALRNMCMEGLNKHYNNNI------PKEAMERLEMELGVISKMG 348

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFL+V DFI +A+ +++ VGPGRGS AGS+ A+A  IT ++PL ++LLFERFLNP+R
Sbjct: 349  FEGYFLVVQDFINYARNHDVAVGPGRGSAAGSIVAFATGITKVNPLDYNLLFERFLNPER 408

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
             SMPD D+DF  D+R+ +I YV+ KYG + VAQI TFG+L  ++ +RDV R + +  +  
Sbjct: 409  KSMPDIDVDFQDDKREVIIDYVKEKYGKDNVAQIATFGALGGRSVIRDVCRVMGIDLATA 468

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            DRL K IPND +  V +    D + FR+   +   +  + EIS +L+GL R+   HAAG+
Sbjct: 469  DRLAKGIPNDVSRVVDIYDHPDCAEFRKEVESSRELKNMYEISTRLDGLVRNVGLHAAGV 528

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            +I   P+  L P+Y+D ++     Q+ M ++E AGLIK DFLG+K L L++ ++  + +R
Sbjct: 529  IISSHPIMDLAPVYQDSKTGTRACQYEMTYVESAGLIKMDFLGIKNLRLIKDAVKDIKER 588

Query: 593  G-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
               ++D+  IP DD   Y +     T G+FQ ES GMRQ L  +QP   +D+++ V+LYR
Sbjct: 589  YGTEIDIDKIPLDDEAVYDIFRKADTGGVFQFESPGMRQMLINIQPTGFDDLVSSVALYR 648

Query: 652  PGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+++ +   Y +RKN +++IV  HP ++P+LKE+QGV+IYQEQ+M I++++ G++ +E
Sbjct: 649  PGPLNSGMDKDYADRKNKRKEIVYKHPDLEPILKESQGVLIYQEQIMAISRVIGGFTAAE 708

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD LR+AMGKKI E+M+  +E+FI+G  + G  K +   +F+ +  FA+YGFNKSH+  Y
Sbjct: 709  ADDLRKAMGKKIVEKMNSMEEKFINGGLERGYDKELLTYLFDTMKGFAEYGFNKSHSVCY 768

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+I+YQ A++K HYP+E+  A +   + + +KI  +  + +Q NI I+  SV      F 
Sbjct: 769  ALIAYQEAYIKAHYPMEYYVALLNTVIADTDKISLYLNEVKQKNIDIVTASVFESNALFS 828

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              + +I Y+L A+KGVG   A  I E    +  F +LEDF  RVD   +NR+V E+L+  
Sbjct: 829  QKNGKIVYALHAVKGVGLHAALAIEEEREKNGQFKNLEDFVKRVDVHLVNRKVYETLIKC 888

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVE 946
            GA   FG++   LL SLD I  +A   +K   +    +F    E  + S  + +EK    
Sbjct: 889  GAFSEFGHTESALLASLDAILAHASNYQKETLSGQTMLFDSMSEDDSGSASLVIEKQVEY 948

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
             S++  ENE+ VLGF    HP   Y   +         +       +   L  +V+S  +
Sbjct: 949  ASNILMENEKEVLGFSLRYHPFARYISKIDYKYFNNTLDIDNLKDKDEFSLPCVVMSVTE 1008

Query: 1007 KKTRKGSRIGWVTFSEP 1023
              T+K + +  +   + 
Sbjct: 1009 STTKKNTPMLTLKVIDL 1025


>gi|27904720|ref|NP_777846.1| DNA polymerase III alpha subunit [Buchnera aphidicola str. Bp
            (Baizongia pistaciae)]
 gi|46395824|sp|Q89AN8|DPO3A_BUCBP RecName: Full=DNA polymerase III subunit alpha
 gi|27904117|gb|AAO26951.1| DNA polymerase III alpha subunit [Buchnera aphidicola str. Bp
            (Baizongia pistaciae)]
          Length = 1077

 Score =  955 bits (2468), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1046 (36%), Positives = 596/1046 (56%), Gaps = 38/1046 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS +S+++G +  N +         PAIAITD++NL   ++F +   + GI+PI
Sbjct: 6    FVHLRVHSDFSMIDGLVKPNILAQHAKKLNMPAIAITDSSNLHGMIKFYRATFSQGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-SV 129
            IG    +   D    +N           I LL     GY+ L+ L+SR Y +    +  V
Sbjct: 66   IGVDFKVFPDDKYVSSNM-------FTKITLLAVNNSGYRNLLLLLSRAYKIGYNNKVGV 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   WL E   +G+I+L+GG  G I      N+  +    L  + + F +  Y+ + R 
Sbjct: 119  FITKEWLVE-HRKGIILLSGGCYGDIGVNLLNNNKSLVLNCLSFYNRFFENFYYLEIMRI 177

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247
             R  +    S++  ++    +P+VATN   FL+++D+E H + + +    T+ S      
Sbjct: 178  GRSNEEQYISRIKDISAREGIPVVATNEVCFLNKQDFEVHKIRVFINLGCTIKSNSAHYN 237

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             TP  +++  +EM  +F D P+A+ NT+EI++RC+ IL+ +   LP+F     +      
Sbjct: 238  YTPQQFMRTSNEMEELFLDFPDAISNTIEISKRCNVILKFNKYFLPKFQTGNMNTT---- 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFI 364
             + L  KA  G++ RL Q    K     +   Y  RL  ELNVI +M F GYFLIV +FI
Sbjct: 294  -DFLVMKAKKGMQKRLIQLFPNKQDRINNVNRYYTRLLSELNVINKMGFPGYFLIVMEFI 352

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAKKN+IPVGPGRGSGAGS+ +Y L IT++DPL F LLFERFLNP+R+ MPD D+DFC 
Sbjct: 353  NWAKKNDIPVGPGRGSGAGSLVSYVLNITELDPLSFDLLFERFLNPERVFMPDLDVDFCM 412

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D+RD+VI +V   YG E V+QII+FG+L AK+ +RDVGR    PY  ++RL KLIP D  
Sbjct: 413  DKRDKVIEHVSKIYGEESVSQIISFGTLTAKSVIRDVGRVFGFPYGFLNRLSKLIPLDLG 472

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +AI+      E    D  V  L+ I+++LEG+ R+ S HA G+VI  + ++  VP
Sbjct: 473  MTLE-KAISQKVELLELYKFDKDVRELINIAKRLEGITRNVSKHAGGVVISPKKITDFVP 531

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLS 599
            +Y D   + PVTQF+   I   GL+KFDFLGLKTLT++  ++  +  +         +++
Sbjct: 532  LYYDENGNNPVTQFDKNDIGYTGLVKFDFLGLKTLTVIHGTVKMINTKFSNNQKKLININ 591

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I   D   +  L T  T+ +FQLES+GM+  +  ++PD  ED++ALV+L+RPGP+ + +
Sbjct: 592  TISLKDKNCFKFLQTAQTIAVFQLESNGMKDLIRRLKPDSFEDLVALVALFRPGPLQSGM 651

Query: 660  --VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
               + NRK+GKEKI+       H L+ P+LK T G+I+YQEQVM+I Q+ + Y+L  AD+
Sbjct: 652  VDNFINRKHGKEKILYPNKECQHALLKPILKSTYGIILYQEQVMKIVQVFANYTLGHADL 711

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRR M KK + EM+K +E F +GA +N I+  ++  IF LL +FA Y FNKSH+ +YA++
Sbjct: 712  LRRTMEKKDQVEMNKHREMFKNGAKENNINTKLSTKIFNLLEQFAGYAFNKSHSVSYALV 771

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQT W+K +YP EF+A++M  ++DN++KI     + +   ++I+PP+VN     FKV D
Sbjct: 772  SYQTLWLKLYYPEEFMASAMNADIDNIKKIVVLINECKVMKLKIIPPNVNQSDYYFKVDD 831

Query: 833  NRI-YYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            ++   Y L AIKG+G +    I+ A  ++  F  L D C  V+SK++  +V+E L+ +G 
Sbjct: 832  DKNIIYGLGAIKGIGKSVILDIVNARKNRKRFSELFDLCVSVNSKRITHKVIEKLIMSGG 891

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             DCFG +R  L+ S + I K A    K+   K  ++F      F+          +  S+
Sbjct: 892  CDCFGLNRSILMHSCEYIIKSANQYLKSIILKKRDLFGLLLDDFNVIKKKYYSIKKLYSM 951

Query: 951  R--FENEQRVLGFYFSGHPLDVYKPI-LRKMGIKGYEES-VATIRGNNIRLAAMVVSKQQ 1006
            +   + E+  LG Y +GHP+D +  + +R   +   ++     I    I +  M+   + 
Sbjct: 952  KQILDWEKDSLGLYLTGHPVDEHVHLQMRYNNVIRLKDLFNNKITTEQISILGMISFLKF 1011

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            K T+    + ++   +   + E   F
Sbjct: 1012 KVTKTKKNMVFMILEDSFVQIEVIIF 1037


>gi|302544658|ref|ZP_07297000.1| DNA polymerase III, alpha subunit [Streptomyces hygroscopicus ATCC
            53653]
 gi|302462276|gb|EFL25369.1| DNA polymerase III, alpha subunit [Streptomyces himastatinicus ATCC
            53653]
          Length = 1180

 Score =  955 bits (2468), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1068 (32%), Positives = 536/1068 (50%), Gaps = 55/1068 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL VH+ YSLL+GA  L ++           IA+TD  NL  A +F Q+A AA I P
Sbjct: 8    PFTHLHVHTQYSLLDGAARLKDMFKACQQMGMSHIAMTDHGNLHGAYDFFQQATAAAITP 67

Query: 70   IIGCQLDIDMQDN--LKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  +  +     +    G+        +         +  +   G   L  L S  
Sbjct: 68   IIGIEAYVAPESRRSKRKVRWGQPHQKRDDVSGSGGYTHKTIWAADRTGLHNLFRLSSDA 127

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF- 178
            Y     ++  R+    + E    GLI  TG  SG +           A K    ++ +F 
Sbjct: 128  YAHGWLQKWPRMDKEVIAE-HAAGLIASTGCPSGEVQTRLRLGQFDEALKAASAYQDIFG 186

Query: 179  GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             DR ++ L  H    +R     ++++     +P + TN+S +    + +AHD L+ +   
Sbjct: 187  RDRYFLELMDHGIEIERRVRDGLLEVGRKLGIPPLVTNDSHYTYAHESQAHDALLCIQTG 246

Query: 238  TVVSQKDRPRVTP-DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQV-HAPILP 293
              ++  DR R     +YLK+  EM +I S     E   NT+ +A +           ++P
Sbjct: 247  KSLAVADRFRFDGTGYYLKSADEMYAIDSSDAWQEGCRNTLLVAEQVDVTGWFAKRDLMP 306

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            RF   E       E    R +   G+  R   G        +D  +   +E++VI +M F
Sbjct: 307  RFDVPEG----YTEVTWFREEVRRGMARRFPGGV------PEDREKLAAYEMDVIIQMGF 356

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+VADFI WAK N I VGPGRGS AGS+ +YAL ITD+DP+   L+FERFLNP+R+
Sbjct: 357  PGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVSYALGITDLDPVEHGLIFERFLNPERV 416

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD DIDF + RR EVIRYV  KYG ++VA I T+G+++AK A++D  R L  PY+  D
Sbjct: 417  SMPDVDIDFDERRRGEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPYAMGD 476

Query: 474  RLCKLIPNDP-AHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRH 524
            R+ K +P D     + L  I D            R     DP V ++++ ++ +EGL R 
Sbjct: 477  RITKAMPADVFGKGIPLSGITDPEHPRYGEAGEVRSMYEGDPDVKKVIDTARGVEGLVRQ 536

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HAAG+++   P+   VP++      + +TQ++    E  GL+K DFLGL+ LT++  
Sbjct: 537  MGVHAAGVIMSSEPVVDHVPVWVRHTDGVTITQWDYPTCESLGLLKMDFLGLRNLTIMDD 596

Query: 585  SLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++  + A +G+ + L  +P DD  T+ LL    TLG+FQ + S MR  L  M+P   EDI
Sbjct: 597  AVKLVRANKGIDLKLLDLPLDDPTTFALLGRGDTLGVFQFDGSAMRSLLRLMKPSHFEDI 656

Query: 644  IALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVIIYQEQVMQ 697
             A+ +LYRPGP+     + Y  RKNG+++I  IHP     +  +L  T G+++YQEQV +
Sbjct: 657  TAVTALYRPGPMGMNSHINYALRKNGQQEITPIHPGVEDALKEVLDITYGLVVYQEQVQK 716

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
             AQ+L+GYSL +AD+LRRAMGKK +E +DK+   F  G    G S      ++++L  FA
Sbjct: 717  AAQVLAGYSLGQADLLRRAMGKKKQEVLDKEFIPFRDGCRARGYSDDAVQAVWDVLVPFA 776

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y +NK+HAAAYA++SY TA++K ++P E++AA +T   D+ +K   +  + R+  I+++
Sbjct: 777  GYAYNKAHAAAYALVSYWTAYLKANFPAEYMAALLTSVRDDKDKSAVYLNECRKMGIKVL 836

Query: 818  PPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSK 875
            PP VN    DF   GD+ I + L A++ VG      I+    A   + S  DF  +V++ 
Sbjct: 837  PPDVNESEADFTPRGDDTIVFGLTAVRNVGQNVVDSIIRRRRAAGRYASFPDFLDKVEAV 896

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
              N+R +ESL+ AG  D  G++R  L    + +      V++       ++F    G  S
Sbjct: 897  ACNKRTIESLIKAGGFDALGHTRKGLTARYEPMVDTVVAVKRKEAEGQFDLFGGGYGDGS 956

Query: 936  DKITLEKF--------SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                                 +     E+ +LG Y S HPL   + +L         +  
Sbjct: 957  GDGDSPALGLDVEFPDDEWEKAYLLAQEREMLGLYVSDHPLFGVEHLLSDRADAAIAQLT 1016

Query: 988  --ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G  + +  +V   Q+K T++G+     T  + A   +  FFP
Sbjct: 1017 GGEHADGAIVTIGGIVSGLQRKMTKQGNAWAIATVEDLAGSLDCLFFP 1064


>gi|160891291|ref|ZP_02072294.1| hypothetical protein BACUNI_03740 [Bacteroides uniformis ATCC 8492]
 gi|317481161|ref|ZP_07940236.1| DNA polymerase III [Bacteroides sp. 4_1_36]
 gi|156859512|gb|EDO52943.1| hypothetical protein BACUNI_03740 [Bacteroides uniformis ATCC 8492]
 gi|316902657|gb|EFV24536.1| DNA polymerase III [Bacteroides sp. 4_1_36]
          Length = 1265

 Score =  954 bits (2466), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1147 (31%), Positives = 570/1147 (49%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ------------------------------------KACAAGIQPIIGCQLDIDMQDNLK 84
                                                +A +   +PI+GC++ +       
Sbjct: 63   KGEIKDLKKRIAGIESGEIECEDKEAEIADCRAKMAEAESKLFKPIVGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +    +  + AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IVCSACIGGEVPKKIINDQLEEAEEAVRWYKNLFGDDYYLELQRHKATVPRANHEAYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   +++++LA  +++ ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  QKANAKLLELARKYDIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--------- 304
            +K ++EM ++F D+PEAL NT+EI  +  +    HAPI+P F   E    +         
Sbjct: 298  MKTKAEMNALFEDVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 357

Query: 305  --------------------------------------KEEENELRNKAVAGLEVRLAQG 326
                                                  K E + L   A  G +      
Sbjct: 358  KDLFDEFTQDENGKVVLDEDAANAKIKRLGGYDKLYRIKLEADYLAKLAFDGAKKLYGDP 417

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                   + + ++RL FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS 
Sbjct: 418  L------SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V  KYG E+VA 
Sbjct: 472  VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRLCKL+P+  P   ++L  AIA     + A  
Sbjct: 532  IITYGTMATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEA 591

Query: 504  A-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558
            + DP V   ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+
Sbjct: 592  SPDPLVRDTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL+++++++  +   RG+++D+  I   D  TY L     T
Sbjct: 652  EGSVIEDTGLIKMDFLGLKTLSIIKEAVANVRLHRGLELDIDKISISDPATYKLYCDGRT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPI 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FISG  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFISGGQ 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + 
Sbjct: 832  KNGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLA 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEA 856
            N+  I K   + +   I  + P VN   + F V       + L A+KGVG    + IME 
Sbjct: 892  NITDITKLMDECKAMGINTLGPDVNESNLKFTVNKEGNIRFGLGAVKGVGEGAVQSIMEE 951

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907
               + PF  + DF  RV+    N++ LE L  AG  D F    R Q           L+ 
Sbjct: 952  REKNGPFKGIFDFVQRVNLTACNKKNLECLALAGGFDSFPELKREQYFAVNSKNEVFLET 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         +      +   R   E+ ++G Y S HP
Sbjct: 1012 LVRYGNRYQADQAAAANSLFGGENVVDIATPEIPVAERWSDLDRLNRERDLVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  +L  +      E      + G  I +  +V + ++  ++ G+  G     + + 
Sbjct: 1072 LDEYSVVLEHVCNTHMTELEDKTALVGREITMGGIVTAVRRGISKNGNPYGIAKIEDYSG 1131

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1132 SAELPFF 1138


>gi|93006042|ref|YP_580479.1| DNA polymerase III, alpha subunit [Psychrobacter cryohalolentis K5]
 gi|92393720|gb|ABE74995.1| DNA polymerase III, alpha subunit [Psychrobacter cryohalolentis K5]
          Length = 1247

 Score =  954 bits (2466), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1065 (36%), Positives = 601/1065 (56%), Gaps = 70/1065 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +HS YS+ +  + +  ++   AAD Q A+A+TD +NL++ ++F +    AGI+P
Sbjct: 2    AFVHLGIHSEYSITDSIVRIKPLVKAAAADNQSALALTDLSNLYATVKFYRACLGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----G 125
            IIG ++ ++ +D                 + LL    EGYQ +  +VS  +   +     
Sbjct: 62   IIGSEVIMENED---------------TRLTLLAMNNEGYQNITRIVSLGFTEGRADPVN 106

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
              +  I  S +      G+I+L       + +A   +  + A++ L  ++  F DRLY  
Sbjct: 107  HGTPVIKRSHIL-AHAAGVIVLFT-EKSDVGQALIGSMPEKADELLTEWQAQFADRLYFA 164

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            ++R +R  +       +     H +P++A N+  FL ++D++AH+  + +A S V++ ++
Sbjct: 165  IKRTNRTGEDAFIKAAIHSGAKHHIPIIAHNDVRFLEQDDFDAHEARVCIAGSYVLADQN 224

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP+  +   YLK +++M  +F+D+P+ ++NT+ +A RC+  L +   +LP F   E +  
Sbjct: 225  RPQTYSDAQYLKTQAQMEQLFADIPQVIDNTLRLATRCNVSLTLGINVLPEFPVPEGE-- 282

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGY------HAQDYRQRLDFELNVIARMKFSGYF 357
                E+  R ++  GL+ RL +               Q Y  RL++EL VI  M F GYF
Sbjct: 283  --TTESFFRLESQRGLDNRLDKLFPVDARSDNWSDIRQRYDDRLEYELKVILSMGFPGYF 340

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLNP+R+SMPD
Sbjct: 341  LIVMDFIRWAKANGVPVGPGRGSGAGSLVAYALNITDLDPIHYDLLFERFLNPERVSMPD 400

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC + RD VI YV   YG E V+QIITFG++ AKA +RDV RA    Y    ++ K
Sbjct: 401  FDIDFCIEGRDRVIDYVAQTYGREAVSQIITFGTMAAKAVVRDVARAQSKSYFLASKMSK 460

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVD-----RLLEISQKLEGLYRHASTHAAGI 532
            LIP  P   +S QA+  + + ++      ++D      + E++ KLEG+ R+   HA G+
Sbjct: 461  LIPKTPGITLS-QALEQEPQLKDLISNPDNMDYEDAIEVWEMAIKLEGICRNVGKHAGGV 519

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            +I    ++    +Y D      V+QF+   +E  GL+KFDFLGL+ LT++  ++  +  R
Sbjct: 520  LIAPHRITDFSAIYCD-DEGHRVSQFDKDDVEAVGLVKFDFLGLRNLTVIDAAVRNINLR 578

Query: 593  GVKVD-----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
              K       L  +P DD + Y LL    T  +FQLES GM++ L  +QP  IED+IA+ 
Sbjct: 579  RAKEGKDALVLEDLPLDDAKAYKLLQDAKTTAVFQLESMGMKKYLAKLQPTNIEDVIAMC 638

Query: 648  SLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +LYRPGP+D  +V  Y +RK+G+E+++  HP ++P+L+ T GVI+YQEQVMQI+Q+++GY
Sbjct: 639  ALYRPGPLDAGMVEMYIDRKHGREEVIYDHPNLEPILENTNGVIVYQEQVMQISQVMAGY 698

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL  AD+LRRAMGKK  EEM KQ++ F++GA+  GI +  +  +F+L+ KFA YGFN+SH
Sbjct: 699  SLGGADMLRRAMGKKKPEEMAKQRDIFVTGATAQGIDEATSGGVFDLMEKFAGYGFNRSH 758

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTP 824
            +AAY V++YQTA++K +YP EF+AA +T +M+N + +  F  D R  F++ ++ PSVN  
Sbjct: 759  SAAYGVLAYQTAYLKQYYPAEFMAAVLTSDMNNTDNVVFFINDCRENFDLTVVNPSVNRS 818

Query: 825  CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVL 882
               F       I Y L AIKGVG      I++A   + PF  L DFC RVD KK+N+R L
Sbjct: 819  EWHFVADTPTNIIYGLGAIKGVGEGAVESIVDARRREGPFKDLYDFCRRVDIKKVNKRTL 878

Query: 883  ESLVFAGALDCFGYS-------------RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            E+LV AG  D F  +             R  L+  L +  + A+   +NR     ++F  
Sbjct: 879  EALVSAGCFDDFAATLRPDLPADEAYEIRGALMSQLPSAVQAAEQDRQNREIGMMDLFGE 938

Query: 930  EKG-TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESV 987
              G   +  + +    +     R + E+  LG Y +GHP+D Y+  L++       ++  
Sbjct: 939  MDGVVAAPPLVMTPELIWGDKHRLKAEKNTLGLYLTGHPIDEYRDELKRYTSGARLDKLT 998

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             T    +   A +++      TR       +T  +     E + +
Sbjct: 999  DTGYNGSCYFAGLIIDIANFGTRN-----VITLDDGTSRLEVSCY 1038


>gi|313886877|ref|ZP_07820581.1| DNA polymerase III, alpha subunit [Porphyromonas asaccharolytica
            PR426713P-I]
 gi|312923674|gb|EFR34479.1| DNA polymerase III, alpha subunit [Porphyromonas asaccharolytica
            PR426713P-I]
          Length = 1287

 Score =  954 bits (2466), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1115 (30%), Positives = 553/1115 (49%), Gaps = 104/1115 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-------C 63
            +V L VHS YS+L+G   +  ILDK  A   P IA+TD   ++    F+  A        
Sbjct: 32   YVPLHVHSHYSILDGMAPVEKILDKAVACGMPGIALTDHGAMYGIKNFTNYANDKINGDK 91

Query: 64   AAGIQ-----------------------------------PIIGCQLDIDMQ-------D 81
             A I+                                    I+GC++ +  +       D
Sbjct: 92   LAQIKSLRKQIKELEADASNADEIARIKGEIKTIEQSLFKAIVGCEVYVARRSLELKDKD 151

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 N  ++   +   ++LL    +GY+ LI++VS  +   +     RI    L E   
Sbjct: 152  AKDPDNPTRSIDRSGYHLILLAKNLQGYRNLIKMVSIAWEHGE-YYKPRIDKKLLSE-HH 209

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR------- 194
            EG+I  +    G I +         A K  L +K+ FG+  Y+ +  H   D        
Sbjct: 210  EGIIASSACLGGEIAQHILHGRLDEARKTALWYKETFGEDYYLEIMLHPNSDPLGGQETY 269

Query: 195  ----YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                    +V+++     + ++ATN++ FL+EED EAHD L+ +  ++ +S  +R R T 
Sbjct: 270  HKQLQVAQEVIKMGQELGIKVIATNDTHFLNEEDAEAHDHLICMTTNSPISDPNRMRYTK 329

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              +LK+  EM ++F+D P+ LENT+EI  +  +    HAP++P F   E       E++ 
Sbjct: 330  QEWLKSPEEMTALFADYPDVLENTLEICNKVEYYSIDHAPLMPHFELPEG---FASEDDY 386

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR+    G + R             + ++R+D EL VI  M F GYFL+V DFI  A++ 
Sbjct: 387  LRHLTYEGAKKRYGDPV------PPEVQERIDMELGVIQNMGFPGYFLVVQDFIAAARQL 440

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             + VGPGRGS AGS  AY L+IT I+P+++ LLFERFLNPDR+SMPD DIDF    R  V
Sbjct: 441  GVRVGPGRGSAAGSAVAYCLSITQIEPIKYGLLFERFLNPDRISMPDIDIDFDDKNRWRV 500

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN---DPAHPV 487
            + +V NKYG + V+ IIT  ++  K A++ V R  ++P  Q +RLCKLIP+   +    +
Sbjct: 501  LEWVTNKYGRDHVSNIITLTTMATKGAIKGVARVEELPLDQANRLCKLIPDRAPEGVKHL 560

Query: 488  SLQAI-ADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            +L  +  ++  FREA ++ +  +   +  +++LEG       HA G++I   P+S +VP+
Sbjct: 561  TLDWMVQNNQEFREASVSQNEQLANTIRYARQLEGTASTTGVHACGVIISGPPVSDVVPL 620

Query: 546  YRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
               +  D      V Q+  K IE  GLIK DFLGL+TL+++  +L  +     + +D+  
Sbjct: 621  STAIDPDTNERKLVAQYEGKVIEPTGLIKMDFLGLQTLSIINDALQNIKMSYGIDLDIDT 680

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD +T+ L +   T+G FQ ES GMR+ L+ ++P   +D++A+ +LYRPGP+DNI  
Sbjct: 681  IPVDDPKTFELYSRGDTVGTFQFESPGMRKYLQQLEPTEFKDLVAMNALYRPGPMDNIPT 740

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RK G+++I    P ++P LK+T G+ +YQEQVM ++++L  ++  ++D LR+AMGKK
Sbjct: 741  FIERKLGRQEITYDLPEMEPYLKDTYGITVYQEQVMILSRVLGDFTRGDSDSLRKAMGKK 800

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM K + +F+      G  +     I++   KFA Y FNKSH+  YA ++YQTA++K
Sbjct: 801  KEKEMAKYRIKFVENGVAKGHPRDTLERIYDGWQKFASYAFNKSHSVCYAWVAYQTAYLK 860

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSL 839
             HYP +F+AA +T      +K+ K+ ++ +   +++  P VN     F       I + L
Sbjct: 861  AHYPAQFMAALLTCNQSKSDKLTKYLEEVQHMGLEVKGPDVNESFTAFSANKEGVIRFGL 920

Query: 840  AAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
              I  VG + A  I++   +   +  + DF  R D    +RR LE+L+ +GA D FG  R
Sbjct: 921  GGISHVGLSVAEAIIQEREEHGAYQDVYDFFQRTDLSNCSRRALEALILSGAFDNFGIER 980

Query: 899  MQLLQ-----------------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
                                   L  + +Y + +E  RT    ++F     +      L 
Sbjct: 981  EVYFAPIAKSGVSSLSYGKDETFLTALMQYGKILESERTQVQASLFGDSDPSVKLPKPLP 1040

Query: 942  K--FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIRGNNIRL 997
                   +   R   EQ  +G Y S HPLD Y  I+  +      E    A +    +  
Sbjct: 1041 PKDVEPWSHLERLTKEQTYIGMYLSAHPLDPYAFIIENLCNCPASELDQFAELGLTQLTC 1100

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A +V   +Q  +++      +   + +   E   F
Sbjct: 1101 AGLVTKVRQGISKRNEPYAIIQIEDTSGTGEIPLF 1135


>gi|294647200|ref|ZP_06724799.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD CC
            2a]
 gi|294809189|ref|ZP_06767905.1| putative DNA polymerase III subunit alpha [Bacteroides xylanisolvens
            SD CC 1b]
 gi|292637487|gb|EFF55906.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD CC
            2a]
 gi|294443583|gb|EFG12334.1| putative DNA polymerase III subunit alpha [Bacteroides xylanisolvens
            SD CC 1b]
          Length = 1268

 Score =  954 bits (2465), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1142 (31%), Positives = 572/1142 (50%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMQNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   -------KACAAGI-----------------------------QPIIGCQLDIDMQDNLK 84
                   K   AGI                             +P+IGC++ +       
Sbjct: 63   KGEVKDLKKRIAGIEAGTIECADKEAEIATCKAKIVEAENKLFKPVIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDLKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ----- 199
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+        +     
Sbjct: 178  IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237

Query: 200  ------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A    + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKYLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE------ 307
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++        
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357

Query: 308  -------------------------------ENELRNKAVAG-LEVRLAQGAIAKGYH-- 333
                                            ++L    + G    +LA     + Y   
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
             +++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LSEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+  P   ++L  AI      + A  + DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R V+VD+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDICDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEAS-ADKP 861
            K   + +   IQ + P VN   + F V  +    + L A+KGVG      IME    + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVHSIMEERSKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              + ++     ++F  E         + +     +   R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQADKAAAFNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077

Query: 973  PILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      +    A + G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|288926043|ref|ZP_06419972.1| DNA polymerase III, alpha subunit [Prevotella buccae D17]
 gi|288337263|gb|EFC75620.1| DNA polymerase III, alpha subunit [Prevotella buccae D17]
          Length = 1240

 Score =  954 bits (2465), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1120 (31%), Positives = 546/1120 (48%), Gaps = 107/1120 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------ 63
             FVHL VH+ YS+L+G   + N++ K   D    +A+TD   +F   EF+          
Sbjct: 3    DFVHLHVHTYYSILDGQSKIANLVKKAVDDGMRGMALTDHGVMFGIKEFADICAGLNKER 62

Query: 64   ----AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                    +PI GC++ +    + K     +    +   +++L     GY+ LI+LVSR 
Sbjct: 63   KKEGKEPFKPIFGCEMYVAR--HRKEDKVKEHGDNSGYHLIVLAKNYNGYKNLIKLVSRS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++ D      R     L++   E LI+ +   +G +           A +    + ++FG
Sbjct: 121  WV-DGYYYRPRTDREDLEKYH-EDLIVCSACIAGEVPAKILKGDIAGAREACEWYHRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     +++ A  + + L+ TN+  F  +E  E
Sbjct: 179  DDYYLELQRHEVTDPTVLANRETYPLQQRANKVLIEFAKEYGIKLICTNDCHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    ++  +R R +   + K++ EM  IFSD+P+AL NT+EI  +  F   
Sbjct: 239  AHDHLLCLSTQADLNDPNRMRYSKQEWFKSKQEMNDIFSDIPDALTNTLEILDKVEFYSI 298

Query: 287  VHAPILPRFIEKECDDIQKE---------------------------------------- 306
             H PI+P F   E    +++                                        
Sbjct: 299  EHGPIMPFFPIPEDFGTEEQWRQKFSKEELYKEFTCDEKGENQLSPEDGQAVIDRLGGYD 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L   A  G +             +++ ++ +DFEL+V+  M F GYFLI
Sbjct: 359  KIYRIKFEADYLGKLAYDGAKKLYGD------PLSEEVKEHIDFELHVMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD 
Sbjct: 413  VQDFINAAREELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R  V+++V +KYGHE  A IIT+ S+  K +++DV R  ++P  + + LCK 
Sbjct: 473  DTDFDDDGRGRVLQWVMDKYGHENCAHIITYASMATKNSIKDVARVEKLPLERSNALCKA 532

Query: 479  IPN---DPAHPVSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP+   D A      AI      +EA ++ D      ++ ++ LEG  R    HA G +I
Sbjct: 533  IPDRLPDGAKMNLTNAIKYTPELQEAAVSIDERERNTIKYAKMLEGTVRGTGIHACGFII 592

Query: 535  GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+S  VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   +
Sbjct: 593  CRNPISDWVPISTADDPDFPDKKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVV 652

Query: 590  AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q     VDL  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +
Sbjct: 653  KQTTGDVVDLDNIPIDDELTYKLYQEGRTIGTFQFESAGMQKYLRELHPTVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E+D LR+AMGKK K  +D  K +FI    +NG    +   I+    KFA Y FNKSHA  
Sbjct: 773  ESDALRKAMGKKKKAIVDAMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ ++YQTA++K HYP EF+AA MT     + +I K  ++ +  NI  + P VN     F
Sbjct: 833  YSWVAYQTAYLKAHYPAEFMAALMTRRFSQITEITKLMEECKSMNISTLGPDVNESYSGF 892

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V     I + L+AIKG+GT  A  I+ E   + P+  + DF  RVD   +NR+  ESL 
Sbjct: 893  GVNRKGEIRFGLSAIKGMGTAAAEAIVSEREKNGPYKDIFDFAQRVDYSCVNRKAFESLA 952

Query: 887  FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
             +G  D FG  R Q +         LD++ +Y Q  + ++     ++F            
Sbjct: 953  LSGGFDGFGLQREQYMGVNSKGEVFLDSLVRYGQRYQLDQQQATNSLFGGMDMVEIATPP 1012

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIRGN 993
            + K  V ++  +   E+ ++G Y S HPLD Y  IL+ +            +  A     
Sbjct: 1013 VPKGEVWSTIEKLNKERDLVGIYLSAHPLDEYTVILKSICNTKCMEVGRDSDKKALAERE 1072

Query: 994  NIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
             +    +V +  ++ + K     G+VT  +     E   F
Sbjct: 1073 ELTFGGIVTNVSERFSAKTNKPFGFVTIEDFDAPGELALF 1112


>gi|330814006|ref|YP_004358245.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter sp.
            IMCC9063]
 gi|327487101|gb|AEA81506.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter sp.
            IMCC9063]
          Length = 1140

 Score =  954 bits (2465), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/1040 (43%), Positives = 665/1040 (63%), Gaps = 29/1040 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++  F H +VH+ YS+ EGAL + ++     ++   ++ I+D+ N+   LEFSQ+   
Sbjct: 1    MPENNYFNHFKVHTQYSICEGALKIVDLAVHCTSNNVASVGISDSFNMCGVLEFSQEISK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG QPIIG Q++    +N             +  I L+     GY+ L++L S  YL  +
Sbjct: 61   AGCQPIIGTQINFSFSEN---------NLEKMGKISLVAKNDTGYKNLLKLSSSSYLSIE 111

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              +     +  L +  ++GLI+L G S   +      N+   +E  L   +K F   LY+
Sbjct: 112  KNEDPHCDIQELID-NSDGLIVLVGASHSLLSSLVLENNILDSELLLQKIQKFFEGNLYI 170

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QRH   +++  E+Q++  +    +P++AT+   +L ++ YEAHD  + V   T V+  
Sbjct: 171  EIQRHNEPHEQALETQLLYFSEKFSIPIIATHEVFYLKKDMYEAHDAYICVGQKTYVNDI 230

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R R + +HY K+  EM  +F DLPEALEN   +A RCS+      P+LP F  +     
Sbjct: 231  KRLRYSEEHYFKSDYEMSELFLDLPEALENNKNLALRCSYRPLTSKPMLPNFNTES---- 286

Query: 304  QKEEENELRNKAVAGLEVRLAQ-------GAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                 +EL+  A  GLE RL             +    Q Y++RL++E+ +I++MKFSGY
Sbjct: 287  -SNVNDELKINANKGLEDRLKNFILINIADEDQRLATKQVYKERLNYEIEMISKMKFSGY 345

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV+D+I+WAK NNIPVGPGRGSGAGS+ A+ L+ITD+DP++F L+FERFLNPDR+SMP
Sbjct: 346  FLIVSDYIKWAKSNNIPVGPGRGSGAGSLVAWCLSITDLDPIKFGLIFERFLNPDRISMP 405

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFCQ+ RD+VI YV++KY   +VAQIITFG LQA+ ALRD+GR + +PY +VD+L 
Sbjct: 406  DFDIDFCQEDRDKVINYVKDKY-KNKVAQIITFGKLQARMALRDIGRVIGLPYGRVDQLS 464

Query: 477  KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K+IP DP+ P++L +++A + R +EA+  DP++++L+ ++ KLEGL+R+ +THAAGIVIG
Sbjct: 465  KMIPFDPSRPLTLAESVAMEPRLQEAQKEDPTIEKLINLALKLEGLFRNIATHAAGIVIG 524

Query: 536  DRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            D+ L+++VP+Y+D  S +P  VTQF+M W E+AGL+KFDFLGLKTLT+++K+++ + +  
Sbjct: 525  DKNLTEIVPLYKDHDSSIPIPVTQFDMNWSEQAGLVKFDFLGLKTLTVIKKTIELIEKDS 584

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             K+D+  IP DD +T+ LL++  T+GIFQLES+GMR+ L+ M P+  EDIIALV+LYRPG
Sbjct: 585  QKLDIEKIPLDDSKTFELLSSGETMGIFQLESAGMREVLKQMIPNKFEDIIALVALYRPG 644

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+ NI  YNNRK+G E+   +HP I+ +LKET GVIIYQEQVMQIAQ LSG+S  +AD+L
Sbjct: 645  PMQNIPSYNNRKHGLEEPDYLHPKIENILKETYGVIIYQEQVMQIAQALSGFSAGKADIL 704

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+AMGKK   EMD+QK+ FI GA KN I K  AV IF+L+ KFA YGFNKSHAAAYA+I+
Sbjct: 705  RKAMGKKKSAEMDRQKKDFIEGAIKNDIPKEQAVYIFQLVEKFAQYGFNKSHAAAYALIA 764

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++KTHYP+ F +ASM++EM N +K+ +F ++ ++ +I++  P +N    DF   D 
Sbjct: 765  YQTAYLKTHYPLSFFSASMSMEMSNTDKLNQFYEELKRLSIKVHNPCINHCFADFVPKDG 824

Query: 834  RIYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I+Y+L+ IK VG     + I E   +  F S+EDF  RV SK +N+  LE L+ AGA D
Sbjct: 825  TIFYALSGIKAVGFEAISNVIKEREENGKFLSMEDFLKRVSSKDINKLQLEGLIKAGAFD 884

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C   +R +L +++  I K ++  ++N      N+F  +      KI        +   + 
Sbjct: 885  CIDKNRSKLYENVPEIIKQSKSYDENLQVDQINLFESQTNDNF-KINFTVHPAWDEPEKI 943

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E   +GF+ S HPL  YK IL    +  ++        N   L+  V++ Q+KKT KG
Sbjct: 944  KREFESIGFFVSEHPLKNYKHILDNYSVVQFQSFSDNKNINECMLSGTVMAIQEKKTAKG 1003

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
                 V FS+ ++ +E   F
Sbjct: 1004 MPFAIVKFSDLSRMFEFFIF 1023


>gi|38234155|ref|NP_939922.1| DNA polymerase III subunit alpha [Corynebacterium diphtheriae NCTC
            13129]
 gi|38200417|emb|CAE50105.1| DNA polymerase III alpha subunit [Corynebacterium diphtheriae]
          Length = 1186

 Score =  954 bits (2465), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/1070 (30%), Positives = 531/1070 (49%), Gaps = 49/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  SFVHL  H+ YS+L+G   ++ + +++     PA+ +TD  N+F +  F +   A
Sbjct: 1    MAKKSSFVHLHNHTEYSMLDGMAKVDMLAEEVVRQGMPAVGMTDHGNMFGSDAFYRAMKA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIG +  +     L                 +         +L    EG   L  
Sbjct: 61   AGVKPIIGIEAYMAPGSRLHKERVRWGEPHQKSDDVSASGAYLHQTMLAENVEGLHNLFY 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E    G+I  TG  SG +           A +    +
Sbjct: 121  LSSMASYEGQLGKWPRMDAELIAE-HATGIIATTGCPSGDVQTRLRLGQFDQALEAAAMW 179

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++  +  ++ L  H    +    S+++++    +LP + TN+  ++ E    AH+ ++
Sbjct: 180  QDIYGKENYFLELMDHGLEIENRVRSELLEIGRKLDLPPLVTNDCHYVLESQAPAHEAML 239

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAP 290
             V     +S  DR +     +Y+K   +M   +  L P+A +NT+ IA R     ++  P
Sbjct: 240  CVQTGKTLSDPDRFKFDGSGYYIKTAEQMRETWDSLVPQACDNTLWIAERVQDYGEIWEP 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +            + LR++   GL +R   GA+      Q+Y +R +FE++VI  
Sbjct: 300  HPHDRMPIADVPEGHTPTSWLRHEVHEGLRMRFNGGAV-----PQNYLERAEFEIDVIDM 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLNP
Sbjct: 355  KGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHGLLFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468
            +R S PD DIDF   RR E+IRY   ++G +++AQ+ITFG+++ K AL+D  R    Q  
Sbjct: 415  ERPSAPDIDIDFDDRRRGEMIRYAAQRWGEDKIAQVITFGTVKTKQALKDSARVQYGQEG 474

Query: 469  YSQVDRLCK-LIPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y   DR+ K L P   A  + L  I D            R     DP V ++ + ++ LE
Sbjct: 475  YKMADRITKELPPAIMAKDIPLSGIMDPEHPRYGEAGEVRHLIETDPDVRKIYDTARGLE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++   PL + +PM++       +T +     E  GL+K DFLGL+ L
Sbjct: 535  GVVRQAGVHACAVIMASVPLLEHIPMWKRANDGALITGWPYPACEAIGLLKMDFLGLRNL 594

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++   L+ +   R  ++DL  +  DD   Y LL++  TLG+FQL+S GM++ L+ MQP 
Sbjct: 595  TVIGDCLENIKINRNEELDLEALQTDDPNVYKLLSSGDTLGVFQLDSGGMQELLKRMQPT 654

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQ 692
               DI+A ++LYRPGP+  +    Y +RKNG++ I  IHP ++     +L+ET G+I+YQ
Sbjct: 655  GFNDIVASLALYRPGPMGVNAHWDYADRKNGRKPIEPIHPELEEPLKEILEETYGLIVYQ 714

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQ+M+I++ L+ Y+  EAD  R+AMGKK  E + K+ ++F  G   NG SK     ++  
Sbjct: 715  EQIMEISRKLANYTAGEADGFRKAMGKKKPEVLAKEYKKFSEGMFSNGYSKAAVDALWGT 774

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA Y FNKSHAA Y ++SY TA++K +Y  E++AA +T   D  +K   +  + R  
Sbjct: 775  IEPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVADKKDKSAIYLSNCRHL 834

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
            +I ++ P VN   ++F      I + L A++ VG      I++A  +   F    D+  +
Sbjct: 835  DISVLSPDVNESHLNFMPVGEDIRFGLGAVRNVGEDVVAAIIKAREEKGAFTDFSDYLDK 894

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            +D    N+RV ESL+ AGA D   + R  LL   ++        +K       ++FA   
Sbjct: 895  IDITACNKRVTESLIKAGAFDSMDHPRKGLLLIHEDAVDAVTSTKKAADKGQFDLFAGLG 954

Query: 932  GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
                +      + +      +   +   E+ +LG Y SGHPLD Y+  L           
Sbjct: 955  ADAEEVNNVFAVQIPDAQ-WDKKHQLALEREMLGLYVSGHPLDGYEEALEAQTDTPLTTI 1013

Query: 987  V--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
            +      G  + +  ++    ++ ++K GS    VT  +    + +   F
Sbjct: 1014 LSGELRNGAEVTIGGIISGVDRRYSKKDGSPWAIVTVEDHHGAQVDLLVF 1063


>gi|294055954|ref|YP_003549612.1| DNA polymerase III, alpha subunit [Coraliomargarita akajimensis DSM
            45221]
 gi|293615287|gb|ADE55442.1| DNA polymerase III, alpha subunit [Coraliomargarita akajimensis DSM
            45221]
          Length = 1243

 Score =  953 bits (2464), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1094 (34%), Positives = 574/1094 (52%), Gaps = 72/1094 (6%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            EK   FVHL VH+ +SLL+G   ++ +  + A     A++ITD   L+    F ++A   
Sbjct: 3    EKDREFVHLHVHTDHSLLDGCSRVDRLCSRAAELGMKALSITDHGVLYGLTSFFKQAEKH 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+P++GC++ +  ++ L   N+ +        + LL     GYQ L ++VS+ +     
Sbjct: 63   GIKPLLGCEIYLVYEEKLAEVNELR-AKQKSRHMGLLARNFTGYQNLCKIVSKAHTQG-F 120

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV- 184
             ++ R  L  L    +EGLI  +G  +  I +    +  + A +    F  +FG   ++ 
Sbjct: 121  YRNPRTDLETLA-AHSEGLIGFSGCLAAVIPQYLLEDKFEEAREAAAKFIDIFGKEFFII 179

Query: 185  NLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L  H   ++ +    ++++A   +L +VATN+  ++++ D++ HD ++ +     V+ +
Sbjct: 180  ELMDHGIPEQRKIIPGLLKIATEFDLKVVATNDVHYVNDADWQPHDSMLCIQTGAKVADE 239

Query: 244  DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R R      YLK+R EM   F ++PEA+ NT  IA  C   L       P +      D
Sbjct: 240  KRMRYDAQQFYLKSREEMDLAFKEVPEAITNTSGIAEMCEVKLPFGVDHYPVYERPIEID 299

Query: 303  IQKEEEN---------------------------------------ELRNKAVAGLEVRL 323
               + EN                                        L     AGL  R 
Sbjct: 300  SGSDHENFERVLDIYVEKKNEILVRDGKDPIELNAETRAKHKSNGLYLFELCKAGLNERY 359

Query: 324  AQGAIAKGYHAQD-------YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                 A      +       Y ++L++EL +IA   F  YFLIV DFI WA++++IPVGP
Sbjct: 360  GTNYDACRADWDNSSEADKRYCEQLEYELAIIAGTGFVDYFLIVWDFINWAREHDIPVGP 419

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAG + AY L ITDIDPL F LLFER LN +R+S PDFD+DFC  RRD V+ YV++
Sbjct: 420  GRGSGAGCLVAYVLKITDIDPLSFGLLFERMLNLERVSPPDFDVDFCMRRRDLVVNYVRD 479

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            KYG +RVA IITFG+  AK  +RD+ R   + +S+ ++L K+IP++    +   ++    
Sbjct: 480  KYGKDRVANIITFGTFGAKMVVRDLARVNDIEFSEANKLAKMIPDELNISLD-DSVKKSP 538

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
              ++    +P    ++E  + +EG+ R+   HA G++I D+ ++ L+P+   ++     T
Sbjct: 539  ELQQELKVNPVAQTIIEQGRVIEGMVRNTGKHACGVIIADQDITNLIPV--TLQEGDLTT 596

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--QRGVKVDLSLIPFDDHETYHLLTT 614
            Q+     E  GL+K DFLGLKTLT++  +   +   +R    D+  +   D  TY LL +
Sbjct: 597  QYPKGPSEDLGLLKMDFLGLKTLTVIDDAQTNVRNTRRMPDFDIEKVSLKDQPTYDLLNS 656

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
              T  +FQLES GM+Q    +     E+IIAL++LYRPGP+  I  +   K     +   
Sbjct: 657  GRTTAVFQLESGGMQQLCRQIGLSSFEEIIALIALYRPGPMQFIPQFIEGKKDPSTVQIP 716

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            HPL+  +++ET GV++YQEQVMQ AQ+++GY+L  AD+LRRAMGKKIKE MD QK+ FI 
Sbjct: 717  HPLLKDLVQETYGVLVYQEQVMQSAQIIAGYTLGGADILRRAMGKKIKEVMDAQKQVFID 776

Query: 735  GASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            GA   N I +  A +IF LL KFA YGFNKSH+AAYA++SY+TA++K +YPVEF+AA +T
Sbjct: 777  GAKATNNIDRKTAESIFALLEKFAQYGFNKSHSAAYAMLSYRTAFLKANYPVEFMAAVLT 836

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI----YYSLAAIKGVGTTT 849
             E  N +K+  F ++    N+ ++ P VN     F    N       + +AAIKGVG   
Sbjct: 837  SEQGNADKLSNFLEECNAMNVPVLSPDVNASGATFTPIINGDESSIRFGMAAIKGVGEGA 896

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A  I+E    D P++S  DF +R   K +NRRV+E+L+  GA D  G+ R  LL  LD  
Sbjct: 897  ALVIIEERDKDGPYESFTDFITRSSDKAVNRRVIEALIKTGAFDSLGHDRAHLLHDLDAE 956

Query: 909  QKYAQWVEKNRTNKHENIF---AHEKGTFSDKI---TLEKFSVENSSVRFENEQRVLGFY 962
               A    K+R     ++F    ++ G   +     T  K      + + ++E+ +LGFY
Sbjct: 957  LAEADSRRKDREAGQASLFDMLGNDAGIAEEDQTRKTPPKIPEMPMAEKLQHEKDLLGFY 1016

Query: 963  FSGHPLDVYKPI-LRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSR-IGWVT 1019
             SGHP+D Y  + +     +  ++           RL  +V + Q K TRK SR +    
Sbjct: 1017 ISGHPMDAYAGLDMAIDSFQNADDLKRNFDDRQTYRLGGIVSNLQIKYTRKDSRQMAVFN 1076

Query: 1020 FSEPAKEYEANFFP 1033
             +   + YE   FP
Sbjct: 1077 VATRTQNYELIMFP 1090


>gi|302345204|ref|YP_003813557.1| putative DNA polymerase III subunit alpha [Prevotella melaninogenica
            ATCC 25845]
 gi|302149818|gb|ADK96080.1| putative DNA polymerase III subunit alpha [Prevotella melaninogenica
            ATCC 25845]
          Length = 1239

 Score =  953 bits (2464), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1120 (31%), Positives = 545/1120 (48%), Gaps = 107/1120 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA----- 64
             +VHL VH++YS+L+G   +  ++DK  AD    +AITD   +F   EF+          
Sbjct: 3    DYVHLHVHTNYSILDGQSKVTRLVDKAIADGMKGMAITDHGVMFGIKEFADYCAKVNKGR 62

Query: 65   -----AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                    +PI GC++ +  +              +   +++L     GY+ LI+LVS  
Sbjct: 63   KEKGEEPFKPIFGCEMYVARRTMHDKDKS--MHDNSGYHLIVLAKNYTGYKNLIKLVSNA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++ D      R     L++   EGLI+ T   +G +      +  + A +    + ++FG
Sbjct: 121  WV-DGYYYRPRTDREQLEKYH-EGLIVCTACIAGEVPNKIIHDDIEGAREACEWYHRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     +++ A  + + +V TN+  F  +E  E
Sbjct: 179  DDFYLELQRHEVKDPSLVANREAYPLQQKANKVLMKFAQEYGIKIVCTNDCHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++ +  +    R R +   + K R+EM  IFSD+PEA+ NT+EI  +      
Sbjct: 239  AHDHLLCLSTNEDLDDPKRMRYSKQEWFKTRAEMNEIFSDIPEAMTNTLEILNKVETYDI 298

Query: 287  VHAPILPRFIEKEC-------------DDIQKE--------------------------- 306
             H PI+P F   E              +D+ KE                           
Sbjct: 299  NHGPIMPFFPIPEDFGTEEEWKKKFTEEDLYKEFTTDENGENPLPPEEGQKVIDRLGGYE 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L   A  G +             + + +  + FEL+V+  M F GYFLI
Sbjct: 359  KMYRIKFEADYLAKLAYDGAKKLYGD------PLSDEVKNHIRFELHVMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A++  ++ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD 
Sbjct: 413  VQDFINAARQELDVMVGPGRGSAAGSVVAYCLGITQIDPLKYDLLFERFLNPDRVNLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R  V+++V +KYGHE  A IIT+ ++  K +++DV R  ++P    + LCK 
Sbjct: 473  DTDFDDDGRGRVLQWVMDKYGHENCAHIITYSTMATKNSIKDVARVEKLPVDVSNALCKA 532

Query: 479  IPNDPAHPVSL---QAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVI 534
            IP    + + +    AI      + A +++   +R  ++ ++ LEG  R    HA G +I
Sbjct: 533  IPERLPNGMKMNLTNAIKCTPELQNAEVSEDIRERNTIKYAKMLEGTVRGTGIHACGFII 592

Query: 535  GDRPLSQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+ + VP+      D     +PVTQ++   IE  GLIK DFLGLKTL+ L+++   +
Sbjct: 593  CRNPIDEWVPISTATDPDFPEKKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVV 652

Query: 590  AQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q RG  +DL  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +
Sbjct: 653  KQTRGDVIDLEKIPIDDELTYQLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK+    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPDFIKRKHDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E+D LR+AMGKK+K  +DK K +FI    +NG    I   I+    KFA Y FNKSHA  
Sbjct: 773  ESDALRKAMGKKMKAIVDKMKPKFIKQGQENGHDPQILEKIWSDWEKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ ++YQTA+MK HYP E++AA MT     + +I K  ++ +   I  + P VN   + F
Sbjct: 833  YSWVAYQTAYMKAHYPAEYMAALMTRRFSQITEITKLMEECKALKIATLGPDVNESQIGF 892

Query: 829  KVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V     I + L+AIKG+G + A  I+     + P+  + DF  RVD   +NR+  ESL 
Sbjct: 893  GVNKHGEIRFGLSAIKGMGASAADSIVRERMENGPYKDIYDFAERVDLSNVNRKAFESLA 952

Query: 887  FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            ++G  D FG  R Q           LD I +Y Q  +  +  +  ++F            
Sbjct: 953  YSGGFDSFGLQREQYFAVTAKGDLFLDTIVRYGQLFQAEKAQQQNSLFGGMDAIDVVHPI 1012

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIRGN 993
              K        +   E+ ++G Y S HPLD Y  +L  M                  + +
Sbjct: 1013 APKAEKWPVIEKLNKERELVGIYLSAHPLDEYSVVLNNMCNTRCSMIGRNANMTELAKAD 1072

Query: 994  NIRLAAMVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032
             +    +V S  ++ + + G   G+VT  +     E   F
Sbjct: 1073 EVTFGGIVTSVNERFSQKTGKPFGFVTIEDFEGTGELALF 1112


>gi|255693699|ref|ZP_05417374.1| putative DNA polymerase III alpha subunit [Bacteroides finegoldii DSM
            17565]
 gi|260620516|gb|EEX43387.1| putative DNA polymerase III alpha subunit [Bacteroides finegoldii DSM
            17565]
          Length = 1268

 Score =  953 bits (2463), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1142 (31%), Positives = 576/1142 (50%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ------------------------------------KACAAGIQPIIGCQLDIDMQDNLK 84
                                                +A +   +PIIGC++ +       
Sbjct: 63   KGEVKDLKKRIAGIEAGTIECEDKEAEIADCKAKIVEAESKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +      +   +++L    +GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDLREGKLDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ----- 199
            I+ +    G I +    +    AE+ +  +K LFGD  Y+ +QRH+        +     
Sbjct: 178  IVCSACLGGEIPKRITNDQFAEAEEAIQWYKNLFGDDFYLEMQRHKATVPRANHECYPMQ 237

Query: 200  ------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A  + + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VKVNKYLMEYAQKYNIKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE------ 307
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++E       
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRAKFTE 357

Query: 308  -------------------------------ENELRNKAVAG-LEVRLAQGAIAKGYH-- 333
                                            ++L    + G    +LA     + Y   
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
             +++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LSEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+  P   ++L  AIA     + A  + DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEASSDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R ++VD+  I  +D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRAIEVDVDQIDINDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEAS-ADKP 861
            K   + +   IQ + P VN   + F V  +    + L A+KGVG    + IME    + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNRDGNIRFGLGAVKGVGEAAVQSIMEEREKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FTGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              + ++     ++F  E         + +     +   R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077

Query: 973  PILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      +    A + G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLEHVCNTRMADLEDKAALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|212693673|ref|ZP_03301801.1| hypothetical protein BACDOR_03193 [Bacteroides dorei DSM 17855]
 gi|237708836|ref|ZP_04539317.1| DNA polymerase III alpha subunit [Bacteroides sp. 9_1_42FAA]
 gi|237724269|ref|ZP_04554750.1| DNA polymerase III alpha subunit [Bacteroides sp. D4]
 gi|265755905|ref|ZP_06090372.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_33FAA]
 gi|212663785|gb|EEB24359.1| hypothetical protein BACDOR_03193 [Bacteroides dorei DSM 17855]
 gi|229437457|gb|EEO47534.1| DNA polymerase III alpha subunit [Bacteroides dorei 5_1_36/D4]
 gi|229457262|gb|EEO62983.1| DNA polymerase III alpha subunit [Bacteroides sp. 9_1_42FAA]
 gi|263233983|gb|EEZ19584.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_33FAA]
          Length = 1265

 Score =  953 bits (2463), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1147 (30%), Positives = 576/1147 (50%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59
             FVHL VH+ YS+L+G  S+  ++DK  AD    IA+TD  ++F   EF           
Sbjct: 3    DFVHLHVHTQYSILDGQASIPRLVDKAMADGMKGIAVTDHGDMFGIKEFFNYVNKKNSST 62

Query: 60   -----------------------------------QKACAAGIQPIIGCQLDIDMQDNLK 84
                                               + A     +PI GC++ +      +
Sbjct: 63   NGEIKDLKKRIAGLEKGTVECDNPEAELVACKEKLEAAKRKLFKPIFGCEMYVA---RRR 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            + N+   P  +   +V+L    +GY  LI+LVS+ +         R     L++   EGL
Sbjct: 120  LFNKEGKPDQSGYHLVVLAKNEKGYHNLIKLVSKAWTEG-FYMRPRTDRVELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-----------YD 193
            I+ T   +G + R       + AE+ +  +K++FGD  Y+ LQRH+              
Sbjct: 178  IVCTACIAGEVPRNIIAGKYEEAEEAIQWYKRVFGDDFYLELQRHKATVPRANHEAYKLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +    ++++ +    + LV TN+  F+ EE+ EAHD L+ ++    +   +R   +   +
Sbjct: 238  QIANEKLIEYSRKFNVKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYSKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--------- 304
            +K R+EM  +F+D+PEAL NTV+I  +  F    HAPI+P F   E    +         
Sbjct: 298  MKTRAEMNEVFADVPEALSNTVDICDQVEFYSIDHAPIMPTFAIPEDFGTEEGYRKKYTE 357

Query: 305  --------------------------------------KEEENELRNKAVAGLEVRLAQG 326
                                                  K E + L+  A+ G   R  + 
Sbjct: 358  KDLFDEFTQDENGNVVMSEEAAKAKIEKLGGYDKLYRIKLEADYLKKLALEGAHKRYGE- 416

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                    ++ ++R+ FEL+++  M F GYFLIV DFI+ A++  ++ VGPGRGS AGS 
Sbjct: 417  -----VLNEEVQERIKFELHIMKTMGFPGYFLIVQDFIRAAREELDVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+ + LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA 
Sbjct: 472  VAYCLGITKIDPIAYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRLCKL+P+  P   ++L  AIA     + A +
Sbjct: 532  IITYGTMATKLAIKDVARVQKLPLSESDRLCKLVPDKIPDKKMNLTNAIAYVPELQAAEV 591

Query: 504  A-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558
            + DP +   ++ ++ LEG  R+   HA G +I    ++  VP+     ++    + VTQ+
Sbjct: 592  SPDPILRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL++++++++ +   +G+ +D+  +   D  TY L +   T
Sbjct: 652  EGSVIEDTGLIKMDFLGLKTLSIIKEAIENIKHSKGIILDIDEVDISDPPTYALYSEGRT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  ++P   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELEPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPI 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGR 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA+M+  + 
Sbjct: 832  KNGHDPKVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAATMSRNIS 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEA 856
            N+ +I K   +++   I    P VN   + F V       + L AIKGVG +  + I+E 
Sbjct: 892  NITEITKLMDESKATGIMTKGPDVNESYLKFSVNRKGDIRFGLGAIKGVGESAVQSILEE 951

Query: 857  SA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL-------QSLDN 907
               +  +  + DF  RV+    NR+ +E+L  AGA D F G  R              + 
Sbjct: 952  RERNGEYKDIFDFVQRVNLSACNRKNIENLALAGAFDSFTGIKREDFFVKNAKDETFTEV 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         +          R   E+ ++G Y S HP
Sbjct: 1012 LVRYGNKYQMDKAAAANSLFGGENQVDIATPEIIPSPAWGDLERLNKERDLVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  IL  +      E      ++  ++ +  +V + ++  T+ G   G     + + 
Sbjct: 1072 LDEYAVILENVCNVHMAELADLTPLQNRDLTMGGIVSAVREGYTKTGKPYGIAKVEDYSG 1131

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1132 SAEFAFF 1138


>gi|300858796|ref|YP_003783779.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis
            FRC41]
 gi|300686250|gb|ADK29172.1| DNA polymerase III alpha subunit [Corynebacterium pseudotuberculosis
            FRC41]
 gi|302206501|gb|ADL10843.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis
            C231]
 gi|302331056|gb|ADL21250.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis
            1002]
 gi|308276743|gb|ADO26642.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis
            I19]
          Length = 1186

 Score =  953 bits (2463), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/1070 (31%), Positives = 538/1070 (50%), Gaps = 49/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  SFVHL  H+ YS+L+G   ++ + +++     PA+ +TD  N+F +  F +    
Sbjct: 1    MAKKSSFVHLHNHTEYSMLDGMAKVDMLAEEVLRQGMPAVGMTDHGNMFGSDAFYRTMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIG +  +        T              +         +L   AEG + L  
Sbjct: 61   AGVKPIIGIEAYMAPDSRFNKTRVRWGEPHQKSDDVSASGAYLHQTMLAENAEGLRNLFY 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E    G+I  TG  SG +           A +    +
Sbjct: 121  LSSMASYEGQLGKWPRMDADLIAE-HASGIIATTGCPSGDVQTRLRLGQFDQALEAAAMW 179

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++  +  ++ L  H    +    S+++++    +LP + TN+  ++ E    AH+ ++
Sbjct: 180  QDIYGKENYFLELMDHGLEIENRVRSELLEIGRKLDLPPLVTNDCHYVLESQAPAHEAML 239

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAP 290
             V     +S  DR +     +Y+K   +M  ++  L PEA +NT+ IA R     ++   
Sbjct: 240  CVQTGKTLSDPDRFKFDGSGYYIKTAEQMREMWDSLVPEACDNTLWIAERVQDYGEIWEE 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +            + LR++ + GL VR   G +      Q Y  R ++E++VI  
Sbjct: 300  HTHDRMPIADVPEGHTPTSWLRHEVLEGLRVRFNGGEV-----PQSYIDRAEYEISVIDM 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLNP
Sbjct: 355  KGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHDLLFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468
            +R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K A++D  R    Q  
Sbjct: 415  ERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQAIKDSARVQYGQPG 474

Query: 469  YSQVDRLCK-LIPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y   DR+ K L P   A  + L  I D            R     DP V ++ + ++ LE
Sbjct: 475  YQIADRITKELPPAIMAKDIPLSGIMDPEHPRYGEAGEVRNLIETDPDVKKIYDTARGLE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++   PL + +PM++       +T +     E  GL+K DFLGL+ L
Sbjct: 535  GVVRQAGVHACAVIMASVPLLEHIPMWKRAADGALITGWPYPACEAIGLLKMDFLGLRNL 594

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++   ++ +   R   VDL  +  DD + Y LL++  TLG+FQL+S GM++ L+ MQP 
Sbjct: 595  TVIGDCIENIKINRKETVDLEELTTDDPKVYELLSSGDTLGVFQLDSGGMQELLKRMQPT 654

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQ 692
               DI+A ++LYRPGP+  +    Y +RKNG++ I  IHP +D     +L ET G+I+YQ
Sbjct: 655  GFHDIVASLALYRPGPMGVNAHWDYADRKNGRKPIEPIHPELDEPLREILDETYGLIVYQ 714

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + KQ ++F+ G   NG SK     ++  
Sbjct: 715  EQIMRISQKVANYTAGEADGFRKAMGKKQPEVLAKQYDKFLEGMLSNGYSKGAVDALWGT 774

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA Y FNKSHAA Y ++SY TA++K +Y  E++AA +T   D  +K   +  + R  
Sbjct: 775  IEPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVADKKDKSAIYLSNCRHL 834

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
             I ++ P VN   ++F    N I + L A++ VG      I++A  +   F    D+  +
Sbjct: 835  GISVLSPDVNESRLNFLPVGNDIRFGLGAVRNVGEDVVNSIVKARQEKGGFSDFSDYLDK 894

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            +D+   N+RV ESL+ AGA D  G+ R  LL   ++        +K       ++FA   
Sbjct: 895  IDTVACNKRVTESLIKAGAFDSLGHPRKGLLLIHEDAVDSVISTKKAADKGQFDLFAGFG 954

Query: 932  GTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            G  +       + + +    +   +   E+ +LG Y SGHPLD Y+  L           
Sbjct: 955  GDDASMGNAFAVQIPEAQ-WDRKHQLALEREMLGLYVSGHPLDGYEEALDAQTDTQLTTI 1013

Query: 987  VA--TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
            +A     G  +++  ++ S  ++ ++K GS    VT  +    + +   F
Sbjct: 1014 LAGELRNGAEVQIGGIISSVDRRYSKKDGSPWAIVTIEDHHGAQVDLLVF 1063


>gi|18251957|gb|AAL66178.1|AF459434_1 DNA polymerase III alpha subunit [Saccharomonospora phage PIS 136]
          Length = 1206

 Score =  953 bits (2463), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/1069 (32%), Positives = 544/1069 (50%), Gaps = 58/1069 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ +S+L+GA  +  + D+      PA+A+TD  N+F A EF Q++   GI+P
Sbjct: 68   SFVHLHVHTEFSMLDGAAKMKPLFDEATRLGMPAVAMTDHGNMFGAYEFFQQSKKTGIKP 127

Query: 70   IIGCQLDIDMQDNLKMT-----------------NQGKTPFPTVPSIVLLVSTAEGYQRL 112
            IIG +  +  +                           +       + +L   A G + L
Sbjct: 128  IIGIEAYVAPESRHHKKPVFWGHHGQRGADEFGEGGDVSGAGAYTHMTMLARNATGLRNL 187

Query: 113  IELV-SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
             +L  SR +     K   R+    + E   EG+I  TG  SG +         + A +  
Sbjct: 188  FKLSYSRAWRATTAK--PRMDRDLIAE-HAEGIIATTGCPSGEVQTRLRLGQPKEALQAA 244

Query: 172  LTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              F+ +F  +  ++ L  H    +R     ++ +A    L  VATN+S +++++  +AH 
Sbjct: 245  SDFRDIFGPENFFLELMDHGLPIERSVREGLLDIAKQLGLRPVATNDSHYVTQDQADAHS 304

Query: 230  VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQV 287
             L+ V     ++  +R +   D +YLK+ +EM + +  ++P A +NT+ IA        V
Sbjct: 305  ALLCVQSGKTLNDPNRFKFDGDGYYLKSAAEMRAYWDTEVPGAADNTLLIASMVESYDDV 364

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
             AP     + +      K +E  LR +    +  R   G        Q YR +L++EL V
Sbjct: 365  FAPTNR--MPQAKIVPGKTDEQVLREEIEQFIPTRFPDGM------PQKYRDQLEWELEV 416

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I    ++ YFL+V D ++WAK N I VGPGRGS AG++ +Y L I DIDPL+  L+FERF
Sbjct: 417  IIGKGYASYFLVVGDLVRWAKNNGIRVGPGRGSAAGALLSYILHIIDIDPLKHGLIFERF 476

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL-- 465
            LNP+R S PD DIDF + RRDEVI Y +NKYG E  A++IT+G+++ KAA +D  R    
Sbjct: 477  LNPERESPPDIDIDFDERRRDEVIEYAKNKYGSEYFAKVITYGTIKTKAAFKDAARVHLG 536

Query: 466  QMPYSQVDRLCKLIPNDPA---------HPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            Q  +S  DR  K +P   A              +  A+ +  R    +DP V ++ + ++
Sbjct: 537  QAGFSVADRFSKALPPPVAAKDIPLSGIMDPEHERYAEAAEVRSLIESDPEVSKIFDTAR 596

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             LEGL R+A  HA   +I   PL  ++P+++       +T ++    E  GL+K D LGL
Sbjct: 597  GLEGLIRNAGVHACAHIISREPLLDVLPLWQR-EDGAIITGWDGPQCEGVGLLKIDILGL 655

Query: 577  KTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
              +T +  +   +    GV++D   +P DD  T+ +L    +LG+FQLE  GM+  L+ M
Sbjct: 656  VNMTTIDDTARMVKANHGVEIDPLALPMDDATTFDMLGRGESLGVFQLEGGGMQALLKRM 715

Query: 636  QPDCIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVI 689
            QP   EDI+A V+LYRPGP+D    + Y +RKNG++K+  IHP ++     +L ET G+I
Sbjct: 716  QPTTFEDIVACVALYRPGPMDVDAHLHYADRKNGRQKVSPIHPELEEPLAEILSETYGLI 775

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQ+MQIAQ ++ Y+L +AD LRRAMGKK KE ++K+   F  G   NG S      +
Sbjct: 776  VYQEQIMQIAQKVANYTLGQADTLRRAMGKKKKEVLEKEFAVFEEGMKANGFSGEAIKAL 835

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++ +  FA Y FNKSHAAAY +I+Y TA++K +YP E++AA +T   D  +K   +  + 
Sbjct: 836  WDTILPFAGYAFNKSHAAAYGLITYWTAYLKANYPAEYMAALLTANADKKDKSAVYLAEC 895

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDF 868
            R+  ++++PP VN   V F   D  I + L AI+ VG   A  I+     +  F    DF
Sbjct: 896  RRMGLKVLPPDVNDSAVQFSATDGNIRFGLGAIRNVGAGVAETIIRDREKEGRFTGFADF 955

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             ++      ++RV+ESL+ AGA D  G++R  L    ++  +    ++K +     ++F 
Sbjct: 956  LTKASPSVCSKRVVESLIKAGAFDDLGHTRKALFIVHEDAVEVMSALKKQQAAGQFDLFG 1015

Query: 929  HEKGTFSDKITLE----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                   +   L             +    E+ +LG Y + HPLD  + +LRK   K   
Sbjct: 1016 AAPQPMEESSPLAHLKYDPEEWPPKILLSFEREMLGLYVTAHPLDGAEHLLRKWAPKPIA 1075

Query: 985  ES-VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   +   I ++ +V S +++  +KG      T  +     E  FF
Sbjct: 1076 TLVHDAPKEGEITISGLVTSVERRLNKKGEPWAICTIEDLDASIEVLFF 1124


>gi|153808691|ref|ZP_01961359.1| hypothetical protein BACCAC_02990 [Bacteroides caccae ATCC 43185]
 gi|149128517|gb|EDM19735.1| hypothetical protein BACCAC_02990 [Bacteroides caccae ATCC 43185]
          Length = 1268

 Score =  953 bits (2463), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1142 (31%), Positives = 574/1142 (50%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMQNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +PIIGC++ +       
Sbjct: 63   KGEIKDLKKRLVGIEAGSIECEDKEAEVAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +      +   +++L     GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDLKEGKQDQSGYHLIVLAKNETGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ----- 199
            ++ +    G I +    +    AE+ +  +K LFGD  Y+ +QRH+        +     
Sbjct: 178  MVCSACLGGEIPKRITNDQFAEAEEAIQWYKNLFGDDFYLEMQRHKATVPRANHECYPLQ 237

Query: 200  ------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ +    + LV TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VKVNKYLMEYSKKFNVKLVCTNDVHFVDEENAEAHDRLICLSTGKDMDDPTRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE------ 307
            +K R EM  +F+D+PEAL NT+E+  +  +    HAPI+P F   E    ++E       
Sbjct: 298  MKTREEMNELFADVPEALSNTLELLDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRQKFTE 357

Query: 308  -------------------------------ENELRNKAVAG-LEVRLAQGAIAKGYH-- 333
                                            ++L    + G    +LA     + Y   
Sbjct: 358  KDLYDEFTQDEHGNVVLSEEDGKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
              ++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+  P   ++L  AI      + A  + DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R +++D+  I  +D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRSLEIDVDQIDINDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEAS-ADKP 861
            K   + +   IQ + P VN   + F V  +    + L A+KGVG    + IME    + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVQSIMEERKKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q   +       L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAANSKGELFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              + ++     ++F  E         + +     +   R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077

Query: 973  PILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      E    A + G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLEHVCNTRMSELEDKAALAGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|25028585|ref|NP_738639.1| DNA polymerase III subunit alpha [Corynebacterium efficiens YS-314]
 gi|23493870|dbj|BAC18839.1| putative DNA polymerase III alpha subunit [Corynebacterium efficiens
            YS-314]
          Length = 1204

 Score =  952 bits (2462), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/1072 (30%), Positives = 538/1072 (50%), Gaps = 49/1072 (4%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             + K  SFVHL  H+ YS+L+G   ++ + D++   Q PA+ ITD  N++ +  F +K  
Sbjct: 16   RMAKQSSFVHLHNHTEYSMLDGMAKIDMLADEVNRQQMPAVGITDHGNMYGSNAFYRKMT 75

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLI 113
             AG++PIIG +  +  +                    +         +L   A G + L 
Sbjct: 76   EAGVKPIIGIEAYLAPESRFNKERVRWGEPHQKSDDVSASGAYLHQTMLAENATGLRNLF 135

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L S      Q  +  R+    + E   EG+I  TG  SG +           A +    
Sbjct: 136  YLSSMASYEGQLGKWPRMDAEIIAERA-EGIIATTGCPSGDVQTRLRLGQFNEALEAAAM 194

Query: 174  FKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            ++ ++  D  ++ L  H    +    S+++++     LP + TN+  ++ E   +AH+ +
Sbjct: 195  WQDIYGRDNYFLELMDHGLDIENRVRSELLEIGRKLNLPPLVTNDCHYVLESQAQAHEAM 254

Query: 232  MAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHA 289
            + V     +  +DR +     +Y+K   +M S++ D +P+  +NT+ IA R     ++  
Sbjct: 255  LCVQTGKTLHDEDRFKFDGSGYYIKTAEQMRSLWDDTVPDGCDNTLWIAERVQDYGEIWE 314

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                  +            + L ++ +AGLE R     +      Q+Y +R ++E++VI 
Sbjct: 315  EHPHDRMPVADVPEGHTPTSWLHHEVMAGLEDRFPGQQV-----PQEYIERAEYEISVID 369

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLN
Sbjct: 370  MKGYPSYFLIVAEIIKHARSIGIWVGPGRGSAAGALVAYALTITNIDPIEHGLLFERFLN 429

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467
            P+R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K A++D  R    Q 
Sbjct: 430  PERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQAIKDSARVQFGQP 489

Query: 468  PYSQVDRLCK-LIPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKL 518
             Y   DR+ K L P   A  + L  I D            R     DP V ++ + ++ L
Sbjct: 490  GYQIADRITKVLPPPIMAKDIPLSGITDPEHERYNEAGEVRALIETDPDVRKIYDTARGL 549

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EG+ R A  HA  +++  +PL + +PM++       +T ++    E  GL+K DFLGL+ 
Sbjct: 550  EGVVRQAGVHACAVIMSSQPLLECIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRN 609

Query: 579  LTLLQKSLDFLA--QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            LT++  +++ +   + G  VDL  +  +D ETY LL+   TLGIFQL+  GM++ L+ MQ
Sbjct: 610  LTVIGDAIENIKANRDGKVVDLENLSIEDEETYKLLSRGETLGIFQLDGGGMQELLKRMQ 669

Query: 637  PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVII 690
            P    DI+A ++LYRPGP+  +    Y +RKNG++ I  IHP ++     +L ET G+I+
Sbjct: 670  PTGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEPLAEILGETYGLIV 729

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQ+M+I+Q ++ Y+  +AD  R+AMGKK  E + K+   F +G   NG S      ++
Sbjct: 730  YQEQIMKISQKVANYTAGQADGFRKAMGKKKPEVLAKEFAAFEAGMKANGFSADAIKTLW 789

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            + +  FA Y FNKSHAA Y ++S+ TA++K HY  E++AA +T   DN +K   +  D R
Sbjct: 790  DTILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKTAIYLADCR 849

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFC 869
               I+++ P +N   ++F      I Y L AI+ VG+     I+E       F    D+ 
Sbjct: 850  HLGIRVLSPDINESALNFMPVGTDIRYGLGAIRNVGSEVVDSIIETRQSKGMFRDFSDYL 909

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             ++D+   N+R+ ESL+ AGA D  G++R  L+   ++        +K       ++FA 
Sbjct: 910  DKIDTLPCNKRITESLIKAGAFDSLGHTRKGLMLVYEDAVDSVIATKKAADKGQFDLFAS 969

Query: 930  EKGTFSDKI-----TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                  D++             +       E+ +LG Y SGHPLD Y+  L         
Sbjct: 970  FGAEAEDEVGGFFQIAVPDDKWDRKHELALEREMLGLYVSGHPLDGYEDALAAQIDTPLT 1029

Query: 985  ESVA--TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
              +A     G  + +  ++    ++ ++K GS    VT  +      E   F
Sbjct: 1030 TIIAGELRHGAEVTVGGIISGVDRRFSKKDGSPWAIVTMEDHNGASVELLVF 1081


>gi|237750345|ref|ZP_04580825.1| DNA polymerase subunit III [Helicobacter bilis ATCC 43879]
 gi|229373875|gb|EEO24266.1| DNA polymerase subunit III [Helicobacter bilis ATCC 43879]
          Length = 1268

 Score =  952 bits (2461), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1082 (35%), Positives = 602/1082 (55%), Gaps = 73/1082 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL +H+ YSLL+GA  L+ +  +I      ++A+TD  N+F A+EF +    AGI+P
Sbjct: 8    PFTHLHLHTEYSLLDGANKLDVLAKRIKELGMNSVAMTDHGNMFGAIEFYKIMKKAGIKP 67

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  I  +++L      K+P      I L     EGY+ L+ L S+ ++     ++ 
Sbjct: 68   IIGIEAYIHNKEDLG----DKSPNTPKFHICLYAKNEEGYKNLMYLSSQSFIQG-FYRTS 122

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRA-----------------FFFNSSQVAEKRLL 172
            RI    L+E  ++G+I  +   +G I                            A++ + 
Sbjct: 123  RINKKILREY-SKGIICSSACLNGEISWNLNLSPYMDSKKRDKKIIMGAKGYDGAKEAIH 181

Query: 173  TFKKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             ++ +FGD  Y+ + RH   D+ + ++ +++L+      L+ATN++ + ++ED    +  
Sbjct: 182  EYQDIFGDDFYIEIMRHGIADQRFIDNDLLRLSLETGAKLIATNDAHYTNKEDSSMQEAA 241

Query: 232  MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            M +A +T ++   R R T  + Y+K+  +M+ +F D+PEA+ NT EIA +C   + +   
Sbjct: 242  MMIAMATDINDPKRLRHTVQEFYIKSPKQMLDLFMDIPEAVFNTQEIADKCDLTIDLKDD 301

Query: 291  ILPR----------FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
              P           + E E   IQ +E      K   GL  RL Q    K    + Y +R
Sbjct: 302  KNPPTPPSFKFAKEYAENEGLTIQ-DEAEYFAYKCKQGLVKRLEQVEKDKH---EIYHKR 357

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L  E+++I +MKF GY LIV DFI +AK+N IPVGPGRGS AGS+ AY L ITD+DP+++
Sbjct: 358  LQEEIDIITQMKFPGYMLIVWDFINYAKQNKIPVGPGRGSAAGSLVAYCLEITDVDPIKY 417

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            +LLFERFLNP+R+SMPD D DFCQ RR E+  Y++ KYG   VAQ+ITFG + A+  +RD
Sbjct: 418  NLLFERFLNPERISMPDIDTDFCQRRRPEMFEYMKAKYGEYNVAQVITFGKMLARGVIRD 477

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREAR-----LADP 506
            V R   M     DR  KLIP+     +            A   + + +E         D 
Sbjct: 478  VARIYGMSIPNADRFAKLIPSKLGITLKGYNKNGNFIEGAYELEPKIQELITEGDNDRDE 537

Query: 507  S----VDRLLEISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRS-DLPVTQFNM 560
                   ++ E++ +LE L R+   HAA +V+  ++ L   VP+Y   R+  + VTQ++M
Sbjct: 538  KNRGLARKVWEMALRLEKLNRNTGKHAAALVVDSEKELWHKVPLYVSERTKGVMVTQYSM 597

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLG 619
            K++E   LIKFDFLGLKTLT++Q +LD +     + ++LS +  +D + Y  L +  TLG
Sbjct: 598  KYLEPVDLIKFDFLGLKTLTVIQDALDIIKDTNNIDINLSTLDVNDEKVYRTLRSGNTLG 657

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL 677
            IFQLESSGM++    +QP  I+D IAL++L+RPGP+D+ +   Y NRK+G+  +      
Sbjct: 658  IFQLESSGMQEFNRRLQPSGIDDAIALLALFRPGPMDSGMSDEYINRKHGRSPVSYTFKE 717

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++P+LK T GVI+YQEQVMQI Q++ G+SL EAD++RRAMGKK  + M + + +F  GA 
Sbjct: 718  LEPILKNTYGVIVYQEQVMQIVQVIGGFSLGEADLVRRAMGKKDAQIMAENRTKFADGAE 777

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG  +T A  +F+ +AKFA+YGFNKSH+AAY ++++QTA++KT+Y  EF+AA ++ E  
Sbjct: 778  KNGFDRTKAEELFDQIAKFAEYGFNKSHSAAYGILTFQTAYLKTYYEHEFMAAMLSSESH 837

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARH 852
             +E +  +  +AR   I+I+PP VNT   +F V     G  +I + L AIKG G    + 
Sbjct: 838  KIEAVATYIDEARAMGIEILPPHVNTSQTNFSVIIDSNGKKKIVFGLNAIKGAGEGALQS 897

Query: 853  IMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I++       F +LEDF ++ D K+++++VLE LV +G+LD  GY+R  +L +LD I   
Sbjct: 898  IIDDRKQKGAFKNLEDFITKADFKRISKKVLEPLVKSGSLDNLGYTRASMLDNLDYICDL 957

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             + + + R+     +F  E+     ++ ++     ++    E E   LG Y SGHPLD +
Sbjct: 958  GRRMSRERSGG--GLFGAEE--LCPELQIKPLPELHNKSLLEYEYESLGIYLSGHPLDDF 1013

Query: 972  KPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            +  + ++  +    E      G+ + L   +   Q+K ++     G     + + +    
Sbjct: 1014 RSEIEQIKNVVKIAELENIADGSRVMLIGKLEDLQRKMSKNNRTYGTAKIMDFSGKQPLT 1073

Query: 1031 FF 1032
             F
Sbjct: 1074 LF 1075


>gi|259507641|ref|ZP_05750541.1| DNA polymerase III, alpha subunit [Corynebacterium efficiens YS-314]
 gi|259164820|gb|EEW49374.1| DNA polymerase III, alpha subunit [Corynebacterium efficiens YS-314]
          Length = 1188

 Score =  952 bits (2460), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/1071 (30%), Positives = 538/1071 (50%), Gaps = 49/1071 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  SFVHL  H+ YS+L+G   ++ + D++   Q PA+ ITD  N++ +  F +K   
Sbjct: 1    MAKQSSFVHLHNHTEYSMLDGMAKIDMLADEVNRQQMPAVGITDHGNMYGSNAFYRKMTE 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIG +  +  +                    +         +L   A G + L  
Sbjct: 61   AGVKPIIGIEAYLAPESRFNKERVRWGEPHQKSDDVSASGAYLHQTMLAENATGLRNLFY 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +           A +    +
Sbjct: 121  LSSMASYEGQLGKWPRMDAEIIAERA-EGIIATTGCPSGDVQTRLRLGQFNEALEAAAMW 179

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++  D  ++ L  H    +    S+++++     LP + TN+  ++ E   +AH+ ++
Sbjct: 180  QDIYGRDNYFLELMDHGLDIENRVRSELLEIGRKLNLPPLVTNDCHYVLESQAQAHEAML 239

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAP 290
             V     +  +DR +     +Y+K   +M S++ D +P+  +NT+ IA R     ++   
Sbjct: 240  CVQTGKTLHDEDRFKFDGSGYYIKTAEQMRSLWDDTVPDGCDNTLWIAERVQDYGEIWEE 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +            + L ++ +AGLE R     +      Q+Y +R ++E++VI  
Sbjct: 300  HPHDRMPVADVPEGHTPTSWLHHEVMAGLEDRFPGQQV-----PQEYIERAEYEISVIDM 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLNP
Sbjct: 355  KGYPSYFLIVAEIIKHARSIGIWVGPGRGSAAGALVAYALTITNIDPIEHGLLFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468
            +R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K A++D  R    Q  
Sbjct: 415  ERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQAIKDSARVQFGQPG 474

Query: 469  YSQVDRLCK-LIPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y   DR+ K L P   A  + L  I D            R     DP V ++ + ++ LE
Sbjct: 475  YQIADRITKVLPPPIMAKDIPLSGITDPEHERYNEAGEVRALIETDPDVRKIYDTARGLE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++  +PL + +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 535  GVVRQAGVHACAVIMSSQPLLECIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 594

Query: 580  TLLQKSLDFLA--QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            T++  +++ +   + G  VDL  +  +D ETY LL+   TLGIFQL+  GM++ L+ MQP
Sbjct: 595  TVIGDAIENIKANRDGKVVDLENLSIEDEETYKLLSRGETLGIFQLDGGGMQELLKRMQP 654

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIY 691
                DI+A ++LYRPGP+  +    Y +RKNG++ I  IHP ++     +L ET G+I+Y
Sbjct: 655  TGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEPLAEILGETYGLIVY 714

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQ+M+I+Q ++ Y+  +AD  R+AMGKK  E + K+   F +G   NG S      +++
Sbjct: 715  QEQIMKISQKVANYTAGQADGFRKAMGKKKPEVLAKEFAAFEAGMKANGFSADAIKTLWD 774

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  FA Y FNKSHAA Y ++S+ TA++K HY  E++AA +T   DN +K   +  D R 
Sbjct: 775  TILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKTAIYLADCRH 834

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCS 870
              I+++ P +N   ++F      I Y L AI+ VG+     I+E       F    D+  
Sbjct: 835  LGIRVLSPDINESALNFMPVGTDIRYGLGAIRNVGSEVVDSIIETRQSKGMFRDFSDYLD 894

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            ++D+   N+R+ ESL+ AGA D  G++R  L+   ++        +K       ++FA  
Sbjct: 895  KIDTLPCNKRITESLIKAGAFDSLGHTRKGLMLVYEDAVDSVIATKKAADKGQFDLFASF 954

Query: 931  KGTFSDKI-----TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                 D++             +       E+ +LG Y SGHPLD Y+  L          
Sbjct: 955  GAEAEDEVGGFFQIAVPDDKWDRKHELALEREMLGLYVSGHPLDGYEDALAAQIDTPLTT 1014

Query: 986  SVA--TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
             +A     G  + +  ++    ++ ++K GS    VT  +      E   F
Sbjct: 1015 IIAGELRHGAEVTVGGIISGVDRRFSKKDGSPWAIVTMEDHNGASVELLVF 1065


>gi|329961868|ref|ZP_08299882.1| DNA polymerase III, alpha subunit [Bacteroides fluxus YIT 12057]
 gi|328531308|gb|EGF58152.1| DNA polymerase III, alpha subunit [Bacteroides fluxus YIT 12057]
          Length = 1273

 Score =  951 bits (2459), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1147 (31%), Positives = 574/1147 (50%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+          
Sbjct: 11   DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 70

Query: 61   -------KACAAGI-----------------------------QPIIGCQLDIDMQDNLK 84
                   K   AGI                             +P+IGC++ +       
Sbjct: 71   KGEIKDLKKRIAGIESGEIECEDREAEIAGCRAKIAEAENKLFKPVIGCEMYVA---RRT 127

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVSR +         R   + L++   EGL
Sbjct: 128  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKG-YYMRPRTDRNELEKYH-EGL 185

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +    +  + AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 186  IVCSACIGGEVPKKIINDRLEEAEEAVRWYKNLFGDDYYLELQRHKATVQRANHEAYPLQ 245

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   +++++ A  + + ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 246  QKANAKLLEYARKYNIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 305

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K ++EM ++F D+PEAL NT+EI  +  +    HAPI+P F   E    ++E       
Sbjct: 306  MKTKAEMNALFEDVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEEFGTEEEYRAKYSE 365

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L   A  G   RL   
Sbjct: 366  KDLFDEFTQDENGKVVLDEEAAKAKIKRLGGYEKLYRIKLEADYLAKLAFDGA-KRLYGD 424

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
             +     + + ++RL FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS 
Sbjct: 425  PL-----SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSA 479

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V +KYG E+VA 
Sbjct: 480  VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTDKYGQEKVAH 539

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRL KL+P+  P   ++L  AIA     + A  
Sbjct: 540  IITYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEA 599

Query: 504  A-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558
            + DP V   L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+
Sbjct: 600  SPDPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 659

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL++++++++ +   RG+K+D+  I   D  TY L     T
Sbjct: 660  EGSVIEDTGLIKMDFLGLKTLSIIKEAVENVRLHRGLKLDIDKISITDPATYKLYCDGRT 719

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+
Sbjct: 720  IGTFQFESAGMQKYLRELQPGTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPI 779

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI+G  
Sbjct: 780  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQ 839

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + 
Sbjct: 840  KNGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLS 899

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEA 856
            N+  I K   + +   I  + P VN   + F V       + L A+KGVG    + IME 
Sbjct: 900  NITDITKLMDECKAMGINTLGPDVNESNLKFTVNKEGNIRFGLGAVKGVGEGAVQSIMEE 959

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907
               + P+  + DF  RV+    N++ +E L  AG  D F    R Q           ++ 
Sbjct: 960  REKNGPYKGIFDFVQRVNLNACNKKNIECLALAGGFDSFPELKREQYFAVNSKNEVFIET 1019

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         +      +   R   E+ ++G Y S HP
Sbjct: 1020 LVRYGNRYQADQAAAANSLFGGENVVDIATPEILPAERWSDLDRLNRERDLVGIYLSAHP 1079

Query: 968  LDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  +L  +      E      + G  I +  +V S ++  ++ G+  G     + + 
Sbjct: 1080 LDEYAVVLEHVCNTRMSEIEDKQALVGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSG 1139

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1140 SAEFPFF 1146


>gi|315606343|ref|ZP_07881359.1| DNA-directed DNA polymerase III alpha subunit [Prevotella buccae ATCC
            33574]
 gi|315252034|gb|EFU32007.1| DNA-directed DNA polymerase III alpha subunit [Prevotella buccae ATCC
            33574]
          Length = 1240

 Score =  951 bits (2459), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1120 (31%), Positives = 546/1120 (48%), Gaps = 107/1120 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------ 63
             FVHL VH+ YS+L+G   + N++ K   D    +A+TD   +F   EF+          
Sbjct: 3    DFVHLHVHTYYSILDGQSKIANLVKKAVDDGMRGMALTDHGVMFGIKEFADICAGLNKER 62

Query: 64   ----AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                    +PI GC++ +    + K     +    +   +++L     GY+ LI+LVSR 
Sbjct: 63   KKEGKEPFKPIFGCEMYVAR--HRKEDKVKEHGDNSGYHLIVLAKNYNGYKNLIKLVSRS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++ D      R     L++   E LI+ +   +G +           A +    + ++FG
Sbjct: 121  WV-DGYYYRPRTDREDLEKYH-EDLIVCSACIAGEVPAKILKGDIAGAREACEWYHRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     +++ A  + + L+ TN+  F  +E  E
Sbjct: 179  DDYYLELQRHEVTDPTVLANRETYPLQQRANKVLIEFAKEYGIKLICTNDCHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    ++  +R R +   + K++ EM  IFSD+P+AL NT+EI  +  F   
Sbjct: 239  AHDHLLCLSTQADLNDPNRMRYSKQEWFKSKQEMNDIFSDIPDALTNTLEILDKVEFYSI 298

Query: 287  VHAPILPRFIEKECDDIQKE---------------------------------------- 306
             H PI+P F   E    +++                                        
Sbjct: 299  EHGPIMPFFPIPEDFGTEEQWRQKFSKEELYKEFTCDEKGENQLSPEDGQAVIDRLGGYD 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L   A  G +             +++ ++ +DFEL+V+  M F GYFLI
Sbjct: 359  KIYRIKFEADYLGKLAYDGAKKLYGD------PLSEEVKEHIDFELHVMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD 
Sbjct: 413  VQDFINAAREKLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R  V+++V +KYGHE  A IIT+ S+  K +++DV R  ++P  + + LCK 
Sbjct: 473  DTDFDDDGRGRVLQWVMDKYGHENCAHIITYASMATKNSIKDVARVEKLPLERSNALCKA 532

Query: 479  IPN---DPAHPVSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP+   D A      AI      +EA ++ D      ++ ++ LEG  R    HA G +I
Sbjct: 533  IPDRLPDGAKMNLTNAIKYTPELQEAAVSIDERERNTIKYAKMLEGTVRGTGIHACGFII 592

Query: 535  GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+S  VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   +
Sbjct: 593  CRNPISDWVPISTADDPDFPDKKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVV 652

Query: 590  AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q     VDL  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +
Sbjct: 653  KQTTGDVVDLDNIPIDDELTYKLYQEGRTIGTFQFESAGMQKYLRELHPTVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E+D LR+AMGKK K  +D  K +FI    +NG    +   I+    KFA Y FNKSHA  
Sbjct: 773  ESDALRKAMGKKKKAIVDAMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ ++YQTA++K HYP EF+AA MT     + +I K  ++ +  NI  + P VN     F
Sbjct: 833  YSWVAYQTAYLKAHYPAEFMAALMTRRFSQITEITKLMEECKSMNISTLGPDVNESYSGF 892

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V     I + L+AIKG+GT  A  I+ E   + P+  + DF  RVD   +NR+  ESL 
Sbjct: 893  GVNRKGEIRFGLSAIKGMGTAAAEAIVSEREKNGPYKDIFDFAQRVDYSCVNRKAFESLA 952

Query: 887  FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
             +G  D FG  R Q +         LD++ +Y Q  + ++     ++F            
Sbjct: 953  LSGGFDGFGLQREQYMGVNSKGEVFLDSLVRYGQRYQLDQQQATNSLFGGMDMVEIATPP 1012

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIRGN 993
            + K  V ++  +   E+ ++G Y S HPLD Y  IL+ +            +  A     
Sbjct: 1013 VPKGEVWSTIEKLNKERDLVGIYLSAHPLDEYTVILKSICNTKCMEVGRDSDKKALAERE 1072

Query: 994  NIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
             +    +V +  ++ + K     G+VT  +     E   F
Sbjct: 1073 ELTFGGIVTNVSERFSAKTNKPFGFVTIEDFDVPGELALF 1112


>gi|29839841|ref|NP_828947.1| DNA polymerase III subunit alpha [Chlamydophila caviae GPIC]
 gi|29834188|gb|AAP04825.1| DNA polymerase III, alpha subunit [Chlamydophila caviae GPIC]
          Length = 1242

 Score =  951 bits (2459), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1077 (33%), Positives = 572/1077 (53%), Gaps = 60/1077 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+ + + K    Q P++A+TD  NL+ A+EF ++     I+P
Sbjct: 2    TWIPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECRQNDIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +          + K+       ++LL    +GY+ L  L S  +         
Sbjct: 62   IIGCEIYVAPTSRFDKKKERKSRVAN--HLILLCKNEQGYRNLCLLSSLAFTEG-FYYFP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +  +EGL+ L+   SG + +A    S +  EK LL ++ LFGD  Y  +Q H
Sbjct: 119  RIDRELLSQ-HSEGLVCLSACLSGSVAQAALE-SEEALEKDLLWYQNLFGDDFYSEIQLH 176

Query: 190  RGYDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +  +                            V+  +    +  VATN+  ++   D+ A
Sbjct: 177  KMSEEKIASLGEEWLKHEYHQFIEAQIKVNQAVLATSRRLGIRSVATNDIHYIHPNDWLA 236

Query: 228  HDVLMAVAHSTV----------VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+ V                + K +   + ++Y K+  EM  +F+D PE + NT+E+
Sbjct: 237  HEILLNVQIGETIRIAKQNTYIPNPKRKAFRSREYYFKSPEEMALLFADHPETISNTLEV 296

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQGAI- 328
            A +C+  L + +   P ++ +   + Q   E E        LR     GL  +     + 
Sbjct: 297  ADKCNLSLNLSSKHYPIYVPEFLKEKQTYTEEERYAASSTFLRELCEQGLFTKYTAEQLA 356

Query: 329  ------AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                        +  ++RL+ E+++I       Y LIV D I+WAK N IPVGPGRGSGA
Sbjct: 357  HISKKFPDRDPLELVKERLEMEMSIIIPKGMCDYLLIVWDIIRWAKDNGIPVGPGRGSGA 416

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + 
Sbjct: 417  GSVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDN 476

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            VAQIITFG+++AK A++DVGR L +P S+V+ + K IP    +    +A+  D    E  
Sbjct: 477  VAQIITFGTMKAKMAVKDVGRTLDVPLSKVNHIAKHIPEM--NTTLAKALETDPHLNELY 534

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
              D    ++L+++  LEG  R+   HAAG++I    L+  +P+     S +  TQF+MK 
Sbjct: 535  TNDSEAAQVLDMAMHLEGSIRNTGVHAAGVIICGDHLTNHIPICISKDSTMITTQFSMKP 594

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            +E  G++K DFLGLKTLT +  ++  +  + G  ++++ +P DD  T+ LL    T+GIF
Sbjct: 595  VESVGMLKVDFLGLKTLTSIHIAIQAIQKKTGKLLEMASLPLDDKTTFALLHQGKTMGIF 654

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            Q+ES GM++  + + PD  E+IIA+ +LYRPGP+D I  + +RK+GKE I   HPL++ +
Sbjct: 655  QMESKGMQELAKNLCPDSFEEIIAIGALYRPGPMDMIPSFISRKHGKEIIEYDHPLMESI 714

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  ++M +++ +F   A KNGI
Sbjct: 715  LKETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDIQQMLQERTKFCERACKNGI 774

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
               +A  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK
Sbjct: 775  DADLATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDSDDIEK 834

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK 860
            + K   +A   +I I+PP +N    +F   D  I +++ AI+G+G      I+E      
Sbjct: 835  VGKLIHEAHSMDICILPPDINESGTNFVATDKGIRFAMGAIRGIGKGLVESIVEEREKHG 894

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            P+ S++DF  R D KK+ ++  E+L+ AG  D F   R     +L+ +       +K   
Sbjct: 895  PYQSIQDFIQRSDLKKVTKKHTENLIDAGCFDVFESDRDVAQATLETLYDTISKEKKEAA 954

Query: 921  NKHENIFAHEKGTFSDKITLEKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                  F+        ++ L   +     +     + E+ +LG Y + HP+D  K IL +
Sbjct: 955  TGVMTFFSLNTMHQEHRVALPPATNVVRRSKKEILKKEKELLGIYLTEHPMDAVKDILPQ 1014

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033
            + +    E      G+ IR   ++     + + KG R    +  ++    YE   +P
Sbjct: 1015 LSVVNSGEFENLPHGSVIRTIFIIDKVTTRISSKGQRKFALLRVNDGVDSYELPIWP 1071


>gi|237785363|ref|YP_002906068.1| DNA polymerase III subunit alpha [Corynebacterium kroppenstedtii DSM
            44385]
 gi|237758275|gb|ACR17525.1| DNA polymerase III, alpha subunit [Corynebacterium kroppenstedtii DSM
            44385]
          Length = 1199

 Score =  951 bits (2459), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/1080 (30%), Positives = 538/1080 (49%), Gaps = 56/1080 (5%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +   +  S SFVHL  H+ YS+L+G   ++ ++D++     PA+ +TD  N+F +  F +
Sbjct: 4    MIANMANS-SFVHLHNHTEYSMLDGMAKVDLLVDEVKRQNMPAVGMTDHGNMFGSDAFYR 62

Query: 61   KACAAGIQPIIGCQLDIDMQDNL--KMTNQGK--------TPFPTVPSIVLLVSTAEGYQ 110
               A  I+PIIG +  +        K    G+        +         ++   A G +
Sbjct: 63   AMTANDIKPIIGVECYMAPDSRFNKKRVRWGEAHQKRDDVSASGAYLHQTMIAENATGLK 122

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L  L S      Q  +  R+    + E  +EG+I  T   SG +           A K 
Sbjct: 123  NLFYLSSMASYEGQLGKWPRMDAELIAE-HSEGIIATTACPSGEVQTRLRLGQFDEALKA 181

Query: 171  LLTFKKLF-GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
               ++ ++  D  ++ L  H    ++   ++++++     +P + TN+  +++++   +H
Sbjct: 182  AAKWQDIYGKDNYFLELMDHGIEIEQRVRNELLEIGRKLNIPPLVTNDCHYVTKDQARSH 241

Query: 229  DVLMAVAHSTVVSQK------DRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARR 280
            +V++ V   + +++       +R     D +YLK+  EM   + D +P   +NT+ IA R
Sbjct: 242  EVMLCVQTGSTMNEPTLDQGGNRFAFNGDGYYLKSAREMRDTWDDMVPGGCDNTLLIAER 301

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
                 ++  P     + K          + L ++   GL+ R     +      Q+Y  R
Sbjct: 302  VGDYSEIWEPHTHDRMPKYDVPEGYTPTSWLTHEVEQGLKKRFEGQPV-----PQEYTDR 356

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
              +E+ VI    +  YFL+VAD I+ A++  I VGPGRGS AGS+ AYALTIT+IDPL+ 
Sbjct: 357  AKYEIGVIDFKGYPSYFLVVADLIKHARRVGIRVGPGRGSAAGSLVAYALTITNIDPLQH 416

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNP+R S PD DIDF   RR E+IRY  + +G ++VAQ+ITFG+++ K AL+D
Sbjct: 417  GLLFERFLNPERPSAPDIDIDFDDRRRGEMIRYAADNWGEDKVAQVITFGTVKTKQALKD 476

Query: 461  VGRAL--QMPYSQVDRLCKLIP-NDPAHPVSLQAIADDS--------RFREARLADPSVD 509
              RA   Q  +   +R+ K +P    A  + L  I D            R+    DP V 
Sbjct: 477  SARAHFGQPGFQMAERITKALPAPIMAKDIPLSGIVDPEHPRYSEAAEVRQLIETDPDVK 536

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            ++ + ++ LEG+ R A  HA  +++   PL   +PM++  +    +T +     E  GL+
Sbjct: 537  KIFDTARGLEGVVRQAGVHACAVIMASVPLLDHIPMWKRAQDGAIITGWPYPACEAIGLL 596

Query: 570  KFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGL+ LT++   ++ + + RG  +DL  +   D  TY LL+   TLG+FQL+S GM
Sbjct: 597  KMDFLGLRNLTVIGDCIENIKENRGEDLDLEGLSVVDEPTYELLSRGDTLGVFQLDSGGM 656

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDP----ML 682
            R+ L+ M P    DI+A ++LYRPGP+       Y +RKNG+EKI  IHP ++     +L
Sbjct: 657  RELLKRMGPTEFSDIVAALALYRPGPMGEGAHWSYADRKNGREKITPIHPELEEPLRDIL 716

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
             ET G+I+YQEQ+M+I+Q ++ YS  +AD  R+AMGKK  E + K++  F +G  +NG S
Sbjct: 717  AETYGLIVYQEQIMKISQKVANYSAGQADSFRKAMGKKKPEVLAKERVSFEAGMKENGYS 776

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                  +++++  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K 
Sbjct: 777  DDAINTLWKVILPFAGYAFNKSHAAGYGLVSFWTAYLKANYTAEYMAALLTSVSDKKDKS 836

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKP 861
              +  D R   I ++ P VN+    F+     I + L A++ VG      I+        
Sbjct: 837  AIYLSDCRHLGIDVLSPDVNSSKYTFQSVGKDIRFGLGAVRNVGEDVVESIVSTRREKGA 896

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F    D+ +++D+   NRRV ESL+ AGA D  G+ R  L    ++        +K    
Sbjct: 897  FKDFTDYLNKIDTIACNRRVTESLIKAGAFDSMGHPRKGLYLIHEDAVDSVISTKKAADK 956

Query: 922  KHENIFAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
               ++FA   G   ++     I +      +   +   E+ +LG Y S HPLD Y+  L 
Sbjct: 957  GQFDLFAGLGGEAEEEDSAFSIEVPD-QEWDRKHKLALEREMLGLYVSEHPLDGYEETLA 1015

Query: 977  KMGIKGYEESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
                      +        +I +  ++ +  ++ ++K GS    VT  +      +   F
Sbjct: 1016 AQTDTPLTTVLSGELKDKQDIVIGGIISAVDRRFSKKDGSPWAIVTIEDHNGASVDILVF 1075


>gi|302525308|ref|ZP_07277650.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4]
 gi|302434203|gb|EFL06019.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4]
          Length = 1195

 Score =  951 bits (2458), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1084 (32%), Positives = 548/1084 (50%), Gaps = 71/1084 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             + SFVHL VH+ YS+L+GA  +  +  + A    PA+ +TD  N++   EF Q +   G
Sbjct: 2    SNDSFVHLHVHTEYSMLDGAAKIGPLFAEAARLGMPAVGMTDHGNMYGGDEFFQTSKKHG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAEGY 109
            I+PIIG +  +  +                           +       + ++   A G 
Sbjct: 62   IKPIIGIEAYVAPESRFHKKPVFWGQASQRGSDEFGEGGDVSGGGAYTHMTMVAGNATGL 121

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            + L +L S   +     +  R+    + E   EG+I  TG  SG +         + A +
Sbjct: 122  RNLFKLSSLASIQG-YYRKPRMDRELIAE-NAEGIIATTGCPSGEVQTRLRLGQREAAIQ 179

Query: 170  RLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                +K +F     Y+ L  H    +R     ++++    +LP +ATN+S +++++  + 
Sbjct: 180  AASDYKDIFGAGNFYLELMDHGLPIERSVREGLLEIGKLLDLPPLATNDSHYVTKDQADT 239

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFIL 285
            H  L+ V     ++   R +   D ++LK+  EM   +  ++P A +NT+ IA R     
Sbjct: 240  HSALLCVQAGKTLNDPTRFKFDGDGYFLKSAQEMREYWDKEVPGAADNTLLIAERVESYE 299

Query: 286  QV--HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
             V  H   +P F   E       E   LR++   GL+ R   G          Y +R D+
Sbjct: 300  DVYAHKDRMPVFDVPEG----HTEATWLRHQVAEGLKWRFPDGI------PDGYEERCDY 349

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            ELNVI    F  YFLIVAD IQ A++  I VGPGRGS AG++ AYAL IT++DP+   LL
Sbjct: 350  ELNVIEGKGFPAYFLIVADLIQHAREVGILVGPGRGSAAGALVAYALGITNLDPIPQKLL 409

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+RMSMPD DIDF   RR E+IRY  +KYG +RVAQ+ITFG+++ KAA++D  R
Sbjct: 410  FERFLNPERMSMPDIDIDFDDRRRGEMIRYATDKYGADRVAQVITFGTIKTKAAIKDSAR 469

Query: 464  AL--QMPYSQVDRLCKLIPND-PAHPVSLQAI--------ADDSRFREARLADPSVDRLL 512
                Q  YS  D++ K +P    A  + L  I        A+ +  R     D     + 
Sbjct: 470  VHFGQPGYSIADKISKALPPPIMAKDIPLSGIVDSKHERYAEAAEVRTLVETDEECKTIF 529

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            E ++ LEGL R+A  HA  +++   PL+  +P+++       +T ++    E  GL+K D
Sbjct: 530  ETARGLEGLIRNAGVHACAVIMSSEPLTDAIPVWQR-DDGSIITGWDYPSCEAIGLLKMD 588

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGL+ LT++  +L+ +   RG ++DL  + FDD E Y LL    TLG+FQL+   MR  
Sbjct: 589  FLGLRNLTVIGDALENIKANRGEEIDLDRLGFDDPEAYKLLGRGDTLGVFQLDGGAMRDL 648

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLID----PMLKET 685
            L  M P   EDIIA+++LYRPGP+       Y +RKN +++I  IHP ++     +L ET
Sbjct: 649  LRRMLPTGFEDIIAVLALYRPGPMGMNAHNDYADRKNNRQQIKPIHPQLEEPLREILSET 708

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS-----KNG 740
             G+I+YQEQ+MQIAQ ++GY++  AD LRRAMGKK KE ++K+ E F  G       + G
Sbjct: 709  YGLIVYQEQIMQIAQKVAGYTMGRADTLRRAMGKKKKEVLEKEYEGFEEGMKSSPLVEGG 768

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             S      +++ +  FA Y FNKSHAAAY +I+Y TA++K +Y  E++AA +T   DN +
Sbjct: 769  FSPEAVKALWDTILPFAGYAFNKSHAAAYGLIAYWTAYLKANYTAEYMAALLTSVGDNKD 828

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD- 859
            K   +  + R+  I+++PP VN   + F    N I + L A++ VG      I++   + 
Sbjct: 829  KSAIYLSECRRLGIKVLPPDVNESALRFAAVGNDIRFGLGAVRNVGANVVESIIKTREEK 888

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
              + S  DF  + +    N+RV+ESL+ AGA D  G++R+ ++Q  ++  +    +++  
Sbjct: 889  GKYSSFTDFLDKSELVACNKRVIESLIKAGAFDSMGHTRLSMIQVHEDAVEAVVPLKRQE 948

Query: 920  TNKHENIFAHEKGTFSDKITLE----------KFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 ++F    G                                E+ +LG Y S HPLD
Sbjct: 949  AMGQFDLFGSFGGGDDAAEAAPSSSPLAHLKFGEEEYPRKQLLAYEREMLGLYVSAHPLD 1008

Query: 970  VYKPILRKMGIKGYEESVAT-IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
              + ILRK   K     +A   +   + ++ ++ S +++  +KG      T  +     E
Sbjct: 1009 GAERILRKHAPKPIAALLADPPKEGEVVISGLLTSLERRVNKKGEPWAICTVEDMDAAIE 1068

Query: 1029 ANFF 1032
              FF
Sbjct: 1069 VLFF 1072


>gi|325860343|ref|ZP_08173463.1| DNA polymerase III, alpha subunit [Prevotella denticola CRIS 18C-A]
 gi|325482149|gb|EGC85162.1| DNA polymerase III, alpha subunit [Prevotella denticola CRIS 18C-A]
          Length = 1239

 Score =  951 bits (2458), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/1114 (31%), Positives = 544/1114 (48%), Gaps = 95/1114 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA----- 64
             +VHL VH+ YS+L+G   +  ++DK  AD    +A+TD   +F   EFS          
Sbjct: 3    DYVHLHVHTDYSVLDGQSKVTRLVDKAVADGMKGMAVTDHGVMFGIKEFSDYCAKVNKGR 62

Query: 65   -----AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                 A  +P+ GC++ +  +              +   +++L     GY+ LI+LVS+ 
Sbjct: 63   KEKGEAPFKPVFGCEMYVARRTMHDKDKS--MHDNSGYHLIVLAKNYHGYKNLIKLVSKA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++ D      R     L++   E LI+ +   +G I      +  + A +    + ++FG
Sbjct: 121  WV-DGYYYKPRTDREQLEKYH-EDLIVCSACIAGEIPNKIIHDDIEGAREACEWYHRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     +++ A  + + ++ TN+  F  +E  E
Sbjct: 179  DDFYLELQRHEVKDPTLVANREAYPLQQKANKVLLRFAEEYGIKVICTNDCHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++ +  +    R R +   + K R EM  +FSD+PEAL NT+EI  +      
Sbjct: 239  AHDHLLCLSTNEDLDDPKRMRYSKQEWFKTRQEMNEVFSDIPEALTNTLEILDKVEIYSI 298

Query: 287  VHAPILPRFIEKECDDIQKE-----EENELRNK------------AVAGLEVRLAQGAIA 329
             H PI+P F   E    ++E      E++L  +            A  G +V    G   
Sbjct: 299  DHGPIMPFFPIPEDFGTEEEWRKKFSEDDLYREFTTDENGEHPLPAEEGQKVIRRLGGYE 358

Query: 330  KGYH------------------------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            K Y                         + + +  + FEL+V+  M F GYFLIV DFI 
Sbjct: 359  KIYRIKFEADYLAKLAYDGAGKLYGDPLSDEVKSHIRFELHVMKTMGFPGYFLIVQDFIN 418

Query: 366  WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF  
Sbjct: 419  AAREKLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDTDFDD 478

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D R +V+++V +KYGHE  A IIT+ ++  K ++RDV R  ++     + LCK IP+   
Sbjct: 479  DGRGKVLQWVMDKYGHENCAHIITYSTMATKNSIRDVARVEKLSLDVSNGLCKAIPDRLP 538

Query: 485  HPVSL---QAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              + +    AI    R +EA ++ D      ++ ++ LEG  R    HA G +I   P+ 
Sbjct: 539  DGMKMNLTNAIKCTPRLQEAEVSEDARERNTIKYAKMLEGTVRGTGIHACGFIICRNPID 598

Query: 541  QLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
              VP+      D     +PVTQ++   IE  GLIK DFLGLKTL+ L+++   + Q    
Sbjct: 599  DWVPVSTASDPDFPEKKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVIRQTTGD 658

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VDL  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +LYRPGP
Sbjct: 659  VVDLDNIPIDDELTYQLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNALYRPGP 718

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+D LR
Sbjct: 719  MDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESDALR 778

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +AMGKK K  +D+ K +FI    +NG    +   I+    KFA Y FNKSHA  Y+ ++Y
Sbjct: 779  KAMGKKKKAIVDQMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYAFNKSHATCYSWVAY 838

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833
            QTA++K HYP E++AA MT     + +I K  ++ +   I  + P +N   + F V    
Sbjct: 839  QTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKAMKITTLGPDINESQIGFGVNSRG 898

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + LAAIKG+G + A  I+ E   +  +  + DF  RVD   +NR+  ESL ++G  D
Sbjct: 899  EIRFGLAAIKGMGASAAESIVREREKNGLYKDIYDFAERVDISNVNRKAFESLAYSGGFD 958

Query: 893  CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
             FG  R Q           LD I +Y Q  +  +  +  ++F              K   
Sbjct: 959  SFGLQREQYFAETGKGSLFLDTIVRYGQLYQAEKAQQQNSLFGGMDAVEVMHPVAPKTEK 1018

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------GNNIRLAA 999
              +  +   E+ ++G Y S HPLD Y  +L  M      +             + +    
Sbjct: 1019 WPAIEKLNKERELVGIYLSAHPLDEYSVVLDNMCNTHCSQIGRNADMEVLSKVDEVTFGG 1078

Query: 1000 MVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032
            +V +  ++ + + G   G+VT  +     E   F
Sbjct: 1079 IVTAVSERFSQKTGKPFGFVTIEDFKGSGELALF 1112


>gi|308177849|ref|YP_003917255.1| DNA polymerase III subunit alpha [Arthrobacter arilaitensis Re117]
 gi|307745312|emb|CBT76284.1| DNA polymerase III subunit alpha [Arthrobacter arilaitensis Re117]
          Length = 1169

 Score =  951 bits (2458), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1056 (34%), Positives = 548/1056 (51%), Gaps = 56/1056 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDM-- 79
            +L+GA  L  +  +       A+AITD   LF A +F ++A  AG++PIIG +  +    
Sbjct: 1    MLDGAARLGELFAEANRQDMKALAITDHGYLFGAFDFWRQATGAGVKPIIGVEAYVTPGT 60

Query: 80   ----------QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
                      + +        +       + LL    +G   L +  SR  L     +  
Sbjct: 61   ARDDKTRVKWRTDESQKGDDVSGGGLYNHMTLLSYNNKGMDNLFKGSSRASLDSVFGKYP 120

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R     L E   EG+I  TG  SG +           A+      + LF  +  +  +  
Sbjct: 121  RWDRELLNE-HHEGIIATTGCPSGEVQTKLRLGQYDAAKAAAAELQDLFGKENYFCEIMD 179

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
            H    +R     +++LA   ++PLVATN+  +  E D +AH+ L+A+   + + +     
Sbjct: 180  HGLEIERRITKDLLRLAKELDIPLVATNDLHYTHESDAKAHEALLAINSGSTLDEPTYDQ 239

Query: 247  ------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                       +YLK+  EM  +F +LPEA +NT+ IA R       +A  +P+F     
Sbjct: 240  GGSRFAFSGTGYYLKSAREMRELFKELPEACDNTLAIADRVEVSFDTNANYMPKFPCPPG 299

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +D    E + L  +   GL  R   G        +  R++ D+EL+VI +M F GYFL+V
Sbjct: 300  ED----ETSWLIKEVDKGLHYRYPNGI------PEASRKQADYELDVIIKMGFPGYFLVV 349

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFI W+K + I VGPGRGSGAGS+ AYA+ ITD+DPL   L+FERFLNP+R+SMPDFD+
Sbjct: 350  ADFINWSKDHGIRVGPGRGSGAGSMVAYAMRITDLDPLVHGLIFERFLNPERVSMPDFDV 409

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR EVIRYV  KYG ERV+ I+T+GS++ K AL+D  R L  P+S  + L K +P
Sbjct: 410  DFDDRRRSEVIRYVTEKYGDERVSMIVTYGSIKTKQALKDSSRVLGYPFSMGESLTKALP 469

Query: 481  ND-PAHPVSL--------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                A  + L        +  ++   FR     DP   R+ E ++ LEGL R    HAAG
Sbjct: 470  PAVMAKDIPLNDIDNPESKRYSEAGDFRNLVANDPEAARVFETAKGLEGLKRQWGVHAAG 529

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA- 590
            +++   P+  +VP+ R ++    +TQF+    E  GLIK DFLGL+ LT++  +L+ +  
Sbjct: 530  VIMSSDPIIDVVPIMRRIQDGQVITQFDYPTCEGLGLIKMDFLGLRNLTIISDALENIEY 589

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              G K+DL  +  +D E Y+LL    TLG+FQL+   MR  L+ M+PD  EDI A+++LY
Sbjct: 590  NTGTKIDLETLTIEDPEAYNLLARGDTLGVFQLDGGPMRSLLKMMRPDNFEDISAVIALY 649

Query: 651  RPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVMQIAQLLSG 704
            RPGP+  ++   Y  RK G +++  IHP +      +L  T G+I+YQEQVM IAQ L+G
Sbjct: 650  RPGPMGANSHTNYALRKTGLQEVTPIHPELAEPLAEILGGTYGLIVYQEQVMAIAQKLAG 709

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YSL +AD+LRRAMGKK K E+DKQ   F  G + NG S      ++++L  F+DY FNK+
Sbjct: 710  YSLGQADILRRAMGKKKKSELDKQFAGFKQGMNDNGYSDAAVQTLWDILLPFSDYAFNKA 769

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAY V+SY TA++K HYP E++AA +T   D+ +K+  +  + R   I ++PP VN  
Sbjct: 770  HSAAYGVVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLALYLNECRHIGITVLPPDVNES 829

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLE 883
             ++F      I + + AI+ VGT     ++EA A+   ++   DF  +V +   N+R +E
Sbjct: 830  ALNFTPVGKDIRFGMGAIRNVGTNAVSGMVEARAEKGNYNDFNDFLGKVPAVVCNKRTIE 889

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---AHEKGTFSDKITL 940
            SL+ AGA D   + R  L+   +        V++N      ++F     E  + S  + +
Sbjct: 890  SLIKAGAFDSMKHPRRALVAIHEEAVDSVIQVKRNEAANQFDLFSALGAEDSSESMHVAI 949

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT---IRGNNIRL 997
                  +   +   E+ +LG Y S HPL      L +         ++      G+ I +
Sbjct: 950  PDLPDWDKKEKLAYERDMLGLYVSDHPLQGLGSALDQYADMPVTHVLSDDGPQDGHIISI 1009

Query: 998  AAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
            A M+   Q++  +K G+        + +   E  FF
Sbjct: 1010 AGMISGLQRRIAKKSGNPYARCEIEDLSGSMEVMFF 1045


>gi|148244870|ref|YP_001219564.1| DNA polymerase III alpha subunit [Candidatus Vesicomyosocius okutanii
            HA]
 gi|146326697|dbj|BAF61840.1| DNA polymerase III alpha subunit [Candidatus Vesicomyosocius okutanii
            HA]
          Length = 1141

 Score =  951 bits (2458), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1042 (37%), Positives = 609/1042 (58%), Gaps = 45/1042 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL   S +S+    + ++  ++K+      +IA+TD +NLF+A++F QKA AA I
Sbjct: 3    NPGFVHLHCQSEFSVENSVVRISKFIEKVQEIGMDSIALTDESNLFAAVKFYQKATAANI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G +++I            K     + S +LL    +GY  L EL+S  Y   +  +
Sbjct: 63   KPIFGARINI------------KDKEGELYSGLLLCQDHQGYLNLSELISLSYTQGRSCE 110

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             V I    L +   +GLIM+       + +    N    A+++   ++ +F DR Y+ +Q
Sbjct: 111  RVSITQQELIDY-NQGLIMIATPIYSDVAKYLISNKIVKAKQKSEFWQAIFVDRYYLGVQ 169

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            R  R +D       ++LA    + +VATN+  FL+E D++AH+  + ++  +++    R 
Sbjct: 170  RTSRKFDEKHLHLCIKLALELGIAVVATNDVQFLNESDFDAHEARICISQGSLLDDTQRK 229

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ-VHAPILPRFIEKECDDIQ 304
               +   +LK+  +M  +FSDLPE LENT+E+A+RC+   +      LP F   E   I 
Sbjct: 230  RHFSNQQFLKSPKQMYKLFSDLPEILENTLELAKRCNVHFELFKKNYLPDFPIPEHLTI- 288

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               E     ++  GL  RL             Y+QRL FEL++I +M FSGYFLIVADFI
Sbjct: 289  ---EQFFSEESEGGLVQRLKNL----KVDVNIYQQRLKFELDIIIQMGFSGYFLIVADFI 341

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +W+K+N+IPVGPGRGSGAGS+ AY L IT++DP++  LLFERFLNP+R+SMPD DIDFC 
Sbjct: 342  KWSKENDIPVGPGRGSGAGSLVAYVLGITNVDPIKHELLFERFLNPERVSMPDLDIDFCT 401

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRRDEVI YV  +YGHE+V+QIIT+G++ AK  +RDVGR L  PY   D++ K+IPND  
Sbjct: 402  DRRDEVIGYVAKRYGHEKVSQIITYGTMAAKGVVRDVGRVLGHPYGFSDQISKMIPNDLR 461

Query: 485  HPVSLQAIAD-----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              +  +A+++         R    ++ SV  L+++S++LEGL R+  THA G+VI    +
Sbjct: 462  ATLE-KALSEPEKGGSKELRARYDSEESVTALIDLSKQLEGLVRNVGTHAGGVVIAPSKI 520

Query: 540  SQLVPMYRD-VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL---AQRGVK 595
            S   P+Y+    ++  V+QF+   +E  GL+KFDFLGL  LT++ K++  +         
Sbjct: 521  SDFCPVYKGYGENNSVVSQFDKDDVEAVGLVKFDFLGLSNLTVIHKAIKLISVKGLSDEP 580

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            ++L  +P DD   Y LL +  T G+FQLES GMR  L+ +Q D  EDI+A+++LYRPGP+
Sbjct: 581  INLDALPLDDKRVYKLLQSCDTTGVFQLESKGMRSYLKKLQADNFEDIVAMLALYRPGPL 640

Query: 656  DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            D  +V  Y N K+G  ++   HP+++ +LK T GV +YQEQVM+ AQ+++GYSL  AD+L
Sbjct: 641  DAGMVDDYINVKHG-AQVKYPHPMLEQILKPTNGVFLYQEQVMKSAQVMAGYSLGGADLL 699

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK   EM++Q+  F+ GA++ GI++  A  IF+L+ KF+ YGFNKSH+ AYA +S
Sbjct: 700  RRAMGKKKASEMNRQRSVFVKGAAERGINEKKANEIFDLIDKFSGYGFNKSHSVAYAYVS 759

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GD 832
            Y TAW+K+HYP  F+AA ++  MD+ +++     + RQ  + +  P+V     +F +   
Sbjct: 760  YHTAWLKSHYPAPFMAAVLSGVMDDTDRVSFTISEIRQMGLIVNGPNVCESNYEFSILDK 819

Query: 833  NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            N + Y L AIKGVG      ++ E S +  +  L +FCSR++ + LN+R +E+L+++GA 
Sbjct: 820  NTVLYGLGAIKGVGVALVDAVVFERSTNGTYKDLFEFCSRIEKRYLNKRAIEALIYSGAF 879

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D  G +R  L+++     + A+  + +  +    +F+H +     +         +   R
Sbjct: 880  DILGVNRESLIKTYPIAIRQAEQKQSDYFSGQNGLFSHNEY----ETRYLLAPSFSFKKR 935

Query: 952  FENEQRVLGFYFSGHPLDVYK-PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
             + E+ VLG+YF  HP + Y    L+ + +     ++   +  ++R+ A++   + +  +
Sbjct: 936  LQLEKSVLGYYFDNHPTNEYTVADLKNINVV-LPSNIVFRKNRDVRVLALISDLRYRSIK 994

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G RI  +T  + +    A  F
Sbjct: 995  NGERIALITIEDGSASLNAVVF 1016


>gi|282859320|ref|ZP_06268432.1| DNA polymerase III, alpha subunit [Prevotella bivia JCVIHMP010]
 gi|282587900|gb|EFB93093.1| DNA polymerase III, alpha subunit [Prevotella bivia JCVIHMP010]
          Length = 1241

 Score =  951 bits (2458), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1122 (30%), Positives = 548/1122 (48%), Gaps = 109/1122 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66
             ++HL VH+ YS+L+G   +NN++DK   D    +AITD   +F   EF+          
Sbjct: 3    DYIHLHVHTHYSILDGQSKINNLVDKAIKDGMKGMAITDHGVMFGIKEFADYCAKKNKER 62

Query: 67   -------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                    +PI GC++ +  +       +      +   +V+L     GY+ LI+LVS  
Sbjct: 63   KANGEEPFKPIFGCEMYVARRKQTDKVKE--MHDNSGYHLVVLAKNYNGYKNLIKLVSNA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++ D      R     L++   E LI+ T   +G I         + A +  L +K LFG
Sbjct: 121  WV-DGYYYRPRTDREQLEKYH-EDLIVCTACLAGEIPAKIRKGDIEGAREACLWYKNLFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +  Y+ LQRH   D             +     ++Q +  + + LV TN+S F  +E  E
Sbjct: 179  EDFYLELQRHEVTDPTLIANREAYPLQQQVNKVLMQFSKEYGIKLVCTNDSHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++ +  +    R R +   + K R EM  +F D+PEA+ NT+EI  +      
Sbjct: 239  AHDHLLCLSTNEDLDDPKRMRYSKQEWFKTREEMNQVFEDVPEAMANTIEILNKVEMYNI 298

Query: 287  VHAPILPRFIEKECDDIQKE---------------------------------------- 306
             H PI+P F   E    ++E                                        
Sbjct: 299  DHGPIMPFFPIPEDFGTEEEWRQKFSEEDLLKEFTSDENGENPLPEDEAKKVIERLGGYE 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L   +  G +             +++   R+ FEL+V+  M F GYFLI
Sbjct: 359  KIYRIKFEADYLAKLSYDGAKRLYGDQL------SEEVDSRIRFELHVMKTMGFPGYFLI 412

Query: 360  VADFIQWA-KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A  +  + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD 
Sbjct: 413  VQDFINAAENELGVIVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R +V+++V +KYGHE  A IIT+ ++  K +++DV R  ++P  + + LCK 
Sbjct: 473  DTDFDDDGRGKVLQWVMDKYGHENCAHIITYSTMATKNSIKDVARVEKLPLDRSNALCKA 532

Query: 479  IPNDPAHPVSLQ---AIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVI 534
            IP+     + +    AI+     +EA +++   +R  ++ ++ LEG  R    HA G +I
Sbjct: 533  IPDRLPDGLKMNLKNAISCTPMLQEAMVSENERERNTIKYAKMLEGTVRGTGIHACGFII 592

Query: 535  GDRPLSQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+   VP+      D     +PVTQ++   IE  GLIK DFLGLKTL+ L+++   +
Sbjct: 593  CRNPIDDWVPVSTATDPDYPDQKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVI 652

Query: 590  AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q    ++D+  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +
Sbjct: 653  KQTTGKEIDIEKIPIDDELTYQLYQKGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK+    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPDFIKRKHDPTLVQYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E+D LR+AMGKK K  +D  K +FI    +NG    +   I+    KFA Y FNKSHA  
Sbjct: 773  ESDALRKAMGKKKKNIVDAMKPKFIKQGQENGHDPKVLEKIWSDWEKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ ++YQTA++K HYP E++AA MT     + +I K  ++ +   I+ + P VN   + F
Sbjct: 833  YSWVAYQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKALKIETLGPDVNESQIGF 892

Query: 829  KVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V     I + L+AIKG+GT  A +I++    + P+  + DF  RVD   +NR+V+E+L 
Sbjct: 893  GVNKRGEIRFGLSAIKGIGTGAAENIVKERETNGPYKDIFDFVERVDLSSINRKVIENLA 952

Query: 887  FAGALDCFG--YSRMQLL-------QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            ++G  D  G    R +           LD + +Y Q  + ++     ++F         +
Sbjct: 953  YSGGFDSLGTITRREEYFGVNSKGEAFLDTLLRYGQLYQTSKAEAANSLFGGFDSIPVAR 1012

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIR 991
              +       +  +   E+ ++G Y S HPLD +  +L  +            + VA  +
Sbjct: 1013 PAVPPAEAWANIEKLNKERELVGIYLSAHPLDEFSVVLNHLCNTHCSQISRNADMVALAK 1072

Query: 992  GNNIRLAAMVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032
               +    +V + ++  + + G    +VT  +     E   F
Sbjct: 1073 TEELTFGGIVTNVREAFSQKTGKPYAFVTIEDFEGVGEIALF 1114


>gi|21234220|ref|NP_639831.1| DNA polymerase III subunit alpha [Streptomyces coelicolor A3(2)]
 gi|13620707|emb|CAC36747.1| putative DNA polymerase III, alpha chain (EC 2.7.7.7) [Streptomyces
            coelicolor A3(2)]
          Length = 1213

 Score =  950 bits (2457), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/1085 (30%), Positives = 550/1085 (50%), Gaps = 68/1085 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG- 66
            + SFVHL  H+ YS+L+GA  L  +  ++     PA+A++D  N+F A EF Q A   G 
Sbjct: 15   ADSFVHLHNHTEYSMLDGAQKLKPMFAEVDRQGMPAVAMSDHGNMFGAYEFQQVAKGFGS 74

Query: 67   IQPIIGCQLDIDMQDNLKMTN------------------QGKTPFPTVPSIVLLVSTAEG 108
            ++PIIG +  +                            +  +       + +  + A+G
Sbjct: 75   VKPIIGIEAYVAPSSRRNRRQEFWGPGGQRAVSDDGEGSKDVSGGGRFTHMTMWATGAQG 134

Query: 109  YQRLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
             + L  + +      Q      R+ +  + E   EG++  TG  SG +      N    A
Sbjct: 135  LRNLFYMSTEASYTGQFPAGKPRMDMELIAE-HAEGVVATTGCPSGAVQTRLRLNQYDEA 193

Query: 168  EKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
             +    ++ +F  +  ++ L  H    +R     +++LA    LPL+ATN++ ++ E   
Sbjct: 194  RQVASAYQDIFGKENYFLELMDHGLSIERDVREGLLRLARELSLPLLATNDAHYIHESQA 253

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
            +AHD L+ +      + + R R +   +YLK  +EM ++F++LPEA +NT+ IA R    
Sbjct: 254  DAHDNLLCIGVGKNKADEKRFRFSGSGYYLKTAAEMRALFAELPEACDNTLLIAERVGSY 313

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             +V   +       +  D  + +E+ LR + + GL +R             +  +R + E
Sbjct: 314  DEVFDNVDEMPQFPDVPD-GETQESWLRKEVLTGLAMRYGDPV------PTEVLERFETE 366

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            ++VI  M FS YFL+VAD  ++A+ N +PVGPGRGS  GS+ AYA  IT++ PL   LLF
Sbjct: 367  MSVIGPMGFSSYFLVVADICKYARDNGVPVGPGRGSATGSIVAYATRITELCPLEHGLLF 426

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R++ PD D+DF   +RD+++RYV  KYG E  A + TFG ++AK A++D  R 
Sbjct: 427  ERFLNPERINPPDVDLDFDDRQRDKMVRYVTEKYGDEYTAMVNTFGKIKAKNAIKDSSRI 486

Query: 465  LQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEIS 515
            L  P+S  +R+ K +P D     + L  I D            R     +P V  +++ +
Sbjct: 487  LGYPFSHGERITKALPPDIMGKSIPLDGIFDPEHPRHGEAGEIRTMYENEPDVKTVIDTA 546

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + +EGL R    HAA +++    L+  +P++      + +T F+    E  GL+K DFLG
Sbjct: 547  RGVEGLTRGTGVHAAAVILSKTRLTDRIPLHMRASDGVKITGFDYPSCENMGLVKMDFLG 606

Query: 576  LKTLTLLQKSLDFLAQ----RGVKVDLSL-------IPFDDHETYHLLTTKGTLGIFQLE 624
            L+ L ++  +++ + +    R   VD          IP DD +T+ LL    T G+FQL+
Sbjct: 607  LRNLGVIDHAIENIRENRGVRLATVDPMDGDSGTVVIPLDDKKTFELLGRGDTFGVFQLD 666

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LI 678
              GMR  L+ M+P   EDI A ++LYRPGP+  +    Y  R+NGK++   IHP    ++
Sbjct: 667  GGGMRALLKLMEPSRFEDIAAALALYRPGPMAANAHTNYALRQNGKQEPDPIHPELKEVL 726

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            DP+L  T  ++I+QEQ+M IA++L+GY+L  AD+LRRAMGKK  E +  + E+F  G   
Sbjct: 727  DPILGSTHHLLIFQEQIMAIARILAGYTLGGADMLRRAMGKKKPEVLAAEWEKFHDGMKA 786

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            N  S+     I++++  F+ Y FNKSH A Y ++SY TA++K +YP E++AA +T   D+
Sbjct: 787  NDYSEEAIKAIWDVMLPFSGYAFNKSHTAGYGLVSYWTAYLKANYPAEYMAALLTSVGDD 846

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
             +K   +  DAR+  + ++PP VN    +F    + + + L +++ VG      ++ A  
Sbjct: 847  KDKAGIYLADARKLGVTVLPPDVNESVAEFTAVGDDVRFGLRSVRNVGDNVIDTVITARK 906

Query: 859  -DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
                F S  DF  + D   LN+R +ESL+ AGA D  G++R  L    +        ++K
Sbjct: 907  TKGKFTSFADFLDKADLPALNKRAVESLIKAGAFDSLGHTRRGLCAVHETAIDAVVPLKK 966

Query: 918  NRTNKHENIFA--------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                  +++FA          +  F   + ++     +       E+ +LG Y S HPLD
Sbjct: 967  AAAYGQDDLFAGLGGGTGDDGESGFGLDVRIDD-GEWSRKQLLSTEREMLGMYVSAHPLD 1025

Query: 970  VYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
              + IL         + +A+ R    +RL+ ++   Q K T++G+    V  ++     E
Sbjct: 1026 GTEHILAAHRDTTIPDLLASGRTEGTVRLSGLITGVQNKVTKQGNAWAIVNLADRDGTIE 1085

Query: 1029 ANFFP 1033
              FFP
Sbjct: 1086 VLFFP 1090


>gi|257064824|ref|YP_003144496.1| DNA-directed DNA polymerase III PolC [Slackia heliotrinireducens DSM
            20476]
 gi|256792477|gb|ACV23147.1| DNA-directed DNA polymerase III PolC [Slackia heliotrinireducens DSM
            20476]
          Length = 1166

 Score =  950 bits (2457), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/1055 (33%), Positives = 546/1055 (51%), Gaps = 45/1055 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS------ALEFSQKAC 63
            +FVHL  H+ YS+L+GA  +  ++ + A    PA+AITD   +        A+E  +K  
Sbjct: 2    AFVHLHNHTEYSMLDGATKIKAMVRRAADLGMPAVAITDHGVMCGVPELCDAVEAVKKET 61

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
               ++PI GC++       +     G      +  ++LL     GY  L+ +VS  ++ D
Sbjct: 62   GVYVKPIYGCEVYFTEDREI-----GTRKKSPLYHLILLAKNNVGYHNLLHIVSESHM-D 115

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRL 182
                  R  +  L++  +EG+I  T   SG + R     +   A      F  +F     
Sbjct: 116  NFFYKPRTTIDVLEKY-SEGIIGTTACMSGIVQRRLDDRNYADALAWTKRFADIFAPGDF 174

Query: 183  YVNLQRHRGYDR------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            YV LQ      R         +Q+ Q+A    L  +ATN+  +L+ ED  A D+++ +  
Sbjct: 175  YVELQDQGLTSRGGLTQKEINTQLTQIAQELGLKTIATNDFHYLTREDAAAQDIMLCIGT 234

Query: 237  STVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
             ++   ++R R + D  Y+K   EM     D PEA +NT+E+A +C   L+    +LPRF
Sbjct: 235  GSLRDDENRMRFSNDEFYMKTEEEMREALKDFPEACDNTIEVAEKCFVELE-RDSVLPRF 293

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGA----IAKGYHAQDYRQRLDFELNVIARM 351
                       EE   R +   GLE R         I+ G H     +R ++E +VI + 
Sbjct: 294  PLPPG----YTEEQLFREECEKGLERRYGPDWREIKISDGMHDVSVLERYEYEASVIVQQ 349

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFLIV ++I+WAK++ I VGPGRGS AG++  YA+ ITD++PL   LLFERFL+P+
Sbjct: 350  GFPAYFLIVQEYIRWAKEHGIGVGPGRGSAAGAICTYAMGITDLEPLSNGLLFERFLSPE 409

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+ MPD D+DF  +RR EVI +V+  YG + +A +ITFG LQAK A+RD  R L  PY+ 
Sbjct: 410  RVEMPDIDVDFEDERRQEVIDHVREFYGADHIAGVITFGKLQAKNAVRDAARVLGHPYNT 469

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             DRLCK+I ++    +   AI ++    +    +P    +L+ +  +EG  R    HA  
Sbjct: 470  GDRLCKVIGDELGIKLK-DAIENNPDLAKIYKEEPESREILDSAMSIEGNIRGEGVHACA 528

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             +I   PL   VP+ RD +    +TQ++  +  + GL+K DFLGL+TL +L ++   +  
Sbjct: 529  TIICRDPLVDHVPVKRDTKGGGMITQYDGHYTPELGLLKMDFLGLRTLGVLSRACRNVKD 588

Query: 592  RG-VKVDLSLIPFDDHETYHLL---TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            R  + +    IP DD   Y L+   T     G+FQ+ES+        M+P    DI+A +
Sbjct: 589  RFGITIVPDEIPIDDEGAYKLMRLETPYSMDGLFQVESALYVSLFARMKPRTFSDIVASI 648

Query: 648  SLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +L RPGP++N  V  Y +R+ G++ +      + P+L+ET G I+YQEQ+MQI+  +SG+
Sbjct: 649  ALNRPGPLENGFVDLYVDRRMGRKPVSYYDDRLKPLLEETYGTIVYQEQIMQISMAMSGF 708

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            S  +AD LR+AMGKK  E M + K+ + +GA +NG S  IA  I+    +FA Y FNKSH
Sbjct: 709  SAGKADKLRKAMGKKRIEVMMQLKDDWCNGAVENGFSLEIAERIWHDAEEFAKYAFNKSH 768

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYAV+  +TA+MK HYP E++AA ++  M + +K+ K+     +  I ++PP +N+  
Sbjct: 769  SAAYAVLVCRTAYMKAHYPYEYMAAVLSSYMGSADKLIKYISSCTRNGIPVLPPDINSSN 828

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES 884
            ++F   +  I + LA ++GVG   A  I+       PF SL DF +RVD K  NR+ LE+
Sbjct: 829  LEFTPLEEGIRFGLAGVRGVGAAVAESIIAERDEGGPFTSLHDFVNRVDGKCYNRKTLEA 888

Query: 885  LVFAGALDCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIF----AHEKGTFSDKI 938
            LV AGA D  GY+R QL+  +D   + +     +++R N   ++F      E   F + I
Sbjct: 889  LVKAGAFDSTGYTRKQLMYFIDETSLLEDVAKRQRDRENGQVSMFDLFGDMEDSGFEEDI 948

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRL 997
                    +       E+ +L  Y S HPL  Y+  LR +      +         N   
Sbjct: 949  PAPDGVEWDKRTLLAFEKSILKIYVSDHPLSQYERSLRSISKFQLGDLADHKGDIKNGVF 1008

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++ + Q K T+KG ++      +     +   F
Sbjct: 1009 CGLISTVQIKMTKKGKKMATFVMEDTTGFVDCVCF 1043


>gi|182413909|ref|YP_001818975.1| DNA polymerase III, alpha subunit [Opitutus terrae PB90-1]
 gi|177841123|gb|ACB75375.1| DNA polymerase III, alpha subunit [Opitutus terrae PB90-1]
          Length = 1271

 Score =  950 bits (2457), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1134 (33%), Positives = 580/1134 (51%), Gaps = 114/1134 (10%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
               P+FVHL VHS YSLL+G+  ++ +L +       AIA+TD  NL+ A+EF + A  A
Sbjct: 3    SADPNFVHLHVHSDYSLLDGSCRIDRLLKRTNELGMKAIALTDHGNLYGAIEFYKAAKDA 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
             ++P+IGC+L +     L+   +      T+  + LL     GYQ L++LVS  +L    
Sbjct: 63   QVKPLIGCELYLVEHSRLEKHGRSDDDGKTIFHLGLLARNLTGYQNLLKLVSDAHLKG-F 121

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYV 184
                R  +  L +    GLI  +G  +  + +    +    A K    F ++F  +  ++
Sbjct: 122  YYKPRTDIETLAKYAG-GLIGFSGCLASLVPQHLLNDREDEARKACARFVEIFGRENYFI 180

Query: 185  NLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ H   ++ +    ++ LA   +L ++ +N+  +++  D   HD ++ +   + +  +
Sbjct: 181  ELQDHGIPEQRKIIPGLLDLAQEFKLQVICSNDVHYVNHGDAGPHDAMLCIQTGSKIDDE 240

Query: 244  DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA--PILPRFIEKEC 300
             R R +    YLK+R EM  +F ++P +L NT  +A  C   +         P++     
Sbjct: 241  KRMRFSGSQFYLKSREEMAQVFREVPASLTNTQLVADMCELAIPFPKGSERYPKYPLP-- 298

Query: 301  DDIQKEEENELRNKAVAGLEVRLA-------------------------QGAIAKGY--- 332
             +I+ +    L++  VAGL  R                           +      Y   
Sbjct: 299  PEIKTDRGGYLQDLCVAGLRRRYGVDYFAAASHPAAAERLDKLTNLPAGEKPQPPDYTGL 358

Query: 333  -HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
             H ++   R+ +EL++I    F  YFL+V DFI WAK + +PVGPGRGSGAG + AY L 
Sbjct: 359  THEEELVVRMGYELSIIRVTGFIDYFLVVWDFIAWAKSHGVPVGPGRGSGAGCLVAYLLG 418

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT++DPLRF LLFERFLNP+R+S PDFDIDFC  RR+EVI YV+ KYG + VA IIT+G+
Sbjct: 419  ITNLDPLRFKLLFERFLNPERVSPPDFDIDFCMRRREEVINYVREKYGKDCVANIITYGT 478

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            L AK  +RDV R   +P+++ DRL K+IP++    ++  AIA  +        +P   ++
Sbjct: 479  LGAKMVIRDVSRVHNLPFAEADRLAKMIPDELNITLT-DAIAKSAELSSEIARNPVAKKI 537

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            ++ +  LEG+ R+   HAAGI+I D+PL   VP+   ++      QF+M  + K GL+K 
Sbjct: 538  VDQALVLEGMVRNTGKHAAGIIITDQPLDDFVPL--TLQEGDVTVQFDMGAVTKLGLLKM 595

Query: 572  DFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            DFLGLKTLT++  ++D + +    K D+  IP DD +TY +L    T+G+FQLESSGM+ 
Sbjct: 596  DFLGLKTLTVIADAVDNVRRTADPKFDIETIPLDDPKTYAMLNAGKTVGVFQLESSGMQS 655

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
            A + +    I+DI A+ +LYRPGP+  I  Y   K     +   HPL++  L+ET G+I+
Sbjct: 656  ACKQVGVSNIDDINAICALYRPGPMQFIPDYARGKKDPSTVEYPHPLLEQSLQETYGIIV 715

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNI 749
            YQEQVM+ A++++GY+L  AD+LRRAMGKK  E M K++ +F+ GA + N I +  A  I
Sbjct: 716  YQEQVMECAKIIAGYTLGGADMLRRAMGKKDAEAMAKERVKFVEGAKRVNAIDEKKANEI 775

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            F+LL KFA YGFNKSH+AAYA++SYQTA++K +YPV+F+AA +T E+ N EK+  F  +A
Sbjct: 776  FDLLNKFASYGFNKSHSAAYALVSYQTAFLKANYPVQFMAAVLTAELGNAEKVSHFIAEA 835

Query: 810  RQFNIQIMPPSVNT---------------------------------------PCVDFKV 830
                I ++ P +N                                           +   
Sbjct: 836  EAMGITVLGPDINESREMFTPVLRGASSPRAQSPESRVQSQADSELSALNSQLSAAEADR 895

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                I + LA IKGVG   A+ I+E    +  F   +DF +R+D + +N+RVLE LV  G
Sbjct: 896  AGGAIRFGLAGIKGVGELAAQKIIEERDKNGAFCDFDDFAARMDGRAVNKRVLEHLVKTG 955

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH---ENIFAHE---------------- 930
            A D  G  R  L   +D          ++R        ++FA +                
Sbjct: 956  AFDYSGAPRKPLFDGIDAALATVAARARDRAAGQHSFLDMFAEDLAPKKNGKNGSNGHGA 1015

Query: 931  ------KGTFSDKITLEKF-----SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                    + SD  TL+           S+ R   E+ +LGFY SGHPL+V+  +   + 
Sbjct: 1016 ATPSSRPASGSDFSTLDSQLSTSSDDFTSTERLTFEKELLGFYVSGHPLNVFAGLTEAID 1075

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                 E +        RL  +V    ++ ++K        T +  A     N F
Sbjct: 1076 TYPITELLNQGDRTEFRLCGIVSGIAKRLSKKDNRPWASFTLATKAGALPLNMF 1129


>gi|297153520|gb|ADI03232.1| DNA polymerase III subunit alpha [Streptomyces bingchenggensis BCW-1]
          Length = 1233

 Score =  950 bits (2456), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/1082 (31%), Positives = 553/1082 (51%), Gaps = 68/1082 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-AGIQ 68
            SFVHL  H+ YS+L+GA  L  +  ++A    PAIA++D  N+F A EF+Q A    GI+
Sbjct: 39   SFVHLHNHTEYSMLDGAQKLKPMFGEVARQGMPAIAMSDHGNMFGAYEFAQVAKGFEGIK 98

Query: 69   PIIGCQLDIDMQDNLKMTN------------------QGKTPFPTVPSIVLLVSTAEGYQ 110
            PIIG +  +                            +  +       + +    ++G +
Sbjct: 99   PIIGIEAYVAPSSRFVRKQEFWGPGGRRATSADGEGSKDVSGGGRFTHLTMWARNSQGLR 158

Query: 111  RLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
             L  L ++     Q      R+    + +    G+I  TG  SG +      N    A+ 
Sbjct: 159  NLFWLSTQASYEGQFPAGKPRMDRELIADRPD-GIIATTGCPSGEVQTRLRLNQYAEAKA 217

Query: 170  RLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                ++++F  +  ++ L  H    +R     +++LA    +PL+ATN++ +++E+  +A
Sbjct: 218  AAAAYQEIFGRENYFLELMDHGLDIEREVREGLLRLATELNIPLLATNDAHYVTEDQADA 277

Query: 228  HDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            HD L+ +          R R     +YLK  +EM S+FS+LPEA +NT+ IA R     +
Sbjct: 278  HDSLLCIGVGKNKDDPGRFRFNGSGYYLKTAAEMRSLFSELPEACDNTLLIAERIESYDE 337

Query: 287  VHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            V   +  +PRF         + +E+ LR + + GL +R            Q    R + E
Sbjct: 338  VFDYVDEMPRFP---GVPEGETQESWLRKEVLEGLAMRYG------APVPQHILDRFETE 388

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            ++VI  M FS YFL+VAD  + A++N IP+GPGRGS  GS+ AYA  IT++ PL   LLF
Sbjct: 389  MSVIGPMGFSSYFLVVADICRHARENKIPLGPGRGSCTGSIVAYATRITELCPLEHGLLF 448

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R++ PD D+DF   +RD ++RYV  KYG E  A + TFG ++AK A++D  R 
Sbjct: 449  ERFLNPERINPPDVDLDFDDRQRDRMVRYVTEKYGEEYTAMVNTFGKIKAKNAIKDSSRI 508

Query: 465  LQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDS--------RFREARLADPSVDRLLEIS 515
            L  PYS  +R+ K +P D       L A+ D S          R+    +  V R+++ +
Sbjct: 509  LGYPYSHGERITKALPPDQNGKSAPLAAVFDSSHERYGEAGEIRQMYDNEQDVKRVIDTA 568

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + +EGL R    HAA +++    L+  +P++      + +T F+    E  GLIK DFLG
Sbjct: 569  RGVEGLTRGTGVHAAAVILSKTKLTDRIPLHMRASDGVKITGFDYPSCEAMGLIKMDFLG 628

Query: 576  LKTLTLLQKSLDFLAQ---------RGVKVDLSL--IPFDDHETYHLLTTKGTLGIFQLE 624
            L+ L ++ ++++ + +           +  D S   IP DD  TY LL    T G+FQL+
Sbjct: 629  LRNLGVIDQAIENIRENRGTSLATVDPLDGDPSTVVIPLDDATTYRLLAEGNTFGVFQLD 688

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI---- 678
              GMR  L+ M+P   EDI A+ +LYRPGP+  +    Y +RK G+++I  IHP +    
Sbjct: 689  GGGMRVLLKQMEPTRFEDIAAVNALYRPGPMAANAHTNYAHRKTGRQEITPIHPELRDAL 748

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +P+L  T  +++YQEQ+M IA+ L+GY+L  AD+LRRAMGKK  E +  + ++F SG   
Sbjct: 749  EPILGNTFHLLVYQEQIMAIARELAGYTLGGADLLRRAMGKKKPEVLAAEWDKFHSGMRG 808

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG  +     +++++  F+ Y FNKSH A Y ++SY TA++K +YP E++AA +T   D+
Sbjct: 809  NGYGEEAIKALWDVMLPFSGYAFNKSHTAGYGLVSYWTAYLKANYPAEYMAALLTSVGDD 868

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-S 857
             +K   +  DAR+  ++++ P VN    +F    + + + L +++ VG      +++A  
Sbjct: 869  KDKAAIYLADARKNGVRVLQPDVNESVAEFTAVGDDVRFGLRSVRNVGDNVIEAVIDARR 928

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
                F S  DF  +VD   LN+R  ESL+ AG  D  G+SR  L    ++       V+K
Sbjct: 929  RKGKFSSFADFLDKVDLPALNKRAAESLIKAGTFDSLGHSRKGLTAIHEDAIDAIIPVKK 988

Query: 918  NRTNKHENIFAHEKGTFSDKITL-----EKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              +   +++FA   G  S +           +          E+ +LG Y S HPLD  +
Sbjct: 989  AASFGQDDLFADLGGEGSSEPAFGLDFPVDDTEWPRRQLLATEREMLGLYVSAHPLDGAE 1048

Query: 973  PILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             IL +       E +A+ R   +++L+ ++   Q K T++G+    V  ++     E  F
Sbjct: 1049 HILSRARDCSIAELLASGRTTGDVQLSGLITGIQLKMTKQGNAWAIVNLADRDAGIEVLF 1108

Query: 1032 FP 1033
            FP
Sbjct: 1109 FP 1110


>gi|327314343|ref|YP_004329780.1| DNA polymerase III subunit alpha [Prevotella denticola F0289]
 gi|326944718|gb|AEA20603.1| DNA polymerase III, alpha subunit [Prevotella denticola F0289]
          Length = 1239

 Score =  950 bits (2455), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/1114 (31%), Positives = 544/1114 (48%), Gaps = 95/1114 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA----- 64
             +VHL VH+ YS+L+G   +  ++DK  AD    +A+TD   +F   EFS          
Sbjct: 3    DYVHLHVHTDYSVLDGQSKVTRLVDKAVADGMKGMAVTDHGVMFGIKEFSDYCAKVNKGR 62

Query: 65   -----AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                 A  +P+ GC++ +  +              +   +++L     GY+ LI+LVS+ 
Sbjct: 63   KEKGEAPFKPVFGCEMYVARRTMHDKDKS--MHDNSGYHLIVLAKNYHGYKNLIKLVSKA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++ D      R     L++   E LI+ +   +G I      +  + A +    + ++FG
Sbjct: 121  WV-DGYYYKPRTDREQLEKYH-EDLIVCSACIAGEIPSKIIHDDIEGAREACEWYHRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     +++ A  + + ++ TN+  F  +E  E
Sbjct: 179  DDFYLELQRHEVKDPTLVANREAYPLQQKANKVLLRFAEEYGIKVICTNDCHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++ +  +    R R +   + K R EM  +FSD+PEAL NT+EI  +      
Sbjct: 239  AHDHLLCLSTNEDLDDPKRMRYSKQEWFKTRQEMNEVFSDIPEALTNTLEILDKVEIYSI 298

Query: 287  VHAPILPRFIEKECDDIQKE-----EENELRNK------------AVAGLEVRLAQGAIA 329
             H PI+P F   E    ++E      E++L  +            A  G +V    G   
Sbjct: 299  DHGPIMPFFPIPEDFGTEEEWRKKFSEDDLYREFTTDENGEHPLPAEEGQKVIRRLGGYE 358

Query: 330  KGYH------------------------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            K Y                         + + +  + FEL+V+  M F GYFLIV DFI 
Sbjct: 359  KIYRIKFEADYLAKLAYDGAGKLYGDPLSDEVKSHIRFELHVMKTMGFPGYFLIVQDFIN 418

Query: 366  WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF  
Sbjct: 419  AAREKLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDTDFDD 478

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D R +V+++V +KYGHE  A IIT+ ++  K ++RDV R  ++     + LCK IP+   
Sbjct: 479  DGRGKVLQWVMDKYGHENCAHIITYSTMATKNSIRDVARVEKLSLDVSNGLCKAIPDRLP 538

Query: 485  HPVSL---QAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              + +    AI    R +EA ++ D      ++ ++ LEG  R    HA G +I   P+ 
Sbjct: 539  DGMKMNLTNAIKCTPRLQEAEVSEDARERNTIKYAKMLEGTVRGTGIHACGFIICRNPID 598

Query: 541  QLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
              VP+      D     +PVTQ++   IE  GLIK DFLGLKTL+ L+++   + Q    
Sbjct: 599  DWVPVSTASDPDFPEKKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVIRQTTGD 658

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VDL  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +LYRPGP
Sbjct: 659  VVDLDNIPIDDELTYQLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNALYRPGP 718

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+D LR
Sbjct: 719  MDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESDALR 778

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +AMGKK K  +D+ K +FI    +NG    +   I+    KFA Y FNKSHA  Y+ ++Y
Sbjct: 779  KAMGKKKKAIVDQMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYAFNKSHATCYSWVAY 838

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833
            QTA++K HYP E++AA MT     + +I K  ++ +   I  + P +N   + F V    
Sbjct: 839  QTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKAMKITTLGPDINESQIGFGVNSRG 898

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + LAAIKG+G + A  I+ E   +  +  + DF  RVD   +NR+  ESL ++G  D
Sbjct: 899  EIRFGLAAIKGMGASAAESIVREREKNGLYKDIYDFAERVDISNVNRKAFESLAYSGGFD 958

Query: 893  CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
             FG  R Q           LD I +Y Q  +  +  +  ++F              K   
Sbjct: 959  SFGLQREQYFAETGKGSLFLDTIVRYGQLYQAEKAQQQNSLFGGMDAVEVMHPVAPKTEK 1018

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------GNNIRLAA 999
              +  +   E+ ++G Y S HPLD Y  +L  M      +             + +    
Sbjct: 1019 WPAIEKLNKERELVGIYLSAHPLDEYSVVLDNMCNTHCSQIGRNADMEVLSKVDEVTFGG 1078

Query: 1000 MVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032
            +V +  ++ + + G   G+VT  +     E   F
Sbjct: 1079 IVTAVSERFSQKTGKPFGFVTIEDFKGAGELALF 1112


>gi|317488485|ref|ZP_07947036.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA]
 gi|325831887|ref|ZP_08164984.1| putative DNA polymerase III subunit alpha [Eggerthella sp. HGA1]
 gi|316912417|gb|EFV33975.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA]
 gi|325486208|gb|EGC88660.1| putative DNA polymerase III subunit alpha [Eggerthella sp. HGA1]
          Length = 1153

 Score =  950 bits (2455), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/1048 (31%), Positives = 542/1048 (51%), Gaps = 44/1048 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA----- 64
            +FVHL  H+ YSLL+G   + +++ + A    PA+AI+D   +    +  +         
Sbjct: 2    AFVHLHNHTEYSLLDGHTHIYDMVKRAADLDMPAVAISDHGVMSGVPQLCEMCDKVEAET 61

Query: 65   -AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
               ++PI GC++     + L+   +     P +  ++LL  T EGY  L++LVS  ++ D
Sbjct: 62   GKRVKPIYGCEVYFTTDEELRKDTK-----PKLYHLLLLAKTNEGYHNLVKLVSESHV-D 115

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRL 182
                  R   S LQ+ G +G+I  +   +G I +         A +    F   F     
Sbjct: 116  NFYYKPRTTFSMLQKYG-KGIIGSSACIAGIIPKLLDNRQVDEAVEWAKKFASCFEPGDF 174

Query: 183  YVNLQRHRGYDRY------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            Y+ LQ                  +  +A    L  +ATN+  +L+ ED  A D ++ +  
Sbjct: 175  YIELQNQGIRTDAGFTQTELNHMLTDVAKAAGLKTIATNDFHYLTREDARAQDYMLCIGT 234

Query: 237  STVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                +  +R R   D  Y+K   EM     D PEA + TVE+A + + +L+    ILPRF
Sbjct: 235  GAAFNDANRMRFENDQFYMKTEEEMREALKDFPEACDTTVEVAEKVNVVLE-RDSILPRF 293

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
               E +     EE+  R +   GL               Q+ ++R D+E+ +I +  F  
Sbjct: 294  PLPEGE----TEESYFRKRVQEGLVKHYGNPV------PQEAQERADYEMGIIIQQGFPA 343

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV ++I+WA+   I VGPGRGS AG++ AYA+ IT +DPL   LLFERFL+P+R+ M
Sbjct: 344  YFLIVQEYIEWARSQGIGVGPGRGSAAGAIVAYAMDITALDPLSNGLLFERFLSPERVEM 403

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF Q RR+EVI ++++ YG + V+Q+ITFG+LQAK A+RD  R L  PYS  D++
Sbjct: 404  PDIDVDFEQGRREEVINHIKDVYGEDHVSQVITFGTLQAKNAVRDAARVLDYPYSTGDKI 463

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             K+I ++    +  +A+A +   ++A   +  V  +++ +  +EG  R    HA   +I 
Sbjct: 464  TKMIGDELGITID-KALATNPDLKKAYETEEDVKAVIDAALSIEGHVRGEGVHACATIIC 522

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
              P++  VPM RD +    +TQ++  +  + GL+K DFLGL+TL +L  +   + QR   
Sbjct: 523  RDPMADHVPMKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLDVLTIACRNIEQRFGT 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            KV    IP DD   + L+ +    G+FQ+E +        + P    DI+A ++L RPGP
Sbjct: 583  KVIPEDIPIDDEGAFKLMQSGNMDGLFQVEGALYVSLFARLPPTRFSDIVASIALNRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +++ +V  Y    +GK  I      + P+L+ET G ++YQEQ+MQI+  +SG+S  +AD 
Sbjct: 643  LESGMVEDYIKVASGKTSIHYYDERLRPILEETYGTMVYQEQIMQISMAMSGFSAGKADK 702

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LR+AMGKK  + M   +E + +GA +NG    IA  I+E   KFA Y FNKSH+AAYA++
Sbjct: 703  LRKAMGKKKLDVMRALQEDWNTGAVENGYPLEIAKQIWEDAEKFAKYAFNKSHSAAYAIL 762

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
              +TA++K HYP +F+AA ++  M N +++ ++        I ++PP +N+   +F   D
Sbjct: 763  VMRTAYLKAHYPNDFMAAVLSSYMGNTDRLIRYIASCNHSGIPVLPPDINSSNAEFTPTD 822

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              + + L  ++GVG   A  I+E   A+ PF SL DF +R+D+K  NR+ LE+L+  GA 
Sbjct: 823  EGVRFGLVGVRGVGANVAEAIIEEREANGPFTSLHDFVNRLDAKCYNRKTLEALIKGGAF 882

Query: 892  DCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSV 945
            D  GY+R QL+  +D   + + A   +K+R +   ++F          F +++       
Sbjct: 883  DSTGYTRKQLMYFVDETPLLESASKRQKDRESGQVSMFDLFGDDPDSGFEEEVPEPDGVE 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSK 1004
                     E+ ++  Y S HPL  Y+  + +M      +     +   +     M+ + 
Sbjct: 943  WPKRQLLTFEKEIMKIYVSDHPLRPYEGTIARMTKFSLGDLAERTKEIKSAVFVGMISNV 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              K T++G+++   T  +     E   F
Sbjct: 1003 VTKLTKRGTKMATFTLEDTTGHVECICF 1030


>gi|313847630|emb|CBY16618.1| putative DNA polymerase III alpha subunit [Chlamydophila psittaci
            RD1]
          Length = 1248

 Score =  949 bits (2454), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1077 (33%), Positives = 568/1077 (52%), Gaps = 60/1077 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+ + + K    Q P++A+TD  NL+ A+EF ++     I+P
Sbjct: 8    TWIPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECQQNDIKP 67

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +          + K+       ++LL     GY+ L  L S  +         
Sbjct: 68   IIGCEIYVAPSSRFDKKKEKKSRVAN--HLILLCKNELGYRNLCLLSSLAFTEG-FYYFP 124

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +   EGLI L+   SG + +A    S +  EK L  ++ LFG+  Y  +Q H
Sbjct: 125  RIDRDLLSQ-HAEGLICLSACLSGSVAQAALE-SEEALEKDLRWYQNLFGEDFYSEIQLH 182

Query: 190  RGYDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +  +                            V+  +    +  VATN+  ++  +D+ A
Sbjct: 183  KMSEEKIASLGEEWLKHEYYQFIDSQTKVNQAVLDASKRLGIRSVATNDIHYIHADDWLA 242

Query: 228  HDVLMAVAHSTV----------VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+ V                + K +   + ++Y K+  EM  +F+D PE + NT+E+
Sbjct: 243  HEILLNVQLGETIRIAKQNTYIPNPKRKTFRSREYYFKSPEEMAMLFADHPETITNTLEV 302

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQGAI- 328
            A +C+  L + +   P ++     D     E E        LR     GL  +     + 
Sbjct: 303  ADKCNLELNLSSKHYPIYVPDFLKDKPNYTEEERYAASSAFLRELCEKGLSTKYTPEKLA 362

Query: 329  ------AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                        +  ++RL+ E+++I       Y LIV D I WAK N IPVGPGRGSGA
Sbjct: 363  HISKKFPDRDPLELVKERLEMEMSIIIPKGMCDYLLIVWDIIYWAKDNGIPVGPGRGSGA 422

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + 
Sbjct: 423  GSVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDN 482

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            VAQIITFG+++AK A++DVGR L +  S+V+ + K IP    +    +A+  D    E  
Sbjct: 483  VAQIITFGTMKAKMAVKDVGRTLDVALSKVNHIAKHIPE--LNTTLAKALETDPHLNELY 540

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
              D    ++++++ +LEG  R+   HAAG++I    L+  +P+     S +  TQF+MK 
Sbjct: 541  TNDAEAAQVIDMAMRLEGSIRNTGVHAAGVIICGDRLTNHIPICISKDSTMITTQFSMKP 600

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            +E  G++K DFLGLKTLT +  ++  +  + G  ++++ +P DD  T+ LL    T+GIF
Sbjct: 601  VESVGMLKVDFLGLKTLTSIHIAIRAIEKKTGKLLEMASLPLDDKTTFALLHQGKTMGIF 660

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            Q+ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++ +
Sbjct: 661  QMESKGMQELAKNLRPDSFEEIIAIGALYRPGPMDMIPSFINRKHGKEIIEYDHPLMESI 720

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  ++M K++ RF   A KNGI
Sbjct: 721  LKETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDIDQMLKERTRFCERACKNGI 780

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
               +A  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK
Sbjct: 781  DADLATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPREWLAALLTSDSDDIEK 840

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK 860
            + K   +A   +I I+PP +N    DF   D  I +++ AI+G+G      I+E      
Sbjct: 841  VGKLIHEAHSMDICILPPDINESGTDFVATDKGIRFAMGAIRGIGKGLVESIIEEREKHG 900

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            P+ S++DF  R D KK+ ++  E+L+ AG  D F   R     +L+++       +K   
Sbjct: 901  PYQSIQDFIQRSDLKKVTKKHTENLIDAGCFDVFEPDRDVAQATLESLYDSISKEKKEAA 960

Query: 921  NKHENIFAHEKGTFSDKITLEKFSV---ENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                  F+         ITL   +     +     + E+ +LG Y + HP+D  K IL +
Sbjct: 961  TGVMTFFSLNTMNQKHPITLTPAADVVRRSKKEILKKEKELLGIYLTEHPMDAVKDILPR 1020

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033
            + +    E      G  IR   ++     + + KG R    +  S+    YE   +P
Sbjct: 1021 LSVVSPGEFDNLPHGAVIRTIFIIDKVTTRISSKGQRKFALLRVSDGVDSYELPIWP 1077


>gi|329942392|ref|ZP_08291202.1| DNA polymerase III, alpha subunit [Chlamydophila psittaci Cal10]
 gi|325506690|gb|ADZ18328.1| DNA polymerase III subunit alpha [Chlamydophila psittaci 6BC]
 gi|328815302|gb|EGF85290.1| DNA polymerase III, alpha subunit [Chlamydophila psittaci Cal10]
 gi|328914265|gb|AEB55098.1| DNA polymerase III, alpha subunit, form 1 [Chlamydophila psittaci
            6BC]
          Length = 1242

 Score =  949 bits (2454), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1077 (33%), Positives = 568/1077 (52%), Gaps = 60/1077 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+ + + K    Q P++A+TD  NL+ A+EF ++     I+P
Sbjct: 2    TWIPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECQQNDIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +          + K+       ++LL     GY+ L  L S  +         
Sbjct: 62   IIGCEIYVAPSSRFDKKKEKKSRVAN--HLILLCKNELGYRNLCLLSSLAFTEG-FYYFP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +   EGLI L+   SG + +A    S +  EK L  ++ LFG+  Y  +Q H
Sbjct: 119  RIDRDLLSQ-HAEGLICLSACLSGSVAQAALE-SEEALEKDLRWYQNLFGEDFYSEIQLH 176

Query: 190  RGYDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +  +                            V+  +    +  VATN+  ++  +D+ A
Sbjct: 177  KMSEEKIASLGEEWLKHEYYQFIDSQTKVNQAVLDASKRLGIRSVATNDIHYIHADDWLA 236

Query: 228  HDVLMAVAHSTV----------VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+ V                + K +   + ++Y K+  EM  +F+D PE + NT+E+
Sbjct: 237  HEILLNVQLGETIRIAKQNTYIPNPKRKTFRSREYYFKSPEEMAMLFADHPETITNTLEV 296

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQGAI- 328
            A +C+  L + +   P ++     D     E E        LR     GL  +     + 
Sbjct: 297  ADKCNLELNLSSKHYPIYVPDFLKDKPNYTEEERYAASSAFLRELCEKGLSTKYTPEKLA 356

Query: 329  ------AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                        +  ++RL+ E+++I       Y LIV D I WAK N IPVGPGRGSGA
Sbjct: 357  HISKKFPDRDPLELVKERLEMEMSIIIPKGMCDYLLIVWDIIYWAKDNGIPVGPGRGSGA 416

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + 
Sbjct: 417  GSVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDN 476

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            VAQIITFG+++AK A++DVGR L +  S+V+ + K IP    +    +A+  D    E  
Sbjct: 477  VAQIITFGTMKAKMAVKDVGRTLDVALSKVNHIAKHIPE--LNTTLAKALETDPHLNELY 534

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
              D    ++++++ +LEG  R+   HAAG++I    L+  +P+     S +  TQF+MK 
Sbjct: 535  TNDAEAAQVIDMAMRLEGSIRNTGVHAAGVIICGDRLTNHIPICISKDSTMITTQFSMKP 594

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            +E  G++K DFLGLKTLT +  ++  +  + G  ++++ +P DD  T+ LL    T+GIF
Sbjct: 595  VESVGMLKVDFLGLKTLTSIHIAIRAIEKKTGKLLEMASLPLDDKTTFALLHQGKTMGIF 654

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            Q+ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++ +
Sbjct: 655  QMESKGMQELAKNLRPDSFEEIIAIGALYRPGPMDMIPSFINRKHGKEIIEYDHPLMESI 714

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  ++M K++ RF   A KNGI
Sbjct: 715  LKETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDIDQMLKERTRFCERACKNGI 774

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
               +A  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK
Sbjct: 775  DADLATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPREWLAALLTSDSDDIEK 834

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK 860
            + K   +A   +I I+PP +N    DF   D  I +++ AI+G+G      I+E      
Sbjct: 835  VGKLIHEAHSMDICILPPDINESGTDFVATDKGIRFAMGAIRGIGKGLVESIIEEREKHG 894

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            P+ S++DF  R D KK+ ++  E+L+ AG  D F   R     +L+++       +K   
Sbjct: 895  PYQSIQDFIQRSDLKKVTKKHTENLIDAGCFDVFEPDRDVAQATLESLYDSISKEKKEAA 954

Query: 921  NKHENIFAHEKGTFSDKITLEKFSV---ENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                  F+         ITL   +     +     + E+ +LG Y + HP+D  K IL +
Sbjct: 955  TGVMTFFSLNTMNQKHPITLTPAADVVRRSKKEILKKEKELLGIYLTEHPMDAVKDILPR 1014

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033
            + +    E      G  IR   ++     + + KG R    +  S+    YE   +P
Sbjct: 1015 LSVVSPGEFDNLPHGAVIRTIFIIDKVTTRISSKGQRKFALLRVSDGVDSYELPIWP 1071


>gi|326440734|ref|ZP_08215468.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC
            27064]
          Length = 1146

 Score =  949 bits (2454), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/1036 (32%), Positives = 529/1036 (51%), Gaps = 52/1036 (5%)

Query: 39   DQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKM----------TNQ 88
                 IA+TD  NL  A +F  +A  AGI PIIG +  +  +                  
Sbjct: 1    MGMSHIAMTDHGNLHGAYDFFHQAKGAGITPIIGIEAYVAPESRRNKRKIQWGQPHQKRD 60

Query: 89   GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLT 148
              +         +  +   G   L  L S  Y     ++  R+    + +  +EGLI  T
Sbjct: 61   DVSGSGGYTHKTIWAANRTGLHNLFRLSSDAYAEGWLQKWPRMDKETIAQW-SEGLIAST 119

Query: 149  GGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRHRGY-DRYRESQVVQLAYT 206
            G  SG +           A K    ++ +F   R ++ L  H    +R     ++++   
Sbjct: 120  GCPSGELQTRLRLGQFDEALKAASEYQDIFGKGRYFLELMDHGIEIERRVRDGLLEIGKK 179

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFS 265
             ++P + TN+S +  + +  AHD L+ +     +S  DR R     +YLK+  +M +I S
Sbjct: 180  LDIPPLVTNDSHYTFDHEAGAHDALLCIQTGKNLSDPDRFRFDGTGYYLKSTDQMYAIDS 239

Query: 266  --DLPEALENTVEIARRCSFILQVH-APILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
                 E   NT+ +A +           ++P+F           E    + +   G+  R
Sbjct: 240  SDAWQEGCRNTLLVAEQIDTSGMFEAKNLMPKFEIPAGF----TEVTWFQEEVRTGMARR 295

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
               G        +D +++ ++E++VI  M F GYFL+VADFI WAKKN I VGPGRGS A
Sbjct: 296  YPGGV------PEDRQRQAEYEMDVIVSMGFPGYFLVVADFIMWAKKNGIAVGPGRGSAA 349

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GS+ AYA+ ITD+DP+   L+FERFLNP+R+SMPD DIDF + RR EVIRYV  KYG ++
Sbjct: 350  GSIVAYAMGITDLDPIEHGLIFERFLNPERISMPDVDIDFDERRRVEVIRYVTEKYGADK 409

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS----- 496
            VA I T+G+++AK A++D  R L  PY+  DRL K +P D     + L  I D +     
Sbjct: 410  VAMIGTYGTIKAKNAIKDSARVLGYPYAMGDRLTKAMPADVLGKGIPLSGILDPAHPRYS 469

Query: 497  ---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                 R     +P V ++++ ++ +EGL R    HAAG+++   P++   P++      +
Sbjct: 470  EAGEIRGMYENEPDVKKVIDTARGVEGLVRQMGVHAAGVIMSSEPITDHAPVWVRHSDGV 529

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLL 612
             +TQ++    E  GL+K DFLGL+ LT++  ++  +   +G+++++  IP DD  TY LL
Sbjct: 530  TITQWDYPSCESLGLLKMDFLGLRNLTIMDDAVKMVKANKGIELEMLSIPLDDPTTYELL 589

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEK 670
                TLG+FQ +   MR  L  M+PD  EDI A+ +LYRPGP+       Y  RKN +++
Sbjct: 590  CRGDTLGVFQFDGGPMRSLLRLMKPDNFEDISAVSALYRPGPMGMNSHTNYALRKNKQQE 649

Query: 671  IVSIHPLIDPMLKE----TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            I  IHP ++  LKE    T G+I+YQEQV + AQ+++GYSL EAD+LRR MGKK  EE+ 
Sbjct: 650  ITPIHPELEEPLKEVLDVTYGLIVYQEQVQKAAQIIAGYSLGEADILRRVMGKKKPEELA 709

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K    F +GA KNG S      ++++L  FA Y FNK+H++AY +++Y TA++K ++P E
Sbjct: 710  KNFTIFQAGARKNGYSDEAVQALWDVLVPFAGYAFNKAHSSAYGLVTYWTAYLKANHPAE 769

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGV 845
            ++AA +T   D+ +K   +  + R+  I+++PP+VN    +F   GD+ I + L+A++ V
Sbjct: 770  YMAALLTSVKDDKDKSAVYLNECRRMGIKVLPPNVNESQSNFAAQGDDVILFGLSAVRNV 829

Query: 846  GTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            GT     I+        + S  DF  +V+    N+R +ESL+ AGA D  G++R  L+  
Sbjct: 830  GTNVVESIIRCRKSKGKYSSFPDFLDKVEVVVCNKRTVESLIKAGAFDELGHTRKGLVAH 889

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFS--VENSSVRFENEQRVL 959
             + +      V++       ++F       +D+       +FS      S     E+ +L
Sbjct: 890  HEPMIDNVVAVKRKEAEGQFDLFGGMGDDSADEPGFGLDVEFSDVEWEKSYLLAQEREML 949

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            G Y S HPL   + +L         +        G  + +  ++   Q+K T++G+    
Sbjct: 950  GLYVSDHPLFGIEHVLSDKSDASISQLTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAI 1009

Query: 1018 VTFSEPAKEYEANFFP 1033
             T  + A   E  FFP
Sbjct: 1010 ATVEDLAGSIECMFFP 1025


>gi|254495210|ref|ZP_05108134.1| DNA polymerase III, alpha subunit [Polaribacter sp. MED152]
 gi|85819562|gb|EAQ40719.1| DNA polymerase III, alpha subunit [Polaribacter sp. MED152]
          Length = 1445

 Score =  949 bits (2453), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1075 (32%), Positives = 559/1075 (52%), Gaps = 64/1075 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------SQ 60
            K   F HL  H+ +S+L+  + + NI+   A D  PA+A+TDT N+ ++  F        
Sbjct: 256  KDVQFAHLHNHTQFSVLQSTMQIGNIVKAAAKDNMPAVAMTDTANMMASFHFVSAVLNHN 315

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            K     ++PIIGC      + N+   ++ K+       +VLL     GY  L ++ S  +
Sbjct: 316  KTAETPMKPIIGC------EFNICEDHKNKSQKDNGYQVVLLAKNKNGYHNLAKMSSIAF 369

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            + D      RI    +++   + +I+LTG   G +         + AE+ LL +K+ F D
Sbjct: 370  V-DGFYYVPRIDKEIIKKY-KDDIIVLTGNLYGEVPSKILNLGEKQAEEALLWWKEQFQD 427

Query: 181  RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ L RH   D       +++ +  H++ +VATNN+ +L ++D  AHD+L+ V     
Sbjct: 428  DFYIELMRHNQQDENIVNETLLKFSKKHDIKIVATNNTFYLEKKDANAHDILLCVKDGEK 487

Query: 240  VSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +                ++Y K+  EM ++F+DLPEA+ N  EI  +          +L
Sbjct: 488  QATPKGKGRGYRYGLPNEEYYFKSSDEMKTLFADLPEAIINIQEIVDKIEIFTLARDVLL 547

Query: 293  PRFIEKEC--------DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            P F   +         D  ++ E N L++    G ++R        G    + ++RLDFE
Sbjct: 548  PAFDIPDEFKDARDNEDGGKRGENNFLKHLTFEGAKIRY-------GEITPEIKERLDFE 600

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L VI +  + GYFLIV DFI+ A+K ++ VGPGRGS AGSV AY L IT+IDP+++ LLF
Sbjct: 601  LEVIEKTGYPGYFLIVEDFIREARKMDVAVGPGRGSAAGSVVAYCLWITNIDPIKYDLLF 660

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD DIDF  + R  V+ YV +KYG  +VAQIIT+G++ AK+++RD  R 
Sbjct: 661  ERFLNPERVSMPDIDIDFDDEGRGRVMDYVIDKYGANQVAQIITYGTMAAKSSIRDTARV 720

Query: 465  LQMPYSQVDRLCKLIP---------NDPAHPVSLQAIADDS-----RFREARLADPSVDR 510
            L +P  + DR+ KLIP         +DP     +  +  +        R        V  
Sbjct: 721  LDLPLFEADRIAKLIPGIKLKNIFGDDPKSKGKVDGLRAEEKQLVEELRTMSSGSDLVSE 780

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
             +  +  LEG  R+   HA G++I    ++  VP+     SD+ VTQF+   +E AGL+K
Sbjct: 781  TINKATILEGSVRNTGIHACGVIITPGDITNYVPVALAKDSDMYVTQFDNSVVESAGLLK 840

Query: 571  FDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             DFLGLKTLTL++ ++  +  + GV++D    P DD +TY L     T+GIFQ ES GM+
Sbjct: 841  MDFLGLKTLTLIKDTVKIVKAKHGVELDPENFPLDDEKTYELFQRGETVGIFQYESPGMQ 900

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
            + +  ++P    D+IA+ +LYRPGP++ I  + NRK+G E I    P ++  L ET G+ 
Sbjct: 901  KHMRSLKPTVFADLIAMNALYRPGPMEYIPSFINRKHGTEDIEYDLPAMEEYLAETYGIT 960

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVM ++Q L+ ++  EADVLR+AMGKK    +DK K +FI  A KNG  +     I
Sbjct: 961  VYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQAGKNGHDEEKLEKI 1020

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++    FA Y FNKSH+  YA I+YQTA++K HYP E++A+ ++  M +++ +  F ++ 
Sbjct: 1021 WKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMASVLSNNMKDIKAVSFFMEEC 1080

Query: 810  RQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLED 867
            ++  ++++ P +N   + F V     + + +AA+KGVG    R I+     +  + S+ D
Sbjct: 1081 KRMGLEVLGPDINESYLKFSVNQEGAVRFGMAAVKGVGAAAVRAIIAERKENGNYSSIFD 1140

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQWVEKNR 919
               RVD +  N++  +SL+ AGA D F    R Q   +       L+   K+    ++N 
Sbjct: 1141 LAKRVDLRAANKKSFDSLIKAGAFDSFSDTHRAQYFATDEKGITFLERAMKFGSKYQENE 1200

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR--K 977
             +   ++F         +  + +     +      E+ V+G Y S HPLD +K  +    
Sbjct: 1201 NSAQVSMFGETSTVQFPEPDIPECETWGTMELLSQEKEVIGIYISAHPLDDFKNEMIFCN 1260

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +K ++  +    G N+  A ++   Q + ++ G         +     E   F
Sbjct: 1261 ASLKYFKGDLNKYVGMNLSFAGIITEVQHRVSKAGKGWASFFIEDYGDSNEFRVF 1315


>gi|210635289|ref|ZP_03298485.1| hypothetical protein COLSTE_02416 [Collinsella stercoris DSM 13279]
 gi|210158450|gb|EEA89421.1| hypothetical protein COLSTE_02416 [Collinsella stercoris DSM 13279]
          Length = 1267

 Score =  949 bits (2453), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1135 (30%), Positives = 543/1135 (47%), Gaps = 116/1135 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---- 65
            +FVHL  H+ YS+L+GA  + +++ +     QPA+AITD   ++   E      A     
Sbjct: 2    AFVHLHNHTVYSMLDGATRIKDMVQRAVDLGQPAVAITDHGYMYGVPELGLACDAVNHGT 61

Query: 66   -------------------------------GIQPIIGCQLDIDMQDNLKMTNQ------ 88
                                           G +  +      D Q N+           
Sbjct: 62   PEYKVWSHDKSFLEKGRRDELECPDKDADPRGYEQHMKDLAMWDAQGNIDELKPPLVIKP 121

Query: 89   --------------GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
                           +   P +  +VL     +GY  L++ VS   +        R+ L 
Sbjct: 122  IFGCEVYFTPDDTLARDRKPELYHMVLFAQNEKGYVNLMQTVSEAAVQG-FYYKPRVTLD 180

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH---- 189
             L+    EGLI  +   +G I +         A +   TF+  F     Y+ +Q H    
Sbjct: 181  NLRR-HREGLIASSACIAGIIPKCIDRGEMDKAIEWAETFRDTFEPGNFYIEIQEHGITT 239

Query: 190  --RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
                 D      ++++A    + ++ATN+  +L+ +D    DV+M +   + +   +R  
Sbjct: 240  DSGITDEELSKTLIEIARQVGVKVIATNDFHYLTRDDAPVQDVIMCIGTGSKIDDPNRIR 299

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + Y+K   EM ++F   PEA +NT+EIA +C+  L   + ILP +      D  + 
Sbjct: 300  MEGSEFYMKTEDEMRALFPYCPEACDNTLEIAEKCNVELDWDSIILPNYP---LLDPGET 356

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E++ R +   GL  R       K     D R+R +FE  VI    F+ YFLIVA++++W
Sbjct: 357  HESQFRRECEEGLAKRYGADWDGKEIGGVDIRERFEFEYKVICDKGFAAYFLIVAEYVRW 416

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+N I VGPGRGS AG++ AYA+ IT  DPL   L+FERFL+P+R  MPD D+DF  +R
Sbjct: 417  AKQNGIGVGPGRGSAAGALVAYAMDITTFDPLSNGLMFERFLSPERTEMPDIDMDFDDER 476

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA-- 484
            R EV+ +V+  YG E+V  +IT+ +++AK A+ D  R L  P     RL K++P DP   
Sbjct: 477  RLEVVEHVRQLYGPEKVTHVITYSTIKAKQAINDAARVLDYPVYMGQRLSKMVPGDPGVK 536

Query: 485  -----HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                   +  +    +    EA   D    R+++ +  +EGL R    HA  ++I    +
Sbjct: 537  LKQVLEKIPGKEDMYNPDLVEAYQKDEDARRIIDTALSIEGLTRGEGVHACAVLICRDAV 596

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            ++ VP   D +  + +TQ+    +   GL+K DFLGL+TLT++ K+   + +   + +D+
Sbjct: 597  NEHVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKANIKKNFGIDIDV 656

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IPFDD + + L+++  T G+FQ+ES+GM   ++ M+P   + ++AL++LYRPGP+   
Sbjct: 657  DAIPFDDPKIFELMSSGRTAGVFQVESAGMTATIKNMKPTEYKHVVALIALYRPGPLGAG 716

Query: 659  VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD-VLRR 715
            +V  Y NR NGKE  VS  P +D +L ET G ++YQEQVM I+  + G+S  E+D  +R+
Sbjct: 717  MVTSYINRMNGKEPAVSYDPRLDGILGETYGTMVYQEQVMLISVEMCGFSKGESDSRIRK 776

Query: 716  AMGKKIK------------EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
             + KK               E +   + +++GA KNG  + +A  I++ + +FA Y FNK
Sbjct: 777  PVAKKKIKMLTDQVFKWSDGEDETIYDHWMNGAEKNGYKREVAQKIWDDVLEFASYAFNK 836

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+A YA++  QTAW+K HYP E++AA +T      +KI  +    R   I ++PP +N 
Sbjct: 837  SHSAGYAILVMQTAWLKAHYPNEYMAAVLTSYTGKTDKIVHYVSACRHDGIAVLPPDINE 896

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVL 882
               +F      + + LA I+GVG      I+ E     PF +L DF  RVD+ + NRRV+
Sbjct: 897  SGTEFTATAEGVRFGLAGIRGVGEGVTEAIIAEREKGGPFKNLHDFVERVDASQANRRVI 956

Query: 883  ESLVFAGALDCFGYSRMQLLQSLD-----NIQKYAQWVEKNRTNKHENIF----AHEKGT 933
            E+L+  GA D  GY R QL+  +D     NI   A   +K+R     ++F      E   
Sbjct: 957  EALIKGGAFDSTGYPRRQLMHFVDRDNPENIIDAAVKRQKDRAAGQTSLFDVFGDVEGSG 1016

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK---------------M 978
            F   +        +  ++   E+ VLG Y S HPL  Y+  L K               M
Sbjct: 1017 FEVIVPEPDGQEWDRHMKLSFEKEVLGIYVSDHPLRPYEYALAKAREFTLSQIDTGFETM 1076

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            G  G   +     G     A MV S  ++ T+ G  +  VT  +   E     FP
Sbjct: 1077 GPAGNAVNQEIPEGKPYWWAGMVSSVSKRVTKNGDPMAIVTLEDMEGEATVVIFP 1131


>gi|257790804|ref|YP_003181410.1| DNA polymerase III, alpha subunit [Eggerthella lenta DSM 2243]
 gi|257474701|gb|ACV55021.1| DNA polymerase III, alpha subunit [Eggerthella lenta DSM 2243]
          Length = 1153

 Score =  949 bits (2453), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/1048 (31%), Positives = 542/1048 (51%), Gaps = 44/1048 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA----- 64
            +FVHL  H+ YSLL+G   + +++ + A    PA+AI+D   +    +  +         
Sbjct: 2    AFVHLHNHTEYSLLDGHTHIYDMVKRAADLDMPAVAISDHGVMSGVPQLCEMCDKVEAET 61

Query: 65   -AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
               ++PI GC++     + L+   +     P +  ++LL  T EGY  L++LVS  ++ D
Sbjct: 62   GKRVKPIYGCEVYFTTDEELRKDTK-----PKLYHLLLLAKTNEGYHNLVKLVSESHV-D 115

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRL 182
                  R   S LQ+ G +G+I  +   +G I +         A +    F   F     
Sbjct: 116  NFYYKPRTTFSMLQKYG-KGIIGSSACIAGIIPKLLDNRQVDEAVEWAKKFASCFEPGDF 174

Query: 183  YVNLQRHRGYDRY------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            Y+ LQ                  +  +A    L  +ATN+  +L+ ED  A D ++ +  
Sbjct: 175  YIELQNQGIRTDAGFTQTELNHMLTDVAKAAGLKTIATNDFHYLTREDARAQDYMLCIGT 234

Query: 237  STVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                +  +R R   D  Y+K   EM     D PEA + TVE+A + + +L+    ILPRF
Sbjct: 235  GAAFNDANRMRFENDQFYMKTEEEMREALKDFPEACDTTVEVAEKVNVVLE-RDSILPRF 293

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
               E +     EE+  R +   GL               Q+ ++R D+E+ +I +  F  
Sbjct: 294  PLPEGE----TEESYFRKRVQEGLVKHYGNPV------PQEAQERADYEMGIIIQQGFPA 343

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV ++I+WA+   I VGPGRGS AG++ AYA+ IT +DPL   LLFERFL+P+R+ M
Sbjct: 344  YFLIVQEYIEWARSQGIGVGPGRGSAAGAIVAYAMDITALDPLSNGLLFERFLSPERVEM 403

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF Q RR+EVI ++++ YG + V+Q+ITFG+LQAK A+RD  R L  PYS  D++
Sbjct: 404  PDIDVDFEQGRREEVISHIKDVYGEDHVSQVITFGTLQAKNAVRDAARVLDYPYSTGDKI 463

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             K+I ++    +  +A+A +   ++A   +  V  +++ +  +EG  R    HA   +I 
Sbjct: 464  TKMIGDELGITID-KALATNPDLKKAYETEEDVKAVIDAALSIEGHVRGEGVHACATIIC 522

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
              P++  VPM RD +    +TQ++  +  + GL+K DFLGL+TL +L  +   + QR   
Sbjct: 523  RDPMADHVPMKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLDVLTIACRNIEQRFGT 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            KV    IP DD   + L+ +    G+FQ+E +        + P    DI+A ++L RPGP
Sbjct: 583  KVIPEDIPIDDEGAFKLMQSGNMDGLFQVEGALYVSLFARLPPTRFSDIVASIALNRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +++ +V  Y    +GK  I      + P+L+ET G ++YQEQ+MQI+  +SG+S  +AD 
Sbjct: 643  LESGMVEDYIKVASGKTSIHYYDERLRPILEETYGTMVYQEQIMQISMAMSGFSAGKADK 702

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LR+AMGKK  + M   +E + +GA +NG    IA  I+E   KFA Y FNKSH+AAYA++
Sbjct: 703  LRKAMGKKKLDVMRALQEDWNTGAVENGYPLEIAKQIWEDAEKFAKYAFNKSHSAAYAIL 762

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
              +TA++K HYP +F+AA ++  M N +++ ++        I ++PP +N+   +F   D
Sbjct: 763  VMRTAYLKAHYPNDFMAAVLSSYMGNTDRLIRYIASCNHSGIPVLPPDINSSNAEFTPTD 822

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              + + L  ++GVG   A  I+E   A+ PF SL DF +R+D+K  NR+ LE+L+  GA 
Sbjct: 823  EGVRFGLVGVRGVGANVAEAIIEEREANGPFTSLHDFVNRLDAKCYNRKTLEALIKGGAF 882

Query: 892  DCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSV 945
            D  GY+R QL+  +D   + + A   +K+R +   ++F          F +++       
Sbjct: 883  DSTGYTRKQLMYFVDETPLLESASKRQKDRESGQVSMFDLFGDDPDSGFEEEVPEPDGVE 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSK 1004
                     E+ ++  Y S HPL  Y+  + +M      +     +   +     M+ + 
Sbjct: 943  WPKRQLLTFEKEIMKIYVSDHPLRPYEGTIARMTKFSLGDLAERTKEIKSAVFVGMISNV 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              K T++G+++   T  +     E   F
Sbjct: 1003 VTKLTKRGTKMATFTLEDTTGHVECICF 1030


>gi|149371985|ref|ZP_01891304.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49]
 gi|149355125|gb|EDM43686.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49]
          Length = 1476

 Score =  949 bits (2453), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1097 (32%), Positives = 557/1097 (50%), Gaps = 86/1097 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA---CAAG 66
             F HL  HS YS+L+   S  ++++   AD Q A+A+TD+ N+  A  FS+      AA 
Sbjct: 261  PFAHLHNHSQYSILQSTSSTQDLVNAAIADNQRAVALTDSGNMMGAFHFSRAVNNHNAAK 320

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPF----------------------------PTVPS 98
            ++         +  D+     +G+ P                                  
Sbjct: 321  LKEYEAALAAYEAVDDTATDFEGQVPDKPEKPIPVTAIVGCEFFVCQDHLDKSNKDNGYQ 380

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            IV+L     GY  L ++ S  +         RI    +++   + +I+L+GG  G I   
Sbjct: 381  IVILAKNKAGYHNLAKMSSIAFTEG-FYYVPRIDREVIKKY-RDDIIILSGGMYGEISSK 438

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNS 217
                    AE+ LL +K+ FGD  Y+ + RH   D  R +Q ++  +  H++ L+A NN+
Sbjct: 439  ILNVGENQAEEALLWWKEEFGDDFYLEILRHGQEDEDRVNQTIIDFSRKHDVKLIAANNT 498

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEA 270
             ++ +E   AHD+L+ V      +                ++Y K++ EM  IF DLPEA
Sbjct: 499  YYIDKESANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSQDEMKLIFKDLPEA 558

Query: 271  LENTVEIARRCSFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVR 322
            + N  E+  +          +LP F         E E D  ++ E   L++    G + R
Sbjct: 559  IINIAEVIEKIEPYSLQRDVLLPVFDIPDEFKVAEDEIDGGKRGENAFLKHLTYIGAKER 618

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                    G    + ++RLDFEL+VIA   + GYFLI  DFI+ A+K ++ VGPGRGS A
Sbjct: 619  Y-------GEITDEIKERLDFELDVIANTGYPGYFLITEDFIREARKLDVSVGPGRGSAA 671

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GSV AY L IT+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V++YV +KYG  +
Sbjct: 672  GSVVAYCLKITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMQYVIDKYGGNQ 731

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI-ADDSRFREA 501
            VAQIIT+G++ AK+++RD  R L +P ++ D + KLIPN        +     +   ++ 
Sbjct: 732  VAQIITYGTMAAKSSIRDTARVLDLPLNEADHVAKLIPN---MTKLAKVFGYSEKELKQK 788

Query: 502  RLAD--PSVDRLLEI-------------SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              +D  P V  L+               ++KLEG  R+   HA G++I    ++  VP+ 
Sbjct: 789  FRSDELPKVLELIATSEGTDLTAETINQAKKLEGSVRNTGIHACGVIITPSDITNYVPVS 848

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                SDL VTQF+   +E AGL+K DFLGLKTLTL++ ++  +  +  + +D    P DD
Sbjct: 849  TAKDSDLYVTQFDNSVVEDAGLLKMDFLGLKTLTLIKDTVKLVKHKHGIDLDPDNFPLDD 908

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              TY L     T+GIFQ ES+GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RK
Sbjct: 909  VPTYELFQRGETVGIFQYESAGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFIRRK 968

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E+I    P ++  LKET G+ +YQEQVM ++Q L+ +S  +ADVLR+AMGKK K  +
Sbjct: 969  NGEEEIEYDLPAMEEYLKETYGITVYQEQVMLLSQKLANFSKGDADVLRKAMGKKQKAVL 1028

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            DK K RFI  A  NG        I++    FA Y FNKSH+  YA I+YQTA++K HYP 
Sbjct: 1029 DKMKPRFIENAVGNGHDAEKLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPA 1088

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844
            E++AA ++  M +++++  F ++ ++  ++I+ P VN     F V     + + + AIKG
Sbjct: 1089 EYMAAVLSNNMRDIKQVTFFMEECKRMGLEILGPDVNESFFKFSVNDRGAVRFGMGAIKG 1148

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG      I+E   +  + S+ D   R+D +  N++  E+L  AG  D F   R Q L  
Sbjct: 1149 VGANAVATIVENREEAKYKSIFDMAKRIDLRSANKKAFENLALAGGFDSFNAHRAQYLHQ 1208

Query: 905  -------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
                   L+ + KYA   ++++ +   ++F         +  +       +  +   E+ 
Sbjct: 1209 DADGQTFLEKVLKYANKYQESKNSSQVSLFGESSDVQIPEPEVPPCEEWGTMKKLRQERE 1268

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            V+G Y SGHPLD +K  +R        +   +    G  +    +V   Q ++++ G   
Sbjct: 1269 VVGVYISGHPLDDFKIEMRSFANCKVADFNELEQHVGKEMSFGGIVADVQHRESKAGKGW 1328

Query: 1016 GWVTFSEPAKEYEANFF 1032
               T  +    YE   F
Sbjct: 1329 AIFTVEDYDDSYEFKIF 1345


>gi|15618576|ref|NP_224862.1| DNA polymerase III subunit alpha [Chlamydophila pneumoniae CWL029]
 gi|15836198|ref|NP_300722.1| DNA polymerase III subunit alpha [Chlamydophila pneumoniae J138]
 gi|16752374|ref|NP_444633.1| DNA polymerase III subunit alpha [Chlamydophila pneumoniae AR39]
 gi|33242023|ref|NP_876964.1| DNA polymerase III subunit alpha [Chlamydophila pneumoniae TW-183]
 gi|14194705|sp|Q9Z7N8|DPO3A_CHLPN RecName: Full=DNA polymerase III subunit alpha
 gi|4376966|gb|AAD18805.1| DNA Polymerase III Alpha [Chlamydophila pneumoniae CWL029]
 gi|7189016|gb|AAF37967.1| DNA polymerase III, alpha subunit [Chlamydophila pneumoniae AR39]
 gi|8979038|dbj|BAA98873.1| DNA polymerase III alpha [Chlamydophila pneumoniae J138]
 gi|33236533|gb|AAP98621.1| DNA-directed DNA polymerase III alpha chain [Chlamydophila pneumoniae
            TW-183]
          Length = 1240

 Score =  949 bits (2453), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1077 (32%), Positives = 574/1077 (53%), Gaps = 60/1077 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+ + + K      PA+A+TD  NL+ A++F ++    GIQP
Sbjct: 2    TWIPLHCHSQYSVLDAMSSIKDFVAKGQEFGIPALALTDHGNLYGAVDFYKECTQKGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  I          + ++       ++LL    +GY+ L  L S  +         
Sbjct: 62   IIGCECYIAPGSRFDKKKEKRSR--AAHHLILLCKNEQGYRNLCILTSLAFTEG-FYYFP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L++  +EGLI L+G  S  +  A    S +     L  F+ LF D  +  +Q H
Sbjct: 119  RIDKDLLRQY-SEGLICLSGCLSSSVSDAALK-SPEALLLELQWFQDLFKDDYFTEVQLH 176

Query: 190  RGYDR----------------------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +  +                          + V++ +    +P VATN+  +++  D++A
Sbjct: 177  KMSEESIAGFKEEWLKQEYYSLIEKQIKVNTAVLEASKRLGIPTVATNDIHYINANDWQA 236

Query: 228  HDVLMAVAHSTV----------VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+ V                + K +   + ++Y K+ ++M  +F D+PE + NT+E+
Sbjct: 237  HEILLNVQSGETVRIAKQNTHIPNPKRKVYRSREYYFKSPAQMAELFKDIPEVISNTLEV 296

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQGAI- 328
            A+RC F         P ++ +    +    E          L+  A   L  + +   + 
Sbjct: 297  AKRCDFTFDFSKKHYPIYVPESLKTLNSYTEEDRYQASAVFLKQLAEEALPKKYSSEVLA 356

Query: 329  ------AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                           ++R+D E+ +I       Y LIV D I WAK N IPVGPGRGSGA
Sbjct: 357  HIAKKFPHRDPIDIVKERMDMEMAIIIPKGMCDYLLIVWDIIHWAKANGIPVGPGRGSGA 416

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + 
Sbjct: 417  GSVLLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDN 476

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            VAQIITFG+++AK A++DVGR L M  S+V+ + K IP+   +    +A+  D    +  
Sbjct: 477  VAQIITFGTMKAKMAVKDVGRTLDMALSKVNHIAKHIPD--LNTTLSKALETDPDLHQLY 534

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
            + D    ++++++  LEG  R+   HAAG++I    L+  +P+     S +  TQ++MK 
Sbjct: 535  INDAESAQVIDMALCLEGSIRNTGVHAAGVIICGDQLTNHIPICISKDSTMITTQYSMKP 594

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            +E  G++K D LGLKTLT +  ++  +  + G  + ++ +P DD  T+ LL    T+GIF
Sbjct: 595  VESVGMLKVDLLGLKTLTSINIAMSAIEKKTGQSLAMATLPLDDATTFSLLHQGKTMGIF 654

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            Q+ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++ +
Sbjct: 655  QMESKGMQELAKNLRPDLFEEIIAMGALYRPGPMDMIPSFINRKHGKEIIEYDHPLMESI 714

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  ++M++++E+F   A  NGI
Sbjct: 715  LKETYGIMVYQEQVMQIAGALASYSLGEGDVLRRAMGKKDFQQMEQEREKFCKRACNNGI 774

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
               +A  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK
Sbjct: 775  DPELATVIFDKMEKFAAYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDSDDIEK 834

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK 860
            I K  ++A+   I I+PP +N     F   D  I +++ AIKG+G      I+E      
Sbjct: 835  IGKLIREAQSMGIPILPPHINVSSNHFVATDEGIRFAMGAIKGIGRGLIESIVEERDHHG 894

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            P++S+ DF  R D KK++++ +ESL+ AG  DCF  +R  LL S++ + +     +K   
Sbjct: 895  PYESIRDFIQRSDLKKVSKKSIESLIDAGCFDCFDSNRDLLLASVEPLYEAIAKDKKEAA 954

Query: 921  NKHENIFAHEKGTFSDKITL---EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
            +     F        +++ +   +     +     + E+ +LG Y + HP+D  +  L +
Sbjct: 955  SGVMTFFTLGAMDRKNEVPICLPKDIPTRSKKELLKKEKELLGIYLTEHPMDTVRDHLSR 1014

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +    E      G+ +R   ++     K  ++   +   +  S+    YE   +P
Sbjct: 1015 LSVVLAGEFENLPHGSVVRTVFIIDKVTTKISSKAQKKFAVLRVSDGIDSYELPIWP 1071


>gi|269302450|gb|ACZ32550.1| DNA polymerase III, alpha subunit [Chlamydophila pneumoniae LPCoLN]
          Length = 1240

 Score =  948 bits (2451), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/1077 (32%), Positives = 574/1077 (53%), Gaps = 60/1077 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+ + + K      PA+A+TD  NL+ A++F ++    GIQP
Sbjct: 2    TWIPLHCHSQYSVLDAMSSIKDFVAKGQEFGIPALALTDHGNLYGAVDFYKECTQKGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  I          + ++       ++LL    +GY+ L  L S  +         
Sbjct: 62   IIGCECYIAPGSRFDKKKEKRSR--AAHHLILLCKNEQGYRNLCILTSLAFTEG-FYYFP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L++  +EGLI L+G  S  +  A    S +     L  F+ LF D  +  +Q H
Sbjct: 119  RIDKDLLRQY-SEGLICLSGCLSSSVSDAALK-SPEALLLELQWFQDLFKDDYFTEVQLH 176

Query: 190  RGYDR----------------------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +  +                          + V++ +    +P VATN+  +++  D++A
Sbjct: 177  KMSEESIAGFKEEWLKQEYYSLIEKQIKVNTAVLEASKRLGIPTVATNDIHYINANDWQA 236

Query: 228  HDVLMAVAHSTV----------VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+ V                + K +   + ++Y K+ ++M  +F D+PE + NT+E+
Sbjct: 237  HEILLNVQSGETVRIAKQNTHIPNPKRKVYRSREYYFKSPAQMAELFKDIPEVISNTLEV 296

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQGAI- 328
            A+RC F         P ++ +    +    E          L+  A   L  + +   + 
Sbjct: 297  AKRCDFTFDFSKKHYPIYVPESLKTLNSYTEEDRYQASAVFLKQLAEEALPKKYSSEVLA 356

Query: 329  ------AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                           ++R+D E+ +I       Y LIV D I WAK N IPVGPGRGSGA
Sbjct: 357  HIAKKFPHRDPIDIVKERMDMEMAIIIPKGMCDYLLIVWDIIHWAKANGIPVGPGRGSGA 416

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GSV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + 
Sbjct: 417  GSVLLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDN 476

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            VAQIITFG+++AK A++DVGR L M  S+V+ + K IP+   +    +A+  D    +  
Sbjct: 477  VAQIITFGTMKAKMAVKDVGRTLDMALSKVNHIAKHIPD--LNTTLSKALETDPDLHQLY 534

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
            + D    ++++++  LEG  R+   HAAG++I    L+  +P+     S +  TQ++MK 
Sbjct: 535  INDAESAQVIDMALCLEGSIRNTGVHAAGVIICGDQLTNHIPICISKDSTMITTQYSMKP 594

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            +E  G++K D LGLKTLT +  ++  +  + G  + ++ +P DD  T+ LL    T+GIF
Sbjct: 595  VESVGMLKVDLLGLKTLTSINIAMSAIEKKTGQSLAMATLPLDDATTFSLLHQGKTMGIF 654

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            Q+ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++ +
Sbjct: 655  QMESKGMQELAKNLRPDLFEEIIAMGALYRPGPMDMIPSFINRKHGKEIIEYDHPLMESI 714

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            LKET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  ++M++++E+F   A  NGI
Sbjct: 715  LKETYGIMVYQEQVMQIAGALASYSLGEGDVLRRAMGKKDFQQMEQEREKFCKRACNNGI 774

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
               +A  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK
Sbjct: 775  DPELATVIFDKMEKFAAYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDSDDIEK 834

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK 860
            + K  ++A+   I I+PP +N     F   D  I +++ AIKG+G      I+E      
Sbjct: 835  VGKLIREAQSMGIPILPPHINVSSNHFVATDEGIRFAMGAIKGIGHGLIESIVEERDHHG 894

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            P++S+ DF  R D KK++++ +ESL+ AG  DCF  +R  LL S++ + +     +K   
Sbjct: 895  PYESIRDFIQRSDLKKVSKKSIESLIDAGCFDCFDSNRDLLLASVEPLYEAIAKDKKEAA 954

Query: 921  NKHENIFAHEKGTFSDKITL---EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
            +     F        +++ +   +     +     + E+ +LG Y + HP+D  +  L +
Sbjct: 955  SGVMTFFTLGAMDRKNEVPICLPKDIPTRSKKELLKKEKELLGIYLTEHPMDTVRDHLSR 1014

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +    E      G+ +R   ++     K  ++   +   +  S+    YE   +P
Sbjct: 1015 LSVVLSGEFENLPHGSVVRTVFIIDKVTTKISSKAQKKFAVLRVSDGIDSYELPIWP 1071


>gi|145652210|gb|ABP88150.1| putative DnaE [Borrelia lonestari]
          Length = 1072

 Score =  948 bits (2451), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/959 (37%), Positives = 553/959 (57%), Gaps = 23/959 (2%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  +          ++LL     GY+ L++L S  YL        RI  S +++  +
Sbjct: 1    EFTHIKKNDELGKPYYHLILLAKNELGYKNLLKLTSISYLEG-FYYRPRIDKSDIEKY-S 58

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQV 200
            +GLI  +    G I +         A+  +L FK +FGD  Y+ LQRH    +     ++
Sbjct: 59   KGLICTSACIGGIIPQLIIAGRFDDAKNEILWFKTVFGDDFYLELQRHGIKQQDMVNKKL 118

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
            +  +    +PL  +N+S ++++ED +A D+++ +   + ++  +R    T + Y+K++ E
Sbjct: 119  IGYSKELNVPLTVSNDSHYVNKEDAKAQDIIICIGTGSKINDPNRLKMETDEFYIKSQEE 178

Query: 260  MVSIFSDLPEALENTVEIARRC-SFILQVHAPILPRF-IEKECDDIQKEEENELRNKAVA 317
            M  +F DLPEAL NT+EIA +C  F ++   PI P + I  E   +       L      
Sbjct: 179  MYELFKDLPEALANTLEIAEKCDEFEIKFPGPIFPEYQIPSEFSTLG----QYLEYLTFE 234

Query: 318  GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
            GL+ R               ++R  +EL+ I +M F  YFLIV DFI++A  N IPVGPG
Sbjct: 235  GLKFRY-------DNINDSIKERALYELSTIIKMGFEAYFLIVWDFIKFAHDNGIPVGPG 287

Query: 378  RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
            RGSGAGS+ AYAL +TDIDPL+++LLFERFLNP+R+SMPDFDIDFC + RDEVI+YV +K
Sbjct: 288  RGSGAGSIVAYALRVTDIDPLKYNLLFERFLNPERVSMPDFDIDFCFEGRDEVIKYVTSK 347

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            YG +RVAQIITFG+L+ KA  +DVGR L +P+S+ + + KLIP+ P   V L+ +  D  
Sbjct: 348  YGEDRVAQIITFGTLKPKAVFKDVGRVLDIPFSESNEITKLIPDGPK--VCLKEVFADGA 405

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
             R         + L+  +  LEG+ RH STHAAGIVI    L+  VP+Y+D + +   TQ
Sbjct: 406  LRAYLNKGSIYNELMNAALVLEGMNRHVSTHAAGIVIAKTALTDYVPLYKDYKQNTVSTQ 465

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT 617
            + M  +E  GL+K DFLGLKTLTL++ +   +        ++ I   D +T+ +L    +
Sbjct: 466  YTMDLLEDCGLVKMDFLGLKTLTLIKNAEKLIRITNPDFSIANISDSDPKTFKMLAEGRS 525

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
              +FQ ES GM+Q L   +PD IED+IAL +LYRPGP+  I  + + K G ++I   HP 
Sbjct: 526  ASVFQFESEGMQQVLREAKPDSIEDLIALNALYRPGPMQFIPQFISAKTGIKRIKYPHPD 585

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            +  +LK T GVI+YQEQVM++A++++G+SL +AD+LRRAMGKK ++EM++ K  FI GA 
Sbjct: 586  LKDVLKPTYGVIVYQEQVMEVAKIIAGFSLGKADILRRAMGKKKEDEMNRMKVDFIKGAI 645

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
              G  +++A++IFELL  FA+YGFNKSHAAAY++I+YQTA++K +YP  F+AA++T E++
Sbjct: 646  SKGYDESLAIDIFELLKPFANYGFNKSHAAAYSLIAYQTAYLKANYPENFMAANLTNEIN 705

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
            N EK+  + ++A+   I ++ P +N    +F+V D +I Y L  IK +G +    I+   
Sbjct: 706  NTEKLSYYIEEAKLMGIDVLKPDINQSFKEFRVVDCKISYGLNGIKNIGGSMVDLIIAER 765

Query: 858  -ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
              +  + S EDF  RVD K +N++ LES + +G  D  G +R  L ++LD +       +
Sbjct: 766  QKNSEYKSFEDFVRRVDDKVINKKFLESAIKSGLFDSLGQNRRTLFENLDRLIDVVTQDK 825

Query: 917  KNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
             +R     ++F+    +       + + F   +       E+ +LGFY SGHPLD YK  
Sbjct: 826  NDRKFGQNSLFSIFGPQDVAYKSFSYDIFEEYSYIELLGFEKELLGFYVSGHPLDPYKTE 885

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGWVTFSEPAKEYEANFF 1032
            +         E +A  + + ++ A ++ S +   T++ + ++ +    +     +   F
Sbjct: 886  IECFTDFNILEDLAIKKDSTVKFAGILNSIRVIHTKRNNAKMAFAIIEDFKGVMDIVVF 944


>gi|319901087|ref|YP_004160815.1| DNA polymerase III, alpha subunit [Bacteroides helcogenes P 36-108]
 gi|319416118|gb|ADV43229.1| DNA polymerase III, alpha subunit [Bacteroides helcogenes P 36-108]
          Length = 1265

 Score =  948 bits (2451), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1147 (30%), Positives = 568/1147 (49%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSAP 62

Query: 61   ------------------------------------KACAAGIQPIIGCQLDIDMQDNLK 84
                                                +A +   +P+IGC++ +       
Sbjct: 63   RGEIKELKKRIAGIESGEIECEDREMEIAGCRAKIAEAESKLFKPVIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVS  +         R   + L++   EGL
Sbjct: 120  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRNELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +    +  + AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IICSACIGGEVPKKIINDRLEEAEEAIRWYKNLFGDDYYLELQRHKATVPRANHEAYPMQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   +++++ A  + + ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  QKANAKLLEYAKKYNIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K ++EM ++F D+PEAL NT+EI  +  +    HAPI+P F   E    ++E       
Sbjct: 298  MKTKAEMNALFEDIPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRKKYSE 357

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L   A  G +      
Sbjct: 358  KDLFDEFTQDENGNVVLDEDAAKAKIKRLGGYEKLYRIKLEADYLAKLAFDGAKKLYGDP 417

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                   + + ++R+ FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS 
Sbjct: 418  L------SDEVKERMIFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V  KYG E+VA 
Sbjct: 472  VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRL KL+P+  P   ++L+ AI      + A  
Sbjct: 532  IITYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEA 591

Query: 504  A-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558
            + DP V   L+ ++ LEG  R    HA G +I    ++  VP+     ++    + VTQ+
Sbjct: 592  SPDPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL+++++++  +   RGV++D+  I   D  TY L     T
Sbjct: 652  EGSVIEDTGLIKMDFLGLKTLSIIKEAVANVRLHRGVELDIDKISIKDPATYKLYCDGRT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPI 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI+G  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQ 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + 
Sbjct: 832  KNGHEPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLS 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEA 856
            N+  I K   + +   I  + P VN   + F V       + L A+KGVG    + IME 
Sbjct: 892  NITDITKLMDECKAMGINTLGPDVNESNLKFTVNREGNIRFGLGAVKGVGEGAVQSIMEE 951

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907
               + P+  + DF  RV+    N++ +E L  AG  D F    R Q           ++ 
Sbjct: 952  REKNGPYKGIFDFVQRVNLNACNKKNIECLALAGGFDSFPELKREQYFAVNSKNEIFIET 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         +      +   R   E+ ++G Y S HP
Sbjct: 1012 LVRYGNRYQADQAAAANSLFGGENVVDIATPEILPAERWSDLDRLNRERDLVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  +L  +      E      + G  I +  +V S ++  ++ G+  G     + + 
Sbjct: 1072 LDEYAVVLEHVCNTRMAEVEDKQALVGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSG 1131

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1132 SAEFPFF 1138


>gi|305681335|ref|ZP_07404142.1| DNA polymerase III subunit alpha [Corynebacterium matruchotii ATCC
            14266]
 gi|305659540|gb|EFM49040.1| DNA polymerase III subunit alpha [Corynebacterium matruchotii ATCC
            14266]
          Length = 1203

 Score =  948 bits (2450), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/1074 (30%), Positives = 527/1074 (49%), Gaps = 49/1074 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +   + K  SFVHL  H+ YS+L+G   ++ + ++       A+ +TD  N+F +  F +
Sbjct: 14   MMASMAKKSSFVHLHNHTEYSMLDGMAKIDMLAEEATRLGMSAVGMTDHGNMFGSDSFYR 73

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQ----------GKTPFPTVPSIVLLVSTAEGYQ 110
                AGI+PIIG +  +       M  Q            +         ++  TAEG  
Sbjct: 74   AMTKAGIKPIIGIEAYLAPGSRFDMKRQRWGDESQKSDDVSASGAYLHQTMIAETAEGLH 133

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L  L S      Q  +  R+    + E    G+I  TG  SG I           A + 
Sbjct: 134  NLFYLSSMASYEGQLGKWPRMDAELIAE-HATGIIGTTGCPSGDIQTRLRLGQFDKALET 192

Query: 171  LLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
               ++ ++  D  ++ L  H    +    S+++++    +LP + TN+  ++ E    AH
Sbjct: 193  AAMWQDIYGRDNFFLELMDHGLNIENRVRSELLEIGRKLDLPPLVTNDCHYVLESQAHAH 252

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYL-KNRSEMVSIFSDL-PEALENTVEIARRCSFILQ 286
            +V++ V     +S  DR +     Y  K+  +M  ++ DL P+A +NT+ IA R      
Sbjct: 253  EVMLCVQTGKTMSDPDRFKFDGTGYFVKSAEQMRELWDDLVPDACDNTLWIAERVQDYSS 312

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
            +        +              LR++ + GL  R             +Y +R ++E+ 
Sbjct: 313  IWEAHPYDRMPIADVPEGHTPTTWLRHQVLDGLRDRF-----DGAEVPANYIERAEYEIG 367

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI    +  YFLIVA+ I+ A+   I VGPGRGS AGS+ AYALTIT+IDP+   LLFER
Sbjct: 368  VIDMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGSLVAYALTITNIDPIHHGLLFER 427

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA-- 464
            FLNP+R S PD DIDF   RR E+IRY   ++G +++AQ+ITFG+++ K A++D  RA  
Sbjct: 428  FLNPERPSAPDIDIDFDDRRRGEMIRYASERWGEDKIAQVITFGTVKTKQAIKDSARALY 487

Query: 465  LQMPYSQVDRLCK-LIPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEIS 515
             Q  Y   DR+ K L P   A  +SL  I D            R+    DP V ++ + +
Sbjct: 488  GQPGYQIADRITKVLPPPIMAKDISLAGIMDPEHDRYTEAGEVRQLIETDPDVRQIYDTA 547

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + LEG+ R A  HA  +++   PL   +PM++       +T +     E  GL+K DFLG
Sbjct: 548  RGLEGVVRQAGVHACAVIMASVPLLDCIPMWKRAADGALITGWPYPACEAIGLLKMDFLG 607

Query: 576  LKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L+ LT++  +L+ +   R   +DL  +   D   Y LL    TLG+FQL+S GM++ L+ 
Sbjct: 608  LRNLTVIGDALENIKINRDETIDLENLAITDPNVYKLLARGDTLGVFQLDSGGMQELLKR 667

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGV 688
            MQP    DI+A ++LYRPGP+  +  + Y +RKNG++ I  IHP ++     +L ET G+
Sbjct: 668  MQPTEFNDIVAALALYRPGPMGVNAHLDYADRKNGRKPITPIHPELEEALKDILDETYGL 727

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQ+M+I++ ++ Y+  EAD  R+AMGKK  E +  + E+F +G   NG SK     
Sbjct: 728  IVYQEQIMEISRRVANYTAGEADGFRKAMGKKKPEVLAAEYEKFSAGMFSNGYSKDAVDA 787

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++  +  FA Y FNKSHAA Y ++SY TA++K +Y  E++AA +T   D  +K   +  +
Sbjct: 788  LWGTIEPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVSDKKDKSAIYLAN 847

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLED 867
             R   I ++ P VN    +F      I + L A++ VG      I+    A   +    D
Sbjct: 848  CRHLGIAVLSPDVNESAYNFLPVGQDIRFGLGAVRNVGEDVVASIVRERKAKGLYKDFTD 907

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            +  ++D    N+RV ESL+ AGA D  GYSR  L+   ++    A   +K       ++F
Sbjct: 908  YLEKIDLTACNKRVTESLIKAGAFDSMGYSRKGLMMVFEDAVDAAIGPKKAMDKGQFDLF 967

Query: 928  AHEKGTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
            +   G          I++      +   +   E+ +LG Y SGHPLD ++  L       
Sbjct: 968  SALGGESEVTENVFSISVPD-DTWDRKHQLALERDMLGLYVSGHPLDGFEEALDAQVDTS 1026

Query: 983  YE--ESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
                 S     G  +++  ++ +  ++ ++K GS    VT  +    + E   F
Sbjct: 1027 LSVVASEELKNGAEVQIGGIISAVDRRVSKKDGSPWAIVTIEDQHGVQVEMLVF 1080


>gi|255530778|ref|YP_003091150.1| DNA polymerase III subunit alpha [Pedobacter heparinus DSM 2366]
 gi|255343762|gb|ACU03088.1| DNA polymerase III, alpha subunit [Pedobacter heparinus DSM 2366]
          Length = 1476

 Score =  948 bits (2450), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1109 (33%), Positives = 569/1109 (51%), Gaps = 103/1109 (9%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS------- 59
            K  +FVHL  H+ +S+L+  +++ +++   AA + PA+AITD  N+  A  F        
Sbjct: 257  KDAAFVHLHNHTQFSVLQSTINIPSLIKATAAHKMPAVAITDHANMMGAFHFVSQVLNHN 316

Query: 60   --------------QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                          + A    I+PIIGC+        +   ++ K        +V L   
Sbjct: 317  KGVEARNAAAIEKGETAEEQTIKPIIGCEFF------VCENHEDKKRKDDGYQVVFLAKN 370

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
              GY  L ++ S  Y         RI  + + E   E +++L+G   G I         +
Sbjct: 371  KAGYHNLAKMSSIAYTRG-FYYIPRIDKA-IVEQYKEDILVLSGNLYGEISSKLLNMGEK 428

Query: 166  VAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEED 224
             AE+ LL +K  FGD  Y+ L RH   D     + +V LA  HE+ L+ATNN+ +++++D
Sbjct: 429  QAEEALLWWKSQFGDDFYIELMRHNQEDEDIVNATLVNLAKKHEVKLIATNNTYYINKKD 488

Query: 225  YEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
              AHD+L+ V      +                ++Y K+  EM S+F+DLPEA+ N  E+
Sbjct: 489  ANAHDILLCVKEGEKQATPIGRGRGYRFGLPNQEYYFKSPEEMKSLFADLPEAISNIQEV 548

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQGAIA 329
              +          +LP+F   E   ++++EE+         LR+    G + R       
Sbjct: 549  VDKIEAYKLAREVLLPKFDIPEEFLVKEDEEDGGKRGENKFLRHLTYVGAKKRY------ 602

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
             G    D  +RLDFEL  I +  + GYFLIV DFI  A+  ++ VGPGRGS AGS  AY 
Sbjct: 603  -GEITDDIAERLDFELQTIEKTGYPGYFLIVQDFIAEARNLDVSVGPGRGSAAGSAVAYC 661

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L IT+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV  KYG  +VAQIIT+
Sbjct: 662  LGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVIKKYGSNQVAQIITY 721

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DPAHPVSLQAIADDSRFREARLADPSV 508
            G++ AK++++D  R L +P  + +++ KLIPN   A   +L    D+   +EA  AD   
Sbjct: 722  GTMAAKSSVKDTARVLDLPLFEAEKIAKLIPNMKLAKIFTL----DEKSLKEALRADEYE 777

Query: 509  D---------------RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                            + LE +Q LEG  R+   HA G++I    ++  VP+     SDL
Sbjct: 778  KILELKALAGAKDLGAKTLEQAQILEGSLRNTGIHACGVIITPSDITNFVPVATAKDSDL 837

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLL 612
             VTQF+   +E AGL+K DFLGLKTLTL++ ++  +  R  + +D    P DD  TY L 
Sbjct: 838  YVTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKLVKSRHNIDLDPDNFPIDDERTYELF 897

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
                T+GIFQ ES+GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RKNG+E+I 
Sbjct: 898  QRGETIGIFQYESTGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEEIK 957

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
                  +  LKET G+ +YQEQVM ++Q L+G++  EADVLR+AMGKK K+ +DK K +F
Sbjct: 958  YDLDACEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQKDVLDKMKPKF 1017

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I  A++ G    I   I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA +
Sbjct: 1018 IKQAAEKGHDAVILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVL 1077

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTAR 851
            +  M +++++  F ++ +Q  +Q++ P VN   + F V     + + L+ IKGVG     
Sbjct: 1078 SNNMSDIKQVAFFMEECKQMGVQVLGPDVNESDIKFSVNAQGEVRFGLSGIKGVGEKAVE 1137

Query: 852  HIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL--------L 902
             I+E       +  L DF  R +++ +N++  ES V++GA D FGY R Q         +
Sbjct: 1138 SIIEDRLEKGMYKDLYDFARRSNTRTVNKKAYESFVYSGAFDAFGYHRAQYFFVGINDKM 1197

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              ++ + KYA   + N ++   ++F         +  L      +   + + E+  +G +
Sbjct: 1198 NGIEKVIKYANDFQNNESSSQSSLFGGSVADLILEPALPVAPEWSLIDKLKYEKDAIGIF 1257

Query: 963  FSGHPLDVYKPILRKMG-----IKGYEESVATIRGNNIRLAAMVVSKQ------------ 1005
             SGHPLD YK  L++              + T   N   + A   S +            
Sbjct: 1258 LSGHPLDNYKLELKEFCQHKVKCLSLVNKIRTGDTNE-EVLAEFESIKNRELVVGGLVVV 1316

Query: 1006 --QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              Q+ T+ G   G + F +     E   F
Sbjct: 1317 AAQRMTKTGKPFGTLVFEDYDDSCELALF 1345


>gi|227488551|ref|ZP_03918867.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum
            ATCC 51867]
 gi|227543156|ref|ZP_03973205.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum
            ATCC 51866]
 gi|227091445|gb|EEI26757.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum
            ATCC 51867]
 gi|227180965|gb|EEI61937.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum
            ATCC 51866]
          Length = 1188

 Score =  947 bits (2449), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/1072 (30%), Positives = 531/1072 (49%), Gaps = 51/1072 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S SFVHL  H+ YS+L+G   ++ + +++     PA+ +TD  N+F +  F +K  A
Sbjct: 1    MSNS-SFVHLHNHTEYSMLDGMAKVDLLAEEVKRQGMPAVGMTDHGNMFGSDAFYRKMTA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             GI+PIIG +  +                       +         ++     G + L  
Sbjct: 60   EGIKPIIGIETYMAPDSRFNKKRVLWGEPHQKRDDVSASGAYLHQTMIAENVTGLKNLFH 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +           A      +
Sbjct: 120  LSSMASYEGQLGKWPRMDAELISE-HAEGIIATTGCPSGDVQTRLRLGQFDEALAAAARW 178

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++  D  ++ L  H    +R    Q++++     LP + TN+  ++ +     H+ ++
Sbjct: 179  QDIYGKDNFFLELMDHGLDIERRVRDQLLEIGKRLNLPPLVTNDCHYVLQSQSHDHEAML 238

Query: 233  AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAP 290
             V     +   DR +   D +Y+K  ++M   + + +P A +NT+ IA R     ++  P
Sbjct: 239  CVQTGKTLQDPDRFKFGGDGYYIKTAAQMRDTWDNMVPGACDNTLWIAERVGDYSEIWEP 298

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +        +   + L ++ + GL+ R     +      Q+Y  R  +E+ VI  
Sbjct: 299  HTHDRMPIADVPEGETPTSWLTHEVMEGLKRRFPDSEV-----PQEYIDRAKYEIEVIDF 353

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A+   I VGPGRGS AGS+ AYA+TIT+IDP+   LLFERFLNP
Sbjct: 354  KGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGSLVAYAMTITNIDPMEHGLLFERFLNP 413

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468
            +R S PD DIDF   RR E+I Y   ++G +++AQ+ITFG+++ K AL+D  R    Q  
Sbjct: 414  ERPSAPDIDIDFDDRRRSEMITYAAERWGADKIAQVITFGTVKTKQALKDSARVQFGQPG 473

Query: 469  YSQVDRLCKLIPN-DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y   DR+ KL+P       ++L+ I D +          R+    DP V ++ E ++ LE
Sbjct: 474  YQIADRVTKLLPPAIMGKDITLKGIVDPNDKRYNEAGEVRQLIETDPDVRKIFETARGLE 533

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++   PL + +PM++  +    +T +     E  GL+K DFLGL+ L
Sbjct: 534  GVVRQAGVHACAVIMACVPLMEHIPMWKRAQDGAIITGWPYPACEAIGLLKMDFLGLRNL 593

Query: 580  TLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T+L  +L+ + + RG  V L  + +D  E Y LL    TLG+FQL+  GMR+ L  M+P 
Sbjct: 594  TVLNDALENIKENRGETVVLEDLTYDAPEVYDLLGRGDTLGVFQLDGGGMRELLRRMKPT 653

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQ 692
              +DI+A ++LYRPGP+     + Y +RKNGK+ I  IHP +    + +L +T G+I+YQ
Sbjct: 654  GFDDIVAALALYRPGPMGMNAHMDYADRKNGKKPIEPIHPELAEPLEEILHDTYGLIVYQ 713

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQ+M+I+Q ++ YS  EAD  R+AMGKK  E + KQ  +F  G   NG S+     ++  
Sbjct: 714  EQIMKISQKVANYSAGEADTFRKAMGKKKPEVLKKQYAKFSGGMKDNGYSQDAIDALWGT 773

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA Y FNKSHAA Y+V+SY TA+MKT Y  E++AA +T   DN +K   +  D R  
Sbjct: 774  IEPFASYAFNKSHAAGYSVVSYWTAYMKTFYTQEYMAALLTSVGDNKDKSAIYLADCRHL 833

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
             I+++PP VN    +F+   + + + L A++ VG      I++   +   F S  D+  +
Sbjct: 834  GIKVLPPDVNASLQNFQAVGDDVRFGLGAVRNVGADVVDSIVKTRKEKGDFTSFSDYLDK 893

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            +++   N+RV ESL+ AGA D  G+ R  L    ++        +K       ++FA   
Sbjct: 894  IETLPCNKRVTESLIKAGAFDSLGHPRKGLALIHEDAVDSVISTKKAADKGQFDLFAGLG 953

Query: 932  GTFSDKITLE-------KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            G  S                  +   +   E+ +LG Y SGHPLD Y+  L         
Sbjct: 954  GGDSAGGVEPSVFDVQVPDEEWDRKHKLALEREMLGLYVSGHPLDGYEAALAAQTDTELT 1013

Query: 985  ESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
              +      G  +++  ++ S  ++ +++ GS    VT  +      E   F
Sbjct: 1014 TILGGELKHGREVKIGGIISSVDRRVSKRDGSPWAIVTIEDHNGASVELLVF 1065


>gi|225021950|ref|ZP_03711142.1| hypothetical protein CORMATOL_01982 [Corynebacterium matruchotii ATCC
            33806]
 gi|224945236|gb|EEG26445.1| hypothetical protein CORMATOL_01982 [Corynebacterium matruchotii ATCC
            33806]
          Length = 1203

 Score =  947 bits (2449), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/1074 (30%), Positives = 526/1074 (48%), Gaps = 49/1074 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +   + K  SFVHL  H+ YS+L+G   ++ + ++       A+ +TD  N+F +  F +
Sbjct: 14   MMASMAKKSSFVHLHNHTEYSMLDGMAKIDMLAEEATRLGMSAVGMTDHGNMFGSDSFYR 73

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQ----------GKTPFPTVPSIVLLVSTAEGYQ 110
                AGI+PIIG +  +       M  Q            +         ++  TAEG  
Sbjct: 74   AMTKAGIKPIIGIEAYLAPGSRFDMKRQRWGDESQKSDDVSASGAYLHQTMIAETAEGLH 133

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L  L S      Q  +  R+    + E    G+I  TG  SG I           A + 
Sbjct: 134  NLFYLSSMASYEGQLGKWPRMDAELIAE-HATGIIGTTGCPSGDIQTRLRLGQFDKALET 192

Query: 171  LLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
               ++ ++  D  ++ L  H    +    S+++++    +LP + TN+  ++ E    AH
Sbjct: 193  AAMWQDIYGRDNFFLELMDHGLNIENRVRSELLEIGRRLDLPPLVTNDCHYVLESQAHAH 252

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYL-KNRSEMVSIFSDL-PEALENTVEIARRCSFILQ 286
            +V++ V     +S  DR +     Y  K+  +M  ++ DL P+A +NT+ IA R      
Sbjct: 253  EVMLCVQTGKTMSDPDRFKFDGTGYFVKSAEQMRELWDDLVPDACDNTLWIAERVQDYSS 312

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
            +        +              LR++ + GL  R             +Y +R ++E+ 
Sbjct: 313  IWEAHPYDRMPIADVPEGHTPTTWLRHQVLDGLRDRF-----DGAEVPANYIERAEYEIG 367

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI    +  YFLIVA+ I+ A+   I VGPGRGS AGS+ AYALTIT+IDP+   LLFER
Sbjct: 368  VIDMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGSLVAYALTITNIDPIHHGLLFER 427

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA-- 464
            FLNP+R S PD DIDF   RR E+IRY   ++G +++AQ+ITFG+++ K A++D  RA  
Sbjct: 428  FLNPERPSAPDIDIDFDDRRRGEMIRYASERWGEDKIAQVITFGTVKTKQAIKDSARALY 487

Query: 465  LQMPYSQVDRLCK-LIPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEIS 515
             Q  Y   DR+ K L P   A  +SL  I D            R+    DP V ++ + +
Sbjct: 488  GQPGYQIADRITKVLPPPIMAKDISLAGIMDPEHDRYTEAGEVRQLIETDPDVRQIYDTA 547

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + LEG+ R A  HA  +++   PL   +PM++       +T +     E  GL+K DFLG
Sbjct: 548  RGLEGVVRQAGVHACAVIMASVPLLDCIPMWKRAADGALITGWPYPACEAIGLLKMDFLG 607

Query: 576  LKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L+ LT++  +L+ +   R   +DL  +   D   Y LL    TLG+FQL+S GM++ L  
Sbjct: 608  LRNLTVIGDALENIKINRDETIDLENLAITDPNVYKLLARGDTLGVFQLDSGGMQELLRR 667

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGV 688
            MQP    DI+A ++LYRPGP+  +  + Y +RKNG++ I  IHP ++     +L ET G+
Sbjct: 668  MQPTEFNDIVAALALYRPGPMGVNAHLDYADRKNGRKPITPIHPELEEALKDILDETYGL 727

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQ+M+I++ ++ Y+  EAD  R+AMGKK  E +  + E+F +G   NG SK     
Sbjct: 728  IVYQEQIMEISRRVANYTAGEADGFRKAMGKKKPEVLAAEYEKFSAGMFSNGYSKDAVDA 787

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++  +  FA Y FNKSHAA Y ++SY TA++K +Y  E++AA +T   D  +K   +  +
Sbjct: 788  LWGTIEPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVSDKKDKSAIYLAN 847

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLED 867
             R   I ++ P VN    +F      I + L A++ VG      I+    A   +    D
Sbjct: 848  CRHLGIAVLSPDVNESAYNFLPVGQDIRFGLGAVRNVGEDVVASIVRERKAKGLYKDFTD 907

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            +  ++D    N+RV ESL+ AGA D  GYSR  L+   ++    A   +K       ++F
Sbjct: 908  YLEKIDLTACNKRVTESLIKAGAFDSMGYSRKGLMMVFEDAVDAAIGPKKAMDKGQFDLF 967

Query: 928  AHEKGTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
            +   G          I++      +   +   E+ +LG Y SGHPLD ++  L       
Sbjct: 968  SALGGESEVTENVFSISVPD-DTWDRKHQLALERDMLGLYVSGHPLDGFEEALDAQVDTS 1026

Query: 983  YE--ESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
                 S     G  +++  ++ +  ++ ++K GS    VT  +    + E   F
Sbjct: 1027 LSVVASEELKNGAEVQIGGIISAVDRRVSKKDGSPWAIVTIEDQHGVQVEMLVF 1080


>gi|261879187|ref|ZP_06005614.1| DNA-directed DNA polymerase III alpha subunit [Prevotella bergensis
            DSM 17361]
 gi|270334182|gb|EFA44968.1| DNA-directed DNA polymerase III alpha subunit [Prevotella bergensis
            DSM 17361]
          Length = 1239

 Score =  947 bits (2448), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1120 (31%), Positives = 552/1120 (49%), Gaps = 107/1120 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------ 63
             FVHL VH+ YS+L+G   +  ++DK  +D    +AITD   ++   E            
Sbjct: 3    DFVHLHVHTHYSVLDGQSKVRKLVDKAISDGMKGMAITDHGVMYGIKELFDYCATINKKR 62

Query: 64   -AAGI---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
             + G+   +PI+GC++ +   +      +      +   +++L    +GY+ LI+LVSR 
Sbjct: 63   ASEGLDPFKPILGCEMYVAHHNKEDKVREDG--DASGYHLIVLAKNYKGYKNLIKLVSRA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++        R   + L++   EGLI+ +   +G +         + A +    + +LFG
Sbjct: 121  WVHG-YYYKPRTDRTDLEKYH-EGLIICSACIAGEVPSKILKGDIEGAREACEWYHRLFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     +++ A  + + +V TN+  F  ++  E
Sbjct: 179  DDFYLELQRHEVKDPSIRANREVFPLQQKANQVMMEFAKEYGIKVVCTNDCHFEDQDTAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++ S  +    R   T   + K+R EM  IFSD+PEAL NTVEI  +      
Sbjct: 239  AHDHLLCLSTSKDLDDPFRLMYTKQEWFKSREEMNEIFSDIPEALRNTVEILDKVELYSI 298

Query: 287  VHAPILPRFIEKECDDIQKE---------------------------------------- 306
              +PI+P F   +    ++E                                        
Sbjct: 299  NSSPIMPYFPIPKEFGTEEELRKKYTEEDLFREFTTDENGQNPLPEEEAHKVIDRLGGYD 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L   A  G +               + R+ ++FEL+V+  M F GYFLI
Sbjct: 359  KIYRIKLEADYLGKLAFDGAKKNYGDPV------PDNVREHINFELHVMKTMGFPGYFLI 412

Query: 360  VADFIQWAK-KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A+ +  + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD 
Sbjct: 413  VQDFIAAARNELGVWVGPGRGSAAGSVVAYCLGITRIDPLKYDLLFERFLNPDRVNLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R +V+R+V +KYG E  A IIT+ S+  K ++ DV R  ++P  + + L K 
Sbjct: 473  DTDFDDDGRGKVLRWVMDKYGEENCAHIITYSSMATKNSIADVARVERLPLERANMLKKA 532

Query: 479  IPN---DPAHPVSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP+   D        AI      REA  + DP     ++ +++LEG  R    HA G +I
Sbjct: 533  IPDRLPDGKKMNLRNAIEYTPELREAEASTDPRERNTIKYAKQLEGTVRGTGIHACGFII 592

Query: 535  GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+ + VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   +
Sbjct: 593  CRDPIDEWVPVSTADDPDFPELKCAVTQYDGHVIEDTGLIKMDFLGLKTLSELKEACKVV 652

Query: 590  AQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             + RGVKVD+  IP DD  TY L     T+G FQ ES GM++ L  + P   ED+IA+ +
Sbjct: 653  ERTRGVKVDIDKIPIDDELTYKLYQQGRTIGTFQFESPGMQKYLRELHPTVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPDFIKRKNDPSLVTYDIPCMEQYLKDTYGITVYQEQVMLLSRQLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E+D LR+AMGKK K  +D+ K +F+     NG  K +   I+    KFA Y FNKSHA  
Sbjct: 773  ESDALRKAMGKKKKAIVDQMKPKFLKQGMANGHDKNVLEKIWNDWEKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ ++YQTA++K HYP E++AA MT    ++ +I K  ++ +  +I  + P VN   V+F
Sbjct: 833  YSWVAYQTAYLKAHYPAEYMAALMTRRFADIGEITKLMEECKAMDIPTLGPDVNESYVEF 892

Query: 829  KVGDN-RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V     I + L+AIKG+G+  A  I+ E   + P+  + DF  RV  + +NR+ +ESL 
Sbjct: 893  GVNKKGEIRFGLSAIKGMGSGAADAIVKERQKNGPYKDIYDFVGRVSLRDINRKAMESLA 952

Query: 887  FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKI 938
             +G  DCFG  R Q +Q        LD++ ++ Q  ++++     ++F       +    
Sbjct: 953  LSGGFDCFGLMREQYMQVNAKGDVFLDSLVRFGQQYQQDKMESANSLFGGMVSEIAIATP 1012

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------G 992
               K    ++  +   E+ ++G Y S HPLD Y  +L  +      E+            
Sbjct: 1013 PAPKAEEWSAIEKLGKEKELVGIYLSAHPLDDYILVLDNLCNTSCTEAGNRENYAELSMR 1072

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +    +V    Q+  ++G   G VT  +     E   F
Sbjct: 1073 QEVTFGGIVTKVTQRFNKRGEPFGIVTIEDFGGPGEIALF 1112


>gi|225619527|ref|YP_002720784.1| DNA polymerase III subunit alpha [Brachyspira hyodysenteriae WA1]
 gi|225214346|gb|ACN83080.1| DNA polymerase III, alpha subunit [Brachyspira hyodysenteriae WA1]
          Length = 1236

 Score =  947 bits (2448), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1036 (35%), Positives = 575/1036 (55%), Gaps = 36/1036 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNI--------------LDKIAADQQPAIAITDTNNLFSA 55
            SFVHL VH+ YS+L+GA  + ++              +D+      P IA+TD  N+F A
Sbjct: 2    SFVHLHVHTQYSILDGAARIKSLYSKKDKTKRLIPGLIDRAKELGMPGIAMTDHGNMFGA 61

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +EF  +A   GI PIIGC++ +  +       +      +   ++LL    EGY  L +L
Sbjct: 62   MEFFSEAKDKGIIPIIGCEVYVAPKTRFDKKIENSEEK-SAMHLILLAKDKEGYNNLCKL 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            V+  Y         R+    +++   +GLI L+    G I  A      + A K    +K
Sbjct: 121  VTFGYTEG-FYYRPRVDHELIEKY-NKGLICLSACMGGEIPIAIRKKDYKQASKLAEYYK 178

Query: 176  KLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
             +FG+  Y+ LQ H   +     S + QLA  H + LV TN+  ++S+ED +AH++L+A+
Sbjct: 179  SIFGNDFYIELQDHNIPEEKALNSALYQLAKHHNIELVVTNDVHYVSKEDAKAHEILLAI 238

Query: 235  AHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI-LQVHAPIL 292
                 +    R +  + + +LK   EM+  F+ LP+A ENTV+IA +C  + +      +
Sbjct: 239  QTKATLDSPRRYKFPSNEFHLKTEEEMMKSFAKLPKAFENTVKIAEQCQDLNIMTKTYYM 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P +     +     E   LRN  + GL               ++   RL+ EL VI +M 
Sbjct: 299  PNYELPNGE----TETTALRNMCMDGLNKYYNNNI------PKEAMDRLEMELGVIGKMG 348

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFL+V DFI +A+ +++ VGPGRGS AGS+ A+A  IT ++PL ++LLFERFLNP+R
Sbjct: 349  FEGYFLVVQDFINYARNHDVAVGPGRGSAAGSIVAFATGITKVNPLDYNLLFERFLNPER 408

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
             SMPD D+DF  D+R+ +I YV+ KYG + V+QI TFG+L  ++ +RDV R + +  +  
Sbjct: 409  KSMPDIDVDFQDDKREVIIDYVKEKYGKDNVSQIATFGALGGRSVIRDVCRVMGIDLATA 468

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            DRL K IP+D    V +    D +   +    +  +  + EIS +L+GL R+   HAAG+
Sbjct: 469  DRLAKSIPDDVKRVVDIYDHPDCAALVKEIEGNRELKNMYEISTRLDGLVRNVGLHAAGV 528

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            +I   P+  L P+Y+D ++     Q+ M ++E AGLIK DFLG+K L L++ ++  +  R
Sbjct: 529  IISSHPIMDLAPVYQDSKTGTRACQYEMTYVESAGLIKMDFLGIKNLRLIKDAIKDIKDR 588

Query: 593  G-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
              +++D+  IP DD   Y +     T G+FQ ES GMRQ L  +QP   +D+++ V+LYR
Sbjct: 589  YGIEIDIDKIPLDDEAVYDIFRKADTGGVFQFESPGMRQMLINIQPTGFDDLVSSVALYR 648

Query: 652  PGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+++ +   Y +RKN +++IV  HP ++P+LKE+QGV+IYQEQ+M I++++ G++ +E
Sbjct: 649  PGPLNSGMDKDYADRKNKRKEIVYKHPDLEPILKESQGVLIYQEQIMAISRVIGGFTAAE 708

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD LR+AMGKKI E+M+  +E+FI G  + G  K +   +F+ +  FA+YGFNKSH+  Y
Sbjct: 709  ADDLRKAMGKKIVEKMNSMEEKFIKGGLERGYDKELLTYLFDTMKGFAEYGFNKSHSVCY 768

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+I+YQ A++K HYP+E+  A +   + + +KI  +  + +Q NI+I+  SV      F 
Sbjct: 769  ALIAYQEAYIKAHYPMEYYVALLNTVIADTDKISLYLNEIKQKNIEIVTASVFESDALFS 828

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              D +I Y+L A+KGVG   A  I E    +  F +LEDF  RVD   +NR+V E+L+  
Sbjct: 829  QKDGKIVYALHAVKGVGIHAALAIQEEREKNGQFKNLEDFVKRVDVHLVNRKVYETLIKC 888

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVE 946
            GA   FG++   LL SLD I  +A   +K   +    +F    E  + S  + +EK    
Sbjct: 889  GAFSEFGHTESALLSSLDAILAHASNYQKETLSGQTMLFDSMSEDDSGSASLVIEKQVEY 948

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
             S++  ENE+ VLGF    HP   Y   +         +       +   L  +V+S  +
Sbjct: 949  ASNILMENEKEVLGFSLRYHPFARYITKIDYKYFHNTLDIDNLKDKDEFLLPCVVMSASE 1008

Query: 1007 KKTRKGSRIGWVTFSE 1022
              T+K + +  +   +
Sbjct: 1009 TTTKKNTPMITLKVID 1024


>gi|126641511|ref|YP_001084495.1| DNA polymerase III alpha chain [Acinetobacter baumannii ATCC 17978]
          Length = 1155

 Score =  947 bits (2448), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1009 (37%), Positives = 564/1009 (55%), Gaps = 47/1009 (4%)

Query: 41   QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
             PA+A+TD +NL +A++F       GI+PI+G  +                         
Sbjct: 1    MPALALTDLSNLHAAVKFYNSCLKKGIKPILGSTI---------------RLNDAQHRAT 45

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            LL  +  G++ L E+VSR ++  Q      +   W+ E   + +I+L G  S  + +   
Sbjct: 46   LLAMSDIGWKGLTEIVSRGFIEGQQLSIPCVQKEWVLEQH-QDIIVLLGQHS-DVGQMLC 103

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLF 219
             ++ Q AE  L  + + FG+R+Y+ L R  R  +     +  +LA  + + +VA N+  F
Sbjct: 104  SSNPQKAEPLLEEWIEKFGNRVYLALTRTDRPGEEDFIQEAAKLAAKYNIGVVAHNDVHF 163

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            + +ED+EAH+  + +A   V++   RPR  +P+ Y K   EM+ +FSD+P A+ENT +IA
Sbjct: 164  IEKEDFEAHEARVCIADGYVLADDRRPRLYSPEQYFKTSDEMIELFSDIPSAIENTYQIA 223

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL------AQGAIAKGY 332
            +RC+  L++    LP +   +   I    +    + +  GLE RL       +       
Sbjct: 224  KRCNVTLKLGTYFLPEYPIPDGFTI----DTYFEHLSKEGLEERLNYLYPVEKRGEDWPE 279

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              + Y +R+D+E+ +I +M F GYFLIV DFIQWAK N +PVGPGRGSGAGS+ AY+L I
Sbjct: 280  IRKPYDERIDYEVGIILKMGFPGYFLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKI 339

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            TD+DPLR+ LLFERFLNP+R+SMPDFD+DFC   RD VI YV   YG E V+QI TFG++
Sbjct: 340  TDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTM 399

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA-----DPS 507
             AK A+RDV R L   Y   DR+ K++P  P       AI  + + ++         +  
Sbjct: 400  AAKGAIRDVARVLGKSYGLADRISKMVPTKPLGVDLATAIEMEPQLKDIVTNPSNPDNDD 459

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
               + E++ KLEG+ R+   HA G+VI    ++    +  D      V Q++   +E AG
Sbjct: 460  ASEIWEMALKLEGITRNTGKHAGGVVIAPGKITDFSAVLCDADGTNRVAQYDKDDVEAAG 519

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLE 624
            L+KFDFLGL+ LT+++ ++  + +     D   +S +P DD + Y +     T  +FQ E
Sbjct: 520  LVKFDFLGLRNLTVIEDAIQNINKNRDSNDPLNISHVPLDDPKAYSVFADANTTAVFQFE 579

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S GM++ L+  +P   E+IIA VSLYRPGP+D I  + +R +G E    +HPL++ +L+ 
Sbjct: 580  SVGMKRMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHRMHGGE-FEYLHPLLEGVLEP 638

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+++YQEQVMQ AQ+ +GY+L  AD+LRRAMGKK  EEM KQ++ F+ GA + GI ++
Sbjct: 639  TYGIMVYQEQVMQTAQICAGYTLGGADLLRRAMGKKKPEEMVKQRQIFLEGAGQKGIDES 698

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
             A +IF+ + KFA YGFNKSHAAAYA+++Y TAW+K HYP EF+AA M+ EM N + +  
Sbjct: 699  TANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPAEFMAAVMSSEMQNTDSVVF 758

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIME-ASADKPF 862
               D R   ++++PPSVN     F   D++   Y L AIKGVG    + +++      P+
Sbjct: 759  LIDDCRNNGLEVLPPSVNMSTYHFHASDDKTIVYGLGAIKGVGEQAMQSVIDSRRQQGPY 818

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
              L DFC R+D KK+N+R LE+L+ AGALDC G  R  L+  L    + A+    NR + 
Sbjct: 819  TDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIERSSLMAQLPEAVQAAEQARSNRESG 878

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
              ++F   +     +   +     +  VR + E+  LG Y +GHP+DVY+  L+      
Sbjct: 879  IMDLFGEVEEV--QRKPAKPVKPWSDEVRLKGEKDTLGLYLTGHPIDVYRQELKAFIPAK 936

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
              E  AT RG     A +V+          +R+  V   +     E + 
Sbjct: 937  LNEITATRRGVTTVYAGLVLDVANFP----NRVVIV-LDDGTARIEVSC 980


>gi|119899497|ref|YP_934710.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
 gi|119671910|emb|CAL95824.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
          Length = 1172

 Score =  946 bits (2446), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/1049 (38%), Positives = 606/1049 (57%), Gaps = 43/1049 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL++H+ YS+ +G + ++  + + AAD  PA+ I+D  NLF  ++F + A   G
Sbjct: 9    HEPRFIHLRLHTEYSITDGIVQIDQAIAQAAADGMPAMGISDLANLFGMVKFYKGARGKG 68

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG    I          Q +        ++L+  + +GY +L EL+++ YL ++ +
Sbjct: 69   VKPIIGVDAWI----------QNEAERDKPYRVLLICKSRKGYGQLCELLTQAYLENKYR 118

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +   W +    + L+ L+G   G + +A    +  +AE+    + +LF    Y+ +
Sbjct: 119  GRAEMRREWFENGAADELLCLSGAFFGDVGQAIVNGNIDLAERLAADWSRLFPGAFYIEI 178

Query: 187  QR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            QR  H G + Y    + Q+A   +LP+VAT+   FL+ +D++AH+  + +A   V++ K 
Sbjct: 179  QRAGHPGTETYIRHAL-QIANKLDLPVVATHPVQFLTPDDFQAHEARVCIAQGYVLADKR 237

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RPR  T   YLK++ EM ++F+D+P+ALEN VEIA+RCS  +Q+    LP F   +   +
Sbjct: 238  RPRDFTEQQYLKSQDEMCALFADIPDALENAVEIAKRCSVTVQLGKNFLPLFPTPDGMTL 297

Query: 304  QKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                ++ L  +A  GLE RL         +      Y +RL FE + I +M F GYFLIV
Sbjct: 298  ----DDFLVQEAKKGLEERLVQLYPHPEEREKQRPRYEERLKFETDTIIQMGFPGYFLIV 353

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFIQW K N +PVGPGRGSGAGS+ AY+L ITD+DPL ++LLFERFLNP+R+SMPDFDI
Sbjct: 354  ADFIQWGKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLEYALLFERFLNPERVSMPDFDI 413

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQD R  VI YV+ +YG + V+QI TFG+L +KA +RDVGR L MPY   DRL KL+P
Sbjct: 414  DFCQDNRYRVIEYVRERYGKDAVSQIATFGTLASKAVVRDVGRVLDMPYGLCDRLSKLVP 473

Query: 481  NDPAHPVSL-QAIADDSRFREA---RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
             + A PVSL +A   + +  E         +V  L +++Q LEGL R    HA G++I  
Sbjct: 474  IEGAKPVSLARAYEMEPQIGEMMKDGNDGEAVQTLWDLAQPLEGLTRGVGMHAGGVLIAP 533

Query: 537  RPLSQLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
              L+   P+Y     D  PV+QF+   +E  GL+KFDFLGL+ LT+++ +LD++ +  G 
Sbjct: 534  GKLTDFCPLYIADGDDATPVSQFDKDDVEAVGLVKFDFLGLRNLTIIELALDYVERLTGE 593

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VDL  + F D   Y +L    T  IFQ+ES GM++ L+ + PD  EDIIA+++LYRPGP
Sbjct: 594  RVDLMSLGFQDPAAYQILKDANTTAIFQVESDGMKKLLKKLAPDRFEDIIAVLALYRPGP 653

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            + + +V  +  RK G+++I   HP +   L+ T GVI+YQEQVMQI+Q++ GY+L  AD+
Sbjct: 654  LGSGMVDDFILRKKGQQEIDYFHPDLKACLEPTYGVIVYQEQVMQISQIIGGYTLGGADM 713

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  EEM K +     GA + G    +A  +F+L+ KFA+YGFNKSH AAYAV+
Sbjct: 714  LRRAMGKKKPEEMAKHRATIADGAKQKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAVV 773

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVG 831
            +Y TAW+K H+   F+AA+M+ ++DN + +K F +D     I I+PP VN     F  V 
Sbjct: 774  TYHTAWLKAHHCAAFMAATMSSDLDNTDTVKIFFEDTLANKIAILPPDVNESDYRFVPVD 833

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS----ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               I Y L A+KGVG    R I+ A     A KP+  L DFC RVD + +NRRV+E+L+ 
Sbjct: 834  RKTIRYGLGAVKGVGEPAVRAIIAARASGGAVKPYRDLFDFCERVDRRLVNRRVVEALIR 893

Query: 888  AGALDCF----GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            AGA+D      G  R Q+L ++    + A+    N       +F          +     
Sbjct: 894  AGAMDTLEGHRGRDRAQVLATVPLAMEAAEQAAANALQG--GLFDLVPEAAGAALEFADV 951

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                   R + E+  +GF+ SGHP + +KP +R+   +   +   +     + +A +V+ 
Sbjct: 952  RPWTERERLKEEKTAIGFFLSGHPFNAFKPEVRRFVRRTLAQLEPSRD--LVMMAGVVME 1009

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + K   +G  + +V   +     E   +
Sbjct: 1010 ARVKMGNRGKMM-FVQIDDGTTPREVAVY 1037


>gi|89898738|ref|YP_515848.1| DNA polymerase III subunit alpha [Chlamydophila felis Fe/C-56]
 gi|89332110|dbj|BAE81703.1| DNA polymerase III alpha subunit [Chlamydophila felis Fe/C-56]
          Length = 1241

 Score =  946 bits (2446), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1076 (33%), Positives = 567/1076 (52%), Gaps = 59/1076 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ L  HS YS+L+   S+ + + K    Q P++A+TD  NL+ A+EF ++     I+P
Sbjct: 2    TWIPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECYQQDIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +          + K+       ++LL    +GY+ L  L S  +         
Sbjct: 62   IIGCEVYVAPSSRFDKKKEKKSRVAN--HLILLCKNEQGYRNLCLLSSLAFTEG-FYYFP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +  +EGL+ L+   SG + +A    S +  EK L  ++ LFG+  Y  +Q H
Sbjct: 119  RIDRELLSQY-SEGLVCLSACLSGSVAQAALE-SEEALEKDLRWYQSLFGEDFYSEVQLH 176

Query: 190  RGYDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +  +                            V++ +    +  VATN+  ++  ED+ A
Sbjct: 177  KMSEEKIASLGEEWLKHEYHQFIETQTKVNQAVLETSKRLGIRSVATNDIHYIHPEDWLA 236

Query: 228  HDVLMAVAHSTV----------VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+ V                + K +   + ++Y K+  EM ++F+D PE + NT+E+
Sbjct: 237  HEILLNVQLGETIRIAKQNTYIPNPKRKAFRSREYYFKSPKEMANLFADHPETISNTLEV 296

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQGAI- 328
            A +C+  L       P ++ +   + Q   E E        LR     GL          
Sbjct: 297  ADKCNLKLDFSVKHYPIYVPEFLKEKQTYTEEERYTASSAFLRELCEKGLLKYTPDKLAH 356

Query: 329  -----AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                       +  ++R++ E+++I       Y LIV D I WAK + IPVGPGRGSGAG
Sbjct: 357  ISKKFPNRDPLELVKERMEMEMSIIIPKGMCDYLLIVWDIIHWAKAHGIPVGPGRGSGAG 416

Query: 384  SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            SV  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G   V
Sbjct: 417  SVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKNNV 476

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
            AQIITFG+++AK A++DVGR L +  S+V+ + K IP   A     +A+  D    +   
Sbjct: 477  AQIITFGTMKAKMAVKDVGRTLDVSLSKVNLIAKHIPELNA--TLSKALETDPHLNQLYA 534

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563
             D    ++++++ +LEG  R+   HAAG++I    L+  +P+     S +  TQF+MK +
Sbjct: 535  DDAEAAQVIDMAMQLEGSIRNTGVHAAGVIICGDHLTNHIPICISKDSTMITTQFSMKPV 594

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            E  G++K DFLGLKTLT +  ++  +  + G  ++++ +P DD  T+ LL    T+GIFQ
Sbjct: 595  ESVGMLKVDFLGLKTLTSIHIAIQAIQKKTGKLLEMATLPLDDKTTFSLLHQGKTMGIFQ 654

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
            +ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPLI+ +L
Sbjct: 655  MESKGMQELAKNLRPDSFEEIIAIGALYRPGPMDMIPSFINRKHGKEVITYDHPLIESIL 714

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            KET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK   +M +++ +F   A KNGI 
Sbjct: 715  KETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDINQMLQERTKFCERACKNGID 774

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              +A  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+
Sbjct: 775  ADLATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDSDDIEKV 834

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861
             K   +A   NI ++PP +N    +F   D  I +++ AIKG+G      I+E      P
Sbjct: 835  GKLIHEAHSMNICVLPPDINESGTNFVATDKGIRFAMGAIKGIGKGLVESIIEEREKHGP 894

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + +++DF  R D KK+ ++  E+L+ AG  D F   R      L++I +     +K    
Sbjct: 895  YQNIQDFLKRSDLKKVTKKHTENLIDAGCFDVFEPDRDVAQAVLESIYESISKEKKEAAT 954

Query: 922  KHENIFAHEKGTFSDKITLEKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                 F+         I L   +           + E+ +LG Y + HP+D  K IL ++
Sbjct: 955  GVMTFFSLNTMLKEQPIVLTPTTHIVRRQKKEILKKEKELLGIYLTEHPMDAVKDILPRL 1014

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033
             +    E  +   G  IR   ++     + + KG R    +  ++    YE   +P
Sbjct: 1015 SVVSPGEFESLPHGAVIRTIFIIDKVTTRISSKGQRKFALLRVNDGVDSYELPIWP 1070


>gi|262277280|ref|ZP_06055073.1| DNA polymerase III subunit alpha [alpha proteobacterium HIMB114]
 gi|262224383|gb|EEY74842.1| DNA polymerase III subunit alpha [alpha proteobacterium HIMB114]
          Length = 1139

 Score =  946 bits (2446), Expect = 0.0,   Method: Composition-based stats.
 Identities = 444/1034 (42%), Positives = 661/1034 (63%), Gaps = 29/1034 (2%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            ++L++HS +S+ EGA+ ++ +++        A+ + D+ NL  ALEFS +    GIQP+I
Sbjct: 6    INLKIHSQFSICEGAIKIDKLVNYCKEHSVTAVGLCDSENLSGALEFSSQLKKEGIQPLI 65

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-SVR 130
            G ++ I    + K+T           +  L      GY+ L++L S+ YL  Q       
Sbjct: 66   GTKIYIKENVDGKIT---------YGTASLYAKNQIGYKNLLKLSSKSYLDLQEHDDKPN 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L+ L++   EG+I+L GGS          N  +     +   K +F D +Y+ +QRH 
Sbjct: 117  INLNILKKYH-EGIIILIGGSFSFFSDLLVKNKDEYCFNEVKKLKDIFNDNIYIEIQRHN 175

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              +++  E ++++L+    +PL+ATN   +L ++ Y AHD  + V     V++K+R + +
Sbjct: 176  ESHEKQLEKKLIKLSSDTSIPLIATNEVFYLEQDSYNAHDAFICVGEKNYVNEKNRLKYS 235

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              HY K  SE  ++F+DLP+ALEN      + ++  +   P+LP F E       K+   
Sbjct: 236  NQHYFKKTSEFENLFADLPDALENNKNFKYKFNYFPKKSNPLLPSFSEN-----GKDTNQ 290

Query: 310  ELRNKAVAGLEVRLAQGAIA-------KGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             L++KA  GLE RL +           K    ++Y  RL++E+NVI++MKFSGYFLIV+D
Sbjct: 291  ILKDKAEKGLEERLEKYVYPRLGATTDKDEIKKNYFDRLNYEVNVISKMKFSGYFLIVSD 350

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I WAK NNIPVGPGRGSGAGS+ A+ L+ITD+DP+RF L+FERFLNPDR+SMPDFDIDF
Sbjct: 351  YINWAKSNNIPVGPGRGSGAGSLVAWCLSITDLDPIRFGLIFERFLNPDRISMPDFDIDF 410

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ+ RDEVI YV++KY   +VAQIITFG LQA+ ALRD+GR L +PY +VD+LCK+IP D
Sbjct: 411  CQEGRDEVINYVKDKYP-NKVAQIITFGKLQARMALRDIGRVLGLPYGRVDQLCKMIPFD 469

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P+ P+SL ++IA + R +EA   DP + +L+  + KLEGLYR+ +THAAG+VIGDR L +
Sbjct: 470  PSRPLSLAESIAIEPRLQEAEKNDPIIKKLINYALKLEGLYRNVATHAAGVVIGDRNLDE 529

Query: 542  LVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +VP+Y+D+ S   +PVTQF+MK  E+AGL+KFDFLGLKTLT+++K+++F+ +     D+S
Sbjct: 530  IVPLYKDLSSTLPIPVTQFDMKSSEEAGLVKFDFLGLKTLTVIKKTIEFIQKDKADFDIS 589

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I   D +T+ LL++  T+GIFQLESSGMR+ L+ ++P+  EDIIALV+LYRPGP+ NI 
Sbjct: 590  KINLSDQKTFELLSSGETMGIFQLESSGMREVLKQLKPNKFEDIIALVALYRPGPMQNIP 649

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y +RK+ KE++  IHP ++ +LKET GVIIYQEQVMQIAQ LS +S S+AD+LR+AMGK
Sbjct: 650  TYISRKHEKEEVDYIHPKLENILKETYGVIIYQEQVMQIAQALSSFSASKADILRKAMGK 709

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K   EM++QK+ FI GA KNGIS+   + IF+L+ KFA YGFNKSHAAAYA+I++QTA++
Sbjct: 710  KKSVEMERQKKDFIDGAVKNGISRDQVIYIFQLVEKFAQYGFNKSHAAAYALIAFQTAYL 769

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            KTHYP+ F  ASM  E+ N +K+  F ++ ++  I I PP++N    +F   D  IYY+L
Sbjct: 770  KTHYPIYFFCASMNTELSNTDKLNLFYEELKRLKIDIRPPNINFSYAEFLPRDKTIYYAL 829

Query: 840  AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            +A+K VG  T   I+ E   +  F+S+ +F SRV+SK LN+  LE L+ +G+LD    +R
Sbjct: 830  SAVKAVGYDTISKIVYEREKNGKFNSISEFLSRVESKNLNKLQLEGLIKSGSLDILDNNR 889

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             +L +++    K ++  +K   N+ + +F++E       I        + + + + E   
Sbjct: 890  KKLFENVPEYIKQSKSSDKVNDNEQDQLFSNEMENDQTNIQEFNILDWDKNEKIKKEFES 949

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +GF+   HPL     +L+K  +  ++E        +  +A  ++S Q+KKT KG+    +
Sbjct: 950  IGFFVGEHPLKSNLQVLKKYNVSSHQELKNNNALKDAMIAGTLISIQEKKTAKGNPYAII 1009

Query: 1019 TFSEPAKEYEANFF 1032
               +    YE   F
Sbjct: 1010 KLVDLGSMYELFIF 1023


>gi|116667785|pdb|2HQA|A Chain A, Crystal Structure Of The Catalytic Alpha Subunit Of E.
           Coli Replicative Dna Polymerase Iii
          Length = 917

 Score =  946 bits (2445), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/933 (42%), Positives = 552/933 (59%), Gaps = 36/933 (3%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             P FVHL+VHS YS ++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2   SEPRFVHLRVHSDYSXIDGLAKTAPLVKKAAALGXPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62  IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112 AGPIIDRDWLIEL-NEGLILLSGGRXGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246 P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
           P   +P  Y ++  E   +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231 PRNYSPQQYXRSEEEXCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDX---- 286

Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +  F GYFLIV 
Sbjct: 287 -STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQXGFPGYFLIVX 345

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+S PDFD+D
Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSXPDFDVD 405

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC ++RD+VI +V + YG + V+QIITFG+  AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406 FCXEKRDQVIEHVADXYGRDAVSQIITFGTXAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
           DP   +  +A   + +  E   AD  V  L++ ++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466 DPGXTL-AKAFEAEPQLPEIYEADEEVKALIDXARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
             P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +
Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEXINKRRAKNGEPPL 584

Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
           D++ IP DD +++  L    T  +FQLES G +  ++ +QPDC ED IALV+L+RPGP+ 
Sbjct: 585 DIAAIPLDDKKSFDXLQRSETTAVFQLESRGXKDLIKRLQPDCFEDXIALVALFRPGPLQ 644

Query: 657 NI--VVYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
           +     + +RK+G+E+I        H  + P+L+ T G+I+YQEQV QIAQ+LSGY+L  
Sbjct: 645 SGXVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVXQIAQVLSGYTLGG 704

Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
           AD LRRA GKK  EE  KQ+  F  GA KNGI+  +A  IF+L+ KFA YGFNKSH+AAY
Sbjct: 705 ADXLRRAXGKKKPEEXAKQRSVFAEGAEKNGINAELAXKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
           A++SYQT W+K HYP EF AA  T + DN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765 ALVSYQTLWLKAHYPAEFXAAVXTADXDNTEKVVGLVDECWRXGLKILPPDINSGLYHFH 824

Query: 830 VGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           V D+    Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIX 884

Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
           +GA D  G  R  L  SL +  K A    K   
Sbjct: 885 SGAFDRLGPHRAALXNSLGDALKAADQHAKAEA 917


>gi|229814931|ref|ZP_04445269.1| hypothetical protein COLINT_01974 [Collinsella intestinalis DSM
            13280]
 gi|229809418|gb|EEP45182.1| hypothetical protein COLINT_01974 [Collinsella intestinalis DSM
            13280]
          Length = 1272

 Score =  945 bits (2443), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/1142 (30%), Positives = 545/1142 (47%), Gaps = 120/1142 (10%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            Q++    +FVHL  H+ YS+L+GA  + +++ +      PA+AITD   ++   E     
Sbjct: 4    QHM----AFVHLHNHTVYSMLDGATRIKDMVSRAVELGMPAVAITDHGYMYGVPELGLAC 59

Query: 63   CAA-----------------------------------GIQPIIGCQLDIDMQDNLKMTN 87
             A                                    G +  +      D + N+    
Sbjct: 60   DAVNHGTPEYKVWSHDKSFLEKGRRDELECPDQESDPRGYEQHMKDLAMWDEKGNIDELK 119

Query: 88   Q--------------------GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
                                  +   P +  +VL     +GY  L++ VS   +      
Sbjct: 120  PPLVIKPIFGCEVYFTPDETLARDRKPELYHMVLFAQNEKGYVNLMQTVSEAAVQG-FYY 178

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
              R+ L  L+    EGLI  +   +G I +         A +   TF+  F     Y+ +
Sbjct: 179  KPRVTLDNLRR-HREGLIASSACIAGIIPKCIDRGEMATAIEWAETFRDTFEPGNFYIEI 237

Query: 187  QRH------RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            Q H         D      ++Q+A    + ++ATN+  +L+ ED    DV+M +  ++ +
Sbjct: 238  QEHGITTDSGITDEELSRTLIQIAEQVGVKVIATNDFHYLTREDAPVQDVVMCIGTNSKI 297

Query: 241  SQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
               +R      + Y+K   EM ++F   PEA +NTVEIA +C+  L   + ILP +    
Sbjct: 298  DDPNRIRMEGSEFYMKTEEEMRALFPYCPEACDNTVEIAEKCNVELDWDSIILPNYP--- 354

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              D  +  E++ R +   GL  R       +     D R+R +FE  VI    F+ YFLI
Sbjct: 355  LLDPGETHESQFRRECEEGLAKRYGDDWDGREIGGVDIRERFEFEYKVICDKGFAAYFLI 414

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VA++++WAK+N I VGPGRGS AG++ AYA+ IT  DPL   L+FERFL+P+R  MPD D
Sbjct: 415  VAEYVRWAKQNGIGVGPGRGSAAGALVAYAMDITTFDPLSNGLMFERFLSPERTEMPDID 474

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR EVI +V+  YG E+V  +IT+ +++AK A+ D  R L  P     RL K++
Sbjct: 475  MDFDDERRLEVIEHVRQLYGPEKVTHVITYSTIKAKQAINDAARVLDYPVYMGQRLSKMV 534

Query: 480  PNDPAHPVS-------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
              DP   +         +       F EA   D    R+++ +  +EGL R    HA  +
Sbjct: 535  SADPGVKLKQVLEKQPGKEDLYSPDFVEAYQKDEDARRIIDTALSIEGLTRGEGVHACAV 594

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            +I    +++ VP   D +  + +TQ+    +   GL+K DFLGL+TLT++ K+   + + 
Sbjct: 595  LICRDAVNEHVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKANIKKS 654

Query: 593  G-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
              + +D+  IPFDD + + L+++  T G+FQ+ES+GM   ++ M+P   + ++AL++LYR
Sbjct: 655  FGIDIDVDAIPFDDPKIFELMSSGRTAGVFQVESAGMTATIKNMKPTEYKHVVALIALYR 714

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+   +V  Y NR NGKE  VS  P +D +L ET G ++YQEQVM I+  + G+S  E
Sbjct: 715  PGPLGAGMVTSYINRMNGKEPAVSYDPRLDGILGETYGTMVYQEQVMLISVEMCGFSKGE 774

Query: 710  AD-VLRRAMGKKIK------------EEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            +D  +R+ + KK               E +   + +++GA KNG  +++A  I++ + +F
Sbjct: 775  SDSRIRKPVAKKKIKMLTDQVFKWSDGEDETIYDHWMNGAEKNGYKRSVAQKIWDDVLEF 834

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A Y FNKSH+A YA++  QTAW+K HYP E++AA +T      +KI  +    R   I +
Sbjct: 835  ASYAFNKSHSAGYAILVMQTAWLKAHYPNEYMAAVLTSYTGKTDKIVHYVSACRHDGIAV 894

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSK 875
            +PP +N    +F      + + LA I+GVG    + I+E      PF +L DF  RVDS 
Sbjct: 895  LPPDINESGTEFTATPEGVRFGLAGIRGVGEGVTQAIIEEREKGGPFKNLHDFVERVDSS 954

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLD-----NIQKYAQWVEKNRTNKHENIF--- 927
            + NRRV+E+L+  GA D  GY R QL+  +D     NI   A   +K+R     ++F   
Sbjct: 955  QANRRVIEALIKGGAFDSTGYPRRQLMHFVDRDNPENIIDAAVKRQKDRAAGQTSLFDVF 1014

Query: 928  -AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK--------- 977
               E   F   +        +  ++   E+ VLG Y S HPL  Y+  L K         
Sbjct: 1015 GDVEGSGFEVIVPEPDGQEWDRHMKLSFEKEVLGIYVSDHPLRPYEYALAKAREFTLSQI 1074

Query: 978  ------MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                  MG  G   +     G     A MV    ++ T+ G  +  V   +   E     
Sbjct: 1075 DTGFETMGPTGNAVNQEIPEGKPYWWAGMVSGVGKRVTKNGDPMAIVQLEDMEGEATVVV 1134

Query: 1032 FP 1033
            FP
Sbjct: 1135 FP 1136


>gi|282891879|ref|ZP_06300358.1| hypothetical protein pah_c200o024 [Parachlamydia acanthamoebae str.
            Hall's coccus]
 gi|281498139|gb|EFB40479.1| hypothetical protein pah_c200o024 [Parachlamydia acanthamoebae str.
            Hall's coccus]
          Length = 1241

 Score =  945 bits (2442), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1071 (34%), Positives = 581/1071 (54%), Gaps = 66/1071 (6%)

Query: 23   LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
            ++ + S+N I +K A  + PA+A+TD  N++ A+EF +    A ++PI+GC++ +  +  
Sbjct: 1    MDASASINLIAEKAAEFKMPAVALTDHGNMYGAVEFFKACQGAQVKPILGCEVYVAPESR 60

Query: 83   LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
            L     G         + LL  + EGY+ L +L S  +L        RI    L++   E
Sbjct: 61   LDRKKIGNRSD---FHLTLLAKSMEGYKNLCKLSSIGFLEG-FYYHPRIDHEVLEKY-KE 115

Query: 143  GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE----- 197
            GLI L+G  S  +       + +   K L  +K LFG+  Y+ +QRH   +   +     
Sbjct: 116  GLICLSGCLSSRLSSEILQGTPESIRKHLAWYKDLFGEDYYLEVQRHTMSEENIQRDGLY 175

Query: 198  --------------------SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
                                  +V+L+    +PLVATN+S ++  ED+  H++L+ V   
Sbjct: 176  QETWLLQNYQEYIEKQTKVTQALVELSQEFGIPLVATNDSHYIEREDWREHEILLNVQSG 235

Query: 238  TVV----------------SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
                               + K R   + + Y K+ ++M  +F DLP+AL +T+EIA +C
Sbjct: 236  EPCEILEKDAMGNPKFRQLNPKRRVYSSHECYFKSPTQMQEVFKDLPQALASTLEIAEKC 295

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEEN-------ELRNKAVAGLEVRLAQGAIAK---- 330
               L       P ++    +     +E         L +    G++ R     +AK    
Sbjct: 296  HVQLDFKTKHYPVYVPPFLEGQSYTKEERAQAVEKYLWDLCEEGIKKRYDADKLAKIQEL 355

Query: 331  ---GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                   Q  R+RL++E+ +I   + S Y LIV DFI WAK+N IPVGPGRGSGAGS+  
Sbjct: 356  FPDKDPTQIVRERLEYEMGIIVPKEMSDYLLIVWDFINWAKRNQIPVGPGRGSGAGSIVL 415

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            Y + +TDI+PLRF L FERF+NP+R+S PD D+D C DRR +VI+Y   KYG + VAQII
Sbjct: 416  YLIGVTDIEPLRFHLFFERFINPERLSYPDIDVDICMDRRGDVIQYTLEKYGKDNVAQII 475

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            TFG+++A+ A++DVGR L +P S+V+ + KL+P D    +  +A+  D   R     D  
Sbjct: 476  TFGTMKARMAIKDVGRVLSVPLSKVNEIAKLVPEDLNITLE-KALEKDPDLRAMYETDED 534

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
              R+++I +KLEG  R    HAAGI+I   PLS ++P+     SD+P TQ++MK +E  G
Sbjct: 535  AKRIIDIGKKLEGSIRSTGIHAAGIIISGAPLSSIIPICNAKDSDMPATQYSMKPVEMVG 594

Query: 568  LIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            ++K DFLGLKTLT +Q+ +  +    G  +D   +P DD  T+ LL    TLG+FQLES+
Sbjct: 595  MLKVDFLGLKTLTAIQQCVASVNVSTGKLIDWVNLPLDDVRTFDLLNQGKTLGVFQLESA 654

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            GM+     +  D  E+IIA+ +LYRPGP+D I  + NRK+G+E I + HP +  +L ET 
Sbjct: 655  GMQDLARQLHLDKFEEIIAVGALYRPGPMDMIPSFINRKHGREPIENDHPWMKDILAETY 714

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK   +M +Q+E+F  GA +N I +T +
Sbjct: 715  GIMVYQEQVMQIASKLARYSLGEGDVLRRAMGKKDMAQMAQQREKFRLGALENEIEETTS 774

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
            + +F+ + KFA YGFNKSHAAAY  +SY TA++K ++P E++A+ MT + D++ K+ KF 
Sbjct: 775  MLVFDKMEKFAAYGFNKSHAAAYGYLSYVTAYLKANHPREWMASLMTCDSDDLSKVAKFI 834

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865
            ++A+   I I+PP +N     F      I +++  IKGVG      I++      PF   
Sbjct: 835  REAQTMGIAILPPDINEAGSTFIATPQGIRFAMKGIKGVGEGVVEAIVQERNRSGPFTHF 894

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
              F  R+D KK+ ++ +E+LV AG+ D  G+SR  L QS+D + + A   ++   +    
Sbjct: 895  YQFFKRIDLKKVGKKSIENLVDAGSFDFTGWSRDALRQSIDPMYETALKEKREEQSGVLT 954

Query: 926  IFAHEKGTFSDKITLEK--FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
             F     T   K +      +  +       E+ +LGF+ +GHPLD ++  ++++    +
Sbjct: 955  FFDLMGATSEAKFSFAPNVLNPTSKQNILLKEKELLGFFLTGHPLDSFQEYMQRLSCVNF 1014

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
                        R A ++ S Q + + K   +   +  S+  + YE   +P
Sbjct: 1015 SAIDMLGNDAVFRSAVIIESVQLRLSAKTQKKFAILRISDGIESYELPIWP 1065


>gi|300780861|ref|ZP_07090715.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium
            genitalium ATCC 33030]
 gi|300532568|gb|EFK53629.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium
            genitalium ATCC 33030]
          Length = 1185

 Score =  945 bits (2442), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1069 (30%), Positives = 529/1069 (49%), Gaps = 48/1069 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  SFVHL  H+ +S+L+G   ++ + ++++    PA+ +TD  N+F +  F ++   
Sbjct: 1    MAKKSSFVHLHNHTEFSMLDGMAKVDLLAEEVSRQGMPAVGMTDHGNMFGSNAFYRRMTD 60

Query: 65   AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AGI+PIIG +  +  +                    +         +L   A G + L  
Sbjct: 61   AGIKPIIGIEAYMAPESRFNKKRVLWGTPDQKGDDVSASGAYLHQTMLAENATGLRNLFR 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   +G+I  TG  SG +           A +    +
Sbjct: 121  LSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQYDQALEAAAMW 179

Query: 175  KKLF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++  D  ++ L  H    +R     ++++    +LP + TN+  ++ E    AH+ ++
Sbjct: 180  QDIYGKDNYFLELMDHGLTIERRVREDLLRIGEALDLPPLVTNDCHYVLESQAPAHEAML 239

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAP 290
             V     +   DR +     +Y+K+  +M + + D +P+  +NT+ +A R     ++ A 
Sbjct: 240  CVQTGKTLLDPDRFKFDGTGYYIKSAEQMRNDWDDMVPDGCDNTLWVAERVGDYGELWAE 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +        +     LR +   GL+ R     +      +DYR R D+E++VI  
Sbjct: 300  HPHDRMPIATVPEGETPTTWLRKEVHRGLDERFEGKEV-----PEDYRTRADYEIDVIDM 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A+   I VGPGRGS AGS+ AYALTIT+IDP+   LLFERFLNP
Sbjct: 355  KGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGSLVAYALTITNIDPMEHGLLFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468
            +R S PD DIDF   RR E++ Y    +G +++AQ+ITFG+++ K A++D  +    Q  
Sbjct: 415  ERPSAPDIDIDFDDRRRGEMLTYAAENWGEDKIAQVITFGTVKTKQAIKDSAKVNFGQEG 474

Query: 469  YSQVDRL-CKLIPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            + + DR+   L P   A  + L  I D            R     DP V ++ E ++ LE
Sbjct: 475  FQKADRINAALPPAIMAKDIPLSGITDPEHDRYSEATEVRSMIETDPDVAKIYETARGLE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++   PL   +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 535  GVVRQAGVHACAVIMASVPLMDHIPMWKRPADGALITGWDYPACEAIGLLKMDFLGLRNL 594

Query: 580  TLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +++ +   RG  +DL  +  D+   Y LL+   TLG+FQL+  GM++ L+ M+P 
Sbjct: 595  TVIGDAIENIEKNRGETIDLEALDTDNEAVYELLSRGDTLGVFQLDGGGMQELLKRMKPT 654

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQ 692
               DI+A ++LYRPGP+  +    Y +RKNG++ I  IHP ++     +L ET G+I+YQ
Sbjct: 655  GFNDIVASLALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEPLKEILDETYGLIVYQ 714

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQ+M I+Q ++ Y+  +AD  R+AMGKK  E + ++ E+F  G   NG SK     ++  
Sbjct: 715  EQIMNISQKVANYTAGQADGFRKAMGKKKPEVLAQEYEKFSQGMFDNGYSKAAVDALWGT 774

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA Y FNKSHAA YA++SY TA++K +Y  E++AA +T   D  +K   +  D R  
Sbjct: 775  IEPFASYAFNKSHAAGYALVSYWTAYLKANYAAEYMAALLTSVGDKKDKSAIYLADCRHL 834

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSR 871
             I ++PP +N     F   D  I Y LAAI+ VG      IME       F +  D+  +
Sbjct: 835  GISVLPPDINESEETFMAVDKDIRYGLAAIRNVGAEVVESIMESRRTKGAFTNFSDYLDK 894

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---- 927
            +D    N+R+ ESL+ AGA D   + R  LL   D+        +K       ++F    
Sbjct: 895  IDLLPCNKRITESLIKAGAFDSLDHPRKGLLLVSDDAVDSVLTTKKAADKGQFDLFSAFG 954

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              ++ T +  I +          +   E+ +LG Y SGHPLD ++  +         + +
Sbjct: 955  GDQEATNAFSIEVPD-DEWEKKHKLALEREMLGLYVSGHPLDGFEEAIDAQTDTPLPKIL 1013

Query: 988  --ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
                  G+ + +  ++    ++ ++K GS    VT  +    + E   F
Sbjct: 1014 EGEMRHGDEVTIGGIISGVDRRYSKKDGSPWAIVTLEDHHGAQVEVLLF 1062


>gi|322378547|ref|ZP_08052994.1| DNA polymerase III subunit alpha [Helicobacter suis HS1]
 gi|321149024|gb|EFX43477.1| DNA polymerase III subunit alpha [Helicobacter suis HS1]
          Length = 1212

 Score =  944 bits (2441), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1058 (34%), Positives = 590/1058 (55%), Gaps = 47/1058 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL +H+ YSLL+GA  +  +  KI      +++++D  N+F A++F       GI+P
Sbjct: 18   NFTHLHLHTEYSLLDGANKIKVLAKKIKELGMESVSMSDHGNMFGAIDFYTCMKKEGIKP 77

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  I    NL     G         + L     EGY  L+ L S+ +L        
Sbjct: 78   IIGMEAYIHNSTNL-----GDKQSKQRFHLCLYAKDLEGYHNLMYLSSQAFLEG-FYYFP 131

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTFKKLFG 179
            RI    L+E   +GLI  +    G I+            +       A++    ++ +FG
Sbjct: 132  RINKKLLKE-RCKGLICSSACLQGEINWHLNTLSEKNKKYGAKGYDEAKRVAEEYQSIFG 190

Query: 180  DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +  Y+ + RH   ++ + E Q+++L+    + L+ATN++ + ++ED  A ++ M VA   
Sbjct: 191  EDFYMEIMRHGIANQLFIEDQILKLSLETGIKLIATNDTHYTNQEDASAQEIAMCVAMGK 250

Query: 239  VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             ++   R R +  + Y+K+ ++M  +F+D+PEALENT EIA++C   + +     P    
Sbjct: 251  TLNDPTRLRHSVHEFYIKSPAQMAKLFADIPEALENTQEIAQKCQLEIDLKDESNPPTPP 310

Query: 298  K----------ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
            +          E  DI+++      +KA  GL+ RL    I +      Y +RL++E+ V
Sbjct: 311  RFKFTQEYALSEGLDIKEDAP-YFAHKAREGLKKRLEMVDIKEHAR---YEERLEYEIKV 366

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I  M+F+GY LIV DF+++A++NNIPVGPGRGS AGS+ A+ L ITDIDPL++ LLFERF
Sbjct: 367  ITDMRFAGYMLIVWDFVRYARENNIPVGPGRGSAAGSLVAFCLQITDIDPLKYDLLFERF 426

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPD D DFCQ RR E++ Y+  KYG   VAQ+ITF  + AK  +RDV R L M
Sbjct: 427  LNPERVSMPDIDTDFCQRRRGEMLDYMIAKYGKYNVAQVITFNKMLAKGVIRDVARVLDM 486

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
            PY + D + KLIPN     +  +A   + + +           + + S +LE L R A  
Sbjct: 487  PYKEADEMAKLIPNRLGITLQ-EAYDLEPKIQTLLQTSTLAKEVWDFSLRLENLNRSAGK 545

Query: 528  HAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            HAA +V+  +R L    P+Y   R+   VTQ++MK++E   LIKFDFLGLKTLT++  +L
Sbjct: 546  HAAALVVDSERELWYKTPLYTSERTGGIVTQYSMKYLEAIDLIKFDFLGLKTLTVIHDAL 605

Query: 587  DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            + + +    K+D   +  DD + Y  +    T+GIFQ+ES   +   + ++P   EDIIA
Sbjct: 606  NIIKKYSHEKIDFLRVDMDDPKVYATIQEGNTVGIFQIESGMFQTLNKRLRPSRFEDIIA 665

Query: 646  LVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            +++L RPGP+++ +V  + NRK+G   I  +   ++P+L+ T G IIYQEQVMQI Q ++
Sbjct: 666  IIALGRPGPMESGMVDDFVNRKHGSAPITYMFDALEPILRPTYGTIIYQEQVMQIVQTIA 725

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G+SL EAD++RRAMGKK  + M   + +F+ GA K G     A  +F+L+ KFA YGFNK
Sbjct: 726  GFSLGEADLIRRAMGKKDAQIMADNRAKFVEGAEKKGFDCNKAGELFDLIVKFAGYGFNK 785

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA++++QTA++KTHY   F+AA ++ E  +++ +  + ++A    I+I  P VN 
Sbjct: 786  SHSAAYAMLTFQTAYLKTHYKHAFMAAMLSSECRHIDSVAYYVEEANSMGIEIKRPHVNV 845

Query: 824  PCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLN 878
              V F+V    G+  I + L AIKG G      ++E       F  LED  S++D  K +
Sbjct: 846  SDVQFRVQDENGEKVIIFGLEAIKGAGEGPLGMLVELREKYGKFKDLEDLISKIDFSKFS 905

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK- 937
            +R+LE L+ +G+LD  GY+R  +L++LD I +  +  +K+       +FA+      +K 
Sbjct: 906  KRILEPLIKSGSLDNLGYNRKTMLENLDLICEEGRRKDKSNAQMSGGLFANLSTEDQEKA 965

Query: 938  -ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNI 995
             +TL+ +   + S   + E   +G YFSGHPLD +K  ++ +  +    + +    G+  
Sbjct: 966  HLTLKIYDEYDDSTLLDFEYECMGLYFSGHPLDAFKDQIKALKNVAKSRDILRLEIGSQA 1025

Query: 996  RLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                 ++  ++K  +K G   G  +  + +  ++   F
Sbjct: 1026 TFIGKILELKRKIGKKSGKPYGEASIVDLSGRFDLLLF 1063


>gi|322379743|ref|ZP_08054053.1| DNA polymerase III subunit alpha [Helicobacter suis HS5]
 gi|321147814|gb|EFX42404.1| DNA polymerase III subunit alpha [Helicobacter suis HS5]
          Length = 1212

 Score =  944 bits (2439), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1057 (34%), Positives = 588/1057 (55%), Gaps = 47/1057 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  +  +  KI      +++++D  N+F A++F       GI+PI
Sbjct: 19   FTHLHLHTEYSLLDGANKIKVLAKKIKELGMESVSMSDHGNMFGAIDFYTCMKKEGIKPI 78

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  I    NL     G         + L     EGY  L+ L S+ +L        R
Sbjct: 79   IGMEAYIHNSTNL-----GDKQSKQRFHLCLYAKDLEGYHNLMYLSSQAFLEG-FYYFPR 132

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTFKKLFGD 180
            I    L+E   +GLI  +    G I+            +       A++    ++ +FG+
Sbjct: 133  INKKLLKE-RCKGLICSSACLQGEINWHLNTLSEKNKKYGAKGYDEAKRVAEEYQSIFGE 191

Query: 181  RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ + RH   ++ + E Q+++L+    + L+ATN++ + ++ED  A ++ M VA    
Sbjct: 192  DFYMEIMRHGIANQLFIEDQILKLSLETGIKLIATNDTHYTNQEDASAQEIAMCVAMGKT 251

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R R +  + Y+K+ ++M  +F+D+PEALENT EIA++C   + +     P    +
Sbjct: 252  LNDPTRLRHSVHEFYIKSPAQMAKLFADIPEALENTQEIAQKCQLEIDLKDESNPPTPPR 311

Query: 299  ----------ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                      E  DI+++      +KA  GL+ RL    I +      Y +RL++E+ VI
Sbjct: 312  FKFTQEYALSEGLDIKEDAP-YFAHKAREGLKKRLEMVDIKEHAR---YEERLEYEIKVI 367

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
              M+F+GY LIV DF+++A++NNIPVGPGRGS AGS+ A+ L ITDIDPL++ LLFERFL
Sbjct: 368  TDMRFAGYMLIVWDFVRYARENNIPVGPGRGSAAGSLVAFCLQITDIDPLKYDLLFERFL 427

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D DFCQ RR E++ Y+  KYG   VAQ+ITF  + AK  +RDV R L MP
Sbjct: 428  NPERVSMPDIDTDFCQRRRGEMLDYMIAKYGKYNVAQVITFNKMLAKGVIRDVARVLDMP 487

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            Y + D + KLIPN     +  +A   + + +           + + S +LE L R A  H
Sbjct: 488  YKEADEMAKLIPNRLGITLQ-EAYDLEPKIQTLLQTSTLAKEVWDFSLRLENLNRSAGKH 546

Query: 529  AAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            AA +V+  +R L    P+Y   R+   VTQ++MK++E   LIKFDFLGLKTLT++  +L+
Sbjct: 547  AAALVVDSERELWYKTPLYTSERTGGIVTQYSMKYLEAIDLIKFDFLGLKTLTVIHDALN 606

Query: 588  FLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             + +    K+D   +  DD + Y  +    T+GIFQ+ES   +   + ++P   EDIIA+
Sbjct: 607  IIKKYSHEKIDFLRVDMDDPKVYATIQEGNTVGIFQIESGMFQTLNKRLRPSRFEDIIAI 666

Query: 647  VSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ++L RPGP+++ +V  + NRK+G   I  +   ++P+L+ T G IIYQEQVMQI Q ++G
Sbjct: 667  IALGRPGPMESGMVDDFVNRKHGSAPITYMFDALEPILRPTYGTIIYQEQVMQIVQTIAG 726

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            +SL EAD++RRAMGKK  + M   + +F+ GA K G     A  +F+L+ KFA YGFNKS
Sbjct: 727  FSLGEADLIRRAMGKKDAQIMADNRAKFVEGAEKKGFDCNKAGELFDLIVKFAGYGFNKS 786

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++++QTA++KTHY   F+AA ++ E  +++ +  + ++A    I+I  P VN  
Sbjct: 787  HSAAYAMLTFQTAYLKTHYKHAFMAAMLSSECRHIDSVAYYVEEANSMGIEIKRPHVNVS 846

Query: 825  CVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNR 879
             V F+V D      I + L AIKG G      ++E       F  LED  S++D  K ++
Sbjct: 847  DVQFRVQDQEGERVIIFGLEAIKGAGEGPLGMLVELREKYGKFKDLEDLISKIDFSKFSK 906

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-- 937
            R+LE L+ +G+LD  GY+R  +L++LD I +  +  +K+       +FA+      +K  
Sbjct: 907  RILEPLIKSGSLDNLGYNRRTMLENLDLICEEGRRKDKSNAQMSGGLFANLSTEDQEKAH 966

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIR 996
            +TL+ +   + S   + E   +G YFSGHPLD +K  ++ +  +    + +    G+   
Sbjct: 967  LTLKIYDEYDDSTLLDFEYECMGLYFSGHPLDAFKDQIKALKNVAKSRDILRLEIGSQAT 1026

Query: 997  LAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                ++  ++K  +K G   G  +  + +  ++   F
Sbjct: 1027 FIGKILELKRKIGKKSGKPYGEASIVDLSGRFDLLLF 1063


>gi|159900372|ref|YP_001546619.1| DNA polymerase III subunit alpha [Herpetosiphon aurantiacus ATCC
            23779]
 gi|159893411|gb|ABX06491.1| DNA polymerase III, alpha subunit [Herpetosiphon aurantiacus ATCC
            23779]
          Length = 1296

 Score =  944 bits (2439), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1060 (33%), Positives = 546/1060 (51%), Gaps = 54/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS YSLL+G  +   I ++ A  Q  +IAITD   ++ A+EF   A  A ++P
Sbjct: 3    DFVHLHVHSEYSLLDGYATTKAIAERAAELQMDSIAITDHGVMYGAMEFYANAKKANVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG +  I    N     +G         ++L+     GY+ L++L SR +L   GK   
Sbjct: 63   IIGMEAYIAPNSNKDPMVKGGK---NYYHLLLIAQNEVGYRNLVKLTSRSHLDGMGKGIF 119

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               RI    L++   EGLI+ +   +G + +       Q A + +  F+ LF  +  ++ 
Sbjct: 120  ARPRIDRQLLEQYH-EGLIVTSSCIAGEVIQQVQAKQRQKAIETVAWFRDLFGPENYFIE 178

Query: 186  LQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            LQ H           ++V++A    +PLVATN++ F+  ED + H  +MA+  +  + + 
Sbjct: 179  LQLHNNTPELVEINEELVRIANEMHVPLVATNDTHFVRREDLDTHSRVMAMGFNLTLQEL 238

Query: 244  DRPRVTPDHYLK--NRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKEC 300
                   D      +  EM   +     A +ENT  IA  C+  L      LP F   E 
Sbjct: 239  CSKNYQMDETYHIMSGDEMWDRYKIYGTAPMENTRRIADMCNLKLDFGRVELPEFDIPEG 298

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D      + LR     GL  R        G   ++Y QRL +EL+VI +  F  Y LIV
Sbjct: 299  HDA----ASYLRLICEEGLIKRC------NGNPTEEYVQRLSYELDVINQTGFPDYMLIV 348

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D++++A+ N IP  P RGS   S+  Y L ITD+DP++  LLFERFL+P+R+ MPD D 
Sbjct: 349  WDYVKFARSNGIPCLP-RGSAGASLVLYCLGITDVDPVQNKLLFERFLSPERLEMPDIDT 407

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR E++ Y+  KYG E VAQIIT+G+L AKAALRD+GR L +P S+VDR+ KLIP
Sbjct: 408  DFADARRGEILDYIATKYGRENVAQIITYGTLGAKAALRDMGRVLDIPLSEVDRVAKLIP 467

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              P      +++      ++    DP +  L++ +QK+EG  +   THA G+V+   PL 
Sbjct: 468  TLPVGMTIAKSLDKVPELKQIYDTDPKLRELMDWAQKVEGRMKSVGTHACGVVVSRHPLE 527

Query: 541  QLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
             +VP+ R  + +  V   F    + K GL+K D LGL  L++  ++L  + Q     + L
Sbjct: 528  NMVPLQRTTKDEHGVMAAFEGPTLAKMGLLKMDILGLTNLSVAAEALQLIEQTTGKTMWL 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S IP DD +T+  L    T+ +FQLES+GM + L  ++P  ++D+  +V+LYRPGP++ I
Sbjct: 588  SDIPLDDKKTFEALGRGETVDVFQLESAGMTRYLVQLKPTRVDDLYGMVALYRPGPLEQI 647

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             VY + KN    I  IHP++ P+L++T GVI+YQEQ+MQ+ Q ++ Y+L EA ++ +A+ 
Sbjct: 648  PVYIHNKNNPHAIKYIHPILKPILEDTYGVIVYQEQIMQLLQAVAEYTLGEAYIVIKAIS 707

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK KE M +   RF  G  + G+++  A  ++EL+  FA Y FN+ H+  Y ++SYQTAW
Sbjct: 708  KKNKELMAENSVRFKEGCLRKGLTQAQADELWELILPFAGYSFNRPHSTLYGLLSYQTAW 767

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR---- 834
            +K +YP E++ A+++     ++++ K   +A +  + + PP VN     F + D      
Sbjct: 768  LKNNYPTEYMTATLSAASGEIDEVAKSVAEASRLGVAVSPPDVNGSKEGFTIVDIAGELP 827

Query: 835  --------IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
                    I + L+AI+ VG    + I++   +  PF S+EDFC+RVD   LN+RV+ESL
Sbjct: 828  EGIKYNRGIRFGLSAIRNVGVGPIQAILKVRDESGPFSSIEDFCARVDRGVLNKRVMESL 887

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD------KIT 939
            V  GA+D    +R Q L  LD         +K R     ++F    G           I 
Sbjct: 888  VKCGAMDSLPGTRHQKLAILDRAISAGHETQKAREAGQNSLFDMLGGGEQTSTPTISPIP 947

Query: 940  LEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM----GIKGYEESVATIRGN 993
                +  +E        E+ +LG Y S HP+      L       G            G 
Sbjct: 948  FPPAATGLEMQRELLNWEKELLGMYISEHPMAQ---ALANAPHDPGRISLGMIDKKHIGT 1004

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             IRL  M+ + ++ +T+KG  +      +   E E   FP
Sbjct: 1005 TIRLIGMINNTKRIQTKKGDSMLVGKVEDLEGEIEFVAFP 1044


>gi|148653037|ref|YP_001280130.1| DNA polymerase III subunit alpha [Psychrobacter sp. PRwf-1]
 gi|148572121|gb|ABQ94180.1| DNA polymerase III, alpha subunit [Psychrobacter sp. PRwf-1]
          Length = 1203

 Score =  944 bits (2439), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1066 (36%), Positives = 601/1066 (56%), Gaps = 72/1066 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +HS +S+ +  + +  ++   AAD Q A+A+TD +NL++ ++F +    A I+P
Sbjct: 2    AFVHLGIHSEFSITDSIIRIKPMVKAAAADGQMALALTDLSNLYATVKFYRACLDAAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----G 125
            IIG ++ +D +                  + LL    EGYQ +  +VS  +   +     
Sbjct: 62   IIGAEIILDDEH---------------TRLTLLAMNNEGYQSITRIVSLGFTDGRMNPDN 106

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            + +  +  + L +  + G+I+L       + +A    + +   + +  ++ +FGDRLY  
Sbjct: 107  RGTPIVNKAHLLD-NSAGVIVLFT-EKSDVGQALLGANPERGHQLISEYQAVFGDRLYFA 164

Query: 186  LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            ++R  R  +     Q +     H +  VA N+  FL EED++AH+  + +A S V++  +
Sbjct: 165  IKRTKRALEDTFIEQAILAGQRHGIATVAHNDVRFLEEEDFDAHEARVCIASSHVLADPN 224

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP   + + YLK +++M  +FSD+P+ ++NTV +A+RC+  L +   +LP F   E + I
Sbjct: 225  RPHDYSSEQYLKTQAQMTELFSDIPQVVQNTVILAQRCNVTLTLGINVLPEFPVPEGETI 284

Query: 304  QKEEENELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                E+  R ++  GLE RL      ++         + Y +RL+ ELN+I  M F GYF
Sbjct: 285  ----ESFFRAESQRGLEARLDKLYPVSERDETWPEIRRPYDERLEHELNIILEMGFPGYF 340

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 341  LIVMDFIRWAKANGVPVGPGRGSGAGSLVAYALNITDLDPLHYDLLFERFLNPERVSMPD 400

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC + RD VI YV ++YG E V+QIITFG++ AKA +RDV R     Y   D++ K
Sbjct: 401  FDIDFCIEGRDRVIEYVASQYGREAVSQIITFGTMAAKAVVRDVARVQSKSYGLADKISK 460

Query: 478  LIPNDPAHPVSLQAIADDSRFREA-----RLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            LIP  P   +   A+ ++ + ++       +     + + E++ KLEG+ R+   HA G+
Sbjct: 461  LIPKTPGISLK-DALLEEPQLKDLLSNPDNMDYEDANEIWEMAIKLEGITRNVGKHAGGV 519

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            +I    ++    +Y D      V+QF+   +E  GL+KFDFLGL+ LT++  ++  + +R
Sbjct: 520  LIAPNKITDFSAIYCD-EEGHRVSQFDKDDVESVGLVKFDFLGLRNLTVINAAVKNINER 578

Query: 593  GVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
              +      +L  +P DD   Y LL    T  +FQLESSGM++ L  +QP  IED+IA+ 
Sbjct: 579  RARENKPALELEDLPLDDTNAYKLLQDAKTTAVFQLESSGMKKYLAKLQPTNIEDVIAMC 638

Query: 648  SLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +LYRPGP+D  +V  Y +RK+G+E++V  HP ++P+L+ T GVI+YQEQVMQI+Q+++GY
Sbjct: 639  ALYRPGPLDAGMVEMYIDRKHGREEVVYDHPNLEPILENTNGVIVYQEQVMQISQVMAGY 698

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL  AD+LRRAMGKK  EEM KQ++ F++GA+  GI   I+  +F+L+ KFA YGFNKSH
Sbjct: 699  SLGGADMLRRAMGKKKPEEMAKQRDIFVTGATAQGIDPVISGGVFDLMEKFAGYGFNKSH 758

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTP 824
            +AAY V++YQTA++K +YP EF+AA +T +M+N + +  F  D R  F++ +  PSVN  
Sbjct: 759  SAAYGVLAYQTAYLKYYYPAEFMAAVLTSDMNNTDNVVFFINDCRENFDLSVDNPSVNRS 818

Query: 825  CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVL 882
               F       I Y L AIKGVG      I++A      F  L DFC RVD KK+N+R L
Sbjct: 819  EWHFVADTPTNIIYGLGAIKGVGEGAVDSIVQARRQGGKFTDLYDFCRRVDIKKVNKRTL 878

Query: 883  ESLVFAGALDCFGYS-------------RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            E+L+ +G  D F  +             R  L+  L +  + A+   +N      ++F+ 
Sbjct: 879  EALIKSGCFDDFAITQRPDLAADERHQIRGALMAQLPSAVQAAEQERQNNEMGMMDLFSE 938

Query: 930  -EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYEESV 987
             +  T +  +  +   +     R + E+  LG Y +GHPLD Y+  +         +   
Sbjct: 939  VDNATTAPPLPTDSGLIWGDKHRLKAEKDTLGLYLTGHPLDQYRKEVAVYTSNARLDSLA 998

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
             T    +   A +++          G+R   +T  +     E + +
Sbjct: 999  DTGYNGSTFFAGLIMDI-----ANFGNR-CVITLDDGTARLEVSCY 1038


>gi|307565570|ref|ZP_07628050.1| DNA polymerase III, alpha subunit [Prevotella amnii CRIS 21A-A]
 gi|307345729|gb|EFN91086.1| DNA polymerase III, alpha subunit [Prevotella amnii CRIS 21A-A]
          Length = 1241

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/1120 (31%), Positives = 549/1120 (49%), Gaps = 105/1120 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62
             ++HL VH+ YS+L+G   ++N++DK   D    +AITD   +F   EF+          
Sbjct: 3    DYIHLHVHTHYSILDGQSKVSNLVDKAINDGMKGMAITDHGVMFGIKEFADYCATKNKER 62

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFP-TVPSIVLLVSTAEGYQRLIELVSRMYL 121
             A G +P              K+T++ K     +   +++L     GY+ LI+LVS+ ++
Sbjct: 63   KAKGEEPFKPIFGCEMYVARRKLTDKVKEMHDNSGYHLIVLAKNYNGYKNLIKLVSKSWV 122

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             D      R     L++   E LI+ +   +G I         + A +  L +KKLFGD 
Sbjct: 123  -DGYYYRPRTDREQLEKYH-EDLIICSACLAGEIPSKIRKGDIEGAREACLWYKKLFGDD 180

Query: 182  LYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             Y+ LQRH   D             +     ++Q A  + + LV TN+  F  +E  EAH
Sbjct: 181  FYLELQRHEVTDPNLIANREAFPLQQQVNRVLMQFAKDYNIKLVCTNDCHFEDKETAEAH 240

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            D L+ ++ +  +    R R +   + K R EM  IFSD+PEAL NT+EI  +       H
Sbjct: 241  DHLLCLSTNDDLDDPKRMRYSKQEWFKTREEMNQIFSDVPEALSNTIEILNKIEIYDINH 300

Query: 289  APILPRFIEKEC-------------DDIQKE----------------------------- 306
             PI+P F   E              +D+  E                             
Sbjct: 301  GPIMPFFPIPEDFGTEAQWREKFSKEDLYHEFTSDENGENQLPEQEANKVIDRLGGYEKI 360

Query: 307  -----EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 E + L   A  G   RL    +      ++   R+ FEL+V+  M F GYFLIV 
Sbjct: 361  YRIKFEADYLAKLAYDGAC-RLYGDPL-----PEEVNSRIRFELHVMKTMGFPGYFLIVQ 414

Query: 362  DFIQWA-KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            DFI  A  +  + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D 
Sbjct: 415  DFINAAENELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDT 474

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  D R +V+++V +KYGHE+ A IIT+ ++  K +++DV R  ++P  + + LCK IP
Sbjct: 475  DFDDDGRGKVLQWVMDKYGHEKCAHIITYSTMATKNSIKDVARVEKLPLERSNALCKAIP 534

Query: 481  NDP--AHPVSLQ-AIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGD 536
            +       ++L+ AI+     +EA +++   +R  ++ ++ LEG  R    HA G +I  
Sbjct: 535  DRLPNGMKMNLKNAISCTPMLQEAMVSENERERNTIKYAKMLEGTIRGTGIHACGFIICR 594

Query: 537  RPLSQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             P+   VP+      D     +PVTQ++   IE  GLIK DFLGLKTL+ L+++   + Q
Sbjct: 595  NPIDDWVPVSTATDPDFPDKKVPVTQYDGHVIETTGLIKMDFLGLKTLSELKEACKVIRQ 654

Query: 592  RG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D+  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +LY
Sbjct: 655  TTGKVIDIEKIPIDDALTYQLYQKGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNALY 714

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+
Sbjct: 715  RPGPMDYIPDFIKRKNDPSLVQYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGES 774

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D LR+AMGKK K  +D  K +FI    +NG    I   I+    KFA Y FNKSHA  Y+
Sbjct: 775  DALRKAMGKKKKNIVDAMKPKFIKQGQENGHDPKILEKIWSDWEKFASYAFNKSHATCYS 834

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++YQTA++K HYP E++AA MT     + +I K  ++ +   I+ + P VN   + F V
Sbjct: 835  WVAYQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKALKIETLGPDVNESQIGFGV 894

Query: 831  G-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                 I + L+AIKG+GT  A +I+ E   + P+  + +F  RVD   +NR+V+ESL ++
Sbjct: 895  NKHGEIRFGLSAIKGIGTGAAENIVKEREKNGPYKDIFNFIERVDLCSINRKVIESLAYS 954

Query: 889  GALDCFGY--SRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            G  D  G    R +           LD + +Y Q  +  +     ++F         +  
Sbjct: 955  GGFDNLGPIKCREEYFGVNAKGEVFLDTLLRYGQLFQTAKAEAANSLFGGFDSVPVTRPA 1014

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIRGN 993
            +       +  +   E+ ++G Y S HPLD +  +L  +            +     +  
Sbjct: 1015 IPVTEKWATIEKLNKERELVGIYLSAHPLDEFAVVLNHLCNTHCSQIHRNADMAELAKTE 1074

Query: 994  NIRLAAMVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032
             I    +V   ++  + +      +++  +     E   F
Sbjct: 1075 EITFGGIVTKVKESFSQKTNKPYAFISIEDFEGTAEIALF 1114


>gi|91761976|ref|ZP_01263941.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter ubique
            HTCC1002]
 gi|91717778|gb|EAS84428.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter ubique
            HTCC1002]
          Length = 1138

 Score =  942 bits (2436), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1037 (40%), Positives = 634/1037 (61%), Gaps = 32/1037 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             + +F HL++H+ YS+ EGA+ ++N+ D     + P + I+DT+NL  ALEF++     G
Sbjct: 5    NNQNFNHLKIHTQYSICEGAIKIDNLKDFCKEKKIPCLGISDTSNLCGALEFAENISKVG 64

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
             QPIIG Q+    +D   +             + L+     GY+R+IEL SR YL +   
Sbjct: 65   TQPIIGTQIYFRFEDTTGL-------------LPLIALNENGYKRIIELSSRSYLENDAL 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                + +  L  I TEG+ +L+G   G   + F         K   +    F D  Y+ +
Sbjct: 112  SDPHLDVKDLL-IDTEGVSLLSGTIQGLFGKLFEKGRLDEISKLYRSLSSKFNDNFYLEI 170

Query: 187  QRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH   +     +  ++ +   ++P++ATN   +L+ + +EAHD L  +   T V++K+R
Sbjct: 171  QRHGDQNEIAFEKFNLEQSLKIQIPIIATNEVYYLTPDMHEAHDALTCIGSKTYVNEKNR 230

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + +  HY K+  EM  +FSDLPEALEN   +  +C+F  Q   P+LP    ++      
Sbjct: 231  IKYSNQHYFKSNEEMSKLFSDLPEALENNFNLPFKCNFRPQFSKPVLPNISSEKG----G 286

Query: 306  EEENELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              +  L+  ++ GL+ +        +  +        Y+ RLD EL +I  MK+  YFLI
Sbjct: 287  SADEILKKDSLDGLKEKFLKVFKVEENNLKTDDKFLKYKDRLDHELKIIIEMKYPSYFLI 346

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V+D+I+WAK N+IPVGPGRGSGAGS+ A+ L+ITD+DP++F+L+FERFLNPDR+SMPDFD
Sbjct: 347  VSDYIKWAKNNDIPVGPGRGSGAGSLVAWCLSITDVDPIKFNLIFERFLNPDRVSMPDFD 406

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC+++RD V +Y+  KY  + VA IITFG L+A+  +RDVGR L +PY  VD + K+I
Sbjct: 407  IDFCEEKRDLVFKYLTTKY-KDSVAHIITFGKLKARMVIRDVGRVLGLPYGFVDSISKMI 465

Query: 480  PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P DP+ P SL + I  + R ++    DP V +L ++S KLEGL R+ +THAAG+VI DR 
Sbjct: 466  PFDPSRPQSLTECINSEPRLQKLVNEDPRVKKLTDLSLKLEGLNRNVATHAAGVVIADRK 525

Query: 539  LSQLVPMYRDVRSDL--PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            L+++VP+Y+D  +DL  P TQF+M   E AGLIKFDFLGLKTLT++ ++   + ++    
Sbjct: 526  LTEVVPLYKDAAADLLLPSTQFDMYSAENAGLIKFDFLGLKTLTVINRTQKLINKKVKDF 585

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  I FDD + + LL++  T+G+FQ+ES+GMR+AL  M+P+ IEDIIALV+LYRPGP+ 
Sbjct: 586  KIEDIDFDDQKVFELLSSGNTVGLFQVESAGMREALLQMKPNHIEDIIALVALYRPGPMS 645

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            NI +YN+ K+G++    +HPL++ +LK T GVIIYQEQVMQIAQ LSG++  EAD+LRRA
Sbjct: 646  NIPIYNDCKHGRQTPDYLHPLLEDILKPTYGVIIYQEQVMQIAQKLSGFTAGEADILRRA 705

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK + E++KQK+ FI+GA KNGISK +A +IF  +  FA+YGFNKSHAAAYA+ISYQT
Sbjct: 706  MGKKKRAELEKQKQGFIAGALKNGISKEVAASIFLKIEPFAEYGFNKSHAAAYAIISYQT 765

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++KT+YP EF AASMT+++ N  K+ +F ++ ++ NI+++ P +N    DF+  DN  Y
Sbjct: 766  AFLKTYYPKEFFAASMTMDISNQNKLGEFHEELKRINIKVIRPDINKCFADFQFDDNNFY 825

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y+L  IK VG     ++++    +  F S+ DF +RV+ K +N+  LE LV AGA D   
Sbjct: 826  YALGGIKSVGYEAISNVVKERNENGDFKSINDFLNRVNPKDINKLQLEGLVKAGAFDNID 885

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R  L  S+ N     + + +N+     ++F  ++   ++ +            R   E
Sbjct: 886  NNRQALFNSIPNFILKTKNIYENKAANQIDLFGSDEEQDNEIVL--NIEDWKFEDRLSRE 943

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
               +GF+ S HPL+ +K I     I  Y +           +AA ++   ++KT KG+  
Sbjct: 944  FEAIGFFISDHPLNQFKEIFDDYKIVDYAQFNLDDTIKEANIAATLLKITERKTAKGNSY 1003

Query: 1016 GWVTFSEPAKEYEANFF 1032
            G + F++    +E   F
Sbjct: 1004 GVIKFTDLTSVFELFIF 1020


>gi|304383785|ref|ZP_07366243.1| DNA-directed DNA polymerase III alpha subunit [Prevotella marshii DSM
            16973]
 gi|304335041|gb|EFM01313.1| DNA-directed DNA polymerase III alpha subunit [Prevotella marshii DSM
            16973]
          Length = 1238

 Score =  942 bits (2436), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1119 (31%), Positives = 554/1119 (49%), Gaps = 106/1119 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66
             FVHL VH+ YS+L+G  S+ N+++K  A+    +AITD  N+F   EF           
Sbjct: 3    DFVHLHVHTYYSILDGQSSIENLVEKAVANGMKGMAITDHGNMFGTKEFYNYCKGVNARL 62

Query: 67   -------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                    +PIIGC++ +      K     +    +   +++L     GY+ LI+LVSR 
Sbjct: 63   KAEGKPAFKPIIGCEMYVA--HRKKTDKVFEKGDRSGYHLIVLAKNYTGYKNLIKLVSRS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++ D      R     L+    EGLI+ +   +G + R       + A + +  + ++FG
Sbjct: 121  WV-DGFYMRPRTDREDLERFH-EGLIVCSACIAGEVPRKILSGDMEGAREAVEWYHRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +  Y+ +QRH   D             +     ++ L   + + ++ TN++ F+ +E+ E
Sbjct: 179  EDYYLEMQRHEVKDPHVKANRETFPQQQRANKVLLTLGKEYGIKVICTNDAHFVDQENAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    +   +R   T   + K R EM  +F+D PEAL NT+EI  +      
Sbjct: 239  AHDHLLCLSTGKDLDDPNRLIYTKQEWFKTREEMNEVFADQPEALTNTLEILDKVEVYSI 298

Query: 287  VHAPILPRFIEKECDDIQKE---------------------------------------- 306
               PI+P F   E    +++                                        
Sbjct: 299  DSLPIMPFFPIPESFGTEEDIRRRYTKEQLFEEFTRDENGNEILSREEAEQKIEKLGGYD 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L   A  G +              ++  +R+ FEL+++  M F GYFLI
Sbjct: 359  KLYRIKFEADYLAKLAYDGAKPLYGDPL------PEEVAERIKFELHIMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A+ N  + VGPGRGS AGSV AY L IT IDP+++ LLFERFLNPDR+S+PD 
Sbjct: 413  VQDFINSARNNLGVLVGPGRGSAAGSVVAYCLGITKIDPIKYDLLFERFLNPDRISLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R +V+ +V++KYGH++VA IIT+G++  K +++DV R  ++P  Q + LCK+
Sbjct: 473  DTDFDDDGRGKVLEWVEDKYGHDKVAHIITYGTMATKNSIKDVARVERLPLEQANYLCKV 532

Query: 479  IPNDPAHPVSLQ---AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP+     + +    AI      REA  + D  +   ++ ++ LEG  R    HA G +I
Sbjct: 533  IPDRLPDGMKMNLTNAIKAVPELREAEASPDERLSNTMKYAKMLEGTVRGTGIHACGTII 592

Query: 535  GDRPLSQLVPMY-----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
                +S  VP+       D    L  TQ++   IE+ GLIK DFLGLKTL++L+++++ +
Sbjct: 593  CRDAISDWVPVSVAEDKADPGHKLLCTQYDGHVIEETGLIKMDFLGLKTLSILKEAVENI 652

Query: 590  A-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
                G  +DL  IP DD  TY L     T+G FQ ES+GM++ L  +QP   ED+IA+ +
Sbjct: 653  RISTGDVIDLDHIPIDDKLTYQLYCEGRTIGTFQFESAGMQKYLRELQPSVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK    KI    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPDFIARKRDNSKIKYDLPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            ++D LR+AMGKK  ++M+  +  F  G +KNG  K +   I+E   KFA Y FNKSHA  
Sbjct: 773  QSDTLRKAMGKKQIDKMNHLEGLFYEGGAKNGYPKEVLSKIWEDWKKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ +++QTA++K HYP E++AA M+  ++N+ +I KF  + +   I  + P VN     F
Sbjct: 833  YSWVAFQTAYLKAHYPAEYMAAVMSRNLNNIAEITKFMDECKAMGISTLGPDVNESRQKF 892

Query: 829  KVGDN-RIYYSLAAIKGVG-TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V     I + LAAIKG+G       I E   + PF  + D   R++   +NR+ LESLV
Sbjct: 893  SVNKKGEIRFGLAAIKGMGDAAADAIIAERDKNGPFKDVFDVVQRINLNAVNRKALESLV 952

Query: 887  FAGALDCFGYSRMQLLQ-------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
             +G LD F  +R             LD + +Y Q  +  +     ++F   +       +
Sbjct: 953  LSGGLDSFRIARESFFAPDNRGNQFLDTLIRYGQLYQMEQNEAQNSLFGGTEAVEIATPS 1012

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES------VATIRGN 993
            +      +   R   E+ ++G Y S HPLD +  I   +      E           + +
Sbjct: 1013 VPSAEPWSPPERLNRERDLVGIYLSAHPLDDFGMIFHNLCNTACTEVGQDGRREELSKRD 1072

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +    +V S + K T+ G   G+VT  +     E  FF
Sbjct: 1073 ELIFGGIVTSNKSKFTKTGKPCGFVTLEDFEGSGELAFF 1111


>gi|295107511|emb|CBL05054.1| DNA polymerase III, alpha subunit [Gordonibacter pamelaeae 7-10-1-b]
          Length = 1154

 Score =  942 bits (2435), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/1048 (32%), Positives = 549/1048 (52%), Gaps = 44/1048 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA----- 64
            +FVHL  H+ YSLL+G   + +++ + A    PA+AI+D   +    +  +         
Sbjct: 2    AFVHLHNHTEYSLLDGHTHIYDMVKRAADLGMPAVAISDHGVMSGVPQLCEMCDKVEEET 61

Query: 65   -AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
               ++PI GC++     + LK   +     P +  ++LL  T EGY  L++LVS  ++ D
Sbjct: 62   GKRVKPIYGCEVYFTTDEELKRDGK-----PKLYHLLLLAKTNEGYHNLVKLVSESHV-D 115

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRL 182
                  R   S LQ+ G +G+I  +   +G I +         A      F   F     
Sbjct: 116  NFYYKPRTTFSMLQKYG-KGIIGSSACIAGIIPKLLDNRQFDDAVAWANKFASCFEPGDF 174

Query: 183  YVNLQRHRGYDRY------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            Y+ LQ                  +  +A    L  +ATN+  +L++ED +A D ++ VA 
Sbjct: 175  YIELQNQGIRTDAGFTQTELNHMLTDVARAAGLKTIATNDFHYLTKEDAKAQDYMLCVAQ 234

Query: 237  STVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
               V+ + R R + D  Y+K+  EM     D PEA + TVE+A +   +L+    ILPRF
Sbjct: 235  GAAVNDEKRMRFSNDEFYMKSEEEMREALKDFPEACDTTVEVAEKVDVVLE-RDSILPRF 293

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
               E +     EE+  R +   GL               Q+ ++R D+E+ +I +  F  
Sbjct: 294  PLPEGE----TEESYFRRRVQEGLVKHYGSPV------PQEAQERADYEMGIIIQQGFPA 343

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV ++I+WA+   I VGPGRGS AG++ AYA+ IT +DPL   LLFERFL+P+R+ M
Sbjct: 344  YFLIVQEYIEWARSQGIGVGPGRGSAAGAIVAYAMDITALDPLSNGLLFERFLSPERVEM 403

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF Q RR+EVI ++++ YG + V+Q+ITFG+LQAK A+RD  R L  PY+  DR+
Sbjct: 404  PDIDVDFEQGRREEVINHIKDVYGEDHVSQVITFGTLQAKNAVRDAARVLDYPYNTGDRI 463

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            CKLI ++    +  +A+A +   ++A   +  V  +++ ++ +EG  R    HA   +I 
Sbjct: 464  CKLIGDELGITID-KALATNPDLKKAYETEEDVKAVIDAAKSIEGHVRGEGVHACATIIC 522

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
              P++  VPM RD +    +TQ++  +  + GL+K DFLGL+TL +L  +   + QR   
Sbjct: 523  RDPMADHVPMKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLDVLSIACRNVEQRFGT 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            KV    IP DD   + L+ +    G+FQ+E +        + P    DI+A ++L RPGP
Sbjct: 583  KVVPEEIPIDDEAAFKLMQSGNMDGLFQVEGALYVSLFARLPPTRFSDIVASIALNRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +++ +V  Y    +GK +I      + P+L+ET G ++YQEQ+MQI+  +SG+S  +AD 
Sbjct: 643  LESGMVDDYVKVASGKTQIHYYDDRLRPILEETYGTMVYQEQIMQISMAMSGFSAGKADK 702

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LR+AMGKK  + M   +E + +GA +NG S  IA  I+E   KFA Y FNKSH+AAYA++
Sbjct: 703  LRKAMGKKKLDVMRALQEDWNTGAVENGFSLAIAKQIWEDAEKFAKYAFNKSHSAAYAIL 762

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
              +TA++K HYP +F+AA ++  M N +++ ++          ++PP +N+   +F   D
Sbjct: 763  VMRTAYLKAHYPNDFMAAVLSSYMGNTDRLIRYIASCNHNGTPVLPPDINSSNAEFTPTD 822

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + I + L  ++GVG   A  I+E   A+ P+ SL DF +R+D+K  NR+ LE+L+  GA 
Sbjct: 823  DGIRFGLVGVRGVGANVAEAIIEEREANGPYTSLHDFVNRLDAKCYNRKTLEALIKGGAF 882

Query: 892  DCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSV 945
            D  GY+R QL+  +D   + + A   +K+R     ++F          F +++       
Sbjct: 883  DSTGYTRKQLMYFVDETPLLESASKRQKDRDRGQVSMFDLFGDDPDSGFEEEVPEPDGVE 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSK 1004
                     E+ ++  Y S HPL  Y+  + +M      +     +   +     M+ + 
Sbjct: 943  WPKRQLLSYEKEIMKIYVSDHPLRPYEGTIARMTKFQLGDLAERTKEIKSATFVGMISTV 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              K T++G+++   T  +     E   F
Sbjct: 1003 VTKLTKRGTKMATFTLEDTTGHIECICF 1030


>gi|71083603|ref|YP_266322.1| DNA polymerase III subunit alpha [Candidatus Pelagibacter ubique
            HTCC1062]
 gi|71062716|gb|AAZ21719.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter ubique
            HTCC1062]
          Length = 1138

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1037 (40%), Positives = 633/1037 (61%), Gaps = 32/1037 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             + +F HL++H+ YS+ EGA+ ++N+ D     + P + I+DT+NL  ALEF++     G
Sbjct: 5    NNQNFNHLKIHTQYSICEGAIKIDNLKDFCKEKKIPCLGISDTSNLCGALEFAENISKVG 64

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
             QPIIG Q+    +D   +             + L+     GY+R+IEL SR YL +   
Sbjct: 65   TQPIIGTQIYFKFEDTTGL-------------LPLIALNENGYKRIIELSSRSYLENDAL 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                + +  L  I TEG+ +L+G   G   + F         K   +    F D  Y+ +
Sbjct: 112  SDPHLDVKELL-IDTEGVSLLSGTIQGLFGKLFEKGRLDEISKLYRSLSSKFNDNFYLEI 170

Query: 187  QRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH   +     +  ++ +   ++P++ATN   +L+ + +EAHD L  +   T V++K+R
Sbjct: 171  QRHGDQNEIAFEKFNLEQSLKIQIPIIATNEVYYLTPDMHEAHDALTCIGSKTYVNEKNR 230

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + +  HY K+  EM  +FSDLPEALEN   +  +C+F  Q   P+LP    ++      
Sbjct: 231  IKYSNQHYFKSNEEMSKLFSDLPEALENNFNLPFKCNFRPQFSKPVLPNISSEKG----G 286

Query: 306  EEENELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              +  L+  ++ GL+ +        +  +        Y+ RLD EL +I  MK+  YFLI
Sbjct: 287  SADEILKKDSLDGLKEKFQKVFKIEENNLKTDDKFLKYKDRLDHELKIIIEMKYPSYFLI 346

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V+D+I+WAK N+IPVGPGRGSGAGS+ A+ L+ITD+DP++F+L+FERFLNPDR+SMPDFD
Sbjct: 347  VSDYIKWAKNNDIPVGPGRGSGAGSLVAWCLSITDVDPIKFNLIFERFLNPDRVSMPDFD 406

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC+++RD V +Y+  KY  + VA IITFG L+A+  +RDVGR L +PY  VD + K+I
Sbjct: 407  IDFCEEKRDLVFKYLTTKY-KDSVAHIITFGKLKARMVIRDVGRVLGLPYGFVDSISKMI 465

Query: 480  PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P DP+ P SL + I  + R ++    DP V +L ++S KLEGL R+ +THAAG+VI DR 
Sbjct: 466  PFDPSRPQSLTECINSEPRLQKLVNEDPRVKKLTDLSLKLEGLNRNVATHAAGVVIADRK 525

Query: 539  LSQLVPMYRDVRSDL--PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            L+++VP+Y+D  +DL  P TQF+M   E AGLIKFDFLGLKTLT++ ++   + ++    
Sbjct: 526  LTEVVPLYKDAAADLLLPSTQFDMYSAENAGLIKFDFLGLKTLTVINRTQKLINKKVKDF 585

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  I FDD + + LL++  T+G+FQ+ES+GMR+AL  M+P+ IEDIIALV+LYRPGP+ 
Sbjct: 586  KIEDIDFDDQKVFELLSSGNTVGLFQVESAGMREALLQMKPNHIEDIIALVALYRPGPMS 645

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            NI +YN+ K+G++    +HPL++ +LK T GVIIYQEQVMQIAQ LSG++  EAD+LRRA
Sbjct: 646  NIPIYNDCKHGRQTPDYLHPLLEDILKPTYGVIIYQEQVMQIAQKLSGFTAGEADILRRA 705

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK + E++KQK+ FI+GA KNGISK +A +IF  +  FA+YGFNKSHAAAYA+ISYQT
Sbjct: 706  MGKKKRAELEKQKQGFIAGALKNGISKEVAASIFLKIEPFAEYGFNKSHAAAYAIISYQT 765

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++KT+YP EF AASMT+++ N  K+ +F ++ ++ NI+++ P +N    DF+  DN  Y
Sbjct: 766  AFLKTYYPKEFFAASMTMDISNQNKLGEFHEELKRINIKVIRPDINKCFADFQFDDNNFY 825

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y+L  IK VG     ++++    +  F S+ DF +RV+ K +N+  LE LV AGA D   
Sbjct: 826  YALGGIKSVGYEAISNVVKERNENGDFKSINDFLNRVNPKDINKLQLEGLVKAGAFDNID 885

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R  L  S+ N     + + +N+     ++F  +    ++ +            R   E
Sbjct: 886  NNRQALFNSIPNFILKTKNIYENKAANQIDLFGSDDEQDNEIVL--NIEDWKFEDRLSRE 943

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
               +GF+ S HPL+ +K I     I  Y +           +AA ++   ++KT KG+  
Sbjct: 944  FEAIGFFISDHPLNQFKEIFDDYKIVDYAQFNLNDTIKEANIAATLLKITERKTAKGNSY 1003

Query: 1016 GWVTFSEPAKEYEANFF 1032
            G + F++    +E   F
Sbjct: 1004 GVIKFTDLTSVFELFIF 1020


>gi|297562140|ref|YP_003681114.1| DNA polymerase III subunit alpha [Nocardiopsis dassonvillei subsp.
            dassonvillei DSM 43111]
 gi|296846588|gb|ADH68608.1| DNA polymerase III, alpha subunit [Nocardiopsis dassonvillei subsp.
            dassonvillei DSM 43111]
          Length = 1186

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/1075 (31%), Positives = 549/1075 (51%), Gaps = 61/1075 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SF HL VH+ YS+L+GA  L  +  + A    PA+A+TD  N+F A EF Q++   G+
Sbjct: 2    ADSFAHLHVHTEYSMLDGAAKLKPLFKEAARLGMPAVAMTDHGNMFGAYEFYQQSKGTGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAEGYQ 110
             PIIG +  +  +                        +  +       + +L    +G +
Sbjct: 62   TPIIGIEAYVAPESRFHKKRVFWGRSSGSDDASAEGGKDISGGGRYLHMTMLAQNEKGLR 121

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L  + S   +        R+ L  + E  +EG+I+ TG  SG +         + A   
Sbjct: 122  NLFRMSSLASMEG-YYMKPRMDLELMSEY-SEGIIVSTGCPSGGVQTRLRLGQEKEAVAY 179

Query: 171  LLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
                + +F  + +++ L  H    ++     ++++    ++P + TN+S ++ E    AH
Sbjct: 180  AAGLQDIFGKENVFLELMDHGVPIEKEVRDGLLRVGRELDIPPLVTNDSHYVYESQASAH 239

Query: 229  DVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSI--FSDLPEALENTVEIARRCS--- 282
            D L+AV     +    R R     +YLK+  EM  I  F +  +   NT+ +A R     
Sbjct: 240  DALLAVGVGKNLDDPTRFRFNGSGYYLKSAEEMRGILNFEEWEQGCRNTLLVAERIDPGA 299

Query: 283  -FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
               +  H  ++P F   E +     + + L  +    L  R   G         + RQR+
Sbjct: 300  YDAVFAHRDLMPVFPVPEGE----TQASWLAKEVERLLPTRYPDGING------EIRQRV 349

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            DFEL +I  M F  YFL+VAD  Q+A+KN I +GPGRGS AGS+ AY L ITD+DPL   
Sbjct: 350  DFELGIINEMGFPAYFLVVADICQYARKNGIALGPGRGSAAGSMIAYVLGITDLDPLEHG 409

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R++MPD D+DF + RR E+I YV   YG ERVAQI+TFG+++AKAA++D 
Sbjct: 410  LLFERFLNPERVTMPDVDLDFDERRRGEMIEYVTRLYGAERVAQILTFGTIKAKAAVKDS 469

Query: 462  GRALQMPYSQVDRLCKLIPND-PAHPVSLQA--------IADDSRFREARLADPSVDRLL 512
             R L MPYS  D++ K  P       + L+A          + +  R     D  V +++
Sbjct: 470  TRILGMPYSVGDQITKAFPAAVGGKEIPLEAVTNTEHERYGETTELRNLIDNDAQVAKVM 529

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            E ++ +EGL R    HAAG+++   PL  ++P+++       +T F     E  GL+K D
Sbjct: 530  ETARGIEGLTRGTGVHAAGVILSKEPLLDVIPLHKRDTDGAIITGFPYPQCEDMGLLKMD 589

Query: 573  FLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGL+ LT++  ++  + +  G+ +DL  +P DD +TY LL+   TLG+FQL+   MR  
Sbjct: 590  FLGLRNLTIMDDAVKSIKEAEGIDIDLGKLPLDDRKTYQLLSRGDTLGVFQLDGGAMRNL 649

Query: 632  LEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKET 685
            L+ M+P    DI A++SLYRPGP+  +    Y +R NG++++  IHP +    +P+L ET
Sbjct: 650  LKRMEPKKFGDIAAVLSLYRPGPMAANAHNDYADRSNGRQEVTPIHPELKDALEPILGET 709

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
              +++YQEQ+M IAQ L+GY+L  AD++RRAMGKK KE +++++ +F  GA   G SK  
Sbjct: 710  FHLLVYQEQIMAIAQQLAGYTLGGADLMRRAMGKKKKEALEEEEAKFFPGAEARGFSKEA 769

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               +++++  FA Y FNKSHAA YA++SY TA++K ++P  ++AA +T   D+ +K+  +
Sbjct: 770  TQALWDVMLPFAGYAFNKSHAAGYALVSYWTAYLKANHPAAYMAALLTSVSDDKDKMAVY 829

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDS 864
              + R   I+++PP VN   + F      I + + A++ VG      I+        F S
Sbjct: 830  LAECRTQGIKVLPPDVNESGLRFTPVGKDIRFGMGAVRNVGANVVNSIIRTRTEKGKFSS 889

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              DF S+++    N+RV+ESL+ AG  D  G  R +L +  +         +K   +   
Sbjct: 890  FTDFLSKIELAACNKRVIESLIKAGGFDSLGQPRRELYRHHETAVDGMISSKKQEAHGQF 949

Query: 925  NIFAHEKGTFSDKITLE---KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            ++F       S  I L         +   +   E+ +LG Y S HPL   + +L +    
Sbjct: 950  DLFGGGDDGDSTPIGLNINWGDEEWDRKTKLAFEREMLGLYVSSHPLAGAERVLARSRDT 1009

Query: 982  GYEESVA---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               + VA         +R++ ++    ++  + G++    T  +     E  FFP
Sbjct: 1010 SIAQIVAGEMARERGEVRISGLISKVDKRTNKAGNQWAIATVEDLDASMEVLFFP 1064


>gi|327402957|ref|YP_004343795.1| DNA polymerase III subunit alpha [Fluviicola taffensis DSM 16823]
 gi|327318465|gb|AEA42957.1| DNA polymerase III, alpha subunit [Fluviicola taffensis DSM 16823]
          Length = 1463

 Score =  941 bits (2432), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1085 (31%), Positives = 554/1085 (51%), Gaps = 80/1085 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   FVHL  H+ +++L+  +++  ++ +      PA+A+TD  N+ +A  F +    AG
Sbjct: 254  KDVPFVHLHNHTQFTILQSTMNVKGLVKQAVKHNMPAVALTDIGNMMAAFHFEKAI--AG 311

Query: 67   IQPIIGCQLDIDMQDNLKMTNQ-----------------GKTPFPTVPSIVLLVSTAEGY 109
            I   I  +     ++   ++ +                  K+       +V +    +GY
Sbjct: 312  INSEIEAERKEAEENGQTISKKPLLPIIGCEMYVCRDRLDKSVKDNGSLVVFIAKNKKGY 371

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              LI+L S  +         RI  S +++   E LI+LTGG +G I         + AE+
Sbjct: 372  HNLIKLASISHTEGM-YYVPRIDKSAVEQYH-EDLIVLTGGLNGEIPSLLLNVGEKQAEE 429

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             L+ +K LFG+ LYV + RH   D  R  + +++LA  HE+ LVATNN+ + S ED   H
Sbjct: 430  ALVWWKNLFGEDLYVEIMRHGQEDENRVNASLIKLAQKHEVKLVATNNTFYGSREDANTH 489

Query: 229  DVLMAVAHS---TVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            D+L+ V      T    K R         ++Y K+  EM  +F DLPEA+E+  EI  + 
Sbjct: 490  DILLCVRDGEQVTTPKGKGRNFRFGLENEEYYFKSADEMKELFLDLPEAIESISEILGKI 549

Query: 282  SFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
                     +LP F         +   D  ++ E   LR+    G   R  +        
Sbjct: 550  EHYPLAREVLLPAFDIPDEFKDPQDAIDGGKRGENAFLRHLTYEGAAKRYPE-------I 602

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              + R RLDFEL  + +  + GYFLIV DF Q A+   + VGPGRGS AGS  AY   IT
Sbjct: 603  TDEIRDRLDFELATVEKTGYPGYFLIVQDFCQAARDMGVAVGPGRGSAAGSAVAYCTGIT 662

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            ++DP+ + LLFERFLNPDR+SMPD DIDF  + R  VI +V  KYG  +VAQIIT+G++ 
Sbjct: 663  NVDPIAYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVIDWVIEKYGSNQVAQIITYGTMA 722

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLADPS---- 507
            AK+++RD GR L +P    + L KLIP++     +L AI   ++ +  E     P     
Sbjct: 723  AKSSIRDAGRVLDLPLMDTNLLAKLIPDN----FTLDAIFNWEEPKLAEKLANSPQDLAN 778

Query: 508  -------------VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
                           ++L  +Q++EG  R+   HA G++I    ++  VP+     + + 
Sbjct: 779  VQELRAVSKGTDMRAQVLRQAQRIEGSVRNTGIHACGVIITPDDITNFVPVSLAKDTGMW 838

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLT 613
             TQF+    E+AGL+K DFLGLKTLTL++ ++  + +R  + +D    P DD +TY L  
Sbjct: 839  CTQFDNSVAEEAGLLKMDFLGLKTLTLIKDAVKNVKKRHDIDLDPDTFPIDDEKTYELFQ 898

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
               T+GIFQ ES GM++ +  ++P    D+IA+ +LYRPGP++ I  +  RKNG+++I  
Sbjct: 899  RGETVGIFQYESPGMQKYMRELRPSVFADLIAMNALYRPGPLEYIPDFIKRKNGEQEIKY 958

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                 +  LKET G+ +YQEQVM ++Q L+G+S  +ADVLR+AMGKK +  +DK K +F+
Sbjct: 959  DLDACEEFLKETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKQRYILDKMKPQFV 1018

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
                + G    +   I++    FA Y FNKSH+  YA I+YQTA++K +YP EF+A+ ++
Sbjct: 1019 EQGQERGHDPVVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKANYPAEFMASVLS 1078

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARH 852
              ++++ ++  F ++ R+  I+++ P VN    +F V     I + L  IKG+G+    +
Sbjct: 1079 NNLNDIAQVSFFMEECRRMGIEVLGPDVNESAYEFTVNQHGAIRFGLGGIKGLGSGPVEN 1138

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ------- 903
            I+E    +  F S+ +   R++ + +N++ +ES+ +AG  D F G  R Q          
Sbjct: 1139 IIENRQEEGSFQSIFEMTKRLNLRIVNKKAMESMAYAGCFDSFKGAHRAQYFALDAGGKT 1198

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             ++N  KY   ++ N  +   ++F         + T+      N   +   E+ V+G + 
Sbjct: 1199 FIENALKYGNSLQDNENSAQVSMFGESADVKMPEPTIPNSEEWNLLYKLNREKEVVGIFI 1258

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            SGHPLD ++  +        E         G +  + A++   Q   T+ G   G +   
Sbjct: 1259 SGHPLDDFRVEIEAFCNGNVELLSNVKNHLGRDFTIPAIITDAQHLTTKTGKPFGLILIE 1318

Query: 1022 EPAKE 1026
            + +  
Sbjct: 1319 DYSNT 1323


>gi|227503307|ref|ZP_03933356.1| DNA polymerase III subunit alpha [Corynebacterium accolens ATCC
            49725]
 gi|227075810|gb|EEI13773.1| DNA polymerase III subunit alpha [Corynebacterium accolens ATCC
            49725]
          Length = 1190

 Score =  940 bits (2430), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/1074 (29%), Positives = 538/1074 (50%), Gaps = 53/1074 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+ SFVHL  H+ +S+L+G   ++ + D++     PA+ +TD  N++ +  F ++  +
Sbjct: 1    MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVKQNMPAVGMTDHGNMYGSDAFYKRMTS 60

Query: 65   AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIG +  +  +                    +         ++   A G + L  
Sbjct: 61   AGVKPIIGIEAYMAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMIAENATGLRNLFT 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   +G+I  TG  SG +           A +    +
Sbjct: 121  LSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFNEALEAAAMW 179

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++  D  ++ L  H    ++     ++++    +LP + TN+  ++ E    AH+ ++
Sbjct: 180  QDIYGKDNFFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPAHEAML 239

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAP 290
             V         DR +     +Y+K+ ++M   + DL P+  +NT+ IA R     +V   
Sbjct: 240  CVQTGKTFMDPDRFKFGGTGYYIKSAAQMRDTWDDLIPDGCDNTLWIAERVQDYSEVWEE 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +            + L ++ + GL+ R     +      ++Y +R  +E++VI  
Sbjct: 300  HPHDRMPIADVPEGHTPTSWLTHEVMEGLQQRFPGRDV-----PEEYIERAKYEISVIEM 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I++A+   I VGPGRGS AG++ AYALTIT+IDPL   LLFERFLNP
Sbjct: 355  KGYPSYFLIVAELIKYARSVGIRVGPGRGSAAGALVAYALTITNIDPLEHDLLFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468
            +R S PD DIDF   RR E+I Y   ++G ++VAQ+ITFG+++ K A++D  +    Q  
Sbjct: 415  ERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAKVHFGQPG 474

Query: 469  YSQVDRL---------CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            +   DR+          K IP         +  ++ +  R+    DP V ++ + ++ LE
Sbjct: 475  FQMADRINGALPPAIMAKDIPLRGITDPDHERYSEAAEVRQMVETDPDVKKIYDTARGLE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++    L   +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 535  GVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 594

Query: 580  TLLQKSLDFLAQ-RGVKVDLSLIPFDDHET---YHLLTTKGTLGIFQLESSGMRQALEGM 635
            T++  +++ + + RG +V L  +  DD +    Y LL+   TLG+FQL+S GM++ L+ M
Sbjct: 595  TVIGDAIENIKRNRGEEVQLEQLHADDPKVSKVYDLLSRGDTLGVFQLDSGGMQELLKRM 654

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVI 689
            +P   +DI+A ++LYRPGP+  +    Y +RKNG+++I  IHP ++     +L ET G+I
Sbjct: 655  KPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEILDETYGLI 714

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + +Q ++F  G  +NG SK+    +
Sbjct: 715  VYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMQENGYSKSAMDAL 774

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +  +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K   +  D 
Sbjct: 775  WGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKSAIYLSDC 834

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDF 868
            R   I ++PPSVN    DF+     I + + AI+ VG+     I+ +  A   F S  D+
Sbjct: 835  RHLGINVLPPSVNESEEDFQAVGEDIRFGMGAIRNVGSEVVESIIASRKAKGAFTSFSDY 894

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              ++D    ++RV E+L+ AGA D F   R  L+   ++     Q  +K       ++FA
Sbjct: 895  LDKIDLAACSKRVTEALIKAGAFDDFQQPRKGLMLIHEDAVDAVQTTKKAADKGQFDLFA 954

Query: 929  HEKGTFSD------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
               G           I +   S  +       E+ +LG Y SGHPLD ++  L       
Sbjct: 955  GFGGGDDASSEGAFAIDVPDDS-WDRKHELALEREMLGLYVSGHPLDGFEEALAAQTNTP 1013

Query: 983  YEESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
              + +      G  + +  ++    ++ +++ GS    VT  +    + E   F
Sbjct: 1014 LTKILNDEVHNGQELIIGGIISGVDRRFSKRDGSPWAIVTVEDHNGAQVEILVF 1067


>gi|306836456|ref|ZP_07469431.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium
            accolens ATCC 49726]
 gi|304567675|gb|EFM43265.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium
            accolens ATCC 49726]
          Length = 1190

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/1074 (29%), Positives = 539/1074 (50%), Gaps = 53/1074 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+ SFVHL  H+ +S+L+G   ++ + D++     PA+ +TD  N++ +  F ++  +
Sbjct: 1    MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVKQNMPAVGMTDHGNMYGSDAFYKRMTS 60

Query: 65   AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIG +  +  +                    +         ++   A G + L  
Sbjct: 61   AGVKPIIGIEAYMAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMIAENATGLRNLFT 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   +G+I  TG  SG +           A +    +
Sbjct: 121  LSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFNEALEAAAMW 179

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++  D  ++ L  H    ++     ++++    +LP + TN+  ++ E    AH+ ++
Sbjct: 180  QDIYGKDNFFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPAHEAML 239

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAP 290
             V         DR +     +Y+K+ ++M   + DL P+  +NT+ IA R     +V   
Sbjct: 240  CVQTGKTFMDPDRFKFGGTGYYIKSAAQMRDTWDDLIPDGCDNTLWIAERVQDYSEVWEE 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +            + L ++ + GL+ R     +      ++Y +R  +E++VI  
Sbjct: 300  HTHDRMPIADVPEGHTPTSWLTHEVMEGLQRRFPGRDV-----PEEYIERAKYEISVIEM 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I++A+   I VGPGRGS AG++ AYALTIT+IDPL   LLFERFLNP
Sbjct: 355  KGYPSYFLIVAELIKYARSVGIRVGPGRGSAAGALVAYALTITNIDPLEHDLLFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468
            +R S PD DIDF   RR E+I Y   ++G ++VAQ+ITFG+++ K A++D  +    Q  
Sbjct: 415  ERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAKVHFGQPG 474

Query: 469  YSQVDRL---------CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            +   DR+          K IP         +  ++ +  R+    DP V ++ + ++ LE
Sbjct: 475  FQMADRINGALPPAIMAKDIPLRGITDPDHERYSEAAEVRQMVETDPDVKKIYDTARGLE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++    L   +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 535  GVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 594

Query: 580  TLLQKSLDFLAQ-RGVKVDLSLIPFDDHET---YHLLTTKGTLGIFQLESSGMRQALEGM 635
            T++  +++ + + RG +V L  +  DD +    Y LL+   TLG+FQL+S GM++ L+ M
Sbjct: 595  TVIGDAIENIKRNRGEEVQLEQLHADDPKVSKVYDLLSRGDTLGVFQLDSGGMQELLKRM 654

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVI 689
            +P   +DI+A ++LYRPGP+  +    Y +RKNG+++I  IHP ++     +L ET G+I
Sbjct: 655  KPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEILDETYGLI 714

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + +Q ++F SG  +NG SK+    +
Sbjct: 715  VYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWSGMQENGYSKSAMDAL 774

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +  +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K   +  D 
Sbjct: 775  WGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKSAIYLSDC 834

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDF 868
            R   I ++PPSVN    DF+     I + + AI+ VG+     I+ +  A   F S  D+
Sbjct: 835  RHLGINVLPPSVNESEEDFQAVGEDIRFGMGAIRNVGSEVVESIIASRKAKGAFTSFSDY 894

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              ++D    ++RV E+L+ AGA D F   R  L+   ++     Q  +K       ++FA
Sbjct: 895  LDKIDLAACSKRVTEALIKAGAFDDFQQPRKGLMLIHEDAVDAVQTTKKAADKGQFDLFA 954

Query: 929  HEKGTFSD------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
               G           I +   S  +       E+ +LG Y SGHPLD ++  L       
Sbjct: 955  GFGGGDDASSEGAFAIDVPDDS-WDRKHELALEREMLGLYVSGHPLDGFEEALAAQTNTP 1013

Query: 983  YEESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
              + +      G  + +  ++    ++ +++ GS    VT  +    + E   F
Sbjct: 1014 LTKILNDEVHNGQELIIGGIISGVDRRFSKRDGSPWAIVTVEDHNGAQVEILVF 1067


>gi|297626372|ref|YP_003688135.1| DNA polymerase III alpha subunit [Propionibacterium freudenreichii
            subsp. shermanii CIRM-BIA1]
 gi|296922137|emb|CBL56705.1| DNA polymerase III alpha subunit [Propionibacterium freudenreichii
            subsp. shermanii CIRM-BIA1]
          Length = 1190

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1079 (32%), Positives = 551/1079 (51%), Gaps = 65/1079 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG- 66
            S +F HL VH+ YS+L+GA S + +  ++A    PA+A+TD  N+F A EF Q A     
Sbjct: 3    SKNFAHLHVHTEYSMLDGAASNDKLFAEVARQGMPAVAMTDHGNMFGAYEFYQTAKKYDG 62

Query: 67   -----IQPIIGCQLDIDMQDNLKMT-----------------NQGKTPFPTVPSIVLLVS 104
                 ++PIIG +  +     L  +                  +  +       + +L +
Sbjct: 63   EQNPLVKPIIGIEAYVAPSTRLSRSPEFWGNRRDTGSPDTEGGKDVSGGGRYTHMTMLAA 122

Query: 105  TAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS 164
             A G   L +L S            R+    + +  +EG+I  TG  SG +         
Sbjct: 123  NATGLHNLFKLSSLASYEG-YYMKPRMDRELIAKY-SEGIIGSTGCPSGEVQTRLRLGQF 180

Query: 165  QVAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
            + A +    ++ +   +  Y  L  H    +    + +++LA   +LPL+ATN+S +++E
Sbjct: 181  EEACEAAAAYQDILGKENYYCELMDHGVDIEHQVRADLLRLAKRLKLPLLATNDSHYVTE 240

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            +  + HD L+ +         DR R     +Y+K  +EM ++F  L EA +NT+ IA R 
Sbjct: 241  DQADDHDNLLCIGVGRNKDDPDRFRFNGSGYYIKTAAEMRALFPGLEEAADNTLAIAERI 300

Query: 282  SFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
                +V + +  +P+F     +     +E+ LR K   GL+           + +    +
Sbjct: 301  ESYEEVFSYVDRMPQFDVPAGE----TQESWLRKKVKIGLKKHYGD------HPSDAVME 350

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            R++ EL VI  + FS YFL+V+D    A+K  +PVGPGRGS AGS+ AY   I  IDPL 
Sbjct: 351  RVETELKVIEPLGFSSYFLVVSDICDAARKMGVPVGPGRGSAAGSIIAYLTDIIAIDPLE 410

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TF  ++AKAA++
Sbjct: 411  HGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGEEYTSQVNTFNKIKAKAAVK 470

Query: 460  DVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDR 510
            D  R L  P+S  DR+ K +P D     V L  + D+S         FR    +DP V R
Sbjct: 471  DANRILGYPFSLGDRITKAMPPDVMGKGVPLNKLFDESNGRYSEGQEFRNLYNSDPDVKR 530

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            +++    +EGL R +  HA   ++    L  LVPM++  +  + +  F    +E+ GL+K
Sbjct: 531  VVDTGMGIEGLIRGSGVHACAFILSSEKLLNLVPMHKRDKDGMIIAGFAYPQLEEMGLMK 590

Query: 571  FDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             DFLGL+ L ++   +  + + RG  VDL  +P DD  TY L+    TLG+FQL+   MR
Sbjct: 591  MDFLGLRNLGIMDHCVKNIKRNRGEDVDLQKLPLDDAATYELMARGDTLGVFQLDGGAMR 650

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLK 683
              L  M P C +DIIA+++LYRPGP+  +  + Y +RKNG+  IV IHP +    D +L 
Sbjct: 651  SLLRQMGPTCFDDIIAVIALYRPGPMGANAHIEYADRKNGRRPIVPIHPELKDDLDEILA 710

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +D+  + F  G   NG S 
Sbjct: 711  PTYHLIVYQEQIMAIARKLAGYTLGGADLLRRAMGKKKKYILDENFKPFQKGMRDNGYSD 770

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                 +++++  FA Y FNKSHA  YA++SY TA++K +YP E+ AA +T   D+ +K+ 
Sbjct: 771  ESMQALWDVMVPFAGYAFNKSHATGYALVSYWTAYLKANYPAEYGAALLTSVGDDKDKMA 830

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPF 862
             +  D R   I+++ P VN    +F      I + L AI+ VG +    I+EA  D  P 
Sbjct: 831  LYLSDMRAQRIKVLAPDVNASEKEFTAVGEDIRFGLGAIRNVGDSVVGGIVEARTDHGPA 890

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
                +F   V     N+R +ESL+ AGA D  G+SR  L+   +        +++N+ N 
Sbjct: 891  HDFFEFLDNVPLSVCNKRCIESLIKAGAFDSMGHSRRALMDVFETAVDGVIDLKRNQANG 950

Query: 923  HENIFAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL-- 975
             +++F    G  ++       T+      +   +   E+ +LG Y S HPL   + +L  
Sbjct: 951  QDDLFGDLGGGDAESDPAMNHTVPDIPDWDKRTKLAFEREMLGLYVSDHPLRGLEHVLSA 1010

Query: 976  -RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             R +G+    E  A   G+   +  M+   Q+K+T+KG+    +   +     +   FP
Sbjct: 1011 ERTIGLGQIAEQGAEADGHVEVICGMITQVQRKQTKKGAFWAIIDVEDLDASMQVLIFP 1069


>gi|225163584|ref|ZP_03725893.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
 gi|224801819|gb|EEG20106.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
          Length = 1183

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/968 (36%), Positives = 534/968 (55%), Gaps = 46/968 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +     F+HL VH+ YSLL+G+  ++ ++ +     Q AIA+TD  N+F A+ F  +A  
Sbjct: 1   MPSPSDFIHLHVHTDYSLLDGSCRVDRLMSRAKELGQTAIALTDHGNMFGAISFYNEAKK 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGI+P+IGC+  I     L+ T + +    +   + +L    EGYQ L++LVS  +L   
Sbjct: 61  AGIKPLIGCEFYIAPGSRLEKTGKSEDGK-SYYHLGVLARNLEGYQNLLKLVSDAHLKG- 118

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
                R  L  L    ++GLI  TG  +  + +    +  + A      + ++F  +  +
Sbjct: 119 FYYKPRADLETLARY-SKGLIGFTGCLASEVCQNLMHDRFEDARAACARYVEIFGRENYF 177

Query: 184 VNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           V +Q H   ++ +    +++L     L ++ATN+  ++  ED   HD L+ +     +++
Sbjct: 178 VEIQDHGIPEQRKIIPGLLKLGEEFGLKVIATNDVHYIRSEDANPHDALLCIQTGAKLAE 237

Query: 243 KDRPRV-TPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHA--PILPRFIEK 298
           ++R +  T + YLK+R EM  IF  +LPE+L NT+ +A  C   +         PR+   
Sbjct: 238 ENRMKFDTQEFYLKSRDEMFKIFGRELPESLTNTLAVAEMCDLSIPFPKGSERYPRYPLP 297

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIA--------------------KGYHAQDYR 338
                +      L    V GL+ R                           +     DY 
Sbjct: 298 AEIKARYSASQYLHQLCVEGLKHRYGHDHDPVALRPVVAERLAKLHNLAPGQKPAPPDYT 357

Query: 339 Q---------RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
           +         R+ +E  +I    F  YFL+V DFI WAK++ IPVGPGRGSGAG + AY 
Sbjct: 358 ELAPEEVLVLRMGYEQAIINVTGFVDYFLVVWDFINWAKQHTIPVGPGRGSGAGCLVAYL 417

Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
           L IT+IDP+RF LLFERFLNP+R+S PDFDIDFC  RR+EVI YV+ KYG++ VA IIT+
Sbjct: 418 LGITNIDPIRFGLLFERFLNPERVSPPDFDIDFCMRRREEVINYVRQKYGNDCVANIITY 477

Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
           G+L AK A+RD+ R   + ++  DR+ K+IP +    +   +I      R     +P   
Sbjct: 478 GTLGAKMAIRDIARVHDLAFADADRISKMIPEEIGISLE-DSIKKSEELRTEISRNPMTK 536

Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
           R+++ +  +EGL R+   HAAGI+I D+PL   VP+    +      QF+M  I K GL+
Sbjct: 537 RIIDTALVVEGLVRNTGKHAAGIIITDQPLDDFVPL--TSQEGDVTVQFDMGAITKLGLL 594

Query: 570 KFDFLGLKTLTLLQKSLDFLAQR---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
           K DFLGLKTLT++  ++D +          D+  IP DD +TY LL    T+G+FQLES 
Sbjct: 595 KMDFLGLKTLTIISDAVDNVRHTVPGQKDFDIDTIPLDDPKTYELLNAGKTVGVFQLESP 654

Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
           GM+ A   +    ++DI A+ +LYRPGP+  I  Y   K     I   H L++P+LKET 
Sbjct: 655 GMQNASRQVGISTVDDINAISALYRPGPMQFIPDYARGKKDPANITYPHKLLEPVLKETF 714

Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG-ISKTI 745
           G+I+YQEQVM+ A++++GY+L  AD+LRRAMGKK  E M +++ +F+SGA ++  I +  
Sbjct: 715 GIIVYQEQVMECARVIAGYTLGGADMLRRAMGKKDAEAMAQERVKFVSGAKEHHNIDEKK 774

Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
           A  IF+LL KFA YGFNKSH+AAYAV++YQTA++K +YPV+F+AA +T E+ N EK+  F
Sbjct: 775 ANEIFDLLNKFAQYGFNKSHSAAYAVVAYQTAYLKANYPVQFMAAVLTAELGNAEKVAHF 834

Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDS 864
             +A    + ++ P +N    +F    ++I + LA IKGVG   ++ I+ E  A+ P+  
Sbjct: 835 IAEAEAMGLTVLGPDINESGANFTPVGDKIRFGLAGIKGVGEGASQKIIAEREANGPYKD 894

Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            +DF  RVD+K  N+RVLE L   GA D  G SR  +   +D     A    K+R     
Sbjct: 895 FDDFTLRVDNKSANKRVLEHLAKTGAFDFSGESRKAIFARVDAALASAVLQAKDRAAGQS 954

Query: 925 NIFAHEKG 932
             F   + 
Sbjct: 955 GFFDLLEA 962


>gi|227548935|ref|ZP_03978984.1| DNA polymerase III subunit alpha [Corynebacterium lipophiloflavum DSM
            44291]
 gi|227078960|gb|EEI16923.1| DNA polymerase III subunit alpha [Corynebacterium lipophiloflavum DSM
            44291]
          Length = 1186

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/1069 (29%), Positives = 530/1069 (49%), Gaps = 47/1069 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+ SFVHL  H+ +S+L+G   ++ + D++     PA+ +TD  N+F +  F ++   
Sbjct: 1    MAKNSSFVHLHNHTEFSMLDGMAKVDLLADEVIRQGMPAVGMTDHGNMFGSNAFYRRMVE 60

Query: 65   AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIG +  +  +                    +         +L   A G + L +
Sbjct: 61   AGVKPIIGIEAYMAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMLAENATGLRNLFK 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L +      Q  +  R+    + E   +G+I  TG  SG +           A +    +
Sbjct: 121  LSTLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFDAALEAAAMW 179

Query: 175  KKLF-GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++  D  ++ L  H  + +R     ++++    ELP + TN+  ++ E    AH+ ++
Sbjct: 180  QDIYGKDNYFLELMDHGLHIERRVRDDLLKIGEILELPPLVTNDCHYVLESQAPAHEAML 239

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAP 290
             V     +  +DR +     +Y+K+ ++M  I+ S +P+  +NT+ IA R     ++   
Sbjct: 240  CVQTGKTMMDQDRFKFDGTGYYIKSAAQMREIWDSTVPDGCDNTLWIAERVGDYSELWEE 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +        +     LR + + GLE R     +      Q+Y  R ++E++VI  
Sbjct: 300  HPHDRMPVADVPEGETPTTWLRKEVMRGLEERFPGSEV-----PQEYIDRANYEVDVIDM 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A++  I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLNP
Sbjct: 355  KGYPSYFLIVAEIIKHAREIGIRVGPGRGSAAGALVAYALTITNIDPIEHGLLFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468
            +R S PD DIDF   RR E+I Y   ++G +++AQ+ITFG+++ K A++D  +    Q  
Sbjct: 415  ERPSAPDIDIDFDDRRRGEMITYAAERWGEDKIAQVITFGTVKTKQAIKDAAKVWFGQPG 474

Query: 469  YSQVDRL---------CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            +   DR+          K IP         +   + +  R     DP V ++ E ++ LE
Sbjct: 475  FQMADRINSALPPAIMAKDIPLVGITDPEHERYPEAAEVRTLIETDPDVAKIYETARGLE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++   PL + +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 535  GVVRQAGVHACAVIMASVPLMEHIPMWKRPADGALITGWDYPACEAIGLLKMDFLGLRNL 594

Query: 580  TLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++  +   RGV +DL  +  D+   Y LL+   TLG+FQL+S GM+  L+ M+P 
Sbjct: 595  TVIGDAMANIEKNRGVTIDLETLDIDNAAVYELLSRGDTLGVFQLDSGGMQDLLKRMKPT 654

Query: 639  CIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQ 692
               DI+A ++LYRPGP+       Y +RKNG++ I  IHP ++     +L ET G+I+YQ
Sbjct: 655  GFNDIVASLALYRPGPMGVKAHEAYADRKNGRKPITPIHPELEEPLREILDETYGLIVYQ 714

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + ++  +F  G   NG SK     ++  
Sbjct: 715  EQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAEEYSKFSEGMFSNGFSKDAVDALWGT 774

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA Y FNKSHAA YA++SY TA++K +Y  E++AA +T   D  +K   +  D R  
Sbjct: 775  IEPFASYAFNKSHAAGYALVSYWTAYLKANYTAEYMAALLTSVGDKKDKSAIYLADCRHL 834

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSR 871
             I ++ P +N    +F    + I Y LAA++ VG      I E       F S  D+  +
Sbjct: 835  GISVLQPDINESEENFMAVGSDIRYGLAAVRNVGVEVVESIKETRRTKGAFTSFSDYLDK 894

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            ++    N+R+ ESL+ AGA D  G+ R  L+   ++        +K       ++FA   
Sbjct: 895  IELLACNKRITESLIKAGAFDSLGHPRKGLMLVQEDAVDSVLTTKKAADKGQFDLFASFA 954

Query: 932  GTFSDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
            G    +  +          +       E+ +LG Y SGHPLD Y+  +         + +
Sbjct: 955  GEDGAEQAVFTIDVPDDEWDRKHTLALEREMLGLYVSGHPLDGYEEAIDAQTNTALTDIL 1014

Query: 988  --ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
                  G  + +  ++ S  ++ ++K GS    VT  +    + E   F
Sbjct: 1015 SGEMRDGAEVTIGGLISSVDRRFSKKDGSPWAIVTIEDHHGAQVEVLMF 1063


>gi|296117566|ref|ZP_06836150.1| DNA polymerase III, alpha subunit [Corynebacterium ammoniagenes DSM
            20306]
 gi|295969297|gb|EFG82538.1| DNA polymerase III, alpha subunit [Corynebacterium ammoniagenes DSM
            20306]
          Length = 1192

 Score =  939 bits (2427), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/1073 (29%), Positives = 538/1073 (50%), Gaps = 52/1073 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+ SFVHL  H+ +S+L+G   ++ + ++++  + PA+ +TD  N+F +  F ++   
Sbjct: 4    MAKNSSFVHLHNHTEFSMLDGMAKVDLLAEEVSRQEMPAVGMTDHGNMFGSDAFYRRMTK 63

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQ----------GKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIG +  +          Q            +         +L   A G   L +
Sbjct: 64   AGVKPIIGIEAYMAPGSRFNKKRQLWGTPDQKRDDVSASGAYLHQTMLAENATGLSNLFK 123

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   +G+I  TG  SG +           A +    +
Sbjct: 124  LSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFDEALEAAAMW 182

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++  D  ++ L  H    ++     ++++    +LP + TN+  ++ E    +H+ ++
Sbjct: 183  QDIYGRDNYFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPSHEAML 242

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAP 290
             V     +   DR +     +Y+K   +M  ++   +P+  +NT+ IA R      +   
Sbjct: 243  CVQTGKTLMDPDRFKFDGTGYYIKTAEQMRELWDHMVPDGCDNTLWIAERVESYDSLWEE 302

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +              L ++ + GL+ R            ++Y +R ++E++VI  
Sbjct: 303  HSHDRMPVADVPEGHTPTTWLTHEVMEGLKDRF-----DGKEVPEEYIKRAEYEISVIDM 357

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLNP
Sbjct: 358  KGYPSYFLIVAEIIKHARSIGIWVGPGRGSAAGALVAYALTITNIDPIEHDLLFERFLNP 417

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468
            +R S PD DIDF   RR E+I+Y   ++G +++AQ+ITFG+++ K A++D  +    Q  
Sbjct: 418  ERPSAPDIDIDFDDRRRGEMIQYAAERWGEDKIAQVITFGTVKTKQAIKDAAKVHFGQPG 477

Query: 469  YSQVDRL---------CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            +   DR+          K IP         +  ++ +  R+    DP V ++ + ++ LE
Sbjct: 478  FQMADRINGALPPAVMAKDIPLAGITDPEHERYSEAAEVRQMVETDPDVKKIYDTARGLE 537

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++    L   +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 538  GVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 597

Query: 580  TLLQKSLDFLAQ-RGVKVDLSLIPFDDH---ETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            T++  +L  + + RG+ ++L  +  DD    + Y LL++  TLG+FQL+S GM++ L+ M
Sbjct: 598  TVIGDALANIKKNRGIDLNLEDLHADDPQVSKVYDLLSSGDTLGVFQLDSGGMQELLKRM 657

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVI 689
            +P   +DI+A ++LYRPGP+  +    Y +RKNG+++I  IHP ++     +L ET G+I
Sbjct: 658  KPTGFKDIVASLALYRPGPMGVNAHWNYADRKNGRQEITPIHPELEEPLSEILGETYGLI 717

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQ+M+I+Q L+ Y+  EAD  R+AMGKK  E + ++ E+F  G   NG SK     +
Sbjct: 718  VYQEQIMRISQKLANYTAGEADGFRKAMGKKKPEVLAQEYEKFSQGMFTNGYSKGAVDAL 777

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +  +  FA Y FNKSHAA Y ++S+ TA++K ++  E++AA +T   D  +K   +  D 
Sbjct: 778  WGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYFAPEYMAALLTSVADKKDKSAIYLADC 837

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDF 868
            R   I+++PP VN    DF+   + I + + AI+ VG+     I+EA  D   F S  D+
Sbjct: 838  RHLGIKVLPPDVNESAEDFEAVGDDIRFGMGAIRNVGSEVVESIIEARRDKGAFKSFSDY 897

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              ++      +RV ESL+ AGA D  G+ R  L+   ++     Q  +K       ++FA
Sbjct: 898  LDKISLVACTKRVTESLIKAGAFDSLGHPRKGLMLIQEDAVDSVQSTKKAADKGQFDLFA 957

Query: 929  HEKGTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
               G   +      I + + S  +       E+ +LG Y SGHPLD ++  L        
Sbjct: 958  SFGGDDGESVSSFAIDIPEES-WDRKHELALEREMLGLYVSGHPLDGFEDALAAQTDTAL 1016

Query: 984  EESVA--TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
               VA     G  + +  ++    ++ +++ GS    VT  +    + E   F
Sbjct: 1017 TTVVAGEMRNGQEMVIGGIISGVDRRFSKRDGSPWAIVTIEDHHGAQVEILVF 1069


>gi|28572411|ref|NP_789191.1| DNA polymerase III subunit alpha [Tropheryma whipplei TW08/27]
 gi|28410542|emb|CAD66928.1| DNA polymerase III alpha subunit [Tropheryma whipplei TW08/27]
          Length = 1164

 Score =  938 bits (2425), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1056 (36%), Positives = 555/1056 (52%), Gaps = 45/1056 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL VH+ YS+L+GA    +++ K A D+ PAIAITD  N F A +F + A  
Sbjct: 1    MRDYMSFVHLHVHTDYSMLDGAARTEDLMRKAAEDKMPAIAITDHGNTFGAFDFWKTAKT 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQ---------GKTPFPTVPSIVLLVSTAEGYQRLIEL 115
              I PIIG +  +    N K   +           +       + LL    EG   L +L
Sbjct: 61   YDINPIIGMEAYLTPGTNRKEKVRKFFASGGPDDVSAGGAYTHLTLLSQNNEGMHNLFKL 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S   +        RI +  L +  + GLI  TG  SG I           A +     +
Sbjct: 121  SSLASIEG-YYFKPRIDIELLNQY-SNGLIATTGCPSGEIQTRLRLGQYSEARQAAAQMR 178

Query: 176  KLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +F  +  Y  +  H    ++     +++LA    LPL+ATN+  +++ ED  +H  L+ 
Sbjct: 179  DIFGPENYYCEVMDHNLEIEKAVMPDLLRLAGDLGLPLLATNDLHYVNSEDSASHAALLC 238

Query: 234  VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            V   + ++  +R +   D  YLK+ SEM  +F DLPEA +NT+ +A RC          +
Sbjct: 239  VQSGSTINDPNRFKFDSDEFYLKSSSEMRILFEDLPEACDNTLLVAERCHINFDTQRSFM 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            PRF   E +     E +   ++   G+  R   G   +        ++ ++E+ V+    
Sbjct: 299  PRFSVPEGE----TENSWFASEVKRGIASRYPNGPSRR------VIEQAEYEIRVVQEAG 348

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            ++GYFLIVADFI WAK N I VGPGRGSGA S+ AYA+ ITD+DPL   L+FERFLNP R
Sbjct: 349  YAGYFLIVADFINWAKLNGIRVGPGRGSGAASMAAYAMRITDLDPLEHGLIFERFLNPAR 408

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFDIDF + RR EVI YV  KYG + VAQI+TF +++AK AL+D  R L  PYS  
Sbjct: 409  ISMPDFDIDFDERRRGEVIDYVTKKYGSDHVAQIVTFATIKAKQALKDSARVLSYPYSFG 468

Query: 473  DRLCKLIPND-PAHPVSLQAIAD--------DSRFREARLADPSVDRLLEISQKLEGLYR 523
            +RL K +P       + L+AI D         S  R+   +D  + ++   ++ LE L R
Sbjct: 469  ERLTKAMPPAVMGREIPLRAIFDTTHSRHREASEVRQMIESDYEMQQIFNTAKGLENLKR 528

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
              + HAAG+++ D P+  ++P+ +       VTQF+    E  GL+K DFLGL+ LT++ 
Sbjct: 529  QWAVHAAGVIMSDAPIIDIIPIMKRESDGHIVTQFDYASCESLGLVKMDFLGLRNLTIID 588

Query: 584  KSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             +L  + Q +  KVDL  +P DD E Y LL    TLG+FQL+S  +RQ LE MQPD  +D
Sbjct: 589  DALANIRQNKNTKVDLENLPLDDPEVYKLLRRADTLGVFQLDSGPIRQLLELMQPDSFDD 648

Query: 643  IIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVM 696
            I A ++LYRPGP+   +   Y  RKN K++I  IHP +      +L  T G+I+YQEQV+
Sbjct: 649  ISAAIALYRPGPMGARSHTNYALRKNRKQEIDHIHPELTKDLSVLLSSTYGLIVYQEQVI 708

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
             IAQ L+G++L EADVLR AMGKK K+E+D+Q  +F +G  K G S      ++ +L  F
Sbjct: 709  GIAQKLAGFTLEEADVLRWAMGKKKKDELDRQYNKFANGMRKAGYSDGATEALWNVLLPF 768

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            +DY FNK+HA AY +ISY TA++K HYP E++AA +T    + +K+  + Q+ R   I++
Sbjct: 769  SDYAFNKAHATAYGLISYWTAYLKAHYPTEYMAALLTSVETSRDKLGLYLQECRHMCIKV 828

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            + P +N     F      I + L AIK VG      I+E   D PF SL DF  R+    
Sbjct: 829  LLPDINVSRSGFTPSGENILFGLGAIKNVGANLIDDILEVREDGPFVSLIDFVQRMPHSV 888

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            LNRR + SL+ AGA D    +R  L+    ++ +  Q   +       +    E   FS 
Sbjct: 889  LNRRSVMSLIQAGAFDSIHPNRRSLMDIHRSVLENCQANARRSDVSLLDGLLDEYEGFSP 948

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
                      N+  R + E+ +LG Y S HPLD  +  L K       E ++    + IR
Sbjct: 949  ----PDIPDWNNRERLKYEREMLGMYVSSHPLDGLEDSLLKFRDCSIAECISRKPQDVIR 1004

Query: 997  LAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANF 1031
            +A ++ S + K  R+ G R       + + E +   
Sbjct: 1005 VAGLITSVEHKVARRTGMRYAHAILEDTSGEIQIML 1040


>gi|319440285|ref|ZP_07989441.1| DNA polymerase III subunit alpha [Corynebacterium variabile DSM
            44702]
          Length = 1188

 Score =  938 bits (2425), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/1073 (29%), Positives = 522/1073 (48%), Gaps = 53/1073 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++KS SFVHL  H+ YS+L+G   ++ +  +++    PA+ +TD  N+F +  F     A
Sbjct: 1    MKKS-SFVHLHNHTEYSMLDGMAKVDLLAQEVSRQGMPAVGMTDHGNMFGSDAFYHAMTA 59

Query: 65   AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            A I+PIIG +  +     L          +                ++   A G   L  
Sbjct: 60   ADIKPIIGIETYMAPDSRLIKDRIKWGQPEQKRDDVAGGGYYLHQTMMAENATGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +           A +    +
Sbjct: 120  LSSLASYEGQVSKYPRMDAEIVAE-HAEGIIATTGCPSGDVQTRLRLGQFDKALEAAAMW 178

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++  D  ++ L  H    ++     ++++    ELP + TN+  ++ ++  + H+V++
Sbjct: 179  QDIYGKDNYFLELMDHGLDIEKRVRDDLLEIGKRLELPPLVTNDCHYVLQKQAKPHEVML 238

Query: 233  AVAHSTVVSQK------DRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFI 284
             V     + +        R   + D Y    +EM+  + D  +P+  +NT+ IA R    
Sbjct: 239  CVQTGATLEEPTLDEGGKRFAFSGDGYYIKPAEMLREYWDPIVPDGCDNTLWIAERVQDY 298

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             ++        + K          + L ++   GL  R   G +      Q+Y  R  +E
Sbjct: 299  GELWEEHTHDRMPKYDVPEGHTPTSWLTSEVHDGLIERFNGGEV-----PQEYLDRAKYE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            ++VI    +  YFL+VAD I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   L+F
Sbjct: 354  IDVIDMKGYPSYFLVVADLIKHARSIGISVGPGRGSAAGALVAYALTITNIDPIEHGLMF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R S PD DIDF  DRR E+IRY    +G ++VAQ+ITFG+++ K A++D  RA
Sbjct: 414  ERFLNPERPSAPDIDIDFADDRRSEMIRYAAENWGEDKVAQVITFGTVKTKQAIKDASRA 473

Query: 465  L--QMPYSQVDRLCKLIPN-DPAHPVSLQAIADDS--------RFREARLADPSVDRLLE 513
               Q  +   DR+ K +P    A  + L  I D            R     DP V  + +
Sbjct: 474  HHGQPGFQIADRITKALPPAQAAKDIPLSGIMDPEHPRYGEAAEIRTLIETDPVVKEIYD 533

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             +  LEG+ R A  HA  +++   PL   +PM++       +T +     E  GL+K DF
Sbjct: 534  DALGLEGVVRQAGVHACAVIMASVPLMDHIPMWKRPADGAYITGWPYPACEAIGLLKMDF 593

Query: 574  LGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL+ LT++   +  + + RG   DL  +  DD  +Y LL    TLGIFQL+S GM++ L
Sbjct: 594  LGLRNLTVIADCIKNIKRNRGEDFDLENLETDDPASYELLARGDTLGIFQLDSGGMQELL 653

Query: 633  EGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLI----DPMLKETQ 686
            + M+P    DI+A ++LYRPGP+       Y +RKNG++ I  IHP +      +L+ET 
Sbjct: 654  KRMKPTGFNDIVASLALYRPGPMGVGAHWDYADRKNGRKPIEPIHPELAESIKDILEETY 713

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+I+YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + K+  +F +G   NG S    
Sbjct: 714  GLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAKEFGKFSAGMKSNGYSDEAI 773

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++ +  FA Y FNKSHAA Y ++S+ TA++K HY  E++AA +T   D  +K   + 
Sbjct: 774  KALWDTVLPFAGYAFNKSHAAGYGLVSFWTAYLKEHYTAEYMAALLTSVADKKDKSAIYL 833

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSL 865
             D R   ++++ P VN     F+     I + L A++ VG      I++A  +   F   
Sbjct: 834  ADCRHLGVKVLSPDVNESAYTFQSVGEDIRFGLGAVRNVGEDVVDSIVKAREEKGKFTDF 893

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             D+  ++D+   N+RV +SL+ AGA D  G+ R  L    ++        +K       +
Sbjct: 894  SDYLDKIDATACNKRVTDSLIKAGAFDSLGHPRKGLNLIHEDAVDAVTSTKKAAAKGQFD 953

Query: 926  IFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
            +FA      +    K+ +      +       E+ +LG Y SGHPLD ++  L       
Sbjct: 954  LFAGLSEEETGDAFKVEVPD-QEWDRKHALTLEKEMLGLYVSGHPLDGFEASLDAQIDTP 1012

Query: 983  YEESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP-AKEYEANFF 1032
                +         +++  ++ S  ++  +KG+    VT  +  + + E   F
Sbjct: 1013 LTTVLSGELPDRKTVKVGGIISSVDRRVDKKGNPWAIVTIEDQHSAQAELLVF 1065


>gi|302531855|ref|ZP_07284197.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4]
 gi|302440750|gb|EFL12566.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4]
          Length = 1190

 Score =  938 bits (2425), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1078 (32%), Positives = 551/1078 (51%), Gaps = 65/1078 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL VH+ YS+L+GA  +  +L +     QPAIA+TD   + +A EF + A  + +
Sbjct: 2    SDSFVHLHVHTEYSMLDGAAKVKPLLAEAERLGQPAIAMTDHGTMSAAAEFYRVAKNSPV 61

Query: 68   QPIIGCQLDIDMQDNLKMT-----------------NQGKTPFPTVPSIVLLVSTAEGYQ 110
            +PIIG +  +  +                           +   +   + +    A+G +
Sbjct: 62   KPIIGIEAYVAPESRFHKKPVFWGQASQRGSDEFGEGGDVSGSGSYTHMTMWAENADGLR 121

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L+++ S         +  R+    + E    G++  TG  SG +         + A + 
Sbjct: 122  NLLKMSSLASFEG-YYRKPRMDRDLIAENHR-GIMATTGCPSGEVQTRLRLGQREQAIQA 179

Query: 171  LLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
               +K +F  D  ++ L  H    +R     ++++    +L  VATN+S +++++  EAH
Sbjct: 180  ASDYKDIFGADNFFLELMDHGLPIERSVREGLLEIGKLLDLKPVATNDSHYVTQDQAEAH 239

Query: 229  DVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQ 286
              L+ V     +S   R +   D +YLK+   M   +  ++P A +NT+ IA R      
Sbjct: 240  SALLCVQAGKTLSDPTRFKFDGDGYYLKSAEAMREYWDKEVPGAAQNTLLIAERVQSYAD 299

Query: 287  VH--APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            V      +PRF   E     K E++ LR +    +  R   G        Q+Y+ R+D E
Sbjct: 300  VFDFHDRMPRFPVPEG----KTEDDLLREEVEKFVPTRFPDGP------TQEYKDRIDRE 349

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L ++A+M FS YFL+V D ++WAK+  I VGPGRGS  GS+ AY L ITD+DP+  SLLF
Sbjct: 350  LGIMAKMGFSAYFLVVGDLVRWAKEQRIRVGPGRGSATGSLVAYILHITDLDPIEHSLLF 409

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+S PD D+DF   RR EV++Y  +K+G E VAQ+ITFG+++ KAA++D  R 
Sbjct: 410  ERFLNPERVSPPDIDLDFDDRRRGEVLQYTIDKWGAENVAQVITFGTIKTKAAIKDAARV 469

Query: 465  L--QMPYSQVDRLCKLIPNDPA---------HPVSLQAIADDSRFREARLADPSVDRLLE 513
               Q  +S  D++ K +P   A              +   + S  R     DP V ++++
Sbjct: 470  HFGQPGFSIADKITKALPPPIAAQDIPLSGIFDPKHERYGEASEVRTLTETDPEVKQIMD 529

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             ++ LEGL R+A  HA  +++   PL  ++P++R       +T F+    E  GL+K DF
Sbjct: 530  TARGLEGLIRNAGVHACAVILSSEPLLDVIPLWRR-DDGATITGFDYPSCEDMGLLKMDF 588

Query: 574  LGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL TLT+++ ++  +      ++DL+ +  DD +TY LL+   TLG+FQL+ + MR  L
Sbjct: 589  LGLSTLTIIEDTIQAVKDNHGREIDLATLALDDKKTYELLSRGDTLGVFQLDGAAMRSLL 648

Query: 633  EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQ 686
              M P    DI A+++LYRPGP+  +  + Y  R NG++KI  IHP +    +P+L ET 
Sbjct: 649  RAMAPTHFGDIAAVLALYRPGPMAANAHIDYAERSNGRQKISPIHPELKDALEPILGETY 708

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
             +++YQEQVM IAQ L+GY+L  AD+LRRAMGKK KE ++K+ E+F  G    G S    
Sbjct: 709  HLLVYQEQVMAIAQQLAGYTLGGADLLRRAMGKKKKEIIEKEFEKFREGMLGKGFSAEAC 768

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++  FA Y FNKSH A Y ++SY TA++K +YP EF+AA +T    N +K   + 
Sbjct: 769  QTLWDVMLPFAGYAFNKSHTAGYGLVSYWTAYLKANYPAEFMAAQLTSNSGNKDKSAIYL 828

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSL 865
             + R+  I+++PP VN   + F+   + I + L A++ VGT     I++   +   +   
Sbjct: 829  AECRRMGIKVLPPCVNESNLRFRAVGSDIRFGLGAVRNVGTNVVDSIVKTRQEKGLYTGF 888

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DF  + +    N+RV ESL+ AGA D FG +R+ ++   +   +    +++       +
Sbjct: 889  VDFLDKSELPVCNKRVTESLIKAGAFDAFGLTRLSMIAVHEEAVEAVVPLKRQEAMGQFD 948

Query: 926  IFAHEKGTFSDKITLEKFS---------VENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            +F       S ++                         E+ +LG Y S HPLD  + ILR
Sbjct: 949  LFGTGGDESSAEVAAASSPLAHVKFGPDEYPRKQLLAYERDMLGLYVSAHPLDGAERILR 1008

Query: 977  KMGIKGYEESV-ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +   K     V    +   I L+ M+ S  ++  +KG     V   +     E  FFP
Sbjct: 1009 QHAPKPIAVLVDDAPKEGEIVLSGMISSVDRRVNKKGEPWAIVVVEDLDASMEVLFFP 1066


>gi|28493477|ref|NP_787638.1| DNA polymerase III subunit alpha [Tropheryma whipplei str. Twist]
 gi|28476519|gb|AAO44607.1| DNA polymerase III alpha chain [Tropheryma whipplei str. Twist]
          Length = 1164

 Score =  938 bits (2424), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1056 (35%), Positives = 555/1056 (52%), Gaps = 45/1056 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL VH+ YS+L+GA    +++ K A D+ PAIAITD  N F A +F + A  
Sbjct: 1    MRDYMSFVHLHVHTDYSMLDGAARTEDLMRKAAEDKMPAIAITDHGNTFGAFDFWKTAKT 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQ---------GKTPFPTVPSIVLLVSTAEGYQRLIEL 115
              I PIIG +  +    N K   +           +       + LL    EG   L +L
Sbjct: 61   YDINPIIGMEAYLTPGTNRKEKVRKFFASGGPDDVSAGGAYTHLTLLSQNNEGMHNLFKL 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S   +        RI +  L +  + GLI  TG  SG I           A +     +
Sbjct: 121  SSLASIEG-YYFKPRIDIELLNQY-SNGLIATTGCPSGEIQTRLRLGQYSEARQAAAQMR 178

Query: 176  KLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +F  +  Y  +  H    ++     +++LA    LPL+ATN+  +++ ED  +H  L+ 
Sbjct: 179  DIFGPENYYCEVMDHNLEIEKAVMPDLLRLAGDLGLPLLATNDLHYVNSEDSASHAALLC 238

Query: 234  VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            V   + ++  +R +   D  YLK+ SEM  +F DLPEA +NT+ +A RC          +
Sbjct: 239  VQSGSTINDPNRFKFDSDEFYLKSSSEMRILFEDLPEACDNTLLVAERCHINFDTQRSFM 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            PRF   E +     E +   ++   G+  R   G   +        ++ ++E+ V+    
Sbjct: 299  PRFSVPEGE----TENSWFASEVKRGIASRYPNGPSRR------VIEQAEYEIRVVQEAG 348

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            ++GYFLIVADFI WAK N I VGPGRGSGA S+ AYA+ ITD+DPL   L+FERFLNP R
Sbjct: 349  YAGYFLIVADFINWAKLNGIRVGPGRGSGAASMAAYAMRITDLDPLEHGLIFERFLNPAR 408

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFDIDF + RR EVI YV  KYG + VAQI+TF +++AK AL+D  R L  PYS  
Sbjct: 409  ISMPDFDIDFDERRRGEVIDYVTKKYGSDHVAQIVTFATIKAKQALKDSARVLSYPYSFG 468

Query: 473  DRLCKLIPND-PAHPVSLQAIAD--------DSRFREARLADPSVDRLLEISQKLEGLYR 523
            +RL K +P       + L+AI D         S  R+   +D  + ++   ++ LE L R
Sbjct: 469  ERLTKAMPPAVMGREIPLRAIFDTTHSRHREASEVRQMIESDYEMQQIFNTAKGLENLKR 528

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
              + HAAG+++ D P+  ++P+ +       VTQF+    E  GL+K DFLGL+ LT++ 
Sbjct: 529  QWAVHAAGVIMSDAPIIDIIPIMKRESDGHIVTQFDYASCESLGLVKMDFLGLRNLTIID 588

Query: 584  KSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             +L  + Q +  KVDL  +P DD E Y LL    TLG+FQL+S  +RQ LE MQPD  +D
Sbjct: 589  DALANIRQNKNTKVDLENLPLDDPEVYKLLRRADTLGVFQLDSGPIRQLLELMQPDSFDD 648

Query: 643  IIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVM 696
            I A ++LYRPGP+   +   Y  RKN K++I  IHP +      +L  T G+I+YQEQV+
Sbjct: 649  ISAAIALYRPGPMGARSHTNYALRKNRKQEIDHIHPELTKDLSVLLSSTYGLIVYQEQVI 708

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
             IAQ L+G++L EADVLR AMGKK K+E+D+Q  +F +G  K G S      ++ +L  F
Sbjct: 709  GIAQKLAGFTLEEADVLRWAMGKKKKDELDRQYNKFANGMRKAGYSDGATEALWNVLLPF 768

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            +DY FNK+HA AY +ISY TA++K HYP E++AA +T    + +K+  + Q+ R   I++
Sbjct: 769  SDYAFNKAHATAYGLISYWTAYLKAHYPTEYMAALLTSVETSRDKLGLYLQECRHMCIKV 828

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            + P +N     F      I + L AIK VG      I+E   D PF SL DF  R+    
Sbjct: 829  LLPDINVSRSGFTPSGENILFGLGAIKNVGANLIDDILEVREDGPFVSLIDFVQRMPHSV 888

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            LNRR + SL+ AGA D    +R  L+    ++ +  Q   +       +    E   FS 
Sbjct: 889  LNRRSVMSLIQAGAFDSIHPNRRSLMDIHRSVLENCQANARRSDVSLLDGLLDEYEGFSP 948

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
                      ++  R + E+ +LG Y S HPLD  +  L K       E ++    + IR
Sbjct: 949  ----PDIPDWDNRERLKYEREMLGMYVSSHPLDGLEDSLLKFRDCSIAECISRKPQDVIR 1004

Query: 997  LAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANF 1031
            +A ++ S + K  R+ G R       + + E +   
Sbjct: 1005 VAGLITSVEHKVARRTGMRYAHAILEDTSGEIQIML 1040


>gi|227833468|ref|YP_002835175.1| DNA polymerase III, alpha subunit [Corynebacterium aurimucosum ATCC
            700975]
 gi|227454484|gb|ACP33237.1| DNA polymerase III, alpha subunit [Corynebacterium aurimucosum ATCC
            700975]
          Length = 1190

 Score =  936 bits (2420), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/1074 (28%), Positives = 531/1074 (49%), Gaps = 53/1074 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+ SFVHL  H+ +S+L+G   ++ + D++     PA+ +TD  N++ +  F Q+  +
Sbjct: 1    MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVLRQGMPAVGMTDHGNMYGSNAFYQRMTS 60

Query: 65   AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIG +  +  +                    +         +L     G + L +
Sbjct: 61   AGVKPIIGIEAYLAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMLAENETGLRNLFK 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +           A +    +
Sbjct: 121  LSSLASYEGQLGKWPRMDAELIAE-HAEGIIATTGCPSGDVQTRLRLGQFNEALEAAAMW 179

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++  D  ++ L  H    ++     ++++    +LP + TN+  ++ E    +H+ ++
Sbjct: 180  QDIYGKDNFFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPSHEAML 239

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAP 290
             V         DR +     +Y+K+ ++M  ++   +PEA +NT+ IA R      +   
Sbjct: 240  CVQTGKTFMDPDRFKFDGTGYYIKSAAQMRELWDHMVPEACDNTLWIAERVQDYGAIWEE 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +            + L ++ + GL+ R   G +      Q+Y  R ++E++VI  
Sbjct: 300  HTHDRMPIADVPEGYTPTSWLTHEVMEGLKDRFNGGDV-----PQEYIDRAEYEISVIDM 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLNP
Sbjct: 355  KGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPIEHGLLFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468
            +R S PD DIDF   RR E+I Y   ++G ++VAQ+ITFG+++ K A++D  +    Q  
Sbjct: 415  ERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAKVHFGQPG 474

Query: 469  YSQVDRL---------CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            +   DR+          K IP         +  ++ +  R+    DP V ++ E ++ LE
Sbjct: 475  FQMADRINGALPPAIMAKDIPLAGIMDPEHERYSEATEVRQMIETDPDVKKIYETARGLE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++    L   +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 535  GVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 594

Query: 580  TLLQKSLDFLAQ-RGVKVDLSLIPFDDH---ETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            T++   L+ + + RG +V L  +  DD    + Y LL+   TLG+FQL+S GM++ L+ M
Sbjct: 595  TVIGDCLENIKKNRGEEVHLEDLHADDPNASKVYDLLSRGDTLGVFQLDSGGMQELLKRM 654

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVI 689
            +P   +DI+A ++LYRPGP+  +    Y +RKNG+++I  IHP ++     +L ET G+I
Sbjct: 655  KPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEILDETYGLI 714

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + +Q ++F  G   NG SK     +
Sbjct: 715  VYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMKDNGYSKEAMDAL 774

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +  +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K   +  D 
Sbjct: 775  WGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKSAIYLADC 834

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDF 868
            R   I+++ P VN     F+     I + + AI+ VG      I++       F S  D+
Sbjct: 835  RHLGIRVLSPDVNESVETFQAVGEDIRFGMGAIRNVGGEVVDSIVKTRREKGAFTSFSDY 894

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              +++    ++RV ESL+ AGA D   + R  L+   ++     Q  +K       ++FA
Sbjct: 895  LDKIELAACSKRVTESLIKAGAFDSLEHPRKGLMLIHEDAVDSVQTTKKAADKGQFDLFA 954

Query: 929  HEKGTFSDK------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
               G           I + +    +       E+ +LG Y SGHPLD ++  L       
Sbjct: 955  GFGGDDQGDSVSAFAIDIPE-ENWDRKHELALEREMLGLYVSGHPLDGFEEALNAQTDTP 1013

Query: 983  YEESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
              + +      G  + +  ++    ++ +++ GS    V+  +    + +   F
Sbjct: 1014 ITKILNGEVGNGQELVIGGIISGVDRRFSKRDGSPWAIVSIEDHNGAQVDILVF 1067


>gi|262184456|ref|ZP_06043877.1| DNA polymerase III subunit alpha [Corynebacterium aurimucosum ATCC
            700975]
          Length = 1193

 Score =  936 bits (2420), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/1075 (28%), Positives = 531/1075 (49%), Gaps = 53/1075 (4%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             + K+ SFVHL  H+ +S+L+G   ++ + D++     PA+ +TD  N++ +  F Q+  
Sbjct: 3    RMAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVLRQGMPAVGMTDHGNMYGSNAFYQRMT 62

Query: 64   AAGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
            +AG++PIIG +  +  +                    +         +L     G + L 
Sbjct: 63   SAGVKPIIGIEAYLAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMLAENETGLRNLF 122

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +L S      Q  +  R+    + E   EG+I  TG  SG +           A +    
Sbjct: 123  KLSSLASYEGQLGKWPRMDAELIAE-HAEGIIATTGCPSGDVQTRLRLGQFNEALEAAAM 181

Query: 174  FKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            ++ ++  D  ++ L  H    ++     ++++    +LP + TN+  ++ E    +H+ +
Sbjct: 182  WQDIYGKDNFFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPSHEAM 241

Query: 232  MAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHA 289
            + V         DR +     +Y+K+ ++M  ++   +PEA +NT+ IA R      +  
Sbjct: 242  LCVQTGKTFMDPDRFKFDGTGYYIKSAAQMRELWDHMVPEACDNTLWIAERVQDYGAIWE 301

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                  +            + L ++ + GL+ R   G +      Q+Y  R ++E++VI 
Sbjct: 302  EHTHDRMPIADVPEGYTPTSWLTHEVMEGLKDRFNGGDV-----PQEYIDRAEYEISVID 356

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLN
Sbjct: 357  MKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPIEHGLLFERFLN 416

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467
            P+R S PD DIDF   RR E+I Y   ++G ++VAQ+ITFG+++ K A++D  +    Q 
Sbjct: 417  PERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAKVHFGQP 476

Query: 468  PYSQVDRL---------CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
             +   DR+          K IP         +  ++ +  R+    DP V ++ E ++ L
Sbjct: 477  GFQMADRINGALPPAIMAKDIPLAGIMDPEHERYSEATEVRQMIETDPDVKKIYETARGL 536

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EG+ R A  HA  +++    L   +PM++       +T ++    E  GL+K DFLGL+ 
Sbjct: 537  EGVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRN 596

Query: 579  LTLLQKSLDFLAQ-RGVKVDLSLIPFDDH---ETYHLLTTKGTLGIFQLESSGMRQALEG 634
            LT++   L+ + + RG +V L  +  DD    + Y LL+   TLG+FQL+S GM++ L+ 
Sbjct: 597  LTVIGDCLENIKKNRGEEVHLEDLHADDPNASKVYDLLSRGDTLGVFQLDSGGMQELLKR 656

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGV 688
            M+P   +DI+A ++LYRPGP+  +    Y +RKNG+++I  IHP ++     +L ET G+
Sbjct: 657  MKPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEILDETYGL 716

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + +Q ++F  G   NG SK     
Sbjct: 717  IVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMKDNGYSKEAMDA 776

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++  +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K   +  D
Sbjct: 777  LWGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKSAIYLAD 836

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLED 867
             R   I+++ P VN     F+     I + + AI+ VG      I++       F S  D
Sbjct: 837  CRHLGIRVLSPDVNESVETFQAVGEDIRFGMGAIRNVGGEVVDSIVKTRREKGAFTSFSD 896

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            +  +++    ++RV ESL+ AGA D   + R  L+   ++     Q  +K       ++F
Sbjct: 897  YLDKIELAACSKRVTESLIKAGAFDSLEHPRKGLMLIHEDAVDSVQTTKKAADKGQFDLF 956

Query: 928  AHEKGTFSDK------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            A   G           I + +    +       E+ +LG Y SGHPLD ++  L      
Sbjct: 957  AGFGGDDQGDSVSAFAIDIPE-ENWDRKHELALEREMLGLYVSGHPLDGFEEALNAQTDT 1015

Query: 982  GYEESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
               + +      G  + +  ++    ++ +++ GS    V+  +    + +   F
Sbjct: 1016 PITKILNGEVGNGQELVIGGIISGVDRRFSKRDGSPWAIVSIEDHNGAQVDILVF 1070


>gi|319953453|ref|YP_004164720.1| DNA polymerase iii, alpha subunit [Cellulophaga algicola DSM 14237]
 gi|319422113|gb|ADV49222.1| DNA polymerase III, alpha subunit [Cellulophaga algicola DSM 14237]
          Length = 1479

 Score =  935 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1101 (31%), Positives = 555/1101 (50%), Gaps = 84/1101 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ------ 60
            ++ +F HL  H+ +S+L+  +S+  ++   A  + PA+A+TD  N+  A  F        
Sbjct: 257  ETANFSHLHNHTQFSILQSTISIPALISAAAKAKMPAVAMTDHANMMGAFHFVSGVINHN 316

Query: 61   --------------KACAAGIQPIIGCQLDIDMQDNLKMT------------NQGKTPFP 94
                          +A   G        L+   +  +++T            +  K+   
Sbjct: 317  KGVVSRNEENLIRFEATKNGTLKEGEEALEELPEPEIEITPIIGCEFQVCEDHTNKSQKD 376

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                IV+L  T +GY  L ++ S  ++  +     RI    +++   E +I+LTG   G 
Sbjct: 377  NGYQIVMLAKTKKGYLNLAKMSSIAFVSGK-YYVPRIDRKVVEQY-KEDIIVLTGNLYGE 434

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVA 213
            +           AE+ LL +K+ FG  LY+ + RH   D  R +Q ++Q A  H++ L+A
Sbjct: 435  VPSKVLNVGENQAEEALLWWKETFGADLYIEIMRHGQEDEDRANQVLIQFAKKHDVKLLA 494

Query: 214  TNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSD 266
            TNN+ ++ +E+  AHD+L+ V      +                ++Y K+  +M  +F D
Sbjct: 495  TNNTYYVDKENAHAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSSDQMKELFKD 554

Query: 267  LPEALENTVEIARRCS-FIL-------QVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
            +PEA+ N  E+  +   F L           P   +F E + D  ++ E   LR+    G
Sbjct: 555  IPEAIINIQEVVDKVETFTLARDVLLPAFDIPEEFQFAEDKLDKGKRGENKFLRHITYEG 614

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
             + R        G       +RLDFEL VI +  + GYFLIV DFI+ A+  ++ VGPGR
Sbjct: 615  AKKRY-------GEITPAIDERLDFELKVIEKTGYPGYFLIVEDFIRAARAMDVSVGPGR 667

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GS AGS  AY L IT++DP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV NKY
Sbjct: 668  GSAAGSAVAYCLWITNLDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKY 727

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN--DPAHPVSLQAIADDS 496
            G  +VAQIIT+G++ AK+A+RD  RAL +P    DR+ KLIP+       + +      S
Sbjct: 728  GANQVAQIITYGTMAAKSAIRDTARALDLPLQDSDRMAKLIPDMSKLKKIIGVDEKILKS 787

Query: 497  RFREARL-----------ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            +FR   L            D      L  +  LEG  R+   HA G++I    +++ VP+
Sbjct: 788  KFRAEDLIKINELLAISEGDGLEAETLNQAYILEGSVRNTGIHACGVIITPDDITKFVPV 847

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604
                 S++  TQF+   +E AGL+K DFLGLKTLTL++ ++  +  + GV +D    P D
Sbjct: 848  ALAKDSEMYCTQFDNSVVEDAGLLKMDFLGLKTLTLIKDTVKIVKAKHGVTLDPENFPLD 907

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY L     T+G+FQ ES GM++ +  ++P    D+IA+ +LYRPGP++ I  +  R
Sbjct: 908  DVKTYELFQRGETVGVFQYESPGMQKHMRALKPTVFADLIAMNALYRPGPMEYIPSFIAR 967

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G E+IV      +  L ET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK K  
Sbjct: 968  KHGTEEIVYDLDANEEYLAETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQKYV 1027

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +DK K +FI  AS  G +      I++    FA Y FNKSH+  YA I+YQTA+ K HYP
Sbjct: 1028 LDKMKPKFIEQASAKGHAADKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYCKAHYP 1087

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             E++AA ++  M++++++  F ++ ++  + ++ P VN     F V D   + + + A+K
Sbjct: 1088 AEYMAAVLSNNMNDIKQVTFFMEECKRMGLDVLGPDVNESYYKFAVNDAGAVRFGMGAVK 1147

Query: 844  GVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQ 900
            GVG      I+E   D   PF S+ DF  R+D +  N++  ESL  AG  D FG   R Q
Sbjct: 1148 GVGRGAVETIVEHRKDEEGPFKSVFDFAKRIDLRAANKKAFESLAVAGGFDSFGDTHRAQ 1207

Query: 901  LLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +       L+   KY    +++  +   ++F         +  +       +  +  
Sbjct: 1208 YFHAEGDGVTFLEKTIKYGAKFQESENSSQVSLFGEASDVQIPEPEVPPCEEWGTMEKLR 1267

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRK 1011
             E+ V+G Y SGHPLD +K  ++            + +I    +  A ++   Q + ++ 
Sbjct: 1268 REKEVVGIYISGHPLDDFKSEVKSFCNASLSNLNDLESIVNREVSFAGVIADVQHRVSKN 1327

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G      T  +    +E   F
Sbjct: 1328 GKGWAMFTMEDYTDTFEFRIF 1348


>gi|23308898|ref|NP_601331.2| DNA polymerase III subunit alpha [Corynebacterium glutamicum ATCC
            13032]
 gi|21324900|dbj|BAB99523.1| DNA polymerase III alpha subunit [Corynebacterium glutamicum ATCC
            13032]
          Length = 1194

 Score =  935 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/1073 (30%), Positives = 541/1073 (50%), Gaps = 51/1073 (4%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            ++ K  SFVHL  H+ +S+L+G   ++ + D++ A   PA+ ITD  N++ +  F +K  
Sbjct: 6    HMAKQSSFVHLHNHTEFSMLDGMAKIDMLADEVKAQGMPAVGITDHGNMYGSNPFYRKMT 65

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLI 113
              GI+PIIG +  +  +   K                +         +L     G + L 
Sbjct: 66   EMGIKPIIGIETYMAPESRFKKERVRWGEPHQKSDDVSGSGAYLHQTMLAENTTGLRNLF 125

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L S      Q  +  R+    + E   EG+I  TG  SG +           A +    
Sbjct: 126  YLSSMASYEGQLGKWPRMDADIIAE-HAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAM 184

Query: 174  FKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            ++ ++  D  ++ L  H    +    S+++++     LP + TN+  ++ E   +AH+ +
Sbjct: 185  WQDIYGRDNYFLELMDHGLDIETRVRSELLEIGRKLNLPPLVTNDCHYVLESQAQAHEAM 244

Query: 232  MAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHA 289
            + V     +  +DR +     +Y+K+  +M +++ D +P+  +NT+ IA R     ++  
Sbjct: 245  LCVQTGKTLHDEDRFKFGGTGYYVKSAEQMRALWDDMVPDGCDNTLWIAERVQSYDEIWE 304

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                  +              L ++ +AGLE R +   +      +DY +R ++E++VI 
Sbjct: 305  EHSHDRMPIADVPEGYTPTTWLHHEVMAGLEDRFSGQQV-----PEDYIERAEYEISVID 359

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLN
Sbjct: 360  MKGYPSYFLIVAEIIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHGLLFERFLN 419

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467
            P+R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K AL+D  R    Q 
Sbjct: 420  PERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQALKDSARVQMGQP 479

Query: 468  PYSQVDRLCK-LIPNDPAHPVSLQAIAD--DSRF------REARLADPSVDRLLEISQKL 518
             Y   DR+ K L P   A  + L  I D    RF      R+    DP V R+ + ++ L
Sbjct: 480  GYQIADRVIKELPPAIMAKDIPLSGITDPDHPRFNEAGAVRQLIETDPDVKRIYDTARGL 539

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EG+ R +  HA  +++   PL   +PM++       +T ++    E  GL+K DFLGL+ 
Sbjct: 540  EGVVRQSGVHACAVIMSSVPLLDCIPMWKRPADGALITGWDYPACEAIGLLKMDFLGLRN 599

Query: 579  LTLLQKSLDFLA--QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            LT++  +++ +   + G  +DL  +  +D ETY LL    TLG+FQL+  GM++ L+ MQ
Sbjct: 600  LTVIGDAIENIKANRDGEVLDLENLAIEDEETYKLLGRGETLGVFQLDGGGMQELLKRMQ 659

Query: 637  PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVII 690
            P    DI+A ++LYRPGP+  +    Y +RKNG++ I  IHP ++  L+E    T G+I+
Sbjct: 660  PTGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEALEEILGETYGLIV 719

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQ+M+I+Q ++ Y+  +AD  R+AMGKK  E ++K+   F  G   NG S      ++
Sbjct: 720  YQEQIMRISQKVANYTAGQADGFRKAMGKKKPEVLEKEFANFEGGMKANGYSDAAIKTLW 779

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            + +  FA Y FNKSHAA Y ++S+ TA++K HY  E++AA +T   DN +K   +  D R
Sbjct: 780  DTILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKSAIYLSDCR 839

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFC 869
               I+++ P +N   ++F      I Y L AI+ VG      I++   +   F    D+ 
Sbjct: 840  HLGIRVLSPDINESSLNFLPVGTDIRYGLGAIRNVGAEVVDSILDTRKEKGLFKDFSDYL 899

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             ++D+   N+R+ ESL+  GA D  G++R  L+   ++        +K       ++FA 
Sbjct: 900  DKIDTLPCNKRITESLIKGGAFDSLGHARKGLMLVFEDAVDSVIATKKAADKGQFDLFAA 959

Query: 930  EKGTFSD------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                 +D      +IT+      +       E+ +LG Y SGHPLD Y+  +        
Sbjct: 960  FDSDNNDDVASFFQITVPD-DEWDRKHELALEREMLGLYVSGHPLDGYEDAIAAQVDTAL 1018

Query: 984  EESVA--TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
               VA     G  + +  ++    ++ ++K GS    VT  +      E   F
Sbjct: 1019 TTIVAGELKHGAEVTVGGIISGVDRRFSKKDGSPWAIVTIEDHNGASVELLVF 1071


>gi|330998876|ref|ZP_08322603.1| DNA polymerase III subunit alpha [Parasutterella excrementihominis
            YIT 11859]
 gi|329576090|gb|EGG57609.1| DNA polymerase III subunit alpha [Parasutterella excrementihominis
            YIT 11859]
          Length = 1148

 Score =  935 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1024 (37%), Positives = 599/1024 (58%), Gaps = 34/1024 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  FVHL++H+ +S+ +G L+   ++ K  A    A+AITD   +F  + F + A AAGI
Sbjct: 2    TQDFVHLRMHTEFSIKDGMLNPKKVVHKAIASGMKALAITDATAMFGDVIFYKAASAAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+G    I    N                ++ L    +GY  L +L+SR +L +Q K 
Sbjct: 62   KPILGADCSITNHYN----------RDDYLRLLFLARNHQGYLTLCDLLSRAWLTNQYKD 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               + L W+     +GLI+L+G ++G I +A    SS  AE+      + F    ++ LQ
Sbjct: 112  RGEVDLDWITPEMADGLIVLSGFNTGAIGKAILNGSSSAAEQEARRLSQKFP-HFFMELQ 170

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R  D    ++ V+LA    LP+VAT    F + ED+E H+  +A+A    ++ K RP
Sbjct: 171  RVGRPNDEMLIAESVKLAKKLGLPVVATQPIQFENPEDFEFHEARVAIADGFTLANKARP 230

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  TP  Y + + EM  +F D+P A+EN+VEIA+RC+  +++  P LP F   +   ++ 
Sbjct: 231  RIYTPQQYFRTKEEMCELFKDIPSAIENSVEIAKRCNVTIKLGKPQLPIFPTPDGMSLK- 289

Query: 306  EEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               + +   A  GL+ RL         +      Y++RL+ E+ +I  M F GYFLIV D
Sbjct: 290  ---DYMAQLAREGLDRRLKVLYPDEKKREAAFPRYKERLEREIKIIQDMDFPGYFLIVQD 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FINWAKTHGCPVGPGRGSGAGSLVAYSLGITDLDPLAYDLLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ+ R  VI YV++KYG E V+QI TFG++ AK  ++DVGR L M YS+ DRL ++IP  
Sbjct: 407  CQNNRGRVIEYVKSKYGEESVSQIATFGTMGAKGVIKDVGRVLDMSYSEADRLSRMIPTR 466

Query: 483  PAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P H  +L+ A++++ +FR     +P   +L+E + KLEG  R    HA G++I    L  
Sbjct: 467  PGHNTTLEEALSEEPQFRAEVRNNPQARKLIEYALKLEGTTRSLGIHAGGVLIAPGKLID 526

Query: 542  LVPMYRDVR-SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
              P+Y      +  ++ ++ K +E  GL+KFDFLGL TLT+++++LD++ +   V+ D+ 
Sbjct: 527  FCPLYAAGMLPENVISMYDKKDVEAVGLVKFDFLGLTTLTIIERALDYIEKNIGVRPDIE 586

Query: 600  LIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             +  DD +TY  +  T  T+ +FQ ES GM + L   +P  + D+IAL +LYRPGP+D I
Sbjct: 587  HMECDDEDTYKKIFQTGDTVAVFQFESPGMHKLLIDAKPTQLSDLIALNALYRPGPMDLI 646

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + + + G++K     P + P+L++T G+++YQEQVM +AQ + GYSL  AD+LRRAMG
Sbjct: 647  PDFLDIRAGRKKAEYADPRLIPILEDTAGIMVYQEQVMLVAQKIGGYSLGGADILRRAMG 706

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK   EM++Q + FI GA+KNG+S+ +A ++FEL+ KFA YGFNKSHAAAY+ ++Y+T W
Sbjct: 707  KKDVAEMERQSKVFIEGAAKNGVSEEVAAHLFELMRKFAGYGFNKSHAAAYSYVAYKTGW 766

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYY 837
            +K +YP EFLA+S++  M + EK  K   DA++ +++++ P +N    ++       I  
Sbjct: 767  LKNYYPAEFLASSLSEVMTDPEKSLKILMDAKRHSVKLLGPDINESEFNYTSPKTMEIRM 826

Query: 838  SLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L A+KGVG+  A  I  E   + PF    D   RV S+ + +++++    AG  D    
Sbjct: 827  GLGALKGVGSAPAEAIKAEREQNGPFKDPFDLVKRVGSQLITKKIIQVFAMAGVFDSIEP 886

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R +  ++ D + + AQ  E  +     ++F  E    S+++ +++ +  +   R E EQ
Sbjct: 887  NRRKWFENADVVVQSAQ--ENEKAADQFSLFGEEP---SNEVPIKEVAPWSDRTRMEKEQ 941

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             VLGFYFSGHPL+ Y+  L++           +       +A M +  +Q++ + GS   
Sbjct: 942  YVLGFYFSGHPLEAYQSELKR-NFGALVAGTESENPGEYLVAGMYLGCEQRRGKDGSP-- 998

Query: 1017 WVTF 1020
            +VT 
Sbjct: 999  FVTL 1002


>gi|224373354|ref|YP_002607726.1| DNA polymerase III subunit alpha [Nautilia profundicola AmH]
 gi|223588342|gb|ACM92078.1| DNA polymerase III alpha subunit [Nautilia profundicola AmH]
          Length = 1132

 Score =  935 bits (2417), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1049 (36%), Positives = 592/1049 (56%), Gaps = 52/1049 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
                +HS YSLL   + + ++  K       A+AIT+ +N+FSA+EF +   A  I+PII
Sbjct: 2    TPFHIHSDYSLLHSTIRIKDLTKKAKEYGFNALAITELDNMFSAIEFYESCRANEIKPII 61

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +                  +  ++L+     GY  L+ L S  YL +       +
Sbjct: 62   GSDVSV-------------IRDGNIHRLILIAKNKTGYDNLMYLSSISYLYNMRGDKPYL 108

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRA--------FFFN--SSQVAEKRLLTFKKLFGDR 181
                + +   EGL  +                           + A++ L  +++   + 
Sbjct: 109  PFEEIVK-NKEGLCFILPILESETGFHLNIFNENNILKGAAGYEKAKEILEIYRQ-NLNE 166

Query: 182  LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            +Y+ + R    +R  E  +++L+     PL+A++N  FL++ DY   D L  + ++    
Sbjct: 167  VYLEITRDSKEERLIEDDLIKLSNETGTPLLASSNIFFLNKLDYIYKDALECIENNKQFD 226

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF------ 295
               R     ++Y +++ E   IF DLPEA+ENT ++A   +  + +  P  P F      
Sbjct: 227  DLHRRPKVKENYFRSKEEFEEIFKDLPEAVENTDKLAESINLEIPLGNPTPPTFKFTKDY 286

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
              +E  DI  + E     K   GLE RL           ++YR+RLD+E+++I RMKF G
Sbjct: 287  AAEEGLDIDNDVE-YFEYKCKEGLEERLKHIP---ENLHEEYRKRLDYEIDIIKRMKFPG 342

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            Y LIV DF++ AKK  IPVGPGRGS AG++ AY+L IT+IDPLR+ LLFERFLNP+R+SM
Sbjct: 343  YMLIVWDFVREAKKRKIPVGPGRGSAAGALVAYSLQITNIDPLRYGLLFERFLNPERVSM 402

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DFCQ+RR E+I YV+ KYG   VAQ+ITFGSL AK  LRDV R   + YS+ DR 
Sbjct: 403  PDIDMDFCQERRGEIIEYVREKYGKVNVAQVITFGSLLAKGVLRDVARIFGIDYSEADRF 462

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KLIP+     +  +A   + +  E    DP  +RL    + LEGL R+   HAAG+VI 
Sbjct: 463  VKLIPDQLGITLE-KAKELEPKIVEITEEDPLYNRLYSFGEHLEGLKRNTGMHAAGVVIS 521

Query: 536  DRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRG 593
            D  L +  P+YR D   D  VTQ+++ ++E   LIKFDFLGLKTLT++ +++  +   + 
Sbjct: 522  DEELWKKSPLYRQDEHDDTIVTQYSLNYLEPVDLIKFDFLGLKTLTVIDRAVKNVKFNKN 581

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              +++ L+  DD + + L+ +  TLG+FQ+ES GM+   + ++P   EDIIA+++LYRPG
Sbjct: 582  EDINIDLLTLDDPKVFELIQSGHTLGLFQIESDGMQDLAKRLKPTNFEDIIAMLALYRPG 641

Query: 654  PIDNIV--VYNNRKNGKEKIVSIHP----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            P+D+ +   Y +RK+G++ +         ++ P+L+ T GVI+YQEQVMQI Q + G+SL
Sbjct: 642  PMDSGMLDDYIDRKHGRKPVSYFFDEFEEVLKPILEPTYGVIVYQEQVMQIVQAIGGFSL 701

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             E+D++RRAMGKK  + M K  E F   A + G S   A ++FEL+ KFA YGFNKSH+A
Sbjct: 702  GESDIIRRAMGKKKFDLMKKYAEEFAQRAQQRGFSYDNAKSLFELIEKFAGYGFNKSHSA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA+I+YQTA++KT+YP EFL+A +T E +N +KI K+ ++A+   I+++PP+VN    +
Sbjct: 762  AYAMITYQTAYLKTYYPTEFLSALLTYEAENTDKIAKYIEEAKVLGIEVLPPNVNKSNAE 821

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            F   +++I + L+AIKGVG+     I+   A++P++SLEDF  +VD+ K+N++VLE L+ 
Sbjct: 822  FTPIEDKILFGLSAIKGVGSKAIESIV---ANRPYESLEDFILKVDTSKVNKKVLEQLIK 878

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWV--EKNRTNKHENIFAHEKGTFS--DKITLEKF 943
            AGA+D FG SR  +L  ++ I ++ + V  +KN  N   ++FA  +      + + +   
Sbjct: 879  AGAMDDFGLSRKAMLSRVEEILEFKKRVEEKKNAINHEHSLFADMEENEEIDEHLDIPNT 938

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
               +     E E + LGFY S HPLD YK  ++ +      E    I          + +
Sbjct: 939  VEFDIKTLLEYEYQTLGFYVSAHPLDPYKDRMKGINYNLSSEVEEIIS-QEALFVGKIDA 997

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + + ++KG++    T  +   + +   F
Sbjct: 998  MKVRISKKGNKFAIATLMDFHGKIDVMIF 1026


>gi|213965246|ref|ZP_03393443.1| DNA polymerase III, alpha subunit [Corynebacterium amycolatum SK46]
 gi|213952098|gb|EEB63483.1| DNA polymerase III, alpha subunit [Corynebacterium amycolatum SK46]
          Length = 1185

 Score =  935 bits (2417), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/1070 (30%), Positives = 529/1070 (49%), Gaps = 50/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S SFVHL  H+ YS+L+G   ++ + D++A    PA+ +TD  N+F +  F ++  +
Sbjct: 1    MANS-SFVHLHNHTEYSMLDGMAKIDLLADEVARQGMPAVGVTDHGNMFGSNAFYRQMKS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             GI+PIIG +  +  +                    +   +     +L + A+G + L  
Sbjct: 60   KGIKPIIGIEAYMAPESRFNKKRIQWGEPHQRRDDVSGRGSYLHQTMLAANAQGLRNLFY 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +           A +    +
Sbjct: 120  LSSMASYEGQISKYPRMDAELVAERA-EGIIATTGCPSGDVQTRLRLGQFDEALQAAGMW 178

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++  +  ++ L  H    +    S+++++     LP + TN+  +++ +  +AH+ ++
Sbjct: 179  QDIYGKENYFLELMDHGLDIETRVRSELLEIGRKLNLPPLVTNDCHYVTRDQAKAHEAML 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYL-KNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAP 290
             V     ++  DR +   D Y  K+  EM + +  L P A +NT+ IA R     ++   
Sbjct: 239  CVQTGKTLNDPDRFKFDGDGYFIKSAEEMRATWDHLVPGACDNTLLIAERVEDYDELWEE 298

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 + K      +     L +  + GL  R            ++Y +R ++E+ VI  
Sbjct: 299  HPHDRMPKADVPEGETPTTWLHHNVMEGLRKRF-----EGREVPEEYIRRAEYEIEVIDG 353

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A++  I VGPGRGS AGS+ AYA  IT+IDP+   LLFERFLNP
Sbjct: 354  KGYPSYFLIVAELIRHAREVGIKVGPGRGSAAGSLVAYATWITNIDPIEHGLLFERFLNP 413

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468
            +R S PD DIDF   RRDE+IRY  +++G ++VAQ++TFG+++ K AL+D  R    Q  
Sbjct: 414  ERPSAPDIDIDFDDRRRDEMIRYAADRWGEDKVAQVVTFGTVKTKQALKDSARVQFGQPG 473

Query: 469  YSQVDRLCKLIPN-DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            Y   DR+ K +P    A  + L  I D            R+    DP V R+ E ++ LE
Sbjct: 474  YQIADRITKALPPAIMAKDIPLGGIVDPEHPRYGEAAEVRQLIETDPDVARIYETARGLE 533

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R    HA  +V+   PL   +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 534  GVVRQTGVHACAVVMASVPLMDHIPMWKRQADGAIITGWDYPACEAIGLLKMDFLGLRNL 593

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++   ++ +   RG  V L  +  DD + Y LL+   TLG+FQL+  GMR+ L+ MQP 
Sbjct: 594  TVIGDCIEHIKSNRGETVLLDDLQTDDPKVYELLSRGDTLGVFQLDGGGMRELLKRMQPT 653

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQ 692
              +DI+A ++LYRPGP+  +    Y + KNG++   +IH  +D     +L+ET G+I+YQ
Sbjct: 654  GFDDIVASLALYRPGPMGVNAHFDYADIKNGRKPYNAIHAELDEQLKEILEETHGLIVYQ 713

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQ+M+I+Q L+ Y+  +AD  R+AMGKK  E + K+   F  G  +NG SK     ++++
Sbjct: 714  EQIMKISQKLANYTAGQADGFRKAMGKKKPEVLAKEFVNFEGGMLENGYSKDAVQKLWDI 773

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA Y FNKSHAA Y ++SY TA++K +Y  E++AA +T   D+  K+  +  D R  
Sbjct: 774  ILPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVADDKNKLAIYLSDCRHL 833

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
             I+++PP VN   +DF+     I + L AI+ VG      I++   +   F S  D+  +
Sbjct: 834  GIKVLPPDVNESGMDFEPVGEDIRFGLGAIRNVGHDVVASIVKTREEKGKFTSFSDYLDK 893

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            +++   N+R+ ESL+ AGA D  G+ R  L    +         +K       ++FA   
Sbjct: 894  IETLPCNKRITESLIKAGAFDSLGHPRKGLALIHEEAIDSVLSTKKAADKGQFDLFAGFG 953

Query: 932  GTFSD------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            G          +I +      +       E+ +LG Y SGHPLD ++  L          
Sbjct: 954  GDEDTGSESIFEIRVPD-EKWDRKHELTLEREMLGLYVSGHPLDGFEESLAAQTDTALTT 1012

Query: 986  SV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK-EYEANFF 1032
             V         I +  +V S  ++  + G     +   +      E   F
Sbjct: 1013 VVGGEVANNTEITIGGIVSSVDRRVNKNGQPWAIIGIEDHNGARVEVMAF 1062


>gi|62390966|ref|YP_226368.1| DNA polymerase III subunit alpha [Corynebacterium glutamicum ATCC
            13032]
 gi|41326305|emb|CAF20467.1| PUTATIVE DNA POLYMERASE III, ALPHA CHAIN [Corynebacterium glutamicum
            ATCC 13032]
          Length = 1188

 Score =  935 bits (2416), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/1072 (30%), Positives = 540/1072 (50%), Gaps = 51/1072 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  SFVHL  H+ +S+L+G   ++ + D++ A   PA+ ITD  N++ +  F +K   
Sbjct: 1    MAKQSSFVHLHNHTEFSMLDGMAKIDMLADEVKAQGMPAVGITDHGNMYGSNPFYRKMTE 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             GI+PIIG +  +  +   K                +         +L     G + L  
Sbjct: 61   MGIKPIIGIETYMAPESRFKKERVRWGEPHQKSDDVSGSGAYLHQTMLAENTTGLRNLFY 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +           A +    +
Sbjct: 121  LSSMASYEGQLGKWPRMDADIIAE-HAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAMW 179

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++  D  ++ L  H    +    S+++++     LP + TN+  ++ E   +AH+ ++
Sbjct: 180  QDIYGRDNYFLELMDHGLDIETRVRSELLEIGRKLNLPPLVTNDCHYVLESQAQAHEAML 239

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAP 290
             V     +  +DR +     +Y+K+  +M +++ D +P+  +NT+ IA R     ++   
Sbjct: 240  CVQTGKTLHDEDRFKFGGTGYYVKSAEQMRALWDDMVPDGCDNTLWIAERVQSYDEIWEE 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +              L ++ +AGLE R +   +      +DY +R ++E++VI  
Sbjct: 300  HSHDRMPIADVPEGYTPTTWLHHEVMAGLEDRFSGQQV-----PEDYIERAEYEISVIDM 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLNP
Sbjct: 355  KGYPSYFLIVAEIIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHGLLFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468
            +R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K AL+D  R    Q  
Sbjct: 415  ERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQALKDSARVQMGQPG 474

Query: 469  YSQVDRLCK-LIPNDPAHPVSLQAIAD--DSRF------REARLADPSVDRLLEISQKLE 519
            Y   DR+ K L P   A  + L  I D    RF      R+    DP V R+ + ++ LE
Sbjct: 475  YQIADRVIKELPPAIMAKDIPLSGITDPDHPRFNEAGAVRQLIETDPDVKRIYDTARGLE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R +  HA  +++   PL   +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 535  GVVRQSGVHACAVIMSSVPLLDCIPMWKRPADGALITGWDYPACEAIGLLKMDFLGLRNL 594

Query: 580  TLLQKSLDFLA--QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            T++  +++ +   + G  +DL  +  +D ETY LL    TLG+FQL+  GM++ L+ MQP
Sbjct: 595  TVIGDAIENIKANRDGEVLDLENLAIEDEETYKLLGRGETLGVFQLDGGGMQELLKRMQP 654

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIY 691
                DI+A ++LYRPGP+  +    Y +RKNG++ I  IHP ++  L+E    T G+I+Y
Sbjct: 655  TGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEALEEILGETYGLIVY 714

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQ+M+I+Q ++ Y+  +AD  R+AMGKK  E ++K+   F  G   NG S      +++
Sbjct: 715  QEQIMRISQKVANYTAGQADGFRKAMGKKKPEVLEKEFANFEGGMKANGYSDAAIKTLWD 774

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  FA Y FNKSHAA Y ++S+ TA++K HY  E++AA +T   DN +K   +  D R 
Sbjct: 775  TILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKSAIYLSDCRH 834

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
              I+++ P +N   ++F      I Y L AI+ VG      I++   +   F    D+  
Sbjct: 835  LGIRVLSPDINESSLNFLPVGTDIRYGLGAIRNVGAEVVDSILDTRKEKGLFKDFSDYLD 894

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            ++D+   N+R+ ESL+  GA D  G++R  L+   ++        +K       ++FA  
Sbjct: 895  KIDTLPCNKRITESLIKGGAFDSLGHARKGLMLVFEDAVDSVIATKKAADKGQFDLFAAF 954

Query: 931  KGTFSD------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                +D      +IT+      +       E+ +LG Y SGHPLD Y+  +         
Sbjct: 955  DSDNNDDVASFFQITVPD-DEWDRKHELALEREMLGLYVSGHPLDGYEDAIAAQVDTALT 1013

Query: 985  ESVA--TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
              VA     G  + +  ++    ++ ++K GS    VT  +      E   F
Sbjct: 1014 TIVAGELKHGAEVTVGGIISGVDRRFSKKDGSPWAIVTIEDHNGASVELLVF 1065


>gi|303256875|ref|ZP_07342889.1| DNA polymerase III, alpha subunit [Burkholderiales bacterium 1_1_47]
 gi|302860366|gb|EFL83443.1| DNA polymerase III, alpha subunit [Burkholderiales bacterium 1_1_47]
          Length = 1148

 Score =  935 bits (2416), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1024 (37%), Positives = 598/1024 (58%), Gaps = 34/1024 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  FVHL++H+ +S+ +G L+   ++ K  A    A+AITD   +F  + F + A AAGI
Sbjct: 2    TQDFVHLRMHTEFSIKDGMLNPKKVVHKAIASGMKALAITDATAMFGDVIFYKAASAAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+G    I    N                ++ L    +GY  L +L+SR +L +Q K 
Sbjct: 62   KPILGGDCSITNHYN----------RDDYLRLLFLARNHQGYLTLCDLLSRAWLTNQYKD 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               + L W+     +GLI+L+G ++G I +A    S   AE+      + F    ++ LQ
Sbjct: 112  RGEVDLDWITPEMADGLIVLSGFNTGAIGKAILNGSLSAAEQEARRLSQKFP-HFFMELQ 170

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R  D    ++ V+LA    LP+VAT    F + ED+E H+  +A+A    ++ K RP
Sbjct: 171  RVGRPNDEMLVAESVKLAKKLGLPVVATQPIQFENSEDFEFHEARVAIADGFTLANKARP 230

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  TP  Y + + EM  +F D+P A+EN+VEIA+RC+  +++  P LP F   +   ++ 
Sbjct: 231  RIYTPQQYFRTKEEMCELFKDIPSAIENSVEIAKRCNVTIKLGKPQLPIFPTPDGMSLK- 289

Query: 306  EEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               + +   A  GL+ RL         +      Y++RL+ E+ +I  M F GYFLIV D
Sbjct: 290  ---DYMAQLAREGLDRRLKVLYPDEKKREAEFPRYKERLEREIKIIQDMDFPGYFLIVQD 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FINWAKTHGCPVGPGRGSGAGSLVAYSLGITDLDPLAYDLLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ+ R  VI YV++KYG E V+QI TFG++ AK  ++DVGR L M YS+ DRL ++IP  
Sbjct: 407  CQNNRGRVIEYVKSKYGEESVSQIATFGTMGAKGVIKDVGRVLDMSYSEADRLSRMIPTR 466

Query: 483  PAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P H  +L+ A++++ +FR     +P   +L+E + KLEG  R    HA G++I    L  
Sbjct: 467  PGHNTTLEEALSEEPQFRAEVRNNPQARKLIEYALKLEGTTRSLGIHAGGVLIAPGKLID 526

Query: 542  LVPMYRDVR-SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599
              P+Y      +  ++ ++ K +E  GL+KFDFLGL TLT+++++LD++    GV+ D+ 
Sbjct: 527  FCPLYAAGMLPENVISMYDKKDVEAVGLVKFDFLGLTTLTIIERALDYIEKNTGVRPDIE 586

Query: 600  LIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             +  DD +TY  +  T  T+ +FQ ES GM + L   +P  + D+IAL +LYRPGP+D I
Sbjct: 587  HMECDDEDTYKKIFQTGDTVAVFQFESPGMHKLLIDAKPTQLSDLIALNALYRPGPMDLI 646

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + + + G++K     P + P+L++T G+++YQEQVM +AQ + GYSL  AD+LRRAMG
Sbjct: 647  PDFLDIRAGRKKAEYADPRLIPILEDTAGIMVYQEQVMLVAQKIGGYSLGGADILRRAMG 706

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK   EM++Q + FI GA+KNG+S+ +A ++FEL+ KFA YGFNKSHAAAY+ ++Y+T W
Sbjct: 707  KKDVAEMERQSKVFIEGAAKNGVSEEVAAHLFELMRKFAGYGFNKSHAAAYSYVAYKTGW 766

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYY 837
            +K +YP EFLA+S++  M + EK  K   DA++ +++++ P +N    ++       I  
Sbjct: 767  LKNYYPAEFLASSLSEVMTDPEKSLKILMDAKRHSVKLLGPDINESEFNYTSPKTMEIRM 826

Query: 838  SLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L A+KGVG+  A  I  E   + PF    D   RV S+ + +++++    AG  D    
Sbjct: 827  GLGALKGVGSAPAEAIKAEREQNGPFKDPFDLVKRVGSQLITKKIIQVFAMAGVFDSIEP 886

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R +  ++ D + + AQ  E  +     ++F  E    S+++ +++ +  +   R E EQ
Sbjct: 887  NRRKWFENADVVVQSAQ--ENEKAADQFSLFGEEP---SNEVPIKEVAPWSDRTRMEKEQ 941

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             VLGFYFSGHPL+ Y+  L++           +       +A M +  +Q++ + GS   
Sbjct: 942  YVLGFYFSGHPLEAYQSELKR-NFGALVAGTESENPGEYLVAGMYLGCEQRRGKDGSP-- 998

Query: 1017 WVTF 1020
            +VT 
Sbjct: 999  FVTL 1002


>gi|148654277|ref|YP_001274482.1| DNA polymerase III subunit alpha [Roseiflexus sp. RS-1]
 gi|148566387|gb|ABQ88532.1| DNA polymerase III, alpha subunit [Roseiflexus sp. RS-1]
          Length = 1279

 Score =  935 bits (2416), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1060 (32%), Positives = 549/1060 (51%), Gaps = 54/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS YSLL+G  + + I  +       +IA+TD   ++  +EF   A  AGI+P
Sbjct: 3    DFVHLHVHSEYSLLDGYAATSAIAARAVELGMDSIALTDHGVMYGVMEFYASAKKAGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG +  +        T++G         ++LL     GY+ L+ L +R +L   GK   
Sbjct: 63   IIGLEAYMAPGSRRDATSRGAK---NYYHLLLLAKDEVGYRNLVRLTTRAHLDGMGKGVF 119

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               RI    L++    GLI+ +   +G + +         A +    ++ L   D  ++ 
Sbjct: 120  ARPRIDRELLEQYHD-GLIVTSACIAGEVIQRLTEKQKDQAREIAAWYRDLLGPDNYFLE 178

Query: 186  LQRHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            LQ H           ++V++     +PLV TN++ F+  ED EAH +++A+ ++  + + 
Sbjct: 179  LQLHENTPELEEINDELVRIGKELGIPLVVTNDTHFVRPEDLEAHKMILALGYNMTLKEL 238

Query: 244  DRPRVTPD--HYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKEC 300
                   D  +++ +  EM   F       LENT  IA RC+  L+     LP     E 
Sbjct: 239  CAKNYQMDATYHIMSGEEMWRRFKKYGTTPLENTRRIAERCNLTLEFGRVQLPTIDIPEG 298

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D      + LR     GL  R        G+  ++Y +RL +EL+VI +  F  Y LIV
Sbjct: 299  HDA----ASYLRLVCEEGLMRRF------NGHPPEEYVKRLAYELDVINQTGFPDYMLIV 348

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D++++A+   IP  P RGS   S+  Y L ITD+DP++  LLFERFL+P+R+ MPD DI
Sbjct: 349  WDYVKFARARGIPCLP-RGSAGASLILYCLGITDVDPVKNKLLFERFLSPERLEMPDIDI 407

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR EV+ Y+  KYG E  AQIIT+G+L AKAALRD+GR L++P ++VDR+ +LIP
Sbjct: 408  DFADSRRHEVLEYIAAKYGRENTAQIITYGTLGAKAALRDIGRVLEIPLNEVDRVARLIP 467

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              P      QA+      ++    +P + RL++ +QK+EG  +   THA G+V+   PL 
Sbjct: 468  ALPVGTTIAQALERVPELKQIYTTNPDLARLIDWAQKVEGRMKSVGTHACGVVVSRTPLE 527

Query: 541  QLVPMYRDVRS-DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
             +VP+ R  +  +  +  F    ++K GL+K D LGL  L+++ ++L+++AQ    K++L
Sbjct: 528  DIVPLQRTTKDENALMAAFEGPTLQKMGLLKMDVLGLTNLSVVAEALEYIAQTTGRKMEL 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD + +  L+   T  +FQLES GM + L  ++P  +ED+ A+V+LYRPGP++ I
Sbjct: 588  ADIPLDDPKVFEALSRGETTNVFQLESPGMTRYLMQLKPTRVEDLYAMVALYRPGPLEQI 647

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             VY + KN  + I  +HP++ P+L++T GVI+YQEQ+M++ Q ++ Y+L +A ++ +A+ 
Sbjct: 648  PVYIHNKNNPQDIKYLHPILKPILEDTYGVIVYQEQIMRLLQEVADYTLGQAYIVIKAIS 707

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK K+ M + + +F  G  + G+++  A  +++L+  FA Y FN+ H+  Y ++SYQTAW
Sbjct: 708  KKDKKLMAENEVKFKQGCLRKGLTQEQADQLWDLILPFAGYSFNRPHSTLYGLLSYQTAW 767

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI--- 835
            +K +YPVE++AA +       E I K   + RQ  + ++ P +N   +DF + + R    
Sbjct: 768  LKVNYPVEYMAAVLKGAGGVTEDIAKAVNECRQRGVPVLGPDINASALDFTIREFRDPSD 827

Query: 836  -------YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                    + LAAIK VG      I+    A+ PF SL+D C RVD   LN+RVLESL+ 
Sbjct: 828  GQIRRGILFGLAAIKNVGAGPIEAILRERDANGPFRSLDDLCERVDRHALNKRVLESLIK 887

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS--- 944
            AGALD    +R Q L  LD   +     +KNR     ++F +        I+        
Sbjct: 888  AGALDPLPGTRRQKLAILDTALEAGARAQKNRETGQIDMFGNIVADTDASISAIPLPTIN 947

Query: 945  --VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--------GNN 994
               ++   +   E+ +LG  FS    D  K  L    I       A           G  
Sbjct: 948  ETPDDRKEQLAWEKELLGVVFSS---DPRKVALADAAIDNRVPLAALRDPEGLQEYMGKV 1004

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEP-AKEYEANFFP 1033
               A M+   +   T+KG  +      +      E   FP
Sbjct: 1005 HTFAGMLTRVRAISTKKGDSMLVAALEDEHEDVVELVAFP 1044


>gi|311741557|ref|ZP_07715381.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium
            pseudogenitalium ATCC 33035]
 gi|311303727|gb|EFQ79806.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium
            pseudogenitalium ATCC 33035]
          Length = 1194

 Score =  934 bits (2415), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/1078 (28%), Positives = 541/1078 (50%), Gaps = 53/1078 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +   + K+ SFVHL  H+ +S+L+G   ++ + D++   + PA+ +TD  N++ +  F +
Sbjct: 1    MMSRMAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVRQEMPAVGMTDHGNMYGSDAFYR 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            +   AG++PIIG +  +  +                    +         ++   A G +
Sbjct: 61   RMTGAGVKPIIGIEAYMAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMIAENATGLR 120

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L  L S      Q  +  R+    + E   +G+I  TG  SG +           A + 
Sbjct: 121  NLFTLSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFNEALEA 179

Query: 171  LLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
               ++ ++  D  ++ L  H    ++     ++++    +LP + TN+  ++ E    AH
Sbjct: 180  AAMWQDIYGKDNFFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPAH 239

Query: 229  DVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQ 286
            + ++ V         DR +     +Y+K+ ++M   + D +P+  +NT+ IA R     +
Sbjct: 240  EAMLCVQTGKTFMDPDRFKFGGTGYYIKSAAQMRETWDDMIPDGCDNTLWIAERVQDYGE 299

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
            +        +            + L ++ + GL+ R     +      ++Y +R  +E++
Sbjct: 300  IWEEHTHDRMPIADVPEGHTPTSWLTHEVMEGLQKRFPGQDV-----PEEYIERAKYEIS 354

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI    +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDPL   LLFER
Sbjct: 355  VIEMKGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGALVAYALTITNIDPLEHDLLFER 414

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL- 465
            FLNP+R S PD DIDF   RR E+I Y   ++G ++VAQ+ITFG+++ K A++D  +   
Sbjct: 415  FLNPERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAKVHF 474

Query: 466  -QMPYSQVDRL---------CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             Q  +   DR+          K IP         +  ++ +  R+   +DP V ++ + +
Sbjct: 475  GQPGFQMADRINGALPPAIMAKDIPLKGITDPDHERYSEAAEVRQMVESDPDVKKIYDTA 534

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + LEG+ R A  HA  +++    L   +PM++       +T ++    E  GL+K DFLG
Sbjct: 535  RGLEGVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMDFLG 594

Query: 576  LKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET---YHLLTTKGTLGIFQLESSGMRQA 631
            L+ LT++  +++ + + RG ++ L  +  DD +    Y LL+   TLG+FQL+S GM++ 
Sbjct: 595  LRNLTVIGDAIENIKRNRGEEIHLEQLHADDPKVSKVYDLLSRGDTLGVFQLDSGGMQEL 654

Query: 632  LEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKET 685
            L+ M+P   +DI+A ++LYRPGP+  +    Y +RKNG+++I  IHP ++     +L ET
Sbjct: 655  LKRMKPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEILDET 714

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+I+YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + +Q ++F  G  +NG SK+ 
Sbjct: 715  YGLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMQENGYSKSA 774

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               ++  +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K   +
Sbjct: 775  MDALWGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKSAIY 834

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDS 864
              D R   I+++PPSVN    DF+     I + + AI+ VG+     I+++  D   F S
Sbjct: 835  LSDCRHLGIKVLPPSVNESEEDFQAVGEDIRFGMGAIRNVGSEVVESIIKSRHDKGAFTS 894

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              D+  +++     +RV E+L+ AGA D   + R  L+   ++     Q  +K       
Sbjct: 895  FSDYLDKIELAACTKRVTEALIKAGAFDDLNHPRKGLMLIHEDAVDAVQTTKKAADKGQF 954

Query: 925  NIFAHEKGTFSD------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
            ++FA   G   D       + + +    +       E+ +LG Y SGHPLD ++  L   
Sbjct: 955  DLFAGIGGGEDDAASNAFALDIPE-DNWDRKHELALEREMLGLYVSGHPLDGFEEALAAQ 1013

Query: 979  GIKGYEESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
                  + +      G  + +  ++    ++ +++ GS    VT  +    + E   F
Sbjct: 1014 TDTPLTKILNDEVHNGQELIIGGIISGVDRRFSKRDGSPWAIVTVEDHNGAQVEILVF 1071


>gi|255325317|ref|ZP_05366423.1| DNA polymerase III subunit alpha [Corynebacterium tuberculostearicum
            SK141]
 gi|255297882|gb|EET77193.1| DNA polymerase III subunit alpha [Corynebacterium tuberculostearicum
            SK141]
          Length = 1190

 Score =  934 bits (2413), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/1074 (28%), Positives = 540/1074 (50%), Gaps = 53/1074 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+ SFVHL  H+ +S+L+G   ++ + D++   + PA+ +TD  N++ +  F ++   
Sbjct: 1    MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVRQEMPAVGMTDHGNMYGSDAFYRRMTG 60

Query: 65   AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIG +  +  +                    +         ++   A G + L  
Sbjct: 61   AGVKPIIGIEAYMAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMIAENATGLRNLFT 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   +G+I  TG  SG +           A +    +
Sbjct: 121  LSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFNEALEAAAMW 179

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++  D  ++ L  H    ++     ++++    +LP + TN+  ++ E    AH+ ++
Sbjct: 180  QDIYGKDNFFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPAHEAML 239

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAP 290
             V         DR +     +Y+K+ ++M   + D +P+  +NT+ IA R     ++   
Sbjct: 240  CVQTGKTFMDPDRFKFGGTGYYIKSAAQMRETWDDMIPDGCDNTLWIAERVQDYGEIWEE 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +            + L ++ + GL+ R     +      ++Y +R  +E++VI  
Sbjct: 300  HTHDRMPIADVPEGHTPTSWLTHEVMEGLQKRFPGQDV-----PEEYIERAKYEISVIEM 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDPL   LLFERFLNP
Sbjct: 355  KGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGALVAYALTITNIDPLEHDLLFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468
            +R S PD DIDF   RR E+I Y   ++G ++VAQ+ITFG+++ K A++D  +    Q  
Sbjct: 415  ERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAKVHFGQPG 474

Query: 469  YSQVDRL---------CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            +   DR+          K IP         +  ++ +  R+   +DP V ++ + ++ LE
Sbjct: 475  FQMADRINGALPPAIMAKDIPLKGITDPDHERYSEAAEVRQMVESDPDVKKIYDTARGLE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++    L   +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 535  GVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 594

Query: 580  TLLQKSLDFLAQ-RGVKVDLSLIPFDDHET---YHLLTTKGTLGIFQLESSGMRQALEGM 635
            T++  +++ + + RG ++ L  +  DD +    Y LL+   TLG+FQL+S GM++ L+ M
Sbjct: 595  TVIGDAIENIKRNRGEEIHLEQLHADDPKVSKVYDLLSRGDTLGVFQLDSGGMQELLKRM 654

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVI 689
            +P   +DI+A ++LYRPGP+  +    Y +RKNG+++I  IHP ++     +L ET G+I
Sbjct: 655  KPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEILDETYGLI 714

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + +Q ++F  G  +NG SK+    +
Sbjct: 715  VYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMQENGYSKSAMDAL 774

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +  +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K   +  D 
Sbjct: 775  WGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKSAIYLSDC 834

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDF 868
            R   I+++PPSVN    DF+     I + + AI+ VG+     I+++  D   F S  D+
Sbjct: 835  RHLGIKVLPPSVNESEEDFQAVGEDIRFGMGAIRNVGSEVVESIIKSRHDKGAFTSFSDY 894

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              +++     +RV E+L+ AGA D   + R  L+   ++     Q  +K       ++FA
Sbjct: 895  LDKIELAACTKRVTEALIKAGAFDDLNHPRKGLMLIHEDAVDAVQTTKKAADKGQFDLFA 954

Query: 929  HEKGTFSD------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
               G   D       + + +    +       E+ +LG Y SGHPLD ++  L       
Sbjct: 955  GIGGGEDDAASNAFALDIPE-DNWDRKHELALEREMLGLYVSGHPLDGFEEALAAQTDTP 1013

Query: 983  YEESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
              + +      G  + +  ++    ++ +++ GS    VT  +    + E   F
Sbjct: 1014 LTKILNDEVHNGQELIIGGIISGVDRRFSKRDGSPWAIVTVEDHNGAQVEILVF 1067


>gi|298372024|ref|ZP_06982014.1| DNA polymerase III, alpha subunit [Bacteroidetes oral taxon 274 str.
            F0058]
 gi|298274928|gb|EFI16479.1| DNA polymerase III, alpha subunit [Bacteroidetes oral taxon 274 str.
            F0058]
          Length = 1320

 Score =  934 bits (2413), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1159 (30%), Positives = 576/1159 (49%), Gaps = 146/1159 (12%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59
            SFVHL VHSS+S+L+G   + +++DK    + P IA+TD  +++   EF           
Sbjct: 2    SFVHLHVHSSFSVLDGMSRIEDLVDKAIKYEMPGIALTDHGSMYGIKEFLDYVKKVKKSA 61

Query: 60   ------------QKACAAGIQPIIGCQLDIDMQD----------NLKMTNQGKTPFPTVP 97
                        + A     +PI+G +     +            L+  N+      +  
Sbjct: 62   KEQLQKGKISEEECARIQSFKPILGVEAYCAARTLYDKDKNKKLFLERKNKDIIVDMSGF 121

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             ++LL    +GYQ L +LVS  ++ D   Q  RI  + L+   +EGLI+ +    G I +
Sbjct: 122  HLLLLAKNKKGYQNLCKLVSISWV-DGFYQKPRIDKNVLKTY-SEGLIVSSACLGGEIPQ 179

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-----------YDRYRESQVVQLAYT 206
                N    AE+ +  F+ +FGD  Y+ +Q H+              +    ++ +LA  
Sbjct: 180  YILNNEIDKAEETINWFRSVFGDDFYLEVQLHKPTRPEISNETYLNQQRVNEEIYRLARK 239

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
                +VATN+  F+  E  +AH+ L+ ++    +S  DR   T + Y+K   +M  +F++
Sbjct: 240  TGTKVVATNDIHFVEAEHADAHERLVCLSTGKKISDTDRMLYTKEEYMKTPEQMRELFAE 299

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI----------------------- 303
             PE ++NT+E+  +        +PI+P+F   E                           
Sbjct: 300  HPEVIDNTLEVLSKVELFSLDSSPIMPKFDIPEEFGTVEGYRQQFTEQDLIAEFSRTAEN 359

Query: 304  -----------------------QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
                                    K E + L      G + R A             R+R
Sbjct: 360  KPLDEEQAAKRIAELGGVEKLYRIKLEADYLTKITYDGAKERYAD-------ITDQIRER 412

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            +DFELN I  M F GYFLIV DF+  A++ N+ VGPGRGS AGSV AY L IT+IDP ++
Sbjct: 413  IDFELNTIKSMGFPGYFLIVQDFVAAARQMNVWVGPGRGSAAGSVVAYCLKITNIDPFKY 472

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNPDR+S+PD DIDF  D   +V+ +V +KYG E VA II +G++  K A+ D
Sbjct: 473  DLLFERFLNPDRISLPDIDIDFDNDGLSQVLEWVTHKYGKECVAHIINYGTMATKLAITD 532

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQA-----------IADDSRFREARLADPSVD 509
            VGR  ++P ++V+   K+IP+   +    +            +      +      P++ 
Sbjct: 533  VGRIQEIPLNEVNNFKKIIPDSLENYKDEKTGKTPKMNISNILKYSKEVQRWCKEKPAIA 592

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD-------LPVTQFNMKW 562
             +++ + +LEG  R    HA GI+I    L+  VP+      D       + VTQ++   
Sbjct: 593  EMMKYADQLEGTVRQTGVHACGIIIAPDDLTNFVPLSTAKEKDKSKKDTEVLVTQYDGHV 652

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            IE+ GLIK DFL LKTL+++++++  + + + + +D++ I ++D  T+ L     T+G+F
Sbjct: 653  IEQIGLIKMDFLALKTLSIMKETVANIKKSKNIDLDINNIDWNDKATFELFAQGNTIGVF 712

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            Q ES+GMR+ L  ++P  IED+IA+ +LYRPGP+D I  + +RK+G+  I    P+++  
Sbjct: 713  QFESTGMRKYLMQLKPTSIEDLIAMNALYRPGPMDYIPDFIDRKHGRMPITYDIPIMEQY 772

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            LK+T G+ +YQEQVM +++ L+G++  ++D LR+AMGKKIK  + + K +FI G   NG 
Sbjct: 773  LKDTYGITVYQEQVMLLSRQLAGFTRGQSDQLRKAMGKKIKAMLMELKPKFIDGGVGNGH 832

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
             + I   I+E   KFA Y FNKSH+  YAV++YQTA++KTHYP EF+AA++TL    + +
Sbjct: 833  DRNILEKIWEDWEKFASYAFNKSHSTCYAVLAYQTAYLKTHYPAEFMAANLTLNKGKITE 892

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-D 859
            + KF ++ +   I ++ P VN   + F V     I + L  IK VG  T   I+E    +
Sbjct: 893  VNKFMEECKIMKIPVLLPDVNESDMLFTVNTKGEIRFGLGGIKNVGEATVEGIIEERKNN 952

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS---LDNIQKYAQWV 915
              F S+ DF  RV+ K  N++ +ES   +GALD F    R    QS   ++N+ ++ +  
Sbjct: 953  GSFKSIFDFLERVNLKSCNKKAIESFALSGALDSFTDMKREDYFQSEETINNLMEWGRKA 1012

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            +  R++   ++F  E+   +      K    +   R  +E+ ++G Y S HPLD Y+ I+
Sbjct: 1013 QAGRSSLQNSLFGEEEFDHT-YPQFPKAEAWSDLKRLNSEKDLIGIYLSAHPLDEYRSII 1071

Query: 976  RKMGIKGYEESV--------------------ATIRGNNI--RLAAMVVSKQQKKTRKGS 1013
            +        E                      A I+   +   +  ++V    + ++KG+
Sbjct: 1072 QYGCSHSIAELKSIETELKQELDTIPNNEILSARIKARQVDFCVGGIIVHTSIQTSQKGN 1131

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            + G     +   + E   F
Sbjct: 1132 QYGIFVLEDYTDQIEFRLF 1150


>gi|326570853|gb|EGE20877.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis BC7]
          Length = 1240

 Score =  933 bits (2412), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1094 (35%), Positives = 585/1094 (53%), Gaps = 100/1094 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    AGI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124
            IIG ++ +         +  K       S++L   +  GYQ L+ L+S  Y         
Sbjct: 62   IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 125  --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT      I +    N+   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILT--HRSEIAQPLLGNNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE-------------EDYEAHD 229
            Y+ ++R +  D       +  A    + ++A N+  F+                D++AH+
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232

Query: 230  VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +A+   ++   RPR   +  Y K++ +M  +F+DLP+A+ENT  +A RC+  + + 
Sbjct: 233  ARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNITITLG 292

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI------AKGYHAQDYRQRLD 342
              +LP F   + + I    E   +  +  GL  RL +               + Y +RLD
Sbjct: 293  INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L
Sbjct: 349  YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV 
Sbjct: 409  LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEISQ 516
            R    P+   DR+ K+IP  P   +   A   + + +E  L +P          + E+++
Sbjct: 469  RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKEL-LTNPDAPDHELALEIWEMAK 526

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            KLEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLGL
Sbjct: 527  KLEGLTRNVGKHAGGVLIAPNRISDFSAIYCD-GEGHPVSQYDKDDVEAVGLVKFDFLGL 585

Query: 577  KTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQ 630
            + LT+LQ ++D + Q          DL  +P DD + Y  +L    T  +FQLESSGM++
Sbjct: 586  RNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKK 645

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLK 683
             L  ++P  IED+IA+ +LYRPGP+++ +V  + +RK+G +++   HP     L+ P L+
Sbjct: 646  YLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLE 705

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I  
Sbjct: 706  STYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDG 765

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ 
Sbjct: 766  GLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVV 825

Query: 804  KFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP 861
                D R  F + I+PPSVN     F V D +   Y L A+KGVG      I+ A  D  
Sbjct: 826  FLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGA 885

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSL 905
            F  L DFC+RVD KK+ +R LE+L+ AG  D    +                R  L + L
Sbjct: 886  FKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQL 945

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
                  A    +N+     ++F     +      LE         R   EQ  LG Y +G
Sbjct: 946  PEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTG 1004

Query: 966  HPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW------V 1018
            HPLD Y+  L     +K   +   T +G    +A ++               +      V
Sbjct: 1005 HPLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDV-----------AFFGERIVV 1052

Query: 1019 TFSEPAKEYEANFF 1032
               +     E + +
Sbjct: 1053 KLDDGKGRIEMSCY 1066


>gi|145296091|ref|YP_001138912.1| DNA polymerase III subunit alpha [Corynebacterium glutamicum R]
 gi|140846011|dbj|BAF55010.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1194

 Score =  933 bits (2411), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/1073 (30%), Positives = 542/1073 (50%), Gaps = 51/1073 (4%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            ++ K  SFVHL  H+ +S+L+G   ++ + D++ A   PA+ ITD  N++ +  F +K  
Sbjct: 6    HMAKQSSFVHLHNHTEFSMLDGMAKIDMLADEVKAQGMPAVGITDHGNMYGSNPFYRKMT 65

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLI 113
              GI+PIIG +  +  +   K                +         +L     G + L 
Sbjct: 66   EMGIKPIIGIETYMAPESRFKKERVRWGEPHQKSDDVSGSGAYLHQTMLAENTTGLRNLF 125

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L S      Q  +  R+    + E   EG+I  TG  SG +           A +    
Sbjct: 126  YLSSMASYEGQLGKWPRMDADIIAERA-EGIIATTGCPSGDVQTRLRLGQFDEALEAAAM 184

Query: 174  FKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            ++ ++  D  ++ L  H    +    S+++++     LP + TN+  ++ E   +AH+ +
Sbjct: 185  WQDIYGRDNYFLELMDHGLDIETRVRSELLEIGRKLNLPPLVTNDCHYVLESQAQAHEAM 244

Query: 232  MAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHA 289
            + V     +  +DR +     +Y+K+  +M +++ D +P+  +NT+ IA R     ++  
Sbjct: 245  LCVQTGKTLHDEDRFKFGGTGYYVKSAEQMRALWDDMVPDGCDNTLWIAERVQSYDEIWE 304

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                  +            + L ++ +AGL+ R +   +      +DY +R ++E++VI 
Sbjct: 305  EHSHDRMPIADVPEGHTPTSWLHHEVMAGLKDRFSGQQV-----PEDYIERAEYEISVID 359

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLN
Sbjct: 360  MKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHGLLFERFLN 419

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467
            P+R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K AL+D  R    Q 
Sbjct: 420  PERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQALKDSARVQMGQP 479

Query: 468  PYSQVDRLCK-LIPNDPAHPVSLQAIAD--DSRF------REARLADPSVDRLLEISQKL 518
             Y   DR+ K L P   A  + L  I D    RF      R+    DP V R+ + ++ L
Sbjct: 480  GYQIADRVIKELPPAIMAKDIPLSGITDPDHPRFNEAGAVRQLIETDPDVKRIYDTARGL 539

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EG+ R +  HA  +++   PL   +PM++       +T ++    E  GL+K DFLGL+ 
Sbjct: 540  EGVVRQSGVHACAVIMSSVPLLDCIPMWKRPADGALITGWDYPACEAIGLLKMDFLGLRN 599

Query: 579  LTLLQKSLDFLA--QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            LT++  +++ +   + G  +DL  +  +D ETY LL    TLG+FQL+  GM++ L+ MQ
Sbjct: 600  LTVIGDAIENIKANRDGEVLDLENLAIEDEETYKLLGRGETLGVFQLDGGGMQELLKRMQ 659

Query: 637  PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVII 690
            P    DI+A ++LYRPGP+  +    Y +RKNG++ I  IHP ++  L+E    T G+I+
Sbjct: 660  PTGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEALEEILGETYGLIV 719

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQ+M+I+Q ++ Y+  +AD  R+AMGKK  E ++K+   F  G   NG S      ++
Sbjct: 720  YQEQIMRISQKVANYTAGQADGFRKAMGKKKPEVLEKEFANFEGGMKANGYSDAAIKTLW 779

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            + +  FA Y FNKSHAA Y ++S+ TA++K HY  E++AA +T   DN +K   +  D R
Sbjct: 780  DTILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKSAIYLSDCR 839

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFC 869
               I+++ P +N   ++F      I Y L AI+ VG      I++   +   F    D+ 
Sbjct: 840  HLGIRVLSPDINESSLNFLPVGTDIRYGLGAIRNVGAEVVDSILDTRKEKGLFKDFSDYL 899

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             ++D+   N+R+ ESL+  GA D  G++R  L+   ++        +K       ++FA 
Sbjct: 900  DKIDTLPCNKRITESLIKGGAFDSLGHARKGLMLVFEDAVDSVIATKKAADKGQFDLFAA 959

Query: 930  EKGTFSD------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                 +D      +IT+      +       E+ +LG Y SGHPLD Y+  +        
Sbjct: 960  FDSDNNDDVASFFQITVPD-DEWDRKHELALEREMLGLYVSGHPLDGYEDAIAAQVDTAL 1018

Query: 984  EESVA--TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
               VA     G  + +  ++    ++ ++K GS    VT  +      E   F
Sbjct: 1019 TTIVAGELKHGAEVTVGGIISGVDRRFSKKDGSPWAIVTIEDHNGASVELLVF 1071


>gi|156740220|ref|YP_001430349.1| DNA polymerase III subunit alpha [Roseiflexus castenholzii DSM 13941]
 gi|156231548|gb|ABU56331.1| DNA polymerase III, alpha subunit [Roseiflexus castenholzii DSM
            13941]
          Length = 1272

 Score =  932 bits (2410), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1060 (32%), Positives = 552/1060 (52%), Gaps = 54/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS YSLL+G  +   I  +       +IA+TD   ++ A+EF   A  AGI+P
Sbjct: 3    DFVHLHVHSEYSLLDGYAATGAIAARAVELGMDSIALTDHGVMYGAMEFYTNAKKAGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG +  +      + T++G   +     ++LL     GY+ L+ L +R +L   GK   
Sbjct: 63   IIGLEAYMAPGSRREATSRGAKHY---YHLLLLAKDEIGYRNLVRLTTRAHLDGMGKGVF 119

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               RI  + L E   EGLI+ +   +G + +       + A +    ++ L   D  ++ 
Sbjct: 120  ARPRIDRALL-EQHHEGLIVTSACIAGEVIQRLKEEQKEQAREIAAYYRDLLGPDNYFLE 178

Query: 186  LQRHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            LQ H           ++V++     +PLV TN++ F+  ED +AH +++A+ ++  + + 
Sbjct: 179  LQLHDNTPELEAINDELVRIGKELGIPLVVTNDTHFVRPEDVDAHKMILALGYNMTLKEL 238

Query: 244  DRPRVTPD--HYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKEC 300
               +   D  +++ +  EM   F       LENT  IA RC+  L+     LP     E 
Sbjct: 239  CAKQYEMDATYHIMSGEEMWRRFKKYGTTPLENTRRIAERCNLNLEFGRVQLPTIDIPEG 298

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D      + LR     GL  R        G   + Y +RL++EL+VI +  F  Y LIV
Sbjct: 299  HDAS----SYLRFVCEEGLMRRF------NGNPPEAYMKRLEYELDVINQTGFPDYMLIV 348

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D++++A+   IP  P RGS   S+  Y L ITD+DP++  LLFERFL+P+R+ MPD DI
Sbjct: 349  WDYVKFARARGIPCLP-RGSAGASLILYCLGITDVDPVKNKLLFERFLSPERLEMPDIDI 407

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR EV+ Y+  +YG E  AQIIT+G+L AKAA+RD+GR L +P S+VDR+ +LIP
Sbjct: 408  DFADSRRHEVLEYIAERYGRENTAQIITYGTLGAKAAIRDIGRVLDIPLSEVDRVARLIP 467

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              P      QA+      ++    +P +  L++ +QK+EG  +   THA G+V+   PL 
Sbjct: 468  ALPVGTTIAQALERVPELKQIYETNPELANLIDWAQKVEGRMKSVGTHACGVVVSRTPLE 527

Query: 541  QLVPMYRDVRS-DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            ++VP+ R  +  +  +  F    ++K GL+K D LGL  L+++ ++L ++AQ     ++L
Sbjct: 528  EIVPLQRTTKDENALMAAFEGPTLQKMGLLKMDVLGLTNLSVVAEALQYIAQTTGKTMEL 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD + +  L    T  +FQLES GM + L  ++P  +ED+ A+V+LYRPGP++ I
Sbjct: 588  ADIPLDDPKVFEALGRGETTNVFQLESPGMTRYLMQLKPTRVEDLYAMVALYRPGPLEQI 647

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             VY + KN  + I  +HP++ P+L++T GVI+YQEQ+M++ Q ++ Y+L +A ++ +A+ 
Sbjct: 648  PVYIHNKNHPQDITYLHPILKPILEDTYGVIVYQEQIMRLLQEVADYTLGQAYIVIKAIS 707

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK K+ M + + +F  G  + G+++  A  ++EL+  FA Y FN+ H+  Y ++SYQTAW
Sbjct: 708  KKDKKLMAENEVKFKQGCLRKGLTQEQADQLWELILPFAGYSFNRPHSTLYGLLSYQTAW 767

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI--- 835
            +K +YPVE++AA +       + I K   + RQ  + ++ P++N    DF + + R    
Sbjct: 768  LKVNYPVEYMAAVLKGAGGATDDIAKAVNECRQRGVPVLGPNINDSAFDFTIREFRDPSD 827

Query: 836  -------YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                    + LAAIK VG      I+    A  PF SLED C RVD   LN+RVLESL+ 
Sbjct: 828  GNLKRGILFGLAAIKNVGAGPIEAILRERDAGGPFRSLEDVCERVDRHALNKRVLESLIK 887

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---EKGTFSDKITLE--K 942
             GALD    +R Q L+ LD   +     +KNR     ++F     +       + L   +
Sbjct: 888  CGALDALPGNRWQKLEILDAAMEAGARAQKNRETGQIDMFGGLVSQAAEVIAALPLPVIE 947

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI--------KGYEESVATIRGNN 994
             + E    +   E+ +LG  FS    D  K  L +  I            E +    G  
Sbjct: 948  ETAERRKEKLAWEKELLGVVFSS---DPRKTALERANIEHRVPLAAIRNAEGLPDYLGKV 1004

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEP-AKEYEANFFP 1033
               A M+   +   T+KG  +   T  +      E   FP
Sbjct: 1005 HTFAGMLTRVRMIATKKGDTMLVATLEDENEDTVELVAFP 1044


>gi|298247514|ref|ZP_06971319.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963]
 gi|297550173|gb|EFH84039.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963]
          Length = 1173

 Score =  932 bits (2408), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/1057 (30%), Positives = 558/1057 (52%), Gaps = 47/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++    F HL VH+ YSLL+G   +  ++ +        +AITD   ++ ALEF +   A
Sbjct: 1    MQNFTDFAHLHVHTEYSLLDGFSRIKTLVKQAKELGMKHLAITDHGAMYGALEFYKACKA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              I+P++G +  +    N+K   +G+  +     ++LL     GY+ L+++++       
Sbjct: 61   NDIRPVLGVEAYLTEDMNVKAKKRGQRDY---THLLLLAKNNTGYRNLMKMMTIANTEGM 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLY 183
                 RI  +   +   EG+I  +    G + +         A+  +  ++  L     Y
Sbjct: 118  YANHARIDKNIFSQYA-EGIIATSSCLGGEVPQLLLEGKENEAKNIIRWYQDVLGRGNYY 176

Query: 184  VNLQRHRGYD--------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            + +Q H G++              +  L    ++P++ TN+  ++ + D  AH+VL+ V 
Sbjct: 177  LEIQEHHGHEKNGTPSPQDKLNKMLYGLHKELDVPMIVTNDLHYVQDTDAHAHEVLLCVQ 236

Query: 236  HSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
              + +S  +R    + +++L++  +M+ +F +L + L NTV +A +C      +   LP+
Sbjct: 237  TGSTLSDPNRFAFDSNEYFLRSPQQMLDLFPELHDGLLNTVRLAEQCEVDPLAYKAQLPK 296

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                +        +  L  + + G+  R        G   +  +++LD+EL++I +  F 
Sbjct: 297  V---DIPPQYGTPDEFLYAQCLEGIRYRF-------GELTEPLKRQLDYELSIIVQKGFV 346

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFL+VAD+++WA++  I     RGS AGS+ A+ L IT++DPLR+ LLFERFLNP+R  
Sbjct: 347  PYFLVVADYVRWAREQGIRC-LARGSAAGSLVAFTLGITNVDPLRYQLLFERFLNPERDD 405

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD D+DF  DRR+EVIRY+  KYGHE VAQ++TF S+ AK +++DV R++       D+
Sbjct: 406  MPDIDMDFPDDRREEVIRYLGEKYGHECVAQMVTFNSMAAKQSVKDVARSMG-RQDLGDK 464

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            + +LIP  P   +    + D     +    D     LL+++ KLEG  R    HAAG+++
Sbjct: 465  ISRLIPTGPKITLQGS-LNDVRDLNDLYQHDGEAKDLLDMALKLEGSVRSTGVHAAGVLV 523

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
             + PL   VP+ +  R     TQ+    +E+ GLIK+D LGL  LT+L  ++ F+ + RG
Sbjct: 524  ANEPLVNFVPLQK--REGRISTQYEHSHLEEIGLIKYDILGLSNLTILDNAVKFIKESRG 581

Query: 594  VKVDLSLIPFD---DH-------ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
              ++L  +P D   D        + Y LL    T G+FQLES+ MR+ ++ ++P CIEDI
Sbjct: 582  EDINLEKLPLDPTGDPELDRKRQKAYELLAAGETTGVFQLESAKMREYIKMLKPTCIEDI 641

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
             A+V+LYRPGP+D+I  + + K+G++K+  + P +   L+E+ GVI+YQ+QV+ IA  L+
Sbjct: 642  TAMVALYRPGPMDSIPDFVDAKHGRKKVTYLDPRLSQWLEESYGVIVYQDQVLLIAVNLA 701

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G+S  + +  R+A+ KKI  E++  K  F+ G  KNG+ + +A  +FE +  F  YGFNK
Sbjct: 702  GFSWGKVNKFRKALSKKIMHEVEGYKGDFLKGCVKNGVKQEVAETLFEQILPFGGYGFNK 761

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            +HAA+YAV+S+ TA++K +Y  EF+AA+MT E  + +KI     + ++  ++++ P VN 
Sbjct: 762  AHAASYAVVSFYTAYLKANYTAEFMAATMTAEAADAKKIANAIAECKRMGVEVLGPDVNK 821

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVL 882
                F + +  I + L AIKG+G      I+ A A+  PF SL DFC+RVD+  + +  +
Sbjct: 822  SQKGFAIENGGIRFGLLAIKGIGDGPIDGIIRARAEGGPFKSLGDFCTRVDAHAVGKGAI 881

Query: 883  ESLVFAGALDCFGYS---RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKI 938
            E+L+  GA+D    S   R  LL S++   +Y +     +     ++F   E+   S + 
Sbjct: 882  ETLIKVGAMDSLMPSENQRHILLASVERAVQYGKSERSAKERGLVSLFGDLEEVGGSLEF 941

Query: 939  TLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK-GYEESVATIRGNNIR 996
            +L   + E       E E+ ++G Y + HPL     I  + G      +    +    + 
Sbjct: 942  SLSTNAQEIPRKQLLEWERELIGVYIAKHPLAYLSDIFVERGATHTIGQVTEELDTKKVT 1001

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  M+   ++  T+KG  +  V   +         FP
Sbjct: 1002 VGGMIKEARRITTKKGDDMCVVQLEDMYGTLGITIFP 1038


>gi|193215617|ref|YP_001996816.1| DNA polymerase III subunit alpha [Chloroherpeton thalassium ATCC
            35110]
 gi|193089094|gb|ACF14369.1| DNA polymerase III, alpha subunit [Chloroherpeton thalassium ATCC
            35110]
          Length = 1190

 Score =  932 bits (2408), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/1072 (33%), Positives = 569/1072 (53%), Gaps = 64/1072 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL  H+ YS+    +    +  +       A+ +TD +++F+  E    A    ++ I
Sbjct: 4    FIHLHTHTHYSMQSSTIMPGELFAECQKLDMAAVGVTDYSSMFNMPELFSYAKKHEVKLI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +L +      +   Q       +  ++LLV    GY+ L +++S        KQ  R
Sbjct: 64   IGAELFLVPGAMTEKKEQ------VLYHLILLVKNETGYKNLCKILSAAARDGFYKQMPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               + +Q+   EGLI LT    G + +    +    A   +  +K LF D  Y+ +  H 
Sbjct: 118  ADFNLIQK-NAEGLICLTACREGELSQYILKDEIDKARDFVARYKNLFQDDFYIEMHSHN 176

Query: 191  GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D  R ++  + LA    + LVATN+  +L +ED +  D L A+ +   +S  +R R+ 
Sbjct: 177  APDDARLNEAKIALAKEFGIKLVATNDVHYLKKEDAQYQDALQALKNKQTLSSPNRNRLP 236

Query: 250  PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             +H YLK   EM  +F +    L NT+EIA +C+F+     P LP F         + +E
Sbjct: 237  TEHFYLKTPDEMARMFDNAQGELVNTLEIAEKCTFVFNDQQPHLPHFPIPSE---FENDE 293

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR+    G + +      A G    + R+R+++EL++I +M ++ YFLIV+D I  ++
Sbjct: 294  AYLRHLTYEGAKKKY-GDLDAMGEKGAEVRERIEYELSIICKMGYATYFLIVSDLISASR 352

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +    VGPGRGS AGS+ AY   IT +DP+++ LLFERFLNP+R+SMPD DIDF    + 
Sbjct: 353  EMGYSVGPGRGSAAGSIVAYLTNITQVDPIKYKLLFERFLNPERVSMPDIDIDFTPVGKQ 412

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             V+ Y   KYG   VA++I  G+L AKAA+RDVGR L +    VD++ KL+P  P   +S
Sbjct: 413  RVLDYTIKKYGAASVAKVIAVGTLGAKAAIRDVGRVLDINLQTVDKIAKLVPGKPGMTLS 472

Query: 489  LQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             +A      F E   + +  + +L++ ++ LEG  R+ S HAA +V+ D P+ ++VP+Y 
Sbjct: 473  -KAADQVKEFAELESSPEQKIQKLMKFAKALEGRARNVSMHAAAVVVTDGPVEEVVPLYV 531

Query: 548  DVRSDL----------------------------PVTQFNMKWIEKAGLIKFDFLGLKTL 579
              + +                              VTQF+  WIEKAGL+K D+LGL+TL
Sbjct: 532  SNKIETEERRYIDEFDEKSEKEKGKGKSGDDQKQVVTQFDKDWIEKAGLLKIDYLGLETL 591

Query: 580  TLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
             ++ ++L  + +R  V +DL  +P DD + Y +       GIFQ ES GM+Q +  ++P 
Sbjct: 592  AVVDETLRLIQKRYGVTIDLESVPIDDKKAYKIFQEGKMAGIFQFESQGMQQYMMKLRPT 651

Query: 639  CIEDIIALVSLYRPGPI--------DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
             I DIIA+ +LYRPG +        + + ++ +RKNG+EKI  +HP++  +L+ET GVI+
Sbjct: 652  VIGDIIAMSALYRPGALNARIDENRNAVDLFVDRKNGREKIEYMHPMLAEILEETYGVIV 711

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVM ++Q++ G+SL++AD LR+AMGKK  E M K K+ F+ GA +  + K +A  IF
Sbjct: 712  YQEQVMLVSQVMGGFSLAKADNLRKAMGKKKPEIMAKFKDEFVEGAVEKSVDKAVATGIF 771

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            +L+A+FA YGFNKSH+AAY +++Y TA++K HY  EF+AA +  E  +  ++K    +A+
Sbjct: 772  DLMAEFAGYGFNKSHSAAYGILAYWTAYLKAHYTAEFMAAILNSEAGDTARMKHLTDEAK 831

Query: 811  QFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEA--SADKPFD 863
               I I+PPS+N     F V     G   I    +AIK VG   AR I+ +     +PF 
Sbjct: 832  SMGIAILPPSINHSDALFMVEDIEKGKKAIRVGFSAIKHVG-GAAREIVRSRWRRKEPFA 890

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
             L D CS VD + +N++ LE L+ AGALD F  +R +L+ +L    +Y Q   K+ T   
Sbjct: 891  DLFDLCSTVDLRVVNKKALECLIEAGALDEFDENRAKLIGNLPKAVEYGQKRNKSATLGQ 950

Query: 924  ENIFAHE---KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
            E  F  E            +E+F     + + E E+ ++GFY S HPL+ Y+        
Sbjct: 951  EGFFNDENFFADKADAYPEMEEFEPWPDAEKLEREKNLIGFYVSTHPLEPYRRDYEAFAT 1010

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +          ++  ++V  ++   +KG+ + +    +   + +   F
Sbjct: 1011 IKLSD-KDIQNKRLQKVIGVIVETKKHFDKKGNEMMFGVIEDFTGKADFTVF 1061


>gi|326570115|gb|EGE20160.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis BC8]
          Length = 1240

 Score =  932 bits (2408), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1094 (35%), Positives = 585/1094 (53%), Gaps = 100/1094 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    AGI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124
            IIG ++ +         +  K       S++L   +  GYQ L+ L+S  Y         
Sbjct: 62   IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 125  --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT      I +    N+   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILT--HRSEIAQPLLGNNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE-------------EDYEAHD 229
            Y+ ++R +  D       +  A    + ++A N+  F+                D++AH+
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232

Query: 230  VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +A+   ++   RPR   +  Y K++ +M  +F+DLP+A++NT  +A RC+  + + 
Sbjct: 233  ARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNITITLG 292

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI------AKGYHAQDYRQRLD 342
              +LP F   + + I    E   +  +  GL  RL +               + Y +RLD
Sbjct: 293  INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L
Sbjct: 349  YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV 
Sbjct: 409  LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEISQ 516
            R    P+   DR+ K+IP  P   +   A   + + +E  L +P          + E+++
Sbjct: 469  RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKEL-LTNPDAPDHELALEIWEMAK 526

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            KLEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLGL
Sbjct: 527  KLEGLTRNVGKHAGGVLIAPNSISDFSAIYCD-GEGHPVSQYDKDDVEAVGLVKFDFLGL 585

Query: 577  KTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQ 630
            + LT+LQ ++D + Q          DL  +P DD + Y  +L    T  +FQLESSGM++
Sbjct: 586  RNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKK 645

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLK 683
             L  ++P  IED+IA+ +LYRPGP+++ +V  + +RK+G +++   HP     L+ P L+
Sbjct: 646  YLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLE 705

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I  
Sbjct: 706  STYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDG 765

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ 
Sbjct: 766  GLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVV 825

Query: 804  KFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP 861
                D R  F + I+PPSVN     F V D +   Y L A+KGVG      I+ A  D  
Sbjct: 826  FLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGA 885

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSL 905
            F  L DFC+RVD KK+ +R LE+L+ AG  D    +                R  L + L
Sbjct: 886  FKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQL 945

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
                  A    +N+     ++F     +      LE         R   EQ  LG Y +G
Sbjct: 946  PEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTG 1004

Query: 966  HPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW------V 1018
            HPLD Y+  L     +K   +   T +G    +A ++               +      V
Sbjct: 1005 HPLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDV-----------AFFGERIVV 1052

Query: 1019 TFSEPAKEYEANFF 1032
               +     E + +
Sbjct: 1053 KLDDGKGRIEMSCY 1066


>gi|227504715|ref|ZP_03934764.1| DNA polymerase III subunit alpha [Corynebacterium striatum ATCC 6940]
 gi|227198725|gb|EEI78773.1| DNA polymerase III subunit alpha [Corynebacterium striatum ATCC 6940]
          Length = 1190

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/1074 (28%), Positives = 537/1074 (50%), Gaps = 53/1074 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+ SFVHL  H+ +S+L+G   ++ + D++   + PA+ +TD  N++ +  F +K  +
Sbjct: 1    MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVRQEMPAVGMTDHGNMYGSNAFYKKMTS 60

Query: 65   AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIG +  +  +                    +         +L   A G + L +
Sbjct: 61   AGVKPIIGIEAYMAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMLAENATGLKNLFK 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +           A +    +
Sbjct: 121  LSSLASYEGQLGKWPRMDAELIAE-HAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAMW 179

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++  D  ++ L  H    ++     ++++    +LP + TN+  ++ E    +H+ ++
Sbjct: 180  QDIYGKDNFFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPSHEAML 239

Query: 233  AVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAP 290
             V         DR +     +Y+K+ ++M  I+ D +P+  +NT+ IA R     ++   
Sbjct: 240  CVQTGKTFMDPDRFKFDGTGYYIKSAAQMREIWDDMIPDGCDNTLWIAERVQDYGEIWEE 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +            + L ++ + GL+ R     +      ++Y +R ++E++VI  
Sbjct: 300  HTHDRMPIADVPEGHTPTSWLTHEVMEGLQDRFPGKEV-----PEEYVKRAEYEISVIDM 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLNP
Sbjct: 355  KGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGALVAYALTITNIDPIEHDLLFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468
            +R S PD DIDF   RR E+I+Y  +++G ++VAQ+ITFG+++ K A++D  +    Q  
Sbjct: 415  ERPSAPDIDIDFDDRRRGEMIQYAADRWGEDKVAQVITFGTVKTKQAIKDSAKVHFGQPG 474

Query: 469  YSQVDRL---------CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            +   DR+          K IP         +  ++ +  R+    DP V ++ E ++ LE
Sbjct: 475  FQMADRINGALPPAIMAKDIPLAGIMDPEHERYSEATEVRQMIETDPDVKKIYETARGLE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++    L   +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 535  GVVRQAGVHACAVIMASVRLMDHIPMWQRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 594

Query: 580  TLLQKSLDFLAQ-RGVKVDLSLIPFDDH---ETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            T++   L+ + + RG ++ L  I  DD    + Y LL+   TLG+FQL+S GM++ L+ M
Sbjct: 595  TVIGDCLENIKKNRGEEIHLEEIHADDPNVSKVYELLSRGETLGVFQLDSGGMQELLKRM 654

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVI 689
            +P   +DI+A ++LYRPGP+  +    Y +RKNG+++I  IHP ++     +L ET G+I
Sbjct: 655  KPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLREILDETYGLI 714

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + +Q ++F  G  +NG SK     +
Sbjct: 715  VYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMQENGYSKDAMDAL 774

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +  +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K   +  D 
Sbjct: 775  WGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKSAIYLSDC 834

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDF 868
            R   I ++ P VN    +F+     I + + AI+ VG+     I++   +   + S  D+
Sbjct: 835  RHLGIHVLSPDVNESVENFQAVGEDIRFGMGAIRNVGSEVVESIVKTRKEKGAYTSFSDY 894

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              +++     +RV ESL+ AGA D   + R  L+   ++     Q  +K       ++FA
Sbjct: 895  LDKIELTACTKRVTESLIKAGAFDSMEHPRKGLMLIHEDAVDAVQTTKKAADKGQFDLFA 954

Query: 929  HEKGTFSDK------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
               G    +      I +      +       E+ +LG Y SGHPLD ++  L       
Sbjct: 955  GFGGEEQAEVASAFAIDIPD-ENWDRKHELALEREMLGLYVSGHPLDGFEEALEAQTDTP 1013

Query: 983  YEESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
              + +      G  + +  ++    ++ +++ GS    V   +    + +   F
Sbjct: 1014 LPKILSGEVYNGQELVIGGIISGVDRRFSKRDGSPWAIVNMEDHNGAQVDILVF 1067


>gi|296113397|ref|YP_003627335.1| DNA polymerase III alpha subunit [Moraxella catarrhalis RH4]
 gi|295921091|gb|ADG61442.1| DNA polymerase III alpha subunit [Moraxella catarrhalis RH4]
          Length = 1240

 Score =  931 bits (2406), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1094 (35%), Positives = 585/1094 (53%), Gaps = 100/1094 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    AGI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124
            IIG ++ +         +  K       S++L   +  GYQ L+ L+S  Y         
Sbjct: 62   IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 125  --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT      I +    N+   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILT--HRSEIAQPLLGNNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE-------------EDYEAHD 229
            Y+ ++R +  D       +  A    + ++A N+  F+                D++AH+
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232

Query: 230  VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +A+   ++   RPR   +  Y K++ +M  +F+DLP+A++NT  +A RC+  + + 
Sbjct: 233  ARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNITITLG 292

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI------AKGYHAQDYRQRLD 342
              +LP F   + + I    E   +  +  GL  RL +               + Y +RLD
Sbjct: 293  INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L
Sbjct: 349  YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV 
Sbjct: 409  LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEISQ 516
            R    P+   DR+ K+IP  P   +   A   + + +E  L +P          + E+++
Sbjct: 469  RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKEL-LTNPDAPDHELALEIWEMAK 526

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            KLEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLGL
Sbjct: 527  KLEGLTRNVGKHAGGVLIAPNRISDFSAIYCD-GEGHPVSQYDKDDVEAVGLVKFDFLGL 585

Query: 577  KTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQ 630
            + LT+LQ ++D + Q          DL  +P DD + Y  +L    T  +FQLESSGM++
Sbjct: 586  RNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDTDVYTSVLQEAKTSAVFQLESSGMKK 645

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLK 683
             L  ++P  IEDIIA+ +LYRPGP+++ +V  + +RK+G +++   HP     L+ P L+
Sbjct: 646  YLAQLKPSNIEDIIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLE 705

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I  
Sbjct: 706  STYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDG 765

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ 
Sbjct: 766  GLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVV 825

Query: 804  KFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP 861
                D R  F + I+PPSVN     F V D +   Y L A+KGVG      I+ A  D  
Sbjct: 826  FLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGA 885

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSL 905
            F  L DFC+RVD KK+ +R LE+L+ AG  D    +                R  L + L
Sbjct: 886  FKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQL 945

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
                  A    +N+     ++F     +      LE         R   EQ  LG Y +G
Sbjct: 946  PEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTG 1004

Query: 966  HPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW------V 1018
            HPLD Y+  L     +K   +   T +G    +A ++               +      V
Sbjct: 1005 HPLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDV-----------AFFGERIVV 1052

Query: 1019 TFSEPAKEYEANFF 1032
               +     E + +
Sbjct: 1053 KLDDGKGRIEMSCY 1066


>gi|291279285|ref|YP_003496120.1| DNA polymerase III subunit alpha [Deferribacter desulfuricans SSM1]
 gi|290753987|dbj|BAI80364.1| DNA polymerase III, alpha subunit [Deferribacter desulfuricans
           SSM1]
          Length = 932

 Score =  930 bits (2405), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/929 (39%), Positives = 553/929 (59%), Gaps = 29/929 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            F+HL +H+ YSLL+GA+ ++ ++ K+      A+AITD   ++  ++F  +A A  I+P
Sbjct: 4   DFIHLHLHTQYSLLDGAIHISELMKKLKEHGSKAVAITDHGTMYGIVDFYTQALANDIKP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIGC++ +            K        +VLL     G + L  LVS  ++        
Sbjct: 64  IIGCEVYVAPDSRFNKNYSKKE--DKSYHLVLLAKNNAGLKNLQYLVSLGHIEG-FYYKP 120

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
           RI    L +  ++GLI L+   +    +    +    A++  L + ++F  D  Y+ +Q 
Sbjct: 121 RIDKELLAKY-SKGLIGLSACLASEPAQKALTDGYAAAKESALEYYEIFGKDNYYLEIQD 179

Query: 189 HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
           +   ++Y  + + ++++    +P+VATNN  FL++EDY +H VLM + +   ++  +R  
Sbjct: 180 NNIPEQYIVNTIFMEISRETGIPIVATNNCHFLNKEDYSSHQVLMCIQYQQTLNDPNRRD 239

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + + ++K+  EM   F ++ EAL NTV+IA RC+  +      LP +   E       
Sbjct: 240 SHSSELFVKSPEEMWQAFGEIEEALINTVKIAERCNVSMTFGELHLPVYDVPEG----YT 295

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +  L + A  GL  RLA+  +        Y QRL++EL +I    + GY+LIV DFI +
Sbjct: 296 LKTYLEHIAKEGLHKRLAKVPLELHSK---YYQRLEYELKIIHEKGYDGYYLIVWDFINF 352

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A+KN IPVGPGRGSGAGS+ AYA+ ITDIDP+++ LLFERFLNP+R SMPDFDID C +R
Sbjct: 353 ARKNKIPVGPGRGSGAGSLVAYAVGITDIDPIKYKLLFERFLNPERKSMPDFDIDICMNR 412

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EVI YV+NKYGH+RVAQIITFG L A+  +RDVGR L++P   VD++ K+IP  P   
Sbjct: 413 REEVIDYVRNKYGHDRVAQIITFGKLLARGVIRDVGRVLEIPLKTVDKIAKMIPAKPDLT 472

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           +  +A+  D   +    +      LLE + KLEGL R+A  HAAG+VI D+PL + VP+ 
Sbjct: 473 LK-KALEMDPELKPNIESIEKGKELLEHALKLEGLLRNAGMHAAGVVISDKPLVEYVPLC 531

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
           +    ++ VTQF    +EK GL+K DFLGLK LT++  +   + + +    D+S IP DD
Sbjct: 532 KGQNDEV-VTQFEKDTLEKVGLVKLDFLGLKNLTVIDYASKLIRKSKDPNFDISAIPLDD 590

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
            +T+ LL++  T G+FQLESSGM+  L+ ++P   EDII LV+LYRPGPI + +   +  
Sbjct: 591 KKTFELLSSGETTGVFQLESSGMKNLLKKLKPTTFEDIIVLVALYRPGPIGSGILDDFLK 650

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
           RK+G +++    P ++ +LKET G+I+YQEQVMQIAQ+++GYSL  AD+LRRAMGKK  E
Sbjct: 651 RKHGLQEVTYPLPELEEILKETYGIIVYQEQVMQIAQIVAGYSLGSADLLRRAMGKKKPE 710

Query: 724 EMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
           EM K ++ F        I GA K G  + IA  IF+L+AKFA+YGFNKSH+AAYA++SYQ
Sbjct: 711 EMAKHRKIFLYGDEKLGIEGAVKRGFDEKIASEIFDLMAKFAEYGFNKSHSAAYAMVSYQ 770

Query: 776 TAWMKTHYPVEFLAASMT--LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
           TA++K HYPVE++A+ +T   E     +I++   +     I ++ P +N    D  V  N
Sbjct: 771 TAYLKAHYPVEYMASIITQEFEFKYNYRIEELIAECNNMGITVLLPDINKSEKDTVVERN 830

Query: 834 RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I   L AI        + I E + +  F +L+DFC R+D   +N+  + S +  GA+D 
Sbjct: 831 LIKVGLKAIHDNDEIIDKIIFERNRNGEFKNLKDFCKRIDLTIVNKNAISSFIKYGAMDS 890

Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
           FG SR QLLQ L++  K     +K +   
Sbjct: 891 FGKSRKQLLQVLNDTIKLCLQEQKWKKTG 919


>gi|254992099|ref|ZP_05274289.1| DNA polymerase III (alpha subunit) DnaE [Listeria monocytogenes FSL
            J2-064]
          Length = 1108

 Score =  930 bits (2405), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1030 (35%), Positives = 577/1030 (56%), Gaps = 43/1030 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+P
Sbjct: 2    GFVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG            +T QG         ++L+  +  GY  L+++ S +   ++G    
Sbjct: 62   IIGMT----------VTIQGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---P 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             +  SWL+   +  LI ++ G+ G I+R     + + A +      ++F  + +Y++ Q+
Sbjct: 109  ELPQSWLRAYSSN-LIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQK 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P  
Sbjct: 168  ---ENPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLA 224

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P+ Y  ++ EM   +       A   T E+A RC   + +   +LPRF   E     + 
Sbjct: 225  GPN-YFTSQEEMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNEG----QN 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I++
Sbjct: 280  ASDVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +R
Sbjct: 332  SREAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     
Sbjct: 392  RDEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 452  LQ-KALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LGS-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F+V +     YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYF 963
            +D + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y 
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYV 927

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ 
Sbjct: 928  SAHPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDD 984

Query: 1024 AKEYEANFFP 1033
            +KE  A  FP
Sbjct: 985  SKELSAVMFP 994


>gi|254824367|ref|ZP_05229368.1| DNA polymerase III [Listeria monocytogenes FSL J1-194]
 gi|293593601|gb|EFG01362.1| DNA polymerase III [Listeria monocytogenes FSL J1-194]
          Length = 1108

 Score =  930 bits (2405), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1030 (35%), Positives = 578/1030 (56%), Gaps = 43/1030 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+P
Sbjct: 2    GFVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG            +T QG         ++L+  +  GY  L+++ S +   ++G    
Sbjct: 62   IIGMT----------VTIQGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---P 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             +  SWL+   +  LI ++ G+ G I+R     + + A +      ++F  + +Y++ Q+
Sbjct: 109  ELPQSWLRAYSSN-LIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQK 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P  
Sbjct: 168  ---ENPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLA 224

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P+ Y  ++ EM   +       A   T E+A RC   + +   +LPRF   E     + 
Sbjct: 225  GPN-YFTSQEEMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNEG----QN 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR  A AGL+ R   GA        +Y++RL++EL VI  M F+ YFLIV D I++
Sbjct: 280  ASDVLRQTAFAGLKERNLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +R
Sbjct: 332  SREAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     
Sbjct: 392  RDEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 452  LQ-KALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LGS-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F+V +     YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYF 963
            +D + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y 
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYV 927

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ 
Sbjct: 928  SAHPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDD 984

Query: 1024 AKEYEANFFP 1033
            +KE  A  FP
Sbjct: 985  SKELSAVMFP 994


>gi|217964278|ref|YP_002349956.1| DNA polymerase III subunit alpha [Listeria monocytogenes HCC23]
 gi|217333548|gb|ACK39342.1| DNA polymerase III subunit alpha [Listeria monocytogenes HCC23]
          Length = 1108

 Score =  930 bits (2405), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1030 (35%), Positives = 576/1030 (55%), Gaps = 43/1030 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+P
Sbjct: 2    GFVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG            +T QG         ++L+  +  GY  L+++ S +   ++G    
Sbjct: 62   IIGMT----------VTIQGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---P 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             +  SWL+   +  LI ++ G+ G I+R     +   A +       +F  + +Y++ Q+
Sbjct: 109  ELPQSWLRAYSSN-LIAISPGAKGEIERLLMEENRDGALEAYANLVDIFGKESVYLSAQK 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +    +++   +    +P+VAT N  +L  +D +A +VL A+  +  V     P  
Sbjct: 168  ---ENPRLFAKIETFSAEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLA 224

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P+ Y  ++ EM   +      +A   T E+A RC   + +   +LPRF   E     + 
Sbjct: 225  GPN-YFTSQEEMERDWQTDFEKQACFETGELADRCHVEIALDQHLLPRFPLTEG----QN 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR  A  GL+ R   GA        +Y++RL++EL VI  M F+ YFLIV D I++
Sbjct: 280  APDVLRQTAYDGLKERDLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++  +  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +R
Sbjct: 332  SREAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     
Sbjct: 392  RDEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 452  LQ-KALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LGS-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSKGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F+V +     YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYF 963
            +D + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y 
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYV 927

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ 
Sbjct: 928  SAHPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDD 984

Query: 1024 AKEYEANFFP 1033
            +KE  A  FP
Sbjct: 985  SKELSAVMFP 994


>gi|326559241|gb|EGE09672.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis 46P47B1]
          Length = 1240

 Score =  930 bits (2404), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1094 (35%), Positives = 586/1094 (53%), Gaps = 100/1094 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    AGI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124
            IIG ++ +         +  K       S++L   +  GYQ L+ L+S  Y         
Sbjct: 62   IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 125  --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT      I +    ++   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILT--HRSEIAQPLLSHNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE-------------EDYEAHD 229
            Y+ ++R +  D       +  A    + ++A N+  F+                D++AH+
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232

Query: 230  VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +A+S  ++   RPR   +  Y K++ +M  +F+DLP+A+ENT  +A RC+  + + 
Sbjct: 233  ARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNVTITLG 292

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI------AKGYHAQDYRQRLD 342
              +LP F   + + I    E   +  +  GL  RL +               + Y +RLD
Sbjct: 293  INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L
Sbjct: 349  YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV 
Sbjct: 409  LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEISQ 516
            R    P+   DR+ K+IP  P   +   A   + + +E  L +P          + E+++
Sbjct: 469  RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKEL-LTNPDAPDHELALEIWEMAK 526

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            KLEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLGL
Sbjct: 527  KLEGLTRNVGKHAGGVLIAPNHISDFSAIYCD-GEGHPVSQYDKDDVEAVGLVKFDFLGL 585

Query: 577  KTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQ 630
            + LT+LQ ++D + Q          DL  +P DD + Y  +L    T  +FQLESSGM++
Sbjct: 586  RNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKK 645

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLK 683
             L  ++P  IED+IA+ +LYRPGP+++ +V  + +RK+G +++   HP     L+ P L+
Sbjct: 646  YLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLE 705

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I  
Sbjct: 706  STYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDG 765

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ 
Sbjct: 766  GLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVV 825

Query: 804  KFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP 861
                D R  F + I+PPSVN     F V D +   Y L A+KGVG      I+ A  D  
Sbjct: 826  FLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGA 885

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSL 905
            F  L DFC+RVD KK+ +R LE+L+ AG  D    +                R  L + L
Sbjct: 886  FKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQL 945

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
                  A    +N+     ++F     +      LE         R   EQ  LG Y +G
Sbjct: 946  PEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTG 1004

Query: 966  HPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW------V 1018
            HPLD Y+  L     +K   +   T +G    +A ++               +      V
Sbjct: 1005 HPLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDV-----------AFFGERIVV 1052

Query: 1019 TFSEPAKEYEANFF 1032
               +     E + +
Sbjct: 1053 KLDDGKGRIEMSCY 1066


>gi|290894457|ref|ZP_06557416.1| DNA polymerase III [Listeria monocytogenes FSL J2-071]
 gi|290555995|gb|EFD89550.1| DNA polymerase III [Listeria monocytogenes FSL J2-071]
          Length = 1108

 Score =  930 bits (2403), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1030 (35%), Positives = 576/1030 (55%), Gaps = 43/1030 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+P
Sbjct: 2    GFVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG            +T QG         ++L+  +  GY  L+++ S +   ++G    
Sbjct: 62   IIGMT----------VTIQGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---P 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             +  SWL+   +  LI ++ G+ G I+R     +   A +       +F  + +Y++ Q+
Sbjct: 109  ELPQSWLRAYSSN-LIAISPGAKGEIERLLMEENRDGALEAYANLVDIFGKESVYLSAQK 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +    +++   +    +P+VAT N  +L  +D +A +VL A+  +  V     P  
Sbjct: 168  ---ENPRLFAKIETFSAEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLA 224

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P+ Y  ++ EM   +       A   T E+A RC   + +   +LPRF  KE     + 
Sbjct: 225  GPN-YFTSQEEMERDWQTDFEKRACLETGELAERCHVEIALDQHLLPRFPLKEG----QN 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR  A  GL+ R   GA        +Y++RL++EL VI  M F+ YFLIV D I++
Sbjct: 280  APDVLRQTAYDGLKERDLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++  +  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +R
Sbjct: 332  SREAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     
Sbjct: 392  RDEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 452  LQ-KALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LGS-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSKGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F+V +     YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYF 963
            +D + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y 
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYV 927

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ 
Sbjct: 928  SAHPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDD 984

Query: 1024 AKEYEANFFP 1033
            +KE  A  FP
Sbjct: 985  SKELSAVMFP 994


>gi|254456520|ref|ZP_05069949.1| DNA polymerase III, alpha subunit [Candidatus Pelagibacter sp.
            HTCC7211]
 gi|207083522|gb|EDZ60948.1| DNA polymerase III, alpha subunit [Candidatus Pelagibacter sp.
            HTCC7211]
          Length = 1138

 Score =  930 bits (2403), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1034 (39%), Positives = 640/1034 (61%), Gaps = 32/1034 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL++H+ YS+ EGA+ ++++ D   +++  ++A+ DT+NL  ALEF++K    G QP
Sbjct: 8    NFNHLKIHTQYSICEGAVKIDDLQDFAKSNKIKSLALCDTSNLCGALEFAEKISKVGTQP 67

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G Q++    D + +             + L     +GY+R+I+L S  +L +      
Sbjct: 68   IVGTQINFKFGDTVGL-------------LPLFSLNEKGYKRIIKLSSLSFLENDKLSDP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +  + L E   EG+ + +G + G     F                  F DR Y+ +QRH
Sbjct: 115  HVDFNNLLE-NNEGVAIFSGTTFGLFGELFNKGKFTEIHDLYKKLNSTFDDRFYIEIQRH 173

Query: 190  RGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +     +  +  +   ++P++ATN   +++++ +EAHD L+ + + T +++K+R  +
Sbjct: 174  NDQNELGFEKFNLNKSLELKIPIIATNEVFYINQDMHEAHDALICIGNKTYINEKNRKHL 233

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +  HY K+ SEM  +F+DLPEALEN      RC+F      PILP    +E        +
Sbjct: 234  SNQHYFKSNSEMSELFADLPEALENNYNFPLRCNFRPLFSNPILPNISSEEG----GNAD 289

Query: 309  NELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            + L+  +++GL+++        +  +    +  DY+ RL+ EL++I  MK+S YFLIV+D
Sbjct: 290  DLLKKDSLSGLKIKFNKIFGIKENELDNDKNYLDYKDRLNHELSIIIEMKYSSYFLIVSD 349

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I+WAK N+IPVGPGRGSGAGS+ A+ L+ITD+DP++F+L+FERFLNPDR+SMPDFDIDF
Sbjct: 350  YIKWAKNNDIPVGPGRGSGAGSLVAWCLSITDVDPIKFNLIFERFLNPDRISMPDFDIDF 409

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C+++RD V  Y+  KY  + VA IITFG L+A+  +RDVGR L +PY  VD + K+IP D
Sbjct: 410  CEEKRDLVFEYLTKKY-QDSVAHIITFGKLKARMVVRDVGRVLGLPYGFVDSISKMIPFD 468

Query: 483  PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P+ P +L Q I+ + R ++    D  V +L ++S KLEGL R+ +THAAG+VI D+ L++
Sbjct: 469  PSRPQTLTQCISGEPRLQKLINEDQRVKKLTDLSLKLEGLNRNVATHAAGVVIADKKLTE 528

Query: 542  LVPMYRDVRSDL--PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +VP+Y+D  S+L  P TQF+M   E AGL+KFDFLGLKTLT++  +   + +     D+ 
Sbjct: 529  VVPLYKDASSELLLPSTQFDMYSAENAGLVKFDFLGLKTLTVINNTQKLVKKIDKNFDIE 588

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I ++D + + LL++  T+G+FQ+ESSGMR+AL  M+P+ IEDIIALV+LYRPGP+ NI 
Sbjct: 589  KISYEDQKVFELLSSGNTVGLFQVESSGMREALVQMKPNHIEDIIALVALYRPGPMSNIS 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             YN+ K+G++    +HPL++ +LK T GVIIYQEQVMQIAQ LSG++  +AD+LRRAMGK
Sbjct: 649  TYNDCKHGRQTPDYLHPLLEDILKPTYGVIIYQEQVMQIAQKLSGFTAGQADLLRRAMGK 708

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K + E++KQK+ FI+GA +NGI+K +A  IF  +  FA+YGFNKSHAAAYA+ISYQTA++
Sbjct: 709  KKRAELEKQKQGFIAGAVQNGIAKDVAAGIFLKIEPFAEYGFNKSHAAAYAIISYQTAFL 768

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            KT+YP EF+AASMT+++ N  K+ +F ++ ++ NI+++ P++N    DF+   ++ YY+L
Sbjct: 769  KTYYPKEFIAASMTMDISNQNKLSEFYEELKRLNIKVVRPNINECYADFRTEGDKFYYAL 828

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
              IK VG     ++++    +  FDS+ DF  RV+ K +N+  LE LV AGA D    +R
Sbjct: 829  GGIKAVGYEAISNVIKERSENGKFDSINDFLKRVNPKDMNKLQLEGLVKAGAFDNLNNNR 888

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              L  S+ N     + +  N++    ++F+ ++   +D          N   R   E   
Sbjct: 889  QSLFNSIPNFILKTKNIFDNKSANQIDLFSEDESLQNDITH--DIEDWNFEERLSKEFEA 946

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +GF+ S HPL+ +  I     IK Y    +     +  +AA ++  Q++KT KG+    +
Sbjct: 947  VGFFISNHPLNQFTEIFDDYKIKDYSNFNSNDEIKDANIAATLLKLQERKTAKGNAYAVL 1006

Query: 1019 TFSEPAKEYEANFF 1032
              ++    +E   F
Sbjct: 1007 KLTDLNSVFELFIF 1020


>gi|326563512|gb|EGE13771.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis 12P80B1]
          Length = 1240

 Score =  930 bits (2403), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1094 (35%), Positives = 584/1094 (53%), Gaps = 100/1094 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    A I+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIDASIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124
            IIG ++ +         +  K       S++L   +  GYQ L+ L+S  Y         
Sbjct: 62   IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 125  --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT      I +    ++   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILT--HRSEIAQPLLSHNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE-------------EDYEAHD 229
            Y+ ++R +  D       +  A    + ++A N+  F+                D++AH+
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232

Query: 230  VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +A+   ++   RPR   +  Y K++ +M  +F+DLP+A+ENT  +A RC+  + + 
Sbjct: 233  ARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNVTITLG 292

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLD 342
              +LP F   + + I    E   +  +  GL  RL       +         + Y +RLD
Sbjct: 293  INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVEERGDDWDQVRKPYDERLD 348

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L
Sbjct: 349  YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV 
Sbjct: 409  LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEISQ 516
            R    P+   DR+ K+IP  P   +   A   + + +E  L +P          + E+++
Sbjct: 469  RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKEL-LTNPDAPDHELALEIWEMAK 526

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            KLEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLGL
Sbjct: 527  KLEGLTRNVGKHAGGVLIAPNRISDFSAIYCD-GEGHPVSQYDKDDVEAVGLVKFDFLGL 585

Query: 577  KTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQ 630
            + LT+LQ ++D + Q          DL  +P DD + Y  +L    T  +FQLESSGM++
Sbjct: 586  RNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKK 645

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLK 683
             L  ++P  IED+IA+ +LYRPGP+++ +V  + +RK+G +++   HP     L+ P L+
Sbjct: 646  YLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLE 705

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I  
Sbjct: 706  STYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDG 765

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ 
Sbjct: 766  GLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVV 825

Query: 804  KFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP 861
                D R  F + I+PPSVN     F V D +   Y L A+KGVG      I+ A  D  
Sbjct: 826  FLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGA 885

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSL 905
            F  L DFC+RVD KK+ +R LE+L+ AG  D    +                R  L + L
Sbjct: 886  FKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQL 945

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
                  A    +N+     ++F     +      LE         R   EQ  LG Y +G
Sbjct: 946  PEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTG 1004

Query: 966  HPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW------V 1018
            HPLD Y+  L     +K   +   T +G    +A ++               +      V
Sbjct: 1005 HPLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDV-----------AFFGERIVV 1052

Query: 1019 TFSEPAKEYEANFF 1032
               +     E + +
Sbjct: 1053 KLDDGKGRIEMSCY 1066


>gi|326560771|gb|EGE11138.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis 103P14B1]
          Length = 1240

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1094 (35%), Positives = 585/1094 (53%), Gaps = 100/1094 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +     GI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGDGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124
            IIG ++ +         +  K       S++L   +  GYQ L+ L+S  Y         
Sbjct: 62   IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 125  --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT      I +    ++   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILT--HRSEIAQPLLSHNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE-------------EDYEAHD 229
            Y+ ++R +  D       +  A    + ++A N+  F+                D++AH+
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232

Query: 230  VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +A+S  ++   RPR   +  Y K++ +M  +F+DLP+A+ENT  +A RC+  + + 
Sbjct: 233  ARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNVTITLG 292

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI------AKGYHAQDYRQRLD 342
              +LP F   + + I    E   +  +  GL  RL +               + Y +RLD
Sbjct: 293  INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L
Sbjct: 349  YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV 
Sbjct: 409  LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEISQ 516
            R    P+   DR+ K+IP  P   +   A   + + +E  L +P          + E+++
Sbjct: 469  RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKEL-LTNPDAPDHELALEIWEMAK 526

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            KLEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLGL
Sbjct: 527  KLEGLTRNVGKHAGGVLIAPNRISDFSAIYCD-GEGHPVSQYDKDDVEAVGLVKFDFLGL 585

Query: 577  KTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQ 630
            + LT+LQ ++D + Q          DL  +P DD + Y  +L    T  +FQLESSGM++
Sbjct: 586  RNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKK 645

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLK 683
             L  ++P  IED+IA+ +LYRPGP+++ +V  + +RK+G +++   HP     L+ P L+
Sbjct: 646  YLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLE 705

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I  
Sbjct: 706  STYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDG 765

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ 
Sbjct: 766  GLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVV 825

Query: 804  KFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP 861
                D R  F + I+PPSVN     F V D +   Y L A+KGVG      I+ A  D  
Sbjct: 826  FLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGA 885

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSL 905
            F  L DFC+RVD KK+ +R LE+L+ AG  D    +                R  L + L
Sbjct: 886  FKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQL 945

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
                  A    +N+     ++F     +      LE         R   EQ  LG Y +G
Sbjct: 946  PEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTG 1004

Query: 966  HPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW------V 1018
            HPLD Y+  L     +K   +   T +G    +A ++               +      V
Sbjct: 1005 HPLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDV-----------AFFGERIVV 1052

Query: 1019 TFSEPAKEYEANFF 1032
               +     E + +
Sbjct: 1053 KLDDGKGRIEMSCY 1066


>gi|194333751|ref|YP_002015611.1| DNA polymerase III subunit alpha [Prosthecochloris aestuarii DSM 271]
 gi|194311569|gb|ACF45964.1| DNA polymerase III, alpha subunit [Prosthecochloris aestuarii DSM
            271]
          Length = 1190

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1070 (34%), Positives = 567/1070 (52%), Gaps = 60/1070 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YS+    +    +          ++A+TD + +F+  E    A  AG++ 
Sbjct: 5    DFVHLHTHTHYSMQSSPIFPKELFSACKKAGMESVAVTDYSAMFNMPELFSLASDAGVKL 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ +     L+            PS++LLV   EGY+ L  L+SR         + 
Sbjct: 65   IIGSEVYL-----LEQDAHHNGRHSVSPSLILLVKNEEGYKNLCILLSRAAREGFVNATP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +  S L+E    GLI L+G  +G I RA    +   A      +  +FGD  Y+ LQRH
Sbjct: 120  HVDSSLLKEYHA-GLICLSGYYAGRIGRALLAGNRDEAASFTAFYHDIFGDDFYLELQRH 178

Query: 190  RG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +D    S  + LA  H + LVATNN  +L ++D   +  ++A+     +S  +   +
Sbjct: 179  FATFDDQLNSDTIALAEQHGVQLVATNNVHYLQKKDAGRYRAMVAIRTKERLSSSNLQCL 238

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               +HY K+  EM S+FS+    L NT  IA +CS++     P LP F+  E      +E
Sbjct: 239  PNSEHYFKSSDEMASLFSNEHHELSNTAAIAAKCSYVFCQQEPRLPHFLLPEG---FSDE 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR+    G   + A    ++G   Q    R++ EL VI  M FS YFLIV+D I  +
Sbjct: 296  AEYLRHLTYEGAREKYA-DPESQGLTWQQVEDRIEKELGVIISMGFSSYFLIVSDLIAAS 354

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++    VGPGRGS AGS+ AY   IT IDPL++ LLFERFLNP+R+SMPD DIDF    +
Sbjct: 355  RRLGYSVGPGRGSAAGSIIAYLTGITRIDPLKYKLLFERFLNPERLSMPDIDIDFTPVGK 414

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
              V+ Y  +KYG + VA+++  G+L A+AA+RD GR L++P  +VDRL KL+P+ P   +
Sbjct: 415  QRVLDYTVDKYGDDSVAKVVAIGTLGARAAIRDAGRVLEVPLQEVDRLAKLVPSKPGTTL 474

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY- 546
              Q + + +  RE   +      L++ +  LEG  R+ S HA  +VI D PL + VP+Y 
Sbjct: 475  Q-QGLDEVNELRELVESSSQNSTLMDYALALEGRARNVSMHAGAVVITDGPLEEQVPLYV 533

Query: 547  --------------------------RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
                                       +      VTQF+  WIE AGL+K D+LGL+TL 
Sbjct: 534  SNKIETEARKFADEYNEDELERGALKSNSDEKQVVTQFDKNWIETAGLLKIDYLGLETLA 593

Query: 581  LLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++ ++L  + +R    ++L  +P D+ + + +       GIFQ ES GM+  +  +QP  
Sbjct: 594  VIDETLHLIKKRHAEVIELETVPMDNKKAFRIFQEGKMAGIFQFESQGMQNYMMQLQPTQ 653

Query: 640  IEDIIALVSLYRPGPI--------DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            I DIIA+ +LYRPG +        + + ++ +RK+ +E I  +HP+++ +LKET GVI+Y
Sbjct: 654  IGDIIAMSALYRPGALNARVDPKRNAVDLFVDRKHNREPIDYMHPMLEEILKETYGVIVY 713

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQI+Q++ G+SL++AD LR+AMGKK  E M K K  F+ GA   G+   +A  IF+
Sbjct: 714  QEQVMQISQVMGGFSLAKADNLRKAMGKKKPEIMQKFKADFVEGAVNQGVHDKLANRIFD 773

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            L+A+FA YGFNKSH+AAY V++Y TA++K HYP EF+ A +  E+ +  ++K    +AR 
Sbjct: 774  LMAEFAGYGFNKSHSAAYGVLAYWTAYLKAHYPGEFMTAILNSEIGDTARMKHLTDEARS 833

Query: 812  FNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIM--EASADKPFDSL 865
            FNI I+PP +NT    F +    G   I   L+AIK VG   AR ++       K + +L
Sbjct: 834  FNISILPPDINTSDALFSIDDVDGLPAIRVGLSAIKQVG-NAARAVVTSRLRRKKEYVNL 892

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             D  + VD + +NR+ LE L+ AGALD    +R +L+ ++D   K+ Q   ++ T     
Sbjct: 893  FDLTASVDLRAMNRKALECLILAGALDSIDPNRAKLIANIDKAIKFGQLQNRSVTLGQCG 952

Query: 926  IFAHEKGTFSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
             F+ +            ++       S + + E++++GFY S HPLD ++          
Sbjct: 953  FFSDDNAGGMQDSLYPDMDPADPMPDSEKLQAEKKLVGFYLSRHPLDPFRRDWEAFANLH 1012

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++         ++  +VVS +  + RKG+++ +    + + + +   F
Sbjct: 1013 L-DARNVQPSRQYKIIGVVVSTKPHQDRKGNQMLFGVIEDFSGKADFTVF 1061


>gi|326559880|gb|EGE10280.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis 7169]
          Length = 1240

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1094 (35%), Positives = 586/1094 (53%), Gaps = 100/1094 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    AGI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124
            IIG ++ +         +  K       S++L   +  GYQ L+ L+S  Y         
Sbjct: 62   IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 125  --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT      I +    ++   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILT--HRSEIAQPLLSHNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE-------------EDYEAHD 229
            Y+ ++R +  D       +  A    + ++A N+  F+                D++AH+
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232

Query: 230  VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +A+S  ++   RPR   +  Y K++ +M  +F+DLP+A++NT  +A RC+  + + 
Sbjct: 233  ARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNVTITLG 292

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI------AKGYHAQDYRQRLD 342
              +LP F   + + I    E   +  +  GL  RL +               + Y +RLD
Sbjct: 293  INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L
Sbjct: 349  YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV 
Sbjct: 409  LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEISQ 516
            R    P+   DR+ K+IP  P   +   A   + + +E  L +P          + E+++
Sbjct: 469  RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKEL-LTNPDAPDHELALEIWEMAK 526

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            KLEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLGL
Sbjct: 527  KLEGLTRNVGKHAGGVLIAPNRISDFSAIYCD-GEGHPVSQYDKDDVEAVGLVKFDFLGL 585

Query: 577  KTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQ 630
            + LT+LQ ++D + Q          DL  +P DD + Y  +L    T  +FQLESSGM++
Sbjct: 586  RNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKK 645

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLK 683
             L  ++P  IED+IA+ +LYRPGP+++ +V  + +RK+G +++   HP     L+ P L+
Sbjct: 646  YLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLE 705

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I  
Sbjct: 706  STYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDG 765

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ 
Sbjct: 766  GLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVV 825

Query: 804  KFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP 861
                D R  F + I+PPSVN     F V D +   Y L A+KGVG      I+ A  D  
Sbjct: 826  FLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGA 885

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSL 905
            F  L DFC+RVD KK+ +R LE+L+ AG  D    +                R  L + L
Sbjct: 886  FKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQL 945

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
                  A    +N+     ++F     +      LE         R   EQ  LG Y +G
Sbjct: 946  PEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTG 1004

Query: 966  HPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW------V 1018
            HPLD Y+  L     +K   +   T +G    +A ++               +      V
Sbjct: 1005 HPLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDV-----------AFFGERIVV 1052

Query: 1019 TFSEPAKEYEANFF 1032
               +     E + +
Sbjct: 1053 KLDDGKGRIEMSCY 1066


>gi|326569634|gb|EGE19686.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis BC1]
          Length = 1240

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1094 (35%), Positives = 586/1094 (53%), Gaps = 100/1094 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    AGI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124
            IIG ++ +         +  K       S++L   +  GYQ L+ L+S  Y         
Sbjct: 62   IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 125  --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT      I +    ++   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILT--HRSEIAQPLLSHNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE-------------EDYEAHD 229
            Y+ ++R +  D       +  A    + ++A N+  F+                D++AH+
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232

Query: 230  VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +A+S  ++   RPR   +  Y K++ +M  +F+DLP+A++NT  +A RC+  + + 
Sbjct: 233  ARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNVTITLG 292

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI------AKGYHAQDYRQRLD 342
              +LP F   + + I    E   +  +  GL  RL +               + Y +RLD
Sbjct: 293  INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L
Sbjct: 349  YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV 
Sbjct: 409  LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEISQ 516
            R    P+   DR+ K+IP  P   +   A   + + +E  L +P          + E+++
Sbjct: 469  RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKEL-LTNPDAPDHELALEIWEMAK 526

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            KLEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLGL
Sbjct: 527  KLEGLTRNVGKHAGGVLIAPNRISDFSAIYCD-GEGHPVSQYDKDDVEAVGLVKFDFLGL 585

Query: 577  KTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQ 630
            + LT+LQ ++D + Q          DL  +P DD + Y  +L    T  +FQLESSGM++
Sbjct: 586  RNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKK 645

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLK 683
             L  ++P  IED+IA+ +LYRPGP+++ +V  + +RK+G +++   HP     L+ P L+
Sbjct: 646  YLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLE 705

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I  
Sbjct: 706  STYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVEGAIEQNIDG 765

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ 
Sbjct: 766  GLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVV 825

Query: 804  KFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP 861
                D R  F + I+PPSVN     F V D +   Y L A+KGVG      I+ A  D  
Sbjct: 826  FLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGA 885

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSL 905
            F  L DFC+RVD KK+ +R LE+L+ AG  D    +                R  L + L
Sbjct: 886  FKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQL 945

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
                  A    +N+     ++F     +      LE         R   EQ  LG Y +G
Sbjct: 946  PEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTG 1004

Query: 966  HPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW------V 1018
            HPLD Y+  L     +K   +   T +G    +A ++               +      V
Sbjct: 1005 HPLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDV-----------AFFGERIVV 1052

Query: 1019 TFSEPAKEYEANFF 1032
               +     E + +
Sbjct: 1053 KLDDGKGRIEMSCY 1066


>gi|254931514|ref|ZP_05264873.1| DNA polymerase III [Listeria monocytogenes HPB2262]
 gi|293583067|gb|EFF95099.1| DNA polymerase III [Listeria monocytogenes HPB2262]
 gi|328474924|gb|EGF45724.1| DNA polymerase III, alpha subunit [Listeria monocytogenes 220]
          Length = 1108

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1030 (35%), Positives = 577/1030 (56%), Gaps = 43/1030 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+P
Sbjct: 2    GFVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG            +T QG         ++L+  +  GY  L+++ S +   ++G    
Sbjct: 62   IIGMT----------VTIQGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---P 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             +  SWL+   +  LI ++ G+ G I+R     + + A +      ++F  + +Y++ Q+
Sbjct: 109  ELPQSWLRAYSSN-LIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQK 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P  
Sbjct: 168  ---ENPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLA 224

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P+ Y  ++ EM   +       A   T E+A RC   + +   +LPRF   E     + 
Sbjct: 225  GPN-YFTSQEEMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNEG----QN 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I++
Sbjct: 280  ASDVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++  I  GPGRGS AG++ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +R
Sbjct: 332  SREAGILTGPGRGSAAGALVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     
Sbjct: 392  RDEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 452  LQ-KALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LGS-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F+V +     YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYF 963
            +D + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y 
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYV 927

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ 
Sbjct: 928  SAHPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDD 984

Query: 1024 AKEYEANFFP 1033
            +KE  A  FP
Sbjct: 985  SKELSAVMFP 994


>gi|326576416|gb|EGE26325.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis O35E]
          Length = 1240

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1094 (35%), Positives = 586/1094 (53%), Gaps = 100/1094 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    AGI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124
            IIG ++ +         +  K       S++L   +  GYQ L+ L+S  Y         
Sbjct: 62   IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 125  --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT      I +    ++   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILT--HRSEIAQPLLSHNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE-------------EDYEAHD 229
            Y+ ++R +  D       +  A    + ++A N+  F+                D++AH+
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232

Query: 230  VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +A+S  ++   RPR   +  Y K++ +M  +F+DLP+A++NT  +A RC+  + + 
Sbjct: 233  ARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNVTITLG 292

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI------AKGYHAQDYRQRLD 342
              +LP F   + + I    E   +  +  GL  RL +               + Y +RLD
Sbjct: 293  INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L
Sbjct: 349  YELDIILKMGFPGYFLIVTDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV 
Sbjct: 409  LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEISQ 516
            R    P+   DR+ K+IP  P   +   A   + + +E  L +P          + E+++
Sbjct: 469  RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKEL-LTNPDAPDHELALEIWEMAK 526

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            KLEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLGL
Sbjct: 527  KLEGLTRNVGKHAGGVLIAPNRISDFSAIYCD-GEGHPVSQYDKDDVEAVGLVKFDFLGL 585

Query: 577  KTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQ 630
            + LT+LQ ++D + Q          DL  +P DD + Y  +L    T  +FQLESSGM++
Sbjct: 586  RNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKK 645

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLK 683
             L  ++P  IED+IA+ +LYRPGP+++ +V  + +RK+G +++   HP     L+ P L+
Sbjct: 646  YLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLE 705

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I  
Sbjct: 706  STYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVEGAIEQNIDG 765

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ 
Sbjct: 766  GLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVV 825

Query: 804  KFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP 861
                D R  F + I+PPSVN     F V D +   Y L A+KGVG      I+ A  D  
Sbjct: 826  FLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGA 885

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSL 905
            F  L DFC+RVD KK+ +R LE+L+ AG  D    +                R  L + L
Sbjct: 886  FKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQL 945

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
                  A    +N+     ++F     +      LE         R   EQ  LG Y +G
Sbjct: 946  PEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTG 1004

Query: 966  HPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW------V 1018
            HPLD Y+  L     +K   +   T +G    +A ++               +      V
Sbjct: 1005 HPLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDV-----------AFFGERIVV 1052

Query: 1019 TFSEPAKEYEANFF 1032
               +     E + +
Sbjct: 1053 KLDDGKGRIEMSCY 1066


>gi|326576004|gb|EGE25927.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis CO72]
          Length = 1240

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1094 (35%), Positives = 584/1094 (53%), Gaps = 100/1094 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    A I+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIDASIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124
            IIG ++ +         +  K       S++L   +  GYQ L+ L+S  Y         
Sbjct: 62   IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 125  --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT      I +    ++   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILT--HRSEIAQPLLSHNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE-------------EDYEAHD 229
            Y+ ++R +  D       +  A    + ++A N+  F+                D++AH+
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232

Query: 230  VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +A+   ++   RPR   +  Y K++ +M  +F+DLP+A+ENT  +A RC+  + + 
Sbjct: 233  ARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNVTITLG 292

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI------AKGYHAQDYRQRLD 342
              +LP F   + + I    E   +  +  GL  RL +               + Y +RLD
Sbjct: 293  INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L
Sbjct: 349  YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV 
Sbjct: 409  LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEISQ 516
            R    P+   DR+ K+IP  P   +   A   + + +E  L +P          + E+++
Sbjct: 469  RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKEL-LTNPDAPDHELALEIWEMAK 526

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            KLEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLGL
Sbjct: 527  KLEGLTRNVGKHAGGVLIAPNRISDFSAIYCD-GEGHPVSQYDKDDVEAVGLVKFDFLGL 585

Query: 577  KTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQ 630
            + LT+LQ ++D + Q          DL  +P DD + Y  +L    T  +FQLESSGM++
Sbjct: 586  RNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKK 645

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLK 683
             L  ++P  IED+IA+ +LYRPGP+++ +V  + +RK+G +++   HP     L+ P L+
Sbjct: 646  YLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLE 705

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I  
Sbjct: 706  STYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDG 765

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ 
Sbjct: 766  GLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVV 825

Query: 804  KFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP 861
                D R  F + I+PPSVN     F V D +   Y L A+KGVG      I+ A  D  
Sbjct: 826  FLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGA 885

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSL 905
            F  L DFC+RVD KK+ +R LE+L+ AG  D    +                R  L + L
Sbjct: 886  FKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQL 945

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
                  A    +N+     ++F     +      LE         R   EQ  LG Y +G
Sbjct: 946  PEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTG 1004

Query: 966  HPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW------V 1018
            HPLD Y+  L     +K   +   T +G    +A ++               +      V
Sbjct: 1005 HPLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDV-----------AFFGERIVV 1052

Query: 1019 TFSEPAKEYEANFF 1032
               +     E + +
Sbjct: 1053 KLDDGKGRIEMSCY 1066


>gi|254828191|ref|ZP_05232878.1| DNA polymerase III [Listeria monocytogenes FSL N3-165]
 gi|258600578|gb|EEW13903.1| DNA polymerase III [Listeria monocytogenes FSL N3-165]
          Length = 1108

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1030 (35%), Positives = 581/1030 (56%), Gaps = 43/1030 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+P
Sbjct: 2    GFVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG            +T QG         ++L+  +  GY +L+++ S +   ++G    
Sbjct: 62   IIGMT----------VTIQGYLNPINSYELILIAESTAGYHQLLKIASAIQTREEG---P 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             +  SWL+   +  LI+++ G+ G I+R       + A +      ++F  + +Y++ Q+
Sbjct: 109  ELPQSWLRAYSS-DLIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQK 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +    +++   +    +P+VAT N  +L  +D +A +VL A+  +  V     P  
Sbjct: 168  ---ENPRLFAKIETFSSEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLA 224

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P+ Y  ++ EM   +  +   +A   T E+A RC   + +   +LPRF   E     + 
Sbjct: 225  GPN-YFTSQDEMERDWQTAFEKQACLETGELANRCHVEIALDQHLLPRFPLNEG----QN 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I++
Sbjct: 280  ASDVLRQTAFAGLKERNLLGM--------EYQERLEYELKVITEMGFADYFLIVWDVIRY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++  +  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +R
Sbjct: 332  SREAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     
Sbjct: 392  RDEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 452  LQ-KALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LGS-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP +  +L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S+  A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F++ +   I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETAIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYF 963
            +D + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y 
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYV 927

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ 
Sbjct: 928  SAHPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDD 984

Query: 1024 AKEYEANFFP 1033
            +KE  A  FP
Sbjct: 985  SKELSAVMFP 994


>gi|46907805|ref|YP_014194.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 4b
            F2365]
 gi|46881074|gb|AAT04371.1| DNA polymerase III, alpha subunit [Listeria monocytogenes serotype 4b
            str. F2365]
          Length = 1108

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1030 (35%), Positives = 578/1030 (56%), Gaps = 43/1030 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+P
Sbjct: 2    GFVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG            +T QG         ++L+  +  GY  L+++ S +   ++G    
Sbjct: 62   IIGMT----------VTIQGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---P 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             +  SWL+   +  LI ++ G+ G I+R     + + A +      ++F  + +Y++ Q+
Sbjct: 109  ELPQSWLRAYSSN-LIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQK 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P  
Sbjct: 168  ---ENPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLA 224

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P+ Y  ++ +M   +       A   T E+A RC   + ++  +LPRF   E     + 
Sbjct: 225  GPN-YFTSQEDMERDWQTEFEKRACLETGELADRCHVEIALNQHLLPRFPLNEG----QN 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I++
Sbjct: 280  ASDVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +R
Sbjct: 332  SREAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     
Sbjct: 392  RDEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 452  LQ-KALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LGS-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F+V +     YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYF 963
            +D + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y 
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYV 927

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ 
Sbjct: 928  SAHPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDD 984

Query: 1024 AKEYEANFFP 1033
            +KE  A  FP
Sbjct: 985  SKELSAVMFP 994


>gi|224499768|ref|ZP_03668117.1| hypothetical protein LmonF1_08799 [Listeria monocytogenes Finland
            1988]
          Length = 1108

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1030 (35%), Positives = 581/1030 (56%), Gaps = 43/1030 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+P
Sbjct: 2    GFVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG            +T QG         ++L+  +  GY +L+++ S +   ++G    
Sbjct: 62   IIGMT----------VTIQGYLNPINSYELILIAESTAGYHQLLKIASAIQTREEG---P 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             +  SWL+   +  LI+++ G+ G I+R       + A +      ++F  + +Y++ Q+
Sbjct: 109  ELPQSWLRAYSS-DLIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQK 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +    +++   +    +P+VAT N  +L  +D +A +VL A+  +  V     P  
Sbjct: 168  ---ENPRLFAKIETFSSEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLA 224

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P+ Y  ++ EM   +  +   +A   T E+A RC   + +   +LPRF   E     + 
Sbjct: 225  GPN-YFTSQDEMERDWQTAFEKQACLETGELANRCHVEIALDQHLLPRFPLNEG----QN 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I++
Sbjct: 280  ASDVLRQTAFAGLKERNLLGM--------EYQERLEYELKVITEMGFADYFLIVWDVIRY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++  +  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +R
Sbjct: 332  SREAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     
Sbjct: 392  RDEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 452  LQ-KALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LGS-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP +  +L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S+  A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F++ +   I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYF 963
            +D + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y 
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYV 927

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ 
Sbjct: 928  SAHPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDD 984

Query: 1024 AKEYEANFFP 1033
            +KE  A  FP
Sbjct: 985  SKELSAVMFP 994


>gi|258648347|ref|ZP_05735816.1| putative DNA polymerase III alpha subunit [Prevotella tannerae ATCC
            51259]
 gi|260851512|gb|EEX71381.1| putative DNA polymerase III alpha subunit [Prevotella tannerae ATCC
            51259]
          Length = 1256

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/1138 (31%), Positives = 570/1138 (50%), Gaps = 126/1138 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---- 65
             FVHL VHS YS+L+G  S+ N+L K  AD    +A+TD  N+    EF  +A  A    
Sbjct: 3    DFVHLHVHSQYSILDGQASIGNLLKKAVADGMQGMALTDHGNMMGVKEFYNEAKKAIGKA 62

Query: 66   ------------------------GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
                                      +PI+GC++ +       + ++      +   +++
Sbjct: 63   KESLKKAQEEGGSEEQIAKLQRAAAFKPILGCEMYVA---RRTLKDKKDKTDQSGHHLIV 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
            L   + GY  LI+LVS+ ++ D      R     L +   EGLI+ +    G I      
Sbjct: 120  LAKNSVGYHNLIKLVSKAWV-DGFYMRPRTDHEELAKY-REGLIVCSACLGGEIPSNILK 177

Query: 162  NSSQVAEKRLLTFKKLFGDRLYVNLQRHR-------------GYDRYRESQVVQLAYTHE 208
            +    A++    FK +FGD  Y+ LQRH              G        ++QLA   +
Sbjct: 178  DDIDKAKEAARWFKSIFGDDYYLELQRHEVKDPSIQANREVYGLQTKVNEVLIQLAKELD 237

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
            + L+ +N+  F++EED EAHD L+ ++    +    R   T   + K + EM  IF D+P
Sbjct: 238  IKLICSNDVHFVNEEDGEAHDRLICLSTGKDLDDPKRLLYTKQEWFKTQREMNKIFEDIP 297

Query: 269  EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE---------------------- 306
            EA+ NT+EI  +       HAPI+P F   E    ++E                      
Sbjct: 298  EAMRNTIEICNKVELYSIDHAPIMPNFPIPESFGTEEEYRSRLTEEDLFNEFTRDENGKE 357

Query: 307  -------------------------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
                                     E + L   A  G + R  +        + + ++R+
Sbjct: 358  IVSREEGLKKIEKLGGFNRLYRIKFEADYLAKLAYDGAKRRYGE------PLSDEVKERV 411

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAK-KNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            +FEL+++  M F GYFLIV D+I  A+ +  + VGPGRGS AGS  AY L IT IDP+++
Sbjct: 412  NFELHIMKVMGFPGYFLIVQDYINTARNELGVSVGPGRGSAAGSAVAYCLGITQIDPIKY 471

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNPDR+S+PD D+DF  D R  V+++V +KYG E  A IIT+G++  K+A++D
Sbjct: 472  DLLFERFLNPDRISLPDIDVDFDDDGRGRVLQWVTDKYGAENCAHIITYGTMATKSAIKD 531

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQ--------AIADDSRFREARLAD-PSVDRL 511
            V R  ++P S+ +RLCKLIP+      S +        AIA     REA  +D P +   
Sbjct: 532  VARVERLPLSESNRLCKLIPDKLPEDSSGKSPKLTLDNAIAAIPGLREAEASDNPLLRDT 591

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAG 567
            +  +++LEG  R+   HA G +I    +S  VP+     ++    L  TQ+  + IE+ G
Sbjct: 592  IRYARQLEGNVRNTGVHACGFIICKDKISDWVPISTADDKETGEKLRCTQYEGRVIEETG 651

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            LIK DFLGLK L++++++L+ +    G+ +D+  I   D  TY L +   T+G FQ ES+
Sbjct: 652  LIKMDFLGLKNLSIIKEALENIKLSLGIDLDIDKIDISDKATYQLFSDGNTIGTFQFEST 711

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            GM+  L  +QP   ED+IA+ +LYRPGP+  I  +  RK G+E I    P ++  LKET 
Sbjct: 712  GMQGHLRNLQPSTFEDLIAMNALYRPGPMQYIPKFIQRKKGEETITYDLPCMEKYLKETY 771

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+ +YQEQVM +++ ++ ++  E+D LR+AMGKK+ ++++    +FISG   NG  + I 
Sbjct: 772  GITVYQEQVMLLSREIANFTRGESDTLRKAMGKKLIDKLNHMYPKFISGGKANGYDEKIL 831

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              I++    FA Y FNKSHA  Y+ I+YQT ++K +YP +++A +M+  + N+ +I KF 
Sbjct: 832  EKIWDDWKAFASYAFNKSHATCYSWIAYQTGYLKANYPSQYMAGAMSRALSNITEITKFM 891

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDS 864
             ++++  I  + P +N   + F V     I + L AIKGVG+    +I++    +  F  
Sbjct: 892  DESKRMGINTLGPDINESLMKFSVNHRGDIRFGLGAIKGVGSQAVENILKEREVNGQFSD 951

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEK 917
            + +   R++    NR+ LE+L  AGA D FG +R Q ++        LD + +Y    + 
Sbjct: 952  IYNVMERINLTTCNRKTLENLAIAGAFDSFGIAREQFVEIDESGGDFLDALIRYGTQYKI 1011

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            +++    ++F  E      K      S    +  R   E+ ++G Y SGHPLD YK IL 
Sbjct: 1012 DQSQAQNSLFGEEAAAIITKPLPAPVSQPWTNLERLNKERDLIGIYISGHPLDKYKIILN 1071

Query: 977  KMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            K+      +   +  +   +I    +V   ++  T++    G +   +    YE  F+
Sbjct: 1072 KVCTTTVADLDNLNALADQDISFGGIVTDTREGMTKRDKPYGVIKLEDYKGAYELMFW 1129


>gi|269216173|ref|ZP_06160027.1| DNA polymerase III, alpha subunit [Slackia exigua ATCC 700122]
 gi|269130432|gb|EEZ61510.1| DNA polymerase III, alpha subunit [Slackia exigua ATCC 700122]
          Length = 1194

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1058 (32%), Positives = 540/1058 (51%), Gaps = 46/1058 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA--- 64
            +  FVHL  H+ YS+L+GA  + +++ + A    PA+AITD   +    E      A   
Sbjct: 22   AMPFVHLHNHTEYSMLDGATHVKDMVRRAADLDMPAVAITDHGVMCGVPELCDACAAVER 81

Query: 65   ---AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
                 ++PI GC++       +    +       +  +++L   +EGY  L+ LVS  ++
Sbjct: 82   ETGKKVKPIYGCEIYFTEDPEVGTKKRS-----PLYHMIMLAKNSEGYHNLLHLVSESHM 136

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GD 180
             D      R  L  +++   +G++  +   +G I R         A +   TFK +F   
Sbjct: 137  -DNYYYKPRTTLDMIKK-HAKGIVATSACIAGIIPRRLRERDVAGAREWAQTFKDIFEPG 194

Query: 181  RLYVNLQRHRGYDRY------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
              Y+ LQ                 Q+  LA+   L  +ATN+  +L+ ED +A D+++ +
Sbjct: 195  DFYIELQDQGISTEEGFSQHELNVQLSNLAHDLGLETIATNDFHYLTREDAKAQDIMLCI 254

Query: 235  AHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
               +    ++R R   D  Y+K   EM     D PEA +NTV++A +CS  L+    ILP
Sbjct: 255  GTGSNYDDENRMRFANDEFYMKTEEEMREALRDFPEACDNTVKVAEKCSVELE-RDSILP 313

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI-----AKGYHAQDYRQRLDFELNVI 348
            RF   E       EE   R +   GL  R                  D  +R ++E  VI
Sbjct: 314  RFPLPEG----YTEEMLFREECEKGLIHRYGNNGEITTMDELRAARPDVVERYEYEAGVI 369

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +  F  YFLIV ++I+WAK N I VGPGRGS AG++  YA+ ITD++PL   LLFERFL
Sbjct: 370  IQQGFPAYFLIVQEYIRWAKDNGIGVGPGRGSAAGAICTYAMGITDLEPLDNGLLFERFL 429

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            +P+R+ MPD D+DF    R +VI +V++ YG + +A +ITFG LQAK A+RD  R L  P
Sbjct: 430  SPERVEMPDIDVDFDDQHRQDVIDHVRDFYGADHIAGVITFGKLQAKNAVRDAARVLGHP 489

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            Y   D++CK I ++    +   A+ ++   ++    D     +++ ++ +EG  R    H
Sbjct: 490  YGVGDKICKTIGDELGITLD-DALENNVDLKKMYDDDADTRDIIDAARSIEGNIRGEGVH 548

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            A   +I   PL   VP+ RD +    +TQ++  +  + GL+K DFLGL+TL +L ++   
Sbjct: 549  ACATIICRDPLVDHVPVKRDTKGGGMITQYDGHYTPELGLLKMDFLGLRTLGVLSRACKN 608

Query: 589  LAQRG-VKVDLSLIPFDDHETYHLLT---TKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            +  R  +++    IP +D E + L+      G  G+FQ+E +        + P    DI+
Sbjct: 609  VKARHGLEIRPDEIPIEDAEAFRLMRGEMRWGMDGLFQVEGALYVSLFSRLPPRRFSDIV 668

Query: 645  ALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            A ++L RPGP+++ +V  Y    NG  +I      + P+L+ET G ++YQEQ+MQI+  +
Sbjct: 669  ASIALNRPGPLESGMVDDYVKVANGTTEIHYYDDRLRPILEETYGTMVYQEQIMQISMAM 728

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            SG+S  +AD LR+AMGKK  + M + +  +  GA +NG S  IA  I+E   KFA Y FN
Sbjct: 729  SGFSAGKADRLRKAMGKKKLDIMRQLQADWNEGAVENGYSLEIAKQIWEDAEKFAKYAFN 788

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            KSH+AAYA++  +TA++K HYP EF+AA ++  M N +++ K+        I ++PP VN
Sbjct: 789  KSHSAAYALLVMRTAYLKAHYPYEFMAAVLSSYMGNADRLIKYISSCTHSGIPVLPPDVN 848

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRV 881
            T  ++F   +  I + LA ++G+G   A+ I+ E  A+ P+ SL DF +R+D+K  NR+ 
Sbjct: 849  TSNLEFTPLEEGIRFGLAGVRGIGEAVAQSIIDEREANGPYSSLHDFVNRLDAKCYNRKT 908

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIFAH----EKGTFS 935
            LE+LV +GA D  GY+R QL+  +D+  + + A   +K+R     ++F          F 
Sbjct: 909  LEALVKSGAFDSTGYTRKQLMHFIDDTPLLESAAKRQKDRDAGQVSMFDLFADVPDSGFD 968

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNN 994
            D +        +  +    E+ +L  Y S HPL  Y+  L  +      +         N
Sbjct: 969  DDVPAPDGIEWDKRMLLAYEKEILKIYVSDHPLRPYERSLESVTKYHLGDLAEHKGDIKN 1028

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               A +V S   K TRKG+++      +     E   F
Sbjct: 1029 AVFAGLVASVTVKMTRKGTKMANFDLEDTTGHMECVCF 1066


>gi|47096787|ref|ZP_00234369.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 1/2a
            F6854]
 gi|254898259|ref|ZP_05258183.1| hypothetical protein LmonJ_00550 [Listeria monocytogenes J0161]
 gi|254912248|ref|ZP_05262260.1| DNA polymerase III [Listeria monocytogenes J2818]
 gi|254936575|ref|ZP_05268272.1| DNA polymerase III [Listeria monocytogenes F6900]
 gi|47014820|gb|EAL05771.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 1/2a
            F6854]
 gi|258609171|gb|EEW21779.1| DNA polymerase III [Listeria monocytogenes F6900]
 gi|293590225|gb|EFF98559.1| DNA polymerase III [Listeria monocytogenes J2818]
          Length = 1108

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1030 (35%), Positives = 581/1030 (56%), Gaps = 43/1030 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+P
Sbjct: 2    GFVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG            +T QG         ++L+  +  GY +L+++ S +   ++G    
Sbjct: 62   IIGMT----------VTIQGYLNPINSYELILIAESTAGYHQLLKIASAIQTREEG---P 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             +  SWL+   +  LI+++ G+ G I+R       + A +      ++F  + +Y++ Q+
Sbjct: 109  ELPQSWLRAYSS-DLIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQK 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +    +++   +    +P+VAT N  +L  +D +A +VL A+  +  V     P  
Sbjct: 168  ---ENPRLFAKIETFSSEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLA 224

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P+ Y  ++ EM   +  +   +A   T E+A RC   + +   +LPRF   E     + 
Sbjct: 225  GPN-YFTSQDEMERDWQTAFEKQACLETGELANRCHVEIALDQHLLPRFPLNEG----QN 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I++
Sbjct: 280  ASDVLRQTAFAGLKERNLLGM--------EYQERLEYELKVITEMGFADYFLIVWDVIRY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++  +  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +R
Sbjct: 332  SREAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     
Sbjct: 392  RDEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 452  LQ-KALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LGS-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP +  +L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S+  A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F++ +   I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYF 963
            +D + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y 
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYV 927

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ 
Sbjct: 928  SAHPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDD 984

Query: 1024 AKEYEANFFP 1033
            +KE  A  FP
Sbjct: 985  SKELSAVMFP 994


>gi|302388689|ref|YP_003824510.1| DNA polymerase III, alpha subunit [Thermosediminibacter oceani DSM
            16646]
 gi|302199317|gb|ADL06887.1| DNA polymerase III, alpha subunit [Thermosediminibacter oceani DSM
            16646]
          Length = 1061

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1033 (34%), Positives = 555/1033 (53%), Gaps = 36/1033 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VHS YSLL+G   L  ++ K A    PA+A+TD   L+  + F +    AGI+P
Sbjct: 2    AFCHLHVHSEYSLLDGLCRLPLLVKKAAELAMPALALTDHGGLYGMVPFYRLCLEAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +      +   +      +   +VLL    EG++ L+ LV+R ++ D      
Sbjct: 62   ILGCEVYVVEDVTCRWGKE------SFHHLVLLSENQEGFKNLLSLVTRSHV-DGFYYRP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L     +GLI L+G   G +         + AE+    +  +F  D  ++ LQ 
Sbjct: 115  RVDKKLLAS-HAKGLIALSGCIRGQVADLILRGDVKAAEEAAKEYADIFGRDNFFLELQY 173

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    ++     +  +A    + LVATN+  +L   D   H VL+AV   + + +     
Sbjct: 174  HGLAAEKKANFWMRSIAERLGIGLVATNDVHYLQPSDAGTHRVLLAVQTLSALGEAASLP 233

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                HYLK+ +EM ++F ++P ALENTV IA RC   L +    LP     E        
Sbjct: 234  GN-QHYLKSPAEMEALFREIPGALENTVAIAERCDVRLPLGGTKLPEIALPEG----VSA 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++ LR     G   R            Q+ + RL++EL+VI +  ++GYFLIV D + +A
Sbjct: 289  DDYLRKLCFQGAAARYG------RPLPQEVKDRLNYELSVIKKTGYAGYFLIVKDIVDFA 342

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +K  I VG GRGS AGS+ AY L ITD+DPL++ L+FERFLNP+R+S PD DID C   R
Sbjct: 343  RKRGIIVGAGRGSAAGSLAAYVLGITDVDPLKYGLIFERFLNPERISPPDIDIDLCHLGR 402

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EV+ Y+++++G ER+A +  F +LQA+AALRD GRAL + Y ++D  C  IP   +H  
Sbjct: 403  REVLEYIRHRFGRERIAHVGAFSTLQARAALRDTGRALGLAYEKIDAACSRIPY--SHIN 460

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A+ +          D  V R   I++KL+GL RH + H+AG+ I DRPL++ VP+ R
Sbjct: 461  LEDALKESPHLSSLVKNDAGVRRAFAIARKLQGLPRHMTQHSAGVAIADRPLTEYVPLQR 520

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                +  +TQ +M  +E+ GL+K D LGL+ LT++ ++L  +  R  + +    IP DD 
Sbjct: 521  ASGEE-IITQADMYALEELGLVKIDLLGLRFLTVIGETLKLVRDRYGIDMKPEEIPLDDE 579

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
            +TY +L    T G FQLES GMR+ L  ++P  IED+ A+++LYRPGP+ + +   +  R
Sbjct: 580  KTYMVLARGDTGGCFQLESGGMRKMLRRIKPKNIEDLSAVLALYRPGPLKSGMAEEFIAR 639

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            + G + +  IHP ++P+L++T GV +YQEQ+MQ A L+SGY+  EAD+LRRA+ KK K+E
Sbjct: 640  RQGIKPVSYIHPALEPVLRDTYGVFVYQEQLMQAACLISGYTPGEADLLRRAIAKKKKDE 699

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            ++++K RF+  A + GI +  A  +F  L  F DYGFNKSH+ +YAV++Y+T +++ H+P
Sbjct: 700  IEREKPRFLKRAVERGIDEKTAGELFATLEAFGDYGFNKSHSISYAVMAYRTVYLREHFP 759

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----RIYYSLA 840
            +E+ A+   L MD   +++ +  +AR+  I+++ P +N     F          I   LA
Sbjct: 760  LEYFASLFNLYMDTPSRLQLYLCEARRREIRLLLPDINMSGAGFVPEGGPHQRAIRAGLA 819

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             IK +G      I++A  D PF    DFC RVD + +N R LESLVF+GA D FG  R  
Sbjct: 820  LIKNLGPRGMEEILQAREDCPFTGFFDFCRRVDRRVINARALESLVFSGAFDSFGIPRPA 879

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L+ SL    K+       R      +        +    L   +    S +   E   +G
Sbjct: 880  LIISL----KWMLSGCSGRPQNQLCLLNENPDVEALAADLS-VADFTPSQKMAQEMMSMG 934

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            +Y + HP++  K    +       +         +R++ +++  +  +TR G R+ +   
Sbjct: 935  YYITAHPMEFIKGRPEETCTHTASDVEEIGEKQRVRISGILLDLRSGRTRSGERMLFARL 994

Query: 1021 SEPAKEYEANFFP 1033
             +     E   FP
Sbjct: 995  EDLTGSVELVIFP 1007


>gi|254852197|ref|ZP_05241545.1| DNA polymerase III [Listeria monocytogenes FSL R2-503]
 gi|258605503|gb|EEW18111.1| DNA polymerase III [Listeria monocytogenes FSL R2-503]
          Length = 1108

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1030 (35%), Positives = 578/1030 (56%), Gaps = 43/1030 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+P
Sbjct: 2    GFVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG            +T QG         ++L+  +  GY  L+++ S +   ++G    
Sbjct: 62   IIGMT----------VTIQGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---P 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             +  SWL+   +  LI ++ G+ G I+R     + + A +      ++F  + +Y++ Q+
Sbjct: 109  ELPQSWLRAYSSN-LIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQK 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P  
Sbjct: 168  ---ENPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLA 224

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P+ Y  ++ +M   +       A   T E+A RC   + +   +LPRF   E     + 
Sbjct: 225  GPN-YFTSQEDMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNEG----QN 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I++
Sbjct: 280  ASDVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++  I  GPGRGS AGS+ +YAL+ITD+DP+R++LLFERFLNP+R++MPD D+DF  +R
Sbjct: 332  SREAGILTGPGRGSAAGSLVSYALSITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     
Sbjct: 392  RDEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 452  LQ-KALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LGS-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F+V +     YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYF 963
            +D + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y 
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYV 927

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ 
Sbjct: 928  SAHPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDD 984

Query: 1024 AKEYEANFFP 1033
            +KE  A  FP
Sbjct: 985  SKELSAVMFP 994


>gi|16803614|ref|NP_465099.1| hypothetical protein lmo1574 [Listeria monocytogenes EGD-e]
 gi|224501486|ref|ZP_03669793.1| hypothetical protein LmonFR_03047 [Listeria monocytogenes FSL R2-561]
 gi|254831975|ref|ZP_05236630.1| hypothetical protein Lmon1_11500 [Listeria monocytogenes 10403S]
 gi|284801965|ref|YP_003413830.1| hypothetical protein LM5578_1720 [Listeria monocytogenes 08-5578]
 gi|284995107|ref|YP_003416875.1| hypothetical protein LM5923_1672 [Listeria monocytogenes 08-5923]
 gi|16411003|emb|CAC99652.1| dnaE [Listeria monocytogenes EGD-e]
 gi|284057527|gb|ADB68468.1| hypothetical protein LM5578_1720 [Listeria monocytogenes 08-5578]
 gi|284060574|gb|ADB71513.1| hypothetical protein LM5923_1672 [Listeria monocytogenes 08-5923]
          Length = 1108

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1030 (35%), Positives = 581/1030 (56%), Gaps = 43/1030 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+P
Sbjct: 2    GFVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG            +T QG         ++L+  +  GY +L+++ S +   ++G    
Sbjct: 62   IIGMT----------VTIQGYLNPINSYELILIAESTAGYHQLLKIASAIQTREEG---P 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             +  SWL+   +  LI+++ G+ G I+R       + A +      ++F  + +Y++ Q+
Sbjct: 109  ELPQSWLRAYSS-DLIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQK 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +    +++   +    +P+VAT N  +L  +D +A +VL A+  +  V     P  
Sbjct: 168  ---ENPRLFAKIETFSSEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLA 224

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P+ Y  ++ EM   +  +   +A   T E+A RC   + +   +LPRF   E     + 
Sbjct: 225  GPN-YFTSQDEMERDWQTAFEKQACLETGELANRCHVEIALDQHLLPRFPLNEG----QN 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I++
Sbjct: 280  ASDVLRQTAFAGLKERNLLGM--------EYQERLEYELKVITEMGFADYFLIVWDVIRY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++  +  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +R
Sbjct: 332  SREAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     
Sbjct: 392  RDEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 452  LQ-KALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LGS-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP +  +L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S+  A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F++ +   I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYF 963
            +D + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y 
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYV 927

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ 
Sbjct: 928  SAHPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDD 984

Query: 1024 AKEYEANFFP 1033
            +KE  A  FP
Sbjct: 985  SKELSAVMFP 994


>gi|78188863|ref|YP_379201.1| DNA polymerase III, alpha subunit [Chlorobium chlorochromatii CaD3]
 gi|78171062|gb|ABB28158.1| DNA polymerase III, alpha subunit [Chlorobium chlorochromatii CaD3]
          Length = 1189

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1072 (34%), Positives = 576/1072 (53%), Gaps = 62/1072 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F+HL  H+ YS+    +  + +     A   P IA+TD   +F+  E   +A   GI+ 
Sbjct: 2    DFIHLHTHTHYSMQSSPIFPSELFKAAKAFGMPTIAVTDYGAMFNMPELFSEAKQVGIRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ +   D  + +          PS+VLLV    GY+ L  L+SR           
Sbjct: 62   IIGSEVLLLEHDEHQTSR-----HTVSPSLVLLVKNETGYRNLCILLSRASREGFVNGMP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L++    GL+ L+   +G I RA    S   A      ++++FG   Y+ LQRH
Sbjct: 117  HVESRLLEQYHD-GLLCLSAYGAGRIGRALMAGSLDEAANFSAYYQEIFGSNFYLELQRH 175

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +D     Q++ LA    + LVATNN  +L + D   +  L+A      +S      +
Sbjct: 176  NTSFDALLNEQIIGLAQKFSIELVATNNVHYLRQNDAGCYRALVANRTKEKLSGPVSAAL 235

Query: 249  TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               +HYLK+  EM  +FS+    LENT+ IA +C+F      P LPRF      D   +E
Sbjct: 236  PGSEHYLKSAEEMQQLFSNEYGELENTLRIAEQCTFTFSDKEPALPRFPLP---DGFSDE 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR+    G   + A+ +  +G   ++ ++R++ EL VI +M FS YFLIV+D I  +
Sbjct: 293  ASYLRHLTWEGAAEKYAK-SEEEGISQEEVKERIELELGVIEKMGFSSYFLIVSDLIAAS 351

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++    VGPGRGS AGS+ AY   IT +DPLR+ LLFERFLNP+R+SMPD DIDF    +
Sbjct: 352  RRMGYSVGPGRGSAAGSIVAYLTGITRVDPLRYKLLFERFLNPERLSMPDIDIDFTPVGK 411

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +V+ Y   KYG + VA++I  G+L AKAA+RD GR L++P   VD+L KL+P  P   +
Sbjct: 412  QKVLEYTVEKYGADSVAKVIAIGTLGAKAAIRDAGRVLEVPLPLVDKLAKLVPTKPGITL 471

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+ D    RE   + P +  L++ ++ +EG  R+ S HA  +VI D  L + VP+Y 
Sbjct: 472  E-KALTDSRDLREMAESTPELKTLMQYARSMEGRARNVSMHAGAVVITDGALEEQVPLYV 530

Query: 548  DVRSDL-----------------------------PVTQFNMKWIEKAGLIKFDFLGLKT 578
              + +                               VTQF+  WIE AGL+K D+LGL+T
Sbjct: 531  SNKIETEERRFADELDLDQPDNGKAKAGESNDEKQVVTQFDKNWIETAGLLKIDYLGLET 590

Query: 579  LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            L ++ ++L  + +R  + +DL  +P  D +T+ +       GIFQ ESSGM+  +  +QP
Sbjct: 591  LAVIDETLRMIKRRHGLDIDLEKVPMTDRKTFRIFQEGKMAGIFQFESSGMQSYMTRLQP 650

Query: 638  DCIEDIIALVSLYRPGPI--------DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
              I DIIA+ +LYRPG +        + + ++ +RK+G+E I  +HP+++ +LKET GVI
Sbjct: 651  TQIGDIIAMSALYRPGALNARVDEHRNAVDLFVDRKHGREAIDYMHPMLEGILKETYGVI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI+Q++ G+S+++AD LR+AMGKK  E M+K K  FI+G    G+  T+A  +
Sbjct: 711  VYQEQVMQISQVMGGFSMAKADNLRKAMGKKKPEIMEKFKADFIAGGVAQGVHDTLATRV 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            F+L+++FA YGFNKSH+AAY V++Y T ++K HY +EF+ A +  E+ + E++K    +A
Sbjct: 771  FDLMSEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFVTAVLNSEIGDTERMKHLTDEA 830

Query: 810  RQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIM--EASADKPF 862
            + F I  +PPS+N     F V     G + I   L+AIK VG   AR I+       + F
Sbjct: 831  KSFGIATLPPSINKSDALFSVENSSNGRSAIRVGLSAIKQVG-GAARAIVTSRMRRKRDF 889

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             ++ D  + VD + +NR+ LE L+ AGA D F   R +LL ++D   K+ Q   +  T  
Sbjct: 890  LNIFDLTASVDLRVMNRKALECLILAGACDDFDPHRARLLANIDKAIKFGQMQNRTVTMG 949

Query: 923  HENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                F++E+G   D     L+   +     +  +E++++GFY S HPL  Y+   +    
Sbjct: 950  QCGFFSNEEGQEGDIHYPELDNADMMPDGEKLLHEKKLVGFYLSRHPLSAYRRDWQAFAN 1009

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 +   ++    ++  +VVS +  + +KG ++ +    +   + +   F
Sbjct: 1010 LPLN-TKEIVKNKQYKVIGVVVSLKPYQDKKGKQMLFGAIEDFTGKADFTIF 1060


>gi|139438972|ref|ZP_01772432.1| Hypothetical protein COLAER_01438 [Collinsella aerofaciens ATCC
            25986]
 gi|133775683|gb|EBA39503.1| Hypothetical protein COLAER_01438 [Collinsella aerofaciens ATCC
            25986]
          Length = 1267

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/1137 (30%), Positives = 553/1137 (48%), Gaps = 120/1137 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  H+ +S+L+GA  + +++++      PA+AITD   ++   + +    A     
Sbjct: 2    AFVHLHNHTVFSMLDGATRIQDMVNRAVELSMPAVAITDHGYMYGVPDLALACDAVNHNT 61

Query: 70   IIGCQLDI-------DMQDNLKMTNQGKTPF----------------------------- 93
                           D +D L   +  ++P                              
Sbjct: 62   PEYKTWSHDKAFLEKDRRDELVEPDPEESPREHAQYVKDMAMWDEKGNIDELKPPLVIKP 121

Query: 94   -------------------PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
                               P +  ++LL    EGY  L++ VS   +        R+ L 
Sbjct: 122  IFGCEVYFTPDETLARDHKPELYHMILLAKDQEGYVNLMQTVSEAAVQG-FYYKPRVTLD 180

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRHRG-- 191
             L+    +G+I  +   +G I +       + A K   TF+  F     Y+ +Q H    
Sbjct: 181  NLRR-HAKGMICTSACIAGIIPKYIDRGDMEGAIKWAETFRDTFDPGDFYIEIQEHGITT 239

Query: 192  ----YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                 D   +  ++ +A    + ++ATN+  +L  ED    DV+M +  +  V   +R R
Sbjct: 240  DNGLTDEQMDRTLIDIAKQVGVKVIATNDFHYLRREDAPVQDVIMCIGMNAKVDDPNRMR 299

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +T  + Y+K   EM ++F   PEA +NT+EIA +C   L   + ILPRF      D  + 
Sbjct: 300  MTGSEFYMKTEEEMRAMFPYCPEACDNTLEIADKCYVELDWDSIILPRFP---LLDPGET 356

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E++ R +   GL          +     + ++R ++E  VI    F+ YFLIVA+++QW
Sbjct: 357  HESQFRRECEKGLRQHYGDDWATREIGGVNIKERFEYEYKVICDKGFAAYFLIVAEYVQW 416

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N I VGPGRGS AG++ AYA+ IT  DPL   L+FERFL+P R  MPD D+DF  +R
Sbjct: 417  AKDNGIGVGPGRGSAAGAIVAYAMNITAFDPLENGLMFERFLSPQRTEMPDIDMDFDDER 476

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EV+ +V+  YG E+V  +IT+ +++AK A+ D  R L  P     RL K++ +DP   
Sbjct: 477  RLEVVEHVRQLYGPEKVTHVITYSTIKAKQAINDAARVLDYPVYMGQRLSKMVSSDPK-- 534

Query: 487  VSLQAIAD---------DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            V L+ + D         +  F EA   D    R+++ +  +EGL R    HA  ++I   
Sbjct: 535  VKLKQVLDKQPGKEDLFNPDFAEAYKKDDDARRIIDTALSIEGLTRGEGVHACAVLICRD 594

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKV 596
            P+++ VP   D +  + +TQ+    +   GL+K DFLGL+TLT++ K+   + +   + +
Sbjct: 595  PVNEHVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKANIKKNFGIDI 654

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
                IPFDD E + L+ +  T G+FQ+ES+GM   ++ M+P   + ++AL++LYRPGP+ 
Sbjct: 655  KEEEIPFDDPEIFKLMGSGHTAGVFQVESAGMTATIKNMKPTEYKHVVALIALYRPGPLG 714

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD-VL 713
              +V  Y NR NGKE  VS    +D +L ET G ++YQEQVM I+  + G+S  E+D  +
Sbjct: 715  AGMVSSYINRMNGKEPAVSYDDRLDDILGETYGTMVYQEQVMLISVEMCGFSKGESDSRI 774

Query: 714  RRAMGKKIKEEM------------DKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            R+ + KK  + +            +   + +++GA KN  ++ +A  I++ + +FA Y F
Sbjct: 775  RKPVAKKKIKLLTSTVLHWEDGSDETTYDHWMNGAIKNNYTREVAQKIWDDVLEFASYAF 834

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NKSH+A YA++  QTAW+K HYP E++AA +T      +KI  +    R   I ++ P V
Sbjct: 835  NKSHSAGYAILVMQTAWLKAHYPHEYMAAVLTSYTGKTDKIVHYVSACRHDGIPVLSPDV 894

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRR 880
            N    +F      + + LA I+GVGT  A+ I+ E  A  PF +L DF  RVDS + NRR
Sbjct: 895  NESGTEFTATKEGVRFGLAGIRGVGTGVAQAIIAEREAGGPFKTLHDFVERVDSSQANRR 954

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLD-----NIQKYAQWVEKNRTNKH---ENIFAHEKG 932
            V+ESL+ AGA D  GY R Q++  +D     NI   A   +K+R +      ++F   +G
Sbjct: 955  VIESLIKAGAFDSTGYPRRQMMHFVDKNNPENIIDAAVKRQKDRASGQTSFFDMFGDVEG 1014

Query: 933  T-FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----- 986
            + F   +        +  ++   E+ VLG Y S HPL  ++  L K     + +      
Sbjct: 1015 SGFEVSVPDPDGQEWDRHLKLSQEKEVLGIYVSDHPLRPFEYALAKARDFSFSQIDTGYE 1074

Query: 987  ----------VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                           G  +  A MV S  ++ T+ G  +G V   +   E     FP
Sbjct: 1075 VQNPTGGTINQEIPEGKALWWAGMVSSVSKRVTKNGDPMGIVQLEDMEGEATVVVFP 1131


>gi|47094219|ref|ZP_00231932.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 4b
            H7858]
 gi|226224175|ref|YP_002758282.1| DNA polymerase III (alpha subunit) DnaE [Listeria monocytogenes
            Clip81459]
 gi|47017408|gb|EAL08228.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 4b
            H7858]
 gi|225876637|emb|CAS05346.1| Putative DNA polymerase III (alpha subunit) DnaE [Listeria
            monocytogenes serotype 4b str. CLIP 80459]
 gi|328465072|gb|EGF36346.1| DNA polymerase III, alpha subunit [Listeria monocytogenes 1816]
          Length = 1108

 Score =  928 bits (2398), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1030 (35%), Positives = 577/1030 (56%), Gaps = 43/1030 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+P
Sbjct: 2    GFVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG            +T QG         ++L+  +  GY  L+++ S +   ++G    
Sbjct: 62   IIGMT----------VTIQGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---P 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             +  SWL+   +  LI ++ G+ G I+R     + + A +      ++F  + +Y++ Q+
Sbjct: 109  ELPQSWLRAYSSN-LIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQK 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P  
Sbjct: 168  ---ENPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLA 224

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P+ Y  ++ +M   +       A   T E+A RC   + +   +LPRF   E     + 
Sbjct: 225  GPN-YFTSQEDMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNEG----QN 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I++
Sbjct: 280  ASDVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +R
Sbjct: 332  SREAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     
Sbjct: 392  RDEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 452  LQ-KALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LGS-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F+V +     YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYF 963
            +D + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y 
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYV 927

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ 
Sbjct: 928  SAHPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDD 984

Query: 1024 AKEYEANFFP 1033
            +KE  A  FP
Sbjct: 985  SKELSAVMFP 994


>gi|297583642|ref|YP_003699422.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10]
 gi|297142099|gb|ADH98856.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10]
          Length = 1126

 Score =  927 bits (2396), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1029 (35%), Positives = 579/1029 (56%), Gaps = 38/1029 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++ HL VH+ +SLL   + ++++ ++ ++    A+A+TD NN++ A+ F +   A GI+P
Sbjct: 2    AYAHLHVHTEFSLLSSLIRIDDLTEQASSQGFTALAMTDLNNIYGAVSFYRACRARGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +L ++            +      S++L   +  GYQ L+ LV+     +      
Sbjct: 62   ILGVELSMERLS-------LNSGRDVPTSLLLYAKSFRGYQSLVRLVTMACARE---AEP 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
             + +  L+  G E L++++  S G +         + A   L T + +FG+  +YV +Q 
Sbjct: 112  YVTMDELEAEGEE-LVVISPFSEGRMQLLAEEGRDEEASAFLKTIRNVFGEEDVYVEIQN 170

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++R R  ++ +      +P+VATN+   L  + + A   L A+     + + D   
Sbjct: 171  HWLRWERERMQRIRKWLTNERVPVVATNHVHALEPDQFGALQTLQAIKDGVRIEEIDESL 230

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              PD YLKN  EM   F+    AL+ T EI  +C   L +   ILP +   + +      
Sbjct: 231  RAPDMYLKNEEEMREQFAKWNTALDVTEEIVAKCEVELPLGGQILPSYPVSDGE----TA 286

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LRN    GL  R            + +R+RL+ EL VI  M +  YFLIVADF+ +A
Sbjct: 287  ASLLRNWCEKGLYERY-------HAPEEKHRERLEKELQVIHDMGYEDYFLIVADFMDYA 339

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +N I  GPGRGS AGS+ AY L ITD+DP+ + LLFERFLNP+R+SMPD DIDF    R
Sbjct: 340  HRNGILTGPGRGSAAGSLVAYLLRITDVDPILYDLLFERFLNPERVSMPDIDIDFSDLDR 399

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D+VI YV  +YG  +VAQI+TFG+L AKAALRD  R L +P + VDRL KLIP  P   +
Sbjct: 400  DQVIHYVHERYGASKVAQIVTFGTLAAKAALRDTARVLGIPTADVDRLSKLIPARPNMTI 459

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            +  A+ +   F +A    P  D LL+ +  +EG+ RH S HAAG+V+   PL+ +VP+  
Sbjct: 460  TA-ALEEAPAFNKAIREMPKGDLLLKTALDIEGIARHTSIHAAGVVMSKDPLTDIVPLQ- 517

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                 L +TQF M  +E  GL+K DFLGL+ L+ +++  + + ++    +DL+ +P +D 
Sbjct: 518  PSNDGLTITQFPMGDLEDLGLLKMDFLGLRNLSFMERIAETVKEKTGEALDLTRLPLEDE 577

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              + LL    T GIFQLES GMR+ L+ ++P+  EDI+A+ +LYRPGP++ I +Y  RKN
Sbjct: 578  RMFALLGKGETNGIFQLESQGMRRVLKQLKPERFEDIVAVNALYRPGPMEQIPLYIRRKN 637

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E +   H  +  +L  T GV+IYQEQ+MQIA  ++G+SL+EAD+LRRA+ KK KEE++
Sbjct: 638  GEEPVTYPHEDLREILAPTYGVMIYQEQIMQIASKMAGFSLAEADMLRRAVSKKKKEELE 697

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + +  F+ GA   G ++  A  ++EL+ +FA+YGFN+SHA AY++IS + AW+KT +P  
Sbjct: 698  RSRTLFVEGAVGRGYAEDEATRVYELIERFANYGFNRSHAVAYSMISCRLAWLKTVHPEA 757

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+AA M   +   +K+ ++  +A+Q  +++  PSV      F V +  I  +L  I+  G
Sbjct: 758  FMAALMEQSVHAPDKLVRYIAEAKQMGLRVSGPSVQRSSRRFTVNNGEIVMALQVIRHTG 817

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
               A  I+ A   + PF SL DFC RV  K ++R+ +ESL+ AGA+D FG  R  L  SL
Sbjct: 818  HHAAAEIIRAREEEGPFGSLFDFCKRVSLKIVSRKTVESLIMAGAMDDFGVDRTSLFASL 877

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            ++  ++      +   +  ++F  E+G    +    +        + + E+ V+GFY SG
Sbjct: 878  EDAFQFG-----DEDAEGFSLFEQEEG----EPDYRQGGRMTLMDKLDEEREVMGFYLSG 928

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            HP++    +L+    +   E++        +RLA M+   +  +T+KG ++ +V+ S+  
Sbjct: 929  HPVEDDLELLKTYKRQSILEAMGVASEKMTVRLAGMIEHIRLIRTKKGDQMAFVSMSDET 988

Query: 1025 KEYEANFFP 1033
               +   FP
Sbjct: 989  GAMDITVFP 997


>gi|315453387|ref|YP_004073657.1| DNA polymerase III, alpha chain [Helicobacter felis ATCC 49179]
 gi|315132439|emb|CBY83067.1| DNA polymerase III, alpha chain [Helicobacter felis ATCC 49179]
          Length = 1190

 Score =  927 bits (2396), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1056 (35%), Positives = 588/1056 (55%), Gaps = 46/1056 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL +H+ YSLL+GA  +  +  +I      +++++D  N+F A++F       GI+P
Sbjct: 3    NFTHLHLHTEYSLLDGANKIKILAQRIKELGMTSVSMSDHGNMFGAIDFYTCMKKEGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +   +NL+     +        + L     EGY  L+ L S+ +L        
Sbjct: 63   IIGIETYLHNAENLEDKQSRQR-----FHLCLYAKDQEGYANLMYLSSQAFLKG-FYYFP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTFKKLFG 179
            RI    L+E   +GLI  +    G I+     N+           + A++    ++ +FG
Sbjct: 117  RINKKLLKERA-KGLICSSACLQGEINWHLNLNNPKNKQYGAKGYEEAKRIACEYQDIFG 175

Query: 180  DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            D  Y+ + RH   D+ Y + Q+++L+    + L+ATN++ +  +ED  A +V M VA + 
Sbjct: 176  DDFYMEIMRHGITDQLYIDEQLIKLSLQTGIKLIATNDTHYTKQEDARAQEVAMCVAMNK 235

Query: 239  VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR--- 294
                KDR + +  + Y+K+ ++M  +F+D+PEALE+T EIAR+C   L +     P    
Sbjct: 236  TFGDKDRLKHSVHEFYIKSPAQMAELFADIPEALEHTQEIARKCQLELDLKDDSNPPTPP 295

Query: 295  -------FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                   +  KE  D +++      +KA  GL+ RL     ++      Y++RL++E+  
Sbjct: 296  RFKFTKEYATKEGLDFEEDAL-YFAHKAREGLKKRLEIIDPSQHAT---YQERLEYEIKT 351

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I  MKF+GY LIV DFI+ A+++ IPVGPGRGS AGS+ A+ L ITDIDPL++ LLFERF
Sbjct: 352  IVEMKFAGYMLIVWDFIRHARESGIPVGPGRGSAAGSLVAFCLQITDIDPLKYDLLFERF 411

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPD D DFCQ RR E++ Y+ +KYG   VAQ+ITF  + AK  +RDV R L M
Sbjct: 412  LNPERVSMPDIDTDFCQRRRGEMLDYMVSKYGKYNVAQVITFNKMLAKGVIRDVARVLDM 471

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
            PY + D + KLIPN     +  +A   + +       + +  ++ E +  LE L R A  
Sbjct: 472  PYKEADEMAKLIPNRLGITLK-EAFELEPKIAMLINTNKTAKQVWEFALNLENLNRSAGK 530

Query: 528  HAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            HAA +V+  +R L    P+Y   R+   VTQ++MK++E   LIKFDFLGLKTL+++  +L
Sbjct: 531  HAAALVVDSERELWHKTPLYTSERTGGIVTQYSMKYLEAVDLIKFDFLGLKTLSVIDDAL 590

Query: 587  DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
              + +    K+D   +  DD   Y  +    T+GIFQ+ES   +   + ++P C EDIIA
Sbjct: 591  KLIEKYAHQKIDFLSVDMDDPSVYQTIQEGNTIGIFQIESGMFQTLNKRLRPSCFEDIIA 650

Query: 646  LVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            +++L RPGP+++ +V  + NRK+G E I      ++P+L+ T G I+YQEQVMQI Q + 
Sbjct: 651  IIALGRPGPMESGMVDDFVNRKHGLEPITYAFDALEPILRPTYGTIVYQEQVMQIVQTIG 710

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G+SL EAD++RRAMGKK  + M   + +FI GA K G     A ++F+L+ KFA YGFNK
Sbjct: 711  GFSLGEADLIRRAMGKKDAQIMADNRAKFIEGARKRGYEADKAGDLFDLIVKFAGYGFNK 770

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA++++QTA++KTHY  EF+AA ++ E  ++E++  +  +A    I++  P VN 
Sbjct: 771  SHSAAYAMLTFQTAYLKTHYKHEFMAAMISSECRHIEEVAHYVDEASSMGIEVQRPHVNV 830

Query: 824  PCVDFKV----GDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLN 878
              V F+V    G   I + L AIKG G      ++E       F  L+DF S++D  K +
Sbjct: 831  SDVRFRVQEEGGKKHIVFGLEAIKGAGEGPLGTLVEIREKHGAFKDLQDFISKIDFSKFS 890

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            +R+LE L+ +G+LD  GY+R  +L++LD I +  +  +K        +FA  + T    +
Sbjct: 891  KRILEPLIKSGSLDNLGYNRRTMLENLDAICEEGRRKDKTNAQMRAGLFADAQ-TERAHL 949

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRL 997
             L  +   + +   + E   +G YFSGHPL+ +K  ++ +  I    +      G+N+ L
Sbjct: 950  ELTPYEEYDINTLLDFEYECMGIYFSGHPLNEFKDQIKPLKNILKSTDIKRVEIGSNVVL 1009

Query: 998  AAMVVSK-QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               ++   ++   +     G     + +  +E   F
Sbjct: 1010 VGKILELKRKLGKKSKKPYGEAVIVDLSGRFELMLF 1045


>gi|300871757|ref|YP_003786630.1| DNA polymerase III subunit alpha [Brachyspira pilosicoli 95/1000]
 gi|300689458|gb|ADK32129.1| DNA polymerase III, alpha subunit [Brachyspira pilosicoli 95/1000]
          Length = 1208

 Score =  927 bits (2396), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1030 (35%), Positives = 571/1030 (55%), Gaps = 36/1030 (3%)

Query: 17   HSSYSLLEGALSLNNI--------------LDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            H+ YS+L+GA  + ++              +D+      PAIA+TD  N+F A+EF  +A
Sbjct: 2    HTQYSILDGAARIKSLYSKVDKTKRLIPGLIDRAKELDMPAIAMTDHGNMFGAMEFFSEA 61

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               GI PIIGC++ +  +          +   +   +VLL    EGY  L +LV+  Y  
Sbjct: 62   KDKGIIPIIGCEVYVAPKTRFDK-KLDNSEEKSAMHLVLLAKDKEGYNNLCKLVTFGYTE 120

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                   R+    +++   +GLI L+    G I  A      + A K    +K +FG+  
Sbjct: 121  G-FYYRPRVDHELIEKY-NKGLICLSACMGGEIPIAIRKKDYKQASKLAEYYKSIFGEDF 178

Query: 183  YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ LQ H    D+   S + +LA  H + LV TN+  ++S+ED +AH++L+A+     + 
Sbjct: 179  YIELQDHGLAEDKTLNSALYKLANHHNIELVVTNDVHYVSKEDAKAHEILLAIQTKATLD 238

Query: 242  QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRC-SFILQVHAPILPRFIEKE 299
               R +  + + +LK   EM   F+ LP+A ENTV+IA +C    +      +P +    
Sbjct: 239  SPRRYKFPSNEFHLKTEEEMKKSFAKLPKAFENTVKIAEQCKDLNIMTKTYYMPNYELPN 298

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +     E   LR   + GL               ++  +RLD EL VIA+M F GYFL+
Sbjct: 299  GE----TETTALRKMCIEGLNKHYNNDI------PKEAMERLDMELGVIAKMGFEGYFLV 348

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI +A+ +++ VGPGRGS AGS+ A+A  IT ++PL ++LLFERFLNP+R SMPD D
Sbjct: 349  VQDFINYARNHDVAVGPGRGSAAGSIVAFASGITKVNPLDYNLLFERFLNPERKSMPDID 408

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  D+R+ VI YV NKYG + V+QI TFG+L  ++ +RDV R + +  +  DRL K I
Sbjct: 409  VDFQDDKREVVIDYVTNKYGKDNVSQIATFGALGGRSVIRDVCRVMGIDLATADRLAKSI 468

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P+D    V +    D + FR+       +  + EIS +L+GL R+   HAAG++I   P+
Sbjct: 469  PDDIKRVVDIYDHPDCAEFRKEIDNSRELKNMYEISMRLDGLVRNVGLHAAGVIISSHPI 528

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            + L P+Y+D ++     Q+ M ++E AGLIK DFLG+K L L++ ++  + +R   ++D+
Sbjct: 529  ADLAPVYQDSKTGTRACQYEMTYVESAGLIKMDFLGIKNLRLIKDAIKDIKERYGKEIDI 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD   Y +     T G+FQ ES GMRQ L  +QP   +D+++ V+L+RPGP+ + 
Sbjct: 589  DKIPLDDEAVYKIFRHADTGGVFQFESPGMRQMLLNIQPTAFDDLVSSVALFRPGPLKSG 648

Query: 659  V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +   Y +RKN +++IV  HP ++P+LKE+QGV+IYQEQ+M I++ + G++ +EAD LR+A
Sbjct: 649  MDKDYADRKNKRKEIVYKHPDLEPILKESQGVLIYQEQIMAISRAIGGFTAAEADDLRKA 708

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKKI E+M+  +E+FISG  + G  + +   +F+ +  FA+YGFNKSH+  YA+I+YQ 
Sbjct: 709  MGKKIVEKMNSMREKFISGGLERGYDEELLNYLFDTMKGFAEYGFNKSHSVCYALIAYQE 768

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K HYP+E+  A +   + + +KI  +  + +Q NI+++  SV      F   + +I 
Sbjct: 769  AYIKAHYPMEYYVALLNTVIADTDKIALYLNEIKQKNIEVVTASVFESDALFSQKNGKIV 828

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y+L A+KGVG   A  I E    +  F +LEDF  RVD   +NR+V E+L+  GA   FG
Sbjct: 829  YALHAVKGVGLQAALAIQEERENNGQFKNLEDFVKRVDVHLVNRKVYETLIKCGAFSDFG 888

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFE 953
            ++   L+ SLD I  +A   +K   +    +F    E  T S  + +EK     +++  E
Sbjct: 889  HTESALISSLDAILAHASNYQKETLSGQTMLFDSMSEDDTGSASLVIEKQVEYANNILME 948

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            NE+ VLGF    HP   Y   +         E           + A++++  +  T+K S
Sbjct: 949  NEKEVLGFSLRYHPFARYITKIDYKYFNNLLELEELEDKYEFSIPAILMNISEGTTKKNS 1008

Query: 1014 RIGWVTFSEP 1023
             +  +   + 
Sbjct: 1009 PMLILKVIDL 1018


>gi|300766000|ref|ZP_07075971.1| DNA polymerase III, alpha subunit [Listeria monocytogenes FSL N1-017]
 gi|300513318|gb|EFK40394.1| DNA polymerase III, alpha subunit [Listeria monocytogenes FSL N1-017]
          Length = 1108

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1030 (35%), Positives = 577/1030 (56%), Gaps = 43/1030 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+P
Sbjct: 2    GFVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG            +T QG         ++L+  +  GY  L+++ S +   ++G    
Sbjct: 62   IIGMT----------VTIQGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---P 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             +  SWL+   +  LI ++ G+ G I+R     + + A +      ++F  + +Y++ Q+
Sbjct: 109  ELPQSWLRAYSSN-LIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQK 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P  
Sbjct: 168  ---ENPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLA 224

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P+ Y  ++ +M   +       A   T E+A RC   + +   +LPRF   E     + 
Sbjct: 225  GPN-YFTSQEDMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNEG----QN 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I++
Sbjct: 280  ASDVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++  I  GPGRGS AGS+ +YAL+ITD+DP+R++LLFERFLNP+R++MPD D+DF  +R
Sbjct: 332  SREAGILTGPGRGSAAGSLVSYALSITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG   VAQI  FG+L AKAA+RD  R+  +    +    KLIP+     
Sbjct: 392  RDEVISYVVSKYGEAHVAQIGMFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 452  LQ-KALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LGS-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P 
Sbjct: 690  NEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F+V +     YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYF 963
            +D + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y 
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYV 927

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ 
Sbjct: 928  SAHPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDD 984

Query: 1024 AKEYEANFFP 1033
            +KE  A  FP
Sbjct: 985  SKELSAVMFP 994


>gi|311031337|ref|ZP_07709427.1| DNA polymerase III DnaE [Bacillus sp. m3-13]
          Length = 1108

 Score =  926 bits (2394), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1022 (36%), Positives = 600/1022 (58%), Gaps = 45/1022 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL + SSYSLL  ++  + ++++       ++A+TD + ++ A++F +   +A I+PII
Sbjct: 4    VHLYIKSSYSLLNSSVRFSKLVERANELGLNSLALTDEDVMYGAVDFYKACKSANIKPII 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  L                   +   ++LL    +G+  L++L S +    Q K    +
Sbjct: 64   GLTLS---------VLSDGEDGESTYPVILLAKNNQGFTNLMKLSSVV----QTKSPQGV 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               WL+   T+GLI +  GS   + +    N  Q AE  L  F++   D LY+ + R+  
Sbjct: 111  PKRWLKHY-TKGLIAILSGSESELAQ----NEEQTAEAYLEMFEQ---DCLYLGIDRNSA 162

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
              R +     +     ELP+VA +   +L +ED   ++ L ++   T +     P+  PD
Sbjct: 163  ESREQSETTRK--RHSELPIVAMSKVHYLHKEDVFVYECLRSIKQGTKLES--LPKEAPD 218

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             YL+  +EM  +F D+P+ALENT +I+ +C   L+     LP +   E    ++  +  L
Sbjct: 219  -YLRATNEMTQLFEDIPDALENTWKISNQCHVELEFGQAALPSYPVPE----EENADEYL 273

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                  GL  R+       G  AQ+Y++RL +EL VI  MKFS YFLIV DF+ +A+   
Sbjct: 274  EKICWEGLHKRV-------GEPAQEYKERLQYELQVIKGMKFSDYFLIVWDFMYYARNAG 326

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I  GPGRGS AGS+ AY+L ITD+DP+   LLFERFLNP+R++MPD DIDF  ++RDEVI
Sbjct: 327  ILTGPGRGSAAGSLVAYSLFITDVDPIEHDLLFERFLNPERITMPDIDIDFQDNKRDEVI 386

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV  KYG   VAQIITFG+L AKAA RDV +AL +   +++ + K+IP+ P   +   A
Sbjct: 387  RYVAEKYGQLHVAQIITFGTLAAKAAWRDVAKALNLSGKELEMISKMIPSRPGITLDA-A 445

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
              ++ + + A        R  + +QK+EGL RH+STHAAG+VI  +PL++L+P+    + 
Sbjct: 446  YQENEKLQSAINETKERKRAFQTAQKIEGLPRHSSTHAAGVVITHKPLTELIPIQ-AGQQ 504

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            D+ +TQ+ M+ +E+ GL+K DFLGL+ LT++Q     +  R  K  +  IP DD  T+ L
Sbjct: 505  DIYLTQYTMETLEELGLLKMDFLGLRNLTMIQSIRHQVK-RETKQHIEEIPLDDAATFRL 563

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            L+   T GIFQLES GM++ L  ++P  +EDI+A+ +LYRPGP++ I ++  RK+G +K+
Sbjct: 564  LSEGDTSGIFQLESPGMKKVLTKLKPSNLEDIVAVNALYRPGPMEQIPLFIERKHGLKKV 623

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
               HP + P+L++T GVI+YQEQ+MQIA +++G+SL EAD+LRRA+GKK K+ + K++E 
Sbjct: 624  EYPHPDLIPILEKTFGVIVYQEQIMQIAAVMAGFSLGEADLLRRAVGKKKKDVLAKEREH 683

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            F+ G  K G  + +A ++++L+ +FADYGFN+SHA AY++ISY+ A++K +YP  F+A  
Sbjct: 684  FVEGCLKKGYDEKVANSVYDLIVRFADYGFNRSHAVAYSMISYELAYLKANYPKIFMATL 743

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            ++  M + +K+ ++  + ++  IQ++PPS+N   + F+V +  I +SL  IKGVG    +
Sbjct: 744  LSSVMGSEQKLSQYITETKRKGIQVLPPSINKSGIAFQVEEAGIRFSLLTIKGVGVQAIK 803

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
             ++E    K F  L DFC+R  S K+NR+ +E L+F G++D F   R  LL +LD   ++
Sbjct: 804  ALIEERRKKEFSDLFDFCNRA-SSKVNRKTIEMLIFGGSMDEFEEDRATLLATLDVAMQH 862

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            A+ V  +  N   + F  E+  F+ K    K      + + + E+  LGFY S HP + +
Sbjct: 863  AELVMPSDDN-QIDFFMEEE--FNIKPKYVKVEPLQLTEQLQLEKEALGFYLSKHPTEPF 919

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                +  G     +  +T      R+ + + +++  +T+KG  + ++T S+ + + EA  
Sbjct: 920  AAYFQLGGGCLILDLPSTG-ARKARVGSFISNERVIRTKKGDLMAFLTLSDQSGDLEAVA 978

Query: 1032 FP 1033
            FP
Sbjct: 979  FP 980


>gi|300933332|ref|ZP_07148588.1| DNA polymerase III subunit alpha [Corynebacterium resistens DSM
            45100]
          Length = 1189

 Score =  926 bits (2393), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/1069 (29%), Positives = 526/1069 (49%), Gaps = 53/1069 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+G   ++ +  +      PA+ +TD  N+F A  F +   AA I+P
Sbjct: 5    SFVHLHNHTEYSMLDGMAKVDMLAAEAKRQGMPAVGMTDHGNMFGADAFYRAMTAADIKP 64

Query: 70   IIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  I  +             +  +   +         ++   A G + L  L S  
Sbjct: 65   IIGIEAYIAPESRFNQNRVRWGNPEQKSDDVSASGAYLHQTMIAENATGLRNLFYLSSLA 124

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF- 178
                Q  +  R+    + E   EG+I  TG  SG +           A +    ++ ++ 
Sbjct: 125  SYEGQLGKWPRMDAELIAE-HAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAKWQDIYG 183

Query: 179  GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +R     ++++    +LP + TN+  ++ E    AH+V++ V   
Sbjct: 184  KDNFFLELMDHGLEIERRVREDLLEIGRRLDLPPLVTNDCHYVLESQAAAHEVMLCVQTG 243

Query: 238  TVVSQK------DRPRVTP-DHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHA 289
            + + +        R   +   +YL+   ++ + +  ++P+  +NT+ +A R     +V  
Sbjct: 244  STLDEPTLDEGGKRFAFSGTGYYLRTAEDLRAQWDKEVPKGCDNTLWVAERVQDYSEVWE 303

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                  +        +     L ++ + GLE R     +       +Y  R  +E+ VI 
Sbjct: 304  EHPFDRMPIADVPEGETPTTWLTHEVMKGLEDRFPGKPV-----PTEYIDRAKYEIEVID 358

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               +  YFLIVA+ I++A+   I VGPGRGS AGS+ AYALTIT+IDP+   LLFERFLN
Sbjct: 359  MKGYPSYFLIVAELIKYARSVGIRVGPGRGSAAGSLVAYALTITNIDPMEHGLLFERFLN 418

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467
            P+R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K A++D  RA   Q 
Sbjct: 419  PERPSAPDIDIDFDDRRRGEMIRYASDRWGEDKIAQVITFGTVKTKQAIKDSARAHYGQA 478

Query: 468  PYSQVDRLCKLIPN-DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKL 518
             +   DR+ K +P    A  + L  I D            R     DP V+++ + ++ L
Sbjct: 479  GFQMADRITKALPPAIMAKDIPLSGIMDPEHERYNEAAEVRNLIETDPDVNKIYQDARGL 538

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EG+ R A  HA  +++   PL   +PM++  +    +T +     E  GL+K DFLGL+ 
Sbjct: 539  EGVVRQAGVHACAVIMSSVPLLDCIPMWKRKQDGALITGWPYPACEAIGLLKMDFLGLRN 598

Query: 579  LTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  +L+ +   R   +DL  +  +D  TY LL    TLG+FQL+S GM++ L+ M+P
Sbjct: 599  LTVIGDALENIKANRDFDLDLENLSTEDEPTYELLARGETLGVFQLDSGGMQELLKRMKP 658

Query: 638  DCIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIY 691
                DI+A ++LYRPGP+       Y +RKNG++ IV IHP ++     +L+ET G+I+Y
Sbjct: 659  TGFNDIVAALALYRPGPMGVGAHWEYADRKNGRKPIVPIHPELEEPLQEILEETYGLIVY 718

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQ+M+I+Q ++ Y+  +AD  R+AMGKK  E ++K+   F SG   NG S      +++
Sbjct: 719  QEQIMKISQKVANYTAGQADGFRKAMGKKKPEVLEKEFVNFESGMKDNGFSDAAIKTLWD 778

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K   +  D R 
Sbjct: 779  TILPFAGYAFNKSHAAGYGLVSFWTAYLKANYAPEYMAALLTSVADKKDKSAIYLADCRH 838

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
              I+++ P VN     F+     I + L A++ VG      I+ +  +   F    D+  
Sbjct: 839  LGIRVLSPDVNESAYTFQSVGEDIRFGLGAVRNVGEEVVESIIRSREEKGAFKDFSDYLD 898

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +++    ++RV ESL+ AGA D  G+ R  L+   ++        +K       ++FA  
Sbjct: 899  KIEIAAASKRVTESLIKAGAFDSLGHPRKGLVLVHEDAVDAVTSTKKAAAKGQFDLFAGF 958

Query: 931  KGTFSD----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
                +     ++ +   +  +       E+ +LG Y SGHPLD ++  L           
Sbjct: 959  GDDEAVGDVFRVDVPDQN-WDRKHELAMERDMLGLYVSGHPLDGFEDALDAQVDTPLTTV 1017

Query: 987  V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK-EYEANFF 1032
            +         +++  ++ S +++  R G+     T  +    + E   F
Sbjct: 1018 LSGELPNNREVKIGGIISSVERRVDRNGNPWVICTLEDQHGAQVELLVF 1066


>gi|315124217|ref|YP_004066221.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315017939|gb|ADT66032.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 961

 Score =  925 bits (2391), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/967 (38%), Positives = 561/967 (58%), Gaps = 46/967 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F  ++F Q   A G++PI
Sbjct: 4   FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGVIDFYQTMKAQGLKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64  IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRA----------FFFNSSQVAEKRLLTFKKLFGD 180
           I    L++  +EGLI  +    G ++            F     + A++  L +KK+F D
Sbjct: 118 INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
           ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +  P  P F   
Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLDLNLGNPTPPNFKFT 296

Query: 296 --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
               K+ + I  EE  E                GLE RL     +K    ++Y+QRL+ E
Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLKFIDESKH---EEYKQRLEVE 353

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
             M     D L KL+P +    +   A   + + +E     P    + E ++ LEGL R+
Sbjct: 474 CDMSIQDADELAKLVPEELKITLDA-AYEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532

Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
           A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533 AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583 QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
             ++  + +R    +    I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593 NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642 DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
           DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653 DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
           Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713 QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773 GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820 SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
           S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833 SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
           K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893 KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936 DKITLEK 942
            ++    
Sbjct: 953 VQVNFTP 959


>gi|16800677|ref|NP_470945.1| hypothetical protein lin1609 [Listeria innocua Clip11262]
 gi|16414096|emb|CAC96840.1| dnaE [Listeria innocua Clip11262]
          Length = 1108

 Score =  925 bits (2391), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1030 (35%), Positives = 581/1030 (56%), Gaps = 43/1030 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+P
Sbjct: 2    GFVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG            +T QG         ++L+  +  GY  L+++ S +   ++G    
Sbjct: 62   IIGMT----------VTIQGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---P 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             +  SWL+   +  LI ++ G+ G ++R     +   A +       +F  + +Y++ Q+
Sbjct: 109  ELPQSWLRAYSSN-LIAISPGAKGEVERLLMEENRDGALEVYENLVSIFGKESVYLSAQK 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +    +++   +   + P+VAT +  ++  +D +A +VL A+  +  V     P  
Sbjct: 168  ---ENPRLFAKIEAFSAEEKAPVVATKDVQYMEPKDAQAKEVLTAIRDNRTVDWATLPLA 224

Query: 249  TPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P+ Y  +++EM   +      +A   T ++A RC   + +   +LPRF   E    ++ 
Sbjct: 225  GPN-YFTSQAEMERDWQTGFEKQACLETEKLAERCHVEIALDQHLLPRFPLNE----EQN 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR  A AGL+ R           A++Y++RLD+EL VI  M F+ YFLIV D I++
Sbjct: 280  APDVLRETAYAGLKER--------NLLAKEYQERLDYELKVITEMGFADYFLIVWDVIRY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +R
Sbjct: 332  SREAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     
Sbjct: 392  RDEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 452  LQ-KALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LGS-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNRETPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S++ A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K HYP 
Sbjct: 690  NEERIHFVEGARSKGYSESSANQVYDMIIQFANYGFNRSHAAAYSKIAFQLAYLKAHYPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F++ +   I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGINMLAPSINHSNYYFQMENETSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFKDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYF 963
            +D + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y 
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYV 927

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S HP+  Y+  L+ + I       +   G   ++AA V   +  +T+KG  + ++T S+ 
Sbjct: 928  SAHPVSYYQNKLQNLAITRLA---SVSSGKIYQVAAYVHEVKSIRTKKGETMCFLTISDE 984

Query: 1024 AKEYEANFFP 1033
            +KE  A  FP
Sbjct: 985  SKELSAVMFP 994


>gi|91204889|ref|YP_537244.1| DNA polymerase III subunit alpha [Rickettsia bellii RML369-C]
 gi|122426107|sp|Q1RKF9|DPO3A_RICBR RecName: Full=DNA polymerase III subunit alpha
 gi|91068433|gb|ABE04155.1| DNA polymerase III alpha chain [Rickettsia bellii RML369-C]
          Length = 1172

 Score =  924 bits (2388), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1069 (39%), Positives = 621/1069 (58%), Gaps = 69/1069 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+  SSYS L  AL+   I++  ++ +  AI +TD  NLF +LEF+  A   G+QPI
Sbjct: 5    FIHLRTQSSYSFLASALTTEKIVELASSYKMAAICLTDKENLFGSLEFALYAIKKGLQPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L+I  +  +               I+L+     GY+ L++L S  +  +  K    
Sbjct: 65   HGVILNIQYETGV------------FAEILLIAKDETGYKNLLKLSSITFTTNDRKICNH 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L+E   EGLI L   + G I +    N  + AE      +++FGDR Y  + RH 
Sbjct: 113  ITFEDLKE-HQEGLITLCCYTEGVIGKCLLANKEEQAEMFARNLQEIFGDRFYFEIMRHD 171

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               ++  E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  V+
Sbjct: 172  LPEEQLIEDNYIKIASKLNIPLVATNKVLFSKKSMHDAHDVLLCISAGVTKEYPDRKTVS 231

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + Y K+  EM+ +F+DLP A+ENTV + +RC F    + P+LP F  K+       E +
Sbjct: 232  ENCYFKSAKEMIELFADLPSAIENTVNLTQRCYFAAHTNPPMLPNFATKDI-----SETD 286

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIVAD 362
             +R +A  GL  RL     ++    +       +Y  RLD+ELN+I  M F+GYFLIV+D
Sbjct: 287  LIRKEAKDGLLARLDTKFKSEHISIEHQESIKTEYFARLDYELNIICSMNFAGYFLIVSD 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNPDR+SMPDFDIDF
Sbjct: 347  FIKWSKKQGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPDRISMPDFDIDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P  
Sbjct: 407  CQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVPFS 466

Query: 483  PAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAAGI 532
              +PV+L QAI +      A   +           +  +L+ S  LEGL+RH+STHAAGI
Sbjct: 467  AINPVTLEQAIREVPELANAAKGNGLYNLEGELELIKLVLDTSLILEGLHRHSSTHAAGI 526

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L ++
Sbjct: 527  VIAGTDLVDIVPVYKDANSDMLVVGYSMKYCELAGLIKFDFLGLQTLTVITDCKKLLKEQ 586

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +++D + + FDD +TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LYRP
Sbjct: 587  NIEIDFNDMTFDDEKTYQMLCKGKGVGVFQFESVGMKDALRRLKPDSIHDLIALGALYRP 646

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  AD+
Sbjct: 647  GPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADL 706

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKKIK EM++Q+E F+ GA  N IS+  A +IF  +AKFA YGFNK+HAAAY VI
Sbjct: 707  LRRAMGKKIKAEMEQQEEIFVKGAIANNISEAQAKSIFATVAKFAGYGFNKAHAAAYGVI 766

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQTA++K +YP EF+ A + LE++N +KI  F Q+A+  NI+I+ P++N     F V  
Sbjct: 767  SYQTAYLKANYPAEFVVACLNLELNNHDKINLFLQEAKDNNIKIIAPNINISGGYFSVKS 826

Query: 833  NRIY--------------------------YSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865
                                          ++L AIKGV     + + +   A   F S+
Sbjct: 827  VIPRLDCGIHGDQLKDTAVKPQYDIDSSIIFALGAIKGVTPNFGKLVTDERNARGAFKSI 886

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DF  R+  K +N ++LE+L+ AG  D    +R+QL  S+  +  Y+    + + +   +
Sbjct: 887  VDFIERLPPKAINSKLLENLIKAGCFDELHDNRLQLFLSISKLLAYSVSYHEEQASNQFS 946

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            +   +  + S +I +     + +++ F  E   +G + S HPL  YK I  ++ I    +
Sbjct: 947  L--IKVSSLSKEILVSSDYADKNTLAF-YEFEAMGLFISNHPLTEYKEIFNRLNILSSAD 1003

Query: 986  SV-ATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   G N + +A ++  K  + + +G R   +  S+P   +E + F
Sbjct: 1004 LHNNLPDGTNRVMIAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSIF 1051


>gi|172040866|ref|YP_001800580.1| DNA polymerase III subunit alpha [Corynebacterium urealyticum DSM
            7109]
 gi|171852170|emb|CAQ05146.1| DNA polymerase III, alpha subunit [Corynebacterium urealyticum DSM
            7109]
          Length = 1188

 Score =  923 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/1072 (29%), Positives = 536/1072 (50%), Gaps = 51/1072 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S SFVHL  H+ YS+L+G   ++ + ++++    PA+ +TD  N+F A  F +   A
Sbjct: 1    MSRS-SFVHLHNHTEYSMLDGMAKVDMLAEEVSRQGMPAVGMTDHGNMFGADAFYRTMTA 59

Query: 65   AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AGI+PIIG +  +                +      +         +L   A G + L  
Sbjct: 60   AGIKPIIGIEAYMAPDSRFNMNRVRWGNPEQKKDDVSASGAYLHQTMLAENATGLRNLFY 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +           A +    +
Sbjct: 120  LSSMASYEGQLGKWPRMDAELIAE-HAEGVIATTGCPSGDVQTRLRLGQFNEALEAAAMW 178

Query: 175  KKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++  D  ++ L  H    ++    +++++    +LP + TN+  ++ E    AH+V++
Sbjct: 179  QDIYGKDNFFLELMDHGLEIEKRVRDELMEIGRKLDLPPLVTNDCHYVLENQAAAHEVML 238

Query: 233  AVAHSTVVSQK------DRPRVTPD-HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFI 284
             V   + + +        R   +   +Y++   ++ + +  + P+  +NT+ IA R    
Sbjct: 239  CVQTGSTMDEPTIDEGGKRFAFSGSSYYIRTAEDIRNQWDHVVPDGCDNTLWIAERVQDY 298

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             ++        +            + L ++   GLE R   G +      Q+Y  R ++E
Sbjct: 299  GEIWEEHPYDRMPVAEVPEGHTPTSWLTHEVNRGLEERFNGGPV-----PQEYLDRAEYE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            ++VI    +  YFLIVA+ I++A+   I VGPGRGS AG++ AYALTIT+IDP+   LLF
Sbjct: 354  ISVIDMKGYPSYFLIVAELIKYARSVGIRVGPGRGSAAGALVAYALTITNIDPIEHGLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K A++D  RA
Sbjct: 414  ERFLNPERPSAPDIDIDFDDRRRGEMIRYASDRWGEDKIAQVITFGTVKTKQAIKDSARA 473

Query: 465  L--QMPYSQVDRLCKLIPN-DPAHPVSLQAIADDS--------RFREARLADPSVDRLLE 513
               Q  +   DR+ K +P    A  + L+ I D            R+    DP V+++ E
Sbjct: 474  WYGQAGFQMADRITKALPPAIMAKDIELKGIKDPEHPRYAEAAEVRQLIDTDPQVNKIYE 533

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             +  LEG+ R A  HA  +++   PL   +PM++  +    +T +     E  GL+K DF
Sbjct: 534  DALGLEGVVRQAGVHACAVIMSSVPLLDCIPMWKRKQDGALITGWPYPACEAIGLLKMDF 593

Query: 574  LGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL+ LT++  ++D + + RG   DL  +  +D  TY LL    TLG+FQL+S GM++ L
Sbjct: 594  LGLRNLTVIGDAIDNIKKNRGEDFDLEGLATEDAATYELLARGDTLGVFQLDSGGMQELL 653

Query: 633  EGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDP----MLKETQ 686
            + MQP    DI+A ++LYRPGP+       Y +RKNG++ I  IHP ++     +L+ET 
Sbjct: 654  KRMQPTGFNDIVAALALYRPGPMGVKAHWEYADRKNGRKPITPIHPELEEPLKEILEETY 713

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+I+YQEQ+M+I+Q ++ Y+  +AD  R+AMGKK +E +D++ E F  G   NG SK   
Sbjct: 714  GLIVYQEQIMRISQKVANYTAGQADGFRKAMGKKKREVLDQEYETFSGGMIDNGYSKDAI 773

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              ++  +  FADY FNKSHAA Y ++S+ TA++K +Y  E++AA +T   +  +K   + 
Sbjct: 774  DTLWNTILPFADYAFNKSHAAGYGLVSFWTAYLKANYTAEYMAALLTSVSNQKDKSAIYL 833

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSL 865
             D R   I+++ P VN     F+     I + L A++ VG      I+ +  +   F   
Sbjct: 834  SDCRHLGIKVLSPDVNESAFTFQSVGEDIRFGLGAVRNVGEDVVESIIASREEKGDFKDF 893

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             D+  ++D+   ++RV ESL+ AGA D  G+ R  L+   ++        +K       +
Sbjct: 894  SDYLDKIDAVAASKRVTESLIKAGAFDSLGHPRKGLVLVHEDAVDAVVATKKAAAKGQFD 953

Query: 926  IFAHEKGTFSDKITLEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +FA      +  +   +              E+ +LG Y SGHPLD ++  L        
Sbjct: 954  LFAGLGAEEAGDVFKVEVPDQEWERKHELALERDMLGLYVSGHPLDGFEDALDAQIDTPL 1013

Query: 984  EESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK-EYEANFF 1032
               +        ++++  ++ S +++  R G+     T  +    + E   F
Sbjct: 1014 PTVLSGELPNNKDVKIGGIISSVERRVDRNGAPWVIATLEDQHGAQVELLVF 1065


>gi|116873003|ref|YP_849784.1| DNA polymerase III, alpha subunit [Listeria welshimeri serovar 6b
            str. SLCC5334]
 gi|116741881|emb|CAK21005.1| DNA polymerase III, alpha subunit [Listeria welshimeri serovar 6b
            str. SLCC5334]
          Length = 1108

 Score =  923 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1030 (35%), Positives = 579/1030 (56%), Gaps = 43/1030 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+P
Sbjct: 2    GFVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG            +T QG         ++L+  +  GY +L+++ S +   ++G    
Sbjct: 62   IIGMT----------VTIQGYFNPINSYELILIAESTAGYHQLLKIASAIQTREEG---P 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
             +  SWL+   +  LI ++ G+ G I+R     +   A +       +FG+  +Y++ Q+
Sbjct: 109  ELPQSWLRAYSS-DLIAISPGAKGEIERLLMEENRDGALEAYENLVAIFGNSSVYLSAQK 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +    +++   +   E+P+VAT +  +L  +D +A +VL A+  +  V     P  
Sbjct: 168  ---ENPRLFAKIEVFSAEEEVPVVATKDVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLA 224

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P+ Y  ++ EM   +      +A   T ++A RC   + +   +LPRF   E    ++ 
Sbjct: 225  GPN-YFSSQDEMERDWQTDFEKQACLETGKLAERCHVEIALDQHLLPRFPLDE----KQN 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR  A AGL+ R            ++Y+ RLD+EL VI  M F+ YFLIV D I++
Sbjct: 280  ASDVLRQTAYAGLKER--------DLLTREYQNRLDYELKVITEMGFADYFLIVWDVIRY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +R
Sbjct: 332  SREAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     
Sbjct: 392  RDEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGMT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 452  LP-KALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +       + L+ I  +D
Sbjct: 511  LGS-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYASEKPLTLADISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570  KKTLTLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S+  A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K HYP 
Sbjct: 690  NEERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHYPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I ++ PS+N     F++ +   I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGINMLAPSINHSNYYFQMENETSIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V       I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L +
Sbjct: 810  VPAKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYF 963
            +D + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y 
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYV 927

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ 
Sbjct: 928  SAHPVSYYQNKLQNLSITKLANITS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDD 984

Query: 1024 AKEYEANFFP 1033
            +KE  A  FP
Sbjct: 985  SKELSAVMFP 994


>gi|157964927|ref|YP_001499751.1| DNA polymerase III subunit alpha [Rickettsia massiliae MTU5]
 gi|157844703|gb|ABV85204.1| DNA polymerase III alpha chain [Rickettsia massiliae MTU5]
          Length = 1181

 Score =  923 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1081 (38%), Positives = 624/1081 (57%), Gaps = 79/1081 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++  +A++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELASANKMPAICLADKGNLFGSLEFALYAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I            K        I+L+     GY+ L++L S  +  D  K  
Sbjct: 63   PIHGVILNI------------KYDIDIFAQILLIAKDETGYKNLLKLSSLTFTKDDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L E   EGLI L   + G + +     + + A       +++ GDR Y  + R
Sbjct: 111  DHIDFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +++ E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYPDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y ++  EM+ +FSDLP A++NTV +  RC F    + P+LP F  K+       E
Sbjct: 230  VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATKDI-----SE 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
             + +R  A  GL  RLA    ++    +       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIRKDAKEGLLARLATKFKSENISLENQEELKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PVSL QA+ +      A   +           +  +L+ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVLDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYAEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAA+Y 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            V+SYQTA++K +YP EFL A + LE++N +KI  F Q+A+   I+I  P++N     F V
Sbjct: 765  VLSYQTAYLKANYPAEFLVACLNLELNNHDKINFFLQEAKDNGIKITAPNINISEGYFSV 824

Query: 831  G------------------------------------DNRIYYSLAAIKGVGTTTARHIM 854
                                                    I ++L AIKGV     + + 
Sbjct: 825  KFSDTVIPHSVRPVIPRLDRGIQEISKDTVVKPRYDIAGAIIFALGAIKGVTPNFGKLVT 884

Query: 855  -EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
             E  A   F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QLL S+  +  YA 
Sbjct: 885  DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYAT 944

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
               + + +   ++   +  + S  I +     + +++ F  E   +G + S HPL  Y+ 
Sbjct: 945  SYHEEQESNQFSL--IKVSSLSPTILVSSDYADKNTLAF-YEFEAMGLFISNHPLTEYQE 1001

Query: 974  ILRKMGIKGYEESV-ATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            I  ++ I    +       G N + LA ++  K  + + +G R   +  S+P   +E + 
Sbjct: 1002 IFSRLNILNTADLHNNLPDGTNRVSLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSI 1060

Query: 1032 F 1032
            F
Sbjct: 1061 F 1061


>gi|157827786|ref|YP_001496850.1| DNA polymerase III subunit alpha [Rickettsia bellii OSU 85-389]
 gi|157803090|gb|ABV79813.1| DNA polymerase III subunit alpha [Rickettsia bellii OSU 85-389]
          Length = 1172

 Score =  923 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1069 (39%), Positives = 624/1069 (58%), Gaps = 69/1069 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+  SSYS L  AL+   I++  ++ +  AI +TD  NLF +LEF+  A   G+QPI
Sbjct: 5    FIHLRTQSSYSFLASALTTEKIVELASSYKMAAICLTDKENLFGSLEFALYAIKKGLQPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L+I  +  +               I+L+     GY+ L++L S  +  +  K    
Sbjct: 65   HGVILNIQYETGV------------FAEILLIAKDETGYKNLLKLSSITFTTNDRKICNH 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L+E   EGLI L   + G I +    N  + AE      +++FGDR Y  + RH 
Sbjct: 113  ITFEDLKE-HQEGLITLCCYTEGVIGKCLLANKEEQAEMFARNLQEIFGDRFYFEIMRHD 171

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               ++  E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  V+
Sbjct: 172  LPEEQLIEDNYIKIASKLNIPLVATNKVLFSKKSMHDAHDVLLCISAGVTKEYPDRKTVS 231

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + Y K+  EM+ +F+DLP A+ENTV + +RC F    + P+LP F  K+       E +
Sbjct: 232  ENCYFKSAKEMIELFADLPSAIENTVNLTQRCYFAAHTNPPMLPNFATKDI-----SETD 286

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIVAD 362
             +R +A  GL  RL     ++    +       +Y  RLD+ELN+I  M F+GYFLIV+D
Sbjct: 287  LIRKEAKDGLLARLDTKFKSEHISIEHQESIKTEYFARLDYELNIICSMNFAGYFLIVSD 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNPDR+SMPDFDIDF
Sbjct: 347  FIKWSKKQGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPDRISMPDFDIDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P  
Sbjct: 407  CQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVPFS 466

Query: 483  PAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAAGI 532
              +PV+L QAI +      A   +           +  +L+ S  LEGL+RH+STHAAGI
Sbjct: 467  AINPVTLEQAIREVPELANAAKGNGLYNLEGELELIKLVLDTSLILEGLHRHSSTHAAGI 526

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L ++
Sbjct: 527  VIAGTDLVDIVPVYKDANSDMLVVGYSMKYCELAGLIKFDFLGLQTLTVITDCKKLLKEQ 586

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +++D + + FDD +TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LYRP
Sbjct: 587  NIEIDFNDMTFDDEKTYQMLCKGKGVGVFQFESVGMKDALRRLKPDSIHDLIALGALYRP 646

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  AD+
Sbjct: 647  GPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADL 706

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKKIK EM++Q+E F+ GA  N IS+  A +IF  +AKFA YGFNK+HAAAY VI
Sbjct: 707  LRRAMGKKIKAEMEQQEEIFVKGAIANNISEAQAKSIFVTVAKFAGYGFNKAHAAAYGVI 766

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG- 831
            SYQTA++K +YP EF+ A + LE++N +KI  F Q+A+  NI+I+ P++N     F V  
Sbjct: 767  SYQTAYLKANYPAEFVVACLNLELNNHDKINLFLQEAKDNNIKIIAPNINISGGYFSVKS 826

Query: 832  -------------------------DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865
                                     D+ I ++L AIKGV     + + +   A   F S+
Sbjct: 827  VIPQLDRSIHGDQLKDTAVKPQYDIDSSIIFALGAIKGVTPNFGKLVTDERNARGAFKSI 886

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DF  R+  K +N ++LE+L+ AG  D    +R+QL  S+  +  Y+    + + +   +
Sbjct: 887  VDFIERLPPKAINSKLLENLIKAGCFDELHDNRLQLFLSISKLLAYSVSYHEEQASNQFS 946

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            +   +  + S +I +     + +++ F  E   +G + S HPL  YK I  ++ I    +
Sbjct: 947  L--IKVSSLSKEILVSSDYADKNTLAF-YEFEAMGLFISNHPLTEYKEIFNRLNILSSAD 1003

Query: 986  SV-ATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   G N + +A ++  K  + + +G R   +  S+P   +E + F
Sbjct: 1004 LHNNLPDGTNRVMIAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSIF 1051


>gi|189346342|ref|YP_001942871.1| DNA polymerase III, alpha subunit [Chlorobium limicola DSM 245]
 gi|189340489|gb|ACD89892.1| DNA polymerase III, alpha subunit [Chlorobium limicola DSM 245]
          Length = 1189

 Score =  923 bits (2386), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1071 (34%), Positives = 572/1071 (53%), Gaps = 62/1071 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YS+    +    +          ++A+TD  ++F+  E    A  A ++ I
Sbjct: 3    FVHLHVHTHYSMQSSPVFPGELFSACRQLGMKSVAVTDYCSIFNMPELFSDAKKADVKLI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +L +     L+     +      PSI+LLV +  GY+ L  L+SR         +  
Sbjct: 63   IGTELFL-----LESATHSQAKNTFSPSIILLVQSEAGYRNLCVLLSRASREGFINGTPH 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +  S L E   +GLI L+  SSG I RA    S   AE     +K +FGD  Y+ LQRH 
Sbjct: 118  L-ESRLLEDHHDGLICLSAYSSGRIGRALLAGSLHEAETVTGYYKDIFGDNFYLELQRHA 176

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              +D    +  + LA    + LVATNN  +L  +D   +  ++A      +S ++   + 
Sbjct: 177  TSFDDKLNAATIALAEKFSVELVATNNVHYLDRKDSGCYRAMIANRTKEKLSSQNLQALP 236

Query: 250  P-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +HYLK   EM  IF D   AL N+  IA +C+++ +   PILP +   +  D   +E 
Sbjct: 237  GSEHYLKTAEEMARIFPDNGSALANSARIAEKCTYVFKKKEPILPHYRLPDGFD---DEA 293

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR+    G   + A G+ A G   +D R R++ EL VI +M FS YFLIV+D I  ++
Sbjct: 294  KYLRHLTWEGAAEKYA-GSEADGITEEDVRARIELELGVIEKMGFSSYFLIVSDLISASR 352

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +    VGPGRGS AGS+ AY   IT IDPL++ LLFERFLNP+R+SMPD DIDF    + 
Sbjct: 353  RMGYSVGPGRGSAAGSIVAYLTGITRIDPLKYKLLFERFLNPERLSMPDIDIDFTPVGKQ 412

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +V+ Y   KYG + VA+++  G+L AKAA+RD GR L++P   VDRL KL+P  P   + 
Sbjct: 413  KVLEYTVEKYGDQSVAKVVAIGTLGAKAAIRDAGRVLEVPLPIVDRLAKLVPTKPGITLE 472

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY-- 546
             +AI++    ++   + P   +LLE ++ LEG  R+ S HA  +VI D PL + VP+Y  
Sbjct: 473  -KAISEVRDLKQFVESSPENLKLLEYARALEGRARNVSMHAGAVVITDGPLEEQVPLYVS 531

Query: 547  ---------------------------RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
                                         V     VTQF+  WIE AGL+K D+LGL+TL
Sbjct: 532  NKIETEVRKYADEIDLDETVQIGVKGADGVDEKQIVTQFDKNWIETAGLLKIDYLGLETL 591

Query: 580  TLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
             ++ ++L  + +R  + +DL  +P +D +T+ +       GIFQ ESSGM+  +  +QP 
Sbjct: 592  AVIDETLHLIRRRHNIDIDLEKVPMNDRKTFRIFQEGKMAGIFQFESSGMQNYMTRLQPT 651

Query: 639  CIEDIIALVSLYRPGPIDN--------IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
             I DIIA+ +LYRPG ++         + ++ +RK+G+E I  +HP+++ +LKET GVI+
Sbjct: 652  QIGDIIAMSALYRPGALNARIDENRNAVDLFVDRKHGRESIDYMHPMLEEILKETYGVIV 711

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVMQI+Q++ G+S+++AD LR+AMGKK+ E M++ K  F+SG    G+  T+A  +F
Sbjct: 712  YQEQVMQISQVMGGFSMAKADNLRKAMGKKMPEIMEQFKADFVSGGVAQGVHDTLATRVF 771

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            EL+A+FA YGFNKSH+AAY V++Y T ++K HY  EF+ A +  E+ + +++K    +A+
Sbjct: 772  ELMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTAEFMTAILNSEIGDTDRMKHLTDEAK 831

Query: 811  QFNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIM--EASADKPFDS 864
             F I  +PPS+N     F +    G   I   L+AIK VG   AR ++       + F +
Sbjct: 832  SFGIMTLPPSINKSDTLFAIEDDKGKPCIRVGLSAIKQVG-GAARAVVTSRLRKKRDFLN 890

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            L D  + VD + +NR+ LE L+ AG+ D    +R +LL ++D   K+ Q   ++ T    
Sbjct: 891  LFDLTASVDLRVMNRKALECLILAGSFDELDSNRAKLLANVDKAIKFGQMQNRSVTLGQC 950

Query: 925  NIFAHEKGTFSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
              F  E G   +      L+       S +   E++++GFY S HPL  Y          
Sbjct: 951  GFFTSEAGGTGEDVHYPDLDPADPMPESEKLLQEKKLVGFYLSRHPLSPYHRDWEAFATL 1010

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +         ++  ++VS +  + RKG  + +    +   + +   F
Sbjct: 1011 QLN-AKEVTPARQYKVIGLIVSIKPHQDRKGKAMLFGALEDFTGKADFTVF 1060


>gi|78187124|ref|YP_375167.1| DNA polymerase III, alpha subunit [Chlorobium luteolum DSM 273]
 gi|78167026|gb|ABB24124.1| DNA polymerase III, alpha subunit [Chlorobium luteolum DSM 273]
          Length = 1188

 Score =  922 bits (2384), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1072 (34%), Positives = 568/1072 (52%), Gaps = 63/1072 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YS+    +    +  K A+    ++A+TD   +F+  E    A  AG++ 
Sbjct: 2    DFVHLHAHTHYSMQSSPIFPGELFTKAASLGMKSVAVTDYCAIFNMPELFSDAAGAGVRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L       L    + +      PS+VLLV    GY+ L  L+SR           
Sbjct: 62   IIGSELL------LLEGEEHQQKQAQAPSLVLLVQNETGYRNLCVLLSRASKDGFHNGMP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L+     GL  L+  SSG I RA    ++  AE +   ++++FG+R ++ LQRH
Sbjct: 116  HVDPKLLETYHD-GLFCLSAYSSGRIGRALLSGAAGEAESQAAYYREVFGNRFHLELQRH 174

Query: 190  RG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               YD    +  V L     +PLVATNN  +L   D   +  ++A      +S ++   +
Sbjct: 175  STHYDDELNAATVALGEKLSIPLVATNNVHYLERRDAGCYRAMVANRTKEKLSSQNLLAL 234

Query: 249  TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               ++YLK+  EM  +F D    L  T+ IA  C++      PILP F   E      +E
Sbjct: 235  PGKEYYLKSPEEMGLLFDDRYGELSATLRIAEACTYAFSEKDPILPHFPVPEAFP---DE 291

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR+    G   +        G   +D ++R++ EL VI +M FS YFLIV+D IQ +
Sbjct: 292  AAYLRHLTWEGAREKYGDNP-EDGITPEDVKERIELELGVIEKMGFSSYFLIVSDLIQAS 350

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +K    VGPGRGS AGS+ AY   IT IDPL++ LLFERFLNP+R+SMPD DIDF    +
Sbjct: 351  RKMGYSVGPGRGSAAGSIVAYLTGITRIDPLKYKLLFERFLNPERLSMPDIDIDFTPVGK 410

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +V+ Y   KYG E VA+++  G+L AKAA+RD  R L++P S  DRL KL+P+ P   +
Sbjct: 411  QKVLEYTVEKYGPESVAKVVAVGTLGAKAAIRDAARVLEVPLSVADRLAKLVPSRPGTTL 470

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY- 546
              +A+ +    RE   + P +  L++ ++ LEG  R+ S HA  +VI + PL + VP+Y 
Sbjct: 471  E-KALLEVKELREYADSTPEIRELMDYARALEGRARNVSMHAGAVVITEGPLEEQVPLYV 529

Query: 547  ----------------------------RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                                                VTQF+  WIE AGL+K D+LGL T
Sbjct: 530  SNKIETEERQYADEIDLDEPAAGKPKSADGAGEKQVVTQFDKNWIETAGLLKIDYLGLVT 589

Query: 579  LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            L ++ ++L  + +R  V ++L  +P +D +T+ +       GIFQ ESSGM+  +  +QP
Sbjct: 590  LAVIDETLRLIKKRHGVDIELEEVPMNDRKTFKIFQEGKMAGIFQFESSGMQSYMTRLQP 649

Query: 638  DCIEDIIALVSLYRPGPI--------DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
              I DIIA+ +LYRPG +        + + ++ +RK+G+E I  +HP+++ +LKET GVI
Sbjct: 650  TQIGDIIAMSALYRPGALNARIDEKRNAVDLFVDRKHGRETIDYMHPMLETILKETYGVI 709

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI+Q++ G+S+++AD LR+AMGKK  E M+K K  F+ G  + G+  ++A  +
Sbjct: 710  VYQEQVMQISQVMGGFSMAKADNLRKAMGKKKPEIMEKFKADFVKGGVEQGVHDSLATRV 769

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            FEL+A+FA YGFNKSH+AAY V++Y T W+K HY +EF+ A +  E+ + E++K    +A
Sbjct: 770  FELMAEFAGYGFNKSHSAAYGVLAYWTGWLKAHYTIEFMTAILNSEIGDTERMKHLTDEA 829

Query: 810  RQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEA--SADKPFD 863
            + F I I+PPS+N     F V    G   I   L+AIK VG   AR I+ A     + + 
Sbjct: 830  KSFGISILPPSINKSDALFSVDDSTGPPAIRVGLSAIKQVG-GAARAIITARLRRKRDYL 888

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            +L D  + VD + +NR+ LE L+  GA D     R +LL ++D   K+ Q   +  T   
Sbjct: 889  NLFDLTASVDQRVMNRKALECLILCGAFDEIDPHRARLLANIDKAIKFGQIENRAVTLGQ 948

Query: 924  ENIFAHEKGTFSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
               F+ E+GT  +      +E  +      +  +E++++GFY S HPL  ++        
Sbjct: 949  CGFFSVEEGTVEEDAHYPDMEPAAEMPEPEKLMHEKKLVGFYLSRHPLSPWRRDWAAFSS 1008

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                    T+     R+  +VVS +    RKG ++ + +  +   + +   F
Sbjct: 1009 LQLHMREITLS-RQYRVIGLVVSTKPYCDRKGKQMLFGSIEDFTGKADFTVF 1059


>gi|313633079|gb|EFR99983.1| DNA polymerase III subunit alpha [Listeria seeligeri FSL N1-067]
          Length = 1108

 Score =  922 bits (2383), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1030 (35%), Positives = 583/1030 (56%), Gaps = 43/1030 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQV S+Y LL    S+++++ K      PA+AITD N L+ A+EF QK  AA I+P
Sbjct: 2    GFVHLQVASAYDLLSSTASVDSLVAKAKEYHYPALAITDKNVLYGAVEFYQKCLAADIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG            +T QG         ++L+  T  GY  L+++ S +   ++G++  
Sbjct: 62   IIGMT----------VTIQGYLNPINSYELILIAETTAGYHELLKIASAIQTREEGQELP 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            +   SWL+   ++ LI ++ G+ G ++R     +   A +       +FG D +Y++LQ+
Sbjct: 112  Q---SWLRAY-SKDLIAISPGAKGEVERLLMEENRDGALEAYQNLVAIFGGDSVYLSLQK 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +     ++       ++  VAT N  ++  +D +A +VL A+  +  V  +  P  
Sbjct: 168  ---ENPRLFGKIETFCTEEKVRAVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWETLPLA 224

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P+ Y  ++ E+   +      +  E T E+A RC   + +   +LPRF      +  + 
Sbjct: 225  GPN-YFTSQEEIEREWQTDFEKQVCEETGELAARCKVEIALDQHLLPRFPL----NADQS 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR  A AGLE R        G  A DY++RLD+EL VI  M F+ YFLIV D I++
Sbjct: 280  ASEVLRQTAYAGLEER--------GLMAPDYQERLDYELKVITEMGFADYFLIVWDVIRY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +R
Sbjct: 332  SREAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     
Sbjct: 392  RDEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +AI +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 452  LQ-KAIQESPRLENHIKSSKINEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LGS-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNREKPLTLAAISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   EDI+A+ +LYRPGP++ I  +  RK
Sbjct: 570  EKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDIVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKE I   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEAIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S++ A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K +YP 
Sbjct: 690  NEERIHFVEGARSKGYSESSANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKANYPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I+++ PS+N     F++ G+N I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGIRMLAPSINHSNYYFQIEGENAIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L   +LE+LV +G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFQDFFDFCERMPHKMLTETILEALVLSGCFDEFGEDRATVLAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYF 963
            +D + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y 
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKAAPISIDEKLEKEKLYTGQYV 927

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S HP+  Y+  L+ + I    +  +   G N R+A  V   +  +T+KG  + ++T S+ 
Sbjct: 928  SAHPVSYYQTKLQNLAITRLADIHS---GKNYRVAVYVHEVKSIRTKKGETMCFLTISDD 984

Query: 1024 AKEYEANFFP 1033
             KE  A  FP
Sbjct: 985  TKELSAVMFP 994


>gi|294786036|ref|ZP_06751323.1| DNA polymerase III, alpha subunit [Fusobacterium sp. 3_1_27]
 gi|294486373|gb|EFG33736.1| DNA polymerase III, alpha subunit [Fusobacterium sp. 3_1_27]
          Length = 1133

 Score =  922 bits (2383), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1035 (37%), Positives = 596/1035 (57%), Gaps = 40/1035 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSL EG  S++N L K       ++A+TD  N+F A+EF QKA   GI+P
Sbjct: 4    NFVHLNLHTEYSLSEGVNSIDNFLIKAKELGMTSLAVTDYANMFCAVEFYQKAKKMGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L I  +D              + S+ LL     GY+ L++L S +Y  ++ ++  
Sbjct: 64   IIGLELPISNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRELK 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE-KRLLTFKKLF-GDRLYVNLQ 187
             +    L+E  ++ LI L+   +G I +A   NSS     K +  + ++F  +  Y+ +Q
Sbjct: 113  -LNKEILKE-HSQDLIALSSSMNGEIGKAILTNSSDEKISKIIDEYIEIFSKENFYLEIQ 170

Query: 188  RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   + +    +   LA  H L LVATNN  ++  + YE  D+++ +     V +K+R 
Sbjct: 171  ANELPETKIINDRFYDLAKLHNLELVATNNVYYVDRDGYELQDIIICIQSGLKVKEKNRK 230

Query: 247  RV-TPDHYLKNRSEMVS-IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R  + + YLK++ EM   +     +A+ENT  IA  C+  +       P +   E     
Sbjct: 231  RAISKELYLKSKDEMKRFLGEKFEKAIENTNHIADLCNVEISFGNLQFPYY---EVPSEY 287

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L+      ++    +         +D   RL++EL+VI +M +SGYF++V DFI
Sbjct: 288  SGMDEYLKTICHTNIKKLYKEDL------TKDILDRLEYELSVIIKMGYSGYFIVVWDFI 341

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD DID C+
Sbjct: 342  SYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICR 401

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+L KLI     
Sbjct: 402  ERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLISPFQT 461

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               +L+   ++    +    D  + ++++++ ++E   RH STHAAGI+I    L + VP
Sbjct: 462  LEKTLK---ENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGILITKEDLDRTVP 518

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL  IP 
Sbjct: 519  IYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDLYKIPL 578

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPGP+ + +V  +
Sbjct: 579  DDKKVFQMLSLGDSTGVFQLESTGIRKIMKRLKPDKFEDIVALLALYRPGPLQSGMVDDF 638

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRAMGKK 
Sbjct: 639  INRKNGKEKIEYPHKDLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRAMGKKN 698

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               M + +E+FI  A KNG +   +  IFEL+ KFA YGFNKSH+ AYA+ISY TA+ K 
Sbjct: 699  FAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWTAYFKV 758

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP  + AA MT E+     I  +  DA++  I++  P++N+P   F+V +  I YSLAA
Sbjct: 759  HYPAFYYAAVMTSEISETGDIAYYFNDAKEHGIRVYSPNINSPSAYFEVKNEGITYSLAA 818

Query: 842  IKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GALD    +R +
Sbjct: 819  IKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIKGNRKE 878

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
               S+D +  Y+    K    +  N+F     T  D+  L          +   E+  LG
Sbjct: 879  KFLSIDKVLDYSSKSSKTDEIQQMNLFGEAAKTI-DRFNLAISEDFTLDEKLNKEKEFLG 937

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S HPLD YK IL    IK   E +       ++    + + ++  T+K  ++     
Sbjct: 938  FYLSSHPLDRYKDILITFSIKKLSE-IDLEEKQVVKTFGTITNLKKIITKKEEQMAMFNL 996

Query: 1021 S--EPAKEYEANFFP 1033
               +         FP
Sbjct: 997  ICYDRT--ISCIAFP 1009


>gi|289548089|ref|YP_003473077.1| DNA polymerase III subunit alpha [Thermocrinis albus DSM 14484]
 gi|289181706|gb|ADC88950.1| DNA polymerase III, alpha subunit [Thermocrinis albus DSM 14484]
          Length = 1150

 Score =  920 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1061 (35%), Positives = 553/1061 (52%), Gaps = 73/1061 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL+GA+ + ++ ++  A    A+AITD  NLF  LEF +     GI+P
Sbjct: 3    DFVHLHLHTQYSLLDGAIKIKDLAERAQAYGYRAVAITDHGNLFGLLEFYKTLKEKGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++G +             +G            I+L+    EG + L  L S  Y  +   
Sbjct: 63   LLGMEAYFTTGSRFDRKGKGSDDNLTDRINHHIILIAKDQEGLKNLFRLSSLSY-REGFY 121

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               RI    LQ+    GLI +T    G           + AE+ +   K LFGD LY+ L
Sbjct: 122  YKPRIDYELLQKYHR-GLIAVTACLKGVPTYYASMGEERKAEEWVKKLKDLFGDDLYLEL 180

Query: 187  QRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ--- 242
            Q +   ++   ++ ++ +A    + LVAT ++ +L  ED  AH VLMA+     +     
Sbjct: 181  QANGLPEQETANRVLINIAKRFGVKLVATADAHYLDPEDKTAHSVLMALQMKKTLQDIQK 240

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSD----LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +       D +     EM   F        +AL+NT+E+A +C+              + 
Sbjct: 241  EGLKYSVCDLHFAPPQEMWERFRGKFDGWEDALKNTLEVAEKCADSFPQLENKDYLLPKA 300

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                   EE   L + A  GL  R A G       +++Y  RL++E+  + RM F+GYFL
Sbjct: 301  YE---GVEEGQLLEDLAREGLRRRQALGHCP---DSKEYWDRLEYEIEQVRRMGFAGYFL 354

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK   +PVGPGRGS AGS+ AYAL ITD+DP++  LLFERFLNP+R+SMPD 
Sbjct: 355  IVQDFINWAKNQGVPVGPGRGSAAGSLLAYALGITDVDPVKHGLLFERFLNPERISMPDV 414

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC + R++VI+YV+ KYG ++VAQIIT+  ++AK ALRD  RAL +PYS  DRL KL
Sbjct: 415  DVDFCMEGREKVIQYVREKYGEDKVAQIITYNVMKAKQALRDAARALGLPYSVGDRLAKL 474

Query: 479  IPNDP--AHPVSLQAI--------------------ADDSRFREARLADPSVDRLLEISQ 516
            +P        +SL+ +                     +   FR+    D  + R++EI+ 
Sbjct: 475  VPPGDVQGSWLSLEEMVHTPLEELLEKYGHHRTDIEENVKTFRQLMETDAEIRRVVEIAL 534

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            KLEGL RH S HAAGIVI   PL ++VP Y D       TQ +M  +EK GL+K DFLGL
Sbjct: 535  KLEGLVRHTSLHAAGIVISPLPLEEVVPTYYD--DGQVATQLDMGQLEKLGLVKMDFLGL 592

Query: 577  KTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            KTLT L    + + +R    VD   IP DD  T+ LL    T G+FQLES GM++ L  +
Sbjct: 593  KTLTELNAMRNLIRERHKADVDFLKIPLDDERTFELLRKGNTSGVFQLESKGMQRLLSKL 652

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
             PD  ED++A ++LYRPGP+ + +V  Y  RK+GKE++    P ++P+LKET GV +YQE
Sbjct: 653  SPDRFEDLVAAIALYRPGPLKSGLVDSYVKRKHGKEEVEYPFPELEPVLKETYGVWVYQE 712

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            Q+M+ +Q+L+G++  EAD LR+A+GKK KE M   +E+FI GA + G  +     ++E  
Sbjct: 713  QIMKASQILAGFTPGEADTLRKAIGKKDKELMASLREKFIRGAVERGYKEEKITKLWEDF 772

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA Y FNKSH+ AY  +SY TA++K HY  EF A  ++ E ++  K      DA++  
Sbjct: 773  EKFASYSFNKSHSVAYGYLSYWTAYLKAHYTEEFFAVKLSYEKNDA-KFLALVNDAKKHR 831

Query: 814  IQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            I I+PP +N   V F +  +R   + LA IKG+G  TA  I++A       +        
Sbjct: 832  ITILPPDINKSHVHFVIEGDRTLRFGLARIKGIGEDTAYQIVKARK----TTWTQPSQVA 887

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
             +  LN++ LE+L+ AGA D  G SR  LL++L++         KN      ++F     
Sbjct: 888  RAAGLNKKALEALIKAGAFDFTGKSRTALLKALES---------KNALLGGVSLFEKNSQ 938

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
            +  D+              F  E+ VLGFY + HP+DV++  L     K  E        
Sbjct: 939  STEDR----------QEDIFHYEKEVLGFYLTRHPIDVWEGFLEDTCKKLEEVEELEGG- 987

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 A  +   + KKT K + +     ++          P
Sbjct: 988  -PYLFAGSLTDIKVKKTTKNTLMATAHLTDRTGMVPLIIPP 1027


>gi|295697007|ref|YP_003590245.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
 gi|295412609|gb|ADG07101.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
          Length = 991

 Score =  920 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/958 (38%), Positives = 562/958 (58%), Gaps = 46/958 (4%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           HL VHS+YSLL G      ++ +  AD  P +AITD  NL++A+ F + A  AGI+PI+G
Sbjct: 2   HLHVHSAYSLLRGVCRPEALIQRAVADGMPGVAITDWANLYAAIRFVRLAKEAGIRPILG 61

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            Q+ +  +   + +          P++VLL  + +G++ LI LVS  +          + 
Sbjct: 62  AQIPLVEESVQRPSR------GDPPAVVLLAESEKGFRGLIRLVSLAH------DGPELG 109

Query: 133 LSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRHR 190
           +SW        GL +L+GG+ GP+D A     ++ A   L  F ++F  +R ++ +Q   
Sbjct: 110 VSWEAVTAHAPGLFLLSGGAEGPVDAALARGDTERARDWLRRFVEVFGPNRAWLEVQD-D 168

Query: 191 GYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
           G +R R S  ++V L   + L  VAT +  ++  ED     V+ A+           P  
Sbjct: 169 GSERGRLSHYRLVSLGEEYGLLPVATADVHYIDPEDAPLARVVQALRQG---DDGAPPPS 225

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
               +  + +EM + F+ LP+A+   +EIA RC   L +   +LP F   E +      +
Sbjct: 226 PSPRWFASSAEMRARFAHLPQAVNAALEIAERCRVELPLGRVLLPSFDVPEGE----SPD 281

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             LR     GL  R+             Y+ RL+ EL+VIARM F+ YFLIV DFI++++
Sbjct: 282 GYLRRLCQEGLRQRVGDPV------PPSYKDRLEHELSVIARMGFASYFLIVWDFIRYSR 335

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
           +N I  GPGRGS AGS+ AYAL IT +DP+R  LLFERFLNP+R+SMPD DIDF  +RR 
Sbjct: 336 ENGIATGPGRGSAAGSLVAYALGITGVDPVRHHLLFERFLNPERVSMPDIDIDFEDERRF 395

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
           EVI YV  KYGH+RVAQIITFG++ A+AA+RD GR   +P + VDR+ KL+P      + 
Sbjct: 396 EVIEYVAQKYGHDRVAQIITFGTMAARAAIRDAGRVTGLPPALVDRVAKLVPASLGITLD 455

Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            QA+ ++ R R     +  V  LL +++ LEGL RH STHAAG+VI    L+ +VP+ R 
Sbjct: 456 -QALVEEPRLRALMDENEQVRTLLTVAKGLEGLPRHTSTHAAGVVIAPSALTDVVPVQRT 514

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
               L +TQ++M  +E  GL+K DFLGL+TL++++ +     +R          + D +T
Sbjct: 515 PEGGL-ITQYDMASLEAVGLLKMDFLGLRTLSIIEHTRQLAGERLGHAVEIDEEYTDPKT 573

Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
           Y LL    T G FQLESSG++  L  +QP+C EDI+A++SLYRPGP++NI  Y + K+G+
Sbjct: 574 YELLGRGDTDGCFQLESSGVKHVLRDLQPNCFEDIVAVISLYRPGPMENISRYIDAKHGR 633

Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             +   HP ++P+L++T G+++YQEQ+MQIA  ++G++L +ADVLRRA+GKK +E +++Q
Sbjct: 634 VPVHYPHPDLEPILRDTYGIVVYQEQIMQIASRMAGFTLGQADVLRRAVGKKKREVLEQQ 693

Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
           +  F++G  + G  + +A  +++L+ +FADYGFN+SHA AYAV+S++TA++K HYP EF 
Sbjct: 694 RAAFVAGCLRQGHPRDLAEELYDLIVRFADYGFNRSHAVAYAVLSWRTAYLKAHYPAEFF 753

Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGT 847
           A+ ++  M + +K+ ++ ++A Q  I+++PPSV T    F V  D +I ++L AIK VG 
Sbjct: 754 ASLLSAAMASADKVAQYVEEAFQRGIEVLPPSVQTSGAGFTVSEDGKIRFALGAIKHVGQ 813

Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              + ++ A     F SL DF SRVD +  +RR +E+L+ AGA D  G +R +LL  L+ 
Sbjct: 814 AAVQAVLGARRAGTFRSLGDFLSRVDHRACHRRTVEALIRAGAFDELGENRDELLGRLE- 872

Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             + + W            F  E           + S EN   +  +E+ ++G  F+G
Sbjct: 873 --RESHW---GGGGAQLTFFGEESPG-------RRASSENEQEKIRHEKELMGLTFTG 918


>gi|237740911|ref|ZP_04571392.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
 gi|229431208|gb|EEO41420.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
          Length = 1132

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1035 (37%), Positives = 597/1035 (57%), Gaps = 40/1035 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSL EG  S++N L K       ++A+TD  N+F A+EF QKA   GI+P
Sbjct: 3    NFVHLNLHTEYSLSEGVNSIDNFLIKAKELGMTSLAVTDYANMFCAVEFYQKAKKMGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L I  +D              + S+ LL     GY+ L++L S +Y  ++ ++  
Sbjct: 63   IIGLELPISNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRELK 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE-KRLLTFKKLF-GDRLYVNLQ 187
             I    L++  ++ LI+L+   +G I +A   NSS     K +  + ++F  +  Y+ +Q
Sbjct: 112  -INKEVLKKY-SQDLIVLSSSINGEIGKAILTNSSDEKISKIIDEYIEIFSKENFYLEIQ 169

Query: 188  RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   + +    +   LA  H L LVATNN  ++  + YE  D+++ +     V +K+R 
Sbjct: 170  ANELPETKIINDRFYDLAKLHNLELVATNNVYYVDRDGYELQDIIICIQSGLKVKEKNRK 229

Query: 247  RV-TPDHYLKNRSEMVS-IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R  + + YLK++ EM   +     +A+ENT  IA  C+  +       P +   E     
Sbjct: 230  RAISKELYLKSKDEMKRFLGEKFEKAIENTNHIADLCNIEISFGNLQFPYY---EVPSEY 286

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L+      ++    +         +D  +RL++EL+VI +M +SGYF++V DFI
Sbjct: 287  SGMDEYLKTICHTNIKKLYKEDL------TKDILERLEYELSVIIKMGYSGYFIVVWDFI 340

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD DID C+
Sbjct: 341  SYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICR 400

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+L KLI     
Sbjct: 401  ERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLISPFQT 460

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               +L+   ++    +    D  + ++++++ ++E   RH STHAAGI+I    L + VP
Sbjct: 461  LEKTLK---ENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGILITKEDLDRTVP 517

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL  IP 
Sbjct: 518  IYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDLYKIPL 577

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPGP+ + +V  +
Sbjct: 578  DDKKVFQMLSLGDSTGVFQLESTGIRKIMKRLKPDKFEDIVALLALYRPGPLQSGMVDDF 637

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRAMGKK 
Sbjct: 638  INRKNGKEKIEYPHKDLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRAMGKKN 697

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               M + +E+FI  A KNG +   +  IFEL+ KFA YGFNKSH+ AYA+ISY TA+ K 
Sbjct: 698  FAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWTAYFKV 757

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP  + AA MT E+     I  +  DA++  I++  P++N+P   F+V +  I YSLAA
Sbjct: 758  HYPAFYYAAVMTSEISETGDIAYYFNDAKEHGIRVYSPNINSPSSYFEVKNEGITYSLAA 817

Query: 842  IKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GALD    +R +
Sbjct: 818  IKNFGLTMAKKIIEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIKGNRKE 877

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
               S+D +  Y+    K    +  N+F     T  DK  L          +   E+  LG
Sbjct: 878  KFLSIDKVLDYSSKASKTDEIQQMNLFGEAAKTI-DKFNLAISEDFTLDEKLNKEKEFLG 936

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S HPLD YK I+    I    E +       ++    + + ++  T+K  ++     
Sbjct: 937  FYLSSHPLDRYKDIILAFRINKLSE-IDLEGSQIVKTFGTITNLKKIITKKEEQMAMFNL 995

Query: 1021 S--EPAKEYEANFFP 1033
               +         FP
Sbjct: 996  ICYDRT--ISCIAFP 1008


>gi|237745381|ref|ZP_04575862.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
 gi|229432610|gb|EEO42822.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
          Length = 1133

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1035 (37%), Positives = 597/1035 (57%), Gaps = 40/1035 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSL EG  S++N L +       ++A+TD  N+F A+EF QKA   GI+P
Sbjct: 4    NFVHLNLHTEYSLSEGVNSIDNFLVRAKELGMNSLAVTDYANMFCAVEFYQKAKKMGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L I  +D              + S+ LL     GY+ L++L S +Y  ++ ++  
Sbjct: 64   IIGLELPIFNKDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRELK 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLF-GDRLYVNLQ 187
             +    L+E  ++ LI L+   +G I +A   NSS      ++  + ++F  +  Y+ +Q
Sbjct: 113  -LNKEILKEY-SQDLIALSSSINGEIGKAILTNSSDEKINSIINEYIEIFSKENFYLEIQ 170

Query: 188  RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   + +    +   LA  + L LVATNN  ++  + YE  DV++ +     V +K+R 
Sbjct: 171  ANELSETKIINDKFYDLAKLNGLELVATNNVYYVDRDGYELQDVIICIQSGLKVKEKNRK 230

Query: 247  RV-TPDHYLKNRSEMVS-IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R  + + YLK++ EM   +     +A+EN   IA  C+  +       P +   E     
Sbjct: 231  RAISKELYLKSKDEMKRFLGEKFEKAIENANHIADLCNIEITFGNLQFPYY---EVPSEY 287

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L+      ++         K    +D   RL++EL+VI +M +SGYF++V DFI
Sbjct: 288  SGMDEYLKTICHTNIKKLY------KENLTKDILDRLEYELSVIIKMGYSGYFIVVWDFI 341

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD DID C+
Sbjct: 342  SYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICR 401

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+L KLI     
Sbjct: 402  ERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLISPFQT 461

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               +L+   ++    +    D  + ++++++ ++E   RH STHAAGI+I    L + VP
Sbjct: 462  LEKTLK---ENVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILITKEDLDRTVP 518

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL  IP 
Sbjct: 519  IYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDLYKIPL 578

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPGP+ + +V  +
Sbjct: 579  DDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQSGMVDDF 638

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRAMGKK 
Sbjct: 639  INRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRAMGKKN 698

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               M + +E+FI  A KNG +   +  IFEL+ KFA YGFNKSH+ AYA+ISY TA+ K 
Sbjct: 699  FAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWTAYFKV 758

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP  + AA MT E+     I  +  DA++  I++  P++N+P   F+V ++ I YSLAA
Sbjct: 759  HYPAFYYAAVMTSEISETGDIAYYFNDAKEHGIRVYSPNINSPSAYFEVKNDGITYSLAA 818

Query: 842  IKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GALD    +R +
Sbjct: 819  IKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIKGNRKE 878

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
               S+D +  Y+    K    +  N+F     T  DK  L          +   E+  LG
Sbjct: 879  KFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKTI-DKFNLAISEDFTLDEKLNKEKEFLG 937

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S HPLD YK I+    I    E +      +++    + + ++  T+K  ++     
Sbjct: 938  FYLSSHPLDRYKDIILAFRINKLSE-IDLEGNQSVKTFGTITNLKKIITKKEEQMAMFNL 996

Query: 1021 S--EPAKEYEANFFP 1033
            S  +         FP
Sbjct: 997  SCYDRT--ISCIAFP 1009


>gi|289434854|ref|YP_003464726.1| DNA polymerase III, alpha subunit [Listeria seeligeri serovar 1/2b
            str. SLCC3954]
 gi|289171098|emb|CBH27640.1| DNA polymerase III, alpha subunit [Listeria seeligeri serovar 1/2b
            str. SLCC3954]
          Length = 1108

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1030 (35%), Positives = 583/1030 (56%), Gaps = 43/1030 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQV S+Y LL    S+++++ K      PA+AITD N L+ A+EF QK  AA I+P
Sbjct: 2    GFVHLQVASAYDLLSSTASVDSLVAKAKEYHYPALAITDKNVLYGAVEFYQKCLAADIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG            +T QG         ++L+  T  GY  L+++ S +   ++G++  
Sbjct: 62   IIGMT----------VTIQGYLNPINSYELILIAETTAGYHELLKIASAIQTREEGQELP 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            +   SWL+   ++ LI ++ G+ G ++R     +   A +       +FG D +Y++LQ+
Sbjct: 112  Q---SWLRAY-SKDLIAISPGAKGEVERLLMEENRDGALEAYQNLVAIFGGDSVYLSLQK 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +     ++       ++  VAT N  ++  +D +A +VL A+  +  V  +  P  
Sbjct: 168  ---ENPRLFGKIETFCMEEKVRAVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWETLPLA 224

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P+ Y  ++ E+   +      +  E T E+A RC   + +   +LPRF      +  + 
Sbjct: 225  GPN-YFTSQKEIEREWQTDFEKQVCEETGELAARCKVEIALDQHLLPRFPL----NADQS 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR  A AGLE R        G  A DY++RLD+EL VI  M F+ YFLIV D I++
Sbjct: 280  ASEVLRQTAYAGLEER--------GLMAPDYQERLDYELKVITEMGFADYFLIVWDVIRY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +R
Sbjct: 332  SREAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     
Sbjct: 392  RDEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +AI +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 452  LQ-KAIQESPRLENHIKSSKINEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LGS-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNREKPLTLAAISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   EDI+A+ +LYRPGP++ I  +  RK
Sbjct: 570  EKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDIVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKE I   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEAIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S++ A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K +YP 
Sbjct: 690  NEERIHFVEGARSKGYSESSANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKANYPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I+++ PS+N     F++ G+N I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGIRMLAPSINHSNYYFQMEGENAIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L   +LE+LV +G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFQDFFDFCERMPHKMLTETILEALVLSGCFDEFGEDRATVLAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYF 963
            +D + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y 
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKAAPISIDEKLEKEKLYTGQYV 927

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S HP+  Y+  L+ + I    +  +   G N R+A  V   +  +T+KG  + ++T S+ 
Sbjct: 928  SAHPVSYYQTKLQNLAITRLADIHS---GKNYRVAVYVHEIKSIRTKKGETMCFLTISDD 984

Query: 1024 AKEYEANFFP 1033
             KE  A  FP
Sbjct: 985  TKELSAVMFP 994


>gi|256028238|ref|ZP_05442072.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289766170|ref|ZP_06525548.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289717725|gb|EFD81737.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
          Length = 1133

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1035 (36%), Positives = 595/1035 (57%), Gaps = 40/1035 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSL EG  S++N L K       ++A+TD  N+F A+EF QKA   GI+P
Sbjct: 4    NFVHLNLHTEYSLSEGVNSIDNFLIKAKELGMTSLAVTDYANMFCAVEFYQKAKKMGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +  +D              + S+ LL     GY+ L++L S +Y  ++ ++  
Sbjct: 64   IIGLELPVFNKDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRELK 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRLYVNLQ 187
             +    L+E  ++ LI  +   +G I +A   NSS    +  +  + ++F  +  Y+ +Q
Sbjct: 113  -LNKEILKEY-SQDLIAFSSSMNGEIGKAILTNSSDEKIDSIINEYIEIFSKENFYLEIQ 170

Query: 188  RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
             +   + +    +   LA  + L LVATNN  ++  + YE  D+++ +     V +K+R 
Sbjct: 171  ANELLETKIINDKFYDLAKFYNLELVATNNVYYVDRDGYELQDIIICIQSGLKVKEKNRK 230

Query: 246  PRVTPDHYLKNRSEMVS-IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              ++ + YLK++ EM   +     +A+EN   IA  C+  +       P +   E     
Sbjct: 231  RTISKELYLKSKDEMKRFLGEKFEKAIENANYIADLCNIEITFGNLQFPYY---EVPSEY 287

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L+      ++    +         +D   RL++EL+VI +M +SGYF++V DFI
Sbjct: 288  SGMDEYLKTICHTNIKKLYKEDL------TKDILDRLEYELSVIIKMGYSGYFIVVWDFI 341

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD DID C+
Sbjct: 342  SYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICR 401

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+L KLI     
Sbjct: 402  ERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLISPFQT 461

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               +L+   ++    +    D  + ++++++ ++E   RH STHAAGI+I    L + VP
Sbjct: 462  LEKTLK---ENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGILITKEDLDRTVP 518

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL  IP 
Sbjct: 519  IYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDLYKIPL 578

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPGP+ + +V  +
Sbjct: 579  DDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQSGMVDDF 638

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRAMGKK 
Sbjct: 639  INRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRAMGKKN 698

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               M + +E+FI  A KNG +   +  IFEL+ KFA YGFNKSH+ AYA+ISY TA+ K 
Sbjct: 699  FAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWTAYFKV 758

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP  + AA MT E+     I  +  DA++  +++  P++N+P   F+V +  I YSLAA
Sbjct: 759  HYPAYYYAAVMTSEISETGDIAYYFNDAKEHGVRVYSPNINSPSAYFEVKNEGITYSLAA 818

Query: 842  IKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GALD    +R +
Sbjct: 819  IKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIKGNRKE 878

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
               S+D +  Y+    K    +  N+F     T  DK  L          +   E+  LG
Sbjct: 879  KFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKTI-DKFNLAISEDFTLDEKLNKEKEFLG 937

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S HPLD YK +L    IK   E        +++    + + ++  T+K  ++     
Sbjct: 938  FYLSSHPLDRYKDVLTTFSIKKLSEF-DLEGNQSVKTFGTITNLKKIITKKEEQMAMFNL 996

Query: 1021 S--EPAKEYEANFFP 1033
            S  +         FP
Sbjct: 997  SCYDRT--ISCIAFP 1009


>gi|296327603|ref|ZP_06870148.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
            nucleatum subsp. nucleatum ATCC 23726]
 gi|296155277|gb|EFG96049.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
            nucleatum subsp. nucleatum ATCC 23726]
          Length = 1133

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1036 (37%), Positives = 602/1036 (58%), Gaps = 42/1036 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSL EG  S+++ L K       ++A+TD  N+F A+EF QKA   GI+P
Sbjct: 4    NFVHLNLHTEYSLSEGVNSIDSFLVKAKELGMTSLAVTDYANMFCAIEFYQKAKKMGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L I  +D              + S+ LL     GY+ L++L S +Y  ++ ++  
Sbjct: 64   IIGLELPITNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRELK 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRLYVNLQ 187
             +    L+E  ++ LI L+   +G I +A   NSS     K +  + ++F  +  Y+ +Q
Sbjct: 113  -LNKEILKE-HSQDLIALSSSMNGEIGKAILTNSSDEKVNKIIDEYIEIFSKENFYLEIQ 170

Query: 188  RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   + +    +   LA  H+L LVATNN  ++  + YE HD+++ +     V +K+R 
Sbjct: 171  ANELSETKIINDKFYDLAKFHDLELVATNNVYYVDRDGYELHDIIICIQSGLKVKEKNRK 230

Query: 247  RV-TPDHYLKNRSEMVS-IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R  + + YLK++ EM   +     +A+EN   IA  C+  +       P +   E     
Sbjct: 231  RAISKELYLKSKDEMKRFLGEKFEKAIENANYIASLCNIEITFGNLQFPYY---EVPSEY 287

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L+      ++    +         +D   RL++EL+VI +M +SGYF++V DFI
Sbjct: 288  SGMDEYLKTICHTNIKKLYKEDL------TKDILDRLEYELSVIIKMGYSGYFIVVWDFI 341

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD DID C+
Sbjct: 342  SYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICR 401

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+L KLI     
Sbjct: 402  ERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLISPFQT 461

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               +L+   ++    +    D  + ++++++ ++E   RH STHAAGI+I    L + VP
Sbjct: 462  LEKTLK---ENVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILITKEDLDRTVP 518

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL  IP 
Sbjct: 519  IYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDLYKIPL 578

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPGP+ + +V  +
Sbjct: 579  DDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQSGMVDDF 638

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRAMGKK 
Sbjct: 639  INRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRAMGKKN 698

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               M + +E+FI  A  NG ++  +  IFEL+ KFA YGFNKSH+ AYA+ISY TA+ K 
Sbjct: 699  FAIMRENREKFIERAVHNGYTEEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWTAYFKV 758

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP  + AA MT E+     I  +  DA++  +++  P++N+P   F+V ++ I YSLAA
Sbjct: 759  HYPAYYYAAVMTSEISETGDIAYYFNDAKEHEVRVYSPNINSPSAYFEVKNDGITYSLAA 818

Query: 842  IKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GALD    +R +
Sbjct: 819  IKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIKGNRKE 878

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
               S+D +  Y+    K    +  N+F     T  DK  L          +   E+  LG
Sbjct: 879  KFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKTI-DKFNLAISEDFTLDEKLNKEKEFLG 937

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            FY S HPLD YK IL    IK   E    + GN + +    +++ ++  T+K  ++    
Sbjct: 938  FYLSSHPLDKYKDILTTFSIKKLSEF--DLEGNQVIKTFGTIINLKKIITKKEEQMAMFN 995

Query: 1020 FS--EPAKEYEANFFP 1033
             S  +         FP
Sbjct: 996  LSCYDRT--LSCIAFP 1009


>gi|238650797|ref|YP_002916652.1| DNA polymerase III subunit alpha [Rickettsia peacockii str. Rustic]
 gi|238624895|gb|ACR47601.1| DNA polymerase III subunit alpha [Rickettsia peacockii str. Rustic]
          Length = 1181

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1081 (38%), Positives = 625/1081 (57%), Gaps = 79/1081 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++  ++++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I            K        I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNI------------KYDIDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L E   EGLI L   + G + +     + + A       +++ GDR Y  + R
Sbjct: 111  DHIDFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +++ E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y ++  EM+ +FSDLP A++NTV +  RC F    + P+LP F  K+       E
Sbjct: 230  VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATKDI-----SE 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
             + ++  A  GL  RLA    ++    +       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIKKDAKEGLLARLATKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVSLQ-AIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PVSL+ A+ +      A   +           +  +++ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVSLKQALHEVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDSNSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAA+Y 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VISYQTA++K +YP EFL A + LE++N +KI  F Q+A+   I+I+ P++N     F V
Sbjct: 765  VISYQTAYLKANYPAEFLVACLNLELNNHDKINFFLQEAKDNGIKIIAPNINISEGYFSV 824

Query: 831  G------------------------------------DNRIYYSLAAIKGVGTTTARHIM 854
                                                    I ++L AIKGV     + + 
Sbjct: 825  KFSDTVIPHSVKPVIPRLDRGIQEISKDTVVKPRYDIAGAIIFALGAIKGVTPNFGKLVT 884

Query: 855  -EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
             E  A   F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QLL S+  +  Y+ 
Sbjct: 885  DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
               + + +   ++   +  + S  I +     + +++ F  E   +G + S HPL  Y+ 
Sbjct: 945  AYHEEQESNQFSL--IKVSSLSPTILVSSDYADKNTLAF-YEFEAMGLFISNHPLTEYQE 1001

Query: 974  ILRKMGIKGYEESV-ATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            I  ++ I    +       G N + LA ++  K  + + +G R   +  S+P   +E + 
Sbjct: 1002 IFSRLNILNTADLHNNLPDGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSI 1060

Query: 1032 F 1032
            F
Sbjct: 1061 F 1061


>gi|260495663|ref|ZP_05815787.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium sp.
            3_1_33]
 gi|260196846|gb|EEW94369.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium sp.
            3_1_33]
          Length = 1133

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1035 (36%), Positives = 597/1035 (57%), Gaps = 40/1035 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSL EG  S++N L K       ++A+TD  N+F A+EF QKA   GI+P
Sbjct: 4    NFVHLNLHTEYSLSEGVNSIDNFLIKAKELGMTSLAVTDYANMFCAVEFYQKAKKMGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +  +D              + S+ LL     GY+ L++L S +Y  ++ ++  
Sbjct: 64   IIGLELPVFNKDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRELK 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLF-GDRLYVNLQ 187
             +    L+E  ++ LI L+   +G I +A   NSS      ++  + ++F  +  Y+ +Q
Sbjct: 113  -LNKEILKEY-SQDLIALSSSINGEIGKAILTNSSDEKINSIINEYIEIFSKENFYLEIQ 170

Query: 188  RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   + +    ++  LA  + L LVATNN  ++  + YE  D+++ +     V +K+R 
Sbjct: 171  ANELTETKIINDKLYDLAEFYNLELVATNNVYYVDRDGYELQDIIICIQSGLKVKEKNRK 230

Query: 247  RV-TPDHYLKNRSEMVS-IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R  + + YLK++ EM   +     +A+ENT  IA  C+  +       P +   E     
Sbjct: 231  RAISKELYLKSKDEMKRFLGEKFEKAIENTNHIASLCNVEITFGNLQFPYY---EVPSEY 287

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L+      ++    +         +D   RL++EL+VI +M +SGYF++V DFI
Sbjct: 288  SGMDEYLKTICHTNIKKLYKEDL------TKDILDRLEYELSVIIKMGYSGYFIVVWDFI 341

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD DID C+
Sbjct: 342  SYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICR 401

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+L KLI     
Sbjct: 402  ERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLISPFQT 461

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               +L+   ++    +    D  + ++++++ ++E   RH STHAAGI+I    L + VP
Sbjct: 462  LEKTLK---ENVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILITKEDLDRTVP 518

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL  IP 
Sbjct: 519  IYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDLYKIPL 578

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPGP+ + +V  +
Sbjct: 579  DDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQSGMVDDF 638

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRAMGKK 
Sbjct: 639  INRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRAMGKKN 698

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               M + +E+FI  A KNG +   +  IFEL+ KFA YGFNKSH+ AYA+ISY TA+ K 
Sbjct: 699  FAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWTAYFKV 758

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP  + AA MT E+     I  +  DA++  +++  P++N+P   F+V ++ I YSLAA
Sbjct: 759  HYPAFYYAAVMTSEISETGDIAYYFNDAKEHGVRVYSPNINSPSAYFEVKNDGITYSLAA 818

Query: 842  IKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GALD    +R +
Sbjct: 819  IKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIKGNRKE 878

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
               S+D +  Y+    K    +  N+F     T  DK  L          +   E+  LG
Sbjct: 879  KFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKTI-DKFNLAISEDFTLDEKLNKEKEFLG 937

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S HPLD YK I+    I    E +       ++    + + ++  T+K  ++     
Sbjct: 938  FYLSSHPLDRYKDIILAFKINKLSE-IDLEGNQGVKTFGTITNLKKIITKKEEQMAMFNL 996

Query: 1021 S--EPAKEYEANFFP 1033
               +         FP
Sbjct: 997  ICYDRT--ISCIAFP 1009


>gi|256846853|ref|ZP_05552308.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium sp.
            3_1_36A2]
 gi|256717819|gb|EEU31377.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium sp.
            3_1_36A2]
          Length = 1132

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1035 (36%), Positives = 597/1035 (57%), Gaps = 40/1035 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSL EG  S+++ L K       ++A+TD  N+F A+EF QKA   GI+P
Sbjct: 3    NFVHLNLHTEYSLSEGVNSIDSFLVKAKELGMSSLAVTDYANMFCAVEFYQKAKKMGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L I  +D              + ++ LL     GY+ L++L S +Y  ++ ++  
Sbjct: 63   IIGLELPISNRDE-----------QNIFTLTLLAKNYNGYKNLVKLASELYKKNENRELK 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRLYVNLQ 187
             I    L++  ++ LI+L+   +G I +A   +SS     K +  + ++F  +  Y+ +Q
Sbjct: 112  -INKEVLKKY-SQDLIVLSSSINGEIGKAILTDSSDEKINKIIDEYIEMFSKENFYLEIQ 169

Query: 188  RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   + +    +   LA  + L LVATNN  ++ ++ YE  D+++ +     V +++R 
Sbjct: 170  ANELPETKIINDKFYNLAKLNGLELVATNNVYYVDKDGYELQDIIICIQSGLKVKERNRK 229

Query: 247  RV-TPDHYLKNRSEMVS-IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            +  + + YLK++ EM   +     +A+EN   IA  C+  +       P +   E     
Sbjct: 230  KAISKELYLKSKEEMQRFLGEKFEKAIENANHIADLCNVEISFGNLQFPYY---EVPSEY 286

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L+      ++         K    +D   RL++EL+VI +M +SGYF++V DFI
Sbjct: 287  SGMDEYLKTICHTNIKKLY------KENLTKDILDRLEYELSVIIKMGYSGYFIVVWDFI 340

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD DID C+
Sbjct: 341  SYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICR 400

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+L KLI    A
Sbjct: 401  ERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLISPFQA 460

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               +L+   ++    +    D  + ++++++ ++E   RH STHAAGI+I    L + VP
Sbjct: 461  LERTLK---ENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGILITKEDLDRTVP 517

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL  IP 
Sbjct: 518  IYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDLYKIPL 577

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD + +H+L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPGP+ + +V  +
Sbjct: 578  DDKKVFHMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQSGMVDDF 637

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRAMGKK 
Sbjct: 638  INRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRAMGKKN 697

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               M + +E+FI  A  NG ++  +  IFEL+ KFA YGFNKSH+ AYA+ISY T + K 
Sbjct: 698  FAIMRENREKFIERAINNGYTEEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWTGYFKV 757

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP  + AA MT E+     I  +  D ++  I++  P+VN+P   F+V +  I YSLAA
Sbjct: 758  HYPAYYYAAVMTSEISETGDIAYYFNDTKEHGIRVYSPNVNSPSAYFEVKNEGITYSLAA 817

Query: 842  IKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GALD    +R +
Sbjct: 818  IKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIKGNRKE 877

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
               S+D +  Y+    K    +  N+F     T  DK  L          +   E+  LG
Sbjct: 878  KFLSIDKVLDYSSKASKTDEIQQMNLFGEAAKTI-DKFNLAISEDFTLDEKLNKEKEFLG 936

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S HPLD YK IL    IK   E +       ++    + + ++  T+K  ++     
Sbjct: 937  FYLSSHPLDRYKDILITFSIKKLSE-IDLEEKQVVKTFGTITNLKKIITKKEEQMAMFNL 995

Query: 1021 S--EPAKEYEANFFP 1033
               +         FP
Sbjct: 996  ICYDRT--ISCIAFP 1008


>gi|297529096|ref|YP_003670371.1| DNA polymerase III subunit alpha [Geobacillus sp. C56-T3]
 gi|297252348|gb|ADI25794.1| DNA polymerase III, alpha subunit [Geobacillus sp. C56-T3]
          Length = 1092

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1025 (38%), Positives = 584/1025 (56%), Gaps = 51/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL V S YSL + A ++  +  +       A+A+TD N L+ A+ F ++    GI+PI
Sbjct: 2    FVHLHVLSGYSLFQSAAAVEALAARAKQLGYQALALTDRNVLYGAIPFYRECKQNGIRPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG   D+ +         G+  FP    +VLL +  EGY+ L+E+ + M    Q  ++  
Sbjct: 62   IGVTADVALS--------GEEAFP----LVLLAANEEGYRHLLEISTMM----QMGETKH 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +  + L  + + G+I +T GS G ++        + A++ L  + +LF  RLYV +QR  
Sbjct: 106  MEEAALVRL-SGGIIAITPGSEGRVESLVAAGEWERAKEALGRYHQLFPGRLYVAVQRGE 164

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                  E+ ++QLA    +P+VATN+  ++   D  A   L A+    +++  +      
Sbjct: 165  QTRAPYEAGLLQLAEETGVPIVATNDVRYVERSDAVAWRCLQAIGRGALLADIEDDN--- 221

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              YL    EM   F+DLPEALEN++ IA +C   ++     LP +   + +      ++ 
Sbjct: 222  GRYLAGPEEMARRFADLPEALENSLAIADQCELQIEFGGWRLPAYPVPDGE----TADSY 277

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  +  GL  R+           + Y +RL  EL+VI  + FS YFLIVAD + +A++ 
Sbjct: 278  LRRLSEQGLARRVPSA-------DERYWRRLSHELDVIQSLHFSDYFLIVADVLAYARRR 330

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I  GPGRGS AGS+ AYAL+ITD+DP+++ LLFERFLNP+R S+PD D+DF   RR+EV
Sbjct: 331  GILTGPGRGSAAGSLVAYALSITDVDPIKYGLLFERFLNPERASVPDIDLDFPDGRREEV 390

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV +KYG +RVAQIITFG+  AKAALR+  +AL +P  + +++  L+P+  +  +  Q
Sbjct: 391  IRYVADKYGRDRVAQIITFGTFGAKAALRETAKALGVPGREAEQVAALLPSKQSVTLR-Q 449

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
              A+ + FR A  A P     L ++QKLEGL RH S HAAG++I   PL + VP+     
Sbjct: 450  WHAESAAFRRAVAAVPQGREWLAVAQKLEGLPRHTSIHAAGVIISPEPLVRFVPLQ-PSH 508

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
             + P+TQ+ M  +E  GL+K DFLGL+TLTL+++ +  +  Q G   D+  +P +D +TY
Sbjct: 509  GEWPLTQYAMGALEALGLLKIDFLGLRTLTLIEQIVRLIERQTGKPFDIRTLPLNDEKTY 568

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T GIFQLESSGM++ L  ++P   ED++A+ +LYRPGP+  I VY  RK G+E
Sbjct: 569  ALLGAGDTNGIFQLESSGMKRILAELRPSEFEDVVAVNALYRPGPMQMIPVYIRRKRGEE 628

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +  IHP + P+L  T GV+IYQEQ+MQIA  L+G+SL +ADVLRRA+ KK K  + KQ+
Sbjct: 629  PVEYIHPDLAPILAPTYGVLIYQEQIMQIAARLAGFSLGQADVLRRAVAKKEKALLAKQR 688

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F++G + NG  K IA  +++ +A+FADYGFN+SHA +YA++SY  A+MK HYP+ F A
Sbjct: 689  QAFVAGCAANGYPKEIAEELYQHIARFADYGFNRSHAVSYALLSYAMAYMKAHYPLCFYA 748

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +T    + EK   +  +A +  I ++ PSVN       V  + I   LA +K VG + 
Sbjct: 749  VMLTNASGDREKAAVYYWEAARKGINVLLPSVNKSGFRSSVEGSAIRLGLAMVKQVG-SA 807

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A+ I+E   A+ PF    DF +R+  K L R  LE+L+  GA D FG  R  LL S+D  
Sbjct: 808  AKLIVEERKANGPFADFFDFAARLLPKGLGRPALEALISVGAFDEFGADRASLLASIDIA 867

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             ++AQWV+           A E G  S K           S R   E   LGF  + HP 
Sbjct: 868  IEHAQWVQ-----------ALEAGGLSLKPKYAAAHSWPLSERRRREAEFLGFAVTPHPA 916

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             V +P+L+  G     +    ++G +  +   VV  ++ +T++G  + + T  + + E E
Sbjct: 917  AVCRPLLQAAGAVCVAD----VQGPSTVVGGAVVRIRKTRTKQGEEMAFFTVGDESGELE 972

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 973  AVAFP 977


>gi|299822765|ref|ZP_07054651.1| DNA-directed DNA polymerase III alpha subunit [Listeria grayi DSM
            20601]
 gi|299816294|gb|EFI83532.1| DNA-directed DNA polymerase III alpha subunit [Listeria grayi DSM
            20601]
          Length = 1110

 Score =  916 bits (2367), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1031 (35%), Positives = 580/1031 (56%), Gaps = 44/1031 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQV S++ LL    SL+ ++ K  A    ++AITD N L+ A+ F +K  AA I+P
Sbjct: 2    GFVHLQVKSAFDLLSSTASLDALIAKAKACGFDSLAITDKNALYGAVNFYEKCQAAQIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  + +           G         ++LL  T  GYQ L+++ S +   D+     
Sbjct: 62   IIGMTVSVY----------GYIDTTRSYELLLLAETTAGYQNLLKIASAIQTQDE----K 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             + L+WL+  G +GLI ++ G++G ++     +S + A +    ++ +F  D  ++++Q 
Sbjct: 108  VLPLNWLKAYG-KGLIAISPGATGEVEHLLMDSSPESAAEVTAYWQSIFSQDSFFLSIQ- 165

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   +  V   +   E+ +V T +  +L   D  A +VLMA+  +  V  +  P  
Sbjct: 166  --AENPRLKEAVQNFSSAQEIDVVLTKDVQYLDAGDVRAQEVLMAIRDNRTVDYEKLPLA 223

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P+ +L +  EM +        +A E T +IA RC  ++ +   +LPRF  +   +    
Sbjct: 224  GPN-FLASADEMAASLTTDFEQQAYEQTAKIAARCQVVIPMGLQLLPRFPLRSGSNASA- 281

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               EL   A+AGL+ R            + Y  RL +EL+VI +M F  YFLIV D +++
Sbjct: 282  ---ELEKLALAGLQER-------NVARDKRYLDRLHYELDVITKMGFQDYFLIVWDVMRF 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I  GPGRGS AGS+ +YAL ITD+DP+ + LLFERFLNP+R++MPD D+DF  +R
Sbjct: 332  AREVGILTGPGRGSAAGSLVSYALRITDVDPIAYRLLFERFLNPERVTMPDIDLDFPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVIRYV +KYG + VAQI TFG+L AKAA+RD  R   +    +    K+IP+     
Sbjct: 392  RDEVIRYVVDKYGADHVAQIGTFGTLAAKAAIRDTARTFGLNAVLLSEWSKMIPSQLGIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A   + R      +    + + EI++KLEGL RH STHAAGIVI D PL    P+ 
Sbjct: 452  LKA-AREQNPRLNSHIHSSHVNEMIWEIAEKLEGLPRHISTHAAGIVINDEPLVTYTPVQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQ+ M  +E+ GL+K DFLGL+ L+LL + L  +   R   + L+ IP +D
Sbjct: 511  -SGSGDARLTQYAMGELERIGLLKMDFLGLRNLSLLDRILKIVNYNRTKPLTLADIPLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T +L     T G+FQ ESSG+R+ L  ++P   EDI+A+ +LYRPGP++ I  +  RK
Sbjct: 570  KATLNLFQKGDTTGVFQFESSGIRRVLRKLKPTSFEDIVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+EKIV  H  +  +L  T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK +E +
Sbjct: 630  HGEEKIVYPHEDLKQILDVTYGVIVYQEQIIQVANRMAGFSLGEADILRRAVSKKKREVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D  +++F+SGA+ NG ++T A  +++L+ +FA+YGFN+SHAAAY+ I++Q A++K HYP 
Sbjct: 690  DGFRKQFVSGANANGYAETTANEVYDLIVRFANYGFNRSHAAAYSKIAFQLAYLKAHYPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKG 844
             F+++ ++    N EKI ++  +A+ + I+++ PSVN     F+V   N+I YSL  I+ 
Sbjct: 750  AFMSSLLSSVFGNDEKIAQYVTEAKNYGIEMLAPSVNKSGYYFQVEQENKIRYSLRIIRK 809

Query: 845  VGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            V       ++       PF    DFC R+ +  L  +VLE+L++AGA D FG  R  L+ 
Sbjct: 810  VPNKFILELLNVRKQGGPFADFFDFCERMPNNMLTHQVLEALIYAGAFDEFGKDRAVLMA 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-SDKITLEKFSVENSSVRFENEQRVLGFY 962
            S++   +Y     ++      N+FA E     S K    +        + + E+   G Y
Sbjct: 870  SIETGLQYTDLFGESEAG--MNLFATEDSFLKSMKPKYREADPMPMDTKLDKEKEFTGQY 927

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             S HP+  Y+ + + + +    E      GN+  +A  V   +  +T+KGS++ ++T S+
Sbjct: 928  VSAHPVTSYQQVAQTLAVT---ELADVTNGNSYAIAVYVHQIKTVRTKKGSQMCFLTISD 984

Query: 1023 PAKEYEANFFP 1033
             +KE+ A  FP
Sbjct: 985  ASKEFRAVVFP 995


>gi|309790186|ref|ZP_07684758.1| DNA polymerase III, alpha subunit [Oscillochloris trichoides DG6]
 gi|308227771|gb|EFO81427.1| DNA polymerase III, alpha subunit [Oscillochloris trichoides DG6]
          Length = 1269

 Score =  915 bits (2365), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1068 (32%), Positives = 536/1068 (50%), Gaps = 70/1068 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F+HL VHS YSLL+G  S   I  + A     +IA+TD   ++ A+EF   A  AGI+P
Sbjct: 3    DFIHLHVHSEYSLLDGYASTKAIAGRAAELGMDSIALTDHGVMYGAMEFYDAAKKAGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG +  +      + T +G         ++LL     GY+ L+ L +R +L    K   
Sbjct: 63   IIGMEAYMAPGSRTEATTRGGK---NYFHLLLLAKNEVGYRNLVRLTTRAHLDGMAKGVF 119

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               RI    L++   EGL++ +   +G + +       + A +    ++ L   +  ++ 
Sbjct: 120  ARPRIDRELLEQYH-EGLVVTSACIAGEVIQQLTAQQRKQAVETAAYYRDLLGAENYFLE 178

Query: 186  LQRHRGYDRY--RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            LQ H           ++V++     +PLV TN++ F+  ED E    +MA+  +    + 
Sbjct: 179  LQLHENTPELEGINDELVRIGEELGIPLVVTNDTHFVRAEDVETQHRVMAMGMNMTHQEF 238

Query: 244  DRPRVTPDHYLK--NRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKEC 300
                   D      +  EM + F     A LENT  IA  C+  L      LP+F   E 
Sbjct: 239  CNKGFKMDESYHIMSGEEMWAKFKRYGTAPLENTRRIADMCNLKLDFGRVQLPQFDLPEG 298

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D      + LR     GL  R        G    +Y  RLD EL+VI    F  Y LIV
Sbjct: 299  HDA----ASYLRLVCEEGLMKRC------NGNPPANYIARLDDELDVINATGFPDYMLIV 348

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D++++A+   IP  P RGS   S+  Y L ITD+DP++  LLFERFL+ +R+ MPD D 
Sbjct: 349  WDYVKYARSRGIPCLP-RGSAGASLVLYCLGITDVDPVQNKLLFERFLSRERLEMPDIDT 407

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR E++ Y+  KYG E VAQIIT+G+L AKAALRD+GR L +  S+VDR+ KLIP
Sbjct: 408  DFADSRRGEILDYIAGKYGRENVAQIITYGTLGAKAALRDMGRVLGVELSEVDRVAKLIP 467

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P      QA+      ++     P +  +++ ++K+EG  R+  THA G+V+   PL 
Sbjct: 468  SLPVGVTISQALERVPELKQIYTTQPHLAEVIDWAKKVEGRMRNVGTHACGVVVSRTPLE 527

Query: 541  QLVPMYRDVRSDLPVTQ-FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
            ++VP+ R  + +  V   F    + K GL+K D LGL  L+++ ++L+++ +  G+K++L
Sbjct: 528  EMVPLQRTTKDEHAVMASFEGPTLAKMGLLKMDILGLTNLSVVAEALNYIERSTGIKMEL 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +T+  L    T  +FQLES+GM + L  ++P  ++D+ A+V+LYRPGP++ I
Sbjct: 588  ADIPLEDKKTFEALGRGETKNVFQLESAGMTRYLMQLKPTRVDDLYAMVALYRPGPLEQI 647

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y   KN    I  +HP++ P+L++T GVI+YQEQ+MQ+ Q ++ Y+L +A ++ +A+ 
Sbjct: 648  PHYIQGKNDPANITYLHPILKPILEDTYGVIVYQEQIMQLLQTVADYTLGQAYIVIKAIS 707

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK KE M +   +F  G  K GIS  +A  ++EL+  FA Y FN+ HA  Y ++SYQTAW
Sbjct: 708  KKNKELMAENGAKFKEGCLKKGISAQVADELWELILPFAGYSFNRPHATLYGLLSYQTAW 767

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831
            +K +YPVE++AA +T     +E + K   + R+  + ++PP VN     F++        
Sbjct: 768  LKVNYPVEYMAAVLTGAGGVIEDVAKAALETRRLGVALLPPDVNHSQKGFEIEPIQGQLP 827

Query: 832  -----DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                  N I + LAAIK VG      I+EA      F +LED C+RVD   +N+RVLESL
Sbjct: 828  NGVRYQNAIRFGLAAIKNVGEGPLDAILEARTEGGAFSTLEDLCARVDRNAINKRVLESL 887

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-------DKI 938
            + AGALD    +R Q L  LD     A   +K R     ++F     +          +I
Sbjct: 888  IKAGALDSLPGTRRQKLTVLDQAISAATEAQKARDVGQASLFDMMGESSGNDGSINVPRI 947

Query: 939  TLEKFSVENSSVR-------------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
             L   +   + ++               N+           P+      +   GI    E
Sbjct: 948  NLPPITTTPADMKEELLWERELLGLNITND-----------PVSQALTGVNWTGITRLNE 996

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G + +   ++   +   T+KG  +      +     E   FP
Sbjct: 997  ITEEHIGKSFKFIGLLSGVRHISTKKGDAMLVGVVDDATGTIEMVVFP 1044


>gi|157829043|ref|YP_001495285.1| DNA polymerase III subunit alpha [Rickettsia rickettsii str. 'Sheila
            Smith']
 gi|165933767|ref|YP_001650556.1| DNA polymerase III subunit alpha [Rickettsia rickettsii str. Iowa]
 gi|157801524|gb|ABV76777.1| DNA polymerase III subunit alpha [Rickettsia rickettsii str. 'Sheila
            Smith']
 gi|165908854|gb|ABY73150.1| DNA polymerase III alpha subunit [Rickettsia rickettsii str. Iowa]
          Length = 1181

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1081 (38%), Positives = 625/1081 (57%), Gaps = 79/1081 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++  ++++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I            K        I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNI------------KYDIDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L E   EGLI L   + G + +     + + A       +++ GDR Y  + R
Sbjct: 111  DHINFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +++ E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y ++  EM+ +FSDLP A++NTV +  RC F    + P+LP F  K+       E
Sbjct: 230  VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATKDI-----SE 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
             + ++  A  GL  RLA    ++    +       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIKKDATEGLLARLAAKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PVSL QA+ +      A   +           +  +++ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDSNSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAA+Y 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VISYQTA++K +YP EFL A + LE++N +KI  F Q+A+   I+I+ P++N     F V
Sbjct: 765  VISYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824

Query: 831  G------------------------------------DNRIYYSLAAIKGVGTTTARHIM 854
                                                    I ++L AIKGV     + + 
Sbjct: 825  QFSDTVIPHSVKPVIPRLDRGIQEISKDTVVKPRYNIAGAIIFALGAIKGVTPNFGKLVT 884

Query: 855  -EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
             E  A   F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QLL S+  +  Y+ 
Sbjct: 885  DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
               + + +   ++   +  + S  I +     + +++ F  E   +G + S HPL  Y+ 
Sbjct: 945  AYHEEQESNQFSL--IKVSSLSPTILVSSDYADKNTLAF-YEFEAMGLFISNHPLTEYQE 1001

Query: 974  ILRKMGIKGYEESV-ATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            I  ++ I    +       G N + LA ++  K  + + +G R   +  S+P   +E + 
Sbjct: 1002 IFSRLNILNTADLHNNLPDGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSI 1060

Query: 1032 F 1032
            F
Sbjct: 1061 F 1061


>gi|15893134|ref|NP_360848.1| DNA polymerase III subunit alpha [Rickettsia conorii str. Malish 7]
 gi|81595527|sp|Q92GB2|DPO3A_RICCN RecName: Full=DNA polymerase III subunit alpha
 gi|15620342|gb|AAL03749.1| DNA polymerase III alpha chain [Rickettsia conorii str. Malish 7]
          Length = 1181

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1081 (38%), Positives = 623/1081 (57%), Gaps = 79/1081 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++  ++++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I            K        I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNI------------KYDIDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L E   EGLI L   + G + +     + + A       +++ GDR Y  + R
Sbjct: 111  DHIDFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +++ E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y K+  EM+ +FSDLP A++NTV +  RC F    + P+LP F  +        E
Sbjct: 230  VSENCYFKSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATENI-----SE 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
             + ++  A  GL  RLA    ++    +       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIKKDAKEGLLARLATKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PVSL QA+ +      A   +           +  +++ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ +  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDANSDMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHELLQPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAA+Y 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VISYQTA++K +YP  FL A + LE++N +KI  F Q+A+   I+I+ P++N     F V
Sbjct: 765  VISYQTAYLKANYPAAFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824

Query: 831  G------------------------------------DNRIYYSLAAIKGVGTTTARHIM 854
                                                    I ++L AIKGV     + + 
Sbjct: 825  KFSDTVIPHSVKPVIPRLDRGIQKISKDTVVKPRCDIAGAIIFALGAIKGVTPNFGKLVT 884

Query: 855  -EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
             E  A   F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QLL S+  +  Y+ 
Sbjct: 885  DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
               + + +   ++   +  + S  I +     + +++ F  E   +G + S HPL  Y+ 
Sbjct: 945  AYHEEQESNQFSL--IKVSSLSPTILVSSDYADKNTLAF-YEFEAMGLFISNHPLTEYQE 1001

Query: 974  ILRKMGIKGYEESV-ATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            I  ++ I    +       G N + LA ++  K  + + +G R   +  S+P   +E + 
Sbjct: 1002 IFSRLNILNTADLHNNLPDGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSI 1060

Query: 1032 F 1032
            F
Sbjct: 1061 F 1061


>gi|68171940|ref|ZP_00545254.1| DNA polymerase III alpha subunit [Ehrlichia chaffeensis str. Sapulpa]
 gi|67998637|gb|EAM85376.1| DNA polymerase III alpha subunit [Ehrlichia chaffeensis str. Sapulpa]
          Length = 1074

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 446/986 (45%), Positives = 638/986 (64%), Gaps = 44/986 (4%)

Query: 54   SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
             +LEFS  A + G+QPIIGC + +                 ++  +VLLV    GY  ++
Sbjct: 2    GSLEFSDYASSLGVQPIIGCNIMMSYNG------------DSIGELVLLVKDQIGYNNIV 49

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRL 171
             LVS  +   Q  +  R+ L  L ++  +G+I+LTGG  G + +    N     + +K L
Sbjct: 50   NLVSNSFKDSQSNKVNRVDLEKLIDL-KDGIIVLTGGHDGFLSQLLLGNVIDYGIIDKLL 108

Query: 172  LTFKKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            L     F   LYV LQRH   +    E  +V  AY  +LPLVATN+ LF  + D+ AHDV
Sbjct: 109  LA----FNGNLYVELQRHGMEEEKIIEKTLVNFAYEKDLPLVATNDVLFAKKNDFLAHDV 164

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            L  ++    ++Q+ R   T +HY K+  EM  +F D+PEA+ NTV IA+RCSF+ +   P
Sbjct: 165  LSCISDGNYIAQEGRKMFTEEHYFKSSDEMYRLFKDIPEAVSNTVLIAQRCSFMPETRKP 224

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +LP F         K E  EL ++A+ GL+ RL   +++    ++ Y +RL +EL++I  
Sbjct: 225  MLPHFPCSSG----KNESQELISQAINGLDNRLKSKSLSTEQVSKYY-ERLHYELDIIIS 279

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M ++GYFLIV+DFI W+K+N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNP
Sbjct: 280  MDYAGYFLIVSDFICWSKRNDIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNP 339

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            DR+SMPDFDIDFCQ++RD VI YV+ KYG   VA IITFG LQAKA LRDVGR +QMPY 
Sbjct: 340  DRISMPDFDIDFCQEKRDYVIEYVRKKYG--YVAHIITFGKLQAKAVLRDVGRVMQMPYF 397

Query: 471  QVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            QVDR+CK+IP++P  PV+L +AI  D   ++ +  D +V +LLEIS KLEGLYRH S HA
Sbjct: 398  QVDRICKMIPHNPVKPVTLSEAIEMDKNLQKEQDDDETVAKLLEISLKLEGLYRHVSIHA 457

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            AGIVI DR L +L+P+Y D  S LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ +    +
Sbjct: 458  AGIVICDRELEELLPLYYDSTSSLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICHLV 517

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
             + G  VD+S IP +D +TY +L+   ++G+FQLESSGMR+ +  ++PD I DIIAL+SL
Sbjct: 518  NRGGHSVDISRIPLNDRKTYEMLSAGDSVGVFQLESSGMREVISKLKPDNINDIIALISL 577

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP+DNI +Y  RK+G EK   IHP+++ +L+ET GVIIYQEQVM+IA++++GYSL E
Sbjct: 578  YRPGPMDNISIYIARKHGFEKPDYIHPILEDVLRETFGVIIYQEQVMEIAKIMAGYSLGE 637

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKKIKEEMD Q+  FI+GA  NGI +  A  IF+L+AKFA YGFNKSHAAAY
Sbjct: 638  ADLLRRAMGKKIKEEMDNQRRTFINGAVSNGIEEEKASYIFDLVAKFAGYGFNKSHAAAY 697

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+ISYQTA++K +Y +EF  ASM L++ + +K++  C  A+   I+I+PP +N+  V F 
Sbjct: 698  ALISYQTAYLKANYTLEFFTASMNLDIMDKDKLEMLCHQAKLHGIEILPPDINSSKVLFT 757

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            + G + I Y+L A+K VG  +A+ I++   D  +  + DF  RV +K +++R+LES++ A
Sbjct: 758  IEGASSIRYALGALKNVGQHSAKEIVD---DVAYKDIWDFIDRVSTKCVHKRILESIIKA 814

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            G LD    +R QL +S+       ++ + N      ++F  +         L +      
Sbjct: 815  GVLDSIHSNRKQLFESVFLFLDIIEYNKYNANFNQFSLFNDKN-----HYKLSETDDWTK 869

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGI--KGYEESVATIRGNNIRLAAMVVSKQQ 1006
              +  NE   +GFY + HP++ YK +L K+ I    Y++  +    NN+ +  ++ + + 
Sbjct: 870  EEKLNNEFSSIGFYLNHHPMENYKYLLDKLNIGFIHYDDKSSY---NNV-IVGIISNVKV 925

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + T K  +   VT S+P   +E  F+
Sbjct: 926  RSTNK-DKFAVVTLSDPFNIHEIVFY 950


>gi|294782977|ref|ZP_06748303.1| DNA polymerase III, alpha subunit [Fusobacterium sp. 1_1_41FAA]
 gi|294481618|gb|EFG29393.1| DNA polymerase III, alpha subunit [Fusobacterium sp. 1_1_41FAA]
          Length = 1133

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1033 (36%), Positives = 605/1033 (58%), Gaps = 36/1033 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSLLEG  S+++ L +       ++A+TD  N+F A+EF +KA   GI+P
Sbjct: 4    NFVHLNLHTEYSLLEGVNSIDSFLTRAKELGMNSLAVTDYANMFCAIEFYEKAKKMGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +  ++              + ++ LL    EGY+ L++L S +Y     +  +
Sbjct: 64   IIGLELPLYEKEE-----------QNIFTLTLLAKDYEGYKNLVKLASELYKKKDNR-EL 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLF-GDRLYVNLQ 187
            RI    L+E  ++GLI L+    G I +A   N  S+  +K +  + ++F  +  Y+ +Q
Sbjct: 112  RISKEILKE-HSKGLIALSSSMKGEIGKAILMNFPSEKLDKIVDEYIEIFSKENFYLEIQ 170

Query: 188  RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   + +    +  ++A    + LVATNN  ++  + YE  D+++ +     +  K+R 
Sbjct: 171  ANELLETKVINDKFYEIAKLKNIELVATNNVHYVDRDGYELQDIVICIQSGWKLKDKNRK 230

Query: 247  RV-TPDHYLKNRSEMVS-IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R  + + YLK++ EM   +     +A+ENT  IA  C+  ++      P +   E  +  
Sbjct: 231  RAVSKELYLKSKEEMQRSLDERFHKAIENTNYIASLCNLEIKFGNLQFPYY---EVPNQY 287

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L++     ++       I K    +D  +RL++EL+VI +M +SGYF++V DFI
Sbjct: 288  SGMDEYLKSICYENIKK------IYKENLTKDILERLEYELSVIIKMGYSGYFIVVWDFI 341

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AK+N IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD DID C+
Sbjct: 342  AYAKRNGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICR 401

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDE+I YV +KYG ERVA IITFG ++A+AA+RD+GR L +   ++DRL KL+    +
Sbjct: 402  ERRDELIDYVVHKYGRERVAHIITFGRMKARAAIRDIGRVLDIDLKKIDRLSKLV---SS 458

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 + + ++    +    D  + +++++S ++E   RH STHAAGI+I    L + VP
Sbjct: 459  FQTLEKTLKENVEVAKLYTTDIELQKVIDLSIRIENKIRHVSTHAAGILITKEDLDRTVP 518

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +Y D +  +  TQ+ MK +E  GL+K DFLGLK L+ +Q+++D++ + + + ++L  IP 
Sbjct: 519  IYLDEKEGVIATQYQMKELEDLGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDIELYKIPL 578

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD + + +L+   + G+FQLES+G+R+ ++ ++P+ +EDI+AL++LYRPGP+ + +V  +
Sbjct: 579  DDKKVFEMLSQGDSTGVFQLESTGIRKIMKRLKPNKLEDIVALLALYRPGPLQSGMVDDF 638

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRAMGKK 
Sbjct: 639  INRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMANYSLGEADLLRRAMGKKN 698

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               M + +E+FI  A +N  ++  A  IFEL+ KFA YGFNKSH+ AYA+ISY TA++K 
Sbjct: 699  FAIMRENREKFIQRAVENNYTEEKADEIFELIDKFAGYGFNKSHSVAYAMISYWTAYLKA 758

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YP  + AA MT E+     I  +  DA++  I+I PP+VNTP   F++ ++ I YSLAA
Sbjct: 759  YYPAFYFAAIMTSEISETGDIAYYFNDAKEHKIRIYPPNVNTPSAYFEIKNDGISYSLAA 818

Query: 842  IKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK +G   A+ I+E    +  +  L++F  R     +N+R LE+L+ +GALD    +R +
Sbjct: 819  IKNLGLNLAKKIVEDYEKNGVYSKLDEFLIRNKKNGINKRALEALILSGALDELEGNRKE 878

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
               S+D +  Y     K    +  N+F     T + K TL      N   +   E+  LG
Sbjct: 879  KFLSIDKVLDYVSKASKTDEIQQMNLFGEASKTIN-KFTLTSCEDFNLDEKLTKEKEFLG 937

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S HPLD YK I+    I    E +       ++    +   ++  T+K  ++   + 
Sbjct: 938  FYLSSHPLDKYKDIITTFSINKLSE-IDAEESKVLKTFGTITGLKKIITKKEEQMALFSI 996

Query: 1021 SEPAKEYEANFFP 1033
                +      FP
Sbjct: 997  LCYDRAISCIAFP 1009


>gi|15604610|ref|NP_221128.1| DNA polymerase III subunit alpha [Rickettsia prowazekii str. Madrid
            E]
 gi|6226600|sp|O05974|DPO3A_RICPR RecName: Full=DNA polymerase III subunit alpha
 gi|3861305|emb|CAA15204.1| DNA POLYMERASE III, ALPHA CHAIN (dnaE) [Rickettsia prowazekii]
 gi|292572428|gb|ADE30343.1| DNA polymerase III alpha chain [Rickettsia prowazekii Rp22]
          Length = 1182

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1083 (38%), Positives = 615/1083 (56%), Gaps = 82/1083 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++     + PA+ ++D  NLF +LEFS  A    +Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELALLHKMPALCLSDRGNLFGSLEFSLYAVKKKLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I            +        I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNI------------QYDINAFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L +   EG+I L   + G + +       + A       + + GDR Y  + R
Sbjct: 111  EHIGFEDLIKY-QEGVIALCCYTDGIVGKCLLARKQEQAILFARRLQAILGDRFYFEIMR 169

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +++ E+  +Q+A    +P+VATN  LF  +  + AHDVL+ ++        DR  
Sbjct: 170  HDLPEEQFIENSYIQIASELSIPIVATNKVLFSEKSMHYAHDVLLCISEGVTKEYPDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y K+ +EM  +FSDLP A++NT+ +  RC F    + P+LP F  ++        
Sbjct: 230  VSENCYFKSPAEMRKLFSDLPNAIQNTINLRERCYFAAHPNPPMLPNFSTQDI------S 283

Query: 308  ENEL-RNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLI 359
            E  L R  A  GL  RL     A+    +       +Y  RL++EL++I  M F+GYFLI
Sbjct: 284  ETYLIRKYATEGLLARLVTKFKAENISLEHQEKLKTEYFTRLNYELDIICNMNFAGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V+DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFD
Sbjct: 344  VSDFIKWSKKQGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ+RR+EVI YV++KYG  RV QIITFG +QAKA ++DV R L +PY   D L +L+
Sbjct: 404  IDFCQERREEVINYVRSKYGPNRVGQIITFGKMQAKAVIKDVARVLSLPYKLADYLTELV 463

Query: 480  PNDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHA 529
            P    +PVSL QAI +      A   +           +  +L+ S  LEGL+RH+STHA
Sbjct: 464  PFSAINPVSLEQAIREVPELANAAKGNGLYNLEGDAELIKLVLDTSLILEGLHRHSSTHA 523

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            AGIVI    L  +VP+Y+D  +D+ +  ++MK+ E AGLIKFDFLGL+TLT++      L
Sbjct: 524  AGIVIAGTDLVDIVPVYKDANADMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITNCKKLL 583

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
             ++G+K+D   + FDD +TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +L
Sbjct: 584  KEQGIKIDFDDMTFDDKKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGAL 643

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP++NI  Y   K+  ++   +H L++P+L+ET GV+IYQEQV +IAQ+L+GY+L  
Sbjct: 644  YRPGPMENIPTYIACKHKLQQPDYLHKLLEPILEETYGVVIYQEQVQRIAQVLAGYTLGA 703

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKKIK+EM++Q+E F+ GA  N IS + A +IF  +AKFA YGFNK+HAAAY
Sbjct: 704  ADLLRRAMGKKIKKEMEEQEEIFVKGAIANNISPSQAKSIFSTVAKFAGYGFNKAHAAAY 763

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
             VISYQTA++K +YP EFL A + LE++N +KI  F Q+A+   I+I+ P++N     F 
Sbjct: 764  GVISYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFS 823

Query: 830  V-------------------------------------GDNRIYYSLAAIKGVGTTTARH 852
            V                                      ++ I ++L AIKGV     + 
Sbjct: 824  VKSSNTVITHSTKSVISRLNCDIKKIAKDTAVKPLYCKDESTIIFALGAIKGVTANFGKL 883

Query: 853  IM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            +  E  A   F S+ DF  R+  K +N ++LE+L+ AG  D    +R+QL  S+  +  Y
Sbjct: 884  VTDERKARGAFKSITDFIERLPPKSINSKLLENLIKAGCFDELHDNRLQLFLSIPKLIAY 943

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            +    + + +   ++   +  + S  I +     + +++ F  E   +G + S HPL  Y
Sbjct: 944  STSYHQEQESNQFSL--IKVSSLSPTILVSSDYADKNTLAF-YEFEAMGLFLSNHPLTEY 1000

Query: 972  KPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            + I  ++ I    +    +    N + LA ++  K  + + +G R   +  S+P   +E 
Sbjct: 1001 QGIFSRLNILNTRDLYNKLPNGTNRVTLAGVIQKKDSRMSARG-RFVTLVLSDPENIFEL 1059

Query: 1030 NFF 1032
              F
Sbjct: 1060 TIF 1062


>gi|34581196|ref|ZP_00142676.1| DNA polymerase III alpha chain [Rickettsia sibirica 246]
 gi|28262581|gb|EAA26085.1| DNA polymerase III alpha chain [Rickettsia sibirica 246]
          Length = 1181

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1081 (38%), Positives = 624/1081 (57%), Gaps = 79/1081 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++  ++++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I            K        I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNI------------KYDIDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L E   EGLI L   + G + +     + + A       +++ GDR Y  + R
Sbjct: 111  DHIGFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +++ E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y ++  EM+ +FSDLP A++NTV +  RC F    + P+LP F  K+       E
Sbjct: 230  VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATKDI-----SE 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
             + ++  A  GL  RLA    ++    +       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIKKDAKEGLLARLATKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PVSL QA+ +      A   +           +  +++ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHELLQPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAA+Y 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VISYQTA++K +YP  FL A + LE++N +KI  F Q+A+   I+I+ P++N     F V
Sbjct: 765  VISYQTAYLKANYPAAFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824

Query: 831  G------------------------------------DNRIYYSLAAIKGVGTTTARHIM 854
                                                    I ++L AIKGV     + + 
Sbjct: 825  KFSDTVIPHSVKPVIPRLDRGIQEISKDTVVKPRCDIAGAIIFALGAIKGVTPNFGKLVT 884

Query: 855  -EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
             E  A   F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QLL S+  +  Y+ 
Sbjct: 885  DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
               + + +   ++   +  + S  I +     + +++ F  E   +G + S HPL  Y+ 
Sbjct: 945  AYHEEQESNQFSL--IKVSSLSPTILVSSDYADKNTLAF-YEFEAMGLFISNHPLTEYQE 1001

Query: 974  ILRKMGIKGYEESV-ATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            I  ++ I    +       G N + LA ++  K  + + +G R   +  S+P   +E + 
Sbjct: 1002 IFSRLNILNIADLHNNLPDGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSI 1060

Query: 1032 F 1032
            F
Sbjct: 1061 F 1061


>gi|15615731|ref|NP_244035.1| DNA polymerase III alpha subunit [Bacillus halodurans C-125]
 gi|14194680|sp|Q9K838|DPO3A_BACHD RecName: Full=DNA polymerase III subunit alpha
 gi|10175791|dbj|BAB06888.1| DNA polymerase III alpha subunit [Bacillus halodurans C-125]
          Length = 1116

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1028 (35%), Positives = 588/1028 (57%), Gaps = 50/1028 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VH+ VHS Y+LL     +  +++K  A Q  A+A+TD + ++ A+ F +    +G++PII
Sbjct: 4    VHIHVHSEYTLLSSMCRIPALVEKAKAAQFSALALTDRHVMYGAVPFYKACKESGLKPII 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +   ++ +              ++L   + +GY+ L++L + +   ++  +   +
Sbjct: 64   GMETTVRFAEDRE------------SDLLLYARSNKGYEHLLKLSTIIQCREE--KEKYV 109

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL-----YVNL 186
                L     + L ++    SG   RA        A +R   F +   D L     Y+ +
Sbjct: 110  TWEELLAYKDDLLYVI--PYSGGFVRACL---EDEALERGERFIQFLKDHLGGESVYLEI 164

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            Q   G DR +   + QLA    +PLV + +   L  ED +A  V+ A+    +V +  R 
Sbjct: 165  Q---GTDRSKVEPINQLAAKLAIPLVCSQHIQVLEREDLDAWKVIQAIREGVLVEEL-RI 220

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                D      +EM   F   PEAL+NT ++A RC   L +  P LP+F        ++ 
Sbjct: 221  EQEEDVCFFTLTEMEQTFRAYPEALQNTKKLADRCHVELTLGKPRLPKFQTPN----EQS 276

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+ LR     G + R  +         ++  QRL  EL VI RM FS YFLIV DF+++
Sbjct: 277  AEDYLRKLCEQGAKERYGE------EWTKEKAQRLGEELAVIERMGFSDYFLIVWDFMRF 330

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++ +I  GPGRGS AGS+ AY L ITD+DPL + LLFERFLNP+R+S+PD D+DF   R
Sbjct: 331  AREASIVTGPGRGSVAGSLVAYVLFITDVDPLHYDLLFERFLNPERISLPDIDLDFPDHR 390

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI YV+ KYG  RVAQI+TFG+L A+A++RDVG+AL +P + ++++ K I   P   
Sbjct: 391  REEVIVYVKKKYGANRVAQILTFGTLAARASVRDVGKALAIPPNVIEKISKEISGRPGMT 450

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            + ++A  ++ R R+   A     +++++++K+EGL RH STHAAG+VI ++PL++++ + 
Sbjct: 451  L-VKAYNENERLRQLVHASDEAQKVMKLARKVEGLPRHTSTHAAGVVISEQPLTEVIALQ 509

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDD 605
               + ++P+TQ  M+ +E  GLIK DFLGL+ LTLL+  +  + +      ++  +P +D
Sbjct: 510  HG-QGEVPLTQGTMETVEDVGLIKMDFLGLRNLTLLEMVVKRVRETYGHSLNVKQLPLND 568

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T+ LL    T G+FQLES GMR+ L  ++P+   DI+A+ +LYRPGP++ I  Y   K
Sbjct: 569  AKTFALLAKGETTGVFQLESGGMRKVLRELKPNTFADIVAVNALYRPGPMEFIPDYIQGK 628

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G ++I  +HP ++P+L  T GVI+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK  E +
Sbjct: 629  EGTKEITYLHPDLEPILSSTYGVIVYQEQIMQIAAKMAGFSLGEADLLRRAISKKKGEAL 688

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             +Q+E F++GA + G  +  A  I+EL+ +FA+YGFNKSHA AY++++YQ A++K HYP 
Sbjct: 689  RQQEEAFVTGAVRQGYEQETAKKIYELIVRFANYGFNKSHAVAYSMLAYQLAYLKAHYPS 748

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F AA  +   +  EK+++  Q+ +Q  I+++PPS++   + F   +  + + L  ++ V
Sbjct: 749  SFYAALASTIWNQPEKLERLLQEMKQQGIRVLPPSLSKSDIHFSEEEEGVRFPLLPLRYV 808

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 R +++A  + P  SL D CSRVD + +  RV+ESL+ AGALD  G  R  LL ++
Sbjct: 809  SVRAIRELIKARREAPVRSLFDLCSRVDGRIVTSRVMESLIKAGALDELGE-RATLLANI 867

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +   ++A+ V++ + N    +F        ++    K        +   E+  +GFY SG
Sbjct: 868  EEAFQFAEQVKEFQENT-GGLF----QLSVEEPEYIKVEPLTDLEKLAYEKEAVGFYLSG 922

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HPL  Y   LR+     Y E         ++LA M+   ++ +T++G  +G++T S+   
Sbjct: 923  HPLLAYTESLRQYDRLTYLEGTER---RFVKLAGMIHRIRRIRTKRGEVMGFLTMSDETG 979

Query: 1026 EYEANFFP 1033
            E+EA  FP
Sbjct: 980  EWEAVVFP 987


>gi|138896305|ref|YP_001126758.1| DNA polymerase III subunit alpha [Geobacillus thermodenitrificans
            NG80-2]
 gi|134267818|gb|ABO68013.1| DNA polymerase III alpha subunit [Geobacillus thermodenitrificans
            NG80-2]
          Length = 1095

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1027 (35%), Positives = 572/1027 (55%), Gaps = 47/1027 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + +FVHL V S YSL +   ++  ++ K       A+A+TD   L+ A+ F ++    G+
Sbjct: 2    AMTFVHLHVLSGYSLFQSTATVEALVAKAKQLGYRALALTDHQVLYGAIPFYRECQRHGL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG   D+ +                   +VLL +  EGY+ LIE+ + + + ++   
Sbjct: 62   RPIIGMMADVVL-----------DGDSGAFPLVLLAANEEGYRHLIEISTAVQMREE--- 107

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +  + L+ + + G+I +T G +G ++          A++ LL +++LF  RLY+ +Q
Sbjct: 108  -KHVHEAALRRL-SGGIIAITPGLNGRVESFLAAGEVAQAKETLLRYRQLFAGRLYIAIQ 165

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R        ES +++LA    +P+VATN   ++  ED  A   L A+     ++      
Sbjct: 166  RGERTRAPYESALLRLAEETGVPVVATNEVRYVEREDALAWRCLQAIGDGVPLAHI---P 222

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YL    EM   F+DLPEALEN++ IA +C   ++     LP+F   + +      
Sbjct: 223  EEDERYLAALDEMARRFADLPEALENSMNIANQCELHIEFGHWRLPKFPVPDGE----TA 278

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++ LR     GL  R+             YR+RL+ EL++I  M+FS YFLIVAD + +A
Sbjct: 279  DSYLRRLCEQGLARRVPSADAR-------YRERLEHELHIIQTMRFSDYFLIVADVLAYA 331

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I  GPGRGS AGS+ AYAL+ITD+DP+ + LLFERFLNP+R+S+PD D+DF  DRR
Sbjct: 332  RQRGILTGPGRGSAAGSLVAYALSITDVDPIEYGLLFERFLNPERVSVPDIDLDFPDDRR 391

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVIRYV   YG + VAQIITFG+  AKAALR+  + L +   + +R+  L+PN     +
Sbjct: 392  EEVIRYVVETYGRDHVAQIITFGTFGAKAALRETAKVLGVSGREAERVMALLPNKQGVTI 451

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            S Q   + + FR A  A P  +R L I++KLEGL RH S HAAG++I   PL + VP+  
Sbjct: 452  S-QWHRESAAFRRALRALPDGERWLTIAKKLEGLPRHTSIHAAGVIISPDPLMRHVPLQ- 509

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDH 606
                + P+TQ+ M  +E  GL+K DFLGL+TLTLL + +  +  Q G   D+  +P DD 
Sbjct: 510  PSHGEWPLTQYAMGALEALGLLKIDFLGLRTLTLLGQMVRLIERQTGKPFDVRALPLDDE 569

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY LL+   T G+FQLESSGM++ L  ++P  +E+I+A+ +LYRPGP++ I  Y  RK 
Sbjct: 570  KTYALLSAGDTSGVFQLESSGMKRVLAELRPATLEEIVAVNALYRPGPMNMIPTYIRRKR 629

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E I  +HP ++P+L  T GV+IYQEQ+MQIA  ++G+SL +ADVLRRA+ KK K  + 
Sbjct: 630  GEEAISYLHPDLEPILAPTYGVLIYQEQIMQIAARIAGFSLGKADVLRRAVAKKEKALLA 689

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + +E F++G   NG    +A  ++  + +FADYGFN+SHA +Y ++SY  A++K HYP+ 
Sbjct: 690  EHREAFVAGCVANGYPAPMAEELYRQIVRFADYGFNRSHAVSYTLLSYALAYIKAHYPLC 749

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F A  ++    + EK+  +  +A +  I ++PPSVN     F V    I   LA +K VG
Sbjct: 750  FYAVMLSNASGDREKMVLYSYEAARKGIALLPPSVNRSGYRFAVEGEAIRAGLATVKHVG 809

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            +     I E   + PF    DF  R+  K L R  LE+L+ AGA D  G  R  LL S++
Sbjct: 810  SAAKLIIDERKENGPFADFFDFAVRLLPKGLARSALEALISAGAFDELGEERGSLLASIE 869

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
               ++ Q +         ++          K         + + R + E+ +LGF  + H
Sbjct: 870  IAIEHVQLMRPYLEAGGLSL----------KPKYADAPPLSPAERRQREKELLGFAVTPH 919

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P  V +P+ + +      E    + G+ + +   +   ++ +T+ G  + ++T S+ + E
Sbjct: 920  PAAVCRPLFQAVRAVPAAE----VHGSPVVVGGCIAELRKTRTKFGEEMAFITVSDESGE 975

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 976  LEAVAFP 982


>gi|196249927|ref|ZP_03148622.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
 gi|196210441|gb|EDY05205.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
          Length = 1093

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1025 (35%), Positives = 570/1025 (55%), Gaps = 47/1025 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL V S YSL +   ++  ++ K       A+A+TD   L+ A+ F ++    G++P
Sbjct: 2    TFVHLHVLSGYSLFQSTATVEALVAKAKQLGYRALALTDHQVLYGAIPFYRECQRHGLRP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG   D+ +                   +VLL +  EGY+ LIE+ + + + ++     
Sbjct: 62   IIGMMADVVL-----------DGDSGAFPLVLLAANEEGYRHLIEISTAVQMREE----K 106

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +  + L+ + + G+I +T G +G ++          A++ LL +++LF  RLY+ +QR 
Sbjct: 107  HVHEAALRRL-SGGIIAITPGLNGRVESFLAAGEVAQAKETLLRYRQLFAGRLYIAIQRG 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                   ES +++LA    +P+VATN   ++  ED  A   L A+     ++        
Sbjct: 166  ERTRAPYESALLRLAEETGVPVVATNEVRYVEREDALAWRCLQAIGDGVPLAHI---PEE 222

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + YL    EM   F+DLPEALEN++ IA +C   ++     LP+F   + +      ++
Sbjct: 223  DERYLAALDEMARRFADLPEALENSMNIANQCELHIEFGHWRLPKFPVPDGE----TADS 278

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR     GL  R+             YR+RL+ EL++I  M+FS YFLIVAD + +A++
Sbjct: 279  YLRRLCEQGLARRVPSADAR-------YRERLEHELHIIQTMRFSDYFLIVADVLAYARQ 331

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS AGS+ AYAL+ITD+DP+ + LLFERFLNP+R+S+PD D+DF  DRR+E
Sbjct: 332  RGILTGPGRGSAAGSLVAYALSITDVDPIEYGLLFERFLNPERVSVPDIDLDFPDDRREE 391

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VIRYV   YG + VAQIITFG+  AKAALR+  + L +   + +R+  L+PN     +S 
Sbjct: 392  VIRYVVETYGRDHVAQIITFGTFGAKAALRETAKVLGVSGREAERVMALLPNKQGVTIS- 450

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q   + + FR A  A P  +R L I++KLEGL RH S HAAG++I   PL + VP+    
Sbjct: 451  QWHRESAAFRRALRALPDGERWLTIAKKLEGLPRHTSIHAAGVIISPDPLMRHVPLQ-PS 509

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHET 608
              + P+TQ+ M  +E  GL+K DFLGL+TLTLL + +  +  Q G   D+  +P DD +T
Sbjct: 510  HGEWPLTQYAMGALEALGLLKIDFLGLRTLTLLGQMVRLIERQTGKPFDVRALPLDDEKT 569

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y LL+   T G+FQLESSGM++ L  ++P  +E+I+A+ +LYRPGP++ I  Y  RK G+
Sbjct: 570  YALLSAGDTSGVFQLESSGMKRVLAELRPATLEEIVAVNALYRPGPMNMIPTYIRRKRGE 629

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E I  +HP ++P+L  T GV+IYQEQ+MQIA  ++G+SL +ADVLRRA+ KK K  + + 
Sbjct: 630  EAISYLHPDLEPILAPTYGVLIYQEQIMQIAARIAGFSLGKADVLRRAVAKKEKALLAEH 689

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F++G   NG    +A  ++  + +FADYGFN+SHA +Y ++SY  A++K HYP+ F 
Sbjct: 690  REAFVAGCVANGYPAPMAEELYRQIVRFADYGFNRSHAVSYTLLSYALAYIKAHYPLCFY 749

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A  ++    + EK+  +  +A +  I ++PPSVN     F V    I   LA +K VG+ 
Sbjct: 750  AVMLSNASGDREKMVLYSYEAARKGIALLPPSVNRSGYRFAVEGEAIRAGLATVKHVGSA 809

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
                I E   + PF    DF  R+  K L R  LE+L+ AGA D  G  R  LL S++  
Sbjct: 810  AKLIIDERKENGPFADFFDFAVRLLPKGLARSALEALISAGAFDELGEERGSLLASIEIA 869

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             ++ Q +         ++          K         +   R + E+ +LGF  + HP 
Sbjct: 870  IEHVQLMRPYLEAGGLSL----------KPKYADAPPLSPDERRQREKELLGFAVTPHPA 919

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             V +P+ + +      E    + G+ + +   +   ++ +T+ G  + ++T S+ + E E
Sbjct: 920  AVCRPLFQAVRAVPAAE----VHGSPVVVGGCIAELRKTRTKFGEEMAFITVSDESGELE 975

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 976  AVAFP 980


>gi|19704718|ref|NP_604280.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
            nucleatum ATCC 25586]
 gi|19715034|gb|AAL95579.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
            nucleatum ATCC 25586]
          Length = 1133

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1036 (37%), Positives = 602/1036 (58%), Gaps = 42/1036 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSL EG  S+++ L K       ++A+TD  N+F A+EF QKA   GI+P
Sbjct: 4    NFVHLNLHTEYSLSEGVNSIDSFLVKAKELGMTSLAVTDYANMFCAIEFYQKAKKMGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L I  +D              + S+ LL     GY+ L++L S +Y  ++ ++  
Sbjct: 64   IIGLELPITNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRELK 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRLYVNLQ 187
             +    L+E  ++ LI L+   +G I +A   NSS     K +  + ++F  +  Y+ +Q
Sbjct: 113  -LNKEILKE-HSQDLIALSSSMNGEIGKAILTNSSDEKVNKIIDEYIEIFSKENFYLEIQ 170

Query: 188  RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   + +    +   LA  H+L LVATNN  ++  + YE  D+++ +     V +K+R 
Sbjct: 171  ANELSETKIINDKFYDLAKFHDLELVATNNVYYVDRDGYELQDIIICIQSGLKVKEKNRK 230

Query: 247  RV-TPDHYLKNRSEMVS-IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R  + + YLK++ EM   +     +A+EN   IA  C+  +       P +   E     
Sbjct: 231  RAISKELYLKSKDEMKRFLGEKFEKAIENANYIASLCNIEITFGNLQFPYY---EVPSEY 287

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L+      ++    +         +D   RL++EL+VI +M +SGYF++V DFI
Sbjct: 288  SGMDEYLKTICHTNIKKLYKEDL------TKDILDRLEYELSVIIKMGYSGYFIVVWDFI 341

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD DID C+
Sbjct: 342  SYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICR 401

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+L KL+ +   
Sbjct: 402  ERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLVSHSQT 461

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               +L+   ++    +    D  + ++++++ ++E   RH STHAAGI+I    L + VP
Sbjct: 462  LEKTLK---ENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGILITKEDLDRTVP 518

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + +DL  IP 
Sbjct: 519  IYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNVQRTIDYIKKYKNIDIDLYKIPL 578

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPGP+ + +V  +
Sbjct: 579  DDKKVFQMLSLGDSTGVFQLESTGIRKIMKRLKPDKFEDIVALLALYRPGPLQSGMVDDF 638

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRAMGKK 
Sbjct: 639  INRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRAMGKKN 698

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               M + +E+FI  A KNG +   +  IFEL+ KFA YGFNKSH+ AYA+ISY TA+ K 
Sbjct: 699  FAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWTAYFKV 758

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP  + AA MT E+     I  +  DA++  I+I  P++N+P   F+V ++ I YSLAA
Sbjct: 759  HYPAYYYAAVMTSEISETGDIAYYFNDAKEHGIRIYSPNINSPSAYFEVKNDGITYSLAA 818

Query: 842  IKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GALD    +R +
Sbjct: 819  IKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIKGNRKE 878

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
               S+D +  Y+    K    +  N+F     T  DK  L          +   E+  LG
Sbjct: 879  KFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKTI-DKFNLAISEDFTLDEKLNKEKEFLG 937

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            FY S HPLD YK IL    IK   E    + GN + +    +++ ++  T+K  ++    
Sbjct: 938  FYLSSHPLDKYKDILTTFFIKKLSEF--DLEGNQVIKTFGTIINLKKIITKKEEQMAMFN 995

Query: 1020 FS--EPAKEYEANFFP 1033
             S  +         FP
Sbjct: 996  LSCYDRT--LSCIAFP 1009


>gi|110597394|ref|ZP_01385681.1| DNA polymerase III, alpha subunit [Chlorobium ferrooxidans DSM 13031]
 gi|110340938|gb|EAT59409.1| DNA polymerase III, alpha subunit [Chlorobium ferrooxidans DSM 13031]
          Length = 1191

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1074 (34%), Positives = 575/1074 (53%), Gaps = 64/1074 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YS+    +    +    A     ++A+TD   +F+  E   +A  AGI+ 
Sbjct: 2    DFVHLHAHTHYSMQSSPIFPGELFSAAAGFGMKSVAVTDYCAIFNMPELFYEAKNAGIKL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +     L+      +  PT PS+VLLV    GY+ L  L+SR           
Sbjct: 62   IIGSELLL-----LESDTHQHSRIPTSPSLVLLVQNDTGYRNLCILLSRAAKDGFVNGMP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I    L+     GL+ L+  SSG I RA    +   AE     ++++FGD  Y+ LQ+H
Sbjct: 117  HIESRLLEHYHD-GLVCLSAYSSGRIGRALLAGAIDEAETFAAYYQEIFGDNFYLELQQH 175

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247
            +  +D     + + LA    + LVATNN  +L  +D   +  ++A      + SQ  +  
Sbjct: 176  QAPFDEKLNRETIALAEKLSIELVATNNVHYLERKDAGCYRAMVANRTKEKLSSQNLQAL 235

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               DHYLK+  EM  +FSD    L N++ IA +C++      P+LP F   E     ++E
Sbjct: 236  AGSDHYLKSSDEMSRLFSDEHRELSNSLLIAEKCTYTFCQKEPVLPHFPLPEG---FQDE 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L +    G + + A  + A+G   ++ + R++ EL VI +M FS YFLIV+D I  +
Sbjct: 293  FTYLSHLTWEGAKEKYA-DSEAEGISKEEVKSRIELELGVIEKMGFSSYFLIVSDLIAAS 351

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     VGPGRGS AGS+ AY   IT IDPLR+ LLFERFLNP+R SMPD DIDF    +
Sbjct: 352  RTLGYSVGPGRGSAAGSIVAYLTGITRIDPLRYKLLFERFLNPERSSMPDIDIDFTPVGK 411

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +V+ Y   KYG E VA++I  G+L AKAA+RD GR L++P   VD+L KL+P  P   +
Sbjct: 412  QKVLEYTVEKYGTESVAKVIAIGTLGAKAAIRDAGRVLEVPLPLVDKLAKLVPTKPGITL 471

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY- 546
              +A+ + +  ++   + P +  L+  ++ LEG  R+ S HA  +VI   PL + VP+Y 
Sbjct: 472  E-KALHESNELKQFSESSPEIRELVRYARALEGRARNVSMHAGAVVITSGPLEEQVPLYV 530

Query: 547  ----------------------------RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                                          V     VTQF+  WIE AGL+K D+LGL+T
Sbjct: 531  SNKIETEVRKFADEIDLDEPGPGSMKGSDGVDEKQLVTQFDKNWIETAGLLKIDYLGLET 590

Query: 579  LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            L ++ ++L  + +R  + ++L  +P +D +T+ +       GIFQ ESSGM+  +  +QP
Sbjct: 591  LAVIDETLRMIKRRYDLDIELEKVPMNDRKTFKIFQEGKMAGIFQFESSGMQSYMTRLQP 650

Query: 638  DCIEDIIALVSLYRPGPIDN--------IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
              I DIIA+ +LYRPG ++         + ++ +RK+G+E I  +HP+++ +LKET GVI
Sbjct: 651  TQIGDIIAMSALYRPGALNARIDEKRNAVDLFVDRKHGREAIDYMHPMLEEILKETYGVI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI+Q++ G+SL++AD LR+AMGKK+ E M+K K  F+ GA   G+  T+A  +
Sbjct: 711  VYQEQVMQISQVMGGFSLAKADNLRKAMGKKMPEIMEKYKADFVQGAIAQGVHDTLATRV 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            FEL+A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A +  E+ + E++K    +A
Sbjct: 771  FELMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFMTAVLNSEIGDTERMKHLTDEA 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGD------NRIYYSLAAIKGVGTTTARHIM--EASADKP 861
            + F I  +PPS+N     F V D        I   L+AIK VG   AR ++  +    + 
Sbjct: 831  KSFGISTLPPSINKSDALFSVEDSDDGRSCSIRVGLSAIKQVG-GAARAVVTSKLRRKRD 889

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F +L D  + VD + +NR+ LE L+ AGA D     R +L+ ++D   K+ Q   ++ T 
Sbjct: 890  FQNLFDLAASVDLRVMNRKALECLILAGAFDEIDQHRARLIANVDKAIKFGQMQNRSVTL 949

Query: 922  KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                 F  E+G   ++              + +  +E++++GFY S HPL  Y+   +  
Sbjct: 950  GQCGFFTAEEGALLEEEHYPDMDQAEPMAEAEKLLHEKKLVGFYLSHHPLSPYRRDWQAF 1009

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   +   I     ++  ++VS +  + RKG ++ + T  +   + +   F
Sbjct: 1010 TTLQLN-AKEIIAAKQYKVIGVIVSVKPYQDRKGKQMLFGTIEDFTGKADFTVF 1062


>gi|229587140|ref|YP_002845641.1| DNA polymerase III subunit alpha [Rickettsia africae ESF-5]
 gi|228022190|gb|ACP53898.1| DNA polymerase III alpha chain [Rickettsia africae ESF-5]
          Length = 1181

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1081 (38%), Positives = 623/1081 (57%), Gaps = 79/1081 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++  ++++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I            K        I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNI------------KYDIDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L E   EGLI L   + G + +     +   A       +++ GDR Y  + R
Sbjct: 111  DHIDFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEAKAMLFARKLQEILGDRFYFEIMR 169

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +++ E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y ++  EM+ +FSDLP A++NTV +  RC F    + P+LP F  K+       E
Sbjct: 230  VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATKDI-----SE 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
             + ++  A  GL  RLA    ++    +       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIKKDAKEGLLARLATKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PVSL QA+ +      A   +           +  +++ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ V  ++MK+ E AGL+KFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYSEIAGLVKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHELLQPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAA+Y 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VISYQTA++K +YP  FL A + LE++N +KI  F Q+A+   I+I+ P++N     F V
Sbjct: 765  VISYQTAYLKANYPAAFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824

Query: 831  G------------------------------------DNRIYYSLAAIKGVGTTTARHIM 854
                                                    I ++L AIKGV     + + 
Sbjct: 825  KFSDTVIPHSVKPVIPRLDRGIQEISKDTVVKPRCDIAGAIIFALGAIKGVTPNFGKLVT 884

Query: 855  -EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
             E  A   F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QLL S+  +  Y+ 
Sbjct: 885  DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
               + + +   ++   +  + S  I +     + +++ F  E   +G + S HPL  Y+ 
Sbjct: 945  AYHEEQESNQFSL--IKVSSLSPTILVSSDYADKNTLAF-YEFEAMGLFISNHPLTEYQA 1001

Query: 974  ILRKMGIKGYEESV-ATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            I  ++ I    +       G N + LA ++  K  + + +G R   +  S+P   +E + 
Sbjct: 1002 IFSRLNILNTADLHNNLPDGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSI 1060

Query: 1032 F 1032
            F
Sbjct: 1061 F 1061


>gi|291513949|emb|CBK63159.1| DNA polymerase III, alpha subunit [Alistipes shahii WAL 8301]
          Length = 1269

 Score =  912 bits (2358), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1154 (31%), Positives = 575/1154 (49%), Gaps = 141/1154 (12%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ-------K 61
            P FVHL VH+ YS+L+G  S+  ++DK  AD QP IA+TD  ++F   EF         K
Sbjct: 2    PQFVHLHVHTQYSILDGQASVQRLVDKAMADGQPGIAVTDHGDMFGIKEFYNYVQKVKGK 61

Query: 62   AC---------------------------------------AAGIQPIIGCQLDIDMQDN 82
                                                         +PIIGC++ +     
Sbjct: 62   CKDKAAEAEARIAALRDGTETCADPAAEIAKCERQLEECRRKLAFKPIIGCEVYVA---R 118

Query: 83   LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
             ++ ++   P  +   ++LL    +GY  LI++VS+ +         R   + +++   E
Sbjct: 119  RRLHDKEGKPDQSGYHLILLAKNLKGYHNLIKIVSKAWTEG-FYMRPRTDRTEIEKYH-E 176

Query: 143  GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ--- 199
            GLI  +   +G + RA   N  + AE+ +   KK+FGD  Y+ LQ H+        +   
Sbjct: 177  GLICCSACLAGEVPRAITANDLEKAEESIRWHKKVFGDDYYLELQLHKATVERANHEAYP 236

Query: 200  --------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                    + +LA  H + +V TN+  F+ E++ EAHD L+ ++    +    R   +  
Sbjct: 237  MQLHVNKHLRELAAKHNVRMVCTNDVHFVDEDNAEAHDRLICLSTGKDLDDPKRMLYSKQ 296

Query: 252  HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE---- 306
             +LK  +EM +IF    PEA+  TV+I  +       HAPI+P F   E    + E    
Sbjct: 297  EWLKTTAEMAAIFGQTDPEAMSTTVDICNQIECYSIDHAPIMPNFEIPEEFGTEAEYRAR 356

Query: 307  -------------------------------------------EENELRNKAVAGLEVRL 323
                                                       E + L    + G   R 
Sbjct: 357  LTEKDLFDEFTRDENGNVVMSEEEGLKKIQKLGGYDKLYRIKFEADYLAKLTMDGAHRRY 416

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGA 382
             +         ++  +RL FEL+++  M F GYFLIV DFI+ A++  ++ VGPGRGS A
Sbjct: 417  GEQL------TEEQEERLKFELHIMKTMGFPGYFLIVQDFIRAAREELDVSVGPGRGSAA 470

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GS  AY L IT IDP+ + LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+
Sbjct: 471  GSAVAYCLGITQIDPIAYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTQKYGKEK 530

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFRE 500
            VA IIT+G++  K A++DV R  ++  S+ DRLCKL+P+  P   ++LQ AI      + 
Sbjct: 531  VAHIITYGTMATKLAIKDVARVQKLMLSESDRLCKLVPDKIPDKKLNLQNAIDYVPELKA 590

Query: 501  ARLAD-PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPV 555
            A  +D P +   +  ++ LEG  R+   HA G +I    ++  VP+     ++    + V
Sbjct: 591  AEQSDNPILRDTIRYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLV 650

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI-PFDDHETYHLLT 613
            TQ+    IE  GLIK DFLGLKTL++++ +++ +   +GVK+D+      +D  TY L  
Sbjct: 651  TQYEGSVIEDTGLIKMDFLGLKTLSIIKDAVENIRLTKGVKIDIDDFTIINDPATYRLYG 710

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
               T+G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  +  RK+G+  I  
Sbjct: 711  EGRTVGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIARKHGRSPIEY 770

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
              P+++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+K+++D  K +FI
Sbjct: 771  DIPVMEKYLKDTYGITVYQEQVMLLSRLLANFTRGESDTLRKAMGKKLKDKLDHLKPKFI 830

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
             G  KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA ++
Sbjct: 831  EGGRKNGHDPKVLEKIWGDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVLS 890

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARH 852
              + N+E++  +  + ++  I +M P +N     F       + + LAA+KGVG      
Sbjct: 891  RNLTNIEQLTLYMNECKRMGISVMGPDINESMRTFSSNAAGDVRFGLAAVKGVGAAAVES 950

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS------ 904
            I+    A+ PF  + DF  RV+   +NR+ LE+L +AGA D    ++R +          
Sbjct: 951  IIAERKANGPFKDIYDFVERVNYSLVNRKCLENLAYAGAFDSISDFARCKYFGVDLRDSS 1010

Query: 905  ----LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
                ++ + +Y Q  +  + N  +++F   +     +  L   +  +   +   E+ ++G
Sbjct: 1011 GITFIEQLMRYGQRFQTEQNNAQQSLFGGGEHVDIQRPVLPACADWSQLEKLTKEREMVG 1070

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             Y S HPLD YK I+  M      E   +  ++G  I +A MVV  Q   T+ G   G  
Sbjct: 1071 LYLSAHPLDDYKIIIDHMCKTQLSELENLDALKGQEIAVAGMVVGVQNLMTKTGKPWGKF 1130

Query: 1019 TFSEPAKEYEANFF 1032
               +    +E   F
Sbjct: 1131 KLEDYNGGHEFALF 1144


>gi|34763539|ref|ZP_00144477.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
            vincentii ATCC 49256]
 gi|27886788|gb|EAA23923.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
            vincentii ATCC 49256]
          Length = 1093

 Score =  912 bits (2356), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1035 (36%), Positives = 596/1035 (57%), Gaps = 40/1035 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSL EG  S+++ L K       ++A+TD  N+F A+EF QKA   GI+P
Sbjct: 3    NFVHLNLHTEYSLSEGVNSIDSFLVKAKELGMSSLAVTDYANMFCAVEFYQKAKKMGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L I  +D              + S+ LL     GY+ L++L S +Y  ++ ++  
Sbjct: 63   IIGLELPISNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRELK 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRLYVNLQ 187
             I    L+E  ++ LI L+   +G I +A   NSS    +  +  + ++F  +  Y+ +Q
Sbjct: 112  -INKEVLKEY-SQDLIALSSSINGEIGKAILTNSSDEKIDSIINEYIEIFSKENFYLEIQ 169

Query: 188  RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                 + +    +   LA  H+L LVATNN  ++  + YE  D+++ +     V +K+R 
Sbjct: 170  ASELSETKIINDRFYDLAKFHDLELVATNNVYYVDRDGYELQDIIICIQSGLKVKEKNRK 229

Query: 247  RV-TPDHYLKNRSEMVS-IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R  + + YLK++ EM   +     +A+EN   IA  C+  +       P +   E     
Sbjct: 230  RAISKELYLKSKDEMKRFLGEKFEKAIENANHIADLCNVEISFGNLQFPYY---EVPSEY 286

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L+      ++    +         +D   RL++EL+VI +M +SGYF++V DFI
Sbjct: 287  SGMDEYLKTICHTNIKKLYKEDL------TKDILDRLEYELSVIIKMGYSGYFIVVWDFI 340

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD DID C+
Sbjct: 341  SYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICR 400

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+L KL+ +   
Sbjct: 401  ERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLVSHSQT 460

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               +L+   ++    +    D  + ++++++ ++E   RH STHAAGI+I    L + VP
Sbjct: 461  LEKTLK---ENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGILITKEDLDRTVP 517

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL  IP 
Sbjct: 518  IYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDLYKIPL 577

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPGP+ + +V  +
Sbjct: 578  DDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQSGMVDDF 637

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRAMGKK 
Sbjct: 638  INRKNGKEKIEYPHKDLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRAMGKKN 697

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               M + +E+FI  A KNG +   +  IFEL+ KFA YGFNKSH+ AYA+ISY TA+ K 
Sbjct: 698  FAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWTAYFKV 757

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP  + AA MT E+     I  +  DA++  I++  P++N+P   F+V +  I YSLAA
Sbjct: 758  HYPAFYYAAVMTSEISETGDIAYYFNDAKEHGIRVYSPNINSPSSYFEVKNEGITYSLAA 817

Query: 842  IKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GALD    +R +
Sbjct: 818  IKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIKGNRKE 877

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
               S+D +  Y+    K    +  N+F     T  D+  L      +   +   E+  LG
Sbjct: 878  KFLSIDKVLDYSSKASKTDEIQQMNLFGEATKTI-DRFNLAISEDFSLDEKLNKEKEFLG 936

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S HPLD +K I+    I    E +       ++    + + ++  T+K  ++     
Sbjct: 937  FYLSSHPLDRHKDIILAFRINKLSE-IDLEGSQIVKTFGTITNLKKIITKKEEQMAMFNL 995

Query: 1021 S--EPAKEYEANFFP 1033
               +         FP
Sbjct: 996  ICYDRT--ISCIAFP 1008


>gi|254442121|ref|ZP_05055597.1| DNA polymerase III, alpha subunit subfamily, putative
            [Verrucomicrobiae bacterium DG1235]
 gi|198256429|gb|EDY80737.1| DNA polymerase III, alpha subunit subfamily, putative
            [Verrucomicrobiae bacterium DG1235]
          Length = 1259

 Score =  911 bits (2355), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1102 (32%), Positives = 566/1102 (51%), Gaps = 96/1102 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YSLL+G         +      PA+A+TD  NLF A++F +     GI+P
Sbjct: 8    PFVHLHNHTHYSLLDGCAKPLRAAQRCLELGMPALAMTDHGNLFGAIDFYRSCKKVGIKP 67

Query: 70   IIGCQLDI---------DMQDNLKMTNQGKTPFPTVP-----------SIVLLVSTAEGY 109
            +IGC+L             ++  +  + G  P   VP              ++    EGY
Sbjct: 68   LIGCELYYVNDHKQSERPRRERKRTDDIGDIPEHYVPPKEDFPKYQIHHKGVIAKNFEGY 127

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            Q L +LVS  ++ +      R  +  L +  ++GLI L+G  +G   +   +   + A K
Sbjct: 128  QNLCKLVSDAHI-NGVYYKPRADIETLAKY-SKGLIGLSGCINGVAAQYLIYGDEENARK 185

Query: 170  RLLTFKKLF-GDRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               TF  +F  +  ++ +Q H    + R    +++LA   +L ++  N+S ++ +ED   
Sbjct: 186  ATATFVDIFGKENYFIEIQDHGMPVQRRIIPGLLKLAKEFDLKVICANDSHYVYKEDANP 245

Query: 228  HDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            HD L+ +    ++  ++R +  + + YLK+R EM  IF ++PE+L+NTV +A      + 
Sbjct: 246  HDALLCIQTGKIIEDENRMKYPSQEFYLKSRQEMYEIFKEVPESLDNTVHVAEMVDLEIP 305

Query: 287  VHAPILPRFIEKE------------------------------CDDIQKEEENE------ 310
                  P F                                   D + K    E      
Sbjct: 306  FDEDHYPVFECPPELGYKSDDDAFDRILDIYELEKTKVNKQNGDDTVCKLTAEERANHKK 365

Query: 311  ----LRNKAVAGLEVRLAQGAIAKGYH----------AQDYRQRLDFELNVIARMKFSGY 356
                L +    GL+ R       +  +          A+    ++DF+L +I    F  Y
Sbjct: 366  NGFVLLDLCKKGLKERYGVDYDDRASYVPKEGEREDFAEFVCDQMDFQLAIITGTGFVDY 425

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV DFI +A+   IPVGPGRGSGAG + AY L ITDIDPLRF LLFER LN +R+S P
Sbjct: 426  FLIVWDFINFARSQGIPVGPGRGSGAGCIIAYVLKITDIDPLRFGLLFERMLNLERVSPP 485

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC  RRD V+ YV+ KYGH+ VA IITFG+  AK  +RD+ R   + +++ D++ 
Sbjct: 486  DFDIDFCMRRRDVVVNYVREKYGHDSVANIITFGTFGAKMIVRDLARVNNLQFAEADKIA 545

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            K+IP++    +   ++   S  R     +P   +++E  + +EG+ R+   HA GI+IGD
Sbjct: 546  KMIPDELNISLD-DSVEKSSDLRNEIAVNPVAKKIVEHGKVIEGMVRNTGKHACGIIIGD 604

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--QRGV 594
            +P+  LVP+   ++     TQ+     E  GL+K DFLGLKTLT++  + D +   +   
Sbjct: 605  QPIHNLVPV--TLQEGDLTTQYPKGPSEDLGLLKMDFLGLKTLTVISDAQDNIQATRNLP 662

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D+  +  +D +TY LL    T+G+FQLES GM+   + +     E+IIAL++LYRPGP
Sbjct: 663  DFDIEKVTLEDPKTYDLLNAGNTVGVFQLESGGMQNLCKQIGLSVFEEIIALIALYRPGP 722

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +  I  +   K   +KI   HPL++ ++ ET GV++YQEQVM+ A++++GY+L  AD+LR
Sbjct: 723  MQFIPQFIEGKRDPKKIQIPHPLLEELVSETYGVLVYQEQVMESARIIAGYTLGGADMLR 782

Query: 715  RAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RAMGKKI   M+ QK+ F+ GA   +GI +  A+NIF +L KFA YGFNKSH+AAYA++S
Sbjct: 783  RAMGKKIASVMEAQKQIFVDGAKATHGIKEKEALNIFAILEKFAQYGFNKSHSAAYAMLS 842

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD- 832
            Y+TA++K +YPVEF+AA ++ E+ N +K+  F  +A    I+++ P +N     F     
Sbjct: 843  YRTAYLKANYPVEFMAALLSAELGNADKVSHFIDEANSMGIRVLSPDINKSKEMFTPVID 902

Query: 833  ----------NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881
                        I + + A+KGVG + A+ I+    A+ P++ +++   RVD+K +N+RV
Sbjct: 903  SEEDIADGKLGSIVFGMGAVKGVGDSAAKTIIAERDANGPYEGMDELLERVDTKSVNKRV 962

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKIT 939
            LE+L+  GA D  G  R  L   L+     A   ++++    E+ F    E+    D   
Sbjct: 963  LENLIKTGAFDFTGEPRGSLFHRLEGAMNQAAEAQRDKERGQESFFDMIVEEPKEKDAPQ 1022

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
             +       +     E+ +LGFY SGHPLD YK I   +      +          +   
Sbjct: 1023 WDLSKQFTKTEMLRYEKELLGFYVSGHPLDEYKGIAEALTNFDLSKVDQLGDKVEFQACG 1082

Query: 1000 MVVSKQQKKTRK-GSRIGWVTF 1020
            +     +K +RK      + + 
Sbjct: 1083 VAGGVVKKLSRKDNRPWAFFSL 1104


>gi|307571155|emb|CAR84334.1| dnaE [Listeria monocytogenes L99]
          Length = 1095

 Score =  911 bits (2355), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1018 (34%), Positives = 567/1018 (55%), Gaps = 43/1018 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PIIG         
Sbjct: 1    MLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPIIGMT------- 53

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
               +T QG         ++L+  +  GY  L+++ S +   ++G     +  SWL+   +
Sbjct: 54   ---VTIQGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PELPQSWLRAYSS 107

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRHRGYDRYRESQV 200
              LI ++ G+ G I+R     +   A +       +F  + +Y++ Q+    +    +++
Sbjct: 108  N-LIAISPGAKGEIERLLMEENRDGALEAYANLVDIFGKESVYLSAQK---ENPRLFAKI 163

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
               +    +P+VAT N  +L  +D +A +VL A+  +  V     P   P+ Y  ++ EM
Sbjct: 164  ETFSAEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAGPN-YFTSQEEM 222

Query: 261  VSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
               +      +A   T E+A RC   + +   +LPRF   E     +   + LR  A  G
Sbjct: 223  ERDWQTDFEKQACFETGELADRCHVEIALDQHLLPRFPLTEG----QNAPDVLRQTAYDG 278

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            L+ R   GA        +Y++RL++EL VI  M F+ YFLIV D I+++++  +  GPGR
Sbjct: 279  LKERDLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSREAGVLTGPGR 330

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRDEVI YV +KY
Sbjct: 331  GSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRDEVISYVVSKY 390

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     +  +A+ +  R 
Sbjct: 391  GEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITLQ-KALQESPRL 449

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
                 +    + + E++ +LEGL RH STHAAGIVI D+PL + V +      D  +TQF
Sbjct: 450  ENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLGS-GDARLTQF 508

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617
             M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D +T  L  T  T
Sbjct: 509  AMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNRETPLTLADISLEDKKTLKLFQTGDT 568

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
             G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK+GKEKI   HP 
Sbjct: 569  TGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHGKEKIQYPHPD 628

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA 
Sbjct: 629  LAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAK 688

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
              G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    
Sbjct: 689  SKGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFG 748

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEA 856
            N +KI ++  +A+ + I ++ PS+N     F+V +     YS   I+ V T     I+  
Sbjct: 749  NDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVPTKFILEIINE 808

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
                PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + 
Sbjct: 809  RKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLG 868

Query: 917  KNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            ++  +K  N+FA +       K    K +  +   + E E+   G Y S HP+  Y+  L
Sbjct: 869  ED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKL 926

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + + I       +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 927  QNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 981


>gi|194336619|ref|YP_002018413.1| DNA polymerase III, alpha subunit [Pelodictyon phaeoclathratiforme
            BU-1]
 gi|194309096|gb|ACF43796.1| DNA polymerase III, alpha subunit [Pelodictyon phaeoclathratiforme
            BU-1]
          Length = 1189

 Score =  911 bits (2355), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1072 (34%), Positives = 580/1072 (54%), Gaps = 62/1072 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F+HL  H+ YS+    +  + I          ++A+TD   +F+  E   +A +AGI+ 
Sbjct: 2    DFIHLHAHTHYSMQSSPIFPDEIFSAAVKFGMKSVAVTDYCAMFNMPELFSEAKSAGIKL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +     L+      +  P  PS+VLLV    GY+ L  L+SR           
Sbjct: 62   IIGSELLL-----LETDAHQHSRIPVSPSLVLLVQNDAGYRNLCILLSRAAREGFVNGMP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I    L+    EGLI L+  S+G I RA    ++  AE     +K++FGDR Y+ LQRH
Sbjct: 117  HIESRLLESCH-EGLIALSAYSAGRIGRALLAGATDEAETFAAYYKQIFGDRFYLELQRH 175

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +D     Q + LA    + LVATNN  +L  +D + +  ++A      +S ++   +
Sbjct: 176  NTPFDDKLNEQTIALAEKLGIELVATNNVHYLERKDADCYRAMVANRTKEKLSNQNLQAL 235

Query: 249  TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               DHYLK+  EM ++FSD    L NT  IA +CS+      PILP F   E     + E
Sbjct: 236  AGSDHYLKSSGEMSALFSDAHRELSNTALIAGKCSYSFSDKEPILPHFPLPEG---FESE 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR+  + G + + A  A A G  A+D R R++ EL VI +M FS YFLIV+D I  +
Sbjct: 293  FAYLRHLTLEGAKEKYA-DADADGISAEDVRARIELELGVIEKMGFSSYFLIVSDLIAAS 351

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++    VGPGRGS AGS+ AY   IT IDPL++ LLFERFLNP+R SMPD DIDF    +
Sbjct: 352  RRLGYSVGPGRGSAAGSIVAYLTGITRIDPLKYKLLFERFLNPERSSMPDIDIDFTPVGK 411

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +V+ Y   KYG E VA++I  G+  AKAA+RD GR L++P   VD+L KL+P  P   +
Sbjct: 412  QKVLEYTVEKYGTESVAKVIAIGTFAAKAAIRDAGRVLEVPLPLVDKLAKLVPVKPGITL 471

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY- 546
              +A+++    ++   + P +  L+  ++ LEG  R+ S HA  +VI D  L + VP+Y 
Sbjct: 472  E-KALSEAKEMQQFAESTPELRELIRYARALEGRARNVSMHAGAVVITDGRLEEQVPLYV 530

Query: 547  ----------------------------RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                                                VTQF+  WIE +GL+K D+LGL+T
Sbjct: 531  SNKIETEVRKFADEIDLDEPDHVRGKASDGSEEKQVVTQFDKNWIETSGLLKIDYLGLET 590

Query: 579  LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            L ++ ++L  + +R  + ++L  +P +D +T+ +       GIFQ ESSGM+  +  +QP
Sbjct: 591  LAVIDETLKMIKRRHNLDIELEKVPMNDRKTFRIFQEGKMAGIFQFESSGMQSYMTRLQP 650

Query: 638  DCIEDIIALVSLYRPGPI--------DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
              I DIIA+ +LYRPG +        + + ++ +RK+G+E I  +HP+++ +LKET GVI
Sbjct: 651  TQIGDIIAMSALYRPGALNARIDEKRNAVDLFVDRKHGREAIDYMHPMLETILKETYGVI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI+Q++ G+SL++AD LR+AMGKK  E M+K K  F+ GA K G+  T+A  +
Sbjct: 711  VYQEQVMQISQVMGGFSLAKADNLRKAMGKKKPEIMEKYKADFVQGAIKQGVHDTLATRV 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            FEL+A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A +  E+ ++E++K    +A
Sbjct: 771  FELMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFVTAVLNSEIGDIERMKHLTDEA 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIM--EASADKPFD 863
            + F I  +PPS+N     F V D      I   L+AIK VG   AR ++       + F 
Sbjct: 831  KSFGISTLPPSINKSDALFAVEDAGGRSFIRVGLSAIKQVG-AAARAVVTSRLRRKRDFV 889

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            +L D  + VD + +NR+ LE L+ +GA D     R +LL ++D   K+ Q   ++ T   
Sbjct: 890  NLFDLAASVDLRVMNRKALECLILSGAFDEIDQHRARLLANVDKAFKFGQMQNRSVTLGQ 949

Query: 924  ENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
               F  E+G   ++          +   + +  +E++++GFY S HPL  Y+   +    
Sbjct: 950  CGFFTAEEGAELEEAHYPDMDAAEMMPEAEKLLHEKKLVGFYLSHHPLSPYRRDWQAFAT 1009

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++   +     ++  ++VS +  + RKG ++ +    +   + +   F
Sbjct: 1010 LQL-DAKEVVAAKQYKVLGLIVSVKPYQDRKGKQMLFGIIEDFTGKADFTVF 1060


>gi|157826231|ref|YP_001493951.1| DNA polymerase III subunit alpha [Rickettsia akari str. Hartford]
 gi|157800189|gb|ABV75443.1| DNA polymerase III subunit alpha [Rickettsia akari str. Hartford]
          Length = 1185

 Score =  911 bits (2354), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1085 (38%), Positives = 620/1085 (57%), Gaps = 83/1085 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL+L  I++  ++++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTLEKIVELASSNKMPAICLADRGNLFGSLEFALYAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I            K        I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNI------------KYDVDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L +   EGLI L   + G + +       + A     T +++ GDR Y  + R
Sbjct: 111  DHITFEDLIKY-QEGLIALCCYTDGIVGKCLLAREQEQAMLFARTLQEILGDRFYFEIMR 169

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +++ E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HDLPEEQFIEDSYIKIASELSIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYPDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y ++  EM  IFSDLP A++NTV +  RC F    + P+LP F  K+       E
Sbjct: 230  VSENCYFRSPHEMREIFSDLPNAIQNTVNLRERCYFAAHANPPMLPNFATKDI-----SE 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
             + +R  A  GL  RLA    ++    +       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIRKDAKEGLLARLATKFKSEHISLENQEELKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKKGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYGH RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGHNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PV+L QA+ +      A   +           +  +L+ S  LEGL+RH STHAA
Sbjct: 465  FSAVNPVTLEQAMREVPELANAAKGNGLYNLEGEAELIKLVLDTSLILEGLHRHVSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIACTDLVDIVPVYKDANSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLKQPDYLHELLKPILEETYGVVIYQEQVQRIAQILAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++ +E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAAAY 
Sbjct: 705  DLLRRAMGKKIKKEMEEHEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAAAYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VISYQTA++K +Y  EFL A + LE++N +KI  F Q+A+   I+I+ P++N+    F  
Sbjct: 765  VISYQTAYLKANYSAEFLVACLNLELNNHDKINLFLQEAKDSGIKIIAPNINSSEGYFTT 824

Query: 831  GDN----------------------------------------RIYYSLAAIKGVGTTTA 850
                                                        I ++L AIKGV  +  
Sbjct: 825  CHFGSALCHPRVGVDPEKTSEMKMDSRFCENNIESTGYDKEERAIIFALGAIKGVTPSFG 884

Query: 851  RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + +  E  A   F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QL  S+  + 
Sbjct: 885  KLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLFLSISKLL 944

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             Y+    + + +   ++   +  + S  I +     + +++ F  E   +G + S HPL 
Sbjct: 945  AYSTSYHEEQESNQFSL--IKVSSLSPTILVSSDYADKNTLAF-YEFESMGLFISNHPLT 1001

Query: 970  VYKPILRKMGIKGYEES-VATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             Y+ I  ++ I            G N + LA ++  K  + + +G R   +  S+P   +
Sbjct: 1002 EYQEIFSRLNILNTAYLYNNLPEGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIF 1060

Query: 1028 EANFF 1032
            E + F
Sbjct: 1061 ELSVF 1065


>gi|51473946|ref|YP_067703.1| DNA polymerase III subunit alpha [Rickettsia typhi str. Wilmington]
 gi|81826280|sp|Q68VX1|DPO3A_RICTY RecName: Full=DNA polymerase III subunit alpha
 gi|51460258|gb|AAU04221.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
            Wilmington]
          Length = 1180

 Score =  910 bits (2353), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1079 (38%), Positives = 616/1079 (57%), Gaps = 80/1079 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+  SSYS LE AL++  +++     + PA+ ++D  NLF +LEF+  A    +QPI
Sbjct: 5    FIHLRTQSSYSFLESALTIEKVVELALLHKMPALCLSDRGNLFGSLEFALYAVKKKLQPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L+I    N+               I+L+     GY+ L++L S  +  +  K    
Sbjct: 65   HGVILNIQYDINV------------FAQILLIAKDETGYKNLLKLSSLTFTKNDRKICDH 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L +   EGLI L   + G + +       + A       + + GDR Y  + RH 
Sbjct: 113  INFEDLIKY-QEGLIALCCYTDGIVGKCLLARKQEHAIMFARRLQAILGDRFYFEIMRHD 171

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +++ E+  +Q+A    +P+VATN  LF  +  + AHDVL+ ++        DR  V+
Sbjct: 172  LPEEQFIENSYIQIASELSIPIVATNKVLFSEKSMHYAHDVLLCISEGVTKEYPDRKTVS 231

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + Y K+ +EM  +FSDLP A++NTV +  RC F    + P+LP F  ++        E 
Sbjct: 232  ENCYFKSPAEMKKLFSDLPNAIQNTVNLRERCYFAAHPNPPMLPNFSTQDI------SET 285

Query: 310  EL-RNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIVA 361
             L R  A  GL  RL     A+    +       +Y  RL++EL++I  M F+GYFLIV+
Sbjct: 286  YLIRKYAKEGLLARLVTKFKAENISREHQEKLKTEYFTRLNYELDIICNMNFAGYFLIVS 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+W+KK+ I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDID
Sbjct: 346  DFIKWSKKHGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDID 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ+RR+EVI YV +KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P 
Sbjct: 406  FCQERREEVINYVCSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKCADYLTELVPF 465

Query: 482  DPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAAG 531
               +PVSL QAI +      A               +  +L+ S  LEGL+RH+STHAAG
Sbjct: 466  SAVNPVSLEQAIREVPELANAAKGKGLYNLEGDAELIKLVLDTSLILEGLHRHSSTHAAG 525

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            IVI    L  +VP+Y+D  SD+ +  ++MK+ E AGLIKFDFLGL+TLT++      L +
Sbjct: 526  IVIAGTDLVDIVPVYKDANSDMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITNCKKLLKE 585

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            +G+++D   + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LYR
Sbjct: 586  QGIEIDFDDMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALYR 645

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  AD
Sbjct: 646  PGPMENIPTYIACKHKLQQPDYLHKLLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAAD 705

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAAAY V
Sbjct: 706  LLRRAMGKKIKKEMEEQEEIFVKGAIANNISQSQAKSIFATVAKFAGYGFNKAHAAAYGV 765

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            ISYQTA++K +YP EFL A + LE++N +KI  F Q+A+   I+I+ P++N     F V 
Sbjct: 766  ISYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSVK 825

Query: 831  ----------------------------------GDNRIYYSLAAIKGVGTTTARHIM-E 855
                                               ++ I ++L AIKGV     + +  E
Sbjct: 826  SSDTVITHNTKPLIPRLNNEIDIKDTAVKSLYYKDESTIIFALGAIKGVTPNFGKLVTDE 885

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
              A   F S+ DF  R+  K +N ++LE+L+ AG  D    +R+QL  S+  +  Y+   
Sbjct: 886  RKARGAFKSITDFIERLPPKSINSKLLENLIKAGCFDELHDNRLQLFLSVPKLIAYSTSY 945

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
             + + +   ++   +  + S  I +     + +++ F  E   +G + S HPL  Y+ I 
Sbjct: 946  HQEQESNQFSL--IKVSSLSPTILVSSNYADKNTLAF-YEFESMGLFISNHPLTEYQEIF 1002

Query: 976  RKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++ I    +    +    N + LA ++  K  + + +G R   +  S+P   +E   F
Sbjct: 1003 SRLNILNTRDLYNKLPNGTNQVTLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELTIF 1060


>gi|56421279|ref|YP_148597.1| DNA-directed DNA polymerase III subunit alpha [Geobacillus
            kaustophilus HTA426]
 gi|56381121|dbj|BAD77029.1| DNA-directed DNA polymerase III alpha subunit [Geobacillus
            kaustophilus HTA426]
          Length = 1091

 Score =  910 bits (2351), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1025 (37%), Positives = 581/1025 (56%), Gaps = 51/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL V S YSL + A ++  +  +       A+A+TD N L+ A+ F ++    GI+PI
Sbjct: 3    FVHLHVLSGYSLFQSAAAVEALAARAKQLGYQALALTDRNVLYGAIPFYRECKQNGIRPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG   D+ +         G+  FP    +VLL +  EGY+ L+E+ + M    Q  ++  
Sbjct: 63   IGVTADVALS--------GEEAFP----LVLLAANEEGYRHLLEISTMM----QMGETKH 106

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +  + L  + + G+I +T GS G ++        + A++ L  + +LF  RLYV +QR  
Sbjct: 107  MEEAALVRL-SGGIIAITPGSEGRVESLVAAGEWERAKEALGRYHQLFPGRLYVAVQRGE 165

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                  E+ ++QL     +P+VATN+  ++   D  A   L A+    +++  +      
Sbjct: 166  QTRAPYEAGLLQLVEETGVPIVATNDVRYVERSDAVAWRCLQAIGRGALLADIEDDN--- 222

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              YL    EM   F+DLPEALEN++ IA +C   ++     LP +   + +      ++ 
Sbjct: 223  GRYLAGPEEMARRFADLPEALENSLAIADQCELQIEFGGWRLPAYPVPDGE----TADSY 278

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  +  GL  R+           + Y +RL  EL+VI  + FS YFLIVAD + +A++ 
Sbjct: 279  LRRLSEQGLARRVPSA-------DERYWRRLSHELDVIQSLHFSDYFLIVADVLAYARRR 331

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I  GPGRGS AGS+ AYAL+ITD+DP+++ LLFERFLNP+R S+PD D+DF  DRR+EV
Sbjct: 332  GILTGPGRGSAAGSLVAYALSITDVDPIKYGLLFERFLNPERASVPDIDLDFPDDRREEV 391

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV +KYG +RVAQIITFG+  AKAALR+  +AL +P  + +++  L+P+  +  +  Q
Sbjct: 392  IRYVADKYGRDRVAQIITFGTFGAKAALRETAKALGVPGREAEQVAALLPSKQSVTLR-Q 450

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
              A+ + FR A  A P     L ++QKLEGL RH S HAAG++I   PL + VP+     
Sbjct: 451  WHAESAAFRRAVAAVPQGREWLAVAQKLEGLPRHTSIHAAGVIISPEPLVRFVPLQ-PSH 509

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
             + P+TQ+ M  +E  GL+K DFLGL+TLTL+++ +  +  Q G   D+  +P +D +TY
Sbjct: 510  GEWPLTQYAMGALEALGLLKIDFLGLRTLTLIEQIVRLIERQTGKPFDIRTLPLNDEKTY 569

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T GIFQLESSGM++ L  ++P  +ED++A+ +LYRPGP+  I VY  RK G+E
Sbjct: 570  ALLGAGDTNGIFQLESSGMKRVLAELRPSQLEDVVAVNALYRPGPMQMIPVYIRRKRGEE 629

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +   HP ++ +L  T GV+IYQEQ+MQIA  L+G+SL +ADVLRRA+ KK K  + +Q+
Sbjct: 630  PVSYAHPDLETILAPTYGVLIYQEQIMQIAARLAGFSLGQADVLRRAVAKKEKALLAEQR 689

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F++G   NG  K +A  ++  + +FADYGFN+SHA +YA++SY  A+MK HYP+ F A
Sbjct: 690  QAFVAGCVANGYPKAVAEELYRHIVRFADYGFNRSHAVSYALLSYAMAYMKAHYPLCFYA 749

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +T    + EK   +  +A +  I ++ PSVN       V  + I   LA +K VG + 
Sbjct: 750  VMLTNASGDREKAAVYYWEAARKGINVLLPSVNKSGFRSSVEGSAIRLGLAMVKQVG-SA 808

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A+ I+E   A+ PF    DF +R+  K L R  LE+L+  GA D FG  R  LL S+D  
Sbjct: 809  AKLIVEERKANGPFADFFDFAARLLPKGLGRPALEALISVGAFDEFGADRASLLASIDIA 868

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             ++AQWV+           A + G  S K           S R   E   LGF  + HP 
Sbjct: 869  IEHAQWVQ-----------ALQAGGLSLKPKYAAAHSWPLSERRRREAEFLGFAVTPHPA 917

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             V +P+L+  G     +    ++G +  +   VV  ++ +T++G  + + T  + + E E
Sbjct: 918  AVCRPLLQAAGAVCVAD----VQGPSTVVGGAVVRIRKTRTKQGEEMAFFTVGDESGELE 973

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 974  AVAFP 978


>gi|261418242|ref|YP_003251924.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC61]
 gi|319767798|ref|YP_004133299.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC52]
 gi|261374699|gb|ACX77442.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC61]
 gi|317112664|gb|ADU95156.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC52]
          Length = 1092

 Score =  909 bits (2350), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1025 (37%), Positives = 579/1025 (56%), Gaps = 51/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL V S YSL + A ++  +  +       A+A+TD N L+ A+ F ++    GI+PI
Sbjct: 2    FVHLHVLSGYSLFQSAAAVEALAARAKQLGYQALALTDRNVLYGAIPFYRECKQNGIRPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG   D+ +         G+  FP    +VLL +  EGY+ L+E+ + M    Q  ++  
Sbjct: 62   IGVTADVALS--------GEEAFP----LVLLAANEEGYRHLLEISTMM----QMGETKH 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +  + L  + + G+I +T GS G ++        + A++ L  + +LF  RLYV +QR  
Sbjct: 106  MEEAALVRL-SGGIIAITPGSEGRVESLVAAGEWERAKEALGRYHQLFPGRLYVAVQRGE 164

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                  E+ ++QLA    +P+VATN+  ++   D  A   L A+    +++  +      
Sbjct: 165  QTRAPYEAGLLQLAEETGVPIVATNDVRYVERSDAVAWRCLQAIGRGALLADIEDDN--- 221

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              YL    EM   F+DLPEALEN++ IA +C   ++     LP +   + +      ++ 
Sbjct: 222  GRYLAGPEEMARRFADLPEALENSLAIADQCELQIEFGGWRLPAYPVPDGE----TADSY 277

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  +  GL  R+           + Y +RL  EL+VI  + FS YFLIVAD + +A++ 
Sbjct: 278  LRRLSEQGLARRVPSA-------DERYWRRLSHELDVIQSLHFSDYFLIVADVLAYARRR 330

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I  GPGRGS AGS+ AYAL+ITD+DP+++ LLFERFLNP+R S+PD D+DF   RR+EV
Sbjct: 331  GILTGPGRGSAAGSLVAYALSITDVDPIKYGLLFERFLNPERASVPDIDLDFPDGRREEV 390

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV +KYG +RVAQIITFG+  AKAALR+  +AL +P  + +++  L+P+  +  +  Q
Sbjct: 391  IRYVADKYGRDRVAQIITFGTFGAKAALRETAKALGVPGREAEQVAALLPSKQSVTLR-Q 449

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
              A+ + FR A  A P     L ++QKLEGL RH S HAAG++I   PL + VP+     
Sbjct: 450  WHAESAAFRRAVAAVPQGREWLAVAQKLEGLPRHTSIHAAGVIISPEPLVRFVPLQ-PSH 508

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
             + P+TQ+ M  +E  GL+K DFLGL+TLTL+++ +  +  Q G   D+  +P +D +TY
Sbjct: 509  GEWPLTQYAMGALEALGLLKIDFLGLRTLTLIEQIVRLIERQTGKPFDIRTLPLNDEKTY 568

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T GIFQLESSGM++ L  ++P  +ED++A+ +LYRPGP+  I VY  RK G+E
Sbjct: 569  ALLGAGDTNGIFQLESSGMKRVLAELRPSQLEDVVAVNALYRPGPMQMIPVYIRRKRGEE 628

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +   HP ++ +L  T GV+IYQEQ+MQIA  L+G+SL +ADVLRRA+ KK K  + KQ 
Sbjct: 629  PVSYAHPDLETILAPTYGVLIYQEQIMQIAARLAGFSLGQADVLRRAVAKKEKALLAKQH 688

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F++G   NG  K +A  ++  + +FADYGFN+SHA +YA++SY  A+MK HYP+ F A
Sbjct: 689  QAFVAGCVANGYPKAVAEELYRHIVRFADYGFNRSHAVSYALLSYAMAYMKAHYPLCFYA 748

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +T    + EK   +  +A +  I ++ PSVN       V  + I   LA +K VG + 
Sbjct: 749  VMLTNASGDREKAAVYYWEAARKGINVLLPSVNKSGFRSFVEGSAIRLGLAMVKQVG-SA 807

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A+ I+E   A+ PF    DF  R+  K L R  LE+L+  GA D FG  R  LL S+D  
Sbjct: 808  AKLIVEERKANGPFADFFDFAVRLLPKGLGRPALEALISVGAFDEFGADRASLLASIDIA 867

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             ++AQWV+           A E G  S K           S R   E   LGF  + HP 
Sbjct: 868  IEHAQWVQ-----------ALEAGGLSLKPKYAAAHSWPLSERRRREAEFLGFAVTPHPA 916

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             V +P+L+  G     +    ++G +  +   VV  ++ +T++G  + + T  + + E E
Sbjct: 917  AVCRPLLQAAGAVCVAD----VQGPSTVVGGAVVRIRKTRTKQGEEMAFFTVGDESGELE 972

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 973  AVAFP 977


>gi|160947425|ref|ZP_02094592.1| hypothetical protein PEPMIC_01359 [Parvimonas micra ATCC 33270]
 gi|158446559|gb|EDP23554.1| hypothetical protein PEPMIC_01359 [Parvimonas micra ATCC 33270]
          Length = 1122

 Score =  909 bits (2349), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/1037 (32%), Positives = 570/1037 (54%), Gaps = 49/1037 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YSLL     +  +++K       A+AITD NN++  ++F ++     I+P
Sbjct: 4    DFVHLNVHTEYSLLNNYNPIEKLIEKAKELNFKAMAITDYNNMYGVIDFYKRCKKNSIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +   +N               +I+LL     GY+ L +LVS +Y+++   +  
Sbjct: 64   IIGCELTLSYSNN------------EFYNIILLAKNNLGYKNLCKLVSNLYVVENRNREF 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
             I    L++  ++ LI++ G     I +  +      A+  +L FK LF  + L++ L  
Sbjct: 112  -ITFDELEKY-SKNLILIVGSKRSFIRKCLYSEDILSAKNEILNFKSLFNREDLFLELNF 169

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D    ++ ++ A    +  V TN+  +L   D+    +   ++   ++S+     
Sbjct: 170  HFEENDELMMNRYLEFANEVNIETVVTNDVHYLENTDFNLFKIARCISKGVLLSELKEDN 229

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             T  +++LK+  EM+ IFS L +++ NT  IA+RC+         LP +      D    
Sbjct: 230  FTQAEYFLKSEEEMLKIFSTLEDSMYNTKMIAQRCNVEFDFSTYHLPEYKVP---DGVST 286

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +E+ L +  + G++ R             + ++R+++E +VI +M F+ YFLIV DF+ +
Sbjct: 287  KEDYLHSLIIEGMKKRYEN-------LTDEIKKRVNYEFSVINKMGFTDYFLIVWDFVNF 339

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AKKN IPVGPGRGSGA S+ AY L ITDIDP+ + L+FERFLNP+R+SMPDFDIDFC +R
Sbjct: 340  AKKNKIPVGPGRGSGANSIVAYCLEITDIDPIEYDLIFERFLNPERVSMPDFDIDFCNER 399

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI YV  KYG   V+QIITFG+++ +AA+RD+GR L    S VD++ KLIPN+    
Sbjct: 400  REEVIDYVIKKYGKNHVSQIITFGTMKPRAAVRDIGRVLGYKLSTVDKVAKLIPNNLDVT 459

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                A+ D    ++    D ++ +L+ IS+K E  +RH S HAAGIVI    L++ +P+ 
Sbjct: 460  FK-NALRDSLELKKLYDEDINIKKLINISEKFEKFHRHISIHAAGIVITKEELTEYIPLA 518

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            +    +  VTQFNM  +E+ GL+K DFLGL+TLT++  ++  + +     +D+  I  +D
Sbjct: 519  K--SGENIVTQFNMVELEELGLLKMDFLGLRTLTVIDDTIKLVKKNYNRDIDIEKISLND 576

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                +L  T  T+GIFQ ES+GMR  L+ ++ D  ++++A  SL+RPGP++ I  Y   K
Sbjct: 577  KNVLNLFKTADTIGIFQFESTGMRLFLKDLKADNFDELVAANSLFRPGPMNQIPNYIKNK 636

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
                 I  +   ++  LK T G+I+YQEQVMQIA+ L+GY+  +AD LR+A+GKK  + M
Sbjct: 637  RNPSGIRYLDKRLEKYLKSTYGIIVYQEQVMQIARELAGYTWGQADNLRKAIGKKHMDIM 696

Query: 726  DKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            +  ++ FI             G  +NG+ + +A NIF+L+ +F +Y FNKSH+A Y++ +
Sbjct: 697  EYNRKIFIYGLDNLDGSIKIKGCIRNGVDEKLAQNIFDLIVEFGNYAFNKSHSACYSLNA 756

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y+TA++K +YP+E++   +   ++   +   + Q+ ++  I+I+ PSVN         + 
Sbjct: 757  YRTAYLKYYYPLEYMVCLLNSVINYERQFFLYFQEIKRMGIKILLPSVNFSFYKISTENK 816

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-DSKKLNRRVLESLVFAGALD 892
             +    + IKG     A+ I+EA     F + ++F  R+ DSK +N   +E+L+ +GA D
Sbjct: 817  CMRVGFSQIKGFNRLLAKDIIEARKAGKFKNFKEFLERLKDSKNMNLISIENLIKSGAFD 876

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                +R+++L S + +        KN  +   ++ + +       +  + FS +++    
Sbjct: 877  EIEKNRIEILNSCETLFTQIVSKSKNELSGQLSLISSD-FMQEKFVEYKNFSKDDT---L 932

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            E E+ VLGFY S HPLD YK  ++        +     +G   ++   V S + +K++K 
Sbjct: 933  EFEKDVLGFYISAHPLDSYKEYIKSKNSMKLIDLKVLDKG-IYKVIVYVNSVKTRKSKKN 991

Query: 1013 SRIGWVTFSEPAKEYEA 1029
              +  +   + +   E 
Sbjct: 992  KTLKIINVEDFSSSIEL 1008


>gi|194306037|dbj|BAG55471.1| putative DNA polymerase III, alpha subunit [uncultured bacterium]
          Length = 1317

 Score =  909 bits (2349), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/1106 (32%), Positives = 577/1106 (52%), Gaps = 91/1106 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    +FVHL VHS YSLL+G   +N+++++     QPAIA+TD   ++  + F +   +
Sbjct: 1    MSDQGTFVHLHVHSEYSLLDGLSRINDLVERAVELGQPAIALTDHGAMYGTMPFYRACKS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG +  + M+    M ++          +++L +   GY  L+E+ SR  L D 
Sbjct: 61   GGVKPIIGIETYLAMRS---MQDKDAQRDKERFHMLMLAANQTGYMNLLEVASRAQL-DG 116

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
                 RI  +++    +EG+I  TG  +  I RA    +  +A+K +  +  +F  DRL+
Sbjct: 117  YYYKPRIDRNFMA-AHSEGIIATTGCMAAEIPRAIGAGNMALADKLMGEYVDIFGTDRLF 175

Query: 184  VNLQRHRGYD-RYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            V LQ H   +      +++++A    L    +ATN+  +    D   H+VL+ +   + V
Sbjct: 176  VELQEHSIPELTTINQKLIEMAPRFGLQNNFLATNDVHYTRAADANPHEVLLCIQTGSTV 235

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSD--LPE-----ALENTVEIARRCSFILQVHAPILP 293
            +          +YLK+  EM ++F     PE     +L N++ I   C   L      LP
Sbjct: 236  NAPKLTFSDKGYYLKSYDEMFNLFRQNGYPEDIVLNSLRNSLAIVEMCDVNLDSKGYHLP 295

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             F   E  D        LR+    GL  R  +    +  + +D R RL+ ELN+I RM F
Sbjct: 296  EFDVPEGYDAH----GYLRHLCEQGLIWRYGE---ERARNDEDLRARLEHELNIITRMGF 348

Query: 354  SGYFLIVADFIQWA----------------------KKNNIPVGPGRGSGAGSVTAYALT 391
              YFLIV D  +WA                      K+++I     RGSGAGSV AY L 
Sbjct: 349  DTYFLIVWDLCEWAVRSDAWWETHGDPYPYESYTDWKEHDIW-WNVRGSGAGSVVAYTLG 407

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDPL   L+FERFLNP R+SMPD D+D+  D R +++ Y + +YG E+VAQIITFG+
Sbjct: 408  ITSIDPLVNGLIFERFLNPGRVSMPDIDLDYPDDVRGQMVAYTKRRYGEEKVAQIITFGT 467

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD------DSRFREARLAD 505
            + A+AA+RDVGRAL MP   VD + +L+P  P  PV ++ + D       +   +    +
Sbjct: 468  MGARAAIRDVGRALDMPLPDVDGVARLVPAIPGKPVKIKNVLDPDHEFYSAELTDRYKRE 527

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL------PVTQFN 559
             +V  LL+ +  LEG+ RHAS+HAAG+++ DRPL + VP+ R    D        VTQ+ 
Sbjct: 528  SAVKTLLDTATNLEGVARHASSHAAGVIVSDRPLQEYVPLNRPTSGDEGLGGVDRVTQWP 587

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD------DHET---- 608
            M+ +E  GL+K DFLGL TLT+++++   + +R      +  IP+D      D E     
Sbjct: 588  MEIVESIGLLKVDFLGLSTLTVMRRAARLIEERYGTVYTMDNIPYDEGHIGPDPERDPEL 647

Query: 609  -YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN- 666
             + +L      G+FQ+E +GMR+ +  M+P   + IIA +SLYRPGP++NI  Y  R + 
Sbjct: 648  LFDMLGRGDVAGVFQVEGAGMRRLMMEMKPRRFDHIIAAISLYRPGPMENIPEYIRRMHS 707

Query: 667  ----GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
                 K+ +    P ++P+LK+T G+++YQEQ+++IA  L+GY+  +AD++R+A+ KK K
Sbjct: 708  SIYDNKDIVEYHTPALEPILKDTYGILVYQEQIIRIASDLAGYAPGDADMIRKAVAKKKK 767

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + M++ + +F  GA + G S+ +   I+  +  FA YGFNK+HAA YA ++ QTA++K H
Sbjct: 768  KLMEEHRIKFTEGAMERGFSREVCEAIWGDIEFFARYGFNKAHAADYAKVTCQTAFLKAH 827

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI----YYS 838
            YPVE+LAA +++E DN EK++++  +A+   I I PP +N   +DF + D+       + 
Sbjct: 828  YPVEYLAAMLSVERDNTEKVRRYFAEAKNLGIDIEPPDINRSDLDFTIEDDHERPCIRFG 887

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIK  G      I+ E  A+  F  L+D   RVD +++ +R LE ++ A   + +G +
Sbjct: 888  LGAIKNAGEAALNLILDERRANGTFADLQDLSERVDLRRVGKRALEFMIKARVFERWG-T 946

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI----------TLEKFSVEN 947
              Q L++LD I   +    +       ++F    G+                ++      
Sbjct: 947  MPQFLEALDRIVADSSKTHEAAAAGQMSLFGALGGSNGGNGGMKLTADLLKPVDSLEPIP 1006

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                 E E+  LG + S HP++    +L             T+ G  +R+A M+ + +  
Sbjct: 1007 HKQMLEWEKEALGVHVSEHPMERPLAMLTSHTSATIGGLDITMNGKQVRIAGMISTLRTL 1066

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+KG  + + T  +   + +   FP
Sbjct: 1067 TTKKGDPMAFATLEDMDNKIDLVLFP 1092


>gi|262066954|ref|ZP_06026566.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
            33693]
 gi|291379302|gb|EFE86820.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
            33693]
          Length = 1133

 Score =  909 bits (2349), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1033 (36%), Positives = 598/1033 (57%), Gaps = 36/1033 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSLLEG  S++N L K       ++A+TD  N+F A+EF +KA   GI+P
Sbjct: 4    NFVHLNLHTEYSLLEGVNSIDNFLVKAKELGMNSLAVTDYANMFCAIEFYEKAKKMGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +  ++              + ++ LL    EGY+ L++L S +Y     +  +
Sbjct: 64   IIGLELPLYEKEE-----------QNIFTLTLLAKDYEGYKNLVKLASELYKKKDNR-EL 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLF-GDRLYVNLQ 187
            RI    L+E   +GLI L+    G I +A   N  S+  +  +  + ++F  +  Y+ +Q
Sbjct: 112  RISKEILKE-HNKGLIALSSSMKGEIGKAILMNFPSEKLDSIVDEYIEIFSKENFYLEIQ 170

Query: 188  RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   + +    +   L    +L LVATNN  ++  + YE  D+++ +     +  K+R 
Sbjct: 171  ANELPENKVINDKFYDLVKEKKLELVATNNVHYVDRDGYELQDIVICIQSGWKLKDKNRK 230

Query: 247  RV-TPDHYLKNRSEMVS-IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R  + + YLK++ EM   +     +A+ENT  IA  C+  ++      P +   E  +  
Sbjct: 231  RAVSKELYLKSKEEMQRSLDEKFHKAIENTNYIASLCNLEIEFGNLQFPYY---EVPNQY 287

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L+      ++       I K    +D  +RL++EL+VI +M +SGYF++V DFI
Sbjct: 288  SGMDEYLKAICYENIKK------IYKENLTKDILERLEYELSVIIKMGYSGYFIVVWDFI 341

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AK+N IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD DID C+
Sbjct: 342  AYAKRNGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICR 401

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDE+I YV +KYG ERVA IITFG ++A+AA+RD+GR L +   ++DRL KL+    +
Sbjct: 402  ERRDELIDYVVHKYGRERVAHIITFGRMKARAAIRDIGRVLDIDLKKIDRLSKLV---SS 458

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 + + ++    +    D  + +++++S ++E   RH STHAAGI+I    L + VP
Sbjct: 459  FQTLEKTLKENVEVAKLYTTDIELQKVIDLSIRIENKVRHVSTHAAGILITKEDLDRTVP 518

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +Y D +  +  TQ+ MK +E  GL+K DFLGLK L+ +Q+++D++ + + + ++L  IP 
Sbjct: 519  IYLDEKEGVIATQYQMKELEDLGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDIELYKIPL 578

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD + + +L+   + G+FQLES G+R+ ++ ++P+ +EDI+AL++LYRPGP+ + +V  +
Sbjct: 579  DDKKVFEMLSQGDSTGVFQLESPGIRKIMKRLKPNKLEDIVALLALYRPGPLQSGMVDDF 638

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRAMGKK 
Sbjct: 639  INRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMANYSLGEADLLRRAMGKKN 698

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               M + +E+FI  A +N  ++  A  IFEL+ KFA YGFNKSH+ AYA+ISY TA++K 
Sbjct: 699  FAIMRENREKFIQRAVENNYTEEKADEIFELIDKFAGYGFNKSHSVAYAMISYWTAYLKA 758

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP  + AA MT E+     +  +  DA++  I I PP+VNTP   F++ ++ I YSLAA
Sbjct: 759  HYPAFYFAAIMTSEISETGDVAYYFNDAKEHRISIYPPNVNTPSAYFEIKNDGISYSLAA 818

Query: 842  IKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK +G   A+ I+E       +  L++F  R     +N+R LE+L+ +GALD    +R +
Sbjct: 819  IKNIGLNLAKKIVEDYEKHGTYTKLDEFMIRNKKNGMNKRALEALILSGALDELEGNRKE 878

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
               S+D +  +     K    +  N+F     T + K  L      N   +   E+  LG
Sbjct: 879  KFLSIDKVLDFVSKAPKTDEIQQMNLFGAASKTIN-KFALTNSDDFNLDEKMTKEKEFLG 937

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S HPLD Y+ I+    I    E +       I+    +   ++  T+K  ++   + 
Sbjct: 938  FYLSSHPLDKYRDIVTAFSINKLSE-IDIEESKVIKTFGTITGLKKVLTKKDEQMALFSI 996

Query: 1021 SEPAKEYEANFFP 1033
                ++     FP
Sbjct: 997  LCYDRKISCIVFP 1009


>gi|145640823|ref|ZP_01796405.1| DNA polymerase III subunit alpha [Haemophilus influenzae R3021]
 gi|145274337|gb|EDK14201.1| DNA polymerase III subunit alpha [Haemophilus influenzae 22.4-21]
          Length = 868

 Score =  908 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/880 (41%), Positives = 530/880 (60%), Gaps = 36/880 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1   MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +G++PIIG            +  +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61  SGMKPIIGA----------DVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGY 110

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 111 N-DLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFYL 168

Query: 185 NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            L R    +  R  Q  ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169 ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228

Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            RP   T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++    LP+F   +   
Sbjct: 229 KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL-- 286

Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                E+ L  K+  GLE RLA        +      Y +RL  EL+VI +M F GYFLI
Sbjct: 287 ---STEDFLVQKSKEGLEERLAFLFSDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404 VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
           P DP   +  +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464 PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
           +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523 TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582

Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
           +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583 RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655 IDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
           + + +   + +RK+GKE++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643 LQSGMVDNFIDRKHGKEEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
           AYA++SYQT W+KTH+P EF+AA MT E+DN +KI     +  +  +++ PP +N     
Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
           F V     I Y + AIKGVG      ++ A  +  F  + 
Sbjct: 823 FSVSEQGEIVYGIGAIKGVGEGPIEALVTARNEGGFSKIY 862


>gi|45644755|gb|AAS73143.1| predicted DNA polymerase III, alpha subunit [uncultured marine gamma
            proteobacterium EBAC20E09]
          Length = 1148

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1029 (35%), Positives = 596/1029 (57%), Gaps = 31/1029 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL+V S +S+ +G L+++ I++  +    P++A+TD +N+F  ++F  K  + GI+PI
Sbjct: 5    FSHLRVSSEFSISQGLLTIDQIVENASRLSMPSVALTDKSNMFGMVKFFNKCESVGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  +                       I+ L  T  G++ L++++S  +  +       
Sbjct: 65   SGVTIRTIF-----------DGDDKSYEILCLAKTNIGHKNLMKIISNAHNSNSFN-VPI 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L  +  + LI+ +GG    I      N+ + A K++  F++ FGD   + +QR  
Sbjct: 113  IKFDDLISLKDDILII-SGGRGTHIFEYLKINNFEDANKKIDKFRESFGDDFILEVQRTN 171

Query: 191  GYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D       ++ ++Y   +PL+ATN+ LF S++DY+ H+  + +     ++  +R +  
Sbjct: 172  RSDELEYFKNILPISYEKNIPLIATNDVLFSSQDDYDTHETKVCINTGKTLNDPNREKLF 231

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   Y K+  EM  +F+D    ++NT EI+++C+  L      LP +   +  D     +
Sbjct: 232  SDQQYFKSSKEMSLLFNDYSSLVDNTNEISKKCNVSLSTKGYFLPEYPVPKEHDF----D 287

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + ++  +   L   ++  A  K     +Y+ RL++EL+ I +M FS YFLIV DFI+W+K
Sbjct: 288  SFIKKLSSDRLNTLISGLAKDKQ---DEYKSRLNYELDQIKKMGFSSYFLIVYDFIEWSK 344

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N++PVGPGRGSGAGS+ AYAL IT +DP++  LLFERFLNP+R+SMPDFD+DFC ++RD
Sbjct: 345  NNDVPVGPGRGSGAGSLVAYALGITTLDPIKHGLLFERFLNPERLSMPDFDVDFCMEKRD 404

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI YV  KYG E V+QI TFG++ A+A +RDV RAL  P+   DR+ K+IP  P   + 
Sbjct: 405  LVIDYVSQKYGSEAVSQIATFGTMAARAVIRDVTRALGKPHPLGDRIAKMIPFTPGITLD 464

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             QA  +   F E    +  V  +++++ KLEG+ R+   HA G+VI    +S   P+Y D
Sbjct: 465  -QAKKEQPLFAETIRKEDEVREIVDLAYKLEGIARNVGKHAGGVVIAPGSISDFCPVYVD 523

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDLSLIPFDD 605
              SD  +TQ++   +EK GL+KFDFLGL+TLT++ +++  + +      K+DL+ IP DD
Sbjct: 524  RSSDSIMTQYDKDDVEKIGLVKFDFLGLRTLTVIDRAVKSINEDLDEFNKLDLNKIPLDD 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
               +  L++  T  +FQLESSGMR  ++ ++P   E+I AL++LYRPGP+++ +   + +
Sbjct: 584  KNVFKFLSSGKTTAVFQLESSGMRDLIKRLKPTKFEEITALLALYRPGPLNSGMHDEFVD 643

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G   +   H L++P+L+ET GVI+YQEQVM+ A++L+G+SL +AD+LRRAMGKK KE
Sbjct: 644  RKHGNSPVTYPHKLLEPILEETYGVIVYQEQVMEAARVLAGFSLGQADILRRAMGKKKKE 703

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM++Q+E F++G +KN IS + A +IF L+ +FA+YGFNKSH+AAYA+ISYQTA++KT+Y
Sbjct: 704  EMEEQREIFVNGCAKNDISTSNAEHIFNLINQFAEYGFNKSHSAAYALISYQTAYLKTYY 763

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAI 842
            P  F+A+ ++ E+ N +KI    Q+  + NI+++ P++      F V  N+   Y L AI
Sbjct: 764  PEYFMASVLSSELSNTDKIYSLIQECSRMNIKVLKPNILLGKKRFFVNANKEIEYGLGAI 823

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KGV ++   H+ E  A     +L DF  ++D K   ++ LE+L ++GA D    +R   +
Sbjct: 824  KGVASSFIDHVCEKRASIKLRNLWDFSQKIDIKLGGKKSLEALSYSGAFDSLAPTRNVAI 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            + + ++ +           K  ++FA  +  F      +       + + E E++ LG+Y
Sbjct: 884  ECVKDMVRDGANRSAKNNLKSGDLFAQVEEDFDPYEKFKDLPKLKLTEKLEFEKKSLGYY 943

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             SGHP+   +  ++ +     ++           L  ++ + +Q K RKG  + +V FS+
Sbjct: 944  LSGHPVLAIENKIKNLRTLAIQQVTN--DTQKASLVCLINNVRQIKDRKGQPLIFVNFSD 1001

Query: 1023 PAKEYEANF 1031
                 +   
Sbjct: 1002 GTGSMDGII 1010


>gi|68535846|ref|YP_250551.1| DNA polymerase III subunit alpha [Corynebacterium jeikeium K411]
 gi|260578063|ref|ZP_05845985.1| DNA polymerase III, alpha subunit [Corynebacterium jeikeium ATCC
            43734]
 gi|68263445|emb|CAI36933.1| DNA polymerase III, alpha subunit [Corynebacterium jeikeium K411]
 gi|258603803|gb|EEW17058.1| DNA polymerase III, alpha subunit [Corynebacterium jeikeium ATCC
            43734]
          Length = 1189

 Score =  908 bits (2346), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/1070 (29%), Positives = 531/1070 (49%), Gaps = 53/1070 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+G   ++ +  ++     PA+ +TD  N++ A  F +   AAG++P
Sbjct: 5    SFVHLHNHTEYSMLDGMAKVDLLAKEVVRQGMPAVGMTDHGNMYGADAFYRAMTAAGVKP 64

Query: 70   IIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  I  +             +  +   +         ++   A G + L  L S  
Sbjct: 65   IIGIEAYIAPESRFNQQRVRWGKPEQKSDDVSASGAYLHQTMIAENATGLRNLFYLSSMA 124

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF- 178
                Q  +  R+    + +  +EG+I  TG  SG +           A +    ++ ++ 
Sbjct: 125  SYEGQLGKWPRMDAELIAQ-HSEGIIATTGCPSGDVQTRLRLGQFDKALEAAGMWQDIYG 183

Query: 179  GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    ++     ++++    ELP + TN+  ++ E+   AH+V++ V   
Sbjct: 184  KDNFFLELMDHGLEIEKRVRDDLLEIGRKLELPPLVTNDCHYVLEQQAPAHEVMLCVQTG 243

Query: 238  TVVSQK------DRPRVTP-DHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHA 289
            + + +        R   +   +Y+++  ++ + +  ++P+  +NT+ +A R     +V  
Sbjct: 244  STLDEPTLDQGGKRFAFSGTGYYVRSAEDIRAQWDKEVPKGCDNTLWVAERVQDYSEVWE 303

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                  +              L ++ + GLE R     +       +Y  R  +E++VI 
Sbjct: 304  EHPHDRMPIADVPEGHTPTTWLTHEVMKGLEERFPGKEV-----PAEYIDRAKYEISVID 358

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLN
Sbjct: 359  MKGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGALVAYALTITNIDPMEHGLLFERFLN 418

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467
            P+R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K A++D  RA   Q 
Sbjct: 419  PERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQAIKDSARAHYGQA 478

Query: 468  PYSQVDRLCKLIPN-DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKL 518
             +   DR+ K +P    A  + L  I D            R+    DP V ++ + +  L
Sbjct: 479  GFQMADRITKALPPAIMAKDIPLHGITDPEHERYPEAAEVRQLIETDPDVAKIYKDALGL 538

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EG+ R A  HA  +++   PL   +PM++  +    +T +     E  GL+K DFLGL+ 
Sbjct: 539  EGVIRQAGVHACAVIMSSVPLLDCIPMWKRKQDGALITGWPYPACEAIGLLKMDFLGLRN 598

Query: 579  LTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  +L+ +   R   +DL  +   D  TY LL    TLG+FQL+S+GM++ L+ M+P
Sbjct: 599  LTVIGDALENIKANRDFDLDLENLDTVDDPTYELLARGETLGVFQLDSAGMQKLLKRMKP 658

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIY 691
                DI+A ++LYRPGP+  D    Y +RKNG++ IV IHP ++     +L+ET G+I+Y
Sbjct: 659  TGFNDIVAALALYRPGPMGVDAHWEYADRKNGRKPIVPIHPELEEALHEILEETYGLIVY 718

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQ+M+I+Q ++ Y+  +AD  R+AMGKK  E ++K+   F SG   NG S      +++
Sbjct: 719  QEQIMKISQKVANYTAGQADGFRKAMGKKKPEVLEKEFVTFESGMKSNGYSADAIKTLWD 778

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K   +  D R 
Sbjct: 779  TILPFAGYAFNKSHAAGYGLVSFWTAYLKANYAPEYMAALLTSVADKKDKSAIYLADCRH 838

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
              I+++ P VN     F+     I + L A++ VG      I+ +  +   F    D+  
Sbjct: 839  LGIRVLSPDVNDSRYTFQSVGKDIRFGLGAVRNVGEDVVNSIIASREEKGAFTDFSDYLD 898

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            ++D    N+RV ESL+ AGA D  G+ R  ++   ++        +K       ++FA  
Sbjct: 899  KIDLVAANKRVTESLIKAGAFDSLGHPRKGMVLVHEDAVDAVTATKKAAAKGQFDLFAGL 958

Query: 931  KGTFSD----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
             G        ++ +          +   E+ +LG Y SGHPLD ++  L           
Sbjct: 959  GGDDDAGDVFRVEVPD-QEWERKHQLALERDMLGLYVSGHPLDGFEDALDAQVDTPLTTV 1017

Query: 987  V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK-EYEANFFP 1033
            +        ++++  ++ + +++  R G+     T  +    + E   FP
Sbjct: 1018 LSGELPNNKDLKIGGIISAVERRIDRNGNPWAIATLEDQHGAQVELLVFP 1067


>gi|254874369|ref|ZP_05247079.1| dnaE, DNA polymerase III alpha subunit [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254840368|gb|EET18804.1| dnaE, DNA polymerase III alpha subunit [Francisella tularensis
           subsp. tularensis MA00-2987]
          Length = 941

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/957 (39%), Positives = 561/957 (58%), Gaps = 37/957 (3%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4   HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
            +L +D +               +  +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64  VELKVDTEFG-------------ICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
             SWL E+  E +I L GG  G + +A        A++ +    ++FG   Y+ ++ H+ 
Sbjct: 111 PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYI-IEIHKL 169

Query: 191 --GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
               +     + ++ A  + L  VATN ++F+  +DY+ H++   +   T +  + R  +
Sbjct: 170 EYENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP             E
Sbjct: 230 FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVNIPAG----LTE 285

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVIARMKFSGYFLIVAD 362
           +         GL+ RL +    +     +     Y+ RL  E+++I  M F GYFLIV D
Sbjct: 286 KEYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 346 FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C   RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  
Sbjct: 406 CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
           P      + + +     E   AD  V  ++E +QKLEGL R    HAAGIVI    +S  
Sbjct: 466 PGTTFK-KILHEGETLYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----DL 598
            P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +        D+
Sbjct: 525 APVYCENKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
           + IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI
Sbjct: 585 ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644

Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             + +RK+ +++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMG
Sbjct: 645 PTFIDRKHSRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704

Query: 719 KKIKEEMDKQKERFISGASKNG-ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
           KK  EEM+KQ++ F  GA+K+  I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTA
Sbjct: 705 KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764

Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIY 836
           W+K HYP E++AA M+ +M N +++ KF  D +  +I ++ P+VN    D   V    I 
Sbjct: 765 WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMSITVLAPNVNKSVYDCIAVSKGTIL 824

Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             L AIKG+G    + I+ E      F S+ D C RVD +K+N++ LE+L +AGA+    
Sbjct: 825 LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884

Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE-KFSVENSSVR 951
            +R     S++   K A +V +      +++F   +        LE +  VE  +++
Sbjct: 885 KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLK 941


>gi|119357011|ref|YP_911655.1| DNA polymerase III, alpha subunit [Chlorobium phaeobacteroides DSM
            266]
 gi|119354360|gb|ABL65231.1| DNA polymerase III, alpha subunit [Chlorobium phaeobacteroides DSM
            266]
          Length = 1190

 Score =  907 bits (2344), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1073 (34%), Positives = 574/1073 (53%), Gaps = 63/1073 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YS+    +    +    +     +IA+TD    F+  E   +A  AGI+ 
Sbjct: 2    DFVHLHVHTHYSMQSSPVFPAELFSACSRFGMKSIAVTDYCAAFNMPELFAEAENAGIKL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG +L +     L+  +  +T     PS++LLV   EGY+ L  L+SR           
Sbjct: 62   VIGTELYL-----LESASHHQTRHTVSPSLILLVQNDEGYRHLCILLSRAAKDGFINGMP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I  S L+     GLI L+G SSG I +A    + + AE  +  +K +FGD  Y+ LQ H
Sbjct: 117  HIESSLLEACHG-GLIALSGYSSGRIGKALLSGAQEEAESFVRYYKSVFGDNFYLELQNH 175

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247
            R  +D       + +A  + + LVATNN  +L  +D   +  ++A      + SQ  +  
Sbjct: 176  RMPFDDELRKATIAIAEKYAVELVATNNVHYLERKDAGCYRAMVANRTKEKLSSQNLQAH 235

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH-APILPRFIEKECDDIQKE 306
               ++YLK+  EM  +F D+ +AL NTV I+ +C++  +    PILP F   E      +
Sbjct: 236  AESEYYLKSPEEMAMLFPDISKALTNTVIISDKCTYAFKKKDHPILPHFHLPEG---FSD 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E   LR+    G + + A    A G  ++D   R++ EL VI +M FS YFLIV+D I  
Sbjct: 293  EAAYLRHLTWEGAKEKYADSG-ADGISSEDVEARIELELGVIEKMGFSSYFLIVSDLIAA 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++    VGPGRGS AGS+ AY   IT IDPL++ LLFERFLNP+R SMPD DIDF    
Sbjct: 352  SRRLGYSVGPGRGSAAGSIVAYLTGITRIDPLKYKLLFERFLNPERSSMPDIDIDFTPVG 411

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            + +V+ Y   KYG E VA++I  G+L AKAA+RD GR L++P   VDRL KL+P  P   
Sbjct: 412  KQKVLEYTVEKYGSESVAKVIAIGTLGAKAAIRDAGRVLEVPLPVVDRLAKLVPTKPGIT 471

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +AI++    ++   + P    LL+ ++ LEG  R+ S HA  +VI   PL + VP+Y
Sbjct: 472  LE-KAISEVRELKQFVESSPQTRELLDYARALEGRARNVSMHAGAVVITAGPLEEQVPLY 530

Query: 547  RD-----------------------------VRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
                                                 VTQF+  WIEKAGL+K D LGL+
Sbjct: 531  VSNKIETEVRKYADELDLGEPDPVVSKTAEVADEKQVVTQFDKNWIEKAGLLKIDLLGLE 590

Query: 578  TLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            TL ++ ++L  + +R  + ++L  +P +D +T+ +       GIFQ ESSGM+  +  +Q
Sbjct: 591  TLAVIDETLRLIQRRHQRTIELEKLPMNDRKTFRIFQEGKMAGIFQFESSGMQNYMTRLQ 650

Query: 637  PDCIEDIIALVSLYRPGPI--------DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            P  I DIIA+ +LYRPG +        + + ++ +RK+G+E I  +HP+++ +LKET GV
Sbjct: 651  PTQIGDIIAMSALYRPGALNARIDDHRNAVDLFVDRKHGREAIDYMHPMLEIILKETYGV 710

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQVMQI+Q++ G+SL++AD LR+AMGKK  E M K +E FI GA   G+   +A  
Sbjct: 711  IVYQEQVMQISQVMGGFSLAKADDLRKAMGKKKPEIMSKYEEDFIKGAVAQGVHDALARR 770

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            +F L+A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A +  E+ ++E++K    +
Sbjct: 771  VFTLMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFMTAILNSEIGDIERMKHLTDE 830

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIM--EASADKPF 862
            A+ F I  +PPS+N     F V ++     I   L+AIK VG   AR I+       + F
Sbjct: 831  AKSFGIATLPPSINKSDTLFSVEEHNGKASIRVGLSAIKQVG-GAARAIVTSRMRKKREF 889

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             +L D  + +D + +NR+ LE L+ +GALD     R +L+ ++D   K+ Q   ++ T  
Sbjct: 890  INLFDLTASLDLRLMNRKALECLILSGALDEIDEHRARLIANIDKAIKFGQVQNRSVTLG 949

Query: 923  HENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                F  E G   + I             S +  +E++++GFY S HPL  Y+       
Sbjct: 950  QCGFFTSEHGGVMEDIHYPDMDPADPMPDSEKLLHEKKLVGFYLSRHPLSTYRRDWEAFT 1009

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 ++         ++  +VVS +  + RKG  + +    +   + +   F
Sbjct: 1010 TLQL-DAKEVTPARQYKVIGVVVSVKPYQDRKGKPMLFGAIEDFTGKSDFTVF 1061


>gi|254672044|emb|CBA04625.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha275]
          Length = 991

 Score =  907 bits (2343), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/934 (40%), Positives = 539/934 (57%), Gaps = 29/934 (3%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    AGI+
Sbjct: 4   PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127
           PI    + I   +                  +L++    GY RL EL++  Y+  D+   
Sbjct: 64  PIGAADVWIGNPNAPDK----------PFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              +   WL+     GLI L+G   G +       +   A    L +   F D  Y+ LQ
Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173

Query: 188 RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           R   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K R
Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233

Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
           PR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   +   + 
Sbjct: 234 PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSL- 292

Query: 305 KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              ++ L   +  GL+ R   L      +     +Y++RLDFELN+I +MKF GYFLIV 
Sbjct: 293 ---DDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQKRLDFELNIIIQMKFPGYFLIVQ 349

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 350 DFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVD 409

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L KLIP 
Sbjct: 410 FCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPL 469

Query: 482 DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
           +   P+ L  A+  + + +E   A    D L+ +++KLE L R    HA G++I    +S
Sbjct: 470 EANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKIS 528

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
              P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       VD+ 
Sbjct: 529 DYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIVDVG 588

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI 
Sbjct: 589 KIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIP 648

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +  R  G+E    IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 649 DFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGK 707

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+
Sbjct: 708 KKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWL 767

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYS 838
           K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +I Y+
Sbjct: 768 KAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMKIRYA 827

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L AIKG G      I+ A      F  L +FC RV  + +NRR LE+L+  GA D    +
Sbjct: 828 LGAIKGTGEAAVESIIAARQSGGKFTGLLNFCERVGKEHMNRRTLEALIRGGAFDSIEPN 887

Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
           R  LL ++D     A   +K        +F H+ 
Sbjct: 888 RAMLLANIDLAMDNAD--QKAANANQGGLFRHDG 919


>gi|21673669|ref|NP_661734.1| DNA polymerase III, alpha subunit [Chlorobium tepidum TLS]
 gi|21646788|gb|AAM72076.1| DNA polymerase III, alpha subunit [Chlorobium tepidum TLS]
          Length = 1190

 Score =  905 bits (2339), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1079 (32%), Positives = 567/1079 (52%), Gaps = 65/1079 (6%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +   L  +  FVHL  H+ YS+    +   ++          A+A+TD   +F+  E   
Sbjct: 1    MQPDLRSALEFVHLHTHTHYSMQSSPIFPGDLFAACKKQGMTAVAVTDYGAMFNMPELFG 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            +A  A ++ I+G ++ +           G        +++LL+    GY+ +  ++SR  
Sbjct: 61   QAKKAEVKLIMGAEIYLA--------GTGSRDSGKPATLILLIRDDIGYRNMCVILSRAA 112

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                      +  S L+E   +GL+ L+   SG I RA    +   A      ++ L+G+
Sbjct: 113  RDGFSNGLPHVDRSVLEEC-RDGLVCLSAAHSGLIGRALLSGNETEAANFANYYRDLYGE 171

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQ+H   Y+       ++L+    +PLVATNN  +L   D   +  ++A      
Sbjct: 172  HFYLELQKHGAPYEEQLVPGTIRLSEQLGIPLVATNNVHYLDRRDSGCYRAMIANRTKQR 231

Query: 240  VSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++ ++   +   ++Y K+ +EM  +F +    L+NTV+IA  CS+      P LP+F   
Sbjct: 232  LNSQNLQCLPGHENYFKSAAEMSLLFDNAHGELDNTVKIAEACSYTFINKDPHLPKFPLP 291

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E  D    E+  LR+    G + +      A G   ++ + R++ EL VI +M +S YFL
Sbjct: 292  EGFD---SEKEYLRHLTWEGAKEKY---GAADGTIPEEVKARIELELGVIEKMGYSAYFL 345

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV+D I  ++K    VGPGRGS AGS+ AY   IT IDPL++ LLFERFLNP+R+SMPD 
Sbjct: 346  IVSDLIAASRKMGYSVGPGRGSAAGSIIAYLTGITRIDPLKYKLLFERFLNPERISMPDI 405

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDF    + +V+ Y   KYG E VA+++  G+L AKAA+RD GR L +P   VD+L KL
Sbjct: 406  DIDFTPVGKQKVLDYTVQKYGAESVAKVVAIGTLGAKAAIRDAGRVLDVPLKAVDQLAKL 465

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +P+ P   +   A  +    +     DP   +L++ ++ +EG  R+ S HA  +VI D  
Sbjct: 466  VPSRPGTSLE-DAFREVKELKRLVDTDPQYQQLVQYARAMEGRARNVSMHAGAVVITDGA 524

Query: 539  LSQLVPMY--------------------------RDVRSDLPVTQFNMKWIEKAGLIKFD 572
            L + VP+Y                                  VTQF+   IE+AGL+K D
Sbjct: 525  LEEQVPLYVSNKIETEERKYADEFDQNDIDGTKAESSDEKQVVTQFDKNCIEQAGLLKID 584

Query: 573  FLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            +LGL+TL ++ ++L  + +R  + +DL  +P DD +T+ +       GIFQ ESSGM+  
Sbjct: 585  YLGLETLAVIDETLRLIKKRHGIDIDLEKVPMDDRKTFRIFQEGKMAGIFQFESSGMQSY 644

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--------YNNRKNGKEKIVSIHPLIDPMLK 683
            +  +QP  I DIIA+ +LYRPG ++ ++         + +RK+G+E+I  +HP+++ +LK
Sbjct: 645  MMRLQPTTIGDIIAMSALYRPGALNAVIDEHRNAVDLFIDRKHGREEIDYMHPMLEEILK 704

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET GVI+YQEQVMQI+Q++  +SL +AD LR+AMGKK  + M K KE F+ GA+   ++K
Sbjct: 705  ETYGVIVYQEQVMQISQVMGRFSLGKADNLRKAMGKKDPKLMQKFKEEFVEGAASIDVNK 764

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +A  IF+L+A+FA YGFNKSH+AAY V++Y TA++K HY +EF+ A +  E+ + E++K
Sbjct: 765  ALATRIFDLMAEFAGYGFNKSHSAAYGVLAYWTAYLKAHYTIEFITAILNSEIGDTERMK 824

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEA--- 856
                +A+ F I ++PPS+N     F V +++    I   L+AIK VG   AR ++ A   
Sbjct: 825  HLTDEAKGFGIFMLPPSINKSDALFSVEEHKGRPCIRVGLSAIKQVGGG-ARAVVAARLR 883

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
               KPF +L D  + VD + +NR+ LE L+ AGALD    +R +LL ++D   K+ Q   
Sbjct: 884  RDGKPFLNLFDLTASVDLRAMNRKALECLIQAGALDEIDPNRGKLLANVDKAIKFGQIQN 943

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
            K  T      F  +       +             S + + E+R++GFY S HPLD ++ 
Sbjct: 944  KAVTLGQGGFFNDDFSDGQAGVHYPDLDNAEPMPESEKLQYEKRLVGFYLSHHPLDRFRR 1003

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                       +          +   ++VS +  + RKG ++ +    +   + +   F
Sbjct: 1004 DWEAFASLTL-DKRDVTPSKLYKAIGVIVSVKPYQDRKGKQMLFGVLEDFTGKADFTVF 1061


>gi|269120359|ref|YP_003308536.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386]
 gi|268614237|gb|ACZ08605.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC 33386]
          Length = 1122

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1027 (35%), Positives = 573/1027 (55%), Gaps = 36/1027 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ YSLLEG   +   LD+        +A+TDT  +F  +EF +KA   GI+PI
Sbjct: 6    FVHLKLHTEYSLLEGVGKIEEYLDRAKKLDIKQLAVTDT-AMFGVVEFYEKAFKKGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ +D                   S+ LL     GY+ L +L S  +     +   +
Sbjct: 65   IGLEIFMD-----------GFFSEGEYSLTLLARNQTGYKNLCKLSSLSFSR-FNRSRNK 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L++  +EGL +L+GG +  +  +         +  +    + FG+  YV +    
Sbjct: 113  IRYEELKK-HSEGLFILSGGINSELTESILTYKYSEFKNIITKLVQDFGEYFYVEVPAAE 171

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
               + +    +++A       VA N+  + +  D     +++++   T ++ ++      
Sbjct: 172  RL-KDKVKLYIEMAEECNAEYVAANDVYYPNFGDSILQKIMISIKDGTKINSENTELKYN 230

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            D YLK+  +M   FS   +A+EN+++IAR C+   +      P +   E     K E   
Sbjct: 231  DLYLKSAEQMKENFSGYEKAIENSLKIARECNVSFEFDKFKFPEYNLPEG----KSETEY 286

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            +R     GL+ +  +    K        +R ++EL++I +M ++GYF+IV DFI++AK N
Sbjct: 287  IRELVYDGLKKKYGEPLEEK------ITERAEYELDIINKMGYNGYFIIVWDFIKYAKDN 340

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I VGPGRGS AGS+ +YAL IT++DP++++L+FERFLNP+R+SMPD DIDF Q++R++V
Sbjct: 341  GIYVGPGRGSSAGSIVSYALNITEVDPIKYNLIFERFLNPERISMPDIDIDFDQEQREQV 400

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I YV  KYGHE+VA IITFG+L+A+AA+RDVGR L +   +VD++ KLIP+         
Sbjct: 401  IDYVVKKYGHEKVAHIITFGTLKARAAIRDVGRVLDINLKKVDKVAKLIPHFS---ELED 457

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A+ +    +    +D  V  +++ S KLEG  RHAS HAAG+VI    L   +P Y D R
Sbjct: 458  AVKNVRELKTLYNSDSEVRDMIDYSLKLEGKVRHASVHAAGMVISKDVLDDEIPTYSDGR 517

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
            +    TQ+ MK +E  G++K DFLGLK LT+L+K+++ +       + L  IP DD ETY
Sbjct: 518  ASFLSTQYQMKELEDLGILKMDFLGLKNLTILRKTMENIKITQGKVMVLDDIPLDDKETY 577

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNG 667
             +LT   TLG+FQ ES G+R+ ++ M+ +  EDI+AL++LYRPGP+ + +V  +   KN 
Sbjct: 578  KMLTAGDTLGVFQCESIGIRRLMQKMKIEKFEDIVALLALYRPGPLRSGMVDDFIASKNE 637

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
               I   H  +  +L ET GVI+YQEQV++I  +L+ Y++ E D LRRAMGKKI E M +
Sbjct: 638  GAAIKYPHEALIDVLSETYGVILYQEQVLKIVNVLANYTMGEGDSLRRAMGKKIPELMAQ 697

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +E FI  A +N I+   A  IF L+ KF+ YGF KSH+ AYA+++Y TA++KT+Y  EF
Sbjct: 698  NREVFIKRAVENNITPDKAEEIFNLIDKFSGYGFPKSHSVAYALVAYWTAYLKTNYFKEF 757

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             AA+M+ EM N++++  F  +AR   ++++ P VN    +F    + I + L AIK VG 
Sbjct: 758  FAATMSTEMYNIDRLSLFINEARDKGVKVLLPDVNLSAYEFLAEKDGIRFGLLAIKHVGI 817

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               + ++E   ++ FDS EDF   +  + LN++ LE+ VF+G+LD    +R ++  S+D 
Sbjct: 818  NIVKKVIEVRKNEKFDSYEDFVYNLKKEGLNKKQLEAFVFSGSLDKIHNNRKEMFSSIDR 877

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + ++ +    +  +    +F   K       ++EK    + S+  E E+  LG Y S HP
Sbjct: 878  VLEWCEKKFNSEEDLQMILFGG-KSQKIGLFSMEKSEEYSESLLLEKEKEFLGVYLSKHP 936

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKE 1026
            LD YK ++R +     +      +G   R+  +V   ++  T+K G  +      +   +
Sbjct: 937  LDNYKLLMRTIDKTRMDSL---KQGKRARVIGLVKDIKKMITKKTGEPMARFFVEDYGTK 993

Query: 1027 YEANFFP 1033
             E   FP
Sbjct: 994  AEVVCFP 1000


>gi|298244334|ref|ZP_06968140.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963]
 gi|297551815|gb|EFH85680.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963]
          Length = 1170

 Score =  904 bits (2337), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/1054 (30%), Positives = 539/1054 (51%), Gaps = 50/1054 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  F HL VH+ YSLL+G   +  ++ +  A     +AITD   ++ A+EF  +    GI
Sbjct: 2    ASDFAHLHVHTEYSLLDGLSRIPTLIKQAKALGMEHLAITDHGAMYGAMEFYLECQKQGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             P+IG +  +    N K              +VLL  T  GY+ L++L +  +       
Sbjct: 62   HPVIGMEAYLVDDVNYKPKKSN-----AYWHLVLLAHTQAGYENLMKLTTLGFTQGLYYG 116

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSSQVAEKRLLTFKKLF-GDRLYVN 185
              RI    L+    EGLI  +    G I            A + +  ++ +F  +  Y+ 
Sbjct: 117  KPRIDKKMLKN-HAEGLIATSSCLGGEIPELLVERQDMDSARRAVRWYQDVFGPENFYLE 175

Query: 186  LQRH---RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
             Q+H           + + Q+  +  +P + TN+  +++++   AHD+ + +        
Sbjct: 176  FQQHYGKGSPQDACNTGLYQIYQSMHVPAILTNDLHYVNKDQANAHDLFLCIQMGNRYDD 235

Query: 243  KDRPRVTPDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             DR R   D Y  K+  EM  ++ D+P+ L NTV +A RC          LP F      
Sbjct: 236  PDRFRFDSDEYFLKSPQEMALLYPDIPDVLRNTVLLAERCQIDPTAKKAGLPTFDIPAGF 295

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                  ++ L +  + G   R        G  +   ++++D+E ++I +  F+ YFLI  
Sbjct: 296  P---SPDDYLYDLCLKGARWRF-------GEVSTSVQEQIDYEFSIIKQKGFASYFLIQQ 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D   +A+ + I     RGS AGS+ AY L IT++DPLR+ LLFERF+NP+R  MPD D+D
Sbjct: 346  DVTNYARDHGI-TCLARGSAAGSLIAYCLGITNVDPLRYGLLFERFMNPERNDMPDIDMD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            +   RR+EVI Y   +YG E+ AQ++TF +L AK +++DV RAL       +R+ +LIP 
Sbjct: 405  YPDSRREEVINYTMQRYGLEKTAQMVTFNTLAAKGSVKDVARALGKT-DLGERITRLIPT 463

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   +   ++ D +  R     +  V  +++ +++LEGL R    HAAG+++  RPL++
Sbjct: 464  GPKVTLQ-SSLDDVAELRMLYTQNGEVSEIIDFARQLEGLNRSTGVHAAGVLLSARPLNE 522

Query: 542  LVPMYR-DVRSDLP--VTQFNMKWIEK-AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            +VP+ R D +      V  +  KW+E   GLIK+DFLGL  L++L+++L+F+A+   +  
Sbjct: 523  IVPLSRKDPKDPTTPLVCGYEHKWLEDNLGLIKYDFLGLANLSVLREALNFVARTQGEEL 582

Query: 598  LSLIPFDDH-----------ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            L      D            + + +L+    + +FQLES+ MR+ L+ ++P CIEDI+A+
Sbjct: 583  LLEHIPVDPTPDPVLRERREKAFAMLSRGDAIAVFQLESAKMREYLKQLKPTCIEDIMAM 642

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            V+LYRPGP+D+I  +   K+G++KI  + P +   L E+ GVI+YQ+QV+QIA  L+G+S
Sbjct: 643  VALYRPGPMDSIPEFVACKHGRKKIEYLDPRLSEWLAESYGVIVYQDQVLQIANNLAGFS 702

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
              + +  R+A+ KK  EE++  K  FI G   NG+    A  +FEL+  F  YGFNK+HA
Sbjct: 703  WGKVNKFRKALSKKKMEEVEGYKGDFIQGCVNNGMKAAAAEKLFELVLPFGGYGFNKAHA 762

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A+Y V++Y TA++K +YP E++AA++T +  + +++  F  +A +  ++++ P +N   +
Sbjct: 763  ASYGVVAYYTAYLKANYPAEYMAAALTADAGDSKQVAVFIAEAHKMGVKVLGPDINKSEL 822

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
             F V +  I + L AIKG+G      I+ A   + PF SL DFC RV    + + V+E+L
Sbjct: 823  GFSVEEGNIRFGLLAIKGIGEGPITEILRARTDNGPFTSLVDFCVRV---GVGKGVIENL 879

Query: 886  VFAGALDCFGYS--RMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEK 942
            + AGALD       R QLL S++    Y +   + R  +  ++F            +L +
Sbjct: 880  IKAGALDSLEGEGKRHQLLASVETAITYGKRERQAREREVFSLFKDLASAPVPLVFSLVE 939

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---ATIRGNNIRLAA 999
             +  +     + E+ ++G Y S HPL     +          E +   A +    I L  
Sbjct: 940  AAEISRKQLLDWEKELIGIYISPHPLTYLAHLFDGRVTHSTTELLEKGAEVGKGTITLGG 999

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++ + +   T+KG  +   T  +         FP
Sbjct: 1000 VITNIRAFSTKKGDMMCSFTLEDAQGGMVVTVFP 1033


>gi|237739930|ref|ZP_04570411.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
 gi|229421947|gb|EEO36994.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
          Length = 1133

 Score =  904 bits (2336), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1035 (36%), Positives = 601/1035 (58%), Gaps = 40/1035 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSLLEG  S+++ L +       ++A+TD  N+F A+EF +KA   GI+P
Sbjct: 4    NFVHLNLHTEYSLLEGVNSIDSFLTRAKELGMNSLAVTDYANMFCAIEFYEKAKKMGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +  ++              + ++ LL    EGY+ L++L S +Y   +    +
Sbjct: 64   IIGLELPLYEKEE-----------QNIFTLTLLAKDYEGYKNLVKLASELY-KKKDNGEL 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLF-GDRLYVNLQ 187
            RI    L+E  ++GLI L+    G I +A   N  S+  +  +  + ++F  +  Y+ +Q
Sbjct: 112  RISKGILKEY-SKGLIALSSSMKGEIGKAILMNFPSEKLDSIVDEYIEIFSKENFYLEIQ 170

Query: 188  RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   + +    +   LA    + LVATNN  ++  + YE  D+++ +     +  K+R 
Sbjct: 171  ANELPETKVINDKFYDLAKLKNIELVATNNVHYVDRDGYELQDIVICIQSGWKLKDKNRK 230

Query: 247  RV-TPDHYLKNRSEMVS-IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R  + + YLK++ EM   +     +A+ENT  IA  C+  ++      P +   E  +  
Sbjct: 231  RAVSKELYLKSKEEMQRSLDERFHKAIENTNYIASLCNLEIEFGNLQFPYY---EVPNQY 287

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L++     ++       I K    +D  +RL++EL+VI +M +SGYF++V DFI
Sbjct: 288  SGMDEYLKSICYENIKK------IYKENLTKDILERLEYELSVIIKMGYSGYFIVVWDFI 341

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AK+N IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD DID C+
Sbjct: 342  AYAKRNGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICR 401

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDE+I YV +KYG ERVA IITFG ++A+AA+RD+GR L +   ++DRL KL+    +
Sbjct: 402  ERRDELIDYVVHKYGRERVAHIITFGRMKARAAIRDIGRVLDIDLKKIDRLSKLV---SS 458

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 + + ++    +    D  + +++++S ++E   RH STHAAGI+I    L + VP
Sbjct: 459  FQTLEKTLKENVEVAKLYTTDIELQKVIDLSIRIENKIRHVSTHAAGILITKEDLDRTVP 518

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +Y D +  +  TQ+ MK +E  GL+K DFLGLK L+ +Q+++D++ + + + ++L  IP 
Sbjct: 519  IYLDEKEGVIATQYQMKELEDLGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDIELYKIPL 578

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD + + +L+   + G+FQLES+G+R+ ++ ++P+ +EDI+AL++LYRPGP+ + +V  +
Sbjct: 579  DDKKVFEMLSQGDSTGVFQLESTGIRKIMKRLKPNKLEDIVALLALYRPGPLQSGMVDDF 638

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRAMGKK 
Sbjct: 639  INRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMANYSLGEADLLRRAMGKKN 698

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               M + +E+FI  A +N  ++  A  IFEL+ KFA YGFNKSH+ AYA+ISY TA++K 
Sbjct: 699  FTIMRENREKFIQRAVENNYTEEKADEIFELIDKFAGYGFNKSHSVAYAMISYWTAYLKA 758

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP  + AA MT E+     +  +  DA++  I I PP+VNTP   F++ ++ I YSLAA
Sbjct: 759  HYPAFYFAAIMTSEISETGDVAYYFNDAKEHRISIYPPNVNTPSAYFEIKNDGISYSLAA 818

Query: 842  IKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK +G   A+ I+E       +  L++F  R     +N+R LE+L+ +GALD    +R +
Sbjct: 819  IKNLGLNLAKKIVEDYEKYGAYTKLDEFVLRNKKNGMNKRALEALILSGALDELEGNRKE 878

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
               S+D +  +     K    +  N+F     T  DK  L      +   +   E+  LG
Sbjct: 879  KFLSIDKVLDFVSKAPKTDEIQQMNLFGAASKTI-DKFVLTNSEDFSLDEKLTKEKEFLG 937

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S HPLD Y+ I+    I    E +       ++    ++  ++  T+K  ++   + 
Sbjct: 938  FYLSSHPLDKYRDIVTIFSINKLSE-IDMEETKVLKTFGTIMGLKKLLTKKDEQMALFSI 996

Query: 1021 S--EPAKEYEANFFP 1033
               +         FP
Sbjct: 997  LCYDRV--ISCIAFP 1009


>gi|227529180|ref|ZP_03959229.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227350905|gb|EEJ41196.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 1116

 Score =  903 bits (2335), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1032 (34%), Positives = 558/1032 (54%), Gaps = 54/1032 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV LQV SS+SLL   + +N ++         AIA+TD N L+ A++F   A  AGI+P
Sbjct: 2    DFVPLQVKSSFSLLRSPIRINELVTTAKERGYSAIALTDKNVLYGAIDFYNAAKKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG QL I + +             T   ++ L     GYQ L+EL +R    D  + ++
Sbjct: 62   VIGLQLTIALNN----------VDGTNLELLFLAKDRAGYQNLMELSTRQQTSD--RDTL 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    ++   +   +++       +           AE  ++       D+  + L  +
Sbjct: 110  PLTFEQIKPFLSSLYVII--PPQSTVFSWL------KAEDTVVNLLHESTDQDSLLLGIN 161

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRV 248
               D+ + S + QLA +H LPLV  +   +L+ +D  A  VL A+  +T + + +++ + 
Sbjct: 162  PQLDQIQRSTLTQLAASHSLPLVGVSPVEYLNADDLFASKVLQAIDANTQLEKVEEKAKE 221

Query: 249  TPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                YL+ +++++  +   +L +A + TVEIA +C+   +   PILP F         K 
Sbjct: 222  LGKDYLQPQADILRAYQAVNLEQAADKTVEIAVKCNIDFEFKQPILPHFDTPTG----KS 277

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR   + GL+ R     IA G    DY++RL  EL VI  M F  YFLIV D +++
Sbjct: 278  SAEYLRYLCIEGLKKR----QIAPGLKLVDYQKRLAKELKVIHEMGFDDYFLIVWDVMRF 333

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I   PGRGS AGS+ AYAL ITDIDPL+++LLFERFLNP+R  MPD D+D   +R
Sbjct: 334  AHRTKITTDPGRGSAAGSLVAYALAITDIDPLQYNLLFERFLNPERAQMPDIDLDIPDNR 393

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EV+ YV  KYGH RVAQIITFG+L AK  +RDV R   +    ++ L   +P+   H 
Sbjct: 394  RSEVLEYVHQKYGHNRVAQIITFGTLAAKQVIRDVSRVFGLNRYAINELTGALPHGL-HI 452

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                ++ +  R R      P    L  ++QKLEGL RH S HAAGIV+ ++PL ++VP+ 
Sbjct: 453  SLAGSLKESQRLRNLLNDHPEYRLLYRVAQKLEGLPRHYSIHAAGIVLSEKPLHEIVPLQ 512

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                  L +TQF    +E  GL+K DFLGL+ L+++  SL  + QR  + DLS I   D 
Sbjct: 513  NGS-EGLLMTQFPKDTVEALGLLKMDFLGLRNLSIMDNSLKLIRQRNPQFDLSKISLADS 571

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T G+FQ ES+G+R+ L  + PD  EDI+A+ +LYRPGP++NI  +  RK 
Sbjct: 572  KTLALFQKGLTDGVFQFESAGIREVLVNLHPDSFEDIVAVNALYRPGPLENIPHFIARKQ 631

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GKE      P ++P+L  T G+++YQEQVMQ+A +++G+SL EAD+LRRAM KK +  M+
Sbjct: 632  GKEHYQLPDPSLEPILGATYGILVYQEQVMQLASVMAGFSLGEADLLRRAMSKKKRATME 691

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              + +F++GA  NG S  +A  +F  + +FA+YGFN+SHA AY+ +++Q A++K +YP E
Sbjct: 692  GMRAKFMNGAQANGYSAELAKRVFNYIDQFANYGFNRSHAVAYSKMAFQMAYLKANYPAE 751

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  A M  E  NV+K+K   QDAR+  ++++ P +N     F +  N++++ L AIKG+ 
Sbjct: 752  FFTALMNAEP-NVDKLKMHVQDARRSGVKLVGPRINESQQQFSLSQNQLFFGLTAIKGLR 810

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                R I++    + P+  + +F SR+ SK     ++  L++AGA D  GY+R +++ +L
Sbjct: 811  RDFIREILQERQQNGPYKDIRNFISRLASKWQKPELIAPLIYAGAFDDLGYNRAEMIDAL 870

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI---TLEKFSVENSSVRFENEQRVLGFY 962
              +    Q            +F+      +D     T+        + R   E   LG Y
Sbjct: 871  PMLISGIQ------------LFSSTNELEADPELQSTIAARQEYPLTERLAKENEYLGVY 918

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFS 1021
             SGHP+  Y+ +  K  ++   +      G  + +  ++   +   T+K  R + +++ +
Sbjct: 919  LSGHPVTQYQDLAIKYRVQPASQL---RPGQTVTILMLINRVKTIHTKKDHRQMAFLSGT 975

Query: 1022 EPAKEYEANFFP 1033
            +   E EA  FP
Sbjct: 976  DQTGEIEATVFP 987


>gi|193212527|ref|YP_001998480.1| DNA polymerase III subunit alpha [Chlorobaculum parvum NCIB 8327]
 gi|193086004|gb|ACF11280.1| DNA polymerase III, alpha subunit [Chlorobaculum parvum NCIB 8327]
          Length = 1190

 Score =  903 bits (2333), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/1069 (33%), Positives = 562/1069 (52%), Gaps = 65/1069 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YS+    +    +           +A+TD   +F+  E   +A  A ++ I
Sbjct: 11   FVHLHTHTHYSMQSSPIFPGELFAACKKQGMTTVAVTDYGAMFNMPELFGQAAKAEVKLI 70

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ +   D                +++LL+    GY+ +  ++SR            
Sbjct: 71   MGSEIYLAGTDAHDTGRPA--------TLILLIRNDIGYRNMCVILSRAARDGFSNGLPH 122

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +  S L+E  +EGL  L+   SG I R     +   A K    ++ LFG+  Y+ LQ+H 
Sbjct: 123  VDRSVLKEC-SEGLTCLSAAHSGQIGRTLLAGNEAEAAKLAEQYRSLFGEHFYLELQKHG 181

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              Y+       ++LA    +PLVATNN  +L   D   +  ++A      ++ ++   + 
Sbjct: 182  VPYEELLVPATIRLAEQLGIPLVATNNVHYLDRRDSGCYRAMIANRTKERLNSQNLQCLP 241

Query: 250  P-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              ++Y K+ SEM ++F +  + L NTV+IA  CS+      P LP+F   E  D    E+
Sbjct: 242  GHENYFKSASEMSALFDNSHDELSNTVKIAEACSYKFVDQDPHLPKFPLPEGFD---SEK 298

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR+    G   +     +  G   ++ ++R++ EL VI +M +S YFLIV+D I  ++
Sbjct: 299  GYLRHLTWEGARNKY---GVEDGAIPEEVKERIELELGVIEKMGYSAYFLIVSDLIAASR 355

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +    VGPGRGS AGS+ AY   IT IDPL++ LLFERFLNP+R+SMPD DIDF    + 
Sbjct: 356  EMGYSVGPGRGSAAGSIIAYLTGITRIDPLKYKLLFERFLNPERISMPDIDIDFTPVGKQ 415

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +V+ Y   KYG E VA+++  G+L AKAA+RD GR L +P   VD+L KL+P+ P   + 
Sbjct: 416  KVLDYTVQKYGAESVAKVVAIGTLGAKAAIRDAGRVLDVPLKAVDQLAKLVPSKPGTSLK 475

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY-- 546
              A  +    +    +DP   +L++ ++ +EG  R+ S HA  +VI D  L + VP+Y  
Sbjct: 476  -DAFKEVKELKRLVDSDPQYQQLMQYARAMEGRARNVSMHAGAVVITDGALEEQVPLYVS 534

Query: 547  ------------------------RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
                                            VTQF+   IE+AGL+K D+LGL+TL ++
Sbjct: 535  NKIETEERKYADEFDQNDIDGTKAESSDEKQVVTQFDKNCIEQAGLLKIDYLGLETLAVI 594

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
             ++L  + +R  + ++L  +P DD +T+ +       GIFQ ESSGM+  +  +QP  I 
Sbjct: 595  DETLRLIKKRHGIDIELEKVPMDDRQTFRIFQEGKMAGIFQFESSGMQSYMTRLQPTTIG 654

Query: 642  DIIALVSLYRPGPIDNIVV--------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
            DIIA+ +LYRPG ++ ++         + +RK+G+E+I  +HP+++ +LKET GVI+YQE
Sbjct: 655  DIIAMSALYRPGALNAVIDEHRNAVDLFVDRKHGREEIDYMHPMLEEILKETYGVIVYQE 714

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQI+Q++  +SL +AD LR+AMGKK    M K KE F+ GA    +++ +A  IF+L+
Sbjct: 715  QVMQISQVMGRFSLGKADNLRKAMGKKNPALMQKFKEEFVQGAVSIDVNEALATRIFDLM 774

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
            A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A +  E+ + E++K    +A+ F 
Sbjct: 775  AEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFVTAILNSEIGDTERMKHLTDEAKGFG 834

Query: 814  IQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEA---SADKPFDSLE 866
            I  +PPS+N     F V +++    I   L+AIK VG   AR ++ A      KPF +L 
Sbjct: 835  IFTLPPSINQSDALFSVDEHKGKPCIRVGLSAIKQVG-NGARAVVAARLRRDGKPFANLF 893

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            D  + VD + +NR+ LE L+ AGALD    +R +LL ++D   K+ Q   K  T      
Sbjct: 894  DLTASVDLRAMNRKALECLIQAGALDEIDPNRGKLLANVDKAIKFGQIQNKAVTLGQGGF 953

Query: 927  FAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            F  +       I   +         S + ++E+R++GFY S HPLD Y+           
Sbjct: 954  FNDDFSNEQAGIYYPELDNGEPMPESEKLQHEKRLVGFYLSHHPLDRYRRDWEAFANLTL 1013

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +          +   ++VS +  + RKG ++ +    +   + +   F
Sbjct: 1014 -DMREVTPSKLYKTIGVIVSVKPYQDRKGKQMLFGVLEDFTGKADFTVF 1061


>gi|149198162|ref|ZP_01875209.1| DNA polymerase III, alpha subunit [Lentisphaera araneosa HTCC2155]
 gi|149138764|gb|EDM27170.1| DNA polymerase III, alpha subunit [Lentisphaera araneosa HTCC2155]
          Length = 1223

 Score =  903 bits (2333), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1020 (33%), Positives = 553/1020 (54%), Gaps = 26/1020 (2%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L+ A ++  ++ ++      A A+TD  N+  ++ F+     A I+PI+GC   ++   
Sbjct: 1    MLQSACTMPALIKRLEEGGFEAAALTDFANMCGSIAFTNGLKKANIKPILGCYTYLNNS- 59

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q  +   +   ++LL     GYQ L ++ ++ +L +      RI  S+L++  +
Sbjct: 60   ----RTQNPSNMSSFNGLILLAKNNVGYQNLCKINAQSHL-ESFHIKPRIDRSFLRQY-S 113

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH-RGYDRYRESQ 199
            EG+I +       I      N        L  +  +F  +  Y+ +Q+H R  D  +   
Sbjct: 114  EGIIAIAPFHDSDIASDLSKNIDPT--NALNFYVDIFGKENFYLEIQKHKREGDDEKYPL 171

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            V+QLA  +E+ LVA+    +   +    HD++  V   TV   +       ++YL    E
Sbjct: 172  VLQLAKDNEIGLVASQTVYYPEAKMAIPHDIVCCVGEKTVHDPQKLRFPEKNYYLHLPEE 231

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEALENT +IA +C             +      D  + ++  L    V GL
Sbjct: 232  MEGLFSDVPEALENTRKIANQCDVAFDTSE----HYPVYPMSD-DRTQQQFLLEICVGGL 286

Query: 320  EVRL-AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            + R        K    ++  +R DFEL VI +  +  YFL+V DFI W+K N+IPVGPGR
Sbjct: 287  KERYGLDHKNPKDQREKEIVERTDFELGVIHKSGYDSYFLVVWDFINWSKTNDIPVGPGR 346

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GSGAGS+ AY   IT+IDP++++LLFERFLNP+R+S PDFDIDFC+ RR EVI YV+ KY
Sbjct: 347  GSGAGSIVAYLTGITNIDPIKYNLLFERFLNPERISPPDFDIDFCERRRPEVIDYVRKKY 406

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD---- 494
            G E+VAQI T+G+++AKA ++DV RAL   +++ D++ KLIP D    +  +A+ D    
Sbjct: 407  GSEKVAQIGTYGTMKAKAVIKDVTRALGYEHTRADQITKLIPEDLKITL-HKALFDPKIK 465

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
                     ++  V ++++ +  LEGL R+   HA G++IGD+ L+ L+P+      ++ 
Sbjct: 466  SEELIALNDSEEWVKQIIDNAMPLEGLNRNMGIHACGVIIGDQELTNLIPLISGANGEV- 524

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLT 613
            VTQF+    E  GL+K DFLGL+TLTL++ +L  + +   +++D+  IP DD  TY L  
Sbjct: 525  VTQFSAGPCEDLGLLKMDFLGLRTLTLIKDTLGLIKENHDIEIDIEAIPIDDRRTYKLFQ 584

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
               T  +FQ ES+GM++ ++ +QP    D+IA+ +LYRPGPI  I  +  RK+G+E+I  
Sbjct: 585  EGKTTAVFQYESAGMQKYMKELQPTVFPDLIAMNALYRPGPIAYIPSFIERKHGREEITY 644

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +D  L+ET G+ +YQEQVM ++Q L  ++  EAD LR+AMGKK  + + + K +F+
Sbjct: 645  DCEGMDEYLQETYGITVYQEQVMLLSQKLGNFTKGEADTLRKAMGKKKMDLLAQLKPKFL 704

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
                 NG  +      +E    FA Y FNKSH+  YA ++YQTA++K HYP EF+AA MT
Sbjct: 705  DQGEGNGHDRKKLEETWEKWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEFMAAVMT 764

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
             E+ N +K+  F ++ R   ++++PP++N   V F V +  I ++L AIKGVGT+ +  I
Sbjct: 765  SELGNADKVTFFLEECRNLGLKVLPPNINKSKVTFSVENGAIRFALGAIKGVGTSASETI 824

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            +    +  ++S  + C RV    ++R+VLE ++ +G +D FG  R  L Q +D   +++ 
Sbjct: 825  VRIRKEGEYESFMNLCERVGHTNVSRKVLEGIIASGGMDEFGNKRSALTQFIDRALEHSS 884

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
                +      ++FA  +   +     +     +   + + E+ +LGFY +GHP+  +K 
Sbjct: 885  SKANDLAMGQMSLFAEVEEVNTISPD-DSMPEWDLRYKLDMEKTLLGFYATGHPVGEHKQ 943

Query: 974  ILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +++K                 + RL  M+ +   +KT+KG         + +   E   +
Sbjct: 944  LIKKFSSNSITGLKKQSEDRAVARLGVMISNLNLRKTKKGKTFASFNAEDLSDGIECICW 1003


>gi|145219820|ref|YP_001130529.1| DNA polymerase III, alpha subunit [Prosthecochloris vibrioformis DSM
            265]
 gi|145205984|gb|ABP37027.1| DNA polymerase III, alpha subunit [Chlorobium phaeovibrioides DSM
            265]
          Length = 1187

 Score =  902 bits (2331), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1069 (34%), Positives = 564/1069 (52%), Gaps = 58/1069 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YS+    +    + +  A     +IA+TD   +F+  E   +A  +GI+ 
Sbjct: 2    DFVHLHAHTHYSMQSSPVFPGQLFEAAAKLGMQSIAVTDYGAIFNMPELFSEAEKSGIRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ +    +    +Q     P   S++LLV    GY+ L  L+SR           
Sbjct: 62   IIGSEILLRETSH----HQDGRNTP-ASSLILLVQNDTGYRNLCILLSRAARDGFVDGMP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +  S  +E    GL+ L+G SSG I R+    +   A +  + ++ +FGDR Y+ LQRH
Sbjct: 117  HLERSLFREFHG-GLVCLSGYSSGRIGRSLLAGAVDDAREHAVFYRDIFGDRFYLELQRH 175

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              + D    S  + LA    + +VATNN  +L  +D + +  + A+     +S ++   +
Sbjct: 176  NSHFDDELNSSTIALAEECGVGVVATNNIHYLERKDSDCYRAMAALKAKQKLSSQNLSAL 235

Query: 249  TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               +H+LK+ +EM  +F D    L NTV IA  CSF+ +   PILP F   E      +E
Sbjct: 236  PGSEHFLKSPAEMRELFGDGHGELSNTVFIAESCSFVFREKEPILPHFPLPEG---FADE 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR+    G + +   G        ++ R R++ EL VI +M FS YFLIV+D I  +
Sbjct: 293  AAYLRHLTAEGAKEKYP-GISEDEPSQEEVRDRIELELGVIEKMGFSSYFLIVSDLIAAS 351

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++    VGPGRGS AGS+ AY   IT IDPLR+ LLFERFLNP+R+SMPD DIDF    +
Sbjct: 352  RRLGYSVGPGRGSAAGSIVAYLTGITRIDPLRYKLLFERFLNPERLSMPDIDIDFTPVGK 411

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +V+ Y   +YG E VA+++  G+L AKAA+RD  R L +P S  D+L KL+P  P   +
Sbjct: 412  QKVLDYTVERYGAESVAKVVAIGTLGAKAAIRDAARVLDVPLSVADQLAKLVPQRPGITL 471

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY- 546
               A+++    +E   A P    L+  +  LEG  R+ S HA  +VI   PL + VP+Y 
Sbjct: 472  ET-ALSEVRELKEQAEATPQNRELMTYASALEGRARNVSVHAGAVVITGGPLEEQVPLYV 530

Query: 547  --------------------------RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
                                              +TQF+  WIE AGL+K D+LGL+TL 
Sbjct: 531  SNRIETEARVSLDAIAPEAPQPGKHADPSAGKQVITQFDKNWIETAGLLKIDYLGLETLA 590

Query: 581  LLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++ ++L  + +R  V++DL  +P  D +T+ +       GIFQ ESSGM+  +  +QP  
Sbjct: 591  VIDETLQLIRRRHNVEIDLEKVPMTDRKTFRIFQEGKMAGIFQFESSGMQSYMTRLQPTQ 650

Query: 640  IEDIIALVSLYRPGPIDN--------IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            I DIIA+ +LYRPG ++         + ++ +RK+G+E I  +HP+++ +LKET GVI+Y
Sbjct: 651  IGDIIAMSALYRPGALNARIDEKRNAVDLFVDRKHGREVIDYMHPMLETILKETYGVIVY 710

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQI+Q++ G+SL++AD LR+AMGKK  E M++ K  F+ GA   G+  T+A  +FE
Sbjct: 711  QEQVMQISQVMGGFSLAKADNLRKAMGKKKPEIMERFKVDFVQGAVAQGVHDTLATRVFE 770

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            L+A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A +  E+ + E++K    +AR 
Sbjct: 771  LMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFMTAILNSEIGDTERMKHLTDEARS 830

Query: 812  FNIQIMPPSVNTPCVDFKVGD----NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLE 866
            F I  +PPS+N     F V +      I   L+AIK VG      I       + F +L 
Sbjct: 831  FGIATLPPSINRSDAIFSVEESPDGAAIRVGLSAIKQVGGAAKAIIAARLRRKREFLNLF 890

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            D  + VD + +NR+ LE L+ AGA D     R +L+ ++D   K+ Q   ++        
Sbjct: 891  DLTASVDQRVMNRKALECLILAGAFDEIDSHRARLIANIDKAIKFGQIENRSAALGQCGF 950

Query: 927  FAHEKGTFSDKITLEKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            F  E+G   +                 + ++E+R++GFY S HPL  ++   +       
Sbjct: 951  FTAEEGAVQEDGHYPDMENALQMPEQEKLQHEKRLVGFYLSRHPLSPWRRDWQAFASLHL 1010

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             E    +     R+  +VVS +  + RKG ++ + +  +   + +   F
Sbjct: 1011 NE-RDVVAQRQYRIIGLVVSTKPYQDRKGKQMLFGSIEDFTGKADFTVF 1058


>gi|328955785|ref|YP_004373118.1| DNA polymerase III, alpha subunit [Coriobacterium glomerans PW2]
 gi|328456109|gb|AEB07303.1| DNA polymerase III, alpha subunit [Coriobacterium glomerans PW2]
          Length = 1274

 Score =  900 bits (2327), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1147 (30%), Positives = 551/1147 (48%), Gaps = 133/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAAD--------------QQPAIAIT-------- 47
            +FVHL  HS YS+L+GA  + +++++                    P +A+         
Sbjct: 2    AFVHLHNHSEYSMLDGATRIEDMVERAVELGMPAVALTDHGYMYGIPQLALACNKVNHDM 61

Query: 48   ----------------------------DTNNLFSALEFSQKACAAG----------IQP 69
                                        D       L   Q     G          I+P
Sbjct: 62   PEYRVWSHDAAFLAKGRGDELEDPDARSDPRGHAQHLRDMQAWREHGSLESVRPRPLIKP 121

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I GC++     + L   ++     P +  ++LL     GY  L++LVS   +        
Sbjct: 122  IFGCEVYFTPDETLARDHK-----PELYHLILLARNEVGYVNLMQLVSEAAVSG-FYYKP 175

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+ L  L+    EG+I  +   +G I R     +++ A     TF+ LF     Y+ +Q 
Sbjct: 176  RVTLDNLRR-HREGIIGSSACLAGVIPRCIDEGNTEQAIIWAETFRDLFEPGSFYIEIQE 234

Query: 189  HRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            H         D     Q++++A    + ++ATN+  +L+  D    D+++ +  +  +  
Sbjct: 235  HGITTDAGMTDEQLSHQLIEIAARVGVKVIATNDFHYLTRADAPVQDLMLCIGTNAKMDD 294

Query: 243  KDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             +R R+   + Y+K+  EM ++F   PEAL+NTVE+A RC   L   + ILPRF      
Sbjct: 295  PNRMRMQGSEFYMKSEEEMRALFPYCPEALDNTVELAERCEVELDWDSIILPRFP---GL 351

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D  +  E++ R +   GL  R       +     +  +R ++E  VI    F+ YFLIVA
Sbjct: 352  DEGETHESQFRRECERGLARRYGDDWREREISGVNIAERFEYEYRVICDKGFAAYFLIVA 411

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D+++WAK+N I VGPGRGS AG++ AYA+ IT  DPL   L+FERFL+P+R  MPD D+D
Sbjct: 412  DYVRWAKENGIGVGPGRGSAAGAIVAYAMDITTFDPLENGLMFERFLSPERAEMPDIDMD 471

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR EV+ YV+ +YG ++V  +IT+ +++AK A+ D  R L  P S   RL K+I +
Sbjct: 472  FDDERRLEVVEYVRGRYGADKVTHVITYSTIKAKQAINDAARVLDYPVSTGQRLSKMISS 531

Query: 482  DPAHPVS-------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             P+  +S        +    +  F +A   D    R+++ +  +EGL R    HA  ++I
Sbjct: 532  APSVKLSQVLKQQKKKEELYNPDFADAYRGDDDARRIIDAALSIEGLTRGEGVHACAVLI 591

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRG 593
               P+++ VP   D +  + +TQ+    +   GL+K DFLGL+TLT++ K+   + A  G
Sbjct: 592  CRDPVNEHVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKANILANFG 651

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +VD+  IPFDD   + L+    T G+FQ+ES+GM   ++ M+P   + ++AL++LYRPG
Sbjct: 652  TEVDVDAIPFDDPAIFELMAAGRTAGVFQVESAGMTATIKNMRPSEFKHVVALIALYRPG 711

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+   +V  Y +R +G++K+V     + P+L+ET G I+YQEQVMQI+  +SG++  E+D
Sbjct: 712  PLGAGMVADYIDRMHGRKKVVYYDNRLAPLLEETYGTIVYQEQVMQISMHMSGFTAGESD 771

Query: 712  VLRRAMGKKIKEEM------------DKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
             +R+A+ KK  E M            +  ++ +++GA +N  S+ IA  I+  + KFA+Y
Sbjct: 772  KVRKAVAKKHIELMETVVQHWDDGTDETMQDHWMNGAVRNDFSRAIAEQIWADVLKFAEY 831

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSH+A YA++  QTAW+K HYP E++AA +T      EKI  +    R   I+++PP
Sbjct: 832  AFNKSHSAGYAILVMQTAWLKAHYPYEYMAAVLTSFTGKTEKIVHYISACRHEGIEVLPP 891

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
             +N    DF      I + LA I+GVG   AR I+E       F +L D+  R+D    N
Sbjct: 892  DINESNKDFTAVHEGIRFGLAGIRGVGEGVARTIIEERERGGAFKNLHDYMERLDPACAN 951

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLD-----NIQKYAQWVEKNRTNKHENIF----AH 929
            RRV E+L+ AGA D  G+ R QL+  +D     NI        K R     + F      
Sbjct: 952  RRVCEALIKAGAFDASGFPRRQLMGFIDKNNPENILDAVVRRNKTRATGQVSFFDVLGDV 1011

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--- 986
            E   F  K+        +   +   E+ VLG Y S HPL  Y+  L +       +    
Sbjct: 1012 EGSGFEVKVPEPDGQEWDRHTKLAQEREVLGIYVSDHPLRPYECALARARDYALSQIEVG 1071

Query: 987  --------------------VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
                                 A         A MV    ++ T+ G  +  V   +   E
Sbjct: 1072 EEIDAALGGDAPTASAPAAGQAIPEDRAFWFAGMVADVSKRVTKNGDAMAIVRLEDMEGE 1131

Query: 1027 YEANFFP 1033
                 FP
Sbjct: 1132 ATVVVFP 1138


>gi|158520278|ref|YP_001528148.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3]
 gi|158509104|gb|ABW66071.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3]
          Length = 1217

 Score =  900 bits (2326), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1044 (32%), Positives = 533/1044 (51%), Gaps = 44/1044 (4%)

Query: 5    LEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +   P  FVHL VH+ YSLL+G +  ++++ +    + PA+AITD   +F  ++F  +A 
Sbjct: 1    MTTVPDQFVHLHVHTCYSLLDGIIRPDDLVARAVEYKMPAVAITDHGTMFGVIQFYMEAV 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGI+PIIGC+  +  +    + ++       +  +VLL  T EGY+ L  L +     D
Sbjct: 61   RAGIKPIIGCECYVAPRT---IADKTPADHAGLSHLVLLAETMEGYRNLCRLATIAQQ-D 116

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-L 182
                  RI  + LQ+   +GLI L+    G I           A+     +  + GDR  
Sbjct: 117  GFFHKPRIDKALLQK-HAKGLIGLSACLKGEIPHLICRGRQDEADAAARQYCDMLGDRNF 175

Query: 183  YVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ +Q +   ++    + ++ ++    +PLV TN+  +L  ED  AH++ + +     + 
Sbjct: 176  FLEVQNNGLPEQETVNNALLDMSRRLSIPLVGTNDCHYLDPEDSRAHEIALCLQTGQTIH 235

Query: 242  QKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              DR +   +    K+  EM       P A  NTV IA RC       A   P       
Sbjct: 236  DTDRLKFDTNQLNFKSTGEMCVFLEPFPRAAANTVAIAERCQVAFDFSARHFPVLETPPG 295

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ-DYRQRLDFELNVIARMKFSGYFLI 359
                K   + L + A+AGL+ R         +  +  Y+QRL +EL VI  M   GYFLI
Sbjct: 296  ----KTMADMLEDSAMAGLKKRWQHICKQSSHADKSVYQQRLAYELAVINEMGAPGYFLI 351

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            +ADFI +AK N I  GPGRGS  GS+  Y L IT +DP+   LLFERFLNP+R  MPD D
Sbjct: 352  IADFIAYAKNNGILTGPGRGSAPGSLVCYCLGITGVDPIEHGLLFERFLNPERNVMPDID 411

Query: 420  IDFCQDRRDEVIRYVQNKY----GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            +D C + R+++ +Y+ +KY    G +  A I T G+++++AALR+VGRAL MP   V+++
Sbjct: 412  VDICINGREKIHQYLMDKYNRDDGEDYAACIATLGTMRSRAALREVGRALIMPLDDVNKV 471

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KLIP  P       A+  +   R    + P    L+++ +KLEGL  H   +AAGIV+ 
Sbjct: 472  AKLIP--PGARSLDDALKKEPALRALIDSKPEFGELMDVIRKLEGLPFHILMNAAGIVLS 529

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594
            D+PL+   P+YR       +TQ + + +E  GL + D LG++ LT++  +L  +  Q   
Sbjct: 530  DKPLTCYTPLYRFKGE--MITQLDARSLETMGLARLDLLGMRDLTVISDTLQLIKNQGRQ 587

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              DLS I   D  T  LL+   T G+FQL S+GM++ L   +P  + ++  L++LYRPG 
Sbjct: 588  TPDLSRIDTTDAATCQLLSKGDTFGVFQLASTGMKELLVKARPRSLSEVAVLIALYRPGL 647

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            ++N +V  Y  RK G +        ++P+LKET G+ +YQEQ+MQ  Q+L+GY+  ++D 
Sbjct: 648  LENGMVADYLGRKQGLKDTTYPTAKLEPILKETCGLPVYQEQIMQAVQVLAGYTPGQSDD 707

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
             R+AMGK+I E++   ++RFI+GA+  GI K  A+ +FE L  F  YGFNK+H+ AYA I
Sbjct: 708  FRKAMGKRIAEKIADHRQRFINGAAAKGIDKATALQLFEQLEYFGAYGFNKAHSIAYAFI 767

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            ++Q A +K H+P EF+A  + +    V++I +   + R  NI ++PP VN     F V +
Sbjct: 768  AWQMACLKAHFPAEFMAVWLDISFGCVDRIARLIGECRDSNIPVLPPDVNQSARQFTVVN 827

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKK----LNRRVLESLVF 887
             +I   LA +K         I+    A  PF SL DFC+R+ + +     +R+ LE+LV 
Sbjct: 828  GQIRCGLACVKKTDKGLIDAIIAERTAAGPFVSLSDFCNRMSAGRPELLQDRKALENLVK 887

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGA D  G +R Q++  LD I K +  +++ R                    L +    +
Sbjct: 888  AGAFDSTGATRSQMMAVLDEILKPSLDLQQPRK--------------PAVPALPEVGEWS 933

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +R   E+R +G   +  P       L++             +G  + +  +  + + K
Sbjct: 934  PHLRRALEKRAMGICLTPAPPAYCHAKLKRPTTTPLCSIYENPQGGRVAVDGIWKAVEYK 993

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANF 1031
            + + G  +      +     E   
Sbjct: 994  QGKDGCPMALAELEDNNAAIEVVI 1017


>gi|254304372|ref|ZP_04971730.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
            nucleatum subsp. polymorphum ATCC 10953]
 gi|148324564|gb|EDK89814.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
            nucleatum subsp. polymorphum ATCC 10953]
          Length = 1133

 Score =  899 bits (2324), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1036 (37%), Positives = 599/1036 (57%), Gaps = 42/1036 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +H+ YSL EG  S+++ L K       ++A+TD  N+F A+EF QKA   GI+P
Sbjct: 4    NFVHLNLHTEYSLSEGVNSIDSFLVKAKELGMTSLAVTDYANMFCAIEFYQKAKKMGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L I  +D              + S+ LL     GY+ L++L S +Y  ++ ++  
Sbjct: 64   IIGLELPISNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKNNENRELK 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRLYVNLQ 187
             +    L+E  ++ LI L+   +G I +A   NSS     K +  + ++F  +  Y+ +Q
Sbjct: 113  -LNKEILKE-HSQDLIALSSSMNGEIGKAILTNSSDEKVNKIIDEYIEIFSKENFYLEIQ 170

Query: 188  RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   + +    +   LA  H+L LVATNN  ++  + YE  D+++ +     V +K+R 
Sbjct: 171  ANELSETKIINDRFYDLAKFHDLELVATNNVYYVDRDGYELQDIIICIQSGLKVKEKNRK 230

Query: 247  RV-TPDHYLKNRSEMVS-IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R  + + YLK++ EM   +     +A+EN   IA  C+  +       P +   E     
Sbjct: 231  RAISKELYLKSKDEMKRFLGEKFEKAIENANYIADLCNVEIGFGNLQFPYY---EVPSEY 287

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L+      ++    +         +D   RL++EL+VI +M +SGYF++V DFI
Sbjct: 288  SGMDEYLKTICHTNIKKLYKEDL------TKDILDRLEYELSVIIKMGYSGYFIVVWDFI 341

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD DID C+
Sbjct: 342  SYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICR 401

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+L KL+    A
Sbjct: 402  ERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLSKLVSPFQA 461

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               +L+   ++    +    D  + ++++++ ++E   RH STHAAGI+I    L + VP
Sbjct: 462  LEKTLK---ENVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILITKEDLDKTVP 518

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + V +DL  IP 
Sbjct: 519  IYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNVDIDLYKIPL 578

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD + +H+L+   + G+FQLES G+R+ ++ ++PD  EDI+AL++LYRPGP+ + +V  +
Sbjct: 579  DDKKVFHMLSLGDSTGVFQLESPGIRKIMKRLKPDKFEDIVALLALYRPGPLQSGMVDDF 638

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRAMGKK 
Sbjct: 639  INRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRAMGKKN 698

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               M + +E+FI  A  NG +   +  IFEL+ KFA YGFNKSH+ AYA+ISY TA+ K 
Sbjct: 699  FAIMRENREKFIERAIHNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWTAYFKA 758

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YP  + AA MT E+     I  +  DA++  +++  P+VN+P   F+V +  I YSLAA
Sbjct: 759  YYPAFYYAAVMTSEISETGDIAYYFNDAKEHGVRVYSPNVNSPSAYFEVKNEGITYSLAA 818

Query: 842  IKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GALD    +R +
Sbjct: 819  IKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIKGNRKE 878

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
               S+D +  Y+    K    +  N+F     T  DK  L          +   EQ  LG
Sbjct: 879  KFLSIDKVLDYSSKAPKTDEIQQMNLFGAAAKTI-DKFNLAISEDFTLDEKLNKEQEFLG 937

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            FY S HPLD YK IL    IK   E    + GN + +    + + ++  T+K  ++    
Sbjct: 938  FYLSSHPLDRYKDILTTFSIKKLSEF--DLEGNQVIKTFGTITNLKKTITKKEEQMAMFN 995

Query: 1020 FS--EPAKEYEANFFP 1033
             S  +         FP
Sbjct: 996  LSCYDRT--ISCIAFP 1009


>gi|88608539|ref|YP_506064.1| DNA polymerase III, alpha subunit [Neorickettsia sennetsu str.
            Miyayama]
 gi|88600708|gb|ABD46176.1| DNA polymerase III, alpha subunit [Neorickettsia sennetsu str.
            Miyayama]
          Length = 1077

 Score =  897 bits (2319), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/1018 (42%), Positives = 613/1018 (60%), Gaps = 77/1018 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL+V S YSLL        I+D   A   PA+A+TD + +  ALEF++ A A+GIQP
Sbjct: 5    TFVHLRVRSDYSLLRAVTKPRRIVDLARAAGMPAVALTDIDTMAGALEFAEYAKASGIQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L I                     ++L+    EGY  +I+L   + L        
Sbjct: 65   IIGIDLSISHN-------------RVDSRVLLIAKNEEGYHNMIKLSGIVSLR------- 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+ L+ +    ++GLI+L     G        + S  AE  +   K++FG  L+V +QR 
Sbjct: 105  RVALNEVF-THSKGLILLL----GEFFIDAINSYSIDAETLVSDLKQVFGKDLFVEIQRL 159

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               ++  E +++QL Y H +P VATN+ LF   +  EAHDVL  +   T V+  +R   +
Sbjct: 160  G--NQSAEEKLIQLGYEHNIPFVATNDVLFPDTDFREAHDVLTCIGSLTYVNDINRVHYS 217

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P+ Y K+  EM+++F+DL EAL NTV IARRCSF+ +V +PILP+F      + + +E +
Sbjct: 218  PESYFKSAEEMIALFADLKEALHNTVLIARRCSFMPEVRSPILPKF------ECEMDESD 271

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ELR  +  GL  R+           Q+Y  RL++EL +I  M ++GYFLIVADFI+W+K 
Sbjct: 272  ELRRLSYIGLHRRMGADV------PQNYLDRLEYELGIIIDMNYAGYFLIVADFIRWSKA 325

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I VGPGRGSG GS+ A+ L IT +DPL+F+L FERFLNP R+SMPDFD+DFCQ++R  
Sbjct: 326  NGIVVGPGRGSGVGSIVAWCLGITGLDPLKFALFFERFLNPVRVSMPDFDVDFCQEKRHL 385

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI YV+ KYG   VAQI+TFG+LQ +AALRDVGR LQ+PY +VDR+CK+IPN+PA+P+SL
Sbjct: 386  VIEYVRKKYG--HVAQIMTFGTLQPRAALRDVGRVLQLPYGRVDRICKMIPNNPANPISL 443

Query: 490  Q-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            Q AI  D   +     D S+ +LL+++ KLEG  RH STHAAGIVI D P+   +P+Y D
Sbjct: 444  QEAINLDKDLQRESEDDESIAKLLDLALKLEGTLRHTSTHAAGIVISDTPIEDYLPVYHD 503

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
              SD+PVTQ++MK++EKAGLIKFDFLGLKTLT++ ++   +  +    D+  IP DD  T
Sbjct: 504  KESDIPVTQYSMKYVEKAGLIKFDFLGLKTLTVINQACLLVRLKNPNFDIDSIPLDDKRT 563

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y LL+    +G+FQL+++ M + L+ + PDC EDIIAL+SL RPGP+ NI  Y  RK+GK
Sbjct: 564  YDLLSAGNAIGVFQLDNAYMCETLKRLHPDCFEDIIALISLNRPGPMANIPTYIARKHGK 623

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E +   HPL++  LKET GV+IYQEQVM++ +LL+GY+L+EAD+LRR MGKKI+ EM +Q
Sbjct: 624  EAVKYPHPLLESSLKETFGVVIYQEQVMEMVRLLAGYTLAEADILRRVMGKKIRAEMSEQ 683

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
             E+F+ GA +NGI    A  IFE++ KFA YGFNKSHAAAYA+ISYQTA++K ++P+EF 
Sbjct: 684  AEKFVEGAKRNGIETERAQEIFEMIEKFAGYGFNKSHAAAYALISYQTAFLKANFPIEFT 743

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             A++ LE+ + +K+    QDA+ + I I+PP +N   + F + DN I YSLAA+K VG  
Sbjct: 744  TAALNLELHHTDKLAILIQDAKNYGITILPPDINKSKILFSIEDNAIRYSLAALKNVGEA 803

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I   S   PF ++ +    +D K ++R+ +ESL+ +GA D     R  L   L  +
Sbjct: 804  AASAIQRRS---PFATIPELQRCLDGKIVHRKAVESLIKSGATDVLSPDRSGLYSCLKEL 860

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                    K        +F          +        N   R + E    GF+   HPL
Sbjct: 861  V------GKEDDGAQMTLFDISVNKPEKTVK-----PWNFFERTQCEFDAFGFFLFDHPL 909

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR----IGWVTFSE 1022
              Y+  L+    +               +A ++   + +   +G R    +   T ++
Sbjct: 910  FPYRKFLKLSPNQ---------------IAGVITELRIRS--RGDRKFAVMHVSTVND 950


>gi|313901726|ref|ZP_07835155.1| DNA polymerase III, alpha subunit [Thermaerobacter subterraneus DSM
            13965]
 gi|313468014|gb|EFR63499.1| DNA polymerase III, alpha subunit [Thermaerobacter subterraneus DSM
            13965]
          Length = 1162

 Score =  897 bits (2318), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/1091 (30%), Positives = 526/1091 (48%), Gaps = 93/1091 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  HS+YS L+GA  +  ++++ AA   PA+A+TD +N+  A+EF + A AAGI+PI
Sbjct: 2    FVHLHCHSAYSFLDGASPVQALVERAAALGMPALALTDHDNVAGAVEFDRAARAAGIKPI 61

Query: 71   IGCQLDIDMQDN----------------------------------------------LK 84
             G ++ + + +                                                 
Sbjct: 62   QGAEVTLLLDEPAGPAGVRPARPRPAAGAGPGGARPAGGGLGTGGKPGGGGPGGPGDAAP 121

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE------ 138
                   P P    +VLL +  +GY RL  L++R +L D+ + S  +  + L E      
Sbjct: 122  RPAAEGRPEPVTAHLVLLATGPQGYARLCRLLTRAHL-DRPRGSPALPWTVLLEEVAPGG 180

Query: 139  --IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH-RGYDR 194
              +   GLI L+G   GP+ +A        A +R    +  F  +  ++ LQ      +R
Sbjct: 181  EPLAGHGLIALSGCRQGPVLQALLRGDRATALERARQLRDAFGRENFFLELQGGWLPGNR 240

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHY 253
                 +  LA    + LVATN+  + + + +  HD+L  V     V +   +  +  D+ 
Sbjct: 241  ALNRALADLAEHLGVGLVATNDVHYATRDRFAVHDLLACVRLGIPVDEPHPQRHLNADND 300

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            LK+   M  +F+  P+ALE T+ IA RC+  L       P F            E  LR 
Sbjct: 301  LKSPRAMARMFAGYPQALEATLAIAERCAPALPEGGVPRPAFPLPPG----VRAEAYLRE 356

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            +   G   R        G      RQRL+ EL++I +++ + YFL+V D  ++A++  I 
Sbjct: 357  QVERGALWRY-------GRITPRIRQRLEHELSIIEKLQLADYFLLVWDVARYARQQGIR 409

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
               GRGS A S  AY L ITD+D +   LLFERFL+ +R   PD DIDF    RD+V  Y
Sbjct: 410  CA-GRGSAADSAVAYCLGITDVDAIERGLLFERFLSLERAEQPDIDIDFDARYRDQVADY 468

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            V+ +YG E VA + T+ +  A+ ALRD G+ L  P + +DR+ K +P   +  +  +A+A
Sbjct: 469  VEQRYGPEHVATVCTYQTYHARGALRDFGKVLGFPEAVIDRIAKRVPYYLSRQLG-RALA 527

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            +    R+  L    + RL+ + +   GL RH  TH  G+VI  RPLS L P+ R  +   
Sbjct: 528  EVPELRDLDLPRERLKRLVALCEAAAGLPRHMGTHLGGLVISRRPLSDLSPLQRSAK-GR 586

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
             + QF+ + +E+ GL+K D L L+TL  +++++  + +R    D   IP DD  TY LL 
Sbjct: 587  RILQFDKRGVEELGLVKLDLLSLRTLGAVEEAVRVIRRRNPSFDYDHIPLDDRATYRLLG 646

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKI 671
            T  T+G FQLES   R     ++P+ +ED++A V++ RPGPI  D +  +  R+ G+E +
Sbjct: 647  TGETVGAFQLESPAQRALQPRLRPENLEDVVASVAIIRPGPIKGDMVEPFLARRRGQEPV 706

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKE 730
              +HP ++P+L++T GV+++QEQV++IA  ++G++  EAD LRR M   +  EEM+    
Sbjct: 707  TYLHPKLEPILRKTWGVVLFQEQVIEIATAIAGFTPGEADRLRRVMTHARSPEEMEDIGR 766

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+  A + G+ + +A  IF ++  +A YGF ++HAAA+ V +Y+TA++  HYP E+ AA
Sbjct: 767  HFLRRARQQGVGEEVAQAIFRMIQGYASYGFCEAHAAAFGVTAYKTAYLLAHYPAEWYAA 826

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++L+            +A +  IQI+P  +NT  V F      I   L A+KG+G   A
Sbjct: 827  LLSLQPMGYYPPNTLGVEAARRGIQILPLDINTSQVAFTATPGTIRIGLRAVKGLGDEPA 886

Query: 851  RHIMEASA-DKPFDSLEDFCSRVDSKKL-------NRRVLESLVFAGALDCFGYSRMQLL 902
              I+       PF  L DF  R+ ++         +R  + +L+ AGA D    +R  LL
Sbjct: 887  AAIVAERERGGPFRHLMDFLLRLAARGGTAAGPVLDREQVAALIRAGAFDGLHANRRALL 946

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              LD     A+           ++       +S  +     +      ++  E+ VLG  
Sbjct: 947  WGLDEALATARQAA-----GGGDLAQGLAAAWSPPV----VADFPDLEKWAMEREVLGID 997

Query: 963  F-SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
                H L + + +L   G +          G  +R A + V   +  TR G  I ++T  
Sbjct: 998  VHRRHLLAMLREVLEARGYRPAAALRGLPPGVPVRAAGIPVRPHRPPTRSGRVIVFLTLE 1057

Query: 1022 EPAKEYEANFF 1032
            +     +   F
Sbjct: 1058 DETGLVDVTVF 1068


>gi|239946850|ref|ZP_04698603.1| DNA polymerase III, alpha subunit family [Rickettsia endosymbiont of
            Ixodes scapularis]
 gi|239921126|gb|EER21150.1| DNA polymerase III, alpha subunit family [Rickettsia endosymbiont of
            Ixodes scapularis]
          Length = 1245

 Score =  897 bits (2317), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1133 (36%), Positives = 620/1133 (54%), Gaps = 119/1133 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++  ++++  AI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELASSNKMSAICLADKGNLFGSLEFALYAVKKGLQ 62

Query: 69   PIIGC----------QLDIDMQDNLKMTNQGKT--------------------PFPTVPS 98
            PI G                 QD  K     +T                           
Sbjct: 63   PIHGVILNIKYNIQHHSASFRQDEFKSKPAERTKVREQRLDSKNSLVSSLLNDAGDIFAQ 122

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I+L+     GY+ L++L S  +  +  K    I    L E   EGLI L   + G + + 
Sbjct: 123  ILLIAKDETGYKNLLKLSSLTFTKNDRKICDHIDFEDLIEY-QEGLIALCCYTDGIVGKC 181

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNS 217
                + + A       +++ GDR Y  + RH    +++ E   +++A    +PLVATN  
Sbjct: 182  LLARNEEQAMLFARKLQEILGDRFYFEIMRHDLPEEQFIEDSYIRIAAELAIPLVATNKV 241

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            LF  +  ++AHDVL+ ++        DR  V+ + Y ++  EM+ +FSDLP A++NTV +
Sbjct: 242  LFSEKSMHDAHDVLLCISAGVTKEYPDRKTVSENCYFRSPHEMIELFSDLPSAIQNTVNL 301

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ-- 335
              RC F    + P+LP F  K+       E + +R  A  GL  RLA    ++    +  
Sbjct: 302  RERCYFAAHANPPMLPNFATKDI-----SETDLIRKDAKEGLLARLATKFKSENISLENQ 356

Query: 336  -----DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                 +Y  RL++EL++I  M F+GYFLIV+DFI+W+KK  I VGPGRGSGAGSV A++L
Sbjct: 357  EELKTEYFARLNYELDIICNMNFAGYFLIVSDFIKWSKKEGILVGPGRGSGAGSVVAWSL 416

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             ITD+DP++F LLFERFLNP+R+SMPDFDIDFCQ+RR+EVI YV++KYG  RV QIITFG
Sbjct: 417  LITDLDPIKFGLLFERFLNPERISMPDFDIDFCQERREEVINYVRSKYGDNRVGQIITFG 476

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLAD---- 505
             +QAKA ++DV R L +PY   D L +L+P    +PVSL QAI +      A   +    
Sbjct: 477  KMQAKAVIKDVARVLSLPYKFADYLTELVPFSAVNPVSLEQAIREVPELANAAKGNGLYN 536

Query: 506  -----PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
                   +  +L+ S  LEGL+RH+STHAAGIVI    L  +VP+Y+D  SD+ V  ++M
Sbjct: 537  LEGEAELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVPVYKDANSDMLVVGYSM 596

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
            K+ E AGLIKFDFLGL+TLT++      L ++G++VD + + FDD++TY +L     +G+
Sbjct: 597  KYSEIAGLIKFDFLGLQTLTVITDCKKLLKEQGIEVDFNNMTFDDNKTYQMLCKGKGVGV 656

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ ES GM+ AL  ++PD I D+IAL +LYRPGP++NI  Y   K+  ++   +H L+ P
Sbjct: 657  FQFESIGMKDALRRLKPDSIHDLIALGALYRPGPMENIPTYIACKHKLQQPDYLHELLKP 716

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +L+ET GV+IYQEQV +IAQ+L+GY+L  AD+LRRAMGKKIK+EM++Q+E F+ GA  N 
Sbjct: 717  ILEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRAMGKKIKKEMEEQEEIFVKGAIANN 776

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            IS++ A +IF  +AKFA YGFNK+HAAAY VISYQTA++K +YP EFL A + LE++N +
Sbjct: 777  ISESQAKSIFATVAKFAGYGFNKAHAAAYGVISYQTAYLKANYPAEFLVACLNLELNNHD 836

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----------------------------- 831
            KI  F Q+A+   I+I+ P++N     F V                              
Sbjct: 837  KINLFLQEAKDNGIKIIAPNINISEGYFSVKSSDTVIPRAATCHPQGSLCHPRESGDPEK 896

Query: 832  ----------DNRIYYSLAAIKGVGTTTAR-HIM-------------------EASADKP 861
                           +    I+G+G       I+                   E  A   
Sbjct: 897  LETALNHKSMKMDSRFRGNDIEGIGYDKEENAIIFALGAIKGVTPNFGKLVTDERKARGM 956

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QL  S+  +  Y+    + + +
Sbjct: 957  FKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLFSSISKLLSYSTSYHEEQGS 1016

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
               ++   +  T S  I +     + +++ F  E   +G + S HPL  Y+ I  ++ I 
Sbjct: 1017 NQFSL--IKVSTLSPTILVSSDYADKNTLAF-YEFEAMGLFISNHPLMQYQEIFSRLNIL 1073

Query: 982  GYEESV-ATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +       G N + LA ++  K  + + +G R   +  S+P   +E + F
Sbjct: 1074 NTADLQNNLPEGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSIF 1125


>gi|309775411|ref|ZP_07670414.1| DNA polymerase III, alpha subunit [Erysipelotrichaceae bacterium
            3_1_53]
 gi|308916800|gb|EFP62537.1| DNA polymerase III, alpha subunit [Erysipelotrichaceae bacterium
            3_1_53]
          Length = 1026

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1025 (34%), Positives = 576/1025 (56%), Gaps = 43/1025 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL V S Y+LL+  L++  I          A+A+TD + +  A+ F        I+PI 
Sbjct: 3    VHLHVRSCYTLLQSTLTVAKIAAAAKRCGYTAVALTDKHVMHGAMAFYHACKKEQIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++D+  +D+             V   VLL     GYQ L++L + +   ++ +    +
Sbjct: 63   GMEVDVLEKDD-------------VYGFVLLAKNDHGYQNLMKLSTWLNTGEETR---TL 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
             L  L     +  I++T G    ++         +    L   +  F D  YV + R+  
Sbjct: 107  DLDTLAFYA-KDCIVITNGDQNQMETLIVKEELDLLRHWLKVCQAQFAD-FYVAVSRNDS 164

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G  + +   + QL     +P  A +   F   ED E++  L A+     +  K     +P
Sbjct: 165  GLMQKKNPVLKQLCKELGIPYTALSRVYFEYAEDEESYKTLCAIDQGVSLQDK-MLNYSP 223

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              Y ++ +EM +++ D  E L  +  IA  C+  +     +LP+F  K         E  
Sbjct: 224  RRYFRSPAEMQALYED--EELAMSDHIAAMCNVEMSFPKAVLPKFHNKYG----VSSEEF 277

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR+    GL+ R+    I     +  Y+QRLD+EL+VI RM+++ YFLIV DFI++AK  
Sbjct: 278  LRSLCQKGLQKRMQFQTI-----SDVYQQRLDYELDVIIRMQYADYFLIVWDFIRFAKTQ 332

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I +GPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D DF  +RRDEV
Sbjct: 333  HIYIGPGRGSAAGSLVAYCLGITHVDPIRYHLLFERFLNPERISMPDIDTDFPDNRRDEV 392

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV+  YG  RV+ IITF +L AK  LRDVG+A+++   Q+DRLCKL+PN     +   
Sbjct: 393  IRYVEELYGKHRVSHIITFNTLAAKQVLRDVGKAMEINPRQIDRLCKLVPNVLKATLDF- 451

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  ++ RF+E      ++ RL  +++KLEGL RHAS HAAGIV  +  + Q+ P+  DV 
Sbjct: 452  AYHNEPRFKEIINNGETMGRLYAVARKLEGLPRHASLHAAGIVFSNEDIEQVCPLI-DVD 510

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
              +  TQF M+++E+ GLIK DFLGL+ LT++ + +  + A    K+D+  IP DD +TY
Sbjct: 511  EGVCATQFTMEYLEELGLIKMDFLGLRNLTIIDEIVQHINAASDQKLDIMHIPLDDPKTY 570

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L+    T+G+FQLES GM+  +  MQP   EDI+A ++L+RPGP++NI  Y +R+   E
Sbjct: 571  ALIRAVDTVGVFQLESEGMKNLIRKMQPKSFEDIVATIALFRPGPMENIPEYLDRRAHPE 630

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  IHP + P+L+ T G++IYQEQ+MQ+AQ ++G++L +AD LR+A+ KK  +E+ K +
Sbjct: 631  KVDYIHPSLQPILQNTYGIMIYQEQIMQVAQTMAGFTLGKADNLRKAISKKKGDELQKMR 690

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E FI GA + G ++ +A  ++ L+ KFA+YGFN+SH+ AY +I+YQ A++K + P+ F  
Sbjct: 691  EEFIQGALQKGYTEALAQRVYALIMKFANYGFNRSHSVAYGMIAYQLAYLKANAPLYFFN 750

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            + +   + +  K  ++  +AR+  IQI+ P VN  C  + + +N + +    IKG+G+  
Sbjct: 751  SLLNSVIGSETKTSEYVFEARKRRIQILLPDVNRSCNQYVIEENALRFPFVGIKGIGSAV 810

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            +  I+E       F    DF +R++  K+ ++ +E L++AGALDCF ++R  L+ SLD+ 
Sbjct: 811  SSQIVEERKKKGQFRDFFDFTARMNGNKIGKKTIEILIYAGALDCFKFARASLMASLDDA 870

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +YA  V+    ++   +F  +  +      ++     N+++R E E+  +GFY S HP+
Sbjct: 871  LRYADLVKIEDVDQV--LFDFDLVSKPAMTVVKD----NAAIRAEKEKEAIGFYLSRHPI 924

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
               +  + +        S+   +G  ++   ++   +Q +T+ G  + +V  S+   +++
Sbjct: 925  ADVRSKMGRE--LPVLVSLPKHKGRYVKFVCLIDRCRQYRTKNGDMMMFVVGSDETGKFD 982

Query: 1029 ANFFP 1033
                P
Sbjct: 983  LVCMP 987


>gi|261749409|ref|YP_003257094.1| bifunctional DNA polymerase III subunit alpha/DNA polymerase III,
            epsilon subunit [Blattabacterium sp. (Periplaneta
            americana) str. BPLAN]
 gi|261497501|gb|ACX83951.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase III,
            epsilon subunit (dnaQ) fusion protein [Blattabacterium
            sp. (Periplaneta americana) str. BPLAN]
          Length = 1435

 Score =  892 bits (2306), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/1069 (31%), Positives = 552/1069 (51%), Gaps = 66/1069 (6%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG------ 66
            H+  H+S+S+L   + + +++++      PA+ ITD  N+  A  F     +A       
Sbjct: 251  HIHNHTSFSILYSTIDIQSLIERAIYFDMPAVGITDYGNMMGAFHFLNAIHSANKKYSSL 310

Query: 67   ---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
               I+ I+GC++ I   D        K         V L     GYQ L +L S  ++  
Sbjct: 311  KKYIKGIVGCEVFIS--DFYSQKKFTKEQPDKRYHQVFLSKNKAGYQNLSKLCSHGFIEG 368

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  R+    +++   + LI LTG     I +         AEK  L +K+LF +  Y
Sbjct: 369  FYAGVPRVGKDLIEKY-KKNLIALTGDLYAEIPQTILNKGKIKAEKVFLWWKELFEEDFY 427

Query: 184  VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L RH   +  Y    +++ +  + +  +  NN+ +L  ++  AHD+L+ V +    S 
Sbjct: 428  IELLRHGLEEEDYVNKVLLKFSEKYHVKYIVQNNTFYLDPKESYAHDILLCVKNGEKKST 487

Query: 243  K-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                           + Y K+  EM  IFSD PE+ +   E+  +          +LP+F
Sbjct: 488  PIGRGRGYRFGFPNHEFYFKSPEEMKEIFSDFPESFDFLEELVNKVESYHLSQKVLLPKF 547

Query: 296  IEKE--------CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
               E         D   + E + LR+ A  G + R             + ++R+ FEL  
Sbjct: 548  KIPESFENSLDKIDGGHRGENSFLRSLAYEGAKKRYPHM-------TPEIQERIHFELKT 600

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I ++ + GYFLIV +FI  AKK NI VGPGRGS AGSV AY + ITDIDP++++LLFERF
Sbjct: 601  IEKIGYPGYFLIVQNFISQAKKMNISVGPGRGSVAGSVVAYCIGITDIDPIKYNLLFERF 660

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNPDR+S+PD DIDF    R+++I +V  KYG  +VAQIIT+ ++ AK+A+RD  R L +
Sbjct: 661  LNPDRISLPDIDIDFDDKGREKIIEWVVQKYGKNQVAQIITYATMGAKSAIRDTARVLDL 720

Query: 468  PYSQVDRLCKLIPNDPAH------------PVSLQAIADDSRFREARLADPSVD-RLLEI 514
               + D L K++PN  +              +S + + +  + +       +++ ++L+ 
Sbjct: 721  SLKKTDYLAKMVPNLLSLKILLSKKDHLLEKMSKEDMENVKKLKSISEKKDTLEGQVLQQ 780

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++ LEG  R    HA GI+I    + + VP+     SDL +TQF+   +E+AGL+K DFL
Sbjct: 781  AKILEGSIRSTGIHACGIIISSYDIKEYVPVSISKESDLLITQFDNHVVEQAGLLKMDFL 840

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            GLKTLT++++ L+ + +R     +S  P +D +TY L     T+ +FQ ES GM++ L  
Sbjct: 841  GLKTLTIIKEVLNIIKKRINVEKIS-FPLEDIKTYSLFQKGETVAVFQYESPGMQKYLRL 899

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
            ++PD  +D+IA+ +LYRPGP+  +  +  RK+GKE I    P ++  LKET G+ IYQEQ
Sbjct: 900  LKPDKFDDLIAMNALYRPGPLQYLTNFIYRKHGKEAITYDLPEMEEFLKETYGITIYQEQ 959

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VM IAQ ++G+S  E D LR+AMGKK KE ++K K +FI  AS+ G  K I   I++   
Sbjct: 960  VMLIAQKIAGFSKGETDFLRKAMGKKQKEVLNKMKNQFIIQASRKGYPKKILEKIWKDWE 1019

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+ Y FNKSHA  YA I++QTA++K H+P E++A+ ++  MDN++++  F ++ ++  I
Sbjct: 1020 YFSCYAFNKSHATCYAYIAFQTAYLKAHFPSEYMASVLSHNMDNIKQLTYFIKECKRMGI 1079

Query: 815  QIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV 872
             ++ P +N     FKV   N I + +  IKGVG    ++I++   +  P+ S+ D   R+
Sbjct: 1080 SVIGPDINESDAFFKVTDSNCIRFGMRGIKGVGENAVKNIIQERENHGPYTSIFDLVKRI 1139

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQ--------SLDNIQKYAQWVEKNRTNKHE 924
            D + +N++ LESLV +G+LD F   R Q           +L+ I ++    +K +    E
Sbjct: 1140 DLRIVNKKTLESLVLSGSLDKFHIHREQYFHFEEEKKLSTLEKIIRFGSKFQKRKM--QE 1197

Query: 925  NIFAHEKGTFS-DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
              F  +K     +K  + K    N+  +   E+ VLG Y S HPLD Y    +       
Sbjct: 1198 KNFPKKKKKIEVEKPMIIKSEPWNNIYKLSKEKEVLGLYASSHPLDDYSYERKYFTNLSL 1257

Query: 984  EESVATIR---GNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAKEYE 1028
            ++     +   G  I +  ++    ++   + G + G     +     E
Sbjct: 1258 DQLNKNEQKLIGKEIYICGILSKIEKKIYIKSGKKYGIFLLEDYHSSKE 1306


>gi|23099632|ref|NP_693098.1| DNA polymerase III alpha subunit [Oceanobacillus iheyensis HTE831]
 gi|22777862|dbj|BAC14133.1| DNA polymerase III (alpha subunit) [Oceanobacillus iheyensis HTE831]
          Length = 1106

 Score =  889 bits (2298), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/1028 (33%), Positives = 539/1028 (52%), Gaps = 50/1028 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL + S YSL+E  +++  ++DK   ++Q A+A+TD   L+ A+ F +     GI+P
Sbjct: 2    SFTHLYIKSGYSLMESTITIPKLIDKAKQERQEALALTDIGVLYGAISFYKACIDNGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  + +                      VLL     GYQ LI L + + +        
Sbjct: 62   IIGLTVMVK-----------DEQLNETVPCVLLAKNNNGYQNLISLSTNININGNE---- 106

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             +  S L     + + +L      P+        ++       ++  LF  D  Y+ + R
Sbjct: 107  EVEKSLLDNYTDDIVGIL------PVTTGMEKVFTEELGTYFSSWSNLFSDDDFYIGVDR 160

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            H         +V+Q   +  +PL +     +L E D+ A+D L A+ +       +    
Sbjct: 161  HSL-------EVIQSLQSLSIPLTSIQEVRYLHENDHIAYDCLQAIRYGEKWDGTEINSK 213

Query: 249  TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +     EM  +F  + PEAL NT  I  +C+  + ++   +P F            
Sbjct: 214  NKQLHFTTEKEMEDLFQYIAPEALANTERIKDKCNLEINMNERYIPSFPVPN----SLTA 269

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++ L+   ++ +E R  +              RL++EL VI  M +S YFLIVADFIQ+A
Sbjct: 270  DSYLQQLCISKIEERYKE-------RNDQIMNRLNYELEVIQSMNYSDYFLIVADFIQYA 322

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N I VGPGRGS AGS+ AY L IT++DPL ++LLFERFLNP+R+SMPD D+DF   RR
Sbjct: 323  KDNQIAVGPGRGSSAGSIVAYLLGITEVDPLEYNLLFERFLNPERLSMPDIDVDFSDVRR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV+ KYG + VAQIITFG+  A++ LR++ + L +    ++ + K IP      +
Sbjct: 383  DEVIDYVREKYGQDHVAQIITFGTFAARSVLRELMKTLDVHEMDMNYVMKEIPTQSNRSL 442

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            +   + +    +        +  L  I+ KLEG+ R+ STHAAG+VI ++ L+  VP+  
Sbjct: 443  T-DILKEKEELKAYVKQSSRLKLLFSIAVKLEGIPRNVSTHAAGVVISEKKLTNHVPLTI 501

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDH 606
                   +TQ+ M  +E  GL+K DFLGL+ L+L++K    +   R   + L+ IP  D 
Sbjct: 502  GTN-QTYLTQYAMGELETIGLLKMDFLGLRNLSLIEKVNTAITNSRHRSLQLAEIPEQDE 560

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T+ LL    T G+FQLES GM++ L+ + P   EDI+A+ +LYRPGP+D I  Y  RK 
Sbjct: 561  ATFQLLRKGHTNGVFQLESDGMKKVLQELMPSTFEDIVAVNALYRPGPMDFIPTYIRRKK 620

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E +   HP + P+L +T GV+IYQEQ+MQIA +++G++L EAD+LRRA+ KK + +M 
Sbjct: 621  NVEPVSYPHPDLKPILSKTYGVLIYQEQIMQIANVIAGFTLGEADILRRAVSKKKESDMY 680

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            KQK+ FI G    G  K +A  IF  + +FA+YGF +SHA AY+ ISYQ A+MK HYP  
Sbjct: 681  KQKQAFIDGCINRGYKKEVADEIFSWIVRFANYGFPRSHAVAYSKISYQLAYMKAHYPNA 740

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F A  ++   +  EKI  + Q+ ++ N  I+PP +N     + V    I   L+AIKG+G
Sbjct: 741  FYAELISGVRNQQEKINTYIQEFKKLNGNILPPDINKSYGKYAVERKDIRMGLSAIKGIG 800

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                + I++A  D  F +  DFC RV+ K ++R ++E+LV  G  D    +R  LL S+D
Sbjct: 801  IQPIQEILQARKDGTFKNFFDFCMRVNLKIVSRTIIENLVLVGVFDSIYRNRASLLASID 860

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
               +  +  ++       ++F  +         +E F+      +  +E+ +LGFY S H
Sbjct: 861  QAIEQKELFKEFLD--QPSLFQDQIEMVESYTEIEDFT---KIKKLSDEKELLGFYVSSH 915

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            PL  Y+  LR  G      +   +    +     +V + +  +T++G R+ ++T S+   
Sbjct: 916  PLKEYRKKLRSAGNITLSHAKKLVNTRKVIHAVVIVDAMKVIRTKRGDRMAFLTISDEEL 975

Query: 1026 EYEANFFP 1033
            E +A  FP
Sbjct: 976  EIDAVLFP 983


>gi|323142803|ref|ZP_08077516.1| DNA polymerase III, alpha subunit [Succinatimonas hippei YIT 12066]
 gi|322417448|gb|EFY08069.1| DNA polymerase III, alpha subunit [Succinatimonas hippei YIT 12066]
          Length = 1206

 Score =  887 bits (2292), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1055 (37%), Positives = 584/1055 (55%), Gaps = 62/1055 (5%)

Query: 23   LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
            ++G  S+  I+ + AA + PA+AITD +N+   ++F     +AGI+PI+G  ++++ +  
Sbjct: 1    MDGLESVGAIVKRAAALKIPALAITDISNICGFIKFYTACKSAGIKPIMGADIEVEEE-- 58

Query: 83   LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRICLSWLQEIGT 141
                  G+    T   + LL     G Q L +++S  +L  D G  + +  L+ L++  +
Sbjct: 59   ---VKPGEK--ATSFKLTLLAMDRVGQQNLYDILSDAWLRSDAGAFNAKTSLADLKKY-S 112

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EG+I+L G   G I        S+    RL  + + F DR    + R +R  +   E+  
Sbjct: 113  EGIIILDGFR-GDIAAMAQRKDSKAIRARLKFYLENFNDRFCFEITRTNRIGESEFENFA 171

Query: 201  VQLAYTHELPLVATNNSLFLS---------EEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250
            + L   + +  VATN+++FL            DY+ HDV +++        K+  R  + 
Sbjct: 172  LNLCVEYNIAPVATNDTVFLFGEDNVGKDGFSDYQIHDVRVSIQAGCQRGNKEMARKYSK 231

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            + YLK   +M ++F+D+PEAL+NT  IA RC+  +++  P LPR+   +           
Sbjct: 232  EQYLKTPEQMEALFADIPEALQNTRNIAERCNIEIELDHPRLPRYPTGDL-----SPAEY 286

Query: 311  LRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            LR KA  GLE RL         +    Q Y  RL+ EL+VI  M F GYFLIV +FIQW+
Sbjct: 287  LRKKAAEGLEERLEFLYPDEKERNEKRQTYVDRLNTELDVIINMDFPGYFLIVMEFIQWS 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K++ +PVGPGRGSG GS+ AY+L ITD DPLRF LLFERFLNP+R+SMPDFD+DFCQ  R
Sbjct: 347  KEHGVPVGPGRGSGGGSLVAYSLKITDFDPLRFDLLFERFLNPERISMPDFDVDFCQRNR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA--- 484
            ++ + +V+N+YG+  V+QI TFG++  KAA++D GRAL M Y  VD + K +P  P    
Sbjct: 407  EKTLEHVKNRYGNNAVSQIATFGTMAPKAAIKDAGRALGMGYGAVDFVAKQLPTQPGLTF 466

Query: 485  ---HPVSLQAIADDS------RFREARLADPSVDR--LLEISQKLEGLYRHASTHAAGIV 533
                 +       D          +  L D    R  L+ I+ +LEG+ R+   HAAG+V
Sbjct: 467  KAAMGIGKDGKPCDPLAPDFVNLYQKALQDDDRQRVELIHIALRLEGVIRNIGKHAAGVV 526

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL---- 589
            I     ++  P+  D   +  +TQF+ K +E AGL+KFDFLGL TLT++  +L  +    
Sbjct: 527  ISPTRTAEFSPLMLDSDGN-SITQFDKKDVEHAGLVKFDFLGLTTLTIIDDALTMINARK 585

Query: 590  -AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
                   V++  +P++D E++ +L    T  +FQLES+GMR+ +  MQPD  +D+IALV+
Sbjct: 586  AKHHEPPVNIHAVPYEDPESFAVLQQCETTAVFQLESAGMRKLIGQMQPDRFDDLIALVA 645

Query: 649  LYRPGPIDNIV--VYNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQL 701
            LYRPGPI + +   +  RK+GKE++    P      + P+L  T GVI+YQEQVMQIAQ+
Sbjct: 646  LYRPGPIKSGMVDHFVQRKHGKEEVAYPSPDFQDLDLKPILDSTYGVIVYQEQVMQIAQV 705

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            L+GYSL  AD+LRRAMGKK   EM  Q+  F  GA K G    IA+ IF+ + KFA+YGF
Sbjct: 706  LAGYSLGGADILRRAMGKKNPAEMAGQRSVFKEGAGKKGKDTDIAMKIFDQVEKFAEYGF 765

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NKSH+AAYA++++ T W+KTHYP EFLAA MT +   VEK+  +  +  +  I++ PP V
Sbjct: 766  NKSHSAAYALVAWWTLWLKTHYPAEFLAAMMTADRQRVEKLVSYIAECNRLKIKVNPPDV 825

Query: 822  NTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                 +F V D   I Y + A+KG+G      I++  A KPF    DF  RV  K LNRR
Sbjct: 826  TEGLFNFTVNDAGEIIYGIGAVKGIGEDVVEDIIKERAQKPFKDFFDFVKRVGPKHLNRR 885

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
              E+LV +GALD  G SR Q++ S+    KYA     +  +   ++FA    + +   T 
Sbjct: 886  TFEALVASGALDKLGPSRAQMMASIPTAMKYAVQESSDAASGQLDLFA--AISETTAPTF 943

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRGNNIRLA 998
                  +   R   E+ VLG Y SGHP+++Y   L +               R N +   
Sbjct: 944  VACRPWSEKYRLYLEKNVLGLYLSGHPINIYIDELTRNYRSTISTLRPGTAQRPNPVTFY 1003

Query: 999  AMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
             +V+S  ++ ++  GS+   +   +   + E + +
Sbjct: 1004 GIVISSTERTSKNDGSKFYILILDDGTSQLEFSLY 1038


>gi|312869124|ref|ZP_07729298.1| DNA polymerase III, alpha subunit [Lactobacillus oris PB013-T2-3]
 gi|311095370|gb|EFQ53640.1| DNA polymerase III, alpha subunit [Lactobacillus oris PB013-T2-3]
          Length = 1113

 Score =  887 bits (2291), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/1029 (33%), Positives = 551/1029 (53%), Gaps = 50/1029 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++V L+VHSSYSLL+    + +++         A+A+TD N L+ A++F   A  AGI+P
Sbjct: 2    NYVPLEVHSSYSLLQSPTRIPDLVKAAKQRGYTALALTDQNILYGAVDFYNTARQAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++           L++T        +   + LL    +GY+ L+++ +R    ++GK   
Sbjct: 62   LL----------GLEITVALDELAGSQLKMTLLAKNEQGYRNLMDISTRQQTAERGK--- 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I  + L  +  E +++L      P+  A   N  +     L + ++  G  LY+ +  +
Sbjct: 109  TITFTELAGLLKEVVVIL------PVQLAVL-NLIRQGTGWLTSLQQTVGRNLYLGI--N 159

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRV 248
               D    S + + A    +P+VAT    +L+  D  A   L A+     ++  D +   
Sbjct: 160  LQLDEVERSSLQRFAQEAGVPIVATTPVDYLNATDLFATKTLQAIGQGAQLTDLDAQATA 219

Query: 249  TPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            T D+YL  R ++ + +  L    A++NT  IA +C+  L+  AP+LP +     +     
Sbjct: 220  TGDNYLPVRQQVEAAYHQLGLAAAVDNTAVIADQCNVELKFQAPVLPHYQTPHGE----T 275

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR   +AGL+ R     +A GY A  YRQRLD EL +I RM F  YFLIV D + +
Sbjct: 276  AVDYLRQLCLAGLKKR----PLAAGYSATAYRQRLDHELAIIHRMGFDDYFLIVWDVMNF 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I   PGRGS AGS+ AYAL IT++DPL + LLFERFLNP+R  MPD D+D   +R
Sbjct: 332  AHRTKITTDPGRGSAAGSLVAYALAITEVDPLEYQLLFERFLNPERAQMPDIDLDIPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ YV  KYGHERVAQIITFG+L AK  LRDV R  ++   +   L   +P   +  
Sbjct: 392  REEVLAYVHRKYGHERVAQIITFGTLAAKQVLRDVSRVFKLTKFETTTLLDALPRGGSFT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  QA+A+  R +      P + +L +++++LEGL RH STHAAGIV+   PL ++VP+ 
Sbjct: 452  LD-QALAESQRLKNLLNDQPKLRQLFQVARQLEGLPRHYSTHAAGIVLSAAPLHEIVPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                  L +TQF    +E  GL+K DFLGL+ L+++  +L  + Q+  +  L  +   D 
Sbjct: 511  -AGSEGLLMTQFPKDTVEALGLLKMDFLGLRNLSIMDNTLRMIRQQEPQFSLERVSLADP 569

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T G+FQ ES+G+R  L  + PD  EDI+A+ +LYRPGP++NI  +  RK 
Sbjct: 570  ATLQLFQRGQTDGVFQFESAGIRNVLTALHPDHFEDIVAVNALYRPGPLENISHFIARKQ 629

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E +      + P+L  T G+++YQEQVMQ+A  ++G++L EAD+LRRAM KK K+ MD
Sbjct: 630  GQEPVRLPDQSLAPILAPTYGILVYQEQVMQLASAMAGFTLGEADLLRRAMSKKKKQTMD 689

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              + +F++GA   G    +A  +F+ + +FA+YGFN+SHA AY+ ++++ A++K HYP E
Sbjct: 690  NMRAKFMAGARAKGYQSALASQVFDYIDQFANYGFNRSHAVAYSKMAFEMAYLKCHYPTE 749

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  A +  E  N+ K+++   +A++  ++I  P +N     F V D +IY+ L AIKG  
Sbjct: 750  FYTALLNAE-GNITKLRQHVTNAQRMGVKINGPRINLSRAQFTVHDQQIYFGLTAIKGGR 808

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  +++   ++  F  + D   R+  K     VL  L++AGALD  GY+R ++++SL
Sbjct: 809  RDFIADLLQERDSNGSFKDIRDLIHRLPDKWQKEEVLTPLIYAGALDGLGYNRAEMIESL 868

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             N+    + +                G  S + ++        + R   E  +LG Y SG
Sbjct: 869  PNLLSGIELLAT---------LPGLSGDPSLQSSISHRQEYPLTTRLAKENELLGVYLSG 919

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPA 1024
            HP+  Y+ +  ++      +         + L   +   +   T+K  R + +++ S+ +
Sbjct: 920  HPVSQYRQLASRLRAGRVADL---RPNQRVTLILFINRVKVIHTKKDHRPMAFISGSDES 976

Query: 1025 KEYEANFFP 1033
               +   FP
Sbjct: 977  GLLDVTVFP 985


>gi|288553705|ref|YP_003425640.1| DNA polymerase III subunit alpha [Bacillus pseudofirmus OF4]
 gi|288544865|gb|ADC48748.1| DNA polymerase III alpha subunit [Bacillus pseudofirmus OF4]
          Length = 1117

 Score =  885 bits (2288), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1028 (35%), Positives = 579/1028 (56%), Gaps = 41/1028 (3%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            H  V+S YSLL     +  ++ K       A+A+TD  N+F+A+ F +     GI+P+IG
Sbjct: 5    HTNVYSEYSLLSSTNRIKELVSKAKETGFTALALTDKGNMFAAVPFYKACLETGIKPVIG 64

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             ++ I   ++               S+ LL     GY+ L+++ + +   D  +    + 
Sbjct: 65   LEIPIKDNEHSG-------------SLRLLAKNTTGYKSLLKISTLLQTEDNLR--AGLA 109

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-KLFGDRLYVNLQRHRG 191
               L+    + LI++      P+ +       + A++  + +  +   +  Y++L  +  
Sbjct: 110  PDDLRSRINDCLIII--PYDSPMHQLIKAGEVEAAKEWCVRWITRSKKEDWYIDLAGNAD 167

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             + +    V Q A  + L L  +N   F S+E+YEA+  + A+     +  +D       
Sbjct: 168  RESHHWEAVSQFASRYNLKLCGSNPVRFTSKENYEAYAAVRAIREGKTIHLQDEGHAERS 227

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             YLK++ E+   FS +P AL    EI  +C+  + +    LP +   + +  ++     L
Sbjct: 228  FYLKSKEELKQSFSPVPAALSGLGEIVEQCNITIDLDRRYLPAYPFTKSEPAKEV----L 283

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            +   + G   R             + R+RL+ EL VI +M F+ YFLIVADF+Q A+K N
Sbjct: 284  KKACLEGANKRF------NHTITDEVRRRLEKELAVIDQMGFNDYFLIVADFMQHARKRN 337

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            +  GPGRGS AGS+TAY L ITD++PL++ LLFERFLNP+R+S+PD DIDF   RRDEVI
Sbjct: 338  MMTGPGRGSAAGSLTAYVLYITDVNPLKYDLLFERFLNPERISLPDIDIDFPDHRRDEVI 397

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ KYG + VAQI TFG+L A+AA+RD G+AL      ++++ KLIP+ P   +  +A
Sbjct: 398  QYVQEKYGPDHVAQIATFGTLAARAAIRDTGKALSCDSFLIEKVAKLIPSTPGITIK-KA 456

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
            +  +   ++ R      ++LL I++ +EGL RH STHAAG+VI   PL++LV + +  + 
Sbjct: 457  MEQERGLQQIRNDSEDANKLLSIAESIEGLMRHVSTHAAGVVISPVPLTELVALQKG-QG 515

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYH 610
             + +TQ  M  +E  GL+KFDFLGL+ LTLL++ L  + Q    +VD+  IP+DD +TY 
Sbjct: 516  PVRLTQATMGIVEDIGLVKFDFLGLRNLTLLERVLSIIEQESGRRVDIHSIPWDDVKTYE 575

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL    T G+FQLES GMR+ L  + P   EDI+A+ +LYRPGP+D I VY N K+ K  
Sbjct: 576  LLANGDTTGVFQLESQGMRRVLRSLMPTEFEDIVAVNALYRPGPMDYIQVYINGKHKKAP 635

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I  IH  + P+L +T GVI+YQEQ+MQIA  ++G+SL+ AD+LRRA+ KK K +++K + 
Sbjct: 636  INDIHEELTPILGKTYGVIVYQEQIMQIAVKMAGFSLARADLLRRAISKKNKADLEKSRG 695

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ GA + G ++ IA  +F+L+ +FA+YGFN+SHA AY++ISYQ A++K H+P  F  A
Sbjct: 696  DFLKGAKEKGYNEDIANKVFQLIERFANYGFNRSHAVAYSMISYQLAYLKAHFPTAFYTA 755

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVGTT 848
             ++   +  EK+ +  Q+ ++  I IMPPS++   + F + D+   + + L  +  VG  
Sbjct: 756  LLSSVWNTPEKLTELLQETKKRKIDIMPPSISKSGLLFTLEDHGHTVRFGLLPVSHVGVQ 815

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A+HI++ + + P+  L D+C RV+ + +NRR  E+L+ AGA+D +G  R  LL +LD  
Sbjct: 816  AAKHIIDTAREAPYKDLFDYCVRVNQRIVNRRATENLIKAGAMDEWGEDRATLLYNLDQA 875

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +A+ V   + ++   +F  +     +    E     +   +   EQ  LG Y SGHP+
Sbjct: 876  YSFAEKVLSFQ-DEMAGLFTLD----IETPQYEHVDPLSLQEKLSFEQEALGVYVSGHPI 930

Query: 969  DVYKPILRKMGIKGYEESVATIRGN---NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            +    +L K       + +   +G     +R+A MV S ++  T+KG  + ++  ++ + 
Sbjct: 931  EQVSDVLAKYQRVLIADMIQDQKGQERKRLRIAGMVSSLKKITTKKGDPMAFLEAADESG 990

Query: 1026 EYEANFFP 1033
              E   FP
Sbjct: 991  HCEVVVFP 998


>gi|199598719|ref|ZP_03212133.1| DNA polymerase III, alpha subunit [Lactobacillus rhamnosus HN001]
 gi|199590407|gb|EDY98499.1| DNA polymerase III, alpha subunit [Lactobacillus rhamnosus HN001]
          Length = 1098

 Score =  885 bits (2286), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/1028 (32%), Positives = 521/1028 (50%), Gaps = 59/1028 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L +++         A+A+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALPDLIQAAKNRGYSAVALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q++I                     ++++     GY +L++L +++ L  Q     
Sbjct: 62   LLGMQIEIAD-----------------AKLLVIAENNTGYHQLLKLSTQIMLAQQ----- 99

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               L++   +   GL  +T  +S P   A        A+  L T K      LY+ +   
Sbjct: 100  --PLAFADLLPLNGLAAVTLPNS-PFGVAVSERHEDQAQTFLTTLKAKQPSSLYLGV--- 153

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
               + + E  +   A T +LPL+A  N L+    D     V++A+   + ++ +D     
Sbjct: 154  --DEEHLEGTLPAFADTVKLPLLALGNVLYRDPTDAFTQKVMVAIEAGSQLNFRDPVLTD 211

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +LK  ++    F  + L  A+  T  IA R    +    P LP +   +    Q  
Sbjct: 212  AGPAWLKPPTDAAKPFVQAGLQAAVTQTEAIAARADVTIDFKQPQLPHYQTPD----QTP 267

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ L   A +GL  R    +I        Y+ RL++EL VI  M F+ YFL+V D + +
Sbjct: 268  SKDYLTKLAESGLAKRFHGQSI-----PPAYQDRLEYELRVIIEMGFADYFLVVWDVMNY 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K NI  G GRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D+D   +R
Sbjct: 323  AHKVNIMTGAGRGSAAGSLVSYALAITEVDPIEYNLLFERFLNPARAQMPDIDLDIPDNR 382

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E+I+YV +KYG   +AQIITFG+  AK A+RDV R   +   + +   K IPN     
Sbjct: 383  RGELIQYVHDKYGKNHMAQIITFGTFGAKQAIRDVARVFGLSQFESNTWSKAIPNLFHID 442

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A       +      P    L + +  LEGL RH STHAAGIV+ + PL+  V + 
Sbjct: 443  LKT-AYEQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                  L  TQ     +E  GL+K DFLGLK L +L  +  F+ +      D   IP DD
Sbjct: 502  -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGKPFDPKAIPLDD 560

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ESSG++  L  ++P   ED++A+ +LYRPGP++NI  +  RK
Sbjct: 561  QPTLALFARGDTNGVFQFESSGIKNVLRKLRPTAFEDVVAVNALYRPGPMENIDTFIARK 620

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E I    P +  +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    +
Sbjct: 621  NGQEPIAYPDPALAKILKPTYGVLVYQEQVMQVANVMGGFSLGEADLLRRAMSKKKSSVL 680

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+ +++  A++K HYP 
Sbjct: 681  AAEQDKFIEGALKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSKVAFWLAYLKVHYPA 740

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F AA M   M+N+ K++ + Q+A+   + ++ P +N     FK+   +I + L +IKG+
Sbjct: 741  AFFAALMNASMNNLPKLRTYVQEAKARKVGLLGPDINQSNGGFKLSQGKIRFGLLSIKGM 800

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                   I  A  + PF  L D   R+D K L     ++   AGA D F  +R Q L +L
Sbjct: 801  RRDFVEAIFAARKNGPFKDLRDLLQRLDPKWLKTDYYKAPTLAGAFDQFSNNRAQTLANL 860

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D +    +    +       +F+       +   +       +S R E E  VLG Y SG
Sbjct: 861  DELINSVKLAGND-----VGLFSMLAPKTIEAPEMP------ASERLEAEAEVLGVYLSG 909

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+D Y P+  +  +    +      G  + +  +V   ++ +T+ G  + ++   +   
Sbjct: 910  HPVDKYAPLKTQYRLVNVSDL---EEGRAVDILLLVRHIKRIRTKTGKPMAFIDGQDATG 966

Query: 1026 EYEANFFP 1033
                  FP
Sbjct: 967  NVSLTIFP 974


>gi|258508368|ref|YP_003171119.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
 gi|257148295|emb|CAR87268.1| DNA polymerase III, alpha subunit [Lactobacillus rhamnosus GG]
 gi|259649682|dbj|BAI41844.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
          Length = 1098

 Score =  884 bits (2284), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/1028 (32%), Positives = 519/1028 (50%), Gaps = 59/1028 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L +++         A+A+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALPDLIQAAKNRGYSAVALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q++I                     ++++     GY +L++L +++ L  Q     
Sbjct: 62   LLGMQIEIAD-----------------AKLLVIAENNTGYHQLLKLSTQIMLAQQ----- 99

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               L++   +   GL  +T   S P   A        A+  L T K      LY+ +   
Sbjct: 100  --PLAFADLLPLNGLAAVTLPDS-PFGVAVSERHEDQAQTFLTTLKAKQPSSLYIGV--- 153

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
               + + E  +   A T +LPL+A  N L+    D     V++A+   + ++ +D     
Sbjct: 154  --DEEHLEGTLPAFADTVKLPLLALGNVLYRDPTDAFTQKVMVAIEAGSQLNFRDPVLTD 211

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +LK  ++    F  + L  A+  T  IA R    +    P LP +   +    Q  
Sbjct: 212  AGPAWLKPPTDAAKPFVQAGLQAAVTQTEAIAARADVTIDFKQPQLPHYQTPD----QTS 267

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ L   A +GL  R    +I        Y+ RL++EL VI  M F+ YFL+V D + +
Sbjct: 268  SKDYLTKLAESGLAKRFHGQSI-----PPAYQDRLEYELRVIIEMGFADYFLVVWDVMNY 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K NI  G GRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D+D   +R
Sbjct: 323  AHKVNIMTGAGRGSAAGSLVSYALAITEVDPIEYNLLFERFLNPARAQMPDIDLDIPDNR 382

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E+I+YV +KYG   +AQIITFG+  AK A+RDV R   +   + +   K IPN     
Sbjct: 383  RGELIQYVHDKYGKNHMAQIITFGTFGAKQAIRDVARVFGLSQFESNTWSKAIPNLFHID 442

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A       +      P    L + +  LEGL RH STHAAGIV+ + PL+  V + 
Sbjct: 443  LKT-AYEQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                  L  TQ     +E  GL+K DFLGLK L +L  +  F+ +      D   IP DD
Sbjct: 502  -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGKPFDPKAIPLDD 560

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ESSG++  L  ++P   ED++A+ +LYRPGP++NI  +  RK
Sbjct: 561  QPTLALFARGDTNGVFQFESSGIKNVLRKLRPTAFEDVVAVNALYRPGPMENIDTFIARK 620

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E I    P +  +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    +
Sbjct: 621  NGQEPIAYPDPALAKILKPTYGVLVYQEQVMQVANVMGGFSLGEADLLRRAMSKKKSSVL 680

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+ +++  A++K HYP 
Sbjct: 681  AAEQDKFIEGALKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSKVAFWLAYLKVHYPA 740

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F AA M   M+N+ K++ + Q+A+   + ++ P +N     FK+   +I + L +IKG+
Sbjct: 741  AFFAALMNASMNNLPKLRTYVQEAKARKVGLLGPDINQSNGGFKLSQGKIRFGLLSIKGM 800

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                   I  A  + PF  L D   R+D K L     ++   AGA D F  +R Q L +L
Sbjct: 801  RRDFVEAIFAARKNGPFRDLRDLLQRLDPKWLKTDYYKAPTLAGAFDQFSNNRAQTLANL 860

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D +    +    +       +F+             +     +S R E E  VLG Y SG
Sbjct: 861  DELINSVKLAGND-----VGLFSMLAPKTI------EVPEMPASERLEAEAEVLGVYLSG 909

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+D Y P+  +  +    +      G  + +  +V   ++ +T+ G  + ++   +   
Sbjct: 910  HPVDKYAPLKTQYRLINVSDL---EEGRAVDILLLVRHIKRIRTKTGKPMAFIDGQDATG 966

Query: 1026 EYEANFFP 1033
                  FP
Sbjct: 967  NVSLTIFP 974


>gi|313897381|ref|ZP_07830924.1| DNA polymerase III subunit alpha [Clostridium sp. HGF2]
 gi|312957751|gb|EFR39376.1| DNA polymerase III subunit alpha [Clostridium sp. HGF2]
          Length = 1026

 Score =  883 bits (2281), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1025 (35%), Positives = 573/1025 (55%), Gaps = 43/1025 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL V S Y+LL+  L++  I+         A+A+TD + +  A+ F        I+PI 
Sbjct: 3    VHLHVRSCYTLLQSTLTIPKIVAAAKRCGYTAVALTDKHVMHGAMAFYHACKKENIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++D+  Q+ L                V+L     GYQ L++L + +   ++     RI
Sbjct: 63   GMEVDVLEQEEL-------------YGFVVLAKNDAGYQNLLKLSTWLNTGEER----RI 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
                      +  I+LT G    ++         +    L   +K F D  YV++ R+  
Sbjct: 106  PDLDTLAYYAKDCIVLTNGDQNQMETLIVKEELDLLRHWLKLCRKQFSD-FYVSIARNDS 164

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G    +   + Q+    ++P  A +   F  EED E++  L A+     +  K     +P
Sbjct: 165  GLMEKKNPVLKQVCKELDIPYTALSRIYFEREEDEESYKTLCAIDQGVSLHDK-MLNYSP 223

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              Y +   EM  ++ D  E L+ +  IA  C   +Q+   +LP+F  K         E  
Sbjct: 224  RRYFRTPQEMQLLYED--EELQMSDRIAALCQVEMQLPKAVLPKFQNKYG----VSSEEF 277

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR+    GL+ R+    I     +  Y+QRLD+EL+VI RM+++ YFLIV DFI++AK  
Sbjct: 278  LRSLCQKGLQKRMQYQPI-----SSVYQQRLDYELDVIIRMQYADYFLIVWDFIRFAKTQ 332

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I +GPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D DF  +RRDEV
Sbjct: 333  HIYIGPGRGSAAGSLVAYCLGITHVDPIRYHLLFERFLNPERISMPDIDTDFPDNRRDEV 392

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I YV+  YG  RV+ IITF +L AK  LRDVG+A+++   Q+DRLCKL+PN     +   
Sbjct: 393  IHYVEQLYGKHRVSHIITFNTLAAKQVLRDVGKAMEINPRQIDRLCKLVPNVIKVTLDY- 451

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +D+RF+E   +  ++ RL   ++KLEGL RHAS HAAGIV  D  + Q+ P+  DV 
Sbjct: 452  AYQNDARFKELINSGETMRRLYATARKLEGLPRHASLHAAGIVFSDEAIEQVCPLI-DVD 510

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
              +  TQF M+++E+ GLIK DFLGL+ LT++ + +  +      K+D+  IP DD +TY
Sbjct: 511  EGICATQFTMEYLEELGLIKMDFLGLRNLTIIDEIVQHINATADKKLDIMRIPLDDAKTY 570

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L+    T+G+FQLES GM+  +  MQP+C EDI+A ++L+RPGP++NI  Y +R+   E
Sbjct: 571  ALIRAVDTVGVFQLESEGMKNLIRKMQPNCFEDIVATIALFRPGPMENIPEYLDRREHPE 630

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  IHP + P+L+ T G++IYQEQ+MQ+AQ ++G++L +AD LR+A+ KK  EE+ + +
Sbjct: 631  KVDYIHPSLQPILQNTYGIMIYQEQIMQVAQTMAGFTLGKADNLRKAISKKKGEELRRMQ 690

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FISGA + G  + +A  ++ L+ KFA+YGFN+SH+ AY +I+YQ A++K + P+ F  
Sbjct: 691  AEFISGALRKGYDEALAQKVYALIMKFANYGFNRSHSVAYGMIAYQLAYLKANAPLYFFN 750

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            + +   + +  K  ++  +AR+ NIQI+ P VN     + + DN + +    IKG+G+  
Sbjct: 751  SLLNSVIGSETKTSEYVFEARKRNIQILLPDVNRSHNQYGIEDNALRFPFVGIKGIGSAV 810

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            +  I+E       F    DF +R++  K+ ++ +E L++AGALDCF   R  L+ SL++ 
Sbjct: 811  SSLIVEERDKKGEFRDFFDFTARMNGNKIGKKTIEILIYAGALDCFKVGRASLMASLEDA 870

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +YA  V+    ++   +F  +  +      +      N+++R E E+  +GFY S HP+
Sbjct: 871  LRYADLVKIEDVDQV--LFDFDLVSKPAMTMMRD----NATIRSEKEKEAIGFYLSRHPI 924

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
               +  + K        S+   +G  ++   +V   +Q +T+ G  + +V  S+   +++
Sbjct: 925  ADVRSRMGK--DLPILISLPKYKGRYVKFVCLVDRCRQYRTKNGDMMMFVIGSDETGKFD 982

Query: 1029 ANFFP 1033
                P
Sbjct: 983  LVCMP 987


>gi|257784701|ref|YP_003179918.1| DNA polymerase III, alpha subunit [Atopobium parvulum DSM 20469]
 gi|257473208|gb|ACV51327.1| DNA polymerase III, alpha subunit [Atopobium parvulum DSM 20469]
          Length = 1278

 Score =  882 bits (2279), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/1027 (32%), Positives = 525/1027 (51%), Gaps = 69/1027 (6%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC+    + D ++   +          ++LL     GY  L++++S     +   
Sbjct: 125  IKPIFGCEAYFILDDCIEKGTK-----QVRYHLILLAKNETGYVNLMKMMSEAGSKEMFY 179

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R  L  L+    EG+I  +   SG I R  F    + AE+    ++ +FGD  Y+ +
Sbjct: 180  YKPRTTLEMLKRYH-EGIICTSACVSGIIPRMLFEGRPEEAERWAKIYQDIFGDDFYLEI 238

Query: 187  QRHRG--------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            Q H           DR    ++V++ +   + +VATN++ +L++ED    D+   +    
Sbjct: 239  QDHGLSDPSWGGYTDRTLAERIVKMGHDLGIKVVATNDNHYLTKEDASVQDIASCIGSGA 298

Query: 239  VVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V  ++R R+T  + YLK+  EM  IFS  PEA+ENT+E+A +C++ L      LP+F +
Sbjct: 299  RVDDENRKRMTGSEFYLKSEQEMRQIFSWCPEAIENTIEVANKCNYELDWTHMYLPKFPD 358

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                   +  E   R +   GL  R          +  + + R ++E ++I +  F+ YF
Sbjct: 359  LAE---GETSEERFRKECELGLARRYGDDWQNVVINEINVKDRFEYEYDIICKKGFADYF 415

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV ++++WAK+N I VGPGRGS AG++ AYA+ IT  DPL   L+FERFL+P R  MPD
Sbjct: 416  LIVQEYVRWAKENGIGVGPGRGSAAGAIVAYAMDITSFDPLENGLMFERFLSPQRSEMPD 475

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  +RR EV+ +V+  YG ERV+ +IT+ +++AK A+ D  R L  P     RL K
Sbjct: 476  IDMDFDDERRLEVVEHVRQIYGSERVSHVITYSTIKAKQAINDACRVLGYPVYMGQRLSK 535

Query: 478  LIPNDPAHPVSL----------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
            +IP DP   +             A    + F EA   DP   R+++ +  +EGL+R    
Sbjct: 536  MIPGDPNAHLKFVLHKAQEGQKGADQYSADFEEAYENDPDARRIIDAALSIEGLHRGEGV 595

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HA  ++I   P++  VP   D +  + +TQ+    +   GL+K DFLGL+TLT++ +++ 
Sbjct: 596  HACAVLIAPTPVNDHVPTKVDTKGGVEITQYEGHSVADMGLLKMDFLGLRTLTVISRAIK 655

Query: 588  FLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             +     + +D+  IPF D E Y LL    T G+FQ+ES+GM   ++GM+P   + I+AL
Sbjct: 656  NVKDSYGIDIDVDSIPFTDPEIYRLLREGRTAGVFQVESAGMTATIKGMRPTEYKHIVAL 715

Query: 647  VSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ++LYRPGP++  +V  Y NR NG+E++    P +  +L+ET G ++YQEQVMQI+  +SG
Sbjct: 716  IALYRPGPLNAGMVTSYINRMNGREEVKDYDPRLHDILEETYGTMVYQEQVMQISMKMSG 775

Query: 705  YSLSEADV------------LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            ++  E+D             ++  +        +  +  + +GA +NG  +++A +I++ 
Sbjct: 776  FTAGESDKVRKAVAKKKIKLMQEVVQHWDDGTDETMEAHWKNGAVRNGFDRSVAESIWDD 835

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + +FA Y FNKSH+A YA++  QTAW+K HYP EF+AA +T  M   +KI  +    R  
Sbjct: 836  VLEFASYAFNKSHSAGYAILVMQTAWIKAHYPHEFMAAVLTSYMGKTDKIVHYVSACRHE 895

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSR 871
             I+I+PP +N    DF      I +  A I+GVG      IM E     PF ++ DF  R
Sbjct: 896  GIKILPPDINESGKDFTATKEGIRFGFAGIRGVGAGVGEAIMLERQKGGPFANIHDFVDR 955

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD-----NIQKYAQWVEKNRTNKHENI 926
            +D+ +  R V+E+L+ AGA D  GY+RMQ++  +D     NI   A   +K++     ++
Sbjct: 956  MDASQAKRNVVEALIKAGAFDSTGYTRMQMMSFVDKNNPQNIIDAATKRQKDKAVGQFSM 1015

Query: 927  FAH----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
            F      E   FSD +        +   +   E  VLG Y S HPL  Y+  L K     
Sbjct: 1016 FDMFAEVEGSGFSDIVPEPDGVEWDRRFKLTKEYEVLGIYVSDHPLRPYEYALAKSRDYA 1075

Query: 983  YEESVA----------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
              E                      G  IR A MV +  ++ T+ G  +  VT  +    
Sbjct: 1076 LAEIEENVEVQLPNGAMSQQFKVPEGKPIRFAGMVTNVMKRTTKNGDPMAIVTLEDMEGS 1135

Query: 1027 YEANFFP 1033
                 FP
Sbjct: 1136 VTIVMFP 1142


>gi|229552164|ref|ZP_04440889.1| possible DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|229314466|gb|EEN80439.1| possible DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
          Length = 1098

 Score =  882 bits (2279), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/1028 (32%), Positives = 518/1028 (50%), Gaps = 59/1028 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L +++         A+A+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALPDLIQAAKNRGYSAVALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q++I                     ++++     GY +L++L +++ L  Q     
Sbjct: 62   LLGMQIEIAD-----------------AKLLVIAENNTGYHQLLKLSTQIMLAQQ----- 99

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               L++   +   GL  +T   S P   A        A+  L T K      LY+ +   
Sbjct: 100  --PLAFADLLPLNGLAAVTLPDS-PFGVAVSERHEDQAQTFLTTLKAKQPSSLYIGV--- 153

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
               + + E  +   A T +LPL+A  N L+    D     V++A+   + ++ +D     
Sbjct: 154  --DEEHLEGTLPAFADTVKLPLLALGNVLYRDPTDAFTQKVMVAIETGSQLNFRDPVLTD 211

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +LK  ++    F  + L  A+  T  IA R    +    P LP +   +    Q  
Sbjct: 212  AGPAWLKPPTDAAKPFVQAGLQAAVTQTEAIAARADVTIDFKQPQLPHYQTPD----QTP 267

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ L   A +GL  R    +I        Y+ RL +EL VI  M F+ YFL+V D + +
Sbjct: 268  SKDYLTKLAESGLAKRFHGQSI-----PPAYQDRLQYELRVIIEMGFADYFLVVWDVMNY 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K NI  G GRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D+D   +R
Sbjct: 323  AHKVNIMPGAGRGSAAGSLVSYALAITEVDPIEYNLLFERFLNPARAQMPDIDLDIPDNR 382

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E+I+YV +KYG   +AQIITFG+  AK A+RDV R   +   + +   K IPN     
Sbjct: 383  RGELIQYVHDKYGKNHMAQIITFGTFGAKQAIRDVARVFGLSQFESNTWSKAIPNLFYID 442

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A       +      P    L + +  LEGL RH STHAAGIV+ + PL+  V + 
Sbjct: 443  LKT-AYEQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                  L  TQ     +E  GL+K DFLGLK L +L  +  F+ +      D   IP DD
Sbjct: 502  -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGKPFDPKAIPLDD 560

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ESSG++  L  ++P   ED++A+ +LYRPGP++NI  +  RK
Sbjct: 561  QPTLALFARGDTNGVFQFESSGIKNVLRKLRPTAFEDVVAVNALYRPGPMENIDTFIARK 620

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E I    P +  +L+ T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    +
Sbjct: 621  NGQEPIAYPDPALAKILRPTYGVLVYQEQVMQVANVMGGFSLGEADLLRRAMSKKKSSVL 680

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+ +++  A++K HYP 
Sbjct: 681  AAEQDKFIEGALKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSKVAFWLAYLKVHYPA 740

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F AA M   M+N+ K++ + Q+A+   + ++ P +N     FK+   +I + L +IKG+
Sbjct: 741  AFFAALMNASMNNLPKLRTYVQEAKARKVGLLGPDINQSNGGFKLSQGKIRFGLLSIKGM 800

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                   I  A  + PF  L D   R+D K L     ++   AGA D F  +R Q L +L
Sbjct: 801  RRDFVEAIFAARKNGPFKDLRDLLQRLDPKWLKTDYYKAPTLAGAFDQFSNNRAQTLANL 860

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D +    +    +       +F+             +     +S R E E  VLG Y SG
Sbjct: 861  DELINSVKLAGND-----VGLFSMLAPKTI------EVPEMPASERLEAEAEVLGVYLSG 909

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+D Y P+  +  +    +      G  + +  +V   ++ +T+ G  + ++   +   
Sbjct: 910  HPVDKYAPLKTQYRLINVSDL---EEGRAVDILLLVRHIKRIRTKTGKPMAFIDGQDATG 966

Query: 1026 EYEANFFP 1033
                  FP
Sbjct: 967  NVSLTIFP 974


>gi|163791498|ref|ZP_02185904.1| DNA-directed DNA polymerase III, alpha subunit [Carnobacterium sp.
            AT7]
 gi|159873221|gb|EDP67319.1| DNA-directed DNA polymerase III, alpha subunit [Carnobacterium sp.
            AT7]
          Length = 1112

 Score =  880 bits (2274), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1029 (33%), Positives = 548/1029 (53%), Gaps = 48/1029 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV LQV SSYSLL+  +++  ++ K       AIA+TD N L+  ++F +      I+P
Sbjct: 2    SFVQLQVISSYSLLQSTVTIEALVLKAKERGYKAIALTDYNILYGIVDFYKMCKKHHIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++           L +   G        SI+LL   A GY+ L+ L S   LL + +   
Sbjct: 62   LL----------GLTLDVGGIIKTDENHSILLLAKNAAGYESLLTLSSEKMLLAETE--- 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
            R+ +  ++E  +  LI +T G  G ++     N  + A   +  ++ LF +R  Y+ +Q 
Sbjct: 109  RLTIDQIKE-HSRNLIAVTPGEKGEVEHFLLQNEKKAAAAVVEKWQALFPERQFYLGVQL 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            H+     +++ + +LA       VA  +  ++   D  +  VL A+    V+ +     V
Sbjct: 168  HQNLLPIKDA-LTELAKETGTLPVALQDVRYIDATDDFSTRVLRAINKGEVL-ETQHAAV 225

Query: 249  TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              ++YL   S+    F D  L EA + T +IA      + ++  +LP+F        +K 
Sbjct: 226  IGEYYLPESSQAEKRFIDNGLKEAAQRTNDIANMIDVEIALNQQLLPKFPLP----TEKT 281

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+ + + GLE R+++         + Y  RL++EL VI +M F  YFLIV D + +
Sbjct: 282  TTEFLKEQCLVGLEKRVSE-------PDKRYTDRLEYELTVIGKMGFEDYFLIVWDVMAY 334

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K  I  G GRGS AGS+ AY L ITD+DP+ + LLFERFLN +R +MPD D+DF  +R
Sbjct: 335  AHKVKIVTGAGRGSAAGSLVAYLLEITDVDPIEYDLLFERFLNEERYTMPDIDLDFPDNR 394

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+++++YV+NKYG   VAQI TFG+L AK AL+DV R   +  S+     K IP+     
Sbjct: 395  REDILQYVKNKYGKNHVAQIATFGTLAAKMALKDVSRVFGLSPSEASVWSKAIPSVLGIT 454

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A       R     +     L E ++K+EGL RH STHAAG+VI D+PL+  VP+ 
Sbjct: 455  LE-KAFKQSVNLRNLVGENEKNTLLFETAKKIEGLPRHISTHAAGVVISDKPLTHYVPLQ 513

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
            +   SD+ +TQ+ M  +E+ GL+K DFLGLK L+++  +L  +  + G +++L  IP  D
Sbjct: 514  KG-GSDILLTQYPMGNVEEIGLLKMDFLGLKNLSIIDNALKLIQRETGERLNLLNIPMQD 572

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             ET  L      +GIFQ ES+G++  L  ++P  +EDI A+ +LYRPGP++ I  +  RK
Sbjct: 573  QETLQLFRKGDMVGIFQFESAGIKSVLRRLEPTSMEDIAAVNALYRPGPMEQIDTFIKRK 632

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G   I   H  +  +L  T GV++YQEQVMQ+A  + GY+L +AD+LRRA+GKK K  +
Sbjct: 633  KGLLPIEYPHETLSEILSVTYGVMVYQEQVMQVASKMGGYTLGQADILRRAIGKKQKSVI 692

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            DK+++ F SGA+K G S  +A+ +++ + +FA+YGFN+SHA AY+ I+YQ A++K HYP 
Sbjct: 693  DKERQHFTSGAAKLGYSPEVAIQVYDYIERFANYGFNRSHAVAYSFIAYQMAYLKAHYPH 752

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  A +   ++N  K+K +  +A++ NI+++ P +N     F +   +I +  ++IKG+
Sbjct: 753  AFFVALLNSALNNSAKMKDYIIEAKKRNIKVLSPDINASFGGFSLVKGQILFGFSSIKGL 812

Query: 846  GTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
                   ++    +   +  L DF  R++ K L    ++ L++ GA D F YSR  LL S
Sbjct: 813  RRDMIDDMVTNRKNDGSYKDLIDFLKRLNKKWLKPEYIKPLIYVGAFDQFEYSRGTLLAS 872

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            ++ I +          +    +          K   E  S      + ENE+  LG Y S
Sbjct: 873  IEGIIQSV--HMSGNNSGLFELL---------KPKYEFASDLTIEEKLENEELFLGTYLS 921

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            GHP + Y  +     I    E +    G   R+   + +  +  T+KG  + +VT S+ +
Sbjct: 922  GHPTEKYDSVRPWKQIVYVNELII---GKTSRVIGSIKNIHKITTKKGEPMAFVTISDTS 978

Query: 1025 KEYEANFFP 1033
             +     FP
Sbjct: 979  GDCSLTLFP 987


>gi|257125251|ref|YP_003163365.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b]
 gi|257049190|gb|ACV38374.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b]
          Length = 1185

 Score =  879 bits (2272), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1083 (33%), Positives = 585/1083 (54%), Gaps = 83/1083 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ YSLLEG   ++  ++K       A+AITDT ++F A+EF +K   AGI+PI
Sbjct: 5    FVHLKLHTEYSLLEGVGKIDEYVEKAKKTGVKALAITDT-SMFGAIEFFKKCKNAGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ +   D L+   +         S+ LL     GY+ L +L S  Y     +   +
Sbjct: 64   IGLEVFL---DGLEKVGE--------FSLTLLAKNQNGYKNLSKLSSISYSR-FTRNRNK 111

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L++  ++ L +L+GG +  + +      +    + +    K FGD  ++ +    
Sbjct: 112  IKYDELKKY-SDDLYILSGGINSEVVKGILDLENTQVRRVVEKLGKDFGDNFFIEVPAVE 170

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS---QKDRPR 247
              ++ R+     +        V TN+  + + +D     ++ ++   + +     ++   
Sbjct: 171  RLEKARKMLFDIVRKNKFDNFVITNDVYYPNRKDAVLQKIVESIKEGSKIDTEKSENSEI 230

Query: 248  VTPDHYLKNRSEMVSIFS------DLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            +  D YLK+ +E+   F            + N  +I   C+   + H    P++   +  
Sbjct: 231  LYDDLYLKSENEIEKSFENKEYSEFYETGINNVEKIMENCNVDFEFHHFKFPKYSLPQNI 290

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA--------------------------- 334
                 E+  LRN    GL  +  + +++                                
Sbjct: 291  ----SEKEFLRNLVFEGLFHKYLKKSVSDSEKLQLDKNFEIIQKEIAKDEIAGQKLKEVK 346

Query: 335  ----------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                      ++  +R ++EL +I +M ++GYF+IV DFI+++++N + VGPGRGS AGS
Sbjct: 347  IREELLKNNLENVLERAEYELEIIDKMGYNGYFIIVWDFIKFSRENGVYVGPGRGSAAGS 406

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            + +YAL IT+IDPL ++L+FERFLNP+R+SMPD DIDF Q++R+ VI YV NKYG E VA
Sbjct: 407  IVSYALNITEIDPLEYNLIFERFLNPERISMPDIDIDFDQEQREIVINYVVNKYGAEYVA 466

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
             IITFG+L+A+ A+RDVGR L +   +VD++ K+IP +        A+ +   FR+    
Sbjct: 467  HIITFGTLKARLAIRDVGRVLNVSLVKVDKIAKMIPFN---TELKDALNNIPEFRKMYGT 523

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            D  + ++++ S KLEG  RHAS HAAG+VI    LS  +P Y D ++ +  TQ+ MK +E
Sbjct: 524  DREIKKVIDYSLKLEGKVRHASVHAAGVVISKDVLSDEIPTYSDGKTKIVSTQYQMKELE 583

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
            + G++K DFLGLK LT+L+K+++ +  +R  K+ L+ IP +D +TY LLT   T+G+FQ 
Sbjct: 584  ELGILKMDFLGLKNLTILRKTVENIEKRRKTKIVLNDIPLNDEKTYELLTKADTMGVFQC 643

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPM 681
            ES+G+R  ++ M+ +  EDIIAL++LYRPGP+ + +V  + N KN + +I  I   +  +
Sbjct: 644  ESAGIRSLMKKMKIEKFEDIIALLALYRPGPLRSGMVDDFINVKNNRTEIKYIDDSLKYI 703

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L+ET G+I+YQEQVM+I   ++ YSL EAD LRRA+GKK  E M K +E+F++ A KNG+
Sbjct: 704  LEETYGIILYQEQVMKIVSEMANYSLGEADELRRAIGKKNPELMKKNREKFVTNAEKNGV 763

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
                A  I++L+ KF  YGFNKSH+AAYA+I Y TA+ K +YP+EF AA +T E+ N+++
Sbjct: 764  FSKKANEIYDLVEKFGGYGFNKSHSAAYALIVYWTAYFKANYPLEFFAAIITTEVHNLDR 823

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVG----------DNRIYYSLAAIKGVGTTTAR 851
               F  +A++  I I  P VN    DF++              I + L A+KG+G     
Sbjct: 824  FVVFVNEAKEKGINIFLPDVNLSDYDFEIEESFENNNEIKKMGIRFGLFAVKGIGAALIN 883

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
             I +   +  F S EDF  R+    + ++ LES + +GALD    +R +  +S+D I +Y
Sbjct: 884  EIKKERENGDFSSYEDFVYRMKQNGITKKQLESFILSGALDKLNGNRFEKYKSIDKILEY 943

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            +Q   ++  +    +F+ EK  F  K  +EK       V  ENE+  LG Y S HPL+  
Sbjct: 944  SQKKYESEEDLQMILFSGEK-KFKGKFEMEKADEFPQKVLLENEKEYLGIYVSSHPLNEK 1002

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGWVTFSEPAKEYEAN 1030
            K ++  +      E ++      +R+  +V + ++  TR G   +      +  K  E  
Sbjct: 1003 KRLINIISHNKISE-ISQKELKKVRIIGIVKNVKKFATRAGKEPMVKFEMEDFQKNIEVV 1061

Query: 1031 FFP 1033
             FP
Sbjct: 1062 CFP 1064


>gi|254796559|ref|YP_003081395.1| DNA polymerase III subunit alpha [Neorickettsia risticii str.
            Illinois]
 gi|254589796|gb|ACT69158.1| DNA polymerase III subunit alpha [Neorickettsia risticii str.
            Illinois]
          Length = 1060

 Score =  879 bits (2271), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1015 (41%), Positives = 607/1015 (59%), Gaps = 81/1015 (7%)

Query: 23   LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
            +        I+D   A   PA+A+TD + +  ALEF++ A A+GIQPIIG  L I     
Sbjct: 1    MRAVTKPRKIVDLARAAGMPAVALTDIDTMAGALEFAEYAKASGIQPIIGVDLSISHN-- 58

Query: 83   LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
                            ++L+    EGY+ +I+L   + L        R+ L+ +    ++
Sbjct: 59   -----------RVDSRLLLIAKNEEGYRNMIKLSGIVSLR-------RVALNEVFTY-SK 99

Query: 143  GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQ 202
            GLI+L     G        + S  AE  +   K++F   L++ +QR    ++  E +++Q
Sbjct: 100  GLILLL----GEFFIDAINSYSIDAETLVSDLKQVFDKDLFIEIQRLG--NQSAEEKLIQ 153

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            L Y H +P VATN+ LF   +  EAHDVL  +   T V+  +R   +P+ Y K+  EMV+
Sbjct: 154  LGYKHNIPFVATNDVLFPDTDFREAHDVLTCIGSLTYVNDINRIHYSPESYFKSTEEMVA 213

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            +F+DL EAL NTV IARRCSF+ +V +PILP+F      + + +E +ELR  + AGL+ R
Sbjct: 214  LFADLKEALHNTVLIARRCSFMPEVRSPILPKF------ECEMDESDELRRLSYAGLQRR 267

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
            +           Q+Y  RL++EL +I  M ++GYFLIVADFI W+K N I VGPGRGSG 
Sbjct: 268  MGADV------PQNYLDRLEYELGIIIDMNYAGYFLIVADFICWSKANGIVVGPGRGSGV 321

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GS+ A+ L IT +DPL+F+L FERFLNP R+SMPDFD+DFCQ++R  VI YV+ KYG   
Sbjct: 322  GSIVAWCLGITGLDPLKFALFFERFLNPVRVSMPDFDVDFCQEKRHLVIEYVRKKYG--H 379

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREA 501
            VAQI+TFG+LQ +AALRDVGR LQ+PY +VDR+CK+IPN+PA+P+SLQ AI  D   ++ 
Sbjct: 380  VAQIMTFGTLQPRAALRDVGRVLQLPYGRVDRICKMIPNNPANPISLQEAINLDKDLQKE 439

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
               D S+ +LL+++ KLEG  RHASTHAAGIVI D P+   +P+Y D  SD+PVTQ++MK
Sbjct: 440  SENDESIAKLLDLALKLEGTLRHASTHAAGIVISDTPIDDYLPIYHDKESDIPVTQYSMK 499

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            ++EKAGLIKFDFLGLKTLT++ ++   +  +    D+  IP DD  TY LL+    +G+F
Sbjct: 500  YVEKAGLIKFDFLGLKTLTVINQACSLVRLKNPNFDIDSIPLDDKRTYDLLSAGNAIGVF 559

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            QL+++ M + L+ + PDC EDIIAL+SL RPGP+ NI  Y  RK+ KE +   HPL++  
Sbjct: 560  QLDNAYMCETLKRLHPDCFEDIIALISLNRPGPMANIPTYIARKHRKEAVKYPHPLLESS 619

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            LKET GV+IYQEQVM++ +LL+GY+L+EAD+LRR MGKKI+ EM +Q E+F+ GA +NGI
Sbjct: 620  LKETFGVVIYQEQVMEMVRLLAGYTLAEADILRRVMGKKIRAEMSEQAEKFVEGAKRNGI 679

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
                A  IFE++ KFA YGFNKSHAAAYA+ISYQTA++K ++P+EF  A++ LE+ + +K
Sbjct: 680  DTERAREIFEMIEKFAGYGFNKSHAAAYALISYQTAFLKANFPLEFTTAALNLELHHTDK 739

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
            +    QDA+   I I+PP +N   + F + DN I YSLAA+K VG   A  I + S   P
Sbjct: 740  LAILIQDAKNCGITILPPDINKSKIFFSIEDNAIRYSLAALKNVGEAAASAIQKRS---P 796

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F ++ +    +D K ++R+ +ESL+ +GALD     R  L   L ++        K    
Sbjct: 797  FKTIAELQRCLDGKMVHRKAVESLIKSGALDVLSPERSGLYSCLKDLV------GKEDDG 850

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                +F          +        N   R + E    GF+   HPL  Y+  L+    +
Sbjct: 851  AQMTLFEIAATKPEKTVK-----PWNFFERTQCEFDAFGFFLYDHPLFPYRKFLKLSPNQ 905

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR----IGWVTFSEPAKEYEANFF 1032
                           +A ++   + +   +G R    +   T ++         F
Sbjct: 906  ---------------IAGVITELRIRS--RGDRKFAVMHVSTVNDIY----TVVF 939


>gi|260890684|ref|ZP_05901947.1| DNA polymerase III alpha subunit [Leptotrichia hofstadii F0254]
 gi|260859562|gb|EEX74062.1| DNA polymerase III alpha subunit [Leptotrichia hofstadii F0254]
          Length = 1185

 Score =  878 bits (2268), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1083 (33%), Positives = 588/1083 (54%), Gaps = 83/1083 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ YSLLEG   ++  ++K       A+AITDT ++F A+EF +K   AGI+PI
Sbjct: 5    FVHLKLHTEYSLLEGVGKIDEYVEKAKKIGVKALAITDT-SMFGAIEFFKKCKNAGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ +   D L+   +         S+ LL     GY+ L +L S  Y     +   +
Sbjct: 64   IGLEVFL---DGLEKVGE--------FSLTLLAKNQNGYKNLSKLSSISYSR-FTRNRNK 111

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L++  ++ L +L+GG +  + +      +    + +    K FGD  ++ +    
Sbjct: 112  IKYDELKKY-SDDLYILSGGINSEVVKGILDLENTQVRRVIEKLGKDFGDNFFIEVPAVE 170

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS---QKDRPR 247
              ++ R+     +        V TN+  + + +D     ++ ++   + +     ++   
Sbjct: 171  RLEKARKMLFDIVRKNKFDNFVITNDVYYPNRKDAVLQKIVESIKEGSKIDTEKSENSEI 230

Query: 248  VTPDHYLKNRSEMVSIFS------DLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            +  D YLK+ +E+   F            + N  +I   C+   + H    P++   +  
Sbjct: 231  LYDDLYLKSENEIEKSFENKEYSEFYETGINNVEKIVENCNVDFEFHHFKFPKYSLPQN- 289

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAK------------------------------- 330
                 E+  LRN    GL  +  + +++                                
Sbjct: 290  ---VSEKEFLRNLVFEGLFHKYLKKSVSDSEKLQLDKNFEIIEKEIAKDEIAGQKLKEVK 346

Query: 331  ------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                   ++ ++  +R ++EL +I +M ++GYF+IV DFI+++++N + VGPGRGS AGS
Sbjct: 347  IREELLKHNLENVLERAEYELEIIDKMGYNGYFIIVWDFIKFSRENGVYVGPGRGSAAGS 406

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            + +YAL IT+IDPL ++L+FERFLNP+R+SMPD DIDF Q++R+ VI YV NKYG E VA
Sbjct: 407  IVSYALNITEIDPLEYNLIFERFLNPERISMPDIDIDFDQEQREIVINYVVNKYGAEYVA 466

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
             IITFG+L+A+ A+RDVGR L +   +VD++ K+IP +        A+ +    R+    
Sbjct: 467  HIITFGTLKARLAIRDVGRVLNVSLVKVDKIAKMIPFN---TELKDALNNIPEIRKMYET 523

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            D  + R+++ S KLEG  RHAS HAAG+VI    LS  +P Y D ++ +  TQ+ MK +E
Sbjct: 524  DREIRRVIDYSLKLEGKVRHASVHAAGVVISKDVLSDEIPTYSDGKTKIVSTQYQMKELE 583

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
            + G++K DFLGLK LT+L+K+++ +  +R +K+DL+ I  +D +TY LLT   T+G+FQ 
Sbjct: 584  ELGILKMDFLGLKNLTILRKTVENIEKRRKIKIDLNDISLNDEKTYELLTKADTMGVFQC 643

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPM 681
            ES+G+R  ++ M+ +  EDIIAL++LYRPGP+ + +V  + N KN K +I  I   +  +
Sbjct: 644  ESAGIRSLMKKMKIEKFEDIIALLALYRPGPLRSGMVDDFINVKNNKTEIKYIDNSLKYI 703

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L+ET G+I+YQEQVM+I   ++ YSL EAD LRRA+GKK  E M K +E+F++ A KNG+
Sbjct: 704  LEETYGIILYQEQVMKIVSEMANYSLGEADELRRAIGKKNPELMKKNREKFVTNAEKNGV 763

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
                A  I++L+ KF  YGFNKSH+AAYA+I Y TA+ K +YP+EF AA MT E+ N+++
Sbjct: 764  LSKKANEIYDLVEKFGGYGFNKSHSAAYALIVYWTAYFKVNYPLEFFAAIMTTEVHNLDR 823

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----------RIYYSLAAIKGVGTTTAR 851
               F  +AR+  I I  P VN    DF++ +N           I + L AIKGVG     
Sbjct: 824  FVVFVNEAREKGINIFLPDVNLSDYDFEIEENQADNENFGKVGIRFGLFAIKGVGAALIN 883

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
             I +   +  F S +DF  R+    + ++ LESL+ +GALD    +R +  +S+D + +Y
Sbjct: 884  EIKKERKNGKFVSYKDFGYRMKQNGITKKQLESLILSGALDGLDGNRFEKYKSIDKVLEY 943

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            +Q   ++  +    +F  +K    D   +EK       V  +NE+  LG Y S HPL+  
Sbjct: 944  SQKKYESEEDFQLILFGGKKEISVD-FQMEKSEEFPQKVLLQNEKEYLGIYVSSHPLNEK 1002

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGWVTFSEPAKEYEAN 1030
            K ++  +      E ++      +R+  +V + ++  TR G   +      +  K  E  
Sbjct: 1003 KNLINIISHNKISE-ISQKELKKVRIIGIVKNVKKFATRAGKEPMVKFEMEDFQKSIEVI 1061

Query: 1031 FFP 1033
             FP
Sbjct: 1062 CFP 1064


>gi|262341080|ref|YP_003283935.1| DNA polymerase III subunit alpha [Blattabacterium sp. (Blattella
            germanica) str. Bge]
 gi|262272417|gb|ACY40325.1| DNA polymerase III subunit alpha [Blattabacterium sp. (Blattella
            germanica) str. Bge]
          Length = 1434

 Score =  877 bits (2267), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1072 (32%), Positives = 543/1072 (50%), Gaps = 73/1072 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------- 63
            + H+  H+ +S+L   + + +++D+      PA+ ITD  NL  +  F            
Sbjct: 253  YSHIHNHTYFSILYSTVDIRSLVDRAIHFNMPAVGITDYGNLMGSFHFLNAIHSINKKNY 312

Query: 64   -AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                I+ I+GC++   + DN       K         V L    +GY  L +L S  +  
Sbjct: 313  PKKLIKGIVGCEVF--LSDNYLQKKFTKDEPDKRYQQVFLSKNKKGYHNLAKLCSLGFTE 370

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                   RI    +++   E LI LTG  +  I         + AEK  L +K+LFGD  
Sbjct: 371  GFYAGIPRIGKKLIEKY-KENLIALTGDLNAEIPYTILNYGERKAEKVFLWWKELFGDDF 429

Query: 183  YVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ L RH   +    +  +++ +  + +  +  NN+ +L + +  AHD+L+ V +    S
Sbjct: 430  YIELLRHGLEEENHVNDILLKFSKKYHVKYIVQNNTFYLDKNEANAHDILLCVKNGEKQS 489

Query: 242  QK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                            + Y KN  EM  IFSDLPE+ +   E+  +          +LP+
Sbjct: 490  TPIGKGKGYRFGFPNHEFYFKNSEEMKKIFSDLPESFDFLEELVNKIESYHLSRKILLPK 549

Query: 295  F--------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
            F           + D   + E   L+     G + R            ++ ++R+ FEL 
Sbjct: 550  FQIPRSFEDPMDKIDGGNRGENRFLKRITYEGAKERYKNM-------TKEIQERILFELK 602

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
             I R+ + GYFLIV +FIQ A+K NI +GPGRGS AGSV AY + IT+IDP+++ LLFER
Sbjct: 603  TIERIGYPGYFLIVHNFIQQARKMNISIGPGRGSVAGSVVAYCIGITNIDPIKYHLLFER 662

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+S+PD DIDF    RD++I +V  KYG  +VAQIIT+ ++ AK+++RD GR L 
Sbjct: 663  FLNPNRISLPDIDIDFDDRGRDKIIEWVVQKYGKNQVAQIITYATMGAKSSIRDTGRVLD 722

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE------------ARLADPSVDRLLEI 514
            +   + DRL K+IPN  +    L       + R+            A   D    ++L+ 
Sbjct: 723  LSLKETDRLAKMIPNMLSLKTILSENCSIEKIRKEDTNNIQKLRKIAINKDSLEGKVLQQ 782

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++ LEG  R    HA GI+I    + + +P+     SDL +TQF+   +E AGL+K DFL
Sbjct: 783  AKILEGTIRSTGIHACGIIISPYNIKEYIPVSVSKESDLLLTQFDNHVVEHAGLLKMDFL 842

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            GLKTLT+++ +++ + ++         P +D +TY L     T+ +FQ ES GM++ L  
Sbjct: 843  GLKTLTIIKDAVNLIKKKRKNNTELSFPLEDEKTYCLFQKGETIAVFQYESPGMQKYLRQ 902

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
            ++PD  +D+IA+ +LYRPGP+  I  + +RK+GKE I    P ++  LKET G+ IYQEQ
Sbjct: 903  LKPDKFDDLIAMTALYRPGPLQYIPNFISRKHGKEAITYDLPEMEEFLKETYGITIYQEQ 962

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VM IAQ ++ +S  +AD+LR AMGKK KE ++  + +FI  A K G SK I   I++   
Sbjct: 963  VMLIAQKIADFSKGDADLLRIAMGKKQKEVLNTMRNQFIDSAMKKGYSKNILEKIWKDWE 1022

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+ Y FNKSHA  YA I++QTA++K H+P E++A+ ++  M N+ ++  F ++ R+ NI
Sbjct: 1023 YFSCYAFNKSHATCYAYIAFQTAYLKAHFPYEYMASVLSNNMHNIRQLTFFIEECRKMNI 1082

Query: 815  QIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRV 872
             ++ P +N     F+V   NRI + L  IKGVG    + I+ E   + P+ S+ D   R+
Sbjct: 1083 SVIHPDINESDSFFEVTDSNRIRFGLTGIKGVGENAVKIILQEREKNGPYTSILDLVKRI 1142

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQL--------LQSLDNIQKYAQWVEKNRTNKHE 924
            D + +N++ LESL+ +G+LDCF   R Q         L +L+ I ++    +K +     
Sbjct: 1143 DLRIVNKKTLESLILSGSLDCFHIHREQYFHIENDEKLNTLEKIIRFGSKFQKAKNK--- 1199

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                       D+  +    + ++  +   E+ VLG Y S HPLD Y   ++        
Sbjct: 1200 -----STEMKMDQPVIMGCDLWSNVYKLSKEKEVLGVYASAHPLDDYYYEMKYFMNTSLS 1254

Query: 985  ES------VATIRGNNIRLAAMVVSKQQKKT--RKGSRIGWVTFSEPAKEYE 1028
                     +   G  I    ++    +KKT  R G + G     +     E
Sbjct: 1255 NLSLISKKESMFVGKKIHTCGILSKI-EKKTYIRSGIKYGLFLLEDYNSSKE 1305


>gi|221194701|ref|ZP_03567758.1| DNA polymerase III subunit alpha [Atopobium rimae ATCC 49626]
 gi|221185605|gb|EEE17995.1| DNA polymerase III subunit alpha [Atopobium rimae ATCC 49626]
          Length = 1276

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/1025 (32%), Positives = 525/1025 (51%), Gaps = 67/1025 (6%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC+      D ++   +      T   ++LL     GY  L++++S     +   
Sbjct: 125  IKPIFGCEAYFITDDCIERGTK-----QTRYHLILLAKNETGYVNLMKMMSEAASKEMFY 179

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R  L  L+    EG+I  +   SG I R+FF    + AE+  L +K++FGD  Y+ +
Sbjct: 180  FKPRTTLDMLRRYH-EGIICTSACVSGIIPRSFFAGQPEEAERWALIYKEIFGDDFYLEV 238

Query: 187  QRHRGYDRYRE--------SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            Q H   D             Q++ L +   + +VATN++ +L+ ED    D+   +   +
Sbjct: 239  QDHGLSDPNWNGFTDRTLSEQILNLGHKLNIKVVATNDNHYLTREDASVQDIASCIGTGS 298

Query: 239  VVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
              +  +R R++  + Y K   EM  IFS  PE ++NT+E+A +C++ L      LP+F +
Sbjct: 299  KFADANRKRMSGNEFYFKTEEEMREIFSWAPEVIDNTLEVADKCNYELDWTHMYLPKFPD 358

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                   +  E   R +   GL  R  +          + ++R ++E ++I +  F+ YF
Sbjct: 359  LAE---GETSEERFRKECEEGLARRYGENWREVEISGINVKERFEYEYDIICKKGFADYF 415

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV ++++WAK+N I VGPGRGS AG++ AYA+ IT  DPL   L+FERFL+P R  MPD
Sbjct: 416  LIVQEYVRWAKQNGIGVGPGRGSAAGAIVAYAMDITTFDPLENGLMFERFLSPQRSEMPD 475

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  +RR EV+ +V+  YG ERV+ +IT+ +++AK A+ D  R L  P  Q  RL K
Sbjct: 476  IDMDFDDERRLEVVEHVRQLYGPERVSHVITYSTIKAKQAINDACRVLDYPVYQGQRLSK 535

Query: 478  LIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            +I NDP   +S         +    +  F EA   + +   +++ +  +EGL+R    HA
Sbjct: 536  MISNDPKAQLSKVLHKGDGEKNDLYNPDFEEAYNTEEASREIIDAALAIEGLHRGEGVHA 595

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
              ++I   P++  VP   D + ++ +TQF    +   GL+K DFLGL+TLT++ ++L  +
Sbjct: 596  CAVLIAPTPVNDHVPTKMDTKGEVEITQFEGHSVADMGLLKMDFLGLRTLTVISRALKNI 655

Query: 590  AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
                 V +++  IPF+D E Y L+    T G+FQ+ES+GM   ++GM+P   + I+AL++
Sbjct: 656  KANFDVDINVDEIPFEDPEIYRLMREGRTSGVFQIESAGMTATIKGMRPTEFKHIVALIA 715

Query: 649  LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            LYRPGP+   +V  Y +R NG+E+ V   P +  +L ET G ++YQEQVMQI+  +SG++
Sbjct: 716  LYRPGPLGAGMVSSYIDRMNGREEPVDYDPRLHDILAETYGTMVYQEQVMQISMKMSGFT 775

Query: 707  LSEADV------------LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
              E+D             ++  +        +  ++ +  GA +NG  +  A  I+E + 
Sbjct: 776  AGESDKVRKAVAKKKIKLMQEVIQHWDDGADETMEQHWKEGAVRNGFKRETAEIIWEDVL 835

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
            KFA Y FNKSH+A YA++  QTAW+K HYP E++AA +T  M   +KI  +    RQ  I
Sbjct: 836  KFASYAFNKSHSAGYAILVMQTAWLKAHYPHEYMAAVLTSFMGKTDKIVHYVSACRQEGI 895

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
            ++  P +N    DF      I +  A I+GVG   A  IM       PF +L DF  R+D
Sbjct: 896  KVSQPDINESGRDFTATKEGIRFGFAGIRGVGAGVAEAIMAERQKGGPFSNLRDFIDRMD 955

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD-----NIQKYAQWVEKNRTNKHENIFA 928
            + +  R V+E+L+ AGA D  GY+RMQL++ +D     N+   A   ++++ +   ++F 
Sbjct: 956  ASQAKRNVVEALIKAGAFDSTGYTRMQLMKLIDKNNPENLLDSAAKRQRDKASGQISMFD 1015

Query: 929  H----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                 E   F++              +   E  VLG Y S HPL  Y   L         
Sbjct: 1016 LFSEVEGSGFTEDFPDPDGVEWERRFKLSQEYDVLGIYVSDHPLTPYAYALSLARDYELV 1075

Query: 985  ESVAT----------------IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            +  AT                  G NIRL+ MV + Q++ T+ G  +  VT  +   E  
Sbjct: 1076 DIDATEEYRAPDGGIKERFKVPEGENIRLSGMVTNIQKRITKNGDPMAIVTLEDMEGELS 1135

Query: 1029 ANFFP 1033
               FP
Sbjct: 1136 LVLFP 1140



 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 40/87 (45%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
          +FVHL  HS +S+L+ A  +N+++ +    + PA+A+TD   LF   +F           
Sbjct: 2  AFVHLHNHSDFSILDAATRVNDMVKRAVDLKMPALALTDHGYLFGIPDFDLACRKYNDAQ 61

Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTV 96
              Q   D++   K  +  + P   +
Sbjct: 62 KDMQQWRSDLECFQKNWDLEEPPTDAL 88


>gi|313637979|gb|EFS03276.1| DNA polymerase III subunit alpha [Listeria seeligeri FSL S4-171]
          Length = 962

 Score =  877 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/998 (36%), Positives = 567/998 (56%), Gaps = 43/998 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQV S+Y LL    S+++++ K      PA+AITD N L+ A+EF QK  AA I+P
Sbjct: 2    GFVHLQVASAYDLLSSTASVDSLVAKAKEYHYPALAITDKNVLYGAVEFYQKCLAADIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG            +T QG         ++L+  T  GY  L+++ S +   ++G++  
Sbjct: 62   IIGMT----------VTIQGYLNPINSYELILIAETTAGYHELLKIASAIQTREEGQELP 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            +   SWL+   +E LI ++ G+ G ++R     +   A +       +FG D +Y++LQ+
Sbjct: 112  Q---SWLRAY-SEDLIAISPGAKGEVERLLMEENRDGALEAYQNLVAIFGGDSVYLSLQK 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +     ++       ++  VAT N  ++  +D +A +VL A+  +  V  +  P  
Sbjct: 168  ---ENPRLFGKIETFCTEEKVRAVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWETLPLA 224

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P+ Y  ++ E+   +      +  E T E+A RC   + +   +LPRF      +  + 
Sbjct: 225  GPN-YFTSQEEIEREWQTDFEKQVCEETGELAARCKVEIALDQHLLPRFPL----NADQS 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR  A AGLE R        G  A DY++RLD+EL VI  M F+ YFLIV D I++
Sbjct: 280  ASEVLRQTAYAGLEER--------GLMAPDYQERLDYELKVITEMGFADYFLIVWDVIRY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +R
Sbjct: 332  SREAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     
Sbjct: 392  RDEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +AI ++ R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 452  LQ-KAIQENPRLENHIKSSKINEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511  LGS-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNREKPLTLAAISLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  T  T G+FQ ES G+R+ L  ++P   EDI+A+ +LYRPGP++ I  +  RK
Sbjct: 570  EKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDIVAVDALYRPGPMEQIDTFIARK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKE I   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630  HGKEAIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++  F+ GA   G S++ A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K +YP 
Sbjct: 690  NEERIHFVEGARSKGYSESSANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKANYPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F+++ ++    N +KI ++  +A+ + I+++ PS+N     F++ G+N I YS   I+ 
Sbjct: 750  AFMSSLLSSVFGNDDKISQYITEAKNYGIRMLAPSINHSNYYFQMEGENAIRYSFRVIRK 809

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            V T     I+      PF    DFC R+  K L   +LE+LV +G  D FG  R  +L +
Sbjct: 810  VPTKFILEIINERKKAPFQDFFDFCERMPHKMLTETILEALVLSGCFDEFGEDRATVLAT 869

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYF 963
            +D + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y 
Sbjct: 870  IDAVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKAAPISIDEKLEKEKLYTGQYV 927

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            S HP+  Y+  L+ + I    +  +   G N R+A  V
Sbjct: 928  SAHPVSYYQTKLQNLAITRLADIHS---GKNYRVAVYV 962


>gi|328957332|ref|YP_004374718.1| DNA polymerase III subunit alpha [Carnobacterium sp. 17-4]
 gi|328673656|gb|AEB29702.1| DNA polymerase III subunit alpha [Carnobacterium sp. 17-4]
          Length = 1112

 Score =  875 bits (2262), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1029 (34%), Positives = 557/1029 (54%), Gaps = 48/1029 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV LQV SSYSLL+   S+  ++ K       AIA+TD N L+  ++F +      I+P
Sbjct: 2    SFVQLQVISSYSLLQSTTSIEELVVKAKERGYRAIALTDHNVLYGMVDFYKMCKKHQIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+           L +   G        SI+LL   A GY+ L+ L S   LL + +   
Sbjct: 62   IL----------GLTLDVGGVVNNEETYSIILLAKNARGYESLMALSSEKMLLTENE--- 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
             + +  + +  ++ LI +T G  G  +     +  + A K +  ++  F   + Y+ +Q 
Sbjct: 109  WLTIEHISQY-SQNLIAITPGEKGETESFLLQDEKKSAAKVVGKWQAAFPKQQFYLGIQL 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            H+   +  +  V +LA       VA  +  ++   D  +  VL A+    V+S +     
Sbjct: 168  HQKL-KVIQDAVNELANETGTLTVALQDIRYIDAADDFSTTVLRAINKGEVLSNQQEAE- 225

Query: 249  TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              ++YL   +E+  +F D  L +A + T E+A+     + +H  +LP+F   +       
Sbjct: 226  EGEYYLPESNEVEKLFKDNGLEQAAQQTNEVAKMIDADISLHQQLLPKFPLPK----DTV 281

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+ + + GL +R+ Q         + Y +RL++EL VI +M F  YFLIV D + +
Sbjct: 282  TTEFLKEQCLKGLTLRVVQ-------PDERYTKRLEYELAVIQKMGFEDYFLIVWDVMAY 334

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K  I  G GRGS AGS+ AY L ITD+DP+ ++LLFERFLN +R +MPD D+DF  +R
Sbjct: 335  AHKVKIVTGAGRGSAAGSLVAYLLEITDVDPIEYNLLFERFLNEERYTMPDIDLDFPDNR 394

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+E++ YV+NKYG   VAQI TFG+L AK AL+DV R   +  S+ +   K IP      
Sbjct: 395  REEILHYVKNKYGQNHVAQIATFGTLAAKMALKDVARVFGLSPSEANVWSKAIPKILGIT 454

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A  +    R+    +     L + ++++EGL RH STHAAGIVI D PL+Q VP+ 
Sbjct: 455  LE-KAYKESVTLRKLVEENDKNKLLFKTAKRIEGLPRHISTHAAGIVISDNPLTQYVPLQ 513

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
            +    ++ +TQ+ M  +E+ GL+K DFLGLK LT++  +L  +  + G ++DL  IP  D
Sbjct: 514  KG-GGEILLTQYPMGNVEEIGLLKMDFLGLKNLTIIDNTLKLVQRETGKRLDLLTIPMQD 572

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             ET  L      +GIFQ ES+G++  L  ++P  IEDI A+ +LYRPGP++ I  +  RK
Sbjct: 573  QETLQLFRQADMVGIFQFESTGIKNVLRRLEPSSIEDIAAVNALYRPGPMEQIDTFIKRK 632

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G   I   H  +  +L  T GV++YQEQVMQ+A  + GY+L +AD+LRRA+GKK K  +
Sbjct: 633  KGVLPIEYPHESLSEILAVTYGVMVYQEQVMQVAAKMGGYTLGQADILRRAIGKKQKSII 692

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            DK++  FISGA++ G +K +A+ +++ + +FA+YGFN+SHA AY+ I+YQ A++K HYP 
Sbjct: 693  DKERHHFISGANQLGYTKEVAMQVYDYIERFANYGFNRSHAVAYSFIAYQMAYLKAHYPN 752

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  A +   +++  K+K++  +A++  I+++PP++NT    F + +N I +   +IKG+
Sbjct: 753  AFFVALLNSALNSSAKMKEYIIEAKKRKIKVIPPNINTSFSGFTLTENNILFGFNSIKGL 812

Query: 846  GTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
                    I    +D  +  L DF  R+D K L    ++ L++AGA D F YSR  LL S
Sbjct: 813  RRDMIVEMIQNRKSDGKYLGLIDFLKRLDKKWLKPEYIKPLIYAGAFDQFDYSRGALLAS 872

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +D I +  +    N      ++F         K   E         + E E++ LG Y S
Sbjct: 873  VDGIVQSIKMSGNN-----IDLFELL------KPKYEFAPDLTLEEKLETEEQYLGTYLS 921

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            GHP + Y   LR+   K  E +     G   R+  MV +  + +T+KG  + +VT S+ +
Sbjct: 922  GHPTEKY-DQLRQW--KQVEYTSELTIGKTSRIIGMVKNVHKIRTKKGESMAFVTISDTS 978

Query: 1025 KEYEANFFP 1033
             +     FP
Sbjct: 979  GDCSLTLFP 987


>gi|330998194|ref|ZP_08322020.1| DNA polymerase III, alpha subunit [Paraprevotella xylaniphila YIT
            11841]
 gi|329568886|gb|EGG50684.1| DNA polymerase III, alpha subunit [Paraprevotella xylaniphila YIT
            11841]
          Length = 1316

 Score =  875 bits (2261), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/1059 (31%), Positives = 531/1059 (50%), Gaps = 98/1059 (9%)

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A     +PI GC++ +  +   ++    K        +++L     GY  L++LVS+ +
Sbjct: 142  AARKRLFKPIFGCEMYVAPR---RLDQMEKEKDGRRYHLIVLAKNETGYHNLVKLVSKSW 198

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
              D      R     L E   EGLI+ +   +G + R       + AE+ +  +K++FGD
Sbjct: 199  T-DGFYVRPRTDRFEL-EAHREGLIICSACIAGEVPRKILSGDLEGAEEAVQWYKRVFGD 256

Query: 181  RLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              Y+ LQRH   D             +   +++++LA  +++ LV TN+  F+ +ED EA
Sbjct: 257  NYYLELQRHEVKDPDQRANRETFPLQQRANARLIELARKYDVKLVCTNDCHFVEQEDAEA 316

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            HD L+ ++ +  +    R   +   + K R+EM  +F+D+PEAL NT +I  +  F    
Sbjct: 317  HDRLICLSTNRDLDDPKRMLYSKQEWFKTRAEMNEVFADVPEALANTCDICDQVEFYSID 376

Query: 288  HAPILPRFIEKE-------------CDDIQKE---------------------------- 306
            HAPI+P F   E              +D+ +E                            
Sbjct: 377  HAPIMPNFAIPEEFGTEEGYRKKYTDEDLFEEFTRDENGNVVLSREDAEQKVKKLGGCDK 436

Query: 307  ------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                  E + L      G                +  R+R++FEL+V+  M F GYFLIV
Sbjct: 437  LYRLKLEADYLAELTYIGAAKLYGDPL------PEHVRERINFELHVMKTMGFPGYFLIV 490

Query: 361  ADFIQWAK-KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
             D+I  A+ + N+ VGPGRGS AGS  AY L IT IDP+ + LLFERFLNPDR+S+PD D
Sbjct: 491  QDYINAARHELNVSVGPGRGSAAGSAVAYCLGITKIDPIEYDLLFERFLNPDRISLPDID 550

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  D R +V+ +V  KYG E+VA IIT+G++  K A++DV R  ++P    + LCKLI
Sbjct: 551  VDFDDDGRGKVLSWVTQKYGEEKVAHIITYGTMATKLAIKDVARVEKLPLDISNGLCKLI 610

Query: 480  PNDPAHPVSLQ--------AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAA 530
            P+      + +        AI+     ++A  + +P +   +  ++ LEG  R+   HA 
Sbjct: 611  PDKLPDDENGKSRKMNLPNAISCIPELQQAEASPNPLLRDTIRYARMLEGNVRNTGVHAC 670

Query: 531  GIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            G++I    +S  VP+     ++    L  TQ+    IE  GLIK DFLGLKTL+++++  
Sbjct: 671  GVIICRDDVSDWVPVSTAEDKETGEKLRCTQYEGSVIEDTGLIKMDFLGLKTLSIIKECQ 730

Query: 587  DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
              +    G+++D+  +   D  TY L     T+G FQ ES GM++ L  +QP   ED+IA
Sbjct: 731  ANIYDSLGMEIDVDALDITDPATYRLYCDGRTIGTFQFESPGMQKYLRELQPSTFEDLIA 790

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            + +LYRPGP+D I  + +RK G++ +    P ++  LK+T G+ +YQEQVM +++ L+ +
Sbjct: 791  MNALYRPGPMDYIPDFIDRKQGRKPVEYDIPCMEKYLKDTYGITVYQEQVMLLSRQLADF 850

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +  E+D LR+AMGKK+ E+++    +FI G  KNG    +   I+    KFA Y FNKSH
Sbjct: 851  TRGESDTLRKAMGKKLIEKLNHMYPKFIEGGKKNGHDPKVLEKIWADWKKFASYAFNKSH 910

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A  Y+ ++YQTA++K ++P +++AA M+  + N+  I K   + +   I  + P VN   
Sbjct: 911  ATCYSWVAYQTAYLKANFPAQYMAAVMSRSLANITDITKLMSECKSIGINTLGPDVNISR 970

Query: 826  VDFKVGDNRI-YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLE 883
              F V  +    + L A+KG+G +    I+ E  A  P+ ++ DF  RV S  + R  LE
Sbjct: 971  RKFSVDVDGNIRFGLGAVKGLGDSAVDAIVKEREAHGPYKNIFDFIQRVPSGAVKRNNLE 1030

Query: 884  SLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            SLV +GA DCF G +R Q           +D + +Y    + ++     ++F        
Sbjct: 1031 SLVLSGAFDCFEGITREQYFGVNAKGESFIDQLARYGSRYQTDKDAVQNSLFGDMDMVEI 1090

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GN 993
                + +    +S  R   E+ ++G Y S HPLD Y  IL+ +      +     +    
Sbjct: 1091 ATPEVPQAEPWSSLERLNKERDLVGIYLSAHPLDDYAVILQNVCNVHMADLKDLEQFVNM 1150

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++ L  MV + ++  ++ G   G VT  +    YE   F
Sbjct: 1151 DLTLGGMVTAVRKGISKTGKPYGIVTMEDFTGAYELALF 1189



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           FVHL VH+ YS+L+G  S++ ++DK   D    +AITD  N+ +  EF        
Sbjct: 3  DFVHLHVHTQYSILDGQASVSRLVDKAMKDGMRGMAITDHGNMMAIKEFFNYTTKKN 59


>gi|259503193|ref|ZP_05746095.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus antri
            DSM 16041]
 gi|259168850|gb|EEW53345.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus antri
            DSM 16041]
          Length = 1114

 Score =  873 bits (2255), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/1029 (33%), Positives = 545/1029 (52%), Gaps = 49/1029 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++V L+VHSSYSLL+    + +++         A+A+TD N L+ A++F   A  AG++P
Sbjct: 2    NYVPLEVHSSYSLLQSPTRIPDLVKAAKQRGYTALALTDENVLYGAVDFYNTARQAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q+   + D             +   + LL     GY+ L++L +R    +Q  +  
Sbjct: 62   LLGLQIMASLGD----------VAGSQLKLTLLAKNERGYRNLMDLSTRQQTTNQRAEPA 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I  + L  +  + +++L         +    N  +     +   K++ G  LY+ +  +
Sbjct: 112  TI--AELSPLLKDLVVILPV-------QLTVINLVRQGSDWIDPLKQIAGSSLYLGI--N 160

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
               D    + + + A    + L AT    +L+  D  A   L A+     ++  D     
Sbjct: 161  LQLDEVERASLQRFAQAAGVLLAATTPVDYLNASDLFAAKTLQAIGQGAQLTDLDAQVAA 220

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            T DHYL  R ++   +  + L  A+ NT  IA +C+  L+  AP+LP +     +     
Sbjct: 221  TGDHYLPARQQIEQAYQQAGLAAAIANTAAIADQCNVELKFQAPVLPHYQTPHGE----A 276

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L    +AGL+ R     +A GY A DYRQRLD EL VI RM F  YFLIV D + +
Sbjct: 277  PADYLHQLCLAGLKER----PVAAGYSAADYRQRLDHELAVIHRMGFDDYFLIVWDVMNF 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I   PGRGS AGS+ AYAL IT++DPL + LLFERFLNP+R  MPD D+D   +R
Sbjct: 333  AHRTKITTDPGRGSAAGSLVAYALAITEVDPLEYQLLFERFLNPERAQMPDIDLDIPDNR 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV +KYGHERVAQIITFG+L AK  LRDV R   +   +   L   +P   +  
Sbjct: 393  REEVLKYVHDKYGHERVAQIITFGTLAAKQVLRDVSRVFNLTKFETASLLDTLPKGGSFT 452

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  QA+ +  R +      P + +L  ++Q+LEGL RH STHAAGIV+   PL ++VP+ 
Sbjct: 453  LE-QALGESQRLKNLLNDQPKLRQLFRVAQQLEGLPRHYSTHAAGIVLSAAPLHEIVPLQ 511

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             +    L +TQF    +E  GL+K DFLGL+ L+++  ++  + QR  +  L  +   D 
Sbjct: 512  -EGSEGLLMTQFPKDTVEALGLLKMDFLGLRNLSIMDNTIQMIRQRKPQFSLDQVSLADP 570

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T G+FQ ES+G+R  L  + PD  EDI+A+ +LYRPGP++NI  +  RK 
Sbjct: 571  ATLRLFQRGQTDGVFQFESAGIRNVLTALHPDQFEDIVAVNALYRPGPMENITHFIARKR 630

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E I      + P+L  T G+++YQEQVMQ+A  ++G++L EAD+LRRAM KK K+ MD
Sbjct: 631  GQELIQLPDQSLAPILAPTYGILVYQEQVMQLASAMAGFTLGEADLLRRAMSKKKKQTMD 690

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              + +F++GA   G    +A  +F+ + +FA+YGFN+SHA AY+ ++++ A++K HYP E
Sbjct: 691  SMRAKFMAGAQAKGYQPALASQVFDYIDQFANYGFNRSHAVAYSKMAFEMAYLKCHYPTE 750

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  A +  E  NV K+++   +A++  +++  P +N     F V D +IY+ L AIKG+ 
Sbjct: 751  FYTALLNAE-SNVTKLRQHVTNAQKMGVKVNGPRINLSQAQFAVHDQQIYFGLTAIKGLR 809

Query: 847  TT-TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                A  + E  A+ PF  + D  +R+  K     VL  L++AGA D  GY+R ++++SL
Sbjct: 810  RDFVADLLQEREANGPFKDIRDLINRLPDKWRKEEVLTPLIYAGACDGLGYNRAEMVESL 869

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             N+    + +                G  S + ++        + R   E  +LG Y SG
Sbjct: 870  PNLLSGIELLAT---------LPGLSGDPSLQSSISHRQEYPLTTRLAKENELLGVYLSG 920

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPA 1024
            HP+  Y+ +  ++      E         + L       +   T+K  R + +V+ S+ +
Sbjct: 921  HPVSQYRQLASRLRSGRITEL---RPNQRVTLIVFTNRVKVIHTKKDHRPMAFVSASDES 977

Query: 1025 KEYEANFFP 1033
               +   FP
Sbjct: 978  GLVDVTVFP 986


>gi|330001663|ref|ZP_08304089.1| putative DNA polymerase III subunit alpha [Klebsiella sp. MS 92-3]
 gi|328537605|gb|EGF63825.1| putative DNA polymerase III subunit alpha [Klebsiella sp. MS 92-3]
          Length = 788

 Score =  873 bits (2255), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/799 (43%), Positives = 496/799 (62%), Gaps = 34/799 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+
Sbjct: 4   PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHGAGIK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PI+G    +          Q          + +L +   GYQ L  L+SR Y    G   
Sbjct: 64  PIVGADFHV----------QCDLLGDEFTELTVLAANNTGYQNLTLLISRAYQRGYGALG 113

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I   WL E   EGLI+L+GG  G +  +    +  + E+ +  +++ F DR ++ L R
Sbjct: 114 PWIDRDWLVE-HQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFLELIR 172

Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
               D        V LA    LP+VATN+  FL   D++AH++ +A+     +    RP 
Sbjct: 173 TGRQDEEAYLHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDPKRPR 232

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +       
Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287

Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E+ L  K+  GLE RL         +     +Y QRLD EL VI +M F GYFLIV +F
Sbjct: 288 TEDFLVMKSKEGLEERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLIVMEF 347

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468 GMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
           P+Y D +   PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D+
Sbjct: 527 PLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEGPLDI 586

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
           + IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + 
Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 659 V--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           +LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707 MLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772 ISYQTAWMKTHYPVEFLAA 790
           +SYQT W+K HYP EF+AA
Sbjct: 767 VSYQTLWLKAHYPAEFMAA 785


>gi|301066411|ref|YP_003788434.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang]
 gi|300438818|gb|ADK18584.1| DNA polymerase III, alpha subunit [Lactobacillus casei str. Zhang]
          Length = 1098

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/1028 (31%), Positives = 527/1028 (51%), Gaps = 59/1028 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L++++    +    AIA+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q+ ID                    ++++    +GY +L+++ +++ L        
Sbjct: 62   LLGMQIAIDD-----------------AKLLVIAKNNQGYHQLLKISTQIMLATS----- 99

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               +++   +   GL+ +T   S P   A   N    A   L        + +YV L   
Sbjct: 100  --PVAFADLLPLTGLVAITLPDS-PFSAAVVANDHDRAVAFLQELDNKQPEAVYVGL--- 153

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
               + + ++ +   A + +L L+A  N L+    D     V+ A+   + ++ +D     
Sbjct: 154  --DEAHLDTPLPAFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRDPVLTD 211

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +LK  ++  + F  + L  A++NT +IA +    +    P LP +   +    Q  
Sbjct: 212  AGPWWLKPPADASAPFVAAGLQAAVDNTAQIADQTDVTITFKQPQLPHYQTPD----QLA 267

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ L   A  GL  R     I        Y+QRL +EL+VI +M F+ YFL+V D + +
Sbjct: 268  SKDYLTKLAQEGLANRFHDQPI-----PTTYQQRLQYELDVIIKMGFADYFLVVWDVMNY 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K NI  G GRGS AGS+ +YAL IT++DP+ + LLFERFLNP R  MPD D+D   +R
Sbjct: 323  AHKVNIMTGAGRGSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLDIPDNR 382

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E+I+YV +KYG   +AQIITFG+  AK A+RDV R   M   + +   + IPN     
Sbjct: 383  RGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPNLLHMD 442

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A       +      P    L + +  LEGL RH STHAAGIV+ + PL+  V + 
Sbjct: 443  LKT-AYDQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                  L  TQ     +E  GL+K DFLGLK L +L  +  F+ +      D   IP +D
Sbjct: 502  -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPKQIPLND 560

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G++  L  ++P   ED++A+ +LYRPGP++NI  +  RK
Sbjct: 561  QPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENIDTFIARK 620

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E I    P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    +
Sbjct: 621  NGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSKKKSSVL 680

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+++++  A++K H P 
Sbjct: 681  AAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYLKVHDPA 740

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F AA M   M+N+ K++ + Q+A+   + ++ P +NT    FK+ D +I + L ++KG+
Sbjct: 741  AFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGLLSVKGM 800

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                +  I  A  + PF    D   R++ K L     + L+ AGA D F  +R Q + +L
Sbjct: 801  RRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRAQTIANL 860

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D +    +    +       +F       + K  +       +  R E E  VLG Y SG
Sbjct: 861  DELINSVKLAGND-----VGLF----SVLAPKPIV--VPEMPAGERLEEEANVLGVYLSG 909

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+D Y P+  +  +    +      G  + +  +V   ++ +T+ G  + +V   +   
Sbjct: 910  HPVDKYAPLKTQYTLVNVVDLAE---GRTVDILLLVRHIKRIRTKTGKPMAFVDGQDATG 966

Query: 1026 EYEANFFP 1033
                  FP
Sbjct: 967  TVSLTVFP 974


>gi|239631558|ref|ZP_04674589.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239526023|gb|EEQ65024.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 1098

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/1028 (31%), Positives = 527/1028 (51%), Gaps = 59/1028 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L++++    +    AIA+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q+ ID                    ++++    +GY +L+++ +++ L        
Sbjct: 62   LLGMQIAIDD-----------------AKLLVIAKNNQGYHQLLKISTQIMLATS----- 99

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               +++   +   GL+ +T   S P   A   N    A   L        + +YV L   
Sbjct: 100  --PVAFADLLPLTGLVAITLPDS-PFSAAVVANDHDRAVAFLQELDNKQPEAVYVGL--- 153

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
               + + ++ +   A + +L L+A  N L+    D     V+ A+   + ++ +D     
Sbjct: 154  --DEAHLDTPLPAFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRDPVLTD 211

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +LK  ++  + F  + L  A++NT +IA +    +    P LP +   +    Q  
Sbjct: 212  AGPWWLKPPADASAPFVAAGLQAAVDNTAQIADQTDVTITFKQPQLPHYQTPD----QLA 267

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ L   A  GL  R     I        Y+QRL +EL+VI +M F+ YFL+V D + +
Sbjct: 268  SKDYLTKLAQEGLANRFHDQPI-----PTTYQQRLQYELDVIIKMGFADYFLVVWDVMNY 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K NI  G GRGS AGS+ +YAL IT++DP+ + LLFERFLNP R  MPD D+D   +R
Sbjct: 323  AHKVNIMTGAGRGSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLDIPDNR 382

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E+I+YV +KYG   +AQIITFG+  AK A+RDV R   M   + +   + IPN     
Sbjct: 383  RGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPNLLHMD 442

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A       +      P    L + +  LEGL RH STHAAGIV+ + PL+  V + 
Sbjct: 443  LKT-AYDQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                  L  TQ     +E  GL+K DFLGLK L +L  +  F+ +      D   IP +D
Sbjct: 502  -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPKQIPLND 560

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G++  L  ++P   ED++A+ +LYRPGP++NI  +  RK
Sbjct: 561  QPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENIDTFIARK 620

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E I    P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    +
Sbjct: 621  NGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSKKKSSVL 680

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+++++  A++K H P 
Sbjct: 681  AAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYLKVHDPA 740

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F AA M   M+N+ K++ + Q+A+   + ++ P +NT    FK+ D +I + L ++KG+
Sbjct: 741  AFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGLLSVKGM 800

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                +  I  A  + PF    D   R++ K L     + L+ AGA D F  +R Q + +L
Sbjct: 801  RRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRAQTIANL 860

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D +    +    +       +F       + K  +       +  R E E  VLG Y SG
Sbjct: 861  DELINSVKLAGND-----VGLF----SVLAPKPIV--VPEMPAGERLEEEANVLGVYLSG 909

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+D Y P+  +  +    +      G  + +  +V   ++ +T+ G  + +V   +   
Sbjct: 910  HPVDKYAPLKTQYTLVNVVDLAE---GRTVDILLLVRHIKRIRTKTGKPMAFVDGQDATG 966

Query: 1026 EYEANFFP 1033
                  FP
Sbjct: 967  TVSLTVFP 974


>gi|167033740|ref|YP_001668971.1| error-prone DNA polymerase [Pseudomonas putida GB-1]
 gi|166860228|gb|ABY98635.1| DNA polymerase III, alpha subunit [Pseudomonas putida GB-1]
          Length = 1026

 Score =  871 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/1039 (27%), Positives = 467/1039 (44%), Gaps = 82/1039 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P +  L   S++S   GA S + +  +       A+AITD   L   +   Q A A  
Sbjct: 2    NTPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKAHQ 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ I+G ++ +                   P +VLLV    GYQ L  L++R     + K
Sbjct: 62   LRLIVGSEVQLHDG----------------PKLVLLVENLTGYQNLCALITRARRRAE-K 104

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               ++    LQ+   +GL+ L       +D+A                + +F +RL++ +
Sbjct: 105  GEYQLFRDDLQQ-HHQGLLALWVADDS-VDKATG-----------EWLRSVFAERLWLAV 151

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              HRG D   R  ++  LA    +  VA  +            D + A+     V++  R
Sbjct: 152  HLHRGCDDAMRLQRLQALAADVGVRAVACGDVHMHVRGRRALQDCMTAIRQHCQVNEAGR 211

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  + +L++++++  ++      L  T+ IA+RC F L       P  +  E     
Sbjct: 212  FLFANGERHLRSQAQLGELYP--ANLLAETLTIAQRCQFDLSELKYQYPCELVPEG---- 265

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR+    GL +R   G   K       R  L  EL +I  + +  YFL V D +
Sbjct: 266  HTPASWLRDLCEQGLPLRWPNGPSEK------VRDVLAKELALIEELGYESYFLTVHDIV 319

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+   I +  GRGS A SV  + L IT++DP+   LLFERFL+ +R   PD D+DF  
Sbjct: 320  AFARSQRI-LCQGRGSAANSVVCFVLGITELDPMEHHLLFERFLSRERNEPPDIDVDFEH 378

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVI+YV  +YG  R A      +  A  A+RDV R L +P  QVD L K       
Sbjct: 379  DRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARVLGLPADQVDALAKCCGRWSD 438

Query: 485  HPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                   I D+ R  EA      PS+ R+L ++ +L G  RH S H  G VI  +PL QL
Sbjct: 439  R------IPDEQRLAEAGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQPLDQL 492

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLI 601
            VP+     +   V Q++   ++  GL+K D L L  L+ L++  D L   RG ++ L+ I
Sbjct: 493  VPVENAAMAQRTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLLQRHRGRQLTLATI 552

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D + 
Sbjct: 553  PSEDPATYAMISRAETMGVFQIESRAQMAMLPRLRPTTFYDLVIEVAIVRPGPIQGDMVH 612

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+  +E +      +  + + T GV ++QEQVM++A + + Y+  EAD LRR+M  
Sbjct: 613  PYLRRRLKQEPVTYPSAQLKAVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRRSMAA 672

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    ++  +ER + G  +NG     A  IFE +  F  YGF +SHAA++A++ Y ++W
Sbjct: 673  WKRHGGLEPHRERLVQGMLRNGYELAFAQRIFEQIKGFGSYGFPESHAASFALLCYASSW 732

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----- 833
            +K H P  F  A +           +  Q+AR+  I++ P  V     D  +  +     
Sbjct: 733  LKCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSEWDCTLEPDEHGTL 792

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I   L  ++G+    AR + +A A +P+  +ED C R     L+ R    L  AGAL  
Sbjct: 793  AIRMGLRLVRGLAEADARRLQQARAQRPWRDVEDLCLRA---GLDSRARARLADAGALRA 849

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R Q    +                    +FA  +      + L   +V+       
Sbjct: 850  LASDRHQARWQV------------AAVQPQLPLFADVQALPEVAVALPAPTVDED---LV 894

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             + + LG     HPL + +  LR +G +   E      G+ I +A +VV +Q+ +T  G 
Sbjct: 895  ADYQTLGTTLGPHPLALLRSRLRALGCRSSSELQGVEHGDTIAVAGLVVGRQRPQTASG- 953

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + +VT  +         +
Sbjct: 954  -VTFVTLEDEHGMVNVVVW 971


>gi|330859615|emb|CBX69955.1| DNA polymerase III subunit alpha [Yersinia enterocolitica W22703]
          Length = 921

 Score =  870 bits (2249), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/798 (42%), Positives = 487/798 (61%), Gaps = 25/798 (3%)

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            +++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   +        E+ L  
Sbjct: 1    MRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM-----STEDFLVE 55

Query: 314  KAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            K+  GLE RL         +      Y +RL+ EL VI +M F GYFLIV +FIQW+K N
Sbjct: 56   KSKQGLEERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDN 115

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD V
Sbjct: 116  GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLV 175

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +
Sbjct: 176  IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-K 234

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D  
Sbjct: 235  AFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAE 294

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDD 605
             + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D++ IP DD
Sbjct: 295  GNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLDD 354

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
             +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + +   + +
Sbjct: 355  KKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFID 414

Query: 664  RKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
            RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD+LRRAMG
Sbjct: 415  RKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMG 474

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W
Sbjct: 475  KKNPAEMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 534

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-Y 837
            +K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V D     Y
Sbjct: 535  LKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVY 594

Query: 838  SLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE L+ +GA D  G 
Sbjct: 595  GIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSGAFDRLGP 654

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENE 955
             R  L+ SL    K A    K       ++F          + +          +  + E
Sbjct: 655  HRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQIVLDGE 714

Query: 956  QRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +  LG Y +GHP+  Y   + +  G    ++   T RG     A +V++ +   T++G+R
Sbjct: 715  RETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIAARIMVTKRGNR 774

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            IG  T  + +   E   F
Sbjct: 775  IGICTLDDRSGRLEVMLF 792


>gi|262037946|ref|ZP_06011366.1| DNA polymerase III subunit alpha [Leptotrichia goodfellowii F0264]
 gi|261748024|gb|EEY35443.1| DNA polymerase III subunit alpha [Leptotrichia goodfellowii F0264]
          Length = 1151

 Score =  870 bits (2249), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1047 (33%), Positives = 572/1047 (54%), Gaps = 48/1047 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL+VH+ YSLLEG   +   +++        +A+TDT ++F  +EF +K   +GI+P+I
Sbjct: 6    VHLKVHTEYSLLEGVGKIEEYVERAKFMGIKTLAVTDT-SMFGVIEFYKKCIKSGIKPVI 64

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +D                   S+ LL    +GY+ L +L   +      ++  +I
Sbjct: 65   GLEVFLD-----------GIVSEGEYSLTLLAKNKKGYRNLSKLS-SLSYSRFNRRRNKI 112

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L E  +  L +L+GG    I +         A+K  +   K F +  ++ +   + 
Sbjct: 113  KYEELLEYSS-DLYILSGGIHSEIIKGISEYKYPEAKKVAVKLAKDFKENFFLEVPAVKR 171

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             +  R+S + ++     +  + TN+  + ++ +     ++ ++     +          D
Sbjct: 172  LESVRKS-LKEMIKEISVGYLITNDVYYPNKGEAVLQKIMSSIKEGNKIETVQNDIFYDD 230

Query: 252  HYLKNRSEMVSIF----SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             YLK+  E+   F        E ++NTV +A  C+   +      P +   E       E
Sbjct: 231  LYLKSFDEIKESFLQDEEFFDEGMKNTVILAENCNTDFEFDVFKFPEYELPEGI----SE 286

Query: 308  ENELRNKAVAGLEVRLAQGAIAK--------------GYHAQDYRQRLDFELNVIARMKF 353
               +R     G+  +  +  I                    +D  +R D+EL VI  M +
Sbjct: 287  SFYIRKLVYEGIAKKYLKENIEITTEDQENEIRKKLIAKDREDVFKRADYELEVINSMGY 346

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
            +GYF+IV DFI++AK++ + VGPGRGS AGS+ +YAL IT+IDPL+++L+FERFLNP+R+
Sbjct: 347  NGYFIIVWDFIKFAKESGVYVGPGRGSAAGSLVSYALNITEIDPLKYNLIFERFLNPERI 406

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD DIDF Q++R+ VI YV NKYG++ VA IITFG+L+A+AA+RDVGR L +   +VD
Sbjct: 407  SMPDIDIDFDQEQREIVIDYVLNKYGNKYVAHIITFGTLKARAAIRDVGRVLNVSLKKVD 466

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            +  KLIP +       +A+      RE   +D  +  +++ S K+EG  RHAS HAAG+V
Sbjct: 467  KAAKLIPFNMDLE---KALDSVGSLREMYNSDNEIKTMIDYSLKIEGRVRHASVHAAGVV 523

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQR 592
            I    L + +P Y D ++ +  TQ+ MK +E+ G++K DFLGLK LT+L+K+++ +   +
Sbjct: 524  ISKDVLDEEIPTYSDGKTPILSTQYQMKELEELGILKMDFLGLKNLTILRKTIENIEKNK 583

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G  +    I  ++ + Y L+T   TLGIFQ ES G+R+ ++ ++ +  EDI AL++LYRP
Sbjct: 584  GEILRTENINLENKKAYKLMTEADTLGIFQCESPGIRKLMKKLKIEKFEDITALLALYRP 643

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+ + +V  +   KN + KI      +  +L+ET GVI+YQEQVM+IA  ++ YSL EA
Sbjct: 644  GPLQSGMVEDFIAAKNAEAKIKYPDESLKEILEETYGVILYQEQVMKIASEMAKYSLGEA 703

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D LRRA+GKKI   +++ +E+F+  A +N +S+  A  I+ L+ KF  YGFNKSH+AAYA
Sbjct: 704  DQLRRAIGKKIPAIIEENREKFVKKAQENNVSREKADRIYNLIDKFGGYGFNKSHSAAYA 763

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +I Y TA+ K +YP+EF AA MT EM N+E++  F  +AR   I+I+ P VN    DFKV
Sbjct: 764  LIVYWTAYFKANYPLEFFAAIMTTEMYNIERLSLFINEARGKGIEILVPDVNLSDYDFKV 823

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             ++ I + L AIKGVG    R IME      F S EDF  R+  + LN++ LESL+ +G+
Sbjct: 824  EESGIRFGLVAIKGVGGNFVREIMEERESGIFVSYEDFVYRMKQRGLNKKQLESLILSGS 883

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            LD    +R +  +S++ + +++Q   ++  +    +F  +     D   ++K    + S+
Sbjct: 884  LDNLDGNRKEKTESINKVMEWSQKKYESEEDLQMILFGGKSKKIGD-FQMDKTEEYSQSI 942

Query: 951  RFENEQRVLGFYFSGHPLDV---YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +NE+  LG Y S HPLD    Y  ++    I   E    + + + IR+  ++ +  + 
Sbjct: 943  LLKNEREYLGIYVSSHPLDEKKDYFEMIEHTKISETEVRNKSGKFDKIRIMGVIKNLNKI 1002

Query: 1008 KTR-KGSRIGWVTFSEPAKEYEANFFP 1033
             T+  G  +      +     E   FP
Sbjct: 1003 VTKLSGEPMAKFELEDATGAMEVICFP 1029


>gi|227535154|ref|ZP_03965203.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei
            ATCC 25302]
 gi|227187199|gb|EEI67266.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei
            ATCC 25302]
          Length = 1098

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/1028 (31%), Positives = 526/1028 (51%), Gaps = 59/1028 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L++++    +    AIA+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q+ ID                    ++++    +GY +L+++ +++ L        
Sbjct: 62   LLGMQIAIDD-----------------AKLLVIAKNNQGYHQLLKISTQIMLATS----- 99

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               +++   +   GL+ +T   S P   A   N    A   L        + +YV L   
Sbjct: 100  --PVAFADLLPLTGLVAITLPDS-PFSAAVAANDHDRAVAFLQELDNKQPEAVYVGL--- 153

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
               + + ++ +   A + +L L+A  N L+    D     V+ A+   + ++ +D     
Sbjct: 154  --DEAHLDTPLPAFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRDPVLTD 211

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +LK  ++  + F  + L  A++N  +IA +    +    P LP +   +    Q  
Sbjct: 212  AGPWWLKPPADASAPFVAAGLQAAVDNAAQIADQTDVTITFKQPQLPHYQTPD----QLA 267

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ L   A  GL  R     I        Y+QRL +EL+VI +M F+ YFL+V D + +
Sbjct: 268  SKDYLTKLAQEGLANRFHDQPI-----PTTYQQRLQYELDVIIKMGFADYFLVVWDVMNY 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K NI  G GRGS AGS+ +YAL IT++DP+ + LLFERFLNP R  MPD D+D   +R
Sbjct: 323  AHKVNIMTGAGRGSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLDIPDNR 382

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E+I+YV +KYG   +AQIITFG+  AK A+RDV R   M   + +   + IPN     
Sbjct: 383  RGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPNLLHMD 442

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A       +      P    L + +  LEGL RH STHAAGIV+ + PL+  V + 
Sbjct: 443  LKT-AYDQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                  L  TQ     +E  GL+K DFLGLK L +L  +  F+ +      D   IP +D
Sbjct: 502  -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPKQIPLND 560

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G++  L  ++P   ED++A+ +LYRPGP++NI  +  RK
Sbjct: 561  QPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENIDTFIARK 620

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E I    P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    +
Sbjct: 621  NGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSKKKSSVL 680

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+++++  A++K H P 
Sbjct: 681  AAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYLKVHDPA 740

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F AA M   M+N+ K++ + Q+A+   + ++ P +NT    FK+ D +I + L ++KG+
Sbjct: 741  AFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGLLSVKGM 800

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                +  I  A  + PF    D   R++ K L     + L+ AGA D F  +R Q + +L
Sbjct: 801  RRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRAQTIANL 860

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D +    +    +       +F       + K  +       +  R E E  VLG Y SG
Sbjct: 861  DELINSVKLAGND-----VGLF----SVLAPKPIV--VPEMPAGERLEEEANVLGVYLSG 909

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+D Y P+  +  +    +      G  + +  +V   ++ +T+ G  + +V   +   
Sbjct: 910  HPVDKYAPLKTQYTLVNVVDLAE---GRTVDILLLVRHIKRIRTKTGKPMAFVDGQDATG 966

Query: 1026 EYEANFFP 1033
                  FP
Sbjct: 967  TVSLTVFP 974


>gi|293400488|ref|ZP_06644633.1| DNA polymerase III, alpha subunit [Erysipelotrichaceae bacterium
            5_2_54FAA]
 gi|291305514|gb|EFE46758.1| DNA polymerase III, alpha subunit [Erysipelotrichaceae bacterium
            5_2_54FAA]
          Length = 1038

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/1024 (33%), Positives = 572/1024 (55%), Gaps = 42/1024 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL V S Y+LL+  +++  I+D        A+A+ D   +  A+ F   A  A IQPI 
Sbjct: 14   VHLHVRSCYTLLQSTMTIQKIVDSAKRYGYHAVALCDKEVMHGAMAFYHMAKKADIQPIF 73

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++++  ++              +   +LL     GYQ L++L + +   +   +  ++
Sbjct: 74   GMEVEVAEEEG-------------IFGFILLAKNDNGYQALMKLSTMLNTKE---RKEQL 117

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
             +  L    T+  ++LT G    ++        +     L   K+ F    YV + R+  
Sbjct: 118  TMEELLTY-TKDCVVLTNGDQNQMETYLIKEEMEHLAAFLQRCKESFA-TFYVAISRNDS 175

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
               R +   +  L    ++P  A +   F   +  E++  L A+     +  K     +P
Sbjct: 176  PLLRQKNRLLKALCQQMQIPTTALSRIYFDEAKGEESYKTLCAINQGVSLDDK-MLNYSP 234

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              Y +++ EM  ++ +  + L  + +IA+ C   ++    ILP+F  +         E  
Sbjct: 235  KRYFRSKEEMAELYDE--DDLAASDKIAQMCHVEMKFPKAILPKFKNRYGM----SSEEF 288

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GLE R+    I        Y QRL +EL+VI  M ++ YFLIV DFI++AK  
Sbjct: 289  LRRLCHKGLEKRMQYQKI-----PSVYEQRLRYELDVIISMGYADYFLIVWDFIRFAKTQ 343

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I +GPGRGS AGS+ AY L IT  DP+R+ LLFERFLNP+R+SMPD D DF  DRRDEV
Sbjct: 344  DIYIGPGRGSAAGSLVAYCLGITHADPIRYHLLFERFLNPERVSMPDIDTDFPDDRRDEV 403

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I YV + YG   V+ IITF +L AK  LRDVG+A+Q+   Q+D LCKL+PN P   +   
Sbjct: 404  IAYVHDLYGEHHVSHIITFNTLAAKQVLRDVGKAMQVAPRQIDLLCKLVPNRPKVTLQ-D 462

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +  +F++   +   + +L  I+ +LEGL RH+S HAAGI++ +  +S + P+  DV 
Sbjct: 463  AYQERVKFKQMINSGEQMRKLFAIALQLEGLPRHSSLHAAGIILSNEDISNVCPLI-DVD 521

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
              +  TQF M+++E+ GLIK DFLGL+ LT++ + +  +  +  ++D+  IP DD +TY 
Sbjct: 522  EGMCATQFTMEYLEELGLIKMDFLGLRNLTIIDEIVHQINAKEKRLDIMHIPLDDAKTYQ 581

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L+ +  T+G+FQLES GM+  +  M+P C EDI+A V+L+RPGP++NI  Y   +   EK
Sbjct: 582  LIRSVDTVGVFQLESEGMKNLIRKMKPTCFEDIVATVALFRPGPMENIPRYLECRTHPEK 641

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP + P+L+ T GV+IYQEQVMQIAQ ++G+SL +AD LR+A+ KK  +E+   +E
Sbjct: 642  VDYLHPDLKPILENTYGVMIYQEQVMQIAQTMAGFSLGKADNLRKAISKKKGKELQSLRE 701

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ GA + G  +++A+ ++EL+ KFA+YGFN+SH+ AY +I+YQ A++K + P+ F  A
Sbjct: 702  DFVEGAKQKGYEESLAIRVYELIMKFANYGFNRSHSVAYGMIAYQMAYLKANAPLYFFTA 761

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +   + +  K  ++  +AR+ +I+I+ PS+N     +++  N + + L  IKG+G   +
Sbjct: 762  LLNSVIGSETKTSEYVFEARKRHIEILLPSINQSSNQYEIEGNALRFPLVGIKGIGNAVS 821

Query: 851  RHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              ++E    +  F    DF +R++ +KL ++ +E L+FAGALD F  +R  LL SLD+  
Sbjct: 822  NVLIEERQKRGNFKDFFDFVARMEGQKLGKKTMEMLIFAGALDEFKINRSSLLASLDDAI 881

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +Y   V+    ++   +F  E  +     +L+    EN++ R E E+ +LGFY S HP+ 
Sbjct: 882  RYGDLVKIEDQDQI--LFDFELVSKPALTSLK----ENAAQRAEREKEMLGFYLSAHPIT 935

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +  +++ G+       + +  + ++   MV   +Q +T+ G  + +V  ++   +++ 
Sbjct: 936  ALRDKMQQ-GLVPLIALTSHLH-SYVKFICMVERTKQFRTKNGHLMMFVVGADETGKFDL 993

Query: 1030 NFFP 1033
               P
Sbjct: 994  VCMP 997


>gi|148547815|ref|YP_001267917.1| error-prone DNA polymerase [Pseudomonas putida F1]
 gi|148511873|gb|ABQ78733.1| DNA polymerase III, alpha subunit [Pseudomonas putida F1]
          Length = 1026

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/1039 (27%), Positives = 461/1039 (44%), Gaps = 82/1039 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P +  L   S++S   GA S + +  +       A+AITD   L   +   Q A    
Sbjct: 2    NTPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVHQ 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ I+G                 +      P +VLLV    GYQ L  L++R     + K
Sbjct: 62   LRLIVGS----------------EVQLCDGPKLVLLVENLTGYQNLCALITRARRRAE-K 104

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             + ++    L       L +     SG                     + +F +RL++ +
Sbjct: 105  GAYQLFRDDLLLHHQGLLALWVAADSGDTATG-------------AWLRSVFAERLWLAV 151

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              HRG D   R  ++  LA    +  VA  +            D + A+     VS+  R
Sbjct: 152  HLHRGSDDAMRLQRLRALAADVGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVSEAGR 211

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  + +L++++++  ++    + L  T+ IARRC F L       PR +  E     
Sbjct: 212  FLFANGERHLRSQAQLAELYP--LDLLAETLVIARRCQFDLSELNYQYPRELVPEG---- 265

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR     G+ +R   G   K       R  L  EL +I  + +  YFL V D +
Sbjct: 266  HTPASWLRELCEQGMPLRWPGGPSGK------VRAVLAKELGLIEELGYESYFLTVHDIV 319

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+   I +  GRGS A SV  + L IT++DP++  LLFERFL+ +R   PD D+DF  
Sbjct: 320  AFARSQRI-LCQGRGSAANSVVCFVLGITELDPMKHHLLFERFLSRERNEPPDIDVDFEH 378

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVI+YV  +YG  R A      +  A  A+RDV R L +P  QVD L K       
Sbjct: 379  DRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARVLGLPADQVDALAKCCGRWSD 438

Query: 485  HPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                   I DD R  EA      PS+ R+L ++ +L G  RH S H  G VI  +PL QL
Sbjct: 439  R------IPDDQRLAEAGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQPLDQL 492

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            VP+      +  V Q++   ++  GL+K D L L  L+ L++  D L   RG  + L+ I
Sbjct: 493  VPVENAAMPERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLLQHHRGRHLTLATI 552

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D + 
Sbjct: 553  PSEDPATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAIVRPGPIQGDMVH 612

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+  +E +    P +  + + T GV ++QEQVM++A + + Y+  EAD LRR+M  
Sbjct: 613  PYLRRRLKQEPVTYPSPQLKEVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRRSMAA 672

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    ++  +ER + G  +NG +   A  IFE +  F  YGF +SHAA++A++ Y ++W
Sbjct: 673  WKRHGGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHAASFALLCYASSW 732

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI--- 835
            +K H P  F  A +           +  Q+AR+  I++ P  V     D  +  +     
Sbjct: 733  LKCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPDAEGTL 792

Query: 836  --YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
                 L  ++G+  T AR + +A A +P+ ++ED C R     L+ R    L   GAL  
Sbjct: 793  AIRMGLRLVRGLAETDARRVQQARAQRPWRNVEDLCLRA---GLDARARARLADGGALRA 849

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R Q    +                    +FA  +    + + L    V        
Sbjct: 850  LASDRHQARWQV------------AAVQPQLPLFADVQALPEEPVQLP---VPTVGEDLM 894

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             + + LG     HPL + +  LR +G +   E      G+NI +A +VV +Q+ +T  G 
Sbjct: 895  ADYQTLGTTLGPHPLALLRSRLRALGCRSSSELQGVEHGDNIAVAGLVVGRQRPQTASG- 953

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + +VT  +         +
Sbjct: 954  -VTFVTLEDEHGMVNVVVW 971


>gi|313498875|gb|ADR60241.1| DnaE2 [Pseudomonas putida BIRD-1]
          Length = 1026

 Score =  869 bits (2246), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/1037 (27%), Positives = 460/1037 (44%), Gaps = 82/1037 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S   GA S + +  +       A+AITD   L   +   Q A    ++
Sbjct: 4    PGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVHQLR 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G                 +      P +VLLV    GYQ L  L++R     + K +
Sbjct: 64   LIVGS----------------EVQLCDGPKLVLLVENLTGYQNLCALITRARRRAE-KGA 106

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++    L       L +     SG                     + +F +RL++ +  
Sbjct: 107  YQLFRDDLLLHHQGLLALWVAADSGDTATGV-------------WLRSVFAERLWLAVHL 153

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HRG D   R  ++  LA    +  VA  +            D + A+     VS+  R  
Sbjct: 154  HRGSDDAMRLQRLRALAADVGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVSEAGRFL 213

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++++++  ++    + L  T+ IARRC F L       PR +  E       
Sbjct: 214  FANGERHLRSQAQLAELYP--LDLLAETLVIARRCQFDLSELNYQYPRELVPEG----HT 267

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     G+ +R   G   K       R  L  EL +I  + +  YFL V D + +
Sbjct: 268  PASWLRELCEQGMPLRWPDGPSGK------VRAVLAKELGLIEELGYESYFLTVHDIVAF 321

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I +  GRGS A SV  + L IT++DP++  LLFERFL+ +R   PD D+DF  DR
Sbjct: 322  ARSQRI-LCQGRGSAANSVVCFVLGITELDPMKHHLLFERFLSRERNEPPDIDVDFEHDR 380

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+YV  +YG  R A      +  A  A+RDV R L +P  QVD L K         
Sbjct: 381  REEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARVLGLPADQVDALAKCCGRWSDR- 439

Query: 487  VSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 I DD R  EA      PS+ R+L ++ +L G  RH S H  G VI  +PL QLVP
Sbjct: 440  -----IPDDQRLAEAGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQPLDQLVP 494

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPF 603
            +      +  V Q++   ++  GL+K D L L  L+ L++  D L   RG  + L+ IP 
Sbjct: 495  VENAAMPERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLLQHHRGRHLTLATIPS 554

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y
Sbjct: 555  EDPATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAIVRPGPIQGDMVHPY 614

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R+  +E +    P +  + + T GV ++QEQVM++A + + Y+  EAD LRR+M   K
Sbjct: 615  LRRRLKQEPVTYPSPQLKEVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRRSMAAWK 674

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                ++  +ER + G  +NG +   A  IFE +  F  YGF +SHAA++A++ Y ++W+K
Sbjct: 675  RHGGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHAASFALLCYASSWLK 734

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RI 835
             H P  F  A +           +  Q+AR+  I++ P  V     D  +  +      I
Sbjct: 735  CHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPDAQGTLAI 794

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  ++G+    AR + +A A +P+ ++ED C R     L+ R    L   GAL    
Sbjct: 795  RMGLRLVRGLAEADARRVQQARAQRPWRNVEDLCLRA---GLDARARARLADGGALRALA 851

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R Q    +                    +FA  +    + + L    V         +
Sbjct: 852  SDRHQARWQV------------AAVQPQLPLFADVQALPEEPVQLP---VPTVGEDLMAD 896

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
             + LG     HPL + +  LR +G +   E      G+NI +A +VV +Q+ +T  G  +
Sbjct: 897  YQTLGTTLGPHPLALLRSRLRALGCRSSSELQGVEHGDNIAVAGLVVGRQRPQTASG--V 954

Query: 1016 GWVTFSEPAKEYEANFF 1032
             +VT  +         +
Sbjct: 955  TFVTLEDEHGMVNVVVW 971


>gi|116333410|ref|YP_794937.1| DNA polymerase III, alpha subunit [Lactobacillus brevis ATCC 367]
 gi|116098757|gb|ABJ63906.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus brevis
            ATCC 367]
          Length = 1121

 Score =  868 bits (2243), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1028 (33%), Positives = 539/1028 (52%), Gaps = 47/1028 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV LQV S+YSLL+    +++++         A+A+ D N ++ A+ F      A I+P+
Sbjct: 2    FVPLQVFSTYSLLQSTNRIDDLVQTAKKRGYTALALADKNVMYGAVAFYNACRQADIKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +           L +T QG          V L     GYQ+L++L S  Y +  G     
Sbjct: 62   L----------GLTLTAQGLNDATQAYDWVFLAQNFTGYQQLMQL-STAYQVGGG----P 106

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L+ L +  ++  ++        I      +    A++ L         +L + +    
Sbjct: 107  VDLTQLTKNLSQLTMI--APLDSEIHTLVANDQLAPAQQILHQLNDWSVGQLAIGVSP-- 162

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVT 249
                     +  L+     PLVA +   +L+ +D+ A  VL A+     +S      +V 
Sbjct: 163  DLTAVSRDHLQSLSQATTTPLVALSPVAYLNRDDHFAVTVLRAIDAGETISDPTTEQQVQ 222

Query: 250  PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              H+L+  +E    F+++    A+  T  IA   +  LQ   P LP+F        Q+  
Sbjct: 223  GTHWLRPAAEETQRFANVGLTAAVTMTASIAAASTVTLQFQQPQLPQFPTPN----QENS 278

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR + VAGL+ RL    I        Y+QRLD EL VI RM F  YFLI+ D + +A
Sbjct: 279  RDYLRERCVAGLKRRLTANHITDATP---YQQRLDHELGVIHRMGFDDYFLIIWDVMNFA 335

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             + NI  GPGRGS AGS+ AY L IT++DPL + LLFERFLN +R  MPD D+D   +RR
Sbjct: 336  HQANIQTGPGRGSAAGSLVAYVLAITEVDPLAYDLLFERFLNEERAQMPDIDLDIPDNRR 395

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            ++V++YV +KYGHERVAQIITFG+L AKAALRDVGR L M   ++      IP +    +
Sbjct: 396  EQVLQYVHDKYGHERVAQIITFGTLAAKAALRDVGRVLGMAPYELSDWSAAIPAELHITL 455

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A     R R           L   +QKLEGL RH STHAAGIV+  +PL  LVP+  
Sbjct: 456  Q-RAYDQSQRLRNLVADSSRNQLLFATAQKLEGLPRHYSTHAAGIVLSQKPLRDLVPLQP 514

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                +L +TQ+    +E  GL+K DFLGL+ L++L  +L  +  Q G  VDL+ I  +D 
Sbjct: 515  GS-EELLMTQYPKDTVEAVGLLKMDFLGLRNLSILANALALVKKQTGKIVDLNQIDLNDP 573

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L  T  T G+FQ ESSG+++ L  +QPD  E + A+ +LYRPGP++NI  +  RKN
Sbjct: 574  ATLKLFATGETNGVFQFESSGIKRVLRQLQPDSFELVAAVNALYRPGPMENIDTFIRRKN 633

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E +      + P+L  T GV++YQEQVMQ+A ++ G++L +AD+LRRAM KK K+ MD
Sbjct: 634  GQEPVTYPADALAPILGPTYGVLVYQEQVMQVASVMGGFTLGQADLLRRAMSKKKKQTMD 693

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              +++F++GA + G    +A  +F  + +FA+YGFN+SHA AY+ +++Q A++K HYP  
Sbjct: 694  AMQKQFVAGAQQRGYELAVAQRVFAYIDRFANYGFNRSHAVAYSKLAFQLAYLKAHYPAA 753

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F A+ M   ++   K K +  +A++  + ++PP +N     F +  + I + L++IKGV 
Sbjct: 754  FYASLMNSVINVGAKTKVYLTEAKRHGVTVLPPDINRSTAYFNLYHSAIIFGLSSIKGVR 813

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                R ++       PF  L  F  R+ SK     +L +LV+AGA D FG++R +L+ +L
Sbjct: 814  RDFLREVLAERHEHGPFKDLHQFLERIASKYRKADLLNALVYAGAFDHFGHNRAELIAAL 873

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
                   +    N       + A        +  L+  +      +   E+ VLG Y SG
Sbjct: 874  PEFISSVELSGDN-----VELIAALAPKIKSQPDLDLMT------KLSQEEAVLGAYLSG 922

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP++ Y+ + R++  +   E  A      + +   V+  +Q +T++G  + +VT S+   
Sbjct: 923  HPVEQYQQLGRQLQAQAVSELTA---NTRVTVLLYVIKIRQIRTKRGEPMAFVTGSDETA 979

Query: 1026 EYEANFFP 1033
            +     FP
Sbjct: 980  DVSVTIFP 987


>gi|191638356|ref|YP_001987522.1| DNA-directed DNA polymerase III, alpha subunit [Lactobacillus casei
            BL23]
 gi|190712658|emb|CAQ66664.1| DNA-directed DNA polymerase III, alpha subunit [Lactobacillus casei
            BL23]
 gi|327382384|gb|AEA53860.1| DNA polymerase III [Lactobacillus casei LC2W]
 gi|327385585|gb|AEA57059.1| DNA polymerase III [Lactobacillus casei BD-II]
          Length = 1098

 Score =  868 bits (2242), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/1028 (31%), Positives = 526/1028 (51%), Gaps = 59/1028 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L++++    +    AIA+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q+ ID                    ++++    +GY +L+++ +++ L        
Sbjct: 62   LLGMQIAIDD-----------------AKLLVIAKNNQGYHQLLKISTQIMLATS----- 99

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               +++   +   GL+ +T   S P   A   N    A   L        + +YV L   
Sbjct: 100  --PVAFADLLPLTGLVAITLPDS-PFSAAVVANDHNRAVAFLQELDNKQPEAVYVGL--- 153

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
               + + ++ +   A + +L L+A  N L+    D     V+ A+   + ++ +D     
Sbjct: 154  --DEAHLDTPLPTFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRDPVLTD 211

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +LK  ++  + F  + L  A++N  +IA +    +    P LP +   +    Q  
Sbjct: 212  AGPWWLKPPADASAPFVAAGLQAAVDNAAQIADQTDVTITFKQPQLPHYQTPD----QLA 267

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ L   A  GL  R     I        Y+QRL +EL+VI +M F+ YFL+V D + +
Sbjct: 268  SKDYLTKLAQEGLANRFHDQPI-----PTTYQQRLQYELDVIIKMGFADYFLVVWDVMNY 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K NI  G GRGS AGS+ +YAL IT++DP+ + LLFERFLNP R  MPD D+D   +R
Sbjct: 323  AHKVNIMTGAGRGSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLDIPDNR 382

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E+I+YV +KYG   +AQIITFG+  AK A+RDV R   M   + +   + IPN     
Sbjct: 383  RGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPNLLHMD 442

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A       +      P    L + +  LEGL RH STHAAGIV+ + PL+  V + 
Sbjct: 443  LKT-AYDQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                  L  TQ     +E  GL+K DFLGLK L +L  +  F+ +      D   IP +D
Sbjct: 502  -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPKQIPLND 560

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G++  L  ++P   ED++A+ +LYRPGP++NI  +  RK
Sbjct: 561  QPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENIDTFIARK 620

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E I    P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    +
Sbjct: 621  NGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSKKKSSVL 680

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+++++  A++K H P 
Sbjct: 681  AAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYLKVHDPA 740

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F AA M   M+N+ K++ + Q+A+   + ++ P +NT    FK+ D +I + L ++KG+
Sbjct: 741  AFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGLLSVKGM 800

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                +  I  A  + PF    D   R++ K L     + L+ AGA D F  +R Q + +L
Sbjct: 801  RRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRAQTIANL 860

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D +    +    +       +F       + K  +       +  R E E  VLG Y SG
Sbjct: 861  DELINSVKLAGND-----VGLF----SVLAPKPIV--VPEMPAGERLEEEANVLGVYLSG 909

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+D Y P+  +  +    +      G  + +  +V   ++ +T+ G  + +V   +   
Sbjct: 910  HPVDKYAPLKTQYTLVNVVDLAE---GRTVDILLLVRHIKRIRTKTGKPMAFVDGQDATG 966

Query: 1026 EYEANFFP 1033
                  FP
Sbjct: 967  TVSLTVFP 974


>gi|116494849|ref|YP_806583.1| DNA polymerase III, alpha subunit [Lactobacillus casei ATCC 334]
 gi|116104999|gb|ABJ70141.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus casei
            ATCC 334]
          Length = 1098

 Score =  868 bits (2242), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/1028 (31%), Positives = 525/1028 (51%), Gaps = 59/1028 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L++++    +    AIA+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q+ ID                    ++++    +GY +L+++ +++ L        
Sbjct: 62   LLGMQIAIDD-----------------AKLLVIAKNNQGYHQLLKISTQIMLATS----- 99

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               +++   +   GL+ +T   S P   A   N    A   L        + +YV L   
Sbjct: 100  --PVAFADLLPLTGLVAITLPDS-PFSAAVVANEHDRAVAFLQELDNKQPEAVYVGL--- 153

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
               + + ++ +   A + +L L+A  N L+    D     V+ A+   + ++ +D     
Sbjct: 154  --DEAHLDTPLPAFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRDPVLTD 211

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +LK  ++  + F  + L  A++N  +IA +    +    P LP +   +    Q  
Sbjct: 212  AGPWWLKPPADASAPFVAAGLQAAVDNAAQIADQTDVTITFKQPQLPHYQTPD----QLA 267

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ L   A  GL  R     I        Y+QRL +EL+VI +M F+ YFL+V D + +
Sbjct: 268  SKDYLTKLAQEGLANRFHDQPI-----PTTYQQRLQYELDVIIKMGFADYFLVVWDVMNY 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K NI  G GRGS  GS+ +YAL IT++DP+ + LLFERFLNP R  MPD D+D   +R
Sbjct: 323  AHKVNIMTGAGRGSATGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLDIPDNR 382

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E+I+YV +KYG   +AQIITFG+  AK A+RDV R   M   + +   + IPN     
Sbjct: 383  RGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPNLLHMD 442

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A       +      P    L + +  LEGL RH STHAAGIV+ + PL+  V + 
Sbjct: 443  LKT-AYDQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                  L  TQ     +E  GL+K DFLGLK L +L  +  F+ +      D   IP +D
Sbjct: 502  -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPKQIPLND 560

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G++  L  ++P   ED++A+ +LYRPGP++NI  +  RK
Sbjct: 561  QPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENIDTFIARK 620

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E I    P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    +
Sbjct: 621  NGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSKKKSSVL 680

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+++++  A++K H P 
Sbjct: 681  AAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYLKVHDPA 740

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F AA M   M+N+ K++ + Q+A+   + ++ P +NT    FK+ D +I + L ++KG+
Sbjct: 741  AFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGLLSVKGM 800

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                +  I  A  + PF    D   R++ K L     + L+ AGA D F  +R Q + +L
Sbjct: 801  RRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRAQTIANL 860

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D +    +    +       +F       + K  +       +  R E E  VLG Y SG
Sbjct: 861  DELINSVKLAGND-----VGLF----SVLAPKPIV--VPEMPAGERLEEEANVLGVYLSG 909

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+D Y P+  +  +    +      G  + +  +V   ++ +T+ G  + +V   +   
Sbjct: 910  HPVDKYAPLKTQYTLVNVVDLAE---GRTVDILLLVRHIKRIRTKTGKPMAFVDGQDATG 966

Query: 1026 EYEANFFP 1033
                  FP
Sbjct: 967  TVSLTVFP 974


>gi|325272956|ref|ZP_08139274.1| error-prone DNA polymerase [Pseudomonas sp. TJI-51]
 gi|324101909|gb|EGB99437.1| error-prone DNA polymerase [Pseudomonas sp. TJI-51]
          Length = 1026

 Score =  868 bits (2242), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/1041 (28%), Positives = 467/1041 (44%), Gaps = 83/1041 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P +  L   S++S   GA S + +  +       A+AITD   L   +   Q A  
Sbjct: 1    MNSAP-YAELHCLSNFSFQRGASSADELFRRAKEQGYQALAITDECTLAGIVRAWQAAKV 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              +  ++G ++ +                   P +VLLV+   GYQ L  L++R     +
Sbjct: 60   HQLPLVVGSEVQLHDG----------------PKLVLLVADLAGYQNLCALITRARRRAE 103

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K   ++    LQ+     L +   G  G                     + LF +RL++
Sbjct: 104  -KGDYQLFRDDLQQHHHGLLALWVAGDRGDTATG-------------QWLRGLFAERLWL 149

Query: 185  NLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +  HRG D  R  Q  Q LA    +  VA  +            D + A+     V++ 
Sbjct: 150  AVHLHRGSDDARHLQGQQALAAELGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVAEA 209

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R      + +L++  ++  ++   PE L  T+ IA+RC F L       PR +  E   
Sbjct: 210  GRFLFANGERHLRSPVQLAELYP--PEMLAETLAIAQRCQFDLGQLRYQYPRELVPEA-- 265

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                  + LR     GL VR   G  AK       RQ LD EL +I  + +  YFL V D
Sbjct: 266  --HTPASWLRALCEQGLPVRWPHGPSAK------VRQVLDTELALIEELGYESYFLTVHD 317

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             + +A++  I +  GRGS A SV  + L IT++DP++  LLFERFL+ +R   PD D+DF
Sbjct: 318  IVAFARRQRI-LCQGRGSAANSVVCFVLGITELDPMQHRLLFERFLSRERNEPPDIDVDF 376

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              DRR+EVI+YV  +YG  R A      +  A  A+RDV R L +P  QVD L K     
Sbjct: 377  EHDRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARVLGLPMDQVDALAKCCGRW 436

Query: 483  PAHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                     I D+ R  EA      P + R+L ++ +L G  RH S H  G VI  +PL 
Sbjct: 437  SDR------IPDEQRLAEAGFEAGSPLLRRVLILAGELIGFPRHLSQHPGGFVISQQPLD 490

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599
            QLVP+     ++  V Q++   ++  GL+K D L L  L+ L++  D L   RG ++ L+
Sbjct: 491  QLVPVENAAMAERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLLQRHRGRELTLA 550

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DN 657
             IP +D  TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D 
Sbjct: 551  TIPSEDPATYAMISRAETMGVFQIESRAQMAMLPRLRPNTFYDLVIEVAIVRPGPIQGDM 610

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +  Y  R+  +E +    P +  + + T GV ++QEQVM++A + + YS  EAD LRR+M
Sbjct: 611  VHPYLRRRLKQEPVTYPSPKLKEVFERTLGVPLFQEQVMELAMVAADYSPGEADQLRRSM 670

Query: 718  GK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
               K    ++  ++R + G  +NG     A  IFE +  F  YGF +SHAA++A++ Y +
Sbjct: 671  AAWKRHGGLEPHRQRLLQGMLRNGYELAFAERIFEQIKGFGSYGFPESHAASFALLCYAS 730

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--- 833
            +W+K H P  F  A +           +  Q+AR+  I++ P  V     D  +  +   
Sbjct: 731  SWLKCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSEWDCTLEPDAQG 790

Query: 834  --RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               +   L  ++G+    AR + +A A +P+  +ED C R       R  L     AGAL
Sbjct: 791  TLALRMGLRLVRGLAEADARRLEQARAQQPWRDVEDLCLRAGLATRARACL---ADAGAL 847

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
                  R Q    +                    +FA  +      + L   +V   +  
Sbjct: 848  RALASDRHQARWQV------------AAVQAQLPLFADVQAVPEVAVQLPAPTV---AQD 892

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               + + LG     HPL + +  LR +G +   E      G+NI +  +VV +Q+ +T  
Sbjct: 893  LVADYQALGTTLGPHPLTLLRTRLRALGCRSSAELQGLEHGDNIAVTGLVVGRQRPQTAS 952

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G  + +VT  +         +
Sbjct: 953  G--VTFVTLEDEHGMVNVVVW 971


>gi|256370678|ref|YP_003108503.1| putative bifunctional DNA polymerase III subunit alpha/DNA polymerase
            III subunit epsilon [Candidatus Sulcia muelleri SMDSEM]
 gi|256009470|gb|ACU52830.1| putative bifunctional DNA polymerase III, alpha subunit (DnaE)/DNA
            polymerase III, epsilon subunit (DnaQ) [Candidatus Sulcia
            muelleri SMDSEM]
          Length = 1406

 Score =  868 bits (2242), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/1078 (30%), Positives = 559/1078 (51%), Gaps = 69/1078 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC- 63
            L K   F H+  H+ +S+L   + +N+++ K    +  A+ ITD  N+        K   
Sbjct: 222  LFKKKYFSHIHNHTYFSILSSTIDINSLIKKTIEYEMDAVGITDYGNMMGVFNLINKIKT 281

Query: 64   -----AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
                    I+PIIGC+L I   DN  +    K     +   VL+     GY  L +L S+
Sbjct: 282  INESEKKKIKPIIGCELFIS--DNYLIKKFTKKNPDKIYHQVLVAKNKNGYDNLSKLCSK 339

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             ++        RI  + L E   E LI ++G  +  I         + AEK    +  LF
Sbjct: 340  GFIDGYYSGIPRIGKN-LVEKYKENLIAISGDLNSEIPLTLLNKGEKEAEKVFKWWHNLF 398

Query: 179  GDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  Y+ + RH   +    ++ +++ A  +++  +A NN+ +L ++D  AHD+L+ V + 
Sbjct: 399  KDDFYIEILRHGLEEEDHVNKILIKFAKKYKVKFIAQNNNFYLEKKDANAHDILLCVKNC 458

Query: 238  TVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
               S                + Y K + +M ++FSD+PEA +N  E+  +       +  
Sbjct: 459  QKQSIPIGKGKGFRFGFPNKEFYFKKKLQMYNLFSDIPEAFDNLKELIEKVEVYEISNPI 518

Query: 291  ILPRFIEKE--------CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
            +LP+F   +         +DI  E E  L+     G + +         +  +  +++++
Sbjct: 519  LLPKFEIPKKWRKKDCKSNDIHYENE-YLKYLTYKGAKKKF-------DHLNEQIKKKIE 570

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            FEL  I ++ + GYFLIV D I  AKK  + VGPGRGS AGSV AY + IT IDP++++L
Sbjct: 571  FELETIKKIGYPGYFLIVQDLILQAKKIGVEVGPGRGSVAGSVVAYCIGITKIDPIKYNL 630

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNPDR+S+PD DIDF    R+++I++V NKYG + VAQIIT+G + AK+++RD  
Sbjct: 631  LFERFLNPDRVSLPDIDIDFDDKGREKIIQWVVNKYGKDNVAQIITYGKMGAKSSIRDTA 690

Query: 463  RALQMPYSQVDRLCKLIPNDPA----HPVSLQAIADDSRFREAR----------LADPSV 508
            R L +   + D++ K++P + +        ++ +    +F E +            +   
Sbjct: 691  RVLNLSLEETDKMAKMVPTNFSLKEIITKDIKDLKKILKFEELKNVITLKKIFKEKNTLQ 750

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
             + L+ +  +EG  R+   HA GI+I    + + +P+ +   S+L +TQF+ + +EK GL
Sbjct: 751  AKTLKQAMGIEGSVRNTGIHACGIIITPSDIKKYIPVAKTKDSNLLLTQFDNEVVEKMGL 810

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            +K D LGLKTLT+++++L  +  R +K  L  IP DD +TY L     T+ +FQ ES GM
Sbjct: 811  LKMDLLGLKTLTIMKETLFLIKNRNIK--LENIPLDDEKTYELFKNGETVAVFQYESHGM 868

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            ++ L+ ++PD  +D+IA+ +LYRPGP+  I  +  RK+G+EKI    P +   LKET G+
Sbjct: 869  QKYLKQLKPDKFDDLIAMNALYRPGPMQYIPNFIARKHGQEKISYDLPELKEFLKETYGI 928

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
             +YQEQVM I+Q +SG+S  +AD+LR+A+GKK K  +   K++FI G  KNG S  I   
Sbjct: 929  TVYQEQVMLISQKISGFSKGDADLLRKAIGKKEKNLLSNMKKQFIDGGKKNGFSSQILEK 988

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            I++    FA Y FNKSH+  Y+ I+++TA++KTHYP E++A+ ++  M N++ I  F ++
Sbjct: 989  IWKDWKSFASYAFNKSHSTCYSYIAFKTAYLKTHYPAEYMASVLSNNMKNIKDISFFIEE 1048

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
             ++  + ++ P +N     F V       + + AIKG+G  + + I++    K ++S+  
Sbjct: 1049 CKRIGVIVLGPDINESDYKFTVNKLGFIRFGIGAIKGIGEYSVKSILKERKKK-YNSILG 1107

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL------QSLDNIQKYAQWVEKNRTN 921
               +VD + +N++VLE+LV +GA D F   R Q          ++ I K+    +K + N
Sbjct: 1108 LIKKVDLRLVNKKVLENLVVSGAFDNFKIQRSQYFYEENGSNMIEKIIKFGVKYKKIKEN 1167

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
               ++F + K     K   +     N   + + E+ V+G Y + HPL+ YK  ++ +   
Sbjct: 1168 IKNSLFKNIKDIEILKPNFKSCKNWNLFEKLKKEKEVIGMYLTYHPLNEYKYEIKHLTNA 1227

Query: 982  GYEES---VATIRGNNIRLAAMVVSKQQKKT----RKGSRIGWVTFSEPAKEYEANFF 1032
              E+         G  I++  ++      K+    +           +   + E   F
Sbjct: 1228 TIEDLNFNKEKFIGKQIKICGIIS-----KSLNLLKNNKNYIIFILEDYKSKKEFKLF 1280


>gi|148543981|ref|YP_001271351.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus
            reuteri DSM 20016]
 gi|184153376|ref|YP_001841717.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri
            JCM 1112]
 gi|227364894|ref|ZP_03848939.1| DnaE family DNA polymerase III catalytic subunit [Lactobacillus
            reuteri MM2-3]
 gi|325682481|ref|ZP_08161998.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri
            MM4-1A]
 gi|148531015|gb|ABQ83014.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus
            reuteri DSM 20016]
 gi|183224720|dbj|BAG25237.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri
            JCM 1112]
 gi|227070041|gb|EEI08419.1| DnaE family DNA polymerase III catalytic subunit [Lactobacillus
            reuteri MM2-3]
 gi|324978320|gb|EGC15270.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri
            MM4-1A]
          Length = 1115

 Score =  868 bits (2242), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1031 (33%), Positives = 544/1031 (52%), Gaps = 53/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F  L V SSYSLL+    +++++         A+A+TD N L+ A+EF   A  AGI+P
Sbjct: 2    DFTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +L + + +             T   +V L     GYQ L++L +    L Q ++  
Sbjct: 62   ILGLRLVVALNET----------DGTKLDLVFLAKNQRGYQHLMDLST----LQQTRKDK 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            +I L+  Q     G + +       +       +S      L     L  D   + L  +
Sbjct: 108  KISLTIAQISPLLGELFIIIPPQSTVFSVLAQPTS-----ILTELANLGDDDSVL-LGVN 161

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRV 248
               D  +   + QL+    LPLV T+   +L+  D  A  VL A+     +         
Sbjct: 162  SRLDDVQIDTLQQLSKQLSLPLVGTSPVDYLNANDLFASRVLQAIDAGVELKDPTIEAGR 221

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               HYL ++ ++V  +    L  A + TVE+A  C+  LQ  AP+LP F  +        
Sbjct: 222  RGQHYLHSKEQIVQDYNAKGLSAAAQKTVEVAALCNVELQFRAPVLPHFKNQAGIP---- 277

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  LR+  + GL+ R     +A G   Q Y++RL  EL VI  M F  YFLIV D + +
Sbjct: 278  SQQYLRSLCIQGLKKRR----VAPGKTIQQYQERLAMELKVIHEMGFDDYFLIVWDVMNF 333

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I   PGRGS AGS+ AYAL IT++DPL++ LLFERFLNP+R  MPD D+D   +R
Sbjct: 334  AHQQKITTDPGRGSAAGSLVAYALAITEVDPLQYDLLFERFLNPERAQMPDIDLDIPDNR 393

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEV++YV  KYGH+RVAQIITFG+L AK  +RDV R   +P   + RL   +P+     
Sbjct: 394  RDEVLQYVHQKYGHQRVAQIITFGTLAAKQVVRDVSRVFNLPRYDMQRLIDALPHGLHVT 453

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A+ +  + +     +P    L++++Q+LEGL RH S HAAGIV+ ++PL ++VP+ 
Sbjct: 454  LK-DALKESQQLKNLLDDNPKFRLLIQVAQQLEGLPRHYSIHAAGIVLSEQPLHEIVPLQ 512

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D    L +TQF    +E  GL+K DFLGLK L+++  +L  + Q     DL  I F+D 
Sbjct: 513  -DGSDGLLMTQFAKDTVEALGLLKMDFLGLKNLSIMDNTLQMIRQEDPTFDLQKINFNDQ 571

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T GIFQ ESSG+R  L  + P   EDI+A+ +LYRPGP++NI  +  RK 
Sbjct: 572  LTLQLFQRGKTEGIFQFESSGIRNVLVNLHPTNFEDIVAVNALYRPGPMENIPHFTARKA 631

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GKEKI    P ++ +L  T G+++YQEQVMQ+A +++G++L EAD+LRRAM KK K  M+
Sbjct: 632  GKEKITYPAPSLEKILGPTYGILVYQEQVMQLASVMAGFTLGEADLLRRAMSKKKKATME 691

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              + +FI+GA+++G S  +A  +FE + +FA+YGFN+SHA AY++++++ A++K HYP  
Sbjct: 692  DMRTKFIAGATEHGYSAQVAHQVFEYIDRFANYGFNRSHAVAYSMMAFEMAYLKVHYPAA 751

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  A M  E  N+EK+K+   DA+QF ++I  P +N     F + D  +Y+  +AIKGV 
Sbjct: 752  FFTALMNAET-NIEKLKRHVGDAKQFGVKISSPRINISESSFLLHDETVYFGFSAIKGVR 810

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+E    +  F  L +F +R+  +   + ++E L+++GA D  GY+R +++ +L
Sbjct: 811  RDFIAAILEERQENGKFTDLRNFIARIPERWQKQELIEPLIYSGAFDKMGYNRAEMIDAL 870

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYF 963
              +    +            +FA         +   +++ +      R   E   LG Y 
Sbjct: 871  PKLISGIE------------LFAGFANFDDPALQTAIDQRNEFPLLTRLTKENEYLGVYL 918

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSE 1022
            SGHP+  Y  + +++      +       +   +  +    +   T++  R + +V  ++
Sbjct: 919  SGHPVTQYYQLGQQLHATKIADLYP---NSEATIIVLTNHVKTIYTKREHREMAFVNGTD 975

Query: 1023 PAKEYEANFFP 1033
                 +   FP
Sbjct: 976  ETGAIDITVFP 986


>gi|300767496|ref|ZP_07077408.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            plantarum subsp. plantarum ATCC 14917]
 gi|300495315|gb|EFK30471.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            plantarum subsp. plantarum ATCC 14917]
          Length = 1116

 Score =  867 bits (2241), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1029 (32%), Positives = 542/1029 (52%), Gaps = 45/1029 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V LQV S++SLL    +++ ++         A+A+TD + ++  ++F      A I PI
Sbjct: 4    YVPLQVLSTFSLLHSTSTVSELVQTAKQQGYSALALTDVDIMYGIVDFYNACRQAEITPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +           + +   G+       S+V+L     GYQ L+ L +          S+ 
Sbjct: 64   L----------GITLNLLGRELTAQTFSLVVLAKDQAGYQNLMRLSTMKQTATDAGLSLT 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRH 189
              L +L       L++LT      +      N+++ A   + T +++     LY+ +   
Sbjct: 114  AVLPYL-----NHLMVLTPAKDSELAALLLQNTAERAADWITTLRQVVDSASLYLGISLD 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            +       + +   A  H+LP+VA +   ++  +DY A  VL A+     + Q +  + +
Sbjct: 169  QAP--ALRTTMTAFAQQHQLPVVALDPVDYVQAKDYFAVSVLRAIDRGQQIEQPESLQGI 226

Query: 249  TPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               HYL+  + + + +  L    A+  T EIA +C   LQ   P LP+F           
Sbjct: 227  EGSHYLRPANTVTADYEQLGLTTAVAATAEIAAQCQVELQFQQPQLPQFPTPAGQPANV- 285

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR    AGL  RLA  AI      Q Y+ RLD EL VI +M F  YFLIV D + +
Sbjct: 286  ---YLRQLCTAGLTERLA--AITPSVDQQAYQDRLDHELTVIDQMGFDDYFLIVWDVMNF 340

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I  GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLN  R +MPD D+D   +R
Sbjct: 341  AHEAQITTGPGRGSAAGSLVAYALNITDVDPLKYDLLFERFLNAKRANMPDIDLDIPDNR 400

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R++V+ YV +KYGH+RVAQIITFG+L AK ALRDVGR   +   ++      IPN     
Sbjct: 401  REQVLNYVHDKYGHDRVAQIITFGTLAAKQALRDVGRVFGLSTYEMSDWSAAIPNQLHIT 460

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  QA     R +           L E +++LEGL RH STHAAG+V+  +PL Q+VP+ 
Sbjct: 461  LD-QAYQGSQRLQNLVADSSKNKLLFETARRLEGLPRHYSTHAAGVVLSQKPLIQIVPLQ 519

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                  + +TQ+    +E  GL+K DFLGL+ L+L+  +L ++  Q G  + ++ I  +D
Sbjct: 520  -AGSETMMMTQYTKDTVEAVGLLKMDFLGLRNLSLMASALHYVQRQTGKPLAITKIDLND 578

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + PD  E + A+ +LYRPGP++NI  +  RK
Sbjct: 579  PATLKLFQAGDTTGVFQFESAGIRNVLRRLHPDNFELVAAVNALYRPGPMENIDHFIARK 638

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G+E +      + P+L  T G+++YQEQVMQ+A ++ G++L EAD+LRRAM KK +  +
Sbjct: 639  QGQEPVSYPAEQLAPILGPTYGILVYQEQVMQVAAVMGGFTLGEADLLRRAMSKKKRAVI 698

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            DK +++FI+GA +NG S+ +A  +++ + +FA+YGFN+SHA AY+ ++++ A++K HY  
Sbjct: 699  DKMRQQFIAGAQQNGYSEAVATQVYQYIEQFANYGFNRSHAIAYSKMAFELAYLKVHYSG 758

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  + M   + N  K+K++  +ARQ  + I+PP +N     F      I + L++IKG+
Sbjct: 759  AFFTSLMNSVLGNGTKLKQYLAEARQHQVAIIPPDINRSGQYFDWNGQAIVFGLSSIKGL 818

Query: 846  GTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
                   ++ E  A+ PF SL+ F  R+D+K L   ++++L++AGA D FG +R +LL S
Sbjct: 819  RRDFIASVLDERQANGPFKSLQQFMQRIDAKWLKADLMDALIYAGAFDHFGLNRAELLTS 878

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  +   A            ++F       S    ++K    +   R   E   LG Y S
Sbjct: 879  VPELMSSA-----ELAGGSMSLF------ESLAPKIKKQPELSLGERLAKEAEYLGVYVS 927

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            GHP++ Y   L +        ++ + +   I +   +   +  +T++G  + + T S+ +
Sbjct: 928  GHPVETY-DWLAQQRHTQLVSTLTSEQPAQILV--YITKVRTIRTKRGQPMAFATGSDLS 984

Query: 1025 KEYEANFFP 1033
             E +   FP
Sbjct: 985  GEIDLTIFP 993


>gi|308180707|ref|YP_003924835.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            plantarum subsp. plantarum ST-III]
 gi|308046198|gb|ADN98741.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            plantarum subsp. plantarum ST-III]
          Length = 1116

 Score =  866 bits (2239), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1029 (32%), Positives = 543/1029 (52%), Gaps = 45/1029 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V LQV S++SLL    +++ ++         A+A+TD + ++  ++F      A I PI
Sbjct: 4    YVPLQVLSTFSLLHSTSTVSELVQTAKQQGYSALALTDVDIMYGIVDFYNACRQAEINPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +           + +   G+       S+V+L     GYQ L++L +          S+ 
Sbjct: 64   L----------GITLNLLGRELTAQTFSLVVLAKDQAGYQNLMQLSTMKQTATDAGLSLT 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
              L +L       L++LT      +      N+++ A   + T ++ +    LY+ +   
Sbjct: 114  AVLPYL-----NHLMVLTPAKDSELAALLLQNTAERAADWITTLRQAVDSASLYLGISLD 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            +       + +   A  H+LP+VA +   ++  +DY A  VL A+     + Q +  + +
Sbjct: 169  QAP--ALRTTMTAFAQQHQLPVVALDPVDYVQAKDYFAVSVLRAIDRGQQIEQPESLQGI 226

Query: 249  TPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               HYL+  + + + +  L    A+  T EIA +C   LQ   P LP+F           
Sbjct: 227  EGSHYLRPANTVTADYEQLGLTTAVAATAEIAAQCQVELQFQQPQLPQFPTPAGQPANV- 285

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR    AGL  RLA  AI      Q Y+ RLD EL VI +M F  YFLIV D + +
Sbjct: 286  ---YLRQLCTAGLTERLA--AITPSVDQQAYQDRLDHELTVIDQMGFDDYFLIVWDVMNF 340

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I  GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLN  R +MPD D+D   +R
Sbjct: 341  AHEAQITTGPGRGSAAGSLVAYALNITDVDPLKYDLLFERFLNAKRANMPDIDLDIPDNR 400

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R++V+ YV +KYGH+RVAQIITFG+L AK ALRDVGR   +   ++      IPN     
Sbjct: 401  REQVLNYVHDKYGHDRVAQIITFGTLAAKQALRDVGRVFGLSTYEMSDWSAAIPNQLHIT 460

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  QA     R +           L E +++LEGL RH STHAAG+V+  +PL Q+VP+ 
Sbjct: 461  LD-QAYQGSQRLQNLVADSSKNKLLFETARRLEGLPRHYSTHAAGVVLSQKPLIQIVPLQ 519

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                  + +TQ+    +E  GL+K DFLGL+ L+L+  +L ++  Q G  + ++ I  +D
Sbjct: 520  -AGSETMMMTQYTKDTVEAVGLLKMDFLGLRNLSLMASALHYVQRQTGKPLAITKIDLND 578

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + PD  E + A+ +LYRPGP++NI  +  RK
Sbjct: 579  PATLKLFQAGDTTGVFQFESAGIRNVLRRLHPDNFELVAAVNALYRPGPMENIDHFIARK 638

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G+E +      + P+L  T G+++YQEQVMQ+A ++ G++L EAD+LRRAM KK +  +
Sbjct: 639  QGQEPVSYPAEQLAPILGPTYGILVYQEQVMQVAAVMGGFTLGEADLLRRAMSKKKRAVI 698

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            DK +++FI+GA +NG S+ +A  +++ + +FA+YGFN+SHA AY+ ++++ A++K HY  
Sbjct: 699  DKMRQQFIAGAQQNGYSEAVATQVYQYIEQFANYGFNRSHAIAYSKMAFELAYLKVHYSG 758

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  + M   + N  K+K++  +ARQ  + I+PP +N     F      I + L++IKG+
Sbjct: 759  AFFTSLMNSVLGNGTKLKQYLAEARQHQVAIIPPDINRSGQYFDWNGQAIVFGLSSIKGL 818

Query: 846  GTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
                   ++ E  A+ PF SL+ F  R+D+K L   ++++L++AGA D FG +R +LL S
Sbjct: 819  RRDFIASVLDERQANGPFKSLQQFMQRIDAKWLKADLMDALIYAGAFDHFGLNRAELLTS 878

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  +   A            ++F       S    ++K    +   R   E   LG Y S
Sbjct: 879  VPELMSSA-----ELAGGSMSLF------ESLAPKIKKQPELSLGERLAKEAEYLGVYVS 927

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            GHP++ Y   L +        ++ + +   I +   +   +  +T++G  + + T S+ +
Sbjct: 928  GHPVETY-DWLAQQRHTQLVSTLTSEQPAQILV--YITKVRTIRTKRGQPMAFATGSDLS 984

Query: 1025 KEYEANFFP 1033
             E +   FP
Sbjct: 985  GEIDLTIFP 993


>gi|323488459|ref|ZP_08093706.1| DNA polymerase III DnaE [Planococcus donghaensis MPA1U2]
 gi|323397966|gb|EGA90765.1| DNA polymerase III DnaE [Planococcus donghaensis MPA1U2]
          Length = 1020

 Score =  866 bits (2237), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1028 (34%), Positives = 577/1028 (56%), Gaps = 51/1028 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S V+  + +S  LL+  + L+ +   +      ++AI +T  L+  L F +    AGI  
Sbjct: 2    SMVYPHISTSADLLKSTVRLDELFPFLKEQGASSVAIVNTK-LYGMLPFWEACRRAGIHG 60

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G    I+ ++                S+VL   + +GY  L+++ S +   D+     
Sbjct: 61   VVGLSTFIEYEE-------------QHYSVVLYAQSNKGYDNLLKISSALATRDKEA--- 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL+    EGLI +    +      +      +    +   K LFG   + +++R 
Sbjct: 105  -IPEQWLKAY-KEGLICVIPNKA-----EWLLTDRSLV---IGYIKSLFGQAAFGSIERP 154

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             G     ES  ++L    E+P++AT+   ++ ++D  A++V  A+     ++  +R   T
Sbjct: 155  GGVVSAYESDFIELCAQLEIPIMATHEIRYMHQQDAFAYEVASAIGQGLKMNDPERQ--T 212

Query: 250  PDH---YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            P+H   Y+ ++ E    F+D  E ++ T  + + C   + ++  +LP +   E    Q +
Sbjct: 213  PEHTNAYVPSQQEFFEWFADRNEWVQQTANMLKSCRVTIPMNQQLLPVYPLSE----QVD 268

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            + + +      GL+ R+ +         ++Y++RL++EL+VIA+M F  YFLIVADF+++
Sbjct: 269  KASYIAQLCKTGLKERVPR-------FPENYQERLNYELSVIAKMGFIDYFLIVADFMKY 321

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK  +I  GPGRGS A S+ AY+L IT++DP+   LLFERFLNP+R+++PD DIDF   R
Sbjct: 322  AKDQDIMTGPGRGSSASSLVAYSLKITNVDPIEHGLLFERFLNPERVTLPDIDIDFADHR 381

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EV+ YV  KYG  R AQIITFG+L AKA  RD  R       +++ + KLI N P   
Sbjct: 382  RHEVVDYVAKKYGAVRTAQIITFGTLSAKAVARDTARVFGFEAEELEAISKLISNRPGTT 441

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A+ + S+F +  +         + + KLEGL RHASTHAAG+++   PL   VP+ 
Sbjct: 442  LR-SALKESSKFNDWIIEREERKSWFKTALKLEGLPRHASTHAAGVILSPTPLVNHVPIE 500

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            +     + +TQ+ M+ +E  GL+K DFLGL+ LT+L++  + +      K++ S IP DD
Sbjct: 501  KG-HEGIYLTQWPMQELEAIGLLKMDFLGLRNLTILEQIRNLVYWGTKQKINYSDIPLDD 559

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T+ LL +  T G+FQLES GMRQAL+ +QP    DI+A+ +LYRPGP++ I +Y  RK
Sbjct: 560  EKTFKLLASGDTTGVFQLESDGMRQALQQIQPTAFGDIVAVNALYRPGPMEFIPLYARRK 619

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+E +  IHP+++P+L ET GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ KK +E +
Sbjct: 620  HGQETVKYIHPILEPILSETYGVIVYQEQIMHIAAKMAGFSLGEADLLRRAVSKKKREIL 679

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++E F+ GA+  G +K+ A  +++L+ +FADYGF KSHA AY++ISYQ ++MK HYPV
Sbjct: 680  DEEREHFVLGATSKGFTKSEAAEVYDLIVRFADYGFPKSHAVAYSMISYQLSYMKAHYPV 739

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  + +T    N EK K+  Q+ ++  I I+PPSV      F V D +I + L A+KGV
Sbjct: 740  YFYTSLLTNSAGNAEKTKQLLQEIKEKKIPILPPSVQKSRHTFSVEDGQIRFGLNAVKGV 799

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
              TT + ++ A  + PF  L +   R+ +   NR+  E L+ AGALD FGY R  +L SL
Sbjct: 800  PGTTIKALLAAREEGPFTGLFNIAERISALHFNRKSFEPLIKAGALDEFGYDRGVILASL 859

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D+  K+A+ V+ N       +F     +F  K    K S    +++ E E+ VLGFY S 
Sbjct: 860  DSAIKHAELVKPNDEPG---LFDDMGASFM-KPKYTKASEMPENLKLEFEKDVLGFYLSK 915

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP++  +   R+      +   +     ++++  ++   ++ +T+KG  + ++T  +   
Sbjct: 916  HPIER-EKEHRQKSYDALKSLKSKRDRESVKVLGVIEEIKRIRTKKGDAMAFLTLMDETG 974

Query: 1026 EYEANFFP 1033
                  FP
Sbjct: 975  PASVTLFP 982


>gi|212638343|ref|YP_002314863.1| DNA polymerase III subunit alpha [Anoxybacillus flavithermus WK1]
 gi|212559823|gb|ACJ32878.1| DNA polymerase III, alpha subunit [Anoxybacillus flavithermus WK1]
          Length = 1077

 Score =  865 bits (2236), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/1034 (34%), Positives = 564/1034 (54%), Gaps = 75/1034 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  + SF+HLQV S YSLL   + +  ++ +    Q PAIA+TD N L+  + F +   A
Sbjct: 1    MGDTLSFIHLQVRSGYSLLSSTVKIEELVTRARELQFPAIALTDENVLYGVMPFYEACQA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG    I  +                  +VLL    +GY++L+ + + +   D 
Sbjct: 61   HGIKPIIGMMATIMDEHGH------------PDQLVLLAKNNDGYRQLVHIATAIQTNDG 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                  I L       T  LI +T G  G +++       + AE  + T+ KLF     Y
Sbjct: 109  ----KGISLLDFSH-HTSELIGMTSGVYGRVEQHLLNGEIEQAEAIVQTYAKLFQRGDFY 163

Query: 184  VNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            +N+QRH   ++     ++ + +   ++PLVATN+  ++ +ED  A + L+A+ H   +  
Sbjct: 164  INVQRHGLQEQEHLLSLLFEHSKRWDIPLVATNDVRYIYKEDTLAFECLLAMKHGKKMVD 223

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             +RPR+ T +++LK+  EM ++FS+  EA+E TV IA+RC    +     +PR+      
Sbjct: 224  PNRPRLATNEYHLKSAHEMAALFSNGYEAVEETVRIAQRCHVTFESKRWFMPRYPVPSG- 282

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               K  +  L+         R            + Y  RL +EL +I +M FS YFLIVA
Sbjct: 283  ---KTADEYLQTWCWEQFTKRFPD-------RPKAYVARLQYELQIIQQMNFSDYFLIVA 332

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF+++A++  I  GPGRGS AGS+ AY L IT +DPL++ LLFERFLNP R+S+PD DID
Sbjct: 333  DFVRFARERGILTGPGRGSAAGSIVAYILGITQVDPLQYGLLFERFLNPARLSLPDIDID 392

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  DRR+EVIRY++ KYG + VAQI+TFG+   ++A+R+VGR   +   ++ +       
Sbjct: 393  FPDDRREEVIRYIEQKYGTDHVAQIVTFGTFGMRSAIREVGRVFDVDEREIQQTLATGSF 452

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            D   P                           ++Q++EGL +H S HAAGIVI  RPL+ 
Sbjct: 453  DRTRPWHY------------------------VAQRIEGLPKHTSVHAAGIVISPRPLTD 488

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSL 600
            ++P+    ++   VTQ+ M  +E+ GL+KFD L LK LT++++ +  + QR         
Sbjct: 489  IIPLQ-SGQTTTYVTQYAMDALERLGLLKFDLLALKNLTMIEQMIQSIEQRTGHRLSFEN 547

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD +TY LL+   T G+FQLES GM++ L  +QP   EDI+A+ +L+RPGP++ I  
Sbjct: 548  MPIDDQKTYALLSRGDTFGVFQLESEGMKRILRELQPTTFEDIVAVNALFRPGPMEQIPT 607

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  RK+G+E I  +H  +  +L+ T GVI+YQEQ+M+IA+ ++ +SL++AD+LRRA+ KK
Sbjct: 608  YIARKHGREPIRYMHDDLQSILQSTYGVIVYQEQIMKIAEQMAKFSLAQADLLRRAISKK 667

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               +M+K+K+ FI G  +NG    +A  ++EL+ +FA YGFN+SHA AY+ I+Y  A++K
Sbjct: 668  DVGQMEKEKKHFIEGCIQNGYDAHLANELYELIVRFAGYGFNRSHAVAYSYIAYMLAYIK 727

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYP++F AA +T      EK+ +   + R   I+++PPS+      F V DN I + L 
Sbjct: 728  AHYPLDFYAAVLTNVSGQKEKMMQCVHELRSKKIRLLPPSIARSEGHFTVDDNGIRFGLL 787

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIK V     + ++     +PF    DF SR+  +   ++V+E+L+F+G  D F   R  
Sbjct: 788  AIKQVNAAFVKQMVRERQKRPFSDFFDFVSRLRMESSQKKVIEALIFSGCFDEFHIERAT 847

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L  S+D   ++A+ +         ++    K   ++ ++L          + + E++ L 
Sbjct: 848  LYASIDVAIEHAELMN-------FSLHVQPKYVHAEPLSLID--------QLKYEKQWLN 892

Query: 961  FYFSGHPLDVYKPILRKMGIKG-YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y S HP++ +       G K  YE +   +    + +   V    +K+T+KG  + +VT
Sbjct: 893  VYVSPHPVESFSHFYSMWGAKRMYEWTKENVNHGKVIV--YVEEVTRKRTKKGEEMAFVT 950

Query: 1020 FSEPAKEYEANFFP 1033
              + + E++A  FP
Sbjct: 951  ICDDSDEWQAVVFP 964


>gi|254556764|ref|YP_003063181.1| DNA-directed DNA polymerase III, alpha chain [Lactobacillus plantarum
            JDM1]
 gi|254045691|gb|ACT62484.1| DNA-directed DNA polymerase III, alpha chain [Lactobacillus plantarum
            JDM1]
          Length = 1116

 Score =  864 bits (2233), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/1029 (32%), Positives = 541/1029 (52%), Gaps = 45/1029 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V LQV S++SLL    +++ ++          +A+TD + ++  ++F      A I PI
Sbjct: 4    YVPLQVLSTFSLLHSTSTVSELVQTAKQQGYSTLALTDVDIMYGIVDFYNACRQAEITPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +           + +   G+       S+V+L     GYQ L+ L +          S+ 
Sbjct: 64   L----------GITLNLLGRELTAQTFSLVVLAKDQAGYQNLMRLSTMKQTATDAGLSLT 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
              L +L       L++LT      +      N+++ A   + T ++ +    LY+ +   
Sbjct: 114  AVLPYL-----NHLMVLTPAKDSELAALLLQNTAERAADWITTLRQAVDSASLYLGISLD 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            +       + +   A  H+LP+VA +   ++  +DY A  VL A+     + Q +  + +
Sbjct: 169  QAP--ALRTTMTAFAQQHQLPVVALDPVDYVQAKDYFAVSVLRAIDRGQQIEQPESLQGI 226

Query: 249  TPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               HYL+  + + + +  L    A+  T EIA +C   LQ   P LP+F           
Sbjct: 227  EGSHYLRPANTVTADYEQLGLTTAVAATAEIAAQCQVELQFQQPQLPQFPTPAGQPANV- 285

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR    AGL  RLA  AI      Q Y+ RLD EL VI +M F  YFLIV D + +
Sbjct: 286  ---YLRQLCTAGLTERLA--AITPSVDQQAYQDRLDHELTVIDQMGFDDYFLIVWDVMNF 340

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I  GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLN  R +MPD D+D   +R
Sbjct: 341  AHEAQITTGPGRGSAAGSLVAYALNITDVDPLKYDLLFERFLNAKRANMPDIDLDIPDNR 400

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R++V+ YV +KYGH+RVAQIITFG+L AK ALRDVGR   +   ++      IPN     
Sbjct: 401  REQVLNYVHDKYGHDRVAQIITFGTLAAKQALRDVGRVFGLSTYEMSDWSAAIPNQLHIT 460

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  QA     R +           L E +++LEGL RH STHAAG+V+  +PL Q+VP+ 
Sbjct: 461  LD-QAYQGSQRLQNLVADSSKNKLLFETARRLEGLPRHYSTHAAGVVLSQKPLIQIVPLQ 519

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                  + +TQ+    +E  GL+K DFLGL+ L+L+  +L ++  Q G  + ++ I  +D
Sbjct: 520  -AGSETMMMTQYTKDTVEAVGLLKMDFLGLRNLSLMASALHYVQRQTGKPLAITKIDLND 578

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + PD  E + A+ +LYRPGP++NI  +  RK
Sbjct: 579  PATLKLFQAGDTTGVFQFESAGIRNVLRRLHPDNFELVAAVNALYRPGPMENIDHFIARK 638

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G+E +      + P+L  T G+++YQEQVMQ+A ++ G++L EAD+LRRAM KK +  +
Sbjct: 639  QGQEPVSYPAEQLAPILGPTYGILVYQEQVMQVAAVMGGFTLGEADLLRRAMSKKKRAVI 698

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            DK +++FI+GA +NG S+ +A  +++ + +FA+YGFN+SHA AY+ ++++ A++K HY  
Sbjct: 699  DKMRQQFIAGAQQNGYSEAVATQVYQYIEQFANYGFNRSHAIAYSKMAFELAYLKVHYSG 758

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  + M   + N  K+K++  +ARQ  + I+PP +N     F      I + L++IKG+
Sbjct: 759  AFFTSLMNSVLGNGTKLKQYLAEARQHQVAIIPPDINRSGQYFDWNGQAIVFGLSSIKGL 818

Query: 846  GTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
                   ++ E  A+ PF SL+ F  R+D+K L   ++++L++AGA D FG +R +LL S
Sbjct: 819  RRDFIASVLDERQANGPFKSLQQFMQRIDAKWLKADLMDALIYAGAFDHFGLNRAELLTS 878

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  +   A            ++F       S    ++K    +   R   E   LG Y S
Sbjct: 879  VPELMSSA-----ELAGGSMSLF------ESLAPKIKKQPELSLGERLAKEAEYLGVYVS 927

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            GHP++ Y   L +        ++ + +   I +   +   +  +T++G  + + T S+ +
Sbjct: 928  GHPVETY-DWLAQQRHTQLVSTLTSEQPAQILV--YITKVRTIRTKRGQPMAFATGSDLS 984

Query: 1025 KEYEANFFP 1033
             E +   FP
Sbjct: 985  GEIDLTIFP 993


>gi|170785363|gb|ACB37722.1| DNA polymerase III alpha subunit [Micromonospora chalcea]
          Length = 1031

 Score =  864 bits (2233), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/922 (34%), Positives = 486/922 (52%), Gaps = 46/922 (4%)

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQL 203
              TG  SG +           A K    ++ +F  D  ++ L  H    +R     + ++
Sbjct: 2    ATTGCPSGAVQTRLRLGQFDEAIKVASAYQDIFGKDNYFLELMDHGLDIERRVREGLTEI 61

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL-KNRSEMVS 262
                 +P V TN+S +  E   EAHDVL+ V   + ++  +R R     Y  K+  +M +
Sbjct: 62   GKKLGIPPVVTNDSHYTHEAQAEAHDVLLCVQTGSNIADPNRFRFEGGGYFIKSADQMRA 121

Query: 263  IFSD--LPEALENTVEIARRCSF--ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
            + S     +   NT+ +A +     + + H  ++PRF   E +     EE+  R +   G
Sbjct: 122  VDSSELWLQGCRNTLLVAEKVDPAGMFEFH-NLMPRFPIPEGE----TEESWFRKETFKG 176

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            L  R   G        + +  + ++EL VI +M F  YFL+VADFIQWAK   I VGPGR
Sbjct: 177  LARRFPGGI------PEGHVVQAEYELGVIIQMGFPSYFLVVADFIQWAKNQGIAVGPGR 230

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GS AGS+ AYAL ITD+DP+   L+FERFLNP+R+SMPD DIDF + RR EVI+YV +K+
Sbjct: 231  GSAAGSLVAYALGITDLDPIPHGLIFERFLNPERVSMPDVDIDFDERRRGEVIKYVTDKW 290

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS- 496
            G ++VAQI TFG+++AKAA++D  R L  PY+  DR+ K +P       + L  I D   
Sbjct: 291  GEDKVAQIATFGTIKAKAAIKDSARVLGYPYAVGDRITKAMPPAVMGKDIPLSGIFDPKH 350

Query: 497  -------RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                     R    +DP V ++++ ++ +EGL R    HAAG+++   P+ + +P+ R  
Sbjct: 351  PRYAEAGEIRGLYESDPDVKKVIDTAKGIEGLIRQTGVHAAGVIMSAEPIIEHIPLMRRD 410

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHET 608
               + +TQF+    E  GL+K DFLGL+ LT++  ++  +    G  +DL  +  DD   
Sbjct: 411  SDGVIITQFDYPTCESLGLLKMDFLGLRNLTIIDDAVKNIQLNHGKDLDLLGLDLDDKAA 470

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKN 666
            Y LL    TLG+FQL+   MR  L  M+PD  EDI A+++LYRPGP+  D+   Y  RKN
Sbjct: 471  YELLARGDTLGVFQLDGGPMRSLLRLMKPDNFEDISAVLALYRPGPMGVDSHTNYALRKN 530

Query: 667  GKEKIVSIHPLIDP----MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            G ++I  IHP ++     +L  T G+I+YQEQV + AQ+L+GY+L +AD+LRRAMGKK K
Sbjct: 531  GLQEITPIHPELEEPLREILAPTHGLIVYQEQVQRAAQILAGYTLGQADLLRRAMGKKKK 590

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E +DK+   F  G  + G S      ++++L  FA Y FNK+H+AAY ++SY TA++K H
Sbjct: 591  EILDKEFVPFRDGCRERGYSDEAIQAVWDVLVPFAGYAFNKAHSAAYGLVSYWTAYLKAH 650

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP E++A  +T   D+ +K+  +  + R+  IQ++PP VNT    F      I + LAAI
Sbjct: 651  YPAEYMAGLLTSVGDDKDKMALYLSECRRMGIQVLPPDVNTSAGPFTPVGKDIRFGLAAI 710

Query: 843  KGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            + VG      IM    +   +    DF ++VD+   N++ +ESL+ AGA D  G+SR  L
Sbjct: 711  RNVGANVVASIMRCRQEKGEYADFYDFLAKVDAVVCNKKTIESLIKAGAFDVMGHSRKGL 770

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-------KITLEKFSVENSSVRFEN 954
            L    +       V++       ++F    G             T+ + +  +   +   
Sbjct: 771  LAVHADAIDAYADVKRKEAVGQYDLFGAGFGDTETVGGNTTVMPTIGE-AEWDKRDKLAF 829

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---TIRGNNIRLAAMVVSKQQKKTRK 1011
            E+ +LG Y S HPL   + +L                   G  + LA ++   Q++ T++
Sbjct: 830  EREMLGLYVSDHPLFGLEHVLGAAADCTIAALSEEGTVPDGAVVTLAGILSGVQRRVTKQ 889

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G      T  + A   EA FFP
Sbjct: 890  GRAWASATLEDLAGGVEALFFP 911


>gi|28378550|ref|NP_785442.1| DNA-directed DNA polymerase III, alpha chain [Lactobacillus plantarum
            WCFS1]
 gi|28271386|emb|CAD64291.1| DNA-directed DNA polymerase III, alpha chain [Lactobacillus plantarum
            WCFS1]
          Length = 1116

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/1029 (32%), Positives = 540/1029 (52%), Gaps = 45/1029 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V LQV S++SLL    +++ ++          +A+TD + ++  ++F      A I PI
Sbjct: 4    YVPLQVLSTFSLLHSTSTVSELVQTAKQQGYSTLALTDVDIMYGIVDFYNACRQAEITPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +           + +   G+       S+V+L     GYQ L+ L +          S+ 
Sbjct: 64   L----------GITLNLLGRELTAQTFSLVVLAKDQAGYQNLMRLSTMKQTATDAGLSLT 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
              L +L       L++LT      +      N+++ A   + T ++ +    LY+ +   
Sbjct: 114  AVLPYL-----NHLMVLTPAKDSELAALLLQNTAERAADWITTLRQAVDSASLYLGISLD 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            +       + +   A  H+LP+VA +   ++  +DY A  VL A+     + Q +  + +
Sbjct: 169  QAP--ALRTTMTAFAQQHQLPVVALDPVDYVQAKDYFAVSVLRAIDRGQQIEQPESLQGI 226

Query: 249  TPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               H L+  + + + +  L    A+  T EIA +C   LQ   P LP+F           
Sbjct: 227  EGSHCLRPANTVTADYEQLGLTTAVAATAEIAAQCQVELQFQQPQLPQFPTPAGQPANV- 285

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR    AGL  RLA  AI      Q Y+ RLD EL VI +M F  YFLIV D + +
Sbjct: 286  ---YLRQLCTAGLTERLA--AITPSVDQQAYQDRLDHELTVIDQMGFDDYFLIVWDVMNF 340

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I  GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLN  R +MPD D+D   +R
Sbjct: 341  AHEAQITTGPGRGSAAGSLVAYALNITDVDPLKYDLLFERFLNAKRANMPDIDLDIPDNR 400

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R++V+ YV +KYGH+RVAQIITFG+L AK ALRDVGR   +   ++      IPN     
Sbjct: 401  REQVLNYVHDKYGHDRVAQIITFGTLAAKQALRDVGRVFGLSTYEMSDWSAAIPNQLHIT 460

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  QA     R +           L E +++LEGL RH STHAAG+V+  +PL Q+VP+ 
Sbjct: 461  LD-QAYQGSQRLQNLVADSSKNKLLFETARRLEGLPRHYSTHAAGVVLSQKPLIQIVPLQ 519

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                  + +TQ+    +E  GL+K DFLGL+ L+L+  +L ++  Q G  + ++ I  +D
Sbjct: 520  -AGSETMMMTQYTKDTVEAVGLLKMDFLGLRNLSLMASALHYVQRQTGKPLAITKIDLND 578

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + PD  E + A+ +LYRPGP++NI  +  RK
Sbjct: 579  PATLKLFQAGDTTGVFQFESAGIRNVLRRLHPDNFELVAAVNALYRPGPMENIDHFIARK 638

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G+E +      + P+L  T G+++YQEQVMQ+A ++ G++L EAD+LRRAM KK +  +
Sbjct: 639  KGQEPVSYPAEQLAPILGPTYGILVYQEQVMQVAAVMGGFTLGEADLLRRAMSKKKRAVI 698

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            DK +++FI+GA +NG S+ +A  +++ + +FA+YGFN+SHA AY+ ++++ A++K HY  
Sbjct: 699  DKMRQQFIAGAQQNGYSEAVATQVYQYIEQFANYGFNRSHAIAYSKMAFELAYLKVHYSG 758

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  + M   + N  K+K++  +ARQ  + I+PP +N     F      I + L++IKG+
Sbjct: 759  AFFTSLMNSVLGNGTKLKQYLAEARQHQVAIIPPDINRSGQYFDWNGQAIVFGLSSIKGL 818

Query: 846  GTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
                   ++ E  A+ PF SL+ F  R+D+K L   ++++L++AGA D FG +R +LL S
Sbjct: 819  RRDFIASVLDERQANGPFKSLQQFMQRIDAKWLKADLMDALIYAGAFDHFGLNRAELLTS 878

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  +   A            ++F       S    ++K    +   R   E   LG Y S
Sbjct: 879  VPELMSSA-----ELAGGSMSLF------ESLAPKIKKQPEISLGERLAKEAEYLGVYVS 927

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            GHP++ Y   L +        ++ + +   I +   +   +  +T++G  + + T S+ +
Sbjct: 928  GHPVETY-DWLAQQRHTQLVSTLTSEQPAQILV--YITKVRTIRTKRGQPMAFATGSDLS 984

Query: 1025 KEYEANFFP 1033
             E +   FP
Sbjct: 985  GEIDLTIFP 993


>gi|194467803|ref|ZP_03073789.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23]
 gi|194452656|gb|EDX41554.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23]
          Length = 1115

 Score =  863 bits (2231), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1031 (33%), Positives = 544/1031 (52%), Gaps = 53/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F  L V SSYSLL+    +++++         A+A+TD N L+ A+EF   A  AGI+P
Sbjct: 2    DFTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +L + + +             T   +V L     GYQ L++L +         + V
Sbjct: 62   ILGLRLVVALNET----------DGTKLDLVFLAKNQRGYQHLMDLSTLQQTRKD--KKV 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + ++ +  +  E  I++         ++  F+        L     L  D   + L  +
Sbjct: 110  PLTVTQISPLLDELFIIIP-------PQSTVFSVLAQPTSILTELANLGDDDSVL-LGVN 161

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRV 248
               D  +   + QL+    LPLV T+   +L+  D  A  VL A+     +         
Sbjct: 162  SRLDDVQIDTLQQLSKQLSLPLVGTSPVDYLNANDLFASRVLQAIDAGVELKDPTIEAGR 221

Query: 249  TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               HYL ++ ++V  +    L  A + TVE+A  C+  LQ  AP+LP F  +        
Sbjct: 222  RGQHYLYSKEQVVQDYKAKGLSAAAQKTVEVATLCNVELQFRAPVLPHFKNQAGI----S 277

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  LR+  + GL+ R     +A G   Q Y++RL  EL VI  M F  YFLIV D + +
Sbjct: 278  SQQYLRSLCIQGLKKRR----VAPGKTIQQYQERLAMELKVIHEMGFDDYFLIVWDVMNF 333

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I   PGRGS AGS+ AYAL IT++DPL++ LLFERFLNP+R  MPD D+D   +R
Sbjct: 334  AHQQKITTDPGRGSAAGSLVAYALAITEVDPLQYDLLFERFLNPERAQMPDIDLDIPDNR 393

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEV++YV  KYGH+RVAQIITFG+L AK  +RDV R   +P   + RL   +P+     
Sbjct: 394  RDEVLQYVHQKYGHQRVAQIITFGTLAAKQVVRDVSRVFNLPRYDMQRLIDALPHGLHVT 453

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A+ +  + +     +P    L++++Q+LEGL RH S HAAGIV+ ++PL ++VP+ 
Sbjct: 454  LK-DALKESQQLKNLLDDNPKFRLLIQVAQQLEGLPRHYSIHAAGIVLSEQPLHEVVPLQ 512

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D    L +TQF    +E  GL+K DFLGLK L+++  +L  + Q     DL  I F+D 
Sbjct: 513  -DGSDGLLMTQFAKDTVEALGLLKMDFLGLKNLSIMDNTLQMIRQEDPNFDLQKINFNDS 571

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T GIFQ ESSG+R  L  + P   EDI+A+ +LYRPGP++NI  +  RK 
Sbjct: 572  LTLQLFQRGKTEGIFQFESSGIRNVLVNLHPTNFEDIVAVNALYRPGPMENIPHFTARKA 631

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GKEKI    P ++ +L  T G+++YQEQVMQ+A +++G++L EAD+LRRAM KK K  M+
Sbjct: 632  GKEKIAYPAPSLEKILGPTYGILVYQEQVMQLASVMAGFTLGEADLLRRAMSKKKKATME 691

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              + +FI+GA+++G S  +A  +FE + +FA+YGFN+SHA AY++++++ A++K HYP  
Sbjct: 692  DMRTKFIAGATEHGYSAQVAHQVFEYIDRFANYGFNRSHAVAYSMMAFEMAYLKVHYPAA 751

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  A M  E  N+EK+K+   DA+QF ++I  P +N     F + D  +Y+  +AIKGV 
Sbjct: 752  FFTALMNAET-NIEKLKRHVGDAKQFGVKISGPRINISESSFLLHDGTVYFGFSAIKGVR 810

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+E    +  F  L +F +R+  +   + ++E L+++GA D  GY+R +++ +L
Sbjct: 811  RDFVAAILEERQENGKFTDLRNFITRIPERWQKQELIEPLIYSGAFDNMGYNRAEMIDAL 870

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLGFYF 963
              +    +            +FA          +  +++ +      R   E   LG Y 
Sbjct: 871  PKLISGIE------------LFAGFANFDDPTLQTAIDQRNEFPLLTRLTKENEYLGVYL 918

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSE 1022
            SGHP+  Y  + +++      +       +   +  +    +   T++  R + +V  ++
Sbjct: 919  SGHPVTQYYQLGQQLHATKIADLYP---NSEATIIVLTNHVKTIYTKREHREMAFVNGTD 975

Query: 1023 PAKEYEANFFP 1033
                 +   FP
Sbjct: 976  ETGAVDITVFP 986


>gi|296132555|ref|YP_003639802.1| DNA polymerase III, alpha subunit [Thermincola sp. JR]
 gi|296031133|gb|ADG81901.1| DNA polymerase III, alpha subunit [Thermincola potens JR]
          Length = 1028

 Score =  863 bits (2230), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/1029 (30%), Positives = 515/1029 (50%), Gaps = 50/1029 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ +S L+GA  + +++ K      PAIA+TD NNL  A++F Q A AAGI+P
Sbjct: 2    SFVHLHVHTPFSFLDGAGKIEDLIAKAVEMGCPAIAMTDHNNLCGAVKFHQLATAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ +                     + LL     GY  L  +++  +L +  +   
Sbjct: 62   IIGTEITM----------------QDGHHLTLLARNPLGYANLCRILTDGHL-NSPRGYP 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             + LS L +     +I+L+G   G I         + A      +  LF     ++ LQ 
Sbjct: 105  TVKLSTLAK-HCRDIIILSGCRMGKIPSLILRGRFREALNTAAEYLHLFGRSNFFLELQP 163

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
                  +   + + QLA   ++ +VATNN  + ++E +  HD+L  V   T +       
Sbjct: 164  PLLPGSQALNNYLAQLAEQLKMDIVATNNVHYCTKEGFPVHDLLTCVRTLTKLEDVHPER 223

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R+  ++ LK+ +EM ++F   P A+ NT+ IA RC+  L+    I P F     +     
Sbjct: 224  RLNAENDLKSPAEMANLFYQYPRAVHNTLMIADRCAPALKPPEKIFPSFPVPSGEPA--- 280

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     G   R        G   +   +RL+ EL++I R+ +  YFL+V D + +
Sbjct: 281  -AAYLRRLTYEGARKRY-------GRLTRAITERLEHELDIICRLGYEDYFLLVWDLVDY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AKK  I    GRGS A S  AY L IT++D +   LLFERF++ +R   PD DIDF    
Sbjct: 333  AKKQKIRYA-GRGSAADSAVAYCLFITEVDSINRGLLFERFMSLERAQKPDIDIDFDSRY 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD V  Y+  KYG  RVA + T+ + +A++A RD+G+A+  P  ++D + K +P   A  
Sbjct: 392  RDRVADYLYKKYGSNRVAGVCTYNTFRARSAFRDLGKAMDFPAEEIDLIAKRLPFIRADQ 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            + L A+      RE  L      +L      + G  R  STH  GIV+   PL  L P+ 
Sbjct: 452  IDL-ALEKFPELREGGLPLEKYRQLFGYCTAVSGFPRFISTHLGGIVVSRDPLVNLTPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            +  +  + V+QF+ ++IE  GL+K D L L+T+++++ +   +     + D   IP +D 
Sbjct: 511  KAAK-GIVVSQFDKEYIEDLGLVKLDLLSLRTMSVVENATLTIRAENPEFDYETIPLNDK 569

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
             TY LL T  T+G+FQLES   R     +Q  C+EDI+A V+L RPGPI   +   +  R
Sbjct: 570  ATYELLNTGQTIGVFQLESPAQRALQSRLQASCLEDIVASVALIRPGPIKGNMVEPFIAR 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKE 723
            ++GKE +  +HP + P+L++T GV+++QEQV++IA +++G++  EAD LRR M   +  E
Sbjct: 630  RHGKEPVSYLHPKLKPILEKTYGVVLFQEQVIEIATVIAGFTPGEADRLRRVMTHARSHE 689

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M      F++ A  NGISK IA  IF  +  +A YGF ++HAAA+A  +Y+TA++  HY
Sbjct: 690  DMLGIGREFVAKAIANGISKEIAETIFGYIVGYASYGFCEAHAAAFATTAYKTAYLVKHY 749

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P E+ AA ++ +          C +AR+  I I+PP +N    DF V    I  SL+ +K
Sbjct: 750  PAEYYAAILSHQPMGFYGSNTICVEARRRGINILPPDINLSQRDFTVEKGNIRISLSQVK 809

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            G+  +   +I+      PF  ++DF +RV   K++R +L  L+  GA D    +R QLL 
Sbjct: 810  GMKASVLDNILAERNIAPFSGIDDFLNRV---KIDRALLTHLILCGAFDSLHSNRKQLLW 866

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             ++  + +   ++K              G+    +   + +  +   +F  E ++LG   
Sbjct: 867  WVNQQRTF--KLQKEERVCQN-------GSLPVNLPWPEIADYSEVEKFNWEYKILGIDV 917

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
              H +  ++  L K G     +  +   G  ++ A + +   +  TR G    +++  + 
Sbjct: 918  RRHYMSYWRAYLDKHGFTNSLKIKSLPHGAKVKAAGLPIRPHRPPTRSGKVAVFLSLEDE 977

Query: 1024 AKEYEANFF 1032
                +   F
Sbjct: 978  FGLVDVTLF 986


>gi|227544900|ref|ZP_03974949.1| possible DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300910073|ref|ZP_07127533.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri
            SD2112]
 gi|227185112|gb|EEI65183.1| possible DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300892721|gb|EFK86081.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri
            SD2112]
          Length = 1115

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/1031 (33%), Positives = 542/1031 (52%), Gaps = 53/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F  L V SSYSLL+    +++++         A+A+TD N L+ A+EF   A  AGI+P
Sbjct: 2    DFTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +L + + +             T   +V L     GYQ L++L +    L Q ++  
Sbjct: 62   ILGLRLVVALNET----------DGTKLDLVFLAKNQRGYQHLMDLST----LQQTRKDK 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            +I L+  Q     G + +       +       +S      L     L  D   + L  +
Sbjct: 108  KIPLTIAQISSLLGELFIIIPPQSTVFSILAQPTS-----ILTELANLGDDDSVL-LGVN 161

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRV 248
               D  +   + QL+    LPLV T+   +L+  D  A  VL A+     +       R 
Sbjct: 162  SRLDDVQIDTLQQLSKQLSLPLVGTSPVDYLNANDLFASRVLQAIDAGVELKDPTIEARR 221

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               HYL ++ ++V  +    L  A + TVE+A  C+  LQ  AP+LP F  +        
Sbjct: 222  RGQHYLHSKEQIVQDYNAKGLSAAAQKTVEVAALCNVELQFRAPVLPHFKNQAGIP---- 277

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  LR+  + GL+ R     +A G   Q Y++RL  EL VI  M F  YFLIV D + +
Sbjct: 278  SQQYLRSLCIQGLKKRR----VAPGKTIQQYQERLAMELKVIHEMGFDDYFLIVWDVMNF 333

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I   PGRGS AGS+ AYAL IT++DPL++ LLFERFLNP+R  MPD D+D   +R
Sbjct: 334  AHQQKITTDPGRGSAAGSLVAYALAITEVDPLQYDLLFERFLNPERAQMPDIDLDIPDNR 393

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEV++YV  KYGH+RVAQIITFG+L AK  +RDV R   +P   + RL   +P+     
Sbjct: 394  RDEVLQYVHQKYGHQRVAQIITFGTLAAKQVVRDVSRVFNLPRYDMQRLIDALPHGLHVT 453

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A+ +  + +     +P    L++++Q+LEGL RH S HAAGIV+ ++PL ++VP+ 
Sbjct: 454  LK-DALKESQQLKNLLDDNPKFRLLIQVAQQLEGLPRHYSIHAAGIVLSEQPLHEIVPLQ 512

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D    L +TQF    +E  GL+K DFLGLK L+++   L  + Q     DL  I F+D 
Sbjct: 513  -DGSDGLLMTQFAKDTVEALGLLKMDFLGLKNLSIMDNILQMIRQEDPNFDLQKINFNDP 571

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T GIFQ ESSG+R  L  + P   EDI+A+ +LYRPGP++NI  +  RK 
Sbjct: 572  LTLQLFQRGKTEGIFQFESSGIRNVLVNLHPTNFEDIVAVNALYRPGPMENISHFTARKA 631

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GKEKI    P ++ +L  T G+++YQEQVMQ+A +++G++L EAD+LRRAM KK K  M+
Sbjct: 632  GKEKITYPAPSLEKILGPTYGILVYQEQVMQLASVMAGFTLGEADLLRRAMSKKKKATME 691

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              + +FI+GA+++G S  +A  +FE + +FA+YGFN+SHA AY++++++ A++K +YP  
Sbjct: 692  DMRTKFIAGATEHGYSAQVAHQVFEYIDRFANYGFNRSHAVAYSMMAFEMAYLKVYYPAA 751

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  A M  E  N+EK+K+   DA+QF +++  P +N     F + D  +Y+  +AIKGV 
Sbjct: 752  FFTALMNAET-NIEKLKRHVGDAKQFGVKVSGPRINISESSFLLHDGTVYFGFSAIKGVR 810

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+E    +  F  L +F +R+  +   + ++E L+++GA D   Y+R +++ +L
Sbjct: 811  RDFVAAILEERQENGKFTDLRNFIARIPERWQKQELIEPLIYSGAFDKMEYNRAEMIDAL 870

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYF 963
              +    +            +FA         +   +++ +      R   E   LG Y 
Sbjct: 871  PKLISGIE------------LFAGFANFDDPALQTAIDQRNEFPLLTRLTKENEYLGVYL 918

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSE 1022
            SGHP+  Y  + +++              +   +  +    +   T++  R + +V  ++
Sbjct: 919  SGHPVTQYYQLGQQLHATKIANLYPH---SEATIIVLTNHVKTIYTKREHREMAFVNGTD 975

Query: 1023 PAKEYEANFFP 1033
                 +   FP
Sbjct: 976  ETGAIDITVFP 986


>gi|146345343|gb|ABQ23683.1| DNA polymerase III alpha subunit [Lactobacillus reuteri]
          Length = 1111

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/1031 (33%), Positives = 542/1031 (52%), Gaps = 53/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F  L V SSYSLL+    +++++         A+A+TD N L+ A+EF   A  AGI+P
Sbjct: 2    DFTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +L + + +             T   +V L     GYQ L++L +    L Q ++  
Sbjct: 62   ILGLRLVVALNET----------DGTKLDLVFLAKNQRGYQHLMDLST----LQQTRKDK 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            +I L+  Q     G + +       +       +S      L     L  D   + L  +
Sbjct: 108  KIPLTIAQISSLLGELFIIIPPQSTVFSILAQPTS-----ILTELANLGDDDSVL-LGVN 161

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRV 248
               D  +   + QL+    LPLV T+   +L+  D  A  VL A+     +       R 
Sbjct: 162  SRLDDVQIDTLQQLSKQLSLPLVGTSPVDYLNANDLFASRVLQAIDAGVELKDPTIEARR 221

Query: 249  TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               HYL ++ ++V  +    L  A + TVE+A  C+  LQ  AP+LP F  +        
Sbjct: 222  RGQHYLHSKEQIVQDYNAKGLSAAAQKTVEVAALCNVELQFRAPVLPHFKNQAGIP---- 277

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  LR+  + GL+ R     +A G   Q Y++RL  EL VI  M F  YFLIV D + +
Sbjct: 278  SQQYLRSLCIQGLKKRR----VAPGKTIQQYQERLAMELKVIHEMGFDDYFLIVWDVMNF 333

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I   PGRGS AGS+ AYAL IT++DPL++ LLFERFLNP+R  MPD D+D   +R
Sbjct: 334  AHQQKITTDPGRGSAAGSLVAYALAITEVDPLQYDLLFERFLNPERAQMPDIDLDIPDNR 393

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEV++YV  KYGH+RVAQIITFG+L AK  +RDV R   +P   + RL   +P+     
Sbjct: 394  RDEVLQYVHQKYGHQRVAQIITFGTLAAKQVVRDVSRVFNLPRYDMQRLIDALPHGLHVT 453

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A+ +  + +     +P    L++++Q+LEGL RH S HAAGIV+ ++PL ++VP+ 
Sbjct: 454  LK-DALKESQQLKNLLDDNPKFRLLIQVAQQLEGLPRHYSIHAAGIVLSEQPLHEIVPLQ 512

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D    L +TQF    +E  GL+K DFLGLK L+++   L  + Q     DL  I F+D 
Sbjct: 513  -DGSDGLLMTQFAKDTVEALGLLKMDFLGLKNLSIMDNILQMIRQEDPNFDLQKINFNDP 571

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T GIFQ ESSG+R  L  + P   EDI+A+ +LYRPGP++NI  +  RK 
Sbjct: 572  LTLQLFQRGKTEGIFQFESSGIRNVLVNLHPTNFEDIVAVNALYRPGPMENISHFTARKA 631

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GKEKI    P ++ +L  T G+++YQEQVMQ+A +++G++L EAD+LRRAM KK K  M+
Sbjct: 632  GKEKITYPAPSLEKILGPTYGILVYQEQVMQLASVMAGFTLGEADLLRRAMSKKKKATME 691

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              + +FI+GA+++G S  +A  +FE + +FA+YGFN+SHA AY++++++ A++K +YP  
Sbjct: 692  DMRTKFIAGATEHGYSAQVAHQVFEYIDRFANYGFNRSHAVAYSMMAFEMAYLKVYYPAA 751

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  A M  E  N+EK+K+   DA+QF +++  P +N     F + D  +Y+  +AIKGV 
Sbjct: 752  FFTALMNAET-NIEKLKRHVGDAKQFGVKVSGPRINISESSFLLHDGTVYFGFSAIKGVR 810

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+E    +  F  L +F +R+  +   + ++E L+++GA D   Y+R +++ +L
Sbjct: 811  RDFVAAILEERQENGKFTDLRNFIARIPERWQKQELIEPLIYSGAFDKMEYNRAEMIDAL 870

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYF 963
              +    +            +FA         +   +++ +      R   E   LG Y 
Sbjct: 871  PKLISGIE------------LFAGFANFDDPALQTAIDQRNEFPLLTRLTKENEYLGVYL 918

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSE 1022
            SGHP+  Y  + +++              +   +  +    +   T++  R + +V  ++
Sbjct: 919  SGHPVTQYYQLGQQLHATKIANLYPH---SEATIIVLTNHVKTIYTKREHREMAFVNGTD 975

Query: 1023 PAKEYEANFFP 1033
                 +   FP
Sbjct: 976  ETGAIDITVFP 986


>gi|310830390|ref|YP_003965491.1| hypothetical protein PPSC2_p0029 [Paenibacillus polymyxa SC2]
 gi|309249857|gb|ADO59423.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 1305

 Score =  861 bits (2226), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1068 (33%), Positives = 564/1068 (52%), Gaps = 70/1068 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS YSLL+G   +++I+ K         AITD   +F  LE+ ++   AG  P
Sbjct: 147  RWADLHRHSGYSLLDGGSKISDIVRKTEYAG----AITDHGAMFGTLEYYKQMRKAGKLP 202

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +   +     K  N           ++LL    EG++ L++L S+    +   +  
Sbjct: 203  ILGFEAYAETIQGEKKGN----------HLLLLAKNEEGFKNLVKLTSKSQ--ENFFRKP 250

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             +    L   G +G+I  T      + +    N  + A+       ++F  +  YV LQR
Sbjct: 251  HVNYDMLGTYG-KGIISSTSCMGSEVSQLLLKNKYEDAKYVAKALAEIFGKEDYYVELQR 309

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +R    Q++Q+A   +L ++ T +S +  +ED   H+VL+ +     +S  DR +
Sbjct: 310  HGFDEERIVNPQLIQIARELDLKIIGTTDSHYTEKEDAYDHEVLLCIGTVKKMSDYDRMQ 369

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRFIEKECDDIQK 305
                 ++L    E+  +FSD+PEALENT+EIA +CS   L+++   +P+F          
Sbjct: 370  FPGTGYHLHTSDEVEELFSDIPEALENTLEIAEKCSGLTLEMNKVYMPKFNVPA---PFV 426

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E + L++ A  G + R            ++YR+RL FEL VI  M F GYFLIV DF+ 
Sbjct: 427  NEMDYLKHLAWQGFKERFE----GTEKDNEEYRERLTFELEVIKGMGFPGYFLIVGDFVD 482

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK+  I VGPGRGS  G++TAY L ITD+DP+   LLFERFLNPDR+SMPD D+DF  D
Sbjct: 483  FAKRKGILVGPGRGSVVGALTAYCLHITDLDPIPLGLLFERFLNPDRVSMPDIDMDFPDD 542

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI YV+NKYG   V++IITFG++ A+AA++DVGR L  P S   ++ K IP  P  
Sbjct: 543  RREEVIDYVKNKYGEHAVSRIITFGTMAARAAIKDVGRVLDYPVSMTAKIAKSIPAVPKM 602

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP- 544
             +  +A  +   F +    +  V ++++I+ KLEGL RHAS HA G+VI    +S  +P 
Sbjct: 603  TIK-KAFKESPEFLKMYETEADVKKIVDIAMKLEGLPRHASMHACGVVIAPSSISDYIPE 661

Query: 545  -MYRDVRSDL--PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
             +  +  + L    TQFNM   E+ G++K DFLGL+T+T++ KSL  +  R ++      
Sbjct: 662  ILMENKETKLKERTTQFNMAECEEMGILKMDFLGLRTMTVISKSLSNVNPRRIREGKKPL 721

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC----------IEDIIAL 646
                IP +D   Y  +    + G+FQLES GMR  ++ +  D            E +IA 
Sbjct: 722  HYLDIPLNDKRVYQDIAKGESYGVFQLESGGMRSFMKELFADALQTGENTMELFERLIAG 781

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            VSLYRPGP+D I  Y       E I   HP +  +L+ T GVI+YQEQ M I + L+ ++
Sbjct: 782  VSLYRPGPLDYIPDYLKNMQNPENIQYDHPKLKSILEFTYGVIVYQEQCMFIVRELADFT 841

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
              EAD +R+A  KK ++ +    E+F++G  K GIS+ +A  I+  + KF +Y FNKSHA
Sbjct: 842  KGEADNVRKAFSKKKEKMIKPLGEKFVAGCLKKGISQEVAERIWGKMRKFGEYAFNKSHA 901

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
             AY+V+S  TAW+K +YPVEF+ A +   ++  +K+K F    ++  I+I+PP V+    
Sbjct: 902  GAYSVLSVVTAWLKFYYPVEFMTAVLNSYINKADKLKLFLSVVKKMKIEILPPDVDRSGQ 961

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-DSKKLNRRVLESL 885
             F V  +RI + L  IKG+G  +   I E +A+  F+  +D   R+    K+++++LE++
Sbjct: 962  MFTVDGDRIRFGLQGIKGLGKASENVIEERAANGEFEDFQDLAERMAKHSKVDKKILEAM 1021

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFS 944
            V++G++D F  +R   L+ LD I   A   +K   +   ++F+  E+     KI +    
Sbjct: 1022 VYSGSVDSFPGTRSAKLEVLDKILASASDEKKMHNSGQMDLFSMYEEFKVYKKIVIPDKK 1081

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG------IKGYEESVATI-------- 990
              +   + E E+   GFY S HPLD Y     + G      IK  E+   TI        
Sbjct: 1082 EFHKKFKLEKEKEYAGFYISEHPLDEYASYFAREGVYEIGFIKHEEDEDETIEVEGEVFG 1141

Query: 991  -----RGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFF 1032
                  G  +++A ++   +   T++  + +   T  +   E +   F
Sbjct: 1142 GDTNYDGEVVKVAGIITDLKTFYTKRDQKELKVFTLEDRTGEMKVVCF 1189


>gi|330808697|ref|YP_004353159.1| Error-prone DNA polymerase [Pseudomonas brassicacearum subsp.
            brassicacearum NFM421]
 gi|327376805|gb|AEA68155.1| Error-prone DNA polymerase [Pseudomonas brassicacearum subsp.
            brassicacearum NFM421]
          Length = 1025

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/1038 (28%), Positives = 464/1038 (44%), Gaps = 82/1038 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  +  L   S++S   GA S   +  +   +   A+AITD   L   +   Q A    +
Sbjct: 2    SVEYAELHCLSNFSFQRGASSALELCRRARQEGYQALAITDECTLAGIVRAWQAAKELEL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            Q I+G ++ ++                  P +VLLV   EGYQ L  L++R     + K 
Sbjct: 62   QLIVGSEIQVENG----------------PKLVLLVENLEGYQALCRLITRARRRSE-KG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              RI      +             SG +           AE+     + +F  RL++ +Q
Sbjct: 105  HYRIVREDFDQ-----------PLSGLLALWIAEGKD--AEEHGRWLQSIFAGRLWLTVQ 151

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
             H    DR R +  + LA   +LP+VA+ +            D + A+ H   V++   R
Sbjct: 152  LHCGQDDRRRLADSLALAERLDLPVVASGDVHMHVRGRRALQDTMTAIRHHVTVAEAGQR 211

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 +H+L++R ++  ++      L+ T+ IARRC+F L       PR +  E  D   
Sbjct: 212  LHPNGEHHLRSRKDLADLYPRA--LLDETLNIARRCTFDLGQLRYQYPRELVPEGHD--- 266

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     G+  R   GA  K       R ++D EL++IA + +  YFL V D + 
Sbjct: 267  -PASWLRELTERGMRERWKDGATDK------VRAQIDKELSLIAELGYDSYFLTVQDIVS 319

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S   YAL IT+IDP   SLLFERFL+ +R   PD D+DF  D
Sbjct: 320  FARSRHI-LCQGRGSAANSAVCYALGITEIDPSLTSLLFERFLSRERNEPPDIDVDFEHD 378

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV++YV  +YG  R A      S     A+RDV +AL +P  QV+ L          
Sbjct: 379  RREEVLQYVFQRYGRHRAALTAVVSSYHGAGAVRDVAKALGLPPDQVNALADCCGRWS-- 436

Query: 486  PVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                       R RE       P + R+L ++++L G  RH S H  G VI ++PL  LV
Sbjct: 437  ----DEAPPVERLREGGFDPDSPVLRRVLSLTRQLIGFPRHLSQHPGGFVISEQPLDTLV 492

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+     ++  + Q++   ++  GL+K D L L  L+ +++  D +   RG +  L+ +P
Sbjct: 493  PVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLIEHYRGQRYALASLP 552

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--V 660
             +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +   
Sbjct: 553  QNDRATYEMISRADTIGVFQIESRAQMSMLPRLRPKTFYDLVIEVAIVRPGPIQGGMVHP 612

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+N +E +      +  +L  T GV ++QEQVMQIA + + Y+  EAD LRR+M   
Sbjct: 613  YLRRRNKEEAVTYPSEALKQVLNRTLGVPLFQEQVMQIAIVAADYTPGEADQLRRSMAAW 672

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    ++  +ER   G  KNG +   A  IFE +  F +YGF +SHAA++A+++Y ++W+
Sbjct: 673  KRHGGLEPHRERLAQGMKKNGYTAEFAAQIFEQIKGFGNYGFPESHAASFALLTYASSWL 732

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----R 834
            K H P  F  A +           +  QDAR+  + I P  V     D  +         
Sbjct: 733  KCHEPAAFACALINSWPMGFYSPDQILQDARRHQLSIRPVDVRASDWDCSLEPMEGRQPA 792

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I   L  +KG     AR I  A   +PF  + D   R      + R L  L  AGAL   
Sbjct: 793  IRMGLRMVKGFREEDARRIEAARRHRPFSDVADLGERAQL---DARALAQLADAGALQGL 849

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
               R +    +  +QK               +FA         + L K ++  +      
Sbjct: 850  AGDRHRARWEVAGVQK------------QLGLFAGLPSQEEPPVALPKPTLGEN---LFA 894

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +   LG     HPL + +P LR    +   E      G N+ +A +V  +Q+  T  G  
Sbjct: 895  DYTTLGTTLGPHPLALLRPELRARRCRSSRELQDVEHGRNVSVAGLVTGRQRPGTASG-- 952

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + +VT  +         +
Sbjct: 953  VTFVTLEDEFGNLNVVVW 970


>gi|294671267|ref|ZP_06736119.1| hypothetical protein NEIELOOT_02976 [Neisseria elongata subsp.
            glycolytica ATCC 29315]
 gi|291306994|gb|EFE48237.1| hypothetical protein NEIELOOT_02976 [Neisseria elongata subsp.
            glycolytica ATCC 29315]
          Length = 997

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/881 (40%), Positives = 511/881 (58%), Gaps = 22/881 (2%)

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV--VQLAYTHELPLVATNNS 217
                   AE     +  LF +  Y+ LQR      +  S      LA    LP+VAT+ +
Sbjct: 1    MNGHEAAAEAAAEKYAALFPNAFYLELQRLPEKPEWERSVAGSTALARKLNLPVVATHPT 60

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVE 276
             FL  ED+ AH+  + +A    ++ + RPR  +P  Y      M   F+DLPEALENTVE
Sbjct: 61   QFLEPEDFLAHEARVCIAEGWTLADRKRPREFSPSQYFVGAETMAERFADLPEALENTVE 120

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYH 333
            IA+RC+  + +    LP F   +   +    ++ L   +  GL+ R   L      +   
Sbjct: 121  IAKRCNIHITLGKNFLPLFPTPDGLSL----DDYLVKLSNEGLQERMVQLYPDEAERAAK 176

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              +Y++RLDFELN+I +MKF GYFLIV DFI WAK +  PVGPGRGSGAGS+ AY+L IT
Sbjct: 177  MPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKIT 236

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            D+DPL+++LLFERFLNP+R+SMPDFD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ 
Sbjct: 237  DLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMS 296

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLL 512
            +KA +RDVGR L++P++  D+L KLIP +   P+ L  A+  + + +E   A    D L+
Sbjct: 297  SKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELI 355

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             +++KLE L R    HA G++I    +S   P+Y+   S  PV+ ++   +E  GL+KFD
Sbjct: 356  TLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFD 415

Query: 573  FLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGL+ LT+++ + + +       VD+  IP DD   Y +     T  +FQ ES+GM++ 
Sbjct: 416  FLGLRNLTIIEMAQNNIKNTTGDIVDVGTIPLDDQAAYKIFRDANTTAVFQFESTGMKKM 475

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            L+       E++IA VSLYRPGP+DNI  +  R  G+E    IHPL++ +L  T G+++Y
Sbjct: 476  LKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVY 534

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQ AQ++ GYSL  AD+LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF 
Sbjct: 535  QEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFN 594

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             + KFA YGFNKSHAAAYA+ISYQTAW+K HYP EF+AA+M+ E+ + +++K F +DA  
Sbjct: 595  YMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAATMSSELTDTDQLKLFYEDALA 654

Query: 812  FNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
              I  +PP +N     F   G+  I Y+L A+KGVG    + I+EA  D  F  L DFC 
Sbjct: 655  NGITFLPPDINESDYLFTPDGERHIRYALGAVKGVGEGAVQSIVEARQDGRFRDLFDFCE 714

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RV  + +N+R LESL+ AGA D    +R  LL ++D     A+    N       +F   
Sbjct: 715  RVGKEHMNKRTLESLIKAGAFDGTNPNRAMLLANIDLAIGNAEQQAANAN--QGGLFDFA 772

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
            +      I + + +    +V+   E+ V+GFYFSGHP   Y   +R+   +   +     
Sbjct: 773  EDAIG-AIEMVETAPWGDAVKLAEEKSVIGFYFSGHPFGPYAEEIRRFAPQKLSKLKPQ- 830

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
              +++R+A    + +    + G    +V   +     EA  
Sbjct: 831  --DSVRVAGFATAIRTIMGKNGKL-AFVRLEDTEGSAEAIV 868


>gi|167754597|ref|ZP_02426724.1| hypothetical protein CLORAM_00099 [Clostridium ramosum DSM 1402]
 gi|167705429|gb|EDS20008.1| hypothetical protein CLORAM_00099 [Clostridium ramosum DSM 1402]
          Length = 1017

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/1023 (34%), Positives = 564/1023 (55%), Gaps = 52/1023 (5%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQV+SSYS     + + +++ K +     A+A+TD +N++ A+E ++ A   GI+ + G
Sbjct: 4    HLQVYSSYSFQNSTILIEDLVKKASDLHYEALALTDKDNMYGAMELAKYAKKYGIKAVFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             +  +++                +  ++LL     GY  L+++ S + L ++G     I 
Sbjct: 64   LEASVEINHE-------------IYPLLLLARDVTGYFDLVKITSEICLSERGA----IS 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L  +  E L +++    G I+R         A K L  FK  F +  YV LQ H   
Sbjct: 107  LEALS-LYREHLFVISACKEGIIERLILKELDSEALKYLELFKNTF-NNFYVGLQNHGIA 164

Query: 193  DRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             + +   ++V LA    +P+  TN   +L++++    D+L A A    +   +    T  
Sbjct: 165  MQQKLNERLVALATLQNIPICVTNEVRYLNKDEAFTLDLLQASAKGM-MLDLEHQVQTDQ 223

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             YLK+  EM S+F    + +ENT +I R C+  +      LP++   +  D      + L
Sbjct: 224  LYLKSSFEMESLFD--KKYIENTNDIIRLCNVTIPTDQMHLPKYPVPKDGDAG----DYL 277

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R   + GL+ R     I       +Y +RL  EL VI +M F+ YFLIV D++++AK + 
Sbjct: 278  RQLCLVGLKKRFKGKNI-----PNEYIERLKKELTVINKMGFNDYFLIVFDYVRYAKMHK 332

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I VGPGRGS AGS+ AY L IT +DPLR+ LLFERFLN +R+SMPD DIDF  DRRDEV+
Sbjct: 333  ILVGPGRGSAAGSLVAYVLGITGVDPLRYDLLFERFLNEERISMPDIDIDFQDDRRDEVV 392

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             YV  KYGHE VAQI+TF +   K A++D+G+ L +P  +++ L K IP +  +  S + 
Sbjct: 393  NYVTEKYGHEHVAQIVTFSTYGPKVAIKDLGKVLGVPLPRLELLTKNIPTNYKNRKSARE 452

Query: 492  IADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            + + S  F+     DP++ +++     +E L R+ STHAAG+V+ +  L Q+VP+ R   
Sbjct: 453  VFETSYSFQSMVNKDPALRKIMPAVFIVEKLPRNISTHAAGVVLSNDVLDQVVPLVRGPN 512

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
            + + VTQ++  +IE+ GL+K DFLGLK LT++   +  +A+   V+++++ I   D +TY
Sbjct: 513  NGV-VTQYSKDYIEEVGLLKMDFLGLKNLTIIDYIIKDIAKNHQVEININDIDLQDKKTY 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             +++   T GIFQLESSGM+  L  MQ DC++D+IA ++L+RPGP+ NI  Y  RK GKE
Sbjct: 572  EMISRGDTFGIFQLESSGMKNLLVKMQCDCLDDVIAAIALFRPGPMANIPSYIARKKGKE 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I      + P+LK T G+++YQEQ+MQ AQL++G+SL++AD+LR+AM KK    M   K
Sbjct: 632  PITYPLECLKPILKSTYGILLYQEQIMQAAQLVAGFSLAKADILRKAMSKKTASLMKAMK 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G   NG S+  AV +FEL+ +FA+YGFNKSH+  Y  I+Y  A++K ++P+EF +
Sbjct: 692  SEFIQGGIANGFSELEAVKVFELIERFANYGFNKSHSVVYGYIAYWLAYLKANFPLEFFS 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++ E  +        Q+ +++ ++++ PS+N     FKV D  I YSL AIK VG   
Sbjct: 752  ALLSNEQSSDASKLSCIQEGKKYGVKLLAPSINYSTDRFKVEDGNIRYSLLAIKNVGYAG 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
             + I     +  F  + DF SR++S KLN ++L+SL+ AGA D F  +R  + Q+L  I 
Sbjct: 812  YKAIEAERQNGTFKDIFDFVSRMESSKLNSKMLDSLIMAGAFDEFKLNRTTIKQNLHKIM 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA+                      ++  +     +N     E E+ VLG Y + HP+ 
Sbjct: 872  EYAELKN---------------SIGIEEPPILTIVRDNRIKVLEEEKMVLGVYLTMHPIA 916

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            + K  L++  I    E    I    +R+   +   +    +KG  + +V   +   E +A
Sbjct: 917  LIKNNLKEQ-IVNLNELSNYID-QPVRVIMALSRVKVIVDKKGQEMCFVDGYDETGEVDA 974

Query: 1030 NFF 1032
              F
Sbjct: 975  VVF 977


>gi|237733766|ref|ZP_04564247.1| DNA polymerase III dnaE [Mollicutes bacterium D7]
 gi|229383104|gb|EEO33195.1| DNA polymerase III dnaE [Coprobacillus sp. D7]
          Length = 977

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1023 (35%), Positives = 564/1023 (55%), Gaps = 52/1023 (5%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQV+SSYS     + + +++ K +     A+A+TD +N++ A+E ++ A   GI+ + G
Sbjct: 4    HLQVYSSYSFQNSTILIEDLVKKASDLHYEALALTDKDNMYGAMELAKYAKKYGIKAVFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             +  +++                +  ++LL     GY  L+++ S + L ++G     I 
Sbjct: 64   LEASVEINHE-------------IYPLLLLARDVTGYFDLVKITSEICLSERGA----IS 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L  +  E L +++    G I+R         A K L  FK  F +  YV LQ H   
Sbjct: 107  LEALS-LYREHLFVISACKEGIIERLILKELDSEALKYLELFKNTF-NNFYVGLQNHGIA 164

Query: 193  DRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             + +   ++V LA    +P+  TN   +L++++    D+L A A    +   +    T  
Sbjct: 165  MQQKLNERLVALATLQNIPICVTNEVRYLNKDEAFTLDLLQASAKGM-MLDLEHQVQTDQ 223

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             YLK+  EM S+F    + +ENT +I R C+  +      LP++   +  D      + L
Sbjct: 224  LYLKSSFEMESLFD--KKYIENTNDIIRLCNVTIPTDQMHLPKYPVPKDGDAG----DYL 277

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R   + GL+ R     I       +Y +RL  EL VI +M F+ YFLIV D++++AK + 
Sbjct: 278  RQLCLVGLKKRFKGKNI-----PNEYIERLKKELTVINKMGFNDYFLIVFDYVRYAKMHK 332

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I VGPGRGS AGS+ AY L IT +DPLR+ LLFERFLN +R+SMPD DIDF  DRRDEV+
Sbjct: 333  ILVGPGRGSAAGSLVAYVLGITGVDPLRYDLLFERFLNEERISMPDIDIDFQDDRRDEVV 392

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             YV  KYGHE VAQI+TF +   K A++D+G+ L +P  +++ L K IP +  +  S + 
Sbjct: 393  NYVTEKYGHEHVAQIVTFSTYGPKVAIKDLGKVLGVPLPRLELLTKNIPTNYKNRKSARE 452

Query: 492  IADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            + + S  F+     DP++ +++     +E L R+ STHAAG+V+ +  L Q+VP+ R   
Sbjct: 453  VFETSYSFQSMVNKDPALRKIMPAVFIVEKLPRNISTHAAGVVLSNDVLDQVVPLVRGPN 512

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
            + + VTQ++  +IE+ GL+K DFLGLK LT++   +  +A+   V+++++ I   D +TY
Sbjct: 513  NGV-VTQYSKDYIEEVGLLKMDFLGLKNLTIIDYIIKDIAKNHQVEININDIDLQDKKTY 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             +++   T GIFQLESSGM+  L  MQ DC++D+IA ++L+RPGP+ NI  Y  RK GKE
Sbjct: 572  EMISRGDTFGIFQLESSGMKNLLVKMQCDCLDDVIAAIALFRPGPMANIPSYIARKKGKE 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I      + P+LK T G+++YQEQ+MQ AQL++G+SL++AD+LR+AM KK    M   K
Sbjct: 632  PITYPLECLKPILKSTYGILLYQEQIMQAAQLVAGFSLAKADILRKAMSKKTASLMKAMK 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G   NG S+  AV +FEL+ +FA+YGFNKSH+  Y  I+Y  A++K ++P+EF +
Sbjct: 692  SEFIQGGIANGFSELEAVKVFELIERFANYGFNKSHSVVYGYIAYWLAYLKANFPLEFFS 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++ E  +        Q+ +++ ++++ PS+N     FKV D  I YSL AIK VG   
Sbjct: 752  ALLSNEQSSDASKLSCIQEGKKYGVKLLAPSINYSTDRFKVEDGNIRYSLLAIKNVGYAG 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
             + I     +  F  + DF SR++S KLN ++L+SL+ AGA D F  +R  + Q+L  I 
Sbjct: 812  YKAIEAERQNGTFKDIFDFVSRMESSKLNSKMLDSLIMAGAFDEFKLNRTTIKQNLHKIM 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA+                      D+  +     +N     E E+ VLG Y + HP+ 
Sbjct: 872  EYAELKN---------------SIGIDEPPILTIVRDNRIKVLEEEKMVLGVYLTMHPIA 916

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            + K  L++  I    E    I    +R+   +   +    +KG  + +V   +   E +A
Sbjct: 917  LIKNNLKEQ-IVNLNELSNYID-QPVRVIMALSRVKVIVDKKGQEMCFVDGYDETGEVDA 974

Query: 1030 NFF 1032
              F
Sbjct: 975  VVF 977


>gi|160915308|ref|ZP_02077521.1| hypothetical protein EUBDOL_01317 [Eubacterium dolichum DSM 3991]
 gi|158433107|gb|EDP11396.1| hypothetical protein EUBDOL_01317 [Eubacterium dolichum DSM 3991]
          Length = 1027

 Score =  859 bits (2220), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1025 (33%), Positives = 576/1025 (56%), Gaps = 44/1025 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL V S+Y+LL+  L++  I+         ++A+TD N +  A+ F        I+PI 
Sbjct: 3    VHLHVRSAYTLLQSTLTIPKIIACTKQHGYQSVALTDKNVMHGAMAFYHACIKENIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +++    ++                 +LL    +GY  L++L +   LL+ G+ + ++
Sbjct: 63   GMEVEAAYDND-------------SLGFILLAKNDQGYVDLMKLST---LLNTGEHAKQV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
                L  + T+  ++LT G    ++         +  K L    + F D  YV++ R+  
Sbjct: 107  SFEELC-LYTKDCVVLTNGDQNIMETYLVKEEIGLLSKLLQLCTQSFTD-FYVSIARNDS 164

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G  + +  ++  L    ++  VA +   F  E + E++  L A+ H  V         +P
Sbjct: 165  GLLKSKNPRLKSLCKEMKIRTVALSRIYFQDEAEEESYKTLCAI-HQQVSVDDRMLNFSP 223

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              Y ++++EM  ++ +  E L  + EIA +C+  +Q    ILP+F  K         E  
Sbjct: 224  KRYYRSQAEMAQLYDE--EDLLASEEIAAKCNVKMQFPQAILPKFKNKYG----VSSEEF 277

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LRN    GL  R+   AI K      Y+QRL++EL+VI  M ++ YFLIV DFI++AK  
Sbjct: 278  LRNLCHKGLAKRMHFQAIPK-----VYQQRLEYELDVIINMHYADYFLIVWDFIRFAKSQ 332

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            NI +GPGRGS AGS+ +Y L IT +DPL+++LLFERFLNP+R+SMPD D DF  +RRDEV
Sbjct: 333  NIYIGPGRGSAAGSLVSYCLGITHVDPLQYNLLFERFLNPERVSMPDIDTDFPDNRRDEV 392

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I YV+  YG  R + IITF +L AK  LRDVGRA+ +   ++D LCK++P+ P   +   
Sbjct: 393  IEYVKGLYGSHRASHIITFNTLAAKQVLRDVGRAMNISLREIDSLCKMVPSMPKVTLDY- 451

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               + +RF++   +     +L  IS++LEGL RHAS HAAGIV+ +  +S + P+  DV 
Sbjct: 452  TYENSARFKQKINSSQLYRKLFAISKQLEGLPRHASLHAAGIVLSNDAISSVCPLI-DVD 510

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETY 609
            + +  TQF M ++E+ GLIK DFLGL+ LT++ + ++ + +      D+  IP +D +T+
Sbjct: 511  AGISATQFTMDYMEELGLIKMDFLGLRNLTIIDEVVNLINRDHENKLDIMHIPLNDKKTF 570

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L+    T+G+FQLES GM+  L  M+P C EDI+A V+L+RPGP++NI  Y  R+   +
Sbjct: 571  ALIQAVDTVGVFQLESEGMKNLLRKMKPTCFEDIVATVALFRPGPMENIPEYLERRANPQ 630

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  IHPL+ P+L+ T G++IYQEQ+MQ+AQ+++G+SL +AD LR+A+ KK  EE+ + K
Sbjct: 631  KVDYIHPLLKPILENTYGIMIYQEQIMQVAQVMAGFSLGKADNLRKAISKKKGEELARLK 690

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI GA + G  + +A++++EL+ KFA+YGFN+SH+ AY +I+YQ A++K + P+ F  
Sbjct: 691  NDFIQGAKQKGFEEQLAIHVYELIMKFANYGFNRSHSVAYGMIAYQMAYLKANAPLYFFV 750

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            + +   + +  K  ++  +A++  I I+ PSVN     +++    + + L  IKG+G   
Sbjct: 751  SLLNSMIGSESKTSEYIFEAKKRGISILLPSVNFSGNGYRIEKRSLRFPLNGIKGIGNAV 810

Query: 850  ARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
               I++       F    DF +R+ +  + ++ +E L++AGALD F  +R  ++ +L++ 
Sbjct: 811  CSQILKERNSHGKFRDYFDFVARMSAIHIGKKTMEILIYAGALDEFNINRSSMIATLEDA 870

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +Y + V+    ++   +FA E  +    I+++    E+ S+  E E+  LGFY S HP+
Sbjct: 871  LRYGELVKIEDADQI--LFAFELVSKPAIISVK----EHRSMLVEKEKECLGFYLSSHPI 924

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            ++ +  +    +       A      +R   M+   +Q +T+ G+ + +   ++   + +
Sbjct: 925  ELLRKRMNAQ-LAPLIALKAQR--GYVRFLCMIERVKQHRTKNGALMAFAVSADETSKID 981

Query: 1029 ANFFP 1033
                P
Sbjct: 982  LVCMP 986


>gi|317121639|ref|YP_004101642.1| DNA polymerase III subunit alpha [Thermaerobacter marianensis DSM
            12885]
 gi|315591619|gb|ADU50915.1| DNA polymerase III, alpha subunit [Thermaerobacter marianensis DSM
            12885]
          Length = 1264

 Score =  858 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/1105 (28%), Positives = 517/1105 (46%), Gaps = 98/1105 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  HS+YS L+GA  +  ++++ A    PA+A+TD +N+  A+EF + A AAGI+PI
Sbjct: 2    FVHLHCHSAYSFLDGASPVQALVERAAGLGMPALALTDHDNVAGAVEFDRAARAAGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFP---------TVPSIVLLVSTAEGYQRLIELVSRMYL 121
             G +L + + +    +  G +  P             +VLL +   GY RL  L++R +L
Sbjct: 62   QGVELTLLLDEPAGSSGGGTSERPLTAPRGGELATAHLVLLATGPAGYARLCRLLTRAHL 121

Query: 122  LDQGKQSVRICLSWLQE--------IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             +Q +    +  S L E        +   GLI L+G   GP+ +A        A +R   
Sbjct: 122  -EQPRGRPALPWSVLLEEVAPGGEPLPGHGLIALSGCRRGPVLQALLQGDRATALERARR 180

Query: 174  FKKLF-GDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             +  F  +  ++ LQ      +R     +  LA    + +VATN+  + + + +  HD+L
Sbjct: 181  LRDTFGREHFFLELQGGWLPGNRALNRTLADLAEHLGVGVVATNDVHYATRDRFAVHDLL 240

Query: 232  MAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
              V     V +   +  +  ++ LK+   M  +F+  P+AL+ T+ IA RC  +L   A 
Sbjct: 241  ACVRLGIPVDEPHPQRHLNAENDLKSPRAMAQMFAGYPQALKATLAIAERCQPVLPAGAV 300

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
              P F            E  LR +   G   R        G      RQRL+ EL +I +
Sbjct: 301  PRPAFPLPPGI----RAEAYLREQVERGALWRY-------GRITPRIRQRLEHELRIIEK 349

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            ++ + YFL+V D  ++A++  I    GRGS A S  AY L ITD+D +   LLFERFL+ 
Sbjct: 350  LQLADYFLLVWDVARYARQQGIRCA-GRGSAADSAVAYCLGITDVDAIERGLLFERFLSL 408

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R   PD DIDF    RD+V  YV+ +YG E VA + T+ +  A+ ALRD G+AL  P +
Sbjct: 409  ERAEQPDIDIDFDARYRDQVADYVEQRYGPEHVATVCTYQTYHARGALRDFGKALGFPTA 468

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
             +DR+ K +P   +  +  +A+ +    R+  L      RL+++ +   GL RH  TH  
Sbjct: 469  VIDRIAKRVPYALSRHLG-RALEEVPELRDLDLPRERFRRLVDLCEAAAGLPRHMGTHLG 527

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VI  RPL +L P+ R  +    + QF+ + +E+ GL+K D L L+TL  +++++  + 
Sbjct: 528  GLVISRRPLVELSPLQRSAK-GRRILQFDKRGVEELGLVKLDLLPLRTLGAVEEAVRVIR 586

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            +R    D   IP DD  TY LL T  T+G FQLES   R     ++P+ +ED++A V++ 
Sbjct: 587  RRDPAFDYDRIPLDDRATYELLRTGETVGAFQLESPAQRALQPRLKPENLEDVVASVAII 646

Query: 651  RPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGPI  D +  +  R+ G+E +  +HP ++P+L++T GV+++QEQV++IA  ++G++  
Sbjct: 647  RPGPIKGDMVEPFLARRRGREPVTYLHPKLEPILRKTWGVVLFQEQVIEIATAIAGFTPG 706

Query: 709  EADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EAD LRR M   +  E+M+     F+  A + G+ + +A  IF ++  +A YGF ++HAA
Sbjct: 707  EADRLRRVMTHARSPEDMEDIGRHFLRRAREQGVDEAVAQAIFRMIQGYASYGFCEAHAA 766

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            A+ V +Y+TA++  HYP E+ AA ++L+          C +A +  I+I+P  +N   V 
Sbjct: 767  AFGVTAYKTAYLLAHYPAEWYAALLSLQPMGYYPPNTLCVEAARRGIRILPLDINASQVG 826

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRV-------------- 872
            F      I   L A+KG+G   A  I+       PF    DF  R+              
Sbjct: 827  FAATPGAIRIGLRAVKGLGEEPAAAIVAERERGGPFRHFMDFLLRMAGSSAGGGDWGEAA 886

Query: 873  -----------------------DSKKLNRRVLESLVFAGALDCFGYSR----------- 898
                                    S        ++    G  D  G+ R           
Sbjct: 887  DTTSGEAAGRPAGGGPGTKPDGEPSAPSGAPAAQAGGKTGRPDGRGHRRGSGSPRGPVLD 946

Query: 899  ---------MQLLQSLDNIQKYAQW-VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
                           L   ++   W +++              G  +   +         
Sbjct: 947  RDQVAALIRAGAFDGLHPNRRALLWGLDEALAAARSAAGGELAGALAAAWSPPAVDDFPE 1006

Query: 949  SVRFENEQRVLGFYF-SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              ++  E+ VLG      H L + + +L   G +          G ++R A + V   + 
Sbjct: 1007 LEKWAMEREVLGIDVHRRHLLAMLREVLDARGYRSAAAIRRLPAGASVRAAGIPVRPHRP 1066

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             TR G  I ++T  +     +   F
Sbjct: 1067 PTRSGRIIVFLTLEDETGLVDVTVF 1091


>gi|297618290|ref|YP_003703449.1| DNA polymerase III subunit alpha [Syntrophothermus lipocalidus DSM
            12680]
 gi|297146127|gb|ADI02884.1| DNA polymerase III, alpha subunit [Syntrophothermus lipocalidus DSM
            12680]
          Length = 1031

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/1029 (29%), Positives = 525/1029 (51%), Gaps = 55/1029 (5%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL VHS +S L+G  S+ +++D+ A    PA+A+TD +NL  A++F  +A  AGI+PI G
Sbjct: 2    HLHVHSCFSFLDGGSSIKSLVDRAAESGMPALALTDHDNLCGAVQFKLEAQKAGIKPIQG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             ++ +                     + LL    EGY+ L  ++++ +L D  ++  +  
Sbjct: 62   VEVTVAGG----------------YHLTLLAEDEEGYRNLCRILTKAHL-DNPRRQPQAG 104

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR-HR 190
            L  L+E   EG+I L+G   G I           A +  L + +++  D  Y+ LQ  + 
Sbjct: 105  LDILKE-HAEGIIALSGCRKGEIPARILSRQYDAAYRAALAYLEIWGKDGFYLELQDTYL 163

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST--VVSQKDRPRV 248
               R     + +LA    + +VATNN  +   ED++ HD+L  V   T       +RP +
Sbjct: 164  PGTRTLNRDLAELAEKLGVGVVATNNVHYACPEDFKVHDILTCVRTLTRVYEVHPERP-L 222

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +++LK   EM  +F + P+A+ NT EIA RC   L+  A + PRF         +  E
Sbjct: 223  NAENHLKPEREMKKLFREYPQAVANTWEIAERCRPSLEPGASLFPRFNPPPG----QTAE 278

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR  A  G   +        G   +   +RL+ E+++I  + ++ YFL+V D +++A+
Sbjct: 279  SLLRELAYRGARKKY-------GRVTRRVEERLEHEIHIINTLGYADYFLVVWDIVEYAR 331

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I    GRGS A S  AY L IT++D L   LLFERF++ +R   PD DIDF    RD
Sbjct: 332  RQGIR-HTGRGSVADSFVAYCLGITEVDSLARGLLFERFMSLERAEKPDIDIDFDARWRD 390

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             +  YV  KYG ++VA++ T+ + +A++A+R++G+AL +P +++DR+ K +P        
Sbjct: 391  RISEYVTRKYGEDKVAKVCTYSTYRARSAVRELGKALGLPEAELDRVAKRLPYGAYADRI 450

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
               ++     RE+ L       LL++ +++ G  R   TH  G+V+   PL  + P+ + 
Sbjct: 451  RDMLSLLPELRESGLDRDKFALLLDLCERVAGFPRFLGTHLGGLVVSREPLCDITPLQQS 510

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
             + +  VTQF+   +E+ GL+K D L L+ ++ ++ ++  + Q     D   IP DD  T
Sbjct: 511  AKGE-IVTQFDKDDVEELGLVKLDLLSLRAMSAVEDTVRAVKQEKKTFDYEKIPLDDDAT 569

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKN 666
            Y ++    T+G+FQLES   R     +    IEDI+A V+L RPGPI   +   Y +R+ 
Sbjct: 570  YRMINKGQTIGVFQLESPAQRALQARLGASDIEDIVASVALIRPGPIKGNMVEPYISRRQ 629

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEM 725
            G+E +  +HP ++P+L +T GVI++QEQV++IA  ++ ++  EAD LR+ M   + ++ M
Sbjct: 630  GREPVTFLHPALEPILAKTYGVILFQEQVIEIATAIARFTPGEADRLRKVMTHARSQKVM 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+    FI  A +NG+S+  A  IF+ +A +A YGF ++HAAA+A  SY+TA++  HYP 
Sbjct: 690  DEVGREFIKKAVENGVSQEAAATIFKAMAGYASYGFCEAHAAAFATTSYKTAYLLRHYPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            +F AA ++ +            +AR+  I+I+PP +N     F+V    I   LA +KG+
Sbjct: 750  QFYAAVLSNQPMGYYPPHVILNEARRRGIKILPPCINRSGEAFRVEKGGIRIPLARVKGL 809

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 + I+      PF SL +   +       R  +++L+  GALD F  +R +LL   
Sbjct: 810  SREGLKKILVYR---PFASLTEVWEKTGLA---RDEMKNLIKCGALDVFDTNRRRLL--- 860

Query: 906  DNIQKYAQWVEKNRTNK--HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
                K  +   + +      E I A + G  +D              ++  E  +LG   
Sbjct: 861  ---VKARKLYFRPQPAGNVKEGIIAFDDGEAADAKM--DIPDFTEDEKYAMEFEILGLSP 915

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
              H +  ++  L++ G K   +  A   G+ +++A +++   +  T+ G    +++  + 
Sbjct: 916  REHLMARFRGYLKRNGFKSSRDLAALPDGSWVKVAGVLLCPHRPPTKSGRITVFMSLEDE 975

Query: 1024 AKEYEANFF 1032
                +   F
Sbjct: 976  FGLTDVTVF 984


>gi|170721609|ref|YP_001749297.1| error-prone DNA polymerase [Pseudomonas putida W619]
 gi|169759612|gb|ACA72928.1| DNA polymerase III, alpha subunit [Pseudomonas putida W619]
          Length = 1026

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1039 (28%), Positives = 471/1039 (45%), Gaps = 82/1039 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P +  L   S++S   GA S   +L +       A+AITD   L   +   Q A A  
Sbjct: 2    SAPGYAELHCLSNFSFQRGASSAEELLRRAREQGYQALAITDECTLAGIVRAWQAAKAQQ 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+ I+G ++ +                   P +VLLV    GYQ L  L++R     Q K
Sbjct: 62   IRLIVGSEVRLHNG----------------PKLVLLVQDLSGYQNLCALITRARRRAQ-K 104

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             S ++    L+E+   GL+ L              +S  +A  +    + +FG+RL++ +
Sbjct: 105  GSYQLFPDDLRELHR-GLLAL----------WLAEDSRDLATGQ--WLQGVFGERLWLGV 151

Query: 187  QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              HRG  D  R +++  LA    +  VA  +            D + A+     V++  R
Sbjct: 152  HLHRGSDDETRLARLRGLAGQLGIRAVACGDVHMHVRGRRALQDCMTAIRQHCSVAEAGR 211

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  + +L+   ++  ++    + L  T+ IA RC F L       PR +  E     
Sbjct: 212  FLFANGERHLRTLEQLAELYP--ADLLSETLCIAERCQFDLGELRYQYPRELVPEG---- 265

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +   + LR     GL  R   G   K       R+ L  EL +IA + +  YFL V D +
Sbjct: 266  QTPASWLRQLCERGLAHRWPSGPSDK------VREVLAKELALIAELGYESYFLTVHDIV 319

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+  +I +  GRGS A SV  + L IT++DP++  LLFERFL+ +R   PD D+DF  
Sbjct: 320  AFARSQHI-LCQGRGSAANSVVCFVLGITELDPMKHRLLFERFLSRERNEPPDIDVDFEH 378

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVI+YV  +YG  R A      +  A  A+RDV R L +P  QVD L K       
Sbjct: 379  DRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARVLGLPADQVDALAKCCGRWSD 438

Query: 485  HPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                   I D+ R  EA      PS+ R+L ++ +L G  RH S H  G VI ++PL  L
Sbjct: 439  R------IPDEQRLAEAGFEPGSPSLRRILVLAAQLIGFPRHLSQHPGGFVISEQPLDHL 492

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+     ++  V Q++   ++  GL+K D L L  L+ L++  D + Q RG  + L+ I
Sbjct: 493  VPVENAAMAERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLMQQHRGRHLTLATI 552

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D + 
Sbjct: 553  PAEDPATYAMISRAETMGVFQIESRAQMAMLPRLKPSTFYDLVIEVAIVRPGPIQGDMVH 612

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+  +E +      +  + + T GV ++QEQVM++A + + YS  EAD LRR+M  
Sbjct: 613  PYLRRRLKQEPVTYPSLKLKEVFERTLGVPLFQEQVMELAMVAADYSPGEADQLRRSMAA 672

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    ++  +ER + G  +NG     A  IFE +  F  YGF +SHAA++A++ Y ++W
Sbjct: 673  WKRHGGLEPHRERLVQGMLRNGYDLAFAERIFEQIKGFGSYGFPESHAASFALLCYASSW 732

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDN 833
            +K H P  F  A +           +  Q+AR+  I++ P  V     D  +     G  
Sbjct: 733  LKCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVGHSQWDCTLEPVAEGAL 792

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I   L  I+G     AR +  A A +P+  +ED C R     L+ R    L  AGAL  
Sbjct: 793  AIRLGLRQIRGFAEADARRLEAARARRPWRDVEDLCLRA---GLDSRARARLADAGALRA 849

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R Q    +                    +FA  + T    + L   +V        
Sbjct: 850  LARDRHQARWQV------------AAVQPQLPLFAELQATPEAAVALPAPTVGED---LV 894

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +   LG     HPL + +  LR +G +  +E      G+ + +A +VV +Q+ +T  G 
Sbjct: 895  ADYATLGTTLGPHPLTLLRSRLRVLGCRSSQELAGVEHGDAVAVAGLVVGRQRPQTASG- 953

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + +VT  +         +
Sbjct: 954  -VTFVTLEDEFGMVNVVVW 971


>gi|227893479|ref|ZP_04011284.1| possible DNA-directed DNA polymerase [Lactobacillus ultunensis DSM
            16047]
 gi|227864704|gb|EEJ72125.1| possible DNA-directed DNA polymerase [Lactobacillus ultunensis DSM
            16047]
          Length = 1035

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1024 (32%), Positives = 532/1024 (51%), Gaps = 44/1024 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    + ++L         A+ +TD N  +  + F + A  AGI+P++G 
Sbjct: 6    LQNLSSFTLLDSPTKIVDLLKTAKEKGYQAVGLTDVNVTYGLVNFYELAKRAGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
            Q+ ++          G         +++      GY  L+ L S + LL D G+    + 
Sbjct: 66   QVRLN----------GLIDSTQKYDLIVFAKNNAGYHNLLRLSSAINLLTDNGQNDKILT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L+ L +   + L+++   +   +    F  + Q+    +   KKL  + LY+ +      
Sbjct: 116  LTELTKYLDDLLVIVPANTHSEL-LNLFETNQQLGSDYIRDLKKLTSE-LYLGVYASNSS 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPRVTPD 251
            + Y +  V  LA   ELPLVAT +  +L   D      L A+     +       +    
Sbjct: 174  ESYVD-YVHALAKQFELPLVATEDCEYLRPRDQFLQKTLRAIRSGQKMQDTIPLAKQDGS 232

Query: 252  HYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            H+L N  EM+  +    L +A+ NT +IA  C+  +    P+LP++ +    D     E 
Sbjct: 233  HFLANAEEMLERYHRFNLDDAVNNTWKIAEECNAEVIFQKPVLPKYHQ----DKFATSEE 288

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L + A  GL+ R       KG    +Y++RL++EL VI +M F  YFLIV D I +  +
Sbjct: 289  YLHHLAQTGLQARF-----GKGKVPAEYQKRLNYELRVINQMGFDNYFLIVWDVINYCHR 343

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS  GS+ +YAL IT++DPL++ LLFERFLNP R  MPD D+D     RD 
Sbjct: 344  VKITTGPGRGSACGSLVSYALRITEVDPLKYHLLFERFLNPARHEMPDIDLDIPDIHRDT 403

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   +V++  + IP         
Sbjct: 404  VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEVNKWARAIPYSKDKMTLK 463

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +A  +    R    A P    L + + +LEGL RH S HAAG+VI D  ++ +  +    
Sbjct: 464  RAYEESRELRLLVDATPENKLLFKTAMELEGLPRHYSIHAAGLVISDDSIAGISGLQAGP 523

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ   K++E  GL+K DFLGL+ LT+L   LD + Q+GV +D + IP +D  T 
Sbjct: 524  L-GIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILDLVRQQGVNIDPNKIPLNDQATL 582

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  +FQ ES G+RQ L  + PD  ED++A+ +LYRPGP+ NI  +  RKNG+E
Sbjct: 583  KLFQEGKTDAVFQFESGGIRQVLRKLHPDDFEDLVAVNALYRPGPMQNIDTFIARKNGQE 642

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ +++++
Sbjct: 643  PVKYPDPSLKQILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQER 702

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI+G  K G  K +A  ++  + +FA+YGFN+SHA AY  I++  A++K HYP  F  
Sbjct: 703  SKFITGTVKKGHPKEVAERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFYT 762

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +        K + +   A++ +I I+ P +N   +D+ + +N I   L AIKG+    
Sbjct: 763  AMLNSSTAV--KAQGYIMQAQEADIHILAPDINRSHLDYSLENNDILVGLKAIKGLRVDF 820

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A+ I E      + SL DF  R+D+K L    +E+L+ AGA D    +R +LL +   I 
Sbjct: 821  AKEIAENKKQ--YKSLSDFLRRIDAKFLQVDAIEALIMAGAFDQIEDNRNELLANCKEII 878

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               Q   +N      ++             L+      ++ + E E++VLGF  +  PL 
Sbjct: 879  ANVQLTGQN-----ISL-----SEILGDAPLKPAEKPTNAEKAEMEEKVLGFATTTTPLV 928

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K   +   +      G ++     ++  +Q +T+ G  + + TF++ + + E 
Sbjct: 929  AVQKYAKKFDARALNQFQINESGISV---GKLMKYKQIRTKNGKTMAFATFADSSSQQEV 985

Query: 1030 NFFP 1033
              FP
Sbjct: 986  IIFP 989


>gi|104781527|ref|YP_608025.1| error-prone DNA polymerase [Pseudomonas entomophila L48]
 gi|95110514|emb|CAK15222.1| probable DNA polymerase III, alpha subunit [Pseudomonas entomophila
            L48]
          Length = 1026

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1039 (28%), Positives = 470/1039 (45%), Gaps = 82/1039 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P +  L   S++S   GA S + +  +       A+AITD   L   +   Q A A  
Sbjct: 2    STPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKAHE 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ IIG ++ +                   P +VLLV    GYQ L  L++R       K
Sbjct: 62   LRLIIGSEVQVH----------------QGPKLVLLVQDLHGYQNLCALITRARRR-ARK 104

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             S ++    L E   +GL+ L            +        +     + LFG+RL++  
Sbjct: 105  GSYQLLGEDL-EAHHQGLLAL------------WVAGPDEPSESGPWLRALFGERLWLAA 151

Query: 187  QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              HRG  D+ R + +        +PLVA  +    +       D + A+     V++   
Sbjct: 152  HLHRGADDQARLAWLRAQGLRLGVPLVACGDVHMHARGRRALQDCMTAIRAHCSVAEAGG 211

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  + +L+   ++  ++      L+ T+ IAR+C+F L       PR +  E     
Sbjct: 212  LLFANGERHLRPLDQLRELYP--APLLDETLNIARQCTFELSQLKYRYPRELVPEG---- 265

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR     GL  R   G   K       R  LD EL +I  + +  YFL V D +
Sbjct: 266  HSPASWLRALCEQGLPGRWPAGPSDK------VRAVLDKELALIEELGYESYFLTVHDIV 319

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A++  I +  GRGS A SV  + L IT++DP+   LLFERFL+ +R   PD D+DF  
Sbjct: 320  AFARRQRI-LCQGRGSAANSVVCFVLGITELDPMVHRLLFERFLSRERNEPPDIDVDFEH 378

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVI+YV ++YG  R A      S  A  A+RDV RAL +   QVD L K       
Sbjct: 379  DRREEVIQYVFSRYGRHRAALTAVVSSYHAAGAVRDVARALGLSADQVDALAKCCGRWSD 438

Query: 485  HPVSLQAIADDSRFREAR--LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                   I DD R  EA      PS+ R+L ++ +L G  RH S H  G VI ++PL QL
Sbjct: 439  R------IPDDQRLAEAGFDAQSPSLRRILVLAGELIGFPRHLSQHPGGFVISEQPLDQL 492

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLI 601
            VP+         V Q++   ++  GL+K D L L  L+ L++  D L   RG+++ L+ I
Sbjct: 493  VPVENATMEARTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLLYRHRGIELTLASI 552

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P DD  TY ++    T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D + 
Sbjct: 553  PPDDPATYAMIGRAETMGVFQIESRAQMAMLPRLRPENFYDLVIEVAIVRPGPIQGDMVH 612

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+  +E +      +  + + T GV ++QEQVM++A + + Y+  EAD LRR+M  
Sbjct: 613  PYLRRRLRQEPVTYPSEKLREVFQRTLGVPLFQEQVMELAMVAADYTPGEADQLRRSMAA 672

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    ++  ++R +SG  +NG     A  IFE +  F  YGF +SHAA++A++ Y ++W
Sbjct: 673  WKRHGGLEPHRQRLVSGMLRNGYELAFAERIFEQIKGFGSYGFPESHAASFALLCYASSW 732

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDN 833
            +K H P  F  A +           +  Q+AR+  I++ P  V     D  +     G+ 
Sbjct: 733  LKCHQPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVLHSAWDCTLEPVGEGEL 792

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I   L  ++G   T +R + +A A +P+  +ED C R     L+ R    L  AGAL  
Sbjct: 793  AIRLGLRQVRGFSETDSRRLEQARAQRPWRDVEDLCLRA---GLDSRARGRLADAGALRA 849

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R Q    +                    +FA  +      + L   +V   +    
Sbjct: 850  LAGNRHQARWQV------------AAVQAQLPLFAQVEPAPEPVVALPAPTV---TQDLH 894

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +   LG     HPL + +  LR +G +   E      G+NI +A +VV +Q+ +T  G 
Sbjct: 895  ADYDTLGTTLGPHPLSLLRSRLRALGCRSAGELAGVEDGDNIAVAGLVVGRQRPQTASG- 953

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + +VT  +         +
Sbjct: 954  -VTFVTLEDEHGMVNVVVW 971


>gi|307128611|ref|YP_003880641.1| DNA polymerase III subunit alpha [Candidatus Sulcia muelleri CARI]
 gi|306483073|gb|ADM89943.1| DNA polymerase III, alpha subunit [Candidatus Sulcia muelleri CARI]
          Length = 1379

 Score =  855 bits (2209), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/1063 (30%), Positives = 540/1063 (50%), Gaps = 59/1063 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            F H+  H+S+S+L   + +N+++ K       A+ ITD  N+     F +K         
Sbjct: 211  FSHIHNHTSFSILSSTIDINSLIKKTIEYNMDAVGITDYGNMMGVFNFIKKIKNLNDNNN 270

Query: 67   -IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
             I+PIIGC+L I    N  +    K     +   V       GY  L +L S  ++    
Sbjct: 271  KIKPIIGCELFISY--NYLIKKFTKQNPDKIYHQVFFAKNKNGYNNLSKLCSHGFIDGYY 328

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                RI  + +++   E LI ++G  +  I           AEK    +  LFGD  Y+ 
Sbjct: 329  SGIPRIGKNLIEKY-KENLIAISGDLNSEIPFTILNKGENEAEKVFKWWHNLFGDDFYIE 387

Query: 186  LQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK- 243
            + RH   +    ++ +++ +  + +  +A NN+ +LS++DY AHD+L+ V +S   S   
Sbjct: 388  ILRHGLEEEDHVNKILLKFSKKYNVKFIAQNNNFYLSQKDYNAHDILLCVKNSQKQSTPI 447

Query: 244  ------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                         + Y KN+ +M ++FSDLPEA +N  E+  +  F    +  +LP+F  
Sbjct: 448  GKGKGFRFGFPNKEFYFKNKFQMYNLFSDLPEAFDNLKELIEKVEFYDISNQILLPKFNI 507

Query: 298  KECDDIQKEEE----NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
                  +   +      LR     G + +               +++++FEL  I ++ +
Sbjct: 508  PNKWIKKNCNKNNENEYLRFLTYKGAKKKYID-------LNDRIKKKIEFELETIKKIGY 560

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFLIV D I  AK   I VGPGRGS AGSV AY L IT+IDP++++LLFERFLNPDR+
Sbjct: 561  PGYFLIVQDLIFKAKNIGIEVGPGRGSVAGSVVAYCLGITNIDPIKYNLLFERFLNPDRV 620

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            S+PD DIDF    R+++I +V NKYG  +VAQIIT+G + AK+++RD  R L +   + +
Sbjct: 621  SLPDIDIDFDDKGREKIIEWVVNKYGKNKVAQIITYGKMGAKSSIRDTARVLNLTLLETN 680

Query: 474  RLCKLIPN------DPAHPVSLQAIADDSRFREARLA-------DPSVDRLLEISQKLEG 520
            ++ K++PN            SL+ I ++                +    ++L+ +  +EG
Sbjct: 681  KIAKIVPNLSLKEIIKKKIKSLKEILNNEELENVIKLKKIFKKKNTLQSKILKQAMVIEG 740

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              R+   HA GI+I    +   +P+     S+  +TQF+   +EK GL+K DFLGLKTLT
Sbjct: 741  SVRNTGIHACGIIITPSDIKDYIPVSTTKDSNFLLTQFDNDVVEKVGLLKMDFLGLKTLT 800

Query: 581  LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +++++L  ++     + L  IP DD +TY L     T+ +FQ ES GM++ L  ++PD  
Sbjct: 801  IIKETLYLISN----LKLENIPLDDVKTYELFKKGETVAVFQYESPGMQKYLIQLKPDKF 856

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             D+IA+ +LYRPGP+  I  +  RK+G EKI    P +   L+ET G+ +YQEQVM I+Q
Sbjct: 857  YDLIAMNALYRPGPMQYIPNFIARKHGLEKISYDLPELKEFLEETYGITVYQEQVMLISQ 916

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             +SG+S  +AD LR+A+GKK K+ + K K +FI G  KNG S  I   I++    FA Y 
Sbjct: 917  KISGFSKGDADFLRKAIGKKDKKILFKIKNKFIYGGLKNGFSIKILEKIWKDWKAFASYA 976

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSH+  Y+ I++QTA++KTHYP E++A+ ++  M  ++ +  F ++ ++  + ++ P 
Sbjct: 977  FNKSHSTCYSYIAFQTAYLKTHYPAEYMASVLSNNMQKIKNVTFFIEECKRIGVIVLGPD 1036

Query: 821  VNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +N     F V       + L AIKG+G ++ + I++   ++ ++S+ +    VD + +N+
Sbjct: 1037 INESNYKFTVNKMGYIRFGLGAIKGIGESSVKSILKERKNR-YNSILELIKNVDLRLVNK 1095

Query: 880  RVLESLVFAGALDCF-GYSRMQLL------QSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            +VLE+LV +GA D      R Q          ++ + K+    +K + N    +F + K 
Sbjct: 1096 KVLENLVLSGAFDNLNNIHRYQYFYEENGSNMIEKMIKFGVKYKKLKKNVKNTLFRNVKD 1155

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR- 991
                +   +     N+  +   E+ V+G Y + HPL+ Y   ++       ++    I  
Sbjct: 1156 IEILEPKFKICKEWNNFYKLNKEKEVIGMYMTSHPLNEYNYEIKNFTNASLDDLNKNIEK 1215

Query: 992  --GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              G  + +  ++   +        +       +     E   F
Sbjct: 1216 NIGKILNICGIISKSRI---SNNKKYIIFLLEDYKSNKEFKLF 1255


>gi|77459371|ref|YP_348878.1| error-prone DNA polymerase [Pseudomonas fluorescens Pf0-1]
 gi|123604378|sp|Q3KBG7|DNAE2_PSEPF RecName: Full=Error-prone DNA polymerase
 gi|77383374|gb|ABA74887.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens Pf0-1]
          Length = 1025

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/1036 (27%), Positives = 471/1036 (45%), Gaps = 82/1036 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L   S++S   GA S   +  +       A+AITD   L   +   Q A +  +  
Sbjct: 4    GYAELHCLSNFSFQRGASSALELFQRAKKHGYQALAITDECTLAGIVRAWQAAKSVELPL 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ I+                  P +VLLV   EGYQ L  L+++     Q K   
Sbjct: 64   IIGSEIRIENG----------------PKLVLLVENIEGYQALCGLITQARRRTQ-KGQY 106

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            +I      E     L++    +   +             +     K+ FG+RL++ +Q H
Sbjct: 107  QILREDFSEPLPGLLVLWVPEAVDEV-------------EEGRWLKQTFGERLWLAVQLH 153

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
            RG  D+ R + ++ LA   ++P VA+ +    +       D + A+ H   V++   R  
Sbjct: 154  RGQNDQQRLAALLSLADELQIPAVASGDVHMHARGRRALQDTMTAIRHHVPVAEAGLRLH 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + +L++   +  ++      L+ ++++ARRC+F L       P+ +  E    +   
Sbjct: 214  PNGERHLRSLDVLRELYPQ--TLLDESLKLARRCTFDLGELRYQYPKELVPE----EHSA 267

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR+    G+  R  +GA  K        +++D EL +IA + +  YFL V D +++A
Sbjct: 268  SSWLRHLTEQGIAWRWPKGAQPK------VLKQIDDELELIAELGYESYFLTVHDVVRFA 321

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I +  GRGS A S   +AL IT+IDP R +LLFERF++ +R   PD D+DF  +RR
Sbjct: 322  REQKI-LCQGRGSAANSAVCFALGITEIDPDRTTLLFERFMSRERNEPPDIDVDFEHERR 380

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV  +YG  R A      +  A  A+RDV +AL +P  Q++ L     +      
Sbjct: 381  EEVLQYVFRRYGRRRAALTAVVSTYHASGAIRDVAKALGLPPDQINALADCCGHWSDETP 440

Query: 488  SLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++      R RE       P + R+L ++ +L G  RH S H  G VI ++PL  LVP+
Sbjct: 441  PVE------RLREGGFDPESPLLHRVLSLTGQLIGFPRHLSQHPGGFVISEQPLDTLVPV 494

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604
                 +D  + Q++   ++  GL+K D L L  L+ +++  D L   R   + L+ IP +
Sbjct: 495  ENAAMADRTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRHQDLSLATIPPE 554

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
            D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +   Y 
Sbjct: 555  DRPTYDMISRADTIGVFQIESRAQMSMLPRLRPQTFYDLVIEVAIVRPGPIQGGMVHPYL 614

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+N +E+     P ++ +LK T GV ++QEQVMQIA + + YS  EAD LRR+M   K 
Sbjct: 615  RRRNKEEEETYPSPELEVVLKRTLGVPLFQEQVMQIAIVAADYSPGEADQLRRSMAAWKR 674

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               ++  KER  +G  KNG S   A  IFE +  F  YGF +SHAA++A+++Y + W+K 
Sbjct: 675  HGGLEPHKERLAAGMKKNGYSPEFAAQIFEQIKGFGSYGFPESHAASFALLTYASCWLKC 734

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIY 836
            H P  F  A +           +  QDAR+ ++QI P  V     D  +         I 
Sbjct: 735  HEPAAFACALINSWPMGFYSPDQILQDARRHHLQIRPVDVRASDWDCSLEPIAGEQPAIR 794

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  IKG     AR I +A A   F  + D   R       + +L     AGAL     
Sbjct: 795  MGLRMIKGFREEDARSIEKARARGAFADVADLGERAGLDSRAQALL---ADAGALRGLAG 851

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R +    +  +QK               +FA         + L   SV   S     + 
Sbjct: 852  HRHRARWEVAGVQK------------QLGLFAGLPSQEEPDVLLPTPSV---SEDLFTDY 896

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LG     HPL + +  LR    +   + +    G  + +A +V  +Q+  T  G  + 
Sbjct: 897  ATLGTTLGPHPLTLLRNELRARRCRSSRDLLEVEHGRPVSVAGLVTGRQRPGTASG--VT 954

Query: 1017 WVTFSEPAKEYEANFF 1032
            +VT  +         +
Sbjct: 955  FVTLEDEFGNVNVVVW 970


>gi|293977832|ref|YP_003543262.1| DNA-directed DNA polymerase III (polc) [Candidatus Sulcia muelleri
            DMIN]
 gi|292667763|gb|ADE35398.1| DNA-directed DNA polymerase III (polc) [Candidatus Sulcia muelleri
            DMIN]
          Length = 1405

 Score =  853 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1070 (30%), Positives = 541/1070 (50%), Gaps = 69/1070 (6%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +   + K+  + H+  H+S+S+L   + +N+++ K       A+ ITD  NL     F  
Sbjct: 224  IENQISKNKYYSHIHNHTSFSILSSTIDINSLIKKTIEYDMDAVGITDYGNLMGVFNFIN 283

Query: 61   KAC--------AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            +             I+PIIGC+L I   D +K T++       + + V       GY  L
Sbjct: 284  RIKNINDNFLVKKKIKPIIGCELYISYNDLIKKTDK-------IYNQVFFAKNKNGYYNL 336

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             +L S  ++         I  + L E     LI ++G  +  I           AEK   
Sbjct: 337  SKLCSHGFIDGYYSGIPIIGKN-LVEKYKANLIAVSGDLNSEIPFTILNKGENEAEKVFK 395

Query: 173  TFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             +  LFGD  Y+ + RH   +    +Q +++ +    +  +  NN+ +LS++DY AHD+L
Sbjct: 396  WWHNLFGDDFYIEILRHGLKEEDHVNQILLKFSKKFNVKFIPQNNNFYLSQKDYHAHDIL 455

Query: 232  MAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
            + V +S   S                + Y KN+++M ++FSDLPEA +N  E+  +  F 
Sbjct: 456  LCVKNSQKQSTPIGKGRGFRFGFPNQEFYFKNKNQMYNLFSDLPEAFDNLKELIEKVEFY 515

Query: 285  LQVHAPILPRFIEKECDDIQK-----EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
               +  +LP+F        +       E   LR     G + +         Y     ++
Sbjct: 516  DITNKILLPKFDIPNKWIKKYCIKNNYENEYLRYLTYKGAKKKYL-------YINDIIKK 568

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            +++FEL  I ++ + GYFLIV D I  AK   + VGPGRGS AGSV AY L IT+IDP++
Sbjct: 569  KIEFELETIKKIGYPGYFLIVQDLICKAKNIGVEVGPGRGSVAGSVVAYCLGITNIDPIK 628

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            ++LLFERFLNPDR+S+PD DIDF    R+++I +V NKYG  +VAQIIT+G + AK+++R
Sbjct: 629  YNLLFERFLNPDRISLPDIDIDFDDKGREKIIEWVVNKYGKNKVAQIITYGKMGAKSSIR 688

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV----------- 508
            D  R L +P  + D + K++PN     +  + I    +   +   +  +           
Sbjct: 689  DTARVLNLPLLETDNIAKIVPNLSLKEIIKKNIKYLKKKLNSEELENVIKLKKIFKEKKT 748

Query: 509  --DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
               ++L+ +  +EG  R+   HA GI+I    + + +P+     S+L +TQF+   +E+ 
Sbjct: 749  LQSKILKQAMVIEGSVRNTGIHACGIIITPSDIKKYIPVSTTKYSNLLLTQFDNDVVEQV 808

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            GL+K DFLGLKTLT+++ +L  +      + L  +   D +TY L     T+ +FQ ES 
Sbjct: 809  GLLKMDFLGLKTLTIIKDTLYLIK-----IPLYEVNIYDVKTYKLFKKGETVAVFQYESP 863

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            GM++ L  ++PD  +D+IA+ +LYRPGP+  I  +  RK+G EKI    P +   L+ET 
Sbjct: 864  GMQKYLRRLKPDKFDDLIAMNALYRPGPMQYITNFIARKHGLEKISYDLPELKEFLEETY 923

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+ +YQEQVM I+Q +SG+S  +AD LR+A+GKK K+ +   K++FI G   NG SK I 
Sbjct: 924  GITVYQEQVMLISQKISGFSKGDADFLRKAIGKKDKDVLINIKQKFIDGGINNGYSKNIL 983

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              I++    FA Y FNKSH+  Y+ I+++TA++K HYP E++A+ ++  M N++ I  F 
Sbjct: 984  EKIWKDWKSFASYAFNKSHSTCYSYIAFKTAYLKAHYPAEYMASVLSNNMQNLKNITFFI 1043

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEASA--DKPFD 863
            ++ ++  + ++ P +N     F V       + + AIKG+G  +   I++     ++ ++
Sbjct: 1044 EECKRMGVIVLGPDINESNYKFTVNKMGYIRFGMGAIKGIGKYSVNSIIKERKLINR-YN 1102

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY--SRMQLL------QSLDNIQKYAQWV 915
            S+      VD + +N++VLE+LV +GA D F     R Q          ++ I K+    
Sbjct: 1103 SIFCLIKNVDLRLVNKKVLENLVLSGAFDNFKKKIHRSQYFYEENGSNMIEKIIKFGVKY 1162

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            +  + N   ++F++ K     +   +     N+    + E+ V+G Y + HPL+ Y    
Sbjct: 1163 KNLKINMKNSLFSNVKDIEILEPKFKNCKKWNNIDLLKKEKEVIGMYLTSHPLNEYVYET 1222

Query: 976  RKMGIKGYEES---VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            +       ++       I G  I +  ++     + ++   +       +
Sbjct: 1223 KYFTNASLDDINHNQEKILGKKINICGIISKSLHRISKNNKKYIIFLLED 1272


>gi|324008246|gb|EGB77465.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           57-2]
          Length = 773

 Score =  853 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/790 (43%), Positives = 494/790 (62%), Gaps = 34/790 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFLAASMTL 794
            EF+AA MT 
Sbjct: 764 AEFMAAGMTA 773


>gi|331701392|ref|YP_004398351.1| DNA polymerase III subunit alpha [Lactobacillus buchneri NRRL
            B-30929]
 gi|329128735|gb|AEB73288.1| DNA polymerase III, alpha subunit [Lactobacillus buchneri NRRL
            B-30929]
          Length = 1115

 Score =  853 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/1031 (32%), Positives = 536/1031 (51%), Gaps = 49/1031 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+V LQV SSYSLL+  + + +++ +       A+A+TD N ++ A+EF      A I+P
Sbjct: 2    SYVPLQVISSYSLLQSPIRIADLIAEAKDRGYQALALTDLNVMYGAVEFYDACLKAAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +I           L +   G          VL+    +GY  L++L +    +       
Sbjct: 62   LI----------GLTLQLPGLILTDKEYGWVLIAKNQQGYANLLKLSTLKMTM------P 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQ 187
             +  S L +  ++ +++L    +  ++       +  A   +   K L  D   L + + 
Sbjct: 106  ELTASQLGDYLSDLVLIL--PPAAEMNDLLLQGRADDAADLIDQVKSLGIDPNALKIGVD 163

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRP 246
             H          + +LA   ++ LVA +   +L+  DY +  VL  +     + +     
Sbjct: 164  YHSS--DSLNDMLSKLAADKQVALVADSPVEYLNATDYFSMQVLKNIGAGEKIANVAQFS 221

Query: 247  RVTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            +    ++L+  +++ + +    L +AL    +I   C+  ++   P LP+F      D  
Sbjct: 222  KQVGPYWLRPATQIEAQYRQVHLADALTQVDQIVADCNVEIKKQQPKLPQFDTPNGIDSG 281

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  LR     GL  RL +  I        Y +RLD EL+VI  M F  YFLIV D I
Sbjct: 282  T----YLRQLCETGLADRLKKNQITDATP---YHRRLDQELSVIHSMGFDNYFLIVWDVI 334

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A + +I  GPGRGS AGS+ AY LTITD+DP+++ LLFERFLNP+R+ MPD D+D   
Sbjct: 335  NFAHQTDIITGPGRGSAAGSLVAYTLTITDVDPIKYDLLFERFLNPERVQMPDIDLDIPD 394

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D+RDEVI+YV  KYGH+RVAQIITFG+L AK ++RDVGR   +  +Q D+  K IPN   
Sbjct: 395  DKRDEVIQYVHQKYGHKRVAQIITFGTLAAKQSIRDVGRVFGLNTAQQDQWSKAIPNAFH 454

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +   A+A+  R +      P  + L + +Q LEGL RH STHAAG+V+ D PL  LVP
Sbjct: 455  VTLK-DALANSQRLKNLVADSPLNEALYQTAQALEGLPRHYSTHAAGLVLSDDPLVNLVP 513

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +       L +TQ++  ++E  GL+K DFLGL+ L++L  +L+ +       +D+S +P 
Sbjct: 514  LQNG-NEGLLMTQYSKDYVESVGLLKMDFLGLRNLSILGDALEQVQLTTGKVLDISAVPL 572

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +T  L     T GIFQ ES+G+R  L  + P+  EDI  + +LYRPGP+ NI     
Sbjct: 573  DDAKTIQLFADGDTTGIFQFESNGIRNVLRRLHPERFEDIALVNALYRPGPMQNIDEVVK 632

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK   E +      +  +L+ T GVI+YQEQVM +A  ++G+SL +AD+LRRAM KK   
Sbjct: 633  RKTNHEALTYPDDSLKDILQPTYGVIVYQEQVMLVASKMAGFSLGQADILRRAMSKKKLG 692

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M++ K +F++GA + G S ++A  +F+ + +FA+YGFNKSHA AY+ ++Y+ A++K +Y
Sbjct: 693  VMEQMKAQFMTGAKQRGYSDSVANKVFDYIERFANYGFNKSHAVAYSKMAYELAYLKVYY 752

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P EF  A +    +N  K+K++ Q A+   ++++ P++N     F   D +I + L +IK
Sbjct: 753  PGEFHVALLNSVNNNSVKVKEYIQAAKSMGVKVVGPNINHSEARFTFQDQQIVFGLDSIK 812

Query: 844  GVGTT-TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GV        + E   + PF S  DF SR+  K     ++ +L++AGALD F ++R +L+
Sbjct: 813  GVRHDMVVDLLAERQQNGPFKSFPDFLSRLPGKYRKVELINALIYAGALDVFPFNRSELI 872

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             +               +    ++F       + +  + K        + E E   LG Y
Sbjct: 873  AAAPEFISSV-----ELSGNSMSLF------KALEPKMPKMPEMPLMDKLEKENAYLGAY 921

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             SGHP + + P+ +++  +      + +   NI L   +   +  +T+ G ++ ++  ++
Sbjct: 922  LSGHPTERFAPLAQRLNAETTATLSSGM--KNIYLILYITKVKIIRTKTGKQMAFLDGND 979

Query: 1023 PAKEYEANFFP 1033
               +     FP
Sbjct: 980  QVGQTSVTVFP 990


>gi|228982552|ref|ZP_04142811.1| hypothetical protein bthur0002_56850 [Bacillus thuringiensis Bt407]
 gi|228776735|gb|EEM25043.1| hypothetical protein bthur0002_56850 [Bacillus thuringiensis Bt407]
          Length = 1237

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/1068 (30%), Positives = 541/1068 (50%), Gaps = 71/1068 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +V L  H+ YSLL+GA  ++ ++ K       A AITD   ++  L+F +K   A  +P
Sbjct: 73   RYVSLHGHTGYSLLDGATKIHEMVAKTE----WASAITDHGVMYGTLDFYKKMKKANKKP 128

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +  I+  D  K               +LL   A GY+ L++L S  +  +      
Sbjct: 129  ILGFEAYIETLDGKKEGK----------HQLLLAINATGYRNLVKLTSMGF--ENKYYKP 176

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             + L WL++  +EG++  +    G + +A       +A K +     +F  +  Y+ +QR
Sbjct: 177  HVKLEWLEKY-SEGVVSTSSCLGGLVPQAIIKGDMDLARKTVQKMIDIFGKENYYIEIQR 235

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +      ++QLA    L  +AT++S +   ED   H++L+ +   T +   +R  
Sbjct: 236  HGCEEEEVVNPALLQLAEEFGLKAIATSDSHYTEIEDASVHEILLCIGTKTTMDDPNRMV 295

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +++    EM  +F D+PE L+NT+++A R +  +Q+    LP F   E     + 
Sbjct: 296  FPGSGYHIHTSEEMEDLFWDMPELLDNTLDLAERINIDIQLGEIYLPEFPLPEG---FES 352

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            + +   + A  G   R       K + +++YR+RL FE+  I  M F GYF+IV DFI++
Sbjct: 353  QADYFEHLAWEGFAKRFKG---QKEFKSKEYRERLTFEIETIKTMGFPGYFVIVWDFIRF 409

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+  I VGPGRGS  GS+ AYAL ITDIDP+ + L+FERFLNPDR+SMPD DIDF   R
Sbjct: 410  AKERGILVGPGRGSACGSLVAYALDITDIDPIPYGLIFERFLNPDRISMPDIDIDFEDTR 469

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI YV+  YG E V++IITFG+L AK ++RDV R L  P    + +   IP  P   
Sbjct: 470  REEVIDYVKELYGEEAVSRIITFGTLAAKVSVRDVARVLDKPLG--NMIANAIPEKPGMT 527

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP-- 544
            ++ +A+ +   F     +D  V  +++I+ ++EGL R+ S HA G++I    ++  +P  
Sbjct: 528  LN-KALNESPEFYNMYHSDAEVKEIVDIALRIEGLPRNVSQHACGVIIAPSAVTDHIPQV 586

Query: 545  MYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KVD 597
            +  +  +      TQ+N    E+ GL+K DFLGL+T+ ++ ++   + ++        + 
Sbjct: 587  LLENTDTGAYEHTTQYNKDECEEMGLLKMDFLGLRTMGVMGRAFIDINKKRKELGLEPIT 646

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC-----------IEDIIAL 646
            L  IP DD   Y  +    T G+FQLES+GM   +  +  D             E +IA 
Sbjct: 647  LESIPLDDIRVYEYIAKGNTAGVFQLESAGMTNFMMELFQDAHTLDAEMGKQLFERLIAG 706

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            +SLYRPGP+D I  Y       E I    P + P+L+ T  +I+YQEQ M I + L+ ++
Sbjct: 707  ISLYRPGPLDEIPNYIKNMLKPEGIEYDVPQLQPILETTYNIIVYQEQCMFIVRELANFT 766

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFAD 758
              ++D +R+ M KK++  +++  E F+         G   NGI + IA+ ++E + KF  
Sbjct: 767  RGQSDTIRKGMAKKVEALLNEYGEYFVHGSEEKGITGCVANGIDEHIAIALWERMKKFGR 826

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            Y FNKSHA  YA I+ +T ++  +YP E++ A++   +   +KIK +   +++  I ++P
Sbjct: 827  YAFNKSHATGYANIAIKTGFLAYYYPTEYMCATLNSFITMSDKIKAYMAVSKRQKIDVLP 886

Query: 819  PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-DSKKL 877
            P VN     F V  N I + L  I+ +G  + R I E      F + +D   R+   +K+
Sbjct: 887  PDVNKSREVFTVEGNSIRFGLQGIRNMGKISIRLIEERDTRGDFRNFQDCAVRMAKYQKV 946

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KGTFS 935
            +RRVLE+L+F+GA+D F  +R   L  LD +   A    K+  +   +IF          
Sbjct: 947  DRRVLEALIFSGAVDSFEGTRNSKLMMLDALLLVASQERKDYQSGQLSIFDIPLLSQDKI 1006

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK--------MGIKGYEESV 987
             ++     +  N   + E E+   GFY S HPLD Y+ +L +        +     ++  
Sbjct: 1007 REVLTPTLTEFNIDFKLEKEKEFAGFYISAHPLDSYETLLAEEEFCEIGFLQDTDEKDEA 1066

Query: 988  ATIR--GNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
              +R    +IR+A ++   +   T+K    +      +   E +   F
Sbjct: 1067 DRVRSYKKSIRVAGIITEIETYYTKKDNKPLNVFKLEDTTGEIKCVAF 1114


>gi|146282691|ref|YP_001172844.1| error-prone DNA polymerase [Pseudomonas stutzeri A1501]
 gi|145570896|gb|ABP80002.1| DNA polymerase III, alpha subunit, putative [Pseudomonas stutzeri
            A1501]
          Length = 1065

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/1035 (27%), Positives = 458/1035 (44%), Gaps = 81/1035 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + ++       A+AITD  +L   +   Q +   G+  I
Sbjct: 44   YAELHCLSNFSFQRGASSARELFERAKRQGYDALAITDECSLAGIVRAWQASKDTGLPLI 103

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ I+                  P +VLLV    GYQ L +L++R     + K   +
Sbjct: 104  IGSEVQIEGG----------------PKLVLLVENLTGYQALCQLITRARRRAE-KGRYQ 146

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                 L E   EGL+ +           +       A+       + F +RL++ ++ HR
Sbjct: 147  ALREDLSEGSLEGLLAI-----------WLPGH-AGADTDGRWLLERFRERLWLGIELHR 194

Query: 191  GYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
            G D   +  Q +  A    +P VA  +    +       D + A+ H   V++       
Sbjct: 195  GPDDALQLRQSLTQASRLGIPAVACGDVHMHARGRRALQDCMTAIRHHLPVAEAGCHLFP 254

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + +L++R E+  ++      L  T+ I++RC F L       P  +     D      
Sbjct: 255  NGERHLRSREELAQLYP--AALLSETLRISQRCHFQLDQLKYHYPHELVPPGHDTT---- 308

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR     G   R   G   K       R +++ EL +IA + +  YFL V D +++A+
Sbjct: 309  SWLRKLVEDGARWRWPDGIPEKA------RAQIEHELELIADLHYESYFLTVHDIVRFAR 362

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I +  GRGS A S   + L IT++DP+R  LLFERFL+ +R   PD D+DF  DRR+
Sbjct: 363  ERGI-LCQGRGSAANSSVCFVLGITELDPVRSKLLFERFLSRERNEPPDIDVDFEHDRRE 421

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YV  +YG  R A      S +A  ALRDV +AL +P  Q++ L         H   
Sbjct: 422  EVIQYVFQRYGRNRAALTAVASSYRATGALRDVAKALGLPPDQINALAGCCGRWSEH--- 478

Query: 489  LQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               I DDSR REA     +P + R+L ++  L G  RH S H  G VI ++PL  LVP+ 
Sbjct: 479  ---IPDDSRLREAGFDPDNPILRRVLVLTDALIGFPRHLSQHPGGFVISEQPLDTLVPIE 535

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +D  V Q++   ++  GL+K D L L  L+ +++  D +   RG +  ++ +P +D
Sbjct: 536  NASMADRTVIQWDKDDLDAVGLLKVDVLALGMLSAIRRCFDLIEHYRGTRWTIATLPAED 595

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
              TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  
Sbjct: 596  KPTYEMISRADTIGVFQIESRAQMAMLPRLRPKTFYDLVIQVAIVRPGPIQGDMVHPYLR 655

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+N +E++      + P+ + T GV ++QEQVM++A + + Y+  EAD LRRAM   K  
Sbjct: 656  RRNKEEEVDYPSEELKPVFERTLGVPLFQEQVMELAIVAAEYTPDEADKLRRAMAAWKRH 715

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              ++  + R        G        IFE +  F  YGF +SHAA++A+++Y + W+K H
Sbjct: 716  GSLEPHRVRLTERMLAKGYQPDFIARIFEQIKGFGSYGFPESHAASFALLTYASCWLKRH 775

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYY 837
             P  F  A +           +  QDAR+  ++I P  V     D  +         I  
Sbjct: 776  EPAAFACALINSWPMGFYNPDQILQDARRHRLEIRPVDVRHSGWDCSLEPSRQAQPAIRL 835

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  ++G     A+ I  A   +PF  + D C R +      R  E L  AGAL      
Sbjct: 836  GLRMVRGFREADAQRIEAARQRQPFTDIHDLCLRAEL---EPRAREQLADAGALRGLAGH 892

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R +   ++  I                 +FA         I L   SV        N+  
Sbjct: 893  RHRARWAVAGI------------EPQLPLFASLPAPEETSINLPLPSVGED---LFNDYA 937

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             LG     HPL + +  L+    +   E      G  + +A +V+ +Q+ +T  G  + +
Sbjct: 938  TLGTTLGPHPLLLLRDELKARRCRSSRELGTIEHGRPVSVAGLVIGRQRPQTASG--VIF 995

Query: 1018 VTFSEPAKEYEANFF 1032
            VT  +         +
Sbjct: 996  VTLEDEFGMVNVVVW 1010


>gi|327480947|gb|AEA84257.1| error-prone DNA polymerase [Pseudomonas stutzeri DSM 4166]
          Length = 1026

 Score =  851 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/1035 (27%), Positives = 459/1035 (44%), Gaps = 81/1035 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + ++       A+AITD  +L   +   Q +   G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFERAKRQGYDALAITDECSLAGIVRAWQASKDTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ I+                  P +VLLV    GYQ L +L++R     + K   +
Sbjct: 65   IGSEVQIEGG----------------PKLVLLVENLTGYQALCQLITRARRRAE-KGRYQ 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                 L E   EGL+ +           +       A+       + F +RL++ ++ HR
Sbjct: 108  ALREDLSEGSLEGLLAI-----------WLPGH-AGADTDGRWLLERFRERLWLGIELHR 155

Query: 191  GYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
            G D   +  Q +  A    +P VA  +    +       D + A+ H   V++       
Sbjct: 156  GPDDTLQLRQSLTQASRLGIPAVACGDVHMHARGRRALQDCMTAIRHHLPVAEAGCHLFP 215

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + +L++R E+  ++      L  T+ I++RC F L       P  +     D      
Sbjct: 216  NGERHLRSREELAQLYP--AALLSETLRISQRCHFQLDQLKYHYPHELVPPGHD----ST 269

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR     G   R   G   K       R +L+ EL +IA + +  YFL V D +++A+
Sbjct: 270  SWLRKLVEDGARWRWPDGIPEKA------RAQLEHELELIADLHYESYFLTVHDIVRFAR 323

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I +  GRGS A S   + L IT++DP+R  LLFERFL+ +R   PD D+DF  DRR+
Sbjct: 324  ERGI-LCQGRGSAANSSVCFVLGITELDPVRSKLLFERFLSRERNEPPDIDVDFEHDRRE 382

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YV  +YG  R A      S +A  ALRDV +AL +P  Q++ L         H   
Sbjct: 383  EVIQYVFQRYGRNRAALTAVASSYRATGALRDVAKALGLPPDQINALAGCCGRWSEH--- 439

Query: 489  LQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               I DDSR REA     +P + R+L ++  L G  RH S H  G VI ++PL  LVP+ 
Sbjct: 440  ---IPDDSRLREAGFDPDNPVLRRVLVLTDALIGFPRHLSQHPGGFVISEQPLDTLVPIE 496

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +D  V Q++   ++  GL+K D L L  L+ +++  D +   RG +  ++ +P +D
Sbjct: 497  NASMADRTVIQWDKDDLDAVGLLKVDVLALGMLSAIRRCFDLIEHYRGTRWTIATLPAED 556

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
              TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  
Sbjct: 557  KPTYEMISRADTIGVFQIESRAQMAMLPRLRPKTFYDLVIQVAIVRPGPIQGDMVHPYLR 616

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+N +E++      + P+ + T GV ++QEQVM++A + + Y+  EAD LRRAM   K  
Sbjct: 617  RRNKEEEVDYPSEELKPVFERTLGVPLFQEQVMELAIVAAEYTPDEADKLRRAMAAWKRH 676

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              ++  + R        G        IFE +  F  YGF +SHAA++A+++Y + W+K H
Sbjct: 677  GSLEPHRVRLTERMLAKGYQPDFIARIFEQIKGFGSYGFPESHAASFALLTYASCWLKRH 736

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYY 837
             P  F  A +           +  QDAR+  ++I P  V     D  +         I  
Sbjct: 737  EPAAFACALINSWPMGFYNPDQILQDARRHRLEIRPVDVRHSGWDCSLEPSRQAQPAIRL 796

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  ++G   T A+ I  A   +PF  + D C R +      R  E L  AGAL      
Sbjct: 797  GLRMVRGFRETDAQRIEAARQRQPFTDIHDLCLRAEL---EPRAREQLADAGALRGLAGH 853

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R +   ++  I                 +FA         I L   SV        N+  
Sbjct: 854  RHRARWAVAGI------------EPQLPLFASLPAPEETSINLPLPSVGED---LFNDYA 898

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             LG     HPL + +  L+    +   E      G  + +A +V+ +Q+ +T  G  + +
Sbjct: 899  TLGTTLGPHPLLLLRDELKARRCRSSRELGTIEHGRPVSVAGLVIGRQRPQTASG--VIF 956

Query: 1018 VTFSEPAKEYEANFF 1032
            VT  +         +
Sbjct: 957  VTLEDEFGMVNVVVW 971


>gi|300938591|ref|ZP_07153324.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           21-1]
 gi|300456473|gb|EFK19966.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           21-1]
          Length = 771

 Score =  851 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/788 (43%), Positives = 493/788 (62%), Gaps = 34/788 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINRRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFLAASM 792
            EF+AA M
Sbjct: 764 AEFMAAGM 771


>gi|300949784|ref|ZP_07163758.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           116-1]
 gi|300450816|gb|EFK14436.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           116-1]
          Length = 788

 Score =  851 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/786 (43%), Positives = 491/786 (62%), Gaps = 34/786 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFLAA 790
            EF+A 
Sbjct: 764 AEFMAG 769


>gi|315300688|gb|EFU59915.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           16-3]
          Length = 770

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/786 (43%), Positives = 492/786 (62%), Gaps = 34/786 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFLAA 790
            EF+AA
Sbjct: 764 AEFMAA 769


>gi|315285249|gb|EFU44694.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           110-3]
          Length = 772

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/786 (43%), Positives = 492/786 (62%), Gaps = 34/786 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKKGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFLAA 790
            EF+AA
Sbjct: 764 AEFMAA 769


>gi|300956067|ref|ZP_07168392.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           175-1]
 gi|300317097|gb|EFJ66881.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           175-1]
          Length = 773

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/786 (43%), Positives = 492/786 (62%), Gaps = 34/786 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKKGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFLAA 790
            EF+AA
Sbjct: 764 AEFMAA 769


>gi|161833722|ref|YP_001597918.1| putative DNA polymerase III subunit alpha (dnaE)/DNA polymerase III,
            epsilon subunit (dnaQ) fusion [Candidatus Sulcia muelleri
            GWSS]
 gi|152206212|gb|ABS30522.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase III,
            epsilon subunit (dnaQ) fusion [Candidatus Sulcia muelleri
            GWSS]
          Length = 1411

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/1060 (30%), Positives = 536/1060 (50%), Gaps = 69/1060 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------- 63
            + H+  H+S+S+L   + +N+++ K       A+ ITD  N+     F  +         
Sbjct: 236  YSHIHNHTSFSILSSTIDINSLIKKTIEYDMDAVGITDYGNMMGVFNFINRIKNINDNFL 295

Query: 64   -AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                I+PIIGC+L I   D +K T++       + + V       GY  L +L S  ++ 
Sbjct: 296  VKKKIKPIIGCELYISYNDLIKKTDK-------IYNQVFFAKNKNGYYNLSKLCSHGFID 348

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                    I  + L E     LI ++G  +  I           AEK    +  LFGD  
Sbjct: 349  GYYSGIPIIGKN-LVEKYKANLIAVSGDLNSEIPFTILNKGENEAEKVFKWWHNLFGDDF 407

Query: 183  YVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ + RH   +    +Q +++ +    +  +  NN+ +LS++DY AHD+L+ V +S   S
Sbjct: 408  YIEILRHGLKEEDHVNQILLKFSKKFNVKFIPQNNNFYLSQKDYHAHDILLCVKNSQKQS 467

Query: 242  QK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                            + Y KN+++M ++FSDLPEA +N  E+  +  F    +  +LP+
Sbjct: 468  TPIGKGRGFRFGFPNQEFYFKNKNQMYNLFSDLPEAFDNLKELIEKVEFYDITNKILLPK 527

Query: 295  FIEKECDDIQK-----EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
            F        +       E   LR     G + +         Y     ++++ FEL  I 
Sbjct: 528  FYIPNKWIKKYCIKNNYENEYLRYLTYKGAKKKYL-------YINDIIKKKISFELETIK 580

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            ++ + GYFLIV DFI  AK   + VGPGRGS AGSV AY L IT+IDP++++LLFERFLN
Sbjct: 581  KIGYPGYFLIVQDFICQAKNIGVEVGPGRGSVAGSVVAYCLGITNIDPIKYNLLFERFLN 640

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            PDR+S+PD DIDF    R+++I +V NKYG  +VAQIIT+G + AK+++RD  R L +P 
Sbjct: 641  PDRISLPDIDIDFDDKGREKIIEWVVNKYGKNKVAQIITYGKMGAKSSIRDTARVLNLPL 700

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV-------------DRLLEISQ 516
             + D + K++PN     +  + I    +   +   +  +              ++L+ + 
Sbjct: 701  LETDNIAKIVPNISLKEIIKKNIKYLKKKLNSEELENVIKLKKIFKEKKTLQSKILKQAM 760

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             +EG  R+   HA GI+I    + + +P+     S+L +TQF+   +E+ GL+K DFLGL
Sbjct: 761  VIEGSVRNTGIHACGIIITPSDIKKYIPVSTTKYSNLLLTQFDNDVVEQVGLLKMDFLGL 820

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            KTLT+++ +L  +      + L  +   D +TY L     T+ +FQ ES GM++ L  ++
Sbjct: 821  KTLTIIKDTLYLIK-----IPLYEVNLYDVKTYKLFKKGETVAVFQYESPGMQKYLRRLK 875

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            PD  +D+IA+ +LYRPGP+  I  +  RK+G EKI    P +   L+ET G+ +YQEQVM
Sbjct: 876  PDKFDDLIAMNALYRPGPMQYITNFIARKHGLEKISYDLPELQEFLEETYGITVYQEQVM 935

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
             I+Q +SG+S  +AD LR+A+GKK K+ +   K++FI G   NG SK I   I++    F
Sbjct: 936  LISQKISGFSKGDADFLRKAIGKKDKDVLINIKQKFIYGGINNGYSKNILEKIWKDWKSF 995

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A Y FNKSH+  Y+ I+++TA++K HYP E++A+ ++  M N++ I  F ++ ++  + +
Sbjct: 996  ASYAFNKSHSTCYSYIAFKTAYLKAHYPAEYMASVLSNNMQNLKNITFFIEECKRMGVIV 1055

Query: 817  MPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRVD 873
            + P +N     F V       + + AIKG+G  +   I++     ++ ++S+      VD
Sbjct: 1056 LGPDINESNYKFTVNKMGYIRFGMGAIKGIGKYSVNSIIKERKLINR-YNSIFCLIKNVD 1114

Query: 874  SKKLNRRVLESLVFAGALDCFGY--SRMQLL------QSLDNIQKYAQWVEKNRTNKHEN 925
             + +N++VLE+LV +GA D F     R Q          ++ I K+    +  + N   +
Sbjct: 1115 LRLVNKKVLENLVLSGAFDNFKKKIHRSQYFDEENGSNMIEKIIKFGVKYKNLKINMKNS 1174

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            +F++ K     +   +     N+    + E+ V+G Y + HPL+ Y    +       ++
Sbjct: 1175 LFSNVKDIEILEPKFKNCKKWNNIDLLKKEKEVIGMYLTSHPLNEYVYETKYFTNASLDD 1234

Query: 986  SVATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
                     G  I +  ++     + ++   +       +
Sbjct: 1235 INHNKEKILGKKINICGIISKSLHRISKNNKKYIIFLLED 1274


>gi|221215348|ref|ZP_03588313.1| error-prone DNA polymerase [Burkholderia multivorans CGD1]
 gi|221164780|gb|EED97261.1| error-prone DNA polymerase [Burkholderia multivorans CGD1]
          Length = 1049

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/1035 (28%), Positives = 480/1035 (46%), Gaps = 59/1035 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AAG+ 
Sbjct: 10   PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAAGLP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             II          + ++T    +P     ++       +GY  L ELVS   +  + K S
Sbjct: 70   LII--------GSHFRLTAADGSPAIAFSAL---AMNRDGYGNLCELVSLGRMRGK-KGS 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L++       +        I    F  + Q  + ++  F ++FGDR +V L  
Sbjct: 118  YRLAPRDLEQPDAPFTHLRGLPDCIAILSPDFPANEQRLDAQVEWFARVFGDRAWVALTL 177

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H R  D      V ++A  H +P+VAT+  L          DVL ++     VS+     
Sbjct: 178  HARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTSIRLGRPVSECGYEL 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  + +++     ALE TV +ARRC+F L       P  +     D+   
Sbjct: 238  APNAERHLRSRLRLANLYP--AGALEETVRVARRCTFSLDDLKYEYPDEVVPAGYDV--- 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR +   G + R   G         D + +++ EL +IA + +  YFL V D +Q+
Sbjct: 293  -ATYLREQTYIGAQRRFPAGI------PVDVQAQIEHELQLIAELNYEAYFLTVYDIVQF 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++N I +  GRGS A S   Y L +T++DP R S+LFERF++ +R   PD D+DF   R
Sbjct: 346  ARQNGI-LCQGRGSAANSAVCYCLGVTEVDPSRQSMLFERFMSKERNEPPDIDVDFEHQR 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++Y+  KYG +R A      + + ++ALR+ G+AL +  + VDR+ K      +  
Sbjct: 405  REEVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDPAIVDRVAKSHHWFDSRA 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              LQ  A+     EA    P   +    + +L G  RH S H+ G VI    L++LVP+ 
Sbjct: 465  DLLQRFAEAGLDPEA----PLNQQWAAFAAQLLGYPRHLSQHSGGFVISRGKLTRLVPVE 520

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                 D  + Q++   IE  G++K D L L  L++++++LD +  +RG   +L  IP +D
Sbjct: 521  NAAMEDRTIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISEKRGETFELQDIPSED 580

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
              TY +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGP+   +   Y  
Sbjct: 581  KATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQGGMVHPYLR 640

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+ G E +      ++  LK T GV I+QEQVMQ+A L +G+S  EAD LRRAM   K K
Sbjct: 641  RRQGLEPVTFPSDGMEKALKRTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKRK 700

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              ++   +R +SG  + G  +  A  IF  +  F +YGF +SHAA++A++ Y +AW++ H
Sbjct: 701  GGLEPYHDRLVSGMLERGYDREFAEAIFAQIKGFGEYGFPESHAASFALLVYSSAWLRRH 760

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI----YYS 838
             P  FLAA +  +        +  QDAR+  ++++P  VN    D  +            
Sbjct: 761  EPAVFLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSVIEGPTTSAPVRLG 820

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             + ++G+    A  I  A A +PF  + D   R    + + +VL              +R
Sbjct: 821  FSLLRGMRADVAGRIELARAVRPFVDVADLARRAQLDRHDLQVL--------------AR 866

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
               L+SL    + A            ++    +GT  D   +      +       + R 
Sbjct: 867  ANALRSLAGGNRRAALWLAAAAIPDRDLL---RGTERDD-AVPALPQASEGKEIVTDYRA 922

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +GF    HPL + +  L    ++  E+      G   R   +V  +Q+  T  G  + ++
Sbjct: 923  MGFTLGRHPLALLRDRLTLDRLQSAEQLATLRSGQLARACGLVTVRQRPGTANG--VLFM 980

Query: 1019 TFSEPAKEYEANFFP 1033
            T  +   +     +P
Sbjct: 981  TLEDETGQVNVILWP 995


>gi|301646507|ref|ZP_07246382.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           146-1]
 gi|301075293|gb|EFK90099.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           146-1]
          Length = 770

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/786 (43%), Positives = 492/786 (62%), Gaps = 34/786 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFLAA 790
            EF+AA
Sbjct: 764 AEFMAA 769


>gi|301025936|ref|ZP_07189420.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           69-1]
 gi|300395735|gb|EFJ79273.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           69-1]
          Length = 771

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/786 (43%), Positives = 492/786 (62%), Gaps = 34/786 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFLAA 790
            EF+AA
Sbjct: 764 AEFMAA 769


>gi|301028677|ref|ZP_07191898.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           196-1]
 gi|299878309|gb|EFI86520.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           196-1]
          Length = 771

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/786 (43%), Positives = 492/786 (62%), Gaps = 34/786 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKKGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFLAA 790
            EF+AA
Sbjct: 764 AEFMAA 769


>gi|304385057|ref|ZP_07367403.1| DNA-directed DNA polymerase III alpha subunit [Pediococcus
            acidilactici DSM 20284]
 gi|304329251|gb|EFL96471.1| DNA-directed DNA polymerase III alpha subunit [Pediococcus
            acidilactici DSM 20284]
          Length = 1127

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/1031 (29%), Positives = 523/1031 (50%), Gaps = 43/1031 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K  +FV L V SSYSLL     +  ++         A+A+TD N ++ A+EF Q      
Sbjct: 15   KMMAFVPLHVLSSYSLLTSPTKIAELVKTAKDRGYSAMALTDNNTMYGAIEFYQACLKND 74

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI+G  + +D                   ++VLL     GY  L+ + S         
Sbjct: 75   LKPIVGLTIWLD----------STRGIDNQFALVLLAKNINGYHNLLRISSAKMTE--IS 122

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  + L+    + L+++       ++       +  A+  +  +++   D   + L
Sbjct: 123  AKPTLTFNDLRAY-WKDLVVIVPPVRSEVNELLERGMANDAQALIEEYQQS-IDSPDLFL 180

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
              +          + Q+A    +  +   +  +L+EED+ A  VL  +    V+   +  
Sbjct: 181  GINGQQSHVMRQTLTQMAQKAGIGCLPLPSVEYLNEEDHFATQVLRDIDSGKVLQHPELL 240

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             +   +++LK  +E V  +  L +A  L     +    +  + + +P LP+F        
Sbjct: 241  AKGGGNNWLKPATEFVREYGQLGDAEMLTQLDRVVAGINLEIPIVSPRLPQFATPN---- 296

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            Q++    L       L              A+ Y+ RLD EL VI  M F+ YFLI+ D 
Sbjct: 297  QQDSFTYLTQLCQQALTQ-----VKENVPDAERYQARLDHELAVIKEMGFADYFLIIHDV 351

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +Q+A +  I  GPGRGS AGS+ AY L IT +DPL++ LLFERFLNP+R  MPD D+D  
Sbjct: 352  VQFAHQKQILTGPGRGSAAGSLVAYLLKITSVDPLQYGLLFERFLNPERAQMPDIDLDIP 411

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+R+ V++YV ++YGH+ V QIITFG+L AK A+RDV R      ++++++  LIPN  
Sbjct: 412  DDQREVVLQYVHDRYGHQHVGQIITFGTLAAKQAIRDVARVFGEMPNKINQISALIPNKL 471

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  QA     R R+   + P    + E + +LEGL RH STHAAGIV+    L + V
Sbjct: 472  NITLK-QAAQTSHRLRDFIESSPKNRFMFETACRLEGLPRHFSTHAAGIVLSQDELVESV 530

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+  D    + ++Q++  ++E+ GL+K DFLGL+ L+L+   L+ + +   + ++  I  
Sbjct: 531  PVQ-DGNEGMLMSQYSKNFVEQVGLLKMDFLGLRNLSLMNNILELVHRTEPQFEIEKIEL 589

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D +T  L     T G+FQ ES+G+R  L  + P     ++A+ +LYRPGP++NI  +  
Sbjct: 590  NDPQTLQLFQRGDTSGVFQFESTGIRNVLRKVHPTNFGLVVAVNALYRPGPMENIDRFVK 649

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+  E     + +++ +L ET G+++YQEQVM++A  + G SL +AD+LRRAM KK   
Sbjct: 650  RKDHLEPYRFPNQILERVLGETYGILVYQEQVMEVASAMGGLSLGQADLLRRAMSKKKHA 709

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +++ +  FI GA + G S+ IA  ++  +  FA+YGFNKSHA AY+ +++Q A++K HY
Sbjct: 710  VIEQMRTNFIQGAVQKGYSEKIAQQVYRYIENFANYGFNKSHAVAYSKLAFQLAYLKAHY 769

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P +F  A +   + N  K K + Q+ ++  I  + P +N     +   + +I     AIK
Sbjct: 770  PGDFYTALLNSVVGNDTKTKTYIQELKRLGIPTLAPDINQSSATYTYQNGQIRMGFTAIK 829

Query: 844  GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            G+     +H++        F +++D+  R+ ++ ++  V++ L+FAGALD FGY+R +L 
Sbjct: 830  GLRRDFIQHLLAERERGGQFKTVDDWLRRMGNQGIDEDVIDKLIFAGALDSFGYNRAELD 889

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            + L  + K   +  +N      ++F     T   +  L          + + E+ +LG Y
Sbjct: 890  EYLPELLKGITFSGQN-----VDLFQKLMPTIKSRPDLP------LDEKLDREEELLGTY 938

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             S HP++ +  ++++      ++  A   G  +     + S +  +T+KG  + +   S+
Sbjct: 939  VSAHPVERFAELIKQRRFVPIQQFKA---GEKVTSIVYIRSFRSIRTKKGEPMAFAKISD 995

Query: 1023 PAKEYEANFFP 1033
               E EA  FP
Sbjct: 996  QTDECEAVIFP 1006


>gi|256847144|ref|ZP_05552590.1| DNA polymerase III [Lactobacillus coleohominis 101-4-CHN]
 gi|256715808|gb|EEU30783.1| DNA polymerase III [Lactobacillus coleohominis 101-4-CHN]
          Length = 1114

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/1039 (32%), Positives = 542/1039 (52%), Gaps = 63/1039 (6%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + +  +P    L V S+YSLL+  +   +++         AIA+TD N L+ A++F   A
Sbjct: 2    RKMSVTP----LDVTSTYSLLQSTIRPRDLVKAAREQGYSAIALTDENVLYGAVDFYNAA 57

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              AGI+PIIG +L +   +                ++ ++    +GY  L++L ++    
Sbjct: 58   QQAGIRPIIGLKLQLTFAE----------LDERKTTVTVIEKNQQGYTELMQLSTQQMTS 107

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                    + +  + +      I++    +         +     +K L  F    GD  
Sbjct: 108  -----KAELTVQDVVKQIDNCAIIIKPTMA-----ILTAHRDPTIQKLLSWFGNQPGDIF 157

Query: 183  Y-VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
              +NL      D      +  L+  + L L+A     +L    Y    VL A+     + 
Sbjct: 158  MGINLV----LDPTERQVLKDLSLQNGLKLIADEPVEYLEANQYFPTQVLRAIGDGRQIE 213

Query: 242  QK-DRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                    T  HYL+N   +   +    L +A+EN   + ++ SF +    P+LP F   
Sbjct: 214  SPLSTAHNTGQHYLRNAQNLTVAYERAGLADAVENNEVLVQKSSFKINFQKPVLPEFAVP 273

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E           LR   + GL+ R     +A     + YR RL+ EL VI +M F  YFL
Sbjct: 274  EG----VNTAQYLRQLCIIGLKKRH----LAPNTTIKQYRDRLERELTVIHQMGFDDYFL 325

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV D + +A +  I  GPGRGS AGS+ AYAL ITD+DPL + LLFERFLNP+R  MPD 
Sbjct: 326  IVWDIMAFAHRKQITTGPGRGSAAGSLVAYALAITDVDPLEYGLLFERFLNPERAQMPDI 385

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+D   +RR EV+ YV  +YGHERVAQIITFG+L A+  +RDVGR   +P  QV+++   
Sbjct: 386  DLDIPDNRRQEVLEYVHQRYGHERVAQIITFGTLAARQVVRDVGRVFGVPKYQVEQIIDT 445

Query: 479  IPNDPAHP--VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +     H      +AI      R     DP    ++E+++KLEGL RH STHAAG+V+  
Sbjct: 446  LRVLSRHRSVTLAEAIQQSQPLRNLMTDDPINKLVIEVARKLEGLPRHYSTHAAGVVLSA 505

Query: 537  RPLSQLVPMYRDVRS-DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
             PL ++VP+        L +TQF  + +E  GL+K DFLGL+ L+++ ++L  + Q    
Sbjct: 506  TPLKEIVPLQPGNDEAGLLMTQFPKEIVESVGLLKMDFLGLRNLSIMDRALAIIHQTTPG 565

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             D++ +P +DH+T  L     T GIFQ ES+G+RQ L+ + PD  EDI+A+ +LYRPGP+
Sbjct: 566  FDITKVPLNDHKTIQLFKQGLTDGIFQFESTGIRQTLQQLAPDNFEDIVAVNALYRPGPM 625

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             NI  +  RK+G+E I      + P+L  T G+++YQEQVMQ+A  ++G+SL +AD+LRR
Sbjct: 626  QNIPHFIARKHGQEPIQLPDQSLQPILGPTYGILVYQEQVMQVASKMAGFSLGQADLLRR 685

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AM KK +  M+  ++RFISGA KNG ++ IA  +F  + +FA+YGFN+SHA AY+ ++Y+
Sbjct: 686  AMSKKKQATMESMRQRFISGAVKNGYNQPIAEQVFNYIDQFANYGFNRSHAVAYSKMAYE 745

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
             A++K H+   F  A + +E  N++K++    DA++F ++I+ P++N   +++ + + +I
Sbjct: 746  MAYLKCHFTTAFFTALLAIEP-NMDKVRLHLADAQRFGVRIIGPNINQSQMEYSLQNGQI 804

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                + IKG+     + I+E      F +L DF  R+  K     ++E L++AGA D  G
Sbjct: 805  VMGFSMIKGMRRDFIQAIIEERKAGQFKNLPDFVQRLGEKWQKAALIEPLIYAGAFDQLG 864

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
            Y+R ++++ L  +                N F+ +      +  +++      + R + E
Sbjct: 865  YNRAEMIEGLSGVFA-------------GNEFSFQSADL--QPIMKRRQEYPLTYRLQKE 909

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSR 1014
            Q  LG Y SGHP+  Y+ + ++   +   +      G++++L  ++   +Q  T+K    
Sbjct: 910  QEYLGMYLSGHPVTQYQRVRQQQHTQRIMDLKP---GSSVKLLVLLNQIRQINTKKTHQP 966

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + + T S+     +   FP
Sbjct: 967  MAFATASDETGSMDITIFP 985


>gi|161378129|ref|NP_745263.2| error-prone DNA polymerase [Pseudomonas putida KT2440]
          Length = 1026

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/1039 (27%), Positives = 461/1039 (44%), Gaps = 82/1039 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P +  L   S++S   GA S + +  +       A+AITD   L   +   Q A    
Sbjct: 2    NTPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVHQ 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ I+G                 +      P +VLLV    GYQ L  L++R     + K
Sbjct: 62   LRLIVGS----------------EVQLCDGPKLVLLVENLTGYQNLCALITRARRRAE-K 104

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             + ++    L       L +     SG                     + +F +RL++ +
Sbjct: 105  GAYQLFRDDLLLHHQGLLALWVAADSGDTATG-------------AWLRSVFAERLWLAV 151

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              HRG D   R  ++  LA    +  VA  +            D + A+     VS+  R
Sbjct: 152  HLHRGSDDAVRLQRLRALAADVGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVSEAGR 211

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  + +L++++++  ++    + L  T+ IARRC F L       PR +  E     
Sbjct: 212  FLFANGERHLRSQAQLAELYP--LDLLAETLVIARRCQFDLSELNYQYPRELVPEG---- 265

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR     G+ +R   G   K       R  L  EL +I  + +  YFL V D +
Sbjct: 266  HTPASWLRELCEQGMPLRWPDGPSGK------VRDVLAKELGLIEELGYESYFLTVHDIV 319

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+   I +  GRGS A SV  + L IT++DP++  LLFERFL+ +R   PD D+DF  
Sbjct: 320  AFARSQRI-LCQGRGSAANSVVCFVLGITELDPMKHHLLFERFLSRERNEPPDIDVDFEH 378

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVI+YV  +YG  R A      +  A  A+RDV RAL +P  QVD L K       
Sbjct: 379  DRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARALGLPADQVDALAKCCGRWSD 438

Query: 485  HPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                   I DD R  EA      PS+ R+L ++ +L G  RH S H  G VI  +PL QL
Sbjct: 439  R------IPDDQRLAEAGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQPLDQL 492

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            VP+      +  V Q++   ++  GL+K D L L  L+ L++  D L   RG  + L+ I
Sbjct: 493  VPVENAAMPERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDQLQHHRGRHLTLATI 552

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D + 
Sbjct: 553  PSEDPATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAIVRPGPIQGDMVH 612

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+  +E +    P +  + + T GV ++QEQVM++A + + Y+  EAD LRR+M  
Sbjct: 613  PYLRRRLKQEPVTYPSPQLKEVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRRSMAA 672

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    ++  +ER + G  +NG +   A  IFE +  F  YGF +SHAA++A++ Y ++W
Sbjct: 673  WKRHGGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHAASFALLCYASSW 732

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI--- 835
            +K H P  F  A +           +  Q+AR+  I++ P  V     D  +  +     
Sbjct: 733  LKCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPDAEGTL 792

Query: 836  --YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
                 L  ++G+    A+ + +A + +P+ ++ED C R     L+ R    L   GAL  
Sbjct: 793  AIRMGLRLVRGLAEADAKRVQQARSQRPWRNVEDLCLRA---GLDARARARLADGGALRA 849

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R Q    +                    +FA  +    + + L    V        
Sbjct: 850  LASDRHQARWQV------------AAVQPQLPLFADVQALPEEPVQLP---VPTVGEDLM 894

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             + + LG     HPL + +  LR +G +   E      G+NI +A +VV +Q+ +T  G 
Sbjct: 895  ADYQTLGTTLGPHPLALLRARLRALGCRSSSELQGVEHGDNIAVAGLVVGRQRPQTASG- 953

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + +VT  +         +
Sbjct: 954  -VTFVTLEDEHGMVNVVVW 971


>gi|71151833|sp|Q88I82|DNAE2_PSEPK RecName: Full=Error-prone DNA polymerase
 gi|24984742|gb|AAN68727.1|AE016504_10 DNA polymerase III, alpha subunit, putative [Pseudomonas putida
            KT2440]
          Length = 1033

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/1039 (27%), Positives = 461/1039 (44%), Gaps = 82/1039 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P +  L   S++S   GA S + +  +       A+AITD   L   +   Q A    
Sbjct: 9    NTPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVHQ 68

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ I+G                 +      P +VLLV    GYQ L  L++R     + K
Sbjct: 69   LRLIVGS----------------EVQLCDGPKLVLLVENLTGYQNLCALITRARRRAE-K 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             + ++    L       L +     SG                     + +F +RL++ +
Sbjct: 112  GAYQLFRDDLLLHHQGLLALWVAADSGDTATG-------------AWLRSVFAERLWLAV 158

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              HRG D   R  ++  LA    +  VA  +            D + A+     VS+  R
Sbjct: 159  HLHRGSDDAVRLQRLRALAADVGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVSEAGR 218

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  + +L++++++  ++    + L  T+ IARRC F L       PR +  E     
Sbjct: 219  FLFANGERHLRSQAQLAELYP--LDLLAETLVIARRCQFDLSELNYQYPRELVPEG---- 272

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR     G+ +R   G   K       R  L  EL +I  + +  YFL V D +
Sbjct: 273  HTPASWLRELCEQGMPLRWPDGPSGK------VRDVLAKELGLIEELGYESYFLTVHDIV 326

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+   I +  GRGS A SV  + L IT++DP++  LLFERFL+ +R   PD D+DF  
Sbjct: 327  AFARSQRI-LCQGRGSAANSVVCFVLGITELDPMKHHLLFERFLSRERNEPPDIDVDFEH 385

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVI+YV  +YG  R A      +  A  A+RDV RAL +P  QVD L K       
Sbjct: 386  DRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARALGLPADQVDALAKCCGRWSD 445

Query: 485  HPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                   I DD R  EA      PS+ R+L ++ +L G  RH S H  G VI  +PL QL
Sbjct: 446  R------IPDDQRLAEAGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQPLDQL 499

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            VP+      +  V Q++   ++  GL+K D L L  L+ L++  D L   RG  + L+ I
Sbjct: 500  VPVENAAMPERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDQLQHHRGRHLTLATI 559

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D + 
Sbjct: 560  PSEDPATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAIVRPGPIQGDMVH 619

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+  +E +    P +  + + T GV ++QEQVM++A + + Y+  EAD LRR+M  
Sbjct: 620  PYLRRRLKQEPVTYPSPQLKEVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRRSMAA 679

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    ++  +ER + G  +NG +   A  IFE +  F  YGF +SHAA++A++ Y ++W
Sbjct: 680  WKRHGGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHAASFALLCYASSW 739

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI--- 835
            +K H P  F  A +           +  Q+AR+  I++ P  V     D  +  +     
Sbjct: 740  LKCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPDAEGTL 799

Query: 836  --YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
                 L  ++G+    A+ + +A + +P+ ++ED C R     L+ R    L   GAL  
Sbjct: 800  AIRMGLRLVRGLAEADAKRVQQARSQRPWRNVEDLCLRA---GLDARARARLADGGALRA 856

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R Q    +                    +FA  +    + + L    V        
Sbjct: 857  LASDRHQARWQV------------AAVQPQLPLFADVQALPEEPVQLP---VPTVGEDLM 901

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             + + LG     HPL + +  LR +G +   E      G+NI +A +VV +Q+ +T  G 
Sbjct: 902  ADYQTLGTTLGPHPLALLRARLRALGCRSSSELQGVEHGDNIAVAGLVVGRQRPQTASG- 960

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + +VT  +         +
Sbjct: 961  -VTFVTLEDEHGMVNVVVW 978


>gi|307730066|ref|YP_003907290.1| DNA polymerase III subunit alpha [Burkholderia sp. CCGE1003]
 gi|307584601|gb|ADN57999.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1003]
          Length = 1049

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/1045 (26%), Positives = 460/1045 (44%), Gaps = 62/1045 (5%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +       P++  L   S++S L GA     +  + A     A+AITD  +L   +    
Sbjct: 1    MDTTFSMLPAYAELFCLSNFSFLRGASHAEELAGRAAQLGYSALAITDECSLAGVVRAHV 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  A +  I+            ++ N   +P      ++LL     GY  L EL++   
Sbjct: 61   AAKEAKLPFIV--------GSYFRLVNADGSP---AFGLILLAKNRNGYGNLSELITLAR 109

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 K   R+    L     +   +L       I    F    +V + +L    + F  
Sbjct: 110  TR-APKGEYRLTPQDLSRPDRDYRHLLGVPDCLAILVPNFPAKEEVLDAQLEWLDETFPG 168

Query: 181  RLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R +V L  H R  D      V  +A   ++P+VA    L          D L A+     
Sbjct: 169  RAWVGLVLHQRAMDDIHRGAVEFIARNRDVPVVALGEVLMHVRSRKPLQDTLTAIRVGKP 228

Query: 240  VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            V +         + +L++R  + +++S  PEAL  TV+IA RC+F L       P  +  
Sbjct: 229  VHECGYDLAPNAEQHLRSRLRLANLYS--PEALAATVDIAARCTFSLDELRYEYPDELVP 286

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                        LR +   G + R   G           +++++ EL +IA +++  YFL
Sbjct: 287  SGF----TPAAYLRQETYIGAQRRFPSGI------PLQVQEQIEHELELIAELQYEPYFL 336

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
             V D +++A+  +I +  GRGS A S   Y L +T++DP R ++LFERF++ +R   PD 
Sbjct: 337  TVYDLVRFARSQHI-LCQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEPPDI 395

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF   RR+EVI+Y+  KYG +R A      + +A+  LR+ G+AL +    VD + K 
Sbjct: 396  DVDFEHQRREEVIQYIYRKYGRDRAAIAAAVSTYRARGVLRETGKALGVDLQIVDAVAKS 455

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                      L+   +           P +     ++ +L G  RH S H+ G VI    
Sbjct: 456  HHWFDNSADLLKRFEECG----LNPQTPLIRAWATLAAQLYGFPRHLSQHSGGFVISRGK 511

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD 597
            L++LVP+      +  V Q++   +E  GL+K D L L  L+ ++++L+ +  QRG + +
Sbjct: 512  LTRLVPVENAAMPERSVIQWDKDDLESLGLLKVDVLALGMLSAIRRTLELVSEQRGERFE 571

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP +D  TY ++    T+G+FQ+ES      L  M+P    D++  V++ RPGPI  
Sbjct: 572  MQDIPAEDEATYDMICAADTVGVFQIESRAQMSMLPRMRPRVFYDLVIEVAIVRPGPIQG 631

Query: 658  I--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
                 Y  R+ G E +      ++  L  T GV I+QEQVMQ+A L +G++  EAD LRR
Sbjct: 632  GAVHPYLRRRQGFEPVTYPSAALETALGRTLGVPIFQEQVMQVAILAAGFTAGEADQLRR 691

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AM   K K  + K  +R + G  + G     A  IFE +  F +YGF +SHAA++A++ Y
Sbjct: 692  AMAAWKRKGGLGKYYDRIVLGMQERGYDLAFAEAIFEQIKGFGEYGFPESHAASFALLVY 751

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---- 830
             ++W+K H P  FLAA +  +        +  QDA++  ++++P  V+    +  +    
Sbjct: 752  TSSWLKCHEPEAFLAAMLNSQPMGFYSSSQLVQDAQRHGVKVLPVDVSVSGWNSSLERRA 811

Query: 831  --GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  +   L+ ++G+   TA  I  A A +PF S++D   R     L+RR L  L  A
Sbjct: 812  GGERPAVRLGLSLLRGMKEGTAGRIENARAVRPFASVKDLARRA---ALDRRDLHILADA 868

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
             AL     +R + L             +       +++ A       +   L   S  + 
Sbjct: 869  NALASLAGNRREALW------------QSAAAVPEKDMLA-AAAVEDETPELGAPSEAHD 915

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             V    + R LG     HPL++ +P L    +           G   R   +V  +Q+  
Sbjct: 916  IV---ADYRSLGLTLGRHPLELLRPQLLANRLMPASTLRTYRDGRLARGCGLVTVRQRPG 972

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T KG  + +VT  +         +P
Sbjct: 973  TAKG--VIFVTIEDETGNVNVIIWP 995


>gi|257415661|ref|ZP_05592655.1| DNA polymerase III alpha subunit [Enterococcus faecalis AR01/DG]
 gi|257157489|gb|EEU87449.1| DNA polymerase III alpha subunit [Enterococcus faecalis ARO1/DG]
 gi|315147993|gb|EFT92009.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX4244]
          Length = 1109

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/1034 (31%), Positives = 516/1034 (49%), Gaps = 60/1034 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +    +            ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEKEGHSE-----------LLLFAKNLKGYQQLMQLSSSKMTTEGPFYLA 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
                S L +     L  +T  + G + +  FF   Q A          F  + L+V    
Sbjct: 111  E-HQSLLSD-----LFAVTLSAKGEVAQ-TFFEDEQQAVHAFQQLASYFDPQSLFVEHSF 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKD 244
                ++ R   +       +LP VA      L+ E+  A  VL ++  +          +
Sbjct: 164  --SMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQTPE 221

Query: 245  RPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               +      +    +M+ I     E ++NT+++A  C   + +H  +LP F   +    
Sbjct: 222  IEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDN--- 276

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +   + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D 
Sbjct: 277  -QTAGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDV 328

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D  
Sbjct: 329  MDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIP 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN  
Sbjct: 389  DNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKL 448

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LV
Sbjct: 449  KITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLV 507

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+      ++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP
Sbjct: 508  PLQPGSN-EILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLNQIP 566

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+ 
Sbjct: 567  LDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFI 626

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K
Sbjct: 627  RRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKK 686

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + +D+++  F++GA + G  K  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K H
Sbjct: 687  DVLDEERNHFVNGALQQGYPKETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVH 746

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
            YP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  ++
Sbjct: 747  YPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSS 806

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R Q
Sbjct: 807  LKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQ 866

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L   L++  +         +    ++    K    +              ++      LG
Sbjct: 867  LAVGLESNIQSILL-----SGGSMDLLETLKPKEEEIADYPLEERLEQEEQY------LG 915

Query: 961  FYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y SGHP + +K   L K      +     +     +L   V + +  +T+KG ++ +V 
Sbjct: 916  VYLSGHPTEEFKKTRLAKQT----QLVHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVD 971

Query: 1020 FSEPAKEYEANFFP 1033
              +         FP
Sbjct: 972  GDDTTGSISLTLFP 985


>gi|161506601|ref|YP_001573722.1| DNA polymerase III, alpha subunit [Burkholderia multivorans ATCC
            17616]
 gi|189348876|ref|YP_001942071.1| DNA polymerase [Burkholderia multivorans ATCC 17616]
 gi|160346839|gb|ABX19922.1| DNA polymerase III, alpha subunit [Burkholderia multivorans ATCC
            17616]
 gi|189339014|dbj|BAG48081.1| DNA polymerase [Burkholderia multivorans ATCC 17616]
          Length = 1049

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/1035 (28%), Positives = 479/1035 (46%), Gaps = 59/1035 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AAG+ 
Sbjct: 10   PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAAGLP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             II          + ++T     P     ++       +GY  L ELVS   +  + K S
Sbjct: 70   LII--------GSHFRLTAADGAPAIAFSAL---AMNRDGYGNLCELVSLGRMRGK-KGS 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L++       +        I    F  + Q  + ++  F ++FGDR +V L  
Sbjct: 118  YRLAPRDLEQPDAPFTHLRGLPDCIAILSPDFPANEQRLDAQVEWFARVFGDRAWVALTL 177

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H R  D      V ++A  H +P+VAT+  L          DVL ++     VS+     
Sbjct: 178  HARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTSIRLGRPVSECGYEL 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  + +++     ALE TV +ARRC+F L       P  +     D+   
Sbjct: 238  APNAERHLRSRLRLANLYP--AGALEETVRVARRCTFSLDDLKYEYPDEVVPAGYDV--- 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR +   G + R   G         D + +++ EL +IA + +  YFL V D +Q+
Sbjct: 293  -ATYLREQTYIGAQRRFPAGI------PVDVQAQIEHELQLIAELNYEAYFLTVYDIVQF 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++N I +  GRGS A S   Y L +T++DP R S+LFERF++ +R   PD D+DF   R
Sbjct: 346  ARQNGI-LCQGRGSAANSAVCYCLGMTEVDPSRQSMLFERFMSKERNEPPDIDVDFEHQR 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++Y+  KYG +R A      + + ++ALR+ G+AL +  + VDR+ K      +  
Sbjct: 405  REEVMQYIYRKYGRDRAALTAAVSTYRPRSALREAGKALGVDPAIVDRVAKSHHWFDSRA 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              LQ  A+     EA    P   +    + +L G  RH S H+ G VI    L++LVP+ 
Sbjct: 465  DLLQRFAEAGLDPEA----PLNQQWAAFAAQLLGYPRHLSQHSGGFVISRGKLTRLVPVE 520

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                 D  + Q++   IE  G++K D L L  L++++++LD +  +RG   +L  IP +D
Sbjct: 521  NAAMEDRTIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISEKRGETFELQDIPAED 580

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
              TY +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGP+   +   Y  
Sbjct: 581  KATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQGGMVHPYLR 640

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+ G E +      ++  LK T GV I+QEQVMQ+A L +G+S  EAD LRRAM   K K
Sbjct: 641  RRQGLEPVTFPSDGMEKALKRTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKRK 700

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              ++   +R +SG  + G  +  A  IF  +  F +YGF +SHAA++A++ Y +AW++ H
Sbjct: 701  GGLEPYHDRLVSGMLERGYDREFAEAIFAQIKGFGEYGFPESHAASFALLVYSSAWLRRH 760

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI----YYS 838
             P  FLA+ +  +        +  QDAR+  ++++P  VN    D  +            
Sbjct: 761  EPAVFLASLLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSVIEGPTTSAPVRLG 820

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             + ++G+    A  I  A A +PF  + D   R    + + +VL              +R
Sbjct: 821  FSLLRGMRADVAGRIELARAVRPFVDVADLARRAQLDRHDLQVL--------------AR 866

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
               L+SL    + A            ++    +GT  D   +      +       + R 
Sbjct: 867  ANALRSLAGGNRRAALWLAAAAIPDRDLL---RGTERDD-AVPALPQASEGKEIVTDYRA 922

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +GF    HPL + +  L    ++  E+      G   R   +V  +Q+  T  G  + ++
Sbjct: 923  MGFTLGRHPLALLRDRLTLDRLQSAEQLATLRSGQLARACGLVTVRQRPGTANG--VLFM 980

Query: 1019 TFSEPAKEYEANFFP 1033
            T  +   +     +P
Sbjct: 981  TLEDETGQVNVILWP 995


>gi|227517968|ref|ZP_03948017.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0104]
 gi|227074586|gb|EEI12549.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0104]
          Length = 1109

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1034 (31%), Positives = 517/1034 (50%), Gaps = 60/1034 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +    +            ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEKEGHSE-----------LLLFAKNLKGYQQLMQLSSSKMTTEGPFYLA 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
                S L +     L  +T  + G + +  FF   Q A          F  + L+V    
Sbjct: 111  E-HQSLLSD-----LFAVTLSAKGEVAQ-TFFEDEQQAVHAFQQLASYFDPQSLFVEHSF 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKD 244
                ++ R   +       +LP VA      L+ E+  A  VL ++  +          +
Sbjct: 164  --SMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQTPE 221

Query: 245  RPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               +      +    +M+ I     E ++NT+++A  C   + +H  +LP F   +    
Sbjct: 222  IEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDN--- 276

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +   + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D 
Sbjct: 277  -QTAGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDV 328

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D  
Sbjct: 329  MDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIP 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN  
Sbjct: 389  DNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKL 448

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LV
Sbjct: 449  KITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLV 507

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+      ++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP
Sbjct: 508  PLQLGSN-EILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAIKRVYNQTIHLNQIP 566

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+ 
Sbjct: 567  LDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFI 626

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K
Sbjct: 627  RRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKK 686

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K H
Sbjct: 687  DVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVH 746

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
            YP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  ++
Sbjct: 747  YPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSS 806

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R Q
Sbjct: 807  LKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQ 866

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L   L++  +         +    ++    K    +              ++      LG
Sbjct: 867  LAVGLESNIQSILL-----SGGSMDLLETLKPKEEEIADYPLEERLEQEEQY------LG 915

Query: 961  FYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y SGHP + +K   L K      +     +   + +L   V + +  +T+KG ++ +V 
Sbjct: 916  VYLSGHPTEEFKKTRLAKQT----QLVHELVENQSTKLLIYVKNIRTIRTKKGEQMAFVD 971

Query: 1020 FSEPAKEYEANFFP 1033
              +         FP
Sbjct: 972  GDDTTGSISLTLFP 985


>gi|300860057|ref|ZP_07106145.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TUSoD Ef11]
 gi|300850875|gb|EFK78624.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TUSoD Ef11]
 gi|315144680|gb|EFT88696.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX2141]
 gi|315160663|gb|EFU04680.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0645]
          Length = 1109

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/1034 (31%), Positives = 516/1034 (49%), Gaps = 60/1034 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +    +            ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEKEGHSE-----------LLLFAKNLKGYQQLMQLSSSKMTTEGPFYLA 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
                S L +     L  +T  + G + +  FF   Q A          F  + L+V    
Sbjct: 111  E-HQSLLSD-----LFAVTLSAKGEVAQ-TFFEDEQQAVHAFQQLASYFDPQSLFVEHSF 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKD 244
                ++ R   +       +LP VA      L+ E+  A  VL ++  +          +
Sbjct: 164  --SMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQTPE 221

Query: 245  RPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               +      +    +M+ I     E ++NT+++A  C   + +H  +LP F   +    
Sbjct: 222  IEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDN--- 276

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +   + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D 
Sbjct: 277  -QTAGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDV 328

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D  
Sbjct: 329  MDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIP 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN  
Sbjct: 389  DNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKL 448

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LV
Sbjct: 449  KITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLV 507

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+      ++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP
Sbjct: 508  PLQLGSN-EILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIP 566

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+ 
Sbjct: 567  LDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFI 626

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K
Sbjct: 627  RRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKK 686

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + +D+++  F++GA + G  K  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K H
Sbjct: 687  DVLDEERNHFVNGALQQGYPKETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVH 746

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
            YP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  ++
Sbjct: 747  YPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSS 806

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R Q
Sbjct: 807  LKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQ 866

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L   L++  +         +    ++    K    +              ++      LG
Sbjct: 867  LAVGLESNIQSILL-----SGGSMDLLETLKPKEEEIADYPLEERLEQEEQY------LG 915

Query: 961  FYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y SGHP + +K   L K      +     +     +L   V + +  +T+KG ++ +V 
Sbjct: 916  VYLSGHPTEEFKKTRLAKQT----QLVHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVD 971

Query: 1020 FSEPAKEYEANFFP 1033
              +         FP
Sbjct: 972  GDDTTGSISLTLFP 985


>gi|29375623|ref|NP_814777.1| DNA polymerase III, alpha subunit [Enterococcus faecalis V583]
 gi|227555152|ref|ZP_03985199.1| DNA polymerase III, alpha subunit [Enterococcus faecalis HH22]
 gi|257418632|ref|ZP_05595626.1| DNA polymerase III alpha subunit [Enterococcus faecalis T11]
 gi|29343084|gb|AAO80847.1| DNA polymerase III, alpha subunit [Enterococcus faecalis V583]
 gi|227175736|gb|EEI56708.1| DNA polymerase III, alpha subunit [Enterococcus faecalis HH22]
 gi|257160460|gb|EEU90420.1| DNA polymerase III alpha subunit [Enterococcus faecalis T11]
 gi|315574296|gb|EFU86487.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0309B]
 gi|315581632|gb|EFU93823.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0309A]
 gi|327534630|gb|AEA93464.1| DNA-directed DNA polymerase III alpha subunit [Enterococcus faecalis
            OG1RF]
          Length = 1109

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1034 (31%), Positives = 516/1034 (49%), Gaps = 60/1034 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +    +            ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEKEGHSE-----------LLLFAKNLKGYQQLMQLSSSKMTTEGPFYLA 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
                S L +     L  +T  + G + +  FF   Q A          F  + L+V    
Sbjct: 111  E-HQSLLSD-----LFAVTLSAKGEVAQ-TFFEDEQQAVHAFQQLASYFDPQSLFVEHSF 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKD 244
                ++ R   +       +LP VA      L+ E+  A  VL ++  +          +
Sbjct: 164  --SMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQTPE 221

Query: 245  RPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               +      +    +M+ I     E ++NT+++A  C   + +H  +LP F   +    
Sbjct: 222  IEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDN--- 276

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +   + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D 
Sbjct: 277  -QTAGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDV 328

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D  
Sbjct: 329  MDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIP 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN  
Sbjct: 389  DNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKL 448

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LV
Sbjct: 449  KITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLV 507

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+      ++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP
Sbjct: 508  PLQPGSN-EILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLNQIP 566

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+ 
Sbjct: 567  LDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFI 626

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K
Sbjct: 627  RRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKK 686

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K H
Sbjct: 687  DVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVH 746

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
            YP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  ++
Sbjct: 747  YPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSS 806

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R Q
Sbjct: 807  LKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQ 866

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L   L++  +         +    ++    K    +              ++      LG
Sbjct: 867  LAVGLESNIQSILL-----SGGSMDLLETLKPKEEEIADYPLEERLEQEEQY------LG 915

Query: 961  FYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y SGHP + +K   L K      +     +     +L   V + +  +T+KG ++ +V 
Sbjct: 916  VYLSGHPTEEFKKTRLAKQT----QLVHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVD 971

Query: 1020 FSEPAKEYEANFFP 1033
              +         FP
Sbjct: 972  GDDTTGSISLTLFP 985


>gi|270291308|ref|ZP_06197530.1| DNA polymerase III subunit alpha [Pediococcus acidilactici 7_4]
 gi|270280154|gb|EFA25990.1| DNA polymerase III subunit alpha [Pediococcus acidilactici 7_4]
          Length = 1112

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/1028 (29%), Positives = 522/1028 (50%), Gaps = 43/1028 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L V SSYSLL     +  ++         A+A+TD N ++ A+EF Q      ++P
Sbjct: 3    AFVPLHVLSSYSLLTSPTKIAELVKTAKDRGYSAMALTDNNTMYGAIEFYQACLKNDLKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G  + +D                   ++VLL     GY  L+ + S            
Sbjct: 63   IVGLTIWLD----------STRGIDNQFALVLLAKNINGYHNLLRISSAKMTE--ISAKP 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +  + L+    + L+++       ++       +  A+  +  +++   D   + L  +
Sbjct: 111  TLTFNDLRAY-WKDLVVIVPPVRSEVNELLERGMANDAQALIEEYQQS-IDSPDLFLGIN 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
                      + Q+A    +  +   +  +L+EED+ A  VL  +    V+   +   + 
Sbjct: 169  GQQSHVMRQTLTQMAQKAGIGCLPLPSVEYLNEEDHFATQVLRDIDSGKVLQHPELLAKG 228

Query: 249  TPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +++LK  +E V  +  L +A  L     +    +  + + +P LP+F        Q++
Sbjct: 229  GGNNWLKPATEFVREYGQLGDAEMLTQLDRVVAGINLEIPIVSPRLPQFATPN----QQD 284

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L       L              A+ Y+ RLD EL VI  M F+ YFLI+ D +Q+
Sbjct: 285  SFTYLTQLCQQALTQ-----LKENVPDAERYQARLDHELAVIKEMGFADYFLIIHDVVQF 339

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I  GPGRGS AGS+ AY L IT +DPL++ LLFERFLNP+R  MPD D+D   D+
Sbjct: 340  AHQKQILTGPGRGSAAGSLVAYLLKITSVDPLQYGLLFERFLNPERAQMPDIDLDIPDDQ 399

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+ V++YV ++YGH+ V QIITFG+L AK A+RDV R      ++++++  LIPN     
Sbjct: 400  REVVLQYVHDRYGHQHVGQIITFGTLAAKQAIRDVARVFGEMPNKINQISALIPNKLNIT 459

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  QA     R R+   + P    + E + +LEGL RH STHAAGIV+    L + VP+ 
Sbjct: 460  LK-QAAQTSHRLRDFIESSPKNRFMFETACRLEGLPRHFSTHAAGIVLSQDELVESVPVQ 518

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D    + ++Q++  ++E+ GL+K DFLGL+ L+L+   L+ + +   + ++  I  +D 
Sbjct: 519  -DGNEGMLMSQYSKNFVEQVGLLKMDFLGLRNLSLMNNILELVHRTEPQFEIEKIELNDP 577

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T G+FQ ES+G+R  L  + P     ++A+ +LYRPGP++NI  +  RK+
Sbjct: 578  QTLQLFQWGDTSGVFQFESTGIRNVLRKVHPTNFGLVVAVNALYRPGPMENIDRFVKRKD 637

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E     + +++ +L ET G+++YQEQVM++A  + G SL +AD+LRRAM KK    ++
Sbjct: 638  HLEPYRFPNQILERVLGETYGILVYQEQVMEVASAMGGLSLGQADLLRRAMSKKKHAVIE 697

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + +  FI GA + G S+ IA  ++  +  FA+YGFNKSHA AY+ +++Q A++K HYP +
Sbjct: 698  QMRTNFIQGAVQKGYSEKIAQQVYRYIENFANYGFNKSHAVAYSKLAFQLAYLKAHYPGD 757

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  A +   + N  K K + Q+ ++  I  + P +N     +   + +I     AIKG+ 
Sbjct: 758  FYTALLNSVVGNDTKTKTYIQELKRLGIPTLAPDINQSSATYTYQNGQIRMGFTAIKGLR 817

Query: 847  TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                +H++        F +++D+  R+ ++ ++  V++ L+FAGALD FGY+R +L + L
Sbjct: 818  RDFIQHLLAERERGGQFKTVDDWLRRMGNQGIDEDVIDKLIFAGALDSFGYNRAELDEYL 877

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              + K   +  +N      ++F     T   +  L          + + E+ +LG Y S 
Sbjct: 878  PELLKGITFSGQN-----VDLFQKLMPTIKSRPDLP------LDEKLDREEELLGTYVSA 926

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP++ +  ++++      ++  A   G  +     + S +  +T+KG  + +   S+   
Sbjct: 927  HPVERFAELIKQRRFVQIQQFKA---GEKVTSIVYIRSIRSIRTKKGEPMAFAKISDQTD 983

Query: 1026 EYEANFFP 1033
            E EA  FP
Sbjct: 984  ECEAVIFP 991


>gi|315173327|gb|EFU17344.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX1346]
          Length = 1109

 Score =  847 bits (2189), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1034 (31%), Positives = 516/1034 (49%), Gaps = 60/1034 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +    +            ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEKEGHSE-----------LLLFAKNLKGYQQLMQLSSSKMTTEGPFYLA 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
                S L +     L  +T  + G + +  FF   Q A          F  + L+V    
Sbjct: 111  E-HQSLLSD-----LFAVTLSAKGEVAQ-TFFEDEQQAVHAFQQLASYFDPQSLFVEHSF 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKD 244
                ++ R   +       +LP VA      L+ E+  A  VL ++  +          +
Sbjct: 164  --SMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQTPE 221

Query: 245  RPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               +      +    +M+ I     E ++NT+++A  C   + +H  +LP F   +    
Sbjct: 222  IEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDN--- 276

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +   + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D 
Sbjct: 277  -QTAGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDV 328

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D  
Sbjct: 329  MDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIP 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN  
Sbjct: 389  DNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKL 448

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LV
Sbjct: 449  KITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLV 507

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+      ++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP
Sbjct: 508  PLQPGSN-EILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIP 566

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+ 
Sbjct: 567  LNDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFI 626

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K
Sbjct: 627  RRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKK 686

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + +D+++  F++GA + G  K  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K H
Sbjct: 687  DVLDEERNHFVNGALQQGYPKETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVH 746

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
            YP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  ++
Sbjct: 747  YPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSS 806

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R Q
Sbjct: 807  LKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQ 866

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L   L++  +         +    ++    K    +              ++      LG
Sbjct: 867  LAVGLESNIQSILL-----SGGSMDLLETLKPKEEEIADYPLEERLEQEEQY------LG 915

Query: 961  FYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y SGHP + +K   L K      +     +     +L   V + +  +T+KG ++ +V 
Sbjct: 916  VYLSGHPTEEFKKTRLAKQT----QLVHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVD 971

Query: 1020 FSEPAKEYEANFFP 1033
              +         FP
Sbjct: 972  GDDTTGSISLTLFP 985


>gi|255971496|ref|ZP_05422082.1| DNA polymerase III alpha subunit [Enterococcus faecalis T1]
 gi|255974111|ref|ZP_05424697.1| DNA polymerase III alpha subunit [Enterococcus faecalis T2]
 gi|256617966|ref|ZP_05474812.1| DNA polymerase III alpha subunit [Enterococcus faecalis ATCC 4200]
 gi|257089451|ref|ZP_05583812.1| DNA polymerase III alpha subunit [Enterococcus faecalis CH188]
 gi|307275526|ref|ZP_07556668.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX2134]
 gi|307278911|ref|ZP_07559971.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0860]
 gi|312904606|ref|ZP_07763764.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0635]
 gi|312952684|ref|ZP_07771546.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0102]
 gi|21314374|gb|AAM46913.1|AF508326_1 DNA polymerase III E [Enterococcus faecalis]
 gi|255962514|gb|EET94990.1| DNA polymerase III alpha subunit [Enterococcus faecalis T1]
 gi|255966983|gb|EET97605.1| DNA polymerase III alpha subunit [Enterococcus faecalis T2]
 gi|256597493|gb|EEU16669.1| DNA polymerase III alpha subunit [Enterococcus faecalis ATCC 4200]
 gi|256998263|gb|EEU84783.1| DNA polymerase III alpha subunit [Enterococcus faecalis CH188]
 gi|306504393|gb|EFM73603.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0860]
 gi|306507914|gb|EFM77042.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX2134]
 gi|310629200|gb|EFQ12483.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0102]
 gi|310632119|gb|EFQ15402.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0635]
 gi|315153119|gb|EFT97135.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0031]
 gi|315577423|gb|EFU89614.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0630]
          Length = 1109

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1034 (31%), Positives = 517/1034 (50%), Gaps = 60/1034 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +    +            ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEKEGHSE-----------LLLFAKNLKGYQQLMQLSSSKMTTEGPFYLA 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
                S L +     L  +T  + G + +  FF   Q A          F  + L+V    
Sbjct: 111  E-HQSLLSD-----LFAVTLSAKGEVAQ-TFFEDEQQAVHAFQQLASYFDPQSLFVEHSF 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKD 244
                ++ R   +       +LP VA      L+ E+  A  VL ++  +          +
Sbjct: 164  --SMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQTPE 221

Query: 245  RPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               +      +    +M+ I     E ++NT+++A  C   + +H  +LP F   +    
Sbjct: 222  IEGLNYLREAETTMEQMLQIAG--SEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDN--- 276

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +   + LR+  +  L  R+           + Y++RL+ EL +I  M F  YFLIV D 
Sbjct: 277  -QTAGSYLRSLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDV 328

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D  
Sbjct: 329  MDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIP 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN  
Sbjct: 389  DNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKL 448

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LV
Sbjct: 449  KITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLV 507

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+      ++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP
Sbjct: 508  PLQPGSN-EILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLNQIP 566

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+ 
Sbjct: 567  LDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFI 626

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K
Sbjct: 627  RRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKK 686

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K H
Sbjct: 687  DVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVH 746

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
            YP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  ++
Sbjct: 747  YPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSS 806

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R Q
Sbjct: 807  LKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQ 866

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L   L++  +         +    ++    K    +              ++      LG
Sbjct: 867  LAVGLESNIQSILL-----SGGSMDLLETLKPKEEEIADYPLEERLEQEEQY------LG 915

Query: 961  FYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y SGHP + +K   L K      +     +     +L   V + +  +T+KG ++ +V 
Sbjct: 916  VYLSGHPTEEFKKTRLAKQT----QLVHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVD 971

Query: 1020 FSEPAKEYEANFFP 1033
              +         FP
Sbjct: 972  GDDTTGSISLTLFP 985


>gi|256761801|ref|ZP_05502381.1| DNA polymerase III alpha subunit [Enterococcus faecalis T3]
 gi|256957134|ref|ZP_05561305.1| DNA polymerase III alpha subunit [Enterococcus faecalis DS5]
 gi|257086401|ref|ZP_05580762.1| DNA polymerase III alpha subunit [Enterococcus faecalis D6]
 gi|294779297|ref|ZP_06744701.1| DNA polymerase III, alpha subunit [Enterococcus faecalis PC1.1]
 gi|307269669|ref|ZP_07551002.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX4248]
 gi|256683052|gb|EEU22747.1| DNA polymerase III alpha subunit [Enterococcus faecalis T3]
 gi|256947630|gb|EEU64262.1| DNA polymerase III alpha subunit [Enterococcus faecalis DS5]
 gi|256994431|gb|EEU81733.1| DNA polymerase III alpha subunit [Enterococcus faecalis D6]
 gi|294453664|gb|EFG22062.1| DNA polymerase III, alpha subunit [Enterococcus faecalis PC1.1]
 gi|306513997|gb|EFM82588.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX4248]
 gi|315027021|gb|EFT38953.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX2137]
 gi|315031757|gb|EFT43689.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0017]
 gi|315034170|gb|EFT46102.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0027]
 gi|315171981|gb|EFU15998.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX1342]
 gi|323480286|gb|ADX79725.1| DNA polymerase III subunit alpha [Enterococcus faecalis 62]
          Length = 1109

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1034 (31%), Positives = 516/1034 (49%), Gaps = 60/1034 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +    +            ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEKEGHSE-----------LLLFAKNLKGYQQLMQLSSSKMTTEGPFYLA 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
                S L +     L  +T  + G + +  FF   Q A          F  + L+V    
Sbjct: 111  E-HQSLLSD-----LFAVTLSAKGEVAQ-TFFEDEQQAVHAFQQLASYFDPQSLFVEHSF 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKD 244
                ++ R   +       +LP VA      L+ E+  A  VL ++  +          +
Sbjct: 164  --SMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQTPE 221

Query: 245  RPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               +      +    +M+ I     E ++NT+++A  C   + +H  +LP F   +    
Sbjct: 222  IEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDN--- 276

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +   + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D 
Sbjct: 277  -QTAGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDV 328

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D  
Sbjct: 329  MDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIP 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN  
Sbjct: 389  DNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKL 448

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LV
Sbjct: 449  KITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLV 507

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+      ++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP
Sbjct: 508  PLQLGSN-EILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIP 566

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+ 
Sbjct: 567  LDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFI 626

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K
Sbjct: 627  RRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKK 686

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K H
Sbjct: 687  DVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVH 746

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
            YP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  ++
Sbjct: 747  YPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSS 806

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R Q
Sbjct: 807  LKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQ 866

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L   L++  +         +    ++    K    +              ++      LG
Sbjct: 867  LAVGLESNIQSILL-----SGGSMDLLETLKPKEEEIADYPLEERLEQEEQY------LG 915

Query: 961  FYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y SGHP + +K   L K      +     +     +L   V + +  +T+KG ++ +V 
Sbjct: 916  VYLSGHPTEEFKKTRLAKQT----QLVHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVD 971

Query: 1020 FSEPAKEYEANFFP 1033
              +         FP
Sbjct: 972  GDDTTGSISLTLFP 985


>gi|315168074|gb|EFU12091.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX1341]
          Length = 1109

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1034 (31%), Positives = 515/1034 (49%), Gaps = 60/1034 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +    +            ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEKEGHSE-----------LLLFAKNLKGYQQLMQLSSSKMTTEGPFYLA 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
                S L +     L  +T  + G + +  FF   Q A          F  + L+V    
Sbjct: 111  E-HQSLLSD-----LFAVTLSAKGEVAQ-TFFEDEQQAVHAFQQLASYFDPQSLFVEHSF 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKD 244
                ++ R   +       +LP VA      L+ E+  A  VL ++  +          +
Sbjct: 164  --SMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQTPE 221

Query: 245  RPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               +      +    +M+ I     E  +NT+++A  C   + +H  +LP F   +    
Sbjct: 222  IEGLNYLREAETTMEQMLQIAG--AEVAQNTIQLAENCRVDIPLHQKLLPHFPVPDN--- 276

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +   + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D 
Sbjct: 277  -QTAGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDV 328

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D  
Sbjct: 329  MDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIP 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN  
Sbjct: 389  DNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKL 448

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LV
Sbjct: 449  KITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLV 507

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+      ++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP
Sbjct: 508  PLQPGSN-EILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLNQIP 566

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+ 
Sbjct: 567  LDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFI 626

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K
Sbjct: 627  RRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKK 686

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K H
Sbjct: 687  DVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVH 746

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
            YP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  ++
Sbjct: 747  YPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSS 806

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R Q
Sbjct: 807  LKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQ 866

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L   L++  +         +    ++    K    +              ++      LG
Sbjct: 867  LAVGLESNIQSILL-----SGGSMDLLETLKPKEEEIADYPLEERLEQEEQY------LG 915

Query: 961  FYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y SGHP + +K   L K      +     +     +L   V + +  +T+KG ++ +V 
Sbjct: 916  VYLSGHPTEEFKKTRLAKQT----QLVHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVD 971

Query: 1020 FSEPAKEYEANFFP 1033
              +         FP
Sbjct: 972  GDDTTGSISLTLFP 985


>gi|116048576|ref|YP_792625.1| error-prone DNA polymerase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115583797|gb|ABJ09812.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 1031

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/1044 (27%), Positives = 473/1044 (45%), Gaps = 82/1044 (7%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +  +L +  ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q
Sbjct: 1    MAAWLVRMSAYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQ 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A    +Q I+G                 +      P +VLL    EGYQ L  L++R  
Sbjct: 61   AAREHQVQLIVGS----------------EIRLEQGPKLVLLAEDLEGYQNLCRLITRGR 104

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 K   R+    LQ+    GL+ +           +  N  +  +++    ++ F  
Sbjct: 105  -RQADKGHYRLLREDLQQPLA-GLLAI-----------WLPNDHE--DEQAAWLRERFPQ 149

Query: 181  RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            RL++ ++ HRG  D  R  +++ LA    LP VA  +    +       D + A+ +   
Sbjct: 150  RLWLGVELHRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLP 209

Query: 240  VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIE 297
            VS+         + +L+    +  I+   P+AL   T++IA RC F L+      PR + 
Sbjct: 210  VSEAGAYLFPNGERHLRTLEALQGIY---PQALLAETLKIAERCRFDLEQLKYQYPRELV 266

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                D      + LR+    G+  R   GA AK       R++++ EL +IA + +  YF
Sbjct: 267  PAGHD----PASWLRHLTEQGIARRWPNGASAK------VRKQIERELELIAELGYESYF 316

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D + +A+   I +  GRGS A S   +AL IT++DP R +LLFERFL+ +R   PD
Sbjct: 317  LTVQDIVAFARGREI-LCQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPD 375

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  +RR+EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L  
Sbjct: 376  IDVDFEHERREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLAN 435

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                      S + + +           P + R+L ++ +L G  RH S H  G VI ++
Sbjct: 436  CCGRWSDQAPSAERLEE----AGFDPQSPILRRVLALTGELIGFPRHLSQHPGGFVISEQ 491

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--QRGVK 595
            PL  LVP+     ++  V Q++   ++  GL+K D L L  L+ L++S D +   + G +
Sbjct: 492  PLDTLVPVENASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKR 551

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            + ++ IP +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 552  LSIASIPSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPI 611

Query: 656  --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              D +  Y  R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EAD L
Sbjct: 612  QGDMVHPYLRRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADEL 671

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RR+M   K    ++  +ER   G   NG     A  IFE +  F  YGF +SHAA++A++
Sbjct: 672  RRSMAAWKRHGGLEHHRERLTRGMLANGYEADFAARIFEQIKGFGSYGFPESHAASFALL 731

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +Y ++W+K H P  F  A +           +  QDAR+  +Q  P  V     D  +  
Sbjct: 732  TYASSWLKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLEP 791

Query: 833  N-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   I   L  I+G     AR I +    +PF  + D   R      + R LE L  
Sbjct: 792  FGQAQPAIRLGLRMIRGFREEDARRIEQVREAQPFLDVHDLGRRARL---DARALELLAD 848

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGAL      R +   ++ ++                 +FA         ++L    + +
Sbjct: 849  AGALRGLAGHRHKARWAVASV------------EPQLPLFAEGTVIEESTVSLP---LPS 893

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                  ++  +LG     HPL + +  L+    +   E      G  IR+A +VV +Q+ 
Sbjct: 894  RGEELLSDYALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVVGRQRP 953

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANF 1031
            +T  G  I ++T  +         
Sbjct: 954  QTASG--ITFITLEDEFGMVNVVV 975


>gi|315149565|gb|EFT93581.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0012]
          Length = 1109

 Score =  846 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/1034 (31%), Positives = 519/1034 (50%), Gaps = 60/1034 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +    +            ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEKEGHSE-----------LLLFAKNLKGYQQLMQLSSSKMTTEGPFYLA 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
                S L +     L  +T  + G + +  FF   Q A          F  + L+V    
Sbjct: 111  E-HQSLLSD-----LFAVTLSAKGEVAQ-TFFEDEQQAVHAFQQLASYFDPQSLFVEHSF 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKD 244
                ++ R   +       +LP VA      L+ E+  A  VL ++  +          +
Sbjct: 164  --SMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQTPE 221

Query: 245  RPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               +      +    +M+ I     E ++NT+++A  C   + +H  +LP F   +    
Sbjct: 222  IEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDN--- 276

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +   + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D 
Sbjct: 277  -QTAGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDV 328

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D  
Sbjct: 329  MDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIP 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN  
Sbjct: 389  DNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKL 448

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LV
Sbjct: 449  KITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLV 507

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+      ++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP
Sbjct: 508  PLQLGSN-EILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIP 566

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+ 
Sbjct: 567  LDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFI 626

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K
Sbjct: 627  RRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKK 686

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K H
Sbjct: 687  DVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVH 746

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
            YP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  ++
Sbjct: 747  YPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSS 806

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R Q
Sbjct: 807  LKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQ 866

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L   L++  +         +    ++    K    +              ++      LG
Sbjct: 867  LAVGLESNIQSILL-----SGGSMDLLETLKPKEEEIADYPLEERLEQEEQY------LG 915

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y SGHP + +    +K  +    + V  + GN   +L   V + +  +T+KG ++ +V 
Sbjct: 916  VYLSGHPTEEF----KKTRLAKQTQLVHELVGNQPTKLLIYVKNIRTIRTKKGEQMAFVD 971

Query: 1020 FSEPAKEYEANFFP 1033
              +         FP
Sbjct: 972  GDDTTGSISLTLFP 985


>gi|256960227|ref|ZP_05564398.1| DNA polymerase III alpha subunit [Enterococcus faecalis Merz96]
 gi|293382589|ref|ZP_06628522.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|293387817|ref|ZP_06632359.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|312906805|ref|ZP_07765802.1| putative DNA polymerase III DnaE [Enterococcus faecalis DAPTO 512]
 gi|312978940|ref|ZP_07790666.1| putative DNA polymerase III DnaE [Enterococcus faecalis DAPTO 516]
 gi|256950723|gb|EEU67355.1| DNA polymerase III alpha subunit [Enterococcus faecalis Merz96]
 gi|291080032|gb|EFE17396.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|291082792|gb|EFE19755.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|310627059|gb|EFQ10342.1| putative DNA polymerase III DnaE [Enterococcus faecalis DAPTO 512]
 gi|311288377|gb|EFQ66933.1| putative DNA polymerase III DnaE [Enterococcus faecalis DAPTO 516]
          Length = 1109

 Score =  846 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/1034 (31%), Positives = 522/1034 (50%), Gaps = 60/1034 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +    +            ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEKEGHSE-----------LLLFAKNLKGYQQLMQLSSSKMTTEGPFYLA 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
                S L +     L  +T  + G + +  FF   Q A          F  + L+V    
Sbjct: 111  E-HQSLLSD-----LFAVTLSAKGEVAQ-TFFEDEQQAVHAFQQLASYFDPQSLFVEHSF 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
                ++ R   +       +LP VA      L+ E+  A  VL ++  +  ++   + P 
Sbjct: 164  --SMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQTPE 221

Query: 248  VTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            +    YL+       +M+ I     E ++NT+++A  C   + +H  +LP F   +    
Sbjct: 222  IEGLDYLREAETTMEQMLQIAG--SEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDN--- 276

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +   + LR+  +  L  R+           + Y++RL+ EL +I  M F  YFLIV D 
Sbjct: 277  -QTAGSYLRSLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDV 328

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D  
Sbjct: 329  MDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIP 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN  
Sbjct: 389  DNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKL 448

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LV
Sbjct: 449  KITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLV 507

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+      ++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP
Sbjct: 508  PLQPGSN-EILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIP 566

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+ 
Sbjct: 567  LDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFI 626

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K
Sbjct: 627  RRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKK 686

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K H
Sbjct: 687  DVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVH 746

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
            YP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  ++
Sbjct: 747  YPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSS 806

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R Q
Sbjct: 807  LKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQ 866

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L   L++  +         +    ++    K    +              ++      LG
Sbjct: 867  LAVGLESNIQSILL-----SGGSMDLLETLKPKEEEIADYPLEERLEQEEQY------LG 915

Query: 961  FYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y SGHP + +K   L K      +     +     +L   V + +  +T+KG ++ +V 
Sbjct: 916  VYLSGHPTEEFKKTRLAKQT----QLVHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVD 971

Query: 1020 FSEPAKEYEANFFP 1033
              +         FP
Sbjct: 972  GDDTTGSISLTLFP 985


>gi|308154503|ref|NP_249360.3| DNA polymerase alpha chain [Pseudomonas aeruginosa PAO1]
 gi|71151832|sp|Q9I5Q2|DNAE2_PSEAE RecName: Full=Error-prone DNA polymerase
 gi|9946548|gb|AAG04058.1|AE004502_1 probable DNA polymerase alpha chain [Pseudomonas aeruginosa PAO1]
          Length = 1031

 Score =  846 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/1044 (27%), Positives = 467/1044 (44%), Gaps = 82/1044 (7%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +  +L +  ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q
Sbjct: 1    MAAWLVRMSAYAELHCLSNFSFQRGASSATELFARAARLGYRALAITDECSLAGIVRAWQ 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A    +Q I+G                 +      P +VLL    EGYQ L  L++R  
Sbjct: 61   AAREHQVQLIVGS----------------EIRLEQGPKLVLLAEDLEGYQNLCRLITRGR 104

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 K   R+    LQ+     L +      G               ++    ++ F  
Sbjct: 105  -RQADKGHYRLLREDLQQPLAGLLAIWLPNDHGD--------------EQAAWLRERFPQ 149

Query: 181  RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            RL++ ++ HRG  D  R  +++ LA    LP VA  +    +       D + A+ +   
Sbjct: 150  RLWLGVELHRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLP 209

Query: 240  VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIE 297
            VS+         + +L+    +  I+   P+AL   T++IA RC F L+      PR + 
Sbjct: 210  VSEAGAYLFPNGERHLRTLEALQGIY---PQALLAETLKIAERCRFDLEQLKYQYPRELV 266

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                D      + LR+    G+  R   GA AK       R++++ EL +IA + +  YF
Sbjct: 267  PAGHD----PASWLRHLTEQGIARRWPNGASAK------VRKQIERELELIAELGYESYF 316

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D + +A+   I +  GRGS A S   +AL IT++DP R +LLFERFL+ +R   PD
Sbjct: 317  LTVQDIVAFARGRKI-LCQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPD 375

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  +RR+EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L  
Sbjct: 376  IDVDFEHERREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLAN 435

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                      S + + +           P + R+L ++ +L G  RH S H  G VI ++
Sbjct: 436  CCGRWSDQAPSAERLEE----AGFDPQSPILRRVLALTDELIGFPRHLSQHPGGFVISEQ 491

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--QRGVK 595
            PL  LVP+     ++  V Q++   ++  GL+K D L L  L+ L++S D +   + G +
Sbjct: 492  PLDTLVPVENASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKR 551

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            + ++ IP +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 552  LSIASIPSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPI 611

Query: 656  --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              D +  Y  R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EAD L
Sbjct: 612  QGDMVHPYLRRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADEL 671

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RR+M   K    ++  +ER   G    G     A  IFE +  F  YGF +SHAA++A++
Sbjct: 672  RRSMAAWKRHGGLEHHRERLTRGMLAKGYEADFAARIFEQIKGFGSYGFPESHAASFALL 731

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +Y ++W+K H P  F  A +           +  QDAR+  +Q  P  V     D  +  
Sbjct: 732  TYASSWLKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLES 791

Query: 833  N-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   I   L  I+G     AR I +    +PF  + D   R      + R LE L  
Sbjct: 792  FGQAQPAIRLGLRMIRGFREEDARRIEQVREAEPFLDVHDLGRRARL---DARALELLAD 848

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGAL      R +   ++ ++                 +FA         ++L    + +
Sbjct: 849  AGALRGLAGHRHKARWAVASV------------EPQLPLFAEGTAIEESTVSLP---LPS 893

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                  ++  +LG     HPL + +  L+    +   E      G  IR+A +VV +Q+ 
Sbjct: 894  RGEELLSDYALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVVGRQRP 953

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANF 1031
            +T  G  I ++T  +         
Sbjct: 954  QTASG--ITFITLEDEFGMVNVVV 975


>gi|229548984|ref|ZP_04437709.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|257421291|ref|ZP_05598281.1| DNA polymerase III subunit alpha [Enterococcus faecalis X98]
 gi|229306005|gb|EEN72001.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|257163115|gb|EEU93075.1| DNA polymerase III subunit alpha [Enterococcus faecalis X98]
 gi|315156892|gb|EFU00909.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0043]
 gi|315157679|gb|EFU01696.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0312]
          Length = 1109

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1034 (31%), Positives = 516/1034 (49%), Gaps = 60/1034 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +    +            ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEKEGHSE-----------LLLFAKNLKGYQQLMQLSSSKMTTEGPFYLA 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
                S L +     L  +T  + G + +  FF   Q A          F  + L+V    
Sbjct: 111  E-HQSLLSD-----LFAVTLSAKGEVAQ-TFFEDEQQAVHAFQQLASYFDPQSLFVEHSF 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKD 244
                ++ R   +       +LP VA      L+ E+  A  VL ++  +          +
Sbjct: 164  --SMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQTPE 221

Query: 245  RPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               +      +    +M+ I     E ++NT+++A  C   + +H  +LP F   +    
Sbjct: 222  IEGLNYLREAETTMEQMLQIAG--SEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDN--- 276

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +   + LR+  +  L  R+           + Y++RL+ EL +I  M F  YFLIV D 
Sbjct: 277  -QTAGSYLRSLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDV 328

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D  
Sbjct: 329  MDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIP 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN  
Sbjct: 389  DNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKL 448

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LV
Sbjct: 449  KITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLV 507

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+      ++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP
Sbjct: 508  PLQPGSN-EILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLNQIP 566

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+ 
Sbjct: 567  LDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFI 626

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K
Sbjct: 627  RRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKK 686

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K H
Sbjct: 687  DVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVH 746

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
            YP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  ++
Sbjct: 747  YPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSS 806

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R Q
Sbjct: 807  LKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQ 866

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L   L++  +         +    ++    K    +              ++      LG
Sbjct: 867  LAVGLESNIQSILL-----SGGSMDLLETLKPKEEEIADYPLEERLEQEEQY------LG 915

Query: 961  FYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y SGHP + +K   L K      +           +L   V + +  +T+KG ++ +V 
Sbjct: 916  VYLSGHPTEEFKKTRLAKQT----QLVHELFENQPTKLLIYVKNIRTIRTKKGEQMAFVD 971

Query: 1020 FSEPAKEYEANFFP 1033
              +         FP
Sbjct: 972  GDDTTGSISLTLFP 985


>gi|313206116|ref|YP_004045293.1| DNA polymerase iii, alpha subunit [Riemerella anatipestifer DSM
            15868]
 gi|312445432|gb|ADQ81787.1| DNA polymerase III, alpha subunit [Riemerella anatipestifer DSM
            15868]
 gi|315022923|gb|EFT35946.1| DNA polymerase III alpha subunit [Riemerella anatipestifer RA-YM]
 gi|325336439|gb|ADZ12713.1| DNA polymerase III, alpha subunit [Riemerella anatipestifer RA-GD]
          Length = 1550

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/1038 (31%), Positives = 533/1038 (51%), Gaps = 80/1038 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59
             + +   HS +S L+   S+ +++DK  ++Q PA+ + D  N+  A +F           
Sbjct: 247  DYFNFHNHSIFSSLQSTTSIGDLIDKAKSNQFPAVGMVDLGNMMGAFKFVSDVEKYNSGV 306

Query: 60   -----------QKACAAG----------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS 98
                       QKA   G           + +     +  + D  +     K       +
Sbjct: 307  KKAHQEYLANKQKAEEEGADFNENAPESKELMAVLGCEFYISDRPEQKQFTKDDPDRRTN 366

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +VLL     GY+ L +L S  Y+        R+    + +   + +I +T G  G I  A
Sbjct: 367  VVLLAKNFNGYKNLAKLSSLGYVNGFYFGVPRVSREMVAQY-KDDVIAVTSGIYGDIPDA 425

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNS 217
                  Q  E+R   +K+ FG+  YV LQ H   +    ++ ++  A  + + ++A N +
Sbjct: 426  ILNFGEQKGEERFKWWKETFGEDFYVQLQNHGLQEEEHLNEVLLDFADRYNVKILAQNET 485

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEA 270
             +  + D    D++  +     +S          +   + + Y+K+  E+   F   P+A
Sbjct: 486  FYTDKSDANIQDIVSCIKDGEKLSTPVGKGFGKRKGLRSQEFYIKDAEELKQCFRQYPDA 545

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKEC--------DDIQKEEENELRNKAVAGLEVR 322
             E   E+  +          +LP+F   E         D  ++ E   LR+    G + R
Sbjct: 546  FEAYTELLSKFEPYTLKRDVLLPKFDIPEEFQSEEDLKDGGKRGENAYLRHLTYEGAKKR 605

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
              +          D R+RLDFEL +IA   + GYFLIV DF   A+K  + VGPGRGS A
Sbjct: 606  YDE-------ITDDIRERLDFELEIIANTGYPGYFLIVQDFCNEARKMGVWVGPGRGSAA 658

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GS  AY + IT++DP+++ LLFERFLNP+R+SMPD DIDF  + RD +I++V +KYG   
Sbjct: 659  GSAVAYCIGITNVDPIKYDLLFERFLNPERISMPDIDIDFDDEGRDRIIKWVIDKYGKSN 718

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-- 500
            VAQIIT+  L  K+A++D GR L +P  + + + KL+P+ P   +  +A++   + ++  
Sbjct: 719  VAQIITYSVLGGKSAIKDAGRVLDVPIPETNNIAKLVPSVPGMNI-AKALSKYDKLKDED 777

Query: 501  --------ARLADPSVDR--LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                    A L +P+  R  +L+ ++K+EG  R+   HA G++I    +S LVP+    +
Sbjct: 778  KVLVDEMKAVLDNPNDQRFPVLDSAKKMEGCIRNTGIHACGVIITPEDISNLVPISIAAK 837

Query: 551  S-DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D+ V+QF+    E AGL+K DFLGL+TLT+++ +L  + +R  + ++   I  DD +T
Sbjct: 838  DADILVSQFDNSVAESAGLLKMDFLGLRTLTIIKDALKLVKERHGIDINPDEISLDDAKT 897

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y L     T+GIFQ ES GM++ +  ++P    D+IA+ +LYRPGPI  I  + NRK+G 
Sbjct: 898  YQLFKEGRTIGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPIKYIPNFINRKHGV 957

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E+I+   P  +  LKET G+ +YQEQVM ++Q L+ ++  EAD LR+AMGKK  + ++K 
Sbjct: 958  EEIIYDLPETEEYLKETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKQIDVLNKM 1017

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
              +FI G  KN + +     I+     FA+Y FNKSH+  YA+I+YQTA++K +YP E++
Sbjct: 1018 YPKFIEGGKKNNLDEEKLNKIWNDWKAFAEYAFNKSHSTCYALIAYQTAFLKANYPAEYM 1077

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGT 847
            A+ M+  ++N  +I  F +D R   + ++ P VN     F V D   I + L AIKG+G 
Sbjct: 1078 ASVMSNNINNTAQITMFMEDCRAMGVDVLGPDVNESQYKFSVNDKGQIRFGLGAIKGIGE 1137

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQ--- 903
              +  I +  A   F ++ DF  RV   ++N+RV+ESLV AGA D    Y R Q      
Sbjct: 1138 GPSEAISQERAKGKFKNIYDFFERVTPSQVNKRVVESLVMAGAFDEVDTYHRAQYFDIDN 1197

Query: 904  ----SLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQRV 958
                +++ + +Y Q  ++++     ++FA   +    ++  +       +  +   E+ +
Sbjct: 1198 SGKTNIEKLIRYGQSFQESKNEVENSLFADFAEEIQIEQPKIAPAMEWQNMHKLNKEKEI 1257

Query: 959  LGFYFSGHPLDVYKPILR 976
            +GFY S HPLD YK   R
Sbjct: 1258 IGFYLSAHPLDEYKYQFR 1275



 Score = 41.5 bits (96), Expect = 0.69,   Method: Composition-based stats.
 Identities = 5/36 (13%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 993  NNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEY 1027
                +A ++     +  +  G +I ++T  + +  Y
Sbjct: 1385 KEYTVAGLITEYTIRDGKNSGEKIAFLTLEDYSGSY 1420


>gi|315165092|gb|EFU09109.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX1302]
          Length = 1109

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/1034 (30%), Positives = 515/1034 (49%), Gaps = 60/1034 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L   +EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGVVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +    +            ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEKEGHSE-----------LLLFAKNLKGYQQLMQLSSSKMTTEGPFYLA 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
                S L +     L  +T  + G + +  FF   Q A          F  + L+V    
Sbjct: 111  E-HQSLLSD-----LFAVTLSAKGEVAQ-TFFEDEQQAVHAFQQLASYFDPQSLFVEHSF 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKD 244
                ++ R   +       +LP VA      L+ E+  A  VL ++  +          +
Sbjct: 164  --SMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQTPE 221

Query: 245  RPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               +      +    +M+ I     E ++NT+++A  C   + +H  +LP F   +    
Sbjct: 222  IEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDN--- 276

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +   + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D 
Sbjct: 277  -QTAGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDV 328

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D  
Sbjct: 329  MDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIP 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN  
Sbjct: 389  DNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKL 448

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LV
Sbjct: 449  KITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLV 507

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+      ++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP
Sbjct: 508  PLQLGSN-EILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIP 566

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+ 
Sbjct: 567  LDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFI 626

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K
Sbjct: 627  RRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKK 686

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K H
Sbjct: 687  DVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVH 746

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
            YP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  ++
Sbjct: 747  YPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSS 806

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R Q
Sbjct: 807  LKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQ 866

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L   L++  +         +    ++    K    +              ++      LG
Sbjct: 867  LAVGLESNIQSILL-----SGGSMDLLETLKPKEEEIADYPLEERLEQEEQY------LG 915

Query: 961  FYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y SGHP + +K   L K      +     +     +L   V + +  +T+KG ++ +V 
Sbjct: 916  VYLSGHPTEEFKKTRLAKQT----QLVHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVD 971

Query: 1020 FSEPAKEYEANFFP 1033
              +         FP
Sbjct: 972  GDDTTGSISLTLFP 985


>gi|307286902|ref|ZP_07566982.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0109]
 gi|312900994|ref|ZP_07760287.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0470]
 gi|306502027|gb|EFM71314.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0109]
 gi|311291895|gb|EFQ70451.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0470]
          Length = 1109

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/1034 (30%), Positives = 515/1034 (49%), Gaps = 60/1034 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L   +EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGVVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +    +            ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEKEGHSE-----------LLLFAKNLKGYQQLMQLSSSKMTTEGPFYLA 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
                S L +     L  +T  + G + +  FF   Q A          F  + L+V    
Sbjct: 111  E-HQSLLSD-----LFAVTLSAKGEVAQ-TFFEDEQQAVHAFQQLASYFDPQSLFVEHSF 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKD 244
                ++ R   +       +LP VA      L+ E+  A  VL ++  +          +
Sbjct: 164  --SMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQTPE 221

Query: 245  RPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               +      +    +M+ I     E ++NT+++A  C   + +H  +LP F   +    
Sbjct: 222  IEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDN--- 276

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +   + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D 
Sbjct: 277  -QTAGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDV 328

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D  
Sbjct: 329  MDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIP 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN  
Sbjct: 389  DNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKL 448

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LV
Sbjct: 449  KITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLV 507

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+      ++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP
Sbjct: 508  PLQLGSN-EILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIP 566

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+ 
Sbjct: 567  LDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFI 626

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K
Sbjct: 627  RRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKK 686

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K H
Sbjct: 687  DVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVH 746

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
            YP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  ++
Sbjct: 747  YPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSS 806

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R Q
Sbjct: 807  LKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQ 866

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L   L++  +         +    ++    K    +              ++      LG
Sbjct: 867  LAVGLESNIQSILL-----SGGSMDLLETLKPKEEEIADYPLEERLEQEEQY------LG 915

Query: 961  FYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y SGHP + +K   L K      +     +     +L   V + +  +T+KG ++ +V 
Sbjct: 916  VYLSGHPTEEFKKTRLAKQT----QLVHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVD 971

Query: 1020 FSEPAKEYEANFFP 1033
              +         FP
Sbjct: 972  GDDTTGSISLTLFP 985


>gi|254244906|ref|ZP_04938228.1| hypothetical protein PA2G_05781 [Pseudomonas aeruginosa 2192]
 gi|126198284|gb|EAZ62347.1| hypothetical protein PA2G_05781 [Pseudomonas aeruginosa 2192]
          Length = 1031

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/1044 (27%), Positives = 467/1044 (44%), Gaps = 82/1044 (7%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +  +L +  ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q
Sbjct: 1    MAAWLVRMSAYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQ 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A    +Q IIG                 +      P +VLL    EGYQ L  L++R  
Sbjct: 61   AAREHQVQLIIGS----------------EIRLEQGPKLVLLAEDLEGYQNLCRLITRGR 104

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 K   R+    LQ+     L +      G               ++    ++ F  
Sbjct: 105  -RQADKGHYRLLREDLQQPLAGLLAIWLPNDHGD--------------EQAAWLRERFPQ 149

Query: 181  RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            RL++ ++ HRG  D  R  +++ LA    LP VA  +    +       D + A+ +   
Sbjct: 150  RLWLGVELHRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLP 209

Query: 240  VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIE 297
            VS+         + +L+    +  I+   P+AL   T++IA RC F L+      PR + 
Sbjct: 210  VSEAGAYLFPNGERHLRTLEALQGIY---PQALLAETLKIAERCRFDLEQLKYQYPRELV 266

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                D      + LR+    G+  R   GA AK       R++++ EL +IA + +  YF
Sbjct: 267  PAGHD----PASWLRHLTEQGIARRWPNGASAK------VRKQIERELELIAELGYESYF 316

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D + +A+   I +  GRGS A S   +AL IT++DP R +LLFERFL+ +R   PD
Sbjct: 317  LTVQDIVAFARGRKI-LCQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPD 375

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  +RR+EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L  
Sbjct: 376  IDVDFEHERREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLAN 435

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                      S + + +           P + R+L ++ +L G  RH S H  G VI ++
Sbjct: 436  CCGRWSDQAPSAERLEE----AGFDPQSPILRRVLALTDELIGFPRHLSQHPGGFVISEQ 491

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--QRGVK 595
            PL  LVP+     ++  V Q++   ++  GL+K D L L  L+ L++S D +   + G +
Sbjct: 492  PLDTLVPVENASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKR 551

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            + ++ IP +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 552  LSIASIPSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPI 611

Query: 656  --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              D +  Y  R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EAD L
Sbjct: 612  QGDMVHPYLRRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADEL 671

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RR+M   K    ++  +ER   G    G     A  IFE +  F  YGF +SHAA++A++
Sbjct: 672  RRSMAAWKRHGGLEHHRERLTRGMLAKGYEADFAARIFEQIKGFGSYGFPESHAASFALL 731

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +Y ++W+K H P  F  A +           +  QDAR+  +Q  P  V     D  +  
Sbjct: 732  TYASSWLKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLES 791

Query: 833  N-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   I   L  I+G     AR I +    +PF  + D   R      + R LE L  
Sbjct: 792  FGQAQPAIRLGLRMIRGFREEDARRIEQVREAEPFLDVHDLGRRARL---DARALELLAD 848

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGAL      R +   ++ ++                 +FA         ++L    + +
Sbjct: 849  AGALRGLAGHRHKARWAVASV------------EPQLPLFAEGTAIEESTVSLP---LPS 893

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                  ++  +LG     HPL + +  L+    +   E      G  IR+A +VV +Q+ 
Sbjct: 894  RGEELLSDYALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVVGRQRP 953

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANF 1031
            +T  G  I ++T  +         
Sbjct: 954  QTASG--ITFITLEDEFGMVNVVV 975


>gi|256962530|ref|ZP_05566701.1| DNA polymerase III alpha subunit [Enterococcus faecalis HIP11704]
 gi|307272063|ref|ZP_07553328.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0855]
 gi|256953026|gb|EEU69658.1| DNA polymerase III alpha subunit [Enterococcus faecalis HIP11704]
 gi|306511283|gb|EFM80288.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0855]
          Length = 1109

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1034 (31%), Positives = 516/1034 (49%), Gaps = 60/1034 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEVCQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +    +            ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEKEGHSE-----------LLLFAKNLKGYQQLMQLSSSKMTTEGPFYLA 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
                S L +     L  +T  + G + +  FF   Q A          F  + L+V    
Sbjct: 111  E-HQSLLSD-----LFAVTLSAKGEVAQ-TFFEDEQQAVHAFQQLASYFDPQSLFVEHSF 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKD 244
                ++ R   +       +LP VA      L+ E+  A  VL ++  +          +
Sbjct: 164  --SMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQTPE 221

Query: 245  RPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               +      +    +M+ I     E ++NT+++A  C   + +H  +LP F   +    
Sbjct: 222  IEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDN--- 276

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +   + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D 
Sbjct: 277  -QTAGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDV 328

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D  
Sbjct: 329  MDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIP 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN  
Sbjct: 389  DNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKL 448

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LV
Sbjct: 449  KITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLV 507

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+      ++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP
Sbjct: 508  PLQPGSN-EILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLNQIP 566

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+ 
Sbjct: 567  LDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFI 626

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K
Sbjct: 627  RRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKK 686

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K H
Sbjct: 687  DVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVH 746

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
            YP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  ++
Sbjct: 747  YPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSS 806

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R Q
Sbjct: 807  LKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQ 866

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L   L++  +         +    ++    K    +              ++      LG
Sbjct: 867  LAVGLESNIQSILL-----SGGSMDLLETLKPKEEEIADYPLEERLEQEEQY------LG 915

Query: 961  FYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y SGHP + +K   L K      +     +     +L   V + +  +T+KG ++ +V 
Sbjct: 916  VYLSGHPTEEFKKTRLAKQT----QLVHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVD 971

Query: 1020 FSEPAKEYEANFFP 1033
              +         FP
Sbjct: 972  GDDTTGSISLTLFP 985


>gi|218893372|ref|YP_002442241.1| error-prone DNA polymerase [Pseudomonas aeruginosa LESB58]
 gi|218773600|emb|CAW29414.1| probable DNA polymerase alpha chain [Pseudomonas aeruginosa LESB58]
          Length = 1031

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/1044 (27%), Positives = 467/1044 (44%), Gaps = 82/1044 (7%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +  +L +  ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q
Sbjct: 1    MAAWLVRMSAYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQ 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A    +Q IIG                 +      P +VLL    EGYQ L  L++R  
Sbjct: 61   AAREHQVQLIIGS----------------EIRLEQGPKLVLLAEDLEGYQNLCRLITRGR 104

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 K   R+    LQ+     L +      G               ++    ++ F  
Sbjct: 105  -RQADKGHYRLLREDLQQPLAGLLAIWLPNDHGD--------------EQAAWLRERFPQ 149

Query: 181  RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            RL++ ++ HRG  D  R  +++ LA    LP VA  +    +       D + A+ +   
Sbjct: 150  RLWLGVELHRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLP 209

Query: 240  VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIE 297
            VS+         + +L+    +  I+   P+AL   T++IA RC F L+      PR + 
Sbjct: 210  VSEAGAYLFPNGERHLRTLEALQGIY---PQALLAETLKIAERCRFDLEQLKYQYPRELV 266

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                D      + LR+    G+  R   GA AK       R++++ EL +IA + +  YF
Sbjct: 267  PAGHD----PASWLRHLTEQGIARRWPNGASAK------VRKQIERELELIAELGYESYF 316

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D + +A+   I +  GRGS A S   +AL IT++DP R +LLFERFL+ +R   PD
Sbjct: 317  LTVQDIVAFARGREI-LCQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPD 375

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  +RR+EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L  
Sbjct: 376  IDVDFEHERREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLAN 435

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                      S + + +           P + R+L ++ +L G  RH S H  G VI ++
Sbjct: 436  CCGRWSDQAPSAERLEE----AGFDPQSPILRRVLALTDELIGFPRHLSQHPGGFVISEQ 491

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--QRGVK 595
            PL  LVP+     ++  V Q++   ++  GL+K D L L  L+ L++S D +   + G +
Sbjct: 492  PLDTLVPVENASMAERTVIQWDKDDLDAVGLLKVDILALGMLSALRRSFDLIHALRGGKR 551

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            + ++ IP +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 552  LSIASIPSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPI 611

Query: 656  --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              D +  Y  R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EAD L
Sbjct: 612  QGDMVHPYLRRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADEL 671

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RR+M   K    ++  +ER   G    G     A  IFE +  F  YGF +SHAA++A++
Sbjct: 672  RRSMAAWKRHGGLEHHRERLTRGMLAKGYEADFAARIFEQIKGFGSYGFPESHAASFALL 731

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +Y ++W+K H P  F  A +           +  QDAR+  +Q  P  V     D  +  
Sbjct: 732  TYASSWLKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLES 791

Query: 833  N-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   I   L  I+G     AR I +    +PF  + D   R      + R LE L  
Sbjct: 792  FGQAQPAIRLGLRMIRGFREEDARRIEQVREAEPFLDVHDLGRRARL---DARALELLAD 848

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGAL      R +   ++ ++                 +FA         ++L    + +
Sbjct: 849  AGALRGLAGHRHKARWAVASV------------EPQLPLFAEGTAIEESTVSLP---LPS 893

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                  ++  +LG     HPL + +  L+    +   E      G  IR+A +VV +Q+ 
Sbjct: 894  RGEELLSDYALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVVGRQRP 953

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANF 1031
            +T  G  I ++T  +         
Sbjct: 954  QTASG--ITFITLEDEFGMVNVVV 975


>gi|254239049|ref|ZP_04932372.1| hypothetical protein PACG_05227 [Pseudomonas aeruginosa C3719]
 gi|126170980|gb|EAZ56491.1| hypothetical protein PACG_05227 [Pseudomonas aeruginosa C3719]
          Length = 1031

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/1044 (27%), Positives = 474/1044 (45%), Gaps = 82/1044 (7%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +  +L +  ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q
Sbjct: 1    MAAWLVRMSAYAELHCLSNFSFQRGASSATELFARAARLGYRALAITDECSLAGIVRAWQ 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A    +Q I+G                 +      P +VLL    EGYQ L  L++R  
Sbjct: 61   AAREHQVQLIVGS----------------EIRLEQGPKLVLLAEDLEGYQNLCRLITRGR 104

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 K   R+    LQ+    GL+ +           +  N  +  ++++   ++ F  
Sbjct: 105  -RQADKGHYRLLREDLQQPLA-GLLAI-----------WLPNDHE--DEQVAWLRERFPQ 149

Query: 181  RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            RL++ ++ HRG  D  R  +++ LA    LP VA  +    +       D + A+ +   
Sbjct: 150  RLWLGVELHRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLP 209

Query: 240  VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIE 297
            VS+         + +L+    +  I+   P+AL   T++IA RC F L+      PR + 
Sbjct: 210  VSEAGAYLFPNGERHLRTLEALQGIY---PQALLAETLKIAERCRFDLEQLKYQYPRELV 266

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                D      + LR+    G+  R   GA AK       R++++ EL +IA + +  YF
Sbjct: 267  PAGHD----PASWLRHLTEQGIARRWPNGASAK------VRKQIERELELIAELGYESYF 316

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D + +A+   I +  GRGS A S   +AL IT++DP R +LLFERFL+ +R   PD
Sbjct: 317  LTVQDIVAFARGREI-LCQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPD 375

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  +RR+EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L  
Sbjct: 376  IDVDFEHERREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLAN 435

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                      S + + +           P + R+L ++ +L G  RH S H  G VI ++
Sbjct: 436  CCGRWSDQAPSAERLEE----AGFDPQSPILRRVLALTGELIGFPRHLSQHPGGFVISEQ 491

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--QRGVK 595
            PL  LVP+     ++  V Q++   ++  GL+K D L L  L+ L++S D +   + G +
Sbjct: 492  PLDTLVPVENASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKR 551

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            + ++ IP +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 552  LSIASIPSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPI 611

Query: 656  --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              D +  Y  R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EAD L
Sbjct: 612  QGDMVHPYLRRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADEL 671

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RR+M   K    ++  +ER   G   NG     A  IFE +  F  YGF +SHAA++A++
Sbjct: 672  RRSMAAWKRHGGLEHHRERLTRGMLANGYEADFAARIFEQIKGFGSYGFPESHAASFALL 731

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +Y ++W+K H P  F  A +           +  QDAR+  +Q  P  V     D  +  
Sbjct: 732  TYASSWLKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLES 791

Query: 833  N-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   I   L  I+G     AR I +    +PF  + D   R      + R LE L  
Sbjct: 792  FGQAQPAIRLGLRMIRGFREEDARRIEQVREAQPFLDVHDLGRRARL---DARALELLAD 848

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGAL      R +   ++ ++                 +FA         ++L    + +
Sbjct: 849  AGALRGLAGHRHKARWAVASV------------EPQLPLFAEGTVIEESTVSLP---LPS 893

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                  ++  +LG     HPL + +  L+    +   E      G  IR+A +V+ +Q+ 
Sbjct: 894  RGEELLSDYALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVIGRQRP 953

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANF 1031
            +T  G  I ++T  +         
Sbjct: 954  QTASG--ITFITLEDEFGMLNVVV 975


>gi|257083953|ref|ZP_05578314.1| DNA polymerase III alpha subunit [Enterococcus faecalis Fly1]
 gi|256991983|gb|EEU79285.1| DNA polymerase III alpha subunit [Enterococcus faecalis Fly1]
          Length = 1109

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/1034 (30%), Positives = 515/1034 (49%), Gaps = 60/1034 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +    +            ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEKEGHSE-----------LLLFAKNLKGYQQLMQLSSSKMTTEGPFYLA 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
                S L +     L  +T  + G + +  FF   Q A          F  + L+V    
Sbjct: 111  E-HQSLLSD-----LFAVTLSAKGEVAQ-TFFEDEQQAVHAFQQLASYFDPQSLFVEHSF 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKD 244
                ++ R   +       +LP VA      L+ E+  A  VL ++  +          +
Sbjct: 164  --SMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQTPE 221

Query: 245  RPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               +      +    +M+ I     E ++NT+++A  C   + +H  +LP F        
Sbjct: 222  IEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHFPVP----A 275

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +   + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D 
Sbjct: 276  NQTAGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDV 328

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D  
Sbjct: 329  MDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIP 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN  
Sbjct: 389  DNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKL 448

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LV
Sbjct: 449  KITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLV 507

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+      ++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP
Sbjct: 508  PLQPGSN-EILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIP 566

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+ 
Sbjct: 567  LNDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFI 626

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K
Sbjct: 627  RRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKK 686

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K H
Sbjct: 687  DVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVH 746

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
            YP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  ++
Sbjct: 747  YPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSS 806

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R Q
Sbjct: 807  LKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQ 866

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L   L++  +         +    ++    K    +              ++      LG
Sbjct: 867  LAVGLESNIQSILL-----SGGSMDLLETLKPKEEEIADYPLEERLEQEEQY------LG 915

Query: 961  FYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y SGHP + +K   L K      +     +     +L   V + +  +T+KG ++ +V 
Sbjct: 916  VYLSGHPTEEFKKTRLAKQT----QLVHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVD 971

Query: 1020 FSEPAKEYEANFFP 1033
              +         FP
Sbjct: 972  GDDTTGSISLTLFP 985


>gi|312140803|ref|YP_004008139.1| DNA polymerase iii alpha subunit dnae2 [Rhodococcus equi 103S]
 gi|311890142|emb|CBH49460.1| DNA polymerase III alpha subunit DnaE2 [Rhodococcus equi 103S]
          Length = 1093

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/1033 (27%), Positives = 475/1033 (45%), Gaps = 61/1033 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS++S L+GA     ++++       AIA+TD + ++  + F++ A   G++ 
Sbjct: 58   PYAELHTHSAFSFLDGASPPEELVEEAVRLGLDAIALTDHDGMYGVVRFAEAAKELGMRT 117

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + G       + +L  T +  TP P    +++L    EGY+RL   ++  +L    K   
Sbjct: 118  VFGA------ELSLDATPRTGTPDPGGTHLLVLARGQEGYRRLSRQIAAAHLAGGEKGKP 171

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R     L E       +LTG   G +  A        AE  L      F  DR+ V L  
Sbjct: 172  RYDYDALTEAAGGHWQILTGCRKGHVRSALAAGGPDAAEAALRDLVDRFGADRVTVELTH 231

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRP 246
                 D    + + ++A   +LP++A+  + F           + AV     + +     
Sbjct: 232  RGLPEDDEINAALAEIATRQQLPVIASTAAHFAGPPRRRLAMAMAAVRARQSLDEAAGWL 291

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T   +L++ +EM  +F+  PEA+     +   C+F L++ AP LP F   +       
Sbjct: 292  APTGGAHLRSGAEMARLFAQCPEAVAGAAALGLECAFDLRLIAPKLPPFDVPDG----HT 347

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E + LR   + G   R    +     +      +++ EL++I R+ F GYFL+V D + +
Sbjct: 348  EASWLRELTMQGARRRYGPPSANPAAY-----AQIEHELDIIERLTFPGYFLVVHDIVSF 402

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             K N+I +  GRGS A S   YA+ IT++DP+R  LLFERFL+P+R   PD D+D   DR
Sbjct: 403  CKDNDI-LCQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLSPERDGPPDIDVDIESDR 461

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+E I++V  KYG E  AQ+    + + K+++RD+ RAL     Q D   K +       
Sbjct: 462  REEAIQHVYTKYGREYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSKQVSRWTGVG 521

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                        +E     P    +LE++ ++EG  RH   H+ G+VI DRP++ + P+ 
Sbjct: 522  ------------QETDTDIPPA--VLELAAQIEGFPRHLGIHSGGMVICDRPIADVCPVE 567

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                 +  V Q++       GL+KFD LGL  L+ L   +D +A+   ++VDL+ +   +
Sbjct: 568  WARMENRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYMIDLVAEHKGIEVDLAQLDLSE 627

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
               Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI       Y  
Sbjct: 628  QAVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVHPYIR 687

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R+NG+E +V  HP ++  L  T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K+  
Sbjct: 688  RRNGREPVVYDHPCLEKALARTLGVPLFQEQLMQMAVDAAGFSAAEADQLRRAMGSKRSP 747

Query: 723  EEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            E+M++ + R   G  + +GI+  +A  I+E L  FA++GF +SH+ ++A + + ++W K 
Sbjct: 748  EKMERLRGRLYDGMRELHGITGDVADRIYEKLHAFANFGFPESHSQSFASLVFYSSWFKL 807

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI--YYSL 839
            H+P  F A  +  +       +    DAR+  +++    VN       +          L
Sbjct: 808  HHPAAFCAGLLRAQPMGFYSPQSLVADARRHGVRVHGADVNASLAHATLEACGTEVRLGL 867

Query: 840  AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
              ++G+G   A  I+ A A D PF S+ D   R+D        +ESL  AGAL CFG SR
Sbjct: 868  GEVRGIGDALAERIVAARAEDGPFRSILDLTGRIDLTTG---QVESLATAGALSCFGLSR 924

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             + L         A      R ++   + A  +               +       +   
Sbjct: 925  REALW-------AAGAAAGERPDRLPGMGASTRA--------PALPGMSDLELAAADVWA 969

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             G     +P +  +P L  +G+      +    G+ + +   V  +Q+  T  G  + +V
Sbjct: 970  TGVSPDSYPTEFLRPQLDALGVLPASRLLDVPDGDRVLVGGAVTHRQRPATAAG--VTFV 1027

Query: 1019 TFSEPAKEYEANF 1031
               +         
Sbjct: 1028 NLEDETGMVNVVC 1040


>gi|319935864|ref|ZP_08010290.1| hypothetical protein HMPREF9488_01121 [Coprobacillus sp. 29_1]
 gi|319809131|gb|EFW05612.1| hypothetical protein HMPREF9488_01121 [Coprobacillus sp. 29_1]
          Length = 1018

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1027 (33%), Positives = 555/1027 (54%), Gaps = 55/1027 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HLQV S+YS     + + +++    A    A+A+TD NN+F ALEFSQ+    GI+PI
Sbjct: 2    FGHLQVLSAYSFQNSTILIKDLIQDANAKHIEALALTDKNNMFGALEFSQECLKYGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +  + ++               +   +LL     GY  L+++   + L +       
Sbjct: 62   FGMEASVMIE-------------GEIYPFILLAKDDIGYFDLVKVCCDINLHED----KC 104

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L  L  +    + +++G + G ++R       + A K L +FK +F D  YV +Q H 
Sbjct: 105  IDLKSLA-LYKGHMYIISGSAQGIVERLVAKEMEEEAVKYLKSFKDIFQDNYYVMIQNHH 163

Query: 191  G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                +    +++ LA    + ++ +N  ++L + D  A D++ A      +  K  P +T
Sbjct: 164  IKLQQALNERIISLAKYCRVKILCSNEVIYLKKADALAVDLMQAANQGLTLESKYVP-IT 222

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + YLK   EM  +F    E L  T E+ + C   + +    LP F          E   
Sbjct: 223  EEKYLKTEDEMKMLFD--AEILAETREVVQNCKATIPLQDKHLPSFPVPH----HGEASE 276

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L+     GL+ R     I        Y +RL +EL +I +M F  YFLIV D++++AK 
Sbjct: 277  YLKGLCQMGLKKRFQNQKI-----PSQYVKRLQYELKIIHQMGFDDYFLIVWDYVRFAKV 331

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I VG GRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDF  DRRDE
Sbjct: 332  NKIQVGAGRGSAAGSLVAYVLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFQDDRRDE 391

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V+ YV  KYG + VAQI+TF +   + A++D+G+ + +P ++++ + K+IP  P +  ++
Sbjct: 392  VVHYVVEKYGQDHVAQIVTFNTYGPRVAIKDMGKVMGIPLARLEIIAKMIPTGPKNKKTI 451

Query: 490  QAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              +   S +F+     DP + +++  +  +E L R+ STHAAG+++  +PL +++P+   
Sbjct: 452  TTMYKTSAQFQSMINQDPLLKKIIGATSVIEHLPRNISTHAAGVILSKQPLREVIPLVLG 511

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-LSLIPFDDHE 607
              +   ++Q++  +IE+ GL+K DFLGLK LT++      + +   +   L+ +P +D +
Sbjct: 512  PTA-TLMSQYSKDYIEEVGLLKMDFLGLKNLTMIDYICKDIKRDINETVFLNQLPLNDQK 570

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY L+    T G+FQLES GMR  L  M+P C +DI+A ++L+RPGP++NI +Y  R+  
Sbjct: 571  TYELIARADTFGVFQLESQGMRNLLRKMKPYCFDDIVAAIALFRPGPMENIPLYLKRRGL 630

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +EK+V   P ++P+LK T GV+IYQEQ+MQ+AQ ++G+SL +AD+LR+A+ KK    M  
Sbjct: 631  QEKVVYPLPELEPILKSTYGVMIYQEQIMQVAQKMAGFSLGKADILRKAVSKKETGLMQS 690

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             KE FI+G    G  +  A+ IFEL+ KFA+YGF K+H+ AY  ++YQ A++K +YP+ F
Sbjct: 691  MKEEFIAGCIDKGYREEKAIEIFELIEKFANYGFGKAHSVAYGYVAYQLAYLKANYPLYF 750

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             A+ ++ E+ +        Q+ + +++ I+PPSVN     F V +  I YSL AIK VG 
Sbjct: 751  FASILSNELSSETTKLHCIQECKTYHVDILPPSVNYSHARFMVENGHIRYSLLAIKNVGY 810

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               + I+E   +  F+ + DF  R+D  KL+++++ESL+ AGALD F  SR  + ++LD 
Sbjct: 811  AGYKAIVEERKNGLFEDVYDFMMRMDESKLSKKMIESLIDAGALDEFQLSRNTMKKNLDT 870

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            I+ Y             N+         +K  L  +       +   E+ VLG Y + HP
Sbjct: 871  IRDYGNLK---------NMLG-----IDEKPVLTIYKDFQD-EKLRKEKEVLGIYLTMHP 915

Query: 968  LDVYKPILR--KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            +++ K  L    + +    E         + +   +   +    RKG  + ++   +   
Sbjct: 916  IELMKEKLNTPYINVSSLYE----YVNQTVNIVVQLQRVKNITDRKGDEMCFIEGFDETG 971

Query: 1026 EYEANFF 1032
              +   F
Sbjct: 972  SVDGVVF 978


>gi|300778928|ref|ZP_07088786.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
 gi|300504438|gb|EFK35578.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
          Length = 1555

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/1033 (31%), Positives = 525/1033 (50%), Gaps = 78/1033 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----------- 59
            + +   HS +S L    S+N+++ K + +  PA+ + D  N+  A +F            
Sbjct: 248  YFNFDNHSVFSTLTATSSINDLIKKASDENFPAVGMVDLGNMMGAFKFVSAVEGANADRA 307

Query: 60   ----------QKACAAGIQ----------PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
                      Q+A   G +           I     +  + D  +     K        +
Sbjct: 308  KKHKEYLAKKQEAEENGTEFNEEEPVSEPLIPVVGCEFYISDRYEQKQFTKDDPDRRTQV 367

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            VLL     GY+ L +L S  +L        R+    + +   EG+I LT G  G I  A 
Sbjct: 368  VLLAKDFNGYKNLAKLSSIGFLKGFYFGVPRVSRELIAQY-KEGVIALTSGIMGDIPDAI 426

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSL 218
                 Q  E+    +K  F D  YV +Q H+  +    ++ ++ LA  + + ++A N + 
Sbjct: 427  LNTGEQKGEELFKWWKDTFEDDFYVQIQNHKLPEEEHLNEVLLYLADKYNVKILAQNETF 486

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            + +++D    D++  +     ++          R   T ++Y+K+  E+   F   P+A 
Sbjct: 487  YTNKDDANIQDIVSCIKDGEKLTTPIGKGFGKRRGLATGEYYIKSSDEIKEAFLAYPDAF 546

Query: 272  ENTVEIARRCSFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVRL 323
            +   E   +          +LP+F         E E D  ++ E   L +    G + R 
Sbjct: 547  DAYEEFTAKFKPYTLKRDVLLPKFDIPEEFIHAEDEVDGGKRGEMAYLTHLTYEGAKNRY 606

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
             +  I       + ++RLDFEL VIA   + GYFLIV DF   A+K  + VGPGRGS AG
Sbjct: 607  GEEGI-----TDEIKERLDFELEVIANTGYPGYFLIVQDFCNEARKMGVWVGPGRGSAAG 661

Query: 384  SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            S  AY + IT++DP+++ LLFERFLNP+R+SMPD DIDF  + RD VI++V  KYG  +V
Sbjct: 662  SAVAYCIGITNVDPIKYDLLFERFLNPERVSMPDIDIDFDDEGRDRVIKWVIEKYGQSQV 721

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR- 502
            AQIIT+  L  K+A++D GR L +P    + + KLIP+ P   +  +A+A   + +    
Sbjct: 722  AQIITYSVLGGKSAIKDAGRVLDVPIPDTNNIAKLIPSTPGMNI-AKALAKYDKLKPEEQ 780

Query: 503  ---------LADPSVDR--LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                     L  P   R  +L  ++K+EG  R+   HA G++I    +S LVP+    + 
Sbjct: 781  MLVDEMRYVLESPDDSRHGVLASAKKMEGCIRNTGIHACGVIITPEDVSNLVPVTIAAKD 840

Query: 552  -DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             D+ V+QF+    E AGL+K DFLGL+TLT+++ +L  +  R  V +D  LIP DD +TY
Sbjct: 841  ADILVSQFDNSVAESAGLLKMDFLGLRTLTIIKDALKLVKARHGVDIDPDLIPLDDAKTY 900

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T+GIFQ ES GM++ +  ++P    D+IA+ +LYRPGPI  I  + NRK+G E
Sbjct: 901  QLFKEGRTVGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPIKYIPNFINRKHGIE 960

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +IV   P  +  LKET G+ +YQEQVM ++Q L+ ++  EAD LR+AMGKK  + ++K  
Sbjct: 961  EIVYDLPETEEYLKETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKQIDVLNKMY 1020

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI G  KN +++     I+     FA+Y FNKSH+  YA I+YQTA++K +YP E++A
Sbjct: 1021 PKFIEGGRKNNLNEERLEKIWNDWKAFAEYAFNKSHSTCYAFIAYQTAYLKANYPAEYMA 1080

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTT 848
            + M+  ++N + I  F +D +   + ++ P VN     F V +   I + L AIKG+G  
Sbjct: 1081 SVMSNNINNTDSITMFMEDCKSMGVDVLGPDVNESQYKFSVNEKGQIRFGLGAIKGIGEG 1140

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ---- 903
             +  I     +  F ++ DF  R+   ++N+RV ESLV AGA D    + R Q       
Sbjct: 1141 PSEAITRERENGRFKNIYDFFERILPSQMNKRVAESLVLAGAFDELDSFHRGQYFDIDMA 1200

Query: 904  ---SLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQRVL 959
               +L+ + +Y Q  ++++     ++FA   +    ++  L       +  +   E+ ++
Sbjct: 1201 GKTNLERLIRYGQSFQESKNEMEHSLFADFAEEVQIEQPKLAPCPEWPNMHKLNKEKEII 1260

Query: 960  GFYFSGHPLDVYK 972
            GFY S HPLD +K
Sbjct: 1261 GFYLSAHPLDEFK 1273



 Score = 44.6 bits (104), Expect = 0.093,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 992  GNNIRLAAMVVSKQQK-KTRKGSRIGWVTFSEPAKEY 1027
            G    +A ++   + +   R G ++ +VT  + +  Y
Sbjct: 1389 GKEYTVAGLITEYRVQDGFRSGEKVAFVTLEDYSGSY 1425


>gi|260101642|ref|ZP_05751879.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            helveticus DSM 20075]
 gi|260084543|gb|EEW68663.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            helveticus DSM 20075]
          Length = 1041

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/1024 (32%), Positives = 535/1024 (52%), Gaps = 44/1024 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    ++++++        A+ + D N  +  + F + A  AGI+P++G 
Sbjct: 12   LQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLADVNVTYGLVNFYELAKKAGIKPLLGM 71

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQGKQSVRIC 132
            Q          +   G         ++    T  GY  L+ L S + +L D G+ +  + 
Sbjct: 72   Q----------LRLNGLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLT 121

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +   + L+++   +   +    F  + Q+    +   K+L  D LY+ +  +   
Sbjct: 122  LKDLSKYLADLLLIVPANTKSELLSL-FETNKQLGSDLIRDLKELTSD-LYLGVYANPSM 179

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPRVTPD 251
              Y +  V  L+   +LPL+AT +S +L+  D      L A+A    +       +    
Sbjct: 180  QNYID-YVRSLSKQFDLPLLATEDSEYLNPHDQFLQKTLRAIATGDKIQDALPLAKQEGS 238

Query: 252  HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HYL    +++  +   DL +A+ NT ++A +C+  +    P+LP++ +K+        E 
Sbjct: 239  HYLVEAEQLLQRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKF----VTSEE 294

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L   A  GL+ R  Q  I       +Y++RL++EL VI +M F  YFLIV D I +  +
Sbjct: 295  YLHYLAQTGLQQRFGQNKI-----PAEYQKRLNYELRVINQMGFDDYFLIVWDVINYCHR 349

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS  GS+ +Y+L IT++DP+ ++LLFERFLNP R  MPD D+D    +RD 
Sbjct: 350  VQITTGPGRGSACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRDT 409

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   ++ +    IP         
Sbjct: 410  VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWVDAIPYSKGKITLK 469

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +A       R    A P    L + +  LEGL RH S HAAG+VI D  ++ +  +    
Sbjct: 470  EAYQQSRELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGLQAGP 529

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ   K++E  GL+K DFLGL+ LT+L   L+ + Q+G+K+D + IP +D +T 
Sbjct: 530  L-GIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLIRQQGIKIDPNQIPLNDAQTL 588

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  +FQ ES G+RQ L  + PD  ED++A+ +LYRPGP+ NI  +  RKNG+E
Sbjct: 589  QLFQQGKTDAVFQFESGGIRQVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVRRKNGQE 648

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++K
Sbjct: 649  AVRYPDPSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQEK 708

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI+G  K G +K +A  +++ + +FA+YGFN+SHA AY  I+Y  A++K HYP  F  
Sbjct: 709  GKFIAGTIKQGHTKAVAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPAAFYT 768

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +        K + +   A++ NI+I+PP +N   +++ + + +I   L AIKG+    
Sbjct: 769  AMLNSAAGA--KAQDYIMQAQEANIKILPPDINHSSLEYALKNKQILVGLKAIKGLRVDF 826

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            AR I  A   KP+ SL DF  R+D K L    +++L+ AGA D    +R +LL + D I 
Sbjct: 827  AREI--ADNTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNCDEII 884

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               Q              +   G       L+       + +   E++VLGF  +  PL 
Sbjct: 885  ANVQLT------GQNISLSEILGNA----PLKPADEPTGAEKAAMEEKVLGFSTTTSPLI 934

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K   +   +      G  +     ++  +Q +T+ G  + + +F++ + E E 
Sbjct: 935  AVQKFAQKFNSRPLNQFQLNESGVGV---GKLIRFKQIRTKNGKNMAFASFADTSGEQEV 991

Query: 1030 NFFP 1033
              FP
Sbjct: 992  VIFP 995


>gi|323466669|gb|ADX70356.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            helveticus H10]
          Length = 1041

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/1024 (32%), Positives = 536/1024 (52%), Gaps = 44/1024 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    ++++++        A+ + D N  +  + F + A  AGI+P++G 
Sbjct: 12   LQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLADVNVTYGLVNFYELAKKAGIKPLLGM 71

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQGKQSVRIC 132
            Q          +   G         ++    T  GY  L+ L S + +L D G+ +  + 
Sbjct: 72   Q----------LRLNGLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLT 121

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +   + L+++   +   +    F  + Q+    +   K+L  D LY+ +  +   
Sbjct: 122  LKDLSKYLADLLLIVPANTKSELLSL-FETNKQLGSDLIRDLKELTSD-LYLGVYANPSM 179

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPRVTPD 251
              Y +  V  L+   +LPL+AT +S +L+  D      L A+A    +       +    
Sbjct: 180  QNYID-YVRSLSKQFDLPLLATEDSEYLNPHDQFLQKTLRAIATGDKIQDALPLAKQEGS 238

Query: 252  HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HYL    +++  +   DL +A+ NT ++A +C+  +    P+LP++ +K+        E 
Sbjct: 239  HYLVEAEQLLQRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKF----ATSEE 294

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L   A  GL+ R  Q  I       +Y++RL++EL VI +M F  YFLIV D I +  +
Sbjct: 295  YLHYLAQTGLQQRFGQNKI-----PAEYQKRLNYELRVINQMGFDDYFLIVWDVINYCHR 349

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS  GS+ +Y+L IT++DP+ ++LLFERFLNP R  MPD D+D    +RD 
Sbjct: 350  VQITTGPGRGSACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRDT 409

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   ++ +    IP         
Sbjct: 410  VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWADAIPYSKGKITLK 469

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +A       R    A P    L + +  LEGL RH S HAAG+VI D  ++ +  +    
Sbjct: 470  EAYQQSRELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGLQAGP 529

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ   K++E  GL+K DFLGL+ LT+L   L+ + Q+G+K+D + IP +D +T 
Sbjct: 530  L-GIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLIRQQGIKIDPNQIPLNDAQTL 588

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  +FQ ES G+RQ L  + PD  ED++A+ ++YRPGP+ NI  +  RKNG+E
Sbjct: 589  QLFQQGKTDAVFQFESVGIRQVLRKLHPDNFEDLVAVNAIYRPGPMQNIDAFVRRKNGQE 648

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++K
Sbjct: 649  AVRYPDPSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQEK 708

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI+   K G +K IA  +++ + +FA+YGFN+SHA AY  I+Y  A++K HYP  F  
Sbjct: 709  GKFIADTIKQGHTKAIAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPAAFYT 768

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +        K + +   A++ NI+I+PP +N   +++ + + +I   L AIKG+    
Sbjct: 769  AMLNSAAGA--KAQDYIMQAQEANIKILPPDINHSSLEYTLKNKQILVGLKAIKGLRVDF 826

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            AR I  A   KP+ SL DF  R+D K L    +++L+ AGA D    +R +LL + D I 
Sbjct: 827  AREI--ADNTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNCDEII 884

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               Q   +N      ++             L+       + +   E++VLGF  +  PL 
Sbjct: 885  ANVQLTGRN-----ISL-----SEILGNAPLKPADEPTGAEKAAMEEKVLGFSTTTSPLI 934

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K   +   +      G  +     ++  +Q +T+ G  + + +F++ + E E 
Sbjct: 935  AVQKFAQKFNSRPLNQFQLNESGVGV---GKLIRFKQIRTKNGKNMAFASFADTSGEQEV 991

Query: 1030 NFFP 1033
              FP
Sbjct: 992  VIFP 995


>gi|327183463|gb|AEA31910.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL 1118]
          Length = 1035

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/1024 (32%), Positives = 532/1024 (51%), Gaps = 44/1024 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    + +++         A+ + D N  +  + F + A   GI+P++G 
Sbjct: 6    LQNLSSFTLLDSPTKVADLIKTAKEKGYSAVGLADINVTYGLVNFYEIAKKEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
            Q+ ++          G         +++   T  GY  L+ L S + LL + G+    + 
Sbjct: 66   QIRLN----------GLIDSTQKYDLLVFAKTNAGYHNLLRLSSAINLLTENGQNDKILT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +   + L+++   +   +    F  + Q+    L   KK+  D  Y+ +      
Sbjct: 116  LKELTKYLEDLLVIIPANTRSEL-VYLFETNQQLGSDYLRDLKKIVSD-FYLGVYA-AEN 172

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPRVTPD 251
            D+     V  L+   +LPLVA  +S +L   D      L A+     +       +    
Sbjct: 173  DQDYLDYVRSLSKQFDLPLVAVEDSEYLRPRDQFLQKTLRAIRSGQKMQDMVPLAKQDGS 232

Query: 252  HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HY+ +  +M+  +   DL +A+ NT +IA +C+  +    P+LP++ + +        E 
Sbjct: 233  HYMVDAEQMLERYHRFDLDDAVNNTAKIAEKCNAEVIFQKPVLPKYHQNKF----LTSEE 288

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L   A  GL+ R  Q  I       +Y++RL++EL +I +M F  YFLIV D I +  +
Sbjct: 289  YLHYLAQTGLQARFGQEKI-----PAEYQKRLNYELRIINQMGFDDYFLIVWDVINYCHR 343

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS  GS+ +Y+L IT++DPL++ LLFERFLNP R  MPD D+D     RD 
Sbjct: 344  VKITTGPGRGSACGSLVSYSLRITEVDPLKYHLLFERFLNPARHEMPDIDLDIPDIHRDT 403

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +  ++V++  + IP         
Sbjct: 404  VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMAEVNKWARAIPFSKGKMTLK 463

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            QA  +    R    A      L   +  LEGL RH S HAAG+VI D  ++ +  +    
Sbjct: 464  QAYEESRELRLLVDATEENKLLFRTAMALEGLPRHYSIHAAGLVISDDSIAGISGLQAGP 523

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ   K++E  GL+K DFLGL+ LT+L   LD +  +GVK+D + IP +D +T 
Sbjct: 524  L-GIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILDLVRSQGVKIDPNKIPLNDAKTL 582

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  IFQ ES G+R+ L  + PD  ED++A+ +LYRPGP+ NI  +  RKNGKE
Sbjct: 583  ELFQQGKTDAIFQFESEGIRRVLRQLHPDNFEDLVAVNALYRPGPMQNIDTFVARKNGKE 642

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++K
Sbjct: 643  PVRYPDPSLKQILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQEK 702

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI+G  KNG SK +   ++  + +FA+YGFN+SHA AY  I++  A++K HYP  F  
Sbjct: 703  SKFIAGVVKNGHSKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFYT 762

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +        K +++   A++ NI+++ P +N   +++ + +N I   L AIKG+    
Sbjct: 763  AMLNSSTSA--KAQQYVMQAQEANIRVLTPDINHSQLEYTLQNNNILVGLKAIKGLRVDF 820

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A+ I  A+  KP+ SL DF  R+DSK L    +E+L+ AGA D    +R +LL +  +I 
Sbjct: 821  AKEI--AANTKPYKSLSDFLRRIDSKFLQIDAIEALIMAGAFDQIEDNRNELLANCKDII 878

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               Q   +N      ++             L+   +  +  + E E++VLGF  +  PL 
Sbjct: 879  ANVQLTGQN-----ISL-----SEILGDAPLKPAEIPTNGEKAEMEEKVLGFATTTTPLV 928

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K       +      G  +     ++S ++ +T+    + +  F++ + + E 
Sbjct: 929  AVQKYAQKFNALPLNQFQFNESGIGV---GKLMSLKRIRTKNDKTMAFAGFADSSSQQEV 985

Query: 1030 NFFP 1033
              FP
Sbjct: 986  IIFP 989


>gi|257077930|ref|ZP_05572291.1| DNA polymerase III alpha subunit [Enterococcus faecalis JH1]
 gi|256985960|gb|EEU73262.1| DNA polymerase III alpha subunit [Enterococcus faecalis JH1]
          Length = 1109

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/1034 (30%), Positives = 516/1034 (49%), Gaps = 60/1034 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +    +            ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEKEGHSE-----------LLLFAKNLKGYQQLMQLSSSKMTTEGPFYLA 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
                S L +     L  +T  + G + +  FF   Q A          F  + L+V    
Sbjct: 111  E-HQSLLSD-----LFAVTLSAKGEVAQ-TFFEDEQQAVHAFQQLASYFDPQSLFVEHSF 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKD 244
                ++ R   +       +LP VA      L+ E+  A  VL ++  +          +
Sbjct: 164  --SMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQTPE 221

Query: 245  RPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               +      +    +M+ I     E ++NT+++A  C   + +H  +LP F   +    
Sbjct: 222  IEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDN--- 276

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +   + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D 
Sbjct: 277  -QTAGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDV 328

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D  
Sbjct: 329  MDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIP 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN  
Sbjct: 389  DNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKL 448

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  ++  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LV
Sbjct: 449  KITLE-ESYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLV 507

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+      ++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP
Sbjct: 508  PLQLGSN-EILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIP 566

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+ 
Sbjct: 567  LDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFI 626

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K
Sbjct: 627  RRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKK 686

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K H
Sbjct: 687  DVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVH 746

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
            YP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  ++
Sbjct: 747  YPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSS 806

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R Q
Sbjct: 807  LKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQ 866

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L   L++  +         +    ++    K    +              ++      LG
Sbjct: 867  LAVGLESNIQSILL-----SGGSMDLLETLKPKEEEIADYPLEERLEQEEQY------LG 915

Query: 961  FYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y SGHP + +K   L K      +     +     +L   V + +  +T+KG ++ +V 
Sbjct: 916  VYLSGHPTEEFKKTRLAKQT----QLVHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVD 971

Query: 1020 FSEPAKEYEANFFP 1033
              +         FP
Sbjct: 972  GDDTTGSISLTLFP 985


>gi|111610197|gb|ABH11587.1| DNA-directed DNA polymerase alpha chain [Lactobacillus helveticus
            CNRZ32]
 gi|328467460|gb|EGF38535.1| DNA polymerase III, alpha subunit [Lactobacillus helveticus MTCC
            5463]
          Length = 1035

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/1024 (32%), Positives = 536/1024 (52%), Gaps = 44/1024 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    ++++++        A+ ++D N  +  + F + A  AGI+P++G 
Sbjct: 6    LQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLSDVNVTYGLVNFYELAKKAGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQGKQSVRIC 132
            Q          +   G         ++    T  GY  L+ L S + +L D G+ +  + 
Sbjct: 66   Q----------LRLNGLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +   + L+++   +   +    F  + Q+    +   K+L  D LY+ +  +   
Sbjct: 116  LKDLSKYLADLLLIVPANTKSELLSL-FETNKQLGSDLIRDLKELTSD-LYLGVYANPSM 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPRVTPD 251
              Y +  V  L+   +LPL+AT +S +L+  D      L A+A    +       +    
Sbjct: 174  QNYID-YVRSLSKQFDLPLLATEDSEYLNPHDQFLQKTLRAIATGDKIQDALPLAKQEGS 232

Query: 252  HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HYL    +++  +   DL +A+ NT ++A +C+  +    P+LP++ +K+        E 
Sbjct: 233  HYLVEAEQLLQRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKF----VTSEE 288

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L   A  GL+ R  Q  I       +Y++RL++EL VI +M F  YFLIV D I +  +
Sbjct: 289  YLHYLAQTGLQQRFGQNKI-----PAEYQKRLNYELRVINQMGFDDYFLIVWDVINYCHR 343

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS  GS+ +Y+L IT++DP+ ++LLFERFLNP R  MPD D+D    +RD 
Sbjct: 344  VQITTGPGRGSACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRDT 403

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   ++ +    IP         
Sbjct: 404  VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWVDAIPYSKGKITLK 463

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +A       R    A P    L + +  LEGL RH S HAAG+VI D  ++ +  +    
Sbjct: 464  EAYQQSRELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGLQAGP 523

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ   K++E  GL+K DFLGL+ LT+L   L+ + Q+G+K+D + IP +D +T 
Sbjct: 524  L-GIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLIRQQGIKIDPNQIPLNDAQTL 582

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  +FQ ES G+RQ L  + PD  ED++A+ +LYRPGP+ NI  +  RKNG+E
Sbjct: 583  QLFQQGKTDAVFQFESGGIRQVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVRRKNGQE 642

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++K
Sbjct: 643  AVRYPDPSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQEK 702

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI+G  K G +K +A  +++ + +FA+YGFN+SHA AY  I+Y  A++K HYP  F  
Sbjct: 703  GKFIAGTIKQGHTKAVAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPAAFYT 762

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +        K + +   A++ NI+I+PP +N   +++ + + +I   L AIKG+    
Sbjct: 763  AMLNSAAGA--KAQDYIMQAQEANIKILPPDINHSSLEYALKNKQILVGLKAIKGLRVDF 820

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            AR I  A   KP+ SL DF  R+D K L    +++L+ AGA D    +R +LL + D I 
Sbjct: 821  AREI--ADNTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNCDEII 878

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               Q              +   G       L+       + +   E++VLGF  +  PL 
Sbjct: 879  ANVQLT------GQNISLSEILGNA----PLKPADEPTGAEKAAMEEKVLGFSTTTSPLI 928

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K   +   +      G  +     ++  +Q +T+ G  + + +F++ + E E 
Sbjct: 929  AVQKFAQKFNSRPLNQFQLNESGVGV---GKLIRFKQIRTKNGKNMAFASFADTSGEQEV 985

Query: 1030 NFFP 1033
              FP
Sbjct: 986  VIFP 989


>gi|296390977|ref|ZP_06880452.1| error-prone DNA polymerase [Pseudomonas aeruginosa PAb1]
          Length = 1024

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/1035 (27%), Positives = 465/1035 (44%), Gaps = 82/1035 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q A    +Q 
Sbjct: 3    AYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQAAREHQVQL 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G                 +      P +VLL    EGYQ L  L++R       K   
Sbjct: 63   IVGS----------------EIRLEQGPKLVLLAEDLEGYQNLCRLITRGR-RQADKGHY 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    LQ+     L +      G               +++   ++ F  RL++ ++ H
Sbjct: 106  RLLREDLQQPLAGLLAIWLPNDHGD--------------EQVAWLRERFPQRLWLGVELH 151

Query: 190  RG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            RG  D  R  +++ LA    LP VA  +    +       D + A+ +   VS+      
Sbjct: 152  RGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLPVSEAGAYLF 211

Query: 249  -TPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L+    +  I+   P+AL   T++IA RC F L+      PR +     D    
Sbjct: 212  PNGERHLRTLEALQGIY---PQALLAETLKIAERCRFDLEQLKYQYPRELVPAGHD---- 264

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR+    G+  R   GA AK       R++++ EL +IA + +  YFL V D + +
Sbjct: 265  PASWLRHLTEQGIARRWPNGASAK------VRKQIERELELIAELGYESYFLTVQDIVAF 318

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I +  GRGS A S   +AL IT++DP R +LLFERFL+ +R   PD D+DF  +R
Sbjct: 319  ARSREI-LCQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPDIDVDFEHER 377

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L           
Sbjct: 378  REEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLANCCGRWSDQA 437

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             S + + +           P + R+L ++ +L G  RH S H  G VI ++PL  LVP+ 
Sbjct: 438  PSAERLEE----AGFDPQSPILRRVLALTGELIGFPRHLSQHPGGFVISEQPLDTLVPVE 493

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--QRGVKVDLSLIPFD 604
                ++  V Q++   ++  GL+K D L L  L+ L++S D +   + G ++ ++ IP +
Sbjct: 494  NASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKRLSIASIPSE 553

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y 
Sbjct: 554  DPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQGDMVHPYL 613

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EAD LRR+M   K 
Sbjct: 614  RRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADELRRSMAAWKR 673

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               ++  +ER   G   NG     A  IFE +  F  YGF +SHAA++A+++Y ++W+K 
Sbjct: 674  HGGLEHHRERLTRGMLANGYEADFAARIFEQIKGFGSYGFPESHAASFALLTYASSWLKR 733

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIY 836
            H P  F  A +           +  QDAR+  +Q  P  V     D  +         I 
Sbjct: 734  HEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLESFGQAQPAIR 793

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  I+G     AR I +    +PF  + D   R      + R LE L  AGAL     
Sbjct: 794  LGLRMIRGFREEDARRIEQVREAQPFLDVHDLGRRARL---DARALELLADAGALRGLAG 850

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R +   ++ ++                 +FA         ++L    + +      ++ 
Sbjct: 851  HRHKARWAVASV------------EPQLPLFAEGTVIEESTVSLP---LPSRGEELLSDY 895

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             +LG     HPL + +  L+    +   E      G  IR+A +VV +Q+ +T  G  I 
Sbjct: 896  ALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVVGRQRPQTASG--IT 953

Query: 1017 WVTFSEPAKEYEANF 1031
            ++T  +         
Sbjct: 954  FITLEDEFGMVNVVV 968


>gi|209515641|ref|ZP_03264505.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160]
 gi|209503877|gb|EEA03869.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160]
          Length = 1049

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/1037 (25%), Positives = 454/1037 (43%), Gaps = 62/1037 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S+++ L GA     +  + A     A+AITD  +L   +     A  A + 
Sbjct: 9    PAYAELFCFSNFTFLRGASHAEELAGRAAQLGYSALAITDECSLAGVVRAHVAAKEAKLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+            ++ N   +P      ++LL     GY  L EL++   +    K  
Sbjct: 69   FIV--------GSYFRLVNADGSP---AFGLILLARNRNGYGNLSELITLARMR-APKGE 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L         +L       I    F  S    + ++      F  R +V L  
Sbjct: 117  YRLTPQDLSRPEKAYRHLLGMPDCLAILVPDFPASEDALDAQVEWLDATFTGRAWVGLVL 176

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H R  D      V  +A + ++P+VA    +          D + A+     V +     
Sbjct: 177  HQRAMDDMHRGAVEFVARSRDVPVVALGEVVMHVRSRKPLQDTMTAIRVGKPVHECGYDL 236

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  + +++    +AL  T++I  RC+F L       P     E       
Sbjct: 237  APNAEQHLRSRLRLANLYPQ--DALAATLDITSRCTFSLDELRYEYP----DELVPAGHT 290

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR +   G + R   G           +Q+++ EL +IA +++  YFL V D +++
Sbjct: 291  PASYLRQETYIGAQRRFPSGI------PHHVQQQIEHELELIADLQYEPYFLTVYDIVRF 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A S   Y L +T++DP R ++LFERF++ +R   PD D+DF   R
Sbjct: 345  ARSQHI-LCQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEPPDIDVDFEHQR 403

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG +R A      + + + ALR+ G+AL +    VD + K         
Sbjct: 404  REEVIQYIYRKYGRDRAAIAAAVSTYRPRGALRETGKALGVDPLIVDAVAKSHHWFDGRQ 463

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L   A+           P +    +++ +L    RH S H+ G VI    L++LVP+ 
Sbjct: 464  DLLARFAESG----LDPDKPLIQAWAKLASQLLNFPRHLSQHSGGFVISRGKLTRLVPVE 519

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                 D  V +++   +E  GL+K D L L  L+ ++++LD +  QRG + ++  IP +D
Sbjct: 520  NAAMVDRSVIEWDKDDLESLGLLKVDVLALGMLSAIRRTLDLVSEQRGERFEMQDIPAED 579

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
              TY +++   T+G+FQ+ES      L  M+P    D++  V++ RPGPI       Y  
Sbjct: 580  EATYAMISAADTVGVFQIESRAQMSMLPRMRPTEFYDLVIEVAIVRPGPIQGGAVHPYLQ 639

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+ G E +      +   L  T GV I+QEQVMQ+A L +G++  EAD LRRAM   K K
Sbjct: 640  RRQGFEPVTYPSDALKTALGRTLGVPIFQEQVMQVAILAAGFTAGEADQLRRAMAAWKRK 699

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              ++K  +R + G  + G ++  A  IFE +  F +YGF +SHAA++A++ Y ++W+K H
Sbjct: 700  GGLEKYYDRIVLGMQERGYTQAFAEAIFEQIKGFGEYGFPESHAASFALLVYASSWLKCH 759

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------RIY 836
             P  FLAA +  +        +  QDA++  ++++P  V     D  +  N       + 
Sbjct: 760  EPEAFLAAMLNSQPMGFYSPSQLVQDAKRHGVKVLPVDVTVSGWDSSLEPNAGTPRPAVR 819

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L+ ++G+    A  I  A A +PF S+ D   R      +R+ L +L  A AL     
Sbjct: 820  LGLSLLRGMKDGAAERIENARAVRPFASVNDLARRAQL---DRKDLHALAQANALTSLAG 876

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R + L    ++               +                 +    + +     + 
Sbjct: 877  NRREALWQ--SVVAVPDKDMLAAAAAQD--------------ETPELGAPSEADDIVADY 920

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            R LG   + HPL++ +P L    +           G   R   +V  +Q+  T KG  + 
Sbjct: 921  RSLGLTLNRHPLELLRPQLLANRLMPASTLRTYRDGRLARACGLVTVRQRPGTAKG--VV 978

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +VT  +         +P
Sbjct: 979  FVTLEDETGNVNVIIWP 995


>gi|169348422|ref|ZP_02866360.1| hypothetical protein CLOSPI_00137 [Clostridium spiroforme DSM 1552]
 gi|169293891|gb|EDS76024.1| hypothetical protein CLOSPI_00137 [Clostridium spiroforme DSM 1552]
          Length = 1017

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1024 (35%), Positives = 557/1024 (54%), Gaps = 54/1024 (5%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQV+S+YS     + + ++  K +     A+A+TD +N+F A+EF++      I+PI G
Sbjct: 4    HLQVYSAYSFQNSTILIEDLCKKASDLHYEALALTDKDNMFGAMEFTKCCAKYRIKPIYG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             +  +++                +  ++LL     GY  L+++ S + L D       I 
Sbjct: 64   LEASVEIDHE-------------IYPLILLAKNTSGYFSLVKITSDISLSDN----KAIK 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
               L +   E L +L+G   G I+R         A K L  FK  F D  YV LQ H   
Sbjct: 107  FDDLVK-HQEHLFVLSGCKEGIIERLILKELDSEALKYLKLFKNSF-DNFYVCLQNHNLA 164

Query: 193  DRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             +++   ++V L     +P+  +N   +L  ++    ++L A +    +   +   VT  
Sbjct: 165  MQHKVNERLVALTLLENIPICVSNEVRYLESKEAYTLELLQAFSKGQTL-DINHEPVTDQ 223

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             YLK+  EM SIF    + +ENT  I   C+  + +H   LP++   +  +      + L
Sbjct: 224  LYLKSSYEMESIFD--KKYIENTDYIINLCNASIPLHHMHLPKYPVPKNGNAS----DYL 277

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            +     GL+ R     I        Y QRL  EL+VI +M F  YFLIV D++++AK N 
Sbjct: 278  KQLCSVGLKKRFKNQKI-----NTVYLQRLKKELDVIKKMGFDDYFLIVFDYVRYAKINK 332

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I VGPGRGS AGS+ AY L IT+IDPL+++L+FERFLN +R+SMPD DIDF  DRRDE++
Sbjct: 333  ILVGPGRGSAAGSLVAYVLGITNIDPLKYNLVFERFLNEERVSMPDIDIDFQDDRRDEIV 392

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             YV NKYG E V QI+TF +   K A++D+G+ L +   +++ L K IP  P +  S + 
Sbjct: 393  EYVTNKYGQEHVGQIVTFSTYGPKVAIKDLGKVLGITLPRLELLAKNIPTGPKNRKSAKE 452

Query: 492  IADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            + + S  F+     D ++ R++     +E L R+ STHAAG+V+ +  L+Q+VP+ R   
Sbjct: 453  VYETSYNFQSMVNRDLALRRIMPSVFIVEKLPRNISTHAAGVVLSNDRLNQVVPLTRGPN 512

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
            +   VTQ++  +IE  GL+K DFLGLK LT++   L  +    G K++++ I  +D +T+
Sbjct: 513  NG-IVTQYSKDYIEDVGLLKMDFLGLKNLTIIDYILKDIEKNDGRKININEIELNDKKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L++   T GIFQLES GM+  L  MQ +C++D+IA ++L+RPGP+ NI  Y  RK G+E
Sbjct: 572  QLISRGDTFGIFQLESPGMKNLLIKMQCNCLDDLIAAIALFRPGPMANIPAYIARKKGEE 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +      + P+L  T G+IIYQEQ+MQ+AQ ++G+SL++AD+LR+AM  KI   M   K
Sbjct: 632  PVTYPLDCLKPILSSTYGIIIYQEQIMQVAQRVAGFSLAKADILRKAMSDKIVSLMASMK 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FISG   NG S++ AV IFEL+ KFA+YGFNK+H+ AY  ++Y  A++K +YP+EF +
Sbjct: 692  TEFISGGIANGFSESEAVGIFELIEKFANYGFNKAHSVAYGYVAYWLAYLKANYPLEFFS 751

Query: 790  ASMTLEM-DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A ++ E   +  KI    Q+ +++ ++I+PPS+N     FKV D  I YSL AIK VG  
Sbjct: 752  ALLSNEQSSDSNKIN-CIQEGKKYGVKILPPSINYSTDRFKVEDGNIRYSLLAIKNVGYA 810

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
              + I++      F  + DF SR++S KLN ++++SL+ AGA D F  +R  +  +L +I
Sbjct: 811  GYQAIIQEREKGLFKDVFDFISRMESSKLNSKMIDSLIMAGAFDEFELNRSTIKYNLSHI 870

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +YAQ                      D+  +     +N     E E+ VLG Y S HP+
Sbjct: 871  MEYAQLKN---------------MIGIDEPPILTIVKDNRMKILEEEKLVLGVYLSMHPI 915

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             + K  L  + I    E    I    + +   +   +    +KG  + +V   +   E +
Sbjct: 916  ALIKQNLN-LKIISVSELHNNID-KYVTIVMAISRVKAIVDKKGQEMCFVDGYDETGEID 973

Query: 1029 ANFF 1032
               F
Sbjct: 974  GVVF 977


>gi|81428645|ref|YP_395645.1| DNA-directed DNA polymerase III, alpha subunit [Lactobacillus sakei
            subsp. sakei 23K]
 gi|78610287|emb|CAI55336.1| DNA-directed DNA polymerase III, alpha subunit [Lactobacillus sakei
            subsp. sakei 23K]
          Length = 1110

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1028 (32%), Positives = 538/1028 (52%), Gaps = 48/1028 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV LQV S+Y+LLE    + +++    A    ++A+TD N ++  ++F + A AA I+P
Sbjct: 2    AFVQLQVKSTYTLLESTTKITDLVTAAKARGYQSLALTDKNVVYGLVDFYKAAKAADIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++           + +   G         ++LL     GYQ ++++ +++    +     
Sbjct: 62   LL----------GITIEVGGLIQTDERFPLILLAKNLTGYQNILKISTKIMTQSEL---- 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-FGDRLYVNLQR 188
             +    +Q +  + L+++T    G + R    N +  A+  +   K +   D LY+ +  
Sbjct: 108  -VPFEAVQSLLQQ-LVVITPSQDGELVRLLLQNDATAAQTYIERLKAVVDADSLYLGISA 165

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +   R R   + QL+    +PLVA  +  +L  ED  A  VL  +   T V+ +  P+ 
Sbjct: 166  KQAASRQRVP-LGQLSQQTAVPLVALGDVRYLEPEDAFAVQVLQHIKAGTQVNLQT-PQA 223

Query: 249  TPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               ++L++  +  + F    L EA+ NT +IA +C   L      LP+F         + 
Sbjct: 224  PGGYFLEDVQQATAAFEALQLAEAVANTQKIAAQCQVDLSFKRAQLPQFETPAG----QS 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+ ++ AGL+ R     I      + Y+ RLD+EL VI  M F+ YFLIVAD +Q+
Sbjct: 280  AATYLKQQSQAGLQARFKTQPI-----PETYQTRLDYELQVINEMGFADYFLIVADVMQY 334

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A + NI  GPGRGS AG++ AYAL ITD+DP+R+ LLFERFLNP+R +MPD D+D   +R
Sbjct: 335  AHQQNIMTGPGRGSAAGALVAYALRITDVDPIRYQLLFERFLNPNRANMPDIDLDIPDNR 394

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEV+ YV  KYG   +AQIITFG+L AK AL+DVGR   +   ++    K IPN     
Sbjct: 395  RDEVLDYVYQKYGQNHMAQIITFGTLAAKMALKDVGRVFGLSQFEMSAWSKAIPNVLKIT 454

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A      F+           L E +Q++EGL RH STHAAGIV+   PL++ V + 
Sbjct: 455  LQ-EAYDQSQAFKNLVADSQQNRLLFETAQRIEGLPRHYSTHAAGIVLSQAPLTETVALQ 513

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                 ++ +TQ  M  +E+ GL+K DFLGL+ L +L   +  +  Q G   +   IP DD
Sbjct: 514  -SGGDEIELTQLPMGNVEELGLLKIDFLGLRNLGILANIVKLVSQQTGQPFNPQNIPLDD 572

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T GIFQ ES+G++  L  ++P   EDI+A  +LYRPGP++NI  + +RK
Sbjct: 573  PATLALFQQGDTNGIFQFESTGIKNVLRRLKPTSFEDIVATDALYRPGPMENIDTFIDRK 632

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GK  +      +  +L+ T G+++YQEQVMQ A  + G++L EAD+LRRAM KK K  +
Sbjct: 633  SGKVPVTYPDDSLAEILQPTYGILVYQEQVMQAASKMGGFTLGEADILRRAMSKKKKAVI 692

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D  + +FI GA   G ++  A  +++ + +FA+YGFN+SHA AY+ I++  A++K H P 
Sbjct: 693  DASRTKFIEGALALGHTEQAATTVYDYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHQPE 752

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F AA +   ++   K K +  +A++  + ++PP +N     FKV D  I + L +IKG+
Sbjct: 753  AFFAAVLNAVLNQGTKTKTYLAEAKKRQLSVLPPDINLSQRYFKVTDAGIIFGLYSIKGL 812

Query: 846  GTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
                   I+ E     PF S+  F  R+D+K L +  L +L+++GA D F  +R  LL +
Sbjct: 813  RRDFVAAILDEHQTGGPFKSVLQFLQRLDAKYLKKEALVALIYSGAFDQFNPNRNALLMN 872

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            LD++    +    N      ++F            L        + R + E   LG Y S
Sbjct: 873  LDDLLDSVKLAGDN-----MSLFEILAPKEKTVSNL------TLTERLDKEAEYLGAYLS 921

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            GHP++ Y+ + R   +    +        N+RL   V   +  +T+KG ++ +VT  +  
Sbjct: 922  GHPVEKYERVRRYYHVPEVSDLAP---NQNVRLVLFVRRIKVIRTKKGEQMAFVTGQDAT 978

Query: 1025 KEYEANFF 1032
             E     F
Sbjct: 979  GEISVTLF 986


>gi|161507446|ref|YP_001577400.1| DNA polymerase III alpha subunit [Lactobacillus helveticus DPC 4571]
 gi|160348435|gb|ABX27109.1| DNA polymerase III alpha subunit [Lactobacillus helveticus DPC 4571]
          Length = 1035

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/1024 (32%), Positives = 534/1024 (52%), Gaps = 44/1024 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    ++++++        A+ + D N  +  + F + A  AGI+P++G 
Sbjct: 6    LQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLADVNVTYGLVNFYELAKKAGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQGKQSVRIC 132
            Q          +   G         ++    T  GY  L+ L S + +L D G+ +  + 
Sbjct: 66   Q----------LRLNGLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +   + L+++   +   +    F  + Q+    +   K+L  D LY+ +  +   
Sbjct: 116  LKDLSKYLADLLLIVPANTKSELLSL-FETNKQLGSDLIRDLKELTSD-LYLGVYANPSM 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPRVTPD 251
              Y +  V  L+   +L L+AT +S +L+  D      L A+A    +       +    
Sbjct: 174  QNYID-YVRSLSKQFDLLLLATEDSEYLNPHDQFLQKTLRAIATGDKIQDALPLAKQEGS 232

Query: 252  HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HYL    +++  +   DL +A+ NT ++A +C+  +    P+LP++ +K+        E 
Sbjct: 233  HYLVEAEQLLQRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKF----VTSEE 288

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L   A  GL+ R  Q  I       +Y++RL++EL VI +M F  YFLIV D I +  +
Sbjct: 289  YLHYLAQTGLQQRFGQNKI-----PAEYQKRLNYELRVINQMGFDDYFLIVWDVINYCHR 343

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS  GS+ +Y+L IT++DP+ ++LLFERFLNP R  MPD D+D    +RD 
Sbjct: 344  VQITTGPGRGSACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRDT 403

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   ++ +    IP         
Sbjct: 404  VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWADAIPYSKGKITLK 463

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +A       R    A P    L + +  LEGL RH S HAAG+VI D  ++ +  +    
Sbjct: 464  EAYQQSRELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGLQAGP 523

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ   K++E  GL+K DFLGL+ LT+L   L+ + Q+G+K+D + IP +D +T 
Sbjct: 524  L-GIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLIRQQGIKIDPNQIPLNDAQTL 582

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  +FQ ES G+RQ L  + PD  ED++A+ +LYRPGP+ NI  +  RKNG+E
Sbjct: 583  QLFQQGKTDAVFQFESGGIRQVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVRRKNGQE 642

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++K
Sbjct: 643  AVRYPDPSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQEK 702

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI+G  K G +K +A  +++ + +FA+YGFN+SHA AY  I+Y  A++K HYP  F  
Sbjct: 703  GKFIAGTIKQGHTKAVAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPAAFYT 762

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +        K + +   A++ NI+I+PP +N   +++ + + +I   L AIKG+    
Sbjct: 763  AMLNSAAGA--KAQDYIMQAQEANIKILPPDINHSSLEYALKNKQILVGLKAIKGLRVDF 820

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            AR I  A   KP+ SL DF  R+D K L    +++L+ AGA D    +R +LL + D I 
Sbjct: 821  AREI--ADNTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNCDEII 878

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               Q              +   G       L+       + +   E++VLGF  +  PL 
Sbjct: 879  ANVQLT------GQNISLSEILGNA----PLKPADEPTGAEKAAMEEKVLGFSTTTSPLI 928

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K   +   +      G  +     ++  +Q +T+ G  + + +F++ + E E 
Sbjct: 929  AVQKFAQKFNSRPLNQFQLNESGVGV---GKLIRFKQIRTKNGKNMAFASFADTSGEQEV 985

Query: 1030 NFFP 1033
              FP
Sbjct: 986  VIFP 989


>gi|329577043|gb|EGG58517.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1467]
          Length = 1109

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/1034 (30%), Positives = 515/1034 (49%), Gaps = 60/1034 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +    +            ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEKEGHSE-----------LLLFAKNLKGYQQLMQLSSSKMTTEGPFYLA 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
                S L +     L  +T  + G + +  FF   Q A          F  + L+V    
Sbjct: 111  E-HQSLLSD-----LFAVTLSAKGEVAQ-TFFEDEQQAVHAFQQLASYFDPQSLFVEHSF 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKD 244
                ++ R   +       +LP VA      L+ E+  A  VL ++  +          +
Sbjct: 164  --SMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQTPE 221

Query: 245  RPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               +      +    +M+ I     E ++NT+++A  C   + +H  +LP F   +    
Sbjct: 222  IEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDN--- 276

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +   + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D 
Sbjct: 277  -QTAGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDV 328

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D  
Sbjct: 329  MDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIP 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN  
Sbjct: 389  DNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKL 448

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LV
Sbjct: 449  KITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLV 507

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+      ++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP
Sbjct: 508  PLQLGSN-EILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIP 566

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+ 
Sbjct: 567  LDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFI 626

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +A +LRRA+ KK K
Sbjct: 627  RRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQAAILRRAISKKKK 686

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K H
Sbjct: 687  DVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVH 746

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
            YP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  ++
Sbjct: 747  YPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSS 806

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R Q
Sbjct: 807  LKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQ 866

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L   L++  +         +    ++    K    +              ++      LG
Sbjct: 867  LAVGLESNIQSILL-----SGGSMDLLETLKPKEEEIADYPLEERLEQEEQY------LG 915

Query: 961  FYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y SGHP + +K   L K      +     +     +L   V + +  +T+KG ++ +V 
Sbjct: 916  VYLSGHPTEEFKKTRLAKQT----QLVHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVD 971

Query: 1020 FSEPAKEYEANFFP 1033
              +         FP
Sbjct: 972  GDDTTGSISLTLFP 985


>gi|325675561|ref|ZP_08155245.1| error-prone DNA polymerase [Rhodococcus equi ATCC 33707]
 gi|325553532|gb|EGD23210.1| error-prone DNA polymerase [Rhodococcus equi ATCC 33707]
          Length = 1115

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1033 (27%), Positives = 476/1033 (46%), Gaps = 61/1033 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS++S L+GA     ++++       AIA+TD + ++  + F++ A   G++ 
Sbjct: 80   PYAELHTHSAFSFLDGASPPEELVEEAVRLGLDAIALTDHDGMYGVVRFAEAAKELGMRT 139

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + G       + +L  T +  TP P    +++L    EGY+RL   ++  +L    K   
Sbjct: 140  VFGA------ELSLDATPRTGTPDPGGTHLLVLARGQEGYRRLSRQIAAAHLAGGEKGKP 193

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R     L E       +LTG   G +  A        AE  L      F  DR+ V L  
Sbjct: 194  RYDYDALTEAAGGHWQILTGCRKGHVRSALAAGGPDAAEAALRDLVDRFGADRVTVELTH 253

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRP 246
                 D    + + ++A   +LP++A+  + F           + AV     + +     
Sbjct: 254  RGLPEDDEINAALAEIATRQQLPVIASTAAHFAGPHRRRLAMAMAAVRARQSLDEAAGWL 313

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T   +L++ +EMV +F+  PEA+     +   C+F L++ AP LP F   +       
Sbjct: 314  APTGGAHLRSGAEMVRLFAQCPEAVAGAAALGLECAFDLRLIAPKLPPFDVPDG----HT 369

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E + LR   + G   R    +     +      +++ EL++I R+ F GYFL+V D + +
Sbjct: 370  EASWLRELTMQGARRRYGPPSANPAAY-----AQIEHELDIIERLTFPGYFLVVHDIVSF 424

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             K N+I +  GRGS A S   YA+ IT++DP+R  LLFERFL+P+R   PD D+D   DR
Sbjct: 425  CKGNDI-LCQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLSPERDGPPDIDVDIESDR 483

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+E I++V  KYG E  AQ+    + + K+++RD+ RAL     Q D   K +       
Sbjct: 484  REEAIQHVYTKYGREYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSKQVSRWTGVG 543

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                        +E     P    +LE++ ++EG  RH   H+ G+VI DRP++ + P+ 
Sbjct: 544  ------------QETDTDIPPA--VLELAAQIEGFPRHLGIHSGGMVICDRPIADVCPVE 589

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                 +  V Q++       GL+KFD LGL  L+ L   +D +A+   ++VDL+ +   +
Sbjct: 590  WARMENRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYMIDLVAEHKGIEVDLAQLDLSE 649

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
               Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI       Y  
Sbjct: 650  QAVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVHPYIR 709

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R+NG+E +V  HP ++  L  T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K+  
Sbjct: 710  RRNGREPVVYDHPCLEKALARTLGVPLFQEQLMQMAVDAAGFSAAEADQLRRAMGSKRSP 769

Query: 723  EEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            E+M++ + R   G  + +GI+  +A  I+E L  FA++GF +SH+ ++A + + ++W K 
Sbjct: 770  EKMERLRGRLYDGMRELHGITGDVADRIYEKLHAFANFGFPESHSQSFASLVFYSSWFKL 829

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI--YYSL 839
            H+P  F A  +  +       +    DAR+  +++    VN       +          L
Sbjct: 830  HHPAAFCAGLLRAQPMGFYSPQSLVADARRHGVRVHGADVNASLAHATLEACGTEVRLGL 889

Query: 840  AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
              ++G+G   A  I+ A A D PF S+ D   R+D        +ESL  AGAL CFG SR
Sbjct: 890  GEVRGIGDALADRIVAARAEDGPFRSILDLTGRIDLTTG---QVESLATAGALSCFGLSR 946

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             + L         A      R ++   + A  +               +       +   
Sbjct: 947  REALW-------AAGAAAGERPDRLPGMGASTRA--------PALPGMSDLELAAADVWA 991

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             G     +P +  +P L  +G+      +    G+ + +   V  +Q+  T  G  + +V
Sbjct: 992  TGVSPDSYPTEFLRPQLDALGVLPASRLLDVPDGDRVLVGGAVTHRQRPATAAG--VTFV 1049

Query: 1019 TFSEPAKEYEANF 1031
               +         
Sbjct: 1050 NLEDETGMVNVVC 1062


>gi|313105494|ref|ZP_07791765.1| hypothetical protein PA39016_000030000 [Pseudomonas aeruginosa 39016]
 gi|310878267|gb|EFQ36861.1| hypothetical protein PA39016_000030000 [Pseudomonas aeruginosa 39016]
          Length = 1024

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/1035 (27%), Positives = 470/1035 (45%), Gaps = 82/1035 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q A    +Q 
Sbjct: 3    AYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQAAREHQVQL 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G                 +      P +VLL    EGYQ L  L++R       K   
Sbjct: 63   IVGS----------------EIRLEQGPKLVLLAEDLEGYQNLCRLITRGR-RQADKGHY 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    LQ+    GL+ +           +  N  +  +++    ++ F  RL++ ++ H
Sbjct: 106  RLLREDLQQPLA-GLLAI-----------WLPNDHE--DEQAAWLRERFPQRLWLGVELH 151

Query: 190  RG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            RG  D  R  +++ LA    LP VA  +    +       D + A+ +   VS+      
Sbjct: 152  RGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLPVSEAGAYLF 211

Query: 249  -TPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L+    ++ I+   P+AL   T++IA RC F L+      PR +     D    
Sbjct: 212  PNGERHLRTLEALLGIY---PQALLAETLKIAERCRFDLEQLKYQYPRELVPAGHD---- 264

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR+    G+  R   GA AK       R++++ EL +IA + +  YFL V D + +
Sbjct: 265  PASWLRHLTEQGIARRWPNGASAK------VRKQIERELELIAELGYESYFLTVQDIVAF 318

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I +  GRGS A S   +AL IT++DP R +LLFERFL+ +R   PD D+DF  +R
Sbjct: 319  ARGREI-LCQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPDIDVDFEHER 377

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L           
Sbjct: 378  REEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLANCCGRWSDQA 437

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             S + + +           P + R+L ++ +L G  RH S H  G VI ++PL  LVP+ 
Sbjct: 438  PSAERLEE----AGFDPQSPILRRVLALTGELIGFPRHLSQHPGGFVISEQPLDTLVPVE 493

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--QRGVKVDLSLIPFD 604
                ++  V Q++   ++  GL+K D L L  L+ L++S D +   + G ++ ++ IP +
Sbjct: 494  NASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKRLSIASIPSE 553

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y 
Sbjct: 554  DPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQGDMVHPYL 613

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EAD LRR+M   K 
Sbjct: 614  RRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADELRRSMAAWKR 673

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               ++  +ER   G   NG     A  IFE +  F  YGF +SHAA++A+++Y ++W+K 
Sbjct: 674  HGGLEHHRERLTRGMLANGYEADFAARIFEQIKGFGSYGFPESHAASFALLTYASSWLKR 733

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIY 836
            H P  F  A +           +  QDAR+  +Q  P  V     D  +         I 
Sbjct: 734  HEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLEPFGQAQPAIR 793

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  I+G     AR I +    +PF  + D   R      + R LE L  AGAL     
Sbjct: 794  LGLRMIRGFREEDARRIEQVREAQPFLDVHDLGRRARL---DARALELLADAGALRGLAG 850

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R +   ++ ++                 +FA         ++L    + +      ++ 
Sbjct: 851  HRHKARWAVASV------------EPQLPLFAEGTVIEESTVSLP---LPSRGEELLSDY 895

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             +LG     HPL + +  L+    +   E      G  IR+A +VV +Q+ +T  G  I 
Sbjct: 896  ALLGTTLGPHPLKLLRGKLKARRCRDSRELAKLGHGRPIRVAGLVVGRQRPQTASG--IT 953

Query: 1017 WVTFSEPAKEYEANF 1031
            ++T  +         
Sbjct: 954  FITLEDEFGMVNVVV 968


>gi|254822689|ref|ZP_05227690.1| error-prone DNA polymerase [Mycobacterium intracellulare ATCC 13950]
          Length = 1095

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/1039 (27%), Positives = 482/1039 (46%), Gaps = 62/1039 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             +S  +  L  HS++S L+GA +   ++++ A     A+A+TD + L+ A+ F++ A   
Sbjct: 57   ARSVPYAELHAHSAFSFLDGASTPEELVEEAARLGLRALALTDHDGLYGAVRFAEAAAEL 116

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
             ++ + G       + +L    + + P P  P +++L    EGY+RL   ++  +L    
Sbjct: 117  DMRTVFGA------ELSLGGEARTERPDPAGPHLLVLARGPEGYRRLSRQLAAAHLAGGE 170

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYV 184
            K   R     L E       +LTG   G + +A        AE+ L      F    + V
Sbjct: 171  KGKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSDGGPDAAERALADLVDRFGAQSVSV 230

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQ 242
             L  H    D  R + +  LA    + +VAT  + F           + A+    ++ S 
Sbjct: 231  ELTHHGQPLDDERNAVLAALAPRFGVGVVATTGAHFAGPSRRRLAMAMGAIRARESLDSA 290

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                      +L++ +EM  +F+  P+ +    E+  +C+F L + AP LP F   +   
Sbjct: 291  AGWLAPLGGSHLRSGAEMARLFAGGPDVVTAAAELGEQCAFGLALIAPQLPPFDVPDG-- 348

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                E++ LR   +AG   R        G +A     +++ EL VIA+++F GYFL+V D
Sbjct: 349  --HTEDSWLRQLTMAGARDRY-------GPNAPRAYAQIEHELKVIAQLQFPGYFLVVHD 399

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
              ++ + NNI +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D+D 
Sbjct: 400  IARFCRDNNI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDMDI 458

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D+R++VI+YV +KYG +  AQ+    + + K A+RD+ RAL     Q D   K I + 
Sbjct: 459  ESDQREKVIQYVYDKYGRDYAAQVANVITYRGKIAVRDMARALGFSQGQQDAWSKQISHW 518

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                     +AD     +          +++++ ++  L RH   H+ G+VI DRP++ +
Sbjct: 519  GG-------LADSPEVEDIPEP------VIDLANQIRNLPRHMGIHSGGMVICDRPIADV 565

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601
             P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+   ++VDL+ +
Sbjct: 566  CPVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDLARL 625

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--V 659
               +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI      
Sbjct: 626  DLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVH 685

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-G 718
             Y  R+NG++ +V  HP ++P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  
Sbjct: 686  PYIRRRNGEDPVVYDHPSMEPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGS 745

Query: 719  KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            K+  E M + + RF  G    +G    +    +E L  FA++GF +SHA ++A + + ++
Sbjct: 746  KRSTERMRRLRGRFYEGMRALHGAPDEVIDRTYEKLEAFANFGFPESHALSFASLVFYSS 805

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W K H+P  F AA +  +       +    DAR+  + +  P VN       + +     
Sbjct: 806  WFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHATLENTGTEV 865

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               L A++ +G   A  ++E   A+ PF SL D  SR+     +    E+L  AGA  CF
Sbjct: 866  RLGLGAVRHIGDDLAEQLVEERKANGPFASLLDVTSRLQL---SVPQTEALATAGAFACF 922

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            G SR + L +               T +   +      +      +      +       
Sbjct: 923  GMSRREGLWAAGAA----------ATQRPGRLPGVGSSSH-----VPALPGMSELELAAA 967

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +    G     +P    +  L  MG+   E+  +   G+ + +A  V  +Q+  T +G  
Sbjct: 968  DVWATGISPDSYPTQFLREDLDAMGVVPAEKLGSVPDGDRVLIAGAVTHRQRPGTAQG-- 1025

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + ++   +          P
Sbjct: 1026 VTFLNLEDETGMVNVLCAP 1044


>gi|330822180|ref|YP_004351008.1| DNA polymerase III, alpha subunit [Burkholderia gladioli BSR3]
 gi|327374332|gb|AEA65685.1| DNA polymerase III, alpha subunit [Burkholderia gladioli BSR3]
          Length = 1049

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/1035 (27%), Positives = 472/1035 (45%), Gaps = 59/1035 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQ  S++S L GA     ++++ A     AIAITD  +L   +    +A AAG+ 
Sbjct: 10   PAYAELQCASNFSFLHGASRAEELVERAARLGYSAIAITDECSLAGVVRAHMEAKAAGLP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             II          + ++T    +P     ++       EGY  L EL++        K +
Sbjct: 70   LII--------GSHFRLTAGDGSPALAFTAL---AMNREGYGNLCELITLGRTR-AAKGT 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L+        + +      I    F  + Q  + +L    ++FGDR  V L  
Sbjct: 118  YRLAPMDLEHPEAPLEHLRSLPDCMIIVTPDFPANEQRLDAQLEWAARVFGDRARVALTL 177

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H R  D      V + A  H++P+VAT+  L          DVL  +     V +     
Sbjct: 178  HARAMDDIHRGAVERAAARHDVPVVATSWPLMHVRSRKPLQDVLTGIRLGRSVGECGYEL 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  + +++     ALE TV IA+RC+F L       P     E       
Sbjct: 238  APNAERHLRSRLRLANLYP--AGALEETVRIAQRCTFSLDELRYEYP----DELVPAGYT 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR +   G   R   G         + + +++ EL +IA +K+  YFL V D +++
Sbjct: 292  PASYLREQTYIGAHGRFPNGI------PFNVQAQIEHELQLIAELKYEPYFLTVYDIVRF 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  NI +  GRGS A S   Y L +T++DP R ++LFERF++ +R   PD D+DF   R
Sbjct: 346  ARSQNI-LCQGRGSAANSAVCYCLRVTEVDPARGNMLFERFISKERNEPPDIDVDFEHQR 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++Y+ +KYG +R A      + + + ALR+ G+AL +    VDR+ K      +  
Sbjct: 405  REEVMQYIYSKYGRDRAALTAAVSTYRPRGALREAGKALGVDPIIVDRVAKAHHWFDSKA 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L   A+        +  P   +    +  L G  RH S H+ G VI    LS++VP+ 
Sbjct: 465  DLLARFAE----AGLDVEAPMNQQWAAFATALLGYPRHLSQHSGGFVISRTKLSRMVPIE 520

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                 D  + Q++   IE  GL+K D L L  L++++++L+ +  +RG   +L  IP +D
Sbjct: 521  NAAMEDRTIIQWDKDDIEALGLLKIDVLALGMLSMVRRALEMISEKRGEAFELQDIPAED 580

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
              TY +L    ++G+FQ+ES      L  +QP C  D++  V++ RPGP+   +   +  
Sbjct: 581  AATYEMLCHGDSMGVFQVESRAQMSMLPRLQPRCFYDLVIEVAIVRPGPVQGGMVHPFLR 640

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+ G E +    P ++  LK T GV I+QEQVMQ+A L +G+S  EAD LRRAM   K K
Sbjct: 641  RRQGLEPVTFPSPDVEKALKRTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKRK 700

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              ++   ER ++G    G  +  A  IF  +  F DYGF +SHAA++A++ Y +AW++ H
Sbjct: 701  GGLEPYHERLVNGMLARGYDRDFAEAIFAQIKGFGDYGFPESHAASFALLVYASAWLRRH 760

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI----YYS 838
             P  FLAA +  +        +  QDAR+  ++++P  V T   D  +  +         
Sbjct: 761  EPAVFLAALLNSQPMGFYTPSQLIQDARRRGVEVLPVDVTTSTWDSVLEGDTTAAPVRLG 820

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            ++ I G+    A  I  A A +PF  + D   R    + +  VL     A AL       
Sbjct: 821  MSLISGMRVEAAERIQLARAVRPFVDVADLARRAALDRHDLTVL---AHASALRSLAK-- 875

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
                      ++ A W         + +   E+    +   L + S  +  V    + R 
Sbjct: 876  --------GNRRNAIWTAAAAVPDKDILRGTERDD--EAPALPQASEGSEIV---TDYRA 922

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +GF    HPL++ +  LR   +    E      G   R   +V  +Q+  T KG  + ++
Sbjct: 923  MGFTLGRHPLELLRDRLRADRLLPARELAQLRNGQFARACGIVTVRQRPGTAKG--VLFI 980

Query: 1019 TFSEPAKEYEANFFP 1033
            T  +   +     +P
Sbjct: 981  TLEDETGQTNVIVWP 995


>gi|108798154|ref|YP_638351.1| error-prone DNA polymerase [Mycobacterium sp. MCS]
 gi|119867250|ref|YP_937202.1| error-prone DNA polymerase [Mycobacterium sp. KMS]
 gi|108768573|gb|ABG07295.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium sp. MCS]
 gi|119693339|gb|ABL90412.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium sp. KMS]
          Length = 1099

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/1033 (27%), Positives = 477/1033 (46%), Gaps = 57/1033 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS+YS L+GA +   ++++ A     AIA+TD + L+  + F++ A    ++ 
Sbjct: 60   PYAELHAHSAYSFLDGAGTPEELVEEAARLDLRAIALTDHDGLYGVVRFAEAARELDMRT 119

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + G +L + M      + + + P P  P +++L    EGY+RL   +++ +L    K   
Sbjct: 120  VFGAELSLGMGAR---SARNEVPDPPGPHLLVLARGPEGYRRLSREIAKAHLAGGEKGKP 176

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R     L E       +LTG   G + +A        AEK L      F  DR+ V L  
Sbjct: 177  RYDYDTLTEAAGGHWHILTGCRKGHVRQALSEGGPAAAEKALADLVDRFGRDRVSVELTH 236

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRP 246
            H    D  R + + +LA    L +VAT  + F           + A+     + +     
Sbjct: 237  HGHPLDDERNAALAELAPRFGLTVVATTAAHFAEPSRGRLAMAMGAIRARHSIDEAAGYL 296

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  +L++  EM  +F+  P+ +    ++  +C+F L + AP LP F           
Sbjct: 297  APLGGSHLRSGEEMARLFAHCPQVVTAAADLGEQCAFGLALIAPKLPPFDVPAG----HT 352

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E++ LR+  + G   R   G   +    Q Y  +++ EL VI ++ F GYFL+V D  ++
Sbjct: 353  EDSWLRHLVMLGARNRY--GPPERA--PQAY-AQIEHELRVIEKLSFPGYFLVVHDITRF 407

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             K+N I +  GRGS A S   YAL +T++DP+   LLFERFL+P R   PD DID   D 
Sbjct: 408  CKENGI-LAQGRGSAANSAVCYALGVTNVDPVANELLFERFLSPARDGPPDIDIDIESDL 466

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R++ I+YV ++YG +  AQ+    + + ++A+RD+ RAL     Q D   K +       
Sbjct: 467  REQAIQYVYDRYGRDYAAQVANVITYRGRSAIRDMARALGFSQGQQDAWSKQLS------ 520

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                 +AD                +++++ ++  L RH   H+ G+VI DRP++ + P+ 
Sbjct: 521  -KWNGLADSPDIEGIPEP------VVDLALQISNLPRHMGIHSGGMVICDRPIADVCPVE 573

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                ++  V Q++       GL+KFD LGL  L+ L   +D + +   + VDL+ +   +
Sbjct: 574  WARMANRSVLQWDKDDCAAIGLVKFDMLGLGMLSALHYCIDLVREHKGLDVDLAKLDLSE 633

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
               Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI       Y  
Sbjct: 634  PAVYEMLQRADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHPYIK 693

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R+NG+E +   HP +   L++T GV ++QEQ+MQ+A   +G++ +EAD LRRAM  K+  
Sbjct: 694  RRNGEEPVTYDHPSMANALRKTLGVPLFQEQLMQLAVDCAGFTAAEADQLRRAMGSKRST 753

Query: 723  EEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            E+M + + RF  G  + +GI+  +A  I++ L  FA++GF +SH+ ++A + + ++W K 
Sbjct: 754  EKMRRLRGRFYDGMRQRHGITGEVADRIYDKLEAFANFGFPESHSLSFASLVFYSSWFKL 813

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI--YYSL 839
            H+P  F AA +  +       +    DAR+  + +  P VN       +          L
Sbjct: 814  HHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAYATLESAGTEVRLGL 873

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             A++ +G   A  I+E   A+ PF+SL D   RV     +    E+L  AGAL CFG +R
Sbjct: 874  GAVRHIGDDLAERIVEERKANGPFESLLDLTGRVQL---SVPQTEALATAGALGCFGVTR 930

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             + L         A     +R            G+     +L   S          +   
Sbjct: 931  REGLW----AAGAAAAERPDRLPG--------VGSAGQVPSLPGMS---KLELAAADVWA 975

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             G     +P    +  L  MG+      +    G  + +A  V  +Q+  T +G  + ++
Sbjct: 976  TGVSPDSYPTQFLRENLDAMGVVPAGRLLDVPDGTRVLVAGAVTHRQRPATAQG--VTFL 1033

Query: 1019 TFSEPAKEYEANF 1031
               +         
Sbjct: 1034 NLEDETGMVNVVC 1046


>gi|224476792|ref|YP_002634398.1| DNA polymerase III subunit alpha [Staphylococcus carnosus subsp.
            carnosus TM300]
 gi|222421399|emb|CAL28213.1| DNA polymerase III alpha subunit [Staphylococcus carnosus subsp.
            carnosus TM300]
          Length = 1067

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/1024 (33%), Positives = 545/1024 (53%), Gaps = 78/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H++Y LL  +L + +I+ K   +    +AITDTN L +  +F   +  AGI+P+ 
Sbjct: 3    AHLNIHTAYDLLNSSLKVPDIIQKAVQEGYETLAITDTNVLHAVPQFYDASIKAGIKPVF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +             +   T    VLL     G + L +L S +    + ++    
Sbjct: 63   GMTIYL-------------SDGLTELETVLLAKNEAGLKSLYQLSSAI----KVQEKYAT 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             + WL++     +I+                           FK +  ++L +     + 
Sbjct: 106  PIEWLKKYQDNLVII---------------------------FKNVTSEQLNLVHHFEKH 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y + Q    A   +L +V    + +L+ ED +    L A+  +  +   +       
Sbjct: 139  PDLYVDHQSSGAAERLDLNMVYMQEARYLNAEDADTLSALNAIKDNQTIDLVN-TGSNHH 197

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +   ++E+  +     + +ENT  +A  C+  ++ H P+LP++   +        +  L
Sbjct: 198  AHFYTQNEVNDL-GLSADVIENTETLAELCTTEIEYHQPLLPQYQTPDN----SSSKTYL 252

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
             +     LE           +    YR+RL++E N+I  M +  YFLIV+D I +AK +N
Sbjct: 253  WHLLEQSLEKM--------EFDQSQYRERLEYEFNIITEMGYEDYFLIVSDLIHYAKTHN 304

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDPLR++LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 305  VMVGPGRGSSAGSLVSYLLNITTIDPLRYNLLFERFLNPERVTMPDIDIDFEDTRREKVI 364

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ KYG   V+ I+TFG L AKA  RDVGR +    S +  + KLIP+     ++L  
Sbjct: 365  QYVQEKYGDYHVSGIVTFGHLLAKAVARDVGRIMGFEESTLSEISKLIPSKLG--ITLSE 422

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  F+E    +   ++  E+S+KLEGL RH STHAAGI+I DRPL + VP++     
Sbjct: 423  AYQNESFKEFVHRNHRHEKWFELSKKLEGLPRHTSTHAAGIIINDRPLYEHVPLFMGDTG 482

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   EK GL+K DFLGLK L+++ + +D + +   V +D+  IPFDD + + 
Sbjct: 483  --LLTQWTMTEDEKLGLLKIDFLGLKNLSIIHQIIDQVKKDLNVSIDIEAIPFDDPKVFE 540

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +L+   T G+FQLES G+RQAL+ +QP   EDI+A+ SLYRPGP++ I  Y  R++   K
Sbjct: 541  MLSRGDTTGLFQLESDGVRQALKRLQPQHFEDIVAMTSLYRPGPMEEIPTYITRRHVPSK 600

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+MQIA   +G+S  EAD+LRRAM KK +  ++ +++
Sbjct: 601  VQYLHPDLEPILKNTYGVIIYQEQIMQIASKFAGFSYGEADILRRAMSKKNRAMLENERQ 660

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ GA++NG S+ ++  IF+L+ KFADYGF ++HA +Y+ I+Y  A++K HYP  F A 
Sbjct: 661  HFVDGANQNGYSEQLSKQIFDLILKFADYGFPRAHAVSYSKIAYTMAYLKVHYPNYFYAN 720

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +T  + N +K +    +A+  N++I+PP +N     ++     IY SL A+KGVG  + 
Sbjct: 721  ILTNSIGNDKKTELMVTEAKSMNLKILPPDINESHWYYRATSKGIYLSLGAVKGVGYQSV 780

Query: 851  RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+E    +  +    D   R+ ++   R++LESL+  GA D F  +R  LL +LD + 
Sbjct: 781  KAIVEERYENGKYKDFFDLTRRLPNRVKTRKLLESLILVGAFDQFNENRATLLSTLDQVL 840

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
              A  VE++       +F       + K + +        V  + E+  LGFY S HP++
Sbjct: 841  DGASNVEQDEL-----LFEF----VTPKESYQAKEELPDKVLSDFEKEHLGFYISKHPVE 891

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                I     + G  +         I +   +    + +T+ G  + +VT ++  K  + 
Sbjct: 892  ---KIFENKQLLGIYKLSNAKNNQPILV--QIDKMNRIRTKNGQPMAFVTLNDGTKTLDG 946

Query: 1030 NFFP 1033
              FP
Sbjct: 947  VIFP 950


>gi|107100135|ref|ZP_01364053.1| hypothetical protein PaerPA_01001156 [Pseudomonas aeruginosa PACS2]
          Length = 1024

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1035 (27%), Positives = 463/1035 (44%), Gaps = 82/1035 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q A    +Q 
Sbjct: 3    AYAELHCLSNFSFQRGASSATELFARAARLGYRALAITDECSLAGIVRAWQAAREHQVQL 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G                 +      P +VLL    EGYQ L  L++R       K   
Sbjct: 63   IVGS----------------EIRLEQGPKLVLLAEDLEGYQNLCRLITRGR-RQADKGHY 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    LQ+     L +      G               ++    ++ F  RL++ ++ H
Sbjct: 106  RLLREDLQQPLAGLLAIWLPNDHGD--------------EQAAWLRERFPQRLWLGVELH 151

Query: 190  RG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            RG  D  R  +++ LA    LP VA  +    +       D + A+ +   VS+      
Sbjct: 152  RGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLPVSEAGAYLF 211

Query: 249  -TPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L+    +  I+   P+AL   T++IA RC F L+      PR +     D    
Sbjct: 212  PNGERHLRTLEALQGIY---PQALLAETLKIAERCRFDLEQLKYQYPRELVPAGHD---- 264

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR+    G+  R   GA AK       R++++ EL +IA + +  YFL V D + +
Sbjct: 265  PASWLRHLTEQGIARRWPNGASAK------VRKQIERELELIAELGYESYFLTVQDIVAF 318

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I +  GRGS A S   +AL IT++DP R +LLFERFL+ +R   PD D+DF  +R
Sbjct: 319  ARGRKI-LCQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPDIDVDFEHER 377

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L           
Sbjct: 378  REEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLANCCGRWSDQA 437

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             S + + +           P + R+L ++ +L G  RH S H  G VI ++PL  LVP+ 
Sbjct: 438  PSAERLEE----AGFDPQSPILRRVLALTDELIGFPRHLSQHPGGFVISEQPLDTLVPVE 493

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--QRGVKVDLSLIPFD 604
                ++  V Q++   ++  GL+K D L L  L+ L++S D +   + G ++ ++ IP +
Sbjct: 494  NASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKRLSIASIPSE 553

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y 
Sbjct: 554  DPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQGDMVHPYL 613

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EAD LRR+M   K 
Sbjct: 614  RRRNGEEPVAYPSAELEKVFERTLGVPLFQEQVMELAIVAADYTPGEADELRRSMAAWKR 673

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               ++  +ER   G    G     A  IFE +  F  YGF +SHAA++A+++Y ++W+K 
Sbjct: 674  HGGLEHHRERLTRGMLAKGYEADFAARIFEQIKGFGSYGFPESHAASFALLTYASSWLKR 733

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIY 836
            H P  F  A +           +  QDAR+  +Q  P  V     D  +         I 
Sbjct: 734  HEPAAFACALINSWPMGFYSPDQLLQDARRHTLQTRPVDVRHSGWDCSLESFGQAQPAIR 793

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  I+G     AR I +    +PF  + D   R      + R LE L  AGAL     
Sbjct: 794  LGLRMIRGFREEDARRIEQVREAQPFLDVHDLGRRARL---DARALELLADAGALRGLAG 850

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R +   ++ ++                 +FA         ++L    + +      ++ 
Sbjct: 851  HRHKARWAVASV------------EPQLPLFAEGTVIEETTVSLP---LPSRGEELLSDY 895

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             +LG     HPL + +  L+    +   E      G  IR+A +VV +Q+ +T  G  I 
Sbjct: 896  ALLGTTLGPHPLKLLRGQLKACRCRDSRELAKLGHGRPIRVAGLVVGRQRPQTASG--IT 953

Query: 1017 WVTFSEPAKEYEANF 1031
            ++T  +         
Sbjct: 954  FITLEDEFGMLNVVV 968


>gi|229546892|ref|ZP_04435617.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1322]
 gi|256852698|ref|ZP_05558069.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|229308057|gb|EEN74044.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1322]
 gi|256712043|gb|EEU27080.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|315029734|gb|EFT41666.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX4000]
          Length = 1109

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/1034 (30%), Positives = 516/1034 (49%), Gaps = 60/1034 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +    +            ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEKEGHSE-----------LLLFAKNLKGYQQLMQLSSSKMTTEGPFYLA 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
                S L +     L  +T  + G + +  FF   Q A          F  + L+V    
Sbjct: 111  E-HQSLLSD-----LFAVTLSAKGEVAQ-TFFEDEQQAVHAFQQLASYFDPQSLFVEHSF 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKD 244
                ++ R   +       +LP VA      L++E+  A  VL ++  +          +
Sbjct: 164  --SMNQQRNPALFSFYQREQLPGVALQEVRHLTKEEGFAVTVLESIKENNQLNITSQTPE 221

Query: 245  RPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               +      +    +M+ I     E ++NT+++A  C   + +H  +LP F        
Sbjct: 222  IEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAGNCRVDIPLHQKLLPHFPV----LA 275

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +   + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D 
Sbjct: 276  NQTAGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDV 328

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D  
Sbjct: 329  MDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIP 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN  
Sbjct: 389  DNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKL 448

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LV
Sbjct: 449  KITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLV 507

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+      ++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP
Sbjct: 508  PLQPGSN-EILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIP 566

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+ 
Sbjct: 567  LNDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFI 626

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K
Sbjct: 627  RRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKK 686

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K H
Sbjct: 687  DVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVH 746

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
            YP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  ++
Sbjct: 747  YPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSS 806

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R Q
Sbjct: 807  LKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQ 866

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L   L++  +         +    ++    K    +              ++      LG
Sbjct: 867  LAVGLESNIQSILL-----SGGSMDLLETLKPKEEEIADYPLEERLEQEEQY------LG 915

Query: 961  FYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y SGHP + +K   L K      +     +     +L   V + +  +T+KG ++ +V 
Sbjct: 916  VYLSGHPTEEFKKTRLAKQT----QLVHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVD 971

Query: 1020 FSEPAKEYEANFFP 1033
              +         FP
Sbjct: 972  GDDTTGSISLTLFP 985


>gi|315445823|ref|YP_004078702.1| DNA polymerase III subunit alpha [Mycobacterium sp. Spyr1]
 gi|315264126|gb|ADU00868.1| DNA polymerase III, alpha subunit [Mycobacterium sp. Spyr1]
          Length = 1099

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/1036 (26%), Positives = 481/1036 (46%), Gaps = 60/1036 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            +S  +  L  HS+YS L+GA +   ++++ +     A+A+TD + L+  + F++ A    
Sbjct: 60   RSMPYAELHAHSAYSFLDGASTPEELVEEASRLGLRALALTDHDGLYGVVRFAEAAKELD 119

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +  + G +L +       +      P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 120  VDTVFGAELSLGGGTRTDV------PDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 173

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
              +R     L E       +LTG   G + +A        AE  L      F  +R+ V 
Sbjct: 174  GVLRYDFDALTEAAGGHWQILTGCRKGHVRQALLRGGDSAAEAALADLVDRFGRERVTVE 233

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK- 243
            L  H    D  R + +  LA    L ++AT  + F           + A+     + +  
Sbjct: 234  LTHHGHPLDDERNAALAALAPRFGLTVIATTAAHFAEPSRGRLAMAMGAIRARNSIDEAA 293

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++  EM  +F+  PE +    ++  +C+F L + AP LP F        
Sbjct: 294  GYLAPLGGSHLRSGEEMARVFAHCPEVVTAAADLGEQCAFGLALIAPQLPPFEVPAG--- 350

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E + LR+  + G   R   G   +   A     +++ EL VI ++ F GYFL+V D 
Sbjct: 351  -HTENSWLRHLVMQGARERY--GPPERASRA---YAQIEHELRVIEQLNFPGYFLVVHDI 404

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             ++ ++N I +  GRGS A S   YAL +T++DP+   LLFERFL+P R   PD DID  
Sbjct: 405  TRFCRENAI-LSQGRGSAANSAVCYALKVTNVDPIANGLLFERFLSPARDGPPDIDIDIE 463

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D R++ I+YV  +YG E  AQ+    + + ++A+RD+ RAL     Q D   K I    
Sbjct: 464  SDLREKAIQYVYERYGREYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQISQW- 522

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                            +A   +   + +++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 523  ------------GNLADATHVEDIPEPVIDLAMQISHLPRHMGIHSGGMVICDRPIADVC 570

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+   ++VDL+ + 
Sbjct: 571  PVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGLEVDLAKLD 630

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VV 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI       
Sbjct: 631  LSEPAVYEMLQRADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 690

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+NG+E +   HP ++  L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K
Sbjct: 691  YIKRRNGQEPVTYEHPSMERALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 750

Query: 720  KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E+M + + RF  G ++ +GIS  +A  I+E L  FA++GF +SH+ ++A + + ++W
Sbjct: 751  RSTEKMRRLRGRFFEGMAELHGISGDVARRIYEKLEAFANFGFPESHSLSFASLVFYSSW 810

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IY 836
             K H+P  F AA +  +       +    DAR+  + +  P VN       + ++   + 
Sbjct: 811  FKLHHPAAFCAALLRAQPMGFYSPQTLVADARRHGVDVHGPDVNASLAHATLENHGLDVR 870

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L +I+ +G   A+ ++E    + PF SL D   RV          E+L  AGAL CFG
Sbjct: 871  LGLGSIRHIGDELAQRLVEDRKLNGPFVSLTDLTRRVQLT---VPQTEALATAGALGCFG 927

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R + L +       A     +R            G+ S   +L   +          +
Sbjct: 928  ITRREGLWAAG----AAATERPDRLPG--------VGSSSQVPSLPGMTE---LELTAAD 972

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +P +  +  L  MG+   +  ++   G  + +A  V  +Q+  T +G  +
Sbjct: 973  VWATGVSPDRYPTEFLREDLDAMGVVPADRLLSVRDGTRVLVAGAVTHRQRPATAQG--V 1030

Query: 1016 GWVTFSEPAKEYEANF 1031
             ++   +         
Sbjct: 1031 TFLNLEDETGMVNVLC 1046


>gi|325956638|ref|YP_004292050.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC]
 gi|325333203|gb|ADZ07111.1| DNA polymerase III, alpha subunit [Lactobacillus acidophilus 30SC]
          Length = 1035

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/1024 (32%), Positives = 530/1024 (51%), Gaps = 44/1024 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    + +++         A+ + D N  +  + F + A   GI+P++G 
Sbjct: 6    LQNLSSFTLLDSPTKVADLIKTAKEKGYSAVGLADINVTYGLVNFYEIAKKEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
            Q+ ++          G         +++   T  GY  L+ L S + LL + G+    + 
Sbjct: 66   QIRLN----------GLIDSTQKYDLLVFAKTNAGYHNLLRLSSAINLLTENGQNDKILT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +   + L+++   +   +    F  + Q+    L   KK+  D  Y+ +   +  
Sbjct: 116  LKELTKYLEDLLVIIPANTRSEL-VYLFETNQQLGSDYLRDLKKIVPD-FYLGVYAAKNA 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPRVTPD 251
             +     V  L+   +LPLVA  +S +L   D      L A+     +       +    
Sbjct: 174  -QDYLDYVRSLSKQFDLPLVAVEDSEYLRPRDQFLQKTLRAIRSGQKMQDMVPLAKQDGS 232

Query: 252  HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HY+ +  +M+  +   DL +A+ NT +IA +C+  +    P+LP++ + +        E 
Sbjct: 233  HYMVDAEQMLERYHRFDLDDAVNNTAKIAEKCNAEVIFQKPVLPKYHQNKFP----TSEE 288

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L   A  GL+ R  Q  I       +Y++RL++EL +I +M F  YFLIV D I +  +
Sbjct: 289  YLHYLAQTGLQARFGQEKI-----PTEYQKRLNYELRIINQMGFDDYFLIVWDVINYCHR 343

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS  GS+ +Y+L IT++DPL++ LLFERFLNP R  MPD D+D     RD 
Sbjct: 344  VKITTGPGRGSACGSLVSYSLRITEVDPLKYHLLFERFLNPARHEMPDIDLDIPDIHRDT 403

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   +V++  + IP         
Sbjct: 404  VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEVNKWVRAIPFSKGKMTLK 463

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            QA  +    R    A      L   +  LEGL RH S HAAG+VI D  ++ +  +    
Sbjct: 464  QAYEESRELRLLVDATEENKLLFRTAMALEGLPRHYSIHAAGLVISDDSIAGISGLQAGP 523

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ   K++E  GL+K DFLGL+ LT+L   LD +  +GVK+D + IP +D +T 
Sbjct: 524  L-GIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILDLVRSQGVKIDPNKIPLNDAKTL 582

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  IFQ ES G+R+ L  + PD  ED++A+ +LYRPGP+ NI  +  RKNG E
Sbjct: 583  ELFQQGKTDAIFQFESEGIRRVLRQLHPDNFEDLVAVNALYRPGPMQNIDTFVARKNGNE 642

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++K
Sbjct: 643  PVRYPDPSLKQILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQEK 702

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI+G  KNG SK +   ++  + +FA+YGFN+SHA AY  I++  A++K HYP  F  
Sbjct: 703  SKFIAGVVKNGHSKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFYT 762

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +        K +++   A++ NI+++ P +N   +++ + +N I   L AIKG+    
Sbjct: 763  AMLNSSTSA--KAQQYVMQAQEANIRVLTPDINHSQLEYTLQNNNILVGLKAIKGLRVDF 820

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A+ I  A+  KP+ SL DF  R+DSK L    +E+L+ AGA D    +R +LL +  +I 
Sbjct: 821  AKEI--AANTKPYKSLSDFLRRIDSKFLQIDAIEALIMAGAFDQIEDNRNELLANCKDII 878

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               Q   +N      ++             L+   +  +  + E E++VLGF  +  PL 
Sbjct: 879  ANVQLTGQN-----ISL-----SEILGDAPLKPAEIPTNGEKAEMEEKVLGFATTTTPLV 928

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K       +      G  +     ++S ++ +T+    + +  F++ + + E 
Sbjct: 929  AVQKYAQKFNALPLNQFQFNESGIGV---GKLMSLKRIRTKNDKTMAFAGFADSSSQQEV 985

Query: 1030 NFFP 1033
              FP
Sbjct: 986  IIFP 989


>gi|126433813|ref|YP_001069504.1| error-prone DNA polymerase [Mycobacterium sp. JLS]
 gi|126233613|gb|ABN97013.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium sp. JLS]
          Length = 1099

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/1033 (27%), Positives = 477/1033 (46%), Gaps = 57/1033 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS+YS L+GA +   ++++ A     AIA+TD + L+  + F++ A    ++ 
Sbjct: 60   PYAELHAHSAYSFLDGAGTPEELVEEAARLDLRAIALTDHDGLYGVVRFAEAARELDMRT 119

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + G +L + M      + + + P P  P +++L    EGY+RL   +++ +L    K   
Sbjct: 120  VFGAELSLGMGAR---SARNEVPDPPGPHLLVLARGPEGYRRLSREIAKAHLAGGEKGKP 176

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R     L E       +LTG   G + +A        AEK L      F  DR+ V L  
Sbjct: 177  RYDYDALTEAAGGHWHILTGCRKGHVRQALSEGGPAAAEKALADLVDRFGRDRVSVELTH 236

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRP 246
            H    D  R + + +LA    L +VAT  + F           + A+     + +     
Sbjct: 237  HGHPLDDERNAALAELAPRFGLTVVATTAAHFAEPSRGRLAMAMGAIRARHSIDEAAGYL 296

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  +L++  EM  +F+  P+ +    ++  +C+F L + AP LP F           
Sbjct: 297  APLGGSHLRSGEEMARLFAHCPQVVTAAADLGEQCAFGLALIAPKLPPFDVPAG----HT 352

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E++ LR+  + G   R   G   +    Q Y  +++ EL VI ++ F GYFL+V D  ++
Sbjct: 353  EDSWLRHLVMLGARNRY--GPPERA--PQAY-AQIEHELRVIEKLSFPGYFLVVHDITRF 407

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             K+N I +  GRGS A S   YAL +T++DP+   LLFERFL+P R   PD DID   D 
Sbjct: 408  CKENGI-LAQGRGSAANSAVCYALGVTNVDPVANELLFERFLSPARDGPPDIDIDIESDL 466

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R++ I+YV ++YG +  AQ+    + + ++A+RD+ RAL     Q D   K +       
Sbjct: 467  REQAIQYVYDRYGRDYAAQVANVITYRGRSAIRDMARALGFSQGQQDAWSKQLS------ 520

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                 +AD                +++++ ++  L RH   H+ G+VI DRP++ + P+ 
Sbjct: 521  -KWNGLADSPDIEGIPEP------VVDLALQISNLPRHMGIHSGGMVICDRPIADVCPVE 573

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                ++  V Q++       GL+KFD LGL  L+ L   +D + +   + VDL+ +   +
Sbjct: 574  WARMANRSVLQWDKDDCAAIGLVKFDMLGLGMLSALHYCIDLVREHKGLDVDLAKLDLSE 633

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
               Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI       Y  
Sbjct: 634  PAVYEMLQRADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHPYIK 693

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R+NG+E +   HP +   L++T GV ++QEQ+MQ+A   +G++ +EAD LRRAM  K+  
Sbjct: 694  RRNGEEPVTYDHPSMANALRKTLGVPLFQEQLMQLAVDCAGFTAAEADQLRRAMGSKRST 753

Query: 723  EEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            E+M + + RF  G  + +GI+  +A  I++ L  FA++GF +SH+ ++A + + ++W K 
Sbjct: 754  EKMRRLRGRFYDGMRQRHGITGEVADRIYDKLEAFANFGFPESHSLSFASLVFYSSWFKL 813

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI--YYSL 839
            H+P  F AA +  +       +    DAR+  + +  P VN       +          L
Sbjct: 814  HHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAYATLESAGTEVRLGL 873

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             A++ +G   A  I+E   A+ PF+SL D   RV     +    E+L  AGAL CFG +R
Sbjct: 874  GAVRHIGDDLAERIVEERKANGPFESLLDLTGRVQL---SVPQTEALATAGALGCFGVTR 930

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             + L         A     +R            G+     +L   S          +   
Sbjct: 931  REGLW----AAGAAAAERPDRLPG--------VGSAGQVPSLPGMS---KLELAAADVWA 975

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             G     +P    +  L  MG+      +    G  + +A  V  +Q+  T +G  + ++
Sbjct: 976  TGVSPDSYPTQFLRENLDAMGVIPAGRLLDVPDGTRVLVAGAVTHRQRPATAQG--VTFL 1033

Query: 1019 TFSEPAKEYEANF 1031
               +         
Sbjct: 1034 NLEDETGMVNVVC 1046


>gi|70731058|ref|YP_260799.1| error-prone DNA polymerase [Pseudomonas fluorescens Pf-5]
 gi|78099245|sp|Q4KAD4|DNAE2_PSEF5 RecName: Full=Error-prone DNA polymerase
 gi|68345357|gb|AAY92963.1| DNA polymerase III, alpha subunit, putative [Pseudomonas fluorescens
            Pf-5]
          Length = 1034

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/1045 (27%), Positives = 469/1045 (44%), Gaps = 90/1045 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  L   S++S   GA S   +  +  A    A+AITD   L   +   Q +   G++ 
Sbjct: 3    AYAELHCLSNFSFQRGASSAAELFQRAKALGYQALAITDECTLAGIVRAWQASRDTGLKL 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G ++ ++                  P +VLLV    GYQ L  L++R     + K S 
Sbjct: 63   IVGSEMQVEDG----------------PRLVLLVEDLAGYQGLCRLITRARRRAE-KGSY 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+      E     L +   G+  P+ +                 +++F  RL++ L+ H
Sbjct: 106  RLLREDFAEPLPGLLALWLTGAGEPLAQG-------------RWLQQVFPQRLWLALELH 152

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
             G D  R   Q + LA    LP VA  +            D + A+ H   V++   R  
Sbjct: 153  CGQDDARHLQQQLALARQLGLPAVACGDVHMHVRGRRALQDTMTAIRHHLPVAEAGQRLF 212

Query: 248  VTPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L+    +  ++   P+AL + ++ IA RC+F L       PR +  E  D    
Sbjct: 213  ANGERHLRPVEVLQGLY---PQALLDESLAIAGRCAFDLGQLRYQYPRELVPEGHDAG-- 267

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     G+  R   GA A      +  +++D EL +I  + +  YFL V D + +
Sbjct: 268  --SWLRVLTQRGIVRRWPTGARA------EVLKQIDKELTLICDLGYESYFLTVHDIVDF 319

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++ +I +  GRGS A SV  +AL IT+IDP R +LLFERFL+ +R   PD D+DF  +R
Sbjct: 320  ARRQHI-LCQGRGSAANSVVCFALGITEIDPDRSTLLFERFLSRERNEPPDIDVDFEHER 378

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++Y+  +YG  R A      +     A+RDV +AL +P  QV+ L     +    P
Sbjct: 379  REEVLQYLFQRYGRHRAALTAVVSTYHGAGAVRDVAKALGLPPDQVNALADCCGHWSDTP 438

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             S++ + +           P + R+L ++ +L G  RH S H  G VI ++PL  LVP+ 
Sbjct: 439  PSVERLQE----AGFDPQSPVLRRVLSLTGQLIGFPRHLSQHPGGFVISEQPLDHLVPVE 494

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                ++  V Q++   ++  GL+K D L L  L+ +++  D +   RG +  L+ IP +D
Sbjct: 495  NATMAERTVIQWDKDDLDMVGLLKVDILALGMLSAIRRCFDLIHGYRGQRYSLASIPPED 554

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
              TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +   Y  
Sbjct: 555  PATYEMIGRADTIGVFQIESRAQMSMLPRLKPQNFYDLVIEVAIVRPGPIQGGMVHPYLR 614

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+N +E      P ++ +LK T GV ++QEQVMQIA + + Y+  EAD LRR+M   K  
Sbjct: 615  RRNRQEPETYPSPELEGVLKRTLGVPLFQEQVMQIAIVAADYTPGEADQLRRSMAAWKRH 674

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              ++  +ER   G ++NG S   A  IFE +  F  YGF +SHAA++A+++Y + W+K H
Sbjct: 675  GGLEPHRERLRRGMNRNGYSDEFATQIFEQIKGFGSYGFPESHAASFALLTYASCWLKCH 734

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------------ 830
             P  F  A +           +  QDAR+  +Q++   V     D  +            
Sbjct: 735  EPAAFACALINSWPMGFYSPDQILQDARRHGLQVLAVDVGASDWDCSLEPIPVQPARAGN 794

Query: 831  ---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               G   +   L  IKG     AR I  A   + F  + D   R      + R  E L  
Sbjct: 795  GPPGQPALRLGLRMIKGFREDDARRIERARRQRAFVDIADLGERARL---DVRAQELLAD 851

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGAL      R +    +  +++               +FA         + L + SV  
Sbjct: 852  AGALQALAGDRYRARWEVAGVER------------QLGLFAGLPSQEEAPVALPRPSVGE 899

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                 + +   LG     HPL + +P L     +   + +A   G ++ +A +V  +Q+ 
Sbjct: 900  D---LQADYHSLGTTLGPHPLALLRPQLAARRCRSSRDLLAVEHGRSVSVAGLVTGRQRP 956

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T  G  + +VT  +         +
Sbjct: 957  GTASG--VTFVTLEDEFGNVNVVVW 979


>gi|296161200|ref|ZP_06844009.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1]
 gi|295888541|gb|EFG68350.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1]
          Length = 1049

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/1047 (26%), Positives = 466/1047 (44%), Gaps = 66/1047 (6%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +       P++  L   S+++ L GA     + ++       A+A+TD  +L   +    
Sbjct: 1    MDSTFSTLPAYAELFCFSNFTFLHGASHAEELAERAEQLGYAALAVTDECSLAGVVRAHV 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  A +  I+            ++ N   +P      ++LL    EGY  L EL++   
Sbjct: 61   AAKEAKLPFIV--------GSYFRLVNADGSP---AFGLILLARNREGYGNLSELITLAR 109

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 K   R+    L     E   +        I    F     V   ++      F  
Sbjct: 110  TR-APKGEYRLTPQDLSRPDRENRHLRGLPDCLAILVPDFPAKEDVLAAQVEWLDDTFTG 168

Query: 181  RLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R +V L  H R  D      V  +A   ++P+VA  N +          D + A+     
Sbjct: 169  RAWVGLVLHQRAMDDIHRGSVEFVARNQDVPVVALGNVVMHVRSRKPLQDTMTAIRVRRP 228

Query: 240  VSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            V +         + +L++R  + +++ D  +AL  TV+IA RC+F L       P  +  
Sbjct: 229  VHECGYDLTQNAEQHLRSRLRLANLYPD--DALAATVDIASRCAFSLDELRYEYPDELVP 286

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                        LR +   G + R   G   K       +++++ EL +IA +++  YFL
Sbjct: 287  TGF----TPTAYLRQETYIGAQRRFPSGIPHK------VQEQIEHELELIADLQYEPYFL 336

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
             V D +++A+  +I +  GRGS A S   Y L +T++DP R ++LFERF++ +R   PD 
Sbjct: 337  TVYDIVRFARSQSI-LCQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEPPDI 395

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF   RR+EVI+Y+  KYG +R A      + + + ALR+ G+AL +    VD + K 
Sbjct: 396  DVDFEHQRREEVIQYIYRKYGRDRAAIAAAVSTYRPRGALRETGKALGVDPQIVDVVAK- 454

Query: 479  IPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                 +H     +    +RFRE+ L    P +    +++ +L G  RH S H+ G VI  
Sbjct: 455  -----SHHWFDTSQDLLARFRESGLDPEKPLIQAWAKLASQLLGFPRHLSQHSGGFVISR 509

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK 595
              L++LVP+      D  V +++   +E  GL+K D L L  L+ ++++LD +  QRG +
Sbjct: 510  GKLTRLVPVENAAMEDRSVIEWDKDDLEALGLLKIDVLALGMLSAIRRALDIVSEQRGER 569

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             ++  IP +D +TY +++   T+G+FQ+ES      L  MQP    D++  V++ RPGPI
Sbjct: 570  FEMQDIPAEDPQTYEMISAADTVGVFQIESRAQMSMLPRMQPRTFYDLVIEVAIVRPGPI 629

Query: 656  DNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                   Y  R+ G E +      +   L  T GV I+QEQVMQ+A L +G++  EAD L
Sbjct: 630  QGGAVHPYLQRRQGFEPVSYPSDALKTALGRTLGVPIFQEQVMQVAILAAGFTAGEADQL 689

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM   K K  ++K  +R + G  + G +   A +IFE +  F +YGF +SHAA++A++
Sbjct: 690  RRAMAAWKRKGGLEKYYDRIVHGMQERGYTLAFAESIFEQIKGFGEYGFPESHAASFALL 749

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-- 830
             Y ++W+K H P  FLAA +  +        +  QDA++  ++++P  V     D  +  
Sbjct: 750  VYASSWLKCHEPEAFLAAMLNSQPMGFYSPSQLVQDAQRHGVKVLPVDVTISGWDSALVN 809

Query: 831  ----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                G   +   ++ ++G+    A  I  A A +PF+S+ D   R    + +  VL    
Sbjct: 810  LQGAGRPAVRLGMSLLRGMKDGAAERIENARAVRPFESVNDLARRAQLDRKDLHVL---A 866

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             A AL     +R + L             +        ++ A       +   L   +  
Sbjct: 867  DANALTSLAGNRREALW------------QSVAAVPDRDMLAT-AAVQDETPALGAPTEA 913

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            N  V    + R +G     HPL++ +P L    +           G   R   +V  +Q+
Sbjct: 914  NDIV---ADYRSVGLTLGRHPLELLRPQLLAKRLMPASTLRTYRDGRLARGCGLVTVRQR 970

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              T KG  + +VT  +         +P
Sbjct: 971  PGTAKG--VMFVTLEDETGNVNVIVWP 995


>gi|225631083|ref|ZP_03787815.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of
            Muscidifurax uniraptor]
 gi|225591221|gb|EEH12371.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of
            Muscidifurax uniraptor]
          Length = 797

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/814 (49%), Positives = 561/814 (68%), Gaps = 21/814 (2%)

Query: 197  ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKN 256
            E  ++  AY   +PLVATN+  F +  DYEA+D+L  ++  +   + +R ++T +HY K+
Sbjct: 2    EEALIDFAYQRNIPLVATNDVFFPNRSDYEAYDILTCISEGSYALENNRKKLTTEHYFKS 61

Query: 257  RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             +EM  +FSD+PEA+ NT+ IA+RCS++ +   PILP+F  +E     K E  ELR +AV
Sbjct: 62   VAEMEELFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCREN----KTENEELREQAV 117

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            AGLE R+A          + Y  RL++EL+VI  M ++GYFLIV+DFI+W+K N IPVGP
Sbjct: 118  AGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSKANGIPVGP 174

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ A+ L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD VI YVQ 
Sbjct: 175  GRGSGAGSIVAWGLQITDLDPIKFGLIFERFLNPDRVSMPDFDIDFCQEKRDLVIDYVQK 234

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADD 495
            KYG   VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+L QAI  D
Sbjct: 235  KYG--YVAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVTLSQAIEFD 292

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
               ++ R +D  + +LL+IS KLEG+YRH STHAAGIVI D+ L   VP+Y D  S LP+
Sbjct: 293  QNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYYDPNSALPI 352

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            TQ++MK++EKAGLIKFDFLGL TLTL+      + + G K+D+S +P +D +TY +L++ 
Sbjct: 353  TQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDGKKIDISSVPLNDQKTYEILSSG 412

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
             ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  RK+G EK   IH
Sbjct: 413  DSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHGLEKPDYIH 472

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            PL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEMDKQ+E FI G
Sbjct: 473  PLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEMDKQRELFIQG 532

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A+KNG+    A  IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+EF  A M L 
Sbjct: 533  ATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLEFFTALMNLN 592

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
            +D+ +K+  F   A+   + ++ P +N    +F + D RI Y +AA++ VG + A  I+ 
Sbjct: 593  IDDRDKLNLFYHAAKFSGVTVLSPDINKSQAEFSIEDERIRYGIAALRNVGFSIAEGIVN 652

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
              +      + +F ++     +N+R LESL+ +GA D    +R QL +S+D +  +A   
Sbjct: 653  VHSSAC-KDIWEF-TQNSGHTINKRALESLIKSGAFDSVHKNRKQLYESMDTLIYFANKN 710

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            +++R +    +F         K  LE     +   + E+E   LGFY + HPL+ ++ +L
Sbjct: 711  KQDRESSQAALFGSLDVL---KPKLENVEDFDEEEKLEHELFSLGFYLTNHPLEKFRTLL 767

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             K+ I    E          + A ++++ + + +
Sbjct: 768  EKLNIGFIGE------NRTAKTAGVILNARMRTS 795


>gi|229591045|ref|YP_002873164.1| error-prone DNA polymerase [Pseudomonas fluorescens SBW25]
 gi|229362911|emb|CAY49821.1| putative DNA polymerase III alpha subunit [Pseudomonas fluorescens
            SBW25]
          Length = 1030

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/1036 (27%), Positives = 461/1036 (44%), Gaps = 82/1036 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L   S++S   GA S   + ++       A+AITD   L   +   Q A A  +  
Sbjct: 9    SYAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLAGIVRAWQAAKAVELPL 68

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ I+                  P +VLLV    GYQ L  L++      + K S 
Sbjct: 69   IIGSEVRIENG----------------PKLVLLVEDLSGYQHLCRLITLARRRAE-KGSY 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+ L    +    GL+ L                       +   ++ F +RL++ +  H
Sbjct: 112  RLLLEDFDQ-PLPGLLALWVAEDSDTQ------------ASIQWLRRTFAERLWLAVHLH 158

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
             G D   R  Q + LA +  +P VA  +    +       D + A+ H   V++   R  
Sbjct: 159  CGQDDAHRLEQRLNLAASLRIPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLH 218

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + +L++   + +++      L+ T  IARRC+F L       PR +  E  D     
Sbjct: 219  PNGERHLRSLDALAALYPHA--LLDETQAIARRCTFDLSQLRYHYPRELVPEGHDA---- 272

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+ LR    AG+  R  QG  A         Q++  EL +I+ + +  YFL V D +++A
Sbjct: 273  ESWLRAVTEAGIAQRWPQGVDAHT------LQQIHKELALISELGYESYFLTVHDIVRFA 326

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +I +  GRGS A S   +AL IT+IDP   S+LFERFL+ +R   PD D+DF  +RR
Sbjct: 327  RSRSI-LCQGRGSAANSAVCFALGITEIDPSLTSMLFERFLSKERNEPPDIDVDFEHERR 385

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV  +YG  R A      S  A  A+RDV +AL +P  QV+ L            
Sbjct: 386  EEVLQYVFQRYGRTRAALTAVVSSYHAAGAVRDVAKALGLPPDQVNALADCCGRWSDDAP 445

Query: 488  SLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             L+      R RE       P + R+L ++Q+L G  RH S H  G VI + PL  LVP+
Sbjct: 446  PLE------RLREGGFDPQSPILRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDTLVPV 499

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604
                 ++  + Q++   ++  GL+K D L L  L+ +++  D L   R     L+ +P +
Sbjct: 500  ENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNRDFSLASLPKE 559

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
            D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +   Y 
Sbjct: 560  DPATYAMISKADTIGVFQIESRAQMSMLPRLRPQTFYDLVIEVAIVRPGPIQGGMVHPYL 619

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+N +E+     P ++ +L+ T G+ ++QEQVMQIA + + Y   EAD LRR+M   K 
Sbjct: 620  RRRNKEEETTYPSPELEVVLQRTLGIPLFQEQVMQIAMVAADYGPGEADQLRRSMAAWKR 679

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               ++  +ER  +G  KNG S+  A  IFE +  F  YGF +SHAA++A+++Y + W+K 
Sbjct: 680  HGGLEPHQERLRTGMLKNGYSEEFAAQIFEQIKGFGSYGFPESHAASFALLTYASCWLKC 739

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIY 836
            H P  F  A +           +  QDAR+  +QI P  V     D  +         I 
Sbjct: 740  HEPAAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASDWDCSLEPIDGAQPAIR 799

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  I G+     R I  A     F  + D  +R       + +L     AGAL     
Sbjct: 800  MGLRMIAGLREEEGRRIETARERGVFSDIADLDARAGLDARTQALL---ADAGALRALAD 856

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R +    +  + K               +FA         + L   +V       + + 
Sbjct: 857  NRHKARWEVAGVHK------------QLGLFAGLPSPDEAVVALPAPTVGED---LQADY 901

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              +G     HPL + +  LRK   +  +E +    G N+ +A +V  +Q+  T  G  + 
Sbjct: 902  ATVGTTLGPHPLALLRTELRKRRCRSSQELMLVEHGRNVSIAGLVTGRQRPGTASG--VT 959

Query: 1017 WVTFSEPAKEYEANFF 1032
            +VT  +         +
Sbjct: 960  FVTLEDEFGNLNVVVW 975


>gi|327439235|dbj|BAK15600.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046]
          Length = 1024

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1025 (34%), Positives = 568/1025 (55%), Gaps = 45/1025 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V+ QV +S  LL+  + ++ ++  +   +  + AI +T  L+  L F  +   AGI P++
Sbjct: 3    VYPQVRTSADLLKSTIRIDELIPFLHHQKAKSCAIVNTK-LYGLLPFWFEMKRAGIHPVV 61

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +++ +   +             +VL   T EGY+ L+++ S + +    +    I
Sbjct: 62   GLTIQLELTEEQSLP------------LVLYAKTNEGYRNLLKISSSIAI----RPEQTI 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             L WL   G     M+       I         Q+AE  L  F K + D +Y+ + R   
Sbjct: 106  PLRWLLAYGKGIAFMIPALEQQAIWL------QQMAEPVLAEFMKAYPDEVYIGISRLSD 159

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                 ES  VQLA  + LP+VAT+ SLF +EED+ A++V  A+     ++   +     +
Sbjct: 160  TSSL-ESSAVQLAEKNALPIVATHESLFFNEEDFFAYEVAQAIHTGVKLNDAVQSN-KQE 217

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            ++L    +    F D  + L  +  +   C   L  +   +P+F   E +      EN L
Sbjct: 218  NHLLTAEQWQQKFHDQQQWLVQSENLLLSCQIELNTNNVYMPKFPVGEGE----TAENLL 273

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            + + + GL+ RL    +        Y +R+++EL+VI  M +S YFLIVADF+Q+A++  
Sbjct: 274  QQQVMTGLQRRLNTNTLPGH-----YVERMNYELHVIQSMGYSDYFLIVADFMQFAREAQ 328

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I  GPGRGS A S+ A+AL IT +DPL++ LLFERFLNP+R+++PD DIDF   RR EVI
Sbjct: 329  ILTGPGRGSSASSLVAFALEITQVDPLQYDLLFERFLNPERITLPDIDIDFLDTRRHEVI 388

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YV  KYG + VAQIITFG+L AKA  RDV R        ++ + KLIPN P   +  +A
Sbjct: 389  QYVAKKYGKQYVAQIITFGTLSAKAVARDVARMFNFESEALEMISKLIPNKPGITLK-EA 447

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
             A     R    A+P   +  + S +LEGL R+ASTHAAG+V+   PL  +VP+  +   
Sbjct: 448  YAMSENLRAWITAEPIRQKWFQTSLRLEGLPRNASTHAAGVVLSPVPLVDVVPIE-EGHD 506

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYH 610
             + +TQ+ M+ +E+ GL+K DFLGL+ LT+L++    +      +++ + IP +D +T+ 
Sbjct: 507  GIFLTQWPMQEVEQNGLLKIDFLGLRNLTILEQIRKSIQFTHNRQINFNHIPLNDEKTFE 566

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL    T GIFQLES GM+ AL  ++P    DI+A+ +LYRPGP++ I +Y  RK+ KE+
Sbjct: 567  LLQNGDTNGIFQLESDGMKNALREIKPTHFLDIVAVNALYRPGPMEFIPMYARRKHKKEQ 626

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            ++  HP + P+L+ET GVIIYQEQ+M+IA +++G+S  +AD+LRRA+ KK ++ +++Q+ 
Sbjct: 627  VIMPHPHLTPILEETYGVIIYQEQIMRIANVMAGFSFGQADLLRRAVSKKKRDVLEQQRA 686

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ GA   G ++  A  ++ L+ +FADYGF KSHA AY+VISYQ A++K +YPV F AA
Sbjct: 687  SFVKGALTKGYTQQAAEEVYALIVRFADYGFPKSHAVAYSVISYQMAYLKANYPVNFYAA 746

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +T    N +K+ +   +A+   I+I+PPS+N     FKV   +I +SL+AI+GV     
Sbjct: 747  LLTNATGNPDKLAQILMEAKAKGIEILPPSINRSMRHFKVESGKIRFSLSAIRGVPQPFM 806

Query: 851  RHIMEASADK--PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            + ++ A  ++  PFDS+ D    + +   NR+++E L+ AGALD FG  R  LL +++  
Sbjct: 807  QKLLLAREERQKPFDSIFDLAVTLTTANFNRKIIEPLIKAGALDEFGKDRATLLATIEGA 866

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
            QK A +V        +++F      F  K    + S     ++ + E+ VLGFY S HP+
Sbjct: 867  QKQADFVR----PGGDDLFEGALLAFG-KPKYSETSPIPEKIKLQYEKDVLGFYLSDHPI 921

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
               +    ++     +          +++   V   +Q +T++G  + +V   +      
Sbjct: 922  VKLRSQFPEVTA-TVQTLAQLKDNAFVKIIGQVREMRQLRTKRGELMAFVQMEDEYGTVS 980

Query: 1029 ANFFP 1033
               FP
Sbjct: 981  LTLFP 985


>gi|238029059|ref|YP_002913284.1| DNA polymerase III, alpha subunit [Burkholderia glumae BGR1]
 gi|237880636|gb|ACR32964.1| DNA polymerase III, alpha subunit [Burkholderia glumae BGR1]
          Length = 1049

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/1036 (27%), Positives = 471/1036 (45%), Gaps = 61/1036 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQ  S++S L GA     ++++ A     AIAITD  +L   +    +A AAG+ 
Sbjct: 10   PAYAELQCASNFSFLHGASRAEELVERAARLGYSAIAITDECSLAGVVRAHVEAKAAGLP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    +   D                +   L    EGY  L EL++        K +
Sbjct: 70   LIIGSHFQLTSADG-----------SPALAFTALAMNREGYGNLCELITLARTRGA-KGT 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L+        +        I    F  + Q  + ++  F  +FGDR  V L  
Sbjct: 118  YRLAPLDLEHPEAPLTHLRGLPDCMTILTPDFPANEQRLDAQIEWFAAVFGDRARVALTL 177

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H R  D      V + A  + +P+VAT+  +          DVL A+     V +     
Sbjct: 178  HARAMDDIHRGAVERAAARYGVPVVATSWPVMHVRSRKPLQDVLTAIRLGRSVRECGYEL 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  + +++     ALE TV +ARRC+F L       P     E       
Sbjct: 238  APNAERHLRSRLRLSNLYP--AGALEETVRVARRCTFSLDELRYEYP----DELVPAGYS 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR +   G   R   G           + +++ EL +IA++K+  YFL V D +++
Sbjct: 292  PASYLREQTYIGAHARFPGGI------PFHVQAQIEHELQLIAKLKYEPYFLTVYDIVRF 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  NI +  GRGS A S   Y L +T++DP R ++LFERF++ +R   PD D+DF   R
Sbjct: 346  ARSQNI-LCQGRGSAANSAVCYCLRVTEVDPARGNMLFERFISCERNEPPDIDVDFEHQR 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++Y+  KYG +R A      + + + ALR+ G+AL +    VDR+ K      +  
Sbjct: 405  REEVMQYIYAKYGRDRAALTAAVSTYRPRGALREAGKALGVDPIIVDRVAKAHHWFDSKA 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L   A+        +  P   +    +  L G  RH S H+ G VI    LS++VP+ 
Sbjct: 465  DLLARFAE----AGLDVEAPLNQQWAAFATALLGYPRHLSQHSGGFVISRTKLSRMVPIE 520

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                +D  + Q++   IE  G++K D L L  L++++++L+ +  +RG   +L  IP +D
Sbjct: 521  NAAMADRTIIQWDKDDIEALGILKVDILALGMLSMVRRALEMISEKRGEPFELQDIPPED 580

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
              TY +L    ++G+FQ+ES      L  +QP C  D++  V++ RPGP+   +   +  
Sbjct: 581  AATYAMLCEGDSMGVFQVESRAQMSMLPRLQPRCFYDLVIEVAIVRPGPVQGGMVHPFLR 640

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+ G E +    P ++  LK T GV I+QEQVMQ+A L +G+S  EAD LRRAM   K K
Sbjct: 641  RRQGLEPVTFPSPDVEKALKRTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKRK 700

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              ++    R + G    G  +  A  IF  +  F DYGF +SHAA++A++ Y +AW++ H
Sbjct: 701  GGLEPYHARLVEGMLARGYDRDFAEAIFAQIKGFGDYGFPESHAASFALLVYASAWLRRH 760

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI----YYS 838
             P  FLAA +  +        +  QDAR+ +++I+P  V     D  +  +         
Sbjct: 761  EPGVFLAALLNSQPMGFYTPSQLLQDARRRSVRILPVDVTISTWDSTLEGDTTAAPVRVG 820

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYS 897
            ++ IKG+    A  I  A + +PF  + D   R    + + +VL +   AGAL    G +
Sbjct: 821  MSLIKGMRAEAAARIELARSVRPFADVADLARRAALDRHDLQVLAA---AGALRSLAGGN 877

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R   L           W+        + +   E+   +    L + S         ++ R
Sbjct: 878  RRDAL-----------WLAAAAVPGRDLLRGTERDDAA--PALPQASEGRE---LVSDYR 921

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             +GF    HPL++ +  LR   +    E      G   R   +V  +Q+  T KG  + +
Sbjct: 922  SMGFTLGRHPLELLRARLRTDRLLPAAELAQLRNGQFARACGIVTVRQRPGTAKG--VLF 979

Query: 1018 VTFSEPAKEYEANFFP 1033
            +T  +   +     +P
Sbjct: 980  ITLEDETGQTNVIIWP 995


>gi|168994055|gb|ACA41595.1| DNA polymerase III subunit alpha [Lysinibacillus sphaericus C3-41]
          Length = 1020

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1020 (34%), Positives = 544/1020 (53%), Gaps = 46/1020 (4%)

Query: 17   HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
            H+S  LL+  + L  ++  +   +  A AI +T  L+  L F +    A I  ++G  ++
Sbjct: 2    HTSADLLKSTIRLEQLIPFLLEQKTQACAIVNTK-LYGLLPFCKAMQQAKIHAVMGLSVN 60

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            +   D             T   +VL   + EGYQ+L+++ S   + + G     +   WL
Sbjct: 61   VQWHD-------------TTLPLVLYAQSQEGYQQLLKISSAASIREDG----VLPWKWL 103

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR 196
            +      L +L+      +               +     LF    Y+ + R  G     
Sbjct: 104  EGYAAGCLALLSSDDLAELKDWH---------GVVSALAHLFQHHFYMGITRPGGVALAN 154

Query: 197  ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKN 256
            E+++V+      +PLVA  +  FL  ED+ A++V  A+     +           ++   
Sbjct: 155  ENELVEWCEGQRIPLVAVQSCYFLRPEDHFAYEVARAIDTGDKLGDTMLTAKLQGYFAPT 214

Query: 257  RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
              E  S F+D PE LE   ++   C  I+   +  +P+F       + +  E+ L  +A 
Sbjct: 215  AQEWQSWFTDRPEWLETCGQMLASCRAIIPEMSVQMPKFPVP----VGETAESLLVKEAF 270

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            +GLE R  Q  I  G     YR+RL +EL +I  M F+ YFL+VADF+++AK N I  GP
Sbjct: 271  SGLEERFNQLDIPYG-----YRERLRYELEIICSMGFADYFLVVADFMRFAKDNRILTGP 325

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGS AGS+ AY+L IT +DPL + LLFERFLNP+R+S+PD DIDF   +R +VI+YV  
Sbjct: 326  GRGSSAGSLVAYSLAITQVDPLAYGLLFERFLNPERISLPDIDIDFVDSKRHQVIQYVAQ 385

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            KYG   VAQIITFG+L AKA  RDV R        ++++ K+IPN P   +  +A+ +  
Sbjct: 386  KYGKGNVAQIITFGTLSAKAVARDVARVFGFGAEVLEKISKMIPNKPGITLQ-KALEESY 444

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
              +E    D    R  E++QKLEGL R++STHAAGIVI    L   VP+  D    +  T
Sbjct: 445  DLQEWLSEDHQHQRWFEVAQKLEGLPRNSSTHAAGIVIAPSSLVNTVPIE-DGHEGIYCT 503

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            Q+ M  +E +GL+K DFLGL+ LT+L++         G  +D   IP  D +T+ LL + 
Sbjct: 504  QWPMGDVEASGLVKMDFLGLRNLTILEQIRWSIYKAGGPWIDFERIPMHDEKTFQLLQSG 563

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
             T GIFQLES GM+QAL  + P    DI+A+ +LYRPGP++ I VY  RK GKE +V  H
Sbjct: 564  DTSGIFQLESEGMKQALRDIHPTQFLDIVAVNALYRPGPMEFIPVYARRKAGKELVVMPH 623

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            P+++P+L+ET GVI+YQEQ+++IA +L+G+S+ +AD+LRRA+ KK ++ +++Q+  F+ G
Sbjct: 624  PVLEPILQETFGVIVYQEQIIKIASVLAGFSMGQADLLRRAVSKKNRQVLEEQQVTFVQG 683

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A K G  + +A  ++EL+ +FADYGF KSHA AY++ISYQ A++K H+P  F AA ++  
Sbjct: 684  ALKQGYDQHVATEVYELIVRFADYGFPKSHAVAYSIISYQMAYLKAHFPQSFYAALLSNA 743

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
              NV+KI++  Q+A+   I   PPS+      F V    I YSLA IKGV  T    I  
Sbjct: 744  TGNVDKIQQLVQEAKDKGIPFYPPSLKDSTKYFTVEQEGIRYSLAGIKGVPHTFIESINT 803

Query: 856  ASADKPFD--SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
                 P    +L D    + ++    +V+ESL++AGALD     R  L+ ++D   K+A+
Sbjct: 804  LRQTNPQALYNLFDLAVALSAQHFKPKVIESLIYAGALDYLEKDRAVLIMTIDAALKHAE 863

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
             +   R N+  +I    +  F  K    +        +  +E+  LGFY S HP+   +P
Sbjct: 864  LL---RPNEDIDISTATEFNFG-KPKYMQVDDMPQKEKLIHEKESLGFYISAHPVTQERP 919

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                +      E      G  +++  ++   ++ +T+KG ++ +V   +      A  FP
Sbjct: 920  YWADVNCTS-RELKQMRDGTYVKMIGVMEEVKKIRTKKGEQMAFVQLQDEHGSVSATLFP 978


>gi|325845299|ref|ZP_08168602.1| DNA polymerase III subunit alpha [Turicibacter sp. HGF1]
 gi|325488660|gb|EGC91066.1| DNA polymerase III subunit alpha [Turicibacter sp. HGF1]
          Length = 1010

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/1028 (32%), Positives = 570/1028 (55%), Gaps = 64/1028 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQV S+YSLL  ++ +  ++D    +Q   +A+ +   + SA++F        ++P
Sbjct: 2    SFVHLQVRSAYSLLSSSIKIKELVDLALENQMSCLALVEEGTMHSAIKFYNACRRVNVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG  +++                  +   V+L     GYQRL+++ S +   +      
Sbjct: 62   LIGMSVNV-------------QGDSFIDEWVILARNQCGYQRLLKIASFIAKQEG----- 103

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF---GDRLYVNL 186
             + L        + L+++T G  G +         +  E+RLL + + +      LY+ L
Sbjct: 104  -VVLYEQVLPFVQDLVVITSGEHGMLCS----GIEEYKEERLLQYYESYLKSIPHLYIGL 158

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R           ++  A     P+VA N+  +L +ED +   +L A+  +  V +   P
Sbjct: 159  MRVNQRTYELSKHLISFASNVNRPIVALNDVRYLKKEDAKTLTLLQAIKQNQSVEE--LP 216

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             V  + Y K+  +M  +F+D+P AL  T +IA  C   + +H  +LP++   E       
Sbjct: 217  LVDYERYFKSECQMKELFADVPNALMQTEQIANDCEVEIPLHQSLLPKYQTPEG----VS 272

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ L      GLE R             +Y  RL +EL+VI +M FS YFLIV DF+++
Sbjct: 273  SDSYLEALCFKGLEKRYGHL---------EYANRLKYELSVIHKMGFSDYFLIVWDFVRY 323

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK ++I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF  +R
Sbjct: 324  AKSHDIYVGPGRGSAAGSLVAYVLGITNVDPIKYELLFERFLNPERITMPDIDIDFQDNR 383

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI+YVQNKYG   V QI TFG+ Q+++A RD+ R  Q+  + ++++   I +     
Sbjct: 384  RDEVIQYVQNKYGSHCVVQIATFGTFQSRSAWRDLARVHQVETTLINKVASFIYSGS--- 440

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +L+ I + ++  R+     P ++ + + ++K+EGL RH S HAAG++I D  L+    +
Sbjct: 441  -TLKEIYEQTKGLRDFFSTYPKLEAIYKEAEKIEGLPRHTSIHAAGVIISDHDLTDYTAI 499

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                 + + V+Q+  + +E  GL+K DFLGLK L +LQ+    +      + D++ IP+D
Sbjct: 500  MEGP-TGIYVSQYEAEDLEMIGLLKMDFLGLKNLNMLQQITTLIKSSVAPEFDINKIPYD 558

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY +++   T G+FQLES GMRQ L  ++P+C+EDIIA  +L+RPGP++ I ++  R
Sbjct: 559  DLKTYEMISQGQTTGVFQLESEGMRQVLRAVRPNCLEDIIACNALFRPGPMEGIPLFAAR 618

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+ ++ I   HP +  +L +T G+I+YQEQ+MQIA ++SGYSL EADVLRRA+ KK KE 
Sbjct: 619  KHHEQPIEYYHPSLQYILSKTYGIIVYQEQIMQIANVVSGYSLGEADVLRRAVSKKKKEI 678

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            ++++++ F+  A + G  + IA  ++EL+ KFA+YGFN+SHA AY++I+YQ A++K HYP
Sbjct: 679  LEREQKTFVEKAIERGYHQEIATQLYELILKFANYGFNRSHAVAYSMIAYQMAYLKRHYP 738

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
              F+  +++  + +     ++ ++A+Q +I ++PPS+N+  + +++ +  I +SL  IK 
Sbjct: 739  SYFMTVALSNVIGSESNTAQYVKEAKQLDILVLPPSINSSGLMYQIENENIRFSLLPIKH 798

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G   AR I+       + S  DF SR     LN+R  E L+  GA+D FGY+R  L  +
Sbjct: 799  IGMNLARQIVAERERGLYKSFYDFVSRT-RSFLNQRAYEGLIDVGAMDEFGYNRTTLHHN 857

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L  I  ++++           +F  +      K TL      +S+ + + E+ +LGFY +
Sbjct: 858  LTAILDFSKYD--------GGLFETDFEIMMMKETL------SSAEKMKREKELLGFYLN 903

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+ + +   ++ G     + +  +  + I     V   ++ + +KG  + ++  S+  
Sbjct: 904  SHPIHLMRDQAKEKGWYFPSDLIH-LNVSTITCVGFVEKFREIRDKKGKLMAFMDISDEN 962

Query: 1025 KEYEANFF 1032
                   F
Sbjct: 963  GTVSVTIF 970


>gi|315115543|ref|YP_001699725.2| DNA polymerase III subunit alpha [Lysinibacillus sphaericus C3-41]
          Length = 1027

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1020 (34%), Positives = 544/1020 (53%), Gaps = 46/1020 (4%)

Query: 17   HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
            H+S  LL+  + L  ++  +   +  A AI +T  L+  L F +    A I  ++G  ++
Sbjct: 9    HTSADLLKSTIRLEQLIPFLLEQKTQACAIVNTK-LYGLLPFCKAMQQAKIHAVMGLSVN 67

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            +   D             T   +VL   + EGYQ+L+++ S   + + G     +   WL
Sbjct: 68   VQWHD-------------TTLPLVLYAQSQEGYQQLLKISSAASIREDG----VLPWKWL 110

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR 196
            +      L +L+      +               +     LF    Y+ + R  G     
Sbjct: 111  EGYAAGCLALLSSDDLAELKDWH---------GVVSALAHLFQHHFYMGITRPGGVALAN 161

Query: 197  ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKN 256
            E+++V+      +PLVA  +  FL  ED+ A++V  A+     +           ++   
Sbjct: 162  ENELVEWCEGQRIPLVAVQSCYFLRPEDHFAYEVARAIDTGDKLGDTMLTAKLQGYFAPT 221

Query: 257  RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
              E  S F+D PE LE   ++   C  I+   +  +P+F       + +  E+ L  +A 
Sbjct: 222  AQEWQSWFTDRPEWLETCGQMLASCRAIIPEMSVQMPKFPVP----VGETAESLLVKEAF 277

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            +GLE R  Q  I  G     YR+RL +EL +I  M F+ YFL+VADF+++AK N I  GP
Sbjct: 278  SGLEERFNQLDIPYG-----YRERLRYELEIICSMGFADYFLVVADFMRFAKDNRILTGP 332

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGS AGS+ AY+L IT +DPL + LLFERFLNP+R+S+PD DIDF   +R +VI+YV  
Sbjct: 333  GRGSSAGSLVAYSLAITQVDPLAYGLLFERFLNPERISLPDIDIDFVDSKRHQVIQYVAQ 392

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            KYG   VAQIITFG+L AKA  RDV R        ++++ K+IPN P   +  +A+ +  
Sbjct: 393  KYGKGNVAQIITFGTLSAKAVARDVARVFGFGAEVLEKISKMIPNKPGITLQ-KALEESY 451

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
              +E    D    R  E++QKLEGL R++STHAAGIVI    L   VP+  D    +  T
Sbjct: 452  DLQEWLSEDHQHQRWFEVAQKLEGLPRNSSTHAAGIVIAPSSLVNTVPIE-DGHEGIYCT 510

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            Q+ M  +E +GL+K DFLGL+ LT+L++         G  +D   IP  D +T+ LL + 
Sbjct: 511  QWPMGDVEASGLVKMDFLGLRNLTILEQIRWSIYKAGGPWIDFERIPMHDEKTFQLLQSG 570

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
             T GIFQLES GM+QAL  + P    DI+A+ +LYRPGP++ I VY  RK GKE +V  H
Sbjct: 571  DTSGIFQLESEGMKQALRDIHPTQFLDIVAVNALYRPGPMEFIPVYARRKAGKELVVMPH 630

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            P+++P+L+ET GVI+YQEQ+++IA +L+G+S+ +AD+LRRA+ KK ++ +++Q+  F+ G
Sbjct: 631  PVLEPILQETFGVIVYQEQIIKIASVLAGFSMGQADLLRRAVSKKNRQVLEEQQVTFVQG 690

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A K G  + +A  ++EL+ +FADYGF KSHA AY++ISYQ A++K H+P  F AA ++  
Sbjct: 691  ALKQGYDQHVATEVYELIVRFADYGFPKSHAVAYSIISYQMAYLKAHFPQSFYAALLSNA 750

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
              NV+KI++  Q+A+   I   PPS+      F V    I YSLA IKGV  T    I  
Sbjct: 751  TGNVDKIQQLVQEAKDKGIPFYPPSLKDSTKYFTVEQEGIRYSLAGIKGVPHTFIESINT 810

Query: 856  ASADKPFD--SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
                 P    +L D    + ++    +V+ESL++AGALD     R  L+ ++D   K+A+
Sbjct: 811  LRQTNPQALYNLFDLAVALSAQHFKPKVIESLIYAGALDYLEKDRAVLIMTIDAALKHAE 870

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
             +   R N+  +I    +  F  K    +        +  +E+  LGFY S HP+   +P
Sbjct: 871  LL---RPNEDIDISTATEFNFG-KPKYMQVDDMPQKEKLIHEKESLGFYISAHPVTQERP 926

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                +      E      G  +++  ++   ++ +T+KG ++ +V   +      A  FP
Sbjct: 927  YWADVNCTS-RELKQMRDGTYVKMIGVMEEVKKIRTKKGEQMAFVQLQDEHGSVSATLFP 985


>gi|240173286|ref|ZP_04751944.1| error-prone DNA polymerase [Mycobacterium kansasii ATCC 12478]
          Length = 1100

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/1042 (27%), Positives = 485/1042 (46%), Gaps = 60/1042 (5%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
               +  S ++  L  H++YS L+GA +   ++++ A     A+A+TD N L+ A+ F++ 
Sbjct: 54   NARVRSSAAYAELHAHTAYSFLDGASTPEELVEEAARLDLCALALTDHNGLYGAVRFAEA 113

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A    ++ + G       + +L    + + P P  P +++L    EGY+RL   ++  +L
Sbjct: 114  AAELDMRTVFGA------ELSLGSEARTEQPDPPGPHLLVLARGPEGYRRLSRQLAAAHL 167

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD- 180
                K   R     L E       +LTG   G + +A        A++ L      FG  
Sbjct: 168  AGGEKGKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSEGGPDAAQRALADLVDRFGAY 227

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HST 238
            R+ + L  H    D  R + +  LA    + +VAT  + F           + A+    +
Sbjct: 228  RVSIELTHHGHPLDDERNATLAGLAPRFGVGVVATTGAHFAHPSRSRLAMAMGAIRARQS 287

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            + S           +L++  EM  +F+  PEA+    E+  +C+F L + AP LP F   
Sbjct: 288  LDSAAGWLAPLGGSHLRSGDEMARMFAWRPEAVTAAAELGGQCAFELALIAPQLPPFDVP 347

Query: 299  ECDDIQKEEENELRNKAVAGLEVRL-AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    E++ LR   +AG   R        + Y       ++  EL VIA++KF GYF
Sbjct: 348  ----GGHTEDSWLRQLVMAGARHRYGPPDGAPRAY------AQIGHELKVIAQLKFPGYF 397

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+V D  Q+ ++NNI +  GRGS A S   YAL IT +DP+   LLFERFL+P R   PD
Sbjct: 398  LVVHDITQFCRRNNI-LCQGRGSAANSAVCYALGITAVDPVANELLFERFLSPARDGPPD 456

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             DID   DRR++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K
Sbjct: 457  IDIDIESDRREKVIQYVYDKYGRDYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSK 516

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
             I +                  +A   D   +++++++ ++  L RH   H+ G+VI DR
Sbjct: 517  QISHWNG---------------QAAEVDGIPEQVVDLATQIRNLPRHMGIHSGGMVICDR 561

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKV 596
            P++ + P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+   ++V
Sbjct: 562  PIADVCPVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAMDLVAEHKGLEV 621

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL+ +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI 
Sbjct: 622  DLAKLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLRPRVFYDLVVEVALIRPGPIQ 681

Query: 657  NI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
                  Y  R+NG + +V  HP + P L++T GV ++QEQ+MQ+A   +G++ +EAD LR
Sbjct: 682  GGSVHPYIRRRNGIDPVVYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFTAAEADQLR 741

Query: 715  RAM-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RAM  K+  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A +
Sbjct: 742  RAMGSKRSTERMQRLRGRFYDGMRALHGTRDEVIDRIYEKLEAFANFGFPESHALSFASL 801

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             + +AW K H+P  F AA +  +       +    DAR+  + +  P VN       + +
Sbjct: 802  VFYSAWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVVVHGPDVNASLAHATLEN 861

Query: 833  --NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                +   L A++ +G   A  ++ E +A+ PF SL D  SRV     +    E+L  AG
Sbjct: 862  AGMEVRLGLGAVRHIGDDLAEKLVGERNANGPFASLLDLASRVQL---SVPQTEALATAG 918

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL CFG SR +           A W       +  +         +D   +      +  
Sbjct: 919  ALGCFGMSRRE-----------ALWAAGAAATQRPDRLPGVGAQGADGSHIPVLPGMSEL 967

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 +    G     +P    +  L  MG+   +   +   G+ + +A  V  +Q+  T
Sbjct: 968  ELAAADVWATGISPDSYPTQFLRADLDAMGVLPADALGSVPDGDRVLIAGAVTHRQRPGT 1027

Query: 1010 RKGSRIGWVTFSEPAKEYEANF 1031
             +G  + ++   +         
Sbjct: 1028 AQG--VTFINLEDETGMVNVLC 1047


>gi|145225469|ref|YP_001136147.1| error-prone DNA polymerase [Mycobacterium gilvum PYR-GCK]
 gi|145217955|gb|ABP47359.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium gilvum
            PYR-GCK]
          Length = 1087

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/1036 (26%), Positives = 481/1036 (46%), Gaps = 60/1036 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            +S  +  L  HS+YS L+GA +   ++++ +     A+A+TD + L+  + F++ A    
Sbjct: 48   RSMPYAELHAHSAYSFLDGASTPEELVEEASRLGLRALALTDHDGLYGVVRFAEAAKELD 107

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +  + G +L +       +      P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 108  VDTVFGAELSLGGGTRTDV------PDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 161

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
              +R     L E       +LTG   G + +A        AE  L      F  +R+ V 
Sbjct: 162  GVLRYDFDALTEAAGGHWQILTGCRKGHVRQALLRGGDSAAEAALADLVDRFGRERVTVE 221

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK- 243
            L  H    D  R + +  LA    L ++AT  + F           + A+     + +  
Sbjct: 222  LTHHGHPLDDERNAALAALAPRFGLTVIATTAAHFAEPSRGRLAMAMGAIRARNSIDEAA 281

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++  EM  +F+  PE +    ++  +C+F L + AP LP F        
Sbjct: 282  GYLAPLGGSHLRSGEEMARVFAHCPEVVTAAADLGEQCAFGLALIAPQLPPFEVPAG--- 338

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E + LR+  + G   R   G   +   A     +++ EL VI ++ F GYFL+V D 
Sbjct: 339  -HTENSWLRHLVMQGARERY--GPPERASRA---YAQIEHELRVIEQLNFPGYFLVVHDI 392

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             ++ ++N I +  GRGS A S   YAL +T++DP+   LLFERFL+P R   PD DID  
Sbjct: 393  TRFCRENAI-LSQGRGSAANSAVCYALKVTNVDPIANGLLFERFLSPARDGPPDIDIDIE 451

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D R++ I+YV  +YG E  AQ+    + + ++A+RD+ RAL     Q D   K I    
Sbjct: 452  SDLREKAIQYVYERYGREYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQISQW- 510

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                            +A   +   + +++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 511  ------------GNLADATHVEDIPEPVIDLAMQISHLPRHMGIHSGGMVICDRPIADVC 558

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+   ++VDL+ + 
Sbjct: 559  PVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGLEVDLAKLD 618

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VV 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI       
Sbjct: 619  LSEPAVYEMLQRADSVGVFQVESRAQMATLPRLKPRMFYDLVVEVALIRPGPIQGGSVHP 678

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+NG+E +   HP ++  L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K
Sbjct: 679  YIKRRNGQEPVTYEHPSMERALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 738

Query: 720  KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E+M + + RF  G ++ +GIS  +A  I+E L  FA++GF +SH+ ++A + + ++W
Sbjct: 739  RSTEKMRRLRGRFFEGMAELHGISGDVARRIYEKLEAFANFGFPESHSLSFASLVFYSSW 798

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IY 836
             K H+P  F AA +  +       +    DAR+  + +  P VN       + ++   + 
Sbjct: 799  FKLHHPAAFCAALLRAQPMGFYSPQTLVADARRHGVDVHGPDVNASLAHATLENHGLDVR 858

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L +I+ +G   A+ ++E    + PF SL D   RV          E+L  AGAL CFG
Sbjct: 859  LGLGSIRHIGDELAQRLVEDRKLNGPFVSLTDLTRRVQLT---VPQTEALATAGALGCFG 915

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R + L +       A     +R            G+ S   +L   +          +
Sbjct: 916  ITRREGLWAAG----AAATERPDRLPG--------VGSSSQVPSLPGMTE---LELTAAD 960

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +P +  +  L  MG+   +  ++   G  + +A  V  +Q+  T +G  +
Sbjct: 961  VWATGVSPDRYPTEFLREDLDAMGVVPADRLLSVRDGTRVLVAGAVTHRQRPATAQG--V 1018

Query: 1016 GWVTFSEPAKEYEANF 1031
             ++   +         
Sbjct: 1019 TFLNLEDETGMVNVLC 1034


>gi|254247148|ref|ZP_04940469.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
 gi|124871924|gb|EAY63640.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
          Length = 1067

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/1046 (25%), Positives = 450/1046 (43%), Gaps = 64/1046 (6%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +       P++  L   S+++ LEGA     ++ + A      IAITD  +L   +    
Sbjct: 19   MNTLPLSLPAYAELFCLSNFTFLEGASHAEELVKRAAQLGYSGIAITDECSLAGVVRAHV 78

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A       +I            K+T    +P      ++LL    EGY  L EL++   
Sbjct: 79   AAKDLNFPLVI--------GSYFKLTQADSSP---ALDLILLAQNREGYGNLSELITLAR 127

Query: 121  LLDQGKQSVRICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +              L+ E     L  + G  +  I +  F    +  + ++    + F 
Sbjct: 128  MRSPKGGYCLTPQDLLKPEKAYAHLRGMPGCLAILIPK--FPAKPEALDAQVEWLLETFP 185

Query: 180  DRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             R +V L  H R  D      V  +AY + +P+VA  +            D + A+    
Sbjct: 186  GRAWVGLCLHQRAMDNPHAGVVEHIAYGNGVPVVAVGHVTMHVRSRKPLQDTMTAIRIGK 245

Query: 239  VVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V++         + +L++R  +  +    P AL  TV I  RC F L       P    
Sbjct: 246  PVAECGYELAPNAEQHLRSRMRLAHL--HHPNALNETVAILSRCGFSLDELRYEYP---- 299

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E           LR +   G   R + G         + + +L+ EL +I  + +  YF
Sbjct: 300  DELVPAGLTPTEYLRQETYIGAHRRFSNGI------PLNVQAQLEHELELITELSYEPYF 353

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D +++A+   I +  GRGS A S   Y L IT++DP R ++LFERF++ +R S PD
Sbjct: 354  LTVYDIVKFARSEGI-LCQGRGSAANSAVCYCLGITEVDPARSTMLFERFISRERNSPPD 412

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF   +R+ V++Y+  KYG +R A      + +A+  LRDVG+A+ +    VDR+ K
Sbjct: 413  IDVDFEHQKREIVMQYIYRKYGRDRAAIAAAVSTYRARGVLRDVGKAVGVDAQIVDRVAK 472

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                       L+  ++         + P +     ++ +L G  RH S H+ G VI   
Sbjct: 473  AHHWFDGTADLLERFSESG----LDPSAPIIQTWASLAAQLCGFPRHLSQHSGGFVISRG 528

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKV 596
             LS+LVP+      D  V Q++   +E  GL+K D L L  L++++++LD ++  RG   
Sbjct: 529  KLSRLVPIENAAMQDRSVIQWDKDDLESLGLLKVDVLALGMLSVIRRALDLISLHRGEPF 588

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            ++  IP +D ETY +++   T+G+FQ+ES   +  L  ++P    D++  V++ RPGPI 
Sbjct: 589  EMQDIPSEDPETYDMISNADTVGVFQIESRAQQSMLPRLKPRTFYDLVIEVAIVRPGPIQ 648

Query: 657  NI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
                  Y  R+ G + +      ++  L  T GV I+QEQVMQ+A L +G+S  EAD LR
Sbjct: 649  GGAVHPYLKRRQGIDPVSYPSKDLETALARTLGVPIFQEQVMQVAILAAGFSPGEADGLR 708

Query: 715  RAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RAM   K K  ++   +R +SG    G  +  A  IF  +  FADYGF +SHAA++A++ 
Sbjct: 709  RAMAAWKRKGGLEPYHDRLVSGMLMRGYEREFAEAIFAQIKGFADYGFPESHAASFALLV 768

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y ++W+K H P  FL + +  +        +  QDA++  + ++P  V     +  +   
Sbjct: 769  YVSSWLKCHEPEAFLVSLLNSQPMGFYSPSQLIQDAKRHGVTVLPADVAISNWESSLEYP 828

Query: 834  R------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +   L+ + G+    A  I  A A +PF S  D   R    + +  VL     
Sbjct: 829  EAGCRPVVRLGLSLLHGMRAEAADRIEMARAVEPFSSTIDLARRAQLDRHDLHVL----- 883

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
                     +R   L SL   ++ A W          ++ A                  +
Sbjct: 884  ---------ARSDALASLAGGRRSALWESVVAAPDK-DLLASANVVDET----PDLGWAS 929

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                 +++ + +G     HPL + +P+L    +           G   R   +V  +Q+ 
Sbjct: 930  EGEEIQSDYQSMGLTLRRHPLALLRPMLHAKKLMPAATLNTYPNGRLARACGLVTVRQRP 989

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T KG  + +VT  +         +P
Sbjct: 990  GTAKG--VIFVTLEDETGNVNVIIWP 1013


>gi|315038186|ref|YP_004031754.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL 1112]
 gi|312276319|gb|ADQ58959.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL 1112]
          Length = 1035

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/1024 (32%), Positives = 530/1024 (51%), Gaps = 44/1024 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    + +++         A+ + D N  +  + F + A   GI+P++G 
Sbjct: 6    LQNLSSFTLLDSPTKVADLIKTAKEKGYSAVGLADINVTYGLVNFYEIAKKEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
            Q+ ++          G         +++   T  GY  L+ L S + LL + G+    + 
Sbjct: 66   QIRLN----------GLIDSTQKYDLLVFAKTNAGYHNLLRLSSAINLLTENGQNDKILT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +   + L+++   +   +    F  + Q+    L   KK+  D  Y+ +   +  
Sbjct: 116  LKELTKYLEDLLVIIPANTRSEL-VYLFETNQQLGSDYLRDLKKIVPD-FYLGVYAAKNA 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPRVTPD 251
             +     V  L+   +LPLVA  +S +L   D      L A+     +       +    
Sbjct: 174  -QDYLDYVRSLSKQFDLPLVAVEDSEYLRPRDQFLQKTLRAIRSGQKMQDMVPLAKQDGS 232

Query: 252  HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HY+ +  +M+  +   DL +A+ NT +IA +C+  +    P+LP++ + +        E 
Sbjct: 233  HYMVDAEQMLERYHRFDLDDAVNNTAKIAEKCNAEVIFQKPVLPKYHQNKFP----TSEE 288

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L   A  GL+ R  Q  I       +Y++RL++EL +I +M F  YFLIV D I +  +
Sbjct: 289  YLHYLAQTGLQARFGQEKI-----PAEYQKRLNYELRIINQMGFDDYFLIVWDVINYCHR 343

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS  GS+ +Y+L IT++DPL++ LLFERFLNP R  MPD D+D     RD 
Sbjct: 344  VKITTGPGRGSACGSLVSYSLRITEVDPLKYHLLFERFLNPARHEMPDIDLDIPDIHRDT 403

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   +V++  + IP         
Sbjct: 404  VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEVNKWVRAIPFSKGKMTLK 463

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            QA  +    R    A      L   +  LEGL RH S HAAG+VI D  ++ +  +    
Sbjct: 464  QAYEESRELRLLVDATEENKLLFRTAMALEGLPRHYSIHAAGLVISDDSIAGISGLQAGP 523

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ   K++E  GL+K DFLGL+ LT+L   LD +  +GVK+D + IP +D +T 
Sbjct: 524  L-GIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILDLVRSQGVKIDPNKIPLNDAKTL 582

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  IFQ ES G+R+ L  + PD  ED++A+ +LYRPGP+ NI  +  RKNGKE
Sbjct: 583  ELFQQGKTDAIFQFESEGIRRVLRQLHPDNFEDLVAVNALYRPGPMQNIDTFVARKNGKE 642

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +    P +  +L+ T G+++YQEQVMQ AQ+L+ +SL EAD+LRRAM KK ++ ++++K
Sbjct: 643  PVRYPDPSLKQILQPTYGILVYQEQVMQTAQILARFSLGEADILRRAMSKKKQDVIEQEK 702

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI+G  KNG SK +   ++  + +FA+YGFN+SHA AY  I++  A++K HYP  F  
Sbjct: 703  SKFIAGVVKNGHSKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFYT 762

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +        K +++   A++ NI+++ P +N   +++ + +N I   L AIKG+    
Sbjct: 763  AMLNSSTSA--KAQQYVMQAQEANIRVLTPDINHSQLEYTLQNNNILVGLKAIKGLRVDF 820

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A+ I  A+  KP+ SL DF  R+DSK L    +E+L+ AGA D    +R +LL +  +I 
Sbjct: 821  AKEI--AANTKPYKSLSDFLRRIDSKFLQIDAIEALIMAGAFDQIEDNRNELLANCKDII 878

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               Q   +N      ++             L+   +  +  + E E++VLGF  +  PL 
Sbjct: 879  ANVQLTGQN-----ISL-----SEILGDAPLKPAEIPTNGEKAEMEEKVLGFATTTTPLV 928

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K       +      G  +     ++S ++ +T+    + +  F++ + + E 
Sbjct: 929  AVQKYAQKFNALPLNQFQFNESGIGV---GKLMSLKRIRTKNDKTMAFAGFADSSSQQEV 985

Query: 1030 NFFP 1033
              FP
Sbjct: 986  IIFP 989


>gi|126651370|ref|ZP_01723577.1| DNA polymerase III DnaE [Bacillus sp. B14905]
 gi|126591899|gb|EAZ85982.1| DNA polymerase III DnaE [Bacillus sp. B14905]
          Length = 1020

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1020 (33%), Positives = 540/1020 (52%), Gaps = 46/1020 (4%)

Query: 17   HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
            H+S  LL+  + L  ++  +   +  A AI +T  L+  L F +    A I  +IG  ++
Sbjct: 2    HTSADLLKSTIRLEQLIPFLQEQKTQACAIVNTK-LYGLLPFCKAMQQANIHAVIGLSIN 60

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            +   D                 +VL   + EGYQ L+++ S + + +       +   WL
Sbjct: 61   VQWHD-------------KTFPLVLYAQSQEGYQHLLKISSAVSIREDE----VLPWKWL 103

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR 196
            +      L +L+    G +            +  +     LF    Y+ + R  G  +  
Sbjct: 104  KGYAAGCLALLSSDDIGDVKDW---------QALVSALAHLFQHHFYMGITRPGGVTQAN 154

Query: 197  ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKN 256
            E ++++      +PLVA  +  FL  +D+ A++V  A+     +           ++   
Sbjct: 155  EKELIEWCEGQAIPLVAVQSCYFLRPDDHFAYEVARAIDTGDKLGDTMLTANLQGYFAPT 214

Query: 257  RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
              E  S F+D PE LE+  ++   C  I+   +  +P+F       + +  E+ L  +A 
Sbjct: 215  AQEWQSWFADRPEWLESCGQMLASCHAIIPEMSVQMPKFPVP----VGETAESLLVKEAF 270

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            AGLE R  Q  I  G     YR+RL +EL +I  M ++ YFL+VADF+++AK N I  GP
Sbjct: 271  AGLEGRFNQMDIPNG-----YRERLQYELEIICSMGYADYFLVVADFMRFAKDNRILTGP 325

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGS AGS+ AY+L IT +DPL + LLFERFLNP+R+S+PD DIDF   +R +VI+YV  
Sbjct: 326  GRGSSAGSLVAYSLAITQVDPLAYGLLFERFLNPERISLPDIDIDFVDSKRHQVIQYVAQ 385

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            KYG   V QIITFG+L AKA  RDV R        ++++ K+IPN P   +  +A+ +  
Sbjct: 386  KYGKANVGQIITFGTLSAKAVARDVARVFSFGAETLEKISKMIPNKPGITLQ-KALEESY 444

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
              +     D    R  +++ KLEGL R++STHAAG+VI   PL   VP+  D    +  T
Sbjct: 445  DLQGWLSEDEQHQRWFDVALKLEGLPRNSSTHAAGVVIAPSPLVNTVPIE-DGHEGIYCT 503

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            Q+ M  IE  GL+K DFLGL+ LT+L++         G  +D   IP  D +T+ LL   
Sbjct: 504  QWPMGDIEACGLVKMDFLGLRNLTILEQMRWSIYKAGGPWIDFERIPMHDEKTFQLLQKG 563

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
             T GIFQLES GM+QAL  + P    DI A+ +LYRPGP++ I VY  RK GKE +V  H
Sbjct: 564  DTSGIFQLESEGMKQALRDIHPTHFLDIAAVNALYRPGPMEFIPVYAKRKAGKEMVVMPH 623

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            P+++P+L+ET GVI+YQEQ+++IA +L+G+S+ +AD+LRRA+ KK ++ +++Q+  F+ G
Sbjct: 624  PVLEPILQETFGVIVYQEQIIKIASVLAGFSMGQADLLRRAVSKKNRQVLEEQQVSFVQG 683

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A K G  + +A  ++EL+ +FADYGF KSHA AY+VISYQ A++K H+P  F AA ++  
Sbjct: 684  ALKQGYDQQVATEVYELIVRFADYGFPKSHAVAYSVISYQMAYLKAHFPQSFYAALLSNA 743

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
              N++KI++  Q+A+   I   PPS+      F V    I YSL+ IKGV  T   +I  
Sbjct: 744  TGNIDKIQQLVQEAKDKGIPFYPPSLKDSTKYFTVEQEGIRYSLSGIKGVPHTFIENIHT 803

Query: 856  ASADKPFD--SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
                 P    +L D    + ++    +V+E+L++AGALD     R  L+ ++D   K+A+
Sbjct: 804  LRQSNPLALHNLFDLAVALSAQHFKPKVIEALIYAGALDYLEKDRAVLIMTIDAALKHAE 863

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
             +   R  +  +I    + +F  K    +        +  +E+  LGFY S HP+   + 
Sbjct: 864  LL---RPTEDIDISTATEFSFG-KPKYMQVDDMPQKEKLMHEKESLGFYISAHPVTQERL 919

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                +      E      G  +++  ++   ++ +T+KG ++ +V   +      A  FP
Sbjct: 920  YWADVN-STCRELKQMRDGTYVKMIGVIEEVKKIRTKKGEQMAFVQLQDEHGAVSATLFP 978


>gi|293376148|ref|ZP_06622394.1| putative DNA polymerase III DnaE [Turicibacter sanguinis PC909]
 gi|292645221|gb|EFF63285.1| putative DNA polymerase III DnaE [Turicibacter sanguinis PC909]
          Length = 1010

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/1028 (32%), Positives = 569/1028 (55%), Gaps = 64/1028 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQV S+YSLL  ++ +  ++D    +Q   +A+ +   + SA++F        ++P
Sbjct: 2    SFVHLQVRSAYSLLSSSIKIKELVDLALENQMSCLALVEEGTMHSAIKFYNACRRVNVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG  +++                  +   V+L     GYQ L+++ S +   +      
Sbjct: 62   LIGMSVNV-------------QGDSFIDEWVILARNQCGYQGLLKIASFIAKQEG----- 103

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF---GDRLYVNL 186
             + L        + L+++T G  G +         +  E+RLL + + +      LY+ L
Sbjct: 104  -VVLYEQVLPFVQDLVVITSGEHGMLCS----GIEEYKEERLLQYYESYLKSIPHLYIGL 158

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R           ++  A     P+VA N+  +L +ED +   +L A+  +  V +   P
Sbjct: 159  MRVNQRTYELSKHLISFASNVNRPIVALNDVRYLKKEDAKTLTLLQAIKQNQSVEE--LP 216

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             V  + Y K+  +M  +F+D+P AL  T +IA  C   + +H  +LP++   E       
Sbjct: 217  LVDYERYFKSECQMKELFADVPNALMQTEQIANDCEVEIPLHQSLLPKYQTPEG----VS 272

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ L      GLE R             +Y  RL +EL+VI +M FS YFLIV DF+++
Sbjct: 273  SDSYLEALCFKGLEKRYGHL---------EYANRLKYELSVIHKMGFSDYFLIVWDFVRY 323

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK ++I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF  +R
Sbjct: 324  AKSHDIYVGPGRGSAAGSLVAYVLGITNVDPIKYELLFERFLNPERITMPDIDIDFQDNR 383

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI+YVQNKYG   V QI TFG+ Q+++A RD+ R  Q+  + ++++   I +     
Sbjct: 384  RDEVIQYVQNKYGSHCVVQIATFGTFQSRSAWRDLARVHQVETTLINKVASFIYSGS--- 440

Query: 487  VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +L+ I + ++  R+     P ++ + + ++K+EGL RH S HAAG++I D  L+    +
Sbjct: 441  -TLKEIYEQTKGLRDFFSTYPKLEAIYKEAEKIEGLPRHTSIHAAGVIISDHDLTDYTAI 499

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                 + + V+Q+  + +E  GL+K DFLGLK L +LQ+    +      + D++ IP+D
Sbjct: 500  MEGP-TGIYVSQYEAEDLEMIGLLKMDFLGLKNLNMLQQITTLIKSSVAPEFDINKIPYD 558

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY +++   T G+FQLES GMRQ L  ++P+C+EDIIA  +L+RPGP++ I ++  R
Sbjct: 559  DLKTYEMISQGQTTGVFQLESEGMRQVLRAVRPNCLEDIIACNALFRPGPMEGIPLFAAR 618

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+ ++ I   HP +  +L +T G+I+YQEQ+MQIA ++SGYSL EADVLRRA+ KK KE 
Sbjct: 619  KHHEQPIEYYHPSLQYILSKTYGIIVYQEQIMQIANVVSGYSLGEADVLRRAVSKKKKEI 678

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            ++++++ F+  A + G  + IA  ++EL+ KFA+YGFN+SHA AY++I+YQ A++K HYP
Sbjct: 679  LEREQKTFVEKAIERGYHQEIATQLYELILKFANYGFNRSHAVAYSMIAYQMAYLKRHYP 738

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
              F+  +++  + +     ++ ++A+Q +I ++PPS+N+  + +++ +  I +SL  IK 
Sbjct: 739  SYFMTVALSNVIGSESNTAQYVKEAKQLDILVLPPSINSSGLMYQIENENIRFSLLPIKH 798

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G   AR I+       + S  DF SR     LN+R  E L+  GA+D FGY+R  L  +
Sbjct: 799  IGMNLARQIVAERERGLYKSFYDFVSRT-RSFLNQRAYEGLIDVGAMDEFGYNRTTLHHN 857

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L  I  ++++           +F  +      K TL      +S+ + + E+ +LGFY +
Sbjct: 858  LTAILDFSKYD--------GGLFETDFEIMMMKETL------SSAEKMKREKELLGFYLN 903

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+ + +   ++ G     + +  +  + I     V   ++ + +KG  + ++  S+  
Sbjct: 904  SHPIHLMRDQAKEKGWYFPSDLIH-LNVSTITCVGFVEKFREIRDKKGKLMAFMDISDEN 962

Query: 1025 KEYEANFF 1032
                   F
Sbjct: 963  GTVSVTIF 970


>gi|307289993|ref|ZP_07569918.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0411]
 gi|306498951|gb|EFM68444.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0411]
          Length = 1109

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/1032 (31%), Positives = 520/1032 (50%), Gaps = 56/1032 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +    +            ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEKEGHSE-----------LLLFAKNLKGYQQLMQLSSSKMTTEGPFYLA 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
                S L +     L  +T  + G + +  FF   Q A          F  + L+V    
Sbjct: 111  E-HQSLLSD-----LFAVTLSAKGEVAQ-TFFEDEQQAVHAFQQLASYFDPQSLFVEHSF 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
                ++ R   +       +LP VA      L++E+  A  VL ++  +  ++   + P 
Sbjct: 164  --SMNQQRNPALFSFYQREQLPGVALQEVRHLTKEEGFAVTVLESIKENNQLNITSQTPE 221

Query: 248  VTPDHYLKNRSE-MVSIFSDLP-EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +   +YL+     M  I      E ++NT+++A  C   + +H  +LP F         +
Sbjct: 222  IEGLNYLREAETTMEQILQIAGAEVVQNTIQLAGNCRVDIPLHQKLLPHFPV----LANQ 277

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D + 
Sbjct: 278  TAGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMD 330

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +
Sbjct: 331  FCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDN 390

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN    
Sbjct: 391  RREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKI 450

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LVP+
Sbjct: 451  TLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPL 509

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
                  ++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP +
Sbjct: 510  QPGSN-EILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLN 568

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+  R
Sbjct: 569  DETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRR 628

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ 
Sbjct: 629  KKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDV 688

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP
Sbjct: 689  LDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYP 748

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843
              F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  +++K
Sbjct: 749  SAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLK 808

Query: 844  GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            G+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R QL 
Sbjct: 809  GIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLA 868

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              L++  +         +    ++    K    +              ++      LG Y
Sbjct: 869  VGLESNIQSILL-----SGGSMDLLETLKPKEEEIADYPLEERLEQEEQY------LGVY 917

Query: 963  FSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             SGHP + +K   L K      +     +     +L   V + +  +T+KG ++ +V   
Sbjct: 918  LSGHPTEEFKKTRLAKQT----QLVHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGD 973

Query: 1022 EPAKEYEANFFP 1033
            +         FP
Sbjct: 974  DTTGSISLTLFP 985


>gi|225182038|ref|ZP_03735469.1| DNA polymerase III, alpha subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225167251|gb|EEG76071.1| DNA polymerase III, alpha subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 1022

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/1029 (33%), Positives = 545/1029 (52%), Gaps = 51/1029 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL+V S YS L GA  L +++ +      PAIA+ D   L  A+ F+  A   GI+P
Sbjct: 2    TFVHLRVKSEYSFLRGACRLEDLVARARELGMPAIALVDYGVLHGAVRFTNLARQYGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +                   P    +VLLV    G+Q L+ LV+R+ L     +S 
Sbjct: 62   ILGAEF----------------SLPCGLPLVLLVRDRTGWQNLVRLVNRVQLARP--RSD 103

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + + W+ E    GL  +     G   R     S Q   + L   + +FG  +Y+ L+  
Sbjct: 104  TLDMGWIAEDAA-GLTAVLPAGGGETVR-----SRQSYIQALEQLQPVFGCEVYLGLEDG 157

Query: 190  RGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                  R++++V ++A    +PLVAT+N  ++   D E + ++  +     ++   R  +
Sbjct: 158  GLPGTKRQNELVAKVAEGKNVPLVATHNVHYVLPGDDEVYRMVNCIRTGRPLAGAGRSFL 217

Query: 249  TPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +YL   +EM   F+    A ENT+++A+RC+FIL+     LP F++++C   ++  
Sbjct: 218  PGAAYYLPAPAEMHRRFAAFSGACENTLDLAKRCTFILEQEGMQLPAFLQQDC---KEPA 274

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E  LR   + G++ R  + A A          RL+ EL VI     S YFLIV D + +A
Sbjct: 275  EAVLRRLCLEGMQRRGLENAEAYR--------RLERELAVIIPKGLSAYFLIVHDLVSYA 326

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +K NI VGPGRGS  GS+ AY L I  +DPL   L FERFL+ DR   PD D+D CQ RR
Sbjct: 327  RKQNISVGPGRGSAGGSLVAYLLGIIQVDPLAHGLYFERFLSEDRSGFPDIDLDVCQRRR 386

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +E++ Y++++YG   VAQ+  F +L A+AA+R+VG+ L M   ++  + + +P       
Sbjct: 387  EELLGYLRDRYGQGYVAQVSAFSTLGARAAVREVGKVLDMTGEKISTVAEALPYYAGRGG 446

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A+     F  A+L D     +L  +++LEGL RH STHA+G++IGD  L + +P+ R
Sbjct: 447  IEAAVGQYPEFMSAKLRDEDSGTVLAGARRLEGLCRHLSTHASGVIIGDGNLQEALPLCR 506

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                ++ +TQ++   +E+ G +K D LG + LT+   +L ++ +R    +    IP DD 
Sbjct: 507  GPAGEV-LTQWDKDDVEEMGFLKIDVLGSRNLTIAHDALSWVRKRHGTTLVAEEIPLDDE 565

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
            +TY +L    +LG FQLES GMR+ L  + P  +ED+I L+SLYRPGP ++ +V  +  R
Sbjct: 566  DTYAMLRRGESLGCFQLESVGMRRVLRRLAPQRLEDLIHLLSLYRPGPWESGLVESFIAR 625

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++G+E +  +HPL+  +L ET GV++YQEQVMQ+A  L GY+  EAD LRR M +++   
Sbjct: 626  RHGREDMSGVHPLLTGILAETYGVVLYQEQVMQVACELGGYTPGEADGLRREMSRRLPSL 685

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
             +  + +F++GA K G+S+  A ++F  L +FA Y FNK+H+AAYA++SY TA++K HYP
Sbjct: 686  QEFHQPKFVAGAVKRGLSRAEAEDVFTHLCRFAGYSFNKAHSAAYALVSYWTAYLKKHYP 745

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEF AA ++           + ++A    + ++PP VN   + F      I  +L  ++ 
Sbjct: 746  VEFYAALLSS-GSGYYATAVYVREAAIRGVPVLPPHVNHSGLSFVPEKEAIRSALPVVRD 804

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G   A  ++EA    PF SL DFC RV    L R  L +L+ AGA    G +R Q L S
Sbjct: 805  LGARAAEALLEAQKKGPFMSLHDFCCRVGRSALRRSALVNLIKAGAFAGLGRNRRQALAS 864

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            LD++ K+      +R     ++         ++  +      +       E   LG   S
Sbjct: 865  LDHVLKW-----TDRQPGQLSLL----DLMPEESAVPALPDFSWPEVVAAELETLGMALS 915

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HPL  YK  L+ +  +          G  + +A  V+ + +++ ++G  +  +  S+ +
Sbjct: 916  DHPLACYKKQLQSVSREPLCNLCNLPVGTKVTVAGTVMGRTRRRLKQGGVMLTLFISDES 975

Query: 1025 KEYEANFFP 1033
               EA F+P
Sbjct: 976  GFAEAVFYP 984


>gi|289555649|ref|ZP_06444859.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            KZN 605]
 gi|289440281|gb|EFD22774.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            KZN 605]
          Length = 1094

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1040 (27%), Positives = 486/1040 (46%), Gaps = 62/1040 (5%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + +  S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A
Sbjct: 53   ERVGSSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAA 112

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                ++ + G       + +L  T + + P P  P +++L    EGY+RL   ++  +L 
Sbjct: 113  AELDVRTVFGA------ELSLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLA 166

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-R 181
               K   R     L E       +LTG   G + +A        A++ L      F   R
Sbjct: 167  GGEKGKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSR 226

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TV 239
            + + L  H    D  R + +  LA    + +VAT  + F           + A+    ++
Sbjct: 227  VSIELTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSL 286

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             S           +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +
Sbjct: 287  DSAAGWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPD 346

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E++ LR+  +AG   R      A   ++     +++ EL VIA+++F GYFL+
Sbjct: 347  G----HTEDSWLRSLVMAGARERYGPPKSAPRAYS-----QIEHELKVIAQLRFPGYFLV 397

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D  ++ + N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D
Sbjct: 398  VHDITRFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDID 456

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID   D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K +
Sbjct: 457  IDIESDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQV 516

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +                  +A   D   +++++++ ++  L RH   H+ G+VI DRP+
Sbjct: 517  SHWTG---------------QADDVDGIPEQVIDLATQIRNLPRHLGIHSGGMVICDRPI 561

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            + + P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VDL
Sbjct: 562  ADVCPVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDL 621

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   
Sbjct: 622  ARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGG 681

Query: 659  --VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
                Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRA
Sbjct: 682  SVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRA 741

Query: 717  M-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            M  K+  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + +
Sbjct: 742  MGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVF 801

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             +AW K H+P  F AA +  +       +    DAR+  + +  P VN         +  
Sbjct: 802  YSAWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAG 861

Query: 835  I--YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
                  L A++ +G   A  ++    A+ PF SL D  SRV     +   +E+L  AGAL
Sbjct: 862  TEVRLGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRVQL---SVPQVEALATAGAL 918

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
             CFG SR           +         T + + +      +      +      +    
Sbjct: 919  GCFGMSRR----------EALWAAGAAATGRPDRLPGVGSSSH-----IPALPGMSELEL 963

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +    G     +P    +  L  MG+   E   +   G+ + +A  V  +Q+  T +
Sbjct: 964  AAADVWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQ 1023

Query: 1012 GSRIGWVTFSEPAKEYEANF 1031
            G  + ++   +         
Sbjct: 1024 G--VTFINLEDETGMVNVLC 1041


>gi|186476725|ref|YP_001858195.1| DNA polymerase III subunit alpha [Burkholderia phymatum STM815]
 gi|184193184|gb|ACC71149.1| DNA polymerase III, alpha subunit [Burkholderia phymatum STM815]
          Length = 1049

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/1037 (25%), Positives = 454/1037 (43%), Gaps = 62/1037 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S+++ L+GA     + ++ +      +AITD  +L   +     A   G+ 
Sbjct: 9    PAYAELFCLSNFTFLQGASHAEELAERASQLGYSGLAITDECSLAGVVRAHVAAKEKGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +I            ++ N   TP      ++LL    EGY  L EL++        K  
Sbjct: 69   LVI--------GSYFRLRNADGTP---AFGLILLAQNREGYGNLSELITLARTR-APKGE 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L     E   +        I    F  +  V + ++    + F  R +V L  
Sbjct: 117  YRLTPHDLSRPDRENAHLRGMPDCLAILVPDFPANEAVLDAQIEWLDETFQGRAWVGLVL 176

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H R  D      V  +A    +P+VA  + +          D + A+     V +     
Sbjct: 177  HQRAMDDIHRGSVEYVANQQNVPVVALGHVVMHVRSRKPLQDTMTAIRVGRPVHECGYEL 236

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  + +++ D    +  T+ +  RC+F L       P     E       
Sbjct: 237  APNAEQHLRSRLRIANLYPDH--TVRETISVLSRCAFSLDQLRYEYP----DELVPAGYT 290

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR +   G + R   G         + +Q+++ EL +IA + +  YFL V D +++
Sbjct: 291  PTQYLRQETYIGAQHRFPSGI------PFNVQQQIEHELALIADLGYEPYFLTVYDIVRY 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A S   Y L +T++DP R ++LFERF++ +R   PD D+DF   R
Sbjct: 345  ARSQHI-LCQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEPPDIDVDFEHQR 403

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG +R A      + + + ALR+ G+AL +    VD + K         
Sbjct: 404  REEVIQYIYRKYGRDRAAIAAAVSTYRPRGALRETGKALGVDPQLVDTVAKSHHWFDTSH 463

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L+   +           P +     ++ +L    RH S H+ G VI    L++LVP+ 
Sbjct: 464  DLLKRFEESG----LDPEKPLIQAWARLAAQLLNFPRHLSQHSGGFVISRGKLTRLVPVE 519

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                +D  V +++   +E  GL+K D L L  L+ ++++LD +A R   + ++  IP +D
Sbjct: 520  NAAMADRSVIEWDKDDLEALGLLKVDVLALGMLSAIRRTLDLVADRTGERFEMQDIPAED 579

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
              TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI       Y  
Sbjct: 580  KATYDMISNADTIGVFQIESRAQMSMLPRLRPQKFYDLVIEVAIVRPGPIQGGAVHPYLR 639

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+   E +      +   LK T GV I+QEQVMQ+A L +G++  EAD LRRAM   K K
Sbjct: 640  RRQKLEPVSYPSEQLKIALKRTLGVPIFQEQVMQVAILAAGFTPGEADQLRRAMAAWKRK 699

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              ++K  +R ++G  + G  ++ A  IFE +  F +YGF +SHAA++A++ Y ++W+K H
Sbjct: 700  GGLEKYYDRIVNGMRERGYEQSFAEAIFEQIKGFGEYGFPESHAASFALLVYASSWLKCH 759

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIY 836
             P  FLAA +  +        +  QDAR+  ++++P  V     D  +          + 
Sbjct: 760  EPEAFLAAMLNSQPMGFYSPSQLVQDARRHGVRVLPVDVTVSGWDSSLETIRGQQRPAVR 819

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L+ ++G+    A  I  A A +PF S+ D   R      NRR L  L  A AL     
Sbjct: 820  LGLSLLRGMKDGAAERIENARAVRPFRSVHDLARRAQL---NRRDLHVLADANALSSLAG 876

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R + L           W         + +        + +    +    + +     + 
Sbjct: 877  NRREAL-----------WHSVAAVPDKDML-----SVAAVQDDTPELGAPSEAQDIVADY 920

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            R +G     HPL++ +P+L +  +           G   R   +V  +Q+  T KG  + 
Sbjct: 921  RSVGLTLGRHPLELLRPVLLEQRLLPASTLRDYRNGRLARGCGIVTVRQRPGTAKG--VL 978

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +VT  +         +P
Sbjct: 979  FVTIEDETGNVNVIIWP 995


>gi|253800417|ref|YP_003033418.1| error-prone DNA polymerase [Mycobacterium tuberculosis KZN 1435]
 gi|289747192|ref|ZP_06506570.1| error-prone DNA polymerase [Mycobacterium tuberculosis 02_1987]
 gi|308379492|ref|ZP_07486489.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu010]
 gi|308380670|ref|ZP_07490710.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu011]
 gi|68565552|sp|O50399|DNAE2_MYCTU RecName: Full=Error-prone DNA polymerase
 gi|13883304|gb|AAK47817.1| DNA polymerase III, alpha subunit, putative [Mycobacterium
            tuberculosis CDC1551]
 gi|253321920|gb|ACT26523.1| error-prone DNA polymerase [Mycobacterium tuberculosis KZN 1435]
 gi|289687720|gb|EFD55208.1| error-prone DNA polymerase [Mycobacterium tuberculosis 02_1987]
 gi|308356814|gb|EFP45665.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu010]
 gi|308360762|gb|EFP49613.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu011]
 gi|328460150|gb|AEB05573.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            KZN 4207]
          Length = 1098

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1040 (27%), Positives = 486/1040 (46%), Gaps = 62/1040 (5%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + +  S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A
Sbjct: 57   ERVGSSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAA 116

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                ++ + G       + +L  T + + P P  P +++L    EGY+RL   ++  +L 
Sbjct: 117  AELDVRTVFGA------ELSLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLA 170

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-R 181
               K   R     L E       +LTG   G + +A        A++ L      F   R
Sbjct: 171  GGEKGKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSR 230

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TV 239
            + + L  H    D  R + +  LA    + +VAT  + F           + A+    ++
Sbjct: 231  VSIELTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSL 290

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             S           +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +
Sbjct: 291  DSAAGWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPD 350

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E++ LR+  +AG   R      A   ++     +++ EL VIA+++F GYFL+
Sbjct: 351  G----HTEDSWLRSLVMAGARERYGPPKSAPRAYS-----QIEHELKVIAQLRFPGYFLV 401

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D  ++ + N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D
Sbjct: 402  VHDITRFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDID 460

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID   D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K +
Sbjct: 461  IDIESDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQV 520

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +                  +A   D   +++++++ ++  L RH   H+ G+VI DRP+
Sbjct: 521  SHWTG---------------QADDVDGIPEQVIDLATQIRNLPRHLGIHSGGMVICDRPI 565

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            + + P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VDL
Sbjct: 566  ADVCPVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDL 625

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   
Sbjct: 626  ARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGG 685

Query: 659  --VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
                Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRA
Sbjct: 686  SVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRA 745

Query: 717  M-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            M  K+  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + +
Sbjct: 746  MGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVF 805

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             +AW K H+P  F AA +  +       +    DAR+  + +  P VN         +  
Sbjct: 806  YSAWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAG 865

Query: 835  I--YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
                  L A++ +G   A  ++    A+ PF SL D  SRV     +   +E+L  AGAL
Sbjct: 866  TEVRLGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRVQL---SVPQVEALATAGAL 922

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
             CFG SR           +         T + + +      +      +      +    
Sbjct: 923  GCFGMSRR----------EALWAAGAAATGRPDRLPGVGSSSH-----IPALPGMSELEL 967

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +    G     +P    +  L  MG+   E   +   G+ + +A  V  +Q+  T +
Sbjct: 968  AAADVWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQ 1027

Query: 1012 GSRIGWVTFSEPAKEYEANF 1031
            G  + ++   +         
Sbjct: 1028 G--VTFINLEDETGMVNVLC 1045


>gi|161350055|ref|NP_338003.2| error-prone DNA polymerase [Mycobacterium tuberculosis CDC1551]
 gi|161352461|ref|NP_217887.2| error-prone DNA polymerase [Mycobacterium tuberculosis H37Rv]
 gi|161511527|ref|NP_857046.2| error-prone DNA polymerase [Mycobacterium bovis AF2122/97]
 gi|298526851|ref|ZP_07014260.1| error-prone DNA polymerase [Mycobacterium tuberculosis 94_M4241A]
 gi|308232437|ref|ZP_07416048.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu001]
 gi|71151828|sp|Q7TWL9|DNAE2_MYCBO RecName: Full=Error-prone DNA polymerase
 gi|298496645|gb|EFI31939.1| error-prone DNA polymerase [Mycobacterium tuberculosis 94_M4241A]
 gi|308213944|gb|EFO73343.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu001]
 gi|323717954|gb|EGB27142.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            CDC1551A]
          Length = 1091

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1040 (27%), Positives = 486/1040 (46%), Gaps = 62/1040 (5%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + +  S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A
Sbjct: 50   ERVGSSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAA 109

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                ++ + G       + +L  T + + P P  P +++L    EGY+RL   ++  +L 
Sbjct: 110  AELDVRTVFGA------ELSLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLA 163

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-R 181
               K   R     L E       +LTG   G + +A        A++ L      F   R
Sbjct: 164  GGEKGKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSR 223

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TV 239
            + + L  H    D  R + +  LA    + +VAT  + F           + A+    ++
Sbjct: 224  VSIELTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSL 283

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             S           +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +
Sbjct: 284  DSAAGWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPD 343

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E++ LR+  +AG   R      A   ++     +++ EL VIA+++F GYFL+
Sbjct: 344  G----HTEDSWLRSLVMAGARERYGPPKSAPRAYS-----QIEHELKVIAQLRFPGYFLV 394

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D  ++ + N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D
Sbjct: 395  VHDITRFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDID 453

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID   D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K +
Sbjct: 454  IDIESDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQV 513

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +                  +A   D   +++++++ ++  L RH   H+ G+VI DRP+
Sbjct: 514  SHWTG---------------QADDVDGIPEQVIDLATQIRNLPRHLGIHSGGMVICDRPI 558

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            + + P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VDL
Sbjct: 559  ADVCPVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDL 618

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   
Sbjct: 619  ARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGG 678

Query: 659  --VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
                Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRA
Sbjct: 679  SVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRA 738

Query: 717  M-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            M  K+  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + +
Sbjct: 739  MGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVF 798

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             +AW K H+P  F AA +  +       +    DAR+  + +  P VN         +  
Sbjct: 799  YSAWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAG 858

Query: 835  I--YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
                  L A++ +G   A  ++    A+ PF SL D  SRV     +   +E+L  AGAL
Sbjct: 859  TEVRLGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRVQL---SVPQVEALATAGAL 915

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
             CFG SR           +         T + + +      +      +      +    
Sbjct: 916  GCFGMSRR----------EALWAAGAAATGRPDRLPGVGSSSH-----IPALPGMSELEL 960

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +    G     +P    +  L  MG+   E   +   G+ + +A  V  +Q+  T +
Sbjct: 961  AAADVWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQ 1020

Query: 1012 GSRIGWVTFSEPAKEYEANF 1031
            G  + ++   +         
Sbjct: 1021 G--VTFINLEDETGMVNVLC 1038


>gi|255523410|ref|ZP_05390379.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|255512868|gb|EET89139.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
          Length = 959

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/847 (38%), Positives = 481/847 (56%), Gaps = 52/847 (6%)

Query: 232  MAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            M +    VV++++R R   D  YLK+  EM  IFS +PEALENTV+IA +C+F  + H  
Sbjct: 1    MCIQTGKVVNEENRMRYPSDEFYLKSPEEMYKIFSRVPEALENTVKIAEQCNFDYEFHKS 60

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY---------------HAQ 335
             LP+F   E      E    LR+    GL  R  +    K                  A+
Sbjct: 61   KLPKFPLPE----HVEPYEYLRDLCYKGLIQRYKEFEQLKEVSFSIESVNELADSNDEAK 116

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
               +RL++EL++I +M +  YFLIV DFI ++ +N I  GPGRGS AGS+ AY L IT I
Sbjct: 117  KLVERLEYELSIIKQMGYVDYFLIVWDFINFSVENGIMTGPGRGSAAGSIIAYTLGITKI 176

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DP+++SLLFERFLNP+R+SMPD D DFC +RR EVI YV  KYG   V+QIITFG++ A+
Sbjct: 177  DPIKYSLLFERFLNPERVSMPDIDSDFCYERRGEVIDYVVRKYGENSVSQIITFGTMAAR 236

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEI 514
            A +RDVGRA+  PY++VDR+ K+IP  P   +++ +A+  +S   EA   +     L++I
Sbjct: 237  ACIRDVGRAMNYPYAEVDRIAKMIPAAPGKAITIDKALELNSELEEAYENEERTKALIDI 296

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++ LEGL RH STHAAG+VI  +PL   VPM +    D  VTQF M  +E+ GL+K DFL
Sbjct: 297  ARALEGLPRHTSTHAAGVVIASQPLVNYVPMQK--NEDNIVTQFTMGTLEELGLLKMDFL 354

Query: 575  GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+TLT+L+ ++  +   +G+ +DL  I +DD   Y ++    T+GIFQLES+GM   ++
Sbjct: 355  GLRTLTVLRDAVSMVKDNKGINIDLDKIDYDDKNVYKMIGEGKTVGIFQLESAGMTSFMK 414

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
             ++PD +EDIIA +SLYRPGP+  I  Y + KN  E I  + P ++ +L  T G ++YQE
Sbjct: 415  ELRPDSLEDIIAGISLYRPGPMAEIPKYISNKNNPEGIEYLTPELESILGVTYGCMVYQE 474

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS------------GASKNGI 741
            QVM+I + L+GYS+  +D++RRAM KK    M++++  FI             G  KNGI
Sbjct: 475  QVMEIVRKLAGYSMGRSDLVRRAMSKKKHHVMEEERHNFIYGIVDEEGVEKVPGCIKNGI 534

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            S+  A  IF+ +  FA Y FNKSHAA+YAV+++QTA+M  +YP E++AA +     + EK
Sbjct: 535  SEDAADKIFDSMMDFASYAFNKSHAASYAVVAFQTAYMIHYYPTEYIAAMLNSVKGDNEK 594

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DK 860
            +  + + A +  IQ++ P++N     F V +++I + L+AIK VG      I+++     
Sbjct: 595  VAYYTRFADEIGIQVLTPNINESYAKFTVKEDKIRFGLSAIKNVGENVIDSIVKSRERKG 654

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             F +L DFC+++D   +N+RV+ESL+ AGA DCF   R +LL   + +        K   
Sbjct: 655  VFSNLVDFCNKIDVSCINKRVVESLIKAGAFDCFKVYRSKLLAVYEKVLDGVSNSRKKNI 714

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
            +   ++F   K     KI   +            E+ + G Y SGHPL+ Y+  L     
Sbjct: 715  DGQLSLFTDFK-KIEVKIEYPEIKEFEKRHILAMEKEMTGLYLSGHPLEEYEKSLSLQTS 773

Query: 981  KGYEESVA--------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
                + +                  G+ + +  ++ S  +K TR    + ++   +    
Sbjct: 774  AKISDIIGDESLEDGTVGQQSKLKDGDKVIIGGIINSVTKKVTRNNDMMAFIKLEDLYGV 833

Query: 1027 YEANFFP 1033
             E   FP
Sbjct: 834  IEIIIFP 840


>gi|148243808|ref|YP_001220047.1| DNA polymerase III, alpha subunit [Acidiphilium cryptum JF-5]
 gi|146400371|gb|ABQ28905.1| error-prone DNA polymerase, DnaE-like [Acidiphilium cryptum JF-5]
          Length = 1082

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1046 (26%), Positives = 460/1046 (43%), Gaps = 75/1046 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    ++V L   S +S L GA S + +  + A     A+AITD N L   +     A A
Sbjct: 1    MSTDTAYVELHCTSHFSFLRGASSCDELFAQAAHLGLEALAITDRNTLAGIVRAHVAAKA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              ++ I+GC                +       ++++  +    Y RL  L+S       
Sbjct: 61   NDMRLIVGC----------------RLDLTDGTALLVYPTDRPAYARLSRLLSLGKQRG- 103

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            GK   R+  S L       + +L  G +                + L    + FGDR Y+
Sbjct: 104  GKAQCRLDWSDLVAYAEGLIGVLVPGEA-----------DDACVRNLRRLAQSFGDRAYL 152

Query: 185  NLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L  R R  D  R  ++  LA   ++P V TN+ LF + +     DV+  + H   +   
Sbjct: 153  ALTLRRRPNDALRLFELSNLAARAKVPTVVTNDVLFHARDRRILQDVVTCIRHGCTIDDA 212

Query: 244  D-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              R     D YLK  +EM  +FS  PEAL  T EIA RC F L       P     E   
Sbjct: 213  GFRRERHADRYLKPPAEMHRLFSRYPEALARTQEIADRCLFSLDELRYQYP----DENVL 268

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 +  L      G   R   G  A      +    L  EL +I  + ++ YFL V  
Sbjct: 269  PGLTTQEALTQLTWEGAAQRYPAGVPA------EVVTILRHELRLIETLDYAPYFLTVNS 322

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+   I +  GRGS A S   + L IT IDP R  LLFERF++ +R   PD D+DF
Sbjct: 323  IVRFARSQGI-LCQGRGSAANSAVCFVLGITSIDPERNDLLFERFISEERREPPDIDVDF 381

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+ V+++V + YG +  A   T    + K ALRDVG+AL +P   +  L   +   
Sbjct: 382  EHERREIVMQWVFDTYGRDHAALCSTVIRYRTKGALRDVGKALGLPEDLITALNAQVWGW 441

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +  A+        L D  +   ++++++L G  RH S H  G V+    L +L
Sbjct: 442  SEGGIEPKHAAE----LHLNLEDRRLKLAIDLARELIGTPRHLSQHPGGFVLTRDRLDEL 497

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601
            VP+      +  + +++   I+    +K D L L  L+ +++  D LAQ   +++DL+ I
Sbjct: 498  VPIEPAAMDNRQIIEWDKDDIDALKFMKVDCLALGMLSCMKRGFDLLAQHKGIELDLATI 557

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY ++    TLG FQ+ES      L  M+P    D++  V++ RPGPI  D + 
Sbjct: 558  PAEDPHTYAMIRRADTLGTFQIESRAQMVMLPRMKPRTFYDLVIEVAIVRPGPIQGDMVH 617

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+ GKE +V   P ++ +L +T GV ++QEQ M++A   +G++ +EAD LRR+M  
Sbjct: 618  PYLRRREGKEAVVYPKPELEKVLGKTLGVPLFQEQAMRVAIECAGFTATEADQLRRSMAT 677

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    +   +++ +SG   NG  +  A   F  L  F  YGF +SHAA++A+I+Y ++W
Sbjct: 678  FKFTGGVSHFRDKLVSGMVANGYEQEFAERTFSQLEGFGSYGFPESHAASFALIAYASSW 737

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----- 833
            +K H+P  F AA +  +        +  +DA+   ++I P  VN    D  +        
Sbjct: 738  LKCHHPDVFCAALLNAQPMGFYAPAQIVRDAKDHGVEIRPVCVNASRWDCTLEPTHDESR 797

Query: 834  -RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              +   L  +KGV       ++ A A+  F S++D   R     +    L  +  A A  
Sbjct: 798  LAVRLGLRMVKGVANPHVAKMIAARANHLFASVDDLWRRA---GVPTAALVQMAEADAF- 853

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-- 950
                     L SL   ++ A W  K   ++   +FA         ++  +  V       
Sbjct: 854  ---------LPSLKLARRDALWAIKALRDEALPLFAAVANRTEQPVSELQEPVFALKPLT 904

Query: 951  ---RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                   +   LG     HP+   +  LR+  I   ++ ++T  G  +  A +V+ +Q+ 
Sbjct: 905  GGGEVVEDYVHLGLSLRSHPVAYLREDLRRERIVSCDQVMSTRDGKFLETAGIVLVRQRP 964

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + +G  + ++T  +         +P
Sbjct: 965  GSARG--VMFITIEDETGIANLVIWP 988


>gi|312961389|ref|ZP_07775894.1| DNA polymerase III alpha subunit [Pseudomonas fluorescens WH6]
 gi|311285047|gb|EFQ63623.1| DNA polymerase III alpha subunit [Pseudomonas fluorescens WH6]
          Length = 1030

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/1037 (27%), Positives = 463/1037 (44%), Gaps = 84/1037 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L   S+++   GA S   + ++       A+AITD   L   +   Q A A  +  
Sbjct: 9    SYAELPCLSNFTFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVDLPL 68

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ I+                  P +VLLV    GYQ L  L++      Q K S 
Sbjct: 69   IIGSEVRIENG----------------PKLVLLVQDLSGYQHLCRLITLARRRAQ-KGSY 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+      +    GL+ L          +            +   ++ F +RL++ +  H
Sbjct: 112  RLLHDDFAQ-PLPGLLALWVAEDSDTQTS------------IQWLRQTFAERLWLAVHLH 158

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
             G D  R   Q ++LA +  +P VA  +    +       D + A+ H   V++   R  
Sbjct: 159  CGQDDARHLQQRLRLAASLRIPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLH 218

Query: 248  VTPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L++   + +++   P+AL + T  IARRC+F L       PR +  E  D    
Sbjct: 219  PNGERHLRSLDALRALY---PQALLDETQRIARRCTFDLGQLRYHYPRELVPEGHDA--- 272

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     G+  R  +G  AK        Q+++ EL +I R+ +  YFL V D +++
Sbjct: 273  -ASWLRTVTEEGIAQRWPEGIDAKT------LQQINHELALIGRLGYESYFLTVHDIVRF 325

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A S   +AL IT+I+P   ++LFERFL+ +R   PD D+DF  +R
Sbjct: 326  ARSRSI-LCQGRGSAANSAVCFALGITEINPSLTNMLFERFLSEERNEPPDIDVDFEHER 384

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV  +YG  R A      S  A  A+RDV +AL +P  Q++ L           
Sbjct: 385  REEVLQYVFQRYGRTRAALTAVVSSYHASGAVRDVAKALGLPPDQINALADCCGRWSDDA 444

Query: 487  VSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              L+      R REA      P + R+L ++Q+L G  RH S H  G VI + PL  LVP
Sbjct: 445  PPLE------RLREAGFDPDSPLLRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDTLVP 498

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPF 603
            +     ++  + Q++   ++  GL+K D L L  L+ +++  D L   R + + L+ IP 
Sbjct: 499  VENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNLDLALATIPK 558

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661
            +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +   Y
Sbjct: 559  EDPATYAMISKADTIGVFQIESRAQMSMLPRLKPQTFYDLVIEVAIVRPGPIQGGMVHPY 618

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R+N +EK     P +  +L+ T G+ ++QEQVMQIA + + YS  EAD LRR+M   K
Sbjct: 619  LRRRNKEEKTTYPSPQLKTVLERTLGIPLFQEQVMQIAMVAADYSPGEADQLRRSMAAWK 678

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                ++  +ER  +G   NG ++  A  IFE +  F  YGF +SHAA++A+++Y + W+K
Sbjct: 679  RHGGLEPHQERLRTGMLNNGYTEAFAAQIFEQIKGFGSYGFPESHAASFALLTYASCWLK 738

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRI 835
             H P  F  A +           +  QDAR+  +QI P  V     D  +         I
Sbjct: 739  CHEPAAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASDWDCSLEPIDGQQPAI 798

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  I G      R +  A     F  + D   R       + +L     AGAL    
Sbjct: 799  RLGLRMISGFREEDGRRLEAARRRGVFRDIADLDQRAGLDARAQALL---ADAGALRALA 855

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R Q    +  +                 +FA   G     + L   +V         +
Sbjct: 856  GNRHQARWEVAGVHT------------QLGLFAGLPGPDEAVVALPTPTVGED---LHAD 900

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
               +G     HPL + +  LRK   +   E +A   G N+ +  +V  +Q+  T  G  +
Sbjct: 901  YATVGTTLGPHPLALLRDELRKRRCRSSRELMAVEHGRNVSVVGLVTGRQRPGTASG--V 958

Query: 1016 GWVTFSEPAKEYEANFF 1032
             +VT  +         +
Sbjct: 959  TFVTLEDEFGNLNVVVW 975


>gi|134296110|ref|YP_001119845.1| DNA polymerase III subunit alpha [Burkholderia vietnamiensis G4]
 gi|134139267|gb|ABO55010.1| error-prone DNA polymerase, DnaE-like protein [Burkholderia
            vietnamiensis G4]
          Length = 1093

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1070 (26%), Positives = 461/1070 (43%), Gaps = 96/1070 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA     ++ + A     A+AI D  ++   +     A  A + 
Sbjct: 21   PDYAELCCVSNFTFLRGASHAEELVARAAQLGYQALAIADECSMAGIVRAHVAAKEAELP 80

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ-GKQ 127
             I+            ++            S++ L    EGY  L EL++     +   K 
Sbjct: 81   LIV--------GSRFRLVTADGK---LAVSLIALAQNREGYGNLCELITLARTREGVEKG 129

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            S R+    L         +        I  A +  + +    +    + +F  R ++ L 
Sbjct: 130  SYRLTPRDLDHPEAPFEHLRGLPDCLVIVEAEYGAADERLIAQADWARTVFPGRAWLGLC 189

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
              HR  D   E  V   A    L +VA              HD L AV     +++    
Sbjct: 190  LLHRSRDDEHEDAVRWAARETGLRMVALGGVEMHVRSRKPLHDALTAVRLGKPIAECGFD 249

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 +  L++R  + +++S   EAL+ TV IA  C F L       P  +  E +    
Sbjct: 250  LAPNAERCLRSRLRLANLYSR--EALDETVRIAELCDFSLDELRYEYPSEVIPEGE---- 303

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR +   G + R  QG           + +++ EL++IA M++  YFL V D ++
Sbjct: 304  TPASYLRKETYLGAQRRFPQGV------PTVVQSQIEHELDLIAAMRYESYFLTVYDIVR 357

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S   Y L IT++DP R +LLFERF++ +R   PD D+DF   
Sbjct: 358  FARSQHI-LCQGRGSAANSAVCYCLGITEVDPERGNLLFERFISKERGEPPDIDVDFEHQ 416

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV++Y+  KYG  R A      S ++++ALRD+G+AL +    V+++ +      AH
Sbjct: 417  RREEVVQYIYRKYGRHRAALAAAVISYRSRSALRDMGKALGVDLGLVEQVAR------AH 470

Query: 486  PVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                 A     RF EA LA   P   +   ++  L G  RH S H  G VI    LS+LV
Sbjct: 471  HWWDNAKDLAERFTEAGLAPESPIAKQWANLAHALRGFPRHLSQHVGGFVISHSKLSRLV 530

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+ R       V +++   +E  GL+K D L L  L+ ++++LDF+++  G   ++  IP
Sbjct: 531  PIERASMEGRSVIEWDKDDLEALGLLKVDVLALGMLSAIRRALDFVSEGTGEPFEMQDIP 590

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--V 660
             +D ETY +++   T+G+FQ+ES      L  ++P+   D++  +SL RPGPI   +   
Sbjct: 591  KEDPETYAMISKADTVGVFQIESRAQMTMLPRLKPERFYDLVIEISLIRPGPIQGGMVHP 650

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+ G E +    P ++  L  T GV I+QEQVMQ+A L +G++  EAD LRR+M   
Sbjct: 651  YLRRRQGIEPVSYPSPEMEAALSRTLGVPIFQEQVMQVAMLAAGFTPGEADQLRRSMAAW 710

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K  + +  +R + G +  G +   A +IF+ +  F +YGF +SHAA++AV+ Y ++W+
Sbjct: 711  KRKGGLGQYYDRILDGMTSRGYTVEFAESIFKQIEGFGEYGFPESHAASFAVLVYASSWL 770

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI---- 835
            K H+P  FLAA +  +           QDAR+  ++++   V+       +         
Sbjct: 771  KRHHPAAFLAALLNSQPMGFYSPSALVQDARRHGVRVLSVDVSVSDWAATLESEATDGEA 830

Query: 836  --------------------------------YYSLAAIKGVGTTTARHIMEASADKPFD 863
                                               LA  +G+       I EA A +PF+
Sbjct: 831  GGGVGATVGDGARKSKVDKAAGRDPIDRARAVRLGLAQARGLSQEAGWRIEEARAVRPFE 890

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            S+ D   R      NR  L++L  AGAL      R + L  +      A   +K+     
Sbjct: 891  SVADLALRASL---NRHDLDALAQAGALASLAGHRREALWQV-----VASLPDKDLLRG- 941

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                        + + L         V    + R LG     HPL + +  L        
Sbjct: 942  -------AAIEEEAVALPAPREAEDIVS---DYRALGLTLGRHPLSLLRERLAAQRFMTA 991

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            E   A   G   R   +V  +Q+  T  G  + +VT  +         +P
Sbjct: 992  EILNAYPNGRLARACGIVTVRQRPGTASG--VVFVTLEDETGNVNVIVWP 1039


>gi|302335488|ref|YP_003800695.1| DNA polymerase III, alpha subunit [Olsenella uli DSM 7084]
 gi|301319328|gb|ADK67815.1| DNA polymerase III, alpha subunit [Olsenella uli DSM 7084]
          Length = 1302

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/1050 (31%), Positives = 516/1050 (49%), Gaps = 92/1050 (8%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC+      D ++   + +        ++LL     GY  LI+ +S+    +   
Sbjct: 126  IKPIFGCEAYFITDDCIERGTKQRR-----YHLILLAKNERGYVNLIKCMSQAAGHEMMY 180

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R  L  L+    EGLI  +    G I +       + A +   TF+ +FGD  Y+ +
Sbjct: 181  YKPRTTLDMLKRYH-EGLICQSACVQGIIQQRVIEGDVEGARQWARTFQDVFGDDFYMEI 239

Query: 187  QRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            Q H         DR  +  ++++A    + +V TN+  +L+ ED    D+L  +  +T +
Sbjct: 240  QDHGLEFPNGWNDRKLDEYLIKIADELGVKVVCTNDIHYLTREDASTQDILSCIGKATTI 299

Query: 241  SQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                R R+   + Y+K+  EM  +FS  P+A +NT+E+A +C + L  ++  LP F    
Sbjct: 300  DDNSRMRMEGTEFYMKSEEEMRQLFSWYPQACDNTLEVADKCDYELDWNSMYLPEFP--- 356

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 +  E   R +   GL  R  +G         + R R + E  +I    F+ YFLI
Sbjct: 357  GLRKGETAEERFREECERGLAKRYGEGWRDLEIGGWNVRDRFEHEYKIITEKGFANYFLI 416

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D++QWAK N I VGPGRGS AG++ AYA+ IT+ DPL   L+FERFL+P R  MPD D
Sbjct: 417  VQDYVQWAKDNGIGVGPGRGSAAGAIVAYAMNITNFDPLENGLMFERFLSPQRSEMPDID 476

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +    V+++V++ YG +RV ++IT+ +++AK A+ D  R L  P     RL K++
Sbjct: 477  MDFDDEHLQMVLQHVRDVYGEDRVCKVITYSTIKAKQAINDANRVLGFPVYMGQRLSKML 536

Query: 480  PNDPAHPVSLQAIADD-------SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
             NDP   +      ++         F EA   D    R+++ +  +EG  R    HA   
Sbjct: 537  SNDPKLTLPNALHKNEKKPDQYSPDFEEAYNKDADAHRIIDAALSIEGFMRGEGVHACAT 596

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
            +I   P++  VP   D + ++ +TQ+    +   GL+K DFLGL+TLT++ K+L+ + + 
Sbjct: 597  LIAPTPVTDHVPTKLDTKGNVTITQYEGHSVADMGLLKMDFLGLRTLTVINKALENIRRS 656

Query: 592  ----------------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
                                    V +D+    F D   Y LL +  T G+FQ+ES+GM 
Sbjct: 657  YPDLSRADELPEQVRSAIKPGATCVDLDVDKCDFSDPAIYELLGSGHTAGVFQVESAGMT 716

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQG 687
              ++GMQP   + I+AL++LYRPGP+   +V  Y NR NGKE +V     +  +L ET G
Sbjct: 717  ATIKGMQPTEYKHIVALIALYRPGPLGAGMVTSYINRMNGKEPVVFYDDRLSDILDETYG 776

Query: 688  VIIYQEQVMQIAQLLSGYSLSEAD-VLRRAMGKKIKEEM-------------DKQKERFI 733
             ++YQEQVMQI+  +S +S  E+D  +R+ + KK  + +             +   + ++
Sbjct: 777  TMVYQEQVMQISMKMSNFSPGESDGRIRKPVAKKKIKMLTSQVFHWEGDGADETIYDHWM 836

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +GA  NG  + +A  I++ + +FA Y FNKSH+A YA++  QTAW+K+H+P EF+A+ +T
Sbjct: 837  NGALGNGYQRDVAQRIWDDVLEFASYAFNKSHSAGYAILVMQTAWLKSHFPREFMASVLT 896

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
              M   +KI  +    R+  I ++PP VN    DF      + +  A I+GVG      I
Sbjct: 897  SYMGKTDKIVHYVTSCRREGIDVLPPDVNESGKDFTATPQGVRFGFAGIRGVGDGVGEAI 956

Query: 854  M-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD-----N 907
            M E  A  PF SL DFC RVD  + NRRV+E+L+ +GA D  GY R QL+  +D     N
Sbjct: 957  MAEREARGPFKSLHDFCERVDGSQANRRVVEALIKSGAFDSTGYPRKQLMGFVDKNDPAN 1016

Query: 908  IQKYAQWVEKNRTNKHENIFAH----EKGTFSDKITLE-KFSVENSSVRFENEQRVLGFY 962
            I   A   +K++ N   ++F          F D I         + + +   E  VLG Y
Sbjct: 1017 IIDAAAKRQKDKANGQVSMFDMFADVAGAGFEDDIPEPNPHDEWDRNTKLAQEHEVLGIY 1076

Query: 963  FSGHPLDVYKPILRKMGIKGYEESV-----------------ATIRGNNIRLAAM--VVS 1003
             S HPL  Y+  + K       E                       G  IRLA M  V  
Sbjct: 1077 VSDHPLRPYEYAISKARDYTLSEIEESEEVVDPVSGAATTRYKVPEGKPIRLAGMVPVGG 1136

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +K T+KG ++  VT  +   E     FP
Sbjct: 1137 VVKKVTKKGDQMAIVTLEDMEGEVTLVVFP 1166


>gi|58337253|ref|YP_193838.1| DNA polymerase III alpha-chain [Lactobacillus acidophilus NCFM]
 gi|227903838|ref|ZP_04021643.1| possible DNA-directed DNA polymerase [Lactobacillus acidophilus ATCC
            4796]
 gi|58254570|gb|AAV42807.1| DNA polymerase III alpha-chain [Lactobacillus acidophilus NCFM]
 gi|227868725|gb|EEJ76146.1| possible DNA-directed DNA polymerase [Lactobacillus acidophilus ATCC
            4796]
          Length = 1035

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/1024 (31%), Positives = 539/1024 (52%), Gaps = 44/1024 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    ++++++        ++ +TD N  +  + F + A  AGI+P++G 
Sbjct: 6    LQNLSSFTLLDSPTKVSDLINTAKEKGYQSVGLTDINVTYGLVNFYELAKKAGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
            Q+ ++          G         +++   +  GY  L+ L S + LL + G+    + 
Sbjct: 66   QVRLN----------GLIDSTQKYDLIVFAKSDAGYHNLLRLSSAINLLTENGQNDKILT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +  ++ L+++   +   +  A F  + Q+    L   +KL  D +Y+ +   +  
Sbjct: 116  LKELTKYLSDLLVIVPANTKSEL-VALFETNQQLGSDFLRELRKLSSD-VYLGVYASKNG 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPD 251
            + Y    +  L     LPLVA  ++ +L   D      L ++     +       + +  
Sbjct: 174  ENYIN-YLRTLNKQFNLPLVAVEDTEYLKPRDQFLQKTLRSINSGQKLQDILPLAKQSGS 232

Query: 252  HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HYL +  +++  +   DL EA+ NT +IA+ C+  +    P+LP++ + +        E 
Sbjct: 233  HYLASAEDVLERYHQLDLDEAVNNTWKIAQECNANVVFQKPVLPKYRQNKF----TTSEE 288

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR  A  GL+ R  Q  I       +Y++RL++EL +I +M F  YFLIV D + +  +
Sbjct: 289  YLRYLARTGLKDRFKQKTI-----PAEYQKRLNYELRIINQMGFDDYFLIVWDVVNYCHR 343

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS  GS+ +YAL IT++DPL ++LLFERFLNP R  MPD D+D    +RD 
Sbjct: 344  VKITTGPGRGSACGSLVSYALKITEVDPLEYNLLFERFLNPARHEMPDIDLDIPDVQRDT 403

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   ++++  + IP         
Sbjct: 404  VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEINKWARAIPYSKGKISLK 463

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            QA  +    R    A      L + +  LEGL RH S HAAG+VI D  ++ +  +    
Sbjct: 464  QAYEESRELRLLVDATQENKLLFQTAMNLEGLPRHYSIHAAGLVISDDSIAGISGLQAGP 523

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ   K++E  GL+K DFLGL+ LT+L   L+ + ++G+K+D + IP DD ET 
Sbjct: 524  L-GIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLICEQGIKIDPNEIPLDDSETL 582

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  IFQ ES G+RQ L  + P+  ED++A+ +LYRPGP+ NI ++  RKNG+ 
Sbjct: 583  QLFQEGKTDAIFQFESGGIRQVLRKLHPNNFEDLVAVNALYRPGPMQNIDIFIARKNGQA 642

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++K
Sbjct: 643  GVKYPDPSLKRILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQEK 702

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FISG  K G +K +   ++  + +FA+YGFN+SHA AY  +++  A++K HYP  F  
Sbjct: 703  SKFISGTIKKGHAKEVGERVYRYIEQFANYGFNRSHAVAYTKVAFWLAYLKVHYPAAFYT 762

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +        K + +   A++ NI+++ P +N   +D+ + +  I   L AIKG+    
Sbjct: 763  AMLNSSTSV--KAQSYIMQAQEANIKVVSPDINQSKLDYSLDNKNILVGLKAIKGLRMDF 820

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A+ I  A+  KP+ SL DF  R+D K L    +E+L+ AGA D    +R +LL +   I 
Sbjct: 821  AQEI--ANNTKPYKSLNDFLRRIDPKFLQVDAIEALIMAGAFDQIEDNRNELLINCKEII 878

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               Q   +N      ++             L+      ++ + E E++VLGF  +  PL 
Sbjct: 879  ANVQLTGQN-----MSL-----SEILGDAPLKHADKPTNAEKAEMEEKVLGFTTTTTPLV 928

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   RK   +   +      G ++     ++  +  +T+ G  + + +F++ + E E 
Sbjct: 929  AVQKFARKFNARPLSQFQINESGISV---GKLMKFKPIRTKNGKNMAFASFADSSSEQEV 985

Query: 1030 NFFP 1033
              FP
Sbjct: 986  IIFP 989


>gi|170690324|ref|ZP_02881491.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M]
 gi|170144759|gb|EDT12920.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M]
          Length = 1049

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/1047 (26%), Positives = 463/1047 (44%), Gaps = 66/1047 (6%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +       P++  L   S++S L GA     + ++ A     A+AITD  +L   +    
Sbjct: 1    MDTIFTMLPAYAELFCLSNFSFLRGASHAEELAERAAQLGYSALAITDECSLAGVVRAHV 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  A +  I+            ++ N   +P      ++LL    EGY  L EL++   
Sbjct: 61   AAKEAKLPFIV--------GSYFRLVNADGSP---AFGLILLARNREGYGNLSELITLAR 109

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 K   R+    L     E   +L       I    F     V + ++    + F  
Sbjct: 110  TR-APKGEYRLTPQDLSRPDKEYRHLLGVPDCLAILVPSFPAKEDVLDAQVEWLDETFPG 168

Query: 181  RLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R +V L  H R  D      V  +A   ++P+VA    L          D + A+     
Sbjct: 169  RAWVGLVLHQRAMDDIHRGAVEFVARNRDVPVVALGEVLMHVRSRKPLQDTITAIRVGKP 228

Query: 240  VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            V +         + +L++R  + +++S  P+AL  TV+IA RC+F L       P  +  
Sbjct: 229  VHECGYDLAPNAEQHLRSRLRLANLYS--PDALAATVDIAARCTFSLDELRYEYPDELVP 286

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                        LR +   G + R   G           +++++ EL +I  +++  YFL
Sbjct: 287  PGFTPGA----YLRQETYIGAQRRFPSGI------PHHVQEQIEHELELIGDLQYEPYFL 336

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
             V D +++A+  +I +  GRGS A S   Y L +T++DP R ++LFERF++ +R   PD 
Sbjct: 337  TVYDLVRFARSQHI-LCQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEPPDI 395

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF   RR+EVI+Y+  KYG +R A      + +A+  LR+ G+AL +    VD + K 
Sbjct: 396  DVDFEHQRREEVIQYIYRKYGRDRAAIAAAVSTYRARGVLRETGKALGVDLQIVDAVAK- 454

Query: 479  IPNDPAHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                 +H     +     RF E  L    P +     ++ +L G  RH S H+ G VI  
Sbjct: 455  -----SHHWFDNSADLLKRFEECGLNPDTPLIRAWASLAAQLYGFPRHLSQHSGGFVISR 509

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK 595
              L++LVP+      +  V Q++   +E  GL+K D L L  L+ ++++LD +  QRG +
Sbjct: 510  GKLTRLVPVENAAMPERSVIQWDKDDLESLGLLKIDVLALGMLSAIRRTLDLVSEQRGER 569

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             ++  IP +D  TY +++   T+G+FQ+ES      L  M+P    D++  V++ RPGPI
Sbjct: 570  FEMQDIPAEDKATYDMISAADTVGVFQIESRAQMSMLPRMRPRTFYDLVIEVAIVRPGPI 629

Query: 656  DNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                   Y  R+ G E +      +   L  T GV I+QEQVMQ+A L +G++  EAD L
Sbjct: 630  QGGAVHPYLRRRQGFEPVTYPGDALKTALGRTLGVPIFQEQVMQVAILAAGFTAGEADQL 689

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM   K K  + K  +R + G  + G     A  IFE +  F +YGF +SHAA++A++
Sbjct: 690  RRAMAAWKRKGGLGKYYDRIVLGMQERGYDLAFAEAIFEQIKGFGEYGFPESHAASFALL 749

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y ++W+K H P  FLAA +  +        +  QDA++  ++++P  V     +  +  
Sbjct: 750  VYASSWLKCHEPEAFLAAMLNSQPMGFYSPSQLVQDAQRHGVKVLPVDVTISGWNSSLEP 809

Query: 833  N------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                    +   L+ ++G+   TA  I  + A +PF S++D   R     L+RR L  L 
Sbjct: 810  MAGEKRPAVRLGLSLLRGMKEGTAERIENSRAVRPFASVKDLARRA---ALDRRDLHILA 866

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             A AL     +R + L             +       +++ A       +   L   S  
Sbjct: 867  DANALAALAGNRREALW------------QSVAAVPEKDMLA-AAAVEDETPELGAPSEA 913

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            N  +    + R +G     HPL++ +P L    +           G   R   +V  +Q+
Sbjct: 914  NDIL---ADYRSVGLTLGRHPLELLRPQLLANRLMPAATLRTYRDGRLARGCGLVTVRQR 970

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              T KG  + +VT  +         +P
Sbjct: 971  PGTAKG--VVFVTLEDETGNVNVIIWP 995


>gi|118464788|ref|YP_883471.1| error-prone DNA polymerase [Mycobacterium avium 104]
 gi|118166075|gb|ABK66972.1| DNA polymerase III, alpha subunit, putative [Mycobacterium avium 104]
          Length = 1093

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1040 (26%), Positives = 479/1040 (46%), Gaps = 60/1040 (5%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +    S  +  L  HS++S L+GA +   ++++ A     A+A+TD + L+ A+ F++ A
Sbjct: 50   RAARSSVPYAELHAHSAFSFLDGASTPEEMVEEAARLDLRALALTDHDGLYGAVRFAEAA 109

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                ++ + G       + +L  + + + P P  P +++L    EGY+RL   ++  +L 
Sbjct: 110  AELDVRTVFGA------ELSLGPSARTEAPDPPGPHLLVLARGPEGYRRLSRQLAAAHLA 163

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDR 181
               K   R  L  L E       +LTG   G + +A        A + L      F   R
Sbjct: 164  GGEKGKPRYDLDALTEAAGGHWHILTGCRKGHVRQALSEGGPDEAARALADLVDRFGAAR 223

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TV 239
            + + L RH    D  R + +  LA    + +VAT  + F           + A+    ++
Sbjct: 224  VSIELTRHGQPLDDERNAALAALAPRFGVGVVATTGAHFAGPSRRRLAMAVGAIRARESL 283

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             S           +L++  EM  +F+  PEA+    E+  +C+F L + AP LP F   +
Sbjct: 284  DSAAGWLAPLGGSHLRSGEEMARLFAWCPEAVTAAAELGEQCAFGLALIAPRLPPFDVPD 343

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E++ LR   + G   R          HA     +++ EL VIA+++F GYFL+
Sbjct: 344  G----HTEDSWLRQLTMTGARDRYGS-----PEHAPRAYAQIEHELKVIAQLQFPGYFLV 394

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D  ++ ++NNI +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D
Sbjct: 395  VHDIARFCRENNI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDID 453

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +D   D+R++VI+YV ++YG +  AQ+    + + K A+RD+ RAL     Q D   K I
Sbjct: 454  MDIESDQREKVIQYVYDRYGRDYAAQVANVITYRGKIAVRDMARALGFSQGQQDAWSKQI 513

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +                  ++   +    ++++++ ++  L RH   H+ G+VI DRP+
Sbjct: 514  SSWSG-------------LADSPDVEGIPPQVIDLANQVRNLPRHLGIHSGGMVICDRPI 560

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            + + P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+   ++VDL
Sbjct: 561  ADVCPVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDL 620

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   
Sbjct: 621  ARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGG 680

Query: 659  --VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
                Y  R+NG + ++  HP ++P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRA
Sbjct: 681  SVHPYIRRRNGVDPVLYDHPSMEPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRA 740

Query: 717  M-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            M  K+  E M + + RF  G    +G    +    +E L  FA++GF +SHA ++A + +
Sbjct: 741  MGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRTYEKLEAFANFGFPESHALSFASLVF 800

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             ++W K H+P  F AA +  +       +    DAR+  + +  P VN       + +  
Sbjct: 801  YSSWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHATLENAG 860

Query: 835  I--YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
                  L A++ +G   A  +++   A+ PF SL D  +R+     +    E+L  AGA 
Sbjct: 861  TEVRLGLGAVRHIGDDLAEKLVQERKANGPFASLLDLTARLQL---SVPQTEALATAGAF 917

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
             CFG SR           +         T + + +      +      +      +    
Sbjct: 918  GCFGMSRR----------EALWAAGAAATQRPDRLPGVGSSSH-----IPALPGMSELEL 962

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +    G     +P    +  L  MG+       +   G+ + +A  V  +Q+  T +
Sbjct: 963  AAADVWATGISPDSYPTQFLRDDLDAMGVVPAARLGSVPDGDRVLIAGAVTHRQRPGTAQ 1022

Query: 1012 GSRIGWVTFSEPAKEYEANF 1031
            G  + ++   +         
Sbjct: 1023 G--VTFLNLEDETGMVNVLC 1040


>gi|308373723|ref|ZP_07433455.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu005]
 gi|308336574|gb|EFP25425.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu005]
          Length = 1098

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/1040 (27%), Positives = 485/1040 (46%), Gaps = 62/1040 (5%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + +  S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A
Sbjct: 57   ERVGSSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAA 116

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                ++ + G       + +L  T + + P P  P +++L    EGY+RL   ++  +L 
Sbjct: 117  AELDVRTVFGA------ELSLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLA 170

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-R 181
               K   R     L E       +LTG   G + +A        A++ L      F   R
Sbjct: 171  GGEKGKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSR 230

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TV 239
            + + L  H    D  R + +  LA    + +V T  + F           + A+    ++
Sbjct: 231  VSIELTHHGHPLDDERNAALAGLAPRFGVGIVTTTGAHFADPSRGRLAMAMAAIRARRSL 290

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             S           +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +
Sbjct: 291  DSAAGWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPD 350

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E++ LR+  +AG   R      A   ++     +++ EL VIA+++F GYFL+
Sbjct: 351  G----HTEDSWLRSLVMAGARERYGPPKSAPRAYS-----QIEHELKVIAQLRFPGYFLV 401

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D  ++ + N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D
Sbjct: 402  VHDITRFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDID 460

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID   D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K +
Sbjct: 461  IDIESDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQV 520

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +                  +A   D   +++++++ ++  L RH   H+ G+VI DRP+
Sbjct: 521  SHWTG---------------QADDVDGIPEQVIDLATQIRNLPRHLGIHSGGMVICDRPI 565

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            + + P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VDL
Sbjct: 566  ADVCPVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDL 625

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   
Sbjct: 626  ARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGG 685

Query: 659  --VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
                Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRA
Sbjct: 686  SVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRA 745

Query: 717  M-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            M  K+  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + +
Sbjct: 746  MGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVF 805

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             +AW K H+P  F AA +  +       +    DAR+  + +  P VN         +  
Sbjct: 806  YSAWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAG 865

Query: 835  I--YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
                  L A++ +G   A  ++    A+ PF SL D  SRV     +   +E+L  AGAL
Sbjct: 866  TEVRLGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRVQL---SVPQVEALATAGAL 922

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
             CFG SR           +         T + + +      +      +      +    
Sbjct: 923  GCFGMSRR----------EALWAAGAAATGRPDRLPGVGSSSH-----IPALPGMSELEL 967

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +    G     +P    +  L  MG+   E   +   G+ + +A  V  +Q+  T +
Sbjct: 968  AAADVWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQ 1027

Query: 1012 GSRIGWVTFSEPAKEYEANF 1031
            G  + ++   +         
Sbjct: 1028 G--VTFINLEDETGMVNVLC 1045


>gi|124263148|ref|YP_001023618.1| DNA polymerase III, alpha subunit [Methylibium petroleiphilum PM1]
 gi|124262394|gb|ABM97383.1| error-prone DNA polymerase, DnaE-like protein [Methylibium
            petroleiphilum PM1]
          Length = 1033

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/1034 (26%), Positives = 469/1034 (45%), Gaps = 72/1034 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L+  S++S L GA     ++++       A+AITD  ++   +     A   G+ 
Sbjct: 7    PAYAELRCLSAFSFLRGASMPEELVERAKELGYSALAITDECSVAGVVRAHVTAKEQGLP 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG Q  ++                   ++V+L  T +GY  L E ++++ +    K +
Sbjct: 67   LIIGSQFQLE---------------DAPFTLVVLAQTLQGYGNLCEFITKLRMASP-KGT 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+ L+ +        ++L                 +   K        F  R ++ ++ 
Sbjct: 111  YRLQLTDVLPGPLAECLVLVAPDRTAFP--------EELLKVARWMLTHFSGRCWLAVEL 162

Query: 189  HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV-VSQKDRP 246
             R  D      ++ +++    +PLVAT +            DV+ A              
Sbjct: 163  LRLLDDEMWLHKLREVSELTAIPLVATGDVHVHVRSRKALQDVMTATRVGKPLTGCGGAL 222

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +   + +L+ R  +   + +  E L  T  +A  CSF L       P     E   + + 
Sbjct: 223  QPNAERHLRTRLRLAQTYPE--ELLTETSRVASLCSFSLDELKYQYP----AEVVPVGET 276

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     G   R  +G  AK       + +++ EL +I+ + +  YFL VAD + +
Sbjct: 277  ASSFLRRLTYEGAGRRWPEGMQAK------VQTQIEHELKLISELGYEHYFLTVADIVNF 330

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A SV  Y L +T++DP R S+LFERF++ +R   PD D+DF  +R
Sbjct: 331  ARSRHI-LCQGRGSAANSVVCYCLGVTEVDPARMSVLFERFISKERNEPPDIDVDFEHER 389

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI Y+  KYG  R     T  S + K+A+RDVG+AL      VDR+ K         
Sbjct: 390  REEVIHYLYGKYGRHRAGLTATVISYRPKSAIRDVGKALGFDLETVDRVAKNHMWFEGRQ 449

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            V  + +A+          D +V +LL ++ +L G+ RH S H  G V+   PLS++VP+ 
Sbjct: 450  VLTERMAEVG----LNPEDLAVKQLLALTGQLIGMPRHLSQHVGGFVLTKGPLSRMVPIE 505

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                 D  V +++   ++  GL+K D L L  LT ++KSL+F+ QR   + ++  IP +D
Sbjct: 506  NAAMEDRTVIEWDKDDLDALGLLKVDVLALGMLTAIRKSLEFIGQRKGYRFEMQDIPAED 565

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
             ETY +++   T+G+FQ+ES      L  M+P+C  D++  V++ RPGPI   +   Y N
Sbjct: 566  PETYRMISKADTVGVFQIESRAQMSMLPRMKPECFYDLVIEVAIVRPGPIQGGMVHPYLN 625

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+ GKE +V     +   L  T GV ++QEQVMQ+A L +G++  EAD LRR+M   K K
Sbjct: 626  RRQGKEPVVYPSEALKEALGRTLGVPVFQEQVMQVAILAAGFTPGEADQLRRSMAAWKRK 685

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +D+   R + G +  G  K  A  IF+ +  F++YGF +SHAA++A++ Y + W+K H
Sbjct: 686  GGLDQYYSRIVDGMTARGYEKAFAEQIFQQIHGFSEYGFPESHAASFALLVYASCWIKCH 745

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----DNRIYYS 838
            +P EFLAA +  +        +  QDA++  + + P  V     D  +        +   
Sbjct: 746  HPAEFLAAMLNSQPLGFYTPSQLVQDAKRHGVDVRPVDVMYSDWDCTLEGLPHPPAVRLG 805

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L  + G+   + + ++ A  + PFD+ ED   R   ++   ++L +   A AL      R
Sbjct: 806  LRQVSGLKAESVQRLVAARQEAPFDNAEDLARRAALEQHEMKLLAA---ADALMSLSGHR 862

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             Q +     ++   + +              +     + + L +       V    +   
Sbjct: 863  RQQVWDAAALRSTPKLLR-------------DAPVDEEFLELPEAPEGEEIV---WDYAS 906

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             G     HPL + +P L    +   E+      G ++    +V  +QQ  T  G  + +V
Sbjct: 907  TGLTLRRHPLALLRPQLEARRLLTAEQLDRLPNGRHVGTCGIVTLRQQPDTANG--VIFV 964

Query: 1019 TFSEPAKEYEANFF 1032
            +  +     +   +
Sbjct: 965  SLEDETGVVQVICW 978


>gi|148663233|ref|YP_001284756.1| error-prone DNA polymerase [Mycobacterium tuberculosis H37Ra]
 gi|148824579|ref|YP_001289333.1| error-prone DNA polymerase [Mycobacterium tuberculosis F11]
 gi|215405390|ref|ZP_03417571.1| error-prone DNA polymerase [Mycobacterium tuberculosis 02_1987]
 gi|215413269|ref|ZP_03421958.1| error-prone DNA polymerase [Mycobacterium tuberculosis 94_M4241A]
 gi|219559445|ref|ZP_03538521.1| error-prone DNA polymerase [Mycobacterium tuberculosis T17]
 gi|260188426|ref|ZP_05765900.1| error-prone DNA polymerase [Mycobacterium tuberculosis CPHL_A]
 gi|260202555|ref|ZP_05770046.1| error-prone DNA polymerase [Mycobacterium tuberculosis T46]
 gi|260206735|ref|ZP_05774226.1| error-prone DNA polymerase [Mycobacterium tuberculosis K85]
 gi|289444974|ref|ZP_06434718.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            T46]
 gi|289449069|ref|ZP_06438813.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            CPHL_A]
 gi|289571607|ref|ZP_06451834.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            T17]
 gi|289576104|ref|ZP_06456331.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            K85]
 gi|294995861|ref|ZP_06801552.1| error-prone DNA polymerase [Mycobacterium tuberculosis 210]
 gi|297636030|ref|ZP_06953810.1| error-prone DNA polymerase [Mycobacterium tuberculosis KZN 4207]
 gi|297733029|ref|ZP_06962147.1| error-prone DNA polymerase [Mycobacterium tuberculosis KZN R506]
 gi|313660361|ref|ZP_07817241.1| error-prone DNA polymerase [Mycobacterium tuberculosis KZN V2475]
 gi|2661649|emb|CAA15755.1| PROBABLE DNA POLYMERASE III (ALPHA CHAIN) DNAE2 (DNA
            NUCLEOTIDYLTRANSFERASE) [Mycobacterium tuberculosis
            H37Rv]
 gi|31620149|emb|CAD95567.1| PROBABLE DNA POLYMERASE III (ALPHA CHAIN) DNAE2 (DNA
            NUCLEOTIDYLTRANSFERASE) [Mycobacterium bovis AF2122/97]
 gi|148507385|gb|ABQ75194.1| DNA polymerase III subunit alpha DnaE2 [Mycobacterium tuberculosis
            H37Ra]
 gi|148723106|gb|ABR07731.1| DNA polymerase III alpha subunit dnaE2 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis F11]
 gi|289417893|gb|EFD15133.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            T46]
 gi|289422027|gb|EFD19228.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            CPHL_A]
 gi|289540535|gb|EFD45113.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            K85]
 gi|289545361|gb|EFD49009.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            T17]
 gi|326905210|gb|EGE52143.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            W-148]
          Length = 1079

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1040 (27%), Positives = 486/1040 (46%), Gaps = 62/1040 (5%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + +  S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A
Sbjct: 38   ERVGSSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAA 97

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                ++ + G       + +L  T + + P P  P +++L    EGY+RL   ++  +L 
Sbjct: 98   AELDVRTVFGA------ELSLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLA 151

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-R 181
               K   R     L E       +LTG   G + +A        A++ L      F   R
Sbjct: 152  GGEKGKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSR 211

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TV 239
            + + L  H    D  R + +  LA    + +VAT  + F           + A+    ++
Sbjct: 212  VSIELTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSL 271

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             S           +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +
Sbjct: 272  DSAAGWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPD 331

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E++ LR+  +AG   R      A   ++     +++ EL VIA+++F GYFL+
Sbjct: 332  G----HTEDSWLRSLVMAGARERYGPPKSAPRAYS-----QIEHELKVIAQLRFPGYFLV 382

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D  ++ + N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D
Sbjct: 383  VHDITRFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDID 441

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID   D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K +
Sbjct: 442  IDIESDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQV 501

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +                  +A   D   +++++++ ++  L RH   H+ G+VI DRP+
Sbjct: 502  SHWTG---------------QADDVDGIPEQVIDLATQIRNLPRHLGIHSGGMVICDRPI 546

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            + + P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VDL
Sbjct: 547  ADVCPVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDL 606

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   
Sbjct: 607  ARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGG 666

Query: 659  --VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
                Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRA
Sbjct: 667  SVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRA 726

Query: 717  M-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            M  K+  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + +
Sbjct: 727  MGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVF 786

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             +AW K H+P  F AA +  +       +    DAR+  + +  P VN         +  
Sbjct: 787  YSAWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAG 846

Query: 835  I--YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
                  L A++ +G   A  ++    A+ PF SL D  SRV     +   +E+L  AGAL
Sbjct: 847  TEVRLGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRVQL---SVPQVEALATAGAL 903

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
             CFG SR           +         T + + +      +      +      +    
Sbjct: 904  GCFGMSRR----------EALWAAGAAATGRPDRLPGVGSSSH-----IPALPGMSELEL 948

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +    G     +P    +  L  MG+   E   +   G+ + +A  V  +Q+  T +
Sbjct: 949  AAADVWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQ 1008

Query: 1012 GSRIGWVTFSEPAKEYEANF 1031
            G  + ++   +         
Sbjct: 1009 G--VTFINLEDETGMVNVLC 1026


>gi|308234386|ref|ZP_07665123.1| DNA polymerase III, alpha subunit [Atopobium vaginae DSM 15829]
 gi|328944202|ref|ZP_08241666.1| DNA polymerase III [Atopobium vaginae DSM 15829]
 gi|327491121|gb|EGF22896.1| DNA polymerase III [Atopobium vaginae DSM 15829]
          Length = 1302

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/1051 (30%), Positives = 521/1051 (49%), Gaps = 94/1051 (8%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC+ ++     ++     K        + LLV  A GY  L++++S         
Sbjct: 125  IKPIFGCEANLIPDQCIEKGTPQKR-----YHLTLLVKNAVGYVNLMKMMSLAA-NQMMY 178

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R   + L++   EGLI L+G + G I +         A      FK LFGD  Y+ +
Sbjct: 179  YKPRTTFAMLEKYH-EGLICLSGCAHGVIAQMIVTQQYDAARAWAQKFKALFGDDFYLEI 237

Query: 187  QRHR--------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            Q H           ++    ++VQL     + +VATN++ +  ++D E  D+L  +  +T
Sbjct: 238  QDHGVSLDSWNGMSEQMIAQRIVQLGKEEGIAVVATNDNHYFHQDDVETRDILSCIGANT 297

Query: 239  VVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             + +  +  +   + Y K+  +M ++F+ +PEA++ +V IA +CSF L      LP+F  
Sbjct: 298  HLDENYQSTLPGSEFYFKSEEQMRALFAWVPEAVDESVRIAAKCSFELDWTHMYLPKFP- 356

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                   +  E   R++   GL  +  +       +  + ++R ++E  VI    F+ YF
Sbjct: 357  --GLREGETSEERFRSECEQGLARKYGKQWQDVTINGVNVKERFEYEYGVICFKGFADYF 414

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV ++++WAK++ I VGPGRGS AG++ AYA+ IT  DPL   L+FERFL+ +R  MPD
Sbjct: 415  LIVQEYVRWAKEHGIGVGPGRGSAAGAIVAYAMDITAFDPLENGLMFERFLSLERTEMPD 474

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  +RR EV+++V+  YG +RV  +IT+ +++AK A+ D  R L  P +   +L K
Sbjct: 475  IDMDFDDERRLEVVQHVRELYGSDRVCHVITYSTIKAKQAINDAARVLGYPVATAQKLSK 534

Query: 478  LIPNDPAHPVSL-------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            ++ +DP   +         +    +  F +A   +    R+++ ++ +EG+ R    HA 
Sbjct: 535  MVSSDPKTKLKFVLSKTEGKEDMYNPDFVDAYHNNGDEHRIIDAARSIEGIIRGEGVHAC 594

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
             I+I   P++  VP   D +  + +TQ+    +   GL+K DFLGL+TLT++ K+LD + 
Sbjct: 595  AILIAPTPVNDHVPTKLDTKGGVEITQYEGHSVADMGLLKMDFLGLRTLTVISKALDNIR 654

Query: 591  -----------------------QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
                                      + +D   IPF D   + L+ +  T G+FQ+ES G
Sbjct: 655  ASYPDLSKLDSLGDGVKACLKPGATCIDIDPQKIPFTDPRIFQLVGSGRTAGVFQIESEG 714

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
            M   ++ M+P     I+AL++LYRPGP+   +V  Y NR NG+E +V     +  +L ET
Sbjct: 715  MTATIKNMKPKEFRQIVALIALYRPGPLGAGMVTSYINRMNGREPVVFYDDRLSDILDET 774

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEAD-VLRRAMGKKIKEEM------------DKQKERF 732
             G I+YQEQVMQI+  +SG+S  E+D  +R+ + KK    +            +   + +
Sbjct: 775  YGTIVYQEQVMQISVKMSGFSKGESDSKIRKPVAKKKIALLTSTIFHWENGRDETTYDHW 834

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            ++GAS NG  K +A  I++ + +FA Y FNKSH+A YA++  QTAW+K ++P E++A+ +
Sbjct: 835  MNGASANGYKKEVAQRIWDDVLEFASYAFNKSHSAGYAILVMQTAWLKAYFPREYMASVL 894

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            T  M    KI  +        I+I+PP +N    DF      I +  A I+GVG      
Sbjct: 895  TSYMGKTNKIVHYISACNHEGIKILPPDINESGRDFTATPQGIRFGFAGIRGVGENVGIA 954

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD----- 906
            IM+    + PF +L DF  RV+S + NRRV+E+L+ AGA D  GY R QL+  +D     
Sbjct: 955  IMQERKKNGPFANLHDFVKRVNSAQANRRVVEALIKAGAFDSCGYPRKQLMGFIDKNNPK 1014

Query: 907  NIQKYAQWVEKNRTNKHENIFAH----EKGTFSDKITLEKFSV-ENSSVRFENEQRVLGF 961
            NI   A   EK+R+    ++F +    E   F +KI                 E+ VLG 
Sbjct: 1015 NIIDEAARHEKDRSMGQLSLFDYFGTVEGSGFEEKIPPADPHDRWEDGFMLSQEREVLGI 1074

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVA-----------------TIRGNNIRLAAMVVS- 1003
            Y + HPL  Y+  LR+       E                       G  I LA M  + 
Sbjct: 1075 YVTDHPLRPYQVALRRSRDFTLSELEESKEVIDEQSGATHLEYKVPEGKTIHLAGMTATG 1134

Query: 1004 -KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              Q++ T+ G ++  VT  +   +     FP
Sbjct: 1135 LIQRRLTKTGKQMAIVTLEDMEGQIPLVVFP 1165



 Score = 84.6 bits (208), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 3/101 (2%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +FVHL  HS +S+L+ + S+ N++D   A    A+A+TD   +F   +F           
Sbjct: 2   AFVHLHNHSFFSVLDASTSIQNMVDAAVAQHMHALALTDHAYMFGIPDFDLACRKYNDNA 61

Query: 70  IIGCQLDIDMQ--DNLKMTNQGKTPFPT-VPSIVLLVSTAE 107
               Q   D++  +      + K   P   P         +
Sbjct: 62  ADMKQYKHDVECYEKQWDNKEPKPDDPDAAPHDRCHAQWEK 102


>gi|308371322|ref|ZP_07424578.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu003]
 gi|308372518|ref|ZP_07428948.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu004]
 gi|308376093|ref|ZP_07446045.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu007]
 gi|308377322|ref|ZP_07441858.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu008]
 gi|308378295|ref|ZP_07482143.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu009]
 gi|308329123|gb|EFP17974.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu003]
 gi|308332959|gb|EFP21810.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu004]
 gi|308344313|gb|EFP33164.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu007]
 gi|308348245|gb|EFP37096.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu008]
 gi|308352970|gb|EFP41821.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu009]
          Length = 1091

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/1040 (27%), Positives = 485/1040 (46%), Gaps = 62/1040 (5%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + +  S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A
Sbjct: 50   ERVGSSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAA 109

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                ++ + G       + +L  T + + P P  P +++L    EGY+RL   ++  +L 
Sbjct: 110  AELDVRTVFGA------ELSLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLA 163

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-R 181
               K   R     L E       +LTG   G + +A        A++ L      F   R
Sbjct: 164  GGEKGKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSR 223

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TV 239
            + + L  H    D  R + +  LA    + +V T  + F           + A+    ++
Sbjct: 224  VSIELTHHGHPLDDERNAALAGLAPRFGVGIVTTTGAHFADPSRGRLAMAMAAIRARRSL 283

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             S           +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +
Sbjct: 284  DSAAGWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPD 343

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E++ LR+  +AG   R      A   ++     +++ EL VIA+++F GYFL+
Sbjct: 344  G----HTEDSWLRSLVMAGARERYGPPKSAPRAYS-----QIEHELKVIAQLRFPGYFLV 394

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D  ++ + N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D
Sbjct: 395  VHDITRFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDID 453

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID   D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K +
Sbjct: 454  IDIESDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQV 513

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +                  +A   D   +++++++ ++  L RH   H+ G+VI DRP+
Sbjct: 514  SHWTG---------------QADDVDGIPEQVIDLATQIRNLPRHLGIHSGGMVICDRPI 558

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            + + P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VDL
Sbjct: 559  ADVCPVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDL 618

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   
Sbjct: 619  ARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGG 678

Query: 659  --VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
                Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRA
Sbjct: 679  SVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRA 738

Query: 717  M-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            M  K+  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + +
Sbjct: 739  MGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVF 798

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             +AW K H+P  F AA +  +       +    DAR+  + +  P VN         +  
Sbjct: 799  YSAWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAG 858

Query: 835  I--YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
                  L A++ +G   A  ++    A+ PF SL D  SRV     +   +E+L  AGAL
Sbjct: 859  TEVRLGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRVQL---SVPQVEALATAGAL 915

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
             CFG SR           +         T + + +      +      +      +    
Sbjct: 916  GCFGMSRR----------EALWAAGAAATGRPDRLPGVGSSSH-----IPALPGMSELEL 960

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +    G     +P    +  L  MG+   E   +   G+ + +A  V  +Q+  T +
Sbjct: 961  AAADVWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQ 1020

Query: 1012 GSRIGWVTFSEPAKEYEANF 1031
            G  + ++   +         
Sbjct: 1021 G--VTFINLEDETGMVNVLC 1038


>gi|294010399|ref|YP_003543859.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S]
 gi|292673729|dbj|BAI95247.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S]
          Length = 1090

 Score =  833 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/1045 (27%), Positives = 460/1045 (44%), Gaps = 81/1045 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  LQV S +S L GA S   +  + A     A+A+ D N+L   +   Q A   G+
Sbjct: 3    APRYAELQVTSHFSFLRGASSCEELFSQAALAGIEALAVVDRNSLAGIVRAHQAAKTTGV 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+GC                +       S+++  +    Y RL  L+S       GK 
Sbjct: 63   RLIVGC----------------RLDLVDGASMLVYPTDRSAYSRLCRLLSLGKQR-AGKA 105

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +    L   G EGLI++                      RL   +  FGDR Y+ L 
Sbjct: 106  KCHLEWPDLMAYG-EGLIVVLVPDQAD----------AECALRLRRLRDAFGDRAYLALT 154

Query: 188  -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDR 245
             R R  D+ R  ++  LA    +P V TN+ LF         DV+  + H+  +    DR
Sbjct: 155  LRRRPNDQLRIHELSNLATQMRVPTVVTNDVLFHEPARRVLQDVVTCIRHNVTIDALGDR 214

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 D Y+K   EM  +F+  PEAL  T++IA RC F L   A   P    +E DD   
Sbjct: 215  RERHADRYIKPPEEMHRLFARYPEALARTLQIADRCRFNLDELAYQYP----EERDDPAL 270

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L      G   R  +G              L  EL +I ++ ++ YFL V   ++
Sbjct: 271  TPQETLAKLTWEGAAQRYPEGV------PDSVIAALRHELRLIEKLGYAPYFLTVNAIVR 324

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S   Y L IT IDP R  LLFERF++ +R   PD D+DF  +
Sbjct: 325  FARSKDI-LCQGRGSAANSAVCYVLGITSIDPGRNDLLFERFVSEERREPPDIDVDFEHE 383

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+ V+++V + YG +  A   T    + K ALRDVG+AL +P   +  L   +      
Sbjct: 384  RREIVMQWVFDTYGRDHAALCSTVIRYRTKGALRDVGKALGLPEDLIGTLSSQVWAWSEE 443

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             V  + +          LAD  +   L+++++L G  RH S H  G V+    L  LVP+
Sbjct: 444  GVEQRHVEA----LNLNLADRRLRLTLDLARQLMGAPRHLSQHPGGFVLTHDRLDDLVPI 499

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                  D  V +++   I+    +K D L L  LT ++K LD LA+   V +DL+ IP +
Sbjct: 500  EPAAMKDRQVIEWDKDDIDALKFMKVDVLALGMLTCMKKGLDLLAEHKGVNLDLASIPAE 559

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y 
Sbjct: 560  DPRTYAMIRKADTLGTFQIESRAQMSMLPRLKPRTYYDLVVQVAIVRPGPIQGDMVHPYL 619

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+ G E +    P ++ +L +T GV ++QEQ M++A   +G++  EAD+LR++M   K 
Sbjct: 620  RRREGLEPVHYPKPELEKVLGKTLGVPLFQEQAMRVAIECAGFTPGEADMLRKSMATFKF 679

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               +   +++ I+G   NG  +  A   F+ L  F  YGF +SHAA++A+I+Y +AW+K 
Sbjct: 680  TGGVSHFRDKLIAGMVANGYEQAFAEQTFKQLEGFGSYGFPESHAASFALIAYASAWLKC 739

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRI 835
             +P  F AA +  +        +  +DA +  + + P   N    D  +          +
Sbjct: 740  WHPDVFCAALLNSQPMGFYAPAQIVRDAIEHGVDVRPVCANASRWDCTLEPTSDESRYAV 799

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  +KG+  T    I+ A AD+P+ S++D   R          L  L  A A     
Sbjct: 800  RLGLRMVKGLANTHGAAIVSARADQPYTSIDDLWRRA---GAPSAALVQLAEADAFR--- 853

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--------KGTFSDKITLEKFSVEN 947
                    +L   ++ A W  K   ++   +FA                 + L   +   
Sbjct: 854  -------PALGLARREALWAIKALRDEPLPLFAAASAREAGAIPEIDEPAVALRPMTAGG 906

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              V    +   +G     HPL   +  L++  I    E++A   G  +  A +V+ +Q+ 
Sbjct: 907  EVV---EDYGHVGLTLRTHPLSFLREDLQRRRIVTCAEAMAARDGRWVEAAGIVLVRQRP 963

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             + KG  + ++T  +         +
Sbjct: 964  GSAKG--VMFITLEDETGIANLVVW 986


>gi|296115453|ref|ZP_06834087.1| DNA polymerase III, alpha subunit [Gluconacetobacter hansenii ATCC
            23769]
 gi|295978026|gb|EFG84770.1| DNA polymerase III, alpha subunit [Gluconacetobacter hansenii ATCC
            23769]
          Length = 1058

 Score =  833 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1038 (27%), Positives = 465/1038 (44%), Gaps = 72/1038 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  LQV + +S L GA S   + ++  A    A++I D N+L   ++    A A G++
Sbjct: 6    PCYAELQVTTYFSFLRGASSPIELFEQAKALGIEALSICDRNSLAGMVQAYGAAKATGVR 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++GC                +      P++++  +    Y RL  L++       GK  
Sbjct: 66   LVVGC----------------RIDLADFPAVLVYPTDRAAYGRLCRLLTIGKAR-AGKGK 108

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +    L   G   +I++   ++                  L   K  F DR Y+ L  
Sbjct: 109  CHLLWEDLVAWGEGLIIVMVPDTA-----------DDACALHLRKLKDAFADRAYMALTL 157

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
              R  D+ R  ++  LA    +P V TN+ LF + +     DV+  + H+T + +     
Sbjct: 158  LRRPNDQMRLYELANLAQQAHVPTVVTNDVLFHTHDRRILQDVVTCIRHNTTIDEAGFVR 217

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                D YLK   EM  +FS  PEA+  TV+I  RC F L   A   P     E     + 
Sbjct: 218  ERHADRYLKPPQEMARLFSRYPEAVARTVQIVERCHFSLDDLAYQYP----DEVSVPGQT 273

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L             +G         + R+ L+ EL +I RM ++ YFL V   +++
Sbjct: 274  PQQALEALTWEAAARTYPEGI------PDEVRKSLNHELGLIGRMAYAPYFLTVNSIVRY 327

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A S   Y L IT IDP R SLLFERF++ +R   PD D+DF   R
Sbjct: 328  ARSQDI-LCQGRGSAANSAVCYVLGITAIDPARNSLLFERFVSEERGEPPDIDVDFEHAR 386

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R++VI++V   YG +R A        +AK ALRDVG+ + +P   +  L   I +     
Sbjct: 387  REQVIQWVYEHYGRDRAALTAVVIRYRAKGALRDVGKVMGLPEDLIRTLSGQI-HGWGRT 445

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A+ D        L+D  +   L++++ L G  RH S H  G V+    L +LVP+ 
Sbjct: 446  LDDDALTDSG----IDLSDRRIRLTLDLARCLIGTPRHLSQHPGGFVLTHDRLDELVPIE 501

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                    + +++   I+    +K D L L  LT ++K LD LA+       L  +P +D
Sbjct: 502  PASMEARQIIEWDKDDIDVLKFMKVDILALGMLTCMKKGLDLLAEHKGQHFTLQTLPAED 561

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
              TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  
Sbjct: 562  PRTYAMIRKADTIGVFQIESRAQMSMLPRLKPRVFYDLVIEVAIVRPGPIQGDMVHPYLR 621

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+ G E      P ++ +LK+T G+ ++QEQ MQ+A + +G++ +EAD LRRAM   K  
Sbjct: 622  RREGIEPEDYPTPELEKVLKKTLGIPLFQEQAMQVAMICAGFTAAEADQLRRAMATFKNT 681

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              + + + R I+G   NG  +  A  I+  L  F  YGF +SHAA++A+++Y ++WMK  
Sbjct: 682  GTVSQFQTRLINGMRANGYDEEFAERIYLQLEGFGSYGFPESHAASFAILAYSSSWMKCT 741

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------GDNRI 835
            +P  FLA+ +  +        +  +DAR+  ++I P  VN    D  +       G   +
Sbjct: 742  HPDVFLASLLNSQPMGFYAPAQLVRDAREHGVEIRPVCVNASRWDSTLEGPESPNGMFAV 801

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               ++ +KG+    A  I+ A   +PF S++D   R   K      L  L  A A     
Sbjct: 802  RLGMSLVKGLANDDAARIVAARDSRPFTSIDDLWRRAGVKA---AALTHLAEADAFR--- 855

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
                    SL   ++ A W  +   ++   +FA  + T   +                 +
Sbjct: 856  -------PSLGLARREALWAIRVLRDEPLPLFAAAQITREAEEPDVLLQPMRDGAEVVRD 908

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
               LG     HPL   +  L++  I    +++A   G  + +A +V+ +Q+  + +G  +
Sbjct: 909  YNRLGLTLRDHPLTFLREDLQERDIMSCRQALAAKDGKRLTVAGLVLVRQRPGSAEG--V 966

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++T  +         +P
Sbjct: 967  VFMTLEDETANMNVIIWP 984


>gi|296168813|ref|ZP_06850495.1| DNA-directed DNA polymerase [Mycobacterium parascrofulaceum ATCC
            BAA-614]
 gi|295896516|gb|EFG76163.1| DNA-directed DNA polymerase [Mycobacterium parascrofulaceum ATCC
            BAA-614]
          Length = 1080

 Score =  833 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/1041 (26%), Positives = 480/1041 (46%), Gaps = 61/1041 (5%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             +    S  +  L  HS++S L+GA +   ++++ A     A+A+TD + L+ A+ F++ 
Sbjct: 37   ARGARSSVPYAELHAHSAFSFLDGASTPEELVEEAARLGLRALALTDHDGLYGAVRFAEA 96

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A    ++ + G +L +            +TP P  P +++L    EGY+RL   ++  +L
Sbjct: 97   AAELELRTVFGAELSLGPGART------ETPDPPGPHLLVLARGPEGYRRLSRQLAAAHL 150

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GD 180
                K   R     L E       +LTG   G + +A        A + L      F  D
Sbjct: 151  AGGEKGKPRYDFDALTEAAGGHWHILTGCRKGHVRQA-LSQGPDAAGRALADLVDRFGAD 209

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HST 238
            R+ + L  H    D  R + +  LA    + +VAT  + F           + A+    +
Sbjct: 210  RVSIELTHHGQPPDDERNAALAGLAPRFGVGVVATTGAHFAGPSRRRLAMAMGAIRARQS 269

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            + +           +L++  EM  +F+  P+A+    ++  +C+F L + AP LP F   
Sbjct: 270  LDAAAGWLAPLGGSHLRSGEEMARLFAWRPDAVTAAADLGEQCAFGLALIAPRLPPFDVP 329

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                    E++ LR   + G   R      A    +     +++ EL VIAR++F GYFL
Sbjct: 330  AG----HTEDSWLRQLTMTGARGRYGTPDAAPRAFS-----QIEHELKVIARLQFPGYFL 380

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D  ++ ++NNI +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD 
Sbjct: 381  VVHDIARFCRENNI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDI 439

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+D   D+R++VI+YV +KYG +  AQ+    + + + A+RD+ RAL     Q D   K 
Sbjct: 440  DMDIESDQREKVIQYVYDKYGRDYAAQVANVITYRGRIAVRDMARALGFSQGQQDAWSKQ 499

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            + +                  ++   +    ++++++ ++  L RH   H+ G+VI DRP
Sbjct: 500  LGHWNG-------------LADSPDVEGIPPQVVDLANQIRNLPRHMGIHSGGMVICDRP 546

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
            ++ + P+     ++  V Q++       GL+KFD LGL  L+ L  ++D +A+   ++VD
Sbjct: 547  IADVCPVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVD 606

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI  
Sbjct: 607  LARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRIFYDLVVEVALIRPGPIQG 666

Query: 658  I--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
                 Y  R+NG + +V  HP ++P L++T GV ++QEQ+MQ+A   +G+S +EAD LRR
Sbjct: 667  GSVHPYIRRRNGLDPVVYDHPSMEPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRR 726

Query: 716  AM-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            AM  K+  E M + ++RF  G    +G +  +    +E L  FA++GF +SHA ++A + 
Sbjct: 727  AMGSKRSTERMRRLRDRFYDGMRALHGATDEVIDRAYEKLEAFANFGFPESHALSFASLV 786

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            + ++W K H+P  F AA +  +       +    DAR+  + +  P VN       + + 
Sbjct: 787  FYSSWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHATLENA 846

Query: 834  RI--YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                   L A++ +G   A  ++    A+ PF SL D  +R+     +    E+L  AGA
Sbjct: 847  GTEVRLGLGAVRHIGDDLAERLVAERKANGPFASLLDLTTRLQL---SVPQTEALATAGA 903

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
              CFG SR + L +       A     +R     +              +      +   
Sbjct: 904  FGCFGMSRREGLWAAG----AAATQRPDRLPGVGS-----------SSHVPALPGMSELE 948

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +    G     +P    +  L  MG+    + +    G+ + +A  V  +Q+  T 
Sbjct: 949  LAAADVWATGVSPDSYPTQFLRADLDAMGVVPAGKLLDVPDGDRVLIAGAVTHRQRPGTA 1008

Query: 1011 KGSRIGWVTFSEPAKEYEANF 1031
            +G  + ++   +         
Sbjct: 1009 QG--VTFLNLEDETGMVNVLC 1027


>gi|121639297|ref|YP_979521.1| error-prone DNA polymerase [Mycobacterium bovis BCG str. Pasteur
            1173P2]
 gi|224991794|ref|YP_002646483.1| error-prone DNA polymerase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|121494945|emb|CAL73431.1| Probable dna polymerase III (alpha chain) dnaE2 [Mycobacterium bovis
            BCG str. Pasteur 1173P2]
 gi|224774909|dbj|BAH27715.1| error-prone DNA polymerase [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 1079

 Score =  833 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1040 (27%), Positives = 486/1040 (46%), Gaps = 62/1040 (5%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + +  S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A
Sbjct: 38   ERVGSSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAA 97

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                ++ + G       + +L  T + + P P  P +++L    EGY+RL   ++  +L 
Sbjct: 98   AELDVRTVFGA------ELSLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLA 151

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-R 181
               K   R     L E       +LTG   G + +A        A++ L      F   R
Sbjct: 152  GGEKGKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSR 211

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TV 239
            + + L  H    D  R + +  LA    + +VAT  + F           + A+    ++
Sbjct: 212  VSIELTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSL 271

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             S           +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +
Sbjct: 272  DSAAGWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPD 331

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E++ LR+  +AG   R      A   ++     +++ EL VIA+++F GYFL+
Sbjct: 332  G----HTEDSWLRSLVMAGARERYGPPKSAPRAYS-----QIEHELKVIAQLRFPGYFLV 382

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D  ++ + N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D
Sbjct: 383  VHDITRFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDID 441

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID   D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K +
Sbjct: 442  IDIESDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQV 501

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +                  +A   D   +++++++ ++  L RH   H+ G+VI DRP+
Sbjct: 502  SHWTG---------------QADDVDGIPEQVIDLATQIRSLPRHLGIHSGGMVICDRPI 546

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            + + P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VDL
Sbjct: 547  ADVCPVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDL 606

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   
Sbjct: 607  ARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGG 666

Query: 659  --VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
                Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRA
Sbjct: 667  SVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRA 726

Query: 717  M-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            M  K+  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + +
Sbjct: 727  MGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVF 786

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             +AW K H+P  F AA +  +       +    DAR+  + +  P VN         +  
Sbjct: 787  YSAWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAG 846

Query: 835  I--YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
                  L A++ +G   A  ++    A+ PF SL D  SRV     +   +E+L  AGAL
Sbjct: 847  TEVRLGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRVQL---SVPQVEALATAGAL 903

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
             CFG SR           +         T + + +      +      +      +    
Sbjct: 904  GCFGMSRR----------EALWAAGAAATGRPDRLPGVGSSSH-----IPALPGMSELEL 948

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +    G     +P    +  L  MG+   E   +   G+ + +A  V  +Q+  T +
Sbjct: 949  AAADVWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQ 1008

Query: 1012 GSRIGWVTFSEPAKEYEANF 1031
            G  + ++   +         
Sbjct: 1009 G--VTFINLEDETGMVNVLC 1026


>gi|170697435|ref|ZP_02888526.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria IOP40-10]
 gi|170137614|gb|EDT05851.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria IOP40-10]
          Length = 1049

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1035 (27%), Positives = 474/1035 (45%), Gaps = 59/1035 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AA + 
Sbjct: 10   PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAANMP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             II          + ++T     P     ++       +GY  L E +S   +  + K +
Sbjct: 70   LII--------GSHFRLTAADGAPALAFTAL---AMNRDGYGNLCEFISLGRMRGK-KGT 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    ++        + T      I    F  + Q  + ++  F ++FGDR +V L  
Sbjct: 118  YRLAPLDVEHPEAPFTHLRTLPDCIAILSPDFPANEQRLDAQVEWFARVFGDRAWVALTL 177

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H R  D      V ++A  H +P+VAT+  L          DVL  +     V++     
Sbjct: 178  HARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGRPVTECGYEL 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  + +++     ALE TV +ARRC+F L       P  +     D    
Sbjct: 238  APNAERHLRSRLRLANLYP--AGALEETVRVARRCTFSLDDLKYEYPDELVPAGTDATT- 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR +   G   R   G         D + +++ EL +IA +K+  YFL V D +Q+
Sbjct: 295  ---YLREQTYIGARRRFPAGI------PIDVQAQIEHELQLIADLKYEAYFLTVYDIVQF 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I +  GRGS A S   Y L +T++DP R S+LFERF++ +R   PD D+DF   R
Sbjct: 346  AREQGI-LCQGRGSAANSSVCYCLGVTEVDPSRQSMLFERFISKERNEPPDIDVDFEHQR 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++Y+  KYG +R A      + + ++ALR+ G+AL +  + VDR+ K      +  
Sbjct: 405  REEVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDPAIVDRVAKQHHWFDSRA 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              LQ  A+     EA    P   +    + +L G  RH S H+ G VI    L++LVP+ 
Sbjct: 465  DLLQRFAEAGLDPEA----PLNQQWAGFAAQLLGYPRHLSQHSGGFVISRGKLTRLVPVE 520

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                 D  + Q++   IE  G++K D L L  L++++++LD +  +RG   +L  IP +D
Sbjct: 521  NAAMEDRSIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISEKRGETFELEDIPAED 580

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
              TY +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGP+   +   +  
Sbjct: 581  MATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQGGMVHPFLR 640

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+ G E +      ++  L  T GV I+QEQVMQ+A L +G+S  EAD LRRAM   K K
Sbjct: 641  RRQGLEPVTFPSEGMEKALARTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKRK 700

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              ++   ER +SG  + G  +  A +IF  +  F +YGF +SHAA++A++ Y +AW++ H
Sbjct: 701  GGLEPYHERLVSGMLERGYDREFAESIFAQIKGFGEYGFPESHAASFALLVYSSAWLRRH 760

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI----YYS 838
             P  FLAA +  +        +  QDAR+  ++++P  VN    D  +            
Sbjct: 761  EPGVFLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSAIEGPTTSAPVRLG 820

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             + ++G+    A  +  A A +PF  + D   R    + + +VL              +R
Sbjct: 821  FSLLRGMREDVAGRVELARAARPFVDVADLARRARLDRHDLQVL--------------AR 866

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
               L+SL    + A            ++    +GT  D   +      +       + R 
Sbjct: 867  ANALRSLAGGNRRAALWLAAAAVPDRDLL---RGTERDD-AVPALPQASEGKEIVTDYRA 922

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +GF    HPL + +  L    ++  ++      G   R   +V  +Q+  T  G  + ++
Sbjct: 923  MGFTLGRHPLALLRDRLTLDRLQPADQLATLRSGQLARACGLVTVRQRPGTANG--VLFM 980

Query: 1019 TFSEPAKEYEANFFP 1033
            T  +   +     +P
Sbjct: 981  TLEDETGQVNVILWP 995


>gi|229489515|ref|ZP_04383378.1| DNA polymerase III, alpha subunit family [Rhodococcus erythropolis
            SK121]
 gi|229323612|gb|EEN89370.1| DNA polymerase III, alpha subunit family [Rhodococcus erythropolis
            SK121]
          Length = 1072

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/1034 (27%), Positives = 471/1034 (45%), Gaps = 63/1034 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS++S L+GA     ++++       AIA+TD +  +  + F++ A   G++ 
Sbjct: 37   PYAELHAHSAFSFLDGASPPEELVEEAVRLGLEAIAVTDHDGFYGVVRFAEAAREWGMRT 96

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + G       + +L    +  T  P    +++L    EGY+RL   ++  +L    K  +
Sbjct: 97   VFGA------ELSLDSVPRTGTADPGGTHLLVLARGQEGYRRLSREIAAAHLAGGEKGKL 150

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            +     L E       +LTG   G + +A      + A   L    + F  +R+ V L  
Sbjct: 151  QYDYDVLTEAAGGHWQILTGCRKGHVRQALTSGGREAAADALGDLVERFGAERVSVELTH 210

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRP 246
            H    D  R + + +LA  H L  VAT  + F +         + AV     + +     
Sbjct: 211  HGLAEDDERNAVLAELAREHGLRTVATTAAHFAAPPRRRLAMAMAAVRSRQSLDEAAGWL 270

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T   +L++ +EM ++FS  PEA+    ++ R C+F L++ AP LP F           
Sbjct: 271  APTGGAHLRSGAEMAALFSLYPEAVSGAADLGRECAFDLKLIAPKLPPFDVPAG----HT 326

Query: 307  EENELRNKAVAGLEVRL-AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            E + LR   + G   R        K Y      ++L+ EL +I  + F GYFL+V D + 
Sbjct: 327  EASWLRELTMVGALERYGPPEGAPKAY------KQLEHELAIIEGLNFPGYFLVVHDIVS 380

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            + K N+I +  GRGS A S   YA+ IT++DP+R  LLFERFL P+R   PD D+D   D
Sbjct: 381  FCKNNDI-LCQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLAPERDGPPDIDVDIESD 439

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+E I++V  KYG    AQ+    + + K+++RD+ RAL     Q D   K +      
Sbjct: 440  RREEAIQHVYAKYGRTYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSKQVGRWGG- 498

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +   A  D  R             +LE++ ++EG  RH   H+ G+VI DRP++ + P+
Sbjct: 499  -IDKNADTDIPRP------------VLELAAQIEGYPRHLGIHSGGMVICDRPIADVCPV 545

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                 ++  V Q++      AGL+KFD LGL  L+ L   +D +A+   + VDL+ +   
Sbjct: 546  EWARMANRSVLQWDKDDCAAAGLVKFDLLGLGMLSALHYMMDLVAEHKGITVDLAQLDLS 605

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYN 662
            +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI       Y 
Sbjct: 606  ETAVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVHPYI 665

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKI 721
             R+N  E +   HP ++  L+ T GV ++QEQ+MQ+A  ++G++ SEAD LRRAM  K+ 
Sbjct: 666  RRRNKLEPVSYDHPSLEKALERTLGVPLFQEQLMQMAVDVAGFTPSEADQLRRAMGSKRS 725

Query: 722  KEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             E+M++ + RF  G    +GI   +A  I+E L  FA++GF +SH+ ++A + + ++W K
Sbjct: 726  TEKMEQLRARFYQGMRDLHGIGDEVADRIYEKLYAFANFGFPESHSQSFAALVFYSSWFK 785

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIYYS 838
             H+P  F A  +  +       +    DAR+  +Q+    +N       V  G   +   
Sbjct: 786  LHHPAAFCAGLLRAQPMGFYSPQSLVADARRHGVQVHGADINVSLAHATVEAGGFEVRLG 845

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L  ++ +G   A  I+E      PF S  D   RV+         ESL  AGAL  FG S
Sbjct: 846  LGEVRNIGDALAEKIVEQRDLGGPFTSFLDLTGRVELT---TAQAESLATAGALASFGIS 902

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R + L         A      R ++   I A         +T       +       +  
Sbjct: 903  RREALW-------AAGAAAGERPDRLPGIGAS--------VTAPTLPGMSDVELAAADVW 947

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G     +P    +P L  +G+      +    G+ + +   V  +Q+  T  G  + +
Sbjct: 948  ATGVSPDTYPTQFLRPQLDALGVVPASRLLDIPDGDRVLVGGAVTHRQRPATAAG--VTF 1005

Query: 1018 VTFSEPAKEYEANF 1031
            +   +         
Sbjct: 1006 INLEDETGMVNVVC 1019


>gi|188591403|ref|YP_001796002.1| Error-prone DNA polymerase [Cupriavidus taiwanensis]
 gi|170938798|emb|CAP63795.1| Error-prone DNA polymerase [Cupriavidus taiwanensis LMG 19424]
          Length = 1050

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/1037 (27%), Positives = 451/1037 (43%), Gaps = 62/1037 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     + ++ A     A+AITD  +L   +    +A  AG++
Sbjct: 10   PDYAELHCLSNFSFLTGASRPEELAERAAQLGYHALAITDECSLAGIVRAHTEAKKAGMR 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D                S+V L    EGY  L EL++   +    K S
Sbjct: 70   LVVGASFHLQNADG-----------SPALSVVALARNREGYGNLCELITLARMR-AAKGS 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +    L         +        I    +   +   + +       F  R ++ L  
Sbjct: 118  YVLTPRDLAAPEAPHQHLKGLPDCLIIFTPDYGAPADRLDLQAAWVSATFAGRAWMGLNL 177

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             +R  D      V   A  H L +VAT              DVL A+     V +     
Sbjct: 178  LYRPLDDIHRGTVEAAAARHHLRVVATGCVTMHVRSRKPMLDVLTAIRVGRPVPECGYDL 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  + +I+      L   V IA  C F L       P  +  +       
Sbjct: 238  APNAEQHLRSRLRLANIYPH--RYLTEAVHIANLCQFSLDELRYEYPDEVVPDG----TT 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR +  AG   R   G           +Q+++ EL ++  M +  YFL V+D +++
Sbjct: 292  PADYLRTETYAGAHRRFPAGI------PLAVQQQIEHELALVRDMDYERYFLTVSDIVRF 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ N I +  GRGS A S   Y L IT++DP R +LLFERF++ +R   PD D+DF   R
Sbjct: 346  ARSNGI-LCQGRGSAANSAICYCLGITEVDPARGNLLFERFISKERGEPPDIDVDFEHQR 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG +R A      + + ++ALRD G+AL +  + VD + K         
Sbjct: 405  REEVIQYLYRKYGRDRAALAAAVTTYRPRSALRDTGKALGVDPAIVDLVAKSHHWFDGKA 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L+  A+     EA L+     R   ++  L G  RH S H  G V+    LS+LVP+ 
Sbjct: 465  DLLKRFAESGVDAEAELS----QRWAHMAVSLLGFPRHLSQHTGGFVLARGKLSRLVPIE 520

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                +D  V Q++   ++  GL+K D L L  L+ ++++LD +A QRG   +L  IP +D
Sbjct: 521  NAAMADRSVIQWDKDDLDALGLLKVDVLALGMLSAVRRALDLVAEQRGEAFELQDIPAED 580

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
            H TY ++    T+G+FQ+ES      L  +QP    D++  V++ RPGP+   +   Y  
Sbjct: 581  HATYEMICRADTVGVFQIESRAQMSMLPRLQPRTFYDLVIEVAIVRPGPVQGGMVHPYLR 640

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+ G E +      ++  L  T GV I+QEQVMQ+A L +G+S  EAD LRRAM   K K
Sbjct: 641  RRQGFEPVTYPSAAMEKALSRTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKRK 700

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +DK  +R +SG  + G  +  A +IF  +  F +YGF +SHAA++A++ Y +AW+K H
Sbjct: 701  GGIDKYYDRIVSGMLERGYDREFAESIFRQIQGFGEYGFPESHAASFALLVYASAWLKCH 760

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------RIY 836
             P  FL A +  +        +  QDA++  + ++P  V     D  +          + 
Sbjct: 761  EPEAFLCAMLNSQPMGFYTPSQLVQDAKRHGVTVLPADVAVSGWDSALEPFHAGSRPAVR 820

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L+ ++G+    A+ I EA A +PF S  +   R    + + +VL S            
Sbjct: 821  LGLSLLRGMRREAAQRIEEARAIRPFASTAELARRAALDRHDLQVLASG----------- 869

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
                 L S+   ++ A W         + + A E    S ++                + 
Sbjct: 870  ---NALASITGGRRQALWQAAAAVPDKDMLRATELAEESAELV-----PATEGEEIVGDY 921

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            R +G     HPL + +P+L         E          R A +V  +Q+  T  G  + 
Sbjct: 922  RAMGLTLRRHPLALLRPMLSARRFVSAAELAQYQPRQTARAAGLVTVRQRPSTSNG--VI 979

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++T  +         +P
Sbjct: 980  FMTLEDETGVVNVIVWP 996


>gi|120402538|ref|YP_952367.1| error-prone DNA polymerase [Mycobacterium vanbaalenii PYR-1]
 gi|119955356|gb|ABM12361.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium
            vanbaalenii PYR-1]
          Length = 1098

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/1037 (27%), Positives = 484/1037 (46%), Gaps = 60/1037 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E S  +  L  HS+YS L+GA +   ++++ A     AIA+TD + L+  + F++ A   
Sbjct: 58   ESSTPYAELHAHSAYSFLDGASTPEELVEEAARLNLRAIALTDHDGLYGVVRFAEAAREL 117

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
             +  + G +L +       +      P P  P +++L    EGY+RL   ++  +L    
Sbjct: 118  DVATVFGAELSLGGGTRTDV------PDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGE 171

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYV 184
            K  +R     L E       +LTG   G + +A      + AE  L      F  DR+ V
Sbjct: 172  KGVLRYDFDALTEAAGGHWQILTGCRKGHVRQALSTGGPEAAEAALADLVDRFGPDRVTV 231

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L  H    D  R + +  LA    L +VAT  + F           + A+     + + 
Sbjct: 232  ELTHHGHPLDDERNAALAALAPRFGLGVVATTAAHFAEPARGRLAMAMGAIRARNSIDEA 291

Query: 244  -DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                      +L++  EM  +F+  PE +    E+  +C+F L + AP LP F   +   
Sbjct: 292  AGYLAPLGGSHLRSGDEMARMFAHCPEVVTAAAELGEQCAFGLALIAPQLPPFDVPDG-- 349

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                E + LR+  + G   R   G   +   A     +++ EL VI ++ F GYFL+V D
Sbjct: 350  --HTESSWLRHLVMQGARERY--GPPERASRA---YAQIEHELAVIEQLNFPGYFLVVHD 402

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
              ++ + NNI +  GRGS A S   YAL +T++DP+   LLFERFL+P R   PD DID 
Sbjct: 403  ITRFCRDNNI-LSQGRGSAANSAVCYALKVTNVDPIANDLLFERFLSPARDGPPDIDIDI 461

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D R+  I+YV  +YG E  AQ+    + + ++A+RD+ RAL     Q D   K +   
Sbjct: 462  ESDLRENAIQYVYQRYGREYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQVSQW 521

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                             +A   +     ++++++++  L RH   H+ G+VI DRP++ +
Sbjct: 522  -------------GNLADATHVEDIPGPVVDLAKQISNLPRHMGIHSGGMVICDRPIADV 568

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601
             P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+   ++VDL+ +
Sbjct: 569  CPVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDLAKL 628

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--V 659
               +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI      
Sbjct: 629  DLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRMFYDLVVEVALIRPGPIQGGSVH 688

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-G 718
             Y  R+NG+E +   HP ++  L++T GV ++QEQ+MQ+A   +G++ +EAD LRRAM  
Sbjct: 689  PYIKRRNGQEAVTYDHPSMESALRKTLGVPLFQEQLMQLAVDCAGFTPAEADQLRRAMGS 748

Query: 719  KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            K+  E+M + + RF  G ++ +G++  +A  I+E L  FA++GF +SH+ ++A + + ++
Sbjct: 749  KRSTEKMRRLRGRFFDGMAELHGVTGDVAQRIYEKLEAFANFGFPESHSLSFASLVFYSS 808

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--I 835
            W K H+P  F AA +  +       +    DAR+  + +  P VN       + ++   +
Sbjct: 809  WFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVVVHGPDVNAGLAHATLENHGLDV 868

Query: 836  YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               L  ++ +G   A  ++ E  A  PF SL D   RV     +    E+L  AGAL CF
Sbjct: 869  RLGLGGVRHIGDELAERLVGERKAHGPFTSLTDLTRRVQL---SVPQTEALATAGALGCF 925

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            G +R + L +       A     +R            G+ S   +L   +    +V    
Sbjct: 926  GITRREGLWAAG----AAATERPDRLPG--------VGSSSHVPSLPGMTELELTV---A 970

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +    G     +P +  +  L  MG+   ++ ++   G  + +A  V  +Q+  T +G  
Sbjct: 971  DVWATGVSPDRYPTEFLREDLDAMGVVPADQLLSLPDGTRVLVAGAVTHRQRPATAQG-- 1028

Query: 1015 IGWVTFSEPAKEYEANF 1031
            + ++   +         
Sbjct: 1029 VTFMNLEDETGMVNVLC 1045


>gi|302187800|ref|ZP_07264473.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae 642]
          Length = 1031

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1042 (26%), Positives = 460/1042 (44%), Gaps = 84/1042 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  +  L   S++S   GA S + + ++       A+AITD   L   +   Q + + G+
Sbjct: 2    TSEYAELHCLSNFSFQRGASSASELFERALRHGYKALAITDECTLAGIVRAWQASTSTGL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
              I+G ++ I+                  P +VLLV    GY+ L  L++      + K 
Sbjct: 62   PLIVGSEMHIENG----------------PKVVLLVENQTGYEALCRLITVARRRAK-KG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+      E   +GL+ L                +Q          + F +RL++ + 
Sbjct: 105  EYRLLREDF-EPAPDGLLAL--------WLPDLDGDAQACLADGRWLCERFAERLWLGVG 155

Query: 188  RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             HRG D   R + ++ LA +  +P VA+ +    +       D + A+ H T V++    
Sbjct: 156  LHRGPDDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEAGHL 215

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +L+    +   + D    L  +V IARRC+F L       P  +  +     +
Sbjct: 216  LFANGERHLRPLDVLSEHYPDW--LLAESVRIARRCTFDLGDLKYEYPHELVPKG----Q 269

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     G+  R   G           R +++ EL +IA  KF  YFL V D ++
Sbjct: 270  TPTSWLRELTERGVRRRWPGGLTPAT------RAQVEKELALIAEKKFDSYFLTVHDIVE 323

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  D
Sbjct: 324  FARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISRERNEPPDIDVDFEHD 382

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L +        
Sbjct: 383  RREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPDQINALAEAFSRWS-- 440

Query: 486  PVSLQAIADDSRFREARLAD--PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                 ++    R RE       P + R+L ++ +L G  RH S H  G VI + PL  LV
Sbjct: 441  ----DSLPSPERLREYGFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLDTLV 496

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602
            P+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P
Sbjct: 497  PVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGQRWTLATLP 556

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             DD +TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  
Sbjct: 557  GDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHP 616

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+NG+E +    P ++ + K T GV ++QEQVM++A L + Y+  EAD LRRAM   
Sbjct: 617  YLRRRNGEEAVTYP-PKLESVFKRTLGVPLFQEQVMEVAILAADYTPGEADELRRAMAAW 675

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    ++  +ER   G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W+
Sbjct: 676  KRHGGLEPHRERLRKGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWL 735

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------- 832
            K H P  F  A +           +  QDAR+ +I+I P  V     D  +         
Sbjct: 736  KCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHSDST 795

Query: 833  --NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                I   L  ++G     A  I  A A +PF    D   R +    + R  E+L  +GA
Sbjct: 796  RNLAIRLGLRMVRGFREEDALRIEAARAKRPFVDATDLTLRAEL---DSRAAEALADSGA 852

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            L      R +    +  +                 +F       +  I      +   + 
Sbjct: 853  LRGLIGHRHRARWEVAGV------------EAQRPLFDDLPSEETQVI----LPLPTVAE 896

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +   LG     HPL + +  L     +  ++ +       + +A +V+ +Q+  T 
Sbjct: 897  DLVADYTTLGTTLGPHPLALLRRQLAAKRFRSSQDLLHLENDRTLSVAGLVIGRQRPGTA 956

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G  + +VT  +         +
Sbjct: 957  SG--VTFVTLEDEFGMVNVVVW 976


>gi|295676323|ref|YP_003604847.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1002]
 gi|295436166|gb|ADG15336.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1002]
          Length = 1049

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/1037 (25%), Positives = 455/1037 (43%), Gaps = 62/1037 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S+++ L GA     +  + A     A+AITD  +L   +     A  A + 
Sbjct: 9    PAYAELFCFSNFTFLRGASHAEELAQRAAQLGYSALAITDECSLAGVVRAHVAAKEAKLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+            ++ N   +P      ++LL     GY  L EL++   +    K  
Sbjct: 69   FIV--------GSYFRLVNADGSP---AFGLILLARNRNGYGNLSELITLARMR-APKGE 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L     E   +L       I    F  S    + ++    + F  R +V L  
Sbjct: 117  YRLTPQDLSRPEKEYRHLLGMPDCLAILVPDFPASEDALDAQVEWLDETFTGRAWVGLVL 176

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H R  D      V  +A + ++P+VA    +          D + A+     V +     
Sbjct: 177  HQRAMDDMHRGAVEFVAKSRDVPVVALGEVVMHVRSRKPLQDTMTAIRVGKPVHECGYDL 236

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  + +++ +  +AL  TV+I  RC+F L       P     E       
Sbjct: 237  APNAEQHLRSRLRLANLYPE--DALAATVDIMSRCTFSLDELRYEYP----DELVPAGHT 290

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR +   G + R   G           +Q+++ EL +IA +++  YFL V D +++
Sbjct: 291  PASYLRQETYIGAQRRFPAGI------PHHVQQQIEHELELIADLQYEPYFLTVYDIVRF 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A S   Y L +T++DP R ++LFERF++ +R   PD D+DF   R
Sbjct: 345  ARSQHI-LCQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEPPDIDVDFEHQR 403

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG +R A      + + + ALR+ G+AL +    VD + K         
Sbjct: 404  REEVIQYIYRKYGRDRAAIAAAVSTYRPRGALRETGKALGVDPQIVDAVAKSHHWFDTSR 463

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L   A+           P +    +++ +L    RH S H+ G VI    L++LVP+ 
Sbjct: 464  DLLARFAESG----LDPDKPLIQAWAKLASQLLNFPRHLSQHSGGFVISRGKLTRLVPVE 519

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                +D  V +++   +E  GL+K D L L  L+ ++++LD +  QRG + ++  IP +D
Sbjct: 520  NAAMADRSVIEWDKDDLESLGLLKVDVLALGMLSAIRRTLDLVSEQRGERFEMQDIPSED 579

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
              TY +++   T+G+FQ+ES      L  M+P    D++  V++ RPGPI       Y  
Sbjct: 580  PATYAMISAADTVGVFQIESRAQMSMLPRMRPRTFYDLVIEVAIVRPGPIQGGAVHPYLQ 639

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+ G E +      +   L  T GV I+QEQVMQ+A L +G++  EAD LRRAM   K K
Sbjct: 640  RRQGFEPVTYPSDALKTALGRTLGVPIFQEQVMQVAILAAGFTAGEADQLRRAMAAWKRK 699

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              ++K  +R + G  + G  +  A  IFE +  F +YGF +SHAA++A++ Y ++W+K H
Sbjct: 700  GGLEKYYDRIVLGMQERGYDQAFAEAIFEQIKGFGEYGFPESHAASFALLVYASSWLKCH 759

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRIY 836
             P  FLAA +  +        +  QDA++  + ++P  V     +  +          + 
Sbjct: 760  EPEAFLAAMLNSQPMGFYSPSQLVQDAQRHGVTVLPVDVTVSGWNSSLEPRAGAMRPAVR 819

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L+ ++G+    A  I  A A +PF S+ D   R      +R+ L +L  A AL     
Sbjct: 820  LGLSLLRGMKDGAAERIENARAVRPFASVNDLARRAQL---DRKDLHALADANALAALAG 876

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R + L    ++               +                 +    + +     + 
Sbjct: 877  NRREALWQ--SVVAVPDKDMLAAAATQD--------------ETPELGAPSEAHDIVADY 920

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            R LG   + HPL++ +P L    +           G   R   +V  +Q+  T KG  + 
Sbjct: 921  RSLGLTLNRHPLELLRPQLLANRLMPASTLRTYRHGRLARGCGLVTVRQRPGTAKG--VV 978

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +VT  +         +P
Sbjct: 979  FVTLEDETGNVNVIIWP 995


>gi|42519003|ref|NP_964933.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
 gi|41583290|gb|AAS08899.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
          Length = 1038

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/1028 (32%), Positives = 532/1028 (51%), Gaps = 45/1028 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQ  S ++LLE    + N+ +        AIA+TD N  +  ++F + A   GI+P++
Sbjct: 4    VSLQNLSGFTLLESPTKVKNLAENAKKKGYSAIALTDINITYGLVDFYKAAKDIGIKPLL 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVR 130
            G Q          +   G         ++++    +GY+ ++ L S + LL + G++ + 
Sbjct: 64   GMQ----------LRINGLIDGANKYDLIVIAKDDQGYRNILRLSSAVNLLTENGEKEIV 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR--LYVNLQR 188
            + L  L++     LI++T  +     +    N+ +V    L   + L      +Y+ +  
Sbjct: 114  LTLEDLKKYLG-HLILITPSNLHSELKMLQTNNPKVGANYLRKAQDLLPSSSSMYLGVYA 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
              G   Y    +  LA    LPL A  +  +L+  +      L A+  +T +   ++  +
Sbjct: 173  DSGQQEYIN-YIRSLATQFNLPLTAVEDGQYLNRNEQFLRRTLQAIKTNTHLENIEQLAK 231

Query: 248  VTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                HYLKN  E+  I+   D+ +AL+N  EI + C+  ++   P LP+F + +      
Sbjct: 232  QAGSHYLKNSEELQVIYRKFDIEDALKNAEEIGKICTAEIKFQDPQLPKFKQNKFP---- 287

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L + A  GL  R       K      YR+RLD+EL VI  M F  YFLIV D + 
Sbjct: 288  TSKEYLHSLAQTGLAKRFNNQIPTK------YRERLDYELQVINEMGFDDYFLIVWDVMN 341

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A   +I  GPGRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D+D   +
Sbjct: 342  FAHSVHITTGPGRGSAAGSLVSYALRITEVDPIEYNLLFERFLNPARQQMPDIDLDIPDN 401

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI+Y+  KYG    AQI+TFG+L AK  L+DV R   +   +  R    IP+    
Sbjct: 402  RRDEVIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHSKGK 461

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                +A       +     +     L   ++ LE L RH S HAAG+VI D  L+++V +
Sbjct: 462  ITLAEAYQKSKELQLLVNTNELSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVGL 521

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                   +PVTQ     +E  GL+K DFLGL+ LT+L   +  L   G+ ++ + IP DD
Sbjct: 522  QAGPL-GIPVTQQTKSNVESLGLLKIDFLGLRNLTILGNIVAALRADGININPNHIPLDD 580

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             ET  L     T  +FQ ES G+++ LE + PD  EDI+A+ +LYRPGPI+NI  + NRK
Sbjct: 581  QETLDLFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPINNIDHFINRK 640

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKE++    P +  +L  T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK  + +
Sbjct: 641  HGKERVQYPDPSLKKILGTTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNADVI 700

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             +++ +FI GA K G  K  A  +++ +A+FA+YGFN+SHA AY+ I++  A+ K HYP 
Sbjct: 701  QRERAKFIEGAIKLGRKKETAEKVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYPG 760

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  A +   M N  KI ++   A++  I+I+PP +     DF + + +I   L AI+G+
Sbjct: 761  AFYLALLNSNMGNRNKIAQYLMQAQEAGIKILPPDIENSKTDFSLENGKILVGLKAIRGL 820

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
             +   + I+E    +P  S+ DF  ++D+  L+   +E+L+ AG  D    +R +LL+  
Sbjct: 821  RSDLLKQILEI--KRPIKSMTDFLWKIDNNLLSADAVENLIKAGTFDRLAPNRNELLKIN 878

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             ++ +  +    N      ++F     T   K+  EK     ++ +   E   +GF    
Sbjct: 879  KDLVESVKMAGSN-----LSLF----ETLEPKVEEEKMP--TAAEKSAMEVEAMGFSTGI 927

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            +P+   +   RK   K  +   +  +G  +     ++  +   T+KG  + +  FS+ + 
Sbjct: 928  NPIIAVQKYARKFNAKRLQVFESNEQGIAV---GKLIKVKPITTKKGDNMAFAVFSDTSG 984

Query: 1026 EYEANFFP 1033
            E +   FP
Sbjct: 985  EKDFTIFP 992


>gi|296114706|ref|ZP_06833357.1| DNA polymerase III, alpha subunit [Gluconacetobacter hansenii ATCC
            23769]
 gi|295978740|gb|EFG85467.1| DNA polymerase III, alpha subunit [Gluconacetobacter hansenii ATCC
            23769]
          Length = 1057

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/1040 (26%), Positives = 460/1040 (44%), Gaps = 72/1040 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P +  LQ  + +S L GA S   +  +  A    A+ I D N+L   ++    A   G
Sbjct: 4    SAPRYAELQGTTYFSFLRGASSPIELFAQAKALGVEALGICDRNSLAGMVQAHVAAKEVG 63

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ ++GC                +      P +++       Y RL  L++       GK
Sbjct: 64   LRLVVGC----------------RLDLADFPPVLVYPMDRAAYGRLCRLLTIGKAR-AGK 106

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +    L   G   ++++   ++                  L   K  F DR ++ L
Sbjct: 107  GKCHLLWEDLVAWGEGQIVIMIPNTA-----------DDACGLHLRKLKDAFADRAFMAL 155

Query: 187  QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                R  D+ R  ++  LA+   +P V TN+ LF +       DV+  + H+T + +   
Sbjct: 156  TLLRRPNDQMRLYELANLAHQARVPTVVTNDVLFHTHNRRILQDVVTCIRHNTTIDEAGF 215

Query: 246  -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  D YLK   EM  +FS  PEA+  T++I  RC F L   A   P     E     
Sbjct: 216  VRERHADRYLKPPQEMARLFSRYPEAVARTMDIVERCRFSLDDLAYQYP----DEVSVPG 271

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +  +  L             +G         +  Q L+ ELN+I RM+++ YFL V   +
Sbjct: 272  QTPQQALETLTWEAAARTYPEGI------PDEVCQSLNHELNLIGRMQYAPYFLTVNSIV 325

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+  +I +  GRGS A S   Y L IT IDP R SLLFERF++ +R   PD D+DF  
Sbjct: 326  HYARSQDI-LCQGRGSAANSAVCYVLGITAIDPARNSLLFERFVSEERGEPPDIDVDFEH 384

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR++VI++V   YG +R A        +AK ALRDVG+ + +P   +  L   I +   
Sbjct: 385  ARREQVIQWVYEHYGRDRAALTAVVIRYRAKGALRDVGKVMGLPEDLIRTLSGQI-HGWG 443

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +   A+ D        L+D  +   L++++ L G  RH S H  G V+    L +LVP
Sbjct: 444  RKLDDDALNDTG----IDLSDRRIRLTLDLARCLIGAPRHLSQHPGGFVLTHDRLDELVP 499

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +         + +++   I+    +K D L L  LT ++K LD L +       L  IP 
Sbjct: 500  IEPASMEQRQIIEWDKDDIDVLKFMKVDILALGMLTCMKKGLDLLGEHKGQHFTLQSIPG 559

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y
Sbjct: 560  EDPRTYAMIRKADTIGVFQIESRAQMSMLPRLKPRVFYDLVIEVAIVRPGPIQGDMVHPY 619

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R+ G E+     P ++ +L +T G+ ++QEQ MQ+A + +G++ +EAD LRRAM   K
Sbjct: 620  LRRREGLEREDYPTPELEAVLSKTLGIPLFQEQAMQVAMICAGFTAAEADQLRRAMATFK 679

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                + + + R I G   NG  +  A  I++ L  F  YGF +SHAA++A+++Y ++WMK
Sbjct: 680  NTGTVSQFQTRLIEGMRANGYDEEFAERIYQQLEGFGSYGFPESHAASFAILAYSSSWMK 739

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------GDN 833
              +P  FLA+ +  +        +  +DAR+  ++I P  VN    D  +       G  
Sbjct: 740  CTHPDVFLASLLNSQPMGFYAPAQLVRDAREHGVEIRPVCVNASRWDSTLEGPESPNGLF 799

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +   ++ +KG+    A  I+ A A +PF S++D   R   K      L  L  A A   
Sbjct: 800  AVRLGMSLVKGLANDDAARIVAARASRPFTSVDDLWRRAGVKA---AALTHLAEADAFR- 855

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                      SL   ++ A W  K   ++   +FA  + T   +                
Sbjct: 856  ---------PSLGLARREALWAIKALRDEPLPLFAAAQVTREAEEPDVLLQPMRDGAEVV 906

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +   LG     HPL   +  L++ GI    +++    G  + +A +V+ +Q+  + +G 
Sbjct: 907  RDYNRLGLSLRDHPLAFLRKDLQEQGILPCRQALNAKDGKRLTVAGLVLVRQRPGSAEG- 965

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             + ++T  +         +P
Sbjct: 966  -VVFMTLEDETANMNVIIWP 984


>gi|87307671|ref|ZP_01089815.1| DNA polymerase III alpha subunit [Blastopirellula marina DSM 3645]
 gi|87289841|gb|EAQ81731.1| DNA polymerase III alpha subunit [Blastopirellula marina DSM 3645]
          Length = 1033

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/1033 (28%), Positives = 471/1033 (45%), Gaps = 69/1033 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   +  L   +++S LE A     ++ +       A+AITD ++L   +  +  A   G
Sbjct: 6    KKMRYAELYCRTNFSFLEAASHPEELVARAQELDYAALAITDFSSLAGVVRANTAAKECG 65

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +IG ++                       +VL      GY  L  L++      + +
Sbjct: 66   LKILIGVEITPTDG----------------WPVVLWAKNRAGYANLCRLIT----TGRRR 105

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                 C   + +I      +L G  S         NS Q + + +  ++++FG   Y+  
Sbjct: 106  APKGECQLTVADIAAHAAHLLCGVVSP-------ANSEQFSPQGVGRYREIFGAGGYLLA 158

Query: 187  QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD- 244
            Q  RG  D  R   +  L+    LPLVA    LF + +    HDVL A+ H T V+Q   
Sbjct: 159  QLQRGPHDHDRVDCLQTLSQQTRLPLVAAGGVLFHTPKRKPLHDVLTAIRHHTTVAQAGP 218

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              +   + +L+ R  +  +F+ LP A+E TVEIA +C+F L       P  +        
Sbjct: 219  YLQTNAERHLRERDVIARLFAGLPHAVERTVEIADQCTFSLDELRYEYPEELAPPGM--- 275

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  LR     G  +R       K       R+ L  EL +I  +++  YFL V D +
Sbjct: 276  -TPIEYLRQLTWQGAAMRYPGELPTK------IRELLQHELTLIEELRYEPYFLTVWDLV 328

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+  +I +  GRGS A S   Y L +T +DP R ++LFERF++ +R   PD D+DF  
Sbjct: 329  RFARTRDI-LCQGRGSAANSAVCYCLGVTAVDPGRVNVLFERFISRERDEAPDIDVDFEH 387

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EV++Y+  KYG ER        + + ++A+RDVG+AL +    VDRL K   +  A
Sbjct: 388  ERREEVLQYLYEKYGRERAGMTAVTITYRPRSAIRDVGKALGLSLDLVDRLAKNADHYRA 447

Query: 485  HPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
             P   Q      R REA L        + L + Q+L G  RH S H  G+VI   PL  L
Sbjct: 448  -PTDFQV-----RCREAGLDGRSSVGRQFLYLVQQLIGFPRHLSQHTGGMVITRGPLHDL 501

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601
            VP+         V ++N   ++  G++K D L L  LT ++K    + Q       L+ I
Sbjct: 502  VPIENAAMPGRTVVEWNKDDLDDLGILKVDCLALGMLTAIRKCFALIEQTTGQLHTLASI 561

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P  D + Y ++    T+G+FQ+ES      L  +QP C  D++  V++ RPGPI  D + 
Sbjct: 562  PEGDEQVYEMICQADTIGVFQIESRAQMSMLPRLQPRCYYDLVIEVAIVRPGPIQGDMVH 621

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R++G+E+    +  I  +L++T GV ++QEQ MQ+A + +G++  EAD LRRAMG 
Sbjct: 622  PYLRRRSGEEEATYPNDAIQGVLEKTLGVPLFQEQCMQLAIVAAGFTPGEADQLRRAMGA 681

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             +    +D+ + + + G  +NG+S   A  +F  +  F +YGF +SHAA++A++ Y +AW
Sbjct: 682  WRRPGVIDQFRIKLLEGMQRNGLSGDFAERVFLQIRGFGEYGFPESHAASFALLVYVSAW 741

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K HYP EF AA +  +        +  QDAR+ ++ I P  VN    D  +    +   
Sbjct: 742  LKCHYPAEFAAAIINSQPMGFYAPAQLIQDARKHDVAIRPIEVNNSDWDCTIETGALRLG 801

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L  I G+    A+ IM A  D  F SL DF  R    +     +  L  A AL     +R
Sbjct: 802  LRMIGGLQQAAAQAIMTARRDGRFHSLSDFAKRTALPQ---SQILPLAEADALSSMNPTR 858

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
               L ++  +         +   + + +F   +      + L     E        + R 
Sbjct: 859  RDALWNVLGV---------DAPTRQKTLFDDLEPDAEPPVWLPAMLPEEE---VHADYRT 906

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             G     HPL  ++  L  +G+       A      +++A +V+ +Q+  T KG  I +V
Sbjct: 907  TGLSLRAHPLSFHRERLTMLGVTSAAALAAIANNAAVKVAGIVLLRQRPSTAKG--ITFV 964

Query: 1019 TFSEPAKEYEANF 1031
            T  +         
Sbjct: 965  TLEDETGVANLVI 977


>gi|146306963|ref|YP_001187428.1| error-prone DNA polymerase [Pseudomonas mendocina ymp]
 gi|167016911|sp|A4XTN0|DNAE2_PSEMY RecName: Full=Error-prone DNA polymerase
 gi|145575164|gb|ABP84696.1| DNA polymerase III, alpha subunit [Pseudomonas mendocina ymp]
          Length = 1026

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/1040 (26%), Positives = 458/1040 (44%), Gaps = 85/1040 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  L   S++S   GA S   + ++ A     A+AITD   L   +   Q A   G+
Sbjct: 2    TPDYAELHCLSNFSFQRGASSARELFERAARLGYRALAITDECTLAGIVRAWQAARETGL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
              I+G ++                P    P +VLL     GYQ L  L++      + K 
Sbjct: 62   ALIVGSEM----------------PIEGGPKLVLLAEDLAGYQALCRLITVARRRAE-KG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+      +    GL+ +            +    Q ++      ++ F DRL++ ++
Sbjct: 105  RYRLLREDF-DTPLAGLLAI------------WLAEPQASDSEGAWLRQRFADRLWLGIE 151

Query: 188  RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
             HRG D   R  Q+  LA   ++P +A  +    +       D + A+     V++    
Sbjct: 152  LHRGADDAARLRQLQALAARLQIPALACGDVHMHARGRRALQDCMTAIRQHLPVAEAGAW 211

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +L+ R E+  ++    E L+ T+ +A RC F L       P  +     D   
Sbjct: 212  LFPNGERHLRRREELAELYPQ--ELLDETLRVAARCHFELDQLKYQYPHELVPAGHDAS- 268

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR++   GL  R   GA  K       R +++ EL +I  +K+  YFL V D + 
Sbjct: 269  ---SWLRHRVEEGLRWRWPDGASTK------VRTQVEHELQLITELKYESYFLTVHDIVS 319

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS--LLFERFLNPDRMSMPDFDIDFC 423
            WA+K +I +  GRGS A S   +AL IT+++P      LLFERFL+ +R   PD D+DF 
Sbjct: 320  WARKQHI-LCQGRGSAANSTVCFALGITELNPDNSGSRLLFERFLSRERNEPPDIDVDFE 378

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EVI+YV  +YG +R A      +     ALRDV +AL +P  QV  L        
Sbjct: 379  HERREEVIQYVFRRYGRQRAALTAVASTYHGAGALRDVAKALGLPPDQVGALADCCGRWS 438

Query: 484  AHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             H      + D  R REA      PS+ R+L ++ +L G  RH S H  G VI + PL  
Sbjct: 439  DH------MPDAERLREAGFDPDSPSLHRILTLAGELIGFPRHLSQHPGGFVISEHPLQT 492

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            LVP+     ++  V Q++   ++  GL+K D L L  L+ L++    + + RG +  L+ 
Sbjct: 493  LVPVENASMAERTVIQWDKDDLDLVGLLKVDILALGMLSALRRCFALIERYRGTRWTLAS 552

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 553  LPQEDAATYAMISRADTVGVFQIESRAQMAMLPRLRPKTFYDLVIQVAIVRPGPIQGDMV 612

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R+N +E +      + P+   T GV ++QEQVM++A + + YS  EAD LRR+M 
Sbjct: 613  HPYLRRRNDEEPVEYPSDELRPVFARTLGVPLFQEQVMELAMVAADYSPGEADELRRSMA 672

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K    ++  ++R  S   + G +      IF  +  F  YGF +SHAA++A+++Y + 
Sbjct: 673  AWKRHGGLEPHRQRLTSRMLEKGYTAEFTARIFRQIEGFGSYGFPESHAASFALLTYASC 732

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GD 832
            W+K H P  +  A +           +  QDAR+  I++ P  V     D  +       
Sbjct: 733  WLKCHEPAAYACALVNSWPMGFYSPDQVLQDARRHGIEVRPADVRHSAWDCSLEPSDGEQ 792

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              I   L  ++G     A  I       PF  ++D C R      + R  E L  AGAL 
Sbjct: 793  PAIRLGLRLLRGFREEDALRIEATRQAAPFTDVDDLCRRATL---DARARECLADAGALR 849

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                +R +   ++  +                 +FA    +  + + L + +V       
Sbjct: 850  GLAGNRYRARWAVAGV------------EPQLPLFAG-HSSREEPVALPRPTVGED---L 893

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +    G     HPL + +  LR    +   E      G  + +A +V+ +Q+ +T  G
Sbjct: 894  LTDYATFGTTLGPHPLALLRERLRAKRCRSSHELCTVEHGRPVSVAGLVIGRQRPQTASG 953

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
              + +VT  +         +
Sbjct: 954  --VIFVTLEDEFGMVNVVVW 971


>gi|296121580|ref|YP_003629358.1| DNA polymerase III, subunit alpha [Planctomyces limnophilus DSM 3776]
 gi|296013920|gb|ADG67159.1| DNA polymerase III, alpha subunit [Planctomyces limnophilus DSM 3776]
          Length = 1026

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/1035 (27%), Positives = 467/1035 (45%), Gaps = 79/1035 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L   +++S LE A   + ++ + A     A+A+TD N+L   +  +          
Sbjct: 2    SYAELHCLTNFSFLEAASHPDEMVARAAELGYSALAVTDINSLAGVVRANTATKDH---- 57

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
                         LK+    +        IV+ V    GY  L  L++        K   
Sbjct: 58   -----------PPLKLIVGSEIRPVDASPIVVWVKDRRGYANLCRLITTGRRR-APKGEC 105

Query: 130  RICLSWLQEIGTEGLIML----TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             + L  + +    GL+             I+ A+              ++ +FG+   + 
Sbjct: 106  HLTLDDIAQ-HAAGLLAGVVPPLHCEEFSINDAYL-------------YRDIFGEAFLLA 151

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                  +D YR   +  L+    LPLVA  N LF   +    HDVL A+   T V+Q   
Sbjct: 152  ELHRGPHDHYRRGWLQDLSRQTNLPLVAAGNVLFHVPDRKPLHDVLTAIRLGTTVAQVGE 211

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              +     +L+    + +I+ D+P ALE T+ IA +C+F L       P  +        
Sbjct: 212  ALQTNAQRHLRPLDSLKAIYGDIPGALERTLMIAEQCTFSLDELRYEYPEELAPPGF--- 268

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  L++    G E R   G   K       R  L+ ELN+I  +++  YFL V D +
Sbjct: 269  -SPIQYLQHLTWQGAEQRYPHGLPEK------IRHLLEHELNLIEELRYEPYFLTVWDIV 321

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+  +I +  GRGS A S   Y L IT +DP R  +LFERF++ +R   PD D+DF  
Sbjct: 322  RFARSRDI-LCQGRGSAANSAVCYCLGITAVDPERIDVLFERFISRERDEAPDIDVDFEH 380

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EV++Y+ NKYG ER        + + ++A+RDVG+AL      VDRL K   +  A
Sbjct: 381  ERREEVLQYLYNKYGRERAGIAAVTITYRPRSAIRDVGKALGFSLDLVDRLAKNADHYRA 440

Query: 485  HPVSLQAIADDSRFR--EARLADPSV--DRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                    +DD R R  EA L   S+   + + +  +L G  RH S H  G+VI   PL 
Sbjct: 441  --------SDDFRLRCQEAGLDIRSITGRQFVHLVGELLGFPRHLSQHVGGMVITRGPLH 492

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
            +LVP+         V Q+N   ++  G++K D L L  LT ++K    +       + L+
Sbjct: 493  ELVPIENAAMDGRTVVQWNKDDLDDLGILKVDCLALGMLTAIRKCFALVESTTGKTLTLA 552

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DN 657
             IP  D   Y ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI  D 
Sbjct: 553  SIPEGDERVYDMICRADTMGVFQIESRAQMSMLPRLKPRCYYDLVIEVAIVRPGPIQGDM 612

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +  Y  R+ G+E+    +  I  +LK+T GV ++QEQ MQ+A + +G++  EAD LRRAM
Sbjct: 613  VHPYLRRRFGEEEETYPNEAIRRVLKKTLGVPLFQEQCMQLAIVAAGFTPGEADQLRRAM 672

Query: 718  GK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            G  +    +D+ +++ + G  ++G+    A  +F+ +  F +YGF +SHAA++A++ Y +
Sbjct: 673  GAWRRPGVIDQFRQKLLDGMKQHGLEGEFAERVFQQIRGFGEYGFPESHAASFALLVYVS 732

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            AW+K H+P +F AA +  +        +  QD R+  I++ P  VN    D  +    + 
Sbjct: 733  AWLKYHFPAQFTAAVINSQPMGFYAPSQLVQDVRKHQIEVRPVDVNRSEWDCTLEQESLR 792

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
                 IKG+  + A  ++E+  D  F S+ DF  R    +     +E L  A AL     
Sbjct: 793  LGFCLIKGLQESAALTVVESRRDGSFTSMHDFVRRTSLPQ---AQVERLAEADALASLNQ 849

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R   + +          +  ++  +   +F   +     + TL   + E        + 
Sbjct: 850  TRRVAVWN---------ALSVSKKPRQRTLFDDLEPEEEPEATLPTMAPEEE---VHADY 897

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            R+ G     HPL  ++  L  +GI   E          +++A +V+ +Q+  T KG  I 
Sbjct: 898  RMTGLSLRSHPLAFHRERLETLGIIPAERLAQVPDDTLVKVAGIVLMRQRPSTAKG--IT 955

Query: 1017 WVTFSEPAKEYEANF 1031
            +VT  +         
Sbjct: 956  FVTIEDETGTANLVV 970


>gi|92119219|ref|YP_578948.1| DNA polymerase III, alpha subunit [Nitrobacter hamburgensis X14]
 gi|91802113|gb|ABE64488.1| error-prone DNA polymerase, DnaE-like protein [Nitrobacter
            hamburgensis X14]
          Length = 1087

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/1044 (27%), Positives = 469/1044 (44%), Gaps = 78/1044 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  +  LQV S +S L GA S   +    A+    A+AI D N+L   +   + A   G+
Sbjct: 2    TSRYAELQVTSHFSFLRGASSCEELFAHAASLGIEALAIVDHNSLAGIVRAHEAAKVTGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+GC                +       S+++  +    Y RL  L+S       GK 
Sbjct: 62   RLIVGC----------------RLDLADGMSVLVYPTDRPAYSRLCRLLSIGKTRG-GKA 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +    + +  +EGLI                       +R+   +  FGDR ++ L 
Sbjct: 105  KCILNWEDVVDW-SEGLIAALVPDVAD----------DACAQRIRRLRDTFGDRAHMALT 153

Query: 188  -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
             R R  D+ R  ++  +A    +  V TN+ LF         DV+  + H+  + +   R
Sbjct: 154  LRRRPNDQMRIHELNNMAQRFRVATVVTNDVLFHEPARRILQDVVTCIRHNVTIDEAGFR 213

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 D YLK   EM  +F+  PEAL  TV IA RC+F +   A   P    +E      
Sbjct: 214  RERHADRYLKPPDEMTRLFARYPEALARTVAIAGRCTFSMDELAYQYP----EERTMPGL 269

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L      G   R  +G         + R  L+ EL +I R++++ YFL V   ++
Sbjct: 270  TPQQALEKLTWEGAAERYPEGL------PDEVRPTLEHELRLIERLQYAPYFLTVNSIVR 323

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S   Y L IT IDP R  LLFERF++ +R   PD D+DF  +
Sbjct: 324  FARSRDI-LCQGRGSAANSAVCYVLGITSIDPERNDLLFERFVSEERREPPDIDVDFEHE 382

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+ V+++V   YG    A   T    +AK ALRDVG+AL +    +  L   I      
Sbjct: 383  RREIVMQWVFETYGRNHAALCSTVIRYRAKGALRDVGKALGLTEDLIKLLSSQIWGWSEE 442

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             V  +   +        L D  +   + ++++L G  RH S H  G V+    L +LVP+
Sbjct: 443  GVEPKHAEE----LNLNLDDRRLKLAIVLARELIGTPRHLSQHPGGFVLTHDRLDELVPI 498

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
                  +  V +++   I+    +K D L L  LT ++++ +FLA+ +G ++DL+ IP +
Sbjct: 499  EPAAMPNRQVIEWDKDDIDALKFMKVDCLALGMLTCMKRAFNFLAEAKGTELDLATIPSE 558

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D  TY ++    TLG FQ+ES      L  M+P    D++  V++ RPGPI  D +  Y 
Sbjct: 559  DPRTYAMIRKADTLGTFQIESRAQMAMLPRMKPRTFYDLVIEVAIVRPGPIQGDMVHPYL 618

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+ GKE +V   P ++ +L +T GV ++QEQ M++A   +G++  EAD LRRAM   K 
Sbjct: 619  RRREGKEPVVFPKPELEKVLGKTLGVPLFQEQAMRVAIECAGFTPGEADQLRRAMATFKF 678

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               + K K++ I+G    G  +  A   F  L  F  YGF +SHAA++A+I+Y ++WMK 
Sbjct: 679  TGGVSKFKDKLINGMVDRGYDREFAEKTFSQLEGFGSYGFPESHAASFALIAYASSWMKC 738

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRIY 836
             +P  F AA +  +        +  +DAR   +++ P  +N    D  +         + 
Sbjct: 739  WHPDVFCAALLNAQPMGFYAPAQIVRDARDHGVEVRPVCINASRWDCTLEPINDDGFAVR 798

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
                 I+G+       I+ A AD+PF+S++D   R D    +   L  L  A A++    
Sbjct: 799  LGFRLIRGLSNKNGAEIVAARADQPFESVDDLWRRADIPVAS---LVQLAKADAMN---- 851

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE--- 953
                  +SL   ++ A W  K   ++   +FA    T  +  T+E+      S+R     
Sbjct: 852  ------ESLGLARREALWALKALRDEPLELFA--AATQREARTIEEVREPAVSLRLMTSG 903

Query: 954  ----NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 + R +G     HP    +  L    I    +++    G  +  A +V+ +Q+  +
Sbjct: 904  GEVVEDYRHVGLTLRQHPASFLRADLSSRRIVTCADAMNACDGKWLTTAGLVLVRQKPGS 963

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
             KG  + ++T  +         +P
Sbjct: 964  AKG--VMFITIEDETGVANLVIWP 985


>gi|134093911|ref|YP_001098986.1| putative DNA polymerase III subunit alpha [Herminiimonas
            arsenicoxydans]
 gi|133737814|emb|CAL60859.1| Error-prone DNA polymerase [Herminiimonas arsenicoxydans]
          Length = 1045

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/1041 (27%), Positives = 479/1041 (46%), Gaps = 71/1041 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S+++ L+GA     ++ +       ++AITD  +L   +    +A    + 
Sbjct: 6    PAYAELHCRSNFTFLQGASHPEELVQRACDLGYDSLAITDECSLAGVVRAYVEAKKHNLH 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQ 127
             IIG  + +                     +V L +   GY  L EL++      D+G  
Sbjct: 66   LIIGSDITLSCGTR----------------LVFLATNRNGYGNLSELITLGRRRADKGFY 109

Query: 128  SVR---ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            ++    +     QE  +  L  L    +  I +     S +   ++     + F  R +V
Sbjct: 110  TLHRSDLDPDERQEPNSIHLAQLPDCLAILIPKCCC--SREEIARQAAWLARTFVGRAWV 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
              +  H   D Y    +  +A   +LPLVAT + L          D L AV     V++ 
Sbjct: 168  AAELLHWSDDEYWLDLLTGIAAEMDLPLVATGDVLMHVRSRKPLQDTLTAVRLGKSVAEC 227

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                +   + +L++R  +  ++S  PE L+ T+ +A+ C+F L       P  I    + 
Sbjct: 228  GMDLQPNAEQHLRSRLRLAQLYS--PELLQETLTLAKLCTFSLDELRYQYPEEIVPAGET 285

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +     + LR     G   R       +     + RQ+++ EL +I  + +  +FL V D
Sbjct: 286  LS----SYLRRLTYEGATQRRF-----RQGIPANIRQQIEHELVLITELNYEPFFLTVYD 336

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+   I +  GRGS A SV  Y L IT++DP R S+LFERF++ +R   PD D+DF
Sbjct: 337  IVKFARSKGI-LCQGRGSAANSVVCYCLGITEVDPARSSVLFERFISRERNEPPDIDVDF 395

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI+Y+ NKYG  R A      + + ++A++DVG+AL + + QV+RL +     
Sbjct: 396  EHQRREEVIQYIYNKYGRHRAALTAALITYRPRSAMKDVGKALGLDFEQVNRLSQSHKWW 455

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +S + + +     +A    P V +L+E+++ L G  RH S H  G VI    L++L
Sbjct: 456  DGREISDERLQEGGFDPQA----PIVQKLVELTKTLIGFPRHLSQHTGGFVIARDSLARL 511

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLI 601
            VP+      D  V +++   ++  GL+K D L L  L+ +Q++L+ +  +RG  V++  I
Sbjct: 512  VPIENASMKDRSVIEWDKDDLDALGLLKVDVLALGMLSAIQRALEMISTRRGRMVEMQDI 571

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV-- 659
            P +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +  
Sbjct: 572  PSEDPLTYEMISAADTIGVFQIESRAQMSMLPRLRPQKYYDLVVQVAIVRPGPIQGGMVH 631

Query: 660  VYNNRKN-GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             Y  +++   + IV   P I   L  T GV I+QEQVMQIA L +GY+  EAD LRR+M 
Sbjct: 632  PYLKQRHMHPDDIVYPGPEIKEALSRTFGVPIFQEQVMQIAVLAAGYTPGEADELRRSMA 691

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K K  ++K  ++   G +KNG     A  +FE +  F +YGF +SHAA++A++ Y +A
Sbjct: 692  AWKRKGNLEKHGDKLKKGLAKNGYDPEFANRLFEQIKGFGEYGFPESHAASFALLVYVSA 751

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K H P  FLAA +  +        +  QDA++  + + P  V    ++  + D    Y
Sbjct: 752  WIKRHEPAAFLAALLNSQPMGFYSASQLVQDAKRHGVPVRPIDVLISELESTMEDIHERY 811

Query: 838  -----SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
                  L  +KG+    A+ I+EA A + F  ++D   R +  +            GAL 
Sbjct: 812  PAVRLGLHMVKGLSLDGAKRIIEARAHQSFKDVDDLARRAELDQH---------ELGAL- 861

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                +R   L  L   ++ A+W      +    +   +     + + L   S     V  
Sbjct: 862  ----ARANALLPLSGHRRQAKWEVAAMMSAPMLL--RDAPIREEPLLLPAASEGQEIV-- 913

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +    G   + HPL + +P L+KM +    E          R   +V  +Q+  T KG
Sbjct: 914  -ADYASTGLTLNRHPLALLRPRLKKMNLSTALEMKGFADRKIARTTGIVTMRQRPPTAKG 972

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
            +   +VT  +         +P
Sbjct: 973  TM--FVTLEDETGITNVIIWP 991


>gi|157804147|ref|YP_001492696.1| DNA polymerase III subunit alpha [Rickettsia canadensis str. McKiel]
 gi|157785410|gb|ABV73911.1| DNA polymerase III subunit alpha [Rickettsia canadensis str. McKiel]
          Length = 1200

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1104 (35%), Positives = 597/1104 (54%), Gaps = 105/1104 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  I++  + ++  AI + D+ NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKIVELASLNKMSAICLADSGNLFGSLEFALYAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I    N+               I+L+     GY+ L++L S     +  K  
Sbjct: 63   PIHGVILNIQYDINI------------FAQILLIAKDEVGYKNLLKLSSLTVTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L +   EGLI L   + G + +     + + A       +++  DR Y  + R
Sbjct: 111  DHINFEDLVKY-QEGLIALCCYTDGIVGKCLLARNEEQAILFARKLQEILADRFYFEIMR 169

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +++ E   +++A    +PLVATN  LF  +  + AHDVL+ ++        DR  
Sbjct: 170  HDLPEEQFIEDHYIKIAAELAIPLVATNKVLFSEKSMHYAHDVLLCISAGVTKEYPDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y K+  EM+ +FSDLP A+ENTV +  RC F    + P+LP F  K+       E
Sbjct: 230  VSENCYFKSPREMIELFSDLPAAIENTVNLRERCYFAAHANPPMLPNFATKDI-----SE 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
             + +R +A  GL  RLA    ++    +       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIRKEATEGLLARLAIKFKSENISLENQEELKTEYLSRLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+K+  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKQEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D + +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGYNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYITELVP 464

Query: 481  NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PV+L QA+ +      A   +           +  +L+ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVTLEQAMHEVPELANAAKGNGLYNLEGEAELIKLVLDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ +  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDANSDMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            +RG+ VDL+ + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  ERGIDVDLNNMTFDDNKTYQMLCQGKGVGVFQFESVGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF----------ADYG 760
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS + A +IF  +AKF          A YG
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAVANNISASQAKSIFATVAKFAGYGFNKAHAAAYG 764

Query: 761  FNKSHAAAYAVISYQTAWMKT-------HY------------------------------ 783
               S+  AY   +Y   ++         ++                              
Sbjct: 765  VI-SYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDSGIKIIAPNINISEGYFI 823

Query: 784  ----------PVEFLAASMTLEMDNVEKIKKFCQD--ARQFNIQIMPPSVNTPCVDFKVG 831
                               T    + EKI +   D   R  + +     + +   D +V 
Sbjct: 824  VKSVIPQAVTCHSHEVLCHTRVGVDPEKISEMKMDDYFRGNDKEGTENDIKSCEYDKEVS 883

Query: 832  DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I ++L AIKGV     + +  E  A  PF S+ DF  R+  K +N ++LE+L+ +G 
Sbjct: 884  --AIIFALGAIKGVTPNFGKLVTDERKARGPFKSITDFIERLPPKSINSKLLENLIKSGC 941

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R+QL  S+  +  YA    K + +   ++   +  + S  I ++    + +++
Sbjct: 942  FDELHDNRLQLFLSIPKLLSYATSYHKEQASNQFSL--IKVSSLSPTILIDSNYADKNTL 999

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKK 1008
             F  E   +G + S HPL  Y+ I  ++ I    +    +      + LA ++  K  + 
Sbjct: 1000 AF-YEFEAMGLFISNHPLTQYQEIFSRLNILNTADLHNKLPYGTTRVNLAGVIQKKDSRM 1058

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            + +G R   +  S+P   +E + F
Sbjct: 1059 SVRG-RFVTLVLSDPENIFELSIF 1081


>gi|300214577|gb|ADJ78993.1| DNA polymerase III alpha subunit [Lactobacillus salivarius CECT 5713]
          Length = 1097

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/1028 (30%), Positives = 511/1028 (49%), Gaps = 53/1028 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV SSYSLL+  L +   +         A+ +TD N+++  L+F  +   AGI+PI
Sbjct: 2    YAPLQVLSSYSLLQSPLRIPEYVKLGKELGYNALVLTDINSMYGVLDFYHECVKAGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L     +                  + +   + GYQ L+ + S+            
Sbjct: 62   IGITLQSGDDE-----------------YIFIAKNSNGYQNLMNISSKRLTAVDENYKNI 104

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG--DRLYVNLQR 188
              L+ + E   + +++L         +  +   + +   ++   + L    +  Y  +  
Sbjct: 105  FKLADITEYLQDVIVIL---------KPSYLTVNDIISDQVTELQTLVSAAETTYYGV-- 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                DR   +  +  A   +L  +      +L E DY +  VL A+     V+  +    
Sbjct: 154  -NPNDRDAINNDLMAAEKLQLETILLTPVKYLKERDYFSTKVLQAIGTGENVN-PNWNFK 211

Query: 249  TPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               +YL    E   +    L  A +N + +  +C+  L      LP F E          
Sbjct: 212  NDGNYLHTPEEYERLGTDYLSSAYQNAINVIAQCNLTLNFPKTQLPHFKETNG----LSS 267

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E  LR     GL  R+A+  I    + ++Y+ RLD+EL+VI RM F  YFLIV D   +A
Sbjct: 268  EGFLRKLCQEGLAKRIAEENIK---NQEEYQNRLDYELSVIHRMGFDDYFLIVWDVTNFA 324

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +NNI  GPGRGS AGS+ +Y L ITDIDP+++ L+FERFLN +R  MPD D+D    +R
Sbjct: 325  HENNILTGPGRGSAAGSLVSYTLYITDIDPIKYDLIFERFLNEERAQMPDIDLDIPDIKR 384

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D +I Y+  KYG + +AQIITFG+L+ K  LRDV R   +   + D   K IP +    +
Sbjct: 385  DTIIEYLHQKYGQQHMAQIITFGTLKTKQVLRDVARVFDLKTYEADAWSKAIPKEYGITL 444

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A A     +     +     L E +  LEGL RH STHAAGI++ D  L   VP+  
Sbjct: 445  K-EAYASSQSLKNLVADNSKNRLLFETAIALEGLPRHYSTHAAGIILSDDDLIDHVPVQI 503

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                 + ++QF    +E+ GL+K DFLGL+ L++L+ ++  + +   V  D+  I  DD 
Sbjct: 504  G-GDGILMSQFAKNQVEEVGLLKMDFLGLRNLSILENTITLIKKGYHVDFDIRKINLDDP 562

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ET  +     T G+FQ ES+G+R  L  ++P   ED+ A+ +LYRPGPI NI  +  RK+
Sbjct: 563  ETLKIYQNAETSGVFQFESAGIRGVLTKLKPTSFEDVAAVNALYRPGPIQNIDEFIARKH 622

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+  I      ++ +LK+T G+++YQEQVMQ+A  + G++L +AD LRRAM KK  + + 
Sbjct: 623  GERPITYPSKELEGILKQTYGIMVYQEQVMQVASTMGGFTLGQADSLRRAMSKKKHDIIS 682

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + +  FI+GA K G +  +A  ++  + +F DYGFN+SHA AY+ +S++ A++K HYP  
Sbjct: 683  RMEVMFINGAMKKGYTHEVAKKVYAYIMEFGDYGFNRSHAVAYSKMSFELAYIKAHYPAA 742

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F AA +   + N  K K +  +A+   +++  P +N     + + +  IY+ L+ IK + 
Sbjct: 743  FFAALLNSVIGNPRKTKDYVLEAKNKGVRVHHPDINISQSLYILRNGEIYFGLSCIKSLR 802

Query: 847  TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                + I++    +  F ++EDF  R+D + L R ++E L+++G  D FG SR +L   L
Sbjct: 803  KNFLQDILQERKRNGIFKNMEDFLQRIDKRYLKRELIEILIYSGVFDTFGQSRRELFAML 862

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              +    +    N       +F+        K T+EK  + N     E E   LG Y SG
Sbjct: 863  PRLLSNIELSGNN-----VELFSMLAPK---KTTVEKIEISND-ELLEKENYYLGAYLSG 913

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP++ Y  ++         +   + +   + +   +   +  +T+ GS++ +VT ++   
Sbjct: 914  HPVEKYTELIYLTNSTRVSQINESNKDKYVSMILQIKVIKIIRTKNGSQMAFVTAADQTG 973

Query: 1026 EYEANFFP 1033
              +  FFP
Sbjct: 974  NMDLTFFP 981


>gi|154252973|ref|YP_001413797.1| DNA polymerase III subunit alpha [Parvibaculum lavamentivorans DS-1]
 gi|154156923|gb|ABS64140.1| DNA polymerase III, alpha subunit [Parvibaculum lavamentivorans DS-1]
          Length = 1085

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1040 (26%), Positives = 462/1040 (44%), Gaps = 66/1040 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SF  L V +++S L GA     ++    A    AI I D N L   +     A    I
Sbjct: 2    SASFAELAVATNFSFLRGASHAEELVLAAKAQGLSAIGIADRNTLAGIVRAHAAAKEEKI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + ++G                 +        ++        Y RL  L++        K 
Sbjct: 62   RLLVGA----------------RLVLQDGFEVIAYPQDRAAYGRLTRLLTLGNRR-APKG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               + +S L E G     +       P+         +  E +L    + F D +++ L 
Sbjct: 105  ECFLAMSDLLEHGEGHCFI---AMPPPVP-------DEDFEAKLRLIAETFPDSIWLGLT 154

Query: 188  RHRGYDRYRESQVVQL-AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
                 D  R   V++L A   ++PLVATN+ L+ S +    HDV+  V     + +   R
Sbjct: 155  PFYRADDVRRHHVLELLARKTQVPLVATNDVLYHSPDRKPLHDVVTCVREHCTLKEAGFR 214

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + ++K+  EM  + + +P+AL  T +I  RCSF L+      P     +     +
Sbjct: 215  LAANAERHVKSPEEMSRLLAHVPKALSATFDIVERCSFSLEELRYEYP----ADNFSEHE 270

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L      G     +QG   K       R+ +D EL +I  M ++ YFL V D ++
Sbjct: 271  TPQELLVRLTWEGARDFFSQGVDDK------IRKAIDHELKLIEEMAYAPYFLTVHDIVR 324

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  NI +  GRGS A S   + L IT ++P    LLFERF++ DR   PD D+DF  +
Sbjct: 325  YARSQNI-LCQGRGSAANSTVCFCLGITSVNPSEIDLLFERFISKDRNEPPDIDVDFEHE 383

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG  R     T  S ++++A+RDVG+   +    +  L +      + 
Sbjct: 384  RREEVIQYIYEKYGRHRAGIAATVISYRSRSAIRDVGKVFGLSEDVISALSRSTWGWSSS 443

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             VS +    D+R      +D  +   L+++ +L G  RH S H  G VI   PL ++VP+
Sbjct: 444  GVSQK----DAREIGLDPSDRRLRLALKLAGELIGFPRHLSQHVGGFVITKGPLDEVVPI 499

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                  D    +++   ++  G++K D L L  LT ++K+ +F+ +     + L+ +P  
Sbjct: 500  QNAAMDDRTFVEWDKDDLDTLGILKIDVLALGMLTCIRKAFEFIEKHYARPMTLAGVPQG 559

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D   Y +L     +G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y 
Sbjct: 560  DKAVYDMLCEADAIGVFQVESRAQMSMLPRLKPRNFYDLVVEVAIVRPGPIQGDMVHPYL 619

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R++GKE+I     +++ +L+ T GV ++QEQ M+IA + +G++  E+D LRRAM   + 
Sbjct: 620  RRRSGKEEITYPSSVLEEVLERTYGVPLFQEQAMKIAIVAAGFTPGESDQLRRAMATFRK 679

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               +   +++FI+G  KNG  +  A   F+ +  FADYGF +SHAA++A ++Y +AW+K 
Sbjct: 680  SGTIGMYRDKFIAGMLKNGYKQDFAERCFKQIEGFADYGFPESHAASFARLAYISAWLKY 739

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIY 836
            HYP  F AA +  +        +  +DA +  +++ P  VN    D  +     G   + 
Sbjct: 740  HYPDAFCAALLNSQPMGFYAPAQLVRDASEHGVEVRPVDVNHSDWDCTLEKTTGGKCAVR 799

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  +KGV   T   I        FDS+     +     L  RV+E L  A A    G+
Sbjct: 800  LGLRQVKGVQIATGETIEGKRGKG-FDSIRHLWLKT---GLGPRVIEKLADADAFRSIGF 855

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT---FSDKITLEKFSVENSSVRFE 953
             R + L ++  +  Y    +   T     +FA  +       + ++L         V   
Sbjct: 856  DRREALWAVRGLGGYGNG-QNGTTPAALPLFATLEEGGLQVEEDVSLPAMPPGEHVVL-- 912

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +  +L      HP+   +P     G     +   T  G  I +A +V+ +Q+  T  G 
Sbjct: 913  -DYAMLRLSLKAHPISFLRPRFAACGAISSRQLKETEAGKRISIAGLVLVRQRPGTASG- 970

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             + + T  +         +P
Sbjct: 971  -VIFATLEDETGIANIIIWP 989


>gi|116515088|ref|YP_802717.1| DNA polymerase III, a subunit [Buchnera aphidicola str. Cc (Cinara
            cedri)]
 gi|116256942|gb|ABJ90624.1| DNA polymerase III, a subunit [Buchnera aphidicola str. Cc (Cinara
            cedri)]
          Length = 1172

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1053 (36%), Positives = 590/1053 (56%), Gaps = 48/1053 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVH+++HS YS+++G +    +++         + ITD +NL   ++F   AC  GI+P
Sbjct: 5    DFVHIRIHSDYSMIDGIIKPKKLVEYAKLMNMKVLGITDISNLHGVIKFYSSACKLGIKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ-GKQS 128
            II           + +    K       ++ LL     GY  +I+L+S  Y         
Sbjct: 65   II----------GVDIIVSSKFEQNVFSNLTLLARNNIGYNNIIKLLSESYQSGYDNNIG 114

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            + I +  L +   +GL++L+GG  G I +  F N  ++  K LL +KK F ++ Y+ + R
Sbjct: 115  LVIKIDDLLKY-RKGLLVLSGGIKGNIGKCIFNNKKKLLYKYLLFYKKYFLNKFYLEISR 173

Query: 189  HRGYDRYRESQVVQL-AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
                        ++  +Y   LP+VATN  LFL ++D++ H + +A+     +S  +   
Sbjct: 174  LGYEKEEEYIIYIKYISYKFSLPIVATNEVLFLKKKDFQVHKIKVAIYKKKTISDSNFVY 233

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + T + +L+   EM+ IF D PEA+ N+ EI++RC+ I+   +  LP F     +     
Sbjct: 234  KYTENQFLRKNDEMIKIFHDCPEAIINSFEISKRCNVIIPSGSYFLPLFPTGSIN----- 288

Query: 307  EENELRNKAVAGLEVRLAQGAI---AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              +    K+  GL+ RL    +    +      Y  RL++EL +I +M F  YFLIV +F
Sbjct: 289  LYDFFVKKSKEGLKKRLKTIYLNKNKREKKKDIYFSRLEYELLIIKKMGFISYFLIVMEF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAKKNNIPVGPGRGSG+GS+ ++AL IT+IDPL+F+LLFERFLNP+R+S+PDFDIDFC
Sbjct: 349  IQWAKKNNIPVGPGRGSGSGSLVSFALNITEIDPLKFNLLFERFLNPNRISLPDFDIDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V  KYG   VAQIITFG++ AKA +RDVGR L  PY  ++++ KLIP D 
Sbjct: 409  MNKRDLVIDHVSKKYGRNSVAQIITFGTMAAKAVVRDVGRVLGYPYGLINKISKLIPLDS 468

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A +      +    +  + +L+ IS+KLEG+ ++   HA G+VI    +S  +
Sbjct: 469  NMNLK-KAFSIKKELIDLYHHNNDIKKLINISKKLEGVIKNIGKHAGGVVISPTKISDFI 527

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD---LSL 600
            P+  D   +  VTQF+   +E  GL+KFDFLGLKTLT++   +  + ++        L+ 
Sbjct: 528  PIICDHLGNNQVTQFDKNDVEFVGLVKFDFLGLKTLTMIDMIIKRINKKDKIKKKFFLNK 587

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV- 659
            I   + +++ LL    T  +FQLES GMR  ++ ++PD  EDI++LV+LYRPGP+ + + 
Sbjct: 588  ISLKNKKSFLLLKKSETTSVFQLESIGMRNLIKRLKPDSFEDIVSLVALYRPGPLQSGMV 647

Query: 660  -VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              + NRK+GKEKI        H  + P+LK T G+I+YQEQVMQIAQ+LS ++ SEAD+L
Sbjct: 648  DNFINRKHGKEKISYPDSKWQHKWLKPILKSTYGIILYQEQVMQIAQILSNFTPSEADIL 707

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAM KK  +EM +QK+ F SGA +N I   ++  IF LL KF+ YGFNKSH+  YA+++
Sbjct: 708  RRAMAKKNPKEMMRQKKLFQSGAKENLIDVNLSKKIFYLLEKFSSYGFNKSHSVTYALLA 767

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-D 832
            YQT W+K +YP EF+ ++MTL+M N  KI     DAR+  ++I+PP+VN     F +   
Sbjct: 768  YQTLWLKANYPSEFMVSAMTLDMTNTNKIVNLIYDARRMKLKIIPPNVNISNYSFSINKY 827

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS--ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
              I Y L AIKG+G ++   I+E     +  F S  DFC  +  KK+ R V E L+ +GA
Sbjct: 828  GDIIYGLGAIKGLGKSSIDIIIEERKKKNNAFFSFLDFCVCLLLKKITRHVFEILIMSGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS-- 948
             DCF   R++L   ++ + K A+    N     +N   +    F  KI+++ +  E +  
Sbjct: 888  CDCFNICRVELFNKIEYLLKLAKQKISN-IQLQQNNLFNFNNDFFQKISIKNYKKEKNFY 946

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVYKPILRKMG-IKGYEESVATIRGNNIRLAA 999
                      + + E+ +LG Y S HP+  +   +          + +   +  N+ L+ 
Sbjct: 947  NFELYNIFLKKLQWEKEILGLYLSNHPIKNFLNEINYYTKGMKLNDYLLDNKKKNVILSG 1006

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            M+ S +   T+K  +   +T  +     +  +F
Sbjct: 1007 MIFSIKTMFTKKKKKFYIITLDDSYSRLDVLYF 1039


>gi|66045759|ref|YP_235600.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae B728a]
 gi|75502059|sp|Q4ZTG0|DNAE2_PSEU2 RecName: Full=Error-prone DNA polymerase
 gi|63256466|gb|AAY37562.1| DNA polymerase III alpha subunit [Pseudomonas syringae pv. syringae
            B728a]
          Length = 1031

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/1039 (26%), Positives = 466/1039 (44%), Gaps = 84/1039 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + ++       A+AITD   L   +   Q + + G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFERALRHGYKALAITDECTLAGIVRAWQASKSTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ I+                  P +VLLV    GY+ L +L++       GK   R
Sbjct: 65   VGSEMHIENG----------------PKVVLLVENQAGYEALCKLITVARRR-AGKGEYR 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +      E   +GL+ L               ++Q         ++ F +RL++ +  HR
Sbjct: 108  VLREDF-EPAPDGLLAL--------WLPDLDGNAQACLAGGRWLRERFAERLWLGVGLHR 158

Query: 191  GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
            G D   R + ++ LA +  +P VA+ +    +       D + A+ H T V++       
Sbjct: 159  GPDDEQRLADLLALAQSLGVPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEAGHLLFA 218

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + +L+    +   + D    L  +V IARRC+F L       P  +  +     +   
Sbjct: 219  NGERHLRPLDALSEHYPDW--LLAESVRIARRCTFDLGDLKYEYPHELVPKG----QTST 272

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR     G+  R   G           R +++ EL +IA  KF  YFL V D +++A+
Sbjct: 273  SWLRELTERGVRRRWPGGLTPAT------RAQVEKELALIAEKKFDSYFLTVHDIVEFAR 326

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  DRR+
Sbjct: 327  SQHI-LCQGRGSAANSAVCYALGITELNPEQSNLLFERFISRERNEPPDIDVDFEHDRRE 385

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L +           
Sbjct: 386  EVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPEQINALAEAFSRWS----- 440

Query: 489  LQAIADDSRFREARLAD--PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              ++    R RE       P + R+L ++ +L G  RH S H  G VI + PL  LVP+ 
Sbjct: 441  -DSLPSPERLREYGFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLVPVE 499

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P DD
Sbjct: 500  NAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGQRWTLATLPGDD 559

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
             +TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  Y  
Sbjct: 560  RKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLR 619

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+NG+E +    P ++ + K T GV ++QEQVM++A L + Y+  EAD LRRAM   K  
Sbjct: 620  RRNGEEDVTYP-PKLESVFKRTLGVPLFQEQVMEVAILAADYTPGEADELRRAMAAWKRH 678

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              ++  +ER  +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W+K H
Sbjct: 679  GGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCH 738

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD---------N 833
             P  F  A +           +  QDAR+ +I+I P  V     D  +            
Sbjct: 739  EPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDRTRNL 798

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I   L  ++      A  I  A A +PF    D   R +    + R  E+L  +GAL  
Sbjct: 799  AIRLGLRMVRSFREEDALRIEVARAKRPFVDATDLTLRAEL---DARAAEALADSGALRG 855

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R +    +  +                 +F  +  +   ++TL   +V   +    
Sbjct: 856  LIGHRHRARWEVAGV------------EAQRPLF-DDLPSEETQVTLPLPTV---AEDLV 899

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +   LG     HPL + +  L     +  ++ +       + +A +V+ +Q+  T  G 
Sbjct: 900  ADYTTLGTTLGPHPLALLRRQLAAKRFRSSQDLLHLENDRTLSVAGLVIGRQRPGTASG- 958

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + +VT  +         +
Sbjct: 959  -VTFVTLEDEFGMVNVVVW 976


>gi|152986891|ref|YP_001350182.1| error-prone DNA polymerase [Pseudomonas aeruginosa PA7]
 gi|167016910|sp|A6VAU7|DNAE2_PSEA7 RecName: Full=Error-prone DNA polymerase
 gi|150962049|gb|ABR84074.1| probable DNA polymerase alpha chain [Pseudomonas aeruginosa PA7]
          Length = 1024

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/1036 (27%), Positives = 465/1036 (44%), Gaps = 82/1036 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q A    ++ 
Sbjct: 3    AYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQAAREYRVKL 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G                 +      P +VLL     GYQ+L  L++R       K S 
Sbjct: 63   LVGS----------------EIRLEQGPKLVLLAEDLAGYQQLCRLITRGRRRAD-KGSY 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    LQ    +G++ +     G  D                   + F  RL++ ++ H
Sbjct: 106  RLLREDLQ-PALDGVLAIWLAEPGDDD-------------DAAWLGECFPQRLWLGVELH 151

Query: 190  RG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
            RG  D  R   ++ LA   +LP VA  +            D + A+ +   VS+      
Sbjct: 152  RGADDDARLRGLLALAARAQLPAVACGDVHMHCRGRRALQDCMTAIRNHLPVSEAGAHLF 211

Query: 248  VTPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L+  + +  I+   PEAL   T+ IA RC F L+      PR +     D    
Sbjct: 212  ANGERHLRPLAALQGIY---PEALLAETLRIAERCRFDLEQLKYQYPRELVPAGHD---- 264

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     G+  R   GA AK       R++++ EL +I+ + +  YFL V D + +
Sbjct: 265  PASWLRRLTEKGIRRRWPDGASAK------VREQIEKELKLISELGYESYFLTVQDIVGF 318

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I +  GRGS A S   +AL IT++DP R +LLFERFL+ +R   PD D+DF  +R
Sbjct: 319  ARRQKI-LCQGRGSAANSAVCFALGITELDPERINLLFERFLSRERNEPPDIDVDFEHER 377

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+YV N+YG +R A      +     A+RDV +AL +P  QVD L           
Sbjct: 378  REEVIQYVFNRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPDQVDALANCCGRWSDRA 437

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             S + + +             + R+L ++ +L G  RH S H  G VI ++PL  LVP+ 
Sbjct: 438  PSAERLME----AGFDPQSAVLRRVLALTGELVGFPRHLSQHPGGFVISEQPLDTLVPVE 493

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--VKVDLSLIPFD 604
                 +  V Q++   ++  GL+K D L L  L+ L++S D L +     ++ L+ IP +
Sbjct: 494  NASMVERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLLHELRGGERLSLASIPSE 553

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D  TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  Y 
Sbjct: 554  DPATYAMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIQVAIVRPGPIQGDMVHPYL 613

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+NG+E +      ++ + + T GV ++QEQVM++A + + YS  EAD LRR+M   K 
Sbjct: 614  RRRNGEEPVAYPSVELEKVFERTLGVPLFQEQVMELAIVAADYSPGEADELRRSMAAWKR 673

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               ++  +ER   G   NG     A  IFE +  F  YGF +SHAA++A+++Y ++W+K 
Sbjct: 674  HGGLEHHRERLTRGMLANGYEADFAARIFEQIKGFGSYGFPESHAASFALLTYASSWLKR 733

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIY 836
            H P  F  A +           +  QDAR+  IQ  P  V     D  +         I 
Sbjct: 734  HEPAAFACALINSWPMGFYSPDQLLQDARRHAIQTRPVDVRHSRWDCSLEPIGQEQPAIR 793

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  I+G     AR I +A   + F  + D   R     L+ R LE L  AGAL     
Sbjct: 794  LGLRMIRGFREEDARRIEQARQAQSFTDVHDLGRRA---GLDTRALELLADAGALRGLAG 850

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R +   ++  +                 +FA         I+L    + +      ++ 
Sbjct: 851  HRHKARWAIAGV------------EPQLPLFAEGPRIEEPAISLP---LPSRGEELLSDY 895

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             +LG     HPL + +  L+    +   E V    G  +R+A +VV +Q+ +T  G  + 
Sbjct: 896  ALLGTTLGPHPLKLLRVQLKARRCRASRELVGMEHGRPVRIAGLVVGRQRPQTASG--VT 953

Query: 1017 WVTFSEPAKEYEANFF 1032
            ++T  +         +
Sbjct: 954  FITLEDEFGMVNVVVW 969


>gi|257463849|ref|ZP_05628236.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
 gi|317061383|ref|ZP_07925868.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
 gi|313687059|gb|EFS23894.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
          Length = 857

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/847 (38%), Positives = 515/847 (60%), Gaps = 29/847 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FVHL +H+ YSLL+G   + + + +  A +  AIAITD  N+F ALEF QKA   G++ 
Sbjct: 3   DFVHLHLHTEYSLLDGVGKIEDYMKRAKALRMKAIAITDHGNMFGALEFYQKAQKYGLKA 62

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIG ++ +       +  +    F     ++LL    EGYQ L+ L S  YL        
Sbjct: 63  IIGVEVYL---SEFPLEEKKGRNF----HLILLAENYEGYQNLMRLSSLAYLEG-FYYKP 114

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ-VAEKRLLTFKKLF-GDRLYVNLQ 187
           RI    L++  ++G++ L+   +G I       + +   E  +  ++ +F  +  Y+ +Q
Sbjct: 115 RIDKELLRKY-SKGILALSACLNGEIASYILEGAEESKIEACIREYQDIFGKENFYLEVQ 173

Query: 188 RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H   ++      +  L    ++PLVATN++ ++++ ++   DV++ +   + +S + R 
Sbjct: 174 AHEEKEQRQVNEALYALGKKLQIPLVATNDTHYVNKGEHLLQDVILCIQTGSHISDEKRM 233

Query: 247 RVT-PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
           R+   D YLK+  EM ++      EA++N+VEIA+RC   + +H    P +   E     
Sbjct: 234 RIEMQDLYLKSYEEMYAMLGEQYAEAIQNSVEIAKRCQLWIPMHEFQFPDYTLPEG---I 290

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              E  L+     GL  R  +G        +   +R ++EL++I +M ++GYF++V DFI
Sbjct: 291 ASLEEYLKKLTYEGLAKRYPRGLD------EAIVERAEYELSIINKMGYAGYFVVVWDFI 344

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +A+K  IP+GPGRGS AGS+ AYAL IT +DPL + L+FERFLNP+R+SMPD DID CQ
Sbjct: 345 AFARKKKIPIGPGRGSAAGSLVAYALEITQLDPLEYHLIFERFLNPERISMPDIDIDICQ 404

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           +RR E+I YV  KYG ++VAQI TFG+L+A+AA+RDVGR +++  S++D+  K IP   +
Sbjct: 405 ERRQEIIDYVVQKYGQDKVAQISTFGTLKARAAIRDVGRVMEVELSKIDKAAKCIPMFAS 464

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                + + ++   +     D  +  ++  + ++E   RH STHAAG++I  + L++ VP
Sbjct: 465 LR---EVLEENIDLKTMYQQDVELKNVINTAIRIENKVRHISTHAAGVLITKKSLTESVP 521

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603
           +Y D ++ +  TQ+ MK +E+ GL+K DFLGL+TLT+LQ++ D++ +    K+ L+ I  
Sbjct: 522 LYADSKNGIVSTQYQMKELEELGLLKIDFLGLRTLTILQRTQDYIEENTHKKIVLAEISL 581

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            D + Y +L+   + G+FQ+ES G+R  L+ ++P+   DIIAL+SLYRPGP+ + +V  +
Sbjct: 582 QDEKVYDMLSKGDSFGVFQMESRGLRSILKRLKPNSFGDIIALLSLYRPGPLGSGMVDDF 641

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK+GK+ IV  H  +  +L+ET GVI+YQEQVM+IA +++ YSL EAD+LRRAMGKK 
Sbjct: 642 IERKHGKKAIVYPHVSLQEVLEETYGVILYQEQVMKIANIMADYSLGEADLLRRAMGKKN 701

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            E M + + +FI  + K G  +  A  IF+L+ KFA YGFNKSH+AAYA+I+Y TA+ K+
Sbjct: 702 VEIMHENRSKFIERSIKKGYEREKAEEIFDLIDKFAGYGFNKSHSAAYALIAYWTAYFKS 761

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           HYP  F AA ++ E+ +++KI  +  DA+   ++I  P V  P   F V +++I ++L+A
Sbjct: 762 HYPKYFYAALLSSEISDIDKISFYFADAKAHGVEIQTPDVQFPSSRFVVKEDKILFALSA 821

Query: 842 IKGVGTT 848
           IK VGT 
Sbjct: 822 IKNVGTG 828


>gi|90961842|ref|YP_535758.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118]
 gi|90821036|gb|ABD99675.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118]
          Length = 1097

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/1028 (30%), Positives = 513/1028 (49%), Gaps = 53/1028 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV SSYSLL+  L ++  +         A+ +TD N+++  L+F  +   AGI+PI
Sbjct: 2    YAPLQVLSSYSLLQSPLRISEYVKLGKELGYSALVLTDINSMYGVLDFYHECVKAGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L     +                  + +   + GYQ L+ + S+            
Sbjct: 62   IGITLQSGDDE-----------------YIFIAKNSNGYQNLMNISSKRLTAVDENYKNI 104

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG--DRLYVNLQR 188
              L+ + E   + +I++   S   ++         +   ++   + L    + +Y  +  
Sbjct: 105  FKLTDITEY-LQDVIVILNPSYLTVN--------DIISDQVTELQTLVSAAETIYYGV-- 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                DR   +  +  A   +L  +      +L E DY +  VL A+     V+  +    
Sbjct: 154  -NPNDRDAINNDLMAAEKLQLETILLTPVKYLKERDYFSTKVLQAIGTGENVN-PNWNFK 211

Query: 249  TPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               +YL    E   +    L  A +N + +  +C+  L      LP F E          
Sbjct: 212  NDGNYLHTPEEYGRLGTDYLSNAYQNAINVIAQCNLTLNFPKTQLPHFKETNG----LSS 267

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E  LR     GL  R+A+  I    + ++Y+ RLD+EL+VI RM F  YFLIV D   +A
Sbjct: 268  EAFLRKLCQEGLAKRIAEENIK---NQEEYQNRLDYELSVIHRMGFDDYFLIVWDVTNFA 324

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +NNI  GPGRGS AGS+ +Y L ITDIDP+++ L+FERFLN +R  MPD D+D    +R
Sbjct: 325  HENNILTGPGRGSAAGSLVSYTLYITDIDPIKYDLIFERFLNEERAQMPDIDLDIPDIKR 384

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D +I Y+  KYG + +AQIITFG+L+ K  LRDV R   +   + D   K IP +    +
Sbjct: 385  DTIIEYLHQKYGQQHMAQIITFGTLKTKQVLRDVARVFDLKTYEADAWSKAIPKEYGITL 444

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A A     +     +     L E +  LEGL RH STHAAGI++ D  L   VP+  
Sbjct: 445  K-EAYASSQSLKNLVADNSKNRLLFETAIALEGLPRHYSTHAAGIILSDDDLVDHVPVQI 503

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                 + ++QF    +E+ GL+K DFLGL+ L++L+ ++  + +   +  D+  I  DD 
Sbjct: 504  G-GDGILMSQFAKNQVEEVGLLKMDFLGLRNLSILENTITLIKKGYHIDFDIRKINLDDP 562

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ET  +     T GIFQ ES+G+R  L  ++P   ED+ A+ +LYRPGPI NI  +  RK+
Sbjct: 563  ETLKIYQNAETSGIFQFESAGIRGVLTKLKPTSFEDVAAVNALYRPGPIQNIDEFIARKH 622

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+  I      ++ +LK+T G+++YQEQVMQ+A  + G++L +AD LRRAM KK  + + 
Sbjct: 623  GERPITYPSKELEGILKQTYGIMVYQEQVMQVASTMGGFTLGQADSLRRAMSKKKHDIIS 682

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + +  FI+GA K G +  +A  ++  + +F DYGFN+SHA AY+ +S++ A++K HYP  
Sbjct: 683  RMEVMFINGAMKKGYTHEVAKKVYAYIMEFGDYGFNRSHAVAYSKMSFELAYIKAHYPAA 742

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F AA +   + N  K K +  +A+   +++  P +N     + + +  IY+ L+ IK + 
Sbjct: 743  FFAALLNSVIGNPRKTKDYVLEAKNKGVKVHHPDINISQSLYILRNGGIYFGLSCIKSLR 802

Query: 847  TTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                + I++       F ++EDF  R+D + L R ++E L+++G  D FG SR +LL  L
Sbjct: 803  KNFLQDILQERKRSGIFKNMEDFLQRIDKRYLKRELIEILIYSGVFDTFGQSRKELLAML 862

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              +    +    N       +F+        K T+EK  + N     E E   LG Y SG
Sbjct: 863  PRLLSNIELSGNN-----VELFSILAPK---KTTVEKIEISND-ELLEKENYYLGAYLSG 913

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP++ Y  ++         +   + +   + +   +   +  +T+ GS++ +VT ++   
Sbjct: 914  HPVEKYAELIYLTNSTRVSQINESNKDKYVSMILQIKVIKIIRTKNGSQMAFVTAADQTG 973

Query: 1026 EYEANFFP 1033
              +  FFP
Sbjct: 974  NMDLTFFP 981


>gi|224541515|ref|ZP_03682054.1| hypothetical protein CATMIT_00685 [Catenibacterium mitsuokai DSM
            15897]
 gi|224525552|gb|EEF94657.1| hypothetical protein CATMIT_00685 [Catenibacterium mitsuokai DSM
            15897]
          Length = 1030

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1034 (33%), Positives = 556/1034 (53%), Gaps = 65/1034 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HLQ+ S+YS  E  L +N ++D   +    A+A+TD NN++ A EF +    A I+PI
Sbjct: 11   FGHLQIKSAYSFQESTLLINALIDNAKSKHIQALALTDDNNMYGAYEFYEACKKASIKPI 70

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G    I   D+L               + L      GY+ L+ +VS + L +       
Sbjct: 71   LGVNASIMFNDDL-------------IHLALYARDDVGYKDLVRIVSDINLNEN----KA 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV---------AEKRLLTFKKLFGDR 181
            I L  L     + L +++      +      +   +             + T KKLFG  
Sbjct: 114  ITLKALSNY-RDHLYVVSHEYEDRLIEKEATSKEDLLTHAQIESPVLSFMKTMKKLFGAS 172

Query: 182  LYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
              + +          R   +++ A   ++P +  N+  +L   D    D+L A     V+
Sbjct: 173  YRIMIVEDGLKGHTLRNQTLIKYAQFLDIPCIWGNDVRYLHPHDAFTLDLLQASKKGEVL 232

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            S KD   +T + YLK   E+  +FS  P+ ++NT E+   C   +Q     LPR+     
Sbjct: 233  S-KDYEPLTSERYLKTEKEIRELFSRYPDIIKNTEEMIDNCYGSIQKTKNGLPRYQTPHG 291

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D         LR+  + GL+ R     I       DY+ RL +EL  I  M +  YFLIV
Sbjct: 292  DSGA-----YLRHLCIKGLKQRFKNQTI-----TDDYKDRLLYELKTIHTMGYDDYFLIV 341

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D++Q+AKK+ I VGPGRGS AGS+ AY L IT+IDPL++ LLFERFLNP+R+SMPD D+
Sbjct: 342  FDYVQYAKKHGILVGPGRGSAAGSLVAYCLGITNIDPLKYDLLFERFLNPERVSMPDIDV 401

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  DRRDEVI+YV NKYGH+ VAQI+ F +   + A++D+G+ + +P  +++ + K++P
Sbjct: 402  DFQDDRRDEVIQYVCNKYGHDHVAQIVAFSTYGPRVAIKDLGKVMGIPLPRLEMIAKMVP 461

Query: 481  NDPAHPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              P H  S+  +   S  F++    DP + RL+     +E L R+ + HAAG+V+   PL
Sbjct: 462  TAPKHRKSITEVYSTSASFQDMIQKDPVLSRLIAPMSLVEYLPRNITMHAAGVVLSYEPL 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
              +VP+     SD+ ++Q++  +IEK GL+K DFLGLK LT++   +  + +R G    +
Sbjct: 522  RDVVPLVIGP-SDMIMSQYSKDYIEKTGLLKMDFLGLKNLTMIDYIMKDIERRLGQTFSI 580

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D  TYHL+    T G+FQLES+GMR  L  M+PD  +DI+A V+LYRPGP++NI
Sbjct: 581  NSIPLNDARTYHLIARGDTTGVFQLESNGMRSLLMKMKPDHFDDIVAAVALYRPGPMENI 640

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             +Y   +  K  I  +   ++P+LK T G++IYQEQ+MQIAQ+++G+SL  AD+LR+A+ 
Sbjct: 641  PLYLEGRKNKNNITYLVKELEPILKSTYGIMIYQEQIMQIAQVIAGFSLGRADILRKAVS 700

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK +  M   KE F+ GA K G  + IA+ +++++ KFA+YGFNKSH+ AY  ++YQ A+
Sbjct: 701  KKDESMMASMKEEFLQGAIKKGFDEKIALKLYQMIEKFANYGFNKSHSVAYGYMAYQLAY 760

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YP+ F AA ++ E  +     +  ++++++ ++I+PPS+N     F V +  I YS
Sbjct: 761  LKANYPLYFFAAILSNESGSASSKMRIIEESKRYGVKILPPSINYSYSRFVVEEGGIRYS 820

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L +IK VG    + I++      F  + DF +R+ S  L+ ++LESL+ AGA D F  +R
Sbjct: 821  LVSIKNVGAAGYKMILKEREKGLFKDMYDFLARIPS--LSSKMLESLIDAGAFDEFNKNR 878

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              L +++  + +Y Q                      +K   E+   EN   R E E+ V
Sbjct: 879  AYLRKNISLMLEYIQL------------------GVDEKPIFEEVR-ENKYERLEREREV 919

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG Y S HP+   K  ++   +  + +    +   NI +   + S +    +KG  + ++
Sbjct: 920  LGLYVSTHPIVYVKQKIKH-PLVNFVDVENYMD-RNILVVCSISSVRAIVDKKGREMAFI 977

Query: 1019 TFSEPAKEYEANFF 1032
               +   + E   F
Sbjct: 978  EGQDETGQVEFVCF 991


>gi|330503437|ref|YP_004380306.1| error-prone DNA polymerase [Pseudomonas mendocina NK-01]
 gi|328917723|gb|AEB58554.1| error-prone DNA polymerase [Pseudomonas mendocina NK-01]
          Length = 1022

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/1034 (26%), Positives = 468/1034 (45%), Gaps = 80/1034 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L   S+++   GA S   + ++ A     A+AITD   L   +   + +   G++ 
Sbjct: 3    DYAELHCLSNFTFQRGASSAQELFERAARLGYRALAITDECTLAGIVRAWEASKKTGVKL 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G ++ I+                  P +VLL    EGYQ L  L++R       K + 
Sbjct: 63   IVGSEVQIE----------------KGPKLVLLAENLEGYQALCGLITRARRR-AAKGTY 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+       +  +GL+ +           +       A   L   + +F +RL++ ++ H
Sbjct: 106  RLLHEDFV-VPLDGLLAI-----------WLSEGEATA---LPWLRSVFPERLWLGVELH 150

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
            RG D   R  ++++LA  H+LP VA  +    +       D + A+ H   V++      
Sbjct: 151  RGADDSARLQRLLELAAVHDLPTVACGDVHMHARGRRALQDCMTAIRHHLPVAEAGAHLF 210

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + +L+   E+  ++   PE L  ++ IA RCSF L       P  +     D     
Sbjct: 211  ANGERHLRRLEELGELYP--PELLAQSLRIAERCSFDLDELEYHYPHELVPAGHD----P 264

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR     G   R  +G  A        R +++ EL +IA +++  YFL V D +++A
Sbjct: 265  TSWLRVLVERGAAERWREGVPAAA------RTQIEHELALIAELEYESYFLTVHDIVRFA 318

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++ +I +  GRGS A S   +AL IT++DP    LLFERFL+ +R   PD D+DF  +RR
Sbjct: 319  REQHI-LCQGRGSAANSSVCFALGITELDPTESRLLFERFLSRERNEPPDIDVDFEHERR 377

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+YV  +YG  R A      +     A+RDV +AL +P  QV+ L        + P 
Sbjct: 378  EEVIQYVFRRYGRTRAALTAVVNTYHGAGAIRDVAKALGLPPDQVNALADCCGRWSSGPP 437

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            + + + +          +P + R+L ++ +L G  RH S H  G VI +  L  LVP+  
Sbjct: 438  TPERLLE----AGFDPQNPLLRRVLILTGELIGFPRHLSQHPGGFVISEHALDTLVPVEN 493

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
               ++  V Q++   +++ GL+K D L L  L+ L++    + + RG +  L+ +P +D 
Sbjct: 494  ATMTERTVIQWDKDDLDRVGLLKVDVLALGMLSALRRCFGLIERYRGTQWTLATLPKEDP 553

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNR 664
             TY +++   T+G FQ+ES      L  ++P+   D++  V++ RPGPI  D +  Y  R
Sbjct: 554  ATYAMISRADTIGAFQIESRAQMAMLPRLRPNTFYDLVIQVAIVRPGPIQGDMVHPYLRR 613

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKE 723
            +N +E I      + P+ + T GV ++QEQVM++A + + Y+  EAD LRR+M   K   
Sbjct: 614  RNEEEAIDYPSDELKPVFERTLGVPLFQEQVMELAIVAAEYTPGEADELRRSMAAWKRHG 673

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  ++R  S   + G ++     IF  +  F  YGF +SHAA++A+++Y + W+K H 
Sbjct: 674  GLEPHRQRLTSRMLEKGYTQEFTERIFRQIEGFGSYGFPESHAASFALLAYASCWLKCHE 733

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-----KVGDNRIYYS 838
            P  +  A +           +  QDAR+ ++++ P  V     D      + G+  I   
Sbjct: 734  PAAYACALVNSWPMGFYSPDQVLQDARRHDVEVRPVDVRYSDWDCSLEPNEHGEPAIRLG 793

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L  I+G+    AR I +A     F  +ED   R       R   E L  AGAL      R
Sbjct: 794  LRMIRGMREDDARRIEQARQSGSFRDVEDLSVRARLDASAR---ERLADAGALAGLAGHR 850

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             Q   ++  +             +   +FA         ++L   S          +   
Sbjct: 851  HQARWAVAGV------------EEQLPLFAGVSAPNEASLSLPAPS---QGEDLLTDYAT 895

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG     HPL + + +LR    +   E  A   G  + +A +V+ +Q+ +T  G  + +V
Sbjct: 896  LGTTLGPHPLALLRQVLRARRCRSSHELQAVEHGRPVSVAGLVIGRQRPQTASG--VIFV 953

Query: 1019 TFSEPAKEYEANFF 1032
            T  +         +
Sbjct: 954  TLEDEFGLVNVVVW 967


>gi|227890867|ref|ZP_04008672.1| DNA polymerase III alpha subunit [Lactobacillus salivarius ATCC
            11741]
 gi|227867276|gb|EEJ74697.1| DNA polymerase III alpha subunit [Lactobacillus salivarius ATCC
            11741]
          Length = 1109

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/1028 (30%), Positives = 513/1028 (49%), Gaps = 53/1028 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV SSYSLL+  L ++  +         A+ +TD N+++  L+F  +   AGI+PI
Sbjct: 14   YAPLQVLSSYSLLQSPLRISEYVKLGKELGYSALVLTDINSMYGVLDFYHECVKAGIKPI 73

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L     +                  + +   + GYQ L+ + S+            
Sbjct: 74   IGITLQSSDDE-----------------YIFIAKNSNGYQNLMNISSKRLTAVDENYKNI 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG--DRLYVNLQR 188
              L+ + E   + +++L            +   + +   ++   + L    + +Y  +  
Sbjct: 117  FKLTDITEYLQDVIVVL---------NPSYLTVNDIISDQVTELQTLVSAAETIYYGV-- 165

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                DR   +  +  A   +L  +      +L E DY +  VL A+     V+  +    
Sbjct: 166  -NPNDRDAINNDLMAAEKLQLETILLTPVKYLKERDYFSTKVLQAIGTGENVN-PNWNFK 223

Query: 249  TPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               +YL    E   +    L  A +N + +  +C+  L      LP F E          
Sbjct: 224  NDGNYLHTPEEYERLGTDYLSSAYQNAINVIAQCNLTLNFPKTQLPHFKETNG----LNS 279

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+ LR     GL  R+A+  I    + ++Y+ RLD+EL+VI RM F  YFLIV D   +A
Sbjct: 280  EDFLRKLCQEGLAKRIAEENIK---NQEEYQNRLDYELSVIHRMGFDDYFLIVWDVTNFA 336

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +NNI  GPGRGS AGS+ +Y L ITDIDP+++ L+FERFLN +R  MPD D+D    +R
Sbjct: 337  HENNILTGPGRGSAAGSLVSYTLYITDIDPIKYDLIFERFLNEERAQMPDIDLDIPDIKR 396

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D +I Y+  KYG + +AQIITFG+L+ K  LRDV R   +   + D   K IP +    +
Sbjct: 397  DTIIEYLHQKYGQQHMAQIITFGTLKTKQVLRDVARVFDLKTYEADAWSKAIPKEYGITL 456

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A A     +     +     L E +  LEGL RH STHAAGI++ D  L   VP+  
Sbjct: 457  K-EAYASSQSLKNLVADNSKNRLLFETAIALEGLPRHYSTHAAGIILSDDDLVDHVPVQI 515

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                 + ++QF    +E+ GL+K DFLGL+ L++L+ ++  + +   +  D+  I  DD 
Sbjct: 516  G-GDGILMSQFAKNQVEEVGLLKMDFLGLRNLSILENTITLIKKGYHIDFDIRKINLDDP 574

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ET  +     T GIFQ ES+G+R  L  ++P   ED+ A+ +LYRPGPI NI  +  RK+
Sbjct: 575  ETLKIYQNAETSGIFQFESAGIRGVLTKLKPTSFEDVAAVNALYRPGPIQNIDEFIARKH 634

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+  I      ++ +LK+T G+++YQEQVMQ+A  + G++L +AD LRRAM KK  + + 
Sbjct: 635  GERPITYPSKELEGILKQTYGIMVYQEQVMQVASTMGGFTLGQADSLRRAMSKKKHDIIS 694

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + +  FI+GA K G +  +A  ++  + +F DYGFN+SHA AY+ +S++ A++K HYP  
Sbjct: 695  RMEVMFINGAMKKGYTHEVAKKVYAYIMEFGDYGFNRSHAVAYSKMSFELAYIKAHYPAA 754

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F AA +   + N  K K +  +A+   +++  P +N     + + +  IY+ L+ IK + 
Sbjct: 755  FFAALLNSVIGNPRKTKDYVLEAKNKGVKVHHPDINISQSLYILRNGEIYFGLSCIKSLR 814

Query: 847  TTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                + I++       F ++EDF  R++ + L R ++E L+++G  D FG SR +LL  L
Sbjct: 815  KNFLQDILQERKRSGIFKNMEDFLQRINKRYLKRELIEILIYSGVFDTFGQSRKELLAML 874

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              +    +    N       +F+        K T+EK  + N     E E   LG Y SG
Sbjct: 875  PRLLSNIELSGNN-----VELFSILAPK---KTTVEKIEISND-ELLEKENYYLGAYLSG 925

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP++ Y  ++         +   + +   + +   +   +  +T+ GS++ +VT ++   
Sbjct: 926  HPVEKYVELIYLTNSTRVSQINESNKDKYVSMILQIKVIKIIRTKNGSQMAFVTAADQTG 985

Query: 1026 EYEANFFP 1033
              +  FFP
Sbjct: 986  NMDLTFFP 993


>gi|134287639|ref|YP_001109805.1| DNA polymerase III, alpha subunit [Burkholderia vietnamiensis G4]
 gi|134132289|gb|ABO60024.1| DNA polymerase III, alpha subunit [Burkholderia vietnamiensis G4]
          Length = 1048

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/1037 (28%), Positives = 477/1037 (45%), Gaps = 64/1037 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AA + 
Sbjct: 10   PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAANMA 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             II          + ++T     P     ++       +GY  L E +S   +  + K +
Sbjct: 70   LII--------GSHFRLTAADGAPALAFTAL---AMNRDGYGNLCEFISLGRMRGK-KGT 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L+        +        I    F  + Q  + ++  F ++FGDR +V L  
Sbjct: 118  YRLAPLDLEHPEAPYTHLRGLPDCIAILSPDFPANEQRLDAQVEWFARVFGDRAWVALTL 177

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H R  D      V ++A  H +P+VAT+  L          DVL  +     VS+     
Sbjct: 178  HARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGRPVSECGYEL 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  + +++     ALE TV +ARRC+F L       P  +     D    
Sbjct: 238  APNAERHLRSRLRLANLYP--AGALEETVRVARRCTFSLDDLKYEYPDELVPAGTD---- 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR +   G   R   G         D + +++ EL +IA +K+  YFL V D +Q+
Sbjct: 292  PATYLREQTYIGARRRFPAGI------PIDVQAQIEHELQLIADLKYEAYFLTVYDIVQF 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I +  GRGS A S   Y L +T++DP R S+LFERF++ +R   PD D+DF   R
Sbjct: 346  AREQGI-LCQGRGSAANSSVCYCLGVTEVDPSRQSMLFERFISKERNEPPDIDVDFEHQR 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++Y+  KYG +R A      + + ++ALR+ G+AL +  + VDR+ K      +  
Sbjct: 405  REEVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDPAIVDRVAKQHHWFDSRA 464

Query: 487  VSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              LQ      RF EA L    P   +    + +L G  RH S H+ G VI    L++LVP
Sbjct: 465  DLLQ------RFSEAGLDPDAPLNQQWAAFAAQLLGYPRHLSQHSGGFVISRGKLTRLVP 518

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPF 603
            +      D  + Q++   IE  G++K D L L  L++++++LD +  +RG   +L  IP 
Sbjct: 519  VENAAMEDRSIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISEKRGETFELQDIPA 578

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661
            +D  TY +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGP+   +   +
Sbjct: 579  EDKATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQGGMVHPF 638

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R+ G E +      ++  L  T GV I+QEQVMQ+A L +G+S  EAD LRRAM   K
Sbjct: 639  LRRRQGLEPVTFPSEGMEKALARTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWK 698

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K  ++   ER +SG  + G  +  A +IF  +  F +YGF +SHAA++A++ Y +AW++
Sbjct: 699  RKGGLEPYHERLVSGMLERGYDREFAESIFAQIKGFGEYGFPESHAASFALLVYSSAWLR 758

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI----Y 836
             H P  FLAA +  +        +  QDAR+  ++++P  VN    D  +          
Sbjct: 759  RHEPAVFLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSALEGPATSAPVR 818

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
               + ++G+    A  I  A A +PF  + D   R    + + +VL              
Sbjct: 819  LGFSLLRGMREDVAGRIELARAARPFVDVADLARRARLDRHDLQVL-------------- 864

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R   L SL   ++ A W+        + +   E+        L + S  +  V    + 
Sbjct: 865  ARANALCSLTGGRRAALWLAAAALPDRDLLRGTERDD--TVPALPQASEGHEIV---TDY 919

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            R +GF    HPL + +  L    ++  E+      G   R   +V  +Q+  T  G  + 
Sbjct: 920  RAMGFTLGRHPLALLRERLALDRLQSAEQLATLRSGQLARACGLVTVRQRPGTANG--VL 977

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++T  +   +     +P
Sbjct: 978  FMTLEDETGQVNVILWP 994


>gi|111023190|ref|YP_706162.1| error-prone DNA polymerase [Rhodococcus jostii RHA1]
 gi|110822720|gb|ABG98004.1| DNA-directed DNA polymerase alpha subunit (DNA polymerase III alpha
            subunit) [Rhodococcus jostii RHA1]
          Length = 1084

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1036 (27%), Positives = 468/1036 (45%), Gaps = 72/1036 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +  +  L  HS++S L+GA     ++++       AIA+TD +  +  + F++ A    
Sbjct: 57   STVPYAELHAHSAFSFLDGASPPEELVEEAVRLGLEAIALTDHDGFYGVVRFAEAAKELN 116

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++              L + +           +++L    EGY+RL   ++  +L    K
Sbjct: 117  MRT--------AFGSELTLDD---------AHLLVLARGQEGYRRLSREIAAAHLAGGEK 159

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
              +R  L  L +       +LTG   G + +A        A  RL      F  DR+ V 
Sbjct: 160  GKLRYDLDRLTDAAGGHWQILTGCRKGHVRQALAAGGPDAAAARLRELIDRFGADRVTVE 219

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK- 243
            L  H    D  R + + +LA  H LP++A+  + F           + AV     +    
Sbjct: 220  LTHHGIAEDAERNASLAELAQQHGLPVIASTAAHFAGPPRRRLAMAMAAVRARQSLDDAA 279

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++  EM  +F+  PEA+    ++ R C+F L++ AP LP F   +    
Sbjct: 280  GHLAPAGGAHLRSGEEMAHLFAAYPEAVRGAADLGRECAFDLRLIAPQLPPFDVPDG--- 336

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E + LR   + G   R      A     + YR +++ EL++I  + F GYFL+V D 
Sbjct: 337  -HTEASWLRQLTMDGARRRYG----APADRPEAYR-QIEHELDIITGLNFPGYFLVVHDI 390

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + + K N+I +  GRGS A S   YA+ IT++DP+R  LLFERFL+P+R   PD D+D  
Sbjct: 391  VSFCKNNDI-LCQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLSPERDGPPDIDVDIE 449

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR+E I++V  KYG +  AQ+    + + K+++RD+ RAL     Q D   K +    
Sbjct: 450  SDRREEAIQHVYAKYGRQYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSKQVSRWG 509

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                           +E     P    +LE++ ++EG  RH   H+ G+VI DRP++ + 
Sbjct: 510  GIG------------KEVGTDIPPA--VLELAAQIEGFPRHLGIHSGGMVICDRPIADVC 555

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+      +  V Q++       GL+KFD LGL  L+ L   +D +A+   ++VDL+ + 
Sbjct: 556  PVEWARMENRSVLQWDKDDCAAVGLVKFDMLGLGMLSALHYMIDLVAEHKGIEVDLAQLD 615

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VV 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI       
Sbjct: 616  LSEEAVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVHP 675

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+N  E +   HP ++  LK T GV ++QEQ+MQ+A  ++G+S +EAD LRRAM  K
Sbjct: 676  YIRRRNKLEPVTYDHPSLEKALKRTLGVPLFQEQLMQMAVDVAGFSPAEADQLRRAMGSK 735

Query: 720  KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E+M++ + R   G  + +GI   +A  I+E L  FA++GF +SH+ ++A + + ++W
Sbjct: 736  RSPEKMERLRGRLYQGMRELHGIGDDVADRIYEKLYAFANFGFPESHSQSFAALVFYSSW 795

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI--Y 836
             K H+P  F A  +  +       +    DAR+  + +    +N       V        
Sbjct: 796  FKLHHPAAFCAGLLRAQPMGFYSPQSLVADARRHGVPVHGADINASLAHATVEAGGTEVR 855

Query: 837  YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L  ++ +GT  A  I+E+  D  P+ S  D   RV+    +    ESL  AGALD FG
Sbjct: 856  LGLGEVRHIGTALAERIVESRGDGGPYTSFLDLTGRVEL---STAQAESLATAGALDSFG 912

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR + L         A    ++R            G  +   TL   S          +
Sbjct: 913  LSRREALW----AAGAAAGERRDRLPG--------IGASTRAPTLPGMS---DLELAAAD 957

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +P    +P L  +G+      +    G+ + +   V  +Q+  T  G  +
Sbjct: 958  VWATGVSPDTYPTQFLRPQLDALGVIPAAGLLDVPDGDRVLVGGAVTHRQRPATAAG--V 1015

Query: 1016 GWVTFSEPAKEYEANF 1031
             ++   +         
Sbjct: 1016 TFINLEDETGMVNVVC 1031


>gi|330875010|gb|EGH09159.1| error-prone DNA polymerase [Pseudomonas syringae pv. morsprunorum
            str. M302280PT]
          Length = 1031

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/1039 (26%), Positives = 458/1039 (44%), Gaps = 84/1039 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + D+       A+AITD   L   +   Q +   G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFDRALRHGYAALAITDECTLAGIVRAWQASKDTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++                  P IVLLV +  GYQ L  L++      + K   R
Sbjct: 65   VGSEMHLENG----------------PKIVLLVESLTGYQALCTLITVARRRAK-KGEYR 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +       +    L +      G         +           ++ F +RL++ ++ HR
Sbjct: 108  LLREDFDHLPDGLLAIWLADIEGDAQACLAQGN---------WLRERFAERLWLGVELHR 158

Query: 191  G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
            G  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V++       
Sbjct: 159  GADDEQRLADLLALAQSLAIPAVASGDVHMHARGRRALQDTITAIRHHTTVAEAGHLLFA 218

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + +L++   +   + D    L  TV IARRC+F         P  +  +     +   
Sbjct: 219  NGERHLRSLDALAEHYPDW--LLAETVRIARRCTFTFDQLQYEYPHELVPKG----QTAT 272

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR     G+  R  +G           R +++ EL +I   KF  YFL V D +++A+
Sbjct: 273  SWLRELTERGIRRRWPKGLSVAA------RAQVEKELALITEKKFDSYFLTVHDIVEFAR 326

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  DRR+
Sbjct: 327  SQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISRERDEPPDIDVDFEHDRRE 385

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  +YG  R A      +     ALRDV + L +P  Q++ L             
Sbjct: 386  EVIQYIFRRYGRGRTALTAVASTYHGSGALRDVAKVLGLPPDQINALADAFSRWS----- 440

Query: 489  LQAIADDSRFRE--ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              A+    R RE       P + R+L ++ +L G  RH S H  G VI + PL  LVP+ 
Sbjct: 441  -DALPSAERLREYGFDAETPILKRVLTLTGELIGFPRHLSQHPGGFVISEHPLDTLVPVE 499

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                ++  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P DD
Sbjct: 500  NAAMAERTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKQWTLASLPSDD 559

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
              TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  Y  
Sbjct: 560  RPTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLR 619

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+NG+E +    P +  + + T GV ++QEQVM++A + + Y+  EAD LRRAM   K  
Sbjct: 620  RRNGEEAVTYP-PKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADQLRRAMAAWKRH 678

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +D  +ER  +G   NG     A  IFE +  F  YGF +SHAA++A+++Y + W+K H
Sbjct: 679  GGLDPHRERLRTGMLANGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCH 738

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD---------N 833
             P  F  A +           +  QDAR+ +I+I P  V     D  +            
Sbjct: 739  EPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSHWDCTLEPLDHPDSTRNL 798

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I   L  ++      A  I  A A +PF    D   R     L+ R  E+L  +GAL  
Sbjct: 799  AIRLGLRMLRSFREEDALRIEAARAKRPFADATDLTQRA---GLDSRAAEALADSGALRG 855

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R +    +  +                 +F  +  +   ++TL   +V   +    
Sbjct: 856  LIGHRHRARWEVAGV------------EAQRPLF-DDLTSEEVQVTLPLPTV---AEDLV 899

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +   LG     HPL + +  L     +  ++ +       + +A +V+ +Q+  T  G 
Sbjct: 900  ADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLTLENNRTLSVAGLVIGRQRPGTASG- 958

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + +VT  +         +
Sbjct: 959  -VTFVTLEDEFGMVNVVVW 976


>gi|320324026|gb|EFW80109.1| error-prone DNA polymerase [Pseudomonas syringae pv. glycinea str.
            B076]
          Length = 1031

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/1042 (26%), Positives = 469/1042 (45%), Gaps = 84/1042 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  +  L   S++S   GA S   + ++ +     A+AITD   L   +   Q + + G+
Sbjct: 2    TSEYAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASISTGL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
              IIG ++ I+                  P  VLLV +  GY+ L +L++        K 
Sbjct: 62   PLIIGSEMHIENG----------------PKAVLLVESQTGYEALCKLITVARRR-ARKG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+      E  ++GL+         I        +Q         ++ F +RL++ ++
Sbjct: 105  EYRLLREDF-EPSSDGLLA--------IWLPDIEGDAQACLAHGRWLRERFAERLWLGVE 155

Query: 188  RHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             HRG  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V++    
Sbjct: 156  LHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEAGHL 215

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +L+    +   + D    L  +V IARRC+F L+      P  +  +     +
Sbjct: 216  LFANGERHLRPLDALAEHYPDW--LLAESVRIARRCTFDLKQLKYEYPHELVPKG----Q 269

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     G   R   G           R +++ EL +I   KF  YFL V D ++
Sbjct: 270  TPTSWLRELTERGARKRWPNGLTPAT------RAQVEKELALITEKKFDSYFLTVHDIVE 323

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  D
Sbjct: 324  FARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISRERNEPPDIDVDFEHD 382

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L +        
Sbjct: 383  RREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPDQINALAEAFSRWS-- 440

Query: 486  PVSLQAIADDSRFREARLAD--PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                 ++    R RE       P + R+L ++ +L G  RH S H  G VI + PL  LV
Sbjct: 441  ----DSLPSPERLREYGFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLV 496

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602
            P+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P
Sbjct: 497  PVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADLP 556

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             DD ETY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  
Sbjct: 557  GDDRETYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHP 616

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+N +E I    P +  + + T GV ++QEQVM++A + +GY+  EAD LRRAM   
Sbjct: 617  YLRRRNKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAAGYTPGEADELRRAMAAW 675

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    ++  +ER  +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W+
Sbjct: 676  KRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWL 735

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------- 832
            K H P  F  A +           +  QDAR+ +I+I P  V     D  +         
Sbjct: 736  KCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDST 795

Query: 833  --NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                I   L  ++G     AR I  A + + F    D   R     L+ R  E+L  +GA
Sbjct: 796  RNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLTLRA---GLDARAAEALADSGA 852

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            L      R +    +  +                 +F ++  +   ++TL   +V   + 
Sbjct: 853  LRGLIGHRHRARWEVAGV------------EAQRPLF-NDLPSEDTQVTLPLPTV---AE 896

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +   LG     HPL + +  L     +  ++ ++      + +A +V+ +Q+  T 
Sbjct: 897  DLMADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENDRTLSVAGLVIGRQRPGTA 956

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G  + +VT  +         +
Sbjct: 957  SG--VTFVTLEDEFGMVNVVVW 976


>gi|254233973|ref|ZP_04927298.1| DNA polymerase III (alpha chain) dnaE2 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis C]
 gi|124599502|gb|EAY58606.1| DNA polymerase III (alpha chain) dnaE2 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis C]
          Length = 1079

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1040 (27%), Positives = 483/1040 (46%), Gaps = 62/1040 (5%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + +  S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A
Sbjct: 38   ERVGSSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAA 97

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                ++ + G       + +L  T + + P P  P +++L    EGY+RL   ++  +L 
Sbjct: 98   AELDVRTVFGA------ELSLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLA 151

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-R 181
               K   R     L E       +LTG   G + +A   +        L      F    
Sbjct: 152  GGEKGKPRYDFDALTEAAGGHWHILTGCRKGHVAQALPQSGPTADAAALPDLVDPFTPSA 211

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TV 239
            + + L  H    D  R + +  LA    + +VAT  + F           + A+    ++
Sbjct: 212  VSIELTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSL 271

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             S           ++++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +
Sbjct: 272  DSAAGWLAPLGGAHVRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPD 331

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E++ LR+  +AG   R      A   ++     +++ EL VIA+++F GYFL+
Sbjct: 332  G----HTEDSWLRSLVMAGARERYGPPKSAPRAYS-----QIEHELKVIAQLRFPGYFLV 382

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D  ++ + N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D
Sbjct: 383  VHDITRFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDID 441

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID   D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K +
Sbjct: 442  IDIESDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQV 501

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +                  +A   D   +++++++ ++  L RH   H+ G+VI DRP+
Sbjct: 502  SHWTG---------------QADDVDGIPEQVIDLATQIRNLPRHLGIHSGGMVICDRPI 546

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            + + P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VDL
Sbjct: 547  ADVCPVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDL 606

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   
Sbjct: 607  ARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGG 666

Query: 659  --VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
                Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRA
Sbjct: 667  SVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRA 726

Query: 717  M-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            M  K+  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + +
Sbjct: 727  MGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVF 786

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             +AW K H+P  F AA +  +       +    DAR+  + +  P VN         +  
Sbjct: 787  YSAWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAG 846

Query: 835  I--YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
                  L A++ +G   A  ++    A+ PF SL D  SRV     +   +E+L  AGAL
Sbjct: 847  TEVRLGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRVQL---SVPQVEALATAGAL 903

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
             CFG SR           +         T + + +      +      +      +    
Sbjct: 904  GCFGMSRR----------EALWAAGAAATGRPDRLPGVGSSSH-----IPALPGMSELEL 948

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +    G     +P    +  L  MG+   E   +   G+ + +A  V  +Q+  T +
Sbjct: 949  AAADVWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQ 1008

Query: 1012 GSRIGWVTFSEPAKEYEANF 1031
            G  + ++   +         
Sbjct: 1009 G--VTFINLEDETGMVNVLC 1026


>gi|71735001|ref|YP_274870.1| error-prone DNA polymerase [Pseudomonas syringae pv. phaseolicola
            1448A]
 gi|123775093|sp|Q48IB1|DNAE2_PSE14 RecName: Full=Error-prone DNA polymerase
 gi|71555554|gb|AAZ34765.1| DNA polymerase III, alpha subunit, putative [Pseudomonas syringae pv.
            phaseolicola 1448A]
 gi|320329030|gb|EFW85029.1| error-prone DNA polymerase [Pseudomonas syringae pv. glycinea str.
            race 4]
          Length = 1031

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/1042 (26%), Positives = 469/1042 (45%), Gaps = 84/1042 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  +  L   S++S   GA S   + ++ +     A+AITD   L   +   Q + + G+
Sbjct: 2    TSEYAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASISTGL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
              IIG ++ I+                  P  VLLV +  GY+ L +L++        K 
Sbjct: 62   PLIIGSEMHIENG----------------PKAVLLVESQTGYEALCKLITVARRR-ARKG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+      E  ++GL+         I        +Q         ++ F +RL++ ++
Sbjct: 105  EYRLLREDF-EPSSDGLLA--------IWLPDIEGDAQACLAHGRWLRERFAERLWLGVE 155

Query: 188  RHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             HRG  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V++    
Sbjct: 156  LHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEAGHL 215

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +L+    +   + D    L  +V IARRC+F L+      P  +  +     +
Sbjct: 216  LFANGERHLRPLDALAEHYPDW--LLAESVRIARRCTFDLKQLKYEYPHELVPKG----Q 269

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     G   R   G           R +++ EL +I   KF  YFL V D ++
Sbjct: 270  TPTSWLRELTERGARKRWPNGLTPAT------RAQVEKELALITEKKFDSYFLTVHDIVE 323

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  D
Sbjct: 324  FARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISRERNEPPDIDVDFEHD 382

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L +        
Sbjct: 383  RREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPDQINALAEAFSRWS-- 440

Query: 486  PVSLQAIADDSRFREARLAD--PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                 ++    R RE       P + R+L ++ +L G  RH S H  G VI + PL  LV
Sbjct: 441  ----DSLPSPERLREYGFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLV 496

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602
            P+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P
Sbjct: 497  PVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADLP 556

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             DD ETY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  
Sbjct: 557  GDDRETYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHP 616

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+N +E I    P +  + + T GV ++QEQVM++A + +GY+  EAD LRRAM   
Sbjct: 617  YLRRRNKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAAGYTPGEADELRRAMAAW 675

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    ++  +ER  +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W+
Sbjct: 676  KRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWL 735

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------- 832
            K H P  F  A +           +  QDAR+ +I+I P  V     D  +         
Sbjct: 736  KCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDST 795

Query: 833  --NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                I   L  ++G     AR I  A + + F    D   R     L+ R  E+L  +GA
Sbjct: 796  RNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLTLRA---GLDARAAEALADSGA 852

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            L      R +    +  +                 +F ++  +   ++TL   +V   + 
Sbjct: 853  LRGLIGHRHRARWEVAGV------------EAQRPLF-NDLPSEDTQVTLPLPTV---AE 896

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +   LG     HPL + +  L     +  ++ ++      + +A +V+ +Q+  T 
Sbjct: 897  DLMADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENDRTLSVAGLVIGRQRPGTA 956

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G  + +VT  +         +
Sbjct: 957  SG--VTFVTLEDEFGMVNVVVW 976


>gi|118471589|ref|YP_886009.1| error-prone DNA polymerase [Mycobacterium smegmatis str. MC2 155]
 gi|118172876|gb|ABK73772.1| DNA polymerase III, alpha subunit, putative [Mycobacterium smegmatis
            str. MC2 155]
          Length = 1095

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/1035 (27%), Positives = 483/1035 (46%), Gaps = 62/1035 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS+YS L+GA +   ++++ A     AIA+TD + L+  + F++ A    +  
Sbjct: 61   PYAELHAHSAYSFLDGASTPEELVEEAARLNLRAIALTDHDGLYGVVRFAEAARELDVAT 120

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + G       + +L    + + P P  P +++L    EGY+RL   +++ +L    K   
Sbjct: 121  VFGA------ELSLSNVARTEDPDPPGPHLLVLARGPEGYRRLSREIAKAHLAGGEKGRP 174

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R     L E       +LTG   G + +A        A   L      F  DR+ + L  
Sbjct: 175  RYDFDQLTEAAGGHWHILTGCRKGHVRQALSDGGPDAAAAALADLVDRFGADRVSIELTH 234

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRP 246
            H    D  R + + +LA    L +VAT  + F +         + A+   +++ +     
Sbjct: 235  HGHPCDDERNAALAELAPRFGLGVVATTAAHFATPSRGRLAMAMAAIRARNSIDTAAGWL 294

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  +L++  EM  +F   PE +    ++  +C+F L + AP LP F   +       
Sbjct: 295  APLGGVHLRSGEEMARLFD--PEFVAAAADLGEQCAFGLALIAPQLPPFDVPDG----HT 348

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E++ LR+ A+AG   R      A   +      +++ EL +I +++F GYFL+V D  Q+
Sbjct: 349  EDSWLRHLAMAGAARRYGPPERAPKAY-----AQIEHELRIIEQLRFPGYFLVVHDITQF 403

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             + NNI +  GRGS A S   YAL +T++DP+   LLFERFL+P R   PD DID   D 
Sbjct: 404  CRDNNI-LCQGRGSAANSAVCYALGVTNVDPIANDLLFERFLSPARDGPPDIDIDIESDL 462

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+ VI+YV  +YG +  AQ+    + + ++A+RD+ RAL     Q D   K +      P
Sbjct: 463  RENVIQYVYERYGRDYAAQVANVITYRGRSAIRDMARALGFSQGQQDAWSKHLSRWDGRP 522

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                   D     E         +++E++ ++  L RH   H+ G+VI DRP++ + P+ 
Sbjct: 523  -------DSPDVAEIPE------QVIELANQIANLPRHMGIHSGGMVICDRPIADVCPVE 569

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                 +  V Q++       GL+KFD LGL  L+ L  ++D +A+   ++VDL+ +   +
Sbjct: 570  WARMENRSVLQWDKDDCAAIGLVKFDMLGLGMLSALHYAIDLVAEHKGIEVDLATLDLSE 629

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
               Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI       Y  
Sbjct: 630  PAVYEMLQRADSVGVFQVESRAQMATLPRLKPREFYDLVVEVALIRPGPIQGGSVHPYIK 689

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R+NG+E +   HP ++P LK+T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K+  
Sbjct: 690  RRNGQEPVTYDHPSMEPALKKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSKRST 749

Query: 723  EEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             +M + + RF  G  + +GI+  +A  I+E L  FA++GF +SH+ ++A + + ++W K 
Sbjct: 750  AKMRRLRSRFYDGMRERHGITGVVADRIYEKLEAFANFGFPESHSLSFASLVFYSSWFKL 809

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSL 839
            H+P  F AA +  +       +    DAR+  + +  P VN       + +    +   L
Sbjct: 810  HHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHAGLENRGLDVRLGL 869

Query: 840  AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             +++ +G   A+ I+ E  A+  F SL D  SRV          E+L  AGAL CFG +R
Sbjct: 870  GSVRHIGDDLAQRIVDEREANGQFTSLLDLTSRVQLT---VPQTEALATAGALGCFGITR 926

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             + L +       A     +R     +              +      ++      +   
Sbjct: 927  REGLWAAG----AAATQRPDRLPGVGS-----------STHIPPLPGMSALELSAADVWA 971

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             G     +P +  +  L  +G+   +  +    G  I +A  V  +Q+  T +G  + ++
Sbjct: 972  TGISPDSYPTEYLRKHLDSLGVVPTDRLLDVADGTRILVAGAVTHRQRPATAQG--VTFI 1029

Query: 1019 TFSEPAKEYEANFFP 1033
               +          P
Sbjct: 1030 NLEDEKGMVNVLCAP 1044


>gi|331008498|gb|EGH88554.1| error-prone DNA polymerase [Pseudomonas syringae pv. tabaci ATCC
            11528]
          Length = 1031

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/1042 (26%), Positives = 466/1042 (44%), Gaps = 84/1042 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  +  L   S++S   GA S   + ++       A+AITD   L   +   Q + + G+
Sbjct: 2    TSEYAELHCLSNFSFQRGASSARELFERALRHGYQALAITDECTLAGIVRAWQASISTGL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
              IIG ++ I+                  P  VLLV +  GY+ L +L++        K 
Sbjct: 62   PLIIGSEMHIENG----------------PKAVLLVESQTGYEALCKLITVARRR-ARKG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+      E   +GL+         I        +Q         ++ F +RL++ ++
Sbjct: 105  EYRLLREDF-EPSPDGLLA--------IWLPEIEGDAQACLAHGRWLRERFAERLWLGVE 155

Query: 188  RHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             HRG  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V++    
Sbjct: 156  LHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEAGHL 215

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +L+    +   + D    L  +V IARRC+F L+      P  +  +     +
Sbjct: 216  LFANGERHLRPLDALAEHYPDW--LLAESVRIARRCTFDLKQLKYEYPHELVPKG----Q 269

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     G   R   G           R +++ EL +I   KF  YFL V D ++
Sbjct: 270  TPTSWLRELTERGARKRWPNGLTPAT------RAQVEKELALITEKKFDSYFLTVHDIVE 323

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  D
Sbjct: 324  FARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERNEPPDIDVDFEHD 382

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L          
Sbjct: 383  RREEVIQYIFRRYGRGRAALTAVASTYHGSGAVRDVAKVLGLPPDQINALADAFSRWS-- 440

Query: 486  PVSLQAIADDSRFREARLAD--PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                 ++    R RE       P + R+L ++ +L G  RH S H  G VI + PL  LV
Sbjct: 441  ----DSLPPPERLREYGFDADMPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLV 496

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602
            P+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P
Sbjct: 497  PVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADLP 556

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             DD +TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  
Sbjct: 557  GDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHP 616

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+N +E I    P +  + + T GV ++QEQVM++A + +GY+  EAD LRRAM   
Sbjct: 617  YLRRRNKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAAGYTPGEADELRRAMAAW 675

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    ++  +ER  +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W+
Sbjct: 676  KRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWL 735

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------- 832
            K H P  F  A +           +  QDAR+ +I+I P  V     D  +         
Sbjct: 736  KCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDST 795

Query: 833  --NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                I   L  ++G     AR I  A + + F    D   R     L+ R  E+L  +GA
Sbjct: 796  RNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLSLRA---GLDARAAEALADSGA 852

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            L      R +    +  +                 +F ++  +   ++TL   +V   + 
Sbjct: 853  LRGLIGHRHRARWEVAGV------------EAQRPLF-NDLPSEDTQVTLPLPTV---AE 896

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +   LG     HPL + +  L     +  ++ ++      + +A +V+ +Q+  T 
Sbjct: 897  DLMADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENDRTLSVAGLVIGRQRPGTA 956

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G  + +VT  +         +
Sbjct: 957  SG--VTFVTLEDEFGMVNVVVW 976


>gi|86360883|ref|YP_472770.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42]
 gi|86284985|gb|ABC94043.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42]
          Length = 1087

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/1049 (26%), Positives = 472/1049 (44%), Gaps = 92/1049 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQV + +S L GA S   +          A+ I D N+L   +   + + A G++ 
Sbjct: 2    RYAELQVTTHFSFLRGASSAEELFATAKLMGIAALGIADRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC                +       SI++  +    Y RL  L++    L +G+   
Sbjct: 62   VVGC----------------RLDLQGGMSIIVYPTDRTAYSRLTRLLT----LGKGRGGK 101

Query: 130  RICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              C+  L+++     GLI +          A           +L    ++FGDR YV+L 
Sbjct: 102  ANCILHLKDVAHYSEGLIGILVPDMPDDGCAV----------QLRKMAEIFGDRAYVSLC 151

Query: 188  -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
             R R  D+ R  ++  LA  H +  V TN+ LF      +  DV+  +   T +      
Sbjct: 152  LRRRPNDQLRLHKLSNLAAQHRVKTVVTNDVLFHEPGRRQLQDVVTCIRTGTTIDDVGFE 211

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 D YLK   EM  +F   PEAL  T EI  RC F L+      P    +E      
Sbjct: 212  RERHADRYLKPPEEMARLFPRYPEALSRTAEIVERCRFSLEELVYQYP----EEALIPGM 267

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L +    G++ R  +G  A         + +  EL++I  MK++ YFL V   ++
Sbjct: 268  TAQQSLEHYTWEGVKTRYPEGLPAH------VEKTIRHELSLIETMKYAPYFLTVFSIVR 321

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +
Sbjct: 322  YARSQGI-LCQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHE 380

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+++   YGH++ A   T    +AK A+RDVG+AL +P   +  L   I      
Sbjct: 381  RREEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALGLPEDLIKALSSGIW----- 435

Query: 486  PVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              S      +++ R   L +P   RL   L ++Q+L G  RH   H  G V+    L  L
Sbjct: 436  --SWSETVGENQVRALGL-NPEDRRLALTLRLAQQLMGAPRHLGQHPGGFVLTHDRLDHL 492

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
            VP+     +D  V +++   +E   ++K D L L  LT + K+   + +     ++L+ I
Sbjct: 493  VPIEPAAMADRQVIEWDKDDVEALKMMKVDVLALGMLTCMAKAFALIGEHKHQDLELATI 552

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY ++    TLG FQ+ES      L  M+P    D++  V++ RPGPI  D + 
Sbjct: 553  PQEDPATYAMIRRADTLGTFQIESRAQMSMLPRMKPKTFYDLVIQVAIVRPGPIQGDMVH 612

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+ GKEK+    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M  
Sbjct: 613  PYLRRREGKEKVEYPTPELEAVLHKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMAT 672

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    + + +++ +SG  +NG +   A   F  L  F  YGF +SHAA++A+I+Y + +
Sbjct: 673  FKFTGGVSRFQDKLVSGMIRNGYTMEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNY 732

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GD 832
            +K H+P  F AA +  +        +   DAR+  +++ P  +N    D  +        
Sbjct: 733  IKCHFPDVFCAALLNSQPMGFYAPAQIVIDARKHGVEVRPVCINRSRWDSTLEEVEGTER 792

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            + +   +  ++G+ T  A  I+ A AD+PF S++D   R     +    L  L  A A  
Sbjct: 793  HSVRLGMRLVRGLATADAARIVAARADEPFASVDDMWRR---SGVPVASLVELAEADAF- 848

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--------AHEKGTFSDKITLEKFS 944
                     L SL   ++ A W  +   ++   +F                  + L + +
Sbjct: 849  ---------LPSLRLERRDALWAIRALRDEPLPLFTAAAEREARAIAEQQEPDVELRQMT 899

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              ++ V    +   +G     HPL   +  L +  I    E++A   G  + +A +V+ +
Sbjct: 900  DGHNVV---EDYSHVGLTLREHPLRFLRADLTQRRIVTCAEAMAARDGKWLMVAGLVLVR 956

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG  + ++T  +         +P
Sbjct: 957  QRPGSAKG--VMFITIEDETGIANVVVWP 983


>gi|184155343|ref|YP_001843683.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            fermentum IFO 3956]
 gi|183226687|dbj|BAG27203.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            fermentum IFO 3956]
          Length = 1099

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/1030 (33%), Positives = 514/1030 (49%), Gaps = 67/1030 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L V S YSLLE  +    ++         A+ + D   L+ A+ F ++A  AG+ P
Sbjct: 2    GFVPLAVKSMYSLLEAPVRPAELVAVAKERGYQAVGLVDARVLYGAVNFVRRANQAGLHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG  L +   +                 + LL   A GYQ L  L +R       +   
Sbjct: 62   VIGVSLPLTFAEG-------------TLDVTLLAKGAVGYQNLTRLSTRAMTDRANQ--- 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + +  L+E G++ L+++         +      S+    +L       G  L       
Sbjct: 106  PLTIEDLRE-GSDDLVVIVAP------QLMLLGVSEQTYAQLGEVADYLGINL------- 151

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
              +       +  +A    LPL+A     +L+E+DY A  VL A+     +    +  + 
Sbjct: 152  -DFTAAERQDLQAVAERCGLPLIAFEPVEYLNEDDYFATQVLRAIKAGHTIEDPLKASQR 210

Query: 249  TPDHYLKNRSE--MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            T  H+L+   E       + L EA   TV +A RC        P+LP F       +   
Sbjct: 211  TGRHWLRPAEEVAAAYRAAGLAEAAAQTVAVAERCQVHFADQTPVLPAFPTPAGQGV--- 267

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     GL  R   G  A      +Y+ RL+ EL VI +M F  YFLIV D + +
Sbjct: 268  -ADYLRELCQRGLAKRKLAGDPA------EYQARLEHELTVIHQMGFDNYFLIVWDLMNF 320

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A ++ I  GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLNP+R  MPD D+D   +R
Sbjct: 321  AHQHQILTGPGRGSAAGSLVAYALAITDVDPLQYGLLFERFLNPERAQMPDIDLDLPDNR 380

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ Y+ + YGHERVAQIITFGSL  K  LRDV R   +P  QVD L ++I       
Sbjct: 381  REEVLNYLHHHYGHERVAQIITFGSLGTKQVLRDVSRVFNLPKYQVDSLSQVIDRVKGPH 440

Query: 487  VSLQAIADDSRFREARLADPS-VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +L  + + ++  +    D   V  LLE++ KLEGL RH S HAAG+V+   PL + VP+
Sbjct: 441  QTLADLLESAQPVQNLARDSKLVACLLEVAAKLEGLPRHDSIHAAGVVLAAEPLIKTVPL 500

Query: 546  YRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                    + VTQF    +E  GL+K D LGL+ LT ++ +L+ + Q     DL+ I  +
Sbjct: 501  QAGNEPGAMLVTQFEKDTVESLGLLKIDLLGLRNLTTVETALNLIHQHQPDFDLTHIALN 560

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  T  L     T GIFQ ESSG+RQ L  + PD  E+I+A+ +LYRPGP+DNI  +  R
Sbjct: 561  DRPTLALFDRGQTSGIFQFESSGIRQTLVNLHPDNFEEIVAVNALYRPGPMDNINHFIAR 620

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K G+E +      + P+L  T G+++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    
Sbjct: 621  KKGQEAVNLPAKELAPILAPTYGILVYQEQVMQVAAVMGGFSLGEADLLRRAMSKKKLAT 680

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M   KE F++GA+K G    +A  +F  + +FA+YGFN+SHA AY+ ++++ A++K H+P
Sbjct: 681  MASMKEAFLAGANKRGYPNAVAEQVFAYIDQFANYGFNRSHAVAYSKMAFEMAYLKVHFP 740

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EFLAA M     +  K+  +  +A+Q  I    P++N       + D  ++  L  IKG
Sbjct: 741  AEFLAALMETNP-DTSKVWAYFSEAKQLGITTHGPAINQSQERVSLVDQELWLGLDMIKG 799

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     R I+E      P+  L D  +R+D+K     +   L+ AGALD  GY+R ++ +
Sbjct: 800  LRRDFIRAIIEERNQHGPYQDLPDLVNRLDAKWHKEDLFVPLIDAGALDHLGYNRAEMAE 859

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L  I + A++                         + + +    +VR   E  VLG Y 
Sbjct: 860  GLKAILEGAEYA---------------GLGLGMAPVVAQRNEYPLAVRLAREHAVLGTYL 904

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSE 1022
            SGHP+  Y+ +  K+ +    +         +RL  MV   ++  T++    + ++T S+
Sbjct: 905  SGHPVSQYQDLRTKLKLPTVAQL---RPKQRVRLVLMVTRMRKVTTKREHKPMAFLTASD 961

Query: 1023 PAKEYEANFF 1032
                 E   F
Sbjct: 962  ETGAVEVTIF 971


>gi|111221614|ref|YP_712408.1| error-prone DNA polymerase [Frankia alni ACN14a]
 gi|111149146|emb|CAJ60829.1| putative DNA polymerase III (ALPHA CHAIN) DNAE2 (DNA
            NUCLEOTIDYLTRANSFERASE) [Frankia alni ACN14a]
          Length = 1106

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/1032 (28%), Positives = 483/1032 (46%), Gaps = 44/1032 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS++S L+GA    +++++       A+A+TD + L+  + F++ A   G++ 
Sbjct: 56   PYAELHCHSAFSFLDGASQPEDLVEEAVRLGLSALALTDHDGLYGVVRFAEAAREVGLRT 115

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + G ++ +  +       +     P    +++L    EGY+RL  L+S  +L    K  +
Sbjct: 116  VFGAEISLGAR-----AARAGETDPDGDHLLVLARDPEGYRRLARLLSDAHLAGGEKGRL 170

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
                            +LTG   G + RA   +    A   L    +LF  + + V L  
Sbjct: 171  VAEPEACARAAGGHWQVLTGCRKGTVPRALARSGPAAAGAALAELAELFGRENVAVELAD 230

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRP 246
            H    D  R   + +LA T  LPLVAT N  + +         + AV    ++       
Sbjct: 231  HAHPLDSARNDALAELARTARLPLVATGNVHYAAPGAARLAAAMAAVRARRSLAEMDGWL 290

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  +L++ +EM   F+  P A+E    I   C+F L + AP LP F           
Sbjct: 291  PAAGTAHLRSGAEMAQRFARFPTAVEQAARIGAECAFDLHLVAPRLPDFPVPPG----HT 346

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E + LR   + G   R       +   A D   +L  EL +I ++ F GYFLIV D +++
Sbjct: 347  EASWLRLLTMQGAARRYGPAGQERIAGAYD---QLAHELGLIEQLGFPGYFLIVHDIVEF 403

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             +++ I +  GRGS A S   YAL IT +D + F LLFERFL P+R   PD D+D    R
Sbjct: 404  CRRHRI-LCQGRGSAANSAVCYALGITGVDAVSFGLLFERFLAPERDGPPDIDLDIESGR 462

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+YV  +YG +R AQ+    + + ++A+RDV RAL     Q D   + +       
Sbjct: 463  REEVIQYVYRRYGRDRAAQVANVITYRPRSAVRDVARALGFSAGQQDAWSRQLDR----- 517

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             SL A                   + +++ +L G  RH   H+ G+VI DRP+ ++VP+ 
Sbjct: 518  WSLPAAGPPPSGDGGGPEHDIPPEVTQLADRLLGFPRHLGIHSGGMVICDRPVGEVVPVE 577

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                    V Q++      AGL+KFD LGL  L++L K+ D +    G  +DLSLIP +D
Sbjct: 578  WARMPGRTVIQWDKDDCAAAGLVKFDLLGLGMLSMLHKAFDLIRGHHGRDLDLSLIPPED 637

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
               Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI       Y  
Sbjct: 638  PAVYDMLCAADSIGVFQVESRAQMATLPRLRPRRFYDLVVEVALIRPGPIQGGSVHPYIR 697

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R+NG E++   HPL+   L +T GV ++QEQ+MQ+A  ++G+S +EAD LRRAM  K+  
Sbjct: 698  RRNGAEEVTYPHPLLRRSLAKTLGVPLFQEQLMQMAIDIAGFSAAEADELRRAMGSKRSA 757

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + +++ +ER  +G + +GI+  +A ++F  L+ FA++GF +SH+ ++A + Y ++W+K +
Sbjct: 758  DRIERLRERLYTGMAASGITGALADDLFTKLSAFANFGFPESHSVSFAFLVYASSWIKLY 817

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLA 840
            YP  F AA +  +       +    DAR+  ++++ P VN   V   +     R+   L+
Sbjct: 818  YPAAFCAALLNAQPMGFYSPQSLVADARRHGVEVLRPDVNASAVGASLVGAQPRVRLGLS 877

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             ++ VG + AR I+E   A  P+  + D   RV    L+   +E+L  AGA  CFG +R 
Sbjct: 878  GVRRVGESLARRIVETRVAGGPYAGMADLVRRV---GLSVDQVEALATAGAFACFGVARR 934

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            + L +             +R +     F  +    +    L   +    SV    +    
Sbjct: 935  EALWAAG----AVAQARPDRLDGMV--FGADVAAVAPY--LPGMTGVEESV---ADLWAT 983

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G    G+P    +  L   G+           G  + +A +V  +Q+  T  G+   +V 
Sbjct: 984  GITTEGYPTRFLRERLAAQGVTAAAGLRDAEAGRRVLVAGIVTHRQRPATAGGTT--FVN 1041

Query: 1020 FSEPAKEYEANF 1031
              +         
Sbjct: 1042 LEDETGLVNVIC 1053


>gi|227889857|ref|ZP_04007662.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849721|gb|EEJ59807.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 1038

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/1028 (32%), Positives = 529/1028 (51%), Gaps = 45/1028 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQ  SS++LLE    + N+ +        AIA+TD N  +  ++F + A   GI+P++
Sbjct: 4    VSLQNLSSFTLLESPTKVKNLAENAKKKGYSAIALTDINITYGLVDFYKAAKDTGIKPLL 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVR 130
            G Q          +   G         ++++    +GY+ ++ L S + LL + G++   
Sbjct: 64   GMQ----------LRINGLIDEANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENV 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR--LYVNLQR 188
            +    L++     LI++T  +     +    N+ ++    L   +        +Y+ +  
Sbjct: 114  LTFEDLKKYLG-HLILITPSNLHSELKMLQTNNPKMGANYLRKLQDSLPSSSSMYLGVYA 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
              G   Y    +  LA    LPL A  +  +L+  +      L A+  +T +   ++  +
Sbjct: 173  DSGQQEYIN-YISSLATQFSLPLTAVEDGQYLNRNEQFLRRTLQAIKTNTHLENIEQLAK 231

Query: 248  VTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                HYLKN  E+   +   D+ +ALEN  +I + C+  ++   P LP+F + +      
Sbjct: 232  QAGSHYLKNSEELQVSYRKFDIEDALENAEKIGKICTAEIKFQDPQLPKFKQNKFP---- 287

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L   A  GL  R      A+      Y++RLD+EL VI  M F  YFLIV D + 
Sbjct: 288  TSKEYLHALAQEGLAKRFNNQIPAQ------YQKRLDYELQVINEMGFDDYFLIVWDVMN 341

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A   +I  GPGRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D+D   +
Sbjct: 342  FAHSVHITTGPGRGSAAGSLVSYALRITEVDPIEYNLLFERFLNPARQQMPDIDLDIPDN 401

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDE+I+Y+  KYG    AQI+TFG+L AK  L+DV R   +   +  R    IP+    
Sbjct: 402  RRDEIIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHSKGK 461

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                +A       +     +     L   ++ LE L RH S HAAG+VI D  L+++V +
Sbjct: 462  ITLAEAYQKSKELQLLVNTNELSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVGL 521

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                   +PVTQ     +E  GL+K DFLGL+ LT+L   +  L   G+ +D + IP DD
Sbjct: 522  QAGPL-GIPVTQQTKFNVESLGLLKIDFLGLRNLTILGNIVAALRADGIDIDPNQIPLDD 580

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             ET  L     T  +FQ ES G+++ LE + PD  EDI+A+ +LYRPGPI+NI  + NRK
Sbjct: 581  QETLALFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPINNIDHFINRK 640

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKE++    P +  +L  T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK  E +
Sbjct: 641  HGKERVQYPDPSLKKILGTTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNAEVI 700

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             +++ +FI GA K G  K  A  +++ +A+FA+YGFN+SHA AY+ I++  A+ K HYP 
Sbjct: 701  QRERAKFIEGAIKLGRKKETAEKVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYPG 760

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  A +   M N  KI ++   A++  I+I+PP +     DF + + +I   L AI+G+
Sbjct: 761  AFYLALLNSNMGNRNKIAQYLMQAQEAGIKILPPDIENSKADFSLENGKILVGLKAIRGL 820

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
             +   + I+E    +P  S+ DF  ++D+  L+   +E+L+ AG  D    +R +LL+  
Sbjct: 821  RSDLLKQILEI--KRPIKSMTDFLWKIDNNLLSAGAVENLIKAGTFDRLAPNRNELLKIN 878

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             ++ +  +    N      ++F     T   K+  EK     ++ +   E   +GF    
Sbjct: 879  KDLVESVKMAGSN-----LSLF----ETLEPKVEEEKMP--TAAEKSAMEVEAMGFSTGI 927

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            +P+   +   RK   K  +   +  +G  +     ++  +   T+KG  + +  FS+ + 
Sbjct: 928  NPIIAVQKYARKFNAKRLQVFESNEQGIAV---GKLMKVKPITTKKGDNMAFAVFSDTSG 984

Query: 1026 EYEANFFP 1033
            E +   FP
Sbjct: 985  ERDFTIFP 992


>gi|257898944|ref|ZP_05678597.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
 gi|257836856|gb|EEV61930.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
          Length = 1103

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/1032 (31%), Positives = 527/1032 (51%), Gaps = 64/1032 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     GIQPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++                 ++       GYQ+L++L SR  + +       
Sbjct: 63   IGLHLSYTYEE-------------KNYGLLAYAKDETGYQQLMKLSSRKMIQE------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
                 L ++     ++    ++  +  A  FN  +          + +F    Y+ L  +
Sbjct: 103  --KMALDDMIETDHLVFVVPANHSVSEA--FNKEEHFFSHWQFLLENVFAKDFYIGLSEN 158

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD--RPR 247
               D+  E    Q       PL A +    L +ED  A +V+  +   + +  +    P 
Sbjct: 159  TP-DQLPEW--YQYVTKENYPLCALHPIASLQQEDLFALEVMKHIKEGSQMPLESLSAPL 215

Query: 248  VTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + + YL +  EM+  F +  L +A+     +A   SF  Q H  +LP +   +     K
Sbjct: 216  PSANGYLLSEQEMIKRFEEAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPQG----K 271

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +    LR    + +E R+         + ++YR+RLD+EL+VI +M F  YFLIV D + 
Sbjct: 272  QAGEYLRELCYSQVEHRIVD-------YTKEYRERLDYELSVIHQMGFDDYFLIVWDVMA 324

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D   +
Sbjct: 325  FAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPDN 384

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN    
Sbjct: 385  RREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKI 444

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++ QA     +  E   A      L + +  LEGL RH STHAAG+VI DR L +LVP+
Sbjct: 445  TLT-QAYKTSRQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDRNLLELVPL 503

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
             R       +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  IP +
Sbjct: 504  QRGSDEAF-LTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGQEIRLKEIPLN 562

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  R
Sbjct: 563  DAKTLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNIDTFIAR 622

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+ 
Sbjct: 623  KKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKDV 682

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++K  F+SGA + G S+  AV ++E + KFA+YGFN+SHA AY+ + +Q A++K H+P
Sbjct: 683  LDEEKSHFVSGALQQGYSEKTAVTVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHP 742

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIK 843
              F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AIK
Sbjct: 743  GAFFTSLMNSVRHNTTKLKEYIAEARKNKLKLSSPSINQSNYSFELVNKEEIRFGLTAIK 802

Query: 844  GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            G+       ++     + PF S++ F  R+D + L   +L+SL   G  D    +R QL+
Sbjct: 803  GIRRDFVEDVLNERKQNGPFKSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQLM 862

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              L+   +   +     +    ++           +  E+ +      R + E+  LG Y
Sbjct: 863  LDLEGKIQNIVY-----SGGSLDLLGIMA------LKEEEVADYTLEERLKLEEEYLGVY 911

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             SGHP + +     ++ +    + +  I     + L  M+   ++ +T+KG  + +V  +
Sbjct: 912  LSGHPAEGF----DRLRLAKQVQLITDIVPNQPVNLLLMIKEVREIRTKKGELMAFVEGT 967

Query: 1022 EPAKEYEANFFP 1033
            + + E     FP
Sbjct: 968  DSSGEISVTVFP 979


>gi|227515187|ref|ZP_03945236.1| possible DNA-directed DNA polymerase [Lactobacillus fermentum ATCC
            14931]
 gi|227086519|gb|EEI21831.1| possible DNA-directed DNA polymerase [Lactobacillus fermentum ATCC
            14931]
          Length = 1099

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/1030 (33%), Positives = 516/1030 (50%), Gaps = 67/1030 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L V S YSLLE  +    ++         A+ + D   L+ A+ F ++A  AG+ P
Sbjct: 2    GFVPLAVKSMYSLLEAPVRPAELVAVAKERGYQAVGLVDARVLYGAVNFVRRANQAGLHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG  L +   +                 + LL   A GYQ L  L +R       +   
Sbjct: 62   VIGVSLPLTFAEG-------------TLDVTLLAKGAVGYQNLTRLSTRAMTDRANQ--- 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + +  L+E+ ++ L+++         +      S+    +L       G  L       
Sbjct: 106  PLTIEDLREV-SDDLVVIVAP------QLMLLGVSEQTYAQLGEVADYLGINL------- 151

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
              +       +  +A    LPL+A     +L+E+DY A  VL A+     +    +  + 
Sbjct: 152  -DFTAAERQDLQAVAERCGLPLIAFEPVEYLNEDDYFATQVLRAIKAGHTIEDPLKASQR 210

Query: 249  TPDHYLKNRSE--MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            T  H+L+   E       + L EA   TV +A RC        P+LP F       +   
Sbjct: 211  TGRHWLRPAEEVAAAYRAAGLAEAAAQTVAVAERCQVHFADQTPVLPAFPTPAGQGV--- 267

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     GL  R   G  A      +Y+ RL+ EL VI +M F  YFLIV D + +
Sbjct: 268  -ADYLRELCQRGLAKRKLAGDPA------EYQARLEHELTVIHQMGFDNYFLIVWDLMNF 320

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A ++ I  GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLNP+R  MPD D+D   +R
Sbjct: 321  AHQHQILTGPGRGSAAGSLVAYALAITDVDPLQYGLLFERFLNPERAQMPDIDLDLPDNR 380

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ Y+ + YGHERVAQIITFGSL  K  LRDV R   +P  QVD L ++I       
Sbjct: 381  REEVLNYLHHHYGHERVAQIITFGSLGTKQVLRDVSRVFNLPKYQVDSLSQVIDRVKGPH 440

Query: 487  VSLQAIADDSRFREARLADPS-VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +L  + + ++  +    D   V  LLE++ KLEGL RH S HAAG+V+   PL + VP+
Sbjct: 441  QTLADLLESAQPVQNLARDSKLVACLLEVAAKLEGLPRHDSIHAAGVVLAAEPLIKTVPL 500

Query: 546  YRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                    + VTQF    +E  GL+K D LGL+ LT ++ +L+ + Q     DL+ I  +
Sbjct: 501  QAGNEPGAMLVTQFEKDTVESLGLLKIDLLGLRNLTTVETALNLIHQHQPDFDLTHIALN 560

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  T  L     T GIFQ ESSG+RQ L  + PD  E+I+A+ +LYRPGP+DNI  +  R
Sbjct: 561  DRPTLALFDRGQTSGIFQFESSGIRQTLVNLHPDNFEEIVAVNALYRPGPMDNINHFIAR 620

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K G+E +      + P+L  T G+++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    
Sbjct: 621  KKGQEAVNLPAKELAPILAPTYGILVYQEQVMQVAAVMGGFSLGEADLLRRAMSKKKLAT 680

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M   KE F++GA+K G S  +A  +F  + +FA+YGFN+SHA AY+ ++++ A++K H+P
Sbjct: 681  MASMKEAFLAGANKRGYSNAVAEQVFAYIDQFANYGFNRSHAVAYSKMAFEMAYLKVHFP 740

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EFLAA M  +  +  K+  +  +A+Q  I    P++N       + D  ++  L  IKG
Sbjct: 741  AEFLAALMETDP-DTSKVWAYFSEAKQLGITTHGPAINQSQERVSLVDQELWLGLDMIKG 799

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     R I+E      P+  L D  +R+D+K     +   L+ AGALD  GY+R ++ +
Sbjct: 800  LRRDFIRAIIEERNQHGPYQDLPDLVNRLDAKWHKEALFVPLIDAGALDHLGYNRAEMAE 859

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L  I + A++                         + + +    +VR   E  VLG Y 
Sbjct: 860  GLKAILEGAEYA---------------GLGLGMAPVVAQRNEYPLAVRLAREHAVLGTYL 904

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSE 1022
            SGHP+  Y+ +  K+ +    +         +RL  MV   ++  T++    + ++T S+
Sbjct: 905  SGHPVSQYQDLRTKLKLPTVAQL---RPNQRVRLVLMVTRMRKVTTKREHKPMAFLTASD 961

Query: 1023 PAKEYEANFF 1032
                 E   F
Sbjct: 962  ETGAVEVTIF 971


>gi|294339290|emb|CAZ87646.1| Error-prone DNA polymerase [Thiomonas sp. 3As]
          Length = 1037

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/1038 (26%), Positives = 471/1038 (45%), Gaps = 66/1038 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++  P +V L   S++S L GA     ++++        +A+TD  +L   +     A A
Sbjct: 1    MDPLPDYVELHCRSNFSFLTGASHPEELVERAQELHYAGLAVTDECSLAGIVRAHGAAKA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+  ++G Q  ++  +  +             ++V+L     GY  L E ++R+     
Sbjct: 61   AGLPLLVGAQFAVEGDEKTRTP---------PFTLVVLACNLNGYGNLCEFITRLRRASP 111

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K S R+    +        ++L   S           + +   +        F  R+++
Sbjct: 112  -KGSYRLDRQSITGEALADCVVLAVPS--------RQATDEQLLELGAWLLARFTGRVWL 162

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             ++ HR  D  R   ++  LA    +PLVA  +            D L A+     +++ 
Sbjct: 163  AVELHRRLDDERWLERLQDLAEATAIPLVAAGDVHMHRRSRKPLQDTLTAIRLGLPIAEC 222

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                +   + +L++R  +    S  PE L  T+ +A RC F L       P    KE   
Sbjct: 223  GHALQPNAERHLRSRLRLA--LSYPPELLAETLRVAARCRFSLDELRYRYP----KEVIP 276

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +  +  LR +   G   R   G  A+       +  L+ EL +IA + ++ YFL V D
Sbjct: 277  AGETADGYLRRRVYEGAGRRWPDGLHAR------VQDLLEHELALIAELGYAHYFLTVDD 330

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             + +A+  +I +  GRGS A S   YAL IT++DP +  +LFERF++ +R   PD D+DF
Sbjct: 331  IVAFARSRHI-LCQGRGSAANSAVCYALGITEVDPEQQQVLFERFISKERNEPPDIDVDF 389

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+EVI+Y+  KYG +R A        + K+ALRDVG+AL      V+RL + +   
Sbjct: 390  EHERREEVIQYLYAKYGRDRAALTAAVIRYRPKSALRDVGKALGFDLETVERLARNVQWW 449

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                V+ + + +     EA      V + + + ++L G  RH S H  G V+ + PLS+L
Sbjct: 450  DGREVARERLEEVGLDPEAL----GVQQWMALVRQLLGFPRHLSQHTGGFVLTEGPLSRL 505

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+      +  V +++   ++ AGL+K D L L  LT ++K+LD + Q RG    +  I
Sbjct: 506  VPIENASMPERTVIEWDKDDLDAAGLLKVDILALGMLTAIRKALDAIGQSRGQVFAMQDI 565

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV-- 659
            P +D +TY +L    ++G+FQ+ES   +  L  +QP C  D++   ++ RPGPI   +  
Sbjct: 566  PREDPQTYDMLCQADSVGVFQVESRAQQGMLPRLQPRCFYDLVIETAIVRPGPIQGGMVH 625

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y NR+ GKE +V     ++ +L+ T GV ++QEQVMQIA + +G+S  EAD LRRAM  
Sbjct: 626  PYLNRRQGKETVVYPSKDLESVLQRTLGVPVFQEQVMQIAMVAAGFSAGEADGLRRAMAA 685

Query: 720  KIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
              +   ++K ++R ISG ++ G     A +I+E +  F++YGF +SHAA++A++ Y +AW
Sbjct: 686  WRRTGSLEKYRDRLISGMAERGYPPDFAQSIYEQVQGFSEYGFPESHAASFALLVYASAW 745

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----DNR 834
            +K H+P EFL A +  +        +  QDA++  + + P  V     D  +        
Sbjct: 746  IKRHHPAEFLMALLNSQPMGFYTPSQLVQDAKRHGVTVRPVDVLHSDWDCTLEEGVPYPT 805

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +   L  +KG+G      I  A    P    ED   R        R L +   A AL   
Sbjct: 806  VRLGLRLVKGLGREVGWRIANARLHSPPVDAEDLAKRAQLDTPAMRQLAA---ADALRSL 862

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
               R Q +              +    +       +     D + L         V    
Sbjct: 863  SGHRRQQVW-------------EATAVERLPALLDDAAPQEDWLELPAPPEGEDIV---F 906

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +    G     HPL + +P+L K  ++   E      G  +R   +V  +QQ +T KG+ 
Sbjct: 907  DYATTGLSLRRHPLALLRPLLAKRRLQTAAELAQAPDGRIVRACGIVTLRQQPETAKGTT 966

Query: 1015 IGWVTFSEPAKEYEANFF 1032
              +V+  +     +   +
Sbjct: 967  --FVSLEDETGTVQVICW 982


>gi|226305466|ref|YP_002765426.1| error-prone DNA polymerase [Rhodococcus erythropolis PR4]
 gi|226184583|dbj|BAH32687.1| error-prone DNA polymerase [Rhodococcus erythropolis PR4]
          Length = 1095

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1034 (27%), Positives = 470/1034 (45%), Gaps = 63/1034 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS++S L+GA     ++++       AIA+TD +  +  + F++ A   G++ 
Sbjct: 60   PYAELHAHSAFSFLDGASPPEELVEEAVRLGLEAIAVTDHDGFYGVVRFAEAAREWGMRT 119

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + G       + +L    +  T  P    +++L    EGY+RL   ++  +L    K  +
Sbjct: 120  VFGA------ELSLDSVPRTGTADPGGTHLLVLARGQEGYRRLSREIAAAHLAGGEKGKL 173

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            +     L E       +LTG   G + +A      + A + L    + F  +R+ V L  
Sbjct: 174  QYNYDVLTEAAGGHWQILTGCRKGHVRQALTSGGREAAAEALQDLVERFGAERVSVELTH 233

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRP 246
            H    D  R + + +LA    L  VAT  + F +         + AV     + +     
Sbjct: 234  HGLAEDDERNAVLAELARERGLRTVATTAAHFAAPPRRRLAMAMAAVRARQSLDEAAGWL 293

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T   +L++ +EM ++FS  PEA+    ++ R C+F L++ AP LP F           
Sbjct: 294  APTGGAHLRSGAEMATLFSLYPEAVSGAADLGRECAFDLKLIAPKLPPFDVPAG----HT 349

Query: 307  EENELRNKAVAGLEVRL-AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            E + LR   + G   R        K Y      ++L+ EL +I  + F GYFL+V D + 
Sbjct: 350  EASWLRELTMVGALERYGPPEGAPKAY------KQLEHELAIIEGLNFPGYFLVVHDIVS 403

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            + K N+I +  GRGS A S   YA+ IT++DP+R  LLFERFL P+R   PD D+D   D
Sbjct: 404  FCKNNDI-LCQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLAPERDGPPDIDVDIESD 462

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+E I++V  KYG    AQ+    + + K+++RD+ RAL     Q D   K +      
Sbjct: 463  RREEAIQHVYAKYGRTYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSKQVGRWGG- 521

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +   A  D  R             +LE++ ++EG  RH   H+ G+VI DRP++ + P+
Sbjct: 522  -IDKNADTDIPRP------------VLELAAQIEGYPRHLGIHSGGMVICDRPIADVCPV 568

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                 ++  V Q++      AGL+KFD LGL  L+ L   +D +A+   + VDL+ +   
Sbjct: 569  EWARMANRSVLQWDKDDCAAAGLVKFDLLGLGMLSALHYMMDLVAEHKGITVDLAQLDLS 628

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYN 662
            +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI       Y 
Sbjct: 629  ETAVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVHPYI 688

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKI 721
             R+N  E +   HP ++  L+ T GV ++QEQ+MQ+A  ++G++ SEAD LRRAM  K+ 
Sbjct: 689  RRRNKLEPVSYDHPSLEKALERTLGVPLFQEQLMQMAVDVAGFTPSEADQLRRAMGSKRS 748

Query: 722  KEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             E+M++ + R   G    +GI   +A  I+E L  FA++GF +SH+ ++A + + ++W K
Sbjct: 749  TEKMEQLRARLYQGMRDLHGIGDEVADRIYEKLYAFANFGFPESHSQSFAALVFYSSWFK 808

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIYYS 838
             H+P  F A  +  +       +    DAR+  +Q+    +N       V  G   +   
Sbjct: 809  LHHPAAFCAGLLRAQPMGFYSPQSLVADARRHGVQVHGADINVSLAHATVEAGGFEVRLG 868

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L  ++ +G   A  I+E      PF S  D   RV+         ESL  AGAL  FG S
Sbjct: 869  LGEVRNIGDALAEKIVEQRDLGGPFTSFLDLTGRVELT---TAQAESLATAGALASFGIS 925

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R + L         A      R ++   I A         +T       +       +  
Sbjct: 926  RREALW-------AAGAAAGERPDRLPGIGAS--------VTAPTLPGMSDVELAAADVW 970

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G     +P    +P L  +G+      +    G+ + +   V  +Q+  T  G  + +
Sbjct: 971  ATGVSPDTYPTQFLRPQLDALGVVPASRLLDIPDGDRVLVGGAVTHRQRPATAAG--VTF 1028

Query: 1018 VTFSEPAKEYEANF 1031
            +   +         
Sbjct: 1029 INLEDETGMVNVVC 1042


>gi|28869981|ref|NP_792600.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato
            str. DC3000]
 gi|71151834|sp|Q881T7|DNAE2_PSESM RecName: Full=Error-prone DNA polymerase
 gi|28853226|gb|AAO56295.1| DNA polymerase III, alpha subunit, putative [Pseudomonas syringae pv.
            tomato str. DC3000]
          Length = 1031

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/1039 (26%), Positives = 458/1039 (44%), Gaps = 84/1039 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + D+       A+AITD   L   +   Q +   G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFDRALRHGYAALAITDECTLAGIVRAWQASKDTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++                  P IVLLV    GYQ L  L++      + K   R
Sbjct: 65   VGSEMHLENG----------------PKIVLLVENLTGYQALCTLITVARRRAK-KGEYR 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L     +    L +      G         +           ++ F +RL++ ++ HR
Sbjct: 108  LLLEDFDHLPGGLLAIWLADIEGDAQACLAQGN---------WLRERFAERLWLGVELHR 158

Query: 191  G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
            G  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V++       
Sbjct: 159  GADDEQRLADLLALAQSLAIPAVASGDVHMHARGRRALQDTITAIRHHTTVAEAGHLLFA 218

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + +L++   +   + D    L  ++ IARRC+F         P  +  +     +   
Sbjct: 219  NGERHLRSLDALAEHYPDW--LLAESLRIARRCTFTFDQLQYEYPHELVPKG----QTST 272

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR     G+  R  +G           R +++ EL +I   KF  YFL V D +++A+
Sbjct: 273  SWLRELTERGIRRRWPRGLSVAA------RAQVEKELALITEKKFDSYFLTVHDIVEFAR 326

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  DRR+
Sbjct: 327  SQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERDEPPDIDVDFEHDRRE 385

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  +YG  R A      +     ALRDV + L +P  Q++ L             
Sbjct: 386  EVIQYIFRRYGRGRAALTAVASTYHGSGALRDVAKVLGLPPDQINALADAFSRWS----- 440

Query: 489  LQAIADDSRFRE--ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              ++    R RE       P + R+L ++ +L G  RH S H  G VI + PL  LVP+ 
Sbjct: 441  -DSLPSPERLREYGFDAETPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLDTLVPVE 499

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                ++  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P DD
Sbjct: 500  NAAMAERTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKQWTLASLPGDD 559

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
              TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  Y  
Sbjct: 560  RPTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLR 619

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+N +E I    P +  + + T GV ++QEQVM++A + + Y+  EAD LRRAM   K  
Sbjct: 620  RRNKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADQLRRAMAAWKRH 678

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +D  +ER  +G   NG     A  IFE +  F  YGF +SHAA++A+++Y + W+K H
Sbjct: 679  GGLDPHRERLRTGMLANGYDADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCH 738

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD---------N 833
             P  F  A +           +  QDAR+ +I+I P  V     D  +            
Sbjct: 739  EPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSHWDCTLEPLDHPDSTRNL 798

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I   L  ++      A  I  A + +PF    D   R     L+ R  E+L  +GAL  
Sbjct: 799  AIRLGLRMLRSFREEDALRIEAARSKRPFADATDLAQRA---GLDSRAAEALADSGALRG 855

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R +    +  +                 +F  +  +   ++TL   +V   +    
Sbjct: 856  LIGHRHRARWEVAGV------------EAQRPLF-DDVTSEEVQVTLPLPTV---AEDLV 899

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +   LG     HPL + +  L     +  ++ ++      + +A +V+ +Q+  T  G 
Sbjct: 900  ADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENNRTLSVAGLVIGRQRPGTASG- 958

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + +VT  +         +
Sbjct: 959  -VTFVTLEDEFGMVNVVVW 976


>gi|51893023|ref|YP_075714.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
            14863]
 gi|71151840|sp|Q67N73|DNAE2_SYMTH RecName: Full=Error-prone DNA polymerase
 gi|51856712|dbj|BAD40870.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
            14863]
          Length = 1085

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/1075 (28%), Positives = 505/1075 (46%), Gaps = 87/1075 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS +S L+GA  L++++ + A    PA+A+TD NN+  A+ F +KA  AGIQP
Sbjct: 2    SFVHLHVHSPFSFLDGASRLDDLIAEAALHGMPALALTDHNNVSGAVRFQRKAQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G +L ++                    + LL +  +GY  L  L++  +L  + + + 
Sbjct: 62   IQGAELTLEGG----------------YHLTLLATGPKGYANLNRLITAAHLGQEPRATP 105

Query: 130  --------------RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
                            C        T+GLI L+G   G I           AE     + 
Sbjct: 106  GAMFALAPGHDRLQPACPLSALSHDTDGLIALSGCRRGEIPSLILRGRLAEAEAAARRYA 165

Query: 176  KLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
              F  R Y+ L   R   ++     +  L     LPLV T+N    + E++  HD+L  V
Sbjct: 166  AWFPGRFYLELHDERLPGEQALNRALRDLGEALGLPLVVTSNVHHRTREEFFVHDLLTCV 225

Query: 235  AHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
               T + Q      +    YLK    M+  F + PEA++NT+ IA RC  +L + A + P
Sbjct: 226  RTLTRIDQPHPERPLNDQRYLKPPEVMIERFREFPEAVKNTLAIAERCRPVLDLDARLHP 285

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             F   +           L +    G   R        G   +  R+RL+ EL +I R+ +
Sbjct: 286  EFQTPDG----SHPAAYLTHLVYDGAARRY-------GRITERIRRRLEHELTIITRLGY 334

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL+V D +++A++  I    GRGS A S  AY L ITD+D +   LLFERF++ +R 
Sbjct: 335  EDYFLLVWDVVRFARERGIRCA-GRGSAADSAVAYCLFITDVDAIERGLLFERFMSLERA 393

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD DIDF   RRDEV  YV  KYG + VA + T+ + QA++A+RD+G+A+    + +D
Sbjct: 394  QKPDIDIDFDARRRDEVAAYVYRKYGADHVASVCTYNTFQARSAVRDLGKAMGFQEADLD 453

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
             L K IP        L  +A     R++ +     ++L++ ++++    R   TH  G+V
Sbjct: 454  YLAKRIPWHAGADEILTVMARYPELRQSGIPWHKFEQLVQAAERVARFPRFIGTHLGGLV 513

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            I  RPL ++ P+    +  + V QF+ +++E  GL+K D L L+T T +  ++  +    
Sbjct: 514  ISRRPLLEVTPLQMAAKGQV-VCQFDKEYVEDLGLVKLDLLSLRTFTAVDDAVRAIGD-- 570

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              +D   IP  D  TY +L    ++G+FQLES   R     ++PD  EDI+A V++ RPG
Sbjct: 571  --IDYEQIPHGDAATYEMLGVGESIGVFQLESPAQRALQARLKPDRFEDIVASVAIIRPG 628

Query: 654  PIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PI   +   +  R++GKE++  +HP + P+L++T GV+++QEQV++IA  ++G++  EAD
Sbjct: 629  PIKGNMVEPFLARRHGKEEVTYLHPKLKPILEKTYGVVLFQEQVIEIATAVAGFTPGEAD 688

Query: 712  VLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRR M   + +E+M+     F   A+  G+   +A  IF  +  +A YGF ++HAAA+A
Sbjct: 689  QLRRVMTHARNREDMEAIGRLFRQKAAAAGVDPAVADTIFSYIQGYASYGFCEAHAAAFA 748

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
              +Y+TA++  HYP E+ AA M+ +      I     +AR+  + ++P  +N     F V
Sbjct: 749  NTAYKTAYLVRHYPAEYFAALMSAQPMGYYPINTLAVEARRRGVGLLPVDINRSEEAFTV 808

Query: 831  GDN-----------------------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
             +                         I   L A+KGVG   A  I+ A     F SL D
Sbjct: 809  EEWSREAWEAFWGMEPFAPEYPATGKAIRIGLRAVKGVGEPAAAAILAARDGGEFRSLAD 868

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
               R       R  LE+LV AGA D    +R   L  + ++ + A+ + + R      + 
Sbjct: 869  LVRRTGGAVP-RGPLEALVLAGAFDRLHSNRRAALWQVAHLLE-AERIRQERGAGQAGLL 926

Query: 928  AHEKGTFSDKITL----------EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
              +      +                +   ++ R+  E  + G     H +   +  L +
Sbjct: 927  DGDAPGLGAQAAEALEAASPQGTPAIADFGAAERYLKEYELTGLMVRTHFMRFVRERLAR 986

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             G    +E      G  +++A + V   +  TR G  + +++  +     +   F
Sbjct: 987  EGYLTAQEVRQRRAGELVKVAGLPVCPHRPPTRSGKIVVFLSLEDETGLIDLTIF 1041


>gi|295692868|ref|YP_003601478.1| DNA polymerase iii, alpha subunit [Lactobacillus crispatus ST1]
 gi|295030974|emb|CBL50453.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus ST1]
          Length = 1035

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/1024 (31%), Positives = 529/1024 (51%), Gaps = 44/1024 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL     +++++        P + + D N  +  + F + A  AGI+P++G 
Sbjct: 6    LQNISSFTLLSSPTKVSDLIKDAKEKGYPVVGLADVNVTYGLVNFYELAKKAGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
            Q          +   G         +++   T +GY  L+ L S + LL + G+    + 
Sbjct: 66   Q----------LRLNGLVDSTQKYDLLVFAKTNKGYHNLLRLSSAVNLLTENGQNDKVLT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L+ L +   + LI++       +  A    +  +    +   KKL  D LY+ +   +  
Sbjct: 116  LNELTKYLDDLLIIVPANLKSEL-MALHDTNQALGSDYVRQLKKLTSD-LYLGVYASKAS 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPD 251
              Y +  V  LA   EL LVA  +S +L   +      L A+A    +       +    
Sbjct: 174  IDYID-YVRGLAKQFELSLVAVEDSQYLRPREQFLQKTLRAIAKGDKLQDILPLAKQAGS 232

Query: 252  HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HYL +   ++  +   DL +A+ NT +IA++C+  +    P+LP++ + +        E 
Sbjct: 233  HYLDSAQNVLECYHQYDLDDAINNTWKIAQKCNAEVIFQKPVLPKYHQDKFP----TSEE 288

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR  A  GL+ R  Q +I       +Y++RL++EL VI +M F  YFLIV D I +  +
Sbjct: 289  YLRYLAQTGLQARFGQKSI-----PAEYQKRLNYELRVINQMGFDDYFLIVWDVINYCHR 343

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS  GS+ +Y+L IT++DP++++LLFERFLNP R  MPD D+D    +R+ 
Sbjct: 344  VKITTGPGRGSACGSLVSYSLRITEVDPIQYNLLFERFLNPARHEMPDIDLDIPDIQRNT 403

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG +  AQI+TFG++ AK  LRDVGR   +   ++ +    IP         
Sbjct: 404  VIKYMYQKYGMDHAAQILTFGTMAAKQVLRDVGRVFGLTGPEITKWTHAIPYSKDKMELK 463

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +A  +    R    A P    L + +  LEGL RH S HAAG+VI D  ++ +  +    
Sbjct: 464  KAYQESRELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDDSIAGISGLQAGP 523

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ   K++E  GL+K DFLGL+ LT+L   L  + Q+GVK+D + IP +D +T 
Sbjct: 524  F-GIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILALVRQQGVKLDPNTIPLNDPKTM 582

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  +FQ ES G+R  L  + PD  ED++A+ +LYRPGP+ NI  +  RKNG  
Sbjct: 583  ELFQQGKTDAVFQFESGGIRGVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVARKNGTA 642

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK +  +++++
Sbjct: 643  TVHYPDPSLKQILQSTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKNQNVIEQER 702

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI+G  K G  K +   ++  + +FA+YGFN+SHA AY  I++  A++K HYP  F  
Sbjct: 703  GKFIAGTVKKGHPKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFYT 762

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +        K + +   A++  ++I+PP +N   +D+ + D +I   L AIKG+    
Sbjct: 763  AMLNSSTSA--KAQSYSMQAQEAGVRILPPDINHSQLDYTLQDGKILVGLKAIKGLRLDF 820

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A+ I  A+  KP+ S  DF  R+D+K L    +E+L+ AGA D    +R +LL +  ++ 
Sbjct: 821  AKEI--AANTKPYKSFNDFLRRIDAKFLQVDAIEALIMAGAFDSIEDNRNELLLNCKDVI 878

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               Q   +N      ++             L+      ++ + E E++ LGF  +  PL 
Sbjct: 879  ANVQLTGQN-----MSL-----SEILGDAPLKPAEPPTAAQKAEMEEKALGFTTTTTPLI 928

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K   +   +      G ++     ++  +Q +T+ G  + + +F++ + E E 
Sbjct: 929  AVQKYAQKFNARPLNQFQLNDSGISV---GKLMKLKQIRTKNGKTMAFASFADTSSEQEI 985

Query: 1030 NFFP 1033
              FP
Sbjct: 986  IIFP 989


>gi|227879083|ref|ZP_03996972.1| possible DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256843072|ref|ZP_05548560.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256850276|ref|ZP_05555705.1| DNA polymerase III alpha-chain [Lactobacillus crispatus MV-1A-US]
 gi|262046332|ref|ZP_06019294.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US]
 gi|293381286|ref|ZP_06627289.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 214-1]
 gi|312977257|ref|ZP_07789005.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus CTV-05]
 gi|227861324|gb|EEJ68954.1| possible DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256614492|gb|EEU19693.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256712913|gb|EEU27905.1| DNA polymerase III alpha-chain [Lactobacillus crispatus MV-1A-US]
 gi|260573203|gb|EEX29761.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US]
 gi|290922102|gb|EFD99101.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 214-1]
 gi|310895688|gb|EFQ44754.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus CTV-05]
          Length = 1035

 Score =  821 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/1024 (31%), Positives = 529/1024 (51%), Gaps = 44/1024 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL     +++++        P + + D N  +  + F + A  AGI+P++G 
Sbjct: 6    LQNISSFTLLSSPTKVSDLIKDAKEKGYPVVGLADVNVTYGLVNFYELAKKAGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
            Q          +   G         +++   T +GY  L+ L S + LL + G+    + 
Sbjct: 66   Q----------LRLNGLVDSTQKYDLLVFAKTNKGYHNLLRLSSAVNLLTENGQNDKVLT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L+ L +   + LI++       +  A    +  +    +   KKL  D LY+ +   +  
Sbjct: 116  LNELTKYLDDLLIIVPANLKSEL-MALHDTNQALGSDYVRQLKKLTFD-LYLGVYASKAS 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPD 251
              Y +  V  LA   EL LVA  +S +L   +      L A+A    +       +    
Sbjct: 174  IDYID-YVRGLAKQFELSLVAVEDSQYLRPREQFLQKTLRAIAKGDKLQDILPLAKQAGS 232

Query: 252  HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HYL +   ++  +   DL +A+ NT +IA++C+  +    P+LP++ + +        E 
Sbjct: 233  HYLDSAQNVLERYHQYDLDDAINNTWKIAQKCNAEVIFQKPVLPKYHQDKFP----TSEE 288

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR  A  GL+ R  Q +I       +Y++RL++EL VI +M F  YFLIV D I +  +
Sbjct: 289  YLRYLAQTGLQARFGQKSI-----PAEYQKRLNYELRVINQMGFDDYFLIVWDVINYCHR 343

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS  GS+ +Y+L IT++DP++++LLFERFLNP R  MPD D+D    +R+ 
Sbjct: 344  VKITTGPGRGSACGSLVSYSLRITEVDPIQYNLLFERFLNPARHEMPDIDLDIPDIQRNT 403

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG +  AQI+TFG++ AK  LRDVGR   +   ++ +    IP         
Sbjct: 404  VIKYMYQKYGMDHAAQILTFGTMAAKQVLRDVGRVFGLTGPEITKWTHAIPYSKDKMGLK 463

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +A  +    R    A P    L + +  LEGL RH S HAAG+VI D  ++ +  +    
Sbjct: 464  KAYQESRELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDDSIAGISGLQAGP 523

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ   K++E  GL+K DFLGL+ LT+L   L  + Q+GVK+D + IP +D +T 
Sbjct: 524  F-GIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILALVRQQGVKLDPNTIPLNDPKTM 582

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  +FQ ES G+R  L  + PD  ED++A+ +LYRPGP+ NI  +  RKNG  
Sbjct: 583  ELFQQGKTDAVFQFESGGIRGVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVARKNGTA 642

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK +  +++++
Sbjct: 643  TVHYPDPSLKQILQSTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKNQNVIEQER 702

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI+G  K G  K +   ++  + +FA+YGFN+SHA AY  I++  A++K HYP  F  
Sbjct: 703  GKFIAGTVKKGHPKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFYT 762

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +        K + +   A++  ++I+PP +N   +D+ + D +I   L AIKG+    
Sbjct: 763  AMLNSSTSA--KAQSYSMQAQEAGVRILPPDINHSQLDYTLQDGKILVGLKAIKGLRLDF 820

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A+ I  A+  KP+ S  DF  R+D+K L    +E+L+ AGA D    +R +LL +  ++ 
Sbjct: 821  AKEI--AANTKPYKSFNDFLRRIDAKFLQVDAIEALIMAGAFDSIEDNRNELLLNCKDVI 878

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               Q   +N      ++             L+      ++ + E E++ LGF  +  PL 
Sbjct: 879  ANVQLTGQN-----MSL-----SEILGDAPLKPAEPPTAAQKAEMEEKALGFTTTTTPLI 928

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K   +   +      G ++     ++  +Q +T+ G  + + +F++ + E E 
Sbjct: 929  AVQKYAQKFNARPLNQFQLNDSGISV---GKLMKLKQIRTKNGKTMAFASFADTSSEQEI 985

Query: 1030 NFFP 1033
              FP
Sbjct: 986  IIFP 989


>gi|254776764|ref|ZP_05218280.1| error-prone DNA polymerase [Mycobacterium avium subsp. avium ATCC
            25291]
          Length = 1093

 Score =  821 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1040 (26%), Positives = 479/1040 (46%), Gaps = 60/1040 (5%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +    S  +  L  HS++S L+G  +   ++++ A     A+A+TD + L+ A+ F++ A
Sbjct: 50   RAARSSVPYAELHAHSAFSFLDGVSTPEEMVEEAARLDLRALALTDHDGLYGAVRFAEAA 109

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                ++ + G       + +L  + + + P P  P +++L   AEGY+RL   ++  +L 
Sbjct: 110  AELDVRTVFGA------ELSLGPSARTEAPDPPGPHLLVLARGAEGYRRLSRQLAVAHLA 163

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDR 181
               K   R  L  L E       +LTG   G + +A        A + L      F   R
Sbjct: 164  GGEKGKPRYDLDALTEAAGGHWHILTGCRKGHVRQALSDGGPDAAARALADLVDRFGAAR 223

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TV 239
            + + L RH    D  R + +  LA    + +VAT  + F           + A+    ++
Sbjct: 224  VSIELTRHGQPLDDERNAALAALAPRFGVGVVATTGAHFAGPSRRRLAMAVGAIRARESL 283

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             S           +L++  EM  +F+  PEA+    E+  +C+F L + AP LP F   +
Sbjct: 284  DSAAGWLAPLGGSHLRSGEEMARLFAWCPEAVTAAAELGEQCAFGLALIAPRLPPFDVPD 343

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E++ LR   + G   R      A   +      +++ EL VIA+++F GYFL+
Sbjct: 344  G----HTEDSWLRQLTMTGARDRYGSPERAPRAY-----AQIEHELKVIAQLQFPGYFLV 394

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D  ++ ++NNI +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D
Sbjct: 395  VHDIARFCRENNI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDID 453

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +D   D+R++VI+YV ++YG +  AQ+    + + K A+RD+ RAL     Q D   K I
Sbjct: 454  MDIESDQREKVIQYVYDRYGRDYAAQVANVITYRGKIAVRDMARALGYSQGQQDAWSKQI 513

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +                  ++   +    ++++++ ++  L RH   H+ G+VI DRP+
Sbjct: 514  SSWSG-------------LADSPDVEGIPPQVIDLANQVRNLPRHLGIHSGGMVICDRPI 560

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            + + P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+   ++VDL
Sbjct: 561  ADVCPVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDL 620

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   
Sbjct: 621  SRLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGG 680

Query: 659  --VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
                Y  R+NG + ++  HP ++P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRA
Sbjct: 681  SVHPYIRRRNGVDPVLYDHPSMEPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRA 740

Query: 717  M-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            M  K+  E M + + RF  G    +G    +    +E L  FA++GF +SHA ++A + +
Sbjct: 741  MGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRTYEKLEAFANFGFPESHALSFASLVF 800

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             ++W K H+P  F AA +  +       +    DAR+  + +  P VN       + +  
Sbjct: 801  YSSWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHATLENAG 860

Query: 835  I--YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
                  L A++ +G   A  +++   A+ PF SL D  +R+     +    E+L  AGA 
Sbjct: 861  TEVRLGLGAVRHIGDDLAEKLVQERKANGPFASLLDLTARLHL---SVPQTEALATAGAF 917

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
             CFG SR           +         T + + +      +      +      +    
Sbjct: 918  GCFGMSRR----------EALWAAGAAATQRPDRLPGVGSSSH-----IPALPGMSELEL 962

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +    G     +P    +  L  MG+       +   G+ + +A  V  +Q+  T +
Sbjct: 963  AAADVWATGISPDSYPTQFLRDDLDAMGVVPAARLGSVPDGDRVLIAGAVTHRQRPGTAQ 1022

Query: 1012 GSRIGWVTFSEPAKEYEANF 1031
            G  + ++   +         
Sbjct: 1023 G--VTFLNLEDETGMVNVLC 1040


>gi|116687247|ref|YP_840493.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
 gi|116652962|gb|ABK13600.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
          Length = 1049

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/1037 (27%), Positives = 476/1037 (45%), Gaps = 63/1037 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AA + 
Sbjct: 10   PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAANMP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             II          + ++T    +P     ++       +GY  L E +S   +  + K +
Sbjct: 70   LII--------GSHFRLTAADGSPALAFTAL---AMNRDGYGNLCEFISLGRMRSK-KGT 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L+   T    +        I    F  + Q  + ++  F ++FGDR +V L  
Sbjct: 118  YRLAPLDLEHPETPYTHLRNLPDCIAILSPDFPANEQRLDAQVEWFARVFGDRAWVALTL 177

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H R  D      + ++A  H +P+VAT+  L          DVL  +     V++     
Sbjct: 178  HARAMDDIHRGVIERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGRPVTECGYEL 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  + +++     ALE TV +ARRC+F L       P  +     D    
Sbjct: 238  APNAERHLRSRLRLANLYP--AGALEETVRVARRCTFSLDDLKYEYPDELVPAGTD---- 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR +   G   R   G         D + +++ EL +IA M +  YFL V D +Q+
Sbjct: 292  PATYLREQTYIGARRRFPAGI------PVDVQAQIEHELQLIADMHYEAYFLTVYDIVQF 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I +  GRGS A S   Y L +T++DP R S+LFERF++ +R S PD D+DF   +
Sbjct: 346  AREQGI-LCQGRGSAANSAVCYCLGVTEVDPSRQSMLFERFISKERNSPPDIDVDFEHQK 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+ V++Y+  KYG +R A      + + ++ALR+ G+AL +  + V+R+ K      +  
Sbjct: 405  REIVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDPAIVERVAKQHHWFDSRA 464

Query: 487  VSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              LQ      RF EA L    P   +    + +L G  RH S H+ G VI    L++LVP
Sbjct: 465  DLLQ------RFAEAGLDPGAPLNQQWAGFAAQLLGYPRHLSQHSGGFVISRGKLTRLVP 518

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPF 603
            +      D  + Q++   IE  G++K D L L  L++++++LD +  +RG   +L  IP 
Sbjct: 519  VENAAMEDRSIIQWDKDDIEALGILKVDCLALGMLSMVRRALDMISEKRGETFELQDIPA 578

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661
            +D  TY +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGP+   +   +
Sbjct: 579  EDKATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQGGMVHPF 638

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R+ G E +      ++  L  T GV I+QEQVMQ+A L +G+S  EAD LRRAM   K
Sbjct: 639  LRRRQGLEPVTFPSESMEKALARTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWK 698

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K  ++   ER +SG  + G  +  A +IF  +  F +YGF +SHAA++A++ Y +AW++
Sbjct: 699  RKGGLEPYHERLVSGMLERGYDREFAESIFAQIKGFGEYGFPESHAASFALLVYSSAWLR 758

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI----Y 836
             H P  FLAA +  +        +  QDAR+  ++++P  VN    D  +          
Sbjct: 759  RHEPAVFLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSTIEGPTTSAPVR 818

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
               + ++G+    A  I  A A +PF  + D   R    + + +VL              
Sbjct: 819  LGFSLLRGMREDVAGRIELARAARPFVDVADLARRARLDRHDLQVL-------------- 864

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R   L+SL    + A            ++    +   +    L + S  +  V    + 
Sbjct: 865  ARANALRSLAGGNRRAALWLAAAAVPDRDLLRGTERDDAV-PALPQASEGHEIV---TDY 920

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            R +GF    HPL + +  L    ++  E+      G   R   +V  +Q+  T  G  + 
Sbjct: 921  RAMGFTLGRHPLALLRDRLALDRLQSAEQLATLRSGQLARACGLVTVRQRPGTANG--VL 978

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++T  +   +     +P
Sbjct: 979  FMTLEDETGQVNVILWP 995


>gi|289629057|ref|ZP_06462011.1| error-prone DNA polymerase [Pseudomonas syringae pv. aesculi str.
            NCPPB3681]
 gi|289649726|ref|ZP_06481069.1| error-prone DNA polymerase [Pseudomonas syringae pv. aesculi str.
            2250]
 gi|330867026|gb|EGH01735.1| error-prone DNA polymerase [Pseudomonas syringae pv. aesculi str.
            0893_23]
          Length = 1031

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1042 (26%), Positives = 465/1042 (44%), Gaps = 84/1042 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  +  L   S++S   GA S   + ++ +     A+AITD   L   +   Q + + G+
Sbjct: 2    TSEYAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASISTGL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
              IIG ++ I+                  P  VLLV +  GY+ L +L++        K 
Sbjct: 62   PLIIGSEMHIENG----------------PKAVLLVESQTGYEALCKLITVARRR-ARKG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+      E  ++GL+         I        +Q         ++ F +RL++ ++
Sbjct: 105  EYRLLREDF-EPSSDGLLA--------IWLPDIEGDAQACLAHGRWLRERFAERLWLGVE 155

Query: 188  RHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             HRG  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V++    
Sbjct: 156  LHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEAGHL 215

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +L+    +   + D    L  +V IARRC+F L+      P  +  +     +
Sbjct: 216  LFANGERHLRPLDALAEHYPDW--LLAESVRIARRCTFDLKQLKYEYPHELVPKG----Q 269

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     G   R   G           R +++ EL +I   KF  YFL V D ++
Sbjct: 270  TPTSWLRELTERGARKRWPNGLTPAT------RAQVEKELALITEKKFDSYFLTVHDIVE 323

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  D
Sbjct: 324  FARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERNEPPDIDVDFEHD 382

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L          
Sbjct: 383  RREEVIQYIFRRYGRGRAALTAVASTYHGSGAVRDVAKVLGLPPDQINALADAFSRWS-- 440

Query: 486  PVSLQAIADDSRFREARLAD--PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                 ++    R RE       P + R+L ++ +L G  RH S H  G VI + PL  LV
Sbjct: 441  ----DSLPSPERLREYGFDADMPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLV 496

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602
            P+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG    L+ +P
Sbjct: 497  PVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKLWTLADLP 556

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             DD +TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  
Sbjct: 557  GDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHP 616

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+N +E I    P +  + + T GV ++QEQVM++A + + Y+  EAD LRRAM   
Sbjct: 617  YLRRRNKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADELRRAMAAW 675

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    ++  +ER  +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W+
Sbjct: 676  KRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWL 735

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------- 832
            K H P  F  A +           +  QDAR+ +I+I P  V     D  +         
Sbjct: 736  KCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDST 795

Query: 833  --NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                I   L  ++G     AR I  A + + F    D   R     L+ R  E+L  +GA
Sbjct: 796  RNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLTLRA---GLDARAAEALADSGA 852

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            L      R +    +  +                 +F ++  +   ++TL   +V   + 
Sbjct: 853  LRGLIGHRHRARWEVAGV------------EAQRPLF-NDLPSEDTQVTLPLPTV---AE 896

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +   LG     HPL + +  L     +  ++ +       + +A +V+ +Q+  T 
Sbjct: 897  DLMADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLHLENDRTLSVAGLVIGRQRPGTA 956

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G  + +VT  +         +
Sbjct: 957  SG--VTFVTLEDEFGMVNVVVW 976


>gi|149195118|ref|ZP_01872210.1| DNA polymerase III subunit alpha [Caminibacter mediatlanticus TB-2]
 gi|149134831|gb|EDM23315.1| DNA polymerase III subunit alpha [Caminibacter mediatlanticus TB-2]
          Length = 1016

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/899 (39%), Positives = 533/899 (59%), Gaps = 38/899 (4%)

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
                  A      +K  F   L++ ++R +  +   E+ ++ L+    +PL+A+ N  +L
Sbjct: 22   AKGYDKAINIASIYKNDFK-NLFLEIRRDKKEENLIENDLITLSKETNIPLIASTNIFYL 80

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            ++EDY   D L  +  +       R     + YLK++ E   +F DLPEALEN   +   
Sbjct: 81   NKEDYIYKDALECIESNKQFDDVHREYDIGEFYLKSKEEYEELFKDLPEALENNKVL-EE 139

Query: 281  CSFILQVHAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
             +  + +  P  P F       +KE  +I  + E     K   GL+ RL +         
Sbjct: 140  INLEIPLGNPTPPTFKFTKEYAKKEGLEIDSDVE-YFEYKCKEGLKKRLKKIP---KELH 195

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK---------NNIPVGPGRGSGAGSV 385
            ++Y++RL++E+++I +MKF GY LIV DFI +AK          N IPVGPGRGS AGS+
Sbjct: 196  EEYKKRLEYEIDIIKKMKFPGYMLIVWDFINYAKDPSRHLRGDGNKIPVGPGRGSAAGSL 255

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AYAL IT+IDP+++ LLFERFLNP+R+SMPD D+DFCQ+RR+EVI YVQ KYG E VAQ
Sbjct: 256  VAYALEITNIDPIKYGLLFERFLNPERVSMPDIDVDFCQERREEVIEYVQKKYGKENVAQ 315

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
            ++TFGSL AK  LRD+ R   + YS  D+  KLIP+     +  +A   + + +E    +
Sbjct: 316  VVTFGSLLAKGVLRDIARIFGIEYSTADKFVKLIPDKLGITLK-EAKELEPKIQEIVNEE 374

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR-DVRSDLPVTQFNMKWIE 564
            P  +RL    + LEGL R+   HAAG+VI D  L +  P+Y+ D   D   TQ+++ ++E
Sbjct: 375  PLYERLYSFGEALEGLKRNTGKHAAGVVISDTKLWEKSPLYKQDENDDFHTTQYSLNYLE 434

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
               LIKFDFLGLKTLT++ K++  + Q     +D+  +  DD + + L+ +  TLG+FQ+
Sbjct: 435  PVDLIKFDFLGLKTLTVIDKAIKNIKQNQNKDIDIDDLSLDDEKVFKLIQSGKTLGLFQI 494

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHP----L 677
            ES GM+   + ++P+  ED+IA+++LYRPGP+D  +   Y  RK+G+++I         +
Sbjct: 495  ESDGMQDLAKRLKPENFEDVIAMLALYRPGPMDAGMLDDYIERKHGRKEISYFFDEFEEV 554

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            + P+LK T GVI+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M K  E F + A+
Sbjct: 555  LKPILKPTYGVIVYQEQVMQIVQAIGGFSLGEADIIRRAMGKKKADLMAKYAEEFATRAA 614

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            K G S   A ++F L+ KFA YGFNKSH+AAYA+I+YQTA++KT+YP EF A+ ++ E D
Sbjct: 615  KRGFSYENAKSLFNLIEKFAGYGFNKSHSAAYAMITYQTAFLKTYYPTEFFASLLSYEAD 674

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
            N EKI K+  +A+   I+++PP VN    +F    N+I + L+AIKGVG+     I+   
Sbjct: 675  NTEKIAKYIDEAKSMQIEVLPPDVNKSNYEFTPVKNKILFGLSAIKGVGSKAIESIV--- 731

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE- 916
             ++PF  LEDF  ++D+ K+N++VLE L+ +GA+D FGYSR  LLQ+L+N+ ++ + +E 
Sbjct: 732  TNRPFSDLEDFILKIDTSKVNKKVLEQLIKSGAMDSFGYSRKTLLQNLENMLEFKKRIED 791

Query: 917  -KNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
             KN  N   ++FA   E+    +K+ +      ++    + E   LGFY S HPLD YK 
Sbjct: 792  RKNAINHKNSLFADIVEENEVEEKLEINITDEFDTKTLLDGEYETLGFYVSAHPLDPYKE 851

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++K+      E    I G        V S + + ++KG++   V+  +   ++E   F
Sbjct: 852  EIQKIKYNLSSEIEEII-GKEALFIGKVESMKVRISKKGNKFAIVSIMDYHGKFEVMVF 909


>gi|301301229|ref|ZP_07207385.1| DNA polymerase III, alpha subunit [Lactobacillus salivarius
            ACS-116-V-Col5a]
 gi|300851228|gb|EFK78956.1| DNA polymerase III, alpha subunit [Lactobacillus salivarius
            ACS-116-V-Col5a]
          Length = 1097

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/1028 (30%), Positives = 513/1028 (49%), Gaps = 53/1028 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV SSYSLL+  L +   +         A+ +TD N+++  L+F  +   AGI+PI
Sbjct: 2    YAPLQVLSSYSLLQSPLRIPEYVKLGKELGYNALVLTDINSMYGVLDFYHECVKAGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L     +                  + +   + GYQ L+ + S+            
Sbjct: 62   IGITLQSGDDE-----------------YIFIAKNSNGYQNLMNISSKRLTAVDENYKNI 104

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG--DRLYVNLQR 188
              L+ + E   + +++L         +  +   + +   ++   + L    +  Y  +  
Sbjct: 105  FKLADITEYLQDVIVIL---------KPSYLTVNDIISDQVTELQTLVSAAETTYYGV-- 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                DR   +  +  A   +L  +      +L E DY +  VL A+     V+  +    
Sbjct: 154  -NPNDRDAINNDLMAAEKLQLETILLTPVKYLKERDYFSTKVLQAIGTGENVN-PNWNLK 211

Query: 249  TPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  +YL    E   +    L  A +N + +  +C+  L      LP F E          
Sbjct: 212  SDGNYLHTPEEYERLGADYLSSAYQNAINMIAQCNLTLNFPKTQLPHFKETNG----LSS 267

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+ LR     GL  R+A+  I    + ++Y+ RLD+EL+VI RM F  YFLIV D   +A
Sbjct: 268  EDFLRKLCQEGLAKRIAEENIK---NQEEYQSRLDYELSVIHRMGFDDYFLIVWDVTNFA 324

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +NNI  GPGRGS AGS+ +Y L ITDIDP+++ L+FERFLN +R  MPD D+D    +R
Sbjct: 325  HENNILTGPGRGSAAGSLVSYTLYITDIDPIKYDLIFERFLNEERAQMPDIDLDIPDIKR 384

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D +I Y+  KYG + +AQIITFG+L+ K  LRDV R   +   + D   K IP +    +
Sbjct: 385  DTIIEYLHQKYGQQHMAQIITFGTLKTKQVLRDVARVFDLKTYEADAWSKAIPKEYGITL 444

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A A     +     +     L E +  LEGL RH STH+AGI++ D  L   VP+  
Sbjct: 445  K-EAYASSQSLKNLVADNSKNRLLFETAIALEGLPRHYSTHSAGIILSDDDLVDHVPVQI 503

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                 + ++QF    +E+ GL+K DFLGL+ L++L+ ++  + +   +  D+  I  DD 
Sbjct: 504  G-GDGILMSQFAKNQVEEVGLLKMDFLGLRNLSILENTITLIKKGYHIDFDIRKINLDDP 562

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ET  +     T GIFQ ES+G+R  L  ++P   ED+ A+ +LYRPGPI NI  +  RK+
Sbjct: 563  ETLKIYQNAETSGIFQFESAGIRGVLTKLKPTSFEDVAAVNALYRPGPIQNIDEFIARKH 622

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+  I      ++ +LK+T G+++YQEQVMQ+A  + G++L +AD LRRAM KK  + + 
Sbjct: 623  GERPITYPSKELEGILKQTYGIMVYQEQVMQVASTMGGFTLGQADSLRRAMSKKKHDIIS 682

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + +  FI+GA K G +  +A  ++  + +F DYGFN+SHA AY+ +S++ A++K HYP  
Sbjct: 683  RMEVMFINGAMKKGYTHEVAKKVYAYIMEFGDYGFNRSHAVAYSKMSFELAYIKAHYPAA 742

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F AA +   + N  K K +  +A+   +++  P +N     + + +  IY+ L+ IK + 
Sbjct: 743  FFAALLNSVIGNPRKTKDYVLEAKNKGVRVHHPDINISQSLYILRNGEIYFGLSCIKSLR 802

Query: 847  TTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                + I++       F ++EDF  R+D + L R +++ L+++G  D FG SR +LL  L
Sbjct: 803  KNFLQDILQERKRSGIFKNMEDFLQRIDKRYLKRELIDILIYSGVFDTFGQSRKELLAML 862

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              +    +    N       +F+        K T+EK  + N     E E   LG Y SG
Sbjct: 863  PRLLSNIELSGNN-----VELFSMLAPK---KTTVEKIKISND-ELLEKENYYLGAYLSG 913

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP++ Y  ++         +   + +   + +   +   +  +T+ GS++ +VT ++   
Sbjct: 914  HPVEKYTELIYLTNSTRVSQINESNKDKYVSMILQIKVIKIIRTKNGSQMAFVTAADQTG 973

Query: 1026 EYEANFFP 1033
              +  FFP
Sbjct: 974  NMDLTFFP 981


>gi|260662144|ref|ZP_05863040.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            fermentum 28-3-CHN]
 gi|260553527|gb|EEX26419.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            fermentum 28-3-CHN]
          Length = 1099

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/1030 (33%), Positives = 515/1030 (50%), Gaps = 67/1030 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L V S YSLLE  +    ++         A+ + D   L+ A+ F ++A  AG+ P
Sbjct: 2    GFVPLAVKSMYSLLEAPVRPAELVAVAKERGYQAVGLVDARVLYGAVNFVRRANQAGLHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG  L +   +                 + LL   A GYQ L  L +R       +   
Sbjct: 62   VIGVSLPLTFAEG-------------TLDVTLLAKGAVGYQNLTRLSTRAMTDRANQ--- 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + +  L+E+ ++ L+++         +      S+    +L       G  L       
Sbjct: 106  PLTIEDLREV-SDDLVVIVAP------QLMLLGVSEQTYAQLGEVADYLGINL------- 151

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
              +       +  +A    LPL+A     +L+E+DY A  VL A+     +    +  + 
Sbjct: 152  -DFTAAERQDLQAVAERCGLPLIALEPVEYLNEDDYFATQVLRAIKAGHTIEDPLKASQR 210

Query: 249  TPDHYLKNRSE--MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            T  H+L+   E       + L EA   TV +A RC        P+LP F       +   
Sbjct: 211  TGRHWLRPAEEVAAAYRAAGLAEAAAQTVAVAERCQVHFADQTPVLPAFPTPAGQGV--- 267

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     GL  R   G  A      +Y+ RL+ EL VI +M F  YFLIV D + +
Sbjct: 268  -ADYLRELCQRGLAKRKLAGDPA------EYQARLEHELTVIHQMGFDNYFLIVWDLMNF 320

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A ++ I  GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLNP+R  MPD D+D   +R
Sbjct: 321  AHQHQILTGPGRGSAAGSLVAYALAITDVDPLQYGLLFERFLNPERAQMPDIDLDLPDNR 380

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ Y+ + YGHERVAQIITFGSL  K  LRDV R   +P  QV+ L ++I       
Sbjct: 381  REEVLNYLHHHYGHERVAQIITFGSLGTKQVLRDVSRVFNLPKYQVESLSQVIDRVKGPH 440

Query: 487  VSLQAIADDSRFREARLADPS-VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +L  + + ++  +    D   V  LLE++ KLEGL RH S HAAG+V+   PL + VP+
Sbjct: 441  QTLADLLESAQPVQNLARDSKLVACLLEVAAKLEGLPRHDSIHAAGVVLAAEPLIKTVPL 500

Query: 546  YRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                    + VTQF    +E  GL+K D LGL+ LT ++ +L+ + Q     DL+ I  +
Sbjct: 501  QAGNEPGAMLVTQFEKDTVESLGLLKIDLLGLRNLTTVETALNLIHQHQPDFDLTHIALN 560

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  T  L     T GIFQ ESSG+RQ L  + PD  E+I+A+ +LYRPGP+DNI  +  R
Sbjct: 561  DRPTLALFDRGQTSGIFQFESSGIRQTLVNLHPDNFEEIVAVNALYRPGPMDNINHFIAR 620

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K G+E +      + P+L  T G+++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    
Sbjct: 621  KKGQEAVNLPAKELAPILAPTYGILVYQEQVMQVAAVMGGFSLGEADLLRRAMSKKKLAT 680

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M   KE F++GA+K G    +A  +F  + +FA+YGFN+SHA AY+ ++++ A++K H+P
Sbjct: 681  MASMKEAFLAGANKRGYPNAVAEQVFAYIDQFANYGFNRSHAVAYSKMAFEMAYLKVHFP 740

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EFLAA M  +  +  K+  +  +A+Q  I    P++N       + D  ++  L  IKG
Sbjct: 741  AEFLAALMETDP-DTSKVWAYFSEAKQLGITTHGPAINQSQERVSLVDQELWLGLDMIKG 799

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     R I+E      P+  L D  +R+D+K     +   L+ AGALD  GY+R ++ +
Sbjct: 800  LRRDFIRAIIEERNQHGPYQDLPDLVNRLDAKWHKEALFVPLIDAGALDHLGYNRAEMAE 859

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L  I + A++                         + + +    +VR   E  VLG Y 
Sbjct: 860  GLKAILEGAEYA---------------GLGLGMAPVVAQRNEYPLAVRLAREHAVLGTYL 904

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSE 1022
            SGHP+  Y+ +  K+ +    +         +RL  MV   ++  T++    + ++T S+
Sbjct: 905  SGHPVSQYQDLRTKLKLPTVAQL---RPNQRVRLVLMVTRMRKVTTKREHKPMAFLTASD 961

Query: 1023 PAKEYEANFF 1032
                 E   F
Sbjct: 962  ETGAVEVTIF 971


>gi|268319606|ref|YP_003293262.1| hypothetical protein FI9785_1131 [Lactobacillus johnsonii FI9785]
 gi|262397981|emb|CAX66995.1| dnaE [Lactobacillus johnsonii FI9785]
          Length = 1038

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/1028 (32%), Positives = 529/1028 (51%), Gaps = 45/1028 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQ  SS++LLE    + N+ +        AIA+TD N  +  ++F + A   GI+P++
Sbjct: 4    VSLQNLSSFTLLESPTKVKNLAENAKKKGYSAIALTDINITYGLVDFYKAAKDTGIKPLL 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVR 130
            G Q          +   G         ++++    +GY+ ++ L S + LL + G++   
Sbjct: 64   GMQ----------LRINGLIDEANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENV 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR--LYVNLQR 188
            +    L++     LI++T  +     +    N+ ++    L   +        +Y+ +  
Sbjct: 114  LTFEDLKKYLGH-LILITPSNLHSELKMLQTNNPKMGANYLRKLQDSLPSSSSMYLGVYA 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
              G   Y    +  LA    LPL A  +  +L+  +      L A+  +T +   ++  +
Sbjct: 173  DSGQQEYIN-YIRSLATQFSLPLTAVEDGQYLNRNEQFLRRTLQAIKTNTHLENVEQLAK 231

Query: 248  VTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                HYLKN  E+   +   D+ +ALEN  +I + C+  ++   P LP+F + +      
Sbjct: 232  QAGSHYLKNSEELQVSYRKFDIEDALENAEKIGKICTAEIKFQDPQLPKFKQNKFP---- 287

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L   A  GL  R      A+      Y++RLD+EL VI  M F  YFLIV D + 
Sbjct: 288  TSKEYLHALAQEGLAKRFNDQIPAQ------YQKRLDYELQVINEMGFDNYFLIVWDVMN 341

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A   +I  GPGRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D+D   +
Sbjct: 342  FAHSVHITTGPGRGSAAGSLVSYALRITEVDPIEYNLLFERFLNPARQQMPDIDLDIPDN 401

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI+Y+  KYG    AQI+TFG+L AK  L+DV R   +   +  R    IP+    
Sbjct: 402  RRDEVIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHSKGK 461

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                +A       +     +     L   ++ LE L RH S HAAG+VI D  L+++V +
Sbjct: 462  ITLAEAYQKSKELQLLVNTNELSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVGL 521

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                   +PVTQ     +E  GL+K DFLGL+ LT+L   +  L   G+ +D + IP DD
Sbjct: 522  QAGPL-GIPVTQQTKLNVESLGLLKIDFLGLRNLTILGNIVAALRADGIDIDPNQIPLDD 580

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             ET  L     T  +FQ ES G+++ LE + PD  EDI+A+ +LYRPGPI+NI  + NRK
Sbjct: 581  QETLALFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPINNIDHFINRK 640

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKE++    P +  +L  T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK  E +
Sbjct: 641  HGKERVQYPDPSLKKILGTTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNAEVI 700

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             +++ +FI GA K G  K  A  +++ +A+FA+YGFN+SHA AY+ I++  A+ K HYP 
Sbjct: 701  QRERAKFIEGAIKLGRKKETAEKVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYPG 760

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  A +   M N  KI ++   A++  I+I+PP +     DF + + +I   L AI+G+
Sbjct: 761  AFYLALLNSNMGNRHKIAQYLMQAQEAGIKILPPDIENSKADFSLENGKILVGLKAIRGL 820

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
             +   + I+E    +P  S+ DF  ++D+  L+   + +L+ AG  D    +R +LL+  
Sbjct: 821  RSDLLKQILEI--KRPIKSMTDFLWKIDNNLLSADAVGNLIKAGTFDRLAPNRNELLKIN 878

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             ++ +  +    N      ++F     T   K+  EK     ++ +   E   +GF    
Sbjct: 879  KDLVESVKMAGSN-----LSLF----ETLEPKVEEEKMP--TAAEKSAMEVEAMGFSTGI 927

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            +P+   +   RK   K  +   +  +G  +     ++  +Q  T+KG  + +  FS+ + 
Sbjct: 928  NPIIAVQKYARKFNAKRLQVFESNEQGIAV---GKLMKVKQITTKKGDNMAFAVFSDTSG 984

Query: 1026 EYEANFFP 1033
            E +   FP
Sbjct: 985  EKDFTIFP 992


>gi|237810714|ref|YP_002895165.1| error-prone DNA polymerase [Burkholderia pseudomallei MSHR346]
 gi|237505761|gb|ACQ98079.1| error-prone DNA polymerase [Burkholderia pseudomallei MSHR346]
          Length = 1076

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/1050 (26%), Positives = 449/1050 (42%), Gaps = 65/1050 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D     + G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDDAAPGHDPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 127

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             R+    L         +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 128  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLVQ 187

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D     QV        + +VA  +            D + A+     +++     
Sbjct: 188  LQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHAL 247

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 248  APNGEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----HT 301

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D +++
Sbjct: 302  PTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVKY 355

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A SV  Y L +T+I+P + +LLFERFL+ +R   PD D+DF   R
Sbjct: 356  ARSKDI-LCQGRGSAANSVVCYCLGVTEINPQQSTLLFERFLSRERGEPPDIDVDFEHQR 414

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 415  REEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 474

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L   A      E     P +    EI+ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 475  DLLARFASVGLDPEV----PLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVE 530

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 531  NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 590

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 591  HIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 650

Query: 659  -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
               Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 651  VHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 710

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM   K K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A 
Sbjct: 711  LRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAK 770

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 771  LAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASLE 830

Query: 831  ---------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                     G   +   L+ ++G+G   AR I  A A  PF S+++   R       RR 
Sbjct: 831  AQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAACAAGPFASVDELARRACL---ERRD 887

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE+L  A A      +R   L             +         + A      + +  L 
Sbjct: 888  LEALAAANAFATLAGNRRDALW------------QAVAAAPERGLLAAAPIDEAVRPALG 935

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
              +  +       + R +G   + HP+ + +P L    +           G   R   +V
Sbjct: 936  APTEADDVF---ADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGLV 992

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             ++Q   T KG  + +VT  +         
Sbjct: 993  TARQMPGTAKG--VLFVTLEDETGCVNVIV 1020


>gi|213966980|ref|ZP_03395130.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato
            T1]
 gi|302059720|ref|ZP_07251261.1| error-prone DNA polymerase [Pseudomonas syringae pv. tomato K40]
 gi|302134128|ref|ZP_07260118.1| error-prone DNA polymerase [Pseudomonas syringae pv. tomato NCPPB
            1108]
 gi|213928302|gb|EEB61847.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato
            T1]
          Length = 1031

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/1039 (26%), Positives = 457/1039 (43%), Gaps = 84/1039 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + D+       A+AITD   L   +   Q +   G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFDRALRHGYAALAITDECTLAGIVRAWQASKDTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++                  P IVLLV    GYQ L  L++      + K   R
Sbjct: 65   VGSEMHLENG----------------PKIVLLVENLTGYQALCTLITVARRRAK-KGEYR 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L     +    L +      G         +           ++ F +RL++ ++ HR
Sbjct: 108  LLLEDFDHLPGGLLAIWLADIEGDAQACLAQGN---------WLRERFAERLWLGVELHR 158

Query: 191  G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
            G  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V++       
Sbjct: 159  GADDEQRLADLLALAQSLAIPAVASGDVHMHARGRRALQDTITAIRHHTTVAEAGHLLFA 218

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + +L++   +   + D    L  ++ IARRC+F         P  +  +     +   
Sbjct: 219  NGERHLRSLDALAEHYPDW--LLAESLRIARRCTFTFDQLHYEYPHELVPKG----QTST 272

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR     G+  R  +G           R +++ EL +I   KF  YFL V D +++A+
Sbjct: 273  SWLRELTERGIRRRWPRGLGVAA------RAQVEKELALITEKKFDSYFLTVHDIVEFAR 326

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  DRR+
Sbjct: 327  SQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERDEPPDIDVDFEHDRRE 385

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  +YG  R A      +     ALRDV + L +P  Q++ L             
Sbjct: 386  EVIQYIFRRYGRGRAALTAVASTYHGSGALRDVAKVLGLPPDQINALADAFSRWS----- 440

Query: 489  LQAIADDSRFRE--ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              ++    R RE       P + R+L ++ +L G  RH S H  G VI + PL  LVP+ 
Sbjct: 441  -DSLPSPERLREYGFDAETPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLDTLVPVE 499

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                ++  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P DD
Sbjct: 500  NAAMAERTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKQWTLASLPGDD 559

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
              TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  Y  
Sbjct: 560  RPTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLR 619

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+N +E I    P +  + + T GV ++QEQVM++A + + Y+  EAD LRRAM   K  
Sbjct: 620  RRNNEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADQLRRAMAAWKRH 678

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +D  +ER  +G   NG     A  IFE +  F  YGF +SHAA++A+++Y + W+K H
Sbjct: 679  GGLDPHRERLRTGMLANGYDADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCH 738

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD---------N 833
             P  F  A +           +  QDAR+ +I+I    V     D  +            
Sbjct: 739  EPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRSVDVRYSHWDCTLEPLDHPDSTRNL 798

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I   L  ++      A  I  A + +PF    D   R     L+ R  E+L  +GAL  
Sbjct: 799  AIRLGLRMLRSFREEDALRIEAARSKRPFADATDLAQRA---GLDSRAAEALADSGALRG 855

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R +    +  +                 +F  +  +   ++TL   +V   +    
Sbjct: 856  LIGHRHRARWEVAGV------------EAQRPLF-DDVTSEEVQVTLPLPTV---AEDLV 899

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +   LG     HPL + +  L     +  ++ +A      + +A +V+ +Q+  T  G 
Sbjct: 900  ADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLALENNRTLSVAGLVIGRQRPGTASG- 958

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + +VT  +         +
Sbjct: 959  -VTFVTLEDEFGMVNVVVW 976


>gi|183981180|ref|YP_001849471.1| DNA polymerase III, alpha chain, DnaE2 [Mycobacterium marinum M]
 gi|183174506|gb|ACC39616.1| DNA polymerase III, alpha chain, DnaE2 [Mycobacterium marinum M]
          Length = 1100

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/1041 (27%), Positives = 488/1041 (46%), Gaps = 59/1041 (5%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
               ++ S ++  L  HS+YS L+GA +   ++++ A     A+A+TD N L+ A+ F++ 
Sbjct: 55   ANRVDSSIAYAELHAHSAYSFLDGASTPEELVEEAARLDLRALALTDHNGLYGAVRFAEA 114

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   G++ + G +L +  +         + P P  P +++L    EGY+RL   ++  +L
Sbjct: 115  ASGLGVRTVFGAELSLGPEART------EQPDPPGPHLLVLARGPEGYRRLSRQLAAAHL 168

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180
                K   R     L E       +LTG   G + +A        AE+ L      F   
Sbjct: 169  AGGEKGKPRYDFDSLTEAAGGHWHILTGCRKGHVRQALRQGGPDAAERALADLVDRFTAG 228

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HST 238
            R+ V L  H    D    + +  LA    + +VAT  + F           + A+    +
Sbjct: 229  RVSVELTHHGHPLDDENNAMLAGLAPRFGVGVVATTGAHFAHPARSRLAMAMGAIRARQS 288

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            + S           +L++ +EM  +F+  P+ +    E+  +C+F L + AP LP F   
Sbjct: 289  LDSAAGWLAPLGGSHLRSGAEMARLFAQRPDVVTAAAELGEQCAFGLALIAPRLPPFDVP 348

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +       E++ LR+  ++G   R   G+  +   A+    +++ EL VIA++ F GYFL
Sbjct: 349  DG----HTEDSWLRSLVMSGARERY--GSTERSPRARKAYTQIEHELKVIAQLSFPGYFL 402

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D  Q+ ++N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P+R   PD 
Sbjct: 403  VVHDITQFCRRNDI-LCQGRGSAANSAVCYALGVTAVDPIANELLFERFLSPERDGPPDI 461

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DID   D+R++VI+YV NKYG +  AQ+    + + ++A+RD+ RAL     Q D   K 
Sbjct: 462  DIDIESDQREKVIQYVYNKYGRDYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQ 521

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            I +  A P  ++ I +               ++++++ ++  L RH   H+ G+VI DRP
Sbjct: 522  IGHWNATPDDVEGIPE---------------QVIDLAAQIRNLPRHMGIHSGGMVICDRP 566

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
            ++ + P+     +D  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VD
Sbjct: 567  IADVCPVEWARMADRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYARDLVAEHKGIEVD 626

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI  
Sbjct: 627  LARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQG 686

Query: 658  I--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
                 Y  R+NG + +V  HP ++  L++T GV ++QEQ+MQ+A   +G+S +EAD LRR
Sbjct: 687  GSVHPYIRRRNGIDPVVYEHPSMESALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRR 746

Query: 716  AM-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            A+  K+  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + 
Sbjct: 747  AIGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLV 806

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            + ++W K H+P  F AA +  +       +    DAR+  + +  P VN       + + 
Sbjct: 807  FYSSWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVLVHGPDVNASLAHATLENA 866

Query: 834  RI--YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             +     L A++ +G   A  ++     + PF SL +  SRV     +    E+L  AGA
Sbjct: 867  GMQVRLGLGAVRHIGDDLAESLVAERNDNGPFASLLNLTSRVQL---SVPQTEALATAGA 923

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            L CFG SR +                               G+ S   TL   S      
Sbjct: 924  LGCFGMSRRE------------ALWAAGAAATQRPDRLPGVGSSSHIPTLPGMSE---LE 968

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
               ++    G     +P    +  L  +G+      ++   G  + +A  V  +Q+  T 
Sbjct: 969  LAASDVWATGISPDSYPTQFLRADLDALGVLAAAALLSVPDGERVLIAGAVTHRQRPATA 1028

Query: 1011 KGSRIGWVTFSEPAKEYEANF 1031
            +G  + ++   +         
Sbjct: 1029 QG--VTFINLEDETGMVNVLC 1047


>gi|117928203|ref|YP_872754.1| error-prone DNA polymerase [Acidothermus cellulolyticus 11B]
 gi|117648666|gb|ABK52768.1| error-prone DNA polymerase, DnaE-like protein [Acidothermus
            cellulolyticus 11B]
          Length = 1090

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/1042 (26%), Positives = 482/1042 (46%), Gaps = 61/1042 (5%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            L +  +++  +  L  HS++S L+GA     ++++ A      +A+TD +  +  + F++
Sbjct: 46   LPKQPDETVRYAELHCHSNFSFLDGASHPEELVEEAARLGLETLALTDHDGFYGVVRFAE 105

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A   G++ + G +L + +     +  +     P    +++L    EGY+RL   +S  +
Sbjct: 106  AAAELGVRTVFGAELSLSL-----VEPRAGAVDPDAVHLLVLARDPEGYRRLAVAMSAAH 160

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-G 179
            L   GK   +   + L        ++LTG   G + RA        A + +    ++F  
Sbjct: 161  LRGGGKGRPQYDETELAHTAGGHWLILTGCRKGRVRRALAAEGPDGAVREIDRLVEMFGR 220

Query: 180  DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            + + V L       D      +   A    LP+VAT N+ + + +       L AV    
Sbjct: 221  ENVAVELTDDGQPLDSAANDVLAAAAVRCGLPVVATTNAHYATPDRGRLAAALAAVRARK 280

Query: 239  VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             + +        P  +L++  EM   F+  P A+ N   +   C+F +++ AP LP F  
Sbjct: 281  SLDEIAGWLPAAPVRHLRSGVEMAQRFARYPGAVANAARLGAACAFDVRLIAPRLPDFPV 340

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                     E + LR  A+ G   +         +   D  ++LD+EL+VI ++ F GYF
Sbjct: 341  PPG----HTEMSYLRELAMRGAAEKY-----GPPHQRPDVYRQLDYELDVIEQLGFPGYF 391

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+V + +++ +   I +  GRGS A SV  Y L IT  DP+ F LLFERFL+P+R   PD
Sbjct: 392  LVVWEIVEFCRSRGI-LCQGRGSAANSVVCYVLGITKADPIAFRLLFERFLSPERDGPPD 450

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+D    RR+EVI+YV ++YG ER AQ+ T  + + ++A+RD+ RAL     Q D   K
Sbjct: 451  IDVDIESGRREEVIQYVYSRYGRERAAQVATVITYRPRSAVRDMARALGYSPGQQDAWSK 510

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
             +      P   +A  D              D ++ +++++ G  RH   H+ G+VI DR
Sbjct: 511  QLDRYGEIPRGSEADHDVP------------DDVVHLARQVLGFPRHLGIHSGGMVICDR 558

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKV 596
            P++++ P+         V Q++     + G++KFD LGL  L+ L++  D +     V++
Sbjct: 559  PVAEVCPVEWARMPGRSVLQWDKDDCARIGVVKFDLLGLGMLSALRECFDLIETYHGVRL 618

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             L  IP +D   Y +L    ++G+FQ+ES      L  +QP    D++  V++ RPGPI 
Sbjct: 619  SLETIPPEDPAVYDMLCAADSVGVFQVESRAQMATLPRLQPRNFYDLVTEVAIIRPGPIQ 678

Query: 657  NI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
                  +  R+ G+E +   HPL+   L+ T GV ++QEQ+MQ+A  ++G + +EAD LR
Sbjct: 679  GGSVHPFIRRRRGREPVRYAHPLLRHSLERTYGVPLFQEQIMQMAIDVAGLTPAEADHLR 738

Query: 715  RAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            +AM  K+  E M++ K +  +G ++NGI+  +A  I+E L  FA +GF +SHA ++A + 
Sbjct: 739  QAMGAKRSVERMERLKAKLYAGMARNGITGAVADEIYEKLQAFAHFGFPESHAISFAFLV 798

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV----DFK 829
            Y +AW+K +YP  F AA +          +    DAR+  + I  P V +       +  
Sbjct: 799  YASAWLKKYYPAAFCAALLNAAPLGFYSPQTVVADARRHGVVIRRPCVASSATKTILEPM 858

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             G   +   L+ +KGV   TA  I+      P+  + D   R +    +   LE+L  AG
Sbjct: 859  DGGWAVRLGLSLVKGVSAETADRIVARR---PYRDMADLARRCELSVTH---LEALAAAG 912

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A +CFG  R Q L    +                   F    G  +    L   +   ++
Sbjct: 913  ACECFGLDRRQALWLAGSA--------AETRPGQLEGF----GVEATPPRLPPMTEMETT 960

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
            V    + R LG     +P    +  L +MG+    +       + + +  +V   Q+  T
Sbjct: 961  V---TDLRFLGISPDVYPTAHVRDQLTEMGVVPAAQLHRVAPDSRVLVGGVVTHWQRPAT 1017

Query: 1010 RKGSRIGWVTFSEPAKEYEANF 1031
             +G+   ++   +         
Sbjct: 1018 ARGTT--FLNVEDETGMVNVIC 1037


>gi|310821701|ref|YP_003954059.1| DNA polymerase III subunit alpha [Stigmatella aurantiaca DW4/3-1]
 gi|309394773|gb|ADO72232.1| DNA polymerase III, alpha subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 1007

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/1030 (27%), Positives = 468/1030 (45%), Gaps = 75/1030 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S L GA     ++   A    PA+A+TD + L+  ++    A   G++ I
Sbjct: 2    YAELVCRSNFSFLRGASHPEELVATAARLGLPALALTDGDGLYGVVKAHLAAREHGLKLI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L +                   P +V+    A GY  +  LVS   +    K    
Sbjct: 62   LGTELTLTEG----------------PPVVVYAMDAGGYANMCRLVSASRMA-HPKGETG 104

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +    + E  +EGLI L    +                +++    + F  R +V L R  
Sbjct: 105  LPWREVAE-RSEGLIALLPHPAP--------------IEQVGGLAEAFPGRFHVGLCRTL 149

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRV 248
               D  RE++   LA    +PL A N+            DVL A+ H T V +   R   
Sbjct: 150  SAGDGPREARAEALARELGVPLCAHNDVHVHHRRRQPLQDVLTAIRHKTTVDKAGTRLLP 209

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +  LK+ +EM  +F D PEA+E T+EIA+RC   L            +E         
Sbjct: 210  NAERTLKSPAEMARLFRDRPEAIERTLEIAQRCHATLDDLRY----HFSEEDLPPGLTAM 265

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL VR   G         + R++++ E+ +I  + F GYFL + D +++A+
Sbjct: 266  GHLRQLTEEGLGVRYPAGV------PPEVRKQVEHEMRLIEALDFPGYFLALWDIVRFAR 319

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I +  GRGS A SV  YAL +T IDP+R  LLFERFL+ +R   PD D+DF  +RR+
Sbjct: 320  SRGI-LCQGRGSAANSVVCYALQLTAIDPVRMGLLFERFLSMERKEPPDIDVDFEHERRE 378

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EV++YV  K+G  R   +  F   + + ALR+VG++L +   QVDRL K +       V+
Sbjct: 379  EVLQYVYEKHGRHRAGMVCEFICYRGRLALREVGKSLGLSLDQVDRLSK-VAAASGFEVT 437

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             + + +          D  V + L +++++EG  RH S H  G VI   PL  L+P+   
Sbjct: 438  PEVLVE----AGLSAFDSRVRQTLTLAREMEGFPRHVSIHVGGFVITREPLVDLIPVENA 493

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
                  V Q+        G++K D L L  LT + K L  + +    ++ L+ IP +D +
Sbjct: 494  AMKGRTVIQWEKDDTNALGVLKVDLLALGMLTAVSKCLALIREHFGRELSLATIPPEDPK 553

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRK 665
             Y +L    T+G+FQ+ES      L  ++P    D++  ++L RPGPI  + +  Y  R+
Sbjct: 554  VYDMLCEADTVGVFQIESRAQMNMLPRLKPRTFYDLVIEIALIRPGPIVGNMVHPYLRRR 613

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE- 724
            NG+E      P +  +L++T GV ++QEQ M++A + +G++  EAD LRRA+G K  E+ 
Sbjct: 614  NGEEVPTYPTPDVQAILEKTLGVPLFQEQAMKLAMVAAGFTAGEADGLRRALGHKRAEQL 673

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            ++  + RF+ G  K G        +F     FA YGF +SH+A++A+I+Y ++W+K HYP
Sbjct: 674  LEPYRMRFVEGGRKRGYPAAYMEELFAQFRGFAHYGFPESHSASFALIAYASSWLKCHYP 733

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
              F  A +  +            DAR+  +++ P  V     D  + +   +   L  ++
Sbjct: 734  QAFTTALLNSQPMGFYAPHTLVADARRHGVEVRPVDVRHSGWDCTLEEGGALRLGLRMVR 793

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            G+G    + +  A A   F  L D   R    ++ R  L  L  AGAL     SR Q L 
Sbjct: 794  GLGEAAGKRVAAARAGG-FSCLGDVARRT---RIPRHELTRLALAGALASLCGSRRQALW 849

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             +  +               +++F       + ++ L    V   + R   +   +G   
Sbjct: 850  EIQAL----------GPLDADDLFFGMSMDGT-QVELPPMGV---AERVTADYETVGLSL 895

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
              HPL++ +P LR +G    E       G  + +  M++ +Q+  T +G  + +++  + 
Sbjct: 896  EKHPLELLRPTLRTLGAVSAEGLQRVSSGRRVAVGGMLICRQRPPTARG--MCFLSLEDE 953

Query: 1024 AKEYEANFFP 1033
                     P
Sbjct: 954  TGIANLVVPP 963


>gi|257885304|ref|ZP_05664957.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,501]
 gi|257821156|gb|EEV48290.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,501]
          Length = 1104

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/1033 (31%), Positives = 523/1033 (50%), Gaps = 65/1033 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++                 ++       GYQ+L++L SR  + +       
Sbjct: 63   IGLHLSYTYEE-------------KNYGLLAYAKDEIGYQQLMKLSSRKMIQE------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
                 L E+     +     ++  +  A  FN             + +F    Y+ L  +
Sbjct: 103  --KLDLAEMTETDHLAFVVPANHSVSEA--FNKEDNFFGHWQFLLENVFTRNFYIGLTEN 158

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR---P 246
               D+  E    Q        L A +    L +E+  A +V+  +   + +  ++     
Sbjct: 159  T-PDQLPEW--YQYVIKENYSLCALHPIASLQQEELFALEVMKHIKDGSQIPLENLSASL 215

Query: 247  RVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             +T + YL +  EM+  F  + L +A+     +A   SF  Q H  +LP +         
Sbjct: 216  PLTANGYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG---- 271

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K+    LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFLIV D +
Sbjct: 272  KQAGEYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFLIVWDVM 324

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D   
Sbjct: 325  AFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPD 384

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN   
Sbjct: 385  NRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLK 444

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              ++ QA     +  E   A      L + +  LEGL RH STHAAG+VI D+ L +LVP
Sbjct: 445  ITLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLLELVP 503

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            + R       +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  +P 
Sbjct: 504  LQRGSDEAF-LTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLKEMPL 562

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  
Sbjct: 563  NDAKTLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNIDTFIA 622

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+
Sbjct: 623  RKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKD 682

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +D++K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A++K H+
Sbjct: 683  VLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHH 742

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAI 842
            P  F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AI
Sbjct: 743  PGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFGLTAI 802

Query: 843  KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KG+       I+     + PF S++ F  R+D + L   +L+SL   G  D    +R QL
Sbjct: 803  KGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQL 862

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            +  L+   +   +     +    ++           +  E+ +      R + E+  LG 
Sbjct: 863  MLDLEGKIQNIVY-----SGGSLDLLGIMA------LKEEEVADYTLEERLKLEEEYLGI 911

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y SGHP + +     ++ +    + +  I     + L  M+   ++ +T+KG  + +V  
Sbjct: 912  YLSGHPAEGF----DRLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMAFVEG 967

Query: 1021 SEPAKEYEANFFP 1033
            ++ + E     FP
Sbjct: 968  TDSSGEISVTVFP 980


>gi|41409574|ref|NP_962410.1| error-prone DNA polymerase [Mycobacterium avium subsp.
            paratuberculosis K-10]
 gi|71151829|sp|Q73U92|DNAE2_MYCPA RecName: Full=Error-prone DNA polymerase
 gi|41398405|gb|AAS06026.1| DnaE2 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 1093

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1040 (26%), Positives = 477/1040 (45%), Gaps = 60/1040 (5%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +    S  +  L  HS++S L+GA +   ++++ A     A+A+TD + L+ A+ F++ A
Sbjct: 50   RAARSSVPYAELHAHSAFSFLDGASTPEEMVEEAARLDLRALALTDHDGLYGAVRFAEAA 109

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                ++ + G       + +L  + + + P P  P +++L    EGY+RL   ++  +L 
Sbjct: 110  AELDVRTVFGA------ELSLGPSARTEAPDPPGPHLLVLARGPEGYRRLSRQLAAAHLA 163

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDR 181
               K   R  L  L E       +LTG   G + +A        A + L      F   R
Sbjct: 164  GGEKGKPRYDLDALTEAAGGHWHILTGCRKGHVRQALSDGGPDAAARALADLVDRFGAAR 223

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TV 239
            + + L RH    D  R + +  LA    + +VAT  + F           + A+    ++
Sbjct: 224  VSIELTRHGQPLDDERNAALAALAPRFGVGVVATTGAHFAGPSRRRLAMAMGAIRARESL 283

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             S           +L++ +EM  +F+  P+A+    E+  +C+F L + AP LP F   +
Sbjct: 284  DSAAGWLAPLGGSHLRSGAEMARLFAWRPQAVTAAAELGEQCAFGLALIAPRLPPFDVPD 343

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E++ LR   + G   R          HA     +++ EL VIA+++F GYFL+
Sbjct: 344  G----HTEDSWLRQLTMTGARDRYGS-----PEHAPRAYAQIEHELKVIAQLQFPGYFLV 394

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D  ++ ++NNI +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D
Sbjct: 395  VHDIARFCRENNI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDID 453

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +D   D+R++VI+YV ++YG +  AQ+    + + K A+RD+ RAL     Q D   K I
Sbjct: 454  MDIESDQREKVIQYVYDRYGRDYAAQVANVITYRGKIAVRDMARALGYSQGQQDAWSKQI 513

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +      S        +             +++++ ++  L RH   H+ G+VI DRP+
Sbjct: 514  SSWSGPADSPDVEGIPPQ-------------VIDLANQVRNLPRHLGIHSGGMVICDRPI 560

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            + + P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+   ++VDL
Sbjct: 561  ADVCPVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDL 620

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   
Sbjct: 621  ARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGG 680

Query: 659  --VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
                Y  R+NG + ++  HP ++P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRA
Sbjct: 681  SVHPYIRRRNGVDPVLYDHPSMEPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRA 740

Query: 717  M-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            M  K+  E M + + RF  G    +G    +    +E L  FA++GF +SHA ++A + +
Sbjct: 741  MGSKRSTERMRRLRSRFYDGMRALHGAPDEVIDRTYEKLEAFANFGFPESHALSFASLVF 800

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             ++W K H+P  F AA +  +       +    DAR+  + +  P VN       + +  
Sbjct: 801  YSSWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHATLENAG 860

Query: 835  I--YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
                  L A++ +G   A  +++   A+ PF SL D  +R+          E+L  AGA 
Sbjct: 861  TEVRLGLGAVRHIGDDLAEKLVQERKANGPFTSLLDLTARLQLSVQ---QTEALATAGAF 917

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
             CFG SR           +         T + + +      +      +      +    
Sbjct: 918  GCFGMSRR----------EALWAAGAAATQRPDRLPGVGSSSH-----IPALPGMSELEL 962

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +    G     +P    +  L  MG+       +   G+ + +A  V  +Q+  T +
Sbjct: 963  AAADVWATGISPDSYPTQFLRDDLDAMGVVPAARLGSVPDGDRVLIAGAVTHRQRPGTAQ 1022

Query: 1012 GSRIGWVTFSEPAKEYEANF 1031
            G  + ++   +         
Sbjct: 1023 G--VTFLNLEDETGMVNVLC 1040


>gi|257888619|ref|ZP_05668272.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,141,733]
 gi|257824673|gb|EEV51605.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,141,733]
          Length = 1103

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/1032 (31%), Positives = 525/1032 (50%), Gaps = 64/1032 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +      IQPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEEIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++                 ++       GYQ+L++L SR  + +       
Sbjct: 63   IGLHLSYTYEE-------------KNYGLLAYAKDETGYQQLMKLSSRKMIQE------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
                 L ++     ++    ++  +  A  FN  +          + +F    Y+ L  +
Sbjct: 103  --KMALDDMIETDHLVFVVPATHSVSEA--FNKEEHFFSHWQFLLENVFTKDFYIGLSEN 158

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD--RPR 247
                  +  +  Q       PL A +    L +ED  A +V+  +   + +  +    P 
Sbjct: 159  TPN---QLPEWYQYVTKENYPLCALHPIASLQQEDLFALEVMKHIKEGSQMPLESLSAPL 215

Query: 248  VTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + + YL +  EM+  F +  L +A+     +A   SF  Q H  +LP +   +     K
Sbjct: 216  PSANGYLISEQEMIKRFEEAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPQG----K 271

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +    LR    + +E R+         + ++YR+RLD+EL+VI +M F  YFLIV D + 
Sbjct: 272  QAGEYLRELCYSQVEHRIVD-------YTKEYRERLDYELSVIHQMGFDDYFLIVWDVMA 324

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D   +
Sbjct: 325  FAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPDN 384

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN    
Sbjct: 385  RREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKI 444

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++ QA     +  E   A      L + +  LEGL RH STHAAG+VI DR L +LVP+
Sbjct: 445  TLT-QAYKTSRQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDRNLLELVPL 503

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
             R       +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  IP +
Sbjct: 504  QRGSDEAF-LTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGQEIRLKEIPLN 562

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  R
Sbjct: 563  DAKTLPLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNIDTFIAR 622

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+ 
Sbjct: 623  KKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKDV 682

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++K  F+SGA + G S+  AV ++E + KFA+YGFN+SHA AY+ + +Q A++K H+P
Sbjct: 683  LDEEKSHFVSGALQQGYSEKTAVTVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHP 742

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIK 843
              F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AIK
Sbjct: 743  GAFFTSLMNSVRHNTTKLKEYIAEARKNKLKLSSPSINQSNYSFELVNKEEIRFGLTAIK 802

Query: 844  GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            G+       ++     + PF S++ F  R+D + L   +L+SL   G  D    +R QL+
Sbjct: 803  GIRRDFVEDVLNERKQNGPFKSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQLM 862

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              L+   +   +     +    ++           +  E+ +      R + E+  LG Y
Sbjct: 863  LDLEGKIQNIVY-----SGGSLDLLGIMA------LKEEEVADYTLEERLKLEEEYLGVY 911

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             SGHP + +     ++ +    + +  I     + L  M+   ++ +T+KG  + +V  +
Sbjct: 912  LSGHPAEGF----DRLRLAKQVQLITDIVPNQPVNLLLMIKEVREIRTKKGELMAFVEGT 967

Query: 1022 EPAKEYEANFFP 1033
            + + E     FP
Sbjct: 968  DSSGEISVTVFP 979


>gi|226365695|ref|YP_002783478.1| error-prone DNA polymerase [Rhodococcus opacus B4]
 gi|226244185|dbj|BAH54533.1| error-prone DNA polymerase [Rhodococcus opacus B4]
          Length = 1084

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/1036 (27%), Positives = 473/1036 (45%), Gaps = 72/1036 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +  +  L  HS++S L+GA     ++++       AIA+TD +  +  + F++ A    
Sbjct: 57   STVPYAELHAHSAFSFLDGASPPEELVEEAVRLGLEAIALTDHDGFYGVVRFAEAAKELN 116

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ + G +L +D                    +++L    EGY+RL   ++  +L    K
Sbjct: 117  MRTVFGSELSLDD-----------------AHLLVLARGQEGYRRLSREIAAAHLAGGEK 159

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
              +R  L  L +       +LTG   G + +A        A  RL      F  DR+ V 
Sbjct: 160  GRLRYDLDRLADAAGGHWQILTGCRKGHVRQALADGGPDAAAARLRDLIDRFGADRVTVE 219

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK- 243
            L  H    D  R + + +LA  H L ++A+  + F           + AV     +    
Sbjct: 220  LTHHGVAEDAERNACLAELAQRHGLRVIASTAAHFAGPPRRRLAMAMAAVRARQSLDDAA 279

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++  EM  +F+  P+A+    E+   C+F L++ AP LP F   +    
Sbjct: 280  GYLAPAGGAHLRSGEEMAHLFAAYPDAVRGAAELGLECAFDLRLIAPQLPPFDVPDG--- 336

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E + LR   + G   R      A     + YR +++ EL +I  + F GYFL+V D 
Sbjct: 337  -HTEASWLRQLTMDGARRRYG----APADRPEAYR-QIEHELGIITGLNFPGYFLVVHDI 390

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + + K N+I +  GRGS A S   YA+ IT++DP+R  LLFERFL+P+R   PD D+D  
Sbjct: 391  VSFCKNNDI-LCQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLSPERDGPPDIDVDIE 449

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR+E I++V  KYG +  AQ+    + + K+++RD+ RAL     Q D   K +    
Sbjct: 450  SDRREEAIQHVYTKYGRQYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSKQVSRWG 509

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                           +EA    P    +LE++ ++EG  RH   H+ G+VI DRP++ + 
Sbjct: 510  GIG------------KEAGTDIPPA--VLELAAQIEGFPRHLGIHSGGMVICDRPIADVC 555

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+     ++  V Q++       GL+KFD LGL  L+ L   +D +A+   ++VDL+ + 
Sbjct: 556  PVEWARMANRSVLQWDKDDCAAVGLVKFDMLGLGMLSALHYMIDLVAEHKGIEVDLAQLD 615

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VV 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI       
Sbjct: 616  LSEEAVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVHP 675

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+N  E +   HP ++  LK T GV ++QEQ+MQ+A  ++G+S +EAD LRRAM  K
Sbjct: 676  YIRRRNKLEPVTYDHPSLEKALKRTLGVPLFQEQLMQMAVDVAGFSPAEADQLRRAMGSK 735

Query: 720  KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E+M++ + RF  G  + +GI   +A  I+E L  FA++GF +SH+ ++A + + ++W
Sbjct: 736  RSPEKMERLRGRFYQGMRELHGIGGDVADRIYEKLFAFANFGFPESHSQSFAALVFYSSW 795

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI--Y 836
             K H+P  F A  +  +       +    DAR+  +++    VN       V        
Sbjct: 796  FKLHHPAAFCAGLLRAQPMGFYSPQSLVADARRHGVRVHGADVNASLAHATVEAGGTEVR 855

Query: 837  YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L  ++ +GT  A  I+++  D  P+ S  D   RV+    +    ESL  AGALD FG
Sbjct: 856  LGLGEVRHIGTALAERIVDSRGDGGPYTSFLDLTGRVEL---STAQAESLATAGALDSFG 912

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR + L         A    ++R            G  +   TL   S          +
Sbjct: 913  LSRREALW----AAGAAAGERRDRLPG--------IGASTRAPTLPGMS---DLELAAAD 957

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +P +  +P L  +G+      +    G+ + +   V  +Q+  T  G  +
Sbjct: 958  VWATGVSPDTYPTEFLRPQLDALGVIPAAHLLDVPDGDRVLVGGAVTHRQRPATAAG--V 1015

Query: 1016 GWVTFSEPAKEYEANF 1031
             ++   +         
Sbjct: 1016 TFINLEDETGMVNVVC 1031


>gi|227550594|ref|ZP_03980643.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257897003|ref|ZP_05676656.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|293378695|ref|ZP_06624853.1| DNA polymerase III, alpha subunit [Enterococcus faecium PC4.1]
 gi|227180302|gb|EEI61274.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257833568|gb|EEV59989.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|292642623|gb|EFF60775.1| DNA polymerase III, alpha subunit [Enterococcus faecium PC4.1]
          Length = 1103

 Score =  819 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/1032 (31%), Positives = 525/1032 (50%), Gaps = 64/1032 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +      IQPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEEIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++                 ++       GYQ+L++L SR  + +       
Sbjct: 63   IGLHLSYTYEE-------------KNYGLLAYAKDETGYQQLMKLSSRKMIQE------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
                 L ++     ++    ++  +  A  FN  +          + +F    Y+ L  +
Sbjct: 103  --KMALDDMIETDHLVFVVPATHSVSEA--FNKEEHFFSHWQFLLENVFTKDFYIGLSEN 158

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD--RPR 247
                  +  +  Q       PL A +    L +ED  A +V+  +   + +  +    P 
Sbjct: 159  TPN---QLPEWYQYVTKENYPLCALHPIASLQQEDLFALEVMKHIKEGSQMPLESLSAPL 215

Query: 248  VTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + + YL +  EM+  F +  L +A+     +A   SF  Q H  +LP +   +     K
Sbjct: 216  PSANGYLISEQEMIKRFEEAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPQG----K 271

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +    LR    + +E R+         + ++YR+RLD+EL+VI +M F  YFLIV D + 
Sbjct: 272  QAGEYLRELCYSQVEHRIVD-------YTKEYRERLDYELSVIHQMGFDDYFLIVWDVMA 324

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D   +
Sbjct: 325  FAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPDN 384

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN    
Sbjct: 385  RREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKI 444

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++ QA     +  E   A      L + +  LEGL RH STHAAG+VI DR L +LVP+
Sbjct: 445  TLT-QAYKTSRQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDRNLLELVPL 503

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
             R       +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  IP +
Sbjct: 504  QRGSDEAF-LTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGQEIRLKEIPLN 562

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  R
Sbjct: 563  DAKTLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNIDTFIAR 622

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+ 
Sbjct: 623  KKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKDV 682

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++K  F+SGA + G S+  AV ++E + KFA+YGFN+SHA AY+ + +Q A++K H+P
Sbjct: 683  LDEEKSHFVSGALQQGYSEKTAVTVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHP 742

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIK 843
              F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AIK
Sbjct: 743  GAFFTSLMNSVRHNTTKLKEYIAEARKNKLKLSSPSINQSNYSFELVNKEEIRFGLTAIK 802

Query: 844  GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            G+       ++     + PF S++ F  R+D + L   +L+SL   G  D    +R QL+
Sbjct: 803  GIRRDFVEDVLNERKQNGPFKSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQLM 862

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              L+   +   +     +    ++           +  E+ +      R + E+  LG Y
Sbjct: 863  LDLEGKIQNIVY-----SGGSLDLLGIMA------LKEEEVADYTLEERLKLEEEYLGVY 911

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             SGHP + +     ++ +    + +  I     + L  M+   ++ +T+KG  + +V  +
Sbjct: 912  LSGHPAEGF----DRLRLAKQVQLITDIVPNQPVNLLLMIKEVREIRTKKGELMAFVEGT 967

Query: 1022 EPAKEYEANFFP 1033
            + + E     FP
Sbjct: 968  DSSGEISVTVFP 979


>gi|293571121|ref|ZP_06682160.1| DNA polymerase III subunit alpha [Enterococcus faecium E980]
 gi|291608803|gb|EFF38086.1| DNA polymerase III subunit alpha [Enterococcus faecium E980]
          Length = 1103

 Score =  819 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/1032 (31%), Positives = 526/1032 (50%), Gaps = 64/1032 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     GIQPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++                 ++       GYQ+L++L SR  + +       
Sbjct: 63   IGLHLSYTYEE-------------KNYGLLAYAKDETGYQQLMKLSSRKMIQE------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
                 L ++     ++    ++  +  A  FN  +          + +F    Y+ L  +
Sbjct: 103  --KMALDDMIETDHLVFVVPANHSVSEA--FNKEEHFFSHWQFLLENVFTKDFYIGLSEN 158

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD--RPR 247
               D+  E    Q       PL A +    L +ED  A +V+  +   + +  +    P 
Sbjct: 159  TP-DQLPEW--YQYVTKENYPLCALHPIASLQQEDLFALEVMKHIKEGSQMPLESLSAPL 215

Query: 248  VTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + + YL +  EM+  F +  L +A+     +A   SF  Q H  +LP +   +     K
Sbjct: 216  PSANGYLLSEQEMIKRFEEAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPQG----K 271

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +    LR    + +E R+         + ++YR+RLD+EL+VI +M F  YFLIV D + 
Sbjct: 272  QAGEYLRELCYSQVEHRIVD-------YTKEYRERLDYELSVIHQMGFDDYFLIVWDVMA 324

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D   +
Sbjct: 325  FAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPDN 384

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN    
Sbjct: 385  RREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKI 444

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++ QA     +  E   A      L + +  LEGL RH STHAAG+VI DR L +LVP+
Sbjct: 445  TLT-QAYKTSRQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDRNLLELVPL 503

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
             R       +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  IP +
Sbjct: 504  QRGSDEAF-LTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGQEIRLKEIPLN 562

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  R
Sbjct: 563  DAKTLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNIDTFIAR 622

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+ 
Sbjct: 623  KKGKEAIHYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKDV 682

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++K  F+SGA + G  +  AV ++E + KFA+YGFN+SHA AY+ + +Q A++K H+P
Sbjct: 683  LDEEKSHFVSGALQQGYLEKTAVTVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHP 742

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIK 843
              F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AIK
Sbjct: 743  GAFFTSLMNSVRHNTTKLKEYIAEARKNKLKLSSPSINQSNYSFELVNKEEIRFGLTAIK 802

Query: 844  GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            G+       ++     + PF S++ F  R+D + L   +L+SL   G  D    +R QL+
Sbjct: 803  GIRRDFVEDVLNERKQNGPFKSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQLM 862

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              L+   +   +     +    ++           +  E+ +      R + E+  LG Y
Sbjct: 863  LDLEGKIQNIVY-----SGGSLDLLGIMA------LKEEEVADYTLEERLKLEEEYLGVY 911

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             SGHP + +     ++ +    + +  I     + L  M+   ++ +T+KG  + +V  +
Sbjct: 912  LSGHPAEGF----DRLRLAKQVQLITDIVPNQPVNLLLMIKEVREIRTKKGELMAFVEGT 967

Query: 1022 EPAKEYEANFFP 1033
            + + E     FP
Sbjct: 968  DSSGEISVTIFP 979


>gi|307321595|ref|ZP_07600988.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
 gi|306892764|gb|EFN23557.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
          Length = 1087

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/1043 (26%), Positives = 472/1043 (45%), Gaps = 80/1043 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L V + +S L GA S   +          A+ + D N+L   +   + + A G++ 
Sbjct: 2    RYAELHVTTDFSFLRGASSAEELFATAKLMGIEALGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC                +       SI++  +    Y RL  L++    L +G+   
Sbjct: 62   VVGC----------------RLDLQDGMSILVYPTDRAAYSRLTRLLT----LGKGRGGK 101

Query: 130  RICLSWLQE--IGTEGLI-MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              C+    +  +  EGLI +L    +  +                    ++FGDR YV+L
Sbjct: 102  ANCIIHFDDVALYAEGLIGILVPNLADEVCAVQLRK-----------IAEVFGDRAYVSL 150

Query: 187  Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD- 244
              R R  D+ R  ++  LA  H L  + TN+ LF      +  DV+  +   T +     
Sbjct: 151  CLRRRPNDQLRLHELTNLAVKHRLKTIVTNDVLFHEHGRRQLQDVVTCIRTGTTIDDVGF 210

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  D YLK   EM  +F   PEAL  T+EI  RC F L+      P    +E     
Sbjct: 211  ERERHADRYLKPPEEMARLFPAYPEALARTMEIVERCRFSLEELVYQYP----EEALIPG 266

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L++    G+  R  +G  A         + +  EL +I  MK++ YFL V   +
Sbjct: 267  MTAQQSLQHYTWEGVRARYPEGLPAH------VEKTIRHELALIETMKYAPYFLTVFSIV 320

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  
Sbjct: 321  RYARSQGI-LCQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEH 379

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI+++   YGH++ A   T    +AK A+RDVG+AL +P   +  L   I     
Sbjct: 380  ERREEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALGLPEDLIKTLSSGIW---- 435

Query: 485  HPVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
               S      + + RE  L +P   RL   L+++Q+L G  RH   H  G V+    L  
Sbjct: 436  ---SWSETVGERQVRELGL-NPDDRRLTLTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDD 491

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600
            LVP+     +D  V +++   IE    +K D L L  LT + K+   +   +   +DL+ 
Sbjct: 492  LVPIEPATMADRQVIEWDKDDIEALKFMKVDVLALGMLTCMAKAFALISEHKHEDIDLAT 551

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            IP +D  TY ++    TLG FQ+ES      L  M+P    D++  V++ RPGPI  D +
Sbjct: 552  IPQEDPSTYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAIVRPGPIQGDMV 611

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R+ GKEK+    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M 
Sbjct: 612  HPYLRRREGKEKVEYPTPELEAVLHKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMA 671

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K    + + K++ ++G  ++G ++  A   F  L  F  YGF +SHAA++A+I+Y + 
Sbjct: 672  TFKFTGGVSRFKDKLVNGMIRDGYTQEFAEKTFSQLEGFGSYGFPESHAASFALIAYASN 731

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------G 831
            ++K H+P  F AA +  +        +  +DAR+  +++ P  +N    D  +      G
Sbjct: 732  YIKCHFPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSRWDCMLEPIDGSG 791

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             + +   +  ++G+ T  A  I+ A AD+PF S++D   R     +    L  L  A A 
Sbjct: 792  GHAVRLGMRLVRGLATADAARIVAARADEPFTSVDDMWRR---SGVPVASLVELAEADAF 848

Query: 892  -DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
                G  R   L ++  ++     +     ++     A ++     ++ L + +  ++ V
Sbjct: 849  LPSLGLERRDALWAIKALRDEPLPLFTAAADREARAIAEQQ---EPEVKLRQMTDGHNVV 905

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +    G     HPL   +  L K  I     ++    G  + +A +V+ +Q+  + 
Sbjct: 906  ---EDYSHTGLTLREHPLRFMRDDLAKRRIVTCARAMTAHDGQWLIVAGLVLVRQRPGSV 962

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
            KG  + ++T  +         +P
Sbjct: 963  KG--VMFITIEDETGIANIVVWP 983


>gi|330891559|gb|EGH24220.1| error-prone DNA polymerase [Pseudomonas syringae pv. mori str.
            301020]
          Length = 1031

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/1042 (26%), Positives = 464/1042 (44%), Gaps = 84/1042 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  +  L   S++S   GA S   + ++ +     A+AITD   L   +   Q + + G+
Sbjct: 2    TSEYAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASISTGL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
              IIG ++ I+                  P  VLLV +  GY+ L +L++        K 
Sbjct: 62   PLIIGSEMHIENG----------------PKAVLLVESQTGYEALCKLITVARRR-ARKG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+      E  ++GL+         I        +Q         ++ F +RL++ ++
Sbjct: 105  EYRLLREDF-EPSSDGLLA--------IWLPDIEGDAQACLAHGRWLRERFAERLWLGVE 155

Query: 188  RHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             HRG  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V++    
Sbjct: 156  LHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEAGHL 215

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +L+    +   + D    L  +V IARRC+F L+      P  +  +     +
Sbjct: 216  LFANGERHLRPLDALAEHYPDW--LLAESVRIARRCTFDLKQLKYEYPHELVPKG----Q 269

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     G   R   G           R +++ EL +I   KF  YFL V D ++
Sbjct: 270  TPTSWLRELTERGARKRWPNGLTPAT------RAQVEKELALITEKKFDSYFLTVHDIVE 323

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF   
Sbjct: 324  FARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERNEPPDIDVDFEHA 382

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L          
Sbjct: 383  RREEVIQYIFRRYGRGRAALTAVASTYHGSGAVRDVAKVLGLPPDQINALADAFSRWS-- 440

Query: 486  PVSLQAIADDSRFREARLAD--PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                 ++    R RE       P + R+L ++ +L G  RH S H  G VI + PL  LV
Sbjct: 441  ----DSLPSPERLREYGFDADMPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLV 496

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602
            P+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P
Sbjct: 497  PVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADLP 556

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             DD +TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  
Sbjct: 557  GDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHP 616

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+N +E I    P +  + + T GV ++QEQVM++A + +GY+  EAD LRRAM   
Sbjct: 617  YLRRRNKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAAGYTPGEADELRRAMAAW 675

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    ++  +ER  +G   N      A  IFE +  F  YGF +SHAA++A+++Y + W+
Sbjct: 676  KRHGGLEPHRERLRTGMLNNDYDVDFADRIFEQIKGFGSYGFPESHAASFALLTYASCWL 735

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------- 832
            K H P  F  A +           +  QDAR+ +I+I P  V     D  +         
Sbjct: 736  KCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDST 795

Query: 833  --NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                I   L  ++G     AR I  A + + F    D   R     L+ R  E+L  +GA
Sbjct: 796  RNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLTLRA---GLDARAAEALADSGA 852

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            L      R +    +  +                 +F ++  +   ++TL    V   + 
Sbjct: 853  LRGLIGHRHRARWEVAGV------------EAQRPLF-NDLPSEDTQVTLPLPRV---AE 896

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +   LG     HPL + +  L     +  ++ ++      + +A +V+ +Q+  T 
Sbjct: 897  DLMADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENDRTLSVAGLVIGRQRPGTA 956

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G  + +VT  +         +
Sbjct: 957  SG--VTFVTLEDEFGMVNVVVW 976


>gi|255039130|ref|YP_003089751.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053]
 gi|254951886|gb|ACT96586.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053]
          Length = 1074

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/1034 (25%), Positives = 461/1034 (44%), Gaps = 68/1034 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  LQV ++++ L G      ++ +       AIAITD N L   +     A     + 
Sbjct: 2    NYTELQVTTNFTFLRGGSHPEELVGQAIELGYKAIAITDRNTLAGVVRAHAAAKGKDFRI 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I  C                +      PS++   +    Y  L  L++   L  + K   
Sbjct: 62   IPAC----------------RLDLLDGPSLLAYPTHQAAYSHLSALLTEGNLRTE-KGKC 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN-LQR 188
             +  + +     EG+  +    +   +   F  S    E+ L  +++  G  LY+  ++ 
Sbjct: 105  DLYKADVYRYA-EGIRFIAVPPAALNESFDFDPSF---EQNLREYRRALGKSLYLGAIRS 160

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
            ++G D  +  ++ QL+   ++PLVATN+  + + +  E  DVL  +     +     R  
Sbjct: 161  YQGDDMKKLYRLDQLSQHLDIPLVATNDVHYHNFQRRELQDVLTCIREKCTIYNAGFRLH 220

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YLK  +EM  +F   PEA+E T EIA  C F L     + P  +  E     +  
Sbjct: 221  ENAERYLKPAAEMQRLFMKFPEAIERTQEIADACQFSLSSLKYVYPEELTTEG----RTP 276

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL +    G + R  +G         D   ++  E   +  M ++ YFL V D +++A
Sbjct: 277  MEELIHLTWLGAKKRFPKGI------RPDIHAKILHEFKFVEEMNYAAYFLTVYDIVRFA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I +  GRGS A SV  Y L IT +DP+   LLFERF++  R   PD D+DF  +RR
Sbjct: 331  NEQKI-LCQGRGSAANSVICYCLGITSVDPIEIDLLFERFISSSRNEPPDIDVDFEHERR 389

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++Y+ NKYG +R   + T   +  K A+RDV +A+ M    + RL   +        
Sbjct: 390  EEVMQYIYNKYGRDRAGIVATVTQVHQKGAVRDVAKAMGMSMDAISRLSSSLWEFTDEWF 449

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              + I +          DP + ++L+++++  G  R    H  G VI    LS L P+  
Sbjct: 450  DGKLITEHG----FNPNDPHLIKILDLTRQYMGFPRQLGQHTGGFVITQGKLSDLCPILN 505

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                +    ++N   I+  G +K D L L  LT ++K+ D L Q   ++ +L+ IP DD 
Sbjct: 506  ARMENRTCIEWNKDDIDTLGFLKIDVLALGMLTCIRKAFDLLKQHYDIEHNLASIPPDDQ 565

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNR 664
            + Y ++    T+G+FQ+ES   +  L  ++P C  D++  V++ RPGPI  D +  Y  R
Sbjct: 566  DVYDMICKADTIGVFQIESRAQQSMLPRLKPRCFYDLVIEVAIVRPGPIQGDMVHPYLRR 625

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKE 723
            +N +E++V     ++ +LK+T GV ++QE  M+IA + +G++ +EAD LRR+M   K K 
Sbjct: 626  RNDEEEVVYPKKELEDILKKTLGVPLFQEHAMKIAIVAAGFTATEADELRRSMATFKSKG 685

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  +++ ++G  KNG  K  A  IF+ L  F  YGF +SHAA++A++ Y ++W+K H+
Sbjct: 686  IVNTLRDKLVNGMVKNGYEKDFAERIFKQLEGFGSYGFPESHAASFALLVYVSSWIKCHH 745

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYS 838
            P  F AA +  +     +  +   DAR  ++++    +N    D  +         +   
Sbjct: 746  PDVFAAALLNSQPMGFYRPAQIVIDARNHDVKVREIDINHSFWDNTLENIPGEQCALRLG 805

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
               IKG+     + +  A   +PF  +           ++   LE L  A A    G+ R
Sbjct: 806  FRQIKGLREEEMQILTNART-QPFTHIHQLLE----AGISHTALEKLADADAFRSIGFDR 860

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             Q             W      ++   +FA +       + L + ++   +    ++   
Sbjct: 861  RQAF-----------WEASALADRPMGLFAGQPSPREADVELPQMTL---AEHVIHDYAT 906

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
                   HP+   +  L  +G    +          +++A +V+ +Q+  T  G  I ++
Sbjct: 907  TSLSLKQHPVSFVREQLDALGAVPSKALELIPDSRIVKVAGLVLVRQRPGTASG--ICFI 964

Query: 1019 TFSEPAKEYEANFF 1032
            T  +         F
Sbjct: 965  TVEDETGTANLVVF 978


>gi|257880259|ref|ZP_05659912.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,230,933]
 gi|257883058|ref|ZP_05662711.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,502]
 gi|294623223|ref|ZP_06702097.1| DNA polymerase III subunit alpha [Enterococcus faecium U0317]
 gi|257814487|gb|EEV43245.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,230,933]
 gi|257818716|gb|EEV46044.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,502]
 gi|291597365|gb|EFF28542.1| DNA polymerase III subunit alpha [Enterococcus faecium U0317]
          Length = 1104

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/1033 (31%), Positives = 523/1033 (50%), Gaps = 65/1033 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++                 ++       GYQ+L++L SR  + +       
Sbjct: 63   IGLHLSYTYEE-------------KNYGLLAYAKDEIGYQQLMKLSSRKMIQE------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
                 L E+     +     ++  +  A  FN             + +F    Y+ L  +
Sbjct: 103  --KLELAEMTETDHLAFVVPANHSVSEA--FNKEDNFFGHWQFLLENVFTRNFYIGLTEN 158

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR---P 246
               D+  E    Q        L A +    L +E+  A +V+  +   + +  ++     
Sbjct: 159  T-PDQLPEW--YQYVIKENYSLCALHPIASLQQEELFALEVMKHIKEGSQIPLENLSASL 215

Query: 247  RVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             +T + YL +  EM+  F  + L +A+     +A   SF  Q H  +LP +         
Sbjct: 216  PLTANVYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG---- 271

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K+    LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFLIV D +
Sbjct: 272  KQAGEYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFLIVWDVM 324

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D   
Sbjct: 325  AFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPD 384

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN   
Sbjct: 385  NRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLK 444

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              ++ QA     +  E   A      L + +  LEGL RH STHAAG+VI D+ L +LVP
Sbjct: 445  ITLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLLELVP 503

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            + R       +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  IP 
Sbjct: 504  LQRGSDEAF-LTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLKEIPL 562

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  
Sbjct: 563  NDAKTLLLFQRGETSGVFQFESAGIRNVLRRLDPENIEDIAAVNALYRPGPMQNIDTFIA 622

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+
Sbjct: 623  RKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKD 682

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +D++K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A++K H+
Sbjct: 683  VLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHH 742

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAI 842
            P  F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AI
Sbjct: 743  PGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFGLTAI 802

Query: 843  KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KG+       I+     + PF S++ F  R+D + L   +L+SL   G  D    +R QL
Sbjct: 803  KGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQL 862

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            +  L+   +   +     +    ++           +  E+ +      R + E+  LG 
Sbjct: 863  MLDLEGKIQNIVY-----SGGSLDLLGIMA------LKEEEVADYTLEERLKLEEEYLGI 911

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y SGHP + +     ++ +    + +  I     + L  M+   ++ +T+KG  + +V  
Sbjct: 912  YLSGHPAEGF----DRLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMAFVEG 967

Query: 1021 SEPAKEYEANFFP 1033
            ++ + E     FP
Sbjct: 968  TDSSGEISVTVFP 980


>gi|149276053|ref|ZP_01882198.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39]
 gi|149233481|gb|EDM38855.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39]
          Length = 1074

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/1036 (26%), Positives = 459/1036 (44%), Gaps = 70/1036 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  LQV +++S L GA     ++    A     IAITD N L   +          I  
Sbjct: 2    SYTELQVTTNFSFLRGASHPEEMVAHAYALGYKKIAITDHNTLAGVVRAHTATKGKEISI 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I  C                +      PS++   +    Y RL  L+S+  L  + K   
Sbjct: 62   IPAC----------------RLNLLDGPSLLAYPTDMAAYTRLSALLSKGNLRAE-KGDC 104

Query: 130  RICLSWLQEIGTEGL--IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             +  + + E   EG+  I++      P +    F+     ++ L  +++  G+ LY+   
Sbjct: 105  HLYKTDVYE-HAEGMKFIVIP-----PQELNTLFDFDAAFKQDLTEYRQALGNSLYLAAT 158

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
            R ++G D  +  ++ QL+    +P+ ATN+  +      E  DVL  V     +     R
Sbjct: 159  RAYQGNDLKKMYRIAQLSADLHIPMAATNDVYYHDTSRRELQDVLTCVREKCTIHTAGFR 218

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +LK   EM+ +F   PEA+ +  EIA  C F L     + P    +E     +
Sbjct: 219  LHKNAERHLKPIDEMLRLFRQYPEAIRHAQEIADACEFSLSTLKYVYP----EELTTDGR 274

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + EL + A  G   R            +     + +EL  +  M ++ YFL V D ++
Sbjct: 275  TPQQELTHLAWEGANERYENNI------PESISAAIRYELKFMEEMNYASYFLTVYDIVR 328

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A++  I +  GRGS A S   Y L IT +DP +F LLFERF++  R   PD D+DF  +
Sbjct: 329  FARQQGI-LCQGRGSAANSTVCYCLGITAVDPTKFELLFERFISSARNEPPDIDVDFEHE 387

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+ NKYG +R A + T      K A+RDVG+A+ +    + RL   I      
Sbjct: 388  RREEVIQYIYNKYGRDRAAIVATVTQQHKKGAIRDVGKAMGLSVDTISRLSSAIWEFTED 447

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                 +I +    +     DP + ++L+++ ++ G  R    H  G VI    L+ L P+
Sbjct: 448  WFERDSILE----KGLNPDDPHLRKVLQLTGQMIGFPRQLGQHTGGFVITQGKLTDLCPI 503

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFD 604
                  +    ++N   I+  G +K D L L  LT ++K  D   +   +   L+ +P D
Sbjct: 504  LNARMDNRTNIEWNKDDIDALGFLKIDVLALGMLTCIRKCFDLAKKHHQRDLTLANVPQD 563

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D E Y +++   TLG+FQ+ES   +  L  ++P C  D++  V++ RPGPI  D +  Y 
Sbjct: 564  DPEVYQMISHADTLGVFQIESRAQQSMLPRLRPKCFYDLVIEVAIVRPGPIQGDMVHPYL 623

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+NG+EK       +  +LK T GV ++QEQ M+IA + +G++ +EAD LRR+M   K+
Sbjct: 624  RRRNGEEKEEYPSEALREILKRTLGVPLFQEQAMKIAIVAAGFTPTEADELRRSMATFKV 683

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  +  QK++ I G   NG     A  IF+ L  F  YGF +SHAA++A++ Y ++W+K 
Sbjct: 684  KGMVSTQKKKLIEGMIANGYEAAFAERIFKQLEGFGSYGFPESHAASFALLVYVSSWIKC 743

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIY 836
            H P  F A  +        +  +   DA++  +++    VN    D  +       + + 
Sbjct: 744  HLPDVFAAGLLNSMPMGFYQPAQIVIDAKKHGVEVREADVNHSDWDNLLEEKSGDWHAMR 803

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
                 IKG+       +++A    P+ ++ + C       +++  LE L  A A    G 
Sbjct: 804  LGFRQIKGLAEDEILALIQARTT-PYKNIHELCE----AGVSQSTLEKLADADAFRSMGL 858

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R Q L  +  +Q            +   +F  +      +  +E   +  +      + 
Sbjct: 859  DRRQALWEVSALQD-----------RPIALFQGQDSESKSEPQIE-LPLMTAGEHVVQDY 906

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
                     HP+   +  LR + +    E      G  +++A +V+ +Q+  T KG  + 
Sbjct: 907  ASTSLSLKAHPVSFVREQLRLLRVVSTGELSEIKDGTPLKVAGLVLVRQRPGTAKG--VC 964

Query: 1017 WVTFSEPAKEYEANFF 1032
            ++T  +         F
Sbjct: 965  FITIEDETGFSNLVVF 980


>gi|293556333|ref|ZP_06674915.1| DNA polymerase III subunit alpha [Enterococcus faecium E1039]
 gi|291601501|gb|EFF31771.1| DNA polymerase III subunit alpha [Enterococcus faecium E1039]
          Length = 1104

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/1033 (31%), Positives = 524/1033 (50%), Gaps = 65/1033 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++                 ++       GYQ+L++L SR  + +       
Sbjct: 63   IGLHLSYTYEE-------------KNYGLLAYAKDEIGYQQLMKLSSRKMIQE------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
                 L E+     +     ++  +  A  FN             + +F    Y+ L  +
Sbjct: 103  --KLELAEMTETDHLAFVVPANHSVSEA--FNKEDNFFGHWQFLLENVFTRNFYIGLTEN 158

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR---P 246
               D+  E     +   +   L A +    L +E+  A +V+  +   + +  ++     
Sbjct: 159  T-PDQLPEWYHYVIKENYS--LCALHPIASLQQEELFALEVMKHIKDGSQIPLENLSASL 215

Query: 247  RVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             +T + YL +  EM+  F  + L +A+     +A   SF  Q H  +LP +         
Sbjct: 216  PLTANGYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG---- 271

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K+    LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFLIV D +
Sbjct: 272  KQAGEYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFLIVWDVM 324

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D   
Sbjct: 325  AFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPD 384

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN   
Sbjct: 385  NRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLK 444

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              ++ QA     +  E   A      L + +  LEGL RH STHAAG+VI D+ L +LVP
Sbjct: 445  ITLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLLELVP 503

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            + R       +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  IP 
Sbjct: 504  LQRGSDEAF-LTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLKEIPL 562

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D +T  L     T G+FQ ES+G+R  L  + P+ IED+ A+ +LYRPGP+ NI  +  
Sbjct: 563  NDAKTLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDVAAVNALYRPGPMQNIDTFIA 622

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+
Sbjct: 623  RKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKD 682

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +D++K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A++K H+
Sbjct: 683  VLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHH 742

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAI 842
            P  F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AI
Sbjct: 743  PGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKKEIRFGLTAI 802

Query: 843  KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KG+       I+     + PF S++ F  R+D + L   +L+SL   G  D    +R QL
Sbjct: 803  KGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQL 862

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            +  L+   +   +     +    ++           +  E+ +      R + E+  LG 
Sbjct: 863  MLDLEGKIQNIVY-----SGGSLDLLGIMA------LKEEEVADYTLEERLKLEEEYLGI 911

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y SGHP + +     ++ +    + +  I     + L  M+   ++ +T+KG  + +V  
Sbjct: 912  YLSGHPAEGF----DRLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMAFVEG 967

Query: 1021 SEPAKEYEANFFP 1033
            ++ + E     FP
Sbjct: 968  TDSSGEISVTVFP 980


>gi|206479930|ref|YP_002235441.1| putative DNA polymerase subunit alpha [Burkholderia cenocepacia
            J2315]
 gi|195945086|emb|CAR57711.1| putative DNA polymerase alpha subunit [Burkholderia cenocepacia
            J2315]
          Length = 1049

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/1035 (27%), Positives = 471/1035 (45%), Gaps = 59/1035 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A +A + 
Sbjct: 10   PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKSANMP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    +   D             +  +   L    +GY  L E +S   +  + K S
Sbjct: 70   LIIGSHFQLTAADG-----------SSALAFTALAMNRDGYGNLCEFISLGRMRGK-KGS 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    +         +        I    F  + Q  + ++  F ++FGDR ++ L  
Sbjct: 118  YRLAPLDVDHPEAPYAHLRGLPDCLAILSPDFPANEQRLDAQVEWFARVFGDRAWIALTL 177

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H R  D      + ++A  H +P+VAT+  L          DVL  +     V++     
Sbjct: 178  HARAMDDIHRGVLERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGRPVTECGYEL 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  + +++     ALE TV +ARRC+F L       P  +     D    
Sbjct: 238  APNAERHLRSRLRLANLYP--AGALEETVRVARRCTFSLDDLKYEYPDELVPAGTD---- 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR +   G   R   G         D + +++ EL +IA M +  YFL V D +Q+
Sbjct: 292  PATYLREQTYIGARRRFPAGI------PVDVQAQIEHELQLIADMHYEAYFLTVYDIVQF 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I +  GRGS A S   Y L +T++DP R S+LFERF++ +R S PD D+DF   +
Sbjct: 346  AREQGI-LCQGRGSAANSAVCYCLGVTEVDPSRQSMLFERFISKERNSPPDIDVDFEHQK 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+ V++Y+  KYG +R A      + + ++ALR+ G+AL +  + V+R+ K      +  
Sbjct: 405  REIVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDTAIVERVAKQHHWFDSRA 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              LQ  A+     EA    P   +    + +L G  RH S H+ G VI    L++LVP+ 
Sbjct: 465  DLLQRFAEAGLDPEA----PLNQQWAAFAAQLLGYPRHLSQHSGGFVISRGKLTRLVPVE 520

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                 D  + Q++   IE  G++K D L L  L++++++LD +  +RG   +L  IP  D
Sbjct: 521  NAAMEDRSIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISEKRGETFELQDIPAQD 580

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
              TY +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGP+   +   +  
Sbjct: 581  KATYDMLCEGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQGGMVHPFLR 640

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+ G E +      ++  L  T GV I+QEQVMQ+A L +G+S  EAD LRRAM   K K
Sbjct: 641  RRQGLEPVTFPSEGMEKALARTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKRK 700

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              ++   ER +SG  + G  +  A +IF  +  F +YGF +SHAA++A++ Y +AW++ H
Sbjct: 701  GGLEPYHERLVSGMLERGYDREFAESIFAQIKGFGEYGFPESHAASFALLVYSSAWLRRH 760

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI----YYS 838
             P  FLAA +  +        +  QDAR+  ++++P  VN    D  +  +         
Sbjct: 761  EPAVFLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSAIEGSTTSAPVRLG 820

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             + ++G+    A  I  A A +PF  + D   R    + + +VL              +R
Sbjct: 821  FSLLRGMREDVAGRIELARAARPFVDVADLARRAQLDRHDLQVL--------------AR 866

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
               L+SL    + A            ++    +   +    L + S  +  V    + R 
Sbjct: 867  ANALRSLAGGNRRAALWLAAAAVPDRDLLRGTERDDAV-PALPQASEGHEIV---TDYRA 922

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +GF    HPL + +  L    ++  E+      G   R   +V  +Q+  T  G  + ++
Sbjct: 923  MGFTLGRHPLALLRDRLALDRLQSAEQLATLRSGQLARACGLVTVRQRPGTANG--VLFM 980

Query: 1019 TFSEPAKEYEANFFP 1033
            T  +   +     +P
Sbjct: 981  TLEDETGQVNVILWP 995


>gi|261208961|ref|ZP_05923366.1| DNA polymerase III alpha subunit [Enterococcus faecium TC 6]
 gi|289565227|ref|ZP_06445679.1| DNA polymerase III alpha subunit [Enterococcus faecium D344SRF]
 gi|294615026|ref|ZP_06694915.1| DNA polymerase III subunit alpha [Enterococcus faecium E1636]
 gi|260077000|gb|EEW64722.1| DNA polymerase III alpha subunit [Enterococcus faecium TC 6]
 gi|289163048|gb|EFD10896.1| DNA polymerase III alpha subunit [Enterococcus faecium D344SRF]
 gi|291592157|gb|EFF23777.1| DNA polymerase III subunit alpha [Enterococcus faecium E1636]
          Length = 1104

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/1033 (31%), Positives = 524/1033 (50%), Gaps = 65/1033 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++                 ++       GYQ+LI+L SR  + +       
Sbjct: 63   IGLHLSYTYEE-------------KNYGLLAYAKDEIGYQQLIKLSSRKMIQE------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
                 L E+     +     ++  +  A  FN             + +F    Y+ L  +
Sbjct: 103  --KLELAEMTETDHLAFVVPANHSVSEA--FNKEDNFFGHWQFLLENVFTRNFYIGLIEN 158

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR---P 246
               D+  E    Q        L A +    L +E+  A +V+  +   + +  ++     
Sbjct: 159  T-PDQLPEW--YQYVIKENYSLCALHPIASLQQEELFALEVMKHIKDGSQIPLENLSASL 215

Query: 247  RVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             +T + YL +  EM+  F  + L +A+     +A   SF  Q H  +LP +         
Sbjct: 216  PLTANGYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG---- 271

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K+    LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFLIV D +
Sbjct: 272  KQAGEYLRELCYSQVERRITN-------YTKEYQERLDYELSVIHQMGFDDYFLIVWDVM 324

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D   
Sbjct: 325  AFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPD 384

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN   
Sbjct: 385  NRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLK 444

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              ++ QA     +  E   A      L + +  LEGL RH STHAAG+VI D+ L +LVP
Sbjct: 445  ITLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLLELVP 503

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            + R    +  +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  IP 
Sbjct: 504  LQRGS-DEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLKEIPL 562

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  
Sbjct: 563  NDAKTLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNIDTFIA 622

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+
Sbjct: 623  RKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKD 682

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +D++K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A++K H+
Sbjct: 683  VLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHH 742

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAI 842
            P  F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AI
Sbjct: 743  PGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFGLTAI 802

Query: 843  KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KG+       I+     + PF S++ F  R+D + L   +L+SL   G  D    +R QL
Sbjct: 803  KGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQL 862

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            +  L+   +   +     +    ++           +  E+ +      R + E+  LG 
Sbjct: 863  MLDLEGKIQNIVY-----SGGSLDLLGIMA------LKEEEVADYTLEERLKLEEEYLGI 911

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y SGHP + +     ++ +    + +  I     + L  M+   ++ +T+KG  + +V  
Sbjct: 912  YLSGHPAEGF----DRLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMAFVEG 967

Query: 1021 SEPAKEYEANFFP 1033
            ++ + E     FP
Sbjct: 968  TDSSGEISVTVFP 980


>gi|69247357|ref|ZP_00604321.1| DNA polymerase III alpha subunit [Enterococcus faecium DO]
 gi|257891358|ref|ZP_05671011.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260560443|ref|ZP_05832617.1| DNA polymerase III alpha subunit [Enterococcus faecium C68]
 gi|314937961|ref|ZP_07845274.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133a04]
 gi|314940993|ref|ZP_07847895.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133C]
 gi|314947550|ref|ZP_07850962.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0082]
 gi|314953129|ref|ZP_07856084.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133A]
 gi|314993023|ref|ZP_07858417.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133B]
 gi|314995294|ref|ZP_07860404.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133a01]
 gi|68194880|gb|EAN09352.1| DNA polymerase III alpha subunit [Enterococcus faecium DO]
 gi|257827718|gb|EEV54344.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260073445|gb|EEW61773.1| DNA polymerase III alpha subunit [Enterococcus faecium C68]
 gi|313590479|gb|EFR69324.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133a01]
 gi|313592474|gb|EFR71319.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133B]
 gi|313594797|gb|EFR73642.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133A]
 gi|313600185|gb|EFR79028.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133C]
 gi|313642684|gb|EFS07264.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133a04]
 gi|313645993|gb|EFS10573.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0082]
          Length = 1104

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/1033 (31%), Positives = 523/1033 (50%), Gaps = 65/1033 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++                 ++       GYQ+L++L SR  + +       
Sbjct: 63   IGLHLSYTYEE-------------KNYGLLAYAKDEIGYQQLMKLSSRKMIQE------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
                 L E+     +     ++  +  A  FN             + +F    Y+ L  +
Sbjct: 103  --KLELAEMTETDHLAFVVPANHSVSEA--FNKEDNFFGHWQFLLENVFTRNFYIGLTEN 158

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR---P 246
               D+  E    Q        L A +    L +E+  A +V+  +   + +  ++     
Sbjct: 159  T-PDQLPEW--YQYVIKENYSLCALHPIASLQQEELFALEVMKHIKEGSQIPLENLSASL 215

Query: 247  RVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             +T + YL +  EM+  F  + L +A+     +A   SF  Q H  +LP +         
Sbjct: 216  PLTANVYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG---- 271

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K+    LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFLIV D +
Sbjct: 272  KQAGEYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFLIVWDVM 324

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D   
Sbjct: 325  AFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPD 384

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN   
Sbjct: 385  NRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLK 444

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              ++ QA     +  E   A      L + +  LEGL RH STHAAG+VI D+ L +LVP
Sbjct: 445  ITLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLLELVP 503

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            + R       +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  IP 
Sbjct: 504  LQRGSDEAF-LTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLKEIPL 562

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  
Sbjct: 563  NDAKTLLLFQRGETSGVFQFESAGIRNVLRRLDPENIEDIAAVNALYRPGPMQNIDTFIA 622

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+
Sbjct: 623  RKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKD 682

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +D++K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A++K H+
Sbjct: 683  VLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHH 742

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAI 842
            P  F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AI
Sbjct: 743  PGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFGLTAI 802

Query: 843  KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KG+       I+     + PF S++ F  R+D + L   +L+SL   G  D    +R QL
Sbjct: 803  KGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQL 862

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            +  L+   +   +     +    ++           +  E+ +      R + E+  LG 
Sbjct: 863  MLDLEGKIQNIVY-----SGGSLDLLGIMA------LKEEEVADYTLEERLKLEEEYLGI 911

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y SGHP + +     ++ +    + +  I     + L  M+   ++ +T+KG  + +V  
Sbjct: 912  YLSGHPAEGF----DRLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMAFVEG 967

Query: 1021 SEPAKEYEANFFP 1033
            ++ + E     FP
Sbjct: 968  TDSSGEISVTVFP 980


>gi|303233203|ref|ZP_07319876.1| putative DNA polymerase III subunit alpha [Atopobium vaginae
            PB189-T1-4]
 gi|302480788|gb|EFL43875.1| putative DNA polymerase III subunit alpha [Atopobium vaginae
            PB189-T1-4]
          Length = 1302

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/1051 (30%), Positives = 518/1051 (49%), Gaps = 94/1051 (8%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I PI GC++++     ++     +    T   + LLV   +GY  L++LVS         
Sbjct: 125  ITPIFGCEVNLIPDSCIE-----RGTTQTRYHLPLLVKNNQGYHNLMKLVSEASNK-MMY 178

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R+ L  L+    EGLI L+G   G I R    ++   AE      + +FGD  Y+ L
Sbjct: 179  YRPRVTLDMLRTYH-EGLICLSGCYQGVIARMVVQHAMDEAEGWARALQDIFGDDFYLEL 237

Query: 187  QRH--------RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            Q H           +      +  +     +  VATN++ + S +D E  D+L  ++  T
Sbjct: 238  QDHNISLDSWGGMTETDIAHTIYDMGKKLGIATVATNDNHYFSRDDVETRDLLSCISAGT 297

Query: 239  VVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             + +  +  +   ++Y+K + EM S+FS  P+A+E T  IA++C+F L      LP+F  
Sbjct: 298  HLDESYQTTLPGSEYYMKTQEEMSSLFSWAPDAIEQTYAIAQKCNFELDWTNMYLPKFP- 356

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                   +  E+  R +  AGL  +  +       +  + ++R ++E  VI    F+ YF
Sbjct: 357  --GLREGESSEDRFRAECEAGLARKYGKDWEHTVINGVNVKERFEYEYGVICFKGFADYF 414

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV ++++WAK++ I VGPGRGS AG++ AYA+ IT  DPL   L+FERFL+P+R  MPD
Sbjct: 415  LIVQEYVRWAKEHGIGVGPGRGSAAGAIVAYAMDITTFDPLENGLMFERFLSPERTEMPD 474

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  +RR EV+++V+  YG ERV  +IT+ +++AK A+ D  R L  P S   +L K
Sbjct: 475  IDMDFDDERRLEVVQHVRELYGSERVCHVITYSTIKAKQAINDAARVLNYPVSLGQKLSK 534

Query: 478  LIPNDPAHPVSL-------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            +I NDP   +S        +    +  F +    +    R+++ ++ +EGL R    HA 
Sbjct: 535  MISNDPKVKLSYVLEKTDGKEDMYNPDFLKEYETNADERRIIDAARAIEGLTRGEGVHAC 594

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
             ++I   P++  VP   D +  + +TQ+    +   GL+K DFLGL+TLT++ K+L+ + 
Sbjct: 595  AVLIAPTPVNDHVPTKLDTKGGVEITQYEGHSVADMGLLKMDFLGLRTLTVISKTLENIR 654

Query: 591  QRGV-----------------------KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
             R                          +D + I F D   Y LL++  T G+FQ+ES G
Sbjct: 655  TRYPDLSLIDTFSPTVKAALKEGATSIDIDPAKIDFSDPAIYKLLSSGHTAGVFQVESEG 714

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
            M   ++ M+P     I+AL++LYRPGP+   +V  Y NR NG+E +V     +  +L ET
Sbjct: 715  MTATIKNMKPREFRQIVALIALYRPGPLGAGMVTSYINRMNGREPVVFYDDRLSEILDET 774

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEAD-VLRRAMGKKIKEEM------------DKQKERF 732
             G I+YQEQVMQI+  +SG+S  E+D  +R+ + KK    +            +   + +
Sbjct: 775  YGTIVYQEQVMQISVKMSGFSKGESDSRIRKPVAKKKIALLTSTIFHWENGKDETTYDHW 834

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            + GA  NG  + +A  I++ + +FA Y FNKSH+A YA++  QTAW+K H+P E++A+ +
Sbjct: 835  MGGAKANGYKEDVAQKIWDDVLEFASYAFNKSHSAGYAILVMQTAWLKAHFPREYMASVL 894

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            T  M   +KI  +        I I+PP +N    DF      + +  A I+GVG      
Sbjct: 895  TSYMGKTDKITHYISACHHEGIDILPPDINESRRDFTATAQGVRFGFAGIRGVGEQVGEA 954

Query: 853  IMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD----- 906
            IM+  AD  PF  L DF +R DS   NRRV+E+L+ AGA D  GY R QL+  +D     
Sbjct: 955  IMQERADHGPFLHLHDFVNRSDSACANRRVVEALIKAGAFDASGYPRCQLMGFVDKNNPK 1014

Query: 907  NIQKYAQWVEKNRTNKHENIF---AHEKGTFSDK--ITLEKFSVENSSVRFENEQRVLGF 961
            NI   A   +K+R+    ++F    + +G+  ++    ++     +       E+ VLG 
Sbjct: 1015 NILDSAAKQQKSRSMGQLSLFDLYGNVEGSGFEQHIPPIDPNDSWDQGFMLAQEREVLGI 1074

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATI-----------------RGNNIRLAAMVVSK 1004
            Y S HPL  Y   + +       +   T                      +RLA ++ + 
Sbjct: 1075 YVSDHPLRPYHVAVERSRDVSISQLEETREVHDEDGSLLRLEYTVADHQTVRLAGIISAS 1134

Query: 1005 QQKK--TRKGSRIGWVTFSEPAKEYEANFFP 1033
                  T+K  ++     S+   E     FP
Sbjct: 1135 SVIVTLTKKQQQMARCMLSDEEAEVSMVVFP 1165



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           FVHL  HS +S+L+ A S+  ++        PA+A+TD   +F   +F     +     
Sbjct: 2  PFVHLHNHSQFSILDAATSIQRMVKAAVERHMPALALTDHEYMFGVPDFDLACRSYNDTA 61

Query: 70 IIGCQLDIDMQ 80
              Q   D++
Sbjct: 62 ADMKQWKHDVE 72


>gi|293569257|ref|ZP_06680555.1| DNA polymerase III subunit alpha [Enterococcus faecium E1071]
 gi|291587963|gb|EFF19813.1| DNA polymerase III subunit alpha [Enterococcus faecium E1071]
          Length = 1104

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/1032 (31%), Positives = 524/1032 (50%), Gaps = 63/1032 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++                 ++       GYQ+L++L SR  + +       
Sbjct: 63   IGLHLSYTYEE-------------KNYGLLAYAKDEIGYQQLMKLSSRKMIQE------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                 L E+     +     ++  +  AF    +     + L    +F    Y+ L  + 
Sbjct: 103  --KLELAEMTETDHLAFVVPANHSVSEAFNKEDNFFGHWQFL-LGNVFTRNFYIGLTENT 159

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR---PR 247
              D+  E    Q        L A +    L +E+  A +V+  +   + +  ++      
Sbjct: 160  -PDQLPEW--YQYVIKENYSLCALHPIASLQQEELFALEVMKHIKEGSQIPLENLSASLP 216

Query: 248  VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +T + YL +  EM+  F  + L +A+     +A   SF  Q H  +LP +         K
Sbjct: 217  LTANGYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG----K 272

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +    LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFLIV D + 
Sbjct: 273  QAGEYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFLIVWDVMA 325

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP R +MPD D+D   +
Sbjct: 326  FAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPKRFTMPDIDLDIPDN 385

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN    
Sbjct: 386  RREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKI 445

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++ QA     +  E   A      L + +  LEGL RH STHAAG+VI D+ L +LVP+
Sbjct: 446  TLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLLELVPL 504

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
             R    +  +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  IP +
Sbjct: 505  QRGS-DEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLKEIPLN 563

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  R
Sbjct: 564  DAKTLLLFQRGETSGVFQFESAGIRNVLRRLDPENIEDIAAVNALYRPGPMQNIDTFIAR 623

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+ 
Sbjct: 624  KKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKDV 683

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D++K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A++K H+P
Sbjct: 684  LDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHP 743

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIK 843
              F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AIK
Sbjct: 744  GAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFGLTAIK 803

Query: 844  GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            G+       I+     + PF S++ F  R+D + L   +L+SL   G  D    +R QL+
Sbjct: 804  GIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQLM 863

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              L+   +   +     +    ++           +  E+ +      R + E+  LG Y
Sbjct: 864  LDLEGKIQNIVY-----SGGSLDLLGIMA------LKEEEVADYTLEERLKLEEEYLGIY 912

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             SGHP + +     ++ +    + +  I     + L  M+   ++ +T+KG  + +V  +
Sbjct: 913  LSGHPAEGF----DRLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMAFVEGT 968

Query: 1022 EPAKEYEANFFP 1033
            + + E     FP
Sbjct: 969  DSSGEISVTVFP 980


>gi|330985361|gb|EGH83464.1| error-prone DNA polymerase [Pseudomonas syringae pv. lachrymans str.
            M301315]
          Length = 1031

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/1042 (26%), Positives = 464/1042 (44%), Gaps = 84/1042 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  +  L   S++S   GA S   + ++ +     A+AITD   L   +   Q + + G+
Sbjct: 2    TSEYAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASISTGL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
              IIG ++ I+                  P  VLLV +  GY+ L +L++        K 
Sbjct: 62   PLIIGSEMHIENG----------------PKAVLLVESQTGYEALCKLITVARRR-ARKG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+      E   +GL+         I        +Q         ++ F +RL++ ++
Sbjct: 105  EYRLLREDF-EPSPDGLLA--------IWLPDIEGDAQACLAHGRWLRERFAERLWLGVE 155

Query: 188  RHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             HRG  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V++    
Sbjct: 156  LHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEAGHL 215

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +L+    +   + D    L  +V IARRC+F L+      P  +  +     +
Sbjct: 216  LFANGERHLRPLDALAEHYPDW--LLAESVRIARRCTFDLKQLKYEYPHELVPKG----Q 269

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     G   R   G           R +++ EL +I   KF  YFL V D ++
Sbjct: 270  TPTSWLRELTERGARKRWPNGLTPAT------RAQVEKELALITEKKFDSYFLTVHDIVE 323

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  D
Sbjct: 324  FARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERNEPPDIDVDFEHD 382

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L          
Sbjct: 383  RREEVIQYIFRRYGRGRAALTAVASTYHGSGAVRDVAKVLGLPPDQINALADAFSRWS-- 440

Query: 486  PVSLQAIADDSRFREARLAD--PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                 ++    R RE       P + R+L ++ +L G  RH S H  G VI + PL  LV
Sbjct: 441  ----DSLPSPERLREYGFDADMPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLV 496

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602
            P+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P
Sbjct: 497  PVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADLP 556

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             DD +TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  
Sbjct: 557  GDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHP 616

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+N +E I    P +  + + T GV ++QEQVM++A + + Y+  EAD LRRAM   
Sbjct: 617  YLRRRNKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADELRRAMAAW 675

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    ++  +ER  +G   N      A  IFE +  F  YGF +SHAA++A+++Y + W+
Sbjct: 676  KRHGGLEPHRERLRTGMLNNDYDVDFADRIFEQIKGFGSYGFPESHAASFALLTYASCWL 735

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------- 832
            K H P  F  A +           +  QDAR+ +I+I P  V     D  +         
Sbjct: 736  KCHEPAAFTCALINSWPMGFYNPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDST 795

Query: 833  --NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                I   L  ++G     AR I  A + + F    D   R     L+ R  E+L  +GA
Sbjct: 796  RNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLTLRA---GLDARAAEALADSGA 852

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            L      R +    +  +                 +F ++  +   ++TL   +V   + 
Sbjct: 853  LRGLIGHRHRARWEVAGV------------EAQRPLF-NDLPSEDTQVTLPLPTV---AE 896

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +   LG     HPL + +  L     +  ++ ++      + +A +V+ +Q+  T 
Sbjct: 897  DLMADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENDRTLSVAGLVIGRQRPGTA 956

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G  + +VT  +         +
Sbjct: 957  SG--VTFVTLEDEFGMVNVVVW 976


>gi|296136343|ref|YP_003643585.1| DNA polymerase III, alpha subunit [Thiomonas intermedia K12]
 gi|295796465|gb|ADG31255.1| DNA polymerase III, alpha subunit [Thiomonas intermedia K12]
          Length = 1037

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/1038 (26%), Positives = 470/1038 (45%), Gaps = 66/1038 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++  P +V L   S++S L GA     ++++        +A+TD  +L   +     A A
Sbjct: 1    MDPLPDYVELHCRSNFSFLTGASHPEELVERAHELHYAGLALTDECSLAGIVRAHGAAKA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+  ++G Q  ++  +  +             ++V+L     GY  L E ++R+     
Sbjct: 61   AGLPLLVGVQFAVEGDEKTRTP---------PFTLVVLACNLNGYGNLCEFITRLRRASP 111

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K S R+    +        ++L   S           +     +        F  R+++
Sbjct: 112  -KGSYRLDRQSITGETLADCVVLAVPS--------RQATDAGLLELGAWLLARFTGRVWL 162

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             ++ HR  D  R   ++  LA    +PLVA  +            D L A+     ++  
Sbjct: 163  AVELHRRLDDERWLERLQDLAEATAIPLVAAGDVHMHRRSRKPLQDTLTAIRLGRPIADC 222

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                +   + +L++R  +   +    E L  T+ +A RC F L       P    KE   
Sbjct: 223  GHALQPNAERHLRSRLRLALTYP--AELLAETLRVAARCRFSLDELRYRYP----KEVIP 276

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +  +  LR +   G   R   G  AK       +  L+ EL +IA + ++ YFL V D
Sbjct: 277  AGETADGYLRRRVYEGAGRRWPDGLHAK------VQDLLEHELALIAELGYAHYFLTVDD 330

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             + +A+  +I +  GRGS A S   YAL IT++DP +  +LFERF++ +R   PD D+DF
Sbjct: 331  IVAFARSRHI-LCQGRGSAANSAVCYALGITEVDPEQQQVLFERFISKERNEPPDIDVDF 389

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+EVI+Y+  KYG +R A        + K+ALRDVG+AL      VDRL + +   
Sbjct: 390  EHERREEVIQYLYAKYGRDRAALTAAVIRYRPKSALRDVGKALGFDLETVDRLARNVHWW 449

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                V+ + + +     +A      V + + + ++L G  RH S H  G V+ + PLS+L
Sbjct: 450  DGREVARERLEEVGLDPDAL----GVQQWMALVRQLLGFPRHLSQHTGGFVLTEGPLSRL 505

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
            VP+      +  V +++   ++ AGL+K D L L  LT ++K+LD + Q  G    +  I
Sbjct: 506  VPIENASMPERTVIEWDKDDLDAAGLLKVDILALGMLTAIRKALDAIGQSLGQTFAMQDI 565

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV-- 659
            P +D +TY +L    ++G+FQ+ES   +  L  +QP C  D++   ++ RPGPI   +  
Sbjct: 566  PREDPQTYDMLCQADSVGVFQVESRAQQGMLPRLQPRCFYDLVIETAIVRPGPIQGGMVH 625

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y NR+ GKE +V     ++ +L+ T GV ++QEQVMQIA + +G+S  EAD LRRAM  
Sbjct: 626  PYLNRRQGKEVVVYPSKDLESVLQRTLGVPVFQEQVMQIAMVAAGFSAGEADGLRRAMAA 685

Query: 720  KIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
              +   ++K ++R I+G ++ G S   A +I+E +  F++YGF +SHAA++A++ Y +AW
Sbjct: 686  WRRTGSLEKYRDRLIAGMTERGYSADFAQSIYEQVQGFSEYGFPESHAASFALLVYASAW 745

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----DNR 834
            +K H+P EFL A +  +        +  QDA++  + + P  V     D  +        
Sbjct: 746  IKRHHPAEFLMALLNSQPMGFYTPSQLVQDAKRHGVTVRPVDVLHSDWDCTLEEAVPYPA 805

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +   L  +KG+G      I  A   +P    ED   R     +  R L +   A AL   
Sbjct: 806  VRLGLRLVKGLGREAGLRIAAARMSRPPVDAEDLAKRAQLDTMALRQLAA---ADALRSL 862

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
               R Q +              +    +       +     D + L         V    
Sbjct: 863  SGHRRQQVW-------------EATAVERMPALLDDAAPQEDWLELPAPPEGEDIV---F 906

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +    G     HPL + +P+L K  ++   E      G  +R   +V  +QQ +T KG+ 
Sbjct: 907  DYATTGLSLRRHPLALLRPLLAKRRLQTAAELAQAPDGRIVRACGIVTLRQQPETAKGTT 966

Query: 1015 IGWVTFSEPAKEYEANFF 1032
              +V+  +     +   +
Sbjct: 967  --FVSLEDETGTVQVICW 982


>gi|319651827|ref|ZP_08005952.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
 gi|317396479|gb|EFV77192.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
          Length = 923

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/816 (41%), Positives = 498/816 (61%), Gaps = 21/816 (2%)

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
              +ED  AH+ L+A+ +   +  + R R+ + ++YLK+  EM  + S  P+ALENT++IA
Sbjct: 3    HKKEDAFAHECLLAIKNGEKLQDEARERLKSDEYYLKSSGEMAELLSGYPDALENTIKIA 62

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
             +C+ +L++    LP++   +        +  L      G   R             ++R
Sbjct: 63   EQCNVMLELDKQNLPKYPAVKGM----SADELLAEVCWKGFADRYPDADG-------EHR 111

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL +ELN+I  MKFS YFLIV DF++++++N I  GPGRGS AGS+ AY L ITD+DP+
Sbjct: 112  ERLQYELNIIKNMKFSDYFLIVWDFMKFSRENGILTGPGRGSAAGSMVAYVLYITDVDPI 171

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               LLFERFLNP+R+SMPD DIDF   RRDEVIRYV  KYG   VAQI+TFG+L AKAAL
Sbjct: 172  EHQLLFERFLNPERISMPDIDIDFPDHRRDEVIRYVSRKYGELHVAQILTFGTLAAKAAL 231

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
            RDVGRA  +   ++D L + +P+     +  +A  +    R          RL E + KL
Sbjct: 232  RDVGRAFGLNPKELDMLSRKVPSKLGISLK-EAYKESEPLRRFTEESDLNRRLFETAIKL 290

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL RH STHAAG+VI + PL + +P+ +    ++ +TQ++M+ +E  GL+K DFLGL+ 
Sbjct: 291  EGLPRHTSTHAAGVVISEHPLVEAIPIQKG-HENVYLTQYSMEHLEDVGLLKMDFLGLRN 349

Query: 579  LTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LTL++  L  +  + G ++D+  IP DD   Y LL    T GIFQLES GMR  L  +QP
Sbjct: 350  LTLIENILSSIQRKTGTQIDIKNIPLDDEAVYSLLGRGDTTGIFQLESEGMRSVLTRLQP 409

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
               EDI+A+ +LYRPGP++NI ++ +RK+G++ I+  HP + P+L+ T GVI+YQEQ+MQ
Sbjct: 410  TRFEDIVAVNALYRPGPMENIPLFIDRKHGRKPIIFPHPDLKPILENTYGVIVYQEQIMQ 469

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IA  ++G+SL EAD+LRRA+ KK KE +D+++  F+ GA K G ++  A +I++L+ +FA
Sbjct: 470  IAAKMAGFSLGEADLLRRAVSKKQKEVLDRERVHFVGGAVKKGYNEQAAHDIYDLIVRFA 529

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            +YGFN+SHA AY+ I+YQ A++KTHYP+ F+A+ +T  + N  +I ++  + RQ  + + 
Sbjct: 530  NYGFNRSHAVAYSFIAYQLAYLKTHYPLYFMASLLTSAVGNEGRIAQYIGELRQMGLALS 589

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            PPS+N     F V  + I YSLAAIKGVG    R I +A  +K F+ L DFC RV +K +
Sbjct: 590  PPSINKSGYSFLVEKDSIRYSLAAIKGVGAAALRDIFQARKNKRFEDLFDFCIRVSTKAV 649

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NR+VLESLV +G+ D FG  R  LL SLD   ++AQ V     +   + F  ++  F  K
Sbjct: 650  NRKVLESLVHSGSFDEFGEDRAVLLASLDVAAEHAQLVMPE--DDQADFFEDDE--FFPK 705

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
                +     S  +   E+ VLG Y S HP+ +Y+     +      E       N  + 
Sbjct: 706  PKYTEVDPIRSEDKLRFEKDVLGLYLSDHPVSIYESSFHLLDASPLIEL--ERNANKAKT 763

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             A +   ++ +T+KG  + +++ S+   + EA  FP
Sbjct: 764  VAYLSEVKKIRTKKGEPMAFLSLSDQTGDMEAVVFP 799


>gi|294619116|ref|ZP_06698611.1| DNA polymerase III subunit alpha [Enterococcus faecium E1679]
 gi|291594777|gb|EFF26159.1| DNA polymerase III subunit alpha [Enterococcus faecium E1679]
          Length = 1104

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/1033 (31%), Positives = 523/1033 (50%), Gaps = 65/1033 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++                 ++       GYQ+LI+L SR  + +       
Sbjct: 63   IGLHLSYTYEE-------------KNYGLLAYAKDEIGYQQLIKLSSRKMIQE------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
                 L E+     +     ++  +  A  FN             + +F    Y+ L  +
Sbjct: 103  --KLELAEMTETDHLAFVVPANHSVSEA--FNKEDNFFGHWQFLLENVFTRNFYIGLIEN 158

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR---P 246
               D+  E    Q        L A +    L +E+  A +V+  +   + +  ++     
Sbjct: 159  T-PDQLPEW--YQYVIKENYSLCALHPIASLQQEELFALEVMKHIKDGSQIPLENLSASL 215

Query: 247  RVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             +T + YL +  EM+  F  + L +A+     +A   SF  Q H  +LP +         
Sbjct: 216  PLTANGYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG---- 271

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K+    LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFLIV D +
Sbjct: 272  KQAGEYLRELCYSQVERRITN-------YTKEYQERLDYELSVIHQMGFDDYFLIVWDVM 324

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D   
Sbjct: 325  AFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPD 384

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN   
Sbjct: 385  NRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLK 444

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  QA     +  E   A      L + +  LEGL RH STHAAG+VI D+ L +LVP
Sbjct: 445  ITLP-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLLELVP 503

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            + R    +  +TQ+ M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  IP 
Sbjct: 504  LQRGS-DEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLKEIPL 562

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  
Sbjct: 563  NDAKTLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNIDTFIA 622

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+
Sbjct: 623  RKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKD 682

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +D++K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A++K H+
Sbjct: 683  VLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHH 742

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAI 842
            P  F  + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AI
Sbjct: 743  PGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFGLTAI 802

Query: 843  KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KG+       I+     + PF S++ F  R+D + L   +L+SL   G  D    +R QL
Sbjct: 803  KGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQL 862

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            +  L+   +   +     +    ++           +  E+ +      R + E+  LG 
Sbjct: 863  MLDLEGKIQNIVY-----SGGSLDLLGIMA------LKEEEVADYTLEERLKLEEEYLGI 911

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y SGHP + +     ++ +    + +  I     + L  M+   ++ +T+KG  + +V  
Sbjct: 912  YLSGHPAEGF----DRLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMAFVEG 967

Query: 1021 SEPAKEYEANFFP 1033
            ++ + E     FP
Sbjct: 968  TDSSGEISVTVFP 980


>gi|295426301|ref|ZP_06818961.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            amylolyticus DSM 11664]
 gi|295064040|gb|EFG54988.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            amylolyticus DSM 11664]
          Length = 1040

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/1026 (32%), Positives = 536/1026 (52%), Gaps = 43/1026 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  S++SLLE    + ++L         A+A+TD N  +  + F + A   GI+ ++G 
Sbjct: 6    LQNLSAFSLLESPTRVKDLLTTAKKRNYGAVALTDINVTYGLVNFFELAKEVGIKALLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
            Q+ I+          G     +   ++ +  +  GY  L+ L S + LL D G  +  + 
Sbjct: 66   QIRIN----------GLIDPTSKYDLIAIAKSNAGYHNLLRLSSAINLLTDNGNNNKILT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG--DRLYVNLQRHR 190
            L  L +   E +I++       +      N    A+  +   K++     +LY+ +   +
Sbjct: 116  LKELTKYLDEMVIIVPANQHSELVMLSQRNDQLGAD-FVRELKEIVPATSQLYLGVYASK 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVT 249
              + Y +  +  LA    LPLVAT +  +L+ +D+     L A+     +       + T
Sbjct: 175  NQNNYID-YIQSLAKQFALPLVATEDCQYLNPQDHFLRKTLQAIKQGDKLQDIVPLSKQT 233

Query: 250  PDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              HYL    E+ S + D  L +AL NT +IA  C+  +    P+LP++ +    D     
Sbjct: 234  GSHYLAEGEELFSRYHDFYLDQALNNTWKIAEECNAEVIFQKPVLPKYHQ----DKFASS 289

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L   A  GL+ R     +      + Y++RL +EL+VI RM F  YFLIV D I + 
Sbjct: 290  KEYLLYLAQNGLKARFKGKNV-----PEAYQKRLRYELDVINRMGFDDYFLIVWDVINYC 344

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I  GPGRGS  GS+ +YAL IT++DPL + LLFERFLNP R  MPD D+D    RR
Sbjct: 345  HRVGITTGPGRGSACGSLVSYALRITEVDPLEYHLLFERFLNPARHEMPDIDLDIPDIRR 404

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D+VI+Y+  KYG +  AQI+TFG+L AK ALRD GR   +   ++++    +P       
Sbjct: 405  DDVIKYMYRKYGMDHAAQILTFGTLAAKQALRDTGRVFGLSVVELNKWADAVPYSKGKIT 464

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A  +  + R    +      L + ++ LEGL RH S HAAG+VI D  ++ +  +  
Sbjct: 465  LNEAYQESRQTRLIVDSTSENKLLFQTARALEGLPRHYSIHAAGLVISDNSIASISGLQ- 523

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
              +  +PVTQ   K++E  GL+K DFLGL+ LT+L  +L  +  +G+ +D + IP +D +
Sbjct: 524  AGQLGIPVTQQTKKYVESLGLLKIDFLGLRNLTILGNTLALIKSQGINIDPNKIPLNDAK 583

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  T  T  +FQ ES G+R+ L  + PD  ED++A+ +LYRPGP+ NI  +  RK G
Sbjct: 584  TLELFRTGKTDAVFQFESEGIRKVLRKLSPDNFEDLVAVNALYRPGPMQNIDTFIARKKG 643

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            ++ IV   P +  +L  T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK +  + +
Sbjct: 644  EQAIVYPDPSLKQILAPTYGILVYQEQVMQTAQILAGFSLGEADLLRRAMSKKNQALIGQ 703

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +K +FI G  + G SK +   +++ + +FA+YGFN+SHA AY  I+Y  A++K HYP  F
Sbjct: 704  EKAKFIEGTIQKGHSKQVGERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPAAF 763

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A +     +  K + +   A++  I+I+PP +N   +DFK+   +I   L AIKG+  
Sbjct: 764  YTALLNSSGASKLKAQNYIMQAQEAGIRILPPDINQSGLDFKLLKGQILVGLKAIKGLRN 823

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               + I++    KP  SL+DF  +++ K L    + +L+ AG  D    +R +LL +   
Sbjct: 824  DFTKSIVQ--LKKPIKSLDDFLRKIELKYLQLDPIRALIMAGCFDHLNDNRNELLVNCKE 881

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +  Q   +N +                   ++K +   SS R + E++VLGF  +  P
Sbjct: 882  MIENVQLTGQNLS----------LSELLGDAPIKKAAAPTSSQRADMEEKVLGFSTTTTP 931

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L V +   +K   K   +    I  N++ +   ++  +  +T+KG  + + +F++ + + 
Sbjct: 932  LIVVQKYAQKFNAKALNQV--DINENSVCV-GKLMKLKLIRTKKGQTMAFASFADSSSQQ 988

Query: 1028 EANFFP 1033
            E   FP
Sbjct: 989  EVTIFP 994


>gi|16119329|ref|NP_396035.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58]
 gi|71151851|sp|Q8UKK2|DNE22_AGRT5 RecName: Full=Error-prone DNA polymerase 2
 gi|15161845|gb|AAK90476.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58]
          Length = 1085

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/1047 (27%), Positives = 469/1047 (44%), Gaps = 88/1047 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  LQV + +S L GA S   + +   A    AI + D N+L   +   + + A  I+ 
Sbjct: 2    SYAELQVTTHFSFLRGASSAQELFETAKALGIQAIGVVDRNSLAGIVRALEASRATDIRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC                +       S+++  +    Y RL  L++    L + +   
Sbjct: 62   VVGC----------------RLDLTDGMSLLVYPTDRAAYSRLTRLIT----LGKSRGGK 101

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
              C+     +  + +I  + G  G +      +++  A+  L    + FGDR YV+L  R
Sbjct: 102  NNCI-----LHWDDVIAYSRGMIG-VLVPDLPDATCAAQ--LRRIAEAFGDRAYVSLCLR 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
             R  D+ R  ++  LA   ++  V TN+ LF      +  D++  + H+T +        
Sbjct: 154  RRQNDQMRLHEISNLAARFKVKTVVTNDVLFHEPGRRQLQDIVTCIRHNTTIDDVGFERE 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK   EM  +FS   EAL  T+EI RRC F L+      P    +E     K+ 
Sbjct: 214  RHADRYLKPPEEMERLFSRYSEALARTLEIVRRCKFSLEELTYQYP----EEAIVPGKDA 269

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L +        R  +G        QD  + +  EL++I  MK++ YFL V   +++A
Sbjct: 270  QASLEHYVWECAPDRYPEGL------PQDVLKTVRHELDLIRTMKYAPYFLTVFSIVRFA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +RR
Sbjct: 324  RSQGI-LCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+++   Y  ++ A   T    +AK A+RDVG+AL +P   +  L   +        
Sbjct: 383  EEVIQWIYKTYTKDKAALCATVTRYRAKGAIRDVGKALGLPEDVIKALSSGMW------- 435

Query: 488  SLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            S      D   RE  L +P   RL   L+++Q+L G  RH   H  G V+    L  LVP
Sbjct: 436  SWSEEVPDRNIRELNL-NPDDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVP 494

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +      D  + +++   +E    +K D L L  LT + K+ D + +    ++DLS I  
Sbjct: 495  IEPATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMAKAFDLIREHKGQQLDLSNIEQ 554

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y
Sbjct: 555  EDAATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPY 614

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R+ GKE +    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M   K
Sbjct: 615  LRRREGKEPVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFK 674

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                + + K++ +SG  KNG S   A   F  L  F  YGF +SHAA++A+I+Y + ++K
Sbjct: 675  FTGGVSRFKDKLVSGMVKNGYSPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIK 734

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNR 834
             HYP  F AA +  +        +   DA +  +++ P  VN    D  +        + 
Sbjct: 735  CHYPDVFCAALLNSQPMGFYAPAQIVGDAIKHGVEVRPVCVNRSRWDCTLERIEGSDRHA 794

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +      +KG+    A  I+ A  + PF S++D   R           E+LV     D F
Sbjct: 795  VRLGFRQVKGLAVADAARIVAARMNNPFASVDDMWRRSSVP------TEALVQLAEADAF 848

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--------SDKITLEKFSVE 946
                   L SL   ++ A W  K   ++   +FA                ++ L + +  
Sbjct: 849  -------LPSLKLERRDALWAIKALRDEPLPLFAAAAEREATAIAEQQEPEVALRQMTDG 901

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            ++ +    +    G     HP+   +  L    I    E++    G  +  A +V+ +Q+
Sbjct: 902  HNVI---EDYSHTGLTLRQHPVAFLRRDLSARNIIPCAEAMNARDGRWVYTAGLVLVRQK 958

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + KG  + ++T  +         +P
Sbjct: 959  PGSAKG--VMFITIEDETGPANIVVWP 983


>gi|256850997|ref|ZP_05556386.1| DNA polymerase III alpha-chain [Lactobacillus jensenii 27-2-CHN]
 gi|260661209|ref|ZP_05862123.1| DNA polymerase III alpha-chain [Lactobacillus jensenii 115-3-CHN]
 gi|256616059|gb|EEU21247.1| DNA polymerase III alpha-chain [Lactobacillus jensenii 27-2-CHN]
 gi|260548146|gb|EEX24122.1| DNA polymerase III alpha-chain [Lactobacillus jensenii 115-3-CHN]
          Length = 1039

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/1024 (31%), Positives = 528/1024 (51%), Gaps = 40/1024 (3%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS+SLL+  + +++++         ++A+TD N  +  ++F   A  A ++P++G 
Sbjct: 6    LQTLSSFSLLKSPILIDDLVKDAVDKGYSSLALTDINVTYGLVDFYLAAQKANLKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
             + ++          G         ++ +    +GY+ ++ L S + L  D G +   + 
Sbjct: 66   TIRLN----------GIVDQAHRYDLISIAKNNQGYKNILRLSSAINLKTDNGDERKVLT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +  ++ + ++    +  + R    N+ ++    +   +K+      + L  + G 
Sbjct: 116  LKQLAKYLSDQVFIVPANITSEL-RYLAENNEKLGSDFIRELQKIIPSSSDLYLGVYAGK 174

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PD 251
            ++        +A    LPL AT +  +L   D+     L A+     +       +    
Sbjct: 175  NQPYIDYAKSMAKQFNLPLAATEDVQYLQASDHFLVKTLRAIEQGQKLVDTSSLALQKGS 234

Query: 252  HYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HYL+   E+VS +++     AL N  +IA  C   +    P LP++ +    D +K    
Sbjct: 235  HYLRTSGELVSAYNECGILSALHNAAKIADECKASVTFTQPELPKYKQSFAPDSKK---- 290

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR     GL  R     I      + Y++RLD+EL +I +M F  YFLIV D I +A  
Sbjct: 291  YLRQLVQKGLARRFNGQTI-----PEIYQKRLDYELKIIDQMGFDDYFLIVWDVINYAHS 345

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             +I  GPGRGS AGS+ AY+L IT++DP++++LLFERFLNP R  MPD D+D   +RRDE
Sbjct: 346  VDITTGPGRGSAAGSLVAYSLAITEVDPIKYNLLFERFLNPARAQMPDIDLDIPDNRRDE 405

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            +I+Y+  KYG +  AQI+TFG+L AK ALRD  R   +   Q  +    IP   +     
Sbjct: 406  IIKYMFEKYGMDHAAQILTFGTLAAKQALRDCARVFGLTTIQASKFTHAIPFSKSKITLA 465

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            QA  +    +    A      L + + +LEG+ RHAS HAAG+VI D+ ++Q+  +    
Sbjct: 466  QAYQESKALQLLVNASELNKLLFKTAMRLEGIPRHASIHAAGLVISDKSIAQIAGLQ-AG 524

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ     +E+ GL+K DFLGL+ LT+L  +++ LA+ G+K+D   IP DD +T 
Sbjct: 525  TLGIPVTQQTKAHVEELGLLKIDFLGLRNLTILGDTVELLAKDGIKLDPKRIPLDDVKTL 584

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  +FQ ES G++  L  + PD  ED++A+ +LYRPGPI NI  + NRK GKE
Sbjct: 585  QLFQRGKTDAVFQFESQGIKNVLRRLHPDSFEDVVAVNALYRPGPIQNIDHFINRKQGKE 644

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I      +  +L+ T G+++YQEQVMQ AQ+++G+SL EAD+LRRAM KK ++ +D+++
Sbjct: 645  PITYPDSSLAKLLQPTYGILVYQEQVMQTAQIMAGFSLGEADLLRRAMSKKKQDLIDQER 704

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E+FI+GA KNG  +  A  ++  + +FA+YGFN+SHA AY+ I++  A++K HYP  F  
Sbjct: 705  EKFIAGAVKNGHPQATASKVYAYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHYPAAFFT 764

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +     N  K  ++   A++  ++I+ P +N    D+ + + +I   L AIKG+    
Sbjct: 765  ALLNSVSANRVKAGEYITQAQEAGVKILAPDINNSQTDYYLVNGQIQVGLKAIKGLRVDF 824

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
             R+I     +  F SL DF  ++D K L+ + + +++ AG  D    +R  LL +   I 
Sbjct: 825  LRNIAGLPKN--FTSLADFLRKIDVKFLSEQAIAAMIKAGCFDKIDENRKMLLANCKEIV 882

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +  ++             +   G     I LE+    NS+ +   E+ VLGF  +  P+ 
Sbjct: 883  ENIKFT------GQNETLSEGLGG----IRLEQAPAPNSNEKATMEEEVLGFSTTKTPIL 932

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            V +    +   +          G  +     ++  +  +T+KG  + + TF + + E E 
Sbjct: 933  VVQKYAERFNAQALNSFTVNETGIAV---GKLIKLKLIRTKKGDTMAFSTFRDASSEQEI 989

Query: 1030 NFFP 1033
              FP
Sbjct: 990  TIFP 993


>gi|329667461|gb|AEB93409.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii DPC 6026]
          Length = 1038

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/1027 (31%), Positives = 525/1027 (51%), Gaps = 43/1027 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQ  S ++LLE    + N+ +        AIA+TD N  +  ++F + A   GI+P++
Sbjct: 4    VSLQNLSGFTLLESPTKVKNLAENAKKKGYSAIALTDINITYGLVDFYKAAKDTGIKPLL 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G Q          +   G         ++++    +GY+ ++ L S + LL +  +   I
Sbjct: 64   GMQ----------LRINGLIDEANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENI 113

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR--LYVNLQRH 189
                  +     LI++T  +     +    N+ ++    L   +        +Y+ +   
Sbjct: 114  LTFENLKKYLGHLILITPSNLHSELKMLQTNNPKMGANYLRKLQDSLPSSSSMYLGVYAD 173

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
             G   Y    +  LA    LPL A  +  +L+  +      L A+  +T +   ++  + 
Sbjct: 174  SGQQEYIN-YIRSLATQFSLPLTAVEDGQYLNRNEQFLRRTLQAIKTNTHLENIEQLAKQ 232

Query: 249  TPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               HYLKN  E+   +   D+ +AL+N  EI + C+  ++   P LP+F + +       
Sbjct: 233  AGSHYLKNSEELQVSYRKFDIEDALKNAEEIGKICTAEIKFQDPQLPKFKQNKFP----T 288

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L   A  GL  R      A+      Y++RLD+EL VI  M F  YFLIV D + +
Sbjct: 289  SKEYLHALAQEGLAKRFNNQIPAQ------YQKRLDYELQVINEMGFDDYFLIVWDVMNF 342

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A   +I  GPGRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D+D   +R
Sbjct: 343  AHSVHITTGPGRGSAAGSLVSYALRITEVDPIEYNLLFERFLNPARQQMPDIDLDIPDNR 402

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI+Y+  KYG    AQI+TFG+L AK  L+DV R   +   +  R    IP+     
Sbjct: 403  RDEVIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHSKGKI 462

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               +A       +     +     L   ++ LE L RH S HAAG+VI D  L+++V + 
Sbjct: 463  TLAEAYQKSKELQLLVNTNELSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVGLQ 522

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                  +PVTQ     +E  GL+K DFLGL+ LT+L   +  L   G+ +D + IP DD 
Sbjct: 523  AGPL-GIPVTQQTKLNVESLGLLKIDFLGLRNLTILGNIVAALRADGIDIDPNRIPLDDQ 581

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ET  L     T  +FQ ES G+++ LE + PD  EDI+A+ +LYRPGPI+NI  + NRK+
Sbjct: 582  ETLTLFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPINNIDHFINRKH 641

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GKE++    P +  +L  T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK  + + 
Sbjct: 642  GKERVQYPDPSLKKILGTTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNADVIQ 701

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +++ +FI GA K G  K  A  +++ +A+FA+YGFN+SHA AY+ I++  A+ K HYP  
Sbjct: 702  RERAKFIEGAIKLGRKKETAEKVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYPGA 761

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  A +   M N  KI ++   A++  I+I+PP++     DF + + +I   L AI+G+ 
Sbjct: 762  FYLALLNSNMGNRNKIAQYLMQAQEAGIKILPPNIENSKADFSLENGKILVGLKAIRGLR 821

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            +   + I+E    +P  S+ DF  ++D+  L+   +E+L+ AG  D    +R +LL+   
Sbjct: 822  SDLLKQILEI--KRPIKSMTDFLWKIDNNLLSADAVENLIKAGTFDRLAPNRNELLKINK 879

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
            ++ +  +    N      ++F     T   K+  EK     ++ +   E   +GF    +
Sbjct: 880  DLVESVKMAGSN-----LSLF----ETLEPKVEEEKMP--TAAEKSAMEVEAMGFSTGIN 928

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P+   +   RK   K  +   +  +G  +     ++  +   T+KG  + +  FS+ + E
Sbjct: 929  PIIAVQKYARKFNAKRLQVFESNEQGIAV---GKLMKVKPITTKKGDNMAFAVFSDTSGE 985

Query: 1027 YEANFFP 1033
             +   FP
Sbjct: 986  KDFTIFP 992


>gi|301385165|ref|ZP_07233583.1| error-prone DNA polymerase [Pseudomonas syringae pv. tomato Max13]
          Length = 1031

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/1039 (26%), Positives = 457/1039 (43%), Gaps = 84/1039 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + D+       A+AITD   L   +   Q +   G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFDRALRHGYAALAITDECTLAGIVRAWQASKDTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++                  P IVLLV    GYQ L  L++      + K   R
Sbjct: 65   VGSEMHLENG----------------PKIVLLVEHLTGYQALCTLITVARRRAK-KGEYR 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L     +    L +      G         +           ++ F +RL++ ++ HR
Sbjct: 108  LLLEDFDHLPGGLLAIWLADIEGDAQACLAQGN---------WLRERFAERLWLGVELHR 158

Query: 191  G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
            G  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V++       
Sbjct: 159  GADDEQRLADLLALAQSLAIPAVASGDVHMHARGRRALQDTITAIRHHTTVAEAGHLLFA 218

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + +L++   +   + D    L  ++ IARRC+F         P  +  +     +   
Sbjct: 219  NGERHLRSLDALAEHYPDW--LLAESLRIARRCTFTFDQLHYEYPHELVPKG----QTST 272

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR     G+  R  +G           R +++ EL +I   KF  YFL V D +++A+
Sbjct: 273  SWLRELTERGIRRRWPRGLGVAA------RAQVEKELALITEKKFDSYFLTVHDIVEFAR 326

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  DRR+
Sbjct: 327  SQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERDEPPDIDVDFEHDRRE 385

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  +YG  R A      +     ALRDV + L +P  Q++ L             
Sbjct: 386  EVIQYIFRRYGRGRAALTAVASTYHGSGALRDVAKVLGLPPDQINALADAFSRWS----- 440

Query: 489  LQAIADDSRFRE--ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              ++    R RE       P + R+L ++ +L G  RH S H  G VI + PL  LVP+ 
Sbjct: 441  -DSLPSPERLREYGFDAETPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLDTLVPVE 499

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                ++  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P DD
Sbjct: 500  NAAMAERTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKQWTLASLPGDD 559

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
              TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  Y  
Sbjct: 560  RPTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLR 619

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+N +E I    P +  + + T GV ++QEQVM++A + + Y+  EAD LRRAM   K  
Sbjct: 620  RRNNEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADQLRRAMAAWKRH 678

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +D  +ER  +G   NG     A  IFE +  F  YGF +SHAA++A+++Y + W+K H
Sbjct: 679  GGLDPHRERLRTGMLANGYDADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCH 738

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD---------N 833
             P  F  A +           +  QDAR+ +I+I    V     D  +            
Sbjct: 739  EPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRSVDVRYSHWDCTLEPLDHPDSTRNL 798

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I   L  ++      A  I  A + +PF    D   R     L+ R  E+L  +GAL  
Sbjct: 799  AIRLGLRMLRSFREEDALRIEAARSKRPFADATDLAQRA---GLDSRAAEALADSGALRG 855

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R +    +  +                 +F  +  +   ++TL   +V   +    
Sbjct: 856  LIGHRHRARWEVAGV------------EAQRPLF-DDVTSEEVQVTLPLPTV---AEDLV 899

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +   LG     HPL + +  L     +  ++ +A      + +A +V+ +Q+  T  G 
Sbjct: 900  ADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLALENNRTLSVAGLVIGRQRPGTASG- 958

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + +VT  +         +
Sbjct: 959  -VTFVTLEDEFGMVNVVVW 976


>gi|209547187|ref|YP_002279105.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv.
            trifolii WSM2304]
 gi|209538431|gb|ACI58365.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM2304]
          Length = 1087

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/1049 (26%), Positives = 471/1049 (44%), Gaps = 92/1049 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQV + +S L GA S   +          A+ I D N+L   +   + + A G++ 
Sbjct: 2    RYAELQVTTHFSFLRGASSAEELFATAKLMGIEALGIVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC                +       S+++  +    Y RL  L++    L +G+   
Sbjct: 62   VVGC----------------RLDLADGMSMLVYPTDRAAYSRLTRLLT----LGKGRGGK 101

Query: 130  RICLSWLQE--IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              C+  L +  +  EGLI +                 +    +L    ++FGDR YV+L 
Sbjct: 102  AKCILQLDDVALYAEGLIGVLVPDMAD----------ETCAVQLRKMAEIFGDRAYVSLC 151

Query: 188  -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
             R R  D+ R  ++  LA  H +  V TN+ LF      +  DV+  +   T +      
Sbjct: 152  LRRRPNDQLRLHELSNLAVKHRVKTVITNDVLFHEPGRRQLQDVVTCIRTGTTIDDVGFE 211

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 D +LK   EM  +F   PEAL  T++I  RC F L+      P    +E      
Sbjct: 212  RERHADRFLKPPEEMARLFPRYPEALARTMDIVERCRFSLEELVYQYP----EEALIPGM 267

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L +    G+  R  +G  A         + +  EL +I  MK++ YFL V   ++
Sbjct: 268  TAQESLEHYTWEGVTTRYPEGLPAH------VEKTIRHELALIETMKYAPYFLTVFSIVR 321

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +
Sbjct: 322  YARAQGI-LCQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHE 380

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+++   YGH++ A   T    +AK A+RDVG+AL +P   ++ L   I      
Sbjct: 381  RREEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALGLPEDLINSLSSGIW----- 435

Query: 486  PVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              S      +++ R   L +P   RL   L ++Q+L G  RH   H  G V+    L  L
Sbjct: 436  --SWSETVGENQVRALGL-NPEDRRLALTLRLAQQLMGAPRHLGQHPGGFVLTHDRLDHL 492

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
            VP+      D  V +++   +E   ++K D L L  LT + K+   + +     + L+ I
Sbjct: 493  VPIEPAAMVDRQVIEWDKDDVEALKMMKVDVLALGMLTCMAKAFALIGEHKHQDLYLATI 552

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY ++    TLG FQ+ES      L  M+P    D++  V++ RPGPI  D + 
Sbjct: 553  PQEDPATYAMIRKADTLGTFQIESRAQMSMLPRMKPKTFYDLVIQVAIVRPGPIQGDMVH 612

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+ GKEK+    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M  
Sbjct: 613  PYLRRREGKEKVEYPTPELEAVLHKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMAT 672

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    + + K++ +SG  K+G S   A   F  L  F  YGF +SHAA++A+I+Y + +
Sbjct: 673  FKFTGGVSRFKDKLVSGMIKSGYSPEFAEKTFGQLEGFGSYGFPESHAASFALIAYASNY 732

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GD 832
            +K H+P  F AA +  +        +   DAR+ ++++ P  +N    D  +      G 
Sbjct: 733  VKCHFPDVFCAALLNSQPMGFYAPAQIVSDARKHDVEVCPICINRSRWDCTLEEVEGTGR 792

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            + +   +  ++G+ T  A  I+ A AD+PF S++D   R     +    L  L  A A  
Sbjct: 793  HAVRLGMRLVRGLATADAARIVAARADEPFASVDDMWRR---SGVPVASLVELAEADAF- 848

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--------AHEKGTFSDKITLEKFS 944
                     L SL   ++ A W  K   ++   +F                 ++ L + +
Sbjct: 849  ---------LPSLRLERRDALWAIKALRDEPLPLFTSAAEREARAIAEQQEPEVELRQMT 899

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              ++ V    +   +G     HPL   +  L K  I    +++    G  +  A +V+ +
Sbjct: 900  DGHNVV---EDYSHIGLTLREHPLRFLRADLTKRQIVTCAKAMTARDGQWLMAAGLVLVR 956

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG  + ++T  +         +P
Sbjct: 957  QRPGSAKG--VMFITIEDETGIANIVVWP 983


>gi|282932049|ref|ZP_06337507.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 208-1]
 gi|281303816|gb|EFA95960.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 208-1]
          Length = 1039

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/1024 (31%), Positives = 528/1024 (51%), Gaps = 40/1024 (3%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS+SLL+  + +++++         ++A+TD N  +  ++F   A  A ++P++G 
Sbjct: 6    LQTLSSFSLLKSPILIDDLVKDAVDKGYSSLALTDINVTYGLVDFYLAAQKANLKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
             + ++          G         ++ +    +GY+ ++ L S + L  D G +   + 
Sbjct: 66   TIRLN----------GIVDQAHRYDLISIAKNNQGYKNILRLSSAINLKTDNGDERKVLT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +  ++ + ++    +  + R    N+ ++    +   +K+      + L  + G 
Sbjct: 116  LKQLAKYLSDQVFIVPANITSEL-RYLAENNEKLGSDFIRELQKIIPSSSDLYLGVYAGK 174

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PD 251
            ++        +A    LPL AT +  +L   D+     L A+     +       +    
Sbjct: 175  NQPYIDYAKSMAKQFNLPLAATEDVQYLPASDHFLVKTLRAIEQGQKLVDTSSLALQKGS 234

Query: 252  HYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HYL+   E+VS +++     AL N  +IA  C   +    P LP++ +    D +K    
Sbjct: 235  HYLRTSGELVSAYNECGILSALHNAAKIADECKASVTFTQPELPKYKQSFAPDSKK---- 290

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR     GL  R     I      + Y++RLD+EL +I +M F  YFLIV D I +A  
Sbjct: 291  YLRQLVQKGLARRFNGQTI-----PEIYQKRLDYELKIIDQMGFDDYFLIVWDVINYAHS 345

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             +I  GPGRGS AGS+ AY+L IT++DP++++LLFERFLNP R  MPD D+D   +RRDE
Sbjct: 346  VDITTGPGRGSAAGSLVAYSLAITEVDPIKYNLLFERFLNPARAQMPDIDLDIPDNRRDE 405

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            +I+Y+  KYG +  AQI+TFG+L AK ALRD  R   +   Q  +    IP   +     
Sbjct: 406  IIKYMFEKYGMDHAAQILTFGTLAAKQALRDCARVFGLTTIQASKFTHAIPFSKSKITLA 465

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            QA  +    +    A      L + + +LEG+ RHAS HAAG+VI D+ ++Q+  +    
Sbjct: 466  QAYQESKALQLLVNASELNKLLFKTAMRLEGIPRHASIHAAGLVISDKSIAQIAGLQ-AG 524

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ     +E+ GL+K DFLGL+ LT+L  +++ LA+ G+K+D   IP DD +T 
Sbjct: 525  TLGIPVTQQTKAHVEELGLLKIDFLGLRNLTILGDTVELLAKDGIKLDPKRIPLDDVKTL 584

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  +FQ ES G++  L  + PD  ED++A+ +LYRPGPI NI  + NRK GKE
Sbjct: 585  QLFQRGKTDAVFQFESQGIKNVLRRLHPDSFEDVVAVNALYRPGPIQNIDHFINRKQGKE 644

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I      +  +L+ T G+++YQEQVMQ AQ+++G+SL EAD+LRRAM KK ++ +D+++
Sbjct: 645  PITYPDSSLAKLLQPTYGILVYQEQVMQTAQIMAGFSLGEADLLRRAMSKKKQDLIDQER 704

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E+FI+GA KNG  +  A  ++  + +FA+YGFN+SHA AY+ I++  A++K HYP  F  
Sbjct: 705  EKFIAGAVKNGHPQATASKVYAYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHYPAAFFT 764

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +     N  K  ++   A++  ++I+ P +N    D+ + + +I   L AIKG+    
Sbjct: 765  ALLNSVSANRVKAGEYITQAQEAGVKILAPDINNSQTDYYLVNGQIQVGLKAIKGLRVDF 824

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
             R+I     +  F SL DF  ++D K L+ + + +++ AG  D    +R  LL +   I 
Sbjct: 825  LRNIAGLPKN--FTSLADFLRKIDVKFLSEQAIAAMIKAGCFDKIDENRKMLLANCKEIV 882

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +  ++             +   G     I LE+    NS+ +   E+ VLGF  +  P+ 
Sbjct: 883  ENIKFT------GQNETLSEGLGG----IRLEQAPAPNSNEKATMEEEVLGFSTTKTPIL 932

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            V +    +   +          G  +     ++  +  +T+KG  + + TF + + E E 
Sbjct: 933  VVQKYAERFNAQALNSFTVNETGIAV---GKLIKLKLIRTKKGDTMAFSTFRDASSEQEI 989

Query: 1030 NFFP 1033
              FP
Sbjct: 990  TIFP 993


>gi|108761967|ref|YP_632162.1| DNA polymerase III subunit alpha [Myxococcus xanthus DK 1622]
 gi|108465847|gb|ABF91032.1| DNA polymerase III, alpha subunit [Myxococcus xanthus DK 1622]
          Length = 1013

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/1034 (26%), Positives = 465/1034 (44%), Gaps = 80/1034 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L   S++S L GA     ++   A     A+A+TD + L+  ++    A   G++ 
Sbjct: 2    DYAELVCRSNFSFLRGASHPEELVATAARLGLGALALTDADGLYGVVKAHLAAKEHGVRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +L ++                  P +V+  +   GY  L  LVS+  +    K   
Sbjct: 62   ILGAELTLEDG----------------PPVVVYAADGTGYSNLCALVSQSRMT-HPKGEA 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    + +         + G    +     F       +++++  + F +R +V + R 
Sbjct: 105  GLPWRAVADR--------SAGLLALLPAPAPF-------EQVVSLAEAFPERFHVGICRT 149

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
                D  RE++  +LA    +PLVA N+            DVL+++ H T V +   R  
Sbjct: 150  LSAGDAEREARAERLALELGVPLVAHNDVHTHHRRRQALQDVLVSIRHGTSVDRAGTRLL 209

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               +  LK+  +M  +F+D PEAL    E+A RC   L       P     E     +  
Sbjct: 210  PNAERTLKSPRDMARLFADRPEALARAAELASRCHASLDDLHYRFPEEGLPEG----RTA 265

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR     GL  R  +G            ++++ EL +IA + F+GYFL + D +++A
Sbjct: 266  DAHLRVLTYEGLRFRYPEGV------PPAVVKQIEHELKLIAALDFAGYFLALWDIVRFA 319

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A S   YAL IT IDP+R  LLFERFL+ +R   PD D+DF  +RR
Sbjct: 320  RARGI-LCQGRGSAANSAVCYALQITAIDPVRMGLLFERFLSMERKEPPDIDVDFEHERR 378

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV  K+G      +      + + ALR+ G+AL +   QVDRL K +       V
Sbjct: 379  EEVLQYVYEKHGRRHAGMVCEVICYRGRLALRETGKALGLSLDQVDRLSK-VSASNGFDV 437

Query: 488  SLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            +          REA L+  D  V + L ++ +LEG  RH S H  G V+   PL++LVP+
Sbjct: 438  TPDV------LREAGLSAEDGRVQKTLALAMELEGFPRHLSIHVGGFVMTREPLTELVPV 491

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                     V Q+    I   GL+K D L L  LT L K    + +    ++ L+ +P +
Sbjct: 492  ENAAMPGRTVIQWEKDDINAVGLLKVDLLALGMLTALSKCFALIREHHGRELSLATVPAE 551

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D + Y +L    T+G+FQ+ES      L  ++P    D++  ++L RPGPI  + +  + 
Sbjct: 552  DPKVYDMLCEADTVGVFQIESRAQMNMLPRLRPRTFYDLVVEIALIRPGPIVGNMVHPFL 611

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R+NG+E++      +  +L +T GV ++QEQ M++A + +G++  EAD LRR +  K  
Sbjct: 612  RRRNGQEQVEYPSEAVKEILGKTLGVPLFQEQAMKLAMVAAGFTAGEADGLRRVLSHKRA 671

Query: 723  EEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            E M  + + RF+ G    G ++  A   F+    FA YGF +SH+A++A+I+Y ++W+K 
Sbjct: 672  ESMLLQYRGRFVEGCVSRGYTRKQAEEWFDNFRGFAHYGFPESHSASFALIAYASSWLKC 731

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--RIYYSL 839
            HYP  F AA +  +            DA++  + + P  V     D  + +    +   L
Sbjct: 732  HYPAAFTAALLNSQPMGFYAPHTLVADAQRHGVVVRPVDVRHSSWDCTLEEGGAALRLGL 791

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
              +KG+G +  R +  A  +  F  + D        +  R  L  L  AGAL     SR 
Sbjct: 792  RMVKGLGESAGRRVATAKREG-FRDVGDLARW---SRAPRHELTRLALAGALSSLCGSRR 847

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            Q L  L  +               +++F           T  +    +   R   +   +
Sbjct: 848  QALWELQAL----------GPLDSDDLFFGMAMDG----TAVELPSMDVLERVCADYDTV 893

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G     HPL++ +P+L++ G    E       G  + +  M++ +Q+  T KG  + +++
Sbjct: 894  GLSLEKHPLELLRPVLKQQGAVTAEGLKKVAHGRRVAVGGMLICRQRPPTAKG--LCFIS 951

Query: 1020 FSEPAKEYEANFFP 1033
              +          P
Sbjct: 952  LEDETGIANLVVPP 965


>gi|134103090|ref|YP_001108751.1| error-prone DNA polymerase [Saccharopolyspora erythraea NRRL 2338]
 gi|291003967|ref|ZP_06561940.1| error-prone DNA polymerase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915713|emb|CAM05826.1| DNA polymerase III, alpha subunit, putative [Saccharopolyspora
            erythraea NRRL 2338]
          Length = 1056

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/1037 (28%), Positives = 465/1037 (44%), Gaps = 66/1037 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS++S L+GA     ++ + A     AIA+TD + ++  + FS+ A   G++ 
Sbjct: 18   PYAELHAHSNFSFLDGASHPEELVAESARLGLEAIALTDHDGMYGVVRFSEAAAEHGVRT 77

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + G +L + +        Q   P P    +++L     GY RL   +S   L  Q K   
Sbjct: 78   VFGAELSLGL-----TAAQTGVPDPEGNHLLVLARDPGGYARLCREISSAQLAGQEKGRP 132

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
               L  L E   +  ++LTG   G +  A        A   L     LFG + + V L  
Sbjct: 133  TYRLEQLAEAAEDHWLVLTGCRKGAVRSALAEGGPAAAAAELDRLVALFGGENVAVELTD 192

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
                 D  R   +  LA    LP VATN + F    +     V+ A+     + + D   
Sbjct: 193  QDLPTDSERNDVLFALARDAGLPAVATNGAHFAGPWNGRMASVVAAIRARRGLDEMDGWL 252

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 ++L++  EM   F+  P A+E    + R C+F L++ AP LP F   E     + 
Sbjct: 253  PAWAGNHLRSGEEMAERFARYPGAVETAARLGRECAFDLRLVAPRLPPFDVPEG----RT 308

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E   LR     G   R          +      +++ EL VI ++ F GYFL+V D + +
Sbjct: 309  EAEWLRELTYRGALRRYGLPQDNPAAY-----AQIEHELAVIEKLDFPGYFLVVHDIVSF 363

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
              +  I +  GRGS A S   +AL IT+ DP+R+ LLFERFL P+R   PD D+D   DR
Sbjct: 364  CGEMGI-LCQGRGSAANSAVCFALRITNADPVRYDLLFERFLAPERDGPPDIDLDIESDR 422

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+E I+YV  KYG    AQ+    S + K+A+RDV RAL     Q D   K I +    P
Sbjct: 423  REEAIQYVYRKYGRTHAAQVANVISYRPKSAVRDVARALGYSPGQQDAWSKQIEHWGPLP 482

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                                  D++ E++ +L G  RH   H+ G+VI  +P+S++ P+ 
Sbjct: 483  ----------------DDGEVPDQVRELAGELMGYPRHLGIHSGGMVICHQPVSEVCPVE 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                    V Q++       GL+KFD LGL  L+ L  ++D   +   ++VDL  +   D
Sbjct: 527  WARMPGRTVLQWDKDDCASVGLVKFDLLGLGMLSALHYAIDLAREHHGIEVDLGELDLAD 586

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
             E Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI       Y  
Sbjct: 587  DEVYAMLRRADAVGVFQVESRAQLATLPRLKPRKFYDLVVEVALIRPGPIQGGSVHPYIR 646

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R+NG+E     HPL+   L++T GV ++QEQ+MQ+A  ++G+S  EAD LRRAMG K  E
Sbjct: 647  RRNGEEDWDYEHPLMAAALEKTLGVPLFQEQLMQLAVDIAGFSAGEADELRRAMGSKRSE 706

Query: 724  E-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E M + + R   G + NGI+  +A  I++ L  FA++GF +SHA ++AV+ + ++W K +
Sbjct: 707  ERMARLRGRLFEGMAVNGITGELAERIYQQLLAFANFGFPESHALSFAVLVFASSWFKRY 766

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP--CVDFKV-----GDNRI 835
            YP  F AA +  +       +    DAR+  +++  P VN      D +      G   +
Sbjct: 767  YPAVFCAALLKAQPMGFYSPQSLVADARRHGVRVHGPDVNASRGQADLEPDAESEGGQAV 826

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               LA+++ +G + A  ++     + P+  + D   R+     N   +E+L  AGA  CF
Sbjct: 827  RLGLASVRTLGDSVAEQLVAERTENGPYTGMADLSRRMSL---NAAQMEALATAGAFGCF 883

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            G SR + L +                ++ + +        +D   L      +       
Sbjct: 884  GLSRREALWN----------AAAAAGDRPDRLPGTT--VSADAPPLPGM---DGVELAAA 928

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +    G     +PL   +  L +MG     +      G  + +   V  +Q+  T  G  
Sbjct: 929  DVWATGISPDSYPLQFLRSRLGEMGALSAADLSEVDNGERVLVGGAVTHRQRPATAGG-- 986

Query: 1015 IGWVTFSEPAKEYEANF 1031
            + ++   +         
Sbjct: 987  VTFLNLEDETGMINVVC 1003


>gi|330990447|ref|ZP_08314406.1| Error-prone DNA polymerase 1 [Gluconacetobacter sp. SXCC-1]
 gi|329762484|gb|EGG78969.1| Error-prone DNA polymerase 1 [Gluconacetobacter sp. SXCC-1]
          Length = 1053

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/1037 (26%), Positives = 463/1037 (44%), Gaps = 72/1037 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  LQV + +S L GA S   + ++  A    A+ I D N+L   ++    A   GI+ 
Sbjct: 2    AYAELQVTTYFSFLRGASSPIELFEQAKALGIEALGICDRNSLAGMVQAHVAAKETGIRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC                +        +++  +    Y RL  L+S       GK   
Sbjct: 62   VVGC----------------RLDLADFAPVLVYPTDRAAYARLCRLLSLGKAR-AGKGKC 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
             +    L   G   L++L   ++                  L   ++ F DR  + L  R
Sbjct: 105  HLLWEDLVAWGEGLLVILLPDTA-----------DDACALHLRKLQEAFADRASMALTLR 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  D+ R  ++  LA+   +P++ TN+ LF + +     DV+  + + T + +    R 
Sbjct: 154  RRPNDQMRLYELANLAHQARVPMIVTNDVLFHTHDRRILQDVVTCIRNHTTIDEAGFARE 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK  +EM  +FS  PEA++ T EI  RC F L   A   P     E     +  
Sbjct: 214  RHADRYLKPPAEMARLFSRYPEAIDRTREIVARCRFSLDDLAYQYP----DEVSVPGQSP 269

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L      G      +G         + R+ L  EL +I RM ++ YFL V   +++A
Sbjct: 270  QQALEALTWEGAAAAYPEGI------PPEVRKTLTHELALIGRMDYAPYFLTVHSIVRYA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A S   Y L IT IDP R SLLFERF++ +R   PD D+DF   RR
Sbjct: 324  RSQGI-LCQGRGSAANSAVCYVLGITAIDPARTSLLFERFVSEERREPPDIDVDFEHARR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            ++VI+++   YG    A        +AK ALRDVG+ + +P   +  L   I       +
Sbjct: 383  EQVIQWIYGHYGRNHAALTAVVTRYRAKGALRDVGKVMGLPEDLIRTLSSQIWGW-GRKL 441

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A+ +        L+D  +   L++++ L G+ RH S H  G V+    L +LVP+  
Sbjct: 442  DEDALDETG----IDLSDRRIRLTLDLARCLIGMPRHLSQHPGGFVLTHDRLDELVPIEP 497

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                   + +++   I+    +K D L L  LT ++K LD LA+       L  IP +D 
Sbjct: 498  AAMDARQIIEWDKDDIDVLKFMKVDVLALGMLTCMKKGLDLLAEHKGQHYTLQTIPAEDP 557

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNR 664
             TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  R
Sbjct: 558  RTYAMIRKADTIGVFQIESRAQMSMLPRLRPRVFYDLVIEVAIVRPGPIQGDMVHPYLRR 617

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKE 723
            + G+EK +   P ++ +L++T G+ ++QEQVMQ+A + +G+S SEAD LRRAM   K   
Sbjct: 618  RAGQEKEIYPTPELEKVLRKTLGIPLFQEQVMQVAMVCAGFSASEADQLRRAMATFKNTG 677

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             + + + R I G +  G   T A  IF+ L  F  YGF +SHAA++A+++Y ++WMK  +
Sbjct: 678  TVSRFRTRLIEGMTARGYPATFAERIFQQLEGFGSYGFPESHAASFAILAYSSSWMKCTH 737

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------GDNRIY 836
            P  FLAA +  +        +  +DAR+  ++I P  +N    D  +       G   + 
Sbjct: 738  PDVFLAALLNSQPMGFYAPAQLVRDAREHGVEIRPICINASRWDSTLEGPERNDGLFAVR 797

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              +  +KG+    A  I+ A  D+PF S++D   R   K +    L  L  A A      
Sbjct: 798  LGMNLVKGLANEDAARIVAARGDRPFTSVDDLWRRAGVKGV---ALTHLAEADAFQ---- 850

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
                    L   ++ A W  K   ++   +FA        +                 + 
Sbjct: 851  ------PGLGLARREALWAIKALRDEPLPLFAAAAVMREAEELDVLLQPMRDGAEVARDY 904

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
               G     HP+   +  L + G+   ++ +     +++ +A +V+ +Q+  + +G  + 
Sbjct: 905  NRTGLTLRNHPVAFLRDDLSERGMVTCQQGLEARDRSSLSVAGLVLVRQRPGSAEG--VV 962

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++T  +         +P
Sbjct: 963  FMTLEDETAAINVIIWP 979


>gi|145628379|ref|ZP_01784180.1| DNA polymerase III subunit alpha [Haemophilus influenzae 22.1-21]
 gi|144980154|gb|EDJ89813.1| DNA polymerase III subunit alpha [Haemophilus influenzae 22.1-21]
          Length = 847

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/718 (44%), Positives = 443/718 (61%), Gaps = 16/718 (2%)

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
            +      Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYA
Sbjct: 2    RLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYA 61

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D RD VI +V   YG   V+QIITF
Sbjct: 62   LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAETYGRGAVSQIITF 121

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + + + A  +D  V 
Sbjct: 122  GTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPGMTL-AKAFEAEPQLQTAYDSDEEVQ 180

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
             L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT F+   +E AGL+
Sbjct: 181  ALIDMARKLEGVTRNAGKHAGGVVISPTLITDFSPLYCDNEGLHPVTHFDKNDVEYAGLV 240

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            KFDFLGL+TLT+++ +LD +  R       +VD++ IP DD E++ LL    T  +FQLE
Sbjct: 241  KFDFLGLRTLTIIKWALDMINVRMVREGKPRVDIAAIPLDDPESFELLKRAETTAVFQLE 300

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPL 677
            S GM+  ++ +QPDC EDIIALV+L+RPGP+ + +   + +RK+G+E++        H  
Sbjct: 301  SRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREEVSYPDAEYQHES 360

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F  GA 
Sbjct: 361  LKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEEMAKQRSVFKEGAV 420

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG+   +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTH+P EF+AA MT EMD
Sbjct: 421  KNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPAEFMAAVMTSEMD 480

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEA 856
            N +KI     +  +  +++ PP +N     F V +     Y + AIKGVG      ++ A
Sbjct: 481  NTDKIVGLYDECLRMGLKVTPPDINVGKHHFSVNEQGEIVYGIGAIKGVGEGPIEALVTA 540

Query: 857  SADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
              +   F  L D C+RVD KK+NRR  ESL+ +GA D  G  R  L ++L++  K +   
Sbjct: 541  RNEGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLGPHRAALSKNLEDALKASDQH 600

Query: 916  EKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
             K+      ++F     T  D +               + E+  LG Y S HP+  Y   
Sbjct: 601  AKDEAMGQTDMFGVLTETHEDVENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKE 660

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            L        ++     RG    +A ++VS +   T+KG+R+G  T  + +   +   F
Sbjct: 661  LSHYTSTRLKDLAPNRRGQISTVAGLLVSSRIAITKKGNRLGIATLDDRSGRLDLTLF 718


>gi|255535519|ref|YP_003095890.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium
            3519-10]
 gi|255341715|gb|ACU07828.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium
            3519-10]
          Length = 1567

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/1060 (30%), Positives = 529/1060 (49%), Gaps = 81/1060 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59
             + +   HS YS L+ +  +N ++ K   +   A+ I D  N+  A +F           
Sbjct: 262  DYFNFHNHSIYSSLQSSTHINELISKAMDNDLKAVGIVDLGNMMGAFKFVSEVEKTNAQI 321

Query: 60   -----------QKACAAGI----------QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS 98
                       +KA   G             I     +  + D  +     K       +
Sbjct: 322  KKTYQTYLENKEKADREGTAFTEKEPRKEPLIPVIGCEFYISDRPEQKQFTKDDPDRRTN 381

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +VLL     GY+ L++L S  Y+        RI    + E     LI LT G+ G +   
Sbjct: 382  VVLLAKNFSGYKNLVKLSSLGYVNGFYFGVPRISRKMIAEFKDN-LIALTAGTLGDVPST 440

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNS 217
                  Q  E+    +K  FG+  YV +Q H   +    ++V +  A  +++ ++A N +
Sbjct: 441  VLEFGEQKGEEVFKWWKNTFGEDFYVQIQNHEVEEEEHLNEVLLGFADQYDVKILAQNET 500

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEA 270
             + ++ D    D+L  +     +S          R   +   Y+KN  E+   F   P+A
Sbjct: 501  FYTNKSDANIQDILYCIKDGEKLSSPVGKGFGKRRGLPSKQFYIKNTDELKQSFIQFPDA 560

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKE--------CDDIQKEEENELRNKAVAGLEVR 322
             E   E+  +          +LP F   E         D  ++ E   LR+   AG E R
Sbjct: 561  FEAYTELLGKFEPYTLKRDVLLPEFDIPEEFLHDEDKTDGGKRGENAYLRHLTYAGAEKR 620

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
              +          + R+RLDFEL VIA+  + GYFLIV DF   A+K  + VGPGRGS A
Sbjct: 621  YPE-------ITDEIRKRLDFELEVIAKTGYPGYFLIVQDFCNEARKMGVWVGPGRGSAA 673

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GS  AY   IT++DP+ ++LLFERFLNP+R+SMPD DIDF  + RD++I++V  KYG   
Sbjct: 674  GSAVAYCTGITNVDPIEYNLLFERFLNPERISMPDIDIDFDDEGRDKIIKWVVEKYGKNN 733

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV------------SLQ 490
            VAQIIT+  L  K+A++D GR L +   + + + KLIP+ P   +              +
Sbjct: 734  VAQIITYSVLGGKSAIKDAGRVLDLSIPETNNIAKLIPSAPGMNIAKAFSKFEKLPPEDK 793

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
             +A + +   A   D   D +L  +Q++EG  R+   HA G++I    +S L+P+    +
Sbjct: 794  VLAQEMKDILANPTDERYD-VLYAAQRMEGCIRNTGIHACGVIITPEDISNLIPITIAAK 852

Query: 551  S-DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D+ V+QF+    E AGL+K DFLGL+TLT+++ ++  + +R   ++D+  +P DD +T
Sbjct: 853  DPDILVSQFDNSVAESAGLLKMDFLGLRTLTIIKHAIKLIKERHGTEIDIDHVPLDDAKT 912

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y L     T+GIFQ ES GM++ +  ++P    D+IA+ +LYRPGPI  I  + NRKN  
Sbjct: 913  YQLFQEGRTIGIFQYESPGMQKYMRELKPTKFADLIAMNALYRPGPIKYIPNFINRKNEI 972

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E+ V         L+ET G+ +YQEQVM ++Q L+ ++  EAD LR+AMGKK +  +DK 
Sbjct: 973  EETVYDLEETKEFLEETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKDRATLDKM 1032

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
              +F+    KN ++      I++    FA+Y FNKSH+  YA+I+Y TA++K +YP E++
Sbjct: 1033 YPKFLEEGQKNNLNVDKLNKIWKDWEAFAEYAFNKSHSTCYALIAYHTAYLKANYPAEYM 1092

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGT 847
            A+ MT  ++N ++I  F +D +   + ++ P+VN    +F V +   I + L AIKG+G+
Sbjct: 1093 ASVMTNNLNNTKQITMFMEDCKSIGVDVLGPAVNESQYEFSVNEKGQIRFGLGAIKGIGS 1152

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQ--- 903
              +  I++   ++ + ++ DF  ++ S ++N+RV ESLV AGA D    Y R Q      
Sbjct: 1153 GPSEAIVDGRKNEKYKNIYDFFEKIPSSQMNKRVAESLVVAGAFDEVDRYHRAQYFDIDI 1212

Query: 904  ----SLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQRV 958
                +++ + +Y Q  + ++     ++FA   +    ++  +       +      E+ +
Sbjct: 1213 TGKTTIERLLRYGQSFQDSKNEIENSLFADFAEEVKIEQPKINPAPEWQNMHMLNKEKEI 1272

Query: 959  LGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRL 997
            +GFY S HPLD Y+   + + G    +E +   +   + +
Sbjct: 1273 IGFYLSAHPLDEYRFQYQFLQGALSKKEILEGKKDEPVEI 1312



 Score = 42.3 bits (98), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 981  KGYEESVATIRGN-NIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEY 1027
              ++E  A         +A +V     K  +  G +I +VT  + +  Y
Sbjct: 1389 LSWKEKQALKNNTPEYMVAGLVTEYTVKDGKNSGEKIAFVTLEDYSGSY 1437


>gi|163757930|ref|ZP_02165019.1| putative dna polymerase iii alpha chain protein [Hoeflea
            phototrophica DFL-43]
 gi|162285432|gb|EDQ35714.1| putative dna polymerase iii alpha chain protein [Hoeflea
            phototrophica DFL-43]
          Length = 1123

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/1053 (25%), Positives = 468/1053 (44%), Gaps = 75/1053 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++V L   S++S L GA     ++ + A      IA+TD N+L   +     A  AG+ 
Sbjct: 4    PAYVELAAASNFSFLRGASHTEELVVQAARLGLGGIALTDRNSLAGVVRGHMAAKEAGLA 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
              +GC+L                     P I++       Y  L EL++        K  
Sbjct: 64   FAVGCRLVF---------------MDGTPDILVWPEDRAAYGNLCELLTLGKRR-APKGE 107

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              + L      G   L+ L   ++G        +  +     L   +  F D L++ L R
Sbjct: 108  CHLTLEDCLAHGRGLLMALVPPAAG-------SDRMKALPPVLERLRTAFPDHLHLALTR 160

Query: 189  HRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
            H G D  R  + + +LA TH++PLVA  + L+ + E     DVL  +     ++    R 
Sbjct: 161  HHGPDDQRHMAAIARLAQTHDVPLVAIGDVLYHAPERRPLQDVLTCIRERETLATIGTRL 220

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +   + +L++ +EM+ +F    +A+    ++  R  F L       P     E    +  
Sbjct: 221  KPNAERHLRSHAEMLHLFKGYEQAVAQAAKLFARICFSLDELRYQYPDAPLFEALSSEPL 280

Query: 307  EENE-LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               E L      GL+ R   G   K        + +  EL +I ++ ++ YFL V D ++
Sbjct: 281  PAQEALERLTAIGLKKRYPDGTPEK------VLKAIAHELRLIRKLDYAPYFLTVYDIVR 334

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S   Y L IT+++P +  LLFERF++ +R   PD D+DF  +
Sbjct: 335  FARSQDI-LCQGRGSAANSAVCYCLEITEVNPGKVDLLFERFISEERNEPPDIDVDFEHE 393

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG +R     T  + +A++A+R+VG+   +    +  +        + 
Sbjct: 394  RREEVIQYIYEKYGRDRAGLAATVITYRARSAIREVGKVFGLSNDAIAAISGTKWGGWSR 453

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             V      +D+R      AD  + ++L+++ ++ G  RH S H  G VI    LS L+P+
Sbjct: 454  EVD----PEDARRAGLDPADKHLAQMLDLASQITGFPRHLSQHVGGFVITRDKLSSLIPI 509

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                  D  + +++   +E  G++K D L L  LT ++K+ DFL      +  L+ +P  
Sbjct: 510  ENAAMEDRTIVEWDKDDLESLGMLKIDVLALGMLTCIRKAFDFLDTHYGRRETLASLPDG 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D  TY ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI  D +  Y 
Sbjct: 570  DRATYDMICRADTIGVFQIESRAQMSMLPRLRPRCYYDLVIEVAIVRPGPIQGDMVHPYL 629

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+ G+E +    P ++ +L +T GV ++QEQ M IA +  G+S  EAD LRRAM   + 
Sbjct: 630  RRRQGREPVSFPKPELEAVLGKTLGVPLFQEQAMNIAIVAGGFSPGEADKLRRAMATFRR 689

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               +   +++ + G  +NG  +  A + F  +  F +YGF +SHAA++A++ Y + W+K 
Sbjct: 690  VGTIGSFQKKMVEGMLRNGYEREFAEHCFRQIEGFGEYGFPESHAASFALLVYVSCWLKC 749

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD--------- 832
            HYP  F AA +  +        +  +DAR+  ++I P  +N    D  +           
Sbjct: 750  HYPDVFCAAILNSQPMGFYAPAQLIRDAREHGVEIRPVDINFSSWDALLEPDANPQPVSQ 809

Query: 833  ------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                        + +   L  +KG G   A  +++      +DS+ D   R     L+RR
Sbjct: 810  RHHDMADVMKHSHAVRLGLRQVKGFGKADAAMLVDKRGRG-YDSVRDLWMR---SGLSRR 865

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             +E L  A      G  R   + ++  +   +       + +   +FA    +   +   
Sbjct: 866  AIEQLAEADCFRSIGLERRDAIWAVKALDPLS-------SAERLPLFAIADTSNLQREPD 918

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                      +  N+ + L F    HP+   +  L + G +   +      G  +++A +
Sbjct: 919  IDLPPMPLGEQVINDYQSLSFSLKAHPISFLRANLARSGFRHNMDLAGIRSGVRVKVAGL 978

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V+ +Q+  + KG  + + T  +         +P
Sbjct: 979  VLVRQRPGSAKG--VVFETIEDETGVANIIVWP 1009


>gi|116629535|ref|YP_814707.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri ATCC 33323]
 gi|238852685|ref|ZP_04643095.1| DNA polymerase III subunit alpha [Lactobacillus gasseri 202-4]
 gi|311110823|ref|ZP_07712220.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri MV-22]
 gi|116095117|gb|ABJ60269.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus
            gasseri ATCC 33323]
 gi|238834831|gb|EEQ27058.1| DNA polymerase III subunit alpha [Lactobacillus gasseri 202-4]
 gi|311065977|gb|EFQ46317.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri MV-22]
          Length = 1038

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/1028 (31%), Positives = 530/1028 (51%), Gaps = 45/1028 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQ  SS++LLE    + ++ +        A+A+TD N  +  + F + A   GI+P++
Sbjct: 4    VSLQNLSSFTLLESPTKVKDLAENAKKKGYSALALTDVNITYGLVNFYKAAKETGIKPLL 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVR 130
            G Q          +   G         ++++    +GY+ ++ L S + LL + G++   
Sbjct: 64   GMQ----------LRINGLIDQANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENV 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQR 188
            + L  L++     +I+        + +    N+  +    +   K        +Y+ +  
Sbjct: 114  LELEELKKYLGHLVIITPSNLHSEL-KMLQTNNPNMGANYVRILKDAVPTSSLVYLGVYA 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
             +G   Y    +  LA   EL L A  +  +L+  +      L A+  +T +   ++  +
Sbjct: 173  DQGQQEYIN-YLRSLATQFELSLAAVEDGQYLNRNEQFLRRTLQAIKSNTHLENVEQLAK 231

Query: 248  VTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                HYLK   E+   +   ++ +ALEN  +I + C+  +    P LP+F + +      
Sbjct: 232  QAGSHYLKTSEELQVNYRKFEIEDALENAEKIGQLCNAKITFQDPQLPKFKQNKFP---- 287

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L + A  GL  R       KG   + Y++RLD+EL VI  M F  YFLIV D + 
Sbjct: 288  TSKEYLHSLAQNGLAKRF------KGQIPERYQKRLDYELKVINEMGFDDYFLIVWDVMN 341

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A   +I  GPGRGS AGS+ +YAL IT++DPL ++LLFERFLNP R  MPD D+D   +
Sbjct: 342  FAHSVHITTGPGRGSAAGSLVSYALRITEVDPLEYNLLFERFLNPARQQMPDIDLDIPDN 401

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI+Y+  KYG    AQI+TFG+L AK  L+DV R   +   +  R    IP+    
Sbjct: 402  RRDEVIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHAKGK 461

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                +A       +     +     L   ++ LE L RH S HAAG+VI D  L+++V +
Sbjct: 462  ITLAEAYQKSKELQLLVNTNTFSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVGL 521

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                   +PVTQ     +E  GL+K DFLGL+ LT+L   +  L   GV++D + IP +D
Sbjct: 522  QAGPL-GIPVTQQTKLNVESLGLLKIDFLGLRNLTILGNIIAALKSEGVEIDPNQIPLND 580

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             ET  L     T  +FQ ES G+++ LE + PD  EDI+A+ +LYRPGP++NI  + NRK
Sbjct: 581  QETLALFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPMNNIGHFINRK 640

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKE++    P +  +L  T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK  + +
Sbjct: 641  HGKERVQYPDPSLKKILGPTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNADVI 700

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             K++E+FI GA K G  K +A  +++ +A+FA+YGFN+SHA AY+ I++  A+ K HYP 
Sbjct: 701  QKEREKFIQGAVKLGRRKEVAEQVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYPG 760

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  + +   + N  KI ++   A++  I+ +PP +     DF + + +I   L AI+G+
Sbjct: 761  AFYLSLLNSNIGNRNKIAQYLMQAQEAGIKTLPPDIENSQADFSLENGKILVGLKAIRGL 820

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
             +   + I+E    +P  S+ DF  ++D+  L+   + +L+ AGA D    +R +LL+  
Sbjct: 821  RSDLLKQILEI--KRPIKSMTDFLWKIDNNLLSADAIANLIKAGAFDRLAPNRNELLKIN 878

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             ++ +  +    N      ++F     T   KI  EK     ++ +   E   +GF    
Sbjct: 879  KDLVESVKMAGSN-----LSLF----ETLEPKIEEEKMP--TAAEKSAMEVEAMGFSTGI 927

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            +P+   +   RK   K  +   +  +G  +     ++  +Q  T+KG  + +  FS+ + 
Sbjct: 928  NPIIAVQKYARKYNAKRLQAFESNEQGIAV---GKLMRIKQITTKKGDNMAFAVFSDSSG 984

Query: 1026 EYEANFFP 1033
            + +   FP
Sbjct: 985  DKDFTIFP 992


>gi|311106704|ref|YP_003979557.1| DNA polymerase III subunit alpha 2 [Achromobacter xylosoxidans A8]
 gi|310761393|gb|ADP16842.1| DNA polymerase III, alpha subunit 2 [Achromobacter xylosoxidans A8]
          Length = 1074

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/1056 (26%), Positives = 447/1056 (42%), Gaps = 78/1056 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            L + P +  LQ  S++S L+GA     ++D+ A     A+AITD  +L   +    +A A
Sbjct: 12   LAQLPGYAELQCQSNFSFLQGASHPEELIDRAAELGYAALAITDECSLAGVVRAHVEARA 71

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              +  IIG    +              P      + LL  T EGY  L EL++       
Sbjct: 72   RKLPLIIGATFQL-----------RAAPDAAPLGLTLLAQTREGYGNLSELITLARTR-A 119

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K   R+    L +       +        I    +   +    ++     ++F  R +V
Sbjct: 120  PKGEYRLAPEDLTDPPAGYAHLRHLPECLAILSPAYGTDADRMAEQARWLARVFPHRAWV 179

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L   HR  D    + V Q A   ELPLVA              HD L  +     VSQ 
Sbjct: 180  GLTLLHRSRDDLHRAAVEQAAQAAELPLVALGQVQMHLRSRKPLHDTLTGIRTRQPVSQC 239

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                    + +L+ R  + +++   P+A+  T+ +ARRC+F L       P  I      
Sbjct: 240  GYELSGNAEQHLRTRMRLANLYP--PQAMAQTLAVARRCAFSLDELRYEYPDEIIPRG-- 295

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                    LR + +AG   R   G             +++ EL +I  + +  YFL V D
Sbjct: 296  --HTPATYLRQETLAGAARRFPLGT------PDSVTTQIEKELALITDLHYEAYFLTVYD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +Q+A+   I +  GRGS A S   Y L IT++DP+R + LFERF++ +R   PD D+DF
Sbjct: 348  IVQFARGQGI-LCQGRGSAANSAVCYCLGITEVDPVRGNNLFERFISKERNEPPDIDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI+Y+  KYG ER A      S + ++ LRD G AL +    +D + +     
Sbjct: 407  EHQRREEVIQYIYGKYGRERAALTAVVISYRPRSVLRDTGSALGVDLGVIDAVARAHQWW 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                  L+ +       E+++A         ++Q L G  RH S H  G VI    LS+L
Sbjct: 467  DGKKEMLRTLGACGLDPESQVA----RHWASLAQTLMGFPRHLSQHPGGFVISRGKLSRL 522

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601
            VP+     +D  V Q++   ++  GL+K D L L  L+ L+++L+   QR    + L  I
Sbjct: 523  VPIENAAMADRSVVQWDKDDLDALGLLKVDVLALGMLSALRRTLELAGQRRGQPLRLQDI 582

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV-- 659
            P DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +  
Sbjct: 583  PPDDTPTYDMICDADTIGVFQIESRAQMTMLPRLRPRQYYDLVVQVAIVRPGPIQGGMVH 642

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+ GKE        +  +L  T GV I+QEQVMQIA + +G++  E+D LRR+M  
Sbjct: 643  PYLRRRQGKEPETYPSEKVRGVLSRTMGVPIFQEQVMQIAVVAAGFTPGESDQLRRSMAA 702

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K K  +DK + + + G   +G     A  +F  +  F +YGF +SHAA++A+++Y ++W
Sbjct: 703  WKRKGGVDKYRTKLVGGLLAHGYKLDFAEALFRQIEGFGEYGFPESHAASFALLAYASSW 762

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831
            +K H P  FLAA +  +        +  QDAR+  + ++PP V     D  +        
Sbjct: 763  LKRHEPEAFLAALLNSQPMGFYAPAQLVQDARRHGVCVLPPDVTISGWDSALETLPEGHP 822

Query: 832  ----------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                               +   L+ I+G+    AR I +A A  PF    D   R    
Sbjct: 823  GARRTTHPHAPSTDGPRPAVRLGLSLIQGMREDAARRIEDARATAPFADTGDLARRAALN 882

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            + +   L +                 L++L   ++ A W         + +    +    
Sbjct: 883  RHDLNALAAG--------------DALRTLAGHRRQASWEAAASVQSRDLL----RDAAI 924

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
             +    + S  +       + R +G     HP+ + +P L     +              
Sbjct: 925  QETQAPQLSAPSEGQTVAADYRSVGLTLHSHPVALLRPQLAARNFQPASVLNGYPDKRVA 984

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            R   +V  +Q+ +T KG  + +VT  +         
Sbjct: 985  RACGIVTVRQRPQTAKG--VIFVTLEDETGPVNVVV 1018


>gi|172064770|ref|YP_001812420.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MC40-6]
 gi|171998255|gb|ACB69171.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MC40-6]
          Length = 1049

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/1035 (27%), Positives = 471/1035 (45%), Gaps = 59/1035 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AA + 
Sbjct: 10   PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAANMP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             II          + ++T     P     ++       +GY  L E +S   +  + K +
Sbjct: 70   LII--------GSHFRLTAADGAPALAFTAL---AMNRDGYGNLCEFISLGRMRGK-KGT 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    ++        + T      I    F  + Q  + ++  F ++FGDR +V L  
Sbjct: 118  YRLAPLDVEHPEAPFTHLRTLPDCIAILSPDFPANEQRLDAQVEWFARVFGDRAWVALTL 177

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H R  D      V ++A  H +P+VAT+  L          DVL  +     V++     
Sbjct: 178  HARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGRPVTECGYEL 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  + +++     ALE TV +ARRC+F+L       P  +     D    
Sbjct: 238  APNAERHLRSRLRLANLYP--AGALEETVRVARRCTFLLDDLKYEYPDELVPAGTDATT- 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR +   G   R   G         D + +++ EL +IA +K+  YFL V D +Q+
Sbjct: 295  ---YLREQTYIGARRRFPAGI------PIDVQAQIEHELQLIADLKYEAYFLTVYDIVQF 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I +  GRGS A S   Y L +T++DP R S+LFERF++ +R   PD D+DF   R
Sbjct: 346  AREQGI-LCQGRGSAANSSVCYCLGVTEVDPSRQSMLFERFISKERNEPPDIDVDFEHQR 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++Y+  KYG +R A      + + ++ALR+ G+AL +  + VDR+ K      +  
Sbjct: 405  REEVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDPAIVDRVAKQHHWFDSRA 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              LQ  A+     EA    P   +    + +L G  RH S H+ G VI    L++LVP+ 
Sbjct: 465  DLLQRFAEAGLDPEA----PLNQQWAGFAAQLLGYPRHLSQHSGGFVISRGKLTRLVPVE 520

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                 D  + Q++   IE  G++K D L L  L++++++LD +  +RG   +L  IP +D
Sbjct: 521  NAAMEDRSIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISEKRGETFELQDIPAED 580

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
              TY +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGP+   +   +  
Sbjct: 581  MATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQGGMVHPFLR 640

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+ G E++      ++  L  T GV I+QEQVMQ+A L +G+S  EAD LRRAM   K K
Sbjct: 641  RRQGLERVTFPSEGMEKALARTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKRK 700

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              ++   ER ++G  + G  +  A +IF  +  F +YGF +SHAA++A++ Y +AW++ H
Sbjct: 701  GGLEPYHERLVNGMLERGYDREFAESIFAQIKGFGEYGFPESHAASFALLVYSSAWLRRH 760

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI----YYS 838
             P  FL A +  +        +  QDAR+  ++++P  VN    D  +            
Sbjct: 761  EPAVFLTALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSAIEGPTTEAPVRLG 820

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             + ++G+    A  I  A A + F  + D   R    + + +VL              +R
Sbjct: 821  FSLLRGMREDVAGRIELARAARSFVDVADLARRARLDRHDLQVL--------------AR 866

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
               L+SL    + A            ++             L + S     V    +   
Sbjct: 867  ANALRSLAGGNRRAALWLAAAAVPDRDLL-RATERDDAVPALPQASEGKEIV---TDYHA 922

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +GF    HPL + +  L    ++  E+      G   R   +V  +Q+  T  G  + ++
Sbjct: 923  MGFTLGRHPLALLRERLALDRLQSAEQLQTLRSGQLARACGLVTVRQRPGTANG--VLFM 980

Query: 1019 TFSEPAKEYEANFFP 1033
            T  +   +     +P
Sbjct: 981  TLEDETGQVNVILWP 995


>gi|154244758|ref|YP_001415716.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2]
 gi|154158843|gb|ABS66059.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2]
          Length = 1059

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/1044 (27%), Positives = 460/1044 (44%), Gaps = 77/1044 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P++  LQV S +S L GA S   +    AA    A+A+TD N L   +   + A  AG
Sbjct: 2    SAPAYAELQVTSHFSFLRGASSAEELFATAAAMGIGALAVTDRNTLAGIVRAHEAAKEAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ IIGC                +       S+++  +    Y RL  L+S   L     
Sbjct: 62   VRLIIGC----------------RLDLVCGMSVLVYPTDWAAYSRLCRLLS---LGKGRA 102

Query: 127  QSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
               R  L W   +   EGLI++                 +    RL   +  FGDR Y+ 
Sbjct: 103  GKARCHLEWDDLVAYGEGLIVVLAPDLAD----------ETCGLRLRRLRDAFGDRAYLG 152

Query: 186  LQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L  R R  D+ R  ++  LA    +P V TN+ LF         DV+ A+ H+  V    
Sbjct: 153  LTLRRRPNDQMRLWELSTLAAGLGVPTVVTNDVLFHEPGRRILQDVVTAIRHNVTVDALG 212

Query: 245  -RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R     D YLK   EM  +F+  PEAL  T EIA RC F L       P    +E DD 
Sbjct: 213  IRRERHADRYLKAPGEMHRLFARWPEALARTREIADRCRFSLDELRYQYP----EERDDP 268

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                +  L      G   R  +G        ++    L  EL +I ++ ++ YFL V   
Sbjct: 269  ALSPQETLERLTWEGAASRYPEGV------PEEVTAALKHELALIGKLDYAPYFLTVNSI 322

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+   I    GRGS A S   Y L IT IDP R  LLFERF++ +R   PD D+DF 
Sbjct: 323  VRFARSRGILR-QGRGSAANSAVCYVLGITAIDPGRNDLLFERFVSEERREPPDIDVDFE 381

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EVI++V   YG ER A   T    ++K ALRDVG+A+ +P   +  L   +    
Sbjct: 382  HERREEVIQWVYEHYGRERAALTATVIRYRSKGALRDVGKAMGLPEDLIQTLSGQLWGWS 441

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               V+ Q + D          D  +   LE++ +L G  RH S H  G V+    L  LV
Sbjct: 442  EAGVTEQQLRD----LNLNPEDRRLRLTLELAAQLRGAPRHLSQHPGGFVLTHDRLDDLV 497

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602
            P+         + +++   I+    +K D L L  L+ +++ LD LA+   +++DL+ IP
Sbjct: 498  PIEPAAMEGRQIIEWDKDDIDALRFMKVDVLALGMLSCMRRGLDLLAEHKDIRLDLASIP 557

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D +  
Sbjct: 558  AEDPRTYAMIRKADTLGTFQIESRAQMSMLPRLKPRTYYDLVVQVAIVRPGPIQGDMVHP 617

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+ G E++    P ++ +L +T GV ++QEQ M++A   +G++  EAD+LR++M   
Sbjct: 618  YLRRREGLEEVDYPRPELEKVLGKTLGVPLFQEQAMRVAIECAGFTAGEADLLRKSMATF 677

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    + K ++R ISG    G  +  A   F+ L  F  YGF +SHAA++A+I+Y +AW+
Sbjct: 678  KHTGGVSKFRDRLISGMIARGYEEEFAARTFQQLEGFGSYGFPESHAASFALIAYASAWL 737

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------N 833
            K  +P  F AA +  +        +  +DAR+  +++ P  +N    D  +         
Sbjct: 738  KCWHPDVFCAALLNAQPMGFYAPAQIVRDAREHGVEVRPVCINASRWDCTLEPTGDESRF 797

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +   L  +KG+    A  ++ A  D+ F S++D   R          + +    G    
Sbjct: 798  AVRLGLRMVKGLANAHAAAVVAARGDETFTSVDDLWRRAGVPVAALDQIAAAD--GFRPA 855

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-----VENS 948
            FG +R +           AQW  K   ++   +FA         +              +
Sbjct: 856  FGLARRE-----------AQWAIKGLRDEELPLFAAASEREGQTVPELDEPAIALRAMPA 904

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
                  +   +G     HP+   +  L +  I    E++A      +  A +V+ +Q+  
Sbjct: 905  GREVVEDYGHIGLSLRRHPVSFLREDLARRRIVSCAEAMAAPDQRWLEAAGIVLVRQRPG 964

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            +  G  + ++T  +         +
Sbjct: 965  SANG--VMFITLEDETGIANLVVW 986


>gi|300361563|ref|ZP_07057740.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus gasseri
            JV-V03]
 gi|300354182|gb|EFJ70053.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus gasseri
            JV-V03]
          Length = 1038

 Score =  814 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/1028 (32%), Positives = 531/1028 (51%), Gaps = 45/1028 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQ  SS++LLE    + ++ +        A+A+TD N  +  + F + A   GI+P++
Sbjct: 4    VSLQNLSSFTLLESPTKVKDLAENAKKKGYSALALTDVNITYGLVNFYKAAKETGIKPLL 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVR 130
            G Q          +   G         ++++    +GY+ ++ L S + LL + G++   
Sbjct: 64   GMQ----------LRINGLVDQANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENV 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQR 188
            + L  L++     +I+        + +    N+ ++    + T K        +Y+ +  
Sbjct: 114  LELEELKKYLGHLVIITPSNIHSEL-KMLQANNPKMGANYIRTLKDSVPTSSSIYLGVYA 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
             +G   Y    +  LA   EL L A  +  +L+  +      L A+  +T +   ++  +
Sbjct: 173  DQGQQEYIN-YLRSLATQFELLLTAVEDGQYLNRNEQFLRRTLQAIKSNTHLENIEQLAK 231

Query: 248  VTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                HYLKN  E+   +   ++ +ALEN  +I + CS  +    P LP+F + +      
Sbjct: 232  QAGSHYLKNSEELQVNYRKFEIEDALENAEKIGQICSAQITFQDPQLPKFKQNKFP---- 287

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L + A  GL  R       KG   + Y+ RLD+EL VI  M F  YFLIV D + 
Sbjct: 288  TSKEYLHSLAQNGLAKRF------KGRIPEKYQARLDYELKVINEMGFDDYFLIVWDVMN 341

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A   +I  GPGRGS AGS+ +YAL IT++DPL ++LLFERFLNP R  MPD D+D   +
Sbjct: 342  FAHSVHITTGPGRGSAAGSLVSYALRITEVDPLEYNLLFERFLNPARQQMPDIDLDIPDN 401

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI+Y+  KYG    AQI+TFG+L AK  L+DV R   +   +  R    IP+    
Sbjct: 402  RRDEVIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHAKGK 461

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                +A       +     +     L   ++ LE L RH S HAAG+VI D  L+++V +
Sbjct: 462  ITLAEAYQKSKELQLLVNTNAFSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVGL 521

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                   +PVTQ     +E  GL+K DFLGL+ LT+L   +  L   GV++D + IP +D
Sbjct: 522  QAGPL-GIPVTQQTKLNVESLGLLKIDFLGLRNLTILGNIIAALKSEGVEIDPNQIPLND 580

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             ET  L     T  +FQ ES G+++ LE + PD  EDI+A+ +LYRPGP++NI  + NRK
Sbjct: 581  QETLALFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPMNNIGHFINRK 640

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKEK+    P +  +L  T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK  + +
Sbjct: 641  HGKEKVQYPDPSLKKILGPTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNADVI 700

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             K++E+FI GA K G  K IA  +++ +A+FA+YGFN+SHA AY+ I++  A+ K HYP 
Sbjct: 701  QKEREKFIQGAVKLGRRKEIAEQVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYPG 760

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  + +   + N  KI ++   A++  I+ +PP +     DF + + +I   L A++G+
Sbjct: 761  AFYLSLLNSNIGNRNKIAQYLMQAQEAGIKTLPPDIENSKADFSLENGKILVGLKAVRGL 820

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
             +   + I+E    +P  S+ DF  ++D+  L+   + +L+ AGA D    +R +LL+  
Sbjct: 821  RSDLLKQILEI--KRPIKSMTDFLWKIDNNLLSADAIANLIKAGAFDRLAPNRNELLKIN 878

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             ++ +  +    N      ++F     T   KI  EK     ++ +   E   +GF    
Sbjct: 879  KDLVESVKMAGSN-----LSLF----ETLEPKIEEEKMP--TAAEKSAMEVEAMGFSTGI 927

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            +P+   +   RK   K  +      +G  +     ++  +Q  T+KG  + +  FS+ + 
Sbjct: 928  NPIIAVQKYARKYNAKRLQAFENNEQGIAV---GKLMKIKQITTKKGDNMAFAVFSDSSG 984

Query: 1026 EYEANFFP 1033
            + +   FP
Sbjct: 985  DKDFTIFP 992


>gi|182679714|ref|YP_001833860.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica
            ATCC 9039]
 gi|182635597|gb|ACB96371.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica
            ATCC 9039]
          Length = 1090

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/1042 (27%), Positives = 457/1042 (43%), Gaps = 67/1042 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  +  LQV S +S L GA S   +  + A     A+A+ D ++L   +   Q A A
Sbjct: 1    MNRSARYAELQVTSHFSFLRGASSCEELFAQAALLGIEALAVVDRHSLAGIVRAHQAAKA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+ IIGC                +       S+++  +    Y RL  L+S       
Sbjct: 61   TGIRLIIGC----------------RLDLADGMSVLVYPTDRASYARLCRLLSLGKQRG- 103

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            GK    +    L   G   L +L    +  I                      F DR Y+
Sbjct: 104  GKAQCHLDWLDLVAHGEGLLTILIAEKADEICGLHLR-----------RLHDTFKDRAYL 152

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L  HR   D+ R  Q+  LA    +P V TN+ LF         DV+  + H   + + 
Sbjct: 153  ALTLHRRPNDQLRLHQLAVLAARFRVPTVVTNDILFHEPARRILQDVVTCIRHGCTIDEA 212

Query: 244  D-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              R     D YLK   EM  +FS  PEAL  T+EI  RC F L+      P    +E   
Sbjct: 213  GFRRERHADRYLKPPEEMHRLFSLYPEALARTLEITDRCQFSLEELTYQYP----EEKTM 268

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 +  L    + G      +G   K       +  LD EL +IA++ ++ YFL V  
Sbjct: 269  PGLTAQEALTRLTLKGAADHYPEGVPDK------VQALLDHELELIAKLNYAPYFLTVNA 322

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             + +AK   I +  GRGS A S   Y L IT I P +  LLFERF++ +R   PD D+DF
Sbjct: 323  IVHFAKTEGI-LCQGRGSAANSAVCYVLGITSIAPDQHDLLFERFVSEERREPPDIDVDF 381

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+ VI+++   YG +R A   T    +AK ALRDVG+AL +P   +  L       
Sbjct: 382  EHERREIVIQWIYKTYGRDRAALCATVIRYRAKGALRDVGKALGLPEDLLTMLSSQTWVW 441

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                + +++  +        L DP +   L+++++L G  RH S H  G V+    L +L
Sbjct: 442  SKQGLDVKSAKE----LNLNLDDPRLRLTLDLARELIGTPRHLSQHPGGFVLTHDRLDEL 497

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLI 601
            VP+     +D  V +++   IE    +K D L L  L+ +++S + LA+     + L+ I
Sbjct: 498  VPIEPAAMTDRQVIEWDKDDIEVLKFMKVDVLALGMLSCMKRSFNLLAEHKKLALALTSI 557

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D + 
Sbjct: 558  PSEDPHTYAMIQRADTIGVFQIESRAQMSMLPRLKPKTFYDLVIEVAIVRPGPIQGDMVH 617

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+ GKE        +  +L++T GV ++QEQ M+IA   +G++  EAD LRR+M  
Sbjct: 618  PYLRRREGKEDPDLPRAELKNVLEKTLGVPLFQEQAMRIAIECAGFTPGEADQLRRSMAT 677

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K    ++  K++ ++G   NG     A  IF  L  F  YGF +SHAA++A+++Y ++W
Sbjct: 678  FKHTGTINTFKDKLVNGMVANGYEHAFAERIFHQLEGFGSYGFPESHAASFALLAYASSW 737

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------D 832
            +K  +P  F AA +  +        +  +DAR   ++I P  VN    D  +        
Sbjct: 738  IKCWHPDVFCAALLNSQPMGFYAPAQIVRDARNHGVEIRPVCVNHSHWDCTLEATGDEKR 797

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL- 891
              +   +  +K +    A  I+ A AD+PF S+ED   R     +    L +L  A A  
Sbjct: 798  FALRLGMRMVKRLSNQDAATIVAAKADQPFLSIEDLWHRA---GVPVSALVALAEADAFA 854

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
              FG +R + L ++  ++     +    + +               +TL   +     V 
Sbjct: 855  PTFGIARRKALWTIKALRDNPLPLFAAASAREAAF---VSEIREPAVTLTPMAAGGEVV- 910

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +   +G     HP+   +  L +  I    E +       I  A +V+ +Q+  + K
Sbjct: 911  --EDYVSVGLTLREHPIAFLRGDLARRRIATCAEVIHARDRCWIETAGLVLVRQRPGSAK 968

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  + ++T  +         +P
Sbjct: 969  G--VIFITIEDETGIANLVIWP 988


>gi|297205881|ref|ZP_06923276.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus jensenii
            JV-V16]
 gi|297149007|gb|EFH29305.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus jensenii
            JV-V16]
          Length = 1040

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/1024 (31%), Positives = 527/1024 (51%), Gaps = 40/1024 (3%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS+SLL+  + +++++         ++A+TD N  +  ++F   A    ++P++G 
Sbjct: 7    LQTLSSFSLLKSPILIDDLVKDAVDKGYSSLALTDINVTYGLVDFYLAAKKVNLKPLLGM 66

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
             + ++          G         ++ +    +GY+ ++ L S + L  D G +   + 
Sbjct: 67   TIRLN----------GIVDQAHRYDLISIAKNNQGYKNILRLSSAINLKTDNGDERKVLT 116

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +  ++ + ++    +  + R    N+ ++    +   +K+      + L  + G 
Sbjct: 117  LKQLAKYLSDQVFIVPANITSEL-RYLAENNEKLGSDFIRELQKIIPSSSDLYLGAYAGK 175

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PD 251
            ++        +A    LPL AT +  +L   D+     L A+     +       +    
Sbjct: 176  NQPYIDYAKSMAKQFNLPLAATEDVQYLQASDHFLVKTLRAIEQGQKLVDTSSLALQKGS 235

Query: 252  HYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HYL+   E+VS +++     AL N  +IA  C   +    P LP++ +    D +     
Sbjct: 236  HYLRTSGELVSAYNECSILSALHNAAKIADECKASVTFTQPELPKYKQSFAPDSKI---- 291

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR     GL  R     I      + Y++RLD+EL +I +M F  YFLIV D I +A  
Sbjct: 292  YLRQLVQKGLAKRFNGQPI-----PEIYQKRLDYELKIIDQMGFDDYFLIVWDVINYAHS 346

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             +I  GPGRGS AGS+ AY+L IT++DP++++LLFERFLNP R  MPD D+D   +RRDE
Sbjct: 347  VDITTGPGRGSAAGSLVAYSLAITEVDPIKYNLLFERFLNPARAQMPDIDLDIPDNRRDE 406

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            +I+Y+  KYG +  AQI+TFG+L AK ALRD  R   +   Q  +    IP   +     
Sbjct: 407  IIKYMFEKYGMDHAAQILTFGTLAAKQALRDCARVFGLTTIQASKFTHAIPFSKSKITLA 466

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            QA  +    +    A      L + + +LEG+ RHAS HAAG+VI D+ ++Q+  +    
Sbjct: 467  QAYQESKALQLLVNASELNKLLFKTAMRLEGIPRHASIHAAGLVISDKSIAQIAGLQ-AG 525

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ     +E+ GL+K DFLGL+ LT+L  +++ LA+ G+K+D   IP DD +T 
Sbjct: 526  TLGIPVTQQTKAHVEELGLLKIDFLGLRNLTILGDTIELLAKDGIKLDPKRIPLDDIKTL 585

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  +FQ ES G++  L  + PD  ED++A+ +LYRPGPI NI  + NRK GKE
Sbjct: 586  QLFQKGKTDAVFQFESQGIKNVLRRLHPDSFEDVVAVNALYRPGPIQNIDHFINRKQGKE 645

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I      +  +L+ T G+++YQEQVMQ AQ+++G+SL EAD+LRRAM KK ++ +D+++
Sbjct: 646  PITYPDSSLAKLLQPTYGILVYQEQVMQTAQIMAGFSLGEADLLRRAMSKKKQDLIDQER 705

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E+FI+GA KNG  +  A  ++  + +FA+YGFN+SHA AY+ I++  A++K HYP  F  
Sbjct: 706  EKFIAGAVKNGHPQATASKVYAYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHYPAAFFT 765

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +     N  K  ++   A++  ++I+ P +N    D+ + + +I   L AIKG+    
Sbjct: 766  ALLNSVSANRVKAGEYITQAQEAGVKILAPDINNSQTDYYLVNGQIQVGLKAIKGLRVDF 825

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
             R+I     +  F SL DF  ++D+K L+ + + +++ AG  D    +R  LL +   I 
Sbjct: 826  LRNIAGLPKN--FTSLADFLRKIDAKFLSEQAIAAMIKAGCFDKIDENRKMLLANCKEIV 883

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +  ++             +   G     I LE+    NS+ +   E+ VLGF  +  P+ 
Sbjct: 884  ENIKFT------GQNETLSEGLGG----IRLEQAPAPNSNEKATMEEEVLGFSTTKTPIL 933

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            V +    +   +          G  +     ++  +  +T+KG  + + TF + + E E 
Sbjct: 934  VVQKYAERFNAQALNSFTVNETGIAV---GKLIKLKLIRTKKGDTMAFSTFRDASSEQEI 990

Query: 1030 NFFP 1033
              FP
Sbjct: 991  TIFP 994


>gi|238855206|ref|ZP_04645525.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 269-3]
 gi|260664570|ref|ZP_05865422.1| DNA polymerase III alpha-chain [Lactobacillus jensenii SJ-7A-US]
 gi|282932500|ref|ZP_06337925.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 208-1]
 gi|238832098|gb|EEQ24416.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 269-3]
 gi|260561635|gb|EEX27607.1| DNA polymerase III alpha-chain [Lactobacillus jensenii SJ-7A-US]
 gi|281303449|gb|EFA95626.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 208-1]
          Length = 1039

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1024 (31%), Positives = 529/1024 (51%), Gaps = 40/1024 (3%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS+SLL+  + ++ ++         ++A+TD N  +  ++F   A  A + P++G 
Sbjct: 6    LQTLSSFSLLKSPILVDELVKDAVDKGYSSLALTDINVTYGLVDFYLAAKKANLNPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
             + ++          G         ++ +    EGY+ L+ L S + L  D G +   + 
Sbjct: 66   TIRLN----------GMIDQAHRYDLISIAKNNEGYKNLLRLSSAINLKTDNGDERKVLT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  + +  ++ + ++    +  + R    N+ ++    L   +K+      + L  +   
Sbjct: 116  LKQVAKYLSDQIFIIPANVTSEL-RYLSENNEKLGSDYLRELQKIIPSSSDLYLGVYASK 174

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PD 251
            ++   + V  LA    LPL A  +  +L   D      L A+     +       +    
Sbjct: 175  NQPYINYVKALAAQFNLPLAAAEDVQYLQASDQFLVKTLRAIEQGQKLVDTSSLALQKGS 234

Query: 252  HYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HYL++  E+V+ +++    EAL N  +IA  C   +    P LPR+ +    +     + 
Sbjct: 235  HYLRSSGELVAAYNENGIIEALHNAAKIADECKAEVIFTQPELPRYRQ----NFAPSSKI 290

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR     GLE R     I      + Y++RLD+EL +I +M F  YFLIV D I +A  
Sbjct: 291  YLRQLVQKGLENRFKGQNI-----PEIYQKRLDYELKIINQMGFDDYFLIVWDVINYAHS 345

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             +I  GPGRGS AGS+ AY+L IT++DP++++LLFERFLNP R  MPD D+D   +RRDE
Sbjct: 346  VDITTGPGRGSAAGSLVAYSLAITEVDPIKYNLLFERFLNPARAQMPDIDLDIPDNRRDE 405

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            +I+Y+  KYG +  AQI+TFG+L AK ALRD  R   +   Q  +    IP         
Sbjct: 406  IIKYMFEKYGMDHAAQILTFGTLAAKQALRDCARVFGLTTVQASKFTHAIPFSKVKITLS 465

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            QA  +    +    A      L   + +LEG+ RHAS HAAG+VI D+ ++Q+  +    
Sbjct: 466  QAYQESKALQLLVNASELNKLLFRTAMRLEGIPRHASIHAAGLVISDKSIAQIAGLQ-AG 524

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ     +E+ GL+K DFLGL+ LT+L ++++ LA+ G+K+D   IP +D +T 
Sbjct: 525  TLGIPVTQQTKAHVEELGLLKIDFLGLRNLTILGETVELLAKDGIKLDPKQIPLNDAKTL 584

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  +FQ ES G++  L+ + PD  ED++A+ +LYRPGPI NI  + NRK GKE
Sbjct: 585  QLFQKGQTDAVFQFESQGIKNVLKRLHPDSFEDVVAVNALYRPGPIQNIDHFINRKQGKE 644

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I      +  +LK T G+++YQEQVMQ AQ+++G+SL EAD+LRRAM KK ++ +D+++
Sbjct: 645  AITYPDSSLAQLLKPTYGILVYQEQVMQTAQIMAGFSLGEADLLRRAMSKKKQDLIDQER 704

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E+FI+GA KNG  +  A  ++  + +FA+YGFN+SHA AY+ I++  A++K HYP  F  
Sbjct: 705  EKFITGAVKNGHPQATASKVYAYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHYPAAFFT 764

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +     N  K  ++   A++  ++I+PP +N    D+ + + +I   L AIKG+    
Sbjct: 765  ALLNSVSANRIKAGEYITQAQEVGVKILPPDINQSQTDYSLLNGQIQVGLKAIKGIRVDF 824

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
             ++I     +  F SL DF  ++D+K L+ + + +++ AG  D    +R  LL +   I 
Sbjct: 825  LKNIANLPKN--FSSLADFLRKIDAKFLSEQTIAAMIKAGCFDKIDKNRKMLLLNCKEIV 882

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +  ++             +   G     I LE+    N++ +   E+ VLGF  +  P+ 
Sbjct: 883  ENIKFT------GQNETLSEGLGG----IRLEQAPAPNANEKATMEEEVLGFSTTKTPIL 932

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            V +    +   +          G  +     ++  +  +T+KG  + + TF + + E E 
Sbjct: 933  VVQKYAERFNAQTLNSFTVNETGIAV---GKLIKLKLIRTKKGDTMAFSTFRDASSEQEI 989

Query: 1030 NFFP 1033
              FP
Sbjct: 990  TIFP 993


>gi|54022882|ref|YP_117124.1| error-prone DNA polymerase [Nocardia farcinica IFM 10152]
 gi|71151830|sp|Q5Z1D1|DNAE2_NOCFA RecName: Full=Error-prone DNA polymerase
 gi|54014390|dbj|BAD55760.1| putative DNA polymerase III alpha subunit [Nocardia farcinica IFM
            10152]
          Length = 1146

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1073 (26%), Positives = 475/1073 (44%), Gaps = 91/1073 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS+YS L+GA     ++++       AIA+TD +  +  + F++ A   GI  
Sbjct: 61   PYAELHAHSAYSFLDGASQPEELVEEAVRLGLEAIALTDHDGFYGTVRFAEAAKEWGIAT 120

Query: 70   IIGCQ-----LDIDMQDNLKMTNQGK-------------------------TPFPTVPSI 99
            + G +          + + +   +G+                          P P  P +
Sbjct: 121  VFGAELSLGVARPAPRRSARKAARGRGRAVRYAATPEFEHAAAPDSAPRTGEPDPPGPHL 180

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++L    EGY+RL   ++  +L    K  +R  +  L         +LTG   G +  A 
Sbjct: 181  LVLARGQEGYRRLSREIAAAHLAAGEKGVLRYDIDALTAAAGGHWHILTGCRKGHLRTAL 240

Query: 160  FFN------SSQVAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPL 211
              +          AE  L    + F  DR+ V L  H    D  R + ++ LA    LP+
Sbjct: 241  ADDLAAGETGLPRAEAALRDLVERFGADRVSVELTHHGVPADDERNALLIALADRVGLPV 300

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
            +AT  + F   E       L A+     + +           +L++ +EM  +F+  P+A
Sbjct: 301  LATTGAHFAGPEQRRRAMALAAIRARRSLDEMAGWLAPAGGAHLRSGAEMARLFAACPDA 360

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
            + N V ++R C+F L++ AP LP F   +  D    E + LR   + G   R        
Sbjct: 361  VANAVALSRECAFDLRLIAPQLPPFAVPDGHD----ENSWLRELVLRGAARRYG----PP 412

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
              +   YR +L+ EL VIA + F GYFL+V D + + ++N I +  GRGS A S   +A+
Sbjct: 413  HANPPAYR-QLEHELEVIATLGFPGYFLVVHDIVSFCERNGI-LCQGRGSAANSAVCFAI 470

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             IT++DP+   LLFERFL+P+R   PD DID   DRR+E I++V  +YG E  AQ+    
Sbjct: 471  GITNVDPVANELLFERFLSPERDGPPDIDIDIESDRREEAIQHVYARYGREYAAQVANVI 530

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            + + K+A+RD  +AL     Q D   K +       V  +   D               +
Sbjct: 531  TYRGKSAVRDAAKALGFSPGQQDAWSKQVSRWTG--VGAETGTDIPE------------Q 576

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            +L ++  LEGL RH   H+ G+VI DRP++ + P+     +   V Q++       GL+K
Sbjct: 577  VLRLAADLEGLPRHMGIHSGGMVICDRPIADVCPVEWARMAGRSVLQWDKDDCAAVGLVK 636

Query: 571  FDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
            FD LGL  L+ L   +D + +   V+V L  +   +   Y +L+   ++G+FQ+ES    
Sbjct: 637  FDMLGLGMLSALHYMIDLVREHEGVEVRLHELDLKEPAVYEMLSRADSVGVFQVESRAQM 696

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
              L  ++P    D++  V+L RPGPI       Y  R+NG E +   HP ++  L  T G
Sbjct: 697  ATLPRLRPREFYDLVVEVALIRPGPIQGGSVHPYIRRRNGTEPVTYDHPALENSLGRTLG 756

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASK-NGISKTI 745
            V ++QEQ+MQ+A  ++G++ +EAD LRRAM  K+  E M + KER   G ++ +GI+  +
Sbjct: 757  VPLFQEQLMQMAVDVAGFTAAEADQLRRAMGSKRSPERMRRLKERLYRGMAELHGITGEV 816

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A  I+E L  FA++GF +SH+ ++A + + +AW K H+P  F A  +  +       +  
Sbjct: 817  ADRIYEKLYAFANFGFPESHSQSFAALVFYSAWFKLHHPAAFCAGLLRAQPMGFYSPQSL 876

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRI--YYSLAAIKGVGTTTARHIMEAS-ADKPF 862
              DAR+  + +  P VN    +  + +        LA ++ +G+  A  I+ A     P+
Sbjct: 877  VADARRHGVPVHGPDVNASLAEATLENGGREVRLGLAGVRHIGSELAERIVAARVEHGPY 936

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF----GYSRMQLLQSLDNIQKYAQWVEKN 918
             S+ D   RV+         E+L  AGA D      G  R    ++       A     +
Sbjct: 937  TSVLDLTGRVELT---VAQAEALATAGAFDSVTGPSGAERSGGRRAALWAAGAAARERAH 993

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                         G  +D   L   S          +    G     +P +  +  + ++
Sbjct: 994  LLPG--------TGPAADAPALPGMSA---LELAAADVWATGISPGSYPTEFLRARMDEL 1042

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            G+      +    G+ + +   V  +Q+  T  G  + ++   +         
Sbjct: 1043 GVIPAGRLLEVRDGSRVLVGGAVTHRQRPATAAG--VTFLNLEDETGMVNVVC 1093


>gi|299535454|ref|ZP_07048776.1| DNA polymerase III subunit alpha [Lysinibacillus fusiformis ZC1]
 gi|298729215|gb|EFI69768.1| DNA polymerase III subunit alpha [Lysinibacillus fusiformis ZC1]
          Length = 1027

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/1020 (34%), Positives = 545/1020 (53%), Gaps = 46/1020 (4%)

Query: 17   HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
            H+S  LL+  + L  ++  +   +  A AI +T  L+  L F +    A I  +IG  ++
Sbjct: 9    HTSADLLKSTIRLEQLIPFLQEQKTQACAIVNTK-LYGLLPFCKALQQANIHAVIGLSVN 67

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            +   D                 +VL   T EGYQ L+++ S + +    +Q   +   WL
Sbjct: 68   VQWHDKK-------------LPLVLYARTQEGYQHLLKISSAISI----RQDDVLPWKWL 110

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR 196
            +      + +L+      +D           +  +    +LF    Y+ + R  G    +
Sbjct: 111  EGYSAGCIALLSSDDLTDVDDW---------QAMVSALFQLFNHHFYMGIARPGGIKAEQ 161

Query: 197  ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKN 256
            E   V     H + LVA+ +  FL  ED+ A++V  A+     +    +      ++   
Sbjct: 162  EDDFVSWCEGHAIALVASQSCYFLRPEDHFAYEVARAIDTGEKLGNTMQTADVQGYFAPT 221

Query: 257  RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
              E  + F+D P+ L+ + ++   C   L      +P+F   E +      E+ L  +A 
Sbjct: 222  VFEWQNWFADRPDWLDASTKMLACCKADLPKMPVQMPKFPVPEGE----TAESLLVKEAF 277

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             GLE R  Q AI        Y +RL +EL +I  M F+ YFLIVADF+++AK+N I  GP
Sbjct: 278  TGLEERFKQLAI-----PVAYHERLQYELEIICSMGFADYFLIVADFMRYAKENRILTGP 332

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGS AGS+ AY+L+IT +DPL + LLFERFLNP+R+++PD DIDF   +R +VI+YV  
Sbjct: 333  GRGSSAGSLVAYSLSITQVDPLAYGLLFERFLNPERITLPDIDIDFVDSKRHQVIQYVAQ 392

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            KYG   VAQIITFG+L AKA  RDV R        ++++ K+IPN P   +  +A+A+  
Sbjct: 393  KYGKANVAQIITFGTLSAKAVARDVARVFGFDAEMLEKISKMIPNKPGITLQ-RAVAESQ 451

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
             F+     +    R  E++ KLEGL R++S HAAGIVI   PL   VP+  +    +  T
Sbjct: 452  DFQGWLAENDKHLRWYEVALKLEGLPRNSSIHAAGIVIAPSPLVNTVPIE-EGHDGIYST 510

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            Q+ M  IE  GL+K DFLGL+ LT+L++         G  ++   IP  D +T+ LL   
Sbjct: 511  QWPMGDIEACGLVKMDFLGLRNLTILEQIRWSIYKAGGPWIEFERIPMHDDKTFQLLQRG 570

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
             TLGIFQLES GM+QAL  + P    DI+A+ +LYRPGP+D I VY  RK G+E +   H
Sbjct: 571  DTLGIFQLESDGMKQALRDIGPTSFLDIVAVNALYRPGPMDFIPVYAKRKAGREMVTMPH 630

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            P+++P+L+ET GVI+YQEQ+++IA +L+G+++ +AD+LRRA+ KK ++ +++Q+  F+ G
Sbjct: 631  PVLEPILQETFGVIVYQEQIIKIASVLAGFTMGQADLLRRAVSKKNRQVLEEQRTAFVQG 690

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A + G  + +A  ++EL+ +FADYGF KSHA AY+VISYQ A++K H+P  F AA ++  
Sbjct: 691  ALRQGFEQHLAEEVYELIVRFADYGFPKSHAVAYSVISYQMAYLKAHFPQSFYAALLSNA 750

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
              NVEKI++F  +A+   I   PPS+      F V +  I YSL+ IKGV  T    I  
Sbjct: 751  TGNVEKIQQFVHEAKDKGIPFYPPSLKNSTKYFTVENEGIRYSLSGIKGVPHTFIEKIHG 810

Query: 856  ASADKP--FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
                 P   ++L D    + ++    +VLESL++AGALD     R  L+ +++   K A+
Sbjct: 811  LRQTNPEVLNNLFDLAVALSAQHFKPKVLESLIYAGALDYLERDRAVLIMTVEAALKQAE 870

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
             +   R  +  ++ +    +F  K    +    +   +  +E+  LGFY S HP+   + 
Sbjct: 871  LL---RPTEDIDLASAMAFSFG-KPKYMQAGAMSQKEKLMHEKESLGFYISTHPVAQERL 926

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +   +      E      G +I++  ++   ++ +T+KG ++ +V   +        FFP
Sbjct: 927  LWTDIN-STCRELRQKRDGTSIKMIGLIEEVKKIRTKKGEQMAFVQLQDEFGTVSITFFP 985


>gi|325168586|ref|YP_004280376.1| DNA polymerase III alpha chain [Agrobacterium sp. H13-3]
 gi|325064309|gb|ADY67998.1| DNA polymerase III, alpha chain [Agrobacterium sp. H13-3]
          Length = 1085

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1047 (26%), Positives = 465/1047 (44%), Gaps = 88/1047 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  LQV + +S L GA S   + D        AI + D N+L   +   + + A G++ 
Sbjct: 2    SYAELQVTTHFSFLRGASSAQELFDTAKLLGISAIGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC                +       S+++       Y RL  L++    L + +   
Sbjct: 62   VVGC----------------RLDLADGMSLLVYPMDRPAYSRLTRLIT----LGKSRGGK 101

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
              C+     +  + ++  + G  G I      +++  A+  L     +FGDR YV+L  R
Sbjct: 102  NNCI-----LHWDDVMAYSEGMIG-ILVPDLPDATCAAQ--LRKLAHVFGDRAYVSLCLR 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
             R  D+ R  ++  +A    +  V TN+ LF      +  D++  + H+T +        
Sbjct: 154  RRPNDQMRLHEISNMAARFRVKTVVTNDVLFHEPGRRQLQDIVTCIRHNTTIDDVGFERE 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK   EM  +F   PEAL  ++EI RRC F L+      P    +E     K+ 
Sbjct: 214  RHADRYLKPPEEMARLFPRYPEALARSMEIVRRCKFSLEELTYQYP----EEAIVPGKDA 269

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L +        R  +G         D  + +  EL++I  MK++ YFL V   +++A
Sbjct: 270  QASLEHYVWECAPDRYPEGL------PPDVLKTVRHELDLIRTMKYAPYFLTVFSIVRFA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +RR
Sbjct: 324  RSQGI-LCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+++   Y H++ A   T    +AK A+RDVG+AL +P   +  L   +        
Sbjct: 383  EEVIQWIYKTYRHDKAALCATVTRYRAKGAIRDVGKALGLPEDVIKALSSGMW------- 435

Query: 488  SLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            S      D   RE  L +P   RL   L+++Q+L G  RH   H  G V+    L  LVP
Sbjct: 436  SWSEEVPDRNIRELNL-NPDDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVP 494

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +      D  + +++   +E    +K D L L  LT + K+   + +     +DLS I  
Sbjct: 495  IEPATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMAKAFHLIREDKGENLDLSTIQQ 554

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y
Sbjct: 555  EDAATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPY 614

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R+ GKE +    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M   K
Sbjct: 615  LRRREGKEPVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFK 674

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                + + KE+ +SG  KNG S   A   F  L  F  YGF +SHAA++A+I+Y + ++K
Sbjct: 675  FTGGVSRFKEKLVSGMVKNGYSAEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIK 734

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK------VGDNR 834
             HYP  F AA +  +        +   DA +  +++ P  VN    D        +  + 
Sbjct: 735  CHYPDVFCAALLNSQPMGFYAPAQIVGDAIKHGVEVRPVCVNRSRWDCTLEKIGSIDRHA 794

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +      +KG+    A  I+ A  + PF S++D   R           E+LV     D F
Sbjct: 795  VRLGFRQVKGLAVADAARIVTARMNSPFLSVDDMWRRSSVP------TEALVQLAEADAF 848

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--------KGTFSDKITLEKFSVE 946
                   L SL   ++ A W  K   ++   +FA                ++ L + +  
Sbjct: 849  -------LPSLKLERRDALWAIKALRDEPLPLFAAATEREMAAIAEQQEPEVALRQMTDG 901

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            ++ +    +    G     HP+   +  L    I    E++    G  +  A +V+ +Q+
Sbjct: 902  HNVI---EDYSHTGLTLRQHPVAFLRRDLSARNIIPCAEAMNARDGRWVYTAGLVLVRQK 958

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + KG  + ++T  +         +P
Sbjct: 959  PGSAKG--VMFITIEDETGPANIVVWP 983


>gi|314936197|ref|ZP_07843544.1| DNA polymerase III, alpha subunit [Staphylococcus hominis subsp.
            hominis C80]
 gi|313654816|gb|EFS18561.1| DNA polymerase III, alpha subunit [Staphylococcus hominis subsp.
            hominis C80]
          Length = 1067

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1025 (33%), Positives = 541/1025 (52%), Gaps = 79/1025 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +HS+Y LL  +L +N+++ K  A+   A+AITDTN L+   +F       GI+PI
Sbjct: 2    FVHLNIHSTYDLLYSSLKINDVVSKAKANGYQALAITDTNVLYGFPKFYDACVNEGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  + +  + +   T             +L     EG   L +L S + +    KQ   
Sbjct: 62   FGMTVMVSDEISTIET-------------ILFAKNNEGLHALYQLSSAINM----KQKTT 104

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L WLQ+      I+             F +++   +  + T K    + +++N     
Sbjct: 105  IPLKWLQKYSYHLAIV-------------FKDANASHQSLIQTLKN--NESVFIN----- 144

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                       QL ++ +  +V  NN+ +L+ ED +    L A+ ++T +   +   +  
Sbjct: 145  --------HTSQLDFSDD-KIVFLNNARYLNPEDADTILALKAIKNNTKLDLVN--DIKD 193

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             H     SE +       + + NT  +A  C+  +Q H  +LP F        Q+  ++ 
Sbjct: 194  AHEYFPTSENIKELQLSEKIIANTKALADECNAEIQYHQNLLPNFKTPN----QQSAKSY 249

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L  K    L+         K    Q Y  RL  E ++I  M F  YFLIV+D I +AK +
Sbjct: 250  LLEKLKYNLKE-------FKLDKDQRYIDRLHHEYSIITNMGFEDYFLIVSDLIHFAKTH 302

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F LLFERFLNP+R++MPD DIDF   RR++V
Sbjct: 303  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFDLLFERFLNPERVTMPDIDIDFEDTRREKV 362

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L+
Sbjct: 363  IQYVQEKYGQYHVSGIVTFGHLLARAVARDVGRIIGFDEKTLNEISNLIPHQLG--ITLE 420

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                + +F+         ++  EIS+KLEGL RH STHAAGI+I D+PL    P+     
Sbjct: 421  EAYQNEKFKAFVHKSYRHEKWFEISKKLEGLPRHTSTHAAGIIINDKPLYHFAPLTMGDT 480

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  +PF+D + +
Sbjct: 481  G--ILTQWTMTEAERLGLLKIDFLGLRNLSIIHQIITQVKKDLNIDIDIERLPFNDQKVF 538

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R+ L  +QP+  EDI+A+ SLYRPGP+  I  Y +R++ + 
Sbjct: 539  KLLSLGNTTGIFQLESEGVRKVLMELQPEHFEDIVAVTSLYRPGPMQEIPTYISRRHRQS 598

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +I  +HP ++P+LK+T GVIIYQEQ+MQIA   + +S  +AD+LRRAM KK +  ++ ++
Sbjct: 599  EIKYLHPDLEPILKKTYGVIIYQEQIMQIASQFANFSYGQADILRRAMSKKNRAILESER 658

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA  N    +I+  IFEL+ KFADYGF ++HA +Y+ I+Y  A++K HYP  F A
Sbjct: 659  QHFIEGAVSNNYDASISERIFELILKFADYGFPRAHAVSYSKIAYIMAYLKVHYPNYFYA 718

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + N  K     ++A+  ++ I+PP +N     +K  +  IY SL AIKGVG  +
Sbjct: 719  NILSNVIGNETKTAIIIEEAKTQSLNILPPDINKSHWFYKATEKNIYLSLGAIKGVGYQS 778

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  +    DF  R+  +   R++LE+L+  GA D FG +R  LL ++D +
Sbjct: 779  VKSIVDERIENGLYKDFFDFTRRIPKRIKTRKLLEALICVGAFDSFGKTRSTLLSTIDEV 838

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  VE++     E +F       + K + E     +  +    E+  LGFY S HP+
Sbjct: 839  IDQVSNVEQD-----EFLF----NMLTPKQSYEDKEEFSDQIISAYEKEYLGFYISNHPV 889

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            +    I + +GI   + S+         +   V   +Q +T+ G  + ++   +     +
Sbjct: 890  EKLFYIKQYLGIFTIKNSLDYQP-----ILVQVNQFKQIRTKTGQHMAFLVLDDGRTTID 944

Query: 1029 ANFFP 1033
               FP
Sbjct: 945  GVLFP 949


>gi|162145940|ref|YP_001600398.1| putative DNA polymerase III alpha subunit [Gluconacetobacter
            diazotrophicus PAl 5]
 gi|161784514|emb|CAP54047.1| putative DNA polymerase III alpha subunit [Gluconacetobacter
            diazotrophicus PAl 5]
          Length = 1054

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1038 (27%), Positives = 460/1038 (44%), Gaps = 76/1038 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQV S +S L GA S   + ++  A    A+ I D N+L   ++    A A G++ 
Sbjct: 3    RYAELQVTSYFSFLRGASSPLELFEQARALGIAALGIADRNSLAGMVQAHVAARATGVRL 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC                +      P +++  +    Y RL  L+S       GK   
Sbjct: 63   VVGC----------------RLDLADFPPVLVYPTDRAAYGRLCRLLSLGKSR-AGKARC 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             +    L   G   L +L    +            +     L   K  F DR Y+ L   
Sbjct: 106  HLLWEDLVAWGDGLLAILVPDVA-----------DEACALHLRKLKDAFHDRAYMALTLL 154

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  D+ R   +  LA+   +P V TN+ LF + +     DV+  + H+T + +    R 
Sbjct: 155  RRPNDQMRLYALANLAHRARVPTVVTNDVLFHTHDRRILQDVVTCIRHNTTIDEAGFARE 214

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK   EM  +F   PEA++ T+ I  RC F L   A   P     E     +  
Sbjct: 215  RHADRYLKPPQEMARLFGRYPEAVDRTIAIMERCRFSLDDLAYQYP----DEVSVPGQTP 270

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L      G      +G         +    L+ EL +I RM ++ YFL V   +++A
Sbjct: 271  QQALEVLTWEGARRFYPEGI------PDEVTASLNHELALIGRMNYAPYFLTVNSIVRYA 324

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +I +  GRGS A S   Y L IT IDP R SLLFERF++ +R   PD D+DF   RR
Sbjct: 325  RSQDI-LCQGRGSAANSAVCYVLGITAIDPARNSLLFERFVSEERGEPPDIDVDFEHARR 383

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            ++VI++V   YG ER A        +AK ALRDVG+ + +P   +  L   I     +  
Sbjct: 384  EQVIQWVYGHYGRERAALTAVVIRYRAKGALRDVGKVMGLPEDLIGTLSGQIWGWSKN-- 441

Query: 488  SLQAIADDSRFREAR--LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                 AD  +FR+    L+D  +   L+++  L G+ RH S H  G V+    L +LVP+
Sbjct: 442  -----ADPEQFRDTGIDLSDRRIRLTLDLACCLIGVPRHLSQHPGGFVLTHDRLDELVPI 496

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                  D  + +++   I+    +K D L L  LT ++K LD LA+    +  L+ IP +
Sbjct: 497  EPAAMDDRQIIEWDKDDIDVLKFMKVDILALGMLTCMKKGLDLLAEHKGQRFALATIPAE 556

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y 
Sbjct: 557  DPLTYAMIRRADTIGVFQIESRAQMSMLPRLKPRVFYDLVIEVAIVRPGPIQGDMVHPYL 616

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+ G E      P ++ +LK+T G+ ++QEQ MQ+A + + ++ SEAD LRRAM   K 
Sbjct: 617  RRREGIEPEEYPTPELEKVLKKTLGIPLFQEQAMQVAMVCADFTASEADQLRRAMATFKN 676

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               + + + + + G   NG ++  A  I++ L  F  YGF +SHAA++A+++Y ++W+K 
Sbjct: 677  TGTIGRFQTKLVEGMKANGYTEEFAERIYQQLEGFGSYGFPESHAASFAILAYSSSWLKC 736

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------GDNR 834
            H+P  FLAA +  +        +  +DAR+  + I P  VN    D  +       G   
Sbjct: 737  HHPDVFLAALLNSQPMGFYAPAQLVRDAREHGVGIRPICVNASRWDSTLEGPETACGRFA 796

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +   ++ +KG+    A  I+ A   +PF S++D   R     +    L  L  A A    
Sbjct: 797  VRLGMSLVKGLANADAARIVAARGARPFASVDDLWRRA---GVPVAALTHLAEADAFR-- 851

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
                     +L   ++ A W  K   ++   +FA        +          +      
Sbjct: 852  --------PALGLARREALWAIKALRDEPLPLFAAAAVAREAEEPDVLLQPMRAGAEVTR 903

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +   +G     HP+   +  LR+       E+     G  +  A +V+ +Q+  + +G  
Sbjct: 904  DYNRIGLTLRDHPVAFLRDDLRQRKFFSCREAHEARDGKRLDAAGLVLVRQRPGSAEG-- 961

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + ++T  + +       +
Sbjct: 962  VVFLTLEDESGVLNVIIW 979


>gi|256422395|ref|YP_003123048.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
 gi|256037303|gb|ACU60847.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
          Length = 1055

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/1040 (25%), Positives = 464/1040 (44%), Gaps = 81/1040 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V LQV S++S L GA   + ++++ A      IAITD N L   +     A A GI+ I
Sbjct: 3    YVELQVTSNFSFLRGASHPDELVEQAAEYGYKEIAITDRNTLAGIVRAHAAAKAKGIRII 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
              C                +      PS++   +    Y RL  L++   L    +    
Sbjct: 63   PAC----------------RLDLQDGPSLLAYPTDQAAYSRLSSLLTTGNL----RAEKG 102

Query: 131  ICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEK-RLLTFKKLFGDRLYVNLQ 187
             CL + +++     G+I +        ++       + A K  L  +K   G +LY+++ 
Sbjct: 103  DCLLYKKDVYAYAAGMIFIVVPP----EQLNTKFDFETAFKNDLKEYKDKLGSQLYLSVT 158

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
            R + G D  R  ++ QL+  + +PL ATN+  +   E  +  D+L  V     +     R
Sbjct: 159  RSYLGDDHKRLYRLAQLSALYHIPLAATNDVHYHHPERRQLQDILTCVREKCTIYNAGFR 218

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +LK  +EM  +F   PE + N   IA  C F L+    + P  +  E     +
Sbjct: 219  LHQNAERHLKTPAEMQRLFRQYPETISNARHIADACRFTLESLKYVYPEELTTEG----R 274

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + EL   +  G + R       K   A      + +EL  I  M ++ YFL V D ++
Sbjct: 275  TPQEELTYLSWEGAKERFGDDIPEKISSA------ISYELTFIEEMNYAAYFLTVHDIVR 328

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S   Y L IT ++P +  LLFERF++  R   PD D+DF  +
Sbjct: 329  FARSQHI-LCQGRGSAANSTVCYVLGITSVNPTKIDLLFERFISSARNEPPDIDVDFEHE 387

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV++YV NKYG +R A + T      K A+RDVG+A+ +    ++R+   I      
Sbjct: 388  RREEVMQYVFNKYGRDRAAIVATVTQQHQKGAIRDVGKAMGLSVDTINRMSTSIWR---- 443

Query: 486  PVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                    D+ R  E  L   DP + ++L +++++ G  R    H  G VI    L +L 
Sbjct: 444  --YTDEWFDEGRLLEHGLNPEDPHLKKVLALTKQMMGFPRQLGQHTGGFVITQGKLHELC 501

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+      +    ++N   I+  G +K D L L  LT ++K+ D   Q       L+ IP
Sbjct: 502  PILNARMENRTCIEWNKDDIDTLGFMKIDVLALGMLTCIRKAFDLAKQHYGKDYTLANIP 561

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             DD   Y +++   T+G+FQ+ES   +  L  ++P    D++  V++ RPGPI  D +  
Sbjct: 562  EDDPAVYEMISHADTIGVFQIESRAQQSMLPRLRPQRFYDLVIEVAIVRPGPIQGDMVHP 621

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+NG+E      P ++ +LK+T GV ++QEQ M IA   + ++ +EAD LRR+M   
Sbjct: 622  YLRRRNGQEAPDYP-PQLEDILKKTLGVPLFQEQAMNIAIKAASFTPTEADELRRSMATF 680

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            ++   ++K +++ I G + NG     A  IF+ L  F  YGF +SHAA++A++ Y ++++
Sbjct: 681  RLNGVIEKFEKKLIDGMTANGYELDFAQRIFKQLKGFGSYGFPESHAASFALLVYVSSYL 740

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNR 834
            K +YP  F  A +        +  +   DAR  ++++ P  +N    D  +       + 
Sbjct: 741  KCYYPDVFACALLNSMPMGFYQPAQIVSDARAHHVEVRPVDINHSSWDNTLEEKETIPHA 800

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +      +KG+       ++ A       S+     R     +++  LE L  A A    
Sbjct: 801  LRLGFRQVKGLNQEEMDVLLSARKKG-ITSI--LALR--EAGVSQTALEKLADADAFRSI 855

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KGTFSDKITLEKFSVENSSVRF 952
            G  R + L  + ++             +   +F  +  + T    + L + S     V  
Sbjct: 856  GLDRRRALWEISSLHD-----------RPIGLFTGQASESTVEQPVDLPEMSAPEHVV-- 902

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +   +      HP+   +  L  + +   ++      G  +++A +++ +Q+  T  G
Sbjct: 903  -QDYNAMALSLKAHPVSFVREKLSLLHVTSVKDLATIPDGMPVKVAGLILVRQRPGTASG 961

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
              + ++T  +         F
Sbjct: 962  --VCFITIEDETGCANLVVF 979


>gi|118616689|ref|YP_905021.1| error-prone DNA polymerase [Mycobacterium ulcerans Agy99]
 gi|118568799|gb|ABL03550.1| DNA polymerase III, alpha chain, DnaE2 [Mycobacterium ulcerans Agy99]
          Length = 1088

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1041 (26%), Positives = 484/1041 (46%), Gaps = 59/1041 (5%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
               ++ S ++  L  HS+YS L+GA +   ++++ A     A+A+TD N L+ A+ F++ 
Sbjct: 43   ANRVDSSIAYAELHAHSAYSFLDGASTPEELVEEAARLDLRALALTDHNGLYGAVRFAEA 102

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   G++ + G +L +  +         + P P  P +++L    EGY+RL   ++  +L
Sbjct: 103  ASGLGVRTVFGAELSLGPEART------EQPDPPGPHLLVLARGPEGYRRLSRQLAAAHL 156

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180
                K   R     L E       +LTG   G + +A        AE+ L      F   
Sbjct: 157  AGGEKGKPRYDFDSLTEAAGGHWHILTGCRKGHVRQALRQGGPDAAERVLADLVDRFTAG 216

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HST 238
            R+ V L  H    D    + +  LA    + +VAT  + F           + A+    +
Sbjct: 217  RVSVELTHHGHPLDDENNAMLAGLAPRFGVGVVATTGAHFAHPARSRLAMAMGAIRARQS 276

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            + S           +L++ +EM  +F+  P+ +    E+  +C+F L + AP LP F   
Sbjct: 277  LDSAAGWLAPLGGSHLRSGAEMARLFAQRPDVVTAAAELGEQCAFGLALIAPRLPPFDVP 336

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +       E++ LR+  ++G   R   G+  +   A+    +++ EL VIA++ F GYFL
Sbjct: 337  DG----HTEDSWLRSLVMSGARERY--GSTERSPRARKAYAQIEHELKVIAQLSFPGYFL 390

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D  Q+ ++N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P+R   PD 
Sbjct: 391  VVHDITQFCRRNDI-LCQGRGSAANSAVCYALGVTAVDPIANELLFERFLSPERDGPPDI 449

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DID   D+R++VI+YV NKYG +  AQ+    + + ++A+RD+ RAL     Q D   K 
Sbjct: 450  DIDIESDQREKVIQYVYNKYGRDYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQ 509

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            I +  A    ++ I +               ++++++ ++  L RH   H+ G+VI DRP
Sbjct: 510  IGHWNATLDDVEGIPE---------------QVIDLAAQIRNLPRHMGIHSGGMVICDRP 554

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
            ++ + P+     +D  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VD
Sbjct: 555  IADVCPVEWARMADRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYARDLVAEHKGIEVD 614

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI  
Sbjct: 615  LARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQG 674

Query: 658  I--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
                 Y  R++G + +V  HP ++  L++T GV ++QEQ+MQ+A   +G+S +EAD LRR
Sbjct: 675  GSVHPYIRRRSGIDPVVYEHPSMESALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRR 734

Query: 716  AM-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            A+  K+  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + 
Sbjct: 735  AIGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLV 794

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            + ++W K H+P  F AA +  +       +    DAR+  + +  P VN       + + 
Sbjct: 795  FYSSWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVLVHGPDVNASLAHATLENA 854

Query: 834  RI--YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             +     L A++ +G   A  ++     + PF SL +  SRV         L +    GA
Sbjct: 855  GMQVRLGLGAVRHIGDDLAESLVAERNDNGPFASLLNLTSRVQLSVPQTEALATT---GA 911

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            L CFG SR +                               G+ S   TL   S      
Sbjct: 912  LGCFGMSRRE------------ALWAAGAAATQRPDRLPGVGSSSHIPTLPGMSE---LE 956

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
               ++    G     +P    +  L  +G+      ++   G  + +A  V  +Q+  T 
Sbjct: 957  LAASDVWATGISPDSYPTQFLRADLDALGVLAAAALLSVPDGERVLIAGAVTHRQRPATA 1016

Query: 1011 KGSRIGWVTFSEPAKEYEANF 1031
            +G  + ++   +         
Sbjct: 1017 QG--VTFINLEDETGMVNVLC 1035


>gi|162148659|ref|YP_001603120.1| putative DNA polymerase III alpha subunit [Gluconacetobacter
            diazotrophicus PAl 5]
 gi|161787236|emb|CAP56829.1| putative DNA polymerase III alpha subunit [Gluconacetobacter
            diazotrophicus PAl 5]
          Length = 1055

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/1041 (27%), Positives = 467/1041 (44%), Gaps = 74/1041 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P +  LQV S +S L G  S   +  +  A    A+ ITD N+L   ++    A A+G
Sbjct: 4    SAPRYAELQVTSYFSFLRGVSSPGELFGQAKALGISALGITDRNSLAGMVQAHLAARASG 63

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ I+GC                +      P +++  +    Y  L  L++       GK
Sbjct: 64   VRLIVGC----------------RLDLEDAPPVLVYPTDRAAYGNLCRLLTLGKAR-AGK 106

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R+    L   G   L +L    +            +     L   +  FGDR Y+ L
Sbjct: 107  GKCRLLWRDLVAWGEGLLAVLVSDVA-----------DEECAAHLRRLRDAFGDRAYMAL 155

Query: 187  Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              R R  D+ R  ++V LA+   +  V TN+ LF + +     DV+  V H+T +     
Sbjct: 156  TLRRRPNDQIRLYELVNLAHAQRVKTVVTNDVLFHTHDRRILQDVVTCVRHNTTIEHAGF 215

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R    D YLK  +EM  +F+  PEA++ T+EI  RC F L   A   P     E +   
Sbjct: 216  ARERHADRYLKPPAEMARLFARYPEAIDRTMEIVARCRFSLDDLAYQYP----DEIEIPG 271

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +  +  L                   G    D    L  EL +I RM+++ YFL V   +
Sbjct: 272  QTPQQALEALTWQAARETYG------GIIPPDVEMVLRHELALIGRMEYAPYFLTVHSIV 325

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            + AK+ +I +  GRGS A S   + L IT IDP R +LLFERF++ +R   PD D+DF  
Sbjct: 326  REAKRRDI-LCQGRGSAANSAVCFVLGITAIDPSRTTLLFERFISEERGEPPDIDVDFEH 384

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+E+I++V + YG +R A        +AK ALRDVG+ + +P   +  L + I     
Sbjct: 385  ARREEIIQWVYDHYGRDRAALTAVVIRYRAKGALRDVGKVMGLPEDVIALLSRQIWGWSH 444

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            H    +            L D  +   L++++ L G+ RH S H  G V+    L +LVP
Sbjct: 445  HVDPEKFAGT-----GIDLTDRRIRLTLDLARCLIGVPRHLSQHPGGFVLTRDRLDELVP 499

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPF 603
            +      D  + +++   I+    +K D L L  LT ++K LD L A +G    L  +P 
Sbjct: 500  IEPAAMEDRQIIEWDKDDIDALKFMKVDILALGMLTCMKKGLDLLAAHKGQHFTLQTVPA 559

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y
Sbjct: 560  EDPRTYAMIRKADTIGVFQIESRAQMSMLPRLKPRTYYDLVIEVAIVRPGPIQGDMVHPY 619

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R+ G E+     P ++ +LK T GV ++QEQVMQ+A + + ++ +EAD LRRAM   K
Sbjct: 620  LRRREGLEEPDYPTPELEEVLKRTLGVPLFQEQVMQVAMVCADFTAAEADGLRRAMATFK 679

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                +   + R + G ++ G  +  A  I++ L  F  YGF +SHAA++A+++Y ++W+K
Sbjct: 680  NTGTVSHFQTRLLEGMTRKGYPEEFAQRIYQQLEGFGSYGFPESHAASFAILAYTSSWLK 739

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------GDN 833
             H+P  FLAA +  +        +  +DAR+  +++ P  +N    D  +       G  
Sbjct: 740  CHHPDVFLAALLNSQPMGFYAPAQLVRDAREHGVEVRPVCINASRWDSTLEGEDDDRGCF 799

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD- 892
             +   ++ +KG+    A  +  A   +PF S++D   R     + +  L  L  A A   
Sbjct: 800  AVRVGMSLVKGLANAHAAALAAARLRRPFASIDDLWRRA---GVPQEALVRLAEADAFRP 856

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
             FG +R + L ++  +             +   +FA    +   +      +        
Sbjct: 857  AFGLARREALWAIKGLHD-----------EPLPLFAAAAQSRETEEPAMALAPMTDGAEV 905

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +   LG    GHP+   +  LR+  I     ++A   G  +  A +V+ +Q+  +  G
Sbjct: 906  VGDYNHLGLSLRGHPVSFLREDLRQRRIVPCGTAMALRDGKRVEAAGLVLVRQRPGS--G 963

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + ++T  +         +P
Sbjct: 964  EGVCFITLEDETGIANLVIWP 984


>gi|228475228|ref|ZP_04059954.1| DNA polymerase III subunit alpha [Staphylococcus hominis SK119]
 gi|228270839|gb|EEK12241.1| DNA polymerase III subunit alpha [Staphylococcus hominis SK119]
          Length = 1067

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1025 (33%), Positives = 540/1025 (52%), Gaps = 79/1025 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +HS+Y LL  +L +N+++ K  A+   A+AITDTN L+   +F       GI+PI
Sbjct: 2    FVHLNIHSTYDLLYSSLKINDVVSKAKANGYQALAITDTNVLYGFPKFYDACVNEGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  + +  + +   T             +L     EG   L +L S + +    KQ   
Sbjct: 62   FGMTVMVSDEISTIET-------------ILFAKNNEGLHALYQLSSAINM----KQKTT 104

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L WLQ+      I+             F +++   +  + T K    + +++N     
Sbjct: 105  IPLKWLQKYSYHLAIV-------------FKDANASHQSLIQTLKN--NESVFIN----- 144

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                       QL ++ +  +V  NN+ +L+ ED +    L A+ ++T +   +   +  
Sbjct: 145  --------HTSQLDFSDD-KIVFLNNARYLNPEDADTILALKAIKNNTKLDLVN--DIKD 193

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             H     SE +       + + NT  +A  C+  +Q H  +LP F        Q+  ++ 
Sbjct: 194  AHEYFPTSENIKELQLSEKIIANTKALADECNAEIQYHQNLLPNFKTPN----QQSAKSY 249

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L  K    L+         K    Q Y  RL  E ++I  M F  YFLIV+D I +AK +
Sbjct: 250  LLEKLKYNLKE-------FKLDKNQRYIDRLHHEYSIITNMGFEDYFLIVSDLIHFAKTH 302

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F LLFERFLNP+R++MPD DIDF   RR++V
Sbjct: 303  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFDLLFERFLNPERVTMPDIDIDFEDTRREKV 362

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L+
Sbjct: 363  IQYVQEKYGQYHVSGIVTFGHLLARAVARDVGRIIGFDEKTLNEISNLIPHQLG--ITLE 420

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                + +F+         ++  EIS+KLEGL RH STHAAGI+I D+PL    P+     
Sbjct: 421  EAYQNEKFKAFVHKSYRHEKWFEISKKLEGLPRHTSTHAAGIIINDKPLYHFAPLTMGDT 480

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  +PF+D + +
Sbjct: 481  G--ILTQWTMTEAERLGLLKIDFLGLRNLSIIHQIITQVKKDLNIDIDIERLPFNDQKVF 538

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R+ L  +QP+  EDI+A+ SLYRPGP+  I  Y +R++ + 
Sbjct: 539  KLLSLGNTTGIFQLESEGVRKVLMELQPEHFEDIVAVTSLYRPGPMQEIPTYISRRHRQS 598

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I  +HP ++P+LK+T GVIIYQEQ+MQIA   + +S  +AD+LRRAM KK +  ++ ++
Sbjct: 599  DIKYLHPDLEPILKKTYGVIIYQEQIMQIASQFANFSYGQADILRRAMSKKNRAILESER 658

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA  N    +I+  IFEL+ KFADYGF ++HA +Y+ I+Y  A++K HYP  F A
Sbjct: 659  QHFIEGAVSNNYDASISERIFELILKFADYGFPRAHAVSYSKIAYIMAYLKVHYPNYFYA 718

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + N  K     ++A+  ++ I+PP +N     +K  +  IY SL AIKGVG  +
Sbjct: 719  NILSNVIGNETKTAIIIEEAKTQSLNILPPDINKSHWFYKATEKNIYLSLGAIKGVGYQS 778

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  +    DF  R+  +   R++LE+L+  GA D FG +R  LL ++D +
Sbjct: 779  VKSIVDERIENGLYKDFFDFTRRIPKRIKTRKLLEALICVGAFDSFGKTRSTLLSTIDEV 838

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  VE++     E +F       + K + E     +  +    E+  LGFY S HP+
Sbjct: 839  IDQVSNVEQD-----EFLF----NMLTPKQSYEDKEEFSDQIISAYEKEYLGFYISNHPV 889

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            +    I + +GI   + S+         +   V   +Q +T+ G  + ++   +     +
Sbjct: 890  EKLFYIKQYLGIFTIKNSLDYQP-----ILVQVNQFKQIRTKTGQHMAFLVLDDGRTTID 944

Query: 1029 ANFFP 1033
               FP
Sbjct: 945  GVLFP 949


>gi|330469312|ref|YP_004407055.1| error-prone DNA polymerase [Verrucosispora maris AB-18-032]
 gi|328812283|gb|AEB46455.1| error-prone DNA polymerase [Verrucosispora maris AB-18-032]
          Length = 1088

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/1051 (27%), Positives = 466/1051 (44%), Gaps = 81/1051 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  H+++S L+GA     ++++       A+A+TD +  +  + F++ A A  +  
Sbjct: 37   PYAELHAHTNFSFLDGASHPEELVEEATRLGLTALAVTDHDGFYGVVRFAEAARALHLPT 96

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G +L + +        Q   P P    +++L    EGY RL   ++R +L    K   
Sbjct: 97   IFGAELTLGLPG-----PQNGVPDPHGKHLLVLAHGHEGYARLATTIARAHLRGGEKGRP 151

Query: 130  RI-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
                L  +     + +++LTG   G +  A        A + L     LF  + + V L 
Sbjct: 152  VYGELEEIAADLRDHVLVLTGCRKGHVPAALLTRGVDAAARELDRLTTLFGAETVAVELT 211

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
             H    D  R   + +LA    LP VAT N  + +         L AV     + + D  
Sbjct: 212  DHGHPIDGDRNDALAELATAAGLPTVATGNVHYATPGRRRLATTLAAVRARRSLDEMDGW 271

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                   +L++ +EM + F+  P A+    E     +F LQ+ AP LP +          
Sbjct: 272  LPAAGTAHLRSGAEMAARFAAYPGAVARAAEFGAELAFDLQLVAPQLPAYPVPPG----H 327

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E + LR    AG   R       +  H Q Y  +LD ELN+I  + F GYFL+V D ++
Sbjct: 328  TEMSWLRQLTEAGARERYG----PREAHPQAY-AQLDHELNMIEALGFPGYFLVVYDIVE 382

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            + ++ +I    GRGS A S   YAL IT++D +R  LLFERFL P+R   PD D+D   D
Sbjct: 383  FCRRADI-YCQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVDIESD 441

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI++V  +YG E  AQ+    S + ++A+RDV +A      Q D   K I      
Sbjct: 442  RREEVIQHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQIDRWGDV 501

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                 A  D     E         +++  + +++   RH   H+ G+VI DRP+ ++ P+
Sbjct: 502  -----AAVDVPEIPE---------QVIAYANEVQTFPRHLGIHSGGMVICDRPVIEVCPV 547

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                     V Q++       GL+KFD LGL  L+ L    D +    + +DL     DD
Sbjct: 548  EWGRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYGYDMIG---MSLDLGEETLDD 604

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
             E Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI       Y  
Sbjct: 605  PEVYDMLCRADSVGVFQVESRAQMATLPRLKPREFYDLVVEVALIRPGPIQGGSVHPYIR 664

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            RKNG+E +   HPL+   L++T GV ++QEQ+MQ+A  L+G+  +EAD LRRAM  K+  
Sbjct: 665  RKNGQEPVTYAHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAEADQLRRAMGAKRSV 724

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E M +  +R  +G ++ GI+  +A +++  L  FA YGF +SHA ++A + Y ++W+K +
Sbjct: 725  ERMARIADRLYAGMAQRGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASSWLKRY 784

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--------------- 827
            +P  FLAA ++ +       +    DAR+  +Q+  P VN   V                
Sbjct: 785  HPGPFLAALLSAQPMGFYSPQTLVDDARRHGVQVRRPDVNASGVKPVLESTAETRWGSQP 844

Query: 828  ------FKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRR 880
                  + +G   +   L+ ++ +G   A+ I+    A  P+  + D   RV        
Sbjct: 845  GEPPHAWGLGGPAVRLGLSGVRTLGEPVAQRIVAERSAHGPYRDMPDLARRVGLTA---A 901

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE+L  A A  CFG +R Q                    ++ + +     G  +   TL
Sbjct: 902  QLEALATADAFACFGLTRRQ----------ALWAAGAAAQDRPDRLPGTVTG--AAAPTL 949

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                  +   R   +    G     HP    +P L  MG    +       G  IR+  +
Sbjct: 950  PGMEAVD---RLVADVWATGLSPENHPARFIRPQLEAMGAVPIDRLGRVEPGRRIRVGGI 1006

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            V  +Q+  T  G  + ++   +         
Sbjct: 1007 VTHRQRPATAGG--VTFLNLEDETGMLNVTC 1035


>gi|307943857|ref|ZP_07659201.1| error-prone DNA polymerase [Roseibium sp. TrichSKD4]
 gi|307773487|gb|EFO32704.1| error-prone DNA polymerase [Roseibium sp. TrichSKD4]
          Length = 1135

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/1052 (25%), Positives = 450/1052 (42%), Gaps = 80/1052 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F  L   S++S L GA     +  + A     A+AI D N++   +     A  AG++ 
Sbjct: 20   GFAELCAASNFSFLHGASHPEELAMRAADLGLKALAICDRNSVAGVVRAHMAAKEAGLRF 79

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + GC+L                     P +++     +GY RL  L++      + K   
Sbjct: 80   VPGCRLGF---------------LDGTPDLLVWPKHRQGYGRLSRLLTIGNRRAE-KGCC 123

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L  +    +  L      P        S       L   K + G  L + +   
Sbjct: 124  HLLPDDLTHLDQGSVTALVLPPGLP--------SPDEMIADLQGLKAVLGSDLRLAVSLS 175

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
            +G  DR R    V+LA   ++ L+ATN+ L+   E     DVL  +     +    R   
Sbjct: 176  KGPADRRRLDLAVRLAQLSDVKLLATNDVLYHVLERRPLQDVLTCIRLHERLETAGRQLE 235

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YLK+  +M  +F    +AL  ++ I    SF L   A   P     +        
Sbjct: 236  ANAERYLKDAEDMARLFDGAEDALYESLRILEELSFSLDDLAYEYPEEPCGD----SASP 291

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + EL   A  G + R   G   K        + ++ EL ++A + ++ YFL V D +++A
Sbjct: 292  QAELERLAEEGAKRRYPNGVPDK------VTKAINHELKLVAELDYAPYFLTVYDIVRFA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A SV  + L IT++DP R  LLFERF++P+R   PD D+DF  +RR
Sbjct: 346  RSRGI-LCQGRGSAANSVVCFCLGITEVDPARADLLFERFISPERRESPDIDVDFEHERR 404

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG ER     T  + + ++ALR+VG+   +    +  L   I    +   
Sbjct: 405  EEVIQYIYEKYGRERSGLAATVITYRTRSALREVGKVFGLSEDAIGALSGTIWGHSSSEA 464

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            S   + +          DP + +++E+   L G  RH S H  G VI    L ++VP+  
Sbjct: 465  SEGQVVE----AGMDPKDPMLGQMMELVDTLIGFPRHLSQHVGGFVITKGRLDEVVPIQN 520

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDH 606
                D  V +++   ++  G++K D L L  L+ ++K+LD L++       ++ IP ++ 
Sbjct: 521  AAMEDRTVIEWDKDDLDALGILKIDILALGMLSAIRKALDMLSENYGCDYTVATIPPEEP 580

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNR 664
            E Y +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  R
Sbjct: 581  EVYDMLCRADSIGVFQVESRAQMTMLPRLKPQAFYDLVIEVAIVRPGPIQGDMVHPYLRR 640

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKE 723
            + G EK+      ++ +L +T GV ++QEQ M+IA + +G++  EAD LRRAM   +   
Sbjct: 641  RQGLEKVTYPSRELEEVLGKTMGVPLFQEQAMKIAIVAAGFTPGEADRLRRAMATFRRVG 700

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +   + + I G +KNG  +  A   F  +  F +YGF +SHAA++A++ Y ++W+K  Y
Sbjct: 701  TIGTFQTKMIEGMAKNGYDRDFAERCFRQIEGFGEYGFPESHAASFALLVYASSWIKARY 760

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----------- 832
            P  F AA +  +        +  +DAR+  +++    +N    D  +             
Sbjct: 761  PDVFCAALLNSQPMGFYAPAQLVRDAREHGVEVREVDINMSDWDAGLEPGNCAADRLHRK 820

Query: 833  -----------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                         +     +IKGV       ++    +  +DS+ D   R     L R V
Sbjct: 821  HADMRGTIQSNKAVRLGFRSIKGVRQDDMEILVAMRGEG-YDSVRDLWLRT---GLGRPV 876

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            +  L  A A    G  R   L +       AQ +E+ +      +F              
Sbjct: 877  IMRLAEADAFRSLGLDRRTALWA-------AQGLERGKVQDRLPLFDTADAGDLRPEPNA 929

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                         + + L      HP+   +P L++  +    E      G ++ +A +V
Sbjct: 930  DLPSMPPGAHVMADYQTLSLSLKAHPVAFARPALQRQRVVPCMELDRLRSGCHVTVAGLV 989

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +Q+  + KG  + +VT  +         +P
Sbjct: 990  LVRQRPGSAKG--VIFVTLEDEGGIANVIVWP 1019


>gi|257870428|ref|ZP_05650081.1| DNA polymerase III E [Enterococcus gallinarum EG2]
 gi|257804592|gb|EEV33414.1| DNA polymerase III E [Enterococcus gallinarum EG2]
          Length = 1102

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/1033 (30%), Positives = 517/1033 (50%), Gaps = 65/1033 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+YSLL+  + +   +          + + D N L+ ALEF Q+   AGI+P+
Sbjct: 2    YHQLTTLSAYSLLQSTIKIPRYIAAAKKAGYKVLGLADHNVLYGALEFYQQCQNAGIKPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG   D     +                + L      GY+ L+ L S   +         
Sbjct: 62   IGVLFDCTFGTSTMR-----------FPLYLFAKNLSGYRLLMRLSSEKMING------H 104

Query: 131  ICL-SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
            + L  +L      G++       G               + L  F   F  + L++ +Q+
Sbjct: 105  LDLSEYLTLPDLFGIL-----PQGQGFSPDQSEDLAQLSRALTDFVARFDQKSLFLGVQK 159

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ--KDRP 246
                         +    H L L A      L + +  A  V+  + + T +    K + 
Sbjct: 160  AAATPER------EWFQQHGLELCAYQPVAALEQAELFAVQVMEHIKNGTQIEDFRKAKE 213

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + +  +YL+  +E++  F +  EAL N   IA  C+  + +H  +LP F  +E ++    
Sbjct: 214  QSSETYYLEQPAELIQAFGENSEALVNNQRIAEECTLTIPLHQRLLPHFPLEEGENA--- 270

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR      L  R+ Q           YRQRLD+EL+VI  M F  YFLI+ D + +
Sbjct: 271  -ADFLRKLCFEKLSERITQ-------VTDIYRQRLDYELSVIHTMGFDDYFLIIWDVMDF 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A KN I  G GRGS AGS+ A+ L ITD+DP+ + LLFERFLNP+R +MPD D+D   +R
Sbjct: 323  AHKNEIVTGAGRGSAAGSLVAFVLAITDVDPIEYDLLFERFLNPERYTMPDIDLDIPDNR 382

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDE++ YV+ KYG E +AQI TFG++ AK  LRDV R   +  S+ +R  K IPN     
Sbjct: 383  RDEILHYVRQKYGQEYMAQIATFGTMAAKMVLRDVSRVFGLSQSEANRWSKAIPNALKMT 442

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            ++L A    ++ RE    +   + +  +++ LEGL RH STHAAG+VI D+ L  LVP+ 
Sbjct: 443  LAL-AYEQSNQLRELATFNERNETMFAVAKVLEGLPRHVSTHAAGVVISDKNLLDLVPLQ 501

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            +    ++ +TQF M  +E  GL+K DFLGL+ L+++  +L  + +     V    IP +D
Sbjct: 502  QGS-DEILLTQFTMNDVETVGLLKMDFLGLRNLSIIDNTLRGIKRVTNETVTQKAIPLND 560

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                 L     T GIFQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  RK
Sbjct: 561  PAVLRLFQQGDTAGIFQFESAGIRNVLRKLGPESIEDIAAVNALYRPGPMQNIDTFIRRK 620

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G+EK+V     + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +
Sbjct: 621  KGQEKVVYPDAALVPILQNTYGIIVYQEQIMQVASKMAGFSLGQADILRRAISKKKKDVL 680

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F+ GA  N  S   A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP 
Sbjct: 681  DEERRHFVEGAVANHFSAEKAEEVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPG 740

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKG 844
             F AA +    +N  K+K++  +A ++ + I+PPS+N     F +   + I +  +++KG
Sbjct: 741  PFFAALLHSVRNNPGKLKEYLNEATRYGVAILPPSINKSGYSFYLQSEKQIRFGFSSVKG 800

Query: 845  VGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKL---NRRVLESLVFAGALDCFGYSRMQ 900
            +     + I++    +  F SL+ F  R+  K         +  L+  GA D    +R Q
Sbjct: 801  IRRDLIQDILDERKENGTFSSLDQFLLRLHQKNNKWLKEDYIRPLLSIGAFDELVTNRKQ 860

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             L  L+   +   +     +    ++           +   + +  +   +   E+  LG
Sbjct: 861  ALIQLEGKIQNITY-----SGGSLDLLETMA------LKEAEVADYDLEQKLALEEEYLG 909

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             Y SGHP+  Y+ + +        + V       +R+   V   ++ +T+KG ++ ++  
Sbjct: 910  VYLSGHPVQQYQKLQQLKQTIAIADLVP---NERVRILFYVRQIREIRTKKGEQMAFLEG 966

Query: 1021 SEPAKEYEANFFP 1033
            ++ +KE     FP
Sbjct: 967  TDASKEVSITVFP 979


>gi|300782746|ref|YP_003763037.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32]
 gi|299792260|gb|ADJ42635.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32]
          Length = 1103

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1040 (27%), Positives = 473/1040 (45%), Gaps = 67/1040 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS++S L+GA     ++++ A  +  AIA+TD + ++  + F++ A   G+  
Sbjct: 60   PYAELHCHSNFSFLDGASHPEELVEEAARLELDAIALTDHDGMYGVVRFAEAARELGVDT 119

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128
            + G +L   ++       Q   P P    ++LL    +GY+ L   ++   +  Q  K  
Sbjct: 120  VFGTELSFGLRS-----PQNGVPDPEGEHLLLLARGDQGYRALCRAITAGQIHHQAEKGR 174

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
                L  + E      ++LTG   G +  A   +    A ++L      F  D +YV L 
Sbjct: 175  PSYDLGAVAEEVAGQCVVLTGCRKGAVRSALVAHGPAAAAEKLKELVDRFGRDNVYVELT 234

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDR 245
             HR   D      + QLA    LP VAT  + +   E     D L A+     + + +  
Sbjct: 235  DHRQPLDSTHNDLLTQLAGELGLPTVATTAAHYARPERAPLADALAAIRARRGIDELEGW 294

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                   +L++ +EM ++F   P A+  +  +   C+F L++ AP LP F   E      
Sbjct: 295  LPAAGTAFLRSGAEMDALFRRYPGAVRRSALLGMECAFPLKLIAPELPPFDVPEG----Y 350

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E   LR     G E R          H +  ++++  EL +I  + F GYFLIV D ++
Sbjct: 351  TETTYLRELTKEGAEERFQGKP-----HEEQAKEQIKHELAIIEELGFPGYFLIVWDIVR 405

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            + ++++I +  GRGS A S   YAL IT +D + + LLFERFL PDR   PD D+D   D
Sbjct: 406  FCREHDI-LCQGRGSAANSAVCYALGITKVDSVAYELLFERFLAPDRDGYPDIDLDIESD 464

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+E I+YV  K+G  R+AQ+    + +A++A+RD  RAL     Q D   K I    + 
Sbjct: 465  RREEAIQYVFEKHGRLRIAQVANVITYRARSAVRDAARALGYSPGQQDAWSKQIDRWGSL 524

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              +           E        D +L+++  LE   RH   H+ G+V+   P+SQ+VP+
Sbjct: 525  QNT-----------EKDHDHDIPDEVLQLAFALEDFPRHLGIHSGGMVMCAEPVSQVVPV 573

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
                 +D  V Q+  +    AGL+KFD LGL  L+ L   +D +A+ +  +VDL+ +   
Sbjct: 574  EWARMADRSVIQWEKEDCAAAGLVKFDLLGLGMLSALHYMIDLVAEYKDEQVDLAELDLA 633

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYN 662
            D + Y +L     +G+FQ+ES      L  +QP    D+   V+L RPGPI       Y 
Sbjct: 634  DEKIYDMLCRADAIGVFQVESRAQLATLPRLQPREFYDLAVEVALIRPGPIQGGSVHPYI 693

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G+E+    HPL++  L +T+GV ++QEQ+MQIA  ++ ++ +EAD LR AMG K  
Sbjct: 694  RRKQGREEWTYDHPLLERALHKTKGVPLFQEQMMQIALDVANFTAAEADQLRHAMGSKRS 753

Query: 723  E-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            + +MD  ++RF+ GA+ NG+   +A  IF  L  FA++GF +SHA ++A + + +A+ K 
Sbjct: 754  DRKMDLLRQRFLEGAAANGVDDELAQKIFLKLKAFANFGFPESHALSFAHLVFSSAYFKF 813

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-------NR 834
            ++P  FLA  +  +       +    DAR+  + +  P +N       +         + 
Sbjct: 814  YHPDAFLAGLLRAQPMGFYSPQSLVADARRHGVTVHGPDINRSLPHATLEALPDKGKLHA 873

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +   L+ ++ +G   A+ I+   A +  +  + D   RV         +E+L  AGA   
Sbjct: 874  VRTGLSTVRKIGEDLAKRIVAERAENGDYRDMADVARRVRLT---TPQIEALATAGAFAG 930

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENSSVR 951
            FG  R Q L +       A  V   R  +   +           D + +    V      
Sbjct: 931  FGGDRRQALWT-------AGAVAGERPERLPGLVGSPAPVLPGMDGLDVAAADVW----- 978

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
                    G     +P +  +  L ++G+           G  + +   V  +Q+  T  
Sbjct: 979  ------ATGVSPDSYPTEFIRDRLDELGVVPAGGLADLDDGARVLIGGAVTHRQRPATAG 1032

Query: 1012 GSRIGWVTFSEPAKEYEANF 1031
            G  + ++   +         
Sbjct: 1033 G--VTFLNIEDETGMINVIC 1050


>gi|88705720|ref|ZP_01103430.1| DNA polymerase III, alpha subunit [Congregibacter litoralis KT71]
 gi|88700233|gb|EAQ97342.1| DNA polymerase III, alpha subunit [Congregibacter litoralis KT71]
          Length = 1036

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/1042 (27%), Positives = 471/1042 (45%), Gaps = 79/1042 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L   S YS L GA     ++ + AA     IAITD  +L   ++    A   G+  
Sbjct: 2    PYCELHCLSCYSFLRGASRPEELVAQAAAKGYSGIAITDECSLAGVVKAHVAAKEHGLSL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +                     ++ L  T   Y  L  L+S        K   
Sbjct: 62   IIGSEFTLTEGIR----------------LLALAPTRAAYGELSGLISLARRRSP-KGEY 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + L  +       LI+         +R +                +L  +R+++ +   
Sbjct: 105  EVTLRDVIFHLKRCLIVWLPREDSDANRGYGR-----------QLARLCRERVWIGVHYL 153

Query: 190  RGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             G D  R  + +Q LA   +LPLVA  +           HDV+ A+ H+  V+   R R+
Sbjct: 154  LGNDELRRYRALQTLATHLQLPLVACGDVRMHCATRKPLHDVMTALHHNCSVAALGRRRL 213

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 +L++  ++   + +  E L  T+ I RRC F L       P+ +  +  + +   
Sbjct: 214  PNAQQHLRSVKQLERFYPN--ELLTETLNILRRCHFSLDELRYEYPKEVVPDGHNAR--- 268

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR     G   R   G           R+R++ EL +IA + +  YFL V D +++A
Sbjct: 269  -DYLRELTWQGASQRWPDGT------PTAIRERIEKELALIAELDYEYYFLTVYDIVRFA 321

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A SV  Y L IT++ P + SLLFERF++ +R   PD D+DF  +RR
Sbjct: 322  RGRGI-LCQGRGSAANSVVCYCLLITEVSPEKVSLLFERFISRERDEPPDIDVDFEHERR 380

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KY   R A   T  + +A++A+RDVG+AL +    VD L K +        
Sbjct: 381  EEVIQYIYEKYSRRRAALAATVITYRARSAVRDVGKALGLDPLFVDDLAKSLAWWDKQRD 440

Query: 488  SLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                 ++     +    +P++ RL  ++ Q++ G  RH S H  G VI   P+SQLVP+ 
Sbjct: 441  LEARFSEHGLQTDNDDGEPNIARLFYQLVQEILGFPRHLSQHVGGFVISRGPISQLVPVE 500

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDD 605
                +D  V Q++   IE  GL+K D L L  L+ ++KSL  + +   +   L  IP +D
Sbjct: 501  NASMADRTVIQWDKDDIEALGLLKVDVLALGMLSAIRKSLALVNRYDPRIRTLQDIPVED 560

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
              TY +L    ++G+FQ+ES      L  ++P C  D++  +++ RPGPI  D +  Y  
Sbjct: 561  VATYRMLQKADSIGVFQIESRAQMSMLPRLKPACFYDLVIEIAIVRPGPIQGDMVHPYLR 620

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK- 722
            R+ G E I      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRA+    + 
Sbjct: 621  RRQGLEDISYPDEAVKSVLERTLGVPIFQEQVIRLAMVAAGFSGGEADQLRRAITNWGRN 680

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             ++   +++   G  + G S+  A  +F+ +  F  YGF +SH+A++A+++Y ++W+K H
Sbjct: 681  SKLLTFEKKLTEGMLRRGYSEDYARRLFDQIKGFGGYGFPESHSASFALLAYVSSWLKCH 740

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-------I 835
            +P  F    +  +        +  QDAR+ ++  +PP VN    D ++ D+        I
Sbjct: 741  HPSAFYVGLLNSQPMGFYSPSQLIQDARRHDVVALPPDVNHSDWDHQLLDDGQQGTRAPI 800

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  IKG+    AR I  A  D P+  + D   R     LNR+ +E+LV A AL    
Sbjct: 801  RLGLRLIKGLSRDAARRISMARRDTPYRQIADLRKRA---ALNRKDMEALVDADALSSLS 857

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVR 951
              R Q    +  +                 + AHE      + SD+I+L + +V  S + 
Sbjct: 858  GHRHQARWQVMAL------------EPERPLLAHEHYTAGPSPSDEISLPEPAVAESVI- 904

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               + R  G     HPL + +        K   +      G  +R+A +V  +Q+  T  
Sbjct: 905  --ADYRSTGVTLRAHPLALLRSETPFNQCKCQRDLELMDDGRFVRIAGLVTCRQRPGTAS 962

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  + ++T  +         +P
Sbjct: 963  G--VLFLTLEDETGNNNVVVWP 982


>gi|327542106|gb|EGF28600.1| DNA polymerase III, alpha subunit [Rhodopirellula baltica WH47]
          Length = 1045

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/919 (33%), Positives = 491/919 (53%), Gaps = 37/919 (4%)

Query: 146  MLTGGSSGPIDRAFFFN-----SSQVAEKRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQ 199
             L+G  S    RA           + A+K    F K+FGDR ++ +  +     R +   
Sbjct: 2    CLSGCVSSEFSRAILKGIQTKEHEEEAKKIAGWFHKVFGDRYFIEIMNNDVDIQRTQLEG 61

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL-KNRS 258
             V +A    LPLVAT++  ++++ED EA D+++ +      +   R ++  D +  ++  
Sbjct: 62   AVDIANKMGLPLVATSDCHYVNQEDAEAQDIMLCINTGRFRTDNTRMKMENDQFFLRSPQ 121

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
            +M   F  L +A+  + EIA      L+ +    P F   +    +    + LR     G
Sbjct: 122  QMYEKFPGLEDAVGRSQEIADTVDIQLEFNKYFFPSFPCPD----ELTPLDYLRKLCEQG 177

Query: 319  LEVRLAQGAIA--KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            L  R          G  + +   RLD EL+VI ++ +  YFLIV DF+  A+   I    
Sbjct: 178  LMERYEGDDERIIDGKLSDEVMARLDRELDVIEKLGYPTYFLIVWDFVNHARDIGIS-AT 236

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
             RGSG G++  YAL ++ + PLR+ LLFERFL+  R   PD DIDF ++RR EVI YV+ 
Sbjct: 237  ARGSGVGAIVCYALYMSHVCPLRYDLLFERFLDESRTEPPDIDIDFEKERRIEVIDYVKE 296

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            +YG E V QI TFG+L AKAA++D GRAL +P S+V+++ +L+P++    +  +++   +
Sbjct: 297  RYGSEMVCQIGTFGTLAAKAAIKDTGRALGIPLSRVNQITELVPDELKITI-AKSLEKSA 355

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
              +     DP +  LL+++ K+EGL R+  THAA +VI D+PL++ VP+ R       +T
Sbjct: 356  DLKMIYDGDPEIRELLDLAMKIEGLARNVGTHAAAVVIADKPLTEYVPLGRVPGKQDVIT 415

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTK 615
            Q+ M  +E +GL+K DFLGL+ LT+L +++  + Q     +D    P DD  +Y LL   
Sbjct: 416  QWAMVDVEASGLLKMDFLGLRNLTILSRTVKLVEQTTGTTIDPLKFPLDDKPSYALLQRG 475

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS 673
             T G+FQLES G+R  L+ M+PD   DIIA  +LYRPGP++  +V  Y N K+G+++   
Sbjct: 476  ETKGVFQLESGGIRDLLQRMKPDTFNDIIATAALYRPGPLEGGMVDDYVNIKHGRQQPEY 535

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
             HP++  +L+ET  +++YQEQVM+I   L    L++A    +A+ KK +  +D   + FI
Sbjct: 536  KHPVLKEILEETNSIMVYQEQVMRILNRLGDVPLAKAYTCIKAISKKKQALIDANHDVFI 595

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +G+ KNG+++  A +I+ L+ KFA YGFNKSH+ AYA+++YQTA++K HYPVEF+AA ++
Sbjct: 596  AGSIKNGLAEKDAEDIWNLIVKFAGYGFNKSHSTAYALVAYQTAYLKAHYPVEFMAALLS 655

Query: 794  LEMDN-----VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             ++        + + +  +D  + +I+++PP+VN    DF V D +I ++L+AIK  G +
Sbjct: 656  SDISGRNFKRKDALVEHMEDCDRMDIEVLPPNVNQSDADFGVLDGKIPFALSAIKACGGS 715

Query: 849  TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            TA  I E    + PF  + DFC RVD    NR  +E+L+ AGA DCFG  R QL   L+ 
Sbjct: 716  TAISIEEERKKNGPFKDIFDFCERVDPHDCNRSSIETLIKAGAFDCFGAKRSQLASVLER 775

Query: 908  IQKYAQWVEKNRTNKHEN--------IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
              +    V+ ++     +          A   G  S  + L          +   E+ VL
Sbjct: 776  AMQAGAKVQADKKTGQASFFDAFDEEDDADSNGESSAAVPLPDIEEWPDREKLLAEKEVL 835

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK---G--SR 1014
            GFY   HPL  ++  L        E        + + +  M+ S +   T+    G  S+
Sbjct: 836  GFYLDSHPLAEFENKLATFRTHTTESMADCKDRDEVIVGGMISSIKIAHTKNPKPGAPSK 895

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
                   + A       +P
Sbjct: 896  YANFDLEDMAGSVRCICWP 914


>gi|53803568|ref|YP_114587.1| DNA polymerase III subunit alpha [Methylococcus capsulatus str. Bath]
 gi|71151827|sp|Q605W1|DNAE2_METCA RecName: Full=Error-prone DNA polymerase
 gi|53757329|gb|AAU91620.1| putative DNA polymerase III, alpha subunit [Methylococcus capsulatus
            str. Bath]
          Length = 1047

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1052 (26%), Positives = 462/1052 (43%), Gaps = 96/1052 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S++S L GA     ++ + A     A+A+TD  +L   +    +A   G + I
Sbjct: 9    FAELHALSNFSFLRGASHPKELVAEAARLGYAALALTDECSLAGVVRAHAEAKTLGFKLI 68

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  ++                  P +VLL     GY +L   ++      + K   R
Sbjct: 69   IGSEFRLEDG----------------PKLVLLAMDRRGYGQLAAFITLGRRAAE-KGEYR 111

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RH 189
            +    L+    +  I +      P D                   +LF  R ++ ++   
Sbjct: 112  LLRGQLETHPLDQCIAIWLPEDAPDDETG------------AWLARLFPARCWIGVELFL 159

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
             G D  R S +  L     LPLVA N+    + E     D L A+     +++       
Sbjct: 160  SGGDGLRLSVLQALGERLGLPLVACNDVHMHARERQPLQDTLTAIRLGRPLAELGYALFP 219

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + +L+    +  I+      LE ++ IA RC F L       P  +  +         
Sbjct: 220  NGERHLRPIEFLARIYPRA--LLEESLRIAERCRFSLDELRYEYPAELVPDG----YTAI 273

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     G+  R  +GA  K       R++++ EL +I  M +  +FL V D +++A+
Sbjct: 274  AWLRELTRQGMAERWPEGAPDK------VRRQVEHELELIGAMAYEPFFLTVHDVVRFAR 327

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I +  GRGS A S   Y L IT++DP R  LLFERF++ +R   PD D+DF  +RR+
Sbjct: 328  SRGI-LCQGRGSAANSAVCYCLGITEVDPARLDLLFERFISRERNEPPDIDVDFEHERRE 386

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  KYG  R A   +  + + ++A+RDV RAL    S++D L +++         
Sbjct: 387  EVIQYIYRKYGRHRAALAASLITYRVRSAVRDVARALGFSPSRIDTLARVLDRHGVAETL 446

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             + +A+          +P+V RLL + Q L G  RH S H  G VI    LS  VP+   
Sbjct: 447  PERLAE----AGLASENPAVRRLLALMQMLVGFPRHLSQHVGGFVIAAEDLSHWVPVENA 502

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               +  V Q++   +E  GL+K D L L  LT ++K+L ++ + RG    L+ +P +D  
Sbjct: 503  AMPERTVIQWDKDDLESLGLLKVDVLSLGMLTAIRKALAYVGEGRGRPFTLADVPPEDPA 562

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRK 665
             Y +L    ++G+FQ+ES      L  ++P    D++  +++ RPGPI  D +  Y  R+
Sbjct: 563  VYEMLQRADSIGVFQVESRAQMSMLPRLRPQSYYDLVIQIAIVRPGPIQGDMVHPYLTRR 622

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKEE 724
             G E +    P ++ +LK T GV I+QEQVMQ+A + +G++  EAD LRRAM     K  
Sbjct: 623  AGLEPVSYPSPAVEKVLKRTLGVPIFQEQVMQLAMVAAGFTPGEADRLRRAMAAWHRKGG 682

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            ++  +++ + G  + G  +  A  I+  +  F +YGF +SH+A++A+++Y +AW+K H+P
Sbjct: 683  LEPFEKKLMDGMRERGYEERFARQIYRQIRGFGEYGFPESHSASFALLAYVSAWLKCHHP 742

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------------ 832
              F  A +  +        +  QDAR+  +++ P  VN    D  +              
Sbjct: 743  AAFACALLNSQPMGFYGPSQLIQDARRHGVEVRPIDVNHSDWDCTLEPTEIPNPLSLWER 802

Query: 833  -----------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                         +   L  + G  +  A+ + +A    PF S++D  +RV     +RR 
Sbjct: 803  VGVRALQTGSNPALRLGLRLVNGFSSAAAQRLSDARRQGPFQSIQDLATRVPL---DRRE 859

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE+L  A AL   G  R +               E         ++A  +   ++ +  +
Sbjct: 860  LEALAAADALHGLGGHRHRAFW------------EAAGVEAPTPLYAEPQFAEAEPLLRK 907

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                E+       +    G     HPL + +  L + G +  E       G   R+A +V
Sbjct: 908  PGEAED----VIADYAAAGASLRRHPLSLLRERLDRRGFRTAEALWQVRNGAIARVAGLV 963

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V +Q+  T  G+   +VT  +   +     +P
Sbjct: 964  VCRQRPMTANGTT--FVTIEDETGQINLIVWP 993


>gi|153010470|ref|YP_001371684.1| DNA polymerase III, alpha subunit [Ochrobactrum anthropi ATCC 49188]
 gi|151562358|gb|ABS15855.1| DNA polymerase III, alpha subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 1059

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/1047 (27%), Positives = 463/1047 (44%), Gaps = 83/1047 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P++  LQV S +S L GA S   +    AA    A+A+TD N L   +   + A  AG
Sbjct: 2    SAPAYAELQVTSHFSFLRGASSAEELFAAAAAMGIEALAVTDRNTLAGIVRAHEAAKEAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ I+GC                +       S+++  +    Y RL  L+S   L     
Sbjct: 62   VRLIVGC----------------RLDLACGMSVLVYPTDRAAYSRLCRLLS---LGKGRA 102

Query: 127  QSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
               R  L W   +   EGLI++                 +    RL   +  FGDR Y+ 
Sbjct: 103  GKARCHLEWDDLVAYGEGLIVVLAPDLAD----------ETCGLRLRRLRDAFGDRAYLG 152

Query: 186  LQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L  R R  D+ R  ++  LA    +P V TN+ LF         DV+ A+ H+  V    
Sbjct: 153  LTLRRRPNDQMRLWELSTLAAGLGVPTVVTNDVLFHEPGRRILQDVVTAIRHNLTVDALG 212

Query: 245  -RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R     D YLK  +EM  +F+  PEAL  T EIA RC F L       P    +E DD 
Sbjct: 213  TRRDRHADRYLKPPAEMHRLFARWPEALARTREIADRCRFSLDELRYQYP----EERDDP 268

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                +  L      G   R  +G         +    L  EL +I ++ ++ YFL V   
Sbjct: 269  ALTPQETLERLTWEGAASRYPEGV------PDEVTAALKHELALIGKLDYAPYFLTVNSI 322

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+   I +  GRGS A S   Y L IT IDP R  LLFERF++ +R   PD D+DF 
Sbjct: 323  VRFARSRGI-LCQGRGSAANSAVCYVLGITAIDPGRNDLLFERFVSEERREPPDIDVDFE 381

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EVI++V   YG ER A   T    ++K ALRDVG+AL +P   +  L   +    
Sbjct: 382  HERREEVIQWVYEHYGRERAALTATVIRYRSKGALRDVGKALGLPEDLIQTLSGQLWGWS 441

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               V+ Q + D          D  +   LE++ +L G  RH S H  G V+    L  LV
Sbjct: 442  EAGVTEQQLRD----LNLNPQDRRLRLTLELAAQLRGAPRHLSQHPGGFVLTHDRLDDLV 497

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602
            P+         + +++   I+    +K D L L  L+ +++ LD LA+   +++DL+ IP
Sbjct: 498  PIEPAAMEGRQIIEWDKDDIDALRFMKVDVLALGMLSCMRRGLDLLAEHKDIRLDLASIP 557

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D +  
Sbjct: 558  AEDPRTYAMIRKADTLGTFQIESRAQMSMLPRLKPRTYYDLVVQVAIVRPGPIQGDMVHP 617

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+ G E++    P ++ +L +T GV ++QEQ M++A   +G++  EAD+LR++M   
Sbjct: 618  YLRRREGLEEVDYPRPELEKVLGKTLGVPLFQEQAMRVAIECAGFTAGEADLLRKSMATF 677

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    + K ++R ISG  + G  +  A   F+ L  F  YGF +SHAA++A+I+Y +AW+
Sbjct: 678  KHTGGVSKFRDRLISGMIERGYEQDFAERTFQQLEGFGSYGFPESHAASFALIAYASAWL 737

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------N 833
            K  +P  F AA +  +        +  +DAR+  +++ P  +N    D  +         
Sbjct: 738  KCWHPDVFCAALLNAQPMGFYAPAQIVRDAREHEVEVRPVCINASRWDCTLEPTGDESRF 797

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +   L  +KG+    A  I+ A  D+ F S++D   R          + +    G    
Sbjct: 798  AVRLGLRMVKGLANAHAAAIVAAQGDEMFTSVDDLWRRAGVPVAALDQIAAAD--GFRPA 855

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--------KGTFSDKITLEKFSV 945
            FG +R +           AQW  K   ++   +FA                 I L     
Sbjct: 856  FGLARRE-----------AQWAIKGLRDEELPLFAAASEREGRTVPELDEPAIALRAMPA 904

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                V    +   +G     HP+   +  L +  I    E++A      +  A +V+ +Q
Sbjct: 905  GREVV---EDYGHIGLSLRRHPVSFLREDLARRRIVTCAEAMAARDQRWLEAAGIVLVRQ 961

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  +  G  + ++T  +         +
Sbjct: 962  RPGSANG--VMFITLEDETGIANLVVW 986


>gi|56964489|ref|YP_176220.1| DNA polymerase III alpha subunit DnaE [Bacillus clausii KSM-K16]
 gi|56910732|dbj|BAD65259.1| DNA polymerase III alpha subunit DnaE [Bacillus clausii KSM-K16]
          Length = 1095

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1021 (32%), Positives = 537/1021 (52%), Gaps = 60/1021 (5%)

Query: 15   QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             V+S YSLL+    ++ ++         A+++TD + L+ A+ F Q    AG++P++G +
Sbjct: 7    NVYSEYSLLQSTNRVDELVQAAKEAGYTALSLTDRHVLYGAVPFFQSCRKAGLKPLLGLE 66

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            + + + +              +  + ++    EGY++L+      +    G Q+ +  + 
Sbjct: 67   VTVRLDEE-------------IIPVRMVAKNEEGYRQLV-----AHSTSLGFQTKQAAIE 108

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR 194
                         T              +   A+   L F +     L   ++   G   
Sbjct: 109  LETWKANS-----TAC-----FVFIPKEAFVAAKGNWLHFWERLAGGLEAFIELAGGESD 158

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                +++Q A  H++P VA   + FL +ED   + ++ A+   T  +  +        +L
Sbjct: 159  ---HELIQFANAHQIPCVAAPPTRFLRKEDAPVYQLVRAIGAGTTTTHLELEEGWQRWHL 215

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
               + +   F +  +AL     +A +    L    P +P +     +   K     L   
Sbjct: 216  PTANSLKERFPE--KALLQARALAEKVEPYLPEEKPRIPAYDGLTVEQADKR----LETL 269

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
               GL+ R    ++       +  +RL+ EL +IA   +S YFLIVADF+ +AKK+ I  
Sbjct: 270  CQQGLKARYKAVSV-------EAERRLEHELAIIAERGYSSYFLIVADFVGYAKKSGILT 322

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
            GPGRGS A S+ AY L ITD+DPL   LLFERFLNP+R S+PD D+DF   RRDEVI YV
Sbjct: 323  GPGRGSSASSIVAYTLFITDVDPLAHDLLFERFLNPERASLPDIDVDFPDYRRDEVIAYV 382

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK-LIPNDPAHPVSLQAIA 493
            + ++GH+RVAQ++TFG+  A+AA+RDVG+AL + ++ VDR+ K LIP      +SL    
Sbjct: 383  RERFGHDRVAQVLTFGTFAARAAIRDVGKALSIRHTFVDRVAKSLIPA----SLSLNEAQ 438

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            +   F+   L  P +D LL  ++++EGL RHASTHAAG++I D+PL+    +   +    
Sbjct: 439  EKGVFK--GLESPELDELLFFAKQIEGLPRHASTHAAGVIISDKPLNNKTALQLGI-DGH 495

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLL 612
             VTQ +M  + + GL+KFDFLGL+ LTLL++ L  + Q   V ++L  IP +D  T+ LL
Sbjct: 496  AVTQADMDSLARLGLVKFDFLGLRNLTLLERMLKVIEQEEGVALNLQHIPLNDKATFQLL 555

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
                + GIFQLES+GMRQ L+ +QP   EDI+A  +LYRPGP+  I  Y   K+G  + +
Sbjct: 556  QQGKSTGIFQLESAGMRQVLKQLQPSQFEDIVATSALYRPGPMAFIPEYIRGKHGHTQAI 615

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
              H  + P+++ T GV++YQEQ+MQ+ Q  + YSL+EAD+ RRA+ KK  + + +++ +F
Sbjct: 616  VPHESLRPIVEPTFGVLVYQEQIMQVVQATANYSLAEADLFRRAISKKQHDVIIQERHQF 675

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I  A +NG     A  IF L+ +FA+YGF KSHA AY+ ISY  A+++ H+P  F AA  
Sbjct: 676  IHRAVENGFLPEEAEAIFSLIERFANYGFPKSHATAYSFISYWLAYLRVHFPAAFFAALF 735

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +    N EK+  +  +A++  I+++PPSV    + F++ + +I + L  I GV       
Sbjct: 736  SSVWQNHEKLYSYINEAKKEGIRVLPPSVCKSGLLFELENGQIRFGLLPISGVNVQAVNE 795

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            I+         +L  F + V S  +N+RV+E+L+ AGALD FG SR  LL +LD  + + 
Sbjct: 796  IISKRRKNSDSNLFMFYAHVASTAVNKRVMEALIKAGALDEFGQSRATLLGNLDKAEAFV 855

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
            + V   + +    +F  +             +        E E+ VLGFY SGHP++   
Sbjct: 856  EQVRSFKASS-GGLFTIKPAV----PAYLDVTPSTKMEDLEGEREVLGFYLSGHPIENEL 910

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              L   G     E + +     +R+A MV+  ++  T+KG  + ++T S+ + E     F
Sbjct: 911  ERLAPFGRIPLAECIPSR--KPVRIAGMVIDVKKIVTKKGEAMAFLTLSDESGECSCVAF 968

Query: 1033 P 1033
            P
Sbjct: 969  P 969


>gi|317405112|gb|EFV85458.1| error-prone DNA polymerase [Achromobacter xylosoxidans C54]
          Length = 1075

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/1050 (25%), Positives = 444/1050 (42%), Gaps = 76/1050 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  LQ  S++S L+GA     +  + A     A+AITD  +L   +    +A    + 
Sbjct: 19   PGYAELQCQSNFSFLQGASHPEELAARAAELGYAALAITDECSLAGVVRAHMEAKTQKLP 78

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    +              P      + LL  T EGY  L EL++        K  
Sbjct: 79   LIIGATFRLRAG-----------PEAAPLDLTLLAQTREGYGNLSELITLARTR-APKGE 126

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+              +        I    + +      ++       F  R +V L  
Sbjct: 127  YRLAPEDFTAPPPGYEHLRHLPECLAILSPVYGDDPDRMAQQARWLAATFPRRAWVGLTL 186

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
             +R  D    + V   A   ELP+VA              HD L  +     VSQ     
Sbjct: 187  LYRSRDDLHRAAVDHAARAAELPVVALGQVQMHVRSRKPLHDTLTGIRTHQCVSQCGYAL 246

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  + +++   PEAL  T+ +ARRC+F L       P  I          
Sbjct: 247  SGNAEQHLRTRMRLANLYP--PEALAQTLVVARRCAFSLDELRYEYPDEIIPRG----HT 300

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR + +AG   R   G            ++++ EL +IA + +  YFL V D + +
Sbjct: 301  PATYLRQETLAGAARRFPDGT------PDYVSEQIEKELALIADLHYEAYFLTVYDIVLY 354

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ N I +  GRGS A SV  Y L IT++DP R + LFERF++ +R   PD D+DF   R
Sbjct: 355  ARNNGI-LCQGRGSAANSVVCYCLGITEVDPRRGNNLFERFISKERNEPPDIDVDFEHQR 413

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R++VI+Y+  KYG +R A      S + ++ LRD GRAL +    +D + +         
Sbjct: 414  REDVIQYIYRKYGRQRAALTAVVISYRPRSVLRDTGRALGVDPGVIDAVARAHQWWDGKK 473

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L+ +       E+++A     +   ++Q L G  RH S H  G VI    LS+LVP+ 
Sbjct: 474  EMLRTLGACGLDPESQVA----RQWAALAQTLMGFPRHLSQHPGGFVISRGKLSRLVPIE 529

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                +D  V Q++   ++   L+K D L L  L+ L+++L+   QR    + L  IP  D
Sbjct: 530  NAAMADRSVVQWDKDDLDALNLLKVDVLALGMLSALRRTLELAGQRRGQPLRLQDIPEGD 589

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
              TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +   Y  
Sbjct: 590  DPTYDMICDADTIGVFQIESRAQMTMLPRLRPRKYYDLVVQVAIVRPGPIQGGMVHPYLR 649

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+ GKE I      +  +L  T GV I+QEQVMQIA + +G+S  EAD LRR+M   K K
Sbjct: 650  RRQGKEDIDYPSDKVKGVLSRTMGVPIFQEQVMQIAVVAAGFSPGEADQLRRSMAAWKRK 709

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +DK + + + G   +  +   A  +F  +  F +YGF +SHAA++A+++Y ++W+K H
Sbjct: 710  GGVDKYRAKLVGGLLAHNYTLEFAEALFRQIEGFGEYGFPESHAASFALLAYASSWLKRH 769

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----------- 831
             P  FLAA +  +        +  QDAR+  ++++P  V     D  +            
Sbjct: 770  EPEAFLAALLNSQPMGFYAPAQLVQDARRHGVRVLPVDVTVSGWDAALETPPADAPPRRS 829

Query: 832  ----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                         +   L+ I+G+   +AR I  A A+ PF S  D   R    + +   
Sbjct: 830  HPHAPSPDETRPAVRLGLSLIQGLHEDSARRIEAARAEAPFTSTGDLARRAALTRHDLNA 889

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            L +                 L++L   ++ A W      +  + +    +     +    
Sbjct: 890  LAAG--------------DALRTLAGHRRQASWEAAASVHSRDLL----RDAAIHETEAP 931

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            + +    +     + R +G     HP+++ +P L     +              R   +V
Sbjct: 932  RLAAPTENQTVAADYRSVGLTLRRHPVELLRPQLAARNFQPASALNGYPDKRVARACGIV 991

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
              +Q+ +T KG  + +VT  +         
Sbjct: 992  TVRQRPQTSKG--VIFVTLEDETGPVNVVV 1019


>gi|16262942|ref|NP_435735.1| DnaE3 DNA polymerase III alpha chain [Sinorhizobium meliloti 1021]
 gi|71151852|sp|Q92ZJ6|DNE22_RHIME RecName: Full=Error-prone DNA polymerase 2
 gi|14523588|gb|AAK65147.1| DnaE3 DNA polymerase III alpha chain [Sinorhizobium meliloti 1021]
          Length = 1087

 Score =  809 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/1047 (26%), Positives = 466/1047 (44%), Gaps = 88/1047 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQV + +S L  A S   +          A+ + D N+L   +   + + A G++ 
Sbjct: 2    RYAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC                +       SI++  +    Y RL  L++    L +G+   
Sbjct: 62   VVGC----------------RLDLQDGMSILVYPTDRAAYSRLTRLLT----LGKGRGGK 101

Query: 130  RICLSWLQE--IGTEGLI-MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              C+    +  +  EGLI +L    +  +                    ++FGDR YV+L
Sbjct: 102  ANCIIHFDDVALYAEGLIGILVPDLADEVCAVQLRK-----------IAEVFGDRAYVSL 150

Query: 187  Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD- 244
              R R  D+ +  ++  LA  H +  + TN+ LF      +  DV+  +     +     
Sbjct: 151  CLRRRPNDQLQLHELTNLAVKHRVKTIVTNDVLFHEHGRRQLQDVVTCIRTGMTIDDVGF 210

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  D YLK   EM  +F   PEAL  T+EI  RC F L+      P    +E   + 
Sbjct: 211  ERERHADRYLKPPEEMARLFPAYPEALARTMEIVERCRFSLEELVYQYP----EEALILG 266

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L++    G+  R  +G            + +  EL +I  MK++ YFL V   +
Sbjct: 267  MTAQQSLQHYTWEGVRARYPEGLPTH------VEKTIRHELALIETMKYAPYFLTVFSIV 320

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  
Sbjct: 321  RYARSQGI-LCQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEH 379

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI+++   YGH++ A   T    +AK A+RDVG+AL +P   +  L   I     
Sbjct: 380  ERREEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALDLPEDLIRTLSSGIW---- 435

Query: 485  HPVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
               S      + + RE  L +P   RL   L ++Q+L G  R+ S H  G V+    L  
Sbjct: 436  ---SWSETVGERQVRELGL-NPDDRRLTLTLRLAQQLMGAPRNLSQHPGGFVLTHDRLDD 491

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600
            LVP+     +D  V +++   IE    +K D L L  LT + K+   +   +   +DL+ 
Sbjct: 492  LVPIEPATMADRQVIEWDKDDIEALKFLKVDVLALGMLTCMAKAFALISEHKHEDIDLAT 551

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            IP +D  TY ++    TLG FQ+ES      L  M+P    D++  V++ RPGPI  D +
Sbjct: 552  IPQEDPATYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAIVRPGPIQGDMV 611

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R+ GKEK+    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M 
Sbjct: 612  HPYLRRREGKEKVEYPTPELEAVLHKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMA 671

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K    + + K++ ++G  +NG +K  A   F  L  F  YGF +SHAA++A+I+Y + 
Sbjct: 672  TFKFTGGVSRFKDKLVNGMIRNGYTKEFAEKTFSQLEGFGSYGFPESHAASFALIAYASN 731

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------G 831
            ++K ++P  F AA +  +        +  +DAR+  +++ P  +N    D  +      G
Sbjct: 732  YIKCYFPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSRWDCMLEPIDGSG 791

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             + +   +  ++G+ T  A  I+ A AD+PF S++D   R     +    L  L  A A 
Sbjct: 792  GHAVRLGMRLVRGLATADAARIVAARADEPFTSVDDMWRR---SGVPVASLVELAEADAF 848

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV-----E 946
                      L SL   ++ A W  K   ++   +F       +  I  ++         
Sbjct: 849  ----------LPSLSLERRDALWAIKALRDEPLPLFTAAADREARAIAEQEEPEVELRQM 898

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                    +    G     HPL   +  L K  I    +++    G  +  A +V+ +Q+
Sbjct: 899  TDGQNVVEDYSHTGLTLREHPLRFMRDDLAKRRIVTCAQAMTAHDGQWLMAAGLVLVRQR 958

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + KG  + ++T  +         +P
Sbjct: 959  PGSAKG--VMFITIEDETGIANIVVWP 983


>gi|295398598|ref|ZP_06808630.1| DNA-directed DNA polymerase III alpha subunit [Aerococcus viridans
            ATCC 11563]
 gi|294973199|gb|EFG48994.1| DNA-directed DNA polymerase III alpha subunit [Aerococcus viridans
            ATCC 11563]
          Length = 1162

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/1044 (30%), Positives = 521/1044 (49%), Gaps = 55/1044 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L V+S+YSLL   +S+   +   A      + + D N +  +L F +     GI P+
Sbjct: 2    FVPLHVNSAYSLLTSPMSVEAYVQAGATAGYTHLGLADVNVMSGSLAFVRACEQNGITPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  +  ++ +                 +V+     EGYQ L+ L S + L  +  +   
Sbjct: 62   IGLTVQFNIDN-------------VKEELVVYAKNYEGYQHLMALSSSLKLQAEANRRAI 108

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----SQVAEKRLLTFKKLF-GDRLYVN 185
                    +  +  I++    +GP  R              E+ LL +++ F  D+L++ 
Sbjct: 109  YQEIT---MHADDYIVIFSAMTGPHMRYLKQGDGQADYDQLEEELLWWRRHFSDDQLFLG 165

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            L      +++    +++L+    +PLVA  +  + + +D+    VL A+ ++  ++  D 
Sbjct: 166  LSALE-NEQFHAKAIIELSEQSGVPLVAMPHIQYANPDDFFTQQVLEAIDNNKPMTGIDE 224

Query: 246  P-RVTPDHYLKNRSEMVSIFSD-------LPEALENTVEIARRCSFILQVHAPILPRFIE 297
              +V   H L+N  +   ++ D         ++L+      +    +      +LP++  
Sbjct: 225  LKQVKGSHALRNPDQWAKMYQDPDDQDSVYKDSLDRLEVAVKGIDIVFPQIETLLPKYPL 284

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                         L++ A AGL  R+A            Y  RL +EL+VI  M F  YF
Sbjct: 285  PSEYTA---TPKYLKDLAEAGLVKRVAN-------ITDAYTDRLAYELSVIHDMGFDDYF 334

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV D + +A +++I  GPGRGS AG++ AY L ITD+DP+   LLFERFLNPDR +MPD
Sbjct: 335  LIVWDVMNYAHQHHIQTGPGRGSAAGALVAYVLEITDVDPIANDLLFERFLNPDRQNMPD 394

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  ++R EV+ YV  KYG   VAQI TFG+  A+ ALR+VG         +     
Sbjct: 395  IDLDFPDNKRQEVLDYVYRKYGDNHVAQIATFGTFGARQALRNVGSVFGKAQVTLSEWAN 454

Query: 478  LIPNDPAHPV-SLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             + N+P  P  +L ++ D S + RE    +       + ++KLEGL RH STHAAG+VI 
Sbjct: 455  TVGNNPNLPAETLTSVYDQSQKLRELIENEDHGQLWFDTARKLEGLPRHVSTHAAGVVIA 514

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
            D+PL+   P+     + +P TQ+ M  +E  GL+K DFL L  LT+L   L  + +    
Sbjct: 515  DQPLTLHTPLQ-ASSTHIPNTQYTMGDVEAVGLLKVDFLSLSNLTILHDGLAAVGKLTSR 573

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V    IP DD +TY +     T G+FQ ES G++  L+ + P  IED++A+ +LYRPGP
Sbjct: 574  PVKALDIPLDDPKTYEIFQHADTNGVFQFESDGIKNVLKQVAPTSIEDVVAVNALYRPGP 633

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +  I  +  RK+G+E I   HP + P+L  T G+++YQEQVMQ+ Q ++G+SL EAD+LR
Sbjct: 634  VQQIPHFVARKHGREAIAYPHPDLAPILAPTYGIMVYQEQVMQVTQKIAGFSLGEADILR 693

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RA+GKK  E ++  +++FISGA +NG  +++AV I++ +  FA+YGFNKSH+ AY+ ++Y
Sbjct: 694  RAIGKKKHETIENVRKQFISGAIENGYQESVAVQIYDYIEAFANYGFNKSHSFAYSYLAY 753

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            Q AW+K +YPV F   ++       +K K    +A+   ++++ P +N       V D+ 
Sbjct: 754  QLAWIKANYPVAFYYGNLKHTRIYDKKGKNLVLEAKNHGVEVVNPDINKSFYGLSVVDDH 813

Query: 835  IY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
                 L  I+G+       +++A  A+ PF    DF  R+    L   +L  L  AGALD
Sbjct: 814  QLQLGLGDIRGIPKRAVEEMIQAREAEGPFKDFTDFIHRLGKLALKEDILVKLAQAGALD 873

Query: 893  CFGYSRMQL-LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
             FGY+R  L L+++  +  + Q  + +   +  ++   +  +      + +    +    
Sbjct: 874  SFGYNRRTLQLEAIPKMITHEQLFKTD-NQRQTSLLGDDDLSAMFAPKIVEIDEFDQHQL 932

Query: 952  FENEQRVLG--FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             ENE   LG     S    + Y+    + GI  Y E       +       V++ ++  T
Sbjct: 933  IENEIETLGQALSIS--LFEDYEGFY-QTGIIDYIE--NLKENSKAFFLGEVIAVKRITT 987

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            +K   + +VT  +   +     FP
Sbjct: 988  KKNQPMAFVTVKDQTGQISVTAFP 1011


>gi|227510300|ref|ZP_03940349.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis
            ATCC 27305]
 gi|227189952|gb|EEI70019.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis
            ATCC 27305]
          Length = 1093

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/1009 (33%), Positives = 520/1009 (51%), Gaps = 48/1009 (4%)

Query: 32   ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91
            ++ +       A+A+TD N ++ A+EF      AGIQPII           L +   G  
Sbjct: 1    MVTEAKKRGYKALAMTDINVMYGAVEFYDTCIDAGIQPII----------GLTLNLPGVM 50

Query: 92   PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151
                  SI+LL     GYQ L+++ +   L + G+  V I          +GL ++    
Sbjct: 51   LSENNYSILLLAKNQTGYQNLLKIST---LKNSGETDVTIDQ---LNGRLDGLYVILPPL 104

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRHRGYDRYRESQVVQLAYTHEL 209
            +  I+       S      +     L      L   +  H          + ++A  +++
Sbjct: 105  A-EINDLLLQGKSADISDLISKLMDLGLTKQDLKFGVDYHSS--DALIDMLSKVAADNQV 161

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLP 268
             L+A     +L+ EDY    VL A+A  T +S   +  +    ++L+ +  M   +  L 
Sbjct: 162  QLIADAPVQYLNAEDYFPMQVLKAIAAGTKISNVAELSQQVGPYFLRPQDRMEKEYQRLH 221

Query: 269  --EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
               AL+   E+   C   ++   P LP+F          E    LR     GL  RL   
Sbjct: 222  LNAALQAIDEVVSNCHVEIKKKQPKLPQFETPN----DMEPGQYLRQLCEKGLSKRLEAA 277

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
             I+       YR RLD EL+VI  M F  YFLIV D I +A +  I  GPGRGS AGS+ 
Sbjct: 278  HISDDAP---YRHRLDRELSVIHSMGFDDYFLIVWDVINFAHQARIITGPGRGSAAGSLV 334

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L ITD+DP+++ LLFERFLNP+R+ MPD D+D   D+RD+VI+YV  KYGH+RVAQI
Sbjct: 335  AYTLFITDVDPIKYELLFERFLNPERVQMPDIDLDIPDDKRDDVIQYVHQKYGHQRVAQI 394

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
            ITFG+L AK A RDVGR   +  +Q D   K IP+   H     A  +  + +       
Sbjct: 395  ITFGTLAAKQATRDVGRVFGLNPNQQDVWSKAIPSAF-HVTLADAYHNSQQLKNLVADSD 453

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
                L + +Q LEGL RH STHAAG+V+ D  L  LVP+  D    L +TQ++  ++E  
Sbjct: 454  LNKSLFKTAQVLEGLPRHYSTHAAGLVLSDNLLVDLVPLQ-DGNDGLLMTQYSKDYVESV 512

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K DFLGL+ LT+L  +L  + Q  G K+++S IP DD +T  L     T G+FQ ES
Sbjct: 513  GLLKIDFLGLRNLTILADALAEIKQATGQKINISQIPLDDKKTLKLFANGDTTGVFQFES 572

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
            SG+R  L  + P+  ED+  + +LYRPGP++NI     RK+ +E +      ++ +LK T
Sbjct: 573  SGIRSVLRRLHPEQFEDVALVNALYRPGPMENIDEVVKRKSHQEALTYPDQSLEDILKST 632

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             GVI+YQEQVM +A  ++G+SL +AD+LRRAM KK  + MD+ K  F++GA K G  K +
Sbjct: 633  YGVIVYQEQVMLVASKMAGFSLGQADILRRAMSKKKLKVMDRMKSLFLTGAEKKGHPKQV 692

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A  +F+ + KFA+YGFNKSHA AY+ ++Y+ A++K ++P EF  A +    ++  K+K++
Sbjct: 693  AEKVFDYIEKFANYGFNKSHAVAYSKMAYELAYLKVYFPGEFHVALLNSVQNSSVKMKEY 752

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDS 864
              DA+   ++++ P +N    DF   D +I + LA+IKGV     + I+ +   +  + S
Sbjct: 753  LSDAKSMGVKVVAPDINKSRADFSYQDQQIVFGLASIKGVRHDMVQDILNDRDQNGRYKS 812

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              +  +R+  K     ++ +L+++GALD F Y+R +L+ +        Q      +    
Sbjct: 813  FPNLLARLSDKYRKPDLINALIYSGALDGFSYNRSELISAAPEFISSIQL-----SGDSM 867

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            ++F       + + T+ +        R E E   LG Y SGHP++ +  + +++  K   
Sbjct: 868  SLF------KALEPTVPRKPEMPLMQRLEKENDYLGAYLSGHPVERFTALRKRLNAKLTN 921

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + V  +  N + L   +   +  +T+ G ++ +   S+   E     FP
Sbjct: 922  QLVVGM--NQVVLILYITKVKIIRTKTGKQMAFFDGSDEVGEMSVTVFP 968


>gi|330399560|ref|YP_004030658.1| DNA polymerase III subunit alpha [Burkholderia rhizoxinica HKI 454]
 gi|312170297|emb|CBW77336.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia
            rhizoxinica HKI 454]
          Length = 1091

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/1050 (26%), Positives = 448/1050 (42%), Gaps = 73/1050 (6%)

Query: 1    LTQYLEKS-----PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
            L   +EK      P +  LQ  S++S L GA     ++ + A     A+AITD  ++   
Sbjct: 44   LANPMEKPANASLPEYAELQCASNFSFLYGASHPEELVARAAQLGYTALAITDECSVAGV 103

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +    +A   G+  I+G Q  +            +       ++  L    +GY  L E 
Sbjct: 104  VRAHLEAKKVGLPLIVGAQFRLA-----------QGQAAPAMALSALAMNRDGYGNLCEF 152

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLI--MLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            ++   +    K + R+    L            L+                   E +L  
Sbjct: 153  ITLGRMRGD-KGTYRLSCDDLAHADAVDRHGCALSHCL------VILHPDYPAHEAQLTW 205

Query: 174  FKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
                FG R+ V L  H +  D      V ++A  H + +VAT              DV+ 
Sbjct: 206  AAPHFGSRIAVALTLHAQAMDDLHRGVVQRVAARHGVRVVATGAVRMHVRSRKPLQDVVT 265

Query: 233  AVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
            A+     VS            +L+ R  + +++    + LE TV +AR+C+F L      
Sbjct: 266  AIRLGQSVSACGYHLAPNAQQHLRARLRLANVYPR--DTLEATVHLARQCTFSLDELRYE 323

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             P  +              LR +A  G   R   G           +Q+L+ EL +IA +
Sbjct: 324  YPEELVPNG----HSATTYLREQAYLGAHRRFPNGI------PMTVQQQLEHELALIATL 373

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            ++  YFL V D + +A+   I +  GRGS A S   Y L IT++DP R +LLFERF++ +
Sbjct: 374  RYEPYFLTVYDIVHFARSQGI-LCQGRGSAANSAVCYCLGITEVDPARSNLLFERFVSRE 432

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD DIDF   RR+EVI+Y+  KYG ER A      + + ++ALRD G+AL +    
Sbjct: 433  RNEPPDIDIDFEHQRREEVIQYLYRKYGRERAALTAAVTTYRPRSALRDAGKALGIDPLI 492

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            VDR+ K           L+   D           P +++   ++  L G  RH S H+ G
Sbjct: 493  VDRVAKSHQWFDTSAQLLKRFED----AGLDTCAPIIEQWATLAATLLGFPRHLSQHSGG 548

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA- 590
             VI    LS+LVP+      D  V Q++   I+  GL+K D L L  L++++++L  +A 
Sbjct: 549  FVISRGKLSRLVPIESAAMPDRSVIQWDKNDIDALGLLKIDILALGMLSVIRRALALVAH 608

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            QRG   +L  IP +D  TY +++   T+G+FQ+ES      L  ++P C  D++  V++ 
Sbjct: 609  QRGEPFELHDIPAEDAATYEMISRADTVGVFQIESRAQMSMLPRLRPRCFYDLVIEVAIV 668

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+   +   Y  R+ G E +      +   L  T GV I+QEQVMQ+A L +G++  
Sbjct: 669  RPGPVQGGMVHPYLRRREGVEPVTYPSEAMRTALARTLGVPIFQEQVMQVAMLAAGFTAG 728

Query: 709  EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EAD LRRAM   + +  +++  ER + G    G  +  A +IF  +  F +YGF +SHAA
Sbjct: 729  EADQLRRAMAAWRSQGGLEQYYERIVHGMVTRGYDRAFAESIFAQIQGFGEYGFPESHAA 788

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++A++ Y +AW+K H P  FL A +  +        +  QDAR+  ++++P  V     D
Sbjct: 789  SFALLVYVSAWLKCHAPAAFLCALLNSQPMGFYTPSQLVQDARRHGVKVLPVDVTISDWD 848

Query: 828  FKVGDNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
              +  +     +   L+ I+G+    A  I  A A +PF  + D   R    +  R +  
Sbjct: 849  STLQGHSLEAPVRLGLSLIRGLAEDAAARIELARAVRPFADVTDLARRAQLTR--RDLQA 906

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
                       G  R  L  +L  +                          SD      F
Sbjct: 907  LASANALASLAGNRRAALWHALAAVPDKDLLRAA-----------------SDDDVTPAF 949

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
            +         ++ R LG     HPL + +  L +  +           G   R   +V  
Sbjct: 950  APLTPGQAIAHDYRALGLTLERHPLALLRAQLLQRRLLPAVVLQRYRDGQLARACGLVTV 1009

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +Q+  T KG  + +VT  + +       +P
Sbjct: 1010 RQRPGTAKG--VLFVTLEDESGHTNVIIWP 1037


>gi|307311805|ref|ZP_07591444.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
 gi|306899546|gb|EFN30176.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
          Length = 1087

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/1047 (26%), Positives = 466/1047 (44%), Gaps = 88/1047 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQV + +S L  A S   +          A+ + D N+L   +   + + A G++ 
Sbjct: 2    RYAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC                +       SI++  +    Y RL  L++    L +G+   
Sbjct: 62   VVGC----------------RLDLQDGMSILVYPTDRAAYSRLTRLLT----LGKGRGGK 101

Query: 130  RICLSWLQE--IGTEGLI-MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              C+    +  +  EGLI +L    +  +                    ++FGDR YV+L
Sbjct: 102  ANCIIHFDDVALYAEGLIGILVPDLADEVCAVQLRK-----------IAEVFGDRAYVSL 150

Query: 187  Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD- 244
              R R  D+ +  ++  LA  H +  + TN+ LF      +  DV+  +     +     
Sbjct: 151  CLRRRPNDQLQLHELTNLAVKHRVKTIVTNDVLFHEHGRRQLQDVVTCIRTGMTIDDVGF 210

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  D YLK   EM  +F   PEAL  T+EI  RC F L+      P    +E   + 
Sbjct: 211  ERERHADRYLKPPEEMARLFPAYPEALARTMEIVERCRFSLEELVYQYP----EEALILG 266

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L++    G+  R  +G            + +  EL +I  MK++ YFL V   +
Sbjct: 267  MTAQQSLQHYTWEGVRARYPEGLPTH------VEKTIRHELALIETMKYAPYFLTVFSIV 320

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  
Sbjct: 321  RYARSQGI-LCQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEH 379

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI+++   YGH++ A   T    +AK A+RDVG+AL +P   +  L   I     
Sbjct: 380  ERREEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALDLPEDLIRTLSSGIW---- 435

Query: 485  HPVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
               S      + + RE  L +P   RL   L ++Q+L G  RH S H  G V+    L  
Sbjct: 436  ---SWSETVGERQVRELGL-NPDDRRLTLTLRLAQQLMGAPRHLSQHPGGFVLTHDRLDD 491

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600
            LVP+     +D  V +++   IE    +K D L L  LT + K+   +   +   +DL+ 
Sbjct: 492  LVPIEPATMADRQVIEWDKDDIEALKFMKVDVLALGMLTCMAKAFALISEHKHEDIDLAT 551

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            IP +D  TY ++    TLG FQ+ES      L  M+P    D++  V++ RPGPI  D +
Sbjct: 552  IPQEDRATYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAIVRPGPIQGDMV 611

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R+ GKEK+    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M 
Sbjct: 612  HPYLRRREGKEKVEYPTPELEAVLHKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMA 671

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K    + + K++ ++G  +NG +K  A   F  L  F  YGF +SHAA++A+I+Y + 
Sbjct: 672  TFKFTGGVSRFKDKLVNGMIRNGYTKEFAEKTFSQLEGFGSYGFPESHAASFALIAYASN 731

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------G 831
            ++K ++P  F AA +  +        +  +DAR+  +++ P  +N    D  +      G
Sbjct: 732  YIKCYFPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSRWDCMLEPIDGSG 791

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             + +   +  ++G+ T  A  I+ A AD+PF S++D   R     +    L  L  A A 
Sbjct: 792  GHAVRLGMRLVRGLATADAARIVAARADEPFTSVDDMWRR---SGVPVASLVELAEADAF 848

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV-----E 946
                      L SL   ++ A W  K   ++   +F       +  I  ++         
Sbjct: 849  ----------LPSLSLERRDALWAIKALRDEPLPLFTAAADREARAIAEQEEPEVELRQM 898

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                    +    G     HPL   +  L K  I    +++    G  +  A +V+ +Q+
Sbjct: 899  TDGQNVVEDYSHTGLTLREHPLRFMRDDLAKRRIVTCAQAMTAHDGQWLMAAGLVLVRQR 958

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + KG  + ++T  +         +P
Sbjct: 959  PGSAKG--VMFITIEDETGIANIVVWP 983


>gi|301330018|ref|ZP_07222702.1| DNA polymerase III, alpha subunit [Escherichia coli MS 78-1]
 gi|300843929|gb|EFK71689.1| DNA polymerase III, alpha subunit [Escherichia coli MS 78-1]
          Length = 742

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/759 (42%), Positives = 468/759 (61%), Gaps = 34/759 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNK
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNK 742


>gi|67459636|ref|YP_247260.1| DNA polymerase III subunit alpha [Rickettsia felis URRWXCal2]
 gi|75535968|sp|Q4UK40|DPO3A_RICFE RecName: Full=DNA polymerase III subunit alpha
 gi|67005169|gb|AAY62095.1| DNA polymerase III alpha chain [Rickettsia felis URRWXCal2]
          Length = 1207

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/840 (44%), Positives = 529/840 (62%), Gaps = 36/840 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P F+HL+  SSYS LE AL++  +++  ++++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3   PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALYAVKKGLQ 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PI G  L+I            K        I+L+     GY+ L++L S  +  +  K  
Sbjct: 63  PIHGVILNI------------KYDIDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKLC 110

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I    L E   EGLI L   + G + +     S + A       + + GDR Y  + R
Sbjct: 111 DHIDFEDLIEY-QEGLIALCCYTDGIVGKCLLARSEEQAMLFARKLQDILGDRFYFEIMR 169

Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H    +++ E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170 HDLPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKTMHDAHDVLLCISAGVTKEYPDRKT 229

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           V+ + Y ++  EM+ +FSDLP A++NTV +  RC F    + P+LP F  K+       E
Sbjct: 230 VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATKDI-----SE 284

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
            + +R  A  GL  RLA    ++    Q       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285 TDLIRKDAKEGLLARLATKFKSENIPLQNQEELKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
           +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345 SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405 DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481 NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
               +PVSL QA+ +      A   +           +  +L+ S  LEGL+RH+STHAA
Sbjct: 465 FSAVNPVSLEQAMREVPELANAAKGNGLYNLEGEAELIKLVLDTSLILEGLHRHSSTHAA 524

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           GIVI    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525 GIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
           ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585 EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645 RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQILAGYTLGAA 704

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
           D+LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAAAY 
Sbjct: 705 DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAAAYG 764

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
           VISYQTA++K +YP EFL A + LE++N +KI  F Q+A+   I+I+ P++N     F V
Sbjct: 765 VISYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDSGIKIIAPNINISEGYFSV 824



 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 107/253 (42%), Gaps = 16/253 (6%)

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP E +   +  E   ++         R     I     +     +    + I ++L AI
Sbjct: 848  YP-EKVKTVLNHESMKMDS--------RFCGNDIKGSRNDIEDTGYDKEKSTIIFALGAI 898

Query: 843  KGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGV     + +  E  A   F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QL
Sbjct: 899  KGVTPNFGKLVTDERKARGAFKSITDFIERLPLKSINSKLLENLIKSGCFDELHDNRLQL 958

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
              S+  +  Y+      + +   ++   +  + S  I +     +N+++ F  E   +G 
Sbjct: 959  FSSISKLLAYSASYHAEQESNQFSL--IKVSSLSPNILIASDYADNNTLAF-YEFESMGL 1015

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESV-ATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            + S HPL  Y+ I  ++ I    +       G N + LA ++  K  + + +G R   + 
Sbjct: 1016 FISNHPLTQYQEIFSRLNILNTADLHNNLPDGTNRVNLAGVIQKKDSRMSARG-RFVTLV 1074

Query: 1020 FSEPAKEYEANFF 1032
             S+P   +E + F
Sbjct: 1075 LSDPENIFELSIF 1087


>gi|302524129|ref|ZP_07276471.1| error-prone DNA polymerase [Streptomyces sp. AA4]
 gi|302433024|gb|EFL04840.1| error-prone DNA polymerase [Streptomyces sp. AA4]
          Length = 1053

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1045 (26%), Positives = 471/1045 (45%), Gaps = 69/1045 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  L  HS++S L+GA     ++++ A  +  AIA+TD + ++  + F++ A   G+  
Sbjct: 2    AYAELHCHSNFSFLDGASHPEELVEEAARLRLDAIALTDHDGMYGVVRFAEAAKELGVAT 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG---- 125
            + G +L   +        Q     P    ++LL   ++GY+ L   ++   L        
Sbjct: 62   VFGTELSFGLS-----APQNGVADPEGEHLLLLARGSDGYRSLCRAITAGQLRGHDEKDA 116

Query: 126  ----KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD- 180
                K      LS + E       +LTG   G +  A        A   L     LFG  
Sbjct: 117  ERAEKGRPIYDLSAVAEEVVGKCAVLTGCRKGSVRSALVREGPDAAFAELRRLVDLFGRT 176

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            ++YV L  H    D      + ++A   +LP VAT  + +   E     D L A+     
Sbjct: 177  QVYVELIDHGQPLDSTHNDLLAEMADELKLPTVATTAAHYARPERGRLADALAAIRARRG 236

Query: 240  VSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +   +         +L++ +EM  IF   P A++ +  +   C+F L++ AP LP F   
Sbjct: 237  IDDLEGWLPGDAAAFLRSGNEMAEIFQRYPGAVQRSALLGMECAFPLKLLAPKLPPFDVP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            + +     E   LR     G + R       K   A+   +++  E+ VI  + F GYFL
Sbjct: 297  KGE----TETTHLRALVREGFKERYR--GKPKEAQAE---KQIKHEMEVIESLGFPGYFL 347

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV D +++ ++ +I +  GRGS A S   YAL IT +DP++++LLFERFL PDR   PD 
Sbjct: 348  IVWDIVRFCREQDI-LCQGRGSAANSAVCYALGITKVDPIKYNLLFERFLAPDRDGYPDI 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+D   DRR+E I+YV  K+G    AQ+    + +A++A+RD  RAL     Q D   K 
Sbjct: 407  DLDIESDRREEAIQYVYGKHGRLNAAQVANVITYRARSAIRDAARALGYSPGQQDAWSKQ 466

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            I    A   +           E        + +++++  LE   RH   H+ G+V+   P
Sbjct: 467  IDRWGALRST-----------EKDHDHDIPNDVVQLAFALEDFPRHLGIHSGGMVMCREP 515

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            +SQ+ P+      +  V Q+  +     GL+KFD LGL  L+ L   LD + + +  ++D
Sbjct: 516  VSQVCPVEWARMENRSVLQWEKEDCAAVGLVKFDLLGLGMLSALHYMLDLVKEYKDEEID 575

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +   D   Y +L     +G+FQ+ES      L  ++P    D+   V+L RPGPI  
Sbjct: 576  LAELDLADENIYEMLCHADAIGVFQVESRAQLATLPRLRPKEFYDLAVEVALIRPGPIQG 635

Query: 658  I--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
                 Y  RK G+EK    HPL+   LK+T GV ++QEQ+MQIA  ++ ++ +EAD LR 
Sbjct: 636  GSVHPYIRRKQGREKWEYDHPLLKNALKKTLGVPLFQEQMMQIALDVAKFTPAEADQLRH 695

Query: 716  AM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AM  K+ + +M++  +RF+ GA  NG+   +A  IF+ L  FA++GF +SHA ++A + +
Sbjct: 696  AMGSKRSQRKMERLHKRFLDGAVANGVDAELAEKIFQKLKAFANFGFPESHALSFAHLVF 755

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-- 832
             +A+ K ++P  F A  +  +       +    DAR+  +  + P +N       +    
Sbjct: 756  ASAYFKHYHPDAFCAGLLRAQPMGFYSPQSLVADARRHGVTTLGPDINRSLPHATLEALP 815

Query: 833  -----NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                 + +   L+ ++ +G T A  I+    A+  ++S+ D   RV         LE+L 
Sbjct: 816  DNGKLHAVRGGLSTVRMIGETLAEEIVAERQANGRYESMSDLGRRVRLT---TPQLEALA 872

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGA   FG  R Q L S       A  V ++R  K         G   D   L      
Sbjct: 873  TAGAFSAFGPDRRQALWS-------AGAVAQDRPEKLPG-----TGVGVDAPMLPGMDGL 920

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            + +     +    G     +P +  +  L  +G+   ++ +    G  + +   V  +Q+
Sbjct: 921  DLA---AADVWATGISPDSYPTEFIRDRLDALGVVTADKLLDREDGERVLVGGAVTHRQR 977

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANF 1031
              T  G  + ++   +         
Sbjct: 978  PATAGG--VTFLNLEDETGMVNVIC 1000


>gi|242242967|ref|ZP_04797412.1| DNA polymerase III alpha chain [Staphylococcus epidermidis W23144]
 gi|242233568|gb|EES35880.1| DNA polymerase III alpha chain [Staphylococcus epidermidis W23144]
          Length = 1065

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/1024 (31%), Positives = 536/1024 (52%), Gaps = 81/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI 
Sbjct: 3    AHLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +        T             V+L    +G + L +L S + +    K    +
Sbjct: 63   GMTIYLTDGLYTIET-------------VVLAKNNQGLKSLYQLSSAIMM----KNKEEV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             + WL++     +I+        +      ++ +  ++            LY+N   +  
Sbjct: 106  PIEWLKKYDKHLIIIF---KEAELSHKQIIDAFEGKKE------------LYLNHNSNNT 150

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                R               V   ++ +L+E+D E    L A+  +T +      + T D
Sbjct: 151  LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKL-DLIHEKETLD 194

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +  +  E+ ++ +   + + NT EI + C   +  H  +LP+F+    +      ++ L
Sbjct: 195  EHFPSMEELQTL-NLSEDMIANTNEIEKLCQAEIAYHQSLLPQFVTPNGE----TSKDYL 249

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                +  L+            + + Y  RL  E  +I  M F  YFLIV+D I +AK + 
Sbjct: 250  WTILIHRLQK--------WELNDKTYFDRLKHEYKIITDMGFEDYFLIVSDLIHFAKTHE 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDIDIDFEDTRREKVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     ++L+ 
Sbjct: 362  KYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKLIPHKLG--ITLEE 419

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                  F+     +   +R  E+S+KLEGL RH STHAAGI+I D+PL +  P+      
Sbjct: 420  AYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQPLFKFAPL--TTGD 477

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  IP+DD + + 
Sbjct: 478  TGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINIDIEAIPYDDKKVFD 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++   +
Sbjct: 538  LLSNGDTTGIFQLESEGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHNPNQ 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+MQIA  ++G+S  EAD+LRRAM KK +  ++ +++
Sbjct: 598  VAYLHPDLEPILKNTYGVIIYQEQIMQIASQVAGFSYGEADILRRAMSKKNRAILESERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A 
Sbjct: 658  HFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K      +A+   I I+PP++N     +K  +  IY SL  IKG+G  + 
Sbjct: 718  ILSNVIGSEKKTAAIIDEAKHQRISILPPNINQSHWYYKASNKGIYLSLGTIKGIGYQSV 777

Query: 851  RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+ E   + P+    DF  R+  +  NR++LESL+  GA D FG +R  LLQ++D + 
Sbjct: 778  KLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGKTRATLLQAIDQVL 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                    N   + +++        + K + E+       +  + E+  LGFY S HP++
Sbjct: 838  DL------NSDVEQDDMLFD---LLTPKQSYEEKEELPDQLLSDYEKEYLGFYISKHPVE 888

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                   K    G  +         I +       +Q +T+ G  + +VT ++     + 
Sbjct: 889  ---KKFEKKQYLGIFQLSNGSHYQPILV--QFDHIKQIRTKNGQNMAFVTMNDGRTMMDG 943

Query: 1030 NFFP 1033
              FP
Sbjct: 944  VIFP 947


>gi|319401016|gb|EFV89235.1| DNA polymerase III subunit alpha [Staphylococcus epidermidis FRI909]
          Length = 1065

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/1024 (31%), Positives = 535/1024 (52%), Gaps = 81/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI 
Sbjct: 3    AHLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +        T             V+L    +G + L +L S + +    K    +
Sbjct: 63   GMTIYLTDGLYTIET-------------VVLAKNNQGLKSLYQLSSAIMM----KNKEEV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             + WL++     +I+        +      ++ +  ++            LY+N   +  
Sbjct: 106  PIEWLKKYDKHLIIIF---KEAELSHKQIIDAFEGKKE------------LYLNHNSNNT 150

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                R               V   ++ +L+E+D E    L A+  +T +      + T D
Sbjct: 151  LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKL-DLIHEKETLD 194

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +  +  E+ ++ +   + + NT EI + C   +  H  +LP+F+    +      ++ L
Sbjct: 195  EHFPSIEELQTL-NLSEDMIANTNEIEKLCQAEIAYHQSLLPQFVTPNGE----TSKDYL 249

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                +  L+            + + Y  RL  E  +I  M F  YFLIV+D I +AK + 
Sbjct: 250  WTILIHRLQK--------WELNDKTYFDRLKHEYKIITDMGFEDYFLIVSDLIHFAKTHE 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDIDIDFEDTRREKVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     ++L+ 
Sbjct: 362  KYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKLIPHKLG--ITLEE 419

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                  F+     +   +R  E+S+KLEGL RH STHAAGI+I D+PL +  P+      
Sbjct: 420  AYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQPLFKFAPL--TTGD 477

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  IP+DD + + 
Sbjct: 478  TGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINIDIEAIPYDDKKVFD 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++   +
Sbjct: 538  LLSNGDTTGIFQLESEGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHNPNQ 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+MQIA  ++ +S  EAD+LRRAM KK +  ++ +++
Sbjct: 598  VAYLHPDLEPILKNTYGVIIYQEQIMQIASQVASFSYGEADILRRAMSKKNRAILESERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A 
Sbjct: 658  HFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K      +A+   I I+PP++N     +K  +  IY SL  IKG+G  + 
Sbjct: 718  ILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYLSLGTIKGIGYQSV 777

Query: 851  RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+ E   + P+    DF  R+  +  NR++LESL+  GA D FG +R  LLQ++D + 
Sbjct: 778  KLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGKTRATLLQAIDQVL 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                    N   + +++        + K + E+       +  + E+  LGFY S HP++
Sbjct: 838  DL------NSDVEQDDMLFD---LLTPKQSYEEKEELPDQLLSDYEKEYLGFYISKHPVE 888

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                   K    G  +         I +       +Q +T+ G  + +VT ++     + 
Sbjct: 889  ---KKFEKKQYLGIFQLSNGSHYQPILV--QFDHIKQIRTKNGQNMAFVTMNDGRTMMDG 943

Query: 1030 NFFP 1033
              FP
Sbjct: 944  VIFP 947


>gi|296138661|ref|YP_003645904.1| DNA polymerase III subunit alpha [Tsukamurella paurometabola DSM
            20162]
 gi|296026795|gb|ADG77565.1| DNA polymerase III, alpha subunit [Tsukamurella paurometabola DSM
            20162]
          Length = 1093

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1033 (27%), Positives = 473/1033 (45%), Gaps = 60/1033 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  H+++S L+GA     ++++  A    A+A+TD N  +  + F++ A   G+  
Sbjct: 57   PYAELHAHTAFSFLDGAAQPEEMVEQAHALGLTALAVTDHNGFYGVVRFAEAALGLGVPT 116

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + G +L       L+   +  T  P    +++L    EGY+RL   ++  ++    K  +
Sbjct: 117  VFGAEL-----SLLRDAERTGTADPDGEHLLVLARGQEGYRRLSRAMAEAHMEAGEKGKL 171

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R     L E       +LTG   G + R         A   L      F  DR+ + L  
Sbjct: 172  RFHPDRLAEWSEGHWHILTGCRKGAVRRGLDAAGPDGAAGALAHLLDRFGPDRVSMELTV 231

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
            H    D  R   +  +A    +  VAT  + F   +       L A+     + + D   
Sbjct: 232  HGVPEDDERNHLLAGVAARMGVGTVATTGAHFARPDQRRLAATLAAIRARRSLDELDGWL 291

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  +L++  EM  +  + P A+   VE+A  C+F L++ AP LP F           
Sbjct: 292  PAAGGAHLRSGDEMALLLPEHPGAIAGAVELAAECAFSLRLIAPNLPPFDVPAG----HT 347

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E   LR     G   R          + + YR +++ ELNVI  + F GYFLIV   + +
Sbjct: 348  EATWLRELTRRGALDRYG----PPESNPKAYR-QIEHELNVIETLTFPGYFLIVHSIVSF 402

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             ++++I +  GRGS A S   +AL IT +DP+R  LLFERFL P+R   PD D+D   DR
Sbjct: 403  CRESDI-LCQGRGSAANSAVCFALGITAVDPVRNGLLFERFLAPERDGPPDIDVDIESDR 461

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+E I++V   YG    AQ+    + + ++A+RD  RAL     Q D   K I +     
Sbjct: 462  REEAIQFVYRTYGRAYAAQVANVITYRGRSAVRDTARALGYSQGQQDAWSKQISSYG--- 518

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                       +R   + D   +R+++++ ++  L RH   H+ G+VI DRP++ + P  
Sbjct: 519  -----------WRNDPVPDGVPERVIDLATQIADLPRHLGIHSGGMVICDRPIADVCPTE 567

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                 D  V Q++      AGL+KFD LGL  L+ L  + D L +   ++VD + +   D
Sbjct: 568  WARMQDRSVLQWDKDDCAAAGLVKFDLLGLGMLSALHYAQDLLKEHKGIEVDFAQLDLTD 627

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
               Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI       Y  
Sbjct: 628  DTVYAMLRRADSVGVFQVESRAQMATLPRLKPRTFYDLVVEVALIRPGPIQGGSVHPYIR 687

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R+NG+E+    HP +   L+ T GV ++QEQ+MQ+A  ++ ++ +EAD LRRAM  K+  
Sbjct: 688  RRNGQEEPRVEHPSMWKTLERTLGVPLFQEQLMQLAVDVADFTPAEADQLRRAMGSKRST 747

Query: 723  EEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            E+M++ +ERF  GA + +GI   +A  IFE LA FA++GF +SH+ ++A + + ++W K 
Sbjct: 748  EKMEQLRERFYRGAKQLHGIEGELADRIFEKLAAFANFGFPESHSQSFASLVFYSSWFKC 807

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC--VDFKVGDNRIYYSL 839
            ++P  F AA +  +       +    DAR+  + +  P +N      + +     +   L
Sbjct: 808  YHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDLNISLPWANLENAGMEVRLGL 867

Query: 840  AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            AAI+ +G   A  I+ E  A   +  L D  SRV+         E+L  +GALDCFG  R
Sbjct: 868  AAIRTIGDELAERIVAEREAGGIYAGLTDLTSRVELT---VAQAEALATSGALDCFGRDR 924

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             Q L         A    + R ++          T     TL   S    +     +   
Sbjct: 925  RQALW-------EAGAAARERPDRLPG-----TATAGAPPTLPGMSE---TELAAADVWA 969

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
                   +P +  +P L ++G+   ++ ++   G+ + +   V  +Q+  T  G  + ++
Sbjct: 970  TSVTVGKYPTEFLRPKLDELGVIPADQLLSLPDGDRVLVGGAVTHRQRPATAGG--VTFI 1027

Query: 1019 TFSEPAKEYEANF 1031
               +         
Sbjct: 1028 NLEDETGMVNVVC 1040


>gi|227524451|ref|ZP_03954500.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
 gi|227088410|gb|EEI23722.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
          Length = 1093

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/1009 (33%), Positives = 520/1009 (51%), Gaps = 48/1009 (4%)

Query: 32   ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91
            ++ +       A+A+TD N ++ A+EF      AGIQPII           L +   G  
Sbjct: 1    MVTEAKKRGYKALAMTDINVMYGAVEFYDTCIDAGIQPII----------GLTLNLPGVM 50

Query: 92   PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151
                  SI+LL     GYQ L+++ +   L   G+  V I          +GL ++    
Sbjct: 51   LSENNYSILLLAKNQTGYQNLLKIST---LKSSGETDVMIDQ---LNGRLDGLYVILPPF 104

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRHRGYDRYRESQVVQLAYTHEL 209
            +  I+       S    + +     L      L   +  H          + ++A  +++
Sbjct: 105  A-EINDLLLQGKSADISELISKLMDLGLTKQDLKFGVDYHSS--DTLIDMLSKVAADNQV 161

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLP 268
             L+A     +L+ EDY    VL A+A  T +S   +  +    ++L+ + +M   +  L 
Sbjct: 162  QLIADAPVQYLNAEDYFPMQVLKAIAAGTKISNVAELSQQVGPYFLRPQDQMEKEYQRLH 221

Query: 269  --EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
               AL+   E+   C   ++   P LP+F          E    LR     GL  RL   
Sbjct: 222  LNAALQAIDEVVSNCHVEIKKKQPKLPQFETPN----DMEPGQYLRQLCEKGLSKRLEAA 277

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
             I+       YR RLD EL+VI  M F  YFLIV D I +A +  I  GPGRGS AGS+ 
Sbjct: 278  HISDDAP---YRHRLDRELSVIHSMGFDDYFLIVWDVINFAHQARIITGPGRGSAAGSLV 334

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L ITD+DP+++ LLFERFLNP+R+ MPD D+D   D+RD+VI+YV  KYGH+RVAQI
Sbjct: 335  AYTLFITDVDPIKYELLFERFLNPERVQMPDIDLDIPDDKRDDVIQYVHQKYGHQRVAQI 394

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
            ITFG+L AK A RDVGR   +  +Q D   K IP+   H     A  +  + +       
Sbjct: 395  ITFGTLAAKQATRDVGRVFGLNPNQQDVWSKAIPSAF-HVTLADAYHNSQQLKNLVADSD 453

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
                L + +Q LEGL RH STHAAG+V+ D  L  LVP+  D    L +TQ++  ++E  
Sbjct: 454  LNKSLFKTAQVLEGLPRHYSTHAAGLVLSDNLLVDLVPLQ-DGNDGLLMTQYSKDYVESV 512

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K DFLGL+ LT+L  +L  + Q  G K+++S IP DD +T  L     T G+FQ ES
Sbjct: 513  GLLKIDFLGLRNLTILADALAEIKQATGQKINISQIPLDDKKTLKLFANGETTGVFQFES 572

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
            SG+R  L  + P+  ED+  + +LYRPGP++NI     RK+ +E +      +  +LK T
Sbjct: 573  SGIRSVLRRLHPEQFEDVALVNALYRPGPMENIDEVVKRKSHQEALTYPDQSLKDILKST 632

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             GVI+YQEQVM +A  ++G+SL +AD+LRRAM KK  + MD+ K  F++GA K G  K +
Sbjct: 633  YGVIVYQEQVMLVASKMAGFSLGQADILRRAMSKKKLKVMDRMKSLFLTGAEKRGHPKQV 692

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A  +F+ + KFA+YGFNKSHA AY+ ++Y+ A++K ++P EF  A +    ++  K+K++
Sbjct: 693  AEKVFDYIEKFANYGFNKSHAVAYSKMAYELAYLKVYFPGEFHVALLNSVQNSSVKMKEY 752

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDS 864
              DA+   ++++ P +N    DF   D +I + LA+IKGV     + I+ +   +  + S
Sbjct: 753  LSDAKSMGVKVVAPDINKSRADFSYQDQQIVFGLASIKGVRHDMVQDILNDRDQNGRYKS 812

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              +  +R+  K     ++ +L+++GALD F Y+R +L+ +        Q      +    
Sbjct: 813  FPNLLARLSDKYRKPDLINALIYSGALDGFSYNRSELISAAPEFISSIQL-----SGDSM 867

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            ++F       + + T+ +        R E E   LG Y SGHP++ +  + +++  K   
Sbjct: 868  SLF------KALEPTVPRKPEMPLMQRLEKENDYLGAYLSGHPVERFTALRKRLDAKLTN 921

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + V  +  N + L   +   +  +T+ G ++ +   S+   E     FP
Sbjct: 922  QLVVGM--NQVVLILYITKVKIIRTKTGKQMAFFDGSDEVGEMSVTVFP 968


>gi|73662373|ref|YP_301154.1| DNA polymerase III alpha chain [Staphylococcus saprophyticus subsp.
            saprophyticus ATCC 15305]
 gi|72494888|dbj|BAE18209.1| DNA polymerase III alpha chain [Staphylococcus saprophyticus subsp.
            saprophyticus ATCC 15305]
          Length = 1067

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/1024 (32%), Positives = 537/1024 (52%), Gaps = 78/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H++Y LL  ++ + +++ K A +   A+AITDTN L+   +F     AA I PI 
Sbjct: 3    AHLNIHTTYDLLNSSIRIKDVVAKAAQEGYTALAITDTNVLYGLPQFYDACIAANIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  +++    +   T             ++L     G + L +L S + +    K+ V  
Sbjct: 63   GMTINLTDGLSELET-------------IVLAQNNLGLKDLFKLSSAIKM----KEKVET 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             + WL++  +  +I+             F N ++  E  +  F +     ++VN   H+ 
Sbjct: 106  PIEWLKKYESHFVII-------------FKNVTESHEAIISNFSEHA--HVFVN---HKS 147

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                          T +LP+V   ++ +L+ +D +    + A+  ++ +          +
Sbjct: 148  K------------VTFDLPIVWAQSTRYLNSQDSDTLSAMAAIKENSKLDLVSEQTDYNE 195

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            H L +  E+  +  D     E T ++   C   +  H  +LP++        Q++ +  L
Sbjct: 196  H-LYSNVELQGLSIDDA-VWEQTNQLETLCQAEMIYHQSLLPKYKTPN----QQQSDAFL 249

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                   L     Q         + Y+ RL+ E  +I +M F  YFLIV+D IQ+AK N+
Sbjct: 250  WQLLADNL-----QQLNLPLNKKELYQTRLEHEYQIITKMGFEDYFLIVSDLIQYAKNND 304

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDP+ ++LLFERFLNP+R++MPD DIDF    RD+VI
Sbjct: 305  VLVGPGRGSAAGSLVSYLLNITTIDPIEYNLLFERFLNPERVTMPDIDIDFEDTHRDKVI 364

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ KYG   VA I+TFG L A+A  RDVGR +      ++ + KLIP+     +   A
Sbjct: 365  QYVQEKYGETHVAGIVTFGHLLARAVARDVGRIMGFEEITLNEISKLIPHKLGITLD-DA 423

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
             + +  F++    +   +R  +I +KLEGL RH STHAAGI+I D PL +  P+      
Sbjct: 424  YSQEP-FKQFVHRNHRHERWFDICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTLGDTG 482

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + +  +     + VD+  IPFDD   +H
Sbjct: 483  --LLTQWTMTESERIGLLKIDFLGLRNLSIIHQIVKQVKHDLNIDVDIEQIPFDDENVFH 540

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y +R++  EK
Sbjct: 541  LLSQGDTTGIFQLESDGIRNVLKKLQPEHFEDIVAVTSLYRPGPMEEIPTYISRRHHPEK 600

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++
Sbjct: 601  VQYLHPDLEPILKTTYGVIIYQEQIMQIASKFANFSYGEADILRRAMSKKNRAVLESERQ 660

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA KNG  + ++  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HY   F A 
Sbjct: 661  HFVNGALKNGYDENLSKQIFDLILKFADYGFARAHAVSYSKIAYIMSYLKVHYANYFYAN 720

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K  +   +A+   I I+PP++N     +K     IY S+ AIKGVG  + 
Sbjct: 721  ILSNAIGSEKKTAQMIDEAKHQKINILPPNINYSHWFYKATKKGIYLSIGAIKGVGYQSV 780

Query: 851  RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+E   A+  +    DF  R+  +   R++LESL+  GA D FG +R  LL ++D + 
Sbjct: 781  KLIVEERKANGFYKDFFDFTRRIPKRIKTRKLLESLILVGAFDTFGKNRATLLNAIDQVL 840

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 +E++                + K + E+       V  E E+  LGFY S HP++
Sbjct: 841  DDISDIEQD---------GFIFDVLTPKASYEEKEELPDHVLSEYEKEYLGFYVSTHPVE 891

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                  + +GI     +          +   V   ++ +T+ G  + +VT ++     + 
Sbjct: 892  KAFEQKQYLGIYKLANAQDNKP-----IFVQVDQFKRIRTKNGQNMAFVTLNDGINNLDG 946

Query: 1030 NFFP 1033
              FP
Sbjct: 947  VVFP 950


>gi|82703712|ref|YP_413278.1| DNA polymerase III, alpha subunit [Nitrosospira multiformis ATCC
            25196]
 gi|82411777|gb|ABB75886.1| error-prone DNA polymerase, DnaE-like protein [Nitrosospira
            multiformis ATCC 25196]
          Length = 1040

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/1042 (26%), Positives = 459/1042 (44%), Gaps = 74/1042 (7%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P +  L   S+++ L+GA     ++++ A     A+AITD  ++   +    +A   
Sbjct: 3    SSAPDYAELHCCSTFNFLKGASMPEELVERAATLGYSALAITDECSMAGVVRAHAEAKKT 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+  +IG +  ++                    +V L    EGY  L EL++        
Sbjct: 63   GLHLLIGSEFVLEDG----------------LRLVGLAMNREGYGNLCELITLARQRSA- 105

Query: 126  KQSVRICLSWLQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            K + RI  +  +       L  L       I R    + S V  + +   + LF  R ++
Sbjct: 106  KGTYRITRADFESCTDAPHLARLPDCLILLIPRRNQADGSWV--EDMRWVRSLFPGRGWI 163

Query: 185  NLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            +++R  H G +     ++   A T  +PLVA  +            D + A+  S  ++ 
Sbjct: 164  SVERLLHAG-EEVWFERIRHAAETIGMPLVAAGDVHMHDRAHKPLQDTMTAIRLSQPLAA 222

Query: 243  KDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                 +   + +L+ R E+  ++   PE L+ T+ IA RC+F L       P     E  
Sbjct: 223  CGYALQPNAEQHLRTRLELAQLYP--PELLQETLSIAARCTFSLDELRYEYP----DELT 276

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               +   + LR     G+  R  +GA  K       R++++ EL +IA +K+  YFL V 
Sbjct: 277  GTDETYTDYLRRMVENGMRWRFPKGASIK------VRKQIEHELKLIADLKYEPYFLTVF 330

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A+   I +  GRGS A S   Y L IT+IDP R +LLFERF++ +R   PD D+D
Sbjct: 331  DIVSFARSQGI-LCQGRGSAANSAVCYCLGITEIDPERSNLLFERFISRERNEPPDIDVD 389

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F   RR EVI+Y+  +YG +R A   T  + + ++A++DVG+AL +   ++ RL   +  
Sbjct: 390  FEHQRRGEVIQYIYRRYGRDRAAIAATVITYRTRSAVQDVGKALGLDIERIRRLSTSLAR 449

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                    + + ++          P + +L+ ++  L G  RH S H  G V+    L +
Sbjct: 450  WDKSSDINKRLGENG----FDPGSPVIRQLILLTTLLYGYPRHLSQHVGGFVLTRDKLCR 505

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600
            +VP+      +  + Q++   + + GL+K D L L  L+ + ++LD + ++RGV   +  
Sbjct: 506  IVPIENAAMPNRRIIQWDKDDLAEVGLMKVDVLALGMLSAIHRALDLISSRRGVPFQMQD 565

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            IP +D +TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 566  IPPEDEKTYDMICKADTIGVFQIESRAQMSMLPRLRPRTFYDLVVEVAIVRPGPIQGDMV 625

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R+  KEK       ++  L  T GV I+QEQVMQ+A L +G++  EAD LRR+M 
Sbjct: 626  HPYLRRRQDKEKPDYP-EGVETALARTYGVPIFQEQVMQVAMLAAGFTSGEADQLRRSMA 684

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K K  +    E+ I G +  G ++  A  IF  +  F +YGF +SHAA++A++ Y +A
Sbjct: 685  AWKRKGGLGAFHEKLIDGMTNRGYTREFAERIFRQIEGFGEYGFPESHAASFALLVYVSA 744

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H P  FL A +           +  QDA +  +QI P  V     +  + +     
Sbjct: 745  WLKCHEPAAFLCALLNSLPMGFYSASQLIQDAGRHGVQIKPVDVTISNWECILEEQEDKA 804

Query: 836  -----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                    L  +KG+G   A  I+EA     F++ +D  +R          L     A A
Sbjct: 805  LQPIVRLGLNRVKGMGLEAATRIVEAREIASFENPDDLANRASLNTAEVHALAR---ADA 861

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            L      R Q L S+ +                 ++  H       K TL          
Sbjct: 862  LRTLSGHRRQTLWSVASHIT------------QRDLMRHAPA----KETLPVIPAAPEGE 905

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +          HPL + +P L  M ++   E      G  +R   +V  +Q+  T 
Sbjct: 906  EIIADYASTRLTLRRHPLALLRPTLASMNLRSAMELSDYPTGRLVRTTGIVTCRQRPGTA 965

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G  + +VT  +         +
Sbjct: 966  SG--VMFVTLEDETGITNVVLW 985


>gi|254294846|ref|YP_003060869.1| DNA polymerase III subunit alpha [Hirschia baltica ATCC 49814]
 gi|254043377|gb|ACT60172.1| DNA polymerase III, alpha subunit [Hirschia baltica ATCC 49814]
          Length = 1096

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/1046 (25%), Positives = 449/1046 (42%), Gaps = 68/1046 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  L V +++S L GA      + +       AI I D N L   +     A   G+
Sbjct: 10   TPQYAELAVTTNFSFLRGASHAEEFVAQAKNLGLSAIGIADRNTLAGVVRAHVAAKEHGV 69

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + +IG                 +       S++   +    Y RL  L+S   +    K 
Sbjct: 70   RLLIGA----------------RLDLTDGISLLCYPTDRAAYGRLSHLLSDGKMR-APKG 112

Query: 128  SVRICLSWLQEIGTEGL-IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               I L  +       + I++       +         +     L         ++Y+ L
Sbjct: 113  ECHISLENVIAYADGQVFIVIPPMQPDAVFEEKLQILMEKFASSLEGSSPSPDKKIYMAL 172

Query: 187  -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              ++ G +R R +Q+  LA  + LPL+ATNN L+         D+L  +     +     
Sbjct: 173  IHQYGGKNRERLAQIAALASKYNLPLIATNNVLYHVSSRRPLQDILTCIREHVSLEDAGY 232

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  + +LK+ SEMV +F    EA+E+T +I   C F L       P           
Sbjct: 233  LLEPNAERHLKSPSEMVRLFHGFKEAIEHTQKIVEACQFSLDELRYEYPDEPVPRG---- 288

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K  +  L + A  G E R  +G   K       ++ L++EL +I  +  + YFL V D +
Sbjct: 289  KTPQEHLIDIAWKGAEWRYPEGVPEK------VQKSLNYELGLIGELHVAQYFLTVHDIV 342

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WA++  I +  GRGS A S   Y L IT +DP    LLF+RFL+ +R   PD D+DF  
Sbjct: 343  KWAREQEI-LCQGRGSAANSAVCYCLGITSVDPKVNDLLFDRFLSRERKEPPDIDVDFEH 401

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI+YV  +YG  R A   T  S + ++A+R+V +A  +       L K       
Sbjct: 402  ERREEVIQYVYERYGRHRAALTATVISYRPRSAVREVCKAFGLSEDVATALAKTNWGAYG 461

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +S +   +          + ++ R+L  +++L G  RH S H  G V+   PL + VP
Sbjct: 462  KTISDKQAGESG----LDPRNETIQRVLHFTRQLIGFPRHLSQHVGGFVLTQGPLVETVP 517

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPF 603
            +      +    +++   I+  G++K D L L  L+ ++K  D L   +G++ +L+ +P 
Sbjct: 518  IGNAAMDERTFIEWDKDDIDALGIMKVDILALGMLSCIRKCFDMLRLYKGLEYNLATVPQ 577

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            DD   Y +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y
Sbjct: 578  DDPAVYDMLCKADSVGVFQVESRAQMSMLPRLRPRVFYDLVIEVAIVRPGPIQGDMVHPY 637

Query: 662  NNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              R+   E +    P         ++ +LK T GV ++QEQ MQ+A   + ++  EA+ L
Sbjct: 638  LRRRKRIETVRYPSPAPEHGPPDELENILKRTLGVPLFQEQAMQVAIDAAKFTPDEANGL 697

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            R+AM   +    M   +++FI+G +  G     A   F  +  F DYGF +SHAA++A++
Sbjct: 698  RKAMATFRRNGTMGLYEDKFINGLTNRGYKPDFAQACFNQVKGFGDYGFPESHAASFALL 757

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF---- 828
             Y ++W+K H+P  F AA +  +        +  +DAR+ ++++ PP VN    D     
Sbjct: 758  VYVSSWLKCHHPEVFCAAILNSQPMGFYAPAQLVRDAREHDVEVRPPDVNYSDWDSLLEP 817

Query: 829  -KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             + G   +   L  I+G+  T  + +M+   D  +   E    R     L R  LE L  
Sbjct: 818  KEDGTFAVRLGLRQIEGLSETHIQTLMDRRQDGYYT-PEILRQRT---GLPRGALERLAA 873

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            A A    G  R + L ++    + A             +FA        +    K     
Sbjct: 874  ADAFRSMGLDRREALWAIRGQTQEA----------PSELFACSATKEQGREAEVKLPEMP 923

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             S     +          HP+   +    +MGI+  +E      G+ + +  +V+ +Q+ 
Sbjct: 924  MSEHVIQDYHATRLSLKAHPVSFLRERYSRMGIRTTKEIYELRSGSRVMVGGVVLVRQRP 983

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T  G  + +VT  +         +P
Sbjct: 984  GTASG--VVFVTLEDETGVANLIVWP 1007


>gi|315639541|ref|ZP_07894683.1| DNA-directed DNA polymerase III alpha subunit [Enterococcus italicus
            DSM 15952]
 gi|315484691|gb|EFU75145.1| DNA-directed DNA polymerase III alpha subunit [Enterococcus italicus
            DSM 15952]
          Length = 1101

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/1030 (31%), Positives = 516/1030 (50%), Gaps = 61/1030 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            ++ L   S+YSLLE  + L   + K       A+ + D N L   +EF Q    A I+PI
Sbjct: 2    YIPLATKSAYSLLESTIRLPQYVQKAHEYHYEALGLMDHNTLHGTIEFYQLCQKAKIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  LDI   D             T      +  +  GYQ+L+EL ++  L +       
Sbjct: 62   IGLLLDISFADE------------TSYPFYFVAKSFAGYQQLMELSTKKMLGE------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                  +E     + +L      P + A     S + E +         D  +     + 
Sbjct: 103  -SPIMQEEQRMTDVAILI-----PKETAQTTAFSALLENKHSWLSMNVTDVFFCVTPTNL 156

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVT 249
            G + +   Q  +      +  +A   ++ + + +  A +V+  +   +    +       
Sbjct: 157  GEEDFYSYQ--KKMKDLGMRPIACQETVAMDKSENAAIEVVAHIKDGSTFDWRSSAVNEK 214

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                L+   EM   F   PEALE   ++   C   L +H  +LP++     +      ++
Sbjct: 215  AIGVLRPAEEMDQAFQKCPEALEELAKLVVLCQLELPLHQVLLPKYPVPNGE----SAKD 270

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L      GL  R          H   Y++RLD+EL +I +M F  YFLIV D + +A +
Sbjct: 271  YLAYLCKQGLASRQI-------AHTSTYQRRLDYELRIIHQMGFDDYFLIVWDIMNFAHE 323

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             NI  G GRGS AGS+ +Y L+IT+IDP+   LLFERFLNP+R +MPD D+D   +RRD 
Sbjct: 324  QNIVTGAGRGSAAGSLVSYLLSITEIDPIDADLLFERFLNPERYTMPDIDLDIPDNRRDV 383

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            ++ YV+ KYG + VAQI TFG++ AK  LRDV R   +  S+++R  K IPN     +  
Sbjct: 384  ILHYVKEKYGADYVAQIATFGTMAAKMVLRDVARTFGLSQSEMNRWSKAIPNQLKITLK- 442

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +A       RE    +     L +I+ +LEGL RH STHAAG+VI D  L +LVP+    
Sbjct: 443  EAYQTSKSLRELVEMNEKNRLLFQIASQLEGLPRHVSTHAAGVVISDTNLRKLVPLQ-AG 501

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHET 608
              +L +TQF M  +E  GL+K DFLGL+ L+++  +L  +  Q       ++IP +D +T
Sbjct: 502  SGELYLTQFAMNDVETVGLLKMDFLGLRNLSIIDDTLKGIYYQMKQCFTQAMIPKNDKQT 561

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y L     T+G+FQ ES+G+R+ L  ++P  +E++  + +LYRPGP+  I  Y  RKNG 
Sbjct: 562  YELFQRGETVGVFQFESAGIRKVLRDVRPANLEELAVVNALYRPGPMKMIDAYVKRKNGL 621

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EK   +   + P+L+ T G+++YQEQVMQ+A ++ G+SL EAD+LRRA+ KK +  +D+Q
Sbjct: 622  EKSTYLDQSLAPILRSTYGIMVYQEQVMQVASMMGGFSLGEADILRRAISKKKRAVLDEQ 681

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E+F  GA   G  + IA   ++ + +FADYGFN+SHA AY+ I+YQ A++KTHYP+ F 
Sbjct: 682  REKFYQGAQTKGYDRKIAEATYQYIERFADYGFNRSHAFAYSEIAYQMAYLKTHYPLPFY 741

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGT 847
             A +     N  K++++  +A++  +  + PS+N     F +     I + LA+IKG+  
Sbjct: 742  RALLQSVQGNASKMREYISEAKRQGVVFLAPSINASYSGFSIESSEGIRFGLASIKGLRK 801

Query: 848  TTARHIMEASAD-KPFDSLEDFCSRVDS---KKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
               + ++    +  PF S++ F  R++    K + + +LE LV  GA D    +R QLLQ
Sbjct: 802  DFTQAVIRERKERGPFKSMDHFLLRLNQLNPKYIKKEILEPLVEVGAFDTIEPNRKQLLQ 861

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L+      +      +    ++ A      ++ +            +   E+ +LG Y 
Sbjct: 862  ELE-----GKRQNLAFSGGSMDMLALMPLKTTEVVDF------TLPEKLTFEENLLGVYV 910

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            SGHP+  Y  + RK       + V    G  + L   + + ++ +T+KG ++ ++   + 
Sbjct: 911  SGHPIQEYDDLRRKWQTTQLSDLVP---GTTVLLLGYLKNIREIRTKKGEKMAFLDIMDL 967

Query: 1024 AKEYEANFFP 1033
              E     FP
Sbjct: 968  GAERSVTLFP 977


>gi|71907571|ref|YP_285158.1| DNA polymerase III, alpha subunit [Dechloromonas aromatica RCB]
 gi|123760519|sp|Q47EP3|DNAE2_DECAR RecName: Full=Error-prone DNA polymerase
 gi|71847192|gb|AAZ46688.1| error-prone DNA polymerase, DnaE-like protein [Dechloromonas
            aromatica RCB]
          Length = 1027

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/1034 (27%), Positives = 453/1034 (43%), Gaps = 73/1034 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     +  +  A    A+A+TD  +L   +     A   G++
Sbjct: 4    PEYAELHCLSNFSFLRGASHPEELAARALAQGYAALALTDECSLAGVVRAHLAAKKHGLK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G ++                       +V L     GY  L  L++      + K  
Sbjct: 64   FIVGSEMMTVDG----------------LKLVFLACNRHGYGNLSALITLARRRAE-KGG 106

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  + L+ I   G   L       +      N+   A+         F  R ++ ++ 
Sbjct: 107  YTLHRNDLESISPSG--ALPDCLVLWVP----GNNPSSADG--EWLVSRFPGRSWIAVEL 158

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D  R + +  L     LPLVAT +     +      DVL A+   + V +     
Sbjct: 159  HAGPEDAERLAGLQSLGEVCGLPLVATGDVHMHIKARRPVQDVLTALRLKSTVFEAGYAL 218

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              P+     RS +       PE L  T+ IA RC F+L       P  I    +      
Sbjct: 219  F-PNGERHLRSRLRLSRLYPPELLAETLNIAARCEFLLDELRYEYPEEIIPSGE----TP 273

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR++   GL+ R   G           R+R++ EL +IA M +  YFL V D + +A
Sbjct: 274  ASWLRSETERGLQRRYPAGV------PGSVRERIEHELGLIAEMAYEAYFLTVYDIVCYA 327

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +I +  GRGS A S   YAL +T++DP R +LLFERF++ +R   PD D+DF  +RR
Sbjct: 328  RSQDI-LCQGRGSAANSAVCYALGVTEVDPARSALLFERFVSKERGEPPDIDVDFEHERR 386

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            ++VI+Y+  KYG ER A      + + K ALRD GRAL    +Q++ L   +        
Sbjct: 387  EDVIQYIYTKYGRERAALAAALITYRTKGALRDAGRALGFGIAQINALTASLA------W 440

Query: 488  SLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              +      RF E  L    P V++ L I++ L G  RH + H  G VI   PLS+LVP+
Sbjct: 441  WDKREQLPERFAELGLDPHAPRVEKWLAIAEALRGFPRHLTQHVGGFVISRGPLSRLVPV 500

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                 S   V Q++   ++  GL+K D L L  L+ +++ L  + +     + +  IP +
Sbjct: 501  ENAAMSARSVIQWDKDDLDAMGLMKVDILALGMLSAIRRMLQIVGETTGRPMKMQDIPAE 560

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D  TY +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI  D +  Y 
Sbjct: 561  DPATYEMLCHADSMGVFQVESRAQMAMLPRLRPQNFYDLVVEVALVRPGPIQGDMVHPYL 620

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+ G+E+I  I P +D +L+ T GV I+QEQVMQ+A + + ++  EAD LRRAM   K 
Sbjct: 621  KRRQGRERIEEISPAVDAVLERTYGVPIFQEQVMQLAVVAANFTPGEADQLRRAMAAWKR 680

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  ++  +++ ++G + N + ++ A  I   +  F +YGF +SHAA++A++ Y +AW+K 
Sbjct: 681  KGGLEPFEQKLLAGMAANDLPESFARRIIAQIQGFGEYGFPESHAASFALLVYASAWLKR 740

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLA 840
            H+P  FL   +  +           QDAR+  ++++PP V T   D ++     +   L 
Sbjct: 741  HHPAAFLCGLLNSQPMGFYSPSMLIQDARRHGVRVLPPDVMTSDWDSRLDERGAVRLGLR 800

Query: 841  AIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             I G     A+ I      ++PF ++ D  +R   ++ +  +L +     AL      R 
Sbjct: 801  EISGFSVAAAKRITAVCRENQPFLNVADLAARAGLQRRDLDLLAAG---DALQGLAGHRR 857

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            Q                        ++F         +I L   S          + R L
Sbjct: 858  Q------------AAWAATVAVVQGDLFDGTP-VVEAEIELPAPS---DGENLVADYRSL 901

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G     HPL + +  L +       +         IR   +VV +Q+  T  G  I +VT
Sbjct: 902  GLTLRSHPLSLLRQYLAERRFVTAADLKMAGHHTLIRSVGIVVGRQRPGTATG--IVFVT 959

Query: 1020 FSEPAKEYEANFFP 1033
              +          P
Sbjct: 960  LEDETGLSNVVVHP 973


>gi|327188040|gb|EGE55268.1| DNA polymerase III, alpha chain [Rhizobium etli CNPAF512]
          Length = 1084

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/1047 (26%), Positives = 463/1047 (44%), Gaps = 88/1047 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  LQV + +S L GA S   + +        A+ + D N+L   +   + + A G++ 
Sbjct: 2    SYAELQVTTHFSFLRGASSAQELFETAKQLGIEALGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC                +       S+++       Y RL  L++    L + +   
Sbjct: 62   VVGC----------------RLDLADGMSVLVYPMDRSAYSRLTRLIT----LGKSRGGK 101

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
              C+     +  + ++  + G  G I      +   +   +L    +LFGDR YV+L  R
Sbjct: 102  NNCI-----LHWDDIVAYSEGMIG-ILVPDLPD--DLCAIQLRKMAELFGDRAYVSLCLR 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
             R  D+ R  ++  +A   ++  V TN+ LF      +  D++  + H+T +        
Sbjct: 154  RRPNDQLRLHEISNMAARFKVRTVVTNDVLFHEPGRRQLQDIVTCIRHNTTIDDVGFERE 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK   EM  +F    +AL  T+EI  RC F L+      P    +E     K+ 
Sbjct: 214  RHADRYLKPPEEMARLFPRYAQALARTLEIVHRCKFSLEELTYQYP----EEAIVPGKDA 269

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L +        R  +G         D  + +  EL++I  MK++ YFL V   +++A
Sbjct: 270  QASLEHYVWECAPDRYPEGL------PPDVLKTVRHELDLIRTMKYAPYFLTVFSIVRFA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +RR
Sbjct: 324  RSQGI-LCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+++   Y  E+ A   T    +AK A+RDVG+AL +P   +  L   +        
Sbjct: 383  EEVIQWIYKTYTKEKAALCATVTRYRAKGAIRDVGKALGLPEDVIKALSSGMW------- 435

Query: 488  SLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            S      D   RE  L +P   RL   L+++Q+L G  RH   H  G V+    L  LVP
Sbjct: 436  SWSEEIPDRNIRELNL-NPDDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVP 494

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +      D  + +++   +E    +K D L L  LT + K+ D + +     +DLS I  
Sbjct: 495  IEPATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMAKAFDLIREHKGQDLDLSKISQ 554

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y
Sbjct: 555  EDAATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPY 614

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R+ GKE +    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M   K
Sbjct: 615  LRRREGKEPVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFK 674

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                + + K++ +SG  KNG S   A   F  L  F  YGF +SHAA++A+I+Y + ++K
Sbjct: 675  FTGGVSRFKDKLVSGMVKNGYSAEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIK 734

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNR 834
             H P  F AA +  +        +   DA +  +++ P  VN    D  +        + 
Sbjct: 735  CHCPDVFCAALLNSQPMGFYAPAQIVGDAIKHGVEVRPVCVNRSRWDCTLERIGGSDRHA 794

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +      +KG+    A  I+ A  + PF S++D   R           E+LV     D F
Sbjct: 795  VRLGFRQVKGLAVADAARIVAARMNNPFASVDDMWRRSSVP------TEALVQLAEADAF 848

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--------SDKITLEKFSVE 946
                   L SL   ++ A W  K   ++   +FA                ++ L + +  
Sbjct: 849  -------LPSLKLERRDALWAIKALRDEPLPLFAAAAEREATAIAEQQEPEVALRQMNDG 901

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            ++ +    +   +G     HP+   +  L    I    E++    G  +  A +V+ +Q+
Sbjct: 902  HNVI---EDYSHIGLTLRQHPVAFLRKGLSVRNIITCAEAMNARDGRWVYTAGLVLVRQK 958

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + KG  + ++T  +         +P
Sbjct: 959  PGSAKG--VMFITIEDETGPANVVVWP 983


>gi|227513307|ref|ZP_03943356.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
 gi|227083508|gb|EEI18820.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
          Length = 1093

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/1009 (33%), Positives = 521/1009 (51%), Gaps = 48/1009 (4%)

Query: 32   ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91
            ++ +       A+A+TD N ++ A+EF      AGIQPII           L +   G  
Sbjct: 1    MVTEAKKRGYKALAMTDINVMYGAVEFYDTCIDAGIQPII----------GLTLNLPGVM 50

Query: 92   PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151
                  SI+LL     GYQ L+++ +   L   G+ +V I          +GL ++    
Sbjct: 51   LSENNYSILLLAKNQTGYQNLLKIST---LKSSGETNVMIDQ---LNGRLDGLYVILPPF 104

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRHRGYDRYRESQVVQLAYTHEL 209
            +  I+       S    + +     L      +   +  H          + ++A  +++
Sbjct: 105  A-EINDLLLQGKSADISELISKLMDLGLTKQDIKFGVDYHSS--DTLIDMLSKVAADNQV 161

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLP 268
             L+A     +L+ EDY    VL A+A  T +S   +  +    ++L+ + +M   +  L 
Sbjct: 162  QLIADAPVQYLNAEDYFPMQVLKAIAAGTKISNVAELSQQVGPYFLRPQDQMEKEYQRLH 221

Query: 269  --EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
               AL+   E+   C   ++   P LP+F          E    LR     GL  RL   
Sbjct: 222  LNAALQAIDEVVSNCHVEIKKKQPKLPQFETPN----DMEPGQYLRQLCERGLSKRLEAA 277

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
             I+       YR RLD EL+VI  M F  YFLIV D I +A +  I  GPGRGS AGS+ 
Sbjct: 278  HISDDAP---YRHRLDRELSVIHSMGFDDYFLIVWDVINFAHQARIITGPGRGSAAGSLV 334

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L ITD+DP+++ LLFERFLNP+R+ MPD D+D   D+RD+VI+YV  KYGH+RVAQI
Sbjct: 335  AYTLFITDVDPIKYELLFERFLNPERVQMPDIDLDIPDDKRDDVIQYVHQKYGHQRVAQI 394

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
            ITFG+L AK A RDVGR   +  +Q D   K IP+   H     A  +  + +       
Sbjct: 395  ITFGTLAAKQATRDVGRVFGLNPNQQDVWSKAIPSAF-HVTLADAYHNSQQLKNLVADSN 453

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
                L + +Q LEGL RH STHAAG+V+ D  L  LVP+  D    L +TQ++  ++E  
Sbjct: 454  LNKSLFKTAQVLEGLPRHYSTHAAGLVLSDNLLVDLVPLQ-DGNDGLLMTQYSKDYVESV 512

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K DFLGL+ LT+L  +L  + Q  G K+++S IP DD +T  L     T G+FQ ES
Sbjct: 513  GLLKIDFLGLRNLTILADALAEIKQATGQKINISQIPLDDKKTLKLFANGDTTGVFQFES 572

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
            SG+R  L  + P+  ED+  + +LYRPGP++NI     RK+ +E +      +  +LK T
Sbjct: 573  SGIRSVLRRLHPEQFEDVALVNALYRPGPMENIDEVVKRKSHQEALTYPDQSLKDILKST 632

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             GVI+YQEQVM +A  ++G+SL +AD+LRRAM KK  + MD+ K  F++GA K G  K +
Sbjct: 633  YGVIVYQEQVMLVASKMAGFSLGQADILRRAMSKKKLKVMDRMKSLFLTGAEKRGHPKQV 692

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A  +F+ + KFA+YGFNKSHA AY+ ++Y+ A++K ++P EF  A +    ++  K+K++
Sbjct: 693  AEKVFDYIEKFANYGFNKSHAVAYSKMAYELAYLKVYFPGEFHVALLNSVQNSSVKMKEY 752

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDS 864
              DA+   ++++ P +N    DF   D +I + LA+IKGV     + I+ +   +  + S
Sbjct: 753  LSDAKSMGVKVVAPDINKSRADFSYQDQQIVFGLASIKGVRHDMVQDILNDRDQNGRYKS 812

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              +  +R+  K     ++ +L+++GALD F Y+R +L+ +        Q      +    
Sbjct: 813  FPNLLARLSDKYRKPDLINALIYSGALDGFSYNRSELISAAPEFISSIQL-----SGDSM 867

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            ++F       + + T+ +        R E E   LG Y SGHP++ +  + +++  K   
Sbjct: 868  SLF------KALEPTVPRKPEMPLMQRLEKENDYLGAYLSGHPVERFTALRKRLDAKLTN 921

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + V  +  N + L   +   +  +T+ G ++ +   S+   E     FP
Sbjct: 922  QLVVGM--NQVVLILYITKVKIIRTKTGKQMAFFDGSDEVGEMSVTVFP 968


>gi|315504584|ref|YP_004083471.1| DNA polymerase iii, alpha subunit [Micromonospora sp. L5]
 gi|315411203|gb|ADU09320.1| DNA polymerase III, alpha subunit [Micromonospora sp. L5]
          Length = 1116

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/1051 (27%), Positives = 458/1051 (43%), Gaps = 81/1051 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS++S L+GA     + ++ A     A+A+TD +  +  + F++ A A  +  
Sbjct: 65   PYAELHAHSNFSFLDGASHPEELAEEAARLGLTALAVTDHDGFYGVVRFAEAARALRLPT 124

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G +L + +        Q   P P    +++L    EGY RL   +SR  L    K   
Sbjct: 125  IFGAELSLGLPG-----PQNGEPDPLGRHLLVLAHGHEGYARLAATISRAQLRGGEKGRP 179

Query: 130  RI-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
                L  L     + +++LTG   G +  A        A + L     LF  + + V L 
Sbjct: 180  VYGELEELAAELRDHVLVLTGCRKGHVPAALLTEGVDAAARELDRLTALFGAETVAVELT 239

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDR 245
             H    D  R   +  LA    LP VATNN  + +         + AV     + +    
Sbjct: 240  DHGHPVDADRNDALADLAAAAGLPTVATNNVHYATPGRRRLATTVAAVRARRSLDEIDGW 299

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                   +L++ +EM + F+  P A+    E     +F LQ+ AP LP +          
Sbjct: 300  LPAAATAHLRSGAEMAARFAAYPGAVARAAEYGAELAFDLQLVAPRLPAYPVPPG----H 355

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E + LR   + G   R          H + Y  +L+ EL +I  + F GYFL+V D + 
Sbjct: 356  TEMSWLRRLTMDGARERYG----PPEAHPEAY-AQLEHELRMIEDLGFPGYFLVVYDIVA 410

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            + +  +I    GRGS A S   YAL IT++D +R  LLFERFL P+R   PD D+D   D
Sbjct: 411  FCRAQDI-YCQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVDIESD 469

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI++V  +YG E  AQ+    S + ++A+RDV +A      Q D   K I    + 
Sbjct: 470  RREEVIQHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQIDRWGSV 529

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                 A  D +   E         +++  + +L+   RH   H+ G+VI DRP+ ++ P+
Sbjct: 530  -----AAVDVADIPE---------QVVAYANELQTFPRHLGIHSGGMVICDRPVIEVCPV 575

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                     V Q++       GL+KFD LGL  L+ L    D +  R   +DL  +  DD
Sbjct: 576  EWGRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYGYDLIGSR---LDLGDMTLDD 632

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
             E Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI       Y  
Sbjct: 633  PEVYDMLCRADSVGVFQVESRAQMATLPRLKPREFYDLVVEVALIRPGPIQGGSVHPYIR 692

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            RKNG+E +   HPL+   L++T GV ++QEQ+MQ+A  L+G+  + AD LRRAM  K+  
Sbjct: 693  RKNGQEPVTYAHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAGADQLRRAMGAKRSV 752

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E M +  +R  +G ++ GI+  +A +++  L  FA YGF +SHA ++A + Y ++W+K +
Sbjct: 753  ERMAQIADRLYAGMAERGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASSWLKRY 812

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--------------- 827
            +P  FLAA +  +       +    DAR+  +++  P +N                    
Sbjct: 813  HPGPFLAALLNAQPMGFYSPQTLADDARRHGVEVRRPDINASGAKAVLESTPETRWGSVP 872

Query: 828  ------FKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRR 880
                  + +G   +   L +++ +G   A  I     A  P+  + D   RV        
Sbjct: 873  GEPPHAWGLGGPAVRLGLGSVRTLGEDVAERIEAERAAHGPYRDMPDLARRVGLTA---A 929

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE+L  A A  CFG +R Q                    ++   +     G  +D  TL
Sbjct: 930  QLEALATADAFACFGLTRRQ----------ALWAAGAAAQDRPGRLPGTVTG--ADPPTL 977

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
               +  +   R   +    G     HP    +  L ++G            G  IR+  +
Sbjct: 978  PGMAAVD---RLVADVWATGLSPESHPARFIRDRLDELGAVPIARLGQVPPGQRIRVGGI 1034

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            V  +Q+  T  G  + ++   +         
Sbjct: 1035 VTHRQRPATAGG--VTFLNLEDETGMLNVTC 1063


>gi|320527694|ref|ZP_08028866.1| putative DNA polymerase III DnaE [Solobacterium moorei F0204]
 gi|320131937|gb|EFW24495.1| putative DNA polymerase III DnaE [Solobacterium moorei F0204]
          Length = 1021

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/1027 (32%), Positives = 521/1027 (50%), Gaps = 52/1027 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL V S Y+LL+  + +  ++         ++A+TD + +     F  +    GI PII
Sbjct: 3    THLFVRSCYTLLDSTIRIPELVSTAKKYGYQSVALTDHHVMHGVARFLHECKKEGIHPII 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++D+         ++ K PF      +LL    +GY  L++L S   L D  +    +
Sbjct: 63   GLEVDV-------FYHEQKVPF------LLLAKNNKGYTNLMKLSS--MLCDGREY---V 104

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L +   E   ++  G  G  D            ++L   K  F             
Sbjct: 105  TYEELIQY-CEHNFLVVYGEGGYFDAELISEDRTGITQKLALMKSEFPPFDIAISYEETS 163

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
              R + + +  LA    +  +A N   +L ++DYE   VL A+   T +  K+   +T  
Sbjct: 164  LWRSKNAVLKALAKAQGIQTIALNKIYYLGQKDYETLKVLSAIKQGTTLRDKNVTPITG- 222

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             Y  +  EM  I+    + L  T EIA  C     +    +P +  K+        E  L
Sbjct: 223  RYFLSIPEMEQIYD--ADDLRRTDEIASECHCDGNLEKTGIPEYPLKDGI----TAEQYL 276

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                +AGL+ RL       G     Y +RL +EL VI +M F  YFLIV DFI++ ++  
Sbjct: 277  PQLCLAGLKKRL------NGDLKPAYVERLKYELQVIHQMGFEDYFLIVYDFIRYGRQKG 330

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I +GPGRGS AGS+ AY L IT +DPL+++LLFERFLN +R+SMPD D D     R E+I
Sbjct: 331  IYIGPGRGSAAGSLVAYCLGITMVDPLQYNLLFERFLNAERVSMPDIDTDIPDIHRQEII 390

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             YV  KYG + +A IITF +L ++A LRDVG+A+ +P  ++D +  LIP  P   +  +A
Sbjct: 391  DYVYQKYGEQHIANIITFDTLASRAVLRDVGKAMDIPKREIDMIVGLIPQTPKITLK-KA 449

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                 + R    A P +     +++++EGL ++ S HAAGIV+  +P+ +++P  + +  
Sbjct: 450  YEQKEKLRVLLNASPQLMTYFNMAKRIEGLPKNKSIHAAGIVMSGKPIEEIIPTIQ-MAE 508

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
             +  TQF   ++E+ GLIK DFLGLK LT + + +  + ++     +  IP  D +TY L
Sbjct: 509  GMKTTQFVGNYLEERGLIKMDFLGLKNLTTIDEIVQMIHKKNPDFHILSIPLHDAKTYRL 568

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                 T+G+FQ ES GMR  L  M+P+C EDIIA ++L+RPGP D I VY   +     +
Sbjct: 569  FAQADTIGVFQFESDGMRNLLRKMKPNCFEDIIAALALFRPGPKDQINVYLEGRKNPSSV 628

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
            V     ++P+LKET GV IYQEQVM +AQ+ + +SL +AD+LR+A+ KK +EE+   ++ 
Sbjct: 629  VYPSKELEPILKETYGVTIYQEQVMLMAQIAAKFSLVKADILRKAISKKNEEELAGLRQE 688

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            ++ G  +NG S  +A  +F+L  KFA YGFNKSHA AY +++YQ A++K +YP+EF  + 
Sbjct: 689  YVRGCKENGYSDEMASYLFDLAEKFAGYGFNKSHAVAYGLVAYQLAYLKANYPLEFYTSI 748

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            +   + +  K   +  + R+ +I I  P VN     +      I   L+ IK VGT  AR
Sbjct: 749  LNSVIGDSTKSAIYITECRRKHISIEAPDVNRSTDIYYHNGKSIILPLSIIKDVGTLAAR 808

Query: 852  HIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
             I++       F    DF +R   +K+NR  LE L+ AGALD F   R  ++ +LD+  K
Sbjct: 809  TILDERDKKGSFGDYFDFVARAVLRKINRTQLERLISAGALDGFDLGRTTMMNTLDDAVK 868

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLE-KFSVENSSVRF-ENEQRVLGFYFSGHPL 968
            YA+ V+          F  +       ++      +++S     ENE+  LGF     P+
Sbjct: 869  YAKLVQVP--------FGTQLSIDPQLVSKPVVVRMKDSQEELSENEKAALGFNLGEQPI 920

Query: 969  DVYKPILRKMGIK--GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               +   +K+GI      E  +       R  A + S +Q +TRKG  + ++  ++   E
Sbjct: 921  VHLR---QKLGITYPPLAELNSNR--GLYRGFAYIQSVRQIRTRKGDLMCFLKLTDETGE 975

Query: 1027 YEANFFP 1033
             +    P
Sbjct: 976  SDMAVMP 982


>gi|302868946|ref|YP_003837583.1| DNA polymerase III subunit alpha [Micromonospora aurantiaca ATCC
            27029]
 gi|302571805|gb|ADL48007.1| DNA polymerase III, alpha subunit [Micromonospora aurantiaca ATCC
            27029]
          Length = 1116

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/1051 (27%), Positives = 459/1051 (43%), Gaps = 81/1051 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS++S L+GA     + ++ A     A+A+TD +  +  + F++ A A  +  
Sbjct: 65   PYAELHAHSNFSFLDGASHPEELAEEAARLGLTALAVTDHDGFYGVVRFAEAARALRLPT 124

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G +L + +        Q   P P    +++L    EGY RL   +SR  L    K   
Sbjct: 125  IFGAELSLGLPG-----PQNGEPDPLGRHLLVLAHGHEGYARLAATISRAQLRGGEKGRP 179

Query: 130  RI-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
                L  L     + +++LTG   G +  A        A + L     LF  + + V L 
Sbjct: 180  VYGELEELAAELRDHVLVLTGCRKGHVPAALLTEGVDAAARELDRLTALFGAETVAVELT 239

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDR 245
             H    D  R   +  LA    LP VATNN  + +         + AV     + +    
Sbjct: 240  DHGHPVDADRNDALADLAAAAGLPTVATNNVHYATPGRRRLATTVAAVRARRSLDEIDGW 299

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                   +L++ +EM + F+  P A+    E     +F LQ+ AP LP +          
Sbjct: 300  LPAAATAHLRSGAEMAARFAAYPGAVARAAEYGAELAFDLQLVAPRLPAYPVPPG----H 355

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E + LR   + G   R          H + Y  +L+ EL +I  + F GYFL+V D + 
Sbjct: 356  TEMSWLRRLTMDGARERYG----PPEAHPEAY-AQLEHELRMIEDLGFPGYFLVVYDIVA 410

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            + +  +I    GRGS A S   YAL IT++D +R  LLFERFL P+R   PD D+D   D
Sbjct: 411  FCRAQDI-YCQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVDIESD 469

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI++V  +YG E  AQ+    S + ++A+RDV +A      Q D   K I  D   
Sbjct: 470  RREEVIQHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQI--DRWG 527

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             V+   +AD               +++  + +L+   RH   H+ G+VI DRP+ ++ P+
Sbjct: 528  SVAAVDVADIPE------------QVVAYANELQTFPRHLGIHSGGMVICDRPVIEVCPV 575

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                     V Q++       GL+KFD LGL  L+ L    D +  R   +DL  +  DD
Sbjct: 576  EWGRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYGYDLIGSR---LDLGDMTLDD 632

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
             E Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI       Y  
Sbjct: 633  PEVYDMLCRADSVGVFQVESRAQMATLPRLKPREFYDLVVEVALIRPGPIQGGSVHPYIR 692

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            RKNG+E +   HPL+   L++T GV ++QEQ+MQ+A  L+G+  + AD LRRAM  K+  
Sbjct: 693  RKNGQEPVTYAHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAGADQLRRAMGAKRSV 752

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E M +  +R  +G ++ GI+  +A +++  L  FA YGF +SHA ++A + Y ++W+K +
Sbjct: 753  ERMAQIADRLYAGMAERGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASSWLKRY 812

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--------------- 827
            +P  FLAA +  +       +    DAR+  +++  P +N                    
Sbjct: 813  HPGPFLAALLNAQPMGFYSPQTLADDARRHGVEVRRPDINASGAKAVLESTPETRWGSVP 872

Query: 828  ------FKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRR 880
                  + +G   +   L +++ +G   A  I     A  P+  + D   RV        
Sbjct: 873  GEPPHAWGLGGPAVRLGLGSVRTLGEDVAERIEAERAAHGPYRDMPDLARRVGLTA---A 929

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE+L  A A  CFG +R Q                    ++   +     G  +D  TL
Sbjct: 930  QLEALATADAFACFGLTRRQ----------ALWAAGAAAQDRPGRLPGTVTG--ADPPTL 977

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
               +  +   R   +    G     HP    +  L ++G            G  IR+  +
Sbjct: 978  PGMAAVD---RLVADVWATGLSPESHPARFIRDRLDELGAVPIARLGQVPPGQRIRVGGI 1034

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            V  +Q+  T  G  + ++   +         
Sbjct: 1035 VTHRQRPATAGG--VTFLNLEDETGMLNVTC 1063


>gi|221635931|ref|YP_002523807.1| error-prone DNA polymerase [Thermomicrobium roseum DSM 5159]
 gi|221157507|gb|ACM06625.1| error-prone DNA polymerase [Thermomicrobium roseum DSM 5159]
          Length = 1059

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/1057 (29%), Positives = 493/1057 (46%), Gaps = 92/1057 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS +SLL+       ++ + AA     +A+TD + L   + F + A   GI P
Sbjct: 4    PYAELHAHSCFSLLDAPCHPEQLVQQAAALGYEHLALTDHDALHGVVRFVRAAERVGIHP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-----LDQ 124
            I+G ++ ++                    + LL     GY  L  L+S   L        
Sbjct: 64   IVGAEITMEDGS----------------HLALLAEDERGYATLARLLSAARLGWPTPEGP 107

Query: 125  G-----------KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            G           +++V +   WL +   +GLI+LTG   GP+ RA    +   A  R   
Sbjct: 108  GSEDTALAGSPARRAVALPWHWLVD-HHDGLIVLTGCRQGPLARALTEGNRADALARAHW 166

Query: 174  FKKLF-GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
              ++F  +R +V LQ H    DR R +++  LA T  LPLVAT N  +L    +   DVL
Sbjct: 167  LARVFGPERCFVELQDHGERGDRERCTELAALARTAGLPLVATGNVHYLDAAGWRLQDVL 226

Query: 232  MAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +     +      R  +  + L   + M   F   P+A+ NT  IA RC   L     
Sbjct: 227  VCIREGITIETPHPARKTSAAYRLVAPASMAHRFRSFPDAVANTRRIAERCQVSLDFRQV 286

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
              P           +     LR +A  G + R        G  ++   ++L+ EL VI R
Sbjct: 287  RFPPL--PHLVPPGETPMQVLRRQAYEGAQRRY-------GQLSEPVVRQLEHELGVIER 337

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            +  + +FLI AD     +      G GRGS A S+ AY L IT +DPL   LLFERFLN 
Sbjct: 338  LGVAEFFLICADLANRFR------GRGRGSAADSLVAYCLGITQVDPLAHRLLFERFLNE 391

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R SMPD DIDF  + R+  I YV   YG E  A +  + + QA++A+RD+GR L +P  
Sbjct: 392  ERPSMPDIDIDFGLEDRERAIAYVYATYGVEHAAMVCNYVTFQARSAIRDLGRVLGLPPE 451

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR----LLEISQKLEGLYRHAS 526
             +D L K         + + A A   R        P + R    L+ +  +LE + RH S
Sbjct: 452  IIDELAKS-QGRLGEALPVLARALAPRL------SPDLRRRLAWLVRLVPQLEDIPRHLS 504

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             H  G+VI  RP+ +   +         V  ++ + IE+AGLIK D L ++ ++++ +++
Sbjct: 505  VHVGGMVIAGRPVVEFTTVEPSRMPGRVVLGWDKRDIEEAGLIKTDVLCVRAISVVHQAI 564

Query: 587  DFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            + + Q  G+++DL  +P DD   Y LL T  T+G +Q+ES   +Q+L    P+  ED+IA
Sbjct: 565  ELIEQASGLRIDLEQLPLDDPAVYRLLQTADTIGTYQVESRAQQQSLPRTHPERFEDLIA 624

Query: 646  LVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
             V++ RPGPI   +   Y  R+ G E +  +HP ++P+L+ET GVI+YQEQV+++A  ++
Sbjct: 625  QVAIIRPGPIQGGMVHPYIRRRRGLEPVRYLHPKLEPILRETLGVILYQEQVLEVAMAIA 684

Query: 704  GYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            G +  +AD  RRAM  K+ +  M+  +  F++GA +NG+++ +A  IFE +A FA+YGF 
Sbjct: 685  GMTAGQADAFRRAMGSKRSRAAMEALRGDFLAGAERNGVARPVAERIFEQIAAFAEYGFC 744

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            KSHAAA A  +Y+T W++ HYP   L A +  +       +    DA +  I ++PP V 
Sbjct: 745  KSHAAALARTAYETLWLRAHYPAALLCALLNNQPMGFYAPEVLIWDALRRGIHVLPPDVL 804

Query: 823  TPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                   +        +   L A++GVG   A  I+ A +++PF    D   R       
Sbjct: 805  ASAARSTLTGDPVHGPVRLGLTAVRGVGRAAAERIVAARSEEPFRDTADVVRRAQLT--- 861

Query: 879  RRVLESLVFAGALDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
               +E+LV  GA D      SR +LL  L         V   R  +   +          
Sbjct: 862  PEQVEALVLVGAFDRLAPDRSRRELLWDL-------LAVATERPERPRLL-----DVSEP 909

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
             + L +    ++  +   +  +LGF    H +++Y+   R + +           G   R
Sbjct: 910  AVRLPEL---DTVEQTFLDYAILGFCLDRHLMELYRAQRRILRVTPAARLRTLPPGATAR 966

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +A +VV +Q   T +G  + ++T  +          P
Sbjct: 967  VAGLVVCRQAPPTARG--VLFLTLEDETGLVNVIVPP 1001


>gi|114320331|ref|YP_742014.1| DNA polymerase III, alpha subunit [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311913|sp|Q0A9G3|DNAE2_ALHEH RecName: Full=Error-prone DNA polymerase
 gi|114226725|gb|ABI56524.1| error-prone DNA polymerase, DnaE-like protein [Alkalilimnicola
            ehrlichii MLHE-1]
          Length = 1025

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/1036 (26%), Positives = 454/1036 (43%), Gaps = 82/1036 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L   S +S L GA     ++ + A     A+A+TD  ++  A+   Q A    +  
Sbjct: 4    DYAELHCLSCFSFLRGASQPAELVQRAAELGYRALALTDACSVAGAVRAHQAAKETDLHL 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G                 +      P +VLL      +  L  L+S        K   
Sbjct: 64   IHGS----------------EIRIHQGPLLVLLAPCRRAWAELCALISLGRS-QARKGDY 106

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
            R+    L E      + L      P D            ++   F + FGDR +V +   
Sbjct: 107  RLEREQL-EGTLPHCLALWVPDDAPHD-----------AEQGRWFARHFGDRGHVAVALH 154

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247
            H   D  R  +++ LA    LP VA    L          D L A+ H  T+ +      
Sbjct: 155  HGPDDEARLQRLLALADRFRLPAVAAGGVLMHRRGRRALQDTLSALRHRRTLAAMGTALE 214

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + + +L++   +  ++   P  L  +V +A +C F L       P  +    +      
Sbjct: 215  CSGERHLRSLHSLARLYP--PALLRRSVHLADQCRFSLDKLRYEYPAELVPAGE----TP 268

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR   + G      QG   K         ++D EL +IA M +  +FL V D + +A
Sbjct: 269  ASYLRRLTLEGARRHWPQGMPDK------VAHQVDHELALIAEMGYEPFFLTVHDVVAFA 322

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I +  GRGS A S   + L IT +DP R SLLFERF++ +R   PD D+DF  +RR
Sbjct: 323  RRRGI-LCQGRGSSANSAVCFCLGITAVDPARQSLLFERFISKERGEPPDIDVDFEHERR 381

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG  R A   T    + ++ALRD GRAL +  + +DRL   I       V
Sbjct: 382  EEVIQYIYRKYGRHRAALAATVIRYRPRSALRDAGRALGLDAATIDRLAGSIQWWDGKRV 441

Query: 488  SLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                  D  R REA L   DP + R + I+ +L GL RH S H  G VI + P+S+LVP 
Sbjct: 442  ------DPERLREAGLNPDDPRLARTVAIAGQLLGLPRHLSQHVGGFVISEGPISELVPT 495

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604
                 +   + Q++   +E  GL+K D L L  L+ ++++ D LA  RG ++ L+ +P +
Sbjct: 496  ENAAMAGRTIIQWDKDDLEALGLLKVDVLALGMLSCIRRAFDLLAGFRGRRLTLADVPAE 555

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D   Y +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y 
Sbjct: 556  DPAVYRMISDADTMGVFQIESRAQMAMLPRLRPQTFYDLVIEVAIVRPGPIQGDMVHPYL 615

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+ G E +      +  +L  T GV I+QEQVMQ+A + +G++  EAD LRRAM   K 
Sbjct: 616  RRREGLEPVDYPSEAVRGVLARTLGVPIFQEQVMQLAVVAAGFTPGEADALRRAMAAWKR 675

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  +   +++ + G  +NG  +  A  +F  +  F +YGF +SHAA++A++ Y +AW+K 
Sbjct: 676  KGGLGPFRDKLLKGMRRNGYCEDYAERLFRQIQGFGEYGFPESHAASFALLVYVSAWLKC 735

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIY 836
            H P  F  A +  +        +  +DA +  ++I P  V     D        G+  + 
Sbjct: 736  HEPALFTCALLNSQPMGFYAPAQLLRDAERHGVEIRPVDVRHSDWDCSPEHRGDGEPALR 795

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  ++G+    A  ++ A   +PF  +++   R     L+RR LE+L  AGAL     
Sbjct: 796  LGLRLVRGLNRRAADRLIAARGRRPFRDVQEMARRA---ALHRRDLETLAHAGALRGLAG 852

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R      +                    +F       +                   + 
Sbjct: 853  HRRAAWWQVLGA------------EAGLPVFEDLHIEEAA----PALDAPAEGEDLVADY 896

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LGF    HPL + +P LR+  +    +  +T  G  +R A +V+++Q+  +  G  + 
Sbjct: 897  TSLGFTLGRHPLALLRPQLRRRRLLTAADLASTGHGRLVRTAGLVINRQRPGSAGG--VT 954

Query: 1017 WVTFSEPAKEYEANFF 1032
            ++T  +   +     +
Sbjct: 955  FLTLEDETGQINLVVW 970


>gi|257094455|ref|YP_003168096.1| DNA polymerase III subunit alpha [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
 gi|257046979|gb|ACV36167.1| DNA polymerase III, alpha subunit [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
          Length = 1042

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/1042 (26%), Positives = 447/1042 (42%), Gaps = 80/1042 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     ++++  A    A+AITD  +L   +   + A   G+Q
Sbjct: 6    PFYAELHCCSNFSFLRGASHPEELVERAQALGYSALAITDEASLAGVVRAHKAARERGLQ 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG +  +                     +VLL     GY  L  L++        K  
Sbjct: 66   LIIGAEFRLT------------DARQPGSRLVLLAQNRAGYGNLSALITLARRRSA-KGE 112

Query: 129  VRICLSWLQEIGTEGLI--MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+  +  ++     L    L    +  I  A     +   E R       F +R ++ +
Sbjct: 113  YRLYRNDFEKPDLVALRSGALPDCLALWIADADADTDASAEEGR--WLASRFPNRSWLAV 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            + H G D   R + +++LA    LP VA  +            D L A+   T +     
Sbjct: 171  ELHSGPDDAARLATLLELAKASGLPAVAAGDVHMHLRARRPLQDTLTAIRLYTTLFAAGH 230

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  + +L+ R  +  I+      L  T+ +A RC F L       P  +  +     
Sbjct: 231  ALFANGERHLRTRLRLARIYPAE--LLAATLLVAARCHFSLDELRYEYPDEMVPDG---- 284

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +     LR +   GL  R               R R++ EL +I  + +  YFL V D +
Sbjct: 285  QTPATFLRAEVTEGLRRRYPDVV------PPGVRARVEHELALINELAYEPYFLTVYDIV 338

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+  +I +  GRGS A S   Y L IT++DP R +LLFERF++ +R   PD D+DF  
Sbjct: 339  NFARSRHI-LCQGRGSAANSAVCYCLGITEVDPARSNLLFERFISRERGEPPDIDVDFEH 397

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI+Y+  KYG ER A      + + + ALRDVGRAL    +Q+D L   +     
Sbjct: 398  ERREEVIQYLYAKYGRERAALTAAVVTYRTRGALRDVGRALGFGSAQIDALTASLAWWDK 457

Query: 485  H---PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                P  L+A+  D        A P V + L ++  L G  RH S H  G VI   PL++
Sbjct: 458  RDQLPGRLRAVGLDP-------AAPRVAKWLALADALRGFPRHLSQHVGGFVISRGPLAR 510

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVP+         V Q++   ++  GL+K D L L  L+ + ++LD +  R     L  +
Sbjct: 511  LVPIENAAMPARTVIQWDKDDLDTLGLLKIDVLALGMLSAIHRALDLVGCR-----LPEV 565

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P +D   Y ++    T+G+FQ+ES      L  ++P    D++  V+L RPGPI  D + 
Sbjct: 566  PAEDPAVYDMICAADTVGVFQIESRAQMAMLPRLRPRNFYDLVIEVALVRPGPIQGDMVH 625

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R++G+E+I  + P I  +L+ T GV I+QEQVMQ+A + +G++  EAD LRRAM  
Sbjct: 626  PYLRRRHGRERIEPMRPEIAAVLERTCGVPIFQEQVMQLAVVAAGFTPGEADQLRRAMAA 685

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             + K  +   +E+ I+G  + G  +  A  IF  +  F +YGF +SHAA++A++ Y +AW
Sbjct: 686  WRRKGGLGPFEEKLITGMRQRGHDEAFAKRIFAQIQGFGEYGFPESHAASFALLVYVSAW 745

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD---------FK 829
            +K H+P  FL A +  +      + +  QDAR+  +++ P +V+                
Sbjct: 746  LKRHHPAAFLCALLNSQPLGFYSLSQLVQDARRHGVEVRPATVSASGWKALLESAAPAIA 805

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             G   +   LA+I G+   TA  ++EA    PF ++ +  +R        R L+ L  A 
Sbjct: 806  AGGPAVRLGLASIVGLSQATAVRLLEARKQGPFANIAELAARARLTH---RDLDLLAAAD 862

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL      R Q                        ++ +           L + ++ +  
Sbjct: 863  ALASLSGHRRQ------------AAWAAAGVAVQLDLLSGNAPPED----LAELAIPSEG 906

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 +          HPL + +  L         +          R A +V  +Q+  T
Sbjct: 907  EDLIADYASTRLTLGRHPLALLRERLSAQRFVSASQLQRAPDRQLARAAGIVTCRQRPGT 966

Query: 1010 RKGSRIGWVTFSEPAKEYEANF 1031
              G  I +VT  +         
Sbjct: 967  ASG--IVFVTLEDETGLANIVV 986


>gi|221211167|ref|ZP_03584146.1| error-prone DNA polymerase [Burkholderia multivorans CGD1]
 gi|221168528|gb|EEE00996.1| error-prone DNA polymerase [Burkholderia multivorans CGD1]
          Length = 1060

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/1044 (26%), Positives = 457/1044 (43%), Gaps = 63/1044 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S++S L GA     ++++        IAITD  +L  A      A AAG+ 
Sbjct: 3    PAYAELFCRSNFSFLHGASHAEELVERAVDLGYRGIAITDECSLAGAPRMHVAARAAGLP 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG   ++   +       G  P P    +VLL    EGY  L EL+S   +    K +
Sbjct: 63   LIIGSYFEVTPDE----APPGHDPGPGAFGLVLLAQNREGYGNLSELISWRRMA-APKGT 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             ++    L     E   +        I    +   + V + ++  F+  FG+R  + L Q
Sbjct: 118  YKLTPRMLSRPPEEFAHLRGMPDCFAILVPVYPVRADVLDAQVAWFRATFGERARLGLVQ 177

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D  +  ++        + +VA  +            DV+ A+     VS+     
Sbjct: 178  LQRALDGPQREEIRAAGARRGVRVVALGDVTMHKRSCKPLQDVMTAIRLGMPVSECGYAL 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R+ + ++FS   + +  T  I   C F L+      P  +          
Sbjct: 238  APNAEQHLRSRARIATLFS--ADEIAQTCAILDACHFSLKELEYEYPLELVPRG----HT 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR +  AG+  R   G   K        +++  EL +IA++ +  +FL V D +++
Sbjct: 292  PTSYLRQETWAGVARRYWNGVPEK------VAKQIRHELALIAKLNYEPFFLTVYDIVKF 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  NI +  GRGS A SV  Y L IT+++P + ++LFERF++ +R   PD D+DF   R
Sbjct: 346  ARSQNI-LCQGRGSAANSVVCYCLGITEVNPEQSTMLFERFISVERGERPDIDVDFEHQR 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+++  KYG +R A      + + +  LR+VG+AL +    VDR+ K         
Sbjct: 405  REEVIQHIYKKYGKDRAALAAAVSTYRPRGVLREVGKALGVDPMLVDRVAKGHRWFDGSR 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              LQ               P +    E++ +L    RH S H+ G VI    L++LVP+ 
Sbjct: 465  DLLQQFEMVG----LDPVTPLIRTWAELAARLLNFPRHLSQHSGGFVISRGKLTRLVPVE 520

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------AQRGVKVDLSL 600
                    V Q++   +E  GL+K D L L  L+ L ++ D        A  G    L  
Sbjct: 521  NAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMRTAWRGPAADGKPFTLKH 580

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI-- 658
            IP +D  TY ++    T+G+FQ+ES      L  +QP    D++  V++ RPGPI     
Sbjct: 581  IPQEDKATYDMICRADTVGVFQIESRAQMSMLPRLQPRTYYDLVIEVAIVRPGPIQGGAV 640

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R+ G EKI      + P L+ T GV I+QEQVMQIA + +G++  EAD LRRAM 
Sbjct: 641  HPYLRRRQGLEKISYPKDDLKPALERTMGVPIFQEQVMQIAMIAAGFTAGEADGLRRAMA 700

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K K ++ K  ++ ++G  + G ++  A  IFE +  F +YGF +SHAA++A ++Y ++
Sbjct: 701  AWKRKGDLGKYHDQIVNGMLERGYTREFAEQIFEQIKGFGEYGFPESHAASFAKLAYASS 760

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------- 830
            W+K H P  F+AA +  +        +  QDAR+  + + P  V     +  +       
Sbjct: 761  WLKCHEPAIFVAALLNSQPMGFYAPAQLVQDARRHGVTVFPVDVTKSNWETSLEALPGAT 820

Query: 831  ---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               GD  +   L+ ++G G   AR I  A A  PF++++       ++   R +      
Sbjct: 821  PPEGDPAVRLGLSLVRGFGEAAARRIEAARAAGPFENVD--ALARRARLERRDLEALAAA 878

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
                   G+ R  L Q++                   ++ A      +++  L   S  +
Sbjct: 879  NALATLAGHRRDALWQAVAAAPDR-------------DLLAAAPIDEAERPALGAPSEAD 925

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +    +    G   + HP+ + +P LR   +    E      G   R   +V+++Q  
Sbjct: 926  EIL---ADYDTTGLTLNRHPVALLRPALRARRLSSAAELRDRPDGRLARACGIVIARQMP 982

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANF 1031
             T KG  + ++T  +         
Sbjct: 983  GTAKG--VLFMTLEDETGCVNVIV 1004


>gi|222148691|ref|YP_002549648.1| DNA polymerase III alpha chain [Agrobacterium vitis S4]
 gi|254777923|sp|B9JWL2|DNAE2_AGRVS RecName: Full=Error-prone DNA polymerase
 gi|221735677|gb|ACM36640.1| DNA polymerase III alpha chain [Agrobacterium vitis S4]
          Length = 1097

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1047 (26%), Positives = 465/1047 (44%), Gaps = 88/1047 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQV + +S L GA S   + +   +    AI + D N+L   +   + + A G++ 
Sbjct: 2    RYAELQVTTHFSFLRGASSAIELFETAKSLGIDAIGVVDRNSLAGIVRALEASRATGVRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC                +       SI++  +    Y RL  L++    L +G+   
Sbjct: 62   VVGC----------------RLDLQDGMSILVYPTDRTAYSRLARLIT----LGKGRGGK 101

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
              C+  L +I   G  +L       I      + +   +  L    ++FGD  Y++L  R
Sbjct: 102  DNCILMLDDIAQYGEGLLG------ILVPDLADDTCAVQ--LRKMAEVFGDLAYLSLCLR 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
             R  D+ R  ++  +A   ++  V TN+ LF      +  D++  + ++T +        
Sbjct: 154  RRPNDQLRLHELSNMATRFKVKTVVTNDVLFHEPGRRQLQDIVTCIRNNTTIDTVGFERE 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK   EM  +F    +AL  T+EI  RC F L+      P    +E    +K  
Sbjct: 214  RHADRYLKPPEEMERLFPRYRQALRRTMEIVDRCKFSLEELTYQYP----EEAIVPRKTA 269

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L +     +  R  QG   K        Q +  EL++I +MK++ YFL V   +++A
Sbjct: 270  QESLEHYVWQCVPDRYPQGLPPKT------LQIIRHELDLIHKMKYAPYFLTVFSIVRFA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A S   Y L +T IDP   +LLFERF++ +R   PD D+DF  +RR
Sbjct: 324  RAKGI-LCQGRGSAANSAVCYILGVTSIDPETNNLLFERFVSQERDEPPDIDVDFEHERR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+++   YG E+ A   T    +AK A+RDVG+AL +P   +  L   + +      
Sbjct: 383  EEVIQWIYKTYGKEKAALCATVNRYRAKGAIRDVGKALGLPEDLIKALSSGMWSWSQET- 441

Query: 488  SLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                   D   RE  L +P   RL   L+++Q+L G  RH   H  G V+    L  LVP
Sbjct: 442  ------SDRNVRELNL-NPDDRRLTLTLQLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVP 494

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +      D  + +++   +E    +K D L L  LT + K    + +     +DL+ I  
Sbjct: 495  IEPSTMEDRQIIEWDKDDVEALKFMKVDVLALGMLTCMSKVFALIREHKGDDLDLAKIRQ 554

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y
Sbjct: 555  EDKATYEMICKADTLGTFQIESRAQMAMLPRLKPKTFYDLVVQVAIVRPGPIQGDMVHPY 614

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R+  KE +    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M   K
Sbjct: 615  LRRREKKEDVDYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFK 674

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                + + KE+ +SG  KNG +   A   F  L  F  YGF +SHAA++A+I+Y + ++K
Sbjct: 675  FTGGVSRFKEKLVSGMVKNGYTPEFAEKTFSRLEGFGSYGFPESHAASFALIAYASNYVK 734

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNR 834
             H+P  F AA +  +        +   DAR   +++ P  VN    D  +        + 
Sbjct: 735  CHFPDVFCAALLNSQPMGFYAPAQIVGDARAHGVEVRPVCVNRSRWDCTLERIGTTQQHA 794

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +   +  +KG+       I+ A  + PFDS++D   R     +    L  L  A A    
Sbjct: 795  VRLGMRMVKGLVVADVARIVAARMNGPFDSVDDMWRR---SGVPAASLVELAHADAFQ-- 849

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--------SDKITLEKFSVE 946
                     SL   ++   W  K   ++   +FA                ++ L + +  
Sbjct: 850  --------PSLKLARRDVLWAIKALRDEPLPLFAAAAEREMKTIAEQNEPEVELRQMTKG 901

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            ++ V    +   +G     HP+   +  L K  I   EE++    G  +  A +V+ +Q+
Sbjct: 902  HNVV---EDYGHIGLTLRDHPIAFLRTDLAKRNIVTCEEAMTARDGRWVITAGLVLVRQK 958

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + KG  + ++T  +         +P
Sbjct: 959  PGSAKG--VMFITIEDETGPANIVVWP 983


>gi|110636133|ref|YP_676341.1| DNA polymerase III, alpha subunit [Mesorhizobium sp. BNC1]
 gi|110287117|gb|ABG65176.1| error-prone DNA polymerase, DnaE-like protein [Chelativorans sp.
            BNC1]
          Length = 1096

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/1036 (27%), Positives = 456/1036 (44%), Gaps = 67/1036 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQV S +S L GA S   +    A     A+ I D ++L   +   + A A GI+ 
Sbjct: 5    RYAELQVTSHFSFLRGASSAEELFAAAALMGIEALGIVDRSSLAGIVRAWEAAKATGIRL 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC                +       SI++  +    Y RL  L+S       GK   
Sbjct: 65   VIGC----------------RLDLACGASILVYPTDRAAYARLCRLLSLGKGR-AGKGKC 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
             +  + L       + +L    +                 RL   + +FGDR ++ L  R
Sbjct: 108  HLEWTDLARYAEGQIALLVPDEADETCTM-----------RLRRLRDVFGDRAHLALTLR 156

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
             R  D+ R  ++  LA    +  V TN+ LF         DV+ A+ H+T V     R  
Sbjct: 157  RRPNDQMRLHELSGLASRMGVACVVTNDVLFHEPGRRVLQDVVTAIRHTTTVDALGFRRE 216

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK+  EM  +F+  PEAL  TVEIA RC F L       P    +E DD     
Sbjct: 217  RHADRYLKSPEEMHRLFARYPEALARTVEIAERCRFSLDELVYQYP----EERDDPALSP 272

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L      G   R   G           R  L+ EL +IA++ ++ YFL V   +++A
Sbjct: 273  QQTLERLTWEGAASRYPDGL------PDTVRATLNHELGLIAQLDYAPYFLTVHSIVRFA 326

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A S   Y L +T IDP R  LLFERF++ +R   PD D+DF  DRR
Sbjct: 327  RSQGI-LCQGRGSAANSAVCYVLGVTSIDPDRNQLLFERFVSAERNEPPDIDVDFEHDRR 385

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+++   YG +R A   T    +AK ALRDVG+AL +P   +  L   +       V
Sbjct: 386  EEVIQWIYATYGRDRAALCCTVIRYRAKGALRDVGKALGLPEDLISTLSTQVWGWSEQEV 445

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              Q +          +AD  +   LE+++ L G  RH S H  G V+    L  LVP+  
Sbjct: 446  GPQHVDQ----LNLNMADRRLRLTLELARALIGFPRHLSQHPGGFVLTRDRLDDLVPIEP 501

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                     +++   I+   ++K D LGL  L+ ++++LD LA+   V +DL+ IP +D 
Sbjct: 502  AAMEARQTIEWDKDDIDALRMMKVDVLGLGMLSCMRRALDLLAEHKGVALDLASIPAEDP 561

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNR 664
             TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  R
Sbjct: 562  RTYAMIRRADTLGTFQIESRAQMSMLPRLKPRTFYDLVIEVAIVRPGPIQGDMVHPYLRR 621

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKE 723
            + G+E +    P ++ +L +T GV ++QEQ M +A   +G++  EAD LRR+M   K   
Sbjct: 622  REGREDVHYPKPELEAVLGKTLGVPLFQEQAMMVAVSCAGFTPGEADQLRRSMATFKFTG 681

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             + K +++ ++G   NG  +  A+  F+ L  F  YGF +SHAA++A+I+Y ++W+K  +
Sbjct: 682  GVSKFRDKLVAGMVANGYEEAFALATFKQLEGFGSYGFPESHAASFALIAYASSWVKCWH 741

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRIYY 837
            P  F  A +  +        +  +DAR   ++I P  +N+   D  +          +  
Sbjct: 742  PDVFACALLNSQPMGFYADAQIVRDARDHGVEIRPVCINSSRWDCTLEPTADESRFAVRL 801

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CFGY 896
             +  +KG+       I+ A  +  F S++D   R     +    L  L  A A    FG 
Sbjct: 802  GMRMVKGLPNRDVAAIVAAREELRFASVDDLWRRA---GVPTAALTRLAEADAFRPAFGL 858

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R + L ++  ++     +                      + L   +     V    + 
Sbjct: 859  ARREALWAIRPLRDEPLPLFAAAARHEP---EPAPELPEPPVRLRPMTDGREVV---EDY 912

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
               G     HP+   +  L +  I    +++    G  +  A +++ +Q+  + KG  + 
Sbjct: 913  GHTGLSLRAHPVSFLRADLARRRIVPCAQAMGARDGRWLETAGLILVRQRPGSAKG--VM 970

Query: 1017 WVTFSEPAKEYEANFF 1032
            +VT  + +       +
Sbjct: 971  FVTVEDESGIANIVVW 986


>gi|57867208|ref|YP_188839.1| DNA polymerase III, alpha subunit [Staphylococcus epidermidis RP62A]
 gi|81819374|sp|Q5HNK2|DPO3A_STAEQ RecName: Full=DNA polymerase III subunit alpha
 gi|57637866|gb|AAW54654.1| DNA polymerase III, alpha subunit [Staphylococcus epidermidis RP62A]
          Length = 1065

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/1024 (31%), Positives = 533/1024 (52%), Gaps = 81/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI 
Sbjct: 3    AHLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +        T             V+L    +G + L +L S + + ++      +
Sbjct: 63   GMTIYLTDGLYTIET-------------VVLAKNNQGLKSLYQLSSAIMMRNKE----EV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             + WL+      +I+        +      ++ +  ++            LY+N   +  
Sbjct: 106  PIEWLKRYDEHLIIIF---KEAELSHKQVIDAFEGKKE------------LYLNHNSNNT 150

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                R               V   ++ +L+E+D E    L A+  +T +      + T D
Sbjct: 151  LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKL-DLIHEKETLD 194

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +  +  E+ ++ +   + + N  EI   C   +  H  +LP+F+    +      ++ L
Sbjct: 195  EHFPSIEELQTL-NLSEDMITNANEIEELCQAEIAYHQSLLPQFVTPNGE----TSKDYL 249

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                +  L             + + Y  RL  E  +I  M F  YFLIV+D I +AK + 
Sbjct: 250  WTILIHRLRE--------WELNDKTYFNRLKHEYKIITDMGFEDYFLIVSDLIHFAKTHE 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDIDIDFEDTRREKVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     ++L+ 
Sbjct: 362  KYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKLIPHKLG--ITLEE 419

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                  F+     +   +R  E+S+KLEGL RH STHAAGI+I D+PL +  P+      
Sbjct: 420  AYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQPLFKFAPL--TTGD 477

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  IP+DD + + 
Sbjct: 478  TGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINIDIEAIPYDDKKVFD 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++   +
Sbjct: 538  LLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEISTYITRRHNPNQ 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+M IA  ++G+S  EAD+LRRAM KK +  ++ +++
Sbjct: 598  VAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAMSKKNRAILESERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A 
Sbjct: 658  HFIDGAKNNGYDEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K      +A+   I I+PP++N     +K  +  IY SL  IKG+G  + 
Sbjct: 718  ILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYLSLGTIKGIGYQSV 777

Query: 851  RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+ E   + P+    DF  R+  +  NR++LESL+  GA D FG +R  LLQ++D + 
Sbjct: 778  KLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGKTRATLLQAIDQVL 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 VE++       +F       + K + E+       +  + E+  LGFY S HP++
Sbjct: 838  DLNSDVEQDEM-----LF----DLLTPKQSYEEKEELPDQLLSDYEKEYLGFYISKHPVE 888

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                   K    G  +         I +       +Q +T+ G  + +VT ++     + 
Sbjct: 889  ---KKFEKKQYLGIFQLSNGSHYQPILV--QFDHIKQIRTKNGQNMAFVTMNDGRTMMDG 943

Query: 1030 NFFP 1033
              FP
Sbjct: 944  VIFP 947


>gi|258592047|emb|CBE68352.1| Error-prone DNA polymerase [NC10 bacterium 'Dutch sediment']
          Length = 1062

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/1044 (28%), Positives = 477/1044 (45%), Gaps = 63/1044 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            L  S S+  L   S +S LEGA   + ++++       A+A+TD + ++  +    KA  
Sbjct: 13   LMASHSYTPLWCKSHFSFLEGASHPDELVEEAHRLGLKALALTDRDGVYGIVRAHVKARE 72

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+  I+G Q+ +     ++ T  G +       +VLL    +GY  L  L++   L   
Sbjct: 73   LGLHLIVGAQVALA-DLPVRRTQTGHSI------LVLLAQDRDGYSNLCRLITTGRLRSP 125

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K    +  + + +    GLI L GG                 ++     + +FGDRLY 
Sbjct: 126  -KGESSVTWNEVCQ-HAGGLIALWGGEQS------LRTGEADPDEVAGQLRDVFGDRLYA 177

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L RHR  D  R E+++   A  + LPLVA    L+ ++      D L A+ H   VS  
Sbjct: 178  FLARHRQADEVRTEARLRARAARYGLPLVAATEVLYHTQIRRPLQDTLTAIRHGVAVSTA 237

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  +   +H LK+  +  ++F+D P A+  T E+A RC+F L       P         
Sbjct: 238  GRRLKPNAEHDLKSPHDFAALFADDPAAIARTEEVAGRCAFSLAELRYRYPSERLPNG-- 295

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                    LR     G   R        G    D  ++L+ EL +I  +++ GYFL + +
Sbjct: 296  --TTSSQRLRQLTFEGARRRY------DGEVPPDVLRQLETELALIDALEYPGYFLTMWE 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +Q+ ++  I +  GRGS A S   Y L IT IDP+R  LLFERF++ +R   PD D+D 
Sbjct: 348  IVQFCRQRGI-LCQGRGSAANSAVCYCLGITAIDPVRMGLLFERFISKERAEPPDIDLDI 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+EVI++V + YG    A +      + ++A+RDVG+AL +P + +DRL KL+ + 
Sbjct: 407  QHNRREEVIQHVYDTYGRSHAAMVANVIRYRPRSAVRDVGKALGLPETSMDRLAKLLSHH 466

Query: 483  PAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                       +    R+A L    P    LL +S ++    RH S H  G ++G  P+ 
Sbjct: 467  GDI--------EPEALRQAGLDPETPLHRHLLRLSSEILETPRHLSIHPGGFLLGHDPIW 518

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLS 599
             +VP+         V Q++   +E  GL K D LGL  L+ L      L   RG+ +D++
Sbjct: 519  TIVPVENATMPGRTVIQWDKDDLEALGLFKVDLLGLGALSHLDLCFRLLKHHRGLDLDMA 578

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DN 657
             IP +D  T+ ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 579  GIPPNDPSTFEMIQRADTVGVFQIESRAQMAMLPRLRPRSFYDLVIEVSIVRPGPIAGGM 638

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +  Y  R+ G+E ++  HP + P+L++T GV ++QEQVM++A + + Y+  EAD LRR M
Sbjct: 639  VHPYLRRRRGEEPVLYPHPSLQPVLEKTLGVPLFQEQVMRLAMIAADYTPGEADQLRRDM 698

Query: 718  GKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
                    +++ +ER IS     GI+   A  +F  +  F +YGF +SHAA++A+I+Y T
Sbjct: 699  AAWRGPGRIERHRERLISRMQTKGIAAEFAERVFSQIQGFGEYGFPESHAASFALIAYAT 758

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD---- 832
            AW+K HYP EF  A +  +           +DA++  + + P        D  +      
Sbjct: 759  AWLKRHYPAEFTCALLNAQPMGFYVPATIVEDAKRHGLLVRPVDAQASTWDCTLEPCPQS 818

Query: 833  ---NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                 I   L  +KG+       I +A    PF SL DF  R     L++  L  L  AG
Sbjct: 819  AAGFAIRMGLRYVKGLREGDWNRIEQARHIAPFTSLADFSRRT---GLDKGALTVLAEAG 875

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A + FG S       LD  ++ A W      ++   +             L    V   +
Sbjct: 876  AFEGFG-SVGTAQDRLD--RRMALWGALGCQSEVTPL---PTVVQEASPALTPLGV---A 926

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 + R       GHPL   +  L+   +K      +   G+ +R A +V+ +Q+  T
Sbjct: 927  EEIAWDYRRTDHSPRGHPLAPLRKALQAQSLKDARTIASMRHGSRVRYAGLVICRQRPGT 986

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
              G  + ++T  +         +P
Sbjct: 987  ASG--VTFMTLEDETGFVNLVLWP 1008


>gi|190892912|ref|YP_001979454.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
 gi|190698191|gb|ACE92276.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
          Length = 1087

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/1041 (25%), Positives = 469/1041 (45%), Gaps = 78/1041 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV + +S L GA S + +          A+ + D N+L   +   + + A G++ +
Sbjct: 3    YAELQVTTHFSFLRGASSADELFATAKELGIDAVGVVDRNSLAGIVRALEASRATGVRLV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC                +       SI++  +    Y RL  L++    L +G+    
Sbjct: 63   VGC----------------RLDLQDGMSILVYPTNRAAYSRLTRLLT----LGKGRGGKD 102

Query: 131  ICLSWLQE--IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             C+  L +  +  EGL+ +                      +L    ++FG+R YV+L  
Sbjct: 103  NCILHLDDVALYAEGLLGILVPDLPD----------DTCAVQLRKMSEIFGNRAYVSLAL 152

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
            R R  D+ R  ++  LA T ++  V TN+ LF      +  DV+  + ++T + +     
Sbjct: 153  RRRPNDQLRLHEISNLAATFKVRTVVTNDVLFHEPGRRQLQDVVTCIRNNTTIDEVGFER 212

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                D YLK   EM  +    PEAL  T+EI  RC F L       P        D Q+ 
Sbjct: 213  ERHADRYLKPPEEMERLLPRYPEALARTMEIVERCKFSLDELTYQYPEEAIVPGMDAQQS 272

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+ +R      + +R  +G   K        + +  EL++I  MK++ YFL V   +++
Sbjct: 273  LEHYVR----ECIPIRYPEGLPRK------VLRAVRHELDLIKEMKYAPYFLTVFSIVKF 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +R
Sbjct: 323  ARSQGI-LCQGRGSAANSAICYILGITSIDPETNDLLFERFVSKERDEPPDIDVDFEHER 381

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R++VI+++   YG ++ A   T    +AK A+RDVG+AL +P   +  L   +       
Sbjct: 382  REQVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLPEDVIKALSSGMW------ 435

Query: 487  VSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             S      D   RE  L +P   RL   L+++++L G  RH   H  G V+    L  LV
Sbjct: 436  -SWSEELPDRNIRELNL-NPDDRRLALTLKLARQLMGAPRHLGQHPGGFVLTHDRLDDLV 493

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602
            P+      D  + +++   +E    +K D L L  LT + K+ D +   +   +DL+ IP
Sbjct: 494  PIEPATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMNKAFDLIRDHKDEDLDLATIP 553

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
             +D  TY ++    TLG FQ+ES      L  ++P+   D++  V++ RPGPI    +  
Sbjct: 554  QEDAATYAMIRKADTLGTFQIESRAQMSMLPRLKPETFYDLVIQVAIVRPGPIQGNMVHP 613

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+ GKEK     P ++ +L  T GV ++QE  M++A + +G++  EAD LR++M   
Sbjct: 614  YLRRREGKEKPEYPTPELEAVLGRTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATF 673

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    + + K++ +SG  KNG S   A   F  L  F  YGF +SHAA++A+I+Y + ++
Sbjct: 674  KFTGGVSRFKDKLVSGMIKNGYSPEFAEKTFGQLEGFGSYGFPESHAASFALIAYASNYV 733

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDN 833
            K H+P  F AA +  +        +   DA+   +++ P  +N    D  +        +
Sbjct: 734  KCHFPDVFCAALLNSQPMGFYAAAQIVGDAKNHGVEVRPVCINKSRWDCTLERIGSGERH 793

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-D 892
             +   +  ++G+    A  I+ A  ++ F+S++D   R     +    L+ L  A A   
Sbjct: 794  AVRLGMRMVRGLAVADAARIVAARMNREFESVDDVWRR---SNVPTEALDQLAEADAFLP 850

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                 R   + ++  +++    +      +   +   ++     ++ L + +  ++ V  
Sbjct: 851  SLKLQRRDAIWAIKALREAPLPLFAAAAEREVKVIPEQQ---EPEVRLRQMTEGHNVV-- 905

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +   +G     HP+   +  L+K  I    E++    G  +  A +V+ +Q   + KG
Sbjct: 906  -QDYGHVGLTLRDHPITFLRRDLQKRNIVTCSEAMNARDGRWLMAAGLVLVRQMPGSAKG 964

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + ++T  +         +P
Sbjct: 965  --VMFITIEDETGPANIVVWP 983


>gi|254482564|ref|ZP_05095803.1| DNA polymerase III, alpha subunit subfamily, putative [marine gamma
            proteobacterium HTCC2148]
 gi|214037255|gb|EEB77923.1| DNA polymerase III, alpha subunit subfamily, putative [marine gamma
            proteobacterium HTCC2148]
          Length = 1031

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/1035 (25%), Positives = 455/1035 (43%), Gaps = 73/1035 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  L   S YS L  A   + ++++ A     A+AITD  +L   ++    A  AG++ 
Sbjct: 3    NYSELHCLSCYSFLRSASHPHELVERAAQLGYGALAITDECSLAGVVKAHVAAKEAGLKL 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  ++                    +V L  +   Y  L  L+S         +  
Sbjct: 63   IIGSEFKLEEGIR----------------LVALAPSRAAYSELSGLISMARRRSPKGEYR 106

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
                  +  +    LI L              ++    +       +L  +R+++ +   
Sbjct: 107  ANLRDVIFHLKRCLLIWLP------------RDNDDHDKAYGQQLARLCKNRIWLGVSHL 154

Query: 190  RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             G D  R       LA    +PLVA  +           HDV  A+ ++T V+Q  R R+
Sbjct: 155  LGNDEARHFENTSALATALNIPLVACGDVRMHLASRKPLHDVFTALHYNTSVAQLGRRRL 214

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 +L++   +  ++   PE +  T  I  RC+F L       P  +  +        
Sbjct: 215  GNSQQHLRSLERIHQLYP--PELILETERIVSRCNFSLDELRYEYPEEVVPQG----HSA 268

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR     G + R   G        +  +QR+D EL +I  + +  YFL V D + +A
Sbjct: 269  NSYLRQLVDEGSKRRWPTGT------PEPVQQRIDRELELIDELNYEYYFLTVYDIVDFA 322

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +I +  GRGS A SV  Y L IT++ P + SLLFERF++ +R   PD D+DF  +RR
Sbjct: 323  RSRDI-LCQGRGSAANSVVCYCLGITEVSPEQISLLFERFISKERDEPPDIDVDFEHERR 381

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KY   R A   T  + ++++A+RDVG+AL +    VD L K +        
Sbjct: 382  EEVIQYIYRKYSRRRAALAATLITYRSRSAVRDVGKALGLDPVFVDDLAKSLAWWDRTAD 441

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +   +    +         D    + Q++ G  RH S H  G VI   P+S LVP+  
Sbjct: 442  LSKRFEE----QGVAGHSQQADLFYNLVQQILGFPRHLSQHVGGFVITRSPISTLVPVEN 497

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDH 606
               ++  V Q++ + IE  GL+K D L L  L+ ++KSL  + +       +S IP +D 
Sbjct: 498  ASMAERTVIQWDKEDIESLGLLKVDILALGMLSAIRKSLQMVHRYNPAIATVSDIPKEDA 557

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNR 664
             TY +L    T G+FQ+ES      L  ++P+C  D++  +++ RPGPI  D +  Y  R
Sbjct: 558  ATYQMLQQADTTGVFQIESRAQMSMLPRLKPECFYDLVIQIAIVRPGPIQGDMVHPYLRR 617

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723
            K G E I      I  +L+ T GV I+QEQV+++A + +G+S  EAD LRRA+    +  
Sbjct: 618  KQGLEVITYPSEEIKGVLERTLGVPIFQEQVIRLAMVAAGFSGGEADQLRRAIANWGRNS 677

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            ++   +++   G  + G  +  A  +F+ +  FA YGF +SH+A++A+++Y ++W+K H+
Sbjct: 678  KLLGFEQKLTQGMIERGYDEDFARRLFDQIKGFAGYGFPESHSASFALLAYISSWLKRHH 737

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI------YY 837
            P  F A  +  +        +  QDAR+  +  +P  VN    D ++ D           
Sbjct: 738  PAAFFAGLLNSQPMGFYSASQLLQDARRHGVVALPIDVNQSDWDHQLLDQHRGTNKPVRL 797

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  +KG+    A+ ++E     PF  + D   R      ++R +E+L  A AL      
Sbjct: 798  GLRLVKGLSRGGAQRVVEGRQQSPFRQISDLRRRAQL---DKRDMEALADADALVSLSGH 854

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R Q    +  +       E+ R    +  F +    F+DK+ L   +V    +    + R
Sbjct: 855  RHQSQWQIMAL-------EEARPLLQDEQFQNAHY-FNDKVQLPAPAVAEEVLS---DYR 903

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G     HPL + +        K   +         +R+A +V  +Q+  +  G  + +
Sbjct: 904  ATGLTLRAHPLSLLRDQAPFNRCKKQVDLPHLGNHRFVRIAGLVTCRQRPGSASG--VLF 961

Query: 1018 VTFSEPAKEYEANFF 1032
            +T  +         +
Sbjct: 962  LTLEDETGNSNVVVW 976


>gi|269836260|ref|YP_003318488.1| DNA polymerase III, alpha subunit [Sphaerobacter thermophilus DSM
            20745]
 gi|269785523|gb|ACZ37666.1| DNA polymerase III, alpha subunit [Sphaerobacter thermophilus DSM
            20745]
          Length = 1095

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/1058 (29%), Positives = 498/1058 (47%), Gaps = 70/1058 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   +V L +H++YS L+GA     I+ + +     A+AITD + L  A+EF+Q A A
Sbjct: 1    MGREHRYVELHLHTAYSFLDGASLPEEIIARASELGYRALAITDHDGLHGAMEFAQLARA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            A IQPI G +L +                     + LL  +  GY  L  L++  +   +
Sbjct: 61   ADIQPITGAELTLADGS----------------HLTLLAESVTGYGNLCRLITAAHHAGE 104

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
             +   R+    L     EGLI+LTG   G + R         AE  L  + + F  + + 
Sbjct: 105  DR-VPRLDPDLLPR-HAEGLILLTGCRQGALARLVDAGDLAGAEGLLRRYVEWFGAENVV 162

Query: 184  VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            V LQ++  Y D  R   +V+LA    L   AT N  +   E +   DVL+A+   T +  
Sbjct: 163  VELQQNLVYGDTRRVRLLVELAERLGLRYAATGNVHYHRPERHRLQDVLVAIRERTTLDG 222

Query: 243  KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FIL-QVHAPILPRFIEKE 299
              R R    + YL+   E+  +F   P ALE T+EIA RC+ F L +  A   P +    
Sbjct: 223  AHRARRANAEFYLRAAEEVAVLFDRYPAALEATLEIAERCAGFDLTRDLAYRFPDYPTAP 282

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +      ++ L       L  R  +        A+   +       +IAR + +G+FL+
Sbjct: 283  GE----TPDDLLARICREALAERYPEPERRAAAEARLAEEL-----RLIARHRLAGFFLL 333

Query: 360  VADFIQWAKK--------------NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
              D +  A++               N+P G GRGS   S+  Y + ++ +DPL   L   
Sbjct: 334  YRDLLLLAQEVAAEVRGTDTPRAGGNLPPGRGRGSSVSSIVCYLIGLSHVDPLAHGLFLG 393

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLN D  S+PD D+DF +D R+ +I  V   YG E  A +  F + + ++A+RD+G+AL
Sbjct: 394  RFLNEDLRSVPDIDLDFPRDIRERLIERVYEVYGPEHAALVCAFSTYKLRSAVRDIGKAL 453

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
             +P   +D++ KL     A  +  + +A    F   R A P +  L+E++++L G  RH 
Sbjct: 454  GLPQPDIDKIAKLSEARSAKDLG-EELARIPEFAARRDA-PPLRYLVELAEELAGFPRHV 511

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            + H  G+++   PL +LVP+         + Q++    + A  IK DFL L  L+L+++ 
Sbjct: 512  TQHVGGMIVSSSPLVELVPIQPAAMPGRYLCQWDKDSCDDARFIKIDFLALGMLSLVEEC 571

Query: 586  LDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            L+ +       VDLS I F D   Y ++    T+G+FQ+ES    Q L   QP  +ED+I
Sbjct: 572  LELIVRSGKPPVDLSRIDFADPAVYDMICAGDTIGVFQIESRAQIQMLPRTQPRSLEDLI 631

Query: 645  ALVSLYRPGPIDN--IVVYN-----NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
              V++ RPGPI    +  Y        +N +  I   HP ++P+L+ET GVI+YQEQV++
Sbjct: 632  VQVAIVRPGPIVGKAVNPYVQNRQRRMRNPRAPIRYDHPSLEPVLEETLGVILYQEQVLE 691

Query: 698  IAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            +A +L+G++  +A+ LRRAM  K+ +E M     +F  GA   G+   +A  +F  L  F
Sbjct: 692  VAMVLAGFTAGQAEALRRAMSRKRSREAMLHFWRQFRDGALARGVRLEVAKEVFRKLLGF 751

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A+YGF KSH+AA+AV++YQ+AW++ +YP EF  A    +            DA++  ++I
Sbjct: 752  AEYGFPKSHSAAFAVLAYQSAWLRCYYPTEFTCALFNNQPMGFYPPHVIVNDAKRHGVRI 811

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSK 875
            +PP VN       V  N +      ++G+G   A  I  E  A+ P+ SL DF  RV   
Sbjct: 812  LPPDVNQSGARCTVEGNAVRIGFGYVQGIGEDAALLIEREREANGPYRSLADFVRRVPLA 871

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
               R  +E+L+  GA D FG  R + L  L        + +     K   +         
Sbjct: 872  ---REAVENLIVVGAFDGFGLGRREALWQLGLFIPARGFGKNGAAGKQLPL---ALPVEQ 925

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
            D + L   S      +   +   LG     HPL + +P L +  I    +      G  +
Sbjct: 926  DMVELRPMSAW---EQMAADYDTLGLSPRYHPLGLLRPHLPE-AIVSTVDLAEIPDGTEV 981

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            R+A +VV +Q+  T KG  I ++   +         +P
Sbjct: 982  RVAGLVVCRQRPGTAKG--ITFLLLEDERGLVNVIIYP 1017


>gi|167585392|ref|ZP_02377780.1| error-prone DNA polymerase [Burkholderia ubonensis Bu]
          Length = 1067

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/1053 (26%), Positives = 455/1053 (43%), Gaps = 64/1053 (6%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +    +  P +V L   S++S L GA     ++++        IAITD  +L  A     
Sbjct: 1    MAAEFKVLPDYVELFCRSNFSFLHGASHAEELVERAVELGYRGIAITDECSLAGAPRMHV 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A A G+  I+G   ++   D     + G  P P    +VLL    EGY  L EL+S   
Sbjct: 61   AAKAKGLPLIVGAYFEVTPDD----VSPGHDPGPGAFGLVLLAQNREGYGNLSELISWRR 116

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            +    K + R+    L     E   +        I    +   + V + ++  F+  FG+
Sbjct: 117  MASP-KGTYRLTARMLSRPPEEFAHLRGMPDCFAILVPAYPVRADVLDAQVAWFRATFGE 175

Query: 181  RLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R  + L Q  R  D  +  ++       E+ +VA  +            D + A+     
Sbjct: 176  RARLGLVQLQRALDGAQREEIRMAGARREVRVVALGDVTMHRRSCKRLQDTMTAIRLGMP 235

Query: 240  VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            VS+         + +L+ R ++  +FS  P+ +  T  I   C F L       P  I  
Sbjct: 236  VSECGYALAPNAEQHLRWRRQIAQLFS--PDEIAQTCAILDACHFELDSLRYEYPDEIVP 293

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +         + L  +  AG   R  QG   K        +++  EL++IAR+ +  +FL
Sbjct: 294  KG----HTPTSYLEQETRAGAAERYPQGVPEK------VEKQIRHELDLIARLSYEPFFL 343

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
             V D +++A+  NI +  GRGS A SV  Y L IT+++P + ++LFERF++ +R   PD 
Sbjct: 344  TVYDIVKYARSQNI-LCQGRGSAANSVVCYCLGITEVNPEQSTMLFERFISAERGEPPDI 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF   RR+EVI+++  KYG +R A      + + +  LR+ G+AL +    +DR+ K 
Sbjct: 403  DVDFEHQRREEVIQHIYRKYGKDRAALAAAVSTYRPRGVLRETGKALGVDPMLIDRVAKG 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                      LQ  A            P +    +++ +L    RH S H+ G VI    
Sbjct: 463  HRWFDGSRDLLQQFAAVG----LDPDTPLIRAWADLAARLLNFPRHLSQHSGGFVISRGK 518

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGV--- 594
            L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ D   A RG    
Sbjct: 519  LTRLVPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPPEP 578

Query: 595  ---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                  L  IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ R
Sbjct: 579  DGKPFTLKHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRTYYDLVIEVAIVR 638

Query: 652  PGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGPI       Y  R+ G EK+      + P L+ TQGV I+QEQVMQ+A + +G++  E
Sbjct: 639  PGPIQGGAVHPYLKRRQGLEKVSYPKEDLKPALERTQGVPIFQEQVMQVAMIAAGFTPGE 698

Query: 710  ADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD LRRAM   K K  ++K   + + G  +       A  IFE +  F DYGF +SHAA+
Sbjct: 699  ADELRRAMAAWKRKGNLEKYHRKIVDGMRERDYPPEFAEQIFEQIKGFGDYGFPESHAAS 758

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +A ++Y ++W+K H P  FLAA +  +        +  QDA++  +Q++P        + 
Sbjct: 759  FAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHGVQVLPIDATKSGWEA 818

Query: 829  KV----------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
             +          G   +   L+ ++G+G   AR I  A A  PF++++    R   ++  
Sbjct: 819  SLEALPGQPRPHGQPAVRLGLSLVRGLGEAAARRIEAARAAGPFENVDALARRAQLER-- 876

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            R +             G+ R  L Q++                   ++ A       D+ 
Sbjct: 877  RDLEALAAANALATLAGHRRDALWQAV-------------AAAPERDLLAAAP---IDEP 920

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
             +      + +     +    G   + HP+ + +P LR+  +    E      G   R  
Sbjct: 921  EMPALGAPSEADDVLADYHTTGLTLNRHPVALLRPALRERRLLSAAELRDRPDGRLARAC 980

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             +V ++Q   T KG  + ++T  +         
Sbjct: 981  GLVTARQMPGTAKG--VMFMTLEDETGCVNLIV 1011


>gi|254516583|ref|ZP_05128642.1| putative DNA polymerase III alpha subunit subfamily [gamma
            proteobacterium NOR5-3]
 gi|219675006|gb|EED31373.1| putative DNA polymerase III alpha subunit subfamily [gamma
            proteobacterium NOR5-3]
          Length = 1036

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1039 (27%), Positives = 470/1039 (45%), Gaps = 73/1039 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L   S YS L GA     ++ + AA    AIAITD  +L   ++    A    IQ 
Sbjct: 2    PYCELHCLSCYSFLRGASRPEELVAQAAASGYTAIAITDECSLAGVVKAHVAAREHNIQL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +                     +V L      Y  L  L+S        K   
Sbjct: 62   IIGSEFKLSEG----------------IHLVALAPNRTAYGELSGLISLGRRRSP-KGEY 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + L  +       L++        I+R +                +L  +R+++ +Q  
Sbjct: 105  EVTLRDVIFHLKRCLLIWLPKDDSEINRGYGK-----------QLARLCRERVWIGVQYL 153

Query: 190  RGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
             G D  R  + +Q LA   +LPL+A  +           HDV+ A+ ++  V++   R  
Sbjct: 154  LGNDEIRRYRALQSLASALQLPLLACGDVQMHCATRKPLHDVMTALRYNCSVAELGSRRL 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 +L++ +++  ++      LE T+ +ARRC F L       P  +  +  + +   
Sbjct: 214  PNAQQHLRSINQLERLYPR--SLLEETLNVARRCQFSLSELRYEYPEEVVPKGHNAR--- 268

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR     G   R   G           RQR++ EL +IA + +  YFL V D +++A
Sbjct: 269  -DYLRELTWQGANQRWPDGT------PSVIRQRIEKELALIAELDYEYYFLTVYDIVRFA 321

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A SV  Y L IT++ P + SLLFERF++ +R   PD D+DF  +RR
Sbjct: 322  RDRGI-LCQGRGSAANSVVCYCLFITEVSPEKISLLFERFISRERDEPPDIDVDFEHERR 380

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+ +KY   R A   T  + +A++A+RDVG+AL +    VD L K +        
Sbjct: 381  EEVIQYIYDKYSRRRAALAATVITYRARSAVRDVGKALGLDPIFVDDLAKSL-AWWDKQR 439

Query: 488  SLQAIADDSRFREARLAD-PSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             L+A   +   +  +  D P+  +L  ++ Q++ G  RH S H  G VI   P+SQLVP+
Sbjct: 440  DLEARFSEHGLKTGQQDDKPNTAQLFYQLVQEILGFPRHLSQHVGGFVISRGPISQLVPV 499

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFD 604
                 +D  V Q++   IE  GL+K D L L  L+ ++KSL  + +   +   L  IP +
Sbjct: 500  ENASMADRTVIQWDKDDIEALGLLKVDILALGMLSAIRKSLALVHRYDPRIRQLQDIPAE 559

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D  TY +L    ++G+FQ+ES      L  ++P C  D++  +++ RPGPI  D +  Y 
Sbjct: 560  DMATYRMLQRADSIGVFQIESRAQMSMLPRLKPACFYDLVIEIAIVRPGPIQGDMVHPYL 619

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R+ G E I      +  +L+ T GV I+QEQV+++A + +G++  EAD LRRA+    +
Sbjct: 620  RRRQGLESISYPDEAVKSVLERTLGVPIFQEQVIRLAMVAAGFTGGEADQLRRAITNWGR 679

Query: 723  -EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              ++   +++   G    G S+  A  +FE +  F  YGF +SH+A++A+++Y ++W+K 
Sbjct: 680  NSKLLSFEKKLTDGMLSRGYSEDYAQRLFEQIKGFGGYGFPESHSASFALLAYVSSWLKC 739

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI------ 835
            H+P  F    +  +        +  QDAR+  +  +   VN    D ++ D+        
Sbjct: 740  HHPGAFYVGLLNSQPMGFYTPSQLIQDARRHGVITLAADVNHSDWDHQLLDDGEQGTGAP 799

Query: 836  -YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
                L  IKG+    AR I  A    P+  + D   R +    NRR +E+LV A AL   
Sbjct: 800  IRLGLRLIKGLSKDAARRISAARRHSPYRQIADLRKRAEL---NRRDMEALVDADALVSL 856

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
               R Q    +    + A+ + +        +        SD + L + ++  S +    
Sbjct: 857  SGHRHQARWQV-MALEPARPLLEYEQQATGALL-------SDDVCLPEPAIAESVI---A 905

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            + R  G     HPL + +        K  ++  A   G  +R+A +V  +Q+  T  G  
Sbjct: 906  DYRSTGVTLRAHPLALLRGQAPFNSCKRQQDLAALNDGRFVRIAGLVTCRQRPGTASG-- 963

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + ++T  +         +P
Sbjct: 964  VLFLTLEDETGNNNVVVWP 982


>gi|115352937|ref|YP_774776.1| error-prone DNA polymerase [Burkholderia ambifaria AMMD]
 gi|115282925|gb|ABI88442.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria AMMD]
          Length = 1071

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/1049 (26%), Positives = 458/1049 (43%), Gaps = 68/1049 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASHAEELVERAAELGYRGIAITDECSLAGAPRMHVAAKAQGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G   ++   +       G  P P    +VLL    EGY  L EL+S   +    K +
Sbjct: 69   LIVGSFFEVTPDE----VTPGHDPGPGAFGLVLLAQNREGYGNLSELISWRRMASP-KGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             R+    L     E   +        I    +   + V + ++  F+  FG R  + L Q
Sbjct: 124  YRLTSRMLSAPPAEFAHLRGMPDCFAILVPTYPVRADVLDAQVAWFRATFGARARLGLVQ 183

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D  +  ++        + +VA  +            DV+ A+     VS+     
Sbjct: 184  LQRPLDGAQREEIRAAGERRGVRIVALGDVTMHRRSCKPLQDVMTAIRVGMPVSECGYAL 243

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  +  +FS  PE L+ T  I   C F L       P  I  +       
Sbjct: 244  APNAEQHLRARGRIAKLFS--PEELDETCAILDACDFKLDSLQYEYPDEIVPKG----LT 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L  +  AG   R  QG   K        +++ +EL++IAR+ +  +FL V D +++
Sbjct: 298  PTRHLEQETFAGAAARYPQGIPEK------VERQIRYELDLIARLSYEPFFLTVYDIVKY 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  NI +  GRGS A SV  Y L IT+++P + ++LFERF++ +R   PD D+DF   R
Sbjct: 352  ARSQNI-LCQGRGSAANSVVCYCLGITEVNPEQSTMLFERFISEERGEPPDIDVDFEHQR 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+++  KYGH+R A      + + +  LR+ G+AL +    VDR+ K         
Sbjct: 411  REEVIQHIYKKYGHDRAALAAAVSTYRPRGVLRETGKALGVDPMLVDRVAKAHRWFDGSR 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              LQ  A          A P +    E++ +L    RH S H+ G VI    L++LVP+ 
Sbjct: 471  DLLQQFASTG----LDPATPIIRAWAELAGRLLNFPRHLSQHSGGFVISRGKLTRLVPVE 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVD-----LSL 600
                    V Q++   +E  GL+K D L L  L+ L ++ D   A RG + D     L  
Sbjct: 527  NAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPQEDGQPFTLKH 586

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI-- 658
            IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI     
Sbjct: 587  IPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLKPRNYYDLVVEVSIVRPGPIQGGAV 646

Query: 659  VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              Y  R+  +      +I      +  +L+ T GV I+QEQVMQIA + +G++  EAD L
Sbjct: 647  HPYLKRRRIQAGEEEGEITYPSDALRVVLERTLGVPIFQEQVMQIAIVAAGFTPGEADRL 706

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM   K + ++    ++ ++G  + G ++  A  IFE +  F +YGF +SHAA++A +
Sbjct: 707  RRAMAAWKRRGDLGPYHDKIVNGMLERGYTREFAEQIFEQIKGFGEYGFPESHAASFAKL 766

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD----- 827
            +Y ++W+K H P  FLAA +  +        +  QDA++  +Q++P  V     +     
Sbjct: 767  AYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHGVQVLPIDVTLSNWEASLEA 826

Query: 828  -----FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                    G   +   L+ ++G+G   AR I  A A  PFD+++    R   ++  R + 
Sbjct: 827  LPDQPPPHGQPAVRLGLSLVRGLGEAAARRIEAARAAGPFDNVDVLARRAQLER--RDLE 884

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
                    +   G+ R  L Q++                   ++ A       +K  L  
Sbjct: 885  ALAAANALVTLAGHRRDALWQAV-------------AAAPERDLLAAAPIDEPEKPALGA 931

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             S  +  +    +    G   + HP+ + +P LR   +    E      G   R   +V 
Sbjct: 932  PSEADDIL---ADYDTTGLTLNRHPVALLRPALRAQRLSSAAELRDRSDGRLARACGIVT 988

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            ++Q   T KG  + ++T  +         
Sbjct: 989  ARQMPGTAKG--VMFMTLEDETGCVNVIV 1015


>gi|288957250|ref|YP_003447591.1| DNA polymerase III subunit alpha [Azospirillum sp. B510]
 gi|288909558|dbj|BAI71047.1| DNA polymerase III subunit alpha [Azospirillum sp. B510]
          Length = 1043

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1036 (27%), Positives = 453/1036 (43%), Gaps = 76/1036 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQV +S+S LEGA   + +    AA    A+ +TD N+L   ++    A   GI+P
Sbjct: 3    RYAELQVATSFSFLEGASQPDELALTAAALGLAAVGVTDRNSLAGVVQMHVAARKLGIRP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC         L +T+ G         ++   +    Y RL  L++         +  
Sbjct: 63   LIGC--------RLDLTDAGG--------LLAYPTDRAAYARLSRLLTLGKRRAPKGECF 106

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
                  L        ++L+                            L   +L++     
Sbjct: 107  IARADVLAHAEGMLFLLLSPDRRDESFLRELR----------AWRGGLARGQLFLAASHR 156

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
            ++G D  R   +  LA    +PLVATN+ L+         DV+  + H T + +   R  
Sbjct: 157  YQGDDSRRLRWLAGLAEAEGVPLVATNDVLYHGAGRRALADVMTCIRHHTSIDEAGWRLC 216

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + +LK   EM  +F D PEA+  T EIA  C F L       P  + +      ++ 
Sbjct: 217  ANAERHLKPAVEMARLFRDHPEAVARTAEIADACRFSLDELRYEYPDEVAE-----GRDP 271

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L      G   R   G           RQ ++ EL +IA  +++ YFL V D + +A
Sbjct: 272  QETLVTLTWEGAAKRYPAGI------PDPVRQTVERELALIADRRYAPYFLTVHDIVNFA 325

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +K +I +  GRGS A S   Y L IT +DP    LLFERF++  R   PD D+DF  +RR
Sbjct: 326  RKQDI-LCQGRGSAANSAVCYCLGITSVDPTEVDLLFERFISAARDEPPDIDVDFEHERR 384

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG +R     T    +A++ALR+VG+A+ +    V RL   I       V
Sbjct: 385  EEVIQYIYRKYGRDRAGLTATVIRYRARSALREVGKAMGLSADLVARLTGSIWGWSGQGV 444

Query: 488  SLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                  D+ R R   L   DP + R LE++Q+L G  RH S H  G VI   PLS L P+
Sbjct: 445  ------DEERARSLGLDPDDPRLRRTLELAQELTGFPRHLSQHVGGFVITRGPLSDLCPV 498

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
                  D    +++   I+  G++K D L L  LT + ++ D + +  G +  L+ IP +
Sbjct: 499  ANAAMEDRTTIEWDKDDIDALGILKVDVLALGMLTCIHRTFDMIERLHGTRWTLATIPQN 558

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
            D   Y +L    +LG+FQ+ES      L  ++P C  D++  V++ RPGPI   +   Y 
Sbjct: 559  DPAVYGMLGRADSLGVFQVESRAQMSMLPRLKPTCFYDLVIEVAIVRPGPIQGGMVHPYL 618

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R++G E +    P ++P+L  T GV ++QEQ M++A + +G+S  EAD LRRAM   + 
Sbjct: 619  RRRSGAEPVTYPMPRLEPVLHRTLGVPLFQEQAMKVAMVGAGFSGEEADQLRRAMAAFRK 678

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              ++ +  ++FI+G + NG     A   F+ +  F +YGF +SHAA++A++ Y +AW+K 
Sbjct: 679  TGQVRRFHDKFIAGMTANGCDAAFAERCFQQIEGFGEYGFPESHAASFALLVYVSAWIKR 738

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYY 837
            H+P  F AA +  +        +  +DAR+  + ++PP VN    D  V        +  
Sbjct: 739  HHPAIFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPPDVNLSGWDCAVEAGETGLTLRL 798

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  I+GV    A  I+ + A   +    D   R          LE L  A A    G  
Sbjct: 799  GLRLIRGVTEDHADAIVLSRAGG-YRDPYDLWRRARL---PVATLEKLARADAFRSVGLD 854

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R   L ++           +   +    +FA   G  + +                 +  
Sbjct: 855  RRAALWAV-----------RALGDAPLPLFARLDGPMAGEPDAP-LPAMALGEHVVMDYG 902

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             L      HPL + +  L   G+   E    T  G  +  A +V+ +Q+  +  G  + +
Sbjct: 903  SLSLSLKAHPLALLRDGLP--GVTPAERLARTRDGRRLTTAGLVLVRQRPGSAAG--VVF 958

Query: 1018 VTFSEPAKEYEANFFP 1033
            +T  +          P
Sbjct: 959  LTLEDETGIANLVVMP 974


>gi|32471325|ref|NP_864318.1| DNA polymerase III alpha subunit [Rhodopirellula baltica SH 1]
 gi|71151837|sp|Q7UXK9|DNAE2_RHOBA RecName: Full=Error-prone DNA polymerase
 gi|32443166|emb|CAD71997.1| DNA polymerase III alpha subunit [Rhodopirellula baltica SH 1]
          Length = 1145

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/1044 (25%), Positives = 473/1044 (45%), Gaps = 72/1044 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            ++  +V L   S++S L+GA   + ++ + A      +AITD  ++   +     A   G
Sbjct: 101  RAMRYVELHCRSNFSFLDGASHPDELVQRAAELGYEGLAITDRESIAGVVRGFSPAQELG 160

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q I+G ++                     P +VL  +    Y R+  ++S   +  + K
Sbjct: 161  LQYIVGTEVHPT----------------DAPPMVLWPTDRAAYGRMCRMLSTGRMRCE-K 203

Query: 127  QSVRICLSWLQEIGT---EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                +    + E       G+I      S     A   +S Q        F+ +F DR Y
Sbjct: 204  GRCELSFEDIAEHAQGILAGVIATDESRSIEDQHAHVNDSRQFLR---GPFRDVFDDRGY 260

Query: 184  VNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            +    HRG D   + + +  L+   ++PL+A  +  + S E    HD ++A++    V Q
Sbjct: 261  LLASFHRGVDDAAKATWLRNLSLATDVPLLACGDVRYHSAERMALHDCVVAISQGKSVEQ 320

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                R+    H+L++  E+  ++ D+P+A+  T+E+A+RC+F L       P  +  E  
Sbjct: 321  IQSDRLVNSQHHLRSLEEIAELYRDVPDAVARTIEVAQRCTFTLDQLKYEYPVELAPEGM 380

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                     L+     G   R   G   K        + L  E+ +I  +++  YFL V 
Sbjct: 381  ----TPIEHLKRLTWEGARGRWPNGVPEK------VIETLRHEVTLIEDLQYEAYFLTVW 430

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +++A+   I +  GRGS A SV  Y L IT +DP    LLFERF++ +R   PD D+D
Sbjct: 431  DLVRFARSQEI-LCQGRGSAANSVVCYCLGITSVDPTHTDLLFERFISRERGEAPDIDVD 489

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F   RR+EV++Y+  KYG +R          +AK+A+R+VG+AL +    +D + KL  +
Sbjct: 490  FEHQRREEVLQYLYEKYGRDRAGMTAVVTCYRAKSAIREVGKALAISPDIIDAVAKLAGS 549

Query: 482  DPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
               +P          R R+A L    P   R L +++ L G  RH S H  G+V+    L
Sbjct: 550  YSRNP------ELPERCRDAGLDPDTPLGRRFLYLTETLIGFPRHLSQHVGGMVMTAGSL 603

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DL 598
             +L            V Q+N   ++  G++K D L L  L+ +++  + +     +   L
Sbjct: 604  CELCVTENAAMPGRSVIQWNKDDLDDIGILKVDILALGMLSAIRRCFELVKDHHNRELSL 663

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID-- 656
            S IP DD  TY ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI   
Sbjct: 664  STIPPDDTPTYDMICAADTMGVFQIESRAQMSMLPRLKPRCYYDLVIEVAIVRPGPIQGN 723

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  +   +         +  I  +L++T GV I+QEQ M++A + +G++  EAD LRRA
Sbjct: 724  MVHPFLAARENPAAAKYPNDAIRKVLEKTLGVPIFQEQAMKLAVVAAGFTPGEADQLRRA 783

Query: 717  MGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M   +    +D+ + + + G   NG++   A N+F  +  F +YGF +SHAA++A++ Y 
Sbjct: 784  MAAWRRPGVIDRFRTKLLEGMKANGLNGEFAENVFRQIRGFGEYGFPESHAASFALLVYA 843

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV------DFK 829
            + ++K HYP  F AA +  +        +  +DA+Q  +Q++P  +N   +      D  
Sbjct: 844  SCYLKRHYPTAFCAALLDSQPMGFYAPAQLIRDAQQHGVQVLPVDINDSNIRSKLIPDLN 903

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                ++   L  ++G+ +  A+ I+ A  A+ PF +L D  +R    + N   + +L  A
Sbjct: 904  RPHPKLRLGLQMVRGLPSAVAQKIIVARDANGPFANLHDLTTRAKLSRSN---IATLADA 960

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
             AL      R   +          Q + ++ +     + A  +    D    E+    + 
Sbjct: 961  DALASIAQDRRAAVW---------QSLAQDDSGDSMPLLADLE---PDCSVPEELVPMSP 1008

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
            +   +N+    G     HP+  ++  L  +  K   +      G ++R+A +V+ +Q+  
Sbjct: 1009 AEEVKNDYATTGLSLKAHPVSFWRDDLNALRCKRASDLPKLRDGVHVRVAGLVLMRQRPG 1068

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T KG  I +VT  +         F
Sbjct: 1069 TAKG--ITFVTMEDETGSMNLVLF 1090


>gi|293366351|ref|ZP_06613030.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus
            epidermidis M23864:W2(grey)]
 gi|291319476|gb|EFE59843.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus
            epidermidis M23864:W2(grey)]
 gi|329733734|gb|EGG70060.1| DNA polymerase III subunit alpha [Staphylococcus epidermidis VCU045]
          Length = 1065

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/1024 (31%), Positives = 534/1024 (52%), Gaps = 81/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI 
Sbjct: 3    AHLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +     +  T             V+L    +G + L ++ S + + ++      +
Sbjct: 63   GMTIYLTDGLYIIET-------------VVLAKNNQGLKSLYQISSAIMMRNKE----EV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             + WL+      +I+        +      ++ +  ++            LY+N   +  
Sbjct: 106  PIEWLKRYEEHLIIIF---KEAELSHKQIIDAFEGKKE------------LYLNHNSNNT 150

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                R               V   ++ +L+E+D E    L A+  +T +      + T D
Sbjct: 151  LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKL-DLIHEKETLD 194

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +  +  E+ ++ +   + + N  EI   C   +  H  +LP+F+    +      ++ L
Sbjct: 195  EHFPSIEELQTL-NLSEDMITNANEIEELCQAEIAYHQSLLPQFVTPNGE----TSKDYL 249

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                +  L             + + Y  RL  E  +I  M F  YFLIV+D I +AK + 
Sbjct: 250  WTILIHRLRE--------WELNDKTYFNRLKHEYKIITDMGFEDYFLIVSDLIHFAKTHE 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDIDIDFEDTRREKVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     ++L+ 
Sbjct: 362  KYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKLIPHKLG--ITLEE 419

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                  F+     +   +R  E+S+KLEGL RH STHAAGI+I D+PL +  P+      
Sbjct: 420  AYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQPLFKFAPL--TTGD 477

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  IP+DD + + 
Sbjct: 478  TGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINIDIEAIPYDDKKVFD 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++   +
Sbjct: 538  LLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHNPNQ 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+M IA  ++G+S  EAD+LRRAM KK +  ++ +++
Sbjct: 598  VTYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAMSKKNRAILESERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A 
Sbjct: 658  HFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K      +A+   I I+PP++N     +K  +  IY SL  IKG+G  + 
Sbjct: 718  ILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYLSLGTIKGIGYQSV 777

Query: 851  RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+ E   + P+    DF  R+  +  NR++LESL+  GA D FG +R  LLQ++D + 
Sbjct: 778  KLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGKTRATLLQAIDQVL 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 VE++       +F       + K + E+       +  + E+  LGFY S HP++
Sbjct: 838  DLNSDVEQDEM-----LF----DLLTPKQSYEEKEELPDQLLSDYEKEYLGFYISKHPVE 888

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                   K    G  +         I +       +Q +T+ G  + +VT ++     + 
Sbjct: 889  ---KKFEKKQYLGIFQLSNGSHYQPILV--QFDHIKQIRTKNGQNMAFVTMNDGRTMMDG 943

Query: 1030 NFFP 1033
              FP
Sbjct: 944  VIFP 947


>gi|76580102|gb|ABA49577.1| DNA polymerase III, alpha subunit, form 2 [Burkholderia pseudomallei
            1710b]
          Length = 1084

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1050 (26%), Positives = 448/1050 (42%), Gaps = 69/1050 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 21   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 80

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 81   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 135

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             R+    L         +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 136  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLVQ 195

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D     QV        + +VA  +            D + A+     +++     
Sbjct: 196  LQRALDGAHREQVRAAGERRGMHIVALGDVAMHIRSCKPLQDTMTAIRLGMPIAECGHAL 255

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 256  APNGEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----HT 309

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D +++
Sbjct: 310  PTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVKY 363

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   R
Sbjct: 364  ARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQR 422

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 423  REEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 482

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L   A      E     P +    EI+ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 483  DLLARFASVGLDPEV----PLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVE 538

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 539  NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 598

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 599  HIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 658

Query: 659  -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
               Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 659  VHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 718

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM   K K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A 
Sbjct: 719  LRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAK 778

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 779  LAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASLE 838

Query: 831  ---------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                     G   +   L+ ++G+G   AR I  A A  PF S+++   R       RR 
Sbjct: 839  AQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRACL---ERRD 895

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE+L  A A      +R   L             +         + A      + +  L 
Sbjct: 896  LEALAAANAFATLAGNRRDALW------------QAVAAAPERGLLAVAPIDEAVRPALG 943

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
              +  +       + R +G   + HP+ + +P L    +           G   R   +V
Sbjct: 944  APTEADDVF---ADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGLV 1000

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             ++Q   T KG  + +VT  +         
Sbjct: 1001 TARQMPGTAKG--VLFVTLEDETGCVNVIV 1028


>gi|167917420|ref|ZP_02504511.1| error-prone DNA polymerase [Burkholderia pseudomallei BCC215]
          Length = 1072

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1050 (26%), Positives = 448/1050 (42%), Gaps = 69/1050 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             R+    L         +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 124  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLVQ 183

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D     QV        + +VA  +            D + A+     +++     
Sbjct: 184  LQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHAL 243

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 244  APNGEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----HT 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D +++
Sbjct: 298  PTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVKY 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   R
Sbjct: 352  ARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQR 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 411  REEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L   A      E     P +    EI+ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 471  DLLARFASVGLDPEV----PLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVE 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 527  NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 586

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 587  HIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 646

Query: 659  -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
               Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 647  VHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 706

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM   K K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A 
Sbjct: 707  LRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAK 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 767  LAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASLE 826

Query: 831  ---------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                     G   +   L+ ++G+G   AR I  A A  PF S+++   R       RR 
Sbjct: 827  AQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRACL---ERRD 883

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE+L  A A      +R   L             +         + A      + +  L 
Sbjct: 884  LEALAAANAFATLAGNRRDALW------------QAVAAAPERGLLAAAPIDEAVRPALG 931

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
              +  +       + R +G   + HP+ + +P L    +           G   R   +V
Sbjct: 932  APTEADDVF---ADYRTIGLTLNRHPVALLRPALDARRLSSAAALRERRNGRLARACGLV 988

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             ++Q   T KG  + +VT  +         
Sbjct: 989  TARQMPGTAKG--VLFVTLEDETGCVNVIV 1016


>gi|53718111|ref|YP_107097.1| error-prone DNA polymerase [Burkholderia pseudomallei K96243]
 gi|126440547|ref|YP_001057563.1| error-prone DNA polymerase [Burkholderia pseudomallei 668]
 gi|217420209|ref|ZP_03451715.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 576]
 gi|71151821|sp|Q63XR8|DNAE2_BURPS RecName: Full=Error-prone DNA polymerase
 gi|52208525|emb|CAH34461.1| putative DNA polymerase III alpha subunit [Burkholderia pseudomallei
            K96243]
 gi|126220040|gb|ABN83546.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 668]
 gi|217397513|gb|EEC37529.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 576]
          Length = 1072

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1050 (26%), Positives = 448/1050 (42%), Gaps = 69/1050 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             R+    L         +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 124  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLVQ 183

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D     QV        + +VA  +            D + A+     +++     
Sbjct: 184  LQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHAL 243

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 244  APNGEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----HT 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D +++
Sbjct: 298  PTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVKY 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   R
Sbjct: 352  ARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQR 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 411  REEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L   A      E     P +    EI+ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 471  DLLARFASVGLDPEV----PLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVE 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 527  NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 586

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 587  HIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 646

Query: 659  -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
               Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 647  VHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 706

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM   K K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A 
Sbjct: 707  LRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAK 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 767  LAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASLE 826

Query: 831  ---------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                     G   +   L+ ++G+G   AR I  A A  PF S+++   R       RR 
Sbjct: 827  AQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRACL---ERRD 883

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE+L  A A      +R   L             +         + A      + +  L 
Sbjct: 884  LEALAAANAFATLAGNRRDALW------------QAVAAAPERGLLAAAPIDEAVRPALG 931

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
              +  +       + R +G   + HP+ + +P L    +           G   R   +V
Sbjct: 932  APTEADDVF---ADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGLV 988

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             ++Q   T KG  + +VT  +         
Sbjct: 989  TARQMPGTAKG--VLFVTLEDETGCVNVIV 1016


>gi|325109561|ref|YP_004270629.1| error-prone DNA polymerase, DnaE-like protein [Planctomyces
            brasiliensis DSM 5305]
 gi|324969829|gb|ADY60607.1| error-prone DNA polymerase, DnaE-like protein [Planctomyces
            brasiliensis DSM 5305]
          Length = 1061

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/1039 (26%), Positives = 461/1039 (44%), Gaps = 75/1039 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F  L+  S++S LEGA   + ++++ A     A+AITD N+L   +     A  AGI  
Sbjct: 30   PFAELRCLSNFSFLEGASHPDELVERAAELGYRALAITDRNSLAGVVRAHVAAKQAGIHL 89

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG +L               TP  ++P IV+L     GY RL  L++R       K + 
Sbjct: 90   LIGAEL---------------TPVDSLP-IVVLARNRAGYGRLCRLITRGRTR-APKGAC 132

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    + E  +E LI   G     +          V  + L  ++ +F D  Y  + RH
Sbjct: 133  ELTFQDIAE-HSEDLI---GCVPLSVRPTETPQEESVFRRELSRYRDVFQDSGYGLVHRH 188

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
                D       ++LA    L  VA+N+  +         DVL A+ H   V     R  
Sbjct: 189  LSDRDDLSVHAQLKLAEGSGLTPVASNDVHYHLPNRRVLQDVLTAIRHRCPVDSLGFRMF 248

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YLK   +M ++F + PE +  T +IA +C+F L       P  +  E    Q   
Sbjct: 249  PNGERYLKTPGQMRALFGNCPELVTRTADIANQCTFSLDELRYEYPEELCPE----QTTP 304

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     G   R   G           RQ +++EL +IA +K+  YFL V D + +A
Sbjct: 305  MEHLRQLTWRGAAGRYPDGT------PDHVRQLIEYELALIAELKYEAYFLTVHDLVHFA 358

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A S   + L +T +DP    +LFERF++ +R   PD DIDF  +RR
Sbjct: 359  RSRGI-LCQGRGSAANSAVCFCLGVTSVDPAYTQVLFERFISKERDEAPDIDIDFEHERR 417

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG ER     T  + + K+A+RDVG+AL +    ++ L            
Sbjct: 418  EEVIQYIYQKYGRERAGMTATLITYRLKSAVRDVGKALGLSQDCLETLA------AGFER 471

Query: 488  SLQAIADDSRFREARLADPSV--DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            S +      R  EA ++  S     L  +   + G  RH S H  G+V+    L ++VP+
Sbjct: 472  SNELQTLSQRMNEAGVSGGSTLGQFLRRLVVDILGFPRHLSQHTGGMVMTQGALCEVVPI 531

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                     V +++   ++  G++K D L L  LT ++K  D L +     + L+ +P +
Sbjct: 532  ENASMPGRTVVEWDKNDLDALGILKVDCLALGMLTAIRKGFDLLRESYGRDLSLATVPAE 591

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D +TY ++    T+G+FQ+ES      L  ++P  + D++  V++ RPGPI  D +  Y 
Sbjct: 592  DPQTYAMIQQADTMGVFQIESRAQMSMLPRLRPKEMYDLVIQVAIVRPGPIQGDMVHPYL 651

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R++G E     +  I  +L+ T GV I+QEQ M++A + +G++  EAD LRRAMG   K
Sbjct: 652  RRRDGLEAEEYPNEQIRDVLQRTLGVPIFQEQAMKLAVVAAGFTPGEADQLRRAMGAWRK 711

Query: 723  -EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               MD+  ++ ISG   +G  +  A  +F  +  F +YGF +SHAA++A++ Y +AW+K 
Sbjct: 712  SGVMDRFHQKLISGMLAHGYGRDFAERLFNQIRGFGEYGFPESHAASFALLVYVSAWLKC 771

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRI 835
            HYP  FLAA +  +     +  +  +DARQ  +++ P  VN    +  +          +
Sbjct: 772  HYPDVFLAALLNSQPLGFYQPAQLVRDARQHGVEVRPVDVNFSDWNCTLEAQPQSSCQAV 831

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                  I G+    A  I+ A     F ++++  +R     +   VL  L  + A     
Sbjct: 832  RLGFRQITGLSQRDAEAIVAARKGGAFQTVDEIANRT---GVANAVLSRLARSDAYSSLQ 888

Query: 896  YSRMQLLQ-SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
             SR   L  SL                   ++   ++             +  +     +
Sbjct: 889  LSRRTALWESLPQRLS-------------NSLLESQQPDAIPD----ALPIMPALTEVIH 931

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            + R  G     HP+   +  L ++     +   +      +R+A +V+ +Q+  T KG  
Sbjct: 932  DYRHSGLSLKDHPVRFLRKRLTQLQAVPMDTLGSYPVDRRVRVAGLVLLRQRPGTAKG-- 989

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            I ++T  +          P
Sbjct: 990  ITFMTLEDETGHANLIVHP 1008


>gi|190410010|ref|YP_001965534.1| probable DNA polymerase III alpha chain [Sinorhizobium meliloti]
 gi|125631040|gb|ABN47041.1| probable DNA polymerase III alpha chain [Sinorhizobium meliloti SM11]
          Length = 1085

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/1047 (25%), Positives = 459/1047 (43%), Gaps = 88/1047 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  LQV + +S L GA S   + +   A    A+ + D N+L   +   + + A G++ 
Sbjct: 2    SYAELQVTTHFSFLRGASSAQELFETAKALGIEALGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC                +       S++        Y RL  L++       GK + 
Sbjct: 62   VVGC----------------RLDLQDGMSVLAYPIDRAAYSRLTRLITLGKSRG-GKNNC 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
             +    +       + +L       +              +L    ++FGDR YV+L  R
Sbjct: 105  ILHWDDVAAYNDGMIGILVPDLPDDVC-----------AIQLRKMAEVFGDRAYVSLCLR 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
             R  D+ R  ++  LA   ++  V TN+ LF      +  D++  +   T + +      
Sbjct: 154  RRQNDQLRLHEISNLAARFKVKTVVTNDVLFHEPGRRQLQDIVTCIRTRTTIDEVGFERE 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK   EM  +F   P+AL  T+EI RRC+F L+      P    +E     K+ 
Sbjct: 214  RHADRYLKPPEEMERLFPRYPQALARTLEIVRRCTFSLEELTYQYP----EEAIVPGKDA 269

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L +     +  R  +G         D  + +  EL++I  MK++ YFL V   +++A
Sbjct: 270  QASLEHYVWQCVPDRYPEGL------PPDVLKVVRHELDLIRTMKYAPYFLTVFSIVRYA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +RR
Sbjct: 324  RSQGI-LCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+++   Y  E+ A   T    +A+ A+RDVG+AL +P   +  L   +        
Sbjct: 383  EEVIQWIYRTYTREKAALCATVTRYRARGAIRDVGKALGLPEDVIKALSSGMWA------ 436

Query: 488  SLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                   D   RE  L +P   RL   L+++Q+L G  RH   H  G V+    L  LVP
Sbjct: 437  -WSEEVCDRNVRELNL-NPDDRRLVLTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVP 494

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPF 603
            +      D  + +++   +E    +K D L L  LT + K+ D + +   +  DLS I  
Sbjct: 495  IEPATMKDRQIIEWDKDDVEALKFMKVDILALGMLTCMAKAFDLIREHKDRDLDLSDIEQ 554

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y
Sbjct: 555  EDPATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPY 614

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R+ GKE +    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M   K
Sbjct: 615  LRRREGKEAVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFK 674

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                + + K++ +SG  +NG +   A   F  L  F  YGF +SHAA++A+I+Y ++++K
Sbjct: 675  FTGGVSRFKDKLVSGMVRNGYTPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASSYIK 734

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDNR 834
             HYP  F AA +  +        +   DAR   +++ P  +N    D  +      G + 
Sbjct: 735  CHYPEAFCAALVNSQPMGFYAPAQIVGDARAHGVEVRPVCINRSRWDCTLERIGDSGRHA 794

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +      +KG+       I+ A  D  F S++D   R     ++   L  L  A A    
Sbjct: 795  VRLGFRQVKGLAVAETARIVAARMDNAFASVDDMWRR---SGVSSEALVQLAKADAF--- 848

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--------KGTFSDKITLEKFSVE 946
                   L S+   ++ A W  K   ++   +FA                ++ L + +  
Sbjct: 849  -------LPSMKLERRDALWAIKALRDEPLPLFAAAAKREMAAIAEQQEPEVALRQMTDG 901

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            ++ +    +    G     HP+   +  L    I    E++ +  G  +  A +V+ +Q 
Sbjct: 902  HNVI---EDYSHTGLTLRQHPIAFLRKDLSVRNIITCAEAMNSRDGRWVYTAGLVLVRQM 958

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + KG  + ++T  +         +P
Sbjct: 959  PGSAKG--VMFITIEDETGPANLVVWP 983


>gi|134279926|ref|ZP_01766638.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 305]
 gi|134249126|gb|EBA49208.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 305]
          Length = 1072

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1050 (26%), Positives = 448/1050 (42%), Gaps = 69/1050 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             R+    L         +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 124  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLVQ 183

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D     QV        + +VA  +            D + A+     +++     
Sbjct: 184  LQRALDGAHREQVRAAGERRGMHIVALGDVAMHIRSCKPLQDTMTAIRLGMPIAECGHAL 243

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 244  APNGEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----HT 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D +++
Sbjct: 298  PTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVKY 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   R
Sbjct: 352  ARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQR 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 411  REEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L   A      E     P +    EI+ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 471  DLLARFASVGLDPEV----PLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVE 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 527  NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 586

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 587  HIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 646

Query: 659  -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
               Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 647  VHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 706

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM   K K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A 
Sbjct: 707  LRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAK 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 767  LAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASLE 826

Query: 831  ---------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                     G   +   L+ ++G+G   AR I  A A  PF S+++   R       RR 
Sbjct: 827  AQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRACL---ERRD 883

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE+L  A A      +R   L             +         + A      + +  L 
Sbjct: 884  LEALAAANAFATLAGNRRDALW------------QAVAAAPERGLLAAAPIDEAVRPALG 931

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
              +  +       + R +G   + HP+ + +P L    +           G   R   +V
Sbjct: 932  APTEADDVF---ADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGLV 988

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             ++Q   T KG  + +VT  +         
Sbjct: 989  TARQMPGTAKG--VLFVTLEDETGCVNVIV 1016


>gi|167909389|ref|ZP_02496480.1| error-prone DNA polymerase [Burkholderia pseudomallei 112]
 gi|254196425|ref|ZP_04902849.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei S13]
 gi|169653168|gb|EDS85861.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei S13]
          Length = 1072

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1050 (26%), Positives = 448/1050 (42%), Gaps = 69/1050 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             R+    L         +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 124  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLVQ 183

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D     QV        + +VA  +            D + A+     +++     
Sbjct: 184  LQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHAL 243

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 244  APNGEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----HT 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D +++
Sbjct: 298  PTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVKY 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   R
Sbjct: 352  ARNKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQR 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 411  REEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L   A      E     P +    EI+ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 471  DLLARFASVGLDPEV----PLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVE 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 527  NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 586

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 587  HIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 646

Query: 659  -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
               Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 647  VHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 706

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM   K K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A 
Sbjct: 707  LRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAK 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 767  LAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASLE 826

Query: 831  ---------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                     G   +   L+ ++G+G   AR I  A A  PF S+++   R       RR 
Sbjct: 827  AQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRACL---ERRD 883

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE+L  A A      +R   L             +         + A      + +  L 
Sbjct: 884  LEALAAANAFATLAGNRRDALW------------QAVAAAPERGLLAAAPIDEAVRPALG 931

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
              +  +       + R +G   + HP+ + +P L    +           G   R   +V
Sbjct: 932  APTEADDVF---ADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGLV 988

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             ++Q   T KG  + +VT  +         
Sbjct: 989  TARQMPGTAKG--VLFVTLEDETGCVNVIV 1016


>gi|254187853|ref|ZP_04894365.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pasteur
            52237]
 gi|254296029|ref|ZP_04963486.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 406e]
 gi|157806301|gb|EDO83471.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 406e]
 gi|157935533|gb|EDO91203.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pasteur
            52237]
          Length = 1075

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1050 (26%), Positives = 448/1050 (42%), Gaps = 69/1050 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 12   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 71

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 72   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 126

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             R+    L         +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 127  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLVQ 186

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D     QV        + +VA  +            D + A+     +++     
Sbjct: 187  LQRALDGAHREQVRAAGERRGMHIVALGDVAMHIRSCKPLQDTMTAIRLGMPIAECGHAL 246

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 247  APNGEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----HT 300

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D +++
Sbjct: 301  PTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVKY 354

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   R
Sbjct: 355  ARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQR 413

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 414  REEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 473

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L   A      E     P +    EI+ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 474  DLLARFASVGLDPEV----PLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVE 529

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 530  NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 589

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 590  HIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 649

Query: 659  -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
               Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 650  VHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 709

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM   K K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A 
Sbjct: 710  LRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAK 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 770  LAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASLE 829

Query: 831  ---------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                     G   +   L+ ++G+G   AR I  A A  PF S+++   R       RR 
Sbjct: 830  AQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRACL---ERRD 886

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE+L  A A      +R   L             +         + A      + +  L 
Sbjct: 887  LEALAAANAFATLAGNRRDALW------------QAVAAAPERGLLAVAPIDEAVRPALG 934

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
              +  +       + R +G   + HP+ + +P L    +           G   R   +V
Sbjct: 935  APTEADDVF---ADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGLV 991

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             ++Q   T KG  + +VT  +         
Sbjct: 992  TARQMPGTAKG--VLFVTLEDETGCVNVIV 1019


>gi|126453110|ref|YP_001064810.1| error-prone DNA polymerase [Burkholderia pseudomallei 1106a]
 gi|242317426|ref|ZP_04816442.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106b]
 gi|126226752|gb|ABN90292.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106a]
 gi|242140665|gb|EES27067.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106b]
          Length = 1072

 Score =  799 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1050 (26%), Positives = 448/1050 (42%), Gaps = 69/1050 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             R+    L         +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 124  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLVQ 183

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D     QV        + +VA  +            D + A+     +++     
Sbjct: 184  LQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHAL 243

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 244  APNGEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----HT 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D +++
Sbjct: 298  STSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVKY 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   R
Sbjct: 352  ARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQR 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 411  REEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L   A      E     P +    EI+ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 471  DLLARFASVGLDPEV----PLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVE 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 527  NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 586

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 587  HIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 646

Query: 659  -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
               Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 647  VHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 706

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM   K K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A 
Sbjct: 707  LRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAK 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 767  LAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASLE 826

Query: 831  ---------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                     G   +   L+ ++G+G   AR I  A A  PF S+++   R       RR 
Sbjct: 827  AQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRACL---ERRD 883

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE+L  A A      +R   L             +         + A      + +  L 
Sbjct: 884  LEALAAANAFATLAGNRRDALW------------QAVAAAPERGLLAAAPIDEAVRPALG 931

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
              +  +       + R +G   + HP+ + +P L    +           G   R   +V
Sbjct: 932  APTEADDVF---ADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGLV 988

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             ++Q   T KG  + +VT  +         
Sbjct: 989  TARQMPGTAKG--VLFVTLEDETGCVNVIV 1016


>gi|295695654|ref|YP_003588892.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
 gi|295411256|gb|ADG05748.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
          Length = 1022

 Score =  799 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/1028 (28%), Positives = 491/1028 (47%), Gaps = 57/1028 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL  HS +S L+GA +   ++D  +     A+A+TD + +   + F + A   GI+PI 
Sbjct: 2    VHLHAHSYFSFLDGASAPEELVDIASQLGISAMALTDRDTVAGLVPFHRAAERVGIRPIS 61

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ ++                    + +L   A+GY  L  L+++ +L    +   R 
Sbjct: 62   GSEITMEDG----------------TVLTVLAENAKGYAELCTLLTKAHL-SHPRGEPRT 104

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRHR 190
                L +   EGLI+L+G   G I        +Q A +     +  L  DR ++ +Q   
Sbjct: 105  LYQDLVK-HREGLIVLSGDRRGRIPTLLLQKQNQKAREMAEWLRDGLGKDRFFLEIQDSF 163

Query: 191  GYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRV 248
                   + ++ +LA T ++ + AT++  + S + +  +DVL  + + T +        +
Sbjct: 164  TPGSQHLTGRLCELADTLDIGVTATHDIHYASPDQFPIYDVLTCIRNQTGLESPHPERPL 223

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                YL +  EM   F   P+AL   +EIA RC   L +  P  P F     D       
Sbjct: 224  NGKAYLLSPEEMTLRFKRRPDALHRAMEIAERCQVSLDLSLPRHPAFPHGPGD----TPM 279

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     G   R        G    + R+RL+ EL +I  + ++ YFL+V D +Q+A+
Sbjct: 280  AILRRLTEEGAIRRY-------GSLTPEIRRRLEHELAIIETLGYADYFLVVWDVVQYAR 332

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            K  I    GRGS A S  AY L ITD+D     LLFERF++ +R   PD D+DF   RRD
Sbjct: 333  KKGIRYA-GRGSAADSAVAYCLGITDVDAAGRGLLFERFISLERGEKPDIDVDFDARRRD 391

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EV  YV N+YG + VA + T+ + Q ++A+R+VGR +  P   +DRL K IP        
Sbjct: 392  EVAAYVYNRYGEDHVAAVCTYQTFQIRSAIREVGRVMGFPPPLLDRLAKRIPYMVRAGEL 451

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A+      R+A +    V +L  +   L  + RH  TH  G+VI   PL+ +  + R 
Sbjct: 452  GAALERFPELRDAGIEQKQVWQLFHLVSALVDIPRHIGTHLGGLVISRDPLTTVTSLQRS 511

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
             +  + +T F+ + +E  GL+K D L L+TL+ ++ ++  L + G  +D   IP DD +T
Sbjct: 512  AK-GVIITPFDKRAVEDVGLMKLDLLSLRTLSAVEDTVQLLHRDGKPIDPEDIPLDDPDT 570

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKN 666
            +  +    T+G+FQLES   R     ++PD +ED++A V+L RPGPI   +   +  R+ 
Sbjct: 571  FAAIGEGRTIGVFQLESPAQRALQVRLKPDHLEDLVASVALIRPGPIKGNMVEPFLERRR 630

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEM 725
            G  +   IHP + P+L +T GVI++QEQV++I   ++G++  EAD LRR M   +   EM
Sbjct: 631  GNAEFHYIHPALKPILDKTYGVILFQEQVIEIVTAVAGFTPGEADRLRRVMSHHRSLREM 690

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++  E F+  +   G+S+  A  I+  +  +A YGF ++HAAA+A  +Y+TA++  HYP 
Sbjct: 691  EEIGELFLEKSMARGVSRETAEQIYNYIKGYASYGFCEAHAAAFAATAYRTAYLARHYPA 750

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             + A  +         I   C +A +  ++I+PP VN      ++    I   L  IKG+
Sbjct: 751  AYYAGLLNQFPMGYYPIHVLCSEAHRRGVEILPPDVNNSETGCRLEKGNIRLGLNLIKGL 810

Query: 846  -GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
                 AR I +     PF S E+FC R+     +R +LE+L+  GA D    +R QLL  
Sbjct: 811  PREEVARIIEDRERHGPFASPEEFCLRIH---PSRTLLENLILTGAFDRLYPNRRQLLWY 867

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L+++ +               +   +                    R  +E R++    S
Sbjct: 868  LNDLLQ---------------LSGVDIHWTQILPPPGDSGDFTLKERLFHEYRLIQVGLS 912

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            GH +++++P+LR        +   +  G  +  A ++V   +  T  G  + + +  +  
Sbjct: 913  GHLMELFRPVLRTRRFLPVVDL-ESFEGKEVWTAGILVRPHRPPTPSGKTVVFFSLEDET 971

Query: 1025 KEYEANFF 1032
               +A  F
Sbjct: 972  GIVDAVMF 979


>gi|162210057|ref|YP_332106.2| error-prone DNA polymerase [Burkholderia pseudomallei 1710b]
 gi|254261216|ref|ZP_04952270.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1710a]
 gi|254219905|gb|EET09289.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1710a]
          Length = 1072

 Score =  799 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1050 (26%), Positives = 448/1050 (42%), Gaps = 69/1050 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             R+    L         +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 124  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLVQ 183

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D     QV        + +VA  +            D + A+     +++     
Sbjct: 184  LQRALDGAHREQVRAAGERRGMHIVALGDVAMHIRSCKPLQDTMTAIRLGMPIAECGHAL 243

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 244  APNGEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----HT 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D +++
Sbjct: 298  PTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVKY 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   R
Sbjct: 352  ARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQR 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 411  REEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L   A      E     P +    EI+ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 471  DLLARFASVGLDPEV----PLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVE 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 527  NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 586

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 587  HIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 646

Query: 659  -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
               Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 647  VHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 706

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM   K K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A 
Sbjct: 707  LRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAK 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 767  LAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASLE 826

Query: 831  ---------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                     G   +   L+ ++G+G   AR I  A A  PF S+++   R       RR 
Sbjct: 827  AQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRACL---ERRD 883

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE+L  A A      +R   L             +         + A      + +  L 
Sbjct: 884  LEALAAANAFATLAGNRRDALW------------QAVAAAPERGLLAVAPIDEAVRPALG 931

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
              +  +       + R +G   + HP+ + +P L    +           G   R   +V
Sbjct: 932  APTEADDVF---ADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGLV 988

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             ++Q   T KG  + +VT  +         
Sbjct: 989  TARQMPGTAKG--VLFVTLEDETGCVNVIV 1016


>gi|27468296|ref|NP_764933.1| DNA polymerase III alpha chain [Staphylococcus epidermidis ATCC
            12228]
 gi|38604815|sp|Q8CNX0|DPO3A_STAES RecName: Full=DNA polymerase III subunit alpha
 gi|27315842|gb|AAO04977.1|AE016748_211 DNA polymerase III alpha chain [Staphylococcus epidermidis ATCC
            12228]
          Length = 1065

 Score =  799 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/1024 (31%), Positives = 533/1024 (52%), Gaps = 81/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI 
Sbjct: 3    AHLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +        T             V+L    +G + L ++ S + + ++      +
Sbjct: 63   GMTIYLTDGLYTIET-------------VVLAKNNQGLKSLYQISSAIMMRNKE----EV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             + WL+      +I+        +      ++ +  ++            LY+N   +  
Sbjct: 106  PIEWLKRYDEHLIIIF---KEAELSHKQIIDAFEGKKE------------LYLNHNSNNT 150

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                R               V   ++ +L+E+D E    L A+  +T +      + T D
Sbjct: 151  LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKL-DLIHEKETLD 194

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +  +  E+ ++ +   + + N  EI   C   +  H  +LP+F+    +      ++ L
Sbjct: 195  EHFPSIEELQTL-NLSEDMITNANEIEELCQAEIAYHQSLLPQFVTPNGE----TSKDYL 249

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                +  L             + + Y  RL  E  +I  M F  YFLIV+D I +AK + 
Sbjct: 250  WTILIHRLRE--------WELNDKTYFNRLKHEYKIITDMGFEDYFLIVSDLIHFAKTHE 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDIDIDFEDTRREKVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     ++L+ 
Sbjct: 362  KYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKLIPHKLG--ITLEE 419

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                  F+     +   +R  E+S+KLEGL RH STHAAGI+I D+PL +  P+      
Sbjct: 420  AYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQPLFKFAPL--TTGD 477

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  IP+DD + + 
Sbjct: 478  TGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINIDIEAIPYDDKKVFD 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++   +
Sbjct: 538  LLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHNPNQ 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+M IA  ++G+S  EAD+LRRAM KK +  ++ +++
Sbjct: 598  VAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAMSKKNRAILESERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A 
Sbjct: 658  HFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K      +A+   I I+PP++N     +K  +  IY SL  IKG+G  + 
Sbjct: 718  ILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYLSLGTIKGIGYQSV 777

Query: 851  RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+ E   + P+    DF  R+  +  NR++LESL+  GA D FG +R  LLQ++D + 
Sbjct: 778  KLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGKTRATLLQAIDQVL 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 VE++       +F       + K + E+       +  + E+  LGFY S HP++
Sbjct: 838  DLNSDVEQDEM-----LF----DLLTPKQSYEEKEELPDQLLSDYEKEYLGFYISKHPVE 888

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                   K    G  +         I +       +Q +T+ G  + +VT ++     + 
Sbjct: 889  ---KKFEKKQYLGIFQLSNGSHYQPILV--QFDHIKQIRTKNGQNMAFVTMNDGRTMMDG 943

Query: 1030 NFFP 1033
              FP
Sbjct: 944  VIFP 947


>gi|329909587|ref|ZP_08275095.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
            IMCC9480]
 gi|327546430|gb|EGF31433.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
            IMCC9480]
          Length = 1039

 Score =  799 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/1042 (25%), Positives = 476/1042 (45%), Gaps = 81/1042 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+Y+ L GA     ++++ A     A+AITD  +L   +    +A   G+ 
Sbjct: 6    PPYAELHCLSNYTFLRGASHPEELIERAAGLGYTALAITDECSLAGVVRAHIEAKKHGLA 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +IG ++ +                     ++LL +   GY  L +L++      + +  
Sbjct: 66   LLIGTEVTLRCG----------------MKLLLLATNRNGYGNLSQLIT----NGRRRAD 105

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                   +++  T  L  L G  +  I      +     +++      +F  R ++ ++ 
Sbjct: 106  KGCYQLSIEDFVTPELAGLAGCLA--ILLPERAHGGDQRQQQAQWLAHVFEARAWIAVEL 163

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
             HR  D     ++  L+    LPLVA  +            D + A+     +++     
Sbjct: 164  LHRLDDDAWLQRLSALSQQTGLPLVAGGDVHMHLRSRKPLQDTVTAIRLGKPIAECGLAL 223

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  +  ++      LE T+ +A+RC+F L       P  I      +   
Sbjct: 224  HPNAEQHLRSRLRLAQLYPRA--LLEQTLVVAQRCTFSLDELRYEYPLEIVPAGATL--- 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  LR+    G   R A G  AK       +++++ EL +I  + +  YFL V D +++
Sbjct: 279  -DGHLRSLTYEGAARRFATGIPAK------VQEQIEHELALIHDLAYEPYFLTVHDIVRF 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A SV  Y L IT++DP R S+LFERF++ +R   PD D+DF   R
Sbjct: 332  ARSRDI-LCQGRGSAANSVVCYCLGITEVDPERMSMLFERFISKERNEPPDIDVDFEHQR 390

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG  R A      + + ++AL+DVG+AL + + Q++RL        +H 
Sbjct: 391  REEVIQYIYRKYGRHRAALTGVHITYRPRSALKDVGKALGIDFDQINRLS------HSHQ 444

Query: 487  VSLQAIADDSRFREARLADPS---VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                    D R RE+   DP    V +LLE+++ L G  RH S H  G VI    L++LV
Sbjct: 445  WWEDGQVSDERLRESGF-DPDASLVQKLLELTRTLVGFPRHLSQHPGGFVIARDNLARLV 503

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602
            P+      +  + +++   ++  G++K D L L  L+ ++++LD +  +RG    +  +P
Sbjct: 504  PIENAAMPERSMIEWDKNDLDALGILKIDVLALGMLSAIRRALDLIGLRRGDIFTMQDVP 563

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--V 660
             +D  TY ++    T+G+FQ+ES      L  ++P+    ++  V++ RPGPI   +   
Sbjct: 564  AEDPATYAMICAADTVGVFQIESRAQMSMLPRLRPEKFYHLVIEVAIVRPGPIQGGMVHP 623

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+ G E+    +  +   L+ T GV I+QEQVMQ+  L +G++  +AD LRR+M   
Sbjct: 624  YLRRRQGLEQATYANADMKLALERTLGVPIFQEQVMQVVMLAAGFTPGQADDLRRSMAAW 683

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K  + K +E  I G    G +   A  +F  +  F +YGF +SHAA++A++ Y +AW+
Sbjct: 684  KRKGGLQKFREPVIEGMLARGYNLEFAEGLFSQIEGFGEYGFPESHAASFALLVYVSAWI 743

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----- 834
            K H P  FLAA +  +        +  QDAR+  ++++P  V    V+  + ++      
Sbjct: 744  KRHEPAAFLAALLNSQPMGFYGPSQLVQDARRHGVRVLPVDVMISEVECTLEEHAAELNA 803

Query: 835  ----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                +   L  ++G+    A+ ++E  A +PFDS++D   R +  + + + L +      
Sbjct: 804  AQPDVRLGLCLVRGLSGQAAQRVIEVRAMRPFDSVDDMARRAELDQHDLKALAAANAL-- 861

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
                   R Q    +  +                 +  H   T +  +TL   S  +  V
Sbjct: 862  -FALAGHRRQANWEVAALL------------PVTPLLRHAPITEA-ALTLPAASEGHDIV 907

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                + R  G   + HPL + +P LR+M +    E      G  +R + +V  +Q+  T 
Sbjct: 908  ---ADYRSTGLTLNRHPLALLRPRLRQMKLSTALELKGFGNGKLVRTSGLVTMRQRPGTA 964

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            KG+   ++T  +         +
Sbjct: 965  KGTM--FITLEDETGVINVILW 984


>gi|242373992|ref|ZP_04819566.1| DNA polymerase III, alpha subunit [Staphylococcus epidermidis
            M23864:W1]
 gi|242348346|gb|EES39948.1| DNA polymerase III, alpha subunit [Staphylococcus epidermidis
            M23864:W1]
          Length = 1069

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/1025 (31%), Positives = 530/1025 (51%), Gaps = 81/1025 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H++Y LL  +L + ++++K   +   A+AITDT+ L+   +F     AA I PI 
Sbjct: 3    AHLNIHTAYDLLNASLRIEDVINKAKNEGYTALAITDTHVLYGFPKFYDACIAADIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  L +        T             V+L    EG + L +L S + +    K+   +
Sbjct: 63   GMTLILTDGLYKVET-------------VVLAQNNEGLKALYQLSSAIKM----KEKEEV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             L WL+      +I+             F +      + L  F       +Y+N      
Sbjct: 106  PLEWLKRYDDNLIII-------------FKDVESTHLQILEAFNDHT--HVYMNHTSDDI 150

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             DR +               V   ++ +L+ ED +    L A+  ++ +   +  +   +
Sbjct: 151  IDRKK---------------VWLQSARYLNREDADTISALQAIRDNSKLDLINESKDFGE 195

Query: 252  HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            H   +++E+ +I  D+  E ++NT  I   C   L  H  +LP+F+    +  ++   + 
Sbjct: 196  H-FPDQNELKNISDDVDEEVIKNTQTIVDLCQAELVYHQSLLPQFVTPNGEVAKEYLWSV 254

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L +K                  H   Y +RL  E  +I  M F  YFLIV+D I +AK +
Sbjct: 255  LIDKLNEW------------NLHNDQYLERLKHEYEIITNMGFEDYFLIVSDLIHYAKTH 302

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++V
Sbjct: 303  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKV 362

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     ++L 
Sbjct: 363  IQYVQDKYGDLHVSGIVTFGHLLARAVGRDVGRIMGFDETTLNEISKLIPHKLG--ITLD 420

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F+     +   +   ++S+KLEGL RH STHAAGI+I D+PL +  P+     
Sbjct: 421  EAYQQDNFKAFVHRNHRNELWFDMSKKLEGLPRHTSTHAAGIIINDQPLYKFAPLTLGDT 480

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  IPFDD + +
Sbjct: 481  G--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIVTQVKKDLNIDIDVETIPFDDRKVF 538

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++   
Sbjct: 539  KLLSQGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPS 598

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ ++
Sbjct: 599  KVEYLHPDLEPILKNTYGVIIYQEQIMQIASKFANFSYGEADILRRAMSKKNRAVLESER 658

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F++GA  NG  + ++  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K +YP  F A
Sbjct: 659  QHFVNGAKDNGYDEQMSKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVYYPNYFYA 718

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + + +K      +A+   I I+PP++N     +K     IY SL  IKGVG  +
Sbjct: 719  NILSNVIGSEKKTANMIDEAKHQKINILPPNINESHWFYKATSQGIYLSLGTIKGVGYQS 778

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  F    DF  R+  +   R++LE+L+  GA D F  +R  LLQ++D +
Sbjct: 779  VKLIVDERYNNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDNFDKNRATLLQAIDQV 838

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  VE++     + +F       + K   E        +    E+  LGFY S HP+
Sbjct: 839  LDTTSDVEQD-----DMLF----DILTPKQVYEDKEELPDKLLSNYEKEYLGFYISKHPV 889

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            +       K    G  +         I +     + +Q +T+ G  + +VT ++     +
Sbjct: 890  E---KEFEKKQYLGIYKLSNAQNFQPILV--QFDTIKQIRTKNGQNMAFVTLNDGMTLMD 944

Query: 1029 ANFFP 1033
               FP
Sbjct: 945  GVIFP 949


>gi|255532292|ref|YP_003092664.1| DNA polymerase III subunit alpha [Pedobacter heparinus DSM 2366]
 gi|255345276|gb|ACU04602.1| DNA polymerase III, alpha subunit [Pedobacter heparinus DSM 2366]
          Length = 1045

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/1036 (24%), Positives = 452/1036 (43%), Gaps = 71/1036 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQV S++S L GA   + ++++ AA     IAITD N L   +     A   G+  
Sbjct: 2    GYTELQVTSNFSFLRGASHPDEMVEQAAAYGYSKIAITDRNTLAGIVRAHVAAKKIGMSI 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I  C                +      PS++   +  + Y RL  L++   L  + K S 
Sbjct: 62   IPAC----------------RFDLIDGPSLLAYPTDRDAYSRLSGLLTTGNLRAE-KGSC 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             +    + E   +G+  +    +    R  F  S + A   L  +++  G  +Y+   R 
Sbjct: 105  HLYKKDVYE-HAKGIKFIVVPPASLNTRFDFEESFKKA---LAEYREALGSDVYLGAMRL 160

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
            + G D  +  ++ QLA   ++P+VATN+  +   +  E  D+L  V     +        
Sbjct: 161  YNGDDMKQLYRLSQLAKLLDMPMVATNDVHYHEPKRRELQDILTCVREKCTIQHAGFLLH 220

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YLK   EM  +F   P+A+  T EIA  C F L     + P  I  +     + +
Sbjct: 221  QHAERYLKPMEEMQRLFRQYPDAITRTQEIAEACQFSLDSLKYVYPEEITSDG----RTQ 276

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL   A  G   +            +     +  EL  + +   + YFL V DF+++A
Sbjct: 277  MEELTFLAWQGANEKF------NHAIPEKVEATIKAELAFMEKRNLAAYFLTVHDFVRFA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A SV  Y L IT +DP +F LLF RF++  R   PD D+DF  +RR
Sbjct: 331  RSQRI-LCQGRGSAANSVVCYCLGITSVDPSKFRLLFARFMSEARDEPPDIDVDFEHERR 389

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG ER A + T   L  K A+RDV +A+ +    V+RL   +        
Sbjct: 390  EEVIQYIYQKYGRERAAIVATVTQLHFKGAVRDVAKAMGLSVDMVNRLSASVWRHT---- 445

Query: 488  SLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                + DD +  E     +D  + + LE++ ++ G  R    H  G VI    LS L P+
Sbjct: 446  ---EVLDDQQLIEQGFDPSDRHLRKTLELTCQMIGFPRQLGQHTGGFVITQGKLSDLCPV 502

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                  D    ++N   I+  G +K D L L  LT ++K+ D +     + + L+ +P D
Sbjct: 503  MNARMEDRTCIEWNKDDIDALGFLKVDVLALGMLTCIRKAFDLVKAHYGLDLTLANVPQD 562

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D   Y +++   T+G+FQ+ES      L  ++P C  D++  V++ RPGPI  D +  Y 
Sbjct: 563  DPAVYEMISHADTIGVFQIESRAQMSMLPRLKPKCFYDLVIEVAIVRPGPIQGDMVHPYL 622

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKI 721
             R+NG+E +      ++ +L  T GV ++QEQ M+IA +  G++ +EAD LRR+M   K 
Sbjct: 623  RRRNGEEPVEYPSKELEEILDRTLGVPLFQEQAMEIAIMAGGFTPAEADELRRSMASFKA 682

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              ++   +++ + G    G  +  +  IF+ L  F  YGF +SHAA++A++ Y ++W+K 
Sbjct: 683  NGKLHLYEKKLVDGMVARGYEEGFSRRIFKQLQGFEGYGFPESHAASFALLVYVSSWLKC 742

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-----IY 836
            +YP  F  A +        +  +   DA++  +++ P  +N    D  + +       + 
Sbjct: 743  YYPDVFATALLNSLPMGFYQPAQLVIDAQKHGVEVKPVDINLSGWDNLLEEKAGKYWVVR 802

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
                 + G+     + ++   +   F       + +    + +  LE L  A A    G 
Sbjct: 803  LGFRQVSGLREEDLQALIAGRSGGYFS-----VNALRDAGVPQAALEKLADADAFRSIGL 857

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R Q L  +  +            ++   +F  +      +  +       +      + 
Sbjct: 858  DRRQALWEVSAL-----------GDRPVALFEGQPSESVTETQV-ALPFMTAGEHVVQDY 905

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
                     HP+   +  L+ + +   +E      G+ +++A +++ +Q+  T  G  I 
Sbjct: 906  AATSLSLKAHPVSFVREKLKLLRVLSAQEITEAKDGDFVKVAGLILVRQRPGTASG--IC 963

Query: 1017 WVTFSEPAKEYEANFF 1032
            ++T  + +       F
Sbjct: 964  FITIEDESGTVNLVVF 979


>gi|107023760|ref|YP_622087.1| error-prone DNA polymerase [Burkholderia cenocepacia AU 1054]
 gi|116690846|ref|YP_836469.1| error-prone DNA polymerase [Burkholderia cenocepacia HI2424]
 gi|105893949|gb|ABF77114.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia AU 1054]
 gi|116648935|gb|ABK09576.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
          Length = 1071

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/1049 (25%), Positives = 455/1049 (43%), Gaps = 68/1049 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     ++++        IAITD  +L  A      A   G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASHAEELVERAVKLGYRGIAITDECSLAGAPRMHVAAKEEGLS 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +IG   D+   +       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVIGSYFDVTPDE----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMEAPKGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             ++    L     +   +        I    +   + V + ++  F+  FG+R  V L Q
Sbjct: 124  YKLTSRMLSAPPAKFAHLRGMPDCFAILVPTYPVRADVLDAQVAWFRATFGERARVGLVQ 183

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D  +  ++        + LVA  +            DV+ A+     V++     
Sbjct: 184  LQRALDGVQRDEIRAAGKRRGVRLVALGDVTMHVRSCKPLQDVMTAIRVGMPVAECGYAL 243

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  +  +FS   E +  T  +   C F L       P  +          
Sbjct: 244  APNAEQHLRSRGRIAKLFS--AEEIAETCAMLDACDFDLDDLKYEYPLELVPRG----HT 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L+ +  AG+  R   G   K        +++ +EL +IA++++  +FL V D +++
Sbjct: 298  PTSYLKQETWAGVARRYWNGVPEK------VAKQIRYELALIAKLEYEPFFLTVYDIVKY 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  NI +  GRGS A SV  Y L IT+++P + ++LFERF++  R   PD D+DF   R
Sbjct: 352  ARSQNI-LCQGRGSAANSVVCYCLGITEVNPDQSTMLFERFISEKRGEPPDIDVDFEHQR 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+++  KYG +R A      + + +  LR+ G+AL +    VDR+ K         
Sbjct: 411  REEVIQHIYEKYGKDRAALAAAVSTYRPRGVLRETGKALGVDPMLVDRVAKGHRWFDGSR 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              LQ  A          A P +    E++ +L    RH S H+ G VI    L++LVP+ 
Sbjct: 471  DLLQQFASTG----LDPATPIIQTWAELAGRLLNFPRHLSQHSGGFVISRGKLTRLVPVE 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------AQRGVKVDLSL 600
                    V Q++   +E  GL+K D L L  L+ L ++ D        A+ G    L  
Sbjct: 527  NAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPAKDGKLFTLKH 586

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI-- 658
            IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI     
Sbjct: 587  IPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRNYYDLVVQVSIVRPGPIQGGAV 646

Query: 659  VVYNNRKN---GKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              Y  R+    G+EK  +      +  +L  T GV I+QEQVMQIA + +G++  EAD L
Sbjct: 647  HPYLKRRRIVAGEEKGEVTYPSDALKEVLVRTLGVPIFQEQVMQIAIVAAGFTPGEADDL 706

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM   K K  ++K +++ ISG  +   ++  A  IFE +  F +YGF +SHAA++A +
Sbjct: 707  RRAMAAWKRKGNLEKYQDKIISGMLERNYTREFAEQIFEQIKGFGEYGFPESHAASFAKL 766

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD----- 827
            +Y ++W+K H P  FLAA +  +        +  QDA++  ++++P  V     +     
Sbjct: 767  AYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHRVKVLPIDVTQSGWEASLEA 826

Query: 828  -----FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                    G   +   L+ ++G+    AR I  A    PFDS++    R   ++  R + 
Sbjct: 827  LPDQPPPHGQPAVRLGLSLVRGLSEAAARRIEAARTAGPFDSIDSLARRAQLER--RDLE 884

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
                        G+ R  L Q++                   ++ A      +++  L  
Sbjct: 885  ALAAANALATLAGHRRDALWQAV-------------AAAPERDLLAAAPIDEAEQPALGA 931

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             S  +  +    +    G   + HP+ + +P LR   +    E      G   R   +V+
Sbjct: 932  PSEADDIL---ADYHTTGLTLNRHPVALLRPALRAQRLSSAAELRDRPDGRLARACGLVI 988

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            ++Q   T KG  + ++T  +         
Sbjct: 989  ARQMPGTAKG--VMFMTLEDETGCVNVIV 1015


>gi|70726223|ref|YP_253137.1| DNA polymerase III subunit alpha [Staphylococcus haemolyticus
            JCSC1435]
 gi|68446947|dbj|BAE04531.1| DNA polymerase III, alpha chain [Staphylococcus haemolyticus
            JCSC1435]
          Length = 1067

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/1024 (32%), Positives = 542/1024 (52%), Gaps = 78/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H++Y LL  +L +N+++ K   +    +AITDTN L+   +F      A I+PI 
Sbjct: 3    AHLNLHTTYDLLNSSLRINDVVKKAQNNHYDTLAITDTNVLYGFPKFYDACIKANIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  +++        T             V+L    +G + L +L S + +    KQ   I
Sbjct: 63   GMTVNVTDGLYTIET-------------VVLAINNDGLRSLFQLSSAIKM----KQKEVI 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             + WL++  T   I+                           FK+       +  Q    
Sbjct: 106  SVEWLKKYSTNFAII---------------------------FKQANQSHYSIVEQFQNH 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             + +       LA+ + + +V   N+ +L++ED E    L A+ ++T +   +      +
Sbjct: 139  QNIFINHS-SDLAFYNNIRVVWFKNARYLNQEDVETIPALEAIKNNTKIDLVNDTEDIGE 197

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            H+ K ++E+ ++  D  E   NT+E+A  C+  L+ H  +LP+F     +      +  L
Sbjct: 198  HFPK-QNELETLNIDR-EVWNNTLELASLCNASLEYHQNLLPKFDAPSGN----SSKEYL 251

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
             ++  + L+            H + Y +RL+ E  VI  M F  YFLIV+D I +AK ++
Sbjct: 252  WSQLQSSLKKMELN-------HDERYTKRLEHEYRVITEMGFEDYFLIVSDLIHYAKTHD 304

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ ++ L IT IDP+RF+LLFERFLNP+R++MPD DIDF   RR+ VI
Sbjct: 305  VMVGPGRGSSAGSLVSFLLGITTIDPIRFNLLFERFLNPERVTMPDIDIDFEDTRRERVI 364

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ+KYG  RV+ I+TFG L  +A  RDVGR +      ++ + KLIP+     ++L  
Sbjct: 365  QYVQDKYGKHRVSGIVTFGHLLTRAVARDVGRIIGFNDKTLNEISKLIPHQLG--ITLDK 422

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
              +D +F++    +   ++  E+S+KLEGL RH STHAAGI+I D+PL    P+      
Sbjct: 423  AYEDEQFKQFVHRNHRHEKWFELSKKLEGLPRHTSTHAAGIIINDQPLYNYAPLTLGDTG 482

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +++  IPF+D + + 
Sbjct: 483  --LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIITQVKKDLNISLEIEEIPFNDVDVFK 540

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R+ L+ +QP+  EDI+A+ SLYRPGP++ I  Y +R++ + +
Sbjct: 541  LLSRGDTTGIFQLESEGVRKVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYISRRHNESE 600

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  +AD+LRRAM KK +  ++ +++
Sbjct: 601  IKYLHPDLEPILKNTYGVIIYQEQIMQIASQFASFSYGQADILRRAMSKKNRAVLESERQ 660

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ GA KN   + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  A++K HYP  F A 
Sbjct: 661  HFVEGAIKNKYDEKISKQIFDLILKFADYGFPRAHAVSYSKIAYIMAYLKVHYPNYFYAN 720

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + N  K      +A+   ++I+PP++N     ++   + IY SL AIKGVG  + 
Sbjct: 721  ILSNVVGNESKTAAIIDEAKNQKLKILPPNINESHWYYRATKSNIYLSLGAIKGVGYQSV 780

Query: 851  RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I++    +  +    DF  R+ ++   R++LESL+  GA D FG +R  LL S+D + 
Sbjct: 781  KSIVDERYQNGKYKDFFDFTRRIPNRIKTRKLLESLILVGAFDTFGKTRSTLLSSIDQVL 840

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 VE        ++        + K +       +  +    E   LGFY S HP++
Sbjct: 841  DEVSNVE------QNDLLLD---ILTPKQSYADKDEFSDQMISSYEMEYLGFYVSNHPVE 891

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                   K    G       +    I +   V   +Q +T+ G  + ++  ++     +A
Sbjct: 892  ---KQFNKKQYLGIYTLSNVVNHKPILV--QVDQIKQIRTKNGQNMAFLVLNDGRHTMDA 946

Query: 1030 NFFP 1033
              FP
Sbjct: 947  VLFP 950


>gi|329737251|gb|EGG73505.1| DNA polymerase III subunit alpha [Staphylococcus epidermidis VCU028]
          Length = 1065

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/1024 (31%), Positives = 534/1024 (52%), Gaps = 81/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI 
Sbjct: 3    AHLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +     +  T             V+L    +G + L ++ S + + ++      +
Sbjct: 63   GMTIYLTDGLYIIET-------------VVLAKNNQGLKSLYQISSAIMMRNKE----EV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             + WL+      +I+        +      ++ +  ++            LY+N   +  
Sbjct: 106  PIEWLKRYEEHLIIIF---KEAELSHKQIIDAFEGKKE------------LYLNHNSNNT 150

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                R               V   ++ +L+E+D E    L A+  +T +      + T D
Sbjct: 151  LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKL-DLIHEKETLD 194

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +  +  E+ ++ +   + + N  EI   C   +  H  +LP+F+    +      ++ L
Sbjct: 195  EHFPSIEELQTL-NLSEDMITNANEIEELCQAEIAYHQSLLPQFVTPNGE----TSKDYL 249

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                +  L             + + Y  RL  E  +I  M F  YFLIV+D I +AK + 
Sbjct: 250  WTILIHRLRE--------WELNDKTYFNRLKHEYKIITDMGFEDYFLIVSDLIHFAKTHE 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDIDIDFEDTRREKVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     ++L+ 
Sbjct: 362  KYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKLIPHKLG--ITLEE 419

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                  F+     +   +R  E+S+KLEGL RH STHAAGI+I D+PL +  P+      
Sbjct: 420  AYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQPLFKFAPL--TTGD 477

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  IP+DD + + 
Sbjct: 478  TGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINIDIEAIPYDDKKVFD 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++   +
Sbjct: 538  LLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHNPNQ 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+M IA  ++G+S  EAD+LRRAM KK +  ++ +++
Sbjct: 598  VAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAMSKKNRAILESERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A 
Sbjct: 658  HFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K      +A+   I I+PP++N     +K  +  IY SL  IKG+G  + 
Sbjct: 718  ILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYLSLGTIKGIGYQSV 777

Query: 851  RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+ E   + P+    DF  R+  +  NR++LESL+  GA D FG +R  LLQ++D + 
Sbjct: 778  KLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGKTRATLLQAIDQVL 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 VE++       +F       + K + E+       +  + E+  LGFY S HP++
Sbjct: 838  DLNSDVEQDEM-----LF----DLLTPKQSYEEKEELPDQLLSDYEKEYLGFYISKHPVE 888

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                   K    G  +         I +       +Q +T+ G  + +VT ++     + 
Sbjct: 889  ---KKFEKKQYLGIFQLSNGSHYQPILV--QFDHIKQIRTKNGQNMAFVTMNDGRTMMDG 943

Query: 1030 NFFP 1033
              FP
Sbjct: 944  VIFP 947


>gi|251811096|ref|ZP_04825569.1| DNA polymerase III alpha chain [Staphylococcus epidermidis
            BCM-HMP0060]
 gi|251805393|gb|EES58050.1| DNA polymerase III alpha chain [Staphylococcus epidermidis
            BCM-HMP0060]
          Length = 1065

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/1024 (31%), Positives = 533/1024 (52%), Gaps = 81/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI 
Sbjct: 3    AHLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +        T             V+L    +G + L +L S + + ++      +
Sbjct: 63   GMTIYLTDGLYTIET-------------VVLAKNNQGLKSLYQLSSAIMMRNKE----EV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             + WL+      +I+        +      ++ +  ++            LY+N   +  
Sbjct: 106  PIEWLKRYDEHLIIIF---KEAELSHKQVIDAFEGKKE------------LYLNHNSNNT 150

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                R               V   ++ +L+E+D E    L A+  +T +      + T D
Sbjct: 151  LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKL-DLIHEKETLD 194

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +  +  E+ ++ +   + + N  EI   C   +  H  +LP+F+    +      ++ L
Sbjct: 195  EHFPSIEELQTL-NLSEDMITNANEIEELCQAEIAYHQSLLPQFVTPNGE----TSKDYL 249

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                +  L             + + Y  RL  E  +I  M F  YFLIV+D I +AK + 
Sbjct: 250  WTILIHRLRE--------WELNDKTYFNRLKHEYKIITDMGFEDYFLIVSDLIHFAKTHE 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDIDIDFEDTRREKVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     ++L+ 
Sbjct: 362  KYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKLIPHKLG--ITLEE 419

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                  F+     +   +R  E+S+KLEGL RH STHAAGI+I D+PL +  P+      
Sbjct: 420  AYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQPLFKFAPL--TTGD 477

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  IP+DD + + 
Sbjct: 478  TGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINIDIEAIPYDDKKVFD 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++   +
Sbjct: 538  LLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHNPNQ 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+M IA  ++G+S  EAD+LRRAM KK +  ++ +++
Sbjct: 598  VAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAMSKKNRAILESERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A 
Sbjct: 658  HFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K      +A+   I I+PP++N     +K  +  IY SL  IKG+G  + 
Sbjct: 718  ILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYLSLGTIKGIGYQSV 777

Query: 851  RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+ E   + P+    DF  R+  +  NR++LESL+  GA D FG +R  LLQ++D + 
Sbjct: 778  KLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGKTRATLLQAIDQVL 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 VE++       +F       + K + E+       +  + E+  LGFY S HP++
Sbjct: 838  DLNSDVEQDEM-----LF----DLLTPKQSYEEKEELPDQLLSDCEKEYLGFYISKHPVE 888

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                   K    G  +         I +       +Q +T+ G  + +VT ++     + 
Sbjct: 889  ---KKFEKKQYLGIFQLSNGSHYQPILV--QFDHIKQIRTKNGQNMAFVTMNDGRTMMDG 943

Query: 1030 NFFP 1033
              FP
Sbjct: 944  VIFP 947


>gi|329724716|gb|EGG61222.1| DNA polymerase III subunit alpha [Staphylococcus epidermidis VCU144]
          Length = 1065

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/1024 (31%), Positives = 533/1024 (52%), Gaps = 81/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI 
Sbjct: 3    AHLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +        T             V+L    +G + L ++ S + + ++      +
Sbjct: 63   GMTIYLTDGLYTIET-------------VVLAKNNQGLKSLYQISSAIMMRNKE----EV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             + WL+      +I+        +      ++ +  ++            LY+N   +  
Sbjct: 106  PIEWLKRYDEHLIIIF---KEAELSHKQIIDAFEGKKE------------LYLNHNSNNT 150

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                R               V   ++ +L+E+D E    L A+  +T +      + T D
Sbjct: 151  LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKL-DLIHEKETLD 194

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +  +  E+ ++ +   + + N  EI   C   +  H  +LP+F+    +      ++ L
Sbjct: 195  EHFPSIEELQTL-NLSEDMITNANEIEELCQAEIAYHQSLLPQFVTPNGE----TSKDYL 249

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                +  L             + + Y  RL  E  +I  M F  YFLIV+D I +AK + 
Sbjct: 250  WTILIHRLRE--------WELNDKTYFNRLKHEYKIITDMGFEDYFLIVSDLIHFAKTHE 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDIDIDFEDTRREKVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     ++L+ 
Sbjct: 362  KYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKLIPHKLG--ITLEE 419

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                  F+     +   +R  E+S+KLEGL RH STHAAGI+I D+PL +  P+      
Sbjct: 420  AYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQPLFKFAPL--TTGD 477

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  IP+DD + + 
Sbjct: 478  TGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINIDIEAIPYDDKKVFD 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++   +
Sbjct: 538  LLSNGNTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHNPNQ 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+M IA  ++G+S  EAD+LRRAM KK +  ++ +++
Sbjct: 598  VAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAMSKKNRAILESERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A 
Sbjct: 658  HFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K      +A+   I I+PP++N     +K  +  IY SL  IKG+G  + 
Sbjct: 718  ILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYLSLGTIKGIGYQSV 777

Query: 851  RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+ E   + P+    DF  R+  +  NR++LESL+  GA D FG +R  LLQ++D + 
Sbjct: 778  KLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGKTRATLLQAIDQVL 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 VE++       +F       + K + E+       +  + E+  LGFY S HP++
Sbjct: 838  DLNSDVEQDEM-----LF----DLLTPKQSYEEKEELPDQLLSDYEKEYLGFYISKHPVE 888

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                   K    G  +         I +       +Q +T+ G  + +VT ++     + 
Sbjct: 889  ---KKFEKKQYLGIFQLSNGSHYQPILV--QFDHIKQIRTKNGQNMAFVTMNDGRTMMDG 943

Query: 1030 NFFP 1033
              FP
Sbjct: 944  VIFP 947


>gi|172061785|ref|YP_001809437.1| error-prone DNA polymerase [Burkholderia ambifaria MC40-6]
 gi|171994302|gb|ACB65221.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MC40-6]
          Length = 1071

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/1049 (26%), Positives = 458/1049 (43%), Gaps = 68/1049 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASHAEELVERAAELGYRGIAITDECSLAGAPRMHVAAKAQGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G   ++   +       G  P P    +VLL    EGY  L EL+S   +    K +
Sbjct: 69   LIVGSFFEVTPDE----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISWRRMASP-KGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             R+    L     E   +        I    +   + V + ++  F+  FG R  + L Q
Sbjct: 124  YRLTSRMLSAPPAEFAHLRGMPDCFAILVPTYPVRADVLDAQVAWFRATFGARARLGLVQ 183

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D  +  ++        + +VA  +            DV+ A+     VS+     
Sbjct: 184  LQRPLDGAQREEIRAAGERRGVRIVALGDVTMHRRSCKPLQDVMTAIRVGMPVSECGYAL 243

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  +  +FS  PE L+ T  I   C F L       P  I  +       
Sbjct: 244  APNAEQHLRARGRIAKLFS--PEELDETCAILDACDFKLDSLQYEYPDEIVPKG----LT 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L  +  AG   R  QG   K        +++ +EL++IAR+ +  +FL V D +++
Sbjct: 298  PTRHLEQETFAGAAARYPQGIPEK------VERQIRYELDLIARLSYEPFFLTVYDIVKY 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  NI +  GRGS A SV  Y L IT+++P + ++LFERF++ +R   PD D+DF   R
Sbjct: 352  ARSQNI-LCQGRGSAANSVVCYCLGITEVNPEQSTMLFERFISEERGEPPDIDVDFEHQR 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+++ +KYGH+R A      + + +  LR+ G+AL +    VDR+ K         
Sbjct: 411  REEVIQHIYDKYGHDRAALAAAVSTYRPRGVLRETGKALGVDPMLVDRVAKAHRWFDGSR 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              LQ  A          A P +    E++ +L    RH S H+ G VI    L++LVP+ 
Sbjct: 471  DLLQQFASTG----LDPAMPIIRAWAELAGRLLNFPRHLSQHSGGFVISRGKLTRLVPVE 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVD-----LSL 600
                    V Q++   +E  GL+K D L L  L+ L ++ D   A RG + D     L  
Sbjct: 527  NAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPQEDGQPFTLKH 586

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI-- 658
            IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI     
Sbjct: 587  IPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLKPRNYYDLVVEVSIVRPGPIQGGAV 646

Query: 659  VVYNNRKN---GKE--KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              Y  R+    G+E  ++      +  +L+ T GV I+QEQVMQIA + +G++  EAD L
Sbjct: 647  HPYLKRRRIMAGEEEGEVTYPSEALKEVLERTLGVPIFQEQVMQIAIVAAGFTPGEADEL 706

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM   K K  ++K   + I G  +   ++  A  IFE +  F +YGF +SHAA++A +
Sbjct: 707  RRAMAAWKRKGNLEKYHGKIIDGMLERNYTREFAEQIFEQIKGFGEYGFPESHAASFAKL 766

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD----- 827
            +Y ++W+K H P  FLAA +  +        +  QDA++  +Q++P  V     +     
Sbjct: 767  AYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHGVQVLPIDVTLSNWEASLAA 826

Query: 828  -----FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                    G   +   L+ ++G+G   AR I  A A  PFD+++    R   ++  R + 
Sbjct: 827  LPDQPPPHGQPAVRLGLSLVRGLGEAAARRIEAARAAGPFDNVDVLARRAQLER--RDLE 884

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
                        G+ R  L Q++                   ++ A       +K  L  
Sbjct: 885  ALAAANALATLAGHRRDALWQAV-------------AAAPERDLLAAAPIDEPEKPALGA 931

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             S  +  +    +    G   + HP+ + +P LR   +    E      G   R   +V 
Sbjct: 932  PSEADDIL---ADYDTTGLTLNRHPVALVRPALRAQRLSSAAELRDRSDGRLARACGIVT 988

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            ++Q   T KG  + ++T  +         
Sbjct: 989  ARQMPGTAKG--VMFMTLEDETGCVNVIV 1015


>gi|257867601|ref|ZP_05647254.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC30]
 gi|257873931|ref|ZP_05653584.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC10]
 gi|257801657|gb|EEV30587.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC30]
 gi|257808095|gb|EEV36917.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC10]
          Length = 1103

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/1032 (30%), Positives = 526/1032 (50%), Gaps = 62/1032 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+YSLL+  + + + +++        + +TD N L+ A+EF Q+  A GI+PI
Sbjct: 2    YSQLTTLSAYSLLQSTIKIPHYIEQAKKMGYQTLGLTDHNVLYGAVEFYQQCLAQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G   D           +G   FP    + +     +GYQ L+ L S   + +Q   +  
Sbjct: 62   FGALFDCTFG-------EGSMSFP----LYVFAKNLKGYQTLMRLSSEKMITEQLNLAAC 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
              L  L      GL+       G        +  +  ++ L      F  + L++ +   
Sbjct: 111  DSLQDL-----FGLL-----PEGEGFLPSQHDDLEANQEALRAISHKFDSESLFLGITS- 159

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            +G D    S+ +       +   A      L++E+  A  V+  +   + +    + +  
Sbjct: 160  KGLD----SETIAWFNEQNIAPCAYQPIAALAQEEAFAVKVMTHIKEGSQIEDFRQAKEQ 215

Query: 250  P--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 +L+   ++ + F +  +AL N   IA  C+  L +H  +LP +        ++  
Sbjct: 216  GAAQLFLQPADQLTAAFEEWSQALMNNQRIAAECAVELPLHQRLLPHYPLP----AEESA 271

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR      L  R+A    A       Y QRLD+EL+VI +M F  YFLI+ D + +A
Sbjct: 272  ADYLRKICFERLPQRVAHVTSA-------YEQRLDYELSVIHKMGFDDYFLIIWDVMDFA 324

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I  G GRGS AG++ AY L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +RR
Sbjct: 325  HQQEIVTGAGRGSAAGALVAYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNRR 384

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+++YV+ KYG E +AQI TFG++ AK  LRDV R   +  S+ +R  K IPN     +
Sbjct: 385  DEILQYVRQKYGQEYMAQIATFGTMAAKMVLRDVSRVFGLSQSEANRWSKAIPNALKMTL 444

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             L A    ++ RE    +     + ++++ LEGL RH STHAAG+VI D+ L  LVP+  
Sbjct: 445  DL-AYEQSNQLRELVSFNERNQVMFQVAKILEGLPRHVSTHAAGVVISDKNLLDLVPLQ- 502

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
            +    + +TQF M  +E  GL+K DFLGL+ L+++  +L  + +     V    IP DD 
Sbjct: 503  EGSDGIWLTQFTMNDVEAIGLLKMDFLGLRNLSIIDNTLKGIKRISQQIVTQKEIPLDDP 562

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T GIFQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  RK 
Sbjct: 563  ATLRLFQKGETAGIFQFESAGIRNVLRKLGPESIEDITAVNALYRPGPMQNIDTFIKRKK 622

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E++      + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +D
Sbjct: 623  GQERVSYPDDSLIPILQNTYGIIVYQEQIMQVASKMAGFSLGQADILRRAISKKKKDVLD 682

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +++  F+ GA  N   +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP  
Sbjct: 683  EERRHFVQGALANQYDEKTANLVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPAP 742

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGV 845
            F A+ +    +   K+K++  +A ++ ++++PPS+N     F++  + +I +  ++IKG+
Sbjct: 743  FFASILHSVRNTASKMKEYLNEAARYGVEVLPPSINASGFSFQLQNEKQIRFGFSSIKGI 802

Query: 846  GTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLN---RRVLESLVFAGALDCFGYSRMQL 901
                 + I+    +   F S++ F  R++ +         L  L+  G  D    +R Q 
Sbjct: 803  RRDMIQDILAERKEHGNFTSMDQFLLRLNQRNSKWLKLDYLLPLLSIGVFDGIAPNRKQA 862

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L  L+   +   +     +    ++           +  E  +      +   E+  LG 
Sbjct: 863  LIQLEGKIQNITY-----SGGSLDLLETMA------LKEEAVADYKLEEKLALEEEYLGV 911

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y SGHP++ ++ + +   I    + V       +R+   V   ++ +T+KG ++ +V  +
Sbjct: 912  YLSGHPVEQFQKLHQLKQITDIADLVP---NERVRILLYVRKIREIRTKKGEQMAFVEGT 968

Query: 1022 EPAKEYEANFFP 1033
            + +KE     FP
Sbjct: 969  DASKEVSVTIFP 980


>gi|223985834|ref|ZP_03635875.1| hypothetical protein HOLDEFILI_03181 [Holdemania filiformis DSM
            12042]
 gi|223962224|gb|EEF66695.1| hypothetical protein HOLDEFILI_03181 [Holdemania filiformis DSM
            12042]
          Length = 1008

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/1006 (33%), Positives = 522/1006 (51%), Gaps = 46/1006 (4%)

Query: 30   NNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQG 89
              ++         AIA TD N +  A+EF +      I+PI G ++ + +++        
Sbjct: 2    PQLVALAKQAGYEAIACTDENVMHGAMEFWKCCQREQIKPIFGLEILVKIEEE------- 54

Query: 90   KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
                    ++ +L    EG+  L+   SR+           + L  +Q    E  +++  
Sbjct: 55   ------TVAMTVLARDDEGFGGLMAASSRLC-----DGQDALTLDQIQPY-LEHWVLIVY 102

Query: 150  GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-YDRYRESQVVQLAYTHE 208
            G  G  +        +    +L   K       Y+ +  +   + + +   + Q+    E
Sbjct: 103  GEGGFAESELIQEDRRGLGDKLGWLKTQLP-LFYMAVSFNDASFWKLKNILLKQVCAAQE 161

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
            +P VA +   +   ED     ++  +  S  ++ K  P V    YL+  +EM  ++    
Sbjct: 162  IPTVALSKIYYGQAEDARLFKIVNGIRLSKTINDKTLPSVNG-RYLRTPAEMEQLYD--A 218

Query: 269  EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
            E L+ +  IA  C+  +      LP F   +        +  L    +AGL+ R      
Sbjct: 219  EDLQASDHIASICNVTMTQAKTTLPAFPCPQG----VSSKQYLTQLCLAGLKKRRQGQP- 273

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                    Y +RL +EL+VI  M F  YFLIV DFI++A+K  I VGPGRGS AGS+ AY
Sbjct: 274  ----EDPAYLRRLKYELDVILTMHFEDYFLIVWDFIRFARKAGIYVGPGRGSAAGSLVAY 329

Query: 389  ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
             L IT +DPL + LLFERFLNP+R+SMPD D DF  +RRDEVI+YV  KYG + VA I T
Sbjct: 330  VLGITHVDPLEYGLLFERFLNPERISMPDIDTDFPDNRRDEVIQYVAEKYGEKHVAHIAT 389

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
            FG+L AK  LRDVGR L++P  +VD LCK +P      +   AI  + RF +   AD   
Sbjct: 390  FGTLGAKQVLRDVGRVLEIPLREVDMLCKAVPFGVKMTLQT-AIQQNPRFHQMVYADRRY 448

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
              L E + ++EGL RH STHAAGIV     L Q+ P  R + +DL  TQ+ M+ +E+ GL
Sbjct: 449  QELYETALRIEGLPRHVSTHAAGIVFSRAELDQICPTIR-IENDLLSTQYTMEHLEELGL 507

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            IK DFLGL+ LT++   +  + QR    ++  IP DD +TY LL    T+GIFQLES GM
Sbjct: 508  IKMDFLGLRNLTIIDDIVQRVHQRQPL-NIMKIPLDDAKTYALLRKVDTVGIFQLESEGM 566

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            +  +  MQP C +DI+A ++L+RPGP++NI  Y   +     +  +HP + P+L+ T GV
Sbjct: 567  KNLIRKMQPACFDDIVATIALFRPGPMENIPEYLRCRTDPSAVHYLHPDLKPILESTYGV 626

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            +IYQEQ+MQ AQ ++G+SL+ ADVLRRAM KK  +E+   ++ FI G  + G  + +A  
Sbjct: 627  MIYQEQIMQTAQKMAGFSLARADVLRRAMSKKKLKELQSLQKEFIGGCIQQGYEEKLANE 686

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++EL+ KFA+YGFNKSH+ AY +++YQ +++K ++P+EF  + +   +    K  ++  +
Sbjct: 687  VYELILKFANYGFNKSHSVAYGLLAYQLSYLKANFPLEFYTSLLNSVIGAEGKTAEYIDE 746

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT-ARHIMEASADKPFDSLED 867
             R+  +QI+ PSVN   V + +    I Y L  IK +G+    + + E   + PF    D
Sbjct: 747  CRRHQVQILGPSVNASDVRYLIEGEAIRYPLLGIKNIGSAACMQLLAERQENGPFQDYYD 806

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F +R+ +++LNR+++E+L+ AGALD F  +R  L  SL+    Y   V +        I 
Sbjct: 807  FVTRMLTRRLNRKMIEALIDAGALDEFHANRQSLRLSLEEAISYGDLV-RIEVGGQVRI- 864

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              + G  S  + +   + E+   R E E+  LGFY   HP+   K   +K  I+      
Sbjct: 865  --DLGLVSKPVMV--MAKEDPIERSEREREALGFYLCSHPILQVK---KKFQIQTEPLVR 917

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +G  I     +   +Q +T+KG  + +    +   + +    P
Sbjct: 918  LMAKGGFIEGFVYLQRVRQHRTKKGDLMAFAVGVDETAQIDLVVMP 963


>gi|239637978|ref|ZP_04678939.1| DNA polymerase III subunit alpha [Staphylococcus warneri L37603]
 gi|239596541|gb|EEQ79077.1| DNA polymerase III subunit alpha [Staphylococcus warneri L37603]
          Length = 1064

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/1024 (32%), Positives = 534/1024 (52%), Gaps = 81/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H+SY LL  +L ++++++K   +    +AITDTN L+   +F      AGI P+ 
Sbjct: 3    AYLNIHTSYDLLNSSLRISDVVNKAKNEGIETLAITDTNVLYGYPKFYDACIEAGIHPVF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +        T             VLL    +G + L +L S + +    K+   I
Sbjct: 63   GMTVYLTDGLYQLET-------------VLLAQNNDGLKDLYQLSSAIKM----KEKEDI 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             + WL+      +I+  G                  E+    F + F D+ +V L +   
Sbjct: 106  PIEWLKRYANHLIIIFKG-----------------VEEHHQLFIEAFHDKKHVYLNQDCI 148

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                R               V  N   +L++ED +    L A+  ++ +          +
Sbjct: 149  AIENR-------------SFVWLNTMRYLNKEDADTISALQAIKENSKLDLVAEQEDYHE 195

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            H   N++E+ ++     E +  T EIA+ C+  L  H  +LP+F     +          
Sbjct: 196  HVF-NKNELRNL-EINDELIIKTDEIAQLCTAELNYHQSLLPQFQTPNGE---------- 243

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
               +   L  +L +       +  DY +RL  E ++I  M F  YFLIV+D I +AK ++
Sbjct: 244  --LSKTYLWQKLEEKLNHLNLNRPDYWERLKHEYDIITNMGFEDYFLIVSDLIHYAKTHD 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ + KLIP+     ++L+ 
Sbjct: 362  QYVQEKYGQLHVSGIVTFGHLLARAVARDVGRIMGFEEITLNEISKLIPHKLG--ITLEE 419

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  F++    +   +R  EI +KLEGL RH STHAAGI+I D  L +  P+      
Sbjct: 420  AYQNDEFKQFVHRNYRHERWFEICKKLEGLPRHTSTHAAGIIINDHALYEYAPLTLGDTG 479

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + ++ + +   + +++  IPFDD + + 
Sbjct: 480  --LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIINQVKKDLNISIEIESIPFDDPKVFE 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R+ L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R+    K
Sbjct: 538  LLSQGDTTGIFQLESDGVRRVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRQDPSK 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +H  + P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++
Sbjct: 598  VEYLHEDLAPILKNTYGVIIYQEQIMQIASQFANFSYGEADILRRAMSKKNRAVLESERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ GA +NG  + ++  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A 
Sbjct: 658  HFVDGAKQNGYDEYMSKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPNYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K      +A+  +I I+PP++N     +K  ++ IY SL AIKGVG  + 
Sbjct: 718  ILSNVIGSEKKTAAMIDEAKHQSITILPPNINESYWFYKATNDGIYLSLGAIKGVGYQSV 777

Query: 851  RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I++    +  F    DF  R+  +   R++LESL+  GA D FG +R  LL S+D + 
Sbjct: 778  KLIVDERYQNGDFKDFFDFARRLPKRVKTRKLLESLILVGAFDIFGKNRATLLHSIDQVI 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 +E++     + +F      F+ K + E+    +  +  E E+  LGFY S HP++
Sbjct: 838  DQVTDIEQD-----DMLFDF----FTPKQSYEEKEELSDQLISEYEKEYLGFYISKHPVE 888

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                   K       +         I +       ++ +T+ G  + +VT ++     + 
Sbjct: 889  ---KEFNKKQYLTIYKLSNAKNYQPILV--QFNQIKRIRTKNGQNMAFVTLNDGVHLLDG 943

Query: 1030 NFFP 1033
              FP
Sbjct: 944  VIFP 947


>gi|254523352|ref|ZP_05135407.1| DNA polymerase III, alpha subunit subfamily, putative
            [Stenotrophomonas sp. SKA14]
 gi|219720943|gb|EED39468.1| DNA polymerase III, alpha subunit subfamily, putative
            [Stenotrophomonas sp. SKA14]
          Length = 1036

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/1048 (27%), Positives = 469/1048 (44%), Gaps = 90/1048 (8%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             + P +  L   S++S   GA     +  + A     A+AITD  +L   +   Q A   
Sbjct: 3    SELPGYAELHCLSAFSFQRGASIAEELFARAAGQGYRALAITDECSLAGIVRAWQAAKTH 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+  I+G +  ++                  P + LL +    Y  L +L++        
Sbjct: 63   GVALIVGAEFQVEDG----------------PKLALLCTDQTAYAGLCQLITTCRRR-AA 105

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            K   R     L  +               +   +       A   L   +  F DRL++ 
Sbjct: 106  KGEYRCLRDDLLGLPDG------------LLCLWLDRQP--AATDLELLRTGFNDRLWLA 151

Query: 186  LQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            ++ H  +D     Q++Q     H LPLVA+ +            D L A+ H   V++  
Sbjct: 152  VELHHEHDDAHRLQLLQAFGERHRLPLVASGDVHMHVRRRRALQDTLTAIRHRCSVAEAG 211

Query: 245  -RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R     + +L+ R+ +  ++    E L  T+ IA RC F L+      PR +  E  D 
Sbjct: 212  WRLFPNGERHLRPRTALAQLYPR--ELLAETLRIAERCHFTLEQLQYTYPRELVPEGHD- 268

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                ++ LR     G+  R   G           R++++ EL +I +  ++ YFL V D 
Sbjct: 269  ---PDSWLRVLVERGIPWRWKNGIEPAQ------RKQIEHELALIRQKNYASYFLTVQDI 319

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+  +I +  GRGS A S   + L +T+IDP R +LLFERF++ +R   PD DIDF 
Sbjct: 320  VRFARSKDI-LCQGRGSAANSAVCFVLGVTEIDPARSNLLFERFISAERDEPPDIDIDFE 378

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV++YV N+YG ER A      S + ++A+RDV RAL +P  QV+ L   + +  
Sbjct: 379  HERREEVLQYVFNRYGRERAALTAVAISYRGRSAIRDVARALGLPMDQVNELGAAMDHWG 438

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             H      + +  R R      P + RLL ++ +L    RH S H  G VI + PLS LV
Sbjct: 439  GHV----PLPETLRERGFDPETPLMRRLLSLTAELIDFPRHLSQHPGGFVISEHPLSTLV 494

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIP 602
            P+     +D  V Q++   ++  GL+K D L L  LT ++K L  L Q G+    +  I 
Sbjct: 495  PVENAAMADRTVIQWDKDDLDATGLMKVDCLALGMLTAIRKCLAMLQQHGLHSGRMDAIE 554

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             DD  TY +++   T+G+FQ+ES      L  MQP    D++  V++ RPGPI  D +  
Sbjct: 555  DDDTPTYDMISAADTIGVFQIESRAQMAMLPRMQPRNFYDLVIEVAIVRPGPIQGDMVHP 614

Query: 661  YNNRKN-----------GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            Y  R+              E+ +   P ++ +   T GV ++QEQVMQ+A   +GY+  E
Sbjct: 615  YLERRRLLREQGPEALDNLEEPLYP-PQLERVFARTLGVPLFQEQVMQLAVDAAGYTPGE 673

Query: 710  ADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD LRR+M   K +  ++  +E+ ++G  KNG S+    ++FE +  F DYGF +SHAA+
Sbjct: 674  ADALRRSMAAWKRRGGLEPHREKLLAGMLKNGFSREYGEHLFEQIKGFGDYGFPESHAAS 733

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +A+++Y + W+K H+P  F A+ +  +        +  QDAR+  I+++P  V     D 
Sbjct: 734  FALLTYASCWLKCHHPAAFTASLINSQPLGFYSPDQLLQDARRHGIRVLPLDVRHSDWDC 793

Query: 829  KV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
             +    G   I   L  I G      + IM   A +PFD + D C R    +  + +L  
Sbjct: 794  TLDISKGATAIRLGLRLIDGCNEPAVQAIMRERARRPFDDVGDLCQRTALDRRQQGLL-- 851

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
               AGAL      R +    +  +                 +F H + T   ++ L   S
Sbjct: 852  -ADAGALRGLSGHRHRARWDISGV------------ENRLPLFDHARATAEARVPLPLPS 898

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + + R  G     HP+   +  LR  G     +  A   G  +R+A +V  +
Sbjct: 899  AWED---MQADYRSTGTTLGRHPISFLRAQLRTRGCLDAAQLAAHGHGRRVRIAGLVRMR 955

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            Q+ +T  G  + ++T  +      A  +
Sbjct: 956  QRPQTASG--VTFLTLEDETGMVNAVVW 981


>gi|119475666|ref|ZP_01616019.1| DNA polymerase III, alpha subunit [marine gamma proteobacterium
            HTCC2143]
 gi|119451869|gb|EAW33102.1| DNA polymerase III, alpha subunit [marine gamma proteobacterium
            HTCC2143]
          Length = 1044

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/1034 (24%), Positives = 458/1034 (44%), Gaps = 70/1034 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA     ++ + A     A+ I+D  +    +     A +  I+
Sbjct: 6    PDYAELHCISNFTFLRGASHPEELVTQAAELGYRAVTISDECSFAGIVRAHMAAKSCNIK 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG +  ++                    ++LL +    Y ++  L+S+  L    K S
Sbjct: 66   LIIGSEFYLNENIR----------------LLLLATDKTAYSQISSLISKARLRSP-KGS 108

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
              I L   Q      L +     +         +  +  +K     K +F   L++ +  
Sbjct: 109  YEISLKDFQRESPHYLAIWLVNDA-------LTDEQEANQKIAEQLKSVFQQSLWMGINL 161

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQKDRP 246
              + + + R  Q  ++A  + +P+ A+ N            DV+ A+  +T +    ++ 
Sbjct: 162  PRKSHQQQRYLQCYEIAKRYHIPMTASGNVHMHVAARKPLQDVVTAIRLNTNIQRLGNKL 221

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +   + +L +R ++ S++   PE L  T++IA RC F L       P  I          
Sbjct: 222  QANAELHLHSRKQLASLYP--PELLAETLQIAARCQFTLDSLNYQYPDEIVPPN----TT 275

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     G   R            +     ++ EL +I  MK+  YFL V D +Q+
Sbjct: 276  ATQFLRELTEDGARQRWPDHI------PETVISLIEKELALIHEMKYEQYFLTVYDIVQF 329

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I +  GRGS A S   Y L IT++DP R  LLFERF++ +R   PD D+DF  +R
Sbjct: 330  ARNQKI-LCQGRGSAANSAVCYCLFITEVDPARSQLLFERFISKERDEPPDIDVDFEHER 388

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++Y+  KYG ER A   T  + + ++A+RDVG+AL    + VD+L K + +    P
Sbjct: 389  REEVMQYIYRKYGRERAALAATVITYRPRSAVRDVGKALGFDQALVDKLAKSL-SWWKKP 447

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L  + + ++ ++  ++       L++  ++    RH S H  G +I   P+S LVP+ 
Sbjct: 448  QQLDELLNRAQVQQRSIS---AQLFLQLVDEILRFPRHLSQHVGGFIICREPISMLVPLE 504

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----RGVKVDLSLIP 602
                 +  + Q++   IE  GL+K D L L  L+ ++KSL +++      G +  L  IP
Sbjct: 505  NAAMKNRTIIQWDKTDIESLGLMKIDVLALGMLSAIRKSLGYISDFEETNGKEFQLDNIP 564

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--V 660
             +D  TY +L    T+G+FQ+ES      L  ++P    D++  +++ RPGPI   +   
Sbjct: 565  AEDKATYDMLCKADTIGVFQIESRAQMNMLPRLRPQTFYDLVIQIAIIRPGPIQGGMVHP 624

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  R+ G E I   +  ++ +L  T GV I+QEQV+Q+A + +G+S  EAD LRRA+   
Sbjct: 625  FLRRRQGLESITYANAGLEAVLGRTLGVPIFQEQVIQLAMVAAGFSGGEADQLRRAITSW 684

Query: 721  IK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
             +   +D  +++ I+G  + G S   A  +F  L  F  YGF +SH+A++A+++Y ++W+
Sbjct: 685  GRNGHLDLFRDKLINGMLERGYSIDFADRLFNQLRGFGAYGFPESHSASFALLAYASSWI 744

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYS 838
            K ++P  F    +  +        +  QDAR+  +QI+P  +N    D  +    +    
Sbjct: 745  KCNHPGAFYCGLLNSQPMGFYAPAQLVQDARRHGVQILPVCINHSQWDHCLMTRHVLRLG 804

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
               +KG+   +A  ++ A AD+ F S+ DF  R    +  +  L   V + A  CF   R
Sbjct: 805  FRLLKGMHRKSAERLVTARADRSFSSMADFIQRTHINRQEQNCL---VRSDAFQCFNSHR 861

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             Q    +  +++               +F  E     D   +   +        + +   
Sbjct: 862  YQSQWQISAVEES------------RPLFNVESDAVLDDHIV--LAAPKEHEEIQWDYSY 907

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             G     HP+ + +            +      G+ + +A +V  +Q+  T  G  + ++
Sbjct: 908  TGLTLRRHPMALLRENQLLHRCTRATDLATIEHGHIVHIAGLVTCRQRPGTATG--VLFI 965

Query: 1019 TFSEPAKEYEANFF 1032
            T  +         +
Sbjct: 966  TLEDETGYCNVIVW 979


>gi|325062696|gb|ADY66386.1| DNA polymerase III alpha subunit [Agrobacterium sp. H13-3]
          Length = 1091

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/1051 (26%), Positives = 457/1051 (43%), Gaps = 87/1051 (8%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P +  LQV + +S L GA S + + ++       A+ I D N+L +     + A   G
Sbjct: 2    STPRYAELQVTTHFSFLRGASSCDELFEQAKNLGIEALGIVDRNSLAAIPRAYEAADNHG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+ +IGC                +       S+++       Y RL  L+S +     GK
Sbjct: 62   IRLVIGC----------------RLDLDDDLSVLVYPMDRPAYGRLCRLLS-VGKKRGGK 104

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R+    L   G   +++L    +             +   RL   K  F DR Y+ L
Sbjct: 105  GKCRLTWDDLVAYGEGLIVVLLADLA-----------DDLCALRLRRLKAAFADRAYMAL 153

Query: 187  Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD- 244
              R R  D+ R  ++  +A   ++P V TN+ LF   E     DV+  + H+  + +   
Sbjct: 154  SLRRRPNDQMRLFELSNMAAAADVPTVVTNDVLFHVPERRMLQDVVTCIRHNCTIDEAGF 213

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R     D Y+K   EM  +F+  PEAL  ++EIA+RC+F L+      P    +E     
Sbjct: 214  RRERHADRYMKPPQEMHRLFARYPEALARSLEIAKRCTFSLKELVYQYP----EERSLPG 269

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L          R   G   K        + L  EL +I R++++ YFL V   +
Sbjct: 270  LTAQQALEKLVWEAAAGRYPDGLPEK------VEKALHHELGLIGRLEYAPYFLTVNAIV 323

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            Q+A+  NI +  GRGS A SV  Y L IT IDPL+  LLFERF++ +R   PD D+DF  
Sbjct: 324  QFARGENI-LCQGRGSAANSVVCYVLGITAIDPLKVDLLFERFVSEERREPPDIDVDFEH 382

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EVI++V N YG ++ A        + + ALRDVG+ L +P      L   +     
Sbjct: 383  QRREEVIQWVYNTYGRDKAALCSVVTRYRGRGALRDVGKVLGLPEDLTKLLSSQVWRWSE 442

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 Q    +       + D  +    E++ +L G  RH S H  G V+    L +LVP
Sbjct: 443  GVGEKQVQELN-----LNMEDRRLKLAFELANQLVGTPRHHSQHPGGFVLTHDRLDELVP 497

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +      D  + +++   I+    +K D L L  L+ +++  + L +R  VK DL+ +P 
Sbjct: 498  IEPAAMDDRQIIEWDKDDIDIVKFMKMDCLALGMLSCMRRGFNMLEERTGVKYDLATVPQ 557

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            DD  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y
Sbjct: 558  DDDPTYAMIQKADTLGTFQIESRAQMSMLPRLKPKIFYDLVIQVAIVRPGPIQGDMVHPY 617

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R++ KE+       +  +L +T GV ++QEQ M++A   +G+S  +AD LRRAM   K
Sbjct: 618  LRRRDKKEEEHYPKEELRGVLGKTLGVPLFQEQAMRVAIECAGFSPGKADQLRRAMATFK 677

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                + K ++  I G    G  +  A  IF+ L  F  YGF +SHAA++A+I+Y ++W+K
Sbjct: 678  NVGTISKFRQDMIDGMVDRGYEQEFAERIFKQLEGFGSYGFPESHAASFALIAYASSWLK 737

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-------- 832
             H+P  F  A +  +        +  +DAR   +++ P  VN    D  +          
Sbjct: 738  CHHPDIFCTALLNSQPMGFYAPAQIVRDARDHGVEVRPVCVNNSRFDCSLEPTGKKNANG 797

Query: 833  ---NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                 +   L  +KG+    A  I+    D+ F S++D   R     +    L  L  A 
Sbjct: 798  KERYAVRLGLRMVKGLSNDHAAKIVACRQDRDFVSVDDLWRRA---GVPAAALVCLAEAD 854

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--------SDKITLE 941
            A           L SL   ++ A W  K   ++   +FA   G             + L 
Sbjct: 855  AF----------LPSLSLSRREALWAIKALRDEPLPLFAAAAGRENAVVDELSEPSVALR 904

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
              +     V    +   +G     HP+   +  L +  I    E+V    G  +  A +V
Sbjct: 905  PMTDGGEVV---QDYGHVGLTLREHPMSFLRRDLSRRRIVSCAEAVRVRDGTWLETAGLV 961

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +Q+  + KG  + ++T  +      A  +
Sbjct: 962  LVRQRPGSAKG--VIFMTLEDETGIANAVLW 990


>gi|262201696|ref|YP_003272904.1| DNA polymerase III subunit alpha [Gordonia bronchialis DSM 43247]
 gi|262085043|gb|ACY21011.1| DNA polymerase III, alpha subunit [Gordonia bronchialis DSM 43247]
          Length = 1090

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/1036 (27%), Positives = 467/1036 (45%), Gaps = 72/1036 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S  +  L  HS+YS L+GA     ++ +       A++ITD +  +  + F++ A   G
Sbjct: 63   SSVPYAELHAHSAYSFLDGASMPEEMVTEAQRLDLRALSITDHDGFYGIVRFAEAAREFG 122

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +  + G +L +          +     P    +++L   +EGY+RL   ++  +++   K
Sbjct: 123  MPTVFGSELSLAHD-----VARTGHNDPPGEHLLVLARDSEGYRRLSRTIADAHMVAGEK 177

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
              +R     L        ++LTG   G + RA     +  AE  L      F  D + V 
Sbjct: 178  GLLRYERESLSSAAGGHWLILTGCRKGAVRRALDRGGASAAEVALRDLVDRFGRDDVAVE 237

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS-QK 243
            L       D  R + +  +A    +  VAT  + F           + AV   T +    
Sbjct: 238  LTASGLPDDDDRNAALAGVARLVGVATVATTGAHFAGPRRRRLAMAMAAVRARTDIDTIA 297

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L +  EM  +     +A++N V++A  C+F L + AP LP F   +    
Sbjct: 298  GWMPGVAGAHLCSGDEMARLLPAHRDAIDNAVQLAADCAFELGLIAPQLPPFDVPDG--- 354

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E   LR   +     R          H Q YR +++ EL ++  + F GYFL+VAD 
Sbjct: 355  -HTEITWLRELTMTRARRRYG----TPAQHPQAYR-QIEHELAIVETLNFPGYFLVVADI 408

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + + K N+I +  GRGS A S   YAL IT++DP+   LLFERFL+P+R   PD D+D  
Sbjct: 409  VDFCKANDI-LCQGRGSAANSAVCYALGITNVDPVANKLLFERFLSPERDGPPDIDVDIE 467

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR+E I+YV  +YG +  AQ+    + + ++A+RD+ RAL     Q D          
Sbjct: 468  SDRREEAIQYVYRRYGRDYSAQVANVITYRGRSAVRDMARALGYGTGQQDAWS------- 520

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                              RL D +   + +++ ++ G+ RH   H+ G+VI DRP++ + 
Sbjct: 521  ------------------RLPDEAPPEVADLAGEILGMPRHLGIHSGGMVICDRPIADVC 562

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P       +  V Q++       GL+KFD LGL  L+ L  ++D +A+   + VDL+ + 
Sbjct: 563  PTEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGLHVDLAELD 622

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VV 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI       
Sbjct: 623  LSEPAVYEMLCRADSVGVFQVESRAQMATLPRLRPRKFYDLVVEVALIRPGPIQGGSVHP 682

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R++G+EK    HP +   L+ T GV ++QEQ+MQ+A  ++G+  + AD LRRAM  K
Sbjct: 683  YIRRRHGQEKPTVEHPSMHKALERTLGVPLFQEQLMQLAVDVAGFDAAGADQLRRAMGSK 742

Query: 720  KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E M++ ++RF  G    +GI+  +A  IFE ++ FA++GF +SH+ ++A + + ++W
Sbjct: 743  RSPERMERLRQRFYDGMRDLHGITGEVADRIFEKMSAFANFGFPESHSQSFASLVFYSSW 802

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--RIY 836
             K H+P  F AA +  +       +    DAR+  +++  P +N       + +    + 
Sbjct: 803  FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVRVHRPDINVSLPHATLENEGLEVR 862

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L  ++GVGT  A  I+E   AD P+  + D   R     L  R LE L  AGA D FG
Sbjct: 863  LGLDGVRGVGTEVAERIVERRDADGPYRDITDVSRRA---GLTTRELEGLAGAGAFDVFG 919

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR Q L                  +    +      + +   TL   S          +
Sbjct: 920  VSRRQALWEAGAA--------ATVRDDQLPL-----ASAATTPTLPGLS---DVELAATD 963

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G   + +P    +P LR MG+   E  ++   G+ + +   V  +Q+  T  G  +
Sbjct: 964  AWATGITPTSYPTQFLRPRLRAMGVLAAETLLSVPDGSRVVVGGAVTHRQRPATASG--V 1021

Query: 1016 GWVTFSEPAKEYEANF 1031
             ++   +         
Sbjct: 1022 TFINLEDETGMVNVVC 1037


>gi|194366156|ref|YP_002028766.1| error-prone DNA polymerase [Stenotrophomonas maltophilia R551-3]
 gi|194348960|gb|ACF52083.1| DNA polymerase III, alpha subunit [Stenotrophomonas maltophilia
            R551-3]
          Length = 1036

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/1045 (27%), Positives = 460/1045 (44%), Gaps = 90/1045 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S   GA     +  + A     A+AITD  +L   +   Q A   G+ 
Sbjct: 6    PGYAELHCLSAFSFQRGASIAEELFARAAGQGYRALAITDECSLAGIVRAWQAAKTHGVA 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  ++                  P + LL +    Y  L +L++        K  
Sbjct: 66   LIVGAEFQVEDG----------------PKLALLCTDQAAYAGLCQLITTCRRR-AAKGE 108

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R     L  +               +   +       A   L   +  F DRL++ ++ 
Sbjct: 109  YRCLREDLLGLPDG------------LLCLWLDRQP--AAIDLELLRAGFDDRLWLAVEL 154

Query: 189  HRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
            H  +D  R   Q+      H LPLVA+ +            D L A+ H   V++   R 
Sbjct: 155  HHEHDDARRLQQLQAFGERHRLPLVASGDVHMHVRRRRALQDTLTAIRHRCSVAEAGWRL 214

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R+ +  ++    E L  T+ IA RC F L+      PR +  E  D    
Sbjct: 215  FPNGERHLRPRTALAQLYP--SELLAETLRIAERCHFTLEQLQYTYPRELVPEGHD---- 268

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ LR     G+  R   G           R++++ EL +I    ++ YFL V D +++
Sbjct: 269  PDSWLRVLVERGIPWRWKGGIEPAQ------RKQIEHELALIREKNYASYFLTVQDIVRF 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A S   + L +T+IDP R +LLFERF++ +R   PD DIDF  +R
Sbjct: 323  ARSQDI-LCQGRGSAANSAVCFVLGVTEIDPARSNLLFERFISAERDEPPDIDIDFEHER 381

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV  +YG ER A      S + ++A+RDV RAL +P  QV+ L   + +   H 
Sbjct: 382  REEVLQYVFKRYGRERAALTAVAISYRGRSAIRDVARALGLPMDQVNELGAAMDHWGGHV 441

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                 + +  R R      P + RLL ++ +L    RH S H  G VI + PLS LVP+ 
Sbjct: 442  ----PLPETLRERGFDPETPLMRRLLALTAELIDFPRHLSQHPGGFVISEHPLSTLVPVE 497

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDD 605
                +D  V Q++   ++  GL+K D L L  LT ++K L  L Q G+    +  I  DD
Sbjct: 498  NAAMADRTVIQWDKDDLDATGLMKVDCLALGMLTAIRKCLAMLQQHGLHSGRMDAIEDDD 557

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
              TY ++    T+G+FQ+ES      L  +QP    D++  V++ RPGPI  D +  Y  
Sbjct: 558  KPTYDMICAADTIGVFQIESRAQMAMLPRLQPREFYDLVIEVAIVRPGPIQGDMVHPYLE 617

Query: 664  RK-----------NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            R+           N  +  +   P +  +   T GV ++QEQVMQ+A   +GY+  EAD 
Sbjct: 618  RRRLLREQGPDALNDPDNPLYP-PQLKRVFARTLGVPLFQEQVMQLAVDAAGYTPGEADA 676

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRR+M   K +  ++  +E+ ++G  KN  S+    ++FE +  F DYGF +SHAA++A+
Sbjct: 677  LRRSMAAWKRRGGLEPHREKLLAGMLKNNFSREYGEHLFEQIKGFGDYGFPESHAASFAL 736

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV----D 827
            ++Y + W+K HYP  F A+ +  +        +  QDAR+  I+++P  V         D
Sbjct: 737  LTYASCWLKCHYPAAFTASLINSQPLGFYSPDQLLQDARRHGIRVLPVDVRHSDWDCTLD 796

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            F  G   I   L  + G      R IM   A +PFD + D C R    +  + +L     
Sbjct: 797  FSKGPAAIRLGLRLVDGCNEPAVRAIMRERARRPFDDVGDLCQRTALDRRQQGLL---AD 853

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGAL      R +    +  +                 +F   + T   ++ L   S   
Sbjct: 854  AGALRGLSGHRHRARWDISGV------------ENRLPLFDQARATAEARVPLPLPSAWE 901

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                 + + R  G     HP+   +  LR  G     +      G  +R+A +V  +Q+ 
Sbjct: 902  D---MQADYRSTGTTLGRHPISFLRAQLRSRGCLDAAQLAGHGHGRRVRIAGLVRMRQRP 958

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
            +T  G  + ++T  +      A  +
Sbjct: 959  QTASG--VTFLTLEDETGMVNAVVW 981


>gi|315499387|ref|YP_004088190.1| DNA polymerase iii, alpha subunit [Asticcacaulis excentricus CB 48]
 gi|315417399|gb|ADU14039.1| DNA polymerase III, alpha subunit [Asticcacaulis excentricus CB 48]
          Length = 1075

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/1043 (25%), Positives = 457/1043 (43%), Gaps = 78/1043 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
             P +V LQ  S +S L+G  S + +  +  A    A+AI D N L   +     A A G+
Sbjct: 2    PPPYVELQCASYFSFLQGCSSPDELFVRAQALGLEALAIADRNTLAGMVRAHVAAKATGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+GC LD+                    S+++  +    Y RL  L++          
Sbjct: 62   RLIVGCHLDLTDG----------------ASLLVYPTDRTAYARLSRLLTVGKARG---G 102

Query: 128  SVRICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              R  L+W   E    GLI +               + +V  +RL  FK +F +R ++ L
Sbjct: 103  KGRCDLTWQDVEDFNAGLIGI----------FIPEEADEVCAQRLRRFKTIFAERAHMAL 152

Query: 187  QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS-QKD 244
               R   D  R   +  LA    +P V TN+ L+   E  + HDV+  + H+  +    D
Sbjct: 153  TLRRRQGDHLRLHDLSNLAARVRVPTVITNDVLYHVHERDQLHDVVTCIRHNCTIDTMGD 212

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  D YLK   EM  +F     AL  + EIA +C F L       P    +E     
Sbjct: 213  LRHCYADRYLKTPEEMYRLFPGYEGALRRSAEIAEQCRFSLDELKYQYP----EEKLLPG 268

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + L+     G + R  +G        Q     L  EL +I ++ ++ YFL V   +
Sbjct: 269  LSAIDALKKLTWEGAKRRYPEGV------PQKVIDLLRHELTLIEKLNYAPYFLTVNAIV 322

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+  +I +  GRGS A S   + L IT +DP R  LLFERF++ +R   PD D+DF  
Sbjct: 323  NFARSQDI-LCQGRGSAANSCVCFVLGITSVDPDRNDLLFERFISEERGEPPDIDVDFEH 381

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EV+++V   YG    A        + + A+R V + +  P   +  + K + +   
Sbjct: 382  QRREEVLQWVYETYGRSHAALTAVVTRFRTRGAIRAVLKVMGYPEDTIKLISKQVTHWHR 441

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              ++L     ++      L D  +   +++   L  + RH S H  G V+    L +LVP
Sbjct: 442  GGMTL----AEAEGLGLNLNDRRLKLAIDLHLLLMNVPRHLSQHPGGFVLTHDRLDELVP 497

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +         V +++   I+    +K D LGL  ++ +++SLD LA+ +G+++DL+ IP 
Sbjct: 498  IEPARMKARQVIEWDKDDIDVLAFMKVDCLGLGMMSCMKRSLDLLAEVKGIELDLATIPA 557

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661
            +D  TY ++    T+G+FQ+ES   +  L   +P    D++  V++ RPGPI   +   Y
Sbjct: 558  EDPRTYAMIRKADTVGVFQIESRAQQAMLPRTKPRTFYDLVVQVAIVRPGPIQGGMVHPY 617

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R+ G E++      ++ +L +T GV ++QEQ M +    +G+S   AD++RRAM   K
Sbjct: 618  LRRREGTEEVTYPSKELEAILSKTLGVPLFQEQAMSVVIKAAGFSPGRADMVRRAMATFK 677

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                + K  +  + G  KNG ++  A  IF  L  F  YGF +SHA ++A+I+Y ++WMK
Sbjct: 678  HTGGVSKFHDEIVQGMLKNGYTQDYAEQIFSQLEGFGSYGFPESHAYSFALIAYASSWMK 737

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDNR 834
             H+P  F AA +  +        +  ++A++  +++ P  VN    D  +      G   
Sbjct: 738  CHHPDVFCAALLNSQPMGFYAPAQLVRNAQEHGVEVRPVCVNASHWDCTLEETNRPGRYA 797

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-C 893
            +      +KG+ +     ++    D PF S+ D   R  +     R L     A A    
Sbjct: 798  VRLGFRLVKGLKSADIAKLILHRGDYPFTSISDLWKRARTPVATLRQL---AKADAFSPA 854

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK----FSVENSS 949
             G +R   L ++  ++                +F H +        + +         + 
Sbjct: 855  LGLNRRDALFAIRALRDD-----------PLPLFDHLEAIAGGTHEMPEPQVSLKPMTAG 903

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 +   LG     HP+   +  LR+ G+    +++A+  G N+ +A MV+ +Q+  +
Sbjct: 904  AVVVEDYNHLGLTLGTHPVSFLREELRQRGLMPCADAMASKDGRNVSVAGMVLVRQKPGS 963

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
              G  + ++T  +  ++     +
Sbjct: 964  ANG--VMFMTLEDETRDANVVVW 984


>gi|322648192|gb|EFY44659.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. OH_2009072675]
          Length = 826

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/698 (44%), Positives = 439/698 (62%), Gaps = 17/698 (2%)

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP
Sbjct: 1    MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNP 60

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY 
Sbjct: 61   ERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYG 120

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
             VDR+ KL+P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA 
Sbjct: 121  FVDRISKLVPPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAG 179

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + 
Sbjct: 180  GVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMIN 239

Query: 591  QRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            +R        +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IA
Sbjct: 240  KRREKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIA 299

Query: 646  LVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQI 698
            LV+L+RPGP+ + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQI
Sbjct: 300  LVALFRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQI 359

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+LSGY+L  AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA 
Sbjct: 360  AQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAG 419

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+P
Sbjct: 420  YGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILP 479

Query: 819  PSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKK 876
            P +N+    F V D     Y + AIKGVG      I++A      F  L D C+R D+KK
Sbjct: 480  PDINSGLYHFHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKK 539

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFS 935
            LNRRVLE L+ +GA D  G  R  L+ SL +  K A    K       ++F    +    
Sbjct: 540  LNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQ 599

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNN 994
             + +          V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  
Sbjct: 600  IEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKV 659

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               A +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 660  TTAAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 697


>gi|15891704|ref|NP_357376.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58]
 gi|71151849|sp|Q8UAY9|DNE21_AGRT5 RecName: Full=Error-prone DNA polymerase 1
 gi|15160162|gb|AAK90161.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58]
          Length = 1091

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/1052 (26%), Positives = 464/1052 (44%), Gaps = 88/1052 (8%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P +  LQV + +S L GA S + + ++       A+ + D N+L +     + A   G
Sbjct: 2    SAPRYAELQVTTHFSFLRGASSCDELFEQAKNLGIEALGVVDRNSLAAIPRAYEAANNHG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +IGC                +       S+++       Y RL  L+S +     GK
Sbjct: 62   VRLVIGC----------------RLDLDDDLSVLVYPMDRAAYGRLCRLLS-VGKKRGGK 104

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R+    L   G   +++L    +             +   RL   K  F DR Y+ L
Sbjct: 105  GKCRLSWDDLVAYGEGLIVVLLADLA-----------DDLCALRLRRLKAAFADRAYMAL 153

Query: 187  Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD- 244
              R R  D+ R  ++  +A    +P V TN+ LF   E     DV+  + H+  + +   
Sbjct: 154  SLRRRPNDQMRLFELSGMAQAAGVPTVVTNDVLFHVPERRMLQDVVTCIRHNCTIDEAGF 213

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R     D Y+K   EM  +F+  PEAL  ++EIA+RC F L+      P    +E     
Sbjct: 214  RRERHADRYMKPPEEMHRLFARYPEALSRSLEIAKRCKFSLKELVYQYP----EERSLPG 269

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L       +  R   G   K        + L  EL+V+ R++++ YFL V   +
Sbjct: 270  LTAQQALEKMVWEAVPGRYPNGLPEK------VEKALHHELDVVGRLQYASYFLTVNAIV 323

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF-SLLFERFLNPDRMSMPDFDIDFC 423
            ++A+  +I +  GRGS A SV  + L IT IDP  F +L+FERF++ +R   PD D+DF 
Sbjct: 324  RYARSKDI-LCQGRGSAANSVICFVLGITAIDPALFSNLVFERFVSENRGEPPDIDVDFE 382

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR+EVI++V + YG ++ A        + + ALRDVG+ L +P      L   +    
Sbjct: 383  HQRREEVIQWVYDTYGRDKAALCSVVTRYRGRGALRDVGKVLGLPEDLTKLLSSQVWRWS 442

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                  Q    +       + D  +    E++ +L G  RH S H  G V+    L +LV
Sbjct: 443  EGVGEKQVKELN-----LNMEDRRLKLAFELANQLVGTPRHHSQHPGGFVLSHDRLDELV 497

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+     +D  + +++   I+    +K D L L  L+ +++  D L  R   K DL+ +P
Sbjct: 498  PIEPAAMNDRQIIEWDKDDIDIVKFMKMDCLALGMLSCMKRGFDLLEARTGEKYDLAAMP 557

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             DD  T+ ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D +  
Sbjct: 558  PDDPATFAMIQKADTLGTFQIESRAQMSMLPRLKPAKFYDLVIQVAIVRPGPIQGDMVHP 617

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+ GKE ++   P ++ +LK+T GV ++QEQ M+IA   + ++  EAD LRRAM   
Sbjct: 618  YLRRRQGKEPVLYEKPQLENILKKTLGVPLFQEQAMRIAMDCADFTADEADQLRRAMATF 677

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    + K KE+ ++G   NG  K  A  IF+ L  F  YGF +SHAA++A+I+Y ++W+
Sbjct: 678  KNVGTISKFKEKLVTGMVANGYDKEFAERIFKQLEGFGSYGFPESHAASFALIAYASSWL 737

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------- 832
            K H+P  F  A +  +        +  +DAR   +++ P  VN    D  +         
Sbjct: 738  KCHHPDIFCTAILNSQPMGFYAPAQIVRDARDHGVEVRPVCVNNSRFDCTLEPTGKKNDK 797

Query: 833  ----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  +   L  +KG+    A  I+ A  D+PF S++D   R     +    L  L  A
Sbjct: 798  GEERFAVRLGLRMVKGLSNDHAADIVAARQDRPFASVDDLWRRA---GVPAAALVCLAEA 854

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--------KGTFSDKITL 940
             A           L SL   ++ A W  K   ++   +FA          +      + L
Sbjct: 855  DAF----------LPSLRLARREALWAIKALRDEPLPLFAAAAIRENAVIEELQEPSVAL 904

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
               +     V    +   +G     HP+   +  L +  I    E+V    G  +  A +
Sbjct: 905  RPMTDGGEVV---QDYGHVGLTLREHPMTFLRRDLSRRRIVTCAEAVRVRDGTWLETAGL 961

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V+ +Q+  + KG  + ++T  +      A  +
Sbjct: 962  VLVRQRPGSAKG--VIFMTLEDETGIANAVLW 991


>gi|171317636|ref|ZP_02906822.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MEX-5]
 gi|171097213|gb|EDT42062.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MEX-5]
          Length = 1071

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/1049 (26%), Positives = 455/1049 (43%), Gaps = 68/1049 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASHAEELVERAAELGYRGIAITDECSLAGAPRMHVAAKAQGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G   D+   D       G  P P    +VLL    EGY  L EL+S   +    K +
Sbjct: 69   LIVGSFFDVTPDD----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISWRRMASP-KGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             ++    L     E   +        I    +   + V + ++  F+  FG R  + L Q
Sbjct: 124  YKLTSRMLSAPPAEFAHLRGMPDCFAILVPTYPVRADVLDAQVAWFRATFGARARLGLVQ 183

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D  +  ++        + +VA  +            DV+ A+     VS+     
Sbjct: 184  LQRPLDGAQREEIRAAGERRGVRIVALGDVTMHRRSCKPLQDVMTAIRVGMPVSECGYAL 243

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  +  +FS  PE L+ T  I   C F L       P  I  +       
Sbjct: 244  APNAEQHLRARGRIAKLFS--PEELDETCAILDACDFKLDTLQYEYPDEIVPKG----LT 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L  +  AG   R  QG   K         ++  EL++IAR+ +  +FL V D +++
Sbjct: 298  PTRHLEQETFAGAAARYPQGIPEK------VETQIRHELDLIARLSYEPFFLTVYDIVKY 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  NI +  GRGS A SV  Y L IT+++P + ++LFERF++ +R   PD D+DF   R
Sbjct: 352  ARSQNI-LCQGRGSAANSVVCYCLGITEVNPEQSTMLFERFISEERGEPPDIDVDFEHQR 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+++  KYGH+R A      + + +  LR+ G+AL +    VDR+ K         
Sbjct: 411  REEVIQHIYAKYGHDRAALAAAVSTYRPRGVLRETGKALGVDPMLVDRVAKAHRWFDGSR 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              LQ  A          A P +    E++ +L    RH S H+ G VI    L++LVP+ 
Sbjct: 471  DLLQQFASTG----LDPATPIIRAWAELAGRLLNFPRHLSQHSGGFVISRGKLTRLVPVE 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVD-----LSL 600
                    V Q++   +E  GL+K D L L  L+ L ++ D   A RG + D     L  
Sbjct: 527  NAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPQEDGEPFTLKH 586

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI-- 658
            IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI     
Sbjct: 587  IPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLKPRNYYDLVVEVSIVRPGPIQGGAV 646

Query: 659  VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              Y  R+  K      +I      +  +L+ T GV I+QEQVMQIA + +G++  EAD L
Sbjct: 647  HPYLKRRRIKAGEEEGEITYPSDALRVVLERTLGVPIFQEQVMQIAIVAAGFTPGEADQL 706

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM   K + ++    ++ ++G  + G ++  A  IFE +  F +YGF +SHAA++A +
Sbjct: 707  RRAMAAWKRRGDLGPYHDKIVNGMLERGYTREFAEQIFEQIKGFGEYGFPESHAASFAKL 766

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD----- 827
            +Y ++W+K H P  FLAA +  +        +  QDA++  +Q++P  V     +     
Sbjct: 767  AYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHGVQVLPIDVTQSNWEASLEA 826

Query: 828  -----FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                    G   +   L+ ++G+G   AR I  A A  PFD+++    R   ++  R + 
Sbjct: 827  LPDQPPPHGQPAVRLGLSLVRGLGEAAARRIEAARAAAPFDNVDVLARRAQLER--RDLE 884

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
                        G+ R  L Q++                   ++ A       DK  L  
Sbjct: 885  ALAAANALATLAGHRRDALWQAV-------------AAAPERDLLAAAPIDEPDKPALGA 931

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             S  +  +    +    G   + HP+ + +P LR   +    E      G   R   +V 
Sbjct: 932  PSEADDIL---ADYDTTGLTLNRHPVALLRPALRAQRLSSAAELRDRSDGRLARACGIVT 988

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            ++Q   T KG  + ++T  +         
Sbjct: 989  ARQMPGTAKG--VMFMTLEDETGCVNVIV 1015


>gi|116251876|ref|YP_767714.1| DNA polymerase III subunit [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256524|emb|CAK07609.1| putative DNA polymerase II subunit [Rhizobium leguminosarum bv.
            viciae 3841]
          Length = 1086

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/1039 (26%), Positives = 467/1039 (44%), Gaps = 72/1039 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQV + +S L GA S   +          A+ I D N+L   +   + + A G++ 
Sbjct: 2    RYAELQVTTHFSFLRGASSAEELFATAKRLGIEALGIVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC                +       SI++  +    Y RL  L++    L + +   
Sbjct: 62   VVGC----------------RLDLQDGMSILVYPTDRAAYSRLTRLLT----LGKSRGGK 101

Query: 130  RICLSWLQE--IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              C+  L +  + +EGLI +                 +    +L    ++FGD  Y++L 
Sbjct: 102  ANCILHLDDVALYSEGLIGILLPDLPD----------ETCAIQLRKMAEVFGDLAYLSLC 151

Query: 188  -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
             R R  D+ R  ++  LA  H++  V TN+ LF      +  DV+  V + T +      
Sbjct: 152  LRRRPNDQMRLHEMSNLAVRHKVKTVVTNDVLFHDPSRRQLQDVVTCVRNRTTIDDVGFE 211

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 D YLK  +EM  +FS  PEAL  T+EI  RC F L+      P  I        K
Sbjct: 212  RERHADRYLKPATEMERLFSRFPEALTRTMEIVDRCRFSLEELTYQYPEEIVVPG----K 267

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L       +  R   G  A         + +  EL +I  M+++ YFL V   ++
Sbjct: 268  TAQASLEQYVWECVPNRYPDGLPAH------VEKTIRHELALIEIMRYAPYFLTVFSIVR 321

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   + L +T IDP    LLFERF++ +R   PD D+DF  +
Sbjct: 322  FARSQGI-LCQGRGSAANSAVCFVLGVTSIDPETNDLLFERFVSQERDEPPDIDVDFEHE 380

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+++   YG  + A   T    + K A+RDVG+AL +P   +  L   +      
Sbjct: 381  RREEVIQWIYETYGRNKAALCATVTRYRTKGAIRDVGKALGLPEDLIKALSSGVWA---- 436

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              + +      R       D  +   L+++Q+L G  RH   H  G V+    L  LVP+
Sbjct: 437  -WTEEVGEKQVRELNLNPDDRRLALTLQLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPI 495

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
                  D  V +++   +E    +K D L L  LT + KS  FL Q + V +DL+ IP +
Sbjct: 496  EPASMVDRQVIEWDKDDVEALKFMKVDVLALGMLTCMAKSFAFLNQEKDVDLDLATIPQE 555

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            + +TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y 
Sbjct: 556  EAKTYAMIRKADTLGTFQIESRAQMSMLPRLKPRTFYDLVIQVAIVRPGPIQGDMVHPYL 615

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+ GKEK+    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M   K 
Sbjct: 616  RRREGKEKVEYPTPELEAVLHKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATFKF 675

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               + + K++ ++G  +NG +   A   F  L  F  YGF +SHAA++A+I+Y ++++K 
Sbjct: 676  TGGVSRFKDKLVNGMVRNGYTSEFAEKTFSQLEGFGSYGFPESHAASFALIAYASSYIKC 735

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRI 835
            H+P  F AA +  +        +  +DAR+  ++I P  VN    D  +        + +
Sbjct: 736  HFPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEIRPVCVNQSRWDCTLEPVGDTDRHAV 795

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CF 894
               +  ++G+ T  A  I+ A AD+ FDS++D   R     +    L  L  A A     
Sbjct: 796  RLGMRMVRGLATADAARIVAARADQAFDSVDDMWRR---SGVPAASLVELAEADAFHPSL 852

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            G  R   L ++  ++     +      +     A ++      + L + +  ++ V    
Sbjct: 853  GLERRDALWAIKALRDEPLPLFAAAAEREAKTIAEQQ---EPAVELRQMTQGHNVVL--- 906

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +    G     HP+   +  L +  I    E+++   G  +  A +V+ +Q+  + KG  
Sbjct: 907  DYGHAGLTLREHPVSFLRRELAERRIVTCTEAMSARDGRWLMAAGLVLVRQRPGSAKG-- 964

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + ++T  + +       +P
Sbjct: 965  VIFMTIEDESGVANVVIWP 983


>gi|169630782|ref|YP_001704431.1| error-prone DNA polymerase [Mycobacterium abscessus ATCC 19977]
 gi|169242749|emb|CAM63777.1| Error-prone DNA polymerase [Mycobacterium abscessus]
          Length = 1078

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/1038 (26%), Positives = 469/1038 (45%), Gaps = 69/1038 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS++S L+GA     ++ + A     A+AITD +  +  + F++ A   G+  
Sbjct: 41   PYAELHAHSAFSFLDGASLPEEMVQEAARLDLKALAITDHDGFYGVVRFAEAAKELGLPT 100

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----G 125
            + G           +++  G+        +++L    EGY+RL   ++  +L        
Sbjct: 101  VFGA----------ELSLGGQGNTEDSVHLLVLARGQEGYRRLSRQMAGAHLSGGTPKDR 150

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYV 184
            K   R  L  L E       +LTG   G + RA        AE+ L      F  DR+ +
Sbjct: 151  KGKPRYDLDALTEAAGGHWHILTGCRKGHVRRALAGGGPVAAERALANLVDRFGADRVSI 210

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L RH    +  R +++  LA    + ++AT  + F + E       + AV     +   
Sbjct: 211  ELNRHGHPGEDERNAELAALARGFGVGVIATTAAHFATPESGRLAMAMAAVRARKSLDDA 270

Query: 244  -DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                      +L++  EM  +FS  PE +    E+   C+F L++ AP LP F       
Sbjct: 271  AGWLDPVGGAHLRSGDEMARLFSHYPEVVTAAAELGEECAFDLRLIAPQLPPFDVPSG-- 328

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                E++ LR+ A+ G   R    A A+  +      +++ EL +IA++ F GYFL+V D
Sbjct: 329  --HTEDSWLRHLALEGAARRYGPRAGAQKAY-----AQIERELEIIAQLNFPGYFLVVHD 381

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
              Q+ ++++I +  GRGS A S   YAL +T++DP+   LLFERFL+P R   PD DID 
Sbjct: 382  ITQFCRRSDI-LCQGRGSAANSAVCYALGVTNVDPVDNGLLFERFLSPARDGPPDIDIDI 440

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D R++ I+YV NKYG E  AQ+    + + + A+RD+ +AL     Q D   K + + 
Sbjct: 441  ESDEREQAIQYVYNKYGREYAAQVANVITYRGRMAVRDMAKALGFAQGQQDAWSKQMGHW 500

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                             +A   D    ++++++++++   RH   H+ G+VI DRPL+ +
Sbjct: 501  GG-------------LADAAAVDGIPPQVIQLARQIKDFPRHMGIHSGGMVICDRPLADV 547

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601
            VP+      +  V Q++       GL+KFD LGL  L+ L   +D + +   + VDL+ I
Sbjct: 548  VPVEWARMENRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYCIDLVREHKGIDVDLAHI 607

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--V 659
               +   Y +L    ++G+FQ+ES      L  ++P C  D++  V+L RPGPI      
Sbjct: 608  NLKEQAVYEMLARADSVGVFQVESRAQMATLPRLKPKCFYDLVVEVALIRPGPIQGGSVH 667

Query: 660  VYNNRKNGKEK-IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM- 717
             Y  R N  +K     HP +   L +T GV ++QEQ+MQ+A  ++G+S +E+D LRRAM 
Sbjct: 668  PYIRRYNKIDKDWQHDHPSMAAALDKTLGVPLFQEQLMQLAVDVAGFSPAESDQLRRAMG 727

Query: 718  GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             K+  E M++ + RF  G    +GI+  +A  I+E L  FA++GF +SHA ++A + + +
Sbjct: 728  SKRSPERMERLRNRFYEGMRNLHGITGELADRIYEKLYAFANFGFPESHAQSFASLVFYS 787

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--R 834
            +W K H+P  F AA +  +       +    DAR+  + +  P VN       + +    
Sbjct: 788  SWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLSYATLENAGLE 847

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +   L A++ +G   A+ I+E      PF SL D   R+         +E+L   GAL C
Sbjct: 848  VRIGLGAVRHIGDDLAQAIVEERKVRGPFVSLLDLTGRIQLT---TAQVEALATGGALGC 904

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            F  SR + L     +   A     +R                    +          R  
Sbjct: 905  FDMSRREALW----VAGAAAAQRPDRLPG-----------VGVSSRIPALPEMGEVTRAA 949

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +    G     +P    +  L  MG+   +       G+ + +A  V  +Q+  T  G 
Sbjct: 950  ADVWATGVSPDSYPTQFLRARLDAMGVVPAKGLFGVPDGSRVLVAGAVTHRQRPATAAG- 1008

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             + ++   +         
Sbjct: 1009 -VTFINLEDETGMVNVVC 1025


>gi|170017064|ref|YP_001727983.1| DNA polymerase III, alpha subunit [Leuconostoc citreum KM20]
 gi|169803921|gb|ACA82539.1| DNA polymerase III, alpha subunit [Leuconostoc citreum KM20]
          Length = 1113

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/1030 (31%), Positives = 533/1030 (51%), Gaps = 51/1030 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQ+ S+YSLL+   ++  I+         AIA+TD N ++ A+EF QKA   GI+P+
Sbjct: 2    YAPLQILSAYSLLKNPNTITQIIRTAKDRHYGAIALTDINVMYGAVEFYQKAKDMGIKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L ++          G     T   +VL+     GYQ L+ L S          +  
Sbjct: 62   FGVTLQVN----------GLVNTSTTFPLVLIAENQTGYQNLMWLSSAKMTAQDTTMTFD 111

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + +  LQ     G+ ++       + +       +V         K+    LY+ +  H 
Sbjct: 112  LLVDHLQ-----GIHVIL-PHDSELSQLIASEYQEVDNYWHQLSNKIDDQHLYIGI--HP 163

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVT 249
                   +++ Q +  H+  LVA ++  +L+ +D     VL A+ A+  +   K   + +
Sbjct: 164  QLAPQIRARLAQFSQIHQASLVALDDVDYLNADDAFTTQVLKAIDANVKLDGIKALAQQS 223

Query: 250  PDHYLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              H L +  ++   + D   L  A +N  ++  R    L           +   +     
Sbjct: 224  GSHVLVDFEQLRQSYQDDEALKLAFKNNEQLVARSHVSLTFKQTTALPPFQLPAETA--N 281

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+N A+ GL  ++    I    HAQ Y +RL  EL +I ++ F+ YFLIV D + +
Sbjct: 282  AAEYLKNLAMTGLNAKMH---ITSQQHAQ-YLERLHNELAIINKLGFNDYFLIVWDIVNF 337

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+N+I +G GRGS AGS+ A++L ITDIDP++F LLFERFLN +R+ MPD DID+  +R
Sbjct: 338  AKQNHIQLGVGRGSAAGSLVAFSLGITDIDPVKFGLLFERFLNAERVQMPDIDIDWPDNR 397

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAH 485
            R++V+ Y+  KYG    AQIITFG+L AK ALRD  R   +  + + R+   +P      
Sbjct: 398  REDVLAYLHQKYGQRNFAQIITFGTLAAKQALRDTARVFGVSQTMMSRISNAVPQGKQGR 457

Query: 486  PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             V++ +A+ D            + D LL+ +QK+EGL R+ STHAAG+V+ D PL   +P
Sbjct: 458  RVTIGEALKDSDALSRVLGDIDNGDLLLKTAQKIEGLPRNYSTHAAGVVLSDSPLVNTLP 517

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPF 603
            +     S   +TQF    +E  GL+K D LGL  LT+L ++L +  Q    + D+  +P 
Sbjct: 518  VQSGSES-RLLTQFEKNPVEALGLLKIDILGLSNLTILAQTLYYAKQYLPDRFDIGHVPL 576

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  T  L     T G+FQ ESSG++  L+ +QP   E I+A+ +LYRPGP  NI  +  
Sbjct: 577  DDKATLALYAKGDTNGVFQFESSGIKHVLKQLQPATFEHIVAVNALYRPGPSRNIESFIK 636

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++G+E +  + P +  +L  T G+I+YQEQVM +A+  +G++L EADVLR AM KK   
Sbjct: 637  RRHGQETVTVLDPSLKTILAPTFGIIVYQEQVMLVAEKYAGFTLGEADVLRSAMSKKKLA 696

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M     +FISGA   G  ++ A  IF  + +FA+YGFN+SHA AY+ +S+Q A+MK HY
Sbjct: 697  QMADMHGKFISGAVSQGHDQSQAEQIFAYIDEFANYGFNRSHAVAYSKLSFQLAYMKVHY 756

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P+ F  A +   + + +KI+ +  +A+   I +  P+VN     + +  + +   L +IK
Sbjct: 757  PIAFFTALLNANLGSPDKIRLYVTEAKARGIVVKAPNVNQSDRFWTINKDFLQMGLHSIK 816

Query: 844  GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GV T     +++    + PF+S++    R+  K   R VL  +V+AGALD FGY+R++L+
Sbjct: 817  GVRTDFVAALIDERKNNGPFESIQSLVRRLPEKFRKRDVLTQMVYAGALDSFGYNRVELV 876

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             +LD++ + A              F         +  ++K +    + +  +E+  +G  
Sbjct: 877  TALDDLIEAAS-------------FGE---LILSETKIKKMADITLTEKLVHEKETIGVN 920

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             SGHPLD +  I+++   +   +   ++    +++  M+ S +Q +T+KG  + +VT S+
Sbjct: 921  LSGHPLDTFASIIKQNDFQQIADV--SLAKEPVKMIVMIDSVRQTRTKKGETMAFVTVSD 978

Query: 1023 PAKEYEANFF 1032
                     F
Sbjct: 979  TTGTISLTIF 988


>gi|218290516|ref|ZP_03494625.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            LAA1]
 gi|218239419|gb|EED06615.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            LAA1]
          Length = 1039

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/1033 (30%), Positives = 502/1033 (48%), Gaps = 52/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  HS YS L+GA S+  ++ + AA   PA+A+TD N +    EF + A   G++PI
Sbjct: 2    FVHLHCHSPYSFLDGASSIETLVAQAAAQGMPALALTDRNTIAGQPEFHRLAALYGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L ++                    +V+L   A+G++ L EL++RM++  + +   R
Sbjct: 62   AGAELTLEDGS----------------QLVVLAEHAKGFRHLCELLTRMHVDARDRADPR 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +  + L E   EGL++L+GG  G + RA    +   A + +  ++ +FGDR Y+      
Sbjct: 106  LREADLFE-RNEGLLILSGGLRGFVQRALARRAYGDARRFVERYRDVFGDRFYLEWTADG 164

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRV 248
                 R  + ++ LA    +P VA       S E+   HDVL  +     +         
Sbjct: 165  LPGCARRMRDLLDLAEATGVPAVAATEVRAASPEEVAVHDVLTCIRVGCDLQTPHPERPF 224

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                YL + +E +  F+  P A+  TVEIA RCS +     P+ P + +           
Sbjct: 225  NRLGYLHDEAEAMRRFAQDPRAMARTVEIAERCSPVFPAEGPLFPEYRDASGRGGV---- 280

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L      G   R        G  + + R RL+ EL +I  + ++ YFL+V D +++A+
Sbjct: 281  EFLEQLVWRGARERY-------GKVSPELRIRLEHELAIIRDLGYADYFLVVWDIVRYAR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I    GRGS A SV AY L +TD+D L  +LLFERFL+ +R   PD DIDF  DRRD
Sbjct: 334  SRGIRCA-GRGSAADSVVAYCLYLTDVDALNRNLLFERFLSRERAERPDIDIDFASDRRD 392

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV  +YG +RVA++ T+ + +A++A+R+VGR   +P   +D+L K IP        
Sbjct: 393  EVIDYVYRRYGRDRVARVATYQTFRARSAVREVGRVFGIPEELLDQLAKRIPWSTHADEI 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+      R+ +    +   +L +S+++ G  RH  TH  GIVI   PL ++  +   
Sbjct: 453  EEALERVPELRDFQPYRRAFQWMLAVSRQIAGFPRHFGTHTGGIVISGEPLMKVTSLQPS 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
              S   +T ++ + +E  GL+K D L L+T+  ++ +L     R V  D   IP DD  T
Sbjct: 513  A-SGWLITPYDKRLLEDVGLVKLDLLSLRTMAAVEGALRLGTARAV--DYDHIPMDDEAT 569

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKN 666
            +  +    T+G+FQLES   R     +  + +ED++A V+L RPGPI   +   +  R+ 
Sbjct: 570  FASIRRGDTIGVFQLESPAQRALQVRLGAESLEDLVASVALIRPGPIQGNMVDPFLARRR 629

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEM 725
            G E +  +HP ++P+L +T GV+++QEQV++IA  ++G++  EAD LRR M   + + EM
Sbjct: 630  GLEPVSYLHPKLEPILGKTYGVVLFQEQVIEIATAIAGFTPGEADELRRVMSHARSRAEM 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++  ERF+  A   G+    A  +F  +  +A YGF ++HAAA+A  +Y+TA++  H+P 
Sbjct: 690  EQIGERFVQKAVHQGVPLETAQTLFSYVRGYASYGFCEAHAAAFATTAYKTAYLIEHHPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F AA +             C +AR+  ++I+P  +N    D  V   + I      I+ 
Sbjct: 750  SFFAAVLNQLPMGYYPAHVICAEARRRGVRILPVDINESEWDAGVPEPDAIRLGFRLIRS 809

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CFGYSRMQLL 902
                 AR ++E   A  PF  L D  +RV     +    E L+ AGA D      R +LL
Sbjct: 810  FSERVARALVEERQASGPFRCLSDAVTRVPQA--DALHFERLIRAGAFDRVESRDRRELL 867

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEK-FSVENSSVRFENEQRVL 959
              L  +       EK        +F          D I L +     + + R  +E  VL
Sbjct: 868  WQLPRLL--VLRKEKALA-----LFDTISAPSPAEDAIRLPQSMPPMSLAERIADEYSVL 920

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G   SGH L +Y+  LR  G     E      G  +++A + +   +  T+ G  + + T
Sbjct: 921  GVGVSGHWLSLYREALRSEGYCTLAEVGEKREGARVKVAGLSIRPHRPPTKSGKTVVFFT 980

Query: 1020 FSEPAKEYEANFF 1032
              +     +A  F
Sbjct: 981  LEDETGIADAVMF 993


>gi|257877689|ref|ZP_05657342.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC20]
 gi|257811855|gb|EEV40675.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC20]
          Length = 1103

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/1032 (29%), Positives = 522/1032 (50%), Gaps = 62/1032 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+YSLL+  + + + +++        + +TD N L+ A+EF Q+  A GI+PI
Sbjct: 2    YSQLTTLSAYSLLQSTIKIPHYIEQAKKMGYQTLGLTDHNVLYGAVEFYQQCLAQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G   D    +                 + +     +GYQ L+ L S   + +Q   +  
Sbjct: 62   FGALFDCTFGEG-----------SMSFPLYVFAKNLKGYQTLMRLSSEKMITEQLNLAAC 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
              L  L      GL+       G        +  +  ++ L      F  + L++ +   
Sbjct: 111  DSLQDL-----FGLL-----PEGEGFLPSQHDDLEANQEALRAISHKFDSESLFLGITS- 159

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            +G D     + +       +   A      L++E+  A  V+M +   + +    + +  
Sbjct: 160  KGLD----PETIAWFNEQNIAPCAYQPIAALAQEEAFAVKVMMHIKEGSQIEDFRQAKEQ 215

Query: 250  P--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 +L+   ++ + F +  +AL N   IA  C+  L +H  +LP +        ++  
Sbjct: 216  GAAQLFLQPADQLTAAFEEWSQALMNNQRIAAECAVELPLHQRLLPHYPLP----AEESA 271

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR      L  R+A    A       Y QRLD+EL+VI +M F  YFLI+ D + +A
Sbjct: 272  ADYLRKICFERLPQRVAHVTSA-------YEQRLDYELSVIHKMGFDDYFLIIWDVMDFA 324

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I  G GRGS AG++ AY L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +RR
Sbjct: 325  HQQEIVTGAGRGSAAGALVAYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNRR 384

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+++YV+ KYG E +AQI TFG++ AK  LRDV R   +  S+ +R  K IPN     +
Sbjct: 385  DEILQYVRQKYGQEYMAQIATFGTMAAKMVLRDVSRVFGLSQSEANRWSKAIPNALKMTL 444

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             L A    ++ RE    +     + ++++ LEGL RH STHAAG+VI D+ L  LVP+  
Sbjct: 445  DL-AYEQSNQLRELVSFNERNHVMFQVAKILEGLPRHVSTHAAGVVISDKNLLDLVPLQ- 502

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
            +    + +TQF M  +E  GL+K DFLGL+ L+++  +L  + +     V    IP DD 
Sbjct: 503  EGSDGIWLTQFTMNDVEAIGLLKMDFLGLRNLSIIDNTLKGIKRISQQIVTQKEIPLDDP 562

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T GIFQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  RK 
Sbjct: 563  ATLRLFQKGETAGIFQFESAGIRNVLRKLGPESIEDIAAVNALYRPGPMQNIDTFIKRKK 622

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E++      + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +D
Sbjct: 623  GQERVSYPDDSLIPILQNTYGIIVYQEQIMQVASKMAGFSLGQADILRRAISKKKKDVLD 682

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +++  F+ GA  N   +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP  
Sbjct: 683  EERRHFVQGALANQYDEKTANLVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPAP 742

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGV 845
            F A+ +    +   K+K++  +A ++ ++++PPS+N     F++  + +I +  ++IKG+
Sbjct: 743  FFASILHSVRNTASKMKEYLNEAARYGVEVLPPSINASGFSFQLQNEKQIRFGFSSIKGI 802

Query: 846  GTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLN---RRVLESLVFAGALDCFGYSRMQL 901
                 + I+        F S++ F  R++ +         L  L+  G  D    +R Q 
Sbjct: 803  RRDMIQDILAERKQHGNFTSMDQFLLRLNQRNSKWLKLDYLLPLLSIGVFDVIAPNRKQA 862

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L  L+   +   +     +    ++           +  E  +      +   E+  LG 
Sbjct: 863  LIQLEGKIQNITY-----SGGSLDLLETMA------LKEEAVADYKLEEKLALEEEYLGV 911

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y SGHP++ ++ + +   I    + V       +R+   V   ++ +T+KG ++ +V  +
Sbjct: 912  YLSGHPVEQFQKLHQLKQITDIADLVP---NERVRILLYVRKIREIRTKKGEQMAFVEGT 968

Query: 1022 EPAKEYEANFFP 1033
            + +KE     FP
Sbjct: 969  DASKEVSVTIFP 980


>gi|254181921|ref|ZP_04888518.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1655]
 gi|184212459|gb|EDU09502.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1655]
          Length = 1072

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/1050 (26%), Positives = 444/1050 (42%), Gaps = 69/1050 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             R+    L         +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 124  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLVQ 183

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D     QV        + +VA  +            D + A+     +++     
Sbjct: 184  LQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHAL 243

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 244  APNGEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----HT 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D +++
Sbjct: 298  PTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVKY 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A SV  Y + +T+++P + +LLFERFL+ +R   PD D+DF   R
Sbjct: 352  ARSKDI-LCQGRGSAANSVVCYCIGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQR 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 411  REEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L   A      E     P +    EI+ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 471  DLLARFASVGLDPEV----PLIRTWAEIAARLLNFPRHLSQHSGGFVVSCGKLTRLVPVE 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 527  NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 586

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 587  HIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 646

Query: 659  -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
               Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 647  VHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 706

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM   K K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A 
Sbjct: 707  LRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAK 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 767  LAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASLE 826

Query: 831  ---------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                     G   +   L+ ++G+G   AR I  A A  PF S+++   R   ++  R +
Sbjct: 827  AQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRACLER--RDL 884

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
                         G  R  L Q++    +    V                    D+    
Sbjct: 885  EALAAANAFATLAGNRRDALWQAVAAAPERGLLVAA----------------PIDEAVRP 928

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                   +     + R +G   + HP+ + +P L    +           G   R   +V
Sbjct: 929  ALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGLV 988

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             ++Q   T KG  + +VT  +         
Sbjct: 989  TARQMPGTAKG--VLFVTLEDETGCVNVIV 1016


>gi|83312099|ref|YP_422363.1| DNA polymerase III, alpha subunit [Magnetospirillum magneticum AMB-1]
 gi|82946940|dbj|BAE51804.1| DNA polymerase III, alpha subunit [Magnetospirillum magneticum AMB-1]
          Length = 1022

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/1032 (26%), Positives = 444/1032 (43%), Gaps = 78/1032 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQ  S+Y+ LEGA   + +    +A    AIAI D N L   +     A AAGI+ 
Sbjct: 3    PYAELQTLSNYTFLEGASHADELAITASALGLEAIAICDRNTLSGIVRAHVAAKAAGIRL 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G                 +       S++   +    Y RL  L++        K   
Sbjct: 63   VVGA----------------RLDLTDGASLLCFPTDRAAYGRLSRLLTLGRRR-APKGEC 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +  + + E     +++L          A           +L  ++ + GDRLY+   R 
Sbjct: 106  HLARADVAEHAEGQILVLIAPDPLEEGFA----------AQLAEWRTVVGDRLYLAATRR 155

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
             RG D  R   +        +PLVATN+ L+ +       DVL  +   T ++       
Sbjct: 156  FRGDDGERLRVLAGF----GIPLVATNDVLYHTPARRPLADVLTCIRQGTTLAAAGWALS 211

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + +LK+ +EM  +F+  PEAL N +E+ RRC F L   A   P  +    D      
Sbjct: 212  AHGERHLKSPAEMARLFAACPEALANGLEVVRRCRFSLDELAYEYPNEVAAGMD-----P 266

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L      G   R  +G   K       + +L  EL +I ++ F+ YFL V   + +A
Sbjct: 267  QERLEILTRQGAARRYPRGVPPK------VQAQLAHELALIRQLGFAPYFLTVHAIVAFA 320

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A S   Y L +T +DP +  LLFERF++ +R   PD D+DF  +RR
Sbjct: 321  ESRGI-LCQGRGSAANSAVCYCLRVTPVDPAQMDLLFERFISAERGEPPDIDVDFEHERR 379

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+++ + YG  R     T    + ++A+RDVG+ + +    V+ L K         +
Sbjct: 380  EEVIQHIYDTYGRHRAGLTATVIHYRTRSAIRDVGKVMGLSEDTVEALAKANSGWGRRGI 439

Query: 488  SLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                   D   RE  L   +P + R L ++++L G  RH S H  G VI    L +LVP+
Sbjct: 440  K------DEHVRELGLDPTEPGLARTLSLAEELTGFPRHLSQHVGGFVISKGRLDELVPI 493

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604
                  D  V Q++   ++  GL+K D L L  L+ ++K+ D L    G  + L+ +P +
Sbjct: 494  ENAGMEDRTVIQWDKDDLDALGLMKVDVLALGMLSCIRKAFDLLRLHHGRDLCLATLPRE 553

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
            D  TY +L     +G+FQ+ES      L  ++P    D++  V++ RPGPI   +   Y 
Sbjct: 554  DASTYDMLCKADAVGVFQVESRAQMSMLPRLRPRRFYDLVVEVAIVRPGPIQGGMVHPYL 613

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+ GKE +      +  +L +T GV ++QEQ M+IA + +G++ SEAD LRRAM   + 
Sbjct: 614  RRRQGKETVDYPSEELRQVLGKTLGVPLFQEQAMKIAMVAAGFTASEADGLRRAMATFRH 673

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              ++    ++ I G    G  +  A  +F+ +  F +YGF +SHAAA+A + Y +AW+K 
Sbjct: 674  TGQVGAYGDKLIGGMVARGYERDFAERVFKQIEGFGEYGFPESHAAAFAHLVYVSAWLKC 733

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP  F  A +  +        +  +DA    ++I P  VN    D  +    +   L  
Sbjct: 734  HYPAAFACALLNSQPMGFYAPAQIVRDAADHGVEIRPVDVNHSDWDCTLEGKALRLGLRQ 793

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            + G+       +  A     + S         +  L R  L+ L  A A    G  R + 
Sbjct: 794  VSGLARRDGERLAAARGAG-YASAYGLWR---TSGLERAALDRLAAADAFGSMGLGRRE- 848

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
                      A W  K        +F         K+ L   SV    V    +   L  
Sbjct: 849  ----------AAWAIKALDAPPLPLFEEAPPPPEAKVALPPASVGEEVV---GDYAALKL 895

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
                HPL V +   R +GI          +G  + ++ +V+ +Q+  +  G  + ++T  
Sbjct: 896  SLKCHPLAVLRDPFRVLGIMTNASLKD-RKGGRVAVSGLVLVRQRPGSANG--VLFITLE 952

Query: 1022 EPAKEYEANFFP 1033
            +         +P
Sbjct: 953  DETGIANIVVWP 964


>gi|326803733|ref|YP_004321551.1| DNA polymerase III, alpha subunit [Aerococcus urinae
            ACS-120-V-Col10a]
 gi|326651141|gb|AEA01324.1| DNA polymerase III, alpha subunit [Aerococcus urinae
            ACS-120-V-Col10a]
          Length = 1124

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/1034 (29%), Positives = 517/1034 (50%), Gaps = 50/1034 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L V++SY+LL+  + + + ++   A     +AI+D N ++  ++F        I P+
Sbjct: 2    FTPLNVNTSYTLLKSPMPVKDYVEAAKALDYQNLAISDVNVMYGVIDFYNYCKHYDINPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + I   D                  ++     +GY+ L+ L S +   +       
Sbjct: 62   IGMTVSIQRPDQRDQEEW-----------LIYAKNDQGYRSLMRLSSLIKSQEPIDYQAV 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                +         I +   ++GP          + A   L   +++F    LY+ +   
Sbjct: 111  RDFIF---NNHRNWITIIEANNGPHMHFLKQQREEEAAAFLDKLREIFKASDLYMGVDES 167

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRV 248
                 Y ++ +  LA   ++PL+A +   +LS+ D    DVL A+  +  +   +++   
Sbjct: 168  YL---YHQAALEDLAKESQIPLIAQSKLAYLSKNDVFTQDVLAAIEVNQPLDNYREKAGA 224

Query: 249  TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +L++ +     + +  L +A +   E        +Q    +LP++  +      + 
Sbjct: 225  EGQFFLRSLASYQESYQNKGLAKAFDQVSEAFDGVHLDIQFDQALLPKYPIESG----QS 280

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L++ A  GL  R+           Q YR+RLD+EL++I +M F+ YFLIV D + +
Sbjct: 281  SKEFLKDLAYQGLSKRVGN--------EQSYRERLDYELSIIDQMGFNDYFLIVWDVMDY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K +I  GPGRGS AGS+ AY L ITD+DP+R  LLFERFLNP+R SMPD D+DF  D+
Sbjct: 333  AHKKHIMTGPGRGSAAGSLVAYCLFITDVDPIRNHLLFERFLNPERQSMPDIDLDFPDDK 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R +++ YV +KYG + VAQI TFG+  A+ A+RDVG A     + + R    I +   + 
Sbjct: 393  RQDILNYVYHKYGSDHVAQISTFGTFAARKAIRDVGNAFNKSQATMSRWANTISSQ--NQ 450

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               +A    S+ ++    +       + ++K+EGL RH STHAAG+++ D+ L+  +P+ 
Sbjct: 451  TLEEAYQSSSQLQQYIAEEEDGQLWFQTAKKIEGLPRHVSTHAAGVILSDQDLTDFIPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL----QKSLDFLAQRGVKVDLSLIP 602
              +   +  +Q+ M  IE+ GL+K DFL L  LT+L    + +      R   +D    P
Sbjct: 511  AALNHSIHQSQYTMHEIERIGLLKIDFLSLSNLTILANSVRAAEKISKSRLRPIDF---P 567

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D   Y + +   TLG+FQ ES+G+R+ L  ++P  + D+ A+ +LYRPGP+  I  + 
Sbjct: 568  RNDQSVYRVFSQANTLGVFQFESNGIRRVLRRVKPSSMADLAAVNALYRPGPMQQINHFV 627

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            NRK+GKE I   HP ++ +LKET G+I+YQEQVMQ+AQ ++G+SL EAD+LRR + KK K
Sbjct: 628  NRKHGKEPITYPHPDLEGILKETYGIIVYQEQVMQVAQKIAGFSLGEADILRRTISKKDK 687

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              MD+ + +FI  A   G S+++A  I+  +  FADYGFNKSHA AY+ ++Y+ AW+K H
Sbjct: 688  ATMDRLQAKFIRQAVAKGYSQSVAPKIYSYIEAFADYGFNKSHAYAYSYLAYEMAWLKVH 747

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAA 841
            YP  F   ++        K ++   +A    +++  P VN      + V D  I   LA 
Sbjct: 748  YPAAFYYGNLLQHKIYETKGQQLTYEASLCQVKLQLPDVNRSYTTMQVVDDQHILLGLAD 807

Query: 842  IKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            I+G+       I++   +   + SL DF  R+         LE L  AGALD FGY+R  
Sbjct: 808  IRGLMRNFTTAIVQERLNGGQYRSLGDFIQRLPKNYSKADNLEKLALAGALDSFGYNRRT 867

Query: 901  LL-QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            L+ ++L  + +          N+  ++F +++        ++  +  +  +  E EQ  L
Sbjct: 868  LIEEALPKLLEAVNLFG-GSNNQQLSLF-NQENRELYAPEIKHLNEYDDRLLLEGEQETL 925

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G   S      Y+P  +   I+   +       + + +   +V  ++ +T+K   + ++T
Sbjct: 926  GQSISVELYSDYRPYYQNGQIQPINKLS---DKSQVTIIGEIVKVKRIQTKKNQPMAFLT 982

Query: 1020 FSEPAKEYEANFFP 1033
              +   E E   FP
Sbjct: 983  LRDEHSEVEVIAFP 996


>gi|327539745|gb|EGF26350.1| error-prone DNA polymerase [Rhodopirellula baltica WH47]
          Length = 1056

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/1043 (25%), Positives = 470/1043 (45%), Gaps = 72/1043 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  +V L   S++S L+GA   + ++ + A      +AITD  ++   +     A   G+
Sbjct: 13   AMRYVELHCRSNFSFLDGASHPDELVQRAAELGYEGLAITDRESIAGVVRGFSPAQELGL 72

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            Q I+G ++                     P +VL  +    Y R+  ++S   +  + K 
Sbjct: 73   QYIVGTEVHPT----------------DAPPMVLWPTDRAAYGRMCRMLSTGRMRCE-KG 115

Query: 128  SVRICLSWLQEIGT---EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
               +    + E       G+I      S     A   +S Q        F+ +F DR Y+
Sbjct: 116  RCELSFEDIAEHAQGILAGVIATDESRSIEDQHAHVNDSRQFLR---GPFRDVFDDRGYL 172

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                HRG D   + + +  L+   ++PL+A  +  + S E    HD ++A++    V Q 
Sbjct: 173  LASFHRGVDDAAKATWLRNLSLATDVPLLACGDVRYHSAERMALHDCVVAISQGKSVEQI 232

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
               R+    H+L++  E+  ++ D+P+A+  T E+A+RC+F L       P  +  E   
Sbjct: 233  QSDRLVNSQHHLRSLEEIAELYRDVPDAVARTTEVAQRCTFTLDQLKYEYPVELAPEGM- 291

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                    L+     G   R   G   K        + L  E+ +I  +++  YFL V D
Sbjct: 292  ---TSIEHLKRLTWEGARGRWPNGVPEK------VIETLRHEVTLIEDLQYEAYFLTVWD 342

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+   I +  GRGS A SV  Y L IT +DP    LLFERF++ +R   PD D+DF
Sbjct: 343  LVRFARSQEI-LCQGRGSAANSVVCYCLGITAVDPTHTDLLFERFISRERGEAPDIDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EV++Y+  KYG +R          +AK+A+R+VG+AL +    +D + KL  + 
Sbjct: 402  EHQRREEVLQYLYEKYGRDRAGMTAVVTCYRAKSAIREVGKALAISPDIIDAVAKLAGSY 461

Query: 483  PAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              +P          R R+A L    P   R L +++ L G  RH S H  G+V+    L 
Sbjct: 462  SRNP------ELPERCRDAGLDPDTPLGRRFLYLTETLIGFPRHLSQHVGGMVMTAGSLC 515

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLS 599
            +L            V Q+N   ++  G++K D L L  L+ +++  + +     +   LS
Sbjct: 516  ELCVTENAAMPGRSVIQWNKDDLDDIGILKVDILALGMLSAIRRCFELVKDHHNRELSLS 575

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--N 657
             IP DD  TY ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI    
Sbjct: 576  TIPPDDTPTYDMICAADTMGVFQIESRAQMSMLPRLKPRCYYDLVIEVAIVRPGPIQGNM 635

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +  +   +         +  I  +L++T GV I+QEQ M++A + +G++  EAD LRRAM
Sbjct: 636  VHPFLAARENPAAAKYPNDAIRKVLEKTLGVPIFQEQAMKLAVVAAGFTPGEADQLRRAM 695

Query: 718  GK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
               +    +D+ + + + G   NG++   A N+F  +  F +YGF +SHAA++A++ Y +
Sbjct: 696  AAWRRPGVIDRFRTKLLEGMKANGLNGEFAENVFRQIRGFGEYGFPESHAASFALLVYAS 755

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV------DFKV 830
             ++K HYP  F AA +  +        +  +DA+Q  +Q++P  +N   +      D   
Sbjct: 756  CYLKRHYPTAFCAALLDSQPMGFYAPAQLIRDAQQHGVQVLPVDINDSNIRSKLIPDLNR 815

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
               ++   L  ++G+ +  A+ I+ A  A+ PF +L D  +R    + N   + +L  A 
Sbjct: 816  PHPKLRLGLQMVRGLPSAVAQKIIVARDANGPFANLHDLTTRAKLSRSN---IATLADAD 872

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL      R   +          Q + ++ +     + A  +   S    L   S    +
Sbjct: 873  ALASIAQDRRAAVW---------QSLAQDDSGDSMPLLADLEPDCSVPEELVPMSP---A 920

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
               +N+    G     HP+  ++  L  +  K   +      G ++R+A +V+ +Q+  T
Sbjct: 921  EEVKNDYATTGLSLKAHPVSFWRDDLNALRCKRASDLPKLRDGVHVRVAGLVLMRQRPGT 980

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
             KG  I +VT  +         F
Sbjct: 981  AKG--ITFVTMEDETGSMNLVLF 1001


>gi|152980588|ref|YP_001353603.1| DNA polymerase III alpha subunit [Janthinobacterium sp. Marseille]
 gi|151280665|gb|ABR89075.1| DNA polymerase III alpha subunit [Janthinobacterium sp. Marseille]
          Length = 1041

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/1038 (26%), Positives = 460/1038 (44%), Gaps = 69/1038 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PS+  L   S++S L GA     ++++       ++AITD  +L   +    +A    + 
Sbjct: 6    PSYAELHCRSNFSFLHGASHPEELVERACDLGYSSLAITDECSLAGVVRAHVEAKKRQLH 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG ++ +                     ++ L     GY  L EL++        K S
Sbjct: 66   LIIGSEIKLACGSK----------------LLFLACNRNGYGNLSELITLARRR-AAKGS 108

Query: 129  VRICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              +  S L        L  L    +  I       S+     +    ++ F  R ++ ++
Sbjct: 109  YTLYRSDLDAHAAIAHLRHLPDCLT--ILLPQRGCSAVELAGQAAWLQQNFAGRAWIAVE 166

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
              H   D +  +Q+ ++A    LPLVA  + L          D L AV     +++    
Sbjct: 167  LLHWSGDEHWLAQLKEIAAQQALPLVAMGDVLMHVRSRKPLQDTLTAVRLGKSIAECGLD 226

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             +   + +L++R  +  I+      L+ ++EIA  C+F L+      P  I    + +  
Sbjct: 227  LQPNAEQHLRSRLRLSQIYP--AALLKESLEIAALCTFSLEELRYQYPEEIVPAGETMSA 284

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 LR     G   R  +  I      +++  R++ EL++I  + +  YFL V D ++
Sbjct: 285  ----YLRRLVYEGATQRRYKNGI-----PEEFHVRIEHELSLIQELHYEPYFLTVYDIVK 335

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S+  Y L IT++DP R S+LFERF++ +R   PD D+DF   
Sbjct: 336  FARSEGI-LCQGRGSAANSIVCYCLGITEVDPARSSVLFERFISRERNEPPDIDVDFEHQ 394

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV++Y+  KYG  R A      + + ++A++DVG+AL + + Q++RL +        
Sbjct: 395  RREEVMQYIYQKYGRHRAALTAALITYRPRSAMKDVGKALGLDFEQINRLSQSHKWWDGK 454

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +    + ++    E+    P V +L+E++Q L G  RH S H  G VI    L++LVP+
Sbjct: 455  QIGADRLQENGFDPES----PIVQKLVELTQTLIGFPRHLSQHTGGFVISQDSLARLVPI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604
                  D  V +++   ++  GL+K D L L  L+ ++++L+ ++ +RG   +L  I  D
Sbjct: 511  ENASMKDRSVIEWDKDDLDALGLLKVDVLALGMLSAIRRALEMISLRRGHDFELQDIHDD 570

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY--- 661
            D  TY ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI   +V+   
Sbjct: 571  DAATYEMICAADTIGVFQIESRAQMSMLPRLRPKCYYDLVIQVAIVRPGPIQGGMVHPYL 630

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
             NR+  K+ I+     I+  L  T GV I+QEQVMQIA L +GY+  EAD LRR+M   K
Sbjct: 631  KNRRMNKDDIIYPGDEIEEALSRTCGVPIFQEQVMQIAVLAAGYTAGEADDLRRSMAAWK 690

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K  ++K + +  +G   NG     A  +FE +  F +YGF +SHAA++A++ Y +AW+K
Sbjct: 691  RKGNLEKHEIKLKTGLINNGYDPGFADRLFEQIKGFGEYGFPESHAASFALLVYVSAWIK 750

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV-----DFKVGDNRI 835
             H P  FLAA +  +        +  QDA++  + + P  +          D       +
Sbjct: 751  RHEPAAFLAALLNSQPMGFYSASQLVQDAKRHGVPVRPVDIMLSETESTMEDMHAQYPAV 810

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  +KG+ T  A  I++A   +PF S +D   R    +     L             
Sbjct: 811  RLGLHMVKGLSTDAAERIIDARLRRPFASTDDLARRAVLDQHELGALARANAL---LALT 867

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R Q           A+W           +   +       + L   S     +    +
Sbjct: 868  GHRRQ-----------AKWEVAAMLPPPALL--RDAPIIEAPVILPPASEGQEII---AD 911

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     HPL + +P L++M +    E          R   +V  +Q+  T KG+  
Sbjct: 912  YASTGLTLQRHPLALLRPRLKQMNLSTALEMKGFADRKLARTTGIVTMRQRPPTAKGTM- 970

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +VT  +         +P
Sbjct: 971  -FVTLEDETGITNVIIWP 987


>gi|94971073|ref|YP_593121.1| DNA polymerase III, alpha subunit [Candidatus Koribacter versatilis
            Ellin345]
 gi|94553123|gb|ABF43047.1| error-prone DNA polymerase, DnaE-like protein [Candidatus Koribacter
            versatilis Ellin345]
          Length = 1070

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/1046 (26%), Positives = 504/1046 (48%), Gaps = 49/1046 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     ++ L  +S++S L GA     ++ +    + PA+A+ D N ++ +  F   A  
Sbjct: 1    MTAQNQYIELHANSAFSFLRGASLPETLIFRAQQLEYPAMALMDGNGVYGSARFHLAAKP 60

Query: 65   AGIQPIIGCQL-DIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLL 122
             G++  +G ++   D+ + +         +P  P  + LL  + EGYQ L  +V+R+ + 
Sbjct: 61   NGVRAHVGSEIAVRDLGERMAPAAWLPHQWPAEPVRLPLLCESREGYQNLCRMVTRLKMR 120

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDR 181
            +  K      ++ ++E    GL+ LTGG  GP+  A          K +    ++F  + 
Sbjct: 121  EPSKAEGAAVMADVEEFAR-GLVCLTGGDEGPLASALARGGEPEGHKTVEHLVRMFGREN 179

Query: 182  LYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            ++V LQRH   ++ +R    V++A + +LP++ATN   +  E + E  D+  A+ H   +
Sbjct: 180  VFVELQRHGLREQEWRNQAAVRIARSLQLPILATNGVRYADEPEREIADLFTAIRHHVAL 239

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                R        YL+  +EM  +F DLPEA+ NT E+++R +F L       P +   +
Sbjct: 240  KDAGRLLAQNSCRYLRPTAEMARLFRDLPEAVANTWELSQRLTFELDDLGYQFPIYPTPD 299

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             + +    ++ L  +   G+  R         Y     ++++  EL +I ++  +GYFLI
Sbjct: 300  GESM----DSFLEKRVQEGVIKRYGAKNEPDLYARA--QKQVARELALIKKLGLAGYFLI 353

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D I++ ++N+I V  GRGS A S   YAL IT +DP+   LLFERFL+  R   PD D
Sbjct: 354  VWDIIRFCQQNDILV-QGRGSAANSAVCYALEITAVDPVGMELLFERFLSEARGEWPDID 412

Query: 420  IDFC-QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            +D    D+R++ I+YV  +YGH   A      + + K+A R+VG+AL      +++L KL
Sbjct: 413  LDLPSGDKREQAIQYVYTRYGHLGAAMTANVITYRGKSAAREVGKALGFDVETLNKLTKL 472

Query: 479  I--PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +          +L+   + + F       P + + L++  +++ L RH   H+ G+VI  
Sbjct: 473  VSTWEWRGPNDTLENQFESAGFEA---KHPHIAKYLDLCSRIQDLPRHLGQHSGGMVICQ 529

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK 595
              L  +VP+         V Q++        +IK D LGL  + +++  +D +    GV 
Sbjct: 530  GQLDSVVPIEPASMPGRSVVQWDKDDCADMHIIKVDLLGLGMMAVIKDCVDLVPRHYGVP 589

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VDL+ +P +D + Y  L    T+G+FQ+ES     +L    P    DI+  V++ RPGPI
Sbjct: 590  VDLAQLPQNDGDVYRTLQKADTVGMFQVESRAQMASLPRNYPTRFYDIVVQVAIIRPGPI 649

Query: 656  DNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               +   Y  R+  KE++   HPL++P+LK T GV ++QEQ++++A +++ +S +EA+ L
Sbjct: 650  VGNMANPYMRRRQKKEEVTYYHPLLEPVLKRTLGVPLFQEQLLRMAMIVANFSGTEAEEL 709

Query: 714  RRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRA+  ++  + M +   +  +G ++NG        I + ++ FA YGF +SHAA++A+I
Sbjct: 710  RRALGMRRSTQRMRELGVKLRAGMTENGFDPKTQEEIIQSISSFALYGFPESHAASFALI 769

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +Y +A+ K HY   F AA +  +           +DA++  ++++P  V     D  V  
Sbjct: 770  AYASAYFKVHYLAAFTAAILNNQPMGFYSPAVLVKDAQRHGLRVLPVDVQRSVWDCTVEH 829

Query: 833  N----RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                 ++   L  ++G+   TA  ++++  +  PF S ED   RV    LNR+ L +L  
Sbjct: 830  AGDERKLRLGLRYVRGLRQETAEILVKSRENHGPFASSEDLGRRVPL--LNRKELVALAQ 887

Query: 888  AGALDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
             GAL+  G    R   L  ++ + +                      +  ++  +   + 
Sbjct: 888  IGALNWVGGTAHRRDALWQVERVSRRP---------------GPLLQSAEEEEDVSPLAQ 932

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             N   R   +    G     HP+  ++  L KM +   E+      G  +R+A  V+++Q
Sbjct: 933  MNWEERLVADFNGTGLTVGKHPMTYHRERLAKMRVLSAEQLQVAEDGRQVRIAGCVIARQ 992

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +  T KG    +++  +      A  
Sbjct: 993  RPGTAKG--FVFLSIEDETGIANAII 1016


>gi|325571261|ref|ZP_08146761.1| DNA-directed DNA polymerase III alpha subunit [Enterococcus
            casseliflavus ATCC 12755]
 gi|325155737|gb|EGC67933.1| DNA-directed DNA polymerase III alpha subunit [Enterococcus
            casseliflavus ATCC 12755]
          Length = 1103

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/1032 (30%), Positives = 527/1032 (51%), Gaps = 62/1032 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+YSLL+  + + + +++        + +TD N L+ A+EF Q+  A GI+PI
Sbjct: 2    YSQLTTLSAYSLLQSTIKIPHYIEQAKKMGYQTLGLTDHNVLYGAVEFYQQCLAQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G   D           +G   FP    + +     +GYQ L+ L S   + +Q   +  
Sbjct: 62   FGALFDCTFG-------EGSMSFP----LYVFAKNLKGYQTLMRLSSEKMITEQLNLAAC 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
              L  L      GL+       G        +  +  ++ L      F  + L++ +   
Sbjct: 111  DSLQDL-----FGLL-----PEGEGFLPSQHDDLEANQEALRAISHKFDSESLFLGITS- 159

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--R 247
            +G D     + +       +   A      L++E+  A  V+  +   + +    +   +
Sbjct: 160  KGLD----PETIAWFNEQNIAPCAYQPIAALAQEEAFAVKVMTHIKDGSQIEDFRQAKEQ 215

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   +L+   ++ + F +  +AL N   IA  C+  L +H  +LP +   +    ++  
Sbjct: 216  ATTQLFLQPADQLTASFGEASQALMNNQRIAAECAVELPLHQRLLPHYPLAQ----EESA 271

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR      L  R+A    A       Y QRLD+EL+VI +M F  YFLI+ D + +A
Sbjct: 272  ADYLRKICFERLPQRVAHVTSA-------YEQRLDYELSVIHKMGFDDYFLIIWDVMDFA 324

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I  G GRGS AG++ AY L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +RR
Sbjct: 325  HQQEIVTGAGRGSAAGALVAYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNRR 384

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+++YV+ KYG E +AQI TFG++ AK  LRDV R   +  S+ +R  K IPN     +
Sbjct: 385  DEILQYVRQKYGQEYMAQIATFGTMAAKMVLRDVSRVFGLSQSEANRWSKAIPNALKMTL 444

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             L A    ++ RE    +     + ++++ LEGL RH STHAAG+VI D+ L  LVP+  
Sbjct: 445  DL-AYEQSNQLRELVSFNERNQVMFQVAKILEGLPRHVSTHAAGVVISDKNLLDLVPLQ- 502

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
            +    + +TQF M  +E  GL+K DFLGL+ L+++  +L  + +     V    IP DD 
Sbjct: 503  EGSDGIWLTQFTMNDVEAIGLLKMDFLGLRNLSIIDNTLKGIKRISQQIVTQKEIPLDDP 562

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T GIFQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  RK 
Sbjct: 563  ATLRLFQKGETAGIFQFESAGIRNVLRKLGPESIEDIAAVNALYRPGPMQNIDTFIKRKK 622

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E++      + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +D
Sbjct: 623  GQERVSYPDDSLIPILQNTYGIIVYQEQIMQVASKMAGFSLGQADILRRAISKKKKDVLD 682

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +++  F+ GA  N   +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP  
Sbjct: 683  EERRHFVQGALANHYDEKTANLVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPAP 742

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGV 845
            F A+ +    +   K+K++  +A ++ ++++PPS+N     F++  + +I +  ++IKG+
Sbjct: 743  FFASILHSVRNTASKMKEYLNEAARYGVEVLPPSINASGFSFQLQNEKQIRFGFSSIKGI 802

Query: 846  GTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLN---RRVLESLVFAGALDCFGYSRMQL 901
                 + I+    +   F S++ F  R++ +         L  L+  G  D    +R Q 
Sbjct: 803  RRDMIQDILAERKEHGNFTSMDQFLLRLNQRNSKWLKLDYLLPLLSIGVFDGIAPNRKQA 862

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L  L+   +   +     +    ++           +  E  +      +   E+  LG 
Sbjct: 863  LIQLEGKIQNITY-----SGGSLDLLETMA------LKEEAVADYKLEEKLALEEEYLGV 911

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y SGHP++ ++ + +   I    + V       +R+   V   ++ +T+KG ++ +V  +
Sbjct: 912  YLSGHPVEQFQKLHQLKQITDIADLVP---NERVRILLYVRKIREIRTKKGEQMAFVEGT 968

Query: 1022 EPAKEYEANFFP 1033
            + +KE     FP
Sbjct: 969  DASKEVSVTIFP 980


>gi|319787762|ref|YP_004147237.1| DNA polymerase III subunit alpha [Pseudoxanthomonas suwonensis 11-1]
 gi|317466274|gb|ADV28006.1| DNA polymerase III, alpha subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 1095

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1051 (26%), Positives = 470/1051 (44%), Gaps = 87/1051 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S  ++  + A     A+AITD  +L   +   + + A G++
Sbjct: 52   PAYAELHCLSEFSFLRGASSAEDLFARAAQCGYEALAITDECSLAGIVRAWEASRATGVK 111

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G +  +D                     VLLV +  GY RL ELV+     +  K S
Sbjct: 112  LVVGSEFALDCG----------------LRCVLLVQSRLGYTRLCELVTTGR-RNSAKGS 154

Query: 129  VRICLSWLQEI------GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             R+  + ++ +      G EG +  TG   G              E R L    +FGD  
Sbjct: 155  YRLSRADVERVVRAPPPGEEGGMAGTGEDCGLFALWLPGAEPDPVEGRWLRL--VFGDDA 212

Query: 183  YVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ ++ HR  D   R +Q+ +LA   ++  VA  +            D L A+ H+  ++
Sbjct: 213  YLAVELHREQDDAARLAQLQELAARLQMTAVAAGDVHMDVRRRRVLQDTLTAIRHNLTIA 272

Query: 242  QK-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA-PILPRFIEKE 299
            +  DR     + +L+ R  + +I       L+  VE+ARRC+F L+  A  + P+ +  E
Sbjct: 273  ECADRLFRNGERHLRTRRALAAIHP--APLLQAAVELARRCNFDLRKEARYVYPKELVPE 330

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                     + LR     G+  R  +G   +         +++ EL +IA +K+  +FL 
Sbjct: 331  G----HTPSSWLRQLTEEGMRERWPEGVPPR------VAAQIEEELALIAELKYEAFFLT 380

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++A+  +I +  GRGS A S   +AL IT +DP +  LL  RFL+  R   PD D
Sbjct: 381  VEDIVRFARGKDI-LCQGRGSSANSAVCFALGITAVDPAQTRLLVSRFLSRARNEPPDID 439

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EV++YV +KYG  R A   T    + K+A+RDV +A  +P  Q+  L +  
Sbjct: 440  VDFEHERREEVLQYVYSKYGRRRAALAATVIRYRGKSAVRDVAKAFGLPPDQIGLLAECF 499

Query: 480  PNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                       A     R  EA     +P ++++L ++  LE + RH S H  G VI D 
Sbjct: 500  GWGNG------AAPMRQRLSEAGFDPDNPLINKVLALAAMLEDMPRHLSQHVGGFVISDA 553

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKV 596
            PLS +VP+     +D  + Q++   +E  G++K D L L  LT ++K+ D +   RGV++
Sbjct: 554  PLSTVVPVENAAMADRTIIQWDKDDLETMGMLKVDCLALGMLTCIRKAFDLVEGYRGVRL 613

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ +P +D  TY +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI 
Sbjct: 614  DMATLPREDAATYEMLQAADSVGVFQVESRAQMAMLPRLRPKRFYDLVVQVAIVRPGPIQ 673

Query: 657  NIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
              +   Y  R+ GKE +      +  +L  T G+ ++QEQVM++  + +GYS  EAD LR
Sbjct: 674  GGMVHPYLRRRMGKEPVTYPSEGVREILGNTLGIPLFQEQVMELV-IHAGYSPEEADHLR 732

Query: 715  RAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+M    +  +M+  + R      +   S      +FE +  F  YGF +SHAA++A + 
Sbjct: 733  RSMAAWGRGGDMEPHRLRIRQLMEEKRYSSEFIDQLFEQIKGFGSYGFPQSHAASFAKLV 792

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-----QFNIQIMPPSVNTPCVDF 828
            Y +AW+K H P  F  A +  +        +  QDAR     + ++ + P  +     D 
Sbjct: 793  YVSAWLKRHEPAAFACALINSQPMGFYSPSQIVQDARRGRGDRESVDVRPVDITCSTWDC 852

Query: 829  KVG------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
             +          I   L  + G+    A+ I++A   + F  + D C R       R+ L
Sbjct: 853  TLEPVGQGKQPAIRLGLRLVAGLSEAAAQAIVDARRWRVFSDVADLCRRARLDAKARQAL 912

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
                 AGALD     R     ++  I                 +          ++   +
Sbjct: 913  ---AEAGALDGLAGHRNAARWAVAGI------------EPKRPLLDTSPDETRIELPAPR 957

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
               E        + R  G     HP+ + +  L +  I G  E      G+ + +A +V 
Sbjct: 958  LGEE-----LLADYRSTGLSLRAHPMALLRAQLVQRRILGVRELQQRRHGSGVHVAGLVT 1012

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +Q+  T KG+   +VT  +         +P
Sbjct: 1013 QRQRPATAKGT--IFVTLEDEHGMVNVIVWP 1041


>gi|254201717|ref|ZP_04908081.1| DNA polymerase III, alpha subunit [Burkholderia mallei FMH]
 gi|147747611|gb|EDK54687.1| DNA polymerase III, alpha subunit [Burkholderia mallei FMH]
          Length = 1066

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/1050 (26%), Positives = 443/1050 (42%), Gaps = 78/1050 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 12   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 71

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 72   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 126

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             R+    L         +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 127  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLVQ 186

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D     QV        + +VA  +            D + A+     +++     
Sbjct: 187  LQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHAL 246

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 247  APNGEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----HT 300

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D +++
Sbjct: 301  PTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVKY 354

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   R
Sbjct: 355  ARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQR 413

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 414  REEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 473

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L   A      E     P +    EI+ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 474  DLLARFASVGLDPEV----PLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVE 529

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 530  NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 589

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 590  HIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 649

Query: 659  -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
               Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 650  VHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 709

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM   K K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A 
Sbjct: 710  LRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAK 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 770  LAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASLE 829

Query: 831  ---------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                     G   +   L+ ++G+G   AR I  A A  PF S+++   R       RR 
Sbjct: 830  AQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRACL---ERRD 886

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE+L  A A      +R   L                                 D+    
Sbjct: 887  LEALAAANAFATLAGNRRDALWQ------------------------AVAAAPIDEAVRP 922

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                   +     + R +G   + HP+ + +P L    +           G   R   +V
Sbjct: 923  ALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGLV 982

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             ++Q   T KG  + +VT  +         
Sbjct: 983  TARQMPGTAKG--VLFVTLEDETGCVNVIV 1010


>gi|326381920|ref|ZP_08203613.1| error-prone DNA polymerase [Gordonia neofelifaecis NRRL B-59395]
 gi|326199346|gb|EGD56527.1| error-prone DNA polymerase [Gordonia neofelifaecis NRRL B-59395]
          Length = 1096

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/1038 (27%), Positives = 472/1038 (45%), Gaps = 73/1038 (7%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +  +  L  HS+YS L+GA     ++++        +A+TD +  +  + F++ A   
Sbjct: 67   TSTVPYAELHAHSAYSFLDGASMPEAMVEEAQRLGLRGLALTDHDGFYGVVRFAEAAREF 126

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+  + G +L ++         +     P    + +L   AEGY+RL  +++  ++    
Sbjct: 127  GMPTVFGAELSLERDS-----ARAGAVDPPGEHLQVLARRAEGYRRLSRVIADAHMTGGE 181

Query: 126  KQSVRICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
            K  +R   + + E    G  ++LTG   G + RA      + A   L      F    + 
Sbjct: 182  KGLLRYDAAAITEHAAAGDWLILTGCRKGAVRRALDRGGKRAAGAALGEMIDRFGIGNVA 241

Query: 184  VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            V L    G  D  R + +  LA  H +P VAT  + F + E+      + A+   T ++ 
Sbjct: 242  VELSPGPGSDDDERNAILASLAAQHRVPTVATTGAHFAAPENGRLATAMAAIRARTDITT 301

Query: 243  KDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             D         +L+N  EM+ +     EA++N V  A  C+F L++ AP LP F   +  
Sbjct: 302  IDGWMPGVGGAHLRNGDEMLRLMPAHREAIDNAVAFADECAFSLKLIAPSLPPFDVPDG- 360

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 E   LR     G   R       +      YR ++D EL +I  + F GYFL+V 
Sbjct: 361  ---HSESTWLRELTERGARGRYG----TREQRPDAYR-QIDHELAIIEALTFPGYFLVVH 412

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + + K+N+I +  GRGS A S   YAL IT++DP+   LLFERFL+P+R   PD D+D
Sbjct: 413  DIVSFCKENDI-LCQGRGSAANSAVCYALGITNVDPVANHLLFERFLSPERDGPPDIDVD 471

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
               DRR+E I++V  K+G    AQ+    + + ++A+RD  RAL     Q D   K IP 
Sbjct: 472  IESDRREEAIQHVYAKHGRSHSAQVANVITYRGRSAVRDTARALGYAPGQQDAWSK-IP- 529

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                                   D + D + E++ ++  L RH   H+ G+VI DRP++ 
Sbjct: 530  -----------------------DSAPDDVREMAAQISSLPRHLGIHSGGMVICDRPIAD 566

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600
            + P      +   V Q++       GL+KFD LGL  L+ L   +D +   +GV VDL+ 
Sbjct: 567  VCPTEWARMAGRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYMIDLVDEHKGVTVDLAR 626

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI-- 658
            +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI     
Sbjct: 627  LDLTEEAVYDMLCRADSVGVFQVESRAQMATLPRLKPRTFYDLVVEVALIRPGPIQGGSV 686

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM- 717
              Y  R+NG E     HP ++  L  T G+ ++QEQ+MQ+A+ ++G+  +EAD LRRAM 
Sbjct: 687  HPYIRRRNGLEAPNCDHPSMEDALGRTLGIPLFQEQLMQVARDVAGFGAAEADQLRRAMG 746

Query: 718  GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             K+  E+M + ++RF  G  + NGI+  +A  I+E +A FA++GF +SH+ ++A + + +
Sbjct: 747  SKRSPEKMQRLRQRFYDGMRETNGITGDLADRIYEKMAAFANFGFPESHSQSFASLVFYS 806

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN--TPCVDFKVGDNR 834
            AW K H+P  F AA +  +       +    DAR+  +Q+  P VN        + G   
Sbjct: 807  AWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVQVHRPDVNLSLSYAGLENGGLD 866

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +   L AI+G+    A  I+E   A  PF S+ D   RV++       LE++  AGA + 
Sbjct: 867  VRIGLGAIRGLSDEVATRIVEERSAGGPFVSVADLSRRVEAT---TAQLEAIATAGAFES 923

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
             G  R            +         N   ++      +     TL   S    +    
Sbjct: 924  LGRDRR--------AALWEAGAAAGLRNDQLDV-----TSPRGAPTLPGMSEVELTTVDA 970

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
                  G     +P +  +P L  MG+   +  ++   G+ + +   V  +Q+  T  G 
Sbjct: 971  L---STGVSPRAYPTEYLRPRLDAMGVVPADRLLSVADGSRVLVGGAVTHRQRPATASG- 1026

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             + +V   +         
Sbjct: 1027 -VTFVNLEDETGMVNVVC 1043


>gi|53724334|ref|YP_104628.1| error-prone DNA polymerase [Burkholderia mallei ATCC 23344]
 gi|67643462|ref|ZP_00442208.1| DNA polymerase III, alpha subunit [Burkholderia mallei GB8 horse 4]
 gi|121599722|ref|YP_991465.1| error-prone DNA polymerase [Burkholderia mallei SAVP1]
 gi|124384859|ref|YP_001027457.1| error-prone DNA polymerase [Burkholderia mallei NCTC 10229]
 gi|126448927|ref|YP_001082423.1| error-prone DNA polymerase [Burkholderia mallei NCTC 10247]
 gi|167001206|ref|ZP_02267005.1| DNA polymerase III, alpha subunit [Burkholderia mallei PRL-20]
 gi|254174862|ref|ZP_04881523.1| DNA polymerase III, alpha subunit [Burkholderia mallei ATCC 10399]
 gi|254207050|ref|ZP_04913401.1| DNA polymerase III, alpha subunit [Burkholderia mallei JHU]
 gi|254357531|ref|ZP_04973805.1| DNA polymerase III, alpha subunit [Burkholderia mallei 2002721280]
 gi|71151820|sp|Q62F99|DNAE2_BURMA RecName: Full=Error-prone DNA polymerase
 gi|52427757|gb|AAU48350.1| DNA polymerase III, alpha subunit, form 2 [Burkholderia mallei ATCC
            23344]
 gi|121228532|gb|ABM51050.1| DNA polymerase III, alpha subunit, form 2 [Burkholderia mallei SAVP1]
 gi|124292879|gb|ABN02148.1| DNA polymerase III, alpha subunit [Burkholderia mallei NCTC 10229]
 gi|126241797|gb|ABO04890.1| DNA polymerase III, alpha subunit [Burkholderia mallei NCTC 10247]
 gi|147752592|gb|EDK59658.1| DNA polymerase III, alpha subunit [Burkholderia mallei JHU]
 gi|148026595|gb|EDK84680.1| DNA polymerase III, alpha subunit [Burkholderia mallei 2002721280]
 gi|160695907|gb|EDP85877.1| DNA polymerase III, alpha subunit [Burkholderia mallei ATCC 10399]
 gi|238524817|gb|EEP88248.1| DNA polymerase III, alpha subunit [Burkholderia mallei GB8 horse 4]
 gi|243062927|gb|EES45113.1| DNA polymerase III, alpha subunit [Burkholderia mallei PRL-20]
          Length = 1063

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/1050 (26%), Positives = 443/1050 (42%), Gaps = 78/1050 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             R+    L         +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 124  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLVQ 183

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D     QV        + +VA  +            D + A+     +++     
Sbjct: 184  LQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHAL 243

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 244  APNGEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----HT 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D +++
Sbjct: 298  PTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVKY 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   R
Sbjct: 352  ARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQR 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 411  REEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L   A      E     P +    EI+ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 471  DLLARFASVGLDPEV----PLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVE 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 527  NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 586

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 587  HIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 646

Query: 659  -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
               Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 647  VHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 706

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM   K K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A 
Sbjct: 707  LRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAK 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 767  LAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASLE 826

Query: 831  ---------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                     G   +   L+ ++G+G   AR I  A A  PF S+++   R       RR 
Sbjct: 827  AQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRACL---ERRD 883

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE+L  A A      +R   L                                 D+    
Sbjct: 884  LEALAAANAFATLAGNRRDALWQ------------------------AVAAAPIDEAVRP 919

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                   +     + R +G   + HP+ + +P L    +           G   R   +V
Sbjct: 920  ALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGLV 979

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             ++Q   T KG  + +VT  +         
Sbjct: 980  TARQMPGTAKG--VLFVTLEDETGCVNVIV 1007


>gi|308049973|ref|YP_003913539.1| DNA polymerase III, alpha subunit [Ferrimonas balearica DSM 9799]
 gi|307632163|gb|ADN76465.1| DNA polymerase III, alpha subunit [Ferrimonas balearica DSM 9799]
          Length = 1021

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/1035 (26%), Positives = 464/1035 (44%), Gaps = 87/1035 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F  L+  S+YS L+GA   + ++ + A     A+A+TD  +L   ++    A +AG++ 
Sbjct: 7    GFAQLRSASNYSFLQGASHPDELVQQAAELGYDALALTDECSLAGVVKAHMAAKSAGLKL 66

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQS 128
            I+G +  +D                    ++LL     GY  L  L++      D+G+  
Sbjct: 67   IVGSEFVLDQD-----------------RLILLAMNRVGYGELSALITLARRRCDKGQYR 109

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQ 187
                L W        L++            +   +   A +R     + F +R   V  +
Sbjct: 110  ----LEWDDLTLPNCLLL------------WAPAAPTEALERGRWLARRFAERIFLVAER 153

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
              RG +    +    LA   E+P+VA +      +      D L  +     + Q   R 
Sbjct: 154  MLRGGEGEWLTAQEALARQLEVPMVAADPVRMHEKARQPLLDALTCIRLGCSLEQAGGRL 213

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + YLK R+ +V       E L +TV +A RC F L       P  +  E       
Sbjct: 214  AGNAEAYLKPRTRLVQ--RHRAEWLASTVSLASRCQFSLDELRYEYPAELVPEGMSAS-- 269

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR + + G   R  +         +   ++L+ E  +I  + +  +FL + D +Q+
Sbjct: 270  --DHLRQETLKGARRRYGEAV------PESVSRQLEQEFALIDELGYHYFFLTIYDIVQF 321

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+  I +  GRGS A SV  Y L IT++DP + +LLFERFL+ +R   PD D+DF   R
Sbjct: 322  AKREAI-LHQGRGSAANSVVCYCLGITEVDPTKVNLLFERFLSRERDEPPDIDVDFEHQR 380

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAH 485
            R+EVI+Y+  KYG  R A   T  S + K+A+RD+G+ L +    ++R  + +   DP+ 
Sbjct: 381  REEVIQYIYRKYGRGRAALAATVISYRFKSAMRDLGKVLGIDEGLIERGLRGVDRRDPSQ 440

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            P   Q            L  P    L+ + ++L G  RH S H  G VI   PLS+LVP+
Sbjct: 441  PWQAQ-------LAALGLTGPRALLLIRLVEQLLGFPRHLSQHVGGFVISAGPLSELVPV 493

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
                 ++  V Q++   +E  GL+K D L L  L+ +++ L  + Q RG  + L+ +  D
Sbjct: 494  ENAAMAERTVIQWDKDDLEALGLLKVDILALGMLSAIRRCLQSVGQWRGQPMALADVVAD 553

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D   Y +L    ++G+FQ+ES      L  ++P    D++  +++ RPGPI  D +  Y 
Sbjct: 554  DPAVYDMLCRADSVGVFQIESRAQSNMLPRLRPRSYYDLVVQIAIVRPGPIQGDMVHPYL 613

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R++G E +      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM   K 
Sbjct: 614  KRRHGLEPVSYPSEAVREVLERTLGVPIFQEQVIKLAMVAAGFSGGEADKLRRAMASWKR 673

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              E++K + +   G ++ G S   A  IF  +  F +YGF +SH+A++A+++Y +AW+K 
Sbjct: 674  HGELEKFERKLKQGMAERGYSAEFADQIFRQIRGFGEYGFPESHSASFALLAYASAWLKY 733

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIYY 837
            HYPV F  A +  +        +  QD ++ N Q++P SVN    D +V    G   +  
Sbjct: 734  HYPVAFTCALLNSQPMGFYTPSQLVQDLQRHNGQVLPLSVNHSQWDHQVEAVQGQMALRL 793

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  +KG+       ++    +  F S+      V   +L+R  LE+L  A AL      
Sbjct: 794  GLRLVKGLSRQAVETLLAVRPEGGFSSVHQL---VSLARLDRGALEALASADALAELAGH 850

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R Q    L                +   +FA  + T    ++       + +     + +
Sbjct: 851  RHQARWLLAG------------EAQQLPLFAELEPTTDVTLSGP-----DEAEGIVADYQ 893

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G     HPL + +   +        + ++   G  ++LA +VV +Q+  T  G  + +
Sbjct: 894  QTGLSLGRHPLSLLREQGQLARCLTAAQLLSCQHGQLVQLAGLVVGRQRPGTASG--VTF 951

Query: 1018 VTFSEPAKEYEANFF 1032
            +T  +         +
Sbjct: 952  ITLEDETGNANVVVW 966


>gi|257081296|ref|ZP_05575657.1| DNA polymerase III alpha subunit [Enterococcus faecalis E1Sol]
 gi|256989326|gb|EEU76628.1| DNA polymerase III alpha subunit [Enterococcus faecalis E1Sol]
          Length = 1066

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/992 (30%), Positives = 495/992 (49%), Gaps = 60/992 (6%)

Query: 52   LFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
            +  A+EF +    AGIQPIIG +L+    +    +            ++L     +GYQ+
Sbjct: 1    MHGAVEFYEACQEAGIQPIIGLRLEYTPAEKEGHSE-----------LLLFAKNLKGYQQ 49

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L++L S     +          S L +     L  +T  + G + +  FF   Q A    
Sbjct: 50   LMQLSSSKMTTEGPFYLAE-HQSLLSD-----LFAVTLSAKGEVAQ-TFFEDEQQAVHAF 102

Query: 172  LTFKKLFGDR-LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                  F  + L+V        ++ R   +       +LP VA      L+ E+  A  V
Sbjct: 103  QQLASYFDPQSLFVEHSF--SMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTV 160

Query: 231  LMAVAHST----VVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFIL 285
            L ++  +          +   +      +    +M+ I     E ++NT+++A  C   +
Sbjct: 161  LESIKENNQLNITSQTPEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDI 218

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
             +H  +LP F   +     +   + LR   +  L  R+           + Y++RL+ EL
Sbjct: 219  PLHQKLLPHFPVPDN----QTAGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKEL 267

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             +I  M F  YFLIV D + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFE
Sbjct: 268  TIIHNMGFDDYFLIVWDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFE 327

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R +MPD D+D   +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R  
Sbjct: 328  RFLNPERYTMPDIDLDIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVF 387

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
             +  S+ +R    +PN     +  +A  +  R +E     P+   L + + +LEGL RH 
Sbjct: 388  GLSQSEANRWSAAVPNKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHV 446

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            STHAAG+VI D  L  LVP+      ++ +TQF M  +EK GL+K DFLGL+ L+++  +
Sbjct: 447  STHAAGVVISDENLLNLVPLQPGSN-EILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDT 505

Query: 586  LDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            L  + +     + L+ IP DD  T  L     T G+FQ ES+G+R  L  + P  IEDI 
Sbjct: 506  LTAVKRVYNRTIRLNQIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIA 565

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            A+ +LYRPGP+ NI V+  RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G
Sbjct: 566  AVNALYRPGPMQNIDVFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAG 625

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            +SL +AD+LRRA+ KK K+ +D+++  F++GA + G  K  A  +++ + +FA+YGFN+S
Sbjct: 626  FSLGQADILRRAISKKKKDVLDEERNHFVNGALQQGYPKETANQVYDYIERFANYGFNRS 685

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HA AY+ I +Q A++K HYP  F  A +     N  KIK++  +AR+    I+ PS+N  
Sbjct: 686  HAFAYSFIGFQMAYLKVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQS 745

Query: 825  CVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVL 882
               F +    +I +  +++KG+     ++I+ E   + P+ + ++F  R+D K L    +
Sbjct: 746  HYSFYLNQQQQILFGFSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENI 805

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E L+  GA D    +R QL   L++  +         +    ++    K    +      
Sbjct: 806  EPLIAIGAFDEIAPNRRQLAVGLESNIQSILL-----SGGSMDLLETLKPKEEEIADYPL 860

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                    ++      LG Y SGHP + +K   L K      +     +     +L   V
Sbjct: 861  EERLEQEEQY------LGVYLSGHPTEEFKKTRLAKQT----QLVHELVENQPTKLLIYV 910

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + +  +T+KG ++ +V   +         FP
Sbjct: 911  KNIRTIRTKKGEQMAFVDGDDTTGSISLTLFP 942


>gi|260584014|ref|ZP_05851762.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
            700633]
 gi|260158640|gb|EEW93708.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
            700633]
          Length = 1112

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/1031 (30%), Positives = 525/1031 (50%), Gaps = 55/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQV S YSLL   + L   +          +A+TD   L  A+EF        I+P
Sbjct: 2    TFTILQVTSGYSLLRSTIDLYRYVMTAKELGYQKLALTDEGVLHGAIEFYNLCRNQNIEP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC        N +             S+++      GYQ LIEL ++     Q  + V
Sbjct: 62   IIGCLFQYKQWRNAE----------AFSSMIVYAKDEIGYQSLIELSTQ----YQKSKLV 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQR 188
               +  + +  +E L ++    +            +VA +R L   +  +   +++ ++ 
Sbjct: 108  SKDMEKIIKEASEHLQIVFPQENSEWALECSNG--EVAFQRWLFEAEERYFPNIHLGIES 165

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            ++        ++        + L+    + +L  ED  ++ VL A+     +S   +  V
Sbjct: 166  NQIL-PIPLEELEAWGQDFSMKLLPFVKTFYLKAEDDFSYRVLKAIGDGETLS-TTQAEV 223

Query: 249  TPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +  +YL++   +    S +   + +    E      + L  H  +LP+F   E       
Sbjct: 224  SGQYYLQDEKTLTQQSSTILEGKLVRQLEEFVDSLKWKLSKHKLLLPKFQTPEG------ 277

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                    +   L+    Q    K     +Y  RL++EL++I +M F  YFLIV D +++
Sbjct: 278  ------KMSQEYLQEICQQSLKDKELVKDEYESRLNYELSIIHQMGFDDYFLIVWDIMKY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I  GPGRGS AGS+ +Y L IT +DP+ + LLFERFLNP+R +MPD D+DF  +R
Sbjct: 332  AHEAGIQTGPGRGSAAGSLVSYLLNITKVDPIEYQLLFERFLNPERYTMPDIDLDFPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R++++ YV+ KYG   VAQI TFG+  +K ALRDV R L +   Q     K IPN     
Sbjct: 392  REDILDYVRRKYGENHVAQIATFGTFGSKQALRDVCRVLGLTTVQAGEWSKAIPNQLGIN 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP-M 545
            +   A       +      P    + E + ++EGL RH STHAAG+V+ D+PL+ ++P +
Sbjct: 452  LKT-AYEQSKNLQTLVSRSPKNQLIFETACRIEGLPRHLSTHAAGVVLYDKPLTDVIPLI 510

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
            Y+D +  +P+TQ+ MK++E+ GL+K DFLGL  L++L  S++        ++ L+ IP D
Sbjct: 511  YKDQQ--MPITQYTMKYVEQIGLLKMDFLGLTNLSILHDSIELTKSIYQHEIILNEIPLD 568

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T  L     T GIFQ ES G+R+ L+ ++P  +EDI A+ +LYRPGP++ I  +  R
Sbjct: 569  DEKTLELFQMADTNGIFQFESDGIRRVLKKLRPTNLEDIAAVNALYRPGPMEQIDTFIKR 628

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+E +   HP+++ +L+ T GV++YQEQVMQ+   ++G++L +AD+LRRA+GKK  + 
Sbjct: 629  KHGQEVVKYPHPILESILQSTYGVMVYQEQVMQVTSQMAGFTLGQADILRRAIGKKDAKV 688

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            ++ +K  FI GA   GI    A  +++ + +FA+YGFN+SHA AY++++YQ A+ K HYP
Sbjct: 689  IETEKAHFIEGAIGKGIDVASATEVYQYIERFANYGFNRSHAFAYSLLAYQLAYFKAHYP 748

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
              F  A +    D   K++ +  +A+Q  I I  PS+NT   D+    + I+  L AIKG
Sbjct: 749  RAFYTAILRFVGDRSPKLQTYFIEAKQRGISIKNPSINTSVDDYTATIDGIFIGLNAIKG 808

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     + I+ +   + PF    DF  R+  +   + VLE+L+ AGA D  G +R  L  
Sbjct: 809  LRRDFIQEILTQRKQNGPFIDFMDFAFRIGKRYCKKEVLEALIDAGAFDELGKNRATLRA 868

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS--SVRFENEQRVLGF 961
            ++D + +  ++   N   +            ++++  + F  E+S    + E E  VLGF
Sbjct: 869  TIDAVIESVKFHGSNIALE-----------LNEEMYPKYFEEEDSNIIEKIEREIAVLGF 917

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
              S  P + Y+ + ++           +     + +  ++ + ++ +T+KG  + + T  
Sbjct: 918  PVSAFPTEPYEILYKEQKANRISTIYES---KLVSVLGILKNIRKTRTKKGEPMAFGTIQ 974

Query: 1022 EPAKEYEANFF 1032
            +   E +   F
Sbjct: 975  DETGEIDFVVF 985


>gi|78067625|ref|YP_370394.1| error-prone DNA polymerase [Burkholderia sp. 383]
 gi|77968370|gb|ABB09750.1| DNA polymerase III, alpha subunit [Burkholderia sp. 383]
          Length = 1068

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/1046 (26%), Positives = 451/1046 (43%), Gaps = 65/1046 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     ++++        IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASHAEELVERAFELGYRGIAITDECSLAGAPRMHVAAKAKGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +IG   D+   +       G  P P    +VLL    EGY  L EL+S   +    K +
Sbjct: 69   LVIGSYFDVTPDE----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISWRRMA-APKGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             ++    L     E   +        I    +   + V + ++  F+  FG+R  + L Q
Sbjct: 124  YQLTSRMLSAPPAEFAHLRGIPDCFAILVPTYPVRADVLDAQVAWFRTTFGERARLGLVQ 183

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D  +  ++        + +VA  +         E  DV+ A+     VS+     
Sbjct: 184  LQRALDGAQREEIRAAGERRGVRIVALGDVTMHRRSCKELQDVMTAIRVGMPVSECGYAL 243

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R+ + +++S  P  +E T  I   C F L       P  I  +       
Sbjct: 244  APNAEQHLRGRNRIGNLYS--PAEIEETCTILDTCDFKLDTLRYEYPDEIVPKG----LT 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L  + +AG   R  QG   K        +++ +EL++IA++ +  +FL V D +++
Sbjct: 298  PTSYLEQETMAGAATRYPQGVPEK------VSKQIRYELDLIAQLSYEPFFLTVYDIVKY 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  NI +  GRGS A SV  + L IT+++P + ++LFERF++ +R   PD D+DF   R
Sbjct: 352  ARSQNI-LCQGRGSAANSVVCFCLGITEVNPEQSTMLFERFISAERGEPPDIDVDFEHQR 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+++  KYGH R A      + + +  LR+ G+AL +    VDR+ K         
Sbjct: 411  REEVIQHIYEKYGHNRAALAAAVSTYRPRGVLRETGKALGVDPMLVDRVAKAHRWFDGSR 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              LQ  +            P +     ++ +L    RH S H+ G VI    L++LVP+ 
Sbjct: 471  DLLQQFSTIG----LDPETPLILAWARLAARLLNFPRHLSQHSGGFVISRGKLTRLVPVE 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGV------KVDLS 599
                    V Q++   +E  GL+K D L L  L+ L ++ D   A RG          L 
Sbjct: 527  NAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMRTAWRGPPEPDGEPFTLK 586

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI    
Sbjct: 587  HIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPQTYYDLVIEVAIVRPGPIQGGA 646

Query: 659  -VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
               Y  R+ G EK+      + P L+ T GV I+QEQVMQIA + +G++  EAD LRRAM
Sbjct: 647  VHPYLKRRQGIEKVSYPKEELKPALERTYGVPIFQEQVMQIAMIAAGFTPGEADQLRRAM 706

Query: 718  GK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
               K K  +++   + + G  +       A  IFE +  F DYGF +SHAA++A ++Y +
Sbjct: 707  AAWKRKGNLEQYHRKIVDGMRERDYPPDFAEQIFEQIKGFGDYGFPESHAASFAKLAYAS 766

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--------- 827
            +W+K H P  FLAA +  +        +  QDA++  +Q++P  V     D         
Sbjct: 767  SWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHGVQVLPIDVTQSNWDASLEALPDQ 826

Query: 828  -FKVGDNRIYYSLAAIKGVGT-TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                G   +   L+ ++G+G     R     +A  PFD+++    R   ++  R +    
Sbjct: 827  PPPHGQPAVRLGLSLVRGLGEAAARRIEAARTAAGPFDTVDTLARRAQLER--RDLEALA 884

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
                     G+ R  L Q++                   ++ A      ++K  L   S 
Sbjct: 885  AANALATLAGHRRDALWQAV-------------AAAPERDLLATAPIDEAEKPALGAPSE 931

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +  +    +    G     HP+ + +P LR   +    E      G   R   +V ++Q
Sbjct: 932  ADDIL---ADYHTTGLTLDRHPVALLRPELRARRLSSAAELHDRPDGRLARACGLVTARQ 988

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANF 1031
               T KG  + ++T  +         
Sbjct: 989  MPGTAKG--VMFMTLEDETGCVNLIV 1012


>gi|163787271|ref|ZP_02181718.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium ALC-1]
 gi|159877159|gb|EDP71216.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium ALC-1]
          Length = 1128

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/851 (36%), Positives = 455/851 (53%), Gaps = 66/851 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------- 58
             FVHL  HS +S+L+  +S+ +++   A +  PA+A+TD  N+  A  F           
Sbjct: 260  DFVHLHNHSQFSILQSTISIKDLVAAAAKENMPAVALTDHGNMMGAFHFVSAVGNHNKGV 319

Query: 59   ---SQKACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                 +A   G       I+PIIGC+        +   +  KT       IVL+    +G
Sbjct: 320  KAQHAQAEENGDEKKGKLIKPIIGCEFF------VCEKHDDKTRKDNGYQIVLMAKNKKG 373

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
            Y  L +L S  +  D      RI    L E   E LI LTG   G +           AE
Sbjct: 374  YHNLAKLSSAAFT-DGFYYVPRIDKQ-LIEQYKEDLICLTGNLYGEVPSKVLNVGENQAE 431

Query: 169  KRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            + LL +K  F D LY+ L RH   D  R    ++Q A  H++ LVATNN+ ++ +E+  A
Sbjct: 432  EALLWWKDTFQDDLYIELMRHNQEDENRVNPVLIQFAKKHDVKLVATNNTYYVEQENANA 491

Query: 228  HDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            HD+L+ V      +                ++Y K+  EM ++F D+PEA+ N  ++  +
Sbjct: 492  HDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSSEEMKALFRDVPEAIVNIQDVVDK 551

Query: 281  CSFILQVHAPILPRFIEK--------ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
                      +LP F           E D  ++ E   L++    G E R        G 
Sbjct: 552  IEPYELARDVLLPAFDIPNEFKHEDDEADGGKRGENAFLKHLTYKGAEKRY-------GD 604

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
               + ++RLDFEL+VI    + GYFLIV DFI+ A+K ++ VGPGRGS AGSV AY L I
Sbjct: 605  ITPEIKERLDFELSVIENTGYPGYFLIVEDFIREARKMDVSVGPGRGSAAGSVVAYCLWI 664

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV NKYG  +VAQIIT+G++
Sbjct: 665  TNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGSNQVAQIITYGTM 724

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFR 499
             AK+++RD  R L +P    DR+ KLIP              D A     + +   +   
Sbjct: 725  AAKSSIRDTARVLDLPLGDADRISKLIPTMSKLGKIFGLSEKDLAKKFRAEDLEKVNELL 784

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
                 +      +  ++ LEG  R+   HA G++I    ++  VP+     SDL VTQF+
Sbjct: 785  NISDGEDLQAETVNQARVLEGSVRNTGIHACGVIITPGDITNYVPVALAKDSDLYVTQFD 844

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTL 618
               +E AGL+K DFLGLKTLTL++ ++  +  +  + +D    P DD ETY L     T+
Sbjct: 845  NSVVESAGLLKMDFLGLKTLTLIKDTVKIVKAKHDILLDPENFPLDDEETYALFQRGETV 904

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            GIFQ ES GM++ ++ ++P   +D+IA+ +LYRPGP++ I  +  RK+G E+I    P +
Sbjct: 905  GIFQYESPGMQKHMKNLKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGDEEIDYDLPEM 964

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  LKET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK    +DK K +FI  AS 
Sbjct: 965  EEYLKETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQASA 1024

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             G+       I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA ++  M++
Sbjct: 1025 KGLDAKKLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMND 1084

Query: 799  VEKIKKFCQDA 809
            ++ +  F ++ 
Sbjct: 1085 IKSVTFFMEEC 1095


>gi|134297021|ref|YP_001120756.1| error-prone DNA polymerase [Burkholderia vietnamiensis G4]
 gi|134140178|gb|ABO55921.1| DNA polymerase III, alpha subunit [Burkholderia vietnamiensis G4]
          Length = 1071

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/1057 (25%), Positives = 456/1057 (43%), Gaps = 68/1057 (6%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +   +   P +  L   S++S L GA     ++ + A      +AITD  +L  A     
Sbjct: 1    MAAQITWLPDYAELFCRSNFSFLHGASHAEELVARAAELGYRGLAITDECSLAGAPRMHV 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A A G+  ++G    +   +       G  P P    +VLL    EGY  L EL+S   
Sbjct: 61   AAQAQGLPLVVGAYFAVTPDE----VAPGHDPGPGAFGLVLLAQNREGYGNLAELISWRR 116

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            +    K +  +    L         +        I    +   + V + ++  F+  FG+
Sbjct: 117  MA-APKGTYTLTSRMLSAPPAAFAHLRGMPDCFAILVPVYPVRADVLDAQVAWFRATFGE 175

Query: 181  RLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R  + L Q  R  D  +  ++        +P+VA  +            DV+ A+     
Sbjct: 176  RARLGLVQLQRALDGAQREEIRAAGERRGVPVVALGDVTMHRRSCKPLQDVMTAIRVGMP 235

Query: 240  VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            V++         + +L++R  +  ++S  P+ +  T EI   C F L       P  I  
Sbjct: 236  VAECGYALAPNAEQHLRSRQRIGQLYS--PDEIAQTCEILDACDFELGSLRYEYPDEIVP 293

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                        L  + +AG   R  +G   K        + +  EL++IA++ +  +FL
Sbjct: 294  AG----LTPTRYLEQETLAGARARYPRGVPEK------VAKLIRHELDLIAKLSYEPFFL 343

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
             V D +++A+  NI +  GRGS A SV  Y L IT++DP + ++LFERF++  R   PD 
Sbjct: 344  TVYDIVKFARSRNI-LCQGRGSAANSVVCYCLGITEVDPDQSTMLFERFISEKRGEPPDI 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF   RR+EVI+++  KYG +R A      + + +  LR+ G+AL +    VDR+ K 
Sbjct: 403  DVDFEHQRREEVIQHIYRKYGKDRAAIAAAVSTYRPRGVLRETGKALGVDPMLVDRVAKA 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                      L+  A          A P +     ++ +L    RH S H+ G VI    
Sbjct: 463  HRWFDGSRDLLKQFASTG----LDPATPLIATWATLAARLLNFPRHLSQHSGGFVISRGK 518

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVD 597
            L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ D   A RG + D
Sbjct: 519  LTRLVPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPQPD 578

Query: 598  -----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                 +  +P DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RP
Sbjct: 579  GEPFTMKHVPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLKPRNYYDLVVQVSIVRP 638

Query: 653  GPIDNI--VVYNNRKN---GKE--KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GPI       Y  R+    G+E  K+      +  +L+ T GV I+QEQVMQIA + +G+
Sbjct: 639  GPIQGGAVHPYLKRRRIMSGEEQGKVTYPSDALKEVLERTLGVPIFQEQVMQIAIVAAGF 698

Query: 706  SLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            +  EAD LRRAM   K K  ++K  ++ + G      ++  A  IFE +  F +YGF +S
Sbjct: 699  TPGEADELRRAMAAWKRKGNLEKYHDKIVEGMLARNYTREFAEQIFEQIKGFGEYGFPES 758

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAA++A ++Y ++W+K H P  F+AA +  +        +  QDA++  +Q++P  V   
Sbjct: 759  HAASFAKLAYASSWLKCHEPAIFVAALLNSQPMGFYAPAQLVQDAKRHGVQVLPADVTQS 818

Query: 825  CVDFKVG----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
              +  +              +   LA ++G+G   AR I  A A  PFDS++    R   
Sbjct: 819  GWETSLEALPGQPPPHGQPAVRLGLALVRGLGEAAARRIEAARAAGPFDSVDALARRAQL 878

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            ++  R +             G+ R  L Q++                   ++ A      
Sbjct: 879  ER--RDLEALAAANALAALAGHRRDALWQAV-------------AAAPERDLLAAAPIDE 923

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
            +++  L   S  +  +    +   +G   + HP+ + +P LR   +    E      G  
Sbjct: 924  TEQPALGAPSEADDIL---ADYHTIGLTLNRHPVALLRPALRAQRLSSAAELRDRPDGRL 980

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             R   +V+++Q   T KG  + ++T  +         
Sbjct: 981  ARACGLVIARQMPGTAKG--VMFMTLEDETGCVNVIV 1015


>gi|170734171|ref|YP_001766118.1| error-prone DNA polymerase [Burkholderia cenocepacia MC0-3]
 gi|169817413|gb|ACA91996.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia MC0-3]
          Length = 1071

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/1049 (25%), Positives = 454/1049 (43%), Gaps = 68/1049 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     ++++        IAITD  +L  A      A   G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASHAEELVERADELGYRGIAITDECSLAGAPRMHVAAKEKGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +IG   D+   +       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVIGSYFDVTPDE----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMEAPKGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             ++    L     +   +        I    +   + V + ++  F+  FG+R  + L Q
Sbjct: 124  YKLTSRILSAPPAKFAHLRGMPDCFAILVPTYPVRADVLDAQVAWFRATFGERARLGLVQ 183

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D  +  ++        + LVA  +            DV+ A+     V++     
Sbjct: 184  LQRALDGVQRDEIRAAGKRRGVRLVALGDVTMHVRSCKALQDVMTAIRVGMPVAECGYAL 243

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  +  +FS   E +  T  +   C F L       P  +          
Sbjct: 244  APNAEQHLRSRGRIAKLFS--AEEIGETCAMLDACDFDLDDLKYEYPLELVPRG----HT 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L+ +  AG+  R   G   K        +++ +EL +IA++++  +FL V D +++
Sbjct: 298  PTSYLKQETWAGVARRYWNGVPEK------VAKQIRYELALIAKLEYEPFFLTVYDIVKY 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  NI +  GRGS A SV  Y L IT+++P + ++LFERF++  R   PD D+DF   R
Sbjct: 352  ARSQNI-LCQGRGSAANSVVCYCLGITEVNPDQSTMLFERFISEKRGEPPDIDVDFEHQR 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+++  KYG +R A      + + +  LR+ G+AL +    VDR+ K         
Sbjct: 411  REEVIQHIYKKYGKDRAALAAAVSTYRPRGVLRETGKALSVDPMLVDRVAKGHRWFDGSR 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              LQ  A          A P +    E++ +L    RH S H+ G VI    L++LVP+ 
Sbjct: 471  DLLQQFASTG----LDPATPIIQTWAELAGRLLNFPRHLSQHSGGFVISRGKLTRLVPVE 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------AQRGVKVDLSL 600
                    V Q++   +E  GL+K D L L  L+ L ++ D        A+ G    L  
Sbjct: 527  NAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPAKDGKPFTLKH 586

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI-- 658
            IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI     
Sbjct: 587  IPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRNYYDLVVQVSIVRPGPIQGGAV 646

Query: 659  VVYNNRKN---GKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              Y  R+    G+EK  +      +  +L  T GV I+QEQVMQIA + +G++  EAD L
Sbjct: 647  HPYLKRRRIVAGEEKGEVTYPSDALKEVLVRTLGVPIFQEQVMQIAIVAAGFTPGEADDL 706

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM   K K  ++K +++ ISG  +   ++  A  IFE +  F +YGF +SHAA++A +
Sbjct: 707  RRAMAAWKRKGNLEKYQDKIISGMLERNYTREFAEQIFEQIKGFGEYGFPESHAASFAKL 766

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD----- 827
            +Y ++W+K H P  FLAA +  +        +  QDA++  ++++P  V     +     
Sbjct: 767  AYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHRVKVLPIDVTQSGWEASLEA 826

Query: 828  -----FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                    G   +   L+ ++G+    AR I  A    PFDS++    R   ++  R + 
Sbjct: 827  LPDQPPPHGQPAVRLGLSLVRGLSEAAARRIEAARTAGPFDSVDSLARRAQLER--RDLE 884

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
                        G+ R  L Q++                   ++ A       ++  L  
Sbjct: 885  ALAAANALATLAGHRRDALWQAV-------------AAAPERDLLAAAPIDEVEQPALGA 931

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             S  +  +    +    G   + HP+ + +P LR   +    E      G   R   +V+
Sbjct: 932  PSEADDIL---ADYHTTGLTLNRHPVALLRPALRAQRLSSAAELRDRPDGRLARACGLVI 988

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            ++Q   T KG  + ++T  +         
Sbjct: 989  ARQMPGTAKG--VMFMTLEDETGCVNVIV 1015


>gi|289550541|ref|YP_003471445.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
            HKU09-01]
 gi|289180073|gb|ADC87318.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
            HKU09-01]
          Length = 1064

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/1024 (32%), Positives = 525/1024 (51%), Gaps = 81/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL +H+SY LL  +L + +++ K +     A+AITDTN L+   +F     +A I+PI 
Sbjct: 3    VHLNIHTSYDLLNSSLKIEDVVAKASKQGYTALAITDTNVLYGYPKFYDACVSANIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + I                 +    VL     EG   + +L S + + D       +
Sbjct: 63   GMTVYITDG-------------LSSVEAVLYALNNEGLTAMYQLSSAIKMKD----KSLV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               W+ +  +   I+                  +  E++     + F +  ++ +     
Sbjct: 106  PFEWITKYQSNIAIV-----------------FKQVEQKHGHILEKFLNDEFIYVNSDSK 148

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D               LP V    + +L++ D +    L A+  +  +   +      +
Sbjct: 149  ND-------------FGLPRVWLRTARYLNDNDADTIAALQAIKLNEKLDLVNEMDNLNE 195

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            H+L+     +   +   E    T  +A +C+  +Q H  +LP+F   +            
Sbjct: 196  HFLEASE--LDELTVSQEEWAQTQALAEKCNAEIQYHQSLLPQFKTPDNSS--------- 244

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
               + A L  +L Q       + ++Y  RL+ E  +I  M F  YFLIV+D I +AK ++
Sbjct: 245  ---SKAYLWKQLVQRLKTLQLNQKNYIDRLNHEFKIITNMGFEDYFLIVSDLIHYAKTHD 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDP++++LLFERFLNP+R++MPD DIDF   RR+ VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLGITTIDPIKYNLLFERFLNPERVTMPDIDIDFEDTRRERVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             YVQ KYG   V+ I+TFG L A+A  RDVGR +      +  + KLIP+     ++L  
Sbjct: 362  EYVQQKYGEYHVSGIVTFGHLLARAVARDVGRIMGFDEITLAEISKLIPHQLG--ITLNQ 419

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
              D+ +F++    +   ++  E+ +KLEGL RH STHAAGI+I D+PL   VP+   +  
Sbjct: 420  AYDNDKFKDFVHRNYRHEKWFELCKKLEGLPRHTSTHAAGIIINDQPLFNFVPL--TIGD 477

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + +  +     V++D+  IPFDD + + 
Sbjct: 478  TGLLTQWTMTEAERLGLLKIDFLGLRNLSIIHQIVTQVKYDLNVEIDIEAIPFDDPKVFA 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ ++P   EDI+A+ SLYRPGP++ I  Y  R++   K
Sbjct: 538  LLSQGETTGIFQLESEGVRHVLQRLKPQHFEDIVAVTSLYRPGPMEEIPTYITRRHEPSK 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+MQIA   +G+S  EAD+LRRAM KK +  ++ +++
Sbjct: 598  VAYLHPDLEPILKSTYGVIIYQEQIMQIASRFAGFSYGEADILRRAMSKKNRAVLENERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A 
Sbjct: 658  HFVEGAQRNGYEEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + N +K     ++A+   I I+PP +N     +K     IY SL AIKGVG  + 
Sbjct: 718  ILSNVVGNEQKTAAIIEEAKIQGIAILPPHINHSHWFYKATPQGIYLSLGAIKGVGYQSV 777

Query: 851  RHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+    +   F S +DF  R+  +   R++LESL+  GA D  G++R   LQ +D   
Sbjct: 778  KTIVNNRKEQGNFKSFKDFSKRIPKRIKTRKLLESLILVGAFDSLGHNRATSLQMIDEAV 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 V         +IF     T  D+I  E+    N       E+  LGFY S HP++
Sbjct: 838  DDITHV-------GLDIFDIAGMTPKDEI--EEREELNDLQLSTYEKEYLGFYISQHPVE 888

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                  + +GI     +          +       +Q +T+KG ++ +V  ++  K  + 
Sbjct: 889  KMFHRKQFLGIYTLANAANHQP-----ILVQFDQIKQIRTKKGQQMAFVVVNDGIKVIDG 943

Query: 1030 NFFP 1033
              FP
Sbjct: 944  VIFP 947


>gi|225873142|ref|YP_002754601.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC
            51196]
 gi|225792983|gb|ACO33073.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC
            51196]
          Length = 1072

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1040 (28%), Positives = 500/1040 (48%), Gaps = 43/1040 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +V L   S++S LEG  +  ++ ++ AA Q PA+A+ D N L+ A  F   A   G+Q 
Sbjct: 4    RYVELHAASAFSFLEGGSNPESLTERAAALQMPAMALLDRNGLYGAARFHTSAQRHGVQA 63

Query: 70   -IIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             I       +    L         +PT P  + LL +T +GYQ L +L+SR  L +  KQ
Sbjct: 64   NIGAEVAVPEFGARLTPPAWLPHLWPTEPVRLPLLCATRKGYQNLCQLISRYKLREPSKQ 123

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
                 ++ L++   EGLI LTGGS GP+  A         +K L     +F    +YV L
Sbjct: 124  EGAARVNELEQFA-EGLICLTGGSEGPLAAALMQGGEAAGQKLLHRLTAIFGHQHVYVEL 182

Query: 187  QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH   ++ +R    +++A+   LP+VATN   + SE D E  D+  A+ H T + +   
Sbjct: 183  QRHHDREQEWRNQAALRIAHKLRLPMVATNGVRYASERDREVLDLFTAIRHHTPLDRAGH 242

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                    +L++  EM ++F D+P A+ENT+E++ R +F L       PR+     D + 
Sbjct: 243  LLSANSLRHLRSAREMAALFRDIPAAIENTIELSSRLAFQLSDLGYEFPRYPVPAGDCM- 301

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               ++ LR +   G+ +R    +           ++++ EL++IAR+ F+GYFLIV D I
Sbjct: 302  ---DSFLRKRVQEGVALRY--NSRHNHDLLARVHKQVERELSLIARLGFAGYFLIVWDII 356

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++ K+++I V  GRGS A SV  YAL IT +DP+   LLFERFLN +R   PD D+D   
Sbjct: 357  RFCKQHDILV-QGRGSAANSVVCYALEITAVDPVGMDLLFERFLNENRGEWPDIDLDLPS 415

Query: 425  D-RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + +R++ I+YV  +YG    A      + + K+A R+VG+AL      + RL  L+ N  
Sbjct: 416  EEKREQAIQYVYQRYGELGAAMTANVITYRGKSAAREVGKALGFDADALQRLSGLVANFE 475

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                +  ++A   R      A P + R LE+  +++ + RH   H+ G+VI    L+Q+V
Sbjct: 476  WKGPT-DSLAHSFRHAGFDPAQPRIARYLELCTRIQDMPRHLGQHSGGMVICQGQLNQVV 534

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
            P+ R       V Q++ +     G+IK D LGL  + +L+  ++ +    G ++DL+ +P
Sbjct: 535  PVERASMPGRTVVQWDKEDCADMGIIKVDLLGLGMMAVLKDCVELIPRHYGERIDLAQLP 594

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
              D   Y  L    T+G+FQ+ES     +L    P    D++  V++ RPGPI    +  
Sbjct: 595  Q-DEAVYRTLQRADTVGMFQVESRAQMASLPRNMPAKFYDLVVQVAIIRPGPIVGKMMHP 653

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+ GKE +   HP ++P+L+ T GV ++QEQ+++IA  ++ +S +EA+ LRRA+  +
Sbjct: 654  YMRRRQGKEPVTYPHPSLEPVLQRTLGVPLFQEQLLRIAMTVANFSGTEAEELRRAVGMR 713

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            +  E M   + +  +G + NGI+      I + ++ FA YGF +SHAA++A+I+Y +A++
Sbjct: 714  RSWERMKNLESKLRAGMAANGIAPATQEQIIQQISSFALYGFPESHAASFALIAYASAYL 773

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----R 834
            K  Y   F  A +  +           +DA++  +++ P  +        +         
Sbjct: 774  KVKYLAAFTCALLNNQPMGFYMPAVIVKDAQRHGLRVKPIDIQISAWPCTLEQEPDDSLS 833

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +   L   +G+   TA   + A   + PF S E+  +RV    L+R+ L  L   GAL+ 
Sbjct: 834  LRLGLGYARGLRQRTAEATLHARQENGPFSSAENLVARVP--ALSRKELALLARIGALNS 891

Query: 894  FGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
                  R   L  ++   K               +FA       ++          +  R
Sbjct: 892  LDQVAHRRDALWQIERAGK-----------PEGPLFAQSNEALREQDVALPLMPMTTEER 940

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +    G     HP+   +  L   GI           G  +R+A  V+++Q+  T K
Sbjct: 941  LVADYFGTGLTVGKHPMSYRRQELDHAGILTASALQQFQDGKLVRVAGCVIARQRPGTAK 1000

Query: 1012 GSRIGWVTFSEPAKEYEANF 1031
            G    +++  +         
Sbjct: 1001 G--FVFLSMEDETGIANIIV 1018


>gi|289208277|ref|YP_003460343.1| DNA polymerase III subunit alpha [Thioalkalivibrio sp. K90mix]
 gi|288943908|gb|ADC71607.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. K90mix]
          Length = 1044

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/1045 (25%), Positives = 457/1045 (43%), Gaps = 79/1045 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            + P +  L   S++S L GA     ++++  A    A+A+TD  +L   +     A   G
Sbjct: 7    EPPEYAELMAVSNFSFLRGASHPEELVERARALGYRALALTDIASLAGVVRAHAAAKECG 66

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY--LLDQ 124
            +  I+G    +                   P++ LLV  A GY  L  L+++        
Sbjct: 67   LHLILGATFQLADG----------------PALTLLVRNAAGYAALCRLITQARGAADKG 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 R  L  L      G  +L       I+      +   A + L  +       L V
Sbjct: 111  HYHLTRADLDVLPAEARAGWHVLLR-----IEPEPAEPALAEAVRWLAGWATPGQAHLAV 165

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            + Q     D    ++  QLA    LP+VA  +    S       DVL A+   T V++  
Sbjct: 166  S-QLRTPEDATLATRARQLAEATRLPIVACGDVHMHSRGRRALQDVLTALRQRTTVAEAA 224

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              R    +  L+ R ++ +++      L  +V IAR C F L       P          
Sbjct: 225  PARFPNGERCLRPRDDLATLYP--APWLAASVRIARDCDFSLDAVTYRYPTDPLPR---- 278

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                   LR + + G   R   G   K        ++++ EL +IA++ +  YFL V D 
Sbjct: 279  DTSPAAYLREETLKGARGRWPDGIPPK------VTEQIERELGIIAQLGYEPYFLTVYDI 332

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+   I +  GRGS A S   YAL IT +DP R S+LFERF++ +R   PD D+DF 
Sbjct: 333  VRFARGRGI-LCQGRGSAANSAVCYALGITAVDPSRSSMLFERFISAERGEPPDIDVDFE 391

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL-CKLIPND 482
             +RR+EVI+Y+  +YG ER A   T    + ++ALRDVGRAL +  +++D L   L   D
Sbjct: 392  HERREEVIQYIYQRYGRERAALACTVIRYRRRSALRDVGRALGISRARLDALTANLAWWD 451

Query: 483  PAHPVSLQAIADDSRFREARLADPS---VDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
               P          R RE  L DP      +   ++ +L G  RH S H  G VI +  L
Sbjct: 452  DGIPA--------ERLREVGL-DPDGALARQWQALTAELLGFPRHLSQHTGGFVIAEGRL 502

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
             +LVP+      +  V Q++   ++  GL+K D L L  L+ ++++L+ +AQ RG    L
Sbjct: 503  DELVPIENAAMPERSVIQWDKDDLDAVGLLKIDVLALGMLSCVRRALELMAQHRGRDWGL 562

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID-- 656
            + +P +D   Y +L    TLGIFQ+ES      L  ++P    D++  +++ RPGPI   
Sbjct: 563  ADVPAEDPAVYRMLQKADTLGIFQIESRAQMSMLPRLKPANFYDLVIEIAIVRPGPIQGE 622

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+   E++   +  +  +L  T GV I+QEQV+++A + +G+S  EAD LRRA
Sbjct: 623  MVHPYLKRRAHPERVSYPNAEVKRVLGRTLGVPIFQEQVIELAMVAAGFSAGEADGLRRA 682

Query: 717  MGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            +G   +  ++ + +ER + G  + G  +  A  +++ +  F +YGF +SH+A++A+I++ 
Sbjct: 683  IGAWRRTGQLARYRERLMDGMRQRGYPEKFAEQLYKQILGFGEYGFPESHSASFALITWV 742

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD--- 832
            ++W+K H P  F  A +  +        +   DAR+  +++ P  V     D  V     
Sbjct: 743  SSWLKCHEPAIFACALLNSQPMGFYAPAQIVADARRHGVEVRPVDVRCSDWDCTVEPVAG 802

Query: 833  ---NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                 +   L  + G+    A  ++ A A++PF  + D  +R     L R     L  A 
Sbjct: 803  SDALALRLGLNRVGGLAQAVAERVVAARAERPFADVPDLVARA---ALTRAQANRLARAD 859

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-TFSDKITLEKFSVENS 948
            AL     +R Q   + + +             +   +FA     T  +          ++
Sbjct: 860  ALKGLAGNRHQARWATEAV------------EEPLPLFADAPAETVREADVTPLLPGPDA 907

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
                  +    G     HPL + +P L +  +      +        R A +V+++Q+  
Sbjct: 908  VDDLVQDYATQGLSLGPHPLALMRPFLEQRRLPTAARLLERPGHPGARYAGLVITRQRPG 967

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  G+   ++T  + +       +P
Sbjct: 968  SAHGT--VFLTLEDESGTLNLIVWP 990


>gi|258511002|ref|YP_003184436.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            subsp. acidocaldarius DSM 446]
 gi|257477728|gb|ACV58047.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            subsp. acidocaldarius DSM 446]
          Length = 1039

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/1033 (30%), Positives = 502/1033 (48%), Gaps = 52/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  HS YS L+GA S+  ++ + AA   PA+A+TD N +    EF + A A G++PI
Sbjct: 2    FVHLHCHSPYSFLDGASSIEALVAQAAAQGMPALALTDRNTIAGQPEFHRLAAAYGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L ++                    +V+L   A G++ L EL++RM++  + +   R
Sbjct: 62   AGAELTMEDGS----------------QLVVLAEHATGFRHLCELLTRMHVDARDRADPR 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +  + L E  +EGL++L+GG  G + RA    +   A + +  ++ +FGDR Y+      
Sbjct: 106  LREADLFE-RSEGLLILSGGLRGFVQRALARRAYGDARRFVERYRNVFGDRFYLEWTADG 164

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRV 248
                 R  + ++ LA    +P VA       S E+   HDVL  +     +         
Sbjct: 165  LPGCARRMRDLLDLAEATGVPAVAATEVRAASPEEVAVHDVLTCIRVGCDLQTPHPERPF 224

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                YL + +E +  F+  P A+  TVEIA RCS +     P+ P + +           
Sbjct: 225  NRLGYLHDEAEAMRRFAQDPRAMARTVEIAERCSPVFPAEGPLFPEYRDASGRGGV---- 280

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L      G   R        G  + + + RL+ E  +I  + ++ YFL+V D +++A+
Sbjct: 281  ELLEQLVWQGARKRY-------GKVSPELQMRLEHEFAIIRDLGYADYFLVVWDIVRYAR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I    GRGS A SV AY L +TD+D L  +LLFERFL+ +R   PD DIDF  DRRD
Sbjct: 334  SRGIRCA-GRGSAADSVVAYCLYLTDVDALNRNLLFERFLSRERAERPDIDIDFASDRRD 392

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV  +YG +RVA++ T+ + +A++A+R+VGR   +P   +D+L K IP        
Sbjct: 393  EVIDYVYRRYGRDRVARVATYQTFRARSAVREVGRVFGIPEELLDQLAKRIPWSTHADEI 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+      R+ +    +   +L +S+++ G  R+  TH  GIVI   PL ++  +   
Sbjct: 453  EEALERVPELRDFQPYRRAFQWMLAVSRQIAGFPRYFGTHTGGIVISGEPLMKVTSLQPS 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
              S   +T ++ + +E  GL+K D L L+T+  ++ +L     R V  D   IP DD  T
Sbjct: 513  A-SGWLITPYDKRLLEDVGLVKLDLLSLRTMAAVEGALRLGTARAV--DYDHIPMDDEAT 569

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKN 666
            +  +    T+G+FQLES   R     +  + +ED++A V+L RPGPI   +   +  R+ 
Sbjct: 570  FASIRRGDTIGVFQLESPAQRALQVRLGAESLEDLVASVALIRPGPIQGNMVDPFLARRR 629

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEM 725
            G E +  +HP ++P+L +T GV+++QEQV++IA  ++G++  EAD LRR M   + + EM
Sbjct: 630  GLEPVSYLHPKLEPILGKTYGVVLFQEQVIEIATAIAGFTPGEADELRRVMSHARSRAEM 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++  ERF+  A + G+    A  +F  +  +A YGF ++HAAA+A  +Y+TA++  H+P 
Sbjct: 690  EQIGERFVQKAVRQGVPLETAKTLFSYVRGYASYGFCEAHAAAFATTAYKTAYLIEHHPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F AA +             C +AR+  ++I+P  +N    D  V   + I      I+ 
Sbjct: 750  SFFAAVLNQLPMGYYPAHVICAEARRRGVRILPVDINESEWDAGVPEPDAIRLGFRLIRS 809

Query: 845  VGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CFGYSRMQLL 902
                 AR ++E       F SL D   R+     +    E L+ AGA D      R +LL
Sbjct: 810  FSERVARALVEERQAFGSFRSLADAVMRLPQA--DALHFERLIRAGAFDRVESRDRRELL 867

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEK-FSVENSSVRFENEQRVL 959
              L      A   EK        +F          D I L +     + + R  +E  VL
Sbjct: 868  WQLPRWL--ALRKEKALA-----LFDTISAPSPAEDAIRLPQSMPPMSLAERIADEYSVL 920

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G   SGH L +Y+  LR  G     E+     G  +++A + +   +  T+ G  + + T
Sbjct: 921  GVGVSGHWLSLYREALRNEGYCTLAEAGEKREGARVKVAGLSIRPHRPPTKSGKTVVFFT 980

Query: 1020 FSEPAKEYEANFF 1032
              +     +A  F
Sbjct: 981  LEDETGIADAVMF 993


>gi|258512318|ref|YP_003185752.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257479044|gb|ACV59363.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 992

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/939 (38%), Positives = 543/939 (57%), Gaps = 42/939 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FVHL VHS++S  E  L + +I+    A + PA+AITDTN ++ AL F + A A GI P
Sbjct: 2   DFVHLHVHSAFSFRESLLRVEDIVRAAKACEMPAVAITDTNAMYGALSFYRLARAEGISP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I+G Q+ + + +      +      T   +V+L    EGY+RL  L +        +   
Sbjct: 62  ILGMQVSLAVGEEEAAPGRAAEWLDT---VVVLAMGMEGYRRLTRLATSARWK---RPVP 115

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-KLFGDRLYVNLQR 188
            + L  L E  ++GL++L GG    +        ++ AE+RLL     +   +L+V +Q 
Sbjct: 116 HVTLRELAE-SSDGLVVLCGGPESRLFDFLARGEAEAAERRLLQVAGAVPVGQLFVEVQD 174

Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H    +R     ++QLA  +++PLVAT++  +L+ ED   H     +A     +      
Sbjct: 175 HGLRREREGLPSLIQLAKRYDVPLVATHDVRYLAREDASWHRAYAQLA----RADAAERF 230

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            T + +   ++EM   F++LPEAL  T EIA  C+  L +H   +PR+  K+     +  
Sbjct: 231 ATDEFHFATKAEMADRFANLPEALGRTAEIAEMCALDLPLHQVRMPRYATKDG----RPA 286

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
           +  LR  A AG   R    +       +          +VI RM ++ YFL+VADFI+ A
Sbjct: 287 DEVLREAARAGAARRYGALSPEVEERLEREL-------DVICRMGYADYFLVVADFIRHA 339

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  I  GPGRGS AGS+ AYAL ITD+DP+R  LLFERFLNP R+S+PD D DF  +RR
Sbjct: 340 HQQGISTGPGRGSAAGSLVAYALRITDVDPIRHKLLFERFLNPARVSLPDIDTDFEFERR 399

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            EVIRYV  KYG +RVAQI TFG+LQA+AALRD GR      + VDRL KL+P    H  
Sbjct: 400 GEVIRYVIEKYGRDRVAQIGTFGTLQARAALRDAGRMTGADPALVDRLAKLVPG-VVHAS 458

Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              A  + + FRE     P   RL E ++++E L  H S HAAG++I   P++  +P+  
Sbjct: 459 LDGAYQESAAFRELVDGSPDARRLFEAAKRIEDLPHHTSIHAAGVIISPEPIADWIPLDL 518

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
               D PVT + M+ +E  G +K DFLGLKTLTL+ + LD + +R  V +D   +   D 
Sbjct: 519 AA-DDTPVTAYPMEDVEALGFVKMDFLGLKTLTLIDRCLDSIRKRTGVTIDWRQVDEGDK 577

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            TY LLT   T G+FQLES+GMR+ L  ++P  ++D+IA++SL RPGP++NI  + + K+
Sbjct: 578 ATYALLTRADTNGVFQLESAGMRRVLRELRPTSLDDVIAVISLNRPGPMENIPAFCDAKH 637

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
           G+  +   HP ++P+L +T GVI+YQEQ+MQIA  ++G+SL+EAD+LRRA+ KK +E +D
Sbjct: 638 GRRPVTYPHPDLEPILADTYGVIVYQEQIMQIASRMAGFSLAEADLLRRAVSKKKREILD 697

Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
           +++ RF+ G  + G S+  A  +++L+ +FADYGFN+SHAAAYAV++++TA+++ H+  +
Sbjct: 698 EERARFVDGCVRRGYSEETAREVYDLIVRFADYGFNRSHAAAYAVLAFRTAYLRAHFLPD 757

Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGV 845
           FLAA +TL M   +KI+ + QDAR+  IQ+ PPSV      + V ++      L +I+ V
Sbjct: 758 FLAALLTLSMGAPDKIRLYEQDARRHGIQVRPPSVLRSERGYTVEEDGSLRAGLISIRNV 817

Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS------RM 899
           G     HI+   ++KPF SL DF  R++ + +NR+ L+SL  AGALD F         R 
Sbjct: 818 GEAAVDHILSLRSEKPFASLVDFLRRIEPRIVNRKALDSLFAAGALDEFFPENASRDVRR 877

Query: 900 QLL-QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
           Q+  ++L   ++  QW          ++F   +   + +
Sbjct: 878 QMYEEALLRAEESRQWAA-------LDLFVEAEAKSASE 909


>gi|190574832|ref|YP_001972677.1| error-prone DNA polymerase [Stenotrophomonas maltophilia K279a]
 gi|190012754|emb|CAQ46383.1| putative DNA polymerase III alpha subunit [Stenotrophomonas
            maltophilia K279a]
          Length = 1036

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1048 (27%), Positives = 463/1048 (44%), Gaps = 90/1048 (8%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             + P +  L   S++S   GA     +  + A     A+AITD  +L   +   Q A A 
Sbjct: 3    SELPGYAELHCLSAFSFQRGASIAEELFARAAGQGYRALAITDECSLAGIVRAWQAAKAH 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+  I+G +  ++                  P + LL +    Y  L +L++        
Sbjct: 63   GVALIVGAEFQVEDG----------------PKLALLCTDQAAYAGLCQLITTCRRR-AA 105

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            K   R     L  +               +   +       A   L   +  F DRL++ 
Sbjct: 106  KGEYRCLREDLLGLPDG------------LLCLWLDRQP--AATDLELLRAGFNDRLWLA 151

Query: 186  LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            ++ H  +D  R   Q+      H L LVA+ +            D L A+ H   V++  
Sbjct: 152  VELHHEHDDARRLQQLQAFGERHRLTLVASGDVHMHVRRRRALQDTLTAIRHRCSVAEAG 211

Query: 245  -RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R     + +L+ R+ +  ++    E L  T+ IA RC F L+      PR +  E  D 
Sbjct: 212  WRLFPNGERHLRPRTALAQLYP--AELLAETLRIAERCHFTLEQLQYTYPRELVPEGHD- 268

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                ++ LR      +  R  +G           R++++ EL +I    ++ YFL V D 
Sbjct: 269  ---PDSWLRELVEEKIPWRWPEGIKDAQ------RKQIEHELALIREKNYASYFLTVHDI 319

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+  +I +  GRGS A S   + L +T+IDP R +LLFERF++ +R   PD DIDF 
Sbjct: 320  VRFARSQDI-LCQGRGSAANSTVCFVLGVTEIDPARSNLLFERFISAERNEPPDIDIDFE 378

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV++YV  +YG ER A      S + ++A+RDV RAL +P  QV+ L   + +  
Sbjct: 379  HERREEVLQYVFKRYGRERAALTAVAISYRGRSAIRDVARALGLPMDQVNELGAAMDHWG 438

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             +      + +  R R      P + RLL ++ +L    RH S H  G VI + PLS LV
Sbjct: 439  GNI----PLPETLRERGFDPDTPLMRRLLALTAELIDFPRHLSQHPGGFVISEHPLSTLV 494

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIP 602
            P+     +D  V Q++   ++  GL+K D L L  LT ++K L  L Q G+    +  IP
Sbjct: 495  PVENAAMADRTVIQWDKDDLDATGLMKVDCLALGMLTAIRKCLAMLKQHGLHEGRMDAIP 554

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             +D  TY ++    T+G+FQ+ES      L  MQP    D++  V++ RPGPI  D +  
Sbjct: 555  DEDGPTYDMICAADTIGVFQIESRAQMAMLPRMQPREFYDLVIEVAIVRPGPIQGDMVHP 614

Query: 661  YNNRK-----------NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            Y  R+           N  +  +   P ++ +   T GV ++QEQVMQ+A   +GY   E
Sbjct: 615  YLERRRILREQGPDALNDPDNPLYP-PQLERVFARTLGVPLFQEQVMQLAVEAAGYEPGE 673

Query: 710  ADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD LRR+M   K +  ++  +E+ ++G  KNG S     ++FE +  F DYGF +SHAA+
Sbjct: 674  ADALRRSMAAWKRRGGLEPHREKLLTGMLKNGFSLEYGEHLFEQIKGFGDYGFPESHAAS 733

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV-- 826
            +A+++Y + W+K H+P  F A+ +  +        +  QDAR+  I+++P  V       
Sbjct: 734  FALLTYASCWLKCHHPAAFTASLINSQPLGFYSPDQLLQDARRHGIRVLPVDVRHSDWDC 793

Query: 827  --DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              DF  G   I   L  + G      + IM   A +PFD + D C R    +  + +L  
Sbjct: 794  TLDFSRGAAAIRLGLRLVDGCNEPDVQAIMRERARRPFDDVGDLCQRTALDRRQQGLL-- 851

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
               AGAL      R +    +  +                 +F   + T   ++ L   S
Sbjct: 852  -ADAGALRGLSGHRHRARWDISGV------------ENRLPLFDQARATAEARVPLPLPS 898

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + + R  G     HP+   +  LR  G     + V    G  +R+A +V  +
Sbjct: 899  AWED---MQADYRSTGTTLGRHPISFLRAQLRSRGCLDAAQLVDHGHGRRVRIAGLVRMR 955

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            Q+ +T  G  + ++T  +      A  +
Sbjct: 956  QRPQTASG--VTFLTLEDETGMVNAVVW 981


>gi|255036108|ref|YP_003086729.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053]
 gi|254948864|gb|ACT93564.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053]
          Length = 1076

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/1035 (25%), Positives = 450/1035 (43%), Gaps = 70/1035 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV S++S L GA     ++++        IAITD N L   +     A   G + I
Sbjct: 3    YTELQVTSNFSFLRGASHPEELVEQAMHFGYTKIAITDRNTLAGIVRAHSAARGKGFEVI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
                               +      PS++   +    Y RL  L+S      + K    
Sbjct: 63   PAA----------------RLDLIDGPSLLAYPTDKPAYARLSALLSLGNRRTE-KGKCD 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            +    + E       +       P+     F      E+ L  ++   G  LY+   R +
Sbjct: 106  LYRRDVYEHAEGMKFVAVA----PVTLNASFEFEPGFERALREYRSELGSELYLAATRSY 161

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRV 248
               D  +  ++ +++   ++PLVATN+  +   E  +  D++  V     +     R   
Sbjct: 162  VESDVKKFFRLSEISKRLDVPLVATNDVHYHHPERRQLQDIVTCVREKCTIYNAGFRLHQ 221

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + YLK+++EM+ IF   P+A+  T EIA  C+F L     + P    +E     +  +
Sbjct: 222  NAERYLKDQAEMLRIFRGYPDAIARTQEIAEACTFSLDTLQYVYP----EEITGGDRSPQ 277

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL   A  G      +    K          ++ EL  +A M ++ YFL V D +++A+
Sbjct: 278  EELTYLAWKGARDFYGEPVPEK------VASAIEHELKFVAEMDYAAYFLTVYDIVRFAR 331

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I +  GRGS A S   + L IT +DP +F LLFERF++  R   PD D+DF  +RR+
Sbjct: 332  ERGI-LCQGRGSAANSTVCFCLGITSVDPTKFDLLFERFISSARNEPPDIDVDFEHERRE 390

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  KYG +R A + T   L  K A+RDV +A+ M    +++L   I         
Sbjct: 391  EVIQYIYQKYGRDRSAIVATVTQLHQKGAVRDVAKAMGMSVDAINKLSSSIWEFTDEWFE 450

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             + I+D    +    +DP + ++ +++++  G  R    H  G VI    ++ L P+   
Sbjct: 451  GKRISD----QGFNASDPHLMKVADLTKQFMGFPRQLGQHTGGFVITQGKITDLCPIINA 506

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
               D    ++N   I+  G +K D L L  LT ++K  D L         L+ IP DD +
Sbjct: 507  RMEDRTNIEWNKDDIDTLGFLKIDVLALGMLTCIRKGFDLLRNHYDKTYTLATIPQDDPK 566

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRK 665
             Y +++   T+G+FQ+ES   +  L  ++P    D++  V++ RPGPI  D +  Y  R+
Sbjct: 567  VYEMISHADTIGVFQIESRAQQSMLPRLKPKNFYDLVIEVAIVRPGPIQGDMVHPYLRRR 626

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEE 724
            NG+E +      ++ +L  T GV ++QEQ M+IA + +G++ +EAD LRR+M   K+   
Sbjct: 627  NGEEPVEYPSKELEDILGRTLGVPLFQEQAMKIAIVAAGFTPAEADKLRRSMATFKLNGL 686

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + + +++ I G +  G ++  A  IF  L  F  YGF +SHAA++A++ Y + WMK +YP
Sbjct: 687  VTQFEKKLIDGMTGRGYTEEYARRIFRQLEGFGSYGFPESHAASFALLVYVSCWMKCYYP 746

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYYSL 839
              F  A +  +     +  +   DAR+  +++ P  VN    D  + +       I    
Sbjct: 747  DVFATALLNSQPMGFYQPAQIVIDARKHGVKVRPVDVNISSWDNTLEEPEGEYRAIRLGF 806

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
              +KG+    A  ++      P+ ++      +    +++  LE L  A A    G  R 
Sbjct: 807  RQVKGLAKKDALALLAGRT-GPYKAIH----LMRDAGVSQEALEKLADADAFRSMGMDRR 861

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFENEQR 957
            Q +           W     + +    FA       F   + L K S+   S     +  
Sbjct: 862  QAM-----------WEASALSERPMGAFAGHKSASEFEAPVELPKLSL---SEHVVQDYM 907

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
                    HP+   +  L    +    +         +R+A +V+ +Q+  T  G  + +
Sbjct: 908  STSLSLKAHPVSFVRQDLVAKRVIKTADLAGLRDKQFVRVAGLVLVRQRPGTAGG--VCF 965

Query: 1018 VTFSEPAKEYEANFF 1032
            +T  + +       F
Sbjct: 966  ITIEDESGVANLVVF 980


>gi|221199957|ref|ZP_03573000.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2M]
 gi|221206888|ref|ZP_03579900.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2]
 gi|221173543|gb|EEE05978.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2]
 gi|221180196|gb|EEE12600.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2M]
          Length = 1065

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1049 (26%), Positives = 460/1049 (43%), Gaps = 68/1049 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S++S L GA     ++ +    +   IAITD  +L  A      A AAG+ 
Sbjct: 3    PAYAELFCRSNFSFLHGASHAEELVARAVKLRYRGIAITDECSLAGAPRMHVAARAAGLP 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG   ++   +       G  P P    +VLL    EGY  L EL+S   +    K +
Sbjct: 63   LIIGSYFEVTPDE----APPGHDPGPGAFGLVLLAQNREGYGNLSELISWRRMA-APKGT 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             ++    L     E   +        I    +   + V + ++  F+  FG+R  + L Q
Sbjct: 118  YKLTPRMLSRPPEEFAHLRGMPDCFAILVPVYPVRADVLDAQVAWFRATFGERARLGLVQ 177

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D  +  ++        + +VA  +            DV+ A+   T VS+     
Sbjct: 178  LQRALDGPQRDEIRAAGARRGVRVVALGDVTMHRRSCKPLQDVMTAIRLGTPVSECGYAL 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++ + +  +FS   + +  T  I   C F L       P  I          
Sbjct: 238  APNAEQHLRSLARIAKLFS--ADEIAQTCAILDACHFELDTLRYEYPDEIVPPG----HT 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L  +  AG   R  QG   K        Q++ +EL++IA++ +  +FL V D +++
Sbjct: 292  PTSYLEQETKAGAIERYPQGVPEK------VEQQIRYELDLIAKLSYEPFFLTVYDIVKY 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  NI +  GRGS A S   Y L IT++DP + +LLFERF++ +R   PD D+DF   R
Sbjct: 346  ARSRNI-LCQGRGSAANSAVCYCLGITEVDPEQSTLLFERFISENRGEPPDIDVDFEHQR 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+++  KYG  R A      + + +  LR+ G+AL +    VDR+ K         
Sbjct: 405  REEVIQHIYEKYGKHRAAIAAAVSTYRPRGVLRETGKALGVDPMLVDRVAKGHRWFDGSR 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              LQ             A P +    E++ +L    RH S H+ G VI    L++LVP+ 
Sbjct: 465  DLLQQFEMVG----LDPATPLIRTWAELAARLLNFPRHLSQHSGGFVISRGKLTRLVPVE 520

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD-----LSL 600
                    V Q++   +E  GL+K D L L  L+ L ++ D + A RG++ D        
Sbjct: 521  NAAMDGRRVIQWDKDDLEALGLLKVDVLALGMLSALHRAFDMITAWRGLQPDGKPFGFDH 580

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI-- 658
            IP  D +TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI     
Sbjct: 581  IPRHDDDTYDMICRADTVGVFQIESRAQMSMLPRLKPREYYDLVIQVSIVRPGPIQGGAV 640

Query: 659  VVYNNRKN---GKE--KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              Y  R+    G+E  ++      +  +L+ T GV I+QEQVMQIA + +G++  EAD L
Sbjct: 641  HPYLKRRRIVAGEEEGEVTYPSDALKAVLERTLGVPIFQEQVMQIAIVAAGFTPDEADAL 700

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM   K K ++ K  ++ ++G  + G ++  A  IFE +  F +YGF +SHAA++A +
Sbjct: 701  RRAMAAWKRKGDLGKYHDQIVNGMLERGYTREFAEQIFEQIKGFGEYGFPESHAASFAKL 760

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-- 830
            +Y ++W+K H P  F+AA +  +        +  QDAR+  + + P  V     +  +  
Sbjct: 761  AYASSWLKCHEPAIFVAALLNSQPMGFYAPAQLVQDARRHGVTVFPVDVTKSNWETSLEA 820

Query: 831  --------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                    GD  +   L+ ++G G   AR I  A A  PF++++    R   ++  R + 
Sbjct: 821  LPGAAPPDGDPAVRLGLSLVRGFGEAAARRIEAARAAGPFENVDALARRAQLER--RDLE 878

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
                        G+ R  L Q++                   ++ A      +++  L  
Sbjct: 879  ALAAANALATLAGHRRDALWQAVAAAPDR-------------DLLAAAPIDEAERPALGA 925

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             S  +  +    +    G   + HP+ + +P LR   +    E      G   R   +V+
Sbjct: 926  PSEADEIL---ADYDTTGLTLNRHPVALLRPALRARRLSSAAELRDRPDGRLARACGIVI 982

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            ++Q   T KG  + ++T  +         
Sbjct: 983  ARQMPGTAKG--VLFMTLEDETGCVNVIV 1009


>gi|284159407|ref|YP_441003.3| error-prone DNA polymerase [Burkholderia thailandensis E264]
 gi|83653819|gb|ABC37882.1| DNA polymerase III, alpha subunit superfamily [Burkholderia
            thailandensis E264]
          Length = 1084

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/1050 (26%), Positives = 444/1050 (42%), Gaps = 69/1050 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++        IAITD  +L  A      A    + 
Sbjct: 21   PDYAELFCRSNFSFLHGASSAEELVERAKKHGYRGIAITDECSLAGAPRMHVAAKGHELP 80

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G   D+   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 81   LVVGAYFDVTPDD----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 135

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             R+    L     E + +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 136  YRLTPRMLAAPPPEFIHLRGVPDCFAILVPTYPARADVLDAQLAWFGALFGERARLGLVQ 195

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D     QV        + +VA  +    +       D + A+     + +     
Sbjct: 196  LQRALDGAHREQVRAAGERRGMRIVALGDVTMHTRSCKPLQDTMTAIRLGMPIGECGHAL 255

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 256  APNAEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDELRYEYPHEIVPAG----HT 309

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L  +  AG   R   G        +  RQR+ FEL +IA +K+  YFL V D +++
Sbjct: 310  PTSYLAQETWAGARRRYPDGV------PEAVRQRIGFELALIADLKYEPYFLTVYDIVEY 363

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A SV  Y L +T+++P + +LLFERF++ +R   PD D+DF   R
Sbjct: 364  ARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFISRERGEPPDIDVDFEHQR 422

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 423  REEVIQYLYGKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 482

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L   A      +     P +    +++ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 483  ALLARFASVGLDPDV----PLIRTWAKLAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVE 538

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 539  NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 598

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 599  HIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 658

Query: 659  -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
               Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 659  VHPYLERRRIAAGEVEGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 718

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM   K K ++ K   R + G  + G S+  A  IFE +  F +YGF +SHAA++A 
Sbjct: 719  LRRAMAAWKRKGDLGKYHRRIVDGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAK 778

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 779  LAYASSWLKCHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSDWEASLE 838

Query: 831  ---------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                     G   +   L+ ++G+    AR I  A A  PF S++         +L RR 
Sbjct: 839  ARPGEAPPDGRPAVRLGLSLVRGMSEEAARRIEAARAAGPFASVD---ELARRARLERRD 895

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE+L  A A      +R   L                      ++ A      + K  L 
Sbjct: 896  LEALAAANAFATLAGNRRDALWQAVAAV------------PQRDLLAGAPIDEAVKPALG 943

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
              +  +       +   +G   + HP+ + +P L    +           G   R   +V
Sbjct: 944  APTEADDVF---ADYHTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGQLARACGLV 1000

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             ++Q   T KG  + +VT  +         
Sbjct: 1001 TARQMPGTAKG--VLFVTLEDETGCVNVIV 1028


>gi|257140342|ref|ZP_05588604.1| error-prone DNA polymerase [Burkholderia thailandensis E264]
          Length = 1072

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/1050 (26%), Positives = 444/1050 (42%), Gaps = 69/1050 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++        IAITD  +L  A      A    + 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAKKHGYRGIAITDECSLAGAPRMHVAAKGHELP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G   D+   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFDVTPDD----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             R+    L     E + +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 124  YRLTPRMLAAPPPEFIHLRGVPDCFAILVPTYPARADVLDAQLAWFGALFGERARLGLVQ 183

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D     QV        + +VA  +    +       D + A+     + +     
Sbjct: 184  LQRALDGAHREQVRAAGERRGMRIVALGDVTMHTRSCKPLQDTMTAIRLGMPIGECGHAL 243

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 244  APNAEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDELRYEYPHEIVPAG----HT 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L  +  AG   R   G        +  RQR+ FEL +IA +K+  YFL V D +++
Sbjct: 298  PTSYLAQETWAGARRRYPDGV------PEAVRQRIGFELALIADLKYEPYFLTVYDIVEY 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A SV  Y L +T+++P + +LLFERF++ +R   PD D+DF   R
Sbjct: 352  ARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFISRERGEPPDIDVDFEHQR 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 411  REEVIQYLYGKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L   A      +     P +    +++ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 471  ALLARFASVGLDPDV----PLIRTWAKLAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVE 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 527  NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 586

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 587  HIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 646

Query: 659  -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
               Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 647  VHPYLERRRIAAGEVEGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 706

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM   K K ++ K   R + G  + G S+  A  IFE +  F +YGF +SHAA++A 
Sbjct: 707  LRRAMAAWKRKGDLGKYHRRIVDGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAK 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 767  LAYASSWLKCHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSDWEASLE 826

Query: 831  ---------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                     G   +   L+ ++G+    AR I  A A  PF S++         +L RR 
Sbjct: 827  ARPGEAPPDGRPAVRLGLSLVRGMSEEAARRIEAARAAGPFASVD---ELARRARLERRD 883

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE+L  A A      +R   L                      ++ A      + K  L 
Sbjct: 884  LEALAAANAFATLAGNRRDALWQAVAAV------------PQRDLLAGAPIDEAVKPALG 931

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
              +  +       +   +G   + HP+ + +P L    +           G   R   +V
Sbjct: 932  APTEADDVF---ADYHTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGQLARACGLV 988

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             ++Q   T KG  + +VT  +         
Sbjct: 989  TARQMPGTAKG--VLFVTLEDETGCVNVIV 1016


>gi|254472134|ref|ZP_05085534.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio
            sp. JE062]
 gi|211958417|gb|EEA93617.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio
            sp. JE062]
          Length = 1117

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/1055 (23%), Positives = 443/1055 (41%), Gaps = 78/1055 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            +   +  L   +++S L GA     I+          + + D N+L   +     A  A 
Sbjct: 2    RGSGYAELCCATNFSFLRGASQPEEIVFTAKNIGLSGLGVCDRNSLAGVVRAHVAADTAE 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ + G +L                     P I+      E Y RL  L++        K
Sbjct: 62   LRMVTGVRLCFVDGS---------------PEILCWPIDREAYGRLTRLLTIGNRR-APK 105

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                + L  L   G   ++         + R     +    +  L     +FG ++ + +
Sbjct: 106  GECHLRLEDLLAQGPGFVVA------PIMSRLENRTNLSALKTTLEALVAVFGQQVRLAV 159

Query: 187  Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
               +   DR    Q+++LA    L ++A N+ L+         D++  +     +    R
Sbjct: 160  ALTYGASDRRFLLQMMELADACGLNILAVNDVLYHEAARRPLQDIVSCIRLHETLESAGR 219

Query: 246  -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  + YLK   EM  +F D PEAL  ++ I    +F L       P    +E     
Sbjct: 220  KLGANAERYLKTYEEMEQLFHDCPEALTESLRILDEINFSLSELRYDYP----QEEIASG 275

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               + EL   A  G ++R  +G        +  R+ + +ELN+I  + ++ YFL V D +
Sbjct: 276  LSPQQELARLAEEGAQIRYPEGV------PESVRESIAYELNLIEELDYAPYFLTVHDIV 329

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+  NI +  GRGS A SV  + + IT++DP R  LLFERF++P+R   PD D+DF  
Sbjct: 330  RFARSRNI-LCQGRGSAANSVVCFCIGITEVDPKRAGLLFERFISPERKEPPDIDVDFEH 388

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI+Y+  KYG ER     T  + ++++ALR+V +   +       L   I    +
Sbjct: 389  ERREEVIQYIYQKYGRERAGLAATVITYRSRSALREVAKVFGLSEDAAGALSGTIWGRSS 448

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               + + + D          +  V ++L+ +++L G  RH S H  G VI    L ++VP
Sbjct: 449  GGGNAEQVRD----AGLDPQEAVVAQVLKYAKELIGFPRHLSQHVGGFVITQGRLDEVVP 504

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +      D    +++   +E  GL+K D L L  LT ++K+L  L +       ++ +P 
Sbjct: 505  VMNAAMEDRTTIEWDKDDLESLGLLKIDVLALGMLTAIRKALVLLRKGYNQDWTIASLPE 564

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            ++ E Y ++    TLG+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y
Sbjct: 565  EEAEVYDMICRADTLGVFQIESRAQMSMLPRLRPRSFYDLVIEVAIVRPGPIQGDMVHPY 624

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R+  KE +      +  +L +T GV ++QEQ M+IA + +G++  EAD LRRAM   +
Sbjct: 625  LRRRQKKEAVNFPKEELRDVLGKTLGVPLFQEQAMKIAIVAAGFTPGEADRLRRAMATFR 684

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                +   +++ ++G    G  K  A   F+ +  F +YGF +SHAA++A++ Y + W+K
Sbjct: 685  RVGTIKTFQDKMVNGMVARGYEKDFAERCFKQIEGFGEYGFPESHAASFALLVYASCWLK 744

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-------- 832
              YP  F AA +  +        +  +DAR+  + +    +N    D  +          
Sbjct: 745  ARYPDVFCAAMLNSQPLGFYAPAQLVRDAREHGVDVREVDINLSSWDAVLEPDAQAWRRL 804

Query: 833  --------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                          + +     ++KG+       ++       +DS+ D   R     L+
Sbjct: 805  HPRHKEMQGTIKSDHAVRLGFRSVKGLAEADMEKLVAVRGRG-YDSVRDLWLRT---GLS 860

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            R V+  L  A A    G  R   L +       AQ +E     +   +F           
Sbjct: 861  RSVIAKLAEADAFRSLGLDRRAALWA-------AQGLEAGGAAERLPLFDQANLHELRPE 913

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
                            + + L     GHP+   +  L +  +   ++      G  + +A
Sbjct: 914  PDVHLPPMLPGEHVMADYQSLTLSLKGHPVGFVRKSLAQSCVILCDDLKDLRAGRKVSVA 973

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +V+ +Q+  + KG  + ++T  + +       +P
Sbjct: 974  GLVLVRQRPGSAKG--VIFMTLEDESGIANVIVWP 1006


>gi|319892748|ref|YP_004149623.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
            HKU10-03]
 gi|317162444|gb|ADV05987.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
            HKU10-03]
          Length = 1063

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1026 (33%), Positives = 533/1026 (51%), Gaps = 86/1026 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H++Y LL  ++++   + +       AIAITD N ++   +F       GI+P++
Sbjct: 3    AHLNIHTAYDLLNSSITIEGAVQRTIELGYSAIAITDLNVMYGVPQFYDACIQHGIKPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +  Q N+                V++    EG Q L +L S + +          
Sbjct: 63   GMTVYLTDQLNVLEA-------------VVIAKNNEGLQNLFKLSSDIKVNR-------- 101

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                                   I     +    +    ++ FK++     + + +   G
Sbjct: 102  -----------------------IKHVSIYEKKDLFNDTVVIFKQMTNQEKHWHEEMPDG 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
               + + Q    A   ELP V    + +   ED  A  VL A+  +T V+  D    TP 
Sbjct: 139  VTCFTDHQS---AEDCELPKVLMQAAYYEKAEDKNALKVLHAIRDNTKVNLVD-SHETPT 194

Query: 252  HYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             ++ +   +    S   EA L  T EIA  C   L+ H  +LP F+  +          E
Sbjct: 195  EHIYDVDALYD--SQFAEAWLARTDEIANMCDAKLEYHQALLPEFVTPDGSSANAYLWAE 252

Query: 311  L-RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            L R  A  GL                 YR+RL +E +VI +M ++ YFLIV+D I++AK 
Sbjct: 253  LERALADFGLTE-------------ARYRKRLKYEYDVITQMGYADYFLIVSDLIRYAKS 299

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N + VGPGRGS AGS+ +Y L IT IDPL++ LLFERFLNP+R++MPD DIDF   +R++
Sbjct: 300  NGVMVGPGRGSSAGSLVSYLLNITTIDPLQYDLLFERFLNPERVTMPDIDIDFEDTQREK 359

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI YVQ KYG  RVA I+TFG L AKA  RDVGR +    + +    KLIP+     V+L
Sbjct: 360  VIHYVQQKYGDYRVAGIVTFGHLLAKAVARDVGRVMGFDETTLSEASKLIPSKLG--VTL 417

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                 + RF+     +   +R  E  +KLEGL R+ STHAAG+++ D+PL Q +P+    
Sbjct: 418  DEAYKEERFKAFVHRNHRHERWFEYCKKLEGLPRNTSTHAAGVIVNDQPLYQSIPLTEGE 477

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET 608
                 +TQ+ M   E+ GL+K DFLGL+ LT++ + +  +A+   V +D+  IPFDD   
Sbjct: 478  TG--LLTQWTMTEAERIGLLKIDFLGLRNLTIIHQIIKQVARDLKVDIDVEQIPFDDVHV 535

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL+   T GIFQLES G+R+ L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++  
Sbjct: 536  FELLSRGDTTGIFQLESEGVRRVLQKLQPEHFEDIVAVTSLYRPGPMEEIPTYIRRRHDP 595

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             ++  +HP + P+LK T GVIIYQEQ+MQIA   +G+S  EAD+LRRAM KK +E ++ +
Sbjct: 596  SQVTYLHPDLAPILKRTYGVIIYQEQIMQIASQFAGFSYGEADILRRAMSKKNREVLENE 655

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ FI GA + G ++T++  IF+L+ KFADYGF ++HA +Y+ I+Y   ++K HYP  F 
Sbjct: 656  RQHFIDGAKEKGYAETLSGQIFDLILKFADYGFPRAHAVSYSKIAYIMTYLKVHYPAYFY 715

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A  ++  + N  K     Q+A+Q +I I  P +N     +      +Y SL AIKGVG  
Sbjct: 716  ANILSNVIGNDTKTNMMIQEAKQQHITIHGPHINKSQWRYVATQEGVYISLGAIKGVGYQ 775

Query: 849  TARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            T + IM E     P+    DFC+R+  +  +RR LE+L+  GA+DCFG +R  LLQS+D 
Sbjct: 776  TVQTIMNERREQGPYKDFFDFCNRIPGRLRSRRTLEALILTGAMDCFGKNRATLLQSIDK 835

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +            +   ++ A      + K    +     S    + E++ LGFY + HP
Sbjct: 836  VSDT-------DVSIDTDLLA---SVATIKQEYAETEEMPSQQLSDFEKQYLGFYVTAHP 885

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            ++      ++    G  +  A +    I +   + + +  +T++G ++ +V  ++     
Sbjct: 886  VE---KAFKQKQYLGIFQLQAHVTHQPILV--TLDAVRVIRTKQGQQMAFVELNDGITTM 940

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 941  DGVIFP 946


>gi|254500463|ref|ZP_05112614.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia
            alexandrii DFL-11]
 gi|222436534|gb|EEE43213.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia
            alexandrii DFL-11]
          Length = 1130

 Score =  789 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/1059 (24%), Positives = 462/1059 (43%), Gaps = 84/1059 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P++  L   +++S L GA     ++ + A  Q  A+ I D N++   +     A  
Sbjct: 7    ITEPPAYAELCAATNFSFLHGASHPEELVLQGAHLQLAALGICDRNSMAGVVRAHMAAKE 66

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++ + GC+L                     P ++        Y  L  L++    +  
Sbjct: 67   TGLKFVPGCRLAF---------------LDGKPDLLYWPKDRGAYGTLTRLLT----IGN 107

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +     C   L ++      +L  GS   +             K L   K  F   L +
Sbjct: 108  RRAEKGACHLTLDDVS-----LLCPGSPAALILPPGLPDPDPVLKVLEKLKSRFEGTLRL 162

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +  HR   DR R +    + +T  +P++A N++L+ + +     DVL  +     +   
Sbjct: 163  AVALHRKAEDRRRLALARNITHTAGVPMLAINDTLYHAPDRRPLQDVLTCIRLHERLETA 222

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  +   + +LK   E++ +F   P  L  +++I +   F L       P     E   
Sbjct: 223  GRQLQQNAERHLKPAEEILRLFESDPAPLHESLKILQEVQFSLDDLRYEYPEEPAGE--- 279

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 + EL    + G + R  +G   K       R  +D EL ++A + ++ YFL V D
Sbjct: 280  -SASPQAELERLTLEGAKRRYPEGVPNK------IRSTIDHELKLVADLDYAPYFLTVYD 332

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+   I +  GRGS A SV  + L IT++DP R  LLFERF++P+R   PD D+DF
Sbjct: 333  IVRFARTRGI-LCQGRGSAANSVVCFCLGITEVDPTRADLLFERFISPERREPPDIDVDF 391

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+EVI+Y+  KYG ER     T  + ++++ALR+VG+   +    +  L   +   
Sbjct: 392  EHERREEVIQYIYAKYGRERAGLAATVITYRSRSALREVGKVFGLSEDAIASLAGTVWGR 451

Query: 483  PAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +      A  ++++ REA L  +DP + ++LE+++ L G  RH S H  G VI    L 
Sbjct: 452  AS------AGTEEAQVREAGLDPSDPLITQMLELARTLIGFPRHLSQHVGGFVITRGRLD 505

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
            +++P+      D  V +++   ++  G++K D L L  LT ++K+L  L++     + +S
Sbjct: 506  EVIPIQNAAMEDRTVVEWDKDDLDALGILKIDILALGMLTAIRKALTMLSENYGQDLTIS 565

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DN 657
             IP ++   Y +L    ++G+FQ+ES      L  ++P+   D++  V++ RPGPI  D 
Sbjct: 566  TIPAEEKPVYDMLCRADSVGVFQVESRAQMTMLPRLRPEKFYDLVIEVAIVRPGPIQGDM 625

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +  Y  R+ GKE++      ++ +L +T GV ++QEQ M+IA + +G++  EAD LRRAM
Sbjct: 626  VHPYLRRRQGKERVSYPSKELEAVLGKTMGVPLFQEQAMKIAIVAAGFTPGEADKLRRAM 685

Query: 718  GK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
               +    +   + + I G +KNG  +  A   F  +  F +YGF +SHAA++A++ Y +
Sbjct: 686  ATFRRVGTIGTFQTKMIEGMAKNGYDRDFAERCFRQIEGFGEYGFPESHAASFALLVYAS 745

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD---- 832
            +W+K +YP  F AA +  +        +  +DAR+  + +    +N    D K+      
Sbjct: 746  SWIKAYYPDVFCAALLNSQPMGFYAPGQLVRDAREHGVDVREVDINLSDWDAKLEPGWQA 805

Query: 833  ------------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                              + +      +KG+       ++    D  +DS+ D   R   
Sbjct: 806  ARHLHPRHREMKEIVRTDHAVRLGFRTVKGLKQDDMDKLIVHRGDG-YDSIRDLWLR--- 861

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
              L+R V+  L  A A    G  R   + +       AQ +E         +F       
Sbjct: 862  SGLSRPVILRLAEADAFRSLGLDRRAAVWA-------AQGLEAGNQRDRLPLFDVADFGD 914

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
                                + + L      HP+   +P L    +          +G  
Sbjct: 915  LRPEPDADLPPMLPGAHVMADYQSLSLSLKAHPVAFARPALAGQRVVPCMNLPDVRQGRQ 974

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +A +V+ +Q+  + KG  + ++T  +         +P
Sbjct: 975  VSVAGLVLVRQRPGSAKG--VIFLTLEDEGGIANIIVWP 1011


>gi|282854988|ref|ZP_06264320.1| error-prone DNA polymerase [Propionibacterium acnes J139]
 gi|282581576|gb|EFB86961.1| error-prone DNA polymerase [Propionibacterium acnes J139]
          Length = 1134

 Score =  789 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/1076 (26%), Positives = 469/1076 (43%), Gaps = 105/1076 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HSSYS L+GA S  +++ + A      +A+TD + L+  +  ++ A A G+  
Sbjct: 56   PYAELHCHSSYSFLDGASSPEDLVIRAAELGLSGLALTDHDGLYGVVRMAEAAEACGLST 115

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128
            IIG +L I + +      Q     P    +++L +  EGY+RL E ++  YL++ G K  
Sbjct: 116  IIGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTDAYLVEGGHKGR 170

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
                L  L E+      +LTG   G + +       Q AE  L     LF  D + V L 
Sbjct: 171  PVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVRGMPQ-AEAELRRLVDLFGIDNVLVELT 229

Query: 188  RHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
             HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV     + + D  
Sbjct: 230  DHRAPTDSRDNDLLAELASRHSLSTVATTAAHYAGGEQFELACALSAVRARRSLDEMDGW 289

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                P   L++ +EM  +FS   +A++NTV +A R +F L     + PR  +++  D   
Sbjct: 290  LPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHL---KSVRPRLPDQKVPD-GH 345

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR+    G         +AK         RL  EL++I    F+GYFLIV+D  +
Sbjct: 346  TPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDRGFAGYFLIVSDIAE 397

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  R   PD D+DF   
Sbjct: 398  FAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREEEPDIDVDFDAR 456

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D   + +      
Sbjct: 457  RREEVIQYVYAKYGRRNAAQVADVITYRPRSAIRDMAKALGYSQGQQDAWSRQMERRSVP 516

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            P+      D              D +  ++Q++ GL RH   H+AG+V+   P+ ++ P+
Sbjct: 517  PLPHD--PDGPEIP---------DDVTTLAQQVMGLPRHLGIHSAGMVLTREPVGRICPI 565

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                     V Q++ +     GL+KFD LGL  L+ L  S D ++Q       L+ IP +
Sbjct: 566  EPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCGRFWTLASIPRN 625

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYN 662
            +   Y +L    ++G+FQ+ES      L  ++P C  D+   + L RPGP+       Y 
Sbjct: 626  EPGVYDMLCRGDSIGVFQVESRAQIGVLPRLRPRCFYDLAVEIGLIRPGPVQGGAVHPYI 685

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKI 721
             R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   ++++AD+LRRAM  K+ 
Sbjct: 686  RRRTGAEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTVADADLLRRAMGSKRG 745

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E ++  + +   G + NGI    A  I+  +  FA++GF +SHA ++A + Y +AW+K 
Sbjct: 746  VERINSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFAGLVYTSAWIKL 805

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------- 831
            HYP  FLAA +  +            DAR+  +    P V    V   +           
Sbjct: 806  HYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSLVGADLELLDACCEELG 865

Query: 832  ------------------------------------DNRIYYSLAAIKGVGTTTARHIME 855
                                                   +   L+ + G+   TA  I+E
Sbjct: 866  SEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSGINIETATRIVE 925

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
                + F SL+D   RVD        +E+L  AGA D    SR   L  +          
Sbjct: 926  ERERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQI---------- 972

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
                     N     +                      ++ R  G   + HP+   +  L
Sbjct: 973  ------GQINGVGPGQLDVQVVTQPPLLPEPTQMELLGDDLRATGISTADHPVRQVRDAL 1026

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             + G+   +       G  + +A +V  +Q+  T  G+   ++   +         
Sbjct: 1027 NRRGVVRVDRLDGVESGRRVEVAGVVTHRQRPGTAGGAT--FLNLEDETGLLNVIV 1080


>gi|33596275|ref|NP_883918.1| error-prone DNA polymerase [Bordetella parapertussis 12822]
 gi|71151815|sp|Q7W9W1|DNAE2_BORPA RecName: Full=Error-prone DNA polymerase
 gi|33566044|emb|CAE36941.1| putative DNA polymerase III alpha chain [Bordetella parapertussis]
          Length = 1052

 Score =  789 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/1035 (24%), Positives = 431/1035 (41%), Gaps = 61/1035 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L+GA     ++ +       A+A+TD  +L   +    +A    + 
Sbjct: 6    PGYAELHCQSNFSFLQGASHPEELVTRAGELGYAALALTDECSLAGVVRAHVEAREQKLP 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    +                     + LL    EGY  L EL++        K  
Sbjct: 66   LIIGSSFTLQAG-----------ADAPPLDLTLLAQNREGYGNLAELITLGRGR-AAKGQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  + ++    +   +        I       +++   ++          R ++ L  
Sbjct: 114  YLLTPADIEAPAGDNAHLRGMPDCLAILAPPPGLAAERLAEQARWLAAQCPGRAWIGLTL 173

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
             H   D    + V   A+   LP+VA   +          HD L A+     V Q     
Sbjct: 174  LHHCRDDLHRAAVEHAAHASGLPIVALGQAQMHRRSRKPLHDTLAAIRTGRSVGQCGYDL 233

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  + S++    +AL  T+ IARRC+F L       P  I          
Sbjct: 234  AANAERHLRSRLRLASLYP--AQALAQTLAIARRCTFSLDELQYEYPDEIVPAG----HT 287

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR +   G   R  +G             +++ EL +I  +++  YFL V D + +
Sbjct: 288  PASYLRQQTYLGARQRFPEGM------TPAVAAQVEKELALINELRYEAYFLTVYDIVGY 341

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I +  GRGS A S   Y L IT +DP R + LFERF++ +R   PD D+DF   R
Sbjct: 342  ARSQGI-LCQGRGSAANSAVCYCLGITAVDPARGNTLFERFISKERNEPPDIDVDFEHQR 400

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG +R A      S + ++ LRD GRAL +    +D + +         
Sbjct: 401  REEVIQYIYEKYGRQRAALTAVVISYRPRSVLRDTGRALGVDNGIIDAVARAHQWWDGKK 460

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L+++A          A     +  E+++ L G  RH S H  G VI    LS+LVP+ 
Sbjct: 461  EMLRSLAACG----LDPASRVARQWAELAETLMGFPRHLSQHPGGFVISRGKLSRLVPIE 516

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                    V Q++   ++   L+K D L L  L++L+++L    QR    + L  IP DD
Sbjct: 517  NAAMPGRSVVQWDKDDLDALRLLKVDVLALGMLSVLRRALALAGQRRGRPLALHEIPPDD 576

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663
              TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI    +  Y  
Sbjct: 577  DATYDMICAADTIGVFQIESRAQMSMLPRLRPRQYYDLVVQVAIVRPGPIQGGMVPPYLR 636

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+ G+E I    P +   L  T GV I+QEQVMQIA   +G++  EAD LRR+M   + K
Sbjct: 637  RRQGREDITYPGPAVRKALARTLGVPIFQEQVMQIAVDAAGFTPGEADALRRSMAAWRRK 696

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +DK + + + G      +   A  +F  +  F +YGF +SHAA++A+++Y ++W+K H
Sbjct: 697  GGVDKFRAQLVGGLLARNYTADFAQALFRQIEGFGEYGFPESHAASFALLAYASSWLKCH 756

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDNRIY 836
             P  FLAA +  +        +  QDAR+  ++++P  V     +  +          + 
Sbjct: 757  EPEAFLAALLNSQPMGFYAPAQLVQDARRHGVRVLPADVLYSGWEASLQDAPGAARPAVR 816

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  +KG+   +AR I +A   +PF    D   R    +     L +          G+
Sbjct: 817  LGLNLVKGLREDSARAIEQARVRRPFADTADMARRAGLPRQALDALAAADALRT--LAGH 874

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R+                +   + +  ++        ++   L   S   +      + 
Sbjct: 875  RRL-------------ASWQAAASAQSRDLLREAVIVETETPALPAPSEGQT---VAADY 918

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            R +G     HPL + +P L     +              R   +V  +Q+ +T KG+   
Sbjct: 919  RSVGLTLGRHPLALLRPQLAARNFQTAAVLNTYPNRRLARACGIVTVRQRPQTAKGT--I 976

Query: 1017 WVTFSEPAKEYEANF 1031
            +VT  +      A  
Sbjct: 977  FVTLEDETGPINAVV 991


>gi|311694224|gb|ADP97097.1| error-prone DNA polymerase [marine bacterium HP15]
          Length = 1039

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/1031 (25%), Positives = 454/1031 (44%), Gaps = 61/1031 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+++ L GA   + + ++       A+AITD  ++            + ++ I
Sbjct: 6    YAELFCFSNFTFLTGASHPHELAERAHELGYTALAITDACSVAGIPRAWAALAESPVKLI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G   ++                 T P  +LL  T +GY +L +L++      + K   +
Sbjct: 66   TGSWFELS----------DAPAGATQPRFILLARTRKGYGQLCQLITTGRRRAE-KGHYQ 114

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +    ++       + L    S           S  A        +LF  R+++   R  
Sbjct: 115  LFYRDIETHTLNDCLCLWLPPS------PTEADSDQALACGEWLARLFDPRIWIAAARTL 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
               +  R +++  LA    +P+ A       S E     DVL A+ + T +         
Sbjct: 169  ESGEEQRLARIHWLADQLRIPVAAVGEVHMHSRERQPLQDVLTALRNHTNLENAGHCLFQ 228

Query: 249  TPDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              + YL+    +  +F   PEA L  T+ IA +C+F         P  +  E +      
Sbjct: 229  NGERYLRPLPVLQRLF---PEAWLHETLAIASQCTFEPGSLRYEYPPDLVPEGE----TP 281

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+     G   R   G           +  +  EL +I+ M +  YFL + D + +A
Sbjct: 282  AGYLKRLTREGERRRYPDGT------PLQVQSLIRKELGLISEMNYEHYFLTIHDIVDFA 335

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A S   Y L IT+++P R  LLFERF++ DR   PD D+DF  +RR
Sbjct: 336  RSRGI-LCQGRGSAANSAVCYCLGITEVNPARVELLFERFISKDRNEPPDIDVDFEHERR 394

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  +Y  ER A   T    + K+A+RDVG+AL    + V++L + I        
Sbjct: 395  EEVIQYIYRRYTRERAALAATVIRYRPKSAIRDVGKALGFDPALVEQLLEGIDWRDKATN 454

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              Q I D    R  ++AD    +   +   L G  RH S H  G VI   PL++LVP+  
Sbjct: 455  WRQQILDKKITRNPQVAD----QFFTLVNTLLGFPRHLSQHVGGFVISAGPLAELVPVEN 510

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
               +D  V Q++   +E  GL+K D L L  L+ ++K+L+ ++ ++G    +  IP +D 
Sbjct: 511  AAMTDRTVIQWDKDDLESLGLMKVDVLALGMLSAIRKALELISDEKGQPFRIQDIPQEDR 570

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNR 664
            +TY +L T  ++G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  Y  R
Sbjct: 571  DTYAMLQTGDSIGVFQVESRAQINMLPRLKPETYYDLVIEVAIVRPGPIQGDMVHPYLRR 630

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKE 723
            K+G E +   +  +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM   K   
Sbjct: 631  KHGLEPVDYPNDAVRKVLERTLGVPIFQEQVIKLAMVAAGFSAGEADQLRRAMAAWKSHG 690

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            ++   +E+ ++G  + G     A  +++ +  F  YGF +SHAA++A++ Y +AW+K HY
Sbjct: 691  DLTPFREKLVTGMLERGHDADFAERLYQQICGFGGYGFPESHAASFALLVYVSAWIKRHY 750

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIYYSLAA 841
            P  F  A +  +        +  QDAR+ N+ ++PP VN    D  +   +  +   L  
Sbjct: 751  PAAFYCALLNSQPMGFYSPSQLVQDARRHNVTVLPPDVNASQWDHTLQGENRHLRLGLRI 810

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            I+G+    A  I +    + + S  +         LN+R +E L  A A+  F  +R Q 
Sbjct: 811  IQGLSVYGAERIHQNRPAEGYRSASELRR---LAALNQRDMELLAGANAMPGFTANRHQA 867

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               L +              +   +FA E          E+    +       +    G 
Sbjct: 868  YWQLLDH------------EQPTELFAEETAVDYQPDYCEQLPEPSEGQNVLADYASQGL 915

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
                HPL + +           E+  +T  G  +++A +V  +Q+  +  G  + +VT  
Sbjct: 916  TLQRHPLALLRDQGHLKFCLSAEQLKSTKAGIPVQVAGLVTGRQRPGSASG--VTFVTLE 973

Query: 1022 EPAKEYEANFF 1032
            +         +
Sbjct: 974  DETGNVNVVVW 984


>gi|33602064|ref|NP_889624.1| error-prone DNA polymerase [Bordetella bronchiseptica RB50]
 gi|71151814|sp|Q7WHW8|DNAE2_BORBR RecName: Full=Error-prone DNA polymerase
 gi|33576502|emb|CAE33580.1| putative DNA polymerase III alpha chain [Bordetella bronchiseptica
            RB50]
          Length = 1052

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/1035 (24%), Positives = 431/1035 (41%), Gaps = 61/1035 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L+GA     ++ +       A+A+TD  +L   +    +A    + 
Sbjct: 6    PGYAELHCQSNFSFLQGASHPEELVTRAGELGYAALALTDECSLAGVVRAHVEAREQKLP 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    +                     + LL    EGY  L EL++        K  
Sbjct: 66   LIIGSSFTLQAG-----------ADAPPLDLTLLAQNREGYGNLAELITLGRGR-AAKGQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  + ++    +   +        I       +++   ++          R ++ L  
Sbjct: 114  YLLTPADIEAPAGDNAHLRGMPDCLAILAPPPGLAAERLAEQARWLAAQCPGRAWIGLTL 173

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
             H   D    + V   A+   LP+VA   +          HD L A+     V Q     
Sbjct: 174  LHHCRDDLHRAAVEHAAHASGLPIVALGQAQMHRRSRKPLHDTLAAIRTGRSVGQCGYDL 233

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  + S++    +AL  T+ IARRC+F L       P  I          
Sbjct: 234  AANAERHLRSRLRLASLYP--AQALAQTLAIARRCTFSLDELQYEYPDEIVPAG----HT 287

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR +   G   R  +G             +++ EL +I  +++  YFL V D + +
Sbjct: 288  PASYLRQQTYLGARQRFPEGM------TPAVAAQVEKELALINELRYEAYFLTVYDIVGY 341

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I +  GRGS A S   Y L IT +DP R + LFERF++ +R   PD D+DF   R
Sbjct: 342  ARSQGI-LCQGRGSAANSAVCYCLGITAVDPARGNTLFERFISKERNEPPDIDVDFEHQR 400

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG +R A      S + ++ LRD GRAL +    +D + +         
Sbjct: 401  REEVIQYIYEKYGRQRAALTAVVISYRPRSVLRDTGRALGVDNGIIDAVARAHQWWDGKK 460

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L+++A          A     +  E+++ L G  RH S H  G VI    LS+LVP+ 
Sbjct: 461  EMLRSLAACG----LDPASRVARQWAELAETLMGFPRHLSQHPGGFVISRGKLSRLVPIE 516

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                    V Q++   ++   L+K D L L  L++L+++L    QR    + L  IP DD
Sbjct: 517  NAAMPGRSVVQWDKDDLDALRLLKVDVLALGMLSVLRRALALAGQRRGRPLALHEIPPDD 576

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
              TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +   Y  
Sbjct: 577  DATYDMICAADTIGVFQIESRAQMSMLPRLRPRQYYDLVVQVAIVRPGPIQGGMVHPYLR 636

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+ G+E I    P +   L  T GV I+QEQVMQIA   +G++  EAD LRR+M   + K
Sbjct: 637  RRQGREDITYPGPAVRKALARTLGVPIFQEQVMQIAVDAAGFTPGEADALRRSMAAWRRK 696

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +DK + + + G      +   A  +F  +  F +YGF +SHAA++A+++Y ++W+K H
Sbjct: 697  GGVDKFRAQLVGGLLARNYTADFAQALFRQIEGFGEYGFPESHAASFALLAYASSWLKCH 756

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDNRIY 836
             P  FLAA +  +        +  QDAR+  ++++P  V     +  +          + 
Sbjct: 757  EPEAFLAALLNSQPMGFYAPAQLVQDARRHGVRVLPADVLYSGWEASLQDAPGAARPAVR 816

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  +KG+   +AR I +A   +PF    D   R    +     L +          G+
Sbjct: 817  LGLNLVKGLREDSARAIEQARVRRPFADTADMARRAGLPRQALDALAAADALRT--LAGH 874

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R+                +   + +  ++        ++   L   S   +      + 
Sbjct: 875  RRL-------------ASWQAAASAQSRDLLREAVIVETETPALPAPSEGQT---VAADY 918

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            R +G     HPL + +P L     +              R   +V  +Q+ +T KG+   
Sbjct: 919  RSVGLTLGRHPLALLRPQLAARNFQTAAVLNTYPNRRLARACGIVTVRQRPQTAKGT--I 976

Query: 1017 WVTFSEPAKEYEANF 1031
            +VT  +      A  
Sbjct: 977  FVTLEDETGPINAVV 991


>gi|161523657|ref|YP_001578669.1| error-prone DNA polymerase [Burkholderia multivorans ATCC 17616]
 gi|189351575|ref|YP_001947203.1| error-prone DNA polymerase [Burkholderia multivorans ATCC 17616]
 gi|160341086|gb|ABX14172.1| DNA polymerase III, alpha subunit [Burkholderia multivorans ATCC
            17616]
 gi|189335597|dbj|BAG44667.1| DNA polymerase III alpha subunit [Burkholderia multivorans ATCC
            17616]
          Length = 1071

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/1049 (26%), Positives = 459/1049 (43%), Gaps = 68/1049 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S++S L GA     ++ +        IAITD  +L  A      A AAG+ 
Sbjct: 9    PAYAELFCRSNFSFLHGASHAEELVARAVKLGYRGIAITDECSLAGAPRMHVAARAAGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG   ++   +       G  P P    +VLL    EGY  L EL+S   +    K +
Sbjct: 69   LIIGSYFEVTPDE----APPGHDPGPGAFGLVLLAQNREGYGNLSELISWRRMA-APKGT 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             ++    L     E   +        I    +   + V + ++  F+  FG+R  + L Q
Sbjct: 124  YQLTPRMLSRPPEEFAHLRGMPDCFAILVPVYPVRADVLDAQVAWFRTTFGERARLGLVQ 183

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D  +  ++        + +VA  +            DV+ A+     VS+     
Sbjct: 184  LQRALDGPQRDEIRAAGARRGVRVVALGDVTMHKRSCKPLQDVMTAIRLGMPVSECGYAL 243

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R+ + ++FS   + +  T  I   C F L       P  I          
Sbjct: 244  APNAEQHLRSRARIATLFS--ADEIAQTCAILDACHFELDTLRYEYPDEIVPPG----HT 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L  +  AG   R  +G   K        Q++ +EL +IA++ +  +FL V D +++
Sbjct: 298  PTSYLEQETRAGAAERYPKGVPEK------VEQQIRYELALIAKLSYEPFFLTVYDIVKY 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  NI +  GRGS A S   Y L IT++DP + +LLFERF++ +R   PD D+DF   R
Sbjct: 352  ARSQNI-LCQGRGSAANSAVCYCLGITEVDPEQSTLLFERFISENRGEPPDIDVDFEHQR 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+++  KYG  R A      + + +  LR+ G+AL +    VDR+ K         
Sbjct: 411  REEVIQHIYEKYGKHRAAIAAAVSTYRPRGVLRETGKALGVDPMLVDRVAKGHRWFDGSR 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              LQ             A P +    E++ +L    RH S H+ G VI    L++LVP+ 
Sbjct: 471  DLLQQFEMVG----LDPATPLIRTWAELAARLLNFPRHLSQHSGGFVISRGKLTRLVPVE 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD-----LSL 600
                    V Q++   +E  GL+K D L L  L+ L ++ D + A RG++ D        
Sbjct: 527  NAAMDGRRVIQWDKDDLEALGLLKVDVLALGMLSALHRAFDMITAWRGLQPDGKPFGFDH 586

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI-- 658
            IP  D +TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI     
Sbjct: 587  IPRHDDDTYDMICRADTVGVFQIESRAQMSMLPRLKPREYYDLVIQVSIVRPGPIQGGAV 646

Query: 659  VVYNNRKN---GKE--KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              Y  R+    G+E  ++      +  +L+ T GV I+QEQVMQIA + +G++  EAD L
Sbjct: 647  HPYLKRRRIVAGEEEGEVTYPSDALKAVLERTLGVPIFQEQVMQIAIVAAGFTPDEADAL 706

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM   K K ++ K  ++ ++G  + G ++  A  IFE +  F +YGF +SHAA++A +
Sbjct: 707  RRAMAAWKRKGDLGKYHDQIVNGMLERGYTREFAEQIFEQIKGFGEYGFPESHAASFAKL 766

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-- 830
            +Y ++W+K H P  F+AA +  +        +  QDAR+  + + P  V     +  +  
Sbjct: 767  AYASSWLKCHEPAIFVAALLNSQPMGFYAPAQLVQDARRHGVTVFPVDVTKSNWETSLEA 826

Query: 831  --------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                    GD  +   L+ ++G G   AR I  A A  PF++++       ++   R + 
Sbjct: 827  LPGAAPPEGDPAVRLGLSLVRGFGEAAARRIEAARAAGPFENVD--ALARRARLERRDLE 884

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
                        G+ R  L Q++                   ++ A      +++  L  
Sbjct: 885  ALAAANALATLAGHRRDALWQAVAAAPDR-------------DLLAAASIDEAERPALGA 931

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             S  +  +    +    G   + HP+ + +P+LR   +    E      G   R   +V+
Sbjct: 932  PSEADEIL---ADYDTTGLTLNRHPVALLRPVLRARRLSSAAELRDRPDGRLARACGIVI 988

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            ++Q   T KG  + ++T  +         
Sbjct: 989  ARQMPGTAKG--VLFMTLEDETGCVNVIV 1015


>gi|296129882|ref|YP_003637132.1| DNA polymerase III, alpha subunit [Cellulomonas flavigena DSM 20109]
 gi|296021697|gb|ADG74933.1| DNA polymerase III, alpha subunit [Cellulomonas flavigena DSM 20109]
          Length = 1173

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/1121 (26%), Positives = 478/1121 (42%), Gaps = 126/1121 (11%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
             P +  L  HS++S L+GA     +  + A   Q A+A+TD + L+  + F+Q A A G+
Sbjct: 29   PPRYAELHAHSAFSFLDGASQPEELAAEAARLGQSALALTDHDGLYGVVRFAQAARAVGL 88

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKT-------------PFPTVPSIVLLVSTAEGYQRLIE 114
              + G +L +   D  +   + +              P P    +++L   A+GY+ L  
Sbjct: 89   PTVFGAELHLPAPDPRRHPREKRPTPGPPVLDAPTGVPDPRASHLLVLARGADGYRALSR 148

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS---------- 164
             ++  +L    K +    L  L E      ++LTG   G + RA                
Sbjct: 149  AIAEGHLRTGRKGAAEYHLEELAEAAAGQWLVLTGCRKGAVRRALAGGDPSGVLGVAPGG 208

Query: 165  -QVAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLS 221
             + A   L     LF  D + V    H   YD  R   +  LA    LPLVAT N  + +
Sbjct: 209  IEAARTELDRLVALFGRDNVAVETTMHGDAYDTDRADALATLAADARLPLVATGNVHYAT 268

Query: 222  EEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            E D +    L AV   + +   D      P  +L++ +EM+ +    P A+    ++A  
Sbjct: 269  ERDADLALALAAVRARSSLDDLDGWLPGAPVAHLRSAAEMLHLHRRHPSAVTTAADLAAE 328

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            C+F L + AP LP +   +       E   LR     G                     +
Sbjct: 329  CAFDLSLVAPSLPPYPVPDG----HTEATWLRELVRRGAAELY---GPPDAERVPGAYAQ 381

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L+ EL VI  + F GYFL+V D + + ++  I    GRGS A S   Y L +T +DP++ 
Sbjct: 382  LEHELRVIEDLGFPGYFLVVYDLVDFCRRQGIM-AQGRGSAANSAVCYVLRVTAVDPVKH 440

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFL P+R   PD D+D    RR+EVI++V   +G    AQ+    S + ++A+RD
Sbjct: 441  GLLFERFLAPERDGPPDIDVDIESARREEVIQHVYATHGRSHAAQVANVISYRPRSAVRD 500

Query: 461  VGRALQMPYSQVDRLCKLI--------PNDPAHPVSLQAIADDSRFRE------------ 500
              RAL     Q D     I        P  P+    L          E            
Sbjct: 501  AARALGYDAGQQDAWSTSIERWGSLRGPEKPSAWWHLTRSGPVGPGSEVAGMPTADNHDV 560

Query: 501  --------ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                    A  A+   + +++++++   L RH   H+ G+V+ DRP+ ++ P+       
Sbjct: 561  VPTRLPPSAAEAEEIPEHVIDLAERFLRLPRHLGIHSGGMVMCDRPVIEVCPVEWARMEG 620

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHL 611
              V Q++ +    AGL+KFD LGL  LT L+ +   + +   V +DL  +P +D   Y L
Sbjct: 621  RTVLQWDKEDCADAGLVKFDLLGLGMLTALRLAFTEVEKHEGVTLDLHGLPHEDPAVYEL 680

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKE 669
            L+   T+G+FQ+ES      L  ++P    DI+  V+L RPGPI       + NR  G+E
Sbjct: 681  LSAADTVGVFQVESRAQMGTLPRLRPSTFYDIVVEVALIRPGPIQGGSVHPFINRAKGRE 740

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQ 728
             +  +HPL++  L +T GV ++QEQ+MQ+A  ++ ++ +EAD LRRAM  K+  E M+  
Sbjct: 741  PVTYLHPLLEKSLGKTLGVPLFQEQLMQMAIDVADFTPAEADQLRRAMGSKRSMERMEAI 800

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            + R + G + NGI   +   IF+ L  FAD+GF +SHA ++A + Y ++W+K H+P  F 
Sbjct: 801  RSRLMEGMAANGIGSQVREQIFDKLKAFADFGFPESHAYSFAFLVYASSWLKVHHPAAFY 860

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV---------------------- 826
            A  +  +       +    DAR+  I+++ P V    V                      
Sbjct: 861  AGLLAAQPMGFYSPQSLAADARRHGIEVLRPDVLASEVLAVVERLGPPPHGGEPRLVPQP 920

Query: 827  --------------DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871
                          +  V    +   L  ++ +G   AR +++A  AD PF  L+D   R
Sbjct: 921  SGTGPTRPVGVRTGEGSVRTLAVRQGLTQVRTIGEDVARALVDARTADGPFTDLQDLVRR 980

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V         +E+L  AGALD  G  R   L +   +               + +     
Sbjct: 981  VHLT---TAQIEALATAGALDSLGVDRRSGLWAAGAL----------AQEGPDTLPGVAV 1027

Query: 932  GTFSDKIT-LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
            G  +  +  L    V  + V         G     +P    +  L   G+   E++  T 
Sbjct: 1028 GVKAPALPGLSGVEVATADVW------ATGVSVDSYPTQFVRDGLDAAGVLTVEQAFRTE 1081

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             G  + +A +V  +Q+  T +G  + +++  +         
Sbjct: 1082 EGRRVAVAGVVTHRQRPGTAQG--VTFLSLEDETGLLNIVC 1120


>gi|323464219|gb|ADX76372.1| DNA polymerase III subunit alpha [Staphylococcus pseudintermedius
            ED99]
          Length = 1063

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1026 (33%), Positives = 533/1026 (51%), Gaps = 86/1026 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H++Y LL  ++++   + +       AIAITD N ++   +F       GI+P++
Sbjct: 3    AHLNIHTAYDLLNSSITIEGAVQRTIELGYSAIAITDLNVMYGVPQFYDACIQHGIKPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +  Q N+                V++    EG Q L +L S + +          
Sbjct: 63   GMTVYLTDQLNVLEA-------------VVIAKNNEGLQNLFKLSSDIKVNR-------- 101

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                                   I     +    +    ++ FK++     + + +   G
Sbjct: 102  -----------------------IKHVSIYEKKDLFNDTVVIFKQMTNQEKHWHEEMPDG 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
               + + Q    A   ELP V    + +   ED  A  VL A+  +T V+  D    TP 
Sbjct: 139  VTCFTDHQS---AEDCELPKVLMQAAYYEKTEDKNALKVLHAIRDNTKVNLVD-SHETPT 194

Query: 252  HYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             ++ +   +    S   EA L  T EIA  C   L+ H  +LP F+  +          E
Sbjct: 195  EHIYDVDALYD--SQFAEAWLARTDEIANMCDAKLEYHQALLPEFVTPDGSSANAYLWAE 252

Query: 311  L-RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            L R  A  GL                 YR+RL +E +VI +M ++ YFLIV+D I++AK 
Sbjct: 253  LERALADFGLTE-------------ARYRKRLKYEYDVITQMGYADYFLIVSDLIRYAKS 299

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N + VGPGRGS AGS+ +Y L IT IDPL++ LLFERFLNP+R++MPD DIDF   +R++
Sbjct: 300  NGVMVGPGRGSSAGSLVSYLLNITTIDPLQYDLLFERFLNPERVTMPDIDIDFEDTQREK 359

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI YVQ KYG  RVA I+TFG L AKA  RDVGR +    + +    KLIP+     V+L
Sbjct: 360  VIHYVQQKYGDYRVAGIVTFGHLLAKAVARDVGRVMGFDETTLSEASKLIPSKLG--VTL 417

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                 + RF+     +   +R  E  +KLEGL R+ STHAAG+++ D+PL Q +P+    
Sbjct: 418  DEAYKEERFKAFVHRNHRHERWFEYCKKLEGLPRNTSTHAAGVIVNDQPLYQSIPLTEGE 477

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET 608
                 +TQ+ M   E+ GL+K DFLGL+ LT++ + +  + +   V +D+  IPFDD   
Sbjct: 478  TG--LLTQWTMTEAERIGLLKIDFLGLRNLTIIHQIIKQVTRDLKVDIDVEQIPFDDVHV 535

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL+   T GIFQLES G+R+ L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++  
Sbjct: 536  FELLSRGDTTGIFQLESEGVRRVLQKLQPEHFEDIVAVTSLYRPGPMEEIPTYIRRRHDP 595

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             ++  +HP + P+LK T GVIIYQEQ+MQIA   +G+S  EAD+LRRAM KK +E ++ +
Sbjct: 596  SQVTYLHPDLAPILKRTYGVIIYQEQIMQIASQFAGFSYGEADILRRAMSKKNREVLENE 655

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ FI GA + G ++T++  IF+L+ KFADYGF ++HA +Y+ I+Y   ++K HYP  F 
Sbjct: 656  RQHFIDGAKEKGYAETLSGQIFDLILKFADYGFPRAHAVSYSKIAYIMTYLKVHYPAYFY 715

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A  ++  + N  K     Q+A+Q +I I  P +N     +      +Y SL AIKGVG  
Sbjct: 716  ANILSNVIGNDMKTNMMIQEAKQQHITIHGPHINKSQWRYVATQEGVYISLGAIKGVGYQ 775

Query: 849  TARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            T + IM E     P+    DFC+R+ S+  +RR LE+L+  GA+DCFG +R  LLQS+D 
Sbjct: 776  TVQTIMNERREQGPYKDFFDFCNRIPSRLRSRRTLEALILTGAMDCFGKNRATLLQSIDK 835

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +            +   ++ A      + K    +     S    + E++ LGFY + HP
Sbjct: 836  VSDT-------DVSIDTDLLA---SVATIKQEYAETEEMPSQQLSDFEKQYLGFYVTAHP 885

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            ++      ++    G  +  A +    I +   + + +  +T++G ++ +V  ++     
Sbjct: 886  VE---KAFKQKQYLGIFQLQAHVTHQPILV--TLDAVRVIRTKQGQQMAFVELNDGITTM 940

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 941  DGVIFP 946


>gi|118589570|ref|ZP_01546975.1| DNA polymerase III, alpha subunit, putative [Stappia aggregata IAM
            12614]
 gi|118437656|gb|EAV44292.1| DNA polymerase III, alpha subunit, putative [Stappia aggregata IAM
            12614]
          Length = 1129

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/1063 (25%), Positives = 456/1063 (42%), Gaps = 82/1063 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS-------QKA 62
             +  L V S++S L GA     ++ + A     AIAITD N+L   +          + A
Sbjct: 16   RYAELAVTSNFSFLRGASHPEELVTRAAMLNLDAIAITDRNSLAGVVRAYSALKEIKRAA 75

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPF----------------PTVPSIVLLVSTA 106
               G+Q     Q+D   +     +     P                  +    V L +  
Sbjct: 76   AEEGVQIRSHSQIDTSSRKETNTSPPLPAPQTLKLPRLIVGARLCLQDSPLHWVALPTDR 135

Query: 107  EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
              Y+RL +L++      + K    +  + L     +G+I++    + P          + 
Sbjct: 136  AAYERLSQLLTLGKRRAE-KGECHLNFADLMN-ACKGMILI----ALPQPEMARETICET 189

Query: 167  AEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
            A+  +   ++     +++     + G D+       + A++   P+VA  + +       
Sbjct: 190  AKDHIHRLRQEAPGHVFLGAAPRYDGTDQAWFRTCARAAHSLAAPMVAVGDVMMHHAGRR 249

Query: 226  EAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
               DVL  +     +     R     +  LK   +M  +F   P AL  T+EIA RCSF 
Sbjct: 250  RLADVLTCLREGCTIDDIGTRALPNGERRLKAPEDMARLFRHHPAALRRTLEIATRCSFD 309

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            L   +   P  I        +  +  L      GLE R   G               + E
Sbjct: 310  LSELSYEYPDEITG-----NEPPQERLERLTYEGLERRYPAGVPDHA------LALAEKE 358

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L +I ++ F+ YFL V D I++A+  NI +  GRGS A S+  YAL ITD+ P   +++ 
Sbjct: 359  LKLIRKLAFAAYFLTVHDIIRFARSKNI-LCQGRGSAANSIICYALGITDVGPETITMVS 417

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERF++  R   PD D+DF  +RR+EVI+YV  KYG  R     T    + +AA+R+VG+ 
Sbjct: 418  ERFISEHRGEPPDIDVDFEHERREEVIQYVYEKYGRHRAGLCATVIHFRTRAAIREVGKV 477

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE--ARLADPSVDRLLEISQKLEGLY 522
            + +       L   I    +         +++R RE    L +P V + +E+ +++ G  
Sbjct: 478  MGLNADVTAALAGQIWGSSSKG------PEETRMREIGLDLDNPRVRQTIELIREIIGFP 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            RH S H  G VI    L  L P+      +  V +++   I+  G++K D L L  LT +
Sbjct: 532  RHLSQHVGGFVITQGRLDALCPIENAAMENRTVIEWDKDDIDALGILKVDLLSLGMLTCI 591

Query: 583  QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            +K  + +    G ++ L  +P  D +TY +L     +G+FQ+ES      L  M+P    
Sbjct: 592  RKCFELIDTHHGQELTLGTVPQADKKTYDMLCVADAIGVFQVESRAQMNFLPRMRPREFY 651

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            D++  V++ RPGPI   +   Y NR+ G+EK+      ++ +L +T GV ++QEQ MQIA
Sbjct: 652  DLVIEVAIVRPGPIQGGMVHPYINRRQGREKVTFPSKALEEVLGKTLGVPLFQEQAMQIA 711

Query: 700  QLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
             + +G++ SEAD LRR+M   +    + + K++FISG  + G     A N F  +  F +
Sbjct: 712  VVAAGFTPSEADKLRRSMATFRRMGTIGQLKDKFISGMLERGYELEFAQNCFGQIEGFGE 771

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGF +SHAAA+A+++Y +A++K H+P EF  A +  +        +  +DAR+  +++ P
Sbjct: 772  YGFPESHAAAFAMLAYVSAYLKCHFPAEFACALLNAQPMGFYAPAQIVRDAREHQVEVRP 831

Query: 819  PSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
              VNT   D  +     G   +      IKG+    A  I+ A  +  +   E    R  
Sbjct: 832  VCVNTSLWDNTLERRSDGALALRLGFRQIKGLREEDAAWIVAARGNG-YPDTETLWLRT- 889

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--- 930
               +    LE L  A A    G SR   L  +  I          R+ K   +F      
Sbjct: 890  --GVMPTTLERLAEADAFAGMGLSRRAALWQVKTI----------RSPKPLPLFNDPIDG 937

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
            +  F   + L    +    V    +          HP+++ +P +  +       ++   
Sbjct: 938  EAIFEPDVLLPTMHLGQEVV---EDYLSTRLTLRAHPMELLRPHIPHLTPHDRLAALTPR 994

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                + +  +V+++Q+  T  G  + ++T  +         +P
Sbjct: 995  EARRVSVCGLVITRQRPGTASG--VIFLTLEDETGVSNVVVWP 1035


>gi|315658035|ref|ZP_07910908.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus
            lugdunensis M23590]
 gi|315496925|gb|EFU85247.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus
            lugdunensis M23590]
          Length = 1067

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/1024 (32%), Positives = 525/1024 (51%), Gaps = 81/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL +H+SY LL  +L + +++ K +     A+AITDTN L+   +F     +A I+PI 
Sbjct: 6    VHLNIHTSYDLLNSSLKIEDVVAKASKQGYTALAITDTNVLYGYPKFYDACVSANIKPIF 65

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + I                 +    VL     EG   + +L S + + D       +
Sbjct: 66   GMTVYITDG-------------LSSVEAVLYALNNEGLTAMYQLSSAIKMKD----KSLV 108

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               W+ +  +   I+                  +  E++     + F +  ++ +     
Sbjct: 109  PFEWITKYQSNIAIV-----------------FKQVEQKHEHILEKFLNDEFIYVNSDSK 151

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D               L  V    + +L++ D +    L A+  +  +   +      +
Sbjct: 152  ND-------------FGLLRVWLRTARYLNDNDADTIAALQAIKLNEKLDLVNEMDNLNE 198

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            H+L+     +   +   E    T  +A +C+  +Q H  +LP+F   +            
Sbjct: 199  HFLEASE--LDELTVSQEEWAQTQALAEKCNAEIQYHQSLLPQFKTPDNSS--------- 247

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
               + A L  +L Q       + ++Y  RL+ E  +I  M F  YFLIV+D I +AK ++
Sbjct: 248  ---SKAYLWKQLVQRLKTLQLNQKNYIDRLNHEFKIITNMGFEDYFLIVSDLIHYAKTHD 304

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDP++++LLFERFLNP+R++MPD DIDF   RR+ VI
Sbjct: 305  VMVGPGRGSSAGSLVSYLLGITTIDPIKYNLLFERFLNPERVTMPDIDIDFEDTRRERVI 364

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             YVQ KYG   V+ I+TFG L A+A  RDVGR +      +  + KLIP+     ++L  
Sbjct: 365  EYVQQKYGEYHVSGIVTFGHLLARAVARDVGRIMGFDEITLAEISKLIPHQLG--ITLNQ 422

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
              D+ +F++    +   ++  E+ +KLEGL RH STHAAGI+I D+PL   VP+   +  
Sbjct: 423  AYDNDKFKDFVHRNYRHEKWFELCKKLEGLPRHTSTHAAGIIINDQPLFNFVPL--TIGD 480

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + +  +     V++D+  IPFDD + + 
Sbjct: 481  TGLLTQWTMTEAERLGLLKIDFLGLRNLSIIHQIVTQVKYDLNVEIDIEAIPFDDPKVFA 540

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ ++P   EDI+A+ SLYRPGP++ I  Y  R++   K
Sbjct: 541  LLSQGETTGIFQLESEGVRHVLQRLKPQHFEDIVAVTSLYRPGPMEEIPTYITRRHEPSK 600

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+MQIA   +G+S  EAD+LRRAM KK +  ++ +++
Sbjct: 601  VAYLHPDLEPILKSTYGVIIYQEQIMQIASRFAGFSYGEADILRRAMSKKNRAVLENERQ 660

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A 
Sbjct: 661  HFVEGAQRNGYEEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFYAN 720

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + N +K     ++A+   I I+PP +N     +K     IY SL AIKGVG  + 
Sbjct: 721  ILSNVVGNEQKTAAIIEEAKIQGIAILPPHINHSHWFYKATPQGIYLSLGAIKGVGYQSV 780

Query: 851  RHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+    +   F S +DF  R+  +   R++LESL+  GA D  G++R   LQ +D   
Sbjct: 781  KTIVNNRKEQGNFKSFKDFSKRIPKRIKTRKLLESLILVGAFDSLGHNRATSLQMIDEAV 840

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 V         +IF     T  D+I  E+ +  N       E+  LGFY S HP++
Sbjct: 841  DDITHV-------GLDIFDIAGMTPKDEI--EEQAELNDLQLSMYEKEYLGFYISKHPVE 891

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                  + +GI     +          +       +Q +T+KG ++ +V  ++  K  + 
Sbjct: 892  KMFHRKQFLGIYTLANAANHQP-----ILVQFDQIKQIRTKKGQQMAFVVVNDGIKVIDG 946

Query: 1030 NFFP 1033
              FP
Sbjct: 947  VIFP 950


>gi|158335662|ref|YP_001516834.1| DNA polymerase III subunit alpha [Acaryochloris marina MBIC11017]
 gi|158305903|gb|ABW27520.1| DNA polymerase III alpha subunit [Acaryochloris marina MBIC11017]
          Length = 864

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/788 (38%), Positives = 461/788 (58%), Gaps = 36/788 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L +++ +      PAIA+TD   ++ A+   +     GI+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPDLVSRAVELNMPAIALTDHGVMYGAIGLIKTCKKQGIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           I+G ++ +   D  K   + +         V+L    +GYQ L++L +   L   QG+  
Sbjct: 62  IVGNEMYVINGDITKQERRPR------YHQVVLAKNKKGYQNLVKLTTISSLHGVQGRGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L+E   EGLI+ +    G I +A       +A +    +K+LFGD  Y+ 
Sbjct: 116 FSRPCINKDLLEE-HHEGLIVTSACLGGEIPQAIMKEKPDIARRIAKWYKELFGDDYYLE 174

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR    ++V++A   ++ ++ATN+S F+S  D E+HD L+ +    ++++  
Sbjct: 175 IQDHGSQEDRVVNVELVRIAQELDIKVIATNDSHFISCYDVESHDALLCIQTGKLITEDK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           R R +   YLK   EM  +F D      + +A+  T+E+A +         P  P +   
Sbjct: 235 RLRYSGTEYLKTADEMALMFRDHLTDDVIADAIATTLEVAEKIEAYDIFRDPQSPDYEVP 294

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
           +        E  L      GL  R       +      Y++RL++EL ++ +M FS YFL
Sbjct: 295 DG----YTAETYLEEVTWDGLLERC--NCKERSEVTDTYKERLEYELEMLQQMGFSTYFL 348

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           +V D+I++A+ NNIPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 349 VVWDYIKYARDNNIPVGPGRGSAAGSLVAYALGITNIDPVHHGLLFERFLNPERKSMPDI 408

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D DFC ++RD +I YV  KYG +RVAQIITF  + +KA L+DV R L +PY + DR+ KL
Sbjct: 409 DTDFCIEKRDAMIDYVTRKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADRMAKL 468

Query: 479 IPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           IP     P  L+ +  D      F+E    DP V R L+++ ++EG  +    HAAG+VI
Sbjct: 469 IPVARGKPTKLKVMISDETPAPEFKEKYDKDPIVRRWLDMAIRIEGTNKTFGVHAAGVVI 528

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
              PL Q+VP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++QK+ D L Q R 
Sbjct: 529 ASEPLDQIVPLQRN-NDGAVITQYFMEDLESLGLLKMDFLGLKNLTMIQKTTDLLKQNRQ 587

Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
           + +D+  +P DD E + LL      G+FQLESSGMRQ ++ ++P  IEDI ++++LYRPG
Sbjct: 588 LDLDVDRVPMDDPEAFQLLARGELEGVFQLESSGMRQVVKDLKPSNIEDISSILALYRPG 647

Query: 654 PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           P+D   I  + NRK+G+E I   H LI P+L+ET G+++YQEQ+M+IAQ ++GYSL +AD
Sbjct: 648 PLDAGLIPKFINRKHGRESIDYPHDLIKPILEETYGIMVYQEQIMKIAQDMAGYSLGQAD 707

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           +LRRAMGKK   EM+K +E FI GA++ G+ K ++ N+F+ +  FA+Y  +        V
Sbjct: 708 LLRRAMGKKKMAEMEKHREIFIDGAAEKGVDKKVSENLFDQMLLFAEYCLSYDTP----V 763

Query: 772 ISYQTAWM 779
           ++ +  W+
Sbjct: 764 LTLEYGWL 771


>gi|21241953|ref|NP_641535.1| DNA polymerase III subunit alpha [Xanthomonas axonopodis pv. citri
            str. 306]
 gi|21107345|gb|AAM36071.1| DNA polymerase III alpha chain [Xanthomonas axonopodis pv. citri str.
            306]
          Length = 1065

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/1058 (25%), Positives = 472/1058 (44%), Gaps = 95/1058 (8%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q  +  P++  L   S +S L GA S   +  +       A+AITD  +L   +   + 
Sbjct: 21   AQQADGLPAYAELHCLSDFSFLRGASSAEQLFARAQQCGYSALAITDECSLAGIVRGLEA 80

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            + A G++ I+G +  +                      VLLV  A GY +L  L++    
Sbjct: 81   SRATGVRLIVGSEFTLVDGTRF----------------VLLVENAHGYPQLCGLITTARR 124

Query: 122  LDQGKQSVRICLSWLQEIGT---EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
                K + R+  + +Q        G+  L           +   +   AE+     +++F
Sbjct: 125  A-ASKGAYRLDRAEVQAQFRDVAPGVFAL-----------WLPGAQPQAEQGA-WLQQVF 171

Query: 179  GDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            G+R ++ ++ HR  D   R   +  LA    +  +A+ +       +    D L A+ H+
Sbjct: 172  GERAFLAVELHREQDDVARLHVLQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRHT 231

Query: 238  TVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              +++         + +L+ R  + +I+ D    L+ TVE+A+RC+F +   +   PR +
Sbjct: 232  LPLAECGAHLFRNGERHLRTRRALGNIYPDA--LLQATVELAQRCTFDISKISYTYPREL 289

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E         + LR    AG+  R   G  AK       R+ ++ EL +IA  K+  +
Sbjct: 290  VPEG----HTPTSYLRQLTEAGIRRRWPGGITAK------VREDIEKELALIALKKYEAF 339

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D +++A++ NI +  GRGS A S   YAL IT ++P    LL  RFL+  R   P
Sbjct: 340  FLTVQDVVRFAREQNI-LCQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPP 398

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  +RR+EV++YV +KYG ER A   T    + K+A+RDV +A  +P  Q+  L 
Sbjct: 399  DIDVDFEHERREEVLQYVYSKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLA 458

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                         Q I +        LA+P ++++L +++ L    RH S H  G VI D
Sbjct: 459  NCYGWGNGETPMDQRIEE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISD 514

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVK 595
             PLS LVP+     ++  + Q++   +E   L+K D L L  LT ++K+LD +   RG  
Sbjct: 515  EPLSLLVPVENAAMANRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRN 574

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              ++ +P  D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 575  YSIATLPGGDAPTYKMIQRADTVGVFQIESRAQMAMLPRLKPAAFYDLVIEVAIVRPGPI 634

Query: 656  --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              D +  Y  R+ G+E++    P ++ +LK T GV ++QEQVM++    + YS  EAD L
Sbjct: 635  QGDMVHPYLRRRQGREEVNYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYSEDEADNL 694

Query: 714  RRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RR+M    +  +M++ + R        G + +    IFE +  F  YGF +SHAA++A +
Sbjct: 695  RRSMAAWRRGGDMEQHRTRVRERMQGKGYASSFIDQIFEQIKGFGSYGFPQSHAASFAKL 754

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-----QFNIQIMPPSVNTPCVD 827
             Y + W+K H P  F    +  +        +  QDAR     +  ++++P  V     D
Sbjct: 755  VYASCWLKRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWD 814

Query: 828  FKVGDNRIY-------------YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
              +   R +               +  + G+    A+ I+ A   + F  + D C R   
Sbjct: 815  NTLVGGRPWRSAADPGEQPAIRLGMRQVAGLSQVVAQRIVAARTQRAFADIGDLCLRA-- 872

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
              L+ +   +L  AGAL     +R     ++  ++     +                G+ 
Sbjct: 873  -ALDEKARLALAEAGALQGMVGNRNAARWAMAGVEARCPLL---------------PGSP 916

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    +F    +      + R +G     HP+ + +P +R+  I G  E      G+ 
Sbjct: 917  EERPV--EFEAPRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRRHGSG 974

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +A +V  +Q+  T KG+   +VT  +         +
Sbjct: 975  VHVAGLVTQRQRPATAKGT--IFVTLEDEQGMINVIVW 1010


>gi|120611396|ref|YP_971074.1| DNA polymerase III subunit alpha [Acidovorax citrulli AAC00-1]
 gi|120589860|gb|ABM33300.1| error-prone DNA polymerase, DnaE-like protein [Acidovorax citrulli
            AAC00-1]
          Length = 1044

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/1041 (26%), Positives = 462/1041 (44%), Gaps = 80/1041 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L+  SS+S L GA   + ++++ A     A+A+TD  +L   +     A   G+Q
Sbjct: 14   PAYAELRCASSFSFLIGASHPHELVERAAQLGYTALALTDECSLAGIVRAHVAAKQCGLQ 73

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G Q  +     +              ++ +L    EGY  L   ++R+    Q K +
Sbjct: 74   LLVGAQFKVAPDGGMP-----------PCTLTVLACDLEGYGNLCAFITRLRRAAQ-KGT 121

Query: 129  VRICLSWL--QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              +    L  +++    +I      S  I                    + F  R ++ +
Sbjct: 122  YELAARDLSGKDLAGCVVICSPERMSAAIQLQTL----------AEWLLRHFMGRCWIGV 171

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            +  R   D    +++   +    LPLVAT +  F         D + AV     +++   
Sbjct: 172  EMLRQIDDEAWLARLRATSEASALPLVATGDVHFHVRSRKPLQDTMTAVRLGRPLAECGL 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              +   + +L+ R  +   +    E LE T+ +A RC F L       P  +    +   
Sbjct: 232  DLQPNAERHLRTRLRLAQTYP--AELLEETLRVAARCDFSLDELRYNYPAEVVPPGE--- 286

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR     G   R   G   K       ++ ++ EL++I  +++  YFL VAD +
Sbjct: 287  -TPASHLRRLTYEGAARRWPAGIPPK------VQEIVEHELSLIEDLRYEHYFLTVADIV 339

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+   I +  GRGS A S   Y L +T++DP R S+LFERFL+ +R   PD DIDF  
Sbjct: 340  DFARSRGI-LCQGRGSAANSAVCYCLHVTEVDPARMSVLFERFLSRERNEPPDIDIDFEN 398

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EVI+Y+  KYG ER A      S + ++ALRDVG+AL      V  L K       
Sbjct: 399  ARREEVIQYLYGKYGRERAALTAVVTSYRPRSALRDVGKALGFDEGTVSALAK------D 452

Query: 485  HPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            H    +    D + +   L   D  V +LLE++++L G  RH S H  G V+   PL ++
Sbjct: 453  HQWWEEDSVRDEQLQALGLDAEDLRVRQLLELTEQLLGFPRHLSQHPGGFVLTQDPLCRM 512

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVDLS 599
            VP+      D  V Q++   ++ AGL+K D L L  LT ++K+L  + Q       +DL 
Sbjct: 513  VPIENAAMEDRTVIQWDKDDLDAAGLLKVDVLALGMLTAIRKALVMVGQIRGLDDALDLQ 572

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP +D  TY +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGPI   +
Sbjct: 573  DIPAEDPATYEMLCRADSIGVFQVESRAQMSMLPRLRPRCFYDLVVQVAIVRPGPIQGGM 632

Query: 660  --VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
               Y +R+ G   +      +  +L  T GV ++QEQVMQ+A + +G+S  EAD LRRAM
Sbjct: 633  VHPYLDRRQGLVPVTYPSEALREVLGRTLGVPVFQEQVMQLAIVAAGFSAGEADGLRRAM 692

Query: 718  GK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
               K K  ++K   + + G    G  +  A  +F  +  F++YGF +SHAA++A++ Y +
Sbjct: 693  AAWKRKGGLEKYHAKLVDGMLARGYEREYAERVFLQVYGFSEYGFPESHAASFALLVYAS 752

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD---- 832
            +W+K H+P  FLAA +  +        +  QDAR+  + +  P V     D  + D    
Sbjct: 753  SWIKRHHPAAFLAALLNSQPMGFYSPSQLVQDARRHGVGVRAPDVLHSGWDCTLEDLPHA 812

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              +   L  + G+G   A  I  A A++PF  +ED   R    +   RVL     AG   
Sbjct: 813  PAVRLGLRLVNGLGQAAAERIEAARAERPFQDVEDLALRASLDQPTLRVL-----AGG-- 865

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                     L SL   ++   W    +      +   +       + L +    ++ V  
Sbjct: 866  -------DALASLAGHRRQQVWDAAGQHAAPALL--RDAPVGEAMLELPEAPEGDAVV-- 914

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +   LG     HP+ + +P LR+      E+      G  +    +V  +QQ  T KG
Sbjct: 915  -QDYSALGLTLRSHPVALLRPQLRRY--HTAEQLANVRDGFRLAACGLVTLRQQPGTAKG 971

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
            +   +V+  +     +   +P
Sbjct: 972  T--IFVSIEDETGTVQVIVWP 990


>gi|71151844|sp|Q8PN74|DNAE2_XANAC RecName: Full=Error-prone DNA polymerase
          Length = 1083

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/1058 (25%), Positives = 472/1058 (44%), Gaps = 95/1058 (8%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q  +  P++  L   S +S L GA S   +  +       A+AITD  +L   +   + 
Sbjct: 39   AQQADGLPAYAELHCLSDFSFLRGASSAEQLFARAQQCGYSALAITDECSLAGIVRGLEA 98

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            + A G++ I+G +  +                      VLLV  A GY +L  L++    
Sbjct: 99   SRATGVRLIVGSEFTLVDGTRF----------------VLLVENAHGYPQLCGLITTARR 142

Query: 122  LDQGKQSVRICLSWLQEIGT---EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
                K + R+  + +Q        G+  L           +   +   AE+     +++F
Sbjct: 143  A-ASKGAYRLDRAEVQAQFRDVAPGVFAL-----------WLPGAQPQAEQGA-WLQQVF 189

Query: 179  GDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            G+R ++ ++ HR  D   R   +  LA    +  +A+ +       +    D L A+ H+
Sbjct: 190  GERAFLAVELHREQDDVARLHVLQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRHT 249

Query: 238  TVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              +++         + +L+ R  + +I+ D    L+ TVE+A+RC+F +   +   PR +
Sbjct: 250  LPLAECGAHLFRNGERHLRTRRALGNIYPDA--LLQATVELAQRCTFDISKISYTYPREL 307

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E         + LR    AG+  R   G  AK       R+ ++ EL +IA  K+  +
Sbjct: 308  VPEG----HTPTSYLRQLTEAGIRRRWPGGITAK------VREDIEKELALIALKKYEAF 357

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D +++A++ NI +  GRGS A S   YAL IT ++P    LL  RFL+  R   P
Sbjct: 358  FLTVQDVVRFAREQNI-LCQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPP 416

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  +RR+EV++YV +KYG ER A   T    + K+A+RDV +A  +P  Q+  L 
Sbjct: 417  DIDVDFEHERREEVLQYVYSKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLA 476

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                         Q I +        LA+P ++++L +++ L    RH S H  G VI D
Sbjct: 477  NCYGWGNGETPMDQRIEE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISD 532

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVK 595
             PLS LVP+     ++  + Q++   +E   L+K D L L  LT ++K+LD +   RG  
Sbjct: 533  EPLSLLVPVENAAMANRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRN 592

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              ++ +P  D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 593  YSIATLPGGDAPTYKMIQRADTVGVFQIESRAQMAMLPRLKPAAFYDLVIEVAIVRPGPI 652

Query: 656  --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              D +  Y  R+ G+E++    P ++ +LK T GV ++QEQVM++    + YS  EAD L
Sbjct: 653  QGDMVHPYLRRRQGREEVNYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYSEDEADNL 712

Query: 714  RRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RR+M    +  +M++ + R        G + +    IFE +  F  YGF +SHAA++A +
Sbjct: 713  RRSMAAWRRGGDMEQHRTRVRERMQGKGYASSFIDQIFEQIKGFGSYGFPQSHAASFAKL 772

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-----QFNIQIMPPSVNTPCVD 827
             Y + W+K H P  F    +  +        +  QDAR     +  ++++P  V     D
Sbjct: 773  VYASCWLKRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWD 832

Query: 828  FKVGDNRIY-------------YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
              +   R +               +  + G+    A+ I+ A   + F  + D C R   
Sbjct: 833  NTLVGGRPWRSAADPGEQPAIRLGMRQVAGLSQVVAQRIVAARTQRAFADIGDLCLRA-- 890

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
              L+ +   +L  AGAL     +R     ++  ++     +                G+ 
Sbjct: 891  -ALDEKARLALAEAGALQGMVGNRNAARWAMAGVEARCPLL---------------PGSP 934

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    +F    +      + R +G     HP+ + +P +R+  I G  E      G+ 
Sbjct: 935  EERPV--EFEAPRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRRHGSG 992

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +A +V  +Q+  T KG+   +VT  +         +
Sbjct: 993  VHVAGLVTQRQRPATAKGT--IFVTLEDEQGMINVIVW 1028


>gi|298694972|gb|ADI98194.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            ED133]
          Length = 1065

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/1025 (31%), Positives = 522/1025 (50%), Gaps = 83/1025 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L     G + L +L S++ +         +
Sbjct: 63   GMTIYVTNGLNTIET-------------VVLAKDNNGLKDLYQLSSKIKMNSMEN----V 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                LQ+  +  +I+             F N +      +  F                 
Sbjct: 106  SFELLQQFSSNLIII-------------FKNVADEHRDIVQVFDSH-------------- 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y + Q V +     +  V      + + +D +    L A+  +T +      +    
Sbjct: 139  EDTYLDHQSVLV---QGIKHVWIQTVCYQTPQDADTISALAAIRDNTKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +     E+  +  D+  E L     IA++C+  L+ H  +LP++     +         
Sbjct: 195  AHFLTEKEIKQL--DINQEYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDES-------- 244

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                A   L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N
Sbjct: 245  ----AKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTN 300

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ V
Sbjct: 301  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERV 360

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L 
Sbjct: 361  IQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLD 418

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +   
Sbjct: 419  EAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDT 478

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFD+ + +
Sbjct: 479  G--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDNQKVF 536

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   
Sbjct: 537  ELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHNPS 596

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ ++
Sbjct: 597  KVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESER 656

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A
Sbjct: 657  QHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYA 716

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  +
Sbjct: 717  NILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQS 776

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +
Sbjct: 777  VKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQV 836

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  +E++       +F       + K   E       ++  + E+  LGFY S HP+
Sbjct: 837  LDGDLNIEQD-----GFLF----DILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPV 887

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            D  K  + K  +  ++          I +       +Q +T+ G  + +VT ++  +  +
Sbjct: 888  D--KKFVAKQYLTIFK-LSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLD 942

Query: 1029 ANFFP 1033
               FP
Sbjct: 943  GVIFP 947


>gi|291301059|ref|YP_003512337.1| DNA polymerase III subunit alpha [Stackebrandtia nassauensis DSM
            44728]
 gi|290570279|gb|ADD43244.1| DNA polymerase III, alpha subunit [Stackebrandtia nassauensis DSM
            44728]
          Length = 1073

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/1048 (27%), Positives = 459/1048 (43%), Gaps = 82/1048 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS++S L+GA S  +++ +        +AITD + L+ A+ F+Q A   G+  
Sbjct: 29   GYAELHAHSNFSFLDGASSPEDLVAEALRLGLSGLAITDHDGLYGAVRFAQAAKGTGLAT 88

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + G +L I +        +   P P+   +++L   AEGY +L   +   +L    K   
Sbjct: 89   VYGAELSIGL-----TGERAGVPDPSGTHLLVLARGAEGYAKLSAAIGNAHLAGGQKGLP 143

Query: 130  RI-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
                L  +       +++LTG   GP+ RA        A   L    +LF  D +YV L 
Sbjct: 144  DYGSLEGVAARLRGHVVVLTGCRKGPVRRALDAGGVDAARVELERLVELFGRDGVYVELT 203

Query: 188  RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
             H+ + D  R   +  LA    L +VATNN  +     +    V  AV  +  + + D  
Sbjct: 204  DHQAFTDGDRNEALADLASELGLSVVATNNVHYARSSRHRLSQVAAAVRANMPLDELDGW 263

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                P   L +  EMV  F+    A+ +++ +AR  +F L + AP LP F      D   
Sbjct: 264  LPAAPTARLCSPDEMVERFAPFGGAVASSLRLARELAFDLDLVAPALPPFPVPAGHD--- 320

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E++ LR+   AG   R             D  ++LD EL+VI R+ F+GYFLIV D + 
Sbjct: 321  -EDSWLRHLVQAGAAERYGPLG-----SRSDVVRQLDHELDVIKRLGFAGYFLIVHDIVD 374

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            + ++  I V  GRGS A SV  + L IT  DP+ F LLFERFL+P R   PD D+D    
Sbjct: 375  YCRREGILV-QGRGSAANSVVCFTLGITAADPIAFKLLFERFLSPAREGPPDIDLDIEAR 433

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+ VI+YV + YG    AQ+    + + ++A+RD   AL     QVD      P     
Sbjct: 434  RREAVIQYVYDTYGRTYAAQVANVITYRRRSAIRDSAAALGYSPGQVDAWIAASPRRGGP 493

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++                      +   + +L G  RH   H+ G+VI DRP+  +VP+
Sbjct: 494  ALT-----------------ELPADVGTYAGQLLGAPRHLGIHSGGMVICDRPIIDVVPV 536

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                     V Q++      AGL+K D LGL  LT L+++ D       V VDL+ +  D
Sbjct: 537  EHARMDKRTVLQWDKDDCADAGLVKIDLLGLGMLTALREARDVANAHYDVPVDLAALTPD 596

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYN 662
            D E Y ++     +G FQ+ES    Q    ++P  + D+   ++L RPGPI       Y 
Sbjct: 597  DAEVYAMVHKGDAIGTFQIESRAQLQLAPRLRPANLHDLAVQIALVRPGPIQGGAVHPYL 656

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKI 721
             R++G E +V  H L  P L+++ GV ++QEQ+MQ+A    G+S ++AD LR+AM  K+ 
Sbjct: 657  RRRDGLEPVVYPHRLAQPALEKSLGVPLFQEQMMQLAVDCGGFSPADADELRQAMGAKRS 716

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E M + K+RF +GA+ N I      +++  +  F+ YGF +SHA ++A I+Y + ++K 
Sbjct: 717  AERMHRLKDRFYAGAAANDIPHATIDDLWSRMEAFSGYGFPESHAISFAYIAYASCYLKR 776

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP----------------- 824
            +YP  FL   +  +      I     DAR+  ++I P  +N                   
Sbjct: 777  YYPAAFLTGLIRAQPMGFYSINTLIADARRHGVRIHPVHINHSHATTTLDGHGTPAPADA 836

Query: 825  -CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                +  G   +   L  + G+  T A  I      +P+ S+ D   R     L    LE
Sbjct: 837  PARQWGSGGPAVRLGLNQVHGISDTVAERIA---VGQPYTSITDLARRA---GLTETHLE 890

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            +L  AGAL   G +R Q L                          H+    + ++T    
Sbjct: 891  NLATAGALTALGPTRRQALWMAAPAAAN----------------THDTIDGTIQLTAPML 934

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
               +++     +    G     HP++  +  L        ++         + +  +V  
Sbjct: 935  PGMSNAELTAADLTATGSSVDSHPIEHIRHQLDAHDATPIDQLATLPDRTRVVVGGIVTH 994

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +Q  +T  G  I ++   +   +     
Sbjct: 995  RQAPETAGG--ILFINLEDETGQANIVC 1020


>gi|314933855|ref|ZP_07841220.1| DNA polymerase III, alpha subunit [Staphylococcus caprae C87]
 gi|313654005|gb|EFS17762.1| DNA polymerase III, alpha subunit [Staphylococcus caprae C87]
          Length = 1067

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/1024 (31%), Positives = 533/1024 (52%), Gaps = 81/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H++Y LL  +L + ++++K   +   A+AITDT+ L+   +F     A  I PI 
Sbjct: 3    AHLNIHTAYDLLNASLKIEDVVNKAKNEGYRALAITDTHVLYGFPKFYDACIAKDIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +        T             V+L    EG + L +L S + +    K+   +
Sbjct: 63   GMTITLTDGLYTVET-------------VVLAQNNEGLKALYQLSSAIKM----KEKEEV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             L WL+      +I+             F +     ++ +  F       +Y+N   +  
Sbjct: 106  PLEWLKRYDKNLIII-------------FKDIDNTHKQIIEAFDD--KIHVYINHTSNDI 150

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             +R +               V   ++ +L+ ED +    L A+  ++ +   +  +   +
Sbjct: 151  VNRKK---------------VWLKSARYLNREDADTISALQAIKDNSKLDIINDSKDFGE 195

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            H   ++ E   +  D  +  +NT +I   C   L  H  +LP+++  + +  +    + L
Sbjct: 196  H-FPDQKEFEELEID-EKIKQNTEDIVDLCKAELVYHQSLLPQYVTPDGEVSKDYLWSVL 253

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
              K                  + + Y  RL  E  +I +M F  YFLIV+D +Q+AK ++
Sbjct: 254  IRKLNEW------------NLNNEQYLNRLKHEYEIITKMGFEDYFLIVSDLMQYAKTHD 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLEITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     ++L  
Sbjct: 362  QYVQEKYGELHVSGIVTFGHLLARAVGRDVGRIMGFDETTLNEISKLIPHKLG--ITLDK 419

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  F+     +   +   E+S+KLEGL RH STHAAGI+I D+PL +  P+      
Sbjct: 420  AYQEEDFKSFVHRNHRNELWFEMSKKLEGLPRHTSTHAAGIIINDQPLYKYAPLTLGDTG 479

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + ++ + +   V +D+  IPFDD   + 
Sbjct: 480  --LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIVNQVKKDLDVDIDVEAIPFDDKNVFK 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++   K
Sbjct: 538  LLSQGDTTGIFQLESEGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSK 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +H  ++ +LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++
Sbjct: 598  VEYLHNDLESILKSTYGVIIYQEQIMQIASKFANFSYGEADILRRAMSKKNRAVLENERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA +NG ++ I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K +YP  F A 
Sbjct: 658  HFVNGAKQNGYNEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVYYPNYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K      +A+   + I+PP++N     +K     IY SL AIKGVG  + 
Sbjct: 718  ILSNVIGSEKKTSAIIDEAKHQKLNILPPNINESHWYYKATSKGIYLSLGAIKGVGYQSV 777

Query: 851  RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I++    +  F    DF  R+  +  +R++LE+L+  GA D FG +R  LLQ++D + 
Sbjct: 778  KTIVDERYNNGKFKDFFDFTRRIPKRVKSRKLLEALILVGAFDHFGKNRATLLQTIDQVL 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
              A  VE++     + +F       + K   E        +  + E+  LGFY S HP++
Sbjct: 838  DTASDVEQD-----DMLF----DILTPKQAYEDKEELPDKMLSDYEKEYLGFYISKHPVE 888

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                   K    G  +         I +     + +Q +T+ G  + +VT ++     + 
Sbjct: 889  ---KEFDKKQYLGIYKLGNAQNHQPILV--QFDAIKQIRTKNGQNMAFVTLNDGMLLMDG 943

Query: 1030 NFFP 1033
              FP
Sbjct: 944  VIFP 947


>gi|296447098|ref|ZP_06889030.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b]
 gi|296255367|gb|EFH02462.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b]
          Length = 1065

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/1058 (24%), Positives = 442/1058 (41%), Gaps = 91/1058 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  L   +++S L GA     ++ +    +   + I D N+L   +           
Sbjct: 2    APRYAELATATNFSFLRGASHPEEMVARALELRHCGVGIADRNSLAGVVRAFSFLREHA- 60

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
                      +     ++    +  F    P I+        Y RL  L++R  +  + K
Sbjct: 61   ----------EAAPGFRLAVGARLVFADETPDILCYPQDRAAYGRLCRLLTRGNMRAE-K 109

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R+ L  L   G    I++               +   A  R       F  RL++  
Sbjct: 110  GECRLLLDDLLAFGAGQQIIV-----------MENGALPPAVARA------FRGRLWLAA 152

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                G D R    + + LA   +LPL+A N+ L          DVL  V   T + +   
Sbjct: 153  TALYGPDMRAALLRRIALAQETKLPLIAVNDPLMHDPARRPLADVLACVREKTTLDEAGF 212

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  +  LK+  EM  +F+  PEA+  T       SF L   A   P     E  +  
Sbjct: 213  LLSANAERCLKSGEEMARLFAAAPEAVAETARFLDGLSFRLTDLAYHYP----SELREGF 268

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              E+  L + A  G + R   G        +     L  EL ++A++ ++ YFL V D +
Sbjct: 269  SSEQEALAHFAREGAKTRYPDGV------PETVEALLRHELKLVAQLNYAAYFLTVHDIV 322

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+   I +  GRGS A SV  Y L +T++DP +  LLFERF++  R   PD D+DF  
Sbjct: 323  RFARSRGI-LAQGRGSAANSVICYCLGVTEVDPTKHDLLFERFVSAARNEPPDIDVDFEH 381

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EV++Y+  ++G ER     +  + ++++A+R+VG+A  +    V RL   +     
Sbjct: 382  ERREEVMQYIYERFGRERAGLTASVVTYRSRSAIREVGKAFGLSADVVSRLSGNVWGASR 441

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              VS + +A         + DP + + LE++++L G  RH S H  G VI    L ++VP
Sbjct: 442  GGVSDEGVAH----AGLDMRDPRLAKALELTRELTGFPRHLSQHTGGFVITRERLDEVVP 497

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +           +++   ++  G++K D L L  LT ++K L  LA+R  V   LS IP 
Sbjct: 498  LAPAAMEGRTTIEWDKDDLDALGILKIDVLALGMLTCMRKGLSLLAERYGVVHRLSTIPA 557

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            ++   Y +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  Y
Sbjct: 558  EEKCVYDMISRADTIGVFQIESRAQMSMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPY 617

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R+ GKEK+      ++  L +T GV ++QEQ M+IA +  G++  EAD LRRAM   K
Sbjct: 618  LRRRTGKEKVSYPSKELEQALGKTLGVPLFQEQAMRIAIVAGGFTPEEADRLRRAMATFK 677

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                +   +E+ +SG    G ++  A   +  +  F  YGF +SHAA++A++ Y +AW+K
Sbjct: 678  RVGTIGLFREKMLSGMVARGYARDFAERCWSQIEGFGSYGFPESHAASFALLVYASAWLK 737

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---------- 830
              YP  F  A +  +        +  +DA++  + +    VN    D  +          
Sbjct: 738  CRYPDVFCCALLNSQPMGFYAPAQIVRDAQEHGVGVHEVDVNFSDWDCTLTPRAGETRLH 797

Query: 831  -----------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                           +      I GV     R ++       +DS+ D   R +    + 
Sbjct: 798  PRHVAMAQDIRATQDVRLGFRQIVGVKEEDMRRLVARRGAG-YDSVRDLWLRGEL---SP 853

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
             VLE L  AGA    G  R   L ++  +         NR    +++       F+ +  
Sbjct: 854  AVLERLAEAGAFASLGLPRRDALWAVQGL---------NRVGDKDDLPLLRDLAFAPQEP 904

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNI 995
                           + R L      HP+   +  L   GI           +   G  +
Sbjct: 905  DAHLPPLPPGAEVIEDYRFLSLSLKAHPVAFLRQRLAAKGIVPCSALGGGPTSVRDGARV 964

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +A +V+ +Q+  +  G  + ++T  +         +P
Sbjct: 965  MVAGLVLVRQRPGSASG--VVFMTIEDETGVANIVVWP 1000


>gi|241518341|ref|YP_002978969.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM1325]
 gi|240862754|gb|ACS60418.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM1325]
          Length = 1099

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/1046 (26%), Positives = 468/1046 (44%), Gaps = 85/1046 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQV + +S L GA S + +          A+ + D N+L   +   + + A G++ 
Sbjct: 2    RYAELQVTTHFSFLRGASSADELFSTARELAIEALGVVDRNSLAGVVRALEASRATGVRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC                +       SI+L  +    Y RL  L++    L +G+   
Sbjct: 62   VVGC----------------RLDLQEGMSILLYPTDRGAYSRLTRLLT----LGKGRGGK 101

Query: 130  RICLSWLQE--IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              C+  L +  + +EGL+ +                 +    +L    ++F DR YV+L 
Sbjct: 102  ANCILNLDDVALYSEGLLAILVPDLAD----------ETCAVQLRKMAEIFEDRAYVSLC 151

Query: 188  -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
             R R  D+ R  ++  +A  H +  V TN+ LF      +  DV+  + ++T +     +
Sbjct: 152  LRRRPNDQLRLHELSNMAMRHRVRTVVTNDVLFHDPSRRQLQDVVTCIRNNTTIDDVGFK 211

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 D YLK   EM  +F   PEAL  T+EI  RC F L+      P    +E     K
Sbjct: 212  RERHADRYLKPPEEMERLFPRYPEALARTMEIVDRCRFSLEELTYQYP----EEAILPDK 267

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L +     +  R  +G         +  + +  EL++I  MK++ YFL V   ++
Sbjct: 268  TPQESLEHYVWECVPNRYPEGL------PPEVLKIVRHELDLIRTMKYAPYFLTVFSIVR 321

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +
Sbjct: 322  FARSQGI-LCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHE 380

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+++   YG ++ A   T    +AK A+RDVG+AL +P   +  L   +      
Sbjct: 381  RREEVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLPEDLIKALSTGMWAWSEE 440

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             VS +++ D    +     D  +   L ++Q+L G  RH   H  G V+    L  LVP+
Sbjct: 441  LVSDRSLRD----QGLNPQDRRLALTLRLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPI 496

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
                  D  V +++   +E    +K D L L  LT + K+   + +     +DL+ IP +
Sbjct: 497  EPAAMVDRQVIEWDKDDVEALKFMKVDILALGMLTCMAKAFALIEEHKDEHLDLATIPQE 556

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y 
Sbjct: 557  DQATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVIQVAIVRPGPIQGDMVHPYL 616

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+ GKE++V   P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M   K 
Sbjct: 617  RRREGKERVVYPTPELEAVLGKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATFKF 676

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               + + K++ +SG  +NG +   A   F  L  F  YGF +SHAA++A+I+Y + ++K 
Sbjct: 677  TGGVSRFKDKLVSGMIRNGYTAEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYVKC 736

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRI 835
            H P  F AA +  +        +    AR   ++I P  +N    D  +        + +
Sbjct: 737  HCPDVFCAALLNSQPMGFYAAAQIVGCARNHGVEIRPICINNSRWDCTLERIGDTDHHAV 796

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               +  ++G+    A  +  A  D+PF+S++D   R     +    L  L  A A     
Sbjct: 797  RLGMRMVRGLAAADAARVAAARMDQPFESVDDMWRR---SGVPAASLVELAEADAF---- 849

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--------KGTFSDKITLEKFSVEN 947
                  L SL   ++ A W  K   ++   +FA                ++ L + +  +
Sbjct: 850  ------LPSLGLQRRDALWAIKALRDEPLPLFAAASEREARAIAEQQEPEVALRQMTDGH 903

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            + V    +   +G     HP+   +  L +  I    +++    G  +  A +V+ +Q+ 
Sbjct: 904  NVV---QDYSHIGLTLRQHPVAFLRKALAERQIVTCAQAMNARDGRWLMTAGLVLVRQRP 960

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + KG  + ++T  +         +P
Sbjct: 961  GSAKG--VIFMTIEDETGPANVVVWP 984


>gi|241896302|ref|ZP_04783598.1| DNA-directed DNA polymerase III, alpha chain [Weissella
            paramesenteroides ATCC 33313]
 gi|241870463|gb|EER74214.1| DNA-directed DNA polymerase III, alpha chain [Weissella
            paramesenteroides ATCC 33313]
          Length = 1122

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/1031 (29%), Positives = 501/1031 (48%), Gaps = 54/1031 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQ  +++SLL   ++   ++  +      A+A+TD N L+   +F Q A AA IQPI+
Sbjct: 2    VPLQTMTAFSLLRSPMTPQQLIKAVQDKGYQAVALTDYNVLYGMYDFYQAAQAADIQPIL 61

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G                          ++ LV    GY  L+++ S +   ++     ++
Sbjct: 62   GLT-----------AELIGLQSSQSYPVIFLVENQVGYHNLLQISSAINTQNE-----KM 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             L  L+   +   I+L   S G +  A    +       L+       D  +V L     
Sbjct: 106  TLDDLKSYLSGLYIIL--PSIGEL--AVLLGTEPERAMTLVKTVTALADATHVFLGVSLD 161

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250
                    + +LA      ++A  N L+ +  D  +  V+  +    ++S     +    
Sbjct: 162  MREAMLQSIKELAQNTGTRIIANENVLYPNASDQFSAQVIQKLGQGEIISNVGLAQKQAA 221

Query: 251  DHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              YLK  ++  + +    L +A+ENT  IA     +L+  +  +P++   +     +   
Sbjct: 222  TAYLKESTDWANEYNSRGLSDAVENTDWIAAHSYVVLEQSSVTVPKYETPQG----QSSS 277

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L   A  GL  RL   A+     A  Y+ RL  EL +I  + F+ YFLIV D + +A 
Sbjct: 278  DYLAELATTGLTNRLHDMAVD----ATPYKARLKEELRIINELGFADYFLIVWDVLNYAH 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            K +I  GPGRGS AGS+ AY L ITD+DP+ + LLFERFLNP+R  MPD DID   +RR+
Sbjct: 334  KKSIRTGPGRGSAAGSLVAYVLWITDVDPIAYDLLFERFLNPERHQMPDIDIDIPDNRRE 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E++ Y+   YGHERVAQIITF ++  +A +RDV R   +  +Q+D L K +P       S
Sbjct: 394  EILDYLHEHYGHERVAQIITFSTMAQRAVIRDVARVFGLNPTQIDNLSKSMPRG---TAS 450

Query: 489  LQAIADDS-RFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            LQA  + S  FR A L  P   +LL + + KLEGL R+AS HAAG+V+   PL+  +P+ 
Sbjct: 451  LQASYESSLPFRNALLDLPVDGQLLYQTALKLEGLPRNASLHAAGVVLSAEPLANYMPVQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ--RGVKVDLSLIPFD 604
                    VTQ     +E  GL+K DFL L  L +L  ++  + +        ++ +  D
Sbjct: 511  LG-DDGRLVTQLPKGPVEALGLLKMDFLALSNLNILDIAIREIQKIPDHESFSIASVSLD 569

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  T  L     T G+FQ ES GM+  L  ++PD  EDI+A  +L+RPGP+ NI  +  R
Sbjct: 570  DQATLRLFQNGLTNGVFQFESGGMKNILRQLRPDSFEDIVAANALFRPGPMQNIPHFVAR 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+ +EK       +  +L  T G+I+YQEQVM++A+  +G+SL EAD+LRRAM KK  ++
Sbjct: 630  KHQEEKQDVPDASMAEILAPTYGIIVYQEQVMRVAERFAGFSLGEADLLRRAMSKKDHDK 689

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +   + +FI GA      + +A  +F  +  FA YGFN+SHA AY+ +++Q A++K HYP
Sbjct: 690  IAAMQSKFIDGAVGRHHDQQVAEQVFSYIETFAQYGFNRSHAVAYSKLAFQLAYIKAHYP 749

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIK 843
              F  A +   + + +K+  +  +A+  ++ I+ PS+N     + +         LA+I 
Sbjct: 750  AAFYKAVLNDSIADHKKVGIYIAEAKLSHVTILRPSLNHSWQGYSMNKQGELQMGLASIS 809

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            G+       +++   +   +  L +F  R+ SK      LE L++AGALD FG++R  LL
Sbjct: 810  GLRRDFREALIQERQEGGQYRDLTNFIGRLPSKYRKVSQLEPLIYAGALDEFGFNRKTLL 869

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             S+                +  ++F       S    + + +    + +   E   LG Y
Sbjct: 870  GSMQGYIDAV-----GLAGESISLF------ESLTPKMHEVAEFPLNEKLGYEHEYLGVY 918

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             SGHP++ Y   + +            +   ++ +   V + ++ +T+KG  + +V   +
Sbjct: 919  LSGHPIEPYLAAIPENRRTDIANLAVGM--TSVTVVIYVQNVKKIRTKKGDPMAFVDGID 976

Query: 1023 PAKEYEANFFP 1033
                     FP
Sbjct: 977  LTGTLSITIFP 987


>gi|285817385|gb|ADC37872.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981]
          Length = 1065

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/1031 (31%), Positives = 521/1031 (50%), Gaps = 95/1031 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L    +G + L +L S + +         +
Sbjct: 63   GMTIYVTNGLNTVET-------------VVLAKNNDGLKDLYQLSSEIKMNSMEN----V 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                LQ+  +  +I+             F N +      +  F                 
Sbjct: 106  SFELLQQFSSNLIII-------------FKNVADEHRDIVQVFDSH-------------- 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y + Q V +     +  V   N  + + +D +    L A+  +  +      +    
Sbjct: 139  EDTYLDHQSVLV---QGIKHVWIQNVCYQTRQDADTISALAAIRDNAKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +     E+  +  D+  E L     IA++C+  L+ H  +LP++     +         
Sbjct: 195  AHFLTEKEIKQL--DINQEYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDES-------- 244

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                A   L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N
Sbjct: 245  ----AKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTN 300

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ V
Sbjct: 301  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERV 360

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L 
Sbjct: 361  IQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLD 418

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +   
Sbjct: 419  EAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDT 478

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + +
Sbjct: 479  G--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILIQVKKDLGINIDIEKIPFDDQKVF 536

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   
Sbjct: 537  ELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPS 596

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ ++
Sbjct: 597  KVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESER 656

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A
Sbjct: 657  QHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYA 716

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  +
Sbjct: 717  NILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQS 776

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +
Sbjct: 777  VKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQV 836

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  +E++       +F       + K   E       ++  + E+  LGFY S HP+
Sbjct: 837  LDGDLNIEQD-----GFLF----DILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPV 887

Query: 969  D------VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            D       Y  I +    + Y+  +                 +Q +T+ G  + +VT ++
Sbjct: 888  DKKFVAKQYLTIFKLSNAQNYKPILVQFDK-----------VKQIRTKNGQNMAFVTLND 936

Query: 1023 PAKEYEANFFP 1033
              +  +   FP
Sbjct: 937  GIETLDGVIFP 947


>gi|15924693|ref|NP_372227.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            Mu50]
 gi|15927280|ref|NP_374813.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            N315]
 gi|148268182|ref|YP_001247125.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus JH9]
 gi|150394249|ref|YP_001316924.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus JH1]
 gi|156980020|ref|YP_001442279.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            Mu3]
 gi|255006487|ref|ZP_05145088.2| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            Mu50-omega]
 gi|257794087|ref|ZP_05643066.1| DNA polymerase subunit III [Staphylococcus aureus A9781]
 gi|258415791|ref|ZP_05682062.1| DNA polymerase subunit III [Staphylococcus aureus A9763]
 gi|258421972|ref|ZP_05684892.1| DNA polymerase subunit III [Staphylococcus aureus A9719]
 gi|258438270|ref|ZP_05689554.1| DNA polymerase subunit III [Staphylococcus aureus A9299]
 gi|258443728|ref|ZP_05692067.1| DNA polymerase subunit III [Staphylococcus aureus A8115]
 gi|258445939|ref|ZP_05694115.1| DNA polymerase subunit III [Staphylococcus aureus A6300]
 gi|258448381|ref|ZP_05696498.1| DNA polymerase subunit III [Staphylococcus aureus A6224]
 gi|258454139|ref|ZP_05702110.1| DNA polymerase subunit III [Staphylococcus aureus A5937]
 gi|282893197|ref|ZP_06301431.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8117]
 gi|282927832|ref|ZP_06335443.1| DNA polymerase subunit III, alpha [Staphylococcus aureus A10102]
 gi|295406012|ref|ZP_06815820.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8819]
 gi|296274871|ref|ZP_06857378.1| DNA polymerase III DnaE [Staphylococcus aureus subsp. aureus MR1]
 gi|297245062|ref|ZP_06928939.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8796]
 gi|54036991|sp|P63980|DPO3A_STAAN RecName: Full=DNA polymerase III subunit alpha
 gi|54040952|sp|P63979|DPO3A_STAAM RecName: Full=DNA polymerase III subunit alpha
 gi|13701498|dbj|BAB42792.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            N315]
 gi|14247475|dbj|BAB57865.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            Mu50]
 gi|147741251|gb|ABQ49549.1| DNA polymerase III catalytic subunit, DnaE type [Staphylococcus
            aureus subsp. aureus JH9]
 gi|149946701|gb|ABR52637.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus JH1]
 gi|156722155|dbj|BAF78572.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            Mu3]
 gi|257788059|gb|EEV26399.1| DNA polymerase subunit III [Staphylococcus aureus A9781]
 gi|257839384|gb|EEV63857.1| DNA polymerase subunit III [Staphylococcus aureus A9763]
 gi|257842016|gb|EEV66445.1| DNA polymerase subunit III [Staphylococcus aureus A9719]
 gi|257848314|gb|EEV72305.1| DNA polymerase subunit III [Staphylococcus aureus A9299]
 gi|257851134|gb|EEV75077.1| DNA polymerase subunit III [Staphylococcus aureus A8115]
 gi|257855181|gb|EEV78120.1| DNA polymerase subunit III [Staphylococcus aureus A6300]
 gi|257858349|gb|EEV81234.1| DNA polymerase subunit III [Staphylococcus aureus A6224]
 gi|257863591|gb|EEV86348.1| DNA polymerase subunit III [Staphylococcus aureus A5937]
 gi|282590342|gb|EFB95421.1| DNA polymerase subunit III, alpha [Staphylococcus aureus A10102]
 gi|282764515|gb|EFC04641.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8117]
 gi|294969009|gb|EFG45030.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8819]
 gi|297178142|gb|EFH37390.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8796]
 gi|312830081|emb|CBX34923.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            ECT-R 2]
 gi|315130663|gb|EFT86649.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            CGS03]
 gi|329727251|gb|EGG63707.1| putative DNA polymerase III subunit alpha [Staphylococcus aureus
            subsp. aureus 21172]
          Length = 1065

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/1031 (31%), Positives = 521/1031 (50%), Gaps = 95/1031 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L    +G + L +L S + +         +
Sbjct: 63   GMTIYVTNGLNTVET-------------VVLAKNNDGLKDLYQLSSEIKMNSMEN----V 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                LQ+  +  +I+             F N +      +  F                 
Sbjct: 106  SFELLQQFSSNLIII-------------FKNVADEHRDIVQVFDSH-------------- 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y + Q V +     +  V   N  + + +D +    L A+  +  +      +    
Sbjct: 139  EDTYLDHQSVLV---QGIKHVWIQNVCYQTRQDADTISALAAIRDNAKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +     E+  +  D+  E L     IA++C+  L+ H  +LP++     +         
Sbjct: 195  AHFLTEKEIKQL--DINQEYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDES-------- 244

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                A   L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N
Sbjct: 245  ----AKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTN 300

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ V
Sbjct: 301  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERV 360

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L 
Sbjct: 361  IQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLD 418

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +   
Sbjct: 419  EAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDT 478

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + +
Sbjct: 479  G--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILIQVKKDLGINIDIEKIPFDDQKVF 536

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   
Sbjct: 537  ELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPS 596

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ ++
Sbjct: 597  KVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESER 656

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A
Sbjct: 657  QHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYA 716

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  +
Sbjct: 717  NILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQS 776

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +
Sbjct: 777  VKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQV 836

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  +E++       +F       + K   E       ++  + E+  LGFY S HP+
Sbjct: 837  LDGDLNIEQD-----GFLF----DILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPV 887

Query: 969  D------VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            D       Y  I +    + Y+  +                 +Q +T+ G  + +VT ++
Sbjct: 888  DKKFVAKQYLTIFKLSNAQNYKPILVQFDK-----------VKQIRTKNGQNMAFVTLND 936

Query: 1023 PAKEYEANFFP 1033
              +  +   FP
Sbjct: 937  GIETLDGVIFP 947


>gi|206559167|ref|YP_002229927.1| error-prone DNA polymerase [Burkholderia cenocepacia J2315]
 gi|198035204|emb|CAR51078.1| error-prone DNA polymerase [Burkholderia cenocepacia J2315]
          Length = 1070

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/1049 (25%), Positives = 452/1049 (43%), Gaps = 68/1049 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA   + ++++        IAITD  +L  A      A A G+ 
Sbjct: 8    PDYAELFCRSNFSFLHGASHADELVERAVKLGYRGIAITDECSLAGAPRMHVAAKANGLP 67

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +IG   D+   D       G  P P    +VLL    EGY  L EL+S   +    K +
Sbjct: 68   LVIGSYFDVTPDD----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISWRRMASP-KGT 122

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             ++    L     E   +        I    +   + V + ++  F+  FG+R  + L Q
Sbjct: 123  YQLTSRMLSAPPAEFAHLRGMPDCFAILVPTYPVRADVLDAQVAWFRATFGERARLGLVQ 182

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D  +  ++ +      + LVA  +            DV+ A+     VS+     
Sbjct: 183  LQRALDGAQRDEIREAGKRRGVRLVALGDVTMHVRSCKPLQDVMTAIRVGMPVSECGYAL 242

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  +  +FS     +  T  +   C F L       P  I          
Sbjct: 243  APNAEQHLRSRGRIAKLFSSAE--IAETCAMFDACDFELDSLRYEYPDEIVPAG----LT 296

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L  +  AG  VR  QG   K        +++  EL++IAR+ +  +FL V D +++
Sbjct: 297  PTRYLEQETFAGAAVRYPQGIPEK------VDKQIRHELDLIARLSYEPFFLTVYDIVKY 350

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  NI +  GRGS A SV  Y L IT+++P + ++LFERF++ +R   PD D+DF   R
Sbjct: 351  ARSQNI-LCQGRGSAANSVVCYCLGITEVNPEQSTMLFERFISEERGEPPDIDVDFEHQR 409

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+++  KYG +R A      + + +  LR+ G+AL +    VDR+ K         
Sbjct: 410  REEVIQHIYAKYGKDRAALAAAVSTYRPRGVLRETGKALGVDPMLVDRVAKGHRWFDGSR 469

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L+  A            P +    E++ +L    RH S H+ G  I    L++LVP+ 
Sbjct: 470  DLLRQFASTG----LDPETPLIRTWAELAGRLLNFPRHLSQHSGGFAISRGKLTRLVPVE 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------AQRGVKVDLSL 600
                    V Q++   +E  GL+K D L L  L+ L ++ D        A+ G    L  
Sbjct: 526  NAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPAKDGKPFTLKH 585

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI-- 658
            IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI     
Sbjct: 586  IPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLKPRNYYDLVVQVSIVRPGPIQGGAV 645

Query: 659  VVYNNRKN---GKE--KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              Y  R+    G+E  ++      +  +L  T GV I+QEQVMQIA + +G++  EAD L
Sbjct: 646  HPYLQRRRIVAGEEEGEVTYPSDALKEVLVRTLGVPIFQEQVMQIAIVAAGFTPGEADDL 705

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM   K K  ++K +++ ISG  +   ++  A  IFE +  F +YGF +SHAA++A +
Sbjct: 706  RRAMAAWKRKGNLEKYQDKIISGMLERNYTREFAEQIFEQIKGFGEYGFPESHAASFAKL 765

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD----- 827
            +Y ++W+K H P  FLAA +  +        +  QDA++  ++++P  V     +     
Sbjct: 766  AYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHRVKVLPIDVTQSTWEAALEA 825

Query: 828  -----FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                    G   +   L+ ++G+    AR I  A A  PFD+++    R   ++  R + 
Sbjct: 826  LPDQPPPHGQPAVRLGLSLVRGLSEAAARRIEAARAAGPFDNVDTLARRAQLER--RDLE 883

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
                        G+ R  L Q++                   ++ A       D++    
Sbjct: 884  ALAAANALATLAGHRRDALWQAV-------------AAAPERDLLAAAP---IDEVEQPA 927

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                + +     +    G   + HP+ + +P LR   +    E      G   R   +V+
Sbjct: 928  LGAPSEADDILADYHTTGLTLNRHPVALLRPALRAQRLSSAAELRDRPDGRLARACGLVI 987

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            ++Q   T KG  + ++T  +         
Sbjct: 988  ARQMPGTAKG--VMFMTLEDETGCVNVIV 1014


>gi|223043605|ref|ZP_03613650.1| DNA polymerase III, alpha subunit [Staphylococcus capitis SK14]
 gi|222443093|gb|EEE49193.1| DNA polymerase III, alpha subunit [Staphylococcus capitis SK14]
          Length = 1067

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/1026 (31%), Positives = 535/1026 (52%), Gaps = 85/1026 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H++Y LL  +L + ++++K   +   A+AITDT+ L+   +F     A  I PI 
Sbjct: 3    AHLNIHTAYDLLNASLKIEDVVNKAKNEGYRALAITDTHVLYGFPKFYDACIAKDIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +        T             V+L    EG + L +L S + +    K+   +
Sbjct: 63   GMTISLTDGLYTVET-------------VVLAQNNEGLKALYQLSSAIKM----KEKEEV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             L WL+      +I+              F       K+++   + F D+++V +  H  
Sbjct: 106  PLEWLKRYDKNLIII--------------FKDIDNTHKQII---EAFNDKIHVYI-NHTS 147

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D     +            V   ++ +L+ ED +    L A+  ++ +   +  +   +
Sbjct: 148  NDIVNRKK------------VWLKSARYLNREDADTISALQAIKDNSKLDIINDSKDFGE 195

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            H   ++ E   +  D  +  +NT +I   C   L  H  +LP+++  + +  +    + L
Sbjct: 196  H-FPDQKEFEELEID-EKIKQNTEDIVDLCKAELVYHQSLLPQYVTPDGEVSKDYLWSVL 253

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
              K                  + + Y  RL  E  +I +M F  YFLIV+D I +AK ++
Sbjct: 254  IRKLNEW------------NLNNEQYLNRLKHEYEIITKMGFEDYFLIVSDLIHYAKTHD 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLEITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     ++L  
Sbjct: 362  QYVQEKYGELHVSGIVTFGHLLARAVGRDVGRIMGFDETTLNEISKLIPHKLG--ITLDK 419

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  F+     +   +   E+S+KLEGL RH STHAAGI+I D+PL +  P+      
Sbjct: 420  AYQEEDFKSFVHRNHRNELWFEMSKKLEGLPRHTSTHAAGIIINDQPLYKYAPLTLGDTG 479

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + ++ + +   V +D+  IPFDD   + 
Sbjct: 480  --LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIVNQVKKDLDVDIDVEAIPFDDKNVFK 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++   K
Sbjct: 538  LLSQGDTTGIFQLESEGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSK 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +H  ++ +LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++
Sbjct: 598  VEYLHNDLESILKSTYGVIIYQEQIMQIASKFANFSYGEADILRRAMSKKNRAVLENERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA +NG ++ I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K +YP  F A 
Sbjct: 658  HFVNGAKQNGYNEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVYYPNYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K      +A+   + I+PP++N     +K     IY SL AIKGVG  + 
Sbjct: 718  ILSNVIGSEKKTSAIIDEAKHQKLNILPPNINESHWYYKATTKGIYLSLGAIKGVGYQSV 777

Query: 851  RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I++    +  F    DF  R+  +  +R++LE+L+  GA D FG +R  LLQ++D + 
Sbjct: 778  KTIVDERYNNGKFKDFFDFTRRIPKRVKSRKLLEALILVGAFDHFGKNRATLLQTIDQVL 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
              A  VE++     + +F       + K   E        +  + E+  LGFY S HP++
Sbjct: 838  DTASDVEQD-----DMLF----DILTPKQAYEDKEELPDKMLSDYEKEYLGFYISKHPVE 888

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMV--VSKQQKKTRKGSRIGWVTFSEPAKEY 1027
                   K    G  +         I    +V   + +Q +T+ G  + +VT ++     
Sbjct: 889  ---KEFDKKQYLGIYKLGNAQNHQPI----LVHFDAIKQIRTKNGQNMAFVTLNDGMLLM 941

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 942  DGVIFP 947


>gi|319948757|ref|ZP_08022877.1| error-prone DNA polymerase [Dietzia cinnamea P4]
 gi|319437590|gb|EFV92590.1| error-prone DNA polymerase [Dietzia cinnamea P4]
          Length = 1049

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/1050 (27%), Positives = 470/1050 (44%), Gaps = 84/1050 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  H+++S L+GA S   + +  A     A+AITD + L+  + F++ A   G+  
Sbjct: 2    PYAELHAHTAFSFLDGASSPEAMAEAAAELGLTALAITDHDGLYGVVRFAEAASELGLAT 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + G                 +   P    +++L    EGY+RL   ++R +L    K   
Sbjct: 62   VFGA----------------ELSLPGGEHLLVLARGQEGYRRLSRAIARAHLRGGAKGEP 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-------SSQVAEKRLLTFKKLF-GDR 181
            R  ++ L E       +LTG   G + RA            ++ A   L    +LF  DR
Sbjct: 106  RYEITELAEAAGGHWYVLTGCRRGRVRRALERGGTGGPDFDTEAARTALEQLVELFGRDR 165

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTV 239
            + V L  H    D  R   +  LA    LP+VAT  +     E      V+ A+ A   +
Sbjct: 166  VVVELTCHGVPEDTERCDALAGLAARAGLPVVATTAAHCAGPEGARLASVMAALGARDAL 225

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +           +L++  EM  +F   P+A+     + R C+F L++ AP LP F   E
Sbjct: 226  ETHAAHLPAAGGAHLRSGEEMADLFDRWPDAVAGADRLGRECAFDLRLIAPQLPPFDVPE 285

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E+  L   A AG   R       +    + Y  ++  EL VIA + F GYFL+
Sbjct: 286  G----HTEDTMLAELAYAGAARRYG----TREEMPEAY-AQIGRELKVIAELGFPGYFLV 336

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++ ++  I +  GRGS A S   Y+L IT++DP+R  LLFERFL P+R   PD D
Sbjct: 337  VHDIVEFCRREGI-LCQGRGSAANSAVCYSLGITNVDPVRAQLLFERFLAPERDGPPDID 395

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +D    RR+E I+YV ++YG +  AQ+    + + ++A+RDV RAL     Q D   K +
Sbjct: 396  VDIESGRREEAIQYVYSRYGRDYAAQVANVITYRGRSAVRDVARALGYSPGQQDAWSKSV 455

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                          + +              +L ++++L GL RH   H+ G+VI DRP+
Sbjct: 456  DRWSGLKNHEGEATEHT----------VPPDVLALARQLVGLPRHLGIHSGGMVICDRPV 505

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
            + +VP+         V Q++       GL+KFD LGL  LT L  ++D  A+   + VDL
Sbjct: 506  ADVVPVEWARMPGRTVLQWDKDDCAAVGLVKFDMLGLGMLTALHHAIDLAAEHKDLDVDL 565

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +   D + Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   
Sbjct: 566  AKLDLADPQVYEMLCRGDSVGVFQVESRAQMATLPRLRPRTFYDLVVEVALIRPGPIQGG 625

Query: 659  --VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
                Y  R+NG+EK+   HP ++ +L  T G+ ++QEQ+MQIA +++G++ +EAD LRRA
Sbjct: 626  SVHPYIRRRNGREKVEFDHPALEEVLGRTLGIPLFQEQLMQIATVIAGFTGAEADQLRRA 685

Query: 717  M-GKKIKEEMDKQKERFISGASK-NGI----------SKTIAVNIFELLAKFADYGFNKS 764
            M  K+  E M + KERF +G  + +GI             +   I+E +  FA+YGF +S
Sbjct: 686  MGAKRSPERMARLKERFFAGMRELHGIGTSPPGTPYTGPEVGERIWEKMCAFANYGFPES 745

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+ ++A I Y +AW K H+P  F AA +  +       +    DAR+  + +  P VN  
Sbjct: 746  HSQSFAAIVYYSAWFKCHHPAIFCAALLRSQPMGFYSPQSLVADARRHGVTVHRPCVNRS 805

Query: 825  --CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881
                  +     +   L +++ +G   A  I +   +  P+ S  D   R     L+ R 
Sbjct: 806  LGGATCENDGTEVRLGLESVRAIGEDLATAIADERDSHGPYTSAADLAGRT---GLSVRQ 862

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            +E+L  AGALD  G             ++ A W       +   +          ++   
Sbjct: 863  MEALATAGALDSLGT----------GGRRAALWSAATAAREKPGMLPGLS-----QVDAP 907

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                 +       +    G     +P    +P L   G+           G+ IR+A  V
Sbjct: 908  ALPGMSLLELTSADLAATGISPEEYPTVHARPWLDSQGVCTTAGLAHVPDGSRIRVAGAV 967

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
              +Q+  T +G  + +++  +         
Sbjct: 968  THRQRPATAEG--VTFLSLEDETGMTNIVC 995


>gi|269203340|ref|YP_003282609.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus ED98]
 gi|262075630|gb|ACY11603.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus ED98]
          Length = 1065

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/1031 (31%), Positives = 522/1031 (50%), Gaps = 95/1031 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L    +G + L +L S + +         +
Sbjct: 63   GMTIYVTNGLNTVET-------------VVLAKNNDGLKDLYQLSSEIKMNSMEN----V 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                LQ+  ++ +I+             F N +      +  F                 
Sbjct: 106  SFELLQQFSSDLIII-------------FKNVADEHRDIVQVFDSH-------------- 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y + Q V +     +  V   N  + + +D +    L A+  +  +      +    
Sbjct: 139  EDTYLDHQSVLV---QGIKHVWIQNVCYQTRQDADTISALAAIRDNAKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +     E+  +  D+  E L     IA++C+  L+ H  +LP++     +         
Sbjct: 195  AHFLTEKEIKQL--DINQEYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDES-------- 244

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                A   L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N
Sbjct: 245  ----AKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTN 300

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ V
Sbjct: 301  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERV 360

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L 
Sbjct: 361  IQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLD 418

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +   
Sbjct: 419  EAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDT 478

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + +
Sbjct: 479  G--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILIQVKKDLGINIDIEKIPFDDQKVF 536

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   
Sbjct: 537  ELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPS 596

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ ++
Sbjct: 597  KVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESER 656

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A
Sbjct: 657  QHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYA 716

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  +
Sbjct: 717  NILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQS 776

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +
Sbjct: 777  VKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQV 836

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  +E++       +F       + K   E       ++  + E+  LGFY S HP+
Sbjct: 837  LDGDLNIEQD-----GFLF----DILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPV 887

Query: 969  D------VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            D       Y  I +    + Y+  +                 +Q +T+ G  + +VT ++
Sbjct: 888  DKKFVAKQYLTIFKLSNAQNYKPILVQFDK-----------VKQIRTKNGQNMAFVTLND 936

Query: 1023 PAKEYEANFFP 1033
              +  +   FP
Sbjct: 937  GIETLDGVIFP 947


>gi|283470969|emb|CAQ50180.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            ST398]
          Length = 1065

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/1024 (31%), Positives = 519/1024 (50%), Gaps = 81/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L     G + L +L S + +         +
Sbjct: 63   GMTIYVTNGLNTVET-------------VVLAKDNNGLKDLYQLSSEIKM----NALEHV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L+      +I+             F N +      +  F                 
Sbjct: 106  SFELLKRFSNNMIII-------------FKNVADEHRDIVQVFDSH-------------- 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y + + V +     +  V   +  + +  D +    L A+  +T +      +    
Sbjct: 139  EDTYLDHRSVLV---QGIKHVWIQDVCYQTRHDADTISALAAIRDNTKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +    +E+  +    PE       IA++C   L+ H  +LP++     +  +K      
Sbjct: 195  AHFLTENEIQQL-DVNPEYFTQADRIAQKCDAELKYHQSLLPQYQAPNDESAKKY----- 248

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                   L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N+
Sbjct: 249  -------LWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTND 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L  
Sbjct: 362  QYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDE 419

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +    
Sbjct: 420  AYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG 479

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + 
Sbjct: 480  --LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFE 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K
Sbjct: 538  LLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSK 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++
Sbjct: 598  VQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A 
Sbjct: 658  HFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + 
Sbjct: 718  ILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSV 777

Query: 851  RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+E    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D + 
Sbjct: 778  KVIVEERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVL 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 +E++       +F       + K   E       ++  + E+  LGFY S HP+D
Sbjct: 838  DGDLNIEQD-----GFLF----DILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD 888

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              K  + K  +  ++          I +       +Q +T+ G  + +VT ++  +  + 
Sbjct: 889  --KKFVAKQYLTIFK-LSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDG 943

Query: 1030 NFFP 1033
              FP
Sbjct: 944  VIFP 947


>gi|82751290|ref|YP_417031.1| DNA polymerase III alpha subunit [Staphylococcus aureus RF122]
 gi|82656821|emb|CAI81250.1| DNA polymerase III alpha subunit [Staphylococcus aureus RF122]
          Length = 1065

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/1025 (31%), Positives = 524/1025 (51%), Gaps = 83/1025 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVEALAITDTNVLYGFPKFYDACIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L     G + L +L S++ +         +
Sbjct: 63   GMTIYVTNGLNTIET-------------VVLAKDNNGLKDLYQLSSKIKMNSMEN----V 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                LQ+  +  +I+             F N +      +  F                 
Sbjct: 106  SFELLQQFSSNLIII-------------FKNVADEHRDIVQDFDSH-------------- 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y + + V +     +  V   N  + + +D +    L A+  +T +      +    
Sbjct: 139  EDTYLDHRSVLV---QGIKHVWIQNVCYQTRQDADTISALAAIRDNTKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +     E+  +  D+  E L     IA++C+  L+ H  +LP++     +         
Sbjct: 195  AHFLTEKEIKQL--DINQEYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDES-------- 244

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                A   L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N
Sbjct: 245  ----AKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKMN 300

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ V
Sbjct: 301  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERV 360

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L 
Sbjct: 361  IQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLD 418

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +   
Sbjct: 419  EAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDT 478

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + +
Sbjct: 479  G--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVF 536

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   
Sbjct: 537  DLLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPS 596

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ ++
Sbjct: 597  KVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESER 656

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A
Sbjct: 657  QHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYA 716

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + + +K  +  ++A++ +I I+PP++N     +K     IY S+  IKGVG  +
Sbjct: 717  NILSNVIGSEKKTAQMIEEAKKQSITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQS 776

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +
Sbjct: 777  VKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQV 836

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  +E++       +F       + K   E       ++  + E+  LGFY S HP+
Sbjct: 837  LDGDLNIEQD-----GFLF----DILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPV 887

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            D  K  + K  +  ++          I +       +Q +T+ G  + +VT ++  +  +
Sbjct: 888  D--KKFVAKQYLTIFK-LSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLD 942

Query: 1029 ANFFP 1033
               FP
Sbjct: 943  GVIFP 947


>gi|259500669|ref|ZP_05743571.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus iners
            DSM 13335]
 gi|302191358|ref|ZP_07267612.1| DNA polymerase III, alpha subunit [Lactobacillus iners AB-1]
 gi|259168053|gb|EEW52548.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus iners
            DSM 13335]
          Length = 1040

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/1028 (31%), Positives = 525/1028 (51%), Gaps = 46/1028 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+  +S+  ++D        AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6    LQNISSFTLLKSPISIEQLIDSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            Q          +   G         ++++     GYQ ++ L S + L  + GK+ + + 
Sbjct: 66   Q----------LRINGLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
            L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116  LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
                Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +       +  
Sbjct: 175  SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDVFLQEVLQSIDDNQSIRDGYELTLKH 233

Query: 250  -PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +HYLK + ++   ++ L   EAL NT ++    +  ++   P LP+FI+ + D     
Sbjct: 234  VGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD----T 289

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L + A+ GL+ +       K      Y  RL +EL +I  M F+ YFLIV D I +
Sbjct: 290  SYEFLHHLAMTGLQAKF-----NKHDIPAKYLNRLKYELKIIDEMGFNDYFLIVWDVINY 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
                 I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   +R
Sbjct: 345  CHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPDNR 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       ++   K IP   +  
Sbjct: 405  RNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKSKI 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V + 
Sbjct: 465  TLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQ 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                  +PVTQ   K++E  GL+K DFLGL  LT+L  + + +   G+K+D+  IP DD 
Sbjct: 525  NGSL-GIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNAFNEVKMSGIKLDMDKIPLDDP 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  RKN
Sbjct: 584  ATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +EK+V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   EM 
Sbjct: 644  KEEKVVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSMEMK 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K    F++ A + G S + A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP +
Sbjct: 704  KIGVDFVNRAVQQGHSASAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQ 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY-SLAAIKGV 845
            F  A +   + + +K+ K+  D +  NI+I  P +N    +F + D       L +I G+
Sbjct: 764  FYVALLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSIIGL 823

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                   IM     +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL S 
Sbjct: 824  RMDFVEQIMN--LQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLASY 881

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +++      +    +  +  +F   +    D        + +++ + E E  VLGF    
Sbjct: 882  EDLL-----ICIKMSGGNNVLFQALEPKELD------IKMPSNAQKEEWETSVLGFSPQI 930

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             P+   +   +K G K + +      G ++     ++  +   T+   ++ +  F++  +
Sbjct: 931  DPILAAQIYAKKYGFKPFSDFTFYDEGVSV---GKMMDIKVITTKNNKKMAFAKFNDLHE 987

Query: 1026 EYEANFFP 1033
              +   FP
Sbjct: 988  TVDFVIFP 995


>gi|323442993|gb|EGB00615.1| DNA polymerase III alpha subunit [Staphylococcus aureus O46]
          Length = 1065

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1025 (31%), Positives = 517/1025 (50%), Gaps = 83/1025 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+    F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPRFYDACIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L     G + L +L S++ +         +
Sbjct: 63   GMTIYVTNGLNTIET-------------VVLAKDNNGLKDLYQLSSKIKMNSIEN----V 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                LQ+  +  +I+             F N +      +  F                 
Sbjct: 106  SFELLQQFSSNLIII-------------FKNVADEHRGIVQVFDSH-------------- 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y + + V +     +  V      + + +D +    L A+  +T +      +    
Sbjct: 139  EDTYLDHRSVLV---QGIKHVWIQTVCYQTPQDADTISALAAIRDNTKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +     E+  +  D+  E L     IA++C+  L+ H  +LP++     +         
Sbjct: 195  AHFLTEKEIKQL--DINQEYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDES-------- 244

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                A   L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N
Sbjct: 245  ----AKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTN 300

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ V
Sbjct: 301  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERV 360

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L 
Sbjct: 361  IQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLD 418

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +   
Sbjct: 419  EAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDT 478

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + +
Sbjct: 479  G--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVF 536

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   
Sbjct: 537  DLLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPS 596

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ ++
Sbjct: 597  KVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESER 656

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A
Sbjct: 657  QHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYA 716

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  +
Sbjct: 717  NILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSKEGIYLSIGTIKGVGYQS 776

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +
Sbjct: 777  VKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQV 836

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  +E++       +F       + K   E       ++  + E+  LGFY S HP+
Sbjct: 837  LDGDLNIEQD-----GFLF----DILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPV 887

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            D    +          +         I +       +Q +T+ G  + +VT ++  +  +
Sbjct: 888  D---KMFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLD 942

Query: 1029 ANFFP 1033
               FP
Sbjct: 943  GVIFP 947


>gi|145595754|ref|YP_001160051.1| error-prone DNA polymerase [Salinispora tropica CNB-440]
 gi|145305091|gb|ABP55673.1| DNA polymerase III, alpha subunit [Salinispora tropica CNB-440]
          Length = 1124

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/1051 (27%), Positives = 461/1051 (43%), Gaps = 81/1051 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  H+++S L+GA     + ++       A+A+TD +  +  + F++ A A  +  
Sbjct: 73   PYAELHTHTNFSFLDGASHPEELAEEAVRLGLTALAVTDHDGFYGVVRFAEAARALHLPT 132

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + G +L +D+            P P    ++LL    EGY RL   +SR  L    K   
Sbjct: 133  VFGAELSLDLPG-----APNGEPDPLGRHLLLLAHGHEGYARLAATISRAQLRGGEKGRP 187

Query: 130  RI-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
                L+ +     + +++LTG   G +  A        A + L     LF  + + V L 
Sbjct: 188  IYGELAEVAAELRDHVLVLTGCRKGHVPAALLTEGVDAAARELDRLTALFGAETVAVELT 247

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDR 245
             H    D  R   + +LA    LP VATNN  + +         L AV     + +    
Sbjct: 248  DHGHPIDADRNDALAELAEAAGLPTVATNNVHYATPGRRRLATTLAAVRARRSLDEIDGW 307

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                   +L++ +EM + F+  P A+    E     +F LQ+ AP LP +          
Sbjct: 308  LPAAGAAHLRSGAEMAARFAAYPGAVARAAEFGAELAFDLQLVAPALPAYPVASG----H 363

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E + LR+    G   R          H + Y  +L+ ELN+I  + F GYFL+V D + 
Sbjct: 364  TEMSWLRHLTARGARERYG----PPEAHPEAY-AQLEHELNMIEELGFPGYFLVVYDIVT 418

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            + ++ +I    GRGS A S   YAL IT++D +R  LLFERFL P+R   PD D+D    
Sbjct: 419  FCREQDI-YCQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVDIESS 477

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI++V  +YG E  AQ+    S + ++A+RDV +A      Q D   K I    + 
Sbjct: 478  RREEVIQHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQIDRWGSV 537

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                 A AD     E          ++  +  ++   RH   H+ G+VI DRP+ ++ P+
Sbjct: 538  -----AAADVEGIPEP---------VVAYADAVQTFPRHLGIHSGGMVICDRPVIEVCPV 583

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                     V Q++       GL+KFD LGL  L  L    D +  R   ++L  +  DD
Sbjct: 584  EWGRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLAALHHGYDMIGAR---LELGDMTLDD 640

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
             E Y +L     +G+FQ+ES      L  ++P C  D++  V+L RPGPI       Y  
Sbjct: 641  DEVYDMLCRADAVGVFQVESRAQMATLPRLKPRCFYDLVVEVALIRPGPIQGGSVHPYIR 700

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            RKNG+E +   HPL+   L++T GV ++QEQ+MQ+A  L+G+  +EAD LRRAM  K+  
Sbjct: 701  RKNGQEPVTFPHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAEADQLRRAMGAKRSA 760

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E M +  +R  +G ++ GI+  +A +++  L  FA YGF +SHA ++A + Y ++W+K +
Sbjct: 761  ERMARIADRLYAGMAERGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASSWLKRY 820

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--------------- 827
            +P  FLAA +  +       +    DAR+  +++  P VN                    
Sbjct: 821  HPAPFLAALLNAQPMGFYSPQTLVDDARRHGVEVRRPDVNASGAGAVLESTPSTRWGSQP 880

Query: 828  ------FKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRR 880
                  + +G   +   L +++ +G   A  I  E +A  P+  + D   RV        
Sbjct: 881  GEPPHAWGLGGPAVRLGLDSVRTLGGEVAGRIETERAARGPYRDMSDLARRVGLTA---A 937

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE+L  A A  CFG +R Q L S       A     +R      +     GT +   TL
Sbjct: 938  QLEALATADAFACFGVTRRQALWSAG----AAAQEHPDR------LPGTVPGTVA--PTL 985

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                  +   R   +    G     HP    +  L  +G            G  +R+  +
Sbjct: 986  PGMGAVD---RLVADVWATGLSPESHPARFVREQLDALGAVPIARLARVEPGRRVRVGGI 1042

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            V  +Q+  T  G  + ++   +         
Sbjct: 1043 VTHRQRPATAGG--VTFLNLEDETGMLNVTC 1071


>gi|116492856|ref|YP_804591.1| DNA polymerase III catalytic subunit, DnaE type [Pediococcus
            pentosaceus ATCC 25745]
 gi|116103006|gb|ABJ68149.1| DNA polymerase III catalytic subunit, DnaE type [Pediococcus
            pentosaceus ATCC 25745]
          Length = 1107

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1012 (29%), Positives = 519/1012 (51%), Gaps = 49/1012 (4%)

Query: 27   LSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMT 86
            + +++++         A+ +TD N ++  +EF Q      ++PI+G  L +D        
Sbjct: 19   IKIDDLIATAKNRGYQAMTLTDHNTMYGTVEFYQACIKNNLKPIVGLTLWLD-------- 70

Query: 87   NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146
                T      ++VL+  + +GY+ L+++ S        K    +       +    +I+
Sbjct: 71   --STTGIDNQFALVLIAKSVKGYRNLMQISSAKMTSSTPKF---VFDDIKDLLDDLIMIV 125

Query: 147  LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRHRGYDRYRESQVVQLAY 205
                    +        S  A + L  ++++ GD  LY+ +  +          ++Q+A 
Sbjct: 126  --PAQRSEMIELLERGLSGDATELLENYRQVVGDEDLYLGI--NLKQTNIMRQTLMQIAE 181

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIF 264
             H L  +   +  +L+ ED+ A  VL  +A   V+   +   +   +++LK R      +
Sbjct: 182  KHSLGCLPLPSVEYLNSEDHFATQVLKDIASGEVIKHPEILAKDQGNNWLKPRDVFEKEY 241

Query: 265  SD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
             D  L E L+    +  +    +    P LP+F         +     L+      LE  
Sbjct: 242  RDAGLSELLDQLDALTSQIELKIPFVQPKLPKFPTP----ANQSAIQYLKELCFQQLEK- 296

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                  +K      Y+QRLD ELNVI  M F+ YFLIV D +Q+A +N+I  GPGRGS A
Sbjct: 297  ------SKNAQNLQYQQRLDRELNVIESMGFADYFLIVHDVVQFAHQNHILTGPGRGSAA 350

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GS+ AY L IT +DP+ + LLFERFLNP+R  MPD D+D   D+R+ +++YV +KYGH+ 
Sbjct: 351  GSLVAYLLRITSVDPIEYGLLFERFLNPERAQMPDIDLDIPDDKRELMLKYVHDKYGHQH 410

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            V QIITFG+L AK A+RDV R      ++++++  LIP++    +  +A+ + S+ +E  
Sbjct: 411  VGQIITFGTLAAKQAIRDVARVFGEMPNKINQISALIPSELNITLE-RALENSSKLQEFI 469

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
                    + E +++LEGL RH STHAAGIV+ +  L++  P+  D    + ++Q++  +
Sbjct: 470  RTSEKNRFMFETARRLEGLPRHYSTHAAGIVLSENNLTETTPVQ-DGNEGMLMSQYSKNY 528

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            +E+ GL+K DFLGL+ L+L+   LD + Q     D+  I  +D +T  L     T GIFQ
Sbjct: 529  VERVGLLKMDFLGLRNLSLMANILDQVHQLKPDFDIENINLNDTKTLELFQRGDTSGIFQ 588

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
             ES+G+R  L  ++PD    ++A+ +LYRPGP++NI  +  RK  +E     + ++  +L
Sbjct: 589  FESAGIRNVLRKVKPDRFGLVVAVNALYRPGPMENIDRFVKRKEHREHYSFPNDVLSEIL 648

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
             ET G+++YQEQVM++A  + G SL +AD+LRRAM KK  + +++ +  FI GA + G +
Sbjct: 649  GETFGILVYQEQVMEVASAMGGLSLGQADLLRRAMSKKKHDVIEQMRTNFIDGALQKGYN 708

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              +   ++  +  FA+YGFNKSHA AY+ +++Q A++KT++P  F  A +   +    K 
Sbjct: 709  AKLTQQVYSYIENFANYGFNKSHAVAYSKLAFQLAYLKTYFPGPFYTALLNSVIGGEAKT 768

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKP 861
            K++ Q+  +  I++  P +N   + +     +I     +IKG+     R+++E    +  
Sbjct: 769  KEYIQELNRLGIKVKAPDINLSQLQYAFYQQQIIMGFLSIKGLRRDFIRNLIEERQSNGE 828

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F S++    R+  K +   ++E L+F+G LD FGY+R +L   L  + K   +  +N   
Sbjct: 829  FKSVDSLLRRMRDKGITEEIIEKLIFSGTLDSFGYNRAELGDFLPELLKGIAFSGQN--- 885

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
               ++F           T++     +   + + E+ +LG Y S HP++ Y  ++ + G K
Sbjct: 886  --VDLFEKL------MPTIKHRPDMDLDEKLDWEEELLGTYISAHPVERYANLIEQNGFK 937

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +E         +     + S +  +T+KG  + +   ++P  E EA  FP
Sbjct: 938  KIDEFS---DEAQVTTIVYIRSIRTIRTKKGESMAFANITDPTGESEAVIFP 986


>gi|294625888|ref|ZP_06704502.1| DNA polymerase III alpha chain [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 11122]
 gi|292599798|gb|EFF43921.1| DNA polymerase III alpha chain [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 11122]
          Length = 1065

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/1055 (25%), Positives = 472/1055 (44%), Gaps = 89/1055 (8%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q  +  P++  L   S +S L GA S   +  +       A+AITD  +L   +   + 
Sbjct: 21   AQQADDLPAYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEA 80

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            + A G++ I+G +  +                     +VLLV  A GY +L  L++    
Sbjct: 81   SRATGVRLIVGSEFTLVDGIR----------------LVLLVENAHGYPQLCGLITTARR 124

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                K + R+  + +Q    +   ++ G     +   +   +   AE+     +++FG+R
Sbjct: 125  A-ASKGAYRLGRAEVQAQFRD---VVPG-----VFALWLPGAQPQAEQGA-WLQQVFGER 174

Query: 182  LYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ ++ HR  D   R   +  LA    +  +A+ +       +    D L A+ H+  +
Sbjct: 175  AFLAVELHREQDDVARLQVLQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRHTLPL 234

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            ++         + +L+ R  + +I+ D    L+ TVE+++RC+F +   +   PR +  E
Sbjct: 235  AECGAHLFRNGERHLRTRRALGNIYPDA--LLQATVELSQRCTFDISKISYTYPRELVPE 292

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                     + LR    AG+  R   G  AK       R+ ++ EL +IA   +  +FL 
Sbjct: 293  G----HTPTSYLRQLTEAGIRKRWPGGISAK------VREDIEKELALIAFKNYEAFFLT 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++A+  NI +  GRGS A S   YAL IT ++P    LL  RFL+  R   PD D
Sbjct: 343  VQDVVRFARDQNI-LCQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDID 401

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EV++YV +KYG ER A   T    + K+A+RDV +A  +P  Q+  L    
Sbjct: 402  VDFEHERREEVLQYVYSKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCY 461

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                      Q I +        LA+P ++++L +++ L    RH S H  G VI D PL
Sbjct: 462  GWGNGETPMEQRIEE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPL 517

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDL 598
            S LVP+      +  + Q++   +E   L+K D L L  LT ++K+L+ +   RG    +
Sbjct: 518  SLLVPVENAAMPNRTIIQWDKDDLETMQLLKVDCLALGMLTCIRKTLELVRGHRGRNYSI 577

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
            + +P DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D
Sbjct: 578  ATLPGDDAPTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGD 637

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+ G+E++    P ++ +LK T GV ++QEQVM++    + YS  EAD LRR+
Sbjct: 638  MVHPYLRRRQGREEVNYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYSEDEADNLRRS 697

Query: 717  MGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M    +  +M++ + R        G + +    IFE +  F  YGF +SHAA++A + Y 
Sbjct: 698  MAAWRRGGDMEQHRTRVRERMQGKGYASSFIDQIFEQIKGFGSYGFPQSHAASFAKLVYA 757

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-----QFNIQIMPPSVNTPCVDFKV 830
            + W+K H P  F    +  +        +  QDAR     +  ++++P  V     D  +
Sbjct: 758  SCWLKRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWDNTL 817

Query: 831  GDNRIY-------------YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
               R +               +  + G+    A+ I+ A   + F  + D C R     L
Sbjct: 818  VGGRPWRSAADPGEQPAIRLGMRQVAGLSQVVAQRIVAARTQRAFADIGDLCLRA---AL 874

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            + +   +L  AGAL     +R     ++  +                 +     G+  ++
Sbjct: 875  DEKARLALAEAGALQGMVGNRNAARWAMAGV------------EARRPLL---PGSPEER 919

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
                +F    +      + R +G     HP+ + +P +R+  I G  E      G+ + +
Sbjct: 920  PV--EFEAPRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLSELQGRRHGSGVHV 977

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A +V  +Q+  T KG+   +VT  +         +
Sbjct: 978  AGLVTQRQRPATAKGT--IFVTLEDEQGMINVIVW 1010


>gi|170742616|ref|YP_001771271.1| DNA polymerase III subunit alpha [Methylobacterium sp. 4-46]
 gi|168196890|gb|ACA18837.1| DNA polymerase III, alpha subunit [Methylobacterium sp. 4-46]
          Length = 1075

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/1045 (26%), Positives = 449/1045 (42%), Gaps = 83/1045 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQV + YS L GA S   +    A     A+ +TD +++   ++  + A A G + + 
Sbjct: 3    VELQVTTHYSFLRGASSPEELFATAALLGLTALGVTDRHSVAGLVKAHEAARATGCRLVA 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+LD+   D                ++++  +    Y RL  L++       GK    +
Sbjct: 63   GCRLDLSGPD-------------AGTALLVYPTDRAAYGRLCRLLTLGKGR-AGKGGCTL 108

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE-KRLLTFKKLFGDRLYVNLQRHR 190
             LS L     EGLI +              +    A  +RL   +++FG R +  L R  
Sbjct: 109  DLSDLAAW-REGLIAVL-----------LADRPDEALPRRLGRLREVFGRRAHCALTRRF 156

Query: 191  G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            G  D+ R  +V  LA    +P VAT + L    E     DV+  +   T +      R  
Sbjct: 157  GVNDQLRLDRVADLARAARIPTVATGDVLCHVPERRLLQDVVTCIRLGTTIDAAGFARER 216

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                +L+  +E   +F+  PEA+E    IA  C F L       P     E  +  +   
Sbjct: 217  HAGRHLQAPAETARLFARHPEAVERARAIAEACRFSLDDLTYTYP----DEVGEDGRSAL 272

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L    + G   R   G        ++  +++  E  +IAR  ++ YFL V   +++A+
Sbjct: 273  ERLETMTLEGAARRYPDGV------PEEVHRQIRHEFELIARKGYAPYFLTVEAIVRFAQ 326

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I +  GRGS A SV  Y L IT IDP+R  LLFERF++ +R   PD D+DF  +RR+
Sbjct: 327  RQGI-LCQGRGSAANSVVCYCLGITAIDPVRQKLLFERFVSDNRDEPPDIDVDFEHERRE 385

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI++V   YG  R A   T     A+ A+R+VG+ L +P      L +L+       V 
Sbjct: 386  EVIQWVYATYGRHRAALTATVIRYGARGAVREVGKVLGVPEDVTGALARLVWGWSREGVG 445

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                  ++R     LAD  +   L++++ L G  RH   H  G V+    L +L P+   
Sbjct: 446  ----EREARALNLNLADRRLRLTLDLARALIGTPRHLGQHPGGFVLTLDRLDELCPITPA 501

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG----VKVDLSLIPFD 604
               +    +++   IE    +K D LGL  L  L+++ + L +         +++ IP +
Sbjct: 502  TMENRQTIEWDKDDIEALRFMKVDVLGLGMLGCLRRAFELLGEHRGETDPPREIAAIPPE 561

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D  TY ++    TLG+FQ+ES      L  MQP  + D+   V++ RPGPI  D +  Y 
Sbjct: 562  DEATYAMIRRADTLGVFQIESRAQMAMLPRMQPRNLYDLTIEVAVVRPGPIQGDMVHPYL 621

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+ G E+       +  +L+ T GV ++QEQ MQ+A + +G++ +EAD LRRAM   K 
Sbjct: 622  RRRRGIERPEYPSEALRSVLERTLGVPLFQEQAMQVAIVAAGFTPAEADGLRRAMATFKA 681

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              ++   +E+ I+G  +NG +   A   F  L  F  YGF +SHAA++A+I+Y ++W+K 
Sbjct: 682  NGKIGLYREKLIAGMIRNGYAADFAERTFRQLEGFGSYGFPESHAASFALIAYASSWLKC 741

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIY 836
            H+P  F  A +  +        +  +DAR+  + + P  VN    D  +         + 
Sbjct: 742  HHPDVFCCALLNAQPMGFYAPAQIVRDARRHGVPVRPIDVNASRWDCTLEKAEGPRLAVR 801

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  ++G+       I        F S ED   R     +  R LESL  A A    G 
Sbjct: 802  LGLRLVRGLANAEGARIATVREADLFRSPEDLWRRT---AVPLRALESLAAADAFGSLGL 858

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--------KGTFSDKITLEKFSVENS 948
             R + L ++           +        +FA                 + L        
Sbjct: 859  GRREALWAI-----------RGLAPVPLPLFAAADAREAAIRPELDEPAVALAPMPEGAG 907

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             V    + R        HP+   +P L + G+           G  + +A +V+ +Q+  
Sbjct: 908  VV---ADYRAASLSLGRHPVAFLRPDLARDGMSACAALRRLRDGARVTVAGLVLVRQKPG 964

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            + KG  + ++T  +         +P
Sbjct: 965  SAKG--VMFITLEDETDVANLVVWP 987


>gi|295114593|emb|CBL33230.1| DNA polymerase III catalytic subunit, DnaE type [Enterococcus sp.
           7L76]
          Length = 930

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/941 (32%), Positives = 482/941 (51%), Gaps = 49/941 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2   SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIG +L+    +    +            ++L     +GYQ+L++L S     +      
Sbjct: 62  IIGLRLEYTPAEKEGHSE-----------LLLFAKNLKGYQQLMQLSSSKMTTEGPFYLA 110

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
               S L +     L  +T  + G + +  FF   Q A          F  + L+V    
Sbjct: 111 E-HQSLLSD-----LFAVTLSAKGEVAQ-TFFEDEQQAVHAFQQLASYFDPQSLFVEHSF 163

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKD 244
               ++ R   +       +LP VA      L+ E+  A  VL ++  +          +
Sbjct: 164 --SMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQTPE 221

Query: 245 RPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              +      +    +M+ I     E ++NT+++A  C   + +H  +LP F   +    
Sbjct: 222 IEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDN--- 276

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +   + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D 
Sbjct: 277 -QTAGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDV 328

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D  
Sbjct: 329 MDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIP 388

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN  
Sbjct: 389 DNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKL 448

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              +  +A  +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L   V
Sbjct: 449 KITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNSV 507

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
           P+      ++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP
Sbjct: 508 PLQPGSN-EILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAIKRVYNQTIHLNQIP 566

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+ 
Sbjct: 567 LDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFI 626

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K
Sbjct: 627 RRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKK 686

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
           + +D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K H
Sbjct: 687 DVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVH 746

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
           YP  F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  ++
Sbjct: 747 YPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSS 806

Query: 842 IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
           +KG+     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R Q
Sbjct: 807 LKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQ 866

Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
           L   L++  +         +    ++    K    +     
Sbjct: 867 LAVGLESNIQSILL-----SGGSMDLLETLKPKEEEIADYP 902


>gi|225874743|ref|YP_002756202.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC
            51196]
 gi|225794171|gb|ACO34261.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC
            51196]
          Length = 1071

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1042 (27%), Positives = 491/1042 (47%), Gaps = 44/1042 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  +V L   S++S L+ A     + D+ A    PA+A+ D N L+ A  F   A    I
Sbjct: 2    TDRYVELHAASAFSFLQAASQPEKLTDRAAEIAMPALALLDHNGLYGAARFHTAAQRNNI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQG--KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            +  IG ++ +       +               I LL  + EGYQ L +L++R  + ++ 
Sbjct: 62   RAHIGAEIAVSSFGPRWLPPAWLPHQCKSEPTRIPLLCESREGYQNLCQLITRFKMREET 121

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYV 184
            K+S       L E  + GL+ LTGG  GP+  A          + +    ++F    +YV
Sbjct: 122  KESGAATFDDLSEYAS-GLVCLTGGDEGPLAAALSSGGEAAGREAVEELTRIFGRGSVYV 180

Query: 185  NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH+   + +R    +++A +  LP++ATN     +  + E  D+  A+ +   + Q 
Sbjct: 181  ELQRHQDREEEWRNQAALRIARSLNLPVIATNGVRHATPYEREVLDLFTAIRNHIELDQA 240

Query: 244  DRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R   T    +L+  SEM ++F D+P A+ENT+ ++ R  F L       PR+   + D 
Sbjct: 241  GRLLATNSQRHLRTASEMTALFRDIPGAVENTLVLSSRLGFQLHDLGYEFPRYPVPDGDT 300

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +    ++ LR +   G+  R A          +  +++++ EL +IA++ F+GYFLIV D
Sbjct: 301  M----DSFLRKRVEEGVLRRYA--PKNDRGLMERAKKQVEHELTLIAKLGFAGYFLIVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             I++ ++++I V  GRGS A SV  Y L IT +DP+   LLFERFL+  R   PD D+D 
Sbjct: 355  IIRFCQQHDILV-QGRGSAANSVVCYCLEITAVDPVGMDLLFERFLSESRNEWPDIDLDL 413

Query: 423  CQD-RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
              + +R++ I+YV  +YG    A      + + K+A R+ G+AL      + RL  L   
Sbjct: 414  PSEEKREQAIQYVYRRYGELGTAMCANVITYREKSAARETGKALGFDEETLGRLSSLAGQ 473

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                  +   +A         +    + + +E+S +++ L RH   H+ G+VI    L++
Sbjct: 474  WEWRGNT-DTMAHTFHHAGFDIRHARIAKYIELSMRIQDLPRHLGQHSGGMVICQGHLNK 532

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600
            +VP+ R   ++  V Q++ +     G+IK D LGL  + +L   L+ +    G KVDL+ 
Sbjct: 533  VVPLERASMANRHVVQWDKEDCADLGIIKVDLLGLGMMAVLHDCLELIPRHYGNKVDLAQ 592

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P DD E Y ++    T+G+FQ+ES     +L    P    D++  V++ RPGPI    +
Sbjct: 593  LPQDD-EVYRVVQRADTVGMFQIESRAQMASLPRNCPRKFYDLVVQVAIIRPGPIVGQMM 651

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM- 717
              Y  R+ GKE +   HP + P+L+ T GV ++QEQ+++IA  ++ +S +EAD LRRA+ 
Sbjct: 652  HPYMRRRQGKEAVTYPHPSLVPVLERTLGVPLFQEQLLRIAMTVADFSGAEADELRRAVG 711

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             ++  E M   +    +G ++NGI +     I + ++ FA YGF +SHAA++A+I+Y +A
Sbjct: 712  MRRSWERMKNLEGNLRAGMTRNGIDERTQDTIVQQISSFALYGFPESHAASFALIAYASA 771

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN---- 833
            ++K  Y   F AA +  +           +DA++  +++ P  V        V       
Sbjct: 772  YLKVKYLAAFTAAILNNQPMGFYSPAVLVKDAQRHGLRVKPIDVQVSEWRCTVEHESDGG 831

Query: 834  -RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              +   L   + +   +A  ++ +   D PF S+ED   RV    LNR+ L+ L   GAL
Sbjct: 832  LALRIGLGYARQLKRESAEALVRSRLQDGPFRSVEDVAQRVPF--LNRKELKRLAEIGAL 889

Query: 892  DCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            +       R   L  ++   K               + A+ +    D          N  
Sbjct: 890  NQLQGIEHRRDALWQIERAGKL-----------EGPLLANAESLREDS-EARPLQQMNVE 937

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             R   +    G     HP+   +  LR+  I   ++      G  +R+A  ++++Q+  T
Sbjct: 938  ERLVADYAGTGLTVGRHPMHYRRAELRRANILSAQDLRQRRDGEYVRVAGCIIARQRPGT 997

Query: 1010 RKGSRIGWVTFSEPAKEYEANF 1031
             KG    +++  +         
Sbjct: 998  AKG--FIFISMEDETGICNVIV 1017


>gi|84514485|ref|ZP_01001849.1| DNA polymerase III subunit alpha [Loktanella vestfoldensis SKA53]
 gi|84511536|gb|EAQ07989.1| DNA polymerase III subunit alpha [Loktanella vestfoldensis SKA53]
          Length = 1101

 Score =  784 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/1050 (25%), Positives = 453/1050 (43%), Gaps = 86/1050 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L V + +S L GA    ++     +     I   D N +   +     A  AGI P
Sbjct: 25   DFVELGVATCFSFLRGASDAVDLAVTAHSLGYDKIGCADLNTMAGVVRLHAAALKAGITP 84

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG---- 125
            +IGC+L +   +                  +        Y RL  L+S+  + D G    
Sbjct: 85   VIGCRLQLVSGEAF----------------LAYPRDRASYGRLCALLSKGKMRDAGGGWQ 128

Query: 126  -KQSVRICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             K +  I L  L        LI + G      D   F        + L + + +    LY
Sbjct: 129  AKGACDISLDDLAAHAADVQLIAVPG-----TDLRHFAALLPRLVRALPSLRHVAASCLY 183

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                  RG DR R + +  LA  + L ++ATN+  + + +     DV+  + H T +++ 
Sbjct: 184  ------RGDDRARINALDALARRYGLSILATNDVHYHAPDRRPLQDVMTCIRHKTTIAKA 237

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                    + +LK+ ++M  +F+D P A+  T ++A   +F L+  A   P     E   
Sbjct: 238  GFLLDANAERHLKSPAQMARLFADWPHAIRATRDVADASTFDLRDLAYEYPHETVPEG-- 295

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +  +  L      G   R   G  A        +  L  EL +IA++    YFL + +
Sbjct: 296  --RSPQEYLEELTWKGAAARYPDGVPA------ALQATLRKELALIAKLDIPQYFLTIHE 347

Query: 363  FIQWAKKNNIP--VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             I +A+    P  +  GRGS A S   Y L IT +DP +  LLFERF++ +R   PD D+
Sbjct: 348  IIDFARNQCKPPILCQGRGSAANSAVCYVLGITAVDPAKNDLLFERFISEERKEPPDIDV 407

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI+++ NKYG  R A   T    + + A+R+VGR + +       L K I 
Sbjct: 408  DFEHERREEVIQHIYNKYGRNRAALCATVIHYRPRMAVREVGRVMGLSEDVTTALAKTIW 467

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  +     A+        L DP + R + ++ ++ G+ RH   H  G ++ ++ L+
Sbjct: 468  GSWGREIGAAQAAE----AGIDLRDPLMARTIRLADQMIGMPRHLGQHVGGFILTEKALT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
            + VP+      D    +++   I++  ++K D L L  LT ++K+ D +A     + DL+
Sbjct: 524  ETVPIGNGAMPDRSFIEWDKDDIDELRILKVDVLALGMLTCIRKAFDLIAAHHGKRFDLA 583

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DN 657
             +P +D   Y +L    +LG FQ+ES      L  ++P    D++  V++ RPGPI  D 
Sbjct: 584  TVPQEDPAVYDMLCKGDSLGTFQVESRAQMNMLPRLKPRAFYDLVIQVAIVRPGPIQGDM 643

Query: 658  IVVYNNRKNGKEKIVSIHP-------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            +  Y  R++G E +    P        +  +L  T GV I+QEQ M+IA + + +S  EA
Sbjct: 644  VHPYLRRRSGAEVVEYPSPGPQYDPDELKKVLGRTLGVPIFQEQAMKIAMVAAEFSTKEA 703

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LR+AM   +    +   +E+ +    + G     A   F  +  F DYGF +SHAA++
Sbjct: 704  NELRKAMATFRSHGTIGALEEKMVGRMIRRGYDPAFAARCFNQIKGFGDYGFPESHAASF 763

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++ Y ++W+K HYP  F AA +  +        +  +DAR+  + +    VN    D  
Sbjct: 764  ALLVYISSWIKCHYPDVFCAALLNSQPMGFYAPAQIVRDAREHGVIVRAADVNYSDWDNS 823

Query: 830  V-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +     G   +   L  I G+    A+ IM+A   +PFD L+D  +R        + L +
Sbjct: 824  LEPLAPGVFAVRLGLRQIDGMRRDMAQRIMDAR-GRPFDDLKDMKTRAKLDAGTVQRLAA 882

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKF 943
               A AL      R Q L     ++                +FA  +   ++ +  L + 
Sbjct: 883  ---ADALRSMMLDRRQALWDARALRDA----------PDLPLFADTRDEGAEVRFDLPQM 929

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
             V    V    + + L      HPL   +  + + G +   E      G  ++LA +V+ 
Sbjct: 930  PVCEQVV---ADYQTLRLSLKAHPLAFLRRSMTRQGYRAAAELAQMRSGQPVKLAGVVLI 986

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +Q+  + KG  + ++T  +         +P
Sbjct: 987  RQRPGSAKG--VCFITLEDETGVANLVVWP 1014


>gi|126668604|ref|ZP_01739557.1| DNA polymerase III, alpha subunit, putative [Marinobacter sp. ELB17]
 gi|126626934|gb|EAZ97578.1| DNA polymerase III, alpha subunit, putative [Marinobacter sp. ELB17]
          Length = 1068

 Score =  784 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/1055 (24%), Positives = 444/1055 (42%), Gaps = 78/1055 (7%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            + E   S+  L   S++S L GA   + + ++ A     A+AITD  ++           
Sbjct: 11   HYENPESYAELHCFSNFSFLTGASHPHELAEQAAGLGYSALAITDACSVAGIPRAWAALK 70

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             + ++ I G   ++              P    P  +LL  T +GY +L +L++      
Sbjct: 71   NSPVKLITGSWFELS----------DAPPRACTPCFILLARTRKGYGQLCQLITSARRRA 120

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            + K   ++    L+      +  L       +        SQ A        +LF  RL+
Sbjct: 121  E-KGQYQLYYRDLE------VHPLDDCLCLWLPPTLANADSQQALAAGEWLLRLFDRRLW 173

Query: 184  VNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            +   R     +  + +++  LA     P+ A+ +      +     DVL A+ + T +  
Sbjct: 174  LAASRTLESGEEQQLARIRWLATELRCPITASGDVHMHCRKRQPLQDVLTALRNHTNLEN 233

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                     + YL+  + +  +F      L+ T  IA++C+F         P  +     
Sbjct: 234  AGHCLFQNGERYLRPVAVLQRLFPTA--WLQQTQVIAQQCTFEPGSLRYEYPPDLVPSG- 290

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                     L      G   R  +G           +  +  EL +I+ M++  YFL + 
Sbjct: 291  ---TCAAGYLLKLTREGERRRYPEGT------PLQVQALIHKELGLISEMQYEHYFLTIE 341

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A+   I +  GRGS A S   Y L IT+++P +  LLFERF++ DR   PD D+D
Sbjct: 342  DIVAFARGRGI-LCQGRGSAANSAVCYCLGITEVNPAKVDLLFERFISKDRNEPPDIDVD 400

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F   RR+EVI+Y+  +Y  +R A   T    + ++ +RDVG+ L      V++L   I  
Sbjct: 401  FEHQRREEVIQYIYQRYSRDRAAIAATVIRYRPRSTIRDVGKVLGFDPLLVEQLLDGIDW 460

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                    Q I D +  R   +AD    +   +   L G  RH S H  G VI   PL++
Sbjct: 461  RDKATPWRQQILDKNLTRNPNVAD----QFFTLVNTLLGFPRHLSQHVGGFVISAGPLAE 516

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600
            LVP+     +D  V Q++   +E  GL+K D L L  LT ++K+L+ + AQ G    +  
Sbjct: 517  LVPIENAAMADRTVIQWDKNDLESLGLMKVDVLALGILTAIRKALEMISAQLGRPFHMQD 576

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            IP +D +TY +L T  ++G+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 577  IPQEDPDTYAMLQTGDSVGVFQVESRAQINMLPRLKPATYYDLVVQVAIVRPGPIQGDMV 636

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R++G E +   +  I  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM 
Sbjct: 637  HPYLKRRHGLEPVNYPNQAIQRVLERTLGVPIFQEQVIRLAMVAAGFSGGEADQLRRAMA 696

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K   ++   +++ +SG  + G +   A  +++ +  F  YGF +SHAA++A++ Y +A
Sbjct: 697  AWKSHGDLTPFRDKLLSGMKERGHTDDFAERLYQQICGFGGYGFPESHAASFALLVYVSA 756

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K HYP  F  A +  +        +  QDAR+  + + P  VN    D  +       
Sbjct: 757  WIKRHYPAAFYCALLNSQPMGFYSASQLVQDARRHGVDVQPLDVNHSQWDHTLQSQTPQS 816

Query: 836  ------------------YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
                                 L+ I+G+       +     +  + S            L
Sbjct: 817  QAPQSQTLQTQTDNPLSLRLGLSQIRGLSQQAGTSVSAKRPENGYTS---SSQLRQLTGL 873

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            N+R +E L  A A+  F  +R Q    L   ++ A+            +F  E    + +
Sbjct: 874  NQRDMELLAGANAMPGFTSNRHQAYWQLLGHEQPAE------------LFIGEDNN-APE 920

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
               E+    N       +    G     HPL + +            E      G  +++
Sbjct: 921  PACEQLPTPNEGQNIAADYSSQGLTLQRHPLALLREQGHLSFCLSASELNTIEPGRPVQV 980

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A +V  +Q+  T  G  + +VT  +         +
Sbjct: 981  AGLVTGRQRPGTASG--VTFVTLEDETGNINVVVW 1013


>gi|330818376|ref|YP_004362081.1| DNA polymerase III, alpha subunit superfamily protein [Burkholderia
            gladioli BSR3]
 gi|327370769|gb|AEA62125.1| DNA polymerase III, alpha subunit superfamily protein [Burkholderia
            gladioli BSR3]
          Length = 1080

 Score =  784 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/1055 (24%), Positives = 448/1055 (42%), Gaps = 70/1055 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S++S L GA +   ++++  A     IAITD  +L  A      A A    
Sbjct: 8    PAYAELFCRSNFSFLHGASAAEELVERAQALGYRGIAITDECSLAGAPRMHVAAKANAEA 67

Query: 69   PIIGCQLDID----------------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
             +   +                     +    +   G  P P    +VLL    EGY  L
Sbjct: 68   LLKQWEEAGSDPTSKPEPLRLVIGSYFEVTADVVAPGGDPGPGAFGLVLLARNREGYGNL 127

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             EL+S   +  + K +  +    L    +E   +        I    +   + V + ++ 
Sbjct: 128  SELISWRRMASK-KGTYTLTPRMLAAPPSEFAHLRGVPDCFAILVPSYPVRADVLDAQVA 186

Query: 173  TFKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             FK +FG++  + L Q  R  D      +   +    +PLVA  +    +       D++
Sbjct: 187  WFKHVFGEQARLGLVQLGRALDGVYRETIEAASVQRAMPLVALGDVTMHARSCKPLQDIM 246

Query: 232  MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
             A+     V +      +  + +L+    +  +F    EAL  +  +   C F +     
Sbjct: 247  TAIRVGQPVGECGYALASNAEQHLRRLGRIGRLFP--AEALAESCRVLGECRFDMSKLKY 304

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
              P  I  +           L  +   G + R A+         +  R+++ +EL +IA 
Sbjct: 305  EYPLEIVPDGM----TPTQYLAQETWKGAQERFAKRI------PKSVRRQIKYELGLIAE 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M++  +FL V D +++A+   I +  GRGS A SV  Y L +T  DP R ++LFERF++ 
Sbjct: 355  MEYEPFFLTVYDIVKFARSKEI-LCQGRGSAANSVVCYCLRVTAADPGRTTMLFERFISR 413

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R   PD D+DF  +RR+EVI+Y+  KY  +R A      + + + ALR+ G+AL +   
Sbjct: 414  ERGEPPDIDVDFEHERREEVIQYIYEKYTEDRAALAAAVSTYRPRGALRETGKALGVDLM 473

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
             V+R+ K           L   A      E     P +    E++ +L G  RH S H+ 
Sbjct: 474  LVERVAKEHRWFDGRADLLARFASVGLDPEV----PIIQAWAEMASRLLGFPRHLSQHSG 529

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G VI    L++LVP+         V Q++   +E  GL+K D L L  LT L+++ DF+ 
Sbjct: 530  GFVISRDKLTRLVPIENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLTALRRAFDFVG 589

Query: 591  Q-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            + RG ++ +  I   D  TY +++   T+G+FQ+ES      L  ++P    D++  V++
Sbjct: 590  EWRGKRIGIDDIREGDKATYDMISNADTVGVFQIESRAQMSMLPRLRPRKYYDLVIEVAI 649

Query: 650  YRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             RPGPI       Y  R+  KE +  +   + P L+ T GV I+QEQVMQIA + +G++ 
Sbjct: 650  VRPGPIQGGAVHPYLKRRQNKEDVSYLKDDLKPALERTLGVPIFQEQVMQIAIIAAGFTP 709

Query: 708  SEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             EAD LRRAM   K K  ++K +E+ + G ++       A  IFE +  F +YGF +SHA
Sbjct: 710  GEADELRRAMAAWKRKGNLEKYREKIVKGMAERHYPSEFASQIFEQIKGFGEYGFPESHA 769

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A++A++ Y ++W+K H P  FLA+ +  +        +  QDA++  + + P  V     
Sbjct: 770  ASFAILVYASSWLKCHEPAIFLASLLNSQPMGFYPPAQLVQDAKRHGVTVRPIDVTASNW 829

Query: 827  D----------FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            D             G   +   ++ + G+G   A  I  A    PF S++D   R   ++
Sbjct: 830  DASLEPLPDEPPPEGRPAVRLGMSLVAGLGREAALRIEAARQQGPFASVDDLARRARLER 889

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             +   L +            +R   L             +        ++ A       D
Sbjct: 890  RDLEALAAANAF---ATLAGNRRDALW------------QAVAAAPSRDLLAMAP---ID 931

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            +    +    + +     + R +G   + HP+ + +  LR   +   +E          R
Sbjct: 932  EPVRPELGAPSEADDIVADYRTIGLTLNRHPVALLREQLRARRLASAQELAQHRNRRLAR 991

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
               +V ++Q   T KG+   +VT  +         
Sbjct: 992  ACGIVTARQMPSTAKGTL--FVTLEDETGSVNIIV 1024


>gi|323440753|gb|EGA98462.1| DNA polymerase III alpha subunit [Staphylococcus aureus O11]
          Length = 1065

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/1025 (31%), Positives = 518/1025 (50%), Gaps = 83/1025 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L     G + L +L S++ +         +
Sbjct: 63   GMTIYVTNGLNTIET-------------VVLAKDNNGLKDLYQLSSKIKMNSIEN----V 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                LQ+  +  +I+             F N +      +  F                 
Sbjct: 106  SFELLQQFSSNLIII-------------FKNVADEHRGIVQVFDSH-------------- 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y + + V +     +  V      + + +D +    L A+  +T +      +    
Sbjct: 139  EDTYLDHRSVLV---QGIKHVWIQTVCYQTPQDADTISALAAIRDNTKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +     E+  +  D+  E L     IA++C+  L+ H  +LP++     +         
Sbjct: 195  AHFLTEKEIKQL--DINQEYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDES-------- 244

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                A   L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N
Sbjct: 245  ----AKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTN 300

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ V
Sbjct: 301  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERV 360

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  +IP+     ++L 
Sbjct: 361  IQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSVIPHKLG--ITLD 418

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +   
Sbjct: 419  EAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDT 478

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + +
Sbjct: 479  G--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVF 536

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   
Sbjct: 537  DLLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPS 596

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ ++
Sbjct: 597  KVQYLHPYLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESER 656

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A
Sbjct: 657  QHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYA 716

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  +
Sbjct: 717  NILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSKEGIYLSIGTIKGVGYQS 776

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +
Sbjct: 777  VKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQV 836

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  +E++       +F       + K   E       ++  + E+  LGFY S HP+
Sbjct: 837  LDGDLNIEQD-----GFLF----DILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPV 887

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            D    +          +         I +       +Q +T+ G  + +VT ++  +  +
Sbjct: 888  D---KMFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLD 942

Query: 1029 ANFFP 1033
               FP
Sbjct: 943  GVIFP 947


>gi|312872348|ref|ZP_07732418.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|312875479|ref|ZP_07735482.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 2053A-b]
 gi|325911984|ref|ZP_08174386.1| DNA polymerase III, alpha subunit [Lactobacillus iners UPII 143-D]
 gi|311088990|gb|EFQ47431.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 2053A-b]
 gi|311092171|gb|EFQ50545.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|325476169|gb|EGC79333.1| DNA polymerase III, alpha subunit [Lactobacillus iners UPII 143-D]
          Length = 1040

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/1028 (31%), Positives = 524/1028 (50%), Gaps = 46/1028 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6    LQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            Q          +   G         ++++     GYQ ++ L S + L  + GK+ + + 
Sbjct: 66   Q----------LRINGLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
            L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116  LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
                Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +       +  
Sbjct: 175  SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLKSIDDNQSIRDGYELTLKH 233

Query: 250  -PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +HYLK + ++   ++ L   EAL NT ++    +  ++   P LP+FI+ + D     
Sbjct: 234  VGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD----T 289

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L + A+ GL+ +       K      Y  RL +EL +I  M F+ YFLIV D I +
Sbjct: 290  SYEFLHHLAMTGLQAKF-----NKHDIPAKYLNRLKYELKIIDEMGFNDYFLIVWDVINY 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
                 I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   +R
Sbjct: 345  CHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPDNR 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       ++   K IP   +  
Sbjct: 405  RNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKSKI 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V + 
Sbjct: 465  TLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQ 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                  +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP DD 
Sbjct: 525  NGSL-GIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLDDP 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  RKN
Sbjct: 584  ATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +EK+V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   EM 
Sbjct: 644  KEEKVVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSMEMK 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K    F++ A + G S   A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP +
Sbjct: 704  KIGVDFVNRAVQQGHSAAAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQ 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY-SLAAIKGV 845
            F  A +   + + +K+ K+  D +  NI+I  P +N    +F + D       L +I G+
Sbjct: 764  FYVALLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSIIGL 823

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                   IM     +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL S 
Sbjct: 824  RMDFVEQIMN--LQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLASY 881

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +++      +    +  +  +F   +    D        + +++ + E E  VLGF    
Sbjct: 882  EDLL-----ICIKMSGGNNVLFQALEPKELD------IKMPSNAQKEEWETSVLGFSPQI 930

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             P+   +   +K G K + +      G ++     ++  +   T+   ++ +  F++  +
Sbjct: 931  DPILAAQIYAKKYGFKPFSDFTFYDEGVSV---GKMMDIKVITTKNNKKMAFAKFNDLHE 987

Query: 1026 EYEANFFP 1033
              +   FP
Sbjct: 988  TVDFVIFP 995


>gi|329921313|ref|ZP_08277751.1| DNA polymerase III, alpha subunit [Lactobacillus iners SPIN 1401G]
 gi|328934605|gb|EGG31109.1| DNA polymerase III, alpha subunit [Lactobacillus iners SPIN 1401G]
          Length = 1040

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/1028 (31%), Positives = 524/1028 (50%), Gaps = 46/1028 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6    LQNISSFTLLKSPISIEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            Q          +   G         ++++     GYQ ++ L S + L  + GK+ + + 
Sbjct: 66   Q----------LRINGLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
            L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116  LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
                Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +       +  
Sbjct: 175  SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDVFLQEVLQSIDDNQSIRDGYELTLKH 233

Query: 250  -PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +HYLK + ++   ++ L   EAL NT ++    +  ++   P LP+FI+ + D     
Sbjct: 234  VGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD----T 289

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L + A+ GL+ +       K      Y  RL +EL +I  M F+ YFLIV D I +
Sbjct: 290  SYEFLHHLAMTGLQAKF-----NKHDIPAKYLNRLKYELKIIDEMGFNDYFLIVWDVINY 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
                 I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   +R
Sbjct: 345  CHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPDNR 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       ++   K IP   +  
Sbjct: 405  RNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKSKI 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V + 
Sbjct: 465  TLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQ 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                  +PVTQ   K++E  GL+K DFLGL  LT+L  + + +   G+K+D+  IP DD 
Sbjct: 525  NGSL-GIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNAFNEVKMSGIKLDMDKIPLDDP 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  RKN
Sbjct: 584  ATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +EK+V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   EM 
Sbjct: 644  KEEKVVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSMEMK 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K    F++ A + G S + A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP +
Sbjct: 704  KIGVDFVNRAVQQGHSASAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQ 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY-SLAAIKGV 845
            F  A +   + + +K+ K+  D +  NI+I  P +N    +F + D       L +I G+
Sbjct: 764  FYVALLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSIIGL 823

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                   IM     +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL S 
Sbjct: 824  RMDFVEQIMN--LQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLASY 881

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +++      +    +  +  +F   +    D        + +++ + E E  VLGF    
Sbjct: 882  EDLL-----ICIKMSGGNNVLFQALEPKELD------IKMPSNAQKEEWETSVLGFSPQI 930

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             P+   +   +K G K + +      G ++     ++  +   T+   ++ +  F++  +
Sbjct: 931  DPILAAQIYAKKYGFKPFSDFTFYDEGVSV---GKMMDIKVITTKNNKKMAFAKFNDLHE 987

Query: 1026 EYEANFFP 1033
              +   FP
Sbjct: 988  TVDFVIFP 995


>gi|49483944|ref|YP_041168.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            MRSA252]
 gi|282906098|ref|ZP_06313953.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            Btn1260]
 gi|282909013|ref|ZP_06316831.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            WW2703/97]
 gi|282911329|ref|ZP_06319131.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            WBG10049]
 gi|283958453|ref|ZP_06375904.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus A017934/97]
 gi|295428273|ref|ZP_06820902.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            EMRSA16]
 gi|60392207|sp|Q6GG04|DPO3A_STAAR RecName: Full=DNA polymerase III subunit alpha
 gi|49242073|emb|CAG40772.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            MRSA252]
 gi|282325024|gb|EFB55334.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            WBG10049]
 gi|282327277|gb|EFB57572.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            WW2703/97]
 gi|282331390|gb|EFB60904.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            Btn1260]
 gi|283790602|gb|EFC29419.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus A017934/97]
 gi|295127673|gb|EFG57310.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            EMRSA16]
 gi|312437840|gb|ADQ76911.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus TCH60]
 gi|315195607|gb|EFU25994.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            CGS00]
          Length = 1065

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1024 (31%), Positives = 519/1024 (50%), Gaps = 81/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L     G + L +L S + +         +
Sbjct: 63   GMTIYVTNGLNNIET-------------VVLAKDNYGLKDLYQLSSEIKM----NALEHV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L+      +I+             F N +      +  F                 
Sbjct: 106  SFELLKRFSNNMIII-------------FKNVADEHRDIVRVFDSH-------------- 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y + + V +     +  V   +  + +  D +    L A+  +T +      +    
Sbjct: 139  EDTYLDHRSVLV---QGIKHVWIQDVCYQTRHDADTISALAAIRDNTKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +    +E+  +    PE       IA++C+  L+ H  +LP++     +  +K      
Sbjct: 195  AHFLTENEIHQL-DVNPEYFTQADRIAQKCNAELKYHQSLLPQYQTPNDESAKKY----- 248

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                   L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N+
Sbjct: 249  -------LWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTND 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L  
Sbjct: 362  QYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDE 419

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +    
Sbjct: 420  AYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG 479

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + 
Sbjct: 480  --LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFE 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K
Sbjct: 538  LLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSK 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++
Sbjct: 598  VQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G  +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A 
Sbjct: 658  HFIEGTKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + 
Sbjct: 718  ILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSV 777

Query: 851  RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+E    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D + 
Sbjct: 778  KVIVEERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVL 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 +E++       +F       + K   E       ++  + E+  LGFY S HP+D
Sbjct: 838  DGDLNIEQD-----GFLF----DILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD 888

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              K  + K  +  ++          I +       +Q +T+ G  + +VT ++  +  + 
Sbjct: 889  --KKFVAKQYLTIFK-LSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDG 943

Query: 1030 NFFP 1033
              FP
Sbjct: 944  VIFP 947


>gi|282875876|ref|ZP_06284743.1| putative DNA polymerase III DnaE [Staphylococcus epidermidis SK135]
 gi|281294901|gb|EFA87428.1| putative DNA polymerase III DnaE [Staphylococcus epidermidis SK135]
          Length = 935

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/1012 (32%), Positives = 527/1012 (52%), Gaps = 81/1012 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI 
Sbjct: 3    AHLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +        T             V+L    +G + L +L S + + ++      +
Sbjct: 63   GMTIYLTDGLYTIET-------------VVLAKNNQGLKSLYQLSSAIMMRNKE----EV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             + WL+      +I+        +      ++ +                LY+N   +  
Sbjct: 106  PIEWLKRYDEHLIIIF---KEAELSHKQVIDAFE------------GKKELYLNHNSNNT 150

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                R               V   ++ +L+E+D E    L A+  +T +      + T D
Sbjct: 151  LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKL-DLIHEKETLD 194

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +  +  E+ ++ +   + + N  EI   C   +  H  +LP+F+    +      ++ L
Sbjct: 195  EHFPSIEELQTL-NLSEDMITNANEIEELCQAEIAYHQSLLPQFVTPNGE----TSKDYL 249

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                +  L             + + Y  RL  E  +I  M F  YFLIV+D I +AK + 
Sbjct: 250  WTILIHRLRE--------WELNDKTYFNRLKHEYKIITDMGFEDYFLIVSDLIHFAKTHE 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDIDIDFEDTRREKVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     ++L+ 
Sbjct: 362  KYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKLIPHKLG--ITLEE 419

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                  F+     +   +R  E+S+KLEGL RH STHAAGI+I D+PL +  P+      
Sbjct: 420  AYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQPLFKFAPL--TTGD 477

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  IP+DD + + 
Sbjct: 478  TGLLTQWTMAEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINIDIEAIPYDDKKVFD 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++   +
Sbjct: 538  LLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHNPNQ 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+M IA  ++G+S  EAD+LRRAM KK +  ++ +++
Sbjct: 598  VAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAMSKKNRAILESERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A 
Sbjct: 658  HFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K      +A+   I I+PP++N     +K  +  IY SL  IKG+G  + 
Sbjct: 718  ILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYLSLGTIKGIGYQSV 777

Query: 851  RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+ E   + P+    DF  R+  +  NR++LESL+  GA D FG +R  LLQ++D + 
Sbjct: 778  KLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGKTRATLLQAIDQVL 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 VE++       +F       + K + E+       +  + E+  LGFY S HP++
Sbjct: 838  DLNSDVEQDEM-----LF----DLLTPKQSYEEKEELPDQLLSDCEKEYLGFYISKHPVE 888

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
                   K    G  +         I +       +Q +T+ G  + +VT+ 
Sbjct: 889  ---KKFEKKQYLGIFQLSNGSHYQPILV--QFDHIKQIRTKNGQNMAFVTYE 935


>gi|309804153|ref|ZP_07698231.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
            11V1-d]
 gi|325912830|ref|ZP_08175208.1| DNA polymerase III, alpha subunit [Lactobacillus iners UPII 60-B]
 gi|308163736|gb|EFO66005.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
            11V1-d]
 gi|325477823|gb|EGC80957.1| DNA polymerase III, alpha subunit [Lactobacillus iners UPII 60-B]
          Length = 1040

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/1028 (31%), Positives = 524/1028 (50%), Gaps = 46/1028 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6    LQNISSFTLLKSPISIEQLIGSAKKRGYKAIALTDINFTYGLIDFYKMAKSEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            Q          +   G         ++++     GYQ ++ L S + L  + GK+ + + 
Sbjct: 66   Q----------LRINGLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
            L+ LQ+      I+ T      +    F+++  +    +    K+      LY+ +   +
Sbjct: 116  LNKLQKYLGNLHIITTANQHSELCDL-FYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
                Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +       +  
Sbjct: 175  SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLQSIDDNQSIKDGYELTLKH 233

Query: 250  -PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +HYLK + ++   ++ L   EAL NT ++    +  ++   P LP+FI+ + D     
Sbjct: 234  VGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD----T 289

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L + A+ GL+ +       K      Y  RL +EL +I  M F+ YFLIV D I +
Sbjct: 290  SYEFLHHLAMTGLQAKF-----NKHDIPAKYLNRLKYELKIIDEMGFNDYFLIVWDVINY 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
                 I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   +R
Sbjct: 345  CHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPDNR 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       ++   K IP   +  
Sbjct: 405  RNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKSKI 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V + 
Sbjct: 465  TLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQ 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                  +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP DD 
Sbjct: 525  NGSL-GIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLDDP 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  RKN
Sbjct: 584  ATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +EK+V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   EM 
Sbjct: 644  KEEKVVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSMEMK 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K    F++ A + G S + A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP +
Sbjct: 704  KIGVDFVNRAVQQGHSASAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQ 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY-SLAAIKGV 845
            F  A +   + + +K+ K+  D +  NI+I  P +N    +F + D       L +I G+
Sbjct: 764  FYVALLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSIIGL 823

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                   IM     +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL S 
Sbjct: 824  RMDFVEQIMN--LQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLASY 881

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +++      +    +  +  +F   +    D        + +++ + E E  VLGF    
Sbjct: 882  EDLL-----ICIKMSGGNNVLFQALEPKELD------IKMPSNAQKEEWETSVLGFSPQI 930

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             P+   +   +K G K + +      G ++     ++  +   T+   ++ +  F++  +
Sbjct: 931  DPILAAQIYAKKYGFKPFSDFTFYDEGVSV---GKMMDIKVITTKNNKKMAFAKFNDLHE 987

Query: 1026 EYEANFFP 1033
              +   FP
Sbjct: 988  TVDFVIFP 995


>gi|289428491|ref|ZP_06430176.1| error-prone DNA polymerase [Propionibacterium acnes J165]
 gi|289158323|gb|EFD06541.1| error-prone DNA polymerase [Propionibacterium acnes J165]
          Length = 1134

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/1076 (26%), Positives = 471/1076 (43%), Gaps = 105/1076 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HSSYS L+GA +  +++ +        +A+TD + L+  +  ++ A A G+  
Sbjct: 56   PYAELHCHSSYSFLDGASNPEDLVIRAVELGLSGLALTDHDGLYGVVRMAEAAEACGLST 115

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128
            IIG +L I + +      Q     P    +++L +  EGY+RL E ++  YL++ G K  
Sbjct: 116  IIGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTDAYLVEGGRKGR 170

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
                L  L E+      +LTG   G + +       Q AE  L     LF  D + V L 
Sbjct: 171  PVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGMLQ-AEAELRRLVDLFGIDNVLVELT 229

Query: 188  RHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
             HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV     + + D  
Sbjct: 230  DHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVRARRSLDEMDGW 289

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                P   L++ +EM  +FS   +A++NTV +A R +F L     + PR  +++  D   
Sbjct: 290  LPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHL---KSVRPRLPDQKVPD-GH 345

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR+    G         +AK         RL  EL++I    F+GYFLIV+D ++
Sbjct: 346  TPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDRGFAGYFLIVSDIVE 397

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   YAL IT +DP+ + L FERFL+  R   PD D+DF   
Sbjct: 398  FAQSQGI-LCQGRGSAAASAVCYALGITVVDPVFYGLPFERFLSVLREEEPDIDVDFDAR 456

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D   + +      
Sbjct: 457  RREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDAWSRQMERRSVP 516

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            P+      D              D +  ++Q++ GL RH   H+AG+V+   P+ ++ P+
Sbjct: 517  PLPHD--PDGPEIP---------DDVTTLAQQVMGLPRHLGIHSAGMVLTREPVGRICPI 565

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                     V Q++ +     GL+KFD LGL  L+ L  S D ++Q       L+ IP +
Sbjct: 566  EPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCGRFWTLASIPRN 625

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYN 662
            +   Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPGP+       Y 
Sbjct: 626  EPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPGPVQGGAVHPYI 685

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKI 721
             R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD+LRRAM  K+ 
Sbjct: 686  RRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADADLLRRAMGSKRG 745

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E +D  + +   G + NGI    A  I+  +  FA++GF +SHA ++A + Y +AW+K 
Sbjct: 746  VERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFAGLVYTSAWIKL 805

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------- 831
            HYP  FLAA +  +            DAR+  +    P V    V   +           
Sbjct: 806  HYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADLELLDACCEELG 865

Query: 832  ------------------------------------DNRIYYSLAAIKGVGTTTARHIME 855
                                                   +   L+ + G+   TA  I+E
Sbjct: 866  SEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSGINIETATRIVE 925

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
                + F SL+D   RVD        +E+L  AGA D    SR   L  +  I   A   
Sbjct: 926  ERERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQIGQINGVAPGQ 982

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
               +      +                           ++ R  G   + HP+   +  L
Sbjct: 983  LDVQVVTQPPLL----------------PEPTQMELLGDDLRATGISTADHPVRQVRDAL 1026

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             + G+   +          I +A +V  +Q+  T  G  + ++   +         
Sbjct: 1027 NRRGVVQVDRLDGVETRRRIEVAGVVTHRQRPGTAGG--VTFLNLEDETGLLNVIV 1080


>gi|302333367|gb|ADL23560.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus JKD6159]
          Length = 1065

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/1025 (31%), Positives = 523/1025 (51%), Gaps = 83/1025 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVEALAITDTNVLYGFPKFYDACIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L     G + L +L S++ +         +
Sbjct: 63   GMTIYVTNGLNTIET-------------VVLAKDNNGLKDLYQLSSKIKMNSMEN----V 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                LQ+  +  +I+             F N +      +  F                 
Sbjct: 106  SFELLQQFSSNLIII-------------FKNVADEHRDIVQVFDSH-------------- 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y + + V +     +  V   N  + + +D +    L A+  +T +      +    
Sbjct: 139  EDTYLDHRSVLV---QGIKHVWIQNVCYQTRQDADTISALAAIRDNTKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +     E+  +  D+ +  L     IA++C+  L+ H  +LP++     +         
Sbjct: 195  AHFLTEKEIKQL--DINQGYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDES-------- 244

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                A   L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N
Sbjct: 245  ----AKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTN 300

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ V
Sbjct: 301  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERV 360

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L 
Sbjct: 361  IQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKL--RITLD 418

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +   
Sbjct: 419  EAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDT 478

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + +
Sbjct: 479  G--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVF 536

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   
Sbjct: 537  DLLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPS 596

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ ++
Sbjct: 597  KVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESER 656

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A
Sbjct: 657  QHFIEGAKENGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYA 716

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  +
Sbjct: 717  NILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQS 776

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +
Sbjct: 777  VKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQV 836

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  +E++       +F       + K   E       ++  + E+  LGFY S HP+
Sbjct: 837  LDGDLNIEQD-----GFLF----DILTPKQIYEDKEELPDALISQYEKEYLGFYVSQHPV 887

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            D  K  + K  +  ++          I +       +Q +T+ G  + +VT ++  +  +
Sbjct: 888  D--KKFVAKQYLTIFK-LSNAQNNKPILV--QFDKVKQIRTKNGKNMAFVTLNDGIETLD 942

Query: 1029 ANFFP 1033
               FP
Sbjct: 943  GVIFP 947


>gi|325104062|ref|YP_004273716.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145]
 gi|324972910|gb|ADY51894.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145]
          Length = 1053

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/1041 (24%), Positives = 452/1041 (43%), Gaps = 77/1041 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQV S++S L GA   + +++  A      IAITD N L   +     A   GI  
Sbjct: 2    GYSELQVTSNFSFLRGASHPDELVETAARLGYAKIAITDRNTLAGIVRGHVAAQKHGIGF 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I  C                +      PS++   +    Y RL  L+S   L    +   
Sbjct: 62   IPAC----------------RLDLLDGPSLLAYPTDLAAYSRLSSLLSVGNL----RAEK 101

Query: 130  RICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN-L 186
              CL + Q++   TEG+  +    +       F        K    +  L  D+L++  +
Sbjct: 102  GKCLLYRQDVFEHTEGIFFIIIPPAELDSSFNFPADFTDDLKDYQQY--LPSDKLFLAAV 159

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
            + ++G D+ R  ++ QL+    +PL ATN+  +   E  E  D+L  +     + Q   +
Sbjct: 160  RSYQGNDQKRLYRLQQLSDRLGIPLAATNDVHYHIAERRELQDILTCIREKCTIYQAGFK 219

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +LK+  EM  +F   P+A+ NT +IA  C F L     + P  +  E     +
Sbjct: 220  LHANAERHLKSVKEMERLFMQYPDAIANTRKIADVCDFSLTDLKYVYPDELTSEG----R 275

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + EL      G + R  +        + +  +++  EL  + +   + YFL V D ++
Sbjct: 276  TPQQELEYLTWIGAQERFGESI------SHELTEQIGEELAFMKKNNLANYFLTVHDLVR 329

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A SV  Y L IT +DP R  LLF RF++  R   PD D+DF  +
Sbjct: 330  YARSKDI-LCQGRGSAANSVVCYCLGITSVDPTRIKLLFARFMSDARNEPPDIDVDFEHE 388

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG +R A + T    + K A+RDVG+A+ +    +  L   +    + 
Sbjct: 389  RREEVIQYIYEKYGRDRAAVVATVTQERYKGAIRDVGKAMGLSVDTISSLSSGVWRYSSE 448

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +    + +    +     D  + + L+++++L G  R    H  G VI    LS L P+
Sbjct: 449  WLENVDLIE----QGLNSKDLHLRKTLDLTRQLMGFPRQLGQHTGGFVITQGKLSNLCPI 504

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG----VKVDLSLI 601
                       ++N + IE  G IK D L L  LT ++K+ +   +         D+S  
Sbjct: 505  MNARMEGRTCIEWNKEDIEALGFIKVDVLALGMLTCIRKAFNLAKKHYGLDLNLADISRN 564

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
                 E Y +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D + 
Sbjct: 565  EDKHPEVYEMISQADTIGVFQIESRAQMSMLPRLKPKKFYDLVVEVAIVRPGPIQGDMVH 624

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+     I    P ++ +LK T GV ++QEQ M+IA + +G++ +EAD LRR+M  
Sbjct: 625  PYLLRRQDPSLIKYP-PKLENILKRTNGVPLFQEQAMEIAIVAAGFTPAEADELRRSMAT 683

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K   ++   +++ + G   NG  K  A  +F+ +  F  YGF +SHAA++A++ Y ++W
Sbjct: 684  FKSHGKVSIFRQKLVDGMVGNGYEKAFAERVFKQIEGFGSYGFPESHAASFALLVYVSSW 743

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI--- 835
            +K +YP  F AA +        +  +   DAR+  +++ P  +N    D+ + +      
Sbjct: 744  IKCYYPDIFAAAILNSLPMGFYQPAQLVIDARKHGVEVRPVDINYSFWDYVLEEQAGKYR 803

Query: 836  --YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
                    + G+       ++     KP+ ++    +      L+   LE L  A A   
Sbjct: 804  ALRLGFRQVNGLNIEDMELLVAHRK-KPYSNITQLLN----IGLSISCLEKLADADAFRS 858

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVR 951
             G  R Q L           W      +    +F  +        +ITL   +   S   
Sbjct: 859  IGLDRRQAL-----------WEIAALADSPLALFEGQPSQSMLEPQITLPLLT---SGEH 904

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +          HPL++ +  L  + +    +  A   G  +++A +++ +Q+  T K
Sbjct: 905  VVQDYVSTSLSLKAHPLNLLRQQLDLLKVTSTRDLDAVPDGAQVKVAGLILIRQRPGTAK 964

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G  + ++T  +         +
Sbjct: 965  G--VCFITIEDETGYSNVIVW 983


>gi|240142402|ref|YP_002966912.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1]
 gi|240012346|gb|ACS43571.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1]
          Length = 1316

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1092 (35%), Positives = 594/1092 (54%), Gaps = 87/1092 (7%)

Query: 5    LEKSPSFVHLQVHSSYSL---LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            +   P FVHL V S +S      G   +  ++ + AA  QPA+A+TD  N+F   +FS  
Sbjct: 1    MTDRP-FVHLNVLSDFSFSHGTRGVSGVKELVARAAALGQPALALTDDMNMFGVYKFSSA 59

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   G+QPI+G ++ +                    ++ LL S+  GY  L  L+     
Sbjct: 60   AAEKGVQPIVGTKIWVRAG-----------ATNVFGTMQLLASSETGYVNLCRLLKVALF 108

Query: 122  LD-QGKQSVRICLSW------LQEIGTEGLIMLTGGSSGPIDRAF--FFNSSQVAEKRLL 172
             D +G+ S     S+      L    ++ ++ L+GG  G + R +     ++Q A   L 
Sbjct: 109  PDAEGRISAHKDRSYVQLGHLLNAEYSQDVVCLSGGKDGFMSRVWDAARQNAQGAADWLS 168

Query: 173  T------FKKLFGDRLYVNLQRHR---GYDRYRESQVVQLAYTHELPLVATNNSLFLSEE 223
                      +FGDR +  + R+      D  RE+ ++  A     P+VAT   L+ +EE
Sbjct: 169  WVEDPGGLAAVFGDRFFFEICRNGVETDEDFAREAWLLDTAARQGRPVVATTQVLYAAEE 228

Query: 224  DYEAHDVLMAVA---HSTVVSQKD--RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
             ++A ++L AVA   + ++       R RV   +++++ +EM  +F+DLP A +N +E+A
Sbjct: 229  RHDALEILSAVARKENGSITVGPGTLRARVEARYHMRSDAEMRELFADLPTAYDNALEVA 288

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
            R  +F +    P LPRF     D   + E  EL ++A  GLE R  +   ++    Q+YR
Sbjct: 289  RCTAFKVAKRKPRLPRF-----DAAGRSEREELVHQARTGLEERFGELGTSEEA-RQEYR 342

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             RL+FEL VI +M F GYFLIV+DFI+WA  +++PVGPGRGSGAGS+ AYAL IT++DPL
Sbjct: 343  DRLEFELGVIGKMGFDGYFLIVSDFIKWALAHDVPVGPGRGSGAGSLVAYALRITNLDPL 402

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
            RF LLFERFLNPDR+SMPDFDIDFC   R  V++YV+ +YG + V+QI +FG +++K A+
Sbjct: 403  RFGLLFERFLNPDRVSMPDFDIDFCIQGRASVVQYVRERYGSDLVSQIASFGEIKSKTAI 462

Query: 459  RDVGRA------LQMPYSQVDRLCKLIPNDPAHPVSLQAIADD-SRFREARLADPSVDRL 511
            +D GR           YS+ D + KL+P    +P +L+   D+    R+   A      L
Sbjct: 463  KDAGRVLTHERDGSYGYSETDGMTKLVPMVQGNPYTLKRAYDEIPDLRQFVDASEKTRVL 522

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
             + ++K+EGL R    HAAGI+IGD PL +L+P+  +    +P+ QF++K  E  GL+KF
Sbjct: 523  FDNARKIEGLLRQRGVHAAGILIGDVPLEELLPVTWNATDGMPLAQFDLKGAEDVGLVKF 582

Query: 572  DFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            DFLGL+TL++L+ +  ++   RGV +D   IP DD   Y +     T  IFQ ES GM++
Sbjct: 583  DFLGLETLSVLKLARQYVKDSRGVDLDFDKIPLDDAGVYEIFARGMTNAIFQFESGGMKR 642

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL--IDPMLKETQGV 688
            AL  M+P  IED+IA  +LYRPGP++ I VYN+ KNG+++     P     P+L+ET G+
Sbjct: 643  ALREMKPTRIEDLIAANALYRPGPMEMIPVYNDCKNGRQEPDYPEPREKTKPILEETFGI 702

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++YQEQVM +A+ ++G +L +AD+LRRAMGKKIK EMD QK  F+ GA ++G S   A  
Sbjct: 703  MVYQEQVMAVARAVAGLTLGQADLLRRAMGKKIKAEMDAQKAGFVKGALEHGTSARTAEE 762

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE--MDNVEKIKKFC 806
            +F+ +AKFA+YGFNKSH+AAYA+I+Y T W+K HYP EF AA ++ E   +NV ++    
Sbjct: 763  LFDKIAKFAEYGFNKSHSAAYALIAYHTGWLKKHYPQEFYAAVLSFEAAKNNVHEMSLVK 822

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGD----NRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            +D   F I ++PP VN     F          I + L  IKG+       + E  A+ PF
Sbjct: 823  EDLDAFGIPLLPPDVNRSTGQFAPERTEQGGAIRFGLVGIKGLSGGIDAMVAEREANGPF 882

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF--------GYSRMQLLQSLDNIQKYAQW 914
             ++ DF  R      NR  +E+L   GA              +R +        Q +A  
Sbjct: 883  RTVADFGRRTAGL-FNRSQIENLAAVGAFVGLPIVAGGPPETNRAKA---AIAAQFFANG 938

Query: 915  VEKNRTN-KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
             ++   +     +FA E+ T  +++  E  S        + E R +GFYF  HPL + +P
Sbjct: 939  AKREAKSTDQFGLFAAEE-TAREELPEEMHSTAEWPDIPDREFRAVGFYFDQHPLKMLRP 997

Query: 974  ILRKMGIKGYE----------ESVATIRGNNIR--LAAMVVSKQQKKTRKGSRIGWVTFS 1021
             + K  ++  +          E +   R +  R  + AM+ + ++  T +G R+  V  S
Sbjct: 998  RMAKADLENEDVRVGTRGSVYEIMTARRESETRAVVVAMIENVRKTTTERGPRLD-VEAS 1056

Query: 1022 EPAKEYEANFFP 1033
            +    Y    +P
Sbjct: 1057 DTTGNYRFYVYP 1068


>gi|289425592|ref|ZP_06427368.1| error-prone DNA polymerase [Propionibacterium acnes SK187]
 gi|289153998|gb|EFD02687.1| error-prone DNA polymerase [Propionibacterium acnes SK187]
          Length = 1137

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/1076 (26%), Positives = 470/1076 (43%), Gaps = 105/1076 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HSSYS L+GA +  +++ +        +A+TD + L+  +  ++ A A G+  
Sbjct: 59   PYAELHCHSSYSFLDGASNPEDLVIRAVELGLSGLALTDHDGLYGVVRMAEAAEACGLST 118

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128
            IIG +L I + +      Q     P    +++L +  EGY+RL E ++  YL++ G K  
Sbjct: 119  IIGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTDAYLVEGGRKGR 173

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
                L  L E+      +LTG   G + +       Q AE  L     LF  D + V L 
Sbjct: 174  PVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGMLQ-AEAELRRLVDLFGIDNVLVELT 232

Query: 188  RHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
             HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV     + + D  
Sbjct: 233  DHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVRARRSLDEMDGW 292

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                P   L++ +EM  +FS   +A++NTV +A R +F L     + PR  +++  D   
Sbjct: 293  LPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHL---KSVRPRLPDQKVPD-GH 348

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR+    G         +AK         RL  EL++I    F+GYFLIV+D ++
Sbjct: 349  TPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDRGFAGYFLIVSDIVE 400

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  R   PD D+DF   
Sbjct: 401  FAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREEEPDIDVDFDAR 459

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D   + +      
Sbjct: 460  RREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDAWSRQMERRSVP 519

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            P+      D              D +  ++Q++ GL RH   H+AG+V+   P+ ++ P+
Sbjct: 520  PLPHD--PDGPEIP---------DDVTTLAQQVMGLPRHLGIHSAGMVLTREPVGRICPI 568

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                     V Q++ +     GL+KFD LGL  L+ L  S D ++Q       L+ IP +
Sbjct: 569  EPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCGRFWTLASIPRN 628

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYN 662
            +   Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPGP+       Y 
Sbjct: 629  EPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPGPVQGGAVHPYI 688

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKI 721
             R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD+LRRAM  K+ 
Sbjct: 689  RRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADADLLRRAMGSKRG 748

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E +D  + +   G + NGI    A  I+  +  FA++GF +SHA ++A + Y +AW+K 
Sbjct: 749  VERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFAGLVYTSAWIKL 808

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------- 831
            HYP  FLAA +  +            DAR+  +    P V    V   +           
Sbjct: 809  HYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADLELLDACCEELG 868

Query: 832  ------------------------------------DNRIYYSLAAIKGVGTTTARHIME 855
                                                   +   L+ + G+   TA  I+E
Sbjct: 869  SEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSGINIETATRIVE 928

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
                + F SL+D   RVD        +E+L  AGA D    SR   L  +  I   A   
Sbjct: 929  ERERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQIGQINGVAPGQ 985

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
               +      +                           ++ R  G   + HP+   +  L
Sbjct: 986  LDVQVVTQPPLL----------------PEPTQMELLGDDLRATGISTADHPVRQVRDAL 1029

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             + G+   +          I +A +V  +Q+  T  G  + ++   +         
Sbjct: 1030 NRRGVVQVDRLDGVETRRRIEVAGVVTHRQRPGTAGG--VTFLNLEDETGLLNVIV 1083


>gi|50843116|ref|YP_056343.1| error-prone DNA polymerase [Propionibacterium acnes KPA171202]
 gi|295131169|ref|YP_003581832.1| DNA polymerase III, alpha subunit [Propionibacterium acnes SK137]
 gi|71151831|sp|Q6A780|DNAE2_PROAC RecName: Full=Error-prone DNA polymerase
 gi|50840718|gb|AAT83385.1| DNA polymerase III, alpha chain [Propionibacterium acnes KPA171202]
 gi|291376583|gb|ADE00438.1| DNA polymerase III, alpha subunit [Propionibacterium acnes SK137]
          Length = 1134

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/1076 (26%), Positives = 470/1076 (43%), Gaps = 105/1076 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HSSYS L+GA +  +++ +        +A+TD + L+  +  ++ A A G+  
Sbjct: 56   PYAELHCHSSYSFLDGASNPEDLVIRAVELGLSGLALTDHDGLYGVVRMAEAAEACGLST 115

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128
            IIG +L I + +      Q     P    +++L +  EGY+RL E ++  YL++ G K  
Sbjct: 116  IIGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTDAYLVEGGRKGR 170

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
                L  L E+      +LTG   G + +       Q AE  L     LF  D + V L 
Sbjct: 171  PVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGMLQ-AEAELRRLVDLFGIDNVLVELT 229

Query: 188  RHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
             HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV     + + D  
Sbjct: 230  DHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVRARRSLDEMDGW 289

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                P   L++ +EM  +FS   +A++NTV +A R +F L     + PR  +++  D   
Sbjct: 290  LPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHL---KSVRPRLPDQKVPD-GH 345

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR+    G         +AK         RL  EL++I    F+GYFLIV+D ++
Sbjct: 346  TPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDRGFAGYFLIVSDIVE 397

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  R   PD D+DF   
Sbjct: 398  FAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREEEPDIDVDFDAR 456

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D   + +      
Sbjct: 457  RREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDAWSRQMERRSVP 516

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            P+      D              D +  ++Q++ GL RH   H+AG+V+   P+ ++ P+
Sbjct: 517  PLPHD--PDGPEIP---------DDVTTLAQQVMGLPRHLGIHSAGMVLTREPVGRICPI 565

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                     V Q++ +     GL+KFD LGL  L+ L  S D ++Q       L+ IP +
Sbjct: 566  EPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCGRFWTLASIPRN 625

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYN 662
            +   Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPGP+       Y 
Sbjct: 626  EPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPGPVQGGAVHPYI 685

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKI 721
             R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD+LRRAM  K+ 
Sbjct: 686  RRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADADLLRRAMGSKRG 745

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E +D  + +   G + NGI    A  I+  +  FA++GF +SHA ++A + Y +AW+K 
Sbjct: 746  VERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFAGLVYTSAWIKL 805

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------- 831
            HYP  FLAA +  +            DAR+  +    P V    V   +           
Sbjct: 806  HYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADLELLDACCEELG 865

Query: 832  ------------------------------------DNRIYYSLAAIKGVGTTTARHIME 855
                                                   +   L+ + G+   TA  I+E
Sbjct: 866  SEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSGINIETATRIVE 925

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
                + F SL+D   RVD        +E+L  AGA D    SR   L  +  I   A   
Sbjct: 926  ERERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQIGQINGVAPGQ 982

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
               +      +                           ++ R  G   + HP+   +  L
Sbjct: 983  LDVQVVTQPPLL----------------PEPTQMELLGDDLRATGISTADHPVRQVRDAL 1026

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             + G+   +          I +A +V  +Q+  T  G  + ++   +         
Sbjct: 1027 NRRGVVQVDRLDGVETRRRIEVAGVVTHRQRPGTAGG--VTFLNLEDETGLLNVIV 1080


>gi|312871433|ref|ZP_07731528.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 3008A-a]
 gi|311093086|gb|EFQ51435.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 3008A-a]
          Length = 1040

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/1028 (32%), Positives = 524/1028 (50%), Gaps = 46/1028 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6    LQNISSFTLLKSPISIEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            Q          +   G         ++++     GYQ ++ L S + L  + GK+ + + 
Sbjct: 66   Q----------LRINGLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
            L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116  LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
                Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +       +  
Sbjct: 175  SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLQSIDDNQSIRDGYELTLKH 233

Query: 250  -PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +HYLK + ++   ++ L   EAL NT ++    +  ++   P LP+FI+ + D     
Sbjct: 234  VGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD----T 289

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L + A+ GL+ +       K      Y  RL +EL +I  M F+ YFLIV D I +
Sbjct: 290  SYEFLHHLAMTGLQAKF-----NKHDIPAKYLNRLKYELKIIDEMGFNDYFLIVWDVINY 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
                 I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   +R
Sbjct: 345  CHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARQQMPDIDLDIPDNR 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       ++   K IP   +  
Sbjct: 405  RNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKSKI 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V + 
Sbjct: 465  TLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQ 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                  +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP DD 
Sbjct: 525  NGSL-GIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLDDP 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  RKN
Sbjct: 584  ATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +EK+V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   EM 
Sbjct: 644  KEEKVVYPDPVLINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSIEMK 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K    F++ A K G S + A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP +
Sbjct: 704  KIGVDFVNRAVKQGHSASAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQ 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY-SLAAIKGV 845
            F  A +   + + +K+ K+  D +  NI+I  P +N    +F + D       L +I G+
Sbjct: 764  FYVALLNSNIYDKQKVTKYIMDLKLDNIKITLPDINYSKRNFYISDKGEIVTGLNSILGL 823

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                   IM     +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL S 
Sbjct: 824  RMDFVEQIMN--LQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLASY 881

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             ++      V    +  +  +F   +    D        + +++ + E E  VLGF    
Sbjct: 882  KDLL-----VCIKMSGGNNVLFQALEPKELD------IKMPSNAQKEEWETSVLGFSPQI 930

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             P+   +   +K G K + +      G ++     ++  +   T+   ++ +  F++  +
Sbjct: 931  DPILAAQIYAKKYGFKPFSDFTFYDEGVSV---GKMMDIKVITTKNNKKMAFAKFNDLHE 987

Query: 1026 EYEANFFP 1033
              +   FP
Sbjct: 988  TVDFVIFP 995


>gi|329733207|gb|EGG69544.1| putative DNA polymerase III subunit alpha [Staphylococcus aureus
            subsp. aureus 21193]
          Length = 1065

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/1025 (31%), Positives = 520/1025 (50%), Gaps = 83/1025 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L    +G + L +L S + +         +
Sbjct: 63   GMTIYVTNGLNTVET-------------VVLAKNNDGLKDLYQLSSEIKM----NALEHV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L+      +I+               +  +   +   T    + D L +++Q    
Sbjct: 106  SFELLKRFSNNMIII----------FKKVGDQHRDIVQVFETHNDTYMDHLSISIQ---- 151

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                                V   N  + + +D +    L A+  +T +      +    
Sbjct: 152  ----------------GRKHVWIQNVCYQTRQDADTISALAAIRDNTKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +     E+  +  D+  E L     IA++C+  L+ H  +LP++     +         
Sbjct: 195  AHFLTEKEIKQL--DINQEYLTQVDVIAQKCNAELKYHQSLLPQYETPNDES-------- 244

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                A   L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N
Sbjct: 245  ----AKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTN 300

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ V
Sbjct: 301  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERV 360

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L 
Sbjct: 361  IQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLD 418

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +   
Sbjct: 419  EAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDT 478

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + +
Sbjct: 479  G--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVF 536

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   
Sbjct: 537  ELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPS 596

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ ++
Sbjct: 597  KVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESER 656

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA +NG  + I+  IF+L+ KF+DYGF ++HA +Y+ I+Y  +++K HYP  F A
Sbjct: 657  QHFIEGAKQNGYHEDISKQIFDLILKFSDYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYA 716

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  +
Sbjct: 717  NILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQS 776

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +
Sbjct: 777  VKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQV 836

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  +E++       +F       + K   E       ++  + E+  LGFY S HP+
Sbjct: 837  LDGDLNIEQD-----GFLF----DILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPV 887

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            D  K  + K  +  ++          I +       +Q +T+ G  + +VT ++  +  +
Sbjct: 888  D--KKFVAKQYLTIFK-LSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLD 942

Query: 1029 ANFFP 1033
               FP
Sbjct: 943  GVIFP 947


>gi|297590764|ref|ZP_06949402.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus MN8]
 gi|297575650|gb|EFH94366.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus MN8]
          Length = 1065

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1024 (31%), Positives = 519/1024 (50%), Gaps = 81/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L     G + L +L S + +         +
Sbjct: 63   GMTIYVTNGLNNIET-------------VVLAKDNYGLKDLYQLSSEIKM----NALEHV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L+      +I+             F N +      +  F                 
Sbjct: 106  SFELLKRFSNNMIII-------------FKNVADEHRDIVRVFDSH-------------- 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y + + V +     +  V   +  + +  D +    L A+  +T +      +    
Sbjct: 139  EDTYLDHRSVLV---QGIKHVWIQDVCYQTRHDADTISALAAIRDNTKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +    +E+  +    PE       IA++C+  L+ H  +LP++     +  +K      
Sbjct: 195  AHFLTENEIHQL-DVNPEYFTQADRIAQKCNAELKYHQSLLPQYQTPNDESAKKY----- 248

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                   L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N+
Sbjct: 249  -------LWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTND 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L  
Sbjct: 362  QYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDE 419

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +    
Sbjct: 420  AYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG 479

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + 
Sbjct: 480  --LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFE 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K
Sbjct: 538  LLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSK 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++
Sbjct: 598  VQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G  +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A 
Sbjct: 658  HFIEGTKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + 
Sbjct: 718  ILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSV 777

Query: 851  RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+E    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D + 
Sbjct: 778  KVIVEERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVL 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 +E++       +F       + K   E       ++  + E+  LGFY S HP+D
Sbjct: 838  DGDLNIEQD-----GFLF----DILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD 888

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              K  + K  +  ++          I +       +Q +T+ G  + +VT ++  +  + 
Sbjct: 889  --KKFVAKQYLTIFK-LSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDG 943

Query: 1030 NFFP 1033
              FP
Sbjct: 944  VIFP 947


>gi|282916962|ref|ZP_06324720.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            D139]
 gi|282319449|gb|EFB49801.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            D139]
          Length = 1065

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1025 (31%), Positives = 519/1025 (50%), Gaps = 83/1025 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L     G + L +L S++ +         +
Sbjct: 63   GMTIYVTNGLNTIET-------------VVLAKDNNGLKDLYQLSSKIKINSMEN----V 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                LQ+  +  +I+             F N +      +  F                 
Sbjct: 106  SFELLQQFSSNLIII-------------FKNVADEHRDIVQVFDSH-------------- 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y + + V +     +  V   N  + + +D +    L A+  +T +      +    
Sbjct: 139  EDTYLDHRSVLV---QGIKHVWIQNVCYQTRQDADTISALAAIRDNTKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +     E+  +  D+  E L     IA++C+  L+ H  +LP++     +         
Sbjct: 195  AHFLTEKEIKQL--DINQEYLTQVDAIAQKCNAELKYHQSLLPQYQTPNDES-------- 244

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                A   L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N
Sbjct: 245  ----AKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTN 300

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ V
Sbjct: 301  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERV 360

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L 
Sbjct: 361  IQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLD 418

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +   
Sbjct: 419  EAYQIDNFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDT 478

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFD+ + +
Sbjct: 479  G--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDNQKVF 536

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   
Sbjct: 537  ELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPS 596

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ ++
Sbjct: 597  KVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESER 656

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A
Sbjct: 657  QHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYA 716

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  +
Sbjct: 717  NILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQS 776

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +
Sbjct: 777  VKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQV 836

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  +E++       +F       + K   E       ++  + E+  LGFY S HP+
Sbjct: 837  LDGDLNIEQD-----GFLF----DILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPV 887

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            D    +          +         I +       +Q +T+ G  + +VT ++  +  +
Sbjct: 888  D---KMFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLD 942

Query: 1029 ANFFP 1033
               FP
Sbjct: 943  GVIFP 947


>gi|88195511|ref|YP_500316.1| DNA polymerase III subunit alpha superfamily protein [Staphylococcus
            aureus subsp. aureus NCTC 8325]
 gi|14194671|sp|Q9F1K0|DPO3A_STAA8 RecName: Full=DNA polymerase III subunit alpha
 gi|12082345|dbj|BAB20884.1| DnaE [Staphylococcus aureus]
 gi|87203069|gb|ABD30879.1| DNA polymerase III, alpha subunit superfamily [Staphylococcus aureus
            subsp. aureus NCTC 8325]
 gi|329726967|gb|EGG63424.1| putative DNA polymerase III subunit alpha [Staphylococcus aureus
            subsp. aureus 21189]
          Length = 1065

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/1031 (31%), Positives = 519/1031 (50%), Gaps = 95/1031 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L    +G + L +L S + +         +
Sbjct: 63   GMTIYVTNGLNTVET-------------VVLAKNNDGLKDLYQLSSEIKM----NALEHV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L+      +I+               +  +   +   T    + D L +++Q    
Sbjct: 106  SFELLKRFSNNMIII----------FKKVGDQHRDIVQVFETHNDTYMDHLSISIQ---- 151

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                                V   N  + + +D +    L A+  +T +      +    
Sbjct: 152  ----------------GRKHVWIQNVCYQTRQDADTISALAAIRDNTKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +     E+  +  D+  E L     IA++C   L+ H  +LP++     +  +K     
Sbjct: 195  AHFLTEKEINQL--DINQEYLTQVDVIAQKCDAELKYHQSLLPQYETPNDESAKKY---- 248

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                    L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N
Sbjct: 249  --------LWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTN 300

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ V
Sbjct: 301  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERV 360

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L 
Sbjct: 361  IQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLD 418

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F+E    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +   
Sbjct: 419  EAYQIDDFKEFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDT 478

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + +
Sbjct: 479  G--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVF 536

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   
Sbjct: 537  ELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPS 596

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ ++
Sbjct: 597  KVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESER 656

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A
Sbjct: 657  QHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYA 716

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  +
Sbjct: 717  NILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQS 776

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +
Sbjct: 777  VKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQV 836

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  +E++       +F       + K   E       ++  + E+  LGFY S HP+
Sbjct: 837  LDGDLNIEQD-----GFLF----DILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPV 887

Query: 969  D------VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            D       Y  I +    + Y+  +                 +Q +T+ G  + +VT ++
Sbjct: 888  DKKFVAKQYLTIFKLSNAQNYKPILVQFDK-----------VKQIRTKNGQNMAFVTLND 936

Query: 1023 PAKEYEANFFP 1033
              +  +   FP
Sbjct: 937  GIETLDGVIFP 947


>gi|294665463|ref|ZP_06730748.1| DNA polymerase III alpha chain [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
 gi|292604762|gb|EFF48128.1| DNA polymerase III alpha chain [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
          Length = 1065

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/1055 (25%), Positives = 471/1055 (44%), Gaps = 89/1055 (8%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q  +  P++  L   S +S L GA S   +  +       A+AITD  +L   +   + 
Sbjct: 21   AQQADDLPAYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEA 80

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            + A G++ I+G +  +                     +VLLV  A GY +L  L++    
Sbjct: 81   SRATGVRLIVGSEFTLVDGIR----------------LVLLVENAHGYPQLCGLITTARR 124

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                K +  +  + +Q    +   ++ G     +   +   +   AE+     +++FG+R
Sbjct: 125  A-ASKGAYHLGRAEVQAQFRD---VVPG-----VFALWLPGAQPQAEQGA-WLQQVFGER 174

Query: 182  LYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ ++ HR  D   R   +  LA    +  +A+ +       +    D L A+ H+  +
Sbjct: 175  AFLAVELHREQDDVARLQVLQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRHTLPL 234

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            ++         + +L+ R  + +I+ D    L+ TVE+++RC+F +   +   PR +  E
Sbjct: 235  AECGAHLFRNGERHLRTRRALGNIYPDA--LLQATVELSQRCTFDISKISYTYPRELVPE 292

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                     + LR    AG+  R   G  AK       R+ ++ EL +IA   +  +FL 
Sbjct: 293  G----HTPTSYLRQLTEAGIRKRWPGGISAK------VREDIEKELALIAFKNYEAFFLT 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++A+  +I +  GRGS A S   YAL IT ++P    LL  RFL+  R   PD D
Sbjct: 343  VQDVVRFARDQDI-LCQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDID 401

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EV++YV +KYG ER A   T    + K+A+RDV +A  +P  Q+  L    
Sbjct: 402  VDFEHERREEVLQYVYSKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCY 461

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                      Q I +        LA+P ++++L +++ L    RH S H  G VI D PL
Sbjct: 462  GWGNGETPMEQRIEE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPL 517

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDL 598
            S LVP+      +  + Q++   +E   L+K D L L  LT ++K+L+ +   RG    +
Sbjct: 518  SLLVPVENAAMPNRTIIQWDKDDLETMQLLKVDCLALGMLTCIRKTLELVRGHRGRNYSI 577

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
            + +P DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D
Sbjct: 578  ATLPGDDAPTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGD 637

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+ G+E++    P ++ +LK T GV ++QEQVM++    + YS  EAD LRR+
Sbjct: 638  MVHPYLRRRQGREEVNYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYSEDEADNLRRS 697

Query: 717  MGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M    +  +M++ + R        G + +    IFE +  F  YGF +SHAA++A + Y 
Sbjct: 698  MAAWRRGGDMEQHRTRVRERMQGKGYASSFIDQIFEQIKGFGSYGFPQSHAASFAKLVYA 757

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-----QFNIQIMPPSVNTPCVDFKV 830
            + W+K H P  F    +  +        +  QDAR     +  ++++P  V     D  +
Sbjct: 758  SCWLKRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWDNTL 817

Query: 831  GDNRIY-------------YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
               R +               +  + G+    A+ I+ A   + F  + D C R     L
Sbjct: 818  VGGRPWRSAADPGEQPAIRLGMRQVAGLSQVVAQRIVAARTQRAFADIGDLCLRA---AL 874

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            + +   +L  AGAL     +R     ++  +                 +     G+  ++
Sbjct: 875  DEKARLALAEAGALQGMVGNRNAARWAMAGV------------EARRPLL---PGSPEER 919

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
                +F    +      + R +G     HP+ + +P +R+  I G  E      G+ + +
Sbjct: 920  PV--EFEAPRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRRHGSGVHV 977

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A +V  +Q+  T KG+   +VT  +         +
Sbjct: 978  AGLVTQRQRPATAKGT--IFVTLEDEQGMINVIVW 1010


>gi|283770780|ref|ZP_06343672.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            H19]
 gi|283460927|gb|EFC08017.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            H19]
          Length = 1065

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1025 (31%), Positives = 518/1025 (50%), Gaps = 83/1025 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L     G + L +L S++ +         +
Sbjct: 63   GMTIYVTNGLNTIET-------------VVLAKDNNGLKDLYQLSSKIKINSMEN----V 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                LQ+  +  +I+             F N +      +  F                 
Sbjct: 106  SFELLQQFSSNLIII-------------FKNVADEHRDIVQVFDSH-------------- 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y + + V +     +  V   N  + + +D +    L A+  +T +      +    
Sbjct: 139  EDTYLDHRSVLV---QGIKHVWIQNVCYQTRQDADTISALAAIRDNTKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +     E+  +  D+  E L     IA++C+  L+ H  +LP++     +         
Sbjct: 195  AHFLTEKEIKQL--DINQEYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDES-------- 244

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                A   L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N
Sbjct: 245  ----AKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTN 300

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ V
Sbjct: 301  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERV 360

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L 
Sbjct: 361  IQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLD 418

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +   
Sbjct: 419  EAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDT 478

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E  GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFD+ + +
Sbjct: 479  G--LLTQWTMTEAEHIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDNQKVF 536

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   
Sbjct: 537  ELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPS 596

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ ++
Sbjct: 597  KVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESER 656

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A
Sbjct: 657  QHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYA 716

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  +
Sbjct: 717  NILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQS 776

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +
Sbjct: 777  VKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQV 836

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  +E++       +F       + K   E       ++  + E+  LGFY S HP+
Sbjct: 837  LDGDLNIEQD-----GFLF----DILTPKQMYEDKEELPDALISQYEKEYLGFYVSEHPV 887

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            D    +          +         I +       +Q +T+ G  + +VT ++  +  +
Sbjct: 888  D---KMFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLD 942

Query: 1029 ANFFP 1033
               FP
Sbjct: 943  GVIFP 947


>gi|187478521|ref|YP_786545.1| error-prone DNA polymerase [Bordetella avium 197N]
 gi|115423107|emb|CAJ49638.1| putative DNA polymerase III alpha subunit [Bordetella avium 197N]
          Length = 1048

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/1036 (26%), Positives = 442/1036 (42%), Gaps = 67/1036 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-GI 67
            P +  L   S++S L GA     ++++ A     A+AITD  +L   +    +A    G+
Sbjct: 6    PGYAELDCQSNFSFLTGASHPEELVERAAKLGYAALAITDECSLAGVVRAHVEAGKHPGL 65

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + +I           L++ N   TP      +VLL    EGY  L EL++        K 
Sbjct: 66   KLLI--------GSRLRLDNGTHTPIE----LVLLACDKEGYGNLAELITLGRTR-AVKG 112

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
               +  + L   G EG   + G  +  I    +  +      +     + F  R +V L 
Sbjct: 113  QYLLRPADLTAQGPEG--GVPGCLA--ILTPAYGQAPAEMAAQAQWLARHFPGRAWVGLA 168

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            Q  R  D    + V   A    LPL A + +          HD L A+     V++    
Sbjct: 169  QLQRSRDDLHRAAVQAAAQAANLPLAAISQAQMHVRSRKPLHDTLAAIRSGRSVAECGYD 228

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +L++R  +  ++     AL  T+ IA RC+F L       P  I    +    
Sbjct: 229  LAANAERHLRSRLRLAGLYP--ASALHQTLAIAERCTFSLDEIRYEYPDEIVPAGE---- 282

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     G   R   G  A+       R  ++ EL +I  +++  YFL V D ++
Sbjct: 283  TPASYLRRATYEGAAARFPDGIPAQ------VRNLIEKELALIIELRYEAYFLTVHDIVR 336

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   + L IT +DP   + LFERF++ +R   PD D+DF   
Sbjct: 337  FARSAGI-LCQGRGSAANSAVCFCLGITAVDPSNGNALFERFISKERNEPPDIDVDFEHQ 395

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG  R A      S + ++ LRD GRAL +  + +D + +        
Sbjct: 396  RREEVIQYIYRKYGRPRAALTAVVISYRPRSVLRDTGRALGLDQALIDAVARAHQWWDGK 455

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L+ +        +R+A     +   +++ L G  RH S H  G VI    LS+LVP+
Sbjct: 456  KEMLRTLGQCGLDPGSRVA----RQWAILAETLIGFPRHLSQHPGGFVISRGKLSRLVPI 511

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFD 604
                  D  V Q++   ++  GL+K D L L  L+ L+++L+ ++QR  +   L  IP D
Sbjct: 512  ENATMEDRSVVQWDKDDLDALGLLKVDVLALGMLSALRRALELVSQRRAQPLALHQIPPD 571

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
            D  TY ++    T+G+FQ+ES      L  +QP    D++  V++ RPGPI   +   Y 
Sbjct: 572  DRATYDMICRADTVGVFQIESRAQMSMLPRLQPRAYYDLVVQVAIVRPGPIQGGMVHPYL 631

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+ GKE I      I+ +L+ TQGV I+QEQVMQIA   +G++  EAD LRR+M   + 
Sbjct: 632  RRRQGKEPISYPGKAIEKVLERTQGVPIFQEQVMQIAVEAAGFTPGEADQLRRSMAAWRR 691

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  +DK + + I G   +G     A  +F  +  F +YGF +SHAA++A ++Y +AW+K 
Sbjct: 692  KGGVDKFRLKLIGGLLAHGYGLDFAEALFRQIEGFGEYGFPESHAASFAQLAYASAWIKC 751

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRI 835
            H P  FLAA +  +        +  QDAR+  + ++P  +     +             +
Sbjct: 752  HEPEAFLAALLNSQPMGFYAPAQLVQDARRHGVVVLPVDITRSRWEAGFETLPGQSRPAV 811

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L   +G+       I  A  ++P+  + D   R    +     L +          G
Sbjct: 812  RLGLNQTRGLKQEAGERIAAAHREQPYRDVADLGRRARLNRQELDALAAADALRP--LAG 869

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
            + R    Q+   + +              ++        ++   L   S   + V    +
Sbjct: 870  HRRQARWQAASGVYRR-------------DLLHEAPVIETEHPALPAPSEGQTVV---AD 913

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
               LG     HPL + +  L +   +              R   +V  +Q+ +T KG+  
Sbjct: 914  YESLGLSLRRHPLSLLRAELAERRFEPASVLNTYPDRRLARACGIVTVRQRPQTAKGT-- 971

Query: 1016 GWVTFSEPAKEYEANF 1031
             +VT  +         
Sbjct: 972  IFVTIEDETGPVNVVV 987


>gi|294851474|ref|ZP_06792147.1| error-prone DNA polymerase [Brucella sp. NVSL 07-0026]
 gi|294820063|gb|EFG37062.1| error-prone DNA polymerase [Brucella sp. NVSL 07-0026]
          Length = 1085

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/1052 (24%), Positives = 438/1052 (41%), Gaps = 76/1052 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAA 65
             +  +   S++S L GA     ++++  A     I I D N L   +    +       +
Sbjct: 4    PYFEMAAASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQWKDIRKES 63

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G +  IGC         L       +     P +V+       Y +L  L++        
Sbjct: 64   GFRLFIGC--------RLSFIGCRLSFIDGTPDMVVYPRDRAAYGQLCRLLTEGKHRAAI 115

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            K    +  + L     +  I +        D A           RL    +     +++ 
Sbjct: 116  KGECHLEWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLA 165

Query: 186  L-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L   H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    
Sbjct: 166  LTMPHQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAG 225

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R      + +LK   EMV +F D PEA+  T +     +F L       P          
Sbjct: 226  RLLEKNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG--- 282

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             K  +  L +    G         I         +  ++ EL +IAR+++  YFL V D 
Sbjct: 283  -KTAQQHLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDI 336

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +  A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF 
Sbjct: 337  VTHAREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFE 395

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +    
Sbjct: 396  HERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLS 455

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  Q I    R       +P + R +E++  L G  RH S H  G V+    L + V
Sbjct: 456  GGGIDRQHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETV 511

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VD 597
            P+           +++   I++ GL+K D L L  LT ++K+ D + Q   +      + 
Sbjct: 512  PIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLT 571

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            L+ +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 572  LASLPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQG 631

Query: 656  DNIVVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            D +  Y  R++G+E      P         +  +L +T+GV ++QEQ M+IA   + ++ 
Sbjct: 632  DMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTP 691

Query: 708  SEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             EA+ LRRAM   +    +   +++ I G    G  +T A N F  +  F +YGF +SHA
Sbjct: 692  EEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHA 751

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    
Sbjct: 752  ASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQW 811

Query: 827  DFKVG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
            D  +         +      I G        ++    + P+ ++ED   R+     +RR 
Sbjct: 812  DNILEETPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRLRL---DRRA 867

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
               L  A A       R   L ++  +            ++   +F     +   +    
Sbjct: 868  FTLLADADAFGSLDIDRRAALWAVRRLP----------NDETLPLFRAAAASELAQEPRT 917

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            K     +S     +         GHPL   +  L   G+           G  +++A +V
Sbjct: 918  KLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVV 977

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +Q+  + KG  + ++T  +         +P
Sbjct: 978  TVRQRPGSAKG--VVFLTIEDETGIANIVIWP 1007


>gi|21283375|ref|NP_646463.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            MW2]
 gi|49486528|ref|YP_043749.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            MSSA476]
 gi|297207585|ref|ZP_06924020.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus ATCC 51811]
 gi|300911666|ref|ZP_07129110.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus TCH70]
 gi|38604909|sp|Q8NW58|DPO3A_STAAW RecName: Full=DNA polymerase III subunit alpha
 gi|60392206|sp|Q6G8M4|DPO3A_STAAS RecName: Full=DNA polymerase III subunit alpha
 gi|21204815|dbj|BAB95511.1| DNA POLYMERASE III ALPHA SUBUNIT [Staphylococcus aureus subsp. aureus
            MW2]
 gi|49244971|emb|CAG43432.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            MSSA476]
 gi|296887602|gb|EFH26500.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus ATCC 51811]
 gi|300887087|gb|EFK82288.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus TCH70]
          Length = 1065

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1025 (31%), Positives = 519/1025 (50%), Gaps = 83/1025 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L    +G + L +L S + +         +
Sbjct: 63   GMTIYVTNGLNTVET-------------VVLAKNNDGLKDLYQLSSEIKM----NALEHV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L+      +I+               +  +   +   T    + D L +++Q    
Sbjct: 106  SFELLKRFSNNMIII----------FKKVGDQHRDIVQVFETHNDTYMDHLSISIQ---- 151

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                                V   N  + + +D +    L A+  +T +      +    
Sbjct: 152  ----------------GRKHVWIQNVCYQTRQDADTISALAAIRDNTKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +     E+  +  D+  E L     IA++C   L+ H  +LP++     +         
Sbjct: 195  AHFLTEKEINQL--DINQEYLTQVDVIAQKCDAELKYHQSLLPQYETPNDES-------- 244

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                A   L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N
Sbjct: 245  ----AKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTN 300

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ V
Sbjct: 301  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERV 360

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L 
Sbjct: 361  IQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLD 418

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +   
Sbjct: 419  EAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDT 478

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + +
Sbjct: 479  G--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVF 536

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   
Sbjct: 537  ELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPS 596

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ ++
Sbjct: 597  KVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESER 656

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A
Sbjct: 657  QHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYA 716

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  +
Sbjct: 717  NILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQS 776

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +
Sbjct: 777  VKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQV 836

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  +E++       +F       + K   E       ++  + E+  LGFY S HP+
Sbjct: 837  LDGDLNIEQD-----GFLF----DILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPV 887

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            D  K  + K  +  ++          I +       +Q +T+ G  + +VT ++  +  +
Sbjct: 888  D--KKFVAKQYLTIFK-LSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLD 942

Query: 1029 ANFFP 1033
               FP
Sbjct: 943  GVIFP 947


>gi|162146502|ref|YP_001600961.1| putative error-prone DNA polymerase [Gluconacetobacter diazotrophicus
            PAl 5]
 gi|161785077|emb|CAP54621.1| putative Error-prone DNA polymerase [Gluconacetobacter diazotrophicus
            PAl 5]
          Length = 1069

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/1043 (25%), Positives = 452/1043 (43%), Gaps = 66/1043 (6%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            ++  E  PS+  LQ  ++YS L GA   + +  +  A    A+ I D + +   ++  + 
Sbjct: 15   SEKEESLPSYAELQAVTNYSFLRGASHPDELFARARALGHAALGIVDHDGVAGIVQSWKA 74

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   G++ ++GC                +      P ++   +    + RL  L++    
Sbjct: 75   AEKHGVRLVVGC----------------RLVLRDGPPLLAYPTDRAAWGRLCRLLTASKR 118

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR-LLTFKKLFGD 180
                  +  +  + L    T+GLI++              +    A  R L   + L GD
Sbjct: 119  KAADGTAPGLRRADL-HRATDGLILIL-----------LPDDPDAALARDLDWLRALCGD 166

Query: 181  RLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R Y+ L  R R  D  R  ++ ++A    +  V T + L+         DVL  +     
Sbjct: 167  RGYLALTLRRRPGDAVRLHRLAEMARAAGVADVVTGDVLYHEPARAMLQDVLTCIRTGCT 226

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            + +  +      D +LK+ +EM  +++  P AL  T EIA RC+F         P    +
Sbjct: 227  IDELGQGREAYADRHLKSPAEMAVLYAAHPAALARTREIAARCTFSPADLRYQYP----E 282

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E DD  +  ++ L   A A L  R   GA          R+++++EL +I  + ++ YFL
Sbjct: 283  ESDDPSETPQDRLERLARAALRDRYPAGA------PDPVRRQVEYELGLIRDLHYAPYFL 336

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
             V   ++ A+   I +  GRGS A S   + L IT+IDP   +LLFERF++ +R   PD 
Sbjct: 337  TVHTIVRQARSQGI-LCQGRGSAANSAVCFVLGITEIDPASSNLLFERFVSAERQEPPDI 395

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF  +RR+EVI+++  +YG +R A   T    +A+ ALRDVG+ L +P      L   
Sbjct: 396  DVDFESERREEVIQWIYRRYGRDRAALCATTMRYRARGALRDVGKVLGLPADVTGLLS-- 453

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
              +  A      A  + +R     L +  +   L+++ +L G  R   TH  G V+    
Sbjct: 454  -THLGALSFDEDAFHERARELGLNLRNRRLLLTLQLAGELIGFPRQLGTHPGGFVLTRDR 512

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
            L  LVP+      D  +  ++   I+    +K D LGL  L  ++++ D L      ++ 
Sbjct: 513  LDDLVPIQPAAMDDRQIIVWDKDDIDTLRFMKVDVLGLGMLGCMRRAFDMLEDHYGKRLT 572

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            LS IP  D +TY +++   T+G FQ+ES      L  M+P    D++  V++ RPGPI  
Sbjct: 573  LSGIPPGDADTYAMISRADTIGTFQIESRAQMAMLPRMKPREFYDLVIQVAIVRPGPIQG 632

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D +  Y  R+  +  +    P +  +L +T GV ++QEQ MQIA   +G++  EAD LRR
Sbjct: 633  DMVHPYLQRRADRSLVDYPSPELRDILHKTLGVPLFQEQAMQIAIRCAGFTPGEADALRR 692

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AMG  +    +   ++R I G       +  A  IF  L  F  YGF +SHAA++A+I+Y
Sbjct: 693  AMGTFRGHGTVTYFRDRLIDGMMARHYPRDFAERIFRQLEGFGSYGFPESHAASFALIAY 752

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN- 833
             ++WMK HYP  F AA +  +     +  +  +DAR   + + P  VN    D  +    
Sbjct: 753  ASSWMKCHYPDVFCAALLNSQPMGFYRPAQIVRDARNHGVTVHPVCVNASRWDCTLERAP 812

Query: 834  ----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                 +   L  +KG+  T A  ++ +    P+D +ED   R     L    LE L  A 
Sbjct: 813  GRSTAVRLGLRMVKGLSNTDAARLVASRMP-PYDGIEDVWRR---SGLGPDALECLAQAD 868

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A    G  R   L  +  + +    +                      + L   +     
Sbjct: 869  AFHALGRDRRAALWDIKGLAESPLPLFAAADRGLNRPL---PECVEPSVPLTAMTEGQEV 925

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
            V    +    G     HP+   +  LR  G+    +  A   G  + +  +V+ +Q+  T
Sbjct: 926  V---EDYHATGLTLRRHPVAFLRDGLRDRGMIACADLRALRDGRRVVVPGLVLMRQRPGT 982

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
             +G  + ++T  +         +
Sbjct: 983  AQG--VLFMTIEDETGMANLVLW 1003


>gi|282904273|ref|ZP_06312161.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus C160]
 gi|282595891|gb|EFC00855.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus C160]
          Length = 1065

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/1024 (31%), Positives = 517/1024 (50%), Gaps = 81/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L     G + L +L S + +         +
Sbjct: 63   GMTIYVTNGLNNIET-------------VVLAKDNYGLKDLYQLSSEIKM----NALEHV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L+      +I+             F N +      +  F                 
Sbjct: 106  SFELLKRFSNNMIII-------------FKNVADEHRDIVRVFDSH-------------- 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y + + V +     +  V   +  + +  D      L A+  +T +      +    
Sbjct: 139  EDTYLDHRSVLV---QGIKHVWIQDVCYQTRHDAGTISALAAIRDNTKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +    +E+  +    PE       IA++C+  L+ H  +LP++     +  +K      
Sbjct: 195  AHFLTENEIHQL-DVNPEYFTQADRIAQKCNAELKYHQSLLPQYQTPNDESAKKY----- 248

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                   L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N+
Sbjct: 249  -------LWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTND 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L  
Sbjct: 362  QYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDE 419

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +    
Sbjct: 420  AYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG 479

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IP DD + + 
Sbjct: 480  --LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPIDDQKVFE 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K
Sbjct: 538  LLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSK 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++
Sbjct: 598  VQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G  +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A 
Sbjct: 658  HFIEGTKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + 
Sbjct: 718  ILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSV 777

Query: 851  RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+E    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D + 
Sbjct: 778  KVIVEERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVL 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 +E++       +F       + K   E       ++  + E+  LGFY S HP+D
Sbjct: 838  DGDLNIEQD-----GFLF----DILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD 888

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              K  + K  +  ++          I +       +Q +T+ G  + +VT ++  +  + 
Sbjct: 889  --KKFVAKQYLTIFK-LSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDG 943

Query: 1030 NFFP 1033
              FP
Sbjct: 944  VIFP 947


>gi|296112095|ref|YP_003622477.1| DNA-directed DNA polymerase III, alpha chain [Leuconostoc kimchii
            IMSNU 11154]
 gi|295833627|gb|ADG41508.1| DNA-directed DNA polymerase III, alpha chain [Leuconostoc kimchii
            IMSNU 11154]
          Length = 1113

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/1030 (29%), Positives = 521/1030 (50%), Gaps = 51/1030 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQ+ S+YSLL+   ++  I+         A+A+TD N ++ A++F Q A   GI+P+
Sbjct: 2    YAPLQILSAYSLLKNPNTIEQIIQVAKERHYEAVALTDINVMYGAVDFYQTARKYGIKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
                        L +   G     T   ++L+     GYQ L+ + S          ++ 
Sbjct: 62   F----------GLTLLINGLVNTATTFPVLLIAENQAGYQNLMWISSAKMTSKSSDMTLT 111

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L  I     ++L+      + +          +       K+  + +Y+ +  + 
Sbjct: 112  IIADHLDGIN----VILS--QDSELAQFIAAEYDDATDYWQDLTTKIKPENVYLGI--NP 163

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVT 249
                  +S++V  +  ++  L+A ++  +L+ +D     VL A+ A++ +   K   +  
Sbjct: 164  SLAPQIQSRLVNFSLANQARLIALDDIDYLNPDDAFTTQVLKAIDANAQLDGVKVLSQQL 223

Query: 250  PDHYLKNRSEMVSIF---SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              H L++ +++ + +     L  A ++  ++  +    +             E  + ++ 
Sbjct: 224  GTHTLEDLNQVKAAYLTTDALKMAYQHNEQLVSKSHVDIMFKQTAS--LPSFELPNSEQT 281

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+  +  GL  RL      +      Y +RL  EL VI  + F+ YFLIV D + +
Sbjct: 282  SGEYLQFISEKGLSNRLK----GRKLPEDHYSKRLKHELQVINHLGFNDYFLIVWDIVNF 337

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A + NI +G GRGS AGS+ AYAL ITD+DPL+F LLFERFLNPDR+ MPD DID+  ++
Sbjct: 338  AHQKNIQMGAGRGSAAGSLVAYALGITDVDPLQFGLLFERFLNPDRVQMPDIDIDWPDNK 397

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAH 485
            R+ ++ Y+ +KYG    AQIITFG+L AK ALRD  R   +  + + R+ + IP      
Sbjct: 398  REAILTYLHDKYGQRNFAQIITFGTLAAKQALRDTARVFGVSQAMMSRISRAIPQPKQGR 457

Query: 486  PVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             VS+Q A+      +       + D LL+++Q++EGL R+ STHAAG+V+    L + +P
Sbjct: 458  KVSIQDALESSDNLKNTLSTIENGDLLLKVAQQIEGLPRNYSTHAAGVVLSADVLVKTLP 517

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603
            +      D  +TQF    +E  GL+K D LGL  L++L ++L           ++S +P 
Sbjct: 518  VQSGT-DDRLLTQFEKNPVEALGLLKIDVLGLSNLSILAQTLYVAKANLPEYFNISDVPL 576

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +T  L     T GIFQ ES G++  L  ++P   E I+A+ +LYRPGP  NI  +  
Sbjct: 577  DDEKTLDLYAAGDTDGIFQFESPGIKNVLRQLKPATFEHIVAVNALYRPGPSRNIETFIK 636

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++G E +  +   +  +L  T G+I+YQEQVM +A+  +G++L EAD+LR AM KK  E
Sbjct: 637  RRHGLENVTMLDASLKTILAPTFGIIVYQEQVMLVAEAYAGFTLGEADILRSAMSKKKLE 696

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M    ++F++GA   G     A  IF  + +FA+YGFN+SHA AY+ +S++ A+MK HY
Sbjct: 697  KMTAMHKQFVTGAVSLGHDAKQAEQIFAYIDEFANYGFNRSHAVAYSKLSFELAYMKAHY 756

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PV F  A +   + + +K++++   A+   I + PPS+N     +   +  +   L  I+
Sbjct: 757  PVAFFTAVLNANLGSPDKVRRYVTAAKSRGITVKPPSINRSQRFWTSDNQTLQMGLNNIR 816

Query: 844  GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GV T     ++E    +  F S + F  R+  K     +L  LV+AGALD FGY+R +L+
Sbjct: 817  GVRTDFVTTLLEERQNNGEFQSFQSFVRRLPDKFRKHDILIQLVYAGALDAFGYNRAELI 876

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             +LD++ + A              F        ++  ++K +  +S+ +  +E+ V+G  
Sbjct: 877  SALDDLIEAAS-------------FGD---LILNETKIKKVAEFSSTEKLAHEKDVIGVN 920

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             SGHPLD Y  ++     +   +   T +   I + A+V + ++ +T+KG  + ++T S+
Sbjct: 921  LSGHPLDSYLEMITTQHFQQIVDF--TQKNQMITVIALVDNIRKTRTKKGEEMAFITVSD 978

Query: 1023 PAKEYEANFF 1032
                     F
Sbjct: 979  MTGSISVTIF 988


>gi|120553905|ref|YP_958256.1| DNA polymerase III, alpha subunit [Marinobacter aquaeolei VT8]
 gi|120323754|gb|ABM18069.1| DNA polymerase III, alpha subunit [Marinobacter aquaeolei VT8]
          Length = 1039

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/1034 (26%), Positives = 452/1034 (43%), Gaps = 64/1034 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L   S+++ L GA   + + ++ A     AIAITD  ++            + ++ 
Sbjct: 4    DYAELFCFSNFTFLTGASHPHELAEQAAELGYRAIAITDACSVAGIPRAWAALKDSPVKL 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G          L  T +G T     P  +LL  T EGY +L +L++      + K   
Sbjct: 64   ITGSWF------ELSDTPEGAT---APPRFILLARTREGYGQLCQLITTGRRRAE-KGQY 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    ++    +  + L       +       ++  A       +++F  RL +   R 
Sbjct: 114  RLFTRDIETHSLDHCLCL------WLPPLVSQTNAHQALITGEWLQRIFEHRLRLAATRT 167

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +  +  +V  LA      +VAT        E     DVL A+ H T + Q      
Sbjct: 168  LEAGEEQQLVRVRWLAEQMRCAVVATGQVHMHRRERQPLQDVLTALRHHTTLEQAGHCLF 227

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YL+    +  +F +    +  TV IA  CSF         P  +  E +      
Sbjct: 228  QNAERYLRPIPVIRRLFPE--PWVRETVAIAEACSFEPGSLRYEYPPDLVPEHE----TP 281

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + L      G   R   G   K       +  +  EL +IA +++  YFL + D + +A
Sbjct: 282  TSFLARLTREGERRRYPSGTPMK------VQALIRKELELIAELRYEHYFLTIHDIVDFA 335

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I +  GRGS A S   Y L IT+++P    LLFERF++ DR   PD D+DF  +RR
Sbjct: 336  RRQGI-LCQGRGSAANSAVCYCLGITEVNPANVELLFERFISKDRDEPPDIDVDFEHERR 394

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  +YG ER A   T    + ++A+RDVG+AL    + V++L   I        
Sbjct: 395  EEVIQYIYQRYGRERAALAATVIRYRPRSAIRDVGKALGFDATLVEKLLDGIDWRDKTTG 454

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              Q I D    R   +AD    +   +   L G  RH S H  G VI   PLS+LVP+  
Sbjct: 455  WRQQILDKGLTRSPNVAD----QFFTLVNTLLGFPRHLSQHVGGFVISAGPLSELVPVEN 510

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDH 606
                   V Q++   +E  GL+K D L L  LT ++K+L  +  ++G    +  +P +D 
Sbjct: 511  AAMEGRTVIQWDKDDLESLGLMKVDVLALGMLTAIRKALALISEEKGTTFTIQDVPQEDP 570

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNR 664
            +TY +L    ++G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  Y  R
Sbjct: 571  DTYAMLQKGDSIGVFQVESRAQINMLPRLKPETWYDLVIEVAIVRPGPIQGDMVHPYLRR 630

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKE 723
            K+G E +   +  +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM   K   
Sbjct: 631  KHGMEAVEYPNDAVRQVLERTLGVPIFQEQVIKLAMVAAGFSAGEADKLRRAMAAWKSHG 690

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            ++   +++ I G  + G     A  +++ +  F  YGF +SHAA++A++ Y +AW+K H+
Sbjct: 691  DLTPFRDKLIQGMLERGHDADFAERLYKQICGFGGYGFPESHAASFALLVYVSAWIKRHH 750

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLAA 841
            P  F  A +  +        +  QDAR+ N+ ++PP VN       +   +  +   L  
Sbjct: 751  PAAFYCALLNSQPMGFYSPSQLVQDARRHNVTVLPPDVNHSQWQHTLQGPEQHLRLGLRI 810

Query: 842  IKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            I+G+    A     A  ++P   + S  +  +R     LN+  +E L  A A+  F  +R
Sbjct: 811  IQGLPRNGAER---AHQNRPANGYQSAAELRTRA---GLNQSDMELLAGANAMPGFTSNR 864

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             Q    L   ++ A+            +FA+E  T                     +   
Sbjct: 865  HQAYWQLLEHEEPAE------------LFANEAMTEYTPEPCHLLPEPTEGQNVLADYSS 912

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             G     HPL + +           ++  AT  G  +++A +V  +Q+  T  G  + +V
Sbjct: 913  QGLTLQRHPLALLREQGHLRHCLTADQLKATRPGIPVQVAGLVTGRQRPGTASG--VTFV 970

Query: 1019 TFSEPAKEYEANFF 1032
            T  +         +
Sbjct: 971  TLEDETGNVNVVVW 984


>gi|300789271|ref|YP_003769562.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32]
 gi|299798785|gb|ADJ49160.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32]
          Length = 1109

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/1041 (27%), Positives = 454/1041 (43%), Gaps = 68/1041 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L VHS++S L+GA     ++++ A  +  A+ +TD + ++ A+ F+  A   G++ 
Sbjct: 64   PYAELHVHSNFSFLDGASHPETLVEEAARLELDALVLTDHDGMYGAVRFNDAARELGVRV 123

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
              G +L + +        Q   P P    ++++     GY RL  ++SR  L    K   
Sbjct: 124  GFGAELSLGLP-----APQAGAPDPAGSHLLVIARQQTGYHRLCRVISRAQLAGGEKGRP 178

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
                  L E     +++LTG   G + RA        A   L      F    + V L  
Sbjct: 179  VYDFDELAEELAGHVVVLTGCRKGAVRRALAERGPAAARAELARLVDRFGRSHVAVELID 238

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRP 246
            HR   D      +  LA    LP V + N  +   ED    D + AV         +   
Sbjct: 239  HRLPRDDAANDLLAALAKDLRLPTVVSGNVHYARPEDAVVADAVAAVRARRSAEDLEGWR 298

Query: 247  RVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              +   +L++  E    F    P A+     +    +F L + AP LP F      D   
Sbjct: 299  PPSGQAFLRSGMEQRRRFERRYPGAVGRAAVLGVEVAFDLNLVAPDLPPFPVPAGHD--- 355

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E + L      G   R       +  H + Y  +LD EL VI ++ F GYFL+V D ++
Sbjct: 356  -EMSFLIELTRQGAAKRYG----PRDEHPKAY-AQLDHELAVIEKLGFPGYFLVVWDIVR 409

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            + ++  I +  GRGS A S   YAL I   DP++++LLFERFL P+R   PD D+D    
Sbjct: 410  FCREAGI-LCQGRGSAANSAVCYALEICHADPVKWNLLFERFLAPERDGPPDIDVDIESG 468

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+E I+YV  K+G    AQ+    + +A +A+RD  +AL     Q D   KL+      
Sbjct: 469  RREEAIQYVYEKHGRFHAAQVANVITYRAPSAIRDAAKALGHSPGQQDAYGKLVDRWGGV 528

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              + Q           +      D +L+++ ++E   RH   H+ G+V+  +P+S++VP+
Sbjct: 529  AATKQ-----------QATGAIPDDVLDLAARIEDFPRHLGIHSGGMVLSKQPVSEVVPV 577

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                  D  V Q++       GL+KFD LGL  L+ L   +D +A+     VD+  +   
Sbjct: 578  EWATMKDRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHHMIDLVAEHHGSTVDIGKLDLA 637

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYN 662
            D   Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI       Y 
Sbjct: 638  DPAVYDMLCAADAVGVFQVESRAQLATLPRLRPRKFYDLVVEVALIRPGPIQGGSVHPYI 697

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKI 721
             R+ G E+    HPL+   L  T GV ++QEQVMQ+A  ++ ++ +EAD LRRAM  K+ 
Sbjct: 698  RRRRGDEEWEHAHPLLAASLDRTLGVPLFQEQVMQMAVDVASFTAAEADQLRRAMGAKRS 757

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              +M     RF +G + NG+ + +A  IFE +  F+ YGF ++H+ ++A++ Y +AW K 
Sbjct: 758  SAKMRALMARFFAGCAANGLDRELATRIFEQIHAFSGYGFPEAHSMSFALLVYASAWFKR 817

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI------ 835
            +YP  F A  +  +       +    DAR+  + I  P +N       + ++        
Sbjct: 818  YYPAAFCAGLLRAQPMGFYSPQSLVADARRHGVHIREPDINASLAGATLEEDAGSTGGVA 877

Query: 836  -YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
                LAA++ +G   A  I+    A  P+  + D  SRV  KK    V E+L  AGA   
Sbjct: 878  LRLGLAAVRHLGDDVADLIVAERDAHGPYTDIGDLTSRVPLKKN---VAEALATAGAFSS 934

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG  R Q L                   +  ++     G   D   L   +      R E
Sbjct: 935  FGGDRRQDLW----------AAGAAAATRPGHLPGLAPGL--DAPALPGMT------RLE 976

Query: 954  ---NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +    G    GHP++  + +L + G     E + T  G  + +   V  +Q+  T 
Sbjct: 977  VTAADLWATGVSPDGHPVEYLRELLDRRGAITVAELMRTEDGTRVWVGGAVTHRQRPATA 1036

Query: 1011 KGSRIGWVTFSEPAKEYEANF 1031
             G  I ++   +         
Sbjct: 1037 GG--ITFLNLEDETGMANVLV 1055


>gi|159046536|ref|YP_001542206.1| DNA polymerase III, alpha subunit [Dinoroseobacter shibae DFL 12]
 gi|157914295|gb|ABV95725.1| DNA polymerase III, alpha subunit [Dinoroseobacter shibae DFL 12]
          Length = 1116

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/1073 (24%), Positives = 446/1073 (41%), Gaps = 100/1073 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA----- 64
             +  L V S+++ L GA     ++ + A     AIAITD N++   +             
Sbjct: 3    GYAELCVTSNFTFLTGASHPEELVTRAAELGLKAIAITDRNSVAGVVRAFSALKELARLR 62

Query: 65   ---------AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS----------- 104
                     A   P++  +   D      M +      P +P  ++L             
Sbjct: 63   EEARAASDGAEAGPVVRSRQVTDHSSRQTMQHMPAGDAPRIPPDMVLPKLIPGARIVLTD 122

Query: 105  ----------TAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG-TEGLIMLTGGSSG 153
                          + RL  L+S        K    +    L + G    LI L      
Sbjct: 123  SPVDWLALPADIAAWSRLTRLLSLGKRR-ATKGECHLTRKDLLDWGEGMVLIALPPDPME 181

Query: 154  PIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLV 212
               RA   +        L    ++F  + ++     + G D  R  Q+ ++A    LPLV
Sbjct: 182  HPARASLSD--------LRHMLRIFPGQCFLGAAPRYDGRDPTRLDQLARIAQDTGLPLV 233

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVS-QKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            A    +          DVL  +     +    +R     +H LK+ +EM  +F   P A+
Sbjct: 234  ALGEVMMHRSSRRPLADVLTCLREGCTIDTIGERRLTNGEHRLKSPAEMARMFHRYPAAI 293

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
              T+EIA RC+F L       P           +  +  L   +  GL  R  +G  A+ 
Sbjct: 294  RRTLEIADRCAFRLDDLRYQYPDEARD-----GEPAQARLERLSREGLHWRYPEGPPAR- 347

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
                    R+D EL +I  M ++ YFL V D + +A+   I +  GRGS A SV  Y L 
Sbjct: 348  -----IVTRVDKELKLIGEMGYAPYFLTVHDIVAFARSKGI-LCQGRGSAANSVVCYLLG 401

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            +T++ P   +L+FERF++ +R   PD D+DF  +RR+EVI+++  +YG  R     T   
Sbjct: 402  VTEVPPESITLIFERFISKERGEPPDIDVDFEHERREEVIQWIYEQYGRHRAGLTATVIH 461

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVD 509
             +++AA+R+VG+ + +    V RL   I    +      +   + R R+A +  AD  V 
Sbjct: 462  FRSRAAIREVGKVMGLSQDVVARLSGQIWGWSS------SAPGEDRMRDAGIDPADGRVA 515

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
               ++  ++ G  RH S H  G VI    L +L P+      D  V +++   I+  GL+
Sbjct: 516  LAAKLIGEIIGFPRHLSQHVGGFVITHGRLDELCPIENAAMEDRTVIEWDKDDIDALGLL 575

Query: 570  KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K D L L  LT ++K+   L   R +++ L+ +P +D   Y +L     +G+FQ+ES   
Sbjct: 576  KVDVLALGMLTCIRKAFGLLDDHRHLQLTLANVPPEDPVVYDMLCKADAVGVFQVESRAQ 635

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQ 686
               L  MQP    D++  V++ RPGPI   +   + NR+ GKEK+  + P +  +L  T 
Sbjct: 636  LNFLPRMQPRKFYDLVCEVAIVRPGPIQGGMVHPFINRRQGKEKVEDLGPAMMEVLGRTY 695

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTI 745
            GV ++QEQ MQIA + +G+S +EAD LRR++   K    +   +ERFISG          
Sbjct: 696  GVPLFQEQAMQIAVVAAGFSAAEADRLRRSLATFKRMGTIGAFRERFISGMLARSYEAGF 755

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A   F  +  F  YGF +SHAA++A + Y +AW+K H+P  F  A +  +        + 
Sbjct: 756  AERCFAQIEGFGSYGFPESHAASFARLVYISAWLKRHHPAVFTCALLNSQPMGFYAPAQL 815

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADK 860
             +DAR+  ++I   SVN    D  +     G   +      IKG+    A  I  A  + 
Sbjct: 816  VRDAREHGVEIRAISVNHSAWDCTLEPRGDGALALRLGFRQIKGMREEDANWIEAARGNG 875

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             +  +E    R   +      LE L    A    G +R   L +   +          R 
Sbjct: 876  -YPDVEGLWRRAGVR---PDALERLAEGDAFASLGLNRRDALWAARAL----------RG 921

Query: 921  NKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                 +F  + +G    ++ L   ++    +    +   L      HP+++ +P L +  
Sbjct: 922  PNPLPLFGADGEGGAEPEVALPAMTLGQEVI---EDYLALRLSLRAHPMELLRPRLPE-- 976

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                           + +  +V+++Q+  T  G  + ++T  +         +
Sbjct: 977  --SLPHERLDRATGRVTVTGLVITRQRPGTASG--VIFLTLEDETGVSNVVVW 1025


>gi|257425817|ref|ZP_05602241.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            55/2053]
 gi|257428483|ref|ZP_05604881.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            65-1322]
 gi|257431117|ref|ZP_05607494.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            68-397]
 gi|257433799|ref|ZP_05610157.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            E1410]
 gi|257436716|ref|ZP_05612760.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            M876]
 gi|282914498|ref|ZP_06322284.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus M899]
 gi|282924844|ref|ZP_06332510.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            C101]
 gi|293503576|ref|ZP_06667423.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            58-424]
 gi|293510591|ref|ZP_06669296.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            M809]
 gi|293537133|ref|ZP_06671813.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus M1015]
 gi|257271511|gb|EEV03657.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            55/2053]
 gi|257275324|gb|EEV06811.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            65-1322]
 gi|257278065|gb|EEV08713.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            68-397]
 gi|257281892|gb|EEV12029.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            E1410]
 gi|257284067|gb|EEV14190.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            M876]
 gi|282313210|gb|EFB43606.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            C101]
 gi|282321679|gb|EFB52004.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus M899]
 gi|290919978|gb|EFD97046.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus M1015]
 gi|291095242|gb|EFE25507.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            58-424]
 gi|291466482|gb|EFF09003.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            M809]
          Length = 1065

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/1024 (31%), Positives = 518/1024 (50%), Gaps = 81/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L     G + L +L S + +         +
Sbjct: 63   GMTIYVTNGLNNIET-------------VVLAKDNYGLKDLYQLSSEIKM----NALEHV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L+      +I+             F N +      +  F                 
Sbjct: 106  SFELLKRFSNNMIII-------------FKNVADEHRDIVRVFDSH-------------- 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y + + V +     +  V   +  + +  D +    L A+  +T +      +    
Sbjct: 139  EDTYLDHRSVLV---QGIKHVWIQDVCYQTRHDADTISALAAIRDNTKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +    +E+  +    PE       IA++C+  L+ H  +LP++     +  +K      
Sbjct: 195  AHFLTENEIHQL-DVNPEYFTQADRIAQKCNAELKYHQSLLPQYQTPNDESAKKY----- 248

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                   L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N+
Sbjct: 249  -------LWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTND 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF    R++VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTHREKVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L  
Sbjct: 362  QYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDE 419

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +    
Sbjct: 420  AYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG 479

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + 
Sbjct: 480  --LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFE 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K
Sbjct: 538  LLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSK 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++
Sbjct: 598  VQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G  +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A 
Sbjct: 658  HFIEGTKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + 
Sbjct: 718  ILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSV 777

Query: 851  RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+E    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D + 
Sbjct: 778  KVIVEERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVL 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 +E++       +F       + K   E       ++  + E+  LGFY S HP+D
Sbjct: 838  DGDLNIEQD-----GFLF----DILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD 888

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              K  + K  +  ++          I +       +Q +T+ G  + +VT ++  +  + 
Sbjct: 889  --KKFVAKQYLTIFK-LSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDG 943

Query: 1030 NFFP 1033
              FP
Sbjct: 944  VIFP 947


>gi|218288798|ref|ZP_03493061.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241156|gb|EED08332.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 992

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/939 (38%), Positives = 539/939 (57%), Gaps = 42/939 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FVHL VH+++S  E  L + +I+    A + PA+AITDTN ++ AL F + A A GI P
Sbjct: 2   DFVHLHVHTAFSFRESLLRVGDIIRAAKACEMPAVAITDTNAMYGALSFYRLARAEGIAP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIG Q+ +   +   +  +      T   +V+L    +GY+RL  L +R       +   
Sbjct: 62  IIGMQVSLACDEEDAVPGRAAESLDT---VVVLAMGIDGYRRLTRLATRARWK---RPVP 115

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-KLFGDRLYVNLQR 188
            + L  L E     L++L GG    +        ++ AE+RLL     +   +L+V +Q 
Sbjct: 116 HVTLRELAESSDR-LVVLCGGPESRLFDFLARGEAEAAERRLLQVAGAVPAGQLFVEVQD 174

Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H    +R     ++QLA   ++PLVAT++  +L+ ED   H     +A     +      
Sbjct: 175 HGLRREREGLPGLIQLAKRWDVPLVATHDVRYLAREDASWHRAYAQLA----RADAAERF 230

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            T + +   ++EM   F++LP+AL  T EIA  C+  L +H   +PR+  K+     +  
Sbjct: 231 ATDEFHFATKAEMADRFANLPDALRRTAEIAEMCALDLPLHQVRMPRYATKDG----RPA 286

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
           +  LR  A AG   R    +       +          +VI RM ++ YFL+VADFI+ A
Sbjct: 287 DEVLREAARAGAARRYGALSPEVEERLEREL-------DVICRMGYADYFLVVADFIRHA 339

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  I  GPGRGS AGS+ AYAL ITD+DP+R  LLFERFLNP R+S+PD D DF  +RR
Sbjct: 340 HQQGISTGPGRGSAAGSLVAYALRITDVDPIRHKLLFERFLNPARVSLPDIDTDFEFERR 399

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            EVIRYV  KYG +RVAQI TFG+LQA+AALRD GR      + VDRL KL+P    H  
Sbjct: 400 GEVIRYVIEKYGRDRVAQIGTFGTLQARAALRDAGRMTGADPALVDRLAKLVPG-VVHAS 458

Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              A  + + FRE     P   RL E ++++E L  H S HAAG++I   P++  +P+  
Sbjct: 459 LDGAYQESAAFRELVDGSPDARRLFEAAKRIEDLPHHTSIHAAGVIISPEPIADWIPLDL 518

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
               D PVT + M+ +E  G +K DFLGLKTLTL+ + LD + +R  V +D   +   D 
Sbjct: 519 AA-DDTPVTAYPMEDVEALGFVKMDFLGLKTLTLIDRCLDSIRKRTGVSIDWRQVNEGDP 577

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            TY LLT   T G+FQLES+GMR+ L  ++P  ++D+IA++SL RPGP++NI  + + K+
Sbjct: 578 ATYALLTRADTNGVFQLESAGMRRVLRELRPTSLDDVIAVISLNRPGPMENIPAFCDAKH 637

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
           G+  +   HP ++P+L +T GVI+YQEQ+MQIA  ++G+SL+EAD+LRRA+ KK +E +D
Sbjct: 638 GRRPVTYPHPDLEPILADTYGVIVYQEQIMQIASQMAGFSLAEADLLRRAVSKKKREILD 697

Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
           +++ RF+ G  + G S+  A  ++EL+ +FADYGFN+SHAAAYAV++++TA+++ H+  +
Sbjct: 698 EERSRFVDGCVRRGYSEETAREVYELIVRFADYGFNRSHAAAYAVLAFRTAYLRAHFLPD 757

Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGV 845
           FLAA +TL M   +KI+ + QDAR+  I + PPSV      + V ++      L +I+ V
Sbjct: 758 FLAALLTLSMGAPDKIRLYEQDARRHGIAVRPPSVLRSERGYTVEEDGSLRAGLISIRNV 817

Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS------RM 899
           G     HI+   ++KPF SL DF  R++ + +NR+ L+SL  AGALD F         R 
Sbjct: 818 GEAAVDHILSLRSEKPFASLVDFLRRIEPRIVNRKALDSLFAAGALDEFFPENASRDVRR 877

Query: 900 QLL-QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
           Q+  ++L   ++  QW          ++F   +   + +
Sbjct: 878 QMYEEALLRAEESRQWAA-------LDLFVEAEAKSASE 909


>gi|282919466|ref|ZP_06327201.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            C427]
 gi|282317276|gb|EFB47650.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            C427]
          Length = 1065

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1024 (31%), Positives = 519/1024 (50%), Gaps = 81/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L     G + L +L S + +         +
Sbjct: 63   GMTIYVTNGLNNIET-------------VVLAKDNYGLKDLYQLSSEIKM----NALEHV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L+      +I+             F N +      +  F                 
Sbjct: 106  SFELLKRFSNNMIII-------------FKNVADEHRDIVRVFDSH-------------- 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y + + V +     +  V   +  + +  D +    L A+  +T +      +    
Sbjct: 139  EDTYLDHRSVLV---QGIKHVWIQDVCYQTRHDADTISALAAIRDNTKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +    +E+  +    PE       IA++C+  L+ H  +LP++     +  +K      
Sbjct: 195  AHFLTENEIHQL-DVNPEYFTQADRIAQKCNAELKYHQSLLPQYQTPNDESAKKY----- 248

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                   L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N+
Sbjct: 249  -------LWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTND 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L  
Sbjct: 362  QYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDE 419

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +    
Sbjct: 420  AYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG 479

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + 
Sbjct: 480  --LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFE 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K
Sbjct: 538  LLSQGDTTGIFQLESDGVRSVLKKLKPEHYEDIVAVTSLYRPGPMEEIPTYITRRHDPSK 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++
Sbjct: 598  VQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G  +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A 
Sbjct: 658  HFIEGTKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + 
Sbjct: 718  ILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSV 777

Query: 851  RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+E    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D + 
Sbjct: 778  KVIVEERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVL 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 +E++       +F       + K   E       ++  + E+  LGFY S HP+D
Sbjct: 838  DGDLNIEQD-----GFLF----DILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD 888

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              K  + K  +  ++          I +       +Q +T+ G  + +VT ++  +  + 
Sbjct: 889  --KKFVAKQYLTIFK-LSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDG 943

Query: 1030 NFFP 1033
              FP
Sbjct: 944  VIFP 947


>gi|57650573|ref|YP_186586.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus COL]
 gi|87161888|ref|YP_494343.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus USA300_FPR3757]
 gi|151221809|ref|YP_001332631.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus str. Newman]
 gi|161509916|ref|YP_001575575.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus USA300_TCH1516]
 gi|221142338|ref|ZP_03566831.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus str. JKD6009]
 gi|258450902|ref|ZP_05698955.1| DNA polymerase III subunit alpha [Staphylococcus aureus A5948]
 gi|262049018|ref|ZP_06021896.1| DNA polymerase III, alpha chain [Staphylococcus aureus D30]
 gi|262051793|ref|ZP_06024010.1| DNA polymerase III, alpha chain [Staphylococcus aureus 930918-3]
 gi|282924393|ref|ZP_06332066.1| DNA polymerase III subunit alpha [Staphylococcus aureus A9765]
 gi|284024750|ref|ZP_06379148.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus 132]
 gi|294849863|ref|ZP_06790602.1| DNA polymerase III subunit alpha [Staphylococcus aureus A9754]
 gi|304380705|ref|ZP_07363376.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus ATCC BAA-39]
 gi|81859569|sp|Q5HF71|DPO3A_STAAC RecName: Full=DNA polymerase III subunit alpha
 gi|57284759|gb|AAW36853.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus COL]
 gi|87127862|gb|ABD22376.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus USA300_FPR3757]
 gi|150374609|dbj|BAF67869.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus str. Newman]
 gi|160368725|gb|ABX29696.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus USA300_TCH1516]
 gi|257861438|gb|EEV84246.1| DNA polymerase III subunit alpha [Staphylococcus aureus A5948]
 gi|259160287|gb|EEW45314.1| DNA polymerase III, alpha chain [Staphylococcus aureus 930918-3]
 gi|259162835|gb|EEW47399.1| DNA polymerase III, alpha chain [Staphylococcus aureus D30]
 gi|269941182|emb|CBI49570.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            TW20]
 gi|282592894|gb|EFB97897.1| DNA polymerase III subunit alpha [Staphylococcus aureus A9765]
 gi|294823202|gb|EFG39632.1| DNA polymerase III subunit alpha [Staphylococcus aureus A9754]
 gi|302751529|gb|ADL65706.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus str. JKD6008]
 gi|304340812|gb|EFM06741.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus ATCC BAA-39]
 gi|315197169|gb|EFU27508.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus CGS01]
 gi|320141645|gb|EFW33480.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus MRSA131]
 gi|320143799|gb|EFW35572.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus MRSA177]
 gi|329314376|gb|AEB88789.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            T0131]
          Length = 1065

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1031 (31%), Positives = 519/1031 (50%), Gaps = 95/1031 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L    +G + L +L S + +         +
Sbjct: 63   GMTIYVTNGLNTVET-------------VVLAKNNDGLKDLYQLSSEIKM----NALEHV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L+      +I+               +  +   +   T    + D L +++Q    
Sbjct: 106  SFELLKRFSNNMIII----------FKKVGDQHRDIVQVFETHNDTYMDHLSISIQ---- 151

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                                V   N  + + +D +    L A+  +T +      +    
Sbjct: 152  ----------------GRKHVWIQNVCYQTRQDADTISALAAIRDNTKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +     E+  +  D+  E L     IA++C   L+ H  +LP++     +  +K     
Sbjct: 195  AHFLTEKEINQL--DINQEYLTQVDVIAQKCDAELKYHQSLLPQYETPNDESAKKY---- 248

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                    L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N
Sbjct: 249  --------LWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTN 300

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ V
Sbjct: 301  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERV 360

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L 
Sbjct: 361  IQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLD 418

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +   
Sbjct: 419  EAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDT 478

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + +
Sbjct: 479  G--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVF 536

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   
Sbjct: 537  ELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPS 596

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ ++
Sbjct: 597  KVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESER 656

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A
Sbjct: 657  QHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYA 716

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  +
Sbjct: 717  NILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQS 776

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +
Sbjct: 777  VKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQV 836

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  +E++       +F       + K   E       ++  + E+  LGFY S HP+
Sbjct: 837  LDGDLNIEQD-----GFLF----DILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPV 887

Query: 969  D------VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            D       Y  I +    + Y+  +                 +Q +T+ G  + +VT ++
Sbjct: 888  DKKFVAKQYLTIFKLSNAQNYKPILVQFDK-----------VKQIRTKNGQNMAFVTLND 936

Query: 1023 PAKEYEANFFP 1033
              +  +   FP
Sbjct: 937  GIETLDGVIFP 947


>gi|289755502|ref|ZP_06514880.1| DNA polymerase III, alpha subunit [Mycobacterium tuberculosis
           EAS054]
 gi|289696089|gb|EFD63518.1| DNA polymerase III, alpha subunit [Mycobacterium tuberculosis
           EAS054]
          Length = 1005

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/981 (27%), Positives = 464/981 (47%), Gaps = 60/981 (6%)

Query: 3   QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           + +  S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A
Sbjct: 50  ERVGSSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAA 109

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               ++ + G       + +L  T + + P P  P +++L    EGY+RL   ++  +L 
Sbjct: 110 AELDVRTVFGA------ELSLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLA 163

Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-R 181
              K   R     L E       +LTG   G + +A        A++ L      F   R
Sbjct: 164 GGEKGKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSR 223

Query: 182 LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TV 239
           + + L  H    D  R + +  LA    + +VAT  + F           + A+    ++
Sbjct: 224 VSIELTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSL 283

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            S           +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +
Sbjct: 284 DSAAGWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPD 343

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                  E++ LR+  +AG   R      A   ++     +++ EL VIA+++F GYFL+
Sbjct: 344 G----HTEDSWLRSLVMAGARERYGPPKSAPRAYS-----QIEHELKVIAQLRFPGYFLV 394

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V D  ++ + N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D
Sbjct: 395 VHDITRFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDID 453

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           ID   D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K +
Sbjct: 454 IDIESDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQV 513

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            +                  +A   D   +++++++ ++  L RH   H+ G+VI DRP+
Sbjct: 514 SHWTG---------------QADDVDGIPEQVIDLATQIRNLPRHLGIHSGGMVICDRPI 558

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
           + + P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VDL
Sbjct: 559 ADVCPVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDL 618

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
           + +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   
Sbjct: 619 ARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGG 678

Query: 659 --VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
               Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRA
Sbjct: 679 SVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRA 738

Query: 717 M-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           M  K+  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + +
Sbjct: 739 MGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVF 798

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +AW K H+P  F AA +  +       +    DAR+  + +  P VN         +  
Sbjct: 799 YSAWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAG 858

Query: 835 I--YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
                 L A++ +G   A  ++    A+ PF SL D  SRV     +   +E+L  AGAL
Sbjct: 859 TEVRLGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRVQL---SVPQVEALATAGAL 915

Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            CFG SR           +         T + + +      +      +      +    
Sbjct: 916 GCFGMSRR----------EALWAAGAAATGRPDRLPGVGSSSH-----IPALPGMSELEL 960

Query: 952 FENEQRVLGFYFSGHPLDVYK 972
              +    G     +P    +
Sbjct: 961 AAADVWATGVSPDSYPTQFLR 981


>gi|315653496|ref|ZP_07906417.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus iners
            ATCC 55195]
 gi|315489187|gb|EFU78828.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus iners
            ATCC 55195]
          Length = 1040

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/1028 (31%), Positives = 523/1028 (50%), Gaps = 46/1028 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6    LQNISSFTLLKSPISIEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            Q          +   G         ++++     GYQ ++ L S + L  + GK+ + + 
Sbjct: 66   Q----------LRINGLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
            L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116  LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
                Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +       +  
Sbjct: 175  SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLQSIDDNQSIRDGYELTLKH 233

Query: 250  -PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +HYLK + ++   ++ L   EAL NT ++    +  ++   P LP+FI+ + D     
Sbjct: 234  VGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD----T 289

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L + A+ GL+ +       K      Y  RL +EL +I  M F+ YFLIV D I +
Sbjct: 290  SYEFLHHLAMTGLQAKF-----NKHDIPAKYLNRLKYELKIIDEMGFNDYFLIVWDVINY 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
                 I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   +R
Sbjct: 345  CHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPDNR 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       ++     IP   +  
Sbjct: 405  RNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQNAIPKSKSKI 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V + 
Sbjct: 465  TLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQ 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                  +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP DD 
Sbjct: 525  NGSL-GIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLDDP 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  RKN
Sbjct: 584  ATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +EK+V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   EM 
Sbjct: 644  REEKVVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSMEMK 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K    F++ A + G S   A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP +
Sbjct: 704  KIGVDFVNRAVQQGHSAVAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQ 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY-SLAAIKGV 845
            F  A +   + + +K+ K+  D +  NI+I  P +N    +F + D       L +I G+
Sbjct: 764  FYVALLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSIIGL 823

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                   IM     +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL S 
Sbjct: 824  RMDFVEQIMN--LQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLASY 881

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +++      +    +  +  +F   +    D        + +++ + E E  VLGF    
Sbjct: 882  EDLL-----ICIKMSGGNNVLFQALEPKELD------IKMPSNAQKEEWETSVLGFSPQI 930

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             P+   +   +K G K + +      G ++     ++  +   T+   ++ +  F++  +
Sbjct: 931  DPILAAQIYAKKYGFKPFSDFTFYDEGVSV---GKMMDIKVITTKNNKKMAFAKFNDLHE 987

Query: 1026 EYEANFFP 1033
              +   FP
Sbjct: 988  TVDFVIFP 995


>gi|239817499|ref|YP_002946409.1| DNA polymerase III, subunit alpha [Variovorax paradoxus S110]
 gi|239804076|gb|ACS21143.1| DNA polymerase III, alpha subunit [Variovorax paradoxus S110]
          Length = 1040

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/1036 (26%), Positives = 475/1036 (45%), Gaps = 68/1036 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L+  S++S L GA   + ++++       A+A+TD  +L   +     A    ++
Sbjct: 4    PDYAELRCVSNFSFLRGASQPDELVERAKQLGYAALALTDECSLAGVVRAHVAAKDHDLK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +IG Q  ++    L        P     ++ +L    +GY  L   ++++    + K +
Sbjct: 64   LLIGSQFLVEPDAELD-------PEAAPFTLTVLACDLDGYGNLSAFITKLRRSSE-KGT 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++ L+ ++     G ++L               +            + F  R +  +++
Sbjct: 116  YKLPLAQIRGAELAGCVVLASPR--------RMATPAQLGWLGAWLLREFLGRCWFAVEK 167

Query: 189  HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
             R  D      ++ +++   E+PLVA  +  F         DV+ A      ++      
Sbjct: 168  LRLLDDEMWLHRLGEVSAATEIPLVAAGDVHFHVRSRKPLQDVMTATRLGKPLTDCGLEL 227

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +   + +L+ R  +   ++  PE L  T+++A RCSF L+      P  +    +     
Sbjct: 228  QPNAERHLRTRLRLAQTYA--PELLAETLKVAARCSFNLEELRYQYPDEVVPAGE----T 281

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     G   R   G  AK       + +++ EL +IA +K+  YFL VAD + +
Sbjct: 282  PAGYLRRLTYEGGGRRWPDGIPAK------VQAQIEHELALIAELKYEHYFLTVADIVMF 335

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A SV  Y   +T++DP R S+LFERF++ +R   PD DIDF  +R
Sbjct: 336  ARARHI-LCQGRGSAANSVVCYCTGVTEVDPGRMSVLFERFISKERNEPPDIDIDFEHER 394

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++Y+  KYG +R A      S + K+A+RDVG+AL M    VD L K       H 
Sbjct: 395  REEVLQYLYAKYGRDRAAITGVVISYRPKSAIRDVGKALGMSLETVDALAK------GHQ 448

Query: 487  VSLQAIADDSRFREARLADP--SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                      R +E  LA     V +LL ++++L G  RH S H  G V+   PL ++VP
Sbjct: 449  WWDGGAVRPERLQELGLAADSLQVQQLLHLTEQLIGFPRHLSQHTGGFVLTKGPLCRMVP 508

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPF 603
            +      D  V +++   ++  GL+K D L L  LT ++K+LDF+  R      +  IP 
Sbjct: 509  IENASMPDRTVIEWDKDDLDALGLLKVDCLALGMLTAIRKALDFIGLRKGCVFGMQDIPA 568

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661
            +D  TY ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI   +   Y
Sbjct: 569  EDSATYDMICKADTIGVFQIESRAQMSMLPRLKPRCFYDLVIEVAIVRPGPIQGGMVHPY 628

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
             NR+ G+E +V     +   L  T GV ++QEQVMQI+ L +G++  EAD LRR+M   K
Sbjct: 629  LNRRQGREPVVYPSEALKEALGRTLGVPVFQEQVMQISILAAGFTPGEADGLRRSMAAWK 688

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K  ++    + + G +  G  ++ A  IFE +  F++YGF +SHAA++A++ Y + W+K
Sbjct: 689  RKGGLEHYHAKIVDGMTARGYEESFAKAIFEQIKGFSEYGFPESHAASFALLVYASCWIK 748

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----NRIY 836
             H+P EFLAA +  +        +  QDAR+  +++ P  V    VD  + D      + 
Sbjct: 749  CHHPAEFLAAMLNSQPLGFYSPSQLVQDARRHGVEVRPVDVMYSDVDCTLEDLAHEPAVR 808

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  I G+ + +A  I+EA   + FDS ED   R   +    ++L +     +    G+
Sbjct: 809  LGLRMIGGLKSASAGRIVEARVQQVFDSTEDLALRARLELHEMKLLAAADALAS--LSGH 866

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R Q+ ++     + A  + +      E+    +     ++I                + 
Sbjct: 867  RRQQVWEAAG--LRAAPGLLREVPVD-EDFLGLDAAPEGEEIV--------------FDY 909

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
               G     HPL + +  L   G+    +      G ++    +V  +QQ +T KG+   
Sbjct: 910  ASTGLTLRRHPLALLRERLALRGLMTARDLDEIENGEHVSHCGIVTLRQQPETAKGT--I 967

Query: 1017 WVTFSEPAKEYEANFF 1032
            +VT  +     +   +
Sbjct: 968  FVTLEDETGVVQVIVW 983


>gi|220925004|ref|YP_002500306.1| DNA polymerase III subunit alpha [Methylobacterium nodulans ORS 2060]
 gi|219949611|gb|ACL60003.1| DNA polymerase III, alpha subunit [Methylobacterium nodulans ORS
            2060]
          Length = 1072

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1045 (26%), Positives = 451/1045 (43%), Gaps = 83/1045 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQV + YS L GA S   +    A     A+ +TD +++   ++  + A A G + + 
Sbjct: 3    VELQVTTHYSFLRGASSPEELFTTAALLGLTALGVTDRHSVAGLVKAHEAARATGCRLVA 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+LD+   D                ++++  +    Y RL  L++       GK    +
Sbjct: 63   GCRLDLSGPD-------------QGTALLVYPTDRAAYGRLCRLLTLGK-ERAGKGGCTL 108

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA-EKRLLTFKKLFGDRLYVNLQRHR 190
                + E  +EGLI +              + S  A   RL   K +FG   +  L R  
Sbjct: 109  DFGDVAEW-SEGLIAVL-----------LTDKSDDALAARLGRLKGIFGRHSFCALTRRF 156

Query: 191  G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            G  D  R   +  LA    +P+VAT + L+   E     DV+  +   T +      R  
Sbjct: 157  GVNDHRRLEGIADLARAARVPIVATGDVLYHVPERRLMQDVVTCIRLGTTIEAAGFARER 216

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                +L+  +E   +F+  PEA+E    IA  C F L       P     E  +  +  +
Sbjct: 217  HAGRHLQPPAETARLFARHPEAVERAQAIAESCRFSLDDLTYTYP----DETGEDGRSAQ 272

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L    +AG   R   G        ++ R+++  EL++IA   ++ YFL V   +++A+
Sbjct: 273  ERLEAMTLAGAAQRFPGGI------PENVREQIRHELDLIASKTYAPYFLTVEAIVRFAR 326

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I +  GRGS A SV  + L IT IDP+R  LLFERF++ +R   PD D+DF  DRR+
Sbjct: 327  DQGI-LCQGRGSAANSVVCFCLGITAIDPVRLKLLFERFVSDNRDEPPDIDVDFEHDRRE 385

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI++V   YG  R A   T     A+ A+R+VG+ L +P      L +L+         
Sbjct: 386  EVIQWVYATYGRHRAALTATVIRYGARGAVREVGKVLGVPEDVTGALARLVSGWSRDG-- 443

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A   ++      L+D  +   L+I++ L G  RH   H  G V+    L +L P+   
Sbjct: 444  --AGEREAEALNLNLSDRRLRLTLDIAKALIGTPRHLGQHPGGFVLTLDRLDELCPITPA 501

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR----GVKVDLSLIPFD 604
               +    +++   IE    +K D LGL  L  L+++   L +         D++ IP +
Sbjct: 502  TMENRQTIEWDKDDIEALKFMKVDVLGLGMLGCLRRAFALLKEHRGDENPPQDIAGIPPE 561

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D  TY ++    TLG+FQ+ES      L  MQP  + D+   V+L RPGPI  D +  Y 
Sbjct: 562  DAATYAMIGKADTLGVFQIESRAQMAMLPRMQPKHLYDLTIEVALVRPGPIQGDMVHPYL 621

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+  +  +      +  +L+ T GV ++QEQ MQ+A + +G++ +EAD LRRAM   K 
Sbjct: 622  RRRQNRSLVHYPSEALKSVLERTLGVPLFQEQAMQVAIVAAGFTAAEADGLRRAMATFKA 681

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              ++   +++ I+G  +NG +   A   F  L  F  YGF +SHAA++A+++Y ++W+K 
Sbjct: 682  NGKIGLYRDKLIAGMIRNGYTPDFAARTFRQLEGFGSYGFPESHAASFALLAYASSWLKC 741

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRIY 836
            H+P  F  A +  +        +  +DAR+  + + P  VN    D  +         + 
Sbjct: 742  HHPDVFACALLNAQPMGFYAPAQIVRDARRHGVPVRPIDVNASRWDCTLEPAQGRLMALR 801

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  ++G+G      I        F S+ED   R     +  + LE L  A A    G 
Sbjct: 802  LGLRLVRGLGNAEGARIATVREADLFRSVEDLWRRA---AVPLKALEHLAAADAFRSLGL 858

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--------KGTFSDKITLEKFSVENS 948
             R + L ++           K        +FA                 + L       +
Sbjct: 859  GRREALWAI-----------KGLAPLPLPLFAAADAREAAIRPELDEPAVALAPMPEGAA 907

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             V    + R  G     HP+   +P L + GI           G  + +A +V+ +Q+  
Sbjct: 908  VV---ADYRASGLSLGRHPVAFLRPDLARDGISACAALKRLRDGARVTVAGLVLVRQKPG 964

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            + KG  + ++T  +  +      +P
Sbjct: 965  SAKG--VLFITIEDETEVANLVVWP 987


>gi|167621850|ref|YP_001676635.1| DNA polymerase III, alpha subunit [Caulobacter sp. K31]
 gi|167351591|gb|ABZ74321.1| DNA polymerase III, alpha subunit [Caulobacter sp. K31]
          Length = 1053

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/1035 (26%), Positives = 455/1035 (43%), Gaps = 71/1035 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +V LQ  S +SLL GA S   + D+       A+AI D N++   +     A A G++ 
Sbjct: 11   PYVELQCASHFSLLRGASSPGELFDEAQRLGYRALAICDRNSVAGVVRAHIAAKATGVRL 70

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC                +       ++V+L +    Y RL  L+S       GK   
Sbjct: 71   IIGC----------------ELVLRCGLTLVVLPTDRAAYGRLCRLLSLGKSR-AGKGQC 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
             + L  L     +GLI +    +             +   +L     +FG   ++ L  R
Sbjct: 114  DLGLEDLA-AHAQGLIAILVPDAPD----------DLCALQLKKVAAIFGVDAHLALTLR 162

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
             R  D  R  Q+  +A    +  V TN  LF  +      DV+  +   T +     +  
Sbjct: 163  RRPGDALRLHQLEAMARQAGVRPVVTNRVLFHEKGRRLLQDVVTCIREGTTIDDVGFKRD 222

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK  SE+  + +  P+A+  +VEIARRC F L   +   P     E  +  +  
Sbjct: 223  RHADRYLKAPSEIQRLLAKHPDAVTASVEIARRCRFSLDELSYQYPH----EVSEPGRTP 278

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L      G   R   G  A      +  + L  EL +I  + ++ YFL V   +Q+A
Sbjct: 279  QETLERLTWFGAAQRYPDGLPA------EVEKALAHELRLIGLLGYAPYFLTVNSIVQYA 332

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +I +  GRGS A S   Y L +T IDP R  LLFERF++ +R   PD D+DF  +RR
Sbjct: 333  RGQDI-LCQGRGSAANSAVCYVLGVTSIDPERNDLLFERFVSQERNEPPDIDVDFEHERR 391

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            + V++++   YG  R A +      + + A+RDVG+ L +P      L   I +     +
Sbjct: 392  ETVMQWIFETYGRHRCALVAVVQRFRPRGAVRDVGKVLGLPEDMTKALSSQIWSFSREDI 451

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                    +R     L+D  +   LE++Q L    RH S H  G V+ +  L +LVP+  
Sbjct: 452  E----ESHARDVGLDLSDRRLRLTLELAQLLLNTPRHFSQHPGGFVLTEDRLDELVPIEP 507

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDH 606
                D  + +++   I++   +K D L L  LT L++ LD L A + +  DL+ IP +D 
Sbjct: 508  ARMQDRQIIEWDKDDIDELKFMKVDVLALGMLTCLKRGLDLLAAHKDIHKDLATIPPEDP 567

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNR 664
             TY ++    TLG+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  R
Sbjct: 568  RTYAMIRKADTLGVFQIESRAQMVMLPRLKPRSFYDLVIEVAIVRPGPIQGDMVHPYLRR 627

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKE 723
            + GKEK+    P ++ +L +T GV ++QEQ M++A   +G++  EAD LRR+M   K+  
Sbjct: 628  REGKEKVSYPKPELEKVLGKTLGVPLFQEQAMRVAIECAGFTPGEADQLRRSMATFKMTG 687

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +   +++ + G    G  +  A   F  L  F  YGF +SHAA++A+++Y ++W+K H+
Sbjct: 688  GVSHFRQKLLGGMVARGYPQDFAEQTFSQLEGFGSYGFPESHAASFALLAYASSWLKCHH 747

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------RIYY 837
            P  F AA +  +     +  +  +DA +  +QI P  VN    D  +  +       +  
Sbjct: 748  PDVFCAALLNSQPMGFYQPAQIVRDAVEHGVQIRPICVNASRWDCTLEPDGDTGRLAVRL 807

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +  +KG+    A  ++ A  ++P+ S+++   R         VL  L  A A       
Sbjct: 808  GMRLVKGLADGDAAALVLARGEEPYRSIDEVWRR---SGAKPGVLGRLAEADAF------ 858

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
                L SL   ++ A W  K   +    +F     +  ++  +              +  
Sbjct: 859  ----LPSLGLARREAAWAIKALRDDALPLFDQPGASELNEPAV-ALKAMTEGREIVEDYS 913

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             +G     HPL + +  L ++      +      G  I+ A +V+ +Q   + KG  + +
Sbjct: 914  HVGLSLRRHPLALLRSDLTRLRRAPCRDVAQGRDGRFIQTAGLVLVRQMPGSAKG--VLF 971

Query: 1018 VTFSEPAKEYEANFF 1032
            +T  +         +
Sbjct: 972  MTLEDETGVANLVVW 986


>gi|312873990|ref|ZP_07734026.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 2052A-d]
 gi|311090539|gb|EFQ48947.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 2052A-d]
          Length = 1040

 Score =  781 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/1028 (31%), Positives = 523/1028 (50%), Gaps = 46/1028 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6    LQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            Q          +   G         ++++     GYQ ++ L S + L  + GK+ + + 
Sbjct: 66   Q----------LRINGLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
            L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116  LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLVKILPQSSNLYLGVFADK 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
                Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +       +  
Sbjct: 175  SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLKSIDDNQSIRDGYELTLKH 233

Query: 250  -PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +HYLK + ++   ++ L   EAL NT ++    +  ++   P LP+FI+ + D     
Sbjct: 234  VGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD----T 289

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L + A+ GL+ +       K      Y  RL +EL +I  M F+ YFLIV D I +
Sbjct: 290  SYEFLHHLAMTGLQAKF-----NKHDIPAKYLNRLKYELKIIDEMGFNDYFLIVWDVINY 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
                 I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   +R
Sbjct: 345  CHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPDNR 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       +D   K IP   +  
Sbjct: 405  RNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITIDSWLKAIPKSKSKI 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                A      F     A  S     E+++K+EGL RH S HAAG+VI D  +++ V + 
Sbjct: 465  TLSDAYKLSKDFWMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQ 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                  +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP DD 
Sbjct: 525  NGSL-GIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLDDP 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  RKN
Sbjct: 584  ATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +EK+V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   EM 
Sbjct: 644  KEEKVVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSMEMK 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K    F++ A + G S   A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP +
Sbjct: 704  KIGVDFVNRAVQQGHSAAAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQ 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY-SLAAIKGV 845
            F  A +   + + +K+ K+  D +  NI+I  P +N    +F + D       L +I G+
Sbjct: 764  FYVALLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSIIGL 823

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                   IM     +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL S 
Sbjct: 824  RMDFVEQIMN--LQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLASY 881

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +++      +    +  +  +F   +    D        + +++ + E E  VLGF    
Sbjct: 882  EDLL-----ICIKMSGGNNVLFQALEPKELD------IKMPSNAQKEEWETSVLGFSPQI 930

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             P+   +   +K G K + +      G ++     ++  +   T+   ++ +  F++  +
Sbjct: 931  DPILAAQIYAKKYGFKPFSDFTFYDEGVSV---GKMMDIKVITTKNNKKMAFAKFNDLHE 987

Query: 1026 EYEANFFP 1033
              +   FP
Sbjct: 988  TVDFVIFP 995


>gi|149926945|ref|ZP_01915204.1| DNA polymerase III, alpha subunit [Limnobacter sp. MED105]
 gi|149824497|gb|EDM83715.1| DNA polymerase III, alpha subunit [Limnobacter sp. MED105]
          Length = 1046

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/1044 (25%), Positives = 453/1044 (43%), Gaps = 65/1044 (6%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +   L+  P F      S++S L+ A     ++ +       AI ITD  +L   +   Q
Sbjct: 1    MNTSLQALPPFAETLALSNFSFLKSASHAEELVQQAKLLGYSAIGITDECSLAGIVRAHQ 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A   GIQ ++G Q                        I L+V    GY  L  L+++  
Sbjct: 61   VAKECGIQLLVGAQFVFARSSAF-----------AGQRIALIVKNKTGYTHLCRLITQAR 109

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 K         L +I     ++L                 +     L    K F  
Sbjct: 110  SR-ATKGDYLFTRDDLADIPPGLQLLLVPDERS----------KENFTALLSWCAKRFTG 158

Query: 181  RLYV--NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            RL+V  NLQ HRG+DR     +  LA+ H + L+A+N  +  S E    HDVL A+  + 
Sbjct: 159  RLHVVCNLQ-HRGFDRPWLLYLQALAHLHGVELMASNLPVMHSSERKNLHDVLTAIRLNC 217

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             ++             L+   ++   +      L+ TV +A +C F L       PR I 
Sbjct: 218  KLNDAKPFLETNAQRCLQPLQQLAQTYPH--RLLQQTVTLAAQCVFSLDELRYQYPREIS 275

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E      E    LR     G   R +    AK       +++++ EL +I  ++F  YF
Sbjct: 276  PEG----LEPTQYLRQLVEEGAAQRYSSNVPAK------VKKQIEHELQLIEELQFEAYF 325

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D +++A+  NI +  GRGS A SV  Y L IT+++P + ++LFERF++ +R   PD
Sbjct: 326  LTVYDIVRFARSRNI-LCQGRGSAANSVVCYCLHITEVNPDKMAVLFERFISRERNEPPD 384

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF   RR+EVI+Y+  KYG +R A   +    + ++ALRDVG+AL +    V++L K
Sbjct: 385  IDVDFEHTRREEVIQYIYQKYGRDRAALAASVVVYRPRSALRDVGKALGLDTDLVEQLAK 444

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                  +  +S+  +          +    V   + ++ +L G  RH S H  G VI   
Sbjct: 445  SQDGGYSRSMSVDHMIQ----AGIDVHQSGVQHCVHLADELLGFPRHLSQHTGGFVIARD 500

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKV 596
             L++LVP+      +  V Q++   ++  GL+K D L L  L+ ++ +LD L  +     
Sbjct: 501  SLTELVPVENASMPERSVIQWDKDDLDAMGLMKVDVLALGMLSAIRMTLDELHRKPDAPR 560

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             L  IP +D+ TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI 
Sbjct: 561  TLQAIPPEDNATYDMMCKADTVGVFQIESRAQMGMLPRLRPQQYYDLVIQVAIVRPGPIQ 620

Query: 657  NIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
              +   +  R+ G E +      +   L  T+GV I+QEQVMQ+A L +G+S  EAD LR
Sbjct: 621  GGMVHPFLKRRQGLEAVNYPSDALKEALGRTEGVPIFQEQVMQVAILAAGFSPGEADALR 680

Query: 715  RAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R M   K K  +    ER ++G  + G ++  A +IF+ +  F +YGF +SHAA++A++ 
Sbjct: 681  RGMAAWKRKGGLHHFYERVVNGMLERGYTREFAESIFKQMEGFGEYGFPESHAASFAMLV 740

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y +AW+K H+P  FL   +  +        +  QDA++  + ++P  V    ++ ++ + 
Sbjct: 741  YASAWLKCHHPDAFLCGLLNAQPMGFYAPSQLIQDAQRHGVTVLPVDVQCSSLETQLENC 800

Query: 834  R-----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  +   L  + G+    A  I++      F+S+ED   R    + +   L      
Sbjct: 801  TGDFLPVRLGLNRVNGLKHDAALRIVQTREKGLFESVEDLTKRARLDRGDLLALADANAL 860

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
               +     R Q +      +        N TN    + ++ +   +  + L K S    
Sbjct: 861  ---EKLAGHRRQAVWQTAATETSGIRHNANNTN----LLSNTRSNETP-LELPKASELED 912

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             +    + R  G     HP+   +  L    IK  EE      G   R   +V  +Q+  
Sbjct: 913  ML---ADYRATGSSLQHHPISFLRKQLAPYKIKQVEELRTYPNGRLARACGIVTHRQRPA 969

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T  G+   ++   +         +
Sbjct: 970  TAHGT--VFLNLEDETGNVNVIVW 991


>gi|187922215|ref|YP_001893857.1| DNA polymerase III subunit alpha [Burkholderia phytofirmans PsJN]
 gi|187713409|gb|ACD14633.1| DNA polymerase III, alpha subunit [Burkholderia phytofirmans PsJN]
          Length = 1043

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/1036 (24%), Positives = 448/1036 (43%), Gaps = 62/1036 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   +++S L GA     ++ + +      +AITD  +L   +    +A    + 
Sbjct: 3    PEYAELFAFTNFSFLRGASHGEELVLRASQLGYSGLAITDECSLAGVVRAHVEAKKEKLP 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +IG    +   D                 ++LL    EGY  L E ++   +    K  
Sbjct: 63   LVIGSYFQLVNADR-----------SPAFGLILLAQNREGYGNLSEFITLGRMR-AAKGE 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +    + +       +        I    F  +      +L     +F  R +V L  
Sbjct: 111  YLLTPHDISKPEKGYTHLRGMPDCLAILVPDFPATEDALAVQLEWMNDVFAGRAWVGLTL 170

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D      V  +A  + +P+VAT N +          D + A+     V++     
Sbjct: 171  HQHAMDDIHRGIVEHVADQYRVPVVATGNVVMHVRSRKPLQDTMTAIRLRKTVAECGYDL 230

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++R  + +++     AL  T+ I  RC+F L       P  +  E       
Sbjct: 231  APNAEGHLRSRFRLGNLYP--TRALYETLNILERCNFSLDELRYEYPDELVPEGF----T 284

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E  LR +   G   R   G         + +++++ EL +I  +++  YFL V D +++
Sbjct: 285  HEAYLRQETYIGAHRRYPNGI------PHNVQEQIEHELQLIRELEYEAYFLTVYDIVRF 338

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A S   Y L +T++DP R ++LFERF++ +R   PD D+DF   R
Sbjct: 339  ARSQHI-LCQGRGSAANSAVCYCLGVTEVDPSRGNMLFERFISKERGEPPDIDVDFEHQR 397

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG +R A      + + + ALR+ G+AL +    VD++ K         
Sbjct: 398  REEVIQYIYRKYGRDRAAIAAAVSTYRPRGALRESGKALGVDPQIVDKVAKSHQWFDHSA 457

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              LQ  A+          +P +    +++ ++    RH S H+ G VI    L++LVP+ 
Sbjct: 458  DLLQRFAESG----LDPENPLIGLWAKLAAQILNFPRHLSQHSGGFVISRGKLTRLVPVE 513

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                +D    Q++   +E  GL+K D L L  L+ ++++LD +  Q G + ++  IP +D
Sbjct: 514  NATMADRSAIQWDKDDLEALGLLKIDVLALGMLSAIRRTLDIVSEQCGERFEMQDIPPED 573

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
              TY +++   T+G+FQ+ES      L  M+P    D++  V++ RPGPI       Y  
Sbjct: 574  AATYEMISRADTVGVFQIESRAQMSMLPRMKPREFYDLVIEVAIVRPGPIQGGAVHPYLR 633

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+ G E +      ++  L  T GV I+QEQVMQ+A L +G++  EAD LRRAM   K K
Sbjct: 634  RRQGLEPVTYPSDALEVALGRTLGVPIFQEQVMQVAILAAGFTPGEADQLRRAMAAWKRK 693

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +DK  +R ++G ++ G +K  A +IF+ +  F +YGF +SHAA++A++ Y ++W+K H
Sbjct: 694  GGLDKYYDRIVNGMTERGYTKDFAESIFQQIHGFGEYGFPESHAASFALLVYASSWLKCH 753

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD------FKVGDNRIY 836
             P  FLAA +           +  QDA++  ++++P  V     D             + 
Sbjct: 754  EPEAFLAAMLNSMPLGFYSASQLIQDAQRHGVKVLPADVTISNWDSVLERETSASRPSVR 813

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L+ +KG+    A  I  A A + F S+ D   R    + + +VL +   A +L     
Sbjct: 814  LGLSLLKGMKDGAAERIEAARAVRQFSSVSDLARRAQLDRNDLKVLAA---ANSLSLLAG 870

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R + L +       +  +     +     F                   +       + 
Sbjct: 871  NRREALWASVAAVPDSDILADACVDDETPAFG----------------APSEGEDIVADY 914

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              +      HPL + +P L +  +      +    G   R   +V  +Q+  T KG  + 
Sbjct: 915  NSMSLTLGRHPLSLLRPALLEQRLMPAATLMTYRNGRLARGCGLVTVRQRPGTAKG--VM 972

Query: 1017 WVTFSEPAKEYEANFF 1032
            ++T  +         +
Sbjct: 973  FLTIEDETGNVNIIIW 988


>gi|258424118|ref|ZP_05687000.1| DNA polymerase subunit III [Staphylococcus aureus A9635]
 gi|257845739|gb|EEV69771.1| DNA polymerase subunit III [Staphylococcus aureus A9635]
          Length = 1065

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/1025 (31%), Positives = 516/1025 (50%), Gaps = 83/1025 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L     G + L +L S + +         +
Sbjct: 63   GMTIYVTNGLNTVET-------------VVLAKDNNGLKDLYQLSSEIKM----NALEHV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L+      +I+             F N +      +  F                 
Sbjct: 106  SFELLKRFSNNMIII-------------FKNVADEHRDIVQVFDSH-------------- 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y + + V +     +  V   N  + + +D +    L A+  +T +      +    
Sbjct: 139  EDTYLDHRSVLV---QGIKHVWIQNVCYQTRQDADTISALAAIRDNTKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +     E+  +  D+  E L     IA++C+  L  H  +LP++     +         
Sbjct: 195  AHFLTEKEIKQL--DINQEYLTQVDVIAQKCNAELNYHQSLLPQYQTPNDES-------- 244

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                A   L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N
Sbjct: 245  ----AKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTN 300

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++V
Sbjct: 301  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKV 360

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L 
Sbjct: 361  IQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLD 418

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +   
Sbjct: 419  EAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDT 478

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPF+D + +
Sbjct: 479  G--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFEDQKVF 536

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   
Sbjct: 537  ELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPS 596

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ ++
Sbjct: 597  KVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESER 656

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A
Sbjct: 657  QHFIEGAKQNGYHEGISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYA 716

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  +
Sbjct: 717  NILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQS 776

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +
Sbjct: 777  VKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQV 836

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  +E++       +F       + K   E       ++  + E+  LGFY S HP+
Sbjct: 837  LDGDLNIEQD-----GFLF----DILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPV 887

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            D    +          +         I +       +Q +T+ G  + +VT ++  +  +
Sbjct: 888  D---KMFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLD 942

Query: 1029 ANFFP 1033
               FP
Sbjct: 943  GVIFP 947


>gi|256060212|ref|ZP_05450388.1| error-prone DNA polymerase [Brucella neotomae 5K33]
 gi|261324186|ref|ZP_05963383.1| error-prone DNA polymerase [Brucella neotomae 5K33]
 gi|261300166|gb|EEY03663.1| error-prone DNA polymerase [Brucella neotomae 5K33]
          Length = 1077

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/1049 (24%), Positives = 438/1049 (41%), Gaps = 77/1049 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  +   S++S L GA     ++++  A     I I D N L   +    +        
Sbjct: 3    PYFEMAAASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQ-------- 54

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                  DI  +   ++    +  F    P +V+       Y +L  L++        K  
Sbjct: 55   ----WKDIRKESGFRLFIGCRLSFIDGTPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGE 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
              +  + L     +  I +        D A           RL    +     +++ L  
Sbjct: 111  CHLEWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLELTM 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R  
Sbjct: 161  PHQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLL 220

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK   EMV +F D PEA+  T +     +F L       P           K 
Sbjct: 221  EKNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KT 276

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L +    G         I         +  ++ EL +IAR+++  YFL V D +  
Sbjct: 277  AQQHLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTH 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +R
Sbjct: 332  AREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHER 390

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   + +     
Sbjct: 391  REEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWSLSGGG 450

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+ 
Sbjct: 451  IDRQHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIG 506

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VDLSL 600
                      +++   I++ GL+K D L L  LT ++K+ D + Q   +      + L+ 
Sbjct: 507  PAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLAS 566

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 567  LPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMV 626

Query: 659  VVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
              Y  R++G+E      P         +  +L +T+GV ++QEQ M+IA   + ++  EA
Sbjct: 627  HPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEA 686

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LRRAM   +    +   +++ I G    G  +T A N F  +  F +YGF +SHAA++
Sbjct: 687  NQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASF 746

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  
Sbjct: 747  AHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNI 806

Query: 830  VG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +         +      I G        ++    + P+ ++ED   R+     +RR    
Sbjct: 807  LEETPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRLRL---DRRAFTL 862

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  A A       R   L ++  +            ++   +F     +   +    K  
Sbjct: 863  LADADAFGSLDIDRRAALWAVRRLP----------NDETLPLFRAAAASELAQEPRTKLP 912

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
               +S     +         GHPL   +  L   G+           G  +++A +V  +
Sbjct: 913  EMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVR 972

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG  + ++T  +         +P
Sbjct: 973  QRPGSAKG--VVFLTIEDETGIANIVIWP 999


>gi|323136507|ref|ZP_08071589.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242]
 gi|322398581|gb|EFY01101.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242]
          Length = 1074

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/1067 (25%), Positives = 442/1067 (41%), Gaps = 100/1067 (9%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  L   +++S L GA     +     A     I I D N+L   +       A   
Sbjct: 3    TPRYAELATTTNFSFLRGASHPEEMAATALALGHSGIGIADRNSLAGVVRAFSYLRAH-- 60

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
                       + D               P I+        Y RL  L++R     Q K 
Sbjct: 61   --------RESVGDFRLAVGARLVFRDGTPDILCYPKDRAAYGRLCRLLTRGNSRTQ-KG 111

Query: 128  SVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               + L  L E G  + +I++  G+  P           +A   L               
Sbjct: 112  DCALFLDDLIEFGEGQHVILMENGAPPPALMEALHGRLWLAATAL--------------- 156

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
              +    R R +  V+LA T  LPLVA N++     +     D L  +   T + +    
Sbjct: 157  --YGPRPRARLAGRVELAQTLRLPLVAVNDAHMHVADRRPLADALTCIREKTTLDEAGFL 214

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +LK+  EM  +F   P A+E +        F L   A   P     E  +   
Sbjct: 215  LSANAERHLKSGEEMARLFRLAPRAVEESARFIDALDFRLTDLAYEYP----SELREGYA 270

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E+  L   + AG   R  +GA       QD  + L+ EL ++A +K++ YFL V D ++
Sbjct: 271  SEQEALEALSRAGAMTRYPKGA------PQDVEKLLERELQLVAELKYAAYFLTVHDIVR 324

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A++  I +  GRGS A SV  + L IT++DP +  LLFERF++ +R   PD D+DF  +
Sbjct: 325  FAREQGI-LAQGRGSAANSVICFCLGITEVDPTKHDLLFERFISAERNEPPDIDVDFEHE 383

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  ++G ER        + + K+A+R++G+A  +    + RL          
Sbjct: 384  RREEVIQYIYTRFGRERAGLAAAVTTYRGKSAIREIGKAFGLSNDLLGRLSSA---AFGR 440

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                    D +R      ++    + L ++ ++EG  RH + H+ G VI    L ++VP+
Sbjct: 441  GSDGSRARDIARL-GLDASELRFAKALALAAEIEGFPRHLTQHSGGFVITRDRLDEVVPV 499

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                       +++   ++  GL+K D L L  LT L+K LD LAQ   +   LS IP +
Sbjct: 500  SPAAMEGRTTIEWDKDDLDALGLLKIDVLALGMLTCLRKGLDLLAQHYGIVHRLSSIPAE 559

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D   Y +++   T+G+FQ+ES      L  ++P+C  D++  V++ RPGPI  D +  Y 
Sbjct: 560  DQRVYAMISRADTVGVFQIESRAQMSMLPRLKPNCFYDLVIEVAIVRPGPIQGDMVHPYL 619

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R++GKE +      ++ +L  T GV ++QEQ M+IA + +G++ SEAD LRRAM   K 
Sbjct: 620  RRRSGKEPVSYPSKELEQVLGRTYGVPLFQEQAMRIAIVAAGFTPSEADQLRRAMATFKR 679

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               +   +++ I G ++ G ++  A   F  +  F  YGF +SHAA++A++ Y +AWMK 
Sbjct: 680  AGLIGGFRDKMILGMTRKGYAREFAERCFSQIEGFGTYGFPESHAASFALLVYASAWMKC 739

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK------------ 829
             YP  F  A +  +        +  +DAR+  I+     +N    D              
Sbjct: 740  RYPDVFACALLNSQPMGFYAPAQIVRDAREHGIETREADINASDWDCTLEEKETRTSRPP 799

Query: 830  -----------------------VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
                                   +GD  I      IKG+     R ++       +DS+ 
Sbjct: 800  ESRPVGDKRLPLHPHHAEMAGDILGDCAIRLGFRQIKGLAEEDMRRLVARRGKG-YDSVR 858

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            D   R +    +   L  L  A A    G SR   L +   +         NR    +++
Sbjct: 859  DVWLRAEL---SPATLTRLAEADAFASLGLSRRDALWAAAGL---------NRVGDKDDL 906

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
                   F+                   + R L     GHP+   +P L +  I   E  
Sbjct: 907  PLLRDLAFAPLEPDAHLPPMPPGEEVVEDYRFLSLSLKGHPVAFLRPRLARH-IIPCEAL 965

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G  + +A +V+ +Q+  T KG  + ++T  +         +P
Sbjct: 966  GRESDGRRVTVAGLVLLRQRPGTAKG--VVFMTIEDETGAANIIVWP 1010


>gi|309809270|ref|ZP_07703139.1| DNA polymerase III, alpha subunit [Lactobacillus iners SPIN
            2503V10-D]
 gi|308170383|gb|EFO72407.1| DNA polymerase III, alpha subunit [Lactobacillus iners SPIN
            2503V10-D]
          Length = 1040

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/1028 (32%), Positives = 522/1028 (50%), Gaps = 46/1028 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6    LQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            Q          +   G         ++++     GYQ ++ L S + L  + GK+ + + 
Sbjct: 66   Q----------LRINGLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
            L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116  LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLVKILPQSSNLYLGVFADK 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
                Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +       +  
Sbjct: 175  SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLKSIDDNQSIRDGYELTLKH 233

Query: 250  -PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +HYLK + ++   ++ L   EAL NT +++   +  ++   P LP+FI+ + D     
Sbjct: 234  VGNHYLKTKDKLCESYNSLGILEALRNTKQVSDDSNIEIKFTMPQLPKFIQHKFD----T 289

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L + A+ GL+ +       K      Y  RL +EL +I  M F+ YFLIV D I +
Sbjct: 290  SYEFLHHLAMTGLQAKF-----NKHDIPSKYLNRLKYELKIIDEMGFNDYFLIVWDVINY 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
                 I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   +R
Sbjct: 345  CHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPDNR 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       +D   K IP   +  
Sbjct: 405  RNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITIDSWLKAIPKSKSKI 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V + 
Sbjct: 465  TLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQ 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                  +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP DD 
Sbjct: 525  NGSL-GIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLDDP 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  RKN
Sbjct: 584  ATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +E +V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   EM 
Sbjct: 644  KEENVVYPDPVLINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSIEMK 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K    F++ A + G S   A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP +
Sbjct: 704  KIGVDFVNRAVQQGHSAAAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQ 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY-SLAAIKGV 845
            F  A +   + + +K+ K+  D +  NI+I  P +N    +F + D       L +I G+
Sbjct: 764  FYVALLNSNIYDKQKVTKYIMDLKLDNIKITLPDINYSKRNFYISDKGEIVTGLNSILGL 823

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                   IM     +P  SL DF  ++D+K L   ++ +L+ +GA D    +R  LL S 
Sbjct: 824  RMDFVEQIMN--LQRPIKSLTDFLWKIDTKYLLPDMIGNLIKSGAFDKLHKNRSALLASY 881

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             ++      V    +  +  +F   +    D        + +++ + E E  VLGF    
Sbjct: 882  KDLL-----VCIKMSGGNNVLFQALEPKELD------IKMPSNAQKEEWETSVLGFSPQI 930

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             P+   +   +K G K + +      G ++     ++  +   T+   ++ +  F++  +
Sbjct: 931  DPILAAQIYAKKYGFKPFSDFTFYDEGVSV---GKMMDIKVITTKNNKKMAFAKFNDLNE 987

Query: 1026 EYEANFFP 1033
              +   FP
Sbjct: 988  TVDFVIFP 995


>gi|262196390|ref|YP_003267599.1| DNA polymerase III subunit alpha [Haliangium ochraceum DSM 14365]
 gi|262079737|gb|ACY15706.1| DNA polymerase III, alpha subunit [Haliangium ochraceum DSM 14365]
          Length = 1074

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1072 (26%), Positives = 459/1072 (42%), Gaps = 106/1072 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  L   S++S LEGA   + ++++  A    A+A++D + L+  +     A   G + 
Sbjct: 3    TYAPLWCKSNFSFLEGASHPDELIEEAHALGLRALALSDRDGLYGVVRAHVCAEKIGFKL 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G Q+ +D                    IVLL     GY  L  L+++       K S 
Sbjct: 63   IHGAQVSVDDGS----------------QIVLLCRDRAGYANLCHLLTKGRRRSD-KGSS 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSG---------------PIDRAFFFNSSQVAEKRLLTF 174
            ++    +      GLI L GG+                  I R           +     
Sbjct: 106  QVSWREVC-AHAGGLIALWGGAGSLLTRPGENRPGGVPADIPRPLGGRPQSYLGRVADDL 164

Query: 175  KKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++ FGD LY    RHR  +    E+++   A    LP+ A    L+ S       DVL  
Sbjct: 165  REAFGDALYALCARHREAEEVVTEARLRARAERFGLPVAAAVEVLYHSRARRPLQDVLTC 224

Query: 234  VAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            + H   +S   R  R   +H L +      +F D P A+  T++IA RC F L       
Sbjct: 225  LRHHVTLSTAGRYIRANDEHDLHSPQAFGILFDDDPAAVARTLDIAARCQFGLGEIRYRY 284

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P           K     LR  +  G   R       +G    D R +L  EL +I  + 
Sbjct: 285  PSERLPSG----KTTSEWLRELSFEGARWRY------RGEVPADVRAQLTRELALIDELD 334

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            + GYFL + + +++ +   I +  GRGS A S   Y L IT +DP+R  LLFERFL+ +R
Sbjct: 335  YGGYFLTMYEIVRFCRAQGI-LCQGRGSAANSAVCYCLDITAVDPVRMGLLFERFLSRER 393

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
               PD D+D   DRR+EVI++V +KYG +  A +      + ++A+RDVG+ L +P + +
Sbjct: 394  AEPPDIDLDIEHDRREEVIQHVYDKYGRDHAAMVAVVIRYRPRSAVRDVGKVLGIPATSL 453

Query: 473  DRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            DR  KL+ +        L+    D          P+   L  ++ ++    RH S H  G
Sbjct: 454  DRCAKLLSHYEGITAEALEQAGMDPHL-------PAHQHLGRLASEILDFPRHLSIHPGG 506

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-A 590
             ++G  P+  LVP+     +   V Q++   +E  GL K D LGL  L  L +  D +  
Sbjct: 507  FLLGHEPVHSLVPIENGAMAGRTVIQWDKNDLEDLGLFKVDLLGLGALNQLHRCFDLVSE 566

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
             RG+ + ++ IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ 
Sbjct: 567  HRGIDLSMATIPADDTATYDMICRADTVGVFQIESRAQMSMLPRLRPRYFYDLVIEVSIV 626

Query: 651  RPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGPI    +  Y  R++G EKI   H  ++P+L+ T GV ++QEQVM++A + + Y+  
Sbjct: 627  RPGPITGGMVHPYLRRRHGLEKIEYPHESLEPVLERTLGVPLFQEQVMRLAMVAADYTPG 686

Query: 709  EADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EAD LRR M    +   +D+ +ER +S  ++ GI+   A  +FE +  F +YGF +SHAA
Sbjct: 687  EADQLRRDMAAWRRSGRIDQHRERLVSAMTRKGIAAEFAERVFEQIRGFGEYGFPESHAA 746

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++A+I+Y TA+M+ H+P E+  A +  +            DAR+  + + P  V     D
Sbjct: 747  SFALIAYATAYMRCHFPAEYACALLNAQPMGFYSPATIINDARRHGVSVRPIDVGASAWD 806

Query: 828  FKVG---------------------------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
              +                               I   L  +KG+       I +A A  
Sbjct: 807  CTLEPLPASQRRTTEENGDSGDSDSDAPARICYAIRMGLRYVKGLRRDAGTRIEDARARA 866

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            PF  L DF  R      + R    L  +GAL  FG +R  +L  +   Q+          
Sbjct: 867  PFADLGDFVRRTRL---DERSHTRLAESGALAAFGRNRRDVLWQVRGHQRA--------K 915

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
            +   ++          ++      + +                 GHPL+  +  LR   I
Sbjct: 916  SDTLSLPQTGPAPSLAQLDQLDEILWDYQASLH--------STRGHPLEPLRASLRAQNI 967

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                       G  +R A +V+ +Q+  T  G  + ++T  + +       +
Sbjct: 968  ADARSVQRMRHGQRLRYAGLVICRQRPPTAAG--VTFMTLEDESGFVNLVIW 1017


>gi|332041001|gb|EGI77369.1| DNA polymerase III, alpha subunit [Hylemonella gracilis ATCC 19624]
          Length = 1083

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/1057 (25%), Positives = 456/1057 (43%), Gaps = 85/1057 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S++S   GA S   ++ +  A    A+AITD  ++   +    +A   G+ 
Sbjct: 24   PAYAELHCLSNFSFQRGASSAEELVARAHALGYSALAITDECSMAGVVRAHVEAQKLGLS 83

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY-------- 120
             +IG +L +++ D    T            +VLL  +  GY +L EL+++          
Sbjct: 84   LLIGTELRVNVDDQTHFT------------LVLLARSRVGYGQLCELITQARGHTVTARE 131

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 +   R+    L+    E L +L     G   +      +   + +L   +  F  
Sbjct: 132  RERGLRYQQRMDGWPLELDRHELLALLVPQRDG--LQPEAPGFAARLDAQLQWLRARFAP 189

Query: 181  RLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              ++ ++  H   D     ++        +PLVA               DV+ A+     
Sbjct: 190  HGWLAVELLHGLDDERWLRELQAAGARCGVPLVAAGGVHMHVRSRKPLQDVMTAIRLGRP 249

Query: 240  VSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            V++     +   + +L++R             L  TV +A  C F L       P  +  
Sbjct: 250  VAECGFELQPNAEAHLRSRQ--RLAALYPAALLAETVRLAGLCHFSLDELKYEYPEEVVP 307

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              +       + LR   + G + R  QG           R++++ EL +I+ +++  YFL
Sbjct: 308  AGE----TPASYLRRATLEGAQTRYPQGV------PTAVRRQIEHELALISELRYEKYFL 357

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
             V D ++ A+   I +  GRGS A SV  Y L +T++DP R S+LFERF++ +R   PD 
Sbjct: 358  TVYDIVRHARDEKI-LCQGRGSAANSVVCYCLGVTEVDPARTSVLFERFISKERNEPPDI 416

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF   RR+EVI+Y+  KYG  R A      +  A+ A+RDVG+AL +    +D L K 
Sbjct: 417  DVDFEHQRREEVIQYLYTKYGRGRAALTAAVHTYHARGAIRDVGKALGLDEDLIDALAKA 476

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                    V+ + +   S       + P +  LLE+++ L G  RH S H+ G V+    
Sbjct: 477  HQWWDGREVNRERL---SALGVEVDSRP-IRLLLELTRPLLGFPRHLSQHSGGFVLTGDK 532

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L++ VP+           +++   I+  GL+K D L L  L+ ++++LDF++Q RG    
Sbjct: 533  LTRTVPVVPAAMEGRTTIEWDKDDIDALGLLKVDVLALGMLSAIRRTLDFVSQWRGRPFR 592

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  IP +D +TY ++     +G+FQ+ES      L  ++P C  D++  V++ RPGPI  
Sbjct: 593  LQDIPPEDPQTYEMICRADVVGVFQIESRAQMSMLPRLRPRCFYDLVIEVAIVRPGPIQG 652

Query: 658  IVVYN-----NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
             +V+       R+   E +   +  + P L  T GV I+QEQVMQIA + +G++  EAD 
Sbjct: 653  GMVHPFLEQRERQRRGEPLALPNEALRPALARTLGVPIFQEQVMQIAIIAAGFTPGEADQ 712

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM   + K  +DK ++R I G +  G  +  A  IF  +  F +YGF +SHAA++A+
Sbjct: 713  LRRAMAAWRRKGGVDKFQQRLIEGMTARGYEREFAEAIFRQIEGFGEYGFPESHAASFAL 772

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            + Y +AW+K H P  FLA  +           +  QDA++  + + P  V     D  + 
Sbjct: 773  LVYSSAWLKRHEPAAFLAGLLNSLPMGFYGPSQLVQDAQRHCVTVRPVDVLHSEWDCTLE 832

Query: 832  DN----------------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                               +   L  + G+    A  I+ A A  P  + ED   R    
Sbjct: 833  REEGYEGDEGEHRPATRAAVRLGLRLVAGLKQERAHRIVAARAQGPLLNTEDLALRAGLD 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
             L+   L S   A AL      R Q +     +      +                    
Sbjct: 893  ALDLNALAS---ADALMGLSGHRRQQVWDASALHAAPALLRGA-------------PVHE 936

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
              + L         V    +   LG     HPL + +P L ++G++  ++ +A   G   
Sbjct: 937  PTLALPAAPEGEEIV---FDYAALGLTLRRHPLALLRPRLSRLGVQTAQDLLAWPDGRPA 993

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            R   +V+++QQ  T KG  + +VT  +     +   +
Sbjct: 994  RACGLVLARQQPGTAKG--VVFVTLEDETGSVQVIVW 1028


>gi|209543499|ref|YP_002275728.1| DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus
            PAl 5]
 gi|209531176|gb|ACI51113.1| DNA polymerase III, alpha subunit [Gluconacetobacter diazotrophicus
            PAl 5]
          Length = 1049

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/1036 (25%), Positives = 449/1036 (43%), Gaps = 66/1036 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PS+  LQ  ++YS L GA   + +  +  A    A+ I D + +   ++  + A   G++
Sbjct: 2    PSYAELQAVTNYSFLRGASHPDELFARARALGHAALGIVDHDGVAGIVQSWKAAEKHGVR 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++GC                +      P ++   +    + RL  L++          +
Sbjct: 62   LVVGC----------------RLVLRDGPPLLAYPTDRAAWGRLCRLLTASKRKAADGTA 105

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR-LLTFKKLFGDRLYVNLQ 187
              +  + L    T+GLI++              +    A  R L   + L GDR Y+ L 
Sbjct: 106  PGLRRADL-HRATDGLILIL-----------LPDDPDAALARDLDWLRALCGDRGYLALT 153

Query: 188  -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
             R R  D  R  ++ ++A    +  V T + L+         DVL  +     + +  + 
Sbjct: 154  LRRRPGDAVRLHRLAEMARAAGVADVVTGDVLYHEPARAMLQDVLTCIRTGCTIDELGQG 213

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 D +LK+ +EM  +++  P AL  T EIA RC+F         P    +E DD  +
Sbjct: 214  REAYADRHLKSPAEMAVLYAAHPAALARTREIAARCTFSPADLRYQYP----EESDDPSE 269

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              ++ L   A A L  R   GA          R+++++EL +I  + ++ YFL V   ++
Sbjct: 270  TPQDRLERLARAALRDRYPAGA------PDPVRRQVEYELGLIRDLHYAPYFLTVHTIVR 323

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
             A+   I +  GRGS A S   + L IT+IDP   +LLFERF++ +R   PD D+DF  +
Sbjct: 324  QARSQGI-LCQGRGSAANSAVCFVLGITEIDPASSNLLFERFVSAERQEPPDIDVDFESE 382

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+++  +YG +R A   T    +A+ ALRDVG+ L +P      L     +  A 
Sbjct: 383  RREEVIQWIYRRYGRDRAALCATTMRYRARGALRDVGKVLGLPADVTGLLS---THLGAL 439

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                 A  + +R     L +  +   L+++ +L G  R   TH  G V+    L  LVP+
Sbjct: 440  SFDEDAFHERARELGLNLRNRRLLLTLQLAGELIGFPRQLGTHPGGFVLTRDRLDDLVPI 499

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                  D  +  ++   I+    +K D LGL  L  ++++ D L      ++ LS IP  
Sbjct: 500  QPAAMDDRQIIVWDKDDIDTLRFMKVDVLGLGMLGCMRRAFDMLEDHYGKRLTLSGIPPG 559

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D +TY +++   T+G FQ+ES      L  M+P    D++  V++ RPGPI  D +  Y 
Sbjct: 560  DADTYAMISRADTIGTFQIESRAQMAMLPRMKPREFYDLVIQVAIVRPGPIQGDMVHPYL 619

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+  +  +    P +  +L +T GV ++QEQ MQIA   +G++  EAD LRRAMG  + 
Sbjct: 620  QRRADRSLVDYPSPELRDILHKTLGVPLFQEQAMQIAIRCAGFTPGEADALRRAMGTFRG 679

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               +   ++R I G       +  A  IF  L  F  YGF +SHAA++A+I+Y ++WMK 
Sbjct: 680  HGTVTYFRDRLIDGMMARHYPRDFAERIFRQLEGFGSYGFPESHAASFALIAYASSWMKC 739

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIY 836
            HYP  F AA +  +     +  +  +DAR   + + P  VN    D  +         + 
Sbjct: 740  HYPDVFCAALLNSQPMGFYRPAQIVRDARNHGVTVHPVCVNASRWDCTLERAPGRSTAVR 799

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  +KG+  T A  ++ +    P+D +ED   R     L    LE L  A A    G 
Sbjct: 800  LGLRMVKGLSNTDAARLVASRMP-PYDGIEDVWRR---SGLGPDALECLAQADAFHALGR 855

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R   L  +  + +    +                      + L   +     V    + 
Sbjct: 856  DRRAALWDIKGLAESPLPLFAAADRGLNRPL---PECVEPSVPLTAMTEGQEVV---EDY 909

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
               G     HP+   +  LR  G+    +  A   G  + +  +V+ +Q+  T +G  + 
Sbjct: 910  HATGLTLRRHPVAFLRDGLRDRGMIACADLRALRDGRRVVVPGLVLMRQRPGTAQG--VL 967

Query: 1017 WVTFSEPAKEYEANFF 1032
            ++T  +         +
Sbjct: 968  FMTIEDETGMANLVLW 983


>gi|159039006|ref|YP_001538259.1| error-prone DNA polymerase [Salinispora arenicola CNS-205]
 gi|157917841|gb|ABV99268.1| DNA polymerase III, alpha subunit [Salinispora arenicola CNS-205]
          Length = 1124

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/1055 (26%), Positives = 459/1055 (43%), Gaps = 81/1055 (7%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            + +  +  L  H+++S L+GA     + ++       A+A+TD +  +  + F++ A A 
Sbjct: 69   DDAVPYAELHTHTNFSFLDGASHPEELAEEATRLGLTALAVTDHDGFYGVVRFAEAARAL 128

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
             +  I G +L +D+            P P    ++LL    EGY RL   +SR  L    
Sbjct: 129  HLPTIFGAELSLDLPG-----PPNGEPDPLGRHLLLLAHGHEGYARLAATISRAQLRGGE 183

Query: 126  KQSVRI-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
            K       L+ +     + +++LTG   G +  A        A + L     LF  + + 
Sbjct: 184  KGRPVYGELAEVAAELRDHVLVLTGCRKGHVPAALLTEGVDAAARELDRLTALFGAETVA 243

Query: 184  VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            V L  H    D  R   + +LA    LP VATNN  + +         L AV     + +
Sbjct: 244  VELTDHGHPVDADRNDALAELADAAGLPTVATNNVHYATPGRRRLATTLAAVRARRSLDE 303

Query: 243  -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                       +L++ +EM + F+  P A+    E     +F LQ+ AP LP +      
Sbjct: 304  IDGWLPAAGTAHLRSGAEMAARFAAYPGAVARAAEFGAELAFDLQLVAPALPAYPVPSG- 362

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 E + LR+    G   R          H + Y  +L+ ELN+I  + F GYFL+V 
Sbjct: 363  ---HTEMSWLRHLTARGARERYG----PPEAHPEAY-AQLEHELNMIEELGFPGYFLVVY 414

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + + ++ +I    GRGS A S   YAL IT++D +R  LLFERFL P+R   PD D+D
Sbjct: 415  DIVTFCREQDI-YCQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVD 473

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
                RR+EVI++V  +YG E  AQ+    S + ++A+RDV +A      Q D   K +  
Sbjct: 474  IESHRREEVIQHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQVDR 533

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
              +                   A+   + ++  +  ++   RH   H+ G+VI DRP+ +
Sbjct: 534  WGSV--------------AEVDAEGIPEPVVAYADAVQTFPRHLGIHSGGMVICDRPVIE 579

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            + P+         V Q++       GL+KFD LGL  L  L    D +  R   ++L  +
Sbjct: 580  VCPVEWGRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLAALHHGYDMIGTR---LELGDM 636

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--V 659
              DD E Y +L     +G+FQ+ES      L  ++P C  D++  V+L RPGPI      
Sbjct: 637  TLDDSEVYDMLCRADAVGVFQVESRAQMATLPRLRPRCFYDLVVEVALIRPGPIQGGSVH 696

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-G 718
             Y  RKNG+E +   HPL+   L++T GV ++QEQ+MQ+A  L+G+  +EAD LRRAM  
Sbjct: 697  PYIRRKNGQEPVTYPHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAEADQLRRAMGA 756

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+  E M +  +R  +G ++ GI+  +A +++  L  FA YGF +SHA ++A + Y ++W
Sbjct: 757  KRSVERMARIADRLYAGMAERGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASSW 816

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD----------- 827
            +K ++P  FLAA +  +       +    DAR+  +++  P VN                
Sbjct: 817  LKRYHPAPFLAALLNAQPMGFYSPQTLVDDARRHGVEVRRPDVNASGAGAVLESTPNTRW 876

Query: 828  ----------FKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKK 876
                      + +G   +   L  ++ +G   A  I+    A   +  + D   R     
Sbjct: 877  GSQPGEPPHAWGLGGPAVRLGLDGVRALGAEVAERIVAERTAHGLYQDMSDLARRAGLTA 936

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
                 LE+L  A A  CFG +R Q                    ++ + +     GT + 
Sbjct: 937  ---AQLEALATADAFACFGVTRRQ----------ALWAAGAAAQDRPDRLPGTVPGTVA- 982

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
              TL   +  +   R   +    G     HP    +  L  +G    ++      G  IR
Sbjct: 983  -PTLPGMAAVD---RLVADVWATGLSPESHPARFIRDQLDALGAVPIDQLARVEPGRRIR 1038

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +  +V  +Q+  T  G  + ++   +         
Sbjct: 1039 VGGIVTHRQRPATAGG--VTFLNLEDETGMLNVTC 1071


>gi|229824039|ref|ZP_04450108.1| hypothetical protein GCWU000282_01343 [Catonella morbi ATCC 51271]
 gi|229786393|gb|EEP22507.1| hypothetical protein GCWU000282_01343 [Catonella morbi ATCC 51271]
          Length = 1116

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/1024 (30%), Positives = 513/1024 (50%), Gaps = 45/1024 (4%)

Query: 15   QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             VHS+ SLL   L++ + ++         + + D ++L  AL+F  +  AAG++ +IG  
Sbjct: 4    NVHSANSLLASTLTIPSYVEAAKERGYQILGLADVHSLQGALDFYNRCQAAGLKAMIGAT 63

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
                      +   G      V   ++      GY  LI L+     L     S      
Sbjct: 64   ----------IKLPGALKQTQVYPFLVYALNQAGYYELIGLI---RRLSHQPLSPGAIWD 110

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRHRGYD 193
            +L +     L  ++ G +  +++    +  Q A   L   +++F    +Y+ +     Y+
Sbjct: 111  YLTQ-SCHNLFYISCGHASEVEQTLIHSGDQEASLVLERLEQVFGPGNVYLGVAAF-PYN 168

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +   A  +++PLV       L++ D  +  VL A+  +  +  + R      HY
Sbjct: 169  PVEGEALKAFAKAYQVPLVVGQGVSTLNQGDAFSLKVLEAIGANETLDVELRAM-QGVHY 227

Query: 254  LKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            + N +++ + +  L  A  L N+ ++A R    L  +   LP+F   +           L
Sbjct: 228  VYNWADLEAQYVRLGLADCLTNSRQLADRMQVSLPQNQAFLPKFPTPDHLPAS----QFL 283

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R+   + LE                Y+QRLD+EL VI  M FS YFLIV D I + + + 
Sbjct: 284  RDLTQSALEDLRPADLA-------VYQQRLDYELEVIDSMGFSDYFLIVWDIIVYCQSHA 336

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I VGPGRGS AGS+ +Y L IT +DP++++LLFERFLNP+R +MPD D+D   ++R +V+
Sbjct: 337  IRVGPGRGSAAGSLVSYLLGITRVDPIQYNLLFERFLNPERYNMPDIDMDIPDNKRQQVL 396

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             YV  +YG E+VAQI T G+  A+AA+RD  R L      +    + IP +    +  QA
Sbjct: 397  HYVVERYGQEQVAQIATLGTFGARAAMRDTLRVLGADSETLRVWARAIPKELDISLP-QA 455

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                +  R+      +  +L +++Q +EGL RH STHAA +VI D+ L Q++P+      
Sbjct: 456  YQKSAALRQLVSQSETNQQLFQVAQTIEGLPRHISTHAAAVVIHDQALDQVIPVVERPNQ 515

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
             L +TQF M  +EK GL+K DFLGL+ L LL   +  + +     D+  I  +D +T  L
Sbjct: 516  PL-MTQFTMYDVEKVGLLKMDFLGLRNLNLLDTIIKQVQKSQADFDIEAISMEDAQTLAL 574

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                 T G+FQ ES G++Q L  +QP+  EDI+A+ +L+RPGP+  I  Y  R++GKE  
Sbjct: 575  FRAADTNGVFQFESDGIKQVLRKLQPERFEDIVAVNALFRPGPMKQIDHYVARRHGKESY 634

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
             +IHP+++ +L  T G+I+YQEQVMQ+ Q ++G+SL +AD+LRRAMGKK  + M +++E 
Sbjct: 635  QAIHPILEEILAPTYGIIVYQEQVMQVCQRMAGFSLGQADLLRRAMGKKQADVMAREREH 694

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            FI GA + GI   IA   ++ + +FA YGFN+SHA  Y+ +++Q A++K HYP+ F  A 
Sbjct: 695  FIRGAREQGIEPEIASATYDYIYEFASYGFNRSHAVVYSTLAFQLAYLKVHYPLAFYQAL 754

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            + +   N   +  +  +A++    ++  ++N   + F V   ++   L+AI+ +      
Sbjct: 755  LNMGSSNQTTMADYILEAKRHTGPLLGLNLNESQIGFSVSGQQLQVGLSAIRTLRHDFVS 814

Query: 852  HIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
            HI+E      P+  L  F  R+  K L    LESL+  GA D  G +R  LL++LD + +
Sbjct: 815  HIVEDRQLLGPYTGLLHFMQRLPKKWLKHEWLESLISVGAFDYTGMNRPTLLKNLDKLMQ 874

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
               +     +  + ++F         +  +E     N S + + E  +LGF   GHP+  
Sbjct: 875  SVTF-----SGGNLSLFPEL------EPRIEWVEDWNPSQKRDKEVEILGFSLEGHPVAT 923

Query: 971  YKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            Y+   +    +    + +A      ++   +V   +   T+K   + ++   +       
Sbjct: 924  YQAFAKSHPNLLSVRDILAAQPNLKVQTLVLVKGIRVINTKKQELMAFLELEDEVASISG 983

Query: 1030 NFFP 1033
              FP
Sbjct: 984  VVFP 987


>gi|218297030|ref|ZP_03497707.1| DNA polymerase III, alpha subunit [Thermus aquaticus Y51MC23]
 gi|218242585|gb|EED09122.1| DNA polymerase III, alpha subunit [Thermus aquaticus Y51MC23]
          Length = 1645

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/837 (39%), Positives = 474/837 (56%), Gaps = 72/837 (8%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAAD--QQPAIAITDTNNLFSALEFSQKA 62
           +     F HL  H+ +SLL+GA  L ++L  +     + PA+A+TD  NLF A+EF +KA
Sbjct: 1   MGSKLKFAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKA 60

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
            A G++PIIG +  +  +       +GK        + LL     GYQ L+ L SR YL 
Sbjct: 61  TAMGVKPIIGYEAYVAAESRFDR-KRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYLE 119

Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
               +  RI    L+E  +EGLI L+G     I +    +   +AE RL  +  +FGDR 
Sbjct: 120 G-FYEKPRIDREILRE-HSEGLIALSGCLGAEIPQFILQDRLDLAEARLNEYLSIFGDRF 177

Query: 183 YVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           ++ +Q H   ++ + +QV+ + A  + L +VATN+  ++ +ED  AH+VL+A+   T + 
Sbjct: 178 FIEIQNHGLPEQQKVNQVLKEFAQRYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTTLD 237

Query: 242 QKDRPRVTPDHYL-KNRSEMVSIFSDLP---EALENTVEIARRCSFILQVHA---PILPR 294
             +R R   D +  K   EM ++  ++    E  +NTVEIAR C   L +       +PR
Sbjct: 238 DPERWRFPCDEFYVKTPEEMRAMLPEVEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPR 297

Query: 295 FIEKECDDIQKEEENELRN----------------------------------------- 313
           F   E     + E   LR                                          
Sbjct: 298 FPLPEG----RTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERVLAEA 353

Query: 314 ------KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
                 KA   L  RL      + + A+    R  +EL+VI RM F GYFLIV D+I WA
Sbjct: 354 LARVEEKAWEELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWA 413

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           + + + VGPGRGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF    R
Sbjct: 414 RGHGVSVGPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRER 473

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           D VI+YV+ +YG ++VAQI TFGSL +KAAL+DV R   +P+ + + L KLIP     P 
Sbjct: 474 DRVIQYVRERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPK 533

Query: 488 SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            LQ A+      R     D  + +++E++ +LEGL RHAS HAAG+VI   PL+ LVP+ 
Sbjct: 534 PLQEAVQVVPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLM 593

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
           RD +   PVTQ++M  +E  GL+K DFLGL+TLT L ++   + + +GV++D   +P DD
Sbjct: 594 RD-QEGRPVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVELDYDRLPLDD 652

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
            +T+ LL+   T G+FQLES GM   + G++P  +EDIIALVSLYRPGP+++I  Y  R 
Sbjct: 653 PKTFELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRH 712

Query: 666 NGKEKIVS---IHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
           +G+E +      H    + P+L ET G+ +YQEQ+MQIA  ++GYSL EAD+LRRAMGKK
Sbjct: 713 HGQEPVSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKK 772

Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             EEM K +ERF+ GA + G+ +  A  +F++L  FA+YGFNK   A   V+ ++T 
Sbjct: 773 RVEEMQKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKCLPARAKVVDWRTG 829



 Score =  283 bits (725), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 101/277 (36%), Positives = 150/277 (54%), Gaps = 12/277 (4%)

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
             + SHAAAY+++SYQTA++K HYPVEF+AA +++E  + +K+ ++ +DAR   I ++PP 
Sbjct: 1238 VHNSHAAAYSLLSYQTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARALGIPVLPPD 1297

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNR 879
            +N    DFKV    I + L+A+K VG   AR I+E      PF SL DF  R+  + +N+
Sbjct: 1298 INRSGFDFKVVGEEILFGLSAVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNK 1357

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R LESLV AGALD FG  R +LL SL+ + ++A    +   +    +FA       ++  
Sbjct: 1358 RALESLVKAGALDAFG-DRARLLASLEPLLRWAAETRERGRSGLVGLFAEV-----EEPP 1411

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NNI 995
            L + S  +       E+  LG Y SGHP+  Y P LR++     EE    +RG      +
Sbjct: 1412 LVEASPLDEITMLRYEKEALGIYVSGHPVLRY-PGLREVASCTIEELSEFVRGLPGRPKV 1470

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             L+ MV    +K TR G  +   T S+     E   F
Sbjct: 1471 LLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVF 1507


>gi|259046884|ref|ZP_05737285.1| DNA polymerase III, alpha subunit [Granulicatella adiacens ATCC
            49175]
 gi|259036507|gb|EEW37762.1| DNA polymerase III, alpha subunit [Granulicatella adiacens ATCC
            49175]
          Length = 1117

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/1037 (31%), Positives = 516/1037 (49%), Gaps = 60/1037 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQV SSYSLL+  + LN  +          +A+TD   L  A+EF ++    GIQP
Sbjct: 2    PYTTLQVFSSYSLLKSTIRLNEYVATGKLLGYKQLALTDDGVLHGAVEFYERCIQNGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC  +I  + +                +V+    ++GY+ L++L +   L  QG    
Sbjct: 62   ILGCTFEIAWKSDASKKEM----------LVVYAKGSKGYESLLKLST---LYQQGLTWT 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            +    W+     +  I+L    S  +  A      +   K +          + + +   
Sbjct: 109  KEMTEWIATHSEDVKIVLPPTDSEWVA-ANSKGRLEAVLKAVKEEYA----GVEIAIGIT 163

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            R   +R    ++ +      +  VA + S +L+  DY    VL A+     +S       
Sbjct: 164  REMVERSEFEKMREGIEAAGVLPVAFSVSRYLNATDYFPWKVLQAIRLGGTLSFTQED-A 222

Query: 249  TPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            T    L   + M  +F  +     L N  +  +     + +   +LP+F   +     K 
Sbjct: 223  TGSESLPEATSMAKVFQVVEGGVLLSNLEKFTKDLVVEIPLRDTMLPKFPVPDG----KT 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L     A +        +  G     Y  RL  EL VI  M F  YFLIV D ++ 
Sbjct: 279  SAQFLYELCEAAM--------LEMGVTTPIYVNRLKEELAVIHEMGFDDYFLIVWDIMRH 330

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I  G GRGS AGS+ AY L IT +DP+R+ LLFERFLN +R +MPD D+DF  D+
Sbjct: 331  AREKGIQTGAGRGSAAGSLVAYLLHITGVDPIRYHLLFERFLNRERYTMPDIDLDFPDDK 390

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R++++ Y+ +KYG++ VAQI+TFG+L AK  LRDV +        V +    I       
Sbjct: 391  REDILAYIVSKYGNQNVAQIVTFGTLGAKQVLRDVCKVFGENIITVQKFSNNI--AQGKV 448

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               Q   ++  FRE   +     +L ++++ LEGL RH+S HAAG+V+    L++ VP+ 
Sbjct: 449  TLEQTYKENKAFREHIESSERNRKLYQVAKALEGLPRHSSVHAAGVVLSQDALTKTVPLM 508

Query: 547  RDVRS--------DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD 597
            +  +         D  +TQ+ M+ +EK GL+K D LGL  LTLL K++         ++D
Sbjct: 509  KRDKGYSASLQEADWMLTQYAMQAVEKVGLLKMDLLGLSNLTLLHKAIQQTQKITKKELD 568

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  T+ L     T GIFQ ES G+R+ L+ M+P   ED++A++SLYRPGP++ 
Sbjct: 569  ITKIPLDDPRTFELFQKAQTNGIFQFESDGIRRVLKEMKPTEFEDLVAVLSLYRPGPMEQ 628

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  + NRK G E +   H  +  +L+ T G+++YQEQVMQ A  ++G+SL EAD+LRRA+
Sbjct: 629  ISHFINRKKGTEIVQYPHASLQRILEPTYGILVYQEQVMQAASEMAGFSLGEADILRRAI 688

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  E +  QKE+F+ GA   G  +  A  +++ + KFA+YGFNKSHA AYA++SYQ A
Sbjct: 689  GKKNSETIAAQKEKFVQGAVSKGYKQEDAETVYDYIEKFANYGFNKSHAVAYAMLSYQLA 748

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YP  F  A          K++ +  +ARQ  I+I+PPS+N    DF   D+ +  
Sbjct: 749  YLKANYPTAFFTALFQNASAKSSKLQDYLVEARQLGIKILPPSINNSFADFVANDSGVIV 808

Query: 838  SLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L +IKG+       I++   +  PF   +DF  R+ ++     +L +L+ AGA D FG 
Sbjct: 809  GLNSIKGIRRDFVESIVKNRYEYGPFKGFQDFAYRMGAQYTKEPLLVALINAGAFDEFGE 868

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  L  ++D + K  ++   N + + +++          ++       E    R   E 
Sbjct: 869  TRATLKANVDAVAKSVKFHGLNLSLE-DDL----------EVAFTHVEEEPLLQRIGEEI 917

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             VLGF  S HP   Y P+++   I+      +      +R   ++V  ++  TRKG ++ 
Sbjct: 918  EVLGFSISPHPSSKYDPLMKSGWIQAI---QSVFEEGYMRFVGLIVDIRKISTRKGEKMA 974

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +VT  + +   +   FP
Sbjct: 975  YVTLQDASGMIDVVVFP 991


>gi|254700882|ref|ZP_05162710.1| error-prone DNA polymerase [Brucella suis bv. 5 str. 513]
 gi|254707232|ref|ZP_05169060.1| error-prone DNA polymerase [Brucella pinnipedialis M163/99/10]
 gi|254709225|ref|ZP_05171036.1| error-prone DNA polymerase [Brucella pinnipedialis B2/94]
 gi|254713353|ref|ZP_05175164.1| error-prone DNA polymerase [Brucella ceti M644/93/1]
 gi|256030748|ref|ZP_05444362.1| error-prone DNA polymerase [Brucella pinnipedialis M292/94/1]
 gi|261314714|ref|ZP_05953911.1| error-prone DNA polymerase [Brucella pinnipedialis M163/99/10]
 gi|261316728|ref|ZP_05955925.1| DNA polymerase III alpha subunit [Brucella pinnipedialis B2/94]
 gi|261321081|ref|ZP_05960278.1| error-prone DNA polymerase [Brucella ceti M644/93/1]
 gi|261751394|ref|ZP_05995103.1| error-prone DNA polymerase [Brucella suis bv. 5 str. 513]
 gi|265987799|ref|ZP_06100356.1| error-prone DNA polymerase [Brucella pinnipedialis M292/94/1]
 gi|261293771|gb|EEX97267.1| error-prone DNA polymerase [Brucella ceti M644/93/1]
 gi|261295951|gb|EEX99447.1| DNA polymerase III alpha subunit [Brucella pinnipedialis B2/94]
 gi|261303740|gb|EEY07237.1| error-prone DNA polymerase [Brucella pinnipedialis M163/99/10]
 gi|261741147|gb|EEY29073.1| error-prone DNA polymerase [Brucella suis bv. 5 str. 513]
 gi|264659996|gb|EEZ30257.1| error-prone DNA polymerase [Brucella pinnipedialis M292/94/1]
          Length = 1077

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/1049 (24%), Positives = 437/1049 (41%), Gaps = 77/1049 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  +   S++S L GA     ++++  A     I I D N L   +    +        
Sbjct: 3    PYFEMAAASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQ-------- 54

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                  DI  +   ++    +  F    P +V+       Y +L  L++        K  
Sbjct: 55   ----WKDIRKESGFRLFIGCRLSFIDGTPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGE 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
              +  + L     +  I +        D A           RL    +     +++ L  
Sbjct: 111  CHLEWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTM 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R  
Sbjct: 161  PHQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLL 220

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK   EMV +F D PEA+  T +     +F L       P           K 
Sbjct: 221  EKNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KT 276

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L +    G         I         +  ++ EL +IAR+++  YFL V D +  
Sbjct: 277  AQQHLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTH 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +R
Sbjct: 332  AREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHER 390

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       
Sbjct: 391  REEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGG 450

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+ 
Sbjct: 451  IDRQHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIG 506

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VDLSL 600
                      +++   I++ GL+K D L L  LT ++K+ D + Q   +      + L+ 
Sbjct: 507  PAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLAS 566

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 567  LPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMV 626

Query: 659  VVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
              Y  R++G+E      P         +  +L +T+GV ++QEQ M+IA   + ++  EA
Sbjct: 627  HPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEA 686

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LRRAM   +    +   +++ I G    G  +T A N F  +  F +YGF +SHAA++
Sbjct: 687  NQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASF 746

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  
Sbjct: 747  AHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNI 806

Query: 830  VG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +         +      I G        ++    + P+ ++ED   R+     +RR    
Sbjct: 807  LEETPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRLRL---DRRAFTL 862

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  A A       R   L ++  +            ++   +F     +   +    K  
Sbjct: 863  LADADAFGSLDIDRRAALWAVRRLP----------NDETLPLFRAAAASELAQEPRTKLP 912

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
               +S     +         GHPL   +  L   G+           G  +++A +V  +
Sbjct: 913  EMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVR 972

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG  + ++T  +         +P
Sbjct: 973  QRPGSAKG--VVFLTIEDETGIANIVIWP 999


>gi|258653321|ref|YP_003202477.1| error-prone DNA polymerase [Nakamurella multipartita DSM 44233]
 gi|258556546|gb|ACV79488.1| DNA polymerase III, alpha subunit [Nakamurella multipartita DSM
            44233]
          Length = 1092

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1036 (27%), Positives = 474/1036 (45%), Gaps = 64/1036 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS++S L+GA +   ++ +       A+AITD + L+  + F++ A  AG++ 
Sbjct: 54   PYAELHCHSAFSFLDGASTPEQLVAEAVRLGLEALAITDHDGLYGIVRFAEAAREAGLRT 113

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + G +L + + +      Q   P P    +++L    EGY RL   +SR  L    K   
Sbjct: 114  LYGAELSLGLPE-----PQLGVPDPVGEHLLVLARGQEGYHRLSTQISRAQLAGGAKGRP 168

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
               L  L +      ++LTG   G + RA   +    A + L      F  D + V L  
Sbjct: 169  VYDLDELADAAGGHWLILTGCRKGSVRRALQRHGPARAAEELRALMDRFGRDNVVVELTT 228

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
                 D      +  LA   +LP+VAT  + + +  +      + AV     + + D   
Sbjct: 229  SLAPTDDEDNDALAALAAELDLPIVATTAAHYATPAEGRIAAAMAAVRARRSLEEADPYL 288

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               P  +L++ +EM ++F+  P A+     I R CSF L++ AP LP +      D    
Sbjct: 289  PAGPGSHLRSGAEMAALFARYPAAVPTAAAIGRECSFDLRLLAPKLPPYDVPPGHD---- 344

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E + LR   +AG   R             D   +++ EL +IAR+ F GYFLIV D + +
Sbjct: 345  ENSHLRQLTLAGAARRYGS-----PDDRPDAYAQIEKELGIIARLDFPGYFLIVNDIVDF 399

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             ++++I +  GRGS A S   YAL IT +D +R+ LLFERFL P+R   PD D+D   DR
Sbjct: 400  CRRSDI-LCQGRGSAANSAVCYALGITAVDAVRYELLFERFLAPERDGPPDIDVDIESDR 458

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAH 485
            R+EVI+YV   YG ++ AQ+    + + + A+RD+ +AL     Q D   K +    P  
Sbjct: 459  REEVIQYVFATYGRDKAAQVANVNTYRPRMAVRDMAKALGHSPGQQDAYSKQLDGWVPLA 518

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                  I  D               +L ++ +++   RH S H+ G+VI DRP++ + P+
Sbjct: 519  GQDASGIPAD---------------VLALAHRIQDYPRHLSIHSGGMVICDRPVASVCPV 563

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                  +  V Q++       GL+KFD LGL  L+ L  ++D + +   +++D + +  +
Sbjct: 564  EWARMENRSVLQWDKDDCAAMGLVKFDLLGLGMLSALHYAVDLIREHEGLEIDFAQLDLE 623

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYN 662
            +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    +  Y 
Sbjct: 624  EPAVYEMLQRADSVGVFQVESRAQMATLPRLKPRTFYDLVVEVALIRPGPIQGNAVHPYI 683

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKI 721
             R+NG+E++   HP+++  L +T G+ ++QEQ+MQ+A  ++G+   EAD LRRAM  K+ 
Sbjct: 684  RRRNGQEEVTYDHPVMEKSLAKTLGIPLFQEQLMQLAVDVAGFDAGEADQLRRAMGAKRS 743

Query: 722  KEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            K +M+K K R   G  + +GI+  +A  I+E L  FA++GF +SHA ++A + + +AW+K
Sbjct: 744  KGKMEKLKARLYDGMRERHGITGPVADRIYERLLAFANFGFAESHALSFAALVFYSAWLK 803

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRI 835
             H+P  F AA +  +       +    DAR+  + I  P +N       +     G   +
Sbjct: 804  LHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVSIRRPDINASRAHADLEPGPDGRPAV 863

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  ++ +G   A  I+     + + SL++    V          E+L  AGALD   
Sbjct: 864  RLGLDEVRTIGDELAARIVARRPTEGYRSLDELTRTVTLTA---PQAEALATAGALDTLV 920

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R                      ++   +     G   D   L   S    +V    +
Sbjct: 921  GTRR----------HALWAAGAAAGDRAGTLAGSVVGL--DAPALPGMSDIELTV---AD 965

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +P +  +  L   G+K       T  G  + +A +V  +Q+  T  G  +
Sbjct: 966  IWATGISPQTYPTEFSRDQLDAWGVKTAAALKDTAHGTRVLVAGVVTHRQRPATASG--V 1023

Query: 1016 GWVTFSEPAKEYEANF 1031
             ++   +         
Sbjct: 1024 IFINLEDETGMLNVIC 1039


>gi|329895034|ref|ZP_08270799.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC3088]
 gi|328922530|gb|EGG29867.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC3088]
          Length = 1094

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/1038 (26%), Positives = 450/1038 (43%), Gaps = 78/1038 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L   S+YS L GA   + ++ + A     AIAITD  +L   ++   +A  + I+ 
Sbjct: 67   PYCELVCTSNYSFLRGASHPDELVARAAELGYGAIAITDECSLAGVVKAHVQAEISDIKL 126

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +                        +V L      Y  L  L+SR       K   
Sbjct: 127  IVGSEFLTVEGVR----------------LVALAPNRNAYSELSGLISRARRR-ANKGQY 169

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + L  L       LI         I      N S VA     T  K F  RL++  +  
Sbjct: 170  EVHLPDLIFHLKHCLI---------IWLPEQLNRSHVAFGH--TLSKRFKTRLWLGFKHL 218

Query: 190  RGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               + R +      L+    +P+VA  +    S +    HD L A+ H T + +    R+
Sbjct: 219  LAGETRQQFQTFEALSQELNIPMVACGDVRMHSPKRKALHDALTALYHRTQIDRLGTLRL 278

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 +L+    + +++ D  E ++ +  IA +C F L+      P+ I        +  
Sbjct: 279  GNSQQHLRPLELIKALYPD--ELIQQSQTIADQCQFSLRELRYEYPQEIVP----TDQTA 332

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR +   G   R   G           ++R++ EL +IA++++  YFL V D + +A
Sbjct: 333  SEYLRQEVKQGCRQRWPNGT------PDAIQKRIEKELELIAQLRYEHYFLTVYDIVNFA 386

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K   I +  GRGS A SV  Y L IT++ P    LLFERF++ +R   PD D+DF  +RR
Sbjct: 387  KSRRI-LCQGRGSAANSVVCYCLGITEVSPEHIDLLFERFISQERDEPPDIDVDFEHERR 445

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KY   R A   T  + + ++A+RD+GRA+    S +++L + I        
Sbjct: 446  EEVIQYIYQKYSRRRAALAATVITYRTRSAIRDIGRAMGFDASFIEQLSQSIAWWDRRAE 505

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              Q   +    +  + ++        +  ++ G  RH S H  G VI   P+SQLVP+  
Sbjct: 506  LQQRFNE----QGIKHSEQQAMHFQHLVSQILGFPRHLSQHVGGFVISAGPISQLVPVEN 561

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606
                D  V Q++   IE  GL+K D L L  L+ ++KSLD +A     +  L  IP +D 
Sbjct: 562  ASMPDRTVIQWDKDDIEALGLLKVDVLALGMLSAIRKSLDLIANYQPTIAHLREIPKEDA 621

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664
             TY +L T  +LG+FQ+ES      L  ++P C  D++  +++ RPGPI    +  Y  R
Sbjct: 622  STYRMLQTGDSLGVFQIESRAQMAMLPRLKPACFYDLVIEIAIVRPGPIQGEMVHPYLRR 681

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723
            + G E +   +  I  +L+ T GV I+QEQV+++A + +G+S  EAD LRRA+    K  
Sbjct: 682  REGLEPVSFPNDAIKGVLQRTLGVPIFQEQVIRLAMVAAGFSGGEADQLRRAITNWGKNS 741

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            ++   + + I G   NG  +  A  +F+ +  F  YGF +SH+A++A+++Y +AW+K H+
Sbjct: 742  KLLTFEHKLIQGMLANGYDEAFANRLFDQIKGFGGYGFPESHSASFALLAYASAWLKRHH 801

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP-------CVDFKVGDNRIY 836
            P  F    +  +        +  QDA++  I I P  +N           D++   N I 
Sbjct: 802  PGAFYVGILNSQPMGFYSPSQLIQDAQRHGIHIEPLDINQSLWDHQLVATDYRQQPNTIR 861

Query: 837  YSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L  +KG+   TA  I++      PF +L +   R        + L S   A AL    
Sbjct: 862  LGLRLVKGLSEATATRIVDSRRQHGPFKALNELRQRAAIPANELQALSS---ADALSTIS 918

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R Q    +  +             +H  + A      ++          + +     +
Sbjct: 919  GHRHQTQWQVLGL------------PEHRPLLARLDN--AENYQSPNIEPPSVAENVLAD 964

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
             +  G     HPL + +          + E +A      +R+A +V  KQ+  T  G  +
Sbjct: 965  YQSTGLTLRDHPLSLLRKEWPFKRCSTHRELLAASSQRFVRIAGLVTCKQRPGTASG--V 1022

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++T  +    +    +P
Sbjct: 1023 IFLTLEDETGNHNVVVWP 1040


>gi|256368535|ref|YP_003106041.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915]
 gi|255998693|gb|ACU47092.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915]
          Length = 1077

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/1049 (24%), Positives = 437/1049 (41%), Gaps = 77/1049 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  +   S++S L GA     ++++  A     I I D N L   +    +        
Sbjct: 3    PYFEMAAASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQ-------- 54

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                  DI  +   ++    +  F    P +V+       Y +L  L++        K  
Sbjct: 55   ----WKDIRKESGFRLFIGCRLSFIDGTPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGE 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
              +  + L     +  I +        D A           RL    +     +++ L  
Sbjct: 111  CHLEWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTM 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R  
Sbjct: 161  PHQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLL 220

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK   EMV +F D PEA+  T +     +F L       P           K 
Sbjct: 221  EKNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KT 276

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L +    G         I         +  ++ EL +IAR+++  YFL V D +  
Sbjct: 277  AQQHLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTH 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +R
Sbjct: 332  AREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHER 390

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       
Sbjct: 391  REEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGG 450

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+ 
Sbjct: 451  IDRQHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIG 506

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VDLSL 600
                      +++   I++ GL+K D L L  LT ++K+ D + Q   +      + L+ 
Sbjct: 507  PAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLAS 566

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 567  LPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMV 626

Query: 659  VVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
              Y  R++G+E      P         +  +L +T+GV ++QEQ M+IA   + ++  EA
Sbjct: 627  HPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEA 686

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LRRAM   +    +   +++ I G    G  +T A N F  +  F +YGF +SHAA++
Sbjct: 687  NQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQINGFGEYGFPESHAASF 746

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  
Sbjct: 747  AHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNI 806

Query: 830  VG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +         +      I G        ++    + P+ ++ED   R+     +RR    
Sbjct: 807  LEETPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRLRL---DRRAFTL 862

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  A A       R   L ++  +            ++   +F     +   +    K  
Sbjct: 863  LADADAFGSLDIDRRAALWAVRRLP----------NDETLPLFRAAAASELAQEPRTKLP 912

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
               +S     +         GHPL   +  L   G+           G  +++A +V  +
Sbjct: 913  EMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVR 972

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG  + ++T  +         +P
Sbjct: 973  QRPGSAKG--VVFLTIEDETGIANIVIWP 999


>gi|260169652|ref|ZP_05756463.1| error-prone DNA polymerase [Brucella sp. F5/99]
 gi|261759184|ref|ZP_06002893.1| error-prone DNA polymerase [Brucella sp. F5/99]
 gi|261739168|gb|EEY27164.1| error-prone DNA polymerase [Brucella sp. F5/99]
          Length = 1077

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/1049 (24%), Positives = 437/1049 (41%), Gaps = 77/1049 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  +   S++S L GA     ++++  A     I I D N L   +    +        
Sbjct: 3    PYFEMAAASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQ-------- 54

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                  DI  +   ++    +  F    P +V+       Y +L  L++        K  
Sbjct: 55   ----WKDIRKESGFRLFIGCRLSFIDGTPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGE 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
              +  + L     +  I +        D A           RL    +     +++ L  
Sbjct: 111  CHLEWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTM 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R  
Sbjct: 161  PHQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLL 220

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK   EMV +F D PEA+  T +     +F L       P           K 
Sbjct: 221  EKNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KT 276

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L +    G         I         +  ++ EL +IAR+++  YFL V D +  
Sbjct: 277  AQQHLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTH 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +R
Sbjct: 332  AREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHER 390

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       
Sbjct: 391  REEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGG 450

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+ 
Sbjct: 451  IDRQHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIG 506

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VDLSL 600
                      +++   I++ GL+K D L L  LT ++K+ D + Q   +      + L+ 
Sbjct: 507  PAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLAS 566

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 567  LPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMV 626

Query: 659  VVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
              Y  R++G+E      P         +  +L +T+GV ++QEQ M+IA   + ++  EA
Sbjct: 627  HPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEA 686

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LRRAM   +    +   +++ I G    G  +T A N F  +  F +YGF +SHAA++
Sbjct: 687  NQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASF 746

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  
Sbjct: 747  AHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNI 806

Query: 830  VG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +         +      I G        ++    + P+ ++ED   R+     +RR    
Sbjct: 807  LEETPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRLRL---DRRAFTL 862

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  A A       R   L ++  +            ++   +F     +   +    K  
Sbjct: 863  LADADAFGSLDIDRRAALWAVRRLP----------NDETLPLFRAAAASELAQEPRTKLP 912

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
               +S     +         GHPL   +  L   G+           G  +++A +V  +
Sbjct: 913  EMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQKGADGRRMKVAGVVTVR 972

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG  + ++T  +         +P
Sbjct: 973  QRPGSAKG--VVFLTIEDETGIANIVIWP 999


>gi|16119907|ref|NP_396612.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58]
 gi|71151853|sp|Q8U642|DNE23_AGRT5 RecName: Full=Error-prone DNA polymerase 3
 gi|15163575|gb|AAK91053.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58]
          Length = 1087

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/1047 (26%), Positives = 466/1047 (44%), Gaps = 88/1047 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  LQV + +S L GA S   + +   A    A+ + D N+L   +   + + A G++ 
Sbjct: 2    SYAELQVTTHFSFLRGASSAQELFETAKALGIEALGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC                +       S+++  +    Y RL  L++    L + +   
Sbjct: 62   VIGC----------------RLDLADGMSVLVYPTDRAAYSRLTRLIT----LGKSRGGK 101

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
              CL     +  + ++  T G  G I      +   +   +L    +LFGDR YV+L  R
Sbjct: 102  NNCL-----LHWDDVVAYTDGMIG-ILVPDLPD--DLCGIQLRKMAELFGDRAYVSLCLR 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
             R  D+ R  ++  LA   ++  V TN+ LF      +  D++  +   T + +      
Sbjct: 154  RRQNDQLRLHEISNLATRFKVRTVVTNDVLFHEPGRRQLQDIVTCIRTRTTIDEVGFERE 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK   EM  +F    +AL  T+EI RRC+F L+      P    +E     K+ 
Sbjct: 214  RHADRYLKPPEEMERLFPRYRQALARTMEIVRRCTFSLEELTYQYP----EEAIVPGKDA 269

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L +     +  R  +G         D  + +  EL++I  MK++ YFL V   +++A
Sbjct: 270  QASLEHYVWQCVPDRYPEGL------PPDVLKVVRHELDLIRTMKYAPYFLTVFSIVRYA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +RR
Sbjct: 324  RSQGI-LCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+++   Y  E+ A   T    +A+ A+RDVG+AL +P   +  L   +        
Sbjct: 383  EEVIQWIYRTYTREKAALCATVTRYRARGAIRDVGKALGLPEDVIKALSSGMW------- 435

Query: 488  SLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            S      D   RE  L +P   RL   L+++Q+L G  RH   H  G V+    L  LVP
Sbjct: 436  SWSEEVCDRNVRELNL-NPDDRRLVLTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVP 494

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPF 603
            +      D  + +++   +E    +K D L L  LT + K+ D + +   +  DLS I  
Sbjct: 495  IEPATMKDRQIIEWDKDDVEALKFMKVDILALGMLTCMAKAFDLIREHKDRDLDLSKIEQ 554

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y
Sbjct: 555  EDSVTYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPY 614

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R+ GKE +    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M   K
Sbjct: 615  LRRREGKEAVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFK 674

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                + + K++ +SG  +NG +   A   F  L  F  YGF +SHAA++A+I+Y ++++K
Sbjct: 675  FTGGVSQFKDKLVSGMVRNGYAPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASSYIK 734

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNR 834
             HYP  F AA +  +        +   DAR   +++ P  +N    D  +        + 
Sbjct: 735  CHYPEAFCAALINSQPMGFYAPAQIVGDARAHGVEVRPVCINRSRWDCTLERIGNSDRHA 794

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +      +KG+    A  ++ A  +  F S++D   R     +    L  L  A A    
Sbjct: 795  VRLGFRQVKGLAVADAARVVAARMNNAFVSVDDMWRR---SGVPSEALVQLAKADAF--- 848

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--------SDKITLEKFSVE 946
                   L SL   ++ A W  K   ++   +FA                 + L + +  
Sbjct: 849  -------LPSLKLERRDALWAIKALRDEPLPLFAAAAEREMAAIAEQQEPGVALRQMTDG 901

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            ++ +    +    G     HP+   +  L    I    E++ +  G  +  A +V+ +Q+
Sbjct: 902  HNVI---EDYSHTGLTLRQHPIAFLRKDLSVRNIITCAEAMNSRDGRWVYTAGLVLVRQK 958

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + KG  + ++T  +         +P
Sbjct: 959  PGSAKG--VMFITIEDETGPANLVVWP 983


>gi|331699065|ref|YP_004335304.1| Error-prone DNA polymerase [Pseudonocardia dioxanivorans CB1190]
 gi|326953754|gb|AEA27451.1| Error-prone DNA polymerase [Pseudonocardia dioxanivorans CB1190]
          Length = 1142

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/1071 (26%), Positives = 462/1071 (43%), Gaps = 94/1071 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS++S L+GA     ++++ A     A+A+TD + ++  + F++ A   G+  
Sbjct: 63   PYAELHCHSNFSFLDGASHPEELVEQAARLGLDALALTDHDGMYGVVRFAEAAAELGVAT 122

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G +L + +        Q   P P    ++LL    +GY+ L  ++S   L  + K   
Sbjct: 123  IFGAELSLGLS-----APQNGVPDPEGSHLLLLARDPDGYRALCRVISAAQLRGREKGRP 177

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
               +  + E     ++ LTG   G + +A        AE+ L    + F  + + V L  
Sbjct: 178  VYRVDEIVEQTAGHVVALTGCRKGAVRQALAAGGPVAAEEALGWLVERFGREGVAVELTH 237

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
                 D  R   +  LA    LP VAT  + +     Y     + AV     + + D   
Sbjct: 238  QALPGDTERNDALAALAARAGLPTVATTGAHYAEPGRYPLAAAMAAVRSRRSLDEADGWL 297

Query: 247  RVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                   L++ +EM + F D  P A+     + R C+F + + AP LP F   +  D   
Sbjct: 298  PPAGTARLRSGAEMAARFEDRYPGAVARAAALGRECAFTIDLVAPDLPPFEVPDGRD--- 354

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E + L  +   G   R    A        +  + ++ E+ +I   KF GYFLIV D ++
Sbjct: 355  -EASLLWERVRKGAMCRYGSQA-----ENPEAAETIEREMEIIVAKKFPGYFLIVHDIVE 408

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            + ++N+I +  GRGS A S   +AL IT++D +   LLFERFL+P R   PD D+D    
Sbjct: 409  FCRRNDI-LCQGRGSAANSAVCFALGITNVDAVACGLLFERFLSPARDGYPDIDLDIESG 467

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV  +YG    AQ+    + + ++A+RD+ RAL     Q D   K I      
Sbjct: 468  RREEVIQYVYGRYGRGCAAQVANVITYRPRSAVRDMARALGFSPGQQDAWSKQIERWHGI 527

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              S     D     E          +L ++++L G  RH   H+ G+VI DRP+S++VP+
Sbjct: 528  GGS-----DGPPVPEGM-----PPAVLALAEQLLGFPRHLGIHSGGMVICDRPVSEVVPV 577

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                  +  V Q++      AGL+KFD LGL  LT L   +D +A    ++V+L  +   
Sbjct: 578  EWARMEERTVVQWDKDDCAAAGLVKFDLLGLGMLTALHTMIDLVAAHHGLRVELYELQPT 637

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYN 662
            D E Y +L    ++G+FQ+ES      L  ++P+   D++  V+L RPGPI       Y 
Sbjct: 638  DPEVYAMLQRADSVGVFQVESRAQMATLPRLKPERFYDLVVEVALIRPGPIQGGSVHPYI 697

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKI 721
             R+   E+    HPL+   L +T GV ++QEQ+MQ+A  ++G+S ++AD LRRAM  K+ 
Sbjct: 698  RRRRDLEEWHHDHPLLAGALDKTLGVPLFQEQLMQVAVDVAGFSAADADELRRAMGSKRS 757

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E+M++ + RF  G + NGI+  +A  IF  +  FA++GF +SH+ ++A + YQ+AW K 
Sbjct: 758  TEKMERLRGRFYDGMAANGITGEVAEGIFAKMLAFANFGFPESHSISFASLVYQSAWFKR 817

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-------R 834
            +YP  F AA +  +       +    DAR+  + +  P V     +  +  +        
Sbjct: 818  YYPAAFCAALLNSQPMGFYSPQSLVADARRHGVLVRGPDVCEGGAEATLEPDPRSEGGVA 877

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I   L  ++ VG   A  I         +  L D   RV          E+L  AGA  C
Sbjct: 878  IRLGLGEVRSVGIEKAEEIEAERVRGGRYRDLADLARRVRLTA---PQAEALATAGAFGC 934

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG  R   L +   +             + E++     G  +                  
Sbjct: 935  FGIDRRSALWAAGVV----------AGVRPEHLPGAAVGLEA-----PALPGMTDVELTV 979

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR----------GNN--------- 994
            ++    G     HPL   +P L ++G           R          G           
Sbjct: 980  SDVWATGVSPDSHPLQHLRPRLDELGAVPVARLDEVGRRAMTGTAHRMGRRGPQEVDALV 1039

Query: 995  --------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                          + +  +V  +Q+  T  G  + ++   +         
Sbjct: 1040 EALDPYDPDVRPPRVLVGGLVTHRQRPATAGG--VTFINLEDETGMLNVTC 1088


>gi|254696496|ref|ZP_05158324.1| error-prone DNA polymerase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260760873|ref|ZP_05873216.1| error-prone DNA polymerase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260671305|gb|EEX58126.1| error-prone DNA polymerase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 1077

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/1049 (23%), Positives = 436/1049 (41%), Gaps = 77/1049 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  +   S++S L GA     ++++  A     I I D N L   +    +        
Sbjct: 3    PYFEMAAASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQ-------- 54

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                  +I  +   ++    +  F    P +V+       Y +L  L++        K  
Sbjct: 55   ----WKNIRKESGFRLFIGCRLSFIDGTPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGE 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
              +  + L     +  I +        D A           RL    +     +++ L  
Sbjct: 111  CHLEWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTM 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R  
Sbjct: 161  PHQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLL 220

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK   EMV +F D PEA+  T +     +F L       P           K 
Sbjct: 221  EKNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KT 276

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L +    G         I         +  ++ EL +IAR+++  YFL V D +  
Sbjct: 277  AQQHLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTH 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +R
Sbjct: 332  AREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHER 390

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       
Sbjct: 391  REEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGG 450

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+ 
Sbjct: 451  IDRQHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIG 506

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VDLSL 600
                      +++   I++ GL+K D L L  LT ++K+ D + Q   +      + L+ 
Sbjct: 507  PAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLAS 566

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P  D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 567  LPRKDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMV 626

Query: 659  VVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
              Y  R++G+E      P         +  +L +T+GV ++QEQ M+IA   + ++  EA
Sbjct: 627  HPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEA 686

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LRRAM   +    +   +++ I G    G  +T A N F  +  F +YGF +SHAA++
Sbjct: 687  NQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASF 746

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  
Sbjct: 747  AHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNI 806

Query: 830  VG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +         +      I G        ++    + P+ ++ED   R+     +RR    
Sbjct: 807  LEETPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRLRL---DRRAFTL 862

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  A A       R   L ++  +            ++   +F     +   +    K  
Sbjct: 863  LADADAFGSLDIDRRAALWAVRRLP----------NDETLPLFRAAAASELAQEPRTKLP 912

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
               +S     +         GHPL   +  L   G+           G  +++A +V  +
Sbjct: 913  EMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVR 972

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG  + ++T  +         +P
Sbjct: 973  QRPGSAKG--VVFLTIEDETGIANIVIWP 999


>gi|225626616|ref|ZP_03784655.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo]
 gi|225618273|gb|EEH15316.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo]
          Length = 1078

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/1049 (24%), Positives = 437/1049 (41%), Gaps = 77/1049 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  +   S++S L GA     ++++  A     I I D N L   +    +        
Sbjct: 4    PYFEMAAASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQ-------- 55

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                  DI  +   ++    +  F    P +V+       Y +L  L++        K  
Sbjct: 56   ----WKDIRKESGFRLFIGCRLSFIDGTPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGE 111

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
              +  + L     +  I +        D A           RL    +     +++ L  
Sbjct: 112  CHLEWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTM 161

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R  
Sbjct: 162  PHQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLL 221

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK   EMV +F D PEA+  T +     +F L       P           K 
Sbjct: 222  EKNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KT 277

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L +    G         I         +  ++ EL +IAR+++  YFL V D +  
Sbjct: 278  AQQHLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTH 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +R
Sbjct: 333  AREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHER 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       
Sbjct: 392  REEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGG 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+ 
Sbjct: 452  IDRQHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIG 507

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VDLSL 600
                      +++   I++ GL+K D L L  LT ++K+ D + Q   +      + L+ 
Sbjct: 508  PAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLAS 567

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 568  LPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMV 627

Query: 659  VVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
              Y  R++G+E      P         +  +L +T+GV ++QEQ M+IA   + ++  EA
Sbjct: 628  HPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEA 687

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LRRAM   +    +   +++ I G    G  +T A N F  +  F +YGF +SHAA++
Sbjct: 688  NQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASF 747

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  
Sbjct: 748  AHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNI 807

Query: 830  VG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +         +      I G        ++    + P+ ++ED   R+     +RR    
Sbjct: 808  LEETPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRLRL---DRRAFTL 863

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  A A       R   L ++  +            ++   +F     +   +    K  
Sbjct: 864  LADADAFGSLDIDRRAALWAVRRLP----------NDETLPLFRAAAASELAQEPRTKLP 913

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
               +S     +         GHPL   +  L   G+           G  +++A +V  +
Sbjct: 914  EMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQKGADGRRMKVAGVVTVR 973

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG  + ++T  +         +P
Sbjct: 974  QRPGSAKG--VVFLTIEDETGIANIVIWP 1000


>gi|254282771|ref|ZP_04957739.1| DNA polymerase III, alpha subunit subfamily, putative [gamma
            proteobacterium NOR51-B]
 gi|219678974|gb|EED35323.1| DNA polymerase III, alpha subunit subfamily, putative [gamma
            proteobacterium NOR51-B]
          Length = 1028

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/1036 (26%), Positives = 457/1036 (44%), Gaps = 75/1036 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L   S++S L GA     ++++ A     A+AITD  +L  A++    A A GIQ 
Sbjct: 2    SYAELHCLSNFSFLRGASHPAELVERAAHCGYSALAITDECSLGGAVKAHVAAKACGIQL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G + +++                    +V L      Y  L  L+SR        +  
Sbjct: 62   IVGSEFNLNEGIR----------------LVALAPDRAAYAELSGLISRSRRRSAKGEYS 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
                  +  +    +I             +     +            F  RL++ + R 
Sbjct: 106  TSLRDVIFHLKRCLII-------------WLPTDDEEQSAYGKQLSSRFSGRLWIGVSRL 152

Query: 190  RGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
             G D  R  +   Q A    LP+VA  +           HDVL A+ ++T V Q   R  
Sbjct: 153  LGNDEIRRFRARYQFARELALPMVACGDVQMHCAARKPLHDVLTALRYNTSVQQLGQRRL 212

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V    +L++   ++ ++   P   + T+ IA RC F L       P    +E     +  
Sbjct: 213  VNSQQHLRSLDRLLPLYP--PSLTDETLAIAARCHFSLDELRYEYP----EEVIPAGETA 266

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR +   G   R   G         D   R+  EL++I  + +  YFL V D +++A
Sbjct: 267  NSYLRRQVALGAHARWPDGV------PGDIEDRIHRELDLITELNYEYYFLTVYDIVRFA 320

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++ +I +  GRGS A SV  Y L IT++ P + SLLFERF++ +R   PD D+DF  +RR
Sbjct: 321  RERDI-LCQGRGSAANSVVCYCLAITEVSPEQISLLFERFISRERDEPPDIDVDFEHERR 379

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KY   R A   T+ + ++++A+RD+G+AL +    VD L K +        
Sbjct: 380  EEVIQYIYQKYSRRRAALAATYITYRSRSAVRDIGKALGLDPIFVDDLAKSLAWWNRERE 439

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                 A        R A       L + Q++ G  RH S H  G VI   PLS LVP+  
Sbjct: 440  LSSRFAKHGITAAGRQA----HLFLNLVQEILGFPRHLSQHVGGFVISRGPLSHLVPIEN 495

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDH 606
                   V Q++ + IE  GL+K D L L  L+ ++KSLD+L Q       +  IP +D 
Sbjct: 496  AAMDSRTVIQWDKEDIESLGLLKVDILALGMLSAIRKSLDWLHQYHPSIRSIQDIPKEDQ 555

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNR 664
             TY +L    +LG+FQ+ES      L  ++P C  D++  +++ RPGPI  D +  Y  R
Sbjct: 556  ATYQMLQRGDSLGVFQIESRAQMSMLPRLKPACFYDLVIEIAIVRPGPIQGDMVHPYLRR 615

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE- 723
            +NG E I      I  +L+ T GV I+QEQV+++A + +G++  EAD LRRA+    ++ 
Sbjct: 616  RNGLEPISYPSEDIRSVLESTLGVPIFQEQVIRLAMVAAGFTGGEADALRRAITNWGRDS 675

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            ++   +++   G    G S   A  +F+ +  F  YGF +SH+A++A+++Y +AW++ H+
Sbjct: 676  KLLTFEQKLTEGMISRGYSPQFARQLFDQIKGFGGYGFPESHSASFALLAYVSAWLRRHH 735

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI------YY 837
            P  F    +  +        +  Q AR+  + ++P ++N    D ++             
Sbjct: 736  PAAFYLGLLNSQPMGFYTPSQLIQSARRQGVVVLPIAINHSQWDHQLLPPGNGQAPPLRL 795

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  +KG+    A  I+     + F  + D   R      ++R +E+L  A AL     +
Sbjct: 796  GLRLVKGLSQAGAERIVAQREQRLFAHVGDLRRRARL---DKRDMEALANADALQNLSGN 852

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R Q    +  ++  +Q + +  +            T+ D I L   S   + +    +  
Sbjct: 853  RHQSQWQIMALEPDSQLLHQTTST---------TETWDDDIHLPAPSTVENVL---ADYN 900

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G     HPL + +P       +   E  +      +R+A +V  +Q+  T  G  + +
Sbjct: 901  ATGLTLRSHPLALLRPQSPFDRCRRQSELASLGNHRFVRIAGIVTCRQRPGTASG--VIF 958

Query: 1018 VTFSEPAKEYEANFFP 1033
            +T  +    +    +P
Sbjct: 959  LTLEDETGNHNVVVWP 974


>gi|115380095|ref|ZP_01467134.1| error-prone DNA polymerase [Stigmatella aurantiaca DW4/3-1]
 gi|115362901|gb|EAU62097.1| error-prone DNA polymerase [Stigmatella aurantiaca DW4/3-1]
          Length = 984

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/1008 (27%), Positives = 458/1008 (45%), Gaps = 75/1008 (7%)

Query: 33   LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
            +   A    PA+A+TD + L+  ++    A   G++ I+G +L +               
Sbjct: 1    MATAARLGLPALALTDGDGLYGVVKAHLAAREHGLKLILGTELTLTEG------------ 48

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                P +V+    A GY  +  LVS   +    K    +    + E  +EGLI L    +
Sbjct: 49   ----PPVVVYAMDAGGYANMCRLVSASRMA-HPKGETGLPWREVAE-RSEGLIALLPHPA 102

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPL 211
                            +++    + F  R +V L R     D  RE++   LA    +PL
Sbjct: 103  P--------------IEQVGGLAEAFPGRFHVGLCRTLSAGDGPREARAEALARELGVPL 148

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEA 270
             A N+            DVL A+ H T V +   R     +  LK+ +EM  +F D PEA
Sbjct: 149  CAHNDVHVHHRRRQPLQDVLTAIRHKTTVDKAGTRLLPNAERTLKSPAEMARLFRDRPEA 208

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
            +E T+EIA+RC   L            +E           LR     GL VR   G    
Sbjct: 209  IERTLEIAQRCHATLDDLRY----HFSEEDLPPGLTAMGHLRQLTEEGLGVRYPAGV--- 261

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                 + R++++ E+ +I  + F GYFL + D +++A+   I +  GRGS A SV  YAL
Sbjct: 262  ---PPEVRKQVEHEMRLIEALDFPGYFLALWDIVRFARSRGI-LCQGRGSAANSVVCYAL 317

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             +T IDP+R  LLFERFL+ +R   PD D+DF  +RR+EV++YV  K+G  R   +  F 
Sbjct: 318  QLTAIDPVRMGLLFERFLSMERKEPPDIDVDFEHERREEVLQYVYEKHGRHRAGMVCEFI 377

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
              + + ALR+VG++L +   QVDRL K +       V+ + + +          D  V +
Sbjct: 378  CYRGRLALREVGKSLGLSLDQVDRLSK-VAAASGFEVTPEVLVE----AGLSAFDSRVRQ 432

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
             L +++++EG  RH S H  G VI   PL  L+P+         V Q+        G++K
Sbjct: 433  TLTLAREMEGFPRHVSIHVGGFVITREPLVDLIPVENAAMKGRTVIQWEKDDTNALGVLK 492

Query: 571  FDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             D L L  LT + K L  + +    ++ L+ IP +D + Y +L    T+G+FQ+ES    
Sbjct: 493  VDLLALGMLTAVSKCLALIREHFGRELSLATIPPEDPKVYDMLCEADTVGVFQIESRAQM 552

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
              L  ++P    D++  ++L RPGPI  + +  Y  R+NG+E      P +  +L++T G
Sbjct: 553  NMLPRLKPRTFYDLVIEIALIRPGPIVGNMVHPYLRRRNGEEVPTYPTPDVQAILEKTLG 612

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE-MDKQKERFISGASKNGISKTIA 746
            V ++QEQ M++A + +G++  EAD LRRA+G K  E+ ++  + RF+ G  K G      
Sbjct: 613  VPLFQEQAMKLAMVAAGFTAGEADGLRRALGHKRAEQLLEPYRMRFVEGGRKRGYPAAYM 672

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +F     FA YGF +SH+A++A+I+Y ++W+K HYP  F  A +  +           
Sbjct: 673  EELFAQFRGFAHYGFPESHSASFALIAYASSWLKCHYPQAFTTALLNSQPMGFYAPHTLV 732

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             DAR+  +++ P  V     D  + +   +   L  ++G+G    + +  A A   F  L
Sbjct: 733  ADARRHGVEVRPVDVRHSGWDCTLEEGGALRLGLRMVRGLGEAAGKRVAAARAGG-FSCL 791

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             D   R    ++ R  L  L  AGAL     SR Q L  +  +               ++
Sbjct: 792  GDVARRT---RIPRHELTRLALAGALASLCGSRRQALWEIQAL----------GPLDADD 838

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            +F       + ++ L    V   + R   +   +G     HPL++ +P LR +G    E 
Sbjct: 839  LFFGMSMDGT-QVELPPMGV---AERVTADYETVGLSLEKHPLELLRPTLRTLGAVSAEG 894

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G  + +  M++ +Q+  T +G  + +++  +          P
Sbjct: 895  LQRVSSGRRVAVGGMLICRQRPPTARG--MCFLSLEDETGIANLVVPP 940


>gi|222108967|ref|YP_002551233.1| DNA polymerase III subunit alpha [Agrobacterium radiobacter K84]
 gi|221727889|gb|ACM30939.1| DNA polymerase III subunit alpha [Agrobacterium radiobacter K84]
          Length = 1087

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/1047 (25%), Positives = 458/1047 (43%), Gaps = 88/1047 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  LQV + +S L GA S   + +   A     + + D N+L   +   + + A G++ 
Sbjct: 2    SYAELQVTTHFSFLRGASSAQELFETAKALGIEVLGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC                +       S+++  +    Y RL  L++       GK + 
Sbjct: 62   VVGC----------------RLDLADGMSVLVYPTDRAAYSRLTRLITLGKSRG-GKNNC 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
             +    +       + +L                      +L    ++FGDR YV+L  R
Sbjct: 105  ILHWDDVVAYNDGMIGILVPDLP-----------DDTCGIQLRKMAEVFGDRAYVSLCLR 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
             R  D+ R  ++  LA   ++  V TN+ LF      +  D++  +   T + +      
Sbjct: 154  RRQNDQLRLHEISNLAARFKVRPVVTNDVLFHEPGRRQLQDIVTCIRTRTTIDEVGFERE 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK   EM  +F    +AL  T+EI RRC+F L+      P    +E     K+ 
Sbjct: 214  RHADRYLKPPEEMQRLFPRYRQALARTMEIVRRCTFSLEELTYQYP----EEAIVPGKDA 269

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L +     +  R  +G         D  + +  EL++I  MK++ YFL V   +++A
Sbjct: 270  QASLEHYVWQCVPDRYPEGL------PPDVLKVVRHELDLIRTMKYAPYFLTVFSIVRYA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +RR
Sbjct: 324  RSQGI-LCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+++   Y  E+ A   T    +A+ A+RDVG+AL +P   +  L   +        
Sbjct: 383  EEVIQWIYRTYTREKAALCATVTRYRARGAIRDVGKALGLPEDVIKALSSGMW------- 435

Query: 488  SLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            S      D   RE  L +P   RL   L+++Q+L G  RH   H  G V+    L  LVP
Sbjct: 436  SWSEEVCDRNVRELNL-NPDDRRLVLTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVP 494

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPF 603
            +      D  + +++   +E    +K D L L  LT + K+ D + +   +  +LS I  
Sbjct: 495  IEPATMKDRQIIEWDKDDVEALKFMKVDILALGMLTCMAKAFDLIREHKDRDLNLSKIEQ 554

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y
Sbjct: 555  EDSATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPY 614

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R+ GKE +    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M   K
Sbjct: 615  LRRREGKEAVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFK 674

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                + + K++ +SG  +NG +   A   F  L  F  YGF +SHAA++A+I+Y ++++K
Sbjct: 675  FTGGVSQFKDKLVSGMVRNGYAPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASSYIK 734

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNR 834
             HYP  F AA +  +        +   DAR   +++ P  +N    D  +        + 
Sbjct: 735  CHYPEAFCAALINSQPMGFYAPAQIVGDARAHGVEVRPVCINRSRWDCTLERIGNSDRHA 794

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +      +KG+    A  ++ A  +  F S++D   R     +    L  L  A A    
Sbjct: 795  VRLGFRQVKGLAVADAARVVAARMNNAFVSVDDMWRRT---GVPSEALVQLAKADAF--- 848

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--------SDKITLEKFSVE 946
                   L SL   ++ A W  K   ++   +FA                ++ L + +  
Sbjct: 849  -------LPSLKLARRDALWAIKALRDQPLPLFAAAAEREMAAIAEQQEPEVALRQMTDG 901

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            ++ +    +    G     HP+   +  L    I    E++ +  G  +  A +V+ +Q+
Sbjct: 902  HNVI---EDYSHTGLTLRQHPIAFLRKDLSVRNIITCAEAMNSRDGRWVYTAGLVLVRQK 958

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +  G  + ++T  +         +P
Sbjct: 959  PGSANG--VMFITIEDETGPANLVVWP 983


>gi|320449185|ref|YP_004201281.1| DNA polymerase III subunit alpha [Thermus scotoductus SA-01]
 gi|320149354|gb|ADW20732.1| DNA polymerase III, subunit alpha [Thermus scotoductus SA-01]
          Length = 1646

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/835 (40%), Positives = 473/835 (56%), Gaps = 76/835 (9%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIA----ADQQPAIAITDTNNLFSALEFSQKACAAG 66
           F HL  H+ +SLL+GA  L+++L+ +      D  PA+A+TD  NLF A+EF +KA A G
Sbjct: 6   FAHLHQHTQFSLLDGAAKLSDLLEWVKTVSPED--PALAMTDHGNLFGAVEFYKKATAMG 63

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I+PIIG +  +  +       +GK        + LL    +GYQ L+ L SR YL     
Sbjct: 64  IKPIIGYEAYVAAESRFDR-KRGKGLDGGYFHLTLLARDFKGYQNLVRLASRAYLEG-FY 121

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
           +  RI    L+E   EGLI L+G     I +    +   +AE RL  +  +FGDR ++ +
Sbjct: 122 EKPRIDREILRE-HAEGLIALSGCLGAEIPQFILQDRLDLAEARLNEYLSIFGDRFFIEI 180

Query: 187 QRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           Q H   ++ + +QV+ + A  + L +VATN+  ++ +ED  AH+VL+A+   + +   +R
Sbjct: 181 QNHGLPEQRKVNQVLREFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKSTLDDPER 240

Query: 246 PRVTPDHYL-KNRSEMVSIFSDLP---EALENTVEIARRCSFILQVHA---PILPRFIEK 298
            R   D +  K   EM ++  +     E  +NTVEIAR C   L +       +PRF   
Sbjct: 241 WRFPCDEFYVKTPEEMRAMLPEEEWGDEPFDNTVEIARMCEVDLPIGDKMVYRIPRFPLP 300

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIA----------------------------- 329
           E     + E   LR     GL  R                                    
Sbjct: 301 EG----RTEAQYLRELTFKGLLSRYPDRITEGFYREVFRLLGKIPPHGDGEALAEALAQV 356

Query: 330 ------------------KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                             + + A+    R  +EL+VI RM F GYFLIV D+I WA++N 
Sbjct: 357 EGKAWEALLPKLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARRNG 416

Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
           I VGPGRGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF    RD VI
Sbjct: 417 ISVGPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVI 476

Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-Q 490
           +YV+ +YG E+VAQI TFGSL +KAAL+DV R   +P+ + + L KLIP     P  L +
Sbjct: 477 QYVRGRYGEEKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLAE 536

Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
           AI      R     DP V  ++E++ +LEGL RHAS HAAG+VI   PL+ LVP+ RD +
Sbjct: 537 AIELVPELRAEMEKDPRVREVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRD-Q 595

Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
              PVTQ++M  +E  GL+K DFLGL+TLT L ++   + + +GV++D   +P DD +T+
Sbjct: 596 EGRPVTQYDMGAVEALGLLKMDFLGLRTLTFLDEAKKIVKESKGVELDYDRLPLDDPKTF 655

Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
            LL    T G+FQLES GM   + G++P  +EDIIALVSLYRPGP+++I  Y  R +G+E
Sbjct: 656 ALLARGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHHGQE 715

Query: 670 KIVS---IHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +      H    + P+L+ET G+ +YQEQ+MQIA  ++GYSL EAD+LRRAMGKK  EE
Sbjct: 716 PVSYVEFPHAERYLRPILEETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKKVEE 775

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           M K +ERF+ GA + G+ +  A  +F++L  FA+YGFNK       V+ Y+T  +
Sbjct: 776 MQKHRERFVRGARERGVPEEEANRLFDMLEAFANYGFNKCLPGRARVLDYRTGKL 830



 Score =  293 bits (751), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 103/277 (37%), Positives = 150/277 (54%), Gaps = 12/277 (4%)

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
             + SHAAAY+++SYQTA++K HYPVEF+AA +T+E  + +K+ ++ +DAR   I+++PP 
Sbjct: 1237 VHNSHAAAYSLLSYQTAYVKAHYPVEFMAALLTVERHDSDKVAEYIRDARAMGIEVLPPD 1296

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNR 879
            +N    DFKV    I + L+A+K VG   A+ I+       PF SL DF  R+D K +N+
Sbjct: 1297 INRSGFDFKVVGEEILFGLSAVKNVGEGAAQAILAERERRGPFKSLGDFLKRLDEKVVNK 1356

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R LESL+ AGA D FG  R +LL SLD + ++A    +   +    +FA       ++  
Sbjct: 1357 RTLESLIKAGAFDAFG-DRARLLASLDPLLRWAAESRERERSGMMGLFAEV-----EEPP 1410

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NNI 995
            L +    +   R   E+  LG Y SGHP+  Y P LR++     EE    IRG      +
Sbjct: 1411 LAEALPLDEITRLRYEKEALGIYVSGHPVLRY-PGLREVASCTLEELPDFIRGLPPRPRV 1469

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             LA MV    +K TR G  +   T S+     E   F
Sbjct: 1470 LLAGMVEEVARKPTRSGGMMARFTLSDETGALEVVVF 1506


>gi|260469704|ref|ZP_05813865.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum
            WSM2075]
 gi|259028524|gb|EEW29839.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum
            WSM2075]
          Length = 1118

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/1060 (23%), Positives = 443/1060 (41%), Gaps = 91/1060 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +    + S++S L GA     ++         AI + D N +   +   Q+A    +  
Sbjct: 8    PYAEFGIQSNFSFLRGASKPEELVVAAKLLGFSAIGLADRNTVAGVVRAWQQAKVEKLSY 67

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
              GC+L                     P I+      +G+  L  ++++  L D+ ++  
Sbjct: 68   HPGCRLVFC---------------DGTPDILAYPRNRKGWGHLCRMLTQANLRDETEKGA 112

Query: 130  RIC-LSWLQEIGT-EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             +   S L E G    L +L    +G           + +   +   K  FG  L + + 
Sbjct: 113  TLLQRSDLLEWGDLMSLAVLPDPMAGA----------EDSLALIRQLKDRFGRALRLGVS 162

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
              + G DR+R  Q    A +  +PL+ATN+ L+ + E     DVL A+  +T  ++   +
Sbjct: 163  PDYAGNDRFRIEQAAAFAESAGIPLMATNDVLYHTAERRPLQDVLTAIRLNTPAAEVGLQ 222

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +LK   EM  +F   P+AL  T+  A   +F L       P    +     Q 
Sbjct: 223  LTANAERHLKPPMEMARLFRRHPQALTETLRFAEELTFSLSDLQYNYPDEPTESGLGPQA 282

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                EL   A  G   R   G  A         +R+  EL +I R+ ++ YFL V D ++
Sbjct: 283  ----ELERLAREGAARRYPAGVPA------SVIKRIGEELALIERLNYARYFLTVHDIVK 332

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S+  + + IT++ P +   LFERF++ +R   PD D+DF  +
Sbjct: 333  YARSQDI-LCQGRGSAANSIVCFCIGITEVGPDKIDTLFERFISEERNEPPDIDVDFEHE 391

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            +R+ VI+Y+  KY  +R A      S + ++ALR+V +A+ +       L   I      
Sbjct: 392  KRETVIQYIYEKYSSKRTALAAAVISYRGRSALREVSKAMGLSEDVRASLSGSIWGWSTS 451

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +    ++R       DP    ++E + ++ G  RH S H  G VI    L ++VP+
Sbjct: 452  ELGEK----EARAGGLDQTDPVSRHVMERANEIMGFPRHLSQHVGGFVITRDRLDEIVPI 507

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV--------KVD 597
             +    +  + +++   ++   ++K D L L  LT LQ++   L +              
Sbjct: 508  VKTAMDERKMVEWDKDDLDAVKILKVDILALGMLTCLQRAFTLLTEHYPKARDPYGQPYV 567

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            L+ +P +D + Y ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 568  LATLPPEDKQVYKMICRADTIGVFQIESRAQMSMLPRLRPQNFYDLVIEVAIVRPGPIQG 627

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D +  Y  R+ GKE+     P +  +L +T GV ++QEQ M+IA +  G+   EAD LRR
Sbjct: 628  DMVHPYLRRRQGKEEAEYPKPELKEILGKTLGVPLFQEQAMKIAIVAGGFRPGEADELRR 687

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AM   K    +   ++R I G    G +K  A   F+ +  F +YGF +SHAA++A++ Y
Sbjct: 688  AMATFKRTGTIGNYRQRMIDGMMGKGYTKDFAERCFKQIEGFGEYGFPESHAASFALLVY 747

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-- 832
             + W KT YP  F AA +  +     +  +  +DAR   + I    VN    D  + +  
Sbjct: 748  ASCWFKTFYPDVFCAAILNSQPMGFYQPAQLVRDARDHGVDIREVDVNFSTWDCTLEEAP 807

Query: 833  --------------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                                + +      IKG+        +    D  + S+ D   R 
Sbjct: 808  FDPARILPRHAEMRGVIETAHAVRLGFRQIKGLSKERMEQFVTRRGDG-YLSVRDVWLR- 865

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
                L+   +E L  A A    G  R   L ++  +       +     +   +F     
Sbjct: 866  --SGLDVDEIERLAQADAFRSLGLDRRDALWAVRAL-------DGKSAAEKLPLFDQPAL 916

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               +     K           ++ R LG     HP+   +  L + G+       +   G
Sbjct: 917  RLRELEPETKLPKMPLGEHVIHDYRSLGLSLKAHPVAFLRGRLDRAGVTPNANLSSVRDG 976

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + +A +V+ +Q+    KG+ I ++T  +        F+
Sbjct: 977  RRVSVAGLVLVRQRPG--KGNAI-FLTLEDDKAVANVIFW 1013


>gi|149377417|ref|ZP_01895161.1| DNA polymerase III, alpha subunit, putative [Marinobacter algicola
            DG893]
 gi|149358341|gb|EDM46819.1| DNA polymerase III, alpha subunit, putative [Marinobacter algicola
            DG893]
          Length = 1039

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/1032 (25%), Positives = 450/1032 (43%), Gaps = 61/1032 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L   S+++ L GA   + + ++       A+AITD  ++            + ++ 
Sbjct: 5    SYAELFCFSNFTFLTGASHPHELAERALELGYSALAITDACSVAGIPRAWAALRDSPVKL 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G   ++          +        P  +LL  T +GY +L +L++        K   
Sbjct: 65   ITGSWFEL----------EDAPAEAATPRFILLARTRKGYGQLCQLITTGR-RQAEKGQY 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    ++       + L    S  +        +  A       ++LF   L++   R 
Sbjct: 114  RLFFRDIETHSLNDCVCLWLPPSPTVV------DADQALACGEWLQRLFEPNLWIAAART 167

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +  + ++   LA     P+ AT      S E     DVL  + + T +        
Sbjct: 168  LESGEEQQLARARWLADHLRCPVAATGEVHMHSRERQPLQDVLTTLRNHTNLENAGHCLF 227

Query: 249  -TPDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + YL+    +  +F   PEA L  T+ IA +C+F         P  +          
Sbjct: 228  QNGERYLRPLPVLDRLF---PEAWLRETLVIAEQCTFEPGSLRYEYPPDLVP----GGTS 280

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+     G   R   G         + ++ +  EL++I+ MK+  YFL + D + +
Sbjct: 281  PAAYLKQLTHDGERRRYPSGT------PSNVQRLIRKELSLISEMKYEHYFLTIQDIVAF 334

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I +  GRGS A S   Y L IT+++P R  LLFERF++ DR   PD D+DF  +R
Sbjct: 335  ARSQGI-LCQGRGSAANSAVCYCLGITEVNPARVELLFERFISKDRGEPPDIDVDFEHER 393

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  +Y  ER A   T    + ++A+RDVG+AL    + V++L + I       
Sbjct: 394  REEVIQYIYRRYSRERAALAATVIRYRPRSAIRDVGKALGFDPAMVEQLLEGIDWRDKAS 453

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               Q I D    R  ++AD    +   +   L G  RH S H  G VI   PL++LVP+ 
Sbjct: 454  NWRQQILDKHLTRNPKVAD----QFFALVNTLLGFPRHLSQHVGGFVISAGPLAELVPVE 509

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                +D  V Q++ + +E  GL+K D L L  LT ++K+L+ +  ++G    +  IP +D
Sbjct: 510  NAAMADRTVIQWDKEDLESLGLMKVDVLALGMLTAIRKALELISEEKGTPFTMQDIPLED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
              TY +L    ++G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  Y  
Sbjct: 570  QATYAMLQKGDSIGVFQVESRAQINMLPRLKPEKYYDLVIEVAIVRPGPIQGDMVHPYLR 629

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            RK+G E +   +  +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM   K  
Sbjct: 630  RKHGLEPVDYPNDAVRNVLERTLGVPIFQEQVIKLAMVAAGFSAGEADQLRRAMAAWKSH 689

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             ++   +++ I+G  + G     A  ++  +  F  YGF +SHAA++A++ Y ++W+K H
Sbjct: 690  GDLTPFRDKLINGMLERGHDADFAERLYLQICGFGGYGFPESHAASFALLVYVSSWIKRH 749

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--RIYYSLA 840
            YP  F  A +  +        +  QDAR+ ++ ++PP+VN    +  +      +   L 
Sbjct: 750  YPAAFYCALLNSQPMGFYSPSQLVQDARRHDVTVLPPNVNHSQWNHTLESPNRHLRLGLR 809

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             I+G+  + A  +      + + S  +         LN+R +E L  A A+  F  +R Q
Sbjct: 810  LIQGLSASGAESLHNNRPAEGYRSTAEL---RHLAGLNQRDMELLAGANAMPAFTTNRHQ 866

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
                L   ++ A+            +FA E           +            +    G
Sbjct: 867  AYWQLLEHEQPAE------------LFAREAPAHYQPEHCFQLPEPTEGQNVLADYTSQG 914

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                 HPL + +           E+      G  +++A +V  +Q+  +  G  + +VT 
Sbjct: 915  LTLQRHPLALLREQGHLKFCLSAEQLKNIQPGRPVQVAGLVTGRQRPGSASG--VTFVTL 972

Query: 1021 SEPAKEYEANFF 1032
             +         +
Sbjct: 973  EDETGNVNVVVW 984


>gi|62289055|ref|YP_220848.1| error-prone DNA polymerase [Brucella abortus bv. 1 str. 9-941]
 gi|82698992|ref|YP_413566.1| error-prone DNA polymerase [Brucella melitensis biovar Abortus 2308]
 gi|254694867|ref|ZP_05156695.1| error-prone DNA polymerase [Brucella abortus bv. 3 str. Tulya]
 gi|254731409|ref|ZP_05189987.1| error-prone DNA polymerase [Brucella abortus bv. 4 str. 292]
 gi|260546348|ref|ZP_05822088.1| error-prone DNA polymerase [Brucella abortus NCTC 8038]
 gi|260759149|ref|ZP_05871497.1| error-prone DNA polymerase [Brucella abortus bv. 4 str. 292]
 gi|261215200|ref|ZP_05929481.1| error-prone DNA polymerase [Brucella abortus bv. 3 str. Tulya]
 gi|71151817|sp|Q57FU7|DNAE2_BRUAB RecName: Full=Error-prone DNA polymerase
 gi|62195187|gb|AAX73487.1| DnaE-1, DNA polymerase III, alpha subunit [Brucella abortus bv. 1
            str. 9-941]
 gi|82615093|emb|CAJ10022.1| Immunoglobulin/major histocompatibility complex:Phosphoesterase PHP,
            N-terminal:DNA polymerase III alpha subunit [Brucella
            melitensis biovar Abortus 2308]
 gi|260096455|gb|EEW80331.1| error-prone DNA polymerase [Brucella abortus NCTC 8038]
 gi|260669467|gb|EEX56407.1| error-prone DNA polymerase [Brucella abortus bv. 4 str. 292]
 gi|260916807|gb|EEX83668.1| error-prone DNA polymerase [Brucella abortus bv. 3 str. Tulya]
          Length = 1077

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/1049 (24%), Positives = 436/1049 (41%), Gaps = 77/1049 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  +   S++S L GA     ++++  A     I I D N L   +    +        
Sbjct: 3    PYFEMAAASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQ-------- 54

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                  DI  +   ++    +  F    P +V+       Y +L  L++        K  
Sbjct: 55   ----WKDIRKESGFRLFIGCRLSFIDGTPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGE 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
              +  + L     +  I +        D A           RL    +     +++ L  
Sbjct: 111  CHLEWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTM 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R  
Sbjct: 161  PHQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLL 220

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK   EMV +F D PEA+  T +     +F L       P           K 
Sbjct: 221  EKNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KT 276

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L +    G         I         +  ++ EL +IAR+++  YFL V D +  
Sbjct: 277  AQQHLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTH 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +R
Sbjct: 332  AREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHER 390

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       
Sbjct: 391  REEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGG 450

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+ 
Sbjct: 451  IDRQHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIG 506

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VDLSL 600
                      +++   I++ GL+K D L L  LT ++K+ D + Q   +      + L+ 
Sbjct: 507  PAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLAS 566

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P  D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 567  LPRKDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMV 626

Query: 659  VVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
              Y  R++G+E      P         +  +L +T+GV ++QEQ M+IA   + ++  EA
Sbjct: 627  HPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEA 686

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LRRAM   +    +   +++ I G    G  +T A N F  +  F +YGF +SHAA++
Sbjct: 687  NQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASF 746

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  
Sbjct: 747  AHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNI 806

Query: 830  VG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +         +      I G        ++    + P+ ++ED   R+     +RR    
Sbjct: 807  LEETPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRLRL---DRRAFTL 862

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  A A       R   L ++  +            ++   +F     +   +    K  
Sbjct: 863  LADADAFGSLDIDRRAALWAVRRLP----------NDETLPLFRAAAASELAQEPRTKLP 912

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
               +S     +         GHPL   +  L   G+           G  +++A +V  +
Sbjct: 913  EMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVR 972

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG  + ++T  +         +P
Sbjct: 973  QRPGSAKG--VVFLTIEDETGIANIVIWP 999


>gi|253732353|ref|ZP_04866518.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            USA300_TCH959]
 gi|253723875|gb|EES92604.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            USA300_TCH959]
          Length = 1065

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/1025 (30%), Positives = 517/1025 (50%), Gaps = 83/1025 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L    +G + L +L S + +         +
Sbjct: 63   GMTIYVTNGLNTVET-------------VVLAKNNDGLKDLYQLSSEIKM----NALEHV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L+      +I+               +  +   +   T    + D L +++Q    
Sbjct: 106  SFELLKRFSNNMIII----------FKKVGDQHRDIVQVFETHNDTYMDHLSISIQ---- 151

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                                V   N  + + +D +    L A+  +T +      +    
Sbjct: 152  ----------------GRKHVWIQNVCYQTRQDADTISALAAIRDNTKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +     E+  +  D+  E L     IA++C   L+ H  +LP++     +  +K     
Sbjct: 195  AHFLTEKEINQL--DINQEYLTQVDVIAQKCDAELKYHQSLLPQYETPNDESAKKY---- 248

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                    L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N
Sbjct: 249  --------LWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTN 300

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ V
Sbjct: 301  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERV 360

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L 
Sbjct: 361  IQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLD 418

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +   
Sbjct: 419  EAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDT 478

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + +
Sbjct: 479  G--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVF 536

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   
Sbjct: 537  ELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPS 596

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ ++
Sbjct: 597  KVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESER 656

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A
Sbjct: 657  QHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYA 716

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  +
Sbjct: 717  NILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQS 776

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  +    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +
Sbjct: 777  VKVIVDERYQNGKYKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQV 836

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                     +   + + +        + K   E       ++  + E+  LGFY S HP+
Sbjct: 837  LDG------DLNIEQDGLLFD---ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPV 887

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            D  K  + K  +  ++          I +       +Q +T+ G  + +V  ++  +  +
Sbjct: 888  D--KKFVAKQYLTIFK-LSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVILNDGIETLD 942

Query: 1029 ANFFP 1033
               FP
Sbjct: 943  GVIFP 947


>gi|22299599|ref|NP_682846.1| DNA polymerase III subunit alpha [Thermosynechococcus elongatus
           BP-1]
 gi|22295783|dbj|BAC09608.1| DNA polymerase III alpha subunit [Thermosynechococcus elongatus
           BP-1]
          Length = 872

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/792 (40%), Positives = 460/792 (58%), Gaps = 43/792 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L +++ +      PAIA+TD   ++ A+E  +      ++P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPDLVARAMELGMPAIALTDHGVMYGAIELLKLCRGKPLKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +   D  K   + +         V+L    +GY  L +L +  +L   QGK  
Sbjct: 62  IIGNEMYVINGDITKQERKPR------FHQVVLAKNKQGYHNLCKLTTISHLQGFQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L +   EGLI+ +    G I +A      ++A      +++ FG+  Y+ 
Sbjct: 116 FARPCINKELLAQY-REGLIVTSACLGGEIPQAILQGKPELARSVAAWYQQTFGEDFYLE 174

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR    ++V++     + ++ATN+S F+S  D EAHD L+ +  + ++S + 
Sbjct: 175 IQDHGSQEDRVVNVELVRIGRELGIKIIATNDSHFISCHDVEAHDALLCIQTNKLLSDEK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           R R +   YLK+ +EM  +F D      + EAL NT+E+A +         P  P F   
Sbjct: 235 RLRYSGTEYLKSAAEMARLFRDHLPDEVIQEALANTLEVADKIEAYNIFREPQSPEFPVP 294

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                    +  L   A  GL  R       +      YRQRL++EL ++ +M FS YFL
Sbjct: 295 PG----HTADTYLEQVAWQGLLERFQ--LSDRQQLEATYRQRLEYELKMLQQMGFSNYFL 348

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           +V D+I++A+ +NIPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 349 VVWDYIKYARDHNIPVGPGRGSAAGSLVAYALRITNIDPVHHGLLFERFLNPERKSMPDI 408

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D DFC DRR+EVI+YV  KYG +RVAQIITF  + +KA L+DV R L +PYSQ D++ KL
Sbjct: 409 DTDFCIDRREEVIQYVTQKYGSDRVAQIITFNRMTSKAVLKDVARVLDIPYSQADQMAKL 468

Query: 479 IPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           IP     PV L  +  +      F+E   +DP V R ++++ ++EG  +    HAAG+VI
Sbjct: 469 IPVVRGKPVKLAVMISEETPSPEFKEKYDSDPVVRRWIDMAMRIEGTNKTYGVHAAGVVI 528

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRG 593
              PL QLVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT+LQK+ + +    G
Sbjct: 529 ASEPLDQLVPLQRN-NDGAVITQYFMEDLESLGLLKMDFLGLKNLTMLQKTQELIEKNHG 587

Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            ++DL  +P DD +TY LL      GIFQLESSGM Q +  ++P  +EDI ++++LYRPG
Sbjct: 588 QRIDLDALPLDDAKTYQLLAEGKLEGIFQLESSGMHQIVRELKPSNLEDISSVLALYRPG 647

Query: 654 PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           P+D   I  + NRK+G+E I   H L+ P+L ET GV+ YQEQ+M++AQ L+GYSL +AD
Sbjct: 648 PLDAGLIPKFINRKHGREPIQYQHELLKPILSETYGVLCYQEQIMRMAQDLAGYSLGQAD 707

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           +LRRAMGKK KEEM+K +  FI GA+KNG+   IA  +F+ +  FA+Y            
Sbjct: 708 LLRRAMGKKKKEEMEKHEALFIEGAAKNGVPSAIAQELFKQMLDFAEYC----------- 756

Query: 772 ISYQTAWMKTHY 783
           +S +TA M   Y
Sbjct: 757 LSGETAVMTVEY 768


>gi|254786885|ref|YP_003074314.1| DNA polymerase III subunit alpha [Teredinibacter turnerae T7901]
 gi|259645265|sp|C5BNE0|DNAE2_TERTT RecName: Full=Error-prone DNA polymerase
 gi|237683874|gb|ACR11138.1| putative DNA polymerase III, alpha subunit [Teredinibacter turnerae
            T7901]
          Length = 1033

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/1037 (26%), Positives = 460/1037 (44%), Gaps = 82/1037 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++ HL   S+++ L GA     ++++       AIA+TD  +L  A++    A   GI+ 
Sbjct: 2    AYAHLFTFSNFTFLRGASHPAEMVEQAYRLGYDAIALTDECSLAGAVKAHVMAEECGIKL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQS 128
            I+G    +                     ++ L      Y  L   ++      D+G+ +
Sbjct: 62   IVGSYFKLSNN----------------CELIALAPDRAAYAELSGFITLARRRADKGEYT 105

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +    L+      LI+            +   ++   E     F   F  RL++ +  
Sbjct: 106  AHMD--DLRFRLQTCLII------------WLPTANTATEDNARIFSAAFKQRLWLGVGH 151

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
               G ++    Q   LA T++LP+VA++ +L  S E     DVL A+ H+T VSQ   R 
Sbjct: 152  QLAGGEQRLFQQWQNLAATYQLPMVASHLALMHSAERKPLQDVLTAINHNTSVSQLGTRL 211

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +   ++YLK   E+  ++   P  ++ T+ IA RC+F L       P+ +  +       
Sbjct: 212  QSNGENYLKAIDEVFYLYP--PGLIKQTLLIAERCNFSLNELKYQYPQELVPKG----LS 265

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR    +G   R   G  A+          L  EL +I  + +  YFL V D + +
Sbjct: 266  PIAHLRALVDSGKARRWPGGVPAQA------EAILAKELALIEELHYEYYFLTVYDIVAF 319

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++ NI +  GRGS A SV  Y L IT+I P + ++LFERF++ +R   PD D+DF   R
Sbjct: 320  ARQQNI-LCQGRGSAANSVVCYCLFITEIAPGQINVLFERFISKERDEPPDIDVDFEHQR 378

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R++VI+Y+  KY  +R A   T  S ++++A+RDVG+AL +  + VD L K +       
Sbjct: 379  REDVIQYIYTKYSRQRAALAATVISYRSRSAIRDVGKALGLDPALVDHLAKSLAWWDRTG 438

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              ++ I       E +L    V +   + Q++ G  RH S H  G VI    +S LVP+ 
Sbjct: 439  DLVKRIEAAGVQTERQL----VQQFFALVQQIIGFPRHLSQHVGGFVITQDKVSDLVPVE 494

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDD 605
                    V Q++ + +E  GL+K D L L  LT L+K+L  + +       L+ IP +D
Sbjct: 495  NASMPGRTVIQWDKEDLEAMGLLKVDILALGMLTALRKTLAMVNRYEPAIASLADIPPED 554

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
              TY +L    T+G+FQ+ES      L  ++P    D++  +++ RPGPI  D +  Y  
Sbjct: 555  PHTYDMLCAADTVGVFQIESRAQMSMLPRLRPRTFYDLVIEIAIVRPGPIQGDMVHPYLR 614

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK- 722
            R++G E +    P I  +LK T GV I+QEQ +++A + +G+S  EAD LRRAM    K 
Sbjct: 615  RRDGLEPVSYQSPDIADVLKPTLGVPIFQEQAIRLAMVAAGFSGGEADRLRRAMASWGKN 674

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              + + +E FI G   NG     A  +FE +  F  YGF +SH+A++A++ Y ++W+K H
Sbjct: 675  GNLLQFEETFIQGMLNNGYELDFAHRLFEQIKGFGGYGFPESHSASFAILCYASSWLKCH 734

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-------DNRI 835
            +P  F  A +  +        +  QDAR+  I ++P  VN    +  +           I
Sbjct: 735  HPAAFYCALLNSQPMGFYSPSQLIQDARRHGIPVLPVDVNHSEAESALEPANSYRTPWAI 794

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                  IKG+ +  A+ I +  A +P+  ++    R     L+R  L+ L  A AL    
Sbjct: 795  RLGFTRIKGLDSEAAQRIADNRAQQPYRDIQQLARR---SGLSRADLQKLAAADALHSLA 851

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R                 +         +F  E       +T      ++      ++
Sbjct: 852  GNRHLAHW------------QAASVEAQAGLFDDEPPPGDALLTAPPSLEKD----LTSD 895

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     HP+ + +        K   +      G  +++A +V  +Q+  T KG+  
Sbjct: 896  YNTTGLSLRVHPMGILRQEYPFSRCKQQRQLSGLSHGRFVQVAGLVTGRQRPGTAKGTL- 954

Query: 1016 GWVTFSEPAKEYEANFF 1032
             ++T  +         +
Sbjct: 955  -FLTLEDETGNINVVVW 970


>gi|237814543|ref|ZP_04593541.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A]
 gi|237789380|gb|EEP63590.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A]
          Length = 1078

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/1049 (24%), Positives = 436/1049 (41%), Gaps = 77/1049 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  +   S++S L GA     ++++  A     I I D N L   +    +        
Sbjct: 4    PYFEMAAASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQ-------- 55

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                  DI  +   ++    +  F    P +V+       Y +L  L++        K  
Sbjct: 56   ----WKDIRKESGFRLFIGCRLSFIDGTPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGE 111

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
              +  + L     +  I +        D A           RL    +     +++ L  
Sbjct: 112  CHLEWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTM 161

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R  
Sbjct: 162  PHQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLL 221

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK   EMV +F D PEA+  T +     +F L       P           K 
Sbjct: 222  EKNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KT 277

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L +    G         I         +  ++ EL +IAR+++  YFL V D +  
Sbjct: 278  AQQHLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTH 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +R
Sbjct: 333  AREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHER 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       
Sbjct: 392  REEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGG 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+ 
Sbjct: 452  IDRQHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIG 507

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VDLSL 600
                      +++   I++ GL+K D L L  LT ++K+ D + Q   +      + L+ 
Sbjct: 508  PAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLAS 567

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P  D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 568  LPRKDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMV 627

Query: 659  VVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
              Y  R++G+E      P         +  +L +T+GV ++QEQ M+IA   + ++  EA
Sbjct: 628  HPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEA 687

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LRRAM   +    +   +++ I G    G  +T A N F  +  F +YGF +SHAA++
Sbjct: 688  NQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASF 747

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  
Sbjct: 748  AHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNI 807

Query: 830  VG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +         +      I G        ++    + P+ ++ED   R+     +RR    
Sbjct: 808  LEETPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRLRL---DRRAFTL 863

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  A A       R   L ++  +            ++   +F     +   +    K  
Sbjct: 864  LADADAFGSLDIDRRAALWAVRRLP----------NDETLPLFRAAAASELAQEPRTKLP 913

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
               +S     +         GHPL   +  L   G+           G  +++A +V  +
Sbjct: 914  EMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVR 973

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG  + ++T  +         +P
Sbjct: 974  QRPGSAKG--VVFLTIEDETGIANIVIWP 1000


>gi|23500984|ref|NP_697111.1| error-prone DNA polymerase [Brucella suis 1330]
 gi|71151819|sp|Q8G381|DNAE2_BRUSU RecName: Full=Error-prone DNA polymerase
 gi|23346843|gb|AAN29026.1| DNA polymerase III, alpha subunit [Brucella suis 1330]
          Length = 1077

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/1049 (24%), Positives = 437/1049 (41%), Gaps = 77/1049 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  +   S++S L GA     ++++  A     I I D N L   +    +        
Sbjct: 3    PYFEMAAASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQ-------- 54

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                  DI  +   ++    +  F    P +V+       Y +L  L++        K  
Sbjct: 55   ----WKDIRKESGFRLFIGCRLSFIDGTPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGE 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
              +  + L     +  I +        D A           RL    +     +++ L  
Sbjct: 111  CHLEWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTM 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R  
Sbjct: 161  PHQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLL 220

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK   EMV +F D PEA+  T +     +F L       P           K 
Sbjct: 221  EKNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KT 276

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L +    G         I         +  ++ EL +IAR+++  YFL V D +  
Sbjct: 277  AQQHLYDLVWEGAARHYGADII-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTH 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +R
Sbjct: 332  AREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHER 390

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       
Sbjct: 391  REEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGG 450

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+ 
Sbjct: 451  IDRQHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLARDRLDETVPIG 506

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VDLSL 600
                      +++   I++ GL+K D L L  LT ++K+ D + Q   +      + L+ 
Sbjct: 507  PAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLAS 566

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 567  LPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMV 626

Query: 659  VVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
              Y  R++G+E      P         +  +L +T+GV ++QEQ M+IA   + ++  EA
Sbjct: 627  HPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEA 686

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LRRAM   +    +   +++ I G    G  +T A N F  +  F +YGF +SHAA++
Sbjct: 687  NQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASF 746

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  
Sbjct: 747  AHLVYISAWLKCHHPEVFAAALLNSQPMVFYAPAQIVRDAREHGVTVLPVDVNFSQWDNI 806

Query: 830  VG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +         +      I G        ++    + P+ ++ED   R+     +RR    
Sbjct: 807  LEETPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRLRL---DRRAFTL 862

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  A A       R   L ++  +            ++   +F     +   +    K  
Sbjct: 863  LADADAFGSLDIDRRAALWAVRRLP----------NDETLPLFRAAAASELAQEPRTKLP 912

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
               +S     +         GHPL   +  L   G+           G  +++A +V  +
Sbjct: 913  EMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVR 972

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG  + ++T  +         +P
Sbjct: 973  QRPGSAKG--VVFLTIEDETGIANIVIWP 999


>gi|90420676|ref|ZP_01228582.1| DNA polymerase III, alpha subunit [Aurantimonas manganoxydans
            SI85-9A1]
 gi|90334967|gb|EAS48728.1| DNA polymerase III, alpha subunit [Aurantimonas manganoxydans
            SI85-9A1]
          Length = 1171

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/1059 (24%), Positives = 446/1059 (42%), Gaps = 83/1059 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  + V S +S L GA     ++          + I D N +   +   Q A  A +  
Sbjct: 11   AFPEIGVASCFSFLAGASQPEELVVTAHRLGLAGLGIADRNTVAGVVRAHQAAREAELP- 69

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
                         L  +          P I        G+ RL  L+SR  L    K S 
Sbjct: 70   -------YAPGARLVFS-------DATPDIFAYPRDRAGWGRLCRLLSRGNLR-ATKGSC 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR-LLTFKKLFGDRLYVNLQR 188
             + L+ L E G    + +    +    +     + +      L   ++ FG  + + +  
Sbjct: 115  ILTLADLLEWGEGLNLAMIAPQALGCGQDGDAAAMEAGLADPLHRLREAFGGAVRLAVAP 174

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             H G D+ R ++   LA     P++ATN++   +       DV+ A+     +++     
Sbjct: 175  AHDGLDQRRMARAAHLAARCRTPMLATNDAFHHAPGRRRLQDVMTAIREHVPLAEAGFLL 234

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK   EM  +F   PEA+  T        F L+  A   P     E   + + 
Sbjct: 235  ARNAERHLKAPHEMERLFRHSPEAIAETGRFFAELQFDLKSLAYEYP----DEALKLSRS 290

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               ELR+ A  G   R  +G  A          R+D+EL +I  +++  YFL V   ++ 
Sbjct: 291  PAEELRHLAHEGARWRYPEGVPA------SVTTRIDYELKIIGELQYEPYFLTVHHIVKG 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I +  GRGS A SV  + + +T++ P R  LLFERF++ DR   PD DIDF  +R
Sbjct: 345  AREKGI-LCQGRGSAANSVVCFCIGVTEVSPERAGLLFERFISSDRREPPDIDIDFEHER 403

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+   YG +  A   T  + +A++A R+VG+A  +    V  L   +    +  
Sbjct: 404  REEVIQYIYEHYGRDNAAIAATVITYRARSAAREVGKAFGLSEDAVSALSGSVWGYSSAD 463

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +  A           D +   +L  S +L G  RH S H  G VI    + ++VP+ 
Sbjct: 464  LGEREAAA----AGLSAKDATTANVLSFSAELSGFPRHLSQHVGGFVITKGRIDEVVPIL 519

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG----VKVDLSLIP 602
                    + +++   +++ G++K D L L  L+ L+++ D L Q         DLS   
Sbjct: 520  NTGMEGRTIVEWDKDDLDELGILKIDILALGMLSCLRRAFDLLQQHYDLPLTLADLSKA- 578

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             DD  TY ++    TLG+FQ+ES      L  ++PDC  D++  V++ RPGPI  D +  
Sbjct: 579  QDDQPTYAMIQRADTLGVFQIESRAQMTMLPKLRPDCFYDLVIEVAIVRPGPIQGDMVHP 638

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  RK G E +      +  +L  T GV ++QEQ M+IA + +G++ +EAD LRRAM   
Sbjct: 639  YLRRKMGLEPVTFPKEELREVLGRTLGVPLFQEQAMKIAIVAAGFTPNEADRLRRAMATF 698

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            +    +   +++ + G    G  +  A   F+ +  F +YGF +SHAA++A++ Y + W+
Sbjct: 699  RRVGTIHTFQKKMVEGMVARGYERDFAERCFKQIEGFGEYGFPESHAASFALLVYASCWL 758

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-------- 831
            K HYP  F AA +  +        +  +DAR+  +++ P  +N    D  +         
Sbjct: 759  KCHYPDVFAAALLNAQPMGFYAPSQIVRDAREHGVEMRPVDINRSGWDQSLEAAPFDPGR 818

Query: 832  --------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
                           + +      +KG+G    R ++E      +DS+ D   R     L
Sbjct: 819  MKARNAGMRDHIRTRHAVRLGFRQVKGLGEADMRTLVEVRGAG-YDSVRDLWLR---SGL 874

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG---TF 934
             R  +E L  A A    GYSR   L +   +           +++   +F          
Sbjct: 875  KRATIERLADADAFASLGYSRRDALWACRALDAKG-------SSERLPLFEQAATRDLQA 927

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
                TL    V    +   N+ R L      HP+   +  L  + +   E       G+ 
Sbjct: 928  EPDATLPPMPVGEEVI---NDYRFLSLSLKAHPVSFVRRDLDALRVIPDERLERLRSGSW 984

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +A +V+ +Q+  + KG  + ++T  +         +P
Sbjct: 985  VTVAGLVLIRQRPGSAKG--VIFMTIEDETGTANIIVWP 1021


>gi|189023329|ref|YP_001934097.1| DNA polymerase III subunit alpha [Brucella abortus S19]
 gi|189018901|gb|ACD71623.1| DNA polymerase III subunit alpha [Brucella abortus S19]
          Length = 1071

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/1041 (24%), Positives = 434/1041 (41%), Gaps = 77/1041 (7%)

Query: 18   SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDI 77
            S++S L GA     ++++  A     I I D N L   +    +              DI
Sbjct: 5    SNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQ------------WKDI 52

Query: 78   DMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
              +   ++    +  F    P +V+       Y +L  L++        K    +  + L
Sbjct: 53   RKESGFRLFIGCRLSFIDGTPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGECHLEWADL 112

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHRGYDRY 195
                 +  I +        D A           RL    +     +++ L   H+G D  
Sbjct: 113  LFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTMPHQGQDGR 162

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYL 254
            R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R      + +L
Sbjct: 163  RAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLEKNAERHL 222

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
            K   EMV +F D PEA+  T +     +F L       P           K  +  L + 
Sbjct: 223  KPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KTAQQHLYDL 278

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
               G         I         +  ++ EL +IAR+++  YFL V D +  A++  I +
Sbjct: 279  VWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTHAREKGI-L 332

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
              GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +RR+EV++YV
Sbjct: 333  CQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHERREEVMQYV 392

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
             ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       +  Q I  
Sbjct: 393  YDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGGIDRQHI-- 450

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
              R       +P + R +E++  L G  RH S H  G V+    L + VP+         
Sbjct: 451  --RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIGPAAMDKRS 508

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VDLSLIPFDDHET 608
              +++   I++ GL+K D L L  LT ++K+ D + Q   +      + L+ +P  D   
Sbjct: 509  FIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLASLPRKDKAV 568

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKN 666
            Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  R++
Sbjct: 569  YDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMVHPYLRRRS 628

Query: 667  GKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
            G+E      P         +  +L +T+GV ++QEQ M+IA   + ++  EA+ LRRAM 
Sbjct: 629  GQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEANQLRRAMA 688

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              +    +   +++ I G    G  +T A N F  +  F +YGF +SHAA++A + Y +A
Sbjct: 689  TFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASFAHLVYISA 748

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----D 832
            W+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  +       
Sbjct: 749  WLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNILEETPDVH 808

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              +      I G        ++    + P+ ++ED   R+     +RR    L  A A  
Sbjct: 809  LALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRLRL---DRRAFTLLADADAFG 864

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                 R   L ++  +            ++   +F     +   +    K     +S   
Sbjct: 865  SLDIDRRAALWAVRRLP----------NDETLPLFRAAAASELAQEPRTKLPEMAASEHV 914

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +         GHPL   +  L   G+           G  +++A +V  +Q+  + KG
Sbjct: 915  IADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVRQRPGSAKG 974

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + ++T  +         +P
Sbjct: 975  --VVFLTIEDETGIANIVIWP 993


>gi|119386996|ref|YP_918051.1| DNA polymerase III, alpha subunit [Paracoccus denitrificans PD1222]
 gi|119377591|gb|ABL72355.1| error-prone DNA polymerase, DnaE-like protein [Paracoccus
            denitrificans PD1222]
          Length = 1077

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/1052 (24%), Positives = 439/1052 (41%), Gaps = 86/1052 (8%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             ++      +V L V S++S L GA     +          A+ I D N+L   +     
Sbjct: 15   VEHPNPPADYVELAVTSAFSFLHGASHPRELALAAHLMGYDALGIADLNSLAGVVRLHAT 74

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A    ++P+IG ++ +                      +   +    Y RL  L+++   
Sbjct: 75   AKKLHLRPVIGARIVLADGTAF----------------LAYPTDRAAYGRLASLITKGRR 118

Query: 122  LD--QGKQSVRICLSWLQEIGTEG----LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             D     Q    C   L ++ T      LI L G    P+              RL    
Sbjct: 119  HDLAGNWQKKGRCDLNLADLATHAQGMRLIWLPGDDLSPLPDLAL---------RLPQLS 169

Query: 176  KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             +    LY      RG DR R +++ + A    L +VA N+  + + +     DV+  + 
Sbjct: 170  HVAASWLY------RGDDRARINRLDRAAQAAGLSIVAVNDVHYHAPDRRPLQDVMTCIR 223

Query: 236  HSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
              T +++         + +LK  +EMV +F+D P A+  T EIA  C F L       PR
Sbjct: 224  EGTTIARAGLLLAQNAERHLKPPAEMVRLFADWPHAIRATREIADSCRFSLDELQYEYPR 283

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                         +  L N    G + R   G   K       R  L  EL +I   K +
Sbjct: 284  ESVPPG----LTPQQHLENLTWQGADWRYPAGVPDK------VRATLIKELALIREKKIA 333

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFL + D +++A+   I +  GRGS A S   Y L IT +DP +  LLFERF++ +R  
Sbjct: 334  QYFLTIHDIVRFAEDRAI-LHQGRGSAANSAVCYVLGITPVDPAKHELLFERFISQNRKE 392

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF  +RR+EVI+++ ++Y  +R     T    + ++A+R+VG+ + +       
Sbjct: 393  PPDIDVDFEHERREEVIQHIYDRYRRDRAGLCATVIHYRPRSAIREVGKVMGLSEDVTSA 452

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            L   +       +S    A D+      L DP + R + +++++ G+ RH S H  G V+
Sbjct: 453  LADTVWGSWGKDMS----AADTMQAGLDLGDPLLRRTVRLAEEMIGMPRHLSQHVGGFVL 508

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
             + PLS+ VP+      D    +++   I++  ++K D L L  LT ++K    +     
Sbjct: 509  TEGPLSETVPIGNAAMPDRSFIEWDKDDIDELHILKVDVLALGMLTCIRKCFALIKAHYG 568

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              + LS    DD  TY +L    ++G FQ+ES      L  ++P    D++  V++ RPG
Sbjct: 569  KVLTLSDFDHDDQPTYKMLQRGDSIGTFQVESRAQMAMLPRLKPKRFYDLVIQVAIVRPG 628

Query: 654  PID--NIVVYNNRKNGKEKIVSIHP------LIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            PI    +  Y  R+ G E +    P       +  +L  T+GV I+QEQ M+IA + + +
Sbjct: 629  PIQGNMVHPYLRRRAGLETVDFPGPRDGDPDELKNILFRTEGVPIFQEQAMKIAMVAAEF 688

Query: 706  SLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            + +E D LR+AM   + +  + + ++R +    + G ++  A   F  +  F DYGF +S
Sbjct: 689  TPNEVDDLRKAMATFRSRGTIGQLQDRMVGKMVERGYTRDFAERCFNQIKGFGDYGFPES 748

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAAA+A ++Y +AW+K H+P  F AA +  +        +  +DAR   + ++P  VN  
Sbjct: 749  HAAAFAHLAYVSAWLKCHHPAAFAAALLNSQPMGFYAPAQIVRDARDHGVTVLPADVNIS 808

Query: 825  CVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
              D  +    G   +   L  I G+    A  I +A  + P+  L D  +R     L+ R
Sbjct: 809  EWDNTLEPCDGTFALRLGLRQIDGLPEALAERIKQARHE-PYADLADLKTRA---GLDAR 864

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             +  +  A  L   G  R   L     ++                +F          +TL
Sbjct: 865  AIRLIAAADGLRSMGLDRRAGLWQARALRDA----------PELPLFGRRDEGPEPAVTL 914

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                +         + + L      HP+   +  L   G        A    + +R+A +
Sbjct: 915  PAMPLY---EHVTADYQTLRLSLKAHPMRFLRRSLTAQGYVPAAGLAALSNRSRLRMAGI 971

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V+ +Q+  +  G+   +VT  +         +
Sbjct: 972  VLVRQRPGSANGT--CFVTLEDETGVANLVVW 1001


>gi|163856925|ref|YP_001631223.1| error-prone DNA polymerase [Bordetella petrii DSM 12804]
 gi|163260653|emb|CAP42955.1| DNA polymerase III, alpha subunit [Bordetella petrii]
          Length = 1065

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/1040 (26%), Positives = 449/1040 (43%), Gaps = 66/1040 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQ  S++S L+GA     ++ + A     A+AITD  +L   +     A +  + 
Sbjct: 19   PAYAELQCLSNFSFLQGASRPEELVAQAAQLGYAALAITDECSLAGVVRAHVAAKSCELP 78

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             II           L +      P PT   +VLL    EGY  L EL++        K  
Sbjct: 79   LII--------GSTLALQGSADAPGPT---LVLLAQNREGYGNLSELITLGRSR-APKGQ 126

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+C   +   G     +        I        +    ++     + F  R +V L  
Sbjct: 127  YRLCADDIAAPGPGHAHLRGVPDCLAILAPPDSIDADTLARQAAWLARTFPGRAWVGLTL 186

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
             HR  D    + V Q A    LP+VA              HD L A+     V+Q     
Sbjct: 187  LHRARDDLHRAAVQQAAQAAALPMVALGRVQMHLRSRKPLHDTLAAIRSKRSVAQCGYDL 246

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +   + +L+ R  + S++    +AL  T+ IA+RCSF L       P  I    +     
Sbjct: 247  QANAEQHLRTRLRLASLYP--ADALAQTLVIAQRCSFSLDTLRYEYPDEIVPAGE----T 300

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR +  AG   R      A          +++ EL +I  +K+  YFL V D +Q 
Sbjct: 301  PASYLRREVYAGARGRYHGDVPA------SVTAQIEKELTLITELKYEPYFLTVYDIVQE 354

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++ NI +  GRGS A SV  Y L IT + P +   LFERF++ +R   PD D+DF   R
Sbjct: 355  ARRRNI-LCQGRGSAANSVVCYCLGITAVAPEQSKALFERFISKERREPPDIDVDFEHQR 413

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+E+I+Y+ +KYG  R A      + + ++ LRD GRAL +    +D + +         
Sbjct: 414  REEIIQYIYDKYGRHRAALTGVVITYRPRSVLRDTGRALGVDLGIIDAVARAHQWWDGRQ 473

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L+ + +     ++R+A         +++ L G  RH S H  G VI    L++LVP+ 
Sbjct: 474  AMLRTLGNCGLDPDSRVA----RHWAVLAETLIGFPRHLSQHPGGFVISRGNLARLVPIE 529

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                 D  V Q++   ++  GL+K D L L  L++L ++LD  AQR    + L  IP DD
Sbjct: 530  NAAMPDRSVVQWDKDDLDALGLLKVDILALGMLSVLHRALDLTAQRRGQPLALHEIPQDD 589

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
              TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +   Y  
Sbjct: 590  EATYDMICDADTVGVFQIESRAQMSMLPRLRPREYYDLVVQVAIVRPGPIQGGMVHPYLK 649

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+ G E        +  +L  T+GV I+QEQVMQIA + +G+S  EAD LRR+M   K K
Sbjct: 650  RRQGLEDETYPSEAVRGVLSRTKGVPIFQEQVMQIAMVAAGFSAGEADELRRSMAAWKRK 709

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +DK  ++ ++G  KN  S   A  I   +  F +YGF +SHAA++A+++Y ++W+K H
Sbjct: 710  GGIDKYTDKLVAGLLKNNYSAEFAAAIIRQIEGFGEYGFPESHAASFALLAYASSWLKRH 769

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD---------- 832
             P  FLAA +  +        +  QDAR+  + ++P      C +  + +          
Sbjct: 770  EPEAFLAALLNSQPMGFYAPAQLVQDARRHGVVVLPADAAVSCWEAALENLPAPPGQPPA 829

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               +   L  ++G+     R I +A A +P+    D   R    +     L +       
Sbjct: 830  RPAVRLGLNQVQGLSEDAGRRIEQARAARPYTDTRDLGRRAALSRHELDALAAADAL--- 886

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
                       +SL   ++ A W E + +  H ++        +    L   +   S   
Sbjct: 887  -----------RSLAGHRRLASW-EASASVAHRDLLRDADVAEAATPVLPAPTEGQS--- 931

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               + R L      HP+ + +P LR +  +              R   +V  +Q+ +T K
Sbjct: 932  ISADYRSLRLTLRRHPVALLRPRLRALRFETAAVLRHYPDRRLARACGLVTVRQRPQTAK 991

Query: 1012 GSRIGWVTFSEPAKEYEANF 1031
            G+   +VT  +         
Sbjct: 992  GT--IFVTLEDETGPVNVVV 1009


>gi|171059584|ref|YP_001791933.1| DNA polymerase III subunit alpha [Leptothrix cholodnii SP-6]
 gi|170777029|gb|ACB35168.1| DNA polymerase III, alpha subunit [Leptothrix cholodnii SP-6]
          Length = 1109

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/1082 (25%), Positives = 443/1082 (40%), Gaps = 91/1082 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC----- 63
            P +  L   S++S L GA     ++ + A     A+AITD  ++   +   + A      
Sbjct: 6    PDYAELHCRSNFSFLSGASHAEELISRAARLGYRALAITDECSVAGVVRAHEAARHPRGE 65

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             A   P +   +             G  P      ++LLV    GY +L  L++      
Sbjct: 66   RAPDDPGLLRLIIGSEFTLSPAAASGTRPPHPGGRLLLLVRNRAGYGQLCTLITLARSR- 124

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
              K   R+         ++   +L       +           A   +  F +    R+ 
Sbjct: 125  CAKGDYRLDADDFDPAPSDCWALLLPRREDDLPTL-----LTQARWLVARFGE--RARIA 177

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            + L +H   D  R +     +     PLVA  + L          D L A+ H   ++  
Sbjct: 178  IELLQH-ADDNLRIAHARAASQASGAPLVAAGDVLMHVRSRKPLADTLTAIRHHLPLADC 236

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                    + +L++R  +  I+   PE L  +V IA  C+F L       P  I      
Sbjct: 237  GHLLMRNAEQHLRSRLALAQIYR--PEWLAESVRIADACTFSLDELRYEYPDEIVPAG-- 292

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                  + LR + +AG   R    +   G        +++ EL ++A M++  +FL V D
Sbjct: 293  --HSASSYLRQETLAGAARRYPPHSHPDGI-PPGVLAQIEHELALVAEMRYEAFFLTVHD 349

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             ++ A++  I +  GRGS A S   Y L IT++DP + +LLFERF++ +R   PD D+DF
Sbjct: 350  IVRQARRLGI-LCQGRGSAANSAVCYCLGITEVDPTQTTLLFERFISRERGEPPDIDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+E+I+Y+  KYG  R A      + + + ALRDVGRA  +    +D + K     
Sbjct: 409  EHERREEIIQYIYAKYGRHRTALAAAVSTYRVRGALRDVGRAFGLDELLIDAVAKSYQWF 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                   + +A+    +      P   + LE++  L G  RH S H+ G VI    LSQL
Sbjct: 469  DGRGALSERLAE----QGLDAESPVTQQWLELATTLMGFPRHLSQHSGGFVIARESLSQL 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--------- 593
            VP+         + Q++   +E  GL+K D L L  LT+L+KSLD               
Sbjct: 525  VPIEPAAMDGRQIIQWDKDDLESLGLLKVDVLALGMLTVLRKSLDLANAWHGRTAQAWRG 584

Query: 594  ---------------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               L  IP DD  TY ++    T+G+FQ+ES   +  L  ++PD
Sbjct: 585  GSGSFSHRAPQRPEREPWTLHHIPRDDPATYAMIRKADTVGMFQIESRAQQSMLPRLRPD 644

Query: 639  CIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
               D++  V++ RPGPI   +   Y  RK GKE+  S +P +D  L  T GV I+QEQVM
Sbjct: 645  KFYDLVIEVAIVRPGPIQGGMVHPYLRRKQGKERADSPYPALDAALARTLGVPIFQEQVM 704

Query: 697  QIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            Q+  + +G+S  EAD LRRAM   + K  +    ER + G  + G  +  A  IF  +  
Sbjct: 705  QVCMIAAGFSPGEADGLRRAMAAWRRKGGVHHFHERIVGGMVERGYERAFAEGIFRQIQG 764

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            F +YGF +SHA ++A++++ +AW+K H P  FLAA +  +        +   DAR+  ++
Sbjct: 765  FGEYGFPESHAYSFAILAWFSAWLKCHEPAAFLAALLNSQPMGFYGPAQLVADARRHQVE 824

Query: 816  IMPPSVNTPCVDFKV-------------------------GDNRIYYSLAAIKGVGTTTA 850
            + P  V     D  +                         G   +   L  + G+   +A
Sbjct: 825  VRPVDVTRSDWDCTLEAPSPAAAAPATDPPASARPPGSGAGGPAVRLGLRQVGGLSQASA 884

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              +++A  +  F  + D   R     L+   L++L  A AL      R Q + +      
Sbjct: 885  ERLLQARREAAFIDVHDLARRA---ALDPHELQTLARADALAALAGHRRQQVWAAAAPPA 941

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
                               +      +++L +     +      +    G     HPL +
Sbjct: 942  APLTTGTGPGAG----LLQDAPIREPQLSLIEAPEGEAVTL---DYAATGLSLRRHPLAL 994

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +  LR+  +K   E      G  +R   +VVS+QQ  T  G+   +VT  +        
Sbjct: 995  LRERLRRQAVKSAAELARVPDGRVVRACGLVVSRQQPGTAHGT--VFVTLEDETGVVNLI 1052

Query: 1031 FF 1032
             +
Sbjct: 1053 VW 1054


>gi|254476960|ref|ZP_05090346.1| DNA polymerase III, alpha subunit subfamily, putative [Ruegeria sp.
            R11]
 gi|214031203|gb|EEB72038.1| DNA polymerase III, alpha subunit subfamily, putative [Ruegeria sp.
            R11]
          Length = 1123

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/1052 (25%), Positives = 459/1052 (43%), Gaps = 84/1052 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            +SP +V   + S +S L  A    ++     A    ++ I D N L   +    KA  A 
Sbjct: 35   RSP-YVEFGLASCFSFLHAASDAVDLTATAHALGYDSLGIADRNTLAGVVRLFTKARTAC 93

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD--- 123
            I+P+IG                 +        ++        Y RL  L+SR  +     
Sbjct: 94   IRPMIGA----------------RLILMCGCDLLAYPQDRAAYGRLSSLLSRGKMQTADG 137

Query: 124  --QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
              Q K +  + L  L+E   +GL ++        D A   +        L   + +    
Sbjct: 138  NWQDKGATHLTLDMLRE-HADGLHLILMPPD---DHATTLHQLARLLPVLPQMRHIAARY 193

Query: 182  LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            LY      RG DR R +++ +LA  H L L+ATN+ L+   +     DV+  + + T ++
Sbjct: 194  LY------RGDDRARINRLDRLARQHGLMLLATNDVLYHRPDRRPLQDVMTCIRNGTTIA 247

Query: 242  QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            +         + +LK+  EM  +F+D P A+  T ++A   +F L       P  I  + 
Sbjct: 248  KAGYLLEANAERHLKSPEEMCRLFADWPHAIRATRKLADDITFQLSDLKYEYPHEIVPQG 307

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                ++    L+     G + R   G         D R  ++ E ++I R   + YFL +
Sbjct: 308  ----QQPLERLQQLTWEGAKERYPAGV------PTDVRLLIEKEFDLIDRKGIARYFLTI 357

Query: 361  ADFIQWAKKNNIP--VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
             D +++A+++  P  +  GRGS A S   Y L IT +DP +  +LFERFL+  R   PD 
Sbjct: 358  HDIVRFAREDAEPPILCQGRGSAANSAVCYCLGITAVDPSQTDVLFERFLSEARDEPPDI 417

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF  +RR+EVI+Y+  KYG  R     T    + ++A+R+VG+A+ +      +L   
Sbjct: 418  DVDFEHERREEVIQYIYQKYGRARAGLCATVIHYRPRSAIREVGKAMGLSEDVTSKLAGT 477

Query: 479  IPNDPAHPVSLQAIADDSRFREAR--LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            I        S +   DD+R REA   L+DP +  +L++++++ G+ RH S H  G ++ +
Sbjct: 478  IWG------SFEGQMDDARAREAGLDLSDPYLRMVLKLAREMIGMPRHLSQHVGGFILTE 531

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK 595
            RPL+++VP+     +D    +++   I+  G+ K D L L  LT + K    L A  G +
Sbjct: 532  RPLTEIVPIGNGAMADRSFIEWDKDDIDALGIFKVDVLALGMLTCIAKVFGLLEAHYGRQ 591

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D++ +P +D  TY +L    +LG+FQ+ES      L  ++PD   D++  V++ RPGPI
Sbjct: 592  LDMASVPPEDKATYKMLCEGDSLGVFQVESRAQMAMLPKLRPDTFYDLVIEVAIVRPGPI 651

Query: 656  --DNIVVYNNRKNGKEKI-------VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
              D +  Y  R+   E +             ++ +L  T GV I+QEQ M+IA   + +S
Sbjct: 652  QGDMVHPYLRRRQKLEPVDYPRPGPEYPQDEMERILHRTMGVPIFQEQAMKIAMDAALFS 711

Query: 707  LSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
              E++ LR+AM   + +  ++  +++ +      G     A   F+ +  F +YGF +SH
Sbjct: 712  PEESNALRKAMATFRSRGTIETLQDKMVGRMVARGYDPDFAQRCFDQIKGFGEYGFPESH 771

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AA++A + Y ++WMK HYP  F    +  +        +  +DAR   +++    VN   
Sbjct: 772  AASFAKLVYVSSWMKCHYPAAFACGLLNSQPMGFYAPAQIVRDARDHGVEVRAVDVNYSD 831

Query: 826  VDFKVGD----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
             D  +        +   +  + G+    A+ IM A  D PF  + D  SR      + R 
Sbjct: 832  WDCTLEPTDRGFALRLGMRQVDGMRMDAAQRIMAAR-DSPFADVADLKSRCRLDAGSLRR 890

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            L +   A AL   G  R   L             +  +      IF H +          
Sbjct: 891  LAA---ADALRSMGMDRRAALW----------QTQALKDAPSLPIFEHAETAAHGTEPEV 937

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                   +     + + L      HP+  ++  L        ++   +  G  + LA +V
Sbjct: 938  HLPAMPRAEHVVADYQTLRLSLKAHPMQFFRASLHAQRFHRAQDLKGSHHGQRVSLAGLV 997

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +Q+  + KG  + ++T  +         +P
Sbjct: 998  LVRQKPGSAKG--VCFITLEDETGVANLVIWP 1027


>gi|90417277|ref|ZP_01225203.1| DNA polymerase III, alpha subunit, putative [marine gamma
            proteobacterium HTCC2207]
 gi|90330862|gb|EAS46125.1| DNA polymerase III, alpha subunit, putative [marine gamma
            proteobacterium HTCC2207]
          Length = 1048

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/1066 (24%), Positives = 462/1066 (43%), Gaps = 109/1066 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L   S+++ L GA   + ++ + +     AIAITD  +L   ++    A     + 
Sbjct: 2    SYAELHCISNFTFLRGASHPHELVKRASDLNYSAIAITDECSLAGVVKAHVAAIDHDFKL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +D                    ++ L    + Y  L  L++        K S 
Sbjct: 62   IIGSEFRLD-----------------GHKLIALAPNRQAYSELSALITLARRRGD-KGSY 103

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
            ++  + L+      L++        +D            +R       F DRL+V +   
Sbjct: 104  QLDWNDLEGNLRNALLIWLPSQQLDVDH-----------QRGEQLSNWFKDRLWVGITHL 152

Query: 189  ---HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD- 244
               H   D Y       LA   +LP+VA  +    S +     D L A+ H+  V Q   
Sbjct: 153  LSGHDANDYYYYR---NLAAMWQLPMVACGDVHMHSRQRQPLQDTLTAIHHNCSVMQLGQ 209

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R     + +L+  +++  ++      L  T+ IA+RC F L+      P  +  E     
Sbjct: 210  RRFANSERHLRGLNQLQKLYP--GALLRETLNIAKRCHFSLEELRYEYPSEVVPE----H 263

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                 +LR     G+  R   G       +Q  R+++++EL VIA + +  YFL V D +
Sbjct: 264  LTATEQLRFLVEQGVAKRWPNGI------SQSIRKQIEYELQVIAELNYESYFLTVEDIV 317

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+  NI +  GRGS A SV  Y L IT++ P + SLLFERF++ +R   PD D+DF  
Sbjct: 318  AFARSRNI-LCQGRGSAANSVVCYCLFITEVAPDQISLLFERFISRERNEPPDIDVDFEH 376

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EVI+Y+  KYG +R A   T  S + ++A+RDVG+AL +    +++L + + +   
Sbjct: 377  QRREEVIQYIYQKYGRQRAALAATVISYRPRSAVRDVGKALGLDALFIEQLSQSM-SWWD 435

Query: 485  HPVSLQAIA------DDSRFREARLADPSVDR----------LLEISQKLEGLYRHASTH 528
                LQA+        + + +E +  +                 ++  ++ G  RH S H
Sbjct: 436  RQADLQALFQQQGGSQEKKNQEKKNQEKKNQEENSQGQIATHFFKLLNEILGFPRHLSQH 495

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
              G +I   P+S LVP+     ++  V Q++   IE  GL+K D L L  L+ + +  D 
Sbjct: 496  VGGFIITKSPISTLVPVVNASMAERTVIQWDKYDIEALGLLKIDVLALGMLSAVHRCFDL 555

Query: 589  LAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            ++Q   + + +  IP DD  TY +L T  ++G+FQ+ES      L  ++P C  D++  +
Sbjct: 556  ISQHQQINLTMQSIPKDDPATYDMLCTADSVGVFQIESRAQMAMLPRLKPRCFYDLVIEI 615

Query: 648  SLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            ++ RPGPI   +   Y  R+ G E +      I  +L+ T G+ ++QEQV+++A + +G+
Sbjct: 616  AIVRPGPIQGGMVHPYLRRRQGLETVDYPSQEIKSVLERTLGIPVFQEQVIRLAMVAAGF 675

Query: 706  SLSEADVLRRAMG------KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            S  +AD LRRAM             + + +++   G    G S   A  +F+ +  F  Y
Sbjct: 676  SGGQADQLRRAMASSGKSGSGKNSTLAQFEQKLTDGMMARGYSLDFAERLFKQIQGFGVY 735

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GF +SH+A++A+++Y +AW+K H+P  F  A +  +        +  QDA++  I+I P 
Sbjct: 736  GFPESHSASFALLAYVSAWLKCHHPAAFCCALLNSQPMGFYTPSQLLQDAQRHQIEIRPI 795

Query: 820  SVNTPCVDFKVGDN----------RIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLED 867
             V     +  +              I   L  IKG     A  I+ A ++  + F+SL  
Sbjct: 796  DVCHSDWEHSLEMGSLEAGSSTEPAIRLGLCLIKGFSYRAAERIVLARSNSQQGFNSLPQ 855

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
                    + +  +L S   AGAL     +R Q       I+ Y   +E  + +  E++ 
Sbjct: 856  LSRAAGLSQADLALLSS---AGALRSLTSNRRQAHWDALAIEDYRPLLEPAQNS--ESLP 910

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEES 986
            A               S  +       +    G     HP+++ +   + +   K   + 
Sbjct: 911  AI-------------LSTPSEIEELNADYSSTGVSLGRHPMEILREQSKTLQRCKRTIDL 957

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                    +R+A +V  +Q+  T  G  + ++T  +         +
Sbjct: 958  PTLGNRRFVRIAGLVTGRQRPGTASG--VIFLTLEDETGNSNIVVW 1001


>gi|254690379|ref|ZP_05153633.1| error-prone DNA polymerase [Brucella abortus bv. 6 str. 870]
 gi|256258633|ref|ZP_05464169.1| error-prone DNA polymerase [Brucella abortus bv. 9 str. C68]
 gi|260755925|ref|ZP_05868273.1| error-prone DNA polymerase [Brucella abortus bv. 6 str. 870]
 gi|260884948|ref|ZP_05896562.1| error-prone DNA polymerase [Brucella abortus bv. 9 str. C68]
 gi|297247471|ref|ZP_06931189.1| error-prone DNA polymerase [Brucella abortus bv. 5 str. B3196]
 gi|260676033|gb|EEX62854.1| error-prone DNA polymerase [Brucella abortus bv. 6 str. 870]
 gi|260874476|gb|EEX81545.1| error-prone DNA polymerase [Brucella abortus bv. 9 str. C68]
 gi|297174640|gb|EFH33987.1| error-prone DNA polymerase [Brucella abortus bv. 5 str. B3196]
          Length = 1077

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/1049 (23%), Positives = 436/1049 (41%), Gaps = 77/1049 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  +   S++S L GA     ++++  A     I I D N L   +    +        
Sbjct: 3    PYFEMAAASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQ-------- 54

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                  DI  +   ++    +  F    P +V+       Y +L  L++        K  
Sbjct: 55   ----WKDIRKESGFRLFIGCRLSFIDGTPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGE 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
              +  + L     +  I +        D A           RL    +     +++ L  
Sbjct: 111  CHLEWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTM 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R  
Sbjct: 161  PHQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLL 220

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK   EMV +F D PEA+  T +     +F L       P           K 
Sbjct: 221  EKNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KT 276

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L +    G         I         +  ++ EL +IAR+++  YFL V D +  
Sbjct: 277  AQQHLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTH 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I +  GRGS A SV  + L IT ++P +  LLF+RF++ +R   PD D+DF  +R
Sbjct: 332  AREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFDRFISAERKEPPDIDVDFEHER 390

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       
Sbjct: 391  REEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGG 450

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+ 
Sbjct: 451  IDRQHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIG 506

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VDLSL 600
                      +++   I++ GL+K D L L  LT ++K+ D + Q   +      + L+ 
Sbjct: 507  PAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLAS 566

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P  D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 567  LPRKDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMV 626

Query: 659  VVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
              Y  R++G+E      P         +  +L +T+GV ++QEQ M+IA   + ++  EA
Sbjct: 627  HPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEA 686

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LRRAM   +    +   +++ I G    G  +T A N F  +  F +YGF +SHAA++
Sbjct: 687  NQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASF 746

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  
Sbjct: 747  AHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNI 806

Query: 830  VG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +         +      I G        ++    + P+ ++ED   R+     +RR    
Sbjct: 807  LEETPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRLRL---DRRAFTL 862

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  A A       R   L ++  +            ++   +F     +   +    K  
Sbjct: 863  LADADAFGSLDIDRRAALWAVRRLP----------NDETLPLFRAAAASELAQEPRTKLP 912

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
               +S     +         GHPL   +  L   G+           G  +++A +V  +
Sbjct: 913  EMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVR 972

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG  + ++T  +         +P
Sbjct: 973  QRPGSAKG--VVFLTIEDETGIANIVIWP 999


>gi|253734514|ref|ZP_04868679.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            TCH130]
 gi|253727568|gb|EES96297.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            TCH130]
          Length = 1065

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/1025 (31%), Positives = 519/1025 (50%), Gaps = 83/1025 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3    AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +    N   T             V+L    +G + L +L S + +         +
Sbjct: 63   GMTIYVTNGLNTVET-------------VVLAKNNDGLKDLYQLSSEIKM----NALEHV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L+      +I+               +  +   +   T    + D L +++Q    
Sbjct: 106  SFELLKRFSNNMIII----------FKKVGDQHRDIVQVFETHNDTYMDHLSISIQ---- 151

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                                V   N  + + +D +    L A+  +T +      +    
Sbjct: 152  ----------------GRKHVWIQNVCYQTRQDADTISALAAIRDNTKL-DLIHDQEDFG 194

Query: 252  HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +     E+  +  D+  E L     IA++C   L+ H  +LP++     +  +K     
Sbjct: 195  AHFLTEKEINQL--DINQEYLTQVDVIAQKCDAELKYHQSLLPQYETPNDESAKKY---- 248

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                    L   L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N
Sbjct: 249  --------LWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTN 300

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ V
Sbjct: 301  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERV 360

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L 
Sbjct: 361  IQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLD 418

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +   
Sbjct: 419  EAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDT 478

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + +
Sbjct: 479  G--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVF 536

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   
Sbjct: 537  ELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPS 596

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ ++
Sbjct: 597  KVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESER 656

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A
Sbjct: 657  QHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYA 716

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  +
Sbjct: 717  NILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQS 776

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  +    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +
Sbjct: 777  VKVIVDERYQNGKYKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQV 836

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  +E++       +F       + K   E       ++  + E+  LGFY S HP+
Sbjct: 837  LDGDLNIEQD-----GFLF----DILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPV 887

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            D  K  + K  +  ++          I +       +Q +T+ G  + +V  ++  +  +
Sbjct: 888  D--KKFVAKQYLTIFK-LSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVILNDGIETLD 942

Query: 1029 ANFFP 1033
               FP
Sbjct: 943  GVIFP 947


>gi|256045858|ref|ZP_05448733.1| error-prone DNA polymerase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112572|ref|ZP_05453493.1| error-prone DNA polymerase [Brucella melitensis bv. 3 str. Ether]
 gi|260563148|ref|ZP_05833634.1| error-prone DNA polymerase [Brucella melitensis bv. 1 str. 16M]
 gi|265992274|ref|ZP_06104831.1| error-prone DNA polymerase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994014|ref|ZP_06106571.1| error-prone DNA polymerase [Brucella melitensis bv. 3 str. Ether]
 gi|71151818|sp|Q8YEK2|DNAE2_BRUME RecName: Full=Error-prone DNA polymerase
 gi|260153164|gb|EEW88256.1| error-prone DNA polymerase [Brucella melitensis bv. 1 str. 16M]
 gi|262764995|gb|EEZ10916.1| error-prone DNA polymerase [Brucella melitensis bv. 3 str. Ether]
 gi|263003340|gb|EEZ15633.1| error-prone DNA polymerase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 1077

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/1049 (24%), Positives = 436/1049 (41%), Gaps = 77/1049 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  +   S++S L GA     ++++  A     I I D N L   +    +        
Sbjct: 3    PYFEMAAASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQ-------- 54

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                  DI  +   ++    +  F    P +V+       Y +L  L++        K  
Sbjct: 55   ----WKDIRKESGFRLFIGCRLSFIDGTPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGE 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
              +  + L     +  I +        D A           RL    +     +++ L  
Sbjct: 111  CHLEWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTM 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R  
Sbjct: 161  PHQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLL 220

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK   EMV +F D PEA+  T +     +F L       P           K 
Sbjct: 221  EKNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KT 276

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L +    G         I         +  ++ EL +IAR+++  YFL V D +  
Sbjct: 277  AQQHLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTH 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +R
Sbjct: 332  AREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHER 390

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       
Sbjct: 391  REEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGG 450

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+ 
Sbjct: 451  IDRQHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIG 506

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VDLSL 600
                      +++   I++ GL+K D L L  LT ++K+ D + Q   +      + L+ 
Sbjct: 507  PAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLAS 566

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P  D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 567  LPRKDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMV 626

Query: 659  VVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
              Y  R++G+E      P         +  +L +T+GV ++QEQ M+IA   + ++  EA
Sbjct: 627  HPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEA 686

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LRRAM   +    +   +++ I G    G  +T A N F  +  F +YGF +SHAA++
Sbjct: 687  NQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASF 746

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  
Sbjct: 747  AHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNI 806

Query: 830  VG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +         +      I G        ++    + P+ ++ED   R+     +RR    
Sbjct: 807  LEETPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRLRL---DRRAFTL 862

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  A A       R   L ++  +            ++   +F     +   +    K  
Sbjct: 863  LADADAFGSLDIDRRAALWAVRRLP----------NDETLLLFRAAAASELAQEPRTKLP 912

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
               +S     +         GHPL   +  L   G+           G  +++A +V  +
Sbjct: 913  EMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVR 972

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG  + ++T  +         +P
Sbjct: 973  QRPGSAKG--VVFLTIEDETGIANIVIWP 999


>gi|17988159|ref|NP_540793.1| error-prone DNA polymerase [Brucella melitensis bv. 1 str. 16M]
 gi|17983918|gb|AAL53057.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str. 16M]
          Length = 1078

 Score =  776 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/1049 (24%), Positives = 436/1049 (41%), Gaps = 77/1049 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  +   S++S L GA     ++++  A     I I D N L   +    +        
Sbjct: 4    PYFEMAAASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQ-------- 55

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                  DI  +   ++    +  F    P +V+       Y +L  L++        K  
Sbjct: 56   ----WKDIRKESGFRLFIGCRLSFIDGTPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGE 111

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
              +  + L     +  I +        D A           RL    +     +++ L  
Sbjct: 112  CHLEWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTM 161

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R  
Sbjct: 162  PHQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLL 221

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK   EMV +F D PEA+  T +     +F L       P           K 
Sbjct: 222  EKNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KT 277

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L +    G         I         +  ++ EL +IAR+++  YFL V D +  
Sbjct: 278  AQQHLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTH 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +R
Sbjct: 333  AREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHER 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       
Sbjct: 392  REEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGG 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+ 
Sbjct: 452  IDRQHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIG 507

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VDLSL 600
                      +++   I++ GL+K D L L  LT ++K+ D + Q   +      + L+ 
Sbjct: 508  PAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLAS 567

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P  D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 568  LPRKDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMV 627

Query: 659  VVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
              Y  R++G+E      P         +  +L +T+GV ++QEQ M+IA   + ++  EA
Sbjct: 628  HPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEA 687

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LRRAM   +    +   +++ I G    G  +T A N F  +  F +YGF +SHAA++
Sbjct: 688  NQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASF 747

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  
Sbjct: 748  AHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNI 807

Query: 830  VG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +         +      I G        ++    + P+ ++ED   R+     +RR    
Sbjct: 808  LEETPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRLRL---DRRAFTL 863

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  A A       R   L ++  +            ++   +F     +   +    K  
Sbjct: 864  LADADAFGSLDIDRRAALWAVRRLP----------NDETLLLFRAAAASELAQEPRTKLP 913

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
               +S     +         GHPL   +  L   G+           G  +++A +V  +
Sbjct: 914  EMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVR 973

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG  + ++T  +         +P
Sbjct: 974  QRPGSAKG--VVFLTIEDETGIANIVIWP 1000


>gi|329851038|ref|ZP_08265795.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19]
 gi|328839884|gb|EGF89456.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19]
          Length = 1069

 Score =  776 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/1038 (26%), Positives = 457/1038 (44%), Gaps = 82/1038 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ LQV + +S L GA S   +  + A     A+ + D N+L   ++  + A A G++ 
Sbjct: 2    TYIELQVTTHFSFLRGASSPEELFHRAAELGIEALGVVDRNSLAGIVQAHKWAKATGVRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC                +       S+++  +    Y  L  L+S    L +G+   
Sbjct: 62   IVGC----------------RLDLVDGASLLVYPTDKAAYSHLCRLLS----LGKGRAGK 101

Query: 130  RIC-LSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              C L W   E    GLI +                       L     +FGDR Y+ L 
Sbjct: 102  GKCQLDWNDVEAWNAGLIAVLVPDMAD----------DTCALNLRRLATIFGDRAYLALT 151

Query: 188  -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
             R R  D  R  ++ Q+A    +P VATN+ L+         DV+  + H+  + +   R
Sbjct: 152  LRRRPNDALRLYELTQIAVKLGVPTVATNDVLYHDASRRILQDVVTCIRHNCTIDEAGFR 211

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 D YLK   EM  +F   P+A+  T EIA RC F ++      P     E      
Sbjct: 212  RERHADRYLKPGDEMARLFKAYPDAVARTQEIAARCRFDMKELEYQYP----DEKSHPHL 267

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L      G   R   G   K        ++L  EL++IA M ++ YFL V D + 
Sbjct: 268  TPQQALEKFVRIGAAKRYPDGVPDK------VEKQLRHELDLIAEMGYANYFLTVHDIVH 321

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S   Y L IT++DP ++ LLF RFL+ +R   PD D+DF   
Sbjct: 322  FARSQDI-LCQGRGSAANSSVCYVLGITELDPAKYDLLFARFLSKNRNEPPDIDVDFEHA 380

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+ V+++V + YG +  A +      + + ALRDVG+AL +P   +  L +   +  A 
Sbjct: 381  RREIVMQWVFDTYGRDHAALVAVVTRYRIRGALRDVGKALGVPEDVLKVLAQQYRHW-AT 439

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +    +   +  R+AR     +   L+++++L    RH S H  G V+    L  L  +
Sbjct: 440  ELDETHLEGLNLNRDAR----RIRLTLDLTRQLVNAPRHLSQHPGGFVLTRDRLDDLAVI 495

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                  +  V +++   I++   +K D L L  LT ++KS D LA+   V +D++ IP D
Sbjct: 496  EPAAMKNRQVIEWDKDDIDELKFMKVDCLALGMLTCMKKSYDMLAEHKGVAMDMAGIPAD 555

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D  TY ++    T+G+FQ+ES      L  ++P    DI   V++ RPGPI  D +  Y 
Sbjct: 556  DKPTYAMICKADTVGVFQIESRAQMSMLPRLRPANFYDIAIEVAIVRPGPIQGDMVHPYL 615

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             RK+G E I   +  +  +L  T GV ++QE  M++A + +G+S  EAD +RR++   K 
Sbjct: 616  RRKHGLEPIEYPNEAVRDILGRTFGVPLFQEHAMKVAVVCAGFSDDEADHVRRSLATFKH 675

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               +   +++  +G    G S   +  +   L  F  YGF +SHA ++A+I+Y ++WMK 
Sbjct: 676  TGGVKNFRDKMYAGMIGRGYSPEFSERLINQLEGFGSYGFPESHAISFALIAYASSWMKC 735

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDNRI 835
            H+P  FL A +  +        +  +DAR+  + + P  VN    D  +      G   +
Sbjct: 736  HHPDVFLCALLNSQPMGFYAPAQLVRDAREHGVDVRPVCVNASRYDCTLEETGTPGKLAV 795

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA-LDCF 894
                  IKG+    A  ++ A  ++ + S+ +         L    L  L  A A     
Sbjct: 796  RLGFRMIKGMSEDEAAVLVAAREER-YGSIREVWR---HSGLPVSTLVRLAEADAFFPSL 851

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            G SR + L +L  ++                +F   + T    + L+  +  +  V    
Sbjct: 852  GQSRREALWALKGMRDT-----------PLPLFDGPE-THEPAVVLKAMTAGSEVV---Q 896

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +   +G     HP+   +  L + GI   + + A    ++  +A MV+ +Q+  T KG  
Sbjct: 897  DYGHVGLSLRRHPVSFLRGELSERGIVTCKAANARKDKSHALVAGMVLVRQRPGTAKG-- 954

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + ++T  +         +
Sbjct: 955  VTFMTIEDETGIANVVIW 972


>gi|114705792|ref|ZP_01438695.1| putative dna polymerase iii alpha chain protein [Fulvimarina pelagi
            HTCC2506]
 gi|114538638|gb|EAU41759.1| putative dna polymerase iii alpha chain protein [Fulvimarina pelagi
            HTCC2506]
          Length = 1189

 Score =  776 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/1055 (24%), Positives = 449/1055 (42%), Gaps = 75/1055 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F  +   S +S L GA     +           + + D N +   +   Q A   G+  
Sbjct: 8    PFAEIGTMSCFSFLRGASQPEELTVTARRLGLGGLGLADHNTVAGVVRAYQVAREEGLA- 66

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
                         L  +          P ++       G+ RL  L+S   L  + K   
Sbjct: 67   -------FAPGTRLVFS-------DGTPDVLAYPRNRAGWGRLCRLLSLGNLRAE-KGRC 111

Query: 130  RICLSWLQEIGTE-GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             + L+ L E G E    +L   + G  +     +        L T +  F DR+ +  + 
Sbjct: 112  ELFLTDLLEWGEEINCAVLAPMAIGHGEGTIAESEIGKLAAVLNTLRSAFPDRVRLAARY 171

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             H G+D+ R +++  LA T   PL+ATN  L  + +     DV+ A+     +    R  
Sbjct: 172  AHEGFDQRRLARLDDLAKTCRTPLLATNEPLAHAPQRRRLADVMTAIREHVPLDGAGRHL 231

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK   E+  +FS  P A+E         SF L+      P     E   + + 
Sbjct: 232  AMNAERHLKPGHEIARLFSSCPHAVEEASRFFSELSFDLKSLKYEYP----DEALGLTRS 287

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ELR+ A  G   R   G  A         +R++ EL +IA +++  YFL V   + +
Sbjct: 288  PKDELRHLAYEGANWRYPDGVPA------SVTERIEHELEIIAELEYEPYFLTVHHIVNF 341

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I +  GRGS A SV  Y + +T++ P R  LLFERF++PDR   PD DIDF  +R
Sbjct: 342  ARSKGI-LCQGRGSAANSVVCYCIGVTEVSPERAGLLFERFISPDRREPPDIDIDFEHER 400

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+   YG +  A   T  + +A++ALR+VG+A  +    +  L   +    +  
Sbjct: 401  REEVIQYIFEHYGRDNAALAATVITYRARSALREVGKAFSLSEDTIAALAGSVWGYHSSD 460

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            V       +++     +ADP    +++ ++++ G  RH S H  G VI    + + VP+ 
Sbjct: 461  VG----EREAKAAGLSMADPMTAAVMKYAEEISGFPRHLSQHVGGFVITRGRIDETVPIL 516

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSL--IPF 603
                    + +++   I++ G++K D L L  L+ ++++ D L    G ++ L+      
Sbjct: 517  HSTMDGRTIIEWDKDDIDELGILKIDILALGMLSCIRRAFDLLKVHYGREITLAELSEGQ 576

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            DD  TY ++    TLG+FQ+ES      L  ++PD   D++  V++ RPGPI  D +  Y
Sbjct: 577  DDPATYRMIQRADTLGVFQIESRAQMTMLPKLKPDKFYDLVIEVAIVRPGPIQGDMVHPY 636

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              RK G E++    P +  +L  T GV ++QEQ M+IA + +G++  EAD LRRAM   +
Sbjct: 637  LRRKMGLEQVTYPKPELAEVLGRTLGVPLFQEQAMRIAIVAAGFTPGEADKLRRAMATFR 696

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                +   +++ + G    G     A   F+ +  F +YGF +SHAA++A++ Y + W+K
Sbjct: 697  RVGTIHTFRQKMVEGMVARGYEPDFAERCFKQIEGFGEYGFPESHAASFALLVYASCWLK 756

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-------- 832
             HYP  F AA +  +        +  +DAR+  +   P SVN    D  +          
Sbjct: 757  CHYPDVFAAALLNAQPMGFYAPAQIVRDAREHGVSFRPVSVNESGWDQSLEKEPFDASKI 816

Query: 833  --------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                          + +      +KG+       ++E      +DS+ D   R   K   
Sbjct: 817  EDRHAGMRPAIWSAHAVRLGFRQVKGLSEPDMAILVERRGAG-YDSVRDVWLRTGLK--- 872

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            R V+E L  A A    G SR   L ++  +             +   +F         + 
Sbjct: 873  RAVIERLAEADAFASLGLSRRDALWAVRALDPKG-------AAERLPLFEGAAAKDLQRE 925

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
                           N+ R +      HP+   + IL +  I+          G+ + ++
Sbjct: 926  PDAFLPPMRPGEEVVNDYRFISLSLKAHPVSFVREILTERRIRTNRSLETLRSGSQVDVS 985

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +V+ +Q+  + KG  + ++T  + +       +P
Sbjct: 986  GLVLVRQRPGSAKG--VIFITIEDESGTANIIVWP 1018


>gi|121997266|ref|YP_001002053.1| DNA polymerase III subunit alpha [Halorhodospira halophila SL1]
 gi|121588671|gb|ABM61251.1| DNA polymerase III, alpha subunit [Halorhodospira halophila SL1]
          Length = 1044

 Score =  776 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/1051 (25%), Positives = 443/1051 (42%), Gaps = 94/1051 (8%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              SP++  L   S+++   GA     ++ + A     A+AITD  ++  A+   Q A + 
Sbjct: 7    TTSPAYAELHCLSAFTFRRGASQPEELVARAAQLDYHALAITDECSVAGAVRAWQAARSH 66

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+  I+G +L                     P +VLL  T + Y +L  L+S        
Sbjct: 67   GLHLIVGTELRPADG----------------PRVVLLAPTRQAYGQLCALISLARGR-AA 109

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            K    +    L     + L +L        D      +   A+ R   F + F  R Y+ 
Sbjct: 110  KGGYHLTREDLDSGAPDCLGLLIP------DAPHQEGTETEAQTR--WFARRFAGRGYLA 161

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNN-SLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            ++   G D     ++++               +   +      HD L A+ H   V++  
Sbjct: 162  VELLGGPDDAARCRMLEARAAAAGLPAVAATGAEMHTRGRRALHDTLTAIRHGRPVAEVT 221

Query: 245  RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                +  +H+L+ R  +   +      L  +  IA RC+F L       P  +  E    
Sbjct: 222  AHLASNGEHHLRRRPALAERYPHH--LLAQSTAIADRCTFSLDELRYEYPEEVVPEG--- 276

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                   LR     G   R   G  A        +   + EL +IA + +  YFL V D 
Sbjct: 277  -TTPTAHLRQLVETGARRRYPDGVPA------AVQAGYERELAIIAELGYEHYFLTVHDL 329

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +A+   I +  GRGS A SV  + L IT++DP   S+LFERF++ +R   PD D+DF 
Sbjct: 330  VAFARGRGI-LCQGRGSAANSVVCFCLGITEVDPAHQSVLFERFVSRERGEPPDIDVDFE 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR+EVI+Y+  +YG  R A   T  + + ++A+RDV +AL +    V+RL K +    
Sbjct: 389  HHRREEVIQYIYQRYGRHRAALAATVIAYRPRSAVRDVAKALGLERESVERLAKGLQPWD 448

Query: 484  AHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                   + A+D + R+A L    P   RL  ++ +L G  RH S H  G VI   P+++
Sbjct: 449  ------HSAANDEQLRQAGLNPDGPIARRLRILAGELLGFPRHLSQHVGGFVIARCPITE 502

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            LVP+         V Q++   +E  GL+K D L L  L++++++ + +   RG    L+ 
Sbjct: 503  LVPVEPAAMDGRTVIQWDKDDLEALGLLKVDVLALGMLSVIRRAFELIHHWRGHAWTLAT 562

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P  D  TY ++    TLG+FQ+ES      L  M+P C  D++  +S+ RPGPI  D +
Sbjct: 563  LPPADPATYAMIQRADTLGVFQIESRAQMAMLPRMRPRCFYDLVIEISIVRPGPIQGDMV 622

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R+ G E +      +  +L+ T GV I+QEQ M++A + +G++  EAD LRR+M 
Sbjct: 623  HPYLRRREGSEPVDYPSEEVRGVLERTLGVPIFQEQAMELAVVAAGFTPDEADRLRRSMA 682

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              + K  +   +ER I G  + G S   A  ++  +  F +YGF +SHAA++A++ Y +A
Sbjct: 683  AWRKKGGLAPLRERLIEGMRERGYSSAYAERLYRQIEGFGEYGFPESHAASFALLVYASA 742

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------ 831
            W+K H P  F AA +  +        +  +D R+ ++ + P  V        +       
Sbjct: 743  WLKCHEPAAFAAALLNSQPMGFYAPAQIIRDTREHDVAVRPVDVRFSEPACTLEPPQPPD 802

Query: 832  -------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
                      +   L  I+G+ T  A  I  A +  PF  + D   R    + +   L  
Sbjct: 803  SPSGAGSQPALRLGLNQIRGLSTAGAERIAAARSRAPFTGVNDLKRRAHLSRADIHAL-- 860

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK-- 942
                        +R   L+ +   ++ A W           + A E          E   
Sbjct: 861  ------------ARADALRGIAGHRRAASWAA---------LGADEGTALIPPPPAEAGR 899

Query: 943  --FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
               +    S     +    GF    HPL   +  LR    +   E      G +IR A +
Sbjct: 900  PSLAPARESQAVLADYASTGFTLRRHPLAFLRRQLRARRYRSAAELATAEDGRSIRAAGL 959

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            V+++Q+  +  G  I +VT  +         
Sbjct: 960  VINRQRPGSAGG--ITFVTLEDETGRINLVV 988


>gi|225851611|ref|YP_002731844.1| error-prone DNA polymerase [Brucella melitensis ATCC 23457]
 gi|256264881|ref|ZP_05467413.1| error-prone DNA polymerase [Brucella melitensis bv. 2 str. 63/9]
 gi|225639976|gb|ACN99889.1| DNA polymerase III, alpha subunit [Brucella melitensis ATCC 23457]
 gi|263095335|gb|EEZ18962.1| error-prone DNA polymerase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408081|gb|ADZ65146.1| error-prone DNA polymerase [Brucella melitensis M28]
 gi|326537797|gb|ADZ86012.1| DNA polymerase III, alpha subunit [Brucella melitensis M5-90]
          Length = 1077

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/1049 (24%), Positives = 436/1049 (41%), Gaps = 77/1049 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  +   S++S L GA     ++++  A     I I D N L   +    +        
Sbjct: 3    PYFEMAAASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQ-------- 54

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                  DI  +   ++    +  F    P +V+       Y +L  L++        K  
Sbjct: 55   ----WKDIRKESGFRLFIGCRLSFIDGTPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGE 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
              +  + L     +  I +        D A           RL    +     +++ L  
Sbjct: 111  CHLEWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTM 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R  
Sbjct: 161  PHQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLL 220

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK   EMV +F D PEA+  T +     +F L       P           K 
Sbjct: 221  EKNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KT 276

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L +    G         I         +  ++ EL +IAR+++  YFL V D +  
Sbjct: 277  AQQHLYDLVWEGAVRHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTH 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +R
Sbjct: 332  AREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHER 390

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       
Sbjct: 391  REEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGG 450

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+ 
Sbjct: 451  IDRQHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIG 506

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VDLSL 600
                      +++   I++ GL+K D L L  LT ++K+ D + Q   +      + L+ 
Sbjct: 507  PAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLAS 566

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P  D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 567  LPRKDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMV 626

Query: 659  VVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
              Y  R++G+E      P         +  +L +T+GV ++QEQ M+IA   + ++  EA
Sbjct: 627  HPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEA 686

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LRRAM   +    +   +++ I G    G  +T A N F  +  F +YGF +SHAA++
Sbjct: 687  NQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASF 746

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  
Sbjct: 747  AHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNI 806

Query: 830  VG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +         +      I G        ++    + P+ ++ED   R+     +RR    
Sbjct: 807  LEETPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRLRL---DRRAFTL 862

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  A A       R   L ++  +            ++   +F     +   +    K  
Sbjct: 863  LADADAFGSLDIDRRAALWAVRRLP----------NDETLLLFRAAAASELAQEPRTKLP 912

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
               +S     +         GHPL   +  L   G+           G  +++A +V  +
Sbjct: 913  EMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVR 972

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG  + ++T  +         +P
Sbjct: 973  QRPGSAKG--VVFLTIEDETGIANIVIWP 999


>gi|218247224|ref|YP_002372595.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 8801]
 gi|257061441|ref|YP_003139329.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 8802]
 gi|218167702|gb|ACK66439.1| DNA polymerase III, alpha subunit [Cyanothece sp. PCC 8801]
 gi|256591607|gb|ACV02494.1| DNA polymerase III, alpha subunit [Cyanothece sp. PCC 8802]
          Length = 874

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/828 (37%), Positives = 475/828 (57%), Gaps = 63/828 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  LN ++D+    + PAIA+TD   ++ A+E  +     GI+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLNALVDRAVELEMPAIALTDHGVMYGAIELMKVCRNKGIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +  +D        K         V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62  IIGNEMYVINEDIEVNKRHRK------YHQVVLAKNTQGYKNLVKLTTISHLKGIQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L +   EGLI+ +    G + ++     ++ A+     ++KLF D  Y+ 
Sbjct: 116 FARPCINKELLTQYH-EGLIVTSACLGGEVPQSILAGDTKQAKTVAKWYQKLFKDDYYLE 174

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR    ++V++A    + ++ATN+S F+S  D EAHD L+ +    ++++  
Sbjct: 175 IQDHGSQEDRIVNRELVKIARDLGIKIIATNDSHFISCYDVEAHDALLCIQTGKLITEDK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFIL-QVHAPILPRFIE 297
           R R +   YLK+  EM  +F D      + EA+ NT+E+A +          P +P +  
Sbjct: 235 RLRYSGTEYLKSAEEMALLFRDHLPDDVIEEAINNTLEVADKIEPYKNIFGEPRIPNYPV 294

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                     ++ +   A  GL  RL     ++G  +  Y++RL++EL ++ RM FS YF
Sbjct: 295 PSG----HTPDSYVEEIAWEGLLERLK--CRSRGEISDVYKERLEYELKMLQRMGFSTYF 348

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           L+V D+I++A+ N IPVGPGRGS AGS+ AY L IT+IDP+   LLFERFLNP+R SMPD
Sbjct: 349 LVVWDYIKYARDNGIPVGPGRGSAAGSLVAYCLKITNIDPVHHGLLFERFLNPERKSMPD 408

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D DFC +RRDE+I+YV  KYG   VAQIITF  + +KA L+DV R L +PYS+ D++ K
Sbjct: 409 VDTDFCIERRDEMIKYVTEKYGEANVAQIITFNRMTSKAVLKDVARVLDIPYSESDKMAK 468

Query: 478 LIPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
           +IP     P  L+ +  D      F+E    DP V R L+++ ++EG  +    HAAG+V
Sbjct: 469 MIPVSRGKPTKLKVMISDETPCPEFKERYDNDPQVRRWLDMAIRIEGTNKTFGVHAAGVV 528

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
           I   PL ++VP+ ++      +TQ+ M+ +E  GL+K DFLGL+ LT +QK+ + + Q R
Sbjct: 529 ISSEPLDEIVPLQKN-NEGSVITQYFMEDLESLGLLKMDFLGLRNLTTIQKTAELIKQNR 587

Query: 593 GVKVDLSLIPFDD-------------------HETYHLLTTKGTLGIFQLESSGMRQALE 633
            V++DL  +P ++                    +T+ LL      GIFQLESSGM+Q ++
Sbjct: 588 KVELDLDQLPLEERKALQIIAKGTAKKLPEDIQKTHKLLERGDLEGIFQLESSGMKQIVK 647

Query: 634 GMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            ++P  IEDI ++++LYRPGP+D   I  + NRK+G+E I   H L++P+LKET  V++Y
Sbjct: 648 DLKPSGIEDISSILALYRPGPLDAGLIPKFINRKHGQEPIKYEHRLLEPILKETYAVLVY 707

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QEQ+M++AQ L+GYSL EAD+LRRAMGKK   EM+K +E+FI GA+KNG+ K IA N+F 
Sbjct: 708 QEQIMKMAQDLAGYSLGEADLLRRAMGKKKISEMEKHREKFIEGAAKNGVIKEIAENLFT 767

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            + +FA+Y            +SY T  +   Y    +   +   +D  
Sbjct: 768 QMVQFAEYC-----------LSYDTEILTVEYGAIPIGKVVEENIDCT 804


>gi|254487325|ref|ZP_05100530.1| DNA polymerase III, alpha subunit subfamily, putative [Roseobacter
            sp. GAI101]
 gi|214044194|gb|EEB84832.1| DNA polymerase III, alpha subunit subfamily, putative [Roseobacter
            sp. GAI101]
          Length = 1103

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/1049 (24%), Positives = 448/1049 (42%), Gaps = 83/1049 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +V L V S +S L  A    ++          A+ I D N L   +    +A  A I+P
Sbjct: 25   PYVELGVASCFSFLRAASDAVDLTATANLLGYDAMGIADRNTLAGVVRVYSEASKAKIRP 84

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-----Q 124
            I+G                 +        ++      + Y RL  L+S+  + D     Q
Sbjct: 85   IVGA----------------RLVLMCGTDLLAYPRDRDAYARLSTLLSKGKMADVDGGWQ 128

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K +  + L  + +   +  +++       +  A          + L   + +    LY 
Sbjct: 129  EKGTTHLTLEMVADHAEDLELIVMPPEELQVFEAGL----PRLLRALPGLRHMGAAYLY- 183

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                 RG D  R +Q+ +LA  H L ++ATN+ L+         DV+  +     +    
Sbjct: 184  -----RGDDVARINQLDRLAKAHGLGILATNDVLYHGPSRRPLQDVMTCIREGRTIETAG 238

Query: 245  RP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                   + YLK  SEM  +F+  P A+  T ++A  C+F L       P  I  E    
Sbjct: 239  FLLEANAERYLKPPSEMCRLFAAWPHAIAATRKLADACTFSLGDLKYEYPHEIVPEG--- 295

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +  + EL      G   R  QG   +          ++ E  +I   K + YFL + D 
Sbjct: 296  -RTAQEELERLTWKGAAERYPQGVPDR------IEAVIEKEFALIRSKKIARYFLTINDI 348

Query: 364  IQWAKKNNIP--VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +++A+++  P  +  GRGS A S   + L IT +DP    +LFERFL+ +R   PD D+D
Sbjct: 349  VRFARQDAQPPILCQGRGSAANSTVCFCLGITAVDPAEHDVLFERFLSEERDEPPDIDVD 408

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EVI+Y+  KYG  R     T    + ++A+R+VG+A+ +      +L   +  
Sbjct: 409  FEHERREEVIQYMYAKYGRHRAGLCATVIHYRPRSAIREVGKAMGLSEDVTSKLASTVWG 468

Query: 482  DPAHPVSLQAIADDSRFREAR--LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                  S +A   D R +EA   L+DP + R+L +++++ G+ RH S H  G ++ +RPL
Sbjct: 469  ------SFEASVGDDRVKEAGMDLSDPYLRRVLMLAREMTGMPRHLSQHVGGFILTERPL 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DL 598
            +++VP+      D    +++   I+  G+ K D L L  LT + K  D +        +L
Sbjct: 523  TEMVPIGNGAMPDRSFIEWDKDDIDALGIFKVDILALGMLTCIAKCFDLMRAHYNDDKEL 582

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
            + +P DD  TY +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D
Sbjct: 583  ATVPPDDDATYDMLCAGDSLGVFQVESRAQMAMLPKLRPRVFYDLVIEVAIVRPGPIQGD 642

Query: 657  NIVVYNNRKNGKEKIVS-------IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
             +  +  R+  +E +             +  +L  T GV I+QEQ M+IA   + ++ +E
Sbjct: 643  MVHPFLRRRQRQEGVSYPAPGPEHPQDELLKILGRTLGVPIFQEQAMKIAIDAAQFTPTE 702

Query: 710  ADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            A+ LR+AM   + +  ++  + + +   +K G     A   F+ +  F +YGF +SHAA+
Sbjct: 703  ANELRKAMATFRSRGTIETLQTKMVGRMTKRGYDPEFAQRCFDQIKGFGEYGFPESHAAS 762

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +A + Y ++WMK HYP  F  A +  +        +  +DAR+  +++    V+    + 
Sbjct: 763  FAKLVYVSSWMKCHYPAAFACALLNSQPMGFYAPAQIVRDAREHGVEVRGVDVDFSDWNC 822

Query: 829  KVGD----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
             +        +   +  + G+    A  IM+A  D+P+  + D  +R    +   R L  
Sbjct: 823  TLEPSSDGFALRLGMRQVDGMREDAAARIMDAR-DRPYVDVADLKTRARLDRGQIRKL-- 879

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
               A A+   G  R Q L             +  +      IF +               
Sbjct: 880  -AEADAMRTMGIDRRQALW----------QAQALKDAPDLPIFTYADAVDEGAEPPVLLP 928

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                + +   + + L      HP+  ++  LRK G     +      G  + LA +V+ +
Sbjct: 929  AMPQAEQVVADYQTLRLSLKAHPISFFRSSLRKQGFIAAGDLPGLNHGRKVSLAGLVLVR 988

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG  + ++T  +         +P
Sbjct: 989  QKPGSAKG--VCFITLEDETGVANLVIWP 1015


>gi|294675695|ref|YP_003576310.1| error-prone DNA polymerase [Rhodobacter capsulatus SB 1003]
 gi|294474515|gb|ADE83903.1| error-prone DNA polymerase [Rhodobacter capsulatus SB 1003]
          Length = 1116

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/1066 (25%), Positives = 452/1066 (42%), Gaps = 92/1066 (8%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-- 63
            + S ++  L V S+++ L GA     ++ + A     AIAITD N+L   +         
Sbjct: 10   QNSTAYAELCVTSNFTFLTGASHPEELVARAAELGLAAIAITDRNSLAGVVRAFSALKTL 69

Query: 64   -AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV------------------S 104
                    I      D      +      P P  P +  L+                  +
Sbjct: 70   RQETEALRIRSASRTDPSSRQSLDPAAPLPRPETPDLPRLIIGTRLALRDCATEFLALPT 129

Query: 105  TAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS 164
                Y+RL +L++    L + +     C   L +        L  G +G I  A      
Sbjct: 130  DRPAYERLSQLLT----LGKRRAGKGDCALNLDD--------LVAGGAGLILIALPPPEL 177

Query: 165  QVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEE 223
             +A   L   ++ F  ++++     + G D+        LA     P+VA  + L     
Sbjct: 178  ALALAPLHRLQRQFPGQVFLGAAPRYDGTDQAWFRGCADLALRASTPMVAVGDVLMHRAA 237

Query: 224  DYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
                 DVL  +     +     R     +  LK  +EM  +F   P A+  T+EIA RC+
Sbjct: 238  RRPLADVLTCLRAGLTIDAIGTRALPNAERRLKGPAEMARLFRHHPAAIRRTLEIAARCA 297

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
            F L   +   P       +D  +  +  L   A  GL  R  QGA  +        Q L 
Sbjct: 298  FDLAELSYDYP------GEDDTEPPQARLERLAQEGLARRYPQGASER------VHQLLA 345

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             EL ++  + ++ YFL V D +Q+A+   I +  GRGS A S+  Y L ITD+ P    +
Sbjct: 346  KELGLVGELGYAPYFLTVQDIVQFARSRGI-LCQGRGSAANSILCYLLGITDVSPDMIGM 404

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            +FERF++  R   PD D+DF  +RR+EVI+++  KYG +R     T    + +AA+R+VG
Sbjct: 405  VFERFISRHRGEPPDIDVDFEHERREEVIQWIYEKYGRDRAGLCATVIHFRTRAAIREVG 464

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL---LEISQKLE 519
            + + +       L   I             AD +R RE  L +P   RL   + +  ++ 
Sbjct: 465  KVMGLSADVTAALAGQIWGLSNRG------ADPARLREIGL-NPEDRRLALTIRLISEII 517

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G  RH S H  G VI    L  L P+           +++   I+  G++K D L L  L
Sbjct: 518  GFPRHLSQHVGGFVITRGRLDALCPIENAAMEGRTCIEWDKDDIDALGILKVDVLSLGML 577

Query: 580  TLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T L+KS D L   +G+++DL+ +P +D  TY +LT    +G+FQ+ES      L  M+P 
Sbjct: 578  TCLRKSFDLLERHKGLRLDLAKVPQEDPATYAMLTRADAVGVFQVESRAQMNFLPRMKPA 637

Query: 639  CIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
               D++  V++ RPGPI   +   Y  R+ G E      P +  +  +T GV ++QEQ M
Sbjct: 638  TFYDLVIEVAIVRPGPIQGGMVKPYIRRRQGLEAPEPFGPALAAVTAKTLGVPLFQEQAM 697

Query: 697  QIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            QIA + +GYS  EAD LRR++   +    +   ++RF+SG ++ G    +A   F  +  
Sbjct: 698  QIAVVGAGYSAEEADQLRRSLASFRRMGTIGAHRDRFVSGMTERGYPLAVAEACFAQIEG 757

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FADYGF +SHAAA+A+++Y ++W+K H+P  F  A +  +        +  +D R+  ++
Sbjct: 758  FADYGFPESHAAAFAMLTYVSSWLKCHHPEIFACALLNSQPMGFYAPAQIVRDLREHGVE 817

Query: 816  IMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
            + P  VN    D  +     G   +      IKG     A  I+ A  +  +  +E    
Sbjct: 818  VRPICVNRSDWDNALERRADGRLALRLGFRQIKGFRAEDAGWIVAARGNG-YPDVESLWL 876

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            R          LE L  A A    G +R   L ++  I          R  K   +FA+ 
Sbjct: 877  RAGLL---PSPLERLAEADAFAGLGLTRRDALWAVRAI----------RAPKPLPLFANP 923

Query: 931  ---KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +G     +TL    +    V    +   L      HP+++ +P L  +      + +
Sbjct: 924  LDGEGGIEPAVTLPPMHLGEEVV---EDYIALRLTLRAHPMELLRPGLPGL---TCHDRL 977

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T       +  +V+++Q+  T  G  + ++T  +         +P
Sbjct: 978  VTAPLQRTAVCGLVITRQRPGTASG--VIFLTLEDETGVANIVVWP 1021


>gi|121583266|ref|YP_973702.1| DNA polymerase III, alpha subunit [Polaromonas naphthalenivorans CJ2]
 gi|120596524|gb|ABM39960.1| DNA polymerase III, alpha subunit [Polaromonas naphthalenivorans CJ2]
          Length = 1041

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/1036 (25%), Positives = 452/1036 (43%), Gaps = 77/1036 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L+  S+++ L GA     ++ +       A+A+TD  +L   +     A  AG+  
Sbjct: 15   DYAELRCISNFTFLNGASRPEELVLRARELGYRALALTDECSLAGIVRAHGAAREAGLAL 74

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q  +                    ++ +LV    GY  L + ++R+    + K   
Sbjct: 75   LVGAQFLVA--------------DDAPFTLTVLVCNLNGYGNLCQYITRLRRSSE-KGHY 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL---LTFKKLFGDRLYVNL 186
            R+    +Q       ++L                +  AE+ L         F  R +  +
Sbjct: 120  RLARDSIQGADLVDCVVLVSP-----------GRTSSAEQLLQLGRWSLLHFTGRCWFGV 168

Query: 187  QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD- 244
            +  R   D     ++ +++    + LVA  +            DVL A      ++    
Sbjct: 169  ELLRRLGDAMWLHRMREVSAATAIALVAVGDVCMHVRSRKPLQDVLTATRLGKRLTDCGF 228

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              +   + +L++R  +   +      L  T+++A  C+F L       P+ +    +   
Sbjct: 229  ELQSNAERHLRSRLRLAQTYP--AALLAETLKVASHCNFSLDELKYQYPQEVVPPDE--- 283

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  LR     G   R   G  A+       +Q+++ EL +I  +++  YFL V D +
Sbjct: 284  -TPAAYLRRMTYEGAGRRWPHGIEAQ------VQQQIEHELALIGELRYEPYFLTVYDIV 336

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+  +I +  GRGS A SV  Y L +T++DP R S+LFERF++ +R   PD DIDF  
Sbjct: 337  AFARSRHI-LCQGRGSAANSVVCYCLGVTEVDPARMSVLFERFISRERNEPPDIDIDFEH 395

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI+Y+  KYG +R A   T  + + ++A+RDVG+AL    + +D L K       
Sbjct: 396  ERREEVIQYLYQKYGRDRAALTATVMTYRPRSAIRDVGKALGFDLATLDLLAKSHQWWDG 455

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              V  + +     F +    D +V +L+ ++ +L G  RH S H  G V+    LS++VP
Sbjct: 456  GQVDAERLTALGLFPD----DLAVQQLMLLTTQLMGFPRHLSQHTGGFVLTRGLLSRMVP 511

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPF 603
            +         V Q++   ++  GL+K D L L  LT L+K+L+F+ A+RG   ++  IP 
Sbjct: 512  IENASMPGRTVIQWDKDDLDATGLLKVDVLALGMLTALRKALEFVGARRGHSFEMQDIPP 571

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661
            +D  TY ++    T+G+FQ+ES   +  L  +QP C  D++  V++ RPGPI   +   Y
Sbjct: 572  EDPATYEMMCQADTVGVFQIESRAQQGMLPRLQPRCFYDLVIEVAIVRPGPIQGGMVHPY 631

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R+ G+E +      +   L  T GV ++QEQVMQ+A L +G++  EAD LRRAM   K
Sbjct: 632  LARRQGREAVSYPSEALREALGRTLGVPVFQEQVMQLAILAAGFTPGEADGLRRAMAAWK 691

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K  + +  +R + G +  G  K  AV IFE +  F++YGF +SHAA++A++ Y +AW+K
Sbjct: 692  RKGGLAQYYDRIVGGMTARGYEKEFAVAIFEQIKGFSEYGFPESHAASFALLVYASAWLK 751

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----NRIY 836
               P  FLAA +  +        +  QDAR+  +++ P  V    +D  + D      + 
Sbjct: 752  RAEPAAFLAALLNAQPLGFYAPSQLVQDARRHGVEVRPIDVMASDIDATLEDLPQVPAVR 811

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  + G+G   A  I+ A  D PF+S ED   R D      ++L +   + AL     
Sbjct: 812  LGLRLVAGLGRLAAARIVAARMDCPFESAEDLSMRADLALHEMKLLAA---SDALASLSG 868

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R Q +     +      +                        L +            + 
Sbjct: 869  HRRQQVWDASALHAAPALLR----------------AAPVDEELLELPEAPEGEAIGWDY 912

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
               G     HP+ + +  L K       E      G  +R   MV  +QQ     G+   
Sbjct: 913  AATGLTLRRHPMALLRARLVKHRFLSSGELREHPDGQMVRTCGMVTLRQQPPAANGT--V 970

Query: 1017 WVTFSEPAKEYEANFF 1032
            +V+  +     +   F
Sbjct: 971  FVSLEDEDGAIQVIVF 986


>gi|319780655|ref|YP_004140131.1| DNA polymerase III subunit alpha [Mesorhizobium ciceri biovar
            biserrulae WSM1271]
 gi|317166543|gb|ADV10081.1| DNA polymerase III, alpha subunit [Mesorhizobium ciceri biovar
            biserrulae WSM1271]
          Length = 1115

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/1050 (24%), Positives = 444/1050 (42%), Gaps = 91/1050 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +    + S++S L GA     ++         AI + D N +   +   Q+A    +  
Sbjct: 8    PYAEFGIQSNFSFLRGASKPEELVVAAKLLGFSAIGLADRNTVAGVVRAWQQAKVEKLSY 67

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
              GC+L  D                  P I+      +G+  L  ++++  L D+ ++  
Sbjct: 68   HPGCRLVFD---------------DGTPDILAYPQDRKGWGHLCRMLTQANLRDENEKGA 112

Query: 130  RICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             +      L+      L +L G S+G  D                  K  FG  L + + 
Sbjct: 113  TLLQRGDLLEWGDLMSLAVLPGLSTGAQDSLALLG----------ELKGRFGRNLRLGVS 162

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
              + G DR+R  Q   LA +  +PL+ATN+ L+ + E     DVL A+  +T V++   +
Sbjct: 163  PDYAGNDRFRIEQAATLAESAGIPLMATNDVLYHTAERRPLQDVLTAIRLNTPVAEVGLQ 222

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +LK   EM  +F   P+AL  T+  A+  +F L       P    +     Q 
Sbjct: 223  LSANAERHLKPPMEMGRLFRRHPQALAETLRFAQELTFSLGDLQYNYPDEPTESGLGPQA 282

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                EL   A  G   R   G            +R++ EL +I R+ ++ YFL V D ++
Sbjct: 283  ----ELARLAREGAANRYPAGV------PDSVTKRIEEELALIERLNYARYFLTVYDIVK 332

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A SV  + + IT++ P +   LFERF++ +R   PD D+DF  +
Sbjct: 333  FARSKDI-LCQGRGSAANSVVCFCIGITEVGPEKIDSLFERFISEERNEPPDIDVDFEHE 391

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            +R+ VI+Y+  KY  +R A      S + ++ALR+V +A+ +       L   I      
Sbjct: 392  KRETVIQYIYEKYSGKRTALAAAVISYRGRSALREVSKAMGLSEDVRASLSGSIWGWSTS 451

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +    ++R       DP    ++E + ++ G  RH S H  G VI    L ++VP+
Sbjct: 452  ELGEK----EARAGGLDRTDPVSRHVMERANEIMGFPRHLSQHVGGFVITRDRLDEIVPI 507

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--------VD 597
             +    +  + +++   ++   ++K D L L  LT LQ++   L                
Sbjct: 508  VKTAMDERKMVEWDKDDLDAVKILKVDVLALGMLTCLQRAFTLLTDHYPNARDEYGQPYV 567

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            L+ +P +D + Y ++    TLG+FQ+ES      L  ++PD   D++  V++ RPGPI  
Sbjct: 568  LATLPPEDRQVYKMICRADTLGVFQIESRAQMSMLPRLKPDNFYDLVIEVAIVRPGPIQG 627

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D +  Y  R+ GKE+     P ++ +LK+T GV ++QEQ M IA +  G+   EAD LRR
Sbjct: 628  DMVHPYLRRRQGKEQAEYQKPELEAILKKTLGVPLFQEQAMNIAIVAGGFKPGEADELRR 687

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AM   K    +   ++R I+G    G +K  A   F+ +  F +YGF +SHAA++A++ Y
Sbjct: 688  AMATFKRTGTIGNYRDRMINGMVGKGYTKDFAERCFKQIEGFGEYGFPESHAASFALLVY 747

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831
             + W KT YP  F AA +  +     +  +  +DA    + I    VN    D  +    
Sbjct: 748  ASCWFKTFYPDVFCAAILNSQPMGFYQPAQLVRDASDHGVDIRDVDVNFSVWDCTLEKAP 807

Query: 832  -------------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                                + +      IKG+        +E      + S+ D   R 
Sbjct: 808  FDPARILPRHAEMRDVIETKHAVRLGFRQIKGLSKERMEAFVEGRGSG-YVSVRDVWLR- 865

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
                L+   +E L  A A    G  R + L ++  +       +     +   +F     
Sbjct: 866  --SGLDVGEIEKLAQADAFRSLGLDRREALWAVRAL-------DGKSAAERLPLFDQPAL 916

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               +     +           ++ R LG     HP+   +  L + G+       +   G
Sbjct: 917  RLRELEPETRLPKMPLGEHVIHDYRALGLSLKAHPVAFLRERLDRAGVIPNANLPSVRDG 976

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
              + +A +V+ +Q+    KG+ I ++T  +
Sbjct: 977  RRVSVAGLVLVRQRPG--KGNAI-FLTLED 1003


>gi|167966837|ref|ZP_02549114.1| error-prone DNA polymerase [Mycobacterium tuberculosis H37Ra]
          Length = 955

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/909 (29%), Positives = 452/909 (49%), Gaps = 45/909 (4%)

Query: 3   QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           + +  S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A
Sbjct: 38  ERVGSSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAA 97

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               ++ + G       + +L  T + + P P  P +++L    EGY+RL   ++  +L 
Sbjct: 98  AELDVRTVFGA------ELSLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLA 151

Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-R 181
              K   R     L E       +LTG   G + +A        A++ L      F   R
Sbjct: 152 GGEKGKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSR 211

Query: 182 LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TV 239
           + + L  H    D  R + +  LA    + +VAT  + F           + A+    ++
Sbjct: 212 VSIELTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSL 271

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            S           +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +
Sbjct: 272 DSAAGWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPD 331

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                  E++ LR+  +AG   R      A   ++     +++ EL VIA+++F GYFL+
Sbjct: 332 G----HTEDSWLRSLVMAGARERYGPPKSAPRAYS-----QIEHELKVIAQLRFPGYFLV 382

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V D  ++ + N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D
Sbjct: 383 VHDITRFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDID 441

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           ID   D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K +
Sbjct: 442 IDIESDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQV 501

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            +                  +A   D   +++++++ ++  L RH   H+ G+VI DRP+
Sbjct: 502 SHWTG---------------QADDVDGIPEQVIDLATQIRNLPRHLGIHSGGMVICDRPI 546

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
           + + P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VDL
Sbjct: 547 ADVCPVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDL 606

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
           + +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   
Sbjct: 607 ARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGG 666

Query: 659 --VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
               Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRA
Sbjct: 667 SVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRA 726

Query: 717 M-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           M  K+  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + +
Sbjct: 727 MGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVF 786

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +AW K H+P  F AA +  +       +    DAR+  + +  P VN         +  
Sbjct: 787 YSAWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAG 846

Query: 835 I--YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
                 L A++ +G   A  ++    A+ PF SL D  SRV     +   +E+L  AGAL
Sbjct: 847 TEVRLGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRVQL---SVPQVEALATAGAL 903

Query: 892 DCFGYSRMQ 900
            CFG SR +
Sbjct: 904 GCFGMSRRE 912


>gi|289667318|ref|ZP_06488393.1| error-prone DNA polymerase [Xanthomonas campestris pv. musacearum
            NCPPB4381]
          Length = 1083

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/1055 (25%), Positives = 464/1055 (43%), Gaps = 89/1055 (8%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q  +  P++  L   S +S L GA S   +  +       A+AITD  +L   +   + 
Sbjct: 39   VQVADGLPAYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEA 98

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            +   G++ I+G +  +                      VLLV  A GY +L  L++    
Sbjct: 99   SRVTGVRLIVGSEFTLVDGTRF----------------VLLVENAHGYPQLCALITTARR 142

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                K + R+  + ++    +  + L       +   +   +   AE+      ++ G+R
Sbjct: 143  A-ASKGAYRLGRAEVEAQFRD--VALG------VFALWLPGAQPQAEQGA-WLHQVLGER 192

Query: 182  LYVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ ++ HR  D     QV+Q LA    +  +A+ +       +    D L A+ H+  +
Sbjct: 193  AFLAVELHREQDDAARLQVLQVLAQQLGMTALASGDVHMAQRRERIVQDTLTAIRHTLPL 252

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +          + +L+ R  + +I+ D    L+  VE+A+RC+F L   +   P+ +  E
Sbjct: 253  ADCGAHLFRNGERHLRTRRALGNIYPDA--LLQAAVELAQRCTFDLSKISYTYPKELVPE 310

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                     + LR    AG+  R   G  AK       R+ ++ EL +IA  K+  +FL 
Sbjct: 311  G----HTPTSYLRQLTEAGIRKRWPCGISAK------VREDIEKELALIALKKYEAFFLT 360

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++A++ NI +  GRGS A S   YAL IT ++P    LL  RFL+  R   PD D
Sbjct: 361  VQDVVRFAREQNI-LCQGRGSSANSAVCYALDITAVNPHETRLLMARFLSEKRDEPPDID 419

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EV++YV NKYG ER A   T    + K+A+RDV +A  +P  Q+  L    
Sbjct: 420  VDFEHERREEVLQYVYNKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCY 479

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                      Q I +        LA+P ++++L +++ L    RH S H  G VI D PL
Sbjct: 480  GWGNGETPMEQRIEE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPL 535

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDL 598
            S LVP+     +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    +
Sbjct: 536  SLLVPVENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYSI 595

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
            + +P DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D
Sbjct: 596  ATLPGDDLPTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGD 655

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+ G+E +    P ++ +LK T GV ++QEQVM++    + Y+ SEAD LRR+
Sbjct: 656  MVHPYLRRRQGREDVNYPSPEVEDILKPTLGVPLFQEQVMELLMHAADYTESEADNLRRS 715

Query: 717  MGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M    +  +M++ + R        G +      IFE +  F  YGF +SHAA++A + Y 
Sbjct: 716  MAAWRRGGDMEQHRARVRERMQGKGYASIFIDQIFEQIKGFGSYGFPQSHAASFAKLVYA 775

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-----QFNIQIMPPSVNTPCVDFKV 830
            + W+K H P  F    +  +        +  QDAR     +  ++++P  V     D  +
Sbjct: 776  SCWLKRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWDNTL 835

Query: 831  GDNRIY-------------YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
               R +               +  + G+    A+ I+ A   + F  + D C R     L
Sbjct: 836  VGGRPWRSDDDPGEQPAIRLGMRQVAGLSEVVAQRIVAARRQRAFADIGDLCLRA---AL 892

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            + +   +L  AGAL     +R     ++  +                 +           
Sbjct: 893  DEKARLALAEAGALQGMVGNRNAARWAMAGV------------EARRPLLPGSPEERPVA 940

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
                +   E        + R +G     HP+ + +P +R+  I G  E      G+ + +
Sbjct: 941  FEAPRAGEE-----ILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRSHGSGVHV 995

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A +V  +Q+  T KG+   +VT  +         +
Sbjct: 996  AGLVTQRQRPATAKGT--IFVTLEDEHGMINVIVW 1028


>gi|197106729|ref|YP_002132106.1| DNA polymerase III, alpha subunit [Phenylobacterium zucineum HLK1]
 gi|196480149|gb|ACG79677.1| DNA polymerase III, alpha subunit [Phenylobacterium zucineum HLK1]
          Length = 1085

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/1066 (25%), Positives = 444/1066 (41%), Gaps = 97/1066 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQ  +++S L GA    +++    A    A+ I D N+L   +             
Sbjct: 3    RYAELQAVTNFSFLRGASHPGDLVVAADALGMEAVGICDHNSLAGVVRAWSAMR------ 56

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                    +    ++     +  F    PS+++  S  E Y RL  L++    L Q +  
Sbjct: 57   -----QLHEGGSAVRALTGCRLDFVDGSPSLLVYPSDREAYGRLTRLLT----LGQRRSE 107

Query: 129  VRICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               C   L +     EG ++L       +       +   A KRL        D      
Sbjct: 108  KGACTLRLADFLDHAEGQLVL------AVPPDRLDAAFGDALKRLA---GDLPDVWLAAA 158

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
            +R+   D  R S +  LA     P+VATN+ L+   E     DVL  +     + +   R
Sbjct: 159  RRYGARDLKRLSHLQALAEASGAPMVATNDVLYHGPERRPLQDVLTCIREKCTIHEAGLR 218

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             +   + +LK   EM  +F+  P A+E TVEIA R  F L       P           K
Sbjct: 219  LQANAERHLKAPDEMARLFARFPGAVERTVEIAGRIGFDLSQLRYEYPDEPVPPG----K 274

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 LR+ A AG   R  +G   K       R+ +  EL++I ++ F  YFL V D ++
Sbjct: 275  TAIQHLRDLAWAGAAWRYPEGVPEK------VRKLVAHELDLIEKLDFPNYFLTVHDIVR 328

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--FSLLFERFLNPDRMSMPDFDIDFC 423
            +A+     +  GRGS A S   + L IT +DP +    LLF RF++ +R   PD D+DF 
Sbjct: 329  YARDELKILCQGRGSAANSCVCFCLGITAVDPTKEDQDLLFSRFISENRGEPPDIDVDFE 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV++YV ++YG +R A + T    + + A+R VG+AL +       L   +    
Sbjct: 389  HERREEVMQYVYDRYGRDRAAIVATVIHYRPRMAIRQVGKALGLTEDVTAALANTVWGSY 448

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               V  Q I       +A    P + R   ++Q+L G  RH S H  G V+  R L + V
Sbjct: 449  GDGVPDQHIRQCGLDPDA----PEIRRATALAQELLGFPRHLSQHVGGYVLTKRRLDETV 504

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA---QRGVKVDLSL 600
            P+      D    +++   I+  GL+K D L L  LT L+KS + L          D++ 
Sbjct: 505  PIGNAAMKDRTFIEWDKDDIDALGLMKVDVLALGMLTALRKSFELLPPLPDGTRITDIAH 564

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P +D   Y +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 565  VPQEDPGVYDMLCRADSVGVFQVESRAQMSMLPRLKPRRFYDLVVQVAIVRPGPIQGDMV 624

Query: 659  VVYNNRKNGKEKIVSI-----H---PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
              Y  R+ G E          H     +  +L +T GV ++QEQ M++A   + ++ SEA
Sbjct: 625  HPYLKRRQGLEPAEFPAPSPAHGPPDELRAVLGKTYGVPLFQEQAMRLAIEAAKFTDSEA 684

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            D LRR+M   +    + + +E+FI G +  G  +  A   F+ +  F  YGF +SHA ++
Sbjct: 685  DGLRRSMATFRANGRLWEYREKFIRGMTARGYDEGFAQRCFKQIEGFGSYGFPESHAISF 744

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++ Y +AW+K H+P  F  A +  +     +  +  +DAR+  +++ PP V     D  
Sbjct: 745  ALLVYASAWVKRHHPDVFCVAMLNSQPMGFYQPAQLVRDAREHGVEVRPPDVMASVWDCT 804

Query: 830  VGDNRI-----------------------YYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            + +                                IKG     A  ++ A       +++
Sbjct: 805  LEETERASSSPVGGGGPRSGGGGLRRRPVRLGFRQIKGFRQDDAERLVRAREAGC-RTIQ 863

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF     +  L+RR LE L  A A       R Q L ++  +      +E         +
Sbjct: 864  DFAQ---AAGLSRRALELLAEADAFRSLSMDRRQALWAVKGLAGELNALEAA------PL 914

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
             A +      ++ L   S    +     + R        HP+  ++  L +MG       
Sbjct: 915  LARQSAK-EQQVLLPFMSP---AQHVAEDYRTTSLSLKAHPVGFFREDLNRMGAVRCGTL 970

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 G  + +  +V+ +Q+  T KG  + ++T  +         +
Sbjct: 971  KDARGGRRLSVGGLVLVRQRPGTAKG--VVFLTLEDETGIANIVVW 1014


>gi|99080016|ref|YP_612170.1| DNA polymerase III, alpha subunit [Ruegeria sp. TM1040]
 gi|99036296|gb|ABF62908.1| DNA polymerase III alpha subunit [Ruegeria sp. TM1040]
          Length = 1126

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/1061 (25%), Positives = 445/1061 (41%), Gaps = 86/1061 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS------QKA 62
            P +  L V S+++ L GA     ++ + A     AIAITD N+L   +         ++ 
Sbjct: 25   PGYAELCVTSNFTFLTGASHPEELVTRAAELGLAAIAITDRNSLAGVVRAWSALKELRRE 84

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI------------------VLLVS 104
              AGIQ  I     +D     K+        P  P++                  + L  
Sbjct: 85   AEAGIQ--IRSHQRVDPSSRQKIDTSAPLEPPAAPTLPKLIVGCRLVLRDSQTDWIALPR 142

Query: 105  TAEGYQRLIELVSRMYLLDQGKQSVRICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNS 163
                Y RL  L++        K    +    L        LI L              + 
Sbjct: 143  DRAAYARLTRLLTLGKRR-APKGECHLDARDLMAACRGMSLIALP------------QSD 189

Query: 164  SQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
             + A   +   ++ F   +++     + G D+   +     A     P+VA  + L    
Sbjct: 190  LKTAIPEIRRMQQCFPHYVFLGAAPRYDGSDQAYLAACAHAAQITSAPMVAVGDVLMHRA 249

Query: 223  EDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
                  DVL  +     + +   R     +  LK  ++M  +F   P AL  T+EIA +C
Sbjct: 250  SRRPLADVLTCMREHITIDEIGSRALPNSERRLKAGADMARLFQAHPAALRRTLEIADKC 309

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            SF L   +   P  I        +  +  L   A  GL  R   G   K          +
Sbjct: 310  SFDLGELSYDYPHEIVD-----GETPQARLERLAAEGLRRRYPDGPTQKAVVL------M 358

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            D EL ++A + F+ YFL V D +Q+AK  NI +  GRGS A S+  Y L ITD+ P   +
Sbjct: 359  DKELKLVAELGFAAYFLTVHDIVQYAKSQNI-LCQGRGSAANSILCYLLGITDVSPDMIT 417

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            ++FERF++  R   PD D+DF  +RR+EVI+++  KYG +R     T    +++AA+R+V
Sbjct: 418  MVFERFVSRYRGEPPDIDVDFEHERREEVIQWIYQKYGRDRAGLCATVIHFRSRAAIREV 477

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            G+ + +       L   I       V L+ I +        + D  + + + +  ++ G 
Sbjct: 478  GKVMGLSQDVTAGLSGQIWGMSNGGVDLKRIEELG----LDIQDRRLMQTIRLIGEIIGF 533

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             RH S H  G VI    L +L P+      D  V +++   I+  G++K D L L  LT 
Sbjct: 534  PRHLSQHVGGFVITKGRLDELAPIENAAMEDRTVIEWDKDDIDALGILKVDVLSLGMLTC 593

Query: 582  LQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            LQKS   L       + +  +P +D +TY +L     +G+FQ+ES      L  MQP   
Sbjct: 594  LQKSFALLKAHEGETLSIGTVPQEDAKTYAMLCRADAVGVFQVESRAQMNFLPRMQPREF 653

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
             D++  V++ RPGPI  D +  Y  R+NG E+     P ++ + K T GV ++QEQ MQI
Sbjct: 654  YDLVIEVAIVRPGPIQGDMVQPYIRRRNGLEEPEPFGPELEQVTKRTLGVPLFQEQAMQI 713

Query: 699  AQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            A + +G++  EAD LRR++   +    +   +++FI+G    G S+ +A   F  +  FA
Sbjct: 714  AVVGAGFTPEEADHLRRSLASFRRMGTIGTFRDKFINGMLDKGYSQEVAARCFSQIEGFA 773

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            DYGF +SHAAA+A+++Y +AW+K H+P  F  A +  +        +  +DAR+  ++I 
Sbjct: 774  DYGFPESHAAAFAMLAYVSAWLKCHHPAVFACALLNSQPMGFYAPAQIVRDAREHGVEIR 833

Query: 818  PPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            P  VN    D ++     G   +      IKG     A  I  A  +  +   E    R 
Sbjct: 834  PICVNASDWDNQLERRPDGALALRLGFRQIKGFREEDAGWITAARGNG-YPDPESLWLRA 892

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
              +     VL  L  A A    G +R   L  +  I          R+ K   +F     
Sbjct: 893  GLR---PDVLTRLAEADAFSDMGLTRRDALWQVKAI----------RSAKPLPLFDDPID 939

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
              S         V +       +          HP+++ +P L   G+  +   +    G
Sbjct: 940  GESISEPAVDLPVMHLGEEVVEDYISTRLTLRAHPMELLRPALP--GLTPHAALLDAPLG 997

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +  +  +V+++Q+  T  G  + ++T  +         +P
Sbjct: 998  RH-TVCGLVITRQRPGTASG--VIFLTLEDETGVSNVVVWP 1035


>gi|222110960|ref|YP_002553224.1| DNA polymerase iii subunit alpha [Acidovorax ebreus TPSY]
 gi|221730404|gb|ACM33224.1| DNA polymerase III, alpha subunit [Acidovorax ebreus TPSY]
          Length = 1061

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/1054 (24%), Positives = 440/1054 (41%), Gaps = 88/1054 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S++S   GA     ++ +       A+A+TD  ++   +     A A G+ 
Sbjct: 4    PAYAELHALSNFSFQRGASHPQELVQRAHKLGYSALALTDECSVAGVVRAHGAAQALGLP 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +                        IV L    +G+  L E ++       GK  
Sbjct: 64   LIVGSEFCW-----------------GDVRIVALARDVQGWGDLCEFITAARQR-AGKGG 105

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+       +     ++L       +D +            L + + LF    ++ ++ 
Sbjct: 106  YRVDAQSPWALLQGCEVLLAPRREAFVDASDLI----AVSACLESVRGLFASNCWLAVEL 161

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
            H   D       + Q      LPLVA  +    S       DVL AV     V+      
Sbjct: 162  HTAPDDGLWLRTLTQAGAQLGLPLVAAGDVHMHSRAAKPLQDVLTAVRLGRSVAACGFAL 221

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +   +  L+ RS +  ++   P  L  T+++A RC+F L       P    +      + 
Sbjct: 222  QPHAEKRLRPRSRLAGLYP--PALLAATLQVAARCTFSLNEIKYRYPLETVQPGMTASQT 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      G  VR   G        +    +++ EL +IA   +  YFL V D +++
Sbjct: 280  ----LACLTWEGARVRYPDGV------PEAVVTQVEKELALIAECGYEMYFLTVHDIVRY 329

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I +  GRGS A S   Y L IT +DP +  LLFERF++ +R   PD D+DF  DR
Sbjct: 330  ARSQGI-LCQGRGSAANSAVCYCLGITAVDPQKTRLLFERFISRERSEPPDIDVDFEHDR 388

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+ VI+Y+ +KYG +R A      S + ++ALRDVG+AL +  + VD   K         
Sbjct: 389  RETVIQYIYDKYGRDRSAITAVVISYRTRSALRDVGKALGVAPALVDAFAKEHHWFDDVL 448

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             +   +A   R  E  L   +    L+++++L G  RH S H  G V+ +  L++LVP+ 
Sbjct: 449  ATEHLLALAERLGE-PLGAHTAALWLQLARQLRGFPRHLSQHVGGFVLTEGKLTRLVPVE 507

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDD 605
                    + Q++   ++  GL+K D L L  L+ L++ L+   A RG   DL+ IP +D
Sbjct: 508  PAAMDGRSIIQWDKDDLDAMGLLKVDVLALGMLSALRRCLEMRAALRGESWDLADIPPED 567

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--- 662
              TY ++    T+G+FQ+ES      L  +QP    D++  V++ RPGPI   +V+    
Sbjct: 568  PATYDMVCRADTVGVFQIESRAQMSMLPRLQPREFYDLVVQVAIVRPGPIQGGMVHPYLQ 627

Query: 663  ---NRKNG-------KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                R+            I      +   L+ T GV I+QEQVMQIA   +G+S  +AD 
Sbjct: 628  ARERRRQWQRTKREEPFPIEYP--RLGNALRRTLGVPIFQEQVMQIAIDGAGFSAGQADE 685

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRR+M   + K E+ + ++ F  G   NG     A  +F+ +  F +YGF +SHA ++A+
Sbjct: 686  LRRSMAAWRRKGEVHRFEKPFKDGLLANGYPPEFADRLFQQILGFGEYGFPESHAYSFAL 745

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++Y ++W+K H P  FLAA +  +        +  QDAR+  + ++P  V T  VD  + 
Sbjct: 746  LAYASSWLKRHEPACFLAALLNAQPLGFYTPAQLVQDARRHGVCVLPIDVATSDVDCTLE 805

Query: 832  ------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                           +   L  + G+G   A  +++A    PF + ED   R    + + 
Sbjct: 806  EPLAPVAGVSLAQPAVRLGLRLVAGLGAAAAERLVQARGSGPFVNSEDLALRARLDRQDL 865

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            + L +     A    G+ R Q+  +   ++                    +         
Sbjct: 866  QALAAADALRA--LAGHRRQQMWDAAAQLRA--------------PPLLQDAPVHEAAPQ 909

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
            L         +    +    G     HPL + +  L++  +   ++  +   G  +R   
Sbjct: 910  LPAAPEGEDIL---WDYAATGLTLRRHPLALLREKLQRWRLATAQQLQSAPHGRRVRACG 966

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +V  +Q+  +  G+   +VT  +         +P
Sbjct: 967  IVTVRQRPGSANGTM--FVTLEDETGSVNVIVWP 998


>gi|207724510|ref|YP_002254907.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            MolK2]
 gi|206589731|emb|CAQ36692.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            MolK2]
          Length = 1081

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/1057 (25%), Positives = 450/1057 (42%), Gaps = 79/1057 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA   + ++ +  A    A+A+TD  ++   +     A  AG++
Sbjct: 18   PDYAELHCISNFTFLTGASHPHELVARAKALGYRALALTDECSVAGTVRAHVAAKEAGLK 77

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+             + +    P+     +VLL    +GY  L E +++  L    K  
Sbjct: 78   LIV--------GSRFTVRDAQGEPW---LRLVLLAQDIDGYGNLCECITQARLA-APKGD 125

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             R+    L         +        I    +    Q    + L  +++FGDRL + L+ 
Sbjct: 126  YRLLADDLAAPADGLAHLRGMPHCLAILLPDYDPDPQRLRAQALWCRQVFGDRLSMALEL 185

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
              R  D      V  ++   ++PLVAT +    S +    HDVL A+  S  +++     
Sbjct: 186  PLRHADDRHRGTVAAVSEQADVPLVATGDVAMHSRQRKPLHDVLTAIRLSRPIAECGLEL 245

Query: 247  RVTPDHYLKNRSEMVSIFSDLPE----ALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              + +  ++ R  M   F    E     L  +VE+A  C F L       P  +  E   
Sbjct: 246  APSAEQAMRTR--MQLAFFYQGERGAPLLRRSVELASLCDFSLDEIEYEYPHEVVPEG-- 301

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                    L  + +AG   R  +   AK       R ++  EL +IA +++  +FL V D
Sbjct: 302  --LTPAAYLHAEVMAGAARRYGKAIPAK------VRAQIAEELALIAELRYEPFFLTVYD 353

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+  +I +  GRGS A S   Y L IT++DP   + LF RFL+  R   PD D+DF
Sbjct: 354  VVRFARSRDI-LCQGRGSAANSAVCYCLGITEVDPESGNTLFARFLSRARNEPPDIDVDF 412

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL +    ++++ K     
Sbjct: 413  EHQRREEVIQYIYGKYGLTRTALAAALITYRTRSALRDVGRALGIDLGVIEQVAKAQAWW 472

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                    A A  +  +      P V R   +  +L G  RH S H  G VI    LS+L
Sbjct: 473  DGQ----HAFAQHAGQQGLDPESPLVQRWAGLVGQLRGFPRHLSQHVGGFVIAQGKLSRL 528

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------AQRGVKV 596
            VP+      D  V Q++   +E   L+K D L L  LT ++++LD L        R    
Sbjct: 529  VPIENAAMQDRRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMLDALPGRRARYGAS 588

Query: 597  D---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            D   +  +P +D +TY +++   T+G+FQ+ES   +  L  ++P    D++  V++ RPG
Sbjct: 589  DKLAMQHLPDEDRDTYDMISRAETIGVFQIESRAQQSMLPRLRPRTYYDLVIQVAIVRPG 648

Query: 654  PIDNIV--VYNNRKN-----GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            PI   +   Y  R+        + +    P +  +L+ T GV I+QEQVM+IA    G++
Sbjct: 649  PIQGGMVHPYLQRREAMRNGNPDCVTYPGPEVRAVLERTLGVPIFQEQVMEIAMKAGGFT 708

Query: 707  LSEADVLRRAMGK-KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKS 764
              EAD LRR M   K K  + + +ER +    +           +   +  FA+YGF +S
Sbjct: 709  ADEADRLRRDMAAWKRKGNLTEHQERLMQEMVEVRHYDPAFVEALCRQMEGFAEYGFPES 768

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAA +A ++Y ++++K H P  F AA +  +        +  Q+AR+  ++++P  V   
Sbjct: 769  HAAGFAKLAYVSSYLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSRVRVLPADVTVS 828

Query: 825  CVDFKV--------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
              D  +        G   I   L+ I+G+    A  I+ A A  PF S+ED   R    +
Sbjct: 829  AWDSTLHERPHGAGGQPDIRLGLSRIRGMRPPAAERIVAARAQAPFASVEDLAHRAALDR 888

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             +  VL +          G+ R  L Q+L             +    ++    +      
Sbjct: 889  HDLSVLAAANALLP--LAGHRRQALWQTLAL-----------QEPGQDHALLRQARPVEA 935

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
             + L   S+    V    +   LG     HPL + +P L +M             G   R
Sbjct: 936  PLALPAPSLGEEVV---ADYGSLGLSLQSHPLSLLRPRLERMRFVTAATLAGYRNGQLAR 992

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +V  +Q+  T KG+   +V+  +         +P
Sbjct: 993  ACGIVTVRQRPGTAKGT--IFVSIEDETGVVNVVLWP 1027


>gi|119716129|ref|YP_923094.1| error-prone DNA polymerase [Nocardioides sp. JS614]
 gi|119536790|gb|ABL81407.1| error-prone DNA polymerase, DnaE-like protein [Nocardioides sp.
            JS614]
          Length = 1145

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/1072 (26%), Positives = 454/1072 (42%), Gaps = 90/1072 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HSS+S L+GA   ++++ +        +AITD +  + A  F++ A       
Sbjct: 52   PYAELHCHSSFSFLDGASGPDHLVLEALRLGLHGLAITDHDGFYGAPLFAETAQLHATNE 111

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
                              Q     P    +++L    EGY RL   ++   L    K   
Sbjct: 112  QSLKTAYGAELSLGLTRPQHGVADPEGGHLLVLARGVEGYHRLAGAITDAQLRGDEKGRP 171

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
               L+ L E G +  ++LTG   G + RA   +    A   L     LF  D + V L  
Sbjct: 172  VYDLAELAERGRDHWLVLTGCRKGAVRRALLEHGPVAAAAELDRLTALFGHDNVVVELID 231

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQKDRP 246
            H    D      +  LA  H L +VATNN      E +   D + AV    ++       
Sbjct: 232  HGYPTDSAHNDLLAALAADHGLRVVATNNVHHARPEQHRVADAMAAVRARRSLAEMDGWL 291

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +    L++  EMV  F+  P A+  +VE+A    F LQ   P LP    K+       
Sbjct: 292  PASGMACLRSGEEMVRRFARYPGAVARSVELADEIVFDLQKATPRLP----KDGIPAGHT 347

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     G   R A G +         R  ++ EL +IA   F GYF+IV D + +
Sbjct: 348  PSTWLRELTERGFAQRYAGGPLETRA-----RASVEHELRIIAEKDFDGYFVIVHDIVAF 402

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I +  GRGS A S   YAL IT IDP+ + L FERF++  R   PD D+DF   R
Sbjct: 403  ARSRGI-LCQGRGSAASSAVCYALGITAIDPVFYRLPFERFISQHRDEEPDIDVDFDAGR 461

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI++V  +YG    AQ+      + K A+RD  +AL     Q D   K + +     
Sbjct: 462  REEVIQWVYERYGRHNAAQVANVVGYRPKMAVRDAAKALGHSPGQQDAWSKQVTSW---- 517

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             ++          +  +  P V     ++    G  RH   H+ G+V+ +RP+ ++VP+ 
Sbjct: 518  TTVATRDGGEHPADLHVPAPVVA----LANGFLGAPRHLGIHSGGMVLTERPIGEVVPIE 573

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            R       V Q++    E  GL+KFD LGL  L+ L   +  + +  G + +LS IP ++
Sbjct: 574  RARMDKRTVLQWDKDGCEYMGLVKFDLLGLGMLSALDHMMRIVEEHLGERWELSTIPKEE 633

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
               Y LL    ++G+FQ+ES      L  ++P    D+   ++L RPGPI       Y  
Sbjct: 634  PAVYDLLCRADSVGVFQVESRAQIGTLPRLRPREFYDLAIEIALIRPGPIQGGAVHPYIR 693

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R  G+E++   HP + P+L+ T+GV ++QEQ+M +A++L   +  EAD+LRRAM  K+  
Sbjct: 694  RATGREEVEYAHPSLVPVLERTKGVPLFQEQLMDMARVLGDCTRDEADLLRRAMGSKRGI 753

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E ++  K++   G ++ G+    A  I+  +  FA++GF +SHA ++A + Y ++W K H
Sbjct: 754  ERIESIKDKLYEGMARKGLVGEEADAIYLKILSFANFGFAESHALSFAKLVYASSWCKLH 813

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC----------VDFKVGD 832
            YP  FLAA +  +       +    DAR+  ++++ P +               D  VG 
Sbjct: 814  YPGAFLAALLRAQPMGFYSPQSLVHDARRHGVEVLRPDLVRSAASADLEPLAVADGPVGL 873

Query: 833  NRI-----------------------------YYSLAAIKGVGTTTARHIMEASADKPFD 863
             R                                 L A++G+    A  I+ A A++PF 
Sbjct: 874  PRCLVDHPERTDWVPGTPDPTPAHRRDAAYAVRLGLDAVRGISAVVAERIVAARAERPFA 933

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCF----GYSRMQLLQSLDNIQKYAQWVEKNR 919
               D   R     L+ R LE+L  AGA D      G SR Q L +       A W E   
Sbjct: 934  DQADLSRRA---GLDARQLEALATAGAFDEAFPGGGLSRRQALWN-------AGWTESEE 983

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                     H +G  +           +       +    G   + HP    +  LR  G
Sbjct: 984  ---------HLEGIRAAGPA-PMLPEMDEVEVTMADLWATGITPAQHPFGHLRERLRAAG 1033

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            IK   ++ +   G  + +A +V  +Q+  T  G  + ++   +         
Sbjct: 1034 IKSVADTASAEPGRRVHVAGLVTHRQRPGTAGG--VTFLNLEDETGMLNVIC 1083


>gi|186684965|ref|YP_001868161.1| DNA polymerase III subunit alpha [Nostoc punctiforme PCC 73102]
 gi|186467417|gb|ACC83218.1| DNA polymerase III, alpha subunit [Nostoc punctiforme PCC 73102]
          Length = 876

 Score =  774 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/811 (38%), Positives = 467/811 (57%), Gaps = 62/811 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+  A    AIA+TD   ++ A+E  +   +  I+P
Sbjct: 2   SFVPLHIHSDYSLLDGASQLPELVDQAIALGMKAIALTDHGVMYGAVELIKICRSQNIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +   D  K   + K         V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62  IIGNEMYVINGDIEKQERRPK------YHQVVLAKNTKGYKNLVKLTTISHLQGVQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L++   EGLI+ +    G + +A   N    A K    +K +FGD  Y+ 
Sbjct: 116 FSRPCINKDLLKQYH-EGLIVTSACLGGEVPQAILSNRPDAARKVAQWYKDVFGDDYYLE 174

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR    ++V++A    + ++ATN+S F+S  D EAHD L+ +    ++ +  
Sbjct: 175 IQDHGSQEDRIVNVEIVKIARELGIKIIATNDSHFISCFDVEAHDALLCIQTGKLIIEDK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           R R +   YLK+  EM  +F D      + EA+  T E+A +      +  P +P     
Sbjct: 235 RMRYSGTEYLKSGEEMRQLFRDHLPDDVISEAVATTEEVADKVEPYHIMGEPQIPTPPIP 294

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                    +    + A  GL  RL +   ++      Y++RL++EL +I +M FS YFL
Sbjct: 295 SG----HTADTYAEDVAWNGLLERLNR--KSRQEVDSVYKERLEYELKMIQQMGFSKYFL 348

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           +V D+I++A+ NNIPVGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 349 VVWDYIKFARDNNIPVGPGRGSAAGSLVAYAMRITNIDPVHHGLLFERFLNPERKSMPDI 408

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D DFC ++RD+VI YV  KYG +RVAQIITF  L +KA L+DV R L +PY + D++ KL
Sbjct: 409 DTDFCIEQRDKVIEYVTEKYGADRVAQIITFNRLTSKAVLKDVARVLNIPYGEADKMAKL 468

Query: 479 IPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           IP     P  L+ +      +  F+E    +P V   L+++ ++EG  +    HAAG+VI
Sbjct: 469 IPVVRGKPTKLKVMVSDKTPEPEFKEKYDKEPHVRHWLDMAMRIEGTNKTFGVHAAGVVI 528

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
            D PL ++VP+ ++      +TQ+ M+ +E  GL+K DFLGL+ LTL+QK++D + + RG
Sbjct: 529 SDEPLDEIVPLQKN-NDGSVITQYFMEDLESMGLLKMDFLGLRNLTLIQKTVDLIQETRG 587

Query: 594 VKVDLSLIPF-------------------DDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            +VD   IP                    D  +TY LL      GIFQLESSGMRQ +  
Sbjct: 588 YRVDPDEIPRQERKAQKILAKGEHSSLPKDVQKTYELLEAGELEGIFQLESSGMRQIVRD 647

Query: 635 MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           ++P  IEDI ++++LYRPGP+D   I  + NRK+G+E I   H +++P+L ET G+++YQ
Sbjct: 648 LKPSNIEDISSILALYRPGPLDAGLIPKFINRKHGRENIDYQHTVLEPILDETYGIMVYQ 707

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQ+M+IAQ ++GYSL +AD+LRRAMGKK   EM KQ+E+F+ GA+KNG+ K +A  +FE 
Sbjct: 708 EQIMKIAQDMAGYSLGQADLLRRAMGKKKVSEMQKQREKFVDGAAKNGVPKKVADELFEQ 767

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           + KFA+Y            +SY+T  +   Y
Sbjct: 768 MLKFAEYC-----------LSYETEILTVEY 787


>gi|116617885|ref|YP_818256.1| DNA polymerase III catalytic subunit, DnaE type [Leuconostoc
            mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096732|gb|ABJ61883.1| DNA polymerase III catalytic subunit, DnaE type [Leuconostoc
            mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 1112

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/1032 (31%), Positives = 524/1032 (50%), Gaps = 57/1032 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQ+ SSYSLL+   ++  I+         AIA+ D N ++ A+++ ++    GI+P+
Sbjct: 2    YAPLQILSSYSLLKNPNTIEQIVQTAKTRGYEAIALADVNVMYGAIDWFRQTKKHGIKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L ++          G     T+  +VLL     GYQ L+ L S   +  QG     
Sbjct: 62   FGLTLMVN----------GLVNTATLFPVVLLAENQVGYQNLMWLSS-AKMTSQG----- 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL-YVNLQRH 189
                W   +     I +   +   + +       +           L  +R  ++ +   
Sbjct: 106  -DFQWETMVKHLDGINIVFPTDSELVQLISSG-YEEVNNYWHQLLTLVDERHSFIGINSQ 163

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRV 248
                   + ++ Q +      ++A ++  +L+ +D     VL A+ A+  +   K   + 
Sbjct: 164  MAP--QIQERLAQFSERTGGHMIALDDIDYLNSDDAFTTQVLKAIDANVKLDDIKILAQQ 221

Query: 249  TPDHYLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               H L++ + +   +     L  A  N   +  + +  ++     LP F          
Sbjct: 222  QGSHILRDLAVVQQEYQGTEILKTAYINNELLVSKSNVSIEFKDTALPPFETPSG----V 277

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 L   AV+GL+ RL    ++       Y +RL  EL  I  + FS YFLIV D + 
Sbjct: 278  TNAQFLETIAVSGLKKRLQGHNVSLNL----YEERLQHELKTIEVLGFSDYFLIVWDIVN 333

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A KN+I  GPGRGS AGS+ AY+L ITD+DPL+F+LLFERFLN +R+ MPD DID+   
Sbjct: 334  FAHKNHIQTGPGRGSVAGSLVAYSLQITDVDPLQFNLLFERFLNDERVQMPDIDIDWPPS 393

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPA 484
            +R+E+  Y+  KYG     QIITFG+L +K ALRDVGR   +P   + +L   IP     
Sbjct: 394  KREELFTYLHQKYGKRNFGQIITFGTLASKQALRDVGRVFGLPTPTLSKLSASIPEGKNG 453

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              VS+       + + A     +   LL+ + K+EGL ++ STHAAGIV+   PL Q +P
Sbjct: 454  RKVSIDDALKAPQLQNALRDIDNGRLLLQTALKIEGLPKNYSTHAAGIVLSANPLVQTLP 513

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPF 603
            +         +TQF    +E+ GL+K D LGL+ L +L ++L +   +     D++ I  
Sbjct: 514  VQSGT-EGRLLTQFEKDPVEQLGLLKIDILGLQNLAILSQALYYAQKELPEGFDITKIAL 572

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +T  L     T G+FQ ES+G++  L  ++P   E I+A+ +LYRPGP  NI  +  
Sbjct: 573  DDAKTLALFAKGDTNGVFQFESAGIKNVLRKLKPATFEHIVAVNALYRPGPAQNIDKFIA 632

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++GKE +    P +  +L  T G+I+YQEQVM +A+  +G++L EADVLR AM KK  +
Sbjct: 633  RRHGKEAVTIPDPSLKSILAPTFGIIVYQEQVMLVAESYAGFTLGEADVLRSAMSKKKVD 692

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M K  E+FI GA KNG  +  A  IF  + +FA+YGFN+SHA AY+ ++++ A++K HY
Sbjct: 693  KMQKLHEQFIKGALKNGHDQEQAELIFSYIDEFANYGFNRSHAVAYSKLAFELAYLKAHY 752

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PV F  A +   +   +K++++  +A+   I ++ P VN     +   +N++   L  I+
Sbjct: 753  PVAFFTALLNANLGEQKKVQQYVSEAKIRGIVVLAPDVNKSYKFWTSIENQLQMGLNNIR 812

Query: 844  GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GV T     ++E    +  F +++ F  R+  K   R VLE LV+AGALD FGY+R +L+
Sbjct: 813  GVRTDFVTGVLEERQNNGSFQTIQSFVRRLPDKMRKREVLEQLVYAGALDSFGYNRRELI 872

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            +++ ++ + A              F +      ++  ++K+     S R + E+ V+G  
Sbjct: 873  ENIASLIEGAS-------------FGN---LILEETKIKKYDDFALSDRLKKEKEVIGVN 916

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             SGHPLD Y   + + G   + +    ++ + + ++ A+V S +Q +T+KG  + +V  S
Sbjct: 917  LSGHPLDTYVDFILENG---FSQIGNVVQPSQVEKIIAIVDSIRQIRTKKGDDMAFVKVS 973

Query: 1022 EPAKEYEANFFP 1033
            +   E     FP
Sbjct: 974  DTTGEISVTIFP 985


>gi|294053669|ref|YP_003547327.1| DNA polymerase III, alpha subunit [Coraliomargarita akajimensis DSM
            45221]
 gi|293613002|gb|ADE53157.1| DNA polymerase III, alpha subunit [Coraliomargarita akajimensis DSM
            45221]
          Length = 1066

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/1050 (27%), Positives = 482/1050 (45%), Gaps = 66/1050 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V L   S+++ L GAL    ++         A A+ D N ++ A +F   A   G + +
Sbjct: 3    YVELHARSAFNFLRGALPPKAMVRAFREFGIGAAAMPDRNGVYGAPDFQFAAEELGFEAL 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-------- 122
            I  +L +      +           +  + + V    GYQ L  L++RM+L         
Sbjct: 63   ISAELTLA-----RGLEHTWLSGDYLGHLPVFVENRTGYQNLCRLLTRMHLRWRKQSGPL 117

Query: 123  -DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180
              +        L+ L    +EGLI  TG   GP+  A+    ++  E  +     +F  D
Sbjct: 118  PGESDAYPAADLAELA-AHSEGLIATTGDREGPLACAWRAGGARALEAAMDVLCAVFPKD 176

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R+YV +QRH    +R     +V LA    +PL+ATN   + S       DV   + + T 
Sbjct: 177  RIYVEIQRHLVRSERPYNRALVALAEHKGVPLLATNGPAYASSTGRAVLDVFTCLRYHTT 236

Query: 240  VSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            + +  R      +  +K+ + M ++F DLP+A++NTV +A R  F L+      P++   
Sbjct: 237  LDRAGRLLEANTEQCIKSPAAMRALFEDLPQAVDNTVRLAARLQFRLRDLGYHFPKYPVP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              + +     + LR   + G + R        G  ++  R++L+ EL +I ++ F+GYFL
Sbjct: 297  TGETMN----SFLRKLTLFGAQNRY-------GSISRKVRRQLEHELKIIEKLGFAGYFL 345

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV D   +  +  I +  GRGS A S   Y+L IT +DP+   LLFERFL+  R   PD 
Sbjct: 346  IVWDITNFCTERGI-LCQGRGSAANSAVCYSLGITAVDPIAGGLLFERFLSEGRKGWPDI 404

Query: 419  DIDFC-QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            DID     +R+ VI+ V  +YG    A        + ++A+R++G+ L +P   V+R   
Sbjct: 405  DIDLPSGAQREAVIQEVYQRYGKHSAAMTANVNHYRGRSAMREIGKVLGLPLDVVERFNA 464

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L       P +L+ + D  +       +P     L++ +   GL R+   H+ G+VI + 
Sbjct: 465  LFSRG-DFPHTLK-MMDQIKQAGLDWENPRHQAALQVFKATTGLPRNLGQHSGGMVICND 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             L+Q+VP+         V Q+N    E  G++K D LGL  + ++Q+ ++   +RG  VD
Sbjct: 523  ALNQIVPLENASMEGRVVLQWNKDACEDLGMVKIDLLGLGMMAVMQECIELTHERGRGVD 582

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            L+ I   D ETY LL    T+G+FQ+ES      L  MQP C  D+   V++ RPGPI  
Sbjct: 583  LACIDKTDTETYDLLCRAETIGVFQVESRAQMATLPRMQPRCFYDLAIEVAIIRPGPISG 642

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D    Y NR+NG E +  +   + P+L+ T G+ ++QEQV+++  +++G + SE++ LRR
Sbjct: 643  DLANPYLNRRNGIEPVTYLDERLKPILERTLGIPMFQEQVLKMGIVMAGLNASESEQLRR 702

Query: 716  AMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            A+G  + +E ++  K    +   + GI    A  I   +  FA YGF +SHA ++A+I+Y
Sbjct: 703  ALGFTRDEERVNAAKATLRARLQQRGIEGEKADWIVNTIDSFALYGFPESHAVSFALIAY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             +AWMK H   EF  A +  +           QDAR++ ++ +PP V     D  + D+ 
Sbjct: 763  ASAWMKVHRTEEFFCALLNNQPMGFYGPATLIQDARRYGLRFLPPDVTRSEWDCTIEDDE 822

Query: 835  ----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                I   L  I G+G      ++EA A +PF++L  F      K+   RVL     AGA
Sbjct: 823  GAACIRIGLKMINGLGQPAVVAMLEARAVRPFETLAQFRLGTQFKQDELRVL---AQAGA 879

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITL----EKF 943
            L+ F  SR Q L +++   +              ++F+    E+    D +         
Sbjct: 880  LNGFMASRRQALWAVEQPLE-------------LDLFSVAELEQQVAEDPVPYNRRAAPL 926

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                   R   +          HP+   +P LR       E       G  + +   V+ 
Sbjct: 927  PEMTQWERLCADFATTSVTVGSHPMRQMRPQLRG-RTWTAESLNTARDGQRVTVVGAVIC 985

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +Q+  T KG  + +++  +         +P
Sbjct: 986  RQRPGTAKG--VLFLSLEDETGIINCVLWP 1013


>gi|126733349|ref|ZP_01749096.1| DNA polymerase III, alpha subunit [Roseobacter sp. CCS2]
 gi|126716215|gb|EBA13079.1| DNA polymerase III, alpha subunit [Roseobacter sp. CCS2]
          Length = 1101

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/1054 (25%), Positives = 456/1054 (43%), Gaps = 86/1054 (8%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
                +FV L V + +S L GA    ++     A     +   D N +   +    +A  A
Sbjct: 21   NTPAAFVELGVTTCFSFLRGASDAVDLATTANAVGYDKLGCADLNTMAGVVRLHAEALRA 80

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-- 123
             I P+IGC+L +   +                  +        Y RL +L+S+  + D  
Sbjct: 81   QITPVIGCRLQLITGEEF----------------LAYPRDRSAYGRLTKLLSKGKMHDVD 124

Query: 124  ---QGKQSVRICLSWLQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
               Q K    + L  L +      LI L G     +D   F       ++ L T K +  
Sbjct: 125  GAWQAKGVCDMTLDDLAKYSAGVQLIALPG-----VDLDHFSAGLSRLKRALPTLKHIAA 179

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              LY      RG DR R +Q+  LA  + + ++ATN+  +   +     DV+  + +   
Sbjct: 180  SYLY------RGDDRARINQLDALASANGMSILATNDVHYHVPDRRPLQDVMTCILYKKT 233

Query: 240  VSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            + +         + +LK+ ++MV +F++ P A+  T E+A  C+F L   A   P+    
Sbjct: 234  IQKAGFLLDANAERHLKSPAQMVRLFAEWPHAITATREVADACTFKLTELAYEYPKETVP 293

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +        +  L +    G   R   G           +  L  EL +IA++  + YFL
Sbjct: 294  DG----ATPQEYLEDLTWKGAAWRYPNGV------PGSLKATLRKELALIAKLDIAQYFL 343

Query: 359  IVADFIQWAKKNNIP--VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
             +   + +A+    P  +  GRGS A S   Y L IT +DP    LLFERF++ +R   P
Sbjct: 344  TIQQVVNFARYECKPPILCQGRGSAANSAVCYVLGITAVDPDTNDLLFERFISEERKEPP 403

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  +RR+EVI+++ +KYG +R A   T    + + A+R+VG+ + +       L 
Sbjct: 404  DIDVDFEHERREEVIQHIYDKYGRDRAALCATVIHYRPRMAVREVGKVMGLSEDITTALS 463

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            K I       V  +  A+        L DP + R ++++ ++ G+ RH   H  G ++ +
Sbjct: 464  KTIWGSWGREVGAKEAAE----AGIDLKDPLMARTIKLADQMIGMPRHLGQHVGGFILTE 519

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK 595
            +PL + VP+      +    +++   I++  ++K D L L  LT ++K+ D + A  G K
Sbjct: 520  KPLLETVPIGNGAMPERSFIEWDKDDIDELRILKVDVLALGMLTCIRKAFDLIEAHYGEK 579

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            + L+ I   D  TY +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 580  LTLASIEEGDKPTYDMLCKGDSLGVFQVESRAQMNMLPRLKPREFYDLVIQVAIVRPGPI 639

Query: 656  --DNIVVYNNRKNGKEKIVSIHP-------LIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
              D +  Y  R+NG+E      P        +  +LK T+GV I+QEQ M+IA + + +S
Sbjct: 640  QGDMVHPYLRRRNGQEPEEYPSPGPDHDPDELRKVLKRTKGVPIFQEQAMKIAMVAAEFS 699

Query: 707  LSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
              EA+ LR+AM   + +  +   +E+ +    + G     A   F  +  F DYGF +SH
Sbjct: 700  PDEANQLRKAMATFRSRGTIGALEEKMVGRMIRRGYDPEFATRCFNQIKGFGDYGFPESH 759

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AA++A + Y ++W+K HYP  F AA +  +        +  +DAR+    +  P VN   
Sbjct: 760  AASFAHLVYVSSWIKCHYPDVFCAALLNSQPMGFYAPAQIVRDAREHGKIVRAPDVNYSD 819

Query: 826  VDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
             D  +     G   +   L  I GV    A+ I++A   +PFDSL D  +R        R
Sbjct: 820  WDNTLEPIAPGQFAVRLGLRQIDGVREDMAQRIVDAR-QQPFDSLTDLKTRARLDAGTIR 878

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KIT 939
             L S   A  +      R Q L     ++                +F+  K   ++ +  
Sbjct: 879  KLAS---ADGVRSMTLDRRQALWDARALRDA----------PDLPLFSENKDEGAEVRFD 925

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
            L +  +    V    +          HP+   +  + K G            G  I+LA 
Sbjct: 926  LPQMPICEHVV---ADYETTRLSLKAHPMSFLRKSMDKQGYTPTRMLDQLRNGQQIKLAG 982

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +V+ +Q+  + KG  + ++T  +         +P
Sbjct: 983  IVLIRQRPGSAKG--VCFITVEDERGVANLVVWP 1014


>gi|226525340|gb|ACO70937.1| DNA polymerase III alpha subunit [uncultured Verrucomicrobia
            bacterium]
          Length = 1040

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/1035 (27%), Positives = 475/1035 (45%), Gaps = 70/1035 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + ++V L   S+ S L GA    +++ + A  + PA+A+ D + ++ +    +     G+
Sbjct: 10   TMTYVELHARSACSFLRGASHPESLVREAARLKLPALAVCDRDGVYGSARVHRDGKEHGV 69

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G +L ++ Q                  + +LV+T  GY+ L ++++R  L    K 
Sbjct: 70   RAIVGAELTMEDQS----------------VVPVLVATRTGYRNLCQMITRAKLRG-TKL 112

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
               +    L E  +EGL+ LTG   GP+ RA        A       +  FG   ++V +
Sbjct: 113  DAPVRWDELGEF-SEGLVALTGDEEGPVRRALASKDRAAAMAATERLRAAFGGHNVFVEI 171

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH    +      +  LA    LPL+ATN  L  + E+    DV     H T +    R
Sbjct: 172  QRHLHRGEERENDALADLAEATGLPLLATNGVLHATREERGVLDVFSCARHHTNLESGGR 231

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  + +LK+ + M  +F++ PEA+ NT  +A R  F L+      P+F     + + 
Sbjct: 232  HLAYNAERHLKSPARMARLFANHPEAIANTERLADRLEFSLENLGYEFPKFPVSPGETM- 290

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               ++ L ++ + G   R                 +L  EL +I R+ FSGYFLIV D +
Sbjct: 291  ---DSVLYHRTMEGARNRYPAM-------TPKVLDQLHKELELITRLGFSGYFLIVWDLV 340

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC- 423
             + + +NI +  GRGS A S   YAL IT  DP+  +LLFERFL+  R + PD D+D   
Sbjct: 341  NFCRNDNILI-QGRGSAANSAVCYALGITACDPVAGNLLFERFLSEGRKTWPDIDLDLPS 399

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-D 482
             DRR+ VI+ V  +YG    A      + + ++A+R++G+AL      ++R  +L  N D
Sbjct: 400  GDRRERVIQEVYRRYGRHGAAMTANVITFRGRSAMREIGKALNFAPDVLNRFSRLFGNGD 459

Query: 483  PAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              H + L A     + REA +    P     +E+ +K+ GL RH   H+ G++I    LS
Sbjct: 460  FPHTMDLSA-----QLREAGIPPEHPRTKSAVELYRKIYGLPRHLGQHSGGMIICQGELS 514

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
             +VP+         V Q++       G+IK D LGL  +  +Q SL+    R   VDL+ 
Sbjct: 515  SVVPLENASMPGRVVAQWDKDDCHDLGIIKVDLLGLGMMAAMQDSLEMCQARDRPVDLAT 574

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI-- 658
            +P DD  TY L+    T+G FQ+ES      L  ++P    D++  V++ RPGPI     
Sbjct: 575  MPMDDPATYDLMCRADTIGTFQVESRAQMATLPRLRPQKFYDVVVEVAIIRPGPIQGGLL 634

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R  GKE +  IHP + P+L+ T GV ++QEQ++++A +++ +S SEA+ LRRA+ 
Sbjct: 635  HPYLARHAGKEDVEYIHPDLKPVLERTLGVPLFQEQILKVAMVMADFSGSEAEDLRRALS 694

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              + +E MD+   +  +G  + G+   I   I      FA YGF +SHA ++A+I+Y + 
Sbjct: 695  FHRSQERMDQVCVKLRAGMVRKGVDPEIVDRIVHATQSFAVYGFPESHAISFALIAYASC 754

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-Y 836
            WMK H   EF A  +  +           +DA++  ++    SV        VGD+    
Sbjct: 755  WMKVHRAPEFYAGLLNNQPMGFYSPATLVKDAKRRGLRTRAVSVLVSDWLCTVGDDDTLR 814

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  ++G+       I+     K F+SL DF  R    K   R L      GAL+    
Sbjct: 815  LGLCYVRGLTKEDGERIVAERQRKSFESLMDFQLRTAVPKPALRTL---AKIGALNGLSE 871

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R      ++  ++             +++FA E     +++ L+     +   R   + 
Sbjct: 872  HRRAAQWEVEIRREE------------DDLFARE--IREEELPLKPM---DPFERVRADY 914

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
                     HP+ + +  L  +      +    + G  + +  MV+ +Q+  T KG  + 
Sbjct: 915  AGTSLTTGPHPMALVRDRLPDL--WRAADLPLAVNGQRLSIGGMVICRQRPGTAKG--VV 970

Query: 1017 WVTFSEPAKEYEANF 1031
            +V+  + +    A  
Sbjct: 971  FVSLEDESGVANAIV 985


>gi|114570381|ref|YP_757061.1| DNA polymerase III subunit alpha [Maricaulis maris MCS10]
 gi|114340843|gb|ABI66123.1| error-prone DNA polymerase, DnaE-like protein [Maricaulis maris
            MCS10]
          Length = 1093

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/1053 (26%), Positives = 453/1053 (43%), Gaps = 88/1053 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S ++  L   S++S L GA   + ++    A    AI + D N+L   +   + A  AG+
Sbjct: 2    SETYAELVAASNFSFLRGASHPDEMVLAAKALGLAAIGLCDRNSLAGVVRAHKAAKKAGM 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
               IG +L                       +         Y RL  L++        K 
Sbjct: 62   TLCIGTRLVTRCG----------------FELATYPRDRAAYARLSRLLTLGKRRT-VKG 104

Query: 128  SVRICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               + L   L     +  I+L     GP  +    +    A                   
Sbjct: 105  KCDLGLEDVLDHAEGQVFILLPPADPGPDWQDTARHFCAAAPDGACHLA---------LA 155

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
            QR  G D  R  ++   A    LPL+AT ++L+ + E     D L  +   T +     R
Sbjct: 156  QRFDGQDGARVFRLTGFAGQTGLPLIATTDALYHTPERRALQDALTCIREKTTIDTAGFR 215

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +LK  +EM  +F+  PEA+ NT+ +ARR  F L   A   P     E  +  +
Sbjct: 216  LEAHAERHLKPPAEMARLFAAHPEAVANTMHLARRLRFSLDEIAYQYP----DEIMEPGE 271

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 L   +      R   G   K          +++EL +I ++ ++ YFL V D ++
Sbjct: 272  TAMQTLTRLSREKAVWRYPDGIPDK------VAAAIEYELTLIRQLDYAPYFLTVYDIVR 325

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
             A+   I +  GRGS A S   Y L IT +DP R  LLFERF++ +R   PD D+DF  +
Sbjct: 326  HARSRGI-LCQGRGSAANSTICYCLGITSVDPARIDLLFERFVSAERNEPPDIDVDFEHE 384

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG  R     T  + ++K A+RD+G+A+ +    +D L + + +  + 
Sbjct: 385  RREEVIQYIYGKYGRHRAGMTATVTTYRSKGAIRDIGKAMGLSPDLIDALARAVWHGSSA 444

Query: 486  PVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
             V    I        A   DP   RL   + + ++L G  RH S H  G VI    L  +
Sbjct: 445  GVPEADI-------RAMALDPDEQRLALAMRLVRELIGFPRHLSQHPGGFVITRDRLDDI 497

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+     +D  + +++   IE  GL+K D LGL  L+++ K+L  L +  G +  L+ +
Sbjct: 498  VPVMNAAMADRTMIEWDKDDIETLGLMKVDVLGLGMLSVIAKALALLREAYGRRESLASL 557

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
              +D   Y ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D + 
Sbjct: 558  QDEDPRVYDMICEADTVGVFQIESRAQMSMLPRLKPRQFYDLVIEVAIVRPGPIQGDMVH 617

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+ G+E+I    P +  +L  T GV ++QEQ M+IA + +G++ +EAD LRRAM  
Sbjct: 618  PYLRRREGRERIDYPSPELKAVLGRTLGVPLFQEQAMKIAVVAAGFTPAEADGLRRAMAT 677

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             +    + + + RF+ G  KNG +   A   F+ +  F +YGF +SHAA++A++ Y +AW
Sbjct: 678  FRHAGIIHEFRHRFLEGMIKNGYAPEFAERCFKQIEGFGEYGFPESHAASFALLVYVSAW 737

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----- 833
            +K HYP  F  A +  +        +  +DAR+  + I PP +N    D  +        
Sbjct: 738  LKCHYPDVFCTAILNAQPMGFYAPAQLVRDAREHGVDIRPPDINHSAWDCTLEAGSEPGP 797

Query: 834  ------------RIYYSLAAIKGV-GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                         +   L  +KG+     AR ++   A   F  +E    R     L+RR
Sbjct: 798  DVRPNRKGAHQYAVRLGLRQVKGLADAAAARIVVARQAGGHFICVESLMRRA---ALSRR 854

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-IT 939
             L+ L  A A+   G  R             A W           +FA  +G  +    T
Sbjct: 855  ALDQLANADAMRSLGQDRR-----------AASWQAAGLATSALPLFAAGEGAETANGET 903

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
                    +S +   + R LG    GHPL  ++  L + G+           G+ I LA 
Sbjct: 904  PPPLPDMPASEQVYRDYRSLGLSLKGHPLGFFRQALSERGLVEARALKTLPNGSQIDLAG 963

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V+ +Q+  +  G  I +VT  +         +
Sbjct: 964  LVLIRQRPGSASG--IVFVTLEDETGVANLIVW 994


>gi|227432231|ref|ZP_03914227.1| possible DNA-directed DNA polymerase [Leuconostoc mesenteroides
            subsp. cremoris ATCC 19254]
 gi|227352004|gb|EEJ42234.1| possible DNA-directed DNA polymerase [Leuconostoc mesenteroides
            subsp. cremoris ATCC 19254]
          Length = 1112

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1031 (31%), Positives = 525/1031 (50%), Gaps = 55/1031 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQ+ SSYSLL+   ++  I+         AIA+ D N ++ A+E+ ++    GI+P+
Sbjct: 2    YAPLQILSSYSLLKNPNTIEQIVQTAKTRGYEAIALADVNVMYGAIEWFRQTKKHGIKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L ++          G     T+  +VLL     GYQ L+ L S   +  QG     
Sbjct: 62   FGLTLMVN----------GLVNTATLFPVVLLAENQVGYQNLMWLSS-AKMTSQG----- 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                W   +     I +   +   + +       +           L  D  +  +  + 
Sbjct: 106  -DFQWETMVKHLDGINIVFPTDSELVQLISSG-YEEVNNYWQQLLTL-VDEHHSFIGINS 162

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVT 249
                  + ++ Q +      ++A ++  +L+ +D     VL A+ A+  +   K   +  
Sbjct: 163  QMAPQIQERLAQFSERTGGHMIALDDIDYLNSDDAFTTQVLKAIDANVKLDDIKILAQQQ 222

Query: 250  PDHYLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              H L++ + +   +     L  A  N   +  + +  ++     LP F           
Sbjct: 223  GSHILRDLAVVQQEYQGTEILKTAYINNELLVSKSNVSIEFKDTALPPFETPSG----VT 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +   L   AV+GL+ RL    ++       Y +RL  EL  I  + FS YFLIV D + +
Sbjct: 279  DSQFLEKIAVSGLKKRLQGHNVSLNL----YEERLQHELKTIEVLGFSDYFLIVWDIVNF 334

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A KN+I  GPGRGS AGS+ AY+L ITD+DPL+F+LLFERFLN +R+ MPD DID+   +
Sbjct: 335  AHKNHIQTGPGRGSVAGSLVAYSLQITDVDPLQFNLLFERFLNDERVQMPDIDIDWPPSK 394

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAH 485
            R+E+  Y+  KYG     QIITFG+L +K ALRDVGR   +P   + +L   IP      
Sbjct: 395  REELFTYLHQKYGKRNFGQIITFGTLASKQALRDVGRVFGLPTPTLSKLSASIPEGKNGR 454

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             VS+       + + A     +   LL+ + K+EGL ++ STHAAGIV+   PL Q +P+
Sbjct: 455  KVSIDDALKAPQLQNALRDIDNGRLLLQTALKIEGLPKNYSTHAAGIVLSANPLVQTLPV 514

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604
                     +TQF    +E+ GL+K D LGL+ L +L ++L +   +   + D++ I  D
Sbjct: 515  QSGT-EGRLLTQFEKDPVEQLGLLKIDILGLQNLAILSQALYYAQKELPERFDITKIVLD 573

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T  L     T G+FQ ES+G++  L  ++P   E I+A+ +LYRPGP  NI  +  R
Sbjct: 574  DAKTLALFAKGDTNGVFQFESAGIKNVLRKLKPATFEHIVAVNALYRPGPAQNIDKFIAR 633

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++GKE +    P +  +L  T G+I+YQEQVM +A+  +G++L EADVLR AM KK  ++
Sbjct: 634  RHGKEAVTISDPSLKSILALTFGIIVYQEQVMLVAESYAGFTLGEADVLRSAMSKKKVDK 693

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M K  E+FI GA KNG  +  A  IF  + +FA+YGFN+SHA AY+ ++++ A++K HYP
Sbjct: 694  MQKLHEQFIKGALKNGHDQEQAELIFSYIDEFANYGFNRSHAVAYSKLAFELAYLKAHYP 753

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            V F  A +   +   +K++++  +A+   I ++ P VN     +   +N++   L  I+G
Sbjct: 754  VAFFTALLNANLGEQKKVQQYVSEAKIRGIVVLAPDVNKSYKFWTSIENQLQMGLNNIRG 813

Query: 845  VGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            V T     ++E    +  F +++ F  R+  K   R VLE LV+AGALD FGY+R +L++
Sbjct: 814  VRTDFVTSVLEERQNNGSFQTIQSFVRRLPDKMRKREVLEQLVYAGALDSFGYNRRELIE 873

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            ++ ++ + A              F +      ++  ++K+     S R + E+ V+G   
Sbjct: 874  NIASLIEGAS-------------FGN---LILEETKIKKYDDFALSDRLKKEKEVIGVNL 917

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            SGHPLD Y   + + G   + +    ++ + + ++ A+V S +Q +T+KG  + +V  S+
Sbjct: 918  SGHPLDTYVDFILENG---FSQIGNVVQPSQVEKIIAIVDSIRQIRTKKGDDMAFVKVSD 974

Query: 1023 PAKEYEANFFP 1033
               E     FP
Sbjct: 975  TTGEISVTIFP 985


>gi|289661570|ref|ZP_06483151.1| error-prone DNA polymerase [Xanthomonas campestris pv. vasculorum
            NCPPB702]
          Length = 1083

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/1055 (25%), Positives = 463/1055 (43%), Gaps = 89/1055 (8%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q  +  P++  L   S +S L GA S   +  +       A+AITD  +L   +   + 
Sbjct: 39   AQVADGLPAYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEA 98

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            +   G++ I+G +  +                      VLLV  A GY +L  L++    
Sbjct: 99   SRVTGVRLIVGSEFTLVDGTRF----------------VLLVENAHGYPQLCALITTARR 142

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                K + R+  + ++    +  + L       +   +       AE+      ++ G+R
Sbjct: 143  A-ASKGAYRLGRAEVEAQFRD--VALG------VFALWLPGVQPQAEQGA-WLHQVLGER 192

Query: 182  LYVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ ++ HR  D     QV+Q LA    +  +A+ +       +    D L A+ H+  +
Sbjct: 193  AFLAVELHREQDDAARLQVLQVLAQQLGMTALASGDVHMAQRRERIVQDTLTAIRHTLPL 252

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +          + +L+ R  + +I+ D    L+  VE+A+RC+F L   +   P+ +  E
Sbjct: 253  ADCGAHLFRNGERHLRTRRALGNIYPDA--LLQAAVELAQRCTFDLSKISYTYPKELVPE 310

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                     + LR    AG+  R   G  AK       R+ ++ EL +IA  K+  +FL 
Sbjct: 311  G----HTPTSYLRQLTEAGIRKRWPCGISAK------VREDIEKELALIALKKYEAFFLT 360

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++A++ NI +  GRGS A S   YAL IT ++P    LL  RFL+  R   PD D
Sbjct: 361  VQDVVRFAREQNI-LCQGRGSSANSAVCYALDITAVNPDETRLLMARFLSEKRDEPPDID 419

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EV++YV NKYG ER A   T    + K+A+RDV +A  +P  Q+  L    
Sbjct: 420  VDFEHERREEVLQYVYNKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCY 479

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                      Q I +        LA+P ++++L +++ L    RH S H  G VI D PL
Sbjct: 480  GWGNGETPMEQRIEE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPL 535

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDL 598
            S LVP+     +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    +
Sbjct: 536  SLLVPVENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYSI 595

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
            + +P DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D
Sbjct: 596  ATLPGDDLPTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGD 655

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+ G+E +    P ++ +LK T GV ++QEQVM++    + Y+ SEAD LRR+
Sbjct: 656  MVHPYLRRRQGREDVNYPSPEVEDILKPTLGVPLFQEQVMELLMHAADYTESEADNLRRS 715

Query: 717  MGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M    +  +M++ + R        G +      IFE +  F  YGF +SHAA++A + Y 
Sbjct: 716  MAAWRRGGDMEQHRARVRERMQGKGYASIFIDQIFEQIKGFGSYGFPQSHAASFAKLVYA 775

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-----QFNIQIMPPSVNTPCVDFKV 830
            + W+K H P  F    +  +        +  QDAR     +  ++++P  V     D  +
Sbjct: 776  SCWLKRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWDNTL 835

Query: 831  GDNRIY-------------YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
               R +               +  + G+    A+ I+ A   + F  + D C R     L
Sbjct: 836  VGGRPWRSDDDPGEQPAIRLGMRQVAGLSEVVAQRIVAARRQRAFADIGDLCLRA---AL 892

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            + +   +L  AGAL     +R     ++  +                 +           
Sbjct: 893  DEKARLALAEAGALQGMVGNRNAARWAMAGV------------EARRPLLPGSPEERPVA 940

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
                +   E        + R +G     HP+ + +P +R+  I G  E      G+ + +
Sbjct: 941  FEAPRAGEE-----ILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRSHGSGVHV 995

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A +V  +Q+  T KG+   +VT  +         +
Sbjct: 996  AGLVTQRQRPATAKGT--IFVTLEDEHGMINVIVW 1028


>gi|325921687|ref|ZP_08183521.1| DNA polymerase III, alpha subunit [Xanthomonas gardneri ATCC 19865]
 gi|325547827|gb|EGD18847.1| DNA polymerase III, alpha subunit [Xanthomonas gardneri ATCC 19865]
          Length = 1083

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/1048 (25%), Positives = 465/1048 (44%), Gaps = 89/1048 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G++
Sbjct: 46   PAYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRATGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                      VLLV  A GY +L  L++        K +
Sbjct: 106  LIVGSEFTLVDGTRF----------------VLLVENAHGYPQLCALITTARRA-ASKGT 148

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + ++    +         +  +   +   +   AE+     +++FG+R ++ ++ 
Sbjct: 149  YRLGRAEVEAQFRD--------VAPGVFAVWMPGAQPQAEQGA-WLQQVFGERAFLAVEL 199

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D   R   +  LA    +  +A+ +       +    D L A+ HS  +++     
Sbjct: 200  HREQDDAVRLLALQLLAQQLGMTALASGDVHMAQRRERIVQDTLTAIRHSLPLAECGAHL 259

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  + +I+ D    L+ +V +A+RC+F +       P+ +  E       
Sbjct: 260  FRNGERHLRTRRALGNIYPDA--LLQASVGLAQRCTFDISKLEYTYPKELVPEG----HT 313

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     G+  R   G  AK       R  ++ EL +IA   +  +FL V D +++
Sbjct: 314  PASYLRLLTETGMRERWPNGTPAK------VRADIEKELALIAHKNYEAFFLTVQDVVRF 367

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF  +R
Sbjct: 368  ARDQHI-LCQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHER 426

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV +KYG ER A   T    + K+A+RDV +A  +P  Q+  L           
Sbjct: 427  REEVLQYVYSKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGDT 486

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               Q I +        LA+P ++++L +++ L    RH S H  G VI D PLS LVP+ 
Sbjct: 487  PMEQRIEE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSMLVPVE 542

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                ++  + Q++   +E   L+K D L L  LT ++K+L+ +   RG    ++ +P +D
Sbjct: 543  NAAMANRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLELVSGHRGRDYTIATLPGED 602

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
              TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  
Sbjct: 603  APTYKMIQRADTVGVFQIESRAQMAMLPRLKPVVFYDLVIEVAIVRPGPIQGDMVHPYLR 662

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK- 722
            R+ G+E++    P ++ +LK T GV ++QEQVM++    + Y+ SEAD LRR+M    + 
Sbjct: 663  RRQGREEVNYPSPEVEEILKPTLGVPLFQEQVMELLMHAAEYTESEADNLRRSMAAWRRG 722

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             +M++ + R        G + T    IFE +  F  YGF +SHAA++A + Y + W+K H
Sbjct: 723  GDMEQHRTRVRERMQNRGYASTFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRH 782

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDAR-----QFNIQIMPPSVNTPCVDFKVGDNRIY- 836
             P  F    +  +        +  QDAR     +  ++++P  V     +  +   R + 
Sbjct: 783  EPAAFACGLLNAQPMGFYSASQIVQDARRGSPERARVEVLPVDVLHSVWNNTLVGGRPWC 842

Query: 837  ------------YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
                          +  + G+    A  I+ A A + F  + D C R     L+ +   +
Sbjct: 843  SDEDPGEQPAIRLGMRQVAGLSEGVATRIVAARAQRGFADIGDLCLRA---ALDEKARLA 899

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  AGAL     +R     ++  +                 +     G+  ++    +F 
Sbjct: 900  LAEAGALQGMVGNRNAARWAMAGV------------EARRPLL---PGSPEERPV--EFE 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
               +      + R +G     HP+ + +P +R+  I G  E      G+ + +A +V  +
Sbjct: 943  APRAGEDILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRSHGSGVHVAGLVTQR 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            Q+  T KG+   +VT  +         +
Sbjct: 1003 QRPATAKGT--IFVTLEDEHGMINVIVW 1028


>gi|254512034|ref|ZP_05124101.1| putative DNA polymerase III alpha subunit subfamily [Rhodobacteraceae
            bacterium KLH11]
 gi|221535745|gb|EEE38733.1| putative DNA polymerase III alpha subunit subfamily [Rhodobacteraceae
            bacterium KLH11]
          Length = 1127

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/1060 (25%), Positives = 450/1060 (42%), Gaps = 86/1060 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-----A 64
             +  L V ++++ L GA     ++ + A     AIAITD N+L   +            A
Sbjct: 27   GYAELCVTTNFTFLTGASHPEELVTRAAELGLKAIAITDRNSLAGVVRAWVAMKELRREA 86

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV------------------STA 106
                PI   Q  +D     ++ +      P  P +  L+                     
Sbjct: 87   ENAVPI-RSQHRMDSCSRQEIGHPQPISKPDAPRLPQLIVGCRLVLRDSSVDWLALPRDR 145

Query: 107  EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
              Y RL  L++       GK    + L  L     +G+I++    +G           + 
Sbjct: 146  PAYARLTRLLTLGKRR-AGKGECHLDLQDLL-GACQGMILIALPQAG----------LEQ 193

Query: 167  AEKRLLTFKKLFGDRLYVN-LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
            A   +   ++ F + +++  + R+ G D+   +   Q A     P+VA  + L       
Sbjct: 194  AIPDIQRIRRRFPNAVFLGAVPRYDGSDQAYLAACAQTAQKASAPMVAVGDVLMHRASRR 253

Query: 226  EAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
            +  DVL  +     + Q         +  LK  ++M  +F D P AL  T+EIA RCSF 
Sbjct: 254  QLADVLTCMREHITIDQIGTHALPNAERRLKGYADMARLFQDHPGALRRTLEIADRCSFD 313

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            L   +   P  I  E     +  +  L   A AGL+ R   G   +  +       +  E
Sbjct: 314  LSELSYEYPDEIASE-----ETPQARLERLARAGLKRRYPGGPPERALNL------MQKE 362

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L ++A + F  YFL V D +Q+A+   I +  GRGS A S+  Y L ITD+ P   +++F
Sbjct: 363  LALVADLDFPAYFLTVHDIVQFARSQGI-LCQGRGSAANSILCYLLGITDVSPDMIAMVF 421

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERF++  R   PD D+DF  +RR+EVI+++  KYG  R     T    +++AA+R+VG+ 
Sbjct: 422  ERFVSKYRGEPPDIDVDFEHERREEVIQWIYQKYGRHRAGLCATVTHFRSRAAIREVGKV 481

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLY 522
            + +       L   I       V      D  R +E  L   D  + + + +  ++ G  
Sbjct: 482  MGLSQDVTAGLSGQIWGMTNGGV------DPERLQELGLNLEDRRLMQTIRLIGEIIGFP 535

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            RH S H  G VI    L +L P+      D  V +++   I+  G++K D LGL  L+ +
Sbjct: 536  RHLSQHVGGFVITRGRLDELSPIENAAMEDRTVIEWDKDDIDALGILKVDVLGLGMLSCV 595

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            +K+ D + Q     + ++ +P  D  TY +L     +G+FQ+ES      L  M+P    
Sbjct: 596  RKAFDLMQQHEGETLSIATVPQGDEATYDMLCAADAVGVFQVESRAQMNFLPRMRPREFY 655

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            D++  V++ RPGPI  D +  Y  R++G EK     P ++ + + T GV ++QEQ MQIA
Sbjct: 656  DLVIEVAIVRPGPIQGDMVRPYIRRRHGLEKPEPFGPKLEKVTERTLGVPLFQEQAMQIA 715

Query: 700  QLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
             + +G++  EAD LRR++   +    +   +++FISG  KNG    IA   F  +  FAD
Sbjct: 716  VVGAGFTAEEADHLRRSLASFRRMGTIGTFEDKFISGMLKNGYEPEIAKRCFSQIEGFAD 775

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGF +SHAAA+A+++Y +AW+K H+P  F  A +  +        +  +DAR+  ++I P
Sbjct: 776  YGFPESHAAAFAMLAYVSAWLKCHHPAIFACALLNSQPMGFYAPAQIVRDAREHGVEIRP 835

Query: 819  PSVNTPCVDF-----KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
              VN    D        G   +      IKG     A  I+ A  +  +   E    R  
Sbjct: 836  VCVNASTWDNLLERRADGVLALRLGFRQIKGFKQEDADWIVAARGNG-YPDPETLWLRAG 894

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             +     VL  L  A A      +R   L  +  I          R+     +F      
Sbjct: 895  LR---PDVLTRLAEADAFSGMDLTRRDALWHVKAI----------RSQTPLPLFNDPIDG 941

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
             S         V +       +          HP+++ +P +   G+  +        G 
Sbjct: 942  ESISEPQVNLPVMHLGEEVVEDYVSTRLTLRSHPMELLRPSIP--GLVPHAALQDIPLGR 999

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  +  +V+++Q+  T  G  + ++T  +         +P
Sbjct: 1000 H-SVCGLVITRQRPGTASG--VIFLTLEDETGVSNVVVWP 1036


>gi|114798985|ref|YP_761161.1| putative DNA polymerase III subunit alpha [Hyphomonas neptunium ATCC
            15444]
 gi|114739159|gb|ABI77284.1| putative DNA polymerase III, alpha subunit [Hyphomonas neptunium ATCC
            15444]
          Length = 1087

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/1044 (24%), Positives = 440/1044 (42%), Gaps = 77/1044 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  L V +++S L+GA   + ++ + A     AI I D N L   +     A  AG++ 
Sbjct: 3    AYAELAVTTNFSFLQGASHAHELVRRAADLGHVAIGIADRNTLAGVVRAHVAAKEAGLRL 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G +L                     P I+        Y RL  L+S+  +    K   
Sbjct: 63   LVGARLVPADG----------------PEIIAYPMNRAAYGRLSRLLSKGKMR-AAKGEC 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I +S + +     + ++    +  +     F  +     R    +     R       +
Sbjct: 106  HITVSDILKASEGQIFIVMPPEALCLP----FGRTLDEIARAAPGRTYLAARY-----TY 156

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
             G +R R  ++ +LA    + L+ATN+ L+ + E     DVL  +     +         
Sbjct: 157  SGRNRERIFRLAELAARAGVALMATNDVLYHAPERRPLQDVLTCIREHHTLDTAGFLLEA 216

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + +LK  +EM  +F     ++  TVEI+ RC F L   A   P              +
Sbjct: 217  NGERHLKGGAEMARLFKGFESSVARTVEISERCRFSLDELAYEYPDEPVPPG----STPQ 272

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L      G   R   G   K        +++  EL +I ++ ++ YFL V D +QWA+
Sbjct: 273  EHLERLTWEGASGRYPGGVPEK------VERQIRDELRIIDQLSYAPYFLTVNDIVQWAR 326

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              NI +  GRGS A S   Y L IT IDP    LLF RFL+P+R   PD D+DF  +RR+
Sbjct: 327  SQNI-LCQGRGSAANSAICYCLGITSIDPTLTKLLFARFLSPERKEPPDIDVDFEHERRE 385

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YV  +YG  R A   T  S ++++A+R+V +AL +       L   +    +  + 
Sbjct: 386  EVIQYVYRRYGQHRAALTATVISYRSRSAIREVCKALGLSDDISAALANGVWGSWSDTLP 445

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
               IA+         A+P + R ++++++L G  RH S H  G V+    L + VP+   
Sbjct: 446  DNRIAE----AGLDPANPLIRRAVQLARQLLGFPRHLSQHVGGFVLTRGDLIETVPIGNA 501

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHE 607
               D    +++   I+  G++K D L L  LT ++K+ D L   +     L+ +  +D  
Sbjct: 502  AMRDRTFIEWDKDDIDALGIMKVDVLSLGMLTCIRKAFDLLTEHKNTLHTLASVEQEDRA 561

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRK 665
            TY +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI    +  Y  R+
Sbjct: 562  TYDMLCKGDSIGVFQVESRAQMAMLPRLRPRTYYDLVIEVAIVRPGPIQGNMVHPYLRRR 621

Query: 666  NGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
             G E +    P         ++ +L  T GV ++QEQ MQIA   + +S  EA+ LRRAM
Sbjct: 622  KGIEAVSYPRPSPDQGPPDELESILSRTLGVPLFQEQAMQIAIDAARFSADEANGLRRAM 681

Query: 718  GK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
               +    + + +E  +S   K G     A + F+ +  F +YGF +SHAA++A++ Y +
Sbjct: 682  ATFRNVGTIHQYEEMLVSNLIKRGYDPVFAKSCFDQIKGFGEYGFPESHAASFALLVYVS 741

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------ 830
            +W+K H+P  F AA +  +        +  +DA+   +++ P  VN    D  +      
Sbjct: 742  SWIKCHHPDVFCAALLNSQPMGFYAPAQIVRDAQAHGVEVRPVDVNYSDWDNILEPDERA 801

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             G   +      + G+       +M           E     +   +L R VLE L  A 
Sbjct: 802  SGSFAVRLGFRQVDGLNREDMERLMVRRGTG----YETPDRLMQHAQLTRSVLERLAAAD 857

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A      +R + L            V      +   +FA    +     T     V   S
Sbjct: 858  AFGSMSLTRREALW----------KVRGEAPQQTLPLFATAGLSEQGSETGITLPVIPPS 907

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 + +  G    GHP+   + +  + G+    ++     G  ++ + +V+ +Q+  T
Sbjct: 908  EHVIQDYQTTGLSLKGHPMHFLRSLHARRGVLSTHDAARLPNGCRVQTSGIVLVRQRPGT 967

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
              G  + ++T  +         +P
Sbjct: 968  ASG--VVFITLEDETGIANLVVWP 989


>gi|81301008|ref|YP_401216.1| DNA polymerase III subunit alpha [Synechococcus elongatus PCC 7942]
 gi|81169889|gb|ABB58229.1| DNA polymerase III, alpha subunit / Intein [Synechococcus elongatus
           PCC 7942]
          Length = 870

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/786 (38%), Positives = 449/786 (57%), Gaps = 35/786 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-IQ 68
           SFV L +HS YSLL+GA  L +++ +      PAIA+TD   ++ A+E  +     G I+
Sbjct: 2   SFVGLHMHSDYSLLDGASQLPDLVARAKELGMPAIALTDHGVMYGAIELLKVCKNQGNIR 61

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ- 127
           PIIG ++ +     +        P       ++L    +GYQ L++L S  +L     + 
Sbjct: 62  PIIGNEMYV-----INSPIDDPNPRVRKYHQIVLAKNKKGYQNLVKLTSISHLQGFKGRG 116

Query: 128 ---SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 I    L++   EGLI+ +    G I +A   +   VA +    +++ FG+  Y+
Sbjct: 117 IFARPCIDKEHLEKY-REGLIVTSACLGGEIPQAILQSRPDVARRVAAWYQERFGEDFYL 175

Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +Q H    DR    ++V++A    + LVATN+S F+S  D EAHD L+ +    +V + 
Sbjct: 176 EIQDHGSPEDRIVNVEIVRIAQELGIELVATNDSHFISCFDVEAHDALLCIQTGKLVVED 235

Query: 244 DRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIE 297
            R R +   YLK+  EM  +F D      + +A+ NT+ IA +      +  P +P F  
Sbjct: 236 KRLRYSGTEYLKSAEEMHQLFRDHLPDDVIAKAIANTLVIASKIEDYNILGEPKIPTFPV 295

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            +       EE  +   A  GL  RL           + YR RL++E+ ++  M F+ YF
Sbjct: 296 PDG----YNEETYMAEVARQGLAERLNCDRYEDCE--EAYRDRLEYEIKMMHEMGFASYF 349

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           L+V D+I++A+ NNIPVGPGRGS AGS+ AY + IT+IDP+   LLFERFLNP+R SMPD
Sbjct: 350 LVVWDYIKFARDNNIPVGPGRGSAAGSLVAYCMGITNIDPVHHGLLFERFLNPERKSMPD 409

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D DFC D+RD+VI YV  KYG +RVAQIITF  + +KA L+DV R L +PY + DR+ K
Sbjct: 410 IDTDFCIDQRDKVIDYVTKKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADRMAK 469

Query: 478 LIPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
           LIP     P  L+ +  D      F+E    D  V   ++++ ++EG  +    HAAG+V
Sbjct: 470 LIPVARGKPAKLKVMISDQTPAPEFKEKYEKDARVKHWVDMALRIEGTNKTFGVHAAGVV 529

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
           I   PL ++VP+ R+      +TQ+ M+ IE  GL+K DFLGL+ LT++QK++D + +  
Sbjct: 530 ISAVPLDEIVPLQRN-NDGQVITQYYMEDIEACGLLKMDFLGLRNLTMIQKAIDLVQETS 588

Query: 594 -VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
              +D   +P DD +TY LL      G+FQLESSGMRQ +  ++P  +EDI ++++LYRP
Sbjct: 589 GQAIDPDRLPMDDPKTYQLLAKGDLEGVFQLESSGMRQIVRDLKPSNLEDISSILALYRP 648

Query: 653 GPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           GP+D   I  + NRK+G+E I     ++ P+L ET G+++YQEQ+M+IAQ + GY+L EA
Sbjct: 649 GPLDAGLIPKFINRKHGREAIDYADQMLQPILNETYGIMVYQEQIMKIAQDMGGYTLGEA 708

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF---NKSHAA 767
           D+LRRAMGKK   EM K +  F+ GA KNG+++ +A  +F+ +  FA+Y      +    
Sbjct: 709 DLLRRAMGKKKMSEMVKHQSTFVEGAKKNGVAEKVAAELFDQMVLFAEYCLAADTEVLTV 768

Query: 768 AYAVIS 773
            Y  I+
Sbjct: 769 EYGPIA 774


>gi|116626077|ref|YP_828233.1| DNA polymerase III subunit alpha [Candidatus Solibacter usitatus
            Ellin6076]
 gi|116229239|gb|ABJ87948.1| DNA polymerase III, alpha subunit [Candidatus Solibacter usitatus
            Ellin6076]
          Length = 1014

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/1035 (27%), Positives = 478/1035 (46%), Gaps = 82/1035 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
             P +V L   S++S LEG+     +    A    PA+A+ D N ++ +  F   A  AG+
Sbjct: 2    PPPYVELHARSAFSFLEGSCLPEELAGACANFGMPAMALLDRNGVYGSPRFHLAAKKAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +  IG ++                      +  LL ++ EGYQ L  LV+RM L    K 
Sbjct: 62   RAHIGSEITCTNG----------------LTYPLLAASREGYQNLCRLVTRMKLR-AAKG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                 L  L E  + GL+ +T                    +RLL         LY  LQ
Sbjct: 105  EGAATLEELAEF-SRGLLCITPHPD----------------QRLLEI--YGRHNLYAELQ 145

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH    +     + V+LA    +P++ATN+  +      E  DV   + +   ++   R 
Sbjct: 146  RHCNREEEAGNQRTVELARRLGIPIIATNHPAYAIPAQRELLDVFTCIRNKVTLTTAGRL 205

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + ++K   EM  +F+DLPEA+ NT+EI+ R  F L       PR+   + +    
Sbjct: 206  LERNNERHVKTPDEMARLFADLPEAIANTLEISSRLDFTLADLGYEFPRYPVPDGE---- 261

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             + + LR  A  G   R                 +++ EL +I R++ +GYFLIV D ++
Sbjct: 262  TQISFLRKLADEGARRRYRPYYERARL-------QVERELTMIERLRLAGYFLIVWDIVR 314

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC-Q 424
            + K+++I +  GRGS A S   YAL IT +DP+   LLFERFL+ +R   PD D+D    
Sbjct: 315  FCKEHDI-LAQGRGSAANSAVCYALEITAVDPVGMDLLFERFLSEERGEWPDIDLDLPSG 373

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D+R++ I+YV  ++G    A      + + ++A R+VG+AL    S ++ L KL+    A
Sbjct: 374  DKREQAIQYVYQRFGQLGAAMTANVITYRGRSAAREVGKALGFEISTLENLTKLV---RA 430

Query: 485  HPVSLQAIADDSRFREAR--LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                      D +FREA   +A+P V +  E+ Q  + L RH   H+ G+V+    L  +
Sbjct: 431  WEWKDPKDTTDRQFREAGFDIANPRVRKFFELYQMAQDLPRHLGQHSGGMVVCQGALDSV 490

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+         V Q++ +     G++K D LGL  + +++  L         VD++ +P
Sbjct: 491  VPLEPASMPGRVVVQWDKEDCADLGIVKVDLLGLGMMAVIEDCLKM----CPDVDIAHLP 546

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             DD + Y  L    T+G+FQ+ES      L  M+P    D++  V++ RPGPI    +  
Sbjct: 547  QDDPKVYGALQRADTIGMFQVESRAQMSCLPRMKPVRFYDVVVQVAIIRPGPIVGKMVHP 606

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y NR+ G+E +  +HP ++P+L+ T GV ++QEQ++++A + +G+S  EA+ LRRAMG K
Sbjct: 607  YLNRRQGREVVDCLHPSLEPVLRRTLGVPLFQEQLLRMAMIAAGFSGGEAEELRRAMGFK 666

Query: 721  IKEE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
              E+ M + + +  +G ++ GI+      I   +  FA YGF +SHAA++A+++Y +AW+
Sbjct: 667  RSEKRMQEIEIKLRAGMTRKGITGESQEAIVRSITSFALYGFPESHAASFALLAYASAWL 726

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYS 838
            K H   EF  A +  +           +DA++  ++++P  V        V  ++     
Sbjct: 727  KCHRLAEFTCAMLNNQPMGFYSPAILIKDAQRHGLRVLPVDVTQSEWLCTVVSDQCMRLG 786

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L   +G+     + I+ A A++PF S++D   RV  ++L +  L  L   GAL+      
Sbjct: 787  LRYARGLREQAGQAILRARAERPFTSVDDLAVRV--RELRKDELNRLAEIGALNPLEK-- 842

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
                      ++ A W  +        + AH + T      +      +   R   + R 
Sbjct: 843  --------QHRRDALWQSQRAILPVGPLLAHLEETGEPSPLVP----MDHEERLWADYRG 890

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             G     HP+   +  +  +G+           G+ +R+A  V+ +Q+  T KG    ++
Sbjct: 891  TGLTVGKHPMAWRRIEMNALGVVPAMHLARVRDGSVVRIAGSVIVRQRPGTAKG--FVFL 948

Query: 1019 TFSEPAKEYEANFFP 1033
            +  +      A   P
Sbjct: 949  SMEDETGIMNAIVAP 963


>gi|326317329|ref|YP_004235001.1| DNA polymerase III subunit alpha [Acidovorax avenae subsp. avenae
            ATCC 19860]
 gi|323374165|gb|ADX46434.1| DNA polymerase III, alpha subunit [Acidovorax avenae subsp. avenae
            ATCC 19860]
          Length = 1076

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/1047 (24%), Positives = 450/1047 (42%), Gaps = 78/1047 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S   GA     ++ + A     A+A+TD  ++   +     A   G++
Sbjct: 20   PGYAELHCLSNFSFQRGASHPFELVQRAAELGYAALALTDECSVAGVVRAHTAARQCGLK 79

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ 127
             I+G +                        +V L     G+  L E +S    +  +G+ 
Sbjct: 80   LIVGSEFAC-----------------GDVRLVALARNETGWGNLCEFISDARRIAPKGEY 122

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             V     + +  G E L+         +D        +    +     +  G   ++ ++
Sbjct: 123  RVHAGSDFARLQGCEVLVAPRRDRLSALD----PGGIEATVAQACAPLRAQGIHPWLAVE 178

Query: 188  RHRGYDRYRESQVVQLA-YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   D     + ++ A    +LPLVA  +      +     DV+ AV     VS+    
Sbjct: 179  LHTAPDDAAWLEALEHAGRALDLPLVAAGDVHMHVLQRKPLQDVVTAVRLGRPVSECGFA 238

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             +   +  L+ R  +   +   P  L  T+E+A RC+F L       PR    E     +
Sbjct: 239  LQAHGERRLRPRMRLAGFYP--PALLAATLEVAARCTFSLDEIRYRYPRETVPEGMTPGE 296

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 L     AG   R  QG         + R+++  EL +IA  ++  YFL V D ++
Sbjct: 297  A----LAAYTEAGARERYPQGV------PPEVREQIAKELELIAHCRYEMYFLTVHDIVR 346

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
             A++  I +  GRGS A S   Y L IT +DP +  LLFERF++ +R   PD D+DF  D
Sbjct: 347  EARRRGI-LCQGRGSAANSAVCYCLGITAVDPTKTRLLFERFISKERDEPPDIDVDFEHD 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG ER A      + + ++ALRDVG+AL +  + VD   K   +    
Sbjct: 406  RREEVIQYIYGKYGRERAAIAAVVITYRTRSALRDVGKALGVAPAVVDAFAKD-HHWFDE 464

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++   + + +    A +   +    LE++Q+L G  RH S H  G V+ +  L++LVP+
Sbjct: 465  DIAAGRLQELAAGLGAPIGAHTAALWLELAQELRGFPRHLSQHVGGFVLTEGKLTRLVPV 524

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFD 604
                     + Q++   ++   L+K D L L  L+ L+++L    A RG   +L+ IP +
Sbjct: 525  EPASMDGRSIIQWDKDDLDDMHLMKVDVLALGMLSALRRALGLRAALRGQAWELADIPRE 584

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
            D  TY ++    T+G+FQ+ES      L  ++P  + D++  V++ RPGPI   +V+   
Sbjct: 585  DPATYDMICAADTVGVFQIESRAQMSMLPRLKPRELYDLVVEVAIVRPGPIQGGMVHPYL 644

Query: 663  ---NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                R+  KE +   H  + P L+ T GV I+QEQVMQIA + + ++   AD LRR+M  
Sbjct: 645  QARERRARKEALELEHEDLRPALERTLGVPIFQEQVMQIAMIAADFTPGMADDLRRSMAA 704

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K +  + + ++  + G  KN  S   A  I++ +  F +YGF +SHA ++A+++Y ++W
Sbjct: 705  WKRRGGVHRFEQVLMEGMRKNEYSPEFAQRIYQQMLGFGEYGFPESHAYSFALLAYASSW 764

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831
             K H P  FL A +  +        +  QDAR+  ++++P        D  +        
Sbjct: 765  FKRHEPACFLVALLNSQPMGFYTPSQLVQDARRHGLRVLPADAAHSDWDSTLEGPAAPLP 824

Query: 832  -----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                    +   L  + G G   A  +M A    PF  ++D   R    + +R+ L++L 
Sbjct: 825  GLQQAQPAVRLGLRLVAGYGPEAAARLMRARDAGPFADVQDLALRA---RQDRQDLQALA 881

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             A AL      R Q +      ++    ++             E       + L +    
Sbjct: 882  AADALRSLAGHRRQQMWDAAAQRRAPALLQ-------------EAPVHEAPLALPEAPEG 928

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               V    +    G     HP+ + +  +    I+  +   A   G  +R   +V  +Q+
Sbjct: 929  EEIV---FDYAATGLTLRRHPMALLRERMACWRIQAAQALQAVPHGRRVRACGIVTVRQR 985

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + KG+   +VT  +         +P
Sbjct: 986  PGSAKGTM--FVTLEDETGTVNVIVWP 1010


>gi|254563941|ref|YP_003071036.1| error-prone DNA polymerase, DNA polymerase III subunit alpha
            [Methylobacterium extorquens DM4]
 gi|254271219|emb|CAX27231.1| error-prone DNA polymerase, DNA polymerase III, alpha subunit
            [Methylobacterium extorquens DM4]
          Length = 1067

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/1034 (26%), Positives = 448/1034 (43%), Gaps = 70/1034 (6%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             LQV + +S L GA S   +    +    PA+ +TD  +L   +   Q A   G++ ++G
Sbjct: 5    ELQVTTHFSFLRGASSPEELFSAASLLGIPALGVTDHGSLAGMVRAHQAAKVTGVRLVVG 64

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            C+LD+D                    +++  +    Y RL  L+S       GK   R+ 
Sbjct: 65   CRLDLD---------------DLSSPLLVYPTDRAAYGRLCRLLSLGKARG-GKGRCRLT 108

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RG 191
               L+E       +L     G                 L  FK LFG R    L R  R 
Sbjct: 109  WRDLEEWQEGFFAILLAEQPG-----------SALPNDLARFKGLFGARASCALTRRFRP 157

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250
             D  R   +   A    +P VAT + L+         DV+  +     + +    +    
Sbjct: 158  DDADRLDALAAAARAARVPTVATGDILYHVAGRRRLQDVVTCIRLGLTIDRAGFAKERHA 217

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            D +LK  +E   +F+  PEAL   VEIA  C F L   A   P     E  +     +  
Sbjct: 218  DRFLKPPAETARLFARFPEALARAVEIAAACRFSLDDLAYTYPT----ESREDGLSPQER 273

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L     AG   R   G        +   ++L  EL++I R+ ++ YFL V   + +A + 
Sbjct: 274  LDVLTWAGAARRYPAGV------PEAVTRQLHHELDLIGRLAYAPYFLTVESIVAFANRE 327

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I +  GRGS A S   + L IT IDP R +LLFERF++  R   PD D+DF  +RR+EV
Sbjct: 328  KI-LCQGRGSAANSAVCFCLGITSIDPTRQNLLFERFVSEARREPPDIDVDFEHERREEV 386

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+++   YG  R A        +++ ALR+VG+ + +P      L ++  +  +  V   
Sbjct: 387  IQWIFQTYGRHRSALTAIVSRFRSRGALREVGKVMGLPEDVTGALNRMTWSWSSEGVG-- 444

Query: 491  AIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                +   RE  L   D  +   L I+++L G  RH S H  G V+    L +LVP+   
Sbjct: 445  ----ERELRELNLNPDDRRLRLTLAIARELIGTPRHLSQHPGGFVLTLDRLDELVPVEPA 500

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
              +D  V +++   I+    +K D LGL  L  L+++ D LA+ +    DL+ IP  D  
Sbjct: 501  AMADRQVIEWDKDDIDALKFMKVDVLGLGMLGCLRRAFDLLAEVKNDPHDLASIPSKDEP 560

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRK 665
            T+ ++    TLG+FQ+ES      L  M+P    D++  V++ RPGPI  D +  Y  R+
Sbjct: 561  TFAMIRRADTLGVFQIESRAQMAMLPRMKPKEFYDLVIEVAIVRPGPIQGDMVHPYLRRR 620

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEE 724
             G E++    P +  +L++T GV ++QEQ MQ+A + +G+S +EAD LRR+M   K    
Sbjct: 621  EGLEEVTYPTPELKAVLEKTLGVPLFQEQAMQVAMVGAGFSATEADELRRSMATFKFTGG 680

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + + + R + G   NG ++  A   F+ L  F  YGF +SHAA++A+++Y ++WMK H+P
Sbjct: 681  VHRFQSRLVEGMVANGYARDFAERTFKQLEGFGSYGFPESHAASFALLAYASSWMKCHHP 740

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-------NRIYY 837
              F AA +  +        +  +DAR   ++I P  VN    D  +           +  
Sbjct: 741  DVFCAALLNAQPMGFYAPAQIVRDARAHGVEIRPLDVNFSQWDCTLETLGAGRKLFAVRL 800

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L    G+       ++ A   +PF SL +   R     +    L  LV A A    G +
Sbjct: 801  GLRLANGLAERDGHRLVAARGGRPFASLPELADRA---GIPAASLTCLVRADAFRSLGLN 857

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R +   ++  ++     +    +     I A    T    ++L   S     V    +  
Sbjct: 858  RREAAWAVKALRPDPLPLFAALSA---PIQAEPAQTAEPAVSLPAMSAGGEVV---ADYC 911

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G     HPL   +  L  +G +          G  I +A +V+ +Q+  + KG+   +
Sbjct: 912  ANGLSLRAHPLAFLRETLTALGARPCAALERAGNGAPIVVAGIVLMRQRPGSAKGTM--F 969

Query: 1018 VTFSEPAKEYEANF 1031
            +T  +         
Sbjct: 970  MTLEDETGIANLIV 983


>gi|323340850|ref|ZP_08081101.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus ruminis
            ATCC 25644]
 gi|323091701|gb|EFZ34322.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus ruminis
            ATCC 25644]
          Length = 1120

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/1061 (31%), Positives = 532/1061 (50%), Gaps = 96/1061 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  LQV S+YSLL+  L +++ ++  +     A+ +TD + L+ A EF +     GI+  
Sbjct: 2    FAPLQVKSAYSLLQSPLKISDYVEAASKMGYEALCLTDVDVLYGAFEFFEACRKYGIKKP 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD--QGKQS 128
            +         D  +             S++LL   A GY+ L+++ S     +      +
Sbjct: 62   VIGIELNMQGDGEE----------EPISLLLLAKNAAGYRNLVKISSNKLSENSLDPHDN 111

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             + C     +   +G+ ++    S  +  +               FKKL  +   + L +
Sbjct: 112  PQTCDDI--KDCLDGVAVIVSPESIKVASSP------------KFFKKLQSNGAKLYLGK 157

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               + R       ++A T ++P +A +   +L  +DY    VL A+     ++   R   
Sbjct: 158  GPQFSRELLLDAYRIAETLKIPQIALSKVEYLKPDDYFGQVVLQAIDADERINFDQRM-- 215

Query: 249  TPDHYLKNRSE---------MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +   YLK+ SE         M + F         T ++     F L      LP +  ++
Sbjct: 216  SGSEYLKSPSEYQIDYKNAGMETEF-------GQTEKLLSEIDFWLTPSEISLPHYKFQK 268

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                +    + L+     G++    +           Y++RLD EL VI  M F  YFLI
Sbjct: 269  GV-AKVSAHDYLKRLCADGIKRCFRENPDK----IDIYQKRLDHELKVIHEMGFEDYFLI 323

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V+   Q+A+   I VGPGRGS AGS+ +Y L ITD+DP++++LLFERFLN +R  MPD D
Sbjct: 324  VSGITQYARSVGIIVGPGRGSAAGSLVSYVLRITDVDPIKYNLLFERFLNEERHEMPDID 383

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +D   ++RD +I+YV + YG   +AQIITF +  AK ALRD  R   +  ++ D   K I
Sbjct: 384  LDIPDNKRDRIIKYVYDTYGSRHMAQIITFDTFGAKQALRDGCRIFGLTQAETDAWSKAI 443

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P      +  +A  +  R R         +RL E +QKLEGL RH STHAAGIV+ D+ L
Sbjct: 444  PFGDKMTLE-RARRESQRIRNLIADSKRNERLFETAQKLEGLPRHFSTHAAGIVLSDQNL 502

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DL 598
             ++VP+         +TQF+ K +EKAGL+K D LGLK L +L  + D + Q      DL
Sbjct: 503  DEVVPVQIG-NDGYLMTQFSKKPVEKAGLLKIDLLGLKNLRILNTAKDLVNQNKASKLDL 561

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  T  L     T GIFQ +S G+RQA+  ++P+  ED++AL +LYRPGPI NI
Sbjct: 562  EQIPLDDKATLELFYNAKTEGIFQFDSYGIRQAMLKIRPENFEDVVALNALYRPGPIRNI 621

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  R++G++ +     +++P+L  T G+I+YQEQ MQ++  + G++L EAD+LR+A+ 
Sbjct: 622  DEFTARRHGRKTVSYPAKVLEPILNSTYGIIVYQEQAMQVSSKMGGFTLGEADILRQAIS 681

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  E +++ + +F++GA K G SK  A+ +++ + +F +YGFN+SHA AY+ +++Q A+
Sbjct: 682  KKEHETIERMRVKFVAGAQKKGFSKEDALRVYDYIERFGEYGFNRSHAVAYSKMAFQMAY 741

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K HYP EF  A ++  + NVEK + F   A++  I+I+ P +N    DF++ D  I + 
Sbjct: 742  LKAHYPAEFYCALLSTVIGNVEKTQSFLAAAKKRKIKILAPDINKSSYDFRISDGGIMFG 801

Query: 839  LAAIKGVGTTTARHIMEASADK---PFDSLEDFCSRV-------------------DSKK 876
              ++KG+     R I+         PF SL+DF +R+                      K
Sbjct: 802  FLSVKGIRFDFIRQILAERHAGGYRPFKSLDDFMNRMVERALVDKHDHDGDAKKREKIAK 861

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
              R ++E+L++ GA D     R QLL  LD + KY Q          E++F   K     
Sbjct: 862  SYRPIVETLIYVGAFDSLEADRSQLLNRLDVLVKYDQLSM--SVPLLESLFVPSKKNVR- 918

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            K+TL+         R E E+  LG Y S HPLD Y    + +G       V   +     
Sbjct: 919  KLTLD--------ERLEKEKERLGVYLSAHPLDKYSAFAQGIGASSLASLVPDQQ----- 965

Query: 997  LAAMVVSK----QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              A+V+ +    ++ KT+KG  + +V+  +   E EA FFP
Sbjct: 966  --AIVLVRIKEIKKIKTKKGDEMAFVSCIDQTGEMEATFFP 1004


>gi|218283532|ref|ZP_03489522.1| hypothetical protein EUBIFOR_02112 [Eubacterium biforme DSM 3989]
 gi|218215800|gb|EEC89338.1| hypothetical protein EUBIFOR_02112 [Eubacterium biforme DSM 3989]
          Length = 989

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/1003 (33%), Positives = 521/1003 (51%), Gaps = 53/1003 (5%)

Query: 32   ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91
            ++          + +TD N ++  +EF Q      +  IIG ++                
Sbjct: 1    MILHQKQLGYNHVCLTDHNVMYGTMEFYQLCKKHNVHAIIGLEV-------------DSI 47

Query: 92   PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151
                    +LL     G Q L +L S +           +    + +   + +++ +   
Sbjct: 48   YNEEPFHFILLAKNDMGLQNLYKLSSII--------KENVSFDEVIKYAKDCVVLTSSDG 99

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPL 211
                         +     +   K  F D  YV++  +    +  +++++      +   
Sbjct: 100  KDTFSAYIEHQDLEKLSAFVELCKNSFSD-FYVSISMNDSGKKRVDNKIL---KQLDCKC 155

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            VA +  L+   ED ++   L A+A  T +  +    V    YL++  EM +++ +    L
Sbjct: 156  VALSRILYEKSEDVKSLQALRAIAKQTSIENQGLD-VQFQRYLRSPQEMEALYDECD--L 212

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
              T +IAR C+  +      LP F  K    +  +  + L      GLE RL     A  
Sbjct: 213  LATEQIARMCNVQMAFQKSKLPVFENK----LHIDSSDYLVKLCKKGLEKRLNGNLDA-- 266

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
                 Y  RL++EL+VI  M F+ YFLIV DFI++A+  +I VGPGRGS AGS+ AY L 
Sbjct: 267  ----VYMNRLEYELSVIINMGFTDYFLIVWDFIRYARSKDIFVGPGRGSAAGSLVAYCLG 322

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP++ +LLFERFLNP R+SMPD D DF  DRRDEVIRYV+  YG + V+ I+TF +
Sbjct: 323  ITHIDPIQNNLLFERFLNPSRISMPDIDTDFPDDRRDEVIRYVRKLYGQDHVSHIVTFNT 382

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            LQA+ A+RDVGR + +P   VD L K++ N P   + +QA  D++ FR+   +D  +  L
Sbjct: 383  LQARQAIRDVGRVMNIPARIVDELSKMLKNTPKITL-MQAYNDNALFRKRIQSDQKLIEL 441

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
             ++   +EGL RH S HAAGIV+ D+P+  + P+   V  D+  TQF  +++E  GLIK 
Sbjct: 442  FQMCVSIEGLPRHTSLHAAGIVLSDQPIVNVCPLV-SVDGDIQATQFTAEYLEDLGLIKM 500

Query: 572  DFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            DFLG++ LT + + +  L  Q+ + +D+  I   D +TY LL+   TLG+FQLESSG+  
Sbjct: 501  DFLGIRNLTTIHEIVTNLKEQKHISLDMMKINLKDAKTYQLLSLGNTLGVFQLESSGITT 560

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
             L+ +QP+ IEDI  +++LYRPG + +I  Y  RK    K+V  HPL++P+LKET G++I
Sbjct: 561  LLQKIQPNKIEDISVVLALYRPGAMQHIDTYIERKKDPSKVVYPHPLLEPILKETYGIMI 620

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVMQ AQ++ G+SL++AD LR+AM KK  + M   KE+FI GA KN I  +++  IF
Sbjct: 621  YQEQVMQTAQVIGGFSLAQADTLRKAMSKKKLDVMQNLKEQFILGARKNRIKDSVSNEIF 680

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
             ++ +FA YGFNKSH+ AY++++YQ A++K +YP+ F  + +   + +  K  ++  + +
Sbjct: 681  SIMEQFAGYGFNKSHSYAYSLVAYQMAYLKANYPLYFYQSLLNSVIGSGIKTSQYIYECK 740

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
            + NI +    +N     + +  N I   L  +KGVG T    I+E     P+  L DF +
Sbjct: 741  RRNIVVNGCDINHSKAFYTIEQNSIRMPLQVLKGVGKTIYPTIIEHV---PYTDLFDFLA 797

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +    K+N   +  L+  GALDCFGY+R  L ++L  +  Y   V     N     F+  
Sbjct: 798  KASMYKINESTIRILIDGGALDCFGYNRATLNENLRKLMDYVNIVRIEDPNDLRFDFSIV 857

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
                  +I       EN   + + EQ V GFY S HP+   + + +           A  
Sbjct: 858  SRPGIQRIK------ENPIQKAQKEQYVYGFYVSEHPVQSLR-MHKYPNCIPL--LNAVN 908

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            R   + +   V S +  KT+KG  + +++  + A + +A   P
Sbjct: 909  RDGYMNILVRVASFRTHKTKKGDWMCFMSVEDEAGKMDAVIMP 951


>gi|218440338|ref|YP_002378667.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 7424]
 gi|218173066|gb|ACK71799.1| DNA polymerase III, alpha subunit [Cyanothece sp. PCC 7424]
          Length = 876

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/812 (38%), Positives = 465/812 (57%), Gaps = 62/812 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+      PAIA+TD   ++ A+E  +   +  I+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAIELIKICRSKNIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
           IIG ++ +   D    + + +         V+L    +GY+ L++L +   L     +  
Sbjct: 62  IIGNEMYVINADLDDRSKKHRK-----YHQVVLAKNNQGYKNLVKLTTISSLHGMHGKGI 116

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L+E   EGLI+ +    G + +         A+K    +K LFGD  Y+ 
Sbjct: 117 FARPCINKELLKEYH-EGLIVTSACLGGEVPQNILAGKLDQAKKVAKWYKDLFGDDYYLE 175

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR     +V++A   ++ +VATN+S F+S  D EAHD L+ +    +++++ 
Sbjct: 176 IQDHGSPEDRIVNLGIVKIAKDLKIKIVATNDSHFISCYDVEAHDALLCIQTGKLITEEK 235

Query: 245 RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRC-SFILQVHAPILPRFIE 297
           R R +   YLK+  EM  +F D      + EA+ NT+E+A +       +  P +P +  
Sbjct: 236 RMRYSGTEYLKSADEMRQLFRDHLEDEMIEEAINNTLEVADKVVQDYKILGEPRIPDYPV 295

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                     ++ +  K   GL  RL   ++        Y+QRL++EL +I +M FS YF
Sbjct: 296 PPG----HTADSYVEEKTWEGLLERLKCRSV--IEIPPAYKQRLEYELKMIQQMGFSTYF 349

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           L+V D+I++A+ + IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD
Sbjct: 350 LVVWDYIKYARDHEIPVGPGRGSAAGSLVAYALKITNIDPVHHGLLFERFLNPERKSMPD 409

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D DFC +RRDE+I+YV  KYG   VAQIITF  L +KA L+DV R L +PYS+ D++ K
Sbjct: 410 IDTDFCIERRDEMIKYVTEKYGERNVAQIITFNRLTSKAVLKDVARVLDIPYSESDKMAK 469

Query: 478 LIPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
           LIP     P  L+ +      +  F++   +DP V R ++++ ++EG  +    HAAG+V
Sbjct: 470 LIPVSRGKPTKLKVMISDETPEPEFKQKYDSDPQVKRWVDMAIRIEGTNKTFGVHAAGVV 529

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--- 590
           I  +PL ++VP+ ++      +TQ+ M+ +E  GL+K DFLGLK LT +QK+ + +    
Sbjct: 530 ISSQPLDEIVPLQKN-NDGAVITQYFMEDLESLGLLKMDFLGLKNLTTIQKTAELVKVNK 588

Query: 591 -----------------QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
                            +   K +L  +P D  +T+ LL      GIFQLESSGMRQ + 
Sbjct: 589 NEIIDVDELPLHERKALEIIAKGELKKLPDDVEKTHKLLERGDLEGIFQLESSGMRQIVR 648

Query: 634 GMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            ++P  IEDI ++++LYRPGP+D   I  + +RK+GKE I   H L++P+LKET  V++Y
Sbjct: 649 DLKPSGIEDISSILALYRPGPLDAGLIPKFIDRKHGKEPIKYEHQLLEPILKETYAVLVY 708

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QEQ+M++AQ L+GYSL EAD+LRRAMGKK   EM K KE FI G++KNG+S+ IA N+F+
Sbjct: 709 QEQIMKMAQDLAGYSLGEADLLRRAMGKKKISEMKKHKEIFIDGSTKNGVSQEIAENLFD 768

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            + KFA+Y            +SY+T  M   Y
Sbjct: 769 QMVKFAEYC-----------LSYETQIMTVEY 789


>gi|56751907|ref|YP_172608.1| DNA polymerase III subunit alpha [Synechococcus elongatus PCC 6301]
 gi|56686866|dbj|BAD80088.1| DNA polymerase III alpha subunit [Synechococcus elongatus PCC 6301]
          Length = 870

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/786 (38%), Positives = 450/786 (57%), Gaps = 35/786 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-IQ 68
           SFV L +HS YSLL+GA  L +++ +      PAIA+TD   ++ A+E  +     G I+
Sbjct: 2   SFVGLHMHSDYSLLDGASQLPDLVARAKELGMPAIALTDHGVMYGAIELLKVCKNQGNIR 61

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ- 127
           PIIG ++ +          + +   P     ++L    +GYQ L++L S  +L     + 
Sbjct: 62  PIIGNEMYVINSPIDDPNPRVRKYHP-----IVLAKNKKGYQNLVKLTSISHLQGFKGRG 116

Query: 128 ---SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 I    L++   EGLI+ +    G I +A   +   VA +    +++ FG+  Y+
Sbjct: 117 IFARPCIDKEHLEKY-REGLIVTSACLGGEIPQAILQSRPDVARRVAAWYQERFGEDFYL 175

Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +Q H    DR    ++V++A    + LVATN+S F+S  D EAHD L+ +    +V + 
Sbjct: 176 EIQDHGSPEDRIVNVEIVRIAQELGIELVATNDSHFISCFDVEAHDALLCIQTGKLVVED 235

Query: 244 DRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIE 297
            R R +   YLK+  EM  +F D      + +A+ NT+ IA +      +  P +P F  
Sbjct: 236 KRLRYSGTEYLKSAEEMHQLFRDHLPDDVIAKAIANTLVIASKIEDYNILGEPKIPTFPV 295

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            +       EE  +   A  GL  RL           + YR RL++E+ ++  M F+ YF
Sbjct: 296 PDG----YNEETYMAEVARQGLAERLNCDRYEDCE--EAYRDRLEYEIKMMHEMGFASYF 349

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           L+V D+I++A+ NNIPVGPGRGS AGS+ AY + IT+IDP+   LLFERFLNP+R SMPD
Sbjct: 350 LVVWDYIKFARDNNIPVGPGRGSAAGSLVAYCMGITNIDPVHHGLLFERFLNPERKSMPD 409

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D DFC D+RD+VI YV  KYG +RVAQIITF  + +KA L+DV R L +PY + DR+ K
Sbjct: 410 IDTDFCIDQRDKVIDYVTKKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADRMAK 469

Query: 478 LIPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
           LIP     P  L+ +  D      F+E    D  V   ++++ ++EG  +    HAAG+V
Sbjct: 470 LIPVARGKPAKLKVMISDQTPAPEFKEKYEKDARVKHWVDMALRIEGTNKTFGVHAAGVV 529

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
           I   PL ++VP+ R+      +TQ+ M+ IE  GL+K DFLGL+ LT++QK++D + +  
Sbjct: 530 ISAVPLDEIVPLQRN-NDGQVITQYYMEDIEACGLLKMDFLGLRNLTMIQKAIDLVQETS 588

Query: 594 -VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
              +D   +P DD +TY LL      G+FQLESSGMRQ +  ++P  +EDI ++++LYRP
Sbjct: 589 GQAIDPDRLPMDDPKTYQLLAKGDLEGVFQLESSGMRQIVRDLKPSNLEDISSILALYRP 648

Query: 653 GPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           GP+D   I  + NRK+G+E I     ++ P+L ET G+++YQEQ+M+IAQ + GY+L EA
Sbjct: 649 GPLDAGLIPKFINRKHGREAIDYADQMLQPILNETYGIMVYQEQIMKIAQDMGGYTLGEA 708

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF---NKSHAA 767
           D+LRRAMGKK   EM K +  F+ GA KNG+++ +A  +F+ +  FA+Y      +    
Sbjct: 709 DLLRRAMGKKKMSEMVKHQSTFVEGAKKNGVAEKVAAELFDQMVLFAEYCLAADTEVLTV 768

Query: 768 AYAVIS 773
            Y  I+
Sbjct: 769 EYGPIA 774


>gi|121594327|ref|YP_986223.1| DNA polymerase III subunit alpha [Acidovorax sp. JS42]
 gi|120606407|gb|ABM42147.1| DNA polymerase III, alpha subunit [Acidovorax sp. JS42]
          Length = 1064

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/1060 (25%), Positives = 447/1060 (42%), Gaps = 97/1060 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S++S   GA     ++ +       A+A+TD  ++   +     A A G+ 
Sbjct: 4    PAYAELHALSNFSFQRGASHPQELVQRAHKLGYSALALTDECSVAGVVRAHGAAQALGLP 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQ 127
             I+G +                        IV L    +G+  L E ++       +G  
Sbjct: 64   LIVGSEFCW-----------------GDVRIVALARDVQGWGDLCEFITAARQRAGKGGY 106

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE--KRLLTFKKLFGDRLYVN 185
             V     W    G E L+ L         R  F ++S +      L + + LFG   ++ 
Sbjct: 107  RVDAQSPWALLQGCEVLLAL--------RREAFVDASDLVAVSACLESVRGLFGSNCWLA 158

Query: 186  LQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            ++ H   D       + Q      LPLVA  +    S       DVL AV     V+   
Sbjct: 159  VELHTAPDDGLWLRTLTQAGARLGLPLVAAGDVHMHSRAAKPLQDVLTAVRLGRSVAACG 218

Query: 245  RP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               +   +  L+ RS +  ++   P  L  T+++A RC+F L       P    +     
Sbjct: 219  FALQPHAEKRLRPRSRLAGLYP--PALLAATLQVAARCTFSLNEIKYRYPLETVQPGMTA 276

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +     L      G  VR   G        +    +++ EL +IA   +  YFL V D 
Sbjct: 277  SQT----LACLTWEGARVRYPDGV------PEAVAAQVEKELALIAECGYEMYFLTVHDI 326

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+   I +  GRGS A S   Y L IT +DP +  LLFERF++ +R   PD D+DF 
Sbjct: 327  VRYARSQGI-LCQGRGSAANSAVCYCLGITAVDPQKTRLLFERFISRERSEPPDIDVDFE 385

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR+ VI+Y+ +KYG ER A      S + ++ALRDVG+AL +  + VD   K      
Sbjct: 386  HDRRETVIQYIYDKYGRERSAITAVVISYRTRSALRDVGKALGVAPALVDAFAKEHHWFD 445

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                +   +A   R  E  L   +    L+++++L G  RH S H  G V+ +  L++LV
Sbjct: 446  DVLATEHLLALAERLGE-PLGAHTAALWLQLARQLRGFPRHLSQHVGGFVLTEGKLTRLV 504

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIP 602
            P+         + Q++   ++  GL+K D L L  L+ L++ L+   A RG   DL+ IP
Sbjct: 505  PVEPAAMDGRSIIQWDKDDLDAMGLLKVDVLALGMLSALRRCLEMRAALRGESWDLADIP 564

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY- 661
             +D  TY ++    T+G+FQ+ES      L  +QP    D++  V++ RPGPI   +V+ 
Sbjct: 565  PEDPATYDMVCRADTVGVFQIESRAQMSMLPRLQPREFYDLVVQVAIVRPGPIQGGMVHP 624

Query: 662  ---------------NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
                             ++     I      +   L+ T GV I+QEQVMQIA   +G+S
Sbjct: 625  YLQARERRRQWQRRQRTKREEPFPIEYP--RLGNALRRTLGVPIFQEQVMQIAIDGAGFS 682

Query: 707  LSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
              +AD LRR+M   + K E+ + ++ F  G   NG     A  +F+ +  F +YGF +SH
Sbjct: 683  AGQADELRRSMAAWRRKGEVHRFEKPFKDGLLANGYPPEFADRLFQQILGFGEYGFPESH 742

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A ++A+++Y ++W+K H P  FLAA +  +        +  QDAR+  ++++P  V T  
Sbjct: 743  AYSFALLAYASSWLKRHEPACFLAALLNAQPLGFYTPAQLVQDARRHGVRVLPIDVATSD 802

Query: 826  VDFKVG------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
            VD  +                +   L  + G+G   A  +++A    PF S ED   R  
Sbjct: 803  VDCTLEEPLAPVAGVSLAQPAVRLGLRLVAGLGAAAAERLVQARGSGPFASTEDLALRAR 862

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
              + + + L +     A    G+ R Q+  +   ++                    +   
Sbjct: 863  LDRQDLQALAAADALRA--LAGHRRQQMWDAAAQLRA--------------PPLLQDAPV 906

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
                + L         +    +    G     HPL + +  L++  +   ++  +   G 
Sbjct: 907  HEAALQLPAAPEGEDIL---WDYAATGLTLRRHPLALLREKLQRWRLATAQQLQSAPHGR 963

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +R   +V  +Q+  +  G+   +VT  +         +P
Sbjct: 964  RVRACGIVTVRQRPGSANGTM--FVTLEDETGSVNVIVWP 1001


>gi|126738654|ref|ZP_01754359.1| DNA polymerase III, alpha subunit, putative [Roseobacter sp.
            SK209-2-6]
 gi|126720453|gb|EBA17159.1| DNA polymerase III, alpha subunit, putative [Roseobacter sp.
            SK209-2-6]
          Length = 1152

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/1080 (24%), Positives = 444/1080 (41%), Gaps = 103/1080 (9%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC---- 63
             P +  L V S+++ L GA     ++ +       AIAITD N+L  ++           
Sbjct: 31   PPGYAELAVTSNFTFLTGASHPEELVARAVELGLAAIAITDRNSLAGSVRAFAALKTLRQ 90

Query: 64   --------------------AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFP--------- 94
                                A  I+           +   K   +     P         
Sbjct: 91   QREEAAEEQAKEAQAETETAALRIRSQYRTDSSSRQESGPKEALETSKLAPLPQLITGCR 150

Query: 95   -----TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL-SWLQEIGTEGLIMLT 148
                 +    + L      Y RL  L+S   L  + K    + L   L       LI L 
Sbjct: 151  LVLRDSPVHWLALPQDRAAYHRLSRLLSLGKLRAE-KGQCHLDLQDMLAGCSGMTLIAL- 208

Query: 149  GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTH 207
                                + L    + +  ++++     + G D+   +Q    A   
Sbjct: 209  ---------PQVPLQEAQVLQHLQAVVRQYPGQVFLGAAPRYDGSDQAYFAQCHHFARRA 259

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSD 266
              P+VA  + L       +  DVL  +     +     R     +  LK  ++M  +F  
Sbjct: 260  AAPMVAVGDVLMHRGSRRQLGDVLTCMREKLTIDAIGTRALPNGERRLKAPADMARLFRS 319

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
             P AL  ++EIA RCSF L   +   P  I  E     +     L   A  GL  R   G
Sbjct: 320  YPAALRRSLEIAARCSFCLSQLSYEYPSEISAEEPPQVR-----LERLAWEGLARRCPDG 374

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
              A+      YR   + EL ++A + F+ YFL V D + +A+   I +  GRGS A S+ 
Sbjct: 375  IPAR------YRAMAEKELRLVADLGFAAYFLTVRDIVDYARSQEI-LCQGRGSAANSIL 427

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
             YAL ITD+ P + S++FERF++  R   PD D+DF  +RR+EVI+++  KYG  R    
Sbjct: 428  CYALFITDVSPEQISMVFERFVSKHRGEPPDIDVDFEHERREEVIQHIYEKYGRHRAGLC 487

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T    +++AA+R+VG+ + +       L   I          + + +        L D 
Sbjct: 488  STVIHFRSRAAIREVGKVMGLSEDVTASLSGQIWGQSNRGADPERMKELG----LDLEDR 543

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
             + + + +  ++ G  RH S H  G VI    L +L P+      D  + +++   I+  
Sbjct: 544  RLAQTIRLIGEIIGFPRHLSQHVGGFVITRGRLDELCPIENAAMEDRTIIEWDKDDIDTL 603

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRG--VKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            G++K D L L  LT ++KS D L Q     +  ++ +P DDH TY +L     +G+FQ+E
Sbjct: 604  GILKVDVLSLGMLTCIRKSFDLLEQHEGGERWSIATVPQDDHPTYDMLCLADAVGVFQVE 663

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPML 682
            S      L  M+P    D++  V++ RPGPI   +   Y  R+ G+EK+      ++ ++
Sbjct: 664  SRAQMNFLPRMRPRRFYDLVIEVAIVRPGPIQGGMVQPYIKRRQGREKVEYPSKELEEVM 723

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGI 741
             +T GV ++QEQ MQIA + +G++   AD LRR++   +    +   ++RFI+G  +   
Sbjct: 724  GKTLGVPLFQEQAMQIAVVAAGFTPEAADQLRRSLATFRRMGTISSFRDRFINGMLERNY 783

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
                A   F  +  FADYGF +SHAAA+A+++Y +AW+K H+P  F  A +  +      
Sbjct: 784  DAEFAARCFAQIEGFADYGFPESHAAAFAMLTYISAWLKCHHPAVFACALLNSQPMGFYA 843

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEA 856
              +  +DAR   I++ P  VN+   D  +     G   +      IKG  +  A  I+ A
Sbjct: 844  PAQIVRDARDHGIEVRPVCVNSSTWDNSLERRADGALALRLGFRQIKGFRSEDAEWIIAA 903

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
              +  +   +    R   +      LE L  A A+   G  R Q L  +  I+       
Sbjct: 904  RGNG-YRDPDALWLRAGLR---PDALERLAEADAMADMGLGRRQALWQVKAIRGQV---- 955

Query: 917  KNRTNKHENIFAHE---KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
                     +F+     +G     + L   ++    V    +   L      HP+++ +P
Sbjct: 956  ------PLPLFSDPLEGEGLREPDVVLPPMNLGEEVV---EDYVALRLTLKAHPMELLRP 1006

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++  +    +++      G    +  +V+++Q+  T  G  + ++T  +         +P
Sbjct: 1007 LIPDL--TPHDQLARVPLGQTA-VCGLVITRQRPGTASG--VVFLTLEDETGVSNVVVWP 1061


>gi|307154137|ref|YP_003889521.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 7822]
 gi|306984365|gb|ADN16246.1| DNA polymerase III, alpha subunit [Cyanothece sp. PCC 7822]
          Length = 875

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/812 (38%), Positives = 466/812 (57%), Gaps = 62/812 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+      PAIA+TD   ++ A+E  +      I+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAIELIKICRGKNIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
           IIG ++ I   D    T + +         V+L    +GY+ L++L +   L     +  
Sbjct: 62  IIGNEMYIINADLDDRTKKQRK-----YHQVVLAKNNQGYKNLVKLTTISSLHGMHGKGI 116

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L++   EGLI+ +    G + +A    + + A+K    ++ LFGD  Y+ 
Sbjct: 117 FARPCINKKLLEQYH-EGLIVTSACLGGEVPQAILAGNLEEAKKVAKWYQDLFGDDYYLE 175

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR     +V++A    + +VATN+S F+S  D EAHD L+ +    ++S++ 
Sbjct: 176 IQDHGSKEDRIVNLGIVKIAKELGIKIVATNDSHFISCYDVEAHDALLCIQTGQLISEEK 235

Query: 245 RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRC-SFILQVHAPILPRFIE 297
           R R +   YLK+  EM  +F D      + EA++NT+E+A +       +  P +P +  
Sbjct: 236 RMRYSGTEYLKSAEEMRQLFRDHLEDEIIEEAIKNTLEVAEKVVQDYKILGEPRIPDYPV 295

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                     +  +  KA  GL  RL   +I        Y++RL++EL +I +M FS YF
Sbjct: 296 PAG----HTPDTYVEEKAWQGLLERLKCHSIT--ELNPLYKKRLEYELKMIQQMGFSTYF 349

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           L+V D+I++A+ N IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP+R SMPD
Sbjct: 350 LVVWDYIKYARDNGIPVGPGRGSAAGSLVAYSLKITNIDPVHHGLLFERFLNPERKSMPD 409

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D DFC +RRD++I+YV  KYG   VAQIITF  L +KA L+DV R L +PY++ D++ K
Sbjct: 410 IDTDFCIERRDDMIKYVTKKYGEGNVAQIITFNRLTSKAVLKDVARVLDIPYAESDKMAK 469

Query: 478 LIPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
           LIP     P  L+ +      +  F+     DP+V R ++++ ++EG  +    HAAG+V
Sbjct: 470 LIPVSRGKPTKLKVMISDETPEPEFKAKYDNDPNVKRWVDMAIRIEGTNKTFGVHAAGVV 529

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
           I  +PL ++VP+ ++      +TQ+ M+ +E  GL+K DFLGLK LT LQK+ + + Q +
Sbjct: 530 ISSQPLDEIVPLQKN-NDGAVITQYYMEDLESLGLLKMDFLGLKNLTTLQKTAELIKQNK 588

Query: 593 GVKVDLSLIPFDDHE-------------------TYHLLTTKGTLGIFQLESSGMRQALE 633
              +D+  +P D+ +                   T+ LL      GIFQLESSGMRQ + 
Sbjct: 589 QEDIDVETLPLDERKALEIIAKGVYKKLPKDIEATHKLLERGDLEGIFQLESSGMRQIVR 648

Query: 634 GMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            ++P  IEDI ++++LYRPGP+D   I  + +RK+G+  I   HPL++P+LKET  V++Y
Sbjct: 649 DLKPSGIEDISSILALYRPGPLDAGLIPKFIDRKHGRVPIKYDHPLLEPILKETYAVLVY 708

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QEQ+M++AQ L+GYSL EAD+LRRAMGKK   EM K KE FI G++KNG+ + IA N+F+
Sbjct: 709 QEQIMKMAQDLAGYSLGEADLLRRAMGKKKISEMQKHKEIFIDGSTKNGVPQEIAENLFD 768

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            + KFA+Y            +SY T  +   Y
Sbjct: 769 QMVKFAEYC-----------LSYDTEILTVEY 789


>gi|163853972|ref|YP_001642015.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1]
 gi|163665577|gb|ABY32944.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1]
          Length = 1071

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/1034 (26%), Positives = 448/1034 (43%), Gaps = 70/1034 (6%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             LQV + +S L GA S   +    +    PA+ +TD  +L   +   Q A   G++ ++G
Sbjct: 9    ELQVTTHFSFLRGASSPEELFSAASLLGIPALGVTDHGSLAGMVRAHQAAKVTGVRLVVG 68

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            C+LD+D                    +++  +    Y RL  L+S       GK   R+ 
Sbjct: 69   CRLDLD---------------DLSSPLLVYPTDRAAYGRLCRLLSLGKARG-GKGRCRLT 112

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RG 191
               L+E       +L     GP                L  FK LFG R    L R  R 
Sbjct: 113  WRDLEEWQEGFFAILLAEHPGP-----------ALPNDLARFKGLFGARASCALTRRFRP 161

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250
             D  R   +   A    +P VAT + L+         DV+  +     + +    +    
Sbjct: 162  DDADRLDALAAAARAARVPTVATGDILYHVAGRRRLQDVVTCIRLGLTIDRAGFAKERHA 221

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            D +LK  +E   +F+  PEAL    EIA  C F L   A   P     E  +     +  
Sbjct: 222  DRFLKPPAETARLFARFPEALARAGEIAAACRFSLDDLAYTYPT----ESREDGLSPQER 277

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L     AG   R   G        +   ++L  EL++I R+ ++ YFL V   + +A + 
Sbjct: 278  LDVLTWAGAARRYPAGV------PEAVTRQLHHELDLIGRLAYAPYFLTVESIVAFANRE 331

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I +  GRGS A S   + L IT IDP R +LLFERF++  R   PD D+DF  +RR+EV
Sbjct: 332  KI-LCQGRGSAANSAVCFCLGITSIDPTRQNLLFERFVSEARREPPDIDVDFEHERREEV 390

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+++   YG  R A        +++ ALR+VG+ + +P      L ++  +  +  V   
Sbjct: 391  IQWIFQTYGRHRSALTAIVSRFRSRGALREVGKVMGLPEDVTGALNRMTWSWSSEGVG-- 448

Query: 491  AIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                +   RE  L   D  +   L I+++L G  RH S H  G V+    L +LVP+   
Sbjct: 449  ----ERELRELNLNPDDRRLRLTLAIARELIGTPRHLSQHPGGFVLTLDRLDELVPVEPA 504

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
              +D  V +++   I+    +K D LGL  L  L+++ D LA+ +    DL+ IP  D  
Sbjct: 505  AMADRQVIEWDKDDIDALKFMKVDVLGLGMLGCLRRAFDLLAEVKNDPHDLASIPSKDEP 564

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRK 665
            T+ ++    TLG+FQ+ES      L  M+P    D++  V++ RPGPI  D +  Y  R+
Sbjct: 565  TFAMIRRADTLGVFQIESRAQMAMLPRMKPKEFYDLVIEVAIVRPGPIQGDMVHPYLRRR 624

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEE 724
             G E++    P +  +L++T GV ++QEQ MQ+A + +G+S +EAD LRR+M   K    
Sbjct: 625  EGLEEVTYPTPELKAVLEKTLGVPLFQEQAMQVAMVGAGFSATEADELRRSMATFKFTGG 684

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + + + R + G   NG ++  A   F+ L  F  YGF +SHAA++A+++Y ++WMK H+P
Sbjct: 685  VHRFQNRLVEGMVANGYARDFAERTFKQLEGFGSYGFPESHAASFALLAYASSWMKCHHP 744

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-------NRIYY 837
              F AA +  +        +  +DAR   ++I P  VN    D  +           +  
Sbjct: 745  DVFCAALLNAQPMGFYAPAQIVRDARAHGVEIRPLDVNFSQWDCTLETLGAGRKLFAVRL 804

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L    G+       ++ A   +PF SL +   R      +   L  LV A A    G +
Sbjct: 805  GLRLASGLAERDGHRLVAARGGRPFASLPELADRAGVPATS---LTCLVRADAFRSLGLN 861

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R +   ++  ++     +    +     I A    T    ++L   S     V    +  
Sbjct: 862  RREAAWAVKALRPDPLPLFAALSA---PIQAEPAQTAEPAVSLPAMSAGGEVV---ADYC 915

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G     HPL   +  L  +G +          G  I +A +V+ +Q+  + KG+   +
Sbjct: 916  ANGLSLRAHPLAFLRETLTTLGARPCAALERVGNGGAIVVAGIVLMRQRPGSAKGTM--F 973

Query: 1018 VTFSEPAKEYEANF 1031
            +T  +         
Sbjct: 974  MTLEDETGIANLIV 987


>gi|256394376|ref|YP_003115940.1| DNA polymerase III subunit alpha [Catenulispora acidiphila DSM 44928]
 gi|256360602|gb|ACU74099.1| DNA polymerase III, alpha subunit [Catenulispora acidiphila DSM
            44928]
          Length = 1127

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1074 (27%), Positives = 482/1074 (44%), Gaps = 102/1074 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L  HS +S L+GA S   ++ + A      +A+TD +    A+++ Q A  A + 
Sbjct: 52   PPYAELHAHSHFSFLDGASSPAELVAEAARLGLHGLAVTDHDGFAGAMQYKQAAEDAELA 111

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             + G +L +++        +     P    +++L   AEGY+RL   + +  L  Q K  
Sbjct: 112  TVFGAELSLEL-----TAARTGVTDPAGSHLLVLARRAEGYRRLSAAIGKAQLAGQEKGK 166

Query: 129  VRICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNS-----SQVAEKRLLTFKKLFGDR- 181
                L  L E   +G   +LTG   G + +A   +       + A+  L     LFGDR 
Sbjct: 167  PVYVLDDLAEAAADGDWTILTGCRKGTVRQALERHGLTEAGFEAADAELRKLMDLFGDRN 226

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTV 239
            + + L  H    D  R   + +LA  H LP VAT N  +    DY  H  + A+    T+
Sbjct: 227  VLIELTDHDQPLDDARNRLLARLAARHGLPTVATGNVHYARPADYRLHTAMAALRARRTL 286

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                      P  YL++ +EM++ F   +   A+  + E+A   +F  +   P LP +  
Sbjct: 287  AEMDGWLPGAPTAYLRSGAEMLARFPVHEFGRAVVRSAELAADHAFDFKTINPQLPDYPV 346

Query: 298  KECDDIQKEEENELRNKAVAGLEVRL-AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
             E       E + LR+    G   R  ++    K YH      ++ +EL+VI ++KF GY
Sbjct: 347  PEG----HTEASWLRHLTYLGAAQRYGSESENPKAYH------QIAYELDVIEQLKFPGY 396

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV D  ++ +   I +  GRGS A S   +AL IT +D +R  L+FERFL+P R   P
Sbjct: 397  FLIVYDIAEFCRAQGI-LAQGRGSAANSAVCFALGITSVDSVRHGLVFERFLSPVRDGPP 455

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+D    RR++VI++V  KYG +R A +    + +A+ ALRD  R L      VD   
Sbjct: 456  DIDVDIEAGRREDVIQHVYAKYGRDRAAMVCNVITYRARLALRDSARVLGYSPGTVDAWA 515

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
              I      P   + I +               ++LE++ +L+   RH   H  G+VI D
Sbjct: 516  GTIGPHEGVPDGSEEIPE---------------QVLELAGRLQRRPRHLGIHNGGMVIVD 560

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
            RPL+Q+VP+    R    V Q++      AGL+KFD LGL  L  +  +LD +A+    +
Sbjct: 561  RPLAQVVPIEWARREGRTVLQWDKDDCAAAGLVKFDLLGLGMLGAIHDALDLIAEHHGTR 620

Query: 596  VDLSLIPFD-DHE---TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            + L  +P D D E    Y ++    T+G+FQ+ES      L  ++P C  D++  V+L R
Sbjct: 621  LGLHDLPQDGDPEADAVYAMIQDADTVGVFQIESRAQMVTLPRLKPKCFYDLVVEVALIR 680

Query: 652  PGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGPI       Y  R+NG E++   HP ++P+L+ T GV+++QEQ MQ+A   +G+S +E
Sbjct: 681  PGPIQGGAVHPYLRRRNGDEEVTYPHPTLEPVLERTLGVVLFQEQAMQMAIAAAGFSAAE 740

Query: 710  ADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD LR+AM  K+  E M + KER ++G ++ GI+     +I+  L  F+ YGF +SH+ +
Sbjct: 741  ADRLRQAMGSKRSPERMAELKERLMAGMAERGITPETGEDIYAKLHAFSGYGFPESHSVS 800

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
             A I + + ++K +YP  F AA +  +            D R+  +Q+    VN      
Sbjct: 801  MAYIVWCSCYLKRYYPAAFTAALLNNQPMGFYSPGSLVTDVRRHGVQVKRVDVNASGAKA 860

Query: 829  K------------------------------VGDNRIYYSLAAIKGVGTTTARHIMEAS- 857
                                           +    +   L++++ +G   A  ++    
Sbjct: 861  TLQSPDKPYGSGSGSGSGSGSDRTRHRHASPIAQPAVRLGLSSVRDLGDDAAEQVVAERT 920

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
            A  PF  +EDF  R     L+R  LE+L  AGA  CFG  R + L +   +         
Sbjct: 921  AGGPFTGVEDFIVRT---GLSRSTLEALATAGAFGCFGLDRREALWTAGAL--------A 969

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
              T  H  +     GT     T+ +            +    G     HP+   +  L  
Sbjct: 970  GTTAGH--LPGTAPGT-----TVPQLDPLTPVEVTLADLWATGTSPEDHPIGHLRWRLAM 1022

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             G+    E       + +R+A +V  +Q+  T  G+   +++  +         
Sbjct: 1023 RGVTPAVELRTARNRSLVRVAGLVTHRQRPPTAHGT--CFLSMEDETGLINVIC 1074


>gi|163746772|ref|ZP_02154129.1| DNA polymerase III, alpha subunit [Oceanibulbus indolifex HEL-45]
 gi|161379886|gb|EDQ04298.1| DNA polymerase III, alpha subunit [Oceanibulbus indolifex HEL-45]
          Length = 1109

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/1055 (24%), Positives = 453/1055 (42%), Gaps = 90/1055 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V   + S +S L  A    ++++        ++ I D N L   +    +A  A I+P+
Sbjct: 25   YVEFGLASCFSFLRAASDAVDLVETAHYHGYDSLGIADHNTLAGVVRLHVEAEKAHIRPL 84

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-----QG 125
            IG                 +        ++        Y RL  L+S   +       Q 
Sbjct: 85   IGA----------------RLVLLCGTELLAYPQDRAAYARLSTLLSAGKMQSVDGEWQQ 128

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            K    + L  L +   EGL ++      P +   F        K L   + +    LY  
Sbjct: 129  KGETHLTLEMLAQ-HAEGLHLIVMP---PENLDVFAAGLPRLVKALPGMRHVGASFLY-- 182

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                RG DR R +++  LA    L ++ATN+ L+ +       DV++A+    +V +   
Sbjct: 183  ----RGDDRARINRLDALARAQGLTILATNDVLYHARHRRPLQDVMVAIREGVIVPKAGY 238

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  + +LK+   M  +F+D P A+  T  +A R +F L   A   P  I  E     
Sbjct: 239  LLEANAERHLKSPEAMCRLFADWPHAIAATRRLADRITFKLTDLAYEYPHEIVPEG---- 294

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +    EL      G   R   G        +   + +  E  +I   K + YFL + D +
Sbjct: 295  RTPMEELSRLTWEGAARRYPDGV------PEAVEKTIHKEFALIESKKIARYFLTIYDIV 348

Query: 365  QWAKKNNIP--VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            ++A+++  P  +  GRGS A S   + L IT +DP   +LLFERFL+ +R   PD D+DF
Sbjct: 349  RFARQDAQPPILCQGRGSAANSAVCFCLGITSVDPAVHNLLFERFLSEERDEPPDIDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+EVI+Y+  KYG  R     T    + ++A+R+VG+A+ +      +L   I   
Sbjct: 409  EHERREEVIQYMYGKYGRHRAGLCATVIHYRPRSAIREVGKAMGLSEDVTSKLAGTIWG- 467

Query: 483  PAHPVSLQAIADDSRFREAR--LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 S +   DD R REA   L+DP +  +L +++++ G+ RH S H  G ++ +RPL+
Sbjct: 468  -----SFEGQMDDERTREAGLDLSDPYLRMVLTLAKQMIGMPRHLSQHVGGFILTERPLT 522

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599
            ++VP+      +    +++   I+   + K D L L  LT + K  D + A     ++L+
Sbjct: 523  EIVPIGNGAMPERSFIEWDKDDIDALQIFKVDILALGMLTCIAKCFDLIEAHYDRPLELA 582

Query: 600  LIPFDDHE-------TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +P +DHE       TY +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 583  TVPVEDHEDDATGRPTYDMLCRGDSLGVFQVESRAQMAMLPKLRPRVFYDLVIEVAIVRP 642

Query: 653  GPI--DNIVVYNNRKNGKEKIV-------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            GPI  D +  Y  R+ G E +V            +  +L  T GV I+QEQ M+I+   +
Sbjct: 643  GPIQGDMVHPYLRRRQGMESVVYPAPGPAYPQDELFSILSRTLGVPIFQEQAMKISIDAA 702

Query: 704  GYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
             +S +EA+ LR+AM   + +  ++K +++ +   +K G     A   F+ +  F +YGF 
Sbjct: 703  QFSPTEANELRKAMATFRSRGTIEKLQDKMVGRMTKRGYDPVFAQRCFDQIKGFGEYGFP 762

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            +SHAA++A + Y ++WMK HYP  F  A +  +        +  +DAR+  +++    VN
Sbjct: 763  ESHAASFAKLVYVSSWMKCHYPAAFACALLNSQPMGFYAPAQIVRDAREHQVEVRGVDVN 822

Query: 823  TPCVDFKVGD----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                +  +        +   L  + G+    A  IM+     P+  +ED  +R       
Sbjct: 823  LSDWNCTLEPCGEGFALRLGLRMVDGLQEKAAARIMDRRET-PYTDVEDLKTRAGLDAKA 881

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
             R L +   A  +   G  R Q L     ++                IF H +       
Sbjct: 882  IRQLAA---ADTMRSMGIDRRQALWQSQGLRDA----------PALPIFDHAEAASQGPE 928

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
                  V   + +   + + L      HP+  Y+  L   G     +      G  ++LA
Sbjct: 929  PEVTLPVMPKAEQVVADYQTLRLSLKAHPMSFYRSSLAAQGFSSARDLGRMGHGRRVKLA 988

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +V+ +Q+  + KG  + ++T  +         +P
Sbjct: 989  GLVLVRQKPGSAKG--VCFITLEDECGVANLVIWP 1021


>gi|300022283|ref|YP_003754894.1| DNA polymerase III subunit alpha [Hyphomicrobium denitrificans ATCC
            51888]
 gi|299524104|gb|ADJ22573.1| DNA polymerase III, alpha subunit [Hyphomicrobium denitrificans ATCC
            51888]
          Length = 1115

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/1072 (22%), Positives = 439/1072 (40%), Gaps = 96/1072 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---QKACAAG 66
            S+  L   +++S L GA +  + + +        I I D N L   +      Q     G
Sbjct: 3    SYAELATTTNFSFLRGASNPEDFVGRAILLGHTGIGIADRNTLAGVVRAYGALQDLRREG 62

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPF-------------------------PTVPSIVL 101
            +      +      +   + +     +                            P I+ 
Sbjct: 63   LPAPQKVREGSGPGEYAWVVDGKSREWADFSNAIKARAESFTLLAGARLVFMDGTPDIIA 122

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFF 160
                  G+ RL  L++    L + K    +C   L  +     LI+++            
Sbjct: 123  YPENRAGWARLCRLLTHGKRLAK-KGECSLCREDLLSDCADLQLIVMSPPV--------- 172

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLF 219
                   E  +    K   + +++    H +G D     ++  +A +  +PL+A N+ L+
Sbjct: 173  ---LDGFEAYVRVIAKAAPNNVWLAASLHLKGDDSRVLHRLSAIAKSSNVPLIAVNDVLY 229

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
               E     D+L  +     +     R     + +LK+  EM  +F D P A+  T ++ 
Sbjct: 230  DVPEQRPVQDILTCIREGLRIEAAGTRLEANAERHLKSSEEMERLFRDYPSAVAATQDLL 289

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
            RR SF L       P              +  L + +      R   G   K       +
Sbjct: 290  RRISFSLGELKYEYPEEPVPAG----WTPQGWLEHLSWQKAGERYPSGVPEK------VQ 339

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            Q++  EL +IA++ ++ YFL V D +++A +  I +  GRGS A S   Y L IT +DP 
Sbjct: 340  QQVTEELKLIAQLDYAPYFLTVYDIVRYANEKGI-LCQGRGSAANSAVCYVLGITAVDPE 398

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
            + +LLF RF++ +R   PD D+DF  +RR+EVI+Y+  +YG ER   + T    + ++A+
Sbjct: 399  QHNLLFARFISSERREPPDIDVDFEHERREEVIQYIYERYGRERAGLVATVIRYRPRSAI 458

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQ 516
            R+VG+ L +      R+   +       +S      ++  R+A +   +P + + +  + 
Sbjct: 459  REVGKVLGLSEDITSRIAGTVWGSWGSKLS------ETHLRQAGIDHRNPVIGQAIAFAT 512

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            ++ G  RH S H  G V+    L ++VP+      D    +++   I+  GL+K D L L
Sbjct: 513  RILGFPRHLSQHVGGFVLARGRLDEIVPIGNAAMDDRTFIEWDKDDIDVLGLMKVDVLAL 572

Query: 577  KTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
              LT ++K+ D +        +L+ +P +  + Y +L    ++G+FQ+ES      L  +
Sbjct: 573  GMLTCIRKAFDLIRTHEGESFNLATLPAEQPDIYAMLQKGDSIGVFQVESRAQINMLPRL 632

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-------LIDPMLKETQ 686
            +PD   D++  V++ RPGPI  D +  Y  R+  +E++    P        +  +L  T 
Sbjct: 633  RPDKFYDLVIQVAIVRPGPIQGDMVHPYLRRRKNREEVTFPSPKPPHDPDELKNVLSRTL 692

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTI 745
            GV ++QEQ MQ+A + + ++ +EA+ LRRAM   +    + K +   +      G  +  
Sbjct: 693  GVPLFQEQAMQLAMVAAQFTDAEANQLRRAMATFRHVGTIGKFESLLVERMVARGYDRDF 752

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A   FE +  F +YGF +SHAAA+A + Y +A++K  YP  F  A +  +        + 
Sbjct: 753  AERCFEQIKGFGEYGFPESHAAAFARLVYISAFIKCRYPAAFACALLNSQPMGFYAPAQI 812

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADK 860
             +DA +  +++ P  VN    D  +     G   +      I G+     + +++   + 
Sbjct: 813  VRDAHEHGVEVYPADVNASDWDNTLCAGAGGKTALRIGFRQIDGLSEDWCKRLIDMRRNG 872

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             +  L+    R    +   R+L     A      G  R   L S   +            
Sbjct: 873  -YADLDSLAQRTRLPQRALRLL---ADADCFRSVGIHRRDALWSARRLPDA--------- 919

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                 +FA  +     +    +    + S     + +       GHP++  + I R  GI
Sbjct: 920  -DELPLFAAAREADLGEEADAQLPAMSLSENIAVDYQTTRLSLKGHPMECLRDIFRGEGI 978

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                E  A   G+  R+A +V+ +Q+    KG+ I ++T  +      A  +
Sbjct: 979  ASCAELAAQRDGSWGRVAGVVLVRQRPG--KGNAI-FITLEDETGITNAVLW 1027


>gi|240141426|ref|YP_002965906.1| error-prone DNA polymerase, DNA polymerase III, alpha subunit
            [Methylobacterium extorquens AM1]
 gi|240011403|gb|ACS42629.1| error-prone DNA polymerase, DNA polymerase III, alpha subunit
            [Methylobacterium extorquens AM1]
          Length = 1067

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/1034 (26%), Positives = 449/1034 (43%), Gaps = 70/1034 (6%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             LQV + +S L GA S   +    +    PA+ +TD  +L   +   Q A   G++ ++G
Sbjct: 5    ELQVTTHFSFLRGASSPEELFSAASLLGIPALGVTDHGSLAGMVRAHQAAKVTGVRLVVG 64

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            C+LD+D                    +++  +    Y RL  L+S       GK   R+ 
Sbjct: 65   CRLDLD---------------DLSSPLLVYPTDRAAYGRLCRLLSLGKARG-GKGRCRLT 108

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RG 191
               L+E       +L     GP                L  FK LFG R    L R  R 
Sbjct: 109  WRDLEEWQEGFFAILLAEQPGP-----------ALPNDLARFKGLFGARASCALTRRFRP 157

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250
             D  R   +   A    +P VAT + L+         DV+  +     + +    +    
Sbjct: 158  DDADRLDALAAAARAARVPTVATGDILYHVAGRRRLQDVVTCIRLGLTIDRAGFAKERHA 217

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            D +LK  +E   +F+  PEAL    E+A  C F L   A   P     E  +     +  
Sbjct: 218  DRFLKPPAETARLFARFPEALARAGEVAAACRFSLDDLAYTYPT----ESREDGLSPQER 273

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L     AG   R   G        +   ++L  EL++I R+ ++ YFL V   + +A + 
Sbjct: 274  LDVLTWAGAARRYPAGV------PEAVTRQLHHELDLIGRLAYAPYFLTVESIVAFANRE 327

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I +  GRGS A S   + L IT IDP R +LLFERF++  R   PD D+DF  +RR+EV
Sbjct: 328  KI-LCQGRGSAANSAVCFCLGITSIDPTRQNLLFERFVSEARREPPDIDVDFEHERREEV 386

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+++   YG  R A        +++ ALR+VG+ + +P      L ++  +  +  V   
Sbjct: 387  IQWIFQTYGRHRSALTAIVSRFRSRGALREVGKVMGLPEDVTGALNRMTWSWSSEGVG-- 444

Query: 491  AIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                +   RE  L   D  +   L I+++L G  RH S H  G V+    L +LVP+   
Sbjct: 445  ----ERELRELNLNPDDRRLRLTLAIARELIGTPRHLSQHPGGFVLTLDRLDELVPVEPA 500

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
              +D  V +++   I+    +K D LGL  L  L+++ D LA+ +    DL+ IP  D  
Sbjct: 501  AMADRQVIEWDKDDIDALKFMKVDVLGLGMLGCLRRAFDLLAEVKNDPHDLASIPSKDEP 560

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRK 665
            T+ ++    TLG+FQ+ES      L  M+P    D++  V++ RPGPI  D +  Y  R+
Sbjct: 561  TFAMIRRADTLGVFQIESRAQMAMLPRMKPKEFYDLVIEVAIVRPGPIQGDMVHPYLRRR 620

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEE 724
             G E++    P +  +L++T GV ++QEQ MQ+A + +G+S +EAD LRR+M   K    
Sbjct: 621  EGLEEVTYPTPELKAVLEKTLGVPLFQEQAMQVAMVGAGFSATEADELRRSMATFKFTGG 680

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + + + R + G   NG ++  A   F+ L  F  YGF +SHAA++A+++Y ++WMK H+P
Sbjct: 681  VHRFQNRLVEGMVANGYARDFAERTFKQLEGFGSYGFPESHAASFALLAYASSWMKCHHP 740

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-------NRIYY 837
              F AA +  +        +  +DAR   +++ P  VN    D  +           +  
Sbjct: 741  DVFCAALLNAQPMGFYAPAQIVRDARAHGVEVRPLDVNFSQWDCTLESLGSGRKLFAVRL 800

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L    G+     + ++ A   +PF SL +   R     +    L  LV A A    G +
Sbjct: 801  GLRLASGLAERDGQRLVAARGGRPFASLPELADRA---GIPAASLTCLVRADAFRSLGLN 857

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R +   ++  ++     +    +     I A    T    ++L   S     V    +  
Sbjct: 858  RREAAWAVKALRPDPLPLFAALSA---PIQAEPAQTAEPAVSLPAMSAGGEVV---ADYC 911

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G     HPL   +  L  +G +          G  I +A +V+ +Q+  + KG+   +
Sbjct: 912  ANGLSLRAHPLAFLRETLTTLGARPCAALERVGNGGAIVVAGIVLMRQRPGSAKGTM--F 969

Query: 1018 VTFSEPAKEYEANF 1031
            +T  +         
Sbjct: 970  MTLEDETGIANLIV 983


>gi|21230559|ref|NP_636476.1| DNA polymerase III alpha chain [Xanthomonas campestris pv. campestris
            str. ATCC 33913]
 gi|66769450|ref|YP_244212.1| DNA polymerase III alpha chain [Xanthomonas campestris pv. campestris
            str. 8004]
 gi|21112134|gb|AAM40400.1| DNA polymerase III alpha chain [Xanthomonas campestris pv. campestris
            str. ATCC 33913]
 gi|66574782|gb|AAY50192.1| DNA polymerase III alpha chain [Xanthomonas campestris pv. campestris
            str. 8004]
          Length = 1064

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/1048 (25%), Positives = 463/1048 (44%), Gaps = 90/1048 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G+Q
Sbjct: 28   PAYAELHCLSDFSFLRGASSAEQLFARAHHCGYSALAITDECSLAGIVRGLEASRATGVQ 87

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                      VLLV  A GY +L  +++       GK +
Sbjct: 88   LIVGSEFTLVDGTRF----------------VLLVENAHGYPQLCSVITTGRRA-AGKGA 130

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + ++    +   ++ G     +   +       AE+     +++F +R ++ ++ 
Sbjct: 131  YRLGRAEVEAHFRD---VVPG-----VFALWLPGDQPQAEQGA-WLQRVFAERAFLAVEL 181

Query: 189  HRGYDRYRESQVVQLAYTH-ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D     Q +Q       +  +A+ +       D    D L A+ H+  ++      
Sbjct: 182  HREQDDAARLQALQALAQQLGMSALASGDVQMAQRRDRIVQDTLTAIRHTLPLADCGAHL 241

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  + +I+      L+ +VE+A+RC+F L       PR +  +       
Sbjct: 242  FRNGERHLRPRRALGNIYPHA--LLQASVELAQRCTFDLSKVQYTYPRELVPQG----HT 295

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR    AG+  R  +GA A+         ++D EL +IA   +  +FL V D +++
Sbjct: 296  PASYLRQLTEAGMRERWPEGAPAQ------VVAQIDSELELIAYKGYEAFFLTVQDVVRF 349

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I +  GRGS A S   YAL IT ++P    LL  RFL+ +R   PD D+DF  +R
Sbjct: 350  ARAQGI-LCQGRGSSANSAVCYALGITAVNPSETRLLMARFLSKERDEPPDIDVDFEHER 408

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L           
Sbjct: 409  REEVLQYVYTKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGDT 468

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               Q IA+        LA+P ++++L +++ L    RH S H  G VI D PLS LVP+ 
Sbjct: 469  PMEQRIAE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSMLVPVE 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P +D
Sbjct: 525  NAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYTIATLPGED 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
              TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  
Sbjct: 585  AATYKMIQRADTVGVFQIESRAQMAMLPRLKPREFYDLVIEVAIVRPGPIQGDMVHPYLR 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK- 722
            R+ G E +    P ++ +L  T G+ ++QEQVM++  + +GY+ SEAD LRR+M    + 
Sbjct: 645  RRQGYEPVSFPSPGVEEILGRTLGIPLFQEQVMELV-IHAGYTDSEADQLRRSMAAWRRG 703

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             +M+  + R     +  G +      IFE +  F  YGF +SHAA++A + Y + W+K H
Sbjct: 704  GDMEPHRVRIRELMAGRGYAPEFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRH 763

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDAR-----QFNIQIMPPSVNTPCVDFKVGDNRIY- 836
             P  F    +  +        +  QDAR     +  ++++P  V     D  +   R + 
Sbjct: 764  EPAAFACGLLNAQPMGFYSASQIVQDARRGSPERQRVEVLPVDVLHSDWDNILVGGRPWH 823

Query: 837  ------------YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
                          L  + G+       I+ A A +PF  + D C R     L+ +   +
Sbjct: 824  SDADPGEQPAIRLGLRQVSGLSEKVVERIVAARAQRPFADIGDLCLRA---ALDEKARLA 880

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  AGAL     +R     ++  +                 +        + ++   +  
Sbjct: 881  LAEAGALQSMVGNRNAARWAMAGV------------EARRPLLPGSPAERAVELPAPRAG 928

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
             E        + R +G     HP+ + +P + +  I G  E  A   G+ + +A +V  +
Sbjct: 929  EE-----ILADYRAVGLSLRQHPMALLRPQMLQRRILGLRELQARRHGSGVHVAGLVTQR 983

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            Q+  T KG+   +VT  +         +
Sbjct: 984  QRPATAKGT--IFVTLEDEHGMINVIVW 1009


>gi|300693740|ref|YP_003749713.1| DNA polymerase iii, alpha subunit [Ralstonia solanacearum PSI07]
 gi|299075777|emb|CBJ35082.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum PSI07]
          Length = 1075

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/1057 (24%), Positives = 445/1057 (42%), Gaps = 79/1057 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA   + ++++  A    A+A+TD  ++   +     A  AG+ 
Sbjct: 12   PDYAELHCISNFTFLTGASHPHELVERAKALGYQALALTDECSVAGTVRAHMAAKEAGLT 71

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             II             + +    P+     +VLL    +GY  L E +++  L    K  
Sbjct: 72   LII--------GSRFTVRDAQGEPW---LRLVLLAQDIDGYGNLCECITQARLA-APKGD 119

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             R+    L         +        I    +    +    +    +++FGDRL + L+ 
Sbjct: 120  YRLLADDLAAPAGGLAHLRGMPQCLAILLPDYDPDPRHLLAQAQWCRQVFGDRLSMALEL 179

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
              R  D      V  ++   ++P+VAT +    S +    HDVL A+  S  +++     
Sbjct: 180  PLRHADDRHRGTVSAVSDQTDVPMVATGDVAMHSRQRKPLHDVLTAIRLSRPIAECGLEL 239

Query: 247  RVTPDHYLKNRSEMVSIFSDLPE----ALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              + +  ++ R  M   F    E     L  +VE+A  C F L       P  +  E   
Sbjct: 240  APSAEQAMRTR--MQLAFFYQGERGAKVLRRSVELASLCDFSLDEVEYAYPHEVVPEG-- 295

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +     L  + +AG E R  +   AK       + ++  EL +IA +++  +FL V D
Sbjct: 296  --QTPAGYLHAEVMAGAERRYGKDVPAK------VQAQIVEELALIAELRYEPFFLTVYD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+   I +  GRGS A S   Y L IT+++P   + LF RFL+  R   PD D+DF
Sbjct: 348  VVRFARSQGI-LCQGRGSAANSAVCYCLGITEVNPESGNTLFARFLSRARNEPPDIDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL +    ++++ K     
Sbjct: 407  EHQRREEVIQYIYKKYGLTRTALAAALITYRTRSALRDVGRALGIDLGVIEQVAKAQAWW 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                   Q        +      P V R   +  +L G  RH S H  G VI    LS+L
Sbjct: 467  DGKHEFAQRAGQ----QGLDPESPLVQRWAGLIGQLRGFPRHLSQHVGGFVIAQGKLSRL 522

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------AQRGVKV 596
            VP+      +  V Q++   +E   L+K D L L  LT ++++LD L             
Sbjct: 523  VPIENAAMPERRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMLDALPGRRAHYGAP 582

Query: 597  D---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            D   +  +P +D +TY +++   T+G+FQ+ES   +  L  ++P    D++  V++ RPG
Sbjct: 583  DKLAMQHLPDEDPDTYDMISRAETIGVFQIESRAQQSMLPRLRPRTYYDLVIQVAIVRPG 642

Query: 654  PIDNIV--VYNNRKN-----GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            PI   +   Y  R+        + +    P +  +L+ T GV I+QEQVM+IA    G++
Sbjct: 643  PIQGGMVHPYLQRREAVRNGNPDCVTYPGPEVKAVLERTLGVPIFQEQVMEIAMKAGGFT 702

Query: 707  LSEADVLRRAMGK-KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKS 764
              EAD LRR M   K K  + + + R +    +           +   +  FA+YGF +S
Sbjct: 703  ADEADRLRRDMAAWKRKGNLTQHQARLMKEMVEVRHYDPAFVEALCRQMEGFAEYGFPES 762

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAA +A ++Y ++++K H P  F AA +  +        +  Q+AR+  ++++P  V   
Sbjct: 763  HAAGFARLAYVSSYLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSRVRVLPADVTAS 822

Query: 825  CVDFKV--------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
              D  +        G   I   L+ I+G+    A  I+   A  PF S+ED   R    +
Sbjct: 823  AWDSTLHARPDGEGGQPDIRLGLSRIRGMRPPAAERIVATRAQAPFSSVEDLAHRAALDR 882

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             +  VL +     +    G+ R  L Q+L             +    ++           
Sbjct: 883  HDLSVLAAANALLS--LAGHRRQALWQTLAL-----------QEPGQDHALLRGARPVEA 929

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
             + L   S+    V    +   LG     HPL + +P L +M             G   R
Sbjct: 930  PLVLPAPSLGEEVV---ADYGSLGLSLQSHPLSLLRPRLERMRFVTAATLAGYRNGQLAR 986

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +V  +Q+  T KG+   +V+  +         +P
Sbjct: 987  ACGIVTVRQRPGTAKGT--IFVSIEDETGVVNVVLWP 1021


>gi|110635592|ref|YP_675800.1| DNA polymerase III, alpha subunit [Mesorhizobium sp. BNC1]
 gi|110286576|gb|ABG64635.1| error-prone DNA polymerase, DnaE-like protein [Chelativorans sp.
            BNC1]
          Length = 1126

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/1064 (22%), Positives = 446/1064 (41%), Gaps = 80/1064 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P++    V S++S L GA     ++         A+ + D N +   +    ++  
Sbjct: 1    MTAAPAYAEFGVQSNFSFLRGASRPEELVVAAKLLGFSAMGLADRNTVAGVVRAWVQSKY 60

Query: 65   AGI-QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
              + +     +L       L  +          P I+      +G+  L  ++++  + +
Sbjct: 61   IKLTEESEPARLPYHPGCRLVFS-------DGTPDILAYPQDRQGWAHLCRMLTKANMRE 113

Query: 124  Q-GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +  K +  +      E G +  + +      P D+             L   K  F + +
Sbjct: 114  ESEKGAPVLLAEDFWEWGDQISLAILPDLQAPGDKT---------LAFLKAVKARFKESV 164

Query: 183  YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ +   + G DR+R +Q   +A    +PL+ATN+ L+ + E     DVL A+  +T +S
Sbjct: 165  WLAVAPSYGGDDRWRLAQAAGMAEAVGVPLMATNDVLYHAAEQRSLQDVLTAIRLNTTIS 224

Query: 242  QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            +         + ++K   EM  +F   PEAL  T+  A   SF L       P     E 
Sbjct: 225  EAGFALEANAERHMKPPEEMARLFRSYPEALAETLRFAESLSFSLSELEHNYP----DEV 280

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +     + EL      G + R  +G        +  ++ +  EL+++ R  ++ YFL V
Sbjct: 281  SESGLPAQEELERLTWEGAKERFPRGI------PEAQKELIRKELDLVKRKNYARYFLTV 334

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +++A+   I +  GRGS A S+  Y L ITD+ P     L ERF++ +R   PD D+
Sbjct: 335  YDIMRYARSQGI-LCQGRGSAANSLICYCLRITDVGPDIMDHLLERFISEERGEPPDIDV 393

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR+EVI Y+  KY  +  A   +  S + + ALR+V + L +       L   I 
Sbjct: 394  DFEHQRREEVIAYIYEKYSEKHTALACSVISYRGRLALREVAKVLGLSEDVTSALSGSIW 453

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
               +  V   AI           ADP   +++ ++  + G  RH S H  G VI    L 
Sbjct: 454  GWSSEEVGDTAIKAAG----LNKADPRTKQMVNLANGIMGFPRHLSQHVGGFVITKDRLD 509

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD--- 597
            ++VP+ +    +  + +++   ++  GL+K D L L  L+ LQ++   L ++    D   
Sbjct: 510  EIVPIVKTAMEERKMVEWDKDDLDNVGLLKVDVLALGMLSCLQRAFGLLKEKYDVRDDYG 569

Query: 598  ----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ I  +    Y +++   T+G+FQ+ES      L  +QP    D++  V++ RPG
Sbjct: 570  RPLELATIQPELEPVYDMISRADTIGVFQVESRAQMSMLPRLQPRTFYDLVIEVAIVRPG 629

Query: 654  PI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PI  D +  Y  R+  +EK   + P ++ +LK+T GV ++QEQ M+IA +  G+   EAD
Sbjct: 630  PIQGDMVHPYLKRRERQEKPEYVRPELEAILKKTLGVPLFQEQAMKIAIVAGGFEPWEAD 689

Query: 712  VLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRAM   K    +   K + I+G    G  +  A   F  +  F +YGF +SHAA++A
Sbjct: 690  RLRRAMATFKRTGTVTDYKHKLINGMEARGYPRAFAERCFRQIEGFGEYGFPESHAASFA 749

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++ Y +AW K +YP  F AA +  +        +  +DAR+  ++I    +N+   D  +
Sbjct: 750  LLVYASAWFKAYYPDVFCAAILNSQPMGFYAPAQLVRDAREHGVEIREVDINSSKWDCTL 809

Query: 831  G----------------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
                                   ++ +      +KG+       ++       + S+ D 
Sbjct: 810  EEASFDPARVADRHAGMRSIIRTEDAVRLGFRQVKGLAEADMEQLVRNRGVG-YRSVRDL 868

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              R     L++ V+  L  A A    G  R   L ++       Q +++ R      +  
Sbjct: 869  WLR---SGLSKSVIARLAEADAFRSLGLDRRTALWAV-------QALDETRAADRLPLLD 918

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
              +    +     +      S+   ++ + L      HP+   +  L    +   E    
Sbjct: 919  RPEINLGEDEPEVRLPSMPLSMHVVHDYQSLSLSLKAHPVSFLRDQLAAEKVVPNERLQD 978

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               G  + +A +V+ +Q+  T K   + ++T  +         +
Sbjct: 979  LDNGRRVSVAGLVLIRQRPGTAKN--VIFMTIEDETGIANIVVW 1020


>gi|330428421|gb|AEC19755.1| DNA polymerase III alpha subunit [Pusillimonas sp. T7-7]
          Length = 1039

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/1038 (25%), Positives = 453/1038 (43%), Gaps = 69/1038 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P++  L   S++S L+GA     ++ + A     A+A++D  +L   +    +A    
Sbjct: 2    NPPTYAELDCISNFSFLQGASHPEELVQRAAQLGYEALALSDECSLAGVVRAWTEAKKQR 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+ II            K+             I++L  T  GY  L EL++        K
Sbjct: 62   IKLII--------GSRFKLDGM---------HIIILARTLNGYGNLSELITLAR-RSCDK 103

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               ++ L  +    +    +        I +  +  S    +  +   ++ F  RL++ L
Sbjct: 104  GQYQLSLQNILAPSSGHEHLAHMPDCLVIFKPGYGASMSELDTHIPLLQQAFPGRLWLGL 163

Query: 187  QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H  Y D    + +   A   +L LVAT             HD + A+     V     
Sbjct: 164  SLHHQYADAQHLATLQAAAERFDLKLVATGQVQMHVRSRQPMHDTITAIRLKQTVQDCGY 223

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              +   +HYL+ R  + +I+ +  +AL  T+ ++R C+F L+      P+ I        
Sbjct: 224  ALQANAEHYLRGRLRLANIYPE--QALRETLFLSRLCTFELKEIQYQYPKEITPAGM--- 278

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR +  AG   R  +G  A+       + +L+ EL +IA +++  YFL V + +
Sbjct: 279  -TPSSYLRQETFAGAHRRYPKGVSAQ------LKSQLESELAIIAGLQYEPYFLTVYEIV 331

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+ ++I +  GRGS A S   Y L IT++DP   + LF RF++  R   PD D+DF  
Sbjct: 332  RFARSHDI-LCQGRGSAANSAVCYCLGITEVDPENGNALFARFISQARKEPPDIDVDFEH 390

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EVI+++  KYG +R A      + ++++ LRD G+AL +    +D++ K       
Sbjct: 391  QRREEVIQHIYKKYGRDRAALTAVVSTYRSRSVLRDTGKALGLDIELIDKVAKSFHYWSG 450

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                L+ IA+      AR A         +++ L G  RH S H  G VI    L +LVP
Sbjct: 451  KQSLLEKIAEHGLDANARTA----QMWAGLAETLMGFPRHLSQHPGGFVIAHDSLYRLVP 506

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPF 603
            +      +  V Q++   ++  GL+K D L L  L+ LQ+ L  + A+RG    +  I  
Sbjct: 507  IENAAMPERSVVQWDKDDLDAMGLLKVDILALGMLSALQRCLKLVSARRGQAFAMQNIES 566

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661
            DD ET+ ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +   Y
Sbjct: 567  DDAETFAMIQRADTIGVFQIESRAQMSMLPRLKPKVFYDLVVQVAIVRPGPIQGGMVHPY 626

Query: 662  NNRKNGKEKI-VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
              R+ G E    S  P I  +L+ T GV I+QEQ MQIA + + +S  EAD LRR+M   
Sbjct: 627  LRRRQGVEDCDDSPTPEIAKVLERTLGVPIFQEQAMQIAMVAANFSADEADELRRSMAAW 686

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            + K  +D  ++R I G   NG  +  A +IF  L  F +YGF +SH+A++A ++Y +AW+
Sbjct: 687  RRKGGVDAFRDRLIQGMINNGCPEDFAKSIFRQLEGFGEYGFPESHSASFAKLAYISAWL 746

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------N 833
            K H P  FL A +  +        +  QDAR+  + ++P  +     +  +         
Sbjct: 747  KCHEPEAFLTALLNSQPMGFYLPNQLVQDARRHQVVVLPSDIMISRWEAGLEPLGNSKRP 806

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +   L  IKG+    A  I  A   + F  ++D   R D    NR  +++L  A AL  
Sbjct: 807  AVRLGLNQIKGLSEAAALRIECARKQQAFSCVQDLAVRADL---NRSAMDALAAANALHA 863

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R Q           A+W   ++T +        +      +     S        +
Sbjct: 864  LSGHRRQ-----------ARWQAASQTFQ-----GLLRNAPIIDLLPPSLSAPTEGQSIK 907

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            ++ + LG     HPL + +  L+                   R   +V  +Q+ +T KG 
Sbjct: 908  SDYQSLGLTLGRHPLALLRSTLQTRQFTQASTLNTYPDRRLARACGIVTGRQRPQTAKG- 966

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             + +VT  +         
Sbjct: 967  -VIFVTLEDETGNVNVIV 983


>gi|312887569|ref|ZP_07747163.1| DNA polymerase III, alpha subunit [Mucilaginibacter paludis DSM
            18603]
 gi|311299939|gb|EFQ77014.1| DNA polymerase III, alpha subunit [Mucilaginibacter paludis DSM
            18603]
          Length = 1066

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/1035 (24%), Positives = 448/1035 (43%), Gaps = 77/1035 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV S++S + G    + ++++ A      IAITD N++   +     A   GI  I
Sbjct: 3    YAELQVTSNFSFMRGGSHPDELVERAADLGYSKIAITDCNSMAGVVRAHMAAQIKGISLI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
              C                +      PS++   +    + RL  L++   L  + K    
Sbjct: 63   PAC----------------RLDLHNGPSLLAYPTDTSAWGRLCALLTLGNLRTE-KGKCE 105

Query: 131  ICLSWLQEIGTEGL--IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            +    L     +G+  I++  G+         F+     ++ L  ++   G++LY+   R
Sbjct: 106  LYKKDLY-AHAQGIKFIVIPPGT-----LNASFDFDDAFKQDLEEYRAALGNQLYIAASR 159

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
             + G D  R  ++ QL     +P+VAT +  + + E  E  DV   V     +       
Sbjct: 160  SYSGDDAKRFYRIKQL----GVPMVATGDVHYHNPERRELQDVETCVREKCTIHTAGYKL 215

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + YLK   E+  +F   PEALE T+EIA  C F L     + P ++  +     + 
Sbjct: 216  HANAERYLKPLDELERLFRQYPEALERTMEIADACDFSLDTLKYLEPVWVSPDG----RS 271

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L      G +   A+  + K      +R++++FEL    + K + YFL + ++ + 
Sbjct: 272  ADEHLAELTWKGAKTVFAEDKLPK------HRKQIEFELAFFKKRKLAPYFLRIYEYTRE 325

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K  I    GRGS A     + L IT ++P +  LLF RF++  R   PD D+DF  +R
Sbjct: 326  ADKRAILY-QGRGSAANCTVCFCLGITPVNPDKSRLLFSRFMSDSREEWPDVDVDFEHER 384

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+E+I+++   YG E  A + T    + K A+RDVG+A+ +    + RL   I +     
Sbjct: 385  REEIIQWIYETYGREHAAIVATVTQERYKGAIRDVGKAMGLSEDTIKRLGGGIWDFSEEA 444

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             + + I      +     D  + ++LE++++L G  R    H  G VI    LS + P+ 
Sbjct: 445  FNRERIIG----QGLNPDDTVLKKVLELTEQLMGFPRQLGQHTGGFVIMRCKLSDICPVL 500

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                 +    ++N   +E  G++K D L L  LT ++K+   + Q   + + L  +P DD
Sbjct: 501  NARMENRTQLEWNKDDLEALGILKVDVLALGMLTCIRKAFSLMKQHYNLPLTLESLPQDD 560

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
               Y ++    TLG+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  
Sbjct: 561  SRVYDMICKADTLGVFQIESRAQMSMLPRLKPRVFYDLVIEVAIVRPGPIQGDMVHPYLR 620

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R++G + I      ++ +L  T+GV ++QEQ M+IA + +G+S +EAD LRR+M   K K
Sbjct: 621  RRDGIDPIEYPSQELEDILGRTKGVPLFQEQAMEIAIVAAGFSPAEADQLRRSMATFKAK 680

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              + + +++ + G    G  +  A  IF+ L  F  YGF +SHA A+A + Y + W+K H
Sbjct: 681  GLVSQFRKKLVDGMVAKGYEEEFAKRIFKQLEGFGSYGFPESHATAFAHLVYISCWLKCH 740

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYY 837
            YP  F  A +  +     +  +   DAR   + +    +N    D  + D       +  
Sbjct: 741  YPDVFCTALLNSQPMGFYQPAEIVDDARNHGVSVREVDINYSGWDNTLEDKDGKYYAVRL 800

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
                + G+     + ++                ++    + +  LE L  A A    G  
Sbjct: 801  GFRQVSGLREKDMQLLINNRGTG-----YQAICQLHDAGVPQDALEKLADADAFRSIGSD 855

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R Q L  +  +           ++K   +F  ++   S +I+L    +   +     +  
Sbjct: 856  RRQALWEVSAL-----------SDKPTGLFTGQQ-VPSAQISLP---IMTPAEHVVQDFA 900

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G     HP+   +  L  + +    +      G+ +++A M+  +Q+  T KG  + +
Sbjct: 901  TTGLSLKAHPVSFVREQLDLLKVTPTGQLKNLKNGDQVKVAGMITVRQRPGTAKG--VVF 958

Query: 1018 VTFSEPAKEYEANFF 1032
            +T  +         +
Sbjct: 959  ITIKDETGYSNLVVW 973


>gi|71151845|sp|Q8PBL8|DNAE2_XANCP RecName: Full=Error-prone DNA polymerase
 gi|78099246|sp|Q4URY1|DNAE2_XANC8 RecName: Full=Error-prone DNA polymerase
          Length = 1082

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/1048 (25%), Positives = 463/1048 (44%), Gaps = 90/1048 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G+Q
Sbjct: 46   PAYAELHCLSDFSFLRGASSAEQLFARAHHCGYSALAITDECSLAGIVRGLEASRATGVQ 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                      VLLV  A GY +L  +++       GK +
Sbjct: 106  LIVGSEFTLVDGTRF----------------VLLVENAHGYPQLCSVITTGRRA-AGKGA 148

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + ++    +   ++ G     +   +       AE+     +++F +R ++ ++ 
Sbjct: 149  YRLGRAEVEAHFRD---VVPG-----VFALWLPGDQPQAEQGA-WLQRVFAERAFLAVEL 199

Query: 189  HRGYDRYRESQVVQLAYTH-ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D     Q +Q       +  +A+ +       D    D L A+ H+  ++      
Sbjct: 200  HREQDDAARLQALQALAQQLGMSALASGDVQMAQRRDRIVQDTLTAIRHTLPLADCGAHL 259

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  + +I+      L+ +VE+A+RC+F L       PR +  +       
Sbjct: 260  FRNGERHLRPRRALGNIYPHA--LLQASVELAQRCTFDLSKVQYTYPRELVPQG----HT 313

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR    AG+  R  +GA A+         ++D EL +IA   +  +FL V D +++
Sbjct: 314  PASYLRQLTEAGMRERWPEGAPAQ------VVAQIDSELELIAYKGYEAFFLTVQDVVRF 367

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I +  GRGS A S   YAL IT ++P    LL  RFL+ +R   PD D+DF  +R
Sbjct: 368  ARAQGI-LCQGRGSSANSAVCYALGITAVNPSETRLLMARFLSKERDEPPDIDVDFEHER 426

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L           
Sbjct: 427  REEVLQYVYTKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGDT 486

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               Q IA+        LA+P ++++L +++ L    RH S H  G VI D PLS LVP+ 
Sbjct: 487  PMEQRIAE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSMLVPVE 542

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P +D
Sbjct: 543  NAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYTIATLPGED 602

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
              TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  
Sbjct: 603  AATYKMIQRADTVGVFQIESRAQMAMLPRLKPREFYDLVIEVAIVRPGPIQGDMVHPYLR 662

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK- 722
            R+ G E +    P ++ +L  T G+ ++QEQVM++  + +GY+ SEAD LRR+M    + 
Sbjct: 663  RRQGYEPVSFPSPGVEEILGRTLGIPLFQEQVMELV-IHAGYTDSEADQLRRSMAAWRRG 721

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             +M+  + R     +  G +      IFE +  F  YGF +SHAA++A + Y + W+K H
Sbjct: 722  GDMEPHRVRIRELMAGRGYAPEFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRH 781

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDAR-----QFNIQIMPPSVNTPCVDFKVGDNRIY- 836
             P  F    +  +        +  QDAR     +  ++++P  V     D  +   R + 
Sbjct: 782  EPAAFACGLLNAQPMGFYSASQIVQDARRGSPERQRVEVLPVDVLHSDWDNILVGGRPWH 841

Query: 837  ------------YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
                          L  + G+       I+ A A +PF  + D C R     L+ +   +
Sbjct: 842  SDADPGEQPAIRLGLRQVSGLSEKVVERIVAARAQRPFADIGDLCLRA---ALDEKARLA 898

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  AGAL     +R     ++  +                 +        + ++   +  
Sbjct: 899  LAEAGALQSMVGNRNAARWAMAGV------------EARRPLLPGSPAERAVELPAPRAG 946

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
             E        + R +G     HP+ + +P + +  I G  E  A   G+ + +A +V  +
Sbjct: 947  EE-----ILADYRAVGLSLRQHPMALLRPQMLQRRILGLRELQARRHGSGVHVAGLVTQR 1001

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            Q+  T KG+   +VT  +         +
Sbjct: 1002 QRPATAKGT--IFVTLEDEHGMINVIVW 1027


>gi|75907825|ref|YP_322121.1| DNA polymerase III subunit alpha [Anabaena variabilis ATCC 29413]
 gi|75701550|gb|ABA21226.1| intein [Anabaena variabilis ATCC 29413]
          Length = 877

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/811 (38%), Positives = 465/811 (57%), Gaps = 61/811 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+  A    AIA+TD   ++ A+E  +   +  I+P
Sbjct: 2   SFVPLHIHSDYSLLDGASQLPELIDQAIALGMKAIAVTDHGVMYGAIELLKICRSKNIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ I   D  K     +   P    +VL     +GY+ L++L +  +L   QGK  
Sbjct: 62  IIGNEMYILNGDLAKQ----ERGRPKYHQVVL-AKNTKGYKNLVKLTTISHLQGVQGKGI 116

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L+E   EGLI+ +    G I +A   N    A K    +K +FGD  Y+ 
Sbjct: 117 FSRPCINKDLLKEYH-EGLIVTSACLGGEIPQAILSNRPDAARKVAKWYKDVFGDDFYLE 175

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR    +++++A   ++  VATN+S ++S  D EAHD L+ +    ++S+  
Sbjct: 176 IQDHGSQEDRIVNVEIIKIARELDIKFVATNDSHYISCFDVEAHDALLCIQTGKLISEDK 235

Query: 245 RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           R R +   YLK+  EM  +F D      + EA+  T E+A +      +  P +P +   
Sbjct: 236 RMRYSGTEYLKSGEEMKLLFRDHLTDDVIAEAIATTEEVADKIEPYHIMGEPRIPNYPIP 295

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                    +  +   A  GL  +L +   ++      YR+RL++EL ++ +M FS YFL
Sbjct: 296 SG----HTPDTYVEEVAWQGLLDKLNR--KSRNEVEPVYRERLEYELKMLQQMGFSSYFL 349

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           +V D+I++A+ NNIPVGPGRGS AGS+ AY + IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 350 VVWDYIKFARDNNIPVGPGRGSAAGSLVAYTMGITNIDPVHHGLLFERFLNPERKSMPDI 409

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D DFC ++RD+VI YV +KYG ERVAQIITF  L +KA L+DV R L +PY + D++ KL
Sbjct: 410 DTDFCIEQRDKVIEYVTDKYGKERVAQIITFNRLTSKAVLKDVARVLNIPYGEADKMAKL 469

Query: 479 IPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           IP     P  L+ +      +  F+E    DP V   L+++ ++EG  +    HAAG+VI
Sbjct: 470 IPVVRGKPTKLKVMVSDTTPEPEFKEKYDNDPRVRHWLDMAMRIEGTNKTFGVHAAGVVI 529

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
              PL ++VP+ ++      +TQ+ M+ +E  GL+K DFLGLK LT++QK++D + ++  
Sbjct: 530 SADPLDEIVPLQKN-NDGSVITQYFMEDLESMGLLKMDFLGLKNLTMIQKTIDLIEEKHG 588

Query: 594 -------------------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
                               K +   +P D  +TY LL +    GIFQLESSGM+Q +  
Sbjct: 589 FRIDPYEITSQERKAQKILAKGEYKTLPKDVQKTYELLESGELEGIFQLESSGMKQIVRD 648

Query: 635 MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           ++P  IEDI ++++LYRPGP+D   I  + NRK+G+E I     +++P+L ET G+++YQ
Sbjct: 649 LKPSNIEDISSILALYRPGPLDAGLIPKFINRKHGRENIDYESQVLEPILNETYGIMVYQ 708

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQ+M+IAQ ++GY+L +AD+LRRAMGKK   EM KQ+E+FI G++KNG+ K +A  +FE 
Sbjct: 709 EQIMKIAQDMAGYTLGQADLLRRAMGKKKVSEMQKQQEKFIDGSTKNGVKKQVAEKLFED 768

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           + KFA+Y            +SY T  +   Y
Sbjct: 769 MLKFAEYC-----------LSYDTEVLTVEY 788


>gi|17231070|ref|NP_487618.1| DNA polymerase III subunit alpha [Nostoc sp. PCC 7120]
 gi|17132711|dbj|BAB75277.1| DNA polymerase III alpha subunit [Nostoc sp. PCC 7120]
          Length = 877

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/811 (38%), Positives = 468/811 (57%), Gaps = 61/811 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+  A    AIA+TD   ++ A+E  +   +  I+P
Sbjct: 2   SFVPLHIHSDYSLLDGASQLPELIDQAIALGMKAIAVTDHGVMYGAIELLKICRSKNIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ I   D L+   +G+  +      V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62  IIGNEMYILNGD-LEKQERGRPKY----HQVVLAKNTKGYKNLVKLTTISHLQGVQGKGI 116

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L+E   EGLI+ +    G I +A   N    A K    +K +FGD  Y+ 
Sbjct: 117 FSRPCINKDLLKEYH-EGLIVTSACLGGEIPQAILSNRPDAARKVAKWYKDVFGDDFYLE 175

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR    +++++A   E+  VATN+S ++S  D EAHD L+ +    ++S+  
Sbjct: 176 IQDHGSQEDRIVNVEIIKIARELEIKFVATNDSHYISCFDVEAHDALLCIQTGKLISEDK 235

Query: 245 RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           R R +   YLK+  EM  +F D      + EA+  T E+A +      +  P +P +   
Sbjct: 236 RMRYSGTEYLKSGEEMKLLFRDHLTDDVIAEAIATTEEVADKVEPYHIMGEPRIPNYPIP 295

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                    +  +   A  GL  +L +   ++      YR+RL++EL ++ +M FS YFL
Sbjct: 296 SG----HTPDTYVEEVAWQGLLEKLNR--KSRNEVEPVYRERLEYELKMLQQMGFSSYFL 349

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           +V D+I++A+ NNIPVGPGRGS AGS+ AY + IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 350 VVWDYIKFARDNNIPVGPGRGSAAGSLVAYTMGITNIDPVHHGLLFERFLNPERKSMPDI 409

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D DFC ++RD+VI YV +KYG ERVAQIITF  L +KA L+DV R L +PY + D++ KL
Sbjct: 410 DTDFCIEQRDKVIEYVTDKYGKERVAQIITFNRLTSKAVLKDVARVLNIPYGESDKMAKL 469

Query: 479 IPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           IP     P  L+ +      +  F+E    DP V   L+++ ++EG  +    HAAG+VI
Sbjct: 470 IPVVRGKPTKLKVMISDATPEPEFKEKYDNDPRVRHWLDMAMRIEGTNKTFGVHAAGVVI 529

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
              PL ++VP+ ++      +TQ+ M+ +E  GL+K DFLGLK LT++QK++D + ++  
Sbjct: 530 SADPLDEIVPLQKN-NDGSVITQYFMEDLESMGLLKMDFLGLKNLTMIQKTIDLIEEKHG 588

Query: 594 -------------------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
                               K +   +P D  +TY LL +    GIFQLESSGM+Q +  
Sbjct: 589 FRIDPYEITSQERKAQKILAKGEYKTLPKDVQKTYELLESGELEGIFQLESSGMKQIVRD 648

Query: 635 MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           ++P  IEDI ++++LYRPGP+D   I  + NRK+G+E I     L++P+L ET G+++YQ
Sbjct: 649 LKPSNIEDISSILALYRPGPLDAGLIPKFINRKHGRENIDYESQLLEPILNETYGIMVYQ 708

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQ+M+IAQ ++GY+L +AD+LRRAMGKK   EM KQ+E+FI G++KNG+ K +A  +F+ 
Sbjct: 709 EQIMKIAQDMAGYTLGQADLLRRAMGKKKVSEMQKQQEKFIDGSTKNGVKKQVAEKLFDD 768

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           + KFA+Y            +SY T  +   Y
Sbjct: 769 MLKFAEYC-----------LSYDTEVLTVEY 788


>gi|116254421|ref|YP_770259.1| DNA polymerase III alpha subunit [Rhizobium leguminosarum bv. viciae
            3841]
 gi|115259069|emb|CAK10180.1| putative DNA polymerase I alpha subunit [Rhizobium leguminosarum bv.
            viciae 3841]
          Length = 1154

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/1075 (24%), Positives = 462/1075 (42%), Gaps = 79/1075 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++  P+F  +   +++S LEGA     ++ + A  +   + I D N++   +    +A  
Sbjct: 1    MKSEPAFFEIGTRTNFSFLEGASGPEEMVVQAAHLRLGGLGIADRNSVAGVVRAHAQAEQ 60

Query: 65   AGIQPIIGCQLDIDMQ---------DNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIE 114
               +     ++    +         D +++    +  F    P I+       G+  L  
Sbjct: 61   LEERYKNRDEIMAQAKKEGKEAEILDPIRIQPGARLVFSDGTPDILAYPCNRRGWANLCR 120

Query: 115  LVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            L++   L ++  K S  +  + L + G E ++ L    +     A         E  L  
Sbjct: 121  LLTAGNLKEEAVKGSCILTEAELMKWGDEMMLALVPDRT----LAGHQAGQSTLEDYLER 176

Query: 174  FKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            F++ F    Y+ L   + G DR   + +  LA  + +PL+ATN  L+   E     DV++
Sbjct: 177  FRRRFRKAFYMALAPAYDGRDRQVFAVLAMLAARNRVPLIATNQPLYHHPERRPLSDVVI 236

Query: 233  AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
            A+     ++Q         + YLK+  EM  IF D P A+ENT     R  F L+     
Sbjct: 237  AIREHVQIAQAGFLLAPNAERYLKDSREMTRIFRDYPNAVENTQVFFDRLIFSLKELEHN 296

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             P       +D  +  +  L     AG   R  +G   K        Q++D+EL++I + 
Sbjct: 297  YPP-----ENDPGETPQETLERLTRAGAARRYPEGIPPK------VAQQIDYELDLIKKK 345

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            K++ YFL V   IQ A+     +  GRGS A SV  Y L IT++DP + +LLF+RF++ D
Sbjct: 346  KYASYFLTVHRIIQHARYKLNILCQGRGSAANSVICYCLEITEVDPEKSTLLFDRFISMD 405

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+DF  DRR+EVI+++   Y  E         + + ++A R+V +A  +    
Sbjct: 406  RDEPPDIDVDFEHDRREEVIQFIYENYKREHAGLTAGVTTYRTRSAGREVSKAFGLSEDV 465

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
               +  L+       +S      D++     + DP    +L+ + +L G  RH + H  G
Sbjct: 466  QSAISSLVWGWSEDNLS----ERDAKAAGLDIKDPVTRNVLQYASELLGFPRHLTQHVGG 521

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             VI    L ++VP+ +    D  + +++   ++   ++K D L L  LT L+K+   L  
Sbjct: 522  FVITRDRLDEVVPIMKTAMPDRYMIEWDKDDLDNVKILKVDVLALGMLTCLRKAFSLLEL 581

Query: 592  RG----VKVDLSLIPFDD--HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
                     DL      D     Y ++    TLG+FQ+ES      L  ++P    D++ 
Sbjct: 582  HYDVKKTLADLGNKEHGDEGEPVYEMMGRADTLGVFQIESRAQMSMLPRLKPKVFYDLVI 641

Query: 646  LVSLYRPGPI--DNIVVYNNRKNGKE---KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             V++ RPGPI  D +  Y  R+  +     I    P +  +LK T GV ++QEQ MQIA 
Sbjct: 642  EVAIVRPGPIQGDMVHPYLKRREQRAKNIPIEYPSPELKDVLKRTLGVPLFQEQAMQIAI 701

Query: 701  LLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
              +G+  +EAD LRR+M   K    +D  K+RF+ G  +N  ++  A   F+ +  F +Y
Sbjct: 702  TAAGFKPAEADRLRRSMATFKRTGTIDNFKKRFVDGMIENNYAREFAEQCFKQIKGFGEY 761

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GF +SHAA++A++ Y ++W+K +YP  F AA +  +        +  +DAR+  ++I+P 
Sbjct: 762  GFPESHAASFALLVYASSWLKAYYPDIFCAAMLNSQPMGFYAPAQLVRDAREHGVKILPV 821

Query: 820  SVNTPCVDFKVG----------------------DNRIYYSLAAIKGVGTTTARHIMEAS 857
             +N    D  +                        + +      IKG+ T     +++  
Sbjct: 822  DINESNWDCDLEEAAFDRNAVDFRHHEMREIIKTRHAVRLGFRQIKGLSTDDMERLVDNR 881

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
             +  + S+ D   R     L + V+E L  A A      SR + L ++  +       + 
Sbjct: 882  GEG-YSSVRDLWLR---SGLQKSVIERLADADAFQSLKLSRREALWAVRAL-------DV 930

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                +   +F   +        + K        +   + R L      HP+   +  LRK
Sbjct: 931  KSAAEELPLFEQVRHVDLQAEPVAKLPEMLPGEQVIEDYRYLSLSLKAHPVSFLREELRK 990

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             G+    + +    G  + +A +V+ +Q+  + KG  + ++T  +         +
Sbjct: 991  AGVTRSVDLLKVANGQRVTIAGLVLVRQRPGSAKG--VIFMTLEDETGVANVIVW 1043


>gi|326333953|ref|ZP_08200183.1| DNA polymerase III, alpha subunit [Nocardioidaceae bacterium Broad-1]
 gi|325948232|gb|EGD40342.1| DNA polymerase III, alpha subunit [Nocardioidaceae bacterium Broad-1]
          Length = 1141

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1070 (26%), Positives = 458/1070 (42%), Gaps = 90/1070 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS +S L+GA S + ++ +        IAITD +  + A  F++ A   G   
Sbjct: 52   PYAELHAHSDFSFLDGASSPSALVSEAIRKGLRGIAITDHDGFYGAPAFAEAAQKLGPTG 111

Query: 70   IIG--CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
                   +            Q     P    +++L    EGY++L   ++   L    K 
Sbjct: 112  ESDRLLTVYGAELSLGLTKPQNGVADPEGSHLLVLARGVEGYRQLAGAITEAQLRGDEKG 171

Query: 128  SVRICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
                 L  L +    G  ++LTG   G + +A        A + L      F  D + V 
Sbjct: 172  RPTYDLDELADRARSGSWLILTGCRKGAVRQALTGTGPIAAARALRELTDRFGRDNVVVE 231

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-K 243
            L       D Y    +  +A    LP VATNN  + + + +   D L AV     +S+  
Sbjct: 232  LTDRGHPTDSYDNDLLAGIAREAGLPTVATNNVHYATPDRHRVADALAAVRARRTLSEIA 291

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                  P  Y+++  EM  +F   P A+  +VEIA  C+F L+   P LP+    E +  
Sbjct: 292  GWLPAGPVAYVRSGEEMEHLFRRYPGAVARSVEIAEECAFDLRKATPKLPKRGIPEGE-- 349

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                 + LR+    G   R AQ   A     +  R+R++ EL+VI R  F GYF+IV D 
Sbjct: 350  --TAASRLRHLTEEGFAERYAQAYAADPEFVEKARERVEHELDVIERKDFPGYFVIVHDI 407

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +A+  +I +  GRGS A S   YAL IT IDP+ + L FERF++  R   PD D+DF 
Sbjct: 408  VDYARSQDI-LCQGRGSAAASAVCYALGITAIDPVFYELPFERFISEHREEEPDIDVDFD 466

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+R++VI++V ++YG    AQ+      + K A+RD  +AL     Q D   K +    
Sbjct: 467  SDKREKVIQWVYDRYGRRNAAQVANIVGYRPKMAVRDAAKALGHSPGQQDAWSKHVGYSR 526

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                            EA         +L ++ ++ G  RH   H+ G+V+ + P+ ++V
Sbjct: 527  V---------------EAPDDVGIPAPVLALAAEIHGAPRHLGIHSGGMVLTEEPIGEVV 571

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602
            P+ R       V Q++    E  GL+KFD LGL  L  L   ++   +  G    L+ IP
Sbjct: 572  PIERARMDKRTVIQWDKDAAEYMGLVKFDLLGLGMLAALDHMMNLAREHLGEGWTLATIP 631

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VV 660
             ++   Y +L    ++G+FQ+ES      L  +QP C  D+   ++L RPGP+       
Sbjct: 632  KEEPAVYDMLCRADSIGVFQVESRAQIGTLPRLQPRCFYDLAIEIALIRPGPVQGGAVHP 691

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R  G+E +   H L+ P+L+ T+GV ++QEQ+M++ ++L  +S  +AD+LRRAM  K
Sbjct: 692  YVRRATGREPVSYSHELLIPVLERTRGVPLFQEQLMEMGRVLGDFSHDDADLLRRAMGSK 751

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            +  E +D  KE+   G    G+++  A  ++  +  FA++GF +SHA ++A + Y ++W 
Sbjct: 752  RGVERIDSLKEKLYRGMRDKGMTEQTAKAVYTQILSFANFGFAESHALSFAKLVYASSWF 811

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV------------- 826
            K HYP  FLA  +  +       +   QDAR+  +++  P +                  
Sbjct: 812  KLHYPAAFLAGLLRAQPMGFYSPQSLTQDARRHGVEVRRPDLIRSQAAADLEPLDDDVSP 871

Query: 827  -------------------------DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
                                       + G+  +   L +++G+G   A+ I++A  + P
Sbjct: 872  TGKDECRLDGTKTEWVPGTPDPTPEHRRDGNFAVRLGLDSVRGIGKDVAQRIVKARTEAP 931

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F    D   R     L R  LE+L  AG LD F  SR Q L         A W E     
Sbjct: 932  FKDSLDLSRRA---GLERAQLEALATAGCLDVFTSSRRQALWQ-------AGWTETEDQL 981

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            +            ++   L        ++    +    G     HP    +  L   G+ 
Sbjct: 982  EGVRF-------TAETPALPGLDPVEETL---ADLWATGVTPGSHPFAHLRAGLTAAGLP 1031

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
               +   +  G  I +A +V  +Q+  T  G  + ++   +         
Sbjct: 1032 SIGDLPTSEPGRRITVAGLVTHRQRPGTAGG--VTFINLEDETGMLNVVC 1079


>gi|264678326|ref|YP_003278233.1| DNA polymerase III subunit alpha [Comamonas testosteroni CNB-2]
 gi|262208839|gb|ACY32937.1| DNA polymerase III, alpha subunit [Comamonas testosteroni CNB-2]
          Length = 1136

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/1086 (24%), Positives = 451/1086 (41%), Gaps = 112/1086 (10%)

Query: 1    LTQYLEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
            + Q + + P ++  L   S +S L GA S   ++ +  +    A+A+TD  ++  A+   
Sbjct: 29   VAQGMGRGPLAYAELHCLSHFSFLRGASSPAELVHRAKSLGYAALALTDECSVAGAVRAH 88

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            + A  + +  I G +                        IV+LV   +G+  L E ++  
Sbjct: 89   EAARDSDLHLIHGSEFAWGP-----------------LRIVVLVRDLQGWGNLCEFITVA 131

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE--KRLLTFKKL 177
                           +L +  +   ++  G     + +    ++S +      L      
Sbjct: 132  RSRAAKG-------EYLVDESSPWQLLQQGCECLLLPQREQLDASDLIAVTACLENVAAH 184

Query: 178  FGDR-LYVNLQRHRGYDRYRESQVVQLA-YTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F    L++ ++ H   D     Q +Q A     LPL+A  +    +       DV+ A+ 
Sbjct: 185  FSTNILWLGVELHLAPDDSLWLQTLQQAGVVLGLPLLACGDVHMHARSRKPLQDVVTAIR 244

Query: 236  HSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                V++     +   + +L++R  + S++      LE T+E+A RCSF L       P+
Sbjct: 245  LGRTVAECGFALQPNAERHLRSRLRLASLYPWA--MLEATLELAGRCSFSLDEIRYHYPQ 302

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                      +     L      G   R  QG        +D   +L  EL +I   K+ 
Sbjct: 303  ESVLPGMTATQT----LAWLTWDGAAGRYPQGI------PEDVHDQLHKELALIEDQKYE 352

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFL V D +++A+   I +  GRGS A S   Y L IT +DP   +LLFERF++ +R  
Sbjct: 353  MYFLTVHDIVRYARSVGI-LCQGRGSAANSAVCYCLGITAVDPENNNLLFERFISKERSE 411

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+Y+  KYG +R A        ++++ALRDVG+AL +P   +D 
Sbjct: 412  PPDIDVDFEHARREEVIQYIYGKYGRDRAALTAVVSCWRSRSALRDVGKALGLPADLIDA 471

Query: 475  LCKLIPNDPAH-----------------PVSLQAIADDSRFREARLAD------------ 505
            L K       H                   + +A+ +D   R+ + A+            
Sbjct: 472  LAKGQYWFSEHAQAQAQTHAEAADSAEEEQAPEALPEDWVQRKFQEAEVLAREMNCAVGA 531

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
              +   +E++ +L+   RH S H  G V+ +  L++LVP+     +   V Q++   ++ 
Sbjct: 532  HRLRLWIELAWQLKDSPRHLSQHVGGFVLTEGKLTRLVPVEPATMAKRSVIQWDKDDLDV 591

Query: 566  AGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GL+K D L L  LT+L+ +L +    RG    L  IP +D  TY ++    T+G FQ+E
Sbjct: 592  VGLLKVDVLALGMLTMLRNALNERTRWRGEPWGLHQIPQEDAATYEMICQADTVGTFQIE 651

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-----NRKNGKEKIVSIHPLID 679
            S      L  +QP    D++  V++ RPGPI   +V+       R   K  +    P + 
Sbjct: 652  SRAQMSMLPRLQPRTFYDLVVEVAIVRPGPIQGGMVHPYLLARERARRKLPLKLEKPELA 711

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASK 738
              LK T GV I+QEQVMQIA   + +S  +AD LRR+M   K K  + K +   I G   
Sbjct: 712  NALKRTLGVPIFQEQVMQIAMDAAKFSAGKADELRRSMAAWKRKGGVHKFERPLIDGMVA 771

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             G     A  IF  +  F +YGF +SHA ++A+++Y +AW+K H P  FL A +  +   
Sbjct: 772  RGYKLEFAQAIFAQMLGFGEYGFPESHAYSFALLAYASAWLKRHEPAIFLQALLNAQPMG 831

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------------DNRIYYSLAAIKGVG 846
                 +  QDAR+  ++++P  V        +                +   L  +  +G
Sbjct: 832  FYSPSQLVQDARRHGVRVLPVDVCHSHWHCTLEAPLQAMRGVAQPQPAVRLGLNRVARLG 891

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I   +A  P+  + D   R      ++  +E+L  A AL      R Q +    
Sbjct: 892  KAAALRIEGEAAQAPWKDVSDLAMRARL---DKADMEALAAADALRSLAGHRRQQMWD-- 946

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                               IFA +      ++ L + +     +    +    G     H
Sbjct: 947  ----------AAAQASLPPIFA-QAAIHEPRLELPQAAEGEEIM---FDYAATGLSLRRH 992

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            PL + +P L + G+K   E    + G  +R   +V  +Q+  T  G+   ++T  +    
Sbjct: 993  PLALLRPRLARHGLKTAAELRHMLPGQKVRACGIVTVRQRPPTANGTL--FITLEDETGV 1050

Query: 1027 YEANFF 1032
                 +
Sbjct: 1051 INLVVW 1056


>gi|13473732|ref|NP_105300.1| DNA polymerase III alpha chain [Mesorhizobium loti MAFF303099]
 gi|71151836|sp|Q98E34|DNAE2_RHILO RecName: Full=Error-prone DNA polymerase
 gi|14024483|dbj|BAB51086.1| DNA polymerase III alpha chain [Mesorhizobium loti MAFF303099]
          Length = 1118

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/1060 (24%), Positives = 440/1060 (41%), Gaps = 91/1060 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +    + S++S L GA     ++         AI + D N +   +   Q+A    +  
Sbjct: 8    PYAEFGIQSNFSFLRGASKPEELVVAAKLMGFSAIGLADRNTVAGVVRAWQQAKVEKLAY 67

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
              GC+L                     P I+       G+  L  ++++  L D+ ++  
Sbjct: 68   HPGCRLVF---------------GDGTPDILAYPRNRAGWGHLCRMLTQANLRDETEKGA 112

Query: 130  RIC-LSWLQEIGT-EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             +     L E G    L +L   ++G  D                  K  FG  L + + 
Sbjct: 113  TLLQRDDLLEWGDLMSLAVLPDLAAGAEDSLALLGQ----------IKDRFGRALRLGVS 162

Query: 188  -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
              + GYDR+R  Q   LA    +PL+ATN+ L+ + E     DVL A+  +T V++    
Sbjct: 163  PCYAGYDRFRIEQAAALAQVAGIPLMATNDVLYHTAERRPLQDVLTAIRLNTPVAEVGLE 222

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +LK   EM  +F   P+AL  T+  A   +F L       P    +     Q 
Sbjct: 223  LSANAERHLKPPLEMARLFRRHPQALAETLRFAEELTFSLSDLQYNYPDEPTESGLGPQA 282

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                EL   A  G   R   G            +R++ EL +I R+ ++ YFL V D ++
Sbjct: 283  ----ELERLAREGAARRYPSGV------PHSVIKRIEEELALIERLNYARYFLTVYDIVK 332

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S+  + + IT++ P R   LFERF++ +R   PD D+DF  +
Sbjct: 333  YARSQDI-LCQGRGSAANSIVCFCIGITEVGPDRIDTLFERFISEERNEPPDIDVDFEHE 391

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            +R+ VI+Y+  KY  +R A      S + ++ALR+V +A+ +       L   I      
Sbjct: 392  KRETVIQYIYEKYSSKRTALAAAVISYRGRSALREVSKAMGLSEDVRASLSGSIWGWSTS 451

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             V  +    ++R      +DP+   ++E + ++ G  RH S H  G VI    L ++VP+
Sbjct: 452  EVGEK----EARAGGLDRSDPTSRHVMERANEIMGFPRHLSQHVGGFVITKDRLDEIVPI 507

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV--------KVD 597
             +    +  + +++   ++   ++K D L L  LT LQ++   L                
Sbjct: 508  VKTAMDERKMVEWDKDDLDAVKILKVDVLALGMLTCLQRAFILLTDHYPKARDPYGQPYV 567

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            L+ +P +D   Y ++    TLG+FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 568  LASLPPEDKRVYDMIGRADTLGVFQIESRAQMSMLPRLKPKDFYDLVIEVAIVRPGPIQG 627

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D +  Y  R+ GKEK     P ++ +L +T GV ++QEQ M+IA +  G+   EAD LRR
Sbjct: 628  DMVHPYLRRRQGKEKPEYQKPELEAILSKTLGVPLFQEQAMKIAIVAGGFRPGEADELRR 687

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AM   K    +   ++R I G    G +K  A   F+ +  F +YGF +SHAA++A++ Y
Sbjct: 688  AMATFKRTGTIGNYRQRMIDGMVGKGYTKDFAERCFKQIEGFGEYGFPESHAASFALLVY 747

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831
             + W KT YP  F AA +  +     +  +  +DAR   + I    VN    D  +    
Sbjct: 748  ASCWFKTFYPDVFCAAILNSQPMGFYQPAQLVRDARDHGVDIREVDVNCSAWDCTLEKVP 807

Query: 832  -------------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                               ++ +      IKG+         +      ++++ D   R 
Sbjct: 808  FDPARILPRHADMRGVIETNHAVRLGFRQIKGLSKERMEDFAKRRGSG-YETVRDVWLR- 865

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
                L+   +E L  A A    G  R   L  +  +             +   +F     
Sbjct: 866  --SGLDVDEIERLAQADAFRSIGLDRRAALWEVRAL-------GAKSAAEKLPLFDQPAL 916

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               +     K           ++ R LG     HP+   +  L + G+       +   G
Sbjct: 917  RLRELEPETKLPKMPLGEHVIHDYRSLGLSLKAHPVAFLRERLDRAGVTPNANLPSQRDG 976

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + +A +V+ +Q+    KG+ I ++T  +        F+
Sbjct: 977  RRVSVAGLVLVRQRPG--KGNAI-FLTLEDDKAVANVIFW 1013


>gi|288940218|ref|YP_003442458.1| DNA polymerase III subunit alpha [Allochromatium vinosum DSM 180]
 gi|288895590|gb|ADC61426.1| DNA polymerase III, alpha subunit [Allochromatium vinosum DSM 180]
          Length = 2069

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/722 (41%), Positives = 438/722 (60%), Gaps = 29/722 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P+FVHL +HS YSL++G + +  ++  +AA   PA+A+TD  NLFS + F + A  AG++
Sbjct: 3   PTFVHLHLHSEYSLVDGLVRIKPLVKTVAAAGMPAVAVTDQGNLFSLVRFYKAAVGAGVK 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PI G  L +   ++                +VLL     GY+ L  L+SR ++  Q    
Sbjct: 63  PIAGADLWVRNPEDANH----------PHRLVLLAQDEPGYRNLTRLISRGFVEGQHLGV 112

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            ++   W+ E   +GLI L+GG  G +  A       +AE+RL  +  +F DR Y+ L R
Sbjct: 113 AQVERDWILEAH-QGLIALSGGPRGDVAEALLKGRDAIAEQRLDAWLSVFEDRYYLELMR 171

Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  +       V LA    +P+VATN+  FL+  D+EAH+  + +     +    RPR
Sbjct: 172 TGRALEGELIESSVDLAIRRGVPVVATNDVRFLAAGDFEAHEARVCIHQGRTLDDPRRPR 231

Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + + YL+  +EM  +F+DLPEALENTVEIA+RC+  L++    LP F   E       
Sbjct: 232 DYSEEQYLRTPAEMAELFADLPEALENTVEIAKRCNLELKLGKNYLPVFPVPEGM----T 287

Query: 307 EENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            ++    ++  GLE RL     + A       + Y +RL+ EL VI +M F GYFLIVAD
Sbjct: 288 TDSFFAEQSRRGLEWRLERILDRDAPDYAERRRVYEERLETELAVIIQMGFPGYFLIVAD 347

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           FIQWAK N IPVGPGRGSGAGS+ AYAL ITD+DP+   LLFERFLNP+R+SMPDFDIDF
Sbjct: 348 FIQWAKDNGIPVGPGRGSGAGSLVAYALKITDLDPIEHELLFERFLNPERVSMPDFDIDF 407

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C + RD VI YV  KYG E V+QIITFG++ AKA +RDVGR +  PY  VD++ K++P +
Sbjct: 408 CMEGRDRVIDYVARKYGREAVSQIITFGTMAAKAVVRDVGRVMGHPYGFVDKIAKMVPFE 467

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               +  +A+ +    + A   D  V  +L++++KLEGL R+A  HA G+VI    L+  
Sbjct: 468 LGMTLE-KALKESEDLKRAYDQDEEVRAILDMARKLEGLTRNAGKHAGGVVIAPTVLTDF 526

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVD 597
            P+Y +      VTQ++   +E+ GL+KFDFLGL+TLT++  +L  +     A+    +D
Sbjct: 527 APLYCEPGGANLVTQYDKDDVEQVGLVKFDFLGLRTLTIIDWALKTINAGRAAKGEPPLD 586

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           +  I   D E + LL    T  +FQLES GM++ ++ +QPDC ++I ALV+L+RPGP+ +
Sbjct: 587 IERIDPRDQEAFDLLKRCETTAVFQLESRGMKELIKKLQPDCFDEITALVALFRPGPLQS 646

Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            +V  +  RK+G+ ++   HP ++P+LK T G+I+YQEQVMQIAQ+L+GYSL  AD+LRR
Sbjct: 647 GMVDDFIERKHGRAEVAYPHPDLEPILKPTYGIILYQEQVMQIAQVLAGYSLGGADILRR 706

Query: 716 AM 717
            +
Sbjct: 707 CL 708



 Score =  290 bits (742), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 92/287 (32%), Positives = 143/287 (49%), Gaps = 16/287 (5%)

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
             + SH+AAYA++SYQT W+K HYP  F+AA ++ +MDN +K+     + R   +++ PP+
Sbjct: 1625 VHNSHSAAYALVSYQTLWLKAHYPAAFMAAVLSADMDNTDKVVTLIDECRTMKLRVDPPA 1684

Query: 821  VNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLN 878
            +N     F + D++   Y L A+KGVG +    ++EA  A   F  L DFC R+D +++N
Sbjct: 1685 INRSDYHFTIADDKTVVYGLGAVKGVGESAIEAMLEARRAGGSFRDLWDFCGRIDLQRVN 1744

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            RRVLESL+ AGALD  G +R  L+  L    K A+     R     ++F   + +     
Sbjct: 1745 RRVLESLIRAGALDELGPNRATLMAHLPLALKAAEQYHSTRAAGQVDLFGALEPSGPPTP 1804

Query: 939  TL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT----- 989
                  E  +      R + E+  LG Y +GHP+D Y+  L+ MG       + T     
Sbjct: 1805 DPQLARETLADWEDEQRLQGEKETLGLYLTGHPIDRYEDELKAMGGARIARLLETDRELG 1864

Query: 990  ----IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                       +  +VV  +  KT++G R+G V   +     EA  F
Sbjct: 1865 RRDRRDREKRTVVGLVVGVRHGKTQRG-RMGSVVLDDRTGRIEATVF 1910



 Score = 47.3 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            MGKK  EEM KQ++ F  GA   GI   ++ ++F L+  F+ YGFNK 
Sbjct: 1141 MGKKKPEEMAKQRDTFEQGALARGIDGQLSSHVFNLIEYFSGYGFNKC 1188


>gi|238028690|ref|YP_002912921.1| error-prone DNA polymerase [Burkholderia glumae BGR1]
 gi|237877884|gb|ACR30217.1| DNA polymerase III, alpha subunit superfamily protein [Burkholderia
            glumae BGR1]
          Length = 1080

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/1055 (25%), Positives = 442/1055 (41%), Gaps = 70/1055 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   +++S L GA S + ++ +  A     IA+TD  +L  A        A   +
Sbjct: 8    PAYAELFCRTNFSFLCGASSADELVARAHALGYRGIAVTDACSLAGAPRMHVAVKAKNAE 67

Query: 69   PIIGCQLDIDMQDN----------------LKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
                 +       +                 +    G  P P    +VLL    EGY  L
Sbjct: 68   LEAAWKAAGAPPADRPEPFRLAVGAYFELTPERVAPGGDPGPGGFGLVLLACNREGYGNL 127

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             EL+S   +    K S  +    L     E   +        I    +   + V + +L 
Sbjct: 128  SELISWRRMA-APKGSYTLTPRMLAAPPPEFAHLRGMPDCFAILVPAYPVRADVLDAQLA 186

Query: 173  TFKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
                 FG+R  + L Q  R  D      +        +PLVA  +            D++
Sbjct: 187  WCAAQFGERARLGLVQLGRSLDGLYRETIEAAGVQRAMPLVALGDVTMHLRSRKPLQDLM 246

Query: 232  MAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
             A+     V +         + +L+    +  +F    EA+  T  +   C F +     
Sbjct: 247  TAIRIGRPVGECGYALAANAEQHLRGLGRIARLFPQ--EAIAETCRMLDACRFDMGTLKY 304

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
              P  I            + L  +   G   R  +G  A      +   ++  EL +IA 
Sbjct: 305  EYPHEIVPAGM----TPTDYLAQETWRGARKRFPEGLPA------EVEAQIRHELALIAE 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M++  +FL V D +++A++ +I +  GRGS A SV  Y L +T +DP R ++LFERF++ 
Sbjct: 355  MEYEPFFLTVYDIVKFAREQDI-LCQGRGSAANSVVCYCLGVTAVDPKRSTMLFERFISR 413

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R   PD D+DF  +RR+EVI+Y+  KYG +R A      + + + ALR+ G+AL +   
Sbjct: 414  ERGEPPDIDVDFEHERREEVIQYIYAKYGKDRTALAAAVSTYRPRGALRETGKALGVDPM 473

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
             V+R+ K           L   A      E     P +    E++ +L G  RH S H+ 
Sbjct: 474  LVERVAKGHRWFDGSADLLARFASVGLDPEV----PLIRAWAELASRLLGFPRHLSQHSG 529

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL- 589
            G VI    L++LVP+     +   V Q++   +E  GL+K D L L  L+ L ++ DF+ 
Sbjct: 530  GFVISRGKLTRLVPIENAAMAGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDFVE 589

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            A RG ++ L+ +   D  TY +++   T+G+FQ+ES      L  ++P C  D++  V+L
Sbjct: 590  AWRGTRMRLADLEEGDEATYAMISRADTVGVFQIESRAQMSMLPRLKPACYYDLVIEVAL 649

Query: 650  YRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             RPGPI       Y  R+ G E +      + P L+ T+GV I+QEQVMQIA + +G++ 
Sbjct: 650  VRPGPIQGGAVHPYLRRRQGLEPVEYPKEDLKPALERTKGVPIFQEQVMQIAIIAAGFTP 709

Query: 708  SEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             EAD LRRAM   K K ++ K +ER + G       +  A  IFE +  F +YGF +SHA
Sbjct: 710  GEADELRRAMAAWKRKGDLGKYRERIVEGMLARDYPERFADQIFEQIKGFGEYGFPESHA 769

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A++A++ Y ++W+K H P  FLAA +  +        +  QDA++  + + P  V     
Sbjct: 770  ASFAILVYASSWLKCHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVRPIDVTASGW 829

Query: 827  D----------FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            D             G   +   +A + G+G   A  I  A A +PF+S++D   R    +
Sbjct: 830  DASLEALPGEPPPAGRPAVRLGMALVAGLGREAALRIEAARAARPFESVDDLARRARLAR 889

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
                 L +            +R             A   +        ++ A        
Sbjct: 890  RELEALAAANAL---AALAGNRR------------AALWQAVAAAPSRDLLAAAPIDEPV 934

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            K  L   S  +  +    + R +G   + HP+ + +  LR   +   EE          R
Sbjct: 935  KPALGAPSEADDIL---ADYRTVGLTLNRHPVALLRDALRARRLCSAEELGRHRNKRLAR 991

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
               +V ++Q   T KG+   +VT  +         
Sbjct: 992  ACGIVTARQMPGTAKGTL--FVTLEDETGCVNVIV 1024


>gi|218532913|ref|YP_002423729.1| DNA polymerase III subunit alpha [Methylobacterium chloromethanicum
            CM4]
 gi|218525216|gb|ACK85801.1| DNA polymerase III, alpha subunit [Methylobacterium chloromethanicum
            CM4]
          Length = 1071

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/1034 (26%), Positives = 447/1034 (43%), Gaps = 70/1034 (6%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             LQV + +S L GA S   +    +    PA+ +TD  +L   +   Q A   G++ ++G
Sbjct: 9    ELQVTTHFSFLRGASSPEELFSAASLLGIPALGVTDHGSLAGMVRAHQAAKVTGMRLVVG 68

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            C+LD+D                    +++  +    Y RL  L+S       GK   R+ 
Sbjct: 69   CRLDLD---------------DLSSPLLVYPTDRAAYGRLCRLLSLGKAKG-GKGRCRLT 112

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RG 191
               L+E       +L     G                 L  FK LFG R    L R  R 
Sbjct: 113  WRDLEEWQEGFFAILLAEQPG-----------SALLNDLARFKGLFGARASCALTRRFRP 161

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250
             D  R   +   A    +P VAT + L+         DV+  +     + +    +    
Sbjct: 162  DDADRLDALAAAARAARVPTVATGDILYHVAGRRRLQDVVTCIRLGLTIDRAGFAKERHA 221

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            D +LK  +E   +F+  PEAL    EIA  C F L   A   P     E  +     +  
Sbjct: 222  DRFLKPPAETARLFARFPEALARAGEIAAACRFSLDDLAYTYPT----ESREDGLSPQER 277

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L     AG   R   G        +   ++L  EL++I R+ ++ YFL V   + +A + 
Sbjct: 278  LDVLTWAGAARRYPAGV------PEAVTRQLHHELDLIGRLAYAPYFLTVESIVAFANRE 331

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I +  GRGS A S   + L IT IDP R +LLFERF++  R   PD D+DF  +RR+EV
Sbjct: 332  KI-LCQGRGSAANSAVCFCLGITSIDPTRQNLLFERFVSEARREPPDIDVDFEHERREEV 390

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+++   YG  R A        +++ ALR+VG+ + +P      + ++  +  +  V   
Sbjct: 391  IQWIFQTYGRHRSALTAIVSRFRSRGALREVGKVMGLPEDVTGAINRMTWSWSSEGVG-- 448

Query: 491  AIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                +   RE  L   D  +   L I+++L G  RH S H  G V+    L +LVP+   
Sbjct: 449  ----ERELRELNLNPDDRRLRLTLAIARELIGTPRHLSQHPGGFVLTLDRLDELVPVEPA 504

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
              +D  V +++   I+    +K D LGL  L  L+++ D LA+ +    DL+ IP  D  
Sbjct: 505  AMADRQVIEWDKDDIDALKFMKVDVLGLGMLGCLRRAFDLLAEVKNDPHDLASIPSKDEP 564

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRK 665
            T+ ++    TLG+FQ+ES      L  M+P    D++  V++ RPGPI  D +  Y  R+
Sbjct: 565  TFAMIRRADTLGVFQIESRAQMAMLPRMKPKEFYDLVIEVAIVRPGPIQGDMVHPYLRRR 624

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEE 724
             G E++    P +  +L++T GV ++QEQ MQ+A + +G+S +EAD LRR+M   K    
Sbjct: 625  EGLEEVTYPTPELKAVLEKTLGVPLFQEQAMQVAMVGAGFSATEADELRRSMATFKFTGG 684

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + + + R + G   NG ++  A   F+ L  F  YGF +SHAA++A+++Y ++WMK H+P
Sbjct: 685  VHRFQNRLVEGMVANGYARDFAERTFKQLEGFGSYGFPESHAASFALLAYASSWMKCHHP 744

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-------NRIYY 837
              F AA +  +        +  +DAR   ++I P  VN    D  +           +  
Sbjct: 745  DVFCAALLNAQPMGFYAPAQIVRDARAHGVEIRPLDVNFSQWDCTLESLGSGRKLFAVRL 804

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L    G+       ++ A   +PF SL +   R     +    L  LV A A    G +
Sbjct: 805  GLRLASGLAERDGHRLVAARGGRPFASLPELADRA---GIPAASLTCLVRADAFRSLGLN 861

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R +   ++  ++     +    +     I A    T    ++L   S     V    +  
Sbjct: 862  RREAAWAVKALRPDPLPLFAALSA---PIQAEPAQTAEPAVSLPAMSAGGEVV---ADYC 915

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G     HPL   +  L  +G +          G  I +A +V+ +Q+  + KG+   +
Sbjct: 916  ANGLSLRAHPLAFLRETLTTLGARPCAALERVGNGGAIVVAGIVLMRQRPGSAKGTM--F 973

Query: 1018 VTFSEPAKEYEANF 1031
            +T  +         
Sbjct: 974  MTLEDETGIANLIV 987


>gi|329946827|ref|ZP_08294239.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 170
            str. F0386]
 gi|328526638|gb|EGF53651.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 170
            str. F0386]
          Length = 1265

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/1132 (25%), Positives = 469/1132 (41%), Gaps = 142/1132 (12%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            L   +     +  L  HS+YS L+GA   +++          A+A+TD N +   ++ +Q
Sbjct: 122  LRTVMTNRHRYAELHAHSTYSFLDGANEPDDLASAAIELGLEALALTDHNGVPGIVKHAQ 181

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
               A G+  + G +L +                     + +L     GY  L+  +S+  
Sbjct: 182  AGRAHGLPTVHGTELTLADGS----------------HLPVLARNPAGYHLLVSAISQHN 225

Query: 121  LLDQGKQSVRICLSWLQEI-------GTEG----LIMLTGGSSGPIDRA----FFFNSSQ 165
            L    ++     L  L           T G     ++LTG  +GP+ RA        +  
Sbjct: 226  LDAGERRDPAHDLPTLASALRAVPTSHTGGTSGTCLILTGTVNGPLRRALGDPHRPGTWD 285

Query: 166  VAEK--RLLTFKKLF--GDR----------------------------LYVNLQRHRGYD 193
            +A     L    +LF   DR                            L V L    G  
Sbjct: 286  LAAADTCLGHLAELFAAPDRGRPVGSSATAHTTHVEGGGHVEGDAAVGLAVELTLDGGPT 345

Query: 194  RYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
                ++++ +LA+ H LPLVAT         D    DVL A    T +            
Sbjct: 346  DAALTKILARLAHAHRLPLVATGAVRCARPTDARLADVLTATRLVTDLEGARGHLPAIGR 405

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +L+   +M  +    P+A++   ++A   +F L + AP LP     E           LR
Sbjct: 406  WLRGAQDMARLHRRSPDAVDLAADLASDLAFDLSLIAPDLPDADVPEG----YTPTTWLR 461

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                 G       G   +   A +    L+ EL+VI  + F GYFLIV   +++ +++ I
Sbjct: 462  ELTRQGATRHY--GTPQEHPRAWEV---LNHELDVIESLGFPGYFLIVHSIVEFCRQSGI 516

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             +  GRGS A S   YAL IT +D +R  +LFERFL+P+R   PD D+D    RR+EVI+
Sbjct: 517  -LCQGRGSAANSAVCYALGITAVDAVRHKMLFERFLSPERGGYPDIDLDIEACRREEVIQ 575

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            +V ++YG +  AQ+    S + ++A+RD  RAL  P    D   K +  D    V    +
Sbjct: 576  HVYSRYGRDCAAQVANVISYRPRSAVRDAARALGHPAGVQDAWAKEM--DRWATVRPGGL 633

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                       +D     +L++++KL  L RH   H  G+V+  RP++++ P+      +
Sbjct: 634  T--------GRSDEVPAPVLDVAEKLLRLPRHLGVHPGGMVLCGRPVTEVCPVRWATMDN 685

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------------------GV 594
              V Q++     +AGL+KFD LGL +LT L+ +   LA+R                  G 
Sbjct: 686  RSVLQWDKDDCAEAGLVKFDLLGLGSLTALRLAFATLAERGQTVPDAVEEGELRTSQTGR 745

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               L  +P +D   Y LLT   T+G+FQ+ES      L  ++P    DI+  V+L RPGP
Sbjct: 746  PWGLHTLPEEDPAVYRLLTAADTVGVFQVESRAQMATLPRLRPKEFYDIVVEVALIRPGP 805

Query: 655  IDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            I    +  Y  R+  +E++  +H  + P L  T GV ++QEQ+MQIA   +G+S +EAD 
Sbjct: 806  IQGDAVNPYIRRRLKREQVTYLHDSLKPALARTLGVPLFQEQLMQIAVDAAGFSPAEADT 865

Query: 713  LRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LR+AM  K+  E MD    R ++G    GI +  A  I+  L  FA++GF +SHA ++A 
Sbjct: 866  LRQAMGAKRSIERMDALHGRLVAGMKAQGIDEPTAEKIYSKLRSFAEFGFPESHAFSFAY 925

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            + Y +AW+K   P +F A  +  +       +    DAR+  ++++P  VN       V 
Sbjct: 926  LVYASAWLKARKPEDFYAGVLAAQPMGFWSPQSLVADARRHGVRVLPADVNRSLAQATVE 985

Query: 832  DN-------------------------------RIYYSLAAIKGVGTTTARHIMEAS-AD 859
                                              +   LA IKG+G   A+ I+    A 
Sbjct: 986  QREDRREANRSDQWEPLVPHPAVPSSLDVHDDLAVRLGLAPIKGLGERLAQAIVTERCAH 1045

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             P+  L D   RV     +R  LE+L  +GALD  G  R + L +   +      +    
Sbjct: 1046 GPYQDLTDLARRVSL---SRSRLEALAASGALDSLGVERRRALWAAGVLSDEHGQIRGAS 1102

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
              +    F       +         +     R   +  + G    G PL   +P L   G
Sbjct: 1103 RREQGAWFQPTLAGTAVGAIAPPLPIMTGRERQAADLNLTGVSTQGSPLTSLRPGLAADG 1162

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +    +      GN +R+A +V  +Q+  T  G  + ++   +         
Sbjct: 1163 VLTAADLSGQEHGNRVRVAGVVTHRQRPHTASG--MIFLNLEDETGLLNVAC 1212


>gi|300697395|ref|YP_003748056.1| DNA polymerase III subunit alpha [Ralstonia solanacearum CFBP2957]
 gi|299074119|emb|CBJ53663.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum CFBP2957]
          Length = 1081

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/1058 (25%), Positives = 452/1058 (42%), Gaps = 81/1058 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA   + ++ +  A    A+A+TD  ++   +     A  AG++
Sbjct: 18   PDYAELHCISNFTFLTGASHPHELVARAKALGYRALALTDECSVAGTVRAHVAAKEAGLK 77

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+             + +    P+     +VLL    +GY  L E +++  L    K  
Sbjct: 78   LIV--------GSRFTVRDAQGEPW---LRLVLLAQDIDGYGNLCECITQARLA-APKGD 125

Query: 129  VRICLSWLQEIGTEGLIMLTGGS-SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             R+           GL  L G      I    +    Q    + L  +++FGDRL + L+
Sbjct: 126  YRLLADD-LAAPAAGLAHLRGMRHCLAILLPDYDPDPQRLRAQALWCRQVFGDRLSMALE 184

Query: 188  -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
               R  D      V  +A   ++PLVAT +    S +    HDVL A+  S  +++    
Sbjct: 185  LPLRHADDRHRGTVAAVAEQADVPLVATGDVAMHSRQRKPLHDVLTAIRLSRPIAECGLE 244

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPE----ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
               + +  ++ R  M   F    E     L  +VE+A  C F L       P  +  E  
Sbjct: 245  LAPSAEQAMRTR--MQLAFFYQGERGAPLLRRSVELAALCDFSLDEIEYEYPHEVVPEG- 301

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               +     L  + +AG   R  +   AK       + ++  EL +IA +++  +FL V 
Sbjct: 302  ---QTPAAYLHAEVMAGAARRYGKAIPAK------VQAQIAEELALIAELRYEPFFLTVY 352

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +++A+  +I +  GRGS A S   Y L IT++DP   + LF RFL+  R   PD D+D
Sbjct: 353  DVVRFARSRSI-LCQGRGSAANSAVCYCLGITEVDPQSGNTLFARFLSRARNEPPDIDVD 411

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F   RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL +    ++++ K    
Sbjct: 412  FEHQRREEVIQYIYGKYGLTRTALAAALITYRTRSALRDVGRALGIDLGVIEQVAKAQAW 471

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                     A A  +  +      P V R   +  +L G  RH S H  G VI    LS+
Sbjct: 472  WDGQ----HAFAQHAGQQGLDPESPLVQRWAGLVGQLRGFPRHLSQHVGGFVIAQGKLSR 527

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------AQRGVK 595
            LVP+      D  V Q++   +E   L+K D L L  LT ++++LD L        R   
Sbjct: 528  LVPIENAAMQDRRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMLDALPGRRARYGA 587

Query: 596  VD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             D   +  +P +D +TY ++    T+G+FQ+ES   +  L  ++P    D++  V++ RP
Sbjct: 588  SDKLAMQHLPDEDRDTYDMIGRAETIGVFQIESRAQQSMLPRLRPRTYYDLVIQVAIVRP 647

Query: 653  GPIDNIV--VYNNRKN-----GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GPI   +   Y  R+        + +    P +  +L+ T GV I+QEQVM+IA    G+
Sbjct: 648  GPIQGGMVHPYLQRREAMRNGNPDCVTYPGPEVRAVLERTLGVPIFQEQVMEIAMKAGGF 707

Query: 706  SLSEADVLRRAMGK-KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNK 763
            +  EAD LRR M   K K  + + +ER +    +           +   +  FA+YGF +
Sbjct: 708  TADEADRLRRDMAAWKRKGNLTEHQERLMKEMVEVRHYDPAFVEALCRQMEGFAEYGFPE 767

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAA +A ++Y ++++K H P  F AA +  +        +  Q+AR+  ++++P  V  
Sbjct: 768  SHAAGFAKLAYVSSYLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSRVRVLPADVTA 827

Query: 824  PCVDFKV--------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
               D  +        G   I   L+ I+G+    A  I+ A A  PF S+ED   R    
Sbjct: 828  SAWDSTLHERPHGAGGQPDIRLGLSRIRGMRQPAAERIVAARAQAPFASVEDLAHRAALD 887

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            + +  VL +          G+ R  L Q+L             +    ++    +     
Sbjct: 888  RHDLSVLAAANALLP--LAGHRRQALWQTLAL-----------QEPGQDHALLRQARPVE 934

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
              + L   S+    V    +   LG     HPL + +P L +M             G   
Sbjct: 935  VPLALPAPSLGEEVV---ADYGSLGLSLQSHPLSLLRPRLERMRFVTAATLAGYRNGQLA 991

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            R   +V  +Q+  T KG+   +V+  +         +P
Sbjct: 992  RACGIVTVRQRPGTAKGT--IFVSIEDETGVVNVVLWP 1027


>gi|299532169|ref|ZP_07045563.1| DNA polymerase III, alpha subunit [Comamonas testosteroni S44]
 gi|298719831|gb|EFI60794.1| DNA polymerase III, alpha subunit [Comamonas testosteroni S44]
          Length = 1136

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/1084 (24%), Positives = 446/1084 (41%), Gaps = 112/1084 (10%)

Query: 3    QYLEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            Q +++ P ++  L   S +S L GA S   ++ +  +    A+A+TD  ++  A+   + 
Sbjct: 31   QGMDRGPLAYAELHCLSHFSFLRGASSPAELVHRAKSLGYAALALTDECSVAGAVRAHEA 90

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A  + +  I G +                        IV+LV   +G+  L E ++    
Sbjct: 91   ARDSDLHLIHGSEFAWGP-----------------LRIVVLVRDLQGWGNLCEFITVARS 133

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE--KRLLTFKKLFG 179
                         +L +  +   ++  G     + +    ++S +      L      F 
Sbjct: 134  RAAKG-------EYLVDESSPWQLLQQGCECLLLPQREQLDASDLIAVTACLENVAAHFS 186

Query: 180  DR-LYVNLQRHRGYDRYRESQVVQLA-YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
               L++ ++ H   D     Q +Q A     LPL+A  +    +       DV+ A+   
Sbjct: 187  TNILWLGVELHLAPDDSLWLQTLQQAGVVLGLPLLACGDVHMHARSRKPLQDVVTAIRLG 246

Query: 238  TVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V++     +   + +L++R  + S++  +   LE T+E+A RCSF L       P+  
Sbjct: 247  RTVAECGFALQPNAERHLRSRLRLASLYPRV--MLEATLELAGRCSFSLDEIRYHYPQES 304

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                    +     L      G   R  QG        +D   +L  EL +I   K+  Y
Sbjct: 305  VLPGMTATQT----LAWLTWDGAAGRYPQGI------PEDVHDQLHKELALIEDQKYEMY 354

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D +++A+   I +  GRGS A S   Y L IT +DP   +LLFERF++ +R   P
Sbjct: 355  FLTVHDIVRYARSVGI-LCQGRGSAANSAVCYCLGITAVDPENNNLLFERFISKERSEPP 413

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF   RR+EVI+Y+  KYG +R A        ++++ALRDVG+ L +P   +D L 
Sbjct: 414  DIDVDFEHARREEVIQYIYGKYGRDRAALTAVVSCWRSRSALRDVGKVLGLPADLIDALA 473

Query: 477  KLIPNDPAH----PVSLQAIADDSRFREARLADPS------------------------- 507
            K       H      +    AD +   +A  A P                          
Sbjct: 474  KGQYWFSEHAQAQAQTHAEAADSAEEDQAPEALPEDWVQRKLQEAEVLASEMNCAVGAHR 533

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            +   +E++ +L    RH S H  G V+ +  L++LVP+     +   V Q++   ++  G
Sbjct: 534  LRLWIELAWQLRDSPRHLSQHVGGFVLTEGKLTRLVPVEPATMAKRSVIQWDKDDLDVVG 593

Query: 568  LIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K D L L  LT+L+ +L +    RG    L  IP +D  TY ++    T+G FQ+ES 
Sbjct: 594  LLKVDVLALGMLTMLRNALNERARWRGEPWGLHQIPQEDAATYEMICQADTVGTFQIESR 653

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-----NRKNGKEKIVSIHPLIDPM 681
                 L  +QP    D++  V++ RPGPI   +V+       R   K  +    P +   
Sbjct: 654  AQMSMLPRLQPRTFYDLVVEVAIVRPGPIQGGMVHPYLLARERARRKLPLKLEKPELANA 713

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNG 740
            LK T GV I+QEQVMQIA   + +S  +AD LRR+M   K K  + K +   I G    G
Sbjct: 714  LKRTLGVPIFQEQVMQIAMDAAKFSAGKADELRRSMAAWKRKGGVHKFERPLIDGMVARG 773

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
                 A  IF  +  F +YGF +SHA ++A+++Y +AW+K H P  FL A +  +     
Sbjct: 774  YKLEFAQAIFAQMLGFGEYGFPESHAYSFALLAYASAWLKRHEPAIFLQALLNAQPMGFY 833

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------------DNRIYYSLAAIKGVGTT 848
               +  QDAR+  ++++P  V        +                +   L  +  +G  
Sbjct: 834  SPSQLVQDARRHGVRVLPVDVCHSHWHCTLEAPLQAMRGVAQPQPAVRLGLNRVARLGKA 893

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I   +A  P+  + D   R      ++  +E+L  A AL      R Q +      
Sbjct: 894  AALRIEGEAAQAPWKDVSDLAMRARL---DKADMEALAAADALRSLAGHRRQQMWD---- 946

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                             IFA +       + L + +     +    +    G     HPL
Sbjct: 947  --------AAAQASLPPIFA-QAAIHEPGLELPQAAEGEEIM---FDYAATGLSLRRHPL 994

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             + +P L + G+K   E    + G  +R   +V  +Q+  T  G+   ++T  +      
Sbjct: 995  ALLRPRLARHGLKTAAELRHMLPGQKVRACGIVTVRQRPPTANGTL--FITLEDETGVIN 1052

Query: 1029 ANFF 1032
               +
Sbjct: 1053 LVVW 1056


>gi|89900021|ref|YP_522492.1| DNA polymerase III subunit alpha [Rhodoferax ferrireducens T118]
 gi|89344758|gb|ABD68961.1| DNA polymerase III, alpha subunit [Rhodoferax ferrireducens T118]
          Length = 1084

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/1059 (26%), Positives = 463/1059 (43%), Gaps = 80/1059 (7%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
               P++  L   S++S   GA     ++ + AA    A+A+TD  ++   +    +A   
Sbjct: 15   ASVPAYCELHCLSNFSFGRGASHPEELVARAAALGYAALALTDECSVAGVVRAHTEAKKL 74

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G++ + G +  +      +    G         +V L    + +  L E +++       
Sbjct: 75   GLKLLPGAEFAVT-----QADGAGGGALEAGFRLVALPHDLQAWGDLCEFITQARRA-AP 128

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            K   R+           G  +L G  S            + A       + LFG  L++ 
Sbjct: 129  KGQYRLLWQDAPWALLGGCEVLLGLPSAL--------HFEAACAITTRARALFGSNLWLL 180

Query: 186  LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            ++     D   +  ++ QLA    +PLVA  N            DVL AV     V    
Sbjct: 181  VELLLAPDDTLQGQRLQQLARLTGVPLVAAGNVHMHVRSRKPLQDVLSAVRLGQPVFDCG 240

Query: 245  RP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R  +   + +L++R  + +I+S  P+ L NT+ +A RC+F L       P     E    
Sbjct: 241  RALQPNAEAHLRSRQRLAAIYS--PDVLANTLTVAARCTFSLDELRYQYPLETVLEGLSA 298

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +     LR  A  G   R  QG  A        +Q+LD EL +I  + F  YFL V D 
Sbjct: 299  AQT----LRRYAAEGALNRYPQGTPA------SVQQQLDHELALITELHFEMYFLTVHDI 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+  +I +  GRGS A S   Y L +T++DP R ++LFERF++ +R   PD D+DF 
Sbjct: 349  VRFARSRHI-LCQGRGSAANSAVCYCLGVTEVDPSRMNMLFERFISRERNEPPDIDVDFE 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR+EVI+Y+  KYG ER A      S + ++ALRDVGRAL +P + +  L K  P   
Sbjct: 408  HQRREEVIQYIYAKYGRERAALSAVVISYRPRSALRDVGRALAVPEALISALAKEHPGMY 467

Query: 484  AHPVSLQAIADDSRFREARLADPS--VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +  V ++ +        A +A P+  +   L++S +L+   RH S H  G V+    L++
Sbjct: 468  SRTVLVERLQSALALLAADVAPPAECLQLWLDLSTQLQRFPRHLSQHPGGFVLTRGKLTR 527

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSL 600
            LVP+      +  + Q++   ++  GL+K D L L  L+ +++ LD ++ QRG    +  
Sbjct: 528  LVPVENAAMPERSIIQWDKDDLDAMGLLKVDVLALGMLSAIRRCLDLISVQRGTPFSMQD 587

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV- 659
            IP +D  TY ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI   + 
Sbjct: 588  IPPEDLATYDMICQADTVGVFQIESRAQMSMLPRLKPRCFYDLVVEVAIVRPGPIQGGMV 647

Query: 660  -VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y   +   E++    P +  +LK T GV I+QEQVMQIA   + +S  E+D LRR+M 
Sbjct: 648  HPYLKAREHPEQVPYPSPALQEVLKRTLGVPIFQEQVMQIAMAAADFSAGESDSLRRSMA 707

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K +  + K  +R + G  KNG S   A  IF+ +  F +YGF +SHAA++A++ Y ++
Sbjct: 708  AWKRQGGVHKFYDRLVGGMLKNGYSLEFAEQIFKQIEGFGEYGFPESHAASFALLVYVSS 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K H P  FLAA +  +        +  QDA++  + + P  V     D  +   +   
Sbjct: 768  WLKRHQPACFLAALLNSQPLGFYSPSQLVQDAQRHGVGVRPVDVTRSDWDCTLEPAKSTK 827

Query: 836  ----------------------YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                                     L  + G+  + A+ I+ A  + PF S ED   R  
Sbjct: 828  LLGSDPNSGAAQLPDVCRSPFVRLGLRQVSGLSESAAQRIVAARVEAPFTSTEDLALRCA 887

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             +  + + L S     +    G+ R Q+                      +N     +  
Sbjct: 888  LEAGDLKALASADALAS--LSGHRRQQVWD----------------AAAQQNAPGLLRAV 929

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
               +  L +    +       +   LG     HPL + +  L KM +    +      G 
Sbjct: 930  PVAEAAL-QLPAASEGEEVIFDYAALGLTLRSHPLLLLREQLSKMRLMTAAQLRDLPNGR 988

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              R   +V  +QQ +T KG  + +VT  +   +     +
Sbjct: 989  LARACGIVTMRQQPQTAKG--VIFVTLEDETGQVNVIVW 1025


>gi|332107597|gb|EGJ08821.1| DNA polymerase III subunit alpha [Rubrivivax benzoatilyticus JA2]
          Length = 1057

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/1047 (26%), Positives = 446/1047 (42%), Gaps = 71/1047 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     ++ +       A+AITD  +L   +    +A   G++
Sbjct: 6    PPYAELHCRSNFSFLVGASHPEELVARAHVLGYAALAITDEGSLAGVVRAHAEAERLGLK 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ 127
             I+G ++ +            +TP    P +VLL  T  GY  L   ++       +G+ 
Sbjct: 66   LIVGAEMRLAPPP--------ETPDADEPRLVLLAQTRRGYGNLAHWITVARRRAAKGEY 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR---LYV 184
                            L  L G  +  +  A      +         K  FG     + +
Sbjct: 118  LAWRSDLEGAVPTAPFLAGLPGCIALLLPDA--AQPLETVFAHASWLKTWFGPERAAVAL 175

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             L  H G D      V ++A    LP+VA    L  +       DVL A      V++  
Sbjct: 176  ELLHHAG-DADLVDTVTRVAAQAGLPVVAAGGVLMHTRSRKPLLDVLAATRLKRPVAECG 234

Query: 245  RP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                   + +L+ R+ + +++   PE L  T+ +A RCSF L       PR I       
Sbjct: 235  FDLEPNAEAHLRPRARLAALYR--PEWLAATLAVAERCSFTLAELKYEYPREIVPAG--- 289

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                 + LR    +G   R   G  A        R +++ EL +IAR+ +  YFL VAD 
Sbjct: 290  -HTPTSWLRELTESGARRRFPAGVPA------AVRAQIEHELALIARLGYEPYFLTVADI 342

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + WA+  +I +  GRGS A S   Y L +T +DP + +LLFERF++ +R   PD DIDF 
Sbjct: 343  VHWARDQDI-LCQGRGSAANSAVCYCLEVTAVDPSKSTLLFERFISEERNEPPDIDIDFE 401

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR+EVI+YV  +YG  R A      S + ++ALRDVGRAL +   +++ + +      
Sbjct: 402  HQRREEVIQYVYQRYGRHRAALTAVVISYRPRSALRDVGRALGLDLDRIESVARGQQWFD 461

Query: 484  AHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
               +      D  R RE  L  A P     +E++++L G  RH S H  G VI    LSQ
Sbjct: 462  GRRI------DPERLREQGLDPAAPLCRLWVELTEQLIGFPRHLSQHPGGFVIARDELSQ 515

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600
            LVP+      D  V Q++   ++  GL+K D L L  L+ ++++LDF+ A+RG  + L  
Sbjct: 516  LVPVENAAMEDRSVVQWDKDDLDALGLMKVDLLALGMLSAIRRALDFVGAKRGAPLALHQ 575

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV- 659
            IP D+   Y +L+   ++G+FQ+ES      L  ++P+   D++  V++ RPGPI   + 
Sbjct: 576  IPQDEKPVYDMLSAGDSIGVFQVESRAQMSMLPRLRPEKFYDLVIEVAIVRPGPIQGGMV 635

Query: 660  -VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R+ G+E +      +   L+ T GV I+QEQVMQ+A L + ++  EAD LRRAM 
Sbjct: 636  HPYLKRRCGEEPVDYPSAEVKQALERTLGVPIFQEQVMQLAILAADFTPGEADRLRRAMA 695

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K K  +    ER +      G +   A  IF+ +  F +YGF +SHAA++A + Y +A
Sbjct: 696  AWKRKGGLGPFHERLVGRMVAKGYTAEFAERIFKQIEGFGEYGFPESHAASFAQLVYASA 755

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------- 830
            W+K H+P  FLAA +           +  +DAR+  + + P  V     +  +       
Sbjct: 756  WLKRHHPDAFLAALLNSLPMGFYAPAQLVRDAREHGVVVRPVDVFRSDWETTLEDEAAAP 815

Query: 831  ----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                G   +    + + G     A  ++ A A                   +   L    
Sbjct: 816  GAPPGLRAVRLGFSRVTGFPQDAAGRLVAARA-------------AGGAFASAEDLARRA 862

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
                 +    +    L +L   +  A W       +   +    + T  D I L      
Sbjct: 863  RLDRRELALLADAGALAALAGHRHQAAWAVAGIDARATPLLQATR-THEDTIALPAPGAA 921

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
             S +    + R  G     HPL + +  L    ++          G   R + +V  +Q+
Sbjct: 922  ESVL---ADYRATGLSLERHPLALLREQLAACRVQPAAVLRDYPSGRLARASGLVTHRQR 978

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              T KG  + +VT  +         +P
Sbjct: 979  PGTAKG--VVFVTLEDETGSVNVIVWP 1003


>gi|126660124|ref|ZP_01731243.1| DNA polymerase III subunit alpha [Cyanothece sp. CCY0110]
 gi|126618567|gb|EAZ89317.1| DNA polymerase III subunit alpha [Cyanothece sp. CCY0110]
          Length = 873

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/811 (38%), Positives = 466/811 (57%), Gaps = 62/811 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  LN ++D+    + PAIA+TD   ++ A+E  +     G++P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLNALIDRALELEMPAIALTDHGVMYGAIELIKVCRNKGVKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +   D  +               V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62  IIGNEMYVINGDIEEKK------KYKKYHQVVLAKNTQGYKNLVKLTTISHLNGMQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L+E   EGLI+ +    G I +       + A+     ++K+F D  Y+ 
Sbjct: 116 FARPCINKELLEEYH-EGLIVTSACLGGEIPQRILAGDIKEAKAIAKWYQKIFKDDFYLE 174

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR     + ++A    + +VATN+S F+S  D EAHD L+ +  + +++ + 
Sbjct: 175 IQDHGSVEDRIVNVAIAKIARDLGIKIVATNDSHFISCYDVEAHDALLCIQTAKLITDEK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           R R +   YLK+  EM  +F D      + EA+ NT+E+A +      +  P +P +   
Sbjct: 235 RLRYSGTEYLKSADEMRLLFRDHLPDDVIEEAINNTLEVAEKIEPYKILGEPRIPNYPVP 294

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                    ++ +   A  GL  RL     ++     DYR+RL++EL ++ RM FS YFL
Sbjct: 295 AG----HNPDSYVEEIAWQGLLERLK--CRSRSEIPDDYRERLEYELKMLQRMGFSTYFL 348

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           +V D+I++A+ N IPVGPGRGS AGS+ AY L IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 349 VVWDYIKYARDNRIPVGPGRGSAAGSLVAYCLKITNIDPVHHGLLFERFLNPERKSMPDV 408

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D DFC +RRDE+I+YV  KYG   VAQIITF  + +KA L+DV R L +PY++ D++ K+
Sbjct: 409 DTDFCIERRDEMIKYVTRKYGEANVAQIITFNRMTSKAVLKDVARVLDIPYAESDKMTKM 468

Query: 479 IPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           IP     P  L+ +  +      F+E    DP V R ++++ ++EG  +    HAAG+VI
Sbjct: 469 IPVSRGKPTKLKVMVSNETPTPEFKERYENDPLVRRWVDMAIRIEGTNKTFGVHAAGVVI 528

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
              PL Q+VP+ ++      +TQ+ M+ +E  GL+K DFLGL+ LT +Q++ D + Q   
Sbjct: 529 SSEPLDQVVPLQKN-NDGAVITQYYMEDLESLGLLKMDFLGLRNLTTIQRTADLIKQNQG 587

Query: 595 KV-DLSLIPFDDHE-------------------TYHLLTTKGTLGIFQLESSGMRQALEG 634
              DL  +P D+ +                   T+ LL      GIFQLESSGM+Q ++ 
Sbjct: 588 FELDLDQLPLDERKALEIIAKGTAKKLPPDVERTHKLLEKGDLEGIFQLESSGMKQIVKD 647

Query: 635 MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           ++P  IEDI ++++LYRPGP+D   I  + NRK+G+E+I+  H L++P+LKET  V++YQ
Sbjct: 648 LKPSGIEDISSILALYRPGPLDAGLIPKFINRKHGREEIIYQHKLLEPILKETYAVLVYQ 707

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQ+M++AQ L+GYSL EAD+LRRAMGKK   EM K +E FI GA+KNG+S+ IA ++FE 
Sbjct: 708 EQIMKMAQDLAGYSLGEADLLRRAMGKKKIAEMTKHREIFIDGATKNGVSQAIAEDLFEQ 767

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           + KFA+Y            +SY T  +   Y
Sbjct: 768 MIKFAEYC-----------LSYDTEILTVEY 787


>gi|254465509|ref|ZP_05078920.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacterales bacterium Y4I]
 gi|206686417|gb|EDZ46899.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacterales bacterium Y4I]
          Length = 1127

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/1068 (25%), Positives = 446/1068 (41%), Gaps = 87/1068 (8%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            LT  +++   +  L V ++++ L GA     ++ + A     AIAITD N+L   +    
Sbjct: 19   LTTRMQRQ-DYAELCVTTNFTFLTGASHPEELVVRAAELGLSAIAITDYNSLAGVVRAWS 77

Query: 61   KACAA------GIQPIIGCQLDIDMQDNLKMTNQGKTPF----------------PTVPS 98
                       G+Q     +LD   +  +  +++   P                  +   
Sbjct: 78   ALKQLKRETQDGVQIRSQYRLDSSSRQEIGHSHRIAKPDSVMLPKLIVGCRLVVQDSSVD 137

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
             + L      Y+RL  L++         Q +      L       LI L           
Sbjct: 138  WITLPRDRAAYKRLTRLLTLGKRRADKGQCILYAKDMLPVCKGMTLIALP---------- 187

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNS 217
                    +   +   ++ F   +++     + G D+   S   ++A+    P+VA  + 
Sbjct: 188  --RGRLDESVPDIQALRRHFPGHVFLGAAPRYDGSDQAYLSACAEIAHRTSAPMVAVGDV 245

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
            L       +  DVL  +     + Q   R     +  LK  ++M  +F + P AL  T+E
Sbjct: 246  LMHRASRRQLADVLTCMREHITIDQIGTRALPNSERRLKPGADMARLFRNHPAALRRTLE 305

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            IA +CSF L   +   P       D   +  +  L   A  GL+ R   GA  +      
Sbjct: 306  IADKCSFDLGELSYEYPH-----EDTADETPQMRLERLAHEGLKHRYPDGAPDRA----- 355

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
              Q +  EL+V+  + F  YFL V D +Q+AK   I +  GRGS A S+  Y L ITD+ 
Sbjct: 356  -LQLMAKELDVVRELNFPAYFLTVHDIVQFAKSQGI-LCQGRGSAANSILCYLLGITDVS 413

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            P   +++FERF++  R   PD D+DF  +RR+EVI+++  KYG  R     T    + +A
Sbjct: 414  PDMIAMVFERFVSKHRGEPPDIDVDFEHERREEVIQWIYRKYGRHRAGLCATVIHFRTRA 473

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A+R+VG+ + +       L   I       V L       R RE  L DP   RL++  +
Sbjct: 474  AIREVGKVMGLSQDVTAGLSSQIWGMTNGGVDLD------RVRELGL-DPKDRRLMQTIR 526

Query: 517  ---KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
               ++ G  RH S H  G VI    L +L P+      D  V  ++   I+  G++K D 
Sbjct: 527  LIGEIIGFPRHLSQHVGGFVITRGRLDELAPIENASMEDRTVICWDKDDIDALGILKVDV 586

Query: 574  LGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL  L+ ++K+   +     +   ++ +P  D  TY +L     +G+FQ+ES      L
Sbjct: 587  LGLGMLSCIRKAFALMQSHENITHSIASVPQGDKATYDMLCRADAIGVFQVESRAQMNFL 646

Query: 633  EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
              M+P    D++  V++ RPGPI  D +  Y  R+NG+E I    P +  + + T GV +
Sbjct: 647  PRMRPREFYDLVIEVAIVRPGPIQGDMVQPYIRRRNGQENIEPFGPALQEVTRRTLGVPL 706

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +QEQ MQIA + +G+S  EAD LRR++   +    + K +++FI+G  KNG S  +A   
Sbjct: 707  FQEQAMQIAVVGAGFSAEEADHLRRSLASFRRMGTIGKYRDKFIAGMLKNGYSPDVAERC 766

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            F  +  FADYGF +SHAAA+A+++Y +AW+K H+P  F  A +  +        +  +D 
Sbjct: 767  FGQIEGFADYGFPESHAAAFAMLAYVSAWLKCHHPAIFGCALLNSQPMGFYAPAQIVRDV 826

Query: 810  RQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            R+  ++  P  VN    D  +     G   +      IKG     A  I+ A  +  +  
Sbjct: 827  REHGVETRPVCVNKSTWDNTLERRPDGALALRLGFRQIKGFKEEDANWIVAARGNG-YPD 885

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
             +    R   +     VL  L  A A    G +R   L  +  I          ++ +  
Sbjct: 886  PQALWLRAGIR---PAVLTRLAEADAFADTGLTRRDALWHVKAI----------QSPEPL 932

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
             +F         K         N       +          HP+++ +P L   G+  + 
Sbjct: 933  PLFNDPIDGEIIKEPAVHLPDMNLGEEVVEDYVSTRLTLRAHPMELLRPALP--GLVTHA 990

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   G    +  +V+++Q+  T  G  + ++T  +         +
Sbjct: 991  SLQDIPLGRY-SVCGLVITRQRPGTASG--VIFLTLEDETGVSNVVVW 1035


>gi|88856604|ref|ZP_01131261.1| DNA polymerase III subunit alpha [marine actinobacterium PHSC20C1]
 gi|88814258|gb|EAR24123.1| DNA polymerase III subunit alpha [marine actinobacterium PHSC20C1]
          Length = 1148

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/1084 (26%), Positives = 469/1084 (43%), Gaps = 112/1084 (10%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            ++  +  L  HSS+S L+GA     + ++ A     A+A+TD + L+  +  ++ A   G
Sbjct: 64   ETVPYAELHAHSSFSFLDGASMPEKMAEEAARLGLSALALTDHDGLYGIVRMAEAAAELG 123

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +  + G +L + +        Q     P    +++L    EGY RL   ++R  L    K
Sbjct: 124  LPTLFGAELSLGL-----TGPQAGNADPEGDHLLVLARKEEGYHRLALAITRAQLRGGEK 178

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ----------VAEKRLLTFKK 176
                  L+ L E+      +LTG   G + RA    S             A   L    +
Sbjct: 179  GRPHYELNELAELAGGHWFVLTGCRKGRVRRA-LNGSLPNSAPTSETMLAAGHELDRLSE 237

Query: 177  LF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            LF  + + V L  H    D      +  LA    L +VAT+N+ + +   +  H  + AV
Sbjct: 238  LFGSEAVIVELFDHGYPLDSAYNDALYSLAEERGLRVVATSNAHYATPRQHHLHSAISAV 297

Query: 235  AHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
                 + + D         +L++ +EM + F+  P A+  TVEIA   +F L+   P LP
Sbjct: 298  RARRSLDEMDGWLPAAGTAHLRSGAEMATRFARYPGAVATTVEIAHEAAFELRQAKPALP 357

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
                 E         + LR    AG++ R  +        ++  R R+  EL+VI    F
Sbjct: 358  DQDVPEG----HTPASWLRELTWAGVKDRSIE-------LSEQNRARIQRELDVIEEKHF 406

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
            +GYFLIV D + +A+   I +  GRGS A SV  Y L IT +DPLR+ L FERF++  R 
Sbjct: 407  AGYFLIVHDIVSFARGRGI-LCQGRGSAASSVVCYLLKITAVDPLRYKLPFERFISAMRE 465

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D+DF  +RR+EVI+YV  +YG E  AQ+      + + A+RD+ +AL     Q D
Sbjct: 466  EEPDIDVDFDSERREEVIQYVFERYGRENAAQVANVIQYRPRFAVRDMAKALGYSSGQQD 525

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
               K +    +                + +     D ++E++Q++    RH   H+ G+V
Sbjct: 526  AWSKQMERWGSEV--------------SGVDHDIPDAVVELAQQVMKFPRHLGIHSGGMV 571

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
            +  RP+ ++VP+    +    V Q++       GL+KFD LGL  L+ +Q S D + +  
Sbjct: 572  LTQRPVGEVVPIEHARKEKRTVVQWDKDDCAWMGLVKFDLLGLGILSAMQYSFDLVDEAL 631

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G + DL+ IP ++   Y  L     +G+FQ+ES      L  +QP     ++  ++L RP
Sbjct: 632  GERWDLATIPAEEQGVYDQLCRADAVGVFQVESRAQMGLLPRLQPREFYHLVVEIALVRP 691

Query: 653  GPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GPI       Y  RK G + I  +HP +   L+ T GV I+QEQ+MQIA  + G S  +A
Sbjct: 692  GPIQGGAVHPYVRRKMGADPITYLHPNLVEPLERTLGVPIFQEQLMQIAVAVGGCSADDA 751

Query: 711  DVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            D+LRRAM  K+  E +DK + +  +G + NGI    A  I+E +  FA +GF +SHA ++
Sbjct: 752  DLLRRAMGSKRGIERIDKLRSKLYAGMASNGIVGADADRIYESIQAFAGFGFAESHALSF 811

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV--- 826
             ++ Y +AW++ HYP  FLAA +  +       +    DAR+  +Q+  P +    V   
Sbjct: 812  GLLVYASAWIRLHYPAAFLAALLRAQPMGFYSPQSLVADARRHGVQVRGPDIQRSGVFAV 871

Query: 827  --------------------------------------DFKVGDNRIYYSLAAIKGVGTT 848
                                                    + G   +   L  +KG+G  
Sbjct: 872  LEQLVDGATAPTGDARCLDHEQPPIGPFDRTAHFDTDDHRRDGAFSVRLGLDEVKGIGAA 931

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+       F S+ D   RV    L  + LE+L  AGA +  G +R + L +  N 
Sbjct: 932  VAEKIVAERESGEFASMNDVVRRV---GLTTKQLEALAAAGAFEVLGLTRREALWNAGNA 988

Query: 909  -QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
                 +++  +       +F                S+     +   +    G     HP
Sbjct: 989  SHDREEYLPNSMVVVQPPLF----------------SLATEFDQLMADLWATGISPQSHP 1032

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            +   +  L + G+    +      G  I +  +V  +Q+  T  G  I ++   +     
Sbjct: 1033 VAHVREALTQRGVLAAADLTVAESGRRIEIGGVVTHRQRPATASG--ITFMNIEDETGLI 1090

Query: 1028 EANF 1031
                
Sbjct: 1091 NVIC 1094


>gi|188992639|ref|YP_001904649.1| hypothetical protein xccb100_3244 [Xanthomonas campestris pv.
            campestris str. B100]
 gi|254777928|sp|B0RY89|DNAE2_XANCB RecName: Full=Error-prone DNA polymerase
 gi|167734399|emb|CAP52609.1| dnaE1 [Xanthomonas campestris pv. campestris]
          Length = 1082

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/1048 (25%), Positives = 464/1048 (44%), Gaps = 90/1048 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G++
Sbjct: 46   PAYAELHCLSDFSFLRGASSAEQLFARAHHCGYSALAITDECSLAGIVRGLEASRATGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                      VLLV  A GY +L  +++       GK +
Sbjct: 106  LIVGSEFTLIDCTRF----------------VLLVENAHGYPQLCSVITTGRRA-AGKGA 148

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + ++    +   ++ G     +   +       AE+     +++F +R ++ ++ 
Sbjct: 149  YRLGRAEVEAHFRD---VVPG-----VFALWLPGDQPQAEQGA-WLQRVFAERAFLAVEL 199

Query: 189  HRGYDRYRESQVVQLAYTH-ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D     Q +Q       +  +A+ +       D    D L A+ H+  ++      
Sbjct: 200  HREQDDAARLQALQALAQQLGMSALASGDVHMAQRRDRIVQDTLTAIRHTLPLADCGAHL 259

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+ R  + +I+      L+ +VE+A+RC+F L       PR +  +       
Sbjct: 260  FRNGERHLRPRRALGNIYPHA--LLQASVELAQRCTFDLSKVQYTYPRELVPQG----HT 313

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR    AG+  R  +GA A      +   ++D EL +IA   +  +FL V D +++
Sbjct: 314  PASYLRQLTEAGMRERWPEGAPA------NVVAQIDSELELIAYKGYEAFFLTVQDVVRF 367

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A S   YAL IT ++P    LL  RFL+ +R   PD D+DF  +R
Sbjct: 368  ARAQHI-LCQGRGSSANSAVCYALGITAVNPSETRLLMARFLSKERDEPPDIDVDFEHER 426

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L           
Sbjct: 427  REEVLQYVYTKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGDT 486

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               Q IA+        LA+P ++++L +++ L    RH S H  G VI D PLS LVP+ 
Sbjct: 487  PMEQRIAE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSMLVPVE 542

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P +D
Sbjct: 543  NAAMADRTIIQWDKDDLETMQLLKVDCLALGMLTCIRKTLDLVRGHRGRDYTIATLPGED 602

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
              TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  
Sbjct: 603  AATYKMIQRADTVGVFQIESRAQMAMLPRLKPREFYDLVIEVAIVRPGPIQGDMVHPYLR 662

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK- 722
            R+ G E +    P ++ +L  T G+ ++QEQVM++  + +GY+ SEAD LRR+M    + 
Sbjct: 663  RRQGYEPVSFPSPGVEEILGRTLGIPLFQEQVMELV-IHAGYTDSEADQLRRSMAAWRRG 721

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             +M+  + R     +  G +      IFE +  F  YGF +SHAA++A + Y + W+K H
Sbjct: 722  GDMEPHRVRIRELMAGRGYAPEFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRH 781

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDAR-----QFNIQIMPPSVNTPCVDFKVGDNRIY- 836
             P  F    +  +        +  QDAR     +  ++++P  V     D  +   R + 
Sbjct: 782  EPAAFACGLLNAQPMGFYSASQIVQDARRGSPERQRVEVLPVDVLHSDWDNILVGGRPWH 841

Query: 837  ------------YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
                          L  + G+       I+ A A +PF  + D C R     L+ +   +
Sbjct: 842  SDADPGEQPAIRLGLRQVSGLSEKVVERIVAARAQRPFADIGDLCLRA---ALDEKARLA 898

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  AGAL     +R     ++  +                 +        + ++   +  
Sbjct: 899  LAEAGALQSMVGNRNAARWAMAGV------------EARRPLLPGSPAERAVELPAPRAG 946

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
             E        + R +G     HP+ + +P + +  I G  E  A   G+ + +A +V  +
Sbjct: 947  EE-----ILADYRAVGLSLRQHPMALLRPQMLQRRILGLRELQARRHGSGVHVAGLVTQR 1001

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            Q+  T KG+   +VT  +         +
Sbjct: 1002 QRPATAKGT--IFVTLEDEHGMINVIVW 1027


>gi|83748142|ref|ZP_00945170.1| DNA polymerase III alpha subunit [Ralstonia solanacearum UW551]
 gi|207739146|ref|YP_002257539.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            IPO1609]
 gi|83725224|gb|EAP72374.1| DNA polymerase III alpha subunit [Ralstonia solanacearum UW551]
 gi|206592519|emb|CAQ59425.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            IPO1609]
          Length = 1081

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/1057 (25%), Positives = 451/1057 (42%), Gaps = 79/1057 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA   + ++ +  A    A+A+TD  ++   +     A  AG++
Sbjct: 18   PDYAELHCISNFTFLTGASHPHELVARAKALGYRALALTDECSVAGTVRAHVAAKEAGLK 77

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+             + +    P+     +VLL    +GY  L E +++  L    K  
Sbjct: 78   LIV--------GSRFTVRDAQGEPW---LRLVLLAQDIDGYGNLCECITQARLA-APKGD 125

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             R+    L         +        I    +    Q    + L  +++FGDRL + L+ 
Sbjct: 126  YRLLADDLAAPADGLAHLRGMPHCLAILLPDYDPDPQRLRAQALWCRQVFGDRLSMALEL 185

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
              R  D      V  ++   ++PLVAT +    S +    HDVL A+  S  +++     
Sbjct: 186  PLRHADDRHRGTVAAVSEQADVPLVATGDVAMHSRQRKPLHDVLTAIRLSRPIAECGLEL 245

Query: 247  RVTPDHYLKNRSEMVSIFSDLPE----ALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              + +  ++ R  M   F    E     L  +VE+A  C F L       P  +  E   
Sbjct: 246  APSAEQAMRTR--MQLAFFYQGERGAPLLRRSVELASLCDFSLDEIEYEYPHEVVPEG-- 301

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                    L  + +AG   R  +   AK       R ++  EL +IA +++  +FL V D
Sbjct: 302  --LTPAAYLHAEVMAGTARRYGKAIPAK------VRAQIAEELALIAELRYEPFFLTVYD 353

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+  +I +  GRGS A S   Y L IT++DP   + LF RFL+  R   PD D+DF
Sbjct: 354  VVRFARSRDI-LCQGRGSAANSAVCYCLGITEVDPESGNTLFARFLSRARNEPPDIDVDF 412

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL +    ++++ K     
Sbjct: 413  EHQRREEVIQYIYGKYGLTRTALAAALITYRTRSALRDVGRALGIDLGVIEQVAKAQAWW 472

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                    A A  +  +      P V R   +  +L G  RH S H  G VI    LS+L
Sbjct: 473  DGQ----HAFAQHAGQQGLDPESPLVQRWAGLVGQLRGFPRHLSQHVGGFVIAQGKLSRL 528

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------AQRGVKV 596
            VP+      D  V Q++   +E   L+K D L L  LT ++++LD L        R    
Sbjct: 529  VPIENAAMRDRRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMLDALPGRRARYGAS 588

Query: 597  D---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            D   +  +P +D +TY +++   T+G+FQ+ES   +  L  ++P    D++  V++ RPG
Sbjct: 589  DKLAMQHLPDEDRDTYDMISRAETIGVFQIESRAQQSMLPRLRPRTYYDLVIQVAIVRPG 648

Query: 654  PIDNIVVYN------NRKNGKEK-IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            PI   +V+         +NG    +    P +  +L+ T GV I+QEQVM+IA    G++
Sbjct: 649  PIQGGMVHPYLQRREAMRNGNSDCVTYPGPEVRAVLERTLGVPIFQEQVMEIAMKAGGFT 708

Query: 707  LSEADVLRRAMGK-KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKS 764
              EAD LRR M   K K  + + +ER +    +           +   +  FA+YGF +S
Sbjct: 709  ADEADRLRRDMAAWKRKGNLTEHQERLMQEMVEVRHYDPAFVEALCRQMEGFAEYGFPES 768

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAA +A ++Y ++++K H P  F AA +  +        +  Q+AR+  ++++P  V   
Sbjct: 769  HAAGFAKLAYVSSYLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSRVRVLPADVTVS 828

Query: 825  CVDFKV--------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
              D  +        G   I   L+ I+G+    A  I+ A A  PF S+ED   R    +
Sbjct: 829  AWDSTLHERPHGAGGQPDIRLGLSRIRGMRPPAAERIVAARAQAPFASVEDLAHRAALDR 888

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             +  VL +          G+ R  L Q+L             +    ++    +      
Sbjct: 889  HDLSVLAAANALLP--LAGHRRQALWQTLAL-----------QEPGQDHALLRQARPVEA 935

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
             + L   S+    V    +   LG     HPL + +P L +M             G   R
Sbjct: 936  PLALLAPSLGEEVV---ADYGSLGLSLQSHPLSLLRPRLERMRFVTAATLAGYRNGQLAR 992

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +V  +Q+  T KG+   +V+  +         +P
Sbjct: 993  ACGIVTVRQRPGTAKGT--IFVSIEDETGVVNVVLWP 1027


>gi|21702583|gb|AAM75980.1|AF481102_16 DNA polymerase alpha subunit [Candidatus Tremblaya princeps]
          Length = 1083

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1041 (34%), Positives = 558/1041 (53%), Gaps = 55/1041 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL++HS YS+ +G + + + ++   AD Q ++A+TD NN+F A++F + A  +G++P
Sbjct: 17   DFVHLRMHSEYSMHDGMVRVEDAVNAARADMQCSLALTDLNNVFGAVKFYKAAVRSGVKP 76

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC L +            +  F    S++ L  +  GY+ +  +++  +         
Sbjct: 77   IVGCHLLL------------RGAFGDTSSVLALARSGGGYRNMCRILTAAWSDAATCVEA 124

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            R+ + WL       +G+++L+G   GPI R     +   A + +  +  +     Y+ LQ
Sbjct: 125  RVDMRWLAGSPRILKGIVVLSGALDGPIGRHIIEGNYSAARRSVDDWLTMTQGSFYLELQ 184

Query: 188  R--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R  H G + Y   + ++L+    +P+VAT+   F++  DY  H V   +A  T+ S+   
Sbjct: 185  RSGHSGTETYV-HRALELSMYSMVPVVATHPIQFIAPSDYPLHCVRCGMAAGTLGSRATG 243

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               T + + K+R  M  IF D+P A+ NT  IAR C+  + +     P F      +   
Sbjct: 244  -MFTREQHFKSRESMSRIFRDIPSAISNTCAIARMCNLDMDIGRLRRPVFAVCSPCN--- 299

Query: 306  EEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             E + L     +GL  R+  G + +     ++Y  R+  E  ++A M F GYFLIV+DF+
Sbjct: 300  -EASALACTLGSGLRSRIMDGRMPRFTGTRREYAARIREEYRIVAGMGFCGYFLIVSDFV 358

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WA+   IPVG GRGSGAGS+ AY L ITDIDP++  LLFERFLNP+R++MPD DIDFCQ
Sbjct: 359  GWARARGIPVGSGRGSGAGSLMAYVLGITDIDPIQHGLLFERFLNPERVTMPDLDIDFCQ 418

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + RD V++YV+ +Y +  VAQI TFG++ A+A++R+  RA+ + Y+  D + +L+P  P 
Sbjct: 419  EGRDRVVQYVRRRYSNGSVAQITTFGTMAARASVREAARAMGVSYTLADSIARLVPIRPG 478

Query: 485  HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              V++  ++ +    R    ++  V  L++ + ++EGL R+ + HA GI+I    +  L 
Sbjct: 479  ARVTIPNSLKEVRMLRSRYASEGDVRLLIDTASRMEGLVRNMAVHAGGIIISPADIQDLC 538

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--AQRGVKVDLSLI 601
            P+Y+   S +PV+Q +    E  GL+KFDFLGL TLT+L  +   +    R V       
Sbjct: 539  PLYQQAGSIVPVSQLDKDDAESLGLVKFDFLGLTTLTILSCAARCVVGTGRAVSQHSLCG 598

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P  D  T+ LL    T+ +FQLE  GM++AL    PD + DIIAL+SLYRPGP+  +  Y
Sbjct: 599  PPCDSATFGLLQAADTVAVFQLEGIGMQEALRITVPDRLGDIIALISLYRPGPMRLVRSY 658

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK+G E    +   + P+L ET GV++YQEQVM+IAQ + GY+  EAD+LRR M +K 
Sbjct: 659  CRRKHGVEAAFVVDERLLPILGETYGVMVYQEQVMRIAQAMGGYTPGEADLLRRVMSRKQ 718

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              +M   +  F++GAS+ GI  + AV +FE + KFA YGFNKSHAAAYA +SYQTAW+K 
Sbjct: 719  PRDMAAHRISFVNGASRLGIGGSSAVAVFEHIKKFASYGFNKSHAAAYATMSYQTAWVKA 778

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------GDNR 834
             +PV+F+AA+M+  + + ++++    D  +  + +  P VN P   F         G   
Sbjct: 779  RHPVDFMAANMSGSLRDYDRLRLLRLDCARRGVPLRAPDVNRPSYRFTPISCYGSEGHGY 838

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I Y L A+K  G    R I     D+PF SL DF +R++S+ + R  +E L+ AGA DC 
Sbjct: 839  IVYGLGAVKCGGEAVVRDIARCREDRPFRSLYDFLARINSRIVKRSAVECLIKAGAFDCK 898

Query: 895  -GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
             G +R  +L  L    +       +R      ++  ++ T +    L   S    +V  +
Sbjct: 899  PGGARATMLAVLPAAMR-------DRHEPTALLWRIQQPTSAA--CLIAASAWRFAV--Q 947

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKG 1012
            +E   LG+YFS HP    +   R +   G +      R    + L  + +S      R G
Sbjct: 948  HESEALGYYFSIHPFSRCRGAARSIAAMGIDAIRRRARPHATLTLCGVALS---MGARSG 1004

Query: 1013 ----SRIGWVTFSEPAKEYEA 1029
                S +      + +     
Sbjct: 1005 PEGHSAMA--AIEDDSDCCTV 1023


>gi|153007424|ref|YP_001368639.1| error-prone DNA polymerase [Ochrobactrum anthropi ATCC 49188]
 gi|151559312|gb|ABS12810.1| DNA polymerase III, alpha subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 1077

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/1049 (23%), Positives = 433/1049 (41%), Gaps = 77/1049 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  +   S++S L GA     ++ +        I I D N L   +             
Sbjct: 3    PYFEMAAASNFSFLCGASHPQELVARAHELGLSGIGIADRNTLAGVVRAHAA-------- 54

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                  D   + + ++    +  F    P +V+       Y +L  L++        K  
Sbjct: 55   ----WKDFRDKSDFRLFIGCRLSFTDGTPDMVVYPRDRPAYGQLCRLLTEGKARAAIKGE 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
              +    L     +  I +              +    A  RL    +     +++ L  
Sbjct: 111  CHLEWGDLLFRARQFQIAVFPPED---------DRPDFA-ARLTEIAQAAPGSVWLALAM 160

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             H+G+D  R  ++ + A    +PL+ATN+ L+   +     DVL A  + T V    +  
Sbjct: 161  PHQGHDGRRAERIARFAAEANVPLLATNDVLYHHPDRRALQDVLTATRYHTTVFAAGQLL 220

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK   EM+ +F D  EA+E T +     +F L       P           K 
Sbjct: 221  EKNAERHLKPPKEMLRLFRDYAEAVEATADFVAPITFQLDELKYDYPDEPVPPG----KT 276

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L +    G        +I         +  +  EL +I +++++ YFL V D + +
Sbjct: 277  PQQHLHDLTWEGAARHYGANSI-----PPKVQTLIHKELALIEKLQYAAYFLTVYDIVSY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++ +I +  GRGS A SV  + L +T +DP +  LLFERFL+ +R   PD D+DF  +R
Sbjct: 332  ARREDI-LCQGRGSAANSVVCFCLGVTGVDPTQVDLLFERFLSVERKEPPDIDVDFEHER 390

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV  +Y  +R A + T  S ++++A+RDVG+AL +       L   +       
Sbjct: 391  REEVMQYVYKRYSRDRAAIVATVISYRSRSAIRDVGKALGLTEDVTAALANTVWGISGGG 450

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+ 
Sbjct: 451  IDKQHI----RQAGLDPDNPIIRRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIG 506

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV------DLSL 600
                 D    +++   I++ GL+K D L L  LT ++K+ D + Q   +        L+ 
Sbjct: 507  PAAMEDRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPEKYDGKKLTLAN 566

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 567  LPREDEAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPREFYDLVIEVAIVRPGPIQGDMV 626

Query: 659  VVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
              Y  R+N +E      P         +  +L +T+GV ++QEQ M+IA   + ++  EA
Sbjct: 627  HPYLRRRNNEEPCTLPSPAPEYGPPDELLQILGKTKGVPLFQEQAMRIAMEAAKFTPDEA 686

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LRRAM   +    +   + + I G    G  +T A N F  +  F +YGF +SHAA++
Sbjct: 687  NQLRRAMATFRKMGTIHTMETKMIEGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASF 746

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  
Sbjct: 747  AHLVYISAWIKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSHWDNM 806

Query: 830  VG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +         +      I G        ++    + P+ ++ED   R+     +RR    
Sbjct: 807  LEDTLDIRPALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRLRL---DRRAFTL 862

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  A A       R   L ++  +            ++   +F     +   +    K  
Sbjct: 863  LADADAFGSLDIDRRAALWAVRRLP----------NDETLPLFRAAATSELAEEPRTKLP 912

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
               +S     +         GHPL   +  L   G+           G  +++A +V  +
Sbjct: 913  EMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVR 972

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG  + ++T  +         +P
Sbjct: 973  QRPGSAKG--VVFLTIEDETGIANIVVWP 999


>gi|300173404|ref|YP_003772570.1| DNA polymerase III subunit alpha [Leuconostoc gasicomitatum LMG
            18811]
 gi|299887783|emb|CBL91751.1| DNA polymerase III alpha subunit [Leuconostoc gasicomitatum LMG
            18811]
          Length = 1115

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/1030 (30%), Positives = 515/1030 (50%), Gaps = 51/1030 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQ+ S+YSLL+   ++  I++        AIA+TD N ++ A++F Q A    I+P+
Sbjct: 2    YAPLQILSAYSLLKNPNTIEQIIETAKKRHYQAIALTDINVMYGAVKFYQVAKENNIKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L ++          G     TV  IVL+     GYQ L+ + S        + ++ 
Sbjct: 62   FGVTLQVN----------GLVNTATVFPIVLIAENQTGYQNLMWISSAKMTTKISEMTLD 111

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    L       +I     +   I +      +Q  +       K+   +LY+ +    
Sbjct: 112  VITGHL---AGINIIF---PNDSEISQFIASEYTQSVDYWQQLITKIDPKKLYLGINPQL 165

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVT 249
                  + ++V  +  ++  L+A +   +L+ +D     VL A+  +T +   K   +  
Sbjct: 166  AP--QIQERLVTFSAKNQAKLIALDTVDYLNPDDAFTTQVLKAIETNTKLDDIKLLAQQI 223

Query: 250  PDHYLKNRSE--MVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              H L++  E  +  + +D L  A  N   +  +    +           +    +  + 
Sbjct: 224  GTHVLQDFDEVQIAYLANDALKTAYLNNELLVSKSQVEIVFKQTA--TLPKFRLPNENQT 281

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             EN LR+ A  GL  R+      +      Y +RL  EL +I  + F+ YFLIV D + +
Sbjct: 282  SENYLRSIAEKGLLERIN----GRQVALDQYEKRLQHELQIIDNLAFNDYFLIVWDIVNF 337

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A + NI +G GRGS AGS+ AYAL ITD+DP++F LLFERFLNP R+ MPD DID+  ++
Sbjct: 338  AHQKNIQMGAGRGSAAGSLVAYALRITDVDPIQFGLLFERFLNPQRIQMPDIDIDWPDNK 397

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAH 485
            RD ++ Y+ +KYG    AQI+TFG+L AK ALRD  R   +    + R+   +P      
Sbjct: 398  RDLILNYLHDKYGQRNFAQILTFGTLAAKQALRDTARVFGVSQQMMSRISNAVPQGKQGR 457

Query: 486  PVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             V +Q   + S      L+D     LL +++Q +EGL R+ STHAAG+V+   PL   +P
Sbjct: 458  KVLIQDTLNASNVLRTVLSDVDNGELLLKVAQHIEGLPRNYSTHAAGVVLSSEPLINTLP 517

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPF 603
            +      D  +TQF    +E  GL+K D LGL  L++L ++L D   Q     D+S IP 
Sbjct: 518  VQ-SGSDDRLLTQFEKNPVEALGLLKIDILGLSNLSILAQTLYDAKKQLPDHFDISKIPL 576

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +T  L     T G+FQ ESSG++  L  ++P   E I+A+ +LYRPGP  NI  +  
Sbjct: 577  DDSKTLALYAKGDTNGVFQFESSGIKNVLRQLKPTTFEHIVAVNALYRPGPSRNIQSFIQ 636

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++G EK+  +   +  +L  T G+I+YQEQVM +A+  +G++L EAD+LR AM KK  E
Sbjct: 637  RRHGHEKVTILDSSLKTILAPTFGIIVYQEQVMLVAETFAGFTLGEADLLRSAMSKKKIE 696

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M    E+F+ GA   G     A  IF  + +FA+YGFN+SHA AY+ +S++ A+MK HY
Sbjct: 697  KMTAMHEKFVQGAIDLGHDGEQAEQIFAYIDEFANYGFNRSHAVAYSKLSFELAYMKAHY 756

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PV F  A +   + + EKI+ +  +A+  NI++ PP++N     +   D ++   L  I+
Sbjct: 757  PVAFFTALLNANLGSPEKIRSYIMEAKLRNIEVSPPNINQSQRFWTADDQKLQMGLTNIR 816

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GV T     ++     +  F S++ F  R+  K   +  L  LV+AGALD FGY+R +L+
Sbjct: 817  GVRTDFVSAVLAERQENGHFKSIQSFIRRLPDKLRKQDTLIQLVYAGALDAFGYNRSELI 876

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             +L ++ + A              F         +  ++K      + +  +E+  +G  
Sbjct: 877  TALADLIEAAG-------------FGDF---ILSETKIKKSDDFTLTDKLAHEKEAIGVN 920

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             SGHPLD Y  ++     +   + +   +   I+   ++ S ++ +T+KG  + ++T S+
Sbjct: 921  LSGHPLDTYSALIISKKFEQIADMI--KKDQKIKTIVIIDSIRKTRTKKGEEMAFMTVSD 978

Query: 1023 PAKEYEANFF 1032
                     F
Sbjct: 979  ITGTIGITVF 988


>gi|326795443|ref|YP_004313263.1| Error-prone DNA polymerase [Marinomonas mediterranea MMB-1]
 gi|326546207|gb|ADZ91427.1| Error-prone DNA polymerase [Marinomonas mediterranea MMB-1]
          Length = 1057

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/1044 (24%), Positives = 460/1044 (44%), Gaps = 86/1044 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L V SSY+  +GA     ++++        IAITD  +L   ++  + +   GI  
Sbjct: 24   RYAELHVISSYTFQQGASHPWELVERAQKLNYAGIAITDECSLAGVVKAHEASKEHGIPL 83

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    +                    S+++L  + E Y++L  L+++    +  K   
Sbjct: 84   IIGSTFQV-----------------KGFSLIVLAPSIEAYRKLSMLITKGR-RNAEKGHY 125

Query: 130  RICLS-WLQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             + L  +L E+ G   +I++T              S       +      + + +++ LQ
Sbjct: 126  HLQLEDYLSELQGCLFIIVIT--------DNTLEQSFSSITSNIKKISDCYPNNVWLGLQ 177

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQKDR 245
            +     DR ++  V +L     LP+ A ++            DV+ A+  H++V     R
Sbjct: 178  QLLTPTDRAKKQTVYRLFSMLRLPVTAVSSVDMHEPSRQPLRDVMTAIRLHASVNKLNGR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +L++  ++  ++SD  + LE ++ I  RC F L       P+ +  E      
Sbjct: 238  QAPNAETHLRSPKKLRKLYSD--QELEESLTILERCHFSLDELKYDYPKDLVPEG----T 291

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 L+     GL  R +          Q   ++++ EL++I  +KF  YFL V D ++
Sbjct: 292  TPSGYLKQLTYEGLHRRYSDCV------PQAIEKQIEKELSIIKELKFEHYFLTVWDIVK 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+K NI +  GRGS A S   Y L IT+++P    LLFERF++ +R   PD D+DF  +
Sbjct: 346  FARKRNI-LCQGRGSAANSAVCYCLGITEVNPANTDLLFERFISKERHEPPDIDVDFEHE 404

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  +YG ER A   T  + +AK+A+RDVG+AL      + +L K +      
Sbjct: 405  RREEVIQYLYQRYGRERAALAATVITYRAKSAIRDVGKALGYEEHFLSKLIKKLDRRDKA 464

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L+ ++D    + +          L++ +++ G  RH S H  G VI    +  LVP+
Sbjct: 465  TPWLKQLSDYGNAKPSY----QFQLFLKLVEEILGFPRHLSQHVGGFVIAAERVDHLVPV 520

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604
                     + Q++   +E  GL+K D L L  LT ++KSL+ +   +G    L  IP +
Sbjct: 521  ENASMEGRTIIQWDKDDLESLGLLKVDVLALGMLTAIKKSLNLISKIKGAPFTLQSIPRE 580

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
            DH+ Y +L    ++G+FQ+ES      L  ++P+C  D++  V++ RPGPI   +   Y 
Sbjct: 581  DHKVYDMLQKGESIGVFQIESRAQINMLPRLKPNCFYDLVIQVAIVRPGPIQGGMVHPYL 640

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R+ G + I      I  +L  T GV I+QEQV+++A + + +S  EAD LRRAM   K 
Sbjct: 641  QRRAGTQAINYPSAEIKSVLNRTLGVPIFQEQVIKLAMVAASFSAGEADQLRRAMAAWKR 700

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               +   +++   G  + G  +  A  +   +  F +YGF +SHAA++A++ Y ++W+K 
Sbjct: 701  TGRLKPFQDKLKQGMLERGYDEVFADQLCMQIQGFGEYGFPESHAASFAILVYFSSWLKH 760

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------- 831
            +YP  F  + +  +        +  QDA++  + + P  V     D  +           
Sbjct: 761  YYPTVFCCSLLNSQPMGFYTPYQLIQDAQRNGVIVKPVCVQHSEWDHTLERLSESEQQNQ 820

Query: 832  ---DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I      +KG+    +  + +   + PF SLE+F +RV   K N+R  E+L  +
Sbjct: 821  QDKQFAIRLGFRLVKGMSHEGSVRLTQKRGNTPFTSLEEFLNRV---KPNKRDKEALASS 877

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA      +R Q    +   Q+  +   +                   KI L   S +  
Sbjct: 878  GAFSVLSGNRFQARWDILGHQQETELNLELNN--------------ETKIALPTPSEQID 923

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
            ++    + + +G     HP+   +            E         IR++ +V  +Q+  
Sbjct: 924  TL---EDLKSMGVSLGKHPMRFLREQGACYKCTPSNELEQGTHQQLIRVSGLVTGRQRPG 980

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T  G  + ++T  +         +
Sbjct: 981  TASG--VTFITLEDEFGNTNVVVW 1002


>gi|85708489|ref|ZP_01039555.1| DNA polymerase III subunit alpha [Erythrobacter sp. NAP1]
 gi|85690023|gb|EAQ30026.1| DNA polymerase III subunit alpha [Erythrobacter sp. NAP1]
          Length = 1191

 Score =  767 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/1087 (24%), Positives = 461/1087 (42%), Gaps = 100/1087 (9%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            L    E++P FV L + S +S L GA    ++     +    AI I D N+    +    
Sbjct: 19   LIDRPERAP-FVELGLVSCFSFLRGASDAVDLAMTARSLGYDAIGIADANSFAGVVRIHT 77

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            +A    ++P+IGC                +       + +        Y RL  L+S   
Sbjct: 78   EATTLKLRPVIGC----------------RIETVEGIAFLAYPKDRAAYGRLSRLISAGR 121

Query: 121  L-----LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQ 165
            +       Q K   +I L+ L E G    ++L        + A                 
Sbjct: 122  MQTLSGEWQEKGVCQIDLAMLAEHGEGIQLILLPPEDLETEFAILVPSNVVPLRPQGDEA 181

Query: 166  VAEKRLLTFKKLFGD--------RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNS 217
             A + + +F ++                   +RG D  R  ++  LA+ + L L+ATN+ 
Sbjct: 182  EAIEVVASFGEILPHLTRQLPSLGHIAASYLYRGDDTARIDRLDALAHENGLTLLATNDV 241

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
             + + E     DV+ A+A+ T V+Q         + +LK+  EM  +F+  P A+    E
Sbjct: 242  HYHAPERRPLQDVMTAIANKTTVAQAGHLLHANAERHLKSPQEMQHLFARWPHAIHAARE 301

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            +A  C F L+      P  I  +        +  L  +  AG E R   G          
Sbjct: 302  VADNCDFSLEELRYEYPEEIYPDGM----SPQEYLEIETWAGAERRYPHGV------PDS 351

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV-GPGRGSGAGSVTAYALTITDI 395
              Q L+ EL +IAR+  + YFL + D + +A+    P+   GRGS A S   Y L IT +
Sbjct: 352  VEQTLERELALIARLDLARYFLTIKDIVDFARSVEPPILCQGRGSAANSAVCYCLEITSV 411

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DP +  LLF+RF++ +R   PD D+DF  +RR+EVI+Y+  KYG ER     T    + +
Sbjct: 412  DPAKHQLLFDRFISEERKEPPDIDVDFEHERREEVIQYIYKKYGRERAGLTATVIHYRPR 471

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A+R+VG+A+ +       L K +       +S +  A+        + DP + R+L+++
Sbjct: 472  MAIREVGKAMGLSEDVTASLAKTVWGGWGREISEKHAAETG----MDITDPHLRRVLKLT 527

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            +++ G+ RH S H  G ++ +  L++ VP+      +    +++   IE  G++K D L 
Sbjct: 528  EQMIGMPRHLSQHVGGFILTEGALTETVPIGNGAMPERSFIEWDKDDIEALGILKVDVLA 587

Query: 576  LKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L  LT ++K LD L A  G  + L+ +P +D ETY +L    +LG+FQ+ES      L  
Sbjct: 588  LGMLTCIKKCLDLLEAHHGRALTLATVPREDPETYAMLRKGDSLGVFQVESRAQMNMLPR 647

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSI-----H---PLIDPMLKE 684
            ++P    D++  V++ RPGPI  D +  Y  R+ G E +        H     +  +L+ 
Sbjct: 648  LRPREFYDLVIQVAIVRPGPIQGDMVHPYLKRRRGAEPVQIPAPSPQHGPPDELSSILER 707

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISK 743
            T GV I+QEQ M+IA   + +S  EA+ LR+AM   + +  +D+ ++  +      G   
Sbjct: 708  TLGVPIFQEQAMKIALDAAKFSSLEANRLRKAMATFRSRGMVDELQDMMVGRMVTRGYDP 767

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
              A   F  +  F +YGF +SHAA++A + Y ++W+K H+P  F AA +  +        
Sbjct: 768  DFAERCFNQIRGFGEYGFPESHAASFAHLVYVSSWLKCHFPAAFAAALLNSQPMGFYAPA 827

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG---------------DNRIYYSLAAIKGVGTT 848
            +  +DAR+  ++++PP VN    D  +                   +   L  I G+   
Sbjct: 828  QIVRDAREHGVEVLPPDVNASQWDCTLEEIGEAGDGETGRLDKHIAMRMGLRQIDGLPEH 887

Query: 849  TARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             A  ++ A  +   +  + +   R     L    +E L  A A    G SR Q L    +
Sbjct: 888  IAAQLIAAREEGGGYRDVAELRER---GGLGPAHIERLASADAFTSLGLSRRQALWDARS 944

Query: 908  IQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
            +                 +F A  +     +    +      S     + +        H
Sbjct: 945  LI----------AGPDLPLFRAAAERDEGAERARTQLPAMPLSEEVVADYQTTRLSLKAH 994

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P+   +  L + G     +       + +++A +V+ +Q+  + KG  + ++T  +    
Sbjct: 995  PMSFLRAGLAERGFVRACDLRNRKFRSMVKVAGVVLIRQRPGSAKG--VCFITLEDETGV 1052

Query: 1027 YEANFFP 1033
                 +P
Sbjct: 1053 INLVVWP 1059


>gi|172038990|ref|YP_001805491.1| DNA polymerase III subunit alpha [Cyanothece sp. ATCC 51142]
 gi|171700444|gb|ACB53425.1| DNA polymerase III alpha subunit, N-terminal extein/intein
           [Cyanothece sp. ATCC 51142]
          Length = 874

 Score =  767 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/812 (38%), Positives = 469/812 (57%), Gaps = 63/812 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  LN ++D+    + PAIA+TD   ++ A+E  +     G++P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLNALIDRAVELEMPAIALTDHGVMYGAIELIKVCRNKGVKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +   D  +               V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62  IIGNEMYVINGDIEEKK------KYKKYHQVVLAKNTQGYKNLVKLTTISHLKGMQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L++   EGLI+ +    G I +       + A+     +KKLF +  Y+ 
Sbjct: 116 FARPCINKELLEQYH-EGLIVTSACLGGEIPQRILAGDIKEAKAVAKWYKKLFKEDFYLE 174

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR     + ++A   ++ +VATN+S F+S  D EAHD L+ +    +++ + 
Sbjct: 175 IQDHGSVEDRIVNVAIAKIARDLDIKIVATNDSHFISCYDVEAHDALLCIQTGKLITDEK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQV-HAPILPRFIE 297
           R R +   YLK+  EM  +F D      + EA+ NT+E+A +      +   P +P +  
Sbjct: 235 RLRYSGTEYLKSADEMRLLFRDHLSDDVIEEAVNNTLEVAEKIEPYKDILGEPRIPNYPV 294

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                     ++ +   A  GL  RL     ++     +YR+RL++EL ++ +M FS YF
Sbjct: 295 PAG----HNPDSYVEEIAWQGLLERLK--CRSRSEIPDEYRERLEYELKMLQQMGFSTYF 348

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           L+V D+I++A+ N+IPVGPGRGS AGS+ AY L IT+IDP+   LLFERFLNP+R SMPD
Sbjct: 349 LVVWDYIKYARDNHIPVGPGRGSAAGSLVAYCLKITNIDPVHHGLLFERFLNPERKSMPD 408

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D DFC +RRDE+I+YV  KYG   VAQIITF  + +KA L+DV R L +PY++ D++ K
Sbjct: 409 VDTDFCIERRDEMIKYVTRKYGEANVAQIITFNRMTSKAVLKDVARVLDIPYAESDKMTK 468

Query: 478 LIPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
           +IP     P  L+ +  D      F+E    DP V R ++++ ++EG  +    HAAG+V
Sbjct: 469 MIPVSRGKPTKLKVMVSDETPTPEFKERYENDPLVRRWVDMAIRIEGTNKTFGVHAAGVV 528

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
           I   PL Q+VP+ ++      +TQ+ M+ +E  GL+K DFLGL+ LT +Q++ D + Q  
Sbjct: 529 ISSEPLDQVVPLQKN-NDGAVITQYYMEDLESLGLLKMDFLGLRNLTTIQRTADLIKQNQ 587

Query: 594 -VKVDLSLIPFDD-------------------HETYHLLTTKGTLGIFQLESSGMRQALE 633
            V +DL  +P D+                    +T+ LL      GIFQLESSGM+Q ++
Sbjct: 588 GVTLDLDQLPLDERKALEIIAKGTAKKLPPDVEKTHKLLEKGDLEGIFQLESSGMKQIVK 647

Query: 634 GMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            ++P  IEDI ++++LYRPGP+D   I  + NRK+G+E+I+  H L++P+LKET  V++Y
Sbjct: 648 DLKPSGIEDISSILALYRPGPLDAGLIPKFINRKHGREEIIYQHKLLEPILKETYAVLVY 707

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QEQ+M++AQ L+GYSL EAD+LRRAMGKK   EM K +E FI GA+KNG+S+ IA ++FE
Sbjct: 708 QEQIMKMAQDLAGYSLGEADLLRRAMGKKKIAEMTKHREIFIDGATKNGVSQAIAEDLFE 767

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            + KFA+Y            +SY T  +   Y
Sbjct: 768 QMIKFAEYC-----------LSYDTEILTVEY 788


>gi|237800158|ref|ZP_04588619.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023015|gb|EGI03072.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 728

 Score =  767 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/740 (42%), Positives = 440/740 (59%), Gaps = 35/740 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  +GI+P
Sbjct: 4   SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q    +
Sbjct: 64  ICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
            I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+ +QR 
Sbjct: 114 VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
           +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +    R   
Sbjct: 173 NRTNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHN 232

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   I    
Sbjct: 233 YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288

Query: 308 ENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
           +   R  +  GLE RLA               Q Y  RL+FEL++I +M F GYFLIV D
Sbjct: 289 DEYFRKVSFDGLEERLAVLLPKDTTEDYEARRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           FIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI    L+  
Sbjct: 469 VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597
            P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV     D
Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEAPLD 587

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588 IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658 IVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            +V  + NRK+G+ ++   H       + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648 GMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711 DVLRRAMGKKIKEEMDKQKE 730
           D+LRRAMGKK  EEM KQ+ 
Sbjct: 708 DMLRRAMGKKKPEEMAKQRG 727


>gi|86137385|ref|ZP_01055962.1| DNA polymerase III, alpha subunit, putative [Roseobacter sp. MED193]
 gi|85825720|gb|EAQ45918.1| DNA polymerase III, alpha subunit, putative [Roseobacter sp. MED193]
          Length = 1130

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/1063 (24%), Positives = 440/1063 (41%), Gaps = 75/1063 (7%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             ++   ++  L V ++++ L GA     ++ + A     AIAITD N+L   +       
Sbjct: 19   AVQAQAAYAELCVTTNFTFLTGASHPEELVMRAAELGLSAIAITDQNSLAGVVRAWSALK 78

Query: 64   AAGIQ----PIIGCQLDIDMQDNLKMTNQG---KTPFPTVPSIVLLVS------------ 104
                +      I     +D       +      + P  ++P +++               
Sbjct: 79   KLKQESQEALQIRSHQQVDPSSRQDSSQGRPLTRPPVLSLPKLIVGCRLVLQDSNLHWIA 138

Query: 105  ---TAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                   Y+RL  L++                  +       LI L         R +  
Sbjct: 139  LPQDKAAYKRLTRLLTLGKRRTTKGGCDLYTKDLIAACKGMILIALP-------QRNWSQ 191

Query: 162  NSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
             S   +   +    +   +++++    H  G D+   +   Q A     P+VA  + L  
Sbjct: 192  RSLSQSIPEIQAMGRHHPNQVFLGAAPHYDGSDQAYLASCAQAAQRASAPMVAVGDVLMH 251

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
                 +  DVL  + H   + +   R     +  LK  S+M  +F   P AL  TVEIA 
Sbjct: 252  RAGRRQLADVLTCMRHHITIDEIGTRALPNGERRLKAGSDMARVFRHYPAALRRTVEIAA 311

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
            +CSF L   +     +  +E +   +  ++ L   A  GL+ R  +G   +        Q
Sbjct: 312  KCSFDLGQLSY---EYPHEEME--AQTPQHRLEQLAKEGLKRRYPEGPPERAI------Q 360

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
             ++ EL V+ ++ F  YFL V D +Q+AK   I +  GRGS A S+  Y L ITD+ P  
Sbjct: 361  LMEKELAVVRQLNFPAYFLTVHDIVQFAKSQGI-LCQGRGSAANSILCYLLGITDVSPDM 419

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
             +++FERF++  R   PD D+DF  +RR+EVI+++  KYG ER     T    + +AA+R
Sbjct: 420  IAMVFERFVSKHRGEPPDIDVDFEHERREEVIQWIYQKYGRERAGLCATVIHFRTRAAIR 479

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            +VG+ + +       L   I       +    I +        L D  + + L +  +  
Sbjct: 480  EVGKVMGLSQDVTAGLSGQIWGMSTGGLDFTRIRELG----LDLKDRRLMQTLHLIGEFI 535

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G  RH S H  G VI    L +L P+      D  V  ++   I+  G++K D LGL  L
Sbjct: 536  GFPRHLSQHVGGFVITRGRLDELAPIENAAMEDRTVICWDKDDIDALGILKVDILGLGML 595

Query: 580  TLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            + ++KS   L Q       ++ IP  D  TY +L     +G+FQ+ES      L  M+P 
Sbjct: 596  SCIRKSFALLQQHETLSHSIASIPQGDVATYDMLCRADAVGVFQVESRAQMNFLPRMRPR 655

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
               D++  V++ RPGPI  D +  Y  R+NG EK     P ++ + + T GV ++QEQ M
Sbjct: 656  EFYDLVIQVAIVRPGPIQGDMVQPYVRRRNGLEKAEPFGPALEEVTRRTLGVPLFQEQAM 715

Query: 697  QIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            QIA + +G+S  EAD LRR++   +    +   +++FI+G   NG    +A   F  +  
Sbjct: 716  QIAVVGAGFSPEEADHLRRSLASFRRMGTIATYRDKFITGMLNNGYDPDMAERCFGQIEG 775

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FADYGF +SHAAA+A++ Y +AW+K H+P  F  A +  +        +  +D R+ +++
Sbjct: 776  FADYGFPESHAAAFAMLVYVSAWLKCHHPAIFSCALLNSQPMGFYAPAQIVRDTREHDVE 835

Query: 816  IMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
              P  VN    D  +     G   +      IKG     A  I+ A  +  + + E    
Sbjct: 836  TRPICVNRSAWDNTLERRPDGALALRLGFRQIKGFKKEDAEWIVAARGNG-YPNPEALWL 894

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            R   +      L  L  A A    G +R   L  +  I          R+ K   +F   
Sbjct: 895  RAGLR---PDALARLGEADAFCDMGLTRRDALWQIKAI----------RSKKPLPLFNDP 941

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
                + +             +   +          HP+++ +P L   G+  +       
Sbjct: 942  IDGENIQEPKIDLPGMQLGEQVVEDYVATRLSLRAHPMELLRPALT--GLVTHAALPEIP 999

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G    +  +V+++Q+  T  G  + ++T  +         +P
Sbjct: 1000 LGRY-SVCGLVITRQRPGTASG--VIFLTLEDETGVSNVVVWP 1039


>gi|17375431|sp|P74750|DPO3A_SYNY3 RecName: Full=DNA polymerase III subunit alpha; Contains: RecName:
           Full=Ssp dnaE intein
          Length = 1355

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/811 (36%), Positives = 463/811 (57%), Gaps = 62/811 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+      PAIA+TD   ++ A+E  +      I+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAVELLKVCRGKPIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD----QG 125
           IIG ++ +   D        +         V+L    +GY+ L++L +   L        
Sbjct: 62  IIGNEMYVINGDIEINKRHRR------FHQVVLAKNNQGYRNLVKLTTISNLKGIQGSGI 115

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L++   EGLI+ +    G + +A        A +    +K LFGD  Y+ 
Sbjct: 116 FARPCINKELLEQY-KEGLIVTSACLGGEVPQAILKGDLDHARQVAKWYKNLFGDDYYLE 174

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR     +V++A   ++ +VATN+S F+S  D EAHD L+ +    +++++ 
Sbjct: 175 IQDHGSVEDRLVNINLVKIAQELDIKIVATNDSHFISCNDVEAHDALLCIQTGKLITEEK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSD-LPE-----ALENTVEIARRCSFILQVHAPILPRFIEK 298
           R R +   YLK+  EM  +F D LP+     A+ NT+E+A +      +  P +P +   
Sbjct: 235 RLRYSGTEYLKSAEEMHLLFRDHLPDDIIETAIANTLEVADKVEAYSILGEPRIPHYPIP 294

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                    E  + + A  GL  RL      +      Y++RL++EL ++ +M F  YFL
Sbjct: 295 PN----HTPETYVEDIAWDGLLERLK--CRERADITPVYKERLEYELRMLEKMGFCTYFL 348

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           +V D+I++A+ + IPVGPGRGS AGS+ AY + IT+IDP+   L+FERFLNP+R SMPD 
Sbjct: 349 VVWDYIKYARDHGIPVGPGRGSAAGSLVAYCMKITNIDPVHHGLIFERFLNPERKSMPDV 408

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D DFC DRRDE+I YV  KYG ++VAQIITF  + +KA L+DV R L +PY++ D++ K+
Sbjct: 409 DTDFCIDRRDEMIEYVTQKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYAESDKMAKM 468

Query: 479 IPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           IP     P  L+ +      + +F+     +P V + ++++ ++EG  +    HAAG+VI
Sbjct: 469 IPVSRGKPAKLKVMISDQTPEPQFKARYDNEPWVKKWIDMAIRIEGTNKTFGVHAAGVVI 528

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
              PL Q+VP+ ++      +TQ+ M+ +E  GL+K DFLGLK LT LQ++++ +A+ +G
Sbjct: 529 SSEPLDQIVPLQKN-NDGAVITQYYMEDVEAMGLLKMDFLGLKNLTTLQRAVELVAETKG 587

Query: 594 VKVDLSLIPF------------------DD-HETYHLLTTKGTLGIFQLESSGMRQALEG 634
           +++DL  +P                   DD  +T+ LL      GIFQLES GM+Q +  
Sbjct: 588 IELDLDDLPLQERKALQIRARTGSKKLPDDVKKTHKLLEAGDLEGIFQLESQGMKQIVRD 647

Query: 635 MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           ++P  IEDI ++++LYRPGP+D   I ++ NRK+G+E+I   H L++P+L ET GV++YQ
Sbjct: 648 LKPSGIEDISSILALYRPGPLDAGLIPIFINRKHGREEISYQHKLLEPILNETYGVLVYQ 707

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQ+M++AQ L+ YSL EAD+LRRAMGKK  EEM K + +F+ G++K+G+   IA N+F+ 
Sbjct: 708 EQIMKMAQDLADYSLGEADLLRRAMGKKKAEEMQKHRAKFVDGSTKHGVPSRIAENLFDQ 767

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           + KFA+Y            +S+ T  +   Y
Sbjct: 768 MVKFAEYC-----------LSFGTEILTVEY 787



 Score =  280 bits (717), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 86/295 (29%), Positives = 147/295 (49%), Gaps = 16/295 (5%)

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
              A   FNKSH+ AYA ++YQTA++K +YPVE++AA +T   D+ EK++K+ ++ ++  I
Sbjct: 929  AIAANCFNKSHSTAYAYVTYQTAYLKANYPVEYMAALLTASSDSQEKVEKYRENCQKMGI 988

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSR 871
             + PP +N     F      I + L+A++ +G      I+ A     +K F SL DFC++
Sbjct: 989  TVEPPDINRSQRHFTPLGEAILFGLSAVRNLGEGAIEQIITARDNSEEKRFKSLADFCTQ 1048

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--- 928
            VD + +NRR +E+L+ AGA D    +R QLL  L+ +  +AQ   K +     NIF    
Sbjct: 1049 VDLRVVNRRAIETLIMAGAFDGVQSNRNQLLHDLELVIAWAQKRAKEKETGQLNIFDSLT 1108

Query: 929  ---------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                          F  + +    +  +   + + E+  LGFY S HPL   +   R + 
Sbjct: 1109 AGESIKAKEAANNGFEQEPSAPPVAEFSLQEKLQLEKEHLGFYVSEHPLKSVQRSARLLS 1168

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
                 +         +   A++V+ ++  T+K G  + ++T  + + + EA  FP
Sbjct: 1169 PINLVDLDQYKVRQKVSAVAILVAVKKIITKKNGQPMAFLTLEDMSGQSEAVVFP 1223


>gi|84624896|ref|YP_452268.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzae MAFF
            311018]
 gi|84368836|dbj|BAE69994.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzae MAFF
            311018]
          Length = 1065

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/1050 (25%), Positives = 459/1050 (43%), Gaps = 93/1050 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + +   G++
Sbjct: 28   PTYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRVTGVR 87

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL--DQGK 126
             I+G +  +                      VLLV  A GY ++  LV+           
Sbjct: 88   LIVGSEFTLIDGTRF----------------VLLVENAHGYPQVCGLVTTARRAASKGAY 131

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            +  R  +         G+  L           +       AE+     +++FG+R ++ +
Sbjct: 132  RLGRADVEAQFRDVAPGVFAL-----------WLPGVQPQAEQGA-WLQQVFGERAFLAV 179

Query: 187  QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            + HR  D   R   +  LA    +  VA+ +       +    D L A+ H+  +++   
Sbjct: 180  ELHREQDDGARLQVLQALAQQLGMTAVASGDVHMAQRRERIVQDTLTAIRHTLPLAECGA 239

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  + +L+ R  + +I+ D        V +A+RC+F +   +   PR +  E     
Sbjct: 240  HLFRNGERHLRTRRALGNIYPDALLQAA--VALAQRCTFDISKISYTYPRELVPEG---- 293

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR    AG+  R   G  AK       R+ ++ EL +IA  K+  +FL V D +
Sbjct: 294  HTPTSYLRQLTEAGIRKRWPGGITAK------VREDIEKELALIALKKYEAFFLTVQDVV 347

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A++ NI +  GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF  
Sbjct: 348  RFAREQNI-LCQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEH 406

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L         
Sbjct: 407  ERREEVLQYVYRKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNG 466

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 Q I +        LA+P ++++L +++ L    RH S H  G VI D PLS LVP
Sbjct: 467  ETPMEQRIEE----AGFDLANPLINKILLVTEHLRDHPRHLSQHVGGFVISDEPLSLLVP 522

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPF 603
            +     +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P 
Sbjct: 523  VENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYSIATLPG 582

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y
Sbjct: 583  EDLPTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHPY 642

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R+ G+E +    P ++ +LK T GV ++QEQVM++    + Y+ SEAD LRR+M    
Sbjct: 643  LRRRQGREDVSYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYTESEADNLRRSMAAWR 702

Query: 722  K-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            +  +M++ + R        G + T    IFE +  F  YGF +SHAA++A + Y + W+K
Sbjct: 703  RGGDMEQHRMRVRERMQGKGYASTFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLK 762

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDAR-----QFNIQIMPPSVNTPCVDFKVGDNRI 835
             H P  F    +  +        +  QDAR     +  ++++P  V     D  +   R 
Sbjct: 763  RHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVVHSDWDNTLVGGRP 822

Query: 836  Y-------------YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
            +               +  + G+    A+ I+ A   + F  + D C R     L+ +  
Sbjct: 823  WRSAADPGEQPAIRLGMRQVAGLSDVVAQRIVAARTQRAFADIGDLCLRA---ALDEKAC 879

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
             +L  AGAL     +R     ++  +                 +     G+  ++     
Sbjct: 880  LALAEAGALQGMVGNRNAARWAMAGV------------EARRPLL---PGSPEERPV--A 922

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            F   ++      + R +G     HP+ + +P +R+  I G  +      G+ + +A +V 
Sbjct: 923  FEAPHAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRDLQGRPHGSGVHVAGLVT 982

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +Q+  T KG+   +VT  +         +
Sbjct: 983  QRQRPATAKGT--IFVTLEDEHGMINVIVW 1010


>gi|58583062|ref|YP_202078.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzae
            KACC10331]
 gi|71151846|sp|Q5GX78|DNAE2_XANOR RecName: Full=Error-prone DNA polymerase
 gi|58427656|gb|AAW76693.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzae
            KACC10331]
          Length = 1083

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/1050 (25%), Positives = 459/1050 (43%), Gaps = 93/1050 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + +   G++
Sbjct: 46   PTYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRVTGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL--DQGK 126
             I+G +  +                      VLLV  A GY ++  LV+           
Sbjct: 106  LIVGSEFTLIDGTRF----------------VLLVENAHGYPQVCGLVTTARRAASKGAY 149

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            +  R  +         G+  L           +       AE+     +++FG+R ++ +
Sbjct: 150  RLGRADVEAQFRDVAPGVFAL-----------WLPGVQPQAEQGA-WLQQVFGERAFLAV 197

Query: 187  QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            + HR  D   R   +  LA    +  VA+ +       +    D L A+ H+  +++   
Sbjct: 198  ELHREQDDGARLQVLQALAQQLGMTAVASGDVHMAQRRERIVQDTLTAIRHTLPLAECGA 257

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  + +L+ R  + +I+ D        V +A+RC+F +   +   PR +  E     
Sbjct: 258  HLFRNGERHLRTRRALGNIYPDALLQAA--VALAQRCTFDISKISYTYPRELVPEG---- 311

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR    AG+  R   G  AK       R+ ++ EL +IA  K+  +FL V D +
Sbjct: 312  HTPTSYLRQLTEAGIRKRWPGGITAK------VREDIEKELALIALKKYEAFFLTVQDVV 365

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A++ NI +  GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF  
Sbjct: 366  RFAREQNI-LCQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEH 424

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L         
Sbjct: 425  ERREEVLQYVYRKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNG 484

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 Q I +        LA+P ++++L +++ L    RH S H  G VI D PLS LVP
Sbjct: 485  ETPMEQRIEE----AGFDLANPLINKILLVTEHLRDHPRHLSQHVGGFVISDEPLSLLVP 540

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPF 603
            +     +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P 
Sbjct: 541  VENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYSIATLPG 600

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y
Sbjct: 601  EDLPTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHPY 660

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R+ G+E +    P ++ +LK T GV ++QEQVM++    + Y+ SEAD LRR+M    
Sbjct: 661  LRRRQGREDVSYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYTESEADNLRRSMAAWR 720

Query: 722  K-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            +  +M++ + R        G + T    IFE +  F  YGF +SHAA++A + Y + W+K
Sbjct: 721  RGGDMEQHRMRVRERMQGKGYASTFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLK 780

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDAR-----QFNIQIMPPSVNTPCVDFKVGDNRI 835
             H P  F    +  +        +  QDAR     +  ++++P  V     D  +   R 
Sbjct: 781  RHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVVHSDWDNTLVGGRP 840

Query: 836  Y-------------YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
            +               +  + G+    A+ I+ A   + F  + D C R     L+ +  
Sbjct: 841  WRSAADPGEQPAIRLGMRQVAGLSDVVAQRIVAARTQRAFADIGDLCLRA---ALDEKAC 897

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
             +L  AGAL     +R     ++  +                 +     G+  ++     
Sbjct: 898  LALAEAGALQGMVGNRNAARWAMAGV------------EARRPLL---PGSPEERPV--A 940

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            F   ++      + R +G     HP+ + +P +R+  I G  +      G+ + +A +V 
Sbjct: 941  FEAPHAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRDLQGRPHGSGVHVAGLVT 1000

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +Q+  T KG+   +VT  +         +
Sbjct: 1001 QRQRPATAKGT--IFVTLEDEHGMINVIVW 1028


>gi|76579902|gb|ABA49377.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia pseudomallei
            1710b]
          Length = 1253

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/754 (41%), Positives = 460/754 (61%), Gaps = 23/754 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  AG
Sbjct: 514  SDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAG 573

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q +
Sbjct: 574  IKPIAGCDVWITNHDD----------RDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYR 623

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+ L
Sbjct: 624  GRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIEL 683

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++   R
Sbjct: 684  QRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRR 743

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   + 
Sbjct: 744  QKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL- 802

Query: 305  KEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   +  GL+ RL         +      Y QRLDFE   I +M F GYFLIVA
Sbjct: 803  ---DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVA 859

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDID
Sbjct: 860  DFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDID 919

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLIP 
Sbjct: 920  FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF 979

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I    L+
Sbjct: 980  KPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT 1039

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +         
Sbjct: 1040 DFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWS 1099

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+D 
Sbjct: 1100 LAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL 1159

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 1160 IPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM 1219

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            GKK  EEM K +E F  GA+KNG+++  +  IF+
Sbjct: 1220 GKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFD 1253


>gi|17549021|ref|NP_522361.1| error-prone DNA polymerase [Ralstonia solanacearum GMI1000]
 gi|71151835|sp|Q8XRN1|DNAE2_RALSO RecName: Full=Error-prone DNA polymerase
 gi|17431271|emb|CAD17951.1| probable dna polymerase III (alpha chain) protein [Ralstonia
            solanacearum GMI1000]
          Length = 1075

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/1057 (25%), Positives = 447/1057 (42%), Gaps = 79/1057 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA   + ++ +  A    A+A+TD  ++   +     A  AG++
Sbjct: 12   PDYAELHCISNFTFLTGASHPHELVARAQAFGYRALALTDECSVAGTVRAHMAAKEAGLK 71

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             II             + +    P+     +VLL    +GY  L E +++  L    K  
Sbjct: 72   LII--------GSRFTVRDAQGEPW---LRLVLLAQDIDGYGNLCECITQARLA-APKGD 119

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             R+    L     E   +        I    +    +    +    +++FGDRL + L+ 
Sbjct: 120  YRLLADDLAAPAGELAHLRGMPHCLAILLPDYDPDPRHLLAQAQWCRQVFGDRLSMALEL 179

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D      V  ++   ++P+VAT +    S +    HDVL A+  S  +++     
Sbjct: 180  PLRHADDRHRGTVAAVSEQTDVPMVATGDVAMHSRQRKPLHDVLTAIRLSRPIAECGLAL 239

Query: 248  V-TPDHYLKNRSEMVSIFSDLPE----ALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              + +  ++ R  M   F    E     L  +VE+A  C F L   A   P  +  E   
Sbjct: 240  APSAEQAMRTR--MQLAFFYQGERGAQVLRRSVELASLCDFSLDEIAYEYPHEVVPEG-- 295

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +     L  + +AG   R  +   +K       R +LD EL +IA +++  +FL V D
Sbjct: 296  --QTPAGYLLAEVMAGAARRYGKDIPSK------VRAQLDEELALIAELRYEPFFLTVYD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+  +I +  GRGS A S   Y L IT+++P   + LF RFL+  R   PD D+DF
Sbjct: 348  VVRFARSQSI-LCQGRGSAANSAVCYCLGITEVNPESGNTLFARFLSRARNEPPDIDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL +    ++++ K     
Sbjct: 407  EHQRREEVIQYIYKKYGVTRTALAAALITYRTRSALRDVGRALGIDLGVIEQVAKAQAWW 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                   Q        +      P V R   + ++L G  RH S H  G VI    LS+L
Sbjct: 467  DGRHEFAQRAGQ----QGLDPESPLVQRWAGLIEQLRGFPRHLSQHVGGFVIAQGKLSRL 522

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------AQRGVKV 596
            VP+      +  V Q++   +E   L+K D L L  LT ++++LD L             
Sbjct: 523  VPIENAAMPERRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMLDALPGRRAHYGAP 582

Query: 597  D---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            D   +  +P +D  TY ++    T+G+FQ+ES   +  L  ++P    D++  V++ RPG
Sbjct: 583  DKLAMQHLPDEDTATYEMICRAETIGVFQIESRAQQSMLPRLRPRTYYDLVIQVAIVRPG 642

Query: 654  PIDNIV--VYNNRKN-----GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            PI   +   Y  R+        + +    P +  +L+ T GV I+QEQVM+IA    G++
Sbjct: 643  PIQGGMVHPYLQRREAVRNGNPDCVTYPGPEVKAVLERTLGVPIFQEQVMEIAMKAGGFT 702

Query: 707  LSEADVLRRAMGK-KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKS 764
              EAD LRR M   K K  + + + R +    +           +   +  FA+YGF +S
Sbjct: 703  ADEADRLRRDMAAWKRKGNLTQHQARLMKEMVEVRHYDPAFVEALCRQMEGFAEYGFPES 762

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAA +A ++Y ++++K H P  F AA +  +        +  Q+AR+  ++++P  V   
Sbjct: 763  HAAGFARLAYVSSFLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSRVRVLPADVTAS 822

Query: 825  CVDFKV--------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
              D  +        G   I   L  I+G+       I+ A A  PF S+ED   R    +
Sbjct: 823  AWDSTLHARPDGAGGQPDIRLGLNRIRGMRPAAGERIVVARAQAPFSSVEDLAHRAALDR 882

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             +  VL +     +    G+ R  L Q+L             +    ++    +      
Sbjct: 883  HDLSVLAAANALLS--LAGHRRQALWQTLAL-----------QEPGQDHALLRQARPVEA 929

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
             + L   S+    V    +   LG     HPL + +P L +M             G   R
Sbjct: 930  PLVLPAPSLGEEVV---ADYGSLGLSLQSHPLSLLRPRLERMRFVTAAALAGYRNGQLAR 986

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +V  +Q+  T KG+   +V+  +         +P
Sbjct: 987  ACGIVTVRQRPGTAKGT--IFVSIEDETGAVNVVLWP 1021


>gi|325925608|ref|ZP_08186993.1| DNA polymerase III, alpha subunit [Xanthomonas perforans 91-118]
 gi|325544008|gb|EGD15406.1| DNA polymerase III, alpha subunit [Xanthomonas perforans 91-118]
          Length = 1082

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/1051 (25%), Positives = 460/1051 (43%), Gaps = 96/1051 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G++
Sbjct: 46   PAYAELHCLSDFSFLRGASSAEQLFVRAQHCGYSALAITDECSLAGIVRGLEASRATGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                      VLLV  A GY +L  L++        K +
Sbjct: 106  LIVGSEFALVDGTRF----------------VLLVENAHGYPQLCGLITTARRA-ASKGA 148

Query: 129  VRICLSWLQEIGT---EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             R+  + +Q        G+  L           +   +   AE+     +++FG+R ++ 
Sbjct: 149  YRLGRAEVQAQFRDVAPGVFAL-----------WLPGAQPQAEQGA-WLQQVFGERAFLA 196

Query: 186  LQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            ++ HR  D   R   +  LA    +  +A+ +       +    D L A+ H+  +++  
Sbjct: 197  VELHREQDDVARLQVLQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRHTLPLAECG 256

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                   + +L+ R  + +I+ D    L+ TVE+A+RC+F +       PR +  +    
Sbjct: 257  AHLFRNGERHLRTRRALGNIYPD--GLLQATVELAQRCTFDISKLQYTYPRELVPQG--- 311

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                 + LR    AG+  R   G   K       R  ++ EL +IA +++  +FL V D 
Sbjct: 312  -HTPASYLRQLTEAGMRERWPDGVPKK------IRDDIENELALIAELEYEAFFLTVQDV 364

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+  +I +  GRGS A S   YAL IT +DP +  LL  RFL+  R   PD D+DF 
Sbjct: 365  VRFARSKDI-LCQGRGSSANSAVCYALGITSVDPSKTRLLISRFLSKARNEPPDIDVDFE 423

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L        
Sbjct: 424  HERREEVLQYVYAKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGN 483

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                  Q I +        LA+P ++++L ++  L    RH S H  G VI D PLS LV
Sbjct: 484  GETPMEQRIEE----AGFDLANPLINKILLVTDHLRDHPRHLSQHVGGFVISDEPLSLLV 539

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602
            P+     +D  + Q++   +E   L+K D L L  LT ++K+LD +   R     L+ +P
Sbjct: 540  PVENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRHRDYTLATLP 599

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  
Sbjct: 600  DEDAATYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHP 659

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  R+  K  I      ++ +L  T G+ ++QEQVM++  + +GY   EAD LRR+M   
Sbjct: 660  YLQRRKDKSLINYPSEGVEQILGPTLGIPLFQEQVMELV-IHAGYDPDEADKLRRSMAAW 718

Query: 721  IK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
             +  +M+  + R  +     G + +    IFE +  F  YGF +SHAA++A + Y + W+
Sbjct: 719  RRGGDMESHRVRIRALMEGKGYASSFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWL 778

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-----QFNIQIMPPSVNTPCVDFKVGDNR 834
            K H P  F    +  +        +  QDAR     +  ++++P  V     D  +   R
Sbjct: 779  KRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWDNALVGGR 838

Query: 835  IY-------------YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
             +               +  + G+    A+ I+ A   + F  + D C R     L+ + 
Sbjct: 839  PWRSAVDPGEQPAIRLGMRQVAGLSQVVAQRIVAARTQRAFADIGDLCLRA---ALDEKA 895

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
              +L  AGAL     +R     ++  +                 +     G+  ++    
Sbjct: 896  RLALAEAGALHGMVGNRNAARWAMAGV------------EARRPLL---PGSPEERPV-- 938

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
             F    +      + R +G     HP+ + +P +R+  I G  E      G+ + +A +V
Sbjct: 939  AFEAPRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRRHGSGVHVAGLV 998

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +Q+  T KG+   +VT  +         +
Sbjct: 999  TQRQRPATAKGT--IFVTLEDEQGMINVIVW 1027


>gi|188577888|ref|YP_001914817.1| error-prone DNA polymerase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|254777929|sp|B2SI43|DNAE2_XANOP RecName: Full=Error-prone DNA polymerase
 gi|188522340|gb|ACD60285.1| error-prone DNA polymerase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 1083

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/1050 (25%), Positives = 459/1050 (43%), Gaps = 93/1050 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + +   G++
Sbjct: 46   PTYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRVTGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL--DQGK 126
             I+G +  +                      VLLV  A GY ++  LV+           
Sbjct: 106  LIVGSEFTLIDGTRF----------------VLLVENAHGYPQVCGLVTTARRAASKGAY 149

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            +  R  +         G+  L           +       AE+     +++FG+R ++ +
Sbjct: 150  RLGRADVEAQFRDVAPGVFAL-----------WLPGVQPQAEQGA-WLQQVFGERAFLAV 197

Query: 187  QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            + HR  D   R   +  LA    +  VA+ +       +    D L A+ H+  +++   
Sbjct: 198  ELHREQDDGARLQVLQALAQQLGMTAVASGDVHMAQRRERIVQDTLTAIRHTLPLAECGA 257

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  + +L+ R  + +I+ D        V +A+RC+F +   +   PR +  E     
Sbjct: 258  HLFRNGERHLRTRRALGNIYPDALLQAA--VALAQRCTFDISKISYTYPRELVPEG---- 311

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR    AG+  R   G  AK       R+ ++ EL +IA  K+  +FL V D +
Sbjct: 312  HTPTSYLRQLTEAGIRKRWPGGITAK------VREDIEKELALIALKKYEAFFLTVQDVV 365

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A++ NI +  GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF  
Sbjct: 366  RFAREQNI-LCQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEH 424

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L         
Sbjct: 425  ERREEVLQYVYRKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNG 484

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 Q I +        LA+P ++++L +++ L    RH S H  G VI D PLS LVP
Sbjct: 485  ETPMEQRIEE----AGFDLANPLINKILLVTEHLRDHPRHLSQHVGGFVISDEPLSLLVP 540

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPF 603
            +     +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P 
Sbjct: 541  VENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYSIATLPG 600

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y
Sbjct: 601  EDLPTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHPY 660

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R+ G+E +    P ++ +LK T GV ++QEQVM++    + Y+ SEAD LRR+M    
Sbjct: 661  LRRRQGREDVSYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYTESEADNLRRSMAAWR 720

Query: 722  K-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            +  +M++ + R        G + T    IFE +  F  YGF +SHAA++A + Y + W+K
Sbjct: 721  RGGDMEQHRTRVRERMQGKGYASTFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLK 780

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDAR-----QFNIQIMPPSVNTPCVDFKVGDNRI 835
             H P  F    +  +        +  QDAR     +  ++++P  V     D  +   R 
Sbjct: 781  RHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVVHSDWDNTLVGGRP 840

Query: 836  Y-------------YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
            +               +  + G+    A+ I+ A   + F  + D C R     L+ +  
Sbjct: 841  WRSAADPGEQPAIRLGMRQVAGLSDVVAQRIVAARTQRAFADIGDLCLRA---ALDEKAR 897

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
             +L  AGAL     +R     ++  +                 +     G+  ++     
Sbjct: 898  LALAEAGALQGMVGNRNAARWAMAGV------------EARRPLL---PGSPEERPV--A 940

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            F   ++      + R +G     HP+ + +P +R+  I G  +      G+ + +A +V 
Sbjct: 941  FEAPHAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRDLQGRPHGSGVHVAGLVT 1000

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +Q+  T KG+   +VT  +         +
Sbjct: 1001 QRQRPATAKGT--IFVTLEDEHGMINVIVW 1028


>gi|299137470|ref|ZP_07030652.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX8]
 gi|298600875|gb|EFI57031.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX8]
          Length = 1072

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/1043 (27%), Positives = 492/1043 (47%), Gaps = 45/1043 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  +V L V S++S LEGA     ++ + A  + PA+AI D N ++ A  F       G+
Sbjct: 2    TDRYVELHVASAFSFLEGASQPEELMKRAAELEMPAMAILDRNGVYGAARFHTSGNRNGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQG--KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            +  IG ++ +       M             P + LL  +  GYQ L +L+++  + ++ 
Sbjct: 62   RAHIGAEIAVSSFGTRWMPPAWLPNQFVAEPPRLPLLCESQAGYQNLCQLITQFKMREKS 121

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYV 184
            K         L +    GL+ LTGG  GP+  A      +   K +    +++  + +YV
Sbjct: 122  KLEGSATWEDLHQYAA-GLVCLTGGEEGPLAAALAEGGEEAGRKAVERLVRIYGPNNVYV 180

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QRH    + +R    +++A +  LP++ATN   +    + E  D+  AV H T + Q 
Sbjct: 181  EVQRHYEREEEWRNQAAIRIACSLRLPVLATNGVRYAKAYEREVLDLFTAVRHHTELDQA 240

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R   +    +L+  SEM  +F D+P A EN++E++ R  F L       P++   E + 
Sbjct: 241  GRLLALNSQRHLRRASEMARLFHDVPNATENSIELSARLKFELDDLGYAFPKYPVPEDES 300

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +    ++ LR +   G+  R   G        +  +++++ EL++IAR+ F+GYFLIV D
Sbjct: 301  M----DSFLRKRVAEGIVRRY--GPKNDRALLERAKKQVEHELDLIARLGFAGYFLIVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +Q+ K  +I +  GRGS A S   YAL IT IDP+   LLFERFL+ +R   PD D+D 
Sbjct: 355  IVQFCKGRDILI-QGRGSAANSAVCYALEITVIDPVGMELLFERFLSENRGEWPDIDLDL 413

Query: 423  CQDR-RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
              +  R++ I+YV  +YG    A      + + K++ R+VG+AL      + RL  L+  
Sbjct: 414  PSEGQREQAIQYVYQRYGELGAAMTANVITYRGKSSAREVGKALGFDQESLGRLSSLVSQ 473

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                      IA   +     +  P + + LE+  +++ L RH   H+ G+VI    L+ 
Sbjct: 474  WEWRG-KNDTIAHSFQHAGFDIKHPRIAKYLELCMRIQDLPRHLGQHSGGMVICQGQLNS 532

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
            +VP+ R       V Q++ +     G+IK D LGL  + +L   L  + Q     VDL+ 
Sbjct: 533  VVPLERASMPGRTVVQWDKEDCADLGIIKVDLLGLGMMAVLHDCLKLIPQHYGEAVDLAQ 592

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P +D E Y +L    T+G+FQ+ES     +L    P    D++  V++ RPGPI    +
Sbjct: 593  LP-EDEEVYRVLQQADTVGMFQIESRAQMASLPRNYPTRFYDLVVQVAIIRPGPIVGKMM 651

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM- 717
              Y  R+  +E +   HP ++P+LK T GV ++QEQ+++IA  ++ ++ +EA+ LRRA+ 
Sbjct: 652  HPYMRRRQKREPVTYPHPSLEPVLKRTLGVPLFQEQLLRIAMTVANFTGAEAEELRRAVG 711

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             ++  E M   +    +G + NGI       I E ++ FA YGF +SHAA++A+I+Y +A
Sbjct: 712  MRRSWERMKNLEVNLRAGMAANGIDLKTQDTIVENISSFALYGFPESHAASFAMIAYASA 771

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            ++K  Y   F  A +  +           +DA++  ++I+P  V        + + R   
Sbjct: 772  YLKVRYLAAFTCAILNNQPMGFYAPAVLVKDAQRHGLRILPIDVQISDWPCTIEEERDGS 831

Query: 836  ---YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
                  L   KG+   +A  ++++   D PF S ED   RV    LNR+ L  L   GAL
Sbjct: 832  LSLRMGLGYAKGLSKQSAEMLVKSRDQDGPFRSAEDLALRVPI--LNRKGLMLLARIGAL 889

Query: 892  DCFG--YSRMQLLQSLDNIQK-YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            +       R   L  +D   K     + +N     E+         S  + L++ + E  
Sbjct: 890  NKIDAIEHRRDALWQVDRAGKLEGPLLRQNNEWLQED---------SRTLPLQQMTTE-- 938

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R  ++    G     HP+   +  L+   I   +E      G  +R A  V+++Q+  
Sbjct: 939  -ERLVSDYAGTGLTVGRHPMYYRRAALQSQRILSAQELKVYKDGEFVRTAGCVIARQRPG 997

Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031
            T KG    +++  +         
Sbjct: 998  TAKG--FIFLSMEDETGIANVIV 1018


>gi|325917073|ref|ZP_08179309.1| DNA polymerase III, alpha subunit [Xanthomonas vesicatoria ATCC
            35937]
 gi|325536737|gb|EGD08497.1| DNA polymerase III, alpha subunit [Xanthomonas vesicatoria ATCC
            35937]
          Length = 1083

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/1051 (25%), Positives = 465/1051 (44%), Gaps = 95/1051 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G++
Sbjct: 46   PDYAELHCLSDFSFLRGASSAEQLFARARDCGYSALAITDECSLAGIVRGLEASRATGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                      VLLV  A GY +L  L++        K +
Sbjct: 106  LIVGSEFTLVDGTRF----------------VLLVENAHGYPQLCGLITTARRA-ASKGA 148

Query: 129  VRICLSWLQEIGT---EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             R+  + ++        G+  L           +   +     +     +++FG+R ++ 
Sbjct: 149  YRLGRAEVEAQFRDVAPGVFAL-----------WLPGAQPQVGQGA-WLQQVFGERAFLA 196

Query: 186  LQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            ++ HR  D   R   +  LA    +  +A+ +       +    D L A+ H+  +++  
Sbjct: 197  VELHREQDDVARLQALQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRHTLPLAECG 256

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                   + +L+ R  + +I+ D    L+ TVE+A+RC+F +   +   PR +  E    
Sbjct: 257  AHLFRNGERHLRTRRALGNIYPDA--LLQATVELAQRCTFDISKISYSYPRELVPE---- 310

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +    + LR     G+  R   G   K       R+ ++ EL +IA  ++  +FL V D 
Sbjct: 311  EHTPTSYLRQLTEEGIRERWPDGISTK------VREDIEKELALIALKRYEAFFLTVQDV 364

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+   I +  GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF 
Sbjct: 365  VRFARSRQI-LCQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFE 423

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV++YV NKYG ER A   T    + K+A+RDV +A  +P  Q+  L        
Sbjct: 424  HERREEVLQYVYNKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGN 483

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                  Q I +        LA+P ++++L +++ L    RH S H  G VI D PLS LV
Sbjct: 484  GDTPMEQRIEE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSLLV 539

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602
            P+     ++  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P
Sbjct: 540  PVENAAMANRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYSIATLP 599

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  
Sbjct: 600  GEDAPTYKMIQHADTVGVFQIESRAQMAMLPRLKPAVFYDLVIEVAIVRPGPIQGDMVHP 659

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  R+ G+E++    P ++ +LK T GV ++QEQVM++    + Y+ SEAD LRR+M   
Sbjct: 660  YLRRRQGREEVNYPSPEVEDILKPTLGVPLFQEQVMELLMHAAEYTESEADNLRRSMAAW 719

Query: 721  IK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
             +  +M++ + R      K G +      IFE +  F  YGF +SHAA++A + Y + W+
Sbjct: 720  RRGGDMEQHRARVRERMQKRGYASAFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWL 779

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-----QFNIQIMPPSVNTPCVDFKVGDNR 834
            K H P  F    +  +        +  QDAR     +  ++++P  V     D  +   R
Sbjct: 780  KRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERARVEVLPVDVLHSDWDNTLVGGR 839

Query: 835  IY-------------YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
             +               +  + G+    A+ I+ A   + F  + D C R     L+ + 
Sbjct: 840  PWRSDADPGEQPAIRLGMRQVAGLSEVVAQRIVAARTQRTFADIGDLCLRA---ALDEKA 896

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
              +L  AGAL     +R     ++  +                 +     G+  ++    
Sbjct: 897  RLALAEAGALQGMVGNRNAARWAMAGV------------EARRPLL---PGSPEERPV-- 939

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            +F    +      + R +G     HP+ + +P +++  I G  +      G+ + +A +V
Sbjct: 940  EFEAPRAGEEILADYRSVGLSLRQHPMALLRPQMQQRRILGLRDLRGRRHGSGVHVAGLV 999

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +Q+  T KG+   +VT  +         +
Sbjct: 1000 TQRQRPATAKGT--IFVTLEDEHGMINVIVW 1028


>gi|284928809|ref|YP_003421331.1| DNA-directed DNA polymerase III PolC [cyanobacterium UCYN-A]
 gi|284809268|gb|ADB94973.1| DNA-directed DNA polymerase III PolC [cyanobacterium UCYN-A]
          Length = 873

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/811 (37%), Positives = 471/811 (58%), Gaps = 62/811 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L VHS+YSLL+GA  L+ ++D+      PAIA+TD   ++ A+E  +      I+P
Sbjct: 2   SFVGLHVHSAYSLLDGASQLDALVDRAIQLGMPAIALTDHGVMYGAIELIKVCKNKNIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +   D  +     K         V+L    +GY+ L +L +  +L   QGK  
Sbjct: 62  IIGNEMYVINGDITEKKRYKK------YHQVVLAKNTQGYKNLSKLTTISHLEGVQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L++    GLI+ +    G I +       Q A++    +KK+F +  Y+ 
Sbjct: 116 FSRPCINKELLEKYHD-GLIVTSACLGGEIPQKILSGDFQGAKEVAQWYKKIFANDFYLE 174

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR     + ++A    + ++ATN+S F S  D EAHD L+ +  + ++S + 
Sbjct: 175 IQDHGSTEDRIVNVSISKIAQDLNIKIIATNDSHFTSCYDVEAHDALLCIQTAKLISDEK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           R R +   YLK+  EM  +F D      + EA+ NT+E+A +      +  P +P F   
Sbjct: 235 RLRYSGTEYLKSIDEMKLLFRDHLDDDLIKEAINNTLEVANKIDTYHILGEPRIPDFPVP 294

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D+    ++ +R  ++ GL  RL   +I     +++Y+QRL++EL+++ +M FS YFL
Sbjct: 295 IGHDL----DSYVREISLQGLLERLNCKSI--NQVSEEYQQRLEYELDMLEKMGFSSYFL 348

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           +V D+I++A+ N IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 349 VVWDYIKYARDNEIPVGPGRGSAAGSLVAYSLKITNIDPIYHGLLFERFLNPERKSMPDV 408

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D DFC +RRDE+I+YV  KYG + VAQIITF  + +KA L+DV R L +PYS+ D++ K+
Sbjct: 409 DTDFCIERRDEMIKYVTKKYGEKNVAQIITFNRMTSKAVLKDVARVLDIPYSESDKMTKM 468

Query: 479 IPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           IP     P  L+ +  +      F++    DP V R L+++ ++EG  +    HAAG+VI
Sbjct: 469 IPVTRGKPTKLKVMVSNETPSPEFKDRYDQDPLVRRWLDMAIRIEGTNKTFGVHAAGVVI 528

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRG 593
               L ++VP+ ++      +TQ+ M+ +E  GL+K DFLGL+ LT +Q++ D +   R 
Sbjct: 529 SSESLDEIVPLQKN-NDGAVITQYYMEDLESLGLLKMDFLGLRNLTTIQRAADLIEKNRN 587

Query: 594 VKVD-------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
           +K+D                   +S +P D  +T+ LL      GIFQLESSGM+Q ++ 
Sbjct: 588 IKLDVEQLPTDERKALKELEQGKISKLPTDIEKTHKLLGDGELEGIFQLESSGMKQIVKD 647

Query: 635 MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           ++P  IEDI ++++LYRPGP+D   I  + NRK+GKE I     L++P+LKET  V++YQ
Sbjct: 648 LKPSGIEDISSILALYRPGPLDAGLIPKFINRKHGKEAIKYEDKLLEPILKETYAVLVYQ 707

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQ+M +AQ L+GYSL EAD+LRRAMGKK   EM+K ++ FI G+  NG+S+++A N+F+ 
Sbjct: 708 EQIMTMAQQLAGYSLGEADLLRRAMGKKKASEMEKHQKNFIDGSLNNGVSRSVAENLFQQ 767

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           + KFA+Y            +SY T  +   Y
Sbjct: 768 MVKFAEYC-----------LSYDTKVLTVEY 787


>gi|269795426|ref|YP_003314881.1| DNA polymerase III subunit alpha [Sanguibacter keddieii DSM 10542]
 gi|269097611|gb|ACZ22047.1| DNA polymerase III, alpha subunit [Sanguibacter keddieii DSM 10542]
          Length = 1117

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/1083 (26%), Positives = 476/1083 (43%), Gaps = 89/1083 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L  HS++S L+GA     +  +       A+A+TD + L+  + F++ A   G+ 
Sbjct: 11   PEYAELHAHSAFSFLDGANQPEELAAEAYRLGLTALALTDHDGLYGVVRFAEAARQLGLP 70

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I G +L +       +      P P    +++L    +GY+ L   ++  +L    K +
Sbjct: 71   TIFGAELHL-PDAVGTLDAPTGVPDPRSEHLLVLARGPQGYRNLSSAIAEGHLSTGRKGA 129

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN---SSQVAEKRLLTFKKLF-GDRLYV 184
                L  L        ++LTG   G +  A         + A  +L      F  D + V
Sbjct: 130  ADHSLEELGARADGQWLVLTGCRKGAVRSALGSGPTWDPRGAATQLDRLVATFGRDNVAV 189

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +      YD  R   +  LA+   + LVAT  + +    D +    L AV   + +   
Sbjct: 190  EVTSTGDPYDDERNEHLAALAHAARVDLVATTAAHYAHPRDADLAAALAAVRARSSLDDM 249

Query: 244  D-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            D      P  +L++  EM++  S  PEA+     +   C+F L + AP LP +       
Sbjct: 250  DGWLPGAPSAHLRSAGEMLARHSAHPEAVTAAARLGAECAFDLSLVAPNLPPYPVPAG-- 307

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                E   LR     G   R       +   A     ++D EL +I  + F GYFL+V D
Sbjct: 308  --HTEATWLRELVRRGALHRYGPRESERVPGA---YAQIDRELRIIEDLTFPGYFLVVYD 362

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++ + N I +  GRGS A S   YAL IT +D +   LLFERFL P+R   PD D+D 
Sbjct: 363  LVEFCRVNGI-LAQGRGSAANSAVCYALGITAVDAVAHGLLFERFLAPERDGPPDIDVDI 421

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI++V + +G    AQ+    S + ++A+RD  RAL     Q D   K I   
Sbjct: 422  ESQRREEVIQHVFDTFGRRHAAQVANVISYRPRSAVRDAARALGYDTGQQDAWSKQIERW 481

Query: 483  ----------------PAHPVSLQAIADDSRFRE-------------------------- 500
                                    A+    R R+                          
Sbjct: 482  GSLRPAPPSPEAVAAGMPEGKPYGALEQRERIRDPLVEPTARDDRAMAREGMWVKGGHAP 541

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
             R  +   D +++++++   L RH   H+ G+V+ DRP+ ++ P+         V Q++ 
Sbjct: 542  QRDTEDIPDAVVDLAERFLRLPRHLGIHSGGMVMCDRPVIEVCPVEWARMPGRTVLQWDK 601

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
            +    AGL+KFD LGL  LT L+ + + +    GV++ L  +P +D   Y LL    T+G
Sbjct: 602  EDCADAGLVKFDLLGLGMLTALRIAFEQVSTHEGVELTLHGLPQEDPGVYRLLCAADTIG 661

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPL 677
            +FQ+ES      L  +QPDC  DI+  V+L RPGPI   ++  Y  RK G+EK+  +HPL
Sbjct: 662  VFQVESRAQISTLPRLQPDCFYDIVIEVALIRPGPIQGNSVHPYIARKRGREKVTYLHPL 721

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGA 736
            ++  L +T GV ++QEQ+MQ++  L+ ++ +EAD LRRAM  K+  E+M+   ER +SG 
Sbjct: 722  LEKSLGKTLGVPLFQEQLMQMSIDLADFTPTEADALRRAMGSKRSTEKMEALHERLLSGM 781

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             K GI +     IF+ L  FAD+GF +SHA ++A + Y +AW+K H+P  F A  +  + 
Sbjct: 782  EKKGIDRVAGEEIFDKLKGFADFGFPESHAYSFAYLVYASAWLKVHHPEAFYAGLLAAQP 841

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTP----CVDFKVGDNR---IYYSLAAIKGVGTTT 849
                  +    DAR+ ++ ++ P +        V+   G  R   +   LA+++ V T  
Sbjct: 842  MGFYSPQSLVADARRHDVPVLRPDLLASQPQAAVEPAPGSARGLAVRLGLASVRTVTTEV 901

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A  ++       PF  L D   RV         LE+L  AGALDC G  R + L +   +
Sbjct: 902  AERLVAERTEHGPFLDLRDLARRVRLT---TAQLEALATAGALDCLGVERREALWAAGAL 958

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                         + + +     G  +    L   S   ++V    +    G     +P 
Sbjct: 959  ----------AQERPDTLPGVSVGVSAPM--LPGMSEVETAV---ADTWSTGVTTESYPT 1003

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
               +P L + G    EE      G  + +  +V  +Q+  T +G  + +++  +   +  
Sbjct: 1004 QYARPGLVRAGAITVEECRTAEEGRRVAVGGVVTHRQRPGTARG--VTFLSLEDETGQLN 1061

Query: 1029 ANF 1031
               
Sbjct: 1062 VIC 1064


>gi|329846730|ref|ZP_08262003.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19]
 gi|328844237|gb|EGF93805.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19]
          Length = 1075

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/1039 (25%), Positives = 455/1039 (43%), Gaps = 71/1039 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +V LQ  S +S L G  + +++  +  A    A+AI D N L   +     A   G++
Sbjct: 2    PDYVELQCASYFSFLRGCSAPDDLFAQAKALGMEALAIADRNTLAGIVRAHVAAKETGVR 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIGC                +       SI++      GY RL  L+S       GK +
Sbjct: 62   LIIGC----------------RLDLTDGMSILVYPVDRAGYGRLCRLLSLGKSRG-GKGA 104

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
              +  S +++   EGLI +                 ++   RL  FK++F DR Y+ L  
Sbjct: 105  CDLEWSDIEDFH-EGLIAIFIPDEAD----------ELCAVRLRRFKQVFADRAYMALTL 153

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS-QKDRP 246
            RHR  D  R  ++  LA+ H +P V TN+ L+   E    HDV+  + +   +    D  
Sbjct: 154  RHRQNDHMRLHELSNLAFKHRVPTVVTNDVLYHIHERAMLHDVVTCIRNRCTIDTMGDLR 213

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                D +LK+  EM  +FSD  +A+  T+EIA R  F L       P           + 
Sbjct: 214  HRYADRFLKSPEEMGRLFSDYRQAMARTIEIADRSRFSLAELEYQYPEEKLMSGMSAIEA 273

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+  + AG + R  +G   K        + L  EL++I R+ ++ YFL V   +Q+
Sbjct: 274  ----LKRLSWAGAKWRYPEGVPDK------VIKLLKHELDLIERLDYAPYFLTVNAIVQF 323

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A S   Y L +T +DP R  LLFERF++ +R   PD D+DF   R
Sbjct: 324  ARSKDI-LCQGRGSAANSCVCYVLGVTSVDPDRNDLLFERFISEERKEPPDIDVDFEHQR 382

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+++V   YG    A        + + ALRD  + L  P   +  L   I +  +  
Sbjct: 383  REEVMQWVFKTYGRNHAALTAVVTRFRTRGALRDTLKVLGFPEDTIKTLASSIRHWHSTG 442

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             S     +D+        D  +    EI   L  + R  S H  G V+    L +LVP+ 
Sbjct: 443  FS----EEDAAELNLNTKDRRLKLAFEIHLLLLDVPRQLSQHPGGFVLTHDRLDELVPIE 498

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                 D  V +++   I+    +K D L L  ++ ++++ D L +   + +D+S IP +D
Sbjct: 499  PARMKDRQVIEWDKDDIDAVKFMKVDCLALGMMSCMKRAFDLLGEHKGIHIDMSCIPPED 558

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
             +TY ++    T+G FQ+ES      L   +P    D++  V++ RPGPI  D +  Y  
Sbjct: 559  PKTYAMIRNADTIGTFQIESRAQMSMLPRTKPRTFYDLVIQVAIVRPGPIQGDMVHPYLR 618

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R  G E++    P +  +L +T GV ++QEQ M++  + +G++  +AD++RRA    K  
Sbjct: 619  RLEGLEEVTFPTPELAAILGKTLGVPLFQEQAMRVVIVCAGFTAGQADLVRRAQATFKKT 678

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +    +  I+G   NG ++  A+ + + L  F  YGF +SHA ++A+IS  +AWMK H
Sbjct: 679  GGIGPLAQDIINGMKGNGYTEEFALTLVKQLEGFGSYGFPESHAFSFAIISEASAWMKCH 738

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF------KVGDNRIY 836
            +P  FLAA +  +        +  +DA+   +++    VN    D       + G   + 
Sbjct: 739  HPDVFLAAILNSQPMGFYAPGQLIRDAKLHGVEVRWFCVNNSRWDCSLEPTERPGRFAVR 798

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CFG 895
                 +KG+ +     ++    D P+ S+ D   R    K     L  L  A   +  F 
Sbjct: 799  LGYRLVKGIRSQEIAEMILRRGDLPYKSVPDLWRRA---KTPVATLRKLARADVFEQAFK 855

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV--ENSSVRFE 953
             SR + L S+  ++  A  +         +    E G    +I                 
Sbjct: 856  VSRREALFSIRALRDDALPL--------FDSLLDETGRSLSEIDQPDMDFKRMTDGAEVV 907

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +   +GF    HP+   +  L++  I    E++ +     +++A MV  +Q+  +  G 
Sbjct: 908  EDYNQVGFTKGSHPVAFLRADLKERSIITCREAMTSKDKRYVQVAGMVNVRQRPGSANG- 966

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + ++T  + + +     +
Sbjct: 967  -VIFMTIEDESGDANIVVW 984


>gi|159026760|emb|CAO86641.1| dnaE [Microcystis aeruginosa PCC 7806]
          Length = 874

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/790 (39%), Positives = 468/790 (59%), Gaps = 51/790 (6%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+     QPAIA+TD   ++ A+E  +     GI+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPALIDRAIELGQPAIALTDHGVMYGAIELIKTCRNKGIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +   D        K         V+L    +GY+ L++L +   L   QGK  
Sbjct: 62  IIGNEMYVVNGDIEVNLRHRK------YHQVVLAKNTQGYKNLVKLTTISNLKGIQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    LQ+   EGLI+ +    G I +A   N+ ++A++    +KKLFGD  Y+ 
Sbjct: 116 FARPCINKELLQQYH-EGLIVTSACLGGEIPQAILANNRKLAKETAKWYKKLFGDDFYLE 174

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR    ++V++A    + +VATN+S F+S  D EAHD L+ +  + ++++  
Sbjct: 175 IQDHGSKEDRIVNVEIVKIAKELGIKVVATNDSHFISCYDVEAHDALLCIQTAKLITEDK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           R R +   YLK+  EM  +F D      + EA+ NT+E+A +       + P LP +   
Sbjct: 235 RLRYSGTEYLKSADEMRLLFRDHLPEDVIEEAINNTLEVAEKVEPYNIFNEPRLPNYPVP 294

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                    ++ +   A  GL  RL     ++      Y++RL++EL ++ +M FS YFL
Sbjct: 295 AG----HTADSYVEEIAWLGLLERLK--CPSRHEIEPVYKERLEYELKMLQKMGFSTYFL 348

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           +V D+I++A+ ++IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 349 VVWDYIKYARDHDIPVGPGRGSAAGSLVAYSLKITNIDPVHHGLLFERFLNPERKSMPDI 408

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D DFC +RRDE+I+YV  KYG   VAQIITF  + +KA L+DV R L +PY++ D++ K+
Sbjct: 409 DTDFCIERRDEMIQYVTEKYGEANVAQIITFNRMTSKAVLKDVARVLDIPYAESDKMAKM 468

Query: 479 IPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           IP     P  L+ +      +  F+E    +P V   L+++ ++EG  +    HAAG+VI
Sbjct: 469 IPVSRGKPTPLKVMISDETPEPAFKERYDTEPHVRHWLDMAIRIEGTNKTFGVHAAGVVI 528

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
             +PL ++VP+ ++      +TQ+ M+ +E  GL+K DFLGL+ LT L+K+ D + Q   
Sbjct: 529 SSQPLDEVVPLQKN-NDGAVITQYFMEDLESLGLLKMDFLGLRNLTTLKKTADLIKQNQG 587

Query: 594 VKVDLSLIPFDDH-------------------ETYHLLTTKGTLGIFQLESSGMRQALEG 634
           +++DL  +P D+                    +T+ LL      GIFQLESSGM+Q ++ 
Sbjct: 588 IEIDLDQLPLDERKALQIRAKGEHKKLPPDILKTHGLLEEGDLEGIFQLESSGMKQIVKE 647

Query: 635 MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           ++P  IEDI ++++LYRPGP+D   I ++  RK+G+E I   HPL++P+LKET  V++YQ
Sbjct: 648 LKPSGIEDISSILALYRPGPLDAGLIPLFIGRKHGREPIRYDHPLLEPILKETYAVLVYQ 707

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQ+M++AQ L+GYSL EAD+LRRAMGKK   EM KQ+E FI GA+KNG+ K IA N+FE 
Sbjct: 708 EQIMKMAQDLAGYSLGEADLLRRAMGKKKASEMQKQREMFIDGAAKNGVEKRIAENLFEQ 767

Query: 753 LAKFADYGFN 762
           +  FA+Y   
Sbjct: 768 MVNFAEYCLG 777


>gi|239830917|ref|ZP_04679246.1| DNA polymerase III, alpha subunit [Ochrobactrum intermedium LMG 3301]
 gi|239823184|gb|EEQ94752.1| DNA polymerase III, alpha subunit [Ochrobactrum intermedium LMG 3301]
          Length = 1078

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/1049 (24%), Positives = 438/1049 (41%), Gaps = 77/1049 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F  +   S++S L GA     ++ +  A     I I D N L   +             
Sbjct: 4    RFFEMAAASNFSFLCGASHPQELVLQAHALGLSGIGIADRNTLAGVVRAHAA-------- 55

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                  +   + + ++    +  F    P +V+       Y +L  L++        K  
Sbjct: 56   ----WKEFRDKSDFRLFIGCRLSFTDGTPDMVVYPRDRAAYGQLCRLLTEGKTRAATKGE 111

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
              +  S L     +  I +        DR  F +      K            +++ L  
Sbjct: 112  CHLEWSDLLFRARQFQIAVFPP---EDDRPDFADRLADIAKAA-------PGSVWLALAM 161

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    +  
Sbjct: 162  PHQGQDGRRAERIARFAAEANVPLIATNDVLYHHPDRRALQDVLTATRHYTTVFAAGQLL 221

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK   EM+ +F D PEA+  + + A   +F L       P           K 
Sbjct: 222  EKNAERHLKPPREMLRLFRDYPEAVAASADFAAPITFRLDELKYAYPDEPIPPG----KT 277

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L +    G         I         +  ++ EL +IA++++  YFL V D + +
Sbjct: 278  ARQHLHDLTWEGAARHYGADTI-----PPKVQALINKELALIAQLQYEPYFLTVYDIVNY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I +  GRGS A SV  + L IT ++P    LLFERF++ +R   PD D+DF  +R
Sbjct: 333  ARGEGI-LCQGRGSAANSVVCFCLGITGVNPTEVDLLFERFISAERQEPPDIDVDFEHER 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       
Sbjct: 392  REEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLTEDVTAALANTVWGISGGG 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+ 
Sbjct: 452  IDKQHI----RQAGLDPENPIIRRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIG 507

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VDLSL 600
                 D    +++   I++ GL+K D L L  LT ++K+LD + Q   +      + L+ 
Sbjct: 508  PAAMKDRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKALDLIHQHKPQLYGGEKLTLAN 567

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P +D   Y +L T  +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 568  LPREDKRVYDMLCTGDSLGVFQVESRAQMNMLPRLKPREFYDLVIEVAIVRPGPIQGDMV 627

Query: 659  VVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
              Y  R+N +E      P         +  +L +T+GV ++QEQ M+IA   + ++  EA
Sbjct: 628  HPYLRRRNKEEPSTLPSPAPEHGPPDELRQILGKTKGVPLFQEQAMRIAMEAAKFTPDEA 687

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LRRAM   +    +   +++ I G  + G  +T A N F  +  F +YGF +SHAA++
Sbjct: 688  NQLRRAMATFRKMGTIHTMEQKMIEGMVRRGYDRTFAENCFNQIKGFGEYGFPESHAASF 747

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  
Sbjct: 748  AHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNI 807

Query: 830  VGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            + +       +      I G        ++    + P+ ++ED   R+     +RR    
Sbjct: 808  LEETPDIRLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRLRL---DRRAFTL 863

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  A A       R   L ++  +            ++   +F     +   +    K  
Sbjct: 864  LADADAFGSLDIDRRAALWAVRRLP----------NDETLPLFRAAATSELAEEPRTKLP 913

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
               +S     +         GHPL   +  L   G+           G  +++A +V  +
Sbjct: 914  EMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVR 973

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG  + ++T  +         +P
Sbjct: 974  QRPGSAKG--VVFLTIEDETGIANIVVWP 1000


>gi|166366657|ref|YP_001658930.1| DNA polymerase III subunit alpha [Microcystis aeruginosa NIES-843]
 gi|166089030|dbj|BAG03738.1| DNA polymerase III alpha subunit [Microcystis aeruginosa NIES-843]
          Length = 874

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/790 (39%), Positives = 467/790 (59%), Gaps = 51/790 (6%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+     QPAIA+TD   ++ A+E  +     GI+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPALIDRAIELGQPAIALTDHGVMYGAIELIKTCRNKGIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +   D        K         V+L    +GY+ L++L +   L   QGK  
Sbjct: 62  IIGNEMYVVNGDIEVNLRHRK------YHQVVLAKNTQGYKNLVKLTTISNLKGIQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    LQ+   EGLI+ +    G I +A   N+ ++A++    +KKLFGD  Y+ 
Sbjct: 116 FARPCINKELLQQYH-EGLIVTSACLGGEIPQAILANNRKLAKETAKWYKKLFGDDFYLE 174

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR    ++V++A    + +VATN+S F+S  D EAHD L+ +  + ++++  
Sbjct: 175 IQDHGSKEDRIVNVEIVKIAKELGIKVVATNDSHFISCYDVEAHDALLCIQTAKLITEDK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           R R +   YLK+  EM  +F D      + EA+ NT+E+A +       + P LP +   
Sbjct: 235 RLRYSGTEYLKSADEMRLLFRDHLPEDVIEEAINNTLEVAEKVEPYNIFNEPRLPNYPVP 294

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                    ++ +   A  GL  RL     ++      Y++RL++EL ++ +M FS YFL
Sbjct: 295 AG----HTADSYVEEIAWLGLLERLK--CPSRHEIEPVYKERLEYELKMLQKMGFSTYFL 348

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           +V D+I++A+ ++IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 349 VVWDYIKYARDHDIPVGPGRGSAAGSLVAYSLKITNIDPVHHGLLFERFLNPERKSMPDI 408

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D DFC +RRDE+I+YV  KYG   VAQIITF  + +KA L+DV R L +PY++ D++ K+
Sbjct: 409 DTDFCIERRDEMIQYVTEKYGEANVAQIITFNRMTSKAVLKDVARVLDIPYAESDKMAKM 468

Query: 479 IPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           IP     P  L+ +      +  F+E    +P V   L+++ ++EG  +    HAAG+VI
Sbjct: 469 IPVSRGKPTPLKVMISDETPEPAFKERYDTEPHVRHWLDMAIRIEGTNKTFGVHAAGVVI 528

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
             +PL ++VP+ ++      +TQ+ M+ +E  GL+K DFLGL+ LT L+K+ D + Q   
Sbjct: 529 SSQPLDEVVPLQKN-NDGAVITQYFMEDLESLGLLKMDFLGLRNLTTLKKTADLIKQNQG 587

Query: 594 VKVDLSLIPFDDH-------------------ETYHLLTTKGTLGIFQLESSGMRQALEG 634
           + +DL  +P D+                    +T+ LL      GIFQLESSGM+Q ++ 
Sbjct: 588 IDIDLDQLPLDERKALQIRAKGEHKKLPPDILKTHGLLEEGDLEGIFQLESSGMKQIVKE 647

Query: 635 MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           ++P  IEDI ++++LYRPGP+D   I ++  RK+G+E I   HPL++P+LKET  V++YQ
Sbjct: 648 LKPSGIEDISSILALYRPGPLDAGLIPLFIGRKHGREPIRYDHPLLEPILKETYAVLVYQ 707

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQ+M++AQ L+GYSL EAD+LRRAMGKK   EM KQ+E FI GA+KNG+ K IA N+FE 
Sbjct: 708 EQIMKMAQDLAGYSLGEADLLRRAMGKKKASEMQKQREMFIDGAAKNGVEKRIAENLFEQ 767

Query: 753 LAKFADYGFN 762
           +  FA+Y   
Sbjct: 768 MVNFAEYCLG 777


>gi|256372382|ref|YP_003110206.1| DNA polymerase III, alpha subunit [Acidimicrobium ferrooxidans DSM
            10331]
 gi|256008966|gb|ACU54533.1| DNA polymerase III, alpha subunit [Acidimicrobium ferrooxidans DSM
            10331]
          Length = 1053

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/1030 (27%), Positives = 459/1030 (44%), Gaps = 52/1030 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  HSS+S L+G +   ++++  A     A+A+TD N L+    F + A   G+ P++
Sbjct: 14   VELHAHSSFSFLDGVVDPEDLVEAAAVAGYRALALTDHNGLYGVPRFLEAARRVGVVPLV 73

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +L +        T +     P    +V+L ++ EGY+ L  +++  ++    K    +
Sbjct: 74   GAELTLAT-----TTPRAGATDPEGEHLVVLAASPEGYRALSRVIATGHMRTGEKGRFDL 128

Query: 132  CLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
             +  L E   + G  +L G    P  RA        AE+ + +  + FGD L + L    
Sbjct: 129  TIDDLAEAAPSGGWFVLAGWRKSPPGRALAHAGPSAAERSVRSLWERFGDALVLELVDTL 188

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLS-EEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D  R   +  +   H LP+VAT     +       A       A  T+         
Sbjct: 189  DPADTVRNDVLAAIGAHHGLPVVATQAVHAIDVRTQRAAVVAAAIRARRTLGELDGYLPG 248

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                 L+    + + F   P  ++  VE+A RC+F + + AP LPR +     D    ++
Sbjct: 249  AGPPVLRPARALRARFGRYPGVVDAAVELAARCAFNVDLVAPGLPRDVVAMGVD----DD 304

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L          R    A  +   A    +++D EL+VI  + F+GYFL+V D + +  
Sbjct: 305  EALVALVAERAPRRYGPRAAPRIPGA---WEQIDHELDVIRSLGFAGYFLVVTDIVDFCV 361

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I    GRGS A S   YAL IT++DP+   LLFERFL+P+R   PD D+D    RR+
Sbjct: 362  REGI-YCQGRGSAANSAVCYALGITNVDPVALGLLFERFLSPERDGPPDIDVDIESRRRE 420

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YV  +YG  R AQ+ +  + +A++ALRD  R   +  + +    K + +  +   S
Sbjct: 421  EVIQYVYTRYGRARAAQVASVITYRARSALRDSARVFGVDQATLAAWSKGVEHRGSVARS 480

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            L       R     L  P+V  + E++  LEG  RH   H  G+V+ DRP+  + P    
Sbjct: 481  LAERDGAGR---PLLEVPAV--IAEVASVLEGAPRHLGVHVGGMVLCDRPIVDVCPTEWA 535

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
                  V Q++     + GL+KFD LGL  L  + + +D + +R            D   
Sbjct: 536  RAEGRSVLQWDKDDCARMGLVKFDLLGLGMLEAIHEMVDLVRERVGVEVDIATLEQDPAV 595

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKN 666
            Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI       Y  R+ 
Sbjct: 596  YEMLARADSVGVFQVESRAQMATLPRLRPSRFYDLVVEVALIRPGPIQGGSVHPYLRRRA 655

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEM 725
            G+E +V  HPL +  L +T GV ++QEQ+MQ+A  ++G+S +EAD LR+AM  K+    M
Sbjct: 656  GEEPVVYPHPLAERALAKTLGVPLFQEQLMQLAMDVAGFSAAEADELRQAMGAKRSSARM 715

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             +  +R ++G +  G+       +   L  FA++GF +SHAA++A + Y +AW K HYP 
Sbjct: 716  ARLHDRLMAGMAARGVDPAAREQVVTQLEAFANFGFPESHAASFAWLVYVSAWFKVHYPA 775

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLAA 841
             F A  +  +       +   +DAR+  + ++ P V        V    G+  +   L A
Sbjct: 776  AFYAGLLRAQPMGFWSPQTLVRDARRHGVGVLGPDVTRSSARADVVVRDGEQLLALGLDA 835

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            ++G+   TA  I+      PFDSL D   RV+        +  L  AGAL     S  + 
Sbjct: 836  VRGIAAATASSIVAMR---PFDSLLDLVQRVELT---PEQIRRLAGAGALRALEPSGQRA 889

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            +   D +          R ++  +                 F   +   R   E   LG 
Sbjct: 890  IWFADEL---------ARRHRMLDGLGFPSSE-------PVFPALDPRERAALEVDALGL 933

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
                HP+   +  L  +G+   ++  +   G  +R+A  V  +Q+  T +G  I ++   
Sbjct: 934  LVGDHPMAFVRERLSTLGVVRADQLASQRHGRRVRVAGTVTHRQRPGTARG--IVFMNLE 991

Query: 1022 EPAKEYEANF 1031
            +         
Sbjct: 992  DETGLVNVLV 1001


>gi|67921905|ref|ZP_00515421.1| DNA polymerase III alpha subunit:Protein splicing (intein) site
           [Crocosphaera watsonii WH 8501]
 gi|67856121|gb|EAM51364.1| DNA polymerase III alpha subunit:Protein splicing (intein) site
           [Crocosphaera watsonii WH 8501]
          Length = 880

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/827 (37%), Positives = 475/827 (57%), Gaps = 62/827 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  LN ++D+    + PAIA+TD   ++ A+E  +      I+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLNALIDRALELEMPAIALTDHGVMYGAIELIKVCRNKSIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +   D  +               V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62  IIGNEMYVINGDIKEKK------KYKKYHQVVLAKNTQGYKNLVKLTTISHLEGMQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L+E   EGLI+ +    G I +       + A+     ++KLF D  Y+ 
Sbjct: 116 FARPCINKELLEEYH-EGLIVTSACLGGEIPQRLLAGDFKEAKAVAKRYQKLFKDDFYLE 174

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR   + + ++A   ++ +VATN+S F+S  D EAHD L+ +    +++ + 
Sbjct: 175 IQDHGYVQDRIVNTGIAKIARDLDIKIVATNDSHFISCYDVEAHDALLCIQTRKLITDEK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           R R +   YLK+  EM  +F D      + EA+ NT+E+A +      +  P +P +   
Sbjct: 235 RLRYSGTEYLKSADEMRLLFRDHLPDEIIEEAINNTLEVAEKIEPYKILGEPRIPNYPVP 294

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                    ++ +   A  GL  RL     ++     DYR+RL++EL ++ RM FS YFL
Sbjct: 295 AG----HNPDSFVEEIAWDGLLTRLK--CRSRSEIPDDYRERLEYELKMLQRMGFSTYFL 348

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           +V D+I++A+ N IPVGPGRGS AGS+ AY L IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 349 VVWDYIKYARDNGIPVGPGRGSAAGSLVAYCLKITNIDPVHHGLLFERFLNPERKSMPDV 408

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D DFC +RRDE+I+YV  KYG   VAQIITF  + +KA L+DV R L +PY++ D++ K+
Sbjct: 409 DTDFCIERRDEMIQYVTRKYGEANVAQIITFNRMTSKAVLKDVARVLNIPYAESDKMTKM 468

Query: 479 IPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           IP     P  L+ +  D      F+E    DP+V R ++++ ++EG  +    HAAG+VI
Sbjct: 469 IPVSRGKPAKLKVMVSDKTPTPEFKERYDNDPTVHRWVDMAIRIEGTNKTFGVHAAGVVI 528

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
              PL Q+VP+ ++      +TQ+ M+ +E  GL+K DFLGL+ LT +Q++ D + Q + 
Sbjct: 529 SSEPLDQVVPLQKN-NDGAVITQYYMEDLESLGLLKMDFLGLRNLTTIQRTADLIKQNKR 587

Query: 594 VKVDLSLIPFDD-------------------HETYHLLTTKGTLGIFQLESSGMRQALEG 634
           V++DL  +P D+                    +TY LL      GIFQLESSGM++ ++ 
Sbjct: 588 VELDLDQLPLDERKALEIIAKGTEKRLPPDVQKTYKLLEKGDLEGIFQLESSGMKEIVKN 647

Query: 635 MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           ++P  IEDI ++++LYRPGP+D   I  + NRK+G+E IV  H L++P+LKET  V++YQ
Sbjct: 648 LKPSGIEDISSILALYRPGPLDAGLIPKFINRKHGREDIVYQHKLLEPILKETYAVLVYQ 707

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQ+M++AQ L+GYSL EAD+LRRAMGKK   EM K +E FI G++KNG+S+ IA ++FE 
Sbjct: 708 EQIMKMAQDLAGYSLGEADLLRRAMGKKKISEMTKHREIFIDGSTKNGVSQAIAEDLFEQ 767

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
           + KFA+Y            +SY T  +   Y   ++   +   ++  
Sbjct: 768 MIKFAEYC-----------LSYDTEILTVEYGAMYIGKIVEENINCT 803


>gi|124266725|ref|YP_001020729.1| DNA polymerase III subunit alpha [Methylibium petroleiphilum PM1]
 gi|124259500|gb|ABM94494.1| DNA polymerase III, alpha subunit [Methylibium petroleiphilum PM1]
          Length = 1099

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/1065 (24%), Positives = 442/1065 (41%), Gaps = 90/1065 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---QKACAA 65
            P++  L   S++S L GA     ++++ A     AIAITD  ++   +      ++    
Sbjct: 28   PAYAELHCRSNFSFLTGASHPQELVERAAQLGYAAIAITDECSVAGVVRAHAALKRLREN 87

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY-LLDQ 124
            G  P+    +  +       T  G         +VLL    EGY ++  L++       +
Sbjct: 88   GNPPLPALIIGSEFTLAASPTAPG-------CRLVLLAKNREGYAQICGLITLGRGRSAK 140

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G   + +        G      +    +  I R    +++ +A+ R        G+R  +
Sbjct: 141  GHYQLSVDDLDALLAGQGHAAGVPDCLALLIPRRDEPHATLLAQAR--WLAGRCGERASI 198

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             ++  R   D     +++  +    LPL A  + L          D L A+     V+  
Sbjct: 199  AVELLRWADDESFVERLLDASAASGLPLAAAGDVLMHVRSRKPLQDTLTAIRLKRRVADC 258

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                    + +L++R  +  +    PE L+ +V++AR C F L+      P  I    + 
Sbjct: 259  GYALMRNAEQHLRSRLALAQLCR--PEWLQRSVDLARACDFSLEQLKYEYPDEIVPAGE- 315

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                  + LR     G  VR   G           + +++ E  +I R ++  +FL V D
Sbjct: 316  ---TASSHLRRLTEEGACVRYPGGV------PGMVQAQIEHEFALIFRKRYEAFFLTVHD 366

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+   I +  GRGS A S   Y L IT++DP +  LLFERF++ +R   PD D+DF
Sbjct: 367  VVRFARSEGI-LCQGRGSAANSAVCYCLGITEVDPTQTPLLFERFISEERGEAPDIDVDF 425

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+EVI+Y+  KYG  R A      + + + A+R+VG+AL +   ++DRL K     
Sbjct: 426  EHERREEVIQYIYGKYGTHRTALAAALATYRVRGAVREVGKALGLDGQRIDRLAKSHQWF 485

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              H      + +     +A    P   + L +S  L G  RH S H  G VI    LS+L
Sbjct: 486  DGHEALPARLVEAGFDPDA----PVTRQWLALSAALIGFPRHLSQHVGGFVIARDALSRL 541

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--------- 593
            VP+      D  V Q++   +E  GL+K D L L  L+ L+++L  +             
Sbjct: 542  VPIENAAMKDRRVIQWDKDDLESLGLLKVDVLALGMLSALKRALALITDWRGPPPGANGG 601

Query: 594  ----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                    +  IP DD  TY ++    T+G+FQ+ES   +  L  ++P    D++  V++
Sbjct: 602  APISPSWRMQDIPRDDIATYEMIQEADTVGVFQIESRAQQSMLPRLKPSEFYDLVVQVAI 661

Query: 650  YRPGPIDNIVVY-------NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
             RPGPI   +V+         R+  +         ++  L+ T GV I+QEQVMQI  + 
Sbjct: 662  VRPGPISGGMVHPYLKQRDLQRRGLRPPPAYP--ALEQALERTLGVPIFQEQVMQICMIA 719

Query: 703  SGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            + +S  +AD LRRAM   K K  + +  +R +    +    +  A  IF+ +  F +YGF
Sbjct: 720  ADFSGGDADELRRAMAAWKRKGGLQQFHQRIVGRMVEKNYDREFAERIFQQIKGFGEYGF 779

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SHA ++A+++Y +AW+K H P  FLAA +  +        +  QDAR+  +++ P  V
Sbjct: 780  PESHAYSFALLAYLSAWLKCHEPAIFLAALLNSQPMGFYAPSQLVQDARRHAVEVRPVDV 839

Query: 822  NTPCVDFKVG--------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
                 D  +                  +   L  + G     A  I+ A A   F SL+D
Sbjct: 840  GHSGWDCTLEPASPGSTPCAARSLQPAVRLGLRLVSGFSEAAADRIVAARAVSTFASLDD 899

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
               R        +VL              +R   LQSL   ++   W    +  +   + 
Sbjct: 900  LARRAGLDPQALQVL--------------ARADALQSLAGHRRQQAWHASGQPRRTALLA 945

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                    D + L        +     +          HPL + +P L + G +   E  
Sbjct: 946  GATH--REDPLVLPAPPE---AEEITLDYASTQLTLRRHPLALLRPRLVQRGWRNARELG 1000

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A   G  +    +VV +QQ +T KG+   +VT  +         +
Sbjct: 1001 ALKDGCRVWACGIVVGRQQPETAKGT--IFVTLEDETGSVNVIVW 1043


>gi|78046782|ref|YP_362957.1| DNA polymerase III alpha chain protein [Xanthomonas campestris pv.
            vesicatoria str. 85-10]
 gi|123585634|sp|Q3BWA6|DNAE2_XANC5 RecName: Full=Error-prone DNA polymerase
 gi|78035212|emb|CAJ22857.1| DNA polymerase III alpha chain protein [Xanthomonas campestris pv.
            vesicatoria str. 85-10]
          Length = 1082

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/1051 (25%), Positives = 463/1051 (44%), Gaps = 96/1051 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G++
Sbjct: 46   PAYAELHCLSDFSFLRGASSAEQLFVRAQHCGYSALAITDECSLAGIVRGLEASRATGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                      VLLV  A GY +L  L++        K +
Sbjct: 106  LIVGSEFALVDGTRF----------------VLLVENAHGYPQLCGLITTARRA-ASKGA 148

Query: 129  VRICLSWLQEIGT---EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             R+  + +Q        G+  L           +   +   AE+     +++FG+R ++ 
Sbjct: 149  YRLGRAEVQAQFRDVAPGVFAL-----------WLPGAQPQAEQGA-WLQQVFGERAFLA 196

Query: 186  LQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            ++ HR  D   R   +  LA    +  +A+ +       +    D L A+ H+  +++  
Sbjct: 197  VELHREQDDVARLQVLQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRHTLPLAECG 256

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                   + +L+ R  + +I+ D    L+ TVE+A+RC+F +       PR +  +    
Sbjct: 257  AHLFRNGERHLRTRRALGNIYPD--GLLQATVELAQRCTFDISKLQYTYPRELVPQG--- 311

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                 + LR    AG+  R   G   K       R  ++ EL +IA +++  +FL V D 
Sbjct: 312  -HTPASYLRQLTEAGMRERWPDGVPKK------IRDDIENELALIAELEYEAFFLTVQDV 364

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+  +I +  GRGS A S   YAL+IT +DP +  LL  RFL+  R   PD D+DF 
Sbjct: 365  VRFARSKDI-LCQGRGSSANSAVCYALSITSVDPSKTRLLISRFLSKARNEPPDIDVDFE 423

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L        
Sbjct: 424  HERREEVLQYVYAKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGN 483

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                  Q I +        LA+P ++++L ++  L    RH S H  G VI D PLS LV
Sbjct: 484  GETPMEQRIEE----AGFDLANPLINKILLVTDHLRDHPRHLSQHVGGFVISDEPLSLLV 539

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602
            P+     +D  + Q++   +E   L+K D L L  LT ++K+LD +   R     L+ +P
Sbjct: 540  PVENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRHRDYTLATLP 599

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  
Sbjct: 600  DEDAATYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHP 659

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  R+  K  I      ++ +L  T G+ ++QEQVM++  + +GY   EAD LRR+M   
Sbjct: 660  YLQRRKDKSLINYPSEGVEQILGPTLGIPLFQEQVMELV-IHAGYDPDEADKLRRSMAAW 718

Query: 721  IK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
             +  +M+  + R  +     G + +    IFE +  F  YGF +SHAA++A + Y + W+
Sbjct: 719  RRGGDMESHRLRIRALMEGKGYASSFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWL 778

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-----QFNIQIMPPSVNTPCVDFKVGDNR 834
            K H P  F    +  +        +  QDAR     +  ++++P  V     D  +   R
Sbjct: 779  KRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWDNTLVGGR 838

Query: 835  IY-------------YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
             +               +  + G+    A+ I+ A   + F  + D C R     L+ + 
Sbjct: 839  PWRSAADPGEQPAIRLGMRQVAGLSQVVAQRIVAARTQRAFADIGDLCLRA---ALDEKA 895

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
              +L  AGAL     +R             A+WV      +   +     G+  ++    
Sbjct: 896  RLALAEAGALHGLVGNR-----------NAARWVMAGVEARRPLL----PGSPEERPV-- 938

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
             F    +      + R +G     HP+ + +P +R+  I G  E      G+ + +A +V
Sbjct: 939  AFEAPRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRRHGSGVHVAGLV 998

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +Q+  T KG+   +VT  +         +
Sbjct: 999  TQRQRPATAKGT--IFVTLEDEQGMINVIVW 1027


>gi|291300434|ref|YP_003511712.1| DNA polymerase III subunit alpha [Stackebrandtia nassauensis DSM
            44728]
 gi|290569654|gb|ADD42619.1| DNA polymerase III, alpha subunit [Stackebrandtia nassauensis DSM
            44728]
          Length = 1105

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/1048 (27%), Positives = 461/1048 (43%), Gaps = 83/1048 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS +S L+GA S  +++ +        +AITD + L+ A+ FSQ A    +  
Sbjct: 62   GYAELHAHSYFSFLDGASSPEDLVTEALRLGLSGLAITDHDGLYGAVRFSQAAKDTSLST 121

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + G +L + +        +   P P+   ++ L     GY +L   +    L    K   
Sbjct: 122  VYGAELSLGLSGE-----RTGVPDPSGTHLLTLARGPNGYAKLSATIGNAQLAGGQKGLP 176

Query: 130  RI-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQ 187
                L  +     + +++LTG   GP+ RA   +      + L   K LFG   + V L 
Sbjct: 177  DYGSLEDVAAALRDEVLVLTGCRKGPVRRA-LADGPDAVRRELERLKHLFGPEGVAVELT 235

Query: 188  RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
             HR + D      +  LA   +LP+VATNN  +     +    V+ A+  +  + + D  
Sbjct: 236  DHRAFVDTDHNQLLFDLATDLDLPVVATNNVHYARAARHRLSQVMSAIRANLPLEELDGW 295

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                P   L + SEM   F+  P A+ NTV +    +F L + AP LP F   +  D   
Sbjct: 296  LPAAPVARLCSPSEMAERFAPFPGAVANTVRLTGELAFDLDLIAPALPPFPVPDGHD--- 352

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E + LR  A  G  +RL   A  +    + YR RL+ EL++I  + F GYFLIV D + 
Sbjct: 353  -EASWLRELAREGA-LRLYGTAAER---PEAYR-RLEHELDIITNLGFPGYFLIVRDIVG 406

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            + ++N I V  GRGS   SV  Y L IT +DP+R++LLFERF++P R   PD D+D    
Sbjct: 407  FCEENRILV-QGRGSAVTSVVCYCLGITAVDPVRYNLLFERFMSPIREGPPDIDLDIEAR 465

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV  KYG    AQ+    S + ++A RDV  AL     Q+D      P     
Sbjct: 466  RREEVIQYVFTKYGRTYAAQVANVISYRRRSATRDVATALGHSPGQIDAWSANSPRRGGP 525

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +                 D     +   + +L G  RH   H+ G+VI DRP+ ++VP+
Sbjct: 526  AL-----------------DELPTDVGTYAGQLLGAPRHLGIHSGGMVICDRPVIEVVPV 568

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                  +  V Q++      AGL+KFD LGL  LT L ++ D         +DL  +   
Sbjct: 569  EHARMENRTVLQWDKDDCADAGLVKFDLLGLGMLTALHEAADLANTHYATGIDLKKLAPT 628

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYN 662
            D + Y ++    ++G FQ+ES    Q    ++ + + D+   ++L RPGPI       Y 
Sbjct: 629  DPDVYAMIHAGDSVGTFQIESRAQIQLAPRLRAENLHDLAVQIALVRPGPIQGGAVHPYV 688

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKI 721
             R+ G+E I   HP ++  LK T GV ++QEQ+M +A   +G+S +EAD LR+AM  K+ 
Sbjct: 689  RRRRGEEPIEYPHPTMEAALKRTLGVPLFQEQMMALASDCAGFSAAEADELRQAMGAKRS 748

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E M + K RF++GA+ N I+  +A +++  L  F+ YGF +SHA ++A I+Y +A++K 
Sbjct: 749  VERMQRLKSRFLTGAAANDITGPLADDLWSRLEAFSGYGFPESHAISFAYIAYASAYLKR 808

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR------- 834
            +YP  FL   +  +      +     DAR+  + +    +N       +           
Sbjct: 809  YYPAAFLVGLIRAQPMGFYSVNTLIADARRHGVTVHAVHINHSSATTTLDQKGAPALPET 868

Query: 835  -----------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                       +   L  I+G+ T TA  I+     +P+  +     R +        LE
Sbjct: 869  TPATWGAQGPTVRLGLDQIRGINTETAERIV---RGQPYTDISQLARRAEITTT---QLE 922

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            +L  +GAL  FG +R Q L +               T           G  + ++T    
Sbjct: 923  NLATSGALADFGLTRRQALWTAAPAAANTPDTLDGTTTLTP---PTLPGMSAAELTAANL 979

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
               NSS              + HP+   +  L   G             + + +  +V  
Sbjct: 980  HTTNSSP-------------TTHPITHIRHQLAAHGAIPIHLLSTMPDKSRVTIGGLVTH 1026

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +Q  +T  G  + ++   +         
Sbjct: 1027 RQAPETAHG--VLFLNLEDETGHANIVC 1052


>gi|323342047|ref|ZP_08082280.1| DNA-directed DNA polymerase III alpha subunit [Erysipelothrix
            rhusiopathiae ATCC 19414]
 gi|322464472|gb|EFY09665.1| DNA-directed DNA polymerase III alpha subunit [Erysipelothrix
            rhusiopathiae ATCC 19414]
          Length = 1030

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/1026 (32%), Positives = 534/1026 (52%), Gaps = 56/1026 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL V S YSLL+G + +  I +K   ++  +IA+TD + LF AL+F   A    I+PI 
Sbjct: 12   THLMVRSHYSLLKGMMPVELICEKAKHNESKSIALTDRHVLFGALDFYDAARKHHIKPIY 71

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ I                 +    ++L  T EGYQ LI L   +       ++  +
Sbjct: 72   GMEITI-------------LEDESYYDSLVLARTNEGYQGLIHLSYLLSKQAYISEADVV 118

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
                        LI +     GP ++     +       +   KK+F    Y+ L     
Sbjct: 119  PFE-------SELIFIAYSEQGPFEKGMLSKNLDEVANTMERLKKMFS-YFYIGLSHQES 170

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G+      Q+ Q+A   E+  VA     + +++D EA   L A+  ST +  K     +P
Sbjct: 171  GFFSNVNDQLRQMAVLREIECVALPKVYYENKDDEEAFRALQAIDKSTYLEDKT-LVSSP 229

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            +    +  +   ++++   +L +T  IA  C+  +      LP F   +    +   +  
Sbjct: 230  NRNFISDDDFKVLYTEAELSLTDT--IAEMCNVSIMNLKTELPEFETHQ----EVSNKVF 283

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L   +  GL+ RL      K      YR+RL++EL +I  M F+ YFLIV D I++AKK 
Sbjct: 284  LEQLSHFGLKRRLNNSVPEK------YRERLNYELKIINEMNFTDYFLIVYDVIRYAKKA 337

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I VGPGRGS AGS+ AY L I +IDP+ + LLFERFLNP+R+SMPD DIDF  D+R  V
Sbjct: 338  GIYVGPGRGSSAGSLVAYCLGIVEIDPIEYDLLFERFLNPERVSMPDIDIDFPDDKRQYV 397

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I YV+NKYG + VA I+TFG+L+A+ A RD  R LQ+P  +VD++ KLI           
Sbjct: 398  IDYVRNKYGDDYVAHIVTFGTLKARQAFRDTARVLQVPIRKVDQVSKLIDPMMGLR---D 454

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +SRF+    ++  + +  E++ K+EG+ RH STHAAGIV+  +PL  +VP+ + + 
Sbjct: 455  NYNKNSRFKSLIQSEDLLKKTFELACKIEGMPRHTSTHAAGIVLSKKPLDVVVPVIQ-LD 513

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
            S+    Q+ M  +E  GL+K DFLGL+ LT++      + +     D+  IP DD +TY 
Sbjct: 514  SETKAVQYEMSHLESIGLVKIDFLGLRNLTIIDNISRQINE-SEAFDIMSIPLDDQKTYE 572

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L++   T+G+FQLES GM+  L+ ++P    DI+  V+L+RPGP++NI +Y   ++  EK
Sbjct: 573  LISRAETVGVFQLESDGMKALLKKVKPHKFSDIVDTVALFRPGPMENIPLYLENRDHPEK 632

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  IH  +  + + T G++IYQEQ+MQ+AQ+++G+SL+ AD+LR+AMGKK  +E+D  K 
Sbjct: 633  VKYIHDDLKRITESTNGILIYQEQIMQVAQIMAGFSLARADILRKAMGKKNAKELDGLKT 692

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G    G  +T A  +F L+ KFA+YGFNKSH+ AY +I+YQ +++K +YP  F   
Sbjct: 693  EFIQGCIDKGHKETFAEELFSLIYKFANYGFNKSHSVAYGLIAYQLSYLKANYPHLFYTY 752

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +T  + +  K +++  + R+  + + P ++      + +    I      IKG+  +  
Sbjct: 753  LLTSVIGSEVKTRQYIDECRRRKVDLRPVNLEQSRNSYTLEGYAIRLPFTVIKGISKSIG 812

Query: 851  RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              I  E   + P+ +  +  SR++   + +   E L+ AGA D     R+ ++ SL+   
Sbjct: 813  TKIQNEVHDNGPYLNYYNAISRLNLVGIKKNQFELLIQAGAFDYLNSDRLSMIASLEEAL 872

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHP 967
            +YA  + +   +   ++         D I+   F+V  EN      +E  VLGFYFS HP
Sbjct: 873  RYAN-IIRVEKDGQSSL-------NMDLISEPIFTVVSENRRQVLNDELVVLGFYFSEHP 924

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
                K   +K       E    +R    R+ AMV   +  +T+KG ++ ++  S+     
Sbjct: 925  TLRLK---KKHESDSLIEV--KVRDKYFRIIAMVDRIKLHRTKKGDQMAFIQLSDDTGLI 979

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 980  DGVVFP 985


>gi|254441785|ref|ZP_05055278.1| DNA polymerase III, alpha subunit subfamily, putative [Octadecabacter
            antarcticus 307]
 gi|198251863|gb|EDY76178.1| DNA polymerase III, alpha subunit subfamily, putative [Octadecabacter
            antarcticus 307]
          Length = 1102

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/1048 (24%), Positives = 452/1048 (43%), Gaps = 83/1048 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +V L + + +S L GA    ++     A     +A+ D N L   +    +   A ++P
Sbjct: 28   RYVELGLCTCFSFLRGASDAVDLAQAAWALGYDCLAVADINTLAGVVRIWSQGRKAALRP 87

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-----Q 124
            +IG                 +    +  + ++  +  + Y RL  L+S+  + D     Q
Sbjct: 88   LIGA----------------RVELVSGEAFLVYPTDRQAYGRLSRLISKGRMADVDGNWQ 131

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K +  + LS L     +GLI++   S    D   +    +   K L   + L    LY 
Sbjct: 132  TKGACDLTLSDLA-THADGLILIAVPSD---DVEAYGRGLKRLCKALPQMRYLAASYLY- 186

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                 RG D  R +++  LA  H L L+A+N  L+ + +     D++  +     +    
Sbjct: 187  -----RGDDHARINRLDALAGQHGLRLLASNEVLYHAPDRRPLQDIMTCIREHCTLVDAG 241

Query: 245  -RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R +   + +LK+ +EM  +F+  P A+  T ++A   +F L   +   P     E    
Sbjct: 242  SRLQPNAERHLKSPAEMQRLFTQWPHAIRATRDVADAIAFDLGELSYEYP----SEVIPQ 297

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                +  L      G   R   G       A   +  L  EL +I ++  + YFL + D 
Sbjct: 298  DMTPQEYLEKLIWKGAAWRYPDGV------ADAIKAVLRKELAMIEKLDIARYFLTIHDI 351

Query: 364  IQWAKKNNIP--VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            I +A+    P  +  GRGS A S   Y L IT +DP + SLLFERF++ +R   PD D+D
Sbjct: 352  IDFARNVAQPEILCQGRGSAANSAVCYVLGITAVDPTQHSLLFERFISEERREPPDIDVD 411

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EVI+++  KYG ER     T    + ++A+R+VG+++ +       + K I  
Sbjct: 412  FEHERREEVIQHIYTKYGRERAGLCATVIHYRPRSAIREVGKSMGLSEDVTGAMAKTIWG 471

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 V      + +R     ++DP + R + ++ +L G+ RH   H  G ++ +R L++
Sbjct: 472  SWGRDVD----GEHAREAGLDMSDPVLRRTVLLAGQLIGMPRHLGQHVGGFILTERALTE 527

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600
             VP+      +    +++   I+  G++K D L L  LT ++KS DF+ A  G K  L+ 
Sbjct: 528  TVPIGNGAMPERTFIEWDKDDIDALGILKVDILALGMLTCIRKSFDFISAHYGTKFTLAT 587

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P +D   Y +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 588  VPQEDPRVYGMLCKGDSIGVFQVESRAQINMLPRLRPRTFYDLVIEVAIVRPGPIQGDMV 647

Query: 659  VVYNNRKNGKEKIVS-----IHP--LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
              Y  R+NG+E I        H    +  +L  T GV I+QEQ M++A   + +S +EA+
Sbjct: 648  HPYLRRRNGEEVITYSSPGPPHDPAELKNILGRTLGVPIFQEQAMKVAIEAAEFSPAEAN 707

Query: 712  VLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LR+AM   + +  ++  +++ +    + G  +  A   F+ +  F +YGF +SHAA++A
Sbjct: 708  ELRKAMATFRSRGTIELLQDKMVGRMVRRGYDEDFAQRCFDQIKGFGEYGFPESHAASFA 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             + Y ++W+K HYP  F AA +  +        +  +DA+   ++I PP VN    D  +
Sbjct: 768  QLVYVSSWLKCHYPDAFCAALLNSQPMGFYAPAQLVRDAKDHGVEIRPPDVNYSHWDSTL 827

Query: 831  GD----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                    +   L  I G     A  ++ A  D PF  L+    R      + R L    
Sbjct: 828  EPSQDGFALRLGLRQITGFQIDAATRLVNAR-DAPFRDLKALQDRASLTAPHVRRL---A 883

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSV 945
             A AL      R Q L     ++                +F           + L    V
Sbjct: 884  QADALRSMFLDRRQALWDASALRDA----------PDLPLFQGTRDEGKEAPVALPAMPV 933

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                V    + + L      HP+   +  L   G     +   +     I +A +V+ +Q
Sbjct: 934  CEQVV---ADYQTLRLSLKKHPMAFLRRSLATQGYTDCTQLKTSRAWQKISMAGLVLIRQ 990

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  + KG  + ++T  +         +P
Sbjct: 991  RPGSAKG--VCFITIEDEFGVANLVVWP 1016


>gi|221067247|ref|ZP_03543352.1| DNA polymerase III, alpha subunit [Comamonas testosteroni KF-1]
 gi|220712270|gb|EED67638.1| DNA polymerase III, alpha subunit [Comamonas testosteroni KF-1]
          Length = 1136

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/1081 (25%), Positives = 448/1081 (41%), Gaps = 106/1081 (9%)

Query: 3    QYLEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            Q + + P ++  L   S +S L GA S   ++ +  +    A+A+TD  ++  A+   + 
Sbjct: 31   QGMGRGPLAYAELHSLSHFSFLRGASSPAELVHRAKSLGYAALALTDECSVAGAVRAFEA 90

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   G+  I G +                        IV+LV    G+  L E ++    
Sbjct: 91   ARDCGLHLIHGSEFAWGP-----------------LRIVVLVRDLLGWGNLCEFITTARS 133

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                K    +  S   ++  +G   L     G +D +     +   E           + 
Sbjct: 134  R-AAKGEYLVDESSPWQLLNQGCECLLLPQRGKLDASDLIAVTACLESASGYLDA---EN 189

Query: 182  LYVNLQRHRGYDRYRESQVVQLA-YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            L++ ++ H   D     Q +Q A     L L+A  +    +       DV+ A+     V
Sbjct: 190  LWLGVELHLAPDDSLWLQTLQQAGAALGLRLLACGDVHMHARSRKPLQDVVTAIRLGRTV 249

Query: 241  SQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            ++     +   + +L++R  + S++      LE T+E+A RCSF L       P    KE
Sbjct: 250  AECGFALQPNAERHLRSRLRLASLYPRA--MLEVTLELAGRCSFSLDEIRYHYP----KE 303

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                       L      G   R  QG   K       R +L  EL +I   K+  YFL 
Sbjct: 304  SVLAGMTATQTLAWLTWEGAAGRYPQGIPGK------VRDQLHKELALIEDKKYEMYFLT 357

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++A+   I +  GRGS A S   Y L IT ++P   +LLFERF++ +R   PD D
Sbjct: 358  VHDIVRYARSVGI-LCQGRGSAANSAVCYCLGITAVNPHGGNLLFERFISKERGEPPDID 416

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF   RR+EVI+Y+  KYG +R A        ++++ALRDVG+AL +P   +D L K  
Sbjct: 417  VDFEHARREEVIQYIYGKYGRDRAALTAVVSCWRSRSALRDVGKALGLPADLIDALAKGQ 476

Query: 480  PNDPAH-------PVSLQAIADDSRFREARLAD----------------------PSVDR 510
                 H              A++ +  EA   D                        +  
Sbjct: 477  YWFSEHAQAQAQTHAETADAAEEGQVPEALPEDWVQRKLQEAEVLACEMHCAVGAHRLRL 536

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
             +E++ +L+   RH S H  G V+ +  L++LVP+     +   V Q++   ++  GL+K
Sbjct: 537  WIELAWQLKDSPRHLSQHVGGFVLTEGKLTRLVPVEPATMARRSVIQWDKDDLDVVGLLK 596

Query: 571  FDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             D L L  LT+L+ +L +    RG   +L  IP +D  TY ++    T+G FQ+ES    
Sbjct: 597  VDVLALGMLTMLRNALNERARWRGESWELHQIPQEDAATYEMICQADTVGTFQIESRAQM 656

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-----NRKNGKEKIVSIHPLIDPMLKE 684
              L  +QP    D++  V++ RPGPI   +V+       R   K  +    P ++  LK 
Sbjct: 657  SMLPRLQPRTFYDLVVEVAIVRPGPIQGGMVHPYLLARERARRKLPLKLEKPELENALKR 716

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISK 743
            T GV I+QEQVMQIA   + +S  +AD LRR+M   K K  + K +   I G    G   
Sbjct: 717  TLGVPIFQEQVMQIAIDAAKFSAGKADELRRSMAAWKRKGGVHKFERPLIDGMVARGYKL 776

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
              A  IF  +  F +YGF +SHA ++A+++Y +AW+K H P  FL A +  +        
Sbjct: 777  EFAQAIFAQMLGFGEYGFPESHAYSFALLAYASAWLKRHEPAIFLQALLNAQPMGFYSPS 836

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG------------DNRIYYSLAAIKGVGTTTAR 851
            +  QDAR+  ++++P  V        +                +   L  +  +G   A 
Sbjct: 837  QLVQDARRHGVRVLPVDVCHSHWHCTLEAPVQAIRGVAQPQPAVRLGLNRVARLGKAAAL 896

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
             I   +A  P+  + D   R      ++  +E+L  A AL      R Q +         
Sbjct: 897  RIEGEAAQAPWKDVSDLAIRARL---DKADMEALAAADALRSLAGHRRQQMW------DA 947

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            A  V          IFA +      ++ L + +     +    +    G     HPL + 
Sbjct: 948  AAQVS------LPPIFA-QAAIHEPRLELPQAAEGEEIM---FDYAATGLSLRRHPLALL 997

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +P L + G+K   E    + G  +R   +V  +Q+  T  G+   ++T  +         
Sbjct: 998  RPRLARHGLKTAAELRQMLPGQKVRACGIVTVRQRPPTANGTL--FITLEDETGVINLVV 1055

Query: 1032 F 1032
            +
Sbjct: 1056 W 1056


>gi|322433250|ref|YP_004210471.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX9]
 gi|321165642|gb|ADW71344.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX9]
          Length = 1069

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/1039 (26%), Positives = 479/1039 (46%), Gaps = 44/1039 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +V L   S++S LEGA     + ++ A+   PA+ I D + L+ A      A   G++ 
Sbjct: 4    GYVELHGRSAFSFLEGASMPEAMAEQAASLGMPALGILDRDGLYGAPRLYMTAKKLGLRS 63

Query: 70   IIGCQLDIDMQDN--LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             IG ++      N  L    Q  T       + LL  +  GY+ L +L++   L  + K 
Sbjct: 64   HIGAEISTAEFGNQVLPEDWQPHTIPERPVRLSLLCESQTGYRNLSQLITGYKLQQKSKG 123

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
                    ++E   EGL+ LTGG  GP+  A          K L +  + F  + +YV L
Sbjct: 124  EGIAPYRMIEERA-EGLVCLTGGDEGPLAAALARGGLDEGRKALQSLVRTFGQENVYVEL 182

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRHR  ++  R    + LA    LPL+ATN     +  + E  D++ A+ H   + +   
Sbjct: 183  QRHRIREQEARNQAAITLARELHLPLLATNGPNMATAFEREVLDLMTAIRHGCTLDEAGL 242

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              +   +  +   +EM+++F DLP A+  TVE++ R  F+++      P +   E + + 
Sbjct: 243  LLQRNTNRQMIGATEMLTLFRDLPYAVAETVELSSRLQFVMKDMGYQFPLYPIPEDETM- 301

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L  + + G+  R   G        +   ++++ EL +IA++  +GYFLIV D +
Sbjct: 302  ---DTFLHKRTMEGVANRY--GCKTSVKLRKKAERQVERELALIAKLGLAGYFLIVWDIV 356

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC- 423
            ++ +KN + V  GRGS A S   Y+L IT +DP+   LLFERFL+  R   PD D+D   
Sbjct: 357  EFCRKNGMLV-QGRGSAANSAVCYSLGITAVDPVGMDLLFERFLSEVRGEWPDIDLDLPS 415

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D R+  I+YV  +YG    A      + + K+A  + G+AL        RL +L+ +  
Sbjct: 416  GDDRERAIQYVYQRYGQLGAAMCANVITYRGKSAAGETGKALGFDVETTKRLTQLVGSWE 475

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                +   + +  +     L  P + + LE+S ++  L RH   H+ G++I    L+ +V
Sbjct: 476  WKGPT-DTMEEQFQNAGFDLHHPRIAKYLELSIRMLDLPRHLGQHSGGMIIAQGQLASVV 534

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
            P+         V Q++ + +   GLIK D LGL  + +L+  ++ +    G KVD++ IP
Sbjct: 535  PIEPASMVGRNVIQWDKEDVSDMGLIKVDLLGLGMMAVLKDCVELIPRYYGKKVDIAQIP 594

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             DD + Y  L    T+G+FQ+ES     +L    PD   D++  V++ RPGPI    +  
Sbjct: 595  HDDPKVYESLRRADTVGLFQVESRAQMASLPRNNPDKFYDLVVQVAIIRPGPIVGKMMNP 654

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+ G+++I   HPL++P+L  T GV ++QEQ+++IA  ++ ++  EA+ LRRA+  +
Sbjct: 655  YMERRQGRQEIRYPHPLLEPVLHRTLGVPLFQEQLLRIAMTIANFTGGEAEELRRALGSR 714

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            +  ++M   + +  +G   NG+       I + ++ FA YGF +SHAA++A+I+Y +AW+
Sbjct: 715  RSADKMKALELKLRAGMDANGVGPAAQEEIVQSISSFALYGFPESHAASFALIAYASAWL 774

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI---- 835
            K HY   F AA +  +           +DA++  ++I P  V        +         
Sbjct: 775  KFHYLGAFTAAILNNQPMGFYSAAVLVKDAQRHGLRIKPVDVLRSSWSCTLEKEDNGKLS 834

Query: 836  -YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
                   ++G+   +A  +  A   +PF S+E+   RV S  L R  L +L   GAL+  
Sbjct: 835  LRLGFRYVRGMREGSAVELEAAREMRPFASIEELARRVPS--LTRTDLTTLAEVGALNSI 892

Query: 895  --GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
              G  R + L  ++   + A             +             L          R 
Sbjct: 893  GEGLHRREALWQVERAGRKA-----------GPLLEELDRDEDADSPLRAMEP---HERM 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +    G     HP+   +P LR M I    +      G   R+A  V+++Q+  T  G
Sbjct: 939  VADYASTGVTVGRHPMAHCRPQLRAMEIIPARDLSLLRHGVKARIAGCVIARQRPGTAHG 998

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
                +++  +      A  
Sbjct: 999  --FIFLSIEDETGISNAII 1015


>gi|74316846|ref|YP_314586.1| DNA polymerase III subunit alpha [Thiobacillus denitrificans ATCC
            25259]
 gi|74056341|gb|AAZ96781.1| DNA polymerase III, alpha subunit [Thiobacillus denitrificans ATCC
            25259]
          Length = 1023

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/1035 (26%), Positives = 454/1035 (43%), Gaps = 80/1035 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L   S+++ L GA     ++ + A     A+A+TD  +L   +     A A G++ 
Sbjct: 2    PYAELHCLSNFTFLRGASHPEELVARAAELGYAALALTDECSLAGVVRAHTAAKACGMKL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +                        +V+L +   GY  L   ++     +  K   
Sbjct: 62   IVGSEFT----------------LVEGLRLVVLATDRAGYGALSAFITHGR-RNALKGRY 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+ L  L   G  G +++      P               +       F  R ++  +R 
Sbjct: 105  RLGLDDLLASGLPGCLVVLLPEPLP------------TLAQARQIVARFPRRAWLAAERF 152

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
            R  D   R + + +L     LP VA  +            D L A+     +++      
Sbjct: 153  RASDDAARLAALDELGEAAGLPRVAAGDVHMHVAGRRALQDTLTAIRLGVPLAEAGAALH 212

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + +L+  S++ +++      L  T+ +A RCSF L       P  +  E +      
Sbjct: 213  PNGERHLRAPSDLATLYP--AAWLAETLVVAARCSFSLDELRYEYPEELVPEGE----TP 266

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR     GL  R   G  AK       R  ++ EL +I  +++  YFL V D +++A
Sbjct: 267  ISHLRRLTEDGLVRRFPDGPPAK------VRTLVEHELALIEELRYEPYFLTVHDIVRFA 320

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A S   YAL IT+++P    +LFERF++ +R   PD D+DF  +RR
Sbjct: 321  RSRGI-LCQGRGSAANSAVCYALFITEVNPACMDMLFERFISKERNEPPDIDVDFEHERR 379

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG +R A   T  + + K+ALRDVG+AL     QVDRL +         V
Sbjct: 380  EEVIQYLYTKYGRDRAALAATVITYRPKSALRDVGKALGFDLDQVDRLARSTSWWDGRKV 439

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            + Q + +         A P V  LL+  ++L G  RH S H  G VI    LSQLVP+  
Sbjct: 440  APQRLVE----AGFDPAHPKVRLLLDRVEELLGFPRHLSQHVGGFVIARGQLSQLVPIEN 495

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                +  + Q++   ++  GL+K D L L  L+ ++++LD L + RG +++LS IP +D 
Sbjct: 496  AAMPERTIIQWDKDDLDALGLLKVDVLALGMLSAIRRALDELGRLRGRRLELSDIPSEDP 555

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664
              Y +L    T+G+FQ+ES      L  M+P    D++  V++ RPGPI    I  Y  R
Sbjct: 556  AVYDMLGRADTIGVFQIESRAQMSMLPRMRPRNFYDLVIEVAIVRPGPIQGGMIHPYLRR 615

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKE 723
            + G E +      +  +L+ T GV I+QEQVMQ+A + +G++  EAD +RR+M   + + 
Sbjct: 616  RQGLEPVTYPSEAVRGVLERTLGVPIFQEQVMQLAIVAAGFTPGEADQVRRSMAAWRRRG 675

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  + R I G  + G  ++ A  IF+ +  F +YGF +SHAA++A++ Y +AW+K H 
Sbjct: 676  GLEHFERRLIDGMRERGYDESFAQQIFQQILGFGEYGFPESHAASFALLVYVSAWLKRHE 735

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRIYY 837
            P  F  A +  +        +  QDAR+  ++++   V     D  +          +  
Sbjct: 736  PAAFTCALLNSQPMGFYAPAQLVQDARRHAVEVLSVDVTASAWDCTLEPAAGSRKPALRL 795

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  +KG+       +  A A +PF S+ED   R     L  R L+ L  AGAL      
Sbjct: 796  GLRMVKGLSLECGARVAAARAQQPFASVEDLARR---GGLAPRDLKHLARAGALAALSGH 852

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R Q    +  I++ A        +    +    +G                      +  
Sbjct: 853  RRQAAWQVAGIEQNAPLALDVSEDVQPELLPLSEG-----------------QDVAADYA 895

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             LG     HPL + +P+L +  +   E       G     A +VV++Q+  T  G  + +
Sbjct: 896  ALGLTLGRHPLALLRPLLARRRLAPAEALGRLAHGRFACTAGLVVTRQRPGTASG--VTF 953

Query: 1018 VTFSEPAKEYEANFF 1032
            +T  +         +
Sbjct: 954  LTLEDETGPTNVIVW 968


>gi|260428495|ref|ZP_05782474.1| error-prone DNA polymerase [Citreicella sp. SE45]
 gi|260422987|gb|EEX16238.1| error-prone DNA polymerase [Citreicella sp. SE45]
          Length = 1113

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/1063 (25%), Positives = 437/1063 (41%), Gaps = 92/1063 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC----AA 65
             +  L V S+++ L GA     ++ +       AIAITD N L   +            A
Sbjct: 13   GYAELCVTSNFTFLTGASHPEELVLRATELGLSAIAITDRNTLAGVVRAWSALKTLREDA 72

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTV---PSIVLLVS---------------TAE 107
                 +      D     ++        P     P ++                      
Sbjct: 73   QEALRVRSCHQTDPCSRQEVGQPQDLAVPAAELLPRLITGARLALMDDPVEWVALPTDRA 132

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
             Y+RL  L++      + K    + L+ L E   +G+I++   +               A
Sbjct: 133  AYERLSRLLTLGKRRAE-KGRCELTLADL-ETHAKGMILIALPTR----------DLARA 180

Query: 168  EKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
             + L   ++ F   +++     + G D+       +LA     P+VA  + L       +
Sbjct: 181  ARPLQRLQRRFPGSVFLGATPRYDGSDQAWFDACAKLALRMNTPMVAAGDVLMHRAARRQ 240

Query: 227  AHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
              DVL  +     +     R +   +  LK   +M  ++   P AL  T+EIA RC+F L
Sbjct: 241  LADVLTCLREGCTIDAIGTRAQPNAERRLKGAPDMARLYRRHPAALRRTLEIAARCAFDL 300

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
               +   P     +  D  +  +  L   A  GL  R   G   K       +  +  EL
Sbjct: 301  SELSYDYP-----DEHDGHEAPQQRLTRLAHEGLARRYPGGVPDK------VQILMSKEL 349

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             V+  + F+ YFL V D + +A+   I +  GRGS A SV  Y L ITD+ P    ++FE
Sbjct: 350  RVVGELGFAAYFLTVHDIVVFARGRGI-LCQGRGSAANSVLCYLLGITDVSPDLIGMVFE 408

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RF++  R   PD D+DF  +RR+EVI+++  KYG  R     T    + +AA+R+VG+ +
Sbjct: 409  RFISRYRGEPPDIDVDFEHERREEVIQWIYEKYGRHRAGLCATVIHFRTRAAIREVGKVM 468

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLY 522
             +       L   I             AD  R RE  L DP   RL   + +  ++ G  
Sbjct: 469  GLSQDVTAALSGQIWGQ------AHGGADPERIRELGL-DPQDRRLAQTIGLIGEIIGFP 521

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            RH S H  G +I    L +L P+         V +++   I+  G++K D L L  LT +
Sbjct: 522  RHLSQHVGGFIITAGRLDELCPIENAAMEGRTVIEWDKDDIDALGILKVDVLSLGMLTCI 581

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            +KS   L     +   L  +P +D  TY +L     +G+FQ+ES      L  MQP    
Sbjct: 582  RKSFALLESHEGISHTLDSVPQEDRATYRMLQRADAVGVFQVESRAQMNFLPRMQPKTFY 641

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            D++  V++ RPGPI   +   Y  R+  +EK     P +  +  +T GV ++QEQ MQIA
Sbjct: 642  DLVIEVAIVRPGPIQGGMVQPYIRRRQQQEKPEPFGPALHEVTAKTLGVPLFQEQAMQIA 701

Query: 700  QLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
             + +GY+  EAD LRR++   +    + + ++RFI G  +NG     A   F  +  FAD
Sbjct: 702  VVGAGYTAEEADRLRRSLASFRRMGTIGEHRDRFIRGMLRNGYDLDAAQRCFTQIEGFAD 761

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGF +SHAAA+A+++Y ++W+K H+P  F  A +  +        +  +D R+  I++ P
Sbjct: 762  YGFPESHAAAFAMLTYVSSWLKCHHPAIFGCALLNSQPMGFYAPAQIVRDMREHGIEVRP 821

Query: 819  PSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
              VN    D  +     G   +      IKG     A  I  A  +  +   E    R  
Sbjct: 822  ICVNHSQWDNVLERRADGRLALRLGFRQIKGFREEDAGWIAAARGNG-YPDPESLWLRAG 880

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--- 930
                   VLE L  A A    G +R   L  +  I+  A             +FA     
Sbjct: 881  LL---PSVLERLAEADAFAGMGLTRRDALWQVKAIRAPA----------PLPLFADPLDG 927

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
            +G     + L    +    V    +   +      HP+++ +P +   GI  + E V   
Sbjct: 928  EGLREPDVVLPPMHLGEEVV---EDYVAMRLSLRAHPMELLRPDID--GIVPHSELVTAP 982

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G ++ +  +V+++Q+  T  G  + ++T  +         +P
Sbjct: 983  LG-HVAVCGLVITRQRPGTASG--VIFMTLEDETGVSNVVVWP 1022


>gi|268317469|ref|YP_003291188.1| DNA polymerase III, alpha subunit [Rhodothermus marinus DSM 4252]
 gi|262335003|gb|ACY48800.1| DNA polymerase III, alpha subunit [Rhodothermus marinus DSM 4252]
          Length = 1607

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/720 (39%), Positives = 410/720 (56%), Gaps = 29/720 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            F HL  H+ YSLL+GA  +  +L++ A  +  A+AITD  NLF   EF + A   GIQP
Sbjct: 3   RFSHLHCHTQYSLLDGAARIQTLLERAAEYEIEAVAITDHGNLFGVPEFYRTAEKIGIQP 62

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIGC+  +          + +         VLL     GY+ LI+L S  YL        
Sbjct: 63  IIGCEFYLTPTSRHDRNERTR------YHQVLLAKNETGYRNLIKLSSLSYLEG-YYYKP 115

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           RI    L +   EGLI  T    G I +       + A K    + +LFG+  Y+ +Q H
Sbjct: 116 RIDHELLTQYH-EGLIATTCCLQGEIPQTILHKGEEAARKLFEWYLELFGEDYYIEIQDH 174

Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              ++ +  + +++ A  + + ++ATN+  ++   D+E HDVL+ +     +S   R R 
Sbjct: 175 GLPEQKKINAILLRWAREYGVRVIATNDVHYVDRTDFEPHDVLLCLQTGKDMSDPSRLRF 234

Query: 249 TPDH-YLKNRSEMVS-IFSDLP-----EALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             D  YLK+ +EM   + SD+      E + NT E+A +C F L     ++P +      
Sbjct: 235 DNDQFYLKSPAEMRQALLSDIEPRLVDEMMANTGEVADKCRFQLPTGKLLMPHYPIP--P 292

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
           +   + +  LR+    G   R             +  +RL+ EL +I +M F+GYFLIV 
Sbjct: 293 EYNGDMDAYLRDLVFEGARRRYGDPL------PHEVAERLEHELAIIKKMGFAGYFLIVQ 346

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DF   A++  + VGPGRGS AGS  AY L IT+IDPL++ LLFERFLNP+R+SMPD DID
Sbjct: 347 DFTTAARRLGVRVGPGRGSAAGSAVAYCLGITNIDPLKYDLLFERFLNPERVSMPDIDID 406

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           F    R +VI YV  KYG E V QIITFG++ AK A+RDV R L +P ++ DR+ KLIP+
Sbjct: 407 FDDRGRGKVIDYVVQKYGRENVCQIITFGTMGAKMAIRDVARVLGIPLAEADRIAKLIPD 466

Query: 482 DPAHPVSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            P   +  QA  +    R  + + DP + +LL  ++ LEG  RH   HAAG++I    +S
Sbjct: 467 GPKVTL-AQAYEEVPELRALKESNDPQIRKLLHYAEVLEGSVRHTGVHAAGVIIAPGRVS 525

Query: 541 QLVP--MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
             VP  + +   +D   TQ++ KWIE+ GL+K DFLGLKTLT+L  +L  + +   +++D
Sbjct: 526 DYVPVAVAKGKDNDTVTTQYDGKWIEEFGLLKMDFLGLKTLTILNDALQLIKENHGIEID 585

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           L  IP DD +T+ L     T+ IFQ ES GMR+ L  ++P  I+D+IA+ +LYRPGP+D 
Sbjct: 586 LDQIPLDDPKTFELFQRGETVAIFQFESEGMREWLRKLKPTSIDDLIAMNALYRPGPMDL 645

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           I  Y  RK+G E +   HPL++P+LK T G+ IYQEQVMQ+AQ+++GY+L +AD+LRR +
Sbjct: 646 IPNYIARKHGLEPVEYPHPLLEPVLKNTYGIPIYQEQVMQMAQVMAGYTLGQADLLRRCV 705



 Score =  337 bits (864), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 109/349 (31%), Positives = 183/349 (52%), Gaps = 28/349 (8%)

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            V+  +MGKK  EEM K +E F++GA++ G+    A  +F+++ KFA YGFNKSH+AAY++
Sbjct: 1123 VVHNSMGKKKVEEMKKHREIFVAGAAERGVDAETANAVFDMMEKFAGYGFNKSHSAAYSI 1182

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K +YP EF+AA+MT EM + +K+     +AR+  ++++PPS+N     F V 
Sbjct: 1183 VAYQTAYLKANYPAEFMAAAMTSEMGDTKKLAVVLDEARRMGLELLPPSINRSQAHFTVE 1242

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            D RI + L AIKGVG      I++A     PF ++ D    +D + +N++VLESL  AGA
Sbjct: 1243 DGRIRFGLGAIKGVGLGAIEAILKAREKHGPFRTIFDLIRHLDLRVVNKKVLESLARAGA 1302

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-TFSDKITLEKFSVENSS 949
            LD     R QL++++D   +YAQ V+ +R     ++F      T      L      + +
Sbjct: 1303 LDELEGHRAQLVEAIDLAVQYAQKVQADRMAGQASLFGESGTRTALPPPNLPVVQPWSRA 1362

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-------------- 995
               + E+ ++GFY +GHPL+ Y+  +         E   T+   ++              
Sbjct: 1363 RCLKEERELIGFYVTGHPLEAYRAEVNAFATTTLAELSRTLEEADMPRNGSTNGHTNGTT 1422

Query: 996  ------------RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                        R+  ++   Q++  R G  + + +  +   + E   F
Sbjct: 1423 NGHAYRPARPRHRICGIITEVQRRIGRNGRPLAFASIEDFTGQGELVIF 1471


>gi|241766940|ref|ZP_04764742.1| DNA polymerase III, alpha subunit [Acidovorax delafieldii 2AN]
 gi|241362588|gb|EER58455.1| DNA polymerase III, alpha subunit [Acidovorax delafieldii 2AN]
          Length = 1100

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/1093 (24%), Positives = 447/1093 (40%), Gaps = 137/1093 (12%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   SS+S   GA     ++ + AA    A+A+TD  ++   +   + A    ++
Sbjct: 12   PGYAELHCLSSFSFQRGASQPQELVARAAALGYQALALTDECSVAGVVRAHEAARDVDLR 71

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL---DQG 125
             I+G +                        +V L    EG+  L E ++         Q 
Sbjct: 72   LILGSEFAW-----------------GDLRLVALARHLEGWGNLCEFITAARRDAPKGQY 114

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA------EKRLLTFKKLFG 179
            +       S LQ           G     I R   F +S         E           
Sbjct: 115  RLHEGTDFSLLQ-----------GCELLLIPRRERFGASDFVAISACLESAAGQLDIKIR 163

Query: 180  DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
              L++ ++ H+G D     + + ++    +LPLVA  +    +       DVL AV    
Sbjct: 164  PHLWLAVELHQGADDSLWLATLQRVGAALQLPLVAAGDVHMHARSRKPLQDVLTAVQRGC 223

Query: 239  VVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             VS+     +   + +L+ R  + SI+   P  L  T+ +A RC+F L       P    
Sbjct: 224  SVSECGFALQFNAERHLRPRLRLASIYP--PWLLAATLTVAARCTFNLDEIRYRYPLETV 281

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                  ++     L   A  G   R   G   K       + ++  EL +IA+  +  YF
Sbjct: 282  PPGMTAREA----LAWHAWEGARGRYPAGVPEK------VQAQIVRELELIAQCGYEMYF 331

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D +++A+   I +  GRGS A SV  + L IT +DP +  LLFERF++ +R   PD
Sbjct: 332  LTVHDIVRYARSQGI-LCQGRGSAANSVVCFCLGITAVDPEQSHLLFERFISKERREPPD 390

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  DRR+EVI+Y+ +KYG ER A      + + ++ALRDVG+AL +    +D   K
Sbjct: 391  IDVDFEHDRREEVIQYIYSKYGRERAAIAAVVTTYRTRSALRDVGKALGVAPVLIDAFAK 450

Query: 478  LIPNDPAHPVSLQAIADDSRFREAR------LADPSVDRLLEISQKLEGLYRHASTHAAG 531
                   H     A   D R R+        L+       L+++ +L+G  RH S H  G
Sbjct: 451  ------DHQWFDDAFPAD-RLRQMAQALGVPLSARQAAFWLDLAGQLKGFPRHLSQHVGG 503

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LA 590
             V+ +  L++LVP+         V Q++   ++  GL+K D L L  L+ L++ LD   A
Sbjct: 504  FVLTEGKLTRLVPVEPASMEGRSVIQWDKDDLDAMGLLKVDVLALGMLSALRRCLDLRSA 563

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
             RG + +L+ IP +D  TY ++    T+G+FQ+ES      L  +QP    D++  V++ 
Sbjct: 564  LRGEQWELADIPREDAATYDMVCAADTVGVFQIESRAQMSMLPRLQPRVFYDLVVEVAIV 623

Query: 651  RPGPIDNIVVYN-----NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            RPGPI   +V+       R+   + +V     +   L+ T G+ I+QEQVMQIA + + +
Sbjct: 624  RPGPIQGGMVHPYLQARERRRRGQPLVLEKEELGAALERTLGIPIFQEQVMQIAMIAARF 683

Query: 706  SLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            S +EAD LRR+M   K    +   +ER + G   NG  +  A  IF+ +  F +YGF +S
Sbjct: 684  SAAEADALRRSMAAWKRTGGVHHFEERLVEGMVANGYERGFAERIFQQMLGFGEYGFPES 743

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HA ++A+++Y ++W+K H P  FLAA +  +        +  QDAR+  ++++P  V   
Sbjct: 744  HAHSFALLAYDSSWLKRHEPACFLAALLNSQPMGFYPPAQLVQDARRHGVRVLPIDVTAS 803

Query: 825  CVDFKVG------------DNRIYYSLAAIKGVGTTTARHIMEASA-------------D 859
              D  +                +   L  + G+G      +++A               D
Sbjct: 804  DWDCTIEGPLAPIAGVAQPQPAVRLGLRLVSGLGAAAGVRVVQARQALRETAGVDGSVGD 863

Query: 860  KPFD-------------------SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
                                   S ED   R    + + R L +     +    G+ R Q
Sbjct: 864  GRGRGDDAGVRTGGAAAPAAVFASTEDLALRAQLSQHDLRALAAADALAS--LSGHRRQQ 921

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +  +       A W               E       + L         V    +    G
Sbjct: 922  MWDAAAQHTAPALWR--------------EVPVHEAPLALPAAPEGEEIV---FDYAATG 964

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                 HPL + +  L +  ++   +      G  +R   +V  +Q+  T KG+   +VT 
Sbjct: 965  LTLRRHPLALLRERLTRWRLRTALQLQGVPHGQKVRACGIVTVRQRPGTAKGTM--FVTL 1022

Query: 1021 SEPAKEYEANFFP 1033
             +         +P
Sbjct: 1023 EDETGPVNVIVWP 1035


>gi|119504394|ref|ZP_01626474.1| Pantoate-beta-alanine ligase [marine gamma proteobacterium HTCC2080]
 gi|119459902|gb|EAW40997.1| Pantoate-beta-alanine ligase [marine gamma proteobacterium HTCC2080]
          Length = 1006

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/1013 (26%), Positives = 447/1013 (44%), Gaps = 73/1013 (7%)

Query: 33   LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
            +++ AA    A+AITD  +L   ++    A    I+ IIG + ++               
Sbjct: 1    MERAAACGYSALAITDECSLAGVVKAHVAAKRCAIKLIIGSEFNLVEGIR---------- 50

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  +V L    E Y  L  L+SR        +        +  +    +I + G S 
Sbjct: 51   ------LVALAPNREAYAELSGLISRSRRRSPKGEYTTRLRDVIFHLKRCLIIWIPGDSD 104

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPL 211
              +                    +L   R ++   R  G D  R   Q   LA    LPL
Sbjct: 105  HEMGTG-------------QQLARLCPGRTWIGSSRLLGNDEMRRFRQRWDLAQKLNLPL 151

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEA 270
            VA  +    S      HDVL A+ H+T VS+   R       +L+   +++ ++   P  
Sbjct: 152  VACGDVRMHSASRKRLHDVLTALNHNTTVSKLGLRRLANSQQHLRTLEKLLPLYP--PSL 209

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
            +  T+ I+++C F L       P  +     D        LR +   G   R   G    
Sbjct: 210  IGETLRISQQCQFNLDELRYEYPEEVIPTGQDANT----YLREQVALGAAQRWPNGV--- 262

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                   + R+  EL +I+ + +  YFL V D +++A++  I +  GRGS A SV  Y L
Sbjct: 263  ---PSAVQSRIQHELVLISELDYEYYFLTVYDLVRFARERQI-LCQGRGSAANSVVCYCL 318

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             IT+++P + +LLFERF++ +R   PD D+DF  +RR+EVI+Y+  KY   R A   T  
Sbjct: 319  HITEVNPEQVNLLFERFISRERDEPPDIDVDFEHERREEVIQYIYRKYTRRRAALAATVI 378

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            + ++++A+RDVG+AL +    V+ L K +          Q        +   +       
Sbjct: 379  TYRSRSAVRDVGKALGLDPILVEDLAKSLAWWNREGELRQRFEQ----QGMGMPGKQAQI 434

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
             L++ Q++ G  RH S H  G VI   P+S LVP+      +  V Q++ + IE  GL+K
Sbjct: 435  FLDLVQEILGFPRHLSQHVGGFVISRGPISNLVPVENASMDERTVIQWDKEDIEALGLLK 494

Query: 571  FDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             D L L  L+ ++K+L  +  +      +  IP +D  TY +L +  +LG+FQ+ES    
Sbjct: 495  VDVLALGMLSAIRKTLALVHRENPQIKRIQDIPREDQATYKMLQSADSLGVFQIESRAQM 554

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
              L  ++P C  D++  +++ RPGPI  D +  Y  RK+G E +   +  I  +L+ T G
Sbjct: 555  SMLPRLKPACFYDLVIEIAIVRPGPIQGDMVHPYLRRKHGLEAVTYPNDAIKSVLEPTLG 614

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIA 746
            V I+QEQV+++A + +G++  EAD LRRA+    +  ++   +++   G  + G S   +
Sbjct: 615  VPIFQEQVIRLAMVAAGFTGGEADALRRAITNWGRNSKLLTFEKKLKDGMRERGYSTEFS 674

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +F+ +  F  YGF +SH+A++A+++Y +AW+K HYP  F    +  +        +  
Sbjct: 675  NRLFDQIKGFGGYGFPESHSASFALLAYVSAWLKCHYPTAFYIGLLNSQPMGFYTPSQLI 734

Query: 807  QDARQFNIQIMPPSVNTPCVDFKV------GDNRIYYSLAAIKGVGTTTARHIMEASADK 860
            QDA++  + ++P  VN    + ++      G   I   L  IKG+       I +A    
Sbjct: 735  QDAQRHGVTVLPADVNHSEWNHQLLSQTDQGQPPIRLGLRLIKGLNKHAGHRIADAQRQM 794

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            PF S+ D   R    K +  VL S   A AL      R Q    +  +Q  +  +     
Sbjct: 795  PFKSISDLRGRAQLDKGDMEVLAS---ADALKSVSGHRHQSQWQIMALQTPSPLLR---- 847

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
               +  +  +    SD I L   SV   +     + +  G     HPL + +        
Sbjct: 848  ---DTPYETKPEDLSDHIELPTPSV---AENVMADYQSTGVTLRDHPLALLREQSPFNQC 901

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + Y E  A      +R+A +V  +Q+  T  G  + ++T  + +  +    +P
Sbjct: 902  RKYSELSALGNNRFVRIAGIVTCRQRPGTASG--VVFLTLEDESGNHNVVVWP 952


>gi|170078017|ref|YP_001734655.1| DNA polymerase III subunit alpha [Synechococcus sp. PCC 7002]
 gi|169885686|gb|ACA99399.1| DNA polymerase III alpha subunit [Synechococcus sp. PCC 7002]
          Length = 882

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/807 (37%), Positives = 465/807 (57%), Gaps = 53/807 (6%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  +  ++ +    + PAIA+TD   ++ A+E  +      I+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQIKPLIKRAEELKMPAIALTDHGVMYGAIELLKTCRNKRIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +   D    T + K         V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62  IIGNEMYVINGDIEDKTQRFKK-----YHQVVLAKNTQGYKNLVKLTTISHLKGFQGKGI 116

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L E   EGLIM +    G + +       Q A +    +K +FGD  Y+ 
Sbjct: 117 FARPCINKE-LIEQHHEGLIMTSACLGGEVPQCILKGEYQRAREVAKWYKNIFGDDYYLE 175

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR    ++V++A   ++ ++ATN+S F+S  D EAHD L+ +  + ++++  
Sbjct: 176 IQDHGSQEDRIVNVEIVKIAQELDIKIIATNDSHFISCYDVEAHDALLCIQTAKLITEDK 235

Query: 245 RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           R R +   YLK+  EM  +F D      + +A+ NT+E+A +      +  P +P +   
Sbjct: 236 RLRYSGTEYLKSADEMRKLFRDHLDPGIIDQAIANTLEVAAKVEPYKILGEPRIPDYPVP 295

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
           E        ++ L      GL  RL      +      Y++RL++EL ++ +M FS YFL
Sbjct: 296 EG----HTADSYLEAVTWDGLLKRLK--CKTQAEVDPTYKERLEYELQMMQQMGFSTYFL 349

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           +V D++++A+ N+IPVGPGRGS AGS+ AY+L IT+IDP+  SLLFERFLNP+R SMPD 
Sbjct: 350 VVWDYVKYARDNDIPVGPGRGSAAGSLVAYSLGITNIDPIHHSLLFERFLNPERKSMPDV 409

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D DFC +RRDE+I+YV  KYG +RVAQIITF  + +KA L+DV R L +PY + D + K+
Sbjct: 410 DTDFCIERRDEMIKYVTEKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADMMAKM 469

Query: 479 IPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           IP     P  L+ +      +  F+     DP V R ++++ ++EG  +    HAAG+VI
Sbjct: 470 IPVARGKPAKLKVMISDDTPEPEFKRRYETDPQVRRWVDMAIRIEGTNKTFGVHAAGVVI 529

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
              PL + VP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT ++K+ D + + R 
Sbjct: 530 SSTPLDEAVPLQRN-NEGAVITQYYMEDVEAMGLLKMDFLGLKNLTTIKKAADLIKEYRH 588

Query: 594 VKVDLSLIPFDDH-------------------ETYHLLTTKGTLGIFQLESSGMRQALEG 634
           V++DL  +P D+                    +T+ L       GIFQLES GM++ ++ 
Sbjct: 589 VELDLDQLPLDERKALEIISKGHAKKLPGDIDKTHDLFGRGDLEGIFQLESDGMKKIVQD 648

Query: 635 MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           ++P  IEDI ++++LYRPGP+D   I ++ NRK+G EKI   H L+  +L ET GV++YQ
Sbjct: 649 LRPSGIEDISSVLALYRPGPLDAGLIPIFINRKHGVEKIEYQHELLQSILNETYGVLVYQ 708

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQ+M++AQ L+GYSL EAD+LRRAMGKK  +EM K + +F+ GA+ NG+S+ IA ++F+ 
Sbjct: 709 EQIMKMAQDLAGYSLGEADLLRRAMGKKKIDEMKKHEAKFVEGAATNGVSEAIARDLFDQ 768

Query: 753 LAKFADY---GFNKSHAAAYAVISYQT 776
           + KFA+Y   G        Y V+  QT
Sbjct: 769 MVKFAEYCLAGGTPVVTVEYGVLPIQT 795


>gi|83952727|ref|ZP_00961457.1| DNA polymerase III, alpha subunit, putative [Roseovarius nubinhibens
            ISM]
 gi|83835862|gb|EAP75161.1| DNA polymerase III, alpha subunit, putative [Roseovarius nubinhibens
            ISM]
          Length = 1107

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/1059 (25%), Positives = 450/1059 (42%), Gaps = 86/1059 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC----AA 65
             +  L V ++++ L GA     ++ + A     AIAITD N+L   +   +        A
Sbjct: 3    PYAELGVTTNFTFLTGASHPEEMVARAAELGLEAIAITDRNSLAGVVRAYKALKLLRDKA 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA------------------- 106
                 I     ID     ++  Q   P P  P +  L++ A                   
Sbjct: 63   QEVLPIRSHRRIDSSSRQEVGWQRPLPRPETPQLPRLITGARLVLRDGRGVDWLALPTDL 122

Query: 107  EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
              YQRL  L++      + K    + L+ L   G  G+I++                 + 
Sbjct: 123  AAYQRLTRLLTLGKRRAE-KGQCHLDLADLL-AGCAGMILIA-----------LPEDLRR 169

Query: 167  AEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
            A   +   ++ +   +++     + G D+        LA     P+VA  + L       
Sbjct: 170  AAPEIQQMRRRYPGHVFLGAAPRYDGSDQAYFDACAALALRCAAPMVAVGDVLMHRAARR 229

Query: 226  EAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
            +  DVL  +     +     R     +  LK   +M  +F + P AL  TVEIA RCSF 
Sbjct: 230  QLADVLTCLREGCTIDHIGTRALPNAERRLKGAEDMARLFRNHPAALRRTVEIAGRCSFC 289

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            L   +   P    +    + +     LR  A  GL  R  +GA AK       R  LD E
Sbjct: 290  LSELSYQYPEEGSQHEPPMAR-----LRRLAEEGLARRYPKGATAKA------RALLDKE 338

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L V+  +KF  YFL V D +Q+A+   I +  GRGS A S+  Y L ITD+ P    ++F
Sbjct: 339  LAVVEELKFPAYFLTVHDIVQFARSRGI-LCQGRGSAANSILCYLLGITDVSPEMIGMVF 397

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERF++  R   PD D+DF  +RR+EVI+++   YG ER     T    + +AA+R+VG+ 
Sbjct: 398  ERFISRHRGEPPDIDVDFEHERREEVIQWIYATYGRERAGLCATVIHFRTRAAIREVGKV 457

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLY 522
            + +      RL   I             AD  R RE  L  AD  + + + +  ++ G  
Sbjct: 458  MGLSQDLTTRLSADIWGLTNSG------ADMERARELGLDPADRRLAQTMRLIGEIIGFP 511

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            RH S H  G VI    L +L P+      D  + +++   I+  G++K D LGL  L+ +
Sbjct: 512  RHLSQHVGGFVITKGRLDELAPIENAAMEDRTLIEWDKDDIDTLGILKVDVLGLGMLSCV 571

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            +KS D LAQ     + L+ +P +D  TY +L     +G+FQ+ES      L  M+P    
Sbjct: 572  RKSFDLLAQHEGQNLSLATVPQEDRHTYEMLQRADAVGVFQVESRAQMNFLPRMKPREFY 631

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            D++  V++ RPGPI   +   Y  R+ G E      P ++ + + T GV ++QEQ MQIA
Sbjct: 632  DLVIEVAIVRPGPIQGGMVQPYIRRRQGLEAPEPFGPALEEVTRRTLGVPLFQEQAMQIA 691

Query: 700  QLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
               +GY+  EAD LRR++   +    + + ++RF++G   NG ++ +A   F  +  FAD
Sbjct: 692  MTGAGYTAEEADHLRRSLASFRRMGTIGEHRDRFLTGMMANGYAREVAERCFGQIEGFAD 751

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGF +SHAAA+A++ Y +AW+K H+P  F  A +  +        +  +DAR   ++  P
Sbjct: 752  YGFPESHAAAFALLVYVSAWLKCHHPAIFACALLNSQPMGFYAPAQIVRDARDHGVETRP 811

Query: 819  PSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
              +N    D  +     G   +      IKG+    AR I+ A  +  +   E    R  
Sbjct: 812  VCLNHSEWDNTLERRGDGALALRLGFRQIKGLREEDARWIVAARGNG-YRDPESVWLRA- 869

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
               +   VLE L  A      G +R   L ++  I          R  K   +F      
Sbjct: 870  --GVAPAVLERLAEADGFADMGLTRRDALWAVRAI----------RGQKPLPLFNDPIDG 917

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
             +           +       +   +      HP+++ +P +   G+  ++  +      
Sbjct: 918  EAIHEPAVTLPPMHLGEEVVEDYVSMRLTLRAHPMELLRPSMP--GLTRHDALLTAPLER 975

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +  +V+++Q+  T  G  + ++T  +         +
Sbjct: 976  R-SICGLVITRQRPGTASG--VVFLTLEDETGVANVVVW 1011


>gi|254461480|ref|ZP_05074896.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacterales bacterium HTCC2083]
 gi|206678069|gb|EDZ42556.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacteraceae bacterium HTCC2083]
          Length = 1102

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/1063 (24%), Positives = 455/1063 (42%), Gaps = 92/1063 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS------QKAC 63
            S+  L   S+++ L GA     ++ + A     AIAITD N+L   +         ++A 
Sbjct: 2    SYAELATTSNFTFLRGASHPEELVTRAAELGLQAIAITDHNSLAGVVRAYAALKELKRAR 61

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI------------------VLLVST 105
               I+  I  +  +D     ++ +Q   P P    +                  + L   
Sbjct: 62   EDTIR--IRSETQLDHSSRQEVGDQQHIPRPQTVHLPKLIVGARLMLRDSHIDWIALPKD 119

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
               Y RL  L++      + K    + L  L E G  G+I++     GP+ +        
Sbjct: 120  RAAYSRLTRLLTLGKRRAE-KGQCHLDLPDLLE-GCSGMILI-ALPRGPLRKTTHD---- 172

Query: 166  VAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
                 +   ++ +   +++     + G D+   +    LA     P+VA  + L    + 
Sbjct: 173  -----ITQMQRRYPSHVFLGAAPRYNGSDQAYLADCAHLALKTSAPMVAVGDPLMHHGKR 227

Query: 225  YEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
             +  DVL  +     + Q   R     +  LK  ++M  +F D P AL+ +VEIA RCSF
Sbjct: 228  RQLADVLTCMREHITIDQIGTRALPNAERRLKGHADMSRVFRDHPAALQRSVEIAARCSF 287

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
             L   +   P  I +      +  +  L   A  G+  R   GA  K       + ++  
Sbjct: 288  CLSELSYEYPDEISE-----GEPPQERLTRLAYEGMMRRYPNGATEKA------KAQIKK 336

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL ++  + F  YFL V D +Q+A+   I +  GRGS A S+  Y L IT++ P   +++
Sbjct: 337  ELKLVKALDFPAYFLTVHDIVQFARSQGI-LCQGRGSAANSILCYLLGITEVSPEVITMV 395

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
             ERF++  R   PD D+DF  +RR+EVI+++  KYG  R     T    + + A+R+VG+
Sbjct: 396  VERFVSEARAEPPDIDVDFEHERREEVIQHIYAKYGRHRAGLCATVTHFRTRGAIREVGK 455

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGL 521
             + +       L   I             AD  R RE  L   D  + + + +  ++ G 
Sbjct: 456  VMGLSEDVTAGLSSQIWGQSDKG------ADPERVRELGLNLEDRRLAQTIRLIGEIIGF 509

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             RH S H  G VI    L +L P+      D  V +++   I+  G++K D LGL  L+ 
Sbjct: 510  PRHLSQHVGGFVITKERLDELCPIENAAMEDRTVIEWDKDDIDTLGILKVDILGLGMLSC 569

Query: 582  LQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++KS D L +   K   ++ IP +D ETY +L     +G+FQ+ES      L  M P   
Sbjct: 570  IRKSFDLLQEHDRKTLSIAAIPQEDPETYDMLCVADAIGVFQVESRAQMNFLPRMLPRKF 629

Query: 641  EDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
             D++  V++ RPGPI   +   Y NR+ G+E++      ++ +L +T GV ++QEQ MQI
Sbjct: 630  YDLVIEVAIVRPGPIQGGMVHPYINRRQGREEVHFPSKELENVLGKTLGVPLFQEQAMQI 689

Query: 699  AQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            A + +G+  SEAD LRR++   +    +   K+RFI+G    G  +  A   F  +  F 
Sbjct: 690  AVVAAGFDPSEADQLRRSLATFRRMGTISTFKDRFINGMLARGYDENFAQRCFAQIEGFG 749

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            +YGF +SHAAA+A++ Y +AW+K H+P  F  A +  +        +  +DAR+ +I++ 
Sbjct: 750  EYGFPESHAAAFAMLVYVSAWLKKHHPAVFACALLNSQPMGFYAPAQIVRDAREHHIEVR 809

Query: 818  PPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            P  VN    D  +     G   +      IKG   T A  I+ A  +  +   E    R 
Sbjct: 810  PICVNASTWDNTLERRGDGALALRLGFRQIKGFRETDADWIVAARGNG-YRDPEAVWLRA 868

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
                +   VLE L  A      G++R   L  +  I+              + +      
Sbjct: 869  ---GVAPSVLERLAEADGFSDMGHTRRDALWLVKAIR------------GQQPLPLFNDP 913

Query: 933  TFSDKITLEKF--SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
               + I+         +       +   +      HP+++ +P +  +      + +   
Sbjct: 914  IDGESISEPDVVLPAMHLGEEVVEDYVSMRLTLRAHPMELLRPNIAGL---TSHDKLPDA 970

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + I +  +V+++Q+  T  G  + ++T  +         +P
Sbjct: 971  PLHRISVCGLVITRQRPGTASG--VIFLTLEDETGVSNVVVWP 1011


>gi|299069161|emb|CBJ40414.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum CMR15]
          Length = 1075

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/1056 (24%), Positives = 445/1056 (42%), Gaps = 79/1056 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA   + ++ +  A    A+A+TD  ++   +     A  AG++
Sbjct: 12   PDYAELHCISNFTFLTGASHPHELVARAQAFGYRALALTDECSVAGTVRAHMAAKEAGLK 71

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             II             + +    P+     +VLL    +GY  L E +++  L    K  
Sbjct: 72   LII--------GSRFTVRDAQGEPW---LRLVLLAQDIDGYGNLCECITQARLA-APKGD 119

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             R+    L         +        I    +    +    +    +++FG+RL + L+ 
Sbjct: 120  YRLLADDLAAPAGALAHLRGMPHCLAILLPDYDPDPRYLLAQAQWCRQVFGERLSMALEL 179

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D      V  ++   ++P+VAT +    S +    HDVL A+  S  +++     
Sbjct: 180  PLRHADDRHRGTVAAVSEQTDVPMVATGDVAMHSRQRKPLHDVLTAIRLSRPIAECGLAL 239

Query: 248  V-TPDHYLKNRSEMVSIFSDLPE----ALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              + +  ++ R  M   F    E     L  +VE+A  C F L       P  +  E   
Sbjct: 240  APSAEQAMRTR--MQLAFFYQGERGAQVLRRSVELASLCDFSLDEITYEYPHEVVPEG-- 295

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +     L  + +AG   R  +   AK       R +LD EL +IA +++  +FL V D
Sbjct: 296  --QTPAGYLHAEVMAGAARRYGKAIPAK------VRAQLDEELALIAELRYEPFFLTVYD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+  +I +  GRGS A S   Y L IT+++P   + LF RFL+  R   PD D+DF
Sbjct: 348  VVRFARSQSI-LCQGRGSAANSAVCYCLGITEVNPESGNTLFARFLSRARNEPPDIDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL +    ++++ K     
Sbjct: 407  EHQRREEVIQYIYKKYGLTRTALAAALITYRTRSALRDVGRALGIDLGVIEQVAKAQAWW 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                   Q        +      P V R   + ++L G  RH S H  G VI    LS+L
Sbjct: 467  DGRHEFAQRAGQ----QGLDPESPLVQRWAGLIEQLRGFPRHLSQHVGGFVIAQGKLSRL 522

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVKV-- 596
            VP+      +  V Q++   +E   L+K D L L  LT ++++LD L     +R      
Sbjct: 523  VPIENAAMPERRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDLLDALPGRRAHYRAP 582

Query: 597  ---DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +  +P +D  TY ++    T+G+FQ+ES   +  L  ++P    D++  V++ RPG
Sbjct: 583  GKLAMQHLPDEDTATYAMICRAETIGVFQIESRAQQSMLPRLRPSTYYDLVIQVAIVRPG 642

Query: 654  PIDNIV--VYNNRKN-----GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            PI   +   Y  R+        + +    P +  +L+ T GV I+QEQVM+IA    G++
Sbjct: 643  PIQGGMVHPYLQRREAMRNGNPDCVTYPGPEVKAVLERTLGVPIFQEQVMEIAMKAGGFT 702

Query: 707  LSEADVLRRAMGK-KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKS 764
              EAD LRR M   K K  + + + R +    +           +   +  FA+YGF +S
Sbjct: 703  ADEADRLRRDMAAWKRKGNLTQHQARLMKEMVEVRHYDPAFVEALCRQMEGFAEYGFPES 762

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAA +A ++Y ++++K H P  F AA +  +        +  Q+AR+  ++++P  V   
Sbjct: 763  HAAGFARLAYVSSFLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSRVRVLPADVTAS 822

Query: 825  CVDFKV--------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
              D  +        G   I   L  I+G+       I+ A A  PF S+ED   R    +
Sbjct: 823  AWDCTLHARPDGAGGQPDIRLGLNRIRGMRPAAGERIVVARAQAPFSSVEDLAHRAALDR 882

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             +  VL +     +    G+ R  L Q+L             +    ++    +      
Sbjct: 883  HDLSVLAAANALLS--LAGHRRQALWQTLAL-----------QEPGQDHALLRQARPVEA 929

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
             + L   S+    V    +   LG     HPL + +P L +M             G   R
Sbjct: 930  PLVLPAPSLGEEVV---ADYGSLGLSLQSHPLSLLRPRLEQMRFVTAAALAGYRNGQLAR 986

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +V  +Q+  T KG+   +V+  +         +
Sbjct: 987  ACGIVTVRQRPGTAKGT--IFVSIEDETGTVNVVLW 1020


>gi|119512710|ref|ZP_01631782.1| DNA polymerase III subunit alpha [Nodularia spumigena CCY9414]
 gi|119462630|gb|EAW43595.1| DNA polymerase III subunit alpha [Nodularia spumigena CCY9414]
          Length = 876

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/811 (37%), Positives = 459/811 (56%), Gaps = 62/811 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D   +    AIA+TD   ++ A+E  +   +  I+P
Sbjct: 2   SFVPLHIHSDYSLLDGASQLPELVDHAISLGMKAIALTDHGVMYGAVELIKICRSKSIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ I   D  K   + K         V+L    +GY+ L+++ +  +L   QGK  
Sbjct: 62  IIGNEMYIINGDFTKQERRPK------YHQVVLAKNTQGYKNLVKITTISHLDGVQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L++   EGLI+ +    G I +A   N    A K    +K++FGD  Y+ 
Sbjct: 116 FSRPCINKDLLKQY-REGLIVTSACLGGEIPQAILSNRPDAARKIAKWYKEIFGDDYYLE 174

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR    ++V++A    +  +ATN+S F+S  D EAHD L+ +    ++S+  
Sbjct: 175 IQDHGSQEDRIVNVEIVKIARELNIKFIATNDSHFISCFDVEAHDALLCIQTGQLISEDK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           R R +   YLK+  EM  +F D      + EA+  T E+A +      +  P +P     
Sbjct: 235 RMRYSGTEYLKSADEMKQLFRDHLPDDIIAEAIATTEEVADKVGVYDIMGDPQIPTPPIP 294

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                    +      A  GL  RL +   ++      Y++RL++EL ++  M FS YFL
Sbjct: 295 SG----HTPDTYAEEVAWNGLLERLNR--KSRSEVDPVYKERLEYELKMLQTMGFSTYFL 348

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           +V D+I++A+ NNIPVGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 349 VVWDYIKFARDNNIPVGPGRGSAAGSLVAYAMKITNIDPVHHGLLFERFLNPERKSMPDI 408

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D DFC ++RD+VI YV  KYG +RVAQIITF  L +KA L+DV R L +PY + D++ KL
Sbjct: 409 DTDFCIEKRDKVIEYVTEKYGKDRVAQIITFNRLTSKAVLKDVARVLNIPYGEADKMAKL 468

Query: 479 IPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           IP     P  L+ +  D      F+E    +  V   L+++ ++EG  ++   HAAG+VI
Sbjct: 469 IPVVRGKPTKLKVMISDKTPAPEFKERYDNNAHVRHWLDMAIRIEGTNKNFGVHAAGVVI 528

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
              PL ++VP+ R+      +TQ+ M+ +E  GL+K DFLGL+ LTL+Q+++D + +   
Sbjct: 529 SADPLDEIVPLQRN-NDGSVITQYFMEDLESMGLLKMDFLGLRNLTLIQRTIDLIEETKG 587

Query: 595 KV--------------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
                                 + S +P D  ++Y LL      GIFQLESSGMRQ +  
Sbjct: 588 YRIDPDEITGQERKAQKILAKGEHSNLPKDVKKSYELLEAGELEGIFQLESSGMRQIVRD 647

Query: 635 MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           ++P  IEDI ++++LYRPGP+D   I  + NRK+G+E I     +++P+L ET G+++YQ
Sbjct: 648 LKPSNIEDISSILALYRPGPLDAGLIPKFINRKHGREAIDYQSAILEPILNETYGIMVYQ 707

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQ+M+IAQ ++GYSL +AD+LRRAMGKK   EM KQ+E+F+ GA+KNG+ K +A  +FE 
Sbjct: 708 EQIMKIAQDMAGYSLGQADLLRRAMGKKKVSEMQKQREKFVDGAAKNGVKKQVADELFEQ 767

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           + KFA+Y            +SY T  +   Y
Sbjct: 768 MLKFAEYC-----------LSYDTEILTVEY 787


>gi|282899282|ref|ZP_06307253.1| DNA polymerase III, alpha subunit [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195851|gb|EFA70777.1| DNA polymerase III, alpha subunit [Cylindrospermopsis raciborskii
           CS-505]
          Length = 893

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/812 (36%), Positives = 460/812 (56%), Gaps = 63/812 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-GIQ 68
           SFV L +HS YSLL+GA  +  ++++  A    ++A+TD   ++ A+E  +   +  G +
Sbjct: 2   SFVPLHLHSDYSLLDGASQIPELVEQAIALGMNSLALTDHGVMYGAIELIKICRSKPGFK 61

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ 127
           PIIG ++ I   D  K   + +         V+L    +GY+ L++L +  +L   QGK 
Sbjct: 62  PIIGNEMYIINGDIEKQERRAR------YHQVVLAKNTKGYKNLVKLTTISHLKGTQGKG 115

Query: 128 ---SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 I    L+E   EGLI+ +   +G I +A      + A K    +K++FG+  Y+
Sbjct: 116 IFSRPCINKDLLKE-HKEGLIVTSACLAGEIPQALLGGKLEKARKVATWYKEVFGEDFYL 174

Query: 185 NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +Q H    DR    ++V++A   ++  +ATN+S ++S  D EAHD L+ +    +++  
Sbjct: 175 EIQDHGSQEDRIVNVELVKIARELDIKFIATNDSHYISCFDVEAHDALLCIQTGKLIADD 234

Query: 244 DRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIE 297
            R R +   YLK+  EM  +F D      + EA+  T E+A +      +  P +P    
Sbjct: 235 KRMRYSGTEYLKSTQEMQLLFRDHLTDDVIAEAIATTTEVAEKVEVYNIMDEPKIPAPPI 294

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                     +      A  GL  RL +   ++      Y++RL++EL +I +M FS YF
Sbjct: 295 PTG----HTPDTYTEEVAWQGLLKRLNR--KSRNEVDTVYKERLEYELKMIEQMGFSSYF 348

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           L+V D+I++A+ +NIPVGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R SMPD
Sbjct: 349 LVVWDYIKFARDHNIPVGPGRGSAAGSLVAYAMGITNIDPVHHGLLFERFLNPERKSMPD 408

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D DFC ++RD+VI YV  KYG ++VAQIITF  L +KA L+DV R L +PY + D++ K
Sbjct: 409 IDTDFCIEKRDQVISYVTEKYGVDKVAQIITFNRLTSKAVLKDVARVLDIPYGEADKMAK 468

Query: 478 LIPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
           +IP     P  L+ +      +  F+     +  V R ++++ ++EG  +    HAAG+V
Sbjct: 469 MIPVVRGKPTKLKVMISDETPEPEFKAKYDKEQHVRRWIDMAMRIEGTNKTFGVHAAGVV 528

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
           I   PL ++VP+ ++      +TQ+ M+ +E  GL+K DFLGL+ LTL+QK++D + Q  
Sbjct: 529 ISSEPLDEIVPLQKN-NDGSVITQYFMEDLESLGLLKMDFLGLRNLTLIQKTIDLIEQNR 587

Query: 594 VKV--------------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
                                  + S +P D  + Y LL +    G+FQLESSGM+Q + 
Sbjct: 588 GYTIDPDDITRQERKAQKILAKGEYSTLPKDVAQAYSLLESGDLEGVFQLESSGMKQIVR 647

Query: 634 GMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            ++P  IEDI ++++LYRPGP+D   I  + NRK+G+E I     ++ P+L ET G+++Y
Sbjct: 648 DLKPSNIEDISSILALYRPGPLDAGLIPKFINRKHGREPIDYESQILQPILNETYGIMVY 707

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QEQ+M+IAQ ++GYSL +AD+LRRAMGKK   EM KQ+E+FI GA+KNG+ K +A  +F 
Sbjct: 708 QEQIMKIAQDMAGYSLGQADLLRRAMGKKKVAEMQKQQEKFIDGATKNGVKKQVAEQLFA 767

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            + KFA+Y            +SY+T  +   Y
Sbjct: 768 DMLKFAEYC-----------LSYETEVLTLEY 788


>gi|326692987|ref|ZP_08229992.1| DNA-directed DNA polymerase III, alpha chain [Leuconostoc argentinum
            KCTC 3773]
          Length = 1117

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/1033 (30%), Positives = 515/1033 (49%), Gaps = 54/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQ+ S+YSLL+   ++  I+         AIA+TD N ++ A+EF + A    ++P+
Sbjct: 2    YAPLQILSAYSLLKNPNTIPQIIATAKVRHYEAIALTDLNVMYGAVEFYRTALENNLKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G            +   G     T   ++L+  T  GYQ L+ L S         ++  
Sbjct: 62   FGVT----------LEVNGLVNTATTFPMILISETQVGYQNLMWLSSAKMTA----KTPD 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L+ L +   EG+ ++  G S  + +        VA+        +    LY+ +    
Sbjct: 108  LTLAALSD-HLEGINVILPGDS-ELSQFIASAYDDVAQYWQTLTTYIAPTHLYLGINPQM 165

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVT 249
                  ++++ +     +  L+A ++  +L+ +D     VL ++ A+  +   K   + +
Sbjct: 166  AP--QIQTRLAEFQAATQAQLIALDDVAYLNTDDAFTTQVLKSIDANVKLEGIKALSQQS 223

Query: 250  PDHYLKNRSEMVSIF--SDLPEA--LENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQ 304
                L++ +++ + +  SDL +A  L N   +  R    L       LP F         
Sbjct: 224  GTQILQDYNQVKAAYQTSDLLKAAFLAN-EALVARSQVTLTFSQTAALPAFQLPAGMP-- 280

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             +    LR  A  GL  RL    + +      Y+  L  EL VI ++ F+ YFLIV D +
Sbjct: 281  -DAGTYLRTLAEKGLAARLQGLHVDQS----RYQALLAHELAVIDQLGFNDYFLIVWDIV 335

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A +N+I +G GRGS AGS+ AYAL ITD+DPL+F LLFERFLN DR+ MPD DID+  
Sbjct: 336  NFAYQNHIQLGAGRGSAAGSLVAYALRITDVDPLQFGLLFERFLNADRVQMPDIDIDWPD 395

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDP 483
            ++RD V++Y+ +KYG    AQI+TFG+L AK ALRD  R   +    + R+   +P    
Sbjct: 396  NKRDVVLKYLHDKYGQRNFAQILTFGTLAAKQALRDTARVFGVSQQMMSRISNAVPTGKQ 455

Query: 484  AHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               VS+Q A+      ++          LL+++Q++EGL R+ STHAAG+V+    L   
Sbjct: 456  GRKVSIQDALQAGDGLQKVLSEIDDGQLLLKVAQQIEGLPRNYSTHAAGVVLSADTLVHT 515

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
            +P+      +  +TQF    +E  GL+K D LGL  L++L ++L     +     D+S +
Sbjct: 516  LPVQSGT-DERLLTQFEKDTVEALGLLKIDVLGLSNLSILAQTLYEARHQLPEHFDISRV 574

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  T  L     T GIFQ ES+G++  L  +QP   E I+A+ SLYRPGP  NI  +
Sbjct: 575  PLDDAATLALYAKGDTNGIFQFESAGIKHVLRQLQPATFEHIVAVNSLYRPGPSRNIESF 634

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R++G E +      +  +L  T G+I+YQEQVM +A+  +G +L EADVLR AM KK 
Sbjct: 635  IKRRHGLEPVTVPDASLKTILAPTFGIIVYQEQVMLVAEAYAGLTLGEADVLRSAMSKKK 694

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              +M   +E+FI+GA   G  +  A  IF  + +FA+YGFN+SHA AY+ +S+Q A+MK 
Sbjct: 695  LTQMAAMQEKFINGAVALGHDRQEAAQIFAYIDEFANYGFNRSHAVAYSKLSFQLAYMKA 754

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP  F  A +   + + EK++ +  +A+   +Q+  P +N     + V    +   L  
Sbjct: 755  HYPAAFFTAVLNANLGSPEKVRLYVAEAKARQLQVAAPHINQSQRFWTVNQGVLQMGLNN 814

Query: 842  IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            I+G+ T     ++    A+ PF S++ F  R+  K   R  L  LV+AGALD FGY+RM+
Sbjct: 815  IRGLRTDFVATVLAERTANGPFQSIQSFVRRLPEKFRKRDTLRQLVYAGALDTFGYNRME 874

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L+ +LD++ + A              F        ++  ++K    + + +   E+  +G
Sbjct: 875  LVTALDDLIEAAS-------------FGD---LILNETKIKKMPDWDLTEKLAYEKEAIG 918

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIGWVT 1019
               SG+PLD Y  ++     +   +          + + A++   +  +T+KG  + +VT
Sbjct: 919  VNLSGYPLDGYASLIADHNYQEIADLTEKTDKKQPVTVIALIDQVRTTRTKKGEEMAFVT 978

Query: 1020 FSEPAKEYEANFF 1032
             S+         F
Sbjct: 979  VSDATGTTSVTVF 991


>gi|56695575|ref|YP_165925.1| DNA polymerase III, alpha subunit, putative [Ruegeria pomeroyi DSS-3]
 gi|71151839|sp|Q5LVN0|DNAE2_SILPO RecName: Full=Error-prone DNA polymerase
 gi|56677312|gb|AAV93978.1| DNA polymerase III, alpha subunit, putative [Ruegeria pomeroyi DSS-3]
          Length = 1101

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/1060 (24%), Positives = 449/1060 (42%), Gaps = 86/1060 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA----A 65
            ++  L V ++++ L GA     ++ + A     AIAITD N+L   +            A
Sbjct: 2    TYAELCVTTNFTFLTGASHPEEMITRAAELGLHAIAITDRNSLAGVVRAYAALKELRREA 61

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP------------------SIVLLVSTAE 107
                 I  Q  ID     ++ +      P  P                    + L     
Sbjct: 62   DEAIRIRSQHRIDSCSRQEVGHPQPIARPEAPRLPRLITGCRLVLRDSPLHWIALPRDRA 121

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
             YQRL  L++    L + +     C   L +        L  G +G I  A        A
Sbjct: 122  AYQRLTRLLT----LGKRRAEKGDCHLDLAD--------LLAGCTGMILIALPQGRLDGA 169

Query: 168  EKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
               L   ++ F   +++     + G D+   +   +LA     P+VA  ++L       +
Sbjct: 170  LPHLQQVQRRFPGHVFLGAAPRYDGSDQAWLAACARLALRSSAPMVAVGDALMHRANRRQ 229

Query: 227  AHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
              DVL  +     + +   R     +  LK  ++M  +F D P AL  T++IA RCSF L
Sbjct: 230  LADVLTCMREHITIDRIGTRALPNAERRLKGHADMARLFRDHPAALRRTLDIAARCSFCL 289

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
               +   P  + +      +  +  L      G+  R   GA       Q   + +  EL
Sbjct: 290  SELSYEYPDEVAE-----GETPQARLERLTAEGIVRRYPGGA------PQRVHELVAKEL 338

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             ++A + F  YFL V D +Q+A+   I +  GRGS A S+  Y L ITD+ P + +++FE
Sbjct: 339  KLVAELGFPAYFLTVHDIVQFARSQGI-LCQGRGSAANSILCYLLGITDVSPDQIAMVFE 397

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RF++  R   PD D+DF  +RR+EVI+++  +YG  R     T    +++AA+R+VG+ +
Sbjct: 398  RFISKYRGEPPDIDVDFEHERREEVIQWIYQRYGRHRAGLCATVIHFRSRAAIREVGKVM 457

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLY 522
             +       L   I             AD  R RE  L DP   RL   + +  ++ G  
Sbjct: 458  GLSQDVTASLSGQIWGQSNGG------ADPERMRELGL-DPEDRRLALTIRLIGEIIGFP 510

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            RH S H  G VI    L +L P+      D  + +++   I+  G++K D LGL  LT +
Sbjct: 511  RHLSQHVGGFVITRGRLDELAPIENAAMEDRTLIEWDKDDIDTLGILKVDVLGLGMLTCI 570

Query: 583  QKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            +K+ D + +   +   +  +P +D  TY +L     +G+FQ+ES      L  M+P    
Sbjct: 571  RKAFDLMREHEQRHLSIDTVPQEDAATYDMLCAADAVGVFQVESRAQMNFLPRMRPRTFY 630

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            D++  V++ RPGPI   +   Y  R+ G EK     P +  +   T GV ++QEQ +QIA
Sbjct: 631  DLVIEVAIVRPGPIQGGMVQPYIRRRQGLEKAEPFGPELAAVTARTLGVPLFQEQALQIA 690

Query: 700  QLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
             + +GY+  EAD LRR++   +    +   ++ FI+G  +NG S+ +A   F  +  FAD
Sbjct: 691  VVGAGYTAEEADHLRRSLASFRRMGTIGAHRDTFIAGMRRNGYSQEVAERCFGQIEGFAD 750

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGF +SHAAA+A+++Y +AW+K H+P  F  A +  +        +  +DAR   +++ P
Sbjct: 751  YGFPESHAAAFAMLAYVSAWLKCHHPAIFACALLNAQPMGFYAPAQIVRDARDHQVELRP 810

Query: 819  PSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
              VN    D ++     G   +      IKG     A  I+ A  +  +   +    R  
Sbjct: 811  ICVNASDWDNRLERRADGALALRLGFRQIKGFREEDAAWIVAARGNG-YPDPQALWLRA- 868

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
               +   VLE L  A A    G  R   L  +  I+  A             +F      
Sbjct: 869  --GVTPAVLERLAEADAFADMGIGRRDALWQVRAIRGQA----------PLPLFNDPLDG 916

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
                         +       +   +      HP+++ +P +   G+  +++  +    +
Sbjct: 917  EIIHEPQVTLPAMHLGEEVVEDYVSMRLTLRAHPMELLRPAIP--GLTPHDKLASVA-AH 973

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + +  +V+++Q+  T  G  + ++T  +         +P
Sbjct: 974  RVSVCGLVITRQRPGTASG--VIFLTLEDETGVSNVVVWP 1011


>gi|313884090|ref|ZP_07817856.1| DNA polymerase III, alpha subunit [Eremococcus coleocola
            ACS-139-V-Col8]
 gi|312620537|gb|EFR31960.1| DNA polymerase III, alpha subunit [Eremococcus coleocola
            ACS-139-V-Col8]
          Length = 1113

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/1027 (29%), Positives = 511/1027 (49%), Gaps = 50/1027 (4%)

Query: 15   QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             V S+YS  +  + + + + +  A    A+ + D  NLF+A EF Q +   GI+ ++   
Sbjct: 3    NVKSTYSFNQATILVKDYVQQAKAMGYQAVGLADQGNLFAAYEFYQASQVFGIKAVL--- 59

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
                    L ++  G          ++     +GYQ LI+L SR+ +  Q + S ++ L+
Sbjct: 60   -------GLTVSLPGLIDDQKAWPALIYAIDQKGYQGLIKL-SRL-MSHQKEYSNQLYLN 110

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRHRGYD 193
             L +     L+ ++ G    +D     +  + A+  L   +++F  D++Y+  Q    ++
Sbjct: 111  CLSDY-KGHLVYISRGHDSELDSLVLHDQIKEAQDLLKQLREIFGEDKVYLGHQI-LPFN 168

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP--D 251
            +     +   A + +L  V+T     L +ED  A  +L            D        +
Sbjct: 169  QIVTRHLSDFAKSMDLKQVSTQPVRLLQQEDVMALTILKRRVDRAAYEPLDLTNFGQRSE 228

Query: 252  HYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              L +R ++  ++      E + N+ ++  R  F LQ    +LP F            + 
Sbjct: 229  KVLLSRKDLEDLYQHYGLVEIISNSDQLMTRLEFKLQEGKDLLPVFDSGSL----LTSQE 284

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L+      L      G  AK      Y++RL +EL+VI +M +  YFLIVAD + + ++
Sbjct: 285  YLKQLVTQAL---NQFGLAAKNT----YQERLAYELSVIHQMGYDDYFLIVADIVSYCRQ 337

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            ++I +G GRGS  GS+  Y L ++ IDPL++ L+FERFLNP+R +MPD D+D     RD+
Sbjct: 338  HHIQLGAGRGSAPGSLVTYLLGVSTIDPLKYDLIFERFLNPERQTMPDIDLDIPNSHRDQ 397

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI YV+ KYG+E+VAQI TF    AK+A+++V R +    SQ+    KLIP DP   + L
Sbjct: 398  VIAYVRQKYGYEQVAQIATFNRFGAKSAIQEVLRQVGQD-SQLKTWSKLIPTDPNRKIDL 456

Query: 490  -QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             QA  ++  FR    A P+   + +  Q LEGL    S HA G+VI D P+  ++P+   
Sbjct: 457  GQAYQENKSFRHLVDASPTNQAIFQAGQALEGLISEHSIHAGGLVITDFPIDSMIPVL-- 514

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
                  +TQF+   +E  GL+K D L LK LTLL + L  +  +    ++  I  +DHET
Sbjct: 515  EEGQSLITQFDKDGVENLGLLKIDLLALKNLTLLDQILQEVKVKDQAFEIEDIDLNDHET 574

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T G+FQ ES G+R  L  +QP   EDI+A+ +L+RPGP+  I  Y  RK+G+
Sbjct: 575  LQLFRRAQTRGVFQFESPGIRNVLSQLQPTSFEDIVAVNALFRPGPMGQIQTYIKRKHGQ 634

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             +     P ++ +LK+T G+IIYQEQVMQI   ++G+++ +AD+LRRAM KK  E M  Q
Sbjct: 635  YQATYPVPELEGILKDTYGIIIYQEQVMQILVSMAGFTMGQADLLRRAMSKKDHEVMQAQ 694

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K  F++GA + G  +  A  +++ +A+FA+YGFN+SHA  Y+ +++Q A++K HY   F 
Sbjct: 695  KVNFLTGALEKGYEEKTASQVYDAIAEFANYGFNRSHAVVYSKLAFQLAYLKVHYSQAFF 754

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +  +++ + ++ +   I+I+   VN   +      N +      +KG+   
Sbjct: 755  LGQLKF---DPTQMQAYLEEIKAAGIKILTLDVNKSQMGVSANGNDLRLGFQMVKGIRPD 811

Query: 849  TARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              R I++      P+    DF  R+  K L    LE L+  GA D  GY+R  LL +L+ 
Sbjct: 812  LMREIIDNRQLMGPYQDFFDFLRRLPDKYLQVTPLEILIKVGAFDSLGYNRATLLTNLEK 871

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +  ++   N      ++F            +E  +  N       E+  LGFY SGHP
Sbjct: 872  VIESVRFSGLN-----MDLFEEMA------PKIETVAELNPLQLIHQEKEHLGFYLSGHP 920

Query: 968  LDVYKPIL-RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            LD Y+  L  ++ +    +       +  RL  ++   +  +TR+G  + +    + + +
Sbjct: 921  LDFYRDNLNAEINLMNISQIKKEEPKSPFRLLGIISRIKLTQTRQGQTMAFAQIEDESGK 980

Query: 1027 YEANFFP 1033
             +   FP
Sbjct: 981  LDQVLFP 987


>gi|27378137|ref|NP_769666.1| error-prone DNA polymerase [Bradyrhizobium japonicum USDA 110]
 gi|71151816|sp|Q89QU8|DNAE2_BRAJA RecName: Full=Error-prone DNA polymerase
 gi|27351284|dbj|BAC48291.1| DNA polymerase III alpha chain [Bradyrhizobium japonicum USDA 110]
          Length = 1151

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/1103 (22%), Positives = 439/1103 (39%), Gaps = 128/1103 (11%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P++  + + +++S L G       + + +     AI I D N L   +   ++     
Sbjct: 2    NTPAYAEIGITTNFSFLRGGSDPRAYVHQASILGISAIGIADHNTLAGVVRAYKE----- 56

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ-- 124
                     D  +     +           P I++       Y RL +L++R    D   
Sbjct: 57   ------LDNDKVLHKPKLLIGARIVFIDGTPDILVYPRDRAAYGRLCQLLTRGKRGDDVT 110

Query: 125  --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
               K   R+  S L       L++LT                  A   L   K    + +
Sbjct: 111  RIEKGECRLTFSDLLAFSEGQLLVLTLPHRFE---------PAQALDVLAKLKATRAEGV 161

Query: 183  YVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++     HRG DR R +++  LA T ++ L+ATN  L+         DVL  +   T + 
Sbjct: 162  WLAASLVHRGDDRRRLARLDDLATTAKVQLLATNEVLYHDPARRPLQDVLTCIREKTTIE 221

Query: 242  QKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R      + +LK   EM  +F D P+A+  T+  A +  F L       P       
Sbjct: 222  AVGRKLEANAERFLKTPREMSRLFRDFPDAIAETMRFANKIDFSLDQLRYQYPDEPVPPG 281

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                K  +  L +   AG++   A      G      R  L  EL +IA +K++ YFL V
Sbjct: 282  ----KTAQGHLEDLTWAGVDKYFA------GKIDDKLRATLKKELALIAELKYAHYFLTV 331

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +A+  NI +  GRGS A S   Y L IT +DP +  LLFERF++ +R+  PD D+
Sbjct: 332  HDIVHYARSQNI-LCQGRGSAANSAVCYVLGITSVDPTKVDLLFERFISKERLEPPDIDV 390

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR+EV++YV  +YG  R A I T    + ++A+RDVG+AL +       L   + 
Sbjct: 391  DFEHSRREEVMQYVYRRYGRHRAAIIATIIHYRPRSAIRDVGKALGLTEDVTAALADTVW 450

Query: 481  NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                  +      +D + ++A L   +P ++  +E++ +L    RH S H  G V+    
Sbjct: 451  GSWGSGL------NDMQVKQAGLDPQNPMINLAVELATELIEFPRHLSQHVGGYVLTQDR 504

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
            L   VP+      D    +++   ++   ++K D L L  LT ++K  D + Q    +  
Sbjct: 505  LDTYVPIGNAAMDDRTFIEWDKDDVDALNMMKVDVLALGMLTCIRKCFDLIDQHKGERWV 564

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            L+ +P DD + Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 565  LASVPQDDPKVYDMLCDGESLGVFQVESRAQMNMLPRLKPRTFYDLVIEVAIVRPGPIQG 624

Query: 656  DNIVVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            D +  Y  R+NG+EK+    P         +  +L +T+GV ++QEQ M+IA   + ++ 
Sbjct: 625  DMVHPYLRRRNGQEKVNYPSPSPEHGPADELYKVLHKTKGVPLFQEQAMRIAIEAAKFTS 684

Query: 708  SEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             EA+ LRR+M   +    + K +++ I      G     A + F+ +  F  YGF +SHA
Sbjct: 685  EEANGLRRSMATFRNVGTIGKYEDKLIGNMVARGYDPNFARSCFDQIKGFGSYGFPESHA 744

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A++A + Y ++W+K H+P  F    +  +        +   DAR+  +++    V+    
Sbjct: 745  ASFAQLVYISSWLKYHHPDAFCCGLLNSQPMGFYAPAQIVGDARKNGVEVRDIDVSYSFA 804

Query: 827  DFKVG-----DNRIYYSLAAIKGVG----------------------------------- 846
               +         +      I G                                     
Sbjct: 805  QNTLEQGSGKYCAVRLGFRQIDGFHWLDEDEEHLKRSLLSFRGAPLGANPESIGPHMPGG 864

Query: 847  ----------------TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                               A  I+ A   +PF SLEDF        L +R L  L  A A
Sbjct: 865  MDSGLDAGASPRNDKKEDWANRIVAARNRRPFTSLEDFAR---DTGLPKRALILLADADA 921

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
                G  R + L  +  +                 +F             +   +     
Sbjct: 922  FRSLGLDRREALWQVRRLPDDV----------PLPLFEAATAREQPDEHAKPLPLMPRPE 971

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            +   + + +     GHP++  + +L +  +   ++         +R A +V+ +Q+  + 
Sbjct: 972  QVVADYQTIRLSLKGHPMEFLREMLSRERVVACKDVNHQNERRRVRCAGVVLVRQRPGSA 1031

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
             G  + ++T  +         +P
Sbjct: 1032 SG--VVFMTLEDETGIANVVVWP 1052


>gi|307301696|ref|ZP_07581455.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
 gi|307316281|ref|ZP_07595725.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
 gi|306898121|gb|EFN28863.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
 gi|306903394|gb|EFN33983.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
          Length = 1116

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/1061 (24%), Positives = 440/1061 (41%), Gaps = 86/1061 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F  L   +++S LEGA     ++          + I D N++   +    KA  
Sbjct: 1    MSADAVFCELGARTNFSFLEGAAPAEEMVVFAKKAGLAGLGIADRNSVAGVVRAHAKAKV 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G     G +L                     P I+       G+  L  L+S   L   
Sbjct: 61   EGYPFQPGARLVFA---------------DGTPDILAYPKNRRGWGHLCRLLSAGNLRS- 104

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                   C   L ++               + +       +  E  L T K+  G+RLY+
Sbjct: 105  ---KKGDCTLHLADLLEW-----QEELLLIVMQGEGRPEPESLEVLLGTLKEHAGNRLYL 156

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L  H  G+DR+  + +  +A    + L+ATN++L+         DV+ ++     ++  
Sbjct: 157  GLAPHYDGFDRHDFAVLAAIARKAGIGLLATNDALYHDPHYRPLADVVTSIREHVPIAGA 216

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                    + +LK   EM  +FSD PEA+ NT +  R  +F L   +    ++ ++  D 
Sbjct: 217  GFLLQKNAERHLKGPREMARLFSDYPEAIANTRKFFRELAFSLDELS---HQYPDENAD- 272

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +     LR     G   R  +G   K        +++D+EL +I   K+  YFL V  
Sbjct: 273  -GETPAESLRRLVAEGAAERYPEGVPEK------VMRQIDYELELIHDKKYEPYFLTVHK 325

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+  NI +  GRGS A S   + L ITD+DP +F+LLF+RFL+ DR   PD D+DF
Sbjct: 326  LVKFARSVNI-LCQGRGSAANSSVCFCLGITDVDPQKFTLLFDRFLSKDRDEPPDIDVDF 384

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+EVI+Y+   YG E         S ++++A R+V +A  +       L   I   
Sbjct: 385  EHERREEVIQYIYRTYGKEHAGLTAAVISYRSRSAGREVAKAFGLSEDVQSALVSSIWGW 444

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               P +     + ++      ADP   R+L  +  L    RH S H  G VI    L ++
Sbjct: 445  GTSPFT----EEQAKGAGLDAADPLTRRVLAYASLLMNFPRHLSQHVGGFVITRDRLDEV 500

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+      D  + +++   +++  ++K D L L  LT L K    L     +       
Sbjct: 501  VPIMNTAMPDRYMIEWDKDDLDELKILKVDVLALGMLTCLAKGFKLLEAHYGEPITLAEI 560

Query: 603  FDDH--ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NI 658
            + DH    Y ++    T+G+FQ+ES      L  +QP  + D++  V++ RPGPI    +
Sbjct: 561  YQDHRDAVYDMICRADTVGVFQIESRAQMSMLPRLQPREMYDLVIEVAIVRPGPIQGNMV 620

Query: 659  VVYNNRKNGK---EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              Y  R+  +   E +V   P +  +L+ T GV ++QEQ MQIA   +G+S SEAD LRR
Sbjct: 621  HPYLKRREAQRRGEAVVYPSPELKAVLERTLGVPLFQEQAMQIAITAAGFSPSEADRLRR 680

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AM   K    +   + + + G   N   +  A   F  +  F +YGF +SHAA++A + Y
Sbjct: 681  AMATFKRTGTIHTFERKMVEGMVANDYEREFAERCFNQIKGFGEYGFPESHAASFASLVY 740

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831
             +AW+KT+YP  F AA +  +        +  +DAR+  ++++P  +N    D  +    
Sbjct: 741  ASAWLKTYYPDIFCAALLNAQPMGFYAPAQLVRDAREHGVRMLPVDINHSDWDALLEGEG 800

Query: 832  --------------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                                   +      +KG+  T  + ++    +  + S+ D   R
Sbjct: 801  AFDKNAVHPRHASMREVIKTRKAVRLGFRLVKGLKQTDMKALVARRGEG-YRSVHDLWLR 859

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
                 L+R VLE L  A A    G  R   L ++  +       ++    +   +F    
Sbjct: 860  ---SGLSRSVLERLADADAFRSIGLDRRAALWAVKAL-------DEQSAVERLPLFEGAG 909

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                            +  +  ++ R L      HP+   +    +MGI    +  AT  
Sbjct: 910  SDDLQIEPKVALPDMPAGEQVIHDYRTLTLSLKAHPVSFMREDFSRMGILRSRDLAATAT 969

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            G  + +A +V+ +Q+  +  G  + ++T  +         +
Sbjct: 970  GRWVTVAGLVLVRQRPGSANG--VIFMTIEDETGIANIIVW 1008


>gi|15966924|ref|NP_387277.1| putative DNA polymerase III alpha chain protein [Sinorhizobium
            meliloti 1021]
 gi|71151850|sp|Q92LA6|DNE21_RHIME RecName: Full=Error-prone DNA polymerase 1
 gi|15076197|emb|CAC47750.1| Putative DNA polymerase III alpha chain [Sinorhizobium meliloti 1021]
          Length = 1116

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/1061 (24%), Positives = 439/1061 (41%), Gaps = 86/1061 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F  L   +++S LEGA     ++          + I D N++   +    KA  
Sbjct: 1    MSADAVFCELGARTNFSFLEGAAPAEEMVVFAKKAGLAGLGIADRNSVAGVVRAHAKAKV 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G     G +L                     P I+       G+  L  L+S   L   
Sbjct: 61   EGYPFQPGARLVFA---------------DGTPDILAYPKNRRGWGHLCRLLSAGNLRS- 104

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                   C   L ++               + +       +  E  L T K+  G+RLY+
Sbjct: 105  ---KKGDCTLHLADLLEW-----QEELLLIVMQGEGRPEPESLEVLLGTLKEHAGNRLYL 156

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L  H  G+DR+  + +  +A    + L+ATN++L+         DV+ ++     ++  
Sbjct: 157  GLAPHYDGFDRHDFAVLAAIARKAGIGLLATNDALYHDPHYRPLADVVTSIREHVPIAGA 216

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                    + +LK   EM  +FSD PEA+ NT +  R  +F L   +    ++ ++  D 
Sbjct: 217  GFLLQKNAERHLKGPREMARLFSDYPEAIANTRKFFRELAFSLDELS---HQYPDENAD- 272

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +     LR     G   R  +G   K        +++D+EL +I   K+  YFL V  
Sbjct: 273  -GETPAESLRRLVAEGAAERYPEGVPEK------VMRQIDYELELIHDKKYEPYFLTVHK 325

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+  NI +  GRGS A S   + L ITD+DP +F+LLF+RFL+ DR   PD D+DF
Sbjct: 326  LVKFARSVNI-LCQGRGSAANSSVCFCLGITDVDPQKFTLLFDRFLSKDRDEPPDIDVDF 384

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+EVI+Y+   YG E         S ++++A R+V +A  +       L   I   
Sbjct: 385  EHERREEVIQYIYRTYGKEHAGLTAAVISYRSRSAGREVAKAFGLSEDVQSALVSSIWGW 444

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               P +     + ++      ADP   R+L  +  L    RH S H  G VI    L ++
Sbjct: 445  GTSPFT----EEQAKGAGLDAADPLTRRVLAYASLLMNFPRHLSQHVGGFVITRDRLDEV 500

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+      D  + +++   +++  ++K D L L  LT L K    L     +       
Sbjct: 501  VPIMNTAMPDRYMIEWDKDDLDELKILKVDVLALGMLTCLAKGFKLLEAHYGEPITLAEI 560

Query: 603  FDDH--ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NI 658
            + DH    Y ++    T+G+FQ+ES      L  +QP  + D++  V++ RPGPI    +
Sbjct: 561  YQDHRDAVYDMICRADTVGVFQIESRAQMSMLPRLQPREMYDLVIEVAIVRPGPIQGNMV 620

Query: 659  VVYNNRKNGK---EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              Y  R+  +   E +V   P +  +L+ T GV ++QEQ MQIA   +G+S SEAD LRR
Sbjct: 621  HPYLKRREAQRRGEAVVYPSPELKAVLERTLGVPLFQEQAMQIAITAAGFSPSEADRLRR 680

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AM   K    +   + + + G   N   +  A   F  +  F +YGF +SHAA++A + Y
Sbjct: 681  AMATFKRTGTIHTFERKMVEGMVANDYEREFAERCFNQIKGFGEYGFPESHAASFASLVY 740

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831
             +AW+KT+YP  F AA +  +        +  +DAR+  ++++P  +N    D  +    
Sbjct: 741  ASAWLKTYYPDIFCAALLNAQPMGFYAPAQLVRDAREHGVRMLPVDINHSDWDALLEGEG 800

Query: 832  --------------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                                   +      +KG+  T  + ++    +  + S+ D   R
Sbjct: 801  AFDKNAVHPRHASMREVIKTRKAVRLGFRLVKGLKQTDMKALVARRGEG-YRSVHDLWLR 859

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
                 L+R VLE L  A A    G  R   L ++  +       ++    +   +F    
Sbjct: 860  ---SGLSRSVLERLADADAFRSIGLDRRAALWAVKAL-------DEQSAVERLPLFEGAG 909

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                            +  +  ++ R L      HP+   +    + GI    +  AT  
Sbjct: 910  SDDLQIEPKVALPDMPAGEQVIHDYRTLTLSLKAHPVSFMREDFSRRGILRSRDLAATAT 969

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            G  + +A +V+ +Q+  +  G  + ++T  +         +
Sbjct: 970  GRWVTVAGLVLVRQRPGSANG--VIFMTIEDETGIANIIVW 1008


>gi|163738163|ref|ZP_02145579.1| DNA polymerase III, alpha subunit [Phaeobacter gallaeciensis BS107]
 gi|161388779|gb|EDQ13132.1| DNA polymerase III, alpha subunit [Phaeobacter gallaeciensis BS107]
          Length = 1127

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/1060 (24%), Positives = 451/1060 (42%), Gaps = 84/1060 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  L V ++++ L GA     ++ + A     A+AITD N+L   +           
Sbjct: 25   APDYAELCVTTNFTFLTGASHPEELIVRAAELGLSALAITDHNSLAGVVRAWSALKELKR 84

Query: 68   QP----IIGCQLDIDMQDNLKMTNQGKTPFPTVP------------------SIVLLVST 105
             P     I  Q  +D     ++ +    P PT P                    + L   
Sbjct: 85   DPQDALKIRSQHQVDSSSRQEIGHTSALPKPTTPIFPKLIVGCRLILQNCAVDWIALPCD 144

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNS 163
               Y+RL  L++    L + +     CL + +++    +G+I++       + +    N 
Sbjct: 145  RSAYKRLARLLT----LGKRRAEKGQCLLYAEDMIDACKGMILI------ALPKETLSN- 193

Query: 164  SQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
               A   +    + F + +++     + G D+   +   +LA T   P+VA  + L    
Sbjct: 194  ---AVSDIQKIGRQFPNHVFLGATPRYDGSDQAYLAACAKLAQTTCAPMVAVGDVLMHRA 250

Query: 223  EDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
               +  DVL  +  +  +     R     +  LK  ++M  IF D P AL  T EIA RC
Sbjct: 251  NRRQLADVLTCMRENINIDDIGTRALPNAERRLKAGADMARIFRDHPAALRRTAEIANRC 310

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            +F L   +   P       +   +  ++ L   A  GL+ R   G   +        + +
Sbjct: 311  NFDLSELSYEYPH-----EEAEGETPQDRLERLAREGLKRRYPDGPPDRAI------KLM 359

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + EL+ +  ++F  YFL V D +Q+A+   I +  GRGS A S+  Y L ITD+ P   +
Sbjct: 360  EKELSAVKDLEFPAYFLTVHDIVQFARSKGI-LCQGRGSAANSILCYLLGITDVSPDMIA 418

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            ++FERF++  R   PD D+DF  +RR+EVI+++  KYG  R     T    + +AA+R+V
Sbjct: 419  MVFERFVSKHRGEPPDIDVDFEHERREEVIQWIYQKYGRHRAGLCATVIHFRTRAAIREV 478

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            G+ + +       L   I       V L+ I +        L D  + + + +  ++ G 
Sbjct: 479  GKVMGLSQDVTAGLSGQIWGMSNGSVDLERIRELG----LNLEDRRLMQTIRLIGEIIGF 534

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             RH S H  G VI    L +L P+      +  V  ++   I+   ++K D L L  LT 
Sbjct: 535  PRHLSQHVGGFVITSGRLDELAPIENAAMENRTVICWDKDDIDALRILKVDILALGMLTC 594

Query: 582  LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++K+   + Q   +   ++ IP  D  TY +L     +G+FQ+ES      L  M+P   
Sbjct: 595  IRKAFALMQQHENITHSIATIPQKDEATYDMLCAADAVGVFQVESRAQMNFLPRMRPREF 654

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
             D++  V++ RPGPI  D +  Y  R+NG EK     P ++ + + T+GV ++QEQ +QI
Sbjct: 655  YDLVIEVAIVRPGPIQGDMVRPYIRRRNGLEKPDPFGPQLEQVTRRTKGVPLFQEQALQI 714

Query: 699  AQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            A + +G+S  EAD LRR++   +    + K +++FI+G  KN  S+ IA   F  +  FA
Sbjct: 715  AVVGAGFSAEEADHLRRSLASFRRMGTISKYRDKFIAGMLKNKYSREIAERCFGQIEGFA 774

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            DYGF +SHAAA+A+++Y +AW+K H+P  F  A +  +        +  +D R   I++ 
Sbjct: 775  DYGFPESHAAAFAMLAYVSAWLKCHHPAIFACALLNSQPMGFYAPAQIVRDVRDHGIEVR 834

Query: 818  PPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            P  VN    D  +     G   +      IKG        I+ A  +  +   E    R 
Sbjct: 835  PICVNQSQWDNSLERRPDGTLALRLGFRQIKGFKEDDTGWIIAARGNG-YIDPEHLWLRA 893

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
                     LE L  A A    G SR   L  + +I   A             +F  +  
Sbjct: 894  GLA---PAALERLAEADAFSSMGISRRDALWQVKSITTPA----------PLPLFNDQLD 940

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
              +           +       +   +      HP+++ +P L  +      + +     
Sbjct: 941  GEAINEPNVMLPRMHLGEEVVEDYVSMRLSLRAHPMELLRPTLPGL---TCNDQLIKAPL 997

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + +  +V+++Q+  T  G  + ++T  +         +
Sbjct: 998  QRVSVGGLVITRQRPGTASG--VIFLTLEDETGVCNVVVW 1035


>gi|239816178|ref|YP_002945088.1| DNA polymerase III, subunit alpha [Variovorax paradoxus S110]
 gi|239802755|gb|ACS19822.1| DNA polymerase III, alpha subunit [Variovorax paradoxus S110]
          Length = 1118

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/1064 (25%), Positives = 454/1064 (42%), Gaps = 79/1064 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S   GA +   ++++       A+AITD  ++   +          + 
Sbjct: 33   PDYAELHCLSNFSFQRGASTPEELVERAYQLGYTALAITDECSVAGIVRAHVCLRD--LP 90

Query: 69   PIIGCQLDIDMQDNLKMTNQG------KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              +         +     N G               +V++ +  EG+  L E ++     
Sbjct: 91   AKLEEYEREHPGEPPLPRNPGFRLLFGSEFRFERFRLVVIANGTEGWGNLCEFITAARNT 150

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +  K   R+          +   +L      P         +    + LL  K L+   L
Sbjct: 151  ELPKGEYRVSWEHSDVASLQDCQVLFVPHREP----GAAVDAATLHEDLLAAKALYAGNL 206

Query: 183  YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ ++  +   D    + ++Q      +PLVA  +    +      HDVL AV     V+
Sbjct: 207  WLAVEMLNELDDDLWFAALMQAGEQTGVPLVAAGDVHMHARSAKPLHDVLTAVREGKTVA 266

Query: 242  QKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            +      +  + +L+ R  +  ++  LP  L NT+ +A RC F  +V           E 
Sbjct: 267  ECGFALQSNAERHLRQRVRLAELY--LPRMLANTLVVAERCRFDPEVIRENYK--YPLET 322

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +     L  K   G +VR  +G   K       R +L+ EL +I  MK+  +FL V
Sbjct: 323  VGSSETPAETLVRKTWEGAQVRFPEGIPDK------VRAQLEKELALIVEMKYEMFFLTV 376

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +++A+  +I +  GRGS A S   Y L IT I+P +  LLFERFL+  R   PD D+
Sbjct: 377  EDIVRFARSQSI-LCQGRGSSANSAVCYCLGITAINPEKGHLLFERFLSRHRHEPPDIDV 435

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR+EVI+Y+  KYG ER A        +A++ALRDVG+A+ +    +D   K   
Sbjct: 436  DFEHQRREEVIQYIYQKYGRERAAIAAVVICYRARSALRDVGKAMGIDERLIDEFAKDHY 495

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  +  Q     +R    +  +  + + +E++++L+G  RH S H  G V+    L+
Sbjct: 496  WFDDTVLGEQLFKAAARV-GVQEDELKLVQWIEMTRRLKGFPRHLSQHVGGFVLTHTRLT 554

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599
            +LVP+ +    D  V Q+    +E  G++K D L L  L+ +++ LD +   RG  V + 
Sbjct: 555  RLVPVEKASMKDRSVIQWEKDDLEAMGMLKVDVLALGMLSAIRRGLDHMNRWRGSMVQMH 614

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD + + ++    T+G+FQ+ES      L  ++P C ED++  V++ RPGPI   +
Sbjct: 615  HIPNDDQKVFDMICDADTIGVFQIESRAQMSMLPRLKPRCYEDLVIEVAIVRPGPIQGGM 674

Query: 660  VYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            V+   K  +      +I      + P L+ T G+ I+QEQVMQIA + + ++  EAD LR
Sbjct: 675  VHPYLKQRERVAKGLEIHYEKEELKPALERTLGIPIFQEQVMQIAMIAARFTADEADQLR 734

Query: 715  RAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RAM   K K  ++K   + + G + +G     A  IF+ +  F DYGF +SHAA++A++ 
Sbjct: 735  RAMAAWKRKGGLEKFHHKLVKGMTDHGYKAEFAEAIFKQILGFGDYGFPESHAASFALLV 794

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831
              ++W+K + P  FLAA +  +        +  QDAR+  +++ P  V    +D  +   
Sbjct: 795  TVSSWLKNYEPACFLAALLDSQPMGFYSPSQLVQDARRHGVEVRPADVTCSDIDTTLEAR 854

Query: 832  -----------------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
                                      +   L  I  +    A+ ++EA A  PF S ED 
Sbjct: 855  APDAPRMPPGTDARYADRLGRENQPAVRLGLNRISSLSKEGAKRLLEARAQAPFTSTEDL 914

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              R +    +   L +     +L   G+ R Q+  +    +  A                
Sbjct: 915  ALRAELDGKDMAALAAADALMSLS--GHRRQQVWDATAQRRSPALL-------------- 958

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
              KG   ++  L +            +   LG     HPL + +P L +M +   E+  A
Sbjct: 959  --KGVPINEPVL-QLPAAPEGEEIVGDYAALGLTLRRHPLALLRPRLARMKLMSAEQLRA 1015

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               G  +R   +V  +Q+  T  G+   +VT  +         +
Sbjct: 1016 QPSGQTVRACGIVKGRQRPGTANGT--IFVTLEDETGNVNVIVW 1057


>gi|330962397|gb|EGH62657.1| error-prone DNA polymerase [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 925

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/989 (27%), Positives = 443/989 (44%), Gaps = 82/989 (8%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S  +  L   S++S   GA S   + ++       A+AITD   L   +   Q +   G+
Sbjct: 2   STEYAELHCLSNFSFQRGASSALELFERALRHGYTALAITDECTLAGIVRALQASRKTGL 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             I+G ++ I+                  P IVLLV    GY+ L +L++      + K 
Sbjct: 62  PLIVGSEMYIENG----------------PKIVLLVEDKTGYEALCKLITVARRRAK-KG 104

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             R+      E  + GL+         I        +Q    +    ++ F DRL++ ++
Sbjct: 105 EYRLLREDF-ERSSSGLLA--------IWLPDIEGDAQACRSQGNWLREHFTDRLWLGVE 155

Query: 188 RHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            HRG  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V++    
Sbjct: 156 LHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEAGHL 215

Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                + +L+    +   + D    L  +V IARRC+F  +      P  +  +     +
Sbjct: 216 LFANGERHLRPLDALAEHYPDW--LLAESVRIARRCTFDFEQLKYEYPHELVPKG----Q 269

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + LR     G+  R  +G  A        R +++ EL +I   KF  YFL V D ++
Sbjct: 270 TATSWLRELTERGIRRRWPKGLSAAA------RAQVEKELALITEKKFDSYFLTVHDIVE 323

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  D
Sbjct: 324 FARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERNEPPDIDVDFEHD 382

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L +        
Sbjct: 383 RREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPSDQINTLAEAFSRWS-- 440

Query: 486 PVSLQAIADDSRFREARLAD--PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                ++    R RE       P + R+L ++ +L G  RH S H  G VI + PL  LV
Sbjct: 441 ----DSLPSPERLREYGFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLDTLV 496

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602
           P+     ++  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ + 
Sbjct: 497 PVENAAMAERTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADMS 556

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
            DD ETY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  
Sbjct: 557 GDDPETYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHP 616

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
           Y  R+N +E I    P +  + + T GV ++QEQVM++A + + Y+  EAD LRRAM   
Sbjct: 617 YLRRRNKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADELRRAMAAW 675

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K    +D  +ER  +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W+
Sbjct: 676 KRHGGLDPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWL 735

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------- 832
           K H P  F  A +           +  QDAR+ +I+I P  V     D  +         
Sbjct: 736 KCHEPAAFTCALINSWPMGFYNPDQLLQDARRHHIEIRPVDVRYSHWDCTLEPVDHPDST 795

Query: 833 --NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I   L  ++      A  I  A + +PF    D   R +    + R  E+L  +GA
Sbjct: 796 RNLAIRLGLRMLRSFREDDALRIEAARSKRPFADATDLTIRAEL---DSRAAEALADSGA 852

Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
           L      R +    +  +                 +F  +  +   ++TL   +V     
Sbjct: 853 LRGLIGHRHRARWEVAGV------------EAQRPLF-DDLPSEETQVTLPLPTVGED-- 897

Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMG 979
               +   LG     HPL + +  L    
Sbjct: 898 -LMADYATLGTTLGPHPLALLRRQLAAKR 925


>gi|89069703|ref|ZP_01157040.1| DNA polymerase III subunit alpha [Oceanicola granulosus HTCC2516]
 gi|89044783|gb|EAR50889.1| DNA polymerase III subunit alpha [Oceanicola granulosus HTCC2516]
          Length = 1110

 Score =  759 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/1050 (24%), Positives = 453/1050 (43%), Gaps = 86/1050 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L + + +S L GA    N   +       AI + D N     +    +A    ++P
Sbjct: 26   PFVELGLATCFSFLRGASDATNFALEAHRQGYDAIGVADLNTFAGVVRLHIEAKVTRLRP 85

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR--MYLLDQGKQ 127
            +IGC                +    +    +        Y RL  L+S+  M+  +   Q
Sbjct: 86   VIGC----------------RLALLSGEVFLAYPRDRAAYGRLSRLLSKGKMHDSEGNWQ 129

Query: 128  SVRICLSWLQEIGTEG----LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
               +C   L ++        LI++       ++RA           RL T   +    LY
Sbjct: 130  KKGVCDLTLADLAAHAEGVQLILVPPEDLDALERA-----LPGLLTRLPTLGHIAASHLY 184

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                  RG DR R +++  LA  H L ++ATN+ L+         DV+  +     +++ 
Sbjct: 185  ------RGDDRARINRLDALAVRHGLQILATNDVLYHERARRPLQDVMSCIREGVTLAEA 238

Query: 244  D-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              R     + +LK+ +EM  +F++ P A+     +A  C F L+  A   PR    E   
Sbjct: 239  GFRLEQNAERHLKSPAEMARLFNEWPHAIAAARAVADSCRFDLEELAYEYPR----EMIP 294

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             +   +  L     AG   R   G        +     L+ EL +I ++  + YFL + D
Sbjct: 295  TETTPQAWLEELTWAGAAERYPDGI------PEATVAVLNKELAMIEKLDIARYFLTIND 348

Query: 363  FIQWAKKN--NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +++A++      +  GRGS A S   Y L IT +DP +  LLFERF++ +R   PD D+
Sbjct: 349  IVRFAREGVAKPILCQGRGSAANSAVCYVLGITAVDPAQHQLLFERFISEERKEPPDIDV 408

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI+++  KYG +R     T    + ++A+R+VG+ + +       L K I 
Sbjct: 409  DFEHERREEVIQHIYQKYGRDRAGLCATVIHYRPRSAIREVGKVMGLSEDVTGALAKTIW 468

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  V  + + +        L+DP + + + ++++L G+ RH S H  G ++ +RPL+
Sbjct: 469  GSWGTDVEARHVGE----AGLELSDPVLRKTILLARQLIGMPRHLSQHVGGFILTERPLT 524

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599
            + VP+      D    +++   I+  G++K D L L  LT ++K  D + A  G    L+
Sbjct: 525  ETVPIGNGAMPDRSFIEWDKDDIDALGILKVDILALGMLTCIRKCFDLIEAHYGQSWTLA 584

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DN 657
             IP +D   Y +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI  D 
Sbjct: 585  SIPQEDSRVYDMLCKGDSIGVFQVESRAQMNMLPRLRPREFYDLVIEVAIVRPGPIQGDM 644

Query: 658  IVVYNNRKNGKEKIVS-----IH--PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            +  Y  R++G+E +        H    +  +L  T GV I+QEQ M+IA   + +S +EA
Sbjct: 645  VHPYLRRRSGEEAVDYPAPAPPHDPQELKNILGRTLGVPIFQEQAMKIAIDAARFSPAEA 704

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LR+AM   + K ++   +++ +    + G  +  A   F+ +  F +YGF +SHAA++
Sbjct: 705  NELRKAMATFRSKGQIGLLEDKMVGRMVERGYEEDFARRCFDQIKGFGEYGFPESHAASF 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++ Y ++W+K H+P  F AA +  +        +  +DA++  +++  P VN    D  
Sbjct: 765  ALLVYVSSWLKCHFPDAFCAALLNSQPMGFYAPAQIVRDAQEHGVEVRAPDVNYSEWDNS 824

Query: 830  V-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +     G   +   L  I G+    A  ++ A  D P+  L+    R     L + V+  
Sbjct: 825  LEPTYAGYFAVRLGLRQIGGLREDMAARLVAAR-DAPYRDLKQLQERA---GLTQPVIRR 880

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKF 943
            L  A A+      R Q L     ++                +F   +    ++   L   
Sbjct: 881  LAEADAMRSMFIDRRQALWEAKALRDA----------PDLPLFRQVRDEGEERPVGLPAM 930

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
             V    V    + + L      HP+   +  L +                 ++LA +V+ 
Sbjct: 931  PVCEQVV---ADYQTLRLSLKRHPMAFLRKSLARQRYTPSSALEGMNNWQRLKLAGLVLI 987

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +Q+  +  G  + ++T  +         +P
Sbjct: 988  RQKPGSANG--VCFITLEDEFGSANLVVWP 1015


>gi|150398216|ref|YP_001328683.1| DNA polymerase III subunit alpha [Sinorhizobium medicae WSM419]
 gi|167016912|sp|A6UDW8|DNAE2_SINMW RecName: Full=Error-prone DNA polymerase
 gi|150029731|gb|ABR61848.1| DNA polymerase III, alpha subunit [Sinorhizobium medicae WSM419]
          Length = 1116

 Score =  759 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/1061 (23%), Positives = 437/1061 (41%), Gaps = 86/1061 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    +F  L   +++S LEGA     ++      +   + I D N++   +    KA  
Sbjct: 1    MSGDTAFYELGACTNFSFLEGAAPAEEMVVFAKKARLAGLGIADRNSVAGVVRAHAKAKM 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
                   G +L                     P ++       G+  L  L+S   L   
Sbjct: 61   ENYPFQPGARLVFA---------------DGTPDVLAYPRNRRGWGHLCRLLSAGNLRS- 104

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                   C   L ++               +         +  +  L   ++  G+RLY+
Sbjct: 105  ---KKGDCTLHLADLLEW-----QEELLLIVMPDRVRPEPESLKPLLGKLQEHAGNRLYL 156

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L   + G+DR+  + +  +A    + L+ATN++L+   +     DV+ A+     V+  
Sbjct: 157  GLAPRYDGFDRHDFAVLATVARKAGIGLLATNDALYHDPDYRPLADVVTAIREHVPVAGA 216

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                    + +LK+  EM  +FSD PEA+ NT +  R  +F L       P     + + 
Sbjct: 217  GFLLQKNAERHLKSPREMARLFSDYPEAIANTQKFFRHLAFSLDELRHQYP-----DENA 271

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +     LR     G   R  +G   K       ++++++EL +I   K+  YFL V  
Sbjct: 272  GGETPAESLRRLVSEGAAERYPEGVPEK------VQRQIEYELELINDKKYEPYFLTVHK 325

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+   I +  GRGS A S   + L ITD+DP +F+LLF+RFL+ DR   PD D+DF
Sbjct: 326  LVKFARSEKI-LCQGRGSAANSSVCFCLGITDVDPQKFTLLFDRFLSKDRDEPPDIDVDF 384

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+EVI+Y+   YG E         S ++++A R+V +A          L   I   
Sbjct: 385  EHERREEVIQYIYRTYGKEHAGLAAAVISYRSRSAGREVAKAFGFSEDVQSALVSSIWGW 444

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               P +     + +R      ADPS  R+L  +  L    RH S H  G VI    L ++
Sbjct: 445  GNSPFT----EEQARGAGLDAADPSTRRVLAYASLLMNYPRHLSQHVGGFVITRDRLDEV 500

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+      D  + +++   +++  ++K D L L  LT L K    L     +       
Sbjct: 501  VPIMNTAMPDRYMIEWDKDDLDELKILKVDVLALGMLTCLAKGFKLLEAHYGEPITLAEI 560

Query: 603  FDD--HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NI 658
            + D     Y ++    T+G+FQ+ES      L  +QP  + D++  V++ RPGPI    +
Sbjct: 561  YQDHQPAVYDMICRADTVGVFQIESRAQMSMLPRLQPREMYDLVIEVAIVRPGPIQGNMV 620

Query: 659  VVYNNRKNGK---EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              Y  R+ G+   EK+    P +  +L+ T GV ++QEQ MQIA   +G+S SEAD LRR
Sbjct: 621  HPYLKRREGQRKGEKVKYPSPELKAVLERTLGVPLFQEQAMQIAITAAGFSPSEADRLRR 680

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AM   K    +   + + + G   NG  +  A   F  +  F +YGF +SHAA++A + Y
Sbjct: 681  AMATFKRTGTIHTFERKMVEGMVANGYEREFAERCFNQIKGFGEYGFPESHAASFASLVY 740

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD------- 827
             +AW+KT+YP  F AA +  +        +  +DAR+  ++++P  +N    D       
Sbjct: 741  ASAWLKTYYPDIFCAALLNAQPMGFYAPAQLVRDAREHGVKVLPVDINHSDWDALLEGEG 800

Query: 828  -FKVG---------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
             F+                    +      +KG+       ++    +  + S+ D   R
Sbjct: 801  QFRKESVDPRHADMREVIKTRKAVRLGFRLVKGLKQADMGALVACRGEG-YRSVHDLWFR 859

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
                 L+R VLE L  A A    G  R   L ++  +       ++    +   +F    
Sbjct: 860  ---SGLSRSVLERLADADAFRSLGLDRRAALWAVKAL-------DEQSAVERLPLFEGAG 909

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                            +  +  ++ R L      HP+   +    + GI    +  AT  
Sbjct: 910  SLDLRAEPKVALPEMPAGEQVIHDYRTLTLSLKAHPVSFMREDFSRTGILRSRDLAATAT 969

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            G  + +A +V+ +Q+  +  G  + ++T  +         +
Sbjct: 970  GKWVTVAGLVLVRQRPGSANG--VIFMTIEDETGIANIIVW 1008


>gi|226228139|ref|YP_002762245.1| error-prone DNA polymerase [Gemmatimonas aurantiaca T-27]
 gi|226091330|dbj|BAH39775.1| error-prone DNA polymerase [Gemmatimonas aurantiaca T-27]
          Length = 1113

 Score =  759 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1062 (25%), Positives = 455/1062 (42%), Gaps = 74/1062 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++SLL+GA     ++ + A+    A+A+TD + +   ++F   A    +  I
Sbjct: 29   YAELHCHSAFSLLDGASLPEQLVTRAASFGYQALALTDHDEMGGIVQFGVAARERQLNAI 88

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L       ++M +           +VLL  T EGY+ +  LV+R  +  + +    
Sbjct: 89   LGVELT------VRMPHLDGQRGDRRTQLVLLAETREGYRNISTLVTRARMDSE-RGRPS 141

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L+ L++    G+  LTGG  G + +         A +       +FG  L +    HR
Sbjct: 142  VPLAMLRQ-HAAGVTALTGGPRGWVPQLLAEGRQYEAFEAAQELHAIFGQHLAIECWDHR 200

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRV 248
              +      Q++ LA    +P V TNN  +   +D   HD L A+ H   + +   R R 
Sbjct: 201  LPEERVLVEQLIPLAKWLGVPWVVTNNVYYAEPKDRAVHDALSALRHQRTLDEMGTRLRP 260

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +  LK+   +   +  L E +  T++IA+RC+F L    P +P F   +        +
Sbjct: 261  NAEWALKDPRLIYQRWRGLEEGVRATLDIAKRCAFRLAGLKPAMPPFPLPDGF----TAD 316

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L    + G   R           +  +RQ++  EL  I R   + +FL V   ++ A+
Sbjct: 317  TYLEEIVLTGARERWGD------RFSDVHRQQIAHELAAIRRRDCATFFLTVWRIVRHAR 370

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I +  GRGS A S   Y L +T +DP+ F LLFERFL  D    PD DIDF    R+
Sbjct: 371  SEGI-LCQGRGSAASSAVCYCLGVTPVDPIYFGLLFERFLGDDATEEPDIDIDFAHRDRE 429

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV- 487
             ++++V   +G E  A +    +   ++A RD  R L     Q D L        AH   
Sbjct: 430  RILQHVYKHFGREHAAMVCEQITWGGRSAARDAARVLGFSPQQGDILADFSDRHGAHTTA 489

Query: 488  -SLQAIADDSRFREAR--LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               +      R   A   L DP V +L  +   L  L RH S H  G V+ D PL  LVP
Sbjct: 490  DLFETAEGQQRLTAAGFDLTDPRVQQLAPVMNGLHELPRHRSIHVGGFVLSDEPLGSLVP 549

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +     +D  V Q+    +   G+ K D LGL  LT++Q  L +L   +   +D++    
Sbjct: 550  IEPASMADRTVIQWEKDDLGPVGMYKIDLLGLGMLTVVQDCLRYLRHTKNTHIDMAHFNM 609

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVY 661
            DD + Y  +    T+G+FQ+ES      L  ++P C  D++  V+L RPGP     +  Y
Sbjct: 610  DDKDVYDTMCRADTVGVFQIESRAQMSTLPRLKPRCFYDLVVEVALIRPGPLQGQMVHPY 669

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KK 720
              R+  +E +   HP + P+L+ T GV I+QEQ MQ+A  ++ ++ ++AD LR+ MG K+
Sbjct: 670  LRRRAKEEAVDYPHPDVKPILERTFGVPIFQEQAMQVAIKMADFTQAQADELRKTMGHKR 729

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K  M K + +   G  K  I   +   I   +  FA +GF +SHAA++A+I Y TA+++
Sbjct: 730  SKVRMKKVERQLRDGMEKKKIDPKVIERICHQINGFAAFGFPESHAASFALIVYATAYLR 789

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---------- 830
             HY  E+L A +  +           +DA++  +++ P  +     D  +          
Sbjct: 790  YHYAPEYLCAILNAQPMGFYAPGTLIEDAKRHGVEVRPVDLMRSGWDHSLELPDGRTLMP 849

Query: 831  --------------------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
                                    +   +  I+ +G+   + +  A AD PF S+ED  S
Sbjct: 850  NDGTILWGPRHTIDATQTSAEHVAVRLGVRLIRNLGSKARKVLEAALADGPFRSIEDAVS 909

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RV       R L     AGALD          +  +  ++ A W     T +        
Sbjct: 910  RVTLDARGWRAL---AEAGALDSMFAH-----EPPERRRRVALWEVLALTKEPP----LP 957

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT- 989
                         +          + R+ G    GHP+   +P+L   G++  ++     
Sbjct: 958  LAPPRRAPPPTSLAACTPVELTAADYRMTGVSLVGHPMKHARPVLEPNGVRTIQDIQQHG 1017

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
              G  + +A +V+ +Q+  T KG    ++T  +         
Sbjct: 1018 KDGETVAIAGVVICRQRPPTAKG--FVFLTLEDETGMLNIII 1057


>gi|315179595|gb|ADT86509.1| hypothetical DNA polymerase III alpha chain [Vibrio furnissii NCTC
            11218]
          Length = 1023

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/1038 (25%), Positives = 445/1038 (42%), Gaps = 88/1038 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA--GIQ 68
            +  L   S++S L GA     ++ +    +  AIAITD  +L   +           GI+
Sbjct: 3    YAELFCQSNFSFLTGASHPEELVIQADFLRYHAIAITDECSLAGVVRAHTAIKQQQLGIK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G    ++ +                   VLL    + Y  L  +++      +  Q 
Sbjct: 63   QIVGSLFQLNDECRF----------------VLLCPNQDAYAELCRIITNARRRSEKGQY 106

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                  W        L++            +  + ++  +       +    RL++ +QR
Sbjct: 107  K--LSEWDVMSARHCLVI------------WLPSHTERDKHWGQWLTQHHPHRLWLGVQR 152

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRP 246
            H G  D         LA   +LP+ A    L  +        +L A+     V   +   
Sbjct: 153  HLGPQDNAYLDHCRTLAQAFDLPITACGGVLMHNATRLPLQHILTAIQRGQPVEHIQAHL 212

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +  L++++++  +F   PE L+ +V IA RC F L       P  +  +       
Sbjct: 213  VSNTERALRSQAKLSKLFP--PEWLQESVRIAERCEFQLGSLHYRYPSELVPD----DHT 266

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     G  +R   G  A      D    ++ EL +I  +    YFL + D + +
Sbjct: 267  PMAYLRQLVEQGKALRFPHGVPA------DINATIEKELALIDELDLPYYFLTIHDIVMF 320

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+N I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +R
Sbjct: 321  AKRNGILY-QGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERQEPPDIDVDFEHER 379

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  +Q+D   K + N     
Sbjct: 380  REEVIQYLYRKYGRERAALAATVISYRFKSAVRDVGKALGIHEAQLDFFIKNV-NRRDRG 438

Query: 487  VSLQAIADDSRFREARLADPSVD--RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            +  QA     +  E  L   S+   + +E+  +L G  RH S H  G VI   PL +LVP
Sbjct: 439  LGWQA-----QLTELGLEPQSLKGQQFIELVNELIGFPRHLSQHVGGFVISSGPLYELVP 493

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA---QRGVKVDLSLI 601
            +      +  + Q++   +E  GL K D L L  LT ++K    +    QR + +     
Sbjct: 494  VENAAMPERTIIQWDKDDLESLGLFKVDVLALGMLTAIRKCFTCIEQQYQRKLSIADITR 553

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
              DD   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI  D + 
Sbjct: 554  LQDDANVYGMIQRADTIGVFQIESRAQMSMLPRLKPRCYYDLVIQIAIVRPGPIQGDMVH 613

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R++G E +      ++ +L+ T GV I+QEQV++IA + +G+S  EAD LRRAM  
Sbjct: 614  PFLKRRDGIEDVTYPSKEVEAVLQRTMGVPIFQEQVIKIAMVAAGFSGGEADQLRRAMAS 673

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K   E+ K + + I+G    G     A  I++ +  F +YGF +SH+A++AV++Y +AW
Sbjct: 674  WKKTGELAKFRTKLINGMLARGYELAFAERIYDQICGFGEYGFPESHSASFAVLAYCSAW 733

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----R 834
            +K +YP  F  A +           +  QDA++  I+++P  VN    D +V ++     
Sbjct: 734  LKYYYPEAFYTALLNSLPMGFYSASQLVQDAQRHGIKVLPVCVNASQWDHQVVEHEQQQA 793

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +   L  +KG     A+ ++ A   + F       +++    L ++ +ESL  A AL  F
Sbjct: 794  MRLGLRQVKGFSEQGAQLLLNARPAQGFH----HPAQLKRCGLTQKDMESLASANALHSF 849

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
             ++R     S+                  +++         D+  L  +   +       
Sbjct: 850  AHNRYATRWSM-----------------MDSLSDLPLFEQLDEAALALYQQPSDMDTLIE 892

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +   LG   + HP+ +              +       + + +A +V  +Q   T  G  
Sbjct: 893  DYASLGLSLTQHPVTLLDTAGELGSFSRMRDLAQLPHKSLVTVAGIVTGRQSPGTAAG-- 950

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + + T  +         +
Sbjct: 951  VTFFTLEDDTGNINVVVW 968


>gi|259415528|ref|ZP_05739449.1| error-prone DNA polymerase [Silicibacter sp. TrichCH4B]
 gi|259348758|gb|EEW60520.1| error-prone DNA polymerase [Silicibacter sp. TrichCH4B]
          Length = 1126

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/1061 (25%), Positives = 440/1061 (41%), Gaps = 86/1061 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS------QKA 62
            P +  L V S+++ L GA     ++ + A     AIAITD N+L   +         ++ 
Sbjct: 25   PGYAELCVTSNFTFLTGASHPEELMTRAAELGLAAIAITDRNSLAGVVRAWSALKELRRE 84

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI------------------VLLVS 104
              AG+Q  I     ID      + N      P  P +                  + L  
Sbjct: 85   AEAGVQ--IRSHQRIDPSSRQDIGNAATLEKPATPILPKLIVGCRLVLRDSQTDWIALPR 142

Query: 105  TAEGYQRLIELVSRMYLLDQGKQSVRICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNS 163
                Y RL  L++        K    +    L        LI L         +A     
Sbjct: 143  DRTAYSRLTRLLTLGKRR-APKGECHLDTKDLMASCRGMTLIAL--------PQAELK-- 191

Query: 164  SQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
               A   +   ++ F   +++     + G D+   +   Q A     P+VA  + L    
Sbjct: 192  --TAIPDIRRMQQAFPHHVFLGAAPRYDGSDQAYLAACAQAAQVTSAPMVAVGDVLMHRA 249

Query: 223  EDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
                  DVL  +     + +   R  +  +  LK  ++M  +F   P AL  T+EIA  C
Sbjct: 250  SRRPLADVLTCMREHITIDEIGSRALLNSERRLKAGADMARLFRAHPGALRRTLEIADTC 309

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            SF L   +   P  I        +  +  L   A  GL+ R   G   K          +
Sbjct: 310  SFDLGELSYDYPHEIVD-----GETPQVRLERLAAKGLKRRYPDGPPEKAITL------M 358

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
              ELN++A + F+ YFL V D +Q+A+  NI +  GRGS A S+  Y L ITD+ P   +
Sbjct: 359  KKELNLVADLGFAAYFLTVHDIVQYARSQNI-LCQGRGSAANSILCYLLGITDVSPDMIT 417

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            ++FERF++  R   PD D+DF  +RR+EVI+++  KYG ER     T    +++AA+R+V
Sbjct: 418  MVFERFVSRYRGEPPDIDVDFEHERREEVIQWIYQKYGRERAGLCATVIHFRSRAAIREV 477

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            G+ + +       L   I       V L+ I +        + D  + + + +   + G 
Sbjct: 478  GKVMGLSQDVTAGLSGQIWGMSNGGVDLKRIEELG----LNIQDRRLMQTIRLIGDIIGF 533

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             RH S H  G VI    L +L P+      D  V +++   I+  G++K D L L  LT 
Sbjct: 534  PRHLSQHVGGFVITRGRLDELAPIENAAMEDRTVIEWDKDDIDALGILKVDVLSLGMLTC 593

Query: 582  LQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            LQK+   L         ++ +P  D  TY +L     +G+FQ+ES      L  M+P   
Sbjct: 594  LQKAFALLQTHEGETWSIASVPQGDQPTYDMLCRADAVGVFQVESRAQMNFLPRMRPQEF 653

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
             D++  V++ RPGPI  D +  Y  R++G E+     P ++ + K T GV ++QEQ MQI
Sbjct: 654  YDLVIEVAIVRPGPIQGDMVQPYIRRRHGLEEPEPFGPELEQVTKRTLGVPLFQEQAMQI 713

Query: 699  AQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            A + +G++  EAD LRR++   +    +   +++FI+G      +  +A   F  +  FA
Sbjct: 714  AVVGAGFTPEEADHLRRSLASFRRMGTIGTFRDKFINGMLDKDYAPEVAARCFSQIEGFA 773

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            DYGF +SHAAA+A+++Y +AW+K HYP  F  A +  +        +  +DAR+  ++I 
Sbjct: 774  DYGFPESHAAAFAMLAYVSAWLKCHYPAVFACALLNSQPMGFYAPAQIVRDAREHGVEIR 833

Query: 818  PPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            P  VN    D ++     G   +      IKG     A  I  A  +  +   +    R 
Sbjct: 834  PICVNASDWDNQLERRPDGALALRLGFRQIKGFREEDAGWITAARGNG-YPDPDTLWLRA 892

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
              +     VL  L  A A    G +R   L  +  I          R+ +   +F     
Sbjct: 893  GVR---PDVLTRLAEADAFSDMGLTRRDALWQVKAI----------RSPQPLPLFNDPID 939

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
              S         V +       +          HP+++ +P L   G+  +        G
Sbjct: 940  GESISEPSVDLPVMHLGEEVVEDYVATRLTLRAHPMELLRPSLP--GLTPHAALQTVPLG 997

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +  +  +V+++Q+  T  G  + ++T  +         +P
Sbjct: 998  RHA-VCGLVITRQRPGTASG--VIFLTLEDETGVSNIVVWP 1035


>gi|227823700|ref|YP_002827673.1| DNA polymerase III, alpha subunit [Sinorhizobium fredii NGR234]
 gi|254777927|sp|C3M9Z5|DNAE2_RHISN RecName: Full=Error-prone DNA polymerase
 gi|227342702|gb|ACP26920.1| DNA polymerase III, alpha subunit [Sinorhizobium fredii NGR234]
          Length = 1117

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/1061 (24%), Positives = 444/1061 (41%), Gaps = 86/1061 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P+F  L   +++S LEGA     ++          + + D N++   +    KA  
Sbjct: 1    MSGEPTFHELGARTNFSFLEGAAPAEEMIVFAKKAGLSGLGVADRNSVAGVVRAHAKAKV 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
                   G +L                     P I+       G+  L  L+S   L  +
Sbjct: 61   EDYPFQPGARLVFA---------------DATPDILAYPKNRRGWGHLCRLLSVGNLRAK 105

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K    + L+ L E   + L+++  G   P          ++ E  L   K   G+RLY+
Sbjct: 106  -KGDCTLYLADLLEWQEDLLLIVMPGEGRP--------QPEILEALLEKLKASAGNRLYL 156

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L   +  +DR+  + +  +A + ++ L+ATN++L+         DV+ A+     ++  
Sbjct: 157  GLAPRYDSFDRHDFAVLATVARSLDVRLLATNDALYHDPHYRPLADVVTAIREHVPIASA 216

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                    + +LK   EMV +F D PEA+ N  +  +R SF L   +   P    +    
Sbjct: 217  GFLLQKNAERHLKGPKEMVRLFRDYPEAIVNANKFFKRLSFSLDELSHQYPDENAE---- 272

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +     LR     G   R   G   K        +++++EL +I   K+  YFL V  
Sbjct: 273  -GETPAESLRRLVAEGALERYPSGVPEK------VTRQIEYELELIHDKKYEPYFLTVHK 325

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+  NI +  GRGS A S   + L ITD+DP +F+LLF+RFL+ DR   PD D+DF
Sbjct: 326  LVKFARSVNI-LCQGRGSAANSSVCFCLGITDVDPQKFTLLFDRFLSRDRDEPPDIDVDF 384

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+EVI+Y+   YG E         S ++++A R+V +A  +       L   +   
Sbjct: 385  EHERREEVIQYIYRTYGKEHAGLTAAVISYRSRSAGREVAKAFGLSEDVQSALVSSVWGW 444

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               P +     + ++     +ADP   R+L  +  L    RH S H  G VI    L ++
Sbjct: 445  GTSPFT----EEQAKGAGLDMADPLTRRVLAYASLLMNFPRHLSQHVGGFVITRDRLDEV 500

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+      D  + +++   +++  ++K D L L  LT L ++  FL     K       
Sbjct: 501  VPIMNTAMPDRYMIEWDKDDLDQLKILKVDVLALGMLTCLARAFRFLEVHYGKPKTLAEL 560

Query: 603  FDDH--ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NI 658
            ++D     Y ++    T+G+FQ+ES      L  ++P  + D++  V++ RPGPI    +
Sbjct: 561  YEDQQAAVYDMICRADTVGVFQIESRAQMSMLPRLRPREMYDLVIEVAIVRPGPIQGNMV 620

Query: 659  VVYNNRKNGK---EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              Y  R+  +   E +    P +  +L+ T GV ++QEQ MQIA   +G+S SEAD LRR
Sbjct: 621  HPYLKRREAQRKGEPVDYPSPELKAVLERTLGVPLFQEQAMQIAITAAGFSPSEADRLRR 680

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AM   K    +   + + I G  +NG  +  A   F  +  F +YGF +SHAA++A + Y
Sbjct: 681  AMATFKRTGTIHTFERKMIDGMVRNGYEREFAERCFNQIKGFGEYGFPESHAASFASLVY 740

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD------- 827
             ++W K +YP  F AA +  +        +  +DAR+  ++I+P  VN    D       
Sbjct: 741  ASSWFKAYYPDIFCAALLNSQPMGFYAPAQLVRDAREHGVRILPVDVNHSDWDALLEGEA 800

Query: 828  -FKVGD---------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
             F+                    +      +KG+       ++    +  + S+ D   R
Sbjct: 801  MFRKEAIDPRHGEMRDVIRSGKAVRLGFRLVKGLRQPDMEALVARRGEG-YRSVHDLWLR 859

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
                 L R VLE L  A A    G  R + L ++  +        +    +   +F    
Sbjct: 860  ---SGLTRAVLERLADADAFRSIGLDRRRALWAVKAL-------NEQSAVERLPLFDGAG 909

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
             T              +     ++ R L      HP+   +    +MGI    +   T  
Sbjct: 910  STDLQVEPAVALPDMAAGEHVIHDYRYLTLSLKAHPVSFMRGDFARMGILSSRDLARTPA 969

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            G  + +A +V+ +Q+  +  G  + ++T  +         +
Sbjct: 970  GRRVTVAGLVLVRQRPGSANG--VIFMTIEDETGVANIIVW 1008


>gi|166711029|ref|ZP_02242236.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzicola
            BLS256]
          Length = 1083

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/1050 (25%), Positives = 459/1050 (43%), Gaps = 93/1050 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + +   G++
Sbjct: 46   PTYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRVTGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL--DQGK 126
             I+G +  +                      VLLV  A GY +L  LV+           
Sbjct: 106  LIVGSEFTLIDGTRF----------------VLLVENAHGYPQLCGLVTTARRAASKGAY 149

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            +  R  +         G+  L           +       AE+     +++FG+R ++ +
Sbjct: 150  RLGRADVEAQFRDVAPGVFAL-----------WLPGVQPQAEQGA-WLQQVFGERAFLAV 197

Query: 187  QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            + HR  D   R   +  LA    +  VA+ +       +    D L A+ H+  +++   
Sbjct: 198  ELHREQDDGARLQALQALAQQLGMTAVASGDVHMAQRRERIVQDTLTAIRHTLPLAECGA 257

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  + +L+ R  + +I+ D        V +A+RC+F +   +   PR +  E     
Sbjct: 258  HLFRNGERHLRTRRALGNIYPDALLQAA--VALAQRCTFDISKISYTYPRELVPEG---- 311

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR    AG+  R   G  AK       R+ ++ EL +IA  K+  +FL V D +
Sbjct: 312  HTPTSYLRQLTEAGIRKRWPGGITAK------VREDIEKELALIALKKYEAFFLTVQDVV 365

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A++ NI +  GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF  
Sbjct: 366  RFAREQNI-LCQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEH 424

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L         
Sbjct: 425  ERREEVLQYVYRKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNG 484

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 Q I +        LA+P ++++L +++ L    RH S H  G VI D PLS LVP
Sbjct: 485  ETPMEQRIEE----AGFDLANPLINKILLVTEHLCDHPRHLSQHVGGFVISDEPLSLLVP 540

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPF 603
            +     +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P 
Sbjct: 541  VENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRCHRGRDYSIATLPG 600

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y
Sbjct: 601  EDLPTYKMIQRADTVGVFQIESRAQMAMLPRLKPAKFYDLVIEVAIVRPGPIQGDMVHPY 660

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R+ G+E +    P ++ +LK T GV ++QEQVM++    + Y+ SEAD LRR+M    
Sbjct: 661  LRRRQGREDVSYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYTESEADNLRRSMAAWR 720

Query: 722  K-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            +  +M++ + R        G + T    IFE +  F  YGF +SHAA++A + Y + W+K
Sbjct: 721  RGGDMEQHRTRVRERMQGKGYASTFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLK 780

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDAR-----QFNIQIMPPSVNTPCVDFKVGDNRI 835
             H P  F    +  +        +  QDAR     +  ++++P  V     D  +   R 
Sbjct: 781  RHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVVHSDWDNTLVGGRP 840

Query: 836  Y-------------YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
            +               +  + G+    A+ I+ A   + F  + D C R     L+ +  
Sbjct: 841  WRSAADPGEQPAIRLGMRQVAGLSDVVAQRIVAARTQRAFADIGDLCLRA---ALDEKAR 897

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
             +L  AGAL     +R     ++  +                 +     G+  ++     
Sbjct: 898  LALAEAGALQGMVGNRNAARWAMAGV------------EARRPLL---PGSPEERPV--A 940

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            F   ++      + R +G     HP+ + +P +R+  I G  +      G+ + +A +V 
Sbjct: 941  FEAPHAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLHDLQGRPHGSGVHVAGLVT 1000

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +Q+  T KG+   +VT  +         +
Sbjct: 1001 QRQRPATAKGT--IFVTLEDEHGMINVIVW 1028


>gi|89054049|ref|YP_509500.1| DNA polymerase III, alpha subunit [Jannaschia sp. CCS1]
 gi|88863598|gb|ABD54475.1| error-prone DNA polymerase, DnaE-like protein [Jannaschia sp. CCS1]
          Length = 1097

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/1049 (24%), Positives = 441/1049 (42%), Gaps = 84/1049 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +V L + + +S L GA    ++           +   D N +   +    +A  A I P
Sbjct: 22   DYVELGLTTCFSFLHGASDAVDLATTAHGLGYDKLGCADLNTMAGVVRLHAEALKAQITP 81

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-----Q 124
            +IGC+L +   ++                 +        Y RL  L+S+  + D     Q
Sbjct: 82   VIGCRLRLVTGEDF----------------LAYPRDRAAYGRLCTLLSKGKMTDVDGAWQ 125

Query: 125  GKQSVRICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             K +  I L  L        LI L G          F    +   + L T + +    LY
Sbjct: 126  AKGACDITLDDLAGHSKDVQLIALPGPR-----LDHFEAGFKRLIRALPTLRHIAVSYLY 180

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                   G DR R +++ +LA  H L ++ATN+  + + +     DV+  + H T + + 
Sbjct: 181  ------EGDDRARINRLDRLAQAHGLGIMATNDVRYHAPDRRPLQDVMTCILHKTTIQKA 234

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                    + +LK+ ++M+ +F+  P A+  T  IA  C+F L+  A   P+    E   
Sbjct: 235  GFLLNANAERHLKSPAQMIQLFAQWPHAIRATRAIADACTFDLRELAYEYPKETVPEG-- 292

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +  +  L      G   R   G              L  EL +I +M    YFL +  
Sbjct: 293  --RTPQGYLEELTWKGAARRYPDGI------PDAISTTLRKELALIKKMDIPQYFLTIEQ 344

Query: 363  FIQWAKKNNIP--VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             + +A+    P  +  GRGS A S   Y L IT +DP    LLFERF++ +R   PD D+
Sbjct: 345  IVDYARHKCDPPILCQGRGSAANSAVCYVLGITAVDPNTNDLLFERFISEERKEPPDIDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI+++ N+YG +R A   T    + + A+R+VG+ + +       L K I 
Sbjct: 405  DFEHERREEVIQHIYNRYGRDRAALCATVIHYRPRMAVREVGKVMGLSEDITSALAKTIW 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  V  +  A+        L DP + R ++++ ++ G+ RH   H  G ++ ++ L+
Sbjct: 465  GSWGREVGAREAAE----AGIDLKDPLMARTIKLADQMIGMPRHLGQHVGGFILTEKKLN 520

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
            + VP+     +D    +++   I++  ++K D L L  LT ++K+ D +       + L+
Sbjct: 521  ETVPIGNGAMADRTFIEWDKDDIDELRILKVDILALGMLTCIRKAFDLIKAHYGRTLTLA 580

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DN 657
             I   D  TY +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D 
Sbjct: 581  SIEQGDRATYDMLCKGDSLGVFQVESRAQMNMLPRLKPREFYDLVIQVAIVRPGPIQGDM 640

Query: 658  IVVYNNRKNGKEKIVSIHP-------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            +  Y  R+ GKE      P        +  +L  T+GV I+QEQ M++A + + +S  EA
Sbjct: 641  VHPYLRRRAGKEPEDYPSPKPPHDPEELRKVLSRTKGVPIFQEQAMKLAMVAAEFSPDEA 700

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LR+AM   + K  + + +E+ +S     G     A   F  +  F DYGF +SHAA++
Sbjct: 701  NQLRKAMATFRSKGTIGELEEKMVSRMINRGYDPEFAHRCFNQIKGFGDYGFPESHAASF 760

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A + Y ++W+K HYP  F AA +  +        +  +DAR+  + +    VN    D  
Sbjct: 761  AHLVYISSWIKCHYPDVFCAALLNSQPMGFYAPAQIVRDAREHGVIVRAADVNYSGWDTT 820

Query: 830  V-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +     G   +      I G+    A  I+ A    PF  L D   R  +   + R L +
Sbjct: 821  LEPVGQGQFAVRLGQRQIDGMRQDVADRIVTAR-HTPFTDLIDLRQRAQTDAGSLRKLAA 879

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
               A A+      R Q L           W  +   +  +     E+    D+I      
Sbjct: 880  ---ADAMRSMMLDRRQAL-----------WETRALHDAQDLPLFAEQKDEGDEIRF-DLP 924

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                      + +        HP+   +  + + G            G +++LA +V+ +
Sbjct: 925  EMPICEHVVADYQTTRLSLKAHPMSFLRKSMERQGYHHTGALAHMRNGQSVKLAGIVLIR 984

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG  + ++T  +         +P
Sbjct: 985  QRPGSAKG--VCFITVEDEIGVANLVVWP 1011


>gi|115523844|ref|YP_780755.1| error-prone DNA polymerase [Rhodopseudomonas palustris BisA53]
 gi|122296746|sp|Q07QK9|DNAE2_RHOP5 RecName: Full=Error-prone DNA polymerase
 gi|115517791|gb|ABJ05775.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisA53]
          Length = 1153

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/1102 (24%), Positives = 445/1102 (40%), Gaps = 122/1102 (11%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  + V S++S LEG       + + +A    AI I D N L   +    +     +
Sbjct: 3    APRYAEIGVTSNFSFLEGGSHPQEFVQQASALGLAAIGIADRNTLAGVVRAYSELDNEEL 62

Query: 68   --QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
              +P +     +   D               P I+   +    Y RL  L+S   L   G
Sbjct: 63   FYKPKLLIGARLCFADG-------------TPDILAYPTDRAAYGRLCRLLSAGKLR-AG 108

Query: 126  KQSVRICLSWLQEI------GTEGLIMLTGGSSGPIDR---AFFFNSSQVAE-------- 168
            K    +  + L+           GL   +  SS  +     A        A+        
Sbjct: 109  KGECHLSFADLEAFTKTSTPSWPGLSRPSTSSSKAVQVSVDARVKPGHDEAKRAAGESRL 168

Query: 169  ----------------KRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPL 211
                              L     L G  +++ L   +RG D+ R +++ ++A    +P 
Sbjct: 169  LLVLMPPYRFQSHEITAALTRLTALQGAGVWLALVPYYRGDDKRRLARLQRIAAAARVPG 228

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEA 270
            +A+N+ L+  E      DVL  V   T + +  R   +  + YLK   EM  +F   P+A
Sbjct: 229  IASNDVLYHHESRRALQDVLTCVRDKTTIDKAGRLLESNAERYLKPTEEMARLFRADPDA 288

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
            +  T+  A R SF L       P           K  +  L++    G+      G  AK
Sbjct: 289  IAETLRFADRISFTLDELKYQYPDEPVPPG----KTAQQHLKDLTEQGIAEYFPNGIDAK 344

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                   R  +D EL +IA  +++ YFL V D +++A+  NI +  GRGS A S   Y L
Sbjct: 345  ------LRATIDKELTIIAHRQYAPYFLTVHDIVRYARSQNI-LCQGRGSAANSAVCYVL 397

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             IT +DP    LLFERF++ +R   PD D+DF   RR+EV++Y+  +YG  R A + T  
Sbjct: 398  GITCVDPTEIDLLFERFVSEERDEPPDIDVDFEHSRREEVMQYIYRRYGRHRAAIVSTVI 457

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSV 508
              + ++A+RDVG+AL +       L   +       +      ++ + R+A L   +P +
Sbjct: 458  HYRPRSAIRDVGKALGLSEDVTAALADTVWGSWGKGL------NEMQVRQAGLDPTNPMI 511

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
             R ++++ +L G  RH S H  G V+    L + VP+      +    +++   I+   +
Sbjct: 512  VRAIDLATELIGFPRHLSQHVGGYVLTQDRLDEFVPIGNAAMEERTFIEWDKDDIDAVKM 571

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL-IPFDDHETYHLLTTKGTLGIFQLESS 626
            +K D L L  LT ++K  D +AQ    + +L+     DD+E Y +L    ++G+FQ+ES 
Sbjct: 572  MKVDVLALGMLTCIRKGFDLIAQHKGKRYELADIKSEDDNEVYKMLQRGESVGVFQVESR 631

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-------- 676
                 L  ++P C  D++  V++ RPGPI  D +  Y  R+NG+E +V   P        
Sbjct: 632  AQMNMLPRLRPRCFYDLVIEVAIVRPGPIQGDMVHPYLRRRNGQEPVVYPSPAGHAGEAN 691

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISG 735
             +  +L +T GV ++QEQ M+IA   + ++  EA+ LRRAM   +    + K + +    
Sbjct: 692  ELKTILGKTLGVPLFQEQAMRIAIEAAHFTPDEANQLRRAMATFRNVGTIGKFEAKMTGN 751

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                G     A N FE +  F  YGF +SHAA++A + Y +AW+K  +P  F  A +  +
Sbjct: 752  LVARGYDPVFAQNCFEQIKGFGSYGFPESHAASFAKLVYVSAWLKHAHPDAFCCALLNSQ 811

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYYSLAAIKGVG---- 846
                    +   DARQ  ++I    V        +       + +      I G      
Sbjct: 812  PMGFYAPAQIVGDARQNGVEIRGVDVAYSFSQNTLEERCGQHHAVRLGFRQIDGFRWADF 871

Query: 847  --------------TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
                                I+EA    PF SLE F     +  L +R L  L  A A  
Sbjct: 872  DEANLWQARGDAPPEDWGARIVEAREKSPFTSLEQFAR---ATALPKRALILLADADAFR 928

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                 R   L ++  +                 +F   K             +   +   
Sbjct: 929  SLKLDRRAALWAVRRLPDDV----------PLPLFEVAKAREQQDENAAPLPLMPLAEHV 978

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRK 1011
              + + +     GHP+   + +    G+        T R G   R A +V+ +Q+  + K
Sbjct: 979  VADYQTVRLSLKGHPMQFLRALFAAEGVNTCRAVSETRRNGRRARCAGVVLVRQRPGSAK 1038

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  + ++T  +         +P
Sbjct: 1039 G--VVFITLEDETGIANLVVWP 1058


>gi|312196206|ref|YP_004016267.1| DNA polymerase III subunit alpha [Frankia sp. EuI1c]
 gi|311227542|gb|ADP80397.1| DNA polymerase III, alpha subunit [Frankia sp. EuI1c]
          Length = 1213

 Score =  757 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/1118 (25%), Positives = 463/1118 (41%), Gaps = 123/1118 (11%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             L  HS++S L+GA    +++++ A     A+A+TD + ++  + F++ A   G++ + G
Sbjct: 67   ELHCHSAFSFLDGASQPEDLVEEAARLGLSALALTDHDGMYGVVRFAEAAEQVGLRTLYG 126

Query: 73   CQLDIDMQDNLKMTNQG----------------------KTPFPTVPSIVLLVSTAEGYQ 110
             ++ +    +  +                            P P    +++L  T EGY+
Sbjct: 127  VEVSLAPGPDRPVPGPDTGEPRPGPRRPGPPGEAPAPRPGVPDPVGDHLLVLARTPEGYR 186

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEK 169
            RL   VS  +L    K      L  L     +G   +LTG   G +  A        A  
Sbjct: 187  RLSRAVSDAHLAGGEKGRPLTSLDVLAAAAGDGHWQILTGCRKGLVPAALAAGGLDAARV 246

Query: 170  RLLTFKKLF-GDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
             L      F  D + V L  H    D  R   +  LA    L  VATNN  + +      
Sbjct: 247  ALDGLVGRFGRDNVAVELWDHAHPLDSDRNDALYGLAQEAGLTCVATNNVHYATPSAGRL 306

Query: 228  HDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
              V+ ++     + + D         +L++ +EM   F+  P A+E    +    +F L+
Sbjct: 307  AAVMASIRARRSLDEMDGHLPPAGAAHLRSGAEMTDRFARYPGAVEAAARVGTESAFNLR 366

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
            + AP LP F           E + LR   + G   R   G   +      Y  +L  EL 
Sbjct: 367  LVAPRLPDFPVPPG----HTEASWLRLLTMQGAARRY--GPPVRERVGGAY-DQLAHELT 419

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            +I  + F GYFLIV D +++ ++ +I +  GRGS A S   YAL IT +D + F LLFER
Sbjct: 420  LIESLGFPGYFLIVHDIVEFCRREDI-LCQGRGSAANSAVCYALGITGVDAVSFGLLFER 478

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL P+R   PD D+D    RR+EVI+YV  +YG +R AQ+    S ++++A+RDV RAL 
Sbjct: 479  FLAPERDGPPDIDLDIESGRREEVIQYVYGRYGRDRAAQVANVISYRSRSAVRDVARALG 538

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE------------- 513
                Q D     I      P +       +         P   + +E             
Sbjct: 539  FSPGQQDAWSSGIDRWSPLPAAAPPAPPAAVPAVPAAVTPGPGQAVEPADRIGTAIPVEV 598

Query: 514  --ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
              ++ +L G  RH   H+ G+VI DRP++++VP+         V Q++      AGL+KF
Sbjct: 599  VGLAGQLLGFPRHLGIHSGGMVICDRPVAEVVPVEWARMPGRTVIQWDKDDCAVAGLVKF 658

Query: 572  DFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            D LGL  L  L  +   +       +DL  IP +D   Y +L    ++G+FQ+ES     
Sbjct: 659  DLLGLGMLGALHLAFALIRDHHGRHLDLGEIPPEDPAVYDMLCAADSIGVFQVESRAQMA 718

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
             L  ++P    D++  V+L RPGPI       Y  R+N  E++   HPL++  LK+T G+
Sbjct: 719  TLPRLRPRRFYDLVVEVALIRPGPIQGGSVHPYIRRRNDLEEVTYPHPLLERSLKKTLGI 778

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEMDKQKERFISGASKNGISKTIAV 747
             ++QEQ+MQ+A  ++G++ +EAD LRRAMG K   E +D+ +ERF  G + NGI+   A 
Sbjct: 779  PLFQEQLMQMAIDVAGFTAAEADQLRRAMGAKRATERIDRLRERFYQGMATNGITGAAAD 838

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++  LA FA++GF +SH+ ++A + Y +AW+K +YP  F AA +  +       +    
Sbjct: 839  ELYTKLAAFANFGFPESHSVSFAFLVYASAWIKLYYPAAFCAALLNAQPMGFYSPQSLVA 898

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL---------------------------- 839
            DAR+  + +  P +N       +        L                            
Sbjct: 899  DARRHGVTVHGPDLNASGAGAILTGEGRPAGLAEPVWDGEPAGEPVGDVPAPARIGVGAA 958

Query: 840  -------------------------AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
                                     A ++ +GT  A  I+ A     P+  + D   R  
Sbjct: 959  AGQAPPNGEADGLTGPRHPAVRLGLAGVRLIGTANAERIVAARDVGGPYRDMADLARRT- 1017

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
               L    LE+L  AGA  CFG +R +           A    +    +   +       
Sbjct: 1018 --GLAAAQLEALATAGAFGCFGLARRE-----ALWAAGAAAQARPDRLEGTALVGDPAAV 1070

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
             +           + +     +    G   S +P +  +  L  +G+             
Sbjct: 1071 AA------HLPGMSGAEEIVADLWATGITPSRYPTEFVRDRLDALGVVVATRLARLPGDR 1124

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             + +A +V  +Q+  T  G+   ++   +         
Sbjct: 1125 RVVVAGVVTHRQRPATAGGTT--FLNLEDETGLVNVIC 1160


>gi|182415861|ref|YP_001820927.1| DNA polymerase III, alpha subunit [Opitutus terrae PB90-1]
 gi|177843075|gb|ACB77327.1| DNA polymerase III, alpha subunit [Opitutus terrae PB90-1]
          Length = 1116

 Score =  757 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/1082 (26%), Positives = 479/1082 (44%), Gaps = 85/1082 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +V L   S++S L GA    ++  + A    PA+AI D + +++A    Q A    ++ 
Sbjct: 9    DYVELHASSAFSFLRGASQPEDLAAEAARLGLPALAIADRDGVYAAARLYQAARELQLRA 68

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA-------EGYQRLIELVSRMYLL 122
            I+G ++ ++    L +     T +  +  ++             E ++R   LV+     
Sbjct: 69   IVGAEVTLEDGTALPLLVTNGTGYANLCRLISTAKLEPREAAVVEAWRREHPLVTPADSH 128

Query: 123  DQGKQSVRICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-G 179
            +  +   R C +  +E+    EGLI LTG   GP+  A+    +  A       + +F  
Sbjct: 129  EDPRARKRPCFATWRELAEHAEGLIALTGDEDGPVLSAWRNRGADAAAAVAARLQTIFGA 188

Query: 180  DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            DRLYV LQR R   +      +  LA   +LPL+AT    + +  +    DV   +   T
Sbjct: 189  DRLYVELQRRRQRGEDTALCFLADLAAARQLPLLATGGVRYATRAERPIADVFTCLREHT 248

Query: 239  VVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             +    R      + +L++   M  +F D PEA+ N++ +A R  F LQ      P F  
Sbjct: 249  TLDAAGRLLSPNAERHLRSGRAMAELFQDYPEAVVNSLRLAERLDFTLQNLDYRFPDFPV 308

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               + +    E+ LR +  AG   R+       G      R +LD EL +I ++ F GYF
Sbjct: 309  GPGETM----ESVLREQTYAGARERI-------GELTPKLRAQLDRELAMINKLGFPGYF 357

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM---- 413
            LIV D  QW  +  I +  GRGS A S   YAL IT ++PLR+ LLFERFL+  R+    
Sbjct: 358  LIVWDICQWCHQRGILI-QGRGSAANSAVCYALGITAVNPLRYRLLFERFLSEGRVGKDG 416

Query: 414  --SMPDFDIDFC-QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
              S PD D+D    D R+ VI+ +  +Y     A +    + + ++A R++G+ L +P  
Sbjct: 417  HPSWPDIDLDLPSGDLRESVIQEIYQRYAPRGAAMVANVITYRGRSAAREIGKVLGLPGD 476

Query: 471  QVDRLCKLIPN-DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
             +DR   L  N D  H + L   A   +        P +  +L + ++++GL RH   H+
Sbjct: 477  VLDRFSALYANGDFPHTLDL---AQQVKLSGLPGGHPRLPAMLALYRQMQGLPRHLGQHS 533

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G+V     L ++VP+         V Q++    E+ GL+K DFLGL  + +LQ +    
Sbjct: 534  GGMVFCPNRLDRVVPIENASMEGRRVVQWDKDDCEELGLVKVDFLGLGMMAVLQDAFALC 593

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
             QRG  + L  +P +D ET   +    T+G+FQ+ES   +  L  +QP    D+   VS+
Sbjct: 594  TQRGEPLTLHTVPPEDPETLATIRRADTIGVFQVESRAQQATLPRLQPQNFYDVAIAVSI 653

Query: 650  YRPGPIDNIVVY--NNRKNGKEKIVSIH----PLIDPMLKETQGVIIYQEQVMQIAQLLS 703
             RPGPI   V +    R+ G+EK+V +      L+ P+L+ T GVI++QEQ+++ A +L+
Sbjct: 654  VRPGPIAGRVSHPLIKRRAGEEKVVYLDESVEHLMKPILERTWGVILFQEQMLETAMVLA 713

Query: 704  GYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            G+S ++A+ LRRA G  +    + K  E+   G    G S+ +   + E    FA YGF 
Sbjct: 714  GFSGAQAEELRRAFGFNRNTARLRKVVEQLQLGMRARGHSEAVVQKVLESSTTFAGYGFP 773

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            +SHA ++A+++Y + W+K H P EF A+ +  +           QDAR+  +++    V 
Sbjct: 774  ESHAISFALLAYASTWLKVHRPAEFTASLLNNQPMGFYSPATLIQDARRHGLKVKAGCVQ 833

Query: 823  TPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                +  V  +      L  +KG+     R ++   A + F S++D+ +R       RR 
Sbjct: 834  RSSWECTVEADDTIRIGLRYVKGLREANVRAMLAQRAARAFTSIDDWLARTSFSAAERRA 893

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN---RTNKHENIFAHEKGTFSDK- 937
            L ++   GAL      R   L  ++     A W  +    +    E+         S   
Sbjct: 894  LAAV---GALRTLASHRRAALWQVE-----AAWSAEETLLQQAGQESSGTGVSPVESTPG 945

Query: 938  --------------------------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
                                       T    +    + R   + R +      HP+ + 
Sbjct: 946  DTTKEDRQIITKRMPESTDMGGTLMPRTATPLAPMTPAERMHADFRGMNLTVGTHPMALV 1005

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +  L    +    +      G  +++A  V+ +Q+  T KG    +V+  +         
Sbjct: 1006 RERLP--DVWRAADLPLGRDGERVKVAGSVICRQRPGTAKG--FVFVSLEDETGIANVVV 1061

Query: 1032 FP 1033
            +P
Sbjct: 1062 YP 1063


>gi|16332330|ref|NP_443058.1| DNA polymerase III subunit alpha [Synechocystis sp. PCC 6803]
 gi|1653960|dbj|BAA18870.1| DNA polymerase III alpha subunit [Synechocystis sp. PCC 6803]
          Length = 897

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/811 (36%), Positives = 461/811 (56%), Gaps = 62/811 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+      PAIA+TD   ++ A+E  +      I+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAVELLKVCRGKPIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD----QG 125
           IIG ++ +   D        +         V+L    +GY+ L++L +   L        
Sbjct: 62  IIGNEMYVINGDIEINKRHRR------FHQVVLAKNNQGYRNLVKLTTISNLKGIQGSGI 115

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L++   EGLI+ +    G + +A        A +    +K LFGD  Y+ 
Sbjct: 116 FARPCINKELLEQY-KEGLIVTSACLGGEVPQAILKGDLDHARQVAKWYKNLFGDDYYLE 174

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR     +V++A   ++ +VATN+S F+S  D EAHD L+ +    +++++ 
Sbjct: 175 IQDHGSVEDRLVNINLVKIAQELDIKIVATNDSHFISCNDVEAHDALLCIQTGKLITEEK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           R R +   YLK+  EM  +F D      +  A+ NT+E+A +      +  P +P +   
Sbjct: 235 RLRYSGTEYLKSAEEMHLLFRDHLPDDIIETAIANTLEVADKVEAYSILGEPRIPHYPIP 294

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                    E  + + A  GL  RL      +      Y++RL++EL ++ +M F  YFL
Sbjct: 295 PN----HTPETYVEDIAWDGLLERLK--CRERADITPVYKERLEYELRMLEKMGFCTYFL 348

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           +V D+I++A+ + IPVGPGRGS AGS+ AY + IT+IDP+   L+FERFLNP+R SMPD 
Sbjct: 349 VVWDYIKYARDHGIPVGPGRGSAAGSLVAYCMKITNIDPVHHGLIFERFLNPERKSMPDV 408

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D DFC DRRDE+I YV  KYG ++VAQIITF  + +KA L+DV R L +PY++ D++ K+
Sbjct: 409 DTDFCIDRRDEMIEYVTQKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYAESDKMAKM 468

Query: 479 IPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           IP     P  L+ +      + +F+     +P V + ++++ ++EG  +    HAAG+VI
Sbjct: 469 IPVSRGKPAKLKVMISDQTPEPQFKARYDNEPWVKKWIDMAIRIEGTNKTFGVHAAGVVI 528

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
              PL Q+VP+ ++      +TQ+ M+ +E  GL+K DFLGLK LT LQ++++ +A+ +G
Sbjct: 529 SSEPLDQIVPLQKN-NDGAVITQYYMEDVEAMGLLKMDFLGLKNLTTLQRAVELVAETKG 587

Query: 594 VKVDLSLIPF------------------DD-HETYHLLTTKGTLGIFQLESSGMRQALEG 634
           +++DL  +P                   DD  +T+ LL      GIFQLES GM+Q +  
Sbjct: 588 IELDLDDLPLQERKALQIRARTGSKKLPDDVKKTHKLLEAGDLEGIFQLESQGMKQIVRD 647

Query: 635 MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           ++P  IEDI ++++LYRPGP+D   I ++ NRK+G+E+I   H L++P+L ET GV++YQ
Sbjct: 648 LKPSGIEDISSILALYRPGPLDAGLIPIFINRKHGREEISYQHKLLEPILNETYGVLVYQ 707

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQ+M++AQ L+ YSL EAD+LRRAMGKK  EEM K + +F+ G++K+G+   IA N+F+ 
Sbjct: 708 EQIMKMAQDLADYSLGEADLLRRAMGKKKAEEMQKHRAKFVDGSTKHGVPSRIAENLFDQ 767

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           + KFA+Y            +S+ T  +   Y
Sbjct: 768 MVKFAEYC-----------LSFGTEILTVEY 787


>gi|260767892|ref|ZP_05876826.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
 gi|260615922|gb|EEX41107.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
          Length = 1023

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/1038 (25%), Positives = 447/1038 (43%), Gaps = 88/1038 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA--GIQ 68
            +  L   S++S L GA     ++ +    +  AIAITD  +L   +           GI+
Sbjct: 3    YAELFCQSNFSFLTGASHPEELVIQADFLRYHAIAITDECSLAGVVRAHTTIKQQQLGIK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G    ++ +                   VLL    + Y  L  +++      +  Q 
Sbjct: 63   QIVGSLFQLNDECRF----------------VLLCPNQDAYAELCRIITNARRRSEKGQY 106

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                  W        L++            +  + ++  +       +    RL++ +QR
Sbjct: 107  K--LSEWDVMSARHCLVI------------WLPSHTERDKHWGQWLTQHHPHRLWLGVQR 152

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRP 246
            H G  D         LA   +LP+ A    L  +        +L A+     V   +   
Sbjct: 153  HLGPQDNAYLDHCRTLAQAFDLPITACGGVLMHNATRLPLQHILTAIQRGQPVEHIQAHL 212

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +  L++++++  +F   PE L+ +V IA RC F L       P  +  +       
Sbjct: 213  VSNTERALRSQAKLSKLFP--PEWLQESVRIAERCEFQLGSLHYRYPSELVPD----DHT 266

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     G  +R   G  A      D    ++ EL +I  +    YFL + D + +
Sbjct: 267  PMAYLRQLVEQGKALRFPHGVPA------DINATIEKELTLIDELDLPYYFLTIHDIVMF 320

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK++ I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +R
Sbjct: 321  AKRSGILY-QGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERQEPPDIDVDFEHER 379

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  +Q+D   K + N     
Sbjct: 380  REEVIQYLYRKYGRERAALAATVISYRFKSAVRDVGKALGIHEAQLDFFIKNV-NRRDRG 438

Query: 487  VSLQAIADDSRFREARLADPSVD--RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            +  QA     +  E  L   S+   + +E+  +L G  RH S H  G VI   PL +LVP
Sbjct: 439  LGWQA-----QLTELGLEPQSLKGQQFIELVNELIGFPRHLSQHVGGFVISSGPLYELVP 493

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDLSLI 601
            +      +  + Q++   +E  GL K D L L  LT ++K    + Q   +   +     
Sbjct: 494  VENAAMPERTIIQWDKDDLESLGLFKVDVLALGMLTAIRKCFTCIEQHHQRKLSIADITR 553

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
              DD   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI  D + 
Sbjct: 554  LQDDANVYGMIQRADTIGVFQIESRAQMSMLPRLKPRCYYDLVIQIAIVRPGPIQGDMVH 613

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R++G E +      ++ +L+ T GV I+QEQV++IA + +G+S  EAD LRRAM  
Sbjct: 614  PFLKRRDGIEDVTYPSKEVEAVLQRTMGVPIFQEQVIKIAMVAAGFSGGEADQLRRAMAS 673

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K   E+ K + + I+G    G     A  I++ +  F +YGF +SH+A++AV++Y +AW
Sbjct: 674  WKKTGELAKFRTKLINGMLARGYELAFAERIYDQICGFGEYGFPESHSASFAVLAYCSAW 733

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----R 834
            +K +YP  F  A +           +  QDA++  I+++P  VN    D +V ++     
Sbjct: 734  LKYYYPEAFYTALLNSLPMGFYSASQLVQDAQRHGIKVLPVCVNASQWDHQVVEHEQQQA 793

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +   L  +KG     AR ++ A   + F       +++    L ++ +ESL  A AL  F
Sbjct: 794  MRLGLRQVKGFSEQGARLLLNARPAQGFH----HPAQLKRCGLTQKDMESLASANALHSF 849

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
             ++R     S+               +   ++   E+   +     ++ S  ++      
Sbjct: 850  AHNRYATRWSM--------------MDSLSDLPLFEQLDEAAPALYQQPSDMDT---LIE 892

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +   LG   + HP+ +              +       + + +A +V  +Q   T  G  
Sbjct: 893  DYASLGLSLTQHPVTLLDTAGELGRFSRMRDLAQLPHKSLVTVAGIVTGRQSPGTAAG-- 950

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + + T  +         +
Sbjct: 951  VTFFTLEDDTGNINVVVW 968


>gi|255263692|ref|ZP_05343034.1| error-prone DNA polymerase [Thalassiobium sp. R2A62]
 gi|255106027|gb|EET48701.1| error-prone DNA polymerase [Thalassiobium sp. R2A62]
          Length = 1100

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/1048 (24%), Positives = 452/1048 (43%), Gaps = 83/1048 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +V L + S +S L GA    ++  +  A     + I D N L   +    +A  A I+P
Sbjct: 26   DYVELGLASCFSFLRGASDAVDLASEAWALGYDQLGIADWNTLAGVVRLHTEATKAHIRP 85

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-----Q 124
            +IG                 +    T  + +   +  + Y RL  L+S+    D     Q
Sbjct: 86   LIGA----------------RIVLVTGEAFLAYPNDRDAYGRLSTLISKGRRYDPDGVWQ 129

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K +  I L+ L        +++    +  +    F       + RL T + +    LY 
Sbjct: 130  AKGACDITLADLAATSDNIQLIVIPPRNLDL----FARDLTRIQHRLPTCRHVAASYLY- 184

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                  G D  R +Q+  +A    L ++ATN+ L+ +       DV+  +   T V +  
Sbjct: 185  -----HGDDVARLTQIDSIARARGLDMLATNDVLYHAPHRRPLQDVMTCIREKTRVDRAG 239

Query: 245  RP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                   + +LK+ +EM  +FS  P A+     +A   +F L       P          
Sbjct: 240  YLLEPNAERHLKSPAEMQRLFSRWPHAIAAPRVVADAITFALTDLKYEYPSETLPPG--- 296

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                  ELR     G + R   G  AK       R+ ++ EL +I +M  + Y L + D 
Sbjct: 297  -TTASAELRRLTYLGADDRYPAGLPAK------VRKIIEKELALIDKMDIARYILTIDDI 349

Query: 364  IQWAKKNNIP--VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +++A+    P  +  GRGS A S   + L IT +DP    +LFERF++ +R   PD D+D
Sbjct: 350  VRFARHEATPPILCQGRGSAANSAVCFCLGITAVDPNEHDVLFERFISEERDEPPDIDVD 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EVI+++  KYG +R     T    + ++A+R+VG+ + +       L K +  
Sbjct: 410  FEHERREEVIQHIYAKYGRDRAGLCATVIHYRPRSAIREVGKVMGLSEDITGALAKTVWG 469

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +      D +R     L+DP + R + ++Q + G+ RH   H  G ++ +RPL++
Sbjct: 470  SWGSELD----EDRARETGVDLSDPRIRRTITVAQMMIGMPRHLGQHVGGFILTERPLTE 525

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600
             VP+      D    +++   I+  G+ K D L L  LT ++K  D + A  GV  DL++
Sbjct: 526  TVPIGNGAMPDRSFIEWDKDDIDALGIFKIDILALGMLTCIRKCFDLMRAHHGVDYDLAM 585

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            IP DD  TY +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 586  IPQDDPATYKMLRRGDSLGVFQVESRAQMNMLPRLRPRVFYDLVIQVAIVRPGPIQGDMV 645

Query: 659  VVYNNRKNGKEKIVSIHP-------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
              Y  R+N +E +    P        +  +L  T GV I+QEQ M+I+   + +S +EA+
Sbjct: 646  HPYLRRRNNEEAVEYPQPEPPHDPDELRNILNRTLGVPIFQEQAMKISIEAAEFSPAEAN 705

Query: 712  VLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LR+AM   + +  ++K +++ +   ++ G     A   F+ +  F +YGF +SHAA++A
Sbjct: 706  ELRKAMATFRSRGTIEKLQDKMVGRMTRRGYDPVFAQRCFDQIKGFGEYGFPESHAASFA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             + Y ++W+K HYP  F A  +  +        +  +D R+ + ++    VN    D  +
Sbjct: 766  KLVYVSSWIKCHYPDVFAAGLLNSQPMGFYAPAQIVRDLREHDCEVREIDVNYSNWDNTL 825

Query: 831  GD----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                    +      IKG+    A  IM    D P+ S  D  +R     +   ++  L 
Sbjct: 826  EPTADGFALRIGFRQIKGLRADAAHQIMAGR-DAPYTSAADLKTR---SAIGAPIIRRLA 881

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
             A AL   G  R Q L     ++                +F       +D  +TL +   
Sbjct: 882  AADALRSMGMDRRQALWDARALRDA----------PDLPLFQDHADEGADTPVTLPQMPT 931

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                V    + +        HP+   +  +++ G    +    +  G  +++A +V+ +Q
Sbjct: 932  CEQVV---ADYQTTRLSLKAHPIAFLRRSMQRQGFIATDVLKQSRNGKRVKMAGIVLIRQ 988

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  + KG  + ++T  +         +P
Sbjct: 989  RPGSAKG--VCFITLEDEVGVANLVVWP 1014


>gi|91788255|ref|YP_549207.1| DNA polymerase III subunit alpha [Polaromonas sp. JS666]
 gi|91697480|gb|ABE44309.1| DNA polymerase III, alpha subunit [Polaromonas sp. JS666]
          Length = 1068

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/1061 (25%), Positives = 446/1061 (42%), Gaps = 100/1061 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S   GA     + ++       A+AITD  ++   +   +     G+Q
Sbjct: 7    PDYAELHALSNFSFQRGASHAQELAERAFKLGYKALAITDECSVAGVVRAHEVTRELGLQ 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ--GK 126
             + G +  +                     +V+L   A G+  L E ++          K
Sbjct: 67   LLPGAEFLV--------------QAANAFRLVVLPHNAAGWGNLCEFITEARRAGDEVDK 112

Query: 127  QSVRI-----CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             S R+       S L +      I+L+               +Q           LFG  
Sbjct: 113  GSYRVVLGETDFSRLADCE----ILLSPLPDAI--------HTQALCAHAEWATGLFGPN 160

Query: 182  LYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ ++  +G D   R  Q+ ++A    + LVA  N L         HDV+ A+     V
Sbjct: 161  AWLAVELLQGLDDALRLQQLQEVAGHTGIRLVAAGNVLMHKRSRKPLHDVMTAIRLGRPV 220

Query: 241  SQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +     +   + +L+ R  +  I+      L  T+E+A RCSF L     +  R+  ++
Sbjct: 221  HECGFALQANAEAHLRPRMRLADIYP--AGLLRATLEVAARCSFNLDEIRNLY-RYPRED 277

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 +     LR     G   R  +G   K       R++L FEL +I  +++  +F+ 
Sbjct: 278  MVPPAETPARWLRRLTWQGAHTRYPRGIPRK------VRKQLGFELALIEELEYEMFFIT 331

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++A +  I +  GRGS A S   Y L +T ++P    LLFERF++ +R   PD D
Sbjct: 332  VHDIVRFANEQKI-LCQGRGSAANSAVCYCLGVTAVNPAESKLLFERFISRERREPPDID 390

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EVI+Y+  KYGH+R A   T    + ++A+RDVG+AL M    +++  K  
Sbjct: 391  VDFEHERREEVIQYIYGKYGHDRAAIAATVIRYRPRSAIRDVGKALAMAPGLIEQFAKEH 450

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPS--VDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                   V       + + R+A LA     V + L++S +L G  RH S H  G V+   
Sbjct: 451  FWFDGSEVL------EEKIRQAGLAGRVGPVLQWLDLSAQLIGFPRHLSQHVGGFVLTQG 504

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             L++LVP+      D  + Q++   +E  GL+K D L L  L+ +++ L  + Q      
Sbjct: 505  KLTRLVPVQPASMEDRRIIQWDKDDLEAMGLLKVDVLALGMLSAIRRCLAMVNQTRGSQL 564

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                   D  TY ++    T+G+FQ+ES      L  +QP    D++  V++ RPGPI  
Sbjct: 565  QMHQIAPDEVTYDMICEADTVGVFQIESRAQMSMLPRLQPRSYYDLVVEVAIVRPGPIQG 624

Query: 658  IVVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
             +V+   KN +      +I   +P ++P L+ T G+ I+QEQVMQIA + + ++  EAD 
Sbjct: 625  GMVHPYLKNREILRNGGEIKPEYPALNPALERTLGIPIFQEQVMQIAMIAADFTPGEADD 684

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRR+M   K K  +D+   R ++    NG S   +  IF  +  F DYGF +SHAA++A 
Sbjct: 685  LRRSMAAWKRKGGVDRFHGRLVNAMVNNGYSAEFSERIFSQILGFGDYGFPESHAASFAK 744

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            + Y + W+K H P  FLAA +  +        +  QDA +  +++    V     D  + 
Sbjct: 745  LVYVSCWLKCHEPACFLAAMVNSQPMGFYSPSQLVQDAVRHGVEVRAVDVMHSDWDCTLE 804

Query: 832  --------------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                                   +   L  + G+    A  ++EA A   F S ED  SR
Sbjct: 805  PAENKALPQHPGIYPGIKENQPAVRLGLRLVSGLREDAAIRLVEARAQAAFSSTEDLVSR 864

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
                 L    L +      L   G+ R Q+  +  +  K A  + K              
Sbjct: 865  ARLNTLEINALAAADALLPLS--GHRRQQVWDA--SAIKPAPGLLK------------SV 908

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
             T    + L       + +    + +  G     HP+ + +  L + G+    E  A   
Sbjct: 909  PTHETPLELPDTPEGENIL---FDYQATGLTLRRHPVALLRERLARKGLLSASELNALPD 965

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            G  +    +V  +QQ +T  G+   +VT  +         +
Sbjct: 966  GEEVAGCGIVTVRQQPQTANGT--IFVTLEDETGPVNVIVW 1004


>gi|319943592|ref|ZP_08017874.1| DNA-directed DNA polymerase III alpha subunit [Lautropia mirabilis
            ATCC 51599]
 gi|319743407|gb|EFV95812.1| DNA-directed DNA polymerase III alpha subunit [Lautropia mirabilis
            ATCC 51599]
          Length = 1122

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/1061 (25%), Positives = 449/1061 (42%), Gaps = 76/1061 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
             P++  L   S ++ L GA S   + ++  A    A+AITD  +L   +   + +   G+
Sbjct: 46   PPAYAELHCLSDFTFLRGASSAAQLFERARACGYQALAITDECSLAGIVRAFEASRNTGV 105

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG---YQRLIELVSRMYLLDQ 124
              I+G +  +       +  Q +  +  + S++     A G   Y+   E  SR  L   
Sbjct: 106  PLIVGSEFRLVDGTRFVLLVQDQAGYEALCSLITTGRRAAGKGCYRLTREDFSRSGLDLS 165

Query: 125  G--------KQSVRICLSWLQEIGTEGLIMLTG----GSSGPIDRAFFFNSSQVAEKRLL 172
            G             +      E   + L  L G    G              ++A +R  
Sbjct: 166  GLLCLWLPSPHPDEVQADAPDEQQADVLDGLDGLGARGMDDEAPAVPESGEDRLALERAA 225

Query: 173  TFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
              +++F    ++ ++ HR  D       ++ LA    L  VA  +     +      D L
Sbjct: 226  WVRRIFP-HAWLAVELHRDRDDAAVLRHLLALAQKTGLTPVACGDVHMDLKRRRALQDTL 284

Query: 232  MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
             A+ H   +++         + +L+ R  +  I+   P  L  T+EIA+RC+F L     
Sbjct: 285  TALRHRRPLTEAGGWLFRNGERHLRRREALAGIYP--PALLAETLEIAKRCTFRLDSLQY 342

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
              P+ +  E         + LR+ A  GL  R  QGA  +          ++ EL +IA 
Sbjct: 343  RYPQELVPEG----HTPTSWLRHLAEQGLRWRWPQGAPERVVGL------VEHELALIAD 392

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            + +  YFL V D +++A+   I +  GRGS A S   + L I ++DP R  +L ERF++ 
Sbjct: 393  LGYEPYFLTVHDIVRFARSQGI-LCQGRGSAANSAVCFVLGIVEVDPSRMQVLVERFISR 451

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R   PD D+DF  +RR+EV +Y+  KYG  R A        + ++A RDV RAL  P  
Sbjct: 452  ERNEPPDIDVDFEHERREEVFQYIYGKYGRARAALTANVICYRGRSAARDVARALGFPPD 511

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            QV  +                +A+         A P + RLL + + L    RH S H  
Sbjct: 512  QVTAIGACFGRGGYGDDVTDRLAE----AGFDPATPLMQRLLHLVEALRDHPRHLSQHVG 567

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G VI D PLS+LVP+         + Q+N   ++  G++K D L L  LT ++K+L  LA
Sbjct: 568  GFVISDGPLSRLVPIENAAMPARTIIQWNKDDLDVLGMLKVDCLALGMLTCVRKTLALLA 627

Query: 591  -QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
              RG  +  + IP DD  TY +++   T+G+FQ+ES      L  ++P C  D++  V++
Sbjct: 628  RHRGRHLTPATIPPDDDATYDMISAADTVGVFQIESRAQMSMLPRLRPRCFYDLVIQVAI 687

Query: 650  YRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             RPGPI  D +  Y  R+ G E +      +  + + T GV ++QEQ M++A + +GY+ 
Sbjct: 688  VRPGPIQGDMVHPYLRRRQGLEPVNYPSEALREVFERTLGVPLFQEQAMKLAIVAAGYTP 747

Query: 708  SEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             EAD LRR+M   +   +++  ++R + G  + G S   A  IFE L  FA+YGF +SHA
Sbjct: 748  GEADHLRRSMAAWRRHGDLEIHRQRLVGGMQERGYSLAFAERIFEQLKGFANYGFPESHA 807

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
             A+A+I+Y + W+K H P  F+ A +  +           QDAR+  + + P  V     
Sbjct: 808  CAFALITYVSCWLKRHEPAAFVCALLNSQPMGFYSASSLLQDARRHGVTVRPVDVFHSHW 867

Query: 827  DFKVGDNRI-------YYSLAAIKGVGTTTARHIM--------EASADKPFDSLEDFCSR 871
            D  +   +              + G+    AR I+           +   F  + D C R
Sbjct: 868  DNTLEGGKPGGAQPALRLGFRQVHGLSEAAARRIVAARLALGGAEPSRHAFRDVADLCHR 927

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
                     +L     AGAL      R     ++  +             +   +FA  +
Sbjct: 928  AGLDAREASLL---AEAGALRALATHRHAAHWAVAGV------------EEPTPLFA--Q 970

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                  + L   SV   +     + R  G   + HPL + +  L++              
Sbjct: 971  SPQEQTVDLPHPSV---AQELLADYRSQGLSLTTHPLALLRSQLQERRCLESRALQDLPH 1027

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            G  +R A +V+ +Q+  T  G  + +VT  +         +
Sbjct: 1028 GRGVRAAGLVIMRQRPPTASG--VTFVTLEDEWGTVNVVVW 1066


>gi|284031892|ref|YP_003381823.1| DNA polymerase III subunit alpha [Kribbella flavida DSM 17836]
 gi|283811185|gb|ADB33024.1| DNA polymerase III, alpha subunit [Kribbella flavida DSM 17836]
          Length = 1145

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/1077 (26%), Positives = 463/1077 (42%), Gaps = 104/1077 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L VHS++S L+GA S   ++++       AIA+TD +  + A  F++ A A  +  
Sbjct: 65   PYAELHVHSNFSFLDGASSPEQLVEEAVRHGLHAIALTDHDGFYGAARFAETADAYAMPT 124

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + G +L + +        Q     P    +++L    EGY RL   ++  +L    K   
Sbjct: 125  VYGAELSLGLPG-----PQNGVADPDGSHLLVLAEGKEGYHRLAGAMTEAHLAGGEKGRP 179

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRA-----FFFNSSQVAEKRLLTFKKLF-GDRLY 183
               L  L   G +  ++LTG   G + +A          +  A + L     LF  DR+ 
Sbjct: 180  VYDLEELAARGRDHWLILTGCRKGAVRQALTTASSPAAGAAAARRELDRLTALFGRDRVV 239

Query: 184  VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            V L  HR          +  LA    LP VAT N  +    D+     L AV     + +
Sbjct: 240  VELIDHRMPLSSTHNQALADLAAAAGLPTVATGNVHYAQPRDHRLASALAAVRARRSLDE 299

Query: 243  KD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             D      P  +L + +EM   F + P A+  +VE+A + +F L+   P LP+       
Sbjct: 300  MDGWLPAGPAAFLHSGAEMAMKFRNFPGAVARSVELADQLAFRLRAAQPRLPKIDVPAG- 358

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 +   LR     G   R       +      Y QRL+ EL+VI +  F GYFLIV 
Sbjct: 359  ---LTQMGWLRQLVFEGAAERYG----TRDQRPDAY-QRLERELDVIEQRDFPGYFLIVW 410

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +++A+++ I +  GRGS A S   Y L +T +D + + L FERFL   R   PD D+D
Sbjct: 411  DMVRYAREHGI-LCQGRGSAANSAVVYCLGVTAVDSILYGLPFERFLAATRSEEPDIDVD 469

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  DRR+EVI+Y+  KYG    AQ+    S + K A+RD+ +AL     Q D   K +  
Sbjct: 470  FDSDRREEVIQYMYGKYGRRNAAQVANVISYRPKMAVRDMAKALGYSTGQQDAWSKQVDG 529

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
              A   S     D                ++E++ +L    RH   H+ G+V+ ++P+ +
Sbjct: 530  WSADLSSTDH--DIPPL------------VVEMATELLKAPRHLGIHSGGMVLTEQPVGE 575

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSL 600
            +VP+         V Q++       GL+KFD LGL  L  +Q  +D +A R G +  L  
Sbjct: 576  VVPIEHARMEKRTVLQWDKDDCAYMGLVKFDMLGLGMLAAIQYCIDLVADRLGERWQLHT 635

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI-- 658
            IP ++   Y  L    ++G+FQ+ES      L  ++P    D+   ++L RPGPI     
Sbjct: 636  IPKEEQGVYDQLCRADSVGVFQVESRAQMATLPRLRPRRFYDLACEIALIRPGPIQGGAV 695

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM- 717
              +  R  G+E I   HPL++P+L+ T+GV ++QEQ+MQ+A  + G    EAD+LRRAM 
Sbjct: 696  HPFVRRMTGQEPITYPHPLLEPVLERTKGVPLFQEQLMQMAMAIGGIDGDEADLLRRAMG 755

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K+  E++   K +  +G + NG++  +A +I+  +  FA++GF +SH+ ++A++ Y + 
Sbjct: 756  SKRGIEKISSLKTKLYAGMATNGLTGDVADDIYARIEAFANFGFAESHSISFALLVYAST 815

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV----------- 826
            W + HYP  FLAA +  +       +    DAR+  +++  P +    V           
Sbjct: 816  WFRLHYPAAFLAALLRAQPMGFYSPQSLVADARRHGVEVRRPDLQRSGVHALLEDLDDRR 875

Query: 827  -------------------------------DFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                                             + G   +   LAA+K +GTT A  I+E
Sbjct: 876  PARPTGMDSCLATVQPPIGPFDPDAPDTCADHRRDGAFAVRLGLAAVKSIGTTMAETIVE 935

Query: 856  ASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
                  P+  L D   R          LE+L  AGA DCFG  R Q L         A  
Sbjct: 936  QRELHGPYADLADLARRTGLTA---SQLEALATAGAFDCFGIDRRQALWQ-------AGR 985

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
              + R ++   I             L     +  +V    +    G     HP++  +  
Sbjct: 986  AAEERPDRFAGI-----TAAGPPPMLPGMGEDEVTV---ADLWATGITTGKHPVEHVRAQ 1037

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            L   GI              +  A +V  +Q+  T  G  + ++   +         
Sbjct: 1038 LDAAGILSATALRTARPDTRVTAAGVVTHRQRPATASG--VTFLNLEDETGMINVIV 1092


>gi|188584280|ref|YP_001927725.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001]
 gi|179347778|gb|ACB83190.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001]
          Length = 1070

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/1037 (26%), Positives = 444/1037 (42%), Gaps = 78/1037 (7%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             LQV + +S L GA S   +    +    PA+ ITD  +L   +   Q A   G++ ++G
Sbjct: 5    ELQVTTHFSFLRGASSPEELFSAASLLGIPALGITDHGSLAGMVRAHQAAKVTGVRLVVG 64

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            C                +        +++  +    Y RL  L+S       GK   R+ 
Sbjct: 65   C----------------RLDLDDFLPLLVYPTDRAAYGRLCRLLSLGKARG-GKGRCRLT 107

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RG 191
             + L E   EGL  +       +               L+  +K FG R    L R  R 
Sbjct: 108  WADL-EAWQEGLFAVL------LPEGREAALPSDLASHLVQLRKTFGVRASCALTRRFRP 160

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250
             D  R   +   A    +  VAT + L+         DV+  +     + +    +    
Sbjct: 161  DDADRLDALAAAARAARVATVATGDILYHVAGRRRLQDVVTCIRLGLTIDRAGFAKERHA 220

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            D +LK   E   +F+  PEAL    EIA  C+F L   A   P     E  +     +  
Sbjct: 221  DRFLKPPDETARLFARFPEALARAGEIAAACTFSLDDLAYTYPT----EAREDGLSPQER 276

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L     AG E R   G        +   ++L  EL++I R+ ++ YFL V   + +A + 
Sbjct: 277  LEALTWAGAERRYPAGV------PEAVTRQLRHELDLIGRLAYAPYFLTVESIVAFADRK 330

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I +  GRGS A S   + L IT IDP+R +LLFERF++  R   PD D+DF  +RR+EV
Sbjct: 331  KI-LCQGRGSAANSAVCFCLRITSIDPIRQNLLFERFVSEARREPPDIDVDFEHERREEV 389

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+++   YG  R A        +++ ALR+VG+ + +P      L +L  +  +  V   
Sbjct: 390  IQWIFETYGRHRSALTAIVSRFRSRGALREVGKVMGLPEDVTGALNRLTWSWSSEGVG-- 447

Query: 491  AIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                +   RE  L   D  +   LEI+++L G  RH S H  G V+    L +LVP+   
Sbjct: 448  ----ERELRELNLNPDDRRLRLTLEIARELIGTPRHLSQHPGGFVLTLDRLDELVPVEPA 503

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
              +   V +++   I+    +K D LGL  L  L+++ D LA+ +    DL+ IP +D  
Sbjct: 504  AMAHRQVIEWDKDDIDALKFMKVDVLGLGMLGCLRRAFDLLAEVKNQPRDLASIPQEDGA 563

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRK 665
            TY ++    TLG+FQ+ES      L  M+P    D++  V++ RPGPI  D +  Y  R+
Sbjct: 564  TYAMIRRADTLGVFQIESRAQMAMLPRMKPRTFYDLVIEVAIVRPGPIQGDMVHPYIRRR 623

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEE 724
              +E++    P +  +L++T GV ++QEQ MQ+A + +G+S  EAD LRR+M   K    
Sbjct: 624  EKREEVTYPTPELKAVLEKTLGVPLFQEQAMQVAMVGAGFSAMEADELRRSMATFKFTGG 683

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + + + R + G   NG ++  A   F+ L  F  YGF +SHAA++A+++Y ++WMK H+P
Sbjct: 684  VHRFQTRLVEGMIANGYARDFAERTFKQLEGFGSYGFPESHAASFALLAYASSWMKCHHP 743

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-------NRIYY 837
              F AA +  +        +  +DAR   + I P  VN    D  +           +  
Sbjct: 744  DVFCAALLNAQPMGFYAPAQIVRDARAHGVVIRPLDVNYSEWDCTLESLGEGRELFAVRL 803

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L    G+     RH+ +    +PF SL +   R          L  LV A A    G +
Sbjct: 804  GLRLASGLPERDGRHLAKMRGGRPFASLPELADRAGLPAT---ALTCLVRADAFRSLGLN 860

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVENSSVRFEN 954
            R +           A W  K        +FA            ++L   S     V    
Sbjct: 861  RRE-----------AAWAAKALRPDPLPLFATLSEPAQAAEPAVSLPAMSAGGEVV---A 906

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +    G     HPL   +  L ++G +          G +I +A +V+ +Q+  + KG+ 
Sbjct: 907  DYCAKGLSLRAHPLAFLRGTLGRLGARPCAALDRVANGASIVVAGIVLMRQRPGSAKGTM 966

Query: 1015 IGWVTFSEPAKEYEANF 1031
              ++T  +         
Sbjct: 967  --FMTLEDETGIANLIV 981


>gi|254365986|ref|ZP_04982031.1| DNA polymerase III (alpha chain) dnaE2 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis str. Haarlem]
 gi|134151499|gb|EBA43544.1| DNA polymerase III (alpha chain) dnaE2 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis str. Haarlem]
          Length = 1090

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/1045 (26%), Positives = 481/1045 (46%), Gaps = 73/1045 (6%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + +  S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A
Sbjct: 50   ERVGSSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAA 109

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE-LVSRMYL 121
                ++ + G       + +L  T + + P P  P +++L    EGY+RL   L +R++ 
Sbjct: 110  AELDVRTVFGA------ELSLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAARIWP 163

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                  + R+    L+         L      P  R    ++      R        G  
Sbjct: 164  A-----AKRVSALRLRRANRGRRRALAHPDWLP-QRPCAPSAFPGWPGRGAAGAGRSGGP 217

Query: 182  LYVNLQRHRGYDRY------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            ++    +HR    +       + +  + A    + +VAT  + F           + A+ 
Sbjct: 218  VHPQPGQHRADPSWSPARRRTQRRAGRTAPRFGVGIVATTGAHFADPSRGRLAMAMAAIR 277

Query: 236  HS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
               ++ S           +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP 
Sbjct: 278  ARRSLDSAAGWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPP 337

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            F   +       E++ LR+  +AG   R      A   ++     +++ EL VIA+++F 
Sbjct: 338  FDVPDG----HTEDSWLRSLVMAGARERYGPPKSAPRAYS-----QIEHELKVIAQLRFP 388

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFL+V D  ++ + N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P R  
Sbjct: 389  GYFLVVHDITRFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDG 447

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD DID   D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D 
Sbjct: 448  PPDIDIDIESDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDA 507

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              K + +                  +A   D   +++++++ ++  L RH   H+ G+VI
Sbjct: 508  WSKQVSHWTG---------------QADDVDGIPEQVIDLATQIRNLPRHLGIHSGGMVI 552

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
             DRP++ + P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+   
Sbjct: 553  CDRPIADVCPVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKG 612

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            ++VDL+ +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPG
Sbjct: 613  IEVDLARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPG 672

Query: 654  PIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PI       Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD
Sbjct: 673  PIQGGSVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEAD 732

Query: 712  VLRRAM-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             LRRAM  K+  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++
Sbjct: 733  QLRRAMGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSF 792

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A + + +AW K H+P  F AA +  +       +    DAR+  + +  P VN       
Sbjct: 793  ASLVFYSAWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHAT 852

Query: 830  VGDNRI--YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
              +        L A++ +G   A  ++    A+ PF SL D  SRV     +   +E+L 
Sbjct: 853  CENAGTEVRLGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRVQL---SVPQVEALA 909

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGAL CFG SR           +         T + + +      +      +      
Sbjct: 910  TAGALGCFGMSRR----------EALWAAGAAATGRPDRLPGVGSSSH-----IPALPGM 954

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +       +    G     +P    +  L  MG+   E   +   G+ + +A  V  +Q+
Sbjct: 955  SELELAAADVWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQR 1014

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANF 1031
              T +G  + ++   +         
Sbjct: 1015 PATAQG--VTFINLEDETGMVNVLC 1037


>gi|154508747|ref|ZP_02044389.1| hypothetical protein ACTODO_01255 [Actinomyces odontolyticus ATCC
            17982]
 gi|153798381|gb|EDN80801.1| hypothetical protein ACTODO_01255 [Actinomyces odontolyticus ATCC
            17982]
          Length = 1094

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/1093 (26%), Positives = 478/1093 (43%), Gaps = 118/1093 (10%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     +  L  HS+++ L+G      ++++ A     A+AI D + ++S ++ +  A  
Sbjct: 1    MTTERRYAELHAHSAFTFLDGTDEPARMVEEAARLGLDALAILDVDGMYSTVQTTMAART 60

Query: 65   AGIQPIIGCQLDIDMQ------DNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQRLIELV 116
            AG+  + G +L +                 G  P    P   + ++ ++  GY  L+  +
Sbjct: 61   AGLPIVYGAELTLAPDALRGIVPGSSAPGWGLAPGAEDPGMRLPIVAASPTGYAHLVGAM 120

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S   L + G+++ R  L  L E G E L++LTGG  GP+ RA     +  A + L     
Sbjct: 121  SARALSEPGQRNPRHDLVNLSEAGGE-LVVLTGGRRGPLMRALRAGGTAPARRVLDGLVD 179

Query: 177  LFG-DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             FG D++ V  Q  RG +      + +LA      LVAT+ +   S       D+L A  
Sbjct: 180  AFGCDQVLVEWQAARGDEDEVGDVLAELARASGTRLVATSGARMSSPSKQALGDILTATR 239

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
              + +++ +        +L++ +EM  +    P+AL+N  E+A  C+F L++ AP LPR 
Sbjct: 240  LGSSLNEAEAHLGAHRSFLRSPAEMARLHGAHPQALDNACEVAAACAFDLRLVAPRLPRT 299

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
               +        ++ L +    G  VR          H     + ++ EL VI R+ F+G
Sbjct: 300  QVPDG----HTPDSWLAHCTYEGASVRYGS-----RAHHPRAWETIEHELGVIERLGFAG 350

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV D + +  +N I +  GRGS A S   Y L IT +D +R +LLFERFL+  R   
Sbjct: 351  YFLIVKDIVDFCARNGI-LCQGRGSAANSAVCYCLGITAVDAVRHNLLFERFLSDARSGP 409

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+D    RR+EVI+YV + +G +R AQ+    + + ++A+RDV RAL  P       
Sbjct: 410  PDIDVDIEACRREEVIQYVYDTFGRDRAAQVANVITYRPRSAIRDVARALGYPAGTATAW 469

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                          Q   +                + + +Q L  L RH   H+ G+V+ 
Sbjct: 470  S-------------QGRGEVPPL------------VGDAAQALARLPRHMGIHSGGMVLT 504

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA----- 590
            D+P+S++ P+         V Q++ +    AGL+KFD L L  LT L+ + D L      
Sbjct: 505  DQPVSRICPVGWAAMPGRTVLQWDKEDCADAGLVKFDLLSLGMLTALRVAFDELRAGGAR 564

Query: 591  ------------------QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
                              + G  + L  +P +D   Y LL    T+G+FQ+ES      L
Sbjct: 565  AGEASNQLRGWAPRVVEGREGQPLGLHTLPEEDPRVYDLLCAADTVGVFQVESRAQMNTL 624

Query: 633  EGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
              ++P C  DI+  V+L RPGPI   ++  Y  R++G+EK+  +H L++P L++T GV +
Sbjct: 625  PRLKPRCFYDIVVEVALIRPGPIQGRSVNPYLRRRSGREKVTYLHQLLEPALRQTLGVPL 684

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +QEQ+M+IA+  +G S + AD LRRAM  K+  E M+  K   ++G  + GI       I
Sbjct: 685  FQEQLMRIARDAAGLSGARADQLRRAMGAKRSPERMEALKGDLMAGMEERGIDAPTRERI 744

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            FE L  FAD+GF +SH+ ++A I Y ++W+K H P  F AA +  +           QDA
Sbjct: 745  FEQLKGFADFGFPESHSFSFAHIVYASSWLKVHAPEHFYAAILASQPMGFYSPATLVQDA 804

Query: 810  RQFNIQIMPPSVNTPCVDFKVGD-------------------------------NRIYYS 838
            R+  ++++ PSVN   VD  V                                   +   
Sbjct: 805  RRHGVRVVGPSVNDSLVDASVQRVGDDEAGESYNPGRPEALPSRGTVALDVDRELAVRIG 864

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L+ ++G+G   A  I+EA     F S  D   R          +E L  AGAL+C G  R
Sbjct: 865  LSQVRGLG-AVAERIVEARRQGAFTSQADLARRAHVSA---SAMEKLAMAGALECLGVGR 920

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
                   +         +          F       +    L   S    + R  ++   
Sbjct: 921  R------EGAWAAGALAQPQARAGQWQPFLPGTEVGARVPELPSLSE---AERMRSDVAS 971

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             G     HP    +  L    +    E    + G  + +A +V  +Q+  T  G  I ++
Sbjct: 972  TGLTPGRHPFSYVRGSLPA-SVLRAGELGQHLTGRIVDIAGVVTHRQRPHT--GGGITFL 1028

Query: 1019 TFSEPAKEYEANF 1031
            +  +       + 
Sbjct: 1029 SLEDETGLVNVSV 1041


>gi|326387892|ref|ZP_08209498.1| DNA polymerase III subunit alpha [Novosphingobium nitrogenifigens DSM
            19370]
 gi|326207938|gb|EGD58749.1| DNA polymerase III subunit alpha [Novosphingobium nitrogenifigens DSM
            19370]
          Length = 1122

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/1063 (24%), Positives = 438/1063 (41%), Gaps = 85/1063 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L + S +S L GA    ++          AI I D N++   +    +A A  ++P+
Sbjct: 27   FVELGLMSCFSFLRGASDAVDLALTARRLGYDAIGIADANSMAGVVRLHGEARALHLRPV 86

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-----QG 125
            IGC                +       S +        Y RL  L+S   +       Q 
Sbjct: 87   IGC----------------RIETVEGLSFLAYPRDRAAYGRLCRLISLGRMETPDGEWQD 130

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR--AFFFNSSQVAEKRLLTFKKL---FGD 180
            K   +I L  L + G    ++L                N   + E R  +   L   F D
Sbjct: 131  KGRCQITLPMLSDQGEGIALVLVPPRELDTQLTIPVASNVVALGESRAPSLMPLSASFPD 190

Query: 181  ------------RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
                        R       HRG D  R + +  L   + L L+ATN+ L+        H
Sbjct: 191  LVPRLVHILPGMRHIAACYLHRGDDVARINALDALTRANGLELLATNDVLYHEAARRPLH 250

Query: 229  DVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            DV+ A+ H T V+          + +LK+  EM  +F   P A+     +A  C+F L  
Sbjct: 251  DVMTAIRHRTTVAAAGHLLEAHGERHLKSPQEMQRLFDRWPHAISAARTLADACTFSLDD 310

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                 P  I  E  D Q    + L  +  +G   R  +G        +     L  EL +
Sbjct: 311  LRYEYPEEICPEGCDPQ----DWLEERTWSGAAWRYPEGV------PESVAATLRRELAL 360

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPV-GPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            I +++ + YFL + D + +A+    P+   GRGS A S   Y L IT +DP + +LLF+R
Sbjct: 361  IGKLQLATYFLTIKDIVDFARGQEPPILCQGRGSAANSAVCYCLGITAVDPAKHALLFDR 420

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            F++ +R   PD D+DF  +RR+EVI+Y+  +YG  R     T    + + A+R+VGRA+ 
Sbjct: 421  FISEERKEPPDIDVDFEHERREEVIQYIYRRYGRRRAGLCATVIHYRPRMAIREVGRAMG 480

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
            +       L + +       ++ + +A         L DP + R+L +++++ G+ RH S
Sbjct: 481  LTDDVTGALARTVWGSWGSGLAERNVAQ----AGFDLGDPHLRRVLRLAEQMIGMPRHLS 536

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             H  G ++   PL + VP+      +    +++   I+  G++K D L L  LT ++K L
Sbjct: 537  QHVGGFILTQGPLVETVPIGNGAMPERSFIEWDKDDIDALGILKVDVLALGMLTCIRKCL 596

Query: 587  DFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            D L A  G  + L+ IP +D   Y +L    +LG+FQ+ES      L  ++P    D++ 
Sbjct: 597  DLLEAHHGRPLTLATIPREDQAVYDMLCRGDSLGVFQVESRAQMNMLPRLRPQEFYDLVV 656

Query: 646  LVSLYRPGPI--DNIVVYNNRKNGKEKIVSI-----H---PLIDPMLKETQGVIIYQEQV 695
             V++ RPGPI  D +  Y  R+ G E +        H     +  +LK T GV I+QEQ 
Sbjct: 657  QVAIVRPGPIQGDMVHPYLKRRRGVETVSIPAPDPRHGPPDELTSILKRTYGVPIFQEQA 716

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG-ASKNGISKTIAVNIFELLA 754
            M+IA   + +   EA+ LR+AM       M  + E  + G     G     A   F  + 
Sbjct: 717  MKIALDAAKFDSGEANRLRKAMATFRSRGMVHELEELMVGRMIARGYDPEFATRCFNQIK 776

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F +YGF +SHAA++A++ Y ++W+K HYP  F    +  +        +  +DAR   +
Sbjct: 777  GFGEYGFPESHAASFALLVYVSSWLKCHYPAVFACGLLNSQPMGFYAPAQIVRDARDHGV 836

Query: 815  QIMPPSVNTPCVDFKVGDN--RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871
             ++P  +N    D  +      +      + G+       ++ A   +  +  L D  +R
Sbjct: 837  TVLPVDINHSEWDCTLEQEGAALRLGFRQVDGLAEHRVAALIAARQHEGAYVDLADVKAR 896

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
                     ++E L  A A    G SR + L    ++                 +FA   
Sbjct: 897  ---SGQPPAIIERLAAADAFGSLGLSRREALWQARSLI----------AAPELPLFAAMG 943

Query: 932  GTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
                    ++    V   +     + +        HP+   +P L + G     +     
Sbjct: 944  ARGEGAEAVQARLPVMPLAEEVVADYQTQRLSLKAHPMAFLRPGLAERGFLRSCDLRNRK 1003

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + + +A +V+ +QQ  + KG  + ++T  +         +P
Sbjct: 1004 TRSMVHVAGLVLVRQQPGSAKG--VCFITLEDETGVINLVIWP 1044


>gi|330953443|gb|EGH53703.1| error-prone DNA polymerase [Pseudomonas syringae Cit 7]
          Length = 994

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/1006 (26%), Positives = 447/1006 (44%), Gaps = 84/1006 (8%)

Query: 44   IAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
            +AI D   L   +   Q + + G+  IIG ++ I+                  P  VLLV
Sbjct: 1    MAIPDECTLAGIVRSWQASISTGLPLIIGSEMHIENG----------------PKAVLLV 44

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
             +  GY+ L +L++        K   R+      E   +GL+         I        
Sbjct: 45   ESQTGYEALCKLITVARRR-ARKGEYRLLREDF-EPAPDGLLA--------IWLPDIEGD 94

Query: 164  SQVAEKRLLTFKKLFGDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
            +Q         ++ F +RL++ ++ HRG  D  R + ++ LA    +P VA+ +    + 
Sbjct: 95   AQACLAHGRWLRERFAERLWLGVELHRGADDEQRLADLLALAQLLGIPAVASGDVHMHAR 154

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
                  D + A+ H T V++         + +L+    +   + D    L  +V IARRC
Sbjct: 155  GRRALQDTMTAIRHHTTVAEAGHLLFANGERHLRPLDALAEHYPDW--LLAESVRIARRC 212

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            +F L+      P  +  +     +   + LR     G+  R  +G           R ++
Sbjct: 213  TFDLKQLKYEYPHELVPKG----QTPTSWLRELTERGVRKRWPKGLTPAT------RAQV 262

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + EL +IA  KF  YFL V D +++A+  +I +  GRGS A S   YAL IT+++P + +
Sbjct: 263  EKELALIAEKKFDSYFLTVHDIVEFARSQHI-LCQGRGSAANSAVCYALGITELNPEKSN 321

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERF++ +R   PD D+DF  DRR+EVI+Y+  +YG  R A      +     A+RDV
Sbjct: 322  LLFERFISRERNEPPDIDVDFEHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDV 381

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD--PSVDRLLEISQKLE 519
             + L +P  Q++ L +             ++    R RE       P + R+L ++ +L 
Sbjct: 382  AKVLGLPPDQINALAEAFSRWS------DSLPSPERLREYGFDADTPILKRVLALTGELI 435

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G  RH S H  G VI + PL  LVP+     +D  + Q++   ++  GL+K D L L  L
Sbjct: 436  GFPRHLSQHPGGFVISEHPLETLVPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGML 495

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            + L+++ D +   RG +  L+ +P DD +TY +++   T+G+FQ+ES      L  ++P+
Sbjct: 496  SALRRTFDLVHLHRGKRWTLASLPGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPE 555

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
               D++  V++ RPGPI  D +  Y  R+NG+E +    P ++ + K T GV ++QEQVM
Sbjct: 556  KFYDLVIEVAIVRPGPIQGDMVHPYLRRRNGEEAVTYP-PKLESVFKRTLGVPLFQEQVM 614

Query: 697  QIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            ++A L + Y+  EAD LRRAM   K    ++  +ER  +G  K G     A  IFE +  
Sbjct: 615  EVAILAADYTPGEADELRRAMAAWKRHGGLEPHRERLRTGMLKKGYEADFADRIFEQIKG 674

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            F  YGF +SHAA++A+++Y + W+K H P  F  A +           +  QDAR+ +I+
Sbjct: 675  FGSYGFPESHAASFALLTYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIE 734

Query: 816  IMPPSVNTPCVDFKVGD---------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            I P  V     D  +             I   L  ++G     A  I  A A +PF    
Sbjct: 735  IRPVDVRYSDWDCSLEPLDHPDRTRNLAIRLGLRMVRGFREEDALRIEVARAKRPFVDAT 794

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            D   R +    + R  E+L  +GAL      R +    +  +                 +
Sbjct: 795  DLTLRAEL---DSRAAEALADSGALRGLIGHRHRARWEVAGV------------EAQRPL 839

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            F       +  I      +   +     +   LG     HPL + +  L     +  ++ 
Sbjct: 840  FDDLPSEETQVI----LPLPTVAEDLVADYTTLGTTLGPHPLALLRRQLAAKRFRSSQDL 895

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +       + +A +V+ +Q+  T  G  + +VT  +         +
Sbjct: 896  LHLENDRTLSVAGLVIGRQRPGTASG--VTFVTLEDEFGMVNVVVW 939


>gi|187926662|ref|YP_001893007.1| DNA polymerase III, alpha subunit [Ralstonia pickettii 12J]
 gi|241666174|ref|YP_002984533.1| error-prone DNA polymerase [Ralstonia pickettii 12D]
 gi|254777926|sp|B2UJ29|DNAE2_RALPJ RecName: Full=Error-prone DNA polymerase
 gi|187728416|gb|ACD29580.1| DNA polymerase III, alpha subunit [Ralstonia pickettii 12J]
 gi|240868201|gb|ACS65861.1| DNA polymerase III, alpha subunit [Ralstonia pickettii 12D]
          Length = 1079

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/1060 (24%), Positives = 443/1060 (41%), Gaps = 80/1060 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA   + ++++       A+A+TD  ++         +    ++
Sbjct: 11   PDYAELHCISNFTFLTGASHPSELVERAKLYGYQALALTDECSVAGTARALVASKEHELK 70

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             II             + N    P+     +VLL    EGY  L E+++   L    K  
Sbjct: 71   LII--------GSRFTVRNADGEPW---LRLVLLAQNIEGYGNLSEIITHARLA-APKGE 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             R+    L     E   +        I    +    Q    +    +++FGDRL + L+ 
Sbjct: 119  YRLLADDLASPQGELAHLRGAPDCLAILLPDYDPDPQQLLAQAWWCQRVFGDRLSIALEL 178

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
              R  D      V+ ++   ++P+VAT      + +    HDVL A+  S  +S+     
Sbjct: 179  PLRHADDRHRGTVLAVSEQIDVPMVATGGVQMHTRQRKPLHDVLTAIRLSKPLSECGLEL 238

Query: 247  RVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              + +  ++ R ++  ++      + L  TVE+A  C+F L       P  +  E     
Sbjct: 239  APSAEQAMRTRMQLAFLYQGEGGEKILRRTVELAALCNFSLDEIEYEYPSEVVPEGM--- 295

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  LR +  AG   R   G   K         +++ EL +IA + +  +FL V D +
Sbjct: 296  -TPAEYLRAETFAGAARRYPNGVSEK------VHAQIEEELGLIAELGYEPFFLTVYDVV 348

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+   I +  GRGS A S   Y L IT+++P   + LF RFL+  R   PD D+DF  
Sbjct: 349  KFARNEGI-LCQGRGSAANSAVCYCLGITEVNPDSGNTLFARFLSRARNEPPDIDVDFEH 407

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL +    V+++ K      +
Sbjct: 408  QRREEVIQYIYKKYGVTRTALAAALITYRTRSALRDVGRALGIDLGIVEQVAKGQAWWDS 467

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 +  A  +  +      P V R  ++  +L G  RH S H  G VI    LS+LVP
Sbjct: 468  R----KEFAQRAGQQGLDPESPLVLRWAQLVDQLRGFPRHLSQHVGGFVIAQGKLSRLVP 523

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVKV---- 596
            +      +  V Q++   +E   L+K D L L  LT ++++LD +     +R        
Sbjct: 524  IENAAMENRRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMVDALPGRREHYGATAK 583

Query: 597  -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              +  +P DD ETY ++    T+G+FQ+ES   +  L  ++P    D++  V++ RPGPI
Sbjct: 584  LAMQNLPDDDTETYDMICRAETIGVFQIESRAQQSMLPRLRPREYYDLVIQVAIVRPGPI 643

Query: 656  DNIV--VYNNRKNGKEK-----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
               +   Y  R+  K       +    P +  +L+ T GV I+QEQVM+IA     ++  
Sbjct: 644  QGGMVHPYLQRREAKRNGNTDCVTYPGPEVKAVLERTLGVPIFQEQVMEIAMKAGDFTAD 703

Query: 709  EADVLRRAMGK-KIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            +AD LRR M   K K  + + +ER +     K          + + +  FA+YGF +SHA
Sbjct: 704  DADRLRRDMAAWKRKGNLTQHQERLVHAMVVKRRYDPAFVEALCKQMEGFAEYGFPESHA 763

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A +A ++Y ++++K H P  F AA +  +        +  Q+AR+ +++++P  V     
Sbjct: 764  AGFAKLAYVSSFLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSHVRVLPADVTASVW 823

Query: 827  DFKVGDNRI-------------YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
            D  +                     L  I+G+    A  I  A A  PF S+ED   R  
Sbjct: 824  DSTLHPRADGETGEDGLVQPDIRLGLNRIRGMRKPAAERIEAARAQAPFTSVEDLAHRAA 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
              + +  VL +   A AL      R Q L                +   H++    +   
Sbjct: 884  LDRHDLNVLAA---ANALKSLAGHRRQALW----------QTLALQEPGHDHALLRQARP 930

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
                + L    +    +    +   LG     HP+++ +  L +M             G 
Sbjct: 931  VEAPLELPAPPIGEEVM---ADYGSLGLSLQSHPVELLRARLERMRFATAATLAGYRNGQ 987

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              R   +V  +Q+  T  G+   +V+  +         +P
Sbjct: 988  LARACGIVTVRQRPGTANGT--IFVSIEDETGAINVILWP 1025


>gi|190893936|ref|YP_001980478.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
 gi|190699215|gb|ACE93300.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
          Length = 1152

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/1075 (24%), Positives = 459/1075 (42%), Gaps = 79/1075 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-- 62
            ++   +F  +   +++S LEGA S   ++ + A  +   + I D N++   +    +A  
Sbjct: 1    MKGERAFFEIGARTNFSFLEGASSPEEMVLQAAYLRLGGLGIADRNSVAGVVRAHAQAEQ 60

Query: 63   -------CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIE 114
                     A +           +   +++    +  F    P I+       G+  L  
Sbjct: 61   IEERYKNRDAILAEAEKTGKKEGIFHPIRIQPGARLVFSDDTPDILAYPCNRRGWANLCR 120

Query: 115  LVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            L+S   L ++  K S  +  + L E G E ++ L    +    +A         E  L  
Sbjct: 121  LLSAGNLKEEAVKGSCILTEAELMEWGDEMMLALVADRTLVESQA----GQTALEDYLER 176

Query: 174  FKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            F++ F   L++ L   + G DR   + +  LA  + +PL+ATN  L+   E     DV++
Sbjct: 177  FRRRFRKALFMVLAPAYDGRDRQVFAVLAMLAARNRVPLIATNQPLYHHPERRPLSDVVI 236

Query: 233  AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
            A+     +SQ         + YLK+  EMV IF D P+A+ENT     + SF L+     
Sbjct: 237  AIREHVQISQAGFLLAPNAERYLKDSREMVRIFGDYPDAVENTQVFFGKLSFSLKELQHN 296

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             P       +D  +  +  L     AG   R  QG  +K        +++D+EL ++   
Sbjct: 297  YP-----SENDPGETPQETLERLTRAGAAKRYPQGVPSK------VAKQIDYELKLVGDK 345

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             ++ YFL V   IQ A+ +   +  GRGS A SV  Y L IT++DP + +LLF+RF++ D
Sbjct: 346  NYASYFLTVHRIIQHARYDLKVLCQGRGSAANSVICYCLEITEVDPQKSTLLFDRFISMD 405

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+DF  DRR+EVI+++  +YG +         + + ++A R+V +A  +    
Sbjct: 406  RDEPPDIDVDFEHDRREEVIQFIYRRYGIDHAGLTAGVTTYRTRSAGREVAKAFGLSEDV 465

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
               +  L+       +S      D++     + DP    +L+ + +L G  RH + H  G
Sbjct: 466  QSAISSLVWGWSEDNLS----ERDAKAAGLDVKDPVTQNVLQYASELLGFPRHLTQHVGG 521

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             VI    L ++VP+ +    D  + +++   ++   ++K D L L  LT L+K+   L  
Sbjct: 522  FVITRDRLDEVVPIMKTAMPDRYMIEWDKDDLDNVKILKVDVLALGMLTCLRKAFSLLEL 581

Query: 592  RG----VKVDLSLIPFDD--HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
                     DL      D     Y ++    TLG+FQ+ES      L  ++P    D++ 
Sbjct: 582  HYDVKKTLADLGNREHGDEGKPVYEMMGRADTLGVFQIESRAQMSMLPRLKPKIFYDLVI 641

Query: 646  LVSLYRPGPI--DNIVVYNNRKNGKE---KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             V++ RPGPI  D +  Y  R+  +     I      ++ +L+ T GV ++QEQ MQIA 
Sbjct: 642  EVAIVRPGPIQGDMVHPYLKRREQRARNIPIEYPSKELEAVLERTLGVPLFQEQAMQIAI 701

Query: 701  LLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
              +G+  +EAD LRRAM   K    +   ++RFI G          A   F  +  F +Y
Sbjct: 702  TAAGFRPAEADKLRRAMATFKRTGTIGDFEKRFIEGMVSKDYEPEFAKQCFNQIKGFGEY 761

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GF +SHAA++A++ Y ++W+K +YP  F AA +  +        +  +DAR+  ++I+  
Sbjct: 762  GFPESHAASFALLVYASSWLKAYYPDVFCAAMLNSQPMGFYAPAQLVRDAREHGVRILAV 821

Query: 820  SVNTPCVDFKVG----------------------DNRIYYSLAAIKGVGTTTARHIMEAS 857
             +N    D  +                        + +      IKG+ +   + ++   
Sbjct: 822  DINESEWDCTLEEAVFDRKTVDFRHGQMREIIKTRHAVRLGFRQIKGLSSDDMKRLVGNR 881

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
                + S+ D   R     L + V+E L  A A      SR + L ++  +       + 
Sbjct: 882  GQG-YGSVRDLWLR---SGLPKSVIERLADADAFRSIHLSRREALWAVRAL-------DV 930

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                +   +F   +          K        +   + R L      HP+   +  LRK
Sbjct: 931  KSAAEELPLFEQVRHIDLQPEPAAKLPDMLPGEQVIEDYRYLSLSLKAHPVSFLREELRK 990

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             GI    + ++   G  + +A +V+ +Q+  + KG  + ++T  +      A  +
Sbjct: 991  AGITRNVDLLSVPNGKRVTIAGLVLVRQRPGSAKG--VIFMTLEDETGVANAIVW 1043


>gi|325068677|ref|ZP_08127350.1| DNA polymerase III, alpha subunit [Actinomyces oris K20]
          Length = 1135

 Score =  754 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/1124 (26%), Positives = 472/1124 (41%), Gaps = 139/1124 (12%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     +  L  HS+YS L+GA   +++          A+A+TD + +   ++ +Q   A
Sbjct: 1    MTGRHRYAELHAHSAYSFLDGANEPDDLASAAVELGLEALALTDHDGVPGIVKHAQAGRA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+  I G +L +                     + +L     GY+RL+  +S+  L   
Sbjct: 61   YGLPTIHGTELTLADGS----------------HLPVLARNPVGYRRLVSAISQHNLDAG 104

Query: 125  GKQSVRICLSWLQ-----------EIGTEGLIMLTGGSSGPI------DRAFFFNSSQVA 167
             +Q      + L            E  +   ++LTG ++GP+       R       + A
Sbjct: 105  HRQEPAHDPTALASALRSDPTDQTEAASGSCLVLTGTANGPLRRALGDPRRPDTWDLKAA 164

Query: 168  EKRLLTFKKLF--GDR-----------------------LYVNLQRHRGY-DRYRESQVV 201
            +  L    +LF   DR                       L V L    G  D      + 
Sbjct: 165  DACLGHLTELFAAPDRGRPFDAGPTTTAHRQVEGDAAIGLAVELTLDGGPTDAALTDALT 224

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +LA+ H LPLVAT         D    DVL A    T +            +L+   +M 
Sbjct: 225  RLAHDHRLPLVATGAVRCARPTDARLADVLTATRLVTDLEGARGHLPAIGRWLRGAQDMA 284

Query: 262  SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
             +    P+A++   E+A   +F L + AP LP     E         + LR     G   
Sbjct: 285  LLHRRRPDAVDLAAELASDLAFDLSLIAPDLPDADVPEG----HTPASWLRELTRQGATR 340

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
            R   G   +   A +    L+ EL VI  + F GYFLIV   +++  ++ I +  GRGS 
Sbjct: 341  RY--GTPQEHPRAWEV---LNHELEVIESLGFPGYFLIVHAIVEFCTQSGI-LCQGRGSA 394

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            A S   YAL IT +D +R  +LFERFL+P R   PD D+D    RR+EVI++V ++YG E
Sbjct: 395  ANSAVCYALGITAVDAVRHQMLFERFLSPGRAGYPDIDLDIEACRREEVIQHVYSRYGRE 454

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDSRFRE 500
            R AQ+    S + ++A+RD  RAL  P    D   K +       P  L           
Sbjct: 455  RAAQVANVISYRPRSAVRDAARALGHPAGVQDAWAKQMDRWASVRPGGL----------- 503

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
               +D   + +L+I++KL  L RH   H  G+V+  RP++++ P+      D  V Q++ 
Sbjct: 504  TGQSDEVPEPVLDIAEKLLRLPRHLGVHPGGMVLCGRPVTEVCPVRWAAMDDRSVLQWDK 563

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR------------------GVKVDLSLIP 602
                +AGL+KFD LGL  LT L+ +   LAQR                  G    L  +P
Sbjct: 564  DDCAEAGLVKFDLLGLGALTALRLAFTTLAQRGQTVPDAVTEGELRTSQSGRPWGLHTLP 623

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVV 660
             +D   Y LLT   T+G+FQ+ES      L  ++P    DI+  V+L RPGPI    +  
Sbjct: 624  EEDPAVYRLLTAADTVGVFQVESRAQMATLPRLRPQEFYDIVVEVALIRPGPIQGDAVNP 683

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+ G+E++  +H  + P L +T GV ++QEQ+MQIA   +G+S +EAD LR+AM  K
Sbjct: 684  YIRRRLGREEVTYLHGSLKPALTKTLGVPLFQEQLMQIAVDAAGFSPAEADSLRQAMGAK 743

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            +  E MD  +++ I+G    GI    A  I+  L  FA++GF +SHA ++A + Y +AW+
Sbjct: 744  RSIERMDALRDKLIAGMRSRGIDAPTAETIYSKLRSFAEFGFPESHAFSFAYLVYASAWL 803

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------ 833
            K   P +F A  +  +       +    DAR+  ++++P  +N   V   V         
Sbjct: 804  KARKPEDFYAGVLAAQPMGFWSPQSLVADARRHGVRVLPADINRSLVQATVEQREDHQEA 863

Query: 834  -------------------------RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLED 867
                                      +   LA IKG+G   A+ I+ E  A  P+  L D
Sbjct: 864  GHSDQWEPLRPHPAALSSLDVHDDLAVRLGLAPIKGLGERAAQAIVTERRAHGPYRDLAD 923

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
               RV     +R  LESL  +GALD  G  R Q L +   +                  +
Sbjct: 924  LARRVSL---SRSRLESLAVSGALDSLGVERRQALWAAGVLSDEHGRRRGASRRGQGAWY 980

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                   +         +     R   +  + G    G PL + +PIL   G+    +  
Sbjct: 981  QPTLPGTAVGAQAPTLPIMTDRERQAADLSLTGVSTQGSPLKLLRPILADDGVLSAADLA 1040

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                G+ +R+A +V  +Q+  T  G  + ++   +         
Sbjct: 1041 DQEHGSRVRVAGVVTHRQRPHTASG--MIFLNLEDETGLLNVVC 1082


>gi|319793113|ref|YP_004154753.1| DNA polymerase iii, alpha subunit [Variovorax paradoxus EPS]
 gi|315595576|gb|ADU36642.1| DNA polymerase III, alpha subunit [Variovorax paradoxus EPS]
          Length = 1118

 Score =  754 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/1064 (24%), Positives = 443/1064 (41%), Gaps = 79/1064 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----QKACA 64
            P +  L   +++S   GA +   ++++       A+AITD  ++   +            
Sbjct: 33   PDYAELHCLTNFSFQRGASTPEEVVERAYQLGYAALAITDECSVAGIVRAYVCRRDMEHT 92

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
                     +     ++       G         +V++ +  EG+  L E ++     + 
Sbjct: 93   LDEYEREHPEEPPIPRNLTFRLLFGSEFRFERFRLVVIANDTEGWGNLCEFITAARNTEL 152

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA--EKRLLTFKKLFGDRL 182
             K   R+            +  L       +       +  VA   + LL  K L+   L
Sbjct: 153  PKGEYRVSWED------SDVASLQNCQVLFVPHRESGGAVDVATLHEDLLAAKALYAGNL 206

Query: 183  YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ ++  +   D      ++Q +    +PLVA  +    +      HDVL AV     V+
Sbjct: 207  WLAVEMLNELDDDLWFVTLMQASEQTGVPLVAAGDVHMHARSRKPLHDVLTAVREGKTVA 266

Query: 242  QKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            +      +  + +L+ R  +  ++  LPE L NT+ +A RC F  +V           E 
Sbjct: 267  ECGFALQSNAERHLRQRVRLAELY--LPEMLANTLVVAERCRFDPKVIRDNYK--YPLEM 322

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +     L  K  AG + R   G           R +L  EL++I  +++  +FL V
Sbjct: 323  LGSNETATQTLARKTWAGAQERYPGGI------PDAVRAQLHKELDLIRELEYEMFFLTV 376

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +++AK   I +  GRGS A SV  Y L IT I P +  LLFERFL+  R   PD D+
Sbjct: 377  EDIVRFAKSQKI-LCQGRGSSANSVVCYCLGITAISPEKSHLLFERFLSRHRHEPPDIDV 435

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR+EVI+Y+  KYG ER A        ++++ALRDVG+A+ +    VD   K   
Sbjct: 436  DFEHQRREEVIQYIYEKYGRERAAIAAVVICYRSRSALRDVGKAIGIDERLVDEFAKDHY 495

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  +  Q  A  +R    +  +  + + +E++Q+L+G  RH S H  G V+    L+
Sbjct: 496  WFDDAVLGEQLNAACARV-GVKEDEFKLVQWIELTQRLKGFPRHLSQHVGGFVLTHTKLT 554

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599
            +LVP+ +    D  V Q+    +E  G++K D L L  L+ +++ LD +   RG  V + 
Sbjct: 555  RLVPVEKASMKDRSVIQWEKDDLEAMGMLKVDVLALGMLSAIRRGLDHMNRWRGSMVQMH 614

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P DD + + ++    T+G+FQ+ES      L  ++P C ED++  V++ RPGPI   +
Sbjct: 615  DVPHDDQKVFDMICDADTVGVFQIESRAQMSMLPRLKPRCYEDLVIEVAIVRPGPIQGGM 674

Query: 660  VYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            V+   K  +       I      +   L+ T G+ I+QEQVMQIA + + +S  EAD LR
Sbjct: 675  VHPYLKQRERVAKGLPIHYEKDELREALERTLGIPIFQEQVMQIAMIAARFSADEADQLR 734

Query: 715  RAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RAM   K K  +DK   + ++G   N   +  A  IF+ +  F DYGF +SHAA++A++ 
Sbjct: 735  RAMAAWKRKGGLDKFHAKLVNGMVDNEYPREFAEAIFKQILGFGDYGFPESHAASFALLV 794

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831
              ++W+K + P  FLAA +  +        +  QDAR+  +++ P  V     D  +   
Sbjct: 795  TVSSWLKNYEPACFLAALLDSQPMGFYSPSQLVQDARRHGVEVRPVDVTHSDFDTTLEAR 854

Query: 832  -----------------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
                                      +   L  I G+       +++A A  PF S ED 
Sbjct: 855  APDAPRMPPSTDARYAERLGNENQPAVRLGLNRISGLSKEGVERLLKARAQSPFTSTEDL 914

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              R +    +   L +             R Q +      ++    ++    N+   +  
Sbjct: 915  ALRAELDGKDMAALAAADAL---MSLSGHRRQQVWDATAQRRSPALLKGVPINEQVLLL- 970

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
                                      +   LG     HPL + +P L +M +   EE  A
Sbjct: 971  ---------------PAAPEGEEIVGDYASLGLTLRRHPLALLRPRLSRMKLMSAEELRA 1015

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               G  +R   +V  +Q+  T  G+   +VT  +         +
Sbjct: 1016 QPTGRTVRACGIVKGRQRPGTANGT--IFVTLEDETGNVNVIVW 1057


>gi|171910611|ref|ZP_02926081.1| DNA polymerase III, alpha subunit [Verrucomicrobium spinosum DSM
            4136]
          Length = 1032

 Score =  754 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/1026 (27%), Positives = 487/1026 (47%), Gaps = 66/1026 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L   +++S L GA S   ++ + A      +AITD +  + +     K    G++ 
Sbjct: 2    SFVELHARTAFSFLRGASSPEEMMTRAADLGMDCVAITDRDGYYGSARAHYKGKELGLRA 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G ++ ++ +                  + LLV+T +GYQ L  L++R  L    K   
Sbjct: 62   ITGMEITMEDE----------------TVLPLLVATRQGYQNLARLMTRAKLRT-TKGQS 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+  S L E   EG+++L+G   GP+ RA    ++  A   +    ++F  +++++ LQR
Sbjct: 105  RVLWSELPE-HAEGVVVLSGDEEGPVQRA-LQQNAAEAPAVVEKLCRIFGRNQVWMELQR 162

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR   +  R  Q+  LA   +LPL+A+N      +E     D    + H T +       
Sbjct: 163  HRMRGETLRNRQIRDLAELCKLPLLASNGPCHARQEGRMLMDAFTCLRHHTHLDAAGLLL 222

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  +LKN  +M ++F+DLPEA++NT  ++ +  F L+      P +      D    
Sbjct: 223  APNSQRHLKNHGDMKALFADLPEAMDNTRRLSDQLEFGLEHLGYEFPCYDVPPGHD---- 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +++ LR     G   R   G  A+       R +L+ EL++I+R+KFSGYFLIV   +++
Sbjct: 279  QDSYLRELTYEGARRRFHGGVNAQ------VRAQLEKELDLISRLKFSGYFLIVWSLVKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC-QD 425
            A  ++I V  GRGS A S   Y+L IT  DP+   LLFERFL+  R S PD D+D    D
Sbjct: 333  ACDSDILV-QGRGSAANSAVCYSLGITHADPIAGKLLFERFLSEGRNSWPDIDLDLPSGD 391

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR++VI+ +  +Y     A      + + ++A+R++G+ L +P   + R   L  N    
Sbjct: 392  RREQVIQELYRRYAPYGAAMTANVITYRGRSAMREMGKVLNLPEDVMGRFSDLYANG-DF 450

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            P +LQ + D  R     +  P +  ++ +  ++ GL RH   H+ G+V+  + L  +VP+
Sbjct: 451  PHTLQ-LKDQIRQAGLPMDHPRLVAMVRLYHQVYGLPRHLGQHSGGMVLCTKGLDSIVPL 509

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV--KVDLSLIPF 603
                     V Q++    E  G+IK D LGL  + +LQ SL     RG      L  IP 
Sbjct: 510  EPATMPGRVVVQWDKDDCEDLGIIKVDLLGLGMMAVLQDSLTLCKARGREGPYGLHEIPK 569

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            DD  TY ++    T+G+FQ+ES      L  ++P+C  D++  V++ RPGPI  + +  Y
Sbjct: 570  DDPATYEMMQKADTIGVFQIESRAQMATLPRLKPECFYDLVIEVAIIRPGPIVGNMVHPY 629

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R+ G+EKI  IH   + +L+ T GV ++QEQ++++A +++G+S  EA+ LRRAM   +
Sbjct: 630  IRRRQGREKIDFIHAEFEDILQRTLGVPLFQEQLLRMAMVIAGFSGGEAEELRRAMSFHR 689

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             +E M K  ++  +   + G+++ +   I   ++ FA YGF +SHA ++A+++  + W+K
Sbjct: 690  SEERMHKVMDKLRAAMEERGVAQEVQEKITACISSFALYGFPESHAISFAILANASVWLK 749

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSL 839
             H  VEF A  +  +           +DA+Q  ++I P  V    V   V D++     L
Sbjct: 750  AHRAVEFYAGLLNNQPMGFYSTSTLVRDAKQHGLRIRPACVVVSDVLCTVEDDQTLRLGL 809

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
               +G+   +   I+   A +P+  L+DF  R    K  RRVL     AGAL+  G  R 
Sbjct: 810  NQFRGLSRGSQERIIAERAVRPWRDLDDFLRRSGLDKKERRVL---AKAGALNQLGLHRR 866

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
              L  ++  ++           +   +F                   N+  R   + +  
Sbjct: 867  SALWQVELARQEEDLFTPREVQQEMPLF-----------------PMNAMERLNADYQTQ 909

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
                  HP+  ++  L  +      E      G  I +  +V+ +Q+  T KG    +++
Sbjct: 910  RLTTGPHPMAHHRVRLPHL--WPACELANGRHGQRIFVGGLVICRQRPGTAKGHM--FIS 965

Query: 1020 FSEPAK 1025
              +   
Sbjct: 966  LEDETG 971


>gi|311744021|ref|ZP_07717827.1| error-prone DNA polymerase [Aeromicrobium marinum DSM 15272]
 gi|311313151|gb|EFQ83062.1| error-prone DNA polymerase [Aeromicrobium marinum DSM 15272]
          Length = 1133

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/1070 (26%), Positives = 470/1070 (43%), Gaps = 103/1070 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS YS L+GA    ++ ++       A+A+TD +    A  F++ A   G+  
Sbjct: 56   PYAELHCHSHYSFLDGASGPADLAEEAVRLGLSALALTDHDGFAGAPVFAEAAQEHGLAT 115

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + G +L + +        Q     P    +++L   AEGY RL   ++  +L    K   
Sbjct: 116  VFGAELSLGLPG-----PQNGVADPVGTHLLVLARGAEGYHRLAAAITDAHLHGDEKGRP 170

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
               L  L   G +  I+LTG   G +  A        A   L     LFG D + V L  
Sbjct: 171  VYDLDQLAAHGRDHWIVLTGCRKGAVRHALATAGVSAAAAELDRLTALFGLDHVVVELTH 230

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
            H   D   R   +  LA  H LP+VAT N    +         + A+     ++  D   
Sbjct: 231  HGLPDDSRRNDALASLAADHGLPVVATGNVHHATPAGGRLAAAMAAIRARRSLADLDGWL 290

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   +L++ +EM + F+  P A+  +V IA + +F L+   P LP             
Sbjct: 291  PPSGAAHLRSGAEMQARFARYPGAVARSVTIAEQIAFDLRSVTPRLPVRGVPAG----HT 346

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR  A  G+  R A             R+R++ EL VIA   F GYFLIV D ++ 
Sbjct: 347  NLSWLRELADRGIARRYAHDPGPA-------RERIERELAVIADKGFEGYFLIVHDIVRE 399

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I +  GRGS A S   YAL IT +D +R+ L FERFL   R   PD D+DF  DR
Sbjct: 400  ARERGI-LCQGRGSSANSALCYALEITAVDSIRYGLPFERFLASTRDEEPDIDVDFDSDR 458

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI++V + YG    AQ+    + + ++A+RD  +AL     Q D   +         
Sbjct: 459  REEVIQWVYDTYGRRNAAQVANVITYRPRSAIRDAAKALGYSTGQQDAWSRSAERWGG-- 516

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                 +  D+              ++E++++L G  RH   H+ G+++ +RP+ ++ P+ 
Sbjct: 517  -----LEPDAELPAP---------VVELAEQLMGSPRHLGIHSGGMILTERPIGEVCPIE 562

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            R   +D  V Q++    E  GL+KFD LGL  L  L  +   +    G +  L  IP ++
Sbjct: 563  RARMTDRTVLQWDKDACEWMGLVKFDLLGLGMLGALDHTFGLVETHLGERWGLDTIPKEE 622

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
               + +L    ++G+FQ+ES      L  +QP    D+   ++L RPGPI       Y  
Sbjct: 623  PGVFDMLCRADSIGVFQVESRAQIGTLPRLQPRSYYDLAIEIALIRPGPIQGGAVHPYIR 682

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R  G+E +   HP+++P+L+ T+GV ++QEQ+MQ+A +L G +  EAD+LRRAM  K+  
Sbjct: 683  RATGREPVTYPHPVLEPVLRRTKGVPLFQEQLMQMAIVLGGCTGDEADLLRRAMGSKRGI 742

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E +++ K++  +G +++GI+   A  I+  +  FA++GF +SHA ++A++ Y ++W+K H
Sbjct: 743  ERIERLKDQLFTGMAEHGITGEAADAIYVTIQSFANFGFAESHALSFALLVYASSWLKLH 802

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC----------------- 825
            YP  FLAA +  +       +    DAR   +    P +                     
Sbjct: 803  YPAAFLAALLRNQPMGFYSPQSLVADARHHGVTTRGPDIVRSMATADLEPLDARSVRASG 862

Query: 826  ------------------------VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
                                       +     +   L A++GVG   A  ++ A  ++P
Sbjct: 863  LDSCLHREQPPMTRFDPDGVDPTTTHRRDEGLAVRLGLDAVQGVGAEVAARVVAAREERP 922

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F  + D   R     L    +ESL  AGA D FG +R Q L +               T+
Sbjct: 923  FADMADVARRT---ALTVAQMESLATAGAFDSFGLTRRQALWNAGY------------TD 967

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            + + +      T +   TL   S   +++    +          HP++  + +L    + 
Sbjct: 968  RPDQLPG--TATTAPPPTLPGMSAVETTL---ADLWSTRISPDRHPMEHLRELLTSEQVL 1022

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                ++A   G  +R+A ++  +Q+  T  G  + ++   +         
Sbjct: 1023 SVAGAMAGEHGRRVRVAGLITHRQRPMTASG--VTFLNLEDETGMLNVVV 1070


>gi|222151616|ref|YP_002560772.1| DNA polymerase III alpha chain [Macrococcus caseolyticus JCSC5402]
 gi|222120741|dbj|BAH18076.1| DNA polymerase III alpha chain [Macrococcus caseolyticus JCSC5402]
          Length = 1051

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/1024 (31%), Positives = 526/1024 (51%), Gaps = 85/1024 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL VHS+Y LL   + ++ ++ ++   ++ A+A+TD N LF    F +   AA I+PII
Sbjct: 6    VHLNVHSAYDLLHSTVEIDALVTRVTELKEHAVALTDFNVLFGVQSFYKACIAADIKPII 65

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +                      V L     GY  LI+L SR+ L    K     
Sbjct: 66   GMEICVTDG-------------LKQLRAVCLARNNTGYVNLIKLSSRIQL----KGVELT 108

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             L WL +    G+I++                              F           +G
Sbjct: 109  PLKWLSQY-QSGIIVI------------------------------FKSITESESHFTQG 137

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             + Y          + +   V   + L+L     +  +VL A+  +  +  +        
Sbjct: 138  IESYYICH----NSSLDAKKVYIEDVLYLESSGVQHLEVLNAIEENKKLPLEMVRIKAGT 193

Query: 252  HYLKNRSEMVSIFSDLP-EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             Y+K+  +++ +   +P E L+ T EIA +C+  +  H   +P+F  +         +  
Sbjct: 194  AYMKDDVQLIDL--KIPQEYLDRTHEIADQCNVDITKHHATMPKFPVE-----GYSSDAY 246

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L           L +      +  + Y QRL +E +VI +M ++ YFLIV D IQ+AK++
Sbjct: 247  LMKL--------LQEKKREIPHFDERYEQRLRYEYDVITQMGYADYFLIVGDLIQYAKEH 298

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I VGPGRGS  GS+ +Y L IT++DP++++LLFERFLNP+R++MPD DIDF   +RD+V
Sbjct: 299  DILVGPGRGSSGGSLISYVLGITEVDPVQYNLLFERFLNPERVTMPDIDIDFEDTKRDQV 358

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+Y  +KYG   V+ I+TFG L A+A +RD GR LQ   +++ ++  LIP      ++L 
Sbjct: 359  IQYAVDKYGKYNVSGIVTFGHLNARAVMRDTGRILQFSDAELKKISTLIPKRVG--ITLD 416

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
             +  D  F      D    +  +I+  LEGL R+ STHAAG++I D+ L+  VP+     
Sbjct: 417  DMKMDEDFMRFINEDDRRKQWFDIAYALEGLPRNTSTHAAGVIIHDQLLTDYVPII--EG 474

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETY 609
              + +TQ+ M  +E  GL+K DFLGL+ L++++  +D +  Q   ++DL+ +P DD + Y
Sbjct: 475  DSVSLTQWTMTEVESIGLLKIDFLGLRNLSIIRNVMDQVRIQFNQQLDLNTLPLDDPKVY 534

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T GIFQLES G+R  L  ++P    DI+A+++LYRPGP++ I VY  R++G +
Sbjct: 535  TLLAQGDTTGIFQLESEGIRNVLRNLKPSHFNDIVAVLALYRPGPMEQIPVYIERRHGAQ 594

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +  IH  +  +LK+T GVIIYQEQ+MQIA   +G+S  EAD+LRRAM KK    +  +K
Sbjct: 595  SVDYIHDDLKAILKDTFGVIIYQEQIMQIANQFAGFSYGEADILRRAMSKKDMSVLLTEK 654

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E FI G+   G  K  A  I+EL+ KFA+YGF K+HA AYA I+Y   ++K HYP  F  
Sbjct: 655  EHFILGSVNKGYDKQTAEAIYELILKFANYGFPKAHAVAYAKIAYYMLYLKVHYPNIFYT 714

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++ ++ +  K K+   + ++  I I    +N     ++   + I  +L  IKG+G  +
Sbjct: 715  AILSNQIGSEHKTKEIIDEVKKRGIPIYAADINKAHWYYRTYKDGILNALGVIKGLGYKS 774

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
             + I++A     F  + DFC+R+ S+  ++ +LE+L+ AG  D FG++R  LL SLD I 
Sbjct: 775  VQDIIDARKQGSFKDIYDFCARIPSRIASKPLLEALIHAGCFDSFGHTRATLLASLDMII 834

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               +   +   +  E++  ++K    D I  E+ S    +     E+  LGFY + HP++
Sbjct: 835  D-VERTNEGEESFLESLGLNKKK---DYIIHEEMSDMKKAE---YEKAYLGFYLTNHPVE 887

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 L+ + +    + +         +   +   ++ +T+ G  + ++   +     + 
Sbjct: 888  SRFKALQYLPLYKIAQRLNQH-----YMLIFIDEVRRIRTKNGQPMAFIKGFDGTDNIDI 942

Query: 1030 NFFP 1033
              FP
Sbjct: 943  VCFP 946


>gi|241206898|ref|YP_002977994.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv.
            trifolii WSM1325]
 gi|240860788|gb|ACS58455.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM1325]
          Length = 1154

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/1075 (23%), Positives = 454/1075 (42%), Gaps = 79/1075 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-- 62
            +  + +   +   +++S LEGA     ++ + A  +   + I D N++   +    +A  
Sbjct: 1    MTIARALFEIGTRTNFSFLEGASGPEEMVVQAARLRLGGLGIADRNSVAGVVRAHAQAEQ 60

Query: 63   -------CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIE 114
                     A +          ++ D +++    +  F    P I+    +  G+  L  
Sbjct: 61   LEERYKNKDAILAQAKKEGKKEEILDPIRIQPGARLVFSDGTPDILAYPRSRRGWANLCR 120

Query: 115  LVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            L+S   L ++  K S  +  + L E G E ++ L    +    +A         E  L  
Sbjct: 121  LLSAGNLKEEAVKGSCILTEAELMEWGDEMMLALVPDRTLVGHQA----GQPTLEDYLER 176

Query: 174  FKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            F++ F    Y+ L   + G DR   + +  LA  + +PL+ATN  L+   E     DV++
Sbjct: 177  FRRRFRKAFYMALAPAYDGRDRQVFAVLAMLAARNRVPLIATNQPLYHHPERRPLSDVVI 236

Query: 233  AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
            A+     +SQ         + YLK+  EM  IF + P A+ENT     R +F L+     
Sbjct: 237  AIREHVQISQAGFLLAPNAERYLKDSREMARIFREYPNAIENTQTFFDRLTFSLKELEHN 296

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             P       +D  +  +  L     AG   R  +G   K         ++++EL++I + 
Sbjct: 297  YPP-----ENDPGETPQETLERLTRAGAARRYPKGIPPK------VAPQIEYELDLIKKK 345

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            K++ YFL V   IQ A+     +  GRGS A SV  Y L IT+++P + +LLF+RF++ D
Sbjct: 346  KYASYFLTVHRIIQHARYELKVLCQGRGSAANSVICYCLEITEVNPEKSTLLFDRFISMD 405

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+DF  DRR+EVI+++  +YG E         + + ++A R+V +A  +    
Sbjct: 406  RDEPPDIDVDFEHDRREEVIQFIYKRYGIEHAGLTAGVTTYRTRSAGREVSKAFGLSEDV 465

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
               +  L+       +    +  D++     + DP    +L+ + +L G  RH + H  G
Sbjct: 466  QSAISSLVWGWSEDNL----LERDAKAAGLDIKDPVTRNVLQYATELLGFPRHLTQHVGG 521

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             VI    L ++VP+ +    D  + +++   ++   ++K D L L  LT L+K+   L  
Sbjct: 522  FVITRDRLDEVVPIMKTAMPDRYMIEWDKDDLDNVKILKVDVLALGMLTCLRKAFSLLEL 581

Query: 592  RG----VKVDLSLIPFDD--HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
                     DL      D     Y ++    TLG+FQ+ES      L  ++P    D++ 
Sbjct: 582  HYDVKKTLADLGNKEHGDEGEPVYEMMGRADTLGVFQIESRAQMSMLPRLKPKVFYDLVI 641

Query: 646  LVSLYRPGPI--DNIVVYNNRKNGKE---KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             V++ RPGPI  D +  Y  R+  +     I      ++ +L+ T GV ++QEQ MQIA 
Sbjct: 642  EVAIVRPGPIQGDMVHPYLKRREQRAKNIPIKYPSKELETVLERTLGVPLFQEQAMQIAI 701

Query: 701  LLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
              +G+  +EAD LRRAM   K    +   ++RFI G          A   F  +  F +Y
Sbjct: 702  TAAGFKPAEADKLRRAMATFKRTGTIGNFEKRFIEGMVSKDYDPEFAKQCFNQIKGFGEY 761

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GF +SHAA++A++ Y ++W+K +YP  F  A +  +        +  +DAR+  + I+P 
Sbjct: 762  GFPESHAASFALLVYASSWLKAYYPDVFCTAMLNSQPMGFYAPAQLVRDAREHGVAILPV 821

Query: 820  SVNTPCVDFKVG----------------------DNRIYYSLAAIKGVGTTTARHIMEAS 857
             +N    D  +                        + +      IKG+ T     ++   
Sbjct: 822  DINDSNWDCGLEEAAFDRNAIDFRHHEMREIIKTRHAVRLGFRQIKGLSTDDMERLVSHR 881

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
             +  + S+ D   R     L + V+E L  A A      SR   L ++  +       + 
Sbjct: 882  GEG-YSSVRDLWLR---SGLQKSVIERLADADAFRSLKLSRRDALWAVRAL-------DV 930

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                +   +F   +          K        +   + R L      HP+   +  LRK
Sbjct: 931  RSATEELPLFEQVRHVDLQAEPAAKLPEMLPGEQVIEDYRYLSLSLKAHPVSFLREELRK 990

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             GI    + +    G  + +A +V+ +Q+  + KG  + ++T  +      A  +
Sbjct: 991  AGITRNVDLLKVANGKRVTIAGLVLVRQRPGSAKG--VIFMTLEDETGVANAIVW 1043


>gi|209551461|ref|YP_002283378.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv.
            trifolii WSM2304]
 gi|209537217|gb|ACI57152.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM2304]
          Length = 1150

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/1075 (23%), Positives = 451/1075 (41%), Gaps = 77/1075 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-- 62
            ++   +F  + V +++S LEGA     ++ + A  +   + I D N++   +    +A  
Sbjct: 1    MKSGSAFFEIGVRTNFSFLEGASGPEEMVVQAAHLRLGGLGIADRNSVAGVVRAHAQALQ 60

Query: 63   -------CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIE 114
                     A +          ++ + +++    +  F    P I+       G+  L  
Sbjct: 61   LEERYRNRDAILAQAEKEGKREEILEPIRIQPGARLVFSDDTPDILAYPRNRRGWANLCR 120

Query: 115  LVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            L+S   L ++  K +  +  + L E G E ++ L       I        S + +     
Sbjct: 121  LLSAGNLKEEAVKGNCILTEAELMEWGDEMMLALVPDR---ILVDHQEGQSALEDYLERF 177

Query: 174  FKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             ++   D        + G DR   + +  LA  + +PL+ATN  L+   E     DV++A
Sbjct: 178  RRRFRKDFFMALAPAYDGRDRQVFAVLAMLAARNRVPLIATNQPLYHHPERRPLSDVVIA 237

Query: 234  VAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +     + Q         + YLK+  EMV IF D P A+ENT     R +F L+      
Sbjct: 238  IREHVQIVQAGFLLAPNAERYLKDSREMVRIFRDYPGAIENTQVFFGRLTFSLKELEHNY 297

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P       +D  +  +  L     AG   R  +G  AK        +++D+EL +I    
Sbjct: 298  PP-----ENDPGETPQETLERLTRAGAARRYPEGIPAK------VAKQIDYELKLIGDKN 346

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            ++ YFL V   I  A+ +   +  GRGS A SV  Y L IT++DP + SLLF+RF++ DR
Sbjct: 347  YASYFLTVHRIIHHARYDLKVLCQGRGSAANSVICYCLEITEVDPQKSSLLFDRFISMDR 406

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
               PD D+DF  DRR+EVI+++   Y  E         + + ++A R+V +A  +     
Sbjct: 407  DEPPDIDVDFEHDRREEVIQFIYRNYKREHAGLTAGVTTYRTRSAGREVAKAFGLSEDVQ 466

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
              +  L+       +S      D++     + DP    +L+ + +L G  RH + H  G 
Sbjct: 467  SAISSLVWGWSEDNLS----ERDAKAAGLDIKDPVTRNVLKYASELLGFPRHLTQHVGGF 522

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI    L ++VP+ +    D  + +++   ++   ++K D L L  LT L+K    L   
Sbjct: 523  VITRDRLDEVVPIMKTAMPDRYMIEWDKDDLDNVKILKVDVLALGMLTCLRKGFSLLELH 582

Query: 593  G----VKVDLSLIPFDDH--ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
                    DL      D     Y ++    TLG+FQ+ES      L  ++P    D++  
Sbjct: 583  YDVKKTLADLGNREHGDEGRPVYEMMGRADTLGVFQIESRAQMSMLPRLKPKLFYDLVIE 642

Query: 647  VSLYRPGPI--DNIVVYNNRKNGKE---KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            V++ RPGPI  D +  Y  R++ +     I      +  +L+ T GV ++QEQ MQIA  
Sbjct: 643  VAIVRPGPIQGDMVHPYLKRRDQRAKNIPIEYPSEELKAVLERTLGVPLFQEQAMQIAIT 702

Query: 702  LSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             +G++ +EAD LRRAM   K    +   + RFI G +  G ++  A   F  +  F +YG
Sbjct: 703  AAGFAPAEADKLRRAMATFKRTGTIGNFETRFIEGMTSKGYAREFAQQCFNQIKGFGEYG 762

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            F +SHAA++A++ Y ++W+K +YP  F AA +  +        +  +DAR+  ++I+P  
Sbjct: 763  FPESHAASFALLVYASSWLKAYYPDVFCAAMLNSQPMGFYAPAQLVRDAREHGVKILPVD 822

Query: 821  VNTPCVDFKVG----------------------DNRIYYSLAAIKGVGTTTARHIMEASA 858
            +N    D  +                        + +      IKGV       +++   
Sbjct: 823  INESDWDCDLEEAAFDPNAVDFRHREMRGIIRARHAVRLGFRQIKGVSDKEMELLVKNRG 882

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
               + S+ D   R     L + V+E L  A A      SR   L ++  +       +  
Sbjct: 883  KG-YGSVRDLWLR---SGLQKSVIERLADADAFQSLRLSRRDALWAVRAL-------DVK 931

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
               +   +F   +          K        +   + R L      HP+   +  LR  
Sbjct: 932  SAAEELPLFEQARHVDLQAEPATKLPEMLPGEQVIEDYRYLSLSLKAHPVSFLREELRHA 991

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            G+    + +    G  + +A +V+ +Q+  + KG  + ++T  +      A  +P
Sbjct: 992  GVTRNVDLLTVANGRRVTIAGLVLVRQRPGSAKG--VIFMTLEDETGVANAIVWP 1044


>gi|149184845|ref|ZP_01863163.1| DNA polymerase III alpha chain [Erythrobacter sp. SD-21]
 gi|148832165|gb|EDL50598.1| DNA polymerase III alpha chain [Erythrobacter sp. SD-21]
          Length = 1216

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/1109 (23%), Positives = 452/1109 (40%), Gaps = 132/1109 (11%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             ++P FV L + S +S L GA    +++ +  A    AI I D N +   +    +A   
Sbjct: 40   SRAP-FVELGLVSCFSFLRGASDAVDLVLQARALGYDAIGIADANTMAGVVRVHTEAKTL 98

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-- 123
             ++P IGC                +       + +    + + Y RL  L+S   +    
Sbjct: 99   KLKPCIGC----------------RIETVEGLAFLAYPKSRKAYGRLCRLISAGRMRTLS 142

Query: 124  ---QGKQSVRICLSWLQEIGTEGLIMLTGGSS---------------------------- 152
               Q K    I L  L +      ++L                                 
Sbjct: 143  GEWQEKGECDISLEMLAKHSAGVQLILIPPRDLDQTFTIEVESNVVPFRHPGPRAGVPLP 202

Query: 153  -----------GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVV 201
                       G +DR     S +     L    +L   R       +   D  +  Q+ 
Sbjct: 203  SKESGPPDQVRGDVDRVHMEGSFEDILPHLA--AQLPTLRYIAAAFLYTDSDVAQIEQLD 260

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEM 260
             LA  + L ++ATN+  + + +     DV+ A+ H T V++         + YLK    M
Sbjct: 261  TLAKANGLSILATNDVHYATPDKRPLQDVMTAIRHKTTVARAGHLLHGNAERYLKPPETM 320

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +F   P A+    E+A  C F L       P    +E      E ++ L ++   G E
Sbjct: 321  CRLFERWPHAISAAREVADACDFSLDELQYEYP----EELYPGGAEPQDYLESETWKGAE 376

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP--VGPGR 378
             R  +G              L  EL +I +M  + YFL + D + +A++   P  +  GR
Sbjct: 377  WRYPEGV------PDSVTDTLHKELALIGKMDLARYFLTIKDIVDFARQKVDPPILCQGR 430

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GS A S   Y L IT++DP +  LLF+RF++ DR   PD D+DF  +RR+EVI+Y+  KY
Sbjct: 431  GSAANSAVCYCLGITNVDPAQHQLLFDRFISEDRKEPPDIDVDFEHERREEVIQYLYRKY 490

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G  R     T    + + A+R+VG+A+ +       L K +       +S +   +    
Sbjct: 491  GRHRAGLCATVIHYRPRMAIREVGKAMGLTEDVTAALAKTVWGGWGREISEKHAQETG-- 548

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
                + DP + R+L +++++ G+ RH S H  G ++ +  L++ VP+      +    ++
Sbjct: 549  --MDVTDPHLKRVLRLTEQMIGMPRHLSQHVGGFILTESALTETVPVGNGAMPERSFIEW 606

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGT 617
            +   IE  G++K D L L  LT ++K LD L       + L+ +P +D ETY +L    +
Sbjct: 607  DKDDIEALGILKVDVLALGMLTCIRKCLDLLGDHHGRTLSLANVPREDPETYAMLRAGDS 666

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSI- 674
            LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  R+ G E +V   
Sbjct: 667  LGVFQVESRAQMNMLPRLRPRQFYDLVIQVAIVRPGPIQGDMVHPYLKRRRGAEPVVIPA 726

Query: 675  ----H---PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMD 726
                H     +  +L+ T GV I+QEQ M+IA   + +S  EA+ LR+AM   + +  +D
Sbjct: 727  PSPQHGPPDELSSILERTLGVPIFQEQAMKIALDAAKFSSKEANRLRKAMATFRSRGMVD 786

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + ++  +      G  +  +   F  +  F +YGF +SHAA++A + Y ++W+K H+P  
Sbjct: 787  ELQDMMVERMVHRGYDRDFSQRCFNQIRGFGEYGFPESHAASFAHLVYVSSWLKCHFPAA 846

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--------------- 831
            F  A +  +        +  +DA +  ++++P  VN    D  +                
Sbjct: 847  FACALLNSQPMGFYAPAQIVRDAAEHGVRVLPADVNLSQWDCTLEEIGEGRAVEGDSGRL 906

Query: 832  --DNRIYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                 +   L  I G+    A   I E  A+  +   ED  +  D  +     +E L  A
Sbjct: 907  DKHIALRLGLRQIDGLSEAVAAQLIAEREANGRY---EDVRALRDRARTGPAHVERLASA 963

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH----EKGTFSDKITLEKFS 944
             A      SR Q L    ++   A             +FA     ++G       L +  
Sbjct: 964  DAFGSMNLSRRQALWDARSLVGGAD----------LPLFAAAAARDEGAEKHATQLPQMP 1013

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
            +    V    + +        HP+   +  L + G     +  A    + + +A +V+ +
Sbjct: 1014 LSEEVV---ADYQTTRLSLKAHPMAFLRASLAERGFVRACDLRAKKFRSMVHVAGVVLIR 1070

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG  + ++T  +         +P
Sbjct: 1071 QRPGSAKG--VCFITLEDETGVINLVVWP 1097


>gi|116687208|ref|YP_840454.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
 gi|116652923|gb|ABK13561.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
          Length = 961

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/975 (25%), Positives = 423/975 (43%), Gaps = 60/975 (6%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           +       P++  L   S++S L GA     ++ +        IA+TD  +L   +    
Sbjct: 30  MATSPFSLPAYAELFCLSNFSFLHGASHAEELVKRANQLGYSGIAVTDECSLAGVVRAHV 89

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            A       +I            K+T    +P      ++LL    EGY  L EL++   
Sbjct: 90  AAKDLNFPLVI--------GSYFKLTQADSSP---ALDLILLAQNREGYGNLSELITLAR 138

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
           +    K    +    L +  T    +        I    F  + +  + ++    + F  
Sbjct: 139 IRSP-KGGYHLTSQDLLKPETTYAHLKGVPDCLAILIPRFPANPEELDAQVEWLIETFPG 197

Query: 181 RLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           R +V L  H R  D   E  V  +A  + +P+VA               D + A+     
Sbjct: 198 RAWVGLCLHQRAMDNVHEDVVEHVASGNGVPVVAVGQVTMHVRSRKPLQDTMTAIRVGKP 257

Query: 240 VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           V++         + +L++R  + +++ +   AL  T+ I  RC F L       P  +  
Sbjct: 258 VAECGYELTPNAEQHLRSRMRLANLYPE--SALRETIAILSRCRFSLGELRYEYPDELVP 315

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                       LR +   G   R   G         + +++++ EL +I  +K+  YFL
Sbjct: 316 PGF----TPTTYLRQETYIGAHRRFKNGI------PHNVQKQIEHELELITELKYEPYFL 365

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V D +++A+   I +  GRGS A S   Y L IT++DP R ++LFERF++ +R S PD 
Sbjct: 366 TVYDIVKFARSEGI-LCQGRGSAANSAVCYCLGITEVDPARGTMLFERFVSRERNSPPDV 424

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DF   +R+ V++Y+  KYG +R A      + +A+  LR+VG+A+ +    VDR+ K 
Sbjct: 425 DVDFEHQKREIVVQYIYRKYGRDRAAIAAAVSTYRARGVLREVGKAIGVDAQIVDRVAKT 484

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                     LQ  ++         +   +     ++ +L G  RH S H+ G VI    
Sbjct: 485 HHWFDGSSDLLQRFSESG----LDPSASIIHTWASLATQLCGFPRHLSQHSGGFVISRGK 540

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597
           LS+LVP+      D  V Q++   +E  GL+K D L L  L++++++LD ++ QRG   +
Sbjct: 541 LSRLVPIENAAMPDRSVIQWDKDDLESLGLLKVDVLALGMLSVIRRALDLVSLQRGEPFE 600

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           +  IP +D ETY +++   T+G+FQ+ES   +  L  ++P    D++  V++ RPGPI  
Sbjct: 601 MQDIPPEDPETYDMISKADTVGVFQIESRAQQPMLPRLKPKTFYDLVIEVAIVRPGPIQG 660

Query: 658 I--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
                Y  R+ G + +      ++  L  T GV I+QEQVMQ+A L +G+S  EAD LRR
Sbjct: 661 GAVHPYLRRRQGIDPVSYPSKDLETALSRTLGVPIFQEQVMQVAILAAGFSPGEADGLRR 720

Query: 716 AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           AM   K K  ++   +R +SG    G  +  A  IF  +  F DYGF +SHAA++A++ Y
Sbjct: 721 AMAAWKRKGGLEPYHDRLVSGMLMRGYDREFAEAIFAQIKGFGDYGFPESHAASFALLVY 780

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-- 832
            ++W+K H P  FL + +  +        +  QDAR+  + I+P  V     +  +    
Sbjct: 781 VSSWLKCHEPEAFLVSLLNSQPMGFYSPSQLIQDARRHGVTILPADVMVSNWESSLEYRE 840

Query: 833 ----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                 +   L+ ++G+    A  I  A A K F S  D   R    + +  VL      
Sbjct: 841 GAQPPAVRLGLSLLRGMRVEAAERIELARAVKAFSSTADLGKRAQLDRHDFHVL------ 894

Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
                   +R   L SL   ++ A W       + + + +      +             
Sbjct: 895 --------ARADALVSLAGGRRSALWQSVVAVPEKDLLASANMDDET-----PDLGCATE 941

Query: 949 SVRFENEQRVLGFYF 963
               +++ + +G   
Sbjct: 942 GDEIQSDYQSMGLTL 956


>gi|212635132|ref|YP_002311657.1| DNA polymerase III subunit alpha [Shewanella piezotolerans WP3]
 gi|212556616|gb|ACJ29070.1| DNA polymerase III alpha subunit [Shewanella piezotolerans WP3]
          Length = 1057

 Score =  752 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/1045 (23%), Positives = 456/1045 (43%), Gaps = 67/1045 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+Y+  +GA   + ++++ A     AIAITD  +    ++  + A    IQ +
Sbjct: 2    YAELHAISNYTFFKGASHPHELVEQAAELGYQAIAITDECSFAGIVKAHEAAKKCQIQLL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +  +                      VLL    +GY ++ +L++      + K   +
Sbjct: 62   VGTEFQLAEGI-----------------FVLLAMNRKGYGQISQLITTSRRRAE-KGEYQ 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL------LTFKKLFGDRLYV 184
            + LS LQ+     +++    S   I+       +Q+A  +        +  + F  R Y+
Sbjct: 104  LQLSELQQGLDNTILLWQPASLKSINSTLGELPTQIATYQADVLTVGQSLYRQFPQRCYL 163

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             ++R        + Q+  Q+A   ++P VA  +     ++  +  DVL  + + T ++Q 
Sbjct: 164  LMERSLVAGEALKIQLWTQIAKQLDMPCVAAGSVRMHCQQRQKLLDVLTCIRYGTELAQA 223

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                +   +  LK  + +   +    E +EN++ IA RC+F L+      P  +      
Sbjct: 224  GELLLANAETALKPTATLYKRYP--KEWIENSLLIAERCNFSLEELKYEYPSEVVPS--- 278

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             +      L  +   G   R      A          + + EL +I  M++  +FL + D
Sbjct: 279  -ELSASEYLAQEVYKGALRRFNHQVPA------SVTAQYEKELVLIKAMQYEYFFLTIYD 331

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +Q+AK   I +  GRGS A SV  Y L IT++DP + ++LFERF++ +R   PD D+DF
Sbjct: 332  IVQYAKSQQI-LHQGRGSAANSVVCYCLGITEVDPTKVNMLFERFVSKERNEPPDIDVDF 390

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+E+I+Y+  KYG ER A   T  S + K+AL DVG+AL +    +D +   I   
Sbjct: 391  EHERREEIIQYIYGKYGRERAALAATVISYRFKSALADVGKALGIDKQYLDHMQHSIDRR 450

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                  L  + + S      +       L  + Q + G  RH S H  G +I   PLS+L
Sbjct: 451  DTEVDWLTQLQEKSLLPREGMG----KYLFPLVQSILGFPRHLSQHVGGFIISSGPLSEL 506

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+     +D  V Q++   +E  GL+K D L L  LT ++K  + ++    +  +  + 
Sbjct: 507  VPVENASMADRTVIQWDKDDLESLGLLKVDVLALGMLTAIRKCFELISTPEQRFTMEQVK 566

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
            ++    Y +L    ++G+FQ+ES      L  ++P C  D++  +++ RPGPI  D +  
Sbjct: 567  WEQAAVYQMLQRGDSIGVFQVESRAQTSMLPRLKPRCYYDLVVQIAIVRPGPIQGDMVHP 626

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R++G EK+      ++ +L  T GV I+QEQV+Q+A + +G+S  EAD LRRAM   
Sbjct: 627  YLKRRDGLEKVTYPSKEVESVLSRTMGVPIFQEQVIQLAMVAAGFSGGEADKLRRAMASW 686

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K   E+ + +++ + G    G S   +  I+  +  F +YGF +SH+A++A+++Y +A++
Sbjct: 687  KKTGELQQFEDKLLKGMLSRGYSAEFSKQIYRQIRGFGEYGFPESHSASFALLAYVSAYL 746

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNR 834
            K H+P  F  + +  +        +  QD ++  + ++    N       +         
Sbjct: 747  KFHHPAAFCCSLLNSQPMGFYSPSQLIQDVQRHGVVVLAVCANRSQWQHTLVTIADNRIA 806

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I      +KG+       +++   ++ F  ++    ++    + R  LE+L  A A    
Sbjct: 807  IRLGFRLVKGLNRQEIEKLIKQRPEQGFTHID----QIYYLGIARHELETLASADAFSQI 862

Query: 895  GYSRMQLLQSLDN------IQKYAQWVEKN-RTNKHENIFAHEKGTFSDKITLEKFSVEN 947
               R Q+   L        +         N +      + A         +TL   S+  
Sbjct: 863  AGHRHQVRWQLSACQPSLPLFDDVLEAGMNCKQEGERVLPASGGLNSVADVTLPSPSI-- 920

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             +   + +    G     HP+ + +           E+      G  + +A +VV +Q+ 
Sbjct: 921  -AESMQADYAYTGVTLGQHPMSLLREQSCLHHCLTAEQLDECRSGQVVTVAGLVVGRQRP 979

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T  G  + ++T  +         +
Sbjct: 980  GTASG--VTFITLEDETGNVNLVVW 1002


>gi|87199556|ref|YP_496813.1| DNA polymerase III, alpha subunit [Novosphingobium aromaticivorans
            DSM 12444]
 gi|87135237|gb|ABD25979.1| error-prone DNA polymerase, DnaE-like protein [Novosphingobium
            aromaticivorans DSM 12444]
          Length = 1078

 Score =  752 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/1048 (24%), Positives = 448/1048 (42%), Gaps = 79/1048 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  F  L   ++YS L GA     ++ +        + + D N +   +        
Sbjct: 1    MTGSQPFAELVSATNYSFLRGASHPAQMVARAHQLGMAGLGVADRNTVAGVVRAHVGWRE 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             G            +    ++    +  F    P +V   ST  G++RL  L++      
Sbjct: 61   VG-----------GLASGFRLAVGARLVFADGTPDVVAYPSTLRGWRRLTRLLTLGNRRA 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            Q K    + LS L +   + L++ TG                   + L   ++     ++
Sbjct: 110  Q-KGDCTLYLSDLLDHADDLLLIATGHD----------------RRVLEKLREARPGAVW 152

Query: 184  VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +   RG  D  R +Q   L     +PL+AT ++L+   +    HDVL  +     +++
Sbjct: 153  LAVTMQRGGTDARRLAQAQALGAACGVPLLATCDALYDHPDARPLHDVLTCIREGVTIAE 212

Query: 243  KD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
               R     + +LK  +EM  +F   PEA+  +VEI  R +F L       P     E  
Sbjct: 213  AGQRLLANAERHLKLPAEMARLFRSHPEAVTASVEILSRITFTLDDLRYEYPHEPVPEG- 271

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                + +  L +    G E     G        ++Y+  L  E  +I +  ++ YFL V 
Sbjct: 272  ---WQPQAWLEHLVQQGGEALFPDGL------PENYQAVLRQEFCLIRKKNYAYYFLTVH 322

Query: 362  DFIQWAKKNNIPV-GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            D ++ A+  + P+   GRGS A S+  Y L IT IDP+R  LLF RFL+  R   PD D+
Sbjct: 323  DIVRHARSLDPPILCQGRGSAANSLVCYFLGITPIDPVREQLLFSRFLSEMRDEPPDIDV 382

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+E+++Y+  +YG ER     T    + ++A+R+VG+ L +      RL   I 
Sbjct: 383  DFEHERREEIMQYIYARYGRERAGIAATVIHYRPRSAIREVGKVLGLTEDVTARLASTIW 442

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +    V    +A+        +A+P V RL  +  +L    RH S H  G V+ +  L 
Sbjct: 443  GNWGKDVPEAYVAE----AGLDIANPVVARLKALVDQLLTFPRHLSQHVGGFVLTESRLD 498

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLS 599
            +LVP++     D    +++   I+  GL+K D L L  LT ++KS D L +  V    L+
Sbjct: 499  ELVPIHNAAMPDRTFIEWDKDDIDALGLMKVDILALGMLTAIRKSFDLLRRHDVADLTLA 558

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P DD  TY +L    ++G FQ+ES      L  M+PDC+ D++  V++ RPGPI   +
Sbjct: 559  SVPHDDRATYAMLKRGDSIGTFQVESRAQIAMLPRMKPDCLYDLVIQVAIVRPGPIQGGM 618

Query: 660  --VYNNRKNGKEKIVSIH-------PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
               Y  R+NG+E  V            +  +L +T GV ++QEQ M++A + + ++ ++A
Sbjct: 619  VHPYLRRRNGEEAAVFPSPAPPHDPHELHKVLGKTLGVPLFQEQAMKLAIVAARFTPAQA 678

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            D LRRAM   +    +   ++  I G    G  +  A   +E +  F +YGF +SHA A+
Sbjct: 679  DGLRRAMATFRHHGTVHNYEDLLIDGMVARGYEREFAERCYEQIKGFGEYGFPESHAQAF 738

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
              ++Y ++W+K H+P  F  A +  +        +  +DA+Q  +++    VN    D  
Sbjct: 739  GWLAYVSSWLKCHHPAAFTCALLNSQPMGFYAPAQLVRDAQQHGVEVRAVDVNASHWDCT 798

Query: 830  V-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +     G   +    + I G     A  + +A  D  F S+ED   R +   +  + L  
Sbjct: 799  LAGGKGGPFALQLGFSRIDGFRRAWAEALAQARHDGMFTSIEDVARRAE---MPPQALRK 855

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  A A      SR   L  +           +        +FA        +    + S
Sbjct: 856  LADADAFGSLASSRRDALWDV-----------RRTPPTQLPLFAFANAPELGQEPDARLS 904

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                      + +       GHP+   +  L + G+    E+     G  +R+A +V+++
Sbjct: 905  AMPLPEEVVADYQTTRLSLKGHPMQFLRDALARKGVLSCAEANTAADGRKVRVAGVVLTR 964

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            Q+    KG+ + ++T  +      A  +
Sbjct: 965  QRPG--KGNAV-FITIEDETGVVNALLW 989


>gi|298492518|ref|YP_003722695.1| DNA polymerase III subunit alpha ['Nostoc azollae' 0708]
 gi|298234436|gb|ADI65572.1| DNA polymerase III, alpha subunit ['Nostoc azollae' 0708]
          Length = 877

 Score =  752 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/811 (37%), Positives = 461/811 (56%), Gaps = 62/811 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+       AIA+TD   ++ A+E  +   +  I+P
Sbjct: 2   SFVPLHIHSDYSLLDGASQLPELVDQAITLGMKAIALTDHGVMYGAVELIKVCRSKNIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ I   D  K   + K         V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62  IIGNEMYIINGDIEKQERRPK------YHQVVLAKNTKGYRNLVKLTTISHLQGVQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I  + L+E   EGLI+ +    G I +A        A K    +K++FG+  Y+ 
Sbjct: 116 FSRPCINKNSLKEY-KEGLIVTSACLGGEIPQAILSKRPDAARKVAKWYKEVFGEDFYLE 174

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR    ++V++A    +  +ATN+S ++S  D EAHD L+ +    ++S+  
Sbjct: 175 IQDHGSQEDRIVNVEIVKIARELGIKFIATNDSHYISCFDVEAHDALLCIQTGQLISEDK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           R R +   YLK+  EM  +F D      + EA+  T E+  +      +  P +P     
Sbjct: 235 RMRYSGTEYLKSAQEMQQLFRDHLPDYVIAEAIATTEEVGDKIEPYHIMDEPKIPTPPIP 294

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                    +      A  GL  RL +   ++    Q Y++RL++EL ++ RM FS YFL
Sbjct: 295 SG----HTPDTYAEEIAWQGLLERLNR--KSRSEVDQIYKERLEYELKMLQRMGFSTYFL 348

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           +V D+I++A+ NNIPVGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 349 VVWDYIKFARDNNIPVGPGRGSAAGSLVAYAMRITNIDPVHHGLLFERFLNPERKSMPDI 408

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D DFC ++RD+VI YV NKYG +RVAQIITF  L +KA L+DV R L +PY + D++ K+
Sbjct: 409 DTDFCIEKRDQVIEYVTNKYGADRVAQIITFNRLTSKAVLKDVARVLDIPYGEADKMAKM 468

Query: 479 IPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           IP     P  L+ +  +      F+E    D  +   L+++ ++EG  +    HAAG+VI
Sbjct: 469 IPVVRGKPTKLKVMVSNETPAPEFKEKYDHDAKIRHWLDMAMRIEGTNKTFGVHAAGVVI 528

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----- 589
              PL ++VP+ R+      +TQ+ M+ +E  GL+K DFLGL+ LTL+QK++D +     
Sbjct: 529 SAEPLDEIVPLQRN-NDGSVITQYFMEDLESLGLLKMDFLGLRNLTLIQKTIDLIQETNG 587

Query: 590 ----------AQRGVKVDLS-----LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
                      +R  +  L+      +P +  + Y LL +    G+FQLESSGM+Q +  
Sbjct: 588 YKIDPDEITGQERKAQHILAKGQHSTLPKEVQKAYSLLESGDLEGVFQLESSGMKQIVRD 647

Query: 635 MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           ++P  IEDI ++++LYRPGP+D   I  + NRK+ +E+I     +++P+L ET G+++YQ
Sbjct: 648 LKPSNIEDISSILALYRPGPLDAGLIPKFINRKHRREEIEYETGILEPILNETYGIMVYQ 707

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQ+M+IAQ ++GYSL +AD+LRRAMGKK   EM KQ+E+FI GA KNG+ K +A  +F  
Sbjct: 708 EQIMKIAQDMAGYSLGQADLLRRAMGKKKVSEMQKQEEKFIDGAMKNGVKKQVAEKLFAD 767

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           + KFA+Y            +SY+T  +   Y
Sbjct: 768 MLKFAEYC-----------LSYKTEVLTVEY 787


>gi|16127441|ref|NP_422005.1| DNA polymerase III subunit alpha [Caulobacter crescentus CB15]
 gi|221236252|ref|YP_002518689.1| DNA polymerase III subunit alpha [Caulobacter crescentus NA1000]
 gi|68565607|sp|Q9A3J3|DNAE2_CAUCR RecName: Full=Error-prone DNA polymerase
 gi|239977206|sp|B8H427|DNAE2_CAUCN RecName: Full=Error-prone DNA polymerase
 gi|13424891|gb|AAK25173.1| DNA polymerase III, alpha subunit, putative [Caulobacter crescentus
            CB15]
 gi|220965425|gb|ACL96781.1| DNA polymerase III alpha subunit [Caulobacter crescentus NA1000]
          Length = 1083

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/1069 (24%), Positives = 443/1069 (41%), Gaps = 103/1069 (9%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            + P +  LQ  +++S L GA     +     A    AI I D N+L   +     A    
Sbjct: 2    RPPVYAELQATTNFSFLRGASHAEELALTAEALGLTAIGIVDRNSLAGVVRAWTAAKRRS 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+ + GC+LD                    PS++   +  E + RL  L++   L  + K
Sbjct: 62   IRVLTGCRLDF---------------MDGAPSLLCYPTDREAFGRLTRLLTIGQLRAE-K 105

Query: 127  QSVRICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                +      +   G  GLI         +      +S    E+ L         R ++
Sbjct: 106  GECHLTWRDFLDHSEGQLGLI---------VPPRVLDDSF---EQHLTRMAGDLRGRSWL 153

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
               R +   D  R +++  L  T   P+VATN+ L+   E     DV+  V     + + 
Sbjct: 154  AASRAYAARDLQRLARLESLGRTSGAPIVATNDVLYHGPERRPLQDVISCVREHCAIQEA 213

Query: 244  D-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              R     + ++K+  EM  +F   P A+E TVEI  R  F L+      P         
Sbjct: 214  GFRLEANAERHIKSPEEMARLFDRWPRAVERTVEIVERIGFDLKDIREQYPDEPVPPG-- 271

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              K     L +    G   R   G   K         ++  EL +I +M +  YF+ V D
Sbjct: 272  --KTAMQHLTDLTWKGAAWRYPNGVSPK------VTAQIQEELRLIEKMDYPNYFITVHD 323

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             ++ A+   I +  GRGS A S   + L +T IDP    LLF RF++ +R   PD D+DF
Sbjct: 324  IVREARSMGI-LCQGRGSAANSSVCFCLGVTAIDPTEHRLLFTRFISENRGEPPDIDVDF 382

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              DRR+EV++YV  +YG    A   T    + ++A+RDVG+AL +       L   +   
Sbjct: 383  EHDRREEVMQYVFQRYGRAYAAICGTVIHYRPRSAIRDVGKALGLTEDVTSLLAGTVWGS 442

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +      D  R        P + R + ++  L G  RH S H  G V+  R L + 
Sbjct: 443  WGDGLP----EDHLRNAGLDPKAPEIARAVGLANDLIGFPRHLSQHVGGFVLTKRRLDET 498

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV---DLS 599
            VP+ +    D    +++   I+  GL+K D L L  L  +Q+++  L +   +    DL+
Sbjct: 499  VPIGKAAMKDRTFIEWDKDDIDSLGLMKVDILALGMLHAIQRAMTMLREDHGQDWLKDLA 558

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DN 657
             IP +    Y +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI  D 
Sbjct: 559  DIPKEVPGVYDMLCAADSVGVFQVESRAQMSMLPRLRPREFYDLVIQVAIVRPGPIQGDM 618

Query: 658  IVVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            +  Y  R+N +E +    P         +  +L +T GV ++QEQ M +A   + ++  E
Sbjct: 619  VHPYLKRRNKEEPVDWPKPSPEHGPPDELQEILGKTFGVPLFQEQAMSLAIEAAKFTPDE 678

Query: 710  ADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD LR+AM   +     D  + +FI G    G  +  A   F+ +  F+ YGF +SHAA+
Sbjct: 679  ADGLRKAMATFRNLGSPDAYRNKFIEGMVGRGYERAFAERCFKQIEGFSHYGFPESHAAS 738

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +A + Y +AW+K  +P  F AA +  +     +  +  +DAR+  ++++PP + T   D 
Sbjct: 739  FAKLVYVSAWIKWAWPDVFCAALINAQPMGFYQPAQLVRDAREHGVEVLPPDILTSDWDC 798

Query: 829  KVG------------------------DNRIYYSLAAIKGVGTT-TARHIMEASADKPFD 863
             +                            +      IKG+  T     +++A  +    
Sbjct: 799  TLAPISTGFRPPRVRHDKVACQETRPRWKAVRLGFRQIKGLRETLDIPPLLKARGEGA-R 857

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            +  +F        + ++ LE L  A A    G SR + L ++  +        +++    
Sbjct: 858  TPAEFAQ----GGVPQKALELLAEADAFASVGLSRREALWAVKGL------KGEHKAPVQ 907

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
              + A     F +++ L   +    +     + R        HP+  Y+ +L   G+   
Sbjct: 908  APLLAGLP-LFEERVALPAMAA---TQEVAEDYRTTSLSLKAHPIGFYRSMLAARGVVPA 963

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            E  ++   G  + +A +V+ +Q+  T KG  + +VT  +      A  +
Sbjct: 964  ERLLSLKDGARVSVAGLVLIRQRPGTAKG--VVFVTLEDETGVANAVVW 1010


>gi|170748432|ref|YP_001754692.1| DNA polymerase III, alpha subunit [Methylobacterium radiotolerans JCM
            2831]
 gi|170654954|gb|ACB24009.1| DNA polymerase III, alpha subunit [Methylobacterium radiotolerans JCM
            2831]
          Length = 1096

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/1059 (24%), Positives = 449/1059 (42%), Gaps = 81/1059 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L V +++S L GA      + + A+    AI I D N +              ++ 
Sbjct: 7    PYAELAVTTNFSFLHGAAHPQEFVAQAASYGLEAIGIADRNTVAGV-----------VRA 55

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
                +        +++    +         V      E + RL  L++      +     
Sbjct: 56   HAAARALEPQGTAIRILPGVRLVTEEGFEAVTYPMDREAWGRLCRLLTLGNRRVRKGDCR 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
                  L+    +  I +      P        +   A             R ++     
Sbjct: 116  FAFAEMLEASEGQMFIAMPPARRLPEGFRARLEALAAAA----------PGRTFLGASHT 165

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
            R G +R R   + +L      P+VA +++L+   +     DV+  +     +     R  
Sbjct: 166  RRGDERRRLGLLAELGAASGAPMVAVSDALYHHPDRRPLQDVVTCIREGCRIEDAGYRLE 225

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + +LK   EM  +F+D PEAL  TVEIA+ C+F L       P           +  
Sbjct: 226  ANAERHLKPPPEMARLFADHPEALVRTVEIAQACAFDLAQLRYEYPDEPVPPG----RTP 281

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L  K       R A      G         L  EL +IA+M ++ YFL + D +++A
Sbjct: 282  QEYLEEKTWERARWRYA------GEVPDAVAATLREELRLIAKMDYARYFLTLFDVVEFA 335

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A S   + L IT +DP +  LLF RF++ +R   PD D+DF  +RR
Sbjct: 336  RGRGI-LCQGRGSAANSAVCFCLGITAVDPSKHRLLFARFISENRGEPPDIDVDFEHERR 394

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+++  +YG ER A   T    + + A+R+VG+ L +       +   +       +
Sbjct: 395  EEVIQHLYARYGRERAALCATVIHYRPRMAIREVGKVLGLTEDVTAAIADTVWGSWGTGM 454

Query: 488  SLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                   D   REA L   +P++ + L+++ +L G  RH S H  G V+    L + VP+
Sbjct: 455  P------DRHVREAGLDPENPAIRQALDLAHQLIGFPRHLSQHVGGFVLTRGRLDETVPV 508

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--VKVDLSLIPF 603
                 +D    +++   I+  GL+K D L L  LT L++ LDFL +    +   L+ +P 
Sbjct: 509  GNGAMADRTFIEWDKDDIDAIGLMKVDVLALGMLTCLKRGLDFLERDHGTLYATLADLPQ 568

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            DD  TY +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y
Sbjct: 569  DDPATYAMLAKADSVGVFQVESRAQMSMLPRLKPKEFYDLVVQVAIVRPGPIQGDMVHPY 628

Query: 662  NNRKNGKEKIVS--IHP------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              R++G + +     HP       +  +L++T GV ++QE  MQIA   +G++ +EAD L
Sbjct: 629  LRRRSGIDPVEYPAPHPDHGPADELKEVLQKTYGVPLFQEHAMQIAITAAGFTPAEADGL 688

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM   +    +    ++F+ G ++ G  K  A   F  +  F+ YGF +SHAA++A++
Sbjct: 689  RRAMATFRHVGSIGGFADKFVGGMTRRGYPKDFAERCFAQIRGFSTYGFPESHAASFALL 748

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AWMK  +P  FLAA +  +     +  +  +DAR   +++    VN    D  +  
Sbjct: 749  VYASAWMKCRHPDVFLAAILNAQPMGFYQPAQLVRDARAHGVEVRGVCVNASDWDCTLEP 808

Query: 833  ------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                  + +   L A++G+     R ++   A+  + S+E   +   S  L R  LE L 
Sbjct: 809  GGNPALHAVRIGLRAVRGLPEAAMRRLVRLRANG-YASIEGLQA---SLALPRNALERLA 864

Query: 887  FAGALDCFGYSRMQLLQSLD-----NIQKYAQWVEKNRT----NKHENIFA--HEKGTFS 935
             A A    G  R   L  +      + +K A+     R     +    +FA   + G F 
Sbjct: 865  EADAFRSLGLDRRAALWMVRTLEGTSARKAARADPSERRAHLLDAPLPLFAWHSDDGLFR 924

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIRGN 993
             +  +        S     +    G    GHP+  ++  L ++G       +  A  +G 
Sbjct: 925  HEPAV-DLPALAPSEAVAEDYSATGLSLQGHPVAFFRGRLARIGAIPARAHLDPALPQGA 983

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +A +V+ +Q+  T KG  + ++T  +         +
Sbjct: 984  RVTVAGLVLIRQRPGTAKG--VVFLTLEDETGIANVIVW 1020


>gi|90020675|ref|YP_526502.1| pantoate-beta-alanine ligase [Saccharophagus degradans 2-40]
 gi|123396461|sp|Q21LY9|DNAE2_SACD2 RecName: Full=Error-prone DNA polymerase
 gi|89950275|gb|ABD80290.1| DNA polymerase III, alpha subunit [Saccharophagus degradans 2-40]
          Length = 1029

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/1038 (25%), Positives = 458/1038 (44%), Gaps = 82/1038 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQ  ++YS L+ A     ++++       A+AITD  +L   ++    A    ++ +
Sbjct: 3    YTQLQTLTNYSFLKSASHPQELVEEAKILGYHALAITDECSLAGIVKAHVAAKELNLKLL 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G   ++                     I+ +    + Y  L   +S        K    
Sbjct: 63   VGSYFELTNG----------------FKIIAIAPNRQAYAELSGFISLARRR-ASKGEYE 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              LS L+    + LI         I   +F N     +  + T    F  RL++ +    
Sbjct: 106  AHLSDLRFRLQQCLI---------IWLPYFNNHISDVD--VTTLATAFKQRLWIGVSHTL 154

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRV 248
               ++   S + +LA    +PLVA+  +   ++      D+L A+  +T + Q   R   
Sbjct: 155  IAAEQRLFSHLNKLANALHVPLVASGLTYMHNKNCKPLLDILTAIRENTPIQQLGTRLHS 214

Query: 249  TPDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              +  LK   E+  ++   PEA ++ T  IA+ C+F L       P+ +           
Sbjct: 215  NAEVNLKPLHELNQLY---PEALIQQTQVIAQLCNFSLDELRYQYPKELVPSN----TTP 267

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+     G   R  QG        +  ++ +  EL +I  M++  YFL V D + +A
Sbjct: 268  IAHLKKLVKEGEAKRWPQGT------PEHAQKIIAMELGLIEEMQYEYYFLTVHDIVHFA 321

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  NI +  GRGS A SV  Y L IT+I P + ++LFERF++ +R   PD D+DF   RR
Sbjct: 322  RSKNI-LCQGRGSAANSVVCYCLFITEIAPGQINVLFERFISKERNEPPDIDVDFEHQRR 380

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG ER A   T  + ++++A+RDVG+A+ +    V +L K +        
Sbjct: 381  EEVIQYIYQKYGRERAALAATVITYRSRSAIRDVGKAMGLEAGLVGQLAKSLAWWDRTGD 440

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             ++ +     F        ++     + Q++ G  RH S H  G +I    +S LVP+  
Sbjct: 441  LIKRMES---FGLNPETQKTMQHFFALVQQILGFPRHLSQHVGGFIITQDKVSDLVPLEN 497

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  + Q++   IE  GL+K D L L  LT L+KSL+ ++Q       L+ IP +D 
Sbjct: 498  ASMPDRTIIQWDKYDIEAMGLLKVDVLALGMLTALRKSLETVSQYDAAVYSLATIPREDP 557

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNR 664
             TY +L+   ++G+FQ+ES      L  ++P C  D++  +++ RPGPI  D +  Y  R
Sbjct: 558  ATYAMLSKGDSIGVFQVESRAQMSMLPRLRPKCFYDLVIEIAIVRPGPIQGDMVHPYLRR 617

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723
            ++G E++   +  I  +L+ T G+ I+QEQ +++A + + +S  EAD LRRAM    K  
Sbjct: 618  RDGIEEVHYQNDKIKSVLEPTLGIPIFQEQAIRLAMVAADFSGGEADQLRRAMASWGKNG 677

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             + K +++FI G   NG     A  +FE +  F  YGF +SH+A++A++ Y ++W+K H+
Sbjct: 678  SLLKFEDKFIQGMLNNGYPLDFAHRLFEQIKGFGGYGFPESHSASFALLCYASSWLKCHH 737

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------DNR 834
            P  F  A +  +        +  QDAR+  + ++P  VN    +  V           N 
Sbjct: 738  PAAFYCALLNSQPMGFYSASQLIQDARRHKVVVLPVEVNASGYESHVVLTNHNTSAPPNI 797

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I   L  IKG+   TA  I+ A  DKPF +L++   R      + ++L S   A AL   
Sbjct: 798  IQLGLHMIKGLSILTAERIVLAKGDKPFTTLKELSLRAQLSSADLQLLAS---ADALHKL 854

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R         +              H  +    +    D +     S+E +    + 
Sbjct: 855  TGNRHNSRWQAAALM------------PHSPLLDGAE-LEEDALNTPAPSIEKN---IQT 898

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +    G     HP+ + +        K   E  +   G   ++A +V  +Q+  T KG+ 
Sbjct: 899  DFNSTGLSLRLHPMALLRAQQPFNRCKKQSELASIHNGGFAQVAGLVTGRQRPGTAKGTL 958

Query: 1015 IGWVTFSEPAKEYEANFF 1032
              ++T  +         +
Sbjct: 959  --FLTLEDETGNINIVVW 974


>gi|293192907|ref|ZP_06609751.1| error-prone DNA polymerase [Actinomyces odontolyticus F0309]
 gi|292819963|gb|EFF78962.1| error-prone DNA polymerase [Actinomyces odontolyticus F0309]
          Length = 1094

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/1093 (27%), Positives = 479/1093 (43%), Gaps = 118/1093 (10%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     +  L  HS+++ L+G      ++++ A     A+AI D + ++S ++ +  A  
Sbjct: 1    MTTERRYAELHAHSAFTFLDGTDEPARMVEEAARLGLDALAILDVDGMYSTVQTTMAART 60

Query: 65   AGIQPIIGCQLDIDMQ------DNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQRLIELV 116
            AG+  + G +L +                 G  P    P   + ++ ++  GY  L+  +
Sbjct: 61   AGLPIVYGAELTLAPDALRGIVPGSSAPGWGLAPGAEDPGMRLPIVAASPTGYAHLVGAM 120

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S   L + G+++ R  L  L E G E L++LTGG  GP+ RA     +  A + L     
Sbjct: 121  SARALSEPGQRNPRHDLVNLSEAGGE-LVVLTGGRRGPLMRALRAGGTAPARRVLDGLVD 179

Query: 177  LFG-DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             FG D++ V  Q  RG +      + +LA      LVAT+ +   S       D+L A  
Sbjct: 180  AFGCDQVLVEWQAARGDEDEVGDVLAELARASGTRLVATSGARMSSPSKQALGDILTATR 239

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
              + +++ +        +L++ +EM  +    P+AL+N  E+A  C+F L++ AP LPR 
Sbjct: 240  LGSSLNEAEAHLGAHRSFLRSPAEMARLHGAHPQALDNACEVAAACAFDLRLVAPRLPRT 299

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
               +        ++ L +    G  VR          H     + ++ EL VI R+ F+G
Sbjct: 300  QVPDG----HTPDSWLAHCTYEGASVRYGS-----RAHHPRAWETIEHELGVIERLGFAG 350

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV D + +  +N I +  GRGS A S   Y L IT +D +R +LLFERFL+  R   
Sbjct: 351  YFLIVKDIVDFCARNGI-LCQGRGSAANSAVCYCLGITAVDAVRHNLLFERFLSDARSGP 409

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+D    RR+EVI+YV + +G +R AQ+    + + ++A+RDV RAL  P       
Sbjct: 410  PDIDVDIEACRREEVIQYVYDTFGRDRAAQVANVITYRPRSAIRDVARALGYPAGTATAW 469

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             +     P                      P V    + +Q L  L RH   H+ G+V+ 
Sbjct: 470  SQGRGEVP----------------------PLVG---DAAQALARLPRHMGIHSGGMVLT 504

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA----- 590
            D+P+S++ P+         V Q++ +    AGL+KFD L L  LT L+ + D L      
Sbjct: 505  DQPVSRICPVGWAAMPGRTVLQWDKEDCADAGLVKFDLLSLGMLTALRVAFDELRAGGAR 564

Query: 591  ------------------QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
                              + G  + L  +P +D   Y LL    T+G+FQ+ES      L
Sbjct: 565  AGEASNQLRGWAPRVVEGREGQPLGLHTLPEEDPRVYDLLCAADTVGVFQVESRAQMNTL 624

Query: 633  EGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
              ++P C  DI+  V+L RPGPI   ++  Y  R++G+E++  +HPL++P L++T GV +
Sbjct: 625  PRLKPRCFYDIVVEVALIRPGPIQGRSVNPYLRRRSGREEVTYLHPLLEPALRQTLGVPL 684

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +QEQ+M+IA   +G S + AD LRRAM  K+  E M+  K   ++G  + GI       I
Sbjct: 685  FQEQLMRIATDAAGLSGARADQLRRAMGAKRSPERMEALKGDLMAGMEERGIDAPTRERI 744

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            FE L  FAD+GF +SH+ ++A I Y ++W+K H P  F AA +  +           QDA
Sbjct: 745  FEQLKGFADFGFPESHSFSFAHIVYASSWLKVHAPEHFYAAILASQPMGFYSPATLVQDA 804

Query: 810  RQFNIQIMPPSVNTPCVDFKVGD-------------------------------NRIYYS 838
            R+  ++++ PSVN   VD  V                                   +   
Sbjct: 805  RRHGVRVVGPSVNDSLVDASVQRVGDDEAGESYNPGRPEALPSRGTVALDVDRELAVRIG 864

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L+ ++G+G   A  I+EA     F S  D   R          +E L  AGAL+C G  R
Sbjct: 865  LSQVRGLG-AVAERIVEARRQGAFTSQADLARRAHVSA---SAMEKLAMAGALECLGVGR 920

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
                   +         +          F       +    L   S    + R  ++   
Sbjct: 921  R------EGAWAAGALAQPQARAGQWQPFLPGTEVGARVPELPSLSE---AERMRSDVAS 971

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             G     HP    +  L    +    E    + G  I +A +V  +Q+  T  G  I ++
Sbjct: 972  TGLTPGRHPFSYVRGSLPA-SVLRAGELGQHLAGRIIDIAGVVTHRQRPHT--GGGITFL 1028

Query: 1019 TFSEPAKEYEANF 1031
            +  +       + 
Sbjct: 1029 SLEDETGFVNVSV 1041


>gi|56477171|ref|YP_158760.1| hypothetical protein ebA3077 [Aromatoleum aromaticum EbN1]
 gi|71151812|sp|Q5P4A4|DNAE2_AZOSE RecName: Full=Error-prone DNA polymerase
 gi|56313214|emb|CAI07859.1| similar to DNA polymerase III alpha chain [Aromatoleum aromaticum
            EbN1]
          Length = 1070

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/1057 (25%), Positives = 440/1057 (41%), Gaps = 94/1057 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   +++S   GA     ++ + A     A+AITD  +L   +   Q+         
Sbjct: 16   YAELHCLTNFSFQRGASHPEELVARAAEAGYTALAITDECSLAGVVRAHQQLRR------ 69

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
                    +   LK+    +        +VLL +    Y RL  L++        K   +
Sbjct: 70   --------LARPLKLLIGSELRLVDGLRVVLLATDRAAYGRLARLITIGRRA-ATKGRYQ 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +  + L          + G  +  +        +           + F D  ++ ++   
Sbjct: 121  LTCADLDRG-------IPGCLALVVPPDDRILDAAALVADARWVGERFPDAAWLAVELAC 173

Query: 191  GYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
            G D   R   ++ +A    LP VA   +L          DVL A+     +++  R    
Sbjct: 174  GPDDGRRLEALLAIASAAGLPPVAATGALMHDPSRRALADVLAALRLRVTIAEAGRALAP 233

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +  L  R+ +   +    E L  T+ I  RC F L       P  +  + +       
Sbjct: 234  NAERALHERAVLARRYP--AELLAETLRIVARCHFRLDELRYEYPAELVPDGE----TPA 287

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR     GL  R   G           R +++ EL +IA + F  YFL V D +++A+
Sbjct: 288  SWLRRLVEDGLRWR--HGRPQDDLAPPKVRAQVEHELALIAELGFEAYFLTVEDLVRFAR 345

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I +  GRGS A SV  +AL IT++DP    +L ERF++ +R   PD D+DF  +RR+
Sbjct: 346  GRGI-LCQGRGSAANSVICWALGITEVDPELGIMLVERFISKERDEPPDIDVDFEHERRE 404

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YV  KYG ER A   T    +A++ALRDVGRAL +P  Q++RL +      A  + 
Sbjct: 405  EVIQYVYRKYGRERAALAATVIRYRARSALRDVGRALGLPPGQLERLARDRFWFDAGRIR 464

Query: 489  LQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                    R REA    A P V RL  +++ L G  RH S H  G VI    L +LVP+ 
Sbjct: 465  ------PERLREAGFDPASPGVQRLATLTEALVGFPRHLSQHVGGFVIARGRLDELVPVE 518

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                 +  V Q++   ++  GL+K D L L  L+ L++SL  +   RG    L+ IP + 
Sbjct: 519  NAAMPERTVIQWDKDDLDALGLLKIDVLALGMLSALRRSLALVSTWRGRPFTLADIPREA 578

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--- 662
             E Y +L+   ++G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    
Sbjct: 579  PEVYRMLSEADSIGVFQIESRAQMTMLPRLKPARFYDLVVQVAIVRPGPIQGGMVHPYLQ 638

Query: 663  --NRKNGKEKIVSIHP----------------LIDPMLKETQGVIIYQEQVMQIAQLLSG 704
               R    E +    P                 +  +L+ T GV I+QEQVMQ+A + +G
Sbjct: 639  ARARIERDEPVSYPQPHCPDADADGTCVPRPDDVRRVLERTLGVPIFQEQVMQLAVVAAG 698

Query: 705  YSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            ++  EAD LRRAMG  +   E+++ + + ++G +  G     A  + + +  F  YGF +
Sbjct: 699  FTPGEADQLRRAMGAFRRHGELERYRAKLLAGMAARGYRAEFAERLCDQIEGFGSYGFPE 758

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAA++A++ Y +AW+K   P  FL   +  +        +  QDAR+  + ++   V  
Sbjct: 759  SHAASFALLVYCSAWLKCCEPAAFLCGLLNSQPMGFYAPSQLIQDARRHGVVVLGAEVTA 818

Query: 824  PCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
               D  +             +   L  +KG G   A  I+ A  ++PF +++        
Sbjct: 819  SDWDCTLEALPDASPGAAPAVRLGLQLVKGFGREAAMRIVAARTERPFPNVD---ELALR 875

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
             +L+   L+ L  AGAL+     R Q L            +   R  +            
Sbjct: 876  ARLDAAALKRLAEAGALEPLAGHRRQALWQAAAGHAPEGVLRGARIAE------------ 923

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
                   + +  + +     +   LGF    HPL + +  L  +      E         
Sbjct: 924  ----PRAELAAPSEAQELVADYARLGFTLGRHPLALLRAKLTTLRFVTAAEIRDYPDRKL 979

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             R+A +V  +Q+  T KG+   ++T  +         
Sbjct: 980  ARIAGLVTCRQRPGTAKGTL--FLTVEDETGLANVIV 1014


>gi|327191253|gb|EGE58296.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CNPAF512]
          Length = 1152

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/1074 (23%), Positives = 457/1074 (42%), Gaps = 77/1074 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-- 62
            ++   +F  +   +++S LEGA S   ++ + A  +   + I D N++   +    +A  
Sbjct: 1    MKGERAFFEIGARTNFSFLEGASSPEEMVLQAAHLRLGGLGIADRNSVAGVVRAHAQAEQ 60

Query: 63   -------CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIE 114
                     A +           +   +++    +  F    P I+       G+  L  
Sbjct: 61   IEERYKNRDAILAEAEKTGKKERIFHPIRIQPGARLVFSDDTPDILAYPCNRRGWANLCR 120

Query: 115  LVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            L+S   L ++  K S  +  + L E G E ++ L    +    +A     + + +     
Sbjct: 121  LLSAGNLKEEAVKGSCILTEAELMEWGDEMMLALVADRTLVESQA---GQTALEDYLEQF 177

Query: 174  FKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             ++       V    + G DR   + +  LA  + +PL+ATN  L+   E     DV++A
Sbjct: 178  RRRFRKAFFMVLAPAYDGRDRQVFAVLAMLAARNRVPLIATNQPLYHHPERRPLSDVVIA 237

Query: 234  VAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +     +SQ         + YLK+  EMV IF D P+A+ENT     + SF L+      
Sbjct: 238  IREHVQISQAGFLLAPNAERYLKDSREMVRIFGDYPDAVENTQVFFGKLSFSLKELQHNY 297

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P       +D  +  +  L     AG   R  QG  +K        +++D+EL +I    
Sbjct: 298  P-----SENDPGETPQETLERLTRAGAAKRYPQGVPSK------VAKQIDYELKLIGDKN 346

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            ++ YFL V   IQ A+ +   +  GRGS A SV  Y L IT++DP + +LLF+RF++ DR
Sbjct: 347  YASYFLTVHRIIQHARYDLKVLCQGRGSAANSVICYCLEITEVDPQKSTLLFDRFISMDR 406

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
               PD D+DF  DRR+EVI+++  +YG +         + + ++A R+V +A  +     
Sbjct: 407  DEPPDIDVDFEHDRREEVIQFIYRRYGIDHAGLTAGVTTYRTRSAGREVAKAFGLSEDVQ 466

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
              +  L+       +S +    D++     + DP    +L+ + +L G  RH + H  G 
Sbjct: 467  SAISSLVWGWSEDNLSDR----DAKAAGLDVKDPVTQNVLQYASELLGFPRHLTQHVGGF 522

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI    L ++VP+ +    D  + +++   ++   ++K D L L  LT L+K+   L   
Sbjct: 523  VITRDRLDEVVPIMKTAMPDRYMIEWDKDDLDNVKILKVDVLALGMLTCLRKAFSLLELH 582

Query: 593  G----VKVDLSLIPFDD--HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
                    DL      D     Y ++    TLG+FQ+ES      L  ++P    D++  
Sbjct: 583  YDVKKTLADLGNREHGDEGKPVYEMMGRADTLGVFQIESRAQMSMLPRLKPKIFYDLVIE 642

Query: 647  VSLYRPGPI--DNIVVYNNRKNGKE---KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            V++ RPGPI  D +  Y  R+  +     +      ++ +L+ T GV ++QEQ MQIA  
Sbjct: 643  VAIVRPGPIQGDMVHPYLKRREQRARNIPVEYPSKELEAVLERTLGVPLFQEQAMQIAIT 702

Query: 702  LSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             +G+  +EAD LRRAM   K    +   ++RFI G          A   F  +  F +YG
Sbjct: 703  AAGFRPAEADKLRRAMATFKRTGTIGDFEKRFIEGMVSKNYDPEFAKQCFNQIKGFGEYG 762

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            F +SHAA++A++ Y ++W+K +YP  F AA +  +        +  +DAR+  ++IM   
Sbjct: 763  FPESHAASFALLVYASSWLKAYYPDVFCAAMLNSQPMGFYAPAQLVRDAREHGVRIMAVD 822

Query: 821  VNTPCVDFKVG----------------------DNRIYYSLAAIKGVGTTTARHIMEASA 858
            +N    D  +                        + +      IKG+ +   + +++   
Sbjct: 823  INESEWDCTLEEAVFDRKTVDFRHGQMREIIKTRHAVRLGFRQIKGLSSDDMKRLVDNRG 882

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
               + S+ D   R     L + V+E L  A A      SR + L ++  +       +  
Sbjct: 883  QG-YGSVRDLWLR---SGLPKSVIERLADADAFRSIHLSRREALWAVRAL-------DVK 931

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
               +   +F   +          K        +   + R L      HP+   +  LRK 
Sbjct: 932  SAAEELPLFEQVRHIDLQPEPAAKLPDMLPGEQVIEDYRYLSLSLKAHPVSFLREELRKA 991

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            GI    + ++   G  + +A +V+ +Q+  + KG  + ++T  +      A  +
Sbjct: 992  GITRNVDLLSVPNGKRVTIAGLVLVRQRPGSAKG--VIFMTLEDETGVANAIVW 1043


>gi|309782805|ref|ZP_07677526.1| error-prone DNA polymerase [Ralstonia sp. 5_7_47FAA]
 gi|308918583|gb|EFP64259.1| error-prone DNA polymerase [Ralstonia sp. 5_7_47FAA]
          Length = 1079

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/1060 (24%), Positives = 444/1060 (41%), Gaps = 80/1060 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA   + ++++       A+A+TD  ++         +    ++
Sbjct: 11   PDYAELHCISNFTFLTGASHPSELVERAKLYGYQALALTDECSVAGTARALVASKEHELK 70

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             II             + N    P+     +VLL    EGY  L E+++   L    K  
Sbjct: 71   LII--------GSRFTVRNADGEPW---LRLVLLAQNIEGYGNLSEIITHARLA-ASKGE 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             R+    L     E   +        I    +    Q    +    +++FGDRL + L+ 
Sbjct: 119  YRLLADDLASPQGELAHLRGAPDCLAILLPDYDPDPQQLLAQAWWCQRVFGDRLSIALEL 178

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
              R  D      V+ ++   ++P+VAT      + +    HDVL A+  S  +S+     
Sbjct: 179  PLRHADDRHRGTVLAVSEQIDVPMVATGGVQMHTRQRKPLHDVLTAIRLSKPLSECGLEL 238

Query: 247  RVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              + +  ++ R ++  ++      + L  TVE+A  C+F L       P  +  E     
Sbjct: 239  APSAEQAMRTRMQLAFLYQGEGGEKILRRTVELAALCNFSLDEIEYEYPSEVVPEGMM-- 296

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  LR +  AG   R   G   K         +++ EL +IA + +  +FL V D +
Sbjct: 297  --PAEYLRAETFAGAARRYPNGVSDK------VHAQIEEELGLIAELGYEPFFLTVYDVV 348

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+   I +  GRGS A S   Y L IT+++P   + LF RFL+  R   PD D+DF  
Sbjct: 349  KFARNEGI-LCQGRGSAANSAVCYCLGITEVNPDSGNTLFARFLSRARNEPPDIDVDFEH 407

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL +    V+++ K      +
Sbjct: 408  QRREEVIQYIYKKYGVTRTALAAALITYRTRSALRDVGRALGIDLGIVEQVAKGQAWWDS 467

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 +  A  +  +      P V R  ++  +L G  RH S H  G VI    LS+LVP
Sbjct: 468  R----KEFAQRAGQQGLDPESPLVLRWAQLVDQLRGFPRHLSQHVGGFVIAQGKLSRLVP 523

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVKV---- 596
            +      +  V Q++   +E   L+K D L L  LT ++++LD +     +R        
Sbjct: 524  IENAAMENRRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMVDALPGRREHYGATAK 583

Query: 597  -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              +  +P DD ETY ++    T+G+FQ+ES   +  L  ++P    D++  V++ RPGPI
Sbjct: 584  LAMQHLPDDDTETYDMICRAETIGVFQIESRAQQSMLPRLRPREYYDLVIQVAIVRPGPI 643

Query: 656  DNIV--VYNNRKNGKEK-----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
               +   Y  R+  K       +    P +  +L+ T GV I+QEQVM+IA     ++  
Sbjct: 644  QGGMVHPYLQRREAKRNGNTDCVTYPGPEVKAVLERTLGVPIFQEQVMEIAMKAGDFTAD 703

Query: 709  EADVLRRAMGK-KIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            +AD LRR M   K K  + + +ER +     K          + + +  FA+YGF +SHA
Sbjct: 704  DADRLRRDMAAWKRKGNLTQHQERLVHAMVVKRRYDPAFVEALCKQMEGFAEYGFPESHA 763

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A +A ++Y ++++K H P  F AA +  +        +  Q+AR+ +++++P  V     
Sbjct: 764  AGFAKLAYVSSFLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSHVRVLPADVTASVW 823

Query: 827  DFKVGDNRI-------------YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
            D  +                     L  I+G+    A  I  A A  PF S+ED   R  
Sbjct: 824  DSTLHPRADGETGEDGLVQPDIRLGLNRIRGMRKPAAERIEAARAQAPFTSVEDLAHRAA 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
              + +  VL +   A AL      R Q L     +Q+  +     R  +           
Sbjct: 884  LDRHDLNVLAA---ANALKSLAGHRRQALWQTLALQEPGRDHALLRQAR----------P 930

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
                + L    +    +    +   LG     HP+ + +  L +M             G 
Sbjct: 931  VEAPLELPAPPIGEEVM---ADYGSLGLSLQSHPVGLLRARLDRMRFATAATLAGYRNGQ 987

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              R   +V  +Q+  T KG+   +V+  +         +P
Sbjct: 988  LARACGIVTVRQRPGTAKGT--IFVSIEDETGAINVILWP 1025


>gi|2073511|emb|CAA72479.1| DNA polymerase III alpha subunit [Rickettsia prowazekii]
          Length = 780

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/797 (43%), Positives = 493/797 (61%), Gaps = 38/797 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P F+HL+  SSYS LE AL++  +++     + PA+ ++D  NLF +LEFS  A    +Q
Sbjct: 3   PEFIHLRTQSSYSFLESALTIEKVVELALLHKMPALCLSDRGNLFGSLEFSLYAVKKKLQ 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PI G  L+I            +        I+L+     GY+ L++L S  +  +  K  
Sbjct: 63  PIHGVILNI------------QYDINAFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I    L +   EG+I L   + G + +       + A       + + GDR Y  + R
Sbjct: 111 EHIGFEDLIKY-QEGVIALCCYTDGIVGKCLLARKQEQAILFARRLQAILGDRFYFEIMR 169

Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H    +++ E+  +Q+A    +P+VATN  LF  +  + AHDVL+ ++        DR  
Sbjct: 170 HDLPEEQFIENSYIQIASELSIPIVATNKVLFSEKSMHYAHDVLLCISEGVTKEYPDRKT 229

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           V+ + Y K+ +EM  +FSDLP A++NT+ +  RC F    + P+LP F  ++        
Sbjct: 230 VSENCYFKSPAEMRKLFSDLPNAIQNTINLRERCYFAAHPNPPMLPNFSTQDI------S 283

Query: 308 ENEL-RNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLI 359
           E  L R  A  GL  RL     A+    +       +Y  RL++EL++I  M F+GYFLI
Sbjct: 284 ETYLIRKYATEGLLARLVTKFKAENISLEHQEKLKTEYFTRLNYELDIICNMNFAGYFLI 343

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V+DFI+W+KK  I VGPGRGSGAGSV A++L +TD+DP++F LLFERFLNP+R+SMPDFD
Sbjct: 344 VSDFIKWSKKQGILVGPGRGSGAGSVVAWSLLVTDLDPIKFGLLFERFLNPERISMPDFD 403

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           IDFCQ+RR+EVI YV++KYG  RV QIITFG +QAKA ++DV R L +PY   D L +L+
Sbjct: 404 IDFCQERREEVINYVRSKYGPNRVGQIITFGKMQAKAVIKDVARVLSLPYKLADYLTELV 463

Query: 480 PNDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHA 529
           P    +PVSL QAI +      A   +           +  +L+ S  LEGL+RH+STHA
Sbjct: 464 PFSAINPVSLEQAIREVPELANAAKGNGLYNLEGDAELIKLVLDTSLILEGLHRHSSTHA 523

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
           AGIVI    L  +VP+Y+D  +D+ +  ++MK+ E AGLIKFDFLGL+TLT++      L
Sbjct: 524 AGIVIAGTDLVDIVPVYKDANADMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITNCKKLL 583

Query: 590 AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            ++G+K+D   + FDD +TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +L
Sbjct: 584 KEQGIKIDFDDMTFDDKKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGAL 643

Query: 650 YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
           YRPGP++NI  Y   K+  ++   +H L++P+L+ET GV+IYQEQV +IAQ+L+GY+L  
Sbjct: 644 YRPGPMENIPTYIACKHKLQQPDYLHKLLEPILEETYGVVIYQEQVQRIAQVLAGYTLGA 703

Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
           AD+LRRAMGKKIK+EM++Q+E F+ GA  N IS + A +IF  +AKFA YGFNK+HAAAY
Sbjct: 704 ADLLRRAMGKKIKKEMEEQEEIFVKGAIANNISPSQAKSIFSTVAKFAGYGFNKAHAAAY 763

Query: 770 AVISYQTAWMKTHYPVE 786
            VISYQTA++K +YP E
Sbjct: 764 GVISYQTAYLKANYPAE 780


>gi|209884317|ref|YP_002288174.1| error-prone DNA polymerase [Oligotropha carboxidovorans OM5]
 gi|209872513|gb|ACI92309.1| error-prone DNA polymerase [Oligotropha carboxidovorans OM5]
          Length = 1107

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/1062 (23%), Positives = 432/1062 (40%), Gaps = 88/1062 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  + + +++S L GA      + K +     AI I D N L   +    +        
Sbjct: 2    TYAEIGITTNFSFLRGASHPQEYVHKASRYGLYAIGIADRNTLAGVVRAYGE-------- 53

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
             +G +      +   +           P I+      E Y RL +L+S+  L  + K   
Sbjct: 54   -LGNRNRKVRYNPKLLIGTRLVFDDGTPDILAYPRDREAYGRLCQLLSKGKLRGE-KGEC 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN--LQ 187
             +    L E     L+++       +    F   S+   + L   K+L  + +++   L 
Sbjct: 112  HLRFDDLAEFSEGQLLVV-------VSSYRF--DSEKILRVLGALKELPAEGVWLAATLF 162

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
             H G DR R  ++  LA    + L+ATN+ L+         DVL  +     + +  R  
Sbjct: 163  FH-GDDRRRMLRLEHLAAKTHVSLIATNDVLYHFHRRRALQDVLSCIREKVTIHEAGRRL 221

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L+   EM  ++ D P+ALE T+  + R +F L       P           K 
Sbjct: 222  EAHAERHLQPHKEMARLYKDFPDALEETIRFSDRITFSLDQLKYQYPDEPVPPG----KT 277

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  LR+    G+     +G        +  R  ++ EL +I ++ ++ YFL V D +++
Sbjct: 278  AQEHLRDLTETGIRKYFPEGID------EGLRGTIEKELRLIEKLGYAHYFLTVHDVVRY 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A S   + L IT ++P    +LFERF++ +R+  PD D+DF   R
Sbjct: 332  ARSQHI-LCQGRGSAANSAVCFMLGITSVNPAETDVLFERFISEERLEPPDIDVDFEHSR 390

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+ V  +YG  R A + T    + ++A+RDVG+AL +       L   +       
Sbjct: 391  REEVIQCVFQRYGRHRAAIVATVIDYRPRSAIRDVGKALGLTEDVTAALADTVWGSWGDS 450

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +S        +       +P + R +E++ +L G  RH S H  G V+    L   VP+ 
Sbjct: 451  LS----EMQVKQAGFDPTNPMIVRAVELATELIGFPRHLSQHVGGFVLTQDRLDTYVPIG 506

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSL-IPFD 604
                 D    +++   I+   ++K D L L  LT ++K  D +A  +G + +L+     D
Sbjct: 507  HAAMEDRTFIEWDKDDIDILKMMKVDVLALGMLTCIRKCFDLIADHKGRRYELADVRSKD 566

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYN 662
            D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI    +  Y 
Sbjct: 567  DDPVYKMLQRGESLGVFQVESRAQMNMLPRLKPRTFYDLVIEVAIVRPGPIQGNMVHPYL 626

Query: 663  NRKN-GKEKIVSIHP------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             R+N   E+I   +P       +  +L +T GV ++QEQ M+IA   + ++  EA+ LRR
Sbjct: 627  KRRNLKPEEIEYPYPKGGNPDELKSILHKTLGVPLFQEQAMRIAMAAAEFTSEEANGLRR 686

Query: 716  AMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AM   +    M K +ER +    K G     A + F+ +  F  YGF +SHAAA+A + Y
Sbjct: 687  AMATFRHVGTMPKFEERMVGRMIKRGYDPKFAQSCFDQIKGFGSYGFPESHAAAFAQLVY 746

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831
             +AW+K  +P  F    +  +        +   DAR   + +    V+       +    
Sbjct: 747  VSAWLKCFHPDAFACGLLNSQPMGFYAPAQIVGDARTNGVDVREIDVSFSFSQNTLEEKS 806

Query: 832  --DNRIYYSLAAIKGVG------------------TTTARHIMEASADKPFDSLEDFCSR 871
               + +      I G                        R I+EA   +PF SLEDF   
Sbjct: 807  GRHHALRLGFRQIDGFKCVDPDEQEWRRRQGKDPLEDWGRAIVEARMQQPFASLEDFAR- 865

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
                +L +R L  L  A A    G  R   L ++  +                 +F    
Sbjct: 866  --ETRLPKRALILLADADAFRSLGLDRRSALWAVRRLPDAV----------PLPLFQSAA 913

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                                   + + +     GHP++  + +  + G+           
Sbjct: 914  AREQPDEGSSPLPQMPLPEEVVADYQTVRLSLKGHPMEFLREMFEQEGVVPCAAVSHEND 973

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +R A +V+ +Q+  +  G  + ++T  +         +P
Sbjct: 974  KRRVRCAGVVLVRQRPGSANG--VVFMTLEDETGIANIVVWP 1013


>gi|325282335|ref|YP_004254876.1| DNA polymerase III, alpha subunit [Deinococcus proteolyticus MRP]
 gi|324314144|gb|ADY25259.1| DNA polymerase III, alpha subunit [Deinococcus proteolyticus MRP]
          Length = 1337

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/733 (43%), Positives = 448/733 (61%), Gaps = 21/733 (2%)

Query: 318  GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
            G E    +   A   HA    +R ++EL+VI  M F  YFLIVAD+I WAK  +I VGPG
Sbjct: 459  GTEEPSEETTRAHHRHALVILRRAEYELSVINNMGFPDYFLIVADYINWAKDQDISVGPG 518

Query: 378  RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
            RGSGAGS+ AYA+ IT++DPL F LLFERFLNPDR+SMPDFDIDF   RR EV+ YVQ K
Sbjct: 519  RGSGAGSLVAYAMRITNLDPLEFDLLFERFLNPDRISMPDFDIDFNDARRMEVVEYVQRK 578

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDS 496
            YG ++VAQI TFG++ +KA L+DV R + + Y++VD++ KLIP       SL QA     
Sbjct: 579  YGEDKVAQIATFGTMASKACLKDVARVMGVEYTKVDKVSKLIPVKFGKSYSLEQAREAVP 638

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
               +   AD  +    E +QKLEGL RHAS HAAG+VIG   L+ LVP+ RD      V 
Sbjct: 639  DIAQMLEADTELRGAYEFAQKLEGLTRHASVHAAGVVIGREDLTNLVPIMRDTSGSGIVC 698

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTK 615
            Q++MK +E  GLIK DFLGL+TL+ L ++   L + +G+++D   +PFDD  TY L++  
Sbjct: 699  QYDMKSVEDIGLIKMDFLGLRTLSFLDEARRILRESKGIEMDFDTVPFDDEATYELMSRG 758

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
             T G+FQLE +G+  A   ++P  + DIIAL +LYRPGP++NI  Y  R +G E++    
Sbjct: 759  DTKGVFQLEGAGITDASRRLRPRRLADIIALSALYRPGPMENIPTYVRRHHGVEEVTYED 818

Query: 676  P-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
                   ++P+L+ET G+ +YQEQ+MQIA  ++GYSL  AD+LRRAMGKK   EM KQ++
Sbjct: 819  FPNSEKWLEPILRETYGIPVYQEQIMQIASDVAGYSLGGADLLRRAMGKKDAAEMTKQRQ 878

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ GA  NG+ +  A  +F+LL  FA+YGFNKSH+AAY VI+YQTAW+K +YPVEF+AA
Sbjct: 879  LFVEGAEGNGVPRDEANKLFDLLDAFANYGFNKSHSAAYGVITYQTAWLKANYPVEFMAA 938

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +T+E  + +K+ ++  DAR+ +++++PP +N    DF V    IY+ L AIKG+G    
Sbjct: 939  LLTVERRDSDKVAEYISDARKMDVRVLPPDINRSSSDFAVAGEEIYFGLYAIKGLGEAAV 998

Query: 851  RHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              I++       F+SL +FCSR+D+K  NR+ LESL+ +GA D FG  R QLL+SLD+  
Sbjct: 999  LRILDERERAGHFESLANFCSRIDNKTCNRKALESLIKSGAFDAFGE-RRQLLESLDDAL 1057

Query: 910  KYAQWVEK---NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
            + A    K           +FA ++    ++             R   E+  LG Y SGH
Sbjct: 1058 EDAAGTAKINQRAQAGMSMMFALDE-VVEERPLRSGVPPFTELERLAAEKEALGLYISGH 1116

Query: 967  PLDVYKPILRKMGIKGYEES-----VATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVT 1019
            PL+ ++  LR+       +      V   +G      LA M+   Q+K T+ G  +    
Sbjct: 1117 PLEQHEG-LREAASCRIADLDSWFEVQPKKGKRQKAVLAGMIEGVQKKPTKSGGMMARFI 1175

Query: 1020 FSEPAKEYEANFF 1032
             ++ + + E   F
Sbjct: 1176 LADESGQIELVAF 1188



 Score =  272 bits (695), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 95/354 (26%), Positives = 160/354 (45%), Gaps = 21/354 (5%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAA---DQQPA-IAITDTNNLFSALEFSQK 61
           EK   F HL  H+ YSLL+GA  L ++L        +   A +A+TD  N+  A+ F   
Sbjct: 27  EKPKRFAHLHQHTQYSLLDGAAKLKDLLKWAKETSPEGSDAALAMTDHGNMHGAVHFYNY 86

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
           A  AG++PI+G +  +      +    +G+     +  + LL    EGYQ L  L SR Y
Sbjct: 87  AQDAGVKPILGYEAYVVPGFGTRRDRTRGQDGEKGIYHLTLLARDFEGYQNLCRLSSRGY 146

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                    RI    LQE  ++G+I  +G     + +         A++RLL ++ LFG+
Sbjct: 147 TEG-YYYKPRIDHELLQE-HSKGVIAFSGCLGSEVQQLLLMGRHDEAKERLLWYRDLFGE 204

Query: 181 RLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y+ +Q H   ++ + + ++ Q A    + +VATN+  ++ +ED   H+ L+A+     
Sbjct: 205 NYYIEIQNHGLKEQDQNNPILRQWAQELGIGMVATNDGHYVKKEDATPHETLLAIQTKAT 264

Query: 240 VSQKDRPRVTPDHYL-KNRSEMVSIF--SDLPEAL-ENTVEIARRCSFILQVHA---PIL 292
           ++ ++R +   D +  K+  EM +    SD  E + +N   IA  C+  L V       +
Sbjct: 265 LADENRFKFPCDEFYVKSLEEMQAALPVSDWGEEVFDNAANIADLCNVELPVGKKRVYQM 324

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
           P+    E     +    E+R +  AG+  R    A       +DY  R   EL 
Sbjct: 325 PQLPIPEG----RTMAEEMRVQTYAGMMRRYPAHATE--ALLRDYAARSLTELG 372


>gi|168700398|ref|ZP_02732675.1| DNA polymerase III alpha subunit [Gemmata obscuriglobus UQM 2246]
          Length = 1617

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/787 (36%), Positives = 436/787 (55%), Gaps = 36/787 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+G   +  ++ +       A+AITD  NL+ A+EF  +    GI+PI
Sbjct: 5   FCHLHLHTHYSLLDGFNRIQPLVKQTKELGMNAVAITDHGNLYGAIEFYMECKKGGIKPI 64

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  +     L   ++G+  F T   + LL     G++ LI+L S  YL     ++ R
Sbjct: 65  IGYEAYLAPGSRLDRDSKGELGFST--HLTLLAQNETGFKNLIKLSSSAYLEG-FYRNPR 121

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I    L E   +GLI L+G  +G  ++    +  Q AEK    F+K+FG+  ++ +Q + 
Sbjct: 122 IDRQIL-EAHKDGLICLSGCLAGEFNQYIIKDKPQEAEKTAKWFRKVFGENYFIEIQNNG 180

Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            G           +A    +PLVAT ++ +L  ED +AHD+L  +     +    + +  
Sbjct: 181 IGLQDQCTPVAADIANRLGVPLVATADAHYLCAEDAQAHDILFCINTRQ-MHDPRKKKYP 239

Query: 250 PDHY-----LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            +       +++  +M  +F +  +A+  + EIA + +  L       P F   E     
Sbjct: 240 EERMPNPYFVRSPEDMYRLFPNYQDAVARSQEIADKVNIDLDFKKRHFPVFTTPEG---- 295

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
           +  E  LR     G+E R       +G  ++  R+RLD EL +IARM FS YFLIV DF+
Sbjct: 296 RTPEQYLRELCERGMEERY------EGKASEAVRKRLDHELGIIARMGFSSYFLIVWDFV 349

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           ++A++  IP    RGSG G++  Y L ++ + P+ + LLFERFL+P+R   PD DIDFCQ
Sbjct: 350 RFAREEGIPC-TARGSGCGAIVCYLLYMSHVCPIEYDLLFERFLDPNRSEAPDIDIDFCQ 408

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           DRR+ VI YV+ KYG E VAQI TFG+L AKAAL+DVGR L     +++ LCKL+P   A
Sbjct: 409 DRRELVIDYVKKKYGEESVAQIGTFGTLAAKAALKDVGRVLGQTPDRMNALCKLVPMKGA 468

Query: 485 HPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              SLQ A+ +   F+     DPS+ ++++I+ KLEG  R+   HAAG+VI + P++  V
Sbjct: 469 ISKSLQEALDESPDFKREYDQDPSIKQVVDIALKLEGANRNVGKHAAGVVIANGPVTNYV 528

Query: 544 PMYRDVRSD----------LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
           P+ R  +               TQ+ M  +EK GL+K DFLGL+ LT+L   +  + + R
Sbjct: 529 PVQRPPKKGGSDEGSDDTTTMTTQWEMGILEKVGLLKMDFLGLRNLTVLDNCVKLIKKTR 588

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
           G+ V+ +  P  D  TY LL      G+FQLES G+R+ L+ M+PD I D+IA+++LYRP
Sbjct: 589 GITVEPTKFPLTDEATYQLLQRGDAKGVFQLESEGIRELLKRMKPDNIRDLIAVLALYRP 648

Query: 653 GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           GP++  +V  Y   KN +++    HP+++ +L ET  V++YQEQ+M+I   L G  L++A
Sbjct: 649 GPLEGGMVDEYVECKNKRKQPFYPHPVMEEVLSETFAVMVYQEQIMRILNKLGGIELAKA 708

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
               +A+ KK  E ++ +K  F++GA + G+    A  IFEL+ KF  YGFNK   A   
Sbjct: 709 YACIKAISKKNFEIINARKVDFVTGAKERGLEAEKADEIFELIVKFGGYGFNKCVVAGTE 768

Query: 771 VISYQTA 777
           V   +T 
Sbjct: 769 VTDAETG 775



 Score =  244 bits (622), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 83/285 (29%), Positives = 122/285 (42%), Gaps = 15/285 (5%)

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ---DARQFNIQIM 817
             + SH AAYA I YQTA++KTHY  E++AA ++ E+D+  K   F     DAR+  + ++
Sbjct: 1205 VHNSHTAAYAQIGYQTAYLKTHYTAEYMAALLSSEIDDGNKRDVFIDHISDARRLGVDVL 1264

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKK 876
            PP VN    DF V +NRI + L AIKGVG   A  I+ A      F  L DFC RVD + 
Sbjct: 1265 PPDVNRGMADFDVLNNRIIFGLTAIKGVGRGAALEIVRARNEGGKFKDLFDFCERVDRRI 1324

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            + +  +E ++ AGA D FG  R     ++      A      +      +F   +     
Sbjct: 1325 IAKAAVEGMIQAGAFDVFGK-RSAQFAAVAKAYAVADQRAAEKRKGQTGLFDDVEEAADA 1383

Query: 937  KIT---LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-ATIRG 992
              T   L        + R + E+  LGFY S HPL  +   LR+               G
Sbjct: 1384 GPTNQGLTDVPEWPETERLKFEKEALGFYISSHPLAQHDEQLRRFRTHDCGVLAKGGKNG 1443

Query: 993  NNIRLAAMVVSKQQKKTRK-----GSRIGWVTFSEPAKEYEANFF 1032
               R+A M+ +   + T       G +       +         +
Sbjct: 1444 TEARIAGMITNLDVR-TANKGRNIGRKYAMFRIEDFTGSVRCIMW 1487


>gi|322385804|ref|ZP_08059448.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            cristatus ATCC 51100]
 gi|321270542|gb|EFX53458.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            cristatus ATCC 51100]
          Length = 1036

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1024 (29%), Positives = 496/1024 (48%), Gaps = 100/1024 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS ++  +S+   + +       ++ + D +NL+ A  F ++A AAG+QP++
Sbjct: 3    TQLDTKTVYSFMDSLVSIKKYVQRAKGLGYKSLGMMDVDNLYGAYHFLEEAKAAGLQPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++++                    ++ LL   ++GY+ L+++ +   +  Q  +    
Sbjct: 63   GLEMEV-------------FKDGNPLNLRLLALDSQGYRNLMKISTLKMMNRQNWE---- 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L     +GL ++     G +D+             L  +  +F D     L R   
Sbjct: 106  DFQHL----FKGLALIVPIFEG-VDQLDLG---------LDFYVGVFPDTPRQELTR--- 148

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P++  +   +  + D E   +L A+  +  + +     ++  
Sbjct: 149  ------------------PVLPLHTVRYFEQGDLETLQMLRAIRDNISLREVG--HLSSH 188

Query: 252  HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +L     +   F++  PE+L N  ++     + +      LPRF      + ++    E
Sbjct: 189  EFLLAPESLEETFAENFPESLTNLEKLVAGVHYEINTEL-KLPRF------NPERPAVEE 241

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A  GL  R        G   + Y+ RLD EL+VI +M F  YFLIV D +++ +  
Sbjct: 242  LRELAETGLAKR--------GLAGEVYQARLDQELDVIHQMGFDDYFLIVWDLLRFGRSQ 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ AYAL IT IDP+  +LLFERFLN +R +MPD DID     R E 
Sbjct: 294  GYYMGMGRGSAVGSLVAYALEITGIDPVEKNLLFERFLNLERYTMPDIDIDIPDVYRPEF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I           
Sbjct: 354  IRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNMTKKIGFRDNLTT--- 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   +  FR+   +     +  EI++K+EG  R  S HAAG+V+ D  L+  +P+     
Sbjct: 411  AYERNIAFRQIINSKLEYQKAFEIAKKIEGNPRQTSIHAAGVVMSDDDLTNQIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETY 609
             D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L + GV +D++ I  +D ET 
Sbjct: 469  EDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQQMKEAALDKYGVDIDIARIDLEDEETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E +G    L+ +QP   E+++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  RLFAAGNTKGIFQFEQAGAISLLKRVQPVKFEEVVATTSLNRPGASDYIDNFVKRKHGRE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  I P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + +
Sbjct: 589  RVEMIDPSLEDILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAAEMHQME 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E F+ GA K G S+T A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F  
Sbjct: 649  EEFVKGAVKLGHSETKAKEVFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDIFFD 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA  F  ++ P +++      K  + +IY  L  IKG+    
Sbjct: 709  VMLNYSSSD------YITDALGFGFELAPLTIHNIPYKDKFQERKIYLGLKNIKGLPRDF 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E     PF S+EDF  R+        +L  LV  G  D F  +R ++L +L N+ 
Sbjct: 763  AFWIIEERQKNPFSSVEDFILRLPQSYHKLPLLSPLVQLGLFDVFEPNRQKILHNLPNLF 822

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +A        ++  ++FA    +++D           ++ +FE EQ ++G   S HPL 
Sbjct: 823  VFA--------DELGSLFADTSYSWTDS------EDFTAAEKFEQEQALIGIGLSDHPL- 867

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 L K   + +         +   +   V S +  +T+ G  + ++  ++  K+ + 
Sbjct: 868  ---ISLAKKANRSFVWIEELADNSKATILVEVQSIKVIRTKNGENMAFMQVTDTKKKLDV 924

Query: 1030 NFFP 1033
              FP
Sbjct: 925  TLFP 928


>gi|85712559|ref|ZP_01043606.1| DNA polymerase III alpha subunit [Idiomarina baltica OS145]
 gi|85693550|gb|EAQ31501.1| DNA polymerase III alpha subunit [Idiomarina baltica OS145]
          Length = 1027

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/1032 (25%), Positives = 454/1032 (43%), Gaps = 70/1032 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L   S+YS L  A   +  +D+       AIA+TD  ++   +   + A    I+ 
Sbjct: 2    RYAELHCLSNYSFLRSASHPSEFVDRATELGYEAIAVTDECSVAGVVRAYEAARERPIKL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +                   P     V+L  T   Y  L E ++      + K S 
Sbjct: 62   IVGSEFM----------------LPGAGVFVVLCPTRSAYAGLCEKITLFRQRSE-KGSY 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + L        E L++                S   A       K+ + DRL++  +RH
Sbjct: 105  AVQLDDFLHGFDEALLLWWPQCDTEGL------SYAKALNLGHQLKRHWRDRLWLLYERH 158

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPR 247
              + D+     V +L+   +LP+ A+N ++   E      D+L A  A+ ++V   +   
Sbjct: 159  YQHNDKALFRMVCRLSQQVKLPVTASNGAVMHDENRQPLLDILSATNANQSLVQHPEVCA 218

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  +  L++   + + +      L  + +IA RC+F L       P  +  +        
Sbjct: 219  LNSERRLRDLKALQACYP--ANWLTESAKIADRCTFCLSELRYEYPAELVPKGM----TA 272

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR+    G + R  +G        +    + + EL +IA   +  +FL + D +++A
Sbjct: 273  QQYLRHLTEQGAQQRYPEGV------PESVVSQYEKELKLIAEQHYEYFFLTIYDLVEFA 326

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I    GRGS A SV  Y L IT ++P +F +LFERF++ +R   PD D+DF  +RR
Sbjct: 327  QSQGIFY-QGRGSAANSVVCYCLKITAVNPAQFDVLFERFISKERDEPPDIDVDFEHERR 385

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG +R A   T    + K+A RDVG+AL     Q+    + +        
Sbjct: 386  EEVIQYIYKKYGRKRAALAATVIRYRFKSAFRDVGKALGFSEQQLQTYRQNLDRRDKTQN 445

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              + +A+      A +       LL ++++L G  RH S H  G VI    L+QLVP+  
Sbjct: 446  WKEQLAEQ---YPALVQSKRGQHLLSLTEQLMGFPRHLSQHVGGFVIAANELTQLVPIEN 502

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                D  V Q++   +E   L+K D L L  LT L+KSL  L  +R + + L+ IP +D 
Sbjct: 503  ASMRDRTVIQWDKDDLEVLKLLKVDVLALGMLTALRKSLGLLKEKRNLTLGLADIPQEDP 562

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNR 664
              Y  L    ++G+FQ+ES      L  ++P+   D++  +++ RPGPI  D +  Y  R
Sbjct: 563  VVYRALQQGDSVGVFQIESRAQMNMLPRLKPNTFYDLVIQIAIVRPGPIQGDMVHPYLRR 622

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKE 723
            + GKEK+      +  +L+ T GV I+QEQ +++A + +G+S  EAD LRRAM   K   
Sbjct: 623  RAGKEKVDYPSDEVRQVLQRTLGVPIFQEQAIKLAMVAAGFSGGEADQLRRAMAAWKSTG 682

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            ++ + + + ISG    G S++ A  +F  +  F  YGF +SH+A++A ++Y +AW+K HY
Sbjct: 683  KLQQFEHKLISGMRARGYSESFAQRLFHQICGFGQYGFPESHSASFANLAYASAWLKVHY 742

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNRIYYSLA 840
            P  F    +           +  QDA++  ++ +P  VN    D++      N +   L 
Sbjct: 743  PAAFFVGLLNSLPMGFYSPSQLIQDAKRHGVRFLPADVNYSQWDYQWLADQGNCVRIGLR 802

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             I G+  +    ++ + AD  F + E          L+   +++L  A AL      R Q
Sbjct: 803  QIFGLSRSRTALLLNSRADALFANTEQLRR----GGLHESDIQALAKADALTSLSGHRYQ 858

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
                       AQW   + +++   +F +E      +I+++    E+     + +    G
Sbjct: 859  -----------AQWDALSLSDQQMPLF-NEVADNKSEISIKPSETED----IKADYASTG 902

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                 HP+ + +           E       G  I +  +V  +Q+  T+ G  + ++T 
Sbjct: 903  LSLRRHPMALIRNHPEVTKSITAETLAGCRSGQVIEVIGLVTCRQRPGTKSG--VTFLTL 960

Query: 1021 SEPAKEYEANFF 1032
             +         +
Sbjct: 961  EDETGNMNVVVW 972


>gi|295688141|ref|YP_003591834.1| DNA polymerase III subunit alpha [Caulobacter segnis ATCC 21756]
 gi|295430044|gb|ADG09216.1| DNA polymerase III, alpha subunit [Caulobacter segnis ATCC 21756]
          Length = 1082

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/1071 (24%), Positives = 453/1071 (42%), Gaps = 105/1071 (9%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P++  LQ  S++S L GA     +     A    A+ I D N+L   +     A  
Sbjct: 1    MPRRPAYAELQTTSNFSFLRGASHAEELAIAAEALGLTAVGIADRNSLAGVVRAWTAAKQ 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              ++ + GC+LD                    PS++   +  E + RL  L++    L Q
Sbjct: 61   RQVRVLTGCRLDF---------------MDGTPSLICYPTDREAFARLTRLLT----LGQ 101

Query: 125  GKQSVRIC-LSWLQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             +     C LSW   +  +EG I L                 +  E+ L         R 
Sbjct: 102  RRAEKGQCHLSWADFLDHSEGQIGLIVPP---------RTLDETFERDLTRMAGDLSGRS 152

Query: 183  YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++   R +   D  R S++  L      P+VATN+ L+   E     D++  V     + 
Sbjct: 153  WLAASRAYAAQDLKRLSRLDALGRDAGAPIVATNDVLYHGPERRPLQDIITCVREHCAIH 212

Query: 242  QKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            +   R     + +LK+ +EM  +F   P A+E TVEI  R  F L       P       
Sbjct: 213  EAGFRLEANAERHLKSAAEMARLFERWPRAVERTVEIVERIGFDLGQIKEQYPDEPVPPG 272

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                K     L +   +G   R   G   K       + +L+ EL +IA+M +  YF+ V
Sbjct: 273  ----KSAMQHLTDLTWSGAAWRYPGGIPEK------VKAQLEEELRLIAKMDYPNYFITV 322

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D ++ A+K  I +  GRGS A S   Y L +T IDP    LLF RF++ +R   PD D+
Sbjct: 323  HDIVREARKMGI-LCQGRGSAANSSVCYCLGVTAIDPTEHRLLFTRFISENRGEPPDIDV 381

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EV++YV  +YG E  A   T    + ++A+RDVG+AL +       L   + 
Sbjct: 382  DFEHERREEVMQYVYERYGREYAAICGTVIHYRPRSAIRDVGKALGLTEDVTSLLAGTVW 441

Query: 481  NDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                + +       +   R+A L    P + R + ++ +L    RH S H  G V+  R 
Sbjct: 442  GSWGNGLP------EEHLRDAGLDPQAPEIARAVALATELLKFPRHLSQHVGGFVLTKRR 495

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595
            L + VP+      D    +++   I+   L+K D L L  L+ +Q+++  L +   +   
Sbjct: 496  LDETVPIGNAAMKDRTFIEWDKDDIDSLSLMKVDILALGMLSAIQRAMTMLREDHGQAWL 555

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             DL+ IP +    Y +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 556  KDLADIPKEVSGVYDMLCKADSVGVFQVESRAQMSMLPRLKPREFYDLVIEVAIVRPGPI 615

Query: 656  --DNIVVYNNRKNGKEKIVSI-----H---PLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
              D +  Y  RKN  E +        H     +  +L +T GV ++QEQ M +A   + +
Sbjct: 616  QGDMVHPYLKRKNNIEPVEWPAPSPEHGPEDELKGILGKTFGVPLFQEQAMSLAIEAAKF 675

Query: 706  SLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            +  EAD LR+AM   +      + +++F+ G  + G  +  A   F+ +  F  YGF +S
Sbjct: 676  TPDEADGLRKAMATFRNLGTPAEYRDKFVEGMVRRGYQRDFAERCFKQIEGFGHYGFPES 735

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAA++A + Y +AW+K  +P  F AA +  +     +  +  +DAR+  ++++PP +   
Sbjct: 736  HAASFAKLVYVSAWIKWAWPDVFCAALINSQPMGFYQPAQLVRDAREHGVEVLPPDILAS 795

Query: 825  CVDFKVG-----------------------DNRIYYSLAAIKGVGTTTARHIMEASADKP 861
              D  +                           +      IKG+       ++ A A+  
Sbjct: 796  AWDCTLEKGAAYEGFRPRADKIADYANRSQWKAVRLGFRQIKGLKQVDVAVLVHARAEGA 855

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
              +  +F        + +R LE L  A A    G +R + L ++  +        ++R  
Sbjct: 856  -RTPGEFAQ----GGVPQRALELLAEADAFAGVGLTRREALWAVKGL------KGEHRAP 904

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                + A     F D++ L   +          + R        HP+  Y+P+L++ G+ 
Sbjct: 905  VQAPLLAGLP-LFEDRVALPAMAKPQD---VAEDYRTTSLSLKAHPIGFYRPMLQRRGVI 960

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              E       G  + +A +V+ +Q+  T KG  + +VT  +      A  +
Sbjct: 961  TAERLSTLKDGARVSVAGLVLIRQRPGTAKG--VVFVTLEDETGVANAVVW 1009


>gi|326773455|ref|ZP_08232738.1| DNA polymerase III, alpha subunit [Actinomyces viscosus C505]
 gi|326636685|gb|EGE37588.1| DNA polymerase III, alpha subunit [Actinomyces viscosus C505]
          Length = 1132

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/1126 (26%), Positives = 467/1126 (41%), Gaps = 146/1126 (12%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     +  L  HS+YS L+GA   +++          A+A+TD + +   ++ +Q   A
Sbjct: 1    MTGRHRYAELHAHSAYSFLDGANEPDDLASAAVELGLEALALTDHDGVPGIVKHAQAGRA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+  I G +L +                     + +L     GY+RL+  +SR  L   
Sbjct: 61   HGLPTIHGTELTLADGS----------------HLPVLARNPTGYRRLVSAISRHNLDAG 104

Query: 125  GKQSVRICLSWLQ-----------EIGTEGLIMLTGGSSGPI------DRAFFFNSSQVA 167
             +Q     L  L            E      ++LTG ++GP+       R       + A
Sbjct: 105  QRQEPAHDLPTLASALRSDPTGQTEAAAGTCLVLTGTANGPLRRALGDPRRPDAWDLKAA 164

Query: 168  EKRLLTFKKLF--GDR--------------------LYVNLQRHRGY-DRYRESQVVQLA 204
            +  L    +LF   DR                    L V L    G  D      + +LA
Sbjct: 165  DTCLGHLTELFAAPDRGRPTSTTTGDTQVEGDAAVGLAVELTLDGGPTDAALTDALTRLA 224

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
            +TH LPLVAT         D    DVL +    T +            +L+   +M  + 
Sbjct: 225  HTHRLPLVATGAVRCARPADARLADVLTSTRLVTDLEGARGHLPPIGRWLRGAQDMALLH 284

Query: 265  SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
               P A++   E+A   +F L + AP LP     E         + L      G   R  
Sbjct: 285  RRSPGAVDLAAELAADLAFDLSLIAPDLPDADVPEG----HTPASWLCELTRQGATRRY- 339

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
             G   +   A D    L+ EL VI  + F GYFLIV   +++  ++ I +  GRGS A S
Sbjct: 340  -GTPQEHPRAWDV---LNHELEVIESLGFPGYFLIVHAIVEFCAQSGI-LCQGRGSAANS 394

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
               YAL IT +D +R  +LFERFL+P R   PD D+D    RR+EVI++V ++YG ER A
Sbjct: 395  AVCYALGITAVDAVRHQMLFERFLSPGRAGYPDIDLDIEACRREEVIQHVYSRYGRERAA 454

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDSRFREARL 503
            Q+    S + ++A+RD  RAL  P    D   K +       P  L              
Sbjct: 455  QVANVISYRPRSAVRDAARALGHPAGVQDAWAKQMERWTSVRPGGLSG-----------Q 503

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563
             D   + +L+I++KL  L RH   H  G+V+  RP++++ P+      +  V Q++    
Sbjct: 504  NDEVPEPVLDIAEKLLRLPRHLGVHPGGMVLCGRPVTEVCPVRWAAMDNRSVLQWDKDDC 563

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQR------------------GVKVDLSLIPFDD 605
             +AGL+KFD LGL  LT L+ +   LAQR                  G    L  +P +D
Sbjct: 564  AEAGLVKFDLLGLGALTALRLAFTTLAQRGQAVPDAVTEGELRTSQSGRPWGLHTLPEED 623

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNN 663
               Y LLT   T+G+FQ+ES      L  ++P    DI+  V+L RPGPI    +  Y  
Sbjct: 624  PAVYRLLTAADTVGVFQVESRAQMATLPRLRPQTFYDIVVEVALIRPGPIQGDAVNPYIR 683

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R+ G+E++  +H  + P L +T GV ++QEQ+MQIA   +G+S +EAD LR+AM  K+  
Sbjct: 684  RRLGREEVTYLHDSLKPALTKTLGVPLFQEQLMQIAVDAAGFSPAEADSLRQAMGAKRSI 743

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E MD  +++ I+G    GI +  A  I+  L  FA++GF +SHA ++A + Y +AW+K  
Sbjct: 744  ERMDALRDKLIAGMRSRGIDEPTAETIYSKLRSFAEFGFPESHAFSFAYLVYASAWLKAR 803

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--------- 833
             P +F A  +  +       +    DAR+  ++++P  VN       V            
Sbjct: 804  KPEDFYAGVLAAQPMGFWSPQSLVADARRHGVRVLPADVNRSLAQATVEQREDHQGAGPS 863

Query: 834  ----------------------RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
                                   +   LA IKG+G   A+ I+    A  P+  L D   
Sbjct: 864  DQWEPLRPHPAAPSSLDIHDDLAVRLGLAPIKGLGERAAQAIVTERCAHGPYRDLADLAR 923

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK-----HEN 925
            RV     +R  LESL  +GALD  G  R Q L +   +                      
Sbjct: 924  RVSL---SRSRLESLAVSGALDSLGVERRQALWAAGVLSDEHGRRRGASRQGPEVWCQPT 980

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            +     G+ +               R   +  + G    G PL + +  L   G+    +
Sbjct: 981  LPGTAVGSQA-----PTLPTMTDRERQAADLSLTGVSTQGSPLRLLRASLTADGVLSAAD 1035

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                  G+ +R+A +V  +Q+  T  G  + ++   +         
Sbjct: 1036 LADQEHGSRVRVAGVVTHRQRPHTASG--MIFLNLEDETGLLNVAC 1079


>gi|91976380|ref|YP_569039.1| error-prone DNA polymerase [Rhodopseudomonas palustris BisB5]
 gi|123762868|sp|Q139V1|DNAE2_RHOPS RecName: Full=Error-prone DNA polymerase
 gi|91682836|gb|ABE39138.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB5]
          Length = 1110

 Score =  747 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/1071 (23%), Positives = 437/1071 (40%), Gaps = 100/1071 (9%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K P++  + V +++S LEG     + + + +     AI I D N L   +    +     
Sbjct: 2    KVPAYAEIGVTTNFSFLEGGSHPQDYVHEASRLGLEAIGIADRNTLAGVVRAYSE----- 56

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
                     + D+    ++    +  F    P ++        Y RL  L+S   L    
Sbjct: 57   -------LGNEDLIHKPRLLIGARLVFADGTPDVLAYPVDRAAYGRLCRLLSVGKLRGA- 108

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            K    + ++ L E  ++GL          +    +   +      L     L    +++ 
Sbjct: 109  KGECHLAVADL-EAFSQGL--------SLVLMPPYRFQASAIAAALQRLTALESGGVWLG 159

Query: 186  LQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-K 243
            L   +RG D+ R +++ ++A+   +P +ATN+ L+   E     DVL  V   T + +  
Sbjct: 160  LTPYYRGDDKRRLARLKRVAWAARVPGIATNDVLYHHPERRALQDVLSCVREKTTIDKIG 219

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R     + +LK  +EM  +F   P+A+  T+  A   SF L       P          
Sbjct: 220  RRLEANAERHLKPAAEMARLFRADPDAIAETLRFAAGISFTLDELKYHYPDEPVPPG--- 276

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             K  +  L +    G+      G   K          +D EL +IA   ++ YFL V D 
Sbjct: 277  -KTAQQHLEDLTWEGVAEYFPAGISDK------LHATIDKELGIIAHRGYAQYFLTVHDI 329

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+  +I +  GRGS A S   Y L IT +DP    LLFERF++ +R   PD D+DF 
Sbjct: 330  VRYARSQDI-LCQGRGSAANSAVCYVLGITCVDPTEIDLLFERFVSEERDEPPDIDVDFE 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR+EV++Y+  +YG  R A + T    + ++A+RDVG+AL +       L   +    
Sbjct: 389  HSRREEVMQYIYRRYGRHRAAIVATVIHYRPRSAIRDVGKALGLSEDVTAALADTVWGSW 448

Query: 484  AHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
               +      ++ + ++A L   +P + R +E++ +L G  RH S H  G V+    L  
Sbjct: 449  GKGL------NEMQVKQAGLDPHNPLIGRAVELATELIGFPRHLSQHVGGYVLTQDRLDS 502

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----RGVKVD 597
             VP+           +++   I+   ++K D L L  LT ++K  D +AQ    R    D
Sbjct: 503  YVPIGNAAMEGRTFIEWDKDDIDAIKMMKVDVLALGMLTCIRKGFDLIAQHKGVRYALSD 562

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            +     DD+  Y +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGPI  
Sbjct: 563  IKSE--DDNAVYQMLQRGESIGVFQVESRAQMNMLPRLKPKCFYDLVIEVAIVRPGPIQG 620

Query: 656  DNIVVYNNRKNGKEKIVSI----H----PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            D +  Y  R+N +E +V      H      ++ +L +T GV ++QEQ M+IA   + ++ 
Sbjct: 621  DMVHPYLRRRNKQEPVVYPAPAGHAGDANELEVILGKTLGVPLFQEQAMRIAIEAAHFTP 680

Query: 708  SEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             EA+ LRRAM   +    + K + + +      G     A N FE +  F  YGF +SHA
Sbjct: 681  DEANQLRRAMATFRNVGTIGKFESKMVGNLVARGYDPVFAKNCFEQIKGFGSYGFPESHA 740

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A++A + Y +AWMK  +P  F  A +  +        +   DAR   +++ P  V+    
Sbjct: 741  ASFAKLVYVSAWMKCEHPDAFCCALLNSQPMGFYAPAQIVGDARANEVEVRPVDVSFSDG 800

Query: 827  DFKVG-----DNRIYYSLAAIKGVGTTT-ARHIMEASAD-----------------KPFD 863
               +       + +      I G          +   A                   PF+
Sbjct: 801  QCTLEERCGKHHAVRLGFRQIDGFVWADPDEERVRREAGLLPSEDWAARIVAARARGPFN 860

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            SLE F        L +R L  L  A A    G  R   L ++  +               
Sbjct: 861  SLERFAR---LTALPKRALILLADADAFRSLGLDRRAALWAVRRLPDDV----------P 907

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
              +F     +              ++     + + +     GHP++  +P+     +   
Sbjct: 908  LPLFEAASASEQLDENAAPLPQMPTAEHVVADYQTVRLSLKGHPMEFLRPLFAAERVVTC 967

Query: 984  EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 +   G  +R A +V+ +Q+  + KG  + ++T  +         +P
Sbjct: 968  RSISESRVSGQRMRCAGVVLVRQRPGSAKG--VVFITLEDETGIANLVVWP 1016


>gi|119774998|ref|YP_927738.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119767498|gb|ABM00069.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 1030

 Score =  747 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/1040 (23%), Positives = 434/1040 (41%), Gaps = 84/1040 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+YS L GA   + ++ + A     AIAITD  ++   ++    A  AGI  I
Sbjct: 2    YAELHAISNYSFLRGASHPHELVAEAARLGYSAIAITDECSVAGVVKAHMAAVDAGISLI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +                 G        + VLL ++  GY  L  L+SR       K   R
Sbjct: 62   V-----------------GSEFRLQQGTFVLLATSRAGYGALCRLISRGRRR-APKGEYR 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSS-------GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            I L  L     + +++                ++ +F    Q+A++         G R  
Sbjct: 104  INLDDLLSPLPDCVLLWRPPMPQNPGTDIAATEQHWFATQKQLAKQ----LTPWQGRRYL 159

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +  Q         +  +++L+   ++P VA  +    S       DVL  +     + + 
Sbjct: 160  LAEQCLEAAGSLWQRYLMRLSGLCDIPCVAAGDVRMHSAARQPLLDVLTCIRLGLRLDEA 219

Query: 244  -DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                    +HYL+    +   +    E + NT +IA +C F +       P  +      
Sbjct: 220  EGHLCQNAEHYLRPLGSIHRRYPQ--EWIANTQKIASQCRFSMAELRYEYPAELVPAGFS 277

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                    L  +   G   R      A        +++   EL +I  +++  +FL + D
Sbjct: 278  AS----EYLAREVAKGARRRYGLAVPA------AVKRQYLAELKLIHELEYEYFFLTIYD 327

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A++  I +  GRGS A SV  + L IT++DP R ++LFERF++ +R   PD D+DF
Sbjct: 328  IVRFARRKRI-LHQGRGSAANSVVCFCLGITEVDPTRVNMLFERFISKERHEPPDIDVDF 386

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN- 481
              +RR+EVI+Y+  KYG  R A   +  + + K+A+ +VG+ L +    V RL + I   
Sbjct: 387  EHERREEVIQYIYRKYGRHRAALAASVITYRLKSAMGEVGKVLGLDRELVARLIQGIDRR 446

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP+HP   Q               PS D    + Q L G  RH S H  G VI   PL++
Sbjct: 447  DPSHPWREQ----------LAAQLPSADMFGYLVQSLLGFPRHLSQHVGGFVISAGPLAE 496

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVP+      D  V Q++   +E  GL+K D L L  LT ++K  + +++      +  I
Sbjct: 497  LVPVENAAMEDRTVIQWDKDDLEALGLLKVDVLALGMLTAIRKCFELISRHQQPFGMRSI 556

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
              +D   Y +L+   ++G+FQ+ES      L  ++P C  D++  +++ RPGPI  D + 
Sbjct: 557  KAEDPNVYRMLSRGDSMGVFQVESRAQTSMLPRLRPACYYDLVIQIAIVRPGPIQGDMVH 616

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R+ G E +      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM  
Sbjct: 617  PFLRRRKGLEAVTYPSEAVKAVLERTMGVPIFQEQVIKLAMVAAGFSGGEADALRRAMAS 676

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K   ++   +++ + G +  G S+  A  IF  +  F +YGF +SH+A++A+++Y +A+
Sbjct: 677  WKHTGKLWSFEQKLLDGMAARGYSEDFARQIFRQIQGFGEYGFPESHSASFALLAYVSAY 736

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----NR 834
            +K ++P  F  A +  +        +  QD R+  +++    +N    D  +        
Sbjct: 737  LKLYHPAAFCCALLNSQPMGFYSPSQLLQDVRRHGVEVFDVCINHSQWDSSLVKTATGFA 796

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I      +KG+     + +++  +   F  L +    +D   L                 
Sbjct: 797  IRLGFRQVKGLKEQAMQRLVDVRSAAGFAHLSEISMLLDRHALELLAAADA-----FRLL 851

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
               R Q    L            +       +F           T       N+    + 
Sbjct: 852  SGHRFQSRWQL------------SARQASLPLFDDLPEPLKPVGTEPSLDAPNAVQCLKA 899

Query: 955  EQRVLGFYFSGHPLDVYK--PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + R  G     HP+ + +   +L K      +    T  G  + +A +V  +Q+  T  G
Sbjct: 900  DYRSKGLSLGQHPMALLRIAGLLGK--SLTAKALENTRHGQLVTVAGVVTGRQRPGTASG 957

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
              + ++T  +         +
Sbjct: 958  --VTFITLEDETGNTNLIVW 975


>gi|257893645|ref|ZP_05673298.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,408]
 gi|293560684|ref|ZP_06677168.1| DNA polymerase III subunit alpha [Enterococcus faecium E1162]
 gi|257830024|gb|EEV56631.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,408]
 gi|291605358|gb|EFF34808.1| DNA polymerase III subunit alpha [Enterococcus faecium E1162]
          Length = 1027

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/945 (32%), Positives = 487/945 (51%), Gaps = 52/945 (5%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            ++       GYQ+L++L SR  + +            L E+     +     ++  +  A
Sbjct: 1    MLAYAKDEIGYQQLMKLSSRKMIQE---------KLELAEMTETDHLAFVVPANHSVSEA 51

Query: 159  FFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNS 217
              FN             + +F    Y+ L  +   D+  E    Q        L A +  
Sbjct: 52   --FNKEDNFFGHWQFLLENVFTRNFYIGLTENTP-DQLPEW--YQYVIKENYSLCALHPI 106

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDR---PRVTPDHYLKNRSEMVSIF--SDLPEALE 272
              L +E+  A +V+  +   + +  ++      +T + YL +  EM+  F  + L +A+ 
Sbjct: 107  ASLQQEELFALEVMKHIKEGSQIPLENLSASLPLTANVYLLSEQEMIKRFEKAGLSQAVI 166

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
                +A   SF  Q H  +LP +         K+    LR    + +E R+         
Sbjct: 167  GAQRLAESISFEFQFHQKLLPHYPVPNG----KQAGEYLRELCYSQVERRITD------- 215

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
            + ++Y++RLD+EL+VI +M F  YFLIV D + +A +N I  G GRGS AGS+ AY L I
Sbjct: 216  YTKEYQERLDYELSVIHQMGFDDYFLIVWDVMAFAHRNKIVTGAGRGSAAGSLVAYVLEI 275

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            TD+DPL + LLFERFLNP+R +MPD D+D   +RR+EV+ YV+ KYG   +AQI TFG++
Sbjct: 276  TDVDPLEYDLLFERFLNPERFTMPDIDLDIPDNRREEVLNYVREKYGQYHMAQIATFGTM 335

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
             AK  LRD  R   +  S+ +R  K IPN     ++ QA     +  E   A      L 
Sbjct: 336  AAKMVLRDAARVFGLSQSEANRWSKAIPNQLKITLT-QAYKTSHQLVELVQASEKNQLLF 394

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            + +  LEGL RH STHAAG+VI D+ L +LVP+ R       +TQ+ M  +E  GL+K D
Sbjct: 395  KTAVILEGLPRHVSTHAAGVVISDKNLLELVPLQRGSDEAF-LTQYTMNEVEAIGLLKMD 453

Query: 573  FLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGL+ L+++  +L  + +  G ++ L  IP +D +T  L     T G+FQ ES+G+R  
Sbjct: 454  FLGLRNLSIIDFTLKAVKRVEGYEIRLKEIPLNDAKTLLLFQRGETSGVFQFESAGIRNV 513

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            L  + P+ IEDI A+ +LYRPGP+ NI  +  RK GKE I      + P+LK T GVI+Y
Sbjct: 514  LRRLDPENIEDIAAVNALYRPGPMQNIDTFIARKKGKEAIRYPDDSLIPILKNTYGVIVY 573

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQ+MQIA  ++G++L ++D+LRRA+ KK K+ +D++K  F+SGA + G S+  A  ++E
Sbjct: 574  QEQIMQIASTMAGFTLGQSDILRRAVSKKKKDVLDEEKSHFVSGALQQGYSEKTAATVYE 633

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             + KFA+YGFN+SHA AY+ + +Q A++K H+P  F  + M     N  K+K++  +AR+
Sbjct: 634  YIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHPGAFFTSLMNSVRHNTSKLKEYIAEARK 693

Query: 812  FNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFC 869
              +++  PS+N     F+ V    I + L AIKG+       I+     + PF S++ F 
Sbjct: 694  NKLKLSSPSINQSNSSFELVNKEEIRFGLTAIKGIRRDFVEDILNERKQNGPFQSVDQFL 753

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             R+D + L   +L+SL   G  D    +R QL+  L+   +   +     +    ++   
Sbjct: 754  IRIDKRWLKLELLQSLTAVGVFDELSPNRKQLMLDLEGKIQNIVY-----SGGSLDLLGI 808

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
                    +  E+ +      R + E+  LG Y SGHP + +     ++ +    + +  
Sbjct: 809  MA------LKEEEVADYTLEERLKLEEEYLGIYLSGHPAEGF----DRLRLAKQVQLITD 858

Query: 990  I-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            I     + L  M+   ++ +T+KG  + +V  ++ + E     FP
Sbjct: 859  IVPNQPVNLLVMIKEVREIRTKKGELMAFVEGTDSSGEISVTVFP 903


>gi|86359661|ref|YP_471553.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42]
 gi|86283763|gb|ABC92826.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42]
          Length = 1150

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/1070 (24%), Positives = 454/1070 (42%), Gaps = 80/1070 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+F  +   +++S LEGA     ++ + A  +   + I D N++   +     A A  I+
Sbjct: 4    PAFFEIGARTNFSFLEGASGPEEMVVQAAHLRLGGLGIADRNSVAGVVRAH--AQALQIE 61

Query: 69   PIIGCQLDIDMQ--------DNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRM 119
                 + + D Q        D +++    +  F    P I+   S   G+  L  L+S  
Sbjct: 62   EKYKNRHEADFQTWEGEEILDPIRVQPGARLVFSDGTPDILAYPSNRRGWANLCRLLSAG 121

Query: 120  YLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             L ++  K +  +  +   E G E ++ +    +               E  L  F++ F
Sbjct: 122  NLKEEAVKGTCILTETEFMEWGDEMMLAVVPDRT----LVDHQRGQSALEDYLERFRRRF 177

Query: 179  GDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
                ++ L   + G DR   + +  LA  + +PL+ATN  L+   E     DV++A+   
Sbjct: 178  RKAFFMALAPAYDGRDRQVFAVLATLAARNRVPLIATNQPLYHHPERRPLSDVVIAIREH 237

Query: 238  TVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              +SQ         + YLK   EMV IF D P A+ENT     R SF L+      P   
Sbjct: 238  VQISQAGFLLAPNAERYLKGSREMVRIFRDYPGAIENTQAFFGRLSFSLKELEHNYPP-- 295

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                +D  +  +  L     AG   R  +G   K        +++D+EL +I    ++ Y
Sbjct: 296  ---ENDPGETPQETLERLTRAGAIKRYPEGVPPK------VVKQIDYELKLIGDKNYASY 346

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V   IQ A+ +   +  GRGS A SV  Y L IT+++P + +LLF+RF++ DR   P
Sbjct: 347  FLTVHRIIQHARYDLKVLCQGRGSAANSVICYCLEITEVNPEKSTLLFDRFISMDRDEPP 406

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  DRR+EVI+++   Y  E         + + ++A R+V +A  +       + 
Sbjct: 407  DIDVDFEHDRREEVIQFIYRTYKREHAGLTAGVTTYRTRSAGREVAKAFGLSEDVQSAIS 466

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
             L+       +S +    D++     + DP    +L+ + +L G  RH + H  G VI  
Sbjct: 467  SLVWGWSEDNLSDR----DAKAAGLDVKDPVTQNVLKYASELLGFPRHLTQHVGGFVITR 522

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
              L ++VP+ +    D  + +++   ++   ++K D L L  LT L+K+   L       
Sbjct: 523  DRLDEVVPIMKTAMPDRYMIEWDKDDLDNVKILKVDILALGMLTCLRKAFSLLELHYDVK 582

Query: 597  ----DLSLIPFDDH--ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                DL      +     Y ++    TLG+FQ+ES      L  ++P    D++  V++ 
Sbjct: 583  KALADLGNREHGEEGRPVYEMMGRADTLGVFQIESRAQMSMLPRLKPKIFYDLVIEVAIV 642

Query: 651  RPGPI--DNIVVYNNRKNGKE---KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            RPGPI  D +  Y  R+  +     I      ++ +L+ T GV ++QEQ MQIA   +G+
Sbjct: 643  RPGPIQGDMVHPYLKRREQRARNIPIDYPSKELEAVLERTLGVPLFQEQAMQIAITAAGF 702

Query: 706  SLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
              +EAD LRRAM   K    +   ++RFI G          A   F  +  F +YGF +S
Sbjct: 703  KPAEADKLRRAMATFKRTGTIGDFEKRFIEGMVSKNYDPEFAKQCFNQIRGFGEYGFPES 762

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAA++A++ Y ++W+K +YP  F AA +  +        +  +DAR+  ++I+P  +N  
Sbjct: 763  HAASFALLVYASSWLKAYYPDVFCAAMLNSQPMGFYAPAQLVRDAREHGVKILPVDINES 822

Query: 825  CVDFKVG----------------------DNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
              D  +                        + +      IKG+ +     +++      +
Sbjct: 823  DWDCTLEEASFDREAIDFRHGEMGGIIKTRHAVRLGFRQIKGLSSDDMERLVDNRGQG-Y 881

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             S+ D   R     L + V+E L  A A      SR + L ++  +       +     +
Sbjct: 882  GSVRDLWLR---SGLQKSVIERLADADAFRSIHLSRREALWAVRAL-------DVKSAAE 931

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
               +F   +          K        +   + R L      HP+   +  LRK GI  
Sbjct: 932  ELPLFEQVRHLDLQPEPAAKLPDMLPGEQVIEDYRYLSLSLKAHPVSFLREELRKAGITR 991

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + +    G  + +A +V+ +Q+  + KG  + ++T  +      A  +
Sbjct: 992  NVDLLTVPNGKRVTIAGLVLVRQRPGSAKG--VIFMTLEDETGVANAIVW 1039


>gi|228476876|ref|ZP_04061521.1| DNA polymerase III subunit alpha [Streptococcus salivarius SK126]
 gi|228251450|gb|EEK10595.1| DNA polymerase III subunit alpha [Streptococcus salivarius SK126]
          Length = 1036

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/1025 (28%), Positives = 495/1025 (48%), Gaps = 100/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS ++  + LN+ + +       A+ + D +NL++A  F+Q A   G++P+
Sbjct: 2    FAQLDTKSVYSFMDSVVDLNSYVARAKELGYQALGLMDRDNLYAAYHFAQLASRNGLRPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + ++  +                    LL    +GY+ L++L + +     G++   
Sbjct: 62   IGMEANLFYEGRK-------------IPFRLLAKNNQGYKNLMKLATELSS---GQREFT 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                +L +I    LI+ +                         +                
Sbjct: 106  AFSDYLNDIA---LILPS-----------------------EDW----------EPGMTL 129

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G + +   +        + P+V  +   +    D     +L A++ +  +S+     +  
Sbjct: 130  GSEVFIGVRPEDAGKEFDYPVVPLHTVRYFENSDRSTIQMLHAISQNVSLSEASICPMN- 188

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               L +  E+ S +SD+PEAL N  ++    ++        LPRF      +      ++
Sbjct: 189  -QLLFSPQEIESAYSDIPEALNNLEQLVSDITYQFDTDL-KLPRF------NRDMPAVDQ 240

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A +GLE        +K   +  Y++RLD EL++I +M F  YFLIV D +++ +  
Sbjct: 241  LRQLAQSGLE--------SKKLTSPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSR 292

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ AY L IT IDP++  LLFERFLN +R SMPD DID     R E 
Sbjct: 293  GYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNEERYSMPDIDIDLPDIYRSEF 352

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+++YG +  AQI+TF +  AK A+RDV +       ++ +L K I           
Sbjct: 353  LHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKISFRDNLT---S 409

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+         R  EI++ +EG  R  S HAAGIV+ D  L+  +P+     
Sbjct: 410  VYEKNMSFRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--KAG 467

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + L +   + +D+  I  +D +T 
Sbjct: 468  EDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGITIDIKSIDLEDPQTL 527

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E +G    L+ ++P   E+++A  SL RPG  D    +  RK GKE
Sbjct: 528  ALFASGKTKGIFQFEQAGAINLLKRIKPAKFEEVVATTSLNRPGASDYTDNFIARKYGKE 587

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  I P++ P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM K  
Sbjct: 588  KVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFTLGKADLLRRAMSKKDANEMSKMS 647

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E+F+ G+ + G    IA  +F ++AKFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 648  EQFMEGSRQLGRDPQIAERLFSMMAKFAGYGFNRSHAYAYSALAFQLAYFKTHYPQIFYD 707

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      + +DA +    +    +N      K+ D +I   L  IKG+    
Sbjct: 708  VMLNYSSSD------YIKDAIENGFSLARLDINRIPYLDKISDGKIVLGLKTIKGLPRDF 761

Query: 850  ARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            +  I+E    +  + S+EDF +R+ SK     +L  L+  G  D F  +R +++ +L+N+
Sbjct: 762  SLWIIEDRKQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDIFEPNRQKIIGNLNNL 821

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++FA    ++ D      +   + + R+  EQ +LG   S HPL
Sbjct: 822  FTFV--------NELGSLFAESSYSWVD------YEDYSQTDRYNLEQELLGVGLSPHPL 867

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                 + +KM  + Y+            +   + S +  +T+KG ++ ++  ++   + +
Sbjct: 868  ----HLAQKMASRPYQPISDLTVNTKATVLVQLESVRIIRTKKGDQMAFLNVTDGINKLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|295395748|ref|ZP_06805937.1| DNA-directed DNA polymerase III alpha subunit [Brevibacterium
            mcbrellneri ATCC 49030]
 gi|294971409|gb|EFG47295.1| DNA-directed DNA polymerase III alpha subunit [Brevibacterium
            mcbrellneri ATCC 49030]
          Length = 1032

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/1034 (26%), Positives = 440/1034 (42%), Gaps = 69/1034 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++S L+GA     ++    A    A+A+TD N L+ A+ F+Q+A   G+  +
Sbjct: 2    YAELHAHSNFSFLDGASDPEELVHAAHAAGLSALALTDHNGLYGAVRFAQEAQRVGMPTV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +D+   +          P    +++L  + +GY++L   +S+ Y   + K    
Sbjct: 62   FGAELSLDLAHKIP-----GQKDPQATHLLVLARSVDGYRQLSRAISQGYEHGE-KNRPI 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L  L  +      +LTG   GP+               L    +LF DR+ V L R  
Sbjct: 116  LHLEELAAL-DPDWYILTGCRKGPL--IPHLGDPDGGVSALRGLTELFPDRVVVELTRFG 172

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRV 248
               D  R   +  LA    LP VATN   +     Y    V  A+     + +       
Sbjct: 173  HPTDDARIEHLTHLATRASLPTVATNAVHYAYRSGYRGAHVRAAIRSHASLDELAGWLPA 232

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                Y++   +M   F   P  +E    I + C+F L      LP+       D     +
Sbjct: 233  DATAYVRTPHDMRERFG--PGPVETAHRIGQECAFELSAAQVGLPQAPVPPGRDA----D 286

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR    AG   R                +++D EL  I  M F+GYFLIV D  ++  
Sbjct: 287  EHLRELVYAGARRRYGD-----RSEHPRAWEQIDSELATITSMGFAGYFLIVEDIARFCH 341

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N I    GRGS A S   + L IT +D ++F LLF+RFL+P R   PD DID    RR+
Sbjct: 342  TNGI-YCQGRGSAANSAVCFVLGITAVDAVKFQLLFDRFLSPQRAGYPDIDIDIESGRRE 400

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YV   YG  R AQ+    + + K+A+RD   A      Q D   K        P +
Sbjct: 401  EVIQYVYRTYGRTRAAQVANVITYRTKSAVRDAASAFGYSPGQQDAFAKTTHRGALSPDT 460

Query: 489  LQAIADDSRFREARLADPSV-DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                 D+          P V   +LE ++ L    RH   H+ G+++ DRP+  LVP+  
Sbjct: 461  -----DEP---------PHVPAPVLEAARDLHDSPRHLGIHSGGMILTDRPIYDLVPIEP 506

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                   V Q++        L+KFD LGL  L  L+   + + +             +  
Sbjct: 507  AAMEGRTVIQWDKDDSAAMNLVKFDLLGLGMLEALRHMNELVKKHTGHAVDRGNIPQEDG 566

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRK 665
             Y +L     +G+FQ+ES      L  M+P    D++  ++L RPGPI   ++  Y  R+
Sbjct: 567  VYDMLCRADAVGVFQVESRAQLSTLPRMRPRNFYDLVVEIALIRPGPIQGESVHPYLRRR 626

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE- 724
             G E +   HP +   L +T GV ++QEQ+MQIA  ++G+S ++AD LRRAMG +     
Sbjct: 627  QGVEPVTYAHPALKNSLGKTLGVPLFQEQLMQIAIDVAGFSGADADELRRAMGARRSART 686

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M   +ERF  G S  G+  T+A  IF  +A FADYGF +SHA ++A + Y++AW K  + 
Sbjct: 687  MAALEERFYQGCSARGVEPTVAREIFGKIAAFADYGFPESHALSFANLVYESAWFKYRHH 746

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-------FKVGDNRIYY 837
              F AA +  +       +    DAR+  + I    +N              VG   I  
Sbjct: 747  AAFTAALLRSQPMGFYSPQSLIADARRHGVNIRAVDINLSHEHSDLEPDPQSVGGFAIRL 806

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L ++KG+    A  ++     +P+ S+ED   +     +    LE+L  AGA + FG  
Sbjct: 807  GLTSVKGISAEVATQVVTHRT-QPYTSIEDLACKT---GIPSDALEALATAGAYESFGVD 862

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R Q L    ++               + +         +   L   +  ++++    E  
Sbjct: 863  RRQALWIAGSL----------AGAGPDTLPG--TSAVMEAPALPLMTEFDTTL---AELF 907

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G   +G+P +  +  L   G+    +++    G  I +A +V  +Q+ KT  G  + +
Sbjct: 908  STGMTVNGYPTEHLRAALNARGLASTRDAMNAQAGARITVAGIVTHRQRPKTTTG--VTF 965

Query: 1018 VTFSEPAKEYEANF 1031
                +         
Sbjct: 966  FNIEDEFGMLNVVC 979


>gi|103488257|ref|YP_617818.1| DNA polymerase III, alpha subunit [Sphingopyxis alaskensis RB2256]
 gi|98978334|gb|ABF54485.1| DNA polymerase III, alpha subunit [Sphingopyxis alaskensis RB2256]
          Length = 1092

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/1051 (24%), Positives = 441/1051 (41%), Gaps = 86/1051 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-------SQK 61
            P F  L   ++YS L GA     ++ +        I I D N++   +          + 
Sbjct: 8    PGFAELVAATNYSFLRGASHPAEMVKEALDLGMSGIGIADRNSVAGVVRALTGLRKLHED 67

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   GI          ++     +           P IV   +T  G+ RL  +++    
Sbjct: 68   AAEEGI----------ELPPFQLVVGARLVFDDGTPDIVAYPTTRHGWGRLTRMLTIGNR 117

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                   V    + L       LI + G               +  E  L   KK+  + 
Sbjct: 118  RTTKGGCVMKLKNLLIHCQDMILIAMAG---------------EKDEAVLRRLKKIAPNA 162

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            L++     R G DR   +++  LA    +P++ATN++L+ + E    HDV+  +   T +
Sbjct: 163  LWLGATMPREGSDRRHLARLQSLADRVGIPMLATNDALYATREQRPLHDVVTCIREGTTL 222

Query: 241  SQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +  R  R   + +LK+  EM  +F   P A++ ++ I  R  F L+      P     E
Sbjct: 223  HEAGRLLRANGERHLKSPQEMRRLFRACPSAVDESIRILDRIGFSLRDLEYEYPHEPVPE 282

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              D Q    + L +  +        QG        Q +++ LD EL++I +  F+ YFL 
Sbjct: 283  GWDPQ----SWLEHMVLDAANRLHPQGL------PQRWQEVLDEELSLIRKCNFACYFLT 332

Query: 360  VADFIQWAKKNNIPV-GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V D +++A+  + P+   GRGS A S+  Y L IT IDP+  +LLF RFL+ +R   PD 
Sbjct: 333  VHDIVKYARSQDPPILCQGRGSAANSLVCYLLEITSIDPIANNLLFTRFLSEERREPPDI 392

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF  +RR+EV++Y+  ++   R     T    + ++A+R+VG+AL +      RL   
Sbjct: 393  DVDFEHERREEVMQYIYRRHTRRRAGIAATVIHYRPRSAVREVGKALGLSEDVTARLADT 452

Query: 479  IPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                    + ++      RF EA L      + RL  I  +L    RH S H  G V+ +
Sbjct: 453  SWGSWGSEMPVE------RFVEAGLDPEQDDMARLQWIVAQLLTFPRHLSQHVGGYVLTE 506

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-K 595
              L + VP++    ++    +++   +++  L+K D L L  LT ++K  D +   G+  
Sbjct: 507  DRLDETVPIHNAAMAERTFIEWDKDDLDELRLMKVDVLALGMLTCIRKCFDLMRLHGLGD 566

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             DL  +P +D   Y +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 567  HDLKSVPPEDPVVYDMLCKGDSIGVFQVESRAQINMLPRLRPRKFYDLVIQVAIVRPGPI 626

Query: 656  --DNIVVYNNRKNGKEKIVSIH------PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
              D +  Y  R+N +EK             ++ +L +T+GV ++QEQ M++A + +G+S 
Sbjct: 627  EGDMVHPYLRRRNKEEKPELPLRAGAEANELEAVLGKTEGVPLFQEQAMKLAIVAAGFSP 686

Query: 708  SEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             EA+ LRRAM   +    + + +E+ I G  + G     A   F+ +  F  YGF +SHA
Sbjct: 687  DEANGLRRAMATFRNVGTIHQYREKMIGGMVRRGYEADFAARCFKQIEGFGSYGFPESHA 746

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
             ++A + Y ++W+K H+P  F    +  +        +  +DAR+  +++    VN    
Sbjct: 747  QSFAKLVYVSSWLKCHHPAVFTCGLLNSQPMGFYAPAQLVRDAREHGVEVREVDVNASHW 806

Query: 827  DFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
            D  +     G   +      + G     A  I+ A     F S+ED   R    KL  R 
Sbjct: 807  DNGLERRADGSLALRLGFRQVDGFREAWADQIVAARTTS-FASVEDLARRA---KLPPRA 862

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            L  L  A A    G  R           + A W  +        +F              
Sbjct: 863  LRLLAEADACRSMGLDR-----------RPALWEARRVRQGVLPLFGAAGANELGHEEDA 911

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                         + +       GHP+   +    + G+    E  A   G  +R A +V
Sbjct: 912  ALPPTPMVEHVLTDYQTTRLSLKGHPMAFLRRDFARAGVLSAVEVAAAKNGAIVRTAGVV 971

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +Q+    KG+ I ++T  + +       +
Sbjct: 972  LIRQRPG--KGNAI-FITIEDESGIVNILLW 999


>gi|327469649|gb|EGF15118.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK330]
          Length = 1069

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/1025 (29%), Positives = 493/1025 (48%), Gaps = 102/1025 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36   IQLDTKTVYSFMDSLVPIKKYVQKAKDLGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G         +L +    K        + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 96   GL--------DLSLIKAEKE-----LHLRLLALDSQGYRNLMK-VSTLKMMGQ------- 134

Query: 132  CLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              +W       +GL ++    +G            VA+  L                   
Sbjct: 135  -KNWEDFQHLFKGLAVIVPAFNG------------VADLDL------------------- 162

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D Y              P +  +   +    D E   +L A+  +  + +     +  
Sbjct: 163  GLDFYVGVFPATPKQEFGRPTLPLHTVRYFDTGDLETLQMLRAIRENASLREIG--SLPN 220

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              +L     +   F    PE+L N  ++ R   + +      LPRF      + ++    
Sbjct: 221  HEFLLTPDALAGAFKGTFPESLANLEKLVRHVHYDIN-RELKLPRF------NRERPAVE 273

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ELR ++ AGL+ R        G   + Y++RLD EL VI +M F  YFLIV D +++ + 
Sbjct: 274  ELRERSEAGLKKR--------GLTGKLYQERLDQELAVIHQMGFDDYFLIVWDLLRFGRS 325

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E
Sbjct: 326  QGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPE 385

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +     
Sbjct: 386  FIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT--- 442

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+    
Sbjct: 443  SAYEKNMGFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL--KY 500

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D ET
Sbjct: 501  GEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIAEIDLEDAET 560

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G 
Sbjct: 561  LKLFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGL 620

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM   
Sbjct: 621  EQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMHHM 680

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 681  QEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDVFF 740

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA  F+ +  P S+N      K  D +I+  L  IKG+   
Sbjct: 741  DVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLPRD 794

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+
Sbjct: 795  LAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNL 854

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +A        ++  ++FA    ++++          + + +FE EQ ++G   S HPL
Sbjct: 855  FVFA--------DELGSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSDHPL 900

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                  L K   + +         +  R+ A V + +  +T+KG  + ++  S+  K+ +
Sbjct: 901  ----VKLAKEADQPFSWISELTENSRARILAQVQTIKTIRTKKGENMAFLQVSDTKKKLD 956

Query: 1029 ANFFP 1033
               FP
Sbjct: 957  VTLFP 961


>gi|257068737|ref|YP_003154992.1| DNA polymerase III, alpha subunit [Brachybacterium faecium DSM 4810]
 gi|256559555|gb|ACU85402.1| DNA polymerase III, alpha subunit [Brachybacterium faecium DSM 4810]
          Length = 1141

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/1083 (24%), Positives = 454/1083 (41%), Gaps = 99/1083 (9%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC--- 63
            ++  +  L  HS +S L+GA S  ++  + A     AIA+ D + L  A+ F+  A    
Sbjct: 47   RAVDYAELHAHSHFSFLDGASSPEDMAGQAARLGLGAIALVDHDGLPGAVRFATAAAEAG 106

Query: 64   -----AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
                  A +   +           +    +   P P    +++LV    GY++L   ++R
Sbjct: 107  IATVFGAELSLGLEPGAVTASSTPVVSAPRTGVPDPDGEHLLVLVRDTAGYRQLSAAIAR 166

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEG-LIMLTGGSSGPIDRA--------FFFNSSQVAEK 169
             +L  + K   R  L+ L  +  EG  ++LTG   G + RA            ++  A  
Sbjct: 167  AHLDSRQKGVPRYRLAELSRLAREGHWLILTGCRKGAVTRAAAEHLEAGDLDAAAHAAAA 226

Query: 170  RLLTFKKLF-GDRLYVNLQRHRGYDRYRESQVVQLAYTH----------ELPLVATNNSL 218
             +    +LF    + V L    G +       +                 LPLVA+ N+ 
Sbjct: 227  AITRLVELFGPGNVAVELMVGGGGEADELHDALAQGARLVRESHGLDEISLPLVASTNAH 286

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            +    D    D   A+     +++ D    +   +L++  EM  +    P A+     + 
Sbjct: 287  YARPSDRRLADTHAALRAGVPLAEADPYLSSRPAHLRSGEEMAQLLPRYPGAIAQAARLG 346

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA-VAGLEVRLAQGAIAKGYHAQDY 337
            R C+  L++ AP LP F      D    E + L     + G E    +    +       
Sbjct: 347  RDCALDLRLLAPDLPPFPVPAGHD----EASWLVELVEIEGRERYGPRPTPERPEQVPGA 402

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
              ++D EL VI  ++F GYFLIV + + +     I +  GRGS A S   YAL IT ++P
Sbjct: 403  WAQIDHELKVITDLRFPGYFLIVHEIVDFCAGEGI-LAQGRGSAANSAVCYALGITAVEP 461

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
            +   LLFERFL P+R   PD DID   DRR+EVI++V  +YG E  AQ+    + +AK A
Sbjct: 462  VGHQLLFERFLAPERDGPPDIDIDIASDRREEVIQHVYERYGRENAAQVANVITYRAKLA 521

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
            +RD  RAL       D   K +               +  F   R AD     ++E++ +
Sbjct: 522  VRDAARALGYDTGAQDAFAKRV---------------ERSFSALREAD-VPGDVVELAHR 565

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            L    RH   H+ G+V+ DRP+ ++ P+     +D  V Q++     +AGL+KFD LGL 
Sbjct: 566  LRDAPRHLGIHSGGMVLCDRPVIEVCPVQWAAMADRSVLQWDKDDCAEAGLVKFDLLGLG 625

Query: 578  TLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT L  +L  +A+      +L  +P +D   Y +L    ++G+FQ+ES      L  ++
Sbjct: 626  MLTALDHALRIIAEHHGQHFELHTLPQEDPAVYDMLCAGDSVGVFQVESRAQISTLPRLR 685

Query: 637  PDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
            P    D++  V+L RPGPI       Y  R+N +E +  +HP ++  L  T G+ ++QEQ
Sbjct: 686  PREFYDLVVEVALIRPGPIQGGSVHPYIRRRNKEEPVTFLHPRLEKSLGRTLGIPLFQEQ 745

Query: 695  VMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            +MQ+   ++ ++ ++AD LRRAM  K+  ++M +  +   +G +++GI    A  +   L
Sbjct: 746  LMQMVVDVADFTPAQADQLRRAMGSKRSTQKMLELSDALFAGMAEHGIVGEDAEAVHRKL 805

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA+YGF +SHA ++A + Y ++++K HYP  F A  +  +       +    DAR+  
Sbjct: 806  LAFANYGFPESHAYSFAYLVYASSYLKCHYPAAFTAGLLRSQPMGFYSPQSLVADARRHG 865

Query: 814  IQIMPPSVNTPCVDFKVGDNRI------------------------YYSLAAIKGVGTTT 849
            +    P V        +  +                             L  ++G+ T T
Sbjct: 866  VLTRGPDVLASRARTDLETDAEHRGYRIDPPGEQIQGEAAAQGPAIRLGLDQVRGISTET 925

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A  I+        F S+ D   RV       R LE+L  AGALD    SR Q        
Sbjct: 926  AEEIVAERGRGGQFTSVPDLARRVRLTA---RQLEALATAGALDALASSRRQ-------- 974

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  +        E+         +           + +     +    G     HP+
Sbjct: 975  -----ALWAAGAAAQES--PETLPHLAVGAQAPMLPGMSDAEIATADAWATGITLDEHPM 1027

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             + +  L   G+     +        IR+A ++  +Q+  T  G+ + +++  +      
Sbjct: 1028 ALVRQELTADGVLAIAATREAEDSRRIRVAGVITHRQRPATA-GN-VTFLSLEDETGILN 1085

Query: 1029 ANF 1031
               
Sbjct: 1086 VVC 1088


>gi|198283654|ref|YP_002219975.1| DNA polymerase III subunit alpha [Acidithiobacillus ferrooxidans ATCC
            53993]
 gi|198248175|gb|ACH83768.1| DNA polymerase III, alpha subunit [Acidithiobacillus ferrooxidans
            ATCC 53993]
          Length = 1020

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/1032 (27%), Positives = 456/1032 (44%), Gaps = 79/1032 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+ S L GA ++ ++LD+  A    A+AIT+  +L SA      AC  G  
Sbjct: 7    PEYAELHCLSALSFLRGASAVEDLLDRAQALGYRALAITEECSLGSAARAHSHACNIGFP 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY-LLDQGKQ 127
             I+G                 +      P IVLLV   +GY  L   ++R      +G  
Sbjct: 67   LILGS----------------EIALTDGPRIVLLVQEHDGYVALSRFITRARGRAGKGHY 110

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+  + L E+     I+L        D          A   +     L  + +++  +
Sbjct: 111  QARM--ADLPELVGCLAIILP-------DSQSLRFDVAGA---IAVRDCLGAENVWLGAE 158

Query: 188  RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
              RG D   +  +V++      +P +A  +            DVL A+     ++     
Sbjct: 159  LLRGGDDAAQLREVLEQGRALNIPCLACGDVHMDRRSRRFLQDVLTAIRLRRPLADLGWA 218

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +L+ RS +  I+   PE L  T+ +A RC F L       P           +
Sbjct: 219  LARNGERHLRPRSVLAEIYP--PELLVETLRVAERCQFSLDSLVYRYPDGACP----ADQ 272

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            + ++ L   A  GL+ R  QG             +L+ EL ++  + ++GYFL V D ++
Sbjct: 273  QRDDYLAELARQGLQRRYPQGVAT------VVATQLEAELALVRELDYAGYFLTVHDIVR 326

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK   I +  GRGS A SV  YAL IT++DP R  LLF RF++ DR   PD D+DF  +
Sbjct: 327  FAKGRGI-LCQGRGSAANSVICYALGITEVDPSRMQLLFARFISRDRREPPDIDVDFEHE 385

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV   YG +  A   T    + ++A+RD  RAL     ++ RL + +      
Sbjct: 386  RREEVIQYVFQHYGRDHAALTATIIHYRPRSAMRDAARALGFAPVEIQRLTQGLAWWDGR 445

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  + + +    +      P++ RL+ +   L G  RH S H  G+V+   PL+ LVP+
Sbjct: 446  QIRPERLQE----QGFDPTSPTIQRLVTVVNALVGFPRHLSQHVGGMVLSATPLNALVPI 501

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                 ++  V Q++   ++  G++K D L L  L++L+++LD L      + L+ IP +D
Sbjct: 502  EPAAMAERAVIQWDKDDLDVLGILKVDILALGMLSVLRRALDDLG-----MTLADIPAED 556

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
              TY +L    +LG+FQ+ES      L  ++P C  D++  V++ RPGPI  D +  Y  
Sbjct: 557  PATYAMLQRGESLGVFQVESRAQMSMLPRLKPRCFYDLVIEVAIIRPGPIQGDMVHPYLR 616

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+ G E +    P +  +L+ T GV I+QEQVMQIA   +G+S  EAD LRRAM   + K
Sbjct: 617  RRQGLEPVRYPGPEVKKVLERTLGVPIFQEQVMQIAIDAAGFSGDEADGLRRAMAAWRRK 676

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +    +R I G    G S+  A  + + +  FA+YGF +SHAA++A++ Y +AW+K H
Sbjct: 677  GHLGPYSDRLIRGLRLRGYSEAFAQRLCQQIQGFAEYGFPESHAASFALLVYASAWIKCH 736

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            +P  F AA +  +        +  Q+AR+  ++++   +     D KV D  +   L  I
Sbjct: 737  HPAIFAAALLNSQPMGFYAPAQIVQEARRCGVEVLSVDICHSDWDCKVQDGALRLGLCLI 796

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KG+    A  ++   A     +L     R     L+   L  L +AGAL      R Q L
Sbjct: 797  KGMSPKEAERLLHWRAQGG--ALHSEALR-HGLGLSAAALHQLAYAGALSSLHGDRHQAL 853

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSSVRFENEQRVLGF 961
             ++                   ++                    E S+     + + LG 
Sbjct: 854  WAV-----------------QGSLPLPTALPMPVVPEQAPALPAETSAAACIADYQQLGL 896

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
                HPL   +  + + G +   E          RLA +V  +Q+  T  G+   ++T  
Sbjct: 897  SLGPHPLHFLRERIAQSGYRRIAEVRLQHHDRPDRLAGLVTHRQRPGTAHGT--VFLTLE 954

Query: 1022 EPAKEYEANFFP 1033
            + +       +P
Sbjct: 955  DESGMINVIVWP 966


>gi|218667676|ref|YP_002426285.1| DNA polymerase III, alpha subunit, putative [Acidithiobacillus
            ferrooxidans ATCC 23270]
 gi|218519889|gb|ACK80475.1| DNA polymerase III, alpha subunit, putative [Acidithiobacillus
            ferrooxidans ATCC 23270]
          Length = 1015

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/1032 (27%), Positives = 456/1032 (44%), Gaps = 79/1032 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+ S L GA ++ ++LD+  A    A+AIT+  +L SA      AC  G  
Sbjct: 2    PEYAELHCLSALSFLRGASAVEDLLDRAQALGYRALAITEECSLGSAARAHSHACNIGFP 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY-LLDQGKQ 127
             I+G                 +      P IVLLV   +GY  L   ++R      +G  
Sbjct: 62   LILGS----------------EIALTDGPRIVLLVQEHDGYVALSRFITRARGRAGKGHY 105

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+  + L E+     I+L        D          A   +     L  + +++  +
Sbjct: 106  QARM--ADLPELVGCLAIILP-------DSQSLRFDVAGA---IAVRDCLGAENVWLGAE 153

Query: 188  RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
              RG D   +  +V++      +P +A  +            DVL A+     ++     
Sbjct: 154  LLRGGDDAAQLREVLEQGRALNIPCLACGDVHMDRRSRRFLQDVLTAIRLRRPLADLGWA 213

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +L+ RS +  I+   PE L  T+ +A RC F L       P           +
Sbjct: 214  LARNGERHLRPRSVLAEIYP--PELLVETLRVAERCQFSLDSLVYRYPDGACP----ADQ 267

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            + ++ L   A  GL+ R  QG             +L+ EL ++  + ++GYFL V D ++
Sbjct: 268  QRDDYLAELARQGLQRRYPQGVAT------VVATQLEAELALVRELDYAGYFLTVHDIVR 321

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK   I +  GRGS A SV  YAL IT++DP R  LLF RF++ DR   PD D+DF  +
Sbjct: 322  FAKGRGI-LCQGRGSAANSVICYALGITEVDPSRMQLLFARFISRDRREPPDIDVDFEHE 380

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV   YG +  A   T    + ++A+RD  RAL     ++ RL + +      
Sbjct: 381  RREEVIQYVFQHYGRDHAALTATIIHYRPRSAMRDAARALGFAPVEIQRLTQGLAWWDGR 440

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  + + +    +      P++ RL+ +   L G  RH S H  G+V+   PL+ LVP+
Sbjct: 441  QIRPERLQE----QGFDPTSPTIQRLVTVVNALVGFPRHLSQHVGGMVLSATPLNALVPI 496

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                 ++  V Q++   ++  G++K D L L  L++L+++LD L      + L+ IP +D
Sbjct: 497  EPAAMAERAVIQWDKDDLDVLGILKVDILALGMLSVLRRALDDLG-----MTLADIPAED 551

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
              TY +L    +LG+FQ+ES      L  ++P C  D++  V++ RPGPI  D +  Y  
Sbjct: 552  PATYAMLQRGESLGVFQVESRAQMSMLPRLKPRCFYDLVIEVAIIRPGPIQGDMVHPYLR 611

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+ G E +    P +  +L+ T GV I+QEQVMQIA   +G+S  EAD LRRAM   + K
Sbjct: 612  RRQGLEPVRYPGPEVKKVLERTLGVPIFQEQVMQIAIDAAGFSGDEADGLRRAMAAWRRK 671

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +    +R I G    G S+  A  + + +  FA+YGF +SHAA++A++ Y +AW+K H
Sbjct: 672  GHLGPYSDRLIRGLRLRGYSEAFAQRLCQQIQGFAEYGFPESHAASFALLVYASAWIKCH 731

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            +P  F AA +  +        +  Q+AR+  ++++   +     D KV D  +   L  I
Sbjct: 732  HPAIFAAALLNSQPMGFYAPAQIVQEARRCGVEVLSVDICHSDWDCKVQDGALRLGLCLI 791

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KG+    A  ++   A     +L     R     L+   L  L +AGAL      R Q L
Sbjct: 792  KGMSPKEAERLLHWRAQGG--ALHSEALR-HGLGLSAAALHQLAYAGALSSLHGDRHQAL 848

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSSVRFENEQRVLGF 961
             ++                   ++                    E S+     + + LG 
Sbjct: 849  WAV-----------------QGSLPLPTALPMPVVPEQAPALPAETSAAACIADYQQLGL 891

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
                HPL   +  + + G +   E          RLA +V  +Q+  T  G+   ++T  
Sbjct: 892  SLGPHPLHFLRERIAQSGYRRIAEVRLQHHDRPDRLAGLVTHRQRPGTAHGT--VFLTLE 949

Query: 1022 EPAKEYEANFFP 1033
            + +       +P
Sbjct: 950  DESGMINVIVWP 961


>gi|86148598|ref|ZP_01066882.1| putative DNA polymerase III alpha chain [Vibrio sp. MED222]
 gi|85833627|gb|EAQ51801.1| putative DNA polymerase III alpha chain [Vibrio sp. MED222]
          Length = 1030

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/1039 (24%), Positives = 438/1039 (42%), Gaps = 79/1039 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  +  L   S+YS LEGA     ++ +    +  A+A+TD  ++   ++         +
Sbjct: 2    SQQYSELFCQSNYSFLEGASHAEELVLQADFLRYKALAVTDECSVAGIVKVHSAIKQHKL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
                       + +                 +VLL    E Y  L  +++          
Sbjct: 62   SLKQIVGSMFWLNEE--------------CQVVLLCPNREAYAELCRIITNARRRSS--- 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                 LS    +  +   +L           +F               +    RL++ LQ
Sbjct: 105  KGHYQLSEWDIMSAKHCFIL-----------WFPQQKNEDAHWGQWLSQHHSGRLWIGLQ 153

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDR 245
            RH +  D+      V+L+  H+LP+ A    L  +         L A+ +   +++  + 
Sbjct: 154  RHLKQTDQQYTDYCVELSQHHQLPITACGGVLMHNANRLPLQHSLTAIKYQQPITEVGNH 213

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 +  L++ +++  IF    E LE +  IA  C F L       P  +  + +    
Sbjct: 214  LLANAERCLRSINKISHIFK--AEWLEESNRIAELCEFDLDSLRYEYPSELIPQGE---- 267

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     G   R  QG         D +Q +D EL +I  + +  +FL + D + 
Sbjct: 268  TPMSYLRMLVEKGKRARFPQGV------PNDIQQIIDKELRLIDALDYPFFFLTIHDIVI 321

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK   I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +
Sbjct: 322  FAKSQGILY-QGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERDEPPDIDVDFEHE 380

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  +Q+D   K   N    
Sbjct: 381  RREEVIQYIYKKYGRERAALAATVISYRFKSAVRDVGKALGLQETQLDYFIKNT-NRRDK 439

Query: 486  PVSLQAIADDSRFREARLADPSVD--RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             +  QA     +  +  L   S+   + + +  ++ G  RH S H  G VI   PL +LV
Sbjct: 440  SLGWQA-----QLTQLGLQPDSLKGQQFIHLVNEIIGFPRHLSQHVGGFVISSGPLYELV 494

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVDLSL 600
            P+      D  + Q++   +E  GL+K D L L  L+ ++K  D + +   R + +    
Sbjct: 495  PVENAAMHDRTIIQWDKDDLETLGLLKVDVLALGMLSAIRKCFDLIKRIHGRSLTIAEIT 554

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
               DD + Y ++    T+GIFQ+ES      L  ++P    D++  +++ RPGPI  D +
Sbjct: 555  RLKDDPQVYGMIQRADTVGIFQIESRAQMSMLPRLKPRTYYDLVIQIAIVRPGPIQGDMV 614

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  R++G E I      ++ +L  T GV I+QEQV+++A + +G++  EAD LRRAM 
Sbjct: 615  HPFLKRRDGIEPISYPSKDVESVLSRTLGVPIFQEQVIKLAMVAAGFTGGEADQLRRAMA 674

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K    + K K + I G  K G     A  IF+ +  F +YGF +SH+A++AV++Y +A
Sbjct: 675  AWKKNGNVFKFKNKLIEGMQKRGYETEFAEQIFKQICGFGEYGFPESHSASFAVLAYCSA 734

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN---- 833
            W+K +YP  F  + +  +        +  QDA++ N+ ++P  VN    +  V  +    
Sbjct: 735  WLKCYYPECFYTSLLNSQPMGFYSPSQLVQDAQRHNVVVLPVCVNASQDNHTVIAHQNGL 794

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I   L  IKG      + ++       +       S+V    +N++ +E L  A AL  
Sbjct: 795  AIRLGLRQIKGFSEHGIQSVLANRPQSGYR----HPSQVKQLSMNKKDIELLASANALHN 850

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R Q   +   I   A             +F+       D          N      
Sbjct: 851  VSGDRFQTRWA---IMDSAS---------DLPLFSQVYDDVGDGHDEHALHKPNEMQDLL 898

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +   +G   + HP+ + +   R       ++ +     + + +  +V  KQ   T  G 
Sbjct: 899  EDFTSVGISLNKHPITLLEEAGRLGRFTHMKDLIQQRHKSMVTVVGLVTGKQAPGTAAG- 957

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + +VT  +         +
Sbjct: 958  -VTFVTLEDNTGNINVVVW 975


>gi|217970361|ref|YP_002355595.1| DNA polymerase III subunit alpha [Thauera sp. MZ1T]
 gi|217507688|gb|ACK54699.1| DNA polymerase III, alpha subunit [Thauera sp. MZ1T]
          Length = 1075

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/1064 (25%), Positives = 439/1064 (41%), Gaps = 88/1064 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S++S   GA     ++ + AA    AIA+TD  +    +   +   A    
Sbjct: 3    PAYAELHCLSNFSFQRGASHPEELVAQAAAFGYSAIALTDECSFAGVVRAHRALQALP-- 60

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                           ++    +      P +VLL +   GY RL  L+++       K  
Sbjct: 61   ----------EAGRPRLIVGCELRLADGPCLVLLAADRAGYGRLSRLLTQAR-RSADKGR 109

Query: 129  VRICLSWLQ---------EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK-RLLTFKKLF 178
              +  + L          E     L +L                + VA +       K F
Sbjct: 110  YHLTRAMLDATRADEAAAEALPGCLALLIPPE--EFPPPGAAGDAAVALRSEARWLAKRF 167

Query: 179  GDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
              R ++       G D  R   ++++A    +P VA   +L          DV+ A+   
Sbjct: 168  PGRSWIAHTPRLDGRDPARLHWILRIAQATGVPAVAAGGALMHEAARRPLADVMSALRLH 227

Query: 238  TVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V++         +  L  R+ +       PE L  TV +A RC F L       P   
Sbjct: 228  CSVAEAGLALAPNAELRLHERATLARRHP--PELLAETVAVAARCRFDLDELRYEYP--- 282

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD----------------YRQR 340
              E     +     LR     GL  R  +    +   A                   R +
Sbjct: 283  -AELVPADETPTRWLRRLVEGGLAWRYGKAGKERRAAAPATIAAAPPPAEDPAPPTVRAQ 341

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            ++ EL +IA + +  YFL V D +++A++  I +  GRGS A SV  +AL IT++DP   
Sbjct: 342  IEHELALIAELGYEPYFLTVHDIVRFARERGI-LCQGRGSAANSVVCWALGITEVDPQLG 400

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             +L ERF++ +R   PD D+DF  +RR+EVI+Y+  KYG ER A   T    +A++ALRD
Sbjct: 401  IMLVERFISRERDEPPDIDVDFEHERREEVIQYLYRKYGRERAALAATVIRYRARSALRD 460

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            VGRAL +  +Q++RL +         +  + +A+         A P   RL+ ++++L G
Sbjct: 461  VGRALGLDETQIERLTREHHWFDGRHILPERLAE----AGLDPASPVTQRLVALTEELIG 516

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              RH S H  G VI    L +LVP+     SD  V Q++   ++  GL+K D L L  L+
Sbjct: 517  FPRHLSQHVGGFVIARGRLDELVPVENAAMSDRTVIQWDKDDLDAVGLMKIDVLALGMLS 576

Query: 581  LLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
             L++ L  + A RG  + L+ IP +  E Y +L+   ++G+FQ+ES      L  ++P  
Sbjct: 577  ALRRGLALVSAWRGEALTLATIPRERKEVYEMLSRADSVGVFQVESRAQMTMLPRLRPQR 636

Query: 640  IEDIIALVSLYRPGPIDNIVVYN------NRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              D++  V++ RPGPI   +V+           G++ +  +   I  +L  T GV I+QE
Sbjct: 637  FYDLVVEVAIVRPGPIQGGMVHPYLQARERAARGEDPLDGLREEIRGVLARTLGVPIFQE 696

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            QVMQ+A + + ++  EAD LRRAMG  + K E+++ +++ + G + NG     A  + + 
Sbjct: 697  QVMQLAVVAADFTGGEADQLRRAMGAWRRKGELERYRQKLLDGLANNGYDPDFAQRLCQQ 756

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  F  YGF +SHAA++A++ Y +AW+K   P  FLAA +  +        +  QDAR+ 
Sbjct: 757  IEGFGSYGFPESHAASFALLVYASAWLKCFAPAAFLAALLNSQPMGFYAPAQLIQDARRH 816

Query: 813  NIQIMPPSVNTPCVDFKVG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
             +++    V     D  +         +   L  I+G+G   A  I  A  +  F    D
Sbjct: 817  GVEVRAADVGASAWDCMLETADGAQPAVRLGLRMIRGLGREAATRIAAARGEHAFADTRD 876

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
              +R        R L +             R Q L             + +       + 
Sbjct: 877  LAARARLDTGELRTLAAGGAL---ASLAGHRRQALW------------QASGAAPLPGLL 921

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
            A   G                +     +   LGF    HPL   +  L ++      +  
Sbjct: 922  AEAPGGDVAAT----LDAPAEAEDLLADYARLGFTLGRHPLAFVREQLARLRFLTAADIT 977

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            A       R A +V  +Q+  T KG+   ++T  +         
Sbjct: 978  AAPDRMLARGAGLVTCRQRPGTAKGTL--FLTLEDETGLTNVIV 1019


>gi|148980529|ref|ZP_01816102.1| putative DNA polymerase III alpha chain [Vibrionales bacterium
            SWAT-3]
 gi|145961182|gb|EDK26497.1| putative DNA polymerase III alpha chain [Vibrionales bacterium
            SWAT-3]
          Length = 1030

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/1037 (24%), Positives = 435/1037 (41%), Gaps = 75/1037 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  +  L   S+YS LEGA     ++ +    +  A+A+TD  ++   ++         +
Sbjct: 2    SQQYSELFCQSNYSFLEGASHAEELVLQADFLRYKALAVTDECSVAGIVKVHSAIKQHKL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
                       + +                 +VLL    + Y  L  +++          
Sbjct: 62   SIKQIVGSMFWLNEK--------------CQMVLLCPNRKAYAELCRIITNARRRSS--- 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                 LS    +  +   +L           +                +    RL++ LQ
Sbjct: 105  KGHYQLSEWDIMSAKHCFIL-----------WLPQQKTEDAHWGQWLSQHHSGRLWIGLQ 153

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
            RH +  D+      V+L++ H LP+ A    L  +         L A+ +   +++    
Sbjct: 154  RHLKQTDQQYIDYCVELSHHHHLPMTACGGVLMHNANRLPLQHSLTAIKYQKPITEVGTH 213

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 +  L++ +++  IF    E LE +  IA  C F L       P  +  + +    
Sbjct: 214  LLANAERCLRSINKLSHIFK--TEWLEESNRIAELCDFDLDSLRYEYPSELIPQGE---- 267

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     G + R  QG         D +Q +D EL +I  + +  +FL + D + 
Sbjct: 268  TPMSYLRMLVEKGKQARFPQGV------PSDIQQIIDKELGLIDELDYPFFFLTILDIVM 321

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK   I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +
Sbjct: 322  FAKSQGILY-QGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERDEPPDIDVDFEHE 380

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+E+I+Y+  KYG ER A   T  S + K+A+RDVG+AL +  +Q+D   K   N    
Sbjct: 381  RREEIIQYIYQKYGRERAALAATVISYRFKSAVRDVGKALGLQETQLDYFIKNT-NRRDK 439

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  QA          +       + + +  ++ G  RH S H  G VI   PL +LVP+
Sbjct: 440  SLGWQAQLT---LLGIQPDSLKGQQFIHLVNEIIGFPRHLSQHVGGFVISSGPLYELVPV 496

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVDLSLIP 602
                  D  + Q++   +E  GL+K D L L  L+ ++K  D + +   R + +      
Sbjct: 497  ENAAMHDRTIIQWDKDDLETLGLLKVDVLALGMLSAIRKCFDLIKRIHGRSLTIAEITRL 556

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             DD + Y ++    T+GIFQ+ES      L  ++P    D++  +++ RPGPI  D +  
Sbjct: 557  KDDPQVYGMIQRADTVGIFQIESRAQMSMLPRLKPRTYYDLVIQIAIVRPGPIQGDMVHP 616

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R++G E I      ++ +L  T GV I+QEQV+++A + +G++  EAD LRRAM   
Sbjct: 617  YLKRRDGIEPISYPSKEVESVLSRTMGVPIFQEQVIKLAMVAAGFTGGEADQLRRAMAAW 676

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    + K K + I G  K G     A  IF+ +  F +YGF +SH+A++AV++Y +AW+
Sbjct: 677  KKNGNVFKFKNKLIEGMQKRGYDIEFAEQIFKQICGFGEYGFPESHSASFAVLAYCSAWL 736

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----RI 835
            K +YP  F A+ +  +        +  QDA++ N+ I+P  VN    +  V        I
Sbjct: 737  KCYYPECFYASLLNSQPMGFYSPSQLVQDAQRHNVAILPVCVNASQDNHTVVSQQNGLAI 796

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               +  IKG+     + ++       +       S+V    +N++ +E L  A AL    
Sbjct: 797  RLGMRQIKGLSEHGIQSVLANRPSSGYR----HPSQVKQLSINKKDIELLASANALHNVS 852

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R Q   +   I   A             +F+    +F      +     +       +
Sbjct: 853  GDRFQTRWA---IMDSAS---------DLPLFSQIDDSFEKGNDEQGLQQPSEMQDLLED 900

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
               +G   + HP+ + +   R       ++       + + +  +V  KQ   T  G  +
Sbjct: 901  FTSVGISLNKHPITLLEEANRLGRFTHMKDLKQQRHKSMVTVVGLVTGKQSPGTAAG--V 958

Query: 1016 GWVTFSEPAKEYEANFF 1032
             +VT  +         +
Sbjct: 959  TFVTLEDNTGNINVVVW 975


>gi|260903724|ref|ZP_05912046.1| error-prone DNA polymerase [Brevibacterium linens BL2]
          Length = 1127

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1043 (28%), Positives = 477/1043 (45%), Gaps = 74/1043 (7%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              S  +  L VHS +S L+GA     ++   AA    ++A+TD N L+ A+ F+  A   
Sbjct: 87   TSSVEWAELHVHSQFSFLDGASDPEELVAAGAAAGLTSLALTDHNGLYGAVRFAHAAAEV 146

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+  + G +L + +++ +          P    +++L    EGY RL   ++   L  + 
Sbjct: 147  GLPTVFGAELSVGLEEKIP-----GQTDPDATHLLVLARGVEGYHRLSMAITEANLAGE- 200

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYV 184
            K      L  L  + +    +LTG   GP+ RA   N        L     LF  DRL V
Sbjct: 201  KNRPVFGLEELAAM-SGDWTILTGCRKGPLRRA--LNDPDGGLGALRKLIALFGADRLAV 257

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ- 242
             L R     D  R   +  LA    LP+VA+N+  F +   +++  V  +V     + + 
Sbjct: 258  ELSRDGTPDDDERLRHLGDLAQRTHLPIVASNSVHFATRAQWKSAQVRASVRSRLSLDEL 317

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                  T +  +    EM + F    +ALEN V I R CSF+L    P LPR    +   
Sbjct: 318  AGWLPATANARIHTGEEMAARFPR--QALENAVAIGRECSFVLNSARPDLPRAPMPD--- 372

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +  E  LR      +E R A+    +  + + +  +LD E+++IA + F GYFLIV D
Sbjct: 373  -DRGAEEYLREL----IEDRGARRYGTRAENPKAW-AQLDREMDMIATLGFCGYFLIVYD 426

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
              ++  +  I    GRGS A S   Y L IT +D ++  LLF+RFL+PDR   PD DID 
Sbjct: 427  ITEFCHRVAI-FCQGRGSAANSAVCYVLDITAVDAVKHELLFDRFLSPDRKGYPDIDIDI 485

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI+YV + +G ER AQ+    + +AK+A+RD   +L     Q D   K     
Sbjct: 486  ESGRREEVIQYVYDHFGRERAAQVANVITYRAKSAIRDAAFSLGYEPGQQDAFSKASNRW 545

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               P                   P    +L I+  L G  RH   H+ G+++ DRP+ ++
Sbjct: 546  STLP--------------EAEDSPVPAPVLTIADDLLGSPRHLGIHSGGMILADRPIGEV 591

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLI 601
            VP+ +       V Q++        L+KFD LGL  LT L + +D +    G  ++ + I
Sbjct: 592  VPIEKATMGHRTVVQWDKDDCAVMDLVKFDLLGLGMLTALHEMVDLVHRHTGELIERAHI 651

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--V 659
              +D   Y +L     +G+FQ+ES      L  ++P+   D+   V+L RPGPI      
Sbjct: 652  DDEDEAVYTMLQKADAVGVFQVESRAQLATLPRLRPETFYDLAVQVALIRPGPIQGGSVH 711

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R+ G +K+  +HPL+   L +T GV ++QEQ+MQ+A  + G++ ++AD LR+AMG 
Sbjct: 712  PYIRRRQGLDKVEYLHPLLRKSLAKTYGVPLFQEQLMQMAIDVGGFTGADADQLRQAMGS 771

Query: 720  KIKEE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E+ M +  ++F +GA+ NG+ +  A +IF  +A FA+YGF +SHA ++A + YQ+AW
Sbjct: 772  RRSEKRMTELAQKFQTGAAANGVDEETAESIFSTIAAFANYGFPESHAISFANLVYQSAW 831

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------- 830
             K H+   F    +  +       +    DAR+  ++I+P  +        +        
Sbjct: 832  FKYHHHAAFTVGLLRSQPMGFYSPQSLVADARRHGVRILPVDIRHSMAGSDLERLESDGT 891

Query: 831  ---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               G+  I   L ++  VG + A  I+   A  PF S+ D   R     + ++ LE L  
Sbjct: 892  GDSGEFGIRLGLDSVSHVG-SFAEVIVTERAKAPFTSVADLAERT---GIGKQGLEGLAT 947

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGAL CF   R Q L           W+       H  +      T S   TL      +
Sbjct: 948  AGALSCFDLDRRQAL-----------WLAGGVAGAHPGVLPG-TATISSAPTLPTMDAFD 995

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +++    E    G    G+P ++ +  L + G     ++ A   G  + +AA+V  +Q+ 
Sbjct: 996  TTL---AELFSTGITVDGYPTEILRASLIERGYASTADAAAAADGTRMTVAAIVTHRQRP 1052

Query: 1008 KTRKGSRIGWVTFSEPAKEYEAN 1030
             T  G  I ++   +        
Sbjct: 1053 ATASG--ITFINLEDEFGMLNVV 1073


>gi|294011130|ref|YP_003544590.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S]
 gi|292674460|dbj|BAI95978.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S]
          Length = 1189

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/1095 (23%), Positives = 450/1095 (41%), Gaps = 107/1095 (9%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----- 59
            L K+P F  L   +++S L GA    +++ +  A     + I D N++   +        
Sbjct: 40   LPKAPPFAELVAATNFSFLRGASHPQDMVARAIALGLEGLGIADRNSVAGVVRAHVARKR 99

Query: 60   ----------QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEG 108
                      +    AG    +  + +   + +L++    +  F    P IV   +T  G
Sbjct: 100  WPERMRAALLEARKEAGQPLELSEEEERACRTDLRLVVGARLVFVDGTPDIVAYPATRRG 159

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG--------PIDRAFF 160
            +  L +L++   L    K    +    L     + L+++  GS+         P+D    
Sbjct: 160  WGELTKLLTLGNLRS-VKGDCILRYEDLTAYLDDLLLIVMPGSTATQQTAHRKPVDYEHD 218

Query: 161  FNSSQVA-----------------EKRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQVVQ 202
               SQ A                 E  L+    L   R+++     R G D  R +Q   
Sbjct: 219  DRPSQEAIRQGHLSLVPPPAPSDLEALLVRLSHLAPRRVWLAAALRRDGRDARRLAQFKG 278

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMV 261
            L+    +PL+AT ++L+ S       DVL  +   T +++  R      + ++ + +E+ 
Sbjct: 279  LSAITGVPLLATMDALYASPAQRPLQDVLGCIREGTTIARAGRLLEANAERHVHDPAEIA 338

Query: 262  SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
             +F D PEA+  + +   R  F L   +   P     E        +  L     +   V
Sbjct: 339  HLFRDCPEAVAESGDFLSRVHFTLDQLSYEYPHEPVPEG----WTAQQWLEELTWSAAHV 394

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
            R       K       RQ L  E ++IA+  ++ YFL V D + +A+   I +  GRGS 
Sbjct: 395  RYGARLPLK------VRQTLQEEFSLIAKRNYAYYFLTVHDIVAFARTKGI-LCQGRGSA 447

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            A S+  + L +T IDP R  LLF RF++ DR   PD D+DF  +RR+EV++Y+  +YG  
Sbjct: 448  ANSMVCFLLGVTSIDPFRHDLLFSRFVSEDRNEPPDIDVDFEHERREEVMQYIYERYGRH 507

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
            R     T    ++++A+R+V + L +      RL   +    +  ++   I +       
Sbjct: 508  RAGIAATVIHYRSRSAVREVAKVLGLGEDVSARLSSTVWGSYSSDMNDVRIVE----AGF 563

Query: 502  RLADPSVDRLLEISQKL--EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
             L +P + +L  +  +L  E   RH S H  G V+    L + VP++     D    +++
Sbjct: 564  ALDNPQIAQLKAVVDQLLSEPFPRHLSQHVGGFVLTQNRLDETVPLHHAAMEDRSFIEWD 623

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD--DHETYHLLTTKGT 617
               I+  GL+K D L L  L+ ++++ D + ++G+      +  +  D   Y +L    +
Sbjct: 624  KDDIDALGLMKVDVLALGMLSCIRRAFDLMREQGLGDHQLTVDMEAQDEAVYDMLCKGDS 683

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVS-- 673
            +G+FQ+ES      L  ++P  I D+   V++ RPGPI+   +  Y  R+ G EK+    
Sbjct: 684  IGVFQVESRAQINMLPRLKPRSIYDLTVQVAIVRPGPIEGNMVHPYLRRRCGDEKVEYPR 743

Query: 674  --IHP----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMD 726
               H      +  +L ET GV ++QEQ M++A   +G+  +EAD LRRAM   +    + 
Sbjct: 744  PSPHHGPADELQKLLGETYGVPLFQEQAMKLAITAAGFEPAEADALRRAMATFRNVGTIH 803

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              +E+ I G  + G     A   F+ +  F  YGF +SHA ++A + Y +AW+K H P  
Sbjct: 804  HFREKMIRGMVERGYEAEFAERCFKQIEGFGSYGFPESHALSFARLVYVSAWIKCHQPAV 863

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-------------- 832
            F  A +  +        +  +DAR+  + +    VN    D  +                
Sbjct: 864  FACALLNSQPMGFYAPAQIVRDAREHGVTVHDVDVNMSGWDNALEPLLRSRDGGRGEGEG 923

Query: 833  --NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                +   L  ++G     A+ ++ A  +  F ++ED   R        R+L     A A
Sbjct: 924  RALALRLGLRQVEGFREDWAKRLVAARKEGLFSTMEDLARRAGLPARALRLL---ADADA 980

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
                G  R   L           W  +   +    +FA  K     +           S 
Sbjct: 981  CRSLGKDRRTAL-----------WEARRTPSDELPLFAAAKARELGEEPDAMLPAMALSE 1029

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
              E +  V      GHP+   +P+    G+    +  A   G  ++ A +V+ +Q+    
Sbjct: 1030 HVEADYLVTRLSLKGHPMQFLRPVFAAEGVLSCAQISAARNGTLVKTAGVVLVRQRPG-- 1087

Query: 1011 KGSRIGWVTFSEPAK 1025
            KG+ + ++T  +   
Sbjct: 1088 KGNAV-FITIEDETG 1101


>gi|226525297|gb|ACO70896.1| DNA polymerase III alpha subunit [uncultured Verrucomicrobia
            bacterium]
          Length = 1022

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/1036 (27%), Positives = 475/1036 (45%), Gaps = 80/1036 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++V L   S++S L G      + ++ A  + PA+A+ D + ++ A  F  K    G++ 
Sbjct: 2    AYVELHARSAFSFLRGGSFPERLAERAAELKMPAMALCDRDGVYGAPRFFGKGREHGVRS 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC+L ++                    + +LV +  GYQ L  L+++  L    ++S 
Sbjct: 62   IVGCELTMEDG----------------FILPVLVESRTGYQNLCRLLTQAKLRGTKERSP 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +  + L E    GL+ L G  +G ++            K L  F K   + ++V +QRH
Sbjct: 106  -VNWNDLAEYAN-GLVALFGMENGKLEAGP-------VPKLLAAFGK---ENVFVEIQRH 153

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
                ++ R   ++ LA  H LPL+ATN  L+      E  DV   + H T +    R   
Sbjct: 154  LTRGEQRRNQALIDLARHHRLPLLATNGVLYAEPRQREVLDVFTCLRHHTQLDLAGRLLE 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + +LK+ +EM ++F DLPEA++NT  +A R  F L+      P F         +  
Sbjct: 214  QNAERHLKSGAEMSALFRDLPEAIDNTERLAERLEFTLENLGYQFPTFPT----SGDETM 269

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E  LR     G   R +     K        ++++ EL +I R+ F+GYFLIV D +++ 
Sbjct: 270  EGMLRRLTYEGARRRYSARLPRK------VVRQIERELELICRLGFAGYFLIVWDLVKFC 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM--SMPDFDIDFC-Q 424
            ++N+I V  GRGS A SV  Y L IT  DP+++ LLFERFL+  R   S PD D+D    
Sbjct: 324  EENDIMV-QGRGSAANSVVCYCLRITLCDPIKYKLLFERFLSEGRNPRSWPDIDLDLPSG 382

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DP 483
            DRR+ VI+ V  +YG    A      S + ++A R++G+ L      +DR   L  N D 
Sbjct: 383  DRRERVIQEVYRRYGERGAAMTANVISYRGRSAAREIGKVLNFSNDVLDRFSNLFANGDF 442

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             H +  Q     +         P +   + +++ + GL RH   H+ G+VI  + L ++V
Sbjct: 443  PHTLGFQEQVIKAGIAP---EHPRLPAFMRLNEAMRGLPRHLGQHSGGMVICQQSLDRVV 499

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+ R       V Q++    E  G++K D LGL  L  +Q++L   ++RG +V    +P 
Sbjct: 500  PLERASMPGRVVVQWDKDDCEDLGIVKIDLLGLGMLAAIQETLTLCSERGREVQFHKLPQ 559

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVY 661
            DD  TY ++    T+G+FQ+ES      L  M+P C  D++  V++ RPGPI       Y
Sbjct: 560  DDPATYEMIRKADTIGVFQIESRAQMATLPRMKPTCFYDLVIEVAIIRPGPIQGGLMHPY 619

Query: 662  NNRKNGKEKIVS--IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
              R+ GKE         L+ P+L+ T GV ++QEQ++ +A  L+ +S SEA+ LRRA+  
Sbjct: 620  LARREGKEPETYFGYDELLKPVLERTLGVPLFQEQMLGMAMALADFSGSEAEELRRALSF 679

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             +  E M+K + +  +   +  I       I   ++ FA YGF +SHA ++A ++Y ++W
Sbjct: 680  HRSHERMEKVQVKLRAALERKEIRPEAIEQIVNAVSSFALYGFPESHAISFAYLAYGSSW 739

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYY 837
            +K H   EF AA +  +           +DA++  ++  P  V        +  D  I  
Sbjct: 740  LKVHRAPEFYAALLNNQPMGFYAPATLIKDAQRRGVKFRPVCVQASQWPCVIEADGAIRL 799

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  +KG+    A  ++   A +P++ L D  SRV   K   R L      GA    G  
Sbjct: 800  GLCMVKGLQRERAERLI---AGRPYEVLGDVQSRVRLTKEEWRTL---AEIGAFAVLGKH 853

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R + L ++++  +             +++F     +  +          N + R   +  
Sbjct: 854  RREALWTVEDEYRE------------DDLFPMTTASVKECP----LPPMNPAERVRADYA 897

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
                    HP+ + +  + +       +      G  +R+A  V+ +Q+  T KG  + +
Sbjct: 898  GTSVTIGRHPMALLRASVPE--AWRAVDLAHASHGTRVRIAGNVICRQRPGTAKG--VVF 953

Query: 1018 VTFSEPAKEYEANFFP 1033
            ++  +      A   P
Sbjct: 954  ISLEDETGIANAIVHP 969


>gi|120611340|ref|YP_971018.1| DNA polymerase III subunit alpha [Acidovorax citrulli AAC00-1]
 gi|120589804|gb|ABM33244.1| DNA polymerase III, alpha subunit [Acidovorax citrulli AAC00-1]
          Length = 1076

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/1049 (24%), Positives = 447/1049 (42%), Gaps = 82/1049 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S   GA     ++++ A     A+A+TD  ++   +     A   G++
Sbjct: 20   PGYAELHCLSNFSFQRGASHPIELVERAAELGYAALALTDECSVAGVVRAHTAARRCGLK 79

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL---LDQG 125
             I+G +                        +V L     G+  L E +S         + 
Sbjct: 80   LIVGSEFAC-----------------GDVRLVALARDETGWGNLCEFISDARRIAPKGEY 122

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            +       + L+     G  +L       +             +     +   G   +V 
Sbjct: 123  RVHAGSDFARLR-----GCEVLVAPRRDRLSALEPRGVGLAVAQACAPLRAQ-GIHPWVA 176

Query: 186  LQRHRGYDRYRESQVVQLA-YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            ++ H   D     + ++ A    +LPLVA  +      +     DV+ AV     VS+  
Sbjct: 177  VELHTAPDDAAWLEALERAGRALDLPLVAAGDVHMHVLQRKPLQDVVTAVRLGRPVSECG 236

Query: 245  RP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               +   +  L+ R  +  I+   P  L  T+E+A RC+F L       PR    +    
Sbjct: 237  FALQAHGERRLRPRMRLAGIYP--PALLAATLEVAARCTFSLDEIRYRYPRENVPDGMTP 294

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +     L     AG   R  QG         + R ++  EL +IA  ++  YFL V D 
Sbjct: 295  GEA----LAAYTEAGARERYPQGV------PPEVRAQIAKELELIAHCRYEMYFLTVHDI 344

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            ++ A++  I +  GRGS A S   + L IT +DP +  LLFERF++ +R   PD D+DF 
Sbjct: 345  VREARRRGI-LCQGRGSAANSAVCFCLGITAVDPTKTQLLFERFISKERDEPPDIDVDFE 403

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR+EVI+Y+  KYG ER A      + + ++ALRDVG+AL +  + VD   K   +  
Sbjct: 404  HDRREEVIQYIYRKYGRERAAIAAVVITYRTRSALRDVGKALGVAPAVVDAFAKD-HHWF 462

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ + + + +    A +A  +    LE++ +L G  RH S H  G V+ +  L++LV
Sbjct: 463  DEDIAAERLQELAAGLGAPIAAHTAALWLELAHELRGFPRHLSQHVGGFVLTEGKLTRLV 522

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIP 602
            P+         + Q++   ++   L+K D L L  L+ L+++LD   A RG   +L+ IP
Sbjct: 523  PVEPASMDGRSIIQWDKDDLDDMHLMKVDVLALGMLSALRRALDLRAALRGQAWELADIP 582

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D  TY ++    T+G+FQ+ES      L  ++P  + D++  V++ RPGPI   +V+ 
Sbjct: 583  REDPATYDMICAADTVGVFQIESRAQMSMLPRLKPRELYDLVVEVAIVRPGPIQGGMVHP 642

Query: 663  -----NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
                  R    +  V  H  + P L+ T GV I+QEQVMQIA + + ++   AD LRR+M
Sbjct: 643  YLQARERMARGDGFVLEHKKLGPALERTLGVPIFQEQVMQIAMIAADFTPGMADDLRRSM 702

Query: 718  GK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
               K +  + + ++  + G   NG S   A  I++ +  F +YGF +SHA ++A+++Y +
Sbjct: 703  AAWKRRGGVHRFEQALMEGMRNNGYSDDFAQRIYQQMLGFGEYGFPESHAYSFALLAYAS 762

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----- 831
            +W K H P  FLAA +  +        +   DAR+  ++++P        D  +      
Sbjct: 763  SWFKRHEPACFLAALLNSQPMGFYTPSQLVHDARRHGLRVLPADAAHSDWDSTLEGPAVP 822

Query: 832  -------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
                      +   L  + G G   A  +M A A  PF  ++D   R    + +R+ L++
Sbjct: 823  LPGLQQAQPAVRLGLRLVAGYGPEAAARLMRARAASPFAGVQDLALRA---RQDRQDLQA 879

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  A AL      R Q +      ++    ++             E       + L +  
Sbjct: 880  LAAADALRSLAGHRRQQMWDAAAQRRAPALLQ-------------EAPVHEAPLALPEAP 926

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V    +    G     HP+ + +  +    I+  +   A   G  +R   +V  +
Sbjct: 927  EGEEIV---FDYAATGLTLRRHPMALLRERMAGWRIQAAQALQAVPHGRRVRACGIVTVR 983

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG+   +VT  +         +P
Sbjct: 984  QRPGSAKGTM--FVTLEDETGTVNVIVWP 1010


>gi|254443842|ref|ZP_05057318.1| DNA polymerase III, alpha subunit subfamily, putative
            [Verrucomicrobiae bacterium DG1235]
 gi|198258150|gb|EDY82458.1| DNA polymerase III, alpha subunit subfamily, putative
            [Verrucomicrobiae bacterium DG1235]
          Length = 1088

 Score =  744 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/1088 (25%), Positives = 471/1088 (43%), Gaps = 119/1088 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+V L   S++S L GA   + + +  A     A+A+ D    + +  F       G++ 
Sbjct: 3    SYVELHGRSAFSFLRGASQPDELAEACADRGVAAMAVCDRGGFYGSARFHAACREMGVKG 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC                + P     ++ ++V T  GYQ L  +++ M+L    K   
Sbjct: 63   IVGC----------------ELPMVDGSALPVVVKTRAGYQSLCRILTDMHL-SAAKGEG 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+    L    TEGL+ LTG   G + R +          R+   K LF    ++V LQR
Sbjct: 106  RLAWGDLV-GRTEGLVALTGDEDGVLRRYWDLGDRDGMRDRVAELKGLFGAGNVFVELQR 164

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
             H   +    S +  LA    + +VATN   +         DV   +     +       
Sbjct: 165  RHERGEERLVSGLRDLAEAEGVSMVATNGVSYARPAGRALMDVFTCLREKVSLDGAGALL 224

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  ++K  +EM  +F D+PEA++NT+ IA +  F L+      P +     + +   
Sbjct: 225  SRNGQRFVKAPAEMRHLFRDIPEAVDNTLRIAEQVEFGLENLGYEFPSYGVPRGESM--- 281

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L+    AG   R       KG   +  R++++ EL VIA++ FSGYFLIV D + +
Sbjct: 282  -DTFLKKVVWAGARKRF------KGEPNEKTRRQMEHELAVIAKLGFSGYFLIVWDLVNF 334

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC-QD 425
             + N I    GRGS A SV  + L IT +DP+   LLFERFLN +R S PD DID    +
Sbjct: 335  CRDNGIM-AQGRGSAANSVVCFCLEITPVDPVGAGLLFERFLNEERRSWPDIDIDLPSGE 393

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPA 484
            RR+ VI+ V  +YG    A      + + K+A R++G+ L      + R   L   ++  
Sbjct: 394  RREMVIQEVYRRYGRHGAAMTANVITYRRKSAAREIGKVLGFDEEVLGRFSSLFGGHNYE 453

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            H V L   AD           P    L ++ +++ GL RH   H+ G+VI    L  +VP
Sbjct: 454  HGVEL---ADQLEKSGVTKEHPRARALAKLCEQVLGLPRHLGQHSGGMVICQGALDTVVP 510

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +         V Q++    E  G++K D LGL  + ++Q +++ L  +GV ++L+ IP D
Sbjct: 511  LEPASMPGRSVCQWDKNDCEDLGIVKVDLLGLGMMAVMQDTIETLNTKGVDIELATIPKD 570

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYN 662
            D  T+ ++    T+G+FQ+ES      L  M+P    D++  V + RPGPI    +  Y 
Sbjct: 571  DVVTFEMMQRADTVGVFQIESRAQIATLPRMKPKTFYDVVVEVGIIRPGPIQGKMVHPYL 630

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R+    KI  I P ++ +L+ T GV ++QEQ++++A +++ +S +EA+ LRRA+     
Sbjct: 631  ERREDPSKIEYIDPRLEEVLERTLGVPLFQEQILKVAMVMADFSGAEAEELRRAVSTFST 690

Query: 723  EE--MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             E  M+K   + +    + G+ +T   ++   ++ FA YGF +SHA ++ +++Y + ++K
Sbjct: 691  NEKRMNKVLGKLVGAMRERGVEETKVEDVVRAVSSFAHYGFPESHAISFGLLAYASTYLK 750

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF--------KVGD 832
             HY  EF    +  +           QDA++  I+++P  V     +         KV  
Sbjct: 751  CHYAAEFFVGLLNNQPMGFYAPATLIQDAKRMGIRVLPVCVVESRWECGAAGAAWEKVEG 810

Query: 833  NRIYYSLAAIKGV----GTTTARH------------------------------------ 852
              +   +  ++GV        AR                                     
Sbjct: 811  GGMKDEVDRVEGVMATKRHEEARRGDGDLMATKRHEKARKCEGGDRVGEIRLGLVMVKGL 870

Query: 853  -------IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                   ++       F SL+DF  R    K   R+L S+   GAL+CF   R   L  +
Sbjct: 871  SRERGKALVAERERGAFRSLKDFRFRTRFNKEELRMLASI---GALNCFCGDRRSALWEV 927

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            + +               +++FA       ++  L    V     R + +   +G     
Sbjct: 928  ETLLDE------------DDLFAF----VEEEEALSPLEVMTHLERLQADYAGVGVTVGK 971

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+   +  L   G++   +   T  G+ +++A  V+ +Q+  T KG    +++  +   
Sbjct: 972  HPMASLRGQLG--GVRRACDLDTTSNGSRVKVAGQVICRQRPGTAKG--FVFISLEDETG 1027

Query: 1026 EYEANFFP 1033
                   P
Sbjct: 1028 ISNVIVVP 1035


>gi|322372809|ref|ZP_08047345.1| DNA polymerase III, alpha subunit [Streptococcus sp. C150]
 gi|321277851|gb|EFX54920.1| DNA polymerase III, alpha subunit [Streptococcus sp. C150]
          Length = 1036

 Score =  744 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/1025 (29%), Positives = 494/1025 (48%), Gaps = 100/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS ++  + L + + +       A+ + D +NL++A  F+Q A   G++P+
Sbjct: 2    FAQLDTKSVYSFMDSVVDLPSYVKRAKELGYQALGLMDRDNLYAAYHFAQLATKNGLRPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + ++  +  +              +  LL    +GY+ L++L + +     G++   
Sbjct: 62   IGMEANLVYEGRM-------------IAFRLLAKNNQGYKNLMKLATELSS---GQREFT 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               ++L EI    LI+ +                             F   +++ +   R
Sbjct: 106  ALSNYLNEIA---LILPS-----EEWEPGMA----------------FESDVFIGV---R 138

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D              + P++  +   +    D     +L A++ +  +S+     +  
Sbjct: 139  PEDA---------GKEFDYPVLPLHTVRYFDNVDRSTIQMLHAISQNVSLSEASICPMN- 188

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               L +  EM S  SD+P+AL N  ++    ++        LPRF      +      ++
Sbjct: 189  -QLLFSPQEMESAHSDIPDALNNLDQLVSDITYQFDTEL-KLPRF------NRDMLAVDQ 240

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A  GLE         K   A  Y++RLD EL VI +M F  YFLIV D +++ +  
Sbjct: 241  LRQLAQDGLE--------TKELTASVYQERLDKELAVIHQMGFDDYFLIVWDLLRFGRSR 292

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R +MPD DID     R E 
Sbjct: 293  GYYMGMGRGSAAGSLVAYALDITGIDPVKNDLLFERFLNEERYTMPDIDIDLPDIYRSEF 352

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+++YG    AQI+TF +  AK A+RDV +       ++ +L K I           
Sbjct: 353  LHYVRDRYGSMHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKISFRDNLT---S 409

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+     P   R  EI++ +EG  R  S HAAGIV+ D  L++ +P+     
Sbjct: 410  VYEKNMSFRQLINQRPEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTEHIPL--KAG 467

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + L +   V +D+  I  +D +T 
Sbjct: 468  EDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGVVIDIKSIDLEDSQTL 527

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E +G    L+ ++P   E+++A  SL RPG  D I  +  RK GKE
Sbjct: 528  ALFASGKTKGIFQFEQAGAINLLKRIKPSQFEEVVATTSLNRPGASDYIDNFIARKYGKE 587

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  I P++  +L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM K  
Sbjct: 588  KVDLIDPVVAHILEPTYGIMLYQEQVMQIAQVFAGFTLGKADLLRRAMSKKDANEMSKMS 647

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E F+SG+ + G +  IA  +F ++AKFA YGFN+SHA AY+ +++Q A+ K+HYP  F  
Sbjct: 648  EAFMSGSQQLGRNPQIAERLFSMMAKFAGYGFNRSHAYAYSALAFQLAYFKSHYPQVFYD 707

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      + +DA      +    +N      K+ D +I   L  IKG     
Sbjct: 708  VMLNYSSSD------YIKDAIGNGFSLARLDINRIPFHDKISDGKIVLGLKTIKGFPRDF 761

Query: 850  ARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A  I+E    +  + S+EDF +R+  K     VL  LV  G  D F  +R +++ +L N+
Sbjct: 762  ALWIIEDRKENGKYVSIEDFLTRIPKKYQKVEVLTPLVHIGLFDIFETNRQKIIGNLSNL 821

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++FA    ++ D      +   +   R+  EQ +LG   S HPL
Sbjct: 822  FTFV--------NELGSLFAESSYSWVD------YDDYSQIDRYNMEQELLGVGLSPHPL 867

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                 + +KM    Y+        +   +   + S +  +T+KG R+ +++ S+   + +
Sbjct: 868  ----HLAQKMATHPYQPISDLTVNSKATVLVQLESVRIIRTKKGDRMAFLSVSDGINKLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|218709034|ref|YP_002416655.1| putative DNA polymerase III subunit alpha [Vibrio splendidus LGP32]
 gi|218322053|emb|CAV18108.1| putative DNA polymerase III alpha chain [Vibrio splendidus LGP32]
          Length = 1030

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/1039 (24%), Positives = 439/1039 (42%), Gaps = 79/1039 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  +  L   S+YS LEGA     ++ +    +  A+A+TD  ++   ++         +
Sbjct: 2    SQQYSELFCQSNYSFLEGASHAEELVLQADFLRYKALAVTDECSVAGIVKVHSAIKQHKL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
                       + +                 +VLL    + Y  L  +++          
Sbjct: 62   SLKQIVGSMFWLNEE--------------CQVVLLCPNRQAYAELCRIITNARRRSS--- 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                 LS    +  +   +L           +                +    RL++ LQ
Sbjct: 105  KGHYQLSEWDIMSAKHCFIL-----------WLPQQKNEDAHWGQWLSQHHSGRLWIGLQ 153

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
            RH +  D++     V+L+  H+LP+ A    L  +         L A+ +   +++    
Sbjct: 154  RHLKQTDQHYTDYCVELSQHHQLPITACGGVLMHNANRLPLQHSLTAIKYQRPITEVGSH 213

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 +  L++ +++  IF    E LE +  I+  C F L       P  +  + +    
Sbjct: 214  LLANAERCLRSINKLSHIFK--AEWLEESNRISELCEFELDNLRYEYPSELIPQGE---- 267

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     G   R  QG         + +Q ++ EL +I  + +  +FL + D + 
Sbjct: 268  TPMSYLRMLVEKGKRTRFPQGV------PNNIQQIIEKELGLIDELDYPFFFLTIHDIVM 321

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK   I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +
Sbjct: 322  FAKSQGILY-QGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERDEPPDIDVDFEHE 380

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  +Q+D   K   N    
Sbjct: 381  RREEVIQYIYKKYGRERAALAATVISYRFKSAVRDVGKALGLQETQLDYFIKNT-NRRDK 439

Query: 486  PVSLQAIADDSRFREARLADPSVD--RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             +  QA     +  +  L   S+   + + +  ++ G  RH S H  G VI   PL +LV
Sbjct: 440  SLGWQA-----QLTQLGLQPDSLKGQQFIHLVNEIIGFPRHLSQHVGGFVISSGPLYELV 494

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVDLSL 600
            P+      D  + Q++   +E  GL+K D L L  L+ ++K  D + +   R + +    
Sbjct: 495  PVENAAMHDRTIIQWDKDDLETLGLLKVDVLALGMLSAIRKCFDLIKRIHGRSLTIAEIT 554

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
               DD + Y ++    T+GIFQ+ES      L  ++P    D++  +++ RPGPI  D +
Sbjct: 555  RLKDDPQVYGMIQRADTVGIFQIESRAQMSMLPRLKPRTYYDLVIQIAIVRPGPIQGDMV 614

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  R++G E I      ++ +L  T GV I+QEQV+++A + +G++  EAD LRRAM 
Sbjct: 615  HPFLKRRDGIEPISYPSKDVESVLSRTLGVPIFQEQVIKLAMVAAGFTGGEADQLRRAMA 674

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K    + K K + I G  K G     A  IF+ +  F +YGF +SH+A++AV++Y +A
Sbjct: 675  AWKKNGNVFKFKNKLIEGMQKRGYETGFAEQIFKQICGFGEYGFPESHSASFAVLAYCSA 734

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN---- 833
            W+K +YP  F A+ +  +        +  QDA++ N+ ++P  VN    +  V  +    
Sbjct: 735  WLKCYYPECFYASLLNSQPMGFYSPSQLVQDAQRHNVVVLPVCVNASQDNHTVIAHQNGL 794

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I   L  IKG      + ++       +       S+V    +N++ +E L  A AL  
Sbjct: 795  AIRLGLRQIKGFSEHGIQSVLANRPQSGYR----HPSQVKQLSMNKKDIELLASANALHN 850

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R Q   +   I   A             +F+   G   D          N      
Sbjct: 851  VSGDRFQTRWA---IMDSAS---------DLPLFSQVYGDVGDGHDEHALHKPNEMQDLL 898

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +   +G   + HP+ + +   R       ++ +     + + +  +V  KQ   T  G 
Sbjct: 899  EDFTSVGISLNKHPITLLEEAGRLGRFTHMKDLIQQRHKSMVTVVGLVTGKQAPGTAAG- 957

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + +VT  +         +
Sbjct: 958  -VTFVTLEDNTGNINVVVW 975


>gi|324995477|gb|EGC27389.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK678]
          Length = 1069

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1025 (29%), Positives = 496/1025 (48%), Gaps = 102/1025 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36   IQLDTKTVYSFMDSLIPIKKYVQKAKELGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +L +  ++                 + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 96   GLELSLIKEER-------------ELHLRLLALDSQGYRNLMK-VSTLKMMGQ------- 134

Query: 132  CLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              +W       +GL ++     G            VA+  L                   
Sbjct: 135  -KNWEDFQHLFKGLAVIVPAFDG------------VADLDL------------------- 162

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D Y              P +  +   +    D E   +L A+  +  + +     +  
Sbjct: 163  GLDFYVGVFPATPKQEFGWPTLPLHTVRYFDTGDLETLQMLRAIRENASLREIG--SLPN 220

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              +L     +   F +  PE+L N  ++ R   + +      LPRF      + ++    
Sbjct: 221  HEFLLAPDALAGAFKETFPESLANLEKLVRHVHYDIN-RELKLPRF------NRERPAVE 273

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ELR ++ AGL+ R        G   + Y++RLD EL+VI +M F  YFLIV D +++ + 
Sbjct: 274  ELRERSEAGLKKR--------GLTGKLYQERLDQELDVIHQMGFDDYFLIVWDLLRFGRS 325

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E
Sbjct: 326  QGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPE 385

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +     
Sbjct: 386  FIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLTT-- 443

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+    
Sbjct: 444  -AYEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL--KY 500

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D ET
Sbjct: 501  GEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIAEIDLEDAET 560

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G 
Sbjct: 561  LKLFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGL 620

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + 
Sbjct: 621  EQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMHRM 680

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F++GA K G S+T A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K +YP  F 
Sbjct: 681  QEDFVAGALKLGHSETKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAYYPDVFF 740

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA  F+ +  P S+N      K  D +I+  L  IKG+   
Sbjct: 741  DVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLPRD 794

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+
Sbjct: 795  LAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNL 854

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +A        ++  ++FA    ++++          + + +FE EQ ++G   S HPL
Sbjct: 855  FVFA--------DELGSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSDHPL 900

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                  L K   + +         +  R+ A V + +  +T+KG  + ++  S+  K+ +
Sbjct: 901  ----VKLAKEADQPFNWISDLTENSRARILAEVQTIKTIRTKKGENMAFLQVSDTKKKLD 956

Query: 1029 ANFFP 1033
               FP
Sbjct: 957  VTLFP 961


>gi|157149864|ref|YP_001450622.1| DNA polymerase III DnaE [Streptococcus gordonii str. Challis substr.
            CH1]
 gi|157074658|gb|ABV09341.1| DNA-directed DNA polymerase III alpha chain [Streptococcus gordonii
            str. Challis substr. CH1]
          Length = 1033

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1025 (29%), Positives = 487/1025 (47%), Gaps = 105/1025 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS ++  +S+   ++K        + I D +NL+ A  F ++  AAGIQ ++
Sbjct: 3    AQLDTKTVYSFMDSLVSIKKYVEKAKEFGYSHLGIMDMDNLYGAYHFLEETKAAGIQGLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  L++                    ++ LL   ++GY+ L+++ + + L          
Sbjct: 63   GLDLNL-------------VKDGQPLTLRLLAINSQGYRNLMKVSTLIMLDK-------- 101

Query: 132  CLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               W       +GL ++     G ID                          Y+ +    
Sbjct: 102  -KEWSDIQHLMQGLALIVPAYPG-IDDLDLGKDY------------------YIGVSPTT 141

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                               P +      +    D E   +L A+  +  + +      + 
Sbjct: 142  PL------------QEFSRPTLPLYTVRYFDTGDLETLQMLRAIRENVSLREVG-DLPSG 188

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             H L+   ++  IF    PE+LEN   + R   + +      LPRF      + ++    
Sbjct: 189  QHLLR-PEQLRQIFEQTFPESLENLEGLVRDIHYDIDTEL-KLPRF------NPERPAVE 240

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ELR ++ AGL+ R        G  +  Y++RLD EL VI +M F  YFLIV D +++ + 
Sbjct: 241  ELRERSEAGLKKR--------GLTSSLYQERLDQELAVIHKMGFDDYFLIVWDLLRFGRS 292

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E
Sbjct: 293  QGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERFTMPDIDIDIPDVYRPE 352

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             IRYV+++YG    AQI+T+ +  AK A+RDV +   +   ++  + K I          
Sbjct: 353  FIRYVRDRYGTLHAAQIVTYSTFGAKQAIRDVFKRFGVAEYELTNITKKIRFGDNLNT-- 410

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+    
Sbjct: 411  -AYEKNIAFRQIINSKLEYQKAFDIAKKIEGNPRQTSIHAAGVVMSDNDLTDQIPL--KY 467

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  + +  +  + + +  I  +D +T
Sbjct: 468  GEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEAVLKKYEIDIQIESIDLEDKKT 527

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G+
Sbjct: 528  LQLFAAGDTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGR 587

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E +VSI   +D +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM K 
Sbjct: 588  EAVVSIDESLDDILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNALEMHKM 647

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F+SGA K G S+  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 648  EEEFVSGAMKLGHSEKKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPEVFF 707

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA  F  ++ P ++NT     K  +N+I+  L  IKG+   
Sbjct: 708  DVLLNYSSSD------YITDALSFGFKLAPLTINTVPYRDKFEENQIFLGLKNIKGLPRD 761

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E     PF  +EDF  R+ S+      L  L+  G  D F  +R +++ +L N+
Sbjct: 762  LAYWIIEER---PFTGIEDFLLRLPSQYRKESFLIPLIQIGLFDSFESNRQKIISNLSNL 818

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              + +        +  ++FA    +++      +    + + +FE EQ +LG   S HPL
Sbjct: 819  FIFVE--------ELGSLFADSSYSWT------EVEDYSQAEKFELEQSILGVGLSDHPL 864

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                  +     K +         +  ++ A V S +  +T+ G  + ++  ++  K+ +
Sbjct: 865  ----MTIANATTKSFTWIGDLAENSRAKILAQVQSIKVIRTKNGENMAFLQVTDTKKKLD 920

Query: 1029 ANFFP 1033
               FP
Sbjct: 921  VTLFP 925


>gi|84393894|ref|ZP_00992637.1| putative DNA polymerase III alpha chain [Vibrio splendidus 12B01]
 gi|84375491|gb|EAP92395.1| putative DNA polymerase III alpha chain [Vibrio splendidus 12B01]
          Length = 1030

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/1039 (24%), Positives = 439/1039 (42%), Gaps = 79/1039 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  +  L   S+YS LEGA     ++ +    +  A+A+TD  ++   ++         +
Sbjct: 2    SQQYSELFCQSNYSFLEGASHAEELVLQADFLRYKALAVTDECSVAGIVKVHSAIKQHKL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
                       + +                 ++L+    + Y  L  +++          
Sbjct: 62   SLKQIVGSMFWLNEE--------------CQVILICPNRQAYAELCRIITNARRRSSKGH 107

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                           G  +++      +   +                +    RL++ LQ
Sbjct: 108  -----------YQLSGWDIMSAKHCFIL---WLPQQKNEDAHWGQWLSQHHSGRLWIGLQ 153

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
            RH +  D+      V+L+  H+LP+ A    L  +         L A+ +   +++    
Sbjct: 154  RHLKQTDQQYTDYCVELSQHHQLPITACGGVLMHNANRLPLQHSLTAIKYQRPITEVGSH 213

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 +  L++ +++  IF    E LE +  I+  C F L       P  +  + +    
Sbjct: 214  LLANAERCLRSINKLSHIFK--TEWLEESNRISELCKFELNSLRYEYPSELIPQGE---- 267

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     G + R  QG        +D +Q +D EL +I  + +  +FL + D + 
Sbjct: 268  TPMSYLRVLVERGKQARFPQGV------PRDIQQIIDKELGLIGELNYPFFFLTIHDIVM 321

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK   I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +
Sbjct: 322  FAKSQGILY-QGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERDEPPDIDVDFEHE 380

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  +Q+D   K   N    
Sbjct: 381  RREEVIQYIYQKYGRERAALAATVISYRFKSAVRDVGKALGLQETQLDYFIKNT-NRRDK 439

Query: 486  PVSLQAIADDSRFREARLADPSVD--RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             +  QA     +  +  L   S+   + + +  ++ G  RH S H  G VI   PL +LV
Sbjct: 440  SLGWQA-----QLTQLGLQPDSLKGQQFIHLVNEIIGFPRHLSQHVGGFVISSGPLYELV 494

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVDLSL 600
            P+      D  + Q++   +E  GL+K D L L  L+ ++K  D + +   R + +    
Sbjct: 495  PVENAAMHDRTIIQWDKDDLETLGLLKVDVLALGMLSAIRKCFDLIKRIHGRSLTIAEIT 554

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
               DD + Y ++    T+GIFQ+ES      L  ++P    D++  +++ RPGPI  D +
Sbjct: 555  RLKDDPQVYCMIQRADTVGIFQIESRAQMSMLPRLKPRTYYDLVIQIAIVRPGPIQGDMV 614

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  R++G E I      ++ +L  T GV I+QEQV+++A + +G++  EAD LRRAM 
Sbjct: 615  HPFLKRRDGIEPISYPSKDVESVLSRTLGVPIFQEQVIKLAMVAAGFTGGEADQLRRAMA 674

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K    + K K + I G  K G     A  IF+ +  F +YGF +SH+A++AV++Y +A
Sbjct: 675  AWKKNGNVFKFKNKLIEGMQKRGYETEFAEQIFKQICGFGEYGFPESHSASFAVLAYCSA 734

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN---- 833
            W+K +YP  F A+ +  +        +  QDA++ N+ ++P  VN    +  V ++    
Sbjct: 735  WLKYYYPECFYASLLNSQPMGFYSPSQLVQDAQRHNVVVLPVCVNASQDNHIVVEHQNGL 794

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I   L  IKG      + ++       +       S+V    +N++ +E L  A AL+ 
Sbjct: 795  AIRLGLRQIKGFSEHGIQSVLANRPQSGYR----HPSQVKQLSMNKKDIELLASANALNN 850

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R Q   +   I   A             +F+                  N      
Sbjct: 851  VSGDRFQTRWA---IMDSAS---------DLPLFSQAYDDAEAGHDEHALHKPNEMQDLL 898

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +   +G   + HP+ + +   R       ++ +     + + +  +V  KQ   T  G 
Sbjct: 899  EDFTSVGISLNKHPITLLEEAGRLGRFTHMKDLIQQRHKSMVTVVGLVTGKQSPGTAAG- 957

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + +VT  +         +
Sbjct: 958  -VTFVTLEDNTGNINVVVW 975


>gi|328474631|gb|EGF45436.1| error-prone DNA polymerase [Vibrio parahaemolyticus 10329]
          Length = 1024

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/1042 (25%), Positives = 458/1042 (43%), Gaps = 93/1042 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--KACAAGI 67
            S+  L   S++S L GA     ++ + A  +  AIAITD  ++   ++     +     I
Sbjct: 2    SYAELFCQSNFSFLTGASHAEELVLQAAFYRYHAIAITDECSVAGVVKAHATIEQHKLDI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G    ++ +                  IVLL    + Y  +  +++      +   
Sbjct: 62   KQIVGSMFWLNEE----------------CQIVLLCPCRKAYAEMCRIITNARRRSEKGS 105

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                      ++    L+ +       +      +             +   +RL+V +Q
Sbjct: 106  Y---------QLSEWDLMSIRHCLVLWLPTHQASDHYWG-----RWLNQHHNNRLWVAIQ 151

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH  G D    +   +LA+  +LP+ A    L  + E      +L A+ H   V +    
Sbjct: 152  RHLGGDDDAYTNHCEKLAHELQLPITACGGVLMHTAERLPLQHILTAIKHGCSVDKLGFE 211

Query: 247  RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R++  +  L+  +++V I+   PE LE +  IA  C F L       P  +         
Sbjct: 212  RLSNAERTLRPLNKLVRIYK--PEWLEESKYIADLCEFKLSDLKYEYPTELIPNG----Y 265

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     G E R  +G        +D  Q ++ EL +I  +K+  YFL + D + 
Sbjct: 266  TPNSYLRMLVEQGKERRFPEGV------PEDINQTIENELRLIEDLKYHYYFLTIHDIVM 319

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK+  I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +
Sbjct: 320  FAKQQGILY-QGRGSAANSVVCYCLEITAVDPRQISVLFERFISKERKEPPDIDVDFEHE 378

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG ER A   T  S + K+A+R+VG+AL +  +Q+D   K + N    
Sbjct: 379  RREEVIQYIYKKYGRERAALAATVISYRFKSAVREVGKALGIEETQLDFFIKNV-NRRDR 437

Query: 486  PVSLQAIADDSRFREARLADPSVD--RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                QA     +  E  L   S+   + +++  ++ G  RH S H  G VI   PL +LV
Sbjct: 438  SQGWQA-----QIIELGLQPESLKGQQFIQLVNEIIGFPRHLSQHVGGFVISSGPLYELV 492

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA---QRGVKVDLSL 600
            P+      D  + Q++   +E   L+K D L L  L  ++K    +    QR + +    
Sbjct: 493  PVENAAMEDRTIIQWDKDDLESLELLKVDVLALGMLNAIRKCFQLIEKHHQRSLSIAEIT 552

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
               DD   Y +L    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI  D +
Sbjct: 553  RRQDDPHVYRMLQKADTVGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGPIQGDMV 612

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  R+NG+E +      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM 
Sbjct: 613  HPFLKRRNGEEPVSYPSEAVKSVLERTMGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMA 672

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K   ++ K K + ++G  + G     A  IFE +  F +YGF +SH+A++AV++Y +A
Sbjct: 673  SWKKNGDLAKFKPKLLNGMQERGYDLAFAERIFEQICGFGEYGFPESHSASFAVLAYCSA 732

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GD 832
            W+K +YP EF  A +  +        +  QDAR+  ++++P  VN       +     G 
Sbjct: 733  WLKYYYPAEFYTALLNSQPMGFYSSSQLVQDARRHGVEVLPICVNHSYYQHHLIQRPNGR 792

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              +      +KG    +A  ++E      + S+++    V     +RR +E L  A A  
Sbjct: 793  LGVQLGFRLVKGFNEESATRLVERRPKTGYHSIQE----VKQILRSRRDIELLASANAFQ 848

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                +R             A+W   +  +    +F H      ++ ++   +  +     
Sbjct: 849  ILSGNRY-----------NARWAAMDSLSD-LPLFHH-----IEEPSVSYQAQPSEYESL 891

Query: 953  ENEQRVLGFYFSGHPLDVYKP--ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
              +    G   + HP+ + +   IL +      ++ V     + + +A +V  +Q   T 
Sbjct: 892  IEDYASTGLSLNRHPITLLEEAGILPRF--TRMKQLVDKEHKSLVTVAGVVTGRQSPGTA 949

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G  + + T  +         +
Sbjct: 950  AG--VTFFTLEDDTGNINVVVW 969


>gi|312862976|ref|ZP_07723216.1| DNA polymerase III, alpha subunit [Streptococcus vestibularis F0396]
 gi|322516651|ref|ZP_08069564.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            vestibularis ATCC 49124]
 gi|311101836|gb|EFQ60039.1| DNA polymerase III, alpha subunit [Streptococcus vestibularis F0396]
 gi|322124816|gb|EFX96243.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            vestibularis ATCC 49124]
          Length = 1036

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/1025 (28%), Positives = 491/1025 (47%), Gaps = 100/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS ++  + LN  + +       +I + D +NL++A  F+Q A   G++P+
Sbjct: 2    FAQLDTKSVYSFMDSVVDLNTYVKRAKELGYQSIGLMDRDNLYAAYHFAQLAIRNGLRPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + ++                       LL    +GY+ L++L + +     G++   
Sbjct: 62   IGIEANLFYDGRK-------------IPFRLLAKNNQGYKNLMKLATELSS---GQREFT 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   +L +I    LI+ +                         +                
Sbjct: 106  LFSDYLNDIA---LIIPS-----------------------EDW----------EPGMSL 129

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G + +   +        + P+V  +   +    D      L A++ +  +S+     +  
Sbjct: 130  GSEVFIGVRPEDAGKEFDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEASICPMN- 188

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               L +  EM S +SD+PEAL N  ++    ++        LPRF      +      ++
Sbjct: 189  -QLLFSPQEMESAYSDIPEALNNLEQLVSDITYQFDTDL-KLPRF------NRDMPAVDQ 240

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A +GL+        +K      Y++RLD EL++I +M F  YFLIV D +++ +  
Sbjct: 241  LRQLAQSGLD--------SKALREPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSR 292

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ AY L IT IDP++  LLFERFLN +R SMPD DID     R E 
Sbjct: 293  GYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNEERYSMPDIDIDLPDIYRSEF 352

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+++YG +  AQI+TF +  AK A+RDV +       ++ +L K I           
Sbjct: 353  LHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKISFRDNLT---S 409

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+         R  EI++ +EG  R  S HAAGIV+ D  L+  +P+     
Sbjct: 410  VYEKNMSFRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--KTG 467

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + L +   + +D+  I  +D +T 
Sbjct: 468  EDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGIAIDIKSIDLEDSQTL 527

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E +G    L+ ++P   E+++A  SL RPG  D    +  RK GKE
Sbjct: 528  ALFASGKTKGIFQFEQAGAINLLKRIKPTKFEEVVATTSLNRPGASDYTDNFIARKYGKE 587

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  I P++ P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM K  
Sbjct: 588  KVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFTLGKADLLRRAMSKKDANEMSKMS 647

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E F+ G+ + G    IA  +F ++AKFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 648  EEFMKGSRRFGRDPQIAERLFSMMAKFAGYGFNRSHAYAYSALAFQLAYFKTHYPQIFYD 707

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      + +DA +    +    +N      K+ D +I   L  IKG+    
Sbjct: 708  VMLNYSSSD------YIKDAIENGFSLASLDINRIPYLDKISDGKIVLGLKTIKGLPRDF 761

Query: 850  ARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A  I+E    +  + S+EDF +R+ SK     +L  L+  G  D F  +R +++ +L N+
Sbjct: 762  ALWIIEERKQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDIFEPNRQKIIGNLSNL 821

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++FA    ++       ++   + + R+  EQ +LG   S HPL
Sbjct: 822  FTFV--------NELGSLFAESSYSW------VEYEDYSQTERYSIEQDLLGVGLSTHPL 867

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                 + +KM  + Y+        +   +   + S +  +T+KG ++ +++  +   + +
Sbjct: 868  ----HLAQKMTSRPYQPISELALNSKATVLVQLESVRIIRTKKGDQMAFLSVFDGVNKLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|42521998|ref|NP_967378.1| DNA polymerase III, alpha chain [Bdellovibrio bacteriovorus HD100]
 gi|71151813|sp|Q6MQS6|DNAE2_BDEBA RecName: Full=Error-prone DNA polymerase
 gi|39574529|emb|CAE78371.1| DNA polymerase III, alpha chain [Bdellovibrio bacteriovorus HD100]
          Length = 1061

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/1056 (25%), Positives = 472/1056 (44%), Gaps = 84/1056 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            ++  FV L   S++S L+GA S   ++ +        +A+ D N L+  +   Q   +  
Sbjct: 21   RAKGFVELLGRSNFSFLQGASSPEEMVSQAVEFGYDGMALCDLNGLYGVVRGFQTIQSPS 80

Query: 67   I---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            +    P +       +   L +T++         S+VL+    +GY  L E+++      
Sbjct: 81   LFTASPQVKENFHYLIGSELTLTDES--------SVVLIPMNKQGYSHLCEILTLGK-RQ 131

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
              K   ++ L  +++   +GL+ L                     +R    +K+F +RLY
Sbjct: 132  AAKGFSKLSLEQIEKY-NQGLLCLALPPWTD--------------ERYEKLEKIFDNRLY 176

Query: 184  VNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L R   ++      Q   L   ++  L  T      S E     DVL    H T +++
Sbjct: 177  LPLWRDLTWESQEFCRQGFALEEKYKAQLFVTQRPFMHSPERKPLFDVLTCTLHHTTLAE 236

Query: 243  -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             K++     +  LK+  ++  ++ D  + +E TVEI+ R +F L       P        
Sbjct: 237  AKNKLIQNSERCLKSLEDISWLWQDRLDLVEKTVEISARVTFSLNEIRYRYPASSLPSGM 296

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                     +R+  + G E R  +G   K        ++++ EL +I  +++  YFL + 
Sbjct: 297  ----TPTEYMRHLTLKGAESRYPEGIPDKA------LKQIEHELELIKDLQYEDYFLTLK 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +   +A +  I    GRGS A SV  + L +T IDP++  LLFERFL+ +R   PD DID
Sbjct: 347  EICDFASERKILY-QGRGSAANSVVCFCLGLTAIDPVKMDLLFERFLSRERREPPDIDID 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F   RR+EVI+++  KY     A + T    +++ A+R+  +   MP ++++ + K +  
Sbjct: 406  FEHSRREEVIQHIYEKYNERHAAMVCTVIRYRSRMAIRETAKVFGMPLAKINAMIKFMGR 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            D    +   A+A D       +        + ++Q+L G  RH   H  G +I   P+++
Sbjct: 466  DGMKRLLDPAVAAD-----FGMEPGPWKMFMALAQQLHGFPRHLGIHTGGFLITQDPITE 520

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            +VP+ +   +   V Q+N   ++   L+K D L L  LT L+K  D L   +G    L+ 
Sbjct: 521  MVPVEKATMNGRYVIQWNKDDVDFLRLMKIDVLSLGMLTCLRKCFDLLRDVKGRDYSLAT 580

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY ++    T+G+FQ+ES      L  MQP    D++  ++L RPGP+   +V
Sbjct: 581  LPADDKPTYDMICRAETVGVFQIESRAQMNTLPRMQPRNFYDLVIEIALIRPGPLQGGMV 640

Query: 661  YNN---RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +     R+N  ++I   HP ++P+LK+T G+ I+QEQVM++   ++ ++  EAD LRR M
Sbjct: 641  HPFLKLRQNPPKEIKYAHPALEPILKKTMGIPIFQEQVMKMVVAVADFTPGEADELRRVM 700

Query: 718  GK--KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
                K K  M   ++R  +G +++GIS   A  IF+ +  FA+YGF +SH+A++A+++Y 
Sbjct: 701  SSAWKRKATMGGIEQRLRTGFARHGISSEYADQIFKTIEGFANYGFPESHSASFALLTYA 760

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            + ++K HYP  F    +  +       +    +A++  + + P  V     D+ +     
Sbjct: 761  SCYLKCHYPDVFACGLLNSQPMGFYAPRTIIAEAQRNGVVVAPLDVQKSDYDYTIEKTAA 820

Query: 836  ----YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                   L +I G+     R I ++   +  +  L DF  R       R VL  L  AGA
Sbjct: 821  GDLLRVGLRSIYGIPEVLIRRIEDSRKEEGLYIDLADFIRRTQL---PRSVLLKLAAAGA 877

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF---SDKITLEKFSVEN 947
             + F  +  +L+ +L+++            ++   ++ H K  F    D    E    E+
Sbjct: 878  FESFNSNVRELIWNLESL----------SLDQQSFLWGHPKEQFELGEDDDEPEHLPFES 927

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYK-------PILRKMGIKGY---EESVATIRGNNIRL 997
            +  R   E    G+    HP+ V +         LR+     Y   E+         +R+
Sbjct: 928  NWDRLRREYDSKGYSVESHPMSVLRTYLHSKSEALREKRFVPYFSSEDLKRMKTKTKVRV 987

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            A +V   Q+  T KG  + ++T  +          P
Sbjct: 988  AGLVAITQRPPTAKG--MCFITLEDEFGFVNIVIHP 1021


>gi|298294344|ref|YP_003696283.1| DNA polymerase III subunit alpha [Starkeya novella DSM 506]
 gi|296930855|gb|ADH91664.1| DNA polymerase III, alpha subunit [Starkeya novella DSM 506]
          Length = 1140

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/1080 (23%), Positives = 434/1080 (40%), Gaps = 93/1080 (8%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
               P F  +   S++S L GA     ++ +       +I I D N +   +         
Sbjct: 4    ASPPFFAEMVTASNFSFLRGASKAEWLVLQSLLLGHASIGIADRNTVAGVVRAYAALKDI 63

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPF-------------------------------- 93
            G +     ++    +   K   + +                                   
Sbjct: 64   GERFTGFWKVPKQERKEPKKGEEDEVTRLIRQWAEAAADAGLGPELPPFTLVVGARLVFA 123

Query: 94   PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG 153
               P IV      +G+ RL  L++   L    K    + L  L        ++L      
Sbjct: 124  DGTPDIVAHAQDRDGWGRLCRLLTAGNLRGA-KGECILKLDDLLADARGLSLILMPPR-- 180

Query: 154  PIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLV 212
             +          V    L    +     L++     R G DR R + +  LA    +PL+
Sbjct: 181  DVPAKRLAGLKDV----LAQLDEAAPGSLWLGAAMVRKGDDRRRLAALKALATKTRVPLL 236

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEAL 271
            ATN+ L+    + +  +VL  +     +    R      + +LK   EMV +F D PEA+
Sbjct: 237  ATNDVLYHHPAERDLQNVLTCIREGVTIEAAGRLLDANAERHLKPPQEMVRLFRDAPEAV 296

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
            E T     R  F L       P              + +L         +R  +G   K 
Sbjct: 297  EETRNFLARIDFSLGDLKYEYPEEPVPPG----YTPQAKLEELTWQRAAIRYPEGVPDK- 351

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
                    +L+ EL +I  + ++ YFL + D +++A+K  I +  GRGS A S   Y L 
Sbjct: 352  -----VVGQLNTELALIGELGYASYFLTIRDIVEFAEKERI-LCQGRGSAANSAVCYVLG 405

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT +DP    LLFERFL+ +R   PD D+DF  +RR+EVI+YV  +YG  R   + T  S
Sbjct: 406  ITAVDPFESELLFERFLSKERREPPDIDVDFEHERREEVIQYVYRRYGRHRAGIVATVIS 465

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVD 509
             + ++A+RDVG+AL +      RL   +       +       DS+ REA L  ++P V 
Sbjct: 466  YRPRSAIRDVGKALGLTEDVTARLAGTVWGSWGDDIK------DSQAREAGLDPSNPMVA 519

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            R + ++ +L G  RH S H  G V+    L + VP+      D    +++   I+  GL+
Sbjct: 520  RAIGLAVRLLGFPRHLSQHVGGFVLTQNRLDETVPIGNAAMKDRTFIEWDKDDIDTLGLL 579

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K D L L  LT ++K+LD + +   +   L+ +P +  + Y +L    ++G+FQ+ES   
Sbjct: 580  KVDVLALGMLTCIRKALDLMREHEGIDYGLAEVPREQPDVYAMLQKGDSIGVFQVESRAQ 639

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHP-------LID 679
               L  ++P  + D++  V++ RPGPI    +  Y  R+   E IV   P        + 
Sbjct: 640  INMLPRLKPRKLYDLVIQVAIVRPGPIQGNMVHPYLRRRERSEPIVYPSPGPQYRQDELY 699

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASK 738
             +L+ T GV ++QEQ M++A + + +S  EA+ LRRAM   +    + K +   I    +
Sbjct: 700  DVLERTLGVPLFQEQAMKLAMVAAEFSSEEANQLRRAMATFRNLGTIGKFQGMLIGRMVR 759

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             G  +  A   FE +  F +YGF +SHAA++A + Y +A++K  +P  F  A +  +   
Sbjct: 760  RGYERAFAERCFEQIKGFGEYGFPESHAASFAKLVYISAFIKCRHPAAFAVALLNSQPMG 819

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI------YYSLAAIKGVGTTTARH 852
                 +  +DAR+  ++I PP VN    D  +  +           L  I G     +  
Sbjct: 820  FYAPAQIVRDAREHGVEIRPPDVNYSFHDNTLERDAPGESLALRLGLRQIDGFSEEWSER 879

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            ++EA A      +E    R     L    L  L  A A    G  R +    +  +   A
Sbjct: 880  LVEARAGGFVRDIETLFRRA---GLPVGALRKLADADAFGSLGLDRREAAWIVRRLPNDA 936

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
                         +FA  +             +     +   + +       GHP+ + +
Sbjct: 937  ----------PLPLFAAAQARELGADADAHLPLMPLPEQIAVDYQTTRLSLKGHPMGMLR 986

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +    G+    E  A   G  +R A +V+ +Q+    KG+ + ++T  +         +
Sbjct: 987  EVFAAEGVASSAEVSALRDGTYVRAAGVVLVRQRPG--KGNAV-FMTLEDETGIVNVLLW 1043


>gi|94984363|ref|YP_603727.1| DNA polymerase III, alpha subunit [Deinococcus geothermalis DSM
            11300]
 gi|94554644|gb|ABF44558.1| DNA polymerase III, alpha subunit [Deinococcus geothermalis DSM
            11300]
          Length = 1322

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/718 (43%), Positives = 443/718 (61%), Gaps = 19/718 (2%)

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
              HA    +R ++EL+VI  M F  YFLIVAD+I WAK   I VGPGRGSGAGS+ AYA+
Sbjct: 462  HQHALTVLRRAEYELSVINNMGFPDYFLIVADYIGWAKDQGISVGPGRGSGAGSLVAYAI 521

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             IT++DPL F LLFERFLNPDR+SMPDFDIDF   RR EVI YVQ KYG ++VAQI TFG
Sbjct: 522  RITNLDPLEFELLFERFLNPDRISMPDFDIDFNDARRGEVIGYVQGKYGDDKVAQIATFG 581

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVD 509
            ++ +KA L+DV R + + Y++VD++ KLIP       SL QA       ++    D  + 
Sbjct: 582  TMASKACLKDVARVMGLEYAKVDKVSKLIPIKFGKSYSLEQAREAVPDIQQMLAEDAQLR 641

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
               E +QKLEGL RHAS HAAG+VIG   L+ LVP+ RD   +  V Q++MK +E  GLI
Sbjct: 642  EAYEFAQKLEGLTRHASVHAAGVVIGRSQLTDLVPVMRDTSGEGMVCQYDMKAVEDIGLI 701

Query: 570  KFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGL+TL+ L ++   + + +GV++D   IPFDD +T+ LL+   T G+FQLE +G+
Sbjct: 702  KMDFLGLRTLSFLDEAKRIMRESKGVEIDFDAIPFDDEKTFELLSRGDTKGVFQLEGAGI 761

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS---IH--PLIDPMLK 683
              A   ++P  + DIIAL +LYRPGP++NI  Y  R +G E +      H    ++ +L 
Sbjct: 762  ADASRRLKPRRLADIIALSALYRPGPMENIPTYVRRHHGAEPVTYDEFPHSAKWLEKILA 821

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+ +YQEQ+MQIA  ++GYSL  AD+LRRAMGKK  EEM +Q++ F+ GA KNG+ K
Sbjct: 822  ETYGIPVYQEQIMQIASEVAGYSLGGADLLRRAMGKKDAEEMKRQRQLFVEGAEKNGVPK 881

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                 +F+LL  FA+YGFNKSH+AAY VI+YQTAW+K +YPVEF+AA +T+E  + +K+ 
Sbjct: 882  EEGNRLFDLLDAFANYGFNKSHSAAYGVITYQTAWLKANYPVEFMAALLTVERRDSDKVA 941

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862
            ++  DAR+ N++++PP +N    DF V    I + L AIKG+G    + I+E    + PF
Sbjct: 942  EYVSDARKMNVRVLPPDINRSSADFAVHGEEILFGLYAIKGLGEGAVQKILEEREKNGPF 1001

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             SL DFCSR+  K  NR+ +ESL+ +GA D FG  R QL++SL+    +AQ       + 
Sbjct: 1002 RSLADFCSRLGHKVCNRKAMESLIKSGAFDGFGE-RHQLMESLEEAMAWAQGAAALAQSG 1060

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
             + +F   +     K+     +      R   E+  LG Y SGHPL+ ++  LR+     
Sbjct: 1061 MDALFGMAETAPEPKLKA-GVAPYTDLQRLAIEKEALGLYISGHPLEQHEG-LREAASCR 1118

Query: 983  YEES------VATIRGNNIR--LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +            G  ++  LA M+ +  +K T+ G  +     ++ + + E   F
Sbjct: 1119 ISDLDTWFQAQNVAPGKRVKAVLAGMIENVVKKPTKSGGMMARFILADESGQTELVAF 1176



 Score =  264 bits (674), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 140/327 (42%), Gaps = 11/327 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAAD--QQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           F HL  H+ YSLL+GA  L ++L  +       PA A+TD  N+  A+ F   A   G++
Sbjct: 24  FAHLHQHTQYSLLDGAAKLKDLLKWVKEVTPHDPACAMTDHGNMHGAVHFYNYASQLGVK 83

Query: 69  PIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           PI+G +  +      +   + G +    +  + LL     GYQ L  L SR Y       
Sbjct: 84  PILGYEAYVVPGFGTRRDKKPGVSGEKGIFHLTLLARDFTGYQNLCRLSSRGYTEG-YYY 142

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             RI    LQE   +G+I  +G     + +         A+ RLL ++ LFG+  ++ +Q
Sbjct: 143 KPRIDHELLQE-HHQGVIAFSGCLGSEVQQLLLQGREDEAKARLLWYRDLFGENYFIEIQ 201

Query: 188 RHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H   ++ R + +++  A    + +VATN+  ++ + D  AH+ L+A+     ++ ++R 
Sbjct: 202 DHGLPEQKRNNPILRAWAQELGIGMVATNDGHYVKKTDATAHEALLAIQTKATLADENRF 261

Query: 247 RVTPDHYL-KNRSEMVSIFS---DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           +   D +  K   EM           E  +NT  IA  C+  L V    + +       +
Sbjct: 262 KFPCDEFYVKGLEEMQKALPVAEWGEEPFDNTAHIASICNVDLPVGKKRVYQMPALPIPE 321

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIA 329
             +    ELR +   G   R       
Sbjct: 322 -GRTMAEELRVQTYRGAMKRYPAHVTE 347


>gi|262282918|ref|ZP_06060685.1| DNA-directed DNA polymerase subunit III alpha [Streptococcus sp.
            2_1_36FAA]
 gi|262261170|gb|EEY79869.1| DNA-directed DNA polymerase subunit III alpha [Streptococcus sp.
            2_1_36FAA]
          Length = 1033

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/1025 (28%), Positives = 488/1025 (47%), Gaps = 105/1025 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS ++  +S+   ++K        + I D +NL+ A  F ++   AGIQ ++
Sbjct: 3    AQLDTKTVYSFMDSLVSIKKYVEKAKEFGYSHLGIMDMDNLYGAYHFLEETKVAGIQGLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  L++                    S+ LL   ++GY+ L+++ + + L          
Sbjct: 63   GLDLNL-------------VKDGQPLSLRLLAINSQGYRNLMKVSTLIMLDK-------- 101

Query: 132  CLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               W       +GL ++     G ID                          Y+ +    
Sbjct: 102  -KEWSDIQHLMQGLALIVPAYPG-IDDLDLGKDY------------------YIGVSPTT 141

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                               P +      +    D E   +L A+  +  + +      + 
Sbjct: 142  PL------------QDFSRPTLPLYTVRYFDTGDLETLQMLRAIRENVSLREVG-DLPSG 188

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             H+L+   ++   F    PE+LEN   + +   + +      LPRF      + ++    
Sbjct: 189  QHFLR-PEQLRDAFEKTFPESLENLERLVQDVHYDIDTEL-KLPRF------NPERPAVE 240

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ELR ++ AGL+ R        G  +  Y++RL+ EL VI +M F  YFLIV D +++ + 
Sbjct: 241  ELRERSEAGLKKR--------GLTSSLYQERLNQELAVIHQMGFDDYFLIVWDLLRFGRS 292

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E
Sbjct: 293  QGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPE 352

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             IRYV+++YG    AQI+T+ +  AK A+RDV +   +   ++  + K I    +     
Sbjct: 353  FIRYVRDRYGTLHAAQIVTYSTFGAKQAIRDVFKRFGVAEYELTNITKKIRFGDSLST-- 410

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+    
Sbjct: 411  -AYEKNIAFRQIINSKLEYQKAFDIAKKIEGNPRQTSVHAAGVVMSDNDLTDQIPL--KY 467

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  + +  +  + + +  I  +D +T
Sbjct: 468  GEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEAVQKKYEIDIQIESIDLEDKKT 527

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G+
Sbjct: 528  LQLFAAGDTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGR 587

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E +VSI   +D +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM K 
Sbjct: 588  EAVVSIDESLDDILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNALEMHKM 647

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F+SGA K G S+  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 648  EEEFVSGAMKLGHSEKKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPEVFF 707

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA  F  ++ P ++NT     K  +N+I+  L  IKG+   
Sbjct: 708  DVLLNYSSSD------YITDALSFGFKLAPLTINTVPYHDKFEENQIFLGLKNIKGLPRD 761

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E     PF  +EDF  R+ S+      L  LV  G  D F  +R +++ +L N+
Sbjct: 762  LAYWIIEER---PFTGIEDFLLRLPSQYRKESSLIPLVQIGLFDSFEPNRQKIISNLSNL 818

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              + +        +  ++FA    ++++          + + +FE EQ +LG   S HPL
Sbjct: 819  FIFVE--------ELGSLFADSSYSWTEA------EDYSQAEKFELEQSILGVGLSDHPL 864

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                  + K   + +         +  ++ A V S +  +T+ G  + ++  ++  K+ +
Sbjct: 865  ----MTIAKATTESFSWIGDLAENSRAKILAQVQSIKVIRTKNGENMAFLQVTDTKKKLD 920

Query: 1029 ANFFP 1033
               FP
Sbjct: 921  VTLFP 925


>gi|324993220|gb|EGC25140.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK405]
          Length = 1069

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1025 (29%), Positives = 495/1025 (48%), Gaps = 102/1025 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36   IQLDTKTVYSFMDSLIPIKKYVQKAKELGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +L +  ++                 + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 96   GLELSLIKEER-------------ELHLRLLALDSQGYRNLMK-VSTLKMMGQ------- 134

Query: 132  CLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              +W       +GL ++     G            VA+  L                   
Sbjct: 135  -KNWEDFQHLFKGLAVIVPAFDG------------VADLDL------------------- 162

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D Y              P +  +   +    D E   +L A+  +  + +     +  
Sbjct: 163  GLDFYVGVFPATPKQEFGWPTLPLHTVRYFDTGDLETLQMLRAIRENASLREIG--SLPN 220

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              +L     +   F +  PE+L N  ++ R   + +      LPRF      + ++    
Sbjct: 221  HEFLLAPDALAGAFKETFPESLANLEKLVRHVHYDIN-RELKLPRF------NRERPAVE 273

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ELR ++ AGL+ R        G   + Y++RLD EL+VI +M F  YFLIV D +++ + 
Sbjct: 274  ELRERSEAGLKKR--------GLTGKLYQERLDQELDVIHQMGFDDYFLIVWDLLRFGRS 325

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E
Sbjct: 326  QGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPE 385

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +     
Sbjct: 386  FIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLTT-- 443

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+    
Sbjct: 444  -AYEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL--KY 500

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D ET
Sbjct: 501  GEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIAEIDLEDAET 560

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E  G    L  +QP C E+++A  SL RPG  D I  +  RK+G 
Sbjct: 561  LKLFAAGQTKGIFQFEQPGAISLLNRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGL 620

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + 
Sbjct: 621  EQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAAEMHRM 680

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 681  QEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAFFKAHYPDVFF 740

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA  F+ +  P S+N      K  D +I+  L  IKG+   
Sbjct: 741  DVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLPRD 794

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+
Sbjct: 795  LAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNL 854

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +A        ++  ++FA    ++++          + + +FE EQ ++G   S HPL
Sbjct: 855  FVFA--------DELGSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSDHPL 900

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                  L K   + +         +  ++ A V + +  +T+KG  + ++  S+  K+ +
Sbjct: 901  ----VKLAKEADQPFSWISELTENSRAKILAQVQTIKTIRTKKGENMAFLQVSDTKKKLD 956

Query: 1029 ANFFP 1033
               FP
Sbjct: 957  VTLFP 961


>gi|94499703|ref|ZP_01306240.1| putative DNA polymerase III alpha chain [Oceanobacter sp. RED65]
 gi|94428457|gb|EAT13430.1| putative DNA polymerase III alpha chain [Oceanobacter sp. RED65]
          Length = 1023

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/1033 (26%), Positives = 457/1033 (44%), Gaps = 76/1033 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L   S++S L+GA     +  +    +  AIAITD  ++   +          +  
Sbjct: 2    SYAELFCQSNFSFLQGASHPEELAVQAEFLEYNAIAITDECSVAGVVRAHTAIKEHSLSI 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
             +       + D                 IVLL    + Y  L  ++S      + K   
Sbjct: 62   KLIVGSYFILDD---------------FHIVLLCPNRDAYAELCRIISNARRRSE-KGQY 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L  +  +  + L   +S   + +   N             K    R ++   RH
Sbjct: 106  HLDRWDL--MSIKHCLCLWLPNSSNNNASEMKNDY-----WAQWLNKYHKGRSWIACMRH 158

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPR 247
                D         L+ T +LP+VA    L  S      H VL A+ H T V    D   
Sbjct: 159  LESNDAEHIQYCNTLSKTSDLPIVACGGVLMHSPNRQSLHHVLTAIRHKTTVEDCQDGRL 218

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               +  L+  S++  ++   PE ++ ++ IA RC+F L       P  +  +     K  
Sbjct: 219  SNTERALRPISKIAKLYK--PEWIQESIRIAERCTFDLSELRYEYPAELVPDN----KSA 272

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR+    G ++R  +G         D +Q +D EL +I  +K+  YFL + D + +A
Sbjct: 273  MEHLRDLVKHGSQLRFPEGV------PSDIQQTIDKELTLIEELKYPYYFLTIHDLVMFA 326

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+  I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +RR
Sbjct: 327  KRQKILF-QGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERDEPPDIDVDFEHERR 385

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG ER A   T  S + K A+RDVG+AL +  SQ+D   K I       +
Sbjct: 386  EEVIQYIYGKYGRERTALAATVISYRLKMAIRDVGKALGLHESQLDFFIKNI-FRRDRSL 444

Query: 488  SLQAIADDSRFREARLADPSVD--RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            + Q     S+  E  L   S    + + +  ++ G  RH S H  G VI   PL +LVP+
Sbjct: 445  NWQ-----SQIMELGLNPESYKGQQFIHLVNEILGFPRHLSQHVGGFVISRGPLYELVPV 499

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPF- 603
                     V Q++   +E  GL+K D L L  LT ++K+   + Q+  +   ++ I   
Sbjct: 500  ENAAMEARTVIQWDKDDLESLGLLKVDVLALGMLTAIRKAFSLIQQQHKQSLSIAHITAL 559

Query: 604  -DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             DD + Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI  D +  
Sbjct: 560  GDDPDVYKMIQQADTVGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGPIQGDMVHP 619

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            +  R+NG+E I      ++ +L  T GV I+QEQV+++A + +G+S  EAD LRRAM   
Sbjct: 620  FLKRRNGEESIDYPSKEVEAVLSRTLGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMASW 679

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K   ++   +++ I+G  K G     A  ++  +  F +YGF +SH+A++AV++Y +AW+
Sbjct: 680  KKTGKLKPFRDKLINGMQKRGYEAEFAERVYMQICGFGEYGFPESHSASFAVLAYVSAWL 739

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K +YP+EF AA +           +  QDA++  I I+P  VN    +  + D ++   L
Sbjct: 740  KYYYPLEFYAALLNSLPMGFYSASQLIQDAKRHGIHILPTCVNHSQYEHIIEDRKMRLGL 799

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
              I G+  + A+ I++    K +   ++      S  + R+ LESL  A AL     +R 
Sbjct: 800  HMISGLSESAAQEIIKQRPSKGYQHTQELI----SLHMTRKDLESLASANALQAISGNRF 855

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            +    L N Q+YA  + K + N                      S  +       +    
Sbjct: 856  ETRWQLSN-QEYALPLLKEQCN-----------------HYHLNSEPSEYENLVEDYAAT 897

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G     HPL +        GI   ++       + + +A +V +KQ   T  G  + ++T
Sbjct: 898  GLTLGKHPLQLLLESGLLQGITTSDQLKNKAHRSLVTVAGVVTAKQAPGTAAG--VTFMT 955

Query: 1020 FSEPAKEYEANFF 1032
              +         +
Sbjct: 956  LEDHLGNMNVIVW 968


>gi|299134862|ref|ZP_07028054.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2]
 gi|298590672|gb|EFI50875.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2]
          Length = 1108

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/1071 (24%), Positives = 447/1071 (41%), Gaps = 100/1071 (9%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   +  + + +++S L G       + + +  + P I I D N L   +    +     
Sbjct: 2    KVTDYAEIGITTNFSFLRGGSQPQEYVHQASEHRLPVIGIADRNTLAGVVRAYSELANHE 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++      +       L  T          P I++       Y RL +L+S   L  + K
Sbjct: 62   VKYKPRLLI----GARLVFT-------DGTPDILVYPRDRAAYGRLCQLLSHGKLQAE-K 109

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                + L  L +     L++LT               + VA K L   K+   D +++  
Sbjct: 110  GECLLTLDDLLDFSEGQLLVLTLPHRFE---------TTVALKVLGRLKQSRADGVWLAA 160

Query: 187  QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV-VSQKD 244
               +RG DR R S++ Q+A T  +PL+ATN+ L+         DVL  +   T   +   
Sbjct: 161  SLLYRGDDRRRLSRLYQIAATGRVPLLATNDVLYHHPARRPLQDVLTCILEKTTIHAIGK 220

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            + +   + ++K   EMV +F DLPEA+  T+  A R +F L       P         + 
Sbjct: 221  KLQANAERHMKPGYEMVRLFRDLPEAVAETMRFADRITFALDELKYQYPDEPVP----LG 276

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K  +  L +   AG++     G   K       +  ++ EL +I ++ ++ YFL V D +
Sbjct: 277  KTAQEHLTDLVNAGIQSYFPSGIDEK------LQATIEKELRLIEKLGYAHYFLTVHDIV 330

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            Q+A+  N+ +  GRGS A S   Y L IT ++P    +LFERF++  R+  PD D+DF  
Sbjct: 331  QYARSQNV-LCQGRGSAANSAVCYMLGITSVNPAETDVLFERFISEKRLEPPDIDVDFEH 389

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EV++YV  +YG  R A + T    + ++A+RDVG+AL +       L   +     
Sbjct: 390  SRREEVMQYVYRRYGRHRAAIVATVIHYRPRSAIRDVGKALGLTEDVTAALADTVWGSWG 449

Query: 485  HPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              VS      D + R+A     +  + R +E++ +L    RH S H  G V+    L+  
Sbjct: 450  TGVS------DMQIRQAGFDPQNGMIRRAVELATELIEFPRHLSQHVGGYVLTQDSLNTY 503

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA----QRGVKVDL 598
            VP+      D    +++   I+   ++K D L L  LT ++K  D +A    +R    D+
Sbjct: 504  VPIGNAAMEDRTFIEWDKDDIDTLKMMKVDVLALGMLTCIRKCFDLVADHKGKRYQLSDI 563

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            +    D    + +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   
Sbjct: 564  NAEKDDSGPVFDMLCRGESLGVFQVESRAQMNMLPRLKPRTFYDLVIEVAIVRPGPIQGN 623

Query: 659  VVY---NNRKNGKEKIVSIHP------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            +V+     R+   E+I   +P       +  +L +T GV ++QEQ M+IA   + ++  E
Sbjct: 624  MVHPYLKRRQMKPEEIEYPYPKSGNKNELKDVLCKTLGVPLFQEQAMRIAMAAAEFTPEE 683

Query: 710  ADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            A+ LRRAM   +    M K ++R +    K G     A + F+ +  F  YGF +SHAAA
Sbjct: 684  ANGLRRAMATFRNVGTMPKFEKRMVGRMIKRGYDPAFAQSCFDQIKGFGSYGFPESHAAA 743

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +A + Y +AW+K  +P  F    +  +        +   DARQ  +++    V+      
Sbjct: 744  FAQLVYVSAWLKCFHPDAFACGLLNSQPMGFYAPAQIVGDARQNGVEVREIDVSHSFSQN 803

Query: 829  KVG-----DNRIYYSLAAIKGV------------------GTTTARHIMEASADKPFDSL 865
             +G      + ++     I G                          I+ A   + F SL
Sbjct: 804  TLGERSGKYHVLHLGFRQIDGFKCADPDEERWRRIQGKTKSEDWGEAIVAARLRQSFTSL 863

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
            EDF       KL +R L  L  A A    G  R   L ++  +                 
Sbjct: 864  EDFAR---ETKLPKRALILLADADAFRSLGLDRRSALWAIRRLPDNVS----------LP 910

Query: 926  IF---AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
            +F   A  +    D   L +  +    V    + + +     GHP++  +    K GI  
Sbjct: 911  LFQSTAAREQPDEDSAPLPQMPLPEEVV---ADYQTIRLSLKGHPMEFLRATFTKQGIVS 967

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                        +R A +V+ +Q+  + KG  + ++T  +         +P
Sbjct: 968  CAAIAHENDKRRVRCAGVVLVRQRPGSSKG--VVFMTLEDETGIANIVVWP 1016


>gi|28898810|ref|NP_798415.1| putative DNA polymerase III alpha chain [Vibrio parahaemolyticus RIMD
            2210633]
 gi|153838840|ref|ZP_01991507.1| DNA polymerase III, alpha subunit, putative [Vibrio parahaemolyticus
            AQ3810]
 gi|260365606|ref|ZP_05778133.1| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus K5030]
 gi|260879151|ref|ZP_05891506.1| error-prone DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|260898463|ref|ZP_05906959.1| error-prone DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|260899599|ref|ZP_05907994.1| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus AQ4037]
 gi|71151841|sp|Q87N39|DNAE2_VIBPA RecName: Full=Error-prone DNA polymerase
 gi|28807029|dbj|BAC60299.1| putative DNA polymerase III alpha chain [Vibrio parahaemolyticus RIMD
            2210633]
 gi|149747724|gb|EDM58624.1| DNA polymerase III, alpha subunit, putative [Vibrio parahaemolyticus
            AQ3810]
 gi|308089025|gb|EFO38720.1| error-prone DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|308093560|gb|EFO43255.1| error-prone DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|308106899|gb|EFO44439.1| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus AQ4037]
 gi|308114675|gb|EFO52215.1| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus K5030]
          Length = 1024

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/1042 (25%), Positives = 455/1042 (43%), Gaps = 93/1042 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--KACAAGI 67
            S+  L   S++S L GA     ++ + A  +  AIAITD  ++   ++     +     I
Sbjct: 2    SYAELFCQSNFSFLTGASHAEELVLQAAFYRYHAIAITDECSVAGVVKAHATIEQHKLDI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G    ++ +                  IVLL    + Y  +  +++      +   
Sbjct: 62   KQIVGSMFWLNEE----------------CQIVLLCPCRKAYAEMCRIITNARRRSEKGS 105

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                      ++    L+ +       +      +             +   +RL+V +Q
Sbjct: 106  Y---------QLSEWDLMSIRHCLVLWLPTHQASDHYWG-----RWLNQHHNNRLWVAIQ 151

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH  G D    +   +LA+  + P+ A    L  + E      +L A+ H   V Q    
Sbjct: 152  RHLGGDDDAYTNHCEKLAHELQQPITACGGVLMHTAERLPLQHILTAIKHGCSVDQLGFE 211

Query: 247  RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R++  +  L+  +++V I+   PE LE +  IA  C F L       P  +         
Sbjct: 212  RLSNAERALRPLNKLVRIYK--PEWLEESKYIADLCEFKLSDLKYEYPTELIPNG----Y 265

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     G E R  +G        +D  Q ++ EL +I  +K+  YFL + D + 
Sbjct: 266  TPNSYLRMLVEQGKERRFPEGV------PEDINQTIENELRLIEDLKYHYYFLTIHDIVM 319

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK+  I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +
Sbjct: 320  FAKQQGILY-QGRGSAANSVVCYCLEITAVDPRQISVLFERFISKERKEPPDIDVDFEHE 378

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG ER A   T  S + K+A+R+VG+AL +  +Q+D   K + N    
Sbjct: 379  RREEVIQYIYKKYGRERAALAATVISYRFKSAVREVGKALGIEETQLDFFIKNV-NRRDR 437

Query: 486  PVSLQAIADDSRFREARLADPSVD--RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                QA     +  E  L   S+   + +++  ++ G  RH S H  G VI   PL +LV
Sbjct: 438  SQGWQA-----QIIELGLQPESLKGQQFIQLVNEIIGFPRHLSQHVGGFVISSGPLYELV 492

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA---QRGVKVDLSL 600
            P+      D  + Q++   +E   L+K D L L  L  ++K    +    QR + +    
Sbjct: 493  PVENAAMEDRTIIQWDKDDLESLELLKVDVLALGMLNAIRKCFQLIEKHHQRSLSIAEIT 552

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
               DD   Y +L    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI  D +
Sbjct: 553  RRQDDPHVYRMLQKADTVGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGPIQGDMV 612

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  R+NG+E +      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM 
Sbjct: 613  HPFLKRRNGEEPVSYPSEAVKSVLERTMGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMA 672

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K   ++ K K + ++G  + G     A  IFE +  F +YGF +SH+A++AV++Y +A
Sbjct: 673  SWKKNGDLAKFKPKLLNGMQERGYDLAFAERIFEQICGFGEYGFPESHSASFAVLAYCSA 732

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GD 832
            W+K +YP EF  A +  +        +  QDAR+  ++++P  VN       +     G 
Sbjct: 733  WLKYYYPAEFYTALLNSQPMGFYSPSQLVQDARRHGVEVLPICVNHSYYQHHLIQRPNGR 792

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              +      +KG     A  ++E      + S+++    V     +RR +E L  A A  
Sbjct: 793  LGVQLGFRLVKGFNEEGATRLVERRPKTGYHSIQE----VKQILRSRRDIELLASANAFQ 848

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                +R             A+W   +  +    +F H      ++ ++      +     
Sbjct: 849  ILSGNRY-----------NARWAAMDSLSD-LPLFHH-----IEEPSVGYQVQPSEYESL 891

Query: 953  ENEQRVLGFYFSGHPLDVYKP--ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
              +    G   + HP+ + +   IL +      ++ V     + + +A +V  +Q   T 
Sbjct: 892  IEDYASTGLSLNRHPITLLEEAGILPRF--TRMKQLVDKEHKSLVTVAGVVTGRQSPGTA 949

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G  + + T  +         +
Sbjct: 950  AG--VTFFTLEDDTGNINVVVW 969


>gi|323491954|ref|ZP_08097123.1| error-prone DNA polymerase [Vibrio brasiliensis LMG 20546]
 gi|323313812|gb|EGA66907.1| error-prone DNA polymerase [Vibrio brasiliensis LMG 20546]
          Length = 1023

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/1037 (25%), Positives = 446/1037 (43%), Gaps = 84/1037 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  L   S++S L GA     ++ +    +  ++AITD  ++   +     +    +  
Sbjct: 2    AYAELFCQSNFSFLSGASHAEELILQADFLRYHSLAITDECSVAGVVRAYSASQQHDLNI 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
             +       + D                 +VLL    E Y  L  +++      + K S 
Sbjct: 62   ELIIGSMFWLNDE--------------CQVVLLCPDREAYAELCRIITNSRRRSE-KGSY 106

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            ++   W        LI+    +     +                  +    RL++ +QRH
Sbjct: 107  QLS-EWDLMSAKRCLILWLPCNKPSDSKWGH------------WLTQHHRHRLWIAVQRH 153

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                D+       QLA  ++LP+ A    L  +         L A+ H   V+Q    R+
Sbjct: 154  LSSDDKQYLEHCQQLATNNQLPITACGGVLMHTATRLPLQHTLTAIKHGCSVNQLGEQRL 213

Query: 249  T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            T  +  L+++ ++  +F    E L+ +V IA+RC+F L+      P  +  +        
Sbjct: 214  TNTERTLRSQEKLAKLFK--SEWLQESVAIAKRCTFSLEELKYEYPSELVPDG----HTP 267

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + L      G ++R  +G         D    +D EL +I  + +  YFL + D + +A
Sbjct: 268  MSYLIALVEYGKKLRFPEGV------PSDIAATIDKELALIDELNYPFYFLTIHDIVMFA 321

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +RR
Sbjct: 322  KRNRILY-QGRGSAANSVVCYCLEITSVDPRQISVLFERFISRERDEPPDIDVDFEHERR 380

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  SQ+D   K I N      
Sbjct: 381  EEVIQYIYQKYGRERAALAATVISYRFKSAVRDVGKALGIEESQLDYFIKNI-NRRDRAQ 439

Query: 488  SLQAIADDSRFREARLADPSVD--RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              QA     +  E  L   S+   + + +   + G  RH S H  G +I   PL +LVP+
Sbjct: 440  GWQA-----QIVELGLQPDSLKGEQFITLVNDILGFPRHLSQHVGGFIIAAGPLYELVPV 494

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA---QRGVKVDLSLIP 602
                  D  V Q++   +E   L+K D L L  LT ++K  D +    QR + +      
Sbjct: 495  ENASMDDRTVIQWDKDDLESLKLLKVDVLALGMLTAIRKCFDLIERIHQRTLSIAEITRR 554

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             DD   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI  D +  
Sbjct: 555  QDDSNVYRMIQKADTVGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGPIQGDMVHP 614

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+NG+E +      +  +L+ T GV I+QEQV++IA + +G+S  EAD LRRAM   
Sbjct: 615  YLKRRNGEETVEYPSQEVRSVLERTLGVPIFQEQVIKIAMVAAGFSGGEADKLRRAMAAW 674

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K   ++ K K + I G    G     A  IF  +  F +YGF +SH+A++AV++Y +AW+
Sbjct: 675  KKNGDLVKFKTKLIEGMQARGYQLEFAERIFAQILGFGEYGFPESHSASFAVLAYCSAWL 734

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRI 835
            K +YP  F  + +           +  QDAR+  + I+P  VN    D +V    G   I
Sbjct: 735  KHYYPEAFYTSLLNSLPMGFYSASQLVQDARRHGVDILPICVNASLYDHQVVVDNGKLAI 794

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  IKG    +AR ++ A A   F    +  +++    LN+R +E L  A A+    
Sbjct: 795  RLGLRQIKGFSAHSARQLIHARAKTGF----NHSTQLKHIGLNQRDVELLASANAMHSLS 850

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R Q   ++                  +++        +++  +      + +     +
Sbjct: 851  NNRYQTRWAM-----------------MDSLSDLPLFQQAEESDIPVVGTPSETQTLVED 893

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G   + HP+ +              +       + + +  +V  KQ   T  G  +
Sbjct: 894  YAATGLSLAKHPITLLDEAGVLGRFTRMRDLATKPHQSLVTVTGVVTGKQSPGTAAG--V 951

Query: 1016 GWVTFSEPAKEYEANFF 1032
             + T  +         +
Sbjct: 952  TFFTLEDDTGNINVVVW 968


>gi|127513028|ref|YP_001094225.1| DNA polymerase III, alpha subunit [Shewanella loihica PV-4]
 gi|126638323|gb|ABO23966.1| DNA polymerase III, alpha subunit [Shewanella loihica PV-4]
          Length = 1078

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/1063 (24%), Positives = 453/1063 (42%), Gaps = 87/1063 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L V S+YS L GA   + ++++       A+A+TD  +    ++  + A    ++ I
Sbjct: 7    YAELHVLSNYSFLRGASHPHELVEQAKRLGYQALALTDECSFAGVVKAHEAAKRCDLKLI 66

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG---YQ-------------RLIE 114
            +G +  +D +    +    +  +  + +++     ++G   Y+              L  
Sbjct: 67   LGAEFHLD-EGLFVLLAPCRFAYGEISALITNARRSQGKGEYRVSLEAILAQQQSLLLWR 125

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLL 172
              S       G+           +     L +     S          S+  +++   L 
Sbjct: 126  PPSLAQFRQAGEAR---RDEARSDDARSDLAVNDTAESEMAGGDTAKGSAAQSDEPNLLS 182

Query: 173  TFKKL-----------FGDRLYVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFL 220
             ++             F DRL++ ++R          Q  Q L+ T ++P VA       
Sbjct: 183  RYRDHIASIASRLVVAFPDRLHLLMERLLLPGEALNLQQWQWLSQTQKVPCVAAGGVRMH 242

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
              E     D+L  +AH   +        +  +  LK  +     +    E ++N + +AR
Sbjct: 243  EAERQPLLDILTCIAHGRDLDSGVALCSINAEASLKPIAAQRKRYPQ--EWIDNGLALAR 300

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
            RC F L       P  +         +  + L      G   R   G   +       + 
Sbjct: 301  RCHFSLDELKYEYPAEVVPAGM----QASDYLAQAVREGARRRFPDGVPDR------VKA 350

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            + + EL +IA M +  +FL + D + +AK   I    GRGS A SV  Y L IT++DP +
Sbjct: 351  QYEKELELIAAMAYEYFFLTIYDIVCFAKSQQILY-QGRGSAANSVVCYCLGITEVDPTK 409

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
             ++LFERF++ +R   PD D+DF  +RR+EVI+Y+  KYG +R A        + K+A+ 
Sbjct: 410  INMLFERFISKERNEPPDIDVDFEHERREEVIQYIYRKYGRDRTALAAAVICYRFKSAMG 469

Query: 460  DVGRALQMPYSQVDRLCKLIPN-DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
            DVG+AL +   QV  + K I   DP H  + Q  A        R+  P V  L+      
Sbjct: 470  DVGKALGIDAEQVALMIKNIDRRDPKHHWTTQLAAMLPEAGRGRMLLPLVQTLI------ 523

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
             G  RH S H  G +I   PLS+LVP+     +D  V Q++   +E  GL+K D L L  
Sbjct: 524  -GFPRHLSQHVGGFIISAGPLSELVPIENAAMADRTVIQWDKDDLESLGLLKVDILALGM 582

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            LT ++K+   L+       ++ + +++ E Y +L    ++G+FQ+ES      L  ++P 
Sbjct: 583  LTAIRKTFTLLSLPEKAFSMADVAWEEAEVYRMLQAGDSIGVFQVESRAQSAMLPRLKPA 642

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            C  D++  +++ RPGPI  D +  Y  R++G E +    P ++ +L  T GV I+QEQV+
Sbjct: 643  CYYDLVVQIAIVRPGPIQGDMVHPYLRRRDGLEAVEYPSPAVESVLSRTMGVPIFQEQVI 702

Query: 697  QIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            Q+A + +G+S  EAD LRRAM   K   E++K + + + G +  G S+T A  I+  +  
Sbjct: 703  QLAMVAAGFSGGEADQLRRAMASWKRTGELEKFEAKLLQGMAARGYSQTFAEQIYRQIKG 762

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            F +YGF +SH+A++A+++Y +A++K HYP  F  A +  +        +  QD ++ ++ 
Sbjct: 763  FGEYGFPESHSASFALLAYVSAYLKHHYPAAFCCALLNSQPMGFYSPSQLIQDVQRHDVM 822

Query: 816  IMPPSVNTPCVDF------KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
            ++P  VN    D       +     I      +KG+     + ++ A  +  F  +E   
Sbjct: 823  VLPVCVNHSDWDNSLVPLLEAEQPAIRLGFRQVKGLRLEEIKTLIAARPEGGFTRVEQLY 882

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
                   L++  L  L  A AL      R Q    L            +       +F  
Sbjct: 883  EL----GLSQGCLTLLASADALLTLAGHRYQARWQL------------SAYQPSLPLFDD 926

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
                 S+ +        +     +++ R LG     H +   + +   +G +   E    
Sbjct: 927  LPAVASEVVLAPP----SEMAAMQSDYRHLGLSLGRHVMAQLRGLAPFVGCRHASELADC 982

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              G  + +A +VV +Q+  T  G  + +VT  +         +
Sbjct: 983  RHGQLVHVAGVVVGRQRPGTASG--VTFVTLEDETGNINVIVW 1023


>gi|217977255|ref|YP_002361402.1| DNA polymerase III, alpha subunit [Methylocella silvestris BL2]
 gi|217502631|gb|ACK50040.1| DNA polymerase III, alpha subunit [Methylocella silvestris BL2]
          Length = 1145

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/1078 (22%), Positives = 447/1078 (41%), Gaps = 94/1078 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SP +  L   +++S L GA     ++    A     + I D N+L   +   +      +
Sbjct: 2    SPRYAELAATTNFSFLRGASHPEELVAAAMALGLAGLGIADRNSLAGVVRAHRF-----L 56

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +        + +   L             P I+        Y RL  L++R     Q   
Sbjct: 57   KANKSPSFHLAIGARLVFC-------DGAPDILSYPRDRAAYGRLTRLLTRANARAQKGV 109

Query: 128  SVRICLSWLQEIGTEGLIML--TGGSSGPIDRAFFFNSSQVAEK---------------- 169
            S+      ++    + LI++  T    G   R      +++ +                 
Sbjct: 110  SLLRSSDLIEAAQGQQLILMPETTWEKGDETRRSRKIHAELHDNNHYKNPVDLLDDAHAL 169

Query: 170  -------RLLTFKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLS 221
                    +   ++    RL++     +    R   +  + L+     PL+A N+ +  +
Sbjct: 170  AFGQEMPLIEQLREASNGRLWLAAKMTYGVSMRRDLASRIALSRKTNTPLIAVNDVIMHT 229

Query: 222  EEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
             E     DVL A+     + +         + ++K+ +EM  +F+  P+A+E T+     
Sbjct: 230  PERRPLQDVLSAIRAGQTLDRLGLALEANAERHMKSAAEMARLFAGAPQAMEETLRFLDG 289

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
              F L       P    +E  +  +  +  L   A  G + R   G              
Sbjct: 290  LDFSLDELRGDYP----EELREGFETPQAALAFFAREGAKFRFPDGV------PPSVETA 339

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            +  EL ++ ++ ++ YFL V D +++A+   I +  GRGS A S   Y L +T+++P   
Sbjct: 340  IAHELKLVEQLDYAPYFLTVHDIVRFARTEKI-LCQGRGSAANSTLCYCLGVTEVNPAFH 398

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            +LLFERF++PDR   PD D+DF  +RR++V++Y+  +YG  R A   +  + +A++A+R+
Sbjct: 399  NLLFERFISPDRNEPPDIDVDFEHERREQVMQYIYARYGRARAALTASVITYRARSAIRE 458

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            VG+A  +    V  L   I    +  V     A +++       +  + + L+++++L G
Sbjct: 459  VGKAFGLSDDVVSALSATIWGGSSSSVE----AGEAQKAGFDPTEARLAQTLKLAEELIG 514

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              RH S H  G VI    L ++VP+      D    +++   ++  G++K D L L  LT
Sbjct: 515  FPRHLSQHTGGFVITRSRLDEVVPIMNAAMEDRTTIEWDKDDLDALGILKIDVLALGMLT 574

Query: 581  LLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
             L+K  D + +    ++ ++ +P +    Y +++   T+G+FQ+ES      L  ++P  
Sbjct: 575  CLRKGFDLIREHYGEELTIATLPPEQGAVYEMISRADTIGVFQIESRAQMSMLPRLRPRE 634

Query: 640  IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
              D++  V++ RPGPI  D +  Y  R+ G E +      ++ +L +T GV ++QEQ M+
Sbjct: 635  FYDLVIEVAIVRPGPIQGDMVHPYLRRRQGLEPVSYPSKQLEEVLGKTLGVPLFQEQAMK 694

Query: 698  IAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            IA + +G++ SEAD LRRAM   K    +   + + I G      S+  A   F+ +  F
Sbjct: 695  IAIVAAGFTPSEADQLRRAMATFKHVGTIGAFRAKMIEGMVARDYSRDFAERCFKQIEGF 754

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
              YGF +SHAA++A++ Y +AWMK  YP  F  A +  +        +  +DAR+  + +
Sbjct: 755  GSYGFPESHAASFALLVYASAWMKCRYPDAFACALLNAQPMGFYAPAQILRDAREHGVGV 814

Query: 817  MPPSVNTPCVDFKVGDNRIY---------------------YSLAAIKGVGTTTARHIME 855
                VN    D  +                                IKG     A  ++ 
Sbjct: 815  EEVDVNFSHWDSTLTPAAERRPPHPRHASMQGEIFATCGISLGFRQIKGFAEHDATQLVA 874

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
               D+ +DS+ D   R     L+  V+E L  A A    G  R + L ++  +       
Sbjct: 875  MR-DRGYDSIRDLWLRA---GLSLAVMELLAGADAFRSLGLDRREALWAVRGL------- 923

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
              NR    +++   +  ++       K            + R L      HP+   +  L
Sbjct: 924  --NRAGDKDDLPLLKDLSWRATEAEAKLPPMLLGEHVVEDYRRLSLSLKAHPVSFLRERL 981

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +  I   ++      G+ I +A +V+ +Q+  T  G  + ++T  +      A  +P
Sbjct: 982  TQKRILRADDLKNQPAGSRITVAGLVLVRQRPGTASG--VIFLTIEDETGIANAIVWP 1037


>gi|304310903|ref|YP_003810501.1| Error-prone DNA polymerase [gamma proteobacterium HdN1]
 gi|301796636|emb|CBL44848.1| Error-prone DNA polymerase [gamma proteobacterium HdN1]
          Length = 1075

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/1036 (26%), Positives = 455/1036 (43%), Gaps = 81/1036 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S L+GA     ++ +  A    AIA+TD  +L   +    +A   GI+ I
Sbjct: 52   YAELFCLSNFSFLKGASHPEELVRQAHAQSYSAIALTDECSLAGVVRALVEAEKCGIKLI 111

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG     +                     V L  +   Y +L   +S      +  Q   
Sbjct: 112  IGSYFVCEEG----------------LRYVALAPSKLAYHQLSSYISHARRRSKKGQYEA 155

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRH 189
                  + +    LI L        DRA+     +  +     F ++  +RL++ + Q  
Sbjct: 156  HTKDLERHLRDCLLIWLP-------DRAYV----ESTQADTQYFLQISRERLWIGIEQGF 204

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRV 248
                  + +  + LA +  LP+VA    L  S       DVL A+  +T V Q     + 
Sbjct: 205  CAITPEQFTWRMSLANSLHLPIVAVGGVLTHSASRQPVQDVLTAIRLNTTVDQAGFELQS 264

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + +L+   E+ + F     AL+NTVEIA RC F L+      P               
Sbjct: 265  NRERHLQRLEELQNRFP--KAALQNTVEIANRCLFSLRELRYEYPHESVPSN----VSPT 318

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR    +G   R  +G + K       R +L+ EL++IA + +  YFL V D +Q+A+
Sbjct: 319  QYLRAITYSGARQRWPEGILEK------VRAQLEKELHIIAELHYEYYFLTVYDIVQFAR 372

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I +  GRGS A S   + L IT++DP    LLFERF++ +R   PD D+DF  +RR+
Sbjct: 373  SRRI-LCQGRGSAANSAVCFCLFITEVDPAIHHLLFERFISKERNEPPDIDVDFEHERRE 431

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI-PNDPAHPV 487
            E+I+++  KYG +R A   +  + + K+ALRDV +AL    + +D L +L+   D    +
Sbjct: 432  EIIQFIYQKYGRQRAALTASVITWRLKSALRDVAKALGFDGTLIDPLNRLLTWWDQPDQL 491

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            + Q +     + + R     V +L+ +   L    RH S H  G +I D  L QLVP+  
Sbjct: 492  AEQLMTIGLDYNQRR-----VRQLIYLVNILLRFPRHLSQHTGGFIISDGHLDQLVPIEN 546

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  V Q++   IE  GL+K D L L  L+ +++  D LA  RG    ++ +P +D 
Sbjct: 547  ASMPDRTVVQWDKDDIETLGLMKIDILALGMLSAIRRCFDLLAPIRGRHWSMATLPAEDP 606

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664
            E Y +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGP+    +  +  R
Sbjct: 607  EVYQMLQQADSIGVFQVESRAQMSMLPRLKPACFYDLVIQVAIVRPGPMQGNMVHPFLKR 666

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKE 723
            + G E +      ++ +LK T GV I+QEQV+++A L +G+S  EAD LRRAM   K K 
Sbjct: 667  RQGLESVEYPGKEVESVLKRTLGVPIFQEQVIELAMLAAGFSAGEADQLRRAMASWKKKG 726

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            E+ + +E+   G    G     A  I E +  F +YGF +SHAA++A++ Y +AW+K H 
Sbjct: 727  ELQRHQEKLHHGLMARGYITEFAERIIEQINGFGEYGFPESHAASFALLVYVSAWLKCHE 786

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIYY 837
            P  F  A +  +        +  QDAR+ N++I    V     +  +          +  
Sbjct: 787  PAAFCCALLNSQPMGFYSASQLVQDARRHNVEIRTVDVMCSQWEHSLEPLSGRQQPALRL 846

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  +K   +   + ++ A   + F S+ D   R      N++ +++L    AL     +
Sbjct: 847  GLCMLKDFSSIGGQSLLRARKQRAFQSIADLKQRAFL---NQKDMDALAHGNALLTLTGN 903

Query: 898  RMQL-LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R Q   +S+      A     N ++    + A                    +     + 
Sbjct: 904  RHQARWESMALHAPTALVDASNESDISVLLRA-----------------PTEAKDMLEDY 946

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            R LG     HP+ + +        K  +E         +++A +V  +Q+  T KG  + 
Sbjct: 947  RSLGLTLGRHPMALLRNHAALKVCKLQKEVCLLSTRRFVQVAGIVTCRQRPGTAKG--VM 1004

Query: 1017 WVTFSEPAKEYEANFF 1032
            ++T  +    +    +
Sbjct: 1005 FLTLEDETGNHNIVIW 1020


>gi|260776316|ref|ZP_05885211.1| DNA polymerase III alpha subunit [Vibrio coralliilyticus ATCC
            BAA-450]
 gi|260607539|gb|EEX33804.1| DNA polymerase III alpha subunit [Vibrio coralliilyticus ATCC
            BAA-450]
          Length = 1023

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/1037 (24%), Positives = 446/1037 (43%), Gaps = 86/1037 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   +++S L GA     ++ +    +  A+AITD  ++   +   +      +   
Sbjct: 3    YAELFCQTNFSFLTGASHAEELILQADFLRYHALAITDECSVAGVVRAYRAIKTHNLNIK 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +       + D                 +VLL    E Y  L  +++      +  Q   
Sbjct: 63   LIIGSMFWLNDE--------------CQVVLLCPNREAYAELCRIITNARRRTEKGQY-- 106

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
                W        LI+            +  +     +K      +    RL++ +QRH 
Sbjct: 107  QLAEWDLMSLRHCLIV------------WLPSHQHSDQKWGHWLAQHHQPRLWLGVQRHL 154

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               D+   +   +LA    +P+ A    L  +        VL AV H + V +  +  +T
Sbjct: 155  DADDKSYLTHCEELAQELMVPITACGGVLMHTANRLPLQHVLTAVRHGSSVDKIGKHLLT 214

Query: 250  -PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +  L+++ ++  +F    E LE ++ +  +C F L+      P  +    +       
Sbjct: 215  NTERTLRSKEKLARLFKQ--EWLEESIRLTEQCQFSLEKLKYEYPHELVPSGE----TPM 268

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR    +G   R  +G        QD  + +D EL +I  + +  YFL + D + +AK
Sbjct: 269  SYLRKLVDSGKRRRFPEGI------PQDISETIDKELELIDELNYPYYFLTIHDIVMFAK 322

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            + NI    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +RR+
Sbjct: 323  RQNILY-QGRGSAANSVVCYCLEITAVDPRQISVLFERFISKERDEPPDIDVDFEHERRE 381

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  KYG ER A   T  + + K+A+RDVG+AL +  SQ+D   K + N     + 
Sbjct: 382  EVIQYIYQKYGRERAALAATVITYRFKSAVRDVGKALGIEESQLDYFIKNV-NRRDRELG 440

Query: 489  LQAIADDSRFREARLADPSVD--RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             QA     +  E  L   S+   + + +   + G  RH S H  G VI   PL +LVP+ 
Sbjct: 441  WQA-----QIVELGLQPDSLKGEQFITLVNDILGFPRHLSQHVGGFVIAAGPLYELVPVE 495

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS----LIP 602
                +   V Q++   +E   L+K D L L  L+ + K    +  R  + DL+       
Sbjct: 496  NASMAGRTVIQWDKDDLESLKLMKVDVLALGMLSAIHKCFQLVK-RFHQQDLTIAEITRR 554

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             DD E Y ++    T+G+FQ+ES      L  ++P    D++  +++ RPGPI  D +  
Sbjct: 555  QDDPEVYGMIQKADTVGVFQIESRAQMSMLPRLRPKTYYDLVIQIAIVRPGPIQGDMVHP 614

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            +  R++G E +      +  +L  T GV I+QEQV+++A + +G+S  EAD LRRAM   
Sbjct: 615  FLKRRDGIEPVTFPSDEVKDVLSRTMGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMASW 674

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K   ++ K + + I G    G  +  A  IF+ +  F +YGF +SH+A++AV++Y +AW+
Sbjct: 675  KKNGDLVKFRTKLIEGMLARGYEQEFAERIFDQILGFGEYGFPESHSASFAVLAYCSAWL 734

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----RI 835
            K ++P  F A+ +           +  QDAR+ ++ I+P  VN    D +V        I
Sbjct: 735  KHYHPEAFYASLLNSLPMGFYSASQLVQDARRHHVLILPVCVNQSHYDHQVVRCGNKLAI 794

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                  IKG    ++  +++A   + F        ++    LN+R LE L  A A+    
Sbjct: 795  RLGFRQIKGFSAESSLQLLKARGSEGFQ----HPRQLKHIGLNQRDLELLASANAMQSIA 850

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R Q   ++ +                  +F   +   SD I+       +       +
Sbjct: 851  NNRFQTRWAMMDSLSD------------LPLFKDLEEPQSDSISKP-----SEVQTLLED 893

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
               +G   S HP+ + +           +E +     + + +  +V  KQ   T  G  +
Sbjct: 894  YSSIGLSLSKHPITLLEQAGVLGRFTRMKELIHKPHQSLVTIVGVVTGKQAPGTAAG--V 951

Query: 1016 GWVTFSEPAKEYEANFF 1032
             + T  + +       +
Sbjct: 952  TFFTLEDDSGNMNVVVW 968


>gi|327459938|gb|EGF06278.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK1057]
          Length = 1069

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/1025 (28%), Positives = 493/1025 (48%), Gaps = 102/1025 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36   IQLDTKTVYSFMDSLVPIKKYVQKAKDLGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G         +L +    K        + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 96   GL--------DLSLIKAEKE-----LHLRLLALDSQGYRNLMK-VSTLKMMGQ------- 134

Query: 132  CLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              +W       +GL ++     G  D                    L  D  Y+ +    
Sbjct: 135  -KNWEDFQHLFKGLALIVPAFDGVADL------------------DLGMD-FYIGVFPAT 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                               P +  +   +    D E   +L A+  +  + +     +  
Sbjct: 175  PR------------QEFGRPTLPLHTVRYFDTGDLETLQMLRAIRENASLREIG--SLPN 220

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              +L     +   F +  PE+L N  ++ R   + +      LPRF      + ++    
Sbjct: 221  HEFLLTPDALAGAFKETFPESLSNLEKLVRYVHYDIN-RELKLPRF------NRERPAVE 273

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ELR ++ AGL+ R        G   + Y++RL+ EL VI +M F  YFLIV D +++ + 
Sbjct: 274  ELRERSEAGLKKR--------GLTGKLYQERLNQELAVIHQMGFDDYFLIVWDLLRFGRS 325

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E
Sbjct: 326  QGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPE 385

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +     
Sbjct: 386  FIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT--- 442

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+    
Sbjct: 443  SAYEKNMGFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL--KY 500

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D ET
Sbjct: 501  GEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIAEIDLEDAET 560

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G 
Sbjct: 561  LKLFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGL 620

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + 
Sbjct: 621  EQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMHRM 680

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 681  QEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDVFF 740

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA  F+ +  P S+N      K  D +I+  L  IKG+   
Sbjct: 741  DVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLPRD 794

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+
Sbjct: 795  LAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNL 854

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +A        ++  ++FA    ++++          + + +FE EQ ++G   S HPL
Sbjct: 855  FVFA--------DELGSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSDHPL 900

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                  L K   + +         +  R+ A V + +  +T+KG  + ++  S+  K+ +
Sbjct: 901  ----VKLAKEADQPFSWISELTENSRARILAEVQTIKTIRTKKGENMAFLQVSDTKKKLD 956

Query: 1029 ANFFP 1033
               FP
Sbjct: 957  VTLFP 961


>gi|27366263|ref|NP_761791.1| DNA polymerase III subunit alpha [Vibrio vulnificus CMCP6]
 gi|71151842|sp|Q8D8I6|DNAE2_VIBVU RecName: Full=Error-prone DNA polymerase
 gi|27362464|gb|AAO11318.1| DNA polymerase III alpha subunit [Vibrio vulnificus CMCP6]
          Length = 1024

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/1037 (24%), Positives = 434/1037 (41%), Gaps = 85/1037 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S L GA     ++ +       ++AITD  +L   +          +   
Sbjct: 3    YAELFCQSNFSFLTGASHPEELIVQANFLGYHSLAITDECSLAGIVRAHSAIKQHQLSVK 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
                    +               T    VLL    E Y  L  +++      + K   +
Sbjct: 63   QIVGSFFKLN--------------TECQFVLLCPNREAYAELCRIITNARRRCE-KGQYQ 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +    +  +    LI L  G +               E+      +    RL++ LQRH 
Sbjct: 108  LSQWDVMSLKHCLLIWLPTGQTSD-------------EQWATWLSRYQQSRLWLGLQRHL 154

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRV 248
            R  D +       LA   +LP+ A    L    E       L A+ H   V Q   +   
Sbjct: 155  RHDDEHYLHHCQTLANQFDLPITACGGVLMHRPERLPLQHTLTAIRHGCTVEQLGTQLLT 214

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +  L++  ++  +F   P+ L  ++ IA  CSF L       P  +  +        +
Sbjct: 215  NAEQSLRSEKKLRKLFK--PQWLAESLYIASLCSFDLDSLRYEYPSELIPDG----YTPD 268

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L +    G ++R  +G            Q +  EL +I   K+  +FL + D + +AK
Sbjct: 269  SYLEHLVEQGKKLRFPEGV------PDAIEQTIQKELALIKEQKYPFFFLTIHDIVMFAK 322

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I    GRGS A SV  Y L IT +DP + ++LFERF++ +R   PD D+DF  +RR+
Sbjct: 323  QQGILY-QGRGSAANSVVCYCLQITSVDPRQIAVLFERFISKERDEPPDIDVDFEHERRE 381

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  KYG +R A   T  S + K+A+R VG+AL +  +Q+D   K I N       
Sbjct: 382  EVIQYIYQKYGRQRAALAATVISYRFKSAVRQVGKALGIEETQLDFFLKNI-NRRDRQAG 440

Query: 489  LQAIADDSRFREARLADPSVD--RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             QA     +  E  L   S+     +++ +++ G  RH S H  G VI   PL +LVP+ 
Sbjct: 441  WQA-----QLVELGLQPDSLKGQHFIQLVEEIIGFPRHLSQHVGGFVISSGPLYELVPVE 495

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV---DLSLIPF 603
                 +  + Q++   +E   L+K D L L  LT ++K    + Q   +           
Sbjct: 496  NAAMPERTIIQWDKDDLESLKLLKVDVLSLGMLTAIRKCFLSIEQHHQQRLSIADITRRQ 555

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            DD   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI  D +  +
Sbjct: 556  DDQAVYKMIQKADTIGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGPIQGDMVHPF 615

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R++G+E I      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM   K
Sbjct: 616  LKRRDGEEPISYPSVHVQEVLERTLGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMAAWK 675

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                + K K + I+G  + G     A  IFE +  F +YGF +SH+A++AV++Y +AW+K
Sbjct: 676  KNGHVFKFKTKLINGMLERGYELDFAERIFEQICGFGEYGFPESHSASFAVLAYCSAWLK 735

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRI 835
             +YP EF  A +  +        +  QDA++  I ++P  VN    + ++     G+  I
Sbjct: 736  HYYPAEFYTALLNSQPMGFYSPSQLVQDAKRHGIAVLPICVNFSNAEHQLVRLTSGELAI 795

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                  IKG+       ++     + +  + +    +   K  + +  +  F    D   
Sbjct: 796  RLGFNLIKGLSHEGITRLLTHRPAQGYQCISEVKQILRQAKDIQSLASANAFYQLADNRY 855

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R Q++ +LD +                 +F       ++   L K S   + +    +
Sbjct: 856  LARWQVMDNLDEL----------------PLFQTLPSISNN--PLPKPSDYQNVL---ED 894

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G   + HP+ + +            +       + + +  +V  KQ   T  G  +
Sbjct: 895  YAATGLSLAEHPVAMLEKAGGLTRFTRANQLNQCSHRSLVTVIGLVTGKQSPGTAAG--V 952

Query: 1016 GWVTFSEPAKEYEANFF 1032
             + T  +         +
Sbjct: 953  TFFTLEDDTGNINVVVW 969


>gi|332187677|ref|ZP_08389412.1| DNA polymerase III, alpha subunit [Sphingomonas sp. S17]
 gi|332012243|gb|EGI54313.1| DNA polymerase III, alpha subunit [Sphingomonas sp. S17]
          Length = 1097

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/1053 (24%), Positives = 441/1053 (41%), Gaps = 73/1053 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F  L   + YS L+GA +   ++ +  A     I I D N +   +   +       + 
Sbjct: 3    GFAELVAATHYSFLDGASAAEAMVTQAIALGLDGIGIADRNTVAGVVRAHRALRELREKF 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
                 L   +     +   G       P IV+      G+ RL  L++R     + K   
Sbjct: 63   GKKMGLFELVVGARLVFADG------TPDIVVYPVNRAGWGRLTRLLTRGNSRAK-KGGC 115

Query: 130  RICLSWLQEIGTEGLIML----TGGSSGPIDRAFFFNSSQV--AEKRLLTFKKLFGDRLY 183
             + L  L     + L+++    T     PI  A              L     +   R++
Sbjct: 116  ILGLGDLTRHAEDLLLIVRPESTARPCEPIPDAMLPPKRADPGLAATLDRLVAVAPGRVW 175

Query: 184  VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +   R G DR R +    LA +  +PL+AT ++LF    D    D+L  +     +  
Sbjct: 176  LGVTMPREGADRRRLAAQAALAESRGVPLLATTDALFAEPADRPVQDILTCIREGLTIRS 235

Query: 243  KDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              R      + +LK  +EM  +F+D P A+  ++ I  R  F L   +   P     E  
Sbjct: 236  AGRQLAANAERHLKPAAEMARLFADRPGAVAESLAILDRIEFRLNHISYQYPDEPVPEG- 294

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                E ++ L      G   R  +G   K       R  LD EL +I   +++ YFL V 
Sbjct: 295  ---WEAQDWLEELVRQGAAERFPEGVPPK------LRATLDEELKLIRESEYAHYFLTVH 345

Query: 362  DFIQWAKKNNIPV-GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            D +++A+    P+   GRGS A S   + L +T +DP +  LLF RF++ +R   PD DI
Sbjct: 346  DVVRYARSLEPPILCQGRGSAANSAVCWILGVTSVDPTKHDLLFSRFVSAERKEPPDIDI 405

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI+Y+  +YG  R A   T    + ++ +R+VGRAL +      RL   + 
Sbjct: 406  DFEHERREEVIQYIYERYGRHRAAIAATVIHYRPRSTVREVGRALGLSEDITQRLTSTVW 465

Query: 481  NDPAHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                   S     ++ RF E   +  +P + RL  +  +L G  RH S H  G V+    
Sbjct: 466  G------SFSQRFEEKRFHETGFSPDNPEIGRLRTLVDRLLGAPRHLSQHVGGFVLTQGR 519

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
            L + VP++          +++   I++  ++K D L L  LT ++K+ D +A  G  +  
Sbjct: 520  LDETVPIHNGAMEGRTFIEWDKDDIDELRIMKVDILALGMLTCIRKAFDLMAANGLPRPK 579

Query: 598  LSLIPFD-DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI- 655
            L  +  D D   Y +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI 
Sbjct: 580  LDTLAQDEDKCVYEMLQKGDSIGVFQVESRAQINMLPRLKPARFYDLVVQVAIVRPGPIE 639

Query: 656  -DNIVVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
             D +  Y  R+  KEK+    P         +  +LK+T GV ++QEQ M++A + + ++
Sbjct: 640  GDMVHPYLRRRANKEKVEYPSPHPWEGDADELKAILKDTYGVPLFQEQAMKLAIVAAKFT 699

Query: 707  LSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
              EA+ LRRAM   +    +   +E+ + G  K G  +  A   F+ +  F  YGF +SH
Sbjct: 700  PDEANQLRRAMATFRNVGTIQNFREKMVGGMVKRGYEQDFAERCFKQIEGFGSYGFPESH 759

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPSVNTP 824
            A ++A + Y +AW+K H P  F  A +  +        +  +DAR+   +++ P  VN  
Sbjct: 760  ALSFARLVYVSAWLKCHQPAIFTCALLNAQPMGFYAPAQLVRDARENGKVEVRPVDVNYS 819

Query: 825  CVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
              D ++     G   +      + G       HI +     P++++E    R    KL R
Sbjct: 820  GWDNRLERREDGALALRLGFRQVDGFREEWGTHIAD---HAPYEAIESVAIRA---KLPR 873

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R L+ L  A A    G  R +            QW  +   +    +FA  +        
Sbjct: 874  RALDLLAQADAYRSLGRGRRE-----------GQWEARRMKSAQLPLFAAMQAPEMAAEP 922

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
                     S +   + R       GHP+   +  L   GI    +      G   ++A 
Sbjct: 923  EVDLPPMPLSEQVSADYRATRLSLKGHPMAFLRRELASEGILSAADLHNLADGRRAKVAG 982

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V+ +Q+    KG+ I ++T  +      A  +
Sbjct: 983  VVLVRQRPG--KGNAI-FITIEDETGIVNALLW 1012


>gi|328945925|gb|EGG40073.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK1087]
          Length = 1069

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/1025 (28%), Positives = 490/1025 (47%), Gaps = 102/1025 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36   IQLDTKTVYSFMDSLVPIKKYVQKAKDLGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G              +           + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 96   GL-------------DLSLIKADQELHLRLLALDSQGYRNLMK-VSTLKMMGQ------- 134

Query: 132  CLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              +W       +GL ++     G  D                    L  D  Y+ +    
Sbjct: 135  -KNWEDFQHLFKGLALIVPAFDGVADL------------------DLGMD-FYIGVFPAT 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                               P +  +   +    D E   +L A+  +  + +     +  
Sbjct: 175  PK------------QEFGRPTLPLHTVRYFDTGDLETLQMLRAIRENASLREIG--SLPN 220

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              +L     +   F +  PE+L N  ++ R   + +      LPRF      + ++    
Sbjct: 221  HEFLLTPDALAGAFKETFPESLANLEKLVRYVHYDIN-RELKLPRF------NRERPAVE 273

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ELR ++ AGL+ R        G   + Y++RL+ EL VI +M F  YFLIV D +++ + 
Sbjct: 274  ELRERSEAGLKKR--------GLTGKLYQERLNQELAVIHQMGFDDYFLIVWDLLRFGRS 325

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E
Sbjct: 326  QGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPE 385

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +     
Sbjct: 386  FIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT--- 442

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+    
Sbjct: 443  SAYEKNMGFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL--KY 500

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D ET
Sbjct: 501  GEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIADIDLEDAET 560

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G 
Sbjct: 561  LKLFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGL 620

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + 
Sbjct: 621  EQVELIDESLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAAEMHRM 680

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 681  QEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAFFKAHYPDVFF 740

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA  F+ +  P S+N      K  D +I+  L  IKG+   
Sbjct: 741  DVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLPKD 794

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+
Sbjct: 795  LAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILVNLPNL 854

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +A        ++  ++FA    ++++          + + +FE EQ ++G   S HPL
Sbjct: 855  FVFA--------DELGSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSDHPL 900

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                  L K   + +         +  R+ A V + +  +T+KG  + ++  S+  K+ +
Sbjct: 901  ----VKLAKEADQPFSWISELTENSRARILAEVQTIKTIRTKKGENMAFLQVSDTKKKLD 956

Query: 1029 ANFFP 1033
               FP
Sbjct: 957  VTLFP 961


>gi|327461490|gb|EGF07821.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK1]
          Length = 1042

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1025 (29%), Positives = 495/1025 (48%), Gaps = 102/1025 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 9    IQLDTKTVYSFMDSLIPIKKYVQKAKELGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 68

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +L +  ++                 + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 69   GLELSLIKEER-------------ELHLRLLALDSQGYRNLMK-VSTLKMMGQ------- 107

Query: 132  CLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              +W       +GL ++     G            VA+  L                   
Sbjct: 108  -KNWEDFQHLFKGLAVIVPAFDG------------VADLDL------------------- 135

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D Y              P +  +   +    D E   +L A+  +  + +     +  
Sbjct: 136  GLDFYVGVFPATPKQEFGWPTLPLHTVRYFDTGDLETLQMLRAIRENASLREIG--SLPN 193

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              +L     +   F +  PE+L N  ++ R   + +      LPRF      + ++    
Sbjct: 194  HEFLLAPDALAGAFKETFPESLANLEKLVRHVHYDIN-RELKLPRF------NRERPAVE 246

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ELR ++ AGL+ R        G   + Y++RLD EL+VI +M F  YFLIV D +++ + 
Sbjct: 247  ELRERSEAGLKKR--------GLTGKLYQERLDQELDVIHQMGFDDYFLIVWDLLRFGRS 298

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E
Sbjct: 299  QGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPE 358

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +     
Sbjct: 359  FIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLTT-- 416

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+    
Sbjct: 417  -AYEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL--KY 473

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D ET
Sbjct: 474  GEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIAEIDLEDAET 533

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E  G    L  +QP C E+++A  SL RPG  D I  +  RK+G 
Sbjct: 534  LKLFAAGQTKGIFQFEQPGAISLLNRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGL 593

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + 
Sbjct: 594  EQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAAEMHRM 653

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 654  QEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAFFKAHYPDVFF 713

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA  F+ +  P S+N      K  D +I+  L  IKG+   
Sbjct: 714  DVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLPRD 767

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+
Sbjct: 768  LAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNL 827

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +A        ++  ++FA    ++++          + + +FE EQ ++G   S HPL
Sbjct: 828  FVFA--------DELGSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSDHPL 873

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                  L K   + +         +  ++ A V + +  +T+KG  + ++  S+  K+ +
Sbjct: 874  ----VKLAKEADQPFSWISELTENSRAKILAQVQTIKTIRTKKGENMAFLQVSDTKKKLD 929

Query: 1029 ANFFP 1033
               FP
Sbjct: 930  VTLFP 934


>gi|310814948|ref|YP_003962912.1| error-prone DNA polymerase [Ketogulonicigenium vulgare Y25]
 gi|308753683|gb|ADO41612.1| error-prone DNA polymerase [Ketogulonicigenium vulgare Y25]
          Length = 1060

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/1046 (24%), Positives = 447/1046 (42%), Gaps = 74/1046 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P++  L + ++++ L GA      + +      PAIA+TD N+L              +
Sbjct: 2    TPAYAELCITTNFTFLRGAAHPEEFVLRATELALPAIAVTDWNSLAGVARAWTALR--NL 59

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +              L +  +       +  +VL V     Y RL +L++R  L  + K 
Sbjct: 60   REDKDMAHLHAQLPKLLIGTRLILQDSAIEWLVLPV-DIAAYHRLSQLLTRGKLRAK-KG 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-VNL 186
               +    L +     LI L     G             A  ++   ++ F   +Y    
Sbjct: 118  ECLLSQEDLLDAQDMILIALPPADLG------------TAYAQISAMQRRFPGFVYTGAA 165

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
             R+ G D+        LA     P+VA  + L          DVL  +     +     R
Sbjct: 166  PRYDGTDQAWFDLCADLALRASAPMVAVGDVLMHRASRRPVADVLTCLREGITIDNIGTR 225

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 +  LK   +M  +F + P AL  TV+IA R SF L       P     E +D  +
Sbjct: 226  ALPNAERRLKGVGDMARLFRNHPAALRRTVQIADRISFDLGDLRYDYP----DEAND-GE 280

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L   A AGL  R      +KG     Y+  LD EL+V+A + ++ YFL V D + 
Sbjct: 281  LPQARLERLARAGLIRR------SKGAAPDRYQGLLDKELSVVAELGYAPYFLTVHDIVA 334

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I +  GRGS A S+  +AL ITD++P    ++FERF++  R   PD D+DF  +
Sbjct: 335  YARSQDI-LCQGRGSAANSIICWALGITDVEPSMIGMVFERFISRHRREPPDIDVDFEHE 393

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+++ ++Y  +R     T    + +AA+R+VG+ + +       L   I      
Sbjct: 394  RREEVIQWIYDRYTRDRAGLCATVIHFRTRAAIREVGKVMGLRADVTAALAGQIWG---- 449

Query: 486  PVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGI--------VIG 535
              +  A  D +  RE  L   D  + + + + +++ G  RH S H  G         VI 
Sbjct: 450  --TSNAGTDGALMREVGLNPDDRRLSQTIALIREIIGFPRHLSQHVGGFFIQHVGGFVIT 507

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV- 594
               L  L P+      D    +++   I+  G++K D L L  LT ++K+ + L ++G  
Sbjct: 508  RGRLDALCPISNAAMDDRTCIEWDKDDIDALGILKVDVLSLGMLTCIRKAFEMLKKQGAG 567

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               L  +P +D  TY +L     +G+FQ+ES      L  M+P+   D++  V++ RPGP
Sbjct: 568  SYTLDSVPQEDAATYQMLQRADAIGVFQVESRAQMNFLPRMKPEQFYDLVIEVAIVRPGP 627

Query: 655  IDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            I   +   Y  R+   E+     P ++ + ++T GV ++QEQ +QIAQ+ +GYS  +AD 
Sbjct: 628  IQGGMVKPYIRRRQKLEEPEPFGPALEAITRKTLGVPLFQEQALQIAQVGAGYSAEDADK 687

Query: 713  LRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRR++   +    + + +E F+ G   NG ++ +A   F  +  FADYGF +SHAAA+A+
Sbjct: 688  LRRSLASFRRMGTIGQHREIFVQGMIGNGYAREVAERCFGQIEGFADYGFPESHAAAFAM 747

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            ++Y ++W+K H+P  F  A +  +        +  +DAR+ N+++ P  VN    +  + 
Sbjct: 748  LTYVSSWLKCHHPAIFACALLNSQPMGFYAPAQIVRDAREHNVEVRPICVNHSEWENTLE 807

Query: 831  ----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                G   +      IKG     A  I  A  +  +  +E    R   +     VLE L 
Sbjct: 808  KRTDGALALRLGFRQIKGFREEDADWIARARGNG-YADVESLWLRAGIR---PAVLERLA 863

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             A A    G +R   L  +  I+  A             +FA        +         
Sbjct: 864  EADAFASLGMTRRDALWDVRAIRAPA----------PLPLFADPLDGEGLREPAVHLPNM 913

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +       +          HP+++ +P L   G+  +   +       I +  +V+++Q+
Sbjct: 914  HLGEEVVEDYIATRLSLRAHPMELLRPKLP--GLTPHATLLQVPL-RRITVCGLVITRQR 970

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T  G  + ++T  +         +
Sbjct: 971  PGTASG--VVFLTLEDETGVSNIVVW 994


>gi|320156772|ref|YP_004189151.1| DNA polymerase III subunit alpha [Vibrio vulnificus MO6-24/O]
 gi|319932084|gb|ADV86948.1| DNA polymerase III alpha subunit [Vibrio vulnificus MO6-24/O]
          Length = 1024

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/1037 (24%), Positives = 433/1037 (41%), Gaps = 85/1037 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S L GA     ++ +       ++AITD  +L   +          +   
Sbjct: 3    YAELFCQSNFSFLTGASHPEELIVQANFLGYHSLAITDECSLAGIVRAHSAIKQHQLSVK 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
                    +               T    VLL    E Y  L  +++      + K   +
Sbjct: 63   QIVGSFFKLN--------------TECQFVLLCPNREAYAELCRIITNARRRCE-KGQYQ 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +    +  +    LI L  G +               E+      +    RL++ LQRH 
Sbjct: 108  LSQWDVMSLKHCLLIWLPTGQTSD-------------EQWATWLSRYQQSRLWLGLQRHL 154

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRV 248
               D +       LA   +LP+ A    L    E       L A+ H   V Q   +   
Sbjct: 155  HHDDEHYLHHCQTLANKFDLPITACGGVLMHRPERLPLQHTLTAIRHGCTVEQLGTQLLT 214

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +  L++  ++  +F   P+ L  ++ IA  CSF L       P  +  +        +
Sbjct: 215  NAEQSLRSEKKLRKLFK--PQWLAESLYIASLCSFDLDSLRYEYPSELIPDG----YTPD 268

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L +    G ++R  +G            Q +  EL +I   K+  +FL + D + +AK
Sbjct: 269  SYLEHLVEQGKKLRFPEGV------PDAIEQTIQKELALIKEQKYPFFFLTIHDIVMFAK 322

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I    GRGS A SV  Y L IT +DP + ++LFERF++ +R   PD D+DF  +RR+
Sbjct: 323  QQGILY-QGRGSAANSVVCYCLQITSVDPRQIAVLFERFISKERDEPPDIDVDFEHERRE 381

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  KYG +R A   T  S + K+A+R VG+AL +  +Q+D   K I N       
Sbjct: 382  EVIQYIYQKYGRQRAALAATVISYRFKSAVRQVGKALGIEETQLDFFLKNI-NRRDRQAG 440

Query: 489  LQAIADDSRFREARLADPSVD--RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             Q      +  E  L   S+     +++ +++ G  RH S H  G VI   PL +LVP+ 
Sbjct: 441  WQV-----QLVELGLQPDSLKGQHFIQLVEEIIGFPRHLSQHVGGFVISSGPLYELVPVE 495

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV---DLSLIPF 603
                 +  + Q++   +E   L+K D L L  LT ++K    + Q   +           
Sbjct: 496  NAAMPERTIIQWDKDDLESLKLLKVDVLSLGMLTAIRKCFRSIEQHHQQRLSIADITRRQ 555

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            DD   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI  D +  +
Sbjct: 556  DDQAVYKMIQKADTIGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGPIQGDMVHPF 615

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R++G+E I      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM   K
Sbjct: 616  LKRRDGEESISYPSVHVQEVLERTLGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMAAWK 675

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                + K K + I+G  + G     A  IFE +  F +YGF +SH+A++AV++Y +AW+K
Sbjct: 676  KNGHVFKFKTKLINGMLERGYELDFAERIFEQICGFGEYGFPESHSASFAVLAYCSAWLK 735

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRI 835
             +YP EF  A +  +        +  QDA++  I ++P  VN    + ++     G+  I
Sbjct: 736  HYYPAEFYTALLNSQPMGFYSPSQLVQDAKRHGIAVLPICVNFSNAEHQLVRLTSGELAI 795

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                  IKG+       ++     + +  + +    +   K  + +  +  F    D   
Sbjct: 796  RLGFNLIKGLSHEGITRLLTHRPAQGYQCISEVKQILRQAKDIQSLASANAFYQLADNRY 855

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R Q++ +LD +                 +F     T ++   L K S   + +    +
Sbjct: 856  LARWQVMDNLDEL----------------PLFQTLPSTSNN--PLPKPSDYQNVL---ED 894

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G   + HP+ + +            +       + + +  +V  KQ   T  G  +
Sbjct: 895  YAATGLSLAEHPVAMLEKAGGLTRFTRANQLKQCSHRSLVTVIGLVTGKQSPGTAAG--V 952

Query: 1016 GWVTFSEPAKEYEANFF 1032
             + T  +         +
Sbjct: 953  TFFTLEDDTGNINVVVW 969


>gi|125717690|ref|YP_001034823.1| DNA polymerase III DnaE [Streptococcus sanguinis SK36]
 gi|125497607|gb|ABN44273.1| DNA-polymerase III alpha-chain, putative [Streptococcus sanguinis
            SK36]
          Length = 1069

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/1035 (29%), Positives = 496/1035 (47%), Gaps = 103/1035 (9%)

Query: 3    QYLEKSPSFV-HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            Q + K  + V  L   + YS ++  + +   + K        + + D +NL+ A  F ++
Sbjct: 26   QSMFKEKNVVIQLDTKTVYSFMDSLVPIKKYVQKAKDLGYSHLGMMDVDNLYGAYHFLEE 85

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A +AG+QP++G +L +                     + LL   ++GY+ L++ VS + +
Sbjct: 86   AESAGLQPLLGLELSL-------------IKAEQELHLRLLALDSQGYRNLMK-VSTLKM 131

Query: 122  LDQGKQSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            + Q         +W       +GL ++     G            VA+  L         
Sbjct: 132  MGQ--------KNWEDFQHLFKGLAVIVPAFDG------------VADLDL--------- 162

Query: 181  RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                      G D Y              P +  +   +    D E   +L A+  +  +
Sbjct: 163  ----------GLDFYVGVFPATPQQEFGRPTLPLHTVRYFDRGDLETLQMLRAIRENASL 212

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +     +    +L     +   F +  PE+L N  ++ R   + +      LPRF    
Sbjct: 213  REIG--SLPNHEFLLAPDALAGAFKETFPESLANLEKLVRDVHYDIN-RELKLPRF---- 265

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              + ++    ELR ++ AGL+ R        G   + Y++RLD EL VI +M F  YFLI
Sbjct: 266  --NRERPAVEELRERSEAGLKKR--------GLTGKLYQERLDQELAVIHQMGFDDYFLI 315

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++ +     +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD D
Sbjct: 316  VWDLLRFGRSQGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDID 375

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID     R E IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I
Sbjct: 376  IDIPDVYRPEFIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKI 435

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                +      A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L
Sbjct: 436  RFGDSLT---SAYEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDL 492

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDL 598
            +  +P+      D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V +++
Sbjct: 493  TDQIPL--KYGEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLEKYKVDIEI 550

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + I  +D  T  L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I
Sbjct: 551  AEIDLEDANTLKLFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYI 610

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMG
Sbjct: 611  DNFVKRKHGLEQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMG 670

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK   EM + +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+
Sbjct: 671  KKNAAEMHRMQEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAF 730

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
             K HYP  F    +     +      +  DA  F+ +  P S+N      K  D +I+  
Sbjct: 731  FKAHYPDVFFDVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLG 784

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L  IKG+    A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R
Sbjct: 785  LKNIKGLPRDLAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNR 844

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             ++L +L N+  +A        ++  ++FA    ++++          + + +FE EQ +
Sbjct: 845  QKILANLPNLFVFA--------DELGSLFADTTYSWTEA------QDFSDAEKFELEQSI 890

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +G   S HPL      L K   + +         +  R+ A V + +  +T+KG  + ++
Sbjct: 891  IGVGLSDHPL----VKLAKEADQPFSWISELTENSRARILAEVQTIKTIRTKKGENMAFL 946

Query: 1019 TFSEPAKEYEANFFP 1033
              S+  K+ +   FP
Sbjct: 947  QVSDTKKKLDVTLFP 961


>gi|327489345|gb|EGF21138.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK1058]
          Length = 1069

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/1025 (28%), Positives = 492/1025 (48%), Gaps = 102/1025 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36   IQLDTKTVYSFMDSLVPIKKYVQKAKDLGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G         +L +    K        + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 96   GL--------DLSLIKAEKE-----LHLRLLALDSQGYRNLMK-VSTLKMMGQ------- 134

Query: 132  CLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              +W       +GL ++     G  D                    L  D  Y+ +    
Sbjct: 135  -KNWEDFQHLFKGLALIVPAFDGVADL------------------DLGMD-FYIGVFPAT 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                               P +  +   +    D E   +L A+  +  + +     +  
Sbjct: 175  PQ------------QEFGRPTLPLHTVRYFDRGDLETLQMLRAIRENASLREIG--SLPN 220

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              +L     +   F +  PE+L N  ++ R   + +      LPRF      + ++    
Sbjct: 221  HEFLLAPDALAGAFKETFPESLANLEKLVRHVHYDIN-RELKLPRF------NRERPAVE 273

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ELR ++ AGL+ R        G   + Y++RLD EL VI +M F  YFLIV D +++ + 
Sbjct: 274  ELRERSEAGLKKR--------GLTGKLYQERLDQELAVIHQMGFDDYFLIVWDLLRFGRS 325

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E
Sbjct: 326  QGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPE 385

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +     
Sbjct: 386  FIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT--- 442

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+    
Sbjct: 443  SAYEKNMGFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL--KY 500

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D ET
Sbjct: 501  GEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIAEIDLEDAET 560

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E  G    L+ +QP   E+++A  SL RPG  D I  +  RK+G 
Sbjct: 561  LKLFAAGQTKGIFQFEQPGAISLLKRVQPVYFEEVVATTSLNRPGASDYIDNFVKRKHGL 620

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + 
Sbjct: 621  EQVELIDDSLTDILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMHRM 680

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 681  QEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDVFF 740

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA  F+ +  P S+N      K  D +I+  L  IKG+   
Sbjct: 741  DVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLPRD 794

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+
Sbjct: 795  LAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNL 854

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +A        ++  ++FA    ++++          + + +FE EQ ++G   S HPL
Sbjct: 855  FVFA--------DELGSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSDHPL 900

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                  L K   + +         +  ++ A V + +  +T+KG  + ++  S+  K+ +
Sbjct: 901  ----VKLAKEADQPFSWISELTENSRAKILAQVQTIKTIRTKKGENMAFLQVSDTKKKLD 956

Query: 1029 ANFFP 1033
               FP
Sbjct: 957  VTLFP 961


>gi|322374440|ref|ZP_08048954.1| DNA polymerase III, alpha subunit [Streptococcus sp. C300]
 gi|321279940|gb|EFX56979.1| DNA polymerase III, alpha subunit [Streptococcus sp. C300]
          Length = 1033

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/1023 (29%), Positives = 488/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +AI D +NL+ A  F +     GI+P+I
Sbjct: 3    AQLDTKTVYSFMESVVSIEKYVQMAKEYGYSHLAIMDVDNLYGAYHFLEATRKHGIRPLI 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +                    S+  L  + +GYQ L++L +   L   G++    
Sbjct: 63   GLEMTL-------------VKDEENISLRFLALSTKGYQELMKLST---LKMTGRKKWSD 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L+++               I   +F    Q+          L  D  ++ +     
Sbjct: 107  FTSHLEDVA--------------IVVPYFNGVEQL---------DLGHD-YFIGVSPDTP 142

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             + +              P++         +ED +   +L AV  +  + + D    +  
Sbjct: 143  QEVFTR------------PILPLYQVNSFEKEDLQVLQILSAVKDNVSLREVD--VHSQQ 188

Query: 252  HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                  S++ + F    P+AL N   +    S+ +      LPRF  +            
Sbjct: 189  GIFLPASDLEAQFKNRFPQALANLQGLIENVSYQIDPSL-KLPRFNPE------------ 235

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R  QG   KG  +  Y +RL+ EL VI  M F  YFL+V D +++ +  
Sbjct: 236  --RPAVEELRERAEQGLSDKGLTSAIYHERLNEELAVIHDMGFDDYFLVVWDLLRFGRSQ 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ AY+L IT IDP+  +L+FERFLN +R +MPD DID     R E 
Sbjct: 294  GYYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDLYRPEF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV+++YG + VAQI+T+ +  AK A+RDV +   +P  ++  + K I           
Sbjct: 354  IRYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKISFRDTLTT--- 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI++K+EG  R  S HAAG+V+ D+ L+  +P+     
Sbjct: 411  AYEKNLQFRQVINSKIEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDLTDYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
             D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET 
Sbjct: 469  EDMLITQYDAHGVEANGLLKMDFLGLRNLTFVQKMQELLAESGGIHLRIEDIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E  G  + L+ +QP   E+++A  SL RPG  D I  +  RK+GKE
Sbjct: 529  ALFAAGNTKGIFQFEQPGAIRLLKRVQPQVFEEVVATTSLNRPGASDYIDNFVARKHGKE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  + P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK  +EM   K
Sbjct: 589  KVTVLDPALEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAKEMHLMK 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E FI+GA K G ++  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  EDFITGAMKLGHTEEKANQVFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFFQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA Q   ++ P ++N+     K+   +IY  L AIKG+    
Sbjct: 709  VMLNYSSSD------YIVDALQMGFEVAPLAINSIPYHDKISQKKIYLGLKAIKGMPRDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            +  I+E   ++PF S+EDF +R+        +L SLV  G  D F  +R ++L +L N+ 
Sbjct: 763  SYWIIE---NRPFSSIEDFITRLPKNYKKLSLLTSLVELGLFDEFDKNRQKILVNLPNLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             + +        +   +FA    ++++            + +F  EQ ++G   S HPL 
Sbjct: 820  VFVE--------ELGGLFADTNYSWTEA------DDFTEAEKFYKEQELIGVGISPHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 L K  +    +      G+   L   V   +  +T+KG  + ++   +   + + 
Sbjct: 866  ----TLAKQALYPTTQITNLTEGSQTTLLVEVQKIKVIRTKKGESMAFLQVHDSKSKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TVF 924


>gi|296283965|ref|ZP_06861963.1| DNA polymerase III alpha chain [Citromicrobium bathyomarinum JL354]
          Length = 1190

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/1091 (21%), Positives = 432/1091 (39%), Gaps = 112/1091 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L + S +S L G+    +++         A+ I D N +   +    +A    ++P
Sbjct: 27   PFVELGLVSCFSFLRGSSDAVDLVTTARMLGYDALGIADANTMAGVVRIHTEAKTLKLRP 86

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-----Q 124
            +IGC                +       + +        Y  L  L+S+  +       Q
Sbjct: 87   VIGC----------------RIETVEGLAFLAYPKDRAAYGCLCRLISQGRMQTLSGKWQ 130

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSS-------------------------GPIDRAF 159
             K    I L+ L +   +  ++L                              G +    
Sbjct: 131  EKGVCEIDLAMLADHAEDVQLILLPPDDLDVRFTIAVPSNVIPFRHPSSELQKGSVSPDQ 190

Query: 160  FFNSSQVAE-----KRLLTF-KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVA 213
               + +V       + L     +L   R       +RG D  R  ++  +A  H L L+A
Sbjct: 191  VRGNDKVELTAPFPRLLAHLTAQLPTLRHLAAAYLYRGDDIARIDRLDAMAREHGLSLLA 250

Query: 214  TNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALE 272
            TN+  + + E    +DV+ A+ H T V           + +LK   EM+ +F+  P A+ 
Sbjct: 251  TNDVHYHAAERRPLNDVMTAIRHKTTVEAAGHLLHANAERHLKLPEEMIRLFARWPHAIM 310

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
             + +IA  C+F L+      P+    +        +  L  +   G   R +    AK  
Sbjct: 311  ASRDIADACTFSLEDLKYEYPKRAYPDGM----TPQQYLEQQTWEGANWRYSNVIPAK-- 364

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV-GPGRGSGAGSVTAYALT 391
                 +  L++EL +I ++  + YFL + + + +A+    P+   GRGS A S   + L 
Sbjct: 365  ----VKTTLEYELELIGKLDLAPYFLTIKEIVDFARSQTPPILCQGRGSAANSAVCFCLG 420

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT +DP    LLF+RFL+ +R   PD D+DF  +RR+EVI+++  +YG +R     T   
Sbjct: 421  ITSVDPAEHQLLFDRFLSEERSEPPDIDVDFEHERREEVIQHIYKEYGRDRAGLCATVIH 480

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
             + + A+R+VG+A+ +       L + +       +    +A+        + DP + R+
Sbjct: 481  YRPRMAIREVGKAMGLSEDVTASLARTVWGGWGREIGEDHVAETG----MDITDPHLRRV 536

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            L ++ ++ G+ RH S H  G ++ D  L++ VP+      D    +++   I+  G+ K 
Sbjct: 537  LTLTSQMIGMPRHLSQHVGGFILTDGLLTETVPIGNGAMPDRSFIEWDKDDIDDLGIFKV 596

Query: 572  DFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            D L L  LT ++K LD L     +   L+ IP +D   Y +L    +LG+FQ+ES     
Sbjct: 597  DVLALGMLTCIRKGLDLLEDHYERPLTLATIPQEDPAVYDMLCKGDSLGVFQVESRAQMN 656

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKN------------GKEKIVSIHP 676
             L  +QP    D++  V++ RPGPI  D +  Y  ++                       
Sbjct: 657  MLPRLQPRQFYDLVVQVAIVRPGPIQGDMVHPYLKQRRLARAGKTDFQLPAPAPEHGPPD 716

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISG 735
             +  +L  T GV I+QEQ M+IA   + +S +EA+ LRRAM   + +  +   +E  +  
Sbjct: 717  ELSSILGRTFGVPIFQEQAMKIAIDAAKFSPAEANRLRRAMATFRSRGMVHAHEEMMVGR 776

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              + G     +   F+ +  F +YGF +SHAA++A + Y ++W+K HYP  F  A +  +
Sbjct: 777  MIERGYDPDFSQRCFDQIKGFGEYGFPESHAASFAHLVYVSSWLKCHYPAAFACALLNSQ 836

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----------DNRIYYSLAAIKG 844
                    +  +DA +  + ++P  VN    D  +               +   L  I G
Sbjct: 837  PMGFYAPAQIVRDAAEHGVAVLPADVNGSDWDCTLEDIPPRAGEDKRHMALRLGLRQIDG 896

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
                 A  ++     + P+  + +   R          +E L  A A       R Q L 
Sbjct: 897  FPEHVAAKLVAERIENGPYRDVAELRDRAGLA---PSYVERLASADAFQSLDLPRRQALW 953

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE-KFSVENSSVRFENEQRVLGFY 962
               ++                 +F            +     V   S     + +     
Sbjct: 954  DARSLI----------AAPDLPLFRAAAEREEGAEKVRTALPVMPLSEEVVADYQTTRLS 1003

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
               HP+   +  L + G     +       + +++A +V+ +Q+  + KG  + ++T  +
Sbjct: 1004 LKAHPMAFLRADLAERGFVRACDLRERKFRSMVQVAGVVLIRQRPGSAKG--VCFITLED 1061

Query: 1023 PAKEYEANFFP 1033
                     +P
Sbjct: 1062 ETGVVNLVVWP 1072


>gi|327473794|gb|EGF19212.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK408]
          Length = 1069

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1025 (29%), Positives = 495/1025 (48%), Gaps = 102/1025 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36   IQLDTKTVYSFMDSLVPIKKYVQKAKDLGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +L +  ++                 + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 96   GLELSLIKEE-------------QELHLRLLALDSQGYRNLMK-VSTLKMMGQ------- 134

Query: 132  CLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              +W       +GL ++     G            VA+  L                   
Sbjct: 135  -KNWEDFQHLFKGLAVIVPAFDG------------VADLDL------------------- 162

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D Y              P +  +   +    D E   +L A+  +  + +     ++ 
Sbjct: 163  GLDFYVGVFPATPKQEFGRPTLPLHTVRYFDTGDLETLQMLRAIRENASLREIG--SLSN 220

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              +L     +   F +  PE+L N  ++ R   + +      LPRF      + ++    
Sbjct: 221  HEFLLAPDALAGAFKETFPESLANLEKLVRHVHYDIN-RELKLPRF------NRERPAVE 273

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ELR ++ AGL+ R        G   + Y++RLD EL VI +M F  YFLIV D +++ + 
Sbjct: 274  ELRERSEAGLKKR--------GLTGKLYQERLDQELAVIHQMGFDDYFLIVWDLLRFGRS 325

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E
Sbjct: 326  QGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPE 385

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +     
Sbjct: 386  FIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT--- 442

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A   +  FR+   +     R  +I++K+EG  R  S HAAG+V+ D  L+  +P+    
Sbjct: 443  SAYEKNMGFRQIINSKLEYQRAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL--KY 500

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D +T
Sbjct: 501  GEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIADIDLEDLDT 560

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G 
Sbjct: 561  LKLFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGL 620

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + 
Sbjct: 621  EQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMHRM 680

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 681  QEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDVFF 740

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA  F+ +    S+N      K  D +I+  L  IKG+   
Sbjct: 741  DVMLNYSSSD------YITDALSFDFETAHLSINNIPYHDKFQDKKIFLGLKNIKGLPRD 794

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+
Sbjct: 795  LAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNL 854

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +A        ++  ++FA    ++++          + + +FE EQ ++G   S HPL
Sbjct: 855  FVFA--------DELGSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSNHPL 900

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                  L K   + +         +  R+ A V + +  +T+KG  + ++  S+  K+ +
Sbjct: 901  ----VKLAKEADQPFSWISELTENSRARILAEVQTIKTIRTKKGENMAFLQVSDTKKKLD 956

Query: 1029 ANFFP 1033
               FP
Sbjct: 957  VTLFP 961


>gi|323359224|ref|YP_004225620.1| DNA polymerase III, alpha subunit [Microbacterium testaceum StLB037]
 gi|323275595|dbj|BAJ75740.1| DNA polymerase III, alpha subunit [Microbacterium testaceum StLB037]
          Length = 1137

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1084 (25%), Positives = 459/1084 (42%), Gaps = 106/1084 (9%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +    +  +  L  HSSYS L+GA S   ++++       A+A+TD +  +  + F++ A
Sbjct: 51   ERPADTVPYAELHAHSSYSFLDGASSPEELVEEAERLGLHALAVTDHDGFYGIVRFAEAA 110

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
             A  +Q + G +L +++        Q     P    +++L    EGY RL   ++   L 
Sbjct: 111  EARAVQTVFGAELSLELP-----APQKGEADPAGSHLLVLARGEEGYHRLAAAITHAQLT 165

Query: 123  DQGKQSVRICLSWLQE----IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
               K      L+ L E           +LTG   G + +A      + A + L     LF
Sbjct: 166  GAEKGRPVYDLAELSERSGGPADPHWAVLTGCRKGAVRQALASAGPEAAARELDALVDLF 225

Query: 179  -GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
              + ++V L       D      +  LA    LP++ATNN  +   E       + AV  
Sbjct: 226  GAEAVFVELMDQGNPLDSRHNDVLAGLAAERGLPILATNNVHYAVPEKELLAAAVAAVRA 285

Query: 237  STVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
            +  + + D         +L++ +EM + F+  P A+  TV +A   +F L+   P LP+ 
Sbjct: 286  NRGLDELDGWLPAHAGAHLRSGAEMAARFARYPGAVARTVTLADELAFPLRRAKPALPKQ 345

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
               E         + LR+     +  +           + + R R++ EL VI    F G
Sbjct: 346  DVPEG----HTPMSWLRHLVWEAVPRKYPN-------LSDEDRDRIERELGVIEMKDFPG 394

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV   +  A++  I +  GRGS A S   + L IT +D + + L FERFL+  R   
Sbjct: 395  YFLIVYGIVAEARRRGI-LCQGRGSAANSAVCFLLEITAVDSIFYKLPFERFLSSLRDEE 453

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF  DRR+E+I++V   YG ER AQ+      + K A+RD+ RAL     Q D  
Sbjct: 454  PDIDVDFDSDRREEIIQWVYETYGRERAAQVANVIQYRPKNAVRDMARALGHSPGQQDAW 513

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             K +    A               E        D+++E + +L    RH   H+ G+V+ 
Sbjct: 514  SKQVERWGAT-------------LETGADHDIPDQVIEFAAELLKAPRHLGIHSGGMVLT 560

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
            DRP+ ++VP+      +  V Q++       GL+KFD LGL  L  LQ   D +    G 
Sbjct: 561  DRPVGEVVPIEHARMENRTVIQWDKDDAAWMGLVKFDLLGLGMLAALQYCFDLIRDATGE 620

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              +LS +P ++   Y +L    ++G+FQ+ES      L  +QP    D++  ++L RPGP
Sbjct: 621  AWELSTLPKEEKAVYDMLCRADSIGVFQVESRAQMGLLPRLQPRKFYDLVVQIALIRPGP 680

Query: 655  IDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            I       +  RK G+E+I  +HP + P+L+ T GV ++QEQ+MQ+A  +   +  +AD 
Sbjct: 681  IQGGAVHPFVRRKLGQEEITYVHPKLKPVLERTMGVPVFQEQLMQMAVAVGNCTAEDADQ 740

Query: 713  LRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAMG K   E +D  +E+   G ++NG+   +A  ++  +  FA++GF +SH+ ++A+
Sbjct: 741  LRRAMGSKRGLERIDSLREKLYEGMAENGLVGHVADELYAKIQAFANFGFAESHSLSFAL 800

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP------- 824
            + Y ++W+K HYP  FLA  +  +            DAR+  +++  P +          
Sbjct: 801  LVYASSWIKLHYPAAFLAGLLRAQPMGFYSPATLTADARRHGVRVRRPDLLRSGVEAGME 860

Query: 825  -----------------------------------CVDFKVGDNRIYYSLAAIKGVGTTT 849
                                                   + G   +   LA + G+GT  
Sbjct: 861  PLDDAGERGPTGLDACAEAHQPPTGEFDRSEPDETAAHRRDGAFAVRLGLAGVTGIGTNV 920

Query: 850  ARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ-SLDN 907
            A  I+ E      +  + D   R     L    LE+L  AGA +  G+SR + +  S   
Sbjct: 921  AERIVSERERGGAYRDMRDLVRRT---GLITAQLEALATAGAFESLGHSRREAIWLSGSA 977

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
                 +++  +       +F                +   S     ++    G     HP
Sbjct: 978  ALDRPEFLPDSLVAVQPPLF----------------TDPTSYELLASDLWATGLSADDHP 1021

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L  ++  L   G+    E         I +A +V  +Q+  T  G  I ++   +     
Sbjct: 1022 LTHFRSALDARGVLTSRELQTAETDRRIEVAGLVTHRQRPATASG--ITFLNLEDEHGLM 1079

Query: 1028 EANF 1031
                
Sbjct: 1080 NIIC 1083


>gi|90423241|ref|YP_531611.1| error-prone DNA polymerase [Rhodopseudomonas palustris BisB18]
 gi|90105255|gb|ABD87292.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB18]
          Length = 1112

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/1064 (22%), Positives = 429/1064 (40%), Gaps = 89/1064 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  + + +++S L G     + + + +  + P I I D N L   +    +     +
Sbjct: 2    TPVYAEIGITTNFSFLRGGSHPQDYVQQASELRLPVIGIADHNTLAGVVRAYSELRNERL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
                        +  L +  +        P I++       Y RL +L++R       K 
Sbjct: 62   ----------AHKPRLLIGAR-LVFIDGTPDILVYPRDRAAYGRLCQLLTRGKRAAD-KG 109

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               + L  L E     L++L                   A + L   +    D +++   
Sbjct: 110  ECHLGLDDLAEFAEGQLLVLALPHRFE---------DAEAGRLLARLQGFAADGVWLAAS 160

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDR 245
              +RG DR R  ++ QLA    LPL+ATN  L+         DVL  V    T+ S   R
Sbjct: 161  LLYRGDDRRRLQRLQQLAAQARLPLLATNEVLYHHPARRPLQDVLSCVREKLTLESIGTR 220

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + +LK   EM  +F D P+A+  T+  A R  F L       P           K
Sbjct: 221  LEANAERHLKPAQEMARLFRDCPQAIAETMRFAARIQFSLDQLQYQYPNEPVPAG----K 276

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L +   AG      +G           ++ L  EL +I +++++ YFL V D + 
Sbjct: 277  TAQRHLEDLTWAGAHKYFPRGISPH------LKKTLRKELRLIRKLRYAHYFLTVHDIVC 330

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  NI +  GRGS A S   Y L IT ++P+   LLFERF++ +R+  PD D+DF   
Sbjct: 331  YARSQNI-LCQGRGSAANSAVCYVLGITAVNPIEIDLLFERFISKERLEPPDIDVDFEHS 389

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV++Y+  +YG +R A I T    + ++A+RDVG+ L +       L   +      
Sbjct: 390  RREEVMQYIYRRYGRDRAAIIATVIHYRPRSAIRDVGKVLGLTEDVTSALADTVWGSWGR 449

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++   +            +P + R ++++ +L G  RH S H  G V+ +  L   VP+
Sbjct: 450  GLNEMQVTQ----AGLDPRNPLIARAIDLASELIGFPRHLSQHVGGYVLTEDRLDSYVPI 505

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604
                  D    +++   ++   ++K D L L  LT ++K  D + A +G +  L+ +P +
Sbjct: 506  GNAAMDDRTFVEWDKNDVDTLKMMKVDVLALGMLTCIRKCFDLIDAHKGERWALATVPRE 565

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
                Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y 
Sbjct: 566  VPAVYDMLCRSESLGVFQVESRAQMNMLPRLKPRQFYDLVIEVAIVRPGPIQGDMVHPYL 625

Query: 663  NRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
             R+N +E +    P         +  +L +T GV ++QEQ M+IA   + +S  EA+ LR
Sbjct: 626  RRRNAEEPVYYPSPSPQHGDKDELRKVLHKTLGVPLFQEQAMRIAIEAAKFSPEEANGLR 685

Query: 715  RAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RAM   +    + K + + ++     G     A N F+ +  F  YGF +SHAA++A + 
Sbjct: 686  RAMATFRNVGTIGKFESKMVNNMISRGYDPVFAKNCFDQIKGFGSYGFPESHAASFAQLV 745

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831
            Y ++W+K  +P  F    +  +        +  +DAR   +++    V+       +   
Sbjct: 746  YVSSWLKHFHPDAFCCGLLNSQPMGFYAPAQIVRDARTNGVEVRAVDVSFSFGQNTLEER 805

Query: 832  ---DNRIYYSLAAIKGVG------------------TTTARHIMEASADKPFDSLEDFCS 870
                + +      I G                       A  I+E    + F SLE F  
Sbjct: 806  CGRYHALRLGFRQIDGFRCTDSDAAHLRLQVGRPEVEDWAARIVETRRRQRFVSLEQFAR 865

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
               +  L +R L  L  A A    G  R   L ++  +                 +F   
Sbjct: 866  ---ATALPKRALLLLAEADAFRSIGLDRRAALWAVRRLPDDVA----------LPLFEIS 912

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
                              +     + + +     GHP++  + +  +  +       A  
Sbjct: 913  AAREQPDEAARPLPQMPLAEHVVADYQTIRLSLKGHPMEFLRAMFDRERVVTCAAVSALR 972

Query: 991  R-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            R G   R A +V+ +Q+  +  G  + ++T  +         +P
Sbjct: 973  RNGPRSRCAGVVLVRQRPGSANG--VVFMTLEDETGIANVVVWP 1014


>gi|56461666|ref|YP_156947.1| DNA polymerase III alpha subunit [Idiomarina loihiensis L2TR]
 gi|71151826|sp|Q5QUT9|DNAE2_IDILO RecName: Full=Error-prone DNA polymerase
 gi|56180676|gb|AAV83398.1| DNA polymerase III alpha subunit [Idiomarina loihiensis L2TR]
          Length = 1039

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/1045 (23%), Positives = 455/1045 (43%), Gaps = 99/1045 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS L  A S   ++ +       AIAITD  ++   ++  Q++ A  I+ +
Sbjct: 16   FAELHSLSHYSFLRSAASPEELVRRADDLGYAAIAITDECSVAGIVKAYQESKARDIKLV 75

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +                   P V ++V+L  T E Y  L + ++      + K   +
Sbjct: 76   VGSEF----------------RVPEVGTLVVLAPTREAYAELCKKITLFRSRSE-KGHYQ 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL--TFKKLFGDRLYVNLQR 188
              +    +  ++ L++             +      A+   +    K ++  R ++  +R
Sbjct: 119  ANIDDFFDGFSQCLLL-------------WQPDFSQAQLLAIGEKLKSVWQQRFWLLYER 165

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRP 246
            H   D  R    +V+L    ++ +         + E    +D+L A+ H  ++  Q    
Sbjct: 166  HYQADDERAFQAMVELQQAVKVKVTCAGGVCMATIEQQPLYDILNAIQHGGSLAHQPGLA 225

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +H+L++ SE+   +    + L  T+ IA++C F L       P  +  E       
Sbjct: 226  SNNAEHHLRSLSELQQCYPQ--KWLAETLVIAQQCQFCLSELRYEYPAELVPEGMSAS-- 281

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+     G   R  QG        +  +     EL++I    +  +FL + D +++
Sbjct: 282  --GYLKQLTEQGARWRYPQGV------PESIKALYLKELSLIKEQSYEPFFLTIHDLVRF 333

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I    GRGS A SV  Y L IT ++P +  +LFERF++ +R   PD D+DF  +R
Sbjct: 334  AREQGILF-QGRGSAANSVVCYCLGITAVNPAQIQVLFERFISKERNEPPDIDVDFEHER 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG +R A   T  + + K+A RDVG+AL     Q+    + +       
Sbjct: 393  REEVIQYIYRKYGRQRAALAATVITYRFKSAFRDVGKALGFSEQQLQYFRRNLDRRD--- 449

Query: 487  VSLQAIADDSRFREARLADPSV------DRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                   + S  ++     P V        LL+ +++L G  RH S H  G VI    LS
Sbjct: 450  ------KEQSWQQQLVQQHPEVTNSVRGQHLLQFTEQLMGTPRHLSQHVGGFVIAADDLS 503

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLS 599
            +LVP+     +D  V Q++   +E  GL+K D L L  LT L+K L  +  R  +   ++
Sbjct: 504  RLVPVENASMTDRTVIQWDKTDLESLGLLKVDVLALGMLTALRKMLALINLRYDQQLTMA 563

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DN 657
             IP +D   Y  L T  ++GIFQ+ES      L  ++P    D++  +++ RPGPI  D 
Sbjct: 564  TIPQEDSRVYQQLQTADSMGIFQIESRAQMNMLPRLKPKTFYDLVIQIAIVRPGPIQGDM 623

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +  +  R+ G E++      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM
Sbjct: 624  VHPFLRRRAGLEEVDYPSDEVKSVLERTLGVPIFQEQVIKLAMVAAGFSGGEADQLRRAM 683

Query: 718  GKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
                +   + + +++ I+G  + G  +  A  +F  +  F  YGF +SH+A++A ++Y +
Sbjct: 684  ASWGQNGHLTRFEDKLINGMLERGYKQEFAERLFRQICGFGQYGFPESHSASFANLAYVS 743

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-------K 829
            +W KT++P  F    +           +  QDA++  +  +   +N    ++        
Sbjct: 744  SWFKTYHPAAFYVGLLNSLPMGFYSASQLVQDAQRHGVAFLAADINASDWNYCWLPKEDT 803

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              D  +   L  I+G+  +  +H +    +  F S+ +       +K   R  +    A 
Sbjct: 804  NSDETVRMGLRQIQGLSESRIKHTLMQRPEDGFTSMHEL------RKSGLRDSDINALA- 856

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
                    R   L+S+   +  A W   + +++   +F + K   + ++       E  +
Sbjct: 857  --------RADALKSIAGHRHQAHWQSLSMSDQQMPLFENVKDRPARQLPAPD---EPDN 905

Query: 950  VRFENEQRVLGFYFSGHPLDVYK--PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            ++   +    G     HPL + +  P L+        + +    G  + LA +V  +Q+ 
Sbjct: 906  IK--ADYESTGLTLGRHPLALLRNNPELK--NCVLASDLMTCRSGQVLTLAGLVTCRQRP 961

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             TR G  + ++T  + +       +
Sbjct: 962  GTRSG--VTFLTLEDESGNSNVVVW 984


>gi|222087893|ref|YP_002546431.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter
            K84]
 gi|221725341|gb|ACM28497.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter
            K84]
          Length = 1133

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/1063 (23%), Positives = 442/1063 (41%), Gaps = 84/1063 (7%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              S  F  +   S++S LEGA     ++          + + D N++   ++    A   
Sbjct: 8    SGSAPFFEIGARSNFSFLEGASHPEEMVLGAKIAGLAGLGLADRNSVAGVVKAHVIAKQH 67

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G +   G +L                     P I+      +G+  L  L+S   L  + 
Sbjct: 68   GYRFQPGARLVFS---------------DGTPDILAFPQNRQGWAHLCRLLSAGNLRGE- 111

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            K    +  S L E G E ++ L    +  ++           E+ L      FG +L++ 
Sbjct: 112  KGVCILNESNLLEWGDEMMLALV-PDAASVETP---EGQAKLEECLARLWMRFGRKLHMV 167

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L   + G DR   + +  LA  + + L+A+N  L+ + E     D+++++     +++  
Sbjct: 168  LSPAYDGRDRLVFATLSILALRNGVRLIASNEPLYHATERKPLADIVVSIREHVPIAEAG 227

Query: 245  -RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             +     + YLK  +EM  +F D P+A+ NT +   R SF L       P          
Sbjct: 228  FKLAANAERYLKGGAEMARLFRDYPKAIANTQKFFNRLSFSLDELKHNYPDESVP----- 282

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +     L   A  G + R       K        +++D+EL +I   ++  YFL V   
Sbjct: 283  GETVSETLERLAREGAKRRYPDKIPEK------VAKQIDYELALIRERQYEPYFLTVHRI 336

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+  NI +  GRGS A S   Y L IT+++P   +LLFERF++ +R   PD D+DF 
Sbjct: 337  MEYARSRNI-LCQGRGSAANSTVCYCLGITEVNPEITTLLFERFISTEREEPPDIDVDFE 395

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD+VI+++ + Y  E         S +A++A R+V +A  +       L   +    
Sbjct: 396  HEKRDQVIQFIYDHYSKEHAGLTAAVTSYRARSAGREVAKAFGLSEDVQSALASGVWGWS 455

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +S      ++R     L D +  R+L  +  L G  RH + H  G VI    L ++V
Sbjct: 456  TEELS----EREARLAGLDLKDKTTKRVLSYASTLMGFPRHLTQHVGGFVITRDRLDEVV 511

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----DLS 599
            P+      D  + ++N   ++   ++K D L L  LT L K+ D L           DL 
Sbjct: 512  PIMHTAMKDRYMIEWNKDDLDSLNILKIDVLALGMLTCLAKAFDLLLLHYDVKKQLADLG 571

Query: 600  LIPFDDH-ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID-- 656
               + D    Y+++    T+G+FQ+ES      L  +QP    D++  V++ RPGPI   
Sbjct: 572  SGEYPDRIPVYNMICRADTIGVFQIESRAQMSMLPRLQPRKFYDLVIEVAIVRPGPIQGN 631

Query: 657  NIVVYNNRK---NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             +  Y  R+      + +    P +  +LK T GV ++QEQ MQIA   +G++ +EAD L
Sbjct: 632  MVHPYLKRREADRAGKDLDYPSPELKEVLKRTLGVPLFQEQAMQIAITAAGFTPAEADKL 691

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM   K    +   +++ + G       +  A N FE +  F +YGF +SHAA++A++
Sbjct: 692  RRAMATFKRTGTIHTFEKKMVEGMVARNYDREFAKNCFEQIKGFGEYGFPESHAASFALL 751

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y ++W+KT+YP  F AA +  +        +  +DAR+  +++ P  +N    D  + +
Sbjct: 752  VYASSWIKTYYPDVFCAAMLNSQPMGFYAPAQLVRDAREHGVEVRPVDINRSEWDSLLEE 811

Query: 833  NRI----------------------YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
             R                             +KG+  T    ++       + S+ D   
Sbjct: 812  ARFDRNAIEPRHASMREVIRTNRAVRLGFRQVKGLSETDMGELVARRGSG-YASVRDLWL 870

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            R     L +  +E L  A A    G  R + L ++  +   AQ   +       ++    
Sbjct: 871  R---SGLAKSAIERLADADAFRSIGLERREALWAVRAL--DAQSAAEKL--PLFDLADRA 923

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
                   ++L          +   + R L      HP+   +    +MGI    +     
Sbjct: 924  DLQVEADVSLPAM---LPGEQVIEDYRYLSLSLKAHPVSFLRADFARMGIVQNRDLPTIA 980

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G  + +A +V+ +Q+  +  G  + ++T  +      A  +P
Sbjct: 981  NGRMVTVAGLVLVRQRPGSANG--VIFMTLEDETGVANAIVWP 1021


>gi|227549925|ref|ZP_03979974.1| error-prone DNA polymerase [Corynebacterium lipophiloflavum DSM
            44291]
 gi|227078021|gb|EEI15984.1| error-prone DNA polymerase [Corynebacterium lipophiloflavum DSM
            44291]
          Length = 1042

 Score =  737 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/1039 (27%), Positives = 456/1039 (43%), Gaps = 100/1039 (9%)

Query: 2    TQYLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            T Y E S   F  L   SSYS L+GA     ++ +       A+A+ D +  + A++F++
Sbjct: 40   TNYPEASHAPFAELHAVSSYSFLDGASEPEEMVRRARDLGITALALLDRDGFYGAVKFAE 99

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AGI  + G +L   + D +               + +L    EGY+ L  L++   
Sbjct: 100  AAAEAGIDTVFGAEL--TLGDRV---------------LPVLAKGPEGYRHLSHLIAAAR 142

Query: 121  LLDQGKQSVRICLSWLQEIGTEG-LIMLTGGSS-GPIDRAFFFNSSQVAEKRLLTFKKLF 178
            ++ + K +V      L      G  I+L G      ID         V  +  ++     
Sbjct: 143  MITREKDAVSYPPLELIAHELAGTCIVLAGWQWVDDIDHLVELFGGNVVREYEVSMTPED 202

Query: 179  GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             D        HR  D Y     +  A    +P  AT +   L+                 
Sbjct: 203  AD-------HHRALDDYPHVPAIVSA----MPAAATRDDARLAAAKR------ALARRDC 245

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +            ++L++  ++ ++     + +   + IA +C+F L + AP LPR+   
Sbjct: 246  LNDAHAHLHPMGANWLRSAEQIEAMLPGAQDKIATALAIAAQCAFTLNLVAPELPRYPTP 305

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
               D    E + LR+  +AG ++R A         A     ++D+EL VI  + F GYFL
Sbjct: 306  TGFD----EMSWLRHITLAGAQLRYATRPDETRAKA---MSQIDYELGVIEELNFPGYFL 358

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV D + +A++ NI +  GRGS A S   +AL IT+ +P+   LLFERFL+PDR   PD 
Sbjct: 359  IVHDLVDFARRENI-LCQGRGSAANSAVCFALGITNAEPISAGLLFERFLSPDRDGPPDI 417

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DID    RR+EVI+Y   +YG +  AQ+    + + K A+RD  RAL       D   K 
Sbjct: 418  DIDIESGRREEVIQYAYERYGRDNAAQVANVITYRTKGAIRDAARALGYAQGAADSWSKG 477

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            I   P                         + + +++ +L+G  RH   H+ G+VI DRP
Sbjct: 478  ISRPP-------------------------EGVEKLASQLKGQPRHLGIHSGGMVICDRP 512

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVD 597
            ++ +VP+      +  V Q++      AGL+KFD LGL  L  L   +D +    G +V+
Sbjct: 513  IADVVPVEWARMENRSVVQWDKDDCASAGLVKFDLLGLGMLEALHHMIDLVRDTAGREVN 572

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  +   D   Y +L     +G+FQ+ES      L  ++P C  D++  V+L RPGPI  
Sbjct: 573  LWELDVADARVYEMLCRADAVGVFQVESRAQLSTLPRLKPRCFFDLVVEVALIRPGPIQG 632

Query: 658  I--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
                 Y  R++GKE IV  HP+++  L +T G+ ++QEQ+MQIA   +G+S  EAD LRR
Sbjct: 633  GSVHPYLRRRDGKEAIVYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFSGREADALRR 692

Query: 716  AM-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            AM  K+  E+M + KERF  G    N I   +A  ++  +  FA YGF +SH+ ++A + 
Sbjct: 693  AMGSKRSPEKMAQLKERFFDGCWATNRIDHDVAETLWAKIVAFAAYGFPESHSQSFASLV 752

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            + +AW K +YP +F    +  +       +   QDAR+  I+++P SVN    +    DN
Sbjct: 753  FFSAWFKCYYPAQFCVGLLRAQPMGFYSPQSLIQDARRHGIEVLPVSVNDSGREAICVDN 812

Query: 834  RI-YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
                  L  IKG+G   A  I  A   +PF  + D   R D    +   +E+L  AGALD
Sbjct: 813  ATIRVGLNLIKGLGDKAADRIEAA---QPFRDIPDLSRRADLSVEH---VEALARAGALD 866

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            CFG  R Q L                   + E +           I        N+    
Sbjct: 867  CFGVDRRQALWQAGVA-----------ATEREGMLPGLSA-----IEAPALPGMNAFELM 910

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +    G      P+++ +  LR  G+           G  +R+A +V  +Q+ +T  G
Sbjct: 911  VADIGATGVTHDKQPMELLRERLRADGLVTAAGLKQVEDGTRVRVAGVVTHRQRPRTASG 970

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
              + +    +         
Sbjct: 971  --VTFFGMEDETGLINVVV 987


>gi|116627933|ref|YP_820552.1| DNA polymerase III DnaE [Streptococcus thermophilus LMD-9]
 gi|116101210|gb|ABJ66356.1| DNA polymerase III catalytic subunit, DnaE type [Streptococcus
            thermophilus LMD-9]
          Length = 1036

 Score =  737 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/1025 (28%), Positives = 491/1025 (47%), Gaps = 100/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS ++  + LN  + +       +I + D +NL++A  F+Q A   G++P+
Sbjct: 2    FAQLDTKSVYSFMDSVVDLNTYVKRAKELGYQSIGLMDRDNLYAAYHFAQLAIRNGLRPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + ++  +                    LL    +GY+ L++L + +     G++   
Sbjct: 62   IGTEANLFYEGRK-------------IPFRLLAKNNQGYKNLMKLATELSS---GQREFT 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                +L +I    LI+ +                         +                
Sbjct: 106  YFSDYLNDIA---LILPS-----------------------EDW----------EPGMSL 129

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G + +   +        + P+V  +   +    D      L A++ +  +S+     +  
Sbjct: 130  GSEVFIGVRPEDAGKEFDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEVSICPMN- 188

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               L +  EM   +S LPEAL N  ++    S+    +   LPRF      + +    ++
Sbjct: 189  -QLLFSAKEMEEAYSKLPEALNNLNQLVSDVSYQFDTNL-KLPRF------NREMPAVDQ 240

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A +GL+        +K      Y++RLD EL++I +M F  YFLIV D +++ +  
Sbjct: 241  LRQLAQSGLD--------SKALREPAYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSR 292

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ AY L IT IDP++  LLFERFLN +R SMPD DID     R E 
Sbjct: 293  GYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNEERYSMPDIDIDLPDIYRSEF 352

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+++YG +  AQI+TF +  AK A+RDV +       ++ +L K I           
Sbjct: 353  LHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKISFRDTLTT--- 409

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+         R  EI++ +EG  R  S HAAGIV+ D  L+  +P+     
Sbjct: 410  VYEKNMSFRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--KAG 467

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + L +   + +D+  I  +D +T 
Sbjct: 468  EDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGIAIDIKSIDLEDSQTL 527

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E +G    L+ ++P   E+++A  SL RPG  D    +  RK GKE
Sbjct: 528  ALFASGKTKGIFQFEQAGAINLLKRIKPAKFEEVVATTSLNRPGASDYTDNFVARKYGKE 587

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  I P++ P+L+ T G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK   EM K  
Sbjct: 588  KVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKDANEMSKMS 647

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E+F+ G+ + G    +A  +F ++ KFA YGFNKSHA AY+ +++Q A+ KTHYP  F  
Sbjct: 648  EQFMEGSRQLGRDPQVAKRLFSMITKFAGYGFNKSHAYAYSSLAFQLAYFKTHYPQIFYD 707

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      + +DA +    +    +N      K+ D +I   L  IKG+    
Sbjct: 708  VMLNYSSSD------YIRDAIENGFSLASLDINRIPYMDKISDGKIVLGLKTIKGLPRDF 761

Query: 850  ARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A  I+E    +  + S+EDF +R+ SK     +L  L+  G  D F  +R +++ +L N+
Sbjct: 762  ALWIIEDRQQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDRFEPNRRKIIGNLSNL 821

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++FA    ++       ++   + + R+  EQ +LG   S HPL
Sbjct: 822  FTFV--------NELGSLFAESSYSW------VEYEDYSQTERYSIEQDLLGVGLSTHPL 867

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                 + +KM  + Y+        +   +   + S +  +T+KG ++ +++  +   + +
Sbjct: 868  ----HLAQKMASRPYQPISELTLNSKATVLVQLESVRIIRTKKGDQMAFLSVFDGVNKLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|300779744|ref|ZP_07089600.1| DNA-directed DNA polymerase [Corynebacterium genitalium ATCC 33030]
 gi|300533854|gb|EFK54913.1| DNA-directed DNA polymerase [Corynebacterium genitalium ATCC 33030]
          Length = 1074

 Score =  737 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/1048 (26%), Positives = 466/1048 (44%), Gaps = 107/1048 (10%)

Query: 7    KSPS--FVHLQVHSSYSLLE---GALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            ++P+  F  L   S+YS L    GA     I+ +       A+ + D +  + A++F++ 
Sbjct: 56   RAPAVPFAELHAVSTYSFLSDTGGASEPEEIVARAQELGLSAVGLLDRDGFYGAVKFAEA 115

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   G+  + G +L +   D       G     +V  + ++    EGY+RL  L++  ++
Sbjct: 116  AAEVGMPTVFGAELSLPRDD-------GGPGDDSVIPLSVIARGPEGYRRLSHLMAAAHM 168

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GD 180
                K  V              L ++    +G         S Q A+ R+    + F  D
Sbjct: 169  ATGEKDKVLYPP----------LPVIADELAG---TCTVLASWQWAD-RIDDLIEYFGPD 214

Query: 181  RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            R+          +    ++ ++ AY H +P + +      + +         ++A    +
Sbjct: 215  RVVREFTATMLPEDADHNEALR-AYPH-VPAIISAAPGAATRQGARLAGAKRSLARRQAM 272

Query: 241  SQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                        ++L++  +++++     + L  TV++A  C+F L + AP LP F   +
Sbjct: 273  GVAYCDLHPMGANWLRSGEQLLAMAPGCADMLAATVDLAAECAFTLNLVAPQLPLFPTPD 332

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR----LDFELNVIARMKFSG 355
              D    E + LR+      E R A           D R+R    ++ ELNVI ++ F G
Sbjct: 333  GHD----EMSWLRHLVRVRGEERYAS-------RPADVRERACTQIEHELNVIEQLGFPG 381

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV D + + ++++I +  GRGS A S   +AL IT+++P+   LLFERFL+PDR   
Sbjct: 382  YFLIVNDIVDFCRESDI-LCQGRGSAANSAVCFALGITNVEPISAQLLFERFLSPDRDGP 440

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD DID    RR+E I+YV   YG +  AQ+    + ++K A+RD  RAL  P    D  
Sbjct: 441  PDIDIDIESGRREEAIQYVYRTYGRDNAAQVANVITYRSKGAVRDAARALGYPQGAADAW 500

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             K +   P+   SL                         +++L G  RH   H+ G+VI 
Sbjct: 501  SKGLSEPPSLVSSL-------------------------AEQLRGQPRHLGIHSGGMVIC 535

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
            DRP++ +VP+      D  V Q++      AGL+KFD LGL  L  L   +D + +    
Sbjct: 536  DRPIADVVPVEWARMEDRSVVQWDKDDCASAGLVKFDLLGLGMLEALHHMIDLVRETTGR 595

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +V L  +P DD   Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGP
Sbjct: 596  EVRLWELPLDDASVYDMLARADAVGVFQVESRAQMNTLPRLKPREFFDLVVEVALIRPGP 655

Query: 655  IDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            I       Y  R++G+E I   HP+++  L  T G+ ++QEQ+MQIA   +G++ +EAD 
Sbjct: 656  IQGGSVHPYLRRRDGREPIEFDHPVLEKSLGRTLGIPLFQEQLMQIAVDAAGFTGAEADS 715

Query: 713  LRRAM-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            LRRAM  K+   +M+  ++RF  G  + NGI   +A  +++ +  FA YGF +SH+ ++A
Sbjct: 716  LRRAMGSKRSPAKMEALRQRFFDGCRETNGIDSAVADRLWQKIVAFAAYGFPESHSQSFA 775

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             + Y +AW K +YP +F    +  +       +   QDAR+  I ++P SVN    + + 
Sbjct: 776  SLVYFSAWFKHYYPAQFCVGLLRAQPMGFYSPQSLIQDARRHGIDVLPVSVNESGCEARC 835

Query: 831  G-------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                    D  I   +  IKG+G   A  I  A   +PF  + D   R D    +    E
Sbjct: 836  VVDAVSGADPAIRVGMNLIKGLGDKAAERIEAA---QPFTGIPDLSRRADLSVEH---AE 889

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            +L  AGALDCFG  R Q L                   + + +           I+    
Sbjct: 890  ALARAGALDCFGVDRRQALWQAGVA-----------ATERDGMLPGLSA-----ISAPAL 933

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
               N+      +    G      P+++ +  L   G+    + ++   G  +R+A ++  
Sbjct: 934  PGMNAFELMAADVAATGVTPGLMPMEMLRGALGATGVVAAADLMSVEDGTRVRIAGVITH 993

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +Q+  T  G  + ++   +         
Sbjct: 994  RQRPVTAGG--VTFMGLEDETGLMNVVI 1019


>gi|325696758|gb|EGD38646.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK160]
          Length = 1069

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/1035 (29%), Positives = 497/1035 (48%), Gaps = 103/1035 (9%)

Query: 3    QYLEKSPSFV-HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            Q + K  + V  L   + YS ++  + +   + K        + + D +NL+ A  F ++
Sbjct: 26   QSMFKEKNVVIQLDTKTVYSFMDSLIPIKKYVQKAKGLGYSHLGMMDVDNLYGAYHFLEE 85

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A +AG+QP++G +L +                     + LL   ++GY+ L++ VS + +
Sbjct: 86   AESAGLQPLLGLELSL-------------IKAEQELHLRLLALDSQGYRNLMK-VSTLKM 131

Query: 122  LDQGKQSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            + Q         +W       +GL ++     G            VA+  L         
Sbjct: 132  MGQ--------KNWEDFQHLFKGLAVIVPAFDG------------VADLDL--------- 162

Query: 181  RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                      G D Y              P +  +   +    D E   +L A+  +  +
Sbjct: 163  ----------GLDFYVGIFPATPKQEFGRPTLPLHTVRYFDTGDLETLQMLQAIRENASL 212

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +     +    +L     +   F +  PE+L N  ++ R   + +      LPRF    
Sbjct: 213  REIG--SLPNHEFLLAPDALAGAFKETFPESLANLEKLVRHVHYDIN-RELKLPRF---- 265

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              + ++    ELR ++ AGL+ R        G   + Y++RLD EL+VI +M F  YFLI
Sbjct: 266  --NRERPAVEELRERSEAGLQKR--------GLTGELYQERLDQELDVIHQMGFDDYFLI 315

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++ +     +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD D
Sbjct: 316  VWDLLRFGRSQGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDID 375

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID     R E IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I
Sbjct: 376  IDIPDVYRPEFIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKI 435

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                +      A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L
Sbjct: 436  RFGDSLTT---AYEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDL 492

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDL 598
            +  +P+      D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V +++
Sbjct: 493  TDQIPL--KYGEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEI 550

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + I  +D ET  L     T GIFQ E  G    L  +QP C E+++A  SL RPG  D I
Sbjct: 551  AEIDLEDAETLKLFAAGQTKGIFQFEQPGAISLLNRVQPVCFEEVVATTSLNRPGASDYI 610

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMG
Sbjct: 611  DNFVKRKHGLEQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMG 670

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK   EM + +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+
Sbjct: 671  KKNAAEMHRMQEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAF 730

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
             K HYP  F    +     +      +  DA  F+ +  P S+N      K  D +I+  
Sbjct: 731  FKAHYPDVFFDVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLG 784

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L  IKG+    A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R
Sbjct: 785  LKNIKGLPRDLAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNR 844

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             ++L +L N+  +A        ++  ++FA    ++++          + + +FE EQ +
Sbjct: 845  QKILANLPNLFVFA--------DELGSLFADTTYSWTEA------QDFSDAEKFELEQSI 890

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +G   S HPL      L K   + +         +  ++ A V + +  +T+KG  + ++
Sbjct: 891  IGVGLSDHPL----VKLAKEADQPFSWISELTENSRAKILAQVQTIKTIRTKKGENMAFL 946

Query: 1019 TFSEPAKEYEANFFP 1033
              S+  K+ +   FP
Sbjct: 947  QVSDTKKKLDVTLFP 961


>gi|37679476|ref|NP_934085.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016]
 gi|71151843|sp|Q7MLY4|DNAE2_VIBVY RecName: Full=Error-prone DNA polymerase
 gi|37198220|dbj|BAC94056.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016]
          Length = 1024

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/1035 (23%), Positives = 430/1035 (41%), Gaps = 81/1035 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S L GA     ++ +       ++AITD  +L   +          +   
Sbjct: 3    YAELFCQSNFSFLTGASHPEELIVQANFLGYHSLAITDECSLAGIVRAHSAIKQHQLSVK 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
                    +               T    VLL    E Y  L  +++      + K   +
Sbjct: 63   QIVGSFFKLN--------------TECQFVLLCPNREAYAELCRIITNARRRCE-KGQYQ 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +    +  +    LI L  G +               E+      +    RL++ LQRH 
Sbjct: 108  LSQWDVMSLKHCLLIWLPTGQTSD-------------EQWATWLSRYQQSRLWLGLQRHL 154

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRV 248
               D +       LA   +LP+ A    L    E       L A+ H   V Q   +   
Sbjct: 155  HHDDEHYLHHCQTLANQFDLPITACGGVLMHRPERLPLQHTLTAIRHGCTVEQLGTQLLT 214

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +  L++  ++  +F   P+ L  ++ IA  CSF L       P  +  +        +
Sbjct: 215  NAEQSLRSEKKLRKLFK--PQWLAESLYIASLCSFDLDSLRYEYPSELIPDG----YTPD 268

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L +    G ++R  +G            Q +  EL +I   K+  +FL + D + +AK
Sbjct: 269  SYLEHLVEQGKKLRFPEGV------PDAIEQTIQKELALIKEQKYPFFFLTIHDIVMFAK 322

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I    GRGS A SV  Y L IT +DP + ++LFERF++ +R   PD D+DF  +RR+
Sbjct: 323  QQGILY-QGRGSAANSVVCYCLQITSVDPRQIAVLFERFISKERDEPPDIDVDFEHERRE 381

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  KYG +R A   T  S + K+A+R VG+AL +  +Q+D   K I N       
Sbjct: 382  EVIQYIYQKYGRQRAALAATVISYRFKSAVRQVGKALGIEETQLDFFLKNI-NRRDRQAG 440

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             Q    +   R   L        +++ +++ G  RH S H  G VI   PL +LVP+   
Sbjct: 441  WQVQLVELGLRPDSLKG---QHFIQLVEEIIGFPRHLSQHVGGFVISSGPLYELVPVENA 497

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV---DLSLIPFDD 605
               +  + Q++   +E   L+K D L L  LT ++K    + Q   +           DD
Sbjct: 498  AMPERTIIQWDKDDLESLKLLKVDVLSLGMLTAIRKCFRSIEQHHQQRLSIADITRRQDD 557

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
               Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI  D +  +  
Sbjct: 558  QAVYKMIQKADTIGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGPIQGDMVHPFLK 617

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R++G+E I      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM   K  
Sbjct: 618  RRDGEEPISYPSVHVQEVLERTLGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMAAWKKN 677

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              + K K + I+G  + G     A  IFE +  F +YGF +SH+A++AV++Y +AW+K +
Sbjct: 678  GHVFKFKTKLINGMLERGYELDFAERIFEQICGFGEYGFPESHSASFAVLAYCSAWLKHY 737

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYY 837
            YP EF  A +  +        +  QDA++  I ++P  VN    + ++     G+  I  
Sbjct: 738  YPAEFYTALLNSQPMGFYSPSQLVQDAKRHGIAVLPICVNFSNPEHQLVRLTSGELAIRL 797

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
                IKG+       ++     + +  + +    +   K  + +  +  F    D    +
Sbjct: 798  GFNLIKGLSHEGITRLLTHRPAQGYQCISEVKQILRQAKDIQSLASANAFYQLADNRYLA 857

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R Q++ +LD +                 +F       ++   L K S   + +    +  
Sbjct: 858  RWQVMDNLDEL----------------PLFQTLPSISNN--PLPKPSDYQNVL---EDYA 896

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G   + HP+ + +            +       + + +  +V  KQ   T  G  + +
Sbjct: 897  ATGLSLAEHPVAMLEKAGGLTRFTRANQLNQCSHRSLVTVIGLVTGKQSPGTAAG--VTF 954

Query: 1018 VTFSEPAKEYEANFF 1032
             T  +         +
Sbjct: 955  FTLEDDTGNINVVVW 969


>gi|156975141|ref|YP_001446048.1| DNA polymerase III alpha chain [Vibrio harveyi ATCC BAA-1116]
 gi|171769810|sp|A7MUN4|DNAE2_VIBHB RecName: Full=Error-prone DNA polymerase
 gi|156526735|gb|ABU71821.1| hypothetical protein VIBHAR_02868 [Vibrio harveyi ATCC BAA-1116]
          Length = 1024

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/1040 (24%), Positives = 448/1040 (43%), Gaps = 89/1040 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--KACAAGI 67
            S+  L   S++S L GA     ++ + A  +  AIAITD  ++   ++     +     I
Sbjct: 2    SYAELFCQSNFSFLTGASHAEELVLQAAFYRYQAIAITDECSVAGVVKAHATIEQHKLDI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G    ++ +                  +VLL    + Y  L  +++      +   
Sbjct: 62   KQIVGSMFWLNDE----------------CQVVLLCPCRKAYAELCRIITNARRRSE--- 102

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                 LS    +      +L           +     +         ++    RL+V +Q
Sbjct: 103  KGSYQLSEWDLMSVRHCFVL-----------WLPTHQESDHYWGRWLQQHHAHRLWVAIQ 151

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH  G D    +    LA   +LP+ A    L  + E      VL AV H   V +    
Sbjct: 152  RHLGGDDDAYTTHCELLANEFQLPIAACGGVLMHAVERLPLQHVLTAVKHGCSVDKLGFS 211

Query: 247  RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R++  +  L+  +++  I+    + LE +  IA  C F L       P  +         
Sbjct: 212  RLSNAERALRPLNKLSRIYK--SKWLEESTHIADLCEFKLSDLKYEYPTELIPNG----Y 265

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     G ++R  +G  A      D  Q ++ EL +I  +++  YFL + D + 
Sbjct: 266  TPTSYLRMLVERGKKLRFPEGIPA------DIHQTIENELALIEELEYHYYFLTIHDIVM 319

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK+  I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +
Sbjct: 320  FAKQQGILY-QGRGSAANSVVCYCLEITAVDPRQISVLFERFISREREEPPDIDVDFEHE 378

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG ER A   T  S + K+A+R+VG+AL +  +Q+D   K + N    
Sbjct: 379  RREEVIQYIYKKYGRERAALAATVISYRFKSAVREVGKALGIEETQLDFFIKNV-NRRDR 437

Query: 486  PVSLQAIADDSRFREARLADPSVD--RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                QA     +  E  L   S+   + +++  ++ G  RH S H  G VI   PL +LV
Sbjct: 438  TQGWQA-----QIIELGLQPESLKGQQFIQLVNEITGFPRHLSQHVGGFVISSGPLYELV 492

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA---QRGVKVDLSL 600
            P+      D  + Q++   +E   L+K D L L  L  ++K    +    QR + +    
Sbjct: 493  PVENASMEDRTIIQWDKDDLESLKLLKVDVLALGMLNAIRKCFQLVEKHHQRSLSIAEIT 552

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
               DD   Y ++    T+G+FQ+ES      L  ++P    D++  +++ RPGPI  D +
Sbjct: 553  RLQDDPHVYRMIQKADTVGVFQIESRAQMSMLPRLKPARYYDLVVQIAIARPGPIQGDMV 612

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  R+NG+E I      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM 
Sbjct: 613  HPFLKRRNGEEPISYPSEEVKSVLERTMGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMA 672

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K   ++ K K + I G  + G     A  IF+ +  F +YGF +SH+A++AV++Y +A
Sbjct: 673  AWKKNGDLAKFKPKLIDGMRERGYDLEFAERIFDQICGFGEYGFPESHSASFAVLAYCSA 732

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GD 832
            W+K +YP EF  A +  +        +  QDAR+  ++++P  +N       +     G 
Sbjct: 733  WLKFYYPAEFYTALLNSQPMGFYSPSQLIQDARRHGVEVLPVCINHSSYQHHLVQRPNGR 792

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              +      +KG    +A  ++E      + ++++    V     NRR +E L  A A  
Sbjct: 793  LGVQLGFRLVKGFNQESASRLVERRPSTGYRAIQE----VKQILRNRRDIELLASADAFQ 848

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                +R             A+W   +  +    +F H +   ++          +     
Sbjct: 849  ILSGNRY-----------NARWAAMDSLSD-LPLFNHIEEPMANYQAQP-----SEYENL 891

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +    G   S HP+ + +   +       ++ V     + + +  +V  +Q   T  G
Sbjct: 892  IEDYASTGLSLSRHPITLLEEAGKLPRFTRMKQLVEKEHNSLVTVIGVVTGRQSPGTAAG 951

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
              + + T  +         +
Sbjct: 952  --VTFFTLEDDTGNINVVVW 969


>gi|325687799|gb|EGD29819.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK72]
          Length = 1069

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/1035 (28%), Positives = 494/1035 (47%), Gaps = 103/1035 (9%)

Query: 3    QYLEKSPSFV-HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            Q + K  + V  L   + YS ++  + +   + K        + + D +NL+ A  F ++
Sbjct: 26   QSMFKEKNVVIQLDTKTVYSFMDSLIPIKKYVQKAKELGYSHLGMMDVDNLYGAYHFLEE 85

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A +AG+QP++G              +           + LL   ++GY+ L++ VS + +
Sbjct: 86   AESAGLQPLLGL-------------DLSLIKAEQELHLRLLALDSQGYRNLMK-VSTLKM 131

Query: 122  LDQGKQSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            + Q         +W       +G  ++     G            VA+  L         
Sbjct: 132  MGQ--------KNWEDFQHLFKGFAVIVPAFDG------------VADLDL--------- 162

Query: 181  RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                      G D Y              P +  +   +    D E   +L A+  +  +
Sbjct: 163  ----------GLDFYVGVFPATPKQEFGRPTLPLHTVRYFDTGDLETLQMLRAIRENASL 212

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +     +    +L     +   F +  PE+L N  ++ R   + +      LPRF    
Sbjct: 213  REIG--SLPNHEFLLAPDALAGAFKETFPESLANLEKLVRDVHYDIN-RELKLPRF---- 265

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              + ++    EL+ ++ AGL+ R        G   + Y++RLD EL VI +M F  YFLI
Sbjct: 266  --NRERPAVEELQERSEAGLKKR--------GLTGKLYQERLDQELAVIHQMGFDDYFLI 315

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++ +     +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD D
Sbjct: 316  VWDLLRFGRSQGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDID 375

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID     R E IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I
Sbjct: 376  IDIPDVYRPEFIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKI 435

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                +      A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L
Sbjct: 436  RFGDSLT---SAYEKNMGFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDL 492

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDL 598
            +  +P+      D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V +++
Sbjct: 493  TDQIPL--KYGEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEI 550

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + I  +D +T  L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I
Sbjct: 551  AEIDLEDADTLKLFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYI 610

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMG
Sbjct: 611  DNFVKRKHGLEQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMG 670

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK   EM + +E F++GA K G S+T A  +F ++ KFA YGFN+SHA AY+ +++Q A+
Sbjct: 671  KKSAAEMHRMQEDFVAGALKLGHSETKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAY 730

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
             K HYP  F    +     +      +  DA  F+ +  P S+N      K  D +I+  
Sbjct: 731  FKAHYPDVFFDVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLG 784

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L  IKG+    A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R
Sbjct: 785  LKNIKGLPRDLAYWIIEERQNATFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNR 844

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             ++L +L N+  +A        ++  ++FA    ++++          + + +FE EQ +
Sbjct: 845  QKILANLPNLFVFA--------DELGSLFADTTYSWTEA------QDFSDAEKFELEQSI 890

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +G   S HPL      L K   + +         +  R+ A V S +  +T+KG  + ++
Sbjct: 891  IGVGLSDHPL----VKLAKEADQPFSWISDLTENSRARILAEVQSIKTIRTKKGENMAFL 946

Query: 1019 TFSEPAKEYEANFFP 1033
              S+  K+ +   FP
Sbjct: 947  QVSDTKKKLDVTLFP 961


>gi|312278519|gb|ADQ63176.1| DNA polymeraDNA polymerase III alphase III alpha subunit
            [Streptococcus thermophilus ND03]
          Length = 1036

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/1025 (28%), Positives = 491/1025 (47%), Gaps = 100/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS ++  + LN  + +       +I + D +NL++A  F+Q A   G++P+
Sbjct: 2    FAQLDTKSVYSFMDSVVDLNTYVKRAKELGYQSIGLMDRDNLYAAYHFAQLAIRNGLRPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + ++  +                    LL    +GY+ L++L + +     G++   
Sbjct: 62   IGTEANLFYEGRK-------------IPFRLLAKNNQGYKNLMKLATELSS---GQREFT 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                +L +I    LI+ +                         +                
Sbjct: 106  YFSDYLNDIA---LILPS-----------------------EDW----------EPGMSL 129

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G + +   +        + P+V  +   +    D      L A++ +  +S+     +  
Sbjct: 130  GSEVFIGVRPEDAGKEFDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEVSICPMN- 188

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               L +  EM   +S LPEAL N  ++    S+    +   LPRF      + +    ++
Sbjct: 189  -QLLFSAKEMEEAYSKLPEALNNLNQLVSDVSYQFDTNL-KLPRF------NREMPAVDQ 240

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A +GL+        +K      Y++RLD EL++I +M F  YFLIV D +++ +  
Sbjct: 241  LRQLAQSGLD--------SKALREPAYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSR 292

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ AY L IT IDP++  LLFERFLN +R SMPD DID     R E 
Sbjct: 293  GYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNEERYSMPDIDIDLPDIYRGEF 352

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+++YG +  AQI+TF +  AK A+RDV +       ++ +L K I           
Sbjct: 353  LHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKISFRDTLTT--- 409

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+         R  EI++ +EG  R  S HAAGIV+ D  L+  +P+     
Sbjct: 410  VYEKNMSFRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--KAG 467

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + L +   + +D+  I  +D +T 
Sbjct: 468  EDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGIAIDIKSIDLEDSQTL 527

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E +G    L+ ++P   E+++A  SL RPG  D    +  RK GKE
Sbjct: 528  ALFASGKTKGIFQFEQAGAINLLKRIKPAKFEEVVATTSLNRPGASDYTDNFVARKYGKE 587

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  I P++ P+L+ T G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK   EM K  
Sbjct: 588  KVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKDANEMSKMS 647

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E+F+ G+ + G    +A  +F ++ KFA YGFNKSHA AY+ +++Q A+ KTHYP  F  
Sbjct: 648  EQFMEGSRQLGRDPQVAKRLFSMITKFAGYGFNKSHAYAYSALAFQLAYFKTHYPQIFYD 707

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      + +DA +    +    +N      K+ D +I   L  IKG+    
Sbjct: 708  VMLNYSSSD------YIRDAIENGFSLASLDINRIPYMDKISDGKIVLGLKTIKGLPRDF 761

Query: 850  ARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A  I+E    +  + S+EDF +R+ SK     +L  L+  G  D F  +R +++ +L N+
Sbjct: 762  ALWIIEDRQQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDRFEPNRRKIIGNLSNL 821

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++FA    ++       ++   + + R+  EQ +LG   S HPL
Sbjct: 822  FTFV--------NELGSLFAESSYSW------VEYEDYSQTERYSIEQDLLGIGLSTHPL 867

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                 + +KM  + Y+        +   +   + S +  +T+KG ++ +++  +   + +
Sbjct: 868  ----HLAQKMASRPYQPISELTLNSKATVLVQLESVRIIRTKKGDQMAFLSVFDGVNKLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|237784951|ref|YP_002905656.1| DNA polymerase III subunit alpha [Corynebacterium kroppenstedtii DSM
            44385]
 gi|237757863|gb|ACR17113.1| DNA polymerase III, alpha subunit [Corynebacterium kroppenstedtii DSM
            44385]
          Length = 1039

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/1040 (27%), Positives = 463/1040 (44%), Gaps = 96/1040 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F  L   S+YS L GA S   ++D  A     A+A+ D + ++ A++F++ A  +GI  
Sbjct: 20   PFAELHACSAYSFLRGASSPAEMVDSAAELGLEALALVDRDGVYGAVQFAEAAADSGIAT 79

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G +L +    +       K        + +L   AEGY+RL  ++S  ++    K  V
Sbjct: 80   IFGAELTLTPSVSSSQPASSKNER----ILTVLCRGAEGYRRLSRVISDAHMCTGEKNEV 135

Query: 130  RIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            R   L  L   G +  I+L   S  P                L    + F  R+ V L R
Sbjct: 136  RYPSLDELARRGGDHWIILADYSWTP---------------YLDELVEHFP-RVVVELDR 179

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D   R  + ++ A    L  V ++ +     +         A+ +   V   +   
Sbjct: 180  LLVPDDADRHEEQLEAAEQLGLAAVYSSAATAARPKSGRLAGAKTALRYRKDVEDAEPYT 239

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  YL++ +EM    +D PE   NT+ +AR C+F L   AP LP +   E       
Sbjct: 240  HPIGGTYLRSGAEMFD--ADYPELTANTLAVARDCAFTLTTIAPELPDWPVPEG----YT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E   L +       VR                 ++D ELNVI  + F GYFLIV D + +
Sbjct: 294  EITWLEHMVEKRGAVRYGSREDNHAA-----WAQIDHELNVIGGLNFPGYFLIVTDLVDF 348

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             ++ NI +  GRGS A S   +AL IT++DP+   LLFERFL+P+R   PD D+D    R
Sbjct: 349  CRRANI-LAQGRGSSANSAVCFALGITNVDPVAADLLFERFLSPEREGPPDIDLDIESGR 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y  NKYG E  AQ+    + + + ALRD  RAL     ++D   + + + P   
Sbjct: 408  REEVIQYCYNKYGRENAAQVANVITYRRRGALRDAARALGYSSGRIDAWVRGLDDVPNDV 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            V+L                         + +L G  RH S H+ G+VI DRP++ +VP+ 
Sbjct: 468  VTL-------------------------ADQLRGQPRHLSIHSGGMVICDRPIADVVPVE 502

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 +  + Q++       GL+KFD LGL  L  +  ++D +   RG  V+L  +  DD
Sbjct: 503  WARMENRSIIQWDKDDAASGGLVKFDLLGLGMLEAIHHAIDQVRDHRGRTVNLWQLGLDD 562

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
             E Y +L     +G+FQ+ES     AL  ++P    D++  V+L RPGPI       Y  
Sbjct: 563  PEVYAMLARADAVGVFQVESRAQMSALPRLKPREFYDLVVQVALIRPGPIQGGSVHPYIR 622

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R+NG+E +   HP +   L +T GV ++QEQVM++A   +G++  EAD LRRAM  K+  
Sbjct: 623  RRNGEEAVTFDHPCLKDALAKTLGVPLFQEQVMRVAVDAAGFTPVEADALRRAMGAKRSA 682

Query: 723  EEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            ++M++  ERF  G   K+G+ +     +++ +  FA YGF +SHA ++A I Y +AW K 
Sbjct: 683  KKMEQLHERFARGCREKHGMDEATITTLWKKIIAFAAYGFPESHAQSFASIVYFSAWFKR 742

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---------GD 832
            +YP EF  A +  +       +    DAR+  ++I+P  VN   V+              
Sbjct: 743  YYPAEFCVALLRAQPMGFYSPQSLIADARRHGVEILPIDVNHSDVEANAIDNPDLEPGAP 802

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            N +   L A+KG+G   A+ +++A AD  PF  + D   R     ++   +E+L  AGAL
Sbjct: 803  NSLRLGLDAVKGLGARGAKAVVQARADGGPFTRIADLSRRA---GISVSQVEALATAGAL 859

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
               G  R + L +                ++   +          +I++      ++   
Sbjct: 860  RSMGIDRREGLWAAGIA-----------AHERPGMLPGMS-----EISIPSLPGMSAFEL 903

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +    G     HP+++ +  L   GI    +  +      + +A  V  +Q+  T  
Sbjct: 904  AAADIASTGITADIHPVELLRKHLDNAGIISIRQLASCEDSTRVTVAGTVTHRQRPGTAG 963

Query: 1012 GSRIGWVTFSEPAKEYEANF 1031
            G  + ++   +         
Sbjct: 964  G--VVFLGLEDETGLANITV 981


>gi|320333087|ref|YP_004169798.1| DNA polymerase III subunit alpha [Deinococcus maricopensis DSM 21211]
 gi|319754376|gb|ADV66133.1| DNA polymerase III, alpha subunit [Deinococcus maricopensis DSM
            21211]
          Length = 1332

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/728 (43%), Positives = 441/728 (60%), Gaps = 22/728 (3%)

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
             + A A   HA    +R ++EL+VI  M F  YFLIVAD+I WAK + I VGPGRGSGAG
Sbjct: 459  HESACAHHRHALVLLRRAEYELSVINNMGFPDYFLIVADYINWAKDHGISVGPGRGSGAG 518

Query: 384  SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            S+ AYA+ IT++DPL F LLFERFLNPDR+SMPDFDIDF   RR EVI YVQ KYG ++V
Sbjct: 519  SLVAYAIRITNLDPLEFELLFERFLNPDRISMPDFDIDFNDARRGEVITYVQQKYGDDKV 578

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREAR 502
            AQI TFG++ +KA L+DV R + + Y++VD++ KLIP       SL QA       ++  
Sbjct: 579  AQIATFGTMASKACLKDVARVMGLEYAKVDKVSKLIPIKFGKSYSLEQARESVPDIQQML 638

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
              D  +    E +QKLEGL RHAS HAAG+VIG   L+ LVP+ RD   +  V Q++MK 
Sbjct: 639  DEDAQLREAYEFAQKLEGLTRHASVHAAGVVIGKTQLTDLVPVMRDTSGEGMVCQYDMKA 698

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            +E  GLIK DFLGL+TL+ L ++   + + +G++VD   IPFDD  T+ LL+   T G+F
Sbjct: 699  VEDIGLIKMDFLGLRTLSFLDEAKRIMRESKGIEVDFDAIPFDDEATFDLLSRGDTKGVF 758

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH------ 675
            QLE +G+  A   ++P  + DIIAL +LYRPGP++NI  Y  R +G E++  +       
Sbjct: 759  QLEGAGIADASRRLKPRRLADIIALSALYRPGPMENIPTYVRRHHGLEQVDYVRDGFPNS 818

Query: 676  -PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
               ++ +L ET G+ +YQEQ+MQIA  ++G+SL  AD+LRRAMGKK  EEM +Q++ F+ 
Sbjct: 819  AQWLEKILAETYGIPVYQEQIMQIASEVAGFSLGGADLLRRAMGKKDAEEMKRQRQIFVD 878

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            GA  NG+ K     +F+LL  FA+YGFNKSH+AAY VI+YQTAW+K ++PVEF+AA +T+
Sbjct: 879  GAEGNGVPKDEGNKLFDLLDAFANYGFNKSHSAAYGVITYQTAWLKANHPVEFMAALLTV 938

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
            E  + +K+ ++  DAR+  + ++PP +N    DFKV    IY+ L AIKG+G      I+
Sbjct: 939  ERRDSDKVAEYASDARKMGVTVLPPDINRSGADFKVVGQDIYFGLYAIKGLGENAVLRIL 998

Query: 855  -EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
             E      F SL DFC+R+D+K  NR+ LESL+ +GA D FG  R QLL SL++   +AQ
Sbjct: 999  DERERGGRFRSLADFCARIDNKTCNRKGLESLIKSGAFDAFGE-RQQLLSSLEDAIAWAQ 1057

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
                   +  + +F   +     K+        +   +   E+  LG Y SGHPL+ ++ 
Sbjct: 1058 GAAAMLNSGMDALFGMAETAPEPKLRA-NVEPLSELAKLALEKEALGLYISGHPLEQHEG 1116

Query: 974  ILRKMGIKGYEES------VATIRGNN---IRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             LR+       +            G N     LA M+    +K T+ G  +     ++  
Sbjct: 1117 -LREAASTRIADLDDWFFTQPQTGGRNRVKAVLAGMIEGVVKKPTKSGGMMARFNLADET 1175

Query: 1025 KEYEANFF 1032
               E   F
Sbjct: 1176 ATIELVAF 1183



 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 90/343 (26%), Positives = 152/343 (44%), Gaps = 15/343 (4%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAA---DQ-QPAIAITDTNNLFSALEFSQKAC 63
              F HL  H+ YSLL+GA  L ++L        D   PA+A+TD  N+  A+ F   A 
Sbjct: 21  PKRFAHLHQHTQYSLLDGAAKLKDLLKWAKEVTPDGCTPALAMTDHGNMHGAVHFYNYAT 80

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
             G++PIIG +  +      +    +G+     +  + LL    EGYQ L  L SR Y  
Sbjct: 81  GMGVKPIIGYEAYVVPGVGTRRERTRGQDGEKGIFHLTLLARDFEGYQNLCRLSSRGYTE 140

Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                  RI    LQE   +G+I  +G     + +         A++RL+ ++ LFG+  
Sbjct: 141 G-YYYKPRIDHELLQE-HHKGVIAFSGCLGSEVQQLLLQGREADAKQRLMWYRDLFGENY 198

Query: 183 YVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           ++ +Q H   ++ R + +++  A    + +VATN+  ++ + D  AH+ L+A+     ++
Sbjct: 199 FIEIQDHGLPEQKRNNPILRAWAQELGIGMVATNDGHYVKKSDATAHETLLAIQTKATLA 258

Query: 242 QKDRPRVTPDHYL-KNRSEMVSIF--SDLPEA-LENTVEIARRCSFILQVHAPILPRFIE 297
            ++R +   D +  KN  EM +    S+  E   +NT  IA  C+  L V    + +   
Sbjct: 259 DENRFKFPCDEFYVKNLEEMQAALPVSEWGEEPFDNTAMIADLCNVDLPVGKKRVYQMPA 318

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
               +  +    ELR +  AG   R           A  Y +R
Sbjct: 319 LPIPE-GRTMAEELRVQTYAGSLKRYPHHVTEGLLRA--YAKR 358


>gi|73538350|ref|YP_298717.1| error-prone DNA polymerase [Ralstonia eutropha JMP134]
 gi|72121687|gb|AAZ63873.1| DNA polymerase III, alpha subunit [Ralstonia eutropha JMP134]
          Length = 1111

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/1087 (24%), Positives = 466/1087 (42%), Gaps = 92/1087 (8%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            L+ +L   P +  L   S+++ L GA     ++++        IA+TD  ++        
Sbjct: 9    LSAWLPTLPDYAELHCISNFTFLTGASHPVELIERAFQLGYRGIALTDECSVAGTARAHD 68

Query: 61   K---------------------ACAAGIQPIIGCQLDIDM------QDNLKMTNQGKTPF 93
                                  A   G   ++                   +T    T  
Sbjct: 69   AIKTLRQRLTDAVKRCEADATEAQDEGELNVLKAHAAAADAFRLLIGSRFSLTAPSGTDE 128

Query: 94   PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL--QEIGTEGLIMLTGGS 151
                 ++L+    EG+  L EL++   +  Q K S  +    L   E   + L  + G  
Sbjct: 129  RPPLRLILIAQHREGFGNLCELITLGRMRAQ-KGSYLLHPEDLSAPEEEQKHLRGMPGCL 187

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELP 210
            +  +             ++    ++ FG+R ++ L++ +G+ D    +++  ++    +P
Sbjct: 188  ALLVPDYC--PDPAQLLEQAQWCREAFGERAWIALEQLQGHADALHRARLESVSAQAGVP 245

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPE 269
            LVA               DVL A+     + +         + +L+ R  +  ++    E
Sbjct: 246  LVAAGAVTMHVRSRKPLSDVLTAIRLGKPLPECGMALAPNAEQHLRMRQVLSRLYPR--E 303

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            AL  T++IA  C F L       P  +  + +       + LR +  AG  +R   G   
Sbjct: 304  ALAQTLKIAGLCDFSLDTLRYEYPEELVPKGE----TPISYLRKEVEAGKRMRFPHGLKP 359

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                  ++ ++L+ EL +I   ++  +FL V D +++A++  I +  GRGS A S+  Y 
Sbjct: 360  ------EWEKQLEGELELIEEKQYEHFFLTVHDIVRFARQEGI-LCQGRGSAANSLVCYC 412

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L +T++ P + +LLF RFL+ +R   PD D+DF   RR+EVI+Y+  KYG +R A   + 
Sbjct: 413  LYVTEVSPEQANLLFGRFLSRERDEPPDIDVDFEHQRREEVIQYIYRKYGRDRTALAASL 472

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
             + ++++ALRDVGRAL +  S V+++ K      +    L  I      RE+    P+V 
Sbjct: 473  ITYRSRSALRDVGRALGIDASVVEQVVKGQAWWESGQGFLDRIGRYGLDRES----PAVQ 528

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            +   ++ +L G  RH S H  G V+    LS+LVP+     +D  V Q++   +E  GL+
Sbjct: 529  QWASLTTQLHGFPRHLSQHVGGFVMARGKLSRLVPIENAAMADRSVIQWDKDDLESLGLL 588

Query: 570  KFDFLGLKTLTLLQKSLDFL-------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            K D L L  L+ ++++L  +       A+ GV   +  +P +D  TY ++    T+G+FQ
Sbjct: 589  KVDVLALGMLSAIRRALAMIPNPDESLAEAGVPARMEDVPKEDKATYAMICRADTIGVFQ 648

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGK----EKIVSIHP 676
            +ES   +  L  +QP    D++  V++ RPGPI   +   Y  R+       +  V  + 
Sbjct: 649  IESRAQQSMLPRLQPRVYYDLVVEVAIVRPGPIQGGMVHPYLKRREAFRRTGKPPVYFND 708

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISG 735
            +I  +L  T GV I+QEQVMQ+A   +G++  +AD LRR+M   + + ++ + +E  I  
Sbjct: 709  VIKKVLGRTLGVPIFQEQVMQLAIDAAGFTAGQADKLRRSMAAWRRRGDLRQHQEALIRA 768

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
             ++    ++ A+ I + +  F +YGF +SHAA++A + Y +AW+K H+P  FL A +  +
Sbjct: 769  LTERKYPESFALAICKQIEGFGEYGFPESHAASFAKLVYISAWLKCHHPSAFLCALLNSQ 828

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---------GDNRIYYSLAAIKGVG 846
                    +  QDA++  + ++P  V     D  +         G   +   L  +KG+ 
Sbjct: 829  PMGFYSPSQLVQDAQRHGVVVLPVDVTVSNWDSTLEPAPGQTGAGKPPVRMGLGRVKGMR 888

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I  A A +PFDS+ED   R    + +  VL +            +R Q      
Sbjct: 889  EAAALRIEAARAQRPFDSVEDLALRASLDRHDIDVLAAADAL---AALAGNRRQARW--- 942

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                  Q         H ++  HE      ++TL              +    G     H
Sbjct: 943  ------QASAAALQVAHRDLL-HEAPLIERQLTLP---APRLGEEVAADYASTGLSLKSH 992

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            PL + +  L  M     E+      G  +R   +V  +Q+  T  G+   + T  +    
Sbjct: 993  PLALLRAKLEAMDYATAEQLSRCRNGRRVRTCGIVTVRQRPATASGT--IFATIEDETGT 1050

Query: 1027 YEANFFP 1033
                F+P
Sbjct: 1051 VNLIFWP 1057


>gi|251782507|ref|YP_002996809.1| DNA polymerase III DnaE [Streptococcus dysgalactiae subsp.
            equisimilis GGS_124]
 gi|242391136|dbj|BAH81595.1| DNA polymerase III alpha subunit [Streptococcus dysgalactiae subsp.
            equisimilis GGS_124]
 gi|323127393|gb|ADX24690.1| DNA polymerase III DnaE [Streptococcus dysgalactiae subsp.
            equisimilis ATCC 12394]
          Length = 1036

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/1026 (29%), Positives = 510/1026 (49%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L++  ++        I I D +NL+ A  F +     G++P+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLSHYFEQAKQLGYQTIGIMDRDNLYGAYHFIRGCQKHGLRPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++++  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEVVYQEQQVL-------------LNLIAKNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EGL ++                            +++ D L V    + 
Sbjct: 102  LQMDYLCQ-HLEGLAVIIP-------------------------NRVWTDTLAVPFDYYI 135

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D+Y +   +  +    +PL       + +++D E   +L A+  +  +++   P V  
Sbjct: 136  GVDQYTDFSHMD-SKKQFIPL---RTVRYFAQDDMETLHMLHAIRDNLSLAET--PVVES 189

Query: 251  DHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D  L +  ++ + + +  P+AL+N  ++     +        LPRF      +  K  + 
Sbjct: 190  DQELGDCQQLTAYYQAHCPQALQNLEDLVSGIHYDFDTDL-KLPRF------NRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL+    AGL        +AKG   + Y+ RL  EL VI+ M F  YFLIV D +++ + 
Sbjct: 243  ELQELTQAGL--------VAKGLWQEPYQTRLAHELTVISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP+R  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALDITGIDPIRHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                 +  FR+   +     +   I+Q++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 412  TVYEKNISFRQTINSRVEFQKAFTIAQRIEGNPRQTSIHAAGIVMSDDNLTNHIPL--KA 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              ++ VTQ++   +E  GL+K DFLGL+ LT +QK  + +A+     +D++ I  +D +T
Sbjct: 470  GDEMMVTQYDANAVEANGLLKMDFLGLRNLTFVQKMQEKVAKEYGQHIDIAAIDLEDPKT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D  V +  R+ G+
Sbjct: 530  LALFAKGDTRGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTVNFIKRRQGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ  +G++L +AD+LRRAM KK   EM K 
Sbjct: 590  EKIDLIDPVIAPILESTYGIMLYQEQVMQIAQAYAGFTLGKADLLRRAMSKKNLLEMQKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F++GA + G S+  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  EEAFVAGAKQLGRSEETAKLLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M     +      +  DA + N Q+   ++N+     K+  N IY  L  IKG+   
Sbjct: 710  DIMMNYSSSD------YITDALESNFQVAQVTINSIPYTDKIESNSIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E    +PF S+EDF +RV  K      LE L+  G  DCF  +R ++L++L+ +
Sbjct: 764  FAYWIIE---QRPFSSVEDFLTRVPEKYQKIAFLEPLIKIGLFDCFDPNRKKILENLEGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++FA     + D          +++ ++  EQ ++G   S HPL
Sbjct: 821  LVFV--------NELGSLFADSSFNWGDT------EDYSTTEKYSFEQELIGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++     +   V S +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  ----IDIAEKSTQAFTPISQLVKDKEATILVQVDSIRTIRTKTSGQQMAFLSVNDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|325689997|gb|EGD32001.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK115]
          Length = 1069

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/1035 (29%), Positives = 498/1035 (48%), Gaps = 103/1035 (9%)

Query: 3    QYLEKSPSFV-HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            Q + K  + V  L   + YS ++  + +   + K        + + D +NL+ A  F ++
Sbjct: 26   QSMFKEKNVVIQLDTKTVYSFMDSLIPIKKYVQKAKDLGYSHLGMMDADNLYGAYHFLEE 85

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A +AG+QP++G         +L +    K        + LL   ++GY+ L++ VS + +
Sbjct: 86   AESAGLQPLLGL--------DLSLIKAEKE-----LHLRLLALDSQGYRNLMK-VSTLKM 131

Query: 122  LDQGKQSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            + Q         +W       +GL ++    +G            VA+  L         
Sbjct: 132  MGQ--------KNWEDFQHLFKGLAVIVPAFNG------------VADLDL--------- 162

Query: 181  RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                      G D Y              P +  +   +    D E   +L A+  +  +
Sbjct: 163  ----------GLDFYVGVFPATPKQEFSRPTLPLHTVRYFDTGDLETLQMLRAIRENASL 212

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +     +    +L     +   F +  PE+L N  ++ R   + +      LPRF    
Sbjct: 213  REIG--SLPNHEFLLAPDALAGAFKETFPESLANLEKLVRHVHYDIN-RELKLPRF---- 265

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              + ++    ELR ++ AGL+ R        G   + Y++RLD EL VI +M F  YFLI
Sbjct: 266  --NRERPAVEELRERSEAGLKKR--------GLTGKLYQERLDQELAVIHQMGFDDYFLI 315

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++ +     +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD D
Sbjct: 316  VWDLLRFGRSQGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDID 375

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID     R E IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I
Sbjct: 376  IDIPDVYRPEFIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKI 435

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                +      A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L
Sbjct: 436  RFGDSLT---SAYEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDSDL 492

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDL 598
            +  +P+      D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V +++
Sbjct: 493  TDQIPL--KYGEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEI 550

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + I  +D +T  L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I
Sbjct: 551  ADIDLEDADTLKLFAAGQTKGIFQFEQPGAISLLKRVQPICFEEVVATTSLNRPGASDYI 610

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMG
Sbjct: 611  DNFVKRKHGLEQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMG 670

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK   EM + +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+
Sbjct: 671  KKSAAEMHRMQEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAY 730

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
             K HYP  F    +     +      +  DA  F+ +  P S+N      K  D +I+  
Sbjct: 731  FKAHYPDVFFDVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLG 784

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L  IKG+    A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R
Sbjct: 785  LKNIKGLPRDLAYWIIEERQNAVFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNR 844

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             ++L +L N+  +A        ++  ++FA    ++++          + + +FE EQ +
Sbjct: 845  QKILANLPNLFVFA--------DELGSLFADTTYSWTEA------QDFSDTEKFELEQSI 890

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +G   S HPL      L K   + +         +  R+ A V + +  +T+ G  + ++
Sbjct: 891  IGVGLSDHPL----VKLAKEAAQPFSWIAELTENSRARILAEVQTIKTIRTKNGENMAFL 946

Query: 1019 TFSEPAKEYEANFFP 1033
              S+  K+ +   FP
Sbjct: 947  QVSDTKKKLDVTLFP 961


>gi|307294093|ref|ZP_07573937.1| DNA polymerase III, alpha subunit [Sphingobium chlorophenolicum L-1]
 gi|306880244|gb|EFN11461.1| DNA polymerase III, alpha subunit [Sphingobium chlorophenolicum L-1]
          Length = 1159

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/1090 (22%), Positives = 445/1090 (40%), Gaps = 102/1090 (9%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS-------- 59
            +P F  L   +++S L GA    +++ +        + I D N +   +           
Sbjct: 6    APPFAELVAATNFSFLRGASHAQDMVTRAIILGLEGLGIADRNTVAGVVRAHVARKRWPE 65

Query: 60   -------QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQR 111
                   +    AG  P +  + +   + +L++    +  F    P IV   +T  G+ R
Sbjct: 66   RMRAALLEARKEAGQPPELSEEEERACRTDLRLVVGARLVFADGTPDIVAYPATRRGWGR 125

Query: 112  LIELVSRMYLLDQGKQ----------------SVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            L  L++R  L                       + +  +   E    G  +       P 
Sbjct: 126  LTRLLTRGNLRAVKGGCILHFNDLLNYLDDLLLILLPEATGSEEEAHGDPVAYPFDDAPQ 185

Query: 156  DRAFFFNSS------QVAEKRLLTFKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHE 208
              A    S       +  E+ L         R+++ +   H G DR     +  +A +  
Sbjct: 186  AEAPSPLSLVPPLPPETVEESLRRLAAKAPGRVWLGVSHHHGGKDRRIADHLASVARSLS 245

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDL 267
            +PL+ATN++L+ +  D    DVL  + H T V++     +   + +LK   EM  + +  
Sbjct: 246  VPLLATNDALYAAPSDRPLQDVLNCIRHGTTVAKAGTLLQANAERHLKPPDEMARLHALW 305

Query: 268  PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
            P+A+  ++ +     F L       P     E        ++ L +        R     
Sbjct: 306  PDAVAQSMRLLSMIDFDLDQLRYEYPHEPVPEG----WSPQDWLAHLVWEAAARRY---- 357

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV-GPGRGSGAGSVT 386
                      RQR++ EL  IA   ++ YFL V D +++A++   P+   GRGS A S  
Sbjct: 358  -EGRTMPDPLRQRVEQELCFIAEHGYAYYFLTVHDVVKFAQEQKPPILCQGRGSAANSAV 416

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
             + L +T +DP R  LLF RF++ DR   PD D+DF  +RR+EV++Y+  +YG  R    
Sbjct: 417  CFLLGVTSVDPERHDLLFSRFISADRGEPPDIDVDFEHERREEVMQYIYRRYGRHRAGIA 476

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T    ++++A+R+V +AL +      R+   +    +  +  Q + +        L +P
Sbjct: 477  ATVIHYRSRSAVREVAKALGLSEDIAARIGSTVWGSYSGDLGEQRLIE----AGFDLRNP 532

Query: 507  SVDRLLEISQKL--EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
             + RL  +  +L  E   RH S H  G V+    L + VP++     D    +++   I+
Sbjct: 533  QIVRLRALLDQLLREPFPRHLSQHVGGFVLTQDRLDETVPIHHAAMEDRSFIEWDKDDID 592

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF--DDHETYHLLTTKGTLGIFQ 622
              GL+K D L L  L+ ++++ D + ++G+      +    DD   Y +L    ++G+FQ
Sbjct: 593  ALGLMKVDVLALGMLSCIRRAFDLMREQGLGDHQLTVDLEADDDAVYDMLCKGDSIGVFQ 652

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP---- 676
            +ES      L  ++P  + D+   V++ RPGPI  D +  Y  R+ G+EK+    P    
Sbjct: 653  VESRAQINMLPRLKPRSLYDLTVQVAIVRPGPIEGDMVHPYLRRRCGEEKVDYPSPSPEH 712

Query: 677  ----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKER 731
                 +  +L +T GV ++QEQ M++A + + +S ++A+ LRRAM   +    +   +E+
Sbjct: 713  GPANELRSLLGKTCGVPLFQEQAMRLAIVAADFSDADANRLRRAMATFRNVGTIHHFREK 772

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
             I G  K G     A   F+ +  F  YGF +SHA ++A + Y +AW+K H P  F  A 
Sbjct: 773  MIKGMVKRGYEAEFAQRCFKQIEGFGSYGFPESHALSFARLVYVSAWIKCHQPAVFACAL 832

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----------------NRI 835
            +  +        +  +DAR   + +    VN    D  +                    +
Sbjct: 833  LNSQPMGFYAPAQIVRDARDHGVTVHDADVNMSGWDNGLEPLLRLRKSHRGEGQGRALAL 892

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  I G     A  ++ A AD  F ++E+   R        R+L     A A    G
Sbjct: 893  RLGLRQIDGFREDWADRLVAARADGLFATMEELARRAGLPGRALRLL---ADADACRSMG 949

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R   L           W  +   +    +FA  +     +       V   S + E +
Sbjct: 950  QDRRAAL-----------WEARRTPSDELPLFAAARARELGEEPDAMLPVMPLSEQVEAD 998

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
              V      GHP+   +P+    G+    E+ A   G  ++ A +V+ +Q+    KG+ +
Sbjct: 999  YLVTRLSLKGHPMQFLRPVFAAEGVLSCAETAAAKNGARVKTAGVVLVRQRPG--KGNAV 1056

Query: 1016 GWVTFSEPAK 1025
             ++T  +   
Sbjct: 1057 -FITIEDETG 1065


>gi|86750673|ref|YP_487169.1| error-prone DNA polymerase [Rhodopseudomonas palustris HaA2]
 gi|123292295|sp|Q2IU52|DNAE2_RHOP2 RecName: Full=Error-prone DNA polymerase
 gi|86573701|gb|ABD08258.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris HaA2]
          Length = 1165

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/1110 (23%), Positives = 441/1110 (39%), Gaps = 131/1110 (11%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----QKA 62
             +P +  + V +++S LEG     + + + +     AI I D N L   +        + 
Sbjct: 2    NAPRYAEIGVTTNFSFLEGGSHPQDYVHQASRLGLDAIGIADRNTLAGVVRAYSELDNEE 61

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
             A   + +IG +L                     P ++   +    Y RL  L+S   L 
Sbjct: 62   LAYKPKLLIGARLCF---------------VDGTPDVLAYPTDRAAYGRLCRLLSAGKLR 106

Query: 123  DQGKQSVRICLSWLQEI-----------GTEGLIMLT----------------GGSSG-- 153
              GK    +  + L+                GL   +                 G  G  
Sbjct: 107  -AGKGECHLTFADLEAFVSSNAARPFPSSWPGLTRPSTSLQPRVLQDVDARDKPGHDGGK 165

Query: 154  -PIDR--------AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQL 203
              I R          +   ++     L     L    +++ L   +RG D+ R +++ ++
Sbjct: 166  REIGRSQILFVLMPPYRFQAKAITAALERLTALNSGNVWLALAPYYRGDDKRRLARLRRI 225

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSEMVS 262
            A   ++P +ATN+ L+         DVL  V   T + +  R      + +LK  +EM  
Sbjct: 226  AAAADVPGIATNDVLYHHPSRRALQDVLTCVRDKTTIDKAGRRLEGNAERHLKPAAEMAR 285

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            +F    +A+  T+  A R SF L       P           K  +  L +    G+   
Sbjct: 286  LFRADLDAVAETLRFADRISFTLDELKYHYPDEPVPPG----KTAQQHLEDLTREGIATY 341

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
               G   +       R  +  EL +IA+  ++ YFL V D +++A+  NI +  GRGS A
Sbjct: 342  FPNGISDR------LRATIAKELTLIAKRDYAHYFLTVHDIVRYARSQNI-LCQGRGSAA 394

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
             S   Y L IT +DP    LLFERF++ +R   PD D+DF   RR+EV++Y+  +YG  R
Sbjct: 395  NSAVCYVLGITCVDPTEIDLLFERFVSEERDEPPDIDVDFEHSRREEVMQYIYRRYGRHR 454

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
             A + T    + ++A+RDVG+AL +       L   +       +S      + + R+A 
Sbjct: 455  AAIVSTVIHYRPRSAIRDVGKALGLSEDVTAALADTVWGSWGKGLS------EMQVRQAG 508

Query: 503  L--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
            L   +P + R +E++ +L G  RH S H  G V+    L   VP+     +D    +++ 
Sbjct: 509  LDPTNPMIGRAVELATELIGFPRHLSQHVGGYVLTQDRLDSYVPIGNAAMADRTFIEWDK 568

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL-IPFDDHETYHLLTTKGTL 618
              I+   ++K D L L  LT ++K  D +AQ   V+  LS     DD+  Y +L    ++
Sbjct: 569  DDIDAVKMMKVDVLALGMLTCIRKGFDLIAQHKGVRFQLSDIKSEDDNNVYQMLQRGESI 628

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP 676
            G+FQ+ES      L  ++P C  D++  V++ RPGPI  D +  Y  R+NG+E +V   P
Sbjct: 629  GVFQVESRAQMNMLPRLKPRCFYDLVIEVAIVRPGPIQGDMVHPYLRRRNGQEPVVYPSP 688

Query: 677  --------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDK 727
                     +  +L +T GV ++QEQ M+IA   + ++  EA+ LRRAM   +    + K
Sbjct: 689  SGEAGDKNELQQILGKTLGVPLFQEQAMRIAIEAAHFTPDEANQLRRAMATFRNVGTIGK 748

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             + + I      G   T A N FE +  F  YGF +SHAA++A + Y +AWMK  +P  F
Sbjct: 749  FESKMIGNLMARGYDATFAKNCFEQIKGFGSYGFPESHAASFAKLVYVSAWMKCEHPDAF 808

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYYSLAAI 842
              A +  +        +   DAR   +++ P  V+       +       + +      I
Sbjct: 809  CCALLNSQPMGFYAPAQIVGDARANKVEVRPVDVSFSDGQCTLEERCGAYHAVRLGFRQI 868

Query: 843  KGVGTTT-ARHIMEASAD-----------------KPFDSLEDFCSRVDSKKLNRRVLES 884
             G          +   A                   PF SLE F        L +R L  
Sbjct: 869  DGFRWADPDEERVRLEAGLPPSDDWAARIVAARARGPFGSLEQFAR---ITALPKRALIL 925

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  A A    G  R   L ++  +                 +F                 
Sbjct: 926  LADADAFRSLGLDRRAALWAVRRLPDDV----------PLPLFEAASAREQQDEQAAPLP 975

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVS 1003
                +     + + +     GHPL+  + +     +    E   T R G  +R A +V+ 
Sbjct: 976  QMPMAEHVVADYQTVRLSLKGHPLEFLRAVFATERVVTCREVSETRRNGRRVRCAGVVLV 1035

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +Q+  +  G  + ++T  +         +P
Sbjct: 1036 RQRPGSASG--VIFMTIEDETGIANIVVWP 1063


>gi|282864426|ref|ZP_06273482.1| DNA polymerase III, alpha subunit [Streptomyces sp. ACTE]
 gi|282560913|gb|EFB66459.1| DNA polymerase III, alpha subunit [Streptomyces sp. ACTE]
          Length = 1154

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/1062 (26%), Positives = 460/1062 (43%), Gaps = 62/1062 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL   S +SL  GA     + ++ A  +  A+A+TD + L   + F++    AGI+
Sbjct: 2    PGFTHLHTVSGFSLRYGASHPERLAERAAEREMDALALTDRDTLAGTVRFARACEDAGIR 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTP----------FPTVPSIVLLVST-AEGYQRLIELVS 117
            P+ G +L +          +   P            + P +  L    A G+  L  LV+
Sbjct: 62   PLFGTELAVAPFAGGGGAGRTHRPRTPVRGGAFVDESAPRVTFLARDGAHGWAELCRLVT 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              +  D G       L     +  EGL +L G  +  +  A        A   L  +++L
Sbjct: 122  AAHAPDMGAADTGQPLVGRAALPAEGLTVLLGP-ASEVGAALAAGRPDRAAALLAPWREL 180

Query: 178  FGDRLYVNLQRHR----GYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +GD L +    H     G    R + + V  A    +  V TN   +         DVL 
Sbjct: 181  YGDALRLEAVHHGRAGTGPGSLRLAARTVGFAADQGVRAVLTNAVRYADPGQGPVADVLD 240

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARRC 281
            +      V  +  P  + + +LK+   M      +  A           L  T   A  C
Sbjct: 241  SARRLVPVDPRRSPLDSGERWLKDARAMRETAERITSAAGLGPGAGERLLAETRHTADAC 300

Query: 282  SFILQVHAPILP-RFIEKECDDI-QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
                     +    F E       ++  +  L ++A AG+ +R   G        +DY +
Sbjct: 301  RVDPVDDLGLGSVHFPEPHLVGAERRTAQRVLASRAAAGMVLRGLDG-------RRDYWE 353

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            R+  EL++IA   F+ YFL VA  +   K   I V   RGSGAGS+  + L I   DP+ 
Sbjct: 354  RMHHELDIIAHHGFASYFLTVAQVVDDVKGMGIRVA-ARGSGAGSLVNHLLGIAHADPVE 412

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              LL ERFL+  R  +PD DID    RR EV R +  ++G ERVA +    + + + A+R
Sbjct: 413  HGLLMERFLSKRRFVLPDIDIDVESARRLEVYRAIIGRFGAERVATVSMPETYRVRHAIR 472

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            DVG AL M  ++ DRL K  P+  A      A+ +    RE         RL E+ + L+
Sbjct: 473  DVGAALSMDPAETDRLAKAFPHIRARDARA-AMEELPELREVAGRKERYGRLWELVEALD 531

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
             L R  + H  G+++ D  L +  P+        P+ QF+   +E  GL+K D LG++  
Sbjct: 532  ALPRGIAMHPCGVLLSDDSLLRRTPVVPTSGEGFPMAQFDKDDVEHLGLLKLDVLGVRMQ 591

Query: 580  TLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            + +  ++ +     G +VDL  +P DD ETY L+ +  TLG FQ+ES G R  +  +QP 
Sbjct: 592  SAMAHAVTELERASGQEVDLDAVPPDDPETYRLIKSTETLGCFQIESPGQRDLVGRLQPA 651

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
               D++  +SL+RPGP+  D +  +   ++G+  +   HP ++  L++T GV+++ EQ++
Sbjct: 652  TFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRYPHPDLEGPLRDTYGVVVFHEQII 711

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            ++  +++G    EAD +RR +     E   + K  F   A++ G    +    +E++  F
Sbjct: 712  EMVDIMTGCGRGEADRVRRGLS--DPESQGRIKVWFALRAAERGYGAEVVDRAWEIVEAF 769

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
              YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+  + +
Sbjct: 770  GSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRGVPV 828

Query: 817  MPPSVNTPCVDFKV------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
            +P  VN       +      G   +  +L+ + G+       I    A +P+ SL DF  
Sbjct: 829  LPLDVNRSAAAHGIELVSEKGVWGLRLALSDVHGISEAEVARI---EAGQPYSSLLDFWQ 885

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            R    +  +   E L   GALD FG +R  LL  L  + +  +          +      
Sbjct: 886  RA---RPGKPAAERLAQVGALDAFGANRRDLLLHLSELHRAQRGAGARGGAGAQLPLGD- 941

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             G  +  + L      N + R   E  VL    S H +  +   L ++G    +      
Sbjct: 942  -GHRTGTVGLPDL---NDAERLSAELGVLSMDVSRHLMGDHHTFLEELGALSAKRLREAA 997

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             G  + +A    + Q    R G R+ + T  +     +  FF
Sbjct: 998  HGETVLVAGAKAATQTPPVRSGRRVVFTTLDDGTGLVDLAFF 1039


>gi|227505308|ref|ZP_03935357.1| error-prone DNA polymerase [Corynebacterium striatum ATCC 6940]
 gi|227198106|gb|EEI78154.1| error-prone DNA polymerase [Corynebacterium striatum ATCC 6940]
          Length = 1013

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1041 (26%), Positives = 448/1041 (43%), Gaps = 99/1041 (9%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            ++   S +F  L   SSYS L+GA     ++ +        +A+ D +  +  ++F++ A
Sbjct: 5    EHGASSVAFAELHAVSSYSFLDGASEPEELVARAVELGLCGLALVDKDGFYGLMKFAEAA 64

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G+  +                  G     +   + +L  T EGY+RL  L+++  + 
Sbjct: 65   ARVGLPAVF-----------------GAELSLSDAPLTVLARTPEGYRRLSRLIAQARMD 107

Query: 123  DQGKQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
               K  V    L  + E   +  + L G          + +      +R+        D 
Sbjct: 108  AGVKDEVAYPPLGEIAERLQDHCLFLVG--------WEWLDKIDHLLERIK------IDS 153

Query: 182  LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + +        +         L   + L  +AT      + +         A+A    + 
Sbjct: 154  IVLEYACTMTPEDA--DHYAALDRYNGLRAIATARPAAATRQQARLAGAKRALARRQSLE 211

Query: 242  QKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            Q           +L++  +M  +F D PE +  TV +   CSF     AP LP F   + 
Sbjct: 212  QAAPDAHPMGAGWLRSGEQMAQLFPDRPELIAETVAVLSECSFTWDALAPNLPDFEVPDG 271

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                  E   L +      E R A          +   +++ +EL VI ++ F GYFLIV
Sbjct: 272  ----YTEMTWLEHLTWERAEERYASRPAD---VQERAWKQIAYELGVIEQLTFPGYFLIV 324

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + + K++NI +  GRGS A S   +AL IT+ +P+   LLFERFL+PDR   PD DI
Sbjct: 325  CDLVDFCKRSNI-LCQGRGSAANSAVCFALGITNAEPISAGLLFERFLSPDRDGPPDIDI 383

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D    RR+EVI+YV  KYG ER AQ+    + + K A RD  RAL  P    D   K + 
Sbjct: 384  DIESGRREEVIQYVYEKYGRERAAQVANVITYRRKGATRDAARALGYPQGSADSWSKGLS 443

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              P                           +++++++  G  RH   H+ G+V+ DRP++
Sbjct: 444  QPPGD-------------------------VVKLAEQFLGQPRHLGIHSGGMVLCDRPIA 478

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLS 599
             +VPM         V Q++      AGL+KFD LGL  L  L    D + +      +L 
Sbjct: 479  DVVPMEWARMEKRSVLQWDKDDCAAAGLVKFDLLGLGMLEALHHMQDLVEETTGHKVNLW 538

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
             +   + E Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI    
Sbjct: 539  ELDLAEKEVYDMLCRADAVGVFQVESRAQLSTLPRLKPRKFFDLVVEVALIRPGPIQGGS 598

Query: 659  -VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
               Y  R++GKE +   HP+++  L +T G+ ++QEQ+MQIA   +G+S +EAD LRRAM
Sbjct: 599  VHPYLRRRDGKEAVTYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFSGAEADDLRRAM 658

Query: 718  -GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
              K+    M   ++RF  G ++ NGI    A  ++  +  FA YGF +SH+ ++A + Y 
Sbjct: 659  GSKRSPARMAAIRQRFYDGLAQTNGIVGETADKLWNKIVAFAAYGFPESHSQSFASLVYF 718

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----- 830
            +AWMK HYP +F    +  +       +   QDAR+  + ++P  VN      +      
Sbjct: 719  SAWMKYHYPAQFCVGLLRAQPMGFYSPQSLIQDARRHGVAVLPLDVNASGCQARAVVQDG 778

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            G+  I   L  IKG+G   A+ I +A A  PF  + D   R D    +   +E+L  AGA
Sbjct: 779  GEVAIRLGLNLIKGLGEKAAQRIEDACAQAPFQDIADLSRRADLSVEH---VEALAGAGA 835

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            LDCFG SR Q L         A      R      + A    +       E  + + +S 
Sbjct: 836  LDCFGLSRRQALWQ-------AGVAATERAGMLPGLSAISAPSLPGMSAFELMASDVAST 888

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
               ++++         P+++ +  L    +    +      G  +R+A +V  +Q+ +T 
Sbjct: 889  GVTHDKQ---------PMELVRAALNDAHVCTAAQLRQVPDGTRVRIAGIVTHRQRPQTA 939

Query: 1011 KGSRIGWVTFSEPAKEYEANF 1031
             G  + ++   +         
Sbjct: 940  AG--VIFLGLEDETGLMNVMV 958


>gi|55821207|ref|YP_139649.1| DNA polymerase III DnaE [Streptococcus thermophilus LMG 18311]
 gi|55737192|gb|AAV60834.1| DNA polymeraDNA polymerase III alphase III alpha subunit
            [Streptococcus thermophilus LMG 18311]
          Length = 1036

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/1025 (28%), Positives = 491/1025 (47%), Gaps = 100/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS ++  + LN  + +       +I + D +NL++A  F+Q A   G++P+
Sbjct: 2    FAQLDTKSVYSFMDSVVDLNTYVKRAKELGYQSIGLMDRDNLYAAYHFAQLAIRNGLRPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + ++  +                    LL    +GY+ LI+L + +     G++   
Sbjct: 62   IGTEANLFYEGRK-------------IPFRLLAKNNQGYKNLIKLATELSS---GQREFT 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                +L +I    LI+ +                         +                
Sbjct: 106  YFSDYLNDIA---LILPS-----------------------EDW----------EPGMSL 129

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G + +   +        + P+V  +   +    D      L A++ +  +S+     +  
Sbjct: 130  GSEVFIGVRPEDAGKEFDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEVSICPMN- 188

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               L +  EM   +S LPEAL N  ++    S+    +   LPRF      + +    ++
Sbjct: 189  -QLLFSAKEMEEAYSKLPEALNNLNQLVSDVSYQFDTNL-KLPRF------NREMPAVDQ 240

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A +GL+        +K      Y++RLD EL++I +M F  YFLIV D +++ +  
Sbjct: 241  LRQLAQSGLD--------SKALREPAYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSR 292

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ AY L IT IDP++  LLFERFLN +R SMPD DID     R E 
Sbjct: 293  GYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNKERYSMPDIDIDLPDIYRSEF 352

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+++YG +  AQI+TF +  AK A+RDV +       ++ +L K I           
Sbjct: 353  LHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKISFRDTLTT--- 409

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+         R  EI++ +EG  R  S HAAGIV+ D  L+  +P+     
Sbjct: 410  VYEKNMSFRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--KAG 467

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + L +   + +D+  I  +D +T 
Sbjct: 468  EDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGIAIDIKSIDLEDSQTL 527

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E +G    L+ ++P   E+++A  SL RPG  D    +  RK GKE
Sbjct: 528  ALFASGKTKGIFQFEQAGAINLLKRIKPAKFEEVVATTSLNRPGASDYTDNFVARKYGKE 587

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  I P++ P+L+ T G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK   EM K  
Sbjct: 588  KVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKDANEMSKMS 647

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E+F+ G+ + G    +A  +F ++ KFA YGFNKSHA AY+ +++Q A+ KTHYP  F  
Sbjct: 648  EQFMEGSRQLGRDPQVAKRLFSMITKFAGYGFNKSHAYAYSALAFQLAYFKTHYPQIFYD 707

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      + +DA +    +    +N      K+ D +I   L  IKG+    
Sbjct: 708  VMLNYSSSD------YIRDAIENGFSLASLDINRIPYMDKISDGKIVLGLKTIKGLPRDF 761

Query: 850  ARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A  I+E    +  + S+EDF +R+ SK     +L  L+  G  D F  +R +++ +L N+
Sbjct: 762  ALWIIEDRQQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDRFEPNRRKIIGNLSNL 821

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++FA    ++       ++   + + R+  EQ +LG   S HPL
Sbjct: 822  FTFV--------NELGSLFAESSYSW------VEYEDYSQTERYSIEQDLLGVGLSTHPL 867

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                 + +KM  + Y+        +   +   + S +  +T+KG ++ +++  +   + +
Sbjct: 868  ----HLAQKMASRPYQPISELTLNSKATVLVQLESVRIIRTKKGDQMAFLSVFDGVNKLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|324990960|gb|EGC22895.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK353]
          Length = 1042

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/1025 (28%), Positives = 491/1025 (47%), Gaps = 102/1025 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 9    IQLDTKTVYSFMDSLIPIKKYVQKAKDLGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 68

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +L +                     + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 69   GLELSL-------------IKAEQELHLRLLALDSQGYRNLMK-VSTLKMMGQ------- 107

Query: 132  CLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              +W       +GL ++     G            VA+  L                   
Sbjct: 108  -KNWEDFQHLFKGLAVIVPAFDG------------VADLDL------------------- 135

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D Y              P +  +   +    D E   +L A+  +  + +     +  
Sbjct: 136  GLDFYVGVFPATPQQEFGRPTLPLHTVRYFDRGDLETLQMLRAIRENASLREIG--SLPN 193

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              +L     +   F +  PE+L N  ++ R   + +      LPRF      + ++    
Sbjct: 194  HEFLLAPDALAGAFMETFPESLANLEKLVRDVHYDIN-RELKLPRF------NRERPAVE 246

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL  ++ AGL+ R        G   + Y++RLD EL VI +M F  YFLIV D +++ + 
Sbjct: 247  ELLERSEAGLKKR--------GLTGKLYQERLDQELAVIHQMGFDDYFLIVWDLLRFGRS 298

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E
Sbjct: 299  QGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPE 358

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +     
Sbjct: 359  FIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT--- 415

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+    
Sbjct: 416  SAYEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL--KY 473

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D  T
Sbjct: 474  GEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLEKYKVDIEIAEIDLEDANT 533

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G 
Sbjct: 534  LKLFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGL 593

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + 
Sbjct: 594  EQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMHRM 653

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 654  QEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDVFF 713

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA  F+ +  P S+N      K  D +I+  +  IKG+   
Sbjct: 714  DVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLGMKNIKGLPRD 767

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+
Sbjct: 768  LAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNL 827

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +A        ++  ++FA    ++++          + + +FE EQ ++G   S HPL
Sbjct: 828  FVFA--------DELGSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSDHPL 873

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                  L K   + +         +  R+ A V S +  +T+KG  + ++  S+  K+ +
Sbjct: 874  ----VKLAKEADQPFSWISELTENSRARILAEVQSIKTIRTKKGENMAFLQVSDTKKKLD 929

Query: 1029 ANFFP 1033
               FP
Sbjct: 930  VTLFP 934


>gi|237799621|ref|ZP_04588082.1| error-prone DNA polymerase [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331022476|gb|EGI02533.1| error-prone DNA polymerase [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 869

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/917 (28%), Positives = 427/917 (46%), Gaps = 66/917 (7%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S  +  L   S++S   GA S   + ++       A+AITD   L   +   Q +   G+
Sbjct: 2   STDYAELHCLSNFSFQRGASSARELFERALRHGYTALAITDECTLAGIVRAWQASKDTGV 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             I+G ++ I+                  P +VLLV    GY+ L +L++        K 
Sbjct: 62  PLIVGSEMHIENG----------------PKVVLLVENKAGYEALCKLITVARRR-ARKG 104

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             R+    + E+  +GL+ +     G   +A     +          ++LF +RL++ ++
Sbjct: 105 EYRLLREDV-EVSLDGLLAIWLPDIGDDAQACLSQGN--------WLRELFAERLWLGVE 155

Query: 188 RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            HRG D   R + ++ LA    +P VA+ +    +       D + A+ H T V++    
Sbjct: 156 LHRGPDDDQRLADLLALAQALGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEAGHL 215

Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                + +L++   +   + D    L  +  IARRC+F L       P  +  +     +
Sbjct: 216 LFANGERHLRSLDTLAEHYPDW--LLAESARIARRCTFDLDQLKYEYPHELVPKG----Q 269

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + LR     G+  R   G           R +++ EL +I   KF  YFL V D ++
Sbjct: 270 TSSSWLRELTERGIRRRWPNGLSTVA------RAQVEKELALIKEKKFDSYFLTVHDIVE 323

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  D
Sbjct: 324 FARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISRERDEPPDIDVDFEHD 382

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+YV  +YG  R A      +     A+RDV + L +P  Q++ L +        
Sbjct: 383 RREEVIQYVFRRYGRGRAALTAVASTYHGSGAVRDVAKVLGLPPDQINTLAEAFSRWS-- 440

Query: 486 PVSLQAIADDSRFREAR--LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                ++    R RE       P + R+L ++ +L G  RH S H  G VI + PL  LV
Sbjct: 441 ----DSLPSPERLREYGFNAETPVLKRVLTLTGELIGFPRHLSQHPGGFVISEHPLDTLV 496

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602
           P+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P
Sbjct: 497 PVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADLP 556

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
            DD +TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  
Sbjct: 557 GDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHP 616

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
           Y  R+NG+E +    P+++ + K T GV ++QEQVM++A + + Y+  EAD LRRAM   
Sbjct: 617 YLRRRNGEEAVTYP-PMLESVFKRTLGVPLFQEQVMEVAIIAADYTPGEADQLRRAMAAW 675

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           K    +D  +ER  +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W+
Sbjct: 676 KRHGGLDPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWL 735

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------- 832
           K H P  F  A +           +  QDAR+ +I+I P  V     D  +         
Sbjct: 736 KCHEPAAFACALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSHWDCSLEPVEHPDRT 795

Query: 833 --NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I   L  ++      A  I  A + +PF    D   R     L+ R  E+L  +GA
Sbjct: 796 RNLAIRLGLRMLRSFREDDALRIEAARSKRPFTDATDLAQRA---GLDSRAAEALADSGA 852

Query: 891 LDCFGYSRMQLLQSLDN 907
           L      R +    +  
Sbjct: 853 LRGLIGHRHRARWEVAG 869


>gi|226357239|ref|YP_002786979.1| DNA polymerase III subunit alpha [Deinococcus deserti VCD115]
 gi|226319229|gb|ACO47225.1| putative DNA-directed DNA polymerase (DNA polymerase III, alpha
            subunit) [Deinococcus deserti VCD115]
          Length = 1341

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/730 (42%), Positives = 442/730 (60%), Gaps = 24/730 (3%)

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
             +   A   HA    +R ++EL+VI  M F  YFLIVAD+I WAK  +I VGPGRGSGAG
Sbjct: 467  EETTRAHHKHALVILRRAEYELSVINNMGFPDYFLIVADYINWAKDQDISVGPGRGSGAG 526

Query: 384  SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            S+ AYA+ IT++DPL F+LLFERFLNPDR+SMPDFDIDF   RR EVI YVQ+KYG ++V
Sbjct: 527  SLVAYAMRITNLDPLEFALLFERFLNPDRISMPDFDIDFNDARRSEVIAYVQDKYGEDKV 586

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREAR 502
            AQI TFG++ +KA L+DV R + + Y++VD++ KLIP       SL QA        +  
Sbjct: 587  AQIATFGTMASKACLKDVARVMGLEYAKVDKVSKLIPIKFGKSYSLEQAREAVPDIAQML 646

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
              D  +    E +QKLEGL RHAS HAAG+VIG   L+ LVP+ RD   +  V Q++MK 
Sbjct: 647  AEDGQLLEAYEFAQKLEGLTRHASVHAAGVVIGKTQLTDLVPVMRDTSGEGMVCQYDMKA 706

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            +E  GLIK DFLGL+TL+ L ++   + + RG+++D   IPFDD  TY L++   T G+F
Sbjct: 707  VEDIGLIKMDFLGLRTLSFLDEARRIMRESRGIEIDFDAIPFDDARTYELMSRGDTKGVF 766

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP----- 676
            QLE +G+  A   ++P  + DIIAL +LYRPGP++NI  Y  R +G E++  +       
Sbjct: 767  QLEGAGIADASRRLKPRRLADIIALSALYRPGPMENIPTYVRRHHGLEEVDYVRDGFPTS 826

Query: 677  --LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
               ++ +L ET G+ +YQEQ+MQIA  ++G+SL  AD+LRRAMGKK  EEM +Q++ F+ 
Sbjct: 827  AKYLEKILAETYGIPVYQEQIMQIASEVAGFSLGGADLLRRAMGKKDAEEMKRQRQIFVE 886

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            GA  NG+ K  A  +F+LL  FA+YGFNKSH+AAY VI+YQTAW+K +YPVEF+AA +T+
Sbjct: 887  GAGNNGVPKEEANKLFDLLDAFANYGFNKSHSAAYGVITYQTAWLKANYPVEFMAALLTV 946

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
            E  + +K+ ++  DAR+ ++ ++PP +N    DF V    I + L AIKG+G    + I+
Sbjct: 947  ERRDSDKVAEYVSDARKMDVHVLPPDINRSAPDFAVEGEEILFGLYAIKGLGEAAVQRIL 1006

Query: 855  EASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            E       + SL DFCSR+ +K  NR+ +ESL+ +GA D FG  R QLL SL++  + A 
Sbjct: 1007 EERQRAGRYKSLADFCSRLGNKVCNRKAMESLIKSGAFDQFGE-RNQLLHSLEDALEDAA 1065

Query: 914  WVE---KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
                      +    +F  E+    ++             R   E+  LG Y SGHPL+ 
Sbjct: 1066 STADINAKAASGMSMMFGMEE-VKKERPLRSGIPPFTDLERLSIEKEALGLYISGHPLEQ 1124

Query: 971  YKPILRKMGIKGYEES------VATIRGNNIR--LAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            ++  LR+       +            G  ++  LA M+    +K T+ G  +     ++
Sbjct: 1125 HEG-LREAASCRISDLDTWFTQQNVAPGKRLKAVLAGMIEGVVKKPTKSGGMMARFILAD 1183

Query: 1023 PAKEYEANFF 1032
             + + E   F
Sbjct: 1184 ESGQTELVAF 1193



 Score =  272 bits (695), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 91/330 (27%), Positives = 151/330 (45%), Gaps = 13/330 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAA---DQ-QPAIAITDTNNLFSALEFSQKACAA 65
            F HL  H+ YSLL+GA  L ++L        +   PA+A+TD  N+  A+ F   A AA
Sbjct: 33  RFAHLHQHTQYSLLDGAAKLKDLLKWAKEVTPEGCTPALAMTDHGNMHGAVHFYNYAQAA 92

Query: 66  GIQPIIGCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           G++PIIG +  +      +    + +     +  + LL    EGYQ L  L SR Y    
Sbjct: 93  GVKPIIGYEAYVVPGQGTRRDRTRAQDGEKGIFHLTLLARDFEGYQNLCRLSSRGYTEG- 151

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                RI    LQE   +G+I  +G     + +       + A+KRLL +++LFG+  Y+
Sbjct: 152 YYYKPRIDHELLQE-HHKGVIAFSGCLGSEVQQLLLQGREEDAKKRLLWYRELFGENYYI 210

Query: 185 NLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +Q H   ++ R + +++  A    + +VATN+  ++ + D  AH+ L+A+     ++ +
Sbjct: 211 EIQDHGLPEQKRNNPILRAWAQELGIGMVATNDGHYVKKSDATAHETLLAIQTKATLADE 270

Query: 244 DRPRVTPDHYL-KNRSEMVSIF--SDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKE 299
           +R +   D +  KN  EM +    SD  E   +NT  IA  C+  L V    + +     
Sbjct: 271 NRFKFPCDEFYVKNLEEMQAALPVSDWGEEPFDNTSAIADLCNVDLPVGKKRVYQMPALP 330

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
             +  +    ELR +   G   R    A  
Sbjct: 331 IPE-GRTMAEELRIQTYRGTVKRYPGHATE 359


>gi|182418120|ref|ZP_02949420.1| DNA polymerase III subunit alpha [Clostridium butyricum 5521]
 gi|237666184|ref|ZP_04526171.1| DNA polymerase III subunit alpha [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377938|gb|EDT75478.1| DNA polymerase III subunit alpha [Clostridium butyricum 5521]
 gi|237658274|gb|EEP55827.1| DNA polymerase III subunit alpha [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 702

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/706 (38%), Positives = 412/706 (58%), Gaps = 29/706 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +E    FVHL +H+ YSLL+G+  +  ++ +       +IAITD   ++  ++F + A  
Sbjct: 1   MENEKKFVHLHLHTEYSLLDGSGKIKKLMKQTKELGMDSIAITDHGVMYGLVDFFKAAEE 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            GI+ I+GC++ +  +    M  +      +   +VLLV    GYQ L+++VS   +   
Sbjct: 61  YGIKAILGCEVYVAAKS---MHIKQPDKENSTHHLVLLVKNEIGYQNLMKIVSMASIEG- 116

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                RI   +L+   +EG+I L+    G +      ++ + A+K  L +K +F D  Y+
Sbjct: 117 FYYKPRIDHEYLKN-HSEGIIALSACLGGEVQSDLLNDNYEKAKKDALMYKDIFKDGFYL 175

Query: 185 NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +Q H   ++ + +++ ++LA    +PLVATN+  ++ +ED ++HD+LM +  +  V   
Sbjct: 176 EIQNHGMEEQKKVNELNIKLAEETGIPLVATNDVHYIKKEDSKSHDILMCIQTAKTVDDP 235

Query: 244 DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           +R R   D  YLK+  EM  +FS +PEALENTV+IA  C+F  + H   LP+F   E  D
Sbjct: 236 NRRRYPSDQFYLKSPEEMWDMFSYMPEALENTVKIADECNFKYKFHESKLPKFPLPEGKD 295

Query: 303 IQKEEENELRNKAVAGLEVRL---------------AQGAIAKGYHAQDYRQRLDFELNV 347
              +    L+     GL  R                    +     AQ++  RL++EL V
Sbjct: 296 ---DPYEYLKETCYTGLIDRYDVFKDLREKELDYDEVNKIVENSSEAQEFVDRLEYELGV 352

Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
           I +M +  YFLIV DFI+++  N IP GPGRGS AGS+ AY L IT IDP+++SL+FERF
Sbjct: 353 IKQMGYIDYFLIVWDFIKFSYDNGIPTGPGRGSAAGSIVAYTLGITKIDPIKYSLIFERF 412

Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
           LNP+R+SMPD D DFC +RR EVI YV  KYG + V+QIITFG++ A+  +RDVGRA+  
Sbjct: 413 LNPERVSMPDVDSDFCYERRQEVIDYVVRKYGKDCVSQIITFGTMAARLCIRDVGRAMNY 472

Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
            YS+VD++ K+IP      +  +A+  +   + A  +D  V  L+++S  LEGL RH+ST
Sbjct: 473 SYSEVDKIAKMIPTMLGITIE-KALDLNPELKIAYDSDERVKNLIDVSMDLEGLPRHSST 531

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           HAAG+VI  +PL + VP+ +    +  VTQF M  +E+ GL+K DFLGL+TLT++  ++ 
Sbjct: 532 HAAGVVIASKPLVEYVPLQK--NDESIVTQFGMNTLEELGLLKMDFLGLRTLTVMSDAIK 589

Query: 588 FLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            +   RGV +DL  I FDD E Y ++    T G+FQLES GM   ++ ++PD +EDIIA 
Sbjct: 590 MVKVNRGVDIDLDKIDFDDKEVYKMIGEGRTAGVFQLESPGMTSFMKELKPDNLEDIIAG 649

Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           +SLYRPGP+  I  Y   K   +K+    P ++ +L  T GV++YQ
Sbjct: 650 ISLYRPGPMAEIPRYIECKRNPDKVEYETPELESILNVTYGVMVYQ 695


>gi|55823117|ref|YP_141558.1| DNA polymerase III DnaE [Streptococcus thermophilus CNRZ1066]
 gi|55739102|gb|AAV62743.1| DNA polymeraDNA polymerase III alphase III alpha subunit
            [Streptococcus thermophilus CNRZ1066]
          Length = 1036

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/1025 (28%), Positives = 491/1025 (47%), Gaps = 100/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS ++  + LN  + +       +I + D +NL++A  F+Q A   G++P+
Sbjct: 2    FAQLDTKSVYSFMDSVVDLNTYVKRAKELGYQSIGLMDRDNLYAAYHFAQLAIRNGLRPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + ++  +                    LL    +GY+ LI+L + +     G++   
Sbjct: 62   IGTEANLFYEGRK-------------IPFRLLAKNNQGYKNLIKLATELSS---GQREFT 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                +L +I    LI+ +                         +                
Sbjct: 106  YFSDYLNDIA---LILPS-----------------------EDW----------EPGMSL 129

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G + +   +        + P+V  +   +    D      L A++ +  +S+     +  
Sbjct: 130  GSEVFIGVRPEDAGKEFDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEVSICPMN- 188

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               L +  EM   +S LPEAL N  ++    S+    +   LPRF      + +    ++
Sbjct: 189  -QLLFSAKEMEEAYSKLPEALNNLNQLVSDVSYQFDTNL-KLPRF------NREMPAVDQ 240

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A +GL+        +K      Y++RLD EL++I +M F  YFLIV D +++ +  
Sbjct: 241  LRQLAQSGLD--------SKALREPAYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSR 292

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ AY L IT IDP++  LLFERFLN +R SMPD DID     R E 
Sbjct: 293  GYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNKERYSMPDIDIDLPDIYRSEF 352

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+++YG +  AQI+TF +  AK A+RDV +       ++ +L K I           
Sbjct: 353  LHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKISFRDTLTT--- 409

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+         R  EI++ +EG  R  S HAAGIV+ D  L+  +P+     
Sbjct: 410  VYEKNMSFRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--KAG 467

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + L +   + +D+  I  +D +T 
Sbjct: 468  EDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGIAIDIKSIDLEDSQTL 527

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E +G    L+ ++P   E+++A  SL RPG  D    +  RK GKE
Sbjct: 528  ALFASGKTKGIFQFEQAGAINLLKRIKPAKFEEVVATTSLNRPGASDYTDNFVARKYGKE 587

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  I P++ P+L+ T G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK   EM K  
Sbjct: 588  KVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKDANEMSKMS 647

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E+F+ G+ + G    +A  +F ++ KFA YGFNKSHA AY+ +++Q A+ KTHYP  F  
Sbjct: 648  EQFMEGSRQLGRDPQVAKRLFSMITKFAGYGFNKSHAYAYSALAFQLAYFKTHYPQIFYD 707

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      + +DA +    +    +N      K+ D +I   L  IKG+    
Sbjct: 708  VMLNYSSSD------YIRDAIENGFSLASLDINRIPYMDKISDGKIVLGLKTIKGLPRDF 761

Query: 850  ARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A  I+E    +  + S+EDF +R+ SK     +L  L+  G  D F  +R +++ +L N+
Sbjct: 762  ALWIIEDRQQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDRFEPNRQKIIGNLSNL 821

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++FA    ++       ++   + + R+  EQ +LG   S HPL
Sbjct: 822  FTFV--------NELGSLFAESSYSW------VEYEDYSQTERYSIEQDLLGVGLSTHPL 867

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                 + +KM  + Y+        +   +   + S +  +T+KG ++ +++  +   + +
Sbjct: 868  ----HLAQKMASRPYQPISELTLNSKATVLVQLESVRIIRTKKGDQMAFLSVFDGVNKLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|227832328|ref|YP_002834035.1| DNA polymerase III, alpha subunit [Corynebacterium aurimucosum ATCC
            700975]
 gi|227453344|gb|ACP32097.1| DNA polymerase III, alpha subunit [Corynebacterium aurimucosum ATCC
            700975]
          Length = 1045

 Score =  734 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1039 (27%), Positives = 447/1039 (43%), Gaps = 106/1039 (10%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +  F  L   SSYS L GA     ++ +        IA+ D +  +  ++F++ A   G
Sbjct: 44   SAVPFAELHAVSSYSFLRGASEPEELVARAVDLGLWGIALVDRDGFYGLMKFAEAAAKVG 103

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +  + G +L +D                    + +L  T EGY+RL  L+SR ++    K
Sbjct: 104  LPAVFGAELSLDP-----------------APLTVLARTPEGYRRLSRLISRAHMEAGEK 146

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V      L EIG +             D   F    +  E   L    +  D + +  
Sbjct: 147  GVVSYPS--LAEIGAQLQ-----------DECLFLVGWEWVEHFDLLVDGIKIDSMVLEY 193

Query: 187  QRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVL---MAVAHSTVVSQ 242
               +  +      ++  L     +       +         A   L   +A+A ++  S 
Sbjct: 194  ACTQLPEDADHHLLMDSLPVPRAIATARPAAAAREHARLAGAKQALSRRLALADASPNSH 253

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                      +L++  +M  +  + PE +  TV +   CSF  +  AP LP F   E   
Sbjct: 254  PM-----GSSWLRSGEQMARLLPERPELIAETVRVLEECSFTWEALAPNLPDFDVPEG-- 306

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                E + L +        R A          +   +++ +EL V+ ++ F GYFLIV D
Sbjct: 307  --HTEMSWLEHLTFERAAARYA---TRPKEIRERAWEQMRYELGVVKQLGFPGYFLIVCD 361

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             + + K+ NI +  GRGS A S   +AL IT+ +P+   LLFERFL+PDR   PD DID 
Sbjct: 362  LVDFCKRENI-LCQGRGSAANSAVCFALGITNAEPISAGLLFERFLSPDRDGPPDIDIDI 420

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI+YV  K+G ER AQ+    + + K ALRD  RAL  P    D   K I   
Sbjct: 421  ESGRREEVIQYVYAKHGRERAAQVANVITYRRKGALRDAARALGYPQGSADAWSKGIAPA 480

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P+   SL                         + +  G  RH   H+ G+V+ DRP++ +
Sbjct: 481  PSDVESL-------------------------ADQFLGQPRHLGIHSGGMVLCDRPIADV 515

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+      +  V Q++      AGL+KFD LGL  L  L   +D + +  G  V+L  +
Sbjct: 516  VPVEWARMENRSVLQWDKDDCAAAGLVKFDLLGLGMLEALHHMMDLVEESTGRMVNLWEL 575

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--V 659
               D E Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI      
Sbjct: 576  DLADSEVYDMLCRADAVGVFQVESRAQLSTLPRLKPRVFFDLVVEVALIRPGPIQGGSVH 635

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-G 718
             Y  R++GKE +   HP+++  L +T G+ ++QEQ+MQIA   +G+S +EAD LRRAM  
Sbjct: 636  PYLRRRDGKEPVTYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFSGAEADDLRRAMGS 695

Query: 719  KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            K+   +M   K+RF  G  + NGI   +A  ++  +  FA YGF +SH+ ++A + Y +A
Sbjct: 696  KRSPAKMAALKQRFYEGLEETNGIVGEVADKLWAKIVAFAAYGFPESHSQSFASLVYFSA 755

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GD 832
            W K +YP +F    +  +       +   QDAR+  ++++P SVN    + +V     G 
Sbjct: 756  WFKRYYPAQFCVGLLRAQPMGFYSPQSLIQDARRHGVEVLPVSVNESGREARVVVGADGQ 815

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             RI   L  IKG+G   A  I  A+   PF  + D   R D    +   +E+L  AGALD
Sbjct: 816  TRIRLGLNLIKGLGDKAADRIEAAA---PFAGVPDLSRRADLTVDH---VEALAVAGALD 869

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
             FG  R Q L         A      R      + A         I        ++    
Sbjct: 870  VFGVDRRQALWQ-------AGVAATERAGMLPGLSA---------IEAPFLPGMSAFELM 913

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +    G   +  P++  +  L+  GI    +      G  +R+A +V  +Q+ +T  G
Sbjct: 914  AADVASTGVTHNQQPMEQVRGELQSRGILAAADLPGVEDGTRVRIAGVVTHRQRPQTAGG 973

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
              + +    +         
Sbjct: 974  --VVFFGLEDETGLMNVMV 990


>gi|325694254|gb|EGD36170.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK150]
          Length = 1069

 Score =  734 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/1024 (28%), Positives = 489/1024 (47%), Gaps = 100/1024 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36   IQLDTKTVYSFMDSLVPIKKYVQKAKDLGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G         +L +    K        + LL   ++GY+ L+++ +   +  +  +  + 
Sbjct: 96   GL--------DLSLIKAEKE-----LHLRLLALDSQGYRNLMKVSTLKMMGQKNWEDFQH 142

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L       LI+L       +D                          YV +     
Sbjct: 143  LFKGLA------LIVLAFDGVADLDLGM---------------------DFYVGVFPSTP 175

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P +  +   +    D E   +L A+  +  + +     +   
Sbjct: 176  K------------QEFGRPTLPLHTVRYFDRGDLETLQMLRAIRENASLREIG--SLPNH 221

Query: 252  HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +L     +   F +  PE+L N  ++ R   + +      LPRF      + ++    E
Sbjct: 222  EFLLAPDALAGAFKETFPESLANLEKLVRHAHYDIN-RELKLPRF------NRERPAVEE 274

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR ++ AGL+ R        G   + Y++RLD EL VI +M F  YFLIV D +++ +  
Sbjct: 275  LRERSEAGLKKR--------GLTGKLYQERLDQELAVIHQMGFDDYFLIVWDLLRFGRSQ 326

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E 
Sbjct: 327  GYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPEF 386

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +      
Sbjct: 387  IRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT---S 443

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+     
Sbjct: 444  AYEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPL--KYG 501

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETY 609
             D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D ET 
Sbjct: 502  EDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYKVDIEIAEIDLEDVETL 561

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G E
Sbjct: 562  KLFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGLE 621

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + +
Sbjct: 622  QVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMHRMQ 681

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F  
Sbjct: 682  EDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAFFKAHYPDVFFD 741

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA  F+ +  P S+N      K  D +I+  L  IKG+    
Sbjct: 742  VMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLPRDL 795

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+ 
Sbjct: 796  AYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNLF 855

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +A        ++  ++FA    ++++          + + +FE EQ ++G   S HPL 
Sbjct: 856  VFA--------DELGSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSDHPL- 900

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 L K   + +         +  R+ A V + +  +T+KG  + ++  S+  K+ + 
Sbjct: 901  ---VKLAKEADQPFSWISDLTENSRARILAEVQTIKTIRTKKGENMSFLQVSDTKKKLDV 957

Query: 1030 NFFP 1033
              FP
Sbjct: 958  TLFP 961


>gi|322392240|ref|ZP_08065701.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus peroris
            ATCC 700780]
 gi|321144775|gb|EFX40175.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus peroris
            ATCC 700780]
          Length = 1033

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/1023 (30%), Positives = 491/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +         ++ I D +NL+ A  F ++    GIQP++
Sbjct: 3    AQLDTKTVYSFMESMISIKRYVSLGKEYGYSSLGIMDEDNLYGAYYFIKECQKQGIQPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +  +D                ++ LL  +  GYQ L++L +   L   GK+    
Sbjct: 63   GLEMTVHHKDE-------------WLNLRLLALSNRGYQNLMKLST---LKMTGKKEWTD 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S+L++      I +       I                                   G
Sbjct: 107  FSSYLED------ICVIVPYYSGIADLDL------------------------------G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            YD Y       L      P++          ED EA  +L A+  +  + + D    +  
Sbjct: 131  YDYYIGVYPDTLQSNFSQPILPLYRVNSFEPEDLEALQMLKAIKENVTLREVD--VQSQQ 188

Query: 252  HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              L     +   F    P+ALEN   + ++ S+ +      LPRF      + ++    E
Sbjct: 189  GLLLPVERLEQPFLEKFPQALENLERVTKKTSYEIDSSL-KLPRF------NPERPAVEE 241

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR +A+ GL+         KG   QDY+ RL+ EL+VI  M F  YFL+V D +++ +  
Sbjct: 242  LRERAIQGLKQ--------KGLWNQDYQARLEDELSVIHEMGFDDYFLVVWDLLRFGRSQ 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ AYAL IT IDP+  +L+FERFLN +R +MPD DID     R E 
Sbjct: 294  GYYMGMGRGSAVGSLVAYALDITGIDPVAKNLIFERFLNRERYTMPDIDIDIPDIYRPEF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I           
Sbjct: 354  IRYVRDRYGSIHAAQIVTYSTFGAKQAIRDVFKRYGVPEYELTAITKKIGFKDTLTT--- 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   +  FR+         +  EI++K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLGFRQLIQGKIEYQKAFEIAKKIEGYPRQTSIHAAGVVISDKNLTDYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             D+ +TQ++   +E  GL+K DFLGL+ LT  QK  + L +   + + +  I  +D ET 
Sbjct: 469  EDMLITQYDAHGVEGNGLLKMDFLGLRNLTFAQKMQELLFETQGIPLRIEDIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E  G  + L+ ++P+  ED++A  SL RPG  D I  +  RK+GKE
Sbjct: 529  ALFAAGKTKGIFQFEQPGAIRLLKRVKPESFEDVVATTSLNRPGASDYIDNFVARKHGKE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK   EM + +
Sbjct: 589  KVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRYAGFSLGKADILRRAMGKKNAAEMHRME 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E FI GA +NG SK  A  +F ++ KFA YGFN+SHA AYA +++Q A+ KTHYP  F  
Sbjct: 649  ESFIQGALENGHSKEQAQEVFAVMEKFAGYGFNRSHAYAYAALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++ P S+NT     K+ D  +Y  L +IKG+    
Sbjct: 709  VMLNYASGD------YILDALEMGFKLTPFSINTVPYQDKLTDKTVYLGLKSIKGMSRDF 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            +  I+E   ++PF S+EDF +R+        +L  LV  G  D F  +R ++L +L  + 
Sbjct: 763  SYWIIE---NRPFSSVEDFITRLPKNYQKLSLLTPLVEVGLFDGFDKNRQKILANLPTLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +         ++  ++FA    +++D          ++  +F+ EQ  LG   S HPL 
Sbjct: 820  IFV--------DELGSLFADSSYSWTDT------EDFSNIEKFKKEQEWLGVGISQHPLL 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                IL K  +           G    +   + S +  +T+KG  + ++  S+     E 
Sbjct: 866  ----ILAKNPLYPIVSLSELSEGQTATVLVEIQSIRVIRTKKGENMAFLKVSDSKTNLEV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TVF 924


>gi|85716686|ref|ZP_01047655.1| DNA polymerase III subunit alpha [Nitrobacter sp. Nb-311A]
 gi|85696526|gb|EAQ34415.1| DNA polymerase III subunit alpha [Nitrobacter sp. Nb-311A]
          Length = 1167

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/1106 (23%), Positives = 451/1106 (40%), Gaps = 126/1106 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PS+  + + +++S L GA      + + +  + P I I D N L   +    +       
Sbjct: 8    PSYAEIGIATNFSFLHGASHPQEYVHQASELRLPVIGIADRNTLAGVVRAYTELE----N 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P +  +  + +   L             P I++       Y RL +L++R  L  + K  
Sbjct: 64   PEVRYKPRLLIGSRLVF-------IDGTPDILIYPRGRHAYGRLCQLLTRGKLAAE-KGE 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+ L  L +     L++LT               +  A K L   ++   D +++    
Sbjct: 116  CRLKLDDLLDFSEGQLLVLTLPHRFE---------TTTALKVLERLRQSRADGVWLAASL 166

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
             +RG D  R +Q+ ++A +  +PL+ATN  L+         DVL  V     +    R  
Sbjct: 167  LYRGDDVRRLAQLDRIAASARMPLLATNEVLYHHPARRPLQDVLTCVREKAAIDAIGRKL 226

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +  + +LK   EM  +F DLP A+  T+  A R  F L       P           K 
Sbjct: 227  VINAERHLKPAHEMEKLFRDLPGAIAETMVFASRIEFTLDQLQYQYPDEPVPPG----KS 282

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L +   AG+E     GA       +D +  L  EL++IA + ++ YFL V D ++W
Sbjct: 283  AQRHLEDLTWAGVEKYFPGGAD------EDLKAALRKELDLIAELNYAHYFLTVHDIVRW 336

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I +  GRGS A S   Y L IT +DP +  LLFERF++ +R+  PD D+DF   R
Sbjct: 337  ARDQDI-LCQGRGSAANSAVCYVLGITSVDPTKVDLLFERFISKERLEPPDIDVDFEHSR 395

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++YV  +YG  R A I T    + ++A+RDVG+AL +       L   +       
Sbjct: 396  REEVMQYVYRRYGRHRAAIIATVIHYRPRSAIRDVGKALGLTEDVTAALADTVWGSWGDD 455

Query: 487  VSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            VS      D++ R+A     +P V   +E++ +L G  RH S H  G V+    L   VP
Sbjct: 456  VS------DAQIRQAGFDPQNPMVRLAVELATELIGFPRHLSQHVGGYVLTQDRLDTYVP 509

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPF 603
            +           +++   ++   ++K D L L  LT ++K  D +A  +G + +L+ IP 
Sbjct: 510  IGNAAMDGRTFIEWDKDDVDAMRMMKVDVLALGMLTCIRKCFDLIADHKGERWELATIPQ 569

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            D+   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y
Sbjct: 570  DEKPVYDMLCRGESLGVFQVESRAQMNMLPRLRPRTFYDLVIEVAIVRPGPIQGDMVHPY 629

Query: 662  NNRK-NGKEKIVSIHP------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
              R+     KI   +P       +  +L+ T GV ++QEQ M+IA + + ++  EA+ LR
Sbjct: 630  LKRRTMDPAKIEYPYPKGGDKNELRNVLERTLGVPLFQEQAMRIAIVAAKFTSEEANGLR 689

Query: 715  RAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RAM   +    +   +E+ ++     G     A N FE +  F  YGF +SHAA++A + 
Sbjct: 690  RAMATFRNIGTIGSFQEKMVNSMIARGYDPVFAKNCFEQIKGFGSYGFPESHAASFAQLV 749

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--- 830
            Y ++W+K  +P  F    +  +        +   DAR+  +++ P  V+       +   
Sbjct: 750  YVSSWLKHFHPDAFCCGLLNSQPMGFYAPAQIVGDARKNGVEVRPLDVSYSFSQNTLEQR 809

Query: 831  --GDNRIYYSLAAIKGVGTTTARHIMEA------------SADKPFDSLEDFCSRVDSKK 876
                + +      I G          E                     L+D C R     
Sbjct: 810  VGEHHAVRLGFRQIDGF--KWVDKDEERGKQQTADLWGRVREGGE---LQDPCLRCPPLH 864

Query: 877  LN-------------------RRVL-----------ESLVFAGALDCF----GYSRMQ-- 900
            L+                   R  L           E +V A     F     +SR    
Sbjct: 865  LSPTRGERAGRAWIGTSNPPPREQLFSSSLTSGDWGERIVTARRHRPFTSIEDFSRATKL 924

Query: 901  ------------LLQSLDNIQKYAQWVEKNRTNK-HENIFAHEKGTFSDKITLEKFSVEN 947
                          +SL   ++ A W  +   +     +F            +       
Sbjct: 925  PKRALILLADADAFRSLGLDRRAALWAVRRLPDDVPLPLFESAAAHELPDEHVAPLPPMP 984

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             S +   + + +     GHP++  + +L +  +    E      G  ++ A +V+ +Q+ 
Sbjct: 985  LSEQVIADYQTVRLSLKGHPMEFLRVMLTRERVASCAEVCHANDGRRVKCAGVVLVRQRP 1044

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +  G  + ++T  +         +P
Sbjct: 1045 GSANG--VVFMTLEDETGIANIVVWP 1068


>gi|297183532|gb|ADI19661.1| DNA polymerase III, alpha subunit [uncultured Alteromonadales
            bacterium HF4000_16C08]
          Length = 1023

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/1036 (24%), Positives = 443/1036 (42%), Gaps = 84/1036 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--KACAAGIQ 68
            +  L   S YS L GA S   ++   +     A+AITD  ++   +            I+
Sbjct: 2    YSELFCQSHYSFLTGASSPAQLVTTASFLGYDALAITDECSVAGVVRAYASITQQRLPIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G                    F    + VLL      Y  L  +++      + K  
Sbjct: 62   LIVGSYFV----------------FDDTFAFVLLCPNKAAYSELCRIITNARRRSK-KGE 104

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++    ++ I    LI L        D                   +      ++  QR
Sbjct: 105  YQLAEWDMRTIRHCKLIWLPSTQQAHDDYW------------AKWLSQHSAIHTHIGAQR 152

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
               G D +R +   +LA  ++ P+VA    L    +D     VL A    + VS   R  
Sbjct: 153  LLDGNDHHRFATYNRLAQHYDFPVVACTGVLMHHSDDLPLQHVLHATREHSTVSNLGRHA 212

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            ++  +  L+  +++  ++ +    ++NT  +A  C F L       P     E       
Sbjct: 213  ISNAERSLRPINKIQKLYPE--RWIDNTSVLAGSCHFSLNEVRYQYP----AELVPTGYT 266

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     G+ +R  +G   K       R  ++ E+ +I    ++ +FL + D +Q+
Sbjct: 267  AIAYLRQCVEKGIHIRFPEGLSKK------VRAIIEKEMKLIEEQDYAYFFLTLYDIVQF 320

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+  I    GRGS A SV  Y L IT +DP + ++LFERF++ +R   PD D+DF   R
Sbjct: 321  AKQQGILY-QGRGSAANSVVCYCLEITAVDPRQINVLFERFISKERDEPPDIDVDFEHQR 379

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+E+I+Y+  KYG ER A   T    + K+A +D G+AL    SQ+  + K I N     
Sbjct: 380  REEIIQYIYKKYGRERTAIAATVICYRFKSAFKDAGKALGFNESQLSFVVKQI-NRRDSV 438

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  Q+  ++   +     D  V +L+ I+++L G  RH S H  G VI   PL +LVP+ 
Sbjct: 439  IPWQSQLEELGLKG---DDKRVKQLIHITEQLLGTPRHLSQHVGGFVISSGPLYELVPVE 495

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV---DLSLIPF 603
                 +  + Q++   IE  GL+K D L L  L+ ++++   +                 
Sbjct: 496  NAAMPERTIIQWDKDDIETLGLLKVDVLALGMLSAIRRTFALINTHYPVPVSIPFITKLG 555

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            DD + + ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI  D +  Y
Sbjct: 556  DDPQVFDMICKADTVGVFQIESRAQMSMLPRLKPRCYYDLVVQIAIVRPGPIQGDMVHPY 615

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R++G E I      +  +L  T GV I+QEQV+Q+A + +G+S  EAD LRRAM   K
Sbjct: 616  LLRRHGSESISYPSEEVKDVLSRTMGVPIFQEQVIQLAMVAAGFSGGEADQLRRAMASWK 675

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                + + +++ I G    G  +  A N+FE +  FA YGF +SH+A++AV++Y + W+K
Sbjct: 676  KDGRIFEFRDKLIKGMVARGYDENFAHNLFEQIKGFAGYGFPESHSASFAVLAYVSCWLK 735

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY---- 836
             ++PVEF  A +           +  QDA++  I ++PP +N  C + +V  ++ Y    
Sbjct: 736  FYFPVEFYVALLNSWPMGFYSPSQLVQDAKRHKITVIPPCINQSCYEHQVVYHKGYKKIQ 795

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              LA IKG+G  TA  +      + F  +E     + S  + R  LE+L  AGA +    
Sbjct: 796  LGLAIIKGLGEATAHELCRQRPHEGFTRIET----IQSLNIRRDELEALASAGAFNALTG 851

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R Q    +               +   ++   +    +D + +      N +     + 
Sbjct: 852  NRYQARWRM--------------MDNQASLPLFDDCPINDSLAITP----NDADNLLEDY 893

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
               G     HP+ +         I   ++       + +++   V  +Q   T  G  + 
Sbjct: 894  AATGLSTHDHPVALLHREKSLNYITTADKLHGKTHKSVVKVLGCVTGRQAPGTAAG--VT 951

Query: 1017 WVTFSEPAKEYEANFF 1032
            ++T  +         +
Sbjct: 952  FLTLEDHTGNMNVVVW 967


>gi|258614449|ref|ZP_05712219.1| DNA polymerase III, alpha subunit [Enterococcus faecium DO]
          Length = 1013

 Score =  733 bits (1893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/869 (33%), Positives = 463/869 (53%), Gaps = 40/869 (4%)

Query: 174  FKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             + +F    Y+ L  +   D+  E    Q        L A +    L +E+  A +V+  
Sbjct: 52   LENVFTRNFYIGLTENT-PDQLPEW--YQYVIKENYSLCALHPIASLQQEELFALEVMKH 108

Query: 234  VAHSTVVSQKDR---PRVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVH 288
            +   + +  ++      +T + YL +  EM+  F  + L +A+     +A   SF  Q H
Sbjct: 109  IKEGSQIPLENLSASLPLTANVYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFH 168

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              +LP +         K+    LR    + +E R+         + ++Y++RLD+EL+VI
Sbjct: 169  QKLLPHYPVPNG----KQAGEYLRELCYSQVERRITD-------YTKEYQERLDYELSVI 217

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F  YFLIV D + +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFL
Sbjct: 218  HQMGFDDYFLIVWDVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFL 277

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R +MPD D+D   +RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   + 
Sbjct: 278  NPERFTMPDIDLDIPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLS 337

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
             S+ +R  K IPN     ++ QA     +  E   A      L + +  LEGL RH STH
Sbjct: 338  QSEANRWSKAIPNQLKITLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTH 396

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+VI D+ L +LVP+ R       +TQ+ M  +E  GL+K DFLGL+ L+++  +L  
Sbjct: 397  AAGVVISDKNLLELVPLQRGSDEAF-LTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKA 455

Query: 589  LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + +  G ++ L  IP +D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ 
Sbjct: 456  VKRVEGYEIRLKEIPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRLDPENIEDIAAVN 515

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +LYRPGP+ NI  +  RK GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L
Sbjct: 516  ALYRPGPMQNIDTFIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTL 575

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             ++D+LRRA+ KK K+ +D++K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA 
Sbjct: 576  GQSDILRRAVSKKKKDVLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAF 635

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AY+ + +Q A++K H+P  F  + M     N  K+K++  +AR+  +++  PS+N     
Sbjct: 636  AYSFVGFQMAYLKAHHPGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSS 695

Query: 828  FK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F+ V    I + L AIKG+       I+     + PF S++ F  R+D + L   +L+SL
Sbjct: 696  FELVNKEEIRFGLTAIKGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSL 755

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
               G  D    +R QL+  L+   +   +     +    ++           +  E+ + 
Sbjct: 756  TAVGVFDELSPNRKQLMLDLEGKIQNIVY-----SGGSLDLLGIMA------LKEEEVAD 804

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSK 1004
                 R + E+  LG Y SGHP + +     ++ +    + +  I     + L  M+   
Sbjct: 805  YTLEERLKLEEEYLGIYLSGHPAEGF----DRLRLAKQVQLITDIVPNQPVNLLVMIKEV 860

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++ +T+KG  + +V  ++ + E     FP
Sbjct: 861  REIRTKKGELMAFVEGTDSSGEISVTVFP 889


>gi|302550406|ref|ZP_07302748.1| DNA polymerase subunit III [Streptomyces viridochromogenes DSM 40736]
 gi|302468024|gb|EFL31117.1| DNA polymerase subunit III [Streptomyces viridochromogenes DSM 40736]
          Length = 1173

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1059 (26%), Positives = 472/1059 (44%), Gaps = 71/1059 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL   S +SL  GA     + ++ +     A+A+TD + L  A+ F++    AG++
Sbjct: 2    PGFTHLHTVSGFSLRYGASHPERLAERASGRGMDALALTDRDTLAGAVRFAKACAKAGVR 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFP---------TVPSIVLLVSTA-EGYQRLIELVSR 118
            P+ G  L +   +  +   + +   P         + P +  L      G+  L  LVS 
Sbjct: 62   PVFGADLAVAGVEPPEPGPRSRRRTPVRGGAFVDESAPRVTFLARDGGRGWGELCRLVSA 121

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             +  +         L W +    EGL +L G  S  + RA        A + L+ +++++
Sbjct: 122  AHEAEGA-----PLLPWGRN-HAEGLTVLLGPDS-EVGRALAAGRPDRAARLLVPWREVY 174

Query: 179  GDRLYVNLQRHR----GYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            GD L +    H     G    R + + V  A    +  V +N   +         DVL A
Sbjct: 175  GDALRLEAVWHGRKGTGPGSLRLAARTVGFAAEQRIRPVLSNAVRYADPGLGPVADVLDA 234

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARRCS 282
                 V     +   + + +LK    M ++   + EA           +E T   A  C 
Sbjct: 235  AR-RLVPVDPAKELDSGEAWLKGAEAMFAVAERIVEAAGFRRDTAHRLVEQTEAAAAECL 293

Query: 283  FILQVHAPILP-RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQR 340
               +    I    F E              R  A   L  R   G + +GY   ++Y +R
Sbjct: 294  VDPEDDLGIGTVHFPEPHLVGAG-------RRTAQRTLASRAVAGMVLRGYDRRREYWER 346

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            +  EL++IA   F+ YFL VA  +   ++  + V   RGSGAGS+  + L I   DP+  
Sbjct: 347  MHHELDIIAHHGFASYFLTVAQVVDDVREMGVRVA-ARGSGAGSLVNHLLGIAHADPVEH 405

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LL ERFL+ +R+ +PD DID    RR EV R + +++G ERVA +    + + + A+RD
Sbjct: 406  RLLMERFLSKERVVLPDIDIDVESARRLEVYRAIIDRFGTERVATVAMPETYRVRHAIRD 465

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            VG AL M  +++DR+ K  P+  A      A+ +    R          +L E+ + L+ 
Sbjct: 466  VGAALSMDPAEIDRVAKSFPHIRARDARA-ALEELPELRALAGEKEKYGKLWELVEALDA 524

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R  + H  G+++ D  L    P+        P++QF+   +E  GL+K D LG++  +
Sbjct: 525  LPRGVAMHPCGVLLSDASLLARTPVMPTSGEGFPMSQFDKDDVEDLGLLKLDVLGVRMQS 584

Query: 581  LLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
             +  +++ + +  GV+VDL  +   D ETY L+ +  TLG FQ+ES G R  +  +QP  
Sbjct: 585  AMAHAVEEVRRVSGVRVDLDALAPGDPETYRLVQSTETLGCFQIESPGQRDLVGRLQPAT 644

Query: 640  IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
              D++  +SL+RPGP+  D +  +   ++G+  I   HP ++  L++T GV+++ EQ++ 
Sbjct: 645  FHDLVVDISLFRPGPVAADMVRPFIEARHGRAPIRYPHPDLEEPLRDTYGVVVFHEQIID 704

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            I  +++G    EAD +RR +     E   + K  F   A+  G         +E++  F 
Sbjct: 705  IVDIMTGCGRGEADRVRRGLS--DPESQARIKVWFAQHAAARGYDAETIQRTWEIVEAFG 762

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+  + ++
Sbjct: 763  SYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRGVPVL 821

Query: 818  PPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
            P  VN   V  ++    G   +  +L+ + G+    A  I E    +P+DSL DF  R  
Sbjct: 822  PLDVNKSGVAHRIELVSGTWGLRLALSDVHGISEAEAARIAE---GQPYDSLVDFWER-- 876

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
              + +R + + L   GALD FG +R  L   L  + +      +        +     G 
Sbjct: 877  -GRPSRPLAQRLAQVGALDAFGANRRDLQLHLTELHR----GARGGGGGQLPLAG---GR 928

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
             +    L   +   SS R   E  VL    S + +D ++  L ++G+           G 
Sbjct: 929  RTAPAGLPDLT---SSERLSAELGVLSMDASRNLMDDHRAFLDELGVVSARRLREARHGE 985

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +A    + Q    R G R+ + T  +     +  FF
Sbjct: 986  TVLVAGAKAATQTPPIRSGKRVIFSTLDDGTGLVDLAFF 1024


>gi|306829373|ref|ZP_07462563.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus mitis
            ATCC 6249]
 gi|304428459|gb|EFM31549.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus mitis
            ATCC 6249]
          Length = 1033

 Score =  732 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/1023 (29%), Positives = 494/1023 (48%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +AI D +NL+ A  F +     GIQP+I
Sbjct: 3    AQLDTKTVYSFMESVVSIEKYVHTAKDYGYSHLAIMDVDNLYGAYHFLEVTRKYGIQPLI 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + +                S   L  + +GYQ L++L +   L   G+++   
Sbjct: 63   GLEITLIIDE-------------KAISFRFLALSTKGYQELMKLST---LKMTGRKNWSD 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L+++      ++     G ID+    +                    ++ +     
Sbjct: 107  FTSHLEDVA-----VIVPYYDG-IDQLDLGHDY------------------FIGV----S 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D ++E            P++         +ED +   +L AV  +  + + D    +  
Sbjct: 139  PDTHQEV--------FTKPILPLYQVNSFEKEDIQVLQILSAVKDNVSLREVD--VHSQQ 188

Query: 252  HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                  S++ + F    P++L N  ++    S+ L      LPRF  +            
Sbjct: 189  GIFLPASDLEARFKNRFPQSLANLQDLIENVSYQLDPSL-KLPRFNPE------------ 235

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R  QG IAK   +  Y++RL+ EL VI  M F  YFL+V D +++ +  
Sbjct: 236  --RPAVEELRERAEQGLIAKELTSVLYQERLNEELAVIHDMGFDDYFLVVWDLLRFGRSQ 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ AY+L IT IDP+  +L+FERFLN +R +MPD DID     R E 
Sbjct: 294  GYYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDLYRPEF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV+++YG + VAQI+T+ +  AK A+RDV +   +P  ++  + K I           
Sbjct: 354  IRYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKISFRDTLTT--- 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI++K+EG  R  S HAAG+V+ D+ L+  +P+     
Sbjct: 411  AYEKNLQFRQVINSKIEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDLTDYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
             D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + LA+  GV + +  I  +D ET 
Sbjct: 469  EDMLITQYDAHGVEANGLLKMDFLGLRNLTFVQKMQELLAESEGVHLKIEEIDLEDSETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L +   T GIFQ E  G  + L+ ++P   E+++A  SL RPG  D I  +  RK+GKE
Sbjct: 529  ALFSAGNTKGIFQFEQPGAIRLLKRVKPQVFEEVVATTSLNRPGASDYIDNFVARKHGKE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  + P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK  +EM   K
Sbjct: 589  KVTVLDPTLEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAKEMHLMK 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E FI+GA K G S+  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  EDFIAGAVKLGHSEEKANQVFAVMEKFAGYGFNRSHAYAYSSLAFQLAYFKTHYPAIFFQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA Q    + P ++N+     K+   +IY  L  IKG+    
Sbjct: 709  VMLNYSSSD------YIVDALQMGFDVAPLAINSIPYHDKIAQKKIYLGLKTIKGMPRDF 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            +  I+E   ++PF S+EDF +R+        +L  LV  G  D F  +R ++L +L N+ 
Sbjct: 763  SYWIIE---NRPFSSVEDFVTRLPKNYKKLSLLSPLVELGLFDDFDKNRQKILVNLPNLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             + +        +   +FA    ++++            + +F  EQ ++G   S HPL 
Sbjct: 820  VFVE--------ELGGLFADASYSWTEA------DDFTEAEKFYKEQELIGVGISAHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 L K  +           G+++ L   V   +  +T+KG  + ++   +   + + 
Sbjct: 866  ----TLAKQALYSTTPIATLTEGSHVTLLVEVQKIKVIRTKKGENMAFLQVHDSKSKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TVF 924


>gi|119900246|ref|YP_935459.1| DNA polymerase III subunit alpha [Azoarcus sp. BH72]
 gi|167016908|sp|A1KCL7|DNAE2_AZOSB RecName: Full=Error-prone DNA polymerase
 gi|119672659|emb|CAL96573.1| DNA polymerase III, alpha subunit, putative [Azoarcus sp. BH72]
          Length = 1064

 Score =  732 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/1056 (25%), Positives = 437/1056 (41%), Gaps = 80/1056 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--KACAA 65
            +P +  L   S+YS L GA     ++ +  A     +AITD  +L  A+           
Sbjct: 3    TPPYAELHCLSNYSFLRGASHPEELVARAWALGYQGLAITDECSLAGAVRAHTGLAELRR 62

Query: 66   GIQPIIGCQLDI-------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
             ++                +  +  ++    +        +VLL     GY  L  L++ 
Sbjct: 63   DLRAAADAPEASAQDRLLAERAEQFRLVFGAEFRLACGLKLVLLAKNRAGYGNLSALITL 122

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
                 + K S R+  + L          ++   + P   A +   +  + +    F + F
Sbjct: 123  ARQRSE-KGSYRLVRADLD--------AISPAGAVPDCYALWLPDAASSAEDAHWFARRF 173

Query: 179  GDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            G+R ++ ++ H G D      +  +LA    LP +A  +            D L A+   
Sbjct: 174  GERGWLAVELHSGADDAAWLGRTAELAAAAGLPRLAAGDVHMHLRGRRPLQDTLTAIRLG 233

Query: 238  TVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
            T V +         + +L++   +  ++            +A  C F L       P+ I
Sbjct: 234  TTVFEAGTALHPNGERHLRHPLRLARLYPAELLEAA--ARLALACDFQLDTLRYEYPQEI 291

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                +       + LR +  AGL  R  QG              ++ EL +I  + +  +
Sbjct: 292  VPAGE----TPASYLRRETQAGLARRYPQGV------PPAIADNVEQELALIIELGYEPF 341

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D + +A+   I +  GRGS A S+  YAL IT++DP R SLLF RF++ +R   P
Sbjct: 342  FLTVYDIVCFARDEGI-LCQGRGSAANSIVCYALGITEVDPARASLLFGRFISRERDEPP 400

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  DRR+ VI+Y+  KYG +R A   T    + + ALRD GRAL     Q+D L 
Sbjct: 401  DIDVDFEHDRRETVIQYIYGKYGRDRAALAATVIRYRTRGALRDAGRALGFGQPQIDALA 460

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            + +                +R  E  L  A P V + L+++  L G  RH S H  G VI
Sbjct: 461  RSLAWWDKRD------QLPARLIELGLDPASPRVAKWLDLTGMLIGFPRHLSQHVGGFVI 514

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRG 593
               PL +LVP+      +  V Q++ + +E  GL+K D L L  L+++++SL+ +  +RG
Sbjct: 515  SRGPLGRLVPIENAAMPERSVIQWDKEDLEALGLLKVDVLALGMLSVIRRSLELVGRRRG 574

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L  IP  D  T+ +L    ++G+FQ+ES      L  ++P    D++  V++ RPG
Sbjct: 575  APFALPHIPPKDAATFDMLCAADSVGVFQVESRAQMAMLPRLRPRQFYDLVVQVAIVRPG 634

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPL------IDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            PI   +V+    N  +   S   L      +  +L+ T GV I+QEQVM++A++ +G++ 
Sbjct: 635  PIQGDMVHPYLTNRADPAASARTLARLPADVRAVLERTLGVPIFQEQVMKLAEVAAGFTP 694

Query: 708  SEADVLRRAMGKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             EAD LRRAM     K  +++ K++   G    G     A  +   +  F +YGF +SHA
Sbjct: 695  GEADQLRRAMASWRQKGHIERFKQKLRDGMKARGHDSDFADALCRQIEGFGEYGFPESHA 754

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A++A+++Y +AW+K H P  FL   +  +        +  QDAR+  +++ P  V     
Sbjct: 755  ASFALLAYASAWLKRHEPEAFLCGLLNSQPMGFYAPAQLLQDARRHGVEVRPVDVTASAW 814

Query: 827  DFKVG----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            D  +              +   L  I G     A  + EA A  PF    D   R     
Sbjct: 815  DATLEDLPADPDAGRRPAVRLGLREISGFPEAAALRVAEARAAAPFADTNDLARRA---A 871

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            L RR L+ L  AGAL      R Q    +  +                ++F       + 
Sbjct: 872  LQRRELDLLAAAGALQALAGHRRQAAWQVAGVC------------LQGDLFDAAPPPEAA 919

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
                        +     +    GF    HPL + +  L +           T     +R
Sbjct: 920  VALA----APQEAEELLADYAATGFSLGRHPLALLRARLARGRFLQAAALARTPDRALVR 975

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +A +V  +Q+  T +G  + +VT  +         +
Sbjct: 976  VAGIVTGRQRPGTAQG--VIFVTLEDETGSANVVVY 1009


>gi|270292875|ref|ZP_06199086.1| DNA polymerase III, alpha subunit [Streptococcus sp. M143]
 gi|270278854|gb|EFA24700.1| DNA polymerase III, alpha subunit [Streptococcus sp. M143]
          Length = 1033

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/1023 (29%), Positives = 484/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +AI D +NL+ A  F +     GIQP+I
Sbjct: 3    AQLDTKTVYSFMESVVSIEKYVQTAKEYGYSHLAIMDVDNLYGAYHFLEVTRKQGIQPLI 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + +                S   L  + +GYQ L++L +   L   G+++   
Sbjct: 63   GLEMTLIIDE-------------KALSFRFLALSTKGYQELMKLST---LKMTGRKNWSD 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L+++               +   +F    Q+          L  D  ++ +     
Sbjct: 107  FTSHLEDVA--------------VIVPYFEGIEQL---------DLGHD-YFIGISPDTP 142

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             + +              P++         +ED +   +L A+  +  + + D    +  
Sbjct: 143  QEVFTR------------PILPLYQVNSFEKEDIQVLQILSAIKDNVSLREVDL--HSQQ 188

Query: 252  HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                  S++ + F    P+AL N   +     + L      LPRF  +            
Sbjct: 189  GIFLPASDLEARFKNHFPQALANLQGLIENVDYQLDPSL-KLPRFNPE------------ 235

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R  QG   KG  +  Y +RL+ EL VI  M F  YFL+V D +++ +  
Sbjct: 236  --RPAVEELRERAEQGLSDKGLTSAIYHERLNEELAVIHDMGFDDYFLVVWDLLRFGRSQ 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ AY+L IT IDP+  +L+FERFLN +R +MPD DID     R E 
Sbjct: 294  GYYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDLYRPEF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV+++YG + VAQI+T+ +  AK A+RDV +   +P  ++  + K I           
Sbjct: 354  IRYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKISFRDTLTT--- 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI++K+EG  R  S HAAG+V+ D+ L+  +P+     
Sbjct: 411  AYEKNLQFRQLINSKIEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDLTDYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
             D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + LA+  GV + +  I  +D  T 
Sbjct: 469  EDMLITQYDAHGVEANGLLKMDFLGLRNLTFVQKMQELLAESEGVHLKIEEIDLEDKATL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L +   T GIFQ E  G  + L+ +QP   E+++A  SL RPG  D I  +  RK+GKE
Sbjct: 529  ALFSAGNTKGIFQFEQPGAIRLLKRVQPQVFEEVVATTSLNRPGASDYIDNFVARKHGKE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  + P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK  +EM   K
Sbjct: 589  KVTVLDPALEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAKEMHLMK 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E FISGA K G S+  A   F ++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  EDFISGAMKLGHSEEKANQFFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFFQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +           ++  DA Q   Q+ P ++N+     K+   +IY  L AIKG+    
Sbjct: 709  VMLNYSS------SEYIVDALQMGFQVAPLAINSIPYHDKIAQKKIYLGLKAIKGMPRDF 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            +  I+E   ++PF S+EDF +R+        +L  LV  G  D F  +R ++L +L N+ 
Sbjct: 763  SYWIIE---NRPFSSVEDFVTRLPKNYKKLSLLTPLVELGLFDEFDKNRQKILVNLPNLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             + +        +   +FA    ++++            + +F  EQ ++G   S HPL 
Sbjct: 820  VFVE--------ELGGLFADTNYSWTEA------DDFTEAEKFYKEQELIGVGISPHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 L K  +           G    L   +   +  +T+KG  + ++   +     + 
Sbjct: 866  ----TLAKQALYPTTPITNLTEGAQATLLVELQKIKVIRTKKGESMAFLQVHDSKSRMDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TVF 924


>gi|114766756|ref|ZP_01445693.1| DNA polymerase III, alpha subunit, putative [Pelagibaca bermudensis
            HTCC2601]
 gi|114541013|gb|EAU44070.1| DNA polymerase III, alpha subunit, putative [Roseovarius sp.
            HTCC2601]
          Length = 1078

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/1036 (24%), Positives = 424/1036 (40%), Gaps = 84/1036 (8%)

Query: 33   LDKIAADQQPAIAITDTNNLFSALEFSQKAC----AAGIQPIIGCQLDIDMQDNLKMTNQ 88
            + +       A+AITD N+L   +            A     I      D          
Sbjct: 1    MARATELGLSALAITDRNSLAGMVRAWSALKTLRDEAEQALRIRSTERTDPSSRQPEAGT 60

Query: 89   GK---TPFPTVPSIVLLVS---------------TAEGYQRLIELVSRMYLLDQGKQSVR 130
             +        +P ++                       Y+RL  L++      + K   +
Sbjct: 61   QEIAVRAGQLLPRLITGCRLVLEDEPVEWLALPTDRAAYERLSRLLTLGKRRAE-KGRCQ 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            + L+ L+E    GLI++                   A   L   ++ F   +++     +
Sbjct: 120  LHLADLEE-HGRGLILIALPPK----------DLGQATAPLRRLQRRFPGHVFLGAPPRY 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRV 248
             G D+       +LA     P+VA  + L       +  DVL  +     +     R   
Sbjct: 169  DGSDQAWFDACAKLALRMNTPMVAVGDVLMHRAARRQLADVLTCLREGCTIDAIGTRALP 228

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +  LK  ++M  ++   P AL  T+EIA RC+F L   +   P  I        +  +
Sbjct: 229  NAERRLKPATDMARLYRRHPAALRRTLEIAARCAFDLGELSYEYPDEIAD-----GETPQ 283

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L   A AGLE R  +GA  K          +  EL V+  + F+ YFL V D + +A+
Sbjct: 284  ARLERLAHAGLERRYPEGAPDK------VFDLMAKELRVVEELGFAAYFLTVNDIVAFAR 337

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I +  GRGS A SV  Y L ITD+ P    ++FERF++  R   PD D+DF  +RR+
Sbjct: 338  SRGI-LCQGRGSAANSVLCYLLGITDVSPDLIGMVFERFISRYRGEPPDIDVDFEHERRE 396

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+++  KYG  R     T    + +AA+R+VG+ + +       L   I         
Sbjct: 397  EVIQWIYEKYGRHRAGLCATVIHFRTRAAIREVGKVMGLSQDVTAALSGQIWGQSNGG-- 454

Query: 489  LQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                AD  R RE  L   D  + + + +  ++ G  RH S H  G +I    L +L P+ 
Sbjct: 455  ----ADPGRIRELGLDPGDRRLAQTIGLIGEIIGFPRHLSQHVGGFIITRGRLDELCPIE 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                    V +++   I+  G++K D L L  LT ++K+   L Q   ++  L  +P +D
Sbjct: 511  NAAMEGRTVIEWDKDDIDALGILKVDVLSLGMLTCIRKAFALLDQHEGLRHTLDTVPQED 570

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
              TY +L     +G+FQ+ES      L  M+P    D++  V++ RPGPI   +   Y  
Sbjct: 571  EATYRMLQKADAVGVFQVESRAQMNFLPRMKPATFYDLVIEVAIVRPGPIQGGMVQPYIR 630

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R+ G E+     P +  + ++T GV ++QEQ MQIA + +GYS  EAD LRR++   +  
Sbjct: 631  RRQGLERPEPFGPALSEVTRKTLGVPLFQEQAMQIAVVGAGYSAEEADRLRRSLASFRRM 690

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              + + ++RF  G  KNG ++  A   F  +  FADYGF +SHAAA+A+++Y ++W+K H
Sbjct: 691  GTIGEHRDRFTRGMLKNGYTREAAERCFTQIEGFADYGFPESHAAAFAMLTYVSSWLKCH 750

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYY 837
            +P  F  A +  +        +  +D R   I++ P  VN    D  +     G   +  
Sbjct: 751  HPAIFGCALLNSQPMGFYAPAQIVRDLRDHGIELRPICVNHSQWDNVLERRADGRLALRL 810

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
                IKG     A  I+ A  +  +   E    R         VLE L  A A    G +
Sbjct: 811  GFRQIKGFREEDAGWIVAARGNG-YPDPESLWLRAGLL---PGVLERLAEADAFAGMGLT 866

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R   L  +  I+  A             +FA        +    +    +       +  
Sbjct: 867  RRDALWQVRAIRSPA----------PLPLFADPLDGEGLREPDVELPPMHLGEEVVEDYV 916

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             +      HP++  +P +    I  + E  AT     + +  +V+++Q+  T  G  + +
Sbjct: 917  SMRLSLRAHPMEFLRPDIP--DIVPHSELAATPL-RRLSVCGVVITRQRPGTASG--VIF 971

Query: 1018 VTFSEPAKEYEANFFP 1033
            VT  +         +P
Sbjct: 972  VTLEDETGVSNVVVWP 987


>gi|293365265|ref|ZP_06611982.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus oralis
            ATCC 35037]
 gi|307703806|ref|ZP_07640747.1| DNA polymerase III subunit alpha [Streptococcus oralis ATCC 35037]
 gi|291316715|gb|EFE57151.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus oralis
            ATCC 35037]
 gi|307622641|gb|EFO01637.1| DNA polymerase III subunit alpha [Streptococcus oralis ATCC 35037]
          Length = 1033

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/1023 (29%), Positives = 483/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +AI D +NL+ A  F +     GIQP+I
Sbjct: 3    AQLDTKTVYSFMESVVSIEKYVQMAKEYGYSHLAIMDVDNLYGAYHFLEVTRKYGIQPLI 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +                    S+  L  + +GYQ L++L +   L   G+++   
Sbjct: 63   GLEMTL-------------IKDKENISLRFLALSTKGYQELMKLST---LKMTGRKNWSD 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L+++               I   +F    Q+          L  D  ++ +     
Sbjct: 107  FTSHLEDVA--------------IVVPYFNGVEQL---------DLGVD-YFIGVSPDTP 142

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             +                P++         +ED +   +L AV  +  + + D    +  
Sbjct: 143  QE------------VFTSPILPLYQVNSFEKEDIQVLQILSAVKDNVSLREVDL--HSQQ 188

Query: 252  HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                  S++ + F    P+AL N   +    S+ +      LPRF  +            
Sbjct: 189  GIFLPASDLEARFKNRFPQALANLQGLIENVSYQIDPSL-KLPRFNPE------------ 235

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R  QG   KG  +  Y +RL+ EL VI  M F  YFL+V D +++ +  
Sbjct: 236  --RPAVEELRERAEQGLSDKGLTSAIYHERLNEELAVIHDMGFDDYFLVVWDLLRFGRSQ 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ AY+L IT IDP+  +L+FERFLN +R +MPD DID     R E 
Sbjct: 294  GYYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDLYRPEF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV+++YG + VAQI+T+ +  AK A+RDV +   +P  ++  + K I           
Sbjct: 354  IRYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKISFRDTLTT--- 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI++K+EG  R  S HAAG+V+ D+ L+  +P+     
Sbjct: 411  AYEKNLQFRQIINSKIEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDLTDYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
             D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + LA+  GV + +  I  +D ET 
Sbjct: 469  EDMLITQYDAHGVEANGLLKMDFLGLRNLTFVQKMQELLAESEGVHLKIEDIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E  G  + L+ +QP   E+++A  SL RPG  D I  +  RK+GKE
Sbjct: 529  ALFVAGNTKGIFQFEQPGAIRLLKRVQPQVFEEVVATTSLNRPGASDYIDNFVARKHGKE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  + P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK  +EM   K
Sbjct: 589  KVTVLDPALEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAKEMHLMK 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E FI+GA K G ++  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  EDFITGAMKLGHTEEKANQVFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFFQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA Q   ++ P ++N+     K+   +IY  L AIKG+    
Sbjct: 709  VMLNYSSSD------YIVDALQMGFEVAPLAINSIPYHDKIAQKKIYLGLKAIKGMPRDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            +  I+E   ++PF S+EDF +R+        +L  LV  G  D F  +R + L +L N+ 
Sbjct: 763  SYWIIE---NRPFSSIEDFVTRLPKNYKKLSLLTPLVELGLFDEFDKNRQKNLVNLPNLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             + +        +   +FA    ++++            + +F  EQ ++G   S HPL 
Sbjct: 820  VFVE--------ELGGLFADTNYSWTEA------DDFTEAEKFYKEQELIGVGISPHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 L K  +           G    L   V   +  +T+KG  + ++   +     + 
Sbjct: 866  ----TLAKQALYPTTPITNLTEGAQATLLVEVQKIKVIRTKKGESMAFLQVHDSKSRMDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TVF 924


>gi|297195254|ref|ZP_06912652.1| DNA polymerase III alpha subunit [Streptomyces pristinaespiralis ATCC
            25486]
 gi|197719664|gb|EDY63572.1| DNA polymerase III alpha subunit [Streptomyces pristinaespiralis ATCC
            25486]
          Length = 1175

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/1088 (26%), Positives = 473/1088 (43%), Gaps = 95/1088 (8%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            + P F HL   S +S+  GA     +  + A     A+A+TD + L  A+ F       G
Sbjct: 6    RMPYFTHLHTVSGFSVRYGASHPERLAGRAAERGMDALALTDRDTLAGAVRFVTACAKEG 65

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTP--------FPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++P+ G  L +  +   +   + +            + P  V L     G+  L  +V+ 
Sbjct: 66   VRPLFGVDLAVGERARQEGPAERRRTPVRGGAFVDESAPRTVFLARDRRGWADLCRMVTA 125

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             +  D      R  L    +   +GL +L G SS  +  A        A K L  +++ +
Sbjct: 126  AHATD-----PRSPLLPWDDNHGDGLTVLLGPSS-EVGGALAAGRPDRAAKLLAPWRERY 179

Query: 179  GDRLYVNLQRHRGYDR-----YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            GDRL + +  H G           ++ + LA    +  V TN   +         DVL A
Sbjct: 180  GDRLRLEVVHHGGGGTGPGSLRHAARTLGLAAEQGVRAVLTNAVRYADPGQGPVADVLDA 239

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARRCS 282
                 V     +   + + +LK+ + M  +   + EA           L  T E A  C 
Sbjct: 240  AR-RLVPIDPRKGLDSGERWLKDPAAMAVLAGRVAEAAGFRRELAHRLLAMTEETAAECL 298

Query: 283  FILQVHAPILP-RFIEKECDDIQK-EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
               +    I    F E      +    +  L ++A AG+ +R   G        ++Y +R
Sbjct: 299  VDPEDDLGIGSVHFPEPALVGAEYRTAQRVLASRAAAGMVLRGYDG-------RREYWER 351

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            +  EL++IA   F+ YFL VA  +   K   I V   RGSGAGS+  + L I   DP+  
Sbjct: 352  MHHELDIIAHHGFASYFLTVAQVVDDVKGMGIRVA-ARGSGAGSLVNHLLGIAHADPVEH 410

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LL ERFL+  R  +PD DID    RR EV R +  ++G ERVA +    + + + A+RD
Sbjct: 411  GLLMERFLSKRRRVLPDIDIDVESARRLEVYRKIIGRFGEERVATVAMPETYRVRHAIRD 470

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            VG AL M  +++D+L K  P+  A      A+A+    RE        +R+ E+ + L+ 
Sbjct: 471  VGAALSMDPAEIDKLAKSFPHIRARDARA-ALAELPELREVATESKRRERMWELVEALDA 529

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R  + H  G+++ D  L    P+        P++QF+   +E+ GL+K D LG++  +
Sbjct: 530  LPRGVAMHPCGVLLSDASLLTRTPVVPTSGEGFPMSQFDKDDVEELGLLKLDVLGVRMQS 589

Query: 581  LLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
             +  ++  + +  G +VD+  +P  D  TY L+ +  TLG FQ+ES G R  +  +QP+ 
Sbjct: 590  AMAHAVAEVRRATGEEVDVDAVPPGDPATYRLIRSTETLGCFQIESPGQRDLVGRLQPET 649

Query: 640  IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
              D++  +SL+RPGP+  D +  +   ++G+      HP ++  L++T GV+++ EQ+++
Sbjct: 650  FGDLVVDISLFRPGPVAADMVRPFIEARHGRAPARYPHPDLEGPLRQTYGVVVFHEQIIE 709

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            I  +++G    EAD +RR +     E   K K  F   A   G +  +    +E++  F 
Sbjct: 710  ILDIMTGCGRDEADRVRRGLS--DPESQGKIKTWFARNAGAKGYAPEVIGRAWEIIEAFG 767

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+  + ++
Sbjct: 768  SYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRGVPVL 826

Query: 818  PPSVNTPCVDFKV---------------------------------GDNRIYYSLAAIKG 844
            P  VN   V  ++                                 G   +  +L+ + G
Sbjct: 827  PLDVNRSAVAHRIELVSDDVSSRASAGAGGGSRGGSVPAADARSGQGRWGLRLALSDVHG 886

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +    A  I    A +P+ SL DF  R      +R V E L   GALD FG +R  LL  
Sbjct: 887  ISEAEAARI---EAGQPYSSLLDFWQRA---CPSRPVAERLAQVGALDAFGANRRDLLLH 940

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L  + +      +     + +     +G  +  + L        + R   E  VLG   S
Sbjct: 941  LAELHRT-----RRGAASYGSQLPLAQGQKTAPVGLPDL---GDAERLSAELGVLGMDAS 992

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             H +  +   L ++G+   +       G  + +A    + Q    R G R+ + T  + +
Sbjct: 993  RHLMADHHAFLAELGVLSAQRLRDAPHGRTVLVAGAKAATQTPPIRSGRRVIFTTLDDGS 1052

Query: 1025 KEYEANFF 1032
               +  FF
Sbjct: 1053 GLVDLAFF 1060


>gi|306825369|ref|ZP_07458709.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus sp. oral
            taxon 071 str. 73H25AP]
 gi|304432307|gb|EFM35283.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus sp. oral
            taxon 071 str. 73H25AP]
          Length = 1033

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/1023 (29%), Positives = 489/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +AI D +NL+ A  F +     GIQP+I
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVQTAKEYGYSHLAIMDVDNLYGAYHFLEVTRKYGIQPLI 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +                    S+  L  + +GYQ L++L +   L   G+++   
Sbjct: 63   GLEMTL-------------IKDEENISLRFLALSTKGYQELMKLST---LKMTGRKNWSD 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L+++    +I+            +F    Q+          L  D  ++ +     
Sbjct: 107  FTSHLEDVA---IIV-----------PYFNGVEQL---------DLGHD-YFIGVSPDTP 142

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
              +   ++++       LPL   N      +ED +   +L AV  +  + + D    +  
Sbjct: 143  --QEVFTRLI-------LPLYQVN---SFEKEDIQVLQILSAVKDNVSLREVD--VHSQQ 188

Query: 252  HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                  S++ + F     +AL N   +    S+ +      LPRF  +            
Sbjct: 189  GIFLPASDLEARFKNRFSQALANLQGLIENVSYQIDPSL-KLPRFNPE------------ 235

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R  QG   KG  +  Y +RL+ EL VI  M F  YFL+V D +++ +  
Sbjct: 236  --RPAVEELRERAEQGLSDKGLTSAIYHERLNEELAVIHDMGFDDYFLVVWDLLRFGRSQ 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ AY+L IT IDP+  +L+FERFLN +R +MPD DID     R E 
Sbjct: 294  GYYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDLYRPEF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV+++YG + VAQI+T+ +  AK A+RDV +   +P  ++  + K I           
Sbjct: 354  IRYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKISFRDTLTT--- 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI++K+EG  R  S HAAG+V+ D+ L+  +P+     
Sbjct: 411  AYEKNLQFRQVINSKIEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDLTDYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
             D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + LA+  GV + +  I  +D  T 
Sbjct: 469  EDMLITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQELLAESEGVHLKIEEIDLEDKATL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E  G  + L+ +QP   E+++A  SL RPG  D I  +  RK+GKE
Sbjct: 529  ALFAAGNTKGIFQFEQPGAIRLLKRVQPQVFEEVVATTSLNRPGASDYIDNFVARKHGKE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  + P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK  +EM   K
Sbjct: 589  KVTVLDPALEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAKEMHLMK 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E FI+GA K G ++  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  EDFITGAMKLGHTEEKANQVFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFFQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA Q   ++ P ++N+     K+   +IY  L AIKG+    
Sbjct: 709  VMLNYSSSD------YIVDALQMGFEVAPLAINSIPYHDKIAQKKIYLGLKAIKGMPRDF 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            +  I+E   ++PF S+EDF +R+        +L  LV  G  D F  +R ++L +L N+ 
Sbjct: 763  SYWIIE---NRPFSSVEDFVTRLPKNYKKLSLLTPLVELGLFDEFDKNRQKILVNLPNLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             + +        +   +FA    ++++            + +F  EQ ++G   S HPL 
Sbjct: 820  VFVE--------ELGGLFADTTYSWTEA------DDFTEAEKFYKEQELIGVGISAHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 L K  +           G    L   V   +  +T+KG  + ++   +     + 
Sbjct: 866  ----TLAKQALYPTTPIANLTEGAQATLLVEVQKLKVIRTKKGESMAFLQVHDSKSRMDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TVF 924


>gi|237820831|ref|ZP_04596676.1| DNA polymerase III DnaE [Streptococcus pneumoniae CCRI 1974M2]
          Length = 950

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1023 (29%), Positives = 492/1023 (48%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +      QG+++  +
Sbjct: 63   GLEMTVFVDD-------------QEVNLRFLALSSVGYQQLMKLSTA---KMQGEKTWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++I    +I+                               F     + L    G
Sbjct: 107  LSQYLEDIA---VIV-----------------------------PYFDRVESLEL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++           D E   VL A+  +  + +   P  +  
Sbjct: 131  CDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSRQ 188

Query: 252  HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F    P+AL+N  ++    S+ L +    LPRF               
Sbjct: 189  DVFISASSLEKLFQERFPQALDNLEKLISGISYDLDISL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGIVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  ALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDVSAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  ASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    
Sbjct: 709  IMLNSANSD------YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  ALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ +        +  ++F     ++ +              +F  EQ +LG   S HPL 
Sbjct: 820  EFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|331266518|ref|YP_004326148.1| DNA polymerase III subunit alpha [Streptococcus oralis Uo5]
 gi|326683190|emb|CBZ00808.1| DNA polymerase III subunit alpha [Streptococcus oralis Uo5]
          Length = 1033

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/1023 (29%), Positives = 492/1023 (48%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +AI D +NL+ A  F +     GIQP+I
Sbjct: 3    AQLDTKTVYSFMESVVSIEKYVQTAKVYGYSHLAIMDVDNLYGAYHFLEVTRKYGIQPLI 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +                    S   L  + +GYQ L++L +   L   G+++   
Sbjct: 63   GLEMSL-------------IKDEKNISFRFLALSTKGYQELMKLST---LKMTGRKNWSD 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L+++      ++     G ID+    +                    ++ +     
Sbjct: 107  FTSHLEDVA-----VIVPYFDG-IDQLDLGHDY------------------FIGV----S 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D ++E            P++        ++ED +   +L AV  +  + + D    +  
Sbjct: 139  PDTHQEV--------FTKPILPLYQVNSFAKEDLQVLQILSAVKDNVSMREVDL--HSQQ 188

Query: 252  HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                  S++ + F    P+AL N  ++    S+ L      LPRF      + ++    E
Sbjct: 189  GNFLPASDLEARFKNRFPQALANLQDLIENVSYQLDPSL-KLPRF------NPERPAVEE 241

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR +A  GL          KG  +  YR+RL+ EL VI  M F  YFL+V D +++ +  
Sbjct: 242  LRARAEKGL--------SDKGLTSAIYRERLNEELAVIHDMGFDDYFLVVWDLLRFGRSQ 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ AY+L IT IDP+  +L+FERFLN +R +MPD DID     R E 
Sbjct: 294  GYYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDLYRPEF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV+++YG + VAQI+T+ +  AK A+RDV +   +P  ++  + K I           
Sbjct: 354  IRYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKISFRDTLTT--- 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI++K+EG  R  S HAAG+V+ D+ L+  +P+     
Sbjct: 411  AYEKNLQFRQVINSKIEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDLTDYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
             D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + LA+  GV + +  I  +D ET 
Sbjct: 469  EDMLITQYDAHGVEANGLLKMDFLGLRNLTFVQKMQELLAESEGVHLKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP   E+++A  SL RPG  D I  +  RK+GKE
Sbjct: 529  ALFASGNTKGIFQFEQPGAIRLLKRVQPQVFEEVVATTSLNRPGASDYIDNFVARKHGKE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  + P+++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK  +EM   K
Sbjct: 589  KVTVLDPVLEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAKEMHLMK 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E FI+GA K G  +  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  EDFITGAVKLGHLEEKANQVFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFFQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA Q    + P ++N+     K+   +IY  L AIKG+    
Sbjct: 709  VMLNYSSSD------YIVDALQMGFDVAPLAINSIPYHDKIAKKKIYLGLKAIKGMPRDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            +  I+E   ++PF S+EDF +R+        +L  LV  G  D F  +R ++L +L N+ 
Sbjct: 763  SYWIIE---NRPFSSIEDFVTRLPKNYKKLSLLTPLVELGLFDEFDKNRQKILVNLPNLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             + +        +   +FA    ++++            + +F  EQ ++G   S HPL 
Sbjct: 820  VFVE--------ELGGLFADTNYSWTEA------DDFTEAEKFYKEQELIGVGISPHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 L K  +           G    L   V   +  +T+KG  + ++   +     + 
Sbjct: 866  ----TLAKQALYPTTPITNLTEGAQATLLVEVQKIKVIRTKKGESMAFLQVHDSKSRMDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TVF 924


>gi|316935042|ref|YP_004110024.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris DX-1]
 gi|315602756|gb|ADU45291.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris DX-1]
          Length = 1180

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/1120 (23%), Positives = 446/1120 (39%), Gaps = 141/1120 (12%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----QKA 62
             +P +  + V +++S LEG     + + + +     AI I D N L   +        + 
Sbjct: 2    SAPRYAEIGVTTNFSFLEGGSHPQDYVHEASRLGLDAIGIADRNTLAGVVRAYGELDNED 61

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
             A   + +IG +L                     P ++   +    Y RL  L+S   L 
Sbjct: 62   LAYKPKLLIGARLCFA---------------DGTPDLLAYPTDRAAYGRLCRLLSAGKLR 106

Query: 123  DQGKQSVRICLSWLQEIGTEG----------------------------LIMLT------ 148
              GK    +  + L+    E                             L+ L+      
Sbjct: 107  -AGKGECHLTFADLEAFIDEASASMNQPSASIHQLPTSSWPGSSRPSTPLLRLSQQDVDA 165

Query: 149  ---GGSSG-----------PIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYD 193
                G  G            +    +   ++     L     L    +++ L   +RG D
Sbjct: 166  RHKAGHDGGKVTGRHSKILLVVMPAYRFQTKAIATALERLTALNAGAVWLGLAPYYRGDD 225

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRVTPDH 252
            + R  ++ ++A    +P +ATN+ L+         DVL  V   T + +  R      + 
Sbjct: 226  KRRLDRLRRIAVAARVPCIATNDVLYHHASRRALQDVLTCVREKTTIDKAGRRLEGNAER 285

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +LK  +EM  +F   P+A+  T+  A R  F L       P           K  +  L+
Sbjct: 286  HLKPAAEMARLFRADPDAIAETLRFAGRIGFTLDELKYHYPDEPVPPG----KTAQAHLK 341

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            +    G++    QG   K       +  +D EL +I R  ++ YFL V D +++A+  +I
Sbjct: 342  DLTEQGIKQYFPQGISDK------LKATIDKELAIIERRGYAHYFLTVHDIVRYARSQDI 395

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             +  GRGS A S   Y L IT +DP    LLFERF++ +R   PD D+DF   RR+EV++
Sbjct: 396  -LCQGRGSAANSAVCYVLGITCVDPTEIDLLFERFVSEERDEPPDIDVDFEHSRREEVMQ 454

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            Y+  +YG  R A + T    + ++A+RDVG+AL +       L   +       +     
Sbjct: 455  YIYRRYGRHRAAIVATVIHYRPRSAIRDVGKALGLSEDVTAALADTVWGSWGRGL----- 509

Query: 493  ADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
             ++ + R+A L   +P + R +E++ +L G  RH S H  G V+    L   VP+     
Sbjct: 510  -NEMQVRQAGLDPHNPMIGRAVELATELIGFPRHLSQHVGGYVLTQDRLDSYVPIGNAAM 568

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL-IPFDDHET 608
            +D    +++   I+   ++K D L L  LT ++K  D +AQ   V+  LS     DD++ 
Sbjct: 569  ADRTFIEWDKDDIDAVKMMKVDVLALGMLTCIRKGFDLIAQHKGVRFQLSDIKSEDDNKV 628

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKN 666
            Y +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGPI  D +  Y  R+N
Sbjct: 629  YKMLQRGESIGVFQVESRAQMNMLPRLKPRCFYDLVIEVAIVRPGPIQGDMVHPYLRRRN 688

Query: 667  GKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
            G+E +V   P         +  +L +T GV ++QEQ M+IA   + ++  EA+ LRRAM 
Sbjct: 689  GQEPVVYPSPAGEAGDKDELRQILGKTLGVPLFQEQAMRIAIEAAHFTPDEANQLRRAMA 748

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              +    + K + + +      G   T A N FE +  F  YGF +SHAA++A + Y +A
Sbjct: 749  TFRNVGTIGKFEAKMVGNLMARGYDATFAKNCFEQIKGFGSYGFPESHAASFAKLVYVSA 808

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GD 832
            WMK  +P  F  A +  +        +   DAR   + + P  V+       +       
Sbjct: 809  WMKCEHPDAFCCALLNSQPMGFYAPAQIVGDARSNRVDVRPVDVSFSEGQCTLEERCGEH 868

Query: 833  NRIYYSLAAIKGVGTT--TARHIMEASAD----------------KPFDSLEDFCSRVDS 874
            + +      I G          +  A+ +                 PF SLE F      
Sbjct: 869  HAVRLGFRMIDGFRWADPDEERVRLAAGELPSDDWAARIVAARARGPFSSLEQFGR---I 925

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
              L +R L  L  A A    G  R   L ++  +                 +F       
Sbjct: 926  TGLPKRALILLADADAFRSLGLDRRAALWAVRRLPDDV----------PLPLFEAASARE 975

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GN 993
                      +   +     + + +     GHP++  + +     +    E   T R G 
Sbjct: 976  QQDEHAAPLPLMPMAEHVVADYQTVRLSLKGHPMEFLRALFAAERVVTCREVSDTRRNGR 1035

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +R A +V+ +Q+  +  G  + ++T  +         +P
Sbjct: 1036 RVRCAGVVLVRQRPGSANG--VIFMTIEDETGIANIVVWP 1073


>gi|25027188|ref|NP_737242.1| error-prone DNA polymerase [Corynebacterium efficiens YS-314]
 gi|71151823|sp|Q8FRX6|DNAE2_COREF RecName: Full=Error-prone DNA polymerase
 gi|23492469|dbj|BAC17442.1| putative DNA polymerase III alpha subunit [Corynebacterium efficiens
            YS-314]
          Length = 1073

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1032 (26%), Positives = 436/1032 (42%), Gaps = 99/1032 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L   SSY+ L GA     ++D+       A+A+ D + L+ A+ F++ A   G+  
Sbjct: 76   PFVELHATSSYNFLAGASDPGEMVDRAHELGLSALALVDRDGLYGAVRFAEAAAEVGLAT 135

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +                  G         + +L    EGY+RL  L++   +    K SV
Sbjct: 136  VF-----------------GAELSLREGVLTVLCRGVEGYRRLSHLITGAAMSAGEKGSV 178

Query: 130  RICL-SWLQEIGTEGLIMLTGGS--SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               L   + E G    ++L G             F    V  +        F  R+    
Sbjct: 179  DYPLLPQVAEQGAGHWVVLAGVEWQKKIDHLIECFGRDNVVLE--------FPARMLPED 230

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNN-SLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H    R  +++         +P  AT +       +   A    +A A S++      
Sbjct: 231  TDHHDILRSIQTRTGLRGILSTMPTAATRDHVRLAGAKCALALRANLAEAESSLHPMGG- 289

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                   +L++   +   +    + L  TVEIA  C+F   + AP LPR+   +      
Sbjct: 290  ------TWLRSGGALARAYPQCGDLLATTVEIASGCAFTFDLVAPELPRWDTPDG----H 339

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E   L +   +  + R            +  R ++  EL VI ++ F GYFLIV D +Q
Sbjct: 340  TEMTWLTHLVESRFDRRYRS---RPAEVRERARAQIRHELGVIEQLGFPGYFLIVDDLVQ 396

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +     I +  GRGS A S   + L IT+ +P+   LLFERFL+ DR   PD DID    
Sbjct: 397  FCHNATI-LCQGRGSAANSAVCFVLGITNAEPITAGLLFERFLSRDRDGPPDIDIDIESG 455

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV  +YG +  AQ+    + + K ALRD  RAL  P   VD   +     PA 
Sbjct: 456  RREEVIQYVYTRYGRDNAAQVANVITYRTKGALRDAARALGYPQGTVDAWSRGASEPPAD 515

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                                     ++E++ +L+G  RH   H+ G+VI DRP++ +VP 
Sbjct: 516  -------------------------VVELAGQLKGQPRHLGIHSGGMVICDRPIADVVPT 550

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604
                     V Q++      AGL+KFD LGL  L  L   +D +A  RG+ V+L  +   
Sbjct: 551  EWARMEGRSVVQWDKDDCAAAGLVKFDLLGLGMLEALHHMMDLVAHHRGITVNLWELDLA 610

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYN 662
            D   Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI       Y 
Sbjct: 611  DAGVYDMLCRADAVGVFQVESRAQMSTLPRLKPRTFFDLVVEVALIRPGPIQGGSVHPYL 670

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKI 721
             R++G+E +   HP+++  L +T G+ ++QEQ+MQIA   +G++  EAD LRRAM  K+ 
Sbjct: 671  RRRSGEEAVTYDHPVLEKSLGKTLGIPLFQEQIMQIAVDAAGFTGGEADALRRAMGSKRS 730

Query: 722  KEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               M   + RF  G +  +GI    A  ++  +  FA YGF +SH+ ++A + Y +AW K
Sbjct: 731  PTRMAALRSRFYQGLADTHGIIGDTADKLWNKMVAFAAYGFPESHSQSFATLVYFSAWFK 790

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYP EF A  +  +       +    DAR+  ++I+P S+N   V     D  +   L 
Sbjct: 791  HHYPAEFCAGLLRAQPMGFYSPQSLIADARRHGVEILPISINESGVQADAPDGHLRLGLD 850

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             +KG+G   AR I E     P+ S+ D   R D    +   +E+L  AGALDC G  R +
Sbjct: 851  LVKGLGEEAARRIAE---HAPYTSIPDLSRRADLGVAH---IEALARAGALDCLGVGRRE 904

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             L                 T +   +           I        ++           G
Sbjct: 905  ALWQAGIA----------ATERPGMLPGISA------IEAPALPGMSAFELMATSIAATG 948

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESV-ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
                  P+ + +  L  +G+   +  +     G  +R+A +V  +Q+ +T  G  + ++ 
Sbjct: 949  VTHDAQPMALLRAHLDALGVVPADRLLTDVADGTRVRIAGVVTHRQRPQTASG--VTFLG 1006

Query: 1020 FSEPAKEYEANF 1031
              +         
Sbjct: 1007 LEDETGLMNVMV 1018


>gi|307708635|ref|ZP_07645099.1| DNA polymerase III alpha subunit [Streptococcus mitis NCTC 12261]
 gi|307615384|gb|EFN94593.1| DNA polymerase III alpha subunit [Streptococcus mitis NCTC 12261]
          Length = 1033

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1023 (29%), Positives = 491/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S++  +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIDKYVRAAKEFGYTHLAMMDIDNLYGAFDFLEVTKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++++ + D                ++  L  ++ GYQ+L++L +      QG++S  +
Sbjct: 63   GLEMNVIVDDKD-------------VNLRFLALSSVGYQQLMKLSTA---KMQGEKSWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++     ++++                              F +   +NL    G
Sbjct: 107  LSQYLED-----IVVIVP---------------------------YFEELELLNL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++          +D E   VL A+  +  + +   P  +  
Sbjct: 131  CDYYIGVYPETLASEFHHPILPLYRVNTFESKDREVLQVLTAIKENLPLREV--PLRSKQ 188

Query: 252  HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F    P+AL+N  ++    S+ L      LPRF               
Sbjct: 189  DVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G   KG   ++Y+ RLD EL VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGLAQKGLTGKEYQDRLDQELAVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKH--G 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEDIHLKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  ALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDATAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  ASFIQGSIEAGHTAEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++ P S+NT     K+ +  IY  L +IKG+    
Sbjct: 709  IMLNSANSD------YVTDALEAGFEVAPLSINTIPYHDKIANKSIYLGLKSIKGLSKDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E     P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  AIWIIEHR---PYSNIEDFLAKLPENYLKLPLLEPLVKVGLFDSFEKNRKKVFNNLVNLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ + +         ++F     ++ D              +F  EQ +LG   S HPL 
Sbjct: 820  EFVKVL--------GSLFGETIYSWQDS------EDWTEQEKFYMEQELLGVGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIASKAIYPITPISNLSENSYAIILVEVQKIKVIRTKKGENMAFLQVDDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|259506675|ref|ZP_05749577.1| error-prone DNA polymerase [Corynebacterium efficiens YS-314]
 gi|259165759|gb|EEW50313.1| error-prone DNA polymerase [Corynebacterium efficiens YS-314]
          Length = 1052

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1032 (26%), Positives = 436/1032 (42%), Gaps = 99/1032 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L   SSY+ L GA     ++D+       A+A+ D + L+ A+ F++ A   G+  
Sbjct: 55   PFVELHATSSYNFLAGASDPGEMVDRAHELGLSALALVDRDGLYGAVRFAEAAAEVGLAT 114

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +                  G         + +L    EGY+RL  L++   +    K SV
Sbjct: 115  VF-----------------GAELSLREGVLTVLCRGVEGYRRLSHLITGAAMSAGEKGSV 157

Query: 130  RICL-SWLQEIGTEGLIMLTGGS--SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               L   + E G    ++L G             F    V  +        F  R+    
Sbjct: 158  DYPLLPQVAEQGAGHWVVLAGVEWQKKIDHLIECFGRDNVVLE--------FPARMLPED 209

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNN-SLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H    R  +++         +P  AT +       +   A    +A A S++      
Sbjct: 210  TDHHDILRSIQTRTGLRGILSTMPTAATRDHVRLAGAKCALALRANLAEAESSLHPMGG- 268

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                   +L++   +   +    + L  TVEIA  C+F   + AP LPR+   +      
Sbjct: 269  ------TWLRSGGALARAYPQCGDLLATTVEIASGCAFTFDLVAPELPRWDTPDG----H 318

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E   L +   +  + R            +  R ++  EL VI ++ F GYFLIV D +Q
Sbjct: 319  TEMTWLTHLVESRFDRRYRS---RPAEVRERARAQIRHELGVIEQLGFPGYFLIVDDLVQ 375

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +     I +  GRGS A S   + L IT+ +P+   LLFERFL+ DR   PD DID    
Sbjct: 376  FCHNATI-LCQGRGSAANSAVCFVLGITNAEPITAGLLFERFLSRDRDGPPDIDIDIESG 434

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV  +YG +  AQ+    + + K ALRD  RAL  P   VD   +     PA 
Sbjct: 435  RREEVIQYVYTRYGRDNAAQVANVITYRTKGALRDAARALGYPQGTVDAWSRGASEPPAD 494

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                                     ++E++ +L+G  RH   H+ G+VI DRP++ +VP 
Sbjct: 495  -------------------------VVELAGQLKGQPRHLGIHSGGMVICDRPIADVVPT 529

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604
                     V Q++      AGL+KFD LGL  L  L   +D +A  RG+ V+L  +   
Sbjct: 530  EWARMEGRSVVQWDKDDCAAAGLVKFDLLGLGMLEALHHMMDLVAHHRGITVNLWELDLA 589

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYN 662
            D   Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI       Y 
Sbjct: 590  DAGVYDMLCRADAVGVFQVESRAQMSTLPRLKPRTFFDLVVEVALIRPGPIQGGSVHPYL 649

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKI 721
             R++G+E +   HP+++  L +T G+ ++QEQ+MQIA   +G++  EAD LRRAM  K+ 
Sbjct: 650  RRRSGEEAVTYDHPVLEKSLGKTLGIPLFQEQIMQIAVDAAGFTGGEADALRRAMGSKRS 709

Query: 722  KEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               M   + RF  G +  +GI    A  ++  +  FA YGF +SH+ ++A + Y +AW K
Sbjct: 710  PTRMAALRSRFYQGLADTHGIIGDTADKLWNKMVAFAAYGFPESHSQSFATLVYFSAWFK 769

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYP EF A  +  +       +    DAR+  ++I+P S+N   V     D  +   L 
Sbjct: 770  HHYPAEFCAGLLRAQPMGFYSPQSLIADARRHGVEILPISINESGVQADAPDGHLRLGLD 829

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             +KG+G   AR I E     P+ S+ D   R D    +   +E+L  AGALDC G  R +
Sbjct: 830  LVKGLGEEAARRIAE---HAPYTSIPDLSRRADLGVAH---IEALARAGALDCLGVGRRE 883

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             L                 T +   +           I        ++           G
Sbjct: 884  ALWQAGIA----------ATERPGMLPGISA------IEAPALPGMSAFELMATSIAATG 927

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESV-ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
                  P+ + +  L  +G+   +  +     G  +R+A +V  +Q+ +T  G  + ++ 
Sbjct: 928  VTHDAQPMALLRAHLDALGVVPADRLLTDVADGTRVRIAGVVTHRQRPQTASG--VTFLG 985

Query: 1020 FSEPAKEYEANF 1031
              +         
Sbjct: 986  LEDETGLMNVMV 997


>gi|256832419|ref|YP_003161146.1| DNA polymerase III, alpha subunit [Jonesia denitrificans DSM 20603]
 gi|256685950|gb|ACV08843.1| DNA polymerase III, alpha subunit [Jonesia denitrificans DSM 20603]
          Length = 1093

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/1072 (25%), Positives = 451/1072 (42%), Gaps = 80/1072 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SP +  L  HS+YS L+GA S    + +       A+A+T+ N L+SA++ +  A   G
Sbjct: 2    SSPRYAELHAHSTYSFLDGASSPAEFVAEAERLGLSALALTEHNGLYSAVQVATAAKDTG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ + G ++ +   D  +     +   P    +V+L     GY+ L   +S  +L    K
Sbjct: 62   VRTVFGAEVSVTPADAPEPVAGHR--DPQADHLVVLARDPRGYRALSHALSLAHLAGGAK 119

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                   + L + G +  ++L G    PI RA        A +      + FG +  V  
Sbjct: 120  GRTHHTYTSLADQGDDQWVILAGCRKSPILRALQRQGHDAALEVAHDLAQRFGRQNLVID 179

Query: 187  QRHRG--YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
               RG  YD      V ++A   ++ L+A+ N+ +    D+   +VL A+     ++  D
Sbjct: 180  WVRRGTAYDDALGDAVERVAQEAKIALIASTNAHYAHPRDHRRAEVLSALGAGRTLADND 239

Query: 245  -RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                 +P  +L++  +MV + +  P +++    +A   +F   V AP LP +      D 
Sbjct: 240  PWRLASPTAHLRSARDMVRLHARRPHSVDAAARLADELAFDFDVVAPRLPPYPVPAGHD- 298

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E   LR+                         Q +D EL++I  + F+GYFLIV D 
Sbjct: 299  ---ESTWLRHLTDNKARRVYGTRDTNHAA-----WQHIDHELSIITSLGFAGYFLIVHDI 350

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++   +NI +  GRGS A S   YAL IT +D +R  LLFERFL P+R   PD DID  
Sbjct: 351  MEFCSTHNI-LAQGRGSAANSAVCYALGITAVDAVRHGLLFERFLAPERDGPPDIDIDIE 409

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR+EVI++V  +YG    AQ+ T  + + + A+RD  R L  P  QV+   K I    
Sbjct: 410  SGRREEVIQHVYTRYGRHHAAQVATVITYRPRLAVRDAARVLGYPIGQVNAWSKTIDRSF 469

Query: 484  AHPVSLQAIADDSRFREARLADPSVDR-----------LLEISQKLEGLYRHASTHAAGI 532
                            +                     + + +  L  L RH   H+ G+
Sbjct: 470  RPDTPPGTPTTPDHTSDLPAPTTQPPTPHDGRADLPPAVRDTASLLHNLPRHLGIHSGGM 529

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
            V+ DRP++ + P+         V Q++ +    AGL+KFD LGL  LT L+ + D +A  
Sbjct: 530  VLCDRPVTHVCPVEWGTTPGRTVLQWDKEDCADAGLVKFDLLGLGMLTALRIAFDHVAAT 589

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                + L  +P +D   Y LL    T+G+FQ+ES      L  ++P C  DI+  V+L R
Sbjct: 590  TNTALGLYTLPPEDPGVYELLQAADTVGVFQVESRAQISTLPRLKPTCFYDIVIEVALIR 649

Query: 652  PGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGPI       Y  R+ G+E +   HPL+ P L++T G+ ++QEQ+MQIA   +G++ +E
Sbjct: 650  PGPIQGGSVHPYLRRRQGREPVTYPHPLLKPALEKTLGIPLFQEQLMQIAIDAAGFTPAE 709

Query: 710  ADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            +D LRRAM  K+    M+  + R + G ++ GI    +  I+E L  FAD+GF +SHA +
Sbjct: 710  SDQLRRAMGSKRSTARMEALRTRLLDGMAQRGIPPHASTEIYERLKAFADFGFPESHAFS 769

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP---- 824
            +A I Y +A++K H+P  F +A +  +       +    DAR+  + I  P + T     
Sbjct: 770  FAHIVYASAYLKRHHPAAFYSALLAAQPMGFYSPQSLMNDARRHGLTIHRPCIATSTITA 829

Query: 825  ---------------CVDFKVGDNRIY----------YSLAAIKGVGTTTARHIMEASAD 859
                              F    +  Y            L  I  +  T A+ I+ A   
Sbjct: 830  HPTPNTPQPHPPQHNPHTFHTPASARYVPLPTTHAIQLGLTDIHTITPTIAQRIITARTT 889

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
              F  + D   R +        L +          G +  Q + +     K         
Sbjct: 890  TAFTDINDLAYRAELTTTQLEALAAAGAL---RTLGITPRQGIWAAATASKNTPHTLPGL 946

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            T  H                L   +  +++     +        + +P  + +P L   G
Sbjct: 947  TPHHI-------------PALPPMTAHDTA---HADYWSTRITPNTYPTQLIRPHLTAQG 990

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            I    +         +  A +V  +Q+  T  G  I +++  +         
Sbjct: 991  ILTAHQVNTHEPNRRVTTAGIVTHRQRPPTAHG--ITFLSLEDETGIINVIC 1040


>gi|315613028|ref|ZP_07887939.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis ATCC 49296]
 gi|315315138|gb|EFU63179.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis ATCC 49296]
          Length = 1043

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1023 (29%), Positives = 485/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +AI D +NL+ A  F +      IQP++
Sbjct: 13   TQLDTKTVYSFMESVVSIEKYVQMAKEYGYSHLAIMDVDNLYGAYHFLEATRKHCIQPLV 72

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +                    S+  L  + +GYQ L++L +   L   G+++   
Sbjct: 73   GLEMTL-------------VKDEENLSLRFLALSTKGYQELMKLST---LKMTGRKNWSD 116

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L+++    +I+            +F    Q+          L  D  ++ +     
Sbjct: 117  FTSHLEDVA---IIV-----------PYFNGVEQL---------DLGVD-YFIGVSPDTP 152

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             + +              P++         +ED +   +L AV  +  +   D    +  
Sbjct: 153  QEVFTR------------PILPLYQVNSFEKEDLQVLQILSAVKDNVSLRDVDL--HSQQ 198

Query: 252  HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                  S++ + F    P+AL N   +    S+ +      LPRF  +            
Sbjct: 199  GIFLPASDLEARFKNRFPQALANLQGLIENVSYQIDTSL-KLPRFNPE------------ 245

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R  QG   KG  +  Y +RL+ EL VI  M F  YFL+V D +++ +  
Sbjct: 246  --RPAVEELRERAEQGLSDKGLASAIYHERLNEELAVIHDMGFDDYFLVVWDLLRFGRSQ 303

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ AY+L IT IDP+  +L+FERFLN +R +MPD DID     R E 
Sbjct: 304  GYYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDLYRPEF 363

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV+++YG + VAQI+T+ +  AK A+RDV +   +P  ++  + K I           
Sbjct: 364  IRYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKISFRDTLTT--- 420

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI++K+EG  R  S HAAG+V+ D+ L+  +P+     
Sbjct: 421  AYEKNLQFRQVINSKMEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDLTDYIPL--KYG 478

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
             D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + LA+  GV + +  I  +D ET 
Sbjct: 479  EDMLITQYDAHGVEANGLLKMDFLGLRNLTFVQKMQELLAESEGVHLKIEEIDLEDKETL 538

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E  G  + L+ +QP   E+++A  SL RPG  D I  +  RK+GKE
Sbjct: 539  ALFAAGNTKGIFQFEQPGAIRLLKRVQPQVFEEVVATTSLNRPGASDYIDNFVARKHGKE 598

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  + P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK  +EM   K
Sbjct: 599  KVTVLDPALEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAKEMHLMK 658

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E FI+GA K G ++  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 659  EDFITGAMKLGHTEEKANQVFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFFQ 718

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA Q   ++ P ++N+     K+   +I+  L AIKG+    
Sbjct: 719  VMLNYSSSD------YIVDALQMGFEVAPLAINSIPYHDKIAQKKIHLGLKAIKGMPRDL 772

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            +  I+E   ++PF S+EDF +R+        +L  LV  G  D F  +R ++L +L N+ 
Sbjct: 773  SYWIIE---NRPFSSIEDFVTRLPKNYKKLSLLTPLVELGLFDEFDKNRQKILVNLPNLF 829

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             + +        +   +FA    ++++            + +F  EQ ++G   S HPL 
Sbjct: 830  VFVE--------ELGGLFADTNYSWTEA------DDFTEAEKFYKEQELIGVGISPHPLQ 875

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 L K  +           G    L   V   +  +T+KG  + ++   +     + 
Sbjct: 876  ----TLAKQALYPTTPITNLTEGAQATLLVEVQKIKVIRTKKGESMAFLQVHDSKSRMDV 931

Query: 1030 NFF 1032
              F
Sbjct: 932  TVF 934


>gi|148997019|ref|ZP_01824673.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP11-BS70]
 gi|168575555|ref|ZP_02721491.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae MLV-016]
 gi|169832805|ref|YP_001694350.1| DNA polymerase III DnaE [Streptococcus pneumoniae Hungary19A-6]
 gi|307067549|ref|YP_003876515.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae AP200]
 gi|147756719|gb|EDK63759.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP11-BS70]
 gi|168995307|gb|ACA35919.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            Hungary19A-6]
 gi|183578569|gb|EDT99097.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae MLV-016]
 gi|306409086|gb|ADM84513.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae AP200]
          Length = 1033

 Score =  729 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1023 (29%), Positives = 489/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +      QG+++  +
Sbjct: 63   GLEMTVFVDD-------------QEVNLRFLALSSVGYQQLMKLSTA---KMQGEKTWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++I    +I+                               F     + L    G
Sbjct: 107  LSQYLEDIA---VIV-----------------------------PYFDRVESLEL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++           D E   VL A+  +  + +   P  +  
Sbjct: 131  CDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSRQ 188

Query: 252  HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F    P+AL+N  ++    S+ L      LPRF               
Sbjct: 189  DVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  ALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F++L KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  ASFIQGSIEAGHTAEKAEQVFDVLEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    
Sbjct: 709  IMLNSANSD------YVTDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E     P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  ALWIIEHR---PYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ +        +  ++F     ++ +              +F  EQ +LG   S HPL 
Sbjct: 820  EFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|19551870|ref|NP_599872.1| error-prone DNA polymerase [Corynebacterium glutamicum ATCC 13032]
 gi|62389529|ref|YP_224931.1| error-prone DNA polymerase [Corynebacterium glutamicum ATCC 13032]
 gi|71151824|sp|Q6M7C6|DNAE2_CORGL RecName: Full=Error-prone DNA polymerase
 gi|41324863|emb|CAF19345.1| PUTATIVE DNA POLYMERASE III ALPHA CHAIN [Corynebacterium glutamicum
            ATCC 13032]
          Length = 1055

 Score =  729 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/1034 (26%), Positives = 446/1034 (43%), Gaps = 96/1034 (9%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E S  F  L   SSY+ L GA   ++++ +       A+++ D +  + A+ F++ A  A
Sbjct: 55   EASVPFAELHATSSYNFLTGASDPSDVVVQAKKLGLVALSVMDRDGFYGAVRFAEAAAEA 114

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+  +                  G         + +L    EGY++L  L+S   +    
Sbjct: 115  GMHTVY-----------------GAELSLQEGVLTVLCKNPEGYKKLSHLISDAKMATGE 157

Query: 126  KQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            K  VR   L  + E      ++L G               Q  +K          + + +
Sbjct: 158  KGEVRYPPLPMVAEHAAGDWVVLAG--------------FQWLDKIDYVIDCFKPENIVL 203

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                     D  R   + +     +L  + + N    +           A+A    ++  
Sbjct: 204  EFGSTMTPEDADRNEYLRRTQAKFQLRGILSTNPESAARGSVRLAGAKQALARKMPLADA 263

Query: 244  D-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +         ++++   ++    D  + +  TVE+A  C+F L + AP LP++       
Sbjct: 264  ESELHPMGTTWMRSGDTLLKAHPDYADLIATTVELAAECAFTLDLVAPNLPKWDTP---- 319

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             +  E + L +     ++ R    +      A     ++D+EL VI ++ F GYFL+V D
Sbjct: 320  GEHTEMSWLAHLVSTRIDTRYVGRSADIKARA---ATQIDYELGVIEKLGFPGYFLVVND 376

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++ + +NI +  GRGS A S   + L IT+ +P+   LLFERFL+PDR   PD DID 
Sbjct: 377  LVEFCRDSNI-LCQGRGSAANSAVCFVLGITNAEPISAGLLFERFLSPDRDGPPDIDIDI 435

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI+YV  KYG +  AQ+    + + K A+RD  RAL  P    D   K     
Sbjct: 436  ESGRREEVIQYVYEKYGRDNAAQVANVITYRTKGAMRDAARALGYPQGAADAWAKGTSEP 495

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P                         D +LE++ + +G  RH   H+ G+VI DRP++ +
Sbjct: 496  P-------------------------DDVLELAAQFKGQPRHLGIHSGGMVICDRPIADV 530

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            VP+      +  V Q++      AGL+KFD LGL  L  +   LD +A  RG K++L  +
Sbjct: 531  VPVEWARMDNRSVVQWDKDDCATAGLVKFDLLGLGMLEAIHHMLDLVAEHRGKKINLWEL 590

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--V 659
               + E Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI      
Sbjct: 591  DLAEPEVYDMLCKADAVGVFQVESRAQLSTLPRLKPRTFFDLVVEVALIRPGPIQGGSVH 650

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-G 718
             Y  R+ G+E I   HP+++  L +T G+ ++QEQ+MQ+A   +G+S  EAD LRRAM  
Sbjct: 651  PYLRRRAGEEAITYDHPVLEKSLGKTLGIPLFQEQLMQVAVDAAGFSGGEADSLRRAMGS 710

Query: 719  KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            K+  E M   + RF  G    NGI    A  ++  +  FA YGF +SH+ ++A + Y +A
Sbjct: 711  KRSPERMAALRSRFFQGLKDTNGIVGETAEKLWNKIVAFAAYGFPESHSQSFASLVYFSA 770

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W K HYP EF    +  +       +    DAR+  + I+P +VN   V+    +  I  
Sbjct: 771  WFKYHYPAEFCVGLLRAQPMGFYSPQSLISDARRHGVSILPITVNDSGVEADAPNGAIRL 830

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  +KG+G   A+ I +   + PFDS+ D   R D    N   +E+L  AGA+DC G  
Sbjct: 831  GLNLVKGLGHDAAQRIED---NAPFDSIPDLSRRADL---NVAQVEALARAGAVDCLGVG 884

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R Q L                 T K   +      +  +   L   S             
Sbjct: 885  RRQALW----------QAGVAATEKPGMLPGL---SVIEAPALPGMSAF---ELMATNIS 928

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G      P+ + +  + ++GI   +  +    G  +R+A +V  +Q+ +T  G    +
Sbjct: 929  ATGVTADYQPMALIRERMEELGIVPADRLLEVEDGTRLRIAGIVTHRQRPQTASGLT--F 986

Query: 1018 VTFSEPAKEYEANF 1031
            +   +         
Sbjct: 987  LGMEDETGLMNVMV 1000


>gi|15805534|ref|NP_294230.1| DNA polymerase III subunit alpha [Deinococcus radiodurans R1]
 gi|14194695|sp|Q9RX08|DPO3A_DEIRA RecName: Full=DNA polymerase III subunit alpha
 gi|6458195|gb|AAF10085.1|AE001909_7 DNA polymerase III, alpha subunit [Deinococcus radiodurans R1]
          Length = 1335

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/733 (41%), Positives = 440/733 (60%), Gaps = 26/733 (3%)

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
             +   +   +A    +R ++EL+VI  M F  YFLIVAD+I WAK ++I VGPGRGSGAG
Sbjct: 457  EETTRSHHRYALKLLRRAEYELSVINNMGFPDYFLIVADYINWAKDHDISVGPGRGSGAG 516

Query: 384  SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            S+ AYA+ IT++DPL F LLFERFLNPDR+SMPDFDIDF   RR EVI YVQ KYG ++V
Sbjct: 517  SLVAYAIRITNLDPLEFELLFERFLNPDRISMPDFDIDFNDARRTEVIGYVQEKYGTDKV 576

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREAR 502
            AQI TFG++ +KA L+DV R + + Y++VD++ KLIP       SL QA       ++  
Sbjct: 577  AQIATFGTMASKACLKDVARVMGLEYAKVDKVSKLIPIKFGKSYSLEQAREAVPDIQQML 636

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
              D  +    E +QKLEGL RHAS HAAG+VIG   L+ LVP+ RD   +  V Q++MK 
Sbjct: 637  AEDAQLLEAYEFAQKLEGLTRHASVHAAGVVIGREELTNLVPVMRDTSGEGQVCQYDMKS 696

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----RGVKVDLSLIPFDDHETYHLLTTKGT 617
            +E  GLIK DFLGL+TL+ L ++   L +          D   IPFDD +TY L++   T
Sbjct: 697  VEDIGLIKMDFLGLRTLSFLDEAKRILRESGTDFEEKYGDFDHIPFDDEKTYELMSRGDT 756

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH-- 675
             G+FQLE +G+  A   ++P  + DIIAL +LYRPGP++NI  Y  R +G E++      
Sbjct: 757  KGVFQLEGAGIADASRRLKPRRLADIIALSALYRPGPMENIPTYVRRHHGIEEVDYDKDG 816

Query: 676  -----PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
                   ++ +L+ET G+ +YQEQ+MQIA  ++GYSL  AD+LRRAMGKK  EEM +Q++
Sbjct: 817  FPNSKQWLEKILQETYGIPVYQEQIMQIASEVAGYSLGGADLLRRAMGKKDAEEMKRQRQ 876

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ GA + G+ +     +F++L  FA+YGFNKSH+AAY VI+YQTAW+K +YPV+F+AA
Sbjct: 877  LFVVGAKEKGVPEDEGNKLFDMLDAFANYGFNKSHSAAYGVITYQTAWLKANYPVQFMAA 936

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +T+E  + +K+ ++  DAR+ ++ ++PP +N    DF V    I + L AIKG+G +  
Sbjct: 937  LLTVERRDSDKVAEYVSDARKMDLHVLPPDINRSSSDFAVAGEEILFGLYAIKGLGESAV 996

Query: 851  RHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              I+E       F SL DFCSR+ +K  NR+ LESL+ +GA D FG  R QL++SL++  
Sbjct: 997  LRILEEREKAGAFKSLADFCSRLGNKVCNRKALESLIKSGAFDAFGE-RHQLIESLEDAL 1055

Query: 910  KYAQWVEK--NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + A    +   R     ++    +    ++      +  +   R   E+  LG Y SGHP
Sbjct: 1056 EDAAGTAEINARAQSGMSMMFGMEEVKKERPLRSSIAPYSDLERLAIEKEALGLYISGHP 1115

Query: 968  LDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            L+ ++  LR+       +         VA  +     LA M+    +K T+ G  +    
Sbjct: 1116 LEQHEG-LREAASCRVSDLDAWFALQNVAPGKRQKAVLAGMIEGVVKKPTKSGGMMARFI 1174

Query: 1020 FSEPAKEYEANFF 1032
             ++ + + E   F
Sbjct: 1175 LADESGQMELVAF 1187



 Score =  268 bits (685), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 90/350 (25%), Positives = 150/350 (42%), Gaps = 15/350 (4%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAA---DQQ-PAIAITDTNNLFSALEFSQKA 62
           +   F HL  H+ YSLL+GA  L ++L        + Q PA+A+TD  N+  A+ F   A
Sbjct: 20  QPKKFAHLHQHTQYSLLDGAAKLKDLLKWAKEVTPEGQTPALAMTDHGNMHGAVHFYNYA 79

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
               ++PIIG +  +      +    + +     +  + LL    EGYQ L  L SR Y 
Sbjct: 80  MGMEVKPIIGYEAYVVPGFGTRRDRSRAQDGEKGIFHLTLLARDFEGYQNLCRLSSRGYT 139

Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                   RI    LQE   +G+I  +G     + +         A  RLL +++LFGD 
Sbjct: 140 EG-YYYKPRIDHELLQE-HHKGIIAFSGCLGSEVQQLLMQGREDDARARLLWYRELFGDN 197

Query: 182 LYVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            ++ +Q H   ++ + + +++  A    + +VATN+  ++ + D  AH+ L+A+     +
Sbjct: 198 YFIEIQDHGLPEQKKNNPILKAWAQELGIGMVATNDGHYVKKSDATAHETLLAIQTKATL 257

Query: 241 SQKDRPRVTPDHYL-KNRSEMVSIFS---DLPEALENTVEIARRCSFILQVHAPILPRFI 296
           + ++R +   D +  KN  EM           E  +NT  IA  C+  L V      +  
Sbjct: 258 ADENRFKFPCDEFYVKNLEEMQRALPVSEWGEEPFDNTAHIAELCNVELPVGKKRQYQMP 317

Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
           +    +  +    ELR +  AG   R            +DY  R   EL 
Sbjct: 318 QLPIPE-GRSMAEELRVQTYAGAVKRYPAHLTE--GLLRDYAARSLAELG 364


>gi|237649493|ref|ZP_04523745.1| DNA polymerase III DnaE [Streptococcus pneumoniae CCRI 1974]
          Length = 1033

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1023 (29%), Positives = 492/1023 (48%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +      QG+++  +
Sbjct: 63   GLEMTVFVDD-------------QEVNLRFLALSSVGYQQLMKLSTA---KMQGEKTWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++I    +I+                               F     + L    G
Sbjct: 107  LSQYLEDIA---VIV-----------------------------PYFDRVESLEL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++           D E   VL A+  +  + +   P  +  
Sbjct: 131  CDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSRQ 188

Query: 252  HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F    P+AL+N  ++    S+ L +    LPRF               
Sbjct: 189  DVFISASSLEKLFQERFPQALDNLEKLISGISYDLDISL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGIVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  ALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDVSAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  ASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    
Sbjct: 709  IMLNSANSD------YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  ALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ +        +  ++F     ++ +              +F  EQ +LG   S HPL 
Sbjct: 820  EFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|332076180|gb|EGI86646.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae GA41301]
          Length = 1033

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1023 (29%), Positives = 492/1023 (48%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +      QG+++  +
Sbjct: 63   GLEMTVFVDD-------------QEVNLRFLALSSVGYQQLMKLSTA---KMQGEKTWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++I    +I+                               F     + L    G
Sbjct: 107  LSQYLEDIA---VIV-----------------------------PYFDRVESLEL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++           D E   VL A+  +  + +   P  +  
Sbjct: 131  CDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSRQ 188

Query: 252  HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F    P+AL+N  ++    S+ L +    LPRF               
Sbjct: 189  DVFISASSLEKLFQERFPQALDNLEKLISGISYDLDISL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  ALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDVSAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  ASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    
Sbjct: 709  IMLNSANSD------YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  ALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ +        +  ++F     ++ +              +F  EQ +LG   S HPL 
Sbjct: 820  EFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|282897054|ref|ZP_06305056.1| DNA polymerase III, alpha subunit [Raphidiopsis brookii D9]
 gi|281197706|gb|EFA72600.1| DNA polymerase III, alpha subunit [Raphidiopsis brookii D9]
          Length = 882

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/812 (35%), Positives = 452/812 (55%), Gaps = 63/812 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-GIQ 68
           SFV L +HS YSLL+GA  +  ++++  A    ++A+TD   ++ A+E  +   +  G +
Sbjct: 2   SFVPLHLHSDYSLLDGASQIPELVEQAIALGMNSLALTDHGVMYGAIELIKICRSKPGFK 61

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ 127
           PIIG ++ I   D  K   + +         V+L    +GY+ L++L +  +L   QGK 
Sbjct: 62  PIIGNEMYIINGDIEKQERRPR------YHQVVLAKNTKGYKNLVKLTTISHLKGTQGKG 115

Query: 128 ---SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 I  + L+E   EGLI+ +   +G I +A      + A K    +K +FG+  Y+
Sbjct: 116 IFSRPCINKNLLEE-HKEGLIVTSACLAGEIPQAVLGGKLETARKVARWYKGVFGEDFYL 174

Query: 185 NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +Q H    DR    ++V++A    +  +ATN+S ++S  D EAHD L+ +    +++  
Sbjct: 175 EIQDHGSQEDRIVNVELVKIARELGIKFIATNDSHYISCFDVEAHDALLCIQTGKLIADD 234

Query: 244 DRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIE 297
            R R +   YLK+  EM  +F D      + EA+  T E+A +      +  P +P    
Sbjct: 235 KRMRYSGTEYLKSTQEMQLLFRDHLTDDVIAEAIATTTEVAEKVEVYNIMDEPKIPTPPI 294

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                     +      A  GL  RL +   ++      Y++RL++EL +I +M FS YF
Sbjct: 295 PTG----HTPDTYTEEVAWQGLLKRLNR--KSRNEVDTLYKERLEYELKMIEQMGFSSYF 348

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           L+V D+I++A+ +NIPVGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R SMPD
Sbjct: 349 LVVWDYIKFARDHNIPVGPGRGSAAGSLVAYAMGITNIDPVHHGLLFERFLNPERKSMPD 408

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D DFC ++RD+VI YV  KYG ++VAQIITF  L +KA L+DV R L +PY + D++ K
Sbjct: 409 IDTDFCIEKRDQVISYVTEKYGADKVAQIITFNRLTSKAVLKDVARVLDIPYGEADKMAK 468

Query: 478 LIPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
           +IP     P  L+ +      +  F+     +  V R ++++ ++EG  +    HAAG+V
Sbjct: 469 MIPVVRGKPTKLKVMISDETPEPEFKAKYDKEQHVRRWIDMAMRIEGTNKTFGVHAAGVV 528

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
           I   PL ++VP+ ++      +TQ+ M+ +E  GL+K DF G +      K++D + Q  
Sbjct: 529 ISSEPLDEIVPLQKN-NDGSVITQYFMEDLESLGLLKMDFFGSEKSDPNSKTIDLIEQNR 587

Query: 594 VKV--------------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
                                  + S +P D  + Y LL +    G+FQLESSGM+Q + 
Sbjct: 588 GYTIDPDDITRQERKAQKILAKGEYSTLPKDVAQAYSLLESGDLEGVFQLESSGMKQIVR 647

Query: 634 GMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            ++P  IEDI ++++LYRPGP+D   I  + NRK+G+E I     ++ P+L ET G+++Y
Sbjct: 648 DLKPSNIEDISSILALYRPGPLDAGLIPKFINRKHGRESIDYESQILQPILNETYGIMVY 707

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QEQ+M+IAQ ++GYSL +AD+LRRAMGKK   EM KQ+E+FI GA+KNG+ K +A  +F 
Sbjct: 708 QEQIMKIAQDMAGYSLGQADLLRRAMGKKKVAEMQKQQEKFIDGATKNGVKKQVAEQLFA 767

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            + KFA+Y            +SY+T  +   Y
Sbjct: 768 DMLKFAEYC-----------LSYETEVLTLEY 788


>gi|149919649|ref|ZP_01908128.1| DNA polymerase III, alpha subunit [Plesiocystis pacifica SIR-1]
 gi|149819592|gb|EDM79020.1| DNA polymerase III, alpha subunit [Plesiocystis pacifica SIR-1]
          Length = 1125

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/1091 (25%), Positives = 477/1091 (43%), Gaps = 102/1091 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +V L V S++S LEGA   + +++  A    PA+ + D + +   +     A    ++ 
Sbjct: 3    PYVPLTVKSNFSFLEGASHPSELVETAAELGLPALGLCDRDGVHGVVRAHMAAKEVNLKL 62

Query: 70   IIGC-----------------------QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA 106
            ++G                                      +          + +L    
Sbjct: 63   LLGAELSLGSLPEQLMLTSPTPRRAQQNRRSSRGRGRGRGRKPPPELGEGSRVTVLAEDR 122

Query: 107  EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
            +G+ RL  L+S  +     K   R+ L  L      G+    G ++    R+        
Sbjct: 123  DGWARLCRLLSIAHGRGP-KGQARLTLDELAGEAGTGVY---GEAANSPARSMHARPGAG 178

Query: 167  AEKRLLTFKKL-------FGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSL 218
                +   + L         DR+Y  + RHR  +    E ++   A    +  V + + L
Sbjct: 179  LIALVRDPQHLPLLAEAWGRDRVYALVTRHRRAEELALEDKLRAAAQHVGVACVGSTDVL 238

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            +         DVL  V     + +  +      +H L +   M   F+D PE L+ ++EI
Sbjct: 239  YHRSARRPLQDVLACVRAGATLREAGQAIQGNAEHALDSIVAMRERFADCPELLDRSLEI 298

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
            A RCSF L     + P     E     + E + LR    AG   R A           + 
Sbjct: 299  AERCSFSLDQLRYVYP----GETLPAGRSEGDHLRELTFAGARTRYADRI------PPEV 348

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
              +L+ EL++IA + + GYFL + + +++ ++  I +  GRGS A S   Y L IT IDP
Sbjct: 349  TAQLERELSLIAELDYGGYFLTMKEIVEFCRREGI-LCQGRGSAANSAVCYCLGITAIDP 407

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
            +R  LLFERFL+ +R   PD D+D   +RR+EVI++V  ++G    A +      +A++A
Sbjct: 408  VRMDLLFERFLSRERAEPPDIDLDIEHERREEVIQWVYARWGRRHAAMVANVIRYRARSA 467

Query: 458  LRDVGRALQMPYSQVDRLCKLIPN----DPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
            +R+VG+ L +P + +DR+ KL+ +        P  L+ +  D          P  + L+ 
Sbjct: 468  VREVGKVLGLPQTCLDRVSKLLGHHYHGGSVDPELLRTVGLDPE-------HPIHEHLIR 520

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
            +S +L    RH S H  G ++G  P+  +VP+         V Q++   +E  GL K D 
Sbjct: 521  LSTELLDFPRHLSIHPGGFLLGSDPVDSMVPIEPASMEGRTVIQWDKYDVEDLGLFKVDL 580

Query: 574  LGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL  L+ +++ LD + A  GV +D++ IP++D  T+ LL    T+G+FQ+ES      L
Sbjct: 581  LGLGALSHVRRCLDLIGAHEGVDLDMATIPYEDTPTFDLLCRGDTVGVFQVESRAQMAML 640

Query: 633  EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
              ++P C  D++  V++ RPGPI  D +  Y  R+ G E I   HP ++ +L +T GV I
Sbjct: 641  PRLRPRCFYDLVIEVAIVRPGPIQGDMVHPYLRRRQGHEPIEFPHPKLERVLAKTCGVPI 700

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +QEQVM++A  ++ Y+  EAD LRR MG  +    ++  ++R +S    NGI +  A  +
Sbjct: 701  FQEQVMKLAIAVADYTPGEADQLRRDMGAWRSSGRIEAHEQRLVSRMMANGIEREFAERV 760

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            F+ +  F +YGF +SHAA++A+I++ TAW++ H+   F  A +  +      +    +DA
Sbjct: 761  FQQIKGFGEYGFPESHAASFALIAWVTAWLRAHHMPAFSCALLNSQPMGFYSVATLVEDA 820

Query: 810  RQFNIQIMPPSVNTPCVDF--------------KVGDNRIYYSLAAIKGVGTTTARHIME 855
            R+  +++ P  V +   D                     +   L  IKG+    A  ++ 
Sbjct: 821  RRHGVEVRPIDVRSSDWDCLLEPRKLEGAGGPDPCSRWAMRMGLRWIKGLAHKDAAAVVA 880

Query: 856  ASA-----------DKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM-QLL 902
            A              +P +  L+DF   V   +L ++ L  L  AGAL+ F   R  + L
Sbjct: 881  ARRARLAKNSGKNPGRPAWRDLDDF---VRDTRLPKKSLTLLAEAGALEAF--DRAPRPL 935

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF- 961
                + ++ A W  +    + ++  +  +           F   +       + R   F 
Sbjct: 936  ADRTSTRRDASWAVRGALVRADDRLSLGEAAAHQ----PAFPRLDRHEAVAWDYRT-SFH 990

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
               GHPL+  +  LR+  +   E+  A   G  +R   +V+ +Q+  T  G  + + T  
Sbjct: 991  STRGHPLEQLRARLRRARVPHAEQLAALPTGRKVRYVGLVICRQRPGTASG--VTFCTLE 1048

Query: 1022 EPAKEYEANFF 1032
            +         +
Sbjct: 1049 DETGFVNLVIW 1059


>gi|261253395|ref|ZP_05945968.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891]
 gi|260936786|gb|EEX92775.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891]
          Length = 1023

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/1039 (25%), Positives = 443/1039 (42%), Gaps = 88/1039 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA--GI 67
            ++  L   S++S L GA     ++ +    +  ++AITD  ++   +            I
Sbjct: 2    AYAELFCQSNFSFLTGASHAQELILQADFLRYHSLAITDECSVAGVVRAYSAIKNQQLNI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + IIG    ++ +                  +VL+  + E Y  L  +++      +   
Sbjct: 62   KLIIGSMFWLNEE----------------CQVVLICPSREAYAELCRIITNARRRSE--- 102

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              +  LS    +      +L           +        +K      +    RL++ +Q
Sbjct: 103  KGQYQLSEWDLMSIRHCFVL-----------WLPCHKPSDKKWGHWLAQQHQHRLWLAVQ 151

Query: 188  RHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH    D+       QLA    LP+ A    L  +         L A+ H   V++    
Sbjct: 152  RHLSCDDKQYLEYCQQLAEQLHLPITACGGVLMHTATRLPLQHTLTAIKHGCSVNELGEQ 211

Query: 247  RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             +T  +  L+++ ++  +F   PE L  +V IA RCSF L+      P  +  +      
Sbjct: 212  LLTNTERSLRSQEKLSKLFK--PEWLAESVAIAERCSFSLKELQYEYPSELVPDG----Y 265

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     G + R  +G         D +Q ++ EL +I  + +  YFL + D + 
Sbjct: 266  SPMSYLRQLVETGKKRRFPEGV------PSDIQQTINKELCLIEELNYPFYFLTIHDIVM 319

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK+++I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +
Sbjct: 320  FAKRHHILY-QGRGSAANSVVCYCLEITAVDPRQISVLFERFISKERDEPPDIDVDFEHE 378

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  SQ+D   K + N    
Sbjct: 379  RREEVIQYIYQKYGRERAALAATVISYRFKSAVRDVGKALGIEESQLDYFIKNV-NRRDR 437

Query: 486  PVSLQAIADDSRFREARLADPSVD--RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                QA     +  E  L   S+   + + +   + G  RH S H  G +I   PL +LV
Sbjct: 438  AQGWQA-----QIVELGLQPDSLKGEQFITLINDILGFPRHLSQHVGGFIIAAGPLYELV 492

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDLSL 600
            P+     +D  V Q++   +E   L+K D L L  L+ ++K  + + +   +   +    
Sbjct: 493  PVENASMADRTVIQWDKDDLESLKLLKVDVLALGMLSAIRKCFNLVEKYHQQSLSIAEIT 552

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
               DD   Y ++    T+G+FQ+ES      L  ++P    D++  +++ RPGPI  D +
Sbjct: 553  RRQDDANVYQMIQRADTVGVFQIESRAQMSMLPRLKPATYYDLVIQIAIVRPGPIQGDMV 612

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  R+NG+E+I      +  +L+ T GV I+QEQV++IA + +G+S  EAD LRRAM 
Sbjct: 613  HPFLKRRNGEEQINYPSEEVRSVLQRTLGVPIFQEQVIKIAMVAAGFSGGEADQLRRAMA 672

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K   ++ K K + I G    G     A  IFE +  F +YGF +SH+A++AV++Y +A
Sbjct: 673  AWKKSGDLVKFKTKLIEGMLSRGYELEFAKRIFEQILGFGEYGFPESHSASFAVLAYCSA 732

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDN 833
            W+K +YP  F  + +           +  QDA +  + I+P  VN    D ++    G  
Sbjct: 733  WLKHYYPEAFYTSLLNSLPMGFYSASQLVQDAHRHKVVILPICVNVSLYDHQMVSHQGGW 792

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I      IKG    +A+ ++ A A   F        ++    LNRR ++ L  A A+  
Sbjct: 793  AIRLGFRQIKGFSPQSAKQLIHARAKSGFT----HAGQIKHIGLNRRDVDLLASANAMHT 848

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R Q   ++ +                  +F   +       T         S    
Sbjct: 849  LSQNRYQTRWAMMDSLSD------------LPLFQDTQDD-----TAPLIGTPTESQTLL 891

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +    G   + HP+ +             +E       + + +  +V  KQ   T  G 
Sbjct: 892  EDYAATGLSLAKHPITLLDDAGVLGRFTRMQELKNKQHQSLVTVTGVVTGKQSPGTAAG- 950

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + + T  +         +
Sbjct: 951  -VTFFTLEDDTGNINVVVW 968


>gi|168482961|ref|ZP_02707913.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            CDC1873-00]
 gi|172043523|gb|EDT51569.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            CDC1873-00]
          Length = 1033

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/1024 (29%), Positives = 495/1024 (48%), Gaps = 105/1024 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +      QG+++  +
Sbjct: 63   GLEMTVFVDD-------------QEVNLRFLALSSVGYQQLMKLSTA---KMQGEKTWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-VNLQRHR 190
               +L++I    +I+                               + DR+  + L    
Sbjct: 107  LSQYLEDIA---VIV------------------------------SYFDRVESLEL---- 129

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D Y       LA     P++           D E   VL A+  +  + +   P  + 
Sbjct: 130  GCDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSR 187

Query: 251  DHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                 + S +  +F    P+AL+N  ++    S+ L      LPRF              
Sbjct: 188  QDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSL-KLPRFNP------------ 234

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
                 AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + 
Sbjct: 235  --ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRS 292

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R +
Sbjct: 293  NGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPD 352

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I          
Sbjct: 353  FIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK--- 409

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+    
Sbjct: 410  SAYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KY 467

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
              ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET
Sbjct: 468  GDEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLEDKET 527

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+
Sbjct: 528  LALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQ 587

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + 
Sbjct: 588  EEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEM 647

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F 
Sbjct: 648  RASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFY 707

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA +   ++   S+NT     K+ +  IY  L +IKGV   
Sbjct: 708  QVMLNSSNSD------YLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIKGVSND 761

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+
Sbjct: 762  LALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANL 818

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             ++ +        +  ++F     ++      +K        +F  EQ +LG   S HPL
Sbjct: 819  FEFVK--------ELGSLFGDAIYSW------QKSEDWTEQEKFYMEQELLGIGVSKHPL 864

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                  +    I            +   +   V   +  +T+KG  + ++   +  K+ +
Sbjct: 865  Q----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQVDDSKKKLD 920

Query: 1029 ANFF 1032
               F
Sbjct: 921  VTLF 924


>gi|301794047|emb|CBW36446.1| DNA polymerase III alpha subunit [Streptococcus pneumoniae INV104]
          Length = 1033

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1023 (29%), Positives = 491/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +      QG+++  +
Sbjct: 63   GLEMTVFVDD-------------QGVNLRFLALSSVGYQQLMKLSTA---KMQGEKTWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++I    +I+                               F     + L    G
Sbjct: 107  LSQYLEDIA---VIV-----------------------------PYFDRVESLEL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++           D E   VL A+  +  + +   P  +  
Sbjct: 131  CDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSRQ 188

Query: 252  HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F    P+AL+N  ++    S+ L      LPRF               
Sbjct: 189  DVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  ALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  + P+++ +L  T G+++YQEQVMQ+AQ L+G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRLAGFSLGKADILRRAMGKKDASAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  ASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++   S+NT     K+ +  IY  L +IKGV    
Sbjct: 709  VMLNSSNSD------YLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIKGVSNDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  ALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ +        +  ++F     ++ +              +F  EQ +LG   S HPL 
Sbjct: 820  EFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|21323403|dbj|BAB98031.1| DNA polymerase III alpha subunit [Corynebacterium glutamicum ATCC
            13032]
          Length = 1004

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/1034 (26%), Positives = 446/1034 (43%), Gaps = 96/1034 (9%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E S  F  L   SSY+ L GA   ++++ +       A+++ D +  + A+ F++ A  A
Sbjct: 4    EASVPFAELHATSSYNFLTGASDPSDVVVQAKKLGLVALSVMDRDGFYGAVRFAEAAAEA 63

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+  +                  G         + +L    EGY++L  L+S   +    
Sbjct: 64   GMHTVY-----------------GAELSLQEGVLTVLCKNPEGYKKLSHLISDAKMATGE 106

Query: 126  KQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            K  VR   L  + E      ++L G               Q  +K          + + +
Sbjct: 107  KGEVRYPPLPMVAEHAAGDWVVLAG--------------FQWLDKIDYVIDCFKPENIVL 152

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                     D  R   + +     +L  + + N    +           A+A    ++  
Sbjct: 153  EFGSTMTPEDADRNEYLRRTQAKFQLRGILSTNPESAARGSVRLAGAKQALARKMPLADA 212

Query: 244  D-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +         ++++   ++    D  + +  TVE+A  C+F L + AP LP++       
Sbjct: 213  ESELHPMGTTWMRSGDTLLKAHPDYADLIATTVELAAECAFTLDLVAPNLPKWDTP---- 268

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             +  E + L +     ++ R    +      A     ++D+EL VI ++ F GYFL+V D
Sbjct: 269  GEHTEMSWLAHLVSTRIDTRYVGRSADIKARA---ATQIDYELGVIEKLGFPGYFLVVND 325

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++ + +NI +  GRGS A S   + L IT+ +P+   LLFERFL+PDR   PD DID 
Sbjct: 326  LVEFCRDSNI-LCQGRGSAANSAVCFVLGITNAEPISAGLLFERFLSPDRDGPPDIDIDI 384

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI+YV  KYG +  AQ+    + + K A+RD  RAL  P    D   K     
Sbjct: 385  ESGRREEVIQYVYEKYGRDNAAQVANVITYRTKGAMRDAARALGYPQGAADAWAKGTSEP 444

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P                         D +LE++ + +G  RH   H+ G+VI DRP++ +
Sbjct: 445  P-------------------------DDVLELAAQFKGQPRHLGIHSGGMVICDRPIADV 479

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            VP+      +  V Q++      AGL+KFD LGL  L  +   LD +A  RG K++L  +
Sbjct: 480  VPVEWARMDNRSVVQWDKDDCATAGLVKFDLLGLGMLEAIHHMLDLVAEHRGKKINLWEL 539

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--V 659
               + E Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI      
Sbjct: 540  DLAEPEVYDMLCKADAVGVFQVESRAQLSTLPRLKPRTFFDLVVEVALIRPGPIQGGSVH 599

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-G 718
             Y  R+ G+E I   HP+++  L +T G+ ++QEQ+MQ+A   +G+S  EAD LRRAM  
Sbjct: 600  PYLRRRAGEEAITYDHPVLEKSLGKTLGIPLFQEQLMQVAVDAAGFSGGEADSLRRAMGS 659

Query: 719  KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            K+  E M   + RF  G    NGI    A  ++  +  FA YGF +SH+ ++A + Y +A
Sbjct: 660  KRSPERMAALRSRFFQGLKDTNGIVGETAEKLWNKIVAFAAYGFPESHSQSFASLVYFSA 719

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W K HYP EF    +  +       +    DAR+  + I+P +VN   V+    +  I  
Sbjct: 720  WFKYHYPAEFCVGLLRAQPMGFYSPQSLISDARRHGVSILPITVNDSGVEADAPNGAIRL 779

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  +KG+G   A+ I +   + PFDS+ D   R D    N   +E+L  AGA+DC G  
Sbjct: 780  GLNLVKGLGHDAAQRIED---NAPFDSIPDLSRRADL---NVAQVEALARAGAVDCLGVG 833

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R Q L                 T K   +      +  +   L   S             
Sbjct: 834  RRQALW----------QAGVAATEKPGMLPGL---SVIEAPALPGMSAF---ELMATNIS 877

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G      P+ + +  + ++GI   +  +    G  +R+A +V  +Q+ +T  G    +
Sbjct: 878  ATGVTADYQPMALIRERMEELGIVPADRLLEVEDGTRLRIAGIVTHRQRPQTASGLT--F 935

Query: 1018 VTFSEPAKEYEANF 1031
            +   +         
Sbjct: 936  LGMEDETGLMNVMV 949


>gi|167648416|ref|YP_001686079.1| DNA polymerase III subunit alpha [Caulobacter sp. K31]
 gi|167350846|gb|ABZ73581.1| DNA polymerase III, alpha subunit [Caulobacter sp. K31]
          Length = 1117

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/1090 (23%), Positives = 438/1090 (40%), Gaps = 111/1090 (10%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K+ ++  LQ  +++S L GA     ++    A    A+ + D N+L   +     A    
Sbjct: 2    KTHAYAELQATTNFSFLRGASHAQELMLTGQALGLTAVGVADRNSLAGVVRAWTAAKDLK 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+ + GC+LD                    PS++   S  E + RL  L++       GK
Sbjct: 62   IRALTGCRLDF---------------MDGAPSLLCYPSDREAFGRLTRLLTVGQRR-AGK 105

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +      E     L ++   +             +  E  L         R+++  
Sbjct: 106  GECHLSWKDFLEHAEGQLALIVPPARLD----------EAFEADLARIAGELRGRVWLAA 155

Query: 187  QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD- 244
             R +   D  R S++  LA     P+VATN+ L+   E     DV+  +     ++Q   
Sbjct: 156  SRAYAAQDLKRLSRLADLAREARAPMVATNDVLYHGPERRPLQDVMTCIREGCTITQAGF 215

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R     + ++K  +EM  +F   P+A+E T+EI  R  F L       P           
Sbjct: 216  RLEANAERHIKTPAEMARLFERWPQAVERTIEIVERIGFDLGDLKEQYPDEPVPPG---- 271

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K     L +    G   R   G   K         +L  EL +IA+M +  YF+ V D +
Sbjct: 272  KTAMQHLTDLTWQGAAWRYPNGVSPK------VADQLREELRLIAKMDYPNYFITVHDIV 325

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
              A++  I +  GRGS A S   + L +T IDP    LLF RF++ +R   PD D+DF  
Sbjct: 326  HKAREMGI-LCQGRGSAANSSVCFCLGVTAIDPTEHRLLFTRFISENRGEPPDIDVDFEH 384

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EV++YV  +YG E  A   T    + ++A+RDVG+AL +       L   +     
Sbjct: 385  ERREEVMQYVYKRYGREYAAICCTVIHYRPRSAIRDVGKALGLTEDITAILANTVWGSWG 444

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  + I            +P + R + ++ +L    RH S H  G V+  R L + VP
Sbjct: 445  DGLPDEHIKQTG----LDPNNPQIARAIALATELLQHPRHLSQHVGGFVLTKRRLDETVP 500

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--VKVDLSLIP 602
            +      D    +++   I+   L+K D L L  LT +Q++   L         DL+ +P
Sbjct: 501  IGNAAMKDRTFIEWDKDDIDSLKLMKVDILALGMLTAIQRAFGMLRADHGQPITDLADVP 560

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             +    Y +L+   ++G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  
Sbjct: 561  VEVKGVYDMLSVADSVGVFQVESRAQMSMLPRLKPNKFYDLVIEVAIVRPGPIQGDMVHP 620

Query: 661  YNNRKNGKEKIVSI--------HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            Y  R+ G EK               +  +L  T GV ++QEQ M +A   + ++  EAD 
Sbjct: 621  YLRRRQGLEKAEWPAPSPEHGHKDELREILGNTFGVPLFQEQAMSLAIEAAKFTPDEADG 680

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LR+AM   K   +  + +++F+ G  + G  +  A   F+ +  F  YGF +SHAA++A 
Sbjct: 681  LRKAMATFKNLGDPGEYRDKFVEGMVRRGYERDFATRCFKQIEGFGSYGFPESHAASFAK 740

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-- 829
            + Y +AW+K  +P  F AA +  +     +  +  +DAR+  +++  P V     D    
Sbjct: 741  LVYISAWIKWAWPDVFCAALINSQPMGFYQPAQLVRDAREHGVEVRAPDVLMSDWDCTLE 800

Query: 830  ---VGDNRIYYSLAAIKGVGTTTARHI---------MEASADKPFDSLED---------F 868
               +          A +  GT   R +              D+ F    D         F
Sbjct: 801  GVSIAQTSTVIPDEAQRRSGTDPERRVSGGPGSSRSALVRDDRAFQPASDKLFNPDTRPF 860

Query: 869  CSRVD--------SKKLNRRVLESLVFAGALDCFGYSR-------------MQLLQSLDN 907
               V          K+ + +++E +   GA     ++R                  S   
Sbjct: 861  WKAVRLGLRQIKGLKEDDAKLIEEVRAEGARTPADFARAGVSQRGLELLAEADAFASAGL 920

Query: 908  IQKYAQWVEK-----NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             ++ A W  K      + +    + A     F   + L   ++     +   + R     
Sbjct: 921  TRRDALWAVKGLKGEAKVDSQAPLLAGLP-LFDTAVALPTMALP---QQVAEDYRTTSLS 976

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
               HPL  ++P+L ++ +   E       G  + +  +V+ +Q+  T KG  + ++T  +
Sbjct: 977  LKAHPLRFFRPMLDQLNVTPAERLKGVRNGRKVSVGGLVLIRQRPGTAKG--VVFLTLED 1034

Query: 1023 PAKEYEANFF 1032
                  A  +
Sbjct: 1035 ETGVANAVVW 1044


>gi|159042658|ref|YP_001531452.1| DNA polymerase III subunit alpha [Dinoroseobacter shibae DFL 12]
 gi|157910418|gb|ABV91851.1| DNA polymerase III, alpha subunit [Dinoroseobacter shibae DFL 12]
          Length = 994

 Score =  727 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/999 (25%), Positives = 434/999 (43%), Gaps = 73/999 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAG 66
           FV L   S+++ L GA    +   K A    PA AI D N++   +    +    A    
Sbjct: 2   FVELCALSNFTFLTGASHPEDYAQKAALLGLPAFAIADVNSVAGIVRAHTELKEIARQID 61

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS--------------TAEGYQRL 112
           +      +            ++       +P ++                      + RL
Sbjct: 62  LCATAEARDGPIGPPWPGPRSEDSAAVRNLPRLLPAARLRLREGTEITALPEDRAAWGRL 121

Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             L++        K    + L+ + +      ++L G    P  +     +   AE    
Sbjct: 122 SRLLTLGQRR-APKGRCHLDLADVLDEADGMQLLLHGLPEAPPVQLGAGRTWPQAEA--- 177

Query: 173 TFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
              + F  ++ + +   + G DR R  +   LA T  LP VA+   LF         DVL
Sbjct: 178 -LTRRFPGKVSLLMTPAYDGQDRVRFDRWAALADTLGLPTVASAAPLFHCATHRRLADVL 236

Query: 232 MAVAHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            A+ +   V    R  +   +  L++ +EM+ +F    +A+  T EIA RCSF L     
Sbjct: 237 TAIRNGCRVEDLGRTAQAHAEQRLRSEAEMLRLFRGHEDAVHRTAEIAARCSFCLSQLRY 296

Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             P           +  ++ L   A  GL  R   GA  K       R+ LD EL +I +
Sbjct: 297 EYP-----SETRGGETAQDRLSRLAHEGLRWRYRNGAPPK------VRKMLDHELRLIGK 345

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           + ++ YFL V D + +A+  +I +  GRGS A SV  Y L IT + P   +++FERF++ 
Sbjct: 346 LGYAPYFLTVNDIVAFARSRDI-LCQGRGSAANSVVCYCLGITSVSPEVGTMVFERFVSE 404

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            R   PD D+DF  +RR+EVI+++  +YG  R     T    + K A+R+VGRA+ +   
Sbjct: 405 ARDEPPDIDVDFEHERREEVIQHIYERYGRHRAGLCATVIHYRGKRAVREVGRAMGLSSD 464

Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTH 528
            +  L   I    +         +++R RE  L   D  + + +++  +++G  RH S H
Sbjct: 465 TLSALSSQIWGFGSVRG-----IEETRLREIGLDPTDRRLRQTIDLIYRIQGFPRHLSQH 519

Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
             G +I +  L +LVP+      D  V  ++   ++  G++K D L L  L+ ++K+ D 
Sbjct: 520 VGGFIITEGRLDELVPVENATMVDRTVVCWDKDDLDSLGILKIDILALGMLSCVRKAFDL 579

Query: 589 LAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
           +A     K  L+ +P +D   Y +L    ++G+FQ+ES      L  M+P C  D++  V
Sbjct: 580 IAHHHGAKFSLATLPVEDPAVYDMLCRADSIGVFQVESRAQMNFLPRMRPRCFYDLVIQV 639

Query: 648 SLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
           ++ RPGPI  D +  +  R+NG+E++      +  +L +T GV ++QEQ MQIA + +G+
Sbjct: 640 AIVRPGPIQGDMVHPFIRRRNGEEQVEFPSDALGEVLSKTLGVPLFQEQAMQIAIVGAGF 699

Query: 706 SLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
             SEAD LRRA+   K    + + + RF+ G ++NG     A   F  +  F  YGF +S
Sbjct: 700 DPSEADRLRRALATFKKHGNVSEFRTRFLKGMAQNGYDTAFAERCFSQIEGFGSYGFPES 759

Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
           HAA++A++ Y +AW+K H+P  F  A +  +        +  +DAR+  + + P  VN  
Sbjct: 760 HAASFALLVYASAWIKCHHPGIFACALLNAQPMGFYAPAQIMRDAREHGVTVRPVCVNAS 819

Query: 825 CVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
             D  +  +      +      +KG+    A  ++ A  +  + ++ D   R     L +
Sbjct: 820 FWDNTMEPDGQGGLALRLGFRQVKGLAQEDAEWLVSARGNG-YGTVADLWRRA---GLGQ 875

Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE---KGTFSD 936
            VL  L  A A    G  R   L     I+  A             +F+ +   +G    
Sbjct: 876 AVLTRLAEADAFAELGLGRRDALWQARAIRGDA----------PLPLFSGDMDGEGGAEP 925

Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            + L   S+    V    +   +      HP+ + + +L
Sbjct: 926 PVVLPPMSLGEEVV---EDFVAMRLSLRAHPVALLRHVL 961


>gi|149007158|ref|ZP_01830822.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP18-BS74]
 gi|307127553|ref|YP_003879584.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae 670-6B]
 gi|147761196|gb|EDK68163.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP18-BS74]
 gi|306484615|gb|ADM91484.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae 670-6B]
 gi|332075509|gb|EGI85977.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae GA17545]
          Length = 1033

 Score =  727 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1023 (29%), Positives = 490/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +      QG+++  +
Sbjct: 63   GLEMTVFVDD-------------QGVNLRFLALSSVGYQQLMKLSTA---KMQGEKTWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++I    +I+                               F     + L    G
Sbjct: 107  LSQYLEDIA---VIV-----------------------------PYFDRVESLEL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++           D E   VL A+  +  + +   P  +  
Sbjct: 131  CDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSRQ 188

Query: 252  HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F    P+AL+N  ++    S+ L      LPRF               
Sbjct: 189  DVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  DLFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  ASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    
Sbjct: 709  IMLNSANSD------YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E     P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  ALWIIEHR---PYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ +        +  ++F     ++ +              +F  EQ +LG   S HPL 
Sbjct: 820  EFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|149019479|ref|ZP_01834798.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP23-BS72]
 gi|147930854|gb|EDK81834.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP23-BS72]
          Length = 1033

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1023 (29%), Positives = 491/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +      QG ++  +
Sbjct: 63   GLEMTVFVDD-------------QEVNLRFLALSSVGYQQLMKLSTA---KMQGVKTWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++I    +I+                               F     + L    G
Sbjct: 107  LSQYLEDIA---VIV-----------------------------PYFDRVESLEL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++           D E   VL A+  +  + +   P  +  
Sbjct: 131  CDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSRQ 188

Query: 252  HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F +  P+AL+N  ++    S+ L      LPRF               
Sbjct: 189  DVFISASSLEKLFQECFPQALDNLEKLISGISYDLDTSL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  ALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  ASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    
Sbjct: 709  IMLNSANSD------YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  ALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ +        +  ++F     ++ +              +F  EQ +LG   S HPL 
Sbjct: 820  EFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|168490982|ref|ZP_02715125.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            CDC0288-04]
 gi|183574706|gb|EDT95234.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            CDC0288-04]
          Length = 1033

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/1023 (28%), Positives = 490/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +      QG+++  +
Sbjct: 63   GLEMTVFVDD-------------QEVNLRFLALSSVGYQQLMKLSTA---KMQGEKTWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++I    +I+                               F     + L    G
Sbjct: 107  LSQYLEDIA---VIV-----------------------------PYFDRVESLEL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++           D E   VL A+  +  + +   P  +  
Sbjct: 131  CDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSRQ 188

Query: 252  HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F    P+AL+N  ++    S+ L      LPRF               
Sbjct: 189  DVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G + KG  +++Y+ RL+ EL+VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGLVQKGLTSKEYQDRLEQELSVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  +I+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFDIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  ALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  ASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++   S+NT     K+ +  IY  L +IKGV    
Sbjct: 709  VMLNSSNSD------YLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIKGVSNDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  ALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ +        +  ++F     ++ +              +F  EQ +LG   S HPL 
Sbjct: 820  EFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|221231672|ref|YP_002510824.1| DNA polymerase III alpha subunit [Streptococcus pneumoniae ATCC
            700669]
 gi|220674132|emb|CAR68651.1| DNA polymerase III alpha subunit [Streptococcus pneumoniae ATCC
            700669]
          Length = 1033

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1023 (29%), Positives = 491/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +      QG ++  +
Sbjct: 63   GLEMIVFVDD-------------QEVNLRFLALSSVGYQQLMKLSTA---KMQGVKTWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++I    +I+                               F     + L    G
Sbjct: 107  LSQYLEDIA---VIV-----------------------------PYFDRVESLEL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++           D E   VL A+  +  + +   P  +  
Sbjct: 131  CDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSRQ 188

Query: 252  HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F +  P+AL+N  ++    S+ L      LPRF               
Sbjct: 189  DVFISASSLEKLFQECFPQALDNLEKLISGISYDLDTSL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  ALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  ASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    
Sbjct: 709  IMLNSANSD------YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  ALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ +        +  ++F     ++ +              +F  EQ +LG   S HPL 
Sbjct: 820  EFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|307709383|ref|ZP_07645841.1| DNA polymerase III subunit alpha [Streptococcus mitis SK564]
 gi|307619966|gb|EFN99084.1| DNA polymerase III subunit alpha [Streptococcus mitis SK564]
          Length = 1033

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1023 (29%), Positives = 489/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRVAKEYGYTHLAMMDIDNLYGAFDFLEVTKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++++                    ++  L  ++ GYQ+L++L +      QG++S  +
Sbjct: 63   GLEMNV-------------LVDAQEVNLRFLALSSVGYQQLMKLSTA---KMQGEKSWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++I    +I+                               F     +NL    G
Sbjct: 107  LSQYLEDIA---VIV-----------------------------PYFDGLELLNL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++           D E   VL A+  +  + +   P  +  
Sbjct: 131  CDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLSLREV--PLRSRQ 188

Query: 252  HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F    P+AL+N  ++    S+ L      LPRF               
Sbjct: 189  DVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G   KG  +++Y+ RLD EL VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGLAQKGLTSKEYQDRLDQELAVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKH--G 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAKTEGIHLKVEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  ALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  ASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    
Sbjct: 709  VMLNSANSD------YLTDALEAGFEVAPLSINTIPYHDKIANKSIYLGLKSIKGVSNDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  ALWIIE---NRPYSNIEDFIAKLPENFLKLPLLEPLVKVGLFDSFEKNRQKVFNNLVNLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ +        +  ++F     ++ +              +F  EQ +LG   S HPL 
Sbjct: 820  EFVK--------ELGSLFGDTIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIASKAIYSITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQVDDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|145294807|ref|YP_001137628.1| error-prone DNA polymerase [Corynebacterium glutamicum R]
 gi|140844727|dbj|BAF53726.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1017

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/1030 (26%), Positives = 449/1030 (43%), Gaps = 96/1030 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F  L   SSY+ L GA   ++++ +       A+++ D +  + A+ F++ A  AG+  
Sbjct: 21   PFAELHATSSYNFLTGASDPSDVVVQAKKLGLVALSVMDRDGFYGAVRFAEAAAEAGMHT 80

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +                  G         + +L    EGY++L  L+S   +    K  V
Sbjct: 81   VY-----------------GAELSLQEGVLTVLCKNPEGYKKLSHLISDAKMATGEKGEV 123

Query: 130  RIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            R   L  + E      ++L G               Q  +K          + + +    
Sbjct: 124  RYPPLPMVAEHAAGDWVVLAG--------------FQWLDKIDYVIDCFKSENIVLEFGS 169

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
                 D  R   + +     +L  + + N    +           A+AH   ++  +   
Sbjct: 170  TMTPEDADRNEYLRRTQVKFQLRGILSTNPESAARASVRLAGAKQALAHKMSLADAESEL 229

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  ++++   ++    D  + +  TVE+A  C+F L + AP LP++        +  
Sbjct: 230  HPMGTTWMRSGDTLLKAHPDYADLIATTVELAAECAFTLDLVAPNLPKWDTP----GEHT 285

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E + L +     ++ R    +      A     ++D+EL VI ++ F GYFLIV D +++
Sbjct: 286  EMSWLAHLVSTRIDTRYVGRSADIKARA---ATQIDYELGVIEKLGFPGYFLIVNDLVEF 342

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             + +NI +  GRGS A S   + L IT+ +P+   LLFERFL+PDR   PD DID    R
Sbjct: 343  CRDSNI-LCQGRGSAANSAVCFVLGITNAEPISAGLLFERFLSPDRDGPPDIDIDIESGR 401

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+YV  KYG +  AQ+    + + K A+RD  RAL  P    D   K     P   
Sbjct: 402  REEVIQYVYEKYGRDNAAQVANVITYRTKGAMRDAARALGYPQGAADAWAKGTSEPP--- 458

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                                  D +LE++ + +G  RH   H+ G+VI DRP++ +VP+ 
Sbjct: 459  ----------------------DDVLELAAQFKGQPRHLGIHSGGMVICDRPIADVVPVE 496

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 +  V Q++      AGL+KFD LGL  L  +   LD +A  RG K++L  +   +
Sbjct: 497  WARMDNRSVVQWDKDDCATAGLVKFDLLGLGMLEAIHHMLDLVAEHRGKKINLWELDLAE 556

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
             E Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI       Y  
Sbjct: 557  PEVYDMLCKADAVGVFQVESRAQLSTLPRLKPRTFFDLVVEVALIRPGPIQGGSVHPYLR 616

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R+ G+E I   HP+++  L +T G+ ++QEQ+MQ+A   +G+S  EAD LRRAM  K+  
Sbjct: 617  RRAGEEAITYDHPVLEKSLGKTLGIPLFQEQLMQVAVDAAGFSGGEADSLRRAMGSKRSP 676

Query: 723  EEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            E M   + RF  G    NGI    A  ++  +  FA YGF +SH+ ++A + Y +AW K 
Sbjct: 677  ERMAALRSRFFQGLKDTNGIVGETAEKLWNKIVAFAAYGFPESHSQSFASLVYFSAWYKY 736

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP EF    +  +       +    DAR+  + I+P +VN   V+    +  I   L  
Sbjct: 737  HYPAEFCVGLLRAQPMGFYSPQSLISDARRHGVSILPITVNDSGVEADAPNGAIRLGLNL 796

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +KG+G   A+ I +   + PFDS+ D   R D    N   +E+L  AGA+DC G  R Q 
Sbjct: 797  VKGLGHDAAQRIED---NAPFDSIPDLSRRADL---NVAQVEALARAGAVDCLGVGRRQA 850

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L         A      +T     + A E          E  +   S+     + +    
Sbjct: 851  LWQ-------AGVAATEKTGMLPGLSAIEAPALPGMSAFELMATNISATGVTADYQ---- 899

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
                 P+ + +  + ++GI   +  +    G  +R+A +V  +Q+ +T  G    ++   
Sbjct: 900  -----PMALIRERMEELGIVPADRLLEVEDGTRLRIAGIVTHRQRPQTASGLT--FLGME 952

Query: 1022 EPAKEYEANF 1031
            +         
Sbjct: 953  DETGLMNVMV 962


>gi|225861211|ref|YP_002742720.1| DNA polymerase III DnaE [Streptococcus pneumoniae Taiwan19F-14]
 gi|298254248|ref|ZP_06977834.1| DNA polymerase III DnaE [Streptococcus pneumoniae str. Canada
            MDR_19A]
 gi|225728112|gb|ACO23963.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            Taiwan19F-14]
          Length = 1033

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1023 (29%), Positives = 491/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +      QG+++  +
Sbjct: 63   GLEMTVFVDD-------------QEVNLRFLALSSVGYQQLMKLSTA---KMQGEKTWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++I    +I+                               F     + L    G
Sbjct: 107  LSQYLEDIA---VIV-----------------------------PYFDRVESLEL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++           D E   VL A+  +  + +   P  +  
Sbjct: 131  CDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSRQ 188

Query: 252  HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F    P+AL+N  ++    S+ L      LPRF               
Sbjct: 189  DVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  DLFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  VSFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++   S+NT     K+ +  IY  L +IKGV    
Sbjct: 709  VMLNSSNSD------YLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIKGVSNDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  ALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ +        +  ++F     ++ +              +F  EQ +LG   S HPL 
Sbjct: 820  EFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|328881404|emb|CCA54643.1| DNA polymerase III alpha subunit [Streptomyces venezuelae ATCC 10712]
          Length = 1170

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/1081 (25%), Positives = 466/1081 (43%), Gaps = 90/1081 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL   S YSL  GA     +  + A     A+A+TD + L   + F++     GI+
Sbjct: 2    PGFTHLHTASGYSLRYGASHPERLAARAAERGMDALALTDRDTLAGTIRFAKACAKEGIR 61

Query: 69   PIIGCQLDIDM---------------QDNLKMTNQGKTP--------------FPTVPSI 99
            P+ G  L  +                         G+ P                + P  
Sbjct: 62   PLFGVDLAYEPTTPGPGRTPAASPGGDPRDVRRAPGRGPQDIRRVPVRGGAFVDESAPRA 121

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            + L  +  G+  L  +++  +    G     +  S L +   + + +L G  +  + RA 
Sbjct: 122  LFLARSRAGWASLCAMITAAHA--GGGDHPLLPWSALCD---DDVFVLLGP-ASDVGRAL 175

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR----GYDRYRES-QVVQLAYTHELPLVAT 214
                   A + L  +++ +GD L +    H     G    R + + V  A    +  V  
Sbjct: 176  AAGRPDRAVRLLAPWRERYGDALRLTAVDHGRSGTGPGSLRLAARTVGFAAEQGVRPVIG 235

Query: 215  NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA---- 270
            N   +         DVL +     V     +   + + +LK    M +    + EA    
Sbjct: 236  NAVRYADPGQGPVADVLDSAR-RLVPVDPRKELDSGEAWLKGADGMRAAAERIVEAAGFR 294

Query: 271  -------LENTVEIARRCSFILQVHAPILP-RFIEKECDDIQKEEENELRNKAVAGLEVR 322
                   LE T  +A  C    +    I    F E      +          A   L  R
Sbjct: 295  RDTAHRLLEQTATVAADCLVDPEDDLGIGSAHFPEPHLVGAE-------YRTAQRVLASR 347

Query: 323  LAQGAIAKGYHAQ-DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
             A G I KGY  +  Y  R+  EL+VIA  +F+ YFL VA  +   ++  I V   RGSG
Sbjct: 348  AAAGMILKGYEKRGAYWDRMHQELDVIAHHRFAPYFLTVAQVVDDVREMGIRVA-ARGSG 406

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            AGS+  + L I   DP+   LL ERFL+  R ++PD DID    RR EV R + +++G  
Sbjct: 407  AGSLVNHLLGIAHADPVEHGLLMERFLSKRRTALPDIDIDVESARRLEVYRAIIDRFGTA 466

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
            RVA +    + + + A+RDVG AL +  + +DR+ K  P+  A    L A+ +    RE 
Sbjct: 467  RVATVAMPETYRVRHAVRDVGAALSLDPADIDRIAKAFPHIRARDA-LAALDELPELREL 525

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
                    +L E+ + L+ L R  + H  G+++ D  L    P+        P++QF+ +
Sbjct: 526  AGERQKYGKLWELVEALDALPRGTAMHPCGVLLSDASLLARTPVVPTSGEGFPMSQFDKE 585

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
             +E  GL+K D LG++  + +  ++  + +  G + D+  +P  D ETY L+ +  TLG 
Sbjct: 586  DVEDLGLLKLDVLGVRMQSAMAHAVAEVERATGTRPDIDAVPDGDPETYRLIRSTETLGC 645

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI 678
            FQ+ES G R  +  +QP    D++  +SL+RPGP+  D +  +   ++G+  +   HP +
Sbjct: 646  FQIESPGQRDLVGRLQPATFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRYPHPDL 705

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  L+ET GV+++ EQ+++I ++++G    EAD +RR +     E   + K  F   A+ 
Sbjct: 706  EETLRETYGVVVFHEQIIEIVRIMTGCRRDEADQVRRGLS--DPESQGRIKLWFTREAAA 763

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             G +  +    +E++A F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +   
Sbjct: 764  RGYADEVVARTWEIVAAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGM 823

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-------DNRIYYSLAAIKGVGTTTAR 851
              K +    DAR+  + ++P  VN   V  ++           +   L  + G+    + 
Sbjct: 824  YPK-RLLLADARRRGVPVLPLDVNRSAVAHRIELVSESKVRWGLRLGLTDVHGISEAESA 882

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
             I    A +P+ SL DF  R   +     V E L   GALD FG +R  LL  L  +++ 
Sbjct: 883  RI---EAGQPYASLLDFWERARPR---TPVAERLAQVGALDAFGANRRDLLLHLTELRR- 935

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
                          +    +G  +  + L      + + R   E  +LG   S H +  +
Sbjct: 936  -IQRGAASHGGQLPL---AQGGKTAPVGLPDL---DETERLSAELGILGMDASRHLMGDH 988

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
               LR++G+   +    T  G  + +A    + Q    R G R+ + T  +     +  F
Sbjct: 989  HAFLRELGVVSAQRLRDTPHGRTVLVAGAKAATQTPPIRSGKRVIFTTLDDGTGLVDLAF 1048

Query: 1032 F 1032
            F
Sbjct: 1049 F 1049


>gi|298503097|ref|YP_003725037.1| DNA polymerase III DnaE [Streptococcus pneumoniae TCH8431/19A]
 gi|298238692|gb|ADI69823.1| DNA polymerase III DnaE [Streptococcus pneumoniae TCH8431/19A]
          Length = 1042

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/1034 (29%), Positives = 495/1034 (47%), Gaps = 103/1034 (9%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            + +  EK      L   + YS +E  +S+   +          +A+ D +NL+ A +F +
Sbjct: 1    MRRIEEKCKLIAQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLE 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
                 GI P++G ++ + + D                ++  L  ++ GYQ+L++L +   
Sbjct: 61   ITKKYGIHPLLGLEMTVFVDD-------------QEVNLRFLALSSVGYQQLMKLSTA-- 105

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
               QG+++  +   +L++I    +I+                               F  
Sbjct: 106  -KMQGEKTWSVLSQYLEDIA---VIV-----------------------------PYFDR 132

Query: 181  RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
               + L    G D Y       LA     P++           D E   VL A+  +  +
Sbjct: 133  VESLEL----GCDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPL 188

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +   P  +      + S +  +F    P+AL+N  ++    S+ L      LPRF    
Sbjct: 189  REV--PLRSRQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSL-KLPRFNP-- 243

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                           AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+
Sbjct: 244  ------------ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLV 291

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++ + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD D
Sbjct: 292  VWDLLRFGRSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDID 351

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID     R + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I
Sbjct: 352  IDIPDIYRPDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKI 411

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                       A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L
Sbjct: 412  SFRDNLK---SAYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDL 468

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
            +  +P+      ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +
Sbjct: 469  TNYIPL--KYGDEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKI 526

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I  +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I
Sbjct: 527  EEIDLEDKETLDLFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYI 586

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMG
Sbjct: 587  NNFVARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMG 646

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK    M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+
Sbjct: 647  KKDASAMHEMRVSFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAY 706

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
             KTHYP  F    +     +      +  DA +   ++   S+NT     K+ +  IY  
Sbjct: 707  FKTHYPAIFYQVMLNSSNSD------YLIDALEAGFEVASLSINTIPYHDKIANKAIYLG 760

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L +IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R
Sbjct: 761  LKSIKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNR 817

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             ++  +L N+ ++ +        +  ++F     ++ +              +F  EQ +
Sbjct: 818  QKVFNNLANLFEFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQEL 863

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG   S HPL      +    I            +   +   V   +  +T+KG  + ++
Sbjct: 864  LGIGVSKHPLQ----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFL 919

Query: 1019 TFSEPAKEYEANFF 1032
               +  K+ +   F
Sbjct: 920  QADDSKKKLDVTLF 933


>gi|302546169|ref|ZP_07298511.1| LOW QUALITY PROTEIN: DNA polymerase III, alpha subunit [Streptomyces
            hygroscopicus ATCC 53653]
 gi|302463787|gb|EFL26880.1| LOW QUALITY PROTEIN: DNA polymerase III, alpha subunit [Streptomyces
            himastatinicus ATCC 53653]
          Length = 880

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/706 (36%), Positives = 393/706 (55%), Gaps = 29/706 (4%)

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
             FL+VADFI WAK N I VGPGRGS AGS+ +YAL ITD+DP+   L+FERFLNP+R+SM
Sbjct: 55   NFLVVADFIMWAKNNGIAVGPGRGSAAGSIVSYALGITDLDPVEHGLIFERFLNPERVSM 114

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD DIDF + RR EVIRYV  KYG ++VAQI T+G+++AK A++D  R L  PY+  DR+
Sbjct: 115  PDVDIDFDERRRGEVIRYVTEKYGADKVAQIGTYGTIKAKNAIKDSARVLGYPYAMGDRI 174

Query: 476  CKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAS 526
             K +P D     + L  I D+           R     +P V ++++ ++ +EGL R   
Sbjct: 175  TKAMPADVLGKGIPLSGITDEKHPRYSEAGEVRGMYENEPDVKKVIDTARGIEGLVRQMG 234

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HAAG+++    ++  VP++        VTQ++    E  GL+K DFLGL+ LT++  ++
Sbjct: 235  VHAAGVIMSSETVTDHVPVFSPKNDGQVVTQWDYPTCESLGLLKMDFLGLRNLTIMDDAV 294

Query: 587  DFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
              + A +GV + +  +  DD +T+ LL    TLG+FQ +   MR  L  M+PD  EDI A
Sbjct: 295  KMVRANKGVDLKMLDLSLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRMMKPDHFEDISA 354

Query: 646  LVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIA 699
            + +LYRPGP+     + Y  RKNG+++I  IHP ++  LKE    T G+I+YQEQV + A
Sbjct: 355  VSALYRPGPMGMNSHINYALRKNGQQEITPIHPELEEPLKEVLGITYGLIVYQEQVQKAA 414

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q+L+GYSL +AD+LRRAMGKK +E +DK+   F  G  + G S      ++++L  FA Y
Sbjct: 415  QVLAGYSLGQADLLRRAMGKKKQEVLDKEFVPFQKGCRERGYSDEAIQAVWDVLVPFAGY 474

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+  I+++ P
Sbjct: 475  AFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVRDDKDKSAVYLNECRRMGIKVLTP 534

Query: 820  SVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKL 877
            +VN    +F   GD+ I + L A++ VG      I+        + S  D+  +V++   
Sbjct: 535  NVNESEANFTAQGDDVILFGLTAVRNVGQNVVEAIIRGRKSKGKYSSFPDYLDKVEAVVC 594

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--------AH 929
            N+R  ESL+ AGA D  G++R  L    + +      V++       ++F          
Sbjct: 595  NKRTTESLIKAGAFDEMGHTRKGLTAHYETMIDNVVAVKRKEAEGQFDLFGGMGGEGGDG 654

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-- 987
            E   F   I        + +     E+ +LG Y S HPL   + +L         +    
Sbjct: 655  EAPGFGLDIEFSDI-EWDKAYLLAQEREMLGLYVSDHPLFGIEHVLNDKADAAISQLTGG 713

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 714  EHADGAIVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 759


>gi|168494319|ref|ZP_02718462.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            CDC3059-06]
 gi|183575675|gb|EDT96203.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            CDC3059-06]
 gi|327389178|gb|EGE87523.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae GA04375]
          Length = 1033

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1023 (29%), Positives = 492/1023 (48%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P+I
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLI 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +      QG+++  +
Sbjct: 63   GLEMTVFVDD-------------QEVNLRFLALSSVGYQQLMKLSTA---KMQGEKTWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++I    +I+                               F     + L    G
Sbjct: 107  LSQYLEDIA---VIV-----------------------------PYFDRVESLEL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++           D E   VL A+  +  + +   P  +  
Sbjct: 131  CDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSRQ 188

Query: 252  HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F +  P+AL+N  ++    S+ L      LPRF               
Sbjct: 189  DVFISASSLEKLFQECFPQALDNLEKLISGISYDLDTSL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  ALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  ASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++   S+NT     K+ +  IY  L +IKGV    
Sbjct: 709  VMLNSSNSD------YLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIKGVSNDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  ALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ +        +  ++F     ++ +              +F  EQ +LG   S HPL 
Sbjct: 820  EFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|116516844|ref|YP_816273.1| DNA polymerase III DnaE [Streptococcus pneumoniae D39]
 gi|116077420|gb|ABJ55140.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae D39]
          Length = 1033

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1023 (29%), Positives = 492/1023 (48%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +      QG+++  +
Sbjct: 63   GLEMTVFVDD-------------QEVNLRFLALSSVGYQQLMKLSTA---KMQGEKTWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++I    +I+                               F     + L    G
Sbjct: 107  LSQYLEDIA---VIV-----------------------------PYFDRVESLEL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++           D E   VL A+  +  + +   P  +  
Sbjct: 131  CDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSRQ 188

Query: 252  HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F +  P+AL+N  ++    S+ L      LPRF               
Sbjct: 189  DVFISASSLEKLFQECFPQALDNLEKLISGISYDLDTSL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  ALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  ASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++   S+NT     K+ +  IY  L +IKGV    
Sbjct: 709  VMLNSSNSD------YLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIKGVSNDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  ALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ +        +  ++F     ++ +              +F  EQ +LG   S HPL 
Sbjct: 820  EFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|148988324|ref|ZP_01819771.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP6-BS73]
 gi|148993709|ref|ZP_01823156.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP9-BS68]
 gi|168490330|ref|ZP_02714529.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP195]
 gi|147926005|gb|EDK77079.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP6-BS73]
 gi|147927789|gb|EDK78812.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP9-BS68]
 gi|183571329|gb|EDT91857.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP195]
 gi|332073225|gb|EGI83704.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae GA17570]
          Length = 1033

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1023 (29%), Positives = 491/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +      QG+++  +
Sbjct: 63   GLEMTVFVDD-------------QGVNLRFLALSSVGYQQLMKLSTA---KMQGEKTWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++I    +I+                               F     + L    G
Sbjct: 107  LSQYLEDIA---VIV-----------------------------PYFDRVESLEL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++           D E   VL A+  +  + +   P  +  
Sbjct: 131  CDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSRQ 188

Query: 252  HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F    P+AL+N  ++    S+ L      LPRF               
Sbjct: 189  DVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGQSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  ALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  + P+++ +L  T G+++YQEQVMQ+AQ L+G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRLAGFSLGKADILRRAMGKKDASAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  ASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++   S+NT     K+ +  IY  L +IKGV    
Sbjct: 709  VMLNSSNSD------YLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIKGVSNDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  ALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ +        +  ++F     ++ +              +F  EQ +LG   S HPL 
Sbjct: 820  EFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|307704719|ref|ZP_07641617.1| DNA polymerase III subunit alpha [Streptococcus mitis SK597]
 gi|307621725|gb|EFO00764.1| DNA polymerase III subunit alpha [Streptococcus mitis SK597]
          Length = 1033

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1023 (29%), Positives = 486/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S++  +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIDKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIYPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + +                  ++  L  ++ GYQ+L++L +      QG++S  +
Sbjct: 63   GLEMTVFV-------------DAQEVNLRFLALSSVGYQQLMKLSTA---KMQGEKSWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++      I +       I+                                  G
Sbjct: 107  LSQYLED------IAVIVPYFEEIESLNL------------------------------G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            YD Y       L      P++           D E   VL A+  +  + +   P  +  
Sbjct: 131  YDYYIGVYPETLTSEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSRQ 188

Query: 252  HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              L + S +  +F    P+ALEN  ++    S+ L      LPRF               
Sbjct: 189  DVLISASSLEKLFQERFPQALENLEKLISGISYDLDTSL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G   KG  +++Y+ RLD EL VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGLAQKGLSSKEYQDRLDQELAVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKH--G 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAKIEDIHLKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  ALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  ASFIQGSLEAGHTAEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    
Sbjct: 709  VMLNSANSD------YLTDALEAGFEVAPLSINTIPYHDKIANKSIYLGLKSIKGVSKDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  ALWIIE---NRPYSNIEDFIAKLPDNYLKLPLLEPLVKVGLFDLFEKNRQKVFNNLVNLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ +        +  ++F      + +              +F  EQ +LG   S HPL 
Sbjct: 820  EFVK--------ELGSLFGDTIYNWQES------EDWTDQEKFYMEQELLGIGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIASKAIYPITPIGKLSENSYAIILVEVQKIKVIRTKKGENMAFLQVDDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|168485842|ref|ZP_02710350.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            CDC1087-00]
 gi|183571027|gb|EDT91555.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            CDC1087-00]
          Length = 1033

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/1023 (28%), Positives = 487/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +      QG+++  +
Sbjct: 63   GLEMTVFVDD-------------QGVNLRFLALSSVGYQQLMKLSTA---KMQGEKTWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++I    +I+                               F     + L    G
Sbjct: 107  LSQYLEDIA---VIV-----------------------------PYFDRVESLEL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++           D E   VL A+  +  + +   P  +  
Sbjct: 131  CDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSRQ 188

Query: 252  HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F    P+AL+N  ++    S+ L      LPRF               
Sbjct: 189  DVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I       +   
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKL--- 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMRELLAETEGIHLKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  ALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  +   ++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLDSALEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  ASFIQGSIEAGHTAEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++   S+NT     K+ +  IY  L +IKG+    
Sbjct: 709  VMLNSSNSD------YLIDALEAGFEVASLSINTIPYHDKIANKSIYIGLKSIKGLSKDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E     P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  ALWIIEHR---PYSNIEDFLAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ + +         ++F     ++ D              +F  EQ +LG   S HPL 
Sbjct: 820  EFVKVL--------GSLFGETIYSWQDS------EDWMEQEKFYMEQELLGVGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIANKAIYPITPISNLSENSYAIILVEVQKIKVIRTKKGENMAFLQVDDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|288803004|ref|ZP_06408440.1| DNA polymerase III, alpha subunit [Prevotella melaninogenica D18]
 gi|288334521|gb|EFC72960.1| DNA polymerase III, alpha subunit [Prevotella melaninogenica D18]
          Length = 871

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/867 (32%), Positives = 439/867 (50%), Gaps = 91/867 (10%)

Query: 3   QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           + +     +VHL VH++YS+L+G   +  ++DK  AD    +AITD   +F   EF+   
Sbjct: 12  KRISSMEDYVHLHVHTNYSILDGQSKVTRLVDKAIADGMKGMAITDHGVMFGIKEFADYC 71

Query: 63  CA----------AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
                          +PI GC++ +  +              +   +++L     GY+ L
Sbjct: 72  AKVNKGRKEKGEEPFKPIFGCEMYVARRTMHDKDKS--MHDNSGYHLIVLAKNYTGYKNL 129

Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
           I+LVS  ++ D      R     L++   EGLI+ T   +G +      +  + A +   
Sbjct: 130 IKLVSNAWV-DGYYYRPRTDREQLEKYH-EGLIVCTACIAGEVPNKIIHDDIEGARESCE 187

Query: 173 TFKKLFGDRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLF 219
            + ++FGD  Y+ LQRH   D             +     +++ A  + + +V TN+  F
Sbjct: 188 WYHRVFGDDFYLELQRHEVKDPSLVANREAYPLQQKANKVLMKFAQEYGIKIVCTNDCHF 247

Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
             +E  EAHD L+ ++ +  +    R R +   + K R+EM  IFSD+PEA+ NT+EI  
Sbjct: 248 EDKETAEAHDHLLCLSTNEDLDDPKRMRYSKQEWFKTRAEMNEIFSDIPEAMTNTLEILN 307

Query: 280 RCSFILQVHAPILPRFIEKECDDIQKE--------------------------------- 306
           +       H PI+P F   E    ++E                                 
Sbjct: 308 KVETYNINHGPIMPFFPIPEDFGTEEEWKQKFSEGDLYKEFTTDENGESPLSPEEGQKVI 367

Query: 307 --------------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
                         E + L   A  G +             + + +  + FEL+V+  M 
Sbjct: 368 DRLGGYEKMYRIKFEADYLAKLAYDGAKKLYGD------PLSDEVKNHIRFELHVMKTMG 421

Query: 353 FSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
           F GYFLIV DFI  A+++ ++ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPD
Sbjct: 422 FPGYFLIVQDFINAARQDLDVMVGPGRGSAAGSVVAYCLGITQIDPLKYDLLFERFLNPD 481

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R+++PD D DF  D R  V+++V +KYGHE  A IIT+ ++  K +++DV R  ++P   
Sbjct: 482 RVNLPDIDTDFDDDGRGRVLQWVMDKYGHENCAHIITYSTMATKNSIKDVARVEKLPLDV 541

Query: 472 VDRLCKLIPNDPAHPVSL---QAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHAST 527
            + LCK IP      + +    AI      + A +++   +R  ++ ++ LEG  R    
Sbjct: 542 SNALCKAIPERLPDGMKMNLTNAIKCTPELQNAEVSEDIRERNTIKYAKMLEGTVRGTGI 601

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
           HA G +I   P+ + VP+      D     +PVTQ++   IE  GLIK DFLGLKTL+ L
Sbjct: 602 HACGFIICRNPIDEWVPISTATDPDFPEKKVPVTQYDGHVIESTGLIKMDFLGLKTLSEL 661

Query: 583 QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
           +++   + Q     +DL  IP DD  TY L     T+G FQ ES+GM++ L  + P   E
Sbjct: 662 KEACKVVKQTTGDVIDLEKIPIDDELTYQLYQRGQTVGTFQFESAGMQKYLRELHPTVFE 721

Query: 642 DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
           D+IA+ +LYRPGP+D I  +  RK+    +    P ++  LK+T G+ +YQEQVM +++ 
Sbjct: 722 DLIAMNALYRPGPMDYIPDFIRRKHDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQ 781

Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
           L+ ++  E+D LR+AMGKK+K  +DK K +FI    +NG    I   I+    KFA Y F
Sbjct: 782 LANFTRGESDALRKAMGKKMKAIVDKMKPKFIKQGQENGHDPQILEKIWSDWEKFASYAF 841

Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFL 788
           NKSHA  Y+ ++YQTA+MK HYP E++
Sbjct: 842 NKSHATCYSWVAYQTAYMKAHYPAEYI 868


>gi|225858693|ref|YP_002740203.1| DNA polymerase III DnaE [Streptococcus pneumoniae 70585]
 gi|225721617|gb|ACO17471.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae 70585]
          Length = 1033

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1023 (29%), Positives = 491/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +      QG+++  +
Sbjct: 63   GLEMTVFVDD-------------QEVNLRFLALSSVGYQQLMKLSTA---KMQGEKTWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++I    +I+                               F     + L    G
Sbjct: 107  LSQYLEDIA---VIV-----------------------------PYFDRVESLEL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++           D E   VL A+  +  + +   P  +  
Sbjct: 131  CDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSRQ 188

Query: 252  HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F    P+AL+N  ++    S+ L      LPRF               
Sbjct: 189  DVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  ALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  + P+++ +L  T G+++YQEQVMQ+AQ L+G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRLAGFSLGKADILRRAMGKKDASAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  ASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++ P S+NT     K+ +  IY  L +IKG+    
Sbjct: 709  IMLNSANSD------YVTDALEAGFEVAPLSINTIPYHDKIANKSIYIGLKSIKGLSKDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E     P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  ALWIIEHR---PYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDLFEKNRQKVFNNLANLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ +        +  ++F     ++ +              +F  EQ +LG   S HPL 
Sbjct: 820  EFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIASKAIYPITPIGNLSENSYAIILVEVRKIKVIRTKKGENMAFLQADDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|15900778|ref|NP_345382.1| DNA polymerase III DnaE [Streptococcus pneumoniae TIGR4]
 gi|14972370|gb|AAK75022.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae TIGR4]
          Length = 1042

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/1034 (29%), Positives = 495/1034 (47%), Gaps = 103/1034 (9%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            + +  EK      L   + YS +E  +S+   +          +A+ D +NL+ A +F +
Sbjct: 1    MRRIEEKCKLIAQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLE 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
                 GI P++G ++ + + D                ++  L  ++ GYQ+L++L +   
Sbjct: 61   ITKKYGIHPLLGLEMTVFVDD-------------QGVNLRFLALSSVGYQQLMKLSTA-- 105

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
               QG+++  +   +L++I    +I+                               F  
Sbjct: 106  -KMQGEKTWSVLSQYLEDIA---VIV-----------------------------PYFDR 132

Query: 181  RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
               + L    G D Y       LA     P++           D E   VL A+  +  +
Sbjct: 133  VESLEL----GCDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPL 188

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +   P  +      + S +  +F    P+AL+N  ++    S+ L      LPRF    
Sbjct: 189  REV--PLRSRQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSL-KLPRFNP-- 243

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                           AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+
Sbjct: 244  ------------ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLV 291

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++ + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD D
Sbjct: 292  VWDLLRFGQSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDID 351

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID     R + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I
Sbjct: 352  IDIPDIYRPDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKI 411

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                       A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L
Sbjct: 412  SFRDNLK---SAYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDL 468

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            +  +P+      ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +
Sbjct: 469  TNYIPL--KYGDEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKI 526

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I  +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I
Sbjct: 527  EEIDLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYI 586

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ L+G+SL +AD+LRRAMG
Sbjct: 587  NNFVARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRLAGFSLGKADILRRAMG 646

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK    M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+
Sbjct: 647  KKDASAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAY 706

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
             KTHYP  F    +     +      +  DA +   ++   S+NT     K+ +  IY  
Sbjct: 707  FKTHYPAIFYQVMLNSSNSD------YLIDALEAGFEVASLSINTIPYHDKIANKAIYLG 760

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L +IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R
Sbjct: 761  LKSIKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNR 817

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             ++  +L N+ ++ +        +  ++F     ++ +              +F  EQ +
Sbjct: 818  QKVFNNLANLFEFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQEL 863

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG   S HPL      +    I            +   +   V   +  +T+KG  + ++
Sbjct: 864  LGIGVSKHPLQ----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFL 919

Query: 1019 TFSEPAKEYEANFF 1032
               +  K+ +   F
Sbjct: 920  QADDSKKKLDVTLF 933


>gi|312115146|ref|YP_004012742.1| DNA polymerase III subunit alpha [Rhodomicrobium vannielii ATCC
            17100]
 gi|311220275|gb|ADP71643.1| DNA polymerase III, alpha subunit [Rhodomicrobium vannielii ATCC
            17100]
          Length = 1180

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/921 (26%), Positives = 399/921 (43%), Gaps = 48/921 (5%)

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            K   R+ L          ++         I R           + L T      DR+Y+ 
Sbjct: 205  KGECRLTLEDFLAFSEGQIVAALPPD--DIFRNPR--RMADFRRHLKTLAARLPDRVYLA 260

Query: 186  LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                 RG D  R +++   A    +PLVAT + L+         DVL  + H+  + +  
Sbjct: 261  ASHRFRGDDGQRIARLAAFADDLRVPLVATGDVLYHIPARRRLQDVLTCIRHTCTIDEAG 320

Query: 245  -RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R     + +LK  +EM  +F+  PEA+ NTV++A RC+F L       P  I    +  
Sbjct: 321  FRLVANAERHLKAPAEMARLFARYPEAVANTVKLAARCTFSLAELTYEYPEEIAPNGEAP 380

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            Q      L      GL  R + G            Q++  E  +IAR  ++ +FL V D 
Sbjct: 381  QAR----LERLTWEGLAWRYSDGV------PDTVAQQVRHEFELIARFDYAPFFLTVEDI 430

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+K NI +  GRGS A S   YAL IT +DP R +LLFERF++  R   PD D+DF 
Sbjct: 431  VRFARKKNI-LHQGRGSAANSAVCYALGITGVDPARSNLLFERFISDARHEPPDIDVDFE 489

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EVI+Y+ +++G  R     T    + + A+R+VG+AL +       L   +    
Sbjct: 490  HERREEVIQYIYSRFGRHRAGLCATVICYRTRGAVREVGKALGLSPDVTAALSGSVWGWS 549

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               V    +A          +DP +   LE++++L G  RH S H  G +I    L +LV
Sbjct: 550  DGGVDPGDLASLG----LDASDPRLILCLELTRELIGFPRHLSQHPGGFLIARGRLDELV 605

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+      D  +  ++   IE  G++K D L L  LT L K  D +       +  + +P
Sbjct: 606  PIENAAMKDRTIVSWDKDDIEALGMLKVDVLALGMLTCLAKGFDLIRAHYGRDLTPATVP 665

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             +D   Y +L+   ++G+FQ+ES   +  L  ++P    D++  V++ RPGPI  D +  
Sbjct: 666  SEDPAVYAMLSRADSIGVFQVESRAQQTMLPRLKPQNFYDLVIEVAIVRPGPIQGDMVHP 725

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+ G E+     P +  +L++T GV ++QEQ M+IA + +G+S   AD LRRAM   
Sbjct: 726  YLRRRQGLEEARFPSPELKGILEKTLGVPLFQEQCMRIAIVAAGFSAGRADELRRAMATF 785

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    +   K+ FI G       +  A   F  +  F  YGF +SHAA++A++ Y +AWM
Sbjct: 786  KKVGTIGTFKDEFIGGMLARNYPRDFAERCFSQIQGFGTYGFPESHAASFALLVYCSAWM 845

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNR 834
            K HYP  F AA +  +        +  +DAR+  +++    VN    D  +       + 
Sbjct: 846  KCHYPDVFAAAILNSQPMGFYAPAQLVRDAREHGVEVRAADVNASEWDHTLEATDGERHA 905

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +      + G+    AR+I+EA  A   F S ED   R                 G    
Sbjct: 906  LRLGFRLVAGMRVEDARNIVEARAAAGAFRSTEDVMRR--------------AKLGTAAM 951

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRF 952
               +R     S+   ++   W           +FAHE   +    +         +    
Sbjct: 952  LTLARADAFGSVARGRRETLWDVAGLEADKLPLFAHETAPSVPPGVPAVALPPLGAGEAV 1011

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +  V G     HP+   +  L+   +    +      G  + +A +V+ +Q+  T KG
Sbjct: 1012 AEDYSVFGLSLRNHPMAFMRAELQAQRMVRAVDLKTLPNGRFVTIAGLVLFRQRPGTAKG 1071

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
            +   ++T  +         +P
Sbjct: 1072 T--IFMTIEDETGAANLIIWP 1090



 Score =  117 bits (293), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 15/123 (12%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            P +  LQ  +++S LEGA   + ++ + A     AIAITD N+L   +     A   G+
Sbjct: 7   PPRYAELQAATNFSFLEGASHPHELVARAAELGLSAIAITDRNSLAGVVRAHLAAREHGV 66

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           + +IGC+L                     P ++   +    Y RL  L++        K 
Sbjct: 67  KLVIGCRLSF---------------VDGAPDLLCYPTDRAAYGRLCRLLTLGKSDRVIKC 111

Query: 128 SVR 130
             R
Sbjct: 112 EAR 114


>gi|15902839|ref|NP_358389.1| DNA polymerase III DnaE [Streptococcus pneumoniae R6]
 gi|15458393|gb|AAK99599.1| DNA-polymerase III alpha-chain [Streptococcus pneumoniae R6]
          Length = 1042

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/1034 (29%), Positives = 496/1034 (47%), Gaps = 103/1034 (9%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            + +  EK      L   + YS +E  +S+   +          +A+ D +NL+ A +F +
Sbjct: 1    MRRIEEKCKLIAQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLE 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
                 GI P++G ++ + + D                ++  L  ++ GYQ+L++L +   
Sbjct: 61   ITKKYGIHPLLGLEMTVFVDD-------------QEVNLRFLALSSVGYQQLMKLSTA-- 105

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
               QG+++  +   +L++I    +I+                               F  
Sbjct: 106  -KMQGEKTWSVLSQYLEDIA---VIV-----------------------------PYFDR 132

Query: 181  RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
               + L    G D Y       LA     P++           D E   VL A+  +  +
Sbjct: 133  VESLEL----GCDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPL 188

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +   P  +      + S +  +F +  P+AL+N  ++    S+ L      LPRF    
Sbjct: 189  REV--PLRSRQDVFISASSLEKLFQECFPQALDNLEKLISGISYDLDTSL-KLPRFNP-- 243

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                           AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+
Sbjct: 244  ------------ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLV 291

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++ + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD D
Sbjct: 292  VWDLLRFGRSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDID 351

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID     R + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I
Sbjct: 352  IDIPDIYRPDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKI 411

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                       A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L
Sbjct: 412  SFRDNLK---SAYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDL 468

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
            +  +P+      ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +
Sbjct: 469  TNYIPL--KYGDEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKI 526

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I  +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I
Sbjct: 527  EEIDLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYI 586

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMG
Sbjct: 587  NNFVARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMG 646

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK    M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+
Sbjct: 647  KKDASAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAY 706

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
             KTHYP  F    +     +      +  DA +   ++   S+NT     K+ +  IY  
Sbjct: 707  FKTHYPAIFYQVMLNSSNSD------YLIDALEAGFEVASLSINTIPYHDKIANKAIYLG 760

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L +IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R
Sbjct: 761  LKSIKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNR 817

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             ++  +L N+ ++ +        +  ++F     ++ +              +F  EQ +
Sbjct: 818  QKVFNNLANLFEFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQEL 863

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG   S HPL      +    I            +   +   V   +  +T+KG  + ++
Sbjct: 864  LGIGVSKHPLQ----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFL 919

Query: 1019 TFSEPAKEYEANFF 1032
               +  K+ +   F
Sbjct: 920  QADDSKKKLDVTLF 933


>gi|320011646|gb|ADW06496.1| DNA polymerase III, alpha subunit [Streptomyces flavogriseus ATCC
            33331]
          Length = 1161

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1071 (25%), Positives = 464/1071 (43%), Gaps = 76/1071 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL   S +SL  GA     + ++ A     A+A+TD ++L  A+ F++     G++P
Sbjct: 3    GFTHLHTVSGFSLRYGASHPERLAERAAGRGMDALALTDRDSLSGAVRFARACEKEGVRP 62

Query: 70   IIGCQLDIDMQ-------DNLKMTNQGKT-PFPTVPSIVLLVST-AEGYQRLIELVSRMY 120
            I G +L +  Q          +   +G      + P +  L    A G+  L  LV+  +
Sbjct: 63   IFGTELAVAPQVTEGAPAHRPRTPARGGAFVDESAPRVTFLARDGARGWAELCRLVTAAH 122

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 + + R  L+    +  EGL +L G  +  +  A        A   L+ +++++GD
Sbjct: 123  SGAADRGAGR-PLAGRDALPAEGLTVLLGP-ASEVGAALAAGRPDRAAALLVPWREIYGD 180

Query: 181  RLYVNLQRHR----GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             L +    H     G    R  ++ V  A    +  V TN   +         DVL +  
Sbjct: 181  ALRLEAVHHGREGTGPGSLRLAARTVGFAAEQGVRAVLTNAVRYADPGQGPVADVLDSAR 240

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARRCSFI 284
                V  +  P  + + +LK+ + M      +  A           L  T   A  C   
Sbjct: 241  RLVPVDPRRTPLDSGERWLKDDAAMRGTAERIASAAGLGRGAGERLLAETRHTADACRVD 300

Query: 285  LQVHAPILP-RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLD 342
                  +    F E      +       R  A   L  R A G +  GY   +DY +R+ 
Sbjct: 301  PARDLGLGSVHFPEPRLVGAE-------RRTAQRVLATRAAAGMVRHGYDRRRDYWERMH 353

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             EL++IA   F+ YFL V+  +   K   I V   RGSGAGS+  + L I   DP+   L
Sbjct: 354  RELDIIAHHGFATYFLTVSQVVDDVKGMGIRVA-ARGSGAGSLVNHLLGIAHADPIEHGL 412

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            L ERFL+  R  +PD  ID    RR EV R + +++G ERVA +    + + + A+RDVG
Sbjct: 413  LMERFLSKRRFVLPD--IDVESARRLEVYRAIIDRFGTERVAAVSMPETYRVRHAIRDVG 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             AL M  ++ DRL K  P+  A      A+ +    R    +     RL ++ + L+ L 
Sbjct: 471  AALSMDPAETDRLAKAFPHIRARDARA-AMEELPELRAVAGSKEKYGRLWDLVESLDALP 529

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYR----------DVRSDLPVTQFNMKWIEKAGLIKFD 572
            R  + H  G+++ D  L +  P+               S +P++QF+   +E  GL+K D
Sbjct: 530  RGIAMHPCGVLLSDDSLLRRTPVVPTSGEIPSLDGGGGSPIPMSQFDKDDVEHLGLLKLD 589

Query: 573  FLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
             LG++  + +  ++ +     G ++DL  +P  D ETY L+    TLG FQ+ES G R  
Sbjct: 590  VLGVRMQSAMAHAVTELKRASGQELDLDAVPQGDPETYRLIRDAETLGCFQIESPGQRDL 649

Query: 632  LEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
            +  +QP    D++  +SL+RPGP+  D +  +   ++G+  +   HP ++  L++T GV+
Sbjct: 650  VGRLQPATFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRYPHPDLEGALRDTYGVV 709

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            ++ EQ++++  +++G    EAD +RR +     E   + +  F   A++      + V  
Sbjct: 710  VFHEQIIEMVNIMTGCGRGEADRVRRGLS--DPESQARIRVWFARRAAQRKYDAQVIVRA 767

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DA
Sbjct: 768  WEIIEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADA 826

Query: 810  RQFNIQIMPPSVNTPCVDFKV--------GDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
            R+  + ++P  VN      ++            +  +L+ + G+       I    + +P
Sbjct: 827  RRRGVPVLPLDVNRSAAAHRIELVSGGKGEKWGLRLALSDVHGISEAEVARI---ESGQP 883

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + SL DF  R    +  +   E L   GALD FG +R  LL  L  + +  +        
Sbjct: 884  YSSLLDFWQRA---RPGKPAAERLAQVGALDSFGANRRDLLLHLSELHRAQRRSGSGAAG 940

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                +     G  +  + L      N + R   E  VL    S H +  +   L ++G  
Sbjct: 941  AQLPLGG---GHRTGSVGLPDL---NDAERLSAELGVLSLDVSRHLMGDHHGFLEELGAV 994

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +       G  + +A   V+ Q    R G R+ + T  +     +  FF
Sbjct: 995  SAKRLREARHGETVLVAGAKVATQTPPVRSGRRVIFTTLDDGTGLVDLAFF 1045


>gi|303254600|ref|ZP_07340703.1| DNA polymerase III DnaE [Streptococcus pneumoniae BS455]
 gi|303259799|ref|ZP_07345774.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP-BS293]
 gi|303264635|ref|ZP_07350553.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae BS397]
 gi|303267465|ref|ZP_07353317.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae BS457]
 gi|301801743|emb|CBW34452.1| DNA polymerase III alpha subunit [Streptococcus pneumoniae INV200]
 gi|302598452|gb|EFL65495.1| DNA polymerase III DnaE [Streptococcus pneumoniae BS455]
 gi|302639004|gb|EFL69464.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP-BS293]
 gi|302642998|gb|EFL73293.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae BS457]
 gi|302645722|gb|EFL75951.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae BS397]
          Length = 1033

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1023 (29%), Positives = 492/1023 (48%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +      QG+++  +
Sbjct: 63   GLEMTVFVDD-------------QEVNLRFLSLSSVGYQQLMKLSTA---KMQGEKTWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++I    +I+                               F     + L    G
Sbjct: 107  LSQYLEDIA---VIV-----------------------------PYFDRVESLEL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++           D E   VL A+  +  + +   P  +  
Sbjct: 131  CDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSRQ 188

Query: 252  HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F    P+AL+N  ++    S+ L      LPRF               
Sbjct: 189  DVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  ALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  ASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    
Sbjct: 709  IMLNSANSD------YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  ALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ +        +  ++F     ++ +              +F  EQ +LG   S HPL 
Sbjct: 820  EFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|222153151|ref|YP_002562328.1| DNA polymerase III DnaE [Streptococcus uberis 0140J]
 gi|222113964|emb|CAR42236.1| DNA polymerase III alpha subunit [Streptococcus uberis 0140J]
          Length = 1034

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/1027 (28%), Positives = 497/1027 (48%), Gaps = 106/1027 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L   + YS ++  + L +   K       +I I D +NL++A  F +     G+Q I
Sbjct: 2    FVQLDTKTVYSFMDSLIDLESYFSKAKELGYSSIGIMDKDNLYAAYHFIKGCERHGLQAI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++D  + D                 I L+     GYQ L++L +++   +  +   R
Sbjct: 62   LGLEIDYHISDQF-------------IPIFLIAKNNLGYQNLLKLSTQIMSSENVQ---R 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                +L      GL          +   +F +  ++A          F    Y+ +    
Sbjct: 106  HFKEYLD-----GL---------EVIIPYFKHMEEIA----------FPFEYYIGVYEDT 141

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                       +  ++H+  L+      +  +ED +   VL A+  +  +++     V  
Sbjct: 142  -----------EFPHSHK-KLIPLRTVRYFEDEDRQTLQVLHAIRDNVSLNET--AIVEG 187

Query: 251  DHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D   ++  ++ +IF    P ++E   ++     +    +   LPRF      + +   + 
Sbjct: 188  DQKFEDSQKISTIFETRFPGSIERLNKLVSGIHYQFD-NQFKLPRF------NREVPAKE 240

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            +L      GLE R        G    +Y  RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 241  QLYALTKEGLEKR--------GLWQDNYISRLHHELTIISEMGFEDYFLIVWDLLRFGRS 292

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ A+AL IT IDP++ +LLFERFLN +R SMPD DID     R E
Sbjct: 293  KGYYMGMGRGSAAGSLVAFALEITGIDPVKNNLLFERFLNNERFSMPDIDIDLPDIYRME 352

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG    AQI+TF +   K ALRDV +   +P  ++  L K I        SL
Sbjct: 353  FLRYVRNRYGTNHSAQIVTFSTFGPKQALRDVLKRFGVPEYEISHLTKKI----GFKDSL 408

Query: 490  QAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             ++ D++  FR+   +     +  +I++++EG  R  S HAAGIV+ D  L+  +P+ + 
Sbjct: 409  HSVYDNNISFRQTIASRLEYQKAFDIAKRIEGNPRQTSIHAAGIVMSDSNLTDFIPLKQ- 467

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
               ++ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+     + +  I  +D +
Sbjct: 468  -GDEMMITQYDAPSVEANGLLKMDFLGLRNLTFVQKMKEKVAKDFGKNIIIEEIDLEDPK 526

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T GIFQ E SG    L+ ++P   E+I+A  SL RPG  D    +  R+NG
Sbjct: 527  TLELFAKGDTKGIFQFEQSGAISLLKRIKPVKFEEIVATTSLNRPGASDYTSNFIKRRNG 586

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KE I  I P+I P+L+ T G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK   EM K
Sbjct: 587  KETIDLIDPIIAPILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKKISEMKK 646

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +  F+ GA   G S+  A  +F  + KFA YGFN+SHA AY+ +++Q A+ K HYP  F
Sbjct: 647  LESEFLEGARALGRSEETAKLLFNRMEKFAGYGFNRSHAYAYSALAFQLAYFKVHYPSVF 706

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
                M     +      +  DA      ++P S+N+   + KV    I   +  IK +  
Sbjct: 707  FDVIMNYSTSD------YISDALDSEFNVVPLSINSIPFNDKVEGRTILMGMKNIKHLPR 760

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A  I+EA    PF S+E+F +++  K   + +LE+L+  G  D F  +R ++LQ+ + 
Sbjct: 761  DLAYWIIEAR---PFTSIENFLTQLPDKYQKKEILEALISVGLFDVFEKNRKKVLQNYEG 817

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  + +        +  ++FA     ++      +    +SS ++  E+  +G   S HP
Sbjct: 818  LLVFVK--------ELGSLFADSSFNWT------ECEDFSSSEKYRMEEEYIGIGLSQHP 863

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKE 1026
            L      + +   + +       +  ++ L   +   +  +T+  G ++ ++T ++  K+
Sbjct: 864  LL----EIAEKTSRDFTPISKLYKDTDVTLLVQIEKVRVIRTKSNGQQMAFLTVTDTKKK 919

Query: 1027 YEANFFP 1033
             +   FP
Sbjct: 920  CDVTVFP 926


>gi|315222678|ref|ZP_07864567.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
 gi|315188364|gb|EFU22090.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
          Length = 1033

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/1024 (27%), Positives = 489/1024 (47%), Gaps = 103/1024 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + Y+ ++  +S+   ++         + I D +NL+    F + A   GIQP++
Sbjct: 3    AQLDTKTVYTFMDSLISIKKYVETAKNLGYQTLGIMDIDNLYGVYHFMETAIEQGIQPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +D                   ++  L   ++GY+ L++L +   +     +  + 
Sbjct: 63   GVEMTLDYA-------------GLPLNLRFLALDSQGYRNLMKLSTLKMIRKSKWEEFQH 109

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             L         G+ ++     G                  L   +      Y+ +     
Sbjct: 110  LLE--------GIAVIVPVFEGI---------------EALDLGR----EFYIGVFPDTP 142

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
               +  + +                  +    D E   +L A+  ++ + +     +   
Sbjct: 143  KQAFPHATL------------PLQTVRYFDTGDLETLQMLCAIRENSSLREVG--NLPNH 188

Query: 252  HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             YL +  +    F +  PE+L+N  ++     + +      LPRF  +            
Sbjct: 189  DYLLSPEQFTQSFQENYPESLDNLKQLVAGIHYEINTEL-KLPRFNPE------------ 235

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                A+  L+ R   G   K  ++  Y++RL  EL+VI +M F  YFLIV D +++ +  
Sbjct: 236  --RPAIEELQERAEAGLEKKRLNSLVYKERLQQELSVIHQMGFDDYFLIVWDLLRFGRSQ 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ AYAL IT IDP+  +LLFERFLN +R +MPD DID     R E 
Sbjct: 294  GYYMGMGRGSAVGSLVAYALEITGIDPVEKNLLFERFLNVERYTMPDIDIDIPDVYRPEF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + + I           
Sbjct: 354  IRYVRDRYGTMHAAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITRKISFRDNLT---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   +  FR+   +     +  EI++++EG  R  S HAAG+V+ D  L+  +P+     
Sbjct: 411  AYEKNMSFRQIINSKLEYQKAFEIAKRIEGNPRQTSIHAAGVVMSDNDLTDHIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETY 609
             D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L + GV +D++ I  +D  T 
Sbjct: 469  EDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEAALEKYGVAIDIAKINLEDTATL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L +   T GIFQ E +G    L+ +QP   E+++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  QLFSAGRTKGIFQFEQAGAINLLKRVQPTQFEEVVATTSLNRPGASDYIDNFVRRKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +   ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM K +
Sbjct: 589  KVEILDSSLEDILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNVVEMHKME 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F++GA + G S+T A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F  
Sbjct: 649  AEFVTGALELGHSETKAKEVFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDIFFD 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +F+ Q+   ++N      K  D +IY  L  IKG+    
Sbjct: 709  IMLNYSSSD------YITDALEFDFQVASLNINNIPYRDKFQDKQIYLGLKNIKGLPRDV 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E   ++PF ++EDF  ++ ++    +++  LV  G  D F  +R ++LQ+L N+ 
Sbjct: 763  AYWIIE---NRPFTNVEDFILKLPTQYHKVQLITPLVQVGLFDVFEKNRQKILQNLPNLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +A        ++  ++FA    ++++            + +FE E+ ++G   S HPL 
Sbjct: 820  VFA--------DELGSLFADTNYSWTEA------EDYTEAEKFELEKEIIGIGLSEHPL- 864

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 L K   + +      +  N+  +   ++S +  +T+ G  + ++  S+  ++ E 
Sbjct: 865  ---VKLAKSATQAFTPIQDLVENNHATILVEILSIRVIRTKTGENMAFLQVSDAKRKMEV 921

Query: 1030 NFFP 1033
              FP
Sbjct: 922  TVFP 925


>gi|194397529|ref|YP_002037532.1| DNA polymerase III DnaE [Streptococcus pneumoniae G54]
 gi|194357196|gb|ACF55644.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae G54]
          Length = 1033

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1023 (29%), Positives = 489/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +      QG+++  +
Sbjct: 63   GLEMTVFVDD-------------QEVNLRFLALSSVGYQQLMKLSTA---KMQGEKTWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++I    +I+                               F     + L    G
Sbjct: 107  LSQYLEDIA---VIV-----------------------------PYFDRVESLEL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++           D E   VL A+  +  + +   P  +  
Sbjct: 131  CDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSRQ 188

Query: 252  HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F    P+AL+N  ++    S+ L      LPRF               
Sbjct: 189  DVFISASFLEKLFQERFPQALDNLEKLISGISYDLDTSL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  ALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  ASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    
Sbjct: 709  IMLNSANSD------YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E     P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  ALWIIEHR---PYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ +        +  ++F     ++ +              +F  EQ +LG   S HPL 
Sbjct: 820  EFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|182683841|ref|YP_001835588.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|182629175|gb|ACB90123.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
          Length = 1042

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/1034 (29%), Positives = 496/1034 (47%), Gaps = 103/1034 (9%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            + +  EK      L   + YS +E  +S+   +          +A+ D +NL+ A +F +
Sbjct: 1    MRRIEEKCKLIAQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLE 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
                 GI P++G ++ + + D                ++  L  ++ GYQ+L++L +   
Sbjct: 61   ITKKYGIHPLLGLEMTVFVDD-------------QEVNLRFLSLSSVGYQQLMKLSTA-- 105

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
               QG+++  +   +L++I    +I+                               F  
Sbjct: 106  -KMQGEKTWSVLSQYLEDIA---VIV-----------------------------PYFDR 132

Query: 181  RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
               + L    G D Y       LA     P++           D E   VL A+  +  +
Sbjct: 133  VESLEL----GCDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPL 188

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +   P  +      + S +  +F    P+AL+N  ++    S+ L      LPRF    
Sbjct: 189  REV--PLRSRQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSL-KLPRFNP-- 243

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                           AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+
Sbjct: 244  ------------ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLV 291

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++ + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD D
Sbjct: 292  VWDLLRFGRSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDID 351

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID     R + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I
Sbjct: 352  IDIPDIYRPDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKI 411

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                       A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L
Sbjct: 412  SFRDNLK---SAYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDL 468

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
            +  +P+      ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +
Sbjct: 469  TNYIPL--KYGDEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKI 526

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I  +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I
Sbjct: 527  EEIDLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYI 586

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMG
Sbjct: 587  NNFVARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMG 646

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK    M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+
Sbjct: 647  KKDASAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAY 706

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
             KTHYP  F    +     +      +  DA +   ++ P S+NT     K+ +  IY  
Sbjct: 707  FKTHYPAIFYQIMLNSANSD------YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLG 760

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L +IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R
Sbjct: 761  LKSIKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNR 817

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             ++  +L N+ ++ +        +  ++F     ++ +              +F  EQ +
Sbjct: 818  QKVFNNLANLFEFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQEL 863

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG   S HPL      +    I            +   +   V   +  +T+KG  + ++
Sbjct: 864  LGIGVSKHPLQ----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFL 919

Query: 1019 TFSEPAKEYEANFF 1032
               +  K+ +   F
Sbjct: 920  QADDSKKKLDVTLF 933


>gi|332171749|gb|AEE21003.1| DNA polymerase III, alpha subunit [Glaciecola agarilytica
            4H-3-7+YE-5]
          Length = 1030

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/1040 (24%), Positives = 457/1040 (43%), Gaps = 89/1040 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L   S++S L+ A   + ++ +       A+AITD  ++   +    +  +  ++ 
Sbjct: 7    RYAELFCQSNFSFLQAASHPSELIYQADYLGYQALAITDECSVAGIVRAYSEIKSKDLK- 65

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
                         +K+       F    ++VLL      Y  L  +++      + K   
Sbjct: 66   -------------VKLIVGSLLHFNAELTLVLLCPNHRAYSELCRIITNARRRAE-KGKY 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            ++ L  L+       I L                    +       K +  RL++  QRH
Sbjct: 112  QLDLWDLKTTKHCLAIWLP------------SGDLASDKHWAKWLNKNYPARLWLGYQRH 159

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247
               D +  ++    L+    +P+ A    L  S E YE   VL ++   + +    ++  
Sbjct: 160  LLSDEHLYQAHCETLSEEFSIPITACGGVLMHSPERYELLCVLNSIHKVNNIEHSVEKIP 219

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               +  L+  S++  ++    + L  +  IA  C+F L   +   P  +  +        
Sbjct: 220  QNAERSLRPISKLKRLYP--AKWLAESASIANLCTFDLSELSYQYPAELIPKG----ATP 273

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR+    G+ +R  +GA      +   R+ +  EL +I  +K+  +FL ++D +Q+A
Sbjct: 274  TSHLRDLVKRGMSIRFPEGA------SFAIRRIIAKELKLIEALKYEFFFLTISDIVQYA 327

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K  +I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +RR
Sbjct: 328  KAQHILY-QGRGSAANSVVCYCLEITAVDPRQISVLFERFISKERNEPPDIDVDFEHERR 386

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  SQ+D   K I        
Sbjct: 387  EEVIQYIYKKYGRERTAIAATVISYRQKSAIRDVGKALGIHESQLDFFIKNINRRD---- 442

Query: 488  SLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              +A+   ++  E  L  +       + +  +++G  RH S H  G VI   PL QLVP+
Sbjct: 443  --KALNWQAQISELGLNPSSGKGKHFIHLVNEIKGFPRHLSQHVGGFVISANPLYQLVPI 500

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----DLSLI 601
                 ++  V Q++   +E  GL+K D L L  LT ++K+ D + Q   K     D++ +
Sbjct: 501  ENASMAERSVIQWDKDDLESLGLLKVDVLALGMLTAIRKTFDLIKQHHNKTISIADITRL 560

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
            P  D + Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI  D + 
Sbjct: 561  PS-DPDVYAMIQKADTVGVFQIESRAQMTMLPRLRPKCFYDLVIQIAIVRPGPIQGDMVH 619

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R++G E +      ++ +L  T GV I+QEQV++IA + +G+S  EAD LRRAM  
Sbjct: 620  PFLKRRDGLEPVEYPSKEVESVLSRTMGVPIFQEQVIKIAMVAAGFSGGEADQLRRAMAS 679

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K   E+ K K++ I G    G     A  +++ +  F +YGF +SH+A+++V++Y ++W
Sbjct: 680  WKKTGELIKFKDKLIKGMLARGYKVQFAEQLYKQICGFGEYGFPESHSASFSVLAYVSSW 739

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----R 834
            +K +YP  F    +           +  QDA++ +I+++P  +N    D  +        
Sbjct: 740  LKYYYPESFYCGLLNSWPMGFYTPDQLIQDAKRHHIEVLPVCINASYYDHIIETADNQLA 799

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +      IKG+        +++  ++ +  L    +++    L +  LE+L  A A    
Sbjct: 800  LRLGFRLIKGLSRREIEEFVDSRPNQGYSEL----AQLKESGLTKASLEALASANAFSSL 855

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R     SL               +   ++   ++ T  +    E+ S  ++      
Sbjct: 856  SDNRYTAKWSL--------------MDSQSDLPLFKQLTMDNDFNPEQPSEFSA---LLE 898

Query: 955  EQRVLGFYFSGHPLDVYKP--ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + R  G     HP+ +     +L         +       + I++  +V  +Q   T  G
Sbjct: 899  DYRTTGMSLHSHPIRLLSEANLLGHY--TPAAQLDTITHKSVIKVVGLVKGRQSPGTASG 956

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
              + ++T  +         +
Sbjct: 957  --VTFITLEDHTGNSNVIVW 974


>gi|282852082|ref|ZP_06261440.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 224-1]
 gi|282556842|gb|EFB62446.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 224-1]
          Length = 899

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/855 (34%), Positives = 460/855 (53%), Gaps = 31/855 (3%)

Query: 182  LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            +Y+ +   +G   Y    +  LA   EL L A  +  +L+  +      L A+  +T + 
Sbjct: 27   VYLGVYADQGQQEYIN-YLRSLATQFELSLAAVEDGQYLNRNEQFLRRTLQAIKSNTHLE 85

Query: 242  QKDR-PRVTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
              ++  +    HYLK   E+   +   ++ +ALEN  +I + C+  +    P LP+F + 
Sbjct: 86   NVEQLAKQAGSHYLKTSEELQVNYRKFEIEDALENAEKIGQLCNAKITFQDPQLPKFKQN 145

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +        +  L + A  GL  R       KG   + Y++RLD+EL VI  M F  YFL
Sbjct: 146  KFP----TSKEYLHSLAQNGLAKRF------KGQIPERYQKRLDYELKVINEMGFDDYFL 195

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV D + +A   +I  GPGRGS AGS+ +YAL IT++DPL ++LLFERFLNP R  MPD 
Sbjct: 196  IVWDVMNFAHSVHITTGPGRGSAAGSLVSYALRITEVDPLEYNLLFERFLNPARQQMPDI 255

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+D   +RRDEVI+Y+  KYG    AQI+TFG+L AK  L+DV R   +   +  R    
Sbjct: 256  DLDIPDNRRDEVIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDA 315

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP+        +A       +     +     L   ++ LE L RH S HAAG+VI D  
Sbjct: 316  IPHAKGKITLAEAYQKSKELQLLVNTNTFSKILFATAEHLENLPRHYSIHAAGLVITDDS 375

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            L+++V +       +PVTQ     +E  GL+K DFLGL+ LT+L   +  L   GV++D 
Sbjct: 376  LAEIVGLQAGPL-GIPVTQQTKLNVESLGLLKIDFLGLRNLTILGNIIAALKSEGVEIDP 434

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D ET  L     T  +FQ ES G+++ LE + PD  EDI+A+ +LYRPGP++NI
Sbjct: 435  NQIPLNDQETLALFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPMNNI 494

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + NRK+GKE++    P +  +L  T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM 
Sbjct: 495  GHFINRKHGKERVQYPDPSLKKILGPTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMS 554

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  + + K++E+FI GA K G  K +A  +++ +A+FA+YGFN+SHA AY+ I++  A+
Sbjct: 555  KKNADVIQKEREKFIQGAVKLGRRKEVAEQVYDYIAQFANYGFNRSHAVAYSKIAFWLAY 614

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
             K HYP  F  + +   + N  KI ++   A++  I+ +PP +     DF + + +I   
Sbjct: 615  FKVHYPGAFYLSLLNSNIGNRNKIAQYLMQAQEAGIKTLPPDIENSQADFSLENGKILVG 674

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L AI+G+ +   + I+E    +P  S+ DF  ++D+  L+   + +L+ AGA D    +R
Sbjct: 675  LKAIRGLRSDLLKQILEI--KRPIKSMTDFLWKIDNNLLSADAIANLIKAGAFDRLAPNR 732

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             +LL+   ++ +  +    N      ++F     T   KI  EK     ++ +   E   
Sbjct: 733  NELLKINKDLVESVKMAGSN-----LSLF----ETLEPKIEEEKMP--TAAEKSAMEVEA 781

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +GF    +P+   +   RK   K  +   +  +G  +     ++  +Q  T+KG  + + 
Sbjct: 782  MGFSTGINPIIAVQKYARKYNAKRLQAFESNEQGIAV---GKLMRIKQITTKKGDNMAFA 838

Query: 1019 TFSEPAKEYEANFFP 1033
             FS+ + + +   FP
Sbjct: 839  VFSDSSGDKDFTIFP 853


>gi|225854402|ref|YP_002735914.1| DNA polymerase III DnaE [Streptococcus pneumoniae JJA]
 gi|225723770|gb|ACO19623.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae JJA]
          Length = 1033

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/1024 (28%), Positives = 489/1024 (47%), Gaps = 105/1024 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +      QG+++  +
Sbjct: 63   GLEMTVFVDD-------------QEVNLRFLALSSVGYQQLMKLSTA---KMQGEKTWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-VNLQRHR 190
               +L++I    +I+                               + DR+  + L    
Sbjct: 107  LSQYLEDIA---VIV------------------------------SYFDRVESLEL---- 129

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D Y       LA     P++           D E   VL A+  +  + +   P  + 
Sbjct: 130  GCDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSR 187

Query: 251  DHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                 + S +  +F    P+AL+N  ++    S+ L      LPRF              
Sbjct: 188  QDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSL-KLPRFNP------------ 234

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
                 AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + 
Sbjct: 235  --ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRS 292

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R +
Sbjct: 293  NGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPD 352

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I          
Sbjct: 353  FIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK--- 409

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+    
Sbjct: 410  SAYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KY 467

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D ET
Sbjct: 468  GDEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKET 527

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+
Sbjct: 528  LALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQ 587

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++  +   ++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + 
Sbjct: 588  EEVTVLDSALEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEM 647

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F 
Sbjct: 648  RASFIQGSIEAGHTAEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFY 707

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA +   ++   S+NT     K+ +  IY  L +IKG+   
Sbjct: 708  QVMLNYSNSD------YLIDALEAGFEVASLSINTIPYHDKIANKSIYIGLKSIKGLSKD 761

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E     P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+
Sbjct: 762  LALWIIEHR---PYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANL 818

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             ++ +        +  ++F     ++ +              +F  EQ +LG   S HPL
Sbjct: 819  FEFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPL 864

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                  +    I            +   +   V   +  +T+KG  + ++   +  K+ +
Sbjct: 865  Q----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLD 920

Query: 1029 ANFF 1032
               F
Sbjct: 921  VTLF 924


>gi|46200108|ref|YP_005775.1| DNA polymerase III alpha subunit [Thermus thermophilus HB27]
 gi|46197736|gb|AAS82148.1| DNA polymerase III alpha subunit [Thermus thermophilus HB27]
          Length = 2067

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/777 (38%), Positives = 425/777 (54%), Gaps = 72/777 (9%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAAD--QQPAIAITDTNNLFSALEFSQKA 62
           + +   F HL  H+ +SLL+GA  L+++L  +     + PA+A+TD  NLF A+EF +KA
Sbjct: 1   MGRKLRFAHLHQHTQFSLLDGAAKLSDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKA 60

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              GI+PI+G +  +  +       +GK        + LL     GYQ L+ L SR YL 
Sbjct: 61  TEMGIKPILGYEAYVAAESRFDR-KRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYLE 119

Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
               +  RI    L+E   EGLI L+G     I +    +   +AE RL  +  +F DR 
Sbjct: 120 G-FYEKPRIDREILRE-HAEGLIALSGCLGAEIPQFILQDRLDLAEARLNEYLSIFKDRF 177

Query: 183 YVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           ++ +Q H   ++ + ++V+ + A  + L +VATN+  ++ +ED  AH+VL+A+   + + 
Sbjct: 178 FIEIQNHGLPEQKKVNEVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKSTLD 237

Query: 242 QKDRPRVTPDHYL-KNRSEMVSIFSDLP---EALENTVEIARRCSFILQVHA---PILPR 294
              R R   D +  K   EM ++F +     E  +NTVEIAR C+  L +       +PR
Sbjct: 238 DPGRWRFPCDEFYVKTPEEMRAMFPEEEWGDEPFDNTVEIARMCNVELPIGDKMVYRIPR 297

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA------------------------- 329
           F   E     + E   L      GL  R                                
Sbjct: 298 FPLPEG----RTEAQYLMELTFKGLLRRYPDRITEGFYREVFRLLGKLPPHGDGEALAEA 353

Query: 330 ----------------------KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
                                 K + A+    R  +EL+VI RM F GYFLIV D+I WA
Sbjct: 354 LAQVEREAWERLMKSLPPLAGVKEWTAEAIFHRALYELSVIERMGFPGYFLIVQDYINWA 413

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           ++N + VGPGRGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF    R
Sbjct: 414 RRNGVSVGPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRER 473

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           D VI+YV+ +YG ++VAQI T GSL +KAAL+DV R   +P+ + + L KLIP     P 
Sbjct: 474 DRVIQYVRERYGEDKVAQIGTLGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPK 533

Query: 488 SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            LQ AI      R     DP V  +LE++ +LEGL RHAS HAAG+VI   PL+ LVP+ 
Sbjct: 534 PLQEAIQVVPELRAEMEKDPKVREVLEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLM 593

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
           RD +   PVTQ++M  +E  GL+K DFLGL+TLT L +    +     V++D   +P DD
Sbjct: 594 RD-QEGRPVTQYDMGAVEALGLLKMDFLGLRTLTFLDEVKRIVKASQGVELDYDALPLDD 652

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
            +T+ LL+   T G+FQLES GM   L G++P   ED+IA++SLYRPGP+++I  Y  R 
Sbjct: 653 PKTFALLSRGETKGVFQLESGGMTATLRGLKPRRFEDLIAILSLYRPGPMEHIPTYIRRH 712

Query: 666 NGKEKIVS---IHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           +G E +      H    + P+L ET G+ +YQEQ+MQIA  ++GYSL EAD+LRR +
Sbjct: 713 HGLEPVSYSEFPHAEKYLKPILDETYGIPVYQEQIMQIASAVAGYSLGEADLLRRCL 769



 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 99/277 (35%), Positives = 149/277 (53%), Gaps = 12/277 (4%)

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
             + SHAAAY+++SYQTA++K HYPVEF+AA +++E  + +K+ ++ +DAR   I+++PP 
Sbjct: 1659 VHNSHAAAYSLLSYQTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARAMGIEVLPPD 1718

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNR 879
            VN    DF V   +I + L+A+K VG   A  I+ E     P+ SL DF  R+D K LN+
Sbjct: 1719 VNRSGFDFLVQGRQILFGLSAVKNVGEAAAEAILRERERGGPYRSLGDFLKRLDEKVLNK 1778

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R LE L+ AGALD FG  R +LL SL+ + K+A    +   +    +F+       ++  
Sbjct: 1779 RTLEFLIKAGALDGFGE-RARLLASLEGLLKWAAENREKARSGMMGLFSEV-----EEPP 1832

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NNI 995
            L + +  +   R   E+  LG Y SGHP+  Y P LR+      EE     R     + +
Sbjct: 1833 LAEAAPLDEITRLRYEKEALGIYVSGHPILRY-PGLRETATCTLEELPHLARDLPPRSRV 1891

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             LA MV    +K T+ G  +     S+     EA  F
Sbjct: 1892 LLAGMVEEVVRKPTKSGGMMARFVLSDETGALEAVAF 1928



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%)

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            SE  V+  +MGKK  EEM   +ERF+ GA + G+ +  A  +F++L  FA+YGFNK   A
Sbjct: 1183 SEDLVVHNSMGKKKVEEMKSHRERFVQGAKERGVPEEEANRLFDMLEAFANYGFNKCLPA 1242

Query: 768  AYAVISYQTA 777
               V+ + T 
Sbjct: 1243 RARVVDWCTG 1252


>gi|311739972|ref|ZP_07713806.1| DNA-directed DNA polymerase [Corynebacterium pseudogenitalium ATCC
            33035]
 gi|311305045|gb|EFQ81114.1| DNA-directed DNA polymerase [Corynebacterium pseudogenitalium ATCC
            33035]
          Length = 1039

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/1031 (26%), Positives = 439/1031 (42%), Gaps = 96/1031 (9%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S  F  L   SSYS L+GA     ++ +        +AI D +  +  ++F++ A  AG
Sbjct: 44   SSVPFAELHAVSSYSFLDGAAEPEELVARAVELGLEGLAIVDRDGFYGLMKFAEAAAKAG 103

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +  +                  G         + +L  T EGY+RL  L++R  +    K
Sbjct: 104  LPAVY-----------------GAELSLAEAPVTVLARTPEGYRRLSRLIARARMEAGEK 146

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V      L E+  E          G     FF    +   +     +++  D + +  
Sbjct: 147  DCVAYPP--LDEVARE--------LEGE---CFFLVGPEALAEIDNLLERIKIDSIVLEY 193

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  +   + + +           A   +    +    A    +A   S   +     
Sbjct: 194  SCSMSPEDADQHRFLDKYNNLRAIATARPAAATRDQARLAAAKRALARRESLAAAAPHAH 253

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +    +L++  +M  +  D PE +  TV +AR CSF     AP LP F   E    +  
Sbjct: 254  PMGAG-WLRSGEQMAQLLPDRPELIAETVALARECSFTWDALAPNLPHFPVPE----EHT 308

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E + L ++     + R A          Q  R+++  EL VI ++ F GYFLIV D + +
Sbjct: 309  EMSWLEHEVWRRAKDRYAS---RPAEIRQAARKQIRHELGVIKQLGFPGYFLIVCDLVDF 365

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             ++ NI +  GRGS A S   +AL IT+ +P+   LLFERFL+PDR   PD DID    R
Sbjct: 366  CRRENI-LCQGRGSAANSAVCFALGITNAEPISAQLLFERFLSPDRDGPPDIDIDIESGR 424

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+YV   +G +R AQ+    + + K A RD  RAL  P    D   K     PA  
Sbjct: 425  REEVIQYVYRTHGRDRAAQVANVITYRRKGATRDAARALGYPQGSADAWSKGTSEPPADV 484

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             SL                         +++  G  RH   H+ G+V+ DRP++ +VPM 
Sbjct: 485  SSL-------------------------AEQFLGQPRHLGIHSGGMVLCDRPIADVVPME 519

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                 +  V Q++      AGL+KFD LGL  L  L   +D +      +V L  +   +
Sbjct: 520  WARMENRSVLQWDKDDCAAAGLVKFDLLGLGMLEALHHMIDAVRATTGREVHLWELDLAE 579

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
             E Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI       Y  
Sbjct: 580  PEVYDMLCRADAVGVFQVESRAQLATLPRLKPRRFFDLVVEVALIRPGPIQGGSVHPYLR 639

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R++G E++   H +++  L +T G+ ++QEQ+MQIA   +G+S +EAD LRRAM  K+  
Sbjct: 640  RRDGLEEVAYDHSVLEKSLGKTLGIPLFQEQLMQIAVDAAGFSGAEADDLRRAMGSKRSP 699

Query: 723  EEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            E+M   + RF +G  + NGI   +A  ++  +  FA YGF +SH+ ++A + Y +AW K 
Sbjct: 700  EKMAALRSRFFAGLRETNGIEGEVADKLWAKIVAFAAYGFPESHSQSFASLVYFSAWFKY 759

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLA 840
            HYP EF    +  +       +   QDAR+  ++++P S+N      +  G   I   L 
Sbjct: 760  HYPAEFCVGLLRAQPMGFYSPQSLIQDARRHGVRVLPVSINDSGAQTRATGSAEIRLGLN 819

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             IKG+G + A  +  A+   PF S+ D   R D +      +E+L  AGAL+C G  R Q
Sbjct: 820  LIKGLGESAAERVEAAA---PFTSVSDLSRRADLR---VEQVEALATAGALECLGLDRRQ 873

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             L                   + E +        S           ++      +    G
Sbjct: 874  ALWQAGVA-----------ATEREGMLPGTSALAS-----PHLPGMSAFELMATDVAATG 917

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
               +  P+++ +  L    +    +      G  +R+A ++  +Q+ +T  G    ++  
Sbjct: 918  VTHNQQPMELVRASLA--DVLPASQLPHVPDGTRVRIAGIITHRQRPRTASGLT--FLGV 973

Query: 1021 SEPAKEYEANF 1031
             +         
Sbjct: 974  EDETGLMNVMV 984


>gi|302384060|ref|YP_003819883.1| DNA polymerase III subunit alpha [Brevundimonas subvibrioides ATCC
            15264]
 gi|302194688|gb|ADL02260.1| DNA polymerase III, alpha subunit [Brevundimonas subvibrioides ATCC
            15264]
          Length = 1126

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/1077 (21%), Positives = 423/1077 (39%), Gaps = 92/1077 (8%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---Q 60
             L+ S  +  L   S++S L GA     ++          + + D N +   +      +
Sbjct: 3    RLDLSGGYAELATASNFSFLRGASHPKELVATAILRGHSGLGLADRNTVAGVVRAWSALK 62

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP-----------------------FPTVP 97
                 G+ P    +      +   + +    P                           P
Sbjct: 63   ALREDGLSPPDVMRDGSGPGEVTYVEDPANDPALSEEVKRRAATFKLATGTRLVFNDGTP 122

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             I+    T  G+ RL  L++        K    I L  L     + L+++          
Sbjct: 123  DILAYPETRAGWGRLTRLLTLGNRR-AIKGQCEIGLRDLLATPEDLLLIVMPDR------ 175

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVN-LQRHRGYDRYRESQVVQLAYTHELPLVATNN 216
                         L    +      ++  +    G DR R +++  LA    LPL+A N+
Sbjct: 176  -----RLDRLASVLDQVAEAAPGSTWLGAVMGRGGDDRRRLARLKTLAEQAGLPLLAVND 230

Query: 217  SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
             L+   +  +  DV+  +     +    R      + +LK+ +EM  +F D PEA+  T 
Sbjct: 231  VLYHDVDQRDLQDVVTCIREGVTIEAAGRLLNANAERHLKSPAEMARLFRDAPEAVAQTG 290

Query: 276  EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
                R  F L+      P            E +  L +            G  +K     
Sbjct: 291  AFLSRVGFDLEQLRYQYPEEPVPPG----WEPQAWLEDLTWKHANRCYPDGVPSK----- 341

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
                 L  EL  I +  F+ YFL + D ++ A+   I +  GRGS A S   Y L IT +
Sbjct: 342  -VSDLLTKELAFIQKAAFAPYFLTIYDIVRVARDKGI-LCQGRGSAANSAVCYVLGITSV 399

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            +P+   LLFERFL+ DR   PD D+DF  +RR+E+I+++  ++G  R     T    + K
Sbjct: 400  NPMESDLLFERFLSEDRNEPPDIDVDFEHERREEIIQHIYERHGRHRAGIAATVIRYRPK 459

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
            +A+R+VG+ L +      RL           +S + +            +P + R + ++
Sbjct: 460  SAIREVGKVLGLTEDVTARLAGSQWGSWGSEMSERHVEQ----AGLDATNPMIARAVAMA 515

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
             +L    RH S H  G ++    L ++VP+      D    +++   I++  L+K D L 
Sbjct: 516  MRLLNHPRHLSQHVGGFILTQDRLDEMVPIGNAAMPDRTFIEWDKDDIDELRLMKVDVLA 575

Query: 576  LKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L  LT ++K+ D + +   V  DL+ +P DD   Y +L    ++G+FQ+ES      L  
Sbjct: 576  LGMLTCIRKAFDLMREHSGVDHDLASVPQDDPAVYEMLCQGDSIGVFQVESRAQINMLPR 635

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIV-------SIHPLIDPMLKET 685
            ++P  + D++  V++ RPGPI  D +  Y  R++G E+              +  +L++T
Sbjct: 636  LKPRKLYDLVIQVAIVRPGPIQGDMVHPYLRRRSGLEEPDYSQPGPAYPSDELKVVLEKT 695

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKT 744
             GV ++QEQ M++A + + ++  EA+ LR+AMG  +    +   + R +    + G    
Sbjct: 696  LGVPLFQEQAMKVAMVAAEFTDREANGLRKAMGTFRGDGTLHTYEHRMVGRMIERGYDPA 755

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
             A   F+ +  F  YGF +SHAA++A++ Y ++W+K H+P  F  A +  +        +
Sbjct: 756  FAQRCFDQIKGFGSYGFPESHAASFALLVYISSWIKRHHPAAFACALLNSQPMGFYAPAQ 815

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRI----YYSLAAIKGVGTTTARHIMEASADK 860
              +DA++  ++  P  V     +  +               I G     A  ++ A  D 
Sbjct: 816  IVRDAQEHGVETRPIDVACSGWNNGLEGPADRLALRLGFRQIDGFREDWATALVAAR-DP 874

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
                LE    R        R L     A A       R + L +   +            
Sbjct: 875  AITDLETLARRAGLPGAAIRKL---ADADAFRSMRMDRREALWAARRLPD---------- 921

Query: 921  NKHENIFAHEKGTFSDKITL-EKFSVENSSVRF----ENEQRVLGFYFSGHPLDVYKPIL 975
            +    +FA  +        L  +   +  S+R       + +        HP+ + +P+ 
Sbjct: 922  DDALPLFAAAEARERGARELGVEPDAQLPSMRLGEHVAADYQTFRLSLKAHPMAILRPVF 981

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +    E++A   G+ +R+A +V+ +Q+    KG+ I +VT  +         +
Sbjct: 982  AAERVVTCAETLARRGGSTVRVAGVVLVRQRPG--KGNAI-FVTLEDETGVSNVVLW 1035


>gi|322376497|ref|ZP_08050990.1| DNA polymerase III, alpha subunit [Streptococcus sp. M334]
 gi|321282304|gb|EFX59311.1| DNA polymerase III, alpha subunit [Streptococcus sp. M334]
          Length = 1042

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1034 (28%), Positives = 493/1034 (47%), Gaps = 103/1034 (9%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            + +  EK      L   + YS +E  +S++  +          +A+ D +NL+ A +F +
Sbjct: 1    MRRIEEKCKLIAQLDTKTVYSFMESVISIDKYVRAAKDYGYTHLAMMDIDNLYGAFDFLE 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
                 GI P++G ++ + + +                ++  L  ++ GYQ+L++L +   
Sbjct: 61   ITKKYGIHPLLGLEMTLLVDE-------------QEVNLRFLALSSVGYQQLMKLSTA-- 105

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
               QG+++  +   +L++      I +       I+                        
Sbjct: 106  -KMQGEKTWSVLSQYLED------IAVIVPYFEEIESLNL-------------------- 138

Query: 181  RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                      GYD Y       L      P++           D E   VL A+  +  +
Sbjct: 139  ----------GYDYYIGVYPETLTSEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPL 188

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +   P  +      + S +  +F    P+ALEN  ++    S+ L      LPRF    
Sbjct: 189  REV--PLRSRQDVFISASSLEKLFQERFPQALENLEKLISGISYDLDTSL-KLPRFNP-- 243

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                           AV  L  R   G   KG   ++Y+ RLD EL VI  M F  YFL+
Sbjct: 244  ------------ARPAVEELRERAELGLAQKGLTGKEYQDRLDQELAVIHDMGFDDYFLV 291

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++ + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD D
Sbjct: 292  VWDLLRFGRSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDID 351

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID     R + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I
Sbjct: 352  IDIPDIYRPDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKI 411

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                       A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L
Sbjct: 412  SFRDNLK---SAYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDL 468

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            +  +P+      ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   VK+ +
Sbjct: 469  TNYIPLKH--GDEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGVKIVI 526

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + I  +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I
Sbjct: 527  NEIDLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYI 586

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMG
Sbjct: 587  NNFVARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMG 646

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK    M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+
Sbjct: 647  KKDASAMHEMRASFIQGSLEAGHTAEKAEKVFDVMEKFAGYGFNRSHAYAYSALAFQLAY 706

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
             KTHYP  F    +     +      +  DA +   ++ P S+NT     K+ +  IY  
Sbjct: 707  FKTHYPAIFYQVMLNSSNSD------YLMDALEAGFEVAPLSINTIPYHDKIANKSIYLG 760

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L +IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R
Sbjct: 761  LKSIKGVSKDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNR 817

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             ++  +L N+ ++ +        +  ++F     ++ +              +F  EQ +
Sbjct: 818  QKVFNNLANLFEFVK--------ELGSLFGDTIYSWQES------EDWTGQEKFYMEQEL 863

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG   S HPL      +    I            ++  +   +   +  +T+KG  + ++
Sbjct: 864  LGVGVSKHPLQ----AIASKAIYPITPIGNLSENSHSIILVEIQKIKIIRTKKGENMAFL 919

Query: 1019 TFSEPAKEYEANFF 1032
               +  K+ +   F
Sbjct: 920  QVDDSKKKLDVTLF 933


>gi|289167846|ref|YP_003446115.1| DNA-polymerase III alpha-chain [Streptococcus mitis B6]
 gi|288907413|emb|CBJ22250.1| DNA-polymerase III alpha-chain [Streptococcus mitis B6]
          Length = 1042

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1023 (29%), Positives = 490/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S++  +          +A+ D +NL+ A +F +     GI P++
Sbjct: 12   AQLDTKTVYSFMESVISIDKYVRVAKDYGYTHLAMMDIDNLYGAFDFLEVTKKYGIHPLL 71

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++++ + D                ++  L  ++ GYQ+L++L +      QG++S  +
Sbjct: 72   GLEMNVLVDDKD-------------VNLRFLALSSVGYQQLMKLSTA---KMQGEKSWSV 115

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++I    +I+                               F +   +NL    G
Sbjct: 116  LSQYLEDIA---VIV-----------------------------PYFEELELLNL----G 139

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++          +D E   VL A+  +  + +   P  +  
Sbjct: 140  CDYYIGVYPETLASEFHYPILPLYRVNTFESKDREVLQVLTAIKENLPLREV--PLRSRQ 197

Query: 252  HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F    P+ALEN  ++     + L      LPRF               
Sbjct: 198  DVFISASSLEKLFQERFPQALENLEKLISGIYYDLDTSL-KLPRFNP------------- 243

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G   KG   ++Y+ RLD EL VI  M F  YFL+V D +++ + N
Sbjct: 244  -ARPAVEELRERAELGLAQKGLTGKEYQDRLDQELAVIHDMGFDDYFLVVWDLLRFGRSN 302

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 303  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 362

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 363  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFSVPEYELSAITKKISFRDNLK---S 419

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 420  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTDYIPLKH--G 477

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D++T 
Sbjct: 478  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDNDTL 537

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 538  ALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 597

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  + P ++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +
Sbjct: 598  EVTVLDPALEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMR 657

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 658  ASFIQGSIEAGHTAEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 717

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++ P S+NT     K+ +  IY  L +IKG+    
Sbjct: 718  IMLNSANSD------YLSDALEAGFEVAPLSINTIPYHDKIANKSIYLGLKSIKGLSKDL 771

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E     P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 772  ALWIIEHR---PYSNIEDFLAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLF 828

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ + +         ++F     ++ D              +F  EQ +LG   S HPL 
Sbjct: 829  EFVKVL--------GSLFGETIYSWLDS------EDWTEQEKFYMEQELLGVGVSKHPLQ 874

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 875  ----AIASKAIYPITPISNLSENSYAIILIEVQKIKVIRTKKGENMAFLQVDDSKKKLDV 930

Query: 1030 NFF 1032
              F
Sbjct: 931  TLF 933


>gi|55980149|ref|YP_143446.1| DNA polymerase III subunit alpha [Thermus thermophilus HB8]
 gi|55771562|dbj|BAD70003.1| DNA polymerase III alpha subunit [Thermus thermophilus HB8]
          Length = 2067

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/777 (38%), Positives = 425/777 (54%), Gaps = 72/777 (9%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAAD--QQPAIAITDTNNLFSALEFSQKA 62
           + +   F HL  H+ +SLL+GA  L+++L  +     + PA+A+TD  NLF A+EF +KA
Sbjct: 1   MGRKLRFAHLHQHTQFSLLDGAAKLSDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKA 60

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              GI+PI+G +  +  +       +GK        + LL     GYQ L+ L SR YL 
Sbjct: 61  TEMGIKPILGYEAYVAAESRFDR-KRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYLE 119

Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
               +  RI    L+E   EGLI L+G     I +    +   +AE RL  +  +F DR 
Sbjct: 120 G-FYEKPRIDREILRE-HAEGLIALSGCLGAEIPQFILQDRLDLAEARLNEYLSIFKDRF 177

Query: 183 YVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           ++ +Q H   ++ + ++V+ + A  + L +VATN+  ++ +ED  AH+VL+A+   + + 
Sbjct: 178 FIEIQNHGLPEQKKVNEVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKSTLD 237

Query: 242 QKDRPRVTPDHYL-KNRSEMVSIFSDLP---EALENTVEIARRCSFILQVHA---PILPR 294
              R R   D +  K   EM ++F +     E  +NTVEIAR C+  L +       +PR
Sbjct: 238 DPGRWRFPCDEFYVKTPEEMRAMFPEEEWGDEPFDNTVEIARMCNVELPIGDKMVYRIPR 297

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA------------------------- 329
           F   E     + E   L      GL  R                                
Sbjct: 298 FPLPEG----RTEAQYLMELTFKGLLRRYPDRITEGFYREVFRLLGKLPPHGDGEALAEA 353

Query: 330 ----------------------KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
                                 K + A+    R  +EL+VI RM F GYFLIV D+I WA
Sbjct: 354 LAQVEREAWERLMKSLPPLAGVKEWTAEAIFHRALYELSVIERMGFPGYFLIVQDYINWA 413

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           ++N + VGPGRGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF    R
Sbjct: 414 RRNGVSVGPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRER 473

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           D VI+YV+ +YG ++VAQI T GSL +KAAL+DV R   +P+ + + L KLIP     P 
Sbjct: 474 DRVIQYVRERYGEDKVAQIGTLGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPK 533

Query: 488 SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            LQ AI      R     DP V  +LE++ +LEGL RHAS HAAG+VI   PL+ LVP+ 
Sbjct: 534 PLQEAIQVVPELRAEMEKDPKVREVLEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLM 593

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
           RD +   PVTQ++M  +E  GL+K DFLGL+TLT L +    +     V++D   +P DD
Sbjct: 594 RD-QEGRPVTQYDMGAVEALGLLKMDFLGLRTLTFLDEVKRIVKASQGVELDYDALPLDD 652

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
            +T+ LL+   T G+FQLES GM   L G++P   ED+IA++SLYRPGP+++I  Y  R 
Sbjct: 653 PKTFALLSRGETKGVFQLESGGMTATLRGLKPRRFEDLIAILSLYRPGPMEHIPTYIRRH 712

Query: 666 NGKEKIVS---IHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           +G E +      H    + P+L ET G+ +YQEQ+MQIA  ++GYSL EAD+LRR +
Sbjct: 713 HGLEPVSYSEFPHAEKYLKPILDETYGIPVYQEQIMQIASAVAGYSLGEADLLRRCL 769



 Score =  287 bits (735), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 100/277 (36%), Positives = 150/277 (54%), Gaps = 12/277 (4%)

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
             + SHAAAY+++SYQTA++K HYPVEF+AA +++E  + +K+ ++ +DAR   I+++PP 
Sbjct: 1659 VHNSHAAAYSLLSYQTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARAMGIEVLPPD 1718

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNR 879
            VN    DF V   +I + L+A+K VG   A  I+ E     P+ SL DF  R+D K LN+
Sbjct: 1719 VNRSGFDFLVQGRQILFGLSAVKNVGEAAAEAILRERERGGPYRSLGDFLKRLDEKVLNK 1778

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R LESL+ AGALD FG  R +LL SL+ + K+A    +   +    +F+       ++  
Sbjct: 1779 RTLESLIKAGALDGFGE-RARLLASLEGLLKWAAENREKARSGMMGLFSEV-----EEPP 1832

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NNI 995
            L + +  +   R   E+  LG Y SGHP+  Y P LR+      EE     R     + +
Sbjct: 1833 LAEAAPLDEITRLRYEKEALGIYVSGHPILRY-PGLRETATCTLEELPHLARDLPPRSRV 1891

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             LA MV    +K T+ G  +     S+     EA  F
Sbjct: 1892 LLAGMVEEVVRKPTKSGGMMARFVLSDETGALEAVAF 1928



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%)

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            SE  V+  +MGKK  EEM   +ERF+ GA + G+ +  A  +F++L  FA+YGFNK   A
Sbjct: 1183 SEDLVVHNSMGKKKVEEMKSHRERFVQGAKERGVPEEEANRLFDMLEAFANYGFNKCLPA 1242

Query: 768  AYAVISYQTA 777
               V+ + T 
Sbjct: 1243 RARVVDWCTG 1252


>gi|225868663|ref|YP_002744611.1| DNA polymerase III alpha subunit [Streptococcus equi subsp.
            zooepidemicus]
 gi|225701939|emb|CAW99466.1| DNA polymerase III alpha subunit [Streptococcus equi subsp.
            zooepidemicus]
          Length = 1036

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/1026 (29%), Positives = 492/1026 (47%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+   +       AI I D +NL+ A  F +     G+QPI
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFKQAKRLGYQAIGIMDQDNLYGAYHFIKGCQRHGLQPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ I +++                ++ L+     GYQ+L++L +        K S  
Sbjct: 62   LGLEVAITVKE-------------QALTLKLVAKNDTGYQQLLKLSTE-------KMSGD 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L  L +   EG+ ++   S    D                    L  D          
Sbjct: 102  LDLDTLVQY-LEGIAVIVPFSQSLRDLG------------------LPFDYFI------- 135

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D    S + ++  T    L+      +    + E   +L A+  +  +S  D   V  
Sbjct: 136  GIDEA--SDLSKIGSTE--RLIPFRTVRYFDNAETETLQMLHAIRDN--ISLADTALVAK 189

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D +L    EM ++F +  PEAL N V +    ++        LPRF      +  K  + 
Sbjct: 190  DQFLAPCQEMTAVFQEKCPEALVNLVNLTASIAYHFDTDL-KLPRF------NRDKPAKE 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ELR    +GL  R            + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELRELTESGLRER--------QLWKEPYQSRLAEELAIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AY+L IT IDP++ +LLFERFLN +R SMPD DID     R E
Sbjct: 295  RGYYMGMGRGSAAGSLVAYSLRITGIDPVKNNLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             + YV+++YG E  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLHYVRDRYGSEHSAQIVTFSTFGPKQAVRDVFKRFGVPEYELTSLTKKIGF---KDTLS 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                 +  FR+   +     +  EI++++EG  R  S HAAGIV+ D  L+  +P+ +  
Sbjct: 412  TVYEKNIAFRQTINSRLEFQKAFEIAKRIEGNPRQTSIHAAGIVMSDDHLTNHIPLKK-- 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHET 608
              D+ VTQ++   +E  GL+K DFLGL+ LTL+QK  +  +   G+ +D+  I  +D ET
Sbjct: 470  GEDMMVTQYDASAVEANGLLKMDFLGLRNLTLVQKMQEKVVNDYGLSIDIEAINLEDPET 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E  G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  IALFARGDTKGIFQFEQHGAISLLKRIKPTSFEEIVATTSLNRPGASDYTQNFIKRRQGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E I  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM + 
Sbjct: 590  ENIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLVEMQRM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F++GA   G S+  A  +F  + KFA YGFN+SHA AYA +++Q A+ K HYP  F 
Sbjct: 650  QEDFLNGAKALGRSEETARLLFARMEKFAGYGFNRSHAFAYAALAFQLAYFKAHYPEVFF 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M     +      +  DA  F  +    ++NT   + K+  ++IY  L  IKG+   
Sbjct: 710  DVMMNYSSSD------YITDALDFGFEAAQVTINTIPFNDKIERHKIYMGLKNIKGLPRE 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             +  I+E   ++PF S+E+F   +  K      LE L+  G  D F  +R +++ +L+ +
Sbjct: 764  FSYWIIE---NRPFTSVENFLCSIPEKYQKTSFLEPLIKIGLFDGFEKNRQKIINNLEGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++FA    ++       +    +++ ++  EQ +LG   S HPL
Sbjct: 821  LTFV--------NELGSLFADSSFSW------VETEDYSAAEKYYFEQDLLGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +            ++     L   + + +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  L----AVAEKSTVAVTPITKLVKDTEATLLVQIDAIRVIRTKSSGQQMAFLSVTDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|290961571|ref|YP_003492753.1| DNA polymerase III subunit alpha [Streptomyces scabiei 87.22]
 gi|260651097|emb|CBG74218.1| putative DNA polymerase III, alpha chain [Streptomyces scabiei 87.22]
          Length = 1174

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/1072 (26%), Positives = 468/1072 (43%), Gaps = 79/1072 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL+  S +SL  GA     + ++ +     A+A+TD + L  A+ F++    AGI+
Sbjct: 7    PGFTHLRTASGFSLRHGASHPERLAERASERGMDALALTDRDTLAGAVRFAKACAGAGIR 66

Query: 69   PIIGCQLDIDMQDNLKMTNQ-------GKTPFPTVPSIVLLVS-TAEGYQRLIELVSRMY 120
            P+ G +L +++ +      +       G     + P +  L    A G+  L  +VS  +
Sbjct: 67   PLFGAELAVEVPEAAVRRARRRAPVRGGAFIDESTPRVTFLAREGATGWAELCRIVSAAH 126

Query: 121  LL---DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
                   G   V   L W  E   EGL +L G     + RA        A K L+ +++ 
Sbjct: 127  ADSGPGGGGSEVPPLLPW-SESAAEGLTVLLGP-GSDVGRALAAGRPDRAAKLLVPWRER 184

Query: 178  FGDRLYVNLQRHR----GYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +GD L +    H     G    R + + V  A    +  V +N   +         DVL 
Sbjct: 185  YGDALRLEAVWHGREGTGPGSLRLAARTVGFAAEQRVRPVLSNAVRYADPGMGPVADVLD 244

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARRC 281
            A     V         + + +LK    M+ +   + EA           LE T   A  C
Sbjct: 245  AAR-RLVPVDPRGELDSGEAWLKGADAMLGVAERVVEAAGFRRDTAHRLLEQTRATAAEC 303

Query: 282  SFILQVHAPILP-RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQ 339
                +    +    F E              R  A   L  R A G +  GY A+  Y +
Sbjct: 304  LVDPEDDLGLGTVHFPEPRLVGAG-------RRTAQRALASRAAAGMVRHGYGARRAYWE 356

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            R+  EL+VIA   F+ YFL VA  +   ++  I V   RGSGAGS+  + L I   DP+ 
Sbjct: 357  RMHQELDVIAHHGFASYFLTVAQVVDDVRRMGIRVA-ARGSGAGSLVNHLLDIAHADPVE 415

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              LL ERFL+  R+++PD DID    RR EV R +  ++G ERVA +    + + + A+R
Sbjct: 416  HGLLMERFLSKRRVALPDIDIDVESARRLEVYRAIIGRFGTERVATVAMPETYRVRHAVR 475

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            DVG AL +  + +DR+ K  P+  A      A+ +    R+         RL E+ + L+
Sbjct: 476  DVGAALSLDPADIDRIAKSFPHIRARDARA-ALEELPELRQLAGEKQRYGRLWELVEALD 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
             L R  + H  G+++ D  L    P+       LP++QF+   +E  GL+K D LG++  
Sbjct: 535  ALPRGVAMHPCGVLLSDASLLSRTPVMPTSGEGLPMSQFDKDDVEDLGLLKLDVLGVRMQ 594

Query: 580  TLLQKSLDFLAQ-RGVKVDLSLIPFD----DHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            + +  ++  +A+  G +VDL  + F+    D  TY L+ +  TLG FQ+ES G R  +  
Sbjct: 595  SAMAHAVAEVARATGERVDLDALDFERGAGDPATYELIRSTETLGCFQIESPGQRDLVGR 654

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +QP    D++  +SL+RPGP+  D +  +   ++G+  +   H  +   L+ET GV+++ 
Sbjct: 655  LQPATFHDLVVDISLFRPGPVAADMVRPFIAARHGRAPVRYPHEDLAEPLRETYGVVVFH 714

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQ++ I  L++G    EAD +RR +     E   + +  F   A+  G         + +
Sbjct: 715  EQIIDIVHLMTGCGRDEADRVRRGLS--DPESQGRIRVWFAQHAAAKGYDAETIQRTWGI 772

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  F  YGF K+HA A+AV +YQ+AW+KTH+P  F A  +T +     K +    DAR+ 
Sbjct: 773  VEAFGSYGFCKAHAVAFAVPTYQSAWLKTHHPAAFYAGLLTHDPGMYPK-RLLLADARRR 831

Query: 813  NIQIMPPSVNTPCVDFKVG------------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
             + ++P  VN   V   +                I  +L+ + G+    A  I      +
Sbjct: 832  GVPVLPLDVNRSAVAHCIELVSESKGSGEERTWGIRLALSDVHGISEAEAARIA---GGQ 888

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            P+ SL DF  R    + +R + + L   GALD FG +R  L   L  + +      +   
Sbjct: 889  PYASLLDFWERA---RPSRPLAQRLAQVGALDAFGANRRDLQLHLTELHR----GARGAG 941

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                 +     G  +    L   S   S+ R   E  VL    S + +D ++  L ++G+
Sbjct: 942  GGQLPLAG---GRRTAPAGLPDLS---SAERLSAELGVLSMDVSRNLMDDHRAFLDELGV 995

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                    T  G  + +A    + Q    R G R+ + T  +     +  FF
Sbjct: 996  VSARRLRETRHGETVLVAGAKAATQTPPIRSGKRVVFTTLDDGTGLVDLAFF 1047


>gi|319947285|ref|ZP_08021518.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            australis ATCC 700641]
 gi|319746527|gb|EFV98787.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            australis ATCC 700641]
          Length = 1033

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1024 (29%), Positives = 488/1024 (47%), Gaps = 103/1024 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   S Y+ ++  +S+ + + +        I + D +NL+   EF ++   AG+  ++
Sbjct: 3    TQLDTKSVYTFMDSLVSIRDYIQRAKEMGYQQIGLMDIDNLYGGYEFLEECQKAGMGAVL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  L++++                  SI L+    +GY+ LI++ S   +      + + 
Sbjct: 63   GLDLEVELP-------------AGPLSIRLIALGTKGYKHLIKISSMKMMGTTDWSAFQH 109

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             L  +        I++                              F    Y++L    G
Sbjct: 110  FLEDIA-------IVV----------------------------PYFEGIEYLDL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D          A     P+   +   + S  D E+  +L A+ ++  + +     V   
Sbjct: 131  QDFAIGVFPDTPAKQFSRPVFPLHTVRYFSTSDLESLQMLHAIRNNCSLKEVGA--VDTS 188

Query: 252  HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                   E+   F  + P+++    +      + +      LPRF      + +K    E
Sbjct: 189  MMFLPPEELERAFVHNYPDSIAYLEKALVAVHYEIDTQL-KLPRF------NPEKPAVEE 241

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  +  GL         +KG     Y++RL  EL VI +M F  YFLIV D +++ +  
Sbjct: 242  LRELSEEGLR--------SKGLDQTVYQERLRHELAVIHQMGFDDYFLIVWDLLRFGRSQ 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVAYALDITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPKF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YV+N+Y    VAQI+TF +  AK A+RDV +    P  ++  L K I           
Sbjct: 354  IQYVKNRYRSPHVAQIVTFSTFGAKQAIRDVFKRFGTPEYELTNLTKRIG---LRDTLAS 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   +  FR+A  + P   +  EI++++EG  R  S HAAG+V+    L+  +P+     
Sbjct: 411  AYEKNLAFRQAIQSRPEYRKGFEIAKRIEGQPRQTSIHAAGVVMSGEDLTNQIPIKM--G 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             ++ +TQ++   +E  GL+K DFLGL+ LT  Q+  + + ++    + +  IP +D ET 
Sbjct: 469  EEMNLTQYDAHGVEANGLLKMDFLGLRNLTFAQRMQEAVKEKYQKDIKIEDIPLEDPETI 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E +G  + L  +QP C E+I+A  SL RPG  D I  +  RK+GKE
Sbjct: 529  ALFAAGNTKGIFQFEQTGAIRLLRRVQPSCFEEIVATTSLNRPGASDYIDNFVKRKHGKE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  I P ++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK   EM + +
Sbjct: 589  KVDMIDPSLEGILAPTYGIMLYQEQVMQVAQTFAGFSLGKADILRRAMGKKNVAEMHRME 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA   G S   A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F  
Sbjct: 649  DDFIKGAIALGHSAEKAKQVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKVHYPDVFFD 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA QF+ Q+ P ++NT     K  D +IY  +  IKG+    
Sbjct: 709  IMLNYSSSD------YLTDALQFDFQVAPLTINTIPYKDKFQDQKIYLGMKNIKGLPKDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I++    +PF+S+EDF  R+ ++     +L  LV  G  DCF  +R ++LQ+L N+ 
Sbjct: 763  AYWIID---QRPFESIEDFILRLPNQYHKLPLLTPLVELGLFDCFEKNRRKVLQNLPNLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +A        ++  ++F     +++D          + + ++E EQRV+G   S HPL 
Sbjct: 820  VFA--------DELGSLFGQANYSWTDA------EDYSKAEKYEMEQRVIGVGLSPHPL- 864

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +     +      +   G    +   V S +  +T+ G  + ++  S+  K+ + 
Sbjct: 865  ---VEIVAASSQPTRPIASLSEGEQATILVEVQSIRTIRTKNGENMAFLQVSDLQKKMDV 921

Query: 1030 NFFP 1033
              FP
Sbjct: 922  TLFP 925


>gi|306831259|ref|ZP_07464419.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            gallolyticus subsp. gallolyticus TX20005]
 gi|304426495|gb|EFM29607.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            gallolyticus subsp. gallolyticus TX20005]
          Length = 1035

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/1026 (28%), Positives = 491/1026 (47%), Gaps = 103/1026 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   +    +     I I D +NL++A  F ++A    +QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLEGYVKAAKSLGYQTIGIMDKDNLYAAFHFIEEAKKQSLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L   +++ L +             + LL     GY+ L+++ S+    D       
Sbjct: 62   VGLELSFAVEETLSLK------------LYLLAQDTTGYKNLMKISSKQMSSD------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L  L +  T   I++                 +  E   L F        Y+ +  + 
Sbjct: 103  IQLDELSDYLTGVAIVVP--------------YFEELETLSLPFD------YYIGVDVNS 142

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                            +E P+       +    + E   +L A+  +  +S KD P  + 
Sbjct: 143  PQ------------KAYEKPIFPLYTVRYFETNEVETLHMLHAIRDN--ISLKDAPPASQ 188

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               L     +   F +  P+ALEN  ++     +        LPRF      + QK  + 
Sbjct: 189  GQNLLACDILTQAFRETFPQALENQEKLVSNIHYEFDTDL-KLPRF------NRQKPAQE 241

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL  +  AGL         AK      Y++RL  EL+VI +M F  YFLIV D +++ + 
Sbjct: 242  ELIERTEAGLR--------AKNLWLPAYQERLKKELSVIHKMGFDDYFLIVWDLLRFGRS 293

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ +YAL IT IDP++ +LLFERFLN +R SMPD DID     R E
Sbjct: 294  RGYYMGMGRGSAAGSLVSYALDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYRSE 353

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             + YV+N+YG    AQI+TF +  AK A+RDV +    P  ++  + K I          
Sbjct: 354  FLHYVRNRYGSLHSAQIVTFSTFGAKQAIRDVFKRFGAPEHELTNITKKISFRDTLT--- 410

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                 +  FR+   +     +   I++++EG  R  S HAAG+V+ D  L++ +P+    
Sbjct: 411  SVYEKNLSFRQIINSKIEYQKAFAIAKRIEGNPRQTSIHAAGVVMSDDNLTEHIPL--KA 468

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D+ +TQ++ + +E  GL+K DFLGL+ LT +Q+  + +A+   V +D+  I  +D +T
Sbjct: 469  GEDMMITQYDAQAVEANGLLKMDFLGLRNLTFVQRMQEKVAKDYGVTIDIKSIDLEDKKT 528

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ +QP   EDI+A  SL RPG  D    +  R+ G+
Sbjct: 529  LELFAAGKTKGIFQFEQAGAINLLKRIQPRQFEDIVATTSLNRPGASDYTENFIKRRFGQ 588

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++  I PL+ P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  ++M K 
Sbjct: 589  EEVDLIDPLVAPILEPTYGIMLYQEQVMQIAQIYAGFTLGKADLLRRAMSKKKADDMQKM 648

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  F+ G+ + G     A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 649  ESDFLEGSQRLGRPLETAKDLFSRMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 708

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA     ++    +NT     K+ D +IY  L  ++GV   
Sbjct: 709  DVMLNYSSAD------YITDALDSQFKVKKIDINTVPYSDKISDGQIYLGLKNLRGVPRD 762

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
                I+E   ++PF S+EDF +R+      R ++  LV  GA D F  +R +++++LD +
Sbjct: 763  LCYWIIE---NRPFSSVEDFLTRLPENYQKREMITPLVEVGAFDQFDKNRRKIIENLDPL 819

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++FA    ++ +           ++ ++  EQ +LG   S HPL
Sbjct: 820  LIFV--------NELGSLFADTSYSWIET------EDYPNAEKYRLEQSLLGVGISPHPL 865

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   K +             +   +   +  +T+ KG ++ +++ ++  K++
Sbjct: 866  L----EIARQSTKDFTALADLQENTEATILVELNQIRVIRTKTKGEQMAFLSVTDTQKKF 921

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 922  DVTLFP 927


>gi|255323961|ref|ZP_05365087.1| putative DNA polymerase III, alpha subunit [Corynebacterium
            tuberculostearicum SK141]
 gi|255299141|gb|EET78432.1| putative DNA polymerase III, alpha subunit [Corynebacterium
            tuberculostearicum SK141]
          Length = 1039

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/1031 (26%), Positives = 437/1031 (42%), Gaps = 96/1031 (9%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +  F  L   SSYS L+GA     ++ +        +AI D +  +  ++F++ A  AG
Sbjct: 44   SAVPFAELHAVSSYSFLDGAAEPEELVARAVELGLEGLAIVDCDGFYGLMKFAEAAAKAG 103

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +  +                  G         + +L  T EGY+RL  L++R  +    K
Sbjct: 104  LPAVY-----------------GAELSLAEAPVTVLARTPEGYRRLSRLIARARMEAGEK 146

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V      L E+  E          G     FF    +   +     +++  D + +  
Sbjct: 147  DRVAYPP--LDEVARE--------LEGE---CFFLVGPEALAEIDNLLERIKIDSIVLEY 193

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  +   + + +           A   +    +    A    +A   S   +     
Sbjct: 194  SCSMSPEDADQHRFLDKYNNLRAIATARPAAATRDQARLAAAKRALARRESLAAAAPHAH 253

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +    +L++  +M  +  D PE +  TV +AR CSF     AP LP F   E       
Sbjct: 254  PMGAG-WLRSGEQMAQLLPDRPELIAETVALARECSFTWDALAPNLPHFPVPEG----YT 308

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E + L ++     + R A          Q  R+++  EL VI ++ F GYFLIV D + +
Sbjct: 309  EMSWLEHEVWRRAKDRYAS---RPAEIRQAARKQIRHELGVIKQLGFPGYFLIVCDLVDF 365

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             ++ NI +  GRGS A S   +AL IT+ +P+   LLFERFL+PDR   PD DID    R
Sbjct: 366  CRRENI-LCQGRGSAANSAVCFALGITNAEPISAQLLFERFLSPDRDGPPDIDIDIESGR 424

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+YV   +G +R AQ+    + + K A RD  RAL  P    D   K     PA  
Sbjct: 425  REEVIQYVYRTHGRDRAAQVANVITYRRKGATRDAARALGYPQGSADAWSKGTSEPPADV 484

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             SL                         +++  G  RH   H+ G+V+ DRP++ +VPM 
Sbjct: 485  SSL-------------------------AEQFLGQPRHLGIHSGGMVLCDRPIADVVPME 519

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                 +  V Q++      AGL+KFD LGL  L  L   +D +      +V L  +   +
Sbjct: 520  WARMENRSVLQWDKDDCAAAGLVKFDLLGLGMLEALHHMIDAVRATTGREVHLWELDLAE 579

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNN 663
             E Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI       Y  
Sbjct: 580  PEVYDMLCRADAVGVFQVESRAQLATLPRLKPRRFFDLVVEVALIRPGPIQGGSVHPYLR 639

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R++G E++   HP+++  L +T G+ ++QEQ+MQIA   +G+S +EAD LRRAM  K+  
Sbjct: 640  RRDGLEEVTYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFSGAEADDLRRAMGSKRSP 699

Query: 723  EEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            E+M   + RF +G  + NGI   +A  ++  +  FA YGF +SH+ ++A + Y +AW K 
Sbjct: 700  EKMAALRSRFFAGLRETNGIEGEVAEKLWAKIVAFAAYGFPESHSQSFASLVYFSAWFKY 759

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLA 840
            HYP EF    +  +       +   QDAR+  ++++P S+N         G   I   L 
Sbjct: 760  HYPAEFCVGLLRAQPMGFYSPQSLIQDARRHGVRVLPVSINDSGAQAHATGSAEIRLGLN 819

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             IKG+G + A+ +    A  PF S+ D   R D    +   +E+L  AGAL+C G  R Q
Sbjct: 820  LIKGLGESAAKRV---EAGAPFTSMSDLSRRADL---SVEQVEALATAGALECLGLDRRQ 873

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             L                   + E +        S           ++      +    G
Sbjct: 874  ALWQAGVA-----------ATEREGMLPGTSALAS-----PHLPGMSAFELMATDVAATG 917

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
               +  P+++ +  L    +           G  +R+A ++  +Q+ +T  G    ++  
Sbjct: 918  VTHNQQPMELVRASLA--DVLPASHLPHVPDGTRVRIAGIITHRQRPRTASGLT--FLGV 973

Query: 1021 SEPAKEYEANF 1031
             +         
Sbjct: 974  EDETGLMNVMV 984


>gi|77464705|ref|YP_354209.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides 2.4.1]
 gi|77389123|gb|ABA80308.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides 2.4.1]
          Length = 940

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/986 (25%), Positives = 427/986 (43%), Gaps = 75/986 (7%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +  FV L   S+++ L GA     ++ + A+   PA+AI D N++   +    +A     
Sbjct: 12  AMPFVELSATSNFTFLTGASHPEELMRRAASLGLPALAIADENSVAGIVRAYGEAKE--- 68

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
                  +  +     ++    +       S+ +L      + RL  L++        K 
Sbjct: 69  -------IARETGSAPRLIPAARIVVREGMSVTVLPRDRAAWGRLCRLLTLGRRA-APKG 120

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
           S  +  + L        ++L   +                             R+ + L 
Sbjct: 121 SCDLGFADLLAHAEGQEMLLHPPARSSGGWQTL----------AARLAAACPGRVALILA 170

Query: 188 RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H  G DR R  +   LA    +P VA+   +          DVL A+     V +  R 
Sbjct: 171 PHYAGQDRVRFERQALLAARLGIPTVASGLPILHHGARRRLADVLTAIRLGCRVDELGRR 230

Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +   +  L++ +EM+ ++    EA+  + EIA R  F L       P  I K      +
Sbjct: 231 ALVNGEQRLRSEAEMLRLYPGHEEAVFRSAEIAGRLDFCLSELRYEYPSEISK-----GE 285

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + L      GL  R   G   K         +   EL +I ++ +  YFL V D ++
Sbjct: 286 SPADRLARLTREGLVWRFPAGVPEK------IAAQARHELELIGKLGYEPYFLTVNDIVR 339

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+   I +  GRGS A S+  YAL +T +DP   +++FERF++  R   PD D+DF  +
Sbjct: 340 FARDRGI-LCQGRGSAANSIVCYALGVTSVDPEVGTMVFERFVSEARNEPPDIDVDFEHE 398

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+++ ++YG +R     T    + K A+R+VGRA+ +    +  +   I      
Sbjct: 399 RREEVIQHIYSRYGRDRAGLCATVIHYRGKRAVREVGRAMGLSEDTLTAMASQIWGWGGP 458

Query: 486 PVSLQAIADDSRFREARLADPSVDRLL---EISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                    + R RE  L DP+  RL    ++  +++G  RH S H  G VI +  L +L
Sbjct: 459 -----GALTERRLREIGL-DPNDRRLWLALQLIDEIQGFPRHLSQHVGGFVITEGRLDEL 512

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
           VP+         V  ++   I+  G++K D L L  LT ++K+ D +         L+ +
Sbjct: 513 VPIENAAMEGRTVICWDKDDIDMLGILKVDVLALGMLTCIRKAFDLIESHHHTSYTLATL 572

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
           P DD +TY +L    +LG+FQ+ES      L  M+P C  D++  V++ RPGPI  D + 
Sbjct: 573 PRDDSQTYDMLCRADSLGVFQVESRAQMNFLPRMRPRCFYDLVVQVAIIRPGPIQGDMVH 632

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            Y  R+NG+E        +  +L +T GV ++QEQ MQIA + + +S  EAD LRRA+  
Sbjct: 633 PYIRRRNGQEDPHLPSDALGKVLGKTLGVPLFQEQAMQIAIIGANFSPEEADRLRRALAT 692

Query: 720 -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K    + + KERF++G   NG  K  A   F  +  F  YGF +SHAA++A++ Y +AW
Sbjct: 693 FKKHGNVTELKERFMNGMLANGYDKDFATRCFSQIEGFGSYGFPESHAASFALLVYASAW 752

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI--- 835
           +K H+P  F  A +  +        +  +DAR   + ++PP +N    D  +  +R    
Sbjct: 753 IKCHHPGIFACALLNAQPMGFYAPAQIVRDARAHGVIVLPPCINASLWDNVMERDREGRL 812

Query: 836 --YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
                   IKGV    A+ I+ A  +  + ++ED   R     +    +  L  A     
Sbjct: 813 ALRLGFRQIKGVAEEEAQWIVAARGNG-YRAVEDIWRRA---GVPPATVTRLAEADCFAA 868

Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRT-NKHENIFAHE---KGTFSDKITLEKFSVENSS 949
            G +R +           AQW  +  + ++   +FA +   +G    ++ L + ++    
Sbjct: 869 LGLTRRE-----------AQWQARALSGDRPLPLFAGDMDGEGIVEPEVVLREMTLGEEV 917

Query: 950 VRFENEQRVLGFYFSGHPLDVYKPIL 975
           V    +          HP+ + + ++
Sbjct: 918 V---EDYVSFRLSLRSHPMALLRELV 940


>gi|330942778|gb|EGH45303.1| error-prone DNA polymerase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 873

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/896 (27%), Positives = 405/896 (45%), Gaps = 58/896 (6%)

Query: 154  PIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLV 212
             +        +Q         ++ F +RL++ +  HRG D   R + ++ LA +  +P V
Sbjct: 2    ALWLPDLDGDAQACLAGGRWLRERFTERLWLGVGLHRGPDDEQRLADLLALAQSLGIPAV 61

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEAL 271
            A+ +    +       D + A+ H T V++         + +L+    +   + D    L
Sbjct: 62   ASGDVHMHARGRRALQDTMTAIRHHTTVAEAGHLLFANGERHLRPLDALSEHYPDW--LL 119

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
              +V IARRC+F L       P  +  +     +   + LR     G+  R   G     
Sbjct: 120  AESVRIARRCTFDLGDLKYEYPHELVPKG----QTSTSWLRELTERGVRRRWPSGLTPAT 175

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
                  R +++ EL +IA  KF  YFL V D +++A+  +I +  GRGS A S   YAL 
Sbjct: 176  ------RAQVEKELALIAEKKFDSYFLTVHDIVEFARSQHI-LCQGRGSAANSAVCYALG 228

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT+++P + +LLFERF++ +R   PD D+DF  DRR+EVI+Y+  +YG  R A      +
Sbjct: 229  ITELNPEQSNLLFERFISRERNEPPDIDVDFEHDRREEVIQYIFRRYGRGRAALTAVAST 288

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD--PSVD 509
                 A+RDV + L +P  Q++ L +             ++    R RE       P + 
Sbjct: 289  YHGSGAMRDVAKVLGLPPDQINALAEAFSRWS------DSLPSPERLREYGFDADTPILK 342

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            R+L ++ +L G  RH S H  G VI + PL  LVP+     +D  + Q++   ++  GL+
Sbjct: 343  RVLALTGELIGFPRHLSQHPGGFVISEHPLETLVPVENAAMADRTIIQWDKDDLDLVGLL 402

Query: 570  KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K D L L  L+ L+++ D +   RG +  L+ +P DD +TY +++   T+G+FQ+ES   
Sbjct: 403  KVDILALGMLSALRRTFDLVHLHRGQRWTLATLPGDDRKTYEMISRADTVGVFQIESRAQ 462

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
               L  ++P+   D++  V++ RPGPI  D +  Y  R+NG+E +    P ++ + K T 
Sbjct: 463  MAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRRNGEEAVTYP-PKLESVFKRTL 521

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTI 745
            GV ++QEQVM++A L + Y+  EAD LRRAM   K    ++  +ER  +G  KNG     
Sbjct: 522  GVPLFQEQVMEVAILAADYTPGEADELRRAMAAWKRHGGLEPHRERLRTGMLKNGYEADF 581

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A  IFE +  F  YGF +SHAA++A+++Y + W+K H P  F  A +           + 
Sbjct: 582  ADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPAAFTCALINSWPMGFYSPDQL 641

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGD---------NRIYYSLAAIKGVGTTTARHIMEA 856
             QDAR+ +I+I P  V     D  +             I   L  ++      A  I  A
Sbjct: 642  LQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDRTRNLAIRLGLRMVRSFREEDALRIEAA 701

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
             A +PF    D   R +    + R  E+L  +GAL      R +    +  +        
Sbjct: 702  RAKRPFVDATDLTLRAEL---DSRAAEALADSGALRGLIGHRHRARWEVAGV-------- 750

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                     +F       +  I      +   +     +   LG     HPL + +  L 
Sbjct: 751  ----EAQRPLFDDLPSEETQVI----LPLPTVAEDLVADYTTLGTTLGPHPLALLRRQLA 802

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +  ++ +       + +A +V+ +Q+  T  G  + +VT  +         +
Sbjct: 803  AKRFRSSQDLLHLENDRTLSVAGLVIGRQRPGTASG--VTFVTLEDEFGMVNVVVW 856


>gi|307706663|ref|ZP_07643470.1| DNA polymerase III subunit alpha [Streptococcus mitis SK321]
 gi|307618118|gb|EFN97278.1| DNA polymerase III subunit alpha [Streptococcus mitis SK321]
          Length = 1033

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1023 (29%), Positives = 492/1023 (48%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S++  +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIDKYVRVAKDYGYTHLAMMDIDNLYGAFDFLEVTKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++++ + D                ++  L  ++ GYQ+L++L +      QG++S  +
Sbjct: 63   GLEMNVLVDDKD-------------VNLRFLALSSVGYQQLMKLSTA---KMQGEKSWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++I    +I+                               F +   +NL    G
Sbjct: 107  LSQYLEDIT---VIV-----------------------------PYFEELELLNL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++          +D E   VL A+  +  + +   P  +  
Sbjct: 131  CDYYIGVYPETLASEFHHPILPLYRVNTFESKDREVLQVLTAIKENIPLREV--PLRSRQ 188

Query: 252  HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F    P+ LEN  ++    S+ L      LPRF               
Sbjct: 189  DVFISASSLEKLFQERFPQTLENLEKLISGISYDLDTSL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G   K   +++Y+ RLD EL VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGLAQKELTSKEYQDRLDQELAVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLQ---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKH--G 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHIKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  ALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLAPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F  
Sbjct: 649  ASFIQGSIEAGHTAEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKMHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    
Sbjct: 709  VMLNSANSD------YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSKDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  ALWILE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLVNLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ + +         ++F     ++ D          +   +F  EQ +LG   S HPL 
Sbjct: 820  EFVKVL--------GSLFGETIYSWQDS------EDWSEQEKFYMEQELLGVGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIASKAIYPITPISNLSENSYAIILVEVQKIKVIRTKKGENMAFLQVDDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|148984631|ref|ZP_01817899.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP3-BS71]
 gi|147923022|gb|EDK74137.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP3-BS71]
 gi|301799883|emb|CBW32460.1| DNA polymerase III alpha subunit [Streptococcus pneumoniae OXC141]
          Length = 1033

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/1023 (28%), Positives = 487/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +      QG+++  +
Sbjct: 63   GLEMTVFVDD-------------QEVNLRFLALSSVGYQQLMKLSTA---KMQGEKTWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++I    +I+                               F     + L    G
Sbjct: 107  LSQYLEDIA---VIV-----------------------------PYFDRVESLEL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++           D E   VL A+  +  + +   P  +  
Sbjct: 131  CDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSRQ 188

Query: 252  HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F    P+AL+N  ++    S+ L +    LPRF               
Sbjct: 189  DVFISASSLEKLFQERFPQALDNLEKLISGISYDLDISL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGFVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  DLFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  +   ++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLDSALEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   +  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  ASFIQGSIEAGHTAEKSEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++   S+NT     K+ +  IY  L +IKG+    
Sbjct: 709  VMLNYSNSD------YLIDALEAGFEVASLSINTIPYHDKIANKSIYIGLKSIKGLSKDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E     P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  ALWIIEHR---PYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ +        +  ++F     ++ +              +F  EQ +LG   S HPL 
Sbjct: 820  EFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|254419943|ref|ZP_05033667.1| DNA polymerase III, alpha subunit subfamily, putative [Brevundimonas
            sp. BAL3]
 gi|196186120|gb|EDX81096.1| DNA polymerase III, alpha subunit subfamily, putative [Brevundimonas
            sp. BAL3]
          Length = 1121

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/1069 (22%), Positives = 423/1069 (39%), Gaps = 85/1069 (7%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--- 62
               P++  L   S++S L GA    +++          + + D N +   +         
Sbjct: 5    NSPPAYAELAAASNFSFLRGASHPKSLVLSAILRGHTGLGLADRNTVAGVVRAWSALNTL 64

Query: 63   CAAGIQP---------------IIGCQLDIDMQDNLKMTNQGKTPF--------PTVPSI 99
               G+ P               +     D  + D ++   Q                P I
Sbjct: 65   RVEGLSPPEKVRDGGGPGETGFVEDLMNDPALSDMVEARAQDFRLLTGARLAFNDGTPDI 124

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            +       G+ RL  L++        K    I +S L     EGL+++            
Sbjct: 125  IAYAEDRAGWGRLTRLLTLGNRR-AVKGQCEIGISDLL-GDPEGLLLIVIPERHLEALPP 182

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLF 219
              +  + A    +        +         G DR R +++  +A   ++PL+A N+ L+
Sbjct: 183  LLSRLEAAAPGSVWLSAAMLRQ---------GDDRRRLTRLKAIANVADVPLLAINDVLY 233

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
                + +  DVL  +     +    R      + +LK  +EM  +F+D PEALE T  + 
Sbjct: 234  HDPSERDLQDVLTCIREGVTIEAAGRRLLANAERHLKPPAEMARLFADAPEALEQTQLLL 293

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
             R  F L+      P+             +  L +      ++R   G  AK        
Sbjct: 294  DRARFDLKDLTYNYPQEPTPPG----WSSQAYLEDLTWRHAQIRYPGGVSAK------VT 343

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
              L+ EL  I    F+ YFL + D ++ A    I +  GRGS A S   Y L IT +DP 
Sbjct: 344  DLLNKELAFIQIQGFAPYFLTIHDIVRVANSKGI-LCQGRGSAANSAVCYVLGITCVDPA 402

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               LLFERFL+  R   PD D+DF  +RR+E+I+++ ++YG  R     T    + K+A+
Sbjct: 403  ENDLLFERFLSDHRGEPPDIDVDFEHERREEIIQHIYDRYGRHRAGIAATVIRYRPKSAI 462

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
            R+VG+ L +      RL           +    +           A+P + R + ++ +L
Sbjct: 463  REVGKVLGLTEDVTARLAASQWGSWGAEIGDCHVEQ----AGLDPANPMIGRAVAMASRL 518

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
             G  RH S H  G ++    L +LVP+      D    +++   I+   L+K D L L  
Sbjct: 519  LGFPRHLSQHVGGFILTQDRLDELVPIGNAAMPDRTFIEWDKDDIDDLRLMKVDVLALGM 578

Query: 579  LTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT ++K+L+ + A      +L  +P +  + Y +L    ++G+FQ+ES      L  ++P
Sbjct: 579  LTCIRKALNLMHAHDDAAYELHTVPNEQADVYDMLCKGDSIGVFQVESRAQINMLPRLKP 638

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVS-----IH--PLIDPMLKETQGV 688
                D++  V++ RPGPI  D +  Y  R+   E+         H    +  +L +T GV
Sbjct: 639  RTFYDLVIQVAIVRPGPIQGDMVHPYLRRRAKLEEPEYSKPAPPHDPDELKKVLHKTLGV 698

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAV 747
             ++QEQ M++A + + ++  EA+ LR+AMG  +    + K + R ++   + G  +  A 
Sbjct: 699  PLFQEQAMKVAMVAAEFTPKEANGLRKAMGTFRGDGTLWKYEGRMVNRMVERGYERDFAQ 758

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
              F+ +  F  YGF +SHAA++  + Y ++++K  YP  F  A +  +        +  +
Sbjct: 759  RCFDQIKGFGSYGFPESHAASFGKLVYISSFIKCRYPAAFACALLNSQPMGFYAPAQIVR 818

Query: 808  DARQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
            DA++  ++I P  VN    D  +    G   +      I G     A+ ++ A + + F+
Sbjct: 819  DAQEHGVEIRPIDVNLSDWDNTLEGPPGLLALRLGFRQIDGFREEWAKALVVARS-RSFE 877

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
             +E    R        R L     A A    G  R + L ++  +   A           
Sbjct: 878  GVEALAGRASLPGSAMRKL---ADADAFRSIGMDRREALWAVRRLPDDA----------P 924

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
              +FA        +    +            + +        HP+ + +PI         
Sbjct: 925  LPLFAAADARELGEEDDARLPRMALGEHVAADYQTTRLSLKAHPMAILRPIFAAENTLTC 984

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             E      G  +R A +V+ +Q+    KG+ I ++T  +         +
Sbjct: 985  AELETRRSGAKVRTAGVVLVRQRPG--KGNAI-FITLEDETGVTNLVLW 1030


>gi|195978007|ref|YP_002123251.1| DNA polymerase III DnaE [Streptococcus equi subsp. zooepidemicus
            MGCS10565]
 gi|195974712|gb|ACG62238.1| DNA polymerase III alpha subunit DnaE [Streptococcus equi subsp.
            zooepidemicus MGCS10565]
          Length = 1046

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/1036 (29%), Positives = 493/1036 (47%), Gaps = 102/1036 (9%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            + + L++   F  L   + YS ++  + L++   +       AI I D +NL+ A  F +
Sbjct: 2    VVRTLKEMSMFAQLDTKTVYSFMDSLIDLDHYFKQAKRLGYQAIGIMDQDNLYGAYHFIK 61

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
                 G+QPI+G ++ I +++                ++ L+     GYQ+L++L +   
Sbjct: 62   GCQRHGLQPILGLEVAITVKE-------------QTLTLKLVAKNDTGYQQLLKLSTE-- 106

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 K S  + L  L +   EG+ ++        D                    L  D
Sbjct: 107  -----KMSGELDLDTLVQ-HLEGIAVIVPFRQSLSDLG------------------LPFD 142

Query: 181  RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                      G D   +   +  A      L+      +    + E   +L A+  +  V
Sbjct: 143  YFI-------GIDEASDLSKIGSAER----LIPLRTVRYFDNAETETLQMLHAIRDN--V 189

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
               D   V  D +L    E+ +IF +  PEAL N  E+    ++        LPRF    
Sbjct: 190  GLADTALVAKDQFLAPCQEVTAIFQEKCPEALLNLAELTASIAYHFDTDL-KLPRF---- 244

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              +  K  + ELR    +GL  R            + Y+ RL  EL +I+ M F  YFLI
Sbjct: 245  --NRDKPAKEELRELTESGLRER--------QLWKEPYQSRLAEELAIISDMGFDDYFLI 294

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++ +     +G GRGS AGS+ AY+L IT IDP++ +LLFERFLN +R SMPD D
Sbjct: 295  VWDLLRFGRSRGYYMGMGRGSAAGSLVAYSLRITGIDPVKNNLLFERFLNKERYSMPDID 354

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID     R E + YV+++YG E  AQI+TF +   K A+RDV +   +P  ++  L K I
Sbjct: 355  IDLPDIYRSEFLHYVRDRYGSEHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELASLTKKI 414

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                           +  FR+   +   + +  EI++ +EG  R  S HAAGIV+ D PL
Sbjct: 415  GF---KDTLSTVYEKNIAFRQTINSRLELQKAFEIAKCIEGNPRQTSIHAAGIVMSDDPL 471

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDL 598
            +  +P+ +    D+ VTQ++   +E  GL+K DFLGL+ LTL+QK  +  +   G+ +D+
Sbjct: 472  TNHIPLKK--GEDMMVTQYDANAVEANGLLKMDFLGLRNLTLVQKMQEKVVNDYGLSIDI 529

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I  +D ET  L     T GIFQ E  G    L+ ++P   E+I+A  SL RPG  D  
Sbjct: 530  EAINLEDPETIALFARGDTKGIFQFEQHGAISLLKRIKPTSFEEIVATTSLNRPGASDYT 589

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  R+ G+E I  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM 
Sbjct: 590  QNFIKRRQGQENIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMS 649

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK   EM + +E F++GA   G S+  A  +F  + KFA YGFN+SHA AYA +++Q A+
Sbjct: 650  KKNLVEMQRMQEDFLTGARALGRSEETARLLFARMEKFAGYGFNRSHAFAYAALAFQLAY 709

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
             K HYP  F    M     +      +  DA  F  +    ++NT   + K+  ++IY  
Sbjct: 710  FKAHYPEVFFDVMMNYSSSD------YITDALDFGFEAAQVTINTIPFNDKIERHKIYMG 763

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L  IKG+    +  I+E   ++PF S+E F   +  K      LE L+  G  D F  +R
Sbjct: 764  LKNIKGLPREFSYWIIE---NRPFTSVESFLCSIPEKYQKTSFLEPLIKIGLFDGFEKNR 820

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             +++ +L+ +  +         N+  ++FA    ++       +    +++ ++  EQ +
Sbjct: 821  QKIINNLEGLLTFV--------NELGSLFADSSFSW------VETEDYSAAEKYYFEQDL 866

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGW 1017
            LG   S HPL      + +            ++     L   + + +  +T+  G ++ +
Sbjct: 867  LGVGMSKHPLL----AVAEKSTVAVTPITKLVKDTEATLLVQIDAIRVIRTKSSGQQMAF 922

Query: 1018 VTFSEPAKEYEANFFP 1033
            ++ ++  K+ +   FP
Sbjct: 923  LSVTDTKKKLDVTLFP 938


>gi|307328895|ref|ZP_07608064.1| DNA polymerase III, alpha subunit [Streptomyces violaceusniger Tu
            4113]
 gi|306885405|gb|EFN16422.1| DNA polymerase III, alpha subunit [Streptomyces violaceusniger Tu
            4113]
          Length = 1194

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1090 (26%), Positives = 465/1090 (42%), Gaps = 91/1090 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL   S +S+  GA     +  + A     AIA+TD ++L  A+ F++    AG++
Sbjct: 2    PGFTHLHTASGFSMRYGAAHPERLAQRAAERGMDAIALTDRDSLAGAVRFARACERAGVR 61

Query: 69   PIIGCQLDIDMQDN--------LKMTNQGKTPFPTVPSIVLLVST-AEGYQRLIELVSRM 119
            P+ G  L +  +D               G     + P  V L    A G+  L  LVS  
Sbjct: 62   PLFGVDLAVRREDPEPGRTVRRRTPVRGGAFIDESTPRAVFLARDGAAGWAALCGLVSAA 121

Query: 120  YLLDQGKQSVR------ICLSWLQEIGTEG----LIMLTGGSSGPIDRAFFFNSSQVAEK 169
            +       S R        L W   +   G    L +L G  S  + RA        A +
Sbjct: 122  HAGLTHSGSARTNGDGPPLLHWRDLVSDPGALAPLTVLLGPDS-DVGRALAAGRPDRAAR 180

Query: 170  RLLTFKKLFGDRLYVNLQRHR----GYDRYRES-QVVQLAYTHELPLVATNNSLFLSEED 224
             +  + +LFGD L +    H     G    R + + +  A    +P V +N + +    +
Sbjct: 181  LIAPWHELFGDALRLEAVWHGRTGTGPGSLRLAARTLGFAADQGIPAVLSNAARYADPGE 240

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEA-----------LE 272
                DVL A      +  +    + + + +LK   +M      + EA           LE
Sbjct: 241  GPVADVLDAARRLVPIDPRTPGALDSGERWLKGPLDMAKAAERIVEAAGMRRDAAHRLLE 300

Query: 273  NTVEIARRCSFILQVHAPILP-RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
             T   A  C    + H  +    F E              R  A   L  R A   + +G
Sbjct: 301  ETRRTAAACLVDPEDHIGLGSVHFPEPRLVGAG-------RRSAERVLRSRCAAAMVLRG 353

Query: 332  YHAQDYR-QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
            Y     R +RL+ EL  I R+ F+ YFL VA  +   ++  I V   RGSGAGS   + L
Sbjct: 354  YDRDRVRWERLEDELRTIERLGFASYFLTVAQVVDDTRELGIRVA-ARGSGAGSFVNHLL 412

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             I   DP+   LL ERFL+  R ++PD DID    RR +V R +  ++G ERVA +    
Sbjct: 413  GIAHADPVANGLLMERFLSVRRAALPDIDIDVESARRLDVYRTIFERFGAERVATVSMPE 472

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            + + + A+RDVG AL M  ++VDRL K  P+  A      A+A+    R          +
Sbjct: 473  TYRVRHAVRDVGAALGMDPAEVDRLAKSFPHIRARDARA-ALAELPELRAVAAEQERFGK 531

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            L ++ + L+GL R  + H  G+++ D  L    P+        P++QF+   +E+ GL+K
Sbjct: 532  LWDLVEALDGLPRGIAMHPCGVLLSDAGLLARTPIVPTSGEGFPMSQFDKDDVEELGLLK 591

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP----FDDHETYHLLTTKGTLGIFQLESS 626
             D LG++  + +  ++  + +   +V     P      D  TY L+ +  TLG FQ+ES 
Sbjct: 592  LDVLGVRMQSAMAHAVTEIRRTTGRVVDIDDPGQVRPGDPATYDLIRSTETLGCFQIESP 651

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            G R  L  +QP    D++  +SL+RPGP+  D +  + + ++G++     HP ++  L+E
Sbjct: 652  GQRDLLGRLQPTTFHDLVVDISLFRPGPVAADMVRPFIDARHGRKPARYPHPDLEDALRE 711

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T GV+++ EQ+++I  +++G     AD  RRA+     E   + +  F + A K G +  
Sbjct: 712  THGVVVFHEQIIKIVSIMTGCERDLADEARRALS--NPERQGRVRAWFHAEAEKRGYAPE 769

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            + +  +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K + 
Sbjct: 770  VRLRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RL 828

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDN----------------------RIYYSLAAI 842
               DAR+  + I+P  VN     +++                          +  +L+ +
Sbjct: 829  LLADARRRGVPILPLDVNRSGAAYRIELTSGDSRGISNKEDRRSKGNEDSIGVRLALSDV 888

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             G+       I    A +P+ SL+D   R       R V E L   GALD FG SR  LL
Sbjct: 889  HGISEAETERIA---AGQPYSSLQDLWLRAH---PGRPVAERLAQVGALDAFGTSRRDLL 942

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              +  + +  +   +        +        +    L      ++  R   E  +LG  
Sbjct: 943  LQIAELHRQQRGAARRDAEGQLPLAETGPAAPAGLPDL------DADERLGAELGILGMD 996

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             S H +  ++  L ++G    +       G  + +A    + Q    R G R+ + T  +
Sbjct: 997  VSRHLMGDHRDFLEELGAIPAKRLRDAPHGEVVLVAGAKAATQTPPIRSGRRVIFTTLDD 1056

Query: 1023 PAKEYEANFF 1032
                 +  FF
Sbjct: 1057 GTGLVDCAFF 1066


>gi|322411903|gb|EFY02811.1| DNA polymerase III DnaE [Streptococcus dysgalactiae subsp.
            dysgalactiae ATCC 27957]
          Length = 1036

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/1026 (29%), Positives = 509/1026 (49%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L++  ++        I I D +NL+ A  F +     G++P+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLSHYFEQAKQLGYQTIGIMDRDNLYGAYHFIRGCQKHGLRPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++++  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEVVYQEQQVL-------------LNLIAKNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EGL ++                            +++ D L      + 
Sbjct: 102  LHMDYLCQ-HLEGLAVIIP-------------------------NRVWTDTLSFPFDYYI 135

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D+Y +   +  +    +PL     + + +++D E   +L A+  +  + +   P V  
Sbjct: 136  SVDQYTDFSSMD-SKRQFIPL---RTARYFAQDDMETLHMLHAIRDNLSLVET--PVVES 189

Query: 251  DHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D  L +  ++ + + +  P+AL+N  ++     +        LPRF      +  K  + 
Sbjct: 190  DQELGDCQQLTAFYQAHCPQALQNLEDLVSGIHYDFDTDL-KLPRF------NRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL+    AGL        +AKG   + Y+ RL  EL VI+ M F  YFLIV D +++ + 
Sbjct: 243  ELQELTQAGL--------VAKGLWHEPYQTRLAHELTVISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP+R  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVRHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                 +  FR+   +     +   I+Q++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 412  TVYEKNISFRQTINSRVEFQKAFAIAQRIEGNPRQTSIHAAGIVMSDDNLTNHIPL--KA 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              ++ VTQ++   +E  GL+K DFLGL+ LT +QK  + +A+    ++D++ I  +D +T
Sbjct: 470  GDEMMVTQYDANAVEANGLLKMDFLGLRNLTFVQKMQEKVAKEYGQQIDIAAIDLEDSQT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D  V +  R+ G+
Sbjct: 530  LALFAKGDTRGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTVNFIKRRQGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ  +G++L +AD+LRRAM KK   EM K 
Sbjct: 590  EKIDLIDPVIAPILESTYGIMLYQEQVMQIAQTYAGFTLGKADLLRRAMSKKNLLEMQKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F++GA + G S+  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  EEAFVAGAKQLGRSEETAKLLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M     +      +  DA + N Q+   ++N+     K+  N IY  L  IKG+   
Sbjct: 710  DIMMNYSSSD------YITDALESNFQVAQVTINSIPYTDKIEANSIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E  +   F S+EDF +RV  K      LE L+  G  DCF  +R ++L++L+ +
Sbjct: 764  FAYWIIEQRS---FSSVEDFLTRVPEKYQKIAFLEPLIKIGLFDCFDPNRKKILENLEGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++FA     + D          +++ ++  EQ ++G   S HPL
Sbjct: 821  IVFV--------NELGSLFADSSFNWVDT------EDYSTTEKYSFEQELIGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++     +   V S +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  ----IDIAEKSTQAFTPISQLVKDKEATILVQVDSIRTIRTKISGQQMAFLSVNDTKKKL 922

Query: 1028 EANFFP 1033
            + N FP
Sbjct: 923  DVNLFP 928


>gi|126463545|ref|YP_001044659.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105209|gb|ABN77887.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides ATCC
           17029]
          Length = 940

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/986 (25%), Positives = 427/986 (43%), Gaps = 75/986 (7%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +  FV L   S+++ L GA     ++ + A+   PA+AI D N++   +    +A     
Sbjct: 12  AMPFVELSATSNFTFLTGASHPEELMRRAASLGLPALAIADENSVAGIVRAYGEAKE--- 68

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
                  +  +     ++    +       S+ +L      + RL  L++        K 
Sbjct: 69  -------IARETGSAPRLIPAARIVVREGMSVTVLPRDRAAWGRLCRLLTLGRRA-APKG 120

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
           S  +  + L        ++L   +                             R+ + L 
Sbjct: 121 SCDLGFADLLAHAEGQEMLLHPPARSSGGWQTL----------AARLAAACPGRVALILA 170

Query: 188 RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H  G DR R  +   LA    +P VA+   +          DVL A+     V +  R 
Sbjct: 171 PHYAGQDRVRFERQALLAARLGIPTVASGLPILHHGARRRLADVLTAIRLGCRVDELGRR 230

Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +   +  L++ +EM+ ++    EA+  + EIA R  F L       P  I +      +
Sbjct: 231 ALVNGEQRLRSEAEMLRLYPGHEEAVFRSAEIAGRLDFCLSELRYEYPSEISR-----GE 285

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + L      GL  R   G   K         +   EL +I ++ +  YFL V D ++
Sbjct: 286 SPADRLARLTREGLVWRFPAGVPEK------IAAQARHELELIGKLGYEPYFLTVNDIVR 339

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+   I +  GRGS A S+  YAL +T +DP   +++FERF++  R   PD D+DF  +
Sbjct: 340 FARDRGI-LCQGRGSAANSIVCYALGVTSVDPEVGTMVFERFVSEARNEPPDIDVDFEHE 398

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+++ ++YG +R     T    + K A+R+VGRA+ +    +  +   I      
Sbjct: 399 RREEVIQHIYSRYGRDRAGLCATVIHYRGKRAVREVGRAMGLSEDTLTAMASQIWGWGGP 458

Query: 486 PVSLQAIADDSRFREARLADPSVDRLL---EISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                    + R RE  L DP+  RL    ++  +++G  RH S H  G VI +  L +L
Sbjct: 459 -----GALTERRLREIGL-DPNDRRLWLALQLIDEIQGFPRHLSQHVGGFVITEGRLDEL 512

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
           VP+         V  ++   I+  G++K D L L  LT ++K+ D +         L+ +
Sbjct: 513 VPIENAAMEGRTVICWDKDDIDMLGILKVDVLALGMLTCIRKAFDLIESHHHTSYTLATL 572

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
           P DD +TY +L    +LG+FQ+ES      L  M+P C  D++  V++ RPGPI  D + 
Sbjct: 573 PRDDSQTYDMLCRADSLGVFQVESRAQMNFLPRMRPRCFYDLVVQVAIIRPGPIQGDMVH 632

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            Y  R+NG+E        +  +L +T GV ++QEQ MQIA + + +S  EAD LRRA+  
Sbjct: 633 PYIRRRNGREDPHLPSDALGKVLGKTLGVPLFQEQAMQIAIIGANFSPEEADRLRRALAT 692

Query: 720 -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K    + + KERF++G   NG  K  A   F  +  F  YGF +SHAA++A++ Y +AW
Sbjct: 693 FKKHGNVTELKERFMNGMLANGYDKDFATRCFSQIEGFGSYGFPESHAASFALLVYASAW 752

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI--- 835
           +K H+P  F  A +  +        +  +DAR   + ++PP +N    D  +  +R    
Sbjct: 753 IKCHHPGIFACALLNAQPMGFYAPAQIVRDARAHGVIVLPPCINASLWDNVMERDREGRL 812

Query: 836 --YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
                   IKGV    A+ I+ A  +  + ++ED   R     +    +  L  A     
Sbjct: 813 ALRLGFRQIKGVAEEEAQWIVAARGNG-YRAVEDIWRRA---GVPPATVTRLAEADCFAA 868

Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRT-NKHENIFAHE---KGTFSDKITLEKFSVENSS 949
            G +R +           AQW  +  + ++   +FA +   +G    ++ L + ++    
Sbjct: 869 LGLTRRE-----------AQWQARALSGDRPLPLFAGDMDGEGIVEPEVVLREMTLGEEV 917

Query: 950 VRFENEQRVLGFYFSGHPLDVYKPIL 975
           V    +          HP+ + + ++
Sbjct: 918 V---EDYVSFRLSLRSHPMALLRELV 940


>gi|325978163|ref|YP_004287879.1| DNA polymerase III DnaE [Streptococcus gallolyticus subsp.
            gallolyticus ATCC BAA-2069]
 gi|325178091|emb|CBZ48135.1| DNA polymerase III DnaE [Streptococcus gallolyticus subsp.
            gallolyticus ATCC BAA-2069]
          Length = 1035

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/1026 (28%), Positives = 491/1026 (47%), Gaps = 103/1026 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   +    +     I I D +NL++A  F ++A    +QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLEGYVKAAKSLGYQTIGIMDKDNLYAAFHFIEEAKKQSLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L   +++ L +             + LL     GY+ L+++ S+    D       
Sbjct: 62   VGLELSFAVEETLSLK------------LYLLAQDTTGYKNLMKISSKQMSSD------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L  L +  T   I++                 +  E   L F        Y+ +  + 
Sbjct: 103  IQLDELSDYLTGVAIVVP--------------YFEELETLSLPFD------YYIGVDVNS 142

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                            +E P+       +    + E   +L A+  +  +S KD P  + 
Sbjct: 143  PQ------------KAYEKPIFPLYTVRYFETNEVETLHMLHAIRDN--ISLKDAPPASQ 188

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               L     +   F +  P+ALEN  ++     +        LPRF      + QK  + 
Sbjct: 189  GQNLLACDILTQAFRETFPQALENQEKLVSNIHYEFDTDL-KLPRF------NRQKPAQE 241

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL  +  AGL         AK      Y++RL  EL+VI +M F  YFLIV D +++ + 
Sbjct: 242  ELIERTEAGLR--------AKNLWLPAYQERLKKELSVIHKMGFDDYFLIVWDLLRFGRS 293

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ +YAL IT IDP++ +LLFERFLN +R SMPD DID     R E
Sbjct: 294  RGYYMGMGRGSAAGSLVSYALDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYRSE 353

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             + YV+N+YG    AQI+TF +  AK A+RDV +    P  ++  + K I          
Sbjct: 354  FLHYVRNRYGSLHSAQIVTFSTFGAKQAIRDVFKRFGAPEHELTNITKKISFRDTLT--- 410

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                 +  FR+   +     +   I++++EG  R  S HAAG+V+ D  L++ +P+    
Sbjct: 411  SVYEKNLSFRQIINSKIEYQKAFAIAKRIEGNPRQTSIHAAGVVMSDDNLTEHIPL--KA 468

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D+ +TQ++ + +E  GL+K DFLGL+ LT +Q+  + +A+   V +D+  I  +D +T
Sbjct: 469  GEDMMITQYDAQAVEANGLLKMDFLGLRNLTFVQRMQEKVAKDYGVTIDIKSIDLEDKKT 528

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ +QP   EDI+A  SL RPG  D    +  R+ G+
Sbjct: 529  LELFAAGKTKGIFQFEQAGAINLLKRIQPRQFEDIVATTSLNRPGASDYTENFIKRRFGQ 588

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++  I PL+ P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  ++M K 
Sbjct: 589  EEVDLIDPLVAPILEPTYGIMLYQEQVMQIAQIYAGFTLGKADLLRRAMSKKKADDMQKM 648

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  F+ GA + G     A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 649  ESDFLEGAQRLGRPLETAKDLFSRMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 708

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA     ++    +NT     K+   +IY  L  ++GV   
Sbjct: 709  DVMLNYSSAD------YITDALDSQFKVKKIDINTVPYSDKISAGQIYLGLKNLRGVPRD 762

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
                I+E   ++PF S+EDF +R+      R ++  LV  GA D F  +R +++++LD +
Sbjct: 763  LCYWIIE---NRPFSSVEDFLTRLPENYQKREMITPLVEVGAFDQFDKNRRKIIENLDPL 819

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++FA    ++ +          +++ ++  EQ +LG   S HPL
Sbjct: 820  FIFV--------NELGSLFADTSYSWIET------EDYSNAEKYRLEQSLLGVGISPHPL 865

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   K +             +   +   +  +T+ KG ++ +++ ++  K++
Sbjct: 866  L----EIARQSTKDFTALADLQENTEATILVELNQIRVIRTKTKGEQMAFLSVTDTQKKF 921

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 922  DVTLFP 927


>gi|260432082|ref|ZP_05786053.1| error-prone DNA polymerase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415910|gb|EEX09169.1| error-prone DNA polymerase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 984

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/997 (24%), Positives = 422/997 (42%), Gaps = 70/997 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ-- 68
           +  L + S+++ L GA      +++      PAIAI D N++   +    +A     +  
Sbjct: 2   YAELSITSNFTFLTGASHPEEYMERAVTLGLPAIAIADDNSVAGIVRAHTQAREIARKVR 61

Query: 69  ----------PIIGCQLDIDMQDN-------LKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
                     PI     D   +          ++    +  F   P +  L    +G+  
Sbjct: 62  ERRAWEEHNTPIGPPCPDHIPKPPSFPVHAVPRLIPAARLIFTDAPPVTALPLNRQGWAS 121

Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
           L  L+S   L    K    + LS L E  ++GL +L    +G          +     + 
Sbjct: 122 LCRLLSTGRLR-AAKGDCILHLSDLLEF-SDGLHLLLWPQAG-----RPTGGASGWRTQA 174

Query: 172 LTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
               + F  R+++ +   + G D      +   ++   LP +A+   +          DV
Sbjct: 175 QQLTRRFAGRMHLLMHPRYDGADAAFFQVLETESHHLGLPTIASAAPMMHHGSRRRLADV 234

Query: 231 LMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
           L A+     V    R  +   +  L++ +EM+ IF     A+     ++ + +F L    
Sbjct: 235 LTAIRLRRKVDDLGRHALANGEQRLRSEAEMLRIFKGHEGAVARAYALSEQLTFSLDELR 294

Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              P  +        +     L   A  GL+ R   GA  K       +  L  EL +I 
Sbjct: 295 YEYPSEVSG-----TETPAQRLHRLAHEGLKWRYPAGAPEK------VKAMLAHELTLIG 343

Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
           ++K+  YFL V D +Q+A+   I +  GRGS A SV  Y L +T + P   +++FERF++
Sbjct: 344 KLKYEPYFLTVHDIVQFARSRGI-LCQGRGSAANSVVCYCLGVTSVSPEMGTMVFERFVS 402

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
             R   PD D+DF  +RR+EVI+++  +YG  R     T    + K A+R+VGRA+ +  
Sbjct: 403 EARDEPPDIDVDFEHERREEVIQHIYERYGRHRAGLCATVIHYRGKRAIREVGRAMGLTE 462

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHAST 527
             +  L   +    +         +  R RE  L   D  + + L +  ++ G  RH S 
Sbjct: 463 DTISALSSQLWGFFSASGL-----EAERMREIGLDPEDHRLKQTLTLVHQINGFPRHLSQ 517

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           H  G +I +  L +LVP+      D  V  ++   I+  G++K D L L  LT ++K+ D
Sbjct: 518 HVGGFIITEGRLDELVPIENATMEDRTVICWDKDDIDTLGILKVDVLSLGMLTCIRKAFD 577

Query: 588 FLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            +AQ       L+ +P +D   Y +L    ++G+FQ+ES      L  M+P    D++  
Sbjct: 578 LIAQHHQTSYTLATLPPEDPAVYDMLCRADSVGVFQVESRAQMNFLPRMRPRNFYDLVIE 637

Query: 647 VSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
           V++ RPGPI  D +  Y  R+NG+E++      +  +L +T GV ++QEQ MQIA + +G
Sbjct: 638 VAIIRPGPIQGDMVHPYIRRRNGEEEVSFPSDALGEVLGKTLGVPLFQEQAMQIAIVGAG 697

Query: 705 YSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
           ++  +AD LRR++   K    + + +  F+ G  +NG     A   F  +  F  YGF +
Sbjct: 698 FTPEQADRLRRSLATFKKHGSVSEFRALFLRGMQRNGYDAEFAERCFSQIEGFGSYGFPE 757

Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
           SHAA++A++ Y +AW+K H+P  F  A +  +        +  +DAR+  +Q+ P  +N 
Sbjct: 758 SHAASFALLVYASAWIKCHHPGIFACALLNSQPMGFYAPAQIVRDAREHGVQVRPVCINA 817

Query: 824 PCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
              D  +  +      +      IKG+    A  +  A  +  +  ++D   R     L 
Sbjct: 818 SFWDNVMEPDGHGGLALRLGFRQIKGLSEEDASWLTAARGNG-YHQVDDVWRRA---GLG 873

Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
             V+E L  A A    G +R + L     I           T +   +FA +    +   
Sbjct: 874 PSVIERLAEADAFAACGLTRREALWQAKAI----------ATARPLPLFAQDLEGEALDE 923

Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
                   +   +   +          HP+ + + +L
Sbjct: 924 PAAHLPRMSLGEQVVEDYVATRLSLRAHPVALLRHLL 960


>gi|313890133|ref|ZP_07823768.1| DNA polymerase III, alpha subunit [Streptococcus pseudoporcinus SPIN
            20026]
 gi|313121494|gb|EFR44598.1| DNA polymerase III, alpha subunit [Streptococcus pseudoporcinus SPIN
            20026]
          Length = 1036

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/1026 (29%), Positives = 503/1026 (49%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L   + YS ++  + L++ + +       +I I D + L++A  F  KA  AG+QPI
Sbjct: 2    FVQLDTKTVYSFMDSLIDLDHYISEAKRIGYQSIGIMDKDCLYAAYHFILKAQKAGLQPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  ++  +Q   +             S+ LL     GYQ L++L +   L    + +  
Sbjct: 62   LGLAIEYPIQGKEE-------------SLYLLAKNNLGYQNLLKLST---LRMSAEFTPE 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                +L      GL+++         +                  +L             
Sbjct: 106  HIKDFLD-----GLMVILP------YQPHLHG------------IELGFPYF------TG 136

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             ++  +  Q + L       L+      + S+ + E   VL A+  +  +S+     V  
Sbjct: 137  VFEETKLVQPLPLQ-----NLIPLRTVRYFSDSERETLQVLHAIRDNVTLSETK--VVEA 189

Query: 251  DHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              YLK+  E+   F +L P   ++  ++ +   +    H   LPRF      + Q+  + 
Sbjct: 190  GQYLKDPKEIAQKFEELYPGINDHLADLLKDIRYEFD-HEFKLPRF------NRQRAAKE 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL+     GL+         KG     Y++RL+ EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELKELTEDGLKK--------KGLWQDIYQERLEKELQIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++ +LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVKHNLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             + YV+N+YG +  AQI+TF +  AK A+RDV +   +P  ++  L K I          
Sbjct: 355  FLHYVRNRYGSDHSAQIVTFSTFGAKQAIRDVFKRFGVPEYEISNLSKKIAF---KDTLT 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                 +  FR+   +   + +  EI++++EG  R  S HAAGIV+ D  L+  +P+   +
Sbjct: 412  SIYEKNISFRQTINSRLELQKAFEIAKRIEGNPRQTSIHAAGIVMSDDLLTDHIPLKEGI 471

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              ++ VTQ++   +E  GL+K DFLGL+ LT +QK  + +A+     + +  I  +D +T
Sbjct: 472  --EMMVTQYDAPAVEANGLLKMDFLGLRNLTFVQKMKEKVAKDFGKDIIIEEIDLEDPKT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E SG    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  LELFAKGDTKGIFQFEQSGAISLLKRIKPKRFEEIVATTSLNRPGASDYTNNFIKRRRGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM K 
Sbjct: 590  EKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVFAGFTLGKADLLRRAMSKKNLAEMKKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  F+ GA++ G S+  A  +F  + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  ENDFLEGAARLGRSEETARLLFNRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFF 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M     +      +  DA + + +++P ++N    + K+  N+IY  L  IKG+   
Sbjct: 710  DVIMNYSNSD------YISDALESDFKVVPLTINNIPYNDKIDSNKIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E    +PF S+E F S + +K   + +LE L   G  D F  +R ++L +LD +
Sbjct: 764  LAYWIIE---KRPFSSIESFLSALPTKYQKKDLLEPLFAVGLFDLFESNRRKVLNNLDGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         ++  ++FA    ++SD          ++  +++ E+  +G   S HPL
Sbjct: 821  LIFV--------SELGSLFADSSFSWSD------CDDFSNREKYQLEENYIGIGLSPHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++ +   +   +   +  +T+  G ++ ++T ++  K+ 
Sbjct: 867  L----EIAEKTDQAFTPITKLLKDSEHTILVQIEKVRIIRTKSSGQQMAFLTVTDTKKKI 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTVFP 928


>gi|290580380|ref|YP_003484772.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025]
 gi|254997279|dbj|BAH87880.1| DNA polymerase III alpha chain [Streptococcus mutans NN2025]
          Length = 1034

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1026 (29%), Positives = 496/1026 (48%), Gaps = 104/1026 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L + + K        I I D +NL+ A  F ++A    + PI
Sbjct: 2    FAQLDTKTVYSFMDSLIDLKSYIKKAKEMGYSHIGIMDRDNLYGAFHFIKEAQKEKLVPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +LD+ + ++L              ++  +     GY  L+++ +      Q      
Sbjct: 62   LGLELDLFLSNDL-------------TTVCFIAQNTIGYHNLLKISTAKMTGQQ------ 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               S ++E   +GL ++     G ID+                    F    Y+ +    
Sbjct: 103  -LFSDIEEF-MDGLAIIVPYFEG-IDQMD------------------FPFSFYIGV---- 137

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                       QL +  ++  +  +   +   +D E   +L A+  +  + +   P V+ 
Sbjct: 138  ------RKDTPQLDFKRDI--LPLHTVRYYDNDDTETLQILHAIRDNLPLREV--PPVSK 187

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D YL ++ EM  IF +  P++L N  ++    S+        LPRF         K    
Sbjct: 188  DQYLFSQEEMEQIFEERFPQSLLNLEKLVANVSYQFDTDL-KLPRFSRD------KPAVV 240

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL+  A  GL        I K   + DY++RL  EL VI +M F  YFLIV D +++ + 
Sbjct: 241  ELKELAQKGL--------IEKKLLSDDYQKRLSDELAVIHQMGFDDYFLIVWDLLRFGRS 292

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             +  +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R +
Sbjct: 293  QHYYMGMGRGSAAGSLVAYALDITGIDPVKNDLLFERFLNEERYSMPDIDIDLPDIYRSQ 352

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             + YV+++YG    AQI+TF +  A+ A+RDV +       ++ ++ K I          
Sbjct: 353  FLNYVRDRYGSTHSAQIVTFSTFGARQAIRDVFKRFGATEYELSQITKKISFRDNLT--- 409

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     R  EI++K+EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 410  SVYDKKIAFRQLINSKIEYQRAFEIAKKIEGNPRQTSIHAAGIVMSDDNLTDHIPL--KT 467

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              ++ +TQ++   +E  GL+K DFLGL+ LT +QK  + +AQ     +D+  I  +D ET
Sbjct: 468  GEEMMITQYDAPAVEANGLLKMDFLGLRNLTFIQKMQEKVAQDYGRAIDIRAIDLEDKET 527

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E++G    L+ ++P   E+++A  SL RPG  D    +  RK G+
Sbjct: 528  LALFAAGDTKGIFQFEAAGAINLLKRIKPSRFEEVVATTSLNRPGASDYTENFIRRKYGQ 587

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++  I   I  +LK T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM K 
Sbjct: 588  EEVDLIDSSIASILKSTYGIMLYQEQVMQIAQIFAGFTLGKADLLRRAMSKKNTVEMQKM 647

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ F+ GA + G    +A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 648  EKDFLQGADQLGRDLKVAQDLFARMAKFAGYGFNRSHAYAYSALAFQMAYFKVHYPAVFF 707

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  +A + + ++ P S+NT     K+   +IY  L  IKG+   
Sbjct: 708  DVMLNYSSGD------YLSNALETHFKLGPLSINTIPYSDKISHGQIYLGLKNIKGLNRD 761

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E   ++PF S+EDF  R   K     ++  L+  G  D F  +R +++ +L+++
Sbjct: 762  FAYWIIE---NRPFSSIEDFLIRTPEKYQKTEIITPLIQVGLFDQFDKNRQKIVVNLEHL 818

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++FA     + +           ++ +++ EQ ++G   S HPL
Sbjct: 819  FTFV--------NELGSLFADSSYNWIEA------QDYTNAEKYQLEQDIIGTGVSPHPL 864

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + K   +        + GN   + A + S +  +T+ +G ++ +++ ++  K+ 
Sbjct: 865  ----IEIAKHSSRHLITLTDLVEGNEATILAQIESIRIIRTKSRGEQMAFLSVTDTKKKL 920

Query: 1028 EANFFP 1033
                FP
Sbjct: 921  NITLFP 926


>gi|300087544|ref|YP_003758066.1| DNA polymerase III subunit alpha [Dehalogenimonas
            lykanthroporepellens BL-DC-9]
 gi|299527277|gb|ADJ25745.1| DNA polymerase III, alpha subunit [Dehalogenimonas
            lykanthroporepellens BL-DC-9]
          Length = 1045

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/1048 (26%), Positives = 477/1048 (45%), Gaps = 79/1048 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L  HS YS  +GA SL  ++ +       A+AITD +NL  A+ FS  + +  +  
Sbjct: 2    SYAELHCHSYYSFHDGASSLEELITRSGELGYRALAITDHDNLCGAMRFSHLSRSMNLSG 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ ++                    + LL    EGY+ L  L++  +   + + S 
Sbjct: 62   IIGAEVTVEGG----------------YHLTLLAENQEGYRNLCRLITLGHETGE-RNSP 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            +I  + L      GLI L+G   G +         + A + +  +++ F  D  ++ LQ 
Sbjct: 105  QIPSARLA-AHAAGLIALSGCPRGELSLLATAGCDERARQLVRQYQEWFGSDNYFIELQN 163

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
            +  + D  R  ++V+LA     P+VAT N+ +   E +   D L+AV     +       
Sbjct: 164  NLVFGDAERNRRLVRLAGETGAPVVATGNAHYHLRERHRLQDCLVAVRSCKSLEACHHER 223

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA-PILPRFIEKECDDIQK 305
            R   + +L+  +E+ + F+  PEA+ NTV IARRC F L   +   LP +          
Sbjct: 224  RPNSEFHLRPLAEIEARFAGCPEAVANTVRIARRCEFNLTAQSGYDLPDYPAPAGF---- 279

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E+ L    +     R        G      R+RLD E  ++AR + +G+ L+  D I+
Sbjct: 280  TPESYLEKLCLEAAVRRY-------GSITAAVRERLDQEFRLVARHRLAGFLLLYHDVIR 332

Query: 366  WAKKNNI--------------PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
              ++  +              P G GRGS    +  Y + ++ IDPL++ L  ERFL  D
Sbjct: 333  LGREIMVEQGLTTADVPLEENPPGRGRGSSVSLLIGYLIGLSHIDPLKYGLSLERFLPED 392

Query: 412  RMSM-PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
             +   PD D+DF +  R+E+I     K+G +  A   T  + Q K A+RD+G+ L +P  
Sbjct: 393  ALGCVPDIDLDFPRSIREELILRTHRKWGWKYAALTGTIATYQIKGAVRDLGKVLSLPPE 452

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            +VD+L + +    A  +  + ++  SRFR+   A P    L+ ++ +L+G  ++   H  
Sbjct: 453  EVDQLARYVEWGSAAKLKEK-MSRASRFRDRVDA-PGWRDLIALAAELDGFPKYLGQHPG 510

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G++I   PL+ +VP+ R   +   V Q++   I+ AG +K DFL L  L+ +Q++++ + 
Sbjct: 511  GMIISSVPLTDIVPVQRGAMAGRYVCQWDKDSIDDAGCVKIDFLALGALSQMQEAVELIR 570

Query: 591  QRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            +R    +D+S I F D   Y +L    T+GIFQ+ES+   Q +  ++P  + D+   V  
Sbjct: 571  RRTGRFIDMSRIDFADPAVYDMLCRGDTIGIFQVESAAQMQTITRLKPRNLLDMAHEVGA 630

Query: 650  YRP--GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             RP  G    +  Y  R+ G++ +V  H L    L+ T G++++Q+QV Q+A  ++G S 
Sbjct: 631  VRPGVGVNGGVQEYLARRAGRKPVVYNHSLERRALERTLGIVLFQDQVNQLAIDVAGLSP 690

Query: 708  SEADVLRRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            S AD LRRA  ++  +EM  +    F+SGA++ G+  + A  ++        Y F +SHA
Sbjct: 691  SVADQLRRAFSRRHNQEMLSRYHRMFMSGAAERGVGVSAAEAVWRKFN--GQYMFPESHA 748

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
             A+ V +YQ +W+K +YP+EF  A    +      ++   +DA +  I +  P +N    
Sbjct: 749  FAFGVTAYQASWLKLYYPLEFYVAIFNQQPMGFYNLETLKEDAGRHGIGVKGPDINLSAA 808

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
               + +  I      + G+G + A  I+ A      +  + DF  R     + +    +L
Sbjct: 809  GCTIDEGAIRLGFRQVTGLGQSAAEAIVSARTRGGDYRDVGDFLER---SGVLQETALAL 865

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGA D    +R Q            +W    R     +          D + LE    
Sbjct: 866  AGAGAFDSLESNRRQ-----------VKWEIGLRYRPVNSQLFLPLPVRQDMVELENPGH 914

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                 + + E R+LG + +GH +   +P      +    E  A   G  +  A +V+ +Q
Sbjct: 915  W---EKMQEEYRILGLFPAGHIMAGLRPRFGG-SVSTSREITAMKDGAEVTTAGLVIRRQ 970

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +       ++ ++T  +         FP
Sbjct: 971  RPH----RKVVFITLEDEFGHIPLMVFP 994


>gi|94497867|ref|ZP_01304433.1| DNA polymerase III, alpha subunit [Sphingomonas sp. SKA58]
 gi|94422756|gb|EAT07791.1| DNA polymerase III, alpha subunit [Sphingomonas sp. SKA58]
          Length = 1218

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/1092 (22%), Positives = 447/1092 (40%), Gaps = 102/1092 (9%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-- 65
            +P+F  L   +++S L GA   ++++ +        I I D N +   +        A  
Sbjct: 59   APAFAELVAATNFSFLRGASHASDMVARAMELGLAGIGIADRNTVAGVVRAHVARKKAQE 118

Query: 66   -------------GIQPIIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQR 111
                         G+ P +    +     +L +    +  F    P IV   +T  G+  
Sbjct: 119  RARAALLEAKAQAGLPPDLSADEEAACHIDLHLIVGARLVFADGTPDIVAYPATRRGWGE 178

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
            L +L++   L    K    +    L        LI+L   ++              A++ 
Sbjct: 179  LTKLLTVGNLR-AVKGGCILHYEDLTAYLDDLLLIVLPTSTATEQQVHRNPVDYDFADRP 237

Query: 171  LLTFKKLFG------------------------DRLYVNLQRHR-GYDRYRESQVVQLAY 205
                 +                           +R+++     R G D  R ++  +L+ 
Sbjct: 238  PGELVQHGHLSLVPPPRPADLAALLRRLARLAPERVWLGAPLRRDGRDARRLARFQRLSD 297

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSEMVSIF 264
               +PL+AT ++L+ S       DVL  +   T + +  R      + +L + +E+  ++
Sbjct: 298  RAGVPLLATMDALYASPAQRPLQDVLTCIRAGTTIGKAGRRLEANAERHLHDPAEIARLY 357

Query: 265  SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
               P+A+  T    RR  F L       P     E        +  L    ++    R  
Sbjct: 358  RACPDAVAQTAVFLRRIRFSLDQLRYEYPHEPVPEG----WTAQQWLEELTLSAAHARYG 413

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                         RQ LD E ++IAR +++ YFL V D + +A+   I +  GRGS A S
Sbjct: 414  PHI------PYQVRQLLDEEFSLIARQRYAYYFLTVYDIVAFARTKGI-LCQGRGSAANS 466

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            +  + L +T +DP +  LLF RF++ +R   PD D+DF  +RR+EV++Y+ ++YG  R  
Sbjct: 467  MVCFLLGVTSVDPQKHDLLFSRFVSEERDEPPDIDVDFEHERREEVMQYIYDRYGRHRAG 526

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
               T    ++++A+R+V + L +    V RL   I    A  ++ Q I++        LA
Sbjct: 527  IAATVIHYRSRSAIREVAKVLGLSDDIVTRLSSTIWGSYARDMNEQRISE----AGFDLA 582

Query: 505  DPSVDRLLEISQKLEG--LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
            +P + RL E+  +L      RH S H  G ++    L + VP++    +D    +++   
Sbjct: 583  NPQIVRLRELVGQLLEAPFPRHLSQHVGGFILTQNRLDETVPLHHAAMADRSFIEWDKDD 642

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD--LSLIPFDDHETYHLLTTKGTLGI 620
            I+  GL+K D L L  LT ++K+ D +   G+     +  +  DD   Y +L    ++G+
Sbjct: 643  IDALGLMKVDVLALGMLTCIRKAFDLMRDHGLGDHQLVVDLNADDPAVYDMLCRGDSIGV 702

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-- 676
            FQ+ES      L  ++P  + D+   V++ RPGPI  D +  Y  R+ G EK     P  
Sbjct: 703  FQVESRAQINMLPRLRPRELYDLTVQVAIVRPGPIEGDMVHPYLRRRAGLEKPEFPSPDP 762

Query: 677  -----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKE 730
                  +  +LK+T GV ++QEQ M++A + + ++ S+A+ LRR+M   +    MDK +E
Sbjct: 763  PHNPNELRDLLKQTYGVPLFQEQAMKLAIVAAEFTPSQANQLRRSMATFRHVGGMDKFRE 822

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            + I G  + G  +  A   +  +  F  YGF +SHA ++A + Y +AW+K H P  F  A
Sbjct: 823  KMIGGMVRRGYKRDFAERCYSQIEGFGSYGFPESHALSFARLVYVSAWIKCHQPAVFACA 882

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----------------NR 834
             +  +        +  +DAR+  + I    VN    D  +                    
Sbjct: 883  LLNSQPMGFYAPAQLVRDAREHGVTIHGVDVNMSRWDNHLEPLLRSRRSDRGEGAGRALA 942

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +      + G   + A  ++ A AD   F ++ED   R        R+L     A A   
Sbjct: 943  LRLGFRQVDGFRESWATQLVAARADGGLFTNMEDLARRAGLPARALRLL---ADADACRS 999

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
             G  R   L            +      +  +  A E G   D     +      + +  
Sbjct: 1000 LGQDRRAALWEARRTPSDELPLFAAARQRQGD--ARELGAEPDA----QLPAMPLAEQVT 1053

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +  +      GHP+   +P+    G+    ++ A   G  +R+A +V+ +Q+    KG+
Sbjct: 1054 TDYAMTRLSLKGHPMQFLRPVFAAEGVLSCAQAGAAKNGAKVRVAGVVLVRQRPG--KGN 1111

Query: 1014 RIGWVTFSEPAK 1025
             + ++T  +   
Sbjct: 1112 AV-FITIEDETG 1122


>gi|288905189|ref|YP_003430411.1| DNA polymerase III, subunit alpha [Streptococcus gallolyticus UCN34]
 gi|288731915|emb|CBI13480.1| DNA polymerase III, subunit alpha [Streptococcus gallolyticus UCN34]
          Length = 1035

 Score =  720 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/1026 (28%), Positives = 490/1026 (47%), Gaps = 103/1026 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   +    +     I I D +NL++A  F ++A    +QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLEGYVKAAKSLGYQTIGIMDKDNLYAAFHFIEEAKKQSLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L   +++ L +             + LL     GY+ L+++ S+    D       
Sbjct: 62   VGLELSFAVEETLSLK------------LYLLAQDTTGYKNLMKISSKQMSSD------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L  L +  T   I++                 +  E   L F        Y+ +  + 
Sbjct: 103  IQLDELSDYLTGVAIVVP--------------YFEELETLSLPFD------YYIGVDVNS 142

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                            +E P+       +    + E   +L A+  +  +S KD P  + 
Sbjct: 143  PQ------------KAYEKPIFPLYTVRYFETNEVETLHMLHAIRDN--ISLKDAPPASQ 188

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               L     +   F +  P+ALEN  ++     +        LPRF      + QK  + 
Sbjct: 189  GQNLLACDILTQAFRETFPKALENQEKLVSNIHYEFDTDL-KLPRF------NRQKPAQE 241

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL  +  AGL         AK      Y++RL  EL+VI +M F  YFLIV D +++ + 
Sbjct: 242  ELIERTEAGLR--------AKNLWLPAYQERLKKELSVIHKMGFDDYFLIVWDLLRFGRS 293

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ +YAL IT IDP++ +LLFERFLN +R SMPD DID     R E
Sbjct: 294  RGYYMGMGRGSAAGSLVSYALDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYRSE 353

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             + YV+N+YG    AQI+TF +  AK A+RDV +    P  ++  + K I          
Sbjct: 354  FLHYVRNRYGSLHSAQIVTFSTFGAKQAIRDVFKRFGAPEHELTNITKKISFRDTLT--- 410

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                 +  FR+   +     +   I++++EG  R  S HAAG+V+ D  L++ +P+    
Sbjct: 411  SVYEKNLSFRQIINSKIEYQKAFAIAKRIEGNPRQTSIHAAGVVMSDDNLTEHIPL--KA 468

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D+ +TQ++ + +E  GL+K DFLGL+ LT +Q+  + +A+   V +D+  I  +D +T
Sbjct: 469  GEDMMITQYDAQAVEANGLLKMDFLGLRNLTFVQRMQEKVAKDYGVTIDIKSIDLEDKKT 528

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ +QP   EDI+A  SL RPG  D    +  R+ G+
Sbjct: 529  LELFAAGKTKGIFQFEQAGAINLLKRIQPRQFEDIVATTSLNRPGASDYTENFIKRRFGQ 588

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++  I PL+ P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  ++M K 
Sbjct: 589  EEVDLIDPLVAPILEPTYGIMLYQEQVMQIAQIYAGFTLGKADLLRRAMSKKKADDMQKM 648

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  F+ G+ + G     A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 649  ESDFLEGSQRLGRPLETAKDLFSRMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 708

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA     ++    +NT     K+ D +IY  L  ++GV   
Sbjct: 709  DVMLNYSSAD------YITDALDSQFKVKKIDINTVPYSDKISDGQIYLGLKNLRGVPRD 762

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
                I+E   ++PF S EDF +R+      R ++  LV  GA D F  +R +++++LD +
Sbjct: 763  LCYWIIE---NRPFSSAEDFLTRLPENYQKREMITPLVEVGAFDQFDKNRRKIIENLDPL 819

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++FA    ++ +           ++ ++  EQ +LG   S HPL
Sbjct: 820  LIFV--------NELGSLFADTSYSWIET------EDYPNAEKYRLEQSLLGVGISPHPL 865

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   K +             +   +   +  +T+ KG ++ +++ ++  K++
Sbjct: 866  L----EIARQSTKDFTALADLQENTEATILVELNQIRVIRTKTKGEQMAFLSVTDTQKKF 921

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 922  DVTLFP 927


>gi|225856560|ref|YP_002738071.1| DNA polymerase III DnaE [Streptococcus pneumoniae P1031]
 gi|225724719|gb|ACO20571.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae P1031]
          Length = 1033

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/1023 (28%), Positives = 487/1023 (47%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + +                ++  L  ++ GYQ+L++L +      QG+++  +
Sbjct: 63   GLEMTVFVDE-------------QEVNLRFLSLSSVGYQQLMKLSTA---KMQGEKTWSV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L++I    +I+                               F     + L    G
Sbjct: 107  LSQYLEDIA---VIV-----------------------------PYFDRVESLEL----G 130

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y       LA     P++           D E   VL A+  +  + +   P  +  
Sbjct: 131  CDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSRQ 188

Query: 252  HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                + S +  +F +  P+AL+N  ++    S+ L      LPRF               
Sbjct: 189  DVFISASSLEKLFQECFPQALDNLEKLISGISYDLDTSL-KLPRFNP------------- 234

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 235  -ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294  GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354  IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYKLSAITKKISFRDNLK---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411  AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D ET 
Sbjct: 469  DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  DLFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  +   ++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + +
Sbjct: 589  EVTVLDSALEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMR 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  ASFIQGSIEAGHTAEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA +   ++   S+NT     K+ +  IY  L +IKG+    
Sbjct: 709  VMLNYSNSD------YLIDALEAGFEVASLSINTIPYHDKIANKSIYIGLKSIKGLSKDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E     P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ 
Sbjct: 763  ALWIIEHR---PYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++ +        +  ++F     ++ +              +F  EQ +LG   S HPL 
Sbjct: 820  EFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +    I            +   +   V   +  +T+KG  + ++   +  K+ + 
Sbjct: 866  ----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TLF 924


>gi|322388178|ref|ZP_08061782.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus infantis
            ATCC 700779]
 gi|321140850|gb|EFX36351.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus infantis
            ATCC 700779]
          Length = 1033

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/1024 (29%), Positives = 485/1024 (47%), Gaps = 105/1024 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +         ++ I D +NL+ A  F ++    GIQP++
Sbjct: 3    AQLDTKTVYSFMESMVSIKRYVSLGKKYGYSSLGIMDEDNLYGAYYFIKECQKQGIQPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +  +D                ++  L  +  GYQ L++L S   L   GK+    
Sbjct: 63   GLEMTVHHKD-------------KWINLRFLALSNRGYQNLMKLSS---LKMTGKKEWTD 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S+L++      I +       ID     +                    Y+ +     
Sbjct: 107  FSSYLED------ICVIVPYYPEIDSVDLGHDY------------------YIGVYPDTP 142

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P++          ED EA  +L A+  +  + + D   V   
Sbjct: 143  Q------------SNFSHPILPLYRVNSFESEDLEALQMLKAIKENVTLREVD---VQSQ 187

Query: 252  HYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              L   +E +  F     P AL+N   + +  S+ +      LPRF      + ++    
Sbjct: 188  QGLFLPAERLEQFFLEKFPIALDNLARLVKDTSYEIDSSL-KLPRF------NPERPAVE 240

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ELR +A+ GLE         KG   Q Y+ RL+ EL+VI  M F  YFL+V D +++ + 
Sbjct: 241  ELRERAIKGLEQ--------KGLWNQVYQVRLEEELSVIHDMGFDDYFLVVWDLLRFGRS 292

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS  GS+ AYAL IT IDP+  +L+FERFLN +R +MPD DID     R E
Sbjct: 293  QGYYMGMGRGSAVGSLVAYALDITGIDPVAKNLIFERFLNRERYTMPDIDIDIPDIYRPE 352

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             IRYV+++YG    AQI+T+ +  AK A+RD+ +   +P  ++  + K I +        
Sbjct: 353  FIRYVRDRYGSIHAAQIVTYSTFGAKQAIRDIFKRYGVPEYELTAITKKIGSKDTLTT-- 410

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A   +  FR+   +     +  EI++K+EG  R  S HAAG+VI D+ L+  +P+    
Sbjct: 411  -AYEGNLGFRQLIQSKMEYQKAFEIAKKIEGYPRQTSIHAAGVVISDKNLTDYIPL--KY 467

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT  QK  + L +   + + +  I  +D  T
Sbjct: 468  GEDMLITQYDAHGVEGNGLLKMDFLGLRNLTFAQKMQELLYETQGISLRIEDIDLEDKAT 527

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E  G  + L+ ++P   E+++A  SL RPG  D I  +  RK+GK
Sbjct: 528  LALFAAGKTKGIFQFEQPGAIRLLKRVKPQNFEEVVATTSLNRPGASDYIDNFVARKHGK 587

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EK+  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK   EM + 
Sbjct: 588  EKVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRYAGFSLGKADMLRRAMGKKNAAEMHRM 647

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI GA + G  +  A  +F ++ KFA YGFN+SHA AYA +++Q A+ KTH+P  F 
Sbjct: 648  EESFIQGALEKGHGQKQAQEVFAVMEKFAGYGFNRSHAYAYAALAFQLAYFKTHFPAIFY 707

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA +   ++ P S+NT     K+ D  I+  L +IKG+   
Sbjct: 708  QVMLNYASGD------YILDALEMGFELAPLSINTVPYQDKLADKTIHLGLKSIKGMPRD 761

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E     PF S+EDF +R+        +L  LV  G  D F  +R ++L +L  +
Sbjct: 762  FAYWIIEHR---PFSSVEDFITRLPKNYKKISLLTPLVEVGLFDGFDKNRQKILTNLPTL 818

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              + +        +  ++FA    +++D          ++  +F+ EQ  LG   S HPL
Sbjct: 819  FIFVE--------ELGSLFADSSYSWTDT------EDFSNIEKFQKEQDWLGVGISQHPL 864

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                 +L K  +           G    +   + S +  +T+KG  + ++  ++     E
Sbjct: 865  L----VLAKNPLYPIVSLSELSEGQTATVLVEIQSIRVIRTKKGENMAFLKVTDSKTSLE 920

Query: 1029 ANFF 1032
               F
Sbjct: 921  VTVF 924


>gi|296120119|ref|ZP_06838673.1| error-prone DNA polymerase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967273|gb|EFG80544.1| error-prone DNA polymerase [Corynebacterium ammoniagenes DSM 20306]
          Length = 1052

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/1043 (26%), Positives = 460/1043 (44%), Gaps = 117/1043 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F  L   S YS L GA     I+++       A+AI D +  +  ++F++ A    +  
Sbjct: 51   PFAELHATSCYSFLTGASEPEEIVERAVELGLEAVAIVDRDGFYGLMKFAEAAALQNLPT 110

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + G +L               +       ++ L    EGY+RL  LV++  ++ + K  V
Sbjct: 111  VYGVEL---------------SLGEKPTGLLALARGPEGYRRLSRLVAQARMVTKEKDEV 155

Query: 130  RIC--LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            R     +  +++G E +I+                  + AE+      +     + +   
Sbjct: 156  RYPSRAAIAEQLGDECVIV---------------AGYEWAEEIDALVAEFGAQNVVLEYA 200

Query: 188  RHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                 +     +++ ++   H L  +AT      +  D        A+A    + + +  
Sbjct: 201  ATLSPEDTDHHEILDEIRARHGLRAIATALPAAANRTDARLAAAKRALARRESLEKSEPA 260

Query: 247  RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +      +L++  +M+++  D  E +  TVE+A   +F     AP LP     E  D   
Sbjct: 261  QHPMGAQWLRSGQQMLTLMPDRGEEIAYTVELAHELAFTWDALAPNLPHCDVPEGFD--- 317

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E + LR         R      +     +  +Q+++ EL VI ++ F GYFLIV D + 
Sbjct: 318  -EMSWLRELVRQRAPERYRAHPRSW----EKAQQQIEHELAVIEKLGFPGYFLIVTDIVD 372

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +  ++NI +  GRGS A SV  + L IT+ +P+   LLFERFL+PDR   PD D+D    
Sbjct: 373  FCARSNI-LCQGRGSAANSVVCFVLGITNAEPISAQLLFERFLSPDRDGPPDIDVDIESG 431

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV + YG +R AQ+    + + K ALRD  RAL  P    D   K I   P  
Sbjct: 432  RREEVIQYVYSFYGRDRAAQVANVITYRRKGALRDAARALGYPQGAGDAWSKGIAEPP-- 489

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                                   + + E+++K  G  RH   H+ G+V+ DRP++ +VPM
Sbjct: 490  -----------------------EDVSELAEKFRGQPRHLGIHSGGMVLCDRPIADVVPM 526

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
                  D  V Q++      AGL+KFD LGL  L  +   +D + + RG  ++L  +   
Sbjct: 527  EWARMEDRSVLQWDKDDCAAAGLVKFDLLGLGMLEAIHHMVDLVKETRGKTINLWELDLA 586

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYN 662
            D   Y +L+    +G+FQ+ES      L  ++P    D++  V+L RPGPI       Y 
Sbjct: 587  DPGVYAMLSRADAVGVFQVESRAQLATLPRLKPRRFFDLVVEVALIRPGPIQGGSVHPYL 646

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKI 721
             R+NG+E+I   HP+++  L +T G+ ++QEQ+MQIA   +G+S +EAD LRRAM  K+ 
Sbjct: 647  RRRNGEEEITYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFSGAEADELRRAMGSKRS 706

Query: 722  KEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             + M+  ++RF +G  + N I   +A+ ++  +  FA YGF +SHA ++A + Y +AW K
Sbjct: 707  PQRMEALRQRFFNGLWETNQIDGEVALTLWNKIVAFAAYGFPESHAQSFASLVYFSAWFK 766

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--------- 831
              YP EF    +  +       +   QDAR+  ++I+P  VN    + ++          
Sbjct: 767  CFYPAEFCVGLLRAQPMGFYSPQSLIQDARRHGVRILPVDVNASGTEARIEKHSGKNGDD 826

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            D  I   L  ++G+       I E   D P+  + D   R D    +   LE+L  AGAL
Sbjct: 827  DFAIRIGLNLVEGLS-KVTDRIEE---DAPYKDMADLARRADLTTAH---LEALAKAGAL 879

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D FG SR Q L +       A+     R      +      T ++   L   S+      
Sbjct: 880  DGFGLSRRQALWN-------ARVAATEREGMLPGL------TITEAPALPGMSLM---EL 923

Query: 952  FENEQRVLGFYFSGH---PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
               +    G     H   P+ + +P     G+    E      G+ IR+A +V  +Q+ +
Sbjct: 924  VATDISATGVT---HNLQPMQLIRPP----GVLTAAELKTAEDGSRIRVAGIVTHRQRPQ 976

Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031
            T  G  + +    +         
Sbjct: 977  TASG--VTFFGLEDETGLINVMV 997


>gi|329939186|ref|ZP_08288560.1| DNA polymerase III subunit alpha [Streptomyces griseoaurantiacus
            M045]
 gi|329302071|gb|EGG45964.1| DNA polymerase III subunit alpha [Streptomyces griseoaurantiacus
            M045]
          Length = 1231

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/1063 (26%), Positives = 459/1063 (43%), Gaps = 72/1063 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL   S +SL  GA     + ++       A+A+TD + L  A+ F++    AG++P
Sbjct: 3    AFPHLHTASGFSLRYGASHPERLAERAGERGMDALALTDRDTLAGAVRFTRACVKAGVRP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTP--------FPTVPSIVLLVST-AEGYQRLIELVSRMY 120
            + G  L +      +   + +            + P +  L    A G+  L  +VS  +
Sbjct: 63   LYGVDLAVAPYSPARPGRERRRTPVRGGAFVDESAPRVTFLARDGATGWADLCRIVSAAH 122

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                      + L W +    EGL +L G  S  + RA        A + L  +++ +G 
Sbjct: 123  AGRTPGDGPPL-LPW-EASHGEGLTVLLGPDS-DVGRALAAGRPDRAARLLAPWRERYGA 179

Query: 181  RLYVNLQRHR----GYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             L +    H     G    R + + V  A    +  V +N + +         DVL A  
Sbjct: 180  ALRLEAVWHGRTGTGPGSLRLAARTVGFAAEQGVRPVLSNAARYADPGLGPVADVLDAAR 239

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARRCSFI 284
               V     +   + + +LK+   M      + EA           LE T   A  C   
Sbjct: 240  -RLVPIDPAKELDSGEAWLKDTGAMTEAAERIVEAAGFPRGAAHHLLEQTRATAAECVVD 298

Query: 285  LQVHAPILP-RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLD 342
             +    I    F E              R  A   L  R A G +  G+   + Y +R+ 
Sbjct: 299  PEDDLGIGTVHFPEPHLVGAA-------RRTAQRTLASRAAAGMVRLGHAGRRAYWERMH 351

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             EL++IA   F+ YFL VA  +   +   I V   RGSGAGS+  + L I   DP+   L
Sbjct: 352  QELDIIAHHDFASYFLTVAQVVDDVRGMGIRVA-ARGSGAGSLVNHLLGIAHADPVEHGL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            L ERFL+  R  +PD DID    RR EV R + +++G ERVA +    + + + A+RDVG
Sbjct: 411  LMERFLSKRRPVLPDIDIDVESARRIEVYRAIIDRFGAERVATVAMPETYRVRHAVRDVG 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             AL M  +++DR+ K  P+  A  V   A+ +    R          RL E+ + L+ L 
Sbjct: 471  AALSMDPAEIDRIAKSFPHIRARDVRA-ALDELPELRALAGERERYGRLWELVEALDALP 529

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R  + H  G+++ D  L    P+       LP++QF+   +E+ GL+K D LG++  + +
Sbjct: 530  RGIAMHPCGVLLSDASLRDRTPVVPTSGEGLPMSQFDKDDVEELGLLKLDVLGVRMQSAM 589

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +    ++DL  +P  D  TY L+ +  TLG FQ+ES G R  +  +QP    
Sbjct: 590  AHAVAEVERTSGERIDLDAVPPGDPATYGLIRSAETLGCFQIESPGQRDLVGRLQPATFH 649

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            D++  +SL+RPGP+  D +  +   ++G+  +   HP ++  LKET GV+++ EQ++ I 
Sbjct: 650  DLVVDISLFRPGPVAADMVRPFIEARHGRAPVRYPHPDLEGPLKETYGVVVFHEQIIHIV 709

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
              L+G  L EAD +RR +     E   + +  F   A+  G         +E++  F  Y
Sbjct: 710  HTLTGCGLDEADRVRRGLS--DPEAQGRIRVWFAQQAAARGYGAETIARTWEIVEAFGSY 767

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+  + ++P 
Sbjct: 768  GFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRGVPVLPL 826

Query: 820  SVNTPCVDFKV----------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
             VN   V  ++          G   +  +L+ + G+    A  I    A +P+ SL DF 
Sbjct: 827  DVNRSGVAHRIELVSEGEGRAGAWGLRLALSDVHGISEAEAARIA---AGQPYASLLDFW 883

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             R    + +R V   L   GALD FG +R  L   L  + +      +        +   
Sbjct: 884  ERA---RPSRPVAGRLAQVGALDAFGANRRDLQLHLTELHR----GARGGGGGQLPLAG- 935

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
              G  +    L   S E    R   E  VL    S H +D ++  L ++ +         
Sbjct: 936  --GRRTASAGLPDLSEE---ERLSAELGVLSMDASRHLMDDHRAFLDELRVLSARRLREA 990

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              G  + +A    + Q    R G R+ + T  +     +  FF
Sbjct: 991  RHGETVLVAGAKAATQTPPIRSGRRVIFTTLDDGTGLVDLAFF 1033


>gi|149191860|ref|ZP_01870095.1| putative DNA polymerase III alpha chain [Vibrio shilonii AK1]
 gi|148834295|gb|EDL51297.1| putative DNA polymerase III alpha chain [Vibrio shilonii AK1]
          Length = 1023

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/1036 (24%), Positives = 439/1036 (42%), Gaps = 84/1036 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S L GA     ++ +    Q  AIAITD  ++  A+         G+   
Sbjct: 3    YAELFCQSNFSFLTGASHAEELVLQAEFLQYSAIAITDECSIAGAVRAHTAIKQHGLSLK 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
                    + D                  +LL  T E Y  L  +++      + K   +
Sbjct: 63   QIVGSMFWLNDE--------------CQFILLSPTREAYAELCRIITNARRRCE-KGDYQ 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    +  +    ++ L  G    +             +      +    RL++ LQRH 
Sbjct: 108  LSEWDIMSLRHCLILWLPTGRESDV-------------RWGRWLVQYHHQRLWIGLQRHL 154

Query: 191  GYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRV 248
              + +R  Q  + L+   +LP+ A    L  +         L A+  +T + +      V
Sbjct: 155  TSNEHRYIQHCETLSVDLQLPITACGGVLMHTATRLPLQHTLTAIKLNTSIEKVCSHLLV 214

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +  L+ ++++  ++    E L  +V IA  C F L       P     E     K   
Sbjct: 215  NTERSLRPKTKLEKLYR--SEWLNESVYIASLCEFKLSKLRYEYP----SELIPNGKTPM 268

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     G   R  +G  +         Q ++ EL +I  + +  +FL + D + +AK
Sbjct: 269  GYLRELVERGKAQRFPEGLPSH------VEQTINKELALIEELDYPFFFLTIHDIVMFAK 322

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I    GRGS A S+  Y L IT +DP + S+LFERF++ +R   PD D+DF  +RR+
Sbjct: 323  QQGILY-QGRGSAANSIVCYCLEITAVDPRQISVLFERFISKERNEPPDIDVDFEHERRE 381

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  +Q+D   K I N       
Sbjct: 382  EVIQYIYQKYGRERAALAATVISYRFKSAVRDVGKALGVSDTQLDYFIKNI-NRRDRSQG 440

Query: 489  LQAIADDSRFREARLADPSVD--RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             QA     +  E  L   S+   + +E+  ++ G  RH S H  G VI   PL +LVP+ 
Sbjct: 441  WQA-----QLVELGLKPDSLKGQQFIELVNEITGFPRHLSQHVGGFVISSGPLYELVPVE 495

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVDLSLIPF 603
                ++  V Q++   +E  GL+K D L L  LT ++K    + +   R + +       
Sbjct: 496  NAAMAERTVIQWDKDDLESLGLLKVDVLALGMLTAIRKCFQLINKHYGRTLTIADITRRQ 555

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            DD   Y ++    T+G+FQ+ES      L  ++P    D++  +++ RPGPI  D +  +
Sbjct: 556  DDPNVYAMIQRADTIGVFQIESRAQMSMLPRLKPATYYDLVIQIAIVRPGPIQGDMVHPF 615

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R+NG+E I      ++ +L  T GV I+QEQV+++A + +G++  EAD LRRAM   K
Sbjct: 616  LKRRNGEEAISYPSKEVESVLSRTLGVPIFQEQVIKLAMVAAGFTGGEADQLRRAMAAWK 675

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               ++ K + + I G    G     A  +FE +  F +YGF +SH+A++AV++Y +AW+K
Sbjct: 676  KNGDLFKFRSKLIQGMQAKGYETEFAERLFEQICGFGEYGFPESHSASFAVLAYCSAWLK 735

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF----KVGDNRIY 836
             +YP  F  A +           +  QDA++ ++ I P  VN                + 
Sbjct: 736  HYYPDAFYTALLNSLPMGFYSSSQLLQDAKRHHVSIAPVCVNYSQYHHYLRSTPQGLVLQ 795

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
                 + G+  ++ + +++    + F +     +++    LNRR LE L  A AL     
Sbjct: 796  LGFRQVNGLSESSMQRLLQHRPREGFTT----ATQIKQLGLNRRELEILASANALKAISG 851

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R     ++ +  +     +  +++  ++   H+     D   LE FS  N         
Sbjct: 852  HRYATRWAMMDNLQDLPLFKAEKSD--DSSLPHQPSPIEDM--LEDFSAMN--------- 898

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
                   + HP+ +     +        +       + + +   V  KQ   T  G  + 
Sbjct: 899  ----VSLNQHPITLLDQAGKLGRFTRMRDLTLKPHKSLVTVVGTVTGKQSPGTAAG--VT 952

Query: 1017 WVTFSEPAKEYEANFF 1032
            + T  +         +
Sbjct: 953  FFTLEDDTGNINVVVW 968


>gi|221640619|ref|YP_002526881.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides KD131]
 gi|221161400|gb|ACM02380.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides KD131]
          Length = 928

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/984 (25%), Positives = 426/984 (43%), Gaps = 75/984 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FV L   S+++ L GA     ++ + A+   PA+AI D N++   +    +A       
Sbjct: 2   PFVELSATSNFTFLTGASHPEELMRRAASLGLPALAIADENSVAGIVRAYGEAKE----- 56

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
                +  +     ++    +       S+ +L      + RL  L++        K S 
Sbjct: 57  -----IARETGSAPRLIPAARIVVREGMSVTVLPRDRAAWGRLCRLLTLGRRA-APKGSC 110

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            +  + L        ++L   +                             R+ + L  H
Sbjct: 111 DLGFADLLAHVEGQEMLLHPPARSSGGWQTL----------AARLAAACPGRVALILAPH 160

Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             G DR R  +   LA    +P VA+   +          DVL A+     V +  R  +
Sbjct: 161 YAGQDRVRFERQALLAARLGIPTVASGLPILHHGARRRLADVLTAIRLGCRVDELGRRAL 220

Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              +  L++ +EM+ ++    EA+  + EIA R  F L       P  I +      +  
Sbjct: 221 VNGEQRLRSEAEMLRLYPGHEEAVFRSAEIAGRLDFCLSELRYEYPSEISR-----GESP 275

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + L      GL  R   G   K         +   EL +I ++ +  YFL V D +++A
Sbjct: 276 ADRLARLTREGLVWRFPAGVPEK------IAAQARHELELIGKLGYEPYFLTVNDIVRFA 329

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           +   I +  GRGS A S+  YAL +T +DP   +++FERF++  R   PD D+DF  +RR
Sbjct: 330 RDRGI-LCQGRGSAANSIVCYALGVTSVDPEVGTMVFERFVSEARNEPPDIDVDFEHERR 388

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           +EVI+++ ++YG +R     T    + K A+R+VGRA+ +    +  +   I        
Sbjct: 389 EEVIQHIYSRYGRDRAGLCATVIHYRGKRAVREVGRAMGLSEDTLTAMASQIWGWGGP-- 446

Query: 488 SLQAIADDSRFREARLADPSVDRLL---EISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                  + R RE  L DP+  RL    ++  +++G  RH S H  G VI +  L +LVP
Sbjct: 447 ---GALTERRLREIGL-DPNDRRLWLALQLIDEIQGFPRHLSQHVGGFVITEGRLDELVP 502

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPF 603
           +         V  ++   I+  G++K D L L  LT ++K+ D +         L+ +P 
Sbjct: 503 IENAAMEGRTVICWDKDDIDMLGILKVDVLALGMLTCIRKAFDLIESHHHTSYTLATLPR 562

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
           DD +TY +L    +LG+FQ+ES      L  M+P C  D++  V++ RPGPI  D +  Y
Sbjct: 563 DDSQTYDMLCRADSLGVFQVESRAQMNFLPRMRPRCFYDLVVQVAIIRPGPIQGDMVHPY 622

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
             R+NG+E        +  +L +T GV ++QEQ MQIA + + +S  EAD LRRA+   K
Sbjct: 623 IRRRNGREDPHLPSDALGKVLGKTLGVPLFQEQAMQIAIIGANFSPEEADRLRRALATFK 682

Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               + + KERF++G   NG  K  A   F  +  F  YGF +SHAA++A++ Y +AW+K
Sbjct: 683 KHGNVTELKERFMNGMLANGYDKDFATRCFSQIEGFGSYGFPESHAASFALLVYASAWIK 742

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI----- 835
            H+P  F  A +  +        +  +DAR   + ++PP +N    D  +  +R      
Sbjct: 743 CHHPGIFACALLNAQPMGFYAPAQIVRDARAHGVIVLPPCINASLWDNVMERDREGRLAL 802

Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                 IKGV    A+ I+ A  +  + ++ED   R     +    +  L  A      G
Sbjct: 803 RLGFRQIKGVAEEEAQWIVAARGNG-YRAVEDIWRRA---GVPPATVTRLAEADCFAALG 858

Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRT-NKHENIFAHE---KGTFSDKITLEKFSVENSSVR 951
            +R +           AQW  +  + ++   +FA +   +G    ++ L + ++    V 
Sbjct: 859 LTRRE-----------AQWQARALSGDRPLPLFAGDMDGEGIVEPEVVLREMTLGEEVV- 906

Query: 952 FENEQRVLGFYFSGHPLDVYKPIL 975
              +          HP+ + + ++
Sbjct: 907 --EDYVSFRLSLRSHPMALLRELV 928


>gi|160899695|ref|YP_001565277.1| DNA polymerase III subunit alpha [Delftia acidovorans SPH-1]
 gi|160365279|gb|ABX36892.1| DNA polymerase III, alpha subunit [Delftia acidovorans SPH-1]
          Length = 1128

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/1076 (23%), Positives = 439/1076 (40%), Gaps = 115/1076 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++ +  A    A+A+TD  ++  A+   + A    + 
Sbjct: 38   PGYAELHCLSNFSFLRGASSPAQLVQRAKALGYQALALTDECSVAGAVRAFEAARDCEMA 97

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQ 127
             I G +                        +V L     G+  L E +S      ++G+ 
Sbjct: 98   LIHGSEFAW-----------------GSLRVVALARDLNGWGNLCEFISAARARAEKGRY 140

Query: 128  SVRICLSW--LQEIGTEGLIMLTGGSSGPIDRAF--FFNSSQVAEKRLLTFKKLFGDRLY 183
             V     W  L+E          G     + +             + +       G   +
Sbjct: 141  LVDADSPWHLLRE----------GCECIVVPQRAQLLPGDVPAMAEAVQAAVAQLGPGCW 190

Query: 184  VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + ++     D       +  +A    L  VA  +    +       D++ A+     V++
Sbjct: 191  LGVELLLAPDDSLWLQSLQDVAGLLGLSCVACGDVHMHARSRKPLQDLVTALRLGCTVAE 250

Query: 243  KD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                     + +L++R  +  I+      L+ T++IA RC F L   +   P+       
Sbjct: 251  CGFELHPNAERHLRSRLRLGGIYPRA--MLDATLQIAARCDFKLSEISYHYPQESVLPGM 308

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D ++     L      G   R  +G   K       R++L  EL +I+   +  YFL V 
Sbjct: 309  DARQT----LAWHTWQGAAGRYPEGIPKK------VRKQLHNELKLISMCGYEMYFLTVH 358

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +++A+  +I +  GRGS A SV  + L IT +DP   +LL  RF++ +R   PD D+D
Sbjct: 359  DIVRFARSQDI-LCQGRGSAANSVVCFCLGITAVDPTLQTLLIARFISRERSEPPDIDVD 417

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F   RR+ VI+Y+  KYG +R A        + + ALRD G+AL +  + +D + +   +
Sbjct: 418  FEHARRETVIQYIYEKYGRDRAALTAVVSCWRTRGALRDAGKALGVDAALIDAMARQ--H 475

Query: 482  DPAHPVSLQAIADDSRFRE------------------------ARLADPSVDRLLEISQK 517
                    QA   +    +                         +L+       LE++ +
Sbjct: 476  HWFSDAEDQAAEPEPEPDDPALGWVRSKLLRLARLRERLGDDCPQLSPQRARLWLELALQ 535

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            L    RH S H  G V+ D PL++LVP+         V Q++   ++   L+K D L L 
Sbjct: 536  LRDSPRHLSQHVGGFVLTDGPLTRLVPVEPAAMEGRSVIQWDKDDLDTMNLLKVDVLALG 595

Query: 578  TLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT+L+ SL    A RG + +L+ IP +D  TY ++    T+G FQ+ES      L  ++
Sbjct: 596  MLTVLRGSLKARAALRGPRWELADIPKEDAATYDMICRADTVGTFQIESRAQMSMLPRLR 655

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYN------NRKNGKEKIVSIHPLIDPMLKETQGVII 690
            P    D++  V++ RPGPI   +V+        R+ G E ++   P ++  LK T GV I
Sbjct: 656  PRVFYDLVVEVAIVRPGPIQGGMVHPYLQARERRRQGGELVLE-KPALEKALKRTLGVPI 714

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +QEQVMQIA + + +S  +AD LRR+M   + K  + + +   I G   NG S   A  I
Sbjct: 715  FQEQVMQIAMIAADFSAGDADELRRSMAAWRRKGGVHRFERPLIDGMLANGYSAEFAQAI 774

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            F  +  F +YGF +SHA ++A+++Y +AW+K H P  FL A +  +        +  QDA
Sbjct: 775  FRQMLGFGEYGFPESHAYSFAMLAYASAWLKRHEPACFLMALLNAQPMGFYTPSQLIQDA 834

Query: 810  RQFNIQIMPPSVNTPCVDFKVG------------DNRIYYSLAAIKGVGTTTARHIMEAS 857
            R+  ++++P  V     D  +                +   L  +  +  T+   + +  
Sbjct: 835  RRHGVRVLPVDVRHSDWDCTLEAPHERIAGVELPQPAVRLGLCMVAQLPKTSGERVAQVR 894

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
            A  PF S ED   R   ++   + L +      L   G+ R Q+  +             
Sbjct: 895  AQAPFRSTEDLALRARLQRAELQALAAADALQGLS--GHRRQQMWDA------------- 939

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                    +FA         + L         +    +    G     HPL + +  LR+
Sbjct: 940  AALQVQPPLFAGVP-VHEAPVQLAAAPEGEEIL---FDYAATGLSLRRHPLALLRDRLRR 995

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G++   E   T+ G  +R   +V  +Q+  T KG+   ++T  +         +P
Sbjct: 996  HGLRTALELRDTLAGMRVRACGIVTVRQRPPTAKGTL--FITLEDETGTVNLVVWP 1049


>gi|154247396|ref|YP_001418354.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2]
 gi|154161481|gb|ABS68697.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2]
          Length = 1116

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/1065 (22%), Positives = 432/1065 (40%), Gaps = 77/1065 (7%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
              +  +P++  L   S +S L GA +   +++         + I D N +   +      
Sbjct: 7    NAIAPAPAYAELCAASHFSFLRGASAPARLVEVAVRLGHCGLGIADRNTVAGVVRAYSAL 66

Query: 63   CA---------AGIQPIIGCQLDIDMQDNLKMTNQGKTPF-----PTVPSIVLLVSTAEG 108
                       AG +     +             +  T          P I+   +   G
Sbjct: 67   EELRRLDADENAGDEDDAETRAAKSRLAARARAFRLATGTRLVFCDNTPDILAYPADRAG 126

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
            + RL  L++      + K    + LS L       L++L  G             ++   
Sbjct: 127  WGRLCRLLTTGNRRAK-KGECHLALSDLLADPGGLLLVLMPGPG-------MDGLAERLS 178

Query: 169  KRLLTFKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              L   ++     +++       G DR R + +  LA  H +PL+A N+ L  +  + + 
Sbjct: 179  PALARLEEAAPGAVWLAADMPFAGEDRRRLAALKALAGAHGVPLLAVNDVLCATPRERDL 238

Query: 228  HDVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
             D+L  +     +++  R  +   + +LK  +E+  +F D PEA+  +  +  R  F + 
Sbjct: 239  QDILTCIREGIPIAEAGRRLQANAERHLKPAAEIARLFRDAPEAIAESGHLLARVEFSVG 298

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                  PR             +  L         VR   G   K        + L  EL 
Sbjct: 299  ELKYEYPREPVPPG----WTPQAWLEELTWRCARVRYPNGLTPK------VERLLRDELA 348

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            +I++++++ YFL + D +++A+   I +  GRGS A S   Y L IT +DP    LLF R
Sbjct: 349  LISQLEYAPYFLTIHDIVRFAESRGI-LCQGRGSAANSAVCYVLGITAVDPADNDLLFAR 407

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            F++ +R   PD D+DF  +RR+EVI+++  KYG  R   + T    + ++A+RDVG+AL 
Sbjct: 408  FISTERREPPDIDVDFEHERREEVIQHIYEKYGRHRAGIVATVIHYRPRSAIRDVGKALG 467

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRH 524
            +      RL           +       DS+ REA L  A+P + R ++++++L G  RH
Sbjct: 468  LTEDITARLASTQWGSWGRDI------ADSQIREAGLDPANPLIRRAVDLARRLMGAPRH 521

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             S H  G V+    L  +VP+     +D    +++   I+   L+K D L L  LT ++K
Sbjct: 522  LSQHVGGFVLARDRLDDMVPIGNAAMADRTFIEWDKDDIDALRLMKVDVLALGMLTCIRK 581

Query: 585  SLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +LD +     +   L+ +P    + Y +L    ++G+FQ+ES      L  ++P    D+
Sbjct: 582  ALDLMRAHEGINFALADVPGAQEDVYAMLARGDSIGVFQVESRAQINMLPRLRPREFYDL 641

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQE 693
            +  V++ RPGPI  D +  Y  R+NG+EK+    P         +  +L++T GV ++QE
Sbjct: 642  VIQVAIVRPGPIQGDMVHPYLRRRNGQEKVDYPSPAPEHGPSDELRQVLEKTLGVPLFQE 701

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            Q M++A + + +S +EA+ LRRAM   +    + + +   +      G  +  A   FE 
Sbjct: 702  QAMKLAMVAARFSDAEANRLRRAMATFRNLGTIHEFEALMVERMVARGYERAFAQRCFEQ 761

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  F  YGF +SHAA++A + Y ++++K  +P  F  A +  +        +  +DAR+ 
Sbjct: 762  IKGFGSYGFPESHAASFAKLVYISSYIKCRHPAVFACALLNAQPMGFYAPAQIVRDAREH 821

Query: 813  NIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
            ++++    +N    D  +     G   +      + G        ++ A     F  +E 
Sbjct: 822  SVEVRAIDINHSHHDNTLERRADGALALRLGFRQVDGFHEAWGERLVAARGTG-FSGVEV 880

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
               R        ++L     A      G  R   L     +            +    +F
Sbjct: 881  LARRARLPTRAVKLL---ADADGFRSLGLDRRAALWHARRLPD----------DDALPLF 927

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
            A        +    +      S     + + +     GHP+   +   R   I    E+ 
Sbjct: 928  AAADARELGQEEEVRLPDMARSEHIVADYQTVRLSLKGHPMGELRDHFRAARILSCAETT 987

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A   G   R A +V+ +Q+     G  I ++T  +         +
Sbjct: 988  ALKDGAFARTAGVVLVRQRPG--NGKAI-FITLEDETGITNVVLW 1029


>gi|298528510|ref|ZP_07015914.1| DNA polymerase III, alpha subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512162|gb|EFI36064.1| DNA polymerase III, alpha subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 775

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/786 (36%), Positives = 430/786 (54%), Gaps = 24/786 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            F HL  H+ YSL EG + + ++  +    + PA++ITD+ NLF A++   KA   GI+P
Sbjct: 3   DFCHLHCHTEYSLFEGCIRIEDLCSRAVEYKMPAVSITDSGNLFGAMKLYLKAREYGIKP 62

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIGC++++  +       +          +VLL     GY  L+ LVS  ++        
Sbjct: 63  IIGCEVNLSPE-------KITDRDSFNYHLVLLAMDLHGYHNLVRLVSAGWMQG-FYYKP 114

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           R+    LQ   + GLI L+    G +           A +    +  +F DR Y+ L+  
Sbjct: 115 RVDKDMLQTY-SNGLIALSACMEGEVQYLLRTKGFDHALEAARQYASIFPDRFYLELEAS 173

Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              D+     ++++++    LP+VATN+  +L+ +D EA+  L  +  +  +   +    
Sbjct: 174 GLKDQAEVNGRLMEMSEKTGLPMVATNDCRYLAPQDAEAYAALRCIQKNERLDHHNLN-- 231

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
           + + Y K+  EM   FS  P ALEN  +I  +C   L+     LP++     D + K   
Sbjct: 232 SRELYFKSPEEMEKEFSHCPTALENVQKIIEQCGLDLEYPKRHLPKYTPSAEDTLDK--- 288

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            EL   +  GLE +LA   +       +Y  RLD EL VI     S YFL+V D++ WAK
Sbjct: 289 -ELVALSEKGLEEKLAN--LPYEVDRDEYFTRLDKELKVICEQGESWYFLVVHDYVSWAK 345

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              I VGPGRG   GS+TAYAL IT +DP+R  L FE+F N  +  + D D+DFC +RR+
Sbjct: 346 SRGIVVGPGRGFAPGSMTAYALGITGVDPIRHRLYFEKFFN-TKTGLKDIDVDFCHERRE 404

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
           EV  Y++ KYG         F + +A+  LRDVG+ +     QV+++  LIP      VS
Sbjct: 405 EVFEYLREKYGQANAVYPSVFVASKARVVLRDVGQVMGFSLDQVEQITSLIPEKIGITVS 464

Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            +A+  +   R     +  + R L+I ++L+ L RH S HAAGIVI +  L   +P+Y D
Sbjct: 465 -KALEMEPALRNLMNDNEEMQRYLDICKRLDRLVRHVSIHAAGIVISNEKLQSYLPLYSD 523

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
                 V+Q++   + + G IKFDFLGLK L+L+ ++L  +   +    D+  +P DD  
Sbjct: 524 QNK-AIVSQYDWDDLRRLGFIKFDFLGLKYLSLISRTLALIKVNKKQVPDMENLPLDDTL 582

Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRK 665
           T+ LL    T G+FQLESSGMR  L  + P C EDIIAL ++YRP  + N +   +  RK
Sbjct: 583 TFDLLDGGLTEGVFQLESSGMRNTLMDLTPTCFEDIIALHAIYRPAFLQNGIDKDFIKRK 642

Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
           +G   +   HP ++P+L ET G+IIYQEQ+M+IAQ L+GYSL E D LRR +GKK    M
Sbjct: 643 HGLVSVEYPHPDLEPILNETHGLIIYQEQLMEIAQTLAGYSLEEGDTLRRVLGKKEATTM 702

Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +Q+E+FI  A   G+ +  A ++FEL+ +FA Y F+KSH+ AY++I+YQTA++K HYP 
Sbjct: 703 AEQREKFIQKARDKGLDQLTAKHVFELMERFASYTFSKSHSVAYSMIAYQTAYLKAHYPE 762

Query: 786 EFLAAS 791
           EF  A 
Sbjct: 763 EFQRAL 768


>gi|225870382|ref|YP_002746329.1| DNA polymerase III alpha subunit [Streptococcus equi subsp. equi
            4047]
 gi|225699786|emb|CAW93588.1| DNA polymerase III alpha subunit [Streptococcus equi subsp. equi
            4047]
          Length = 1036

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/1026 (29%), Positives = 488/1026 (47%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L++   +       AI I D +NL+ A  F +     G+QPI
Sbjct: 2    FAQLDTKTVYSFMDSLIDLDHYFKQAKRLGYQAIGIMDQDNLYGAYHFIKGCQRHGLQPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ I +++                ++ L+     GYQ+L++L +        K S  
Sbjct: 62   LGLEVAITVKE-------------QALTLKLVAKNDTGYQQLLKLSTE-------KMSGD 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L  L +   EG+ ++   S    D                    L  D          
Sbjct: 102  LDLDTLVQY-LEGIAVIVPFSQSLRDLG------------------LPFDYFI------- 135

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D   +   +         L+      +    + E   +L A+  +  +S  D   V  
Sbjct: 136  GIDEASDLSKIDSTER----LIPLRTVRYFDNAETETLQMLHAIRDN--ISLADTALVAK 189

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D +L    EM +IF +  PEAL N V +    ++        LPRF      +  K  + 
Sbjct: 190  DQFLAPCQEMTAIFQEKCPEALVNLVNLTASIAYHFDTDL-KLPRF------NRDKPAKE 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ELR    +GL          K    + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELRELTESGLRE--------KQLWKEPYQFRLAEELAIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AY+L IT IDP++ +LLFERFLN +R SMPD DID     R E
Sbjct: 295  RGYYMGMGRGSAAGSLVAYSLRITGIDPVKNNLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             + YV+++YG E  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLHYVRDRYGSEHSAQIVTFSTFGPKQAVRDVFKRFGVPEYELTSLTKKIGF---KDTLS 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                 +  FR+   +     +  EI++++EG  R  S HAAGIV+ D  L+  +P+ +  
Sbjct: 412  TVYEKNIAFRQTINSRLEFQKAFEIAKRIEGNPRQTSIHAAGIVMSDDHLTNHIPLKK-- 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHET 608
              D+ VTQ++   +E  GL+K DFLGL+ LTL+QK  +  +   G+ +D+  I  +D ET
Sbjct: 470  GEDMMVTQYDASAVEANGLLKMDFLGLRNLTLVQKMQEKVVNDYGLSIDIEAINLEDPET 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E  G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  IALFARGDTKGIFQFEQHGAISLLKRIKPTSFEEIVATTSLNRPGASDYTQNFIKRRQGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E I  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM + 
Sbjct: 590  ENIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLVEMQRM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F++GA   G S+  A  +F  + KFA YGFN+SHA AYA +++Q A+ K HYP  F 
Sbjct: 650  QEDFLTGARALGRSEETARLLFARMEKFAGYGFNRSHAFAYAALAFQLAYFKAHYPEVFF 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M     +      +  DA  F  +    ++NT   + K+  ++IY  L  IKG+   
Sbjct: 710  DVMMNYSSSD------YITDALDFGFEAAQVTINTIPFNDKIERHKIYMGLKNIKGLPRE 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             +  I+E   ++PF S+E F   +  K      LE L+  G  D F  +R +++ +L+ +
Sbjct: 764  FSYWIIE---NRPFTSVESFLCSIPEKYQKTSFLEPLIKIGLFDGFEKNRQKIINNLEGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++FA    ++       +    +++ ++  EQ +LG   S HPL
Sbjct: 821  LTFV--------NELGSLFADSSFSW------VETEDYSAAEKYYFEQDLLGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +            ++     L   + + +  +T+  G ++ +++ ++  ++ 
Sbjct: 867  L----AVAEKSTVAVTPITKLVKDTEATLLVQIDAIRVIRTKSSGQQMAFLSVTDTKQKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|326404073|ref|YP_004284155.1| error-prone DNA polymerase [Acidiphilium multivorum AIU301]
 gi|325050935|dbj|BAJ81273.1| error-prone DNA polymerase [Acidiphilium multivorum AIU301]
          Length = 1037

 Score =  717 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/1019 (25%), Positives = 425/1019 (41%), Gaps = 79/1019 (7%)

Query: 20   YSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDM 79
            +S LEGA     ++D+       A+ I D N +   +     A   G++ ++G       
Sbjct: 13   FSFLEGASHPQELVDQALYLGHAALGIADRNTVAGVVRAHVAAKQGGLRLLVGS------ 66

Query: 80   QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI 139
                      +  F   P ++      EG+ RL  L+S        K   R+ L  L++ 
Sbjct: 67   ----------RLGFEDGPDVIAYPRDREGWGRLCRLLSLGKGR-AAKGGCRLRLDDLED- 114

Query: 140  GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ 199
               G+ ++      P            A    L     FG  +++   R    D     +
Sbjct: 115  HAAGMALIVMPPPWP----------DAAFAASLDRISGFGAPVWLGAARRYAPDDAARLE 164

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRS 258
             +         LVA N+ L+ +       DV+  + H   +++   R     + YLK   
Sbjct: 165  ALAALAGRRRRLVAVNDVLYHAPSRRPLQDVMRCIRHGCTIAEAGLRLEPHGERYLKPAD 224

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
            EM  +F     A+    EI     F L       P           +  +  L + A AG
Sbjct: 225  EMARLFRGHEAAIAAQAEILDAVGFTLGDIRYEYPDEPVPPG----RTPDAHLADLAWAG 280

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
              +R   G              +  EL++IAR+ ++ YFL V D + +A++  I +  GR
Sbjct: 281  AAIRYPGGV------PVAIAATIRRELDLIARLGYARYFLTVNDIVGFARRQGI-LCQGR 333

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GS A S   YAL IT +DP    LLFERF++ +R   PD D+DF  +RR+EVI+Y+  +Y
Sbjct: 334  GSAANSAVCYALGITAVDPAEIDLLFERFVSAERGEPPDIDVDFEHERREEVIQYIYGRY 393

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G  R A   T    ++++A+RDVG+AL +  + ++ L     N         A+  D R 
Sbjct: 394  GRARAAIAATVIHYRSRSAIRDVGKALGLDAATIETLAAQSWNPG------DALWSDPRL 447

Query: 499  REARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            REA L  A P + R + ++++L  L RH S H  G V+    L ++VP+           
Sbjct: 448  REAGLDPAAPDLRRAIGLARELVDLPRHLSQHVGGFVLTRTRLDEIVPVGPAAMPGRSFI 507

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
            +++   I+   L+K D L L  LT ++K    L       DL+ +P +D   Y +L+   
Sbjct: 508  EWDKDDIDALKLMKVDVLALGMLTCIRKCFAMLG----IADLADVPREDPRVYDMLSRGD 563

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSI 674
             LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  R+NG E     
Sbjct: 564  ALGVFQVESRAQMNMLPRLRPRAFYDLVIEVAIVRPGPIQGDMVHPYLRRRNGLEAPDMP 623

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFI 733
             P +  +L +T GV ++QEQ M+IA   +G++  EA+ LRRAM   +    +++   R I
Sbjct: 624  SPALRSVLGKTLGVPLFQEQAMRIAIEAAGFTPGEANELRRAMATFRSPGTIERFFNRMI 683

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
             G   +G  +  A   F  +  F  YGF +SHAA++A + Y +AW+K ++P EF AA + 
Sbjct: 684  EGMIASGHERDFAERCFRQIEGFGTYGFPESHAASFAHLVYVSAWLKCYHPAEFAAALLN 743

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
             +     +  +  +DAR+  I +    V     D  V    +   L  I+G     A  I
Sbjct: 744  AQPMGFYQPAQIVRDAREHGIAVRAADVAASSWDCTVESGALRLGLRMIRGFRADWAARI 803

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
                A+                 L    LE+L  AGAL   G  R   L         A 
Sbjct: 804  DALRAEGR-------ICLPALASLPTAALEALAEAGALRSLGMDRRTALWQ-------AG 849

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
             VE   +    ++ A  +GT                     + R  G     HP+ + + 
Sbjct: 850  LVEPPASFPLLSLAAPPRGT-------PDLPAMRPEDHVAADYRATGLSLRAHPMGLLRG 902

Query: 974  ILRKMGIKGYEESVA-TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
              R  G+   +   A    G+ + LA +V  +Q+  + +G+   ++T  +         
Sbjct: 903  HPRLEGMMTCQAVTAFAADGSIVDLAGIVTIRQRPGSARGT--VFITIEDETGIANLIV 959


>gi|50914323|ref|YP_060295.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS10394]
 gi|73919250|sp|Q5XBV1|DPO3A_STRP6 RecName: Full=DNA polymerase III subunit alpha
 gi|50903397|gb|AAT87112.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10394]
          Length = 1036

 Score =  717 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1026 (29%), Positives = 508/1026 (49%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EG+ ++                            K + D L V    + 
Sbjct: 102  LHMDYLCQ-HLEGIAVIIP-------------------------SKGWSDTLVVPFDYYI 135

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D+Y +   +  +    +PL       + +++D E   +L A+  +  +++   P V  
Sbjct: 136  GVDQYTDLSHMD-SKRQLIPL---RTVRYFAQDDMETLHMLHAIRDNLSLAET--PVVES 189

Query: 251  DHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D  L +  ++ + +    P+AL+N  ++     +    +   LP F      +  K  + 
Sbjct: 190  DQELADCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNL-KLPHF------NRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL+    AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQELTEAGLKE--------KGLWKEPYQSRLLHELIIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 412  TVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPL--KS 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+      D++ I  +D +T
Sbjct: 470  GDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  LALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K 
Sbjct: 590  EKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  EEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M     +      +  DA + + Q+   ++N+     K+  ++IY  L  IKG+   
Sbjct: 710  DIMMNYSSSD------YITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E    +PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +LD +
Sbjct: 764  FAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNLDGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++F+    ++ D          +++ ++  EQ V+G   S HPL
Sbjct: 821  LVFV--------NELGSLFSDSSFSWVDT------QDYSATEKYSLEQEVVGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +  I+ +      ++ +   +   + S +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  ----IDIAEKSIQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|269962022|ref|ZP_06176376.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833106|gb|EEZ87211.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1024

 Score =  717 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/1040 (25%), Positives = 452/1040 (43%), Gaps = 89/1040 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--KACAAGI 67
            S+  L   S++S L GA     ++ + A  +  AIAITD  ++   ++     +     I
Sbjct: 2    SYAELFCQSNFSFLTGASHAEELVLQAAFYRYQAIAITDECSVAGVVKAHATIEQHKLDI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G    ++ +                  +VLL    + Y  L  +++        ++
Sbjct: 62   KQIVGSMFWLNDE----------------CQVVLLCPCRKAYAELCRIITNSRRR---RE 102

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                 LS    +     ++L   +S   D  +               ++    RL+V +Q
Sbjct: 103  KGTYQLSEWDLMSIRHCLVLWLPTSQESDHYWGR-----------WLQQHHAHRLWVAIQ 151

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH  G D    +    LA   +LP+ A    L  + E      VL AV H   V +    
Sbjct: 152  RHLGGDDDAYTTHCELLANEFQLPITACGGVLMHAVERLPLQHVLTAVKHGCSVDKLGFG 211

Query: 247  RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R++  +  L+  +++  I+    E L  +  IA  C F L       P  +  +      
Sbjct: 212  RLSNAERALRPLNKLSRIYR--AEWLAESTHIASLCEFNLSDLKYEYPTELIPDG----H 265

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     G ++R  +G  A      D  Q ++ EL +I  +++  YFL + D + 
Sbjct: 266  TPTSYLRLLVERGKKLRFPEGVPA------DIHQTIENELTLIEELEYHYYFLTIHDIVM 319

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK+  I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +
Sbjct: 320  FAKQQGILY-QGRGSAANSVVCYCLEITAVDPRQISVLFERFISRERKEPPDIDVDFEHE 378

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG ER A   T  S + K+A+R+VG+AL +  +Q+D   K + N    
Sbjct: 379  RREEVIQYIYKKYGRERAALAATVISYRFKSAVREVGKALGIEETQLDFFIKNV-NRRDR 437

Query: 486  PVSLQAIADDSRFREARLADPSVD--RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                QA     +  E  L   S+   + +++  ++ G  RH S H  G VI   PL +LV
Sbjct: 438  SQGWQA-----QIIELGLQPESLKGQQFIQLVNEIIGFPRHLSQHVGGFVISSGPLYELV 492

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA---QRGVKVDLSL 600
            P+      D  + Q++   +E   L+K D L L  L  ++K    +    QR + +    
Sbjct: 493  PVENASMEDRTIIQWDKDDLESLKLLKVDVLALGMLNAIRKCFQLVEKHHQRSLSIAEIT 552

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
               DD   Y ++    T+G+FQ+ES      L  ++P    D++  +++ RPGPI  D +
Sbjct: 553  RLQDDPHVYRMIQKADTVGVFQIESRAQMSMLPRLKPARYYDLVVQIAIVRPGPIQGDMV 612

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  R+NG+E I      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM 
Sbjct: 613  HPFLKRRNGEEPISYPSEEVKSVLERTMGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMA 672

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K   ++ K K + I G  + G     A  IF+ +  F +YGF +SH+A++AV++Y +A
Sbjct: 673  AWKKNGDLAKFKPKLIDGMRERGYDLEFAERIFDQICGFGEYGFPESHSASFAVLAYCSA 732

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GD 832
            W+K +YP EF  A +  +        +  QDAR+  ++++P  +N       +     G 
Sbjct: 733  WLKFYYPAEFYTALLNSQPMGFYSPSQLIQDARRHGVEVLPVCINHSSYQHHLVKRPNGR 792

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              +      +KG    +A  ++E      + S+++    V     NRR +E L  A A  
Sbjct: 793  LGVQLGFRLVKGFNQESASRLVERRPTTGYRSIQE----VKQILRNRRDIELLASANAFQ 848

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                +R             A+W   +  +    +F H +   ++          +     
Sbjct: 849  ILSGNRY-----------NARWAAMDSLSD-LPLFNHMEEPMANYQAQP-----SEYENL 891

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +    G   S HP+ + +   +       ++ V     + + +  +V  +Q   T  G
Sbjct: 892  IEDYASTGLSLSRHPITLLEEAGKLPRFTRMKQLVEKEHKSLVTVVGVVTGRQSPGTAAG 951

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
              + + T  +         +
Sbjct: 952  --VTFFTLEDDTGNINVVVW 969


>gi|126724469|ref|ZP_01740312.1| DNA polymerase III, alpha subunit [Rhodobacterales bacterium
            HTCC2150]
 gi|126705633|gb|EBA04723.1| DNA polymerase III, alpha subunit [Rhodobacterales bacterium
            HTCC2150]
          Length = 1009

 Score =  717 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/1022 (24%), Positives = 434/1022 (42%), Gaps = 88/1022 (8%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +Y ++  +F  L + ++++ L G       + + A    PA+A+ D N++   +    +A
Sbjct: 36   EYSDRLMAFSELCITTNFTFLTGGSHGEEYVQQGAGFGMPAVAVADLNSVAGVVRAHCEA 95

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKT---PFPTVPSIVLLVS--------------T 105
                    +    D D     +  +            P ++                   
Sbjct: 96   REVARLIALRRVADADPVGPARPDDIDAPVSFDIYATPRVIPGARLMTDLGYQVTALPLN 155

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNS 163
              G+  L  ++S   L    + +   CL  L +I   G  L++L    S         N 
Sbjct: 156  RLGWGNLCRMLSEGRL----RAAKGECLIRLDDIVRWGGDLVLLLHPPS-------AMNK 204

Query: 164  SQVAEKRLL---TFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLF 219
            +  A + L      ++ FG  + V L   + G DR R  +  + A    +P VA+   + 
Sbjct: 205  ATGAREWLAQSARLRRRFGAEMSVVLAPLYDGQDRARFQRHAKWAADLGVPTVASARPIM 264

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
               +  +  DVL AV  S  V    R  +   +  L+  +EM  +F    +A++   EIA
Sbjct: 265  HIAQRRKLVDVLTAVRTSCKVIDLGRAAQANAEQRLRPEAEMRRLFKGHEDAVDRAGEIA 324

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
             RC F L       P  +        +     L   A  GL  R   G   +        
Sbjct: 325  ARCQFSLDELRYEYPSEVSG-----GETPTERLARLAQEGLRWRYPSGTPDR------VT 373

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            + L  EL +I ++++  YFL V D + +A+   I +  GRGS A SV  + L +T + P 
Sbjct: 374  KLLAHELTLIGKLEYEPYFLTVHDIVAFARSRGI-LCQGRGSAANSVVCFLLGVTSVSPE 432

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
              +++FERF++  R   PD D+DF  +RR+EVI+++  +YG  R     T    + K A+
Sbjct: 433  VGTMVFERFVSEARNEPPDIDVDFEHERREEVIQHIYERYGRHRAGLCATVVHYRGKRAI 492

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQ 516
            R+VG A+ +    V  L   +    A          D R RE  L  ADP + ++L++  
Sbjct: 493  REVGHAMGLSDDVVAALSSQMWGWGASG------PADERLREIGLDPADPKLMQVLDLVG 546

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            +++G  RH S H  G +I +  L +LVP+      D  V  ++   I+  G++K D L L
Sbjct: 547  QVQGFPRHLSQHVGGFIITEGRLDELVPVENATMEDRTVICWDKDDIDTLGILKVDVLAL 606

Query: 577  KTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
              L+ ++K+ D +      + +L+ +P +D   Y +L    ++G+FQ+ES      L  M
Sbjct: 607  GMLSCIRKAFDLIQTHHQTEFNLATLPPEDPAVYDMLCKADSVGVFQVESRAQMNFLPRM 666

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
            +P C  D++  V++ RPGPI  D +  Y  R+NG+E +      +  +L +T GV ++QE
Sbjct: 667  RPRCFYDLVIEVAIIRPGPIQGDMVHPYIRRRNGEEPVSFPSDELGAVLSKTLGVPLFQE 726

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            Q MQIA + +G++  EAD LRRA+   K   ++    +RFI G  KNG  +  A   F  
Sbjct: 727  QAMQIAIIGAGFTPDEADRLRRALATFKKLGKVSSFYDRFIRGMLKNGYERDFAERCFSQ 786

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  F  YGF +SHAA++A++ Y +AW+K H+P  F  A +  +        +  +DAR+ 
Sbjct: 787  IEGFGSYGFPESHAASFALLVYASAWIKCHHPGIFACALLNSQPMGFYAPAQIVRDAREH 846

Query: 813  NIQIMPPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
             +++ P  +N       +  +      +      IK +       I  A  +  + ++ED
Sbjct: 847  GVKVRPVCINASYWGNIMETDGQGGLALRLGFRQIKALREEEVNWITAARGNG-YQTIED 905

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE--N 925
               R        R L++L  A A    G +R + L             +           
Sbjct: 906  IWRRA---GTQPRQLQALAEADAFADMGLNRREALW------------QAKAVTGQSPPP 950

Query: 926  IFAHE---KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
            +FA E   +G   D + L   ++    V    +   +      HPL + +  L    +  
Sbjct: 951  LFAGELEGEGIVEDTVHLPTMTLGEEVV---EDYVAMRLTLKAHPLALLRNRLTPQPVAR 1007

Query: 983  YE 984
              
Sbjct: 1008 AN 1009


>gi|269966539|ref|ZP_06180622.1| putative DNA polymerase III alpha chain [Vibrio alginolyticus 40B]
 gi|269828883|gb|EEZ83134.1| putative DNA polymerase III alpha chain [Vibrio alginolyticus 40B]
          Length = 1024

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/1040 (24%), Positives = 450/1040 (43%), Gaps = 89/1040 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--KACAAGI 67
            S+  L   S++S L GA     ++ + A  +  A+AITD  ++   ++     +     I
Sbjct: 2    SYAELFCQSNFSFLTGASHAEELVLQAAFYRYQALAITDECSVAGIVKAHATIEQHKLDI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G    ++ +                  IVLL    + Y  L  +++      + K 
Sbjct: 62   KQIVGSMFWLNDE----------------CQIVLLCPCRKAYAELCRIITNARRRSE-KG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            + ++   W        L++            +     +          +   +RL+V +Q
Sbjct: 105  NYQL-FEWDLMSVRHCLVL------------WLPTHQESDHYWGRWLNQHHANRLWVAIQ 151

Query: 188  RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH    D    +   QLA+  +LP+ A    L    E      VL A+ H   V +    
Sbjct: 152  RHLSNNDTEYIAHCEQLAHEFQLPITACGGVLMHDVERLPLQHVLTAIKHGCSVDKLGFD 211

Query: 247  RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R++  +  L+   +++ I+   PE LE +  IA  C F L       P  +  +      
Sbjct: 212  RISNTERALRPFKKLIRIYK--PEWLEESTYIADLCEFKLSDLKYEYPTELIPDG----Y 265

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              ++ LR     G ++R  +G  A      +  Q ++ EL +I  +K+  YFL + D + 
Sbjct: 266  TPDSYLRMLVERGKKLRFPEGVPA------EVNQTIENELALIQELKYHYYFLTIHDIVM 319

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK+  I    GRGS A SV  Y L IT +DP + ++LFERF++ +R   PD D+DF  +
Sbjct: 320  FAKQQGILY-QGRGSAANSVVCYCLEITAVDPRQIAVLFERFISKERKEPPDIDVDFEHE 378

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG ER A   T  S + K+A+R+VG+AL +  +Q+D   K + N    
Sbjct: 379  RREEVIQYIYKKYGRERAALAATVISYRFKSAVREVGKALGIEETQLDFFIKNV-NRRDR 437

Query: 486  PVSLQAIADDSRFREARLADPSVD--RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                QA     +  E  L   S+   + +++  ++ G  RH S H  G VI   PL +LV
Sbjct: 438  SQGWQA-----QIIELGLQPESLKGQQFIQLVNEIIGFPRHLSQHVGGFVISSGPLYELV 492

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA---QRGVKVDLSL 600
            P+      D  + Q++   +E   L+K D L L  L  ++K    +    QR + +    
Sbjct: 493  PVENASMEDRTIIQWDKDDLESLKLLKVDVLALGMLNAIKKCFQLVEKHHQRSLSISEIT 552

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
               DD   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI  D +
Sbjct: 553  RRQDDPHVYRMIQKADTIGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGPIQGDMV 612

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  R++ KE +      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM 
Sbjct: 613  HPFLKRRDHKEPVNYPSEEVKSVLERTMGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMA 672

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K   ++ K + + I+G  + G     A  IF+ +  F +YGF +SH+A++AV++Y +A
Sbjct: 673  SWKKNGDLAKFRPKLINGMQERGYDLAFAERIFDQICGFGEYGFPESHSASFAVLAYCSA 732

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GD 832
            W+K +YP EF  A +  +        +  QDAR+  ++++P  VN       +     G 
Sbjct: 733  WLKYYYPAEFYTALLNSQPMGFYSPSQLVQDARRHGVEVLPVCVNHSKYQHHLVSRPNGR 792

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              +      +KG    +A+ ++E      + S+++    V     +R  +E L  A A  
Sbjct: 793  LGVQLGFRLVKGFNAESAQRLIERKPLNGYRSIQE----VKQILRSRSDIELLASANAFQ 848

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                +R     +                   +++         ++  +   +  +     
Sbjct: 849  ALSGNRYNARWA-----------------AMDSLSDLPLFHKVEEPNVSYQTQPSEYENL 891

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +    G   S HP+ + +   +        +       + + +  +V  +Q   T  G
Sbjct: 892  IEDYASTGLSLSRHPIKLLEETGKLPHFTRMRQLTEKPHKSLVTVVGVVTGRQSPGTAAG 951

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
              + + T  +         +
Sbjct: 952  --VTFFTLEDDTGNINVVVW 969


>gi|149203459|ref|ZP_01880429.1| DNA polymerase III, alpha subunit [Roseovarius sp. TM1035]
 gi|149143292|gb|EDM31331.1| DNA polymerase III, alpha subunit [Roseovarius sp. TM1035]
          Length = 965

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/1005 (25%), Positives = 412/1005 (40%), Gaps = 75/1005 (7%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           +   +  +  F  L   S+++ L GA      +   AA     +AI D N++   +    
Sbjct: 1   MGLGISAAMPFAELSATSNFTFLTGASHPEEYIRHAAALGLSGVAIADVNSVAGIVRAHA 60

Query: 61  KAC--AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS-------------- 104
            A   A  +      +                  +   P ++                  
Sbjct: 61  AAREIAREVAARQALEARQGPIGPPAPQPAAPPDWANCPRLIPAARLVLREGIEITALPV 120

Query: 105 TAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFN 162
              G+  L  L+S    L + +     C   L ++  G  GL +L   + G   RA+   
Sbjct: 121 NRGGWASLCRLIS----LGRQRAIKGACDLGLADVLAGAAGLHLLVHPAPG---RAWQAQ 173

Query: 163 SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
             Q+A +   +   L   R         G D  R  ++  LA    LP VA    +    
Sbjct: 174 VLQLAARWGGSVALLLSPRY-------DGRDPARFERLTGLAARLGLPTVAAAAPILHRG 226

Query: 223 EDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
                 DVL A+     V +  R  +   +  L++  EM  +F+    A+     +A R 
Sbjct: 227 YRRRLADVLSAIRLGVTVDRLGRHALRNAEQRLRSEEEMRRLFAGHEGAVSRAAALAARL 286

Query: 282 SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            F L       P  + +      +     LR  A AGLE R   GA A+       R  +
Sbjct: 287 DFSLDELRYEYPSEVAE-----NETPAQRLRRLAEAGLEWRYPGGAPAR------VRGMM 335

Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
           + EL +IA++++  YFL V D + +A+   I +  GRGS A SV  Y L +T + P   +
Sbjct: 336 EHELALIAKLRYEPYFLTVHDVVAFARSRGI-LCQGRGSAANSVVCYCLGVTSVSPEIGT 394

Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
           ++FERF++  R   PD D+DF  +RR+EVI+++  +YG  R     T    + K A+R+V
Sbjct: 395 MVFERFVSEARDEPPDIDVDFEHERREEVIQWIYERYGRHRAGLCATVIHYRTKRAIREV 454

Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLE 519
           GRA+ +    +  +   I          +   + +R  E  L   DP + R L + +++ 
Sbjct: 455 GRAMGLSEDLLGAMTSQIWGHGG-----EGALEPARLAEIGLDPRDPRLARTLALIREII 509

Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
           G  RH S H  G VI +  L +LVP+         V  ++   I+  G++K D L L  L
Sbjct: 510 GFPRHLSQHVGGFVITEGRLDELVPIENASMEGRTVICWDKDDIDALGILKVDVLALGML 569

Query: 580 TLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
           T ++K+ D L Q RG    L+ +P +D + Y +L+   +LG+FQ+ES      L  M+P 
Sbjct: 570 TCIRKAFDLLGQHRGQVYSLATLPPEDAQVYEMLSRADSLGVFQVESRAQMNFLPRMRPR 629

Query: 639 CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
              D++  V++ RPGPI  D +  +  R+NG+E +      +  +L +T GV ++QEQ M
Sbjct: 630 TFYDLVIQVAIIRPGPIQGDMVHPFIRRRNGEEAVSFPSDDLGRVLGKTLGVPLFQEQAM 689

Query: 697 QIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           QIA + +G++  EAD LRR++   K    + + + RF+ G   NG     A   F  +  
Sbjct: 690 QIAIIGAGFTPEEADRLRRSLATFKKHGNVSEFRARFLRGMQANGYDSDFAERCFSQIEG 749

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
           F  YGF +SHAA++A + Y +AW+K H+P  F  A +  +        +  +DAR+  + 
Sbjct: 750 FGSYGFPESHAASFAHLVYASAWLKCHHPAIFACALLNSQPMGFYAPAQIVRDAREHGVT 809

Query: 816 IMPPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
           + P  +N    D  +  +      +      IKGV    A  I  A  +  +   ED   
Sbjct: 810 LRPVCINASYWDNTIEPDSRGRLALRLGFRQIKGVAQDEADWIAAARGNG-YVGPEDVWR 868

Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
           R     +    L  L  A      G SR   L     I             +   +FA +
Sbjct: 869 RA---GVAPAALTRLAEADVFAALGLSRRDALWQARAI----------GAERPLPLFARD 915

Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
                                   +   L      HPL + + IL
Sbjct: 916 IDGEGIVEPAAHLPAMTLGEEVVEDYTALRLSLRAHPLALLRHIL 960


>gi|149915320|ref|ZP_01903847.1| DNA polymerase III, alpha subunit [Roseobacter sp. AzwK-3b]
 gi|149810609|gb|EDM70450.1| DNA polymerase III, alpha subunit [Roseobacter sp. AzwK-3b]
          Length = 962

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/993 (24%), Positives = 419/993 (42%), Gaps = 66/993 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ-- 68
           F  L + S+++ L GA      + + A    PAIAI D N++   +     A   G Q  
Sbjct: 2   FAELSITSNFTFLTGASHPEEYVQRAACLGLPAIAIADDNSVAGIVRAHAAAREIGRQVA 61

Query: 69  ----------PIIGCQLDIDMQDNLKMTN------QGKTPFPTVPSIVLLVSTAEGYQRL 112
                     PI     +    D     N        +       ++  L     G+  L
Sbjct: 62  ERQALEARDGPIGPPAPEGLAADGPDWANIPCLIPAARLCLTEGVTLTALPQDRTGWASL 121

Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             L++      + K +  + L  + + G EGL +L           +       A + + 
Sbjct: 122 CRLLTTGRRRTE-KGACHLTLDDVLQ-GAEGLELLLHPPGPAQAADWLA----QARRLVG 175

Query: 173 TFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
                      +    + G D  R  ++ +LA    LP +A+           +  DV+ 
Sbjct: 176 RLGAQMH---LLMAPEYDGQDSTRFDRLAKLADRLGLPALASACPRMHHGRRRKLADVMT 232

Query: 233 AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
           A+     V +  R  +   +  L++ +EM+ +F+    A+    E+A R +F L      
Sbjct: 233 AIRKGVRVDELGRAALANAECRLRSEAEMLRLFAGHEAAVHQAGEVAARLAFSLDELRYE 292

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            P  +        +     LR  A+ GL+ R   GA  K       R  L+ EL +I ++
Sbjct: 293 YPSEVAH-----GETPAERLRRLALKGLDWRYPHGASDK------VRAMLEHELTLIGKL 341

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            +  YFL V D + +A+  +I +  GRGS A SV  Y L +T + P   +++FERF++  
Sbjct: 342 GYEPYFLTVHDVVAFARSRDI-LCQGRGSAANSVVCYCLGVTSVSPEIGTMVFERFVSEA 400

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R   PD D+DF  +RR+EVI+++  +YG +R     T    + K A+R+VGRA+ +    
Sbjct: 401 RNEPPDIDVDFEHERREEVIQWIYERYGRQRAGLCATVIHYRGKRAIREVGRAMGLSQDT 460

Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
           +  L   +    +   S Q   D  R       D  + + +E+  ++EG  RH S H  G
Sbjct: 461 ISALSSQLWGFFS---SGQVARDRIREIGLDPDDRRLRQTMELVDEIEGFPRHLSQHVGG 517

Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            VI +  L +LVP+     ++  V  ++   I+  G++K D L L  LT ++K+ + LA+
Sbjct: 518 FVITEGRLDELVPIENASMAERTVICWDKDDIDTLGILKVDVLSLGMLTCIRKAFELLAR 577

Query: 592 RG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
               +  L+ +P +D   Y +L    ++G+FQ+ES      L  M+P C  D++  V++ 
Sbjct: 578 HHGQEHTLATLPPEDPRVYDMLCRADSVGVFQVESRAQMNFLPRMRPRCFYDLVIEVAII 637

Query: 651 RPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
           RPGPI  D +  Y  R+NG+E++      +  +L +T GV ++QEQ MQIA   +G+S  
Sbjct: 638 RPGPIQGDMVHPYIRRRNGEEQVSFPSDALGAVLGKTLGVPLFQEQAMQIAITGAGFSPD 697

Query: 709 EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
           EAD LRR++   K    + + ++RF+ G  +NG     A   F  +  F  YGF +SHAA
Sbjct: 698 EADRLRRSLATFKKHGSVSEFRDRFLRGMKRNGYDMDFAERCFSQIEGFGSYGFPESHAA 757

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
           ++A++ Y +AW+K H+P  F  A +  +        +  +DAR+  + + P  +N    D
Sbjct: 758 SFALLVYASAWIKCHHPGIFACALLNSQPMGFYAPAQIVRDAREHGVTVRPVCINASYWD 817

Query: 828 FKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
             +  +      +      +KG+    A  I  A  +  +  + D   R     +    +
Sbjct: 818 NVMEPDGNGGLALRLGFRQVKGLAEEDAAWITGARGNG-YLQVGDVWRRA---GVPPATV 873

Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
             L  A A    G SR   L     +            ++   +FA +            
Sbjct: 874 TRLAEADAFAGLGLSRRDALWEAKAL----------AGDRPLPLFAGDMDGEGLTEPAAH 923

Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
                       +   +      HPL + +  L
Sbjct: 924 LPAMTLGEEVVEDYVAMRLSLKAHPLALLRSAL 956


>gi|110677739|ref|YP_680746.1| DNA polymerase III, alpha subunit [Roseobacter denitrificans OCh
           114]
 gi|109453855|gb|ABG30060.1| DNA polymerase III, alpha subunit [Roseobacter denitrificans OCh
           114]
          Length = 991

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/995 (23%), Positives = 408/995 (41%), Gaps = 67/995 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F  L + S++S L+GA      + + AA    AIAI D N +   +    +A     Q  
Sbjct: 2   FAELNITSNFSFLKGASHPEEYMSRAAALGIEAIAIADENTVAGIVRAYAQARDIARQVR 61

Query: 71  IGCQLDIDMQD------------------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
                +                         ++    +  F     I  L     G+  L
Sbjct: 62  ERQAWEAANDQIGPALPAGLRVAPATLYATPRLIPAARLVFADACDITALPENRAGWGAL 121

Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             L+S      + K +  +    L E G    ++L   + G               +   
Sbjct: 122 CRLLSTGRQRAE-KGACDLRQQDLLEGGCGLQLILWPQAQG---VPCGAGGW---VQTAR 174

Query: 173 TFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
                FG ++++ L  ++ G D  R + + + A    LP VA+   +       +  DV+
Sbjct: 175 QLTHRFGGKIHIGLFPQYDGRDPQRFADLTEQARRLGLPTVASAAPVMHHGARRKLADVV 234

Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            A+     V    R  +   +  L++ +EM  +F     A++    +A+   F L     
Sbjct: 235 TAIRAGCRVDDLGRDALPNSEARLRSEAEMRRLFKGFDSAVDRAHTLAQSLQFSLDELRY 294

Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             P  I +      +     LR  A  GL  R   GA  K        + L+ EL +I +
Sbjct: 295 EYPSEIAE-----NETPSGRLRRLAYEGLAWRYPAGASDK------VHRLLEHELTLIGK 343

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           +K+  YFL V D + +A+  +I +  GRGS A SV  Y L +T + P   +++FERF++ 
Sbjct: 344 LKYEPYFLTVRDIVAFARSRDI-LCQGRGSAANSVVCYCLGVTSVSPEIGTMVFERFVSE 402

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            R   PD D+DF  +RR+EVI+++  +YG  R     T    + K A+R+VGRA+ +   
Sbjct: 403 ARNEPPDIDVDFEHERREEVIQHIYERYGRHRAGLCATVVHYRVKRAIREVGRAMGLSED 462

Query: 471 QVDRLCKLIPN-DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            +  L   +        +  + +A+          D  + + L +  ++ G  RH S H 
Sbjct: 463 TISALSSQLWGFFSTKGIEAERMAEIG----LDANDRRLQQTLALVHEINGFPRHLSQHV 518

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G VI +  L +LVP+         V  ++   IE  G++K D L L  LT ++K+ D +
Sbjct: 519 GGFVITEGRLDELVPIENATMEGRTVICWDKDDIEALGILKVDVLSLGMLTCIRKAFDLM 578

Query: 590 A-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
                V   L+ +P +D   Y +L    ++G+FQ+ES      L  M+P C  D++  V+
Sbjct: 579 QMHHNVSHTLASLPPEDPAVYDMLCRADSIGVFQVESRAQMNFLPRMRPRCFYDLVIEVA 638

Query: 649 LYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
           + RPGPI  D +  Y  R+NG+E++      +  +L +T GV ++QEQ MQIA + +G++
Sbjct: 639 IIRPGPIQGDMVHPYIRRRNGEEEVSFPSDELGEVLGKTLGVPLFQEQAMQIAIVGAGFT 698

Query: 707 LSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
             +AD LRR++   K    + + K  F+ G  + G     A   F  +  F  YGF +SH
Sbjct: 699 PDQADRLRRSLATFKKHGNVSEFKNLFLRGMKRKGYDDDFAERCFSQIEGFGSYGFPESH 758

Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
           AA++A++ Y ++W+K H+P  F  A +  +        +  +DAR+  + + P  +N   
Sbjct: 759 AASFALLVYASSWIKCHHPGIFACALLNSQPMGFYAPAQIVRDAREHGVDVRPICINASF 818

Query: 826 VDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
            D  +  +      +      IKG+    A  +  A  +  + S+ D   R     L   
Sbjct: 819 WDNVMEPDGRGGLALRLGFRQIKGISEEDATWLTAARGNG-YRSVRDVWRRA---GLQPV 874

Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
           ++E L  A        +R   L     +   A             +FA +    +     
Sbjct: 875 MIERLAEADVFAALDLNRRAALWEAKALVPGA----------PLPLFAGDIDGEAIDEPA 924

Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
                         +   +      HP+ + +  L
Sbjct: 925 ALLPEMTLGEEVVEDYVAMRLTLRAHPMALLRHRL 959


>gi|24379620|ref|NP_721575.1| DNA polymerase III DnaE [Streptococcus mutans UA159]
 gi|24377571|gb|AAN58881.1|AE014956_2 DNA polymerase III, alpha chain [Streptococcus mutans UA159]
          Length = 1034

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1026 (29%), Positives = 496/1026 (48%), Gaps = 104/1026 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L + + K        I I D +NL+ A  F ++A    + PI
Sbjct: 2    FAQLDTKTVYSFMDSLIDLKSYIKKAKEMGYSHIGIMDGDNLYGAFHFIKEAQKEKLVPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +LD+ + D+L              ++  +     GY  L+++ +      Q      
Sbjct: 62   LGLELDLFLSDDL-------------TTVCFIAQNTIGYHNLLKISTAKMTGQQ------ 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               S ++E   +GL ++     G ID+                    F    Y+ +    
Sbjct: 103  -LFSDIEEF-MDGLAIIVPYFEG-IDQMD------------------FPFSFYIGV---- 137

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                       QL +  ++  +  +   +   +D E   +L A+  +  + +   P V+ 
Sbjct: 138  ------RKDTPQLDFKRDI--LPLHTVRYYDNDDTETLQILHAIRDNLPLREV--PPVSK 187

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D YL ++ EM  IF +  P++L N  ++    S+        LPRF         K    
Sbjct: 188  DQYLFSQEEMEQIFEERFPQSLLNLEKLVANVSYQFDTDL-KLPRFSRD------KPAVV 240

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL+  A  GL        + K   + DY++RL  EL VI +M F  YFLIV D +++ + 
Sbjct: 241  ELKELAQKGL--------VEKKLLSDDYQKRLSDELAVIHQMGFDDYFLIVWDLLRFGRS 292

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             +  +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R +
Sbjct: 293  QHYYMGMGRGSAAGSLVAYALDITGIDPVKNDLLFERFLNEERYSMPDIDIDLPDIYRSQ 352

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             + YV+++YG    AQI+TF +  A+ A+RDV +       ++ ++ K I          
Sbjct: 353  FLNYVRDRYGSTHSAQIVTFSTFGARQAIRDVFKRFGATEYELSQITKKISFRDNLT--- 409

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     R  EI++K+EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 410  SVYDKKIAFRQLINSKIEYQRAFEIAKKIEGNPRQTSIHAAGIVMSDDNLTDHIPL--KT 467

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHET 608
              ++ +TQ++   +E  GL+K DFLGL+ LT +QK  + +AQ     +D+  I  +D ET
Sbjct: 468  GEEMMITQYDAPAVEANGLLKMDFLGLRNLTFIQKMQEKVAQDYGHAIDIRAIDLEDKET 527

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E++G    L+ ++P   E+++A  SL RPG  D    +  RK G+
Sbjct: 528  LALFAAGDTKGIFQFEAAGAINLLKRIKPSRFEEVVATTSLNRPGASDYTENFIRRKYGQ 587

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++  I   I  +LK T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM K 
Sbjct: 588  EEVDLIDSSIASILKSTYGIMLYQEQVMQIAQIFAGFTLGKADLLRRAMSKKNTVEMQKM 647

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ F+ GA + G    +A N+F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 648  EKDFLQGADQLGRDLKVAQNLFARMAKFAGYGFNRSHAYAYSALAFQMAYFKVHYPAVFF 707

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  +A + + ++ P S+NT     K+   +IY  L  IKG+   
Sbjct: 708  DVMLNYSSGD------YLSNALETHFKLGPLSINTIPYSDKISHGQIYLGLKNIKGLNRD 761

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+    ++PF S+EDF  R+  K     ++  L+  G  D F  +R +++ +L+++
Sbjct: 762  FAYWII---GNRPFSSIEDFLIRIPEKYQKTEIITPLIQVGLFDQFDKNRQKIVVNLEHL 818

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++FA     + +           ++ +++ EQ ++G   S HPL
Sbjct: 819  FTFV--------NELGSLFADSSYNWIEA------QDYTNAEKYQLEQDIIGAGVSPHPL 864

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + K   +        + GN   + A + S +  +T+ +G ++ +++ ++  K+ 
Sbjct: 865  ----IEIAKHSSRHLIALTDLVEGNEATILAQIESIRIIRTKSRGEQMAFLSVTDTKKKL 920

Query: 1028 EANFFP 1033
                FP
Sbjct: 921  NITLFP 926


>gi|91228566|ref|ZP_01262486.1| putative DNA polymerase III alpha chain [Vibrio alginolyticus 12G01]
 gi|91187890|gb|EAS74202.1| putative DNA polymerase III alpha chain [Vibrio alginolyticus 12G01]
          Length = 1024

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/1040 (24%), Positives = 449/1040 (43%), Gaps = 89/1040 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--KACAAGI 67
            S+  L   S++S L GA     ++ + A  +  A+AITD  ++   ++     +     I
Sbjct: 2    SYAELFCQSNFSFLTGASHAEELVLQAAFYRYQALAITDECSVAGVVKAHATIEQHKLDI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G    ++ +                  IVLL    + Y  L  +++      + K 
Sbjct: 62   KQIVGSMFWLNDE----------------CQIVLLCPCRKAYAELCRIITNARRRSE-KG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            + ++   W        L++            +     +          +   +RL+V +Q
Sbjct: 105  NYQL-FEWDLMSVRHCLVL------------WLPTHQESDHYWGRWLNQHHANRLWVAIQ 151

Query: 188  RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH    D    +   QLA+  +LP+ A    L    E      VL A+ H   V +    
Sbjct: 152  RHLSNNDTEYIAHCEQLAHEFQLPITACGGVLMHDVERLPLQHVLTAIKHGCSVDKLGFG 211

Query: 247  RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R++  +  L+   +++ I+   PE LE +  IA  C F L       P  +  +      
Sbjct: 212  RISNTERALRPFKKLIRIYK--PEWLEESTYIADLCEFKLSDLKYEYPTELIPDG----Y 265

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              ++ LR     G  +R  +G  A      +  Q ++ EL +I  +K+  YFL + D + 
Sbjct: 266  TPDSYLRMLVERGKRLRFPEGVPA------EVNQTIENELALIQELKYHYYFLTIHDIVM 319

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK+  I    GRGS A SV  Y L IT +DP + ++LFERF++ +R   PD D+DF  +
Sbjct: 320  FAKQQGILY-QGRGSAANSVVCYCLEITAVDPRQIAVLFERFISKERKEPPDIDVDFEHE 378

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG +R A   T  S + K+A+R+VG+AL +  +Q+D   K + N    
Sbjct: 379  RREEVIQYIYKKYGRKRAALAATVISYRFKSAVREVGKALGIEETQLDFFIKNV-NRRDR 437

Query: 486  PVSLQAIADDSRFREARLADPSVD--RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                QA     +  E  L   S+   + +++  ++ G  RH S H  G VI   PL +LV
Sbjct: 438  SQGWQA-----QIIELGLQPESLKGQQFIQLVNEIIGFPRHLSQHVGGFVISSGPLYELV 492

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA---QRGVKVDLSL 600
            P+      D  + Q++   +E   L+K D L L  L  ++K    +    QR + +    
Sbjct: 493  PVENASMEDRTIIQWDKDDLESLKLLKVDVLALGMLNAIKKCFQLVEKHHQRSLSISEIT 552

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
               DD   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI  D +
Sbjct: 553  RRQDDPHVYRMIQKADTIGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGPIQGDMV 612

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  R++ KE +      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM 
Sbjct: 613  HPFLKRRDHKEPVSYPSEEVKSVLERTMGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMA 672

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K   ++ K + + I+G  + G     A  IF+ +  F +YGF +SH+A++AV++Y +A
Sbjct: 673  SWKKNGDLAKFRPKLINGMQERGYDLAFAERIFDQICGFGEYGFPESHSASFAVLAYCSA 732

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GD 832
            W+K +YP EF  A +  +        +  QDAR+  ++++P  VN       +     G 
Sbjct: 733  WLKYYYPAEFYTALLNSQPMGFYSPSQLVQDARRHGVEVLPVCVNHSKYQHHLVSRPNGR 792

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              +      +KG    +A+ ++E      + S+++    V     +R  +E L  A A  
Sbjct: 793  LGVQLGFRLVKGFNAESAQRLIERKPLNGYRSIQE----VKQILRSRSDIELLASANAFQ 848

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                +R     +                   +++         ++  +   +  +     
Sbjct: 849  ALSGNRYNARWA-----------------AMDSLSDLPLFHKVEEPNVSYQTQPSEYENL 891

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +    G   S HP+ + +   +        +       + + +  +V  +Q   T  G
Sbjct: 892  IEDYASTGLSLSRHPIKLLEETGKLPHFTRMRQLTEKPHKSLVTVVGVVTGRQSPGTAAG 951

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
              + + T  +         +
Sbjct: 952  --VTFFTLEDDTGNINVVVW 969


>gi|269218398|ref|ZP_06162252.1| putative DNA polymerase III dnae2 [Actinomyces sp. oral taxon 848
            str. F0332]
 gi|269211509|gb|EEZ77849.1| putative DNA polymerase III dnae2 [Actinomyces sp. oral taxon 848
            str. F0332]
          Length = 1187

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/1137 (24%), Positives = 466/1137 (40%), Gaps = 144/1137 (12%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E +  +  L VHS+YS L+GA    +++ +    +  A+A+TD       ++ +  A  A
Sbjct: 31   EGAVPYAELHVHSAYSFLDGASLPADLVARACELELQALAVTDHGGFPGVVQLASAARTA 90

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+  +IG +L +  +D            P    IVLL    EGY+RL   V    L    
Sbjct: 91   GLPAVIGTELTLLSEDR------SAQADPPGEHIVLLARDPEGYRRLSRTVGEAMLASGE 144

Query: 126  KQSVRICLSWLQ------------------------------EIGTEGL----------- 144
            K   R  L  L                               E    GL           
Sbjct: 145  KNRARYELEDLAAASGGNWMVLSGCRKGGVRRALEGLEGQGAEGSRGGLPLEGAGSRERA 204

Query: 145  ----IMLTGGSSGPIDRAFFFNSS-------------QVAEKRLLTFKKLF-GDRLYVNL 186
                I  + G +G    + F   +               A +++   + LF    + V L
Sbjct: 205  DCLGIAGSPGIAGGRRNSGFNPGASAFSGPSPALWDVDAAVEQVRRLESLFGKGNVAVEL 264

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                   DR R   +V+ A    +P +AT N  +    D +  DV  A    T + + D 
Sbjct: 265  TNSGAPLDRERCRALVETANRAGVPYLATGNVHYARPRDRDVADVFAATRARTTLEEIDP 324

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                   +L++  +M+S+  D PEA+     I   C+F L + AP LP F   E      
Sbjct: 325  FLPANGSHLRSGGQMLSLHRDHPEAVAEAARIGAECAFDLALVAPDLPDFPVPEG----H 380

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E + LR         R                + +D EL+VI  + F GYFLIV + + 
Sbjct: 381  TEASWLRCLTRERALKRY-----GPRSSNPRAWEVIDHELDVIVGLGFPGYFLIVCEIVD 435

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            + +   I    GRGS A S   +AL IT +D +R  +LFERFL+P R   PD D+D   D
Sbjct: 436  FCRSRGIWC-QGRGSSANSAVCFALGITAVDAVRHKMLFERFLSPGRSGPPDIDVDIESD 494

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI++V  +YG +  AQ+    S + ++A+RD  +AL     QV+   + +     H
Sbjct: 495  RREEVIQHVYERYGRKCAAQVANTISYRPRSAIRDAAKALGYEEGQVEAWLRSV----EH 550

Query: 486  PVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             V  +A +   + +  A         + +++ +++ L RH   H  G+V+ DRP+  + P
Sbjct: 551  KVPAKADVGGSAGYEPAGYEADVPAAVADLASRMQRLPRHLGIHTGGMVLCDRPVIDVCP 610

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------AQRGVKVDL 598
                      V Q++     +AGL+KFD LGL  LT L+KS   L         G  + L
Sbjct: 611  AGWARMPGRTVLQWDKDDCAEAGLVKFDLLGLGMLTALRKSYTQLTDAGIAGSDGKPLGL 670

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN- 657
              +P +D   Y LL    T+G+FQ+ES      L  ++P+C  DI+  V+L RPGPI   
Sbjct: 671  HNLPQEDPRVYALLQAADTVGVFQVESRAQMATLPRLRPECFYDIVIEVALIRPGPIQGD 730

Query: 658  -IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+ G+E +   HPL  P L++T GV ++QEQ+MQIA  ++G++ ++AD LR+A
Sbjct: 731  AVSPYLARRRGREPVTYPHPLTKPALEKTLGVPLFQEQLMQIAIDVAGFTPAQADRLRKA 790

Query: 717  M-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M  K+  E M + K    SG +  G+   +   I++ L  FA++GF +SH+ ++A + Y 
Sbjct: 791  MGAKRSHERMSELKSELYSGMASKGVPPRVREEIYDKLDAFAEFGFPESHSFSFAYLVYA 850

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----- 830
            +AW+K H+P  F A  +  +       +    DAR+  + +  P V     +  V     
Sbjct: 851  SAWLKVHFPEHFYAGILAAQPMGFYSPQSLVADARRHGVHVASPCVVRSLGEASVRKRGA 910

Query: 831  ------------------------------------GDNRIYYSLAAIKGVGTTTARHIM 854
                                                GD  +   L +++G+G      I+
Sbjct: 911  AERDVAKCGGERAEMECDEPECGDGAAASTRLVDPHGDLEVRLGLDSVRGLGAAAVSRIL 970

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
            +A    PF    D   R    +     L +          G  R + + +    Q  A  
Sbjct: 971  KARQGAPFTDAADMARRARLGRGQLEALAAAGAL---QALGVGRREGIWA---AQALADK 1024

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
              + +      +   E  +      L++ + + +++    +    G     +P    +  
Sbjct: 1025 TVQGKGWYQPTLPGTE--SIGTAPALDEMTEQEAAI---ADISSTGVSAGSYPTQFLRGD 1079

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            L   GI    +      G  +R+A +V  +Q+  T  G  + +++  +         
Sbjct: 1080 LAGRGILKVSDLGEAPVGERVRVAGVVTHRQRPWTATG--VTFISLEDETGILNVVC 1134


>gi|322389221|ref|ZP_08062782.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            parasanguinis ATCC 903]
 gi|321144126|gb|EFX39543.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            parasanguinis ATCC 903]
          Length = 1033

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/1030 (29%), Positives = 511/1030 (49%), Gaps = 115/1030 (11%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   S Y+ +E  +++ + +    +    A+ I D +NL+ A EF +   A  + P++
Sbjct: 3    AQLDTKSVYTFMESLVTIKDYVQVAKSMGYGALGIMDIDNLYGAYEFIEACQAQKLNPLV 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++             G         + ++  + +GYQ L+++ +   +     +    
Sbjct: 63   GLEI-------------GLEVDNETIPLRMMALSTKGYQNLMKMSTVKMMGKSNWE---- 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             +  L E     +I+    +SG +               L  F  +F D           
Sbjct: 106  DVKHLTE--GVAVIVPAPFASGDLPLG------------LDYFIGVFADTPVQEFSH--- 148

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P++  +   F   ED EA  +L A+  +  +++     + P 
Sbjct: 149  ------------------PVLPLHTVRFFEAEDVEAMQMLAAIKDNQSLTETG--PIDPT 188

Query: 252  HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              LK   ++ + F++  P+A+ N  ++ +   + +      LPRF      + QK    E
Sbjct: 189  TVLKTPQDLKNDFAERFPQAITNLEKLVQGIQYDIDTQL-KLPRF------NPQKPAVEE 241

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A AGL        + K   +  Y++RL++EL++I +M F  YFLIV D +++ +  
Sbjct: 242  LRELAQAGL--------LRKNLTSPVYQERLEYELDIIHQMGFDDYFLIVWDLLRFGRSQ 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ AYAL IT IDP+  +LLFERFLN +R +MPD DID     R E 
Sbjct: 294  GYYMGMGRGSAVGSLVAYALGITGIDPVEKNLLFERFLNVERYTMPDIDIDIPDIYRPEF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV+++YG    AQI+TF +  AK A+RDV +   +P  ++  + K I           
Sbjct: 354  IRYVRDRYGSYHAAQIVTFSTFGAKQAIRDVFKRFGVPEYELTSITKRIGFRDTLTT--- 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   +  FR+   +    +R  EI++++EG  R  S HAAG+V+ D+ L+  +P+     
Sbjct: 411  AYEQNLAFRQVIHSRAEFERGFEIAKRIEGQPRQTSIHAAGVVMSDQDLTDHIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
             D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + +  +   ++ +  I  +D ET 
Sbjct: 469  EDMFVTQYDAHAVEANGLLKMDFLGLRNLTFVQKMKEAVYEKYQEEIVIEAIDLEDPETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L T   T GIFQ E +G  + L  ++P+  E+++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  ALFTAGDTKGIFQFEQAGAIRLLRRVRPNHFEEVVATTSLNRPGASDYIDNFVKRKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  + P I+ +L+ T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK   EM K +
Sbjct: 589  KVEILDPAIEAILRPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKNVAEMHKME 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F++GA K G ++  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F  
Sbjct: 649  DDFVAGALKLGHTEEKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQMAYFKVHYPDVFFD 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA QF+ ++ P S+NT     K  D +IY  +  IKG+    
Sbjct: 709  VMLNYSSSD------YLTDALQFDFKVAPLSINTIPYRDKFQDRKIYLGMKNIKGLPRDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I++   ++PF+S+EDF  R+ ++     +L  LV  G  D F  +R ++L +L N+ 
Sbjct: 763  AYWIID---NRPFESVEDFILRLPNQYHKLPLLTPLVELGLFDIFEKNRRKVLHNLPNLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL- 968
             +A        ++  ++FA    ++++          + + ++E E+ ++G   S HPL 
Sbjct: 820  VFA--------DELGSLFADSNYSWTEA------EDFSQAEKYEKEEAIIGVGLSTHPLI 865

Query: 969  -----DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
                   Y+       I+   + +   +G   R+   V + +  +T+ G  + ++  S+ 
Sbjct: 866  AIGQTSPYE-------IQPISQLI---QGEQARILIEVQAIRTIRTKSGDLMAFLQVSDT 915

Query: 1024 AKEYEANFFP 1033
             K+ +   FP
Sbjct: 916  KKKLDVTLFP 925


>gi|68536799|ref|YP_251504.1| error-prone DNA polymerase [Corynebacterium jeikeium K411]
 gi|78099244|sp|Q4JTH1|DNAE2_CORJK RecName: Full=Error-prone DNA polymerase
 gi|68264398|emb|CAI37886.1| DNA polymerase III, alpha subunit [Corynebacterium jeikeium K411]
          Length = 1153

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1084 (25%), Positives = 440/1084 (40%), Gaps = 145/1084 (13%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  F  L   S+Y+ L GA     +++        A+A  D +  + A  F+     +G 
Sbjct: 93   TTPFAELHASSAYNFLRGASQPEQMVEAARELGLSALACVDRDGFYGAARFATAVAESG- 151

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
                             +             + +L    EGY RL  +++   + D  K 
Sbjct: 152  ---------------ADLATVFGAELSLDVPLTVLCKGREGYTRLSRVIADARMADPDKD 196

Query: 128  SVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            SVR   L  L E      ++L            FF +                D + V L
Sbjct: 197  SVRYPSLPQLAEAAGGHWLVLLDWRRTDAQLVDFFGA----------------DNVVVEL 240

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q      D  R  ++  LA  H L  + ++     + +         A+     ++  + 
Sbjct: 241  QHTMNPADADRNERLHALAVRHGLREIVSSAPTCATPKHSRLAGAKAALRERKDMAAAEP 300

Query: 246  PRVT-PDHYLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                    +L++  EM+ +  D   L  A+E +V++A  C+F L + AP LP F   E  
Sbjct: 301  TTHPVGGSWLRSGEEMLQLAGDCEWLARAVETSVQVAEECAFTLDLVAPNLPHFPVPEG- 359

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 E   LR     G   R   G       A      +D EL  I ++ F GYFLIV 
Sbjct: 360  ---YTEMTWLRAITERGGAQRY--GPRGSSAAANQAWATIDRELETIEQLGFPGYFLIVH 414

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +  +NNI    GRGS A S   +AL IT +D +   LLFERFL+P+R   PD D+D
Sbjct: 415  DIVSFCHENNI-FCQGRGSAANSAVCFALGITTVDAVASGLLFERFLSPERDGPPDIDLD 473

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
                RR+E I+YV ++YG E  AQ+    + + + A RD GRAL     Q+D   +    
Sbjct: 474  IESGRREEAIQYVYSRYGRENAAQVANVITYRRRGATRDAGRALGYAPGQIDAWTRHPEQ 533

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P                         D +  +++++    RH   H+ G+VI DRP++Q
Sbjct: 534  TP-------------------------DVVQNLAEQMLDHPRHLGIHSGGMVICDRPIAQ 568

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600
            +VP          V Q++       GL+KFD LGL  L  L  ++D + A RG +V+L  
Sbjct: 569  VVPTEWARMEGRSVVQWDKDDCAAVGLVKFDLLGLGMLEALHHAVDQVRAHRGREVELWR 628

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI-- 658
            +   + E Y +L+    +G+FQ+ES      L  ++P    D++  V+L RPGPI     
Sbjct: 629  LDPTESEVYAMLSRADAVGVFQVESRAQMSTLPRLKPRTFYDLVVEVALIRPGPIQGGSV 688

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM- 717
              Y  R+NG E +   HP ++P L +T G+ ++QEQ+MQ+A   +G+S +EAD LRRAM 
Sbjct: 689  HPYIRRRNGLEPVTFDHPCLEPALTKTLGIPLFQEQLMQMAVDAAGFSGAEADTLRRAMG 748

Query: 718  GKKIKEEMDKQKERFISG-ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             K+  ++M++ K+RF  G  +KNGI   +A  +++ +  FA YGF +SH+ ++A + Y +
Sbjct: 749  SKRSPQKMERLKKRFYQGLEAKNGIRGVVADRLWDKIVAFASYGFPESHSQSFASLVYYS 808

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----- 831
            AW K HYP EF  A +  +       +    DAR+  ++++P  VN   V          
Sbjct: 809  AWFKYHYPAEFCVALLRAQPMGFYSPQSLLADARRHGVEVLPVDVNDSDVQVDAVASLAT 868

Query: 832  --------------------DNRIYYSL---AAIKGVGTTTARHIMEASAD-KPFDSLED 867
                                  +I   L     +KG+    A  I+EA      F S+ED
Sbjct: 869  PPRTNRPTGVHGLGRGTGEPVGQIRLGLSGAGGVKGISAEVAERIVEARERIGRFTSVED 928

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
                     L    +E L  AGAL   G +R Q           A W       +   + 
Sbjct: 929  LSR---EAGLTVAHVEKLARAGALGSLGLTRRQ-----------AVWAAGVAATERPGML 974

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK---------- 977
                G  +           ++     +E    G   + HP+ + +  L +          
Sbjct: 975  PGTSGVHA-----PALPGMSAFEMVASELATTGVTTAEHPVQLLREYLDEWHLRPAPRGV 1029

Query: 978  ----------MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
                        +   +  +    G  +R+A +V  +Q+  T  G  + +    +     
Sbjct: 1030 HPGDAAPRGGAAVVTADSLLRVPDGTRVRVAGVVTHRQRPATAGG--VVFFGLEDETGLA 1087

Query: 1028 EANF 1031
                
Sbjct: 1088 NIVV 1091


>gi|94990613|ref|YP_598713.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS10270]
 gi|94544121|gb|ABF34169.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10270]
          Length = 1036

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/1026 (28%), Positives = 508/1026 (49%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EG+ ++                            K + D L V    + 
Sbjct: 102  LHMDYLCQ-HLEGIAVIIP-------------------------SKGWSDTLVVPFDYYI 135

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D+Y +   +  +    +PL       + +++D E   +L A+  +  +++   P V  
Sbjct: 136  GVDQYTDLSHMD-SKRQLIPL---RTVRYFAQDDMETLHMLHAIRDNLSLAET--PVVES 189

Query: 251  DHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D  L +  ++ + +    P+AL+N  ++     +    +   LP F      +  K  + 
Sbjct: 190  DQELTDCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNL-KLPHF------NRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL+    AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQELTEAGLKE--------KGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 412  TVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPL--KS 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+      D++ I  +D +T
Sbjct: 470  GDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  LALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K 
Sbjct: 590  EKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  EEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M     +      +  DA + + Q+   ++N+     K+  ++IY  L  IKG+   
Sbjct: 710  DIMMNYSSSD------YITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E    +PF+S+EDF +R+  K   +  LE L+  G  DCF  +R ++L +LD +
Sbjct: 764  FAYWIIE---QRPFNSVEDFLTRIPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNLDGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++F+    ++ D          +++ ++  EQ ++G   S HPL
Sbjct: 821  LVFV--------NELGSLFSDSSFSWVDA------KDYSATEKYSLEQEIVGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++ +   +   + S +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  ----IDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|83954808|ref|ZP_00963486.1| DNA polymerase III, alpha subunit, putative [Sulfitobacter sp.
            NAS-14.1]
 gi|83840534|gb|EAP79706.1| DNA polymerase III, alpha subunit, putative [Sulfitobacter sp.
            NAS-14.1]
          Length = 1048

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/1014 (25%), Positives = 444/1014 (43%), Gaps = 77/1014 (7%)

Query: 39   DQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS 98
                A+AITD N+L   +          ++ +            L +  +      +   
Sbjct: 1    MGLNALAITDHNSLAGVVRAYSA-----LKELRRELGADAPLPRLVIGAR-LILRDSDTH 54

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
             V L    E Y RL  L++    L + +     C   L ++         G S   + +A
Sbjct: 55   WVALPHDREAYARLTRLLT----LGKRRAPKGACYLDLPDLVQGC----AGMSLIAVPQA 106

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNS 217
                S       + T KK F   +++ +   + G D+        LA+    P+VA  + 
Sbjct: 107  SLKASQPD----IATLKKHFPADVFIGVAPRYDGSDQRYFDACATLAHRTAAPMVAVGDV 162

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
            L       +  DVL  + H+  + Q   R     +  LK  ++M  +F+  P AL  T +
Sbjct: 163  LMHHGARRQLADVLTCLRHNITIDQIGTRALPNAEKRLKPEADMKRLFARHPAALRRTTQ 222

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            IA R SF L   +   P  I        +  ++ L   A  GL+VR  +GA A+      
Sbjct: 223  IAARSSFCLSELSYDYPDEIAD-----NETPQDRLARLASEGLKVRYPKGAPARAI---- 273

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               +++ EL ++  + F  YFL V D +Q+A+   I +  GRGS A S+  Y L ITD+ 
Sbjct: 274  --AQMEKELALVKTLDFPAYFLTVHDIVQFARSKGI-LCQGRGSAANSILCYLLGITDVS 330

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            P   +++ ERF++  R   PD D+DF  +RR+EVI+++  KYG  R     T    +++A
Sbjct: 331  PETITMVVERFVSEHRGEPPDIDVDFEHERREEVIQHIYAKYGRHRAGLCATVIHFRSRA 390

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEI 514
            A+ +VG+ + +       L   I        +     D  R ++  L  +DP +   +++
Sbjct: 391  AISEVGKVMGLSKDVTANLSGQIWG------TSNGGPDPERVKQLGLDLSDPRLALTIKL 444

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
              ++ G  RH S H  G VI    L +L P+      D  + +++   I+   ++K D L
Sbjct: 445  IGEIIGFPRHLSQHVGGFVITKGRLDELCPIENAAMDDRTIIEWDKDDIDALNILKVDIL 504

Query: 575  GLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
             L  LT ++KS D +AQ G  K  ++ IP DD +TY +L     +G+FQ+ES      L 
Sbjct: 505  SLGMLTCIRKSFDLIAQHGGKKYSIASIPQDDAQTYDMLCVADAIGVFQVESRAQMNFLP 564

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
             M+P  + D++  V++ RPGPI   +   Y NR+ G E +V     ++ +L +T GV ++
Sbjct: 565  RMKPRELYDLVIEVAIVRPGPIQGGMVHPYINRRQGNEAVVFPSKELENVLGKTLGVPLF 624

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            QEQ MQIA + +G+  SEAD LRR+M   +    + + +++FI+G    G     A N F
Sbjct: 625  QEQAMQIAVVAAGFLPSEADQLRRSMATFRRMGTIGQLRDKFINGMLARGYENAFAENCF 684

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
              +  F +YGF +SHAAA+A+++Y +AW+K H+P  F    +  +        +  +DAR
Sbjct: 685  SQIEGFGEYGFPESHAAAFAMLAYVSAWLKCHHPAAFACGLLNAQPMGFYAPAQIVRDAR 744

Query: 811  QFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
            + +I++ P  VNT   D  +     G   +      IKG     A  I+ A  +  +   
Sbjct: 745  EHHIEVRPVCVNTSEWDNTLEKRSDGSLALRLGFRQIKGFREEDAGWIVAARGNG-YPDP 803

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
            E    R     L+  VLE L  A A    G  R   L ++  I          + N    
Sbjct: 804  EALWLRA---GLSPAVLERLAEADAYAGLGLGRRDALWAVKAI----------KGNAPLP 850

Query: 926  IFAH---EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
            +F      +G     +TL    +    V    +   +      HP+++ +P +   G+  
Sbjct: 851  LFNDKIEGEGIAEQPVTLPAMHLGQEVV---EDYVAMRLSLKAHPMELLRPAMT--GLTA 905

Query: 983  YEESVATIRG----NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++       G      I +  +V+++Q+  T  G  + ++T  +         +
Sbjct: 906  HDALPEVPLGPMAQRPISVCGLVITRQRPGTASG--VVFLTLEDETGVSNVVVW 957


>gi|323499375|ref|ZP_08104351.1| error-prone DNA polymerase [Vibrio sinaloensis DSM 21326]
 gi|323315560|gb|EGA68595.1| error-prone DNA polymerase [Vibrio sinaloensis DSM 21326]
          Length = 1023

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/1038 (24%), Positives = 446/1038 (42%), Gaps = 88/1038 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--ACAAGIQ 68
            +  L   S++S L GA     +L +    +  +IAITD  ++   +   +   +    I+
Sbjct: 3    YAELFCQSNFSFLTGASHAEELLLQADFLRYHSIAITDECSVAGVVRAYRAVTSNQLNIK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    ++ +                  +VL+  T + Y  L  +++      +  Q 
Sbjct: 63   LIIGSMFWLNSE----------------CQVVLICPTKQAYSELCRVITNARRRSEKGQY 106

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                  W        L++            +     +   K      +    RL++ LQR
Sbjct: 107  --QLSEWDLMTVRHCLVI------------WLPRQQESDRKWGQWLSQHHKHRLWIGLQR 152

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
            H    D+       QLA    LP+ A    L  +        V+ A+     V Q     
Sbjct: 153  HLEANDKAYTQHCEQLAQELMLPITACGGVLMHTATRLPLQHVMTAIKQGQSVEQIGSHL 212

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +  L+++ ++  ++   PE L+ +V IA RC F L+      P  +  + +     
Sbjct: 213  LTNTERALRSKEKLAKLYK--PEWLQESVHIAERCEFKLKELQYQYPSELVPDGE----T 266

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     G   R   G  A      +  + ++ EL +I  + F  YFL + D + +
Sbjct: 267  PNSYLRKLVEKGKRQRFPNGLPA------NVAETIEKELALIEELGFPFYFLTIHDIVMF 320

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+N+I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +R
Sbjct: 321  AKRNHILY-QGRGSAANSVVCYCLEITSVDPRQISVLFERFISRERDEPPDIDVDFEHER 379

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  SQ+D   K + N     
Sbjct: 380  REEVIQYIYQKYGRERAALAATVISYRFKSAVRDVGKALGIEESQLDYFIKNV-NRRDRS 438

Query: 487  VSLQAIADDSRFREARLADPSVD--RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               QA     +  E  L   S+   + +E+   + G  RH S H  G VI   PL +LVP
Sbjct: 439  QGWQA-----QIVELGLQPDSMKGEQFIELVNDILGFPRHLSQHVGGFVIAAGPLHELVP 493

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS--LI 601
            +      D  V Q++   +E   L+K D L L  LT ++K  D + +     + ++    
Sbjct: 494  VENAAMPDRTVIQWDKDDLESLKLLKVDVLALGMLTAIRKCFDLVKRLDNQVLSIAEITR 553

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
              DD   Y ++    T+G+FQ+ES      L  ++P    D++  +++ RPGPI  D + 
Sbjct: 554  RQDDPNVYDMIQQADTVGVFQIESRAQMSMLPRLKPATYYDLVIQIAIVRPGPIQGDMVH 613

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R++G E +      ++ +L  T GV I+QEQV+++A + +G+S  EAD LRRAM  
Sbjct: 614  PFLKRRDGIEPVTYPSKEVEEVLSRTMGVPIFQEQVIKLAMVAAGFSGGEADSLRRAMAA 673

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K   ++ K K + I G    G  +  A  IF+ +  F +YGF +SH+A++AV++Y +AW
Sbjct: 674  WKKNGDLIKFKNKLIEGMRSRGYEQEFAERIFDQILGFGEYGFPESHSASFAVLAYCSAW 733

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----R 834
            +K +YP  F  + +           +  QDA++ ++ ++P  VN    D +V        
Sbjct: 734  LKYYYPEAFYTSLLNSLPMGFYSASQLVQDAKRHDVLVLPVCVNQSLYDHQVVKCGNKLA 793

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I      IKG    ++  +++   ++ F       +++    L+RR +E L  A A+   
Sbjct: 794  IRLGFRQIKGFSRESSLQVIKVRGNQSFS----HPNQLKHIGLSRRDIELLASADAMQAI 849

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R Q   S+               +   ++   ++    + +TL + S          
Sbjct: 850  AQNRYQARWSM--------------MDSLSDLPLFQQIQEQESLTLTQPSA---VQTLLE 892

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +    G     HP+ + +            + +     + + +  +V  KQ   T  G  
Sbjct: 893  DYSATGLSLQQHPIALLEKAGSLGKFTRQRDLIKHAHQSLVTVVGVVTGKQAPGTAAG-- 950

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + + T  +         +
Sbjct: 951  VTFFTLEDDTGNINVVVW 968


>gi|306827247|ref|ZP_07460534.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus pyogenes
            ATCC 10782]
 gi|304430394|gb|EFM33416.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus pyogenes
            ATCC 10782]
          Length = 1036

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/1026 (28%), Positives = 507/1026 (49%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EG+ ++                            K + D L V    + 
Sbjct: 102  LHMDYLCQ-HLEGIAVIIP-------------------------SKGWSDTLVVPFDYYI 135

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D+Y +   +  +    +PL       + +++D E   +L A+  +  +++   P V  
Sbjct: 136  GVDQYTDLSHMD-SKRQLIPL---RTVRYFAQDDMETLHMLHAIRDNLSLAET--PVVES 189

Query: 251  DHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D  L +  ++ + +    P+AL+N  ++     +    +   LP F      +  K  + 
Sbjct: 190  DQELTDCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNL-KLPHF------NRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL+    AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQELTEAGLKE--------KGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 412  TVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPL--KS 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+      D++ I  +D +T
Sbjct: 470  GDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  LALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K 
Sbjct: 590  EKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  EEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M     +      +  DA + + Q+   ++N+     K+  ++IY  L  IKG+   
Sbjct: 710  DIMMNYSSSD------YITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E    +PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +LD +
Sbjct: 764  FAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNLDGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++F+    ++ D          +++ ++  EQ ++G   S HPL
Sbjct: 821  LVFV--------NELGSLFSDSSFSWVDA------KDYSATEKYSLEQEIVGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++ +   +   + S +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  ----IDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|209559542|ref|YP_002286014.1| DNA polymerase III DnaE [Streptococcus pyogenes NZ131]
 gi|209540743|gb|ACI61319.1| DNA polymerase III alpha subunit [Streptococcus pyogenes NZ131]
          Length = 1036

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/1027 (29%), Positives = 513/1027 (49%), Gaps = 104/1027 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EG+ ++                            K + D L V    + 
Sbjct: 102  LHMDYLCQ-HLEGIAVIIP-------------------------SKGWSDTLVVPFDYYI 135

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D+Y +   +  +    +PL       + +++D E   +L A+  +  +++   P V  
Sbjct: 136  GVDQYTDLSHMD-SKRQLIPL---RTVRYFAQDDMETLHMLHAIRDNLSLAET--PVVES 189

Query: 251  DHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D  L +  ++ + +    P+AL+N  ++     +    +   LP F      +  K  + 
Sbjct: 190  DQELTDCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNL-KLPHF------NRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL+    AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQELTEAGLKE--------KGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +  +K A+RDV +   +P  ++  L K I        SL
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGSKQAIRDVFKRFGVPEYELTNLTKKI----GFKDSL 410

Query: 490  QAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              + + S  FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+   
Sbjct: 411  ATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPL--K 468

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHE 607
               D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+      D++ I  +D +
Sbjct: 469  SGDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQ 528

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G
Sbjct: 529  TLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREG 588

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K
Sbjct: 589  QEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQK 648

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F
Sbjct: 649  MEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVF 708

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
                M     +      +  DA + + Q+   ++N+     K+  ++IY  L  IKG+  
Sbjct: 709  YDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPR 762

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A  I+E    +PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +LD 
Sbjct: 763  DFAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNLDG 819

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  +         N+  ++F+    ++ D          +++ ++  EQ ++G   S HP
Sbjct: 820  LLVFV--------NELGSLFSDSSFSWVDA------KDYSATEKYSLEQEIVGVGMSKHP 865

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKE 1026
            L      + +   + +      ++ +   +   + S +  +T+  G ++ +++ ++  K+
Sbjct: 866  L----IDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKK 921

Query: 1027 YEANFFP 1033
             +   FP
Sbjct: 922  LDVTLFP 928


>gi|158425528|ref|YP_001526820.1| DNA polymerase III alpha subunit [Azorhizobium caulinodans ORS 571]
 gi|158332417|dbj|BAF89902.1| DNA polymerase III alpha subunit [Azorhizobium caulinodans ORS 571]
          Length = 1175

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/1118 (21%), Positives = 439/1118 (39%), Gaps = 126/1118 (11%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            T+      S+  L   +++S L GA     ++ +        I I D N +   +     
Sbjct: 19   TERRRPMSSYAELAAATNFSFLHGASHPAEMVARAMELGLTGIGIADRNTVAGVVRAYAA 78

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPF----------------PTVPSIVLLVST 105
               A  +         + +  L    + +                      P I+     
Sbjct: 79   VRDAPEKARAALAAAKERRGELPELTEAEKTACEVKLKLAVGTRFVFADGTPDIIAYPED 138

Query: 106  AEGYQRLIELVSRMYLL---------------------------------DQGKQSVRIC 132
             + + R+  L++R  L                                  +  +  V   
Sbjct: 139  RKAWGRITRLLTRGNLRAVKGGCILNFEDLLEHLEGLLLIVMPQSTAAPQEAHRAPVGYD 198

Query: 133  LSWLQEIGTE----------------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
             +  +E                    G + L    +            +  E  L     
Sbjct: 199  FADQEEAEDAPPEAGGDPEASGVRSFGHLALVPPPA--------PTRPEGLEAVLARLAA 250

Query: 177  LFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
                R+++    HR G D  R +++ +LA    +PL+ATN+ L+ SE+    HDVL  + 
Sbjct: 251  EAPGRVWLGAALHRRGSDGRRLARLRRLASAARVPLLATNDPLYASEDRRPLHDVLTCIR 310

Query: 236  HSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
              T +    R      + +++  +EM  +F   PEAL  T  +  R  F L       P 
Sbjct: 311  EGTTLEAAGRRLEANGERHIRTPNEMARLFRACPEALLETQCLLERIGFSLGDLKYEYPH 370

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                E        ++ L +        R            +  +  L  E  +I + KF+
Sbjct: 371  EPVPEG----WAPQDWLEHLVTEAAHARYG------AVLPEKVKALLAEEFALIRQEKFA 420

Query: 355  GYFLIVADFIQWAKKNNIPV-GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             YFL V D +++A+    P+   GRGS A S+  + L IT +DP++++LLF RF++ DR 
Sbjct: 421  YYFLTVHDLVRFARAQEPPILCQGRGSAANSIVCFLLGITSVDPVQYNLLFSRFVSEDRG 480

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D+DF  +RR+EV++YV  +YG  R     T    + ++A+R+V + L +      
Sbjct: 481  EPPDIDVDFEHERREEVMQYVYRRYGRHRAGIAATVIHYRGRSAVREVSKVLGLTEDVSS 540

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG--LYRHASTHAAG 531
            RL  L+    +  +  + + +          +P + RL  I + L      RH S H  G
Sbjct: 541  RLAGLVWGSHSGDMDARRMQE----AGFDPDNPEMARLRFILEPLLSAPFPRHLSQHVGG 596

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             V+    L + VP++    +D    +++   I+  GL+K D L L  LT ++K+ + +  
Sbjct: 597  FVLTQDRLDETVPIHHAAMADRSFIEWDKDDIDVLGLMKVDVLALGMLTCIRKAFELMRA 656

Query: 592  RGVKVDLSLIPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
             G+      +    DD   Y +L    ++G+FQ+ES      L  ++P  + D+   V++
Sbjct: 657  HGLGEKTLEVDLASDDEAVYDMLCKGDSIGVFQVESRAQINMLPRLKPRKLYDLTIQVAI 716

Query: 650  YRPGPI--DNIVVYNNRKNGKEKIVSIHP-------LIDPMLKETQGVIIYQEQVMQIAQ 700
             RPGPI  + +  Y  R+ G E      P        +  +L ET GV ++QEQ M++A 
Sbjct: 717  VRPGPIEGEMVHPYLRRRAGLEDWSFPSPTPPHPANELHDLLGETYGVPLFQEQAMKLAI 776

Query: 701  LLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            + + ++  +A+ LRRAM   +    +   +   + G  + G ++  A+  F+ +  F  Y
Sbjct: 777  VAADFTPRQANGLRRAMATFRNPGTIHSFRAMMVEGMVRRGYTRDFALRCFKQIEGFGSY 836

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GF +SHA ++A + Y +AW+K H+P  F  A +  +        +  +DAR+  +++ P 
Sbjct: 837  GFPESHALSFARLVYVSAWIKCHHPAVFACALLNSQPMGFYAPAQIVRDAREHGVEVRPV 896

Query: 820  SVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
             VN    D  +     G   +      ++G     A  I+ A A  PF S+ED   R   
Sbjct: 897  EVNASEWDNTLEEAANGRLALRLGFRQVEGFRELWAAEIVAARASGPFSSVEDLARRAHL 956

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
             +   R+L     A AL   G  R   L           W  +        +FA  +   
Sbjct: 957  PRAGLRLL---ADADALRSLGLERRDAL-----------WEVRRTPEGELPLFAAARAGE 1002

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
                        +++ +   + +       GHP+   +P+  + G+    ++ A   G  
Sbjct: 1003 LKAERDLPLPAMSAAEQVAVDYQTTRLSLKGHPMAFLRPLFAERGVLSSAQTAAARAGAK 1062

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +R A +V+ +Q+    KG+ I +VT  +         +
Sbjct: 1063 VRTAGIVLIRQRPG--KGNAI-FVTLEDETGITNVLIW 1097


>gi|312864545|ref|ZP_07724776.1| DNA polymerase III, alpha subunit [Streptococcus downei F0415]
 gi|311099672|gb|EFQ57885.1| DNA polymerase III, alpha subunit [Streptococcus downei F0415]
          Length = 1035

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/1026 (29%), Positives = 496/1026 (48%), Gaps = 103/1026 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  +   + YS ++  ++L + + +        + I D +NL+ A  F+ +A  AG+Q I
Sbjct: 2    FAPIDTKTVYSFMDSLVNLKSYVKRAKELGYSHLGIMDQDNLYGAYHFAVQAKEAGLQAI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +LD  + D   +  +  +               +GY+ L++L +        K S  
Sbjct: 62   VGLELDFRLADESLLKVKLLSL------------DTQGYRNLLKLSTL-------KMSDG 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L+ L      G+ ++     G                          D L +      
Sbjct: 103  LDLTDLPNYLN-GVALIIPYFEG-------------------------LDSLSL------ 130

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             +D Y    +      ++ P++  +   +  E D +   VL A+  +  +  +D   V  
Sbjct: 131  PFDYYIGVGLDSPERAYKKPILPLHTVRYYEEADRQTLQVLHAIRDNLPL--RDVQPVPA 188

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              YL++  EM   F +  PEAL+N   +    S+    H   LPRF      +  KE   
Sbjct: 189  GQYLRSCQEMQEAFEERFPEALKNLEALLAPISYHFD-HQLKLPRF------NRDKEAVL 241

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ELR  A AGL+         K   A  Y++RLD EL  I +M F  YFLIV D +++ + 
Sbjct: 242  ELRELAEAGLKE--------KCLLASTYQERLDKELATIHQMGFDDYFLIVWDLLRFGRS 293

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             +  +G GRGS AGS+ AY L IT IDP++ +LLFERFLN +R SMPD DID     R E
Sbjct: 294  RHYYMGMGRGSAAGSLVAYTLDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYRSE 353

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             + YV+++YG    AQI+T+ +  AK A+RDV +       ++  + + I          
Sbjct: 354  FLHYVRDRYGSRHSAQIVTYSTFGAKQAIRDVFKRFGAAEYELTNITRKIGF---RDDLA 410

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A   +  FR+   +     +   I+QK+EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 411  SAYEKNLSFRQMINSKEEYRKAFAIAQKIEGQPRQTSIHAAGIVMSDDDLTNHIPL--KS 468

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT + + +     ++G+++D+  I  +D  T
Sbjct: 469  GEDMMITQYDAGAVEANGLLKMDFLGLRNLTFVQRMAEKLAEEKGIQLDIRSIDLEDPGT 528

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  RK G+
Sbjct: 529  LALFAAGRTKGIFQFEQAGAINLLKRIKPAKFEEIVATTSLNRPGASDYTENFIRRKYGQ 588

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E I  I PL+ P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK + EM K 
Sbjct: 589  EAIDLIDPLVAPILEGTYGIMLYQEQVMQIAQVFAGFTLGKADLLRRAMSKKNQAEMQKM 648

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  F+ GA   G + T A  +FE +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 649  EADFMQGAKALGRNLTTAKELFERMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPSIFY 708

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA Q + ++   S+NT     K+ D  IY  +  +KG+   
Sbjct: 709  DVMLNYSSPD------YISDALQADFKVGSLSINTVPYTDKISDGIIYMGMKNLKGLPRD 762

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E     PF S+EDF +R+         +  L+  G  D F  +R ++ ++L+++
Sbjct: 763  LAYWIIETR---PFSSIEDFLTRLPENYQKSDYIRPLIQIGLFDQFEPNRRKVEENLESL 819

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++FA     +       +    + S +++ E + LG   S HPL
Sbjct: 820  FTFV--------NELGSLFADSSYNWL------EVEDYSPSQKYDLEMQWLGVGISPHPL 865

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                   R+     ++E V       +R+   + + +  +T+ KG ++ +V+ ++  ++ 
Sbjct: 866  VGLAKE-REGTFIPFDELVT---NEQVRVLGQIEAVRVIRTKSKGQQMAFVSLTDTKQKL 921

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 922  DVTVFP 927


>gi|306833377|ref|ZP_07466504.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus bovis
            ATCC 700338]
 gi|304424147|gb|EFM27286.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus bovis
            ATCC 700338]
          Length = 1035

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/1026 (28%), Positives = 491/1026 (47%), Gaps = 103/1026 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   +    +     + I D +NL++A  F ++A    +QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLEGYVKAAKSLGYQTVGIMDKDNLYAAFHFIEEAKKQSLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L   +++ L +             + LL     GY+ L+++ S+            
Sbjct: 62   VGLELSFAVEETLSLK------------LYLLAQDTTGYKNLMKISSKQMSSG------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L  L    T   I++                 +  E   L F        Y+ +  + 
Sbjct: 103  IQLGELFNYLTGVAIVVP--------------YFEELEALSLPFD------YYIGVDVNS 142

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                            +E P+       +    + EA  +L A+  +  +S KD P    
Sbjct: 143  PQ------------KAYEKPIFPLYTVRYFETNEVEALHMLHAIRDN--ISLKDAPPAPQ 188

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               L     +   F +  P+ALEN  ++     +        LPRF      + QK  + 
Sbjct: 189  GQNLLACDILTQAFRETFPQALENQEKLISNIHYEFDTDL-KLPRF------NRQKLAQE 241

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL  +  AGL         AK      Y++RL+ EL++I +M F  YFLIV D +++ + 
Sbjct: 242  ELIERTEAGLR--------AKNLWLPAYQERLEKELSIIHKMGFDDYFLIVWDLLRFGRS 293

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            +   +G GRGS AGS+ +YAL IT IDP++ +LLFERFLN +R SMPD DID     R E
Sbjct: 294  HGYYMGMGRGSAAGSLVSYALDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYRSE 353

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             + YV+++YG    AQI+TF +  AK A+RDV +    P  ++  + K I          
Sbjct: 354  FLHYVRDRYGSLHSAQIVTFSTFGAKQAIRDVFKRFGAPEHELTNITKKISFRDTLT--- 410

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                 +  FR+   +     +   I++++EG  R  S HAAG+V+ D  L++ +P+    
Sbjct: 411  SVYDKNLSFRQIINSKIEYQKAFAIAKRIEGNPRQTSIHAAGVVMSDDNLTEHIPL--KA 468

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D+ +TQ++ + +E  GL+K DFLGL+ LT +Q+  + +A+   V +D+  I  +D +T
Sbjct: 469  GEDMMITQYDAQAVEANGLLKMDFLGLRNLTFVQRMQEKVAKDYGVTIDIKSIDLEDKKT 528

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ +QP   EDI+A  SL RPG  D    +  R+ G+
Sbjct: 529  LELFAAGKTKGIFQFEQAGAINLLKRIQPCRFEDIVATTSLNRPGASDYTENFIKRRFGQ 588

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++  I PL+  +L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  ++M K 
Sbjct: 589  EEVDLIDPLVASILEPTYGIMLYQEQVMQIAQIYAGFTLGKADLLRRAMSKKKVDDMQKM 648

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  F+ GA + G     A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 649  ESDFLEGAQQLGRPLEAAKDLFSRMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 708

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA     ++    +NT   + K+ D  IY  L  ++GV   
Sbjct: 709  DIMLNYSSAD------YITDALDSQFKVKKIDINTVPYNNKISDGYIYLGLKNLRGVPRD 762

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
                I+E   ++PF+S+EDF +R+        ++  LV  GA D F  +R +++++L+ +
Sbjct: 763  LCYWIIE---NRPFNSIEDFLTRLPENYQKMDMITPLVEVGAFDKFDRNRRKIIENLEPL 819

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++FA    ++ +           ++ ++  EQ +LG   S HPL
Sbjct: 820  FIFV--------NELGSLFADTSYSWIET------EDYPNAEKYRLEQSLLGVGISPHPL 865

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   KG+             +   +   +  +T+ KG ++ +++ ++  K++
Sbjct: 866  L----EIARQSTKGFTALADLQENTEATILVELNQIRVIRTKTKGEQMAFLSVTDTQKKF 921

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 922  DVTLFP 927


>gi|21910450|ref|NP_664718.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS315]
 gi|28896025|ref|NP_802375.1| DNA polymerase III DnaE [Streptococcus pyogenes SSI-1]
 gi|25452930|sp|Q8K7A1|DPO3A_STRP3 RecName: Full=DNA polymerase III subunit alpha
 gi|21904649|gb|AAM79521.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
            MGAS315]
 gi|28811275|dbj|BAC64208.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
            SSI-1]
          Length = 1036

 Score =  715 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1026 (29%), Positives = 507/1026 (49%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EG+ ++                            K + D L V    + 
Sbjct: 102  LHMDYLCQ-HLEGIAVIIP-------------------------SKGWSDTLVVPFDYYI 135

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D+Y +   +  +    +PL       + +++D E   +L A+  +  +++   P V  
Sbjct: 136  GVDQYTDLSHMD-SKRQLIPL---RTVRYFAQDDMETLHMLHAIRDNLSLAET--PVVES 189

Query: 251  DHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D  L +  ++ + +    P+AL+N  ++     +    +   LP F      +  K  + 
Sbjct: 190  DQELTDCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNL-KLPHF------NRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL+    AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQELTEAGLKE--------KGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 412  TVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPL--KS 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHET 608
              D+ +TQ++   IE  GL+K DFLGL+ LT +QK  + +A+      D++ I  +D +T
Sbjct: 470  GDDMMITQYDAHAIEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  LALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K 
Sbjct: 590  EKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQIYAGFTLGKADLLRRAMSKKNLQEMQKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  EEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M     +      +  DA + + Q+   ++N+     K+  ++IY  L  IKG+   
Sbjct: 710  DIMMNYSSSD------YITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E    +PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +LD +
Sbjct: 764  FAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNLDGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++F+    ++ D          +++ ++  EQ ++G   S HPL
Sbjct: 821  LVFV--------NELGSLFSDSSFSWVDA------KDYSATEKYSLEQEIVGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++ +   +   + S +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  ----IDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|315604150|ref|ZP_07879216.1| error-prone DNA polymerase [Actinomyces sp. oral taxon 180 str.
            F0310]
 gi|315313856|gb|EFU61907.1| error-prone DNA polymerase [Actinomyces sp. oral taxon 180 str.
            F0310]
          Length = 1096

 Score =  715 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/1096 (26%), Positives = 472/1096 (43%), Gaps = 117/1096 (10%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +   +     +  L  HS++S LEG     +++++ A     A+AI D + ++S ++ + 
Sbjct: 1    MVGAVFNERRYAELHAHSAFSFLEGTDEPASMVEEAARLGLDALAILDVDGMYSTVQTTV 60

Query: 61   KACAAGIQPIIG------CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA--EGYQRL 112
             A   G+  I G            +      T  G  P    P I L V TA   GY  L
Sbjct: 61   AARRCGLPVIYGAELTLGSNALRSILPGSCGTGWGLPPGAEDPGIRLPVLTASPTGYANL 120

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
            +  +S   L  +G++S    L  +   G+ GL +LTGG+ GP+ RA        A + + 
Sbjct: 121  VGAMSERALATRGERSPTHSLDDVGGAGS-GLRVLTGGARGPLMRALRAGGPVWARRVVR 179

Query: 173  TFKKLF-GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
               ++   D + +  Q   G  +     +  LA      LVAT  +   S       DVL
Sbjct: 180  ALSEVCGADNVLIEWQAAAGDGQEVGDVLADLARQTGTRLVATTGARMSSPSKQALGDVL 239

Query: 232  MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
             A    + + + +        +L++  EM  +     E+LE+  ++A   +F L++ AP 
Sbjct: 240  TATRLRSSLEEANAHLGAHRAFLRSAREMAHLHRSHLESLEHACDVAADAAFDLRLVAPK 299

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            LPR    +        +  L +    G + R                + +D EL+VIAR+
Sbjct: 300  LPRTRVPDG----HTNDTWLAHLTHQGAQQRYGT-----RAQHPRAWETIDHELDVIARL 350

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F+GYFLIV + + +  +  I +  GRGS A S   Y L IT +D +R +LLFERFL+  
Sbjct: 351  GFAGYFLIVKEIVDFCAERGI-LCQGRGSSANSAVCYCLGITAVDAVRHNLLFERFLSDA 409

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+D    RR+EVI++V + YG  R AQ+    + + ++A+RD  RAL  P   
Sbjct: 410  RSGPPDIDVDIEACRREEVIQHVYSTYGRNRAAQVANVITYRPRSAMRDAARALGYPAGA 469

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                 +     P                           + E +  L  L RH   H+ G
Sbjct: 470  AQAWSRGKGQTPT-------------------------LVREAADALARLPRHMGIHSGG 504

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD---- 587
            +V+ D+P+S++ P+    R    V Q++ +    AGL+KFD L L  LT L+ + D    
Sbjct: 505  MVLTDQPVSRICPVRWAAREGRTVLQWDKEDCADAGLVKFDLLSLGMLTALRIAFDELNG 564

Query: 588  --------------------FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
                                 L +R + + L  +P +D   Y LL    T+G+FQ+ES  
Sbjct: 565  SNRSADTLGRAPLRGWAPRPLLGRREMPLGLHTLPEEDPRVYDLLCAADTVGVFQVESRA 624

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKET 685
                L  ++P C  DI+  V+L RPGPI    +  Y  R+ G+E +  +HPL++P L++T
Sbjct: 625  QMNTLPRLKPRCFYDIVVEVALIRPGPIQGRAVNPYLRRRAGREAVTYLHPLLEPALRQT 684

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKT 744
             GV ++QEQ+M+IA   +G S ++AD LRRAM  K+  E M+  +   ++G +  GI   
Sbjct: 685  LGVPLFQEQLMRIAADAAGLSGAQADQLRRAMGAKRSSERMEALRADLMTGMAARGIDAP 744

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
                IF  L  FAD+GF +SH+ ++A I Y +AW+K H P  F AA +  +         
Sbjct: 745  TRERIFGQLKGFADFGFPESHSFSFAHIVYASAWLKVHAPEHFYAAILASQPMGFYSPAT 804

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRI----------------------------- 835
              QDAR+  ++++ PSVN   +D  V                                  
Sbjct: 805  LVQDARRHGVRVLAPSVNDSLLDASVERGATSASSYRAGRSDPLPSRQIVPVDVDPSLAV 864

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L+ ++G+G   A  I+EA  +  F+S  D   R   ++ +   +E L  +GAL+C G
Sbjct: 865  RIGLSQVRGLG-KAAERILEARKEGAFESQADLARRAHLREGD---MEKLALSGALECLG 920

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R + + +                +     F       +   TL   S         ++
Sbjct: 921  VGRREGMWA------AGALAVPEADSAQWQPFLPGTEVGARPPTLPSPS---RVELMRSD 971

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
             R +G     HP    +  L   G+    E    + G  + +A +V  +Q+  T  G+ +
Sbjct: 972  MRTMGLTPGEHPFSSVRGELPD-GVLKARELGEHLDGRIVDVAGVVTHRQRPHT--GAGV 1028

Query: 1016 GWVTFSEPAKEYEANF 1031
             +++  +       + 
Sbjct: 1029 TFLSLEDETGFVNVSI 1044


>gi|254230313|ref|ZP_04923701.1| DNA polymerase III, alpha subunit subfamily, putative [Vibrio sp.
            Ex25]
 gi|262393787|ref|YP_003285641.1| DNA polymerase III subunit alpha [Vibrio sp. Ex25]
 gi|151937173|gb|EDN56043.1| DNA polymerase III, alpha subunit subfamily, putative [Vibrio sp.
            Ex25]
 gi|262337381|gb|ACY51176.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25]
          Length = 1024

 Score =  715 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/1038 (23%), Positives = 446/1038 (42%), Gaps = 85/1038 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--KACAAGI 67
            S+  L   S++S L GA     ++ + A  +  A+AITD  ++   ++     +     I
Sbjct: 2    SYAELFCQSNFSFLTGASHAEELVLQAAFYRYQALAITDECSVAGVVKAHATIEQHKLDI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G    ++ +                  IVLL    + Y  L  +++      +   
Sbjct: 62   KQIVGSMFWLNDE----------------CQIVLLCPCRKAYAELCRIITNARRRSEKGN 105

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                      ++    L+ +       +      +             +   +RL+V +Q
Sbjct: 106  Y---------QLFEWDLMSIRHCLVLWLPTHQESDHYWG-----RWLNQHHANRLWVAIQ 151

Query: 188  RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH    D    +   QLA+  +LP+ A    L    E      VL A+ H   V +    
Sbjct: 152  RHLSNNDTEYIAHCEQLAHEFQLPITACGGVLMHDVERLPLQHVLTAIKHRCSVDKLGFD 211

Query: 247  RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R++  +  L+   ++V I+   PE LE +  IA  C F L       P  +  +      
Sbjct: 212  RISNTERALRPFKKLVRIYK--PEWLEESTYIADLCEFKLSDLKYEYPTELIPDG----Y 265

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              ++ LR     G ++R  +G  A      +  Q ++ EL +I  +K+  YFL + D + 
Sbjct: 266  TPDSYLRMLVERGKKLRFPEGVPA------EVNQTIENELALIQELKYHYYFLTIHDIVM 319

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK+  I    GRGS A SV  Y L IT +DP + ++LFERF++ +R   PD D+DF  +
Sbjct: 320  FAKQQGILY-QGRGSAANSVVCYCLEITAVDPRQIAVLFERFISKERKEPPDIDVDFEHE 378

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG ER A   T  S + K+A+R+VG+AL +  +Q+D   K + N    
Sbjct: 379  RREEVIQYIYKKYGRERAALSATVISYRFKSAVREVGKALGIEETQLDFFIKNV-NRRDR 437

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                QA   +   +   L      + +++  ++ G  RH S H  G VI   PL +LVP+
Sbjct: 438  SQGWQAQVIELGLQPESLKG---QQFIQLVNEIIGFPRHLSQHVGGFVISSGPLYELVPV 494

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA---QRGVKVDLSLIP 602
                  D  + Q++   +E   L+K D L L  L  ++K    +    QR + +      
Sbjct: 495  ENASMEDRTIIQWDKDDLESLKLLKVDVLALGMLNAIRKCFQLVEKHHQRSLSISEITRR 554

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             DD   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI  D +  
Sbjct: 555  QDDPHVYGMIQKADTIGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGPIQGDMVHP 614

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            +  R++ KE +      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM   
Sbjct: 615  FLKRRDQKEPVSYPSEEVKSVLERTMGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMASW 674

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K   ++ K + + I+G  + G     A  IF+ +  F +YGF +SH+A++AV++Y +AW+
Sbjct: 675  KKNGDLAKFRPKLINGMQERGYDLAFAERIFDQICGFGEYGFPESHSASFAVLAYCSAWL 734

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNR 834
            K +YP EF  A +  +        +  QDAR+  ++++P  VN       +     G   
Sbjct: 735  KYYYPAEFYTALLNSQPMGFYSPSQLVQDARRHGVEVLPVCVNHSKYQHHLVSRPNGRLG 794

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +      +KG    +A+ ++E      + S+++    V     +R  +E L  A A    
Sbjct: 795  VQLGFRLVKGFNAESAQRLIERKPLNGYRSIQE----VKQILRSRSDIELLASANAFQAL 850

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R     +                   +++         ++ ++   +  +       
Sbjct: 851  SGNRYNARWA-----------------AMDSLSDLPLFHKVEEPSVSYQTQPSEYENLIE 893

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +    G   S HP+ + +   +        +       + + +  +V  +Q   T  G  
Sbjct: 894  DYASTGLSLSRHPIKLLEETGKLPHFTRMRQLAEKPHRSLVTVVGVVTGRQSPGTAAG-- 951

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + + T  +         +
Sbjct: 952  VTFFTLEDDTGNINVVVW 969


>gi|71903627|ref|YP_280430.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS6180]
 gi|71802722|gb|AAX72075.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS6180]
          Length = 1036

 Score =  715 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/1027 (29%), Positives = 513/1027 (49%), Gaps = 104/1027 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EG+ ++                            K + D L V    + 
Sbjct: 102  LHMDYLCQ-HLEGIAVIIP-------------------------SKGWSDTLVVPFDYYI 135

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D+Y +   +  +    +PL       + +++D E   +L A+  +  +++   P V  
Sbjct: 136  GVDQYTDLSHMD-SKRQLIPL---RTVRYFAQDDMETLHMLHAIRDNLSLAET--PVVES 189

Query: 251  DHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D  L +  ++ + +    P+AL+N  ++     +    +   LP F      +  K  + 
Sbjct: 190  DQELADCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNL-KLPHF------NRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL++   AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQDLTEAGLKE--------KGLWKEPYQSRLLRELVIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I        SL
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKI----GFKDSL 410

Query: 490  QAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              + + S  FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+   
Sbjct: 411  ATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPL--K 468

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHE 607
               D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+      D++ I  +D +
Sbjct: 469  SGDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQ 528

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G
Sbjct: 529  TLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREG 588

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K
Sbjct: 589  QEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQIYAGFTLGKADLLRRAMSKKNLQEMQK 648

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F
Sbjct: 649  MEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVF 708

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
                M     N      +  DA + + Q+   ++N+     K+  ++IY  L  IKG+  
Sbjct: 709  YDIMMNYSSSN------YITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPR 762

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A  I+E    +PF+S+EDF +R   K   +  LE L+  G  DCF  +R +++ +LD 
Sbjct: 763  DFAYWIVE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKIMDNLDG 819

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  +         N+  ++F+    ++ D          +++ ++  EQ ++G   S HP
Sbjct: 820  LLVFV--------NELGSLFSDSSFSWVDT------KDYSATEKYSLEQEIVGVGMSKHP 865

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKE 1026
            L      + +   + +      ++ +   +   + S +  +T+  G ++ +++ ++  K+
Sbjct: 866  L----IDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKK 921

Query: 1027 YEANFFP 1033
             +   FP
Sbjct: 922  LDVTLFP 928


>gi|319442936|ref|ZP_07992092.1| error-prone DNA polymerase [Corynebacterium variabile DSM 44702]
          Length = 1080

 Score =  715 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/1055 (25%), Positives = 452/1055 (42%), Gaps = 110/1055 (10%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +    +  F  L    SY+ L GA   ++++         A+A+ D +  + A  F+  A
Sbjct: 53   ETASSTTPFAELHAAGSYNFLRGAGEPDDMVATARRLGLTALALVDRDGFYGAARFATAA 112

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G+  + G          L +   G+ P      + +L    EGY+RL  +++  +L 
Sbjct: 113  AEQGMPTVFGA--------ELSLGGTGRAP------LTVLCRGQEGYRRLSHVLTDAHLG 158

Query: 123  DQGKQSVR----ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              G +         L  L        ++L              + ++ A  R++      
Sbjct: 159  TDGHRDKETLTYPDLPTLAAQADGHWLVL------------IDHRNRDAVSRIID--AFG 204

Query: 179  GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
                 + LQ      D  R + +  LA    L  + +  +   +           A+   
Sbjct: 205  TAHCVIELQLTMSPADADRNAALHDLAVARGLREIVSTAATCPTPASSRLAGAKAALHDR 264

Query: 238  TVVSQKDR-PRVTPDHYLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQVHAPILP 293
              V             +L +  EMV++  D   L +A+  +V++A  C+F L + AP LP
Sbjct: 265  LDVHDAAPVTHPLGGSWLHSGEEMVAMAGDCDWLRQAVATSVDVAAECTFTLNLVAPELP 324

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
                 E       +   L      G E R    A           + +D EL VI  + F
Sbjct: 325  HADVPEG----YTDMGWLVELTRLGGEERYGTRATNPRA-----WEVIDHELEVIEGLGF 375

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFLIV D + + +++ I    GRGS A S   +AL IT++D +   LLFERFL+P+R 
Sbjct: 376  PGYFLIVHDIVDFCRRSGI-FCQGRGSAANSAVCFALGITNVDAVAADLLFERFLSPERD 434

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D+D    RR+EVI+YV  +YG +  AQ+    + + K ALRD  RAL     +VD
Sbjct: 435  GPPDIDLDIESTRREEVIQYVYRQYGRDNAAQVANVITYRRKGALRDAARALGHDPGRVD 494

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
               + + + PA                          + +++ +L    RH   H+ G+V
Sbjct: 495  AWSRRVEDPPAV-------------------------VTDLASQLIDQPRHLGIHSGGMV 529

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            I DRP++ +VP+    ++D  V Q++       GL+KFD LGL  L  L   +D + +  
Sbjct: 530  ICDRPVADVVPVEWARKTDRSVVQWDKDDCAAVGLVKFDLLGLGMLEALHHCVDLVEETT 589

Query: 594  -VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
              +V+L  +   D E Y +L+    +G+FQ+ES      L  ++P    D++  VSL RP
Sbjct: 590  GSRVELWQLTPTDPEVYAMLSRADAVGVFQVESRAQLATLPRLKPRTFYDLVVEVSLIRP 649

Query: 653  GPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GPI       Y  R+NG+E++   HP ++P+L  T G+ ++QEQ+MQ+A + +G+S +EA
Sbjct: 650  GPIQGGSVHPYIRRRNGEEEVTYDHPCLEPVLARTLGIPLFQEQLMQLAVVAAGFSPAEA 709

Query: 711  DVLRRAM-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            D LRRAM  K+  E+M   + RF++G ++ NG+   +A  ++E +  FA YGF +SHA +
Sbjct: 710  DTLRRAMGSKRSPEKMAAMRSRFLAGCAELNGLVGEVAERLWEKIIAFASYGFPESHAQS 769

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +A + Y +AW K H+P EF  A +  +       +    DAR+  + ++P  VN   V+ 
Sbjct: 770  FASLVYFSAWFKCHHPAEFCVALLRAQPMGFYSPQSLISDARRHGVPVLPVDVNVSGVEA 829

Query: 829  KVGD-------NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRR 880
             V           I   LA+++G+G+  A  ++EA      F ++ D         L   
Sbjct: 830  GVEKVEDAGDAWAIRPGLASVRGLGSEAASDLVEARGRVGMFRTVADLSR---EAGLGVD 886

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             + +L  AGA D  G +R Q           A W       +   +      + +    L
Sbjct: 887  RVVALARAGACDSLGLTRRQ-----------AVWAAGQAATERPGML--PGTSVASTPAL 933

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK----MGIKGYEESVATIRGNNIR 996
               S    +     +    G    GHP+ + +  L        +      ++   G  IR
Sbjct: 934  PGMSAFELA---AADIAATGVTTDGHPVRLLRERLDAWPGPFPVVPASSLLSVEDGRRIR 990

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +A +V  +Q+  T  G  + ++   +         
Sbjct: 991  VAGVVTHRQRPMTAGG--VTFLGMEDETGLVNVMV 1023


>gi|94988724|ref|YP_596825.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS9429]
 gi|94992547|ref|YP_600646.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS2096]
 gi|94542232|gb|ABF32281.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS9429]
 gi|94546055|gb|ABF36102.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS2096]
          Length = 1036

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/1026 (28%), Positives = 507/1026 (49%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EG+ ++                            K + D L V    + 
Sbjct: 102  LHMDYLCQ-HLEGIAVIIP-------------------------SKGWSDTLVVPFDYYI 135

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D+Y +   +  +    +PL       + +++D E   +L A+  +  +++   P V  
Sbjct: 136  GVDQYTDLSHMD-SKRQLIPL---RTVRYFAQDDMETLHMLHAIRDNLSLAET--PVVES 189

Query: 251  DHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D  L +  ++ + +    P+AL+N  ++     +    +   LP F      +  K  + 
Sbjct: 190  DQELADCQQLTAFYQTHCPQALQNLEDLVSGIYYDFDTNL-KLPHF------NRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL++   AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQDLTEAGLKE--------KGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 412  TVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPL--KS 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+      D++ I  +D +T
Sbjct: 470  GDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  LALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I  +L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K 
Sbjct: 590  EKIDLIDPVIASILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  EEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M     +      +  DA + + Q+   ++N+     K+  ++IY  L  IKG+   
Sbjct: 710  DIMMNYSSSD------YITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E    +PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +LD +
Sbjct: 764  FAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNLDGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++F+    ++ D          +++ ++  EQ ++G   S HPL
Sbjct: 821  LVFV--------NELGSLFSDSSFSWVDT------KDYSATEKYSLEQEIVGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++ +   +   + S +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  ----IDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|312867739|ref|ZP_07727945.1| DNA polymerase III, alpha subunit [Streptococcus parasanguinis F0405]
 gi|311096802|gb|EFQ55040.1| DNA polymerase III, alpha subunit [Streptococcus parasanguinis F0405]
          Length = 1033

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/1030 (29%), Positives = 508/1030 (49%), Gaps = 115/1030 (11%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   S Y+ +E  +++ + +    +    A+ I D +NL+ A EF +   A  ++P++
Sbjct: 3    AQLDTKSVYTFMESLVTIKDYVHVAKSMGYDALGIMDVDNLYGAYEFIEACQAHNLRPLV 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++             G           ++  T +GYQ L+++ +   +     +    
Sbjct: 63   GLEI-------------GLEVDNETIPFRMMALTTKGYQNLMKMSTVKMMGKNNWE---- 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             +  L E     +I+    +SG +               L  F  +F D           
Sbjct: 106  DVKHLTE--GVAVIVPAPFASGDLPLG------------LDYFIGVFADTPVQEFSH--- 148

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                             LPL   +   F    D EA  +L A+  +  +++     + P 
Sbjct: 149  ---------------LVLPL---HTVRFFEAGDVEAMQMLAAIKDNQSLTETG--PIDPT 188

Query: 252  HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              LK   ++ + F++  P+A+ N  ++ +   + +      LPRF      + QK    E
Sbjct: 189  TVLKTPQDLKNDFAERFPQAITNLEKLVQGIQYDIDTQL-KLPRF------NPQKPAVEE 241

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A AGL        + K   +  Y++RL+ EL++I +M F  YFLIV D +++ +  
Sbjct: 242  LRKLAQAGL--------LRKNLTSPVYQERLEHELDIIHQMGFDDYFLIVWDLLRFGRSQ 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ AYAL IT IDP+  +LLFERFLN +R +MPD DID     R E 
Sbjct: 294  GYYMGMGRGSAVGSLVAYALGITGIDPVEKNLLFERFLNVERYTMPDIDIDIPDIYRPEF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV+++YG    AQI+TF +  AK A+RDV +   +P  ++  + K I           
Sbjct: 354  IRYVRDRYGSYHAAQIVTFSTFGAKQAIRDVFKRFGVPEYELTSITKRIGYRDTLTT--- 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   +  FR+   +    +R  EI++++EG  R  S HAAG+V+ D+ L+  +P+     
Sbjct: 411  AYEQNLAFRQVIHSRAEFERGFEIAKRIEGQPRQTSIHAAGVVMSDQDLTDHIPL--KYG 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
             D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + +  +   ++ +  I  +D ET 
Sbjct: 469  EDMFVTQYDAHAVEANGLLKMDFLGLRNLTFVQKMKEAVYEKYQEEIVIEAIDLEDPETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E +G  + L  ++P+  E+++A  SL RPG  D I  +  RK+G+E
Sbjct: 529  ALFAAGDTKGIFQFEQAGAIRLLRRVRPNHFEEVVATTSLNRPGASDYIDNFVKRKHGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  + P I+ +L+ T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK   EM K +
Sbjct: 589  KVEILDPAIEEILRPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKNAAEMHKME 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F++GA K G ++  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F  
Sbjct: 649  DDFVAGALKLGHTEEKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQMAYFKVHYPDVFFD 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA QF+ ++ P S+NT     K  D +IY  +  IKG+    
Sbjct: 709  VMLNYSSSD------YLADALQFDFKVAPLSINTIPYRDKFQDRKIYLGMKNIKGLPRDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I++   ++PF+S+EDF  R+ ++     +L  LV  G  D F  +R ++L +L N+ 
Sbjct: 763  AYWIID---NRPFESVEDFILRLPNQYHKLPLLTPLVELGLFDIFEKNRRKVLHNLPNLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL- 968
             +A        ++  ++F +   ++++          + + ++E E+ ++G   S HPL 
Sbjct: 820  VFA--------DELGSLFGNSNYSWTEA------EDFSQAEKYEKEEAIIGIGLSTHPLV 865

Query: 969  -----DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
                   Y+       I+   +    ++G   R+   V + +  +T+ G  + ++  S+ 
Sbjct: 866  AIGQTSPYE-------IQPISQL---VQGEQARILIEVQNIRTIRTKSGDLMAFLQVSDT 915

Query: 1024 AKEYEANFFP 1033
             K+ +   FP
Sbjct: 916  KKKLDVTLFP 925


>gi|167568660|ref|ZP_02361534.1| error-prone DNA polymerase [Burkholderia oklahomensis C6786]
          Length = 844

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/858 (27%), Positives = 391/858 (45%), Gaps = 42/858 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S + ++++  A     IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSADELVERAKAHGYRGIAITDECSLAGAPRMHVAANAEGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G   D+   D       G  P P    +VLL    EGY  L EL+S    +D  K +
Sbjct: 69  LVVGAYFDVTPDD----VAPGHDPGPGAFGLVLLARNREGYGNLSELISW-RRMDAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            R+    L    +    +        I    +   + + + +L  F  LFG+R  + L Q
Sbjct: 124 YRLTPQMLAAPPSTFAHLRGVPDCFAILVPTYPARADMLDAQLAWFDALFGERARLGLVQ 183

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D     ++        + +VA  +    +       D + A+     +++     
Sbjct: 184 LQRALDGAHREEIRAAGERRGMRIVALGDVTMHARSCKPLQDAMTAIRLGMPIAECGYAL 243

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L+ R  +  +F    EA+  T  I   C F L       PR +  E       
Sbjct: 244 APNAEQHLRLRQRIAQLFP--AEAIAETCRILDACDFSLDELRYEYPRELVPEG----HT 297

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + LR +  +G   R   G           ++R+ +EL +IA +K+  YFL V D +Q+
Sbjct: 298 PTSYLRRETWSGAHRRYPDGV------PDTVQERIRYELELIAELKYEPYFLTVYDIVQY 351

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A+  +I +  GRGS A SV  + L +T++ P + SLLFERF++ +R   PD D+DF   R
Sbjct: 352 ARSRDI-LCQGRGSAANSVVCFCLGVTEVHPEKSSLLFERFISRERGEPPDIDVDFEHQR 410

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 411 REEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 470

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             L                P +    E++ +L G  RH S H+ G VI    L++LVP+ 
Sbjct: 471 DLLARFESVG----LDPDTPLIRAWAELAARLLGFPRHLSQHSGGFVISRGKLTRLVPVE 526

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDLSLI 601
                   V Q++   +E  GL+K D L L  L+ L ++ D +      + G    +  I
Sbjct: 527 NAAMEGRRVIQWDKNDLEALGLMKVDVLALGMLSALHRAFDMITAWRGRRDGQPFGMQSI 586

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--V 659
           P DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI      
Sbjct: 587 PQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRDYYDLVIEVAIVRPGPIQGGAVH 646

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            Y  R+ G E +      + P L+ T+GV I+QEQVMQIA + +G++  EAD LRRAM  
Sbjct: 647 PYLKRRQGLEPVTYPKDDLKPALERTRGVPIFQEQVMQIAIIAAGFTPGEADALRRAMAA 706

Query: 720 -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K K  +++ + + + G  +       A  IFE +  F +YGF +SHAA++A + Y ++W
Sbjct: 707 WKRKGNLEQYRRKIVDGMRERDYPPEFAEQIFEQIKGFGEYGFPESHAASFAHLVYASSW 766

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------- 830
           +K H P  F+AA +  +        +  QDA++  + ++P        D  +        
Sbjct: 767 LKCHEPAIFVAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATASGWDASLEAQPGAAP 826

Query: 831 --GDNRIYYSLAAIKGVG 846
             G   +   L+ ++G+G
Sbjct: 827 PDGQPAVRLGLSLVRGLG 844


>gi|167736963|ref|ZP_02409737.1| error-prone DNA polymerase [Burkholderia pseudomallei 14]
          Length = 890

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/903 (28%), Positives = 406/903 (44%), Gaps = 49/903 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            R+    L         +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 124 YRLTPRMLAAPPRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLVQ 183

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D     QV        + +VA  +            D + A+     +++     
Sbjct: 184 LQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHAL 243

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 244 APNGEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----HT 297

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D +++
Sbjct: 298 STSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVKY 351

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   R
Sbjct: 352 ARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQR 410

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 411 REEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 470

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             L   A      E     P +    EI+ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 471 DLLARFASVGLDPEV----PLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVE 526

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                   V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 527 NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 586

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
            IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 587 HIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 646

Query: 659 -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 647 VHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 706

Query: 713 LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           LRRAM   K K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A 
Sbjct: 707 LRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAK 766

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
           ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 767 LAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASLE 826

Query: 831 ---------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                    G   +   L+ ++G+G   AR I  A A  PF S+++   R   ++ +   
Sbjct: 827 AQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRACLERRDLEA 886

Query: 882 LES 884
           L +
Sbjct: 887 LAA 889


>gi|83943312|ref|ZP_00955771.1| DNA polymerase III, alpha subunit, putative [Sulfitobacter sp. EE-36]
 gi|83845544|gb|EAP83422.1| DNA polymerase III, alpha subunit, putative [Sulfitobacter sp. EE-36]
          Length = 1048

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/1014 (25%), Positives = 446/1014 (43%), Gaps = 77/1014 (7%)

Query: 39   DQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS 98
                A+AITD N+L   +          ++ +            L +  +      +   
Sbjct: 1    MGLNALAITDHNSLAGVVRAYSA-----LKELRRELGADAPLPRLVIGAR-LILRDSDTH 54

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
             V L    E Y RL  L++    L + +     C   L ++         G S   + +A
Sbjct: 55   WVALPHDREAYARLTRLLT----LGKRRAPKGACYLDLPDLVQGC----AGMSLIAVPQA 106

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNS 217
               +S       ++T KK F   +++ +   + G D+        LA+    P+VA  + 
Sbjct: 107  SLKSSQPD----IMTLKKHFPADVFIGVAPRYDGSDQRYFDACATLAHRTAAPMVAVGDV 162

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
            L       +  DVL  + H+  + Q   R     +  LK  ++M  +F+  P AL  T +
Sbjct: 163  LMHHGARRQLADVLTCLRHNITIDQIGTRALPNAEKRLKPEADMKRLFARHPAALRRTTQ 222

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            IA R SF L   +   P  I        +  ++ L   A  GL+VR  +GA A+      
Sbjct: 223  IAARSSFCLSELSYDYPDEIAD-----NETPQDRLARLASEGLKVRYPKGAPARAI---- 273

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               +++ EL ++  + F  YFL V D +Q+A+   I +  GRGS A S+  Y L ITD+ 
Sbjct: 274  --AQMEKELALVKTLDFPAYFLTVHDIVQFARSKGI-LCQGRGSAANSILCYLLGITDVS 330

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            P   +++ ERF++  R   PD D+DF  +RR+EVI+++  KYG  R     T    +++A
Sbjct: 331  PETITMVVERFVSEHRGEPPDIDVDFEHERREEVIQHIYAKYGRHRAGLCATVIHFRSRA 390

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEI 514
            A+ +VG+ + +       L   I        +     D  R ++  L  +DP +   +++
Sbjct: 391  AISEVGKVMGLSKDVTANLSGQIWG------TSNGGPDPERVKQLGLDLSDPRLALTIKL 444

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
              ++ G  RH S H  G VI    L +L P+      D  + +++   I+   ++K D L
Sbjct: 445  IGEIIGFPRHLSQHVGGFVITKGRLDELCPIENAAMDDRTIIEWDKDDIDALNILKVDIL 504

Query: 575  GLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
             L  LT ++KS D +AQ G  K  ++ IP DD +TY +L     +G+FQ+ES      L 
Sbjct: 505  SLGMLTCIRKSFDLIAQHGGKKHSIASIPQDDAQTYDMLGVADAIGVFQVESRAQMNFLP 564

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
             M+P  + D++  V++ RPGPI   +   Y NR+ G E +V     ++ +L +T GV ++
Sbjct: 565  RMKPRELYDLVIEVAIVRPGPIQGGMVHPYINRRQGNEAVVFPSKELEDVLGKTLGVPLF 624

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            QEQ MQIA + +G+  SEAD LRR+M   +    + + +++FI+G    G     A N F
Sbjct: 625  QEQAMQIAVVAAGFLPSEADQLRRSMATFRRMGTIGQLRDKFINGMLARGYENAFAENCF 684

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
              +  F +YGF +SHAAA+A+++Y +AW+K H+P  F    +  +        +  +DAR
Sbjct: 685  SQIEGFGEYGFPESHAAAFAMLAYVSAWLKCHHPAAFACGLLNAQPMGFYAPAQIVRDAR 744

Query: 811  QFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
            + +I++ P  VNT   D  +     G   +      IKG     A  I+ A  +  +   
Sbjct: 745  EHHIEVRPVCVNTSEWDNTLEKRSDGSLALRLGFRQIKGFREEDAGWIVAARGNG-YPDP 803

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
            E    R     L+  VLE L  A A    G  R   L ++  I          + N    
Sbjct: 804  EALWLRA---GLSPAVLERLAEADAYAVLGLGRRDALWAVKAI----------KGNAPLP 850

Query: 926  IFAH---EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
            +F      +G     +TL    +    V    +   +      HP+++ +P +   G+  
Sbjct: 851  LFNDKIEGEGIAEQPVTLPAMHLGQEVV---EDYVAMRLSLKAHPMELLRPAMT--GLTA 905

Query: 983  YEESVATIRG----NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++       G      I +  +V+++Q+  T  G  + ++T  +         +
Sbjct: 906  HDALPEVPLGPMAQRPISVCGLVITRQRPGTASG--VVFLTLEDETGVSNVVVW 957


>gi|284991707|ref|YP_003410261.1| DNA polymerase III subunit alpha [Geodermatophilus obscurus DSM
            43160]
 gi|284064952|gb|ADB75890.1| DNA polymerase III, alpha subunit [Geodermatophilus obscurus DSM
            43160]
          Length = 1268

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/1150 (27%), Positives = 513/1150 (44%), Gaps = 147/1150 (12%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            ++  FVHL V S YS+  GA    +++++ A     A+A+TD + L+ A++F+    AA 
Sbjct: 2    RADPFVHLHVASGYSMQYGANHPADLVERAAEHGMRALALTDRDGLYGAVKFALACRAAD 61

Query: 67   IQPIIGCQLDIDMQ-------------------------------------DNLKMTNQG 89
            ++P+ G  L +                                                G
Sbjct: 62   VRPLFGVDLAVTPSVDTTVPPALAPVVGGAHSAQRARSRRPGAPDDAPGRAGRRSPARGG 121

Query: 90   KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
             +  P +P +  L     G++ L  L +  +L     +   +    L      GL+ L G
Sbjct: 122  ASVDPRLPRVTFLARDGAGWRSLCRLTTATHLRGTRGE--PVSSLALAAEHAPGLVALLG 179

Query: 150  GSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRHRGY-DRYRESQVVQLAYTH 207
              S P+ RA     + VA  RL  ++ +F    L + +  HRG  DR R   +++ A   
Sbjct: 180  PDS-PVGRALAAGRADVASARLAAWRAVFGPGSLVLEVVHHRGRGDRSRAQALLRFAAAE 238

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
             +P V TN   ++   D    DVL A      +  +   R T + +LK+  EM  +  DL
Sbjct: 239  GVPAVLTNAVRYVDALDAPTADVLDAARRLVPLDARHVDRRTAEGHLKSGKEMAEVAEDL 298

Query: 268  P--------EALENTVEIARRCSFILQVHAPILP-RFIEKECDDIQKE----EENELRNK 314
                     + LE T  +A +C+  ++    +   R+ E E      E        LR +
Sbjct: 299  VGPDRDAVLQLLERTARLAEQCAVDVRADLGVGSVRYPELEVVTTPAEQGMGPSAVLRAR 358

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
              AGL  R             +  +RLD EL VI  + +  YFL VAD +   K   +  
Sbjct: 359  CEAGLGRRGMP-------RTAEVARRLDDELEVIDVLGYPSYFLTVADVVDLIKSLRVR- 410

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
               RGSGAGS+  Y L I+D+DP+R+ LL ERFL+P R  +PD DID    RR EV   V
Sbjct: 411  AAARGSGAGSLVTYLLGISDVDPIRYGLLMERFLSPLRHQLPDVDIDVESARRMEVYDAV 470

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
             +++G  RV+ I    + + + A+RDVG AL +P ++VD + K  P+  A+ V   A+ D
Sbjct: 471  LDRFGAHRVSCISMMDTYRVRHAIRDVGAALGLPPAEVDAVAKAFPHIRANQV-HAALKD 529

Query: 495  DSRFREARLADPS------VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                R +RL          +D L ++  +L+GL RH + H  G+++ D  L    P+   
Sbjct: 530  LPELRASRLGSRRGGGTGDLDLLFDLVARLDGLPRHIALHPCGVLLSDATLLDRTPVENS 589

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
                 P++QF+   +E+ GL+K D LG++  + +  +LD +A+  G  VD+  +P DD  
Sbjct: 590  YL-GYPMSQFDKDDVEELGLLKLDLLGIRMQSAIAHALDEVARVDGETVDIDAVPRDDPT 648

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRK 665
            T+ L+ +  TLG+FQ+ES G R+ +    P+  EDI+  +SL+RPGP   D +  +   +
Sbjct: 649  TFELIRSTRTLGMFQIESPGQRELVGKFGPETFEDIVIDISLFRPGPVKSDMVTPFLLAR 708

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG  + V  HP + P L++T GV+++ EQV+QI   ++G  L++AD  RRA+G   +E  
Sbjct: 709  NGWREPVYPHPDLAPYLEQTAGVVVFHEQVLQIVAQMTGCDLAQADEARRALG--DRELH 766

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             + +  F+  A +      +   ++++L  F  +GF K+HAAA+A+ +YQ+AW+KTH+P 
Sbjct: 767  PEVRAWFVPEAVQR-YPVEVVEQVWQVLVAFGSFGFCKAHAAAFALPTYQSAWLKTHHPA 825

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-------------- 831
             FLA  +T +     K +    DAR F ++++   VN     ++V               
Sbjct: 826  AFLAGVLTHDPGMYPK-RLILDDARNFGVRVLGLDVNASAGTYRVERLEADPDAGPEVET 884

Query: 832  ------------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                                 I  SL+ +KG+       ++   A +P+ SL DF  R  
Sbjct: 885  AGGWARPSWMPVAMPDPSRYGIRLSLSDVKGICAEEVERVV---AGQPYRSLTDFWHRAS 941

Query: 874  SKKLNRRVLESLVFAGALDCFGY------------------SRMQLLQSLDNIQKYAQWV 915
                +R V+E LV AG  D                      +R  LL  +  + ++++  
Sbjct: 942  V---SRPVVERLVLAGGFDSLYGFGVRDREAGRPTRGRRQVTRRDLLLQIGELDRWSRSG 998

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVE-------------NSSVRFENEQRVLGFY 962
             K  T    ++          ++  E+                   +     E  VLG  
Sbjct: 999  AKAATTGQLSLDLMGLEMEGTELPGEEAEEPGLGWAEGSGLPELTDAELVRAELEVLGLD 1058

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             S H +D Y+P L  +G     E + +  G  + +A + V+ Q    R G R+ +VT  +
Sbjct: 1059 ASRHVVDFYRPFLAAIGAVLAGELLGSRSGAEVLVAGVKVATQTPPIRSGRRVVFVTLDD 1118

Query: 1023 PAKEYEANFF 1032
                 ++ FF
Sbjct: 1119 GTGCTDSTFF 1128


>gi|332139446|ref|YP_004425184.1| error-prone DNA polymerase [Alteromonas macleodii str. 'Deep
            ecotype']
 gi|327549468|gb|AEA96186.1| error-prone DNA polymerase [Alteromonas macleodii str. 'Deep
            ecotype']
          Length = 1029

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/1036 (24%), Positives = 444/1036 (42%), Gaps = 79/1036 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQ 68
            +  L   S YS L GA S   ++   +     AIAITD  ++   +    +    G  I+
Sbjct: 3    YSELFCQSHYSFLCGASSPAELVTTASFLGYEAIAITDECSMAGVVRAFDEITHQGLPIK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G                    F    S VLL      Y  L  +++      + K  
Sbjct: 63   LIVGSYFI----------------FDKTLSFVLLCPNKAAYSELCRIITNARRRSE-KGE 105

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++    L+ I     I L    SG ++           +      +K      ++  QR
Sbjct: 106  YQLAEWDLRTIRHCKFIWL---PSGEVN---------EDKYWAQWLQKHPNIDAFIGAQR 153

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
               G D +R +    L  T+  P++A   +L    +      +L      T V +  R  
Sbjct: 154  LLDGRDHHRFAHYNHLQSTYAFPVIACTGALMHHADRLPLQHILHTTKVHTTVHEIGREA 213

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            ++  +  L+   ++  ++ +  + L NT  +A++ +F L+      P  +  E       
Sbjct: 214  LSNAERSLRTTHKIKKLYPE--KWLANTHSLAQQFTFSLEELRYQYPAELVPEG----YT 267

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR +   G+++R  +G  +      + RQ ++ EL +IA  ++  +FL + D +Q+
Sbjct: 268  PTSYLRERVEEGIKIRFPEGITS------EIRQTIEKELRLIAEQEYEYFFLTIYDIVQF 321

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+  I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF   R
Sbjct: 322  AKQQRILY-QGRGSAANSVVCYCLEITAVDPRQISVLFERFISKERNEPPDIDVDFEHQR 380

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+E+I+Y+  KYG ER A   T    + K+A +DVG+AL    SQ+D + K I    +  
Sbjct: 381  REEIIQYIYKKYGRERTAIAATVICYRFKSAFKDVGKALGFSESQLDFVVKQINRRDSVI 440

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                 +AD          +  V +L+ +++ L G  RH S H  G VI   PL  LVP+ 
Sbjct: 441  PWKSQLADLG----LNPEEKRVQQLISLTEALLGTPRHLSQHVGGFVISAGPLYDLVPVE 496

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD---LSLIPF 603
                    + Q++   IE  GL+K D L L  L+ ++++   + ++              
Sbjct: 497  NAAMEARTIIQWDKDDIETLGLLKVDVLALGMLSAIRRAFSLINKQYPVETSIPFITKLG 556

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVY 661
            DD + + ++    T+G+FQ+ES      L  ++P    D++  +++ RPGPI  D +  Y
Sbjct: 557  DDKQVFDMICRADTVGVFQIESRAQMSMLPRLKPRRYYDLVVQIAIVRPGPIQGDMVHPY 616

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
              R++G E I      ++ +L  T GV I+QEQV+Q+A + +G+S  EAD LRRAM   K
Sbjct: 617  LIRRHGNETISYPSKEVEKVLSRTMGVPIFQEQVIQLAMVAAGFSGGEADQLRRAMASWK 676

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                + + +++ I G +  G   T A N+FE +  FA YGF +SH+A++AV++Y + W+K
Sbjct: 677  KDGRIFEFRDKLIKGMTNKGYDSTFAHNLFEQIKGFAGYGFPESHSASFAVLAYVSCWLK 736

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI----Y 836
             ++PVEF  A +           +  QDA++ NI +  P VN    +  +          
Sbjct: 737  FYFPVEFYVALLNSWPMGFYTPSQLVQDAKRHNIYVEAPCVNKSDTEHTLVTKGEDKYIQ 796

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  IKG+    +  I++      +  +E    ++    +    LE+L  A A      
Sbjct: 797  LGLKLIKGLSEVASHKIVKNRPAAGYTHIE----QIQHLSIKSNELEALASADAFRTISG 852

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R +    + +            T     +F   +       +    +  + +     + 
Sbjct: 853  NRYETRWRIMD------------TQTRLPLFDTVEVNTKQGYS-PLKNKPSDAQNLLEDY 899

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
               G   + HP+ + K   +   I      +     + +++   V  +Q   T  G  + 
Sbjct: 900  ASTGLSVNNHPISLLKRQHKLNDISWSNTLINKKNKSVVKVLGAVTGRQAPGTAAG--VT 957

Query: 1017 WVTFSEPAKEYEANFF 1032
            ++T  +         +
Sbjct: 958  FLTLEDDIGNINVVVW 973


>gi|88800509|ref|ZP_01116072.1| DNA polymerase III, alpha subunit [Reinekea sp. MED297]
 gi|88776740|gb|EAR07952.1| DNA polymerase III, alpha subunit [Reinekea sp. MED297]
          Length = 1050

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/1064 (24%), Positives = 457/1064 (42%), Gaps = 103/1064 (9%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +    E    F  L   S++S L  A     ++ + +     A+A+TD  ++   +   +
Sbjct: 1    MANSSETDLGFAELHCLSNFSFLRAASHPQELIRRASELGYRALAVTDECSVAGVVRAWR 60

Query: 61   KAC--AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            +       I+ I+G +  +D                   ++VLL    EGY++L +L++R
Sbjct: 61   ERKDNELDIKLIVGSEFLVD-----------------GHTLVLLARNNEGYRQLCQLITR 103

Query: 119  MYLL-DQGKQSVRICLSWLQEIGTEGLIML-TGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            M    ++G+   R  L   Q+  T   + L      G +               L     
Sbjct: 104  MRRRAEKGQYDAR--LHDFQQTSTSDCLCLYLPPRHGDV------------RATLQHLCH 149

Query: 177  LFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             F  RL++        D  R   +V QLA  ++LP+VA+++      E  + HD L A+ 
Sbjct: 150  QFEKRLWLLADNSLDNDAPRLRERVEQLAEDYQLPIVASSHVQMHIPERKKLHDCLTAIR 209

Query: 236  HSTVVS-QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
             +  +   + + +   +++L++  ++  IF    + L N+V IA +C F L       P+
Sbjct: 210  ANQPIEAIRHQLKPNAENHLRSLKKLAHIFP--ADWLHNSVHIADQCQFELDSIRYRYPK 267

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
             +       Q      LR     G++ R      A      +  +R+D EL +I    F 
Sbjct: 268  DVLP----GQYSAGEYLRLLVKQGVQRRFGSQVEA------ELWKRIDTELALIKLKGFE 317

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFL V D +++A+   I +  GRGSGA SV  Y L IT+++P   SLLFERF++  R  
Sbjct: 318  HYFLTVYDIVRFARSRGI-LCQGRGSGANSVVCYVLGITEVNPREASLLFERFISEGRKD 376

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD- 473
             PD D+DF  +RR+E+I+Y+  KYG +R A   T  + + K+ALRDV +AL +    +D 
Sbjct: 377  PPDIDVDFEHERREEIIQYLYEKYGRKRAALAATVITYRRKSALRDVAKALGIQVDLLDQ 436

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            ++        +     + I D        L+   +D    + +++    RH S H  G V
Sbjct: 437  KIANYGWRYRSKDWIDEIIND-----GLGLSAYQIDIFKTLLKEISSFPRHLSQHVGGFV 491

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
            I +  ++ LVP+     +D  V Q++   +E   L+K D L L  L+ ++KSLD +    
Sbjct: 492  ITEGVVADLVPIENASMADRTVIQWDKDDLESLSLMKVDILALGMLSAVRKSLDLIRDFH 551

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               + +  I  DD + + ++    T+G+FQ+ES      L  ++P C  D++  V++ RP
Sbjct: 552  QQPIQIQDIDRDDADVFRMIQKADTVGVFQIESRAQMSMLPRLKPHCYYDLVVQVAIVRP 611

Query: 653  GPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GPI  D +  Y  R+ GKE +V   P +  +L+ T GV I+QEQV+++A + + ++ +EA
Sbjct: 612  GPIHGDMVHPYLLRREGKEPVVYPKPELKEVLERTYGVPIFQEQVIKLAMVAADFNGTEA 671

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            D LRR+M   K    M     +       NG  +     I   +  F +YGF +SHAA +
Sbjct: 672  DELRRSMASWKKTGHMSHLHAKLSEKMLANGYPQDYIDRINRQIEGFGEYGFPESHAAGF 731

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+I+Y ++W+K HYP  F  A +           +  QD ++  +++ P  +N    D  
Sbjct: 732  ALIAYVSSWLKCHYPAAFCCALLNSLPMGFYSASQLVQDVQRHGVKVRPVDINHSDWDST 791

Query: 830  V-------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
            +       GD  +   L  +KG+    A  ++       F SL           L++  +
Sbjct: 792  LEPDNTSTGDAALRLGLRRVKGLSEQAAISLLLYRPADGFQSLRQL---EKIPGLHKGDI 848

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E+L  A AL      R Q               +    +   ++ +      +D   L  
Sbjct: 849  EALASADALAGIAGHRFQARW------------QAAAMHPQNDLLSD--AFDNDDTALPA 894

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPI-------LRKMGIKGYEESVATIRGN-- 993
                ++      +Q  +G     H + + +              +    E+    RGN  
Sbjct: 895  PDDYDN---LVEDQDSVGLSLRTHLVRLLRERDMLPDTPTADQLLALANEAQRQRRGNPD 951

Query: 994  -----NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                  I ++ ++ ++Q  KT  G  + +VT  +         +
Sbjct: 952  DKIKVPIVVSGLITNRQMPKTATG--VTFVTLEDHTGNINLIVW 993


>gi|320546638|ref|ZP_08040950.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus equinus
            ATCC 9812]
 gi|320448693|gb|EFW89424.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus equinus
            ATCC 9812]
          Length = 1035

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/1026 (28%), Positives = 489/1026 (47%), Gaps = 103/1026 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   + +        I I D +NL++A  F + A   GI+P+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLEGYVKEAKVLGYQTIGIMDKDNLYAAFHFIEIAKKQGIRPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L +D+Q+NL +T              L+    +GY+ L+++ SR            
Sbjct: 62   LGLELTLDIQENLSVT------------FYLIARDTQGYKNLMKVSSRQMTNG------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L  L +      +++            F                      Y+ +  H 
Sbjct: 103  IQLEDLNDYLQGIAVIIPYFEDLESISVPF--------------------DYYIGVDIHS 142

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                            +  P++  +   + +  + E   +L A+  +  VS KD P V  
Sbjct: 143  EE------------REYNKPILPLHTVRYFNTNEVETLHMLHAIRDN--VSLKDAPLVPQ 188

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            + +L     +   F    P+ALEN  ++     +        LPRF      + QK  + 
Sbjct: 189  NQHLVACDILTQAFEQKFPKALENLEQLVSTIQYDFNSEL-KLPRF------NRQKPAQE 241

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL     +GL+         KG    +Y++RL  EL+VI +M F  YFLIV D +++ + 
Sbjct: 242  ELVELTQSGLKE--------KGLWLLEYQERLSKELSVIHKMGFDDYFLIVWDLLRFGRS 293

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ +YAL IT IDP++ +LLFERFLN +R SMPD DID     R E
Sbjct: 294  RGYYMGMGRGSAAGSLVSYALDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYRSE 353

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             + YV+N+YG    AQI+TF +  AK A+RDV +    P  ++  + K I          
Sbjct: 354  FLHYVRNRYGSLHSAQIVTFSTFGAKQAIRDVFKRFGAPEHELTNITKKISFRDNLTT-- 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                 +  FR+   +     +   I++++EG  R  S HAAG+V+ D  L++ +P+    
Sbjct: 412  -VYEKNLSFRQIINSKIEYQKAFAIAKRIEGNPRQTSIHAAGVVMSDDNLTEHIPL--KA 468

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  + +A+   V +D+  I  +D +T
Sbjct: 469  GEDMMITQYDASAVEANGLLKMDFLGLRNLTFVQRMQEKVAKDYDVNIDIKSINLEDKKT 528

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   EDI+A  SL RPG  D    +  R+  K
Sbjct: 529  LALFAAGRTKGIFQFEQAGAINLLKRIKPRKFEDIVATTSLNRPGASDYTENFIKRRFRK 588

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E +  I PL+  +L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  E+M K 
Sbjct: 589  ETVDLIDPLVAHILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKKVEDMQKM 648

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  F+ GA   G    +A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 649  ESEFLKGAQSLGRPLDVAKDLFSRMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 708

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA +    +    +NT   + K+ D RIY  L  +KGV   
Sbjct: 709  DVMLNYSSAD------YITDALESEFSVNKIDINTVPYNDKISDGRIYLGLKNLKGVPRD 762

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
                I+E   ++PF S+EDF +++      +  +  L+  GA D F  +R +++++L+ +
Sbjct: 763  MCYWIIE---NRPFSSIEDFLTKLPENYQKKEFVTPLIEIGAFDKFEKNRRKIIENLEPL 819

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++FA    ++       +    +S+ ++  EQ +LG   S HPL
Sbjct: 820  FMFV--------NELGSLFAETSYSWI------EVEDFSSAEKYRQEQGLLGVGISPHPL 865

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + K     +             +   +   +  +T+ KG ++ ++  ++  K++
Sbjct: 866  L----EIAKKSSVSFTALADLHENTEATILVELNQIRVIRTKTKGEQMAFLNVTDMKKKF 921

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 922  DVTLFP 927


>gi|94994536|ref|YP_602634.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS10750]
 gi|94548044|gb|ABF38090.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10750]
          Length = 1036

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/1026 (28%), Positives = 508/1026 (49%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EG+ ++                            K + D L V    + 
Sbjct: 102  LHMDYLCQ-HLEGIAVIIP-------------------------SKGWSDTLVVPFDYYI 135

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D+Y +   +  +    +PL       + +++D E   +L A+  +  +++   P V  
Sbjct: 136  GVDQYTDLSHMD-SKRQLIPL---RTVRYFAQDDMETLHMLHAIRDNLSLAET--PVVES 189

Query: 251  DHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D  L +  ++ + +    P+AL+N  ++     +    +   LP F      +  K  + 
Sbjct: 190  DQELADCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNL-KLPHF------NRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL++   AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQDLTEAGLKE--------KGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 412  TVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHMPL--KS 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+      D++ I  +D +T
Sbjct: 470  GDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  LALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K 
Sbjct: 590  EKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  EEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M     +      +  DA + + Q+   ++N+     K+  ++IY  L  IKG+   
Sbjct: 710  DIMMNYSSSD------YITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E    +PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +LD +
Sbjct: 764  FAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNLDGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++F+    ++ D          +++ ++  EQ ++G   S HPL
Sbjct: 821  LVFV--------NELGSLFSDSSFSWVDA------KDYSATEKYSLEQEIVGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++ +   +   + S +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  ----IDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|296876766|ref|ZP_06900814.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            parasanguinis ATCC 15912]
 gi|296432268|gb|EFH18067.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            parasanguinis ATCC 15912]
          Length = 1039

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1030 (29%), Positives = 504/1030 (48%), Gaps = 115/1030 (11%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L   + Y+ +E  +++ + +    +    A+ I D +NL+ A EF +   A  + P++
Sbjct: 9    VQLDTKTVYTFMESLVTIKDYVQVAKSMGYDALGIMDVDNLYGAYEFIEACQAHNLSPLV 68

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++             G           ++  +  GYQ L+++ +   +     +    
Sbjct: 69   GLEV-------------GLEVDNETIPFRMIALSTRGYQNLMKMSTLKMMGKNNWE---- 111

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             +  L E    G+ ++               +S+     L  F  +F D           
Sbjct: 112  DVKHLTE----GVAVIVPAPF----------ASEDLPLGLDYFIGVFADTPVQEFSH--- 154

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P++      F  EED EA  +L A+  +  +++       P 
Sbjct: 155  ------------------PVLPLYTVRFFEEEDVEAMQMLAAIKDNQSLTETGPN--DPR 194

Query: 252  HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              LK   ++ + F++  P+A+ N  ++ +   + +      LPRF      + QK    E
Sbjct: 195  TVLKTPQDLKNDFAERFPQAITNLEKLVQGIQYDIDTQL-KLPRF------NSQKPAVEE 247

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A AGL        + K      Y++RL+ EL++I +M F  YFLIV D +++ +  
Sbjct: 248  LRELAQAGL--------LRKNLTNPVYQERLEHELDIIHQMGFDDYFLIVWDLLRFGRSQ 299

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ AYAL IT IDP+  +LLFERFLN +R +MPD DID     R E 
Sbjct: 300  GYYMGMGRGSAVGSLVAYALEITGIDPVEKNLLFERFLNVERYTMPDIDIDIPDIYRPEF 359

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV+++YG    AQI+TF +  AK A+RDV +   +P  ++  + K I           
Sbjct: 360  IRYVRDRYGSYHAAQIVTFSTFGAKQAIRDVFKRFGVPEYELTSITKRIGFRDTLTT--- 416

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   +  FR+   +     R  EI++++EG  R  S HAAG+V+ D+ L+  VP+     
Sbjct: 417  AYEQNLAFRQVIHSRAEFKRGFEIAKRIEGQPRQTSIHAAGVVMSDQDLTDHVPL--KYG 474

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
             D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + +  +   ++ +  I  +D  T 
Sbjct: 475  EDMFVTQYDAHAVEANGLLKMDFLGLRNLTFVQKMKEAVYEKYQEEIVIEAIDLEDPATL 534

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E +G  + L  ++P+  E+++A  SL RPG  D I  +  RK+G+E
Sbjct: 535  ALFAAGDTKGIFQFEQAGAIRLLRRVRPNHFEEVVATTSLNRPGASDYIDNFVKRKHGQE 594

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  + P I+ +L+ T G+++YQEQVMQ+AQ  +G++L +AD+LRRAMGKK   EM K +
Sbjct: 595  KVDILDPAIEEILRPTYGIMLYQEQVMQVAQRFAGFTLGKADILRRAMGKKNATEMHKME 654

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F++GA K G ++  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F  
Sbjct: 655  DDFVTGALKLGHTEEKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQMAYFKVHYPDVFFD 714

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +     +      +  DA QF+ ++ P S+NT     K  D +IY  +  IKG+    
Sbjct: 715  VMLNYSSSD------YLTDALQFDFKVAPLSINTIPYRDKFQDRKIYLGMKNIKGLPRDL 768

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I++   ++PF+S+EDF  R+ ++     +L  LV  G  D F  +R ++L +L N+ 
Sbjct: 769  AYWIID---NRPFESVEDFILRLPNQYHKLPLLTPLVELGLFDNFEKNRRKVLHNLPNLF 825

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL- 968
             +A        ++  ++FA    ++++          + + ++E E+ ++G   S HPL 
Sbjct: 826  VFA--------DELGSLFADSNYSWTEA------EDYSQAEKYEKEEAIIGIGLSTHPLV 871

Query: 969  -----DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
                   Y+       I+   + +   +G   R+   V S +  +T+ G  + ++  S+ 
Sbjct: 872  AIGQTSPYE-------IQPISQLI---QGEQARILIEVQSIRTIRTKSGDLMAFLQVSDT 921

Query: 1024 AKEYEANFFP 1033
             K+ +   FP
Sbjct: 922  KKKLDVTLFP 931


>gi|15675237|ref|NP_269411.1| DNA polymerase III DnaE [Streptococcus pyogenes M1 GAS]
 gi|71910803|ref|YP_282353.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS5005]
 gi|81175277|sp|P0C0F3|DPO3A_STRP1 RecName: Full=DNA polymerase III subunit alpha
 gi|13622407|gb|AAK34132.1| putative DNA polymerase III (alpha subunit) [Streptococcus pyogenes
            M1 GAS]
 gi|71853585|gb|AAZ51608.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS5005]
          Length = 1036

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/1026 (28%), Positives = 506/1026 (49%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEIEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +  +   EG+ ++                            K + D L V    + 
Sbjct: 102  LHMDYFCQ-HLEGIAVIIP-------------------------SKGWSDTLVVPFDYYI 135

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D+Y +   +  +    +PL       + +++D E   +L A+  +  +++   P V  
Sbjct: 136  GVDQYTDLSHMD-SKRQLIPL---RTVRYFAQDDMETLHMLHAIRDNLSLAET--PVVES 189

Query: 251  DHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D  L +  ++ + +    P+AL+N  ++     +    +   LP F      +  K  + 
Sbjct: 190  DQELADCQQLTAFYQTHCPQALQNLEDLVSGIYYDFDTNL-KLPHF------NRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL++   AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQDLTEAGLKE--------KGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 412  TVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDALTNHIPL--KS 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+      D++ I  +D +T
Sbjct: 470  GDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDITAIDLEDPQT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  LALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K 
Sbjct: 590  EKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  EEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M     +      +  DA + + Q+   ++N+     K+  ++IY  L  IKG+   
Sbjct: 710  DIMMNYSSSD------YITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E    +PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +LD +
Sbjct: 764  FAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNLDGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++F+    ++ D          + + ++  EQ ++G   S HPL
Sbjct: 821  LVFV--------NELGSLFSDSSFSWVDT------KDYSVTEKYSLEQEIVGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++ +   +   + S +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  ----IDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|302546554|ref|ZP_07298896.1| DNA polymerase III, alpha subunit [Streptomyces hygroscopicus ATCC
            53653]
 gi|302464172|gb|EFL27265.1| DNA polymerase III, alpha subunit [Streptomyces himastatinicus ATCC
            53653]
          Length = 1166

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1078 (26%), Positives = 475/1078 (44%), Gaps = 79/1078 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            + P F HL   S +S+  GA     +  + A     AIA+TD ++L  A+ F++ + AAG
Sbjct: 2    RMPGFTHLHTASGFSMRYGAAHPERLAARAAERGMDAIALTDRDSLAGAVRFARASEAAG 61

Query: 67   IQPIIGCQ-LDIDMQDNLKMTNQGKTP-------FPTVPSIVLLVST-AEGYQRLIELVS 117
            ++P+ G          +   T + +TP         + P  V L    A G+  L  LVS
Sbjct: 62   VRPLFGVDLAVQAELPDPGRTARRRTPVRGGAFIDESAPRAVFLARDGAAGWAALCGLVS 121

Query: 118  RMYLLDQGKQSVR------ICLSWLQEIGTEG----LIMLTGGSSGPIDRAFFFNSSQVA 167
              +       S R        L W   +   G    +I L G  S  + RA        A
Sbjct: 122  AAHAGLGHPGSARTNGDGPPLLHWRDLLNAPGALAPVIALLGPDS-DVGRALAAGRPDRA 180

Query: 168  EKRLLTFKKLFGDRLYVNLQRHR----GYDRYRES-QVVQLAYTHELPLVATNNSLFLSE 222
             + L  +++LFGD L +    H     G    R + + V  A    +  V +N   +   
Sbjct: 181  ARLLAPWRELFGDALRLEAVWHGRPGTGPGSLRLAARTVGFAADQGVRAVLSNAVRYADP 240

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMV-----------SIFSDLPEA 270
             +    DVL +      +  ++   + + + +LK   +M                     
Sbjct: 241  GEGPVADVLDSARRLIPIDPRNPASLDSGERWLKGPRDMARAAERIAEAAGQRRDGAHRL 300

Query: 271  LENTVEIARRCSFILQVHAPILP-RFIEKECDDI-QKEEENELRNKAVAGLEVRLAQGAI 328
            LE T   A  C    + H  +    F E       ++  E  LR++  A + +R   G  
Sbjct: 301  LEETARTAAACLVDPEDHIGLGTVHFPEPRLVGAGRRSAERVLRSRCAAAMVLRGYDGDR 360

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
            A+         RL+ EL  I R+ ++ YFL VA  +   +   + V   RGSGAGS   +
Sbjct: 361  AR-------WGRLEDELRTIERLGYASYFLTVARVVDDTRALGVRVA-ARGSGAGSFVNH 412

Query: 389  ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
             L +   DP+   LL ERFL+  R ++PD DID    RR +V R + +++G ERVA +  
Sbjct: 413  LLGVAHADPVACGLLMERFLSVRRAALPDIDIDVESARRLDVYRAIFDRFGAERVATVSM 472

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN--DPAHPVSLQAIADDSRFREARLADP 506
              + + + A+RDVG AL M  ++VDRL K  P+        +L  + +    REA     
Sbjct: 473  PETYRVRHAVRDVGAALGMDPAEVDRLAKSFPHIRARDARAALAELPELKELREATAEQE 532

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
               +L E+ + L+GL R  + H  G+++ D  L    P+        P++QF+   +E+ 
Sbjct: 533  RFGKLWELVEALDGLPRGIAMHPCGVLLSDAGLLARTPIVPTSGEGFPMSQFDKDDVEEL 592

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLA----QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            GL+K D LG++  + +  ++  +     +     D + +   D  TY L+ +  TLG FQ
Sbjct: 593  GLLKLDVLGVRMQSAMAHAVAEIRRATGKTVDLDDPAQVRPGDPATYDLIRSTETLGCFQ 652

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP 680
            +ES G R  L  +QPD   D++  +SL+RPGP+  D +  + + ++G+      HP ++ 
Sbjct: 653  IESPGQRDLLGRLQPDSFHDLVVDISLFRPGPVAADMVRPFIDARHGRRPARYPHPDLED 712

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
             L+ET GV+++ EQ+++I  +++G     AD  RRA+     E   + +  F + A + G
Sbjct: 713  ALRETYGVVVFHEQIIKILSIMTGCERDLADEARRALS--DPERQGRVRAWFHAEAGRRG 770

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             S  +    +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     
Sbjct: 771  YSAEVLGRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYP 830

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDNRIYYSLAAIKGVGTTTARHIM 854
            K +    DAR+  + I+P  VN    D+++      G+  +  +L+ + G+     R I 
Sbjct: 831  K-RLLLADARRRGVPILPLDVNRSGSDYRIELMSENGEVGVRLALSDVHGISEAETRRIA 889

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
               A +P+ SL+D   R       R V E L   GALD FG  R  LL  +  + +    
Sbjct: 890  ---AGQPYSSLQDLWLRAH---PGRPVAERLAQVGALDAFGAGRRDLLLHIAELHR---- 939

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
             ++  T+    +   E G  +           +   R   E  +LG   S H +  ++  
Sbjct: 940  -QRAGTHDEGQLLLAETGPPAPA----GLPDLDEGERLGAELGILGMDVSRHLMADHRTF 994

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            L ++G    +   +   G  + +A    + Q    R G R+ + T  +     +  FF
Sbjct: 995  LDELGAMPAKRLRSARHGETVLVAGAKAATQTPPIRSGRRVIFTTLDDGTGLVDCAFF 1052


>gi|226193729|ref|ZP_03789332.1| error-prone DNA polymerase [Burkholderia pseudomallei Pakistan 9]
 gi|225934307|gb|EEH30291.1| error-prone DNA polymerase [Burkholderia pseudomallei Pakistan 9]
          Length = 928

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/923 (28%), Positives = 414/923 (44%), Gaps = 52/923 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            R+    L         +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 124 YRLTPRMLAAPPRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLVQ 183

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D     QV        + +VA  +            D + A+     +++     
Sbjct: 184 LQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHAL 243

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 244 APNGEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----HT 297

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D +++
Sbjct: 298 PTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVKY 351

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A+  +I +  GRGS A SV  Y + +T+++P + +LLFERFL+ +R   PD D+DF   R
Sbjct: 352 ARSKDI-LCQGRGSAANSVVCYCIGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQR 410

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 411 REEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 470

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             L   A      E     P +    EI+ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 471 DLLARFASVGLDPEV----PLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVE 526

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                   V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 527 NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 586

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
            IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 587 HIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 646

Query: 659 -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 647 VHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 706

Query: 713 LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           LRRAM   K K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A 
Sbjct: 707 LRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAK 766

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
           ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 767 LAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASLE 826

Query: 831 ---------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                    G   +   L+ ++G+G   AR I  A A  PF S+++   R       RR 
Sbjct: 827 AQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRACL---ERRD 883

Query: 882 LESLVFAGALDCFGYSRMQLLQS 904
           LE+L  A A      +R   L++
Sbjct: 884 LEALAAANAFATLAGNRRDALRA 906


>gi|139473654|ref|YP_001128370.1| DNA polymerase III DnaE [Streptococcus pyogenes str. Manfredo]
 gi|134271901|emb|CAM30139.1| DNA polymerase III alpha subunit [Streptococcus pyogenes str.
            Manfredo]
          Length = 1036

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/1026 (28%), Positives = 506/1026 (49%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EG+ ++                            K + D L V    + 
Sbjct: 102  LHMDYLCQ-HLEGIAVIIP-------------------------SKGWSDTLVVPFDYYI 135

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D+Y +   +  +    +PL       + +++D E   +L A+  +  +++   P V  
Sbjct: 136  GVDQYTDLSHMD-SKRQLIPL---RTVRYFAQDDMETLHMLHAIRDNLSLAET--PVVES 189

Query: 251  DHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D  L +  ++ + +    P+AL+N  ++     +    +   LP F      +  K  + 
Sbjct: 190  DQELADCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNL-KLPHF------NRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL+    AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQELTEAGLKE--------KGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 412  TVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPL--KS 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+      D++ I  +D +T
Sbjct: 470  GDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  LALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K 
Sbjct: 590  EKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  EEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M     +      +  DA + + Q+   ++N+     K+  ++IY  L  IKG+   
Sbjct: 710  DIMMNYSSSD------YITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E    +PF+S+EDF +R   K   +  LE L+  G  D F  +R ++L +LD +
Sbjct: 764  FAYWIIE---QRPFNSVEDFLTRAPEKYQKKFFLEPLIKIGLFDYFEPNRKKILDNLDGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++F+    ++ D          +++ ++  EQ ++G   S HPL
Sbjct: 821  LVFV--------NELGSLFSDSSFSWVDT------KDYSATEKYSLEQEIVGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++ +   +   + S +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  ----IDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|19746207|ref|NP_607343.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS8232]
 gi|25452932|sp|Q8P0S5|DPO3A_STRP8 RecName: Full=DNA polymerase III subunit alpha
 gi|19748390|gb|AAL97842.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS8232]
          Length = 1036

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/1026 (28%), Positives = 507/1026 (49%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EG+ ++                            K + D L V    + 
Sbjct: 102  LHMDYLCQ-HLEGIAVIIP-------------------------SKGWSDTLVVPFDYYI 135

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D+Y +   +  +    +PL       + +++D E   +L A+  +  +++   P V  
Sbjct: 136  GVDQYTDLSHMD-SKRQLIPL---RTVRYFAQDDMETLHMLHAIRDNLSLAET--PVVES 189

Query: 251  DHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D  L +  ++ + +    P+AL+N  ++     +    +   LP F      +  K  + 
Sbjct: 190  DQELADCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNL-KLPHF------NRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL++   AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQDLTEAGLKE--------KGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALDITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 412  TVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPL--KS 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+      D++ I  +D +T
Sbjct: 470  GDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  LALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K 
Sbjct: 590  EKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  EEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M     +      +  DA + + Q+   ++N+     K+  ++IY  L  IKG+   
Sbjct: 710  DIMMNYSSSD------YITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E    +PF+S+EDF +R   K   +  LE L+  G  D F  +R ++L +LD +
Sbjct: 764  FAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDYFEPNRKKILDNLDGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++F+    ++ D          +++ ++  EQ ++G   S HPL
Sbjct: 821  LVFV--------NELGSLFSDSSFSWVDT------KDYSATEKYSLEQEIVGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++ +   +   + S +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  ----IDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|146134269|dbj|BAF57223.1| DNA polymerase III subunit alpha [Streptococcus bovis]
          Length = 1035

 Score =  712 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/1026 (28%), Positives = 490/1026 (47%), Gaps = 103/1026 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   + +        I I D +NL++A  F  KA + G++P+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLEGYVKEAKVLGYQTIGIMDKDNLYAAFHFITKAKSEGLRPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L +++Q+NL +            S+ L+     GY+ L+++ SR            
Sbjct: 62   LGLELTLNLQENLSL------------SVYLIARDTTGYKNLMKVSSRQMTSG------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L  L+E  + GL ++     G              E   L F        Y+ +  H 
Sbjct: 103  IQLEDLKEYLS-GLAVIIPYYDG-------------LESLSLPFD------YYIGVDVHS 142

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                            ++ PL+  +   + +  + E   +L A+  +  +S KD P    
Sbjct: 143  EE------------RDYDKPLIPLHTVRYFNTNEVETLHMLHAIRDN--ISLKDAPAAPQ 188

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               L     +   F    P+ALEN  ++     +        LPRF      + QK  + 
Sbjct: 189  GQQLMACDILTQAFEQKFPQALENLEKLVAEIHYDFNSEL-KLPRF------NRQKPAQE 241

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL     AGL+        AK     +Y++RL  EL+VI +M F  YFLIV D +++ + 
Sbjct: 242  ELIELTEAGLK--------AKNLWLPEYQERLAKELSVIHKMGFDDYFLIVWDLLRFGRS 293

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ +YAL IT IDP++ +LLFERFLN +R SMPD DID     R E
Sbjct: 294  RGYYMGMGRGSAAGSLVSYALDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYRSE 353

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             + YV+N+YG    AQI+TF +  AK A+RDV +    P  ++  + K I          
Sbjct: 354  FLHYVRNRYGSLHSAQIVTFSTFGAKQAIRDVFKRFGAPEHELTNITKKISFRDNLST-- 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                 +  FR+   +     +   I++++EG  R  S HAAG+V+ D  L++ +P+    
Sbjct: 412  -VYEKNLSFRQIINSKIEYQKAFAIAKRIEGNPRQTSIHAAGVVMSDDNLTEHIPL--KA 468

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  + +A+   + +D+  I  +D +T
Sbjct: 469  GEDMMITQYDAAAVEANGLLKMDFLGLRNLTFVQRMQEKVAKEYGITIDIKSIDLEDQQT 528

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   EDI+A  SL RPG  D    +  R+ G+
Sbjct: 529  LALFAAGKTKGIFQFEQAGAINLLKRIKPQKFEDIVATTSLNRPGASDYTENFIRRRFGQ 588

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E I  I PL+  +L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  E+M K 
Sbjct: 589  EAIDLIDPLVAKILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKKAEDMQKM 648

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  F+ GA   G     A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 649  ESEFLKGAQALGRPLETAKDLFSRMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 708

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA +   +I    +N    + K+ D RIY  L  ++ +   
Sbjct: 709  DVMLNYSSAD------YITDAMESEFRIKKIDINIVPYNDKIADGRIYLGLKNLRALPRD 762

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
                I++     PF S+EDF +++      + ++  LV  GA D F  +R +++++L+ +
Sbjct: 763  LCYWIIDHR---PFSSIEDFLTKLPENYQKKELITPLVEVGAFDNFEKNRRKIIENLEPL 819

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++FA     +       +     ++ ++  EQ +LG   S HPL
Sbjct: 820  FMFV--------NELGSLFAENSYNWI------EVEDFPNTEKYRQEQGLLGVGISPHPL 865

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + K     +             +   +   +  +T+ KG ++ ++  ++  K++
Sbjct: 866  L----EIAKNSSIAFTALSDLHENTEATILVELSQIRVIRTKTKGEQMAFLNVTDTQKKF 921

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 922  DVTLFP 927


>gi|111657741|ref|ZP_01408464.1| hypothetical protein SpneT_02001071 [Streptococcus pneumoniae TIGR4]
          Length = 1020

 Score =  712 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/1012 (29%), Positives = 487/1012 (48%), Gaps = 103/1012 (10%)

Query: 23   LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
            +E  +S+   +          +A+ D +NL+ A +F +     GI P++G ++ + + D 
Sbjct: 1    MESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLGLEMTVFVDD- 59

Query: 83   LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
                           ++  L  ++ GYQ+L++L +      QG+++  +   +L++I   
Sbjct: 60   ------------QGVNLRFLALSSVGYQQLMKLSTA---KMQGEKTWSVLSQYLEDIA-- 102

Query: 143  GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQ 202
             +I+                               F     + L    G D Y       
Sbjct: 103  -VIV-----------------------------PYFDRVESLEL----GCDYYIGVYPET 128

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            LA     P++           D E   VL A+  +  + +   P  +      + S +  
Sbjct: 129  LASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSRQDVFISASSLEK 186

Query: 263  IF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
            +F    P+AL+N  ++    S+ L      LPRF                   AV  L  
Sbjct: 187  LFQERFPQALDNLEKLISGISYDLDTSL-KLPRFNP--------------ARPAVEELRE 231

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
            R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N   +G GRGS 
Sbjct: 232  RAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGQSNGYYMGMGRGSA 291

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
             GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + IRYV NKYG +
Sbjct: 292  VGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFIRYVGNKYGSK 351

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
              AQI+TF +  AK ALRDV +   +P  ++  + K I           A   + +FR+ 
Sbjct: 352  HAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK---SAYEGNLQFRQQ 408

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
              +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      ++P+TQ++  
Sbjct: 409  INSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KYGDEIPLTQYDAH 466

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGI 620
             +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D ET  L  +  T GI
Sbjct: 467  GVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETLALFASGNTKGI 526

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E++  + P+++ 
Sbjct: 527  FQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEEVTVLDPVLED 586

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +L  T G+++YQEQVMQ+AQ L+G+SL +AD+LRRAMGKK    M + +  FI G+ + G
Sbjct: 587  ILAPTYGIMLYQEQVMQVAQRLAGFSLGKADILRRAMGKKDASAMHEMRASFIQGSLEAG 646

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F    +     +  
Sbjct: 647  HTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQVMLNSSNSD-- 704

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                +  DA +   ++   S+NT     K+ +  IY  L +IKGV    A  I+E   ++
Sbjct: 705  ----YLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIKGVSNDLALWIIE---NR 757

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ ++ +       
Sbjct: 758  PYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFEFVK------- 810

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
             +  ++F     ++ +              +F  EQ +LG   S HPL      +    I
Sbjct: 811  -ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQ----AIASKAI 859

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                        +   +   V   +  +T+KG  + ++   +  K+ +   F
Sbjct: 860  YPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVTLF 911


>gi|85704565|ref|ZP_01035667.1| DNA polymerase III, alpha subunit [Roseovarius sp. 217]
 gi|85670973|gb|EAQ25832.1| DNA polymerase III, alpha subunit [Roseovarius sp. 217]
          Length = 956

 Score =  712 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/1000 (25%), Positives = 410/1000 (41%), Gaps = 84/1000 (8%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            F  L   S+++ L GA      + + A      +AI D N++   +     A     + 
Sbjct: 2   PFAELSATSNFTFLTGASHPEEYIRRAATLGLSGVAIADVNSVAGIVRAHAAAREITREV 61

Query: 70  I-IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS--------------TAEGYQRLIE 114
                                   +   P ++                     G+  L  
Sbjct: 62  AERQALEARQGPIGPPAPRPAPPDWANCPRLIPAARLVLREGIEITALPENRVGWASLCR 121

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
           L+S              C   L ++  G EGL +L                   A   + 
Sbjct: 122 LISLGRQC----APKGACDLGLADVLAGAEGLHLLL--------------HPDPARAWVS 163

Query: 173 TFKKL---FGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             + L   F DRL++ L  H  G D  R  ++ +LA    LP +A    L          
Sbjct: 164 QVRPLVARFADRLHLVLSPHYDGRDPARFDRLTELAARLGLPTIAAAAPLMHRGHRRRLA 223

Query: 229 DVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
           DVL A+     V    R  +   +  L++ +EM  ++     A+E   ++A R  F L  
Sbjct: 224 DVLSAIRLGVTVDALGRHALCNAEQRLRSEAEMRHLYRGHEAAVERASDLAARLGFSLDA 283

Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                P           +     LR  A+ GL+ R   GA  +       R  L+ EL +
Sbjct: 284 LRYDYPSEATN-----GETPSQRLRRLALEGLDWRYPDGASDR------VRGMLEHELTL 332

Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
           IA++++  YFL V D + +A+   I +  GRGS A SV  Y L +T + P   +++FERF
Sbjct: 333 IAKLRYEPYFLTVNDVVAFARSRGI-LCQGRGSAANSVVCYCLGVTSVSPEIGTMVFERF 391

Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
           ++  R   PD D+DF  +RR+EVI+++  +YG  R     T    + K A+R+VGRA+ +
Sbjct: 392 VSEARDEPPDIDVDFEHERREEVIQWIYERYGRHRAGLCATVIHYRTKRAIREVGRAMGL 451

Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL---LEISQKLEGLYRH 524
               +  +   I          +   D  R RE  L DP   RL   L + +++ G  RH
Sbjct: 452 TEDILAAMASQIWGHGG-----EGALDPLRLREIGL-DPRNRRLAMTLGLIREIIGFPRH 505

Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            S H  G VI +  L +LVP+     ++  V  ++   I+  G++K D L L  LT ++K
Sbjct: 506 LSQHVGGFVITEGRLDELVPIENASMAERTVICWDKDDIDTLGILKVDVLALGMLTCIRK 565

Query: 585 SLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
           + D L Q RG +  L+ +P +D + Y +L+   +LG+FQ+ES      L  M+P    D+
Sbjct: 566 AFDLLVQYRGTRYSLATLPPEDAQVYEMLSRADSLGVFQVESRAQMNFLPRMRPRTFYDL 625

Query: 644 IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
           +  V++ RPGPI  D +  +  R+NG+E +      +  +L +T GV ++QEQ MQIA +
Sbjct: 626 VIQVAIIRPGPIQGDMVHPFIRRRNGEEAVSFPSDDLGRVLGKTLGVPLFQEQAMQIAII 685

Query: 702 LSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +G++  EAD LRR++   K    + + + RF+ G   NG     A   F  +  F  YG
Sbjct: 686 GAGFTPEEADRLRRSLATFKKHGNVSEFRNRFLCGMRANGYDAEFAERCFSQIEGFGSYG 745

Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
           F +SHAA++A + Y +AW+K H+P  F  A +  +        +  +DAR   + + P  
Sbjct: 746 FPESHAASFAHLVYASAWIKCHHPAIFACALLNSQPMGFYAPAQIVRDARDHGVTVRPVC 805

Query: 821 VNTPCVDFKVGDNR-----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
           +N    D  +  +R     +      IKG+    A  I  A  +  +   ++   R    
Sbjct: 806 INASYWDNTIEPDRQGRLALRLGFRQIKGIAQDEADWIAAARGNG-YTGPDEVWRRA--- 861

Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            +    L  L  A A    G SR   L     I          + +    +FA +     
Sbjct: 862 GVPSAALTRLAEADAFAALGLSRRDALWQARAI----------QADTPLPLFAQDMDGEV 911

Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
                      +       +   L      HPL + + IL
Sbjct: 912 IAEPAAHLPRMSLGEEVVEDYIALRLSLRSHPLALLRHIL 951


>gi|253315124|ref|ZP_04838337.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            str. CF-Marseille]
          Length = 967

 Score =  712 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/836 (34%), Positives = 452/836 (54%), Gaps = 48/836 (5%)

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
              +  V   N  + + +D +    L A+  +  +      +     +     E+  +  D
Sbjct: 53   QGIKHVWIQNVCYQTRQDADTISALAAIRDNAKL-DLIHDQEDFGAHFLTEKEIKQL--D 109

Query: 267  L-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
            +  E L     IA++C+  L+ H  +LP++     +             A   L   L  
Sbjct: 110  INQEYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDES------------AKKYLWRVLVT 157

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                   +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ VGPGRGS AGS+
Sbjct: 158  QLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSL 217

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+YVQ KYG   V+ 
Sbjct: 218  VSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQEKYGELHVSG 277

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
            I+TFG L A+A  RDVGR +      ++ +  LIP+     ++L        F++    +
Sbjct: 278  IVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEAYQIDDFKKFVHRN 335

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
               +R   I +KLEGL RH STHAAGI+I D PL +  P+ +       +TQ+ M   E+
Sbjct: 336  HRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG--LLTQWTMTEAER 393

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL+   T GIFQLE
Sbjct: 394  IGLLKIDFLGLRNLSIIHQILIQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLE 453

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+  +HP ++P+LK 
Sbjct: 454  SDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKN 513

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ FI GA +NG  + 
Sbjct: 514  TYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGAKQNGYHED 573

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  ++  + + +K  +
Sbjct: 574  ISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQ 633

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFD 863
              ++A++  I I+PP++N     +K     IY S+  IKGVG  + + I++    +  F 
Sbjct: 634  MIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKVIVDERYQNGKFK 693

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
               DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +      +E++     
Sbjct: 694  DFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDGDLNIEQD----- 748

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD------VYKPILRK 977
              +F       + K   E       ++  + E+  LGFY S HP+D       Y  I + 
Sbjct: 749  GFLF----DILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVDKKFVAKQYLTIFKL 804

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               + Y+  +                 +Q +T+ G  + +VT ++  +  +   FP
Sbjct: 805  SNAQNYKPILVQFDK-----------VKQIRTKNGQNMAFVTLNDGIETLDGVIFP 849


>gi|108804744|ref|YP_644681.1| DNA polymerase III subunit alpha [Rubrobacter xylanophilus DSM 9941]
 gi|108765987|gb|ABG04869.1| DNA polymerase III, alpha subunit [Rubrobacter xylanophilus DSM 9941]
          Length = 1084

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1051 (28%), Positives = 479/1051 (45%), Gaps = 70/1051 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL   S +S   G  +   +    A     A+A+TD + L+           AG+ P
Sbjct: 3    GFAHLHARSGFSYGFGVATPEELAGAAARMGMWALALTDRDGLYGVPRLLAACEGAGVSP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G ++ ++                    +VLL +  EGY+ L  L++      + ++  
Sbjct: 63   IVGAEVGMEEGG----------------HVVLLAAGMEGYRSLSRLITAYRCSSEDRRRP 106

Query: 130  RICLSWLQEIGTEGLIMLTGG-SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQ 187
               L  L E   EGL+ LTG    G + R       + A K +   ++ FG   ++  L 
Sbjct: 107  VCPLPVLLE-HAEGLVCLTGAVPFGLLPRLVLSGREKQARKVVGLLREAFGAAGVFAELS 165

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
              R    R R ++V   A    LP+VATN + +L  ED+  H+VL+A ++ T +      
Sbjct: 166  DDRTAGSRRRMARVAAFARECGLPVVATNEAAYLRPEDHRLHEVLVAASNLTRLPGPGYR 225

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV-HAPILPRFIEKECDDIQK 305
              T   +LK    M  +F   PEAL N   +A RC+  +++     +P  +  E +    
Sbjct: 226  P-TDQLWLKPPGAMRRLFEGYPEALANAALVAERCAGSVRLSGKVHMPAAVLPEGE---- 280

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E  L      G   R        G       +RL  EL  I  +  + YFLI  +  +
Sbjct: 281  TAEGRLARLVGEGARRRY-------GRPGDRVWRRLRRELACIGALGHAAYFLIAHEAKE 333

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
             A++  +PV  GRGS A S+ AY L +T  +PL   LLFERFL+  R   PD D+D   +
Sbjct: 334  IARERGVPVS-GRGSAANSMVAYCLGLTSPEPLGNRLLFERFLHEGRKDPPDIDLDLDSE 392

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--- 482
             RD V   +  +YG    A   T  ++  + A+R   RAL  P  ++DRL + +P     
Sbjct: 393  LRDGVRNELMGRYGRHGAAVAATAETMSLRGAVRVAARALGHPPEEIDRLSRHVPARFRD 452

Query: 483  -----PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--G 535
                        +A+ + +              LLE+S +L G    A TH  G+V    
Sbjct: 453  RDRVYAGIDGWEEALREPAMRGHPLRDRRRHRLLLELSARLCGRLWQAGTHNGGVVFGTA 512

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
            +R LS+LVP+    +  L   Q++   +E  GL K D LGLK  T L+K+ +  + R G 
Sbjct: 513  ERHLSELVPLEPSGKEGLLRCQYDKDDLEYVGLPKLDLLGLKMHTALRKAGELASARLGE 572

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD   +P  D  TY L+ T  T GIFQLES G       ++P    D++A VSL+RPGP
Sbjct: 573  EVDPYALPPGDGATYALIRTGRTAGIFQLESPGQMSLSTRLKPRRFPDLVAQVSLFRPGP 632

Query: 655  I--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +  D +  Y NR+NG+E        ++P+L+ T GV+++QEQV+++   ++G+SL+E D+
Sbjct: 633  VRGDLVTPYVNRRNGREPYTVPLEELEPVLRPTYGVMVFQEQVLEVCHRVAGFSLAEGDL 692

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +RRAM + +    M + +ERF+  A   G+ +  A  +FE +  F+ YGF+ +H A++A 
Sbjct: 693  VRRAMTRARGPGAMRELRERFVGSAVGRGVPREKAEEVFEWMEGFSVYGFSAAHGASFAE 752

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            I+Y +A+M+ HYP EF    +  +       +    +AR+  + ++PP ++     F V 
Sbjct: 753  IAYASAYMRVHYPAEFFCGLLNSQPMGFYSPRVLLNEARRAGLSVLPPDIHLSGEGFTVE 812

Query: 832  DN--RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +   +   L+  KG+       I+     +PF S  D   R     + R  L  ++ AG
Sbjct: 813  GDGTALRVGLSYCKGLSERAIASIVSEREREPFASAADLYRRT---AVERDSLRDMIRAG 869

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--------SDKITLE 941
             LD  G  R +LL       +  +  EK R    E I      ++             + 
Sbjct: 870  FLDALG-DRGRLLG------EAGRLPEKRRRGDQEEIPPAHPASWWAERETRGGGDAPVG 922

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                E++  R E E  VLG     HPL+ Y+  LR++G+   EE+     G  +R+A ++
Sbjct: 923  LPLAEDARERMEWE--VLGLNVRRHPLEPYRAALRELGVVPSEEAKGLAHGRRVRVAGLI 980

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               Q   TR G  + ++   +     +A  F
Sbjct: 981  ECLQHPPTRSGHPVWFLLIEDERGLLQATVF 1011


>gi|255021587|ref|ZP_05293630.1| DNA polymerase III alpha subunit [Acidithiobacillus caldus ATCC
            51756]
 gi|254968975|gb|EET26494.1| DNA polymerase III alpha subunit [Acidithiobacillus caldus ATCC
            51756]
          Length = 993

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/1009 (26%), Positives = 439/1009 (43%), Gaps = 76/1009 (7%)

Query: 30   NNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQG 89
              ++++ A      +AIT+  +L SA      A  AG++ I        +    ++ +  
Sbjct: 2    EALVERAAQLGYAGLAITEECSLISAPRAHVAAREAGLKLI--------LGSRFRLVDGQ 53

Query: 90   KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
            +        +VLLV  A GY  L +L+        GK   R  L W       GL+ +  
Sbjct: 54   E--------LVLLVQDARGYAALAQLIGLARGR-AGKGDYR--LEWADLFPCPGLLAILL 102

Query: 150  GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHE 208
               G                 L   +    +RL + L  R+RG    R + + +      
Sbjct: 103  PDWG------RAGEPPAILAELS--RHWGRERLRLGLVLRYRGDHSQRLAGLRRWMEGTG 154

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDL 267
            +  +A          +    DVL A+     +S+         + +L++R+++ +++   
Sbjct: 155  IRGLACGAVTMARRRERFLLDVLTAIRLGRPLSELGWALAANGEAHLRSRAQLDTLYPQ- 213

Query: 268  PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
               L  T+ +A  C+F L       P         +++  E  LR  A AGL +R   G 
Sbjct: 214  -NLLAETLAVAASCTFSLDSLRYRYPPGTCP----LERSPEEHLRFLAKAGLGLRYPDGI 268

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
              K        ++L+ EL ++  + +  YFL V + +Q+AK   I +  GRGS A SV  
Sbjct: 269  PGK------VARQLEEELRIVHELGYGPYFLTVHEIVQFAKSRGI-LCQGRGSAANSVLC 321

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            YAL IT++DP R +LLF RFL+ +R   PD D+DF  +RR+EVI++V  +YG    A   
Sbjct: 322  YALGITEVDPTRGNLLFSRFLSRERGEPPDIDVDFEHERREEVIQFVFARYGRRHAALTA 381

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            +    + ++ALRD  RAL    ++ D L + +       +  + + +     E+    P+
Sbjct: 382  SVRHYRPRSALRDAARALGFSTAEQDALGRGLAWWDGRRLRPERLREAGFDPES----PA 437

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            V RLL ++  L GL RH S H  G+V+   PL  LVP+     +   V Q++   ++  G
Sbjct: 438  VQRLLVVANALVGLPRHLSQHVGGMVLSAEPLDALVPIEPARMAGRTVIQWDKNDLDLLG 497

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            ++K D L L  L++L+++LD L        L+ IP +D   Y +L    +LG+FQ+ES  
Sbjct: 498  ILKVDLLALGMLSVLRRALDDLG-----CTLADIPPEDPAVYAMLQRGESLGVFQVESRA 552

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKET 685
                L  ++P C  D++  V++ RPGPI   +   Y  R+ G E +    P +  +L+ T
Sbjct: 553  QMSMLPRLKPRCFYDLVIEVAIIRPGPIQGGMVHPYLRRREGLEPVHYPGPEVRKVLERT 612

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKT 744
             GV I+QEQVMQIA   +G+    AD LRRAM   +    +   +ER   G    G   T
Sbjct: 613  LGVPIFQEQVMQIAMEAAGFDGDAADGLRRAMAAWRRHGNLGPYQERLREGLRARGYDDT 672

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
             A  + + +  FA+YGF +SHAA++A++ Y +AW+K H+P  F AA +  +        +
Sbjct: 673  FAQQLCQQIQGFAEYGFPESHAASFALLVYASAWLKCHHPAVFSAALLNSQPMGFYAPAQ 732

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
              ++AR+  + ++P S+     D +     +      ++G+    A+ I+          
Sbjct: 733  IVREARERGVTVLPLSIRHSVWDSRAHGRTLRLGFHQLRGLPREVAQRIVAWREQG---G 789

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              D  + V      R  +E L  AGA +  G  R Q L  +  ++               
Sbjct: 790  ALDPVALVQELGCPRAEVERLARAGAWEEEGLDRRQSLWQVAAVRAATPLPLAPAAEPKM 849

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
             + A    T                 R   +   LG     HPL   +P L+  G +   
Sbjct: 850  ALAATPAAT-----------------RCRIDYAQLGLSLGPHPLHFLRPHLQAEGCRPIA 892

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            E      G   R+A +V  +Q+  T  G+   ++T  + +       +P
Sbjct: 893  ELGRAFAGGARRIAGLVTHRQRPATAHGT--VFLTLEDESDRINVIVWP 939


>gi|171779317|ref|ZP_02920281.1| hypothetical protein STRINF_01162 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
 gi|171281934|gb|EDT47365.1| hypothetical protein STRINF_01162 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
          Length = 1035

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/1026 (28%), Positives = 491/1026 (47%), Gaps = 103/1026 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   + +        I I D +NL++A  F  KA + G++P+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLEGYVKEAKVLGYQTIGIMDKDNLYAAFHFITKAKSEGLRPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L +++Q+NL +            S+ L+     GY+ L+++ SR            
Sbjct: 62   LGLELTLNLQENLSL------------SVYLIARDTTGYKNLMKVSSRQMTSG------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I +  L++  + GL+++     G              E   L F        Y+ +  H 
Sbjct: 103  IQVEDLKDYLS-GLVVIIPDFDG-------------LESLSLPF------EYYIGVNVHS 142

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                            ++ PL+  +   + +  + E   +L A+  +  +S KD      
Sbjct: 143  EE------------RDYDKPLIPLHTVRYFNTNEVETLHMLHAIRDN--ISLKDASAAPQ 188

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               L     +   F    P+ALEN  ++     +        LPRF      + QK  + 
Sbjct: 189  GQQLMACDILTQAFEQKFPQALENLEKLVAEIHYDFNSEL-KLPRF------NRQKPAQE 241

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL     AGL+        AK     +Y++RL  EL+VI +M F  YFLIV D +++ + 
Sbjct: 242  ELIELTEAGLK--------AKNLWLPEYQERLAKELSVIHKMGFDDYFLIVWDLLRFGRS 293

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ +YAL IT IDP++ +LLFERFLN +R SMPD DID     R E
Sbjct: 294  RGYYMGMGRGSAAGSLVSYALDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYRSE 353

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             + YV+N+YG    AQI+TF +  AK A+RDV +    P  ++  + K I          
Sbjct: 354  FLHYVRNRYGSLHSAQIVTFSTFGAKQAIRDVFKRFGAPEHELTNITKKISFKDNLT--- 410

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                 +  FR+   A     +   I++++EG  R  S HAAG+V+ D  L++ +P+    
Sbjct: 411  SVYEKNLAFRQIINAKIEYQKAFAIAKRIEGNPRQTSIHAAGVVMSDDNLTEHIPL--KA 468

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  + +A+   + +D+  I  +D +T
Sbjct: 469  GEDMMITQYDAAAVEANGLLKMDFLGLRNLTFVQRMQEKVAKDYGINIDVKSIDLEDQQT 528

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   EDI+A  SL RPG  D    +  R+ G+
Sbjct: 529  LALFAAGKTKGIFQFEQAGAINLLKRIKPQKFEDIVATTSLNRPGASDYTENFIRRRFGQ 588

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E I  I PL+  +L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  E+M K 
Sbjct: 589  EAIDLIDPLVAKILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKKAEDMQKM 648

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  F+ GA   G     A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 649  ESEFLKGAQALGRPLETAKDLFSRMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 708

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA +   +I    +NT   + K+ D +IY  L  ++ +   
Sbjct: 709  DVMLNYSSAD------YITDAMESEFRIKKIDINTVPYNDKIADGQIYLGLKNLRALPRD 762

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
                I++     PF S+EDF +++      + ++  LV  GA D F  +R +++++L+ +
Sbjct: 763  LCYWIIDHR---PFSSIEDFLTKLPENYQKKELITPLVEVGAFDNFEKNRRKIIENLEPL 819

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++FA     +       +     ++ ++  EQ +LG   S HPL
Sbjct: 820  FIFV--------NELGSLFAENSYNWI------EVEDFPNTEKYRQEQGLLGVGISPHPL 865

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + K     +             +   +   +  +T+ KG ++ ++  ++  K++
Sbjct: 866  L----EIAKNSSVAFTALADLHENTEATILVELSQIRVIRTKTKGEQMAFLNVTDTQKKF 921

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 922  DVTLFP 927


>gi|297626724|ref|YP_003688487.1| DNA polymerase III alpha subunit [Propionibacterium freudenreichii
            subsp. shermanii CIRM-BIA1]
 gi|296922489|emb|CBL57062.1| DNA polymerase III alpha subunit [Propionibacterium freudenreichii
            subsp. shermanii CIRM-BIA1]
          Length = 1181

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/1084 (27%), Positives = 492/1084 (45%), Gaps = 86/1084 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+FVHL+V SSYSL  GA     ++   AA     + +TD + L+ A+ F Q    A I 
Sbjct: 2    PAFVHLRVASSYSLQYGASHPEELVAGAAAAGMTMLGLTDRDGLYGAVRFVQACQQANIS 61

Query: 69   PIIGCQ--------LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            PI+G           D   +        G      +P +V+L  +  G+  L  LV+  +
Sbjct: 62   PIVGVDLAVELCGVPDGARRVRPVPVKGGSLRDEGLPRVVVLARSKAGWAALCRLVTGAH 121

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                  + V     + Q  G  GL +L G  S  + RA   +    A++ L  ++++  D
Sbjct: 122  QAPDRARPVATGQLFGQWAGDGGLSVLLGPDSS-LGRALANHDDHGADRELARWRQVVPD 180

Query: 181  -RLYVNLQRHRGYDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             R+ + +  H G D      +   +V+ A  H L  V TN       +     DVL A  
Sbjct: 181  NRIALAVSDHLGRDGEASLPQAVAMVRFADRHRLECVLTNQVRMARADQAPVCDVLDAAR 240

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE----------ALENTVEIARRCSFIL 285
                ++       T + +LK   +M ++ + + +           L +T  +A  C    
Sbjct: 241  LLQPLTMGRLGLGTGEGWLKPSGQMAAVAARISDGAGRDDRGRRLLADTRVLAEECVLDP 300

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            +    +    +    D  ++     LR + +AGL  R          +     QRLD EL
Sbjct: 301  KRDIGLGEIHLPGVPDANRR-----LRERCLAGLPRRY-------RGNTTMVEQRLDAEL 348

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VI     + YFL VA  +   +   +     RGSGAGS+  + L I+ +DP+R+ LL E
Sbjct: 349  GVIEGCNMASYFLTVAGVVDMVRGAGLRC-TARGSGAGSLVNHLLGISGVDPMRYGLLME 407

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFL+ +R  +PD D+D    RR ++ R V +++G ++VA +    + +A+ ALRDVG AL
Sbjct: 408  RFLSAERDKLPDIDLDVESARRTDIYRMVLDRFGADQVACVAMVETYRARHALRDVGAAL 467

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
             +P  ++D + K  P+  A  V   A+A+    R A + +     +L++ + L+GL RH 
Sbjct: 468  SVPPGEIDAMAKAFPHIRADQVR-NALAELPELRSAGINEERFGVVLDLVEGLDGLPRHL 526

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            + H  G++I D+ L    P+     SD P++Q++   +E+ GL+K D LG++  + +  +
Sbjct: 527  ALHPCGVIISDKTLYDRSPVQTSA-SDFPMSQYDKDDVEEMGLLKLDVLGVRMQSAIAHA 585

Query: 586  LDFLAQR---GVKVDLSL-IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            LD +          DL    PFDD E Y L+    TLG FQ+ES G R+ +    P C  
Sbjct: 586  LDEIRHTEGPEEVPDLEELEPFDDPEVYELIDHSQTLGCFQIESPGQRELVGKFAPTCFN 645

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DII  +SL+RPGP+  D +  + + + G      +   + P+L ET GVI++ EQV++I 
Sbjct: 646  DIIIDISLFRPGPVKADMVSPFLDARAGWVSPSYLDERLRPILAETYGVIVFHEQVIRII 705

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
              ++G  L  AD +RRA+G          +E F   A  NG  +  A  I+  L  FA +
Sbjct: 706  AEVTGKGLGRADEMRRALG--SMSAKPAVQEWFFKYARLNGYDQGQATRIWAALESFASF 763

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GF K+HAA+++V +YQ+AW+K H+P +FLA  +T +     K +   ++AR+ +I ++  
Sbjct: 764  GFCKAHAASFSVPTYQSAWLKRHWPAQFLAGILTHDPGMYPK-RLLLEEARRMSISVLGI 822

Query: 820  SVNTPCVDFKVGD-------------------NRIYYSLAAIKGVGTTTARHIMEASADK 860
             VN+    F                         I  SLA + G+       I+   A +
Sbjct: 823  DVNSCSGSFHAEPVEADPQMPAPPAGLPDARDWGIRLSLADVAGITDDMIGSIV---AGQ 879

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY------------SRMQLLQSLDNI 908
            P+D L DF +R     ++  V E+L+  G LD                +R  LL +L ++
Sbjct: 880  PYDDLSDFFAR---SHVSAPVAENLIMVGGLDSLYGIDPDRPSGAGRVTRRDLLLTLGDL 936

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             + A    +       ++        +  +        + + R + E  VLG   S H +
Sbjct: 937  VRDA-RAGRRAHGAATSLQGTFDFAAAGDVEPSGLPEMSRAERTQAELAVLGMDVSRHIV 995

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            + Y+ +L+ +G     + +       + +A + V+ Q    R G R+ +++  +     +
Sbjct: 996  EFYQEMLQGLGWVPAAQLLDHRNHEEVLVAGVKVATQTPPVRSGRRVVFLSLDDSTGPVD 1055

Query: 1029 ANFF 1032
            A FF
Sbjct: 1056 ATFF 1059


>gi|29833097|ref|NP_827731.1| DNA polymerase III alpha subunit [Streptomyces avermitilis MA-4680]
 gi|29610219|dbj|BAC74266.1| putative DNA polymerase III alpha subunit [Streptomyces avermitilis
            MA-4680]
          Length = 1161

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/1079 (25%), Positives = 466/1079 (43%), Gaps = 91/1079 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL   S +S   GA     + ++ +     A+A+TD + L   + F++   AAG++
Sbjct: 2    PGFTHLHTVSGFSPRYGASHPERLAERASERGMDALALTDRDTLAGTVRFAKACAAAGVR 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTP-------FPTVPSIVLLVS-TAEGYQRLIELVSRMY 120
            P+ G +L +      +   + + P         + P +  L    A G+  L  +V+  +
Sbjct: 62   PLFGAELMVASAGEREHGGKRRAPVRGGAFIDESTPRVTFLAREGAAGWADLCRIVTASH 121

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
              +      +  L W  +   EGL +L G  +  + RA        A + L  +++++GD
Sbjct: 122  TGEG-----QPLLPW-PDNHAEGLTVLLGP-ASDVGRALAAGRPDRAARLLAPWREVYGD 174

Query: 181  RLYVNLQRHR----GYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             L +    H     G    R + + V  A    +  V +N   +         DVL A  
Sbjct: 175  ALRLEAVWHGRKGTGPGSLRLAARTVGFAAEQRVRPVLSNAVRYADPGMGPVADVLDAAR 234

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARRCSFI 284
               V     +   + + +LK+   M+     + EA           LE T   A  C   
Sbjct: 235  -RLVPVDPTKELDSGEAWLKDADAMLGAAERIVEAAGYRRDTAYRLLEQTQATAAECLVD 293

Query: 285  LQVHAPILP-RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLD 342
             +    I    F E              R  A   L  R A G +  GY   +DY +R+ 
Sbjct: 294  PEDDLGIGTVHFPEPHLVGAG-------RRTAQRVLTSRAAAGMVRHGYADRRDYWERMH 346

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             EL++IA   F+ YFL VA  +   +   I V   RGSGAGS+  + L I   DP+   L
Sbjct: 347  RELDIIAHHGFASYFLTVAQVVDDVRDMGIRVA-ARGSGAGSLVNHLLGIAHADPVEHGL 405

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            L ERFL+  R  +PD DID    RR EV R +  ++G ERVA +    + + + A+RDVG
Sbjct: 406  LMERFLSKRRAVLPDIDIDVESARRIEVYRAIIGRFGTERVATVAMPETYRVRHAIRDVG 465

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA----RLADPSVDRLLEISQKL 518
             AL M  + +DR+ K  P+  A      A+A+    RE     R       +L E+ + L
Sbjct: 466  AALSMDPADIDRIAKSFPHIRARDARA-ALAELPELRELAGEFRREGGRYGKLWELVEAL 524

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            + L R  + H  G+++ D  L    P+       LP++QF+ + +E  GL+K D LG++ 
Sbjct: 525  DALPRGVAMHPCGVLLSDASLLARTPVVPTSGEGLPMSQFDKEDVEDLGLLKLDVLGVRM 584

Query: 579  LTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
             + +  ++  + +  G  VDL  +P  D  TY L+ +  TLG FQ+ES G R  +  +QP
Sbjct: 585  QSAMAHAVAEVERATGTSVDLDAVPPGDPATYRLIRSAETLGCFQIESPGQRDLVGRLQP 644

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
                D++  +SL+RPGP+  D +  +   ++G+  +   HP ++  LKET GV+++ EQ+
Sbjct: 645  ATFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRCPHPDLEGPLKETYGVVVFHEQI 704

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            + I  +++G   +EAD +RR +     E   + +  F   A+  G         +E++  
Sbjct: 705  IDIVDIMTGCGRAEADRVRRGLS--DPESQGRIRFWFAQHAAVRGYDAETIQRTWEIVEA 762

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+  + 
Sbjct: 763  FGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRGVP 821

Query: 816  IMPPSVNTPCVDFKVG----------------------DNRIYYSLAAIKGVGTTTARHI 853
            ++P  VN   V  ++                          +  +L+ + G+    A  I
Sbjct: 822  VLPLDVNRSAVAHRIELVSESGDPSGGSSGGPSGGSPGRWGVRLALSDVHGISEAEAARI 881

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
             +    +P+ SL DF  R    + +R + + L   GALD FG +R  L   L  + +   
Sbjct: 882  AD---GQPYASLLDFWERA---RPSRPLAQRLAQVGALDAFGANRRDLQLHLTELHR--- 932

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
               +        +        +    L      +S+ R   E  VL    S H +D ++ 
Sbjct: 933  -GARGGGGGQLPLTGGRGTASAGLPDL------SSAERLSAELGVLSMDASRHLMDDHRE 985

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             L ++ +           G  + +A    + Q    R G R+ + T  +     +  FF
Sbjct: 986  FLDELRVVSARRLREARHGETVLVAGAKAATQTPPVRSGKRVIFTTLDDGTGLVDLAFF 1044


>gi|116748373|ref|YP_845060.1| DNA polymerase III subunit alpha [Syntrophobacter fumaroxidans MPOB]
 gi|116697437|gb|ABK16625.1| DNA polymerase III, alpha subunit [Syntrophobacter fumaroxidans MPOB]
          Length = 1003

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/1035 (27%), Positives = 489/1035 (47%), Gaps = 91/1035 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL VHS YS++ G  S+  +    +A     +A+TD    +  + F   A   GI P
Sbjct: 4    TFVHLHVHSHYSMMRGVSSVTALCRTASALGFEHLALTDDKGFYGLINFLDAARRFGIHP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G  +                      + V+L  T  GY+ L EL +R +L        
Sbjct: 64   IVGTTIGTGPD-----------------TAVVLAKTPRGYELLSELTTRRHLD------- 99

Query: 130  RICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                S L++   G   L++LT                    K L   ++       V + 
Sbjct: 100  -ADFSLLRDFPDGRRDLVVLTANP--------------EIIKALHPRRECG-----VEVV 139

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRP 246
               G     + +++++A++  +P VATN   F   EDY  H ++ A+  + T+ +     
Sbjct: 140  PGPG-----DRRLLKMAHSLGVPPVATNAVHFAHLEDYSLHRLVRAIDLNLTLSNIPREE 194

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             V PD +L++ ++M       PEAL NT+++A  C         I P +      D +++
Sbjct: 195  IVRPDQWLQSAAQMERRLPHCPEALANTLKLAGECHTKWDHFRTIFPHYR-----DRRED 249

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L  K   G+  R        G  +    +RL  EL++I    +  YFL+VAD +  
Sbjct: 250  HFALLLEKCRKGISWRY-------GRTSPAVEERLAEELDLIGAKGYVDYFLVVADIV-- 300

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
                  P+  GRGSGA S+ +Y L IT +DPLR +LLF RFLNP+R  +PD D+DF  D 
Sbjct: 301  ---GRRPIHCGRGSGAASLVSYLLGITHVDPLRHNLLFGRFLNPERKDLPDIDVDFPWDE 357

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD++   ++  YG ER+A +       A+AA+R+V R   +P +++  + + +       
Sbjct: 358  RDDLFEELRRHYGAERMATVANHVGFGARAAVREVARVYGVPAAEIKEVTRRMSFWTEPG 417

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               + I    +FR   L DP    +++++ +LE L RH S H  G++I    +S+ VP+ 
Sbjct: 418  AMWERIGTHPKFRGFPL-DPPWPEIIDLAGRLESLPRHLSMHCGGVIIAPDRISRHVPVQ 476

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS---LIPF 603
            R  +    + Q+     EKAGL+K D LG ++L +++ SL  + +     DL    L P 
Sbjct: 477  RSAKGAR-IIQWEKDQAEKAGLVKIDLLGNRSLAVIRDSLAAIRENY-GKDLEYARLNPV 534

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +T   + T  T+G+F +ES  MR   +       E ++   S+ RP     I  Y +
Sbjct: 535  DDPDTREQIRTGRTMGVFYVESPAMRLLQQKAGCGDFEHLVIHSSIIRPAANRYIRDYLD 594

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R +G      +HP +  +L E  G+++YQE V+Q A +L+G+S  EAD LR+ + KK +E
Sbjct: 595  RLHG-APYEPLHPSLAGLLAENYGILVYQEDVVQAAMILAGFSWGEADGLRKVISKKSRE 653

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            ++   + RF  G +  G+S  +   ++E+   F+ Y F K H+A+YA++S+++A++K HY
Sbjct: 654  QLSDYRSRFARGCAARGVSPDVVDRVWEMFISFSGYSFCKPHSASYALVSFKSAYLKAHY 713

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P EF+AA ++           +  ++R+  + +  P +N    +++ GD  +   L  ++
Sbjct: 714  PAEFMAAVLS-NGGGYYSTFAYVSESRRMGLTVAGPDINESAWNYRGGDRCVRMGLRQLQ 772

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF--GYSRMQ 900
             +  +T   I+     + PF S+E+   RVD    +  +L     +GALD    G +R +
Sbjct: 773  NIRRSTLEDILAERGKNGPFASVEELLRRVDIPPSDGMILAR---SGALDSLSGGLNRPR 829

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL  ++        V+    +   + F   +     +I +      +    + +E   LG
Sbjct: 830  LLWFIE-AWFNGAGVKGTAGHGQISAFPRPRA----RIVVPPLPGFSPRQTWRHEMETLG 884

Query: 961  FYFSGHPLDVYKPILRKM--GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            F  S HPL + +P+ RK+   +    +    + G  +  A   +++++  TR+G  + +V
Sbjct: 885  FVLSVHPLAMVEPMARKLPHRVTKAADLHRHV-GERVCTAGWPITRKEVLTREGEPMEFV 943

Query: 1019 TFSEPAKEYEANFFP 1033
            +F +    YE  FFP
Sbjct: 944  SFEDRTAIYETVFFP 958


>gi|229820774|ref|YP_002882300.1| DNA polymerase III, alpha subunit [Beutenbergia cavernae DSM 12333]
 gi|229566687|gb|ACQ80538.1| DNA polymerase III, alpha subunit [Beutenbergia cavernae DSM 12333]
          Length = 1194

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/1153 (24%), Positives = 477/1153 (41%), Gaps = 150/1153 (13%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS++S L+GA     ++ + A  +  A+AITD + L+  + F++ A A G++ 
Sbjct: 8    RYAELHAHSAFSFLDGASQPEALVAEAARLELDAVAITDHDGLYGVVRFAEAARALGMRS 67

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-------L 122
            + G +L +D     + T     P P    +V+L     GY RL   ++  +L        
Sbjct: 68   VFGAELSLD-----QRTPATGVPDPDATHLVVLARGPAGYHRLSRAIATAHLATGKKGER 122

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF---------------------F 161
            D G       L  L E      ++LTG   G + RA                        
Sbjct: 123  DYGHAVGLDPLEVLAEQAAGDWLVLTGCRKGAVRRALDGGADGADGAGGAGGAGSIAGAE 182

Query: 162  NSSQVAEKRLLTFKKLF-GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLF 219
            +  + A + L     LF  D + V L       D  R   +  LA    LP+VAT     
Sbjct: 183  HGERAAARELDRLVALFGRDNVAVELTDLGAPADSARCDTLADLAARAGLPVVATGGVHC 242

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
                +    DVL AV     + + D        +L++  EM++  +  P+A+    E+  
Sbjct: 243  AHPREGRLVDVLAAVRARRSLEEIDGWLPPAPAHLRSADEMLARHARHPQAVRTAAELGL 302

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
             C+F L + AP LP        D    E + LR   +     R       +      Y  
Sbjct: 303  ECAFDLTLVAPRLPPHPVPPGYD----EASWLRELTMRCARTRYG----TRDERPDAY-A 353

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
             +D EL++I R+ F GYFLIV + + +  +  I +  GRGS A S   YAL IT +D ++
Sbjct: 354  IIDRELDIIVRLGFPGYFLIVHEIVDFCVQQGI-LCQGRGSAANSAVCYALGITAVDAVQ 412

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              LLFERFL+  R   PD D+D    RR+EVI++V  +YG E  AQ+    S + ++A+R
Sbjct: 413  HKLLFERFLSDGRSGPPDIDVDIESGRREEVIQFVYTRYGREHAAQVANVISYRPRSAVR 472

Query: 460  DVGRALQMPYSQVDRLCKLI----------PNDPAHPVSLQAI---------------AD 494
            D  RA      Q D   K I          P +P   V   A                A 
Sbjct: 473  DAARAFGYDVGQQDAWSKGIERWGTLRGPDPGNPDPAVKANATSTSSTSSSPSRATGTAA 532

Query: 495  DSRFRE-----------------ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
              + RE                 AR      + +L++++++  L RH   H+ G+V+  R
Sbjct: 533  GPKIREKGVDTHDPAPPRHAPASAREMGEIPNHVLDVAEQMLRLPRHLGIHSGGMVLCHR 592

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKV 596
            P+ ++ P+         V Q++      AGL+KFD LGL  LT L+ + + + A  G ++
Sbjct: 593  PVIEVCPVEWATMPGRTVLQWDKDDCADAGLVKFDLLGLGMLTALRLAFEQVEATSGERL 652

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             L  +P +D + Y LL    T+G+FQ+ES      L  ++P    DI+  V+L RPGPI 
Sbjct: 653  ALHSLPQEDPKVYELLCAADTVGVFQVESRAQISTLPRLKPRNFYDIVVEVALIRPGPIQ 712

Query: 657  --NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
              ++  +  R+NGKEK+  +HPL++  L +T G+ ++QEQ+MQIA  ++G+S SEAD LR
Sbjct: 713  GNSVHPFIRRRNGKEKVTYLHPLLEGALSKTLGIPLFQEQLMQIAIDVAGFSGSEADQLR 772

Query: 715  RAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RAM  K+  E+M+   ER ++G +  G+ + +   I++ L  F+D+GF +SHA ++A + 
Sbjct: 773  RAMGSKRSLEKMEALHERLLAGMADRGVPRDVGEQIYDKLKAFSDFGFPESHAFSFAYLV 832

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y +AW+K H+P  F A  +  +            DAR+  + +   S+    V   V   
Sbjct: 833  YASAWLKIHHPEAFFAGLLGAQPMGFYSPASLVADARRHGVVVRRASIADSAVHALVEHG 892

Query: 834  RIYYS-LAAIKGVGTTTARHIMEASA-------------------------DKPFDSLED 867
               +  +  +     ++   +++A                             P  S   
Sbjct: 893  AADHGAVGLVPRATQSSETWLVDAGKADARGAAAVDPALPLDPAADAEDADGGP--SGRR 950

Query: 868  FCSRV---DSKKLNRRVLESLV----FAGALDCFGYSRM-----QLLQSLDNI------- 908
            F  R+     + +  +  E +V     A   D    +R        L++L          
Sbjct: 951  FAVRLGLAPIRGIGEKTAERIVTERDRAPFADAQDLARRVRLTAAQLEALATAGALRCFG 1010

Query: 909  --QKYAQWVEKNRTNK--------HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              ++ A W       +           +     G  +  +        ++      +   
Sbjct: 1011 TSRREALWSAGALAGESGRVHLTSQGTVVQDVLGGTASGVAAPALPGMDAFEVASADVWA 1070

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             G     +P +  +P L   G++          G  + +  +V  +Q+  T  G  + ++
Sbjct: 1071 TGLSPDRYPTEFVRPGLDAAGVRPVATLGGIENGARVEVGGVVTHRQRPGTAGG--VTFL 1128

Query: 1019 TFSEPAKEYEANF 1031
            +  +         
Sbjct: 1129 SLEDETGLLNVIC 1141


>gi|213965050|ref|ZP_03393249.1| DNA polymerase III, alpha subunit [Corynebacterium amycolatum SK46]
 gi|213952586|gb|EEB63969.1| DNA polymerase III, alpha subunit [Corynebacterium amycolatum SK46]
          Length = 1079

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1029 (26%), Positives = 435/1029 (42%), Gaps = 92/1029 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   SSYS L GA     ++ + A      + + D +  +                  
Sbjct: 76   AELHCRSSYSFLHGASDPEELVSEAARLGLNVLGLADRDGFYG----------------- 118

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
              +      +    T  G         + +L    EGY+RL   +   ++    K  VR 
Sbjct: 119  IARFAEAAAEAGIATIIGAELGLPQRPLTVLGRGPEGYRRLSHTLCDAHMSAGEKSVVRY 178

Query: 132  C-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              L  L E       +L       +       ++  AE   L  +        V+     
Sbjct: 179  PSLPELGEAAGGFWQVL--ADVSWVGDLEMLIAAFGAENVALEHR--------VSPTAQA 228

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS-QKDRPRVT 249
              D     ++   A  + L  V ++ +   S           A+A    +   + R    
Sbjct: 229  ADDAE---EISTAAVKYGLREVVSSAATAASPAASRLAGAKQALAVREDLDGFESRLEPA 285

Query: 250  PDHYLKNRSEMVSIFSDLP-EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
               +L++  E+ +    L  + ++ T +IA  C+F L + AP LPR+      D    E+
Sbjct: 286  GGAWLRSWEELSAATRYLGAQVVQTTQDIAGECAFTLDLIAPELPRWEVPAGHD----ED 341

Query: 309  NELRNKAVAGLEVRL-AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + LR  A AG   R         G        +L+ EL VI  + F GYFLIV D  ++ 
Sbjct: 342  SWLREIARAGARRRYGPVDGAGDGSVQARAWAQLENELTVIRELGFPGYFLIVHDICEFC 401

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I +  GRGS A SV  +AL IT++DP+   LLFERFL+P+R   PD D+D    RR
Sbjct: 402  RRTGI-LAQGRGSAANSVVCFALGITNVDPISAGLLFERFLSPERDGPPDIDVDIESGRR 460

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+YV  KYG +  AQ+    + + + ALRD  R L      +D              
Sbjct: 461  EEVIQYVYEKYGRDNAAQVANVITYRRRGALRDAARVLGYSPGVIDAWV----------- 509

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                     R REA   +P    + +++++L G  RH   H+ G+VI DRP++ +VP+  
Sbjct: 510  ---------RDREACPTEP----VRQLAEQLRGQPRHLGIHSGGMVICDRPIADVVPVEW 556

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDH 606
                   V Q++      AGL+KFD LGL  L  +   +D +  Q G +V+L  I   + 
Sbjct: 557  ARMEGRSVVQWDKDDCAAAGLVKFDLLGLGMLEAIHHCIDLVYEQHGRRVNLWEIDVAEP 616

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNR 664
            E Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI       Y  R
Sbjct: 617  EVYEMLARADAVGVFQVESRAQLATLPRLKPREFFDLVVEVALIRPGPIQGGSVHPYIRR 676

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723
            +NG E +   HP+++  L +T G+ ++QEQ+MQ+A   +G+S +EAD LRRAM  K+   
Sbjct: 677  RNGLEPVTYEHPVLEKSLGKTLGIPLFQEQLMQMAVDAAGFSGAEADSLRRAMGSKRSVA 736

Query: 724  EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            +M+    RF++G  + +GI + +   ++  +  FA YGF +SHA ++A + Y +AW K H
Sbjct: 737  KMEALHARFLAGLERTSGIDEDVGEQLWNKIVAFAAYGFPESHAQSFASLVYFSAWFKYH 796

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP EF  A +  +       +    DAR+  I    P +    V+  V D RI   L AI
Sbjct: 797  YPAEFCVALLRAQPMGFYSPQSLIADARRHGIGCDGPDIALSGVEASVIDGRIRLGLGAI 856

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             GVG   A  I+ A    PF +  D   R      +   +E+L  AGAL   G  R Q L
Sbjct: 857  AGVGNDVAERIVAAR---PFVNAADVARRARLGVGH---MEALARAGALGSLGIDRRQAL 910

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
                     A  V    +            T +D   L   +    +     +    G  
Sbjct: 911  W--------AAGVAATESEGMLP-----GLTLADAPALPGMTEFELA---AADLMATGVT 954

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
               +P+   +  L++ G+    E  A   G  + +A +V  +Q+  T  G  + ++   +
Sbjct: 955  PGQYPVAALREDLQERGVVPAAELKAVPDGTRVEVAGVVTHRQRPGTAGG--VTFLGMED 1012

Query: 1023 PAKEYEANF 1031
                     
Sbjct: 1013 ETGLVNVLC 1021


>gi|167822588|ref|ZP_02454059.1| error-prone DNA polymerase [Burkholderia pseudomallei 9]
          Length = 882

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/891 (28%), Positives = 401/891 (45%), Gaps = 49/891 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            R+    L         +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 124 YRLTPRMLAAPPRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLVQ 183

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D     QV        + +VA  +            D + A+     +++     
Sbjct: 184 LQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHAL 243

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 244 APNGEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----HT 297

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D +++
Sbjct: 298 PTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVKY 351

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A+  +I +  GRGS A SV  Y + +T+++P + +LLFERFL+ +R   PD D+DF   R
Sbjct: 352 ARSKDI-LCQGRGSAANSVVCYCIGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQR 410

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 411 REEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 470

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             L   A      E     P +    EI+ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 471 DLLARFASVGLDPEV----PLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVE 526

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                   V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 527 NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 586

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
            IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 587 HIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 646

Query: 659 -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 647 VHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 706

Query: 713 LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           LRRAM   K K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A 
Sbjct: 707 LRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAK 766

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
           ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 767 LAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASLE 826

Query: 831 ---------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                    G   +   L+ ++G+G   AR I  A A  PF S+++   R 
Sbjct: 827 AQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRA 877


>gi|194291640|ref|YP_002007547.1| error-prone DNA polymerase [Cupriavidus taiwanensis LMG 19424]
 gi|193225544|emb|CAQ71490.1| DNA polymerase III, alpha subunit [Cupriavidus taiwanensis LMG 19424]
          Length = 1121

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/1104 (22%), Positives = 446/1104 (40%), Gaps = 117/1104 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +V L   S+++ L GA     ++++        +A+TD  ++               +
Sbjct: 2    PDYVELHCISNFTFLTGASHPGELIERAFGLGYSGLALTDECSVAGTARAHDAIETLRKR 61

Query: 69   PIIGCQLDIDMQ----DNLKMTNQGKTPFPTVPS-------------------------- 98
                 +          D   + ++        P                           
Sbjct: 62   LHDAVERSAARGEEGVDEPLLDDEASDAGDDDPHAHASRHQRLQALARAADAFRLLIGSR 121

Query: 99   ---------------IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE--IGT 141
                           +VL+    EG+  L EL++      Q K S R+    L E   G 
Sbjct: 122  FSLTPADGSERAPLRLVLIAQHREGFGNLSELITLGRRRAQ-KGSYRLHPEDLSEPAAGE 180

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQV 200
              L  + G  +  +         +    +    + +FG+R ++ L++ +G+ D    +++
Sbjct: 181  AHLRGMPGCVALLLPDYCAE--PERLLAQAEWCRAVFGERAWIALEQLQGHADALHRARL 238

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSE 259
              ++    +PL A               DVL A+     +++         + +L+ R  
Sbjct: 239  EAVSAQTGVPLAAAGAVTMHVRSRKPLSDVLTAIRLGQPLAECGMALAPNAEQHLRMRQV 298

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            +  ++    EAL  T++IA  C F L       P  +    +       + LR +   G 
Sbjct: 299  LSRLYPR--EALAQTLKIAESCDFSLATLRYEYPEELVPPGE----TPISYLRKEVERGK 352

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
              R   G   +          L           +  +FL V D +++A+   I +  GRG
Sbjct: 353  RERFPNGLKPEWEEQLKEELELI------EEKHYEPFFLTVHDIVRFARSRGI-LCQGRG 405

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            S A S+  + L +T++ P + +LLF RFL+ +R   PD D+DF   RR+EVI+Y+ +KYG
Sbjct: 406  SAANSLVCFCLYVTEVSPEQANLLFGRFLSRERDEPPDIDVDFEHQRREEVIQYIYDKYG 465

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
              R A   +  + ++++ALRDVGRAL +  S V+++ K        P  +  IA      
Sbjct: 466  RHRAALAASLITYRSRSALRDVGRALGIDASVVEQVVKGQAWWDGGPGFVDKIAR----Y 521

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
                  P+V +   ++ +L G  RH S H  G VI    LS+LVP+     +D  V Q++
Sbjct: 522  GLDPESPAVQQWASLTAQLRGFPRHLSQHVGGFVIARHKLSRLVPIENAAMADRSVIQWD 581

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-------AQRGVKVDLSLIPFDDHETYHLL 612
               +E  GL+K D L L  L+ ++++L+ +       A+ G+   +  IP +D  TY ++
Sbjct: 582  KDDLESLGLLKVDVLALGMLSAIRRALEMIPNPSRDPARAGLPARMEDIPKEDKPTYDMI 641

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR----KN 666
                T+G+FQ+ES   +  L  +QP    D++  V++ RPGPI   +   Y  R    + 
Sbjct: 642  CRADTIGVFQIESRAQQSMLPRLQPREYYDLVVEVAIVRPGPIQGGMVHPYLKRREAFRR 701

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEM 725
             ++  V  + +I+ +L  T GV I+QEQVMQ+A   +G+S  +AD LRR+M   + + ++
Sbjct: 702  TQKPPVYFNAVIEKVLGRTLGVPIFQEQVMQLAIDAAGFSPGQADQLRRSMAAWRRRGDL 761

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             + ++  +   + NG  ++ A+ I + +  F +YGF +SHAA++A + Y ++W+K H+P 
Sbjct: 762  RQHQDALVRALTGNGYPESFALAICKQIEGFGEYGFPESHAASFAKLVYVSSWLKCHHPA 821

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-------------- 831
             FL A +  +        +  QDAR+ +++++P  V     D  +               
Sbjct: 822  AFLCALLNSQPMGFYSPSQLVQDARRHDVEVLPVDVTISRWDSTLEPVAESDAAIIRQER 881

Query: 832  --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                R+   L  +KG+    A  I  A A + FDS+ED   R    + +  VL +     
Sbjct: 882  PPHPRVRLGLGRVKGMREAAALRIEAARAQRAFDSVEDLALRAGLDRHDIDVLAAADALA 941

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
             L              +  Q   Q         H ++                       
Sbjct: 942  PLAG------------NRRQARWQARAAAAHAAHRDLL----YEAPPAEAALALPAPRLG 985

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 +   LG     HPL + +  L  M      +      G  +R   +V  +Q+  T
Sbjct: 986  EDVTADYASLGLSLKSHPLALLRHKLAAMRFATASQLERCANGRRVRACGIVTVRQRPST 1045

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
              G+   + T  +         +P
Sbjct: 1046 ASGT--IFATIEDETGSINLILWP 1067


>gi|225850456|ref|YP_002730690.1| DNA polymerase III subunit alpha [Persephonella marina EX-H1]
 gi|225645313|gb|ACO03499.1| DNA polymerase III subunit alpha [Persephonella marina EX-H1]
          Length = 1574

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/759 (35%), Positives = 410/759 (54%), Gaps = 33/759 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FVHL +H+ YSLL+GA+ +  +  K       A+ +TD  N+F A++F Q+    GI+P
Sbjct: 4   DFVHLHLHTHYSLLDGAIKIPELAQKAVEYGYKAVGMTDHGNIFGAVQFYQEMKKVGIKP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPF--PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           IIG +      +  +   +G           ++L      G++ L++L S  Y       
Sbjct: 64  IIGMEAYFT-SNRFEKKGKGSEDILSDKNYHLILHAKDKTGFKNLMKLSSLAYTEG-FYY 121

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             RI    L+    EGLI  T    G I           A ++    K +FGD LY  +Q
Sbjct: 122 KPRIDWELLERYH-EGLICQTACLKGFIPHLLSQGKFDEAYQQAKRLKDIFGDDLYFEIQ 180

Query: 188 RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ---K 243
            +   ++      +++LA    + +VATN+S +L+ ED +AHDV+ A+     V++   +
Sbjct: 181 INGLPEQEVANKGIIELARKLGVKIVATNDSHYLNPEDQKAHDVIKALQMKKTVAELKKE 240

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILPRFIEKEC 300
            +       +     EM   F    EAL NTVEIA +C+  ++       + P++     
Sbjct: 241 GKVFQVTGLHFTKPEEMYRKFKGYEEALRNTVEIAEKCNVEIETADTRGYLFPKYQIPGL 300

Query: 301 DDIQKEEE--NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
           D    EEE        +  GLE RL++         ++YR+RL +E++VI +M F  YFL
Sbjct: 301 DREATEEEKVEYFEKLSWEGLERRLSEKKDLPKSKIEEYRERLRYEIDVIKQMGFPEYFL 360

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           IV DFI +AKKN IPVGP RGS AGS+ AY L ITD+DPL+  L+FERFLNPDR+SMPD 
Sbjct: 361 IVQDFINYAKKNGIPVGPARGSAAGSLVAYTLGITDVDPLQHGLIFERFLNPDRISMPDI 420

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DFC + R +VI YV+ KYG + VAQIIT+  +++K  +RDV RAL   YS+ DR+ K+
Sbjct: 421 DVDFCMENRGKVIEYVKEKYGEQSVAQIITYNFMKSKMVIRDVARALGFSYSEADRIAKM 480

Query: 479 IPNDPAHPVSL---QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
           I   P    +L   + +  +  FR+    D  V  L+++++KLEGL RH   HAAG+VI 
Sbjct: 481 ILPGPVQGSTLTIDENLEANPEFRKLYETDEKVRELIDLARKLEGLARHTGIHAAGVVIA 540

Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
             PL + VP+Y D +     TQF+M  +E  GL+K DFLGLKTLT L    + + +R  +
Sbjct: 541 PGPLDEFVPVYVD-KDGTKATQFDMNTLETLGLVKMDFLGLKTLTELNYMKNLIKERHGI 599

Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            ++   +P DD   Y LL +  T G+FQLES GM+  L  ++PD  ++IIA+++L+RPGP
Sbjct: 600 DINFHKLPIDDQNVYRLLQSGKTTGVFQLESKGMQDLLVRLKPDKFDEIIAILALFRPGP 659

Query: 655 IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           + + +V  + +RK+G++ +      +  +L+ET G+ +  + ++ +           AD 
Sbjct: 660 LMSGMVDDFIDRKHGRKPVEYPFEEVKEILEETYGLCLTGDTLITM-----------ADG 708

Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            R+ + K+I E     +E      S NG+ K    + F+
Sbjct: 709 SRKTI-KEIVENDLIDEEILTLDLSDNGLKKGKITHCFD 746



 Score =  349 bits (895), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 123/353 (34%), Positives = 191/353 (54%), Gaps = 5/353 (1%)

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
                   IYQEQ+M +A +LSG++++EAD LR+A+GKK  + M K K+RFISGA + G  
Sbjct: 1099 NIISHNCIYQEQIMFMANILSGFTMAEADTLRKAIGKKKADVMAKMKDRFISGAVERGFD 1158

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
            K     +++ + KFA Y FNKSH+ AYA ++Y TA++KT+YP EF A  +++E +N  K 
Sbjct: 1159 KVKIEKLWDDIEKFASYSFNKSHSTAYAYLTYWTAYIKTYYPEEFFAVKLSIE-NNDNKF 1217

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASA-DK 860
                 D   F I+++PP +N    +F + D  +I + L+ IK VG  +A+ I+E    + 
Sbjct: 1218 LNLLLDMEDFGIKLLPPDINRSRSNFSIEDKGKIRFGLSRIKNVGEQSAKLIVEERERNG 1277

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             +  + D   R+DSK LN+RVLE+L+ AGA D  G  R  +L S+D      Q   + + 
Sbjct: 1278 DYKDIFDIAERMDSKALNKRVLEALIKAGAFDFSGVDRGVMLASVDRALSAGQKAREKKA 1337

Query: 921  NKHENIFAHEKGTFSDK-ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            +   ++F              E     +   +   E+ VLGFY SGHPL+ YK  L+   
Sbjct: 1338 SGQNSLFGLMPQIEDGNGFAYENAEPISEKEKLNFEKEVLGFYISGHPLNAYKKELQGYV 1397

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            IK          G+ +R+A ++   ++KKTR GS +  +T  +     +   F
Sbjct: 1398 IK-INSLAERKTGDKVRIAGVISDIKKKKTRSGSTMAILTVQDETGILDVRVF 1449


>gi|116695007|ref|YP_840583.1| error-prone DNA polymerase [Ralstonia eutropha H16]
 gi|113529506|emb|CAJ95853.1| DNA polymerase III alpha subunit [Ralstonia eutropha H16]
          Length = 1136

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/1104 (22%), Positives = 452/1104 (40%), Gaps = 118/1104 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK------- 61
            P +V L   S+++ L GA     ++++        +A+TD  ++                
Sbjct: 18   PDYVELHCISNFTFLTGASHPGELIERAFGLGYSGLALTDECSVAGTARAHDAIETLRKR 77

Query: 62   -----ACAAGI---------------------QPIIGCQLDIDMQ--------------D 81
                 A +A                        P         +Q               
Sbjct: 78   LHDAVARSAARGEEGVDEPLLDHDEEPDAGADDPHAHASRHQRLQALARAADAFSLLIGS 137

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
               +T    +  P +  +VL+    EG+  L EL++      Q K S R+    L     
Sbjct: 138  RFSLTPADGSARPPL-RLVLIAQHREGFGNLSELITLGRRRAQ-KGSYRLHPEDLAAPAA 195

Query: 142  E--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-DRYRES 198
            +   L  + G  +  +         ++  ++    + +FG+R ++ L++ +G+ D    +
Sbjct: 196  DEAHLRGVPGCVALLLPDYCA--DPELLREQAEWCRAVFGERAWIALEQLQGHADALHRA 253

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNR 257
            ++  ++    +PL A               DVL A+     +++         + +L+ R
Sbjct: 254  RLEAVSAQTGVPLAAAGAVTMHVRSRKPLSDVLAAIRLGQPLAECGMALAPNAEQHLRMR 313

Query: 258  SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
              +  ++    EAL  T++IA  C F L +     P  +    +       + LR +   
Sbjct: 314  QVLSRLYPR--EALAQTLKIAESCDFSLGMLRYEYPEELVPAGE----TPISYLRKEVTR 367

Query: 318  GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
            G   R   G   +     +   +L           +  +FL V D +++A+   I +  G
Sbjct: 368  GKRERFPNGLKPEWEKQLEEELQLI------EEKHYEPFFLTVHDIVRFARGEGI-LCQG 420

Query: 378  RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
            RGS A S+  + L +T++ P + +LLF RFL+ +R   PD D+DF   RR+EVI+Y+  K
Sbjct: 421  RGSAANSLVCFCLYVTEVSPEQANLLFGRFLSRERDEPPDIDVDFEHQRREEVIQYIYRK 480

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            YG  R A   +  + ++++ALRDVGRAL +  S V+++ K           ++ IA    
Sbjct: 481  YGRHRAALAASLITYRSRSALRDVGRALGIDASVVEQVVKGQAWWDGGRGFVEKIAR--- 537

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
                    P+V +   ++ +L G  RH S H  G VI    LS+LVP+     +D  V Q
Sbjct: 538  -YGLDPESPAVQQWASLTAQLRGFPRHLSQHVGGFVIAQHKLSRLVPIENAAMADRSVIQ 596

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETYHLL 612
            ++   +E  GL+K D L L  L+ ++++L+ +     A+  +   +  IP +D +TY+++
Sbjct: 597  WDKDDLESLGLLKVDVLALGMLSAIRRALEMIPNPDPARAALPTRMEDIPKEDPDTYNMI 656

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGK-- 668
                T+G+FQ+ES   +  L  +QP    D++  V++ RPGPI   +   Y  R+     
Sbjct: 657  CKAETIGVFQIESRAQQSMLPRLQPRQYYDLVVEVAIVRPGPIQGGMVHPYLKRREAFRR 716

Query: 669  --EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEM 725
              +     +P+I+ +L  T GV I+QEQVMQ+A   +G+S  +AD LRR+M   + + ++
Sbjct: 717  TGKPPTYFNPVIEKVLGRTLGVPIFQEQVMQLAIDAAGFSPGQADQLRRSMAAWRRRGDL 776

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             + ++  +   + NG  ++ A+ I + +  F +YGF +SHAA++A + Y +AW+K H+P 
Sbjct: 777  RQHQDALVRALTGNGYPESFALAICKQIEGFGEYGFPESHAASFAKLVYISAWLKCHHPA 836

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-------------- 831
             FL A +  +        +  QDA +  +Q++P  V     D  +               
Sbjct: 837  AFLCALLNSQPMGFYSPSQLVQDASRNGVQVLPVDVTISRWDSTLEPVEADVADAQARTR 896

Query: 832  --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                R+   L  +KG+    A  I  A A +PFDS+ED   R    + +  VL +     
Sbjct: 897  PQHPRVRLGLGRVKGMREAAALRIEAARAQRPFDSVEDLALRASLDRHDIDVLAAADALA 956

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
             L              +  Q   Q         H ++                       
Sbjct: 957  PLAG------------NRRQARWQARAAAAHAAHRDLL----YEAPPAEAALALPEPRLG 1000

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 +   LG     HPL + +  L  M      +      G  +R   +V  +Q+  T
Sbjct: 1001 EDVTADYASLGLSLKSHPLALLRRKLTAMRFATASQLARCANGRRVRACGIVTVRQRPST 1060

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
              G+   + T  +         +P
Sbjct: 1061 ASGT--IFATIEDETGSVNLILWP 1082


>gi|307069536|ref|YP_003878013.1| putative DNA polymerase III subunit alpha [Candidatus Zinderia
           insecticola CARI]
 gi|306482796|gb|ADM89667.1| putative DNA polymerase III, alpha subunit [Candidatus Zinderia
           insecticola CARI]
          Length = 1131

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/904 (36%), Positives = 533/904 (58%), Gaps = 34/904 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL++H+ YS+++  + +N I+     D+Q ++AITD +N+F A++F +++   GI+PI
Sbjct: 4   FTHLRLHTEYSIVDSLVKINEIIKLAKKDKQESLAITDLSNIFGAIKFYKESIKNGIKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IGC L I+ + N K              +++L     GY +L +L+S+ ++ +   +  +
Sbjct: 64  IGCDLFIENKINKKK----------PFRLLILSKNYNGYLQLCKLISKSWIYNLKDEKPQ 113

Query: 131 ICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           I  SWL++I     LI L+G  S  +         + AE     +KK+F +  ++ +Q  
Sbjct: 114 IKKSWLKKINKNSNLIALSGYKSSDLLFYINKKKFKKAENCAKKWKKIFNNLYFIEIQNI 173

Query: 190 RG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +      ++++     +P+VAT+   F  ++++ AH++   +     ++   +   
Sbjct: 174 NIKNNEIFNYNLIKIGNKLNIPIVATHPIQFCYKKEFIAHEIRYNIYKKKKLNN-SKYHF 232

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             +   K + E+  +F +   A++N+ +I++ C+ I+    P     + K     +  + 
Sbjct: 233 NKEQNFKTQIEINKLFVNNLIAVKNSYKISKMCNLII----PKGVLKLPKYNKKKKINDN 288

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             L+ K   G         +    + + Y++RL FEL +I++  FS YFL+V DFI+WAK
Sbjct: 289 ELLKIKTKIG-----LNKRLKNKKNLKIYKKRLKFELKIISKTNFSNYFLMVNDFIKWAK 343

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
           K NI +GPGRGSGA S+ AY L ITDIDP+++ L+FERFLNP+R+S PDFDIDFCQ +RD
Sbjct: 344 KKNINIGPGRGSGASSLIAYCLFITDIDPIKYKLIFERFLNPERISFPDFDIDFCQKKRD 403

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +I+Y++ KYG   V+QIITFG + AK+++RDVGR L + Y+  + + KLI N   + ++
Sbjct: 404 IIIKYIKKKYGVNNVSQIITFGKIAAKSSIRDVGRVLGLSYNFCNNIVKLISNKKYYNLN 463

Query: 489 LQAIADDSRF-REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
           L+ I +++ F ++  L +  + +L+  S ++EG+ ++   HA GI+I    L++   +Y+
Sbjct: 464 LKEIVENNYFLKKKILNNKIIKKLIFFSIQIEGIIKNIGIHAGGILISKNNLNKYCALYK 523

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP---FD 604
             + ++   Q + + +E  GLIKFDFLGL TLT++ ++   + +   K+ L       F 
Sbjct: 524 HSKDNIITIQNDKEDLEFLGLIKFDFLGLATLTIIDETNKNIKKINPKIKLISWNKISFK 583

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D +TY LL    T+G+FQLES G++  L+    +C+EDI A++SLYRPGPI  I  +  R
Sbjct: 584 DKKTYKLLNNANTIGVFQLESIGIQNILKKANINCLEDITAIISLYRPGPIKLIKKFYKR 643

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           KNG  K    +  I  +L ET G++IYQEQVM++A++++ YS+  AD+LRR + KK  +E
Sbjct: 644 KNGY-KFKFFNEKIKNVLSETYGIMIYQEQVMEVAKIIANYSMGSADLLRRIISKKNLKE 702

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M K ++ FI GA KN I+   A  IF L+ KFA YGFNKSHA AYAVISY TA++K+++P
Sbjct: 703 MHKNRKLFIKGALKNKINLKTANKIFNLMEKFAGYGFNKSHATAYAVISYYTAYLKSNFP 762

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVDF----KVGDNRIYYSL 839
            EF++A+++L ++N+ KIK   +DA   F I I+PP++N     F    K     I Y L
Sbjct: 763 NEFISANLSLSINNINKIKFLIKDAINNFKINILPPNINYSKYKFIPIIKNNIFYIRYGL 822

Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL--NRRVLESLVFAGALDCFGYS 897
           +AIKG+G    + I+     K F +L DF  R+   K   N+RVL SL+++G+LD F  +
Sbjct: 823 SAIKGLGKIAIKLILNKRKKKIFKNLYDFIFRIIKNKNLINKRVLNSLIYSGSLDIFNKN 882

Query: 898 RMQL 901
           R  L
Sbjct: 883 RNIL 886


>gi|153834883|ref|ZP_01987550.1| putative DNA polymerase III, alpha subunit [Vibrio harveyi HY01]
 gi|148868701|gb|EDL67780.1| putative DNA polymerase III, alpha subunit [Vibrio harveyi HY01]
          Length = 1024

 Score =  710 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/1040 (24%), Positives = 447/1040 (42%), Gaps = 89/1040 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--KACAAGI 67
            S+  L   S++S L GA     ++ + A  +  AIAITD  ++   ++     +     I
Sbjct: 2    SYAELFCQSNFSFLTGASHAEELVLQAAFYRYQAIAITDECSVAGVVKAHATIEQHKLDI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G    ++ +                  +VLL    + Y  L  +++      +   
Sbjct: 62   KQIVGSMFWLNDE----------------CQVVLLCPCRKAYAELCRIITNARRRSE--- 102

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                 LS    +      +L           +     +         ++    RL+V +Q
Sbjct: 103  KGSYQLSEWDLMSVRHCFVL-----------WLPTHQESDHYWGRWLQQHHAHRLWVAIQ 151

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH  G D    +    LA   +LP+ A    L  + E      VL AV H   V +    
Sbjct: 152  RHLGGDDDAYTTHCELLANEFQLPITACGGVLMHAVERLPLQHVLTAVKHGCSVDKLGFG 211

Query: 247  RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R++  +  L+  +++  I+    E LE +  IA  C F L       P  +         
Sbjct: 212  RLSNAERALRPLNKLSRIYK--SEWLEESTHIADLCEFKLSDLKYEYPTELIPNG----Y 265

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     G ++R  +G  A      D  Q ++ EL +I  +++  YFL + D + 
Sbjct: 266  TPTSYLRMLVERGKKLRFPEGIPA------DIHQTIENELALIEELEYHYYFLTIHDIVM 319

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK+  I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +
Sbjct: 320  FAKQQGILY-QGRGSAANSVVCYCLEITAVDPRQISVLFERFISREREEPPDIDVDFEHE 378

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG ER A   T  S + K+A+R+VG+AL +  +Q+D   K + N    
Sbjct: 379  RREEVIQYIYKKYGRERAALAATVISYRFKSAVREVGKALGIEETQLDFFIKNV-NRRDR 437

Query: 486  PVSLQAIADDSRFREARLADPSVD--RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                QA     +  E  L   S+   + +++  ++ G  RH S H  G VI   PL +LV
Sbjct: 438  SQGWQA-----QIIELGLQPESLKGQQFIQLVNEIIGFPRHLSQHVGGFVISSGPLYELV 492

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA---QRGVKVDLSL 600
            P+      D  + Q++   +E   L+K D L L  L  ++K    +    QR + +    
Sbjct: 493  PVENASMEDRTIIQWDKDDLESLKLLKVDVLALGMLNAIRKCFQLVEKHHQRSLSIAEIT 552

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
               DD   Y ++    T+G+FQ+ES      L  ++P    D++  +++ RPGPI  D +
Sbjct: 553  RLQDDPHVYRMIQKADTVGVFQIESRAQMSMLPRLKPARYYDLVVQIAIVRPGPIQGDMV 612

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  R+NG+E I      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM 
Sbjct: 613  HPFLKRRNGEEPISYPSEEVKSVLERTMGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMA 672

Query: 719  K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K   ++ K K + I G  + G     A  IF+ +  F +YGF +SH+A++AV++Y +A
Sbjct: 673  AWKKNGDLAKFKPKLIDGMRERGYDLEFAERIFDQICGFGEYGFPESHSASFAVLAYCSA 732

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GD 832
            W+K +YP EF  A +  +        +  QDAR+  ++++P  +N       +     G 
Sbjct: 733  WLKFYYPAEFYTALLNSQPMGFYSPSQLIQDARRHGVEVLPVCINHSSYQHHLVQRPNGR 792

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              +      +KG    +A  ++E      + ++++    V     NRR +E L  A    
Sbjct: 793  LGVQLGFRLVKGFNQESASRLVERRPSTGYRAIQE----VKQILRNRRDIELLASANTFQ 848

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                +R             A+W   +  +    +F H +   ++          +     
Sbjct: 849  ILSGNRY-----------NARWAAMDSLSD-LPLFNHIEEPMANYQAQP-----SEYENL 891

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +    G   S HP+ + +   +       ++ V     + + +  +V  +Q   T  G
Sbjct: 892  IEDYASTGLSLSRHPITLLEEAGKLPRFTRMKQLVEKEHKSLVTVVGVVTGRQSPGTAAG 951

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
              + + T  +         +
Sbjct: 952  --VTFFTLEDDTGNINVVVW 969


>gi|92118176|ref|YP_577905.1| error-prone DNA polymerase [Nitrobacter hamburgensis X14]
 gi|91801070|gb|ABE63445.1| error-prone DNA polymerase, DnaE-like protein [Nitrobacter
            hamburgensis X14]
          Length = 1164

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/1103 (22%), Positives = 437/1103 (39%), Gaps = 120/1103 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PS+  + + +++S L GA      + + +  + P I I D N L   +    +       
Sbjct: 8    PSYAEIGIATNFSFLHGASHPQEYVHQASELRLPIIGIADRNTLAGVVRAYAE------- 60

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
                   + +++   ++    +  F    P I++     + Y RL  L++R     + K 
Sbjct: 61   -----LGNPELRSKPRLLIGSRLVFIDGTPDILVYPRDRDAYGRLCRLLTRGKRAAE-KG 114

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               + L  L E     L++LT               +  A K L   ++     +++   
Sbjct: 115  ECHLGLDDLLEFSEGQLLVLTLPHRF---------DTTTALKVLDRLRQSRAAGVWLAAS 165

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
              +RG DR R  ++ ++A    +PL+ATN  L+         DVL  +     V    R 
Sbjct: 166  LLYRGDDRRRLLRLRRIATAARVPLLATNEVLYHHPARRPLQDVLTCIREKATVHAIGRK 225

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + YLK   EM  +F D+PEA+  TV +A R +F L       P           K
Sbjct: 226  LEANAERYLKPTDEMARLFRDIPEAIAETVTLASRIAFTLDQLKYQYPDEPVPPG----K 281

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L +   AG           K       R+ L  EL +I ++ ++ YFL V D + 
Sbjct: 282  TAQRRLEDLTWAGAHKYFPVRIPPKT------RKVLHKELRLIRQLNYAHYFLTVHDIVH 335

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WA+  NI +  GRGS A S   Y L IT ++P    LLFERF++ +R+  PD D+DF   
Sbjct: 336  WARSRNI-LCQGRGSAANSAVCYVLGITAVNPAETDLLFERFISKERLEPPDIDVDFEHS 394

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV++YV  +YG  R A I T    + ++A+RDVG+AL +       L   +      
Sbjct: 395  RREEVMQYVYRRYGRHRAAIIATVIHYRPRSAIRDVGKALGLTEDVTAALADTVWGSWGD 454

Query: 486  PVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             VS      D + R+A     +P + R + ++ +L G  RH S H  G V+    L   V
Sbjct: 455  GVS------DMQVRQAGFDPRNPMLRRAVALATELIGFPRHLSQHVGGYVLTQDRLDTYV 508

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+      D    +++   ++   ++K D L L  LT ++K  D +A+    + +L+ +P
Sbjct: 509  PIGNAAMDDRTFIEWDKDDVDALRMMKVDVLALGMLTCIRKCFDLIARHKGKRWELATVP 568

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             +  E Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +  
Sbjct: 569  REQREVYDMLCKGESLGVFQVESRAQMNMLPRLKPRTFYDLVIEVAIVRPGPIQGDMVHP 628

Query: 661  YNNRK-NGKEKIVSIHP------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            Y  R+    E I   +P       +  +L +T GV ++QEQ M+IA   + ++  EA+ L
Sbjct: 629  YLKRRAMKPEDIDYPYPKGGDRNELRNVLHKTLGVPLFQEQAMRIAIEAAKFTSQEANGL 688

Query: 714  RRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM   +    +   +E+ ++     G     A N FE +  F  YGF +SHAA++A +
Sbjct: 689  RRAMATFRNVGTIGTFQEKMVNSMIARGYDPVFAKNCFEQIKGFGSYGFPESHAASFAQL 748

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG- 831
             Y ++W+K  +P  F    +  +        +   DAR+  + + P  V+       +  
Sbjct: 749  VYVSSWLKRFHPDAFCCGLLNSQPMGFYAPAQIVGDARKNGVAVRPIDVSFSYSQNTLEE 808

Query: 832  ----DNRIYYSLAAIKG----------VGTTTARHIMEA---SADKPFDSLE-------- 866
                   +      I G          +    A+H+  A       P   +         
Sbjct: 809  RAGRHYAMRLGFRQIDGFKWVDKDEAKLKQDQAKHLSSASSPRTRGPITPVLNEFSTHVS 868

Query: 867  -----------------------------DFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
                                         D+  R+      RR   S+            
Sbjct: 869  GHSERLALSQAERSKGPHVRGDDETLCAGDWGERI-VAARQRRPFTSIEDFARDTKLPKR 927

Query: 898  RMQLLQSLDNIQ------KYAQWVEKNRTNK-HENIFAHEKGTFSDKITLEKFSVENSSV 950
             + LL   D  +      + A W  +   +     +F                       
Sbjct: 928  ALILLADADAFRSLGLDRRAALWAVRRLPDDVPLPLFESAIARELPDERAAPLPQMPLPE 987

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            +   + + +     GHP++  + +L +  +    E         +R A +V+ +Q+  + 
Sbjct: 988  QVVADYQTVRLSLKGHPMEFLRTMLTRERVVSCAEVCHANDKRRVRCAGVVLVRQRPGSA 1047

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
            KG  + ++T  +         +P
Sbjct: 1048 KG--VVFMTLEDETGIANIVVWP 1068


>gi|254507615|ref|ZP_05119748.1| putative DNA polymerase III alpha subunit subfamily [Vibrio
            parahaemolyticus 16]
 gi|219549502|gb|EED26494.1| putative DNA polymerase III alpha subunit subfamily [Vibrio
            parahaemolyticus 16]
          Length = 1023

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/1034 (24%), Positives = 439/1034 (42%), Gaps = 80/1034 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   +++S L GA     ++ +    +  ++AITD  ++   +   +      +   
Sbjct: 3    YAELFCQTNFSFLTGASHAEELILQADFLRYHSLAITDECSVAGVVRAYKAIETHQLNTR 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +       +                   +VLL  T + Y  L  +++      + K   +
Sbjct: 63   LIIGSMFWLN--------------QECQVVLLCPTHDAYAELCRIITNARRRSE-KGQYQ 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    L  +    +I L                     K      +    RL++ +QRH 
Sbjct: 108  LSEWDLMTVKHCLVIWLPSHQDSDF-------------KWGQWLTQHHQHRLWIGIQRHL 154

Query: 191  GYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRV 248
              D         +LA    LP+ A    L  +        VL A+     V         
Sbjct: 155  SSDEKQYLQHCERLAQELALPITACGGVLMHTATRLPLQHVLTAIQLGKSVDNIGSHLLT 214

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +  L+++ ++  +F   PE LE +V IA+RC F +       P  +    +       
Sbjct: 215  NTERTLRSKEKLSKLFK--PEWLEESVHIAKRCKFSMGELQYQYPSELVPNGE----SPN 268

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR     G ++R  +G  A         + +D EL++I  + +  YFL + D + +AK
Sbjct: 269  SYLRKLVEHGKKLRFPEGVPAH------VEETIDKELDLIEELNYPFYFLTINDIVMFAK 322

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +RR+
Sbjct: 323  RNRILY-QGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERNEPPDIDVDFEHERRE 381

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  KYG ER A   T  + + K+A+RDVG+AL +  SQ+D   K + N     + 
Sbjct: 382  EVIQYIYQKYGRERAALAATVITYRFKSAVRDVGKALGIEESQLDYFIKNV-NRRDRSLG 440

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             QA   +   +   L      + + +  ++ G  RH S H  G VI   PL QLVP+   
Sbjct: 441  WQAQIVELGLQPGSLKGE---QFIALVNEIMGFPRHLSQHVGGFVIAAGPLHQLVPVENA 497

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS--LIPFDD 605
               D  V Q++   +E   L+K D L L  L+ ++K  D++ +    ++ ++      DD
Sbjct: 498  SMPDRTVIQWDKDDLESLKLLKVDVLSLGMLSAIRKCFDWVKKLHNQELSIAEITRRQDD 557

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
               Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI  D +  +  
Sbjct: 558  PNVYRMIQQADTVGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGPIQGDMVHPFLK 617

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R++G E I      ++ +L  T GV I+QEQV+++A + +G+S  EAD LRRAM   K  
Sbjct: 618  RRDGIEPITYPSKEVEEVLSRTMGVPIFQEQVIKLAMVAAGFSGGEADSLRRAMAAWKKN 677

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             ++ K K + I G    G     A  IF+ +  F +YGF +SH+A++AV++Y +AW+K +
Sbjct: 678  GDLIKFKTKLIEGMLSRGYELEFAERIFDQILGFGEYGFPESHSASFAVLAYCSAWLKHY 737

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIYYS 838
            YP  F  + +           +  QDA++ N+ I+P  VN    D +V        I   
Sbjct: 738  YPEAFYTSILNSLPMGFYSASQLVQDAKRHNVMILPVCVNQSLHDHQVVKCGDKFAIRLG 797

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L  IKG    ++  +++A   + F    +  +++    LNRR +E L  A A+     +R
Sbjct: 798  LRQIKGFSIESSHQLIKARGKQGF----NHPNQLKHIGLNRRDIELLASANAMQSIANNR 853

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             Q   S+ +                  +F   + T S  +        +       +   
Sbjct: 854  YQTRWSMMDSLSD------------LPLFKDIQETDSMPVAAP-----SEIQTLLEDYAA 896

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             G     HP+ +              E +     + + +  +V  KQ   T  G  + + 
Sbjct: 897  TGLSLQQHPIRLLDKAGMLGRFTRMSELMTRPHQSLVTVVGVVTGKQAPGTAAG--VTFF 954

Query: 1019 TFSEPAKEYEANFF 1032
            T  +         +
Sbjct: 955  TLEDDTGNINVVVW 968


>gi|329116894|ref|ZP_08245611.1| DNA polymerase III, alpha subunit [Streptococcus parauberis NCFD
            2020]
 gi|326907299|gb|EGE54213.1| DNA polymerase III, alpha subunit [Streptococcus parauberis NCFD
            2020]
          Length = 1034

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/1028 (28%), Positives = 497/1028 (48%), Gaps = 108/1028 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L +   +        I I D +NL++A  F       G+QPI
Sbjct: 2    FAQLDTKTVYSFMDSLVDLEHYFTEAKKLGYKTIGIMDKDNLYAAYHFITGCQKHGLQPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++D   QDNL              ++ L+    +GY+ L++ +S   +  +  Q   
Sbjct: 62   LGLEIDYPSQDNLM-------------TLFLIAQNNQGYKNLLK-ISTSKMSGEFNQ--- 104

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L   ++    GL+ +    +          + Q  +  L T+  ++ D          
Sbjct: 105  IDLEHFKD----GLVAIIPDQA----------NLQAIDLPLKTYFGVYPD---------- 140

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                         +   + PL+A     + S+ D E+   L A+  +  +++     V  
Sbjct: 141  -----------TRSNPTDNPLIALRKVRYFSDNDRESLQTLHAIRDNVNLTET--SLVEQ 187

Query: 251  DHYLKNRSEMVSIFS-DLPEALENTVEIARRC--SFILQVHAPILPRFIEKECDDIQKEE 307
              +L +   +   F    P+AL+N   +       F  Q+  P   R I           
Sbjct: 188  GQFLDSVETVTDFFKVQFPDALKNLENLTSTISYHFDSQLKLPRFNREIP---------A 238

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +++LR     GL+         K     DY+ RL+ EL +I+ M F  YFLIV D +++ 
Sbjct: 239  KDQLRQLTEEGLKK--------KNLWLPDYQVRLEKELQIISEMGFDDYFLIVWDLLRFG 290

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     +G GRGS AGS+ AY+L IT IDP++  LLFERFLN +R SMPD DID     R
Sbjct: 291  RSKGYYMGMGRGSAAGSLVAYSLEITGIDPIKNDLLFERFLNKERYSMPDIDIDLPDIYR 350

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E + YV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I        
Sbjct: 351  SEFLHYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELSHLTKKIGF---KDT 407

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                   +  FR+   +     R  EI++++EG  R  S HAAGIV+ D  L+  +P+  
Sbjct: 408  LDSVYEKNISFRQFVNSRLEYQRAFEIAKRIEGNPRQTSIHAAGIVMSDDNLTDHIPL-- 465

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDH 606
             +  D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + L   +G+ + ++ I  +D 
Sbjct: 466  KLGDDMMITQYDAVAVEANGLLKMDFLGLRNLTFVQKMKEKLFKDQGIDISIADINLEDS 525

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+N
Sbjct: 526  DTLALFARGDTKGIFQFEQNGAISLLKRIKPVRFEEIVATTSLNRPGASDYTNNFIKRRN 585

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E +  I P+I P+L+ T G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK   EM 
Sbjct: 586  GQEVVDLIDPVIAPILESTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKNSAEMK 645

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +  F++GA++ G S   A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 646  KLESEFLAGAAQLGRSLETAKLLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPGI 705

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F    M     +      +  DA   + +++P S+N      KV  N I   +  IKG+ 
Sbjct: 706  FFDVIMNYSNSD------YISDALDSDFKVIPLSINNIPYTDKVEKNTILMGMKNIKGLP 759

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I+E   ++PF  +E F +R+  K   +  L  L+  G  D F  +R +++++ +
Sbjct: 760  RDFAYWIIE---NRPFSGIESFMTRIPEKYKKKEALIPLIQIGLFDQFEPNRKKVIENCE 816

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             +  +         N+  ++FA    ++ D          ++S +++ EQ ++G   S H
Sbjct: 817  ALLVFV--------NELGSLFADSSFSWVDA------DDYSNSEKYQLEQEIIGVGLSKH 862

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAK 1025
            PL       RK     +      ++  +  +   + S +  +T+  G ++ +++ ++  K
Sbjct: 863  PLLALAEKTRKQ----FTPITKLVKDTDAEILVQIDSIRIIRTKSNGQQMAFLSVTDTKK 918

Query: 1026 EYEANFFP 1033
            +++   FP
Sbjct: 919  KFDVTIFP 926


>gi|126730885|ref|ZP_01746694.1| DNA polymerase III, alpha subunit [Sagittula stellata E-37]
 gi|126708601|gb|EBA07658.1| DNA polymerase III, alpha subunit [Sagittula stellata E-37]
          Length = 1041

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/1020 (25%), Positives = 425/1020 (41%), Gaps = 88/1020 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP- 69
           F  L + S++S L GA      +++ A      IAI D N++   +    +A     Q  
Sbjct: 2   FAELCITSNFSFLTGASHPEEYVERAAFLGIETIAICDENSVAGIVRAHSEAKEIAYQIR 61

Query: 70  ----IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS--------------TAEGYQR 111
               II     I       +    + P  TVP ++                  +   +  
Sbjct: 62  EREEIIARDGLIGPPMPPGLPAPPRAPVDTVPRVIPGARLVFREGLQMTVLATSRRSWAD 121

Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
           L  ++S       GK S  I L+ L E    G   +      P            AE+  
Sbjct: 122 LCRIISLGRRR-AGKGSCDISLADLPE-DMGGWEAILHPPRVPTAPGGAGGWLSRAEQVS 179

Query: 172 LTFKK-----------------------LFGDRLYVNLQR-HRGYDRYRESQVVQLAYTH 207
             F +                       L   RL++ L   + G D  R   + +LA   
Sbjct: 180 RRFARTSAVPSDGMDANGAPGVPPDRDALSPGRLHLALAPRYDGQDARRFDALARLAERL 239

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD 266
            +  VAT   +          DVL A+     V +  R  +   +  L++  EM  +   
Sbjct: 240 GIDTVATAQPMMHHGRRRRLADVLTAIRTRQRVDKLGRHALANAEQRLRSGDEMRRLLGP 299

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
              A+    E+ARRC+F +       P  I        +     L   A  GL  R  QG
Sbjct: 300 HAAAVTRAGELARRCTFDIASLRYEYPSEITG-----TETATQRLSRLAHEGLAWRYPQG 354

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
           A  K       R +LD EL +IA++K+  YFL V D + +A++  I +  GRGS A S+T
Sbjct: 355 APDKA------RAQLDHELALIAKLKYEPYFLTVRDIVAFARERGI-LCQGRGSAANSIT 407

Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            Y L +T + P   +++FERF++  R   PD D+DF  +RR+EVI+++  +YG  R    
Sbjct: 408 CYCLGVTSVSPEIGTMVFERFVSEARDEPPDIDVDFEHERREEVIQHIYERYGRHRAGIC 467

Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL--A 504
            T    + K A+R+VGRA+ +    +  L   +    +         ++ R RE  L   
Sbjct: 468 ATVIHYRGKRAIREVGRAMGLSEDTLGALSSQLWGFFSTSG-----MEEQRMREIGLDPT 522

Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
           D  +   +E+  ++ G  RH S H  G ++ +  L +LVP+         V  ++   I+
Sbjct: 523 DRRLQLTMELIHEIIGFPRHLSQHVGGFIVTEGRLDELVPIENASMEGRTVICWDKDDID 582

Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
             G++K D L L  LT ++K+ D L    G    L+ +P +D E Y +L    +LG+FQ+
Sbjct: 583 ALGILKIDVLSLGMLTCIRKAFDLLKLHHGTTHTLATLPPEDPEVYDMLCRADSLGVFQV 642

Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM 681
           ES      L  M+P    D++  V++ RPGPI  D +  Y  R+NG+E++      +  +
Sbjct: 643 ESRAQMNFLPRMRPRNFYDLVIEVAIIRPGPIQGDMVHPYIRRRNGEERVSFPSDALGEV 702

Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNG 740
           L +T GV ++QEQ MQIA   + ++ +EAD LRR++   K    + + + RF+ G   NG
Sbjct: 703 LGKTLGVPLFQEQAMQIAITGANFTPTEADRLRRSLATFKKHGSVSEFRTRFMKGMRDNG 762

Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             +  A   F  +  F  YGF +SHAA++A++ Y +AW+K H+P  F  A +  +     
Sbjct: 763 YDEAFADRCFSQIEGFGSYGFPESHAASFALLVYASAWLKCHHPAVFACALLNSQPMGFY 822

Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIME 855
              +  +DAR+  + + P  +N    D  +  +      +      IKG+    A+ I  
Sbjct: 823 APAQIVRDAREHGVAVRPIDINASYWDNALEPDGRGGLALRLGFRQIKGLSEDDAQWIAC 882

Query: 856 ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
           A  +  + ++ D   R     L+ ++L  L  A A    G +R + L     + +     
Sbjct: 883 ARGNG-YRTVRDVWRRA---GLSPKMLGRLSEADAFASIGLNRREALWEAKALTR----- 933

Query: 916 EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
                     +FA +    + +  +              +   +      HP+ + + IL
Sbjct: 934 -----GPDLPLFARDIEGEAIREVMADLPRMTEGEEVVEDYVAMRLSLRAHPVALLRHIL 988


>gi|22537100|ref|NP_687951.1| DNA polymerase III DnaE [Streptococcus agalactiae 2603V/R]
 gi|25010983|ref|NP_735378.1| DNA polymerase III DnaE [Streptococcus agalactiae NEM316]
 gi|76788136|ref|YP_329656.1| DNA polymerase III DnaE [Streptococcus agalactiae A909]
 gi|77406846|ref|ZP_00783875.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae H36B]
 gi|77411007|ref|ZP_00787362.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae CJB111]
 gi|77413238|ref|ZP_00789435.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae 515]
 gi|22533960|gb|AAM99823.1|AE014234_13 DNA polymerase III, alpha subunit [Streptococcus agalactiae 2603V/R]
 gi|23095383|emb|CAD46588.1| DNA polymerase III (alpha subunit) [Streptococcus agalactiae NEM316]
 gi|76563193|gb|ABA45777.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae A909]
 gi|77160698|gb|EAO71812.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae 515]
 gi|77162931|gb|EAO73887.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae CJB111]
 gi|77174540|gb|EAO77380.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae H36B]
          Length = 1034

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1028 (29%), Positives = 485/1028 (47%), Gaps = 108/1028 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   + K  +     I I D +NL++A  F Q+A  A ++PI
Sbjct: 2    FAQLDTRTVYSFMDSLVDLKTYVSKSKSLGYQTIGILDHSNLYAAYHFIQEAQKANLRPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G   DI +++                 +  +     GY+ L++L +            +
Sbjct: 62   VGFSFDIVVENR-------------SIEVYCIAINTVGYKNLLKLSTAQMSE-------K 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L+ L E   EG+                        + +L ++ +         Q + 
Sbjct: 102  MSLNLLTE-HLEGV------------------------QLILPYQDVLD-------QLNL 129

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             +D      +      +  P++A +   +  + D E   +L A+  + ++  KD    + 
Sbjct: 130  PFDYVIGVNLTSPQIPYTKPIIAIDTVRYFQKNDIETLQMLHAIRDNVLL--KDAQYASK 187

Query: 251  DHYLKNRSEMVSIF-SDLPEALENTVEIARRCS--FILQVHAPILPRFIEKECDDIQKEE 307
            +  LK   EM   F    PEAL N   +    +  F      PI  R I           
Sbjct: 188  NQELKPCQEMTLAFKERFPEALANLESLVENVAYHFDSDFKLPIFNREIP---------A 238

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              ELR      L+        +KG  +  Y++RL+ EL +I +M F  YFLIV D +++ 
Sbjct: 239  GEELRTLTQNNLK--------SKGLWSDAYQERLEKELTIIHKMGFDDYFLIVWDLLRFG 290

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     +G GRGS AGS+ +YAL IT IDP++ +L+FERFLN +R SMPD DID     R
Sbjct: 291  RSKGYYMGMGRGSAAGSLVSYALNITGIDPVKHNLIFERFLNEERYSMPDIDIDLPDIYR 350

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E +RYV+N+YG    AQI+TF +  AK A+RDV +       ++  + K I        
Sbjct: 351  GEFLRYVRNRYGSMHSAQIVTFSTFGAKQAIRDVFKRFGASEYELTNITKKIHFRDNLT- 409

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                   +  FR+   +     +  +I++++EG  R  S HAAG+V+ D  L+  +P+  
Sbjct: 410  --SVYNRNLAFRQIIDSKIEYQKAYDIAKRIEGNPRQTSIHAAGVVMSDDLLTDHIPLKN 467

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + + +   + + L  I  +D 
Sbjct: 468  --GEDMMITQYDASSVEDNGLLKMDFLGLRNLTFVQKMKEKVDKDYGISIQLETIDLEDK 525

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ET  L     T GIFQ E SG    L  ++P+C ED++A  SL RPG  D    + NR+ 
Sbjct: 526  ETLKLFAAGQTKGIFQFEQSGAINLLRRIRPECFEDVVATTSLNRPGASDYTENFINRRF 585

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GKEKI  + P+I P+L+ T G+++YQEQVMQIAQ  +G++L ++D+LRRAM KK  +EM 
Sbjct: 586  GKEKIDLVDPVIAPILQPTYGIMLYQEQVMQIAQTYAGFTLGKSDLLRRAMSKKNSKEMQ 645

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K  + F+ GA   G  +  A  IFE +AKFA YGFN+SHA AY+ +++Q A+ K HY   
Sbjct: 646  KMSQSFLEGAVSKGHRQEDARLIFERMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYSDV 705

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F    +     +      +  DA  F   I  PS+NT     ++   +IY  L  IKGV 
Sbjct: 706  FYDIMINYSNSD------YLIDAIDFGFVIEKPSINTISYRDRIYKKKIYLGLKNIKGVP 759

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I   S ++PF S+EDF  R+  +      +  L+  GA D F  +R ++  +LD
Sbjct: 760  NDLAYWI---SKNQPFQSIEDFLMRLPQQFQKSGFISPLIAIGAFDEFDNNRRKITSNLD 816

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
            ++  +         N+  ++FA     +       +    ++S ++E EQ +LG   S H
Sbjct: 817  SLFTFV--------NELGSLFADTSYHWL------EVEDFSNSEKYEMEQDILGVGISPH 862

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAK 1025
            PL      + +   + +         +   +   +   +  +T+  G ++ ++T  +   
Sbjct: 863  PLVG----ISQKASRPFIPISQVQENSEATILVQLKQVKVIRTKSSGQQMAFLTVMDINS 918

Query: 1026 EYEANFFP 1033
            + +   FP
Sbjct: 919  KMDITVFP 926


>gi|162450012|ref|YP_001612379.1| DNA polymerase III, alpha subunit [Sorangium cellulosum 'So ce 56']
 gi|161160594|emb|CAN91899.1| DNA polymerase III, alpha subunit [Sorangium cellulosum 'So ce 56']
          Length = 1108

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/1100 (25%), Positives = 457/1100 (41%), Gaps = 130/1100 (11%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FV L   S +S LEGA     ++ +        +A+ D + ++ ++     A     
Sbjct: 6    SVPFVELCGRSCFSFLEGASHPEELVHRAKELGLEGLALCDRDGIYGSVRAHTAAKKVEQ 65

Query: 68   QPIIGCQLD-IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            + I+G +L     +   +   + +      PS+VLLV  +EGY  L  L++  +   +  
Sbjct: 66   RVIVGAELTLGAPRGGAERAPEVR------PSVVLLVEDSEGYANLCRLLTIAHAECEKG 119

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             +     +        GL  +      P+  A            L T +  FG+R  V  
Sbjct: 120  MASISAEA--IAAAQRGLSAIVPLD--PLVPAGVSG------ALLGTLRDAFGERALVAT 169

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD- 244
             +H    D  R +  +     H   +VAT   L+         DVL  +   T + Q   
Sbjct: 170  WKHLDRRDGERVAAALAAERRHGPCVVATARPLYHHPSRKPLADVLACIRTKTTLDQAGT 229

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R     + Y+++ ++M ++F D P  +  TVE+A RC F L   + +   F         
Sbjct: 230  RIAPNAEAYVRSGAQMAALFRDHPAWVARTVEVASRCRFSL---SELRYSFPSDALCMPG 286

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +  +  LR     G   R  +GA          R +++ EL +IA++  + YFL V   +
Sbjct: 287  ETSDQALRRLTEEGCRDRYPEGA------PPPVRAQIEKELALIAKLGVAPYFLSVQQVV 340

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            + A+   I +  GRGS A S   + L +T +DP R SLLFERFL+ +R   PD D+DF  
Sbjct: 341  KIARARQI-LCQGRGSAANSAVCFVLGVTAVDPARSSLLFERFLSEERHEPPDIDVDFEH 399

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI+ +   YG +R A +    + + K+ALR+VG+A      QVDRL  L+ +   
Sbjct: 400  ERREEVIQAIYEMYGRDRAAMVSEVIAYRGKSALREVGKAFGFSADQVDRLSGLVHHH-- 457

Query: 485  HPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                 +A   + R  EA L   D  V + + ++  LEG  RH S H  G V+   PL ++
Sbjct: 458  -----EADITEQRVSEAGLDPDDVRVRQAVMMASALEGFPRHLSIHVGGFVLSSEPLHKV 512

Query: 543  VPMYRDVRSDLPVTQFNMKWIEK--------------------AGLIKFD----FLGLKT 578
             P+         V  ++   ++                      GLI  D      G   
Sbjct: 513  APVEPARMEGRTVIPWDKDDLDDLGFFKIDVLALGMLTAIRKALGLIHSDRYAGLAGSSV 572

Query: 579  LTLLQKS-----------------------------LDFLAQRGVKVD----LSLIPFDD 605
             T    +                             + F A RG   D    L+ IP +D
Sbjct: 573  HTARDPAFAGPSVHTARDPAFAGPSVHTARDPAPAGVSFHAGRGAAFDPIAALAQIPPED 632

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
               Y  +    T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +   Y  
Sbjct: 633  PAVYEAIGRADTVGVFQIESRAQMAMLPRLKPNKFYDLVIEVAIVRPGPIQGGMVHPYLR 692

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
            R+ G+E  VS HP +DP+L+ T GV ++QEQVMQIA + +GY+  EAD LRR M   K  
Sbjct: 693  RRTGQEPPVSPHPCLDPILERTLGVPLFQEQVMQIAMVGAGYTPGEADQLRRDMAAWKKH 752

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +++ + R I G ++ GIS      +++ +  F +YGF +SHAA++A++ Y +AW+K H
Sbjct: 753  GRLERHRGRLIQGFAEQGISAKFGEMLYQQIQGFGEYGFPESHAASFALLVYASAWLKVH 812

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-------NRI 835
            +   F  A +  +           QDA++  +++ P  V     D  +           +
Sbjct: 813  HQAAFTCALLNAQPMGFYSPSALVQDAQRHGVEVRPVCVVQSAWDATLEPSAEPSAGPAL 872

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               +  +KG+G      I+ A  + PF SL D   R + KK     L             
Sbjct: 873  RLGMRLVKGLGEAAVAAIVAAREEAPFASLPDLVRRTELKKNEVEALAEAGAL---AALV 929

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R + L              + R  + E +F          + L          +   +
Sbjct: 930  PARREALW-------------RARAPRVEGLFEGVPIEQDRDVGLPPLRP---LEQLALD 973

Query: 956  QRVLGFYFSGHPLDVYKPILRKM----GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +G     HP+   +  L++      ++  EE  A   G ++R+A MVV +Q+  T  
Sbjct: 974  YGRVGLSLHDHPMRHVRRALKRRRGAGRVRTAEEIKAARDGESVRVAGMVVGRQRPATAS 1033

Query: 1012 GSRIGWVTFSEPAKEYEANF 1031
            G  + ++T  +         
Sbjct: 1034 G--VTFMTLEDETGVVNVIV 1051


>gi|227487016|ref|ZP_03917332.1| error-prone DNA polymerase [Corynebacterium glucuronolyticum ATCC
            51867]
 gi|227093090|gb|EEI28402.1| error-prone DNA polymerase [Corynebacterium glucuronolyticum ATCC
            51867]
          Length = 1045

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/1031 (25%), Positives = 439/1031 (42%), Gaps = 98/1031 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  L   SSYS L GA     ++++        +A+TD +  + A+ F++ A   G++ 
Sbjct: 49   AFAELHCTSSYSFLGGASDPEELVERAVQLGLTGLALTDRDGFYGAVAFAEAARDTGLET 108

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS- 128
            + G +L ++                   ++ +L    EGY  L  L++  ++    K   
Sbjct: 109  VFGAELSLEPD----------------RALTVLAIGYEGYVTLSHLITDAHMASGEKDVL 152

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
                L  +   G  GL +L       +D A+           L      F    + +  Q
Sbjct: 153  YYPPLETIAAAG--GLHVL-------VDHAWLP--------ELDRIVDCFGAQNVSLEYQ 195

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                 +   +   +  A      +++        +  + A          ++   +    
Sbjct: 196  VSGLPEDADQFADLDRADPRLSRILSGAPRAATIDVGHLAAAKAALARRESLSQAEPHLH 255

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 +L+    ++         +E TV +A RC+F   + +P LP +   E       E
Sbjct: 256  PLGAMWLRGADRLLRAAPGRERLVEETVRVAHRCAFAFDLVSPNLPLWDVPE---PYGNE 312

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR        VR      +    A   R++++ EL VI  + F GYFLIV D + + 
Sbjct: 313  MDYLRGIVDKRTPVRYHSRPESIKKKA---REQIERELAVIEELDFPGYFLIVNDIVDFC 369

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             + NI    GRGS A S   +AL IT ++P+   LLFERFL+PDR   PD D+D    RR
Sbjct: 370  HRENI-YCQGRGSAANSAVCFALGITAVEPIHAKLLFERFLSPDRDGPPDIDLDIEAGRR 428

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+YV  KYG +  AQ+    + + K A+RD GRAL  P   +D   + +   P    
Sbjct: 429  EEVIQYVYQKYGRDNAAQVANVITYRTKGAVRDAGRALGYPQGTIDAWSRGVEEPP---- 484

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                                 + ++ ++ + +G  RH   H+ G+VI DRP++ +VP   
Sbjct: 485  ---------------------EPVVALAAQFKGQPRHLGIHSGGMVICDRPIADVVPTEW 523

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                +  V Q++       GL+KFD LGL  L  L   +D +   RG  V L  IP DD 
Sbjct: 524  ARMENRSVIQWDKDAAAYGGLVKFDLLGLGMLGALHHMVDQVKTHRGTDVHLWEIPLDDP 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNR 664
              Y +L    T+G+FQ+ES      L  ++P    DI+  V+L RPGPI       Y  R
Sbjct: 584  HIYEMLQRADTVGVFQVESRAQMSTLPRLKPRRFFDIVVEVALVRPGPIQGGSVHPYIRR 643

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723
            +NG+E +   HP ++  L +T G+ ++QEQ+MQ+A+  +G++ +EAD LRRAM  K+  E
Sbjct: 644  RNGQEPVTYDHPCLENALGKTLGIPLFQEQLMQMAKDAAGFTGAEADELRRAMGSKRSPE 703

Query: 724  EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             M K KERF  G +  +GI+  +A  ++  +  FA YGF +SH+ ++A + Y +AW K +
Sbjct: 704  RMAKLKERFFDGLAATHGITGDVAQKLWMKMVAFAAYGFPESHSQSFAGLVYFSAWFKYY 763

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC--VDFKVGDNRIYYSLA 840
            YP EF    +  +       +    DAR+  I I+P  V       D   G   I   L 
Sbjct: 764  YPAEFTVGLLRAQPMGFYSPQSLIADARRHGITILPIDVQVSGEEADTADGGRAIRLGLN 823

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             + G+GT  A+ +      +PF S+ D   R D        +E+L  AGALD FG  R Q
Sbjct: 824  LVSGLGTAAAKRV---EKSQPFTSISDLSRRADLT---VSQVEALARAGALDSFGVDRRQ 877

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             L                 T K   +           ++       ++      +    G
Sbjct: 878  ALW----------QAGVAATEKPGMLPGLSA------VSAPALPGMSAFELMVADVASTG 921

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
               +  P+   +  L   GI    + ++    + + +A +V  +Q+  T  G  + ++  
Sbjct: 922  VTPTAQPVAYVREALAARGIVPASQLLSLPDASRVTVAGIVTHRQRPVTAGG--VTFLGV 979

Query: 1021 SEPAKEYEANF 1031
             + +       
Sbjct: 980  EDESGLMNVVI 990


>gi|298528545|ref|ZP_07015949.1| DNA polymerase III, alpha subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512197|gb|EFI36099.1| DNA polymerase III, alpha subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 782

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/796 (34%), Positives = 440/796 (55%), Gaps = 23/796 (2%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL  H+ YSL EG + +  +  K A  + PA++ITD+ NL+ A++    A   GI+PI
Sbjct: 4   FAHLHCHTEYSLFEGCIRIEELCSKAAEYKMPAVSITDSGNLYGAMKLYSAAREYGIKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IGC++++      K+T++ K  +     +VLL     GY  L++LVS  +L        R
Sbjct: 64  IGCEINLVPG---KVTDRDKFNY----HLVLLAMDLRGYHNLVKLVSAGWLQG-FYYKPR 115

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           +    LQ+  ++G+I L+    G +             +  + + +++ DR Y+ L+   
Sbjct: 116 VDKDMLQKY-SDGIIALSACLKGEVQYLLRAKGFDQGLEAAMQYARIYPDRFYLELEASG 174

Query: 191 GYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
             ++     ++++L+    LP+VA N+  +L+ +D EAH VL  + ++  + ++D   + 
Sbjct: 175 YNEQAEVNDRLMELSEKTGLPIVAANDCRYLTPQDAEAHAVLKCIKNAERLDEQDLDNLD 234

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
           T + Y K+  EM   FS  P ALEN  +I  +C+  L      LPR+       I+   +
Sbjct: 235 TRELYFKSPEEMEKEFSYCPTALENVHKIVEQCNLDLDSPKRHLPRYKP----TIEDTLD 290

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            EL   A+ GL+ +LA   +      + Y  RLD EL ++     S YFL+V D++ WA+
Sbjct: 291 KELTALALNGLDEKLA--TLPYKVDREKYFTRLDKELKILCEQGKSWYFLVVYDYVAWAR 348

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              I VGPGRGS  G +TAYAL IT IDP+   L FERF N  R  + D D+D CQ+RR 
Sbjct: 349 SRGIAVGPGRGSAPGCMTAYALGITGIDPILHKLHFERFCNTKRAGVVDIDVDLCQERRQ 408

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
           EV  YV  KYG   V  I  F  ++A+   RDV   + +   Q +R+ +LIP +P   +S
Sbjct: 409 EVFDYVFEKYGQNSVVYISVFICMRARTVFRDVSLVIGISPEQAERIIQLIPQEPGMTIS 468

Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            +A+  +   R     +  + R  +I  +LEGL RH ++HAA IVI +  L   +P+YR 
Sbjct: 469 -KAMEMEPALRSIMNDNEKMQRCFDICTRLEGLIRHITSHAARIVISNENLQDYLPLYRG 527

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHE 607
              +L + Q++   +E+ G   FD LGLK L+L+ ++LD +     +  D+  +P DD +
Sbjct: 528 RNHEL-IAQYDYNDLERLGFPGFDLLGLKYLSLISRTLDLIKASQKQAPDMDSLPLDDAK 586

Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRK 665
           T+ L+    T G FQLE  G RQ L  ++P+ +ED+ A+++LYRPGP+ + +   +  R+
Sbjct: 587 TFVLIEQGHTDGAFQLEGDGFRQYLRELKPERLEDLAAMLALYRPGPLVSGMLSNFIKRR 646

Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
           +G+      H  +  +LKET G+IIY EQVM IA  ++G+SL +A++L + +  K  E +
Sbjct: 647 HGRVAAEYAHAELADILKETHGMIIYHEQVMTIAHKIAGFSLEDAEILAKNLVGKKPEAL 706

Query: 726 DKQKERFISG-ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +QKE+FI G   KN +    A  IF+++ +   YG+ K+H+ AYA+ISYQTA++K +YP
Sbjct: 707 IQQKEKFIKGAMQKNNVPVKTAEQIFDMMKQAGPYGYLKAHSIAYAMISYQTAFLKANYP 766

Query: 785 VEFLAASMTLEMDNVE 800
            EF  A  T+   N++
Sbjct: 767 EEFQQAKDTVFGKNMK 782


>gi|260574122|ref|ZP_05842127.1| DNA polymerase III, alpha subunit [Rhodobacter sp. SW2]
 gi|259023588|gb|EEW26879.1| DNA polymerase III, alpha subunit [Rhodobacter sp. SW2]
          Length = 929

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/982 (25%), Positives = 427/982 (43%), Gaps = 75/982 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FV L   S++S L GA     ++ +     QPA+AI D N++   +     A       
Sbjct: 2   PFVELSATSNFSFLTGASHPEELMQRAHELGQPALAIADENSVAGIVRAHVAARE----- 56

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
                +        ++    +          +L      + RL  L++    L + + + 
Sbjct: 57  -----IARSDGQAPRLIPAARIVTRDGFVATVLPRDRAAWGRLCRLLT----LGRRRAAK 107

Query: 130 RICLSWLQEIGTEG----LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             C   L ++   G    +++     +G + +A                 + F  ++ + 
Sbjct: 108 GACDLGLDDLLDWGEGQEMLLHPARYAGWVAQAG-------------RLARQFPGQVSLL 154

Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           L   + G D  R +++  +A    +P VA+   +       +  DVL A+     V Q  
Sbjct: 155 LAPRYDGQDAARFARLEGVAARLGIPTVASALPMMHHGARRKLADVLAAIRLGCRVEQLG 214

Query: 245 RPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
           R  +   +  L++  EM+ +F+    A+  + EIA R  F L +     P  I +     
Sbjct: 215 RRALPHAEQRLRSEPEMLRLFAGFEAAVARSAEIAARLEFSLDMLRYEYPSEITE----- 269

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +     L   A AGL  R   G  AK       + +L  EL +I+++ +  YFL V D 
Sbjct: 270 GETAAGRLARLAQAGLHWRYPAGIPAKP------QAQLAHELALISKLHYEPYFLTVHDI 323

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           + +A+   I +  GRGS A SV  YAL +T + P   +++FERF++  R   PD D+DF 
Sbjct: 324 VAFARGRGI-LCQGRGSAANSVVCYALGVTSVSPEIGTMVFERFVSEARDEPPDIDVDFE 382

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            +RR+EVI+++  +YG  R     T    + K A+R+VGRA+ +    +  +   I    
Sbjct: 383 HERREEVIQHIYARYGRHRAGLCATVIHYRGKRAVREVGRAMGLSEDTLAAMSSQIWGWG 442

Query: 484 AHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
              +      +D+R RE  L  AD  + + L + ++++G  RH S H  G +I +  L +
Sbjct: 443 GKGI------NDARLREIGLDPADKRLAQTLALVEEIQGFPRHLSQHVGGFIITEGRLDE 496

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600
           LVP+      D  V  ++   I+  G++K D L L  L+ ++K+ D L      +  L+ 
Sbjct: 497 LVPIENATMDDRTVICWDKDDIDALGILKVDILALGMLSCIRKAFDLLEKHHHTRYSLAT 556

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
           +P +D  TY +L    +LG+FQ+ES      L  M+P    D++  V++ RPGPI  D +
Sbjct: 557 LPAEDAATYDMLCRADSLGVFQVESRAQMNFLPRMRPRKFYDLVIQVAIIRPGPIQGDMV 616

Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             Y  R+NG+E +      +  +L +T GV ++QEQ MQIA + +G+S  EAD LRRA+ 
Sbjct: 617 HPYLRRRNGQEVVTFPSDELGRVLGKTLGVPLFQEQAMQIAIIGAGFSPLEADRLRRALA 676

Query: 719 K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K    +   KERF+ G + NG  +  +   F  +  F  YGF +SHAA++A + Y +A
Sbjct: 677 TFKKHGNVTALKERFLQGMAANGYEEDFSNRCFSQIEGFGSYGFPESHAASFAFLVYASA 736

Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN---- 833
           W+K H+P  F  A +  +        +  +DAR   ++++PP +N    D  +       
Sbjct: 737 WIKHHHPGIFACALLNSQPMGFYAPAQIVRDARAHGVRVLPPCINASHWDNVMEACGDQL 796

Query: 834 RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +      IKGV    A  I+ A  +  + + ED   R     +    L  L  A     
Sbjct: 797 ALRLGFRQIKGVAEDEALWIVAARGNG-YTAPEDVWRRA---AIPPATLTRLAEADCFAS 852

Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
              SR   L +   +            +    +FA++           +F+      +  
Sbjct: 853 LNLSRRDTLWAARALP----------ADTPLPLFANDIDGEGIIEPNLRFAAMTEGEQVV 902

Query: 954 NEQRVLGFYFSGHPLDVYKPIL 975
            +   +      HP+ + + +L
Sbjct: 903 EDYVAMRLTLRRHPMALLRHLL 924


>gi|329768254|ref|ZP_08259755.1| hypothetical protein HMPREF0428_01452 [Gemella haemolysans M341]
 gi|328837453|gb|EGF87082.1| hypothetical protein HMPREF0428_01452 [Gemella haemolysans M341]
          Length = 1089

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/1039 (29%), Positives = 539/1039 (51%), Gaps = 84/1039 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            + +LQVHS+Y LL   +   ++  K+A D Q ++ I D  N++ A++  +++  AGI  I
Sbjct: 2    YYNLQVHSAYDLLNSTIKYESLFLKLARDNQRSVVIVDP-NMYGAIKAYKESKRAGINLI 60

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G ++ +         N             +L  + + + +L+E+ ++   ++  + ++ 
Sbjct: 61   QGLEVSLGYGIGFLKFN-------------ILCKSEKMFYKLLEISTK--FMNGEEWTIE 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               S ++E   + +++                   V ++   + +  + + L+ N   + 
Sbjct: 106  DFSSEMKEYSDDFVLI-------------------VVDELRDSMEFSYLNNLFSNYDFYF 146

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G++   +       Y+    +V T  S +L++E+Y+   V  A+  +  ++ ++   ++ 
Sbjct: 147  GFNESFQVSP----YSFYENIVYTKPSYYLNKENYQQVIVSRAIRDNKKLNIQELTIISG 202

Query: 251  DHYLKNR-----------SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            D +++ +            E+  IF    ++ EN   I  +C + L      LP+++  E
Sbjct: 203  DEFVRKQKDFEEILALGDEELQMIFK---KSFENQQNIVDKCQYELNFSGYHLPKYVYGE 259

Query: 300  CDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             +DI      +  L      G++ +L       G     Y++R  +EL +I  M F+ YF
Sbjct: 260  KEDIYSKFSSKEYLHFLVQKGVKGKLV------GKDLYPYKKRYSYELKIIDEMGFNDYF 313

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DF+++AK N I VG GRGS AGS+  Y L IT+ DPL ++LLFERFLN +R+SMPD
Sbjct: 314  LIVYDFVKYAKDNGILVGAGRGSAAGSLVCYLLDITEADPLEYNLLFERFLNKERISMPD 373

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             DIDF   RRDEVI+YV+ KYG ++VAQIITF + Q+K+A R+  R LQ     +    K
Sbjct: 374  IDIDFQDTRRDEVIKYVEEKYGQDKVAQIITFTTFQSKSAARESARILQFDEQTL----K 429

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
             I ++ +   +L+         R          R   I+  LE L ++ S HAAGIVI D
Sbjct: 430  FISSNISSTRTLKECYEMSEELRAFINQSNINKRWFSIALSLENLPKNPSVHAAGIVISD 489

Query: 537  R-PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
              PL    P+     +   +TQ+ M  +E  GL+K DFLG++ LT++   ++ + +    
Sbjct: 490  DKPLVNYAPLAESNMTKY-LTQWTMDDVESVGLLKIDFLGIRYLTMVSSVVEEVKKENPT 548

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             D++ I + D + Y L     T GIFQ ESSGM++ L  ++P    DI+A+ +LYRPGP+
Sbjct: 549  FDITKINYQDPKVYELFAKGKTEGIFQFESSGMKEKLNLLKPTEFNDIVAMNALYRPGPM 608

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I VY  RKN +E++V  HP ++ +LK+T GVI+YQEQ+M IA   +  SL+EAD +RR
Sbjct: 609  AQIEVYVRRKNKEEQVVYPHPHLEKILKDTYGVIVYQEQIMLIAVNFAHMSLNEADNMRR 668

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            A+ KK KE+++     F+  +   G    +A  +F+L+  FA+YGFNKSHA  Y++++Y+
Sbjct: 669  AVSKKKKEDLEYYGRIFVEKSVAVGYDLQVAKKLFDLIVTFANYGFNKSHAVVYSMLAYR 728

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
             A++K +Y   F+ A +   + + +KI ++ Q+     I ++ P VN    +F V  N I
Sbjct: 729  LAYLKVYYTKYFMTALLNNVISSEKKINEYKQELNNLGINLVKPDVNRSLSNFSVYKNDI 788

Query: 836  YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             ++L AIK VG  +   I++   +   +  ++DF  R++ KK++ +   SLV AGALD F
Sbjct: 789  VFALTAIKNVGYRSGYEIVQDRINFGRYLDIDDFLKRMN-KKVDYQAAVSLVKAGALDTF 847

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            GY+R  L++ +D+     +    N         + E G     + +E+    + + + + 
Sbjct: 848  GYNRATLMKKVDDYYSDNRQYINNVRVA----LSAESGL---TLKVEEVEDYSITEKIQM 900

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+ V G YF  HP+ V K    K      +   A +  + +     ++++++ KT+ G  
Sbjct: 901  EKEVTGTYFLKHPVQVEKE---KYSYLPLQYIGAELSDSYVE----IITRKEIKTKNGDY 953

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + ++T ++   +Y+   FP
Sbjct: 954  MAFLTVNDGKNDYDVTVFP 972


>gi|319938926|ref|ZP_08013290.1| DNA-directed DNA polymerase subunit III alpha [Streptococcus
            anginosus 1_2_62CV]
 gi|319811976|gb|EFW08242.1| DNA-directed DNA polymerase subunit III alpha [Streptococcus
            anginosus 1_2_62CV]
          Length = 1033

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/1025 (28%), Positives = 500/1025 (48%), Gaps = 105/1025 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + Y+ ++  +S+   ++         + I D +NL+ A  F + A   GIQP++
Sbjct: 3    AQLDTKTVYTFMDSLISIKKYVETAKNLGYQTLGIMDIDNLYGAYHFMETATEQGIQPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +D                   ++  L   ++GY+ L++L +   +   GK     
Sbjct: 63   GVEMTLDYT-------------GLPLNLRFLALDSQGYRNLMKLSTLKMI---GKSKWEE 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L+     G+ ++             F   +  +     +  +F D           
Sbjct: 107  FQHLLE-----GIAIIVP----------VFEDIEALDLGREFYIGVFPD----------- 140

Query: 192  YDRYRESQVVQLAYTH-ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                      + A++H  LPL       +    D E   +L A+  ++ + +     +  
Sbjct: 141  --------TPKKAFSHATLPL---QTVRYFDAGDLETLQMLCAIRENSSLREVG--NLPN 187

Query: 251  DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              YL +  +    F +  PE+L+N   +     + +      LPRF      + ++    
Sbjct: 188  HEYLLSSEQFTQSFQENYPESLDNLKRLVAGIHYEINTEL-KLPRF------NPERPAAE 240

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL+ +A AGLE         K  ++  Y++RL  EL+V+ +M F  YFLIV D +++ + 
Sbjct: 241  ELQERAEAGLEK--------KRLNSLVYKERLQQELSVVHQMGFDDYFLIVWDLLRFGRS 292

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS  GS+ AYAL IT IDP+  +LLFERFLN +R +MPD DID     R E
Sbjct: 293  QGYYMGMGRGSAVGSLVAYALEITGIDPVEKNLLFERFLNVERYTMPDIDIDIPDIYRPE 352

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + + I          
Sbjct: 353  FIRYVRDRYGTMHAAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITRKISFRDNLT--- 409

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A   +  FR+   +     +  EI++K+EG  R  S HAAG+V+ D  L+  +P+    
Sbjct: 410  SAYEKNMSFRQIINSKLEYQKAFEIAKKIEGNPRQTSIHAAGVVMSDNDLTDHIPL--KY 467

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L + GV +D++ I  +D  T
Sbjct: 468  GEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEAALEKYGVAIDIAKINLEDAAT 527

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ +QP   E+++A  SL RPG  D I  +  RK+G+
Sbjct: 528  LQLFAAGRTKGIFQFEQAGAINLLKRVQPAQFEEVVATTSLNRPGASDYIDNFVRRKHGQ 587

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EK+  + P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM K 
Sbjct: 588  EKVEMLDPSLEDILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNIAEMHKM 647

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  F++GA + G S+T A  +F ++ KFA YGFN+SHA AY+ +++Q  + K HYP  F 
Sbjct: 648  EAEFVTGALELGHSETKAKEVFAVMEKFAGYGFNRSHAYAYSALAFQLTYFKAHYPDIFF 707

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA +F+ Q+   ++N      K  D +IY  L  IKG+   
Sbjct: 708  DIMLNYSSSD------YITDALEFDFQVASLNINNIPYRDKFQDKQIYLGLKNIKGLPRD 761

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E   ++PF ++EDF  ++ ++    +++  LV  G  D F  +R ++LQ+L N+
Sbjct: 762  FAYWIIE---NRPFTNVEDFIMKLPTQYHKIQLITPLVQVGLFDVFEKNRQKILQNLPNL 818

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +A        ++  ++FA    ++++            + +FE E+ ++G   S HPL
Sbjct: 819  FVFA--------DELGSLFADTNYSWTEA------EDYTEAEKFELEKEIIGVGLSEHPL 864

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                  L K   + +      +  N+  +   ++S +  +T+ G  + ++  S+  ++ E
Sbjct: 865  ----VKLAKTATQSFTPIQELVENNHATILGEILSIRVIRTKTGENMAFLQVSDAKRKME 920

Query: 1029 ANFFP 1033
               FP
Sbjct: 921  VTVFP 925


>gi|187923381|ref|YP_001895023.1| DNA polymerase III subunit alpha [Burkholderia phytofirmans PsJN]
 gi|187714575|gb|ACD15799.1| DNA polymerase III, alpha subunit [Burkholderia phytofirmans PsJN]
          Length = 1193

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/1120 (22%), Positives = 443/1120 (39%), Gaps = 120/1120 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   +++S L GA   + ++++  +    A+AITD  +L   +           +
Sbjct: 19   PAYAELHCLTNFSFLRGASHPHELVEQAMSRGYSALAITDECSLAGVVRAHTALKEIKTE 78

Query: 69   P-------------------------IIGCQLDIDMQDNLKMTNQGKTPF---------- 93
                                      I   Q +   Q+  +       P           
Sbjct: 79   RERQQKEREDKANTAQSEAPSEDGTQIEASQQETAPQETAEAEAPKPLPHLIIGSELNLT 138

Query: 94   ----PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
                    ++V L +   GY  L EL++        K S R+  S           + T 
Sbjct: 139  DETGDPFCTLVALATNRNGYGNLSELITLARSRAD-KGSYRLGPSDFTASLPHLAHLKTL 197

Query: 150  GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHE 208
                 +       +     +           R ++ L+    G D  +   +  ++    
Sbjct: 198  PDCVLMLVPQRTATLSHTLRCAHWLASFAAQRAWIALELWQTGSDDLQIDALRMISKASG 257

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDL 267
            LPLVA    L  +       D + A+   T +SQ         + +++ R  +  ++   
Sbjct: 258  LPLVAAGGVLMHARSRKPLQDTMTAIGLVTPLSQCGHALEANAERHMRTRVRLGKLYPR- 316

Query: 268  PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
             + LE T+ IA  C F L       P  +    +       + LR   +AG   R  +G 
Sbjct: 317  -DTLEETLRIAALCRFSLDELKYEYPEELVPAGE----SPSSYLRKLVMAGAMERWPKGI 371

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
              K         +++ EL +IA +K+  YFL V D + +A+  NI +  GRGS A S+  
Sbjct: 372  DLKRIG------QIEKELGLIADLKYEKYFLTVHDIVSFARSRNI-LCQGRGSAANSIVC 424

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            Y L +T+IDP+  ++L ERF++  R   PD D+DF   RR+EVI+Y+  KYG  R A   
Sbjct: 425  YCLHVTEIDPVHMNMLIERFISRARNEPPDIDVDFEHQRREEVIQYIYTKYGRHRAALTA 484

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            +  +  A++AL+DVG+AL +  S ++R+ K            + +A+             
Sbjct: 485  SLITYHARSALKDVGKALGLEVSLIERISKSQQWWDGTDAVAKYLAE----AGFDANSHI 540

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
               L+ ++++L    RH S H  G VI    LS+LVP+      D  V +++   I+   
Sbjct: 541  TQNLIRLTKELRAFPRHLSQHVGGFVIAKDKLSRLVPIENATMKDRSVIEWDKDDIDALK 600

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS--LIPFDDHETYHLLTTKGTLGIFQLES 625
            L+K D L L  L+ ++++L+F+A R      S   IP +D   Y +     T+G+FQ+ES
Sbjct: 601  LLKVDVLALGMLSAIRRALEFVALRRGFPKFSVQDIPREDRAVYEMCGHADTIGVFQIES 660

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLK 683
               +  L  ++P+   D++  V++ RPGPI   +   Y  RK G E +      + P+L+
Sbjct: 661  RAQQSMLPRLKPNKYYDLVIEVAIVRPGPIQGGMVHPYLRRKQGLEAVDYAKDELRPVLE 720

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGIS 742
             T GV I+QEQVM +A + + Y+  +AD LRRAM    +   + K ++       K G  
Sbjct: 721  RTLGVPIFQEQVMHLAMVAAKYTGEQADQLRRAMAAWRRSGNLAKYQKDLNERMLKRGYE 780

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
            +     I + +  F +YGF +SHAA++A++ Y +AW+K + P  FLA  +  +       
Sbjct: 781  QEFIDRICKQIEGFGEYGFPESHAASFALLVYLSAWLKRYEPAAFLAGLLNSQPLGFYSP 840

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVG-----------------DNRIYYSLAAIKGV 845
             +  QDA++  ++++PP V     +                       +   S   ++ +
Sbjct: 841  SQLVQDAKRHGVEVLPPDVTLSDWESTFERRGHEGQRISADETCLHRQQAVLSAQQLRDL 900

Query: 846  G----------TTTARHIMEA--------SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                          A+ +            A  P   +     +  S+    R++ +   
Sbjct: 901  SLRRLTVSRTVRRAAQRLTARVFQPSHTYGARGPAVRIGMHLIKGFSQAAAERIMAARNE 960

Query: 888  AGALDCFGYSRMQLLQ--------------SLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            A   D    +R   L               S+   ++ A W    +    + +   +   
Sbjct: 961  APFTDVDDLARRAALTRRDLEALAAANALVSIAGHRREAWWAVTAQHTVPKLL--RDAPI 1018

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
                + L + +     V   ++   LG   + HPL + +  L +   +   E  A   G 
Sbjct: 1019 AEAPLMLPQAAESREIV---DDYASLGLTLNRHPLALLRARLAQHRFRTAAELAACQHGT 1075

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              R   +V  +Q+  T  G+   +V+  +         +P
Sbjct: 1076 LARACGIVTVRQRPGTANGT--VFVSIEDETGSINVIVWP 1113


>gi|297624571|ref|YP_003706005.1| DNA polymerase III subunit alpha [Truepera radiovictrix DSM 17093]
 gi|297165751|gb|ADI15462.1| DNA polymerase III, alpha subunit [Truepera radiovictrix DSM 17093]
          Length = 1719

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/848 (35%), Positives = 443/848 (52%), Gaps = 98/848 (11%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAAD--QQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           F HL  H++YSLL+GA  + +++  +     + P +A+TD  N+  A+EF + A   G++
Sbjct: 27  FAHLHQHTAYSLLDGAARIKDLMAWVKEVSPENPTVAMTDHGNMHGAVEFYKTAEKFGVK 86

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTP--FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           PI+G +  +      +                + LL    +GYQ L +L SR +L     
Sbjct: 87  PILGFEAYVTAGSRFEKRRPAGASKLDGGYFHLTLLAKNFKGYQNLCKLNSRGWLEG-FY 145

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              R+    L+E  +EG+I L+G     + R       +  E+ L  +  ++GD  ++ L
Sbjct: 146 MKPRVDHELLREY-SEGVIALSGCLGAQLPRYLLDLGEEAGEEILKQYLDIYGDNFFIEL 204

Query: 187 QRHRGYDR---------------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
           Q H   +                     +  LA+ + L +VATN+  ++ + D +AH+ L
Sbjct: 205 QNHVPENPSEMTESLRELTEQQTRLNPMLKSLAHKYGLGMVATNDGHYVKKGDAKAHEAL 264

Query: 232 MAVAHSTVVSQKDRPRVTPDHYL-KNRSEMVSIF--SDLPEALENTVEIARRCSFILQVH 288
           +A+   T +S  +R R   D +  K   EM      S+   AL N+V +A  C+  L + 
Sbjct: 265 LAIQTKTTLSDPNRFRFPCDEFYVKTPEEMARAIPESEYEGALSNSVLVAEMCNVELPIG 324

Query: 289 A---PILPRFIEKECDDIQK---------------------------------------E 306
           +     +P         + +                                        
Sbjct: 325 SKRVYQMPELPVPAGRTLAEQLRVQTYEGLLARYPVIDEALLRRYLALSEVAPKLGPLNT 384

Query: 307 EENELRNKAVAG-------------------LEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
            E  L   A AG                   LE   AQG +++        +R ++EL V
Sbjct: 385 LEEVLSGLATAGEVCQRRAREEGTKYVSYAHLEKLKAQGGVSEEALT--ILERAEYELGV 442

Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
           I  M F  YFLIVADFI WAK   I VGPGRGSGAGS+ AYA  ITDIDPL F LLFERF
Sbjct: 443 IIAMGFPDYFLIVADFINWAKSQGIAVGPGRGSGAGSLVAYATRITDIDPLAFDLLFERF 502

Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
           LNPDR+SMPDFD+DF   RR EV+ YV+ KYG E+VAQI TFG++ +KAA+RD  R L++
Sbjct: 503 LNPDRVSMPDFDVDFSDARRMEVVDYVRRKYGEEKVAQIATFGTMASKAAVRDAARVLEV 562

Query: 468 PYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
           PY+  D + KLIP        + +A+ + S  R            ++++  LEGL RHAS
Sbjct: 563 PYADADAVSKLIPVVFGRSTPIKKALEEVSEIRTLYEG--GAKEFMDVAMTLEGLTRHAS 620

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            HAAG++I   P+ +L P++R       V Q++M  +E+ G +K DFLGL+TLT ++ ++
Sbjct: 621 VHAAGVIIAREPIQELAPVFR-SGDGPIVCQYDMGSVEELGFLKMDFLGLRTLTFIETAV 679

Query: 587 DFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             + + RGV +D    P  D +T+ LL+     G+FQ ES GM   L+ ++P+ I+D+IA
Sbjct: 680 RIIEESRGVTLDPDAFPQGDPKTFELLSRGEAAGVFQFESPGMVDTLKKLRPNRIQDLIA 739

Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVS------IHPLIDPMLKETQGVIIYQEQVMQIA 699
           + +LYRPGP++NI  Y  R +G E++            + P+L+ET G+ +YQEQ+MQIA
Sbjct: 740 VSALYRPGPMENIPTYIRRHHGLEEVDYTAQFPVAGEYLAPILEETYGIPVYQEQIMQIA 799

Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
           Q ++GY+L EAD+LRRAMGKK  EEM KQ+E F++GA+K GI    A  IF+LL KFA+Y
Sbjct: 800 QAVAGYTLGEADLLRRAMGKKKVEEMLKQREVFLAGAAKKGIPAAEASAIFDLLEKFANY 859

Query: 760 GFNKSHAA 767
           GFNK    
Sbjct: 860 GFNKCLVG 867



 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 140/282 (49%), Gaps = 15/282 (5%)

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
             + SH+AAY  +SYQTA++K HYPVEF AA +T+E  + +K+ ++  DAR+  +Q++PP 
Sbjct: 1292 VHNSHSAAYGALSYQTAYLKAHYPVEFTAALLTVERGDSDKVAQYVTDARKLGVQVLPPD 1351

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
            +N    DF      + + L  IK VG     HI+E     PF  L DFC RVDS  +N+R
Sbjct: 1352 INESRSDFTPVGEVVRFGLYGIKNVGDGAVEHILEVRKAGPFKDLFDFCKRVDSSLVNKR 1411

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE LV AGA D  G  R  +L +L++  K+     +       ++F  E+     ++ +
Sbjct: 1412 ALEHLVKAGAFDKLG-DRSAMLANLESAMKWGAAQREQAAAGQLSLFGAEE-VKPPEVKV 1469

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG-------YEESVATIRG- 992
            EK    ++      E+  LG Y S HP++ Y P L              Y E VA  RG 
Sbjct: 1470 EK--PYSTLELLRFEKEALGLYISDHPMNSY-PGLAHAASCTVAGLEACYRELVAASRGE 1526

Query: 993  --NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                + LA ++ +  +K  R G+ + +   ++     E   F
Sbjct: 1527 TRQRLVLAGIMQNVVKKAARSGNMMAFFDLTDETGSKEVVAF 1568


>gi|15672478|ref|NP_266652.1| DNA polymerase III DnaE [Lactococcus lactis subsp. lactis Il1403]
 gi|14194667|sp|Q9CI70|DPO3A_LACLA RecName: Full=DNA polymerase III subunit alpha
 gi|12723378|gb|AAK04594.1|AE006285_2 DNA polymerase III, alpha chain 2 [Lactococcus lactis subsp. lactis
            Il1403]
 gi|326406024|gb|ADZ63095.1| DNA polymerase III subunit alpha [Lactococcus lactis subsp. lactis
            CV56]
          Length = 1060

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/1031 (27%), Positives = 506/1031 (49%), Gaps = 89/1031 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS L+  + +++ L+         + I D  NL +A  F +KA    +QPI
Sbjct: 2    FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            I  +L+ + +                 +   +    EGY+ L+ + +   L + G++   
Sbjct: 62   ISIELNFEWR-------------GLPIAFSFIAKDTEGYKNLLRIST---LHNYGRRQFS 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               + L      G+ ++   + G +        S VA++  +                  
Sbjct: 106  DIQNHL-----SGIALIIPETYGSLSE--LTELSSVADEAFI------------------ 140

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D+  +           LP +      +L+  D E   +L AV       +     ++ 
Sbjct: 141  GIDQLTDK-----GAKFNLPTLPFPAIRYLNFADNEILAILHAVRDGVSFDES--LTISS 193

Query: 251  DHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            +  L+      + F    P+AL+N   +  + ++       + PRF      D +++   
Sbjct: 194  NELLQRPEAYETYFLKYFPQALKNLSALTAKIAYQFDEKLEL-PRF------DKKRQAVE 246

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQD------YRQRLDFELNVIARMKFSGYFLIVADF 363
             LR +A  GL  RL +  +     + +      Y++RL+ EL+VI +M F  YFLIVAD 
Sbjct: 247  HLREEATLGLSARLEEKNLLTEVSSVNLQDLSVYQERLEKELSVIHQMGFDDYFLIVADL 306

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A++ +I  G GRGS AGS+ AY L IT +DP++ +L FERFLNP+R++MPD DID  
Sbjct: 307  LRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVAMPDIDIDMP 366

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR E++ Y++N+YG + VAQI+TF +L  + ALRDVG+A  M  +++  L +++    
Sbjct: 367  DDRRAELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLTRMLVRRF 426

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                      ++ RF+   L +  + R+ E+++++EG+ R  STHA+G+V+ +  L   V
Sbjct: 427  G--TLADEYENNQRFKAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVVLSEESLVNYV 484

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
             +      DL +TQ+    +E  GL+K DFLGL+ LT++ +  D + +R  + +D   I 
Sbjct: 485  SL--KPSEDLALTQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLVKRRQKIDIDPLKIN 542

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D +T  L     T+GIFQ E+  MR+ L  + P   +DI+   S++RPGP   I  + 
Sbjct: 543  LEDEDTLALFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQFIPQFV 602

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R++GKE + ++   I  +LK T G++IYQEQ+MQ+AQ  +G+SL +AD+LRRA+ KK  
Sbjct: 603  ARRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKKKG 662

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             E++K +E F+  AS NG SK  A  I++L+ +FA+YGFN+SH  AY  +++Q A+ K H
Sbjct: 663  SELEKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFKAH 722

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            +P EF    +        K +    DA +   +I  PS+N   +   V + +I   LA +
Sbjct: 723  FPDEFYEIQLRDR-----KREVMILDALENGFEIEKPSINLMKIGDFVKNKKIRLGLAHV 777

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            +G+    A+ I+E   ++P+  L DF  ++ +    +  +  L+  GA D    +R +L 
Sbjct: 778  QGISRDLAKWIVE---NQPYKDLADFVEKLPNNFHKKENILPLIQIGAFDYADSNRGKLA 834

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             +L +      +         ++IF    G        E +S    + +++ E+ +LG  
Sbjct: 835  YNLADHANLLNYYS-------DDIFMASSGGGFAYHEAEDYSE---TEKYDFEKNLLGIG 884

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             + HPL                +    ++   + +   +   +  +T+ G  + ++T S+
Sbjct: 885  VTPHPLQNLARRFEG-NFTPLAQL---VKNRRMTILVEINYIRTHRTKTGQTMAFLTVSD 940

Query: 1023 PAKEYEANFFP 1033
              + ++   FP
Sbjct: 941  SRENFDVTLFP 951


>gi|227541821|ref|ZP_03971870.1| error-prone DNA polymerase [Corynebacterium glucuronolyticum ATCC
            51866]
 gi|227182264|gb|EEI63236.1| error-prone DNA polymerase [Corynebacterium glucuronolyticum ATCC
            51866]
          Length = 1045

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/1031 (25%), Positives = 438/1031 (42%), Gaps = 98/1031 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  L   SSYS L GA     ++++        +A+TD +  + A+ F++ A   G++ 
Sbjct: 49   AFAELHCTSSYSFLGGASDPEELVERAVQLGLTGLALTDRDGFYGAVAFAEAARDTGLET 108

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS- 128
            + G +L ++                   ++ +L    EGY  L  L++  ++    K   
Sbjct: 109  VFGAELSLEPD----------------RALTVLAIGYEGYVTLSHLITDAHMASGEKDVL 152

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
                L  +   G  GL +L       +D A+           L      F    + +  Q
Sbjct: 153  YYPPLETIAAAG--GLHVL-------VDHAWLP--------ELDRIVDCFGAQNVSLEYQ 195

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                 +   +   +  A      +++        +  + A          ++   +    
Sbjct: 196  VRGLPEDADQFADLDRADPRLSRILSGAPRAATIDAGHLAAAKAALARRESLSQAEPHLH 255

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 +L+    ++         ++ TV +A RC+F   + +P LP +   E       E
Sbjct: 256  PLGAMWLRGADRLLRAAPGRERLVKETVRVAHRCAFAFDLVSPNLPLWDVPE---PYGNE 312

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR        VR      +    A   R++++ EL VI  + F GYFLIV D + + 
Sbjct: 313  MDYLRGIVDKRTPVRYHSRPESIKKKA---REQIERELAVIEELDFPGYFLIVNDIVDFC 369

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
               NI    GRGS A S   +AL IT ++P+   LLFERFL+PDR   PD D+D    RR
Sbjct: 370  HHENI-YCQGRGSAANSAVCFALGITAVEPIHAKLLFERFLSPDRDGPPDIDLDIEAGRR 428

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+YV  KYG +  AQ+    + + K A+RD GRAL  P   +D   + +   P    
Sbjct: 429  EEVIQYVYQKYGRDNAAQVANVITYRTKGAVRDAGRALGYPQGTIDAWSRGVEEPP---- 484

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                                 + ++ ++ + +G  RH   H+ G+VI DRP++ +VP   
Sbjct: 485  ---------------------EPVVALASQFKGQPRHLGIHSGGMVICDRPIADVVPTEW 523

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                +  V Q++       GL+KFD LGL  L  L   +D +   RG  V L  IP DD 
Sbjct: 524  ARMENRSVIQWDKDAAAYGGLVKFDLLGLGMLGALHHMVDQVKTHRGTDVHLWEIPLDDP 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNR 664
              Y +L    T+G+FQ+ES      L  ++P    DI+  V+L RPGPI       Y  R
Sbjct: 584  HIYEMLQRADTVGVFQVESRAQMSTLPRLKPRRFFDIVVEVALVRPGPIQGGSVHPYIRR 643

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723
            +NG+E +   HP ++  L +T GV ++QEQ+MQ+A+  +G++ +EAD LRRAM  K+  E
Sbjct: 644  RNGQEPVTYDHPCLENALGKTLGVPLFQEQLMQMAKDAAGFTGAEADELRRAMGSKRSPE 703

Query: 724  EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             M K KERF  G +  +GI+  +A  ++  +  FA YGF +SH+ ++A + Y +AW K +
Sbjct: 704  RMAKLKERFFDGLAATHGITGDVAQKLWMKMVAFAAYGFPESHSQSFAGLVYFSAWFKYY 763

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC--VDFKVGDNRIYYSLA 840
            YP EF    +  +       +    DAR+  I I+P  V       D   G   I   L 
Sbjct: 764  YPAEFTVGLLRAQPMGFYSPQSLIADARRHGITILPIDVQVSGEEADTADGGRAIRLGLN 823

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             + G+G+  A+ +      +PF S+ D   R D        +E+L  AGALD FG  R Q
Sbjct: 824  LVSGLGSAAAKRV---EKSQPFTSISDLSRRADLT---VSQVEALARAGALDSFGVDRRQ 877

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             L                 T K   +           ++       ++      +    G
Sbjct: 878  ALW----------QAGVAATEKPGMLPGLSA------VSAPALPGMSAFELMVADVASTG 921

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
               +  P+   +  L   GI    + ++    + + +A +V  +Q+  T  G  + ++  
Sbjct: 922  VTPTAQPVAYVREALAARGIVPASQLLSLPDASRVTVAGIVTHRQRPVTAGG--VTFLGV 979

Query: 1021 SEPAKEYEANF 1031
             + +       
Sbjct: 980  EDESGLMNVVI 990


>gi|297580888|ref|ZP_06942813.1| DNA polymerase III [Vibrio cholerae RC385]
 gi|297534714|gb|EFH73550.1| DNA polymerase III [Vibrio cholerae RC385]
          Length = 649

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/664 (40%), Positives = 394/664 (59%), Gaps = 27/664 (4%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G
Sbjct: 2   SDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG 61

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +
Sbjct: 62  VKPIIGA----------DFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQ 111

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L
Sbjct: 112 HQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLEL 170

Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 171 IRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246 P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
           P   +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 231 PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----G 285

Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286 MAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 345

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
           DP   +  +A   +   +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466 DPGMTLE-KAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
             P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525 FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584

Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ 
Sbjct: 585 RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644

Query: 657 NIVV 660
           + +V
Sbjct: 645 SGMV 648


>gi|110005217|emb|CAK99543.1| probable dna polymerase III alpha chain transmembrane protein
            [Spiroplasma citri]
          Length = 1014

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/1029 (30%), Positives = 509/1029 (49%), Gaps = 73/1029 (7%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL V +SYSLL   ++ +            ++AI D NN+F   EF Q      I+PIIG
Sbjct: 5    HLNVRTSYSLLSSLITFDKYFTYAMTTGLLSLAICD-NNMFGVYEFHQLCQKNKIKPIIG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              + I   D                ++ L     +GY  L+E+ S + +  + K++V + 
Sbjct: 64   LNVIIWFND-------------IPYNMNLFARNQKGYFNLVEISSLVMINTENKKNVTLD 110

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
                          ++   +  +     + +     +   T K L      + L  + G 
Sbjct: 111  E-------------ISKFLTTDVKIIINYTTDDYQPELYQTLKSLLKVETDLYLGINNGN 157

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
                ES    LA      ++  N   + + ED+ A+ V+  +   T+  +          
Sbjct: 158  LSLLESLQTLLASEQ---IIWNNKVQYFTSEDFIAYKVVDTIKTQTLFKE---------- 204

Query: 253  YLKNRSEMVSIF------SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 S+M  ++      S   +  +N        +    +H   +   + +      + 
Sbjct: 205  -----SKMKDLYGWVSPPSYYQQYFDNIKTFITGINV-FPLHKGTIFDNLLRYPTPEGQT 258

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L+      L+ +    +         Y +RL++EL VI +M F+ YFLIV D++++
Sbjct: 259  AQQFLQEICQTALKQKRISSSKT------TYLERLNYELTVINKMGFNDYFLIVWDYVRY 312

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+ NI VGPGRGS AGS+ +Y L IT IDP+ ++LLFERFLNP+R S+PD DIDF  D+
Sbjct: 313  AKQQNIFVGPGRGSAAGSLVSYLLDITTIDPITYNLLFERFLNPERKSLPDIDIDFEDDK 372

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+ V+ Y+  KYG E VA IITF ++  K A+RD+ R   +   + D++ K +P +  + 
Sbjct: 373  REMVVEYLFEKYGSEHVAHIITFQTIGMKMAIRDICRIFDIAIEEADKMSKAVPLEYNYH 432

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               +AI  +  F   +   P V       +K+ GL R   THAAG+V+  + L  ++P+ 
Sbjct: 433  -YEEAINSNPLFEIYQKKYPQV---FLHLKKIIGLPRQTGTHAAGVVLTQQRLQTIIPV- 487

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            ++  + +  TQ++M ++E+ G++K D LGL+ LT+L   +D + Q   VK+D++ +P +D
Sbjct: 488  KEGYNGIYQTQYSMNYLEELGILKMDLLGLRNLTILHDVIDNIYQETKVKLDVNTLPLND 547

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +TY LL    T GIFQLES GM + L  M PD +EDI+A  SLYRPGP DNI ++  RK
Sbjct: 548  RKTYQLLAQGDTKGIFQLESPGMTKVLVDMAPDQLEDIVATSSLYRPGPQDNIPLFIKRK 607

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
                K+  I   +  +L  T G+I+YQEQVM IAQ ++ +SL++ADVLRRAMGKK    M
Sbjct: 608  KKLAKVTYIDERLAEILAPTYGIIVYQEQVMLIAQKVANFSLAKADVLRRAMGKKDASIM 667

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             + K  FI  A KN   + IA  I+EL+ KFA YGFN+SHA AY+++ YQ A++K +Y  
Sbjct: 668  SQMKTEFIEEAVKNHYVEKIAQEIWELIYKFAAYGFNRSHAVAYSLLGYQMAYLKANYSS 727

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            +FLA+ +T  + +  K   +   A++ ++ I+PP++N P   +   DN+I   L  IK +
Sbjct: 728  QFLASLLTHVIGDEHKTNDYIALAKKNHLTIVPPNINAPYRQYHTIDNQICVPLLIIKQI 787

Query: 846  GTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            G      I +    +     L D   R+  K LNR+  E+L F+GALD F  +R+ L  +
Sbjct: 788  GFAFFNKIAQEYQTNGMLTDLYDLFIRLYKKGLNRKTYEALCFSGALDVFKMNRITLFNN 847

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
               I  Y + ++    N  EN+          ++ +E     +  +  E E   LGFY S
Sbjct: 848  YQRILTYIELIKTQEEN--ENLVVDFSLAEKPELVIEPN---DEVICLEKEYEFLGFYLS 902

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
             HPL   +             ++    G+ N+ +  +V   +    +  +++ ++   + 
Sbjct: 903  NHPLKYIREKAGYQDKTTLISNLRLSLGSTNVLI--LVKRLKIITDKNNNKMAFLDCYDE 960

Query: 1024 AKEYEANFF 1032
            + E     F
Sbjct: 961  SGEISITAF 969


>gi|227496030|ref|ZP_03926341.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226834423|gb|EEH66806.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 1110

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/1100 (26%), Positives = 472/1100 (42%), Gaps = 125/1100 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L  HS+YS L+GA    ++    A     A+A+TD + +   +  +Q   A G+  
Sbjct: 5    SYAELHSHSAYSFLDGANEPEDLAAAAAELGLTALALTDHDGMPGIVRHAQAGRALGLPT 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + G +L +                     + +L  + EGY+ L+  +S+  L    +Q  
Sbjct: 65   VHGTELTMSDG----------------AHLPVLARSPEGYRHLVSAISQHNLQAGRRQEP 108

Query: 130  RICLSWLQEIGTEG--------LIMLTGGSSGPIDRA------FFFNSSQVAEKRLLTFK 175
               L  L +    G         ++LTG + GP+ RA           +Q A+  L    
Sbjct: 109  AHRLEDLAQALRGGTGMAAPSSCLVLTGTARGPLRRALGDPARPHTWDTQAADICLGRMV 168

Query: 176  KLF-GDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +L   D + V +  + G      ++++ +LA +H LP++AT         D    DVL A
Sbjct: 169  ELLGADGVAVEITLNGGPTDAALTRMLTRLAASHRLPVLATGAVRCARPADSRLADVLTA 228

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
                T +            +L++ +EM  +    P+A+  T E+A   +F L + AP LP
Sbjct: 229  TRLGTDLEGARGHLPAIGRWLRSGAEMARLHRRAPQAVGVTAELAADLAFDLALVAPDLP 288

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
                           + LR     G  +R                Q LD EL VI  + F
Sbjct: 289  AAQVPPG----HTPASWLRELTRQGALLRYGT-----REQDPHAWQVLDHELEVIESLGF 339

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFLIV   +++ +++ I +  GRGS A S   YAL IT +D +R  +LFERFL+P R 
Sbjct: 340  PGYFLIVRSIVEFCEESGI-LCQGRGSAANSAVCYALGITAVDAVRHKMLFERFLSPGRA 398

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D+D    RR+EVI++V  +YG  R AQ+    S + ++A+RD  RAL  P    D
Sbjct: 399  GYPDIDLDIEACRREEVIQHVYTRYGRHRAAQVANVISYRPRSAVRDAARALGYPAGLQD 458

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
               + I +  +     QA             D   +++L+++ +L  L RH   H+ G+V
Sbjct: 459  AWARSIEHGWSREQDGQA-----------REDAVPEQVLDVADRLLRLPRHLGVHSGGMV 507

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            +  +P++++ P+         V Q++      AGL+KFD LGL  LT L+ +   L  RG
Sbjct: 508  LAAQPVTEVCPVRWAAMEGRSVLQWDKDDCAAAGLVKFDLLGLGMLTALRLAFTSLGDRG 567

Query: 594  V---------------------KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
                                     L  +P +D   Y LL    T+G+FQ+ES      L
Sbjct: 568  EKVPDLTSRQGDGILRPAQVGRPWGLHTLPEEDPAVYRLLQAADTIGVFQVESRAQMATL 627

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
              ++P    DI+  V+L RPGPI    +  Y  R+ G+E+   +H L+ P L++T GV +
Sbjct: 628  PRLRPRVFYDIVVEVALIRPGPIQGDAVNPYIRRRLGREEPDYLHDLLRPALEKTLGVPL 687

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +QEQ+MQIA   +G+S  EAD LR+AM  K+  E M+    R + G  + GIS+  A  +
Sbjct: 688  FQEQLMQIAVDAAGFSPVEADALRQAMGAKRSVERMEALHLRLVEGMKERGISQGTAELV 747

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            F+ L  FAD+GF +SHA ++A + Y +AW+K   P +F A  +  +       +    DA
Sbjct: 748  FDKLRAFADFGFPESHAFSFAYLVYASAWLKVRRPEDFYAGVLAAQPMGFWSPQTLVADA 807

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRI------------------------------YYSL 839
            R+  +Q++   V+   V   V   R                                  L
Sbjct: 808  RRHGVQVLAADVSHSEVQASVETVRPGAPSQACVGGAGEEASTALTHLDTHRDLAVRLGL 867

Query: 840  AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            A IKG+G   A  I+ E  +   +  + D   RV      R+ LE+L  AGAL   G SR
Sbjct: 868  APIKGIGRELAERIVTERQSHGAYRDVADLARRVRL---GRKHLETLAAAGALASLGVSR 924

Query: 899  MQLLQSLD-NIQKYAQWVEKNRTNK------HENIFAHEKGTFSDKITLEKFSVENSSVR 951
             Q L S      ++ +    +RT           +     G+ +           ++  R
Sbjct: 925  RQALWSAGVLADEHGRPHLGHRTGGDRTPWCQPPLPGTAVGSRA-----PDLPEMSAQER 979

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               + R+ G     HPL   +  L + G+           G  +R+A +V  +Q+  T  
Sbjct: 980  HVADLRLTGVSTETHPLAFLRTALAEDGVVEVVRVGQQGNGAQVRVAGVVTHRQRPYTAA 1039

Query: 1012 GSRIGWVTFSEPAKEYEANF 1031
            G+   ++   +         
Sbjct: 1040 GT--VFLNIEDETGLLNVIC 1057


>gi|256788653|ref|ZP_05527084.1| DNA polymerase III, alpha chain [Streptomyces lividans TK24]
 gi|289772548|ref|ZP_06531926.1| DNA polymerase subunit III [Streptomyces lividans TK24]
 gi|289702747|gb|EFD70176.1| DNA polymerase subunit III [Streptomyces lividans TK24]
          Length = 1185

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1076 (25%), Positives = 463/1076 (43%), Gaps = 84/1076 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL   S +S   GA     + ++       A+A+TD + L  A+ F++    AG++
Sbjct: 2    PGFTHLHTVSGFSARYGASHPERLAERAFERGMDALALTDRDTLAGAVRFAKACAKAGVR 61

Query: 69   PIIGCQLDIDMQDNLKMTN---------------QGKTPFPTVPSIVLLVST-AEGYQRL 112
            P+ G +L +   ++                     G     + P +  L    A G+  L
Sbjct: 62   PLFGAELAVAAPESAAADRTETSVRRDRRRAPVRGGAFVDESAPRVTFLARDGARGWADL 121

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
              LVS  +  +         LSW  +   +GL +L G  S  + RA        A + L+
Sbjct: 122  CRLVSAAHTAEG-----SPLLSW-PDNHADGLTVLLGPDS-DVGRALAAGRPDRAARLLV 174

Query: 173  TFKKLFGDRLYVNLQRHR----GYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEA 227
             +++++GD L +    H     G    R + + V  A    +  V +N   +      E 
Sbjct: 175  PWREVYGDALRLEAVWHGRTGIGPGSLRLAARTVGFAAEQGVRPVLSNAVRYADPGQGEV 234

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-----------ALENTVE 276
             DVL A     V     +   + + +LK+   M      + E            LE T  
Sbjct: 235  ADVLDAAR-RLVPIDATKELDSGEAWLKDAGAMRHAAERIVESAGFRRDTAHRLLEQTRA 293

Query: 277  IARRCSFILQVHAPIL-PRFIEKECDDI-QKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
             A  C    +    +    F E       ++  +  L ++A AG+  R       +    
Sbjct: 294  TAAECLVDPEDDLGMGAVHFPEPHLVGAGRRTAQRALASRAAAGMVRR----GYDRRRDH 349

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
            ++Y +R+  EL++IA   F+ YFL VA  +   +   I V   RGSGAGS+  + L I  
Sbjct: 350  REYWERMHHELDIIAHHGFASYFLTVAQVVDDVRHMGIRVA-ARGSGAGSLVNHLLGIAH 408

Query: 395  IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
             DP+   LL ERFL+ +R+ +PD DID    RR EV R +  ++G ERVA +    + + 
Sbjct: 409  ADPVEHGLLMERFLSKERVVLPDIDIDVESARRLEVYRAIIGRFGTERVATVAMPETYRV 468

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDR 510
            + A+RDVG AL M  +++DR+ K  P+  A                A  +         R
Sbjct: 469  RHAIRDVGAALSMDPAEIDRVAKSFPHIRARDARAALEELPELKELAGESRRDGGGRYGR 528

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            L E+ + L+ L R  + H  G+++ D  L    P+       LP+ QF+   +E  GL+K
Sbjct: 529  LWELVEGLDALPRGVAMHPCGVLLSDASLLSRTPVVPTSGEGLPMAQFDKDDVEDLGLLK 588

Query: 571  FDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             D LG++  + +  ++  + +  G ++DL  +P  D  TY ++ +  TLG FQ+ES G R
Sbjct: 589  LDVLGVRMQSAMAHAVAEVKRATGTEIDLDAVPEGDPATYRMIRSAETLGCFQIESPGQR 648

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
              +  +QP    D++  +SL+RPGP+  D +  +   ++G+  +   H  +   L  T G
Sbjct: 649  DLVGRLQPATFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRHPHEDLAEPLAGTYG 708

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            V+++ EQ++ I  +++G    EAD +RR +     E   + K  F   A+ NG       
Sbjct: 709  VVVFHEQIIDIVAIMTGCGRGEADRVRRGLS--DPESQGRIKVWFAQHATANGYDAETIQ 766

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
              +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    
Sbjct: 767  RTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLA 825

Query: 808  DARQFNIQIMPPSVNTPCVDFKVG-----------DNRIYYSLAAIKGVGTTTARHIMEA 856
            DAR+  + I+P  VN   V  ++               +  +L+ + G+    A  I   
Sbjct: 826  DARRRGVPILPLDVNESGVAHRIELVSESGSRKPATWGLRLALSDVHGISEAEAERIA-- 883

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
               +P+ SL DF  R    + +R +   L   GALD FG +R  L   L  + + A+   
Sbjct: 884  -TGQPYASLLDFWERA---RPSRPLAGRLAQVGALDAFGANRRDLQLHLTELHRGAR--- 936

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                    +      G  +    L   + E    +   E  VL    S + +D ++  LR
Sbjct: 937  ----GGRGDQLPLTGGRKTASAGLPDLTSE---EKLSAELGVLSMDASRNLMDDHRTFLR 989

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++G+   +       G  + +A    + Q    R G R+ + T  + +   +  FF
Sbjct: 990  ELGVVSAKRLREARHGETVLVAGAKAATQTPPVRSGRRVIFSTLDDGSGLVDLAFF 1045


>gi|76363557|sp|P0C0F2|DPO3A_STRPY RecName: Full=DNA polymerase III subunit alpha
 gi|9789551|gb|AAF98350.1| DNA polymerase III alpha subunit [Streptococcus pyogenes]
          Length = 1034

 Score =  705 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/1026 (28%), Positives = 505/1026 (49%), Gaps = 104/1026 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEIEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +  +   EG+ ++                            K + D L V    + 
Sbjct: 102  LHMDYFCQ-HLEGIAVIIP-------------------------SKGWSDTLVVPFDYYM 135

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D+Y +   +  +    +PL       + +++D E   +L A+  +  +++   P V  
Sbjct: 136  GVDQYTDLSHMD-SKRQLIPL---RTVRYFAQDDMETLHMLHAIRDNLSLAET--PVVES 189

Query: 251  DHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            D  L +  ++ + +    P+AL+N  ++     +    +   LP F      +  K  + 
Sbjct: 190  DQELADCQQLTAFYQTHCPQALQNLEDLVSGIYYDFDTNL-KLPHF------NRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL++   AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQDLTEAGLKE--------KGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +     A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFG--QAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 409

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 410  TVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDALTNHIPL--KS 467

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+      D++ I  +D +T
Sbjct: 468  GDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDITAIDLEDPQT 527

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 528  LALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQ 587

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K 
Sbjct: 588  EKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKM 647

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 648  EEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 707

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M     +      +  DA + + Q+   ++N+     K+  ++IY  L  IKG+   
Sbjct: 708  DIMMNYSSSD------YITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRD 761

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E    +PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +LD +
Sbjct: 762  FAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNLDGL 818

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +         N+  ++F+    ++ D          + + ++  EQ ++G   S HPL
Sbjct: 819  LVFV--------NELGSLFSDSSFSWVDT------KDYSVTEKYSLEQEIVGVGMSKHPL 864

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++ +   +   + S +  +T+  G ++ +++ ++  K+ 
Sbjct: 865  ----IDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKL 920

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 921  DVTLFP 926


>gi|167561429|ref|ZP_02354345.1| error-prone DNA polymerase [Burkholderia oklahomensis EO147]
          Length = 837

 Score =  705 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/835 (28%), Positives = 382/835 (45%), Gaps = 32/835 (3%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S + ++++  A     IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSADELVERAKAHGYRGIAITDECSLAGAPRMHVAANAKGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G   D+   D       G  P P    +VLL    EGY  L EL+S    +D  K +
Sbjct: 69  LVVGAYFDVTPDD----VAPGHDPGPGAFGLVLLARNREGYGNLSELISW-RRMDAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            R+    L    +    +        I    +   + + + +L  F  LFG+R  + L Q
Sbjct: 124 YRLTPRMLAAPPSTFAHLRGVPDCFAILVPTYPARADMLDAQLAWFDALFGERARLGLVQ 183

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D     ++        + +VA  +    +       D + A+     +++     
Sbjct: 184 LQRALDGAHREEIRAAGERRGMRIVALGDVTMHARSCKPLQDAMTAIRLGMPIAECGYAL 243

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L+ R  +  +F    EA+  T  I   C F L       PR +  E       
Sbjct: 244 APNAEQHLRLRQRIAQLFP--AEAIAETCRILDACDFSLDELRYEYPRELVPEG----HT 297

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + LR +  +G   R   G           ++R+ +EL +IA +K+  YFL V D +Q+
Sbjct: 298 PTSYLRRETWSGAHRRYPDGV------PDTVQERIRYELELIAELKYEPYFLTVYDIVQY 351

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A+  +I +  GRGS A SV  + L +T++ P + SLLFERF++ +R   PD D+DF   R
Sbjct: 352 ARSRDI-LCQGRGSAANSVVCFCLGVTEVHPEKSSLLFERFISRERGEPPDIDVDFEHQR 410

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 411 REEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 470

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             L                P +    E++ +L G  RH S H+ G VI    L++LVP+ 
Sbjct: 471 DLLARFESVG----LDPDTPLIRAWAELAARLLGFPRHLSQHSGGFVISRGKLTRLVPVE 526

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDLSLI 601
                   V Q++   +E  GL+K D L L  L+ L ++ D +      + G    +  I
Sbjct: 527 NAAMEGRRVIQWDKNDLEALGLMKVDVLALGMLSALHRAFDMITAWRGRRDGQPFGMESI 586

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--V 659
           P DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI      
Sbjct: 587 PQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRDYYDLVIEVAIVRPGPIQGGAVH 646

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            Y  R+ G E +      + P L+ T+GV I+QEQVMQIA + +G++  EAD LRRAM  
Sbjct: 647 PYLKRRQGLEPVTYPKDDLKPALERTRGVPIFQEQVMQIAIIAAGFTPGEADALRRAMAA 706

Query: 720 -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K K  +++ + + + G  +       A  IFE +  F +YGF +SHAA++A + Y ++W
Sbjct: 707 WKRKGNLEQYRRKIVDGMRERDYPPEFAEQIFEQIKGFGEYGFPESHAASFAHLVYASSW 766

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
           +K H P  F+AA +  +        +  QDA++  + ++P        D  +   
Sbjct: 767 LKCHEPAIFVAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATASGWDASLEAQ 821


>gi|319744957|gb|EFV97287.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            agalactiae ATCC 13813]
          Length = 1034

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1028 (29%), Positives = 482/1028 (46%), Gaps = 108/1028 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   + K  +     I I D +NL++A  F Q+A  A ++PI
Sbjct: 2    FAQLDTRTVYSFMDSLVDLKTYVSKSKSLGYQTIGILDHSNLYAAYHFIQEAQKANLRPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G   DI +++                 I  +     GY+ L++L +            +
Sbjct: 62   VGFSFDIVVENR-------------SIEIYCIAINTVGYKNLLKLSTAQMSE-------K 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L+ L E   EG+                        + +L ++           Q + 
Sbjct: 102  MSLNLLTE-HLEGV------------------------QLILPYQDALD-------QLNL 129

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             +D      +      +  P++A +   +  + D E   +L A+  + ++  KD    + 
Sbjct: 130  PFDYVIGVNLTSPQIPYTKPIIAIDTVRYFQKNDIETLQMLHAIRDNVLL--KDAQYASK 187

Query: 251  DHYLKNRSEMVSIF-SDLPEALENTVEIARRC--SFILQVHAPILPRFIEKECDDIQKEE 307
            +  LK   EM   F    PEAL N   +       F      PI  R I           
Sbjct: 188  NQELKPCQEMTLAFKERFPEALANLESLVENVTYHFDSDFKLPIFNREIP---------A 238

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              ELR      L+        +KG  +  Y++RL+ EL +I +M F  YFLIV D +++ 
Sbjct: 239  GEELRTLTQNNLK--------SKGLWSDAYQERLEKELTIIHKMGFDDYFLIVWDLLRFG 290

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     +G GRGS AGS+ +YAL IT IDP++ +L+FERFLN +R SMPD DID     R
Sbjct: 291  RSKGYYMGMGRGSAAGSLVSYALNITGIDPVKHNLIFERFLNEERYSMPDIDIDLPDIYR 350

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E +RYV+N+YG    AQI+TF +  AK A+RDV +       ++  + K I        
Sbjct: 351  GEFLRYVRNRYGSMHSAQIVTFSTFGAKQAIRDVFKRFGASEYELTNITKKIHFRDNLT- 409

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                   +  FR+   +     +  +I++++EG  R  S HAAG+V+ D  L+  +P+  
Sbjct: 410  --SVYNRNLAFRQIIDSKIEYQKAYDIAKRIEGNPRQTSIHAAGVVMSDDLLTDHIPLKN 467

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + + +   + + L  I  +D 
Sbjct: 468  --GEDMMITQYDASSVEANGLLKMDFLGLRNLTFVQKMKEKVDKDYGISIQLETIDLEDK 525

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ET  L     T GIFQ E SG    L  ++P+C ED++A  SL RPG  D    + NR+ 
Sbjct: 526  ETLKLFAAGQTKGIFQFEQSGAINLLRRIRPECFEDVVATTSLNRPGASDYTENFINRRF 585

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GKEKI  + P+I P+L+ T G+++YQEQVMQIAQ  +G++L ++D+LRRAM KK  +EM 
Sbjct: 586  GKEKIDLVDPVIAPILQPTYGIMLYQEQVMQIAQTYAGFTLGKSDLLRRAMSKKNSKEMQ 645

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K  + F+ GA   G  +  A  IFE +AKFA YGFN+SHA AY+ +++Q A+ K HY   
Sbjct: 646  KMAQSFLEGAVAKGHRQEDARLIFERMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYSDV 705

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F    +     +      +  DA  F   I  PS+NT     ++   +IY  L  IK V 
Sbjct: 706  FYDIMINYSNSD------YLIDAIDFGFVIEKPSINTISYRDRIYKKKIYLGLKNIKAVP 759

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I   S ++PF S+EDF  R+  +      +  L+  GA D F  +R ++  +LD
Sbjct: 760  NDLAYWI---SKNQPFQSIEDFLMRLPQQFQKSGFISPLIAIGAFDEFDNNRRKITSNLD 816

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
            ++  +         N+  ++FA     +       +    ++S ++E EQ +LG   S H
Sbjct: 817  SLFTFV--------NELGSLFADTSYHWL------EVEDFSNSEKYEMEQDILGVGISPH 862

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAK 1025
            PL      + +   + +         +   +   +   +  +T+  G ++ ++T  +   
Sbjct: 863  PLVG----ISQKASRPFIPISQVQENSEATILVQLKQVKVIRTKSSGQQMAFLTVMDINS 918

Query: 1026 EYEANFFP 1033
            + +   FP
Sbjct: 919  KMDITVFP 926


>gi|241889100|ref|ZP_04776404.1| DNA polymerase III subunit alpha [Gemella haemolysans ATCC 10379]
 gi|241864349|gb|EER68727.1| DNA polymerase III subunit alpha [Gemella haemolysans ATCC 10379]
          Length = 1089

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/1036 (29%), Positives = 535/1036 (51%), Gaps = 78/1036 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            + ++QVHS+Y LL   +   ++  K+A D Q ++ I D  N++ A++  + +   GI  I
Sbjct: 2    YYNMQVHSAYDLLNSTIKYESLFSKLAKDNQKSVVIVDP-NMYGAIKAYKASKKVGINLI 60

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G ++++     L   N             LL  T + + +L+E+ ++   ++  + +V 
Sbjct: 61   QGLEVNLGYGIGLLKFN-------------LLCKTEKMFYKLLEISTK--FMNGEEWTVE 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               + + +   + ++ +       ++ ++  N        L  +   FG      +  + 
Sbjct: 106  DFANDMIDYREDFVLTVVDELRDSMEFSYLKN-------LLSKYDFYFGFNESFQVGLYS 158

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             YD                 +V T  S +L++E Y+   V  A+  +  ++ +    ++ 
Sbjct: 159  DYD----------------NIVYTKPSFYLNKEHYQQVIVSRAIRDNKKLNIQGLTTISG 202

Query: 251  DHYL---KNRSEMV-----SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            D ++   K+  E++      +++   ++  N   I   C + L      LP++I  E ++
Sbjct: 203  DDFVREKKDFEEILALGDEELYAIFEKSFANQKLIIDSCEYELNFSGYHLPKYIYGEKEE 262

Query: 303  IQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            I +    +  L      G++ +L       G     Y++R  +EL +I  M F+ YFLIV
Sbjct: 263  IFEKLSSKEYLHYLVQKGVKEKLI------GKDLYQYQKRYSYELKIIDEMGFNDYFLIV 316

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DF+++AK N I VG GRGS AGS+  Y L IT+ DPL ++LLFERFLN +R+SMPD DI
Sbjct: 317  YDFVKYAKDNGILVGAGRGSAAGSLVCYLLDITEADPLEYNLLFERFLNKERISMPDIDI 376

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RRDEVI+YV+ KYG ++VAQIITF + Q+K+A R+  R LQ     +    K I 
Sbjct: 377  DFQDTRRDEVIKYVEEKYGSDKVAQIITFTTFQSKSAARESARILQFDEQTL----KFIS 432

Query: 481  NDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR-P 538
            ++ +   +L+   +     R          R   I+  LE L ++ S HAAGIVI D  P
Sbjct: 433  SNISSTRTLKECYEISEELRTFINTSNINKRWFSIALSLEHLPKNPSVHAAGIVISDDKP 492

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            L    P+     +   +TQ+ M  +E  GL+K DFLG++ LT++   ++ + +     D+
Sbjct: 493  LVNYTPLAESNMTKY-LTQWTMDDVESVGLLKIDFLGIRYLTMVSSIVEEIRKENPAFDI 551

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + I + D + Y L     T GIFQ ESSGM++ L  ++P    DI+A+ +LYRPGP+  I
Sbjct: 552  TKINYQDPKVYELFAKGKTEGIFQFESSGMKEKLNLLKPTEFNDIVAMNALYRPGPMAQI 611

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             VY  RKN +E+++  HP ++ +LK+T GVI+YQEQ+M IA   +  SL+EAD +RRA+ 
Sbjct: 612  EVYVRRKNKEEQVIYPHPHLEKILKDTYGVIVYQEQIMLIAVNFAHMSLNEADNMRRAVS 671

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK KE+++     F+  +   G    +A  +F+L+  FA+YGFNKSHA  Y++++Y+ A+
Sbjct: 672  KKKKEDLEYYGRIFVEKSVAAGYDIKVAEKLFDLIVTFANYGFNKSHAVVYSMLAYRLAY 731

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +Y   F+ A +   + + +KI ++ Q+     I ++ P VN    +F+V  N I ++
Sbjct: 732  LKVYYTKHFMTALLNNVISSEKKINEYKQELMNLGINLVKPDVNRSLANFRVFKNDIVFA 791

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIK VG  +   I++   +  P+  ++DF  R++ KK++ +   SLV AGALD FGY+
Sbjct: 792  LTAIKNVGYRSGYEIVQDRINFGPYLDIDDFLKRMN-KKVDYQAAVSLVKAGALDTFGYN 850

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  L++ +++     +    N         + E G     + +E+    + + + + E+ 
Sbjct: 851  RATLMKKVNDYYSDNRQFINNVRVA----LSAESGL---TLKVEEIEDYSITEKIQMEKE 903

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            V G YF  HP+ V K    K      +     +  + +     ++++++ +T+ G  + +
Sbjct: 904  VTGTYFLKHPVQVEKE---KYSYLPLQYIGGEVSDSYVE----IITRKEIRTKNGDYMAF 956

Query: 1018 VTFSEPAKEYEANFFP 1033
            +T ++   +Y+   FP
Sbjct: 957  LTVNDGKNDYDVTVFP 972


>gi|227502752|ref|ZP_03932801.1| error-prone DNA polymerase [Corynebacterium accolens ATCC 49725]
 gi|227076482|gb|EEI14445.1| error-prone DNA polymerase [Corynebacterium accolens ATCC 49725]
          Length = 1039

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/1037 (25%), Positives = 435/1037 (41%), Gaps = 98/1037 (9%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q    +  F  L   SSYS L+GA     ++ +        +A+ D +  +  ++F++ 
Sbjct: 39   VQRWHSAVPFAELHAVSSYSFLDGAAEPEELVARALELGLEGLAVVDRDGFYGLMKFAEA 98

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A  AG+  +                  G         + +L  T EGY+RL  L++R  +
Sbjct: 99   AAKAGLPAMY-----------------GAELSLAEAPVTVLARTPEGYRRLSRLIARARM 141

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-FKKLFGD 180
                K SV      L  +               ++   FF     A +++    +++  D
Sbjct: 142  DAGEKGSVAYPP--LDAVAR------------ELEEECFFLLGWEAIQKIDHVLERIKID 187

Query: 181  RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             + +        +       +           A   +    +    A    +A   S   
Sbjct: 188  SIVLEYACTMSPEDADHHGFLDKYNNLRAIATARPAAATRDQVRLAAAKRALAHRQSLEE 247

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            +  D   +    ++++  +M  +    PE +  TV +AR CSF     AP LP F+  E 
Sbjct: 248  AAPDAHPMGAG-WMRSGEQMAQLLPGRPELIAETVHLARECSFTWGALAPNLPDFVVPEG 306

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                  E + L ++     + R A         A   ++++  EL +I ++ F GYFLIV
Sbjct: 307  ----HTEMSWLEHEVWRRGKKRYASRPPEIQARA---KKQMRHELGIIKQLGFPGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + + ++ NI +  GRGS A S   +AL IT+ +P+   LLFERFL+PDR   PD DI
Sbjct: 360  CDLVDFCRQENI-LCQGRGSAANSAVCFALGITNAEPISAQLLFERFLSPDRDGPPDIDI 418

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D    RR+EVI+YV   +G +R AQ+    + + K A RD  RAL  P    D   K I 
Sbjct: 419  DIESGRREEVIQYVYRTHGRDRAAQVANVITYRRKGATRDAARALGYPQGSADAWSKGIA 478

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              PA  VSL                        ++++     RH   H+ G+V+ DRP++
Sbjct: 479  ELPA-DVSL------------------------LAEQFLDQPRHLGIHSGGMVLCDRPIA 513

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
             +VPM         V Q++      AGL+KFD LGL  L  L   +D +      +V L 
Sbjct: 514  DVVPMEWARMEGRSVLQWDKDDCAAAGLVKFDLLGLGMLEALHHMIDAVRATTGREVRLW 573

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
             +   +   Y +L     +G+FQ+ES      L  ++P C  D++  V+L RPGPI    
Sbjct: 574  ELDLAEPAVYDMLCRADAVGVFQVESRAQLATLPRLKPRCFFDLVVEVALIRPGPIQGGS 633

Query: 659  -VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
               Y  R++G E +   HP+++  L +T G+ ++QEQ+MQIA   +G++ +EAD LRRAM
Sbjct: 634  VHPYLRRRDGLEPVTYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFTGAEADDLRRAM 693

Query: 718  -GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
              K+   +M   + RF  G    NGI   +A  ++  +  FA YGF +SH+ ++A + Y 
Sbjct: 694  GSKRSPAKMAALRSRFFEGLRATNGIDGEVAEKLWAKITAFAAYGFPESHSQSFASLVYF 753

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNR 834
            +AW K HYP EF    +  +       +   QDAR+  ++++P S+N      + +    
Sbjct: 754  SAWFKHHYPAEFCVGLLRAQPMGFYSPQSLIQDARRHGVRVLPLSINDSGAQARALPTGE 813

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I   L  IKG+G   A  +  A+   PF S+ D   R D    +   +E+L  AGAL+C 
Sbjct: 814  IRLGLNLIKGLGDKAAERVEAAA---PFSSVSDLSRRADL---SVEQVEALATAGALECL 867

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            G  R Q L                   + E +        S           ++      
Sbjct: 868  GLERRQALWQAGVA-----------ATEREGMLPGTSALAS-----PHLPGMSAFELMAT 911

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +    G      P+++ +  L    +           G  +R+A ++  +Q+ +T  G  
Sbjct: 912  DVAATGVTHDKQPMELVRAALG--DVLPSSHLPHVPDGTRVRIAGIITHRQRPRTASGLT 969

Query: 1015 IGWVTFSEPAKEYEANF 1031
              ++   +         
Sbjct: 970  --FLGVEDETGLMNVMV 984


>gi|84502808|ref|ZP_01000921.1| DNA polymerase III, alpha subunit [Oceanicola batsensis HTCC2597]
 gi|84388791|gb|EAQ01661.1| DNA polymerase III, alpha subunit [Oceanicola batsensis HTCC2597]
          Length = 975

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/1009 (24%), Positives = 421/1009 (41%), Gaps = 63/1009 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F  +   S+++ L GA      + +       A+AI D N++   +   QKA        
Sbjct: 2   FSEISATSNFTFLTGASHPEEYMARAEQLGLEAVAIADENSVAGIVRAHQKAREIARAIR 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS--------------TAEGYQRLIELV 116
                +        +      P P  P ++                  T  G+ RL  L+
Sbjct: 62  DREAWEATHGPMGPLKPGHVPPRPKAPRLIPAARLVLSDGMEITALPETRIGWARLCRLI 121

Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
           SR  L    +     CL  ++++   G+  L               +     KR     +
Sbjct: 122 SRGRL----RAPKGDCLLHIEDLLDNGMEALRLVLHPSRAITDPRGAGDW-PKRARRLTR 176

Query: 177 LFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG ++ + L   + G D+ R      +A    +  V +   +          DV+ A+ 
Sbjct: 177 RFGGQMSLALTPAYDGQDKARFDTHAAMAADLGIETVTSARPMMHHARRRRLADVMTAIR 236

Query: 236 HSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
            S  V    R  +   +  L+  +E+  +      A++ T+ +AR  +F L       P 
Sbjct: 237 TSRTVDALGRDALANGERRLRTGTELRRMLGPHAGAVDRTIRLARSLTFSLDELRYEYP- 295

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                     +     L   A  GL  R   GA  +       +  L+ EL +IA++K+ 
Sbjct: 296 ----SEVSGGETPSTRLARLARKGLAWRYPFGAPDR------VKAMLEHELALIAKLKYE 345

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFL V D + +A+  +I +  GRGS A SV  Y L +T + P   +++FERF++  R  
Sbjct: 346 PYFLTVHDVVAFARSRDI-LCQGRGSAANSVVCYCLGVTSVSPEIGTMVFERFVSEARDE 404

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            PD D+DF  +RR+EVI+++  +YG  R     T    + K A+R+VG A+ +    +  
Sbjct: 405 PPDIDVDFEHERREEVIQHIYERYGRHRAGLCATVIHYRGKRAIREVGAAMGLTQDTIGA 464

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGI 532
           L   +    A      A  +D R RE  L   DP + + + +  ++EG+ RH S H  G 
Sbjct: 465 LSSQLWGFFA-----AAGMEDQRMREIGLDPTDPRLRQTMALIHEIEGMPRHLSQHVGGF 519

Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQ 591
           ++ +  L +LVP+      D  V  ++   I+  G++K D L L  LT ++K+ D  +  
Sbjct: 520 IMTEGRLDELVPIENATMEDRTVICWDKDDIDTLGILKVDVLALGMLTCIRKAFDLLVRH 579

Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
              ++DL+ IP +D E Y +L    T+G+FQ+ES      L  M+P C  D++  V++ R
Sbjct: 580 ENTELDLATIPPEDPEVYDMLCKADTIGVFQVESRAQMNFLPRMRPRCFYDLVIEVAIIR 639

Query: 652 PGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
           PGPI  D +  Y  R+NG+E +      +  +L +T GV ++QEQ MQIA + +G++  E
Sbjct: 640 PGPIQGDMVHPYIRRRNGEETVEFPSDELGQVLGKTLGVPLFQEQAMQIAIIGAGFTPEE 699

Query: 710 ADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
           AD LRR++   K    + + + RF+ G ++NG     A   F  +  F  YGF +SHAA+
Sbjct: 700 ADRLRRSLATFKKHGNVSEFRSRFMRGMARNGYDADFADRCFSQIEGFGSYGFPESHAAS 759

Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
           +A++ Y ++W+K H+P  F  A +  +        +  +DAR   +++ P  +N    D 
Sbjct: 760 FALLVYASSWIKHHHPGIFACALLNSQPMGFYAPAQIVRDARDHGVEVRPVDINASHWDN 819

Query: 829 KVGDNRI----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +               IKGVG   A  I  A  +  + S+ D   R     +   ++E 
Sbjct: 820 IMEREGARLILRLGFRQIKGVGQEEADWISAARGNG-YHSVGDVWRRA---GVAPALIER 875

Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
           L  A A    G  R + +     +          R  K   +F  +              
Sbjct: 876 LAEADAFASLGLDRREAIWEAKAL----------RPGKPLPLFEGDMDGEGITEPAALLP 925

Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
                     +   +      HP+   + +L   G   ++++     G 
Sbjct: 926 EMTPGEAVVEDFVAMRLSLKAHPVAFLREVLTP-GYSAWQDAPEAGAGQ 973


>gi|167844169|ref|ZP_02469677.1| error-prone DNA polymerase [Burkholderia pseudomallei B7210]
          Length = 852

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/866 (28%), Positives = 389/866 (44%), Gaps = 49/866 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            R+    L         +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 124 YRLTPRMLAAPPRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLVQ 183

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D     QV        + +VA  +            D + A+     +++     
Sbjct: 184 LQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHAL 243

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 244 APNGEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----HT 297

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D +++
Sbjct: 298 STSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVKY 351

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   R
Sbjct: 352 ARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQR 410

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 411 REEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 470

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             L   A      E     P +    EI+ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 471 DLLARFASVGLDPEV----PLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVE 526

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                   V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 527 NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 586

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
            IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 587 RIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 646

Query: 659 -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 647 VHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 706

Query: 713 LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           LRRAM   K K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A 
Sbjct: 707 LRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAK 766

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
           ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 767 LAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASLE 826

Query: 831 ---------GDNRIYYSLAAIKGVGT 847
                    G   +   L+ ++G+G 
Sbjct: 827 AQPGAAPPDGRPAVRLGLSLVRGLGE 852


>gi|21220233|ref|NP_626012.1| DNA polymerase III subunit alpha [Streptomyces coelicolor A3(2)]
 gi|5531449|emb|CAB50954.1| putative DNA polymerase III, alpha chain [Streptomyces coelicolor
            A3(2)]
          Length = 1185

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/1076 (25%), Positives = 461/1076 (42%), Gaps = 84/1076 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL   S +S   GA     + ++       A+A+TD + L   + F++    AG++
Sbjct: 2    PGFTHLHTVSGFSARYGASHPERLAERAFERGMDALALTDRDTLAGTVRFAKACAKAGVR 61

Query: 69   PIIGCQLDIDMQDNLKMTN---------------QGKTPFPTVPSIVLLVST-AEGYQRL 112
            P+ G +L +   ++                     G     + P +  L    A G+  L
Sbjct: 62   PLFGAELAVAAPESAAADRTETSVRRDRRRAPVRGGAFVDESAPRVTFLARDGARGWADL 121

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
              LVS  +  +         LSW  +   +GL +L G  S  + RA        A + L+
Sbjct: 122  CRLVSAAHTAEG-----SPLLSW-PDNHADGLTVLLGPDS-DVGRALAAGRPDRAARLLV 174

Query: 173  TFKKLFGDRLYVNLQRHR----GYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEA 227
             +++++GD L +    H     G    R + + V  A    +  V +N   +      E 
Sbjct: 175  PWREVYGDALRLEAVWHGRTGIGPGSLRLAARTVGFAAEQGVRPVLSNAVRYADPGQGEV 234

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-----------ALENTVE 276
             DVL A      +        + + +LK+   M      + E            LE T  
Sbjct: 235  ADVLDAARRLVPIGATKELD-SGEAWLKDAGAMRHAAERIVESAGFRRDTAHRLLEQTRA 293

Query: 277  IARRCSFILQVHAPIL-PRFIEKECDDI-QKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
             A  C    +    +    F E       ++  +  L ++A AG+  R       +    
Sbjct: 294  TAAECLVDPEDDLGMGAVHFPEPHLVGAGRRTAQRALASRAAAGMVRR----GYDRRRDH 349

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
            ++Y +R+  EL++IA   F+ YFL VA  +   +   I V   RGSGAGS+  + L I  
Sbjct: 350  REYWERMHHELDIIAHHGFASYFLTVAQVVDDVRHMGIRVA-ARGSGAGSLVNHLLGIAH 408

Query: 395  IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
             DP+   LL ERFL+ +R+ +PD DID    RR EV R +  ++G ERVA +    + + 
Sbjct: 409  ADPVEHGLLMERFLSKERVVLPDIDIDVESARRLEVYRAIIGRFGTERVATVAMPETYRV 468

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDR 510
            + A+RDVG AL M  +++DR+ K  P+  A                A  +         R
Sbjct: 469  RHAIRDVGAALSMDPAEIDRVAKSFPHIRARDARAALEELPELKELAGESRRDGGGRYGR 528

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            L E+ + L+ L R  + H  G+++ D  L    P+       LP+ QF+   +E  GL+K
Sbjct: 529  LWELVEGLDALPRGVAMHPCGVLLSDASLLSRTPVVPTSGEGLPMAQFDKDDVEDLGLLK 588

Query: 571  FDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             D LG++  + +  ++  + +  G +VDL  +P  D  TY ++ +  TLG FQ+ES G R
Sbjct: 589  LDVLGVRMQSAMAHAVAEVKRATGTEVDLDAVPEGDPATYRMIRSAETLGCFQIESPGQR 648

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
              +  +QP    D++  +SL+RPGP+  D +  +   ++G+  +   H  +   L  T G
Sbjct: 649  DLVGRLQPATFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRHPHEDLAEPLAGTYG 708

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            V+++ EQ++ I  +++G    EAD +RR +     E   + K  F   A+ NG       
Sbjct: 709  VVVFHEQIIDIVAIMTGCGRGEADRVRRGLS--DPESQGRIKVWFAQHATANGYDAETIQ 766

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
              +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    
Sbjct: 767  RTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLA 825

Query: 808  DARQFNIQIMPPSVNTPCVDFKVG-----------DNRIYYSLAAIKGVGTTTARHIMEA 856
            DAR+  + I+P  VN   V  ++               +  +L+ + G+    A  I   
Sbjct: 826  DARRRGVPILPLDVNESGVAHRIELVSESGSRKPATWGLRLALSDVHGISEAEAERIA-- 883

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
               +P+ SL DF  R    + +R +   L   GALD FG +R  L   L  + + A+   
Sbjct: 884  -TGQPYASLLDFWERA---RPSRPLAGRLAQVGALDAFGANRRDLQLHLTELHRGAR--- 936

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                    +      G  +    L   + E    +   E  VL    S + +D ++  LR
Sbjct: 937  ----GGRGDQLPLTGGRKTASAGLPDLTSE---EKLSAELGVLSMDASRNLMDDHRTFLR 989

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++G+   +       G  + +A    + Q    R G R+ + T  + +   +  FF
Sbjct: 990  ELGVVSAKRLREARHGETVLVAGAKAATQTPPVRSGRRVIFSTLDDGSGLVDLAFF 1045


>gi|312882444|ref|ZP_07742185.1| error-prone DNA polymerase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369844|gb|EFP97355.1| error-prone DNA polymerase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 1023

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/1038 (25%), Positives = 452/1038 (43%), Gaps = 86/1038 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ- 68
            S+  L   +++S L GA     ++ +    +  ++AITD  ++   ++  +      +  
Sbjct: 2    SYAELFCQTNFSFLTGASHAEELILRADFLRYHSLAITDECSVAGVVKAYRTIKNHQLSV 61

Query: 69   -PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
              IIG    ++                    ++LL      Y  L  ++S      + K 
Sbjct: 62   DLIIGSMFWLNPH----------------CQVILLCPDKSAYAELCRIISNARRRSE-KG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            S ++   W        LI+            +    ++          +    RL++ +Q
Sbjct: 105  SYQLS-EWDLMSVRHCLII------------WLPQHNKEDHHWGTWLNRHHKTRLWLGIQ 151

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
            RH G D  R      +LA+   LP+ A    L  + +       L A+ H+  + +   R
Sbjct: 152  RHLGPDDKRYLEHSQKLAHEIALPITACGGVLMHTADRLPLQHTLSAIKHNCKIEELGER 211

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 +  L+++ ++  +F    E +  +  IA+ C F L       P  +  +      
Sbjct: 212  MLTNSERSLRSQEKLSKLFK--AEWMLESTHIAKLCKFNLDEIQYEYPSELVPK----DH 265

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + L+     G ++R  +G  A      D +  +D EL +I  + +  YFL + D + 
Sbjct: 266  TPISYLKYLVEQGKKIRFPEGISA------DIQHTIDKELALIEELNYPFYFLTIHDIVM 319

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK++ I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +
Sbjct: 320  FAKRSQILY-QGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERDEPPDIDVDFEHE 378

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG ER A   T  + + K+A+RDVGRAL +  SQ+D   + +      
Sbjct: 379  RREEVIQYIYKKYGRERAALAATVITYRFKSAIRDVGRALGIEASQLDFFIRNVDRRDRK 438

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                  I           +     + +E+  ++ G  RH S H  G VI   PL  LVP+
Sbjct: 439  QNWQAQIVALG----LEPSSLKGQQFIELVSRIIGFPRHLSQHVGGFVITSGPLYDLVPI 494

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA---QRGVKVDLSLIP 602
                  D  V Q++   +E   L+K D L L  LT ++K    +    +  + +      
Sbjct: 495  ENAAMPDRTVIQWDKDDLESLKLLKVDILALGMLTAIRKCFSLIKDLNKHTLSIADITRR 554

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
             DD + Y ++    T+G+FQ+ES      L  ++P    D++  +++ RPGPI  D +  
Sbjct: 555  QDDDDVYQMIQNADTVGVFQIESRAQMNMLPRLRPKTYYDLVIQIAIVRPGPIQGDMVHP 614

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            +  R+NG E++V     +  +L+ T GV I+QEQV++IA + +G+S  EAD LRRAM   
Sbjct: 615  FLKRRNGIEQVVYPSREVKDVLERTLGVPIFQEQVIKIAMVAAGFSGGEADQLRRAMAAW 674

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K   E+ K K + + G +K G S   A  +FE +  F +YGF +SH+A++AV++Y +AW+
Sbjct: 675  KKNGELIKFKTKLVDGMTKRGYSMEFAHQLFEQILGFGEYGFPESHSASFAVLAYCSAWL 734

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----RI 835
            K HYP  F A+ +           +  QDA++ N+ ++P  +NT   D++V  +     I
Sbjct: 735  KYHYPEAFYASLLNSLPMGFYSASQLVQDAKRHNVIVLPVCINTSTYDYQVVKHLNKLAI 794

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                  IKG    +A  I++    + F  +    ++V    LN++ +E L  A AL C  
Sbjct: 795  RLGFRQIKGFSRASANSIVQLRPSQGFTHI----NQVKQCHLNKKDIELLSSADALYCLN 850

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R Q    + +            +     +F H      ++ TL   +  +     E +
Sbjct: 851  QHRYQTRWDIMD------------STSDLPLFHH----LEEERTLSLAAPSDYQTLLE-D 893

Query: 956  QRVLGFYFSGHPLDVYKPILRKMG-IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
                G     HP+ +     + +G     +E       + + +  +V  KQ   T  G  
Sbjct: 894  YATTGLSLRHHPITLL-DQAKLIGRFTRMQELPYKNDQSLVTVVGVVTGKQSPGTASG-- 950

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + ++T  +         +
Sbjct: 951  VTFITLEDDTGNINVIVW 968


>gi|77408937|ref|ZP_00785660.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae COH1]
 gi|77172437|gb|EAO75583.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae COH1]
          Length = 1034

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1028 (28%), Positives = 482/1028 (46%), Gaps = 108/1028 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   + K  +     I I D +NL++A  F Q+A  A ++PI
Sbjct: 2    FAQLDTRTVYSFMDSLVDLKTYVSKSKSLGYQTIGILDHSNLYAAYHFIQEAQKANLRPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G   DI +++                 +  +     GY+ L++L +            +
Sbjct: 62   VGFSFDIVVENR-------------SIEVYCIAINTVGYKNLLKLSTAQMSE-------K 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L+ L E   EG+                        + +L ++           Q + 
Sbjct: 102  MSLNLLTE-HLEGV------------------------QLILPYQDALD-------QLNL 129

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             +D      +      +  P++A +   +  + D E   +L A+  + ++  KD    + 
Sbjct: 130  PFDYVIGVNLTSPQIPYTKPIIAIDTVRYFQKNDIETLQMLHAIRDNVLL--KDAQYASK 187

Query: 251  DHYLKNRSEMVSIFS-DLPEALENTVEIARRC--SFILQVHAPILPRFIEKECDDIQKEE 307
            +  LK   EM   F    PEAL N   +       F      PI  R I           
Sbjct: 188  NQELKPCQEMTLAFKKRFPEALANLESLVENVVYHFDSDFKLPIFNREIP---------A 238

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              ELR      L+        +KG  +  Y++RL+ EL +I +M F  YFLIV D +++ 
Sbjct: 239  GEELRTLTQNNLK--------SKGLWSDAYQERLEKELTIIHKMGFDDYFLIVWDLLRFG 290

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     +G GRGS AGS+ +YAL IT IDP++ +L+FERFLN +R SMPD DID     R
Sbjct: 291  RSKGYYMGMGRGSAAGSLVSYALNITGIDPVKHNLIFERFLNEERYSMPDIDIDLPDIYR 350

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E +RYV+N+YG    AQI+TF +  AK A+RDV +       ++  + K I        
Sbjct: 351  GEFLRYVRNRYGSMHSAQIVTFSTFGAKQAIRDVFKRFGASEYELTNITKKIHFRDNLT- 409

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                   +  FR+   +     +  +I++++EG  R  S HAAG+V+ D  L+  +P+  
Sbjct: 410  --SVYNRNLAFRQIIDSKIEYQKAYDIAKRIEGNPRQTSIHAAGVVMSDDLLTDHIPLKN 467

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + + +   + + L  I  +D 
Sbjct: 468  --GEDMMITQYDASSVEANGLLKMDFLGLRNLTFVQKMKEKVDKDYGISIQLEAIDLEDK 525

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ET  L     T GIFQ E SG    L  ++P+C ED++A  SL RPG  D    + NR+ 
Sbjct: 526  ETLKLFAAGQTKGIFQFEQSGAINLLRRIRPECFEDVVATTSLNRPGASDYTENFINRRF 585

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GKEKI  + P+I P+L+ T G+++YQEQVMQIAQ  +G++L ++D+LRRAM KK  +EM 
Sbjct: 586  GKEKIDLVDPVIAPILQPTYGIMLYQEQVMQIAQTYAGFTLGKSDLLRRAMSKKNSKEMQ 645

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K  + F+ GA   G  +  A  IFE +AKFA YGFN+SHA AY+ +++Q A+ K HY   
Sbjct: 646  KMSQSFLEGAVSKGHRQEDARLIFERMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYSDV 705

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F    +     +      +  DA  F   I  PS+NT     ++   +IY  L  IK V 
Sbjct: 706  FYDIMINYSNSD------YLIDAIDFGFVIEKPSINTISYRDRIYKKKIYLGLKNIKAVP 759

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I   S ++PF S+EDF  R+  +      +  L+  GA D F  +R ++  +LD
Sbjct: 760  NDLAYWI---SKNQPFQSIEDFLMRLPQQFQKSGFISPLIAIGAFDEFDNNRRKITSNLD 816

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
            ++  +         N+  ++FA     +       +    ++S ++E EQ +LG   S H
Sbjct: 817  SLFTFV--------NELGSLFADTSYHWL------EVEDFSNSEKYEMEQDILGVGISPH 862

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAK 1025
            PL      + +   + +         +   +   +   +  +T+  G ++ ++T  +   
Sbjct: 863  PLVG----ISQKASRPFIPISQVQENSEATILVQLKQVKIIRTKSSGQQMAFLTVMDINS 918

Query: 1026 EYEANFFP 1033
            + +   FP
Sbjct: 919  KMDITVFP 926


>gi|170696620|ref|ZP_02887740.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M]
 gi|170138486|gb|EDT06694.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M]
          Length = 1197

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/1122 (22%), Positives = 450/1122 (40%), Gaps = 121/1122 (10%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
               P++  L   +++S L GA   + ++++       A+AITD  +L   +         
Sbjct: 16   SNLPAYAELHCLTNFSFLRGASHPHELVERAMLHGYSALAITDECSLAGVVRAHTALKEI 75

Query: 66   G-------------IQPIIGCQLDIDMQDNLK-------MTNQGKTPFPTV--------- 96
            G             ++     +     ++ L        + N+   P P +         
Sbjct: 76   GEEQNRLRKEIEDKLKAARPPEAGPLPKEVLDEAIRQEALENEVLKPLPQLIIGSELNLT 135

Query: 97   -------PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE--IGTEGLIML 147
                    ++V L +   GY  L EL++      + K S R+  S   +     E L  L
Sbjct: 136  DAAGEPFCTLVALAANRNGYGNLSELITLGRSRAE-KGSYRLSPSDFTDSLPHLEHLRAL 194

Query: 148  TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYT 206
                   + +     +                +R ++ L+    G D  +   +  ++  
Sbjct: 195  PDCVLLLVPQRTA--TLSHILHCAHWLASFAANRAWIALELWQTGSDDLQIDALRMISQA 252

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFS 265
              LPLVA    L  +       D + A+  +T +S          + +++ R  +  ++ 
Sbjct: 253  SGLPLVAAGGVLMHTRSRKPLQDTMTAIGLNTPLSACGHALEANAERHMRTRVRLSKLYP 312

Query: 266  DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
               + LE T+ IA  C F L       P  +    +       + LR   +AG   R   
Sbjct: 313  R--DTLEETLNIAALCRFSLDELKYEYPEELVPAGE----SPSSYLRKLVMAGAAERWPN 366

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
            G   K         +++ EL++IA +K+  YFL V D + +A+  NI +  GRGS A S+
Sbjct: 367  GLDLKRI------DQIEKELSLIADLKYEKYFLTVHDIVSFARSRNI-LCQGRGSAANSI 419

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
              Y L +T+IDP+  ++L ERF++  R   PD D+DF   RR+EVI+Y+  KYG  R A 
Sbjct: 420  VCYCLHVTEIDPVHMNMLIERFISRARNEPPDIDVDFEHQRREEVIQYIYAKYGRHRAAL 479

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              +  +   ++AL+DVG+AL +  S ++R+ K            +A+A            
Sbjct: 480  TASLITYHVRSALKDVGKALGLEASLIERISKSQQWWDGS----EAVAGYLAEAGFDANS 535

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
                 L+ ++++L    RH S H  G VI    LS+LVP+      D  V +++   I+ 
Sbjct: 536  HITRNLIRLTKELRLFPRHLSQHVGGFVIAKDKLSRLVPIENATMKDRSVIEWDKDDIDA 595

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQR--GVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              L+K D L L  L+ ++++L+F+A R    +  +  IP +D   Y +     T+G+FQ+
Sbjct: 596  LKLLKVDVLALGMLSAIRRALEFVALRRGFPQFRVQDIPREDRAVYEMCGHADTVGVFQI 655

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPM 681
            ES   +  L  ++P+   D++  V++ RPGPI   +   Y  RK G E I      + P+
Sbjct: 656  ESRAQQSMLPRLKPNKYYDLVIEVAIVRPGPIQGGMVHPYLRRKQGLEPIDYAKDELRPV 715

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNG 740
            L+ T GV I+QEQVM +A + + Y+  +AD LRRAM   +    + K ++      S  G
Sbjct: 716  LERTLGVPIFQEQVMHLAMVAAKYTGEQADQLRRAMAAWRRTGNLAKYQKDLSDRMSARG 775

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
                    I + +  F +YGF +SHAA++A++ Y +AW+K + P  FLA  +  +     
Sbjct: 776  YEPEFIDRICQQIEGFGEYGFPESHAASFALLVYLSAWLKRYEPAAFLAGLLNSQPLGFY 835

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD---------------NRIYYSLAA---- 841
               +  QDAR+  ++++PP V     +                    +R    L+A    
Sbjct: 836  SPSQLVQDARRHGVKVLPPDVTLSDWESTFEKRDREGERIAPGETCLHRQQAVLSAQQLR 895

Query: 842  --------IKGVGTTTARHIMEA--------SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                    +       A+ +            A  P   +     +  ++    R++ + 
Sbjct: 896  DLSLRRLRVNRTIRRAAKRLTARVFQAPGTYGAHGPAVRIGLHLIKGLAQAAAERIMAAR 955

Query: 886  VFAGALDCFGYSRMQLL--------------QSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
              A   +    +R   L               S+   ++ A W    +    + +   + 
Sbjct: 956  RDAPFTNVDDLARRAALTRRDLEALAAANALTSIAGHRREAWWAVTAQHIVPKLL--RDA 1013

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                  + L +       V   ++   LG   + HPL + +  L K   +   +  A   
Sbjct: 1014 PIAEAPLALPQADEAREIV---DDYASLGLTLNRHPLALLRARLAKQRFRTAADLAACQH 1070

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            G   R   +V  +Q+  T  G+   +V+  +         +P
Sbjct: 1071 GTLARACGIVTVRQRPGTANGT--IFVSIEDETGSINVIVWP 1110


>gi|314923721|gb|EFS87552.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL001PA1]
          Length = 1031

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/1027 (26%), Positives = 442/1027 (43%), Gaps = 105/1027 (10%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2    AEAAEACGLSTIIGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTD 56

Query: 119  MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL++ G K      L  L E+      +LTG   G + +       Q AE  L     L
Sbjct: 57   AYLVEGGHKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVRGMPQ-AEAELRRLVDL 115

Query: 178  F-GDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  D + V L  HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV 
Sbjct: 116  FGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLSTVATTAAHYAGGEQFELACALSAVR 175

Query: 236  HSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                + + D      P   L++ +EM  +FS   +A++NTV +A R +F L     + PR
Sbjct: 176  ARRSLDEMDGWLPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHL---KSVRPR 232

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
              +++  D      + LR+    G         +AK         RL  EL++I    F+
Sbjct: 233  LPDQKVPD-GHTPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDRGFA 283

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV+D  ++A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  R  
Sbjct: 284  GYFLIVSDIAEFAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREE 342

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D 
Sbjct: 343  EPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAIRDMAKALGYSQGQQDA 402

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              + +      P+      D              D +  ++Q++ GL RH   H+AG+V+
Sbjct: 403  WSRQMERRSVPPLPHD--PDGPEIP---------DDVTTLAQQVMGLPRHLGIHSAGMVL 451

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q   
Sbjct: 452  TREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCG 511

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ IP ++   Y +L    ++G+FQ+ES      L  ++P C  D+   + L RPG
Sbjct: 512  RFWTLASIPRNEPGVYDMLCRGDSVGVFQVESRAQIGVLPRLRPRCFYDLAVEIGLIRPG 571

Query: 654  PIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+       Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD
Sbjct: 572  PVQGGAVHPYIRRRTGAEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADAD 631

Query: 712  VLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAM  K+  E ++  + +   G + NGI    A  I+  +  FA++GF +SHA ++A
Sbjct: 632  LLRRAMGSKRGVERINSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFA 691

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V   +
Sbjct: 692  GLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADL 751

Query: 831  G----------------------------------------------DNRIYYSLAAIKG 844
                                                              +   L+ + G
Sbjct: 752  ELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSG 811

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +   TA  I+E    + F SL+D   RVD        +E+L  AGA D    SR   L  
Sbjct: 812  INIETATRIVEERERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQ 868

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +                   N     +                      ++ R  G   +
Sbjct: 869  I----------------GQINGVGPGQLDVQVVTQPPLLPEPTQMELLGDDLRATGISTA 912

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+   +  L + G+   +       G  + +A +V  +Q+  T  G  + ++   +  
Sbjct: 913  DHPVRQVRDALNRRGVVRVDRLDGVESGRRVEVAGVVTHRQRPGTAGG--VTFLNLEDET 970

Query: 1025 KEYEANF 1031
                   
Sbjct: 971  GLLNVIV 977


>gi|116511322|ref|YP_808538.1| DNA polymerase III DnaE [Lactococcus lactis subsp. cremoris SK11]
 gi|116106976|gb|ABJ72116.1| DNA polymerase III catalytic subunit, DnaE type [Lactococcus lactis
            subsp. cremoris SK11]
          Length = 1070

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/1041 (28%), Positives = 503/1041 (48%), Gaps = 99/1041 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS L+  + L++ L+         + I D  NL +A  F +KA    +QP+
Sbjct: 2    FAPLNTKTEYSFLDSVVKLDDYLEGALRLGYKTVGICDVGNLHAAFRFVRKAQMLNLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            I  +L+ + +                 S   +    EGY+ L+ + +            R
Sbjct: 62   ISIELNFEWR-------------GLPVSFSFIAKNTEGYKNLLRIST-------FHNYDR 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               S +Q     G+ ++   + G +        S++A          F D  Y+      
Sbjct: 102  RQFSDIQN-HLSGIALVIPETYGALSEL-----SELAA---------FADEAYI------ 140

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D+  +           LP +      +L+  D E   +L AV       +     V+ 
Sbjct: 141  GIDQQTDK-----GTKFNLPTLPFPAVRYLNFADNEILAILHAVRDGLSFDES--LTVSS 193

Query: 251  DHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            +  L+      S F    P+AL N   +  + ++       + PRF      D ++E   
Sbjct: 194  NELLQRPEAYESYFQKYFPQALTNLSVLTAKIAYPFDEKLEL-PRF------DKKREAVE 246

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHA----------------QDYRQRLDFELNVIARMKF 353
             LR +A+ GL  RL +     G  +                  Y++RL+ EL+VI +M F
Sbjct: 247  HLREEAILGLSARLEEKKSLTGISSVSLANALAEESTMIDLSVYQERLEKELSVIHQMGF 306

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFLIVAD +++A++ +I  G GRGS AGS+ AY L IT +DP++ +L FERFLNP+R+
Sbjct: 307  DDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVKHNLFFERFLNPERV 366

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            +MPD DID   DRR E++ Y++N+YG + VAQI+TF +L  + ALRDVG+A  M  +++ 
Sbjct: 367  AMPDIDIDMPDDRRAELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELS 426

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
             L +++              ++ RF+   L +  + R+ E+++++EG+ R  STHA+G+V
Sbjct: 427  NLTRMLVRRFG--TLADEYENNQRFKAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVV 484

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            + +  L   V +      DL +TQ+    +E  GL+K DFLGL+ LT++ +  D + +R 
Sbjct: 485  LSEESLVNYVSL--KPSEDLALTQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLVKKRQ 542

Query: 594  -VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             + +D   I  +D  T  L     T+GIFQ E+  MR+ L  + P   +DI+   S++RP
Sbjct: 543  KIDIDPLKIDLEDEATLALFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRP 602

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP   I  +  R++GKE +  +   I  +LK T G++IYQEQ+MQ+AQ  +G+SL +AD+
Sbjct: 603  GPSQFIPQFVARRHGKEIVPVVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADL 662

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRA+ KK   E++K +E F+  A + G SK  A  I++L+ +FA+YGFN+SH  AY  +
Sbjct: 663  LRRAISKKKGSELEKLREDFLISAGEMGHSKEKAEEIYDLIERFANYGFNRSHGFAYGAL 722

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            ++Q A+ K H+P EF    +        K +    DA     +I  P++N   +   V +
Sbjct: 723  AFQIAYFKAHFPDEFYEIQLRDR-----KREVMILDALDNGFEIEKPNINQMKIGDFVKN 777

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             +I   LA ++G+    A+ I+E   ++ + +L DF  ++ +    +  +  L+  GA D
Sbjct: 778  KKIRLGLAHVQGISRDLAKWIVE---NQSYKNLADFVEKLPNNFHKKESILPLIQIGAFD 834

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                +R +L  +L +      +         ++IF    G        E +S    + ++
Sbjct: 835  YADSNRGKLAYNLADHANLLNYYS-------DDIFMASSGGGFAYHEAEDYSE---TEKY 884

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+ +LG   + HPL      L +     +      ++ + + +   +   +  +T+ G
Sbjct: 885  DFEKNLLGIGVTPHPLQS----LAQRFSGNFTPIANLVKNSRMTILVEINYIRTHRTKTG 940

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + ++T S+  + ++   FP
Sbjct: 941  QTMAFLTVSDSRENFDVTLFP 961


>gi|314981796|gb|EFT25889.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL110PA3]
 gi|315091577|gb|EFT63553.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL110PA4]
          Length = 1031

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/1027 (26%), Positives = 443/1027 (43%), Gaps = 105/1027 (10%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2    AEAAEACGLSTIIGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTD 56

Query: 119  MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL++ G K      L  L E+      +LTG   G + +       Q AE  L     L
Sbjct: 57   AYLVEGGHKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVRGMPQ-AEAELRRLVDL 115

Query: 178  F-GDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  D + V L  HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV 
Sbjct: 116  FGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLSTVATTAAHYAGGEQFELACALSAVR 175

Query: 236  HSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                + + D      P   L++ +EM  +FS   +A++NTV +A R +F L     + PR
Sbjct: 176  ARRSLDEMDGWLPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHL---KSVRPR 232

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
              +++  D      + LR+    G         +AK         RL  EL++I    F+
Sbjct: 233  LPDQKVPD-GHTPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDRGFA 283

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV+D  ++A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  R  
Sbjct: 284  GYFLIVSDIAEFAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREE 342

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D 
Sbjct: 343  EPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAIRDMAKALGYSQGQQDA 402

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              + +      P+      D              D +  ++Q++ GL RH   H+AG+V+
Sbjct: 403  WSRQMERRSVPPLPHD--PDGPEIP---------DDVTTLAQQVMGLPRHLGIHSAGMVL 451

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q   
Sbjct: 452  TREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCG 511

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ IP ++   Y +L    ++G+FQ+ES      L  ++P C  D+   + L RPG
Sbjct: 512  RFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGVLPRLRPRCFYDLAVEIGLIRPG 571

Query: 654  PIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+       Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   ++++AD
Sbjct: 572  PVQGGAVHPYIRRRTGAEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTVADAD 631

Query: 712  VLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAM  K+  E ++  + +   G + NGI    A  I+  +  FA++GF +SHA ++A
Sbjct: 632  LLRRAMGSKRGVERINSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFA 691

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V   +
Sbjct: 692  GLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADL 751

Query: 831  G----------------------------------------------DNRIYYSLAAIKG 844
                                                              +   L+ + G
Sbjct: 752  ELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSG 811

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +   TA  I+E    + F SL+D   RVD        +E+L  AGA D    SR   L  
Sbjct: 812  INIETATRIVEERERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQ 868

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +                   N     +                      ++ R  G   +
Sbjct: 869  I----------------GQINGVGPGQLDVQVVTQPPLLPEPTQMELLGDDLRATGISTA 912

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+   +  L + G+   +       G  + +A +V  +Q+  T  G  + ++   +  
Sbjct: 913  DHPVRQVRDALNRRGVVRVDRLDGVESGRRVEVAGVVTHRQRPGTAGG--VTFLNLEDET 970

Query: 1025 KEYEANF 1031
                   
Sbjct: 971  GLLNVIV 977


>gi|314965837|gb|EFT09936.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL082PA2]
 gi|315094870|gb|EFT66846.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL060PA1]
 gi|315104143|gb|EFT76119.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL050PA2]
 gi|327325029|gb|EGE66837.1| error-prone DNA polymerase [Propionibacterium acnes HL103PA1]
          Length = 1031

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/1027 (26%), Positives = 442/1027 (43%), Gaps = 105/1027 (10%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2    AEAAEACGLSTIIGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTD 56

Query: 119  MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL++ G K      L  L E+      +LTG   G + +       Q AE  L     L
Sbjct: 57   AYLVEGGHKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVRGMPQ-AEAELRRLVDL 115

Query: 178  F-GDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  D + V L  HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV 
Sbjct: 116  FGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLSTVATTAAHYAGGEQFELACALSAVR 175

Query: 236  HSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                + + D      P   L++ +EM  +FS   +A++NTV +A R +F L     + PR
Sbjct: 176  ARRSLDEMDGWLPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHL---KSVRPR 232

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
              +++  D      + LR+    G         +AK         RL  EL++I    F+
Sbjct: 233  LPDQKVPD-GHTPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDRGFA 283

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV+D  ++A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  R  
Sbjct: 284  GYFLIVSDIAEFAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREE 342

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D 
Sbjct: 343  EPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAIRDMAKALGYSQGQQDA 402

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              + +      P+      D              D +  ++Q++ GL RH   H+AG+V+
Sbjct: 403  WSRQMERRSVPPLPHD--PDGPEIP---------DDVTTLAQQVMGLPRHLGIHSAGMVL 451

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q   
Sbjct: 452  TREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCG 511

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ IP ++   Y +L    ++G+FQ+ES      L  ++P C  D+   + L RPG
Sbjct: 512  RFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGVLPRLRPRCFYDLAVEIGLIRPG 571

Query: 654  PIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+       Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD
Sbjct: 572  PVQGGAVHPYIRRRTGAEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADAD 631

Query: 712  VLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAM  K+  E ++  + +   G + NGI    A  I+  +  FA++GF +SHA ++A
Sbjct: 632  LLRRAMGSKRGVERINSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFA 691

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V   +
Sbjct: 692  GLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADL 751

Query: 831  G----------------------------------------------DNRIYYSLAAIKG 844
                                                              +   L+ + G
Sbjct: 752  ELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSG 811

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +   TA  I+E    + F SL+D   RVD        +E+L  AGA D    SR   L  
Sbjct: 812  INIETATRIVEERERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQ 868

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +                   N     +                      ++ R  G   +
Sbjct: 869  I----------------GQINGVGPGQLDVQVVTQPPLLPEPTQMELLGDDLRATGISTA 912

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+   +  L + G+   +       G  + +A +V  +Q+  T  G  + ++   +  
Sbjct: 913  DHPVRQVRDALNRRGVVRVDRLDGVESGRRVEVAGVVTHRQRPGTAGG--VTFLNLEDET 970

Query: 1025 KEYEANF 1031
                   
Sbjct: 971  GLLNVIV 977


>gi|167892674|ref|ZP_02480076.1| error-prone DNA polymerase [Burkholderia pseudomallei 7894]
          Length = 850

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/864 (28%), Positives = 388/864 (44%), Gaps = 49/864 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            R+    L         +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 124 YRLTPRMLAAPPRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLVQ 183

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D     QV        + +VA  +            D + A+     +++     
Sbjct: 184 LQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHAL 243

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 244 APNGEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----HT 297

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D +++
Sbjct: 298 PTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVKY 351

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   R
Sbjct: 352 ARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQR 410

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 411 REEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 470

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             L   A      E     P +    EI+ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 471 DLLARFASVGLDPEV----PLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVE 526

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                   V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 527 NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 586

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
            IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 587 HIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 646

Query: 659 -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 647 VHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 706

Query: 713 LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           LRRAM   K K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A 
Sbjct: 707 LRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAK 766

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
           ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 767 LAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASLE 826

Query: 831 ---------GDNRIYYSLAAIKGV 845
                    G   +   L+ ++G+
Sbjct: 827 AQPGAAPPDGRPAVRLGLSLVRGL 850


>gi|302552433|ref|ZP_07304775.1| LOW QUALITY PROTEIN: DNA polymerase III subunit alpha [Streptomyces
            viridochromogenes DSM 40736]
 gi|302470051|gb|EFL33144.1| LOW QUALITY PROTEIN: DNA polymerase III subunit alpha [Streptomyces
            viridochromogenes DSM 40736]
          Length = 914

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/737 (34%), Positives = 395/737 (53%), Gaps = 43/737 (5%)

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +R + E+ VI  M FS YFL+VAD  ++A+ N IP+GPGRGS  GS+ AYA  IT++ PL
Sbjct: 56   ERFETEMAVIGPMGFSSYFLVVADICRYARDNGIPLGPGRGSATGSLVAYATRITELCPL 115

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               LLFERFLNP+R++ PD D+DF   +RD ++RYV +KYG E  A + TFG ++AK A+
Sbjct: 116  EHGLLFERFLNPERINPPDVDLDFDDRQRDRMVRYVIDKYGDEYTALVNTFGKIKAKNAI 175

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDS--------RFREARLADPSVD 509
            +D  R L  PY+  +R+ K +P D       L A+ D S          R+   ++P V 
Sbjct: 176  KDSARILGYPYAHGERITKALPPDQNGKSAPLDALFDASHARYPEAGEIRQMYGSEPDVA 235

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            R+++ ++ +EGL R    HAA +++    L+  +P++        +T F+    E  GL+
Sbjct: 236  RVIDTARGVEGLTRGTGVHAAAVILSKTRLTDRIPLHLRASDGARITGFDYPSCEAMGLV 295

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL-------------------IPFDDHETYH 610
            K DFLGL+ L ++ ++++ + +    V L+                    IP DD  TY 
Sbjct: 296  KMDFLGLRNLGVIDQAIENVREN-RGVRLATVDPGDGAGGDPGGDPGTVVIPLDDARTYR 354

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGK 668
            LL    TLG+FQL+  GMR  L+ M P   EDI A  +LYRPGP+  +    Y  R+NGK
Sbjct: 355  LLAEANTLGVFQLDGGGMRALLKLMAPTRFEDIAAANALYRPGPMAANAHTNYALRQNGK 414

Query: 669  EKIVSIHPLI----DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +    IHP +    +P+L  T  +++YQEQ+M +A+ L+GY+L  AD+LRRAMGKK  E 
Sbjct: 415  QAATPIHPELREALEPILGPTHHLLVYQEQIMAVARQLAGYTLGGADMLRRAMGKKKPEV 474

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +  + E+F  G + NG S      +++++  F+ Y FNKSH A Y ++SY TA++K +YP
Sbjct: 475  LAAEWEKFHGGMTANGYSDEAVRALWDVMLPFSGYAFNKSHTAGYGLVSYWTAYLKANYP 534

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             E++AA +T   D+ +K   +  DAR   ++++PP +N    +F    + + + L +++ 
Sbjct: 535  AEYMAALLTSVGDDKDKAALYLADARANGVRVLPPDINESVAEFTAVGDDVRFGLRSVRN 594

Query: 845  VGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG      +++A      F S  DF  +     LN+R +ESL+ AGA D  G+SR  L  
Sbjct: 595  VGDGVIEAVIDARRRGGRFTSFSDFLHKAGLPALNKRAVESLIKAGAFDSLGHSRKGLTA 654

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT------LEKFSVENSSVRFENEQR 957
              +        V+K  +   +++FA   G  +D                        E+ 
Sbjct: 655  VHEAAVDAVIPVKKAASFGQDDLFAGLGGAEADAAPAFGLDFAVAEEEWPRRQLLATERE 714

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIG 1016
            +LG Y S HPLD  + IL         E +A+ R +  +RL+ ++   Q+K T++G+   
Sbjct: 715  MLGLYVSAHPLDGAERILAAARDCSVAELLASGRTSGEVRLSGLITGVQRKVTKQGNAWA 774

Query: 1017 WVTFSEPAKEYEANFFP 1033
             V  ++     E  FFP
Sbjct: 775  VVQLTDRDAGIEVLFFP 791


>gi|167835340|ref|ZP_02462223.1| error-prone DNA polymerase [Burkholderia thailandensis MSMB43]
          Length = 822

 Score =  700 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/836 (27%), Positives = 379/836 (45%), Gaps = 32/836 (3%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           +  P +  L   S++S L GA S   ++++        IAITD  +L  A      A A 
Sbjct: 6   KSLPDYAELFCRSNFSFLHGASSAEELVERAKKQGYRGIAITDECSLAGAPRMHVAAKAQ 65

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           G+  ++G   D+   D       G+ P P    +VLL    EGY  L EL+S    +D  
Sbjct: 66  GLPLVVGAYFDVTPDD----VAPGRDPGPGTFGLVLLAQNREGYGNLSELISW-RRMDAP 120

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
           K + R+    L         +        I    +   + V + +L  F  LFG+R  + 
Sbjct: 121 KGTYRLTPRMLAAPPPPFAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLG 180

Query: 186 L-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           L Q  R  D     +V        + LVA  +            D + A+     +++  
Sbjct: 181 LVQLQRALDGAHREEVRAAGERRGMRLVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECG 240

Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                  + +L+ R  +  +F    +A+  T  +   C+F L       P  I       
Sbjct: 241 HALAPNAEQHLRTRQRIAQLFP--ADAVAQTCRMLDACAFSLDELRYEYPHEIVPAG--- 295

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                + L  +  AG   R   G        +  R+R+++EL +IA + +  YFL V D 
Sbjct: 296 -HTPASYLAQETWAGARERYPSGM------PETVRKRIEYELALIAELNYEPYFLTVYDI 348

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           +Q+A+  NI +  GRGS A SV  Y L +T++DP R +LLFERF++ +R   PD D+DF 
Sbjct: 349 VQYARSKNI-LCQGRGSAANSVVCYCLHVTEVDPERSTLLFERFISRERGEPPDIDVDFE 407

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K      
Sbjct: 408 HQRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKAHRWFD 467

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                L                P +    E++ +L    RH S H+ G V+    L++LV
Sbjct: 468 GSRDLLARFESVG----LDPDTPLIGAWAELAARLLNFPRHLSQHSGGFVVSRGKLTRLV 523

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598
           P+         V Q++   +E  GL+K D L L  L+ L ++ D +     A+ G    +
Sbjct: 524 PVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMVTAWRGARDGKPFGM 583

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
           + I   D +TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   
Sbjct: 584 AHIEQGDVKTYDMICRADTVGVFQIESRAQMSMLPRLRPRNYYDLVIEVAIVRPGPIQGG 643

Query: 659 --VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
               Y  R+ G E +      +   L+ T+GV I+QEQVMQIA + +G++  EAD LRRA
Sbjct: 644 AVHPYLKRRQGLEPVTYPKADLKEALERTRGVPIFQEQVMQIAIIAAGFTPGEADELRRA 703

Query: 717 MGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
           M   K K  +++ + + + G  +       A  IFE +  F +YGF +SHAA++A + Y 
Sbjct: 704 MAAWKRKGNIEQYRRKIVDGMRERDYPPEFAEQIFEQIKGFGEYGFPESHAASFAHLVYA 763

Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
           ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 764 SSWLKCHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSDWEASLE 819


>gi|281490990|ref|YP_003352970.1| DNA polymerase III subunit alpha [Lactococcus lactis subsp. lactis
            KF147]
 gi|281374748|gb|ADA64268.1| DNA polymerase III, alpha subunit [Lactococcus lactis subsp. lactis
            KF147]
          Length = 1060

 Score =  700 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/1031 (27%), Positives = 501/1031 (48%), Gaps = 89/1031 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS L+  + +++ L+         + I D  NL +A  F +KA    +QPI
Sbjct: 2    FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            I  +L+ + +                 +   +    EGY+ L+ + +   L + G++   
Sbjct: 62   ISIELNFEWR-------------GLPIAFSFIAKDTEGYKNLLRIST---LHNYGRRQFS 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               + L      G+ ++   + G +        S VA++  +                  
Sbjct: 106  DIQNHL-----SGIALILPETYGSLSE--LTELSSVADEAFI------------------ 140

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D+  +           LP +      +L+  D E   +L AV       +     ++ 
Sbjct: 141  GIDQLTDK-----GAKFNLPTLPFPAIRYLNFADNEILAILHAVRDGVPFDES--LTISS 193

Query: 251  DHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            +  L+      + F    P+AL+N   +  + ++       +LPRF      D +++   
Sbjct: 194  NELLQRPEAYETYFQKYFPQALKNLSALTAKIAYQFDEKL-VLPRF------DKKRQAVE 246

Query: 310  ELRNKAVAGLEVRLAQGAI------AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             LR +A  GL  RL +  +      A       Y++RL+ EL+VI +M F  YFLIVAD 
Sbjct: 247  HLREEATLGLSARLEEKKLLTDVSSANLQDLSVYQERLEKELSVIHQMGFDDYFLIVADL 306

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A++  I  G GRGS AGS+ AY L IT +DP++ +L FERFLNP+R++MPD DID  
Sbjct: 307  LRYAREQEIYCGMGRGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVAMPDIDIDMP 366

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR E++ Y++N+YG + VAQI+TF +L  + ALRDVG+A  M  +++  L +++    
Sbjct: 367  DDRRAELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLTRMLVRRF 426

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                      ++  F+   L +  + R+ E+++++EG+ R  STHA+G+V+ +  L   V
Sbjct: 427  G--TLADEYENNQHFKAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVVLSEESLVNYV 484

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIP 602
             +      DL +TQ+    +E  GL+K DFLGL+ LT++ +  D + +R     D   I 
Sbjct: 485  SL--KPSEDLALTQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLVKRRQKNDIDPLKIN 542

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D +T  L     T+GIFQ E+  MR+ L  + P   +DI+   S++RPGP   I  + 
Sbjct: 543  LEDEDTLALFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQFIPQFV 602

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R++GKE + ++   I  +LK T G++IYQEQ+MQ+AQ  +G+SL +AD+LRRA+ KK  
Sbjct: 603  ARRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKKKG 662

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             E++K +E F+  AS NG SK  A  I++L+ +FA+YGFN+SH  AY  +++Q A+ K H
Sbjct: 663  SELEKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFKAH 722

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            +P EF    +        K +    DA +   +I  PS+N   +   V + +I   LA +
Sbjct: 723  FPDEFYEIKLRDR-----KREVMILDALENGFEIEKPSINLMKIGDFVKNKKIRLGLAHV 777

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            +G+    A+ I+E   ++P+  L DF  ++ +    +  +  L+  GA D    +R +L 
Sbjct: 778  QGISRDLAKWIVE---NQPYKDLADFVEKLPNNFHKKENILPLIQIGAFDYADSNRGKLA 834

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             +L +      +         ++IF    G        E +S    + +++ E+ +LG  
Sbjct: 835  YNLADHANLLNYYS-------DDIFMASSGGGFAYHEAEDYSE---TEKYDFEKNLLGIG 884

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             + HPL                +    ++   + +   +   +  + + G  + ++T S+
Sbjct: 885  VTPHPLQNLARRFEG-NFTPLAQL---VKNRRMTILVEINYIRTHRAKTGQTMAFLTVSD 940

Query: 1023 PAKEYEANFFP 1033
              + ++   FP
Sbjct: 941  SRENFDVTLFP 951


>gi|125623350|ref|YP_001031833.1| DNA polymerase III DnaE [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492158|emb|CAL97087.1| DNA polymerase III alpha subunit [Lactococcus lactis subsp. cremoris
            MG1363]
 gi|300070098|gb|ADJ59498.1| DNA polymerase III DnaE [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 1070

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/1041 (27%), Positives = 500/1041 (48%), Gaps = 99/1041 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS L+  + L++ L+         + I D  NL +A  F +KA    +QP+
Sbjct: 2    FAPLNTKTEYSFLDSVVKLDDYLEGALRLGYKTVGICDVGNLHAAFRFVRKAQMLNLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            I  +L+ + +                 S   +    EGY+ L+ + +            R
Sbjct: 62   ISIELNFEWR-------------GLPVSFSFIAKNTEGYKNLLRIST-------FHNYDR 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               S +Q     G+ ++   + G          S++A          F D  Y+      
Sbjct: 102  RQFSDIQN-HLSGIALVIPETYG-----TLSELSELAA---------FADEAYI------ 140

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D+  +           LP +      +L+  D E   +L AV       +     V+ 
Sbjct: 141  GIDQQTDK-----GTKFNLPTLPFPAVRYLNFADNEILAILHAVRDGLSFDES--LTVSS 193

Query: 251  DHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            +  L+      S F    P+AL N   +  + ++       + PRF      D ++E   
Sbjct: 194  NELLQRPEAYESYFQKYFPQALTNLSVLTAKIAYQFDEKLEL-PRF------DKKREAVE 246

Query: 310  ELRNKAVAGLEVRLAQG----------------AIAKGYHAQDYRQRLDFELNVIARMKF 353
             LR +A+ GL  RL +                   +       Y++RL+ EL+VI +M F
Sbjct: 247  HLREEAILGLSARLEEKKSLTEISSVSLASALAEESTTIDLSVYQERLEKELSVIHQMGF 306

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFLIVAD +++A++ +I  G GRGS AGS+ AY L IT +DP++ +L FERFLNP+R+
Sbjct: 307  DDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVKHNLFFERFLNPERV 366

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            +MPD DID   DRR E++ Y++N+YG + VAQI+TF +L  + ALRDVG+A  M  +++ 
Sbjct: 367  AMPDIDIDMPDDRRAELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELS 426

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
             L +++              ++ RF+   L +  + R+ E+++++EG+ R  STHA+G+V
Sbjct: 427  NLTRMLVRRFG--TLADEYENNQRFKAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVV 484

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            + +  L   V +      DL +TQ+    +E  GL+K DFLGL+ LT++ +  D + +R 
Sbjct: 485  LSEESLMNYVSL--KPSEDLALTQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLVKKRQ 542

Query: 594  -VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             + +D   I  +D  T  L     T+GIFQ E+  MR+ L  + P   +DI+   S++RP
Sbjct: 543  KIDIDPLKIDLEDETTLALFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRP 602

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP   I  +  R++GKE +  +   I  +LK T G++IYQEQ+MQ+AQ  +G+SL +AD+
Sbjct: 603  GPSQFIPQFVARRHGKEIVPVVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADL 662

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRA+ KK   E++K +E F+  A + G SK  A  I++L+ +FA+YGFN+SH  AY  +
Sbjct: 663  LRRAISKKKGSELEKLREDFLISAGELGHSKEKAEEIYDLIERFANYGFNRSHGFAYGAL 722

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            ++Q A+ K H+P EF    +        K +    DA     +I  P++N   +   V +
Sbjct: 723  AFQIAYFKAHFPDEFYEIQLRDR-----KREVMILDALDNGFEIEKPNINQMKIGDFVKN 777

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             +I   LA ++G+    A+ I+E   ++ + +L DF  ++ +    +  +  L+  GA D
Sbjct: 778  KKIRLGLAHVQGISRDLAKWIVE---NQSYKNLADFVEKLPNNFHKKESILPLIQIGAFD 834

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                +R +L  +L +      +         ++IF    G        E +S    + ++
Sbjct: 835  YADSNRGKLAYNLADHANLLNYYS-------DDIFMASSGGGFAYHEAEDYSE---TEKY 884

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+ +LG   + HPL      L +     +      ++   + +   +   +  +T+ G
Sbjct: 885  DFEKNLLGIGVTPHPLQS----LAQRFSGNFTPIANLVKNRRMTILVEINYIRTHRTKTG 940

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + ++T S+  + ++   FP
Sbjct: 941  QTMAFLTVSDSRENFDVTLFP 961


>gi|167579726|ref|ZP_02372600.1| error-prone DNA polymerase [Burkholderia thailandensis TXDOH]
          Length = 925

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/865 (27%), Positives = 385/865 (44%), Gaps = 49/865 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++        IAITD  +L  A      A    + 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAKKHGYRGIAITDECSLAGAPRMHVAAKEHELP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G   D+   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFDVTPDD----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            R+    L     E + +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 124 YRLTPRMLAAPPPEFIHLRGVPDCFAILVPTYPARADVLDAQLAWFGALFGERARLGLVQ 183

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D     QV        + +VA  +    +       D + A+     + +     
Sbjct: 184 LQRALDGAHREQVRAAGERRGMRIVALGDVTMHTRSCKPLQDTMTAIRLGMPIGECGHAL 243

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 244 APNAEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDELRYEYPHEIVPAG----HT 297

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + L  +  AG   R   G        +  RQR+ FEL +IA +K+  YFL V D +++
Sbjct: 298 PTSYLAQETWAGARRRYPDGV------PEAVRQRIGFELALIADLKYEPYFLTVYDIVEY 351

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A+  +I +  GRGS A SV  Y L +T+++P + +LLFERF++ +R   PD D+DF   R
Sbjct: 352 ARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFISRERGEPPDIDVDFEHQR 410

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 411 REEVIQYLYGKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 470

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             L   A      +     P +    +++ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 471 DLLARFASVGLDPDV----PLIRTWAKLAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVE 526

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                   V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 527 NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 586

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
            IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 587 HIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 646

Query: 659 -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 647 VHPYLERRRIAAGEVEGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 706

Query: 713 LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           LRRAM   K K ++ K   R + G  + G S   A  IFE +  F +YGF +SHAA++A 
Sbjct: 707 LRRAMAAWKRKGDLGKYHRRIVDGMLERGYSCEFAEQIFEQIKGFGEYGFPESHAASFAK 766

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
           ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 767 LAYASSWLKCHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSDWEASLE 826

Query: 831 ---------GDNRIYYSLAAIKGVG 846
                    G   +   L+ ++G+ 
Sbjct: 827 ARPGEAPPDGRPAVRLGLSLVRGMS 851


>gi|167617801|ref|ZP_02386432.1| error-prone DNA polymerase [Burkholderia thailandensis Bt4]
          Length = 852

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/866 (27%), Positives = 386/866 (44%), Gaps = 49/866 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++        IAITD  +L  A      A    + 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAKKHGYRGIAITDECSLAGAPRMHVAAKGHELP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G   D+   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFDVTPDD----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            R+    L     E + +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 124 YRLTPRMLAAPPPEFIHLRGVPDCFAILVPTYPARADVLDAQLAWFGALFGERARLGLVQ 183

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D     QV        + +VA  +    +       D + A+     + +     
Sbjct: 184 LQRALDGAHREQVRAAGERRGMRIVALGDVTMHTRSCKPLQDTMTAIRLGMPIGECGHAL 243

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 244 APNAEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDELRYEYPHEIVPAG----HT 297

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + L  +  AG   R   G        +  RQR+ FEL +IA +K+  YFL V D +++
Sbjct: 298 PTSYLAQETWAGARRRYPDGV------PEAVRQRIGFELALIADLKYEPYFLTVYDIVEY 351

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A+  +I +  GRGS A SV  Y L +T+++P + +LLFERF++ +R   PD D+DF   R
Sbjct: 352 ARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFISRERGEPPDIDVDFEHQR 410

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 411 REEVIQYLYGKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 470

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             L   A      +     P +    +++ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 471 ALLARFASVGLDPDV----PLIRTWAKLAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVE 526

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                   V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 527 NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 586

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
            IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 587 HIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 646

Query: 659 -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 647 VHPYLERRRIAAGEVEGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 706

Query: 713 LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           LRRAM   K K ++ K   R + G  + G S+  A  IFE +  F +YGF +SHAA++A 
Sbjct: 707 LRRAMAAWKRKGDLGKYHRRIVDGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAK 766

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
           ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 767 LAYASSWLKCHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSDWEASLE 826

Query: 831 ---------GDNRIYYSLAAIKGVGT 847
                    G   +   L+ ++G+  
Sbjct: 827 ARPGEAPPDGRPAVRLGLSLVRGMSE 852


>gi|75676440|ref|YP_318861.1| error-prone DNA polymerase [Nitrobacter winogradskyi Nb-255]
 gi|74421310|gb|ABA05509.1| error-prone DNA polymerase, DnaE-like protein [Nitrobacter
            winogradskyi Nb-255]
          Length = 1175

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/1113 (23%), Positives = 439/1113 (39%), Gaps = 130/1113 (11%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  + + +++S L GA      + + +  + P I I D N L   +    +      
Sbjct: 7    TPCYAEIGIATNFSFLHGASHPQEYVHQASELRLPVIGIADRNTLAGVVRAYTELK---- 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             P +  +  + +   L             P I++       Y RL +L++R       K 
Sbjct: 63   NPEVRYKPRLLIGSRLVF-------IDGTPDILIYPRDRNAYGRLCQLLTRGKRA-ATKG 114

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               + L  L +     L++L         RA          + L   ++   D +++   
Sbjct: 115  ECHLKLDDLLDFSEGQLLVLALPHRLETARAM---------EVLDRLRQASADGVWLAAS 165

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQKDR 245
              +RG DR R  ++ ++A T  +PL+ATN  L+         DVL  V   T V +   R
Sbjct: 166  LLYRGDDRRRLLRLQRIAATAHVPLLATNEVLYHHPARRPLQDVLTCVREKTAVDAIGRR 225

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              +  + +LK+  EM  +F DLPEA+  T+  A R  F L       P         + K
Sbjct: 226  LELNAERHLKSACEMEKLFRDLPEAIAETMRFASRIEFTLDQLQYQYPDEPVP----LGK 281

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L +   AG           +       R+ L  EL +I R+K++ YFL V D ++
Sbjct: 282  SAQRHLEDLTWAGAHKYFPVRIPPRT------RKVLHKELRLIRRLKYAHYFLTVHDIVR 335

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WA+  +I +  GRGS A S   Y L +T +DP +  LLFERF++ +R+  PD D+DF   
Sbjct: 336  WARDQDI-LCQGRGSAANSAVCYVLGVTSVDPTKVDLLFERFISRERLEPPDIDVDFEHS 394

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV++YV  +YG  R A I T    + ++A+RDVG+AL +       L   +      
Sbjct: 395  RREEVMQYVYRRYGRHRAAIIATVIHYRPRSAIRDVGKALGLTEDVTAALADTVWGSWGD 454

Query: 486  PVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             VS      D++ R+A     +P V R + ++ +L G  RH S H  G V+    L   V
Sbjct: 455  EVS------DAQIRQAGFDPRNPMVRRAVALATELIGFPRHLSQHVGGYVLTQDRLDTYV 508

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL-I 601
            P+      +    +++   ++   ++K D L L  LT ++K  D +A+    + +L+   
Sbjct: 509  PIGNAAMENRTFIEWDKDDVDALRMMKVDVLALGMLTCIRKCFDLMAEHKGERRELADIR 568

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIV 659
              DD E Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D + 
Sbjct: 569  SRDDDEVYQMLQRGESLGVFQVESRAQMNMLPRLRPRTFYDLVIEVAIVRPGPIQGDMVH 628

Query: 660  VYNNRK-NGKEKIVSIHP------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
             Y  R+    EKI   +P       +  +L +T GV ++QEQ M+IA   + ++  EA+ 
Sbjct: 629  PYLKRRAMDPEKIDYPYPKNGDRNELRNVLHKTLGVPLFQEQAMRIAIEAAKFTSEEANG 688

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM   +    + K + + +      G     A N FE +  F  YGF +SHAA++A 
Sbjct: 689  LRRAMATFRHVGTIGKFEAKMVGNMIARGYDPVFARNCFEQIKGFGSYGFPESHAASFAQ 748

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            + Y +AW+K  +P  F    +  +        +   DAR+  +++ P  V+       + 
Sbjct: 749  LVYVSAWLKCFHPDAFCCGLLNSQPMGFYAPAQIVGDARKNGVEVRPVDVSFSHSQNTLE 808

Query: 832  -----DNRIYYSLAAIKGV----------GTTTARHIM-------EASADKPFDSLEDFC 869
                    +      I G               A   +                 L+D C
Sbjct: 809  ERTGRYCAVRLGFRQIDGFKWVDKDEERGRQQAADKELFPPPLWGRVREGGE---LQDQC 865

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQL----------------------LQSLDN 907
             R     L+    E    A        SR QL                        S+++
Sbjct: 866  LRCSPLHLSSTGGERAGSAWIGTSNPSSREQLFSSSLTSDDWGERIVAARQHRPFASIED 925

Query: 908  IQKYAQWVEKNR---------------------------TNKHENIFAHEKGTFSDKITL 940
              +  +  ++                              +    +F             
Sbjct: 926  FARATKLPKRALILLADADAFRSLGLDRRAALWAVRRLPDDVPLPLFESAIARELPDEHA 985

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                    S +   + + +     GHP++  +  L   G+    E         +R A +
Sbjct: 986  APLPPMPLSEQVVADYQTVRLSLKGHPMEFLRGTLSNEGVASCAEVCHANDRRRVRCAGV 1045

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V+ +Q+  +  G  + ++T  +         +P
Sbjct: 1046 VLVRQRPGSANG--VVFMTLEDETGIANIVVWP 1076


>gi|294628568|ref|ZP_06707128.1| error-prone DNA polymerase [Streptomyces sp. e14]
 gi|292831901|gb|EFF90250.1| error-prone DNA polymerase [Streptomyces sp. e14]
          Length = 1097

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/1108 (25%), Positives = 462/1108 (41%), Gaps = 118/1108 (10%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            + P F HL   S +SL  GA     + ++ A     A+A+TD + L   + F++    AG
Sbjct: 5    RVPGFSHLHTVSGFSLRYGASHPERLAERAAERGMDALALTDRDTLAGTVRFAKACATAG 64

Query: 67   IQPIIG-----------------------------CQLDIDMQDNLKMTNQGKTP----- 92
            ++P+ G                                     D      + +TP     
Sbjct: 65   VRPLFGVDLAVAEPRPAPPAGRAAVRPDGSVARRTAPAWPAGGDGAVRPERRRTPVRGGA 124

Query: 93   --FPTVPSIVLLVST-AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
                + P +  L    A G+  L  LV+  +            L    +   +GL +L G
Sbjct: 125  FVDESAPRVTFLARDGARGWADLCRLVTAAHAA-----PADTPLLAWPDNHADGLTVLLG 179

Query: 150  GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR----GYDRYRES-QVVQLA 204
              S  + RA        A + L+ +++++GD L +    H     G    R + + V  A
Sbjct: 180  PDS-DVGRALAAGRPDRAARLLVPWREVYGDALRLEAVWHGRTGTGPGSLRLAARTVGFA 238

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS-- 262
                +  V +N   +         DVL A      +        + + +LK+   M+   
Sbjct: 239  AEQRVRPVLSNAVRYADPGQGPVADVLDAARRLVPIEAAGELD-SGEAWLKDPGAMLHAA 297

Query: 263  --------IFSDLP--EALENTVEIARRCSFILQVHAPIL-PRFIEKECDDIQKEEENEL 311
                    +    P    LE T   A  C    +    +    F E              
Sbjct: 298  RADRRGRRLPPRHPPTGLLEQTRATAAECLVDPEDDLGMGAVHFPEPHLVGAG------- 350

Query: 312  RNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            R  A   L  R A G + +GY   + Y +R+  EL+VIA   F+ YFL VA  +   ++ 
Sbjct: 351  RRTAQRTLASRAAAGMVLRGYAGRRAYWERMHEELDVIAYHGFASYFLTVAQVVDDVREM 410

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I V   RGSGAGS+  + L I   DP+   LL ERFL+  R  +PD DID    RR EV
Sbjct: 411  GIRVA-ARGSGAGSLVNHLLGIAHADPVEHGLLMERFLSKRRFVLPDIDIDVESARRLEV 469

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
             R +  ++G ERVA +    + + + A+RDVG AL M  +++DR+ K  P+  A      
Sbjct: 470  YRRIIGRFGAERVATVAMPETYRVRHAVRDVGAALSMDPAEIDRVAKSFPHIRARDARA- 528

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A+ +    +          RL E+ + L+ L R  + H  G+++ D  L    P+     
Sbjct: 529  ALEELPELKALAGEKERYGRLWELVEALDALPRGIAMHPCGVLLSDASLLARTPVVPTSG 588

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
              LP++QF+ + +E  GL+K D LG++  + +  ++  + +  G ++DL  +P  D  TY
Sbjct: 589  EGLPMSQFDKEDVEDLGLLKLDVLGVRMQSAMAHAVAEVERATGERIDLDSVPPGDPATY 648

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNG 667
             L+ +  TLG FQ+ES G R  +  +QPD   D++  +SL+RPGP+  D +  +   ++G
Sbjct: 649  RLIRSAETLGCFQIESPGQRDLVGRLQPDTFHDLVVDISLFRPGPVAADMVRPFIEARHG 708

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +  +   HP +   L+ET GV+++ EQ++ I  L++G    EAD +RR +     E   +
Sbjct: 709  RAPVRYPHPDLREPLEETYGVVVFHEQIIHIVHLMTGCGRDEADRVRRGLS--DPESQGR 766

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             K  F   A++ G         +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F
Sbjct: 767  IKVWFAQRAAERGYGAETIQRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAF 826

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------------- 831
             A  +T +     K +    DAR+  + I+P  VN   V  ++                 
Sbjct: 827  YAGLLTHDPGMYPK-RLLLADARRRGVPILPLDVNRSGVAHRIELVSEKGESEGGRAPKR 885

Query: 832  --------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                       +  +L+ + G+    A  I    A +P+ SL DF  R    + +R +  
Sbjct: 886  AEGSAATARWGLRLALSDVHGISEAEAARIA---AGRPYASLLDFWERA---RPSRPIAG 939

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
             L   GALD FG +R  L   L  + +      +        +   +K   +    L   
Sbjct: 940  RLAQVGALDAFGANRRDLQLHLTELHR----GARGAGGGQLPLAGGKKTAAAGLPDL--- 992

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
               + + R   E  VL    S + +D ++  L ++G+       A   G  + +A    +
Sbjct: 993  ---SDAERLSAELGVLSMDASRNLMDDHRAFLDELGVVSARRLRAARHGETVLVAGAKAA 1049

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             Q    R G R+ + T  +     +  F
Sbjct: 1050 TQTPPIRSGKRVIFSTLDDGTGLVDRVF 1077


>gi|213609772|ref|ZP_03369598.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 603

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/608 (48%), Positives = 408/608 (67%), Gaps = 21/608 (3%)

Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
           T+   K     +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F  
Sbjct: 2   TLDDPKRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPT 61

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            +        E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F 
Sbjct: 62  GDM-----TTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFP 116

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
           GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+S
Sbjct: 117 GYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVS 176

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           MPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR
Sbjct: 177 MPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDR 236

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           + KL+P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI
Sbjct: 237 ISKLVPPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVI 295

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  
Sbjct: 296 APTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRA 355

Query: 594 ----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                 +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L
Sbjct: 356 KNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVAL 415

Query: 650 YRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLL 702
           +RPGP+ + +   + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L
Sbjct: 416 FRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVL 475

Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
           SGY+L  AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFN
Sbjct: 476 SGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFN 535

Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           KSH+AAYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N
Sbjct: 536 KSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDIN 595

Query: 823 TPCVDFKV 830
           +    F V
Sbjct: 596 SGLYHFHV 603


>gi|313808664|gb|EFS47122.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL087PA2]
 gi|313819151|gb|EFS56865.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL046PA2]
 gi|313820880|gb|EFS58594.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL036PA1]
 gi|313823290|gb|EFS61004.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL036PA2]
 gi|313826186|gb|EFS63900.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL063PA1]
 gi|314925973|gb|EFS89804.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL036PA3]
 gi|314960687|gb|EFT04788.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL002PA2]
 gi|314979513|gb|EFT23607.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL072PA2]
 gi|314986415|gb|EFT30507.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL005PA2]
 gi|314988502|gb|EFT32593.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL005PA3]
 gi|315085135|gb|EFT57111.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL002PA3]
 gi|315090069|gb|EFT62045.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL072PA1]
 gi|327330102|gb|EGE71854.1| error-prone DNA polymerase [Propionibacterium acnes HL096PA3]
 gi|327448373|gb|EGE95027.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL013PA2]
 gi|328755488|gb|EGF69104.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL020PA1]
          Length = 1031

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/1027 (26%), Positives = 446/1027 (43%), Gaps = 105/1027 (10%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2    AEAAEACGLSTIIGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTD 56

Query: 119  MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL++ G K      L  L E+      +LTG   G + +       Q AE  L     L
Sbjct: 57   AYLVEGGRKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGMLQ-AEAELRRLVDL 115

Query: 178  F-GDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  D + V L  HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV 
Sbjct: 116  FGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVR 175

Query: 236  HSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                + + D      P   L++ +EM  +FS   +A++NTV +A R +F L     + PR
Sbjct: 176  ARRSLDEMDGWLPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHL---KSVRPR 232

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
              +++  D      + LR+    G         +AK         RL  EL++I    F+
Sbjct: 233  LPDQKVPD-GHTPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDRGFA 283

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV+D +++A+   I +  GRGS A S   YAL IT +DP+ + L FERFL+  R  
Sbjct: 284  GYFLIVSDIVEFAQSQGI-LCQGRGSAAASAVCYALGITVVDPVFYGLPFERFLSVLREE 342

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D 
Sbjct: 343  EPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDA 402

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              + +      P+      D              D +  ++Q++ GL RH   H+AG+V+
Sbjct: 403  WSRQMERRSVPPLPHD--PDGPEIP---------DDVTTLAQQVMGLPRHLGIHSAGMVL 451

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q   
Sbjct: 452  TREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCG 511

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPG
Sbjct: 512  RFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPG 571

Query: 654  PIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+       Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD
Sbjct: 572  PVQGGAVHPYIRRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADAD 631

Query: 712  VLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAM  K+  E +D  + +   G + NGI    A  I+  +  FA++GF +SHA ++A
Sbjct: 632  LLRRAMGSKRGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFA 691

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V   +
Sbjct: 692  GLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADL 751

Query: 831  G----------------------------------------------DNRIYYSLAAIKG 844
                                                              +   L+ + G
Sbjct: 752  ELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSG 811

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +   TA  I+E    + F SL+D   RVD        +E+L  AGA D    SR   L  
Sbjct: 812  INIETATRIVEERERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQ 868

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  I   A      +      +                           ++ R  G   +
Sbjct: 869  IGQINGVAPGQLDVQVVTQPPLL----------------PEPTQMELLGDDLRATGISTA 912

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+   +  L + G+   +          I +A +V  +Q+  T  G  + ++   +  
Sbjct: 913  DHPVRQVRDALNRRGVVQVDRLDGVETRRRIEVAGVVTHRQRPGTAGG--VTFLNLEDET 970

Query: 1025 KEYEANF 1031
                   
Sbjct: 971  GLLNVIV 977


>gi|84684454|ref|ZP_01012355.1| DNA polymerase III, alpha subunit [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667433|gb|EAQ13902.1| DNA polymerase III, alpha subunit [Rhodobacterales bacterium
           HTCC2654]
          Length = 960

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/999 (24%), Positives = 420/999 (42%), Gaps = 82/999 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ-----KACAA 65
           FV L + S+++ L G       +D+ A     A+A+ D N++   +            A 
Sbjct: 2   FVELCITSNFTFLTGGSHAEEYVDRAALTGMRALAVADVNSVAGIVRAHTFSREIAKMAE 61

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS--------------TAEGYQR 111
               +   Q  I       +    + P    P ++                      + R
Sbjct: 62  ARARLEAEQGIIGPPKPAHLPEPYRLPIDNAPRLLPGARIVTEEGLAITALPRDRAAWGR 121

Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA--EK 169
           L  L+S   L                E G+   ++  G   G +D          A   K
Sbjct: 122 LSRLISTGRLR--------------AEKGSC--LIRLGDLGGALDGMELLLHPPGAGLRK 165

Query: 170 RLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
           R+      + D +++ L   + G D  R + +  LA    LP VA+   +       +  
Sbjct: 166 RVGPLLARYRDDMHLVLAPRYDGRDAQRFTHLAALAKELGLPTVASAEPIMHHGRRRKLV 225

Query: 229 DVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
           DVL AV     V       +   +  L++ SEM+ +F+   +A+  + EIA R  F L  
Sbjct: 226 DVLSAVREGVRVEALGHLAQPNAERRLRSESEMLRLFAGHEDAVHRSGEIADRLGFQLDE 285

Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                P  I        +     L   A  GL  R   GA  +        + L+ EL +
Sbjct: 286 LRYEYPSEIAD-----GETPSARLSRLARRGLRERYPAGAPER------VSKMLEHELAL 334

Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
           IA++ +  YFL V D + +A+   I +  GRGS A SV  YAL +T + P   +++FERF
Sbjct: 335 IAKLNYEPYFLTVNDIVAFARSRGI-LCQGRGSAANSVVCYALGVTSVSPEIGTMVFERF 393

Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
           ++  R   PD D+DF  +RR+EVI+++  +YG  R     T    + K A+R+VGRA+ +
Sbjct: 394 VSEARDEPPDIDVDFEHERREEVIQHIYQRYGRHRAGLCATVIHYRGKRAIREVGRAMGL 453

Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHA 525
               +  +   +       +        +R RE  L   DP +D++L++  +++G  RH 
Sbjct: 454 TEDTIASMSSQVWGWGGTGMR------SARLREIGLDPDDPKLDQVLDLVDEIQGFPRHL 507

Query: 526 STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
           S H  G +I +  L +LVP+      D  V  ++   I+  G++K D L L  LT ++K+
Sbjct: 508 SQHVGGFIITEGRLDELVPIENATMEDRTVICWDKDDIDALGILKVDVLALGMLTCIRKA 567

Query: 586 LDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
              +    G+   L+ +P +D   Y +L    +LG+FQ+ES      L  M+P    D++
Sbjct: 568 FGLMDSHLGIDHTLASLPPEDPVVYDMLCRADSLGVFQVESRAQMNFLPRMKPRTFYDLV 627

Query: 645 ALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
             V++ RPGPI  D +  +  R+NG+E +      +  +L +T GV ++QEQ MQIA   
Sbjct: 628 IQVAIIRPGPIQGDMVHPFIRRRNGEEAVEFPSDALGAVLGKTLGVPLFQEQAMQIAITG 687

Query: 703 SGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
           +G++  EAD LRR++   K    +   + RFI G   NG     A   F  +  F  YGF
Sbjct: 688 AGFTPEEADQLRRSLATFKKHGSVSDFRTRFIRGMRANGYDLDFAERCFSQIEGFGSYGF 747

Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            +SHAA++A++ Y +AW+K H+P  F  A +  +        +  +DAR+  +++ P  +
Sbjct: 748 PESHAASFALLVYASAWIKCHHPGIFCCALLNAQPMGFYAPAQIVRDAREHGVEVRPVCI 807

Query: 822 NTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
           N    D  +  +      +      ++G+    A  I  A  +  +  +ED   R     
Sbjct: 808 NASYWDNVMEPDGKGGLAVRLGFRQLRGMAEEEAAWITAARGNG-YAVVEDVWRR---SG 863

Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
           ++ R+L  L  A A    G SR + L     I             K   +FA +      
Sbjct: 864 VSPRLLARLAEADAFADLGLSRREALWEARAI----------TGEKPLPLFAGDLDGEGI 913

Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
                 F   +   +   +   +      HP+ + + +L
Sbjct: 914 VEPAAYFPEMSEGEQVVEDFVSMRLTLRSHPIALIRHML 952


>gi|315085031|gb|EFT57007.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL027PA2]
          Length = 1031

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/1027 (27%), Positives = 446/1027 (43%), Gaps = 105/1027 (10%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2    AEAAEACGLSTIIGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTD 56

Query: 119  MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL++ G K      L  L E+      +LTG   G + +       Q AE  L     L
Sbjct: 57   AYLVEGGRKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGMLQ-AEAELRRLVDL 115

Query: 178  F-GDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  D + V L  HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV 
Sbjct: 116  FGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVR 175

Query: 236  HSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                + + D      P   L++ +EM  +FS   +A++NTV +A R +F L     + PR
Sbjct: 176  ARRSLDEMDGWLPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHL---KSVRPR 232

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
              +++  D      + LR+    G         +AK         RL  EL++I    F+
Sbjct: 233  LPDQKVPD-GHTPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDRGFA 283

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV+D +++A+   I +  GRGS A S   YAL IT +DP+ + L FERFL+  R  
Sbjct: 284  GYFLIVSDIVEFAQSQGI-LCQGRGSAAASAVCYALGITVVDPVFYGLPFERFLSVLREE 342

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D 
Sbjct: 343  EPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDA 402

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              + +      P     +  D    E     P       ++Q++ GL RH   H+AG+V+
Sbjct: 403  WSRQMERRSVPP-----LPHDPDGPEIPDDVP------TLAQQVMGLPRHLGIHSAGMVL 451

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q   
Sbjct: 452  TREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCG 511

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPG
Sbjct: 512  RFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPG 571

Query: 654  PIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+       Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD
Sbjct: 572  PVQGGAVHPYIRRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADAD 631

Query: 712  VLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAM  K+  E +D  + +   G + NGI    A  I+  +  FA++GF +SHA ++A
Sbjct: 632  LLRRAMGSKRGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFA 691

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V   +
Sbjct: 692  GLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADL 751

Query: 831  G----------------------------------------------DNRIYYSLAAIKG 844
                                                              +   L+ + G
Sbjct: 752  ELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSG 811

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +   TA  I+E    + F SL+D   RVD        +E+L  AGA D    SR   L  
Sbjct: 812  INIETATRIVEERERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQ 868

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  I   A      +      +                           ++ R  G   +
Sbjct: 869  IGQINGVAPGQLDVQVVTQPPLL----------------PEPTQMELLGDDLRATGISTA 912

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+   +  L + G+   +          I +A +V  +Q+  T  G  + ++   +  
Sbjct: 913  DHPVRQVRDALNRRGVVQVDRLDGVETRRRIEVAGVVTHRQRPGTAGG--VTFLNLEDET 970

Query: 1025 KEYEANF 1031
                   
Sbjct: 971  GLLNVIV 977


>gi|313773082|gb|EFS39048.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL074PA1]
 gi|313810788|gb|EFS48502.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL083PA1]
 gi|313831126|gb|EFS68840.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL007PA1]
 gi|313834194|gb|EFS71908.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL056PA1]
 gi|314975021|gb|EFT19116.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL053PA1]
 gi|314976902|gb|EFT20997.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL045PA1]
 gi|314984774|gb|EFT28866.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL005PA1]
 gi|315081044|gb|EFT53020.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL078PA1]
 gi|315096590|gb|EFT68566.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL038PA1]
 gi|315107677|gb|EFT79653.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL030PA1]
 gi|327327972|gb|EGE69743.1| error-prone DNA polymerase [Propionibacterium acnes HL096PA2]
 gi|327444405|gb|EGE91059.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL043PA1]
 gi|327444584|gb|EGE91238.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL043PA2]
 gi|328762313|gb|EGF75800.1| error-prone DNA polymerase [Propionibacterium acnes HL099PA1]
          Length = 1031

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/1027 (26%), Positives = 445/1027 (43%), Gaps = 105/1027 (10%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2    AEAAEACGLSTIIGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTD 56

Query: 119  MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL++ G K      L  L E+      +LTG   G + +       Q AE  L     L
Sbjct: 57   AYLVEGGRKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGMLQ-AEAELRRLVDL 115

Query: 178  F-GDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  D + V L  HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV 
Sbjct: 116  FGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVR 175

Query: 236  HSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                + + D      P   L++ +EM  +FS   +A++NTV +A R +F L     + PR
Sbjct: 176  ARRSLDEMDGWLPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHL---KSVRPR 232

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
              +++  D      + LR+    G         +AK         RL  EL++I    F+
Sbjct: 233  LPDQKVPD-GHTPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDRGFA 283

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV+D +++A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  R  
Sbjct: 284  GYFLIVSDIVEFAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREE 342

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D 
Sbjct: 343  EPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDA 402

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              + +      P+      D              D +  ++Q++ GL RH   H+AG+V+
Sbjct: 403  WSRQMERRSVPPLPHD--PDGPEIP---------DDVTTLAQQVMGLPRHLGIHSAGMVL 451

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q   
Sbjct: 452  TREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCG 511

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPG
Sbjct: 512  RFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPG 571

Query: 654  PIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+       Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD
Sbjct: 572  PVQGGAVHPYIRRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADAD 631

Query: 712  VLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAM  K+  E +D  + +   G + NGI    A  I+  +  FA++GF +SHA ++A
Sbjct: 632  LLRRAMGSKRGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFA 691

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V   +
Sbjct: 692  GLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADL 751

Query: 831  G----------------------------------------------DNRIYYSLAAIKG 844
                                                              +   L+ + G
Sbjct: 752  ELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSG 811

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +   TA  I+E    + F SL+D   RVD        +E+L  AGA D    SR   L  
Sbjct: 812  INIETATRIVEERERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQ 868

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  I   A      +      +                           ++ R  G   +
Sbjct: 869  IGQINGVAPGQLDVQVVTQPPLL----------------PEPTQMELLGDDLRATGISTA 912

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+   +  L + G+   +          I +A +V  +Q+  T  G  + ++   +  
Sbjct: 913  DHPVRQVRDALNRRGVVQVDRLDGVETRRRIEVAGVVTHRQRPGTAGG--VTFLNLEDET 970

Query: 1025 KEYEANF 1031
                   
Sbjct: 971  GLLNVIV 977


>gi|313763361|gb|EFS34725.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL013PA1]
 gi|313829317|gb|EFS67031.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL063PA2]
 gi|314914584|gb|EFS78415.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL005PA4]
 gi|314918982|gb|EFS82813.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL050PA1]
 gi|314920606|gb|EFS84437.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL050PA3]
 gi|314930402|gb|EFS94233.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL067PA1]
 gi|314956070|gb|EFT00466.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL027PA1]
 gi|314957586|gb|EFT01689.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL002PA1]
 gi|314968599|gb|EFT12697.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL037PA1]
 gi|315098067|gb|EFT70043.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL059PA2]
 gi|315100767|gb|EFT72743.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL046PA1]
 gi|315109377|gb|EFT81353.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL030PA2]
 gi|327452428|gb|EGE99082.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL087PA3]
 gi|327452443|gb|EGE99097.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL083PA2]
 gi|328754927|gb|EGF68543.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL087PA1]
 gi|328759021|gb|EGF72637.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL025PA2]
          Length = 1031

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1027 (26%), Positives = 443/1027 (43%), Gaps = 105/1027 (10%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2    AEAAEACGLSTIIGSELSIGVPE-----PQNGVVDPMGSHLLVLANGPEGYRRLAEALTD 56

Query: 119  MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL++ G K      L  L E+      +LTG   G + +       Q AE  L     L
Sbjct: 57   AYLVEGGRKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVRGMLQ-AEAELRRLVDL 115

Query: 178  F-GDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  D + V L  HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV 
Sbjct: 116  FGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVR 175

Query: 236  HSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                + + D      P   L++ +EM  +FS   +A++NTV +A R +F L     + PR
Sbjct: 176  ARRSLDEMDGWLPPGPVARLRSGAEMADLFSRHRDAVDNTVSVAERTAFHL---KSVRPR 232

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
              +++  D      + LR+    G      +  +AK         RL  ELN+I    F+
Sbjct: 233  LPDQKVPD-GHTPISWLRHLVEEGRRACYGEDPVAK--------DRLATELNLIENRGFA 283

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV+D +++A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  R  
Sbjct: 284  GYFLIVSDIVEFAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREE 342

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D 
Sbjct: 343  EPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDA 402

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              + +      P+                     D +  ++Q++ GL RH   H+AG+V+
Sbjct: 403  WSRQMERRSVPPLPHD-----------PDGSEIPDDVTTLAQQVMGLPRHLGIHSAGMVL 451

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q   
Sbjct: 452  TREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCG 511

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPG
Sbjct: 512  RFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPG 571

Query: 654  PIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+       Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD
Sbjct: 572  PVQGGAVHPYIRRRTGAEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADAD 631

Query: 712  VLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAM  K+  E +D    +   G + NGI    A  I+  +  FA++GF +SHA ++A
Sbjct: 632  LLRRAMGSKRRVERIDSLCTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFA 691

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V   +
Sbjct: 692  GLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADL 751

Query: 831  G----------------------------------------------DNRIYYSLAAIKG 844
                                                              +   L+ + G
Sbjct: 752  ELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSG 811

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +   TA  I+E    + F SL+D   RVD        +E+L  AGA D    SR   L  
Sbjct: 812  ISIETATRIVEERERESFVSLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQ 868

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  I   A      +      +                           ++ R      +
Sbjct: 869  IGQINGVAPGQLDVQVVTQPPLL----------------PEPTQMELLGDDLRATSISTT 912

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+   +  L + G+   +          I +A +V  +Q+  T  G  + ++   +  
Sbjct: 913  DHPVRQVRDALNRRGVVQVDRLDGVEARRRIEVAGVVTHRQRPGTAGG--VTFLNLEDET 970

Query: 1025 KEYEANF 1031
                   
Sbjct: 971  GLLNVIV 977


>gi|313793495|gb|EFS41542.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL110PA1]
 gi|313802915|gb|EFS44126.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL110PA2]
 gi|313839824|gb|EFS77538.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL086PA1]
 gi|314963556|gb|EFT07656.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL082PA1]
 gi|315079143|gb|EFT51148.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL053PA2]
 gi|327455700|gb|EGF02355.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL092PA1]
          Length = 1031

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/1027 (26%), Positives = 445/1027 (43%), Gaps = 105/1027 (10%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2    AEAAEACGLSTIIGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTD 56

Query: 119  MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL++ G K      L  L E+      +LTG   G + +       Q AE  L     L
Sbjct: 57   AYLVEGGRKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGMLQ-AEAELRRLVDL 115

Query: 178  F-GDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  D + V L  HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV 
Sbjct: 116  FGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVR 175

Query: 236  HSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                + + D      P   L++ +EM  +FS   +A++NTV +A R +F L     + PR
Sbjct: 176  ARRSLDEMDGWLPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHL---KSVRPR 232

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
              +++  D      + LR+    G         +AK         RL  EL++I    F+
Sbjct: 233  LPDQKVPD-GHTPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDRGFA 283

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV+D +++A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  R  
Sbjct: 284  GYFLIVSDIVEFAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREE 342

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D 
Sbjct: 343  EPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDA 402

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              + +      P+      D              D +  ++Q++ GL RH   H+AG+V+
Sbjct: 403  WSRQMERRSVPPLPHD--PDGPEIP---------DDVTTLAQQVMGLPRHLGIHSAGMVL 451

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q   
Sbjct: 452  TREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCG 511

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPG
Sbjct: 512  RFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPG 571

Query: 654  PIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+       Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD
Sbjct: 572  PVQGGAVHPYIRRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADAD 631

Query: 712  VLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAM  K+  E +D  + +   G + NGI    A  I+  +  FA++GF +SHA ++A
Sbjct: 632  LLRRAMGSKRGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFA 691

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V   +
Sbjct: 692  GLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADL 751

Query: 831  G----------------------------------------------DNRIYYSLAAIKG 844
                                                              +   L+ + G
Sbjct: 752  ELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSG 811

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +   TA  I+E    + F SL+D   RVD        +E+L  AGA D    SR   L  
Sbjct: 812  INIETATRIVEERERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQ 868

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  I   A      +      +                           ++ R  G   +
Sbjct: 869  IGQINGVAPGQLDVQVVTQPPLL----------------PEPTQMELLGDDLRATGISTA 912

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+   +  L + G+   +          I +A +V  +Q+  T  G  + ++   +  
Sbjct: 913  DHPVRQVRDALNRRGVVQVDRLDGVEARRRIEVAGVVTHRQRPGTAGG--VTFLNLEDET 970

Query: 1025 KEYEANF 1031
                   
Sbjct: 971  GLLNVIV 977


>gi|313814758|gb|EFS52472.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL059PA1]
          Length = 1031

 Score =  697 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1027 (26%), Positives = 442/1027 (43%), Gaps = 105/1027 (10%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2    AEAAEACGLSTIIGSELSIGVPE-----PQNGVVDPMGSHLLVLANGPEGYRRLAEALTD 56

Query: 119  MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL++ G K      L  L E+      +LTG   G + +       Q AE  L     L
Sbjct: 57   AYLVEGGRKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVRGMLQ-AEAELRRLVDL 115

Query: 178  F-GDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  D + V L  HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV 
Sbjct: 116  FGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVR 175

Query: 236  HSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                + + D      P   L++ +EM  +FS   +A++NTV +A R +F L     + PR
Sbjct: 176  ARRSLDEMDGWLPPGPVARLRSGAEMADLFSRHRDAVDNTVSVAERTAFHL---KSVRPR 232

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
              +++  D      + LR+    G      +  +AK         RL  ELN+I    F+
Sbjct: 233  LPDQKVPD-GHTPISWLRHLVEEGRRACYGEDPVAK--------DRLATELNLIENRGFA 283

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV+D +++A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  R  
Sbjct: 284  GYFLIVSDIVEFAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREE 342

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D 
Sbjct: 343  EPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDA 402

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              + +      P+                     D +  ++Q++ GL RH   H+AG+V+
Sbjct: 403  WSRQMERRSVPPLPHD-----------PDGSEIPDDVTTLAQQVMGLPRHLGIHSAGMVL 451

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q   
Sbjct: 452  TREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCG 511

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ IP ++   Y +L    ++G FQ+ES     AL  ++P C  D+   + L RPG
Sbjct: 512  RFWTLASIPRNEPGVYDMLCRGDSIGAFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPG 571

Query: 654  PIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+       Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD
Sbjct: 572  PVQGGAVHPYIRRRTGAEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADAD 631

Query: 712  VLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAM  K+  E +D    +   G + NGI    A  I+  +  FA++GF +SHA ++A
Sbjct: 632  LLRRAMGSKRRVERIDSLCTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFA 691

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V   +
Sbjct: 692  GLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADL 751

Query: 831  G----------------------------------------------DNRIYYSLAAIKG 844
                                                              +   L+ + G
Sbjct: 752  ELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSG 811

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +   TA  I+E    + F SL+D   RVD        +E+L  AGA D    SR   L  
Sbjct: 812  ISIETATRIVEERERESFVSLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQ 868

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  I   A      +      +                           ++ R      +
Sbjct: 869  IGQINGVAPGQLDVQVVTQPPLL----------------PEPTQMELLGDDLRATSISTT 912

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+   +  L + G+   +          I +A +V  +Q+  T  G  + ++   +  
Sbjct: 913  DHPVRQVRDALNRRGVVQVDRLDGVEARRRIEVAGVVTHRQRPGTAGG--VTFLNLEDET 970

Query: 1025 KEYEANF 1031
                   
Sbjct: 971  GLLNVIV 977


>gi|167814068|ref|ZP_02445748.1| error-prone DNA polymerase [Burkholderia pseudomallei 91]
          Length = 848

 Score =  697 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/862 (28%), Positives = 386/862 (44%), Gaps = 49/862 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            R+    L         +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 124 YRLTPRMLAAPPRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLVQ 183

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D     QV        + +VA  +            D + A+     +++     
Sbjct: 184 LQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHAL 243

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 244 APNGEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----HT 297

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D +++
Sbjct: 298 PTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVKY 351

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   R
Sbjct: 352 ARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQR 410

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 411 REEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 470

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             L   A      E     P +    EI+ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 471 DLLARFASVGLDPEV----PLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVE 526

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                   V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 527 NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 586

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
            IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 587 HIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 646

Query: 659 -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 647 VHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 706

Query: 713 LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           LRRAM   K K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A 
Sbjct: 707 LRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAK 766

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
           ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 767 LAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASLE 826

Query: 831 ---------GDNRIYYSLAAIK 843
                    G   +   L+ ++
Sbjct: 827 AQPGAAPPDGRPAVRLGLSLVR 848


>gi|327333237|gb|EGE74959.1| error-prone DNA polymerase [Propionibacterium acnes HL097PA1]
          Length = 1031

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/1027 (26%), Positives = 445/1027 (43%), Gaps = 105/1027 (10%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2    AEAAEACGLSTIIGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTD 56

Query: 119  MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL++ G K      L  L EI      +LTG   G + +       Q AE  L     L
Sbjct: 57   AYLVEGGRKGRPVHDLDHLAEIADGHWTVLTGCRKGAVRQGLVRGMLQ-AEVELRRLVDL 115

Query: 178  F-GDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  D + V L  HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV 
Sbjct: 116  FGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVR 175

Query: 236  HSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                + + D      P   L++ +EM  +FS   +A++NTV +A R +F L     + PR
Sbjct: 176  ARRSLDEMDGWLPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHL---KSVRPR 232

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
              +++  D      + LR+    G         +AK         RL  EL++I    F+
Sbjct: 233  LPDQKVPD-GHTPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDRGFA 283

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV+D +++A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  R  
Sbjct: 284  GYFLIVSDIVEFAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREE 342

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D 
Sbjct: 343  EPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDA 402

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              + +      P+      D              D +  ++Q++ GL RH   H+AG+V+
Sbjct: 403  WSRQMERRSVPPLPHD--PDGPEIP---------DDVTTLAQQVMGLPRHLGIHSAGMVL 451

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q   
Sbjct: 452  TREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCG 511

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPG
Sbjct: 512  RFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPG 571

Query: 654  PIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+       Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD
Sbjct: 572  PVQGGAVHPYIRRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADAD 631

Query: 712  VLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAM  K+  E +D  + +   G + NGI    A  I+  +  FA++GF +SHA ++A
Sbjct: 632  LLRRAMGSKRGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFA 691

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V   +
Sbjct: 692  GLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADL 751

Query: 831  G----------------------------------------------DNRIYYSLAAIKG 844
                                                              +   L+ + G
Sbjct: 752  ELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDNGDHRRDTHFAVRLGLSDVSG 811

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +   TA  I+E    + F SL+D   RVD        +E+L  AGA D    SR   L  
Sbjct: 812  INIETATRIVEERERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQ 868

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  I   A      +      +                           ++ R  G   +
Sbjct: 869  IGQINGVAPGQLDVQVVTQPPLL----------------PEPTQMELLGDDLRATGISTA 912

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+   +  L + G+   +          I +A +V  +Q+  T  G  + ++   +  
Sbjct: 913  DHPVRQVRDALNRRGVVQVDRLDGVETRRRIEVAGVVTHRQRPGTAGG--VTFLNLEDET 970

Query: 1025 KEYEANF 1031
                   
Sbjct: 971  GLLNVIV 977


>gi|158520254|ref|YP_001528124.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3]
 gi|158509080|gb|ABW66047.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3]
          Length = 1003

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/1032 (27%), Positives = 466/1032 (45%), Gaps = 86/1032 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L V S YSL+ G   +  +           +A+TDT+NL+    F        I P++
Sbjct: 2    IPLTVRSGYSLMWGTAPIKEVCRVARQQGYDRLALTDTDNLYGLWHFLDACRRNDITPVV 61

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +L               T   T    VLLV   EGY+ L  L++  +L    K     
Sbjct: 62   GAEL---------------TDPATTDRAVLLVKNPEGYKNLCRLITARHLEPDFK----- 101

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             L        +GL +LT                      L  + +         +  +  
Sbjct: 102  -LETAIARHADGLAVLTRNPC-----------------HLKQWHES-------GVAVYGA 136

Query: 192  YDRYRESQ---VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              R   S    + Q A    +PLVAT  S FLS +D +AH +L A+  +T V +      
Sbjct: 137  MPRRPMSLSSPLCQTARYLNVPLVATPGSFFLSPQDMDAHRMLRAIDLNTTVDRLGPLEA 196

Query: 249  TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             P + +L +  E    F   PEAL NT  ++   +F       ++P +  K   D     
Sbjct: 197  APGEAWLASPREYEKRFEACPEALANTRRLSETLTFTGPEFGLVMPPWESKTGTDPG--- 253

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR  A  G + R  +         +   +RL+ EL++I +M+F+ YFL+V D ++ +
Sbjct: 254  -SALRQAAYRGAQARYGRDL------PEPVARRLEHELSIIIQMRFAAYFLVVQDIVRLS 306

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                 P   GRGSGA S+ AY L IT++ P++ +L FERFLNP R   PD D+DF  D R
Sbjct: 307  -----PRICGRGSGAASLVAYCLRITNVCPIKHNLYFERFLNPGRKDAPDIDVDFAWDER 361

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D V+  V  ++G +  A +     +Q + A+R+V R   +  +++ R+ K +P       
Sbjct: 362  DTVLAAVFERFG-DHCAMVCNHVRMQPRMAVREVARVYGLTEAEISRVTKKMPWFWRQDT 420

Query: 488  S----LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +    L+ +++    R+  L  P    ++ +++K+ G  R+ S H  G++I  RP+ + V
Sbjct: 421  AGLDILRELSERPESRDLDLPAPWPG-IMAVARKICGAPRYLSVHPGGVIITPRPVCEYV 479

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI-P 602
            P+ R  +  + + Q+     E AGL+K D LG ++L +++ ++  L      +D S   P
Sbjct: 480  PVERAAK-GVRIIQWEKDQAEDAGLVKIDLLGNRSLAVIRDAIYNLRSNNHLLDESTWAP 538

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  T   ++   T+G F +ES   R   +  +    E ++   S+ RP   D I  Y 
Sbjct: 539  EDDFATQEAVSQGKTMGCFYIESPATRLLQKKSRVGDFEHLVIHSSIIRPAANDYIQEYL 598

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R +G      IHPL+  +L ET G+++YQE V + A  ++G+S ++AD LR+ M KK K
Sbjct: 599  RRLHG-ASWDPIHPLLADVLDETFGIMVYQEDVSRAAVSVAGFSHADADGLRKVMSKKDK 657

Query: 723  EE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +  +     RF  GA+KNG++      I+ ++  F+ Y F K H+A+YA +S+Q AW+KT
Sbjct: 658  DHVLADFYRRFADGAAKNGVTPEKIREIWRMMMSFSGYSFCKPHSASYARVSFQAAWLKT 717

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP  F+AA ++           +  +AR+  I I+ P VN   + ++   N I   L+A
Sbjct: 718  HYPAAFMAAVIS-NQGGFYSTFAYVSEARRSGITILAPDVNASDIRWQGNGNTIRVGLSA 776

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +  +   T    +       F  LED+  RV   + +    ++L+ +GA D     R + 
Sbjct: 777  VGHLSLKTMEKTLAHRKAARFTGLEDYMDRV---RPDEPEAQALIQSGAFDALCPGRSRS 833

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            +       ++A W           +      T    +       E+   R+  E  VLGF
Sbjct: 834  M----IRWQWACWKNNRPPASSSPLLFD---TAPGPVVPPPQITEDPLERYRQEFSVLGF 886

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
                HP+ +YK  L        +       G  + +A  +++ +  +T+ G  + ++TF 
Sbjct: 887  LCDTHPMTLYKTELEGRQTIKAKHLGRYA-GKRVCVAGWLITGKVVRTKNGDPMEFLTFE 945

Query: 1022 EPAKEYEANFFP 1033
            +    +EA FFP
Sbjct: 946  DETDIFEATFFP 957


>gi|83645018|ref|YP_433453.1| DNA polymerase III subunit alpha [Hahella chejuensis KCTC 2396]
 gi|123767471|sp|Q2SJZ6|DNAE2_HAHCH RecName: Full=Error-prone DNA polymerase
 gi|83633061|gb|ABC29028.1| DNA polymerase III, alpha subunit [Hahella chejuensis KCTC 2396]
          Length = 1032

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/1039 (25%), Positives = 459/1039 (44%), Gaps = 81/1039 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L   S+YS L+GA     ++ +  A     +AITD  ++  A++  ++        
Sbjct: 2    SFVELHCISNYSFLKGASHPEELVRQAIAQGYEGLAITDECSVAGAVKAWRELRRL---- 57

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
                      + +      G          V+L    + Y  L   ++        K   
Sbjct: 58   -----RQEAPEASAFKLIIGSEFHYEGNCFVVLAPHKKAYGELCRFITDCR-RKADKGDY 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            +     L E   +GL++            +    S   ++ +    K+F  RL++ L+  
Sbjct: 112  QFSPDALNENIKQGLLL------------WRPKQSD--QEFIPALTKIFSGRLWLLLELS 157

Query: 190  RGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQKDRPR 247
               +   E +++Q L+  + LP+V++N     + E    HD L A+  +  V S KDR  
Sbjct: 158  LSEEDDSERELIQTLSSAYNLPVVSSNGVKMHAPERKRLHDALTAIRFNQSVDSIKDRLA 217

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               ++YL+  +E+  I+      ++ ++ IA +C+F L       P+ +  E DD     
Sbjct: 218  PNAENYLRPLNEIHEIYPSF--TIQESLRIAAKCAFELNEIRYQYPKEVVPEGDDPSA-- 273

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     G  +R  QG        ++    L+ ELN+I+ +++  YFL + D + +A
Sbjct: 274  --YLRRLTYEGAHLRYPQGI------PENVLATLEKELNIISELQYEYYFLTIFDIVDYA 325

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            KK+ I +  GRGS A SV  Y L IT +DP R SLLFERF++  R   PD D+DF   RR
Sbjct: 326  KKSQI-LCQGRGSAANSVVCYCLGITAVDPTRASLLFERFISKGRDEPPDIDVDFENARR 384

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR-LCKLIPNDPAHP 486
            +EVI+Y+  +YG ER A   T  + + K+A+RD+G+AL +   Q++  +           
Sbjct: 385  EEVIQYLYRRYGRERCAIAATVITYRPKSAIRDLGKALGVDLLQLESVIANYGWRYRGQD 444

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               + I       +    +  +    E+  +L G  RH S H  G V+   PL +LVP+ 
Sbjct: 445  WIDEVIT-----PQVSQDNHILTCFKELLPELLGFPRHLSQHVGGFVLSAGPLVELVPIE 499

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF-D 604
                 D  V Q++   +E  GL+K D L L  LT L+K   ++++  G    L  IP  +
Sbjct: 500  NAAMEDRTVIQWDKDDLESLGLMKVDVLALGMLTALKKCTTYISEITGKTFSLESIPKEE 559

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D + Y +L    T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  Y 
Sbjct: 560  DSQVYDMLQRADTVGLFQVESRAQMNMLPRLRPEKYYDLVVQVAIVRPGPIHGDMVHPYL 619

Query: 663  NRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-K 720
             R++  E       P + P+LK T GV I+QEQV+ IA + +G++  EA+ LRR+M   K
Sbjct: 620  RRRHNLEDPDDVPLPELKPILKRTFGVPIFQEQVIAIAIVGAGFTSEEAEELRRSMASWK 679

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             +  M K  ++ I    K G+       +   +  F +YGF +SHAA++A+++Y + W+K
Sbjct: 680  RRGHMGKLMDKLIINLLKKGVPLEYIQRLCRQIEGFGEYGFPESHAASFALLAYHSGWLK 739

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------- 833
             +YP  F  A +  +        +  QDA++  + ++P  +N    + ++  +       
Sbjct: 740  YYYPSAFCCALLNSQPMGFYAPWQVIQDAQRHGVIVLPVDINNSYWEHRLEPHSDNTKEG 799

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +      +KG+    A  I++   D+ F SL      +   K+NR  LE+L  A AL  
Sbjct: 800  ALRLGFRLVKGLSEEAACSIIQHRTDEGFTSL---VQVMHLPKINREDLEALASANALAS 856

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
             G +R Q          Y Q            +F+  +    D      F   +      
Sbjct: 857  LGENRYQQRWECSGFLYYYQ------------LFSECEYINID------FEPPSRLDNIY 898

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +    G   + HPL   +            E +    G    +A +V+++Q+ KT  G 
Sbjct: 899  EDHSSTGVVLNDHPLAYLREANLTPQCLTAVELLKQKAGLKTYVAGVVINRQRPKTSTG- 957

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + +VT  +         +
Sbjct: 958  -VTFVTLEDETGSINILVW 975


>gi|313812386|gb|EFS50100.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL025PA1]
          Length = 1031

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/1027 (26%), Positives = 445/1027 (43%), Gaps = 105/1027 (10%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2    AEAAEACGLSTIIGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTD 56

Query: 119  MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL++ G K      L  L EI      +LTG   G + +       Q AE  L     L
Sbjct: 57   AYLVEGGRKGRPVHDLDHLAEIADGHWTVLTGCRKGAVRQGLVRGMLQ-AEVELRRLVDL 115

Query: 178  F-GDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  D + V L  HR     R++ ++ +LA  H L  VAT  + +   E +E    L AV 
Sbjct: 116  FGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVR 175

Query: 236  HSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                + + D      P   L++ +EM  +FS   +A++NTV +A R +F L     + PR
Sbjct: 176  ARRSLDEMDGWLPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHL---KSVRPR 232

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
              +++  D      + LR+    G         +AK         RL  EL++I    F+
Sbjct: 233  LPDQKVPD-GHTPISWLRHLVEEGRRACYGDDPVAK--------DRLATELDLIEDRGFA 283

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV+D +++A+   I +  GRGS A S   Y L IT +DP+ + L FERFL+  R  
Sbjct: 284  GYFLIVSDIVEFAQSQGI-LCQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREE 342

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D 
Sbjct: 343  EPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDA 402

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              + +      P+      D              D +  ++Q++ GL RH   H+AG+V+
Sbjct: 403  WSRQMERRSVPPLPHD--PDGPEIP---------DDVTTLAQQVMGLPRHLGIHSAGMVL 451

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q   
Sbjct: 452  TREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCG 511

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPG
Sbjct: 512  RFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPG 571

Query: 654  PIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+       Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD
Sbjct: 572  PVQGGAVHPYIRRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADAD 631

Query: 712  VLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAM  K+  E +D  + +   G + NGI    A  I+  +  FA++GF +SHA ++A
Sbjct: 632  LLRRAMGSKRGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFA 691

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V   +
Sbjct: 692  GLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADL 751

Query: 831  G----------------------------------------------DNRIYYSLAAIKG 844
                                                              +   L+ + G
Sbjct: 752  ELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSG 811

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +   TA  I+E    + F SL+D   RVD        +E+L  AGA D    SR   L  
Sbjct: 812  INIETATRIVEERERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQ 868

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  I   A      +      +                           ++ R  G   +
Sbjct: 869  IGQINGVAPGQLDVQVVTQPPLL----------------PEPTQMELLGDDLRATGISTA 912

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+   +  L + G+   +          I +A +V  +Q+  T  G  + ++   +  
Sbjct: 913  DHPVRQVRDALNRRGVVQVDRLDGVETRRRIEVAGVVTHRQRPGTAGG--VTFLNLEDET 970

Query: 1025 KEYEANF 1031
                   
Sbjct: 971  GLLNVIV 977


>gi|296270533|ref|YP_003653165.1| DNA polymerase III subunit alpha [Thermobispora bispora DSM 43833]
 gi|296093320|gb|ADG89272.1| DNA polymerase III, alpha subunit [Thermobispora bispora DSM 43833]
          Length = 1155

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1073 (25%), Positives = 477/1073 (44%), Gaps = 92/1073 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL   S+YS   G    + +  + A      +A+TD + L+  ++  +   A GI P
Sbjct: 3    PFTHLHTASAYSFRYGTAFPDALARRAAEHGMDMLALTDRDGLYGVIKHVRACHARGIAP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G     D+        +G+        IV+L  +  G+  L  LV+  +     +   
Sbjct: 63   IAGV----DLALGPARPERGRGSGADGERIVVLARSG-GWAALCRLVTAAHRR---RGEP 114

Query: 130  RICLSWLQEIGT-----EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    + E          L +L G  +  + RA      + A   L  ++    D +  
Sbjct: 115  YVTRETVAEHAAGPGGEPLLTVLLGP-ASDVGRAVAERRDRQAAALLHAWRSAVPDVVVE 173

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                +   D    ++++ LA    +P V +N   +L   D++  +VL A      +  + 
Sbjct: 174  VADLYGHRDANTAARMIGLADATGVPAVLSNTVRYLDAADHQVGNVLDAARKRVPLHPRH 233

Query: 245  RPRVTPDHYLKNRSEMVSIF--------SDLPEALENTVEIARRCSFI----LQVHAPIL 292
                T   YLK+ +EM  +               L  T  +A RC       + +  P+ 
Sbjct: 234  IDHPTAHAYLKDSTEMAWVALRICGGDRDRAGRLLAETRRVAERCVLDPVEIVPLLDPVR 293

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            PR    E D    +    LR++   GL  R           + + R+RL  EL++I R  
Sbjct: 294  PRLHLPEVDG---DPVRRLRHRCEEGLAARGL-------ARSAEARRRLAAELSIIERKG 343

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
             SGYFL VA      +   I     RGSGAG +  Y + I +++PL   LL ERFL+  R
Sbjct: 344  LSGYFLAVAGITDMIRSMGIRCAI-RGSGAGCLVNYLIGIGEVNPLDHGLLMERFLSEGR 402

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
              +PD DID    RR +  R + ++YG  R+A +    + +A++A+RDVG A+ +P  ++
Sbjct: 403  KGLPDIDIDVESARRLDCYRAILDRYGEARMACVSMVETYRARSAIRDVGAAMGLPPHEI 462

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            D + K  P+  A  +   A++D    R + L D ++  +  I+++L+GL RH + H  G+
Sbjct: 463  DVIVKAFPHIRAGQIRA-ALSDLPELRGSGLNDRALQTVFRIAERLDGLPRHIAMHPCGV 521

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
            +IG+  L    P+        P++QF+   +E AGL+K D LG++  + L  ++  + + 
Sbjct: 522  LIGNSGLRDRTPVE-PSMLGFPMSQFDKDDVEDAGLLKLDVLGVRMQSALAYAVREVERV 580

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             G ++DL  +P DD ET+ L+    TLG FQ+ES G R+ +  ++P  + D+I  +SL+R
Sbjct: 581  DGRRIDLDAVPRDDPETFDLICAGRTLGCFQIESPGQRELVGKLEPRTMHDLIVDISLFR 640

Query: 652  PGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP   D +  Y   ++G       H  +   L+ET GV+I+ EQV+++  +++G  LSE
Sbjct: 641  PGPVNSDMVTPYLEARHGFRAPSYPHEDLREALRETHGVVIFHEQVLRVIDIMTGCGLSE 700

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            A+  RRA+     E  ++ +  F+  A K G  +     ++  +  F  +GF K+HAAA+
Sbjct: 701  AERARRALDT--PEGREEVRAWFVPLARKKGYGEETIERVWRTIDAFGAFGFCKAHAAAF 758

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+ +YQ+AW+K H+P  F A  +T E   +   +    +ARQ  +Q++P  VN     + 
Sbjct: 759  ALPTYQSAWLKRHHPAAFFAGVLTHEP-GMYPNRAIIDEARQCGVQVLPLDVNRSGKTWL 817

Query: 830  VGDNRI-----------------YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            V                          +A+KGV       ++   A +P+ SL DF  R 
Sbjct: 818  VERTGPPAEGRDGIAAIGRGYGVRVPFSAVKGVSEAEVDRMV---AGRPYTSLADFWERA 874

Query: 873  DSKKLNRRVLESLVFAGALDCFG-------------YSRMQLLQSLDNIQKYAQWVEKNR 919
               + +R V E +V  G  D                 +R  L+  +  +++ +       
Sbjct: 875  ---RPSRPVAERIVAVGGFDSIYGLRPGEPRWRPGRLTRRDLIAQVGALERAS-----AG 926

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                  +       F+++IT  +      +   E E  +LG   S H +  ++ +L  +G
Sbjct: 927  ATGQLPM------GFTERITPGELPEMTEAEAVEAELEILGMDVSRHVIGFHRDLLEAIG 980

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   ++ ++   G  + +A   V+ Q    R G RI + T  +     +  FF
Sbjct: 981  VTWAKDLLSRRNGAEVVVAGAKVATQTPAVRSGQRIIFTTLDDSTGPIDLTFF 1033


>gi|167901170|ref|ZP_02488375.1| error-prone DNA polymerase [Burkholderia pseudomallei NCTC 13177]
          Length = 843

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/842 (28%), Positives = 380/842 (45%), Gaps = 39/842 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            R+    L         +        I    +   + V + +L  F  LFG+R  + L Q
Sbjct: 124 YRLTPRMLAAPPRALAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLVQ 183

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D     QV        + +VA  +            D + A+     +++     
Sbjct: 184 LQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHAL 243

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L+ R  +  +F    +AL  T  +   C F L       P  I          
Sbjct: 244 APNGEQHLRTRQRIAQLFP--ADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----HT 297

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D +++
Sbjct: 298 PTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVKY 351

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A+  +I +  GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   R
Sbjct: 352 ARSKDI-LCQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQR 410

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K         
Sbjct: 411 REEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSR 470

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             L   A      E     P +    EI+ +L    RH S H+ G V+    L++LVP+ 
Sbjct: 471 DLLARFASVGLDPEV----PLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVE 526

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLS 599
                   V Q++   +E  GL+K D L L  L+ L ++ D +               L 
Sbjct: 527 NAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLE 586

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
            IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    
Sbjct: 587 HIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGA 646

Query: 659 -VVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              Y  R+         +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD 
Sbjct: 647 VHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADA 706

Query: 713 LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           LRRAM   K K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A 
Sbjct: 707 LRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAK 766

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
           ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 767 LAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASLE 826

Query: 832 DN 833
             
Sbjct: 827 AQ 828


>gi|297161682|gb|ADI11394.1| DNA polymerase III, alpha subunit [Streptomyces bingchenggensis
            BCW-1]
          Length = 1240

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/1134 (25%), Positives = 461/1134 (40%), Gaps = 135/1134 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL   S +S+  GA+    +    A     AIA+TD ++L  A+ F++   AAG++
Sbjct: 2    PGFTHLHTASGFSMRYGAVHPERLAQCAAERGMDAIALTDRDSLAGAVRFAKAGAAAGVR 61

Query: 69   PII--------GCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRM 119
            P+                          G     + P  + L    A G+  L  LVS  
Sbjct: 62   PLFGVDLAVQARAPEPGRTVRRRTPVRGGAFIDESAPRAVFLARGGAAGWAALCGLVSAA 121

Query: 120  YLLD-----------------------QGKQSVRICLSWLQEIGTEG-------LIMLTG 149
            +  +                        G     +  + L++  + G       L +L G
Sbjct: 122  HAGEAPAGAHSGPDAGTHAGTRSGARAGGAGQPLLHWADLEDGASGGGATALAPLTVLLG 181

Query: 150  GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR----GYDRYRES-QVVQLA 204
              S  + RA        AE  +  +++LFGD L +    H     G    R + + V  A
Sbjct: 182  PDS-DVGRALAAGRPDRAEHLIAPWRELFGDALRLEAVWHGRTGTGPGSLRLAARTVGFA 240

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSI 263
                +  V +N   +         DVL A      +  +D   + + + +LK   +M  I
Sbjct: 241  ADQGVRAVLSNAVRYADPGQGPVADVLDAARRLVPIDPRDPAALDSGERWLKGPQDMARI 300

Query: 264  FSDLPEA-----------LENTVEIARRCSFILQVHAPILP-RFIEKECDDIQKEEENEL 311
               + EA           LE T   A  C    + H  +    F E              
Sbjct: 301  AEKIAEAAGRRRDAAHRLLEETERTAAACLVDPEDHIGLGSIHFPEPHLVGAGH------ 354

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQ-DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
               A   L  R A   + +GY    +   RL+ EL  I R+ F+ YFL VA  +   +  
Sbjct: 355  -RSAERVLRSRCAAAMVLRGYDRDHERWGRLEDELRTIERLGFASYFLTVAQVVDDTRAL 413

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I V   RGSGAGS   + L I   DP+   LL ERFL+  R ++PD DID    RR EV
Sbjct: 414  GIRVA-ARGSGAGSFVNHLLGIAHADPVANGLLMERFLSVRRAALPDIDIDVESARRLEV 472

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
             R + +++G ERVA +    + + + A+RDVG AL M  ++VDRL K  P+  A      
Sbjct: 473  YRTIFDRFGAERVATVSMPETYRVRHAVRDVGAALGMDPAEVDRLAKSFPHIRARDARA- 531

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A+A+               RL E+ + L+GL R  + H  G+++ D  L    P+     
Sbjct: 532  ALAELPELSAVAAEQKRYGRLWELVEALDGLPRGIAMHPCGVLLSDAGLRARTPVVPTSG 591

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP---FDDH 606
               P++QF+   +E  GL+K D LG++  + +  +   +A+  G  +DL        +D 
Sbjct: 592  EGFPMSQFDKDDVEDLGLLKLDVLGVRMQSSMAHAAAEVARVTGRPLDLDDPEVVRPNDP 651

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNR 664
             TY L+ +  TLG FQ+ES G R  L  +QP    D++  +SL+RPGP+  D +  +   
Sbjct: 652  ATYDLIRSTETLGCFQIESPGQRDLLGRLQPTSFHDLVVDISLFRPGPVAADMVRPFIEA 711

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++G++     HP ++  L+ET GV+++ EQ+++I  +++G     AD  RRA+     E 
Sbjct: 712  RHGRKPPRYPHPDLEDALRETYGVVVFHEQIIKILSIMAGCERDLADEARRALS--DPER 769

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
              + +  F + A+  G    + +  +E++  F  YGF K+HA A+AV +YQ+AW+K H+P
Sbjct: 770  QGRVRAWFHAEAANRGYRPEVRLRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHP 829

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------------- 831
              F A  +T +     K +    DAR+  + I+P  VN    D+++              
Sbjct: 830  AAFYAGVLTHDPGMYPK-RLLLADARRRGVPILPLDVNRSGADYRIELVSGDGVSAAGAA 888

Query: 832  --------------------------------DNRIYYSLAAIKGVGTTTARHIMEASAD 859
                                               +  +L+ + G+       I    A 
Sbjct: 889  GTGPMGVSSTDAGSTAAGSTAADSVGAGSTGAGFGVRLALSDVHGISEAETGRIA---AG 945

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
            +P+ SL+D   R       R V E L   GALD FG SR  LL  +  + +  +   ++ 
Sbjct: 946  QPYSSLQDLWRRAH---PGRPVAERLAQVGALDAFGTSRRDLLLQIAELHRQQRGARRDG 1002

Query: 920  T-NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
            T      +        +           N   R   E  +LG   S H +  ++  L ++
Sbjct: 1003 TGEGQLPL------AETAPPAPAGLPDLNPEERLGAELGILGMDVSRHLMGDHRAFLEEL 1056

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            G    +       G  + +A    + Q    R G R+ + T  +     +  FF
Sbjct: 1057 GAVPAKRLRDARHGETVLVAGAKAATQTPPIRSGRRVIFTTLDDGTGLVDCAFF 1110


>gi|302023511|ref|ZP_07248722.1| DNA polymerase III DnaE [Streptococcus suis 05HAS68]
          Length = 1036

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/1025 (28%), Positives = 502/1025 (48%), Gaps = 102/1025 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + Y+ ++  +++ N + +       A+ I D N+L++A  F +     G+QPII
Sbjct: 3    AQLDTKTVYTFMDSMVTIENYVGRAKELGYHALGIMDKNSLYAAYSFMESCNKMGLQPII 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+LD  +Q+                +  L+  T  GY+ L++ +S   ++ Q       
Sbjct: 63   GCELDWKLQEG-----------EQDVTTQLIALTTRGYRNLLK-ISTAKMIGQ------D 104

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                +++   +  I +       I+                      G   Y+ +     
Sbjct: 105  DFETIRQYLVD--IAVVVPYFSGIEHLEL------------------GVNYYIGVTVDTP 144

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
               ++++            ++  +   F  EE  E+  VL A+  +  ++Q     +   
Sbjct: 145  VQDFKQA------------ILPIHTVRFFEEEQLESLQVLHAIRDNIPLNQV--VDIDSR 190

Query: 252  HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              L +   + ++FS   P+A++N  ++    S+ L      LPRF      +  +    E
Sbjct: 191  QKLLSADSLTNLFSNRFPQAVDNLRDLVAGISYQLNTDL-KLPRF------NRDRPAVEE 243

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L  ++  GLE         KG     Y++RL+ EL++I +M F  YFLIV D +++ +  
Sbjct: 244  LYERSYQGLEE--------KGLTNSLYKERLEKELSIIHQMGFDDYFLIVWDLLRFGRSQ 295

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R SMPD DID     R + 
Sbjct: 296  GYYMGMGRGSAVGSLVAYALNITGIDPVKHNLLFERFLNAERYSMPDIDIDIPDIHRADF 355

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV+++YG    AQI+T+ +  AK A+RDV +    P  ++  + K I    +      
Sbjct: 356  IRYVRDRYGSTHAAQIVTYSTFGAKQAIRDVFKRFGTPEYELSNITKKISFRDSLT---S 412

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   ++ FR+   +     +   I+Q++EG  R  S HAAGIV+ D  L+  +P+   + 
Sbjct: 413  AYQRNAAFRQIINSKIEYQKAFAIAQQIEGQPRQTSIHAAGIVMSDEDLTDTIPL--KIG 470

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETY 609
             D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + + +R  + +D++ I  +D +T 
Sbjct: 471  DDMLVTQYDAHAVEANGLLKMDFLGLRNLTFVQKMAEGVRERYQQEIDIAKIDLEDKKTL 530

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E  G    L  ++P   EDI+A  SL RPG  D    +  RK+G+E
Sbjct: 531  ELFAAGRTKGIFQFEQPGAISLLRRVKPGRFEDIVATTSLNRPGASDYSDNFVKRKHGQE 590

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +  + P I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM   +
Sbjct: 591  TVDLLDPTIAPILQPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNAQEMQVME 650

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F+ GA KNG ++  A  IF ++AKFA YGFN+SHA AY+ +++Q A+ K+HY   F  
Sbjct: 651  AEFLQGALKNGHAEENAREIFGMVAKFAGYGFNRSHAYAYSALAFQMAYFKSHYTDVFFD 710

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            + +DA QF+ ++   ++N      K   +++Y  L  +KG+    
Sbjct: 711  VMLNHSSG------AYIEDAMQFDFEVARLTINNIPYHDKFDKSKVYLGLKTLKGLPKDL 764

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I++     P+ S+EDF  R+      + +L  L+  G  D F  +R +++++LDN+ 
Sbjct: 765  ALWILDHR---PYKSVEDFILRLPDNFKKKDLLIPLIQIGLFDDFVANRKKIIENLDNLF 821

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +A+ +           FA E  +++D          + S +F  EQ +LG   S HPL 
Sbjct: 822  VFAEAI--------GTFFAEESYSWTD------VEDYSDSEKFMLEQELLGVGISPHPL- 866

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYE 1028
                 + +   + + +      GN   +   + + +  +T+K G ++ ++  ++  +  +
Sbjct: 867  ---VNICRESKRSFTDLADLAVGNRATVLVQIQAIRLIRTKKTGEQMAFLRVTDTKRTLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|223932493|ref|ZP_03624494.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
 gi|330833069|ref|YP_004401894.1| DNA polymerase III subunit alpha [Streptococcus suis ST3]
 gi|223898764|gb|EEF65124.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
 gi|329307292|gb|AEB81708.1| DNA polymerase III alpha subunit [Streptococcus suis ST3]
          Length = 1036

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/1025 (28%), Positives = 502/1025 (48%), Gaps = 102/1025 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + Y+ ++  +++ N + +       A+ I D N+L++A  F +     G+QPII
Sbjct: 3    AQLDTKTVYTFMDSMVTIENYVGRAKELGYHALGIMDKNSLYAAYSFMESCNKMGLQPII 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+LD  +Q+                +  L+  T  GY+ L++ +S   ++ Q       
Sbjct: 63   GCELDWKLQEG-----------EQDVTTQLIALTTRGYRNLLK-ISTAKMIGQ------D 104

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                +++   +  I +       I+                      G   Y+ +     
Sbjct: 105  DFETIRQYLVD--IAVVVPYFSGIEHLEL------------------GVNYYIGVTVDTP 144

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
               ++++            ++  +   F  EE  E+  VL A+  +  ++Q     +   
Sbjct: 145  VQDFKQA------------ILPIHTVRFFEEEQLESLQVLHAIRDNIPLNQV--VDIDSR 190

Query: 252  HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              L +   + ++FS   P+A++N  ++    S+ L      LPRF      +  +    E
Sbjct: 191  QKLLSADSLTNLFSNRFPQAVDNLRDLVAGISYQLNTDL-KLPRF------NRDRPAVEE 243

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L  ++  GLE         KG     Y++RL+ EL++I +M F  YFLIV D +++ +  
Sbjct: 244  LYERSYQGLEE--------KGLTNSLYKERLEKELSIIHQMGFDDYFLIVWDLLRFGRSQ 295

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R SMPD DID     R + 
Sbjct: 296  GYYMGMGRGSAVGSLVAYALNITGIDPVKHNLLFERFLNAERYSMPDIDIDIPDIHRADF 355

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV+++YG    AQI+T+ +  AK A+RDV +    P  ++  + K I    +      
Sbjct: 356  IRYVRDRYGSTHAAQIVTYSTFGAKQAIRDVFKRFGTPEYELSNITKKISFRDSLT---S 412

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   ++ FR+   +     +   I+Q++EG  R  S HAAGIV+ D  L+  +P+   + 
Sbjct: 413  AYQRNAAFRQIINSKIEYQKAFAIAQQIEGQPRQTSIHAAGIVMSDEDLTDTIPL--KIG 470

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETY 609
             D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + + +R  + +D++ I  +D +T 
Sbjct: 471  DDMLVTQYDAHAVEANGLLKMDFLGLRNLTFVQKMAEGVRERYQQEIDIAKIDLEDKKTL 530

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E  G    L  ++P   EDI+A  SL RPG  D    +  RK+G+E
Sbjct: 531  ELFAAGRTKGIFQFEQPGAISLLRRVKPGRFEDIVATTSLNRPGASDYSDNFVKRKHGQE 590

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +  + P I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM   +
Sbjct: 591  TVDLLDPTIAPILQPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNAQEMQVME 650

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F+ GA KNG ++  A  IF ++AKFA YGFN+SHA AY+ +++Q A+ K+HY   F  
Sbjct: 651  AEFLQGALKNGHAEENAREIFGMVAKFAGYGFNRSHAYAYSALAFQMAYFKSHYTDVFFD 710

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            + +DA QF+ ++   ++N      K   +++Y  L  +KG+    
Sbjct: 711  VMLNHSS------SAYIEDAMQFDFEVARLTINNIPYHDKFDKSKVYLGLKTLKGLPKDL 764

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I++     P+ S+EDF  R+      + +L  L+  G  D F  +R +++++LDN+ 
Sbjct: 765  ALWILDHR---PYKSVEDFILRLPDNFKKKDLLIPLIQIGLFDDFVANRKKIIENLDNLF 821

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +A+ +           FA E  +++D          + S +F  EQ +LG   S HPL 
Sbjct: 822  VFAEAI--------GTFFAEESYSWTD------VEDYSDSEKFMLEQELLGVGISPHPL- 866

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYE 1028
                 + +   + + +      GN   +   + + +  +T+K G ++ ++  ++  +  +
Sbjct: 867  ---VNICRESKRSFTDLADLAVGNRATVLVQIQAIRLIRTKKTGEQMAFLRVTDTKRTLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|317496209|ref|ZP_07954569.1| DNA polymerase III [Gemella moribillum M424]
 gi|316913784|gb|EFV35270.1| DNA polymerase III [Gemella moribillum M424]
          Length = 1092

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/1037 (30%), Positives = 536/1037 (51%), Gaps = 78/1037 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++ +LQVHS+Y LL   +    + +K+ +D Q ++ I D  N++ A++  ++A   GI  
Sbjct: 2    AYYNLQVHSAYDLLNSTIKYKELFEKLKSDNQDSVVIVDP-NMYGAIKAYKEAKKTGINL 60

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G ++ +    +    N             +L      + +L EL +R   L++ + S+
Sbjct: 61   ISGLEVKLGYGISFLTFN-------------ILCKNERMFHKLFELSTR--FLNEEELSL 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               L+ +++   + ++++T      I+ ++         ++L+ +   FG     N   +
Sbjct: 106  EAFLAEIKDFKDDFVLIVTSELRDSIEFSYLQ-------EQLIGYDFYFGFNEKFNYSIY 158

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              YD                 +V T  S +L+++ Y+   V  A+  +T ++ ++     
Sbjct: 159  TYYD----------------NIVYTKPSYYLNKDHYQQVVVARAIRDNTKLNIRELTTTI 202

Query: 250  PDHYLKNRSEMV-------SIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             DH++++  +           +   L ++L+N   I  +C + L+     LP++I  E +
Sbjct: 203  GDHFVRSVQDFSLLLESDNEEYIFMLQKSLDNQQRIIDKCHYELEFSGYHLPKYIYGEHE 262

Query: 302  DI--QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            D+  +   ++ LR     G + +L       G     Y++R ++EL +I  M F+ YFLI
Sbjct: 263  DVFAKMSAKDYLRYLVQKGAKEKLV------GKDYYAYKKRYEYELKIIDDMGFNDYFLI 316

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DF+++AK N I VG GRGS AGS+  Y L IT+ DPL ++LLFERFLN +R+SMPD D
Sbjct: 317  VYDFVKYAKDNGILVGAGRGSAAGSLVCYLLNITEADPLEYNLLFERFLNKERISMPDID 376

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDF   RRDEVI+YV+ KYG ++VAQIITF + Q+K+A R+  R LQ     +    K I
Sbjct: 377  IDFQDTRRDEVIKYVEGKYGEDKVAQIITFTTFQSKSAARETARILQFNEEDL----KFI 432

Query: 480  PNDPAHPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR- 537
             ++ +   +L    + S   R          R   I+  LE L ++ S HAAGIVI D  
Sbjct: 433  SSNVSSTRTLTECYEVSENLRNFVNKSDLNRRWFSIALSLEELPKNPSVHAAGIVISDDK 492

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            PL +  P+         +TQ+ M  +E  GL+K DFLG++ LT++   ++ + +     D
Sbjct: 493  PLIKHTPLA-ASNVTKYLTQWTMDDVESVGLLKIDFLGIRYLTMVSNIVEQIKKDNPSFD 551

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ I + D + Y+L T   T GIFQ ESSGM++ L  ++P    DI+A+ +LYRPGP+  
Sbjct: 552  ITKINYADQKVYNLFTQGRTEGIFQFESSGMKEKLRLLRPTEFNDIVAMNALYRPGPMAQ 611

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y  RK+G+EK+V  HP ++ +L++T GVI+YQEQ+M IA   +  SL+EAD +RRA+
Sbjct: 612  IETYVRRKHGEEKVVYPHPHLEKILRDTYGVIVYQEQIMLIAVNFAHMSLNEADNMRRAV 671

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             KK KE+++     FI  +   G    IA  +F+L+  FA+YGFNKSHA  Y++++Y+ A
Sbjct: 672  SKKKKEDLEYYGRIFIEKSVAAGYDLNIAKKLFDLIVTFANYGFNKSHAVVYSMLAYRLA 731

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +Y   F+ A +   + + +KI ++ Q+     I +  P VN    DF V    I +
Sbjct: 732  YLKVYYTKYFMTALLNNVISSEKKINEYKQELNNLGITLAKPDVNVSLSDFSVYKQDIVF 791

Query: 838  SLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            +L AIK VG  ++  I++   +   +  ++DF  R++ KK++ +  +SLV AGALD FGY
Sbjct: 792  ALTAIKNVGYRSSYEIVQDRLNFGKYQDIDDFLKRMN-KKVDYQAAQSLVKAGALDTFGY 850

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  L+     ++ Y +   K   N    + A    T    + +E+      + + + E+
Sbjct: 851  NRATLM---KKVKDYYEDDRKYINNVRVALSAESGLT----LKVEEVEDYPIAEKIQMEK 903

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             V G YF  HP+ V K    K            +  + + +      K +K       + 
Sbjct: 904  EVTGTYFLKHPVQVEKE---KYAYLPLRYIGRDVSDSYVEVITKKEIKTKKG----EYMA 956

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++T ++   +Y+   FP
Sbjct: 957  FLTVNDGKNDYDVTVFP 973


>gi|146318196|ref|YP_001197908.1| DNA polymerase III DnaE [Streptococcus suis 05ZYH33]
 gi|145689002|gb|ABP89508.1| DNA polymerase III, alpha subunit [Streptococcus suis 05ZYH33]
          Length = 1036

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/1025 (28%), Positives = 500/1025 (48%), Gaps = 102/1025 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + Y+ ++  +++ + + +       A+ I D N+L++A  F +     G+QPII
Sbjct: 3    AQLDTKTVYTFMDSMVTIESYVGRAKELGYHALGIMDKNSLYAAYSFMESCNKMGLQPII 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC         L    QG+    T     L+  T  GY+ L+++ +        K + + 
Sbjct: 63   GC--------ELDWKLQGEEQDITT---QLIALTTRGYRNLLKISTA-------KMTGQD 104

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                +++   +  I +       I+                      G   Y+ +     
Sbjct: 105  DFETIRQYLVD--IAVVVPYFSGIEHLEL------------------GVNYYIGVTVDTP 144

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
               ++++ +              +   F  EE  E+  VL A+  +  ++Q     V   
Sbjct: 145  VQDFKQAPL------------PIHTVRFFEEEQLESLQVLHAIRDNIPLNQV--SDVDSR 190

Query: 252  HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              L +   + ++FS   P+A++N  ++    S+ L      LPRF      +  +    E
Sbjct: 191  QKLLSADSLTNLFSNRFPQAVDNLRDLVAGISYQLNTDL-KLPRF------NRDRPAVEE 243

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L  ++  GLE         KG     Y++RL+ EL++I +M+F  YFLIV D +++ +  
Sbjct: 244  LYERSYQGLEE--------KGLTNSLYKERLEKELSIIHQMEFDDYFLIVWDLLRFGRSQ 295

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R SMPD DID     R + 
Sbjct: 296  GYYMGMGRGSAVGSLVAYALNITGIDPVKHNLLFERFLNAERYSMPDIDIDIPDIHRADF 355

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV+++YG    AQI+T+ +  AK A+RDV +    P  ++  + K I    +      
Sbjct: 356  IRYVRDRYGSTHAAQIVTYSTFGAKQAIRDVFKRFGTPEYELSNITKKISFRDSLT---S 412

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   ++ FR+   +     +   I+Q++EG  R  S HAAGIV+ D  L+  +P+   + 
Sbjct: 413  AYQRNAAFRQIINSKIEYQKAFAIAQQIEGQPRQTSIHAAGIVMSDEELTDTIPL--KIG 470

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETY 609
             D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + + +R  + +D++ I  +D +T 
Sbjct: 471  DDMLVTQYDAHAVEANGLLKMDFLGLRNLTFVQKMAEGVRERYQQEIDIAKIDLEDKKTL 530

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E  G    L  ++P   EDI+A  SL RPG  D    +  RK+G+E
Sbjct: 531  ELFAAGRTKGIFQFEQPGAISLLRRVKPGRFEDIVATTSLNRPGASDYSDNFVKRKHGQE 590

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +  + P I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM   +
Sbjct: 591  TVDLLDPTIAPILQPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNAQEMQAME 650

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F+ GA KNG ++  A  IF ++AKFA YGFN+SHA AY+ +++Q A+ K+HY   F  
Sbjct: 651  AEFLQGALKNGHAEENAREIFGMMAKFAGYGFNRSHAYAYSALAFQMAYFKSHYTDVFFD 710

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            + +DA QF+ ++   ++N      K   +++Y  L  +KG+    
Sbjct: 711  VMLNHSS------SAYIEDAMQFDFEVARLTINNIPYHDKFDKSKVYLGLKTLKGLPKDL 764

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I++     P+ S+EDF  R+      + +L  L+  G  D F  +R +++++LDN+ 
Sbjct: 765  ALWILDHR---PYKSVEDFILRLPDNFKKKDLLIPLIQIGLFDDFDANRKKIIENLDNLF 821

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +A+ +           FA E  +++D          + S +F  EQ +LG   S HPL 
Sbjct: 822  VFAEAI--------GTFFAEESYSWTD------VEDYSDSEKFMLEQELLGVGISPHPL- 866

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYE 1028
                 + +   + + +      GN   +   + + +  +T+K G ++ ++  ++  +  +
Sbjct: 867  ---VNICRESKRSFTDLADLAVGNRATVLVQIQAIRLIRTKKTGEQMAFLRVTDTKRTLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|254385261|ref|ZP_05000592.1| DNA polymerase III alpha subunit [Streptomyces sp. Mg1]
 gi|194344137|gb|EDX25103.1| DNA polymerase III alpha subunit [Streptomyces sp. Mg1]
          Length = 1170

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/1061 (24%), Positives = 456/1061 (42%), Gaps = 69/1061 (6%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL V S YS   GA    +++ +        +A+TD + +  A+ F++ A AAGI+P+ 
Sbjct: 24   VHLHVASGYSARYGASHPRDLVRRATERGIGTLALTDRDTVTGAVRFAKAATAAGIRPVF 83

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPT---------VPSIVLLVSTAEGYQRLIELVSRMYLL 122
            G  + +      +  +  +   P             + LL  +  G+ RL  LVS  +  
Sbjct: 84   GVDVAVAPHTPARPGSTIRPRTPVRGGAHVVEPPLRVTLLARSTAGWARLCRLVSDAH-A 142

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            D       +    L     E L++L G  S    RA       +AE  +  ++++ G  L
Sbjct: 143  DAAGALPVVSWETLGRYADEDLVVLLGPVS-EPARALSAGRPDLAEHLIAPWREMAGANL 201

Query: 183  YVNLQRHR----GYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +          G    R + + + LA    +  V TN   +     +   DVL A    
Sbjct: 202  RLETVCWGVPGTGPGSLRLAARTIGLADQLGVRAVLTNAVRYADPAQHRIADVLDAGRLL 261

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARRCSFILQ 286
              + ++       + +LK+ + M +    + EA           L  TV     C     
Sbjct: 262  RPIDRRRLDC--GERWLKDPAAMQAAAERIAEASGADSGRAAALLAETVRAGEECVLDPV 319

Query: 287  VHAPI-LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR-QRLDFE 344
                +  PRF E E    +      +R      L  R   G  A+G        ++L++E
Sbjct: 320  ADLGLGTPRFPEPEVVGAEPGPGGAMRL-----LRQRCETGMFARGLDRDRRAVEQLEYE 374

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L VI ++++  YFL VA  +   +   I V   RGSGAGS+  +AL +   +PL   LLF
Sbjct: 375  LGVIGKLEYEAYFLAVAQVVADVRAMGIRVA-ARGSGAGSMVNHALFVATANPLDHDLLF 433

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFL+  R S+PD D+D    RR EV   +  ++G +RVA      + +A+ ALRD G A
Sbjct: 434  ERFLSERRSSLPDIDVDVESARRLEVYDRIIERFGTDRVAVTGMPETYRARHALRDTGLA 493

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L +    VDR+ K  P+  A  +   A+      ++      S   L E+++ L+ L R 
Sbjct: 494  LGIAPQVVDRIAKSFPHIRACDIR-DALTTLPELKQLAAEAGSFGPLWELAEGLDKLPRG 552

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             + H  G+++ +  L   +P+        P+ Q + + +E  GL+K D LG++  + +  
Sbjct: 553  IAMHPCGVILSNASLLDRLPVQPTPGGQYPMVQADKEDVEDLGLLKLDVLGVRMQSAMAH 612

Query: 585  SLDFLAQR----GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++  + +         +   +P  D   + L+    T+G+FQLES G +  +  +QP  +
Sbjct: 613  AVKEVRRTSGRQIDLDNPDHVPLGDPGAFDLIRKSDTIGMFQLESPGQQDLVGRLQPRDV 672

Query: 641  EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            +D+IA +SL+RPGP+   +   Y   ++G       HP + P+L  T GV I+ EQ++ +
Sbjct: 673  QDVIADISLFRPGPVKGGMPALYIAARHGAAP-QYPHPDLVPVLSSTYGVTIWHEQIIDM 731

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
              +L+G   + A+V RRA+     E + + +  F   A   G S+ +   ++E++  F  
Sbjct: 732  FAVLTGCDRALAEVARRALA--NGERLPQVEAWFKGEAGGRGYSRAVLDEVWEIIKGFGA 789

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGF ++HA A+AV + Q+AW+K H+P    A  +  +   +   +    DAR+ ++ ++ 
Sbjct: 790  YGFCRAHALAFAVPALQSAWLKAHHPAALYAGLLEHDP-GMWPPRVIVSDARRHDVPVLN 848

Query: 819  PSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
              +N    D+++     G   +  S++++KG+       I   ++ +P++SL+DF  R  
Sbjct: 849  VDINRSAADYRIEQTEGGVWGVRLSMSSVKGISEDQVARI---TSGQPYNSLQDFWQRAR 905

Query: 874  SKKLNRRVLESLVFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
                   + E L+  GALD      +R  LL     +  +         +    +     
Sbjct: 906  PA---LPIAERLIQIGALDPLRGPLTRRDLLLQAAELHAH---TRARPADGQLPLGGELV 959

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                            S      E  VL    S H +  +  +LR++G        A   
Sbjct: 960  TAEP-----SGLPEMTSREALSAEIDVLKIDVSRHLMTHHHRLLREIGATDAAHLKAMYP 1014

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            G  + +A +  S Q      G R+ +VT  + +   +  FF
Sbjct: 1015 GQRVLVAGVRASTQTPPIPSGKRVIFVTLEDGSGLVDIAFF 1055


>gi|253751378|ref|YP_003024519.1| DNA polymerase III alpha subunit [Streptococcus suis SC84]
 gi|253753279|ref|YP_003026419.1| DNA polymerase III alpha subunit [Streptococcus suis P1/7]
 gi|253755890|ref|YP_003029030.1| DNA polymerase III alpha subunit [Streptococcus suis BM407]
 gi|251815667|emb|CAZ51255.1| DNA polymerase III alpha subunit [Streptococcus suis SC84]
 gi|251818354|emb|CAZ56178.1| DNA polymerase III alpha subunit [Streptococcus suis BM407]
 gi|251819524|emb|CAR45104.1| DNA polymerase III alpha subunit [Streptococcus suis P1/7]
 gi|292557997|gb|ADE30998.1| DNA polymerase III alpha subunit [Streptococcus suis GZ1]
 gi|319757664|gb|ADV69606.1| DNA polymerase III alpha subunit [Streptococcus suis JS14]
          Length = 1036

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/1025 (28%), Positives = 500/1025 (48%), Gaps = 102/1025 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + Y+ ++  +++ + + +       A+ I D N+L++A  F +     G+QPII
Sbjct: 3    AQLDTKTVYTFMDSMVTIESYVGRAKELGYHALGIMDKNSLYAAYSFMESCNKMGLQPII 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC         L    QG+    T     L+  T  GY+ L+++ +        K + + 
Sbjct: 63   GC--------ELDWKLQGEEQDITT---QLIALTTRGYRNLLKISTA-------KMTGQD 104

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                +++   +  I +       I+                      G   Y+ +     
Sbjct: 105  DFETIRQYLVD--IAVVVPYFSGIEHLEL------------------GVNYYIGVTVDTP 144

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
               ++++ +              +   F  EE  E+  VL A+  +  ++Q     V   
Sbjct: 145  VQDFKQAPL------------PIHTVRFFEEEQLESLQVLHAIRDNIPLNQV--SDVDSR 190

Query: 252  HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              L +   + ++FS   P+A++N  ++    S+ L      LPRF      +  +    E
Sbjct: 191  QKLLSADSLTNLFSNRFPQAVDNLRDLVAGISYQLNTDL-KLPRF------NRDRPAVEE 243

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L  ++  GLE         KG     Y++RL+ EL++I +M+F  YFLIV D +++ +  
Sbjct: 244  LYERSYQGLEE--------KGLTNSLYKERLEKELSIIHQMEFDDYFLIVWDLLRFGRSQ 295

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R SMPD DID     R + 
Sbjct: 296  GYYMGMGRGSAVGSLVAYALNITGIDPVKHNLLFERFLNAERYSMPDIDIDIPDIHRADF 355

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV+++YG    AQI+T+ +  AK A+RDV +    P  ++  + K I    +      
Sbjct: 356  IRYVRDRYGSTHAAQIVTYSTFGAKQAIRDVFKRFGTPEYELSNITKKISFRDSLT---S 412

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   ++ FR+   +     +   I+Q++EG  R  S HAAGIV+ D  L+  +P+   + 
Sbjct: 413  AYQRNAAFRQIINSKIEYQKAFAIAQQIEGQPRQTSIHAAGIVMSDEELTDTIPL--KIG 470

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETY 609
             D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + + +R  + +D++ I  +D +T 
Sbjct: 471  DDMLVTQYDAHAVEANGLLKMDFLGLRNLTFVQKMAEGVRERYQQEIDIAKIDLEDKKTL 530

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E  G    L  ++P   EDI+A  SL RPG  D    +  RK+G+E
Sbjct: 531  ELFAAGRTKGIFQFEQPGAISLLRRVKPGRFEDIVATTSLNRPGASDYSDNFVKRKHGQE 590

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +  + P I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM   +
Sbjct: 591  TVDLLDPTIAPILQPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNAQEMQAME 650

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F+ GA KNG ++  A  IF ++AKFA YGFN+SHA AY+ +++Q A+ K+HY   F  
Sbjct: 651  AEFLQGALKNGHAEENAREIFGMMAKFAGYGFNRSHAYAYSALAFQMAYFKSHYTDVFFD 710

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            + +DA QF+ ++   ++N      K   +++Y  L  +KG+    
Sbjct: 711  VMLNHSS------SAYIEDAMQFDFEVARLTINNIPYHDKFDKSKVYLGLKTLKGLPKDL 764

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I++     P+ S+EDF  R+      + +L  L+  G  D F  +R +++++LDN+ 
Sbjct: 765  ALWILDHR---PYKSVEDFILRLPDNFKKKDLLIPLIQIGLFDDFDANRKKIIENLDNLF 821

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +A+ +           FA E  +++D          + S +F  EQ +LG   S HPL 
Sbjct: 822  VFAEAI--------GTFFAEESYSWTD------VEDYSDSEKFMLEQELLGVGISPHPL- 866

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYE 1028
                 + +   + + +      GN   +   + + +  +T+K G ++ ++  ++  +  +
Sbjct: 867  ---VNICRESKRSFTDLADLAVGNRATVLVQIQAIRLIRTKKTGEQMAFLRVTDTKRTLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|172040092|ref|YP_001799806.1| error-prone DNA polymerase [Corynebacterium urealyticum DSM 7109]
 gi|171851396|emb|CAQ04372.1| DNA polymerase III, alpha subunit [Corynebacterium urealyticum DSM
            7109]
          Length = 1157

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/1086 (24%), Positives = 443/1086 (40%), Gaps = 140/1086 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L+  SSY  L GA     ++++  A    A+A  D + ++                 
Sbjct: 88   FAELRAASSYHFLHGASEPEELVEQAIALGITALACLDRDGMYG------------AARF 135

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
                 + + +       +     P  P + +L    EGY+RL   ++   +  + K +V 
Sbjct: 136  ATAAAEAEGELKTVFGAELSIDGPQAPGLAVLCRGQEGYRRLSRSITAARMAHRDKDAVE 195

Query: 131  IC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
                  L E      ++L       ID A      + AE       +    +L +++   
Sbjct: 196  YPSFGELAEAAGGHWLVL-------IDAAQLSIPGRAAELLEAFGTQHCLVQLQLSM--- 245

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
               D      +   A TH L  + ++     +           A+     V++ +     
Sbjct: 246  DPADVDHNEALHAFATTHGLREILSSQPTCATPSQARLAGAKAALRRRWDVARAEPVTHP 305

Query: 249  TPDHYLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                +L++ +E+  +  D   L EA   +V++A  C+F L + AP LP F   E      
Sbjct: 306  MGGSWLRSGAELRQLAGDCAWLAEATATSVDVAEECAFTLNLVAPELPHFPVPEG----H 361

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E + LR         R   G       AQ   + +D EL VI ++ F GYFLIV D + 
Sbjct: 362  SEMSWLRELVERNGTHRY--GWRGSTAAAQKAWEVIDRELGVIEKLGFPGYFLIVHDIVD 419

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
                NNI +  GRGS A S   +AL IT +D +   LLFERFL+P+R   PD D+D    
Sbjct: 420  HCHSNNI-LCQGRGSAANSAVCFALGITSVDAVAAGLLFERFLSPEREGPPDIDLDIESG 478

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV  +YG +  AQ+    + + K ALRD  RAL  P  QVD            
Sbjct: 479  RREEVIQYVYRRYGRDNAAQVANVITYRRKGALRDAARALGYPAGQVDAWT--------- 529

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                            R A  + +R+ +++++L G  RH   H+ G+VI DRP++ +VP 
Sbjct: 530  ----------------RGAAEAPERVRQLAEQLIGQARHLGIHSGGMVICDRPIADVVPT 573

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604
                  +  V Q++       GL+KFD LGL  L  L  ++D +A  RG +++L  +   
Sbjct: 574  EWARMENRSVVQWDKDDCAAVGLVKFDLLGLGMLEALHHAIDQVATHRGRRIELWRLAPT 633

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYN 662
            +   Y +L+    +G+FQ+ES      L  ++P    D++  V+L RPGPI       + 
Sbjct: 634  EEAVYEMLSRADAVGVFQVESRAQMNTLPRLRPRRFYDLVVQVALIRPGPIQGGSVHPFI 693

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKI 721
             R+NG E +   HP ++P L +T G+ ++QEQ+MQ+    +G++ +EAD LRRAM  K+ 
Sbjct: 694  RRRNGLEPVTFDHPCLEPALSKTLGIPLFQEQLMQVVVDAAGFTAAEADTLRRAMGSKRS 753

Query: 722  KEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             E M + KERF  G  + NGI+  +A  ++E +  FA YGF +SH+ ++A + Y +AW K
Sbjct: 754  PERMARLKERFYEGLERTNGITGEVADRLWEKITAFAAYGFPESHSQSFAALVYYSAWFK 813

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--------- 831
             HYP EF  A +  +       +    DAR+  ++I+P  VN                  
Sbjct: 814  YHYPAEFCVALLRAQPMGFYSPQSLIADARRHGVRILPVCVNASGAQADTDLSAGSAASP 873

Query: 832  ---------------------------DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFD 863
                                          I   LA+I G+    A  I+    +   + 
Sbjct: 874  SVSSSSSFKDVNRARGVHGLGRGTAEPIGAIRLGLASIAGISEEAAERIVATREEQGEYR 933

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
             + D         L+   + +L  AGAL+  G  R Q           A W       + 
Sbjct: 934  QVSDLSR---EAGLSVAQVAALARAGALESLGLDRRQ-----------AVWAAGLAATER 979

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK------ 977
            E +            ++      ++      +         GHP+++ +  L +      
Sbjct: 980  EGMLPGTSA-----PSVPALPGMSAFELAAADLAATSVTPDGHPVELLRGQLSQWHDLPV 1034

Query: 978  ------------MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
                          +    + +    G+ IR+A ++  +Q+  T  G  + ++   +   
Sbjct: 1035 RAGVRRGQRRGGAAVVPAVDLLHVPDGSRIRVAGVITHRQRPATAGG--VVFLGVEDETG 1092

Query: 1026 EYEANF 1031
                  
Sbjct: 1093 IANVML 1098


>gi|239978670|ref|ZP_04701194.1| DNA polymerase III alpha subunit [Streptomyces albus J1074]
          Length = 1499

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/1028 (26%), Positives = 456/1028 (44%), Gaps = 67/1028 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL   S YSL  GA     + ++ A     A+A+TD + L  A+ F++ A  AG++P
Sbjct: 12   GFTHLHTVSGYSLRYGASHPGLLAERAAERGMDAVALTDRDTLAGAVRFAKAAATAGVRP 71

Query: 70   IIGCQLDIDMQDNLK---MTNQGKTPFPTVPSIVLLVST-AEGYQRLIELVSRMYLLDQG 125
            + G +L +  +   +       G     +   +  L    A G+  L  LV+  +     
Sbjct: 72   LFGVELAVGERPRPQGRVPVRGGAFIDESAARVTYLARDGATGWATLCRLVTAAHAAG-- 129

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
              + +  L W +E   EG+ +L G  +  + RA        A + L  +++++GD L + 
Sbjct: 130  --TDQPLLPW-RENHGEGVTVLLGP-ASDVGRALAAGRPDRAARLLAPWREVYGDALRLE 185

Query: 186  LQRHR----GYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
               H     G    R + + V  A    +P V TN   +       A DVL A     V 
Sbjct: 186  AVHHGLSGTGPGSLRLAARTVGFAADQGVPAVLTNAVRYADPGSGPAADVLDAAR-RLVP 244

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARRCSFILQVHA 289
                R   + + +LK+ + M      + EA           L  T   A  C    +   
Sbjct: 245  VDPRRGLDSGERWLKDAAAMARTAERIAEAAGLGPEGAARLLAETRRTADACLVDPEDDL 304

Query: 290  PIL-PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNV 347
             I   RF E              R  A   L  R A G +  G+  +  Y  RL  EL++
Sbjct: 305  GIGAVRFPEAALVGAG-------RRTAQRVLASRAAAGMVRLGHDRKAAYWDRLHHELDI 357

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I    F+ YFL VA  +   +   + V   RGSGAGS+  + L I   DP+   LL ERF
Sbjct: 358  IGHHGFATYFLTVAQVVDDVRDLGVRVA-ARGSGAGSLVNHLLGIAHADPVEHGLLMERF 416

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            L+  R  +PD DID    RR EV R +  ++G ERVA +    + + + A+RDVG AL M
Sbjct: 417  LSKRRAVLPDIDIDVESARRLEVYRAILGRFGAERVATVAMPETYRVRHAVRDVGAALSM 476

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
              + +DR+ K  P+  A      A+A+    ++        DRL ++ ++L+ L R  + 
Sbjct: 477  DPADIDRIAKAFPHIRARDARA-ALAELPELKQINEEFGGRDRLWQLVEELDALPRGVAM 535

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            H  G+++ D  L+   P+       LP++QF+ + +E  GL+K D LG++  + +  +  
Sbjct: 536  HPCGVLLSDASLTARTPVVPTSGEQLPMSQFDKEDVEDLGLLKLDVLGVRMQSAMAHATA 595

Query: 588  FLAQ-RGVKVDLS---LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
             + +  G  +DL         D  TY L+ +  TLG FQ+ES G R  +  +QPD   D+
Sbjct: 596  EVERATGEPLDLDRQADPALADPATYALVRSAETLGCFQIESPGQRDLVGRLQPDSFHDL 655

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +  +SL+RPGP+  D +  +   ++G+  +   HP ++  L++T GV+++ EQ+++I  +
Sbjct: 656  VVDISLFRPGPVAADMVRPFIEARHGRAPVRYPHPDLEDALRDTYGVVVFHEQIIEIVSV 715

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            L+G     AD +RRA+     +   + +  F   A+  G +  +    +E++  F  YGF
Sbjct: 716  LTGCGRDRADQVRRALS--DPDAQGRLRVWFAQHAAARGYTAEVIARTWEIVEAFGSYGF 773

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+  + ++P  V
Sbjct: 774  CKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRGVPVLPLDV 832

Query: 822  NTPCVDFKV----------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            N      ++          G   +  +L+ + G+    A  I E     P+ SL DF  R
Sbjct: 833  NRSGTTHRIELVSGDGERPGRWGVRLALSDVHGISEAEAARIEE---HAPYTSLLDFWQR 889

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
                +  R V E L   GALD FG +R  LL  L  + +               +   + 
Sbjct: 890  A---RPGRPVAERLAQVGALDAFGANRRDLLLHLTELHRG----RPRGAAAQPTLLGADS 942

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
               + ++        + + R   E  VLG   S + +D ++  L ++ +           
Sbjct: 943  APGARRVPSAGLPDLDETERLSAELGVLGMDASRNLMDDHRDFLEELRVTSARSLRGASH 1002

Query: 992  GNNIRLAA 999
            G+ + +A 
Sbjct: 1003 GSTVLVAG 1010


>gi|291450565|ref|ZP_06589955.1| DNA polymerase III [Streptomyces albus J1074]
 gi|291353514|gb|EFE80416.1| DNA polymerase III [Streptomyces albus J1074]
          Length = 1489

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/1028 (26%), Positives = 456/1028 (44%), Gaps = 67/1028 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL   S YSL  GA     + ++ A     A+A+TD + L  A+ F++ A  AG++P
Sbjct: 2    GFTHLHTVSGYSLRYGASHPGLLAERAAERGMDAVALTDRDTLAGAVRFAKAAATAGVRP 61

Query: 70   IIGCQLDIDMQDNLK---MTNQGKTPFPTVPSIVLLVST-AEGYQRLIELVSRMYLLDQG 125
            + G +L +  +   +       G     +   +  L    A G+  L  LV+  +     
Sbjct: 62   LFGVELAVGERPRPQGRVPVRGGAFIDESAARVTYLARDGATGWATLCRLVTAAHAAG-- 119

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
              + +  L W +E   EG+ +L G  +  + RA        A + L  +++++GD L + 
Sbjct: 120  --TDQPLLPW-RENHGEGVTVLLGP-ASDVGRALAAGRPDRAARLLAPWREVYGDALRLE 175

Query: 186  LQRHR----GYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
               H     G    R + + V  A    +P V TN   +       A DVL A     V 
Sbjct: 176  AVHHGLSGTGPGSLRLAARTVGFAADQGVPAVLTNAVRYADPGSGPAADVLDAAR-RLVP 234

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARRCSFILQVHA 289
                R   + + +LK+ + M      + EA           L  T   A  C    +   
Sbjct: 235  VDPRRGLDSGERWLKDAAAMARTAERIAEAAGLGPEGAARLLAETRRTADACLVDPEDDL 294

Query: 290  PIL-PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNV 347
             I   RF E              R  A   L  R A G +  G+  +  Y  RL  EL++
Sbjct: 295  GIGAVRFPEAALVGAG-------RRTAQRVLASRAAAGMVRLGHDRKAAYWDRLHHELDI 347

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I    F+ YFL VA  +   +   + V   RGSGAGS+  + L I   DP+   LL ERF
Sbjct: 348  IGHHGFATYFLTVAQVVDDVRDLGVRVA-ARGSGAGSLVNHLLGIAHADPVEHGLLMERF 406

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            L+  R  +PD DID    RR EV R +  ++G ERVA +    + + + A+RDVG AL M
Sbjct: 407  LSKRRAVLPDIDIDVESARRLEVYRAILGRFGAERVATVAMPETYRVRHAVRDVGAALSM 466

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
              + +DR+ K  P+  A      A+A+    ++        DRL ++ ++L+ L R  + 
Sbjct: 467  DPADIDRIAKAFPHIRARDARA-ALAELPELKQINEEFGGRDRLWQLVEELDALPRGVAM 525

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            H  G+++ D  L+   P+       LP++QF+ + +E  GL+K D LG++  + +  +  
Sbjct: 526  HPCGVLLSDASLTARTPVVPTSGEQLPMSQFDKEDVEDLGLLKLDVLGVRMQSAMAHATA 585

Query: 588  FLAQ-RGVKVDLS---LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
             + +  G  +DL         D  TY L+ +  TLG FQ+ES G R  +  +QPD   D+
Sbjct: 586  EVERATGEPLDLDRQADPALADPATYALVRSAETLGCFQIESPGQRDLVGRLQPDSFHDL 645

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +  +SL+RPGP+  D +  +   ++G+  +   HP ++  L++T GV+++ EQ+++I  +
Sbjct: 646  VVDISLFRPGPVAADMVRPFIEARHGRAPVRYPHPDLEDALRDTYGVVVFHEQIIEIVSV 705

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            L+G     AD +RRA+     +   + +  F   A+  G +  +    +E++  F  YGF
Sbjct: 706  LTGCGRDRADQVRRALS--DPDAQGRLRVWFAQHAAARGYTAEVIARTWEIVEAFGSYGF 763

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+  + ++P  V
Sbjct: 764  CKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRGVPVLPLDV 822

Query: 822  NTPCVDFKV----------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            N      ++          G   +  +L+ + G+    A  I E     P+ SL DF  R
Sbjct: 823  NRSGTTHRIELVSGDGERPGRWGVRLALSDVHGISEAEAARIEE---HAPYTSLLDFWQR 879

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
                +  R V E L   GALD FG +R  LL  L  + +               +   + 
Sbjct: 880  A---RPGRPVAERLAQVGALDAFGANRRDLLLHLTELHRG----RPRGAAAQPTLLGADS 932

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
               + ++        + + R   E  VLG   S + +D ++  L ++ +           
Sbjct: 933  APGARRVPSAGLPDLDETERLSAELGVLGMDASRNLMDDHRDFLEELRVTSARSLRGASH 992

Query: 992  GNNIRLAA 999
            G+ + +A 
Sbjct: 993  GSTVLVAG 1000


>gi|306835337|ref|ZP_07468361.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49726]
 gi|304568783|gb|EFM44324.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49726]
          Length = 973

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/1018 (26%), Positives = 433/1018 (42%), Gaps = 96/1018 (9%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             Q    +  F  L   SSYS L+GA     ++ +        +A+ D +  +  ++F++ 
Sbjct: 39   VQRWHSAVPFAELHAVSSYSFLDGAAEPEELVARALELGLEGLAVVDRDGFYGLMKFAEA 98

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A  AG+  +                  G         + +L  T EGY+RL  L++R  +
Sbjct: 99   AAKAGLPAMY-----------------GAELSLAEAPVTVLARTPEGYRRLSRLIARARM 141

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-FKKLFGD 180
                K SV      L  +               +++  FF     A +++    +++  D
Sbjct: 142  DAGEKGSVAYPP--LDAVAR------------ELEKECFFLLGWEAIQKIDHVLERIKID 187

Query: 181  RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             + +        +       +           A   +    +    A    +A   S   
Sbjct: 188  SIVLEYACTMSPEDADHHGFLDKYNNLRAIATARPAAATRDQVRLAAAKRALAHRQSLEE 247

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            +  D   +    ++++  +M  +    PE +  TV +AR CSF     AP LP F+  E 
Sbjct: 248  AAPDAHPMGAG-WMRSGEQMAQLLPGRPELIAETVHLARECSFTWGALAPNLPDFVVPEG 306

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                  E + L ++     + R A         A   ++++  EL +I ++ F GYFLIV
Sbjct: 307  ----HTEMSWLEHEVWRRGKKRYASRPPEIQARA---KKQMRHELGIIKQLGFPGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + + ++ NI +  GRGS A S   +AL IT+ +P+   LLFERFL+PDR   PD DI
Sbjct: 360  CDLVDFCRQENI-LCQGRGSAANSAVCFALGITNAEPISAQLLFERFLSPDRDGPPDIDI 418

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D    RR+EVI+YV   +G +R AQ+    + + K A RD  RAL  P    D   K I 
Sbjct: 419  DIESGRREEVIQYVYRTHGRDRAAQVANVITYRRKGATRDAARALGYPQGSADAWSKGIA 478

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              PA  VSL                        ++++     RH   H+ G+V+ DRP++
Sbjct: 479  ELPA-DVSL------------------------LAEQFLDQPRHLGIHSGGMVLCDRPIA 513

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
             +VPM         V Q++      AGL+KFD LGL  L  L   +D +      +V L 
Sbjct: 514  DVVPMEWARMEGRSVLQWDKDDCAAAGLVKFDLLGLGMLEALHHMIDAVRATTGREVRLW 573

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
             +   +   Y +L     +G+FQ+ES      L  ++P C  D++  V+L RPGPI    
Sbjct: 574  ELDLAEPAVYDMLCRADAVGVFQVESRAQLATLPRLKPRCFFDLVVEVALIRPGPIQGGS 633

Query: 659  -VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
               Y  R++G E +   HP+++  L +T G+ ++QEQ+MQIA   +G++ +EAD LRRAM
Sbjct: 634  VHPYLRRRDGLEPVTYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFTGAEADDLRRAM 693

Query: 718  -GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
              K+   +M   + RF  G    NGI   +A  ++  +  FA YGF +SH+ ++A + Y 
Sbjct: 694  GSKRSPAKMAALRSRFFEGLRATNGIDGEVAEKLWAKITAFAAYGFPESHSQSFASLVYF 753

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNR 834
            +AW K HYP EF    +  +       +   QDAR+  ++++P S+N      + +    
Sbjct: 754  SAWFKHHYPAEFCVGLLRAQPMGFYSPQSLIQDARRHGVRVLPLSINDSGAQARALPTGE 813

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I   L  IKG+G   A  +  A+   PF S+ D   R D    +   +E+L  AGAL+C 
Sbjct: 814  IRLGLNLIKGLGDKAAERVEAAA---PFSSVSDLSRRADL---SVEQVEALATAGALECL 867

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            G  R Q L                   + E +        S           ++      
Sbjct: 868  GLERRQALWQAGVA-----------ATEREGMLPGTSALAS-----PHLPGMSAFELMAT 911

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            +    G      P+++ +  L    +           G  +R+A ++  +Q+ +T  G
Sbjct: 912  DVAATGVTHDKQPMELVRAALG--DVLPSSHLPHVPDGTRVRIAGIITHRQRPRTASG 967


>gi|163733046|ref|ZP_02140490.1| DNA polymerase III, alpha subunit [Roseobacter litoralis Och 149]
 gi|161393581|gb|EDQ17906.1| DNA polymerase III, alpha subunit [Roseobacter litoralis Och 149]
          Length = 991

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/995 (23%), Positives = 413/995 (41%), Gaps = 67/995 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F  L + S++S L+GA      + + AA    AIAI D N +   +    +A     Q  
Sbjct: 2   FAELNITSNFSFLKGASHPEEYMSRAAALGIGAIAIADENTVAGIVRAHAQARDIARQVR 61

Query: 71  IGCQLDIDMQD------------------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
                +                         ++    +  F     I  L     G+  L
Sbjct: 62  ERQTWEAANGQIGPALPAGLRVTPTFLYAMPRLIPAARLVFSDACEITALPENRVGWGTL 121

Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             L+S      + K S  + L  L E G+ GL ++    +  +             ++L 
Sbjct: 122 CRLLSMGRQRAE-KGSCELRLQDLLEGGS-GLQLILWPQAQEVP--CGAGGWAQTARQLT 177

Query: 173 TFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
                F  ++++ L  ++ G D  R + + + A    LP VA+   +       +  DV+
Sbjct: 178 R---RFTGKIHIGLFPQYDGRDPQRFADLTEQARRLGLPTVASAAPVMHHGARRKLADVV 234

Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            A+     V    R  +   +  L++ +EM  +F     A++    +A+   F L     
Sbjct: 235 TAIRTGCRVDDLGRDALPNSEARLRSEAEMRRLFKGFEAAVDRAHTLAQSLKFSLDELRY 294

Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             P  I +      +   + LR  A  GL  R   GA  K        + L+ EL +I +
Sbjct: 295 EYPSEIAE-----NETPSDRLRRLAYEGLAWRYPAGASDK------VHRLLEHELTLIGK 343

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           +K+  YFL V D + +A+  +I +  GRGS A SV  Y L +T + P   +++FERF++ 
Sbjct: 344 LKYEPYFLTVRDIVAFARSRDI-LCQGRGSAANSVVCYCLGVTSVSPEIGTMVFERFVSE 402

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            R   PD D+DF  +RR+EVI+++  +YG  R     T    + K A+R+VGRA+ +   
Sbjct: 403 ARNEPPDIDVDFEHERREEVIQHIYERYGRHRAGLCATVVHYRGKRAIREVGRAMGLSED 462

Query: 471 QVDRLCKLIPN-DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            +  L   +        +  + +A+          D  + + L +  ++ G  RH S H 
Sbjct: 463 TISALSSQLWGFFSTKGIEAERMAEIG----LDANDRRLQQTLALVYEINGFPRHLSQHV 518

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G VI +  L +LVP+         V  ++   IE  G++K D L L  LT ++K+ D +
Sbjct: 519 GGFVITEGRLDELVPIENATMEGRTVICWDKDDIETLGILKVDVLSLGMLTCIRKAFDLM 578

Query: 590 A-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
                V   L+ +P +D   Y +L    ++G+FQ+ES      L  M+P C  D++  V+
Sbjct: 579 QMHHNVSHTLASLPPEDPVVYDMLCRADSIGVFQVESRAQMNFLPRMRPRCFYDLVIEVA 638

Query: 649 LYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
           + RPGPI  D +  Y  R+NG+E++      +  +L +T GV ++QEQ MQIA + +G++
Sbjct: 639 IIRPGPIQGDMVHPYIRRRNGEEEVSFPSDELGEVLGKTLGVPLFQEQAMQIAIVGAGFT 698

Query: 707 LSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
             +AD LRR++   K    + + +  F+ G    G  +  A   F  +  F  YGF +SH
Sbjct: 699 PDQADRLRRSLATFKKHGNVSEFRNLFLRGMKNKGYDEDFAERCFSQIEGFGSYGFPESH 758

Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
           AA++A++ Y ++W+K H+P  F  A +  +        +  +DAR+  + + P  +N   
Sbjct: 759 AASFALLVYASSWIKCHHPGIFACALLNSQPMGFYAPAQIVRDAREHGVDVRPICINASF 818

Query: 826 VDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
            +  +  +      +      IKGV    A  +  A  +  + S+ D   R     L   
Sbjct: 819 WENVMEPDGQGGLALRLGFRQIKGVSEEDATWLTAARGNG-YRSVRDVWRRA---GLQPM 874

Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
           ++E L  A        +R   L     +   A             +FA +    +     
Sbjct: 875 MIERLAEADVFAALDLNRRAALWEAKALVPGA----------PLPLFAGDIDGEAIDEPA 924

Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
                         +   +      HP+ + +  L
Sbjct: 925 ALLPEMTLGEEVVEDYVAMRLTLRAHPMALLRHRL 959


>gi|298500380|ref|ZP_07010185.1| DNA polymerase III subunit alpha [Vibrio cholerae MAK 757]
 gi|297541073|gb|EFH77127.1| DNA polymerase III subunit alpha [Vibrio cholerae MAK 757]
          Length = 637

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/653 (40%), Positives = 385/653 (58%), Gaps = 27/653 (4%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G
Sbjct: 2   SDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG 61

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++PIIG             T Q +     +  + LL     GY+ L  L+S+ YL    +
Sbjct: 62  VKPIIGA----------DFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQ 111

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L
Sbjct: 112 HQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLEL 170

Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    R
Sbjct: 171 IRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230

Query: 246 P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
           P   +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F         
Sbjct: 231 PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----G 285

Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 286 MAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 345

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 346 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P 
Sbjct: 406 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
           DP   +  +A   +   +E   AD  V  L++  + LEG  R+A  HA G+VI    ++ 
Sbjct: 466 DPGMTLE-KAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
             P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525 FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584

Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L
Sbjct: 585 RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVAL 637


>gi|146339654|ref|YP_001204702.1| error-prone DNA polymerase [Bradyrhizobium sp. ORS278]
 gi|167016909|sp|A4YRD9|DNAE2_BRASO RecName: Full=Error-prone DNA polymerase
 gi|146192460|emb|CAL76465.1| Error-prone DNA polymerase [Bradyrhizobium sp. ORS278]
          Length = 1170

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/1112 (22%), Positives = 435/1112 (39%), Gaps = 130/1112 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  + V +++S L G       + + A     AI I D N L   +    +        
Sbjct: 5    PYAEIGVTTNFSFLHGGSHPQAYVHQAAEYGLTAIGIADHNTLAGIVRAYSE-------- 56

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFP-TVPSIVLLVSTAEGYQRLIELVSR----MYLLDQ 124
                  +  +    K+    +  F    P I++       Y RL +L++R      L   
Sbjct: 57   ----LSNDQLGYRPKLLYGARLVFTCGTPDILVYPRDRAAYGRLCQLLTRGKRGSDLDKV 112

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K   R+    L +     L++L                       L   K    + +++
Sbjct: 113  AKGDCRLAFEDLFDFIAGQLLVLMPPHRF---------DEDALGAILARLKDSPAEGVWL 163

Query: 185  -NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQ 242
                 +RG DR R +++ +LA + ++PL+ATN+ L+   +     DVL  +    ++ S 
Sbjct: 164  AGSLLYRGDDRRRLARLARLAASAKVPLIATNDVLYHHPQQRMLQDVLTCIREKASIESI 223

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              R +   + +LK   EM  +F D PEA+  T+    R  F L       P         
Sbjct: 224  GRRLQANAERHLKPGHEMARLFRDHPEAIAETLRFTDRIVFSLDQLKYQYPDEPVPPG-- 281

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              K  +  L +   AG +         +       R  L+ EL +IA + ++ YFL V D
Sbjct: 282  --KTAQGHLEDLTWAGAKTYFGDKLDDR------LRAVLNKELALIAELNYAHYFLTVHD 333

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+   I +  GRGS A S   Y L IT +DP +  LLFERF++ +R+  PD D+DF
Sbjct: 334  IVRYARSEGI-LCQGRGSAANSAVCYVLGITSVDPTKIDLLFERFISKERLEPPDIDVDF 392

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EV++YV ++YG  R A I T    + ++A+RDVG+AL +       L   +   
Sbjct: 393  EHSRREEVMQYVYHRYGRHRAAIIATVIHYRPRSAIRDVGKALGLTEDVTSVLADTVWGS 452

Query: 483  PAHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                +S      D + R+A L   +P + R +E++ +L    RH S H  G V+    L 
Sbjct: 453  WGDGLS------DMQVRQAGLDPHNPMIRRAVELASELITFPRHLSQHVGGYVLTQDRLD 506

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA----QRGVKV 596
              VP+      D    +++   ++   ++K D L L  LT ++KS D +A    +R V  
Sbjct: 507  SYVPIGNAAMDDRTFIEWDKDDVDALSMMKVDVLALGMLTCIRKSFDLIADHKGRRYVLS 566

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI- 655
            D+     DD+E Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI 
Sbjct: 567  DIKSE--DDNEVYQMLQRGESLGVFQVESRAQMNMLPRLKPRTFYDLVIEVAIVRPGPIQ 624

Query: 656  -DNIVVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
             D +  Y  R+N  EK+    P         +  +L +T GV ++QEQ M+IA   + +S
Sbjct: 625  GDMVHPYLRRRNKLEKVTYPSPSPDHGPSDELYKVLHKTLGVPLFQEQAMRIAIEAAKFS 684

Query: 707  LSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
              EA+ LRRAM   +    +   +E+ +S     G     A + F+ +  F  YGF +SH
Sbjct: 685  PEEANGLRRAMATFRNVGTIGSYEEKMVSNMIARGYDPAFAKSCFDQIKGFGSYGFPESH 744

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AA++A + Y ++W+K  +P  F  A +  +        +   DAR+  ++I    V+   
Sbjct: 745  AASFAQLVYVSSWLKYFHPDAFCCALLNSQPMGFYAPAQIVGDARKNGVEIRDIDVSHSF 804

Query: 826  VDFKV-----GDNRIYYSLAAIKGVG-----TTTARHIMEA-SADKPFDSLEDFCSRVDS 874
             D  +         +      I G           R + EA   +    S     +    
Sbjct: 805  ADNTLEKTDGEYCAVRLGFRQIDGFRWIDRDEERIRKLSEAVRKEALSVSTRSLPAISPV 864

Query: 875  KKLNRRVLESLVFAGALDCFGY----SRMQLLQSLDNIQKYAQWVEKNRTNKHE-NI--F 927
                 R                     R   L + D    +A  + + R  +   ++  F
Sbjct: 865  SFRGARSANPESRDSGFALRAPRNDNDRQIPLHNDDREDDWADRIIRARQRRPFTSLEDF 924

Query: 928  AHEKGT------------------------------FSDKITLE---------------- 941
            A +                                   D + L                 
Sbjct: 925  ARDTALPKRALLLLADADAFRSLGLDRRAALWAVRRLPDDVPLPLFEAAIAREQPDEGAQ 984

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                         + + +     GHP++  +      G+    +   T     IR A +V
Sbjct: 985  PLPEMPLPEHVVADYQTIRLSLKGHPMEFLRRRFAAEGVLACRDVNDTNDRRRIRCAGVV 1044

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +Q+  + KG  + ++T  +         +P
Sbjct: 1045 LVRQRPGSAKG--VVFMTLEDETGIANIVVWP 1074


>gi|253795644|ref|YP_003038740.1| DNA polymerase III, alpha subunit [Candidatus Hodgkinia cicadicola
           Dsem]
 gi|253739952|gb|ACT34287.1| DNA polymerase III, alpha subunit [Candidatus Hodgkinia cicadicola
           Dsem]
          Length = 995

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/974 (38%), Positives = 546/974 (56%), Gaps = 47/974 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           ++    FV+L+V S+YS+L+  LS++ I    A   QPA+A+TDT +L  ALEF  K  A
Sbjct: 1   MQARREFVNLKVRSTYSVLDSTLSVDRIAQLAAERGQPAVALTDT-SLHGALEFCVKCDA 59

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AG++PI+GC         L +  Q          + L V + +GY  L++LV+     + 
Sbjct: 60  AGVKPIVGC--------KLLVDCQHAVASAPPLLVTLAVKSEKGYANLLKLVNNS---EV 108

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
           G +  +I L+ L     +GL+ + G + G + + +     + A       +      +  
Sbjct: 109 GARHHKITLAALA-ASAQGLLAIAGEAGGMVWQLYKKLGFEGASTAFALLQDSMEGSVCA 167

Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +QR        E  VV+ A    L LVATN +LF +  D+E + VL A+      S +D
Sbjct: 168 EVQRGAVVWPEYEQAVVEAAGALSLMLVATNETLFETRADFEVYKVLRAI------SSRD 221

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               +  ++ K+ ++M+S F+D+P+AL  T +++  C F LQ  A  LP F         
Sbjct: 222 EVGASEHNFFKSYADMLSRFADMPKALAATAKVSALCEFRLQARAVTLPAF-----SGAV 276

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
           + E   L  KAV  LE +  +   A       Y +RL +EL VI R  +SGYFLIV+DF 
Sbjct: 277 RREARALYTKAVRALEHQFYKVGKANKPW---YHRRLLWELGVITRASYSGYFLIVSDFT 333

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            WAK +N+ VGPGRGS AGS+ AY+L +T++DP+   LLFERFLN DR  +PD D+DFC 
Sbjct: 334 LWAKAHNVYVGPGRGSAAGSLVAYSLGVTNVDPIAHGLLFERFLNADRAGLPDIDVDFCH 393

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             R++V+RY Q KYG   V QI TFG+LQ +AA++DV R L++P+   + LCK +P    
Sbjct: 394 QGREQVVRYAQFKYGELCVGQISTFGTLQVRAAIKDVSRCLEVPFETANALCKAVPTYGR 453

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              S+ A       R A +    + +L+ +++KL G+YR  STHAAG+VI +  L   VP
Sbjct: 454 GLESVYAALA----RTALVPAELLAKLMAVTEKLIGVYRLVSTHAAGLVISNSQLRDSVP 509

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
              D  + + V +++M W+E AGL KFD LGLKTL  + + L  L    V V L    F 
Sbjct: 510 TAWDEANRVSVVRYSMNWVESAGLPKFDLLGLKTLAAVDEVLTQLMASRVNVGLE--CFG 567

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
             + + L+     LG FQLES GM++ ++ + P  + D+ AL++LYRPGP+ +I  Y++ 
Sbjct: 568 GEKAFKLICGGRVLGTFQLESRGMKKHIKHVLPSSLNDLAALIALYRPGPMKHIKQYSDT 627

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           K+G    VS+H  +D +L ET GV+IYQEQVM IAQ L+GYSLSEADVLR+AM KK   E
Sbjct: 628 KHGSAARVSLHQAVDHLLDETYGVVIYQEQVMLIAQKLAGYSLSEADVLRKAMAKKDMRE 687

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M  Q++RF+ GA  NG+ + +A ++F+ LA+FADYGFNKSHA AY+ ++Y TA +K  +P
Sbjct: 688 MLVQRQRFVGGAVANGVKRALAASLFDGLARFADYGFNKSHALAYSALAYITAHLKASFP 747

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
           +EF AA+M++E+    K+     +A    I+ + PSV  P + FK G+  I++ L+AIKG
Sbjct: 748 LEFYAANMSVEIAEQAKMSSLYYEAVSSGIKFVAPSVQAPFLKFKAGNGFIHFPLSAIKG 807

Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
           +G      I  A   +PF  L DFC RV  +   +RVL+SL+ AGA+DCFG SR  L+ S
Sbjct: 808 IGEPVVASIAAARGSQPFADLTDFCVRVSPRAATKRVLKSLIAAGAMDCFGASRRALMAS 867

Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-------------R 951
           LD + + A+  +K R +   ++    K         +  +     V              
Sbjct: 868 LDAMARCAKS-KKGRVDASSDVGTDAKPDVGTDAKPDVGTDAKPDVGTDASNKPAASDST 926

Query: 952 FENEQRVLGFYFSG 965
             +E   LG Y S 
Sbjct: 927 LYDEYLALGCYVSA 940


>gi|91782661|ref|YP_557867.1| DNA polymerase III, alpha subunit [Burkholderia xenovorans LB400]
 gi|91686615|gb|ABE29815.1| DNA polymerase III, alpha subunit [Burkholderia xenovorans LB400]
          Length = 1195

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/1128 (22%), Positives = 448/1128 (39%), Gaps = 135/1128 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK------- 61
            P++  L   +++S L GA     ++++  +    A+AITD  +L   +            
Sbjct: 19   PAYAELHCLTNFSFLRGASHPYELVEQAMSRGYSALAITDECSLAGVVRAHTALKEIREE 78

Query: 62   --------------------------ACAAG--------------IQPIIGCQLDIDMQD 81
                                      A  AG              ++P+    +      
Sbjct: 79   RERQQKEREDKAKAAKAAQAAVPLEDASKAGFIQQEAEEIEDAESLKPLPHLII----GS 134

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
               +T++   PF T   +V L +   GY  L EL++        K S R+  S   +   
Sbjct: 135  EFNLTDETGEPFCT---LVALATNRNGYGNLSELITLARSRAD-KGSYRLGPSDFTDSLP 190

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQV 200
                + T      +       +     +           R ++ L+    G D  +   +
Sbjct: 191  HLAHLQTLPDCVLMLVPQRAATLSHTLRCAHWLASFAAQRAWIALELWQTGSDDLQIDAL 250

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
              ++    LPLVA    L  +       D + A+   T +S          + +++ R  
Sbjct: 251  RMISKASGLPLVAAGGVLMHARSRKPLQDTMTAIGLVTPLSACGHALEANAERHMRTRVR 310

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            +  ++    + LE T+ IA  C F L       P  +    +       + LR   +AG 
Sbjct: 311  LGKLYPR--DTLEETLRIAALCRFSLDELKYEYPEELVPAGE----SPSSYLRKLVMAGA 364

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
              R  +G   K         +++ EL +IA +K+  YFL V D + +A+  NI +  GRG
Sbjct: 365  MERWPEGMDLKRIG------QIEKELALIADLKYEKYFLTVHDIVSFARSRNI-LCQGRG 417

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            S A S+  Y L +T+IDP++ ++L ERF++  R   PD D+DF   RR+EVI+Y+  KYG
Sbjct: 418  SAANSIVCYCLHVTEIDPVQMNMLIERFISRARNEPPDIDVDFEHQRREEVIQYIYTKYG 477

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
              R A   +  +  A++AL+DVG+AL +  S ++R+ K              +A+     
Sbjct: 478  RHRAALTASLITYHARSALKDVGKALGLEASLIERISKSQQWWDGTDAVAGYLAE----A 533

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
                       L+ ++++L    RH S H  G VI    LS+LVP+      D  V +++
Sbjct: 534  GFDANSHITQNLIRLTRELRSFPRHLSQHVGGFVIAKDKLSRLVPIENATMKDRSVIEWD 593

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--GVKVDLSLIPFDDHETYHLLTTKGT 617
               I+   L+K D L L  L+ ++++L+F+A R    +  +  IP +D   Y +     T
Sbjct: 594  KDDIDALKLLKVDVLALGMLSAIRRALEFVALRRGFPQFRVQDIPREDRAVYEMCGHADT 653

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIH 675
            +G+FQ+ES   +  L  ++P+   D++  V++ RPGPI   +   Y  RK G E +    
Sbjct: 654  IGVFQIESRAQQSMLPRLKPNKYYDLVIEVAIVRPGPIQGGMVHPYLRRKQGLEPVDYAK 713

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-EEMDKQKERFIS 734
              + P+L+ T GV I+QEQVM +A + + Y+  +AD LRRAM    +   + K ++    
Sbjct: 714  DELRPVLERTLGVPIFQEQVMHLAMVAAEYTGEQADQLRRAMAAWRRSGNLAKYQKDLNE 773

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               + G  +     I + +  F +YGF +SHAA++A++ Y +AW+K + P  FLA  +  
Sbjct: 774  RMLRRGYEQAFIDRICKQIEGFGEYGFPESHAASFALLVYLSAWLKRYEPAAFLAGLLNS 833

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----------------DNRIYY 837
            +        +  QDA++  ++I+PP V     +                       +   
Sbjct: 834  QPLGFYSPSQLVQDAKRHGVKILPPDVTLSDWESTFERRGHEGRRISSDETCLHRQQTVL 893

Query: 838  SLAAIKGVG----------TTTARHIMEA--------SADKPFDSLEDFCSRVDSKKLNR 879
            S   ++ +              A+ +            A  P   +     +  ++    
Sbjct: 894  SAQQLRDLSLRRLTVSRTVRRAAQRLTARVFQPSNTYGARGPAVRIGMHLIKGLTQGAAE 953

Query: 880  RVLESLVFAGALDCFGYSRMQLLQ--------------SLDNIQKYAQWVEKNRTNKHEN 925
            R++ +   A   D    +R   L               S+   ++ A W    +      
Sbjct: 954  RIMAARHDAQFTDVDDLARRAALTRRDLEALAAANALVSIAGHRREAWWAVTAQHAVPRL 1013

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            +   +       + L + +     V   ++   LG   + HPL + +  L +   +   E
Sbjct: 1014 L--RDAPIAEAALALPQAAESREIV---DDYASLGLTLNRHPLALLRARLARQRFRTAAE 1068

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              A   G   R   +V  +Q+  T  G+   +V+  +         +P
Sbjct: 1069 LTACQHGTLARACGIVTVRQRPGTANGT--VFVSIEDETGSINVIVWP 1114


>gi|296162446|ref|ZP_06845237.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1]
 gi|295887259|gb|EFG67086.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1]
          Length = 1195

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/1121 (22%), Positives = 443/1121 (39%), Gaps = 121/1121 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA---- 64
            P++  L   +++S L GA     ++++  +    A+AITD  +L   +            
Sbjct: 19   PAYAELHCLTNFSFLRGASHPYELVEQAMSRGYSALAITDECSLAGVVRAHTALKEMREE 78

Query: 65   ------------------AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP--------- 97
                                  P+        +Q   +     ++  P            
Sbjct: 79   RERQQKEREDKAKAAKAEQAAAPLEDASKTGAIQQEAEEIEDAESLKPLPHLIIGSELNL 138

Query: 98   ---------SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLT 148
                     ++V L +   GY  L EL++        K S R+  S   +       + T
Sbjct: 139  TDETGEPFCTLVALATNRNGYGNLSELITLARSRAD-KGSYRLGPSDFTDSLPHLAHLQT 197

Query: 149  GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTH 207
                  +       +     +           R ++ L+    G D  +   +  ++   
Sbjct: 198  LPDCVLMLVPQRAATLSHTLRCAHWLASFAAQRAWIALELWQTGSDDLQIDALRMISKAS 257

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSD 266
             LPLVA    L  +       D + A+   T +S          + +++ R  +  ++  
Sbjct: 258  GLPLVAAGGVLMHARSRKPLQDTMTAIGLVTPLSACGHALEANAERHMRTRVRLGKLYPR 317

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
              + LE T+ IA  C F L       P    +E   + +   + LR   +AG   R  +G
Sbjct: 318  --DTLEETLRIAALCRFSLDELKYEYP----EELVPVGESPSSYLRKLVMAGAMERWPEG 371

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
               K         +++ EL +IA +K+  YFL V D + +A+  NI +  GRGS A S+ 
Sbjct: 372  MDLKRIG------QIEKELALIADLKYEKYFLTVHDIVSFARSRNI-LCQGRGSAANSIV 424

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
             Y L +T+IDP+  ++L ERF++  R   PD D+DF   RR+EVI+Y+  KYG  R A  
Sbjct: 425  CYCLHVTEIDPVNMNMLIERFISRARNEPPDIDVDFEHQRREEVIQYIYTKYGRHRAALT 484

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             +  +  A++AL+DVG+AL +  S ++R+ K              +A+            
Sbjct: 485  ASLITYHARSALKDVGKALGLEASLIERISKSQQWWDGTDAVAGYLAE----AGFDANSH 540

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
                L+ ++ +L    RH S H  G VI    LS+LVP+      D  V +++   I+  
Sbjct: 541  ITQNLIRLTGELRSFPRHLSQHVGGFVIAKDKLSRLVPIENATMKDRSVIEWDKDDIDAL 600

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQR--GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             L+K D L L  L+ ++++L+F+A R    K  +  IP +D   Y +     T+G+FQ+E
Sbjct: 601  KLLKVDVLALGMLSAIRRALEFVALRRGFPKFRVQDIPREDRAVYEMCGHADTIGVFQIE 660

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPML 682
            S   +  L  ++P+   D++  V++ RPGPI   +   Y  RK G E +      + P+L
Sbjct: 661  SRAQQSMLPRLKPNKYYDLVIEVAIVRPGPIQGGMVHPYLRRKQGLEPVDYAKDELRPVL 720

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGI 741
            + T GV I+QEQVM +A + + YS  +AD LRRAM    +   + K ++       K G 
Sbjct: 721  ERTLGVPIFQEQVMHLAMVAAEYSGEQADQLRRAMAAWRRSGNLAKYQKDLNKRMLKRGY 780

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
             +     I + +  F +YGF +SHAA++A++ Y +AW+K + P  FLA  +  +      
Sbjct: 781  EQEFIDRICKQIEGFGEYGFPESHAASFALLVYLSAWLKRYEPAAFLAGLLNSQPLGFYS 840

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----------------DNRIYYSLAAIKG 844
              +  QDA++  ++++PP V     +                       +   S   ++ 
Sbjct: 841  PSQLVQDAKRHGVKVLPPDVTLSDWESTFERRGHEGRRISSGETCLHRQQTVLSAQQLRD 900

Query: 845  VG----------TTTARHIMEA--------SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            +              A+ +            A  P   +     +  ++ +  R++ +  
Sbjct: 901  LSLRRLTVSRTVRRAAQRLTARVFQPSDTYGARGPAVRIGMHLIKGLAQGVAERIMAARN 960

Query: 887  FAGALDCFGYSRMQLLQ--------------SLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
             A   D    +R   L               S+   ++ A W    +      +   +  
Sbjct: 961  DAQFTDVDDLARRAALTRRDLEALAAANALVSIAGHRREAWWAVTAQHTVPRLL--RDAP 1018

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                 + L + +     V   ++   LG   + HPL + +  L +   +   E  A   G
Sbjct: 1019 IAEAPLALPQAAESREIV---DDYASLGLTLNRHPLALLRARLARQRFRSAAELAACQHG 1075

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               R   +V  +Q+  T  G+   +V+  +         +P
Sbjct: 1076 TLARACGIVTVRQRPGTANGT--VFVSIEDETGSINVIVWP 1114


>gi|116878540|ref|YP_357154.2| DNA polymerase III subunit alpha [Pelobacter carbinolicus DSM 2380]
 gi|114843176|gb|ABA88984.2| DNA polymerase III, alpha subunit [Pelobacter carbinolicus DSM 2380]
          Length = 1047

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/1039 (28%), Positives = 460/1039 (44%), Gaps = 98/1039 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VHS++S   G  S   +     A     +A+TD N ++    F + A  AGI P+
Sbjct: 35   FTHLHVHSAFSPNWGIHSPATLCAAAKAAGMTRLALTDRNGMYGIPCFLEAAQKAGIAPL 94

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            I                 G          VLL    +GY  L  L+S ++          
Sbjct: 95   I-----------------GAEAVSGSQRAVLLARNQDGYANLCRLLSALHDPQPF----- 132

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              L+       EGL +L+                      L    +   + L+V      
Sbjct: 133  -DLAVALATWREGLYILS-----------------DNAAVLGRLAEQSREGLFVETSPGH 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVT 249
              ++        LA    LP VAT+ ++FL   D + H VL A+A +T +S+        
Sbjct: 175  RMEQAMF-----LARRLGLPPVATSRAVFLQNADIKTHRVLRAIAGNTTLSRLSAETCAG 229

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P  +L+  +++ + F   PEALEN   IA  C       A I PRF         ++   
Sbjct: 230  PADFLRAETDLKAAFPHYPEALENAARIADNCQTNWDFSATIFPRFRG----LADQQAST 285

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L  +A  G   R  +              RL  EL +I    F+ YFL+V +  + +  
Sbjct: 286  LLERRAHEGAIRRYGEMNTK-------IAARLSKELTIIRDKGFAHYFLVVQELAKRS-- 336

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
               P   GRGS A S+ AY L IT +DPLR++L FERFLN  R+  PD DIDF  D RD 
Sbjct: 337  ---PRTCGRGSAAASLVAYCLGITHVDPLRYNLFFERFLNKGRIDPPDIDIDFPWDERDA 393

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V+ +   +YG++R A +      +++ ALR+V +   MP  ++  + + + +  +     
Sbjct: 394  VLDFAFQRYGNQRAAMVANQVGFKSRGALREVAKVFGMPADEIKTITRRLSSHWSIQRGT 453

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +A+     FR   L+      +L I+ +L G  RH S H  G+VI    + Q VP     
Sbjct: 454  KAMDSHPLFRGESLSS-DWQDILAIATRLNGQLRHLSQHCGGLVIVPDDIRQYVPTEVSA 512

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS---LIPFDDH 606
            +   P+ Q+     E AGL+K D LG ++L +++ +L  +       ++      P  D 
Sbjct: 513  K-GRPLIQWEKDQTEAAGLVKIDILGNRSLAVIRDALTAV-HHHTGNNIDYRNWQPLTDA 570

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGM-----QPDC---IEDIIALVSLYRPGPIDNI 658
            +T  LL +  T+G F +ES   RQ L+ M      PD     E ++   S+ RP   + I
Sbjct: 571  KTRALLCSGDTIGCFYIESPATRQLLKKMWGNRPMPDEDTLFEHLVMASSIIRPAANNVI 630

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  R +GK     +HPL++P+L ET G+ +YQEQ+ QIA  LSG+S SE D LR+ + 
Sbjct: 631  REFVARMHGK-PWHHLHPLLEPILDETYGLAVYQEQITQIAMALSGFSASEGDRLRKIIS 689

Query: 719  KKIKEE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KK K + +D  ++RF+ G ++NGIS  +   I++ +  FA Y F K H+A+YA++S + A
Sbjct: 690  KKDKGKTLDDYRQRFMQGGNRNGISAAVLKKIWQQVLSFAGYSFCKPHSASYALVSCKAA 749

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K ++P EF+AA ++           +  +AR+  + I+ P +NT    ++  D  +  
Sbjct: 750  WLKANHPAEFMAAVIS-NGGGYYTPLGYLSEARRMGLHILTPDINTSDRAYRGKDRDLRI 808

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L  I  V   T   I+ E   + PF   E+F  R+    L    ++ L+ AG  D    
Sbjct: 809  GLMQIAAVAQATIEVILNERRKNGPFSDYENFLWRLPH--LPVADIKQLIKAGCFDALEG 866

Query: 897  S--RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            S  R  L+  L         +++      + +F  E          +  +++        
Sbjct: 867  SEQRPGLIWRL-------LQLQRGPATAADTLFVTEPEPPPVLPPYDAVTLQT------Q 913

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E   LG     HPL  Y   +R  G     E    I G +I L    V+ +  +T KG  
Sbjct: 914  ELETLGMPVGSHPLVPYAEAIRSSGAVPAAELSRWI-GRHITLVGWWVTGKPVRTVKGQP 972

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + +VTF +    ++A FFP
Sbjct: 973  MEFVTFEDATALFDATFFP 991


>gi|293605789|ref|ZP_06688163.1| error-prone DNA polymerase [Achromobacter piechaudii ATCC 43553]
 gi|292815838|gb|EFF74945.1| error-prone DNA polymerase [Achromobacter piechaudii ATCC 43553]
          Length = 851

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/825 (28%), Positives = 378/825 (45%), Gaps = 35/825 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  LQ  S++S L+GA     ++ + A     A+A+TD  +L   +    +A    + 
Sbjct: 19  PGYAELQCQSNFSFLQGASHPEELVARAAELGYAALALTDECSLAGVVRAHTEAKTQKLP 78

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            +IG    +              P      + LL  T EGY  L EL++        K  
Sbjct: 79  LLIGATFQL-----------RAAPDAAPLGLTLLAQTREGYGNLSELITLARTR-APKGE 126

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            R+    L         +        I    +   +    ++     ++F +R +V L  
Sbjct: 127 YRLAPDDLTHPPKGYAHLAQVPECLAILTPAYGTDADRLAEQARWLARVFPNRAWVGLNL 186

Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
            +R  D    + V   A   +LP+VA              HD L  +     V++     
Sbjct: 187 LYRSRDDQHRAAVEHAARQAQLPIVAVGQVQMHVRSRKPLHDTLTGIRTRQPVARCGYEL 246

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L+ R  + +++   PEAL  T+ +ARRC+F L       P  I          
Sbjct: 247 SENAEQHLRTRMRLANLYP--PEALAQTLVVARRCAFSLDELHYEYPDEIVPAG----HT 300

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               LR + +AG   R   G        ++   +++ EL++I  +++  YFL V D +Q+
Sbjct: 301 PATYLRQETLAGAARRFPAGV------PENVAGQIEKELDLIGELRYEAYFLTVYDIVQY 354

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A+   I +  GRGS A S   Y L IT +DP R + LFERF++ +R   PD D+DF   R
Sbjct: 355 ARSQGI-LCQGRGSAANSAVCYCLGITAVDPARGNNLFERFISKERNEPPDIDVDFEHQR 413

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EVI+Y+ +KYG +R A      S + ++ LRD G AL +    +D + +         
Sbjct: 414 REEVIQYIYDKYGRDRAALTAVVISYRPRSVLRDTGSALGVDLGVIDAVARAHQWWDGKK 473

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             L+ +       E+R+A     +   ++Q + G  RH S H  G VI    LS+LVP+ 
Sbjct: 474 EMLRTLGACGLDPESRVA----RQWASLAQTMMGFPRHLSQHPGGFVISRGKLSRLVPIE 529

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                D  V Q++   ++   L+K D L L  L+ L+++L+   +R    + L  IP  D
Sbjct: 530 NAAMQDRSVVQWDKDDLDALKLLKVDVLALGMLSALRRTLELAGERRGQPLALQDIPEGD 589

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
             TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +   Y  
Sbjct: 590 TATYDMICDADTVGVFQIESRAQMTMLPRLRPRKYYDLVVQVAIVRPGPIQGGMVHPYLR 649

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
           R+ GKE        +  +L  T GV I+QEQVMQIA + +G++  EAD LRR+M   K K
Sbjct: 650 RRQGKEDETYPSEKVRGVLSRTMGVPIFQEQVMQIAVVAAGFTPGEADQLRRSMAAWKRK 709

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             +DK + + + G   +G     A  +F  +  F +YGF +SHAA++A+++Y ++W+K H
Sbjct: 710 GGVDKFRIKLVGGLLAHGYKLEFAEALFRQVEGFGEYGFPESHAASFALLAYFSSWLKRH 769

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            P  FLAA +  +        +  QDAR+  + ++P  V     +
Sbjct: 770 EPEAFLAALLNSQPMGFYAPAQLVQDARRHGVCVLPADVTVSGWE 814


>gi|192290399|ref|YP_001991004.1| error-prone DNA polymerase [Rhodopseudomonas palustris TIE-1]
 gi|192284148|gb|ACF00529.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris TIE-1]
          Length = 1195

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/907 (25%), Positives = 385/907 (42%), Gaps = 75/907 (8%)

Query: 170  RLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             L     L  D +++ L   +RG D+ R +++ ++A    +P +ATN+ L+         
Sbjct: 214  ALERLTALNADAVWLGLTPYYRGDDKRRLARLRRIAAAARVPCIATNDVLYHHPRRRALQ 273

Query: 229  DVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            DVL  V   T + +  R      + +LK  +EM  +F   PEA+  T+  A R SF L  
Sbjct: 274  DVLTCVREKTSIDKAGRRLEGNAERHLKPAAEMARLFRADPEAIAETLRFANRISFTLDE 333

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                 P           K  +  L +    G+      G   K       +  +  EL +
Sbjct: 334  LKYHYPDEPVPPG----KTAQQHLEDLTREGIAAYFPNGISDK------LQATIAKELAI 383

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I R  ++ YFL V D +++A+  +I +  GRGS A S   Y L IT +DP    LLFERF
Sbjct: 384  IERRGYAHYFLTVHDIVRYARSQDI-LCQGRGSAANSAVCYVLGITCVDPTEIDLLFERF 442

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            ++ +R   PD D+DF   RR+EV++Y+  +YG  R A + T    + ++A+RDVG+AL +
Sbjct: 443  VSEERDEPPDIDVDFEHSRREEVMQYIYRRYGRHRAAIVATVIHYRPRSAIRDVGKALGL 502

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHA 525
                   L   +       +      ++ + R+A L   +P + R +E++ +L G  RH 
Sbjct: 503  SEDVTAALADTVWGSWGKGL------NEMQVRQAGLDPHNPMIGRAVELATELIGFPRHL 556

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            S H  G V+    L   VP+      D    +++   I+   ++K D L L  LT ++K 
Sbjct: 557  SQHVGGYVLTQDRLDSYVPIGNAAMEDRTFIEWDKDDIDAVKMMKVDVLALGMLTCIRKG 616

Query: 586  LDFLAQRG-VKVDLSL-IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
               +AQ   V+  LS     DD+  Y +L    ++G+FQ+ES      L  ++P C  D+
Sbjct: 617  FHLIAQHKGVRFQLSDIKSEDDNAVYKMLQRGESIGVFQVESRAQMNMLPRLKPRCFYDL 676

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQE 693
            +  V++ RPGPI  D +  Y  R+NG+E +V   P         +  +L +T GV ++QE
Sbjct: 677  VIEVAIVRPGPIQGDMVHPYLRRRNGQEPVVYPSPSGEAGDKNELQQILGKTLGVPLFQE 736

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            Q M+IA   + ++  EA+ LRRAM   +    + K + + I    K G   T A N FE 
Sbjct: 737  QAMRIAIEAAHFTPDEANQLRRAMATFRNVGTIGKFEAKMIGNLVKRGYDATFAKNCFEQ 796

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  F  YGF +SHAA++A + Y +AWMK  +P  F  A +  +        +   DAR  
Sbjct: 797  IKGFGSYGFPESHAASFAKLVYVSAWMKCEHPDAFCCALLNSQPMGFYAPAQIVGDARSN 856

Query: 813  NIQIMPPSVNTPCVDFKVG-----DNRIYYSLAAIKGVGTTT------------------ 849
             +++ P  V+       +       + +      I G                       
Sbjct: 857  GVEVRPVDVSFSEGQCTLEERCGRHHAVRLGFRMIDGFRWADPDEERVQLEAGEPPSDDW 916

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+ A A   F SLE F        +++R L  L  A A    G  R   L ++  + 
Sbjct: 917  AARIVTARARGAFSSLEQFAR---ITAMSKRALILLADADAFRSLGLDRRAALWAVRRLP 973

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                            +F                     +     + + +     GHP++
Sbjct: 974  DDV----------PLPLFEAASAREQQDEHAAPLPAMPMAEHVVADYQTVRLSLKGHPME 1023

Query: 970  VYKPILRKMGIKGYEESVATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
              + +     +    E   + +   G  +R A +V+ +Q+  +  G  + ++T  +    
Sbjct: 1024 FLRALFAAERVVTCRELSRSEQRASGRWLRCAGVVLVRQRPGSANG--VIFMTIEDETGI 1081

Query: 1027 YEANFFP 1033
                 +P
Sbjct: 1082 ANIVVWP 1088



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 20/134 (14%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE----FSQKAC 63
           S  +  + V +++S LEG     + + + +     AI I D N L   +     F  +  
Sbjct: 2   SARYAEIGVTTNFSFLEGGSHPQDYVHEASRLGLDAIGIADRNTLAGVVRAFSEFDNEEL 61

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
               + +IG +L                     P ++   +    Y RL  L+S   L  
Sbjct: 62  IHKPKLLIGTRLCFA---------------DGTPDLLAYPTDRAAYGRLCRLLSAGKLR- 105

Query: 124 QGKQSVRICLSWLQ 137
            GK    +  + L+
Sbjct: 106 AGKGECHLTFADLE 119


>gi|84496189|ref|ZP_00995043.1| putative DNA polymerase III alpha subunit [Janibacter sp. HTCC2649]
 gi|84382957|gb|EAP98838.1| putative DNA polymerase III alpha subunit [Janibacter sp. HTCC2649]
          Length = 1282

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/1160 (25%), Positives = 486/1160 (41%), Gaps = 153/1160 (13%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL V S YS+  GA +  +++++ A D QPA+A+TD + L+ A+ F+     AGI
Sbjct: 2    NPDFVHLHVASGYSMRFGASTPEDLVERAADDGQPALALTDRDGLYGAVRFAMACGKAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMT--------NQGKTPFPTVPSIVLLVSTAE-------GYQRL 112
             PI+G  L +  +                G      +P + +L            G+  L
Sbjct: 62   APILGVDLAVGAEPVPGRPVRKVRTPVRGGAVVDQRLPRVTVLARGRAAGTGRGLGWAAL 121

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEG----------------------------- 143
              LV+  +L  + +         L      G                             
Sbjct: 122  CRLVTDTHLRGE-RGQPVTLPDLLARWCRGGDPSSTTDFVPRTDNSLALAVRAGHEVEEP 180

Query: 144  --LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRHRGYD-----RY 195
              L +L G  S  + RA        A   L  ++ +   D L + +  + G +     R 
Sbjct: 181  SRLRVLLGPDS-DVGRALLARRPTEARALLERWRAILPPDALAIEIVGNGGPEGTPGSRV 239

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
                ++ LA    +P + T        +     D+L A     V+  +   RVT   +L 
Sbjct: 240  HARHLLGLADEARVPAILTAAVRHADRDGVRTVDILDAARRLVVLDSRHLDRVTDAGHLA 299

Query: 256  NRSEM----VSIFSDLPEA---LENTVEIARRCSFILQVHAPILPRFIEKE---CDDIQK 305
               EM    + +  D   A   +  T+ +A  C    +    I    + +      +   
Sbjct: 300  TSEEMWLRALEVTGDNGRAAQLIGATLALADECVLDARADLGIGAVHLPEPSILGIEAGV 359

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +    L  +  A +  R      A  +       RLD EL VIA + +  YFL VA+   
Sbjct: 360  DPHQVLTERCRAAVNGRFPALGDAARHT---VLSRLDDELRVIADLGYPTYFLTVAEVTD 416

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
              K   + V   RGSGAGS+  Y L I+ +DP+R  LL ERF +P R  +PD DID    
Sbjct: 417  LIKARGVRVA-ARGSGAGSLVNYLLGISGVDPIRHDLLMERFCSPLRAELPDIDIDVESA 475

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR E+   + +++G ERV  +    + + + A+RDVG AL MP  ++D + K  P+  A 
Sbjct: 476  RRTEIYEAILDRFGGERVTCVSMMDTYKVRHAVRDVGAALGMPPIEIDEIAKAFPHIRAK 535

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                 AIAD    R   L  P ++   E+ ++L+GL RH + H  G+V+ +  L    P+
Sbjct: 536  DAR-SAIADLPELRSRGLDAPRLNTFFELVERLDGLPRHIALHPCGVVLSNAGLLDRTPV 594

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI--- 601
                    P++ F+   +E  GL+K D LG++  + +  ++  + +  GV+VDL      
Sbjct: 595  E-ASWLGFPMSHFDKDDVETLGLLKLDVLGIRMQSAMAHAVAEVRRVDGVEVDLDDETQV 653

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIV 659
            P +D  TY L+ +  TLG FQ+ES G R+ +    P+   D+I  +SL+RPGP   D I 
Sbjct: 654  PLEDPATYRLIRSTHTLGCFQIESPGQRELIGKFGPERFGDLIIDISLFRPGPVKSDMIR 713

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +   ++G  K   +HP + P L ET+GV+++ EQV++I    +G +L++AD +RR MG 
Sbjct: 714  PFLESRHGWSKPQLLHPTLVPALAETEGVVVFHEQVLRIVAETTGVTLAQADEVRRTMGS 773

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             K +EE++     +   A   G +      I+ +L  FA +GF K+HAAA+A+ +Y +AW
Sbjct: 774  PKGQEEIE---AWWRPAARARGYAPADVDLIWSVLKSFASFGFCKAHAAAFALPTYHSAW 830

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI--- 835
            +KTH+P  FLA  +T +     K +    DAR   I ++   VN     +++        
Sbjct: 831  LKTHHPAAFLAGVLTHDPGMYPK-RLILDDARSLGIAVLGLDVNGSGDTYRIERLECGGE 889

Query: 836  ------------------YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
                                SL  +KG+       I+ A   +PF +L DF SR     +
Sbjct: 890  SDFVPVHPDLPDASDYGIRLSLTDVKGISGAEVASIVAA---QPFSNLGDFWSRA---TV 943

Query: 878  NRRVLESLVFAGALDCFG--------------YSRMQLLQSLDNIQKY------------ 911
            +R ++E LV AGA D                  +R  LL  +  + ++            
Sbjct: 944  SRPIVERLVMAGAFDSMHGIGGSGSGLGRRGRITRRDLLLHVGELDRWERASTGRSSRRR 1003

Query: 912  ------AQWVEKN-------------RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                  A    +                         + G   +            + R 
Sbjct: 1004 IPPPALASDQVRERAAAQSQAARPVVAAADQSVQLTLDLGDRPELTPGTGLPEMTGTERV 1063

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              E  VLG   S H ++ Y P+L  +G+    + + +   + + +A + V+ Q    R G
Sbjct: 1064 RAELDVLGLDASAHVVEFYGPMLDALGVVRSRDLLRSRSNSEVWVAGVKVATQTPPIRSG 1123

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
             R+ ++T  +     +A FF
Sbjct: 1124 RRVVFLTLDDSTGPVDATFF 1143


>gi|254391191|ref|ZP_05006397.1| DNA polymerase III alpha subunit [Streptomyces clavuligerus ATCC
            27064]
 gi|294813650|ref|ZP_06772293.1| DNA polymerase III alpha subunit [Streptomyces clavuligerus ATCC
            27064]
 gi|326441944|ref|ZP_08216678.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC
            27064]
 gi|197704884|gb|EDY50696.1| DNA polymerase III alpha subunit [Streptomyces clavuligerus ATCC
            27064]
 gi|294326249|gb|EFG07892.1| DNA polymerase III alpha subunit [Streptomyces clavuligerus ATCC
            27064]
          Length = 1213

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/1084 (25%), Positives = 451/1084 (41%), Gaps = 84/1084 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL V + YS   GA     ++ + A      +A+TD + +   + F++ A   G++ 
Sbjct: 3    GFAHLHVATGYSARYGASHPRELVARAAERGMEVLAVTDRDGVAGVVRFAKAARGGGVRA 62

Query: 70   IIGCQLDID-----MQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLD 123
            + G  + ++      +  ++   +G       P  I LL     G+  L  LVS  +   
Sbjct: 63   VFGVDMGVEAFVPGREAVVRAPVRGGAYVREPPLRITLLARDPRGWAELCRLVSAAHAR- 121

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                   I           GL +L G  S    RA      + A + L  ++ L GD L 
Sbjct: 122  PVDGHPVIPREAFTAAADTGLTVLLGPLS-EPARALAAGRDESAARLLTAWRALAGDGLR 180

Query: 184  VNLQRHRGYDR-----YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +    H             ++ + L     +P+V TN   +   E +   DVL A     
Sbjct: 181  LEAVHHGRPGAGPGSLRLAARTLLLGDRLGIPVVLTNAVRYADPEQHRLADVLDAARLLR 240

Query: 239  VVSQKDRPRVTPDHYLKNRSEMV-------SIFSDLPE----ALENTVEIARRCSFILQV 287
             + +      + + +LK+ + M              PE     +  T   A  C      
Sbjct: 241  PLDRDRLD--SGERWLKDPAAMRTAAGLIAGAAGLGPERADRLITETGATAEECVLDPGT 298

Query: 288  HAPILPRFIEKECDDIQKEEENE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
               +  R + +      ++  +    LR +  AGL  R             + R+RL  E
Sbjct: 299  GLGLGRRHLPEPWAVGARDAADAVRVLRGRCAAGLVRRGLD-------RDPEARRRLAQE 351

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L +IA +    YFL VA  +   ++  I V   RGSGAGS+  + L I   +PL   LLF
Sbjct: 352  LALIAELGLDTYFLTVAQVVADIRERGIRVA-ARGSGAGSMVNHVLGIATANPLDHRLLF 410

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFL+  R  +PD D+D    RR E    +  ++G ERVA      + +A+ ALRD   A
Sbjct: 411  ERFLSRQRTDLPDIDLDVESARRLEAYDRIIERFGRERVALAAMPETYRARHALRDTALA 470

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L +  ++ DR+ K  P+  A  ++  A+AD    R    A      LL +++ L+ L R 
Sbjct: 471  LGIAPAEADRMAKAFPHIRARDITA-ALADLPELRGLAAASAPYRLLLTLAEGLDALPRG 529

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             + H  G++IGD  L   +P+        P+ Q +   IE  GLIK D LG++T + +  
Sbjct: 530  IAMHPCGVIIGDASLRARLPVQPTPTGGYPMVQADKHDIEDLGLIKLDVLGVRTQSAMAH 589

Query: 585  SLDFL----AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +   +     +R    D   +P DD   + ++    TLG+FQLES G    L  MQP   
Sbjct: 590  ATAEIERVTGRRIDLDDPRQVPLDDPFAFRMIQASDTLGMFQLESPGQMDLLARMQPRDP 649

Query: 641  EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
             D+IA +SL+RPGP+   +   Y   ++G       HP + P+L +T GV+I+ EQ+++I
Sbjct: 650  RDVIADISLFRPGPVAGGMPERYVAARHGG-PPSYPHPDLVPVLSDTYGVVIWHEQIIEI 708

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
             ++L+G     AD +RRA+G + +  +   +E F   A+  G S  +   ++  +  F  
Sbjct: 709  LRVLTGCDRGYADHVRRALGDRAR--LPGIREWFHRRAAARGYSPAVRDEVWGTVESFGA 766

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGF ++HA A+AV + QTAW+K H+P    A  +  +     K +    DAR+ +I ++P
Sbjct: 767  YGFCRAHAVAFAVPALQTAWLKAHHPAALYAGLLEHDPGMWPK-RVIVADARRHHIAVLP 825

Query: 819  PSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
              +N       V     G   +  +L+ + G+       I    A +P+ SL D   R  
Sbjct: 826  VDINRSRPTHTVERAPDGTWGVRLALSDVHGISRAEVTRIA---AGQPYISLTDLWRRAH 882

Query: 874  SKKLNRRVLESLVFAGALDCF---GYSRMQLLQSLDNIQKYA------------QWVEKN 918
                 R   E L   GAL      G +R  LL  +  + +              Q   + 
Sbjct: 883  PT---RPTAERLADIGALSPLAGDGVTRRDLLLRIAELHRDHQRHREHRRHPGHQGGHRG 939

Query: 919  RTNKHENI-FAHEKGTFSDKIT---------LEKFSVENSSVRFENEQRVLGFYFSGHPL 968
            RT     + F +      D             +           + E RVLG   S H +
Sbjct: 940  RTAGDGQLTFENVPDNVPDNAPNNVPYGENGPDGLPEMTGREALDAELRVLGIDVSRHLM 999

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            D  + +LR++G            G+++ +A +  + Q      G RI +VT  + +   +
Sbjct: 1000 DHQRRLLRELGATDARRLGGLRAGDSVLVAGVRAATQTPPIPSGKRIIFVTLDDGSGLVD 1059

Query: 1029 ANFF 1032
              FF
Sbjct: 1060 LAFF 1063


>gi|302037566|ref|YP_003797888.1| DNA polymerase III subunit alpha [Candidatus Nitrospira defluvii]
 gi|300605630|emb|CBK41963.1| DNA polymerase III, alpha subunit [Candidatus Nitrospira defluvii]
          Length = 1033

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1049 (27%), Positives = 480/1049 (45%), Gaps = 117/1049 (11%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL  HSSYS + G  +L  +        Q  +A+TDTN L+ A+ F + A  AG+
Sbjct: 2    SSGFVHLHTHSSYSPMWGIPTLEALCQAARTQGQDRLALTDTNGLYGAIRFLEVAQHAGL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PII                 G          VLL  T  GY  L  L+S  +       
Sbjct: 62   KPII-----------------GAELVHEAHRAVLLAKTPAGYANLCRLLSVRHEESTF-- 102

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                C++ +      GLI+L+   S                  L  ++K   + LYV L 
Sbjct: 103  ---DCIAAVARY-RAGLIILSDDLS-----------------ALRAWRKDSQEDLYVELS 141

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246
                       + +  +  + LP VAT  + FL   D+E H +L A+A +T +S+     
Sbjct: 142  PGSDI-----QEALTFSRGNRLPPVATTRAAFLHPADFETHRLLRAIADNTTLSRLRPER 196

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               P H+L + + +      + EAL N+  IA  C         I P F +   +   + 
Sbjct: 197  CCAPSHWLMSPAGIERYLPHVSEALTNSRRIADDCFTDWTFKETIFPSFRQLSTEAAFES 256

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR K   G + R        G  ++  R R++ EL VI   +++ YFL+V + ++ 
Sbjct: 257  ----LRTKTYEGAQRRY-------GTLSEAVRHRIEVELAVIREKRYADYFLVVDEIVRE 305

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A     P   GRGS A S+ +Y L IT +DP+R +LLFERFLNP R   PD DIDF  D 
Sbjct: 306  A-----PRTCGRGSAAASIVSYCLGITHVDPIRHNLLFERFLNPGRHDPPDIDIDFPWDE 360

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH- 485
            R +++ +V  +YG ++ A +    +L A+AA+R++ +   +P +++ +   L+       
Sbjct: 361  RPKILEWVFARYGAQQAAMVANQNTLAARAAMREIAKVYGLPAAEIGKALDLLHRRADFV 420

Query: 486  ----PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                  +LQ  A +   R  +L  P  D L   + +L+G +RH S H  G+V+    + +
Sbjct: 421  NVTENSTLQTWASEV-CRALQLRPPWPDILFR-AGQLQGHFRHLSLHPGGVVLVPDEIRR 478

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVDL 598
             VP+     S  PV Q+     E AGL+K D LG ++L +++ +L  +     R +  +L
Sbjct: 479  YVPVETSA-SGWPVIQWEKDQAEDAGLVKIDLLGNRSLAVIRDALAAVHHNTGRLIDYEL 537

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM----------QPDCIEDIIALVS 648
               P  D  T  L+    T+G F +ES   R  L+ +            D  E ++ + S
Sbjct: 538  -WDPISDPVTRELIRRGETMGCFYVESPATRLLLKKLWTTMPQARRAHADVFEYLVVVSS 596

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            + RP        +  R +G     S HPL+D +L ET G+++YQE VM++A  L G+SL 
Sbjct: 597  IIRPAANVYADDFVRRSHGH-PYRSWHPLLDEVLAETHGIMVYQEDVMKVAVALGGFSLH 655

Query: 709  EADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            + D LR+ + KK KE ++   + +F  GA+   + ++    I+ ++  F+ Y F K H+A
Sbjct: 656  DGDQLRKILSKKHKERQLRDYQRQFYEGAAARDVHRSTIDKIWAMIMSFSGYSFCKPHSA 715

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            +YA +S+++A+++ HYP EFLAA ++ +         +  + R+  + I+PP +N     
Sbjct: 716  SYAQVSFKSAYLRAHYPAEFLAAVISNQGGYYSAFA-YLSEGRRMGLTILPPDINVSDWP 774

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886
            ++  +  +   L  +K +    A+ I+    D   + SL+DF  RV+ +     +L   +
Sbjct: 775  YRGSNRAVRVGLMQLKALRKEFAQRIVVERQDHGAYRSLQDFLVRVNPEIAQATLL---I 831

Query: 887  FAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
             AG  D      +R  L+                       +FA + G  +  + +    
Sbjct: 832  KAGCFDSIAGELTRPALIW---------------------RLFAAQSGKPAGYLPIP--P 868

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   +  +E  + GF  S HPL+++K ++  +      +  A   G ++ L   +V++
Sbjct: 869  DYSPQQKLSHELELFGFPLSEHPLELFKDVVASLSYLPARDL-AKHVGKHVTLLGWIVTE 927

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +   T++G  + +VTF +    Y+A FFP
Sbjct: 928  KIVSTKQGEPMEFVTFEDQTSLYDATFFP 956


>gi|271965758|ref|YP_003339954.1| DNA polymerase III subunit alpha [Streptosporangium roseum DSM 43021]
 gi|270508933|gb|ACZ87211.1| DNA polymerase III, alpha subunit [Streptosporangium roseum DSM
            43021]
          Length = 1152

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1094 (25%), Positives = 473/1094 (43%), Gaps = 98/1094 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+V S +SLL GA     ++ +       A+A+TD ++L  A+ F+     AG++P+
Sbjct: 6    FVHLRVASGFSLLHGASRPQALVARAGGLGMSALALTDRDSLAGAVRFATACRTAGVRPV 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTV--PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             G  L ++   +    ++ +     V    +  L   A G+  L  ++S  +  D  +  
Sbjct: 66   FGADLAVEGARSAAAPHRDRLRGEDVGRCRVTFLARDASGWSALCRMISAAHAAD--RDE 123

Query: 129  VRICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNL 186
              +    L    G  GL++L G  S  +  A     +  A KRL  +++ +  D + + +
Sbjct: 124  PVLSRQALAAHAGRGGLVVLLGPDS-DVGGAIVDRDAGTALKRLRAWQEGIGRDAVRLEI 182

Query: 187  QRH----RGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
              H     G      + +++  A    L  V TN   +         DVL A  H   + 
Sbjct: 183  VCHLSPGPGPGSLVLAGRMLAFAARQRLVPVLTNAVRYAERSGARVGDVLAACRHRLPIG 242

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLP-----------EALENTVEIARRCSFILQVHAP 290
            +        + YLK+ +EM  +   +              L  T+  AR C+        
Sbjct: 243  RAR--HANAEAYLKSPAEMTRVAEQVAAVAGLPAAAAGRLLACTLATARACTLDPVADLG 300

Query: 291  ILPR---FIEKE--CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            I  R   F E      D     +  +R +  AGL  R            +   QRL  EL
Sbjct: 301  IGDRRVHFPEPYLLGADPAGAADGVMRARCEAGLNARGMGA-------DRVALQRLQEEL 353

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VIAR+ ++ YFL VA+     +   + V   RGS AGS+  YAL I+ +DPLR  LL E
Sbjct: 354  AVIARLGYAPYFLTVAEITDMIRAMGVRVA-ARGSAAGSLAVYALGISGVDPLRHGLLME 412

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFL+  R S+PD D+D    RR EV R +  +YG ERVA +    + + ++A+RD G AL
Sbjct: 413  RFLSTRRRSLPDVDLDVESARRPEVYRAILGRYGPERVAAVSAAATYRVRSAIRDAGAAL 472

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
             +   ++D L    P+  A      A+A+  +     +    +  L ++ + L+GL R  
Sbjct: 473  GVDAGEIDALATAFPHIRARDARR-AMAELPQLAARGIRPDRLRLLWDLVEALDGLPRRT 531

Query: 526  STHAAGIVIGDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            + H   I++ D  L    P+          L ++QF+   +E  GL+K D LG++  + +
Sbjct: 532  AMHPCAIIVSDATLLDRSPVQSVPAGAEGGLSMSQFDKDDVEALGLLKLDVLGVRMQSAI 591

Query: 583  QKSLDFLA----QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
              ++  +A          D + +P DD   + L+ +  T+G FQ+ES G R  L  ++P+
Sbjct: 592  AHAVAEIARVEGHSVAIDDPAQVPLDDPAAFALIRSAETVGCFQIESPGQRDLLSRLRPE 651

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
               D+I  +SL+RPGP+  D I  +   ++G+  +   H  + P+L ET GV+++ EQV+
Sbjct: 652  SFADLIIDISLFRPGPVAADMITPFLAARHGRAPVDLPHADLAPVLAETCGVVVFHEQVI 711

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            +I  +++G    +AD +RRA+      E ++ +  F + A+  G    +   ++  LA F
Sbjct: 712  RILAIMTGCDPGQADEVRRALA--DGGEAERARTWFTAVATDRGYDPGVVERVWRTLAGF 769

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
              +GF K+HAAA+A+ + Q+AW+K H+P  F AA +T +     K +    DAR+  + I
Sbjct: 770  GSFGFAKAHAAAFALPTLQSAWLKAHHPAAFYAAVLTHDPGMYPK-RLLLADARRHGVTI 828

Query: 817  MPPSVNTPCVDFKV-----------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
            +P  VN     +++           G   +  +LA +KG+       I+   A +P+ SL
Sbjct: 829  LPLDVNHSAGPYRIEPLPRAGDTACGRFGVRLALADVKGITGAEVARIV---AGRPYTSL 885

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCF-------------GYSRMQLLQSLDNIQKYA 912
             D   R    + +  + E LV AGALD               G +R  LL  +  + ++ 
Sbjct: 886  ADCWQRA---RPSLPIAERLVLAGALDALHGLSHGRGRRAGSGLTRRDLLIQVGELHRWT 942

Query: 913  QWVEKNRT--------------NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
                +                    +   A        +  L   S  +       E  +
Sbjct: 943  SASSRRPARRGSARPPVETGDGTAQQLPLALGAAETPRRNGLPDMSDAD---LVAAELDI 999

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG   S H +  Y P+LR + +           G  + +    V+      R G RI + 
Sbjct: 1000 LGLDASRHLITDYHPLLRALAVTASSRLRGCSDGALVLVGGAKVAIATPPIRSGRRIMFC 1059

Query: 1019 TFSEPAKEYEANFF 1032
            +  +     E  FF
Sbjct: 1060 SLDDGTGITEVTFF 1073


>gi|113475557|ref|YP_721618.1| DNA polymerase III subunit alpha / intein [Trichodesmium erythraeum
           IMS101]
 gi|110166605|gb|ABG51145.1| DNA polymerase III, alpha subunit / Intein [Trichodesmium
           erythraeum IMS101]
          Length = 2684

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/733 (35%), Positives = 402/733 (54%), Gaps = 66/733 (9%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+      PAIA+TD   ++ A++  +      I+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPQLIDRAVELGMPAIALTDHGVMYGAIQLIKLCRNKNIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +   D  K     K         V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62  IIGNEMYVIKGDIEKQQRGKK------FHQVVLAKNTQGYKNLVKLTTLSHLHGFQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L++   EGLI+ +G  +G + +       + A+K    +K LFG+  Y+ 
Sbjct: 116 FARPCINKELLEKYH-EGLIVTSGCLAGEVPQNIMRGELEEAKKIAKWYKDLFGEDYYLE 174

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR   + +V +A   ++ +VATN+S F+S  D EAHD L+ +    +++++ 
Sbjct: 175 IQDHGFQEDRVVNTGIVTIAKKLKIKIVATNDSHFISCRDVEAHDALLCINTQKLIAEEK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRC-SFILQVHAPILPRFIE 297
           R R +   YLK+  EM  +F D      + EA+ NT+E+A +  ++   +  P +P +  
Sbjct: 235 RMRYSGTEYLKSAEEMKQLFRDHLENEVIEEAIANTLEVANKVKAYEGILGEPRIPDYPI 294

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                     +  L   A +GL  RL      K   +  Y++R++ EL V+    FS YF
Sbjct: 295 PP----DHNADTYLEKLAWSGLLERLK--LKQKSEISPIYKERMETELKVLQDKGFSTYF 348

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           L+V D+I++A+ NNIPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP+R SMPD
Sbjct: 349 LVVWDYIKYARDNNIPVGPGRGSAAGSLVAYSLRITNIDPVHHGLLFERFLNPERKSMPD 408

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D DFC + RD +I+YV  +YG ERVAQIITF  + +KA L+DVGR L + + + +++ K
Sbjct: 409 IDTDFCIENRDVMIKYVTQRYGEERVAQIITFNRMTSKAVLKDVGRVLGISFGEANKMAK 468

Query: 478 LIPNDPAHPVSLQAIADD----SRFREARLADP--------------SVDRLLEISQKLE 519
           LIP     P  L+ +  D      F++A                   SV + ++++ ++E
Sbjct: 469 LIPVARGKPAKLKVMISDETPSPEFKKAYDNQETPIEDNKAGKISTISVRQWIDMAIRIE 528

Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
           G  +    HAAG+VI   PL ++VP+ R+      +TQ++M+ IE  GL+K DFLGLK L
Sbjct: 529 GTNKTFGVHAAGVVISKEPLDEIVPLQRN-NDGSVITQYHMEDIESLGLLKMDFLGLKNL 587

Query: 580 TLLQKSLDFLAQRGVKV--------------------DLSLIPFDDHETYHLLTTKGTLG 619
           T++Q + + + +                         +   +P D  +TY L+ +    G
Sbjct: 588 TIIQNTAELIKKNHHLPLVPDDLPANERKAIEILAKGNTKKMPEDVKKTYDLIKSGDLEG 647

Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL 677
           +FQLESSGM   ++ ++P  IEDI ++++LYRPGP+D   I  + +RK+G EKI   HP 
Sbjct: 648 VFQLESSGMVDVVKKLKPTSIEDISSILALYRPGPLDAGLIPKFIDRKHGSEKIEYQHPK 707

Query: 678 IDPMLKETQGVII 690
           ++P+LKET GV+ 
Sbjct: 708 LEPILKETYGVLC 720



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 11/103 (10%)

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
              +      I +E+V  +    +   ++   ++   MGKK   EM+K +E+FI GA++ G
Sbjct: 2504 WDEIISIEYIGKEEVFDLTIPETHNFIANDFIVHNCMGKKKVSEMEKHREKFIDGAAQRG 2563

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +S  +A ++FE + KFA+Y            ++Y+T  M   Y
Sbjct: 2564 VSSVVAKDLFEQMIKFAEYC-----------LTYETEIMTVEY 2595



 Score = 44.2 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/29 (62%), Positives = 24/29 (82%)

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
              YQEQ+M++AQ L+GYSL EAD+LRR +
Sbjct: 2084 NCYQEQIMKMAQDLAGYSLGEADLLRRCL 2112


>gi|152967159|ref|YP_001362943.1| DNA polymerase III, alpha subunit [Kineococcus radiotolerans
            SRS30216]
 gi|151361676|gb|ABS04679.1| DNA polymerase III, alpha subunit [Kineococcus radiotolerans
            SRS30216]
          Length = 1320

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/1174 (24%), Positives = 488/1174 (41%), Gaps = 166/1174 (14%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P F HL V S YSL  G  +   ++ + A      +A+TD + L  A++F +    A
Sbjct: 3    TTAPPFPHLHVASGYSLRYGTSTPAALVARAADLGLATLALTDRDGLHGAVKFVRACVDA 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTP-------------------FPTVPSIVLLVSTA 106
            GI P++G  L      +     +   P                    P  P I  L   A
Sbjct: 63   GIAPVLGVDLATTPTGSATGLPEWADPSVAVRRRGSRAPVRGGSVVDPRWPRITALALGA 122

Query: 107  ------EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG-----LIMLTGGSSGPI 155
                   G+  L  LVS  +L   G++   +    L      G     ++ +  G    +
Sbjct: 123  DEAGAGRGWAGLCRLVSATHL--GGRRGTPVSSLELVAAHARGTDGRAVLAVLLGPGSEL 180

Query: 156  DRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRHRGYDR-----YRESQVVQLAYTHEL 209
             RA       +A   L  +++ L    L++ +  H             ++V+ LA    +
Sbjct: 181  GRAVLARRDDLARAVLRRWQEALPAGSLHLEVVCHHAPPGTAGSVEHAARVLGLAREAGV 240

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P V T        +     D+L AV     +  +   R T   +L   +EM    +D+  
Sbjct: 241  PAVLTAAVRSAEPDGALTADLLDAVRRLVPLGPRHLDRTTGQGHLLPSAEMARTAADVAR 300

Query: 270  ALENTVEIA------------RRCSFILQVHAPILPRFIEKECDDIQKEEEN--ELRNKA 315
            A  +    A             R      +         +     +  + +    LR +A
Sbjct: 301  AAGDPAAAADLLAATAVLAGRARIDPARDLGLG-RHHLPDPAALGLGDDVDQSALLRGRA 359

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
             A +  R      ++     + R+RLD EL +I ++ F+ YFL VAD     +   + V 
Sbjct: 360  EARIAARYPGAGASREA---EVRRRLDEELAIIEQVGFASYFLTVADVCDLTRAMGVRVA 416

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
              RGSGAGS+  + L I+D++PL   LL ERFLNP R  +PD D+D    RR++V R V 
Sbjct: 417  -ARGSGAGSLVNHLLGISDVEPLGHGLLMERFLNPRRGQLPDIDLDVESARREDVYRAVL 475

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
            +++G ERV  +    S + + A+RDVG AL +P ++VD +    P+      +  AIA+ 
Sbjct: 476  DRFGGERVTCVSMMDSYRVRHAVRDVGAALGLPPAEVDAIATAFPH-LRARDARAAIAEL 534

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
               R + L +  +    ++ ++L+GL RH + H  GIV+ +R L    P+    R   P+
Sbjct: 535  PELRRSGLGEERLSTFFDLVERLDGLPRHVALHPCGIVLSNRTLLDRTPVEASWR-GFPM 593

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----RGVKVDLSLIPFDDHETYHL 611
            +QF+   +E  GL+K D LG++  + +  ++  + +    R    D   +P DD  T+ L
Sbjct: 594  SQFDKDDVEDLGLLKLDVLGIRMQSAMAYAVREVERVEGVRIDLDDRQQVPLDDPATFRL 653

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKE 669
            + +  TLG FQ+ES G R+ +    P+   DI+  +SL+RPGP   D +  +   + G  
Sbjct: 654  IRSTRTLGCFQIESPGQRELVGKFAPETFHDIVVDISLFRPGPVKSDMVAPFLRARQGWA 713

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEMDKQ 728
                +   + P+L++T GV+++ EQV++I +  +G+ L+ +D  RR +G +  +EEM+ Q
Sbjct: 714  APEFLDDRLRPVLEQTHGVVVFHEQVIEIIRATTGHDLAVSDEYRRHLGTRQGQEEMEPQ 773

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
               F   A ++G  + +   I+E+L  FA +GF K+HAAA+A+ +YQ+AW+KTH+P  FL
Sbjct: 774  ---FKRRAVEHGYPEDVVARIWEVLKAFASFGFCKAHAAAFALPTYQSAWLKTHHPAAFL 830

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD---------------- 832
            A  +T +     K +    DAR   ++++   VN     ++V                  
Sbjct: 831  AGVLTHDPGMYPK-RLILDDARNLGVEVLGLDVNASGDTYRVEPVDLPGPRPAPHGQAAL 889

Query: 833  ------------------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
                                      I  SL+ +KG+       ++   A +P+ SL D 
Sbjct: 890  HPWPGWREGRDAEGLGEGVADGTGFGIRLSLSDVKGISAAEVSRLV---AGQPYRSLADL 946

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGY-----------------SRMQLLQSLDNIQKY 911
              R    + +R V E LV  GALD                     +R  LL  +  + ++
Sbjct: 947  WQRA---RPSRPVAERLVLTGALDSLHGLRPVGRAGEPAPRRGRTTRRDLLLQVAELDRW 1003

Query: 912  AQWVE---------KNRTNKHENI------------------------FAHEKGTFSDKI 938
             +                     +                         A + G   +++
Sbjct: 1004 TRSTAGPGPVRVPRAVAAGGPGPLDVRAAAAAQSRAARPVADPAGAVQLALDLGDAPEEV 1063

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
                      + R   E  VLG   S H +D Y P+LR +G+    E  +      + +A
Sbjct: 1064 APSGLPEMTGAERVRAELDVLGLDVSSHVVDFYAPLLRALGVTPARELRSRRNAAQLLVA 1123

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + V+ Q    R G R+ ++T  +     +  FF
Sbjct: 1124 GVKVATQTPPVRSGRRVVFLTLDDTTGPLDVTFF 1157


>gi|237732881|ref|ZP_04563362.1| DNA polymerase III subunit alpha [Mollicutes bacterium D7]
 gi|229384034|gb|EEO34125.1| DNA polymerase III subunit alpha [Coprobacillus sp. D7]
          Length = 1034

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/927 (28%), Positives = 471/927 (50%), Gaps = 75/927 (8%)

Query: 166  VAEKRLLTFKKLF-GDRLYVNLQRHRGY---DRYRESQVVQLAYTHELPLVATNNSLFLS 221
             A+K L  +  +F  + + + +  H      D    + +    +      VATN+  +L+
Sbjct: 12   DADKLLDEYTNIFGKNNVIIEISLHGIQSEKDFINSNWLQSKIFNEGYMYVATNDIYYLN 71

Query: 222  EEDYEAHDVLMAVAHSTVVSQK--DRPRVTPDHYLKNRSEMVSIFSDL----PEALENTV 275
            +E      + +++  +     +  +      + Y K   EM  +FS      P+ L N+ 
Sbjct: 72   KEHALHRSIGLSMNPNPDGIDEYSNYVDYNSEFYFKTEKEMEKVFSAYLHKYPDLLTNSE 131

Query: 276  EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA-QGAIAKGYHA 334
            +I ++C+  + +    LP F            E  L      G + +   + AI   +  
Sbjct: 132  KIVKQCNAQVPIER-ALPEFPLPNGF----SSEQYLYKLVWEGFKEKFPNESAIDNRFTL 186

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK------------------------- 369
            +DY++RL+ E + I +M F  YFLIV DFI W+K                          
Sbjct: 187  EDYKERLEHEFDTIVKMGFVDYFLIVQDFINWSKDIEVYKHPEVYFPHIELSKVSKMCIE 246

Query: 370  --NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDF    R
Sbjct: 247  KNFEIKVGPGRGSAAGSLLAYCLKITNLDPMKYDLLFERFLNPERVSMPDVDIDFSNRDR 306

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP---- 483
            ++V+ YVQNKYG+  VAQI+TF  L+ K+ ++ V ++  +PYS+ D + K+IP       
Sbjct: 307  EKVVEYVQNKYGYSHVAQIVTFQKLKLKSIIKKVAKSYGIPYSKTDEMTKMIPGKICVST 366

Query: 484  -AHPVSLQAIADDSR----------FREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
                 +++ +  +            F      D  +  + ++ + LEGL      HAAG+
Sbjct: 367  EKEDGTIEIVEKEPELLCEIENIDYFSNLINKDDDIKLVFKMGKVLEGLTSTTGKHAAGV 426

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            +IG +PL   +P+       + VTQF  K  E  GL+K DFLGL+TL ++Q++ + + + 
Sbjct: 427  IIGRQPLQSYLPLM--EVDGVLVTQFEKKASESIGLLKMDFLGLQTLDIIQETEELVKEN 484

Query: 593  GVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
              ++  ++ I  +D +T+ +     T  +FQ E +GM+  L+ M P  +E + A  +LYR
Sbjct: 485  YNQIIHINDISIEDEKTFEIFQKGNTGRVFQFEGAGMKNLLKQMHPTSLEHLNAACALYR 544

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+D I  Y   +    KI   H L   + +ET G+++YQEQ+MQ+ Q ++G+SL EAD
Sbjct: 545  PGPMDYIPNYIEGRKFPNKIDYPHELFKEVAEETFGILVYQEQIMQLVQKMAGFSLGEAD 604

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRR + KK K+ +DK +++F+ G  K  +++  +  I++ +  FA+YGFNKSH+ AY+ 
Sbjct: 605  ILRRGISKKEKDYLDKARKQFVDGCKKINVAEETSSKIYDTIELFAEYGFNKSHSCAYSY 664

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQT W+K H+P  F+AA++T+   N +K+     + ++  I+++PP +N     F + 
Sbjct: 665  VSYQTGWLKAHFPEAFMAANLTVAAQNKDKVAAILSECKKMQIEVLPPDINKSEDKFTLE 724

Query: 831  ---GDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886
               G   I +   AI+ VG   A+    +  +K    S ++F + ++  +L +  L  ++
Sbjct: 725  NKNGKMCIRFGFNAIQDVGEQFAKQ--CSRKNKKSLTSFQEFLNELNISQLRKDTLTFMI 782

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             +GA D +G +R+ L + L+N+ +Y +  ++     ++ + +     + D          
Sbjct: 783  NSGAFDNYG-TRLALNKELENLLEYEKAKKRINLVGYKFVLSLPTNNYFDGYEYP----- 836

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                   NE+  + F  SGH LD Y+ + ++       +   +   + + +  ++ + +Q
Sbjct: 837  -LDKLVSNEKEAIHFSLSGHILDGYRNLYQEKTAIADIKIDQSYYDSYVSVLGIIKNIKQ 895

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              T+KGS++ +++  +   E E   FP
Sbjct: 896  ITTKKGSQMAFLSLEDETGELEGVIFP 922


>gi|197116897|ref|YP_002137324.1| DNA polymerase III subunit alpha [Geobacter bemidjiensis Bem]
 gi|197086257|gb|ACH37528.1| DNA polymerase III, alpha subunit [Geobacter bemidjiensis Bem]
          Length = 1029

 Score =  675 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1073 (26%), Positives = 453/1073 (42%), Gaps = 136/1073 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL  HSS S   G  S   +    A+     +AITD N L+    F   A  AGI PI
Sbjct: 2    FIHLHAHSSLSPNWGVHSPETLCSHAASLGFKTLAITDRNGLYGVPRFLDAAREAGISPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            I                 G          VLL    EGY  +  L+S ++          
Sbjct: 62   I-----------------GTEAVTPDNRAVLLACNEEGYANISRLISDLHCQKNF----- 99

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              +  L E    G+I+L+                    K L   K+   + L+V L    
Sbjct: 100  DLIPALSEY-RRGIIVLS-----------------DDRKLLAALKRKSDEGLFVELSPGH 141

Query: 191  GYDRYRESQVVQLAYTHELPLVAT---------------------------------NNS 217
                      + LA    LP VAT                                 N  
Sbjct: 142  SM-----HNALTLARDLRLPPVATSRAVLRAPRYGGQAPPSDALTPTFSQRERGNGPNAL 196

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVE 276
                 +D+  H VL A+  +T +S+        +   L    +M   F   PEAL+NT+ 
Sbjct: 197  AECRLDDFHLHRVLRAIHLNTKLSRLTPEMTAAESDALYPPDKMAEFFPHCPEALQNTIR 256

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            IA  C       + I P F E   +   +     L  +A  G   R        G  +  
Sbjct: 257  IASLCKTDWNFSSTIFPAFRELGTEAAFET----LLERARQGAIWRY-------GSISDR 305

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
             + RLD EL++I    FS YFL+V +  + +++       GRGS A S+ AY L IT +D
Sbjct: 306  VQARLDKELSIIRDKGFSHYFLVVEELTKQSER-----TCGRGSAAASLVAYCLGITHVD 360

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            P+R +L FERFLN  R   PD D+DF  D RD ++ +   +YG  R A +      + ++
Sbjct: 361  PIRHNLFFERFLNEGRSDPPDIDVDFPWDERDAILDFAFARYGARRAAMVANQVGFKGRS 420

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            ALR+V +   +P  ++  + + I        S  A++    F+   L+      ++  ++
Sbjct: 421  ALREVAKVYGLPDYEIKEMTERISGFWRAEQSAAAMSGHPLFKGESLSS-DWQEIMSTAR 479

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            +L G  RH S H  G+VI    + + VP+       LP+ Q+     E AGL+K D LG 
Sbjct: 480  RLNGQLRHLSLHCGGLVIVPDEIRKYVPVEI-SHKGLPLIQWEKDQTEDAGLVKIDILGN 538

Query: 577  KTLTLLQKSLDFLA-QRGVKVDLSLI-PFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            ++L +++ ++  +  Q+GV++D +   P +D  T  LL    T+G F LES  +R  L  
Sbjct: 539  RSLAVIRDAMAAVKEQKGVEIDYATWRPLEDERTQSLLRRGLTIGCFYLESPSVRLLLRK 598

Query: 635  ----------MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
                       + D  E ++   S+ RP     I  Y  R  GK     +HPL++ +L E
Sbjct: 599  IWSSTAPPETFRYDLFEVLVQASSIIRPAANSFIQEYVARLQGK-PWSHLHPLLESVLGE 657

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE-MDKQKERFISGASKNGISK 743
            T G+ IYQEQ+ QIA  L+G+S SE D LR+ + KK +E+ +   + +F++G ++ G+ +
Sbjct: 658  TLGIAIYQEQITQIAMELAGFSASEGDQLRKVITKKHREKRLADFRNKFMAGGAERGVPE 717

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             + + I++ +  FA Y F K H+A+YA++S + A+MK H+P +F+AA ++          
Sbjct: 718  KVLLGIWDQILSFAGYSFCKPHSASYALLSGKAAYMKAHHPAQFIAAVIS-NQGGYYSPF 776

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPF 862
             +  + R+  + I+PP +N     +   +  +   L  I G+    A  ++ E      F
Sbjct: 777  AYISEGRRLGLAILPPDINESEYHYTGKEKTLRVGLMQIDGLTRDGADRLLKERRERGAF 836

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS--RMQLLQSLDNIQKYAQWVEKNRT 920
             S ++F  R       R   E L+ AG  D       R  LL  L + Q+ A  +     
Sbjct: 837  ASFKEFLRRARL---QRADAERLIKAGCFDALEGEEKRPTLLWELLHFQQQATAL----- 888

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                         F  K  L      ++ +    E   LGF  S HPL +YK   ++   
Sbjct: 889  ------------LFEQKTELPHPPPYDAQLVLRQEVEALGFLVSRHPLALYKEQWQRHRP 936

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                E +    G  + +    ++ +  + + G  + +++F +    ++A FFP
Sbjct: 937  IKASELI-KHTGKWVTMVGWWITTKTVEDKHGRPMEFISFEDVTAIFDATFFP 988


>gi|323525477|ref|YP_004227630.1| DNA polymerase III subunit alpha [Burkholderia sp. CCGE1001]
 gi|323382479|gb|ADX54570.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1001]
          Length = 1191

 Score =  675 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/1123 (21%), Positives = 448/1123 (39%), Gaps = 129/1123 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA---- 64
            P++  L   +++S L GA   + ++++       A+AITD  +L   +            
Sbjct: 19   PAYAELHCLTNFSFLRGASHPHELVERAMLHSYSALAITDECSLAGVVRAHTALKEMEAE 78

Query: 65   ---------AGIQPIIGCQLDIDMQDNLKMTNQGKT-----------------------P 92
                       ++   G +     Q+ L    Q +                         
Sbjct: 79   QDRLRKEIEEKLKAAEGSEAGRLPQEALDAALQQEALENWMLKPLPQLIIGSELNLTSAD 138

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                 ++V L +   GY  L EL++      + K S R+  +   +       + +    
Sbjct: 139  GEPFCTLVALATNRNGYGNLSELITLGRSRAE-KGSYRLGPADFTDSLPHLEHLRSLPDC 197

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPL 211
              +       +               G R ++ L+    G D  +   +  ++    LPL
Sbjct: 198  VLMLVPQRTATLSHTLHCAHWLAAFAGTRAWIALELWQTGSDDLQIDALRMISQASGLPL 257

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEA 270
            VA    L  +       D + A+  +T +           + +L+ R  +  ++    + 
Sbjct: 258  VAAGGVLMHTRSRKPLQDTMTAIGLNTPLPACGHALEANAERHLRTRVRLSKLYPR--DT 315

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
            LE T++IA RC F L       P  +    +       + LR   +AG   R   G   K
Sbjct: 316  LEETLKIAARCRFSLDELKYEYPEELVPAGE----SPSSYLRKLVMAGAAERWPNGMDLK 371

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                     +++ EL++IA +K+  YFL V D +++A+  NI +  GRGS A S+  Y L
Sbjct: 372  RI------DQIEKELHLIADLKYEKYFLTVHDIVRFARSKNI-LCQGRGSAANSIVCYCL 424

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             +T+IDP+  ++L ERF++  R   PD D+DF   RR+EVI+Y+  KYG  R A   +  
Sbjct: 425  HVTEIDPVHMNMLIERFISRARNEPPDIDVDFEHQRREEVIQYIYAKYGRHRAALTASLI 484

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            +   ++AL+DVG+AL +  S ++R+ K            +A+A   +             
Sbjct: 485  TYHVRSALKDVGKALGLEASLIERISKSQQWWDGP----EAVAGYLKEAGFDANSHITKN 540

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            L+ ++++L    RH S H  G VI    LS+LVP+      D  V +++   I+   L+K
Sbjct: 541  LIRLTKELRLFPRHLSQHVGGFVIARDKLSRLVPIENATMKDRSVIEWDKDDIDALKLLK 600

Query: 571  FDFLGLKTLTLLQKSLDFLAQR--GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
             D L L  L+ ++++L+F+A R    +  +  IP +D   Y +     T+G+FQ+ES   
Sbjct: 601  VDVLALGMLSAIRRALEFVALRRGFPRFRVQDIPREDRAVYEMCGHADTVGVFQIESRAQ 660

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            +  L  ++P+   D++  V++ RPGPI   +   Y  RK G E I      + P+L+ T 
Sbjct: 661  QSMLPRLKPNKYYDLVIEVAIVRPGPIQGGMVHPYLRRKQGLEPIDYAKDELRPVLERTL 720

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTI 745
            GV I+QEQVM +A + + Y+  +AD LRRAM    +   + K ++      S  G     
Sbjct: 721  GVPIFQEQVMHLAMVAAKYTGEQADQLRRAMAAWRRTGNLAKYQKDLSDRMSARGYEPEF 780

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               I + +  F +YGF +SHAA++A++ Y +AW+K + P  FLA  +  +        + 
Sbjct: 781  IERICQQIEGFGEYGFPESHAASFALLVYLSAWLKRYEPAAFLAGLLNSQPLGFYSPSQL 840

Query: 806  CQDARQFNIQIMPPSVNTPCVD--FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
             QDA++  ++++PP V     +  F+  D      LA+   +     + ++ A       
Sbjct: 841  VQDAKRHGVKVLPPDVTLSDWESTFEKRDREGERVLASETCLHRQ--QAVVSAQQ----- 893

Query: 864  SLEDFCSRV-----------------------------DSKKLNRRVLESLVFAGALDCF 894
             L D   R                               + ++   +++ L  A A    
Sbjct: 894  -LRDLSLRRLSVSRTIRRAARRLSARVFQPPGAYGARGPAVRIGMHLIKGLAQAAAERIV 952

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI------------------------FAHE 930
               R     ++D++ + A    ++                                   +
Sbjct: 953  AARRDAPFSNVDDLARRAALTRRDLEALAAANALASIAGHRREAWWAVTAQHIVPKLLRD 1012

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
                   + L +       +   ++   LG  F+ HPL + +  L +   +   +  A  
Sbjct: 1013 APIAEAPLLLPQADEAREII---DDYASLGLTFNRHPLALLRARLARQRFRTAADLAACQ 1069

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G   R   +V  +Q+  T  G+   +V+  +         +P
Sbjct: 1070 HGTLARACGIVTVRQRPGTANGT--IFVSIEDETGSINVIVWP 1110


>gi|148554041|ref|YP_001261623.1| DNA polymerase III subunit alpha [Sphingomonas wittichii RW1]
 gi|148499231|gb|ABQ67485.1| DNA polymerase III, alpha subunit [Sphingomonas wittichii RW1]
          Length = 1196

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/890 (24%), Positives = 385/890 (43%), Gaps = 53/890 (5%)

Query: 164  SQVAEKRLLTFKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
                 + L   K+   DR+++ L   + G DR R +   +LA    +PL+ATN++L+ + 
Sbjct: 246  DDAVRRALSILKRAAPDRVWLGLSMPYSGRDRRRIATYARLAKEVGVPLLATNDALYATP 305

Query: 223  EDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
                 HDV+  +     + +   R     + +LK   EM  +F D P+A+   V +  R 
Sbjct: 306  GQRPLHDVVTCIRLGLTLDEAGTRLAANGERHLKPGHEMARLFVDHPQAVAAGVALLDRI 365

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
             F L+      P     E        +  L +    G+  R       K          +
Sbjct: 366  DFDLKQLKYEYPHEPVPEG----WTPQGWLEHLVEKGIAWRYGPNPEQK------VLDLV 415

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + EL ++   +++ YFL V D + +A+   I +  GRGS A SV  Y L IT++DP+   
Sbjct: 416  ETELKLVRDARYAYYFLTVHDVVAFARGEKI-LCQGRGSAANSVICYVLGITEVDPVHNK 474

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLF RF++ DR   PD D+DF  +RR+EV+++V  +YG  R     T    + ++A+R++
Sbjct: 475  LLFSRFISEDRNEPPDIDVDFEHERREEVMQHVYARYGRHRAGIAATVIHYRPRSAVREI 534

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             + L +      +L   I    A  +  +   +          +  + RL  + ++L   
Sbjct: 535  AKVLGLSEDVAAKLTSTIWGSYAATMEGKRFHETG----FDPGNVEIARLNMLVEQLLTF 590

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             RH S H  G V+ +  L + VP++     D    +++   I+  GL+K D L L  LT 
Sbjct: 591  PRHLSQHVGGFVLTEDRLDETVPIHNAAMDDRTFIEWDKDDIDALGLMKVDVLALGMLTC 650

Query: 582  LQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++K+   + A  G +  L+ IP +  E Y +L    ++G+FQ+ES      L  ++P  +
Sbjct: 651  IRKAFALIQAHTGTEYTLATIPKERKEVYDMLCKGDSIGVFQVESRAQINMLPRLRPRTL 710

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEK------IVSIH-------PLIDPMLKETQG 687
             D++  V++ RPGPI   +V+   K  KE+      I           P ++ +L +T G
Sbjct: 711  YDLVVQVAIVRPGPIQGGMVHPYLKRRKEEREGRLVIDYPGPKGPDGAPELEDVLSKTLG 770

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIA 746
            V ++QEQ M++A + + ++  EA+ LRRAM   +    M + + + + G    G  +  A
Sbjct: 771  VPLFQEQAMKLAIVAAKFTDGEANQLRRAMATFRHVGTMPEFEGKMVEGMVARGYPRDFA 830

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
               F  +  F  YGF +SHA ++A++ Y ++++K  YP  F  A +  +        +  
Sbjct: 831  ERCFAQIKGFGSYGFPESHAQSFALLVYASSYIKCRYPAVFACALLNSQPMGFYAPAQIV 890

Query: 807  QDARQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            +DAR+  +++    VN    D  +    G   +   L  ++G     A  I +      F
Sbjct: 891  RDAREHGVEVRAADVNRSGWDNSLEGPPGRLALRIGLRQVEGFRQAWADEIAKVRGQGAF 950

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             S+E+   R    KL RR L  L  A A    G  R   L           W  +   + 
Sbjct: 951  ASIEELARRA---KLPRRALRLLADADAFRSLGLDRRAAL-----------WEARRTPDG 996

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
               +FA  K     +           S     + ++      GHP+   + + R+ G+  
Sbjct: 997  ELPLFAAAKARELGEEPDAMLPAMPLSEHVAADYQMTRLSLKGHPMQFLRDVFRREGVLS 1056

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              E      G   ++A +V+ +Q+    +G  I ++T  +         +
Sbjct: 1057 CAEVAQAKNGRRAKVAGVVLVRQRPG--EGKAI-FITLEDETGITNVLLW 1103



 Score = 46.5 bits (109), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 3/117 (2%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            ++  F  +   ++YS L GA +  +++    A     I I D N++   +        A
Sbjct: 3   AEAVPFAEMVAATNYSFLRGASAAADMVAAARAAGHAGIGIADRNSVAGVVRAWDAVRKA 62

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
             +       D+  +     T          P IV   +T  G+ RL  L++     
Sbjct: 63  REEARKAGHADLAFK---LATGARLVFVDGTPDIVAYPATRRGWGRLTRLLTTGNRR 116


>gi|256825424|ref|YP_003149384.1| DNA polymerase III subunit alpha [Kytococcus sedentarius DSM 20547]
 gi|256688817|gb|ACV06619.1| DNA polymerase III, alpha subunit [Kytococcus sedentarius DSM 20547]
          Length = 1260

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/1133 (25%), Positives = 487/1133 (42%), Gaps = 132/1133 (11%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  F HL V SS+SL  G      ++D+ AA  Q  +A+TD + L+ A+ F++    AGI
Sbjct: 9    SADFAHLHVASSFSLQYGTSRPQELVDRAAAWGQSHLALTDRDGLYGAVRFTRACVEAGI 68

Query: 68   QPIIGCQLDIDM------------QDNLKMTNQGKTPFPTVPSIVLLVS-------TAEG 108
             P++G  L +                  +    G     +   + +L +          G
Sbjct: 69   VPVVGVDLAVAHDAPAGPPAARRAGRRQQPVRGGSWVDESHCRVRVLAAGRAAGHGNGVG 128

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
            +  L  LVS  +   + +   R   + +        ++L  G    + +A        A 
Sbjct: 129  WAALCRLVSHTHAAGE-RGEPRTTRALVAGAAPAVRVLL--GPDSDVGQAVLQRRRSEAR 185

Query: 169  KRLLTFKKLFGDRL----------YVNLQRHRGY-------DRYRESQVVQLAYTHELPL 211
            + L  + +   +++           V L             ++    ++ QLA    +  
Sbjct: 186  RLLHGWVEAVAEQVGGTAAARRVVVVELVCSGAPAGSPGCTEQAV--RMWQLAQEVGVRA 243

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
            V T        E     DVL A     ++  +   + T   +L + + MV +   L E  
Sbjct: 244  VLTAAVRHADPEGVVVADVLDAARQHVLLDPRHLDQRTSAAHLASTASMVRVAHWLAERA 303

Query: 270  ---------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA--G 318
                      L  T  +A  C    +    I    + +       +  + LR       G
Sbjct: 304  GQPPRVADQLLAATSGVAAECGLSARDDLGIGSVHLPEPEVLGFTDTADALRGLTARCRG 363

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
                + +GA  +    +         L  I ++ +  YFL VA      ++    V   R
Sbjct: 364  AVDEMYRGAALRRRARERMEAE----LATIEQLGYPTYFLTVARVCDLIREVGGRVA-AR 418

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GSGAGS+  + L I+ +DPLR  LL ERF +P R  +PD DID    RR E+   +  ++
Sbjct: 419  GSGAGSLVNHLLGISRVDPLRHDLLMERFCSPLRAELPDIDIDVESARRPEIYERILERF 478

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G  RV  +    + + + A+RDVG  L MP  +VD + K  P+  A              
Sbjct: 479  GAGRVTCVSMMETYRVRHAVRDVGAVLGMPPVEVDAIAKAFPHVRARDARAAIRDL-PEL 537

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
            R A L  P + R+ ++ ++L+GL RH + H  G+V+ +  L    P+  +     P++QF
Sbjct: 538  RAAGLDAPRLQRMFDLVERLDGLPRHIALHPCGVVLSNLGLRDRTPVE-ESWIGFPMSQF 596

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----RGVKVDLSLIPFDDHETYHLLTT 614
            +   +E  GL+K D LG++  + +  ++D +      R    D   +P DD ET+ L+ +
Sbjct: 597  DKDDVEDMGLLKLDVLGIRMQSAMAHTVDLVESTHGVRLDLDDEEQVPHDDAETFGLIGS 656

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIV 672
              TLG FQ+ES G R+ +    P   EDII  +SL+RPGP   D I  + + + G  + +
Sbjct: 657  TRTLGCFQIESPGQRELVGKFGPQTFEDIIIDISLFRPGPVKSDMITPFLSARQGWAEPL 716

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++  L+ T+GV+++ EQV+QI    +G SL+ +D  RRAMG    +  D  +  +
Sbjct: 717  LMHPALEEHLRSTEGVVVFHEQVLQIITATTGVSLAHSDEARRAMG--SPDGRDAVERWW 774

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
               A+  G +  +A  I+E+LA FA +GF K+HAAA+A+ +YQ+AW+KTHYP  F+A  +
Sbjct: 775  RPAAAARGFTGEVADRIWEVLAAFASFGFCKAHAAAFALPTYQSAWLKTHYPAHFMAGVL 834

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--------------------- 831
            T +     K +    DAR+  ++I+   VN     ++V                      
Sbjct: 835  THDPGMYPK-RLIMDDARELGVEILGLDVNASGEGYRVERVADSSGPGEWPASAGPGAPD 893

Query: 832  -------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                            +  +L  +KG+G   AR I+E    +P+ SL DF  R    +++
Sbjct: 894  PDLALDRVRQRARQWGVRIALTEVKGLGEDDARRIVE---GQPYSSLADFWQRA---QVD 947

Query: 879  RRVLESLVFAGALDCFGY--SRMQLLQSLDNIQKY----------------AQWVEKNRT 920
            R ++E +V AGA D F     R  LL  L +++++                A+   + R 
Sbjct: 948  RPLVERMVLAGAFDAFASPARRRDLLVELMDLERWRDPRPRGKRARLAGERAEQDRRRRA 1007

Query: 921  N-KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                + +         D   L   ++E    +  +E  VLG   + H L+ + P LR++G
Sbjct: 1008 GHGTQQVLELGVPRAVDATGLPPMALE---EQVAHELDVLGMDVTAHVLEPHLPTLRELG 1064

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +    +      G  + +A + V+ Q    R G R+ +VT ++P    +A FF
Sbjct: 1065 VTPARDVRTMRSGAEVLVAGVRVATQTPPVRSGRRVVFVTLNDPTGASDATFF 1117


>gi|110801675|ref|YP_697669.1| DNA polymerase III, alpha subunit, interruption-C [Clostridium
            perfringens SM101]
 gi|110682176|gb|ABG85546.1| DNA polymerase III, alpha subunit, interruption-C [Clostridium
            perfringens SM101]
          Length = 783

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/664 (36%), Positives = 375/664 (56%), Gaps = 40/664 (6%)

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPD D DFC + R  VI YV  KYGH+ V+QIITFG++ A+A +RDVGRA+ 
Sbjct: 2    FLNPERVSMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMN 61

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
              Y++VDR+ K IP      +  +A+  +   +     +  V  L+++S++LEGL RH+S
Sbjct: 62   YTYAEVDRIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVKELIDVSRRLEGLPRHSS 120

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            THAAG+VI  +PL + VP+ +    +  VTQF+M  +E+ GL+K DFLGL+TLT+++ ++
Sbjct: 121  THAAGVVIASQPLVEYVPLQK--NDESIVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAV 178

Query: 587  DFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            D +   RGV +DL  + FDD E Y ++    T+G+FQLES+GM   ++ ++PDC+EDIIA
Sbjct: 179  DMIKYNRGVDIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIA 238

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
             +SLYRPGP+  I  Y + K   + +  I P ++ +L  T GV++YQEQVM+I + L+GY
Sbjct: 239  GISLYRPGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGY 298

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELL 753
            S+  +D++RRAM KK  + M+++++ FI             G  +NGIS   A  IF+ +
Sbjct: 299  SMGRSDLVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSM 358

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNKSHAAAYAVI +QTA++  +YPVEFLAA +   M N +K+ ++ + A +  
Sbjct: 359  MDFASYAFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLG 418

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
            IQ++PP +N     F V  + I + + AIK VG     +I ++      F SL DFC+++
Sbjct: 419  IQVLPPDINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGKFTSLMDFCNKI 478

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--E 930
            D   +N+R +ESL+ AG  D     R QLL   + I        K   +   ++F    E
Sbjct: 479  DLSIVNKRSVESLIKAGTFDSLNVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFGALQE 538

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-- 988
            +   + +I        N       E+ + G Y SGHPLD Y+  L++      E+ +   
Sbjct: 539  ESESNLEIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTSITIEKIIEAQ 598

Query: 989  -------------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                                  G  + +  ++ +  +K TR  + + +    +     E 
Sbjct: 599  KNLNEQKNVELEDLVLDSSLTDGTRVIIGGILTNVSRKVTRNNTLMAFAKVEDLTGYLEC 658

Query: 1030 NFFP 1033
              FP
Sbjct: 659  VIFP 662


>gi|322421354|ref|YP_004200577.1| DNA polymerase III subunit alpha [Geobacter sp. M18]
 gi|320127741|gb|ADW15301.1| DNA polymerase III, alpha subunit [Geobacter sp. M18]
          Length = 1032

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/1076 (26%), Positives = 447/1076 (41%), Gaps = 139/1076 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHSS S   G  S   +  + A      +AITD N L+    F   A  AGI PI
Sbjct: 2    FVHLHVHSSLSPNWGVHSPEALCSEAARLGFDTLAITDRNGLYGVPRFLDAAREAGISPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            I                 G          VLL    EGY  +  L+S ++          
Sbjct: 62   I-----------------GTEAVTEQNRAVLLAVDREGYANISRLLSDLHCSKNF----- 99

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              L         G+I+L+                    + L   K+     L+V L    
Sbjct: 100  -DLIQALAQYRRGVIVLS-----------------DDRRLLSVLKRESDQGLFVELSP-- 139

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSE---------------------------- 222
            G+D     + + L+    +P VAT  +L L                              
Sbjct: 140  GHD---MHRALALSRDLRIPPVATARALMLDRSALTPPLSRRERGDVDTPRQEREYVDAH 196

Query: 223  --------EDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALEN 273
                    +D+  H VL A+  +T +S+            L     M   F   PEALEN
Sbjct: 197  LRRDKDVLDDFHLHRVLRAIHLNTKLSRLAPELTACESDLLYPPLRMSDFFPHCPEALEN 256

Query: 274  TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
            T  IA  C       + I P F     DD        L  +A AG   R        G  
Sbjct: 257  TRRIAGMCRGEWDFSSTIFPAFRGLGNDDAFAT----LSARARAGALWRY-------GSI 305

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
                  RL+ EL +I    F+ YFL+V +  + +++       GRGS A S+ AY L IT
Sbjct: 306  DAKVEARLEKELTIIRDKGFAHYFLVVEEITKQSQR-----TCGRGSAAASLVAYCLGIT 360

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
             +DP+R +L FERFLN  R   PD D+DF  D RD ++ +   +YG  R A +      +
Sbjct: 361  HVDPIRHNLFFERFLNEGRSDPPDIDVDFPWDERDAILDFAFARYGARRAAMVANQVGFK 420

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             ++ALR+V +   +P  ++  +   I        S  A+A    FR   L+      +L 
Sbjct: 421  GRSALREVAKVYGLPDFEIKEMTDRISGFWHAEQSAAAMAGHPLFRGEALSR-DWQEILA 479

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             +++L G  RH S H  G+VI    + + VP+       LP+ Q+     E AGL+K D 
Sbjct: 480  TARRLNGQLRHLSLHCGGLVIVPDEIRRYVPVEI-SHKGLPLIQWEKDQTEDAGLVKIDI 538

Query: 574  LGLKTLTLLQKSLDFLAQR--GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            LG ++L +++ +L  + ++        S  P +D  T  L+    T+G F LES  +R  
Sbjct: 539  LGNRSLAVIRDALAAVKEQKGMEIDYASWRPLEDERTQSLMRRGLTIGCFYLESPSVRLL 598

Query: 632  LEG----------MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            L               D  E ++   S+ RP     I  Y  R  GK K   +HPL++ +
Sbjct: 599  LRKIWSSTAPPETFDSDLFEVLVQASSIIRPAANSFIQEYVARMQGK-KWSHLHPLLESV 657

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE-MDKQKERFISGASKNG 740
            L ET G+ IYQEQ+ QIA  L+G+S SE D LR+ + KK +E+ +     +FI+G  + G
Sbjct: 658  LGETLGIAIYQEQITQIAMELAGFSASEGDQLRKVITKKHREKRLADFHAKFIAGGKERG 717

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            +   +  +I+E +  FA Y F K H+A+YA++S + A+MK ++P +F+AA ++       
Sbjct: 718  VPGEVLDSIWEQILSFAGYSFCKPHSASYALLSAKAAYMKANHPAQFMAAVIS-NQGGYY 776

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD- 859
                +  + R+  + I+PP +N     +K  +  +   L  I G+    A+ +++   + 
Sbjct: 777  SPFAYISEGRRLGLTILPPDINESDYHYKGFEKSLRVGLMQIDGLTREGAKRLLKERKER 836

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY--SRMQLLQSLDNIQKYAQWVEK 917
             PF S +DF  R     + R   E LV AG  D       R  LL  L + Q+ A  +  
Sbjct: 837  GPFGSFQDFLRRA---GVQRADAERLVKAGCFDPLEGEQRRPALLWELLHFQQQATAL-- 891

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                            F  +  L +    ++      E   LGF  S HPL +YK   ++
Sbjct: 892  ---------------LFEQQTELPQAPPYDAETVLRQEVETLGFLVSRHPLALYKAQWQR 936

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   E +    G  + +    ++ +  + + G  + +++F +    ++A FFP
Sbjct: 937  HRPIKAAELIR-HSGKWVTMVGWWITTKTVEDKHGRPMEFISFEDVTAIFDATFFP 991


>gi|170764215|ref|ZP_02638356.2| DNA polymerase III, alpha subunit [Clostridium perfringens CPE str.
            F4969]
 gi|170715700|gb|EDT27882.1| DNA polymerase III, alpha subunit [Clostridium perfringens CPE str.
            F4969]
          Length = 783

 Score =  670 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/664 (36%), Positives = 375/664 (56%), Gaps = 40/664 (6%)

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPD D DFC + R  VI YV  KYGH+ V+QIITFG++ A+A +RDVGRA+ 
Sbjct: 2    FLNPERVSMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMN 61

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
              Y++VDR+ K IP      +  +A+  +   +     +  V  L+++S++LEGL RH+S
Sbjct: 62   YTYAEVDRIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVKELIDVSRRLEGLPRHSS 120

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            THAAG+VI  +PL + VP+ +    +  VTQF+M  +E+ GL+K DFLGL+TLT+++ ++
Sbjct: 121  THAAGVVIASQPLVEYVPLQK--NDESIVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAV 178

Query: 587  DFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            D +   RGV +DL  + FDD E Y ++    T+G+FQLES+GM   ++ ++PDC+EDIIA
Sbjct: 179  DMIKYNRGVDIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIA 238

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
             +SLYRPGP+  I  Y + K   + +  I P ++ +L  T GV++YQEQVM+I + L+GY
Sbjct: 239  GISLYRPGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGY 298

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELL 753
            S+  +D++RRAM KK  + M+++++ FI             G  +NGIS   A  IF+ +
Sbjct: 299  SMGRSDLVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSM 358

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNKSHAAAYAVI +QTA++  +YPVEFLAA +   M N +K+ ++ + A +  
Sbjct: 359  MDFASYAFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLG 418

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
            IQ++PP +N     F V  + I + + AIK VG     +I ++      F SL DFC+++
Sbjct: 419  IQVLPPDINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGRFTSLMDFCNKI 478

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--E 930
            D   +N+R +ESL+ AG  D     R QLL   + I        K   +   ++F    E
Sbjct: 479  DLSIVNKRSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFGALQE 538

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-- 988
            +   + +I        N       E+ + G Y SGHPLD Y+  L++      E+ +   
Sbjct: 539  ESESNLEIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTSITIEKIIEAQ 598

Query: 989  -------------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                                  G  + +  ++ +  +K TR  + + +    +     E 
Sbjct: 599  KNLNEQKNVELEDLVLDSSLTDGTRVIIGGILTNVSRKVTRNNTLMAFAKVEDLTGYLEC 658

Query: 1030 NFFP 1033
              FP
Sbjct: 659  VIFP 662


>gi|170763890|ref|ZP_02634742.2| DNA polymerase III subunit alpha [Clostridium perfringens B str. ATCC
            3626]
 gi|182420478|ref|ZP_02642185.2| DNA polymerase III, alpha subunit [Clostridium perfringens NCTC 8239]
 gi|170712862|gb|EDT25044.1| DNA polymerase III subunit alpha [Clostridium perfringens B str. ATCC
            3626]
 gi|182381484|gb|EDT78963.1| DNA polymerase III, alpha subunit [Clostridium perfringens NCTC 8239]
          Length = 783

 Score =  670 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/664 (36%), Positives = 376/664 (56%), Gaps = 40/664 (6%)

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPD D DFC + R  VI YV  KYGH+ V+QIITFG++ A+A +RDVGRA+ 
Sbjct: 2    FLNPERVSMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMN 61

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
              Y++VDR+ K IP      +  +A+  +   +     +  V  L+++S++LEGL RH+S
Sbjct: 62   YTYAEVDRIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVKELIDVSRRLEGLPRHSS 120

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            THAAG+VI  +PL + VP+ +    +  VTQF+M  +E+ GL+K DFLGL+TLT+++ ++
Sbjct: 121  THAAGVVIASQPLVEYVPLQK--NDESIVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAV 178

Query: 587  DFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            D +   RGV++DL  + FDD E Y ++    T+G+FQLES+GM   ++ ++PDC+EDIIA
Sbjct: 179  DMIKYNRGVEIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIA 238

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
             +SLYRPGP+  I  Y + K   + +  I P ++ +L  T GV++YQEQVM+I + L+GY
Sbjct: 239  GISLYRPGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGY 298

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELL 753
            S+  +D++RRAM KK  + M+++++ FI             G  +NGIS   A  IF+ +
Sbjct: 299  SMGRSDLVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSM 358

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNKSHAAAYAVI +QTA++  +YPVEFLAA +   M N +K+ ++ + A +  
Sbjct: 359  MDFASYAFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLG 418

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
            IQ++PP +N     F V  + I + + AIK VG     +I ++      F SL DFC+++
Sbjct: 419  IQVLPPDINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGRFTSLMDFCNKI 478

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--E 930
            D   +N+R +ESL+ AG  D     R QLL   + I        K   +   ++F    E
Sbjct: 479  DLSIVNKRSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFGALQE 538

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-- 988
            +   + +I        N       E+ + G Y SGHPLD Y+  L++      E+ +   
Sbjct: 539  ESESNLEIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTSITIEKIIEAQ 598

Query: 989  -------------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                                  G  + +  ++ +  +K TR  + + +    +     E 
Sbjct: 599  KNLNEQKNVELEDLVLDSSLTDGTRVIIGGILTNVSRKVTRNNTLMAFAKVEDLTGYLEC 658

Query: 1030 NFFP 1033
              FP
Sbjct: 659  VIFP 662


>gi|148272699|ref|YP_001222260.1| DNA polymerase IIIsubunit alpha [Clavibacter michiganensis subsp.
            michiganensis NCPPB 382]
 gi|147830629|emb|CAN01565.1| DNA polymerase III, alpha chain [Clavibacter michiganensis subsp.
            michiganensis NCPPB 382]
          Length = 1140

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/1101 (27%), Positives = 490/1101 (44%), Gaps = 109/1101 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL V S++S   G  +   ++D++A++  PA AITD + L+ A+   +++ AAG+ P
Sbjct: 2    SFTHLHVASAFSAHFGTSAPEALVDRVASEGAPAAAITDRDGLYGAVRHIRRSLAAGVSP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK--- 126
            ++G +L +  +   ++T            +    +  +G+  L  L+S  +     +   
Sbjct: 62   VVGAELGLTGEHPGRIT-----------VLAHGGTRGQGWAALSRLISASHGRGTARSTA 110

Query: 127  -------QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
                      R     L E G  G +ML  G    + RA       +A + L  + +L  
Sbjct: 111  RSAQAGIARTRPPAFLLGEDGPVGTVML--GPDSDVGRAVAAGDHALASRHLAEWARLLP 168

Query: 180  DRLYVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
              + V +  H             +++++LA  H +P V TN   +L  +D    DVL A 
Sbjct: 169  GAVVVEVVCHFTEPGESASLRHAARMLELADAHRVPAVLTNAVRYLEPDDALTGDVLDAA 228

Query: 235  AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARRCSF 283
                 +    RP+     +LK  +EM  I  ++  A           L  T E+A RC  
Sbjct: 229  GTLRPLGSF-RPQPNGQAWLKTPTEMQGIAREIAGASSLDRRAGEALLRATEELADRCRL 287

Query: 284  ILQ-VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                  A   P+  EK    +  + +  L  KA AG+  R      A     Q    R+ 
Sbjct: 288  DPDADLAWRKPKLPEKSVIGVTGDPDEALWRKAEAGVTERFGHVDEA---MRQRVLARMR 344

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             EL  I    F+ YFL VAD     +   +     RGSGAGS+  Y L I+++DPL   L
Sbjct: 345  TELTTITGFGFATYFLTVADVCALMRDMGVR-NQARGSGAGSLVNYLLRISNVDPLEHDL 403

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFL   R ++PD DID    RR EV   V  KYG  RV  +    + +A+ A RD G
Sbjct: 404  LFERFLGKVRSTLPDIDIDVESARRHEVYHRVFEKYGSNRVTLLSMQNTYRARGAARDAG 463

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVS--LQAIADDSRFREARLADPSVDRLLEISQKLEG 520
             AL +   Q+D + K I    A      L+   +     +    DPS+D L++++++L+ 
Sbjct: 464  LALDLDEQQIDFIAKNIWRFNAREFRAVLETKPELKPIADLVRDDPSIDLLVDLTERLDR 523

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L RH S H  G+++GD  L    P+       LP++QF+   I+  GL+K D LG++  +
Sbjct: 524  LPRHISMHPCGVILGDSDLLSTSPVQPSGM-GLPMSQFDKDDIDDMGLLKLDILGVRMQS 582

Query: 581  LLQKSLDFLA--------------------QRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
             +  +LD +                      R  +++L  IP DD ET+  + T  TLG+
Sbjct: 583  TMAYALDEIHRIHGARSAVAGGIPVDARYVHRDGRIELDEIPHDDEETFAAIRTTHTLGM 642

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI 678
            FQ+ES G R+ +  MQPD  ED+IA VSL+RPGP+  + +  + + K+G      +HP  
Sbjct: 643  FQIESPGQRELIGKMQPDVYEDLIADVSLFRPGPMKGNMVAPFLDTKHGITLPDYLHPRF 702

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG--- 735
             P L  T GV+IY EQV++I       SL+EAD LRR M +         +ER       
Sbjct: 703  APFLAPTFGVVIYHEQVIRIFADCMQVSLAEADELRRNMERMDTVVEQAFRERTAMHVDG 762

Query: 736  -ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               +   S      I++ L  F  +GF K+H AA+A+ ++Q+AW+KTHYP EFLA  +T 
Sbjct: 763  RTGRRPFSDADVERIWKALKGFGSFGFCKAHGAAFALPTWQSAWLKTHYPAEFLAGILTH 822

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPC--------------VDFKVGDNRIYYSLA 840
            +     K +    +AR+  + ++P  VN                    ++G+  I  SL 
Sbjct: 823  DPGMYPK-RLLLTEARRMGVPVLPLDVNRSRGVYRVERVDGGETTGRTRIGELGIRLSLQ 881

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS--- 897
             + G+       I      +P+DS+ DF ++    + +R +LE L   GALD    +   
Sbjct: 882  DVHGMSEAELERI---ERGQPYDSISDFYAKA---QPSRALLERLAAVGALDPLATNEDD 935

Query: 898  RMQL-LQSLDNIQKYAQWV-----EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            R      S  ++  Y + +               +F  ++               +   R
Sbjct: 936  RAARGAASRGDVMAYVRRLTARAARPADPAGQLPLFVDDRDLIP-----RGSPDPDGRAR 990

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               E  +L    + H L+ Y+P+L ++G+    + +    G+ + +A + ++ Q    R 
Sbjct: 991  VAAELDILQMEVTEHVLESYRPMLDELGVIPASQLLEVRSGSEVVVAGIRIATQTPPMRS 1050

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G R+ +++  +     ++ FF
Sbjct: 1051 GKRVVFISLDDGTGCSDSTFF 1071


>gi|313903425|ref|ZP_07836816.1| DNA polymerase III catalytic subunit, DnaE type [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466246|gb|EFR61769.1| DNA polymerase III catalytic subunit, DnaE type [Thermaerobacter
           subterraneus DSM 13965]
          Length = 1218

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/593 (39%), Positives = 346/593 (58%), Gaps = 20/593 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FVHL VHS YSLL+GA  +  +  + A    PA+A+TD   ++ A++F +     GI+P
Sbjct: 3   PFVHLHVHSEYSLLDGAARVGELAARAAELGMPALALTDHGVMYGAIDFYKACKKHGIKP 62

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIGC+L +  +       +          ++ L     GY+ LI +VSR Y  +      
Sbjct: 63  IIGCELYLARRTRHDREPK---LDDQPYHLLALAQNETGYRNLIRIVSRAY-AEGFYYKP 118

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           R     L +  +EGLI+ +G     I R       + A + +  + ++FGDR Y  +Q H
Sbjct: 119 RADRELLAQY-SEGLIVTSGCIGSEIPRLLLEGREEEALQAVRWYLEVFGDRFYFEIQDH 177

Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              +  R  +++++LA   ++P+VATN+  +L+++D  AH+VL+ +     +   +R R 
Sbjct: 178 GLPEERRAYARILELARRFDVPVVATNDVHYLNKDDAAAHEVLLCIQTGKTLDDPNRMRF 237

Query: 249 T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             P+ YLK   EM ++F D+PEAL NTV++A RC    +    +LP +   E  D     
Sbjct: 238 EGPEFYLKTPEEMAALFRDVPEALANTVKLAERCQLEFEFGRFLLPHYEVPEGHDA---- 293

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + LR    + L  R             + R RL+ EL VI RM +  YFLIV DF+ +A
Sbjct: 294 ASYLRYLCESKLPERYPNAGS-------EVRDRLNHELEVITRMGYPAYFLIVWDFVDYA 346

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           ++N I VGPGRGS AGS+ AY L ITDIDPLR++LLFERFLNP+R++MPD DIDF   RR
Sbjct: 347 RRNGIAVGPGRGSAAGSLVAYVLGITDIDPLRYNLLFERFLNPERVTMPDIDIDFDDHRR 406

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           DEVI YV  KYG +RVAQIITFG + A+A +RDVGR + +PY +VD++ K++P      +
Sbjct: 407 DEVIEYVVRKYGRDRVAQIITFGRMLARAVIRDVGRVMGLPYGEVDKIAKMVPAQLGITL 466

Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             QA+      ++A    P V +L+++++KLEG+ RHAS HAAG+VIG  PL + VP+ R
Sbjct: 467 D-QALESSPELKQAYDQQPVVRQLVDMARKLEGMPRHASVHAAGVVIGRDPLMEHVPLQR 525

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            ++    VTQF M  +E+ GL+K DFLGL+TL ++Q++   + Q G +  L+ 
Sbjct: 526 -MQDGSTVTQFPMTTLEELGLLKMDFLGLRTLHVIQETEQIIHQTGARDVLAE 577



 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 169/464 (36%), Positives = 254/464 (54%), Gaps = 30/464 (6%)

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD  T+  ++   T  +FQ+ESSG  Q L  ++P  IED+IA V+L+RPGP+ + +
Sbjct: 633  DIPLDDAATFEAMSRGETAAMFQVESSGFTQMLRSLKPSSIEDLIAAVALFRPGPLGSGM 692

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            V  +  RK+G+  +   HP ++P+LKET G I+YQEQVMQIA +++G++L EAD+LRRAM
Sbjct: 693  VDDFIKRKHGQVPVEYPHPWLEPILKETYGTIVYQEQVMQIASVMAGFTLGEADLLRRAM 752

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM KQ+E+F++GA+  GI   +A  IF+L+  FA YGFNKSH+AAY  ++Y TA
Sbjct: 753  GKKKPEEMQKQREKFLAGAAAKGIDAELAGRIFDLMEYFAGYGFNKSHSAAYGYLAYVTA 812

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------- 830
            ++KTHYP  ++AA+++  M N +++ ++  + R+  I ++PP VN     F V       
Sbjct: 813  YLKTHYPAPYMAATLSSVMSNSDRVAEYIAECRRLGIPVLPPDVNQSEARFTVVPDPGAP 872

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            G   I + LAA+K VG      I+ A  +  PF SL+DFC RVD +++NRR LESL+ AG
Sbjct: 873  GGQAIRFGLAAVKNVGFGAIESIVAARQEGGPFRSLDDFCRRVDLRQVNRRALESLIKAG 932

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-------------- 935
            A D  G  R +L+  L+ +   AQ   K R     ++                       
Sbjct: 933  AFDSLGEPRARLVAGLEEVMNRAQRWHKERETGQVSLLDLTAALVGAGGRGSGGGGTGAG 992

Query: 936  ------DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
                  +   L        + +   E+ VLG Y SGHPL  Y+  L +       +    
Sbjct: 993  AAAADLEVTELPPVDEWPPNRKLAMEKEVLGLYLSGHPLAHYQRELARRVTATTRQLADR 1052

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              G  +++  +V   ++  TR G  + +V   +     E   FP
Sbjct: 1053 EDGARVQVGGLVQGVRRITTRGGDFMAFVQLEDLEGTVEVVVFP 1096


>gi|149010467|ref|ZP_01831838.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP19-BS75]
 gi|147764948|gb|EDK71877.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP19-BS75]
          Length = 957

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/936 (30%), Positives = 456/936 (48%), Gaps = 90/936 (9%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +  L  ++ GYQ+L++L +      QG+++  +   +L++I    +I+            
Sbjct: 1    MRFLALSSVGYQQLMKLSTA---KMQGEKTWSVLSQYLEDIA---VIV------------ 42

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSL 218
                               F     + L    G D Y       LA     P++      
Sbjct: 43   -----------------PYFDRVESLEL----GCDYYIGVYPETLASEFHHPILPLYRVN 81

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEI 277
                 D E   VL A+  +  + +   P  +      + S +  +F +  P+AL+N  ++
Sbjct: 82   AFESRDREVLQVLTAIKENLPLREV--PLRSRQDVFISASSLEKLFQESFPQALDNLEKL 139

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
                S+ L      LPRF                   AV  L  R   G + KG  +++Y
Sbjct: 140  ISGISYDLDTSL-KLPRFNP--------------ARPAVEELRERAELGLVQKGLTSKEY 184

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            + RLD EL+VI  M F  YFL+V D +++ + N   +G GRGS  GS+ +YAL IT IDP
Sbjct: 185  QDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNGYYMGMGRGSAVGSLVSYALDITGIDP 244

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
            +  +L+FERFLN +R +MPD DID     R + IRYV NKYG +  AQI+TF +  AK A
Sbjct: 245  VEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFIRYVGNKYGSKHAAQIVTFSTFGAKQA 304

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
            LRDV +   +P  ++  + K I           A   + +FR+   +     +  EI+ K
Sbjct: 305  LRDVLKRFGVPEYELSAITKKISFRDNLK---SAYEGNLQFRQQINSKLEYQKAFEIACK 361

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EG  R  S HAAG+VI D+ L+  +P+      ++P+TQ++   +E +GL+K DFLGL+
Sbjct: 362  IEGYPRQTSVHAAGVVISDQDLTNYIPL--KYGDEIPLTQYDAHGVEASGLLKMDFLGLR 419

Query: 578  TLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT +QK  + LA+   + + +  I  +D ET  L  +  T GIFQ E  G  + L+ +Q
Sbjct: 420  NLTFVQKMQELLAETEGIHLKIEEIDLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQ 479

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            P C ED++A  SL RPG  D I  +  RK+G+E++  +   ++ +L  T G+++YQEQVM
Sbjct: 480  PVCFEDVVATTSLNRPGASDYINNFVARKHGQEEVTVLDSALEDILAPTYGIMLYQEQVM 539

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            Q+AQ  +G+SL +AD+LRRAMGKK    M + +  FI G+ + G +   A  +F+++ KF
Sbjct: 540  QVAQRFAGFSLGKADILRRAMGKKDASAMHEMRASFIQGSIEAGHTAEKAEQVFDVMEKF 599

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A YGFN+SHA AY+ +++Q A+ KTHYP  F    +     +      +  DA +   ++
Sbjct: 600  AGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQIMLNSANSD------YLIDALEAGFEV 653

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
             P S+NT     K+ +  IY  L +IKGV    A  I+E   ++P+ ++EDF +++    
Sbjct: 654  APLSINTIPYHDKIANKAIYLGLKSIKGVSNDLALWIIE---NRPYSNIEDFIAKLPENY 710

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            L   +LE LV  G  D F  +R ++  +L N+ ++ +        +  ++F     ++ +
Sbjct: 711  LKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFEFVK--------ELGSLFGDAIYSWQE 762

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
                          +F  EQ +LG   S HPL      +    I            +   
Sbjct: 763  S------EDWTEQEKFYMEQELLGIGVSKHPLQ----AIASKAIYPITPIGNLSENSYAI 812

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   V   +  +T+KG  + ++   +  K+ +   F
Sbjct: 813  ILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVTLF 848


>gi|167471052|ref|ZP_02335756.1| DNA polymerase III, alpha subunit [Yersinia pestis FV-1]
          Length = 743

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/601 (40%), Positives = 354/601 (58%), Gaps = 17/601 (2%)

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            TFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A A + +  E   AD  
Sbjct: 15   TFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPGMTLE-KAFAAEPQLAEIYEADEE 73

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D   + PVTQF+   +E AG
Sbjct: 74   VRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVTQFDKNDVEYAG 133

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            L+KFDFLGL+TLT++  +L+ +  R        +D++ IP +D +++ +L    T  +FQ
Sbjct: 134  LVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLEDKKSFDMLQRSETTAVFQ 193

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----H 675
            LES GM+  ++ ++PDC ED+IALV+L+RPGP+ + +   + +RK+G+E I        H
Sbjct: 194  LESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDIEWQH 253

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
              + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD+LRRAMGKK   EM KQ+  F  G
Sbjct: 254  ESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPAEMAKQRSVFEDG 313

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A   GI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT +
Sbjct: 314  AKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTAD 373

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIM 854
            MDN +K+     +  +  ++I+PP +N+    F V D+    Y + AIKGVG      I+
Sbjct: 374  MDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIL 433

Query: 855  EASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            EA  +   F  L D C+RVD+KKLN+R+LE L+ +GA D  G  R  L+ SL +  K A 
Sbjct: 434  EARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSGAFDRLGPHRAALMSSLGDALKAAD 493

Query: 914  WVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
               K       ++F          + +          V  + E+  LG Y +GHP+  Y 
Sbjct: 494  QHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQVVLDGERETLGLYLTGHPITQYL 553

Query: 973  PILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
              + +  G    ++   T RG       +V++ +   T++G+RIG  T  + +   E   
Sbjct: 554  KEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVMVTKRGNRIGICTLDDRSGRLEVML 613

Query: 1032 F 1032
            F
Sbjct: 614  F 614


>gi|303262214|ref|ZP_07348158.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            SP14-BS292]
 gi|302636537|gb|EFL67028.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            SP14-BS292]
          Length = 968

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/844 (31%), Positives = 428/844 (50%), Gaps = 51/844 (6%)

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D Y       LA     P++           D E   VL A+  +  + +   P  + 
Sbjct: 65   GCDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSR 122

Query: 251  DHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                 + S +  +F    P+AL+N  ++    S+ L      LPRF              
Sbjct: 123  QDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSL-KLPRFNP------------ 169

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
                 AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + 
Sbjct: 170  --ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRS 227

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R +
Sbjct: 228  NGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPD 287

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I          
Sbjct: 288  FIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK--- 344

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+    
Sbjct: 345  SAYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KY 402

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
              ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET
Sbjct: 403  GDEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLEDKET 462

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+
Sbjct: 463  LALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQ 522

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + 
Sbjct: 523  EEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEM 582

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F 
Sbjct: 583  RASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFY 642

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA +   ++ P S+NT     K+ +  IY  L +IKGV   
Sbjct: 643  QIMLNSANSD------YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSND 696

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+
Sbjct: 697  LALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANL 753

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             ++ +        +  ++F     ++ +              +F  EQ +LG   S HPL
Sbjct: 754  FEFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPL 799

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                  +    I            +   +   V   +  +T+KG  + ++   +  K+ +
Sbjct: 800  Q----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLD 855

Query: 1029 ANFF 1032
               F
Sbjct: 856  VTLF 859


>gi|94313057|ref|YP_586266.1| DNA polymerase III subunit alpha [Cupriavidus metallidurans CH34]
 gi|93356909|gb|ABF10997.1| DNA polymerase III alpha subunit [Cupriavidus metallidurans CH34]
          Length = 1153

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/978 (24%), Positives = 423/978 (43%), Gaps = 64/978 (6%)

Query: 80   QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI 139
                 +T   +   P  P +VLL     G+  L E ++      + K S  +  S L + 
Sbjct: 162  GSRFTLTAAPEDTMP-PPRLVLLARNRIGFGDLCEFITLGRTRAE-KGSYLLYPSDLADP 219

Query: 140  GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-DRYRES 198
              E   +        +    +     V   +    +  FGDR ++ ++  +G+ +    +
Sbjct: 220  QPEQAHLRGMPDCLVVLLPDYCADLDVLRAQARWCRATFGDRAWMAMELLQGHAEAMHRA 279

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNR 257
            ++ Q++    +PLVA               DVL A+     +S   R      + +L+ R
Sbjct: 280  RLQQVSAETGVPLVAAGAVNMHVRSRKPLADVLTAIRIGQPLSACGRALAPNAEAHLRMR 339

Query: 258  SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
              +  ++    EAL  T+++A +C F L +     P  +  + +         LR +   
Sbjct: 340  QVLSRLYPR--EALAQTLKLADQCRFSLDMLRYEYPEELVPDGE----TPITYLRKEVER 393

Query: 318  GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
            G+  R   G       A +++++L  EL +I    +  +FL V D +++A++  I +  G
Sbjct: 394  GITERFPHGM------APEWKKQLKEELELIEEKHYEPFFLTVHDIVRFARQEGI-LCQG 446

Query: 378  RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
            RGS A S+  Y L IT++ P + +LLF RFL+ +R   PD D+DF   RR+EVI+Y+  K
Sbjct: 447  RGSAANSLVCYCLHITEVSPEQANLLFGRFLSRERDEPPDIDVDFEHQRREEVIQYIYGK 506

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            YG  R A   +  + ++++ALRDVGRAL +    V+++ K           +  I+    
Sbjct: 507  YGRHRAALAASLITYRSRSALRDVGRALGIDPGVVEQVVKGQAWWDGGAAFIDRIS---- 562

Query: 498  FREARLADPS---VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
                   DP    V +   ++++L G  RH S H  G VI    LS+LVP+      +  
Sbjct: 563  ---RYGLDPDSITVRQWASLTEQLRGFPRHLSQHVGGFVIARDKLSRLVPIENAAMENRS 619

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KVDLSLIPFDDHETY 609
            V Q++   +E  GL+K D L L  LT ++++L  +             +  +P  D +TY
Sbjct: 620  VIQWDKDDLESLGLLKVDVLALGMLTAIRRALTMIPNPDPERAGLPTRMEDLPDGDVKTY 679

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNG 667
             ++    T+G+FQ+ES   +  L  +QP    D++  V++ RPGPI   +   Y  R+  
Sbjct: 680  DMICKADTIGVFQIESRAQQSMLPRLQPREYYDLVVEVAIVRPGPIQGGMVHPYLKRREA 739

Query: 668  ----KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
                ++       +I  +L  T GV I+QEQVMQ+A   +G++  +AD LRR+M   + +
Sbjct: 740  FRLTRKLPTYFDDVIRRVLGRTLGVPIFQEQVMQLAIEAAGFTPGQADQLRRSMAAWRRR 799

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             ++ K ++  +   +  G  ++ A+ I + +  F +YGF +SHAA++A + Y +AW+K H
Sbjct: 800  GDLKKHQDALVRALTGRGYPESFALAICKQIEGFGEYGFPESHAASFAKLVYVSAWIKCH 859

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI------- 835
            YP  FL A +  +        +  QDAR+  +   P  V     +  +   R        
Sbjct: 860  YPEAFLCALLNSQPMGFYSPSQLVQDARRHGVTSQPVDVTISNWESTLEPRREGQNFRDV 919

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               +  +KG+    A  I  A   +PFDS+ED   R    + +   L +     +    G
Sbjct: 920  RLGMNRVKGMREAAALRIEAARVARPFDSVEDLARRASLDRHDIDALAAADALVS--LAG 977

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
            + R     +     + A          H ++  H+       + L +  +         +
Sbjct: 978  HRRQARWHARGAAVQTA----------HRDLL-HDAPPQEHALQLPEPKLGED---VAAD 1023

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
               LG     HPL + +  LR +      +      G  +R   +V  +Q+  T  G+  
Sbjct: 1024 YASLGLSLKCHPLTLLRHRLRALKFATARQLANCANGRRVRACGIVTVRQRPSTASGT-- 1081

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             + +  +         +P
Sbjct: 1082 IFTSIEDETGAVNVIIWP 1099



 Score = 78.1 bits (191), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 20/54 (37%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
           +V L   S+++ L GA     ++ +        +A+TD  ++           
Sbjct: 14 DYVELHCISNFTFLNGASHPQELISRAFQLGYSGLALTDECSVAGTARAHHAIK 67


>gi|303269801|ref|ZP_07355549.1| DNA polymerase III DnaE [Streptococcus pneumoniae BS458]
 gi|302640661|gb|EFL71060.1| DNA polymerase III DnaE [Streptococcus pneumoniae BS458]
          Length = 957

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/844 (31%), Positives = 428/844 (50%), Gaps = 51/844 (6%)

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G D Y       LA     P++           D E   VL A+  +  + +   P  + 
Sbjct: 54   GCDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSR 111

Query: 251  DHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                 + S +  +F    P+AL+N  ++    S+ L      LPRF              
Sbjct: 112  QDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSL-KLPRFNP------------ 158

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
                 AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + 
Sbjct: 159  --ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRS 216

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R +
Sbjct: 217  NGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPD 276

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I          
Sbjct: 277  FIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK--- 333

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+    
Sbjct: 334  SAYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KY 391

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
              ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET
Sbjct: 392  GDEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLEDKET 451

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+
Sbjct: 452  LALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQ 511

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + 
Sbjct: 512  EEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEM 571

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F 
Sbjct: 572  RASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFY 631

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +     +      +  DA +   ++ P S+NT     K+ +  IY  L +IKGV   
Sbjct: 632  QIMLNSANSD------YLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSND 685

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+
Sbjct: 686  LALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANL 742

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             ++ +        +  ++F     ++ +              +F  EQ +LG   S HPL
Sbjct: 743  FEFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPL 788

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                  +    I            +   +   V   +  +T+KG  + ++   +  K+ +
Sbjct: 789  Q----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLD 844

Query: 1029 ANFF 1032
               F
Sbjct: 845  VTLF 848


>gi|39934872|ref|NP_947148.1| error-prone DNA polymerase [Rhodopseudomonas palustris CGA009]
 gi|71151838|sp|Q6N8V0|DNAE2_RHOPA RecName: Full=Error-prone DNA polymerase
 gi|39648722|emb|CAE27244.1| putative DNA polymerase III alpha chain [Rhodopseudomonas palustris
            CGA009]
          Length = 1195

 Score =  665 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/907 (25%), Positives = 388/907 (42%), Gaps = 75/907 (8%)

Query: 170  RLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             L     L  D +++ L   +RG D+ R +++ ++A    +P +ATN+ L+         
Sbjct: 214  ALERLTALNADAVWLGLTPYYRGDDKRRLARLRRIAAVARVPCIATNDVLYHHPRRRALQ 273

Query: 229  DVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            DVL  V   T + +  R      + +LK  +EM  +F   PEA+  T+  A R SF L  
Sbjct: 274  DVLTCVREKTSIDKAGRRLEGNAERHLKPAAEMARLFRHDPEAIAETLRFADRISFTLDE 333

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                 P           K  +  L++    G++     G   +       R  +  EL +
Sbjct: 334  LKYHYPDEPVPPG----KTAQAHLQDLTEQGIKQYFPNGISDR------LRATIAKELAI 383

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I R  ++ YFL V D +++A+  +I +  GRGS A S   Y L IT +DP    LLFERF
Sbjct: 384  IERRGYAHYFLTVHDIVRYARSQDI-LCQGRGSAANSAVCYVLGITCVDPTEIDLLFERF 442

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            ++ +R   PD D+DF   RR+EV++Y+  +YG  R A + T    + ++A+RDVG+AL +
Sbjct: 443  VSEERDEPPDIDVDFEHSRREEVMQYIYRRYGRHRAAIVATVIHYRPRSAIRDVGKALGL 502

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHA 525
                   L   +       +      ++ + R+A L   +P + R +E++ +L G  RH 
Sbjct: 503  SEDVTAALADTVWGSWGKGL------NEMQVRQAGLDPHNPMIGRAVELATELIGFPRHL 556

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            S H  G V+    L   VP+     +D    +++   I+   ++K D L L  LT ++K 
Sbjct: 557  SQHVGGYVLTQDRLDSYVPIGNAAMADRTFIEWDKDDIDAVKMMKVDVLALGMLTCIRKG 616

Query: 586  LDFLAQRG-VKVDLSL-IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
               +AQ   V+  LS     DD+  Y +L    ++G+FQ+ES      L  ++P C  D+
Sbjct: 617  FHLIAQHKGVRFQLSDIKSEDDNAVYKMLQRGESIGVFQVESRAQMNMLPRLKPRCFYDL 676

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQE 693
            +  V++ RPGPI  D +  Y  R+NG+E +V   P         +  +L +T GV ++QE
Sbjct: 677  VIEVAIVRPGPIQGDMVHPYLRRRNGQEPVVYPSPSGEAGDKNELRQILGKTLGVPLFQE 736

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            Q M+IA   + ++  EA+ LRRAM   +    + K + + I    K G   T A N FE 
Sbjct: 737  QAMRIAIEAAHFTPDEANQLRRAMATFRNVGTIGKFEAKMIGNLVKRGYDATFAKNCFEQ 796

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  F  YGF +SHAA++A + Y +AWMK  +P  F  A +  +        +   DAR  
Sbjct: 797  IKGFGSYGFPESHAASFAKLVYVSAWMKCEHPDAFCCALLNSQPMGFYAPAQIVGDARSN 856

Query: 813  NIQIMPPSVNTPCVDFKVG-----DNRIYYSLAAIKGVGTTT-ARHIMEASADKP----- 861
             +++ P  V+       +       + +      I G          ++  A +P     
Sbjct: 857  GVEVRPVDVSFSEGQCTLEERCGRHHAVRLGFRMIDGFRWADPDEERVQLEAGEPPSDDW 916

Query: 862  ------------FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
                        F SLE F        L +R L  L  A A    G  R   L ++  + 
Sbjct: 917  AARIVAARARGAFTSLEQFAR---ITALPKRALILLADADAFRSLGLDRRAALWAVRRLP 973

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                            +F        +            +     + + +     GHP++
Sbjct: 974  DDV----------PLPLFEAASAREQEDERAAPLPAMPMAEHVVADYQTVRLSLKGHPME 1023

Query: 970  VYKPILRKMGIKGYEESVATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
              + +     +    E   + +   G  +R A +V+ +Q+  +  G  + ++T  +    
Sbjct: 1024 FLRALFAAERVVTCREVSRSEQRASGCWLRCAGVVLVRQRPGSANG--VIFMTIEDETGI 1081

Query: 1027 YEANFFP 1033
                 +P
Sbjct: 1082 ANIVVWP 1088



 Score = 90.4 bits (223), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 20/134 (14%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE----FSQKAC 63
           S  +  + V +++S LEG     + + + +     AI I D N L   +     F  +  
Sbjct: 2   SARYAEIGVTTNFSFLEGGSHPQDYVHEASRLGLDAIGIADRNTLAGVVRAFSEFDNEEL 61

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
               + +IG +L                     P ++   +    Y RL  L+S   L  
Sbjct: 62  IHKPKLLIGTRLCFA---------------DGTPDLLAYPTDRAAYGRLCRLLSAGKLR- 105

Query: 124 QGKQSVRICLSWLQ 137
            GK    +  + L+
Sbjct: 106 AGKGECHLTFADLE 119


>gi|262183812|ref|ZP_06043233.1| error-prone DNA polymerase [Corynebacterium aurimucosum ATCC 700975]
          Length = 953

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/990 (27%), Positives = 428/990 (43%), Gaps = 106/990 (10%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F++ A   G+  + G +L +D                    + +L  T EGY+RL  L
Sbjct: 1    MKFAEAAAKVGLPAVFGAELSLDP-----------------APLTVLARTPEGYRRLSRL 43

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +SR ++    K  V      L EIG +             D   F    +  E   L   
Sbjct: 44   ISRAHMEAGEKGVVSYPS--LAEIGAQLQ-----------DECLFLVGWEWVEHFDLLVD 90

Query: 176  KLFGDRLYVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVL--- 231
             +  D + +     +  +      ++  L     +       +         A   L   
Sbjct: 91   GIKIDSMVLEYACTQLPEDADHHLLMDSLPVPRAIATARPAAAAREHARLAGAKQALSRR 150

Query: 232  MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
            +A+A ++  S           +L++  +M  +  + PE +  TV +   CSF  +  AP 
Sbjct: 151  LALADASPNSHPM-----GSSWLRSGEQMARLLPERPELIAETVRVLEECSFTWEALAPN 205

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            LP F   E       E + L +        R A          +   +++ +EL V+ ++
Sbjct: 206  LPDFDVPEG----HTEMSWLEHLTFERAAARYA---TRPKEIRERAWEQMRYELGVVKQL 258

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFLIV D + + K+ NI +  GRGS A S   +AL IT+ +P+   LLFERFL+PD
Sbjct: 259  GFPGYFLIVCDLVDFCKRENI-LCQGRGSAANSAVCFALGITNAEPISAGLLFERFLSPD 317

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD DID    RR+EVI+YV  K+G ER AQ+    + + K ALRD  RAL  P   
Sbjct: 318  RDGPPDIDIDIESGRREEVIQYVYAKHGRERAAQVANVITYRRKGALRDAARALGYPQGS 377

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             D   K I   P+   SL                         + +  G  RH   H+ G
Sbjct: 378  ADAWSKGIAPAPSDVESL-------------------------ADQFLGQPRHLGIHSGG 412

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +V+ DRP++ +VP+      +  V Q++      AGL+KFD LGL  L  L   +D + +
Sbjct: 413  MVLCDRPIADVVPVEWARMENRSVLQWDKDDCAAAGLVKFDLLGLGMLEALHHMMDLVEE 472

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              G  V+L  +   D E Y +L     +G+FQ+ES      L  ++P    D++  V+L 
Sbjct: 473  STGRMVNLWELDLADSEVYDMLCRADAVGVFQVESRAQLSTLPRLKPRVFFDLVVEVALI 532

Query: 651  RPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGPI       Y  R++GKE +   HP+++  L +T G+ ++QEQ+MQIA   +G+S +
Sbjct: 533  RPGPIQGGSVHPYLRRRDGKEPVTYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFSGA 592

Query: 709  EADVLRRAM-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHA 766
            EAD LRRAM  K+   +M   K+RF  G  + NGI   +A  ++  +  FA YGF +SH+
Sbjct: 593  EADDLRRAMGSKRSPAKMAALKQRFYEGLEETNGIVGEVADKLWAKIVAFAAYGFPESHS 652

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
             ++A + Y +AW K +YP +F    +  +       +   QDAR+  ++++P SVN    
Sbjct: 653  QSFASLVYFSAWFKRYYPAQFCVGLLRAQPMGFYSPQSLIQDARRHGVEVLPVSVNESGR 712

Query: 827  DFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
            + +V     G  RI   L  IKG+G   A  I  A+   PF  + D   R D    +   
Sbjct: 713  EARVVVGADGQTRIRLGLNLIKGLGDKAADRIEAAA---PFAGVPDLSRRADLTVDH--- 766

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            +E+L  AGALD FG  R Q L         A      R      + A         I   
Sbjct: 767  VEALAVAGALDVFGVDRRQALWQ-------AGVAATERAGMLPGLSA---------IEAP 810

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                 ++      +    G   +  P++  +  L+  GI    +      G  +R+A +V
Sbjct: 811  FLPGMSAFELMAADVASTGVTHNQQPMEQVRGELQSRGILAAADLPGVEDGTRVRIAGVV 870

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
              +Q+ +T  G  + +    +         
Sbjct: 871  THRQRPQTAGG--VVFFGLEDETGLMNVMV 898


>gi|78044029|ref|YP_359806.1| DNA polymerase III subunit alpha [Carboxydothermus hydrogenoformans
            Z-2901]
 gi|77996144|gb|ABB15043.1| DNA polymerase III, alpha subunit [Carboxydothermus hydrogenoformans
            Z-2901]
          Length = 964

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/1026 (29%), Positives = 500/1026 (48%), Gaps = 107/1026 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V L + + YS LE ++ L+ +++K A     A+ I DT NLF A +    A    ++ +
Sbjct: 4    YVPLNIKTGYSFLESSIKLDGLMEKTARLGLKAVGIADT-NLFGAAKAFFAAKNFNLKLL 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +                 G         + L     EGY+ L+   ++ Y   +      
Sbjct: 63   L-----------------GLEVKSEAGPLWLYARDNEGYKFLVRAATQKYFGKEV----- 100

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV-NLQRH 189
              LS  + +   GLI+L G                   K +L FK+ FGD  Y+      
Sbjct: 101  --LSLAEILEARGLIILGGAEF-----------LAAGLKNVLNFKEAFGDDFYLLAKVDD 147

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +      ++ +A  + L +  + N  FL +  Y  + +L A+ ++  + Q  +   +
Sbjct: 148  LLTNPENIRALLAIAKKYRLKIAGSPNPRFLEKNHYFFYRLLCAMKNNVTLDQIKKRT-S 206

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P  Y  + +EM  IF+ +  +L+ T+EIA +           LP F          E++ 
Sbjct: 207  PYAYYLSPNEMAKIFAPINHSLKTTLEIAEKVGDFFPGDDLKLPEFTCP------GEKDE 260

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR   + G   R        G  +++ ++RL++EL +I R+  +GYFLIV D +++++ 
Sbjct: 261  YLRKLCLEGAYARY-------GRISREVKERLNYELEIIKRLGLAGYFLIVHDLVRFSRS 313

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             ++ +GPGRGS AGS+  Y L +T++DPL+  LLFERFLNP R  +PD D+DF    R++
Sbjct: 314  QDLALGPGRGSAAGSLVLYLLGVTEVDPLKHGLLFERFLNPGRKVLPDVDLDFGHLDREK 373

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VIRY+  KYG + VA I T  +  A+ A+R+V +AL  P   ++++  L+P      +  
Sbjct: 374  VIRYLFQKYGDDGVAHIGTVITFAARGAVREVAKALGYPEPLLNKITPLLPAFGGSSIE- 432

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +A+      R+A L DP + +LL +++  EG  RH S HA+G+V+  R   + +P+    
Sbjct: 433  KAVRALPEVRKA-LEDPVMRKLLTLARFFEGHPRHFSVHASGLVVARREDLEQIPLASSF 491

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
            R +  +TQF+   +E+ G +K D LGL+ LT++ +S             + IP +D ET+
Sbjct: 492  RGE-KITQFDKDDVERLGFLKVDLLGLRLLTVVHRSRRS----------ASIPLNDGETW 540

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNG 667
              +    T+G FQLES GMR  L  + P  IE++  +++L+RPGP+++     Y   K+ 
Sbjct: 541  KRIQKAQTIGCFQLESDGMRYYLGKVAPRNIEELAQVLALFRPGPLESGQVDNYLLAKHQ 600

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K   V  HP + P+L+E+ G+++YQEQV++IA L++G+ L+++D LRRAM K  ++ M +
Sbjct: 601  KAPPVYPHPALKPVLEESHGLVLYQEQVLKIAALVAGFDLAKSDDLRRAMSKHDRKIMAE 660

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             KE F+ GA KNG S   A  IF LL  FA YGFNK+H  +YA ++Y + ++ TH+P  +
Sbjct: 661  LKEEFMMGAVKNGYSAADAEKIFSLLQNFAGYGFNKAHGVSYAYLAYYSTFLITHWPKTY 720

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
                +  +         + ++A +  I+I+ P +N     F    + I      I+GVG 
Sbjct: 721  FTLLLNSD-GGFYPPSFYLREAGRRGIKILLPDINESQYGFTEVKDGIRIGFKDIEGVGP 779

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A  I+E    +P+ S  DF  R   K L+   + +L+ AGA D FG SR  LL  L+ 
Sbjct: 780  KAASIILEGRT-RPYTSFWDFWQRAGHK-LSVETIRNLILAGAFDGFGVSRESLLYCLEV 837

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
             +                +F    G F++      FS        + E+   G Y     
Sbjct: 838  YK----------------LFKPIPGLFAE----PNFS-------LKKEKEA-GDYL---- 865

Query: 968  LDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
                K   + +G+K + +  A +   G  + +   V   +++ TRKG     +T     +
Sbjct: 866  ----KKAQKVIGVKFWLDLEAKVEKTGEGLIITGEVTFGRRRYTRKGEPFLTLTLENRQE 921

Query: 1026 EYEANF 1031
             YE   
Sbjct: 922  FYEVLV 927


>gi|326781155|ref|ZP_08240420.1| DNA polymerase III, alpha subunit [Streptomyces cf. griseus
            XylebKG-1]
 gi|326661488|gb|EGE46334.1| DNA polymerase III, alpha subunit [Streptomyces cf. griseus
            XylebKG-1]
          Length = 1155

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/1060 (25%), Positives = 476/1060 (44%), Gaps = 64/1060 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL V S +S   GA    +++ + A     A+A+TD +++  A+  ++   +AG++PI
Sbjct: 4    FTHLHVASGFSARYGASHPQDLVRRAAELGMGALALTDRDSVTGAVRHAKACLSAGVRPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS-------IVLLVSTAEGYQRLIELVSRMYLLD 123
             G  L +   D  + +++ +TP             I LL  +  G+ R+  LVS  +   
Sbjct: 64   FGVDLAVPAFDPARASHRPRTPVRGGGHVTEPRLRITLLAGSVHGWARICRLVSAAH-AH 122

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                        L+E   E ++ + G +S P+ RA       +AEK L+ ++++ G+ L 
Sbjct: 123  PVDGFPVASWEALREGLGEDVVAILGPTSEPV-RALAAGRPDIAEKLLVPWREIAGEGLL 181

Query: 184  -VNLQRHR----GYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +    +     G    R +   + L     +P V TN   +   E +   DVL A    
Sbjct: 182  RLEAVAYGLSGLGAGSVRLAAHTLALGDRLGVPTVLTNAVRYERREQHRLADVLDAARLL 241

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP-----------EALENTVEIARRCSFILQ 286
              V ++  P    + YLK+ +EM  +   +              +E T   A +C+    
Sbjct: 242  RPVPRRG-PLDPGERYLKSGAEMAEVAERVAAAASAPAGRGRRLIEETAATAEQCAVDPV 300

Query: 287  VHAPI-LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR-QRLDFE 344
                +    F E           + +R      L  R   G  A+G         RL +E
Sbjct: 301  RDLGLGRAHFPEPHVVGAGTRPGDGMRL-----LRQRSEAGMTARGLDRDVRAMDRLGYE 355

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L VI R+ +  YFL VA  +   +   I V   RGSGAGS+  ++L I   DPL   LLF
Sbjct: 356  LGVIERLGYEAYFLAVAQVVADVRSMGIRVA-ARGSGAGSMVNHSLFIATADPLSHRLLF 414

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFL+  R ++PD D+D   DRR EV   +  ++G ERVA      + +A+ ALRD G A
Sbjct: 415  ERFLSERRTALPDIDLDVESDRRLEVYDRIFERFGSERVAVTGMPETYRARHALRDTGLA 474

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L +    VDR+ K  P+  A  +   A+++    R+          L E+++ L+ L R 
Sbjct: 475  LGIRPQTVDRIAKSFPHIRACDIG-SALSELPELRQLAAEADQYGPLWELAEGLDALPRG 533

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             + H  G+++ D  L   +P+        P  Q +   +E  GL+K D LG++  + +  
Sbjct: 534  FAMHPCGVILSDASLLGRLPVQPAPGGAYPTVQADKHDVEDLGLLKLDVLGVRMQSAMAH 593

Query: 585  SLDFLA----QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++  +     +         +   D  T+ L+ +   LG FQLESSG +  +  +QP  +
Sbjct: 594  AVAEIRRTTGRHIDLDSPDHVDLADEPTFELIRSTKVLGCFQLESSGQQDLIARLQPRHM 653

Query: 641  EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            +D+IA +SL+RPGP+   +   +   ++G E+    HP + P++ +T GV+I+ EQ+M I
Sbjct: 654  QDVIADISLFRPGPVAGGMPARFIAARHGIEEPRYPHPDLVPIMDDTYGVVIWHEQIMMI 713

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
               ++G   + ADV RRA+       + K +  F   A + G +  +   +++++ +F  
Sbjct: 714  LATMTGCDRAAADVARRALA--DAGRLPKVEVWFRRCAGERGYTPDVIDEVWDIVKEFGA 771

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGF ++HA A+AV + Q+AW+KTHYP  F A  +  +   +   +   QDA+QF + I+P
Sbjct: 772  YGFCRAHAVAFAVPAVQSAWLKTHYPAAFFAGLLQHDP-GMWAPRVLVQDAKQFGVAILP 830

Query: 819  PSVNTP----CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
              VNT      V+       +  +L+ ++G+    +  I    A +P+  L+D   R   
Sbjct: 831  VDVNTSRGAHSVEPTADGWGVRLALSTVRGITEAESARI---EAGQPYTGLQDLWLRA-- 885

Query: 875  KKLNRRVLESLVFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
             + +  + + L+  GAL     G +R  LL     + + A+   +   +    +   ++ 
Sbjct: 886  -RPSLPLAQRLIRIGALAPLQGGLTRRDLLLQATELHRSAR--NRTAIDGQLPL--GDET 940

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               +   L + +  +       E  VL    S H L+ +  +L ++G        A  RG
Sbjct: 941  HAGEPAGLPEMTGRDV---MSAEIDVLSIDVSRHLLEHHHRLLAELGATDARHLQAMRRG 997

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + +A +  S Q      G R+ +VT  + +   +  FF
Sbjct: 998  EQVLVAGVRASTQTPPIPSGKRVIFVTLEDGSGLVDLAFF 1037


>gi|300311573|ref|YP_003775665.1| DNA polymerase III subunit alpha [Herbaspirillum seropedicae SmR1]
 gi|300074358|gb|ADJ63757.1| DNA polymerase III, alpha subunit protein [Herbaspirillum
           seropedicae SmR1]
          Length = 942

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/923 (26%), Positives = 397/923 (43%), Gaps = 48/923 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L+GA   + ++ +  A    A+AITD   L   +     A      
Sbjct: 6   PEYAELYCRSNFSFLQGASHAHELVQRAIALDYRALAITDECTLAGVVRAY-AAWKEQFD 64

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPF--PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
                   + +    + T     P       ++V L    EGY  L EL++        K
Sbjct: 65  KGRTQDFKLIIGSCFRFTGLEDEPAHPLAALTLVALARNREGYGNLSELITLARTR-AAK 123

Query: 127 QSVRICLSWL--QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            S  +    L         L  L       +         +  + +L  F  L   R +V
Sbjct: 124 GSYLLHPEDLSGPPPALSHLRALPDCQLILVPDYPA--DEETLDAQLRWFAPLAPGRSWV 181

Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            + R +R  D    + +      H LPL A  +            DV+ A+     V + 
Sbjct: 182 GITRLYRPLDDLHRAALEAATRRHGLPLAAVGDVQMHQRSRKYLQDVVTAIRLGQPVQEC 241

Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                   + +L++R  +  +    P  L  T+ IA  C F L       P     E   
Sbjct: 242 GHALAPNAEQHLRSRVRLGMV--HTPATLAQTLAIAADCRFSLAELRYEYP----DELVP 295

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
           +     + LR + +AG   R  QG           R++++ EL +IA+ ++  YFL V D
Sbjct: 296 LGMSAADYLRQQTLAGAAKRYPQGLPGG------VREQIEAELALIAQKEYEAYFLTVYD 349

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +Q+A+   I +  GRGS A S   Y L +T++DP    LLF RF++  R   PD D+DF
Sbjct: 350 LVQFARSRGI-LCQGRGSAANSAVCYCLGVTEVDPTSTRLLFARFISEKREEPPDIDVDF 408

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              RR+EVI+++  KYG  R A      S + + ALR+VG+AL +  + VD + K     
Sbjct: 409 EHQRREEVIQHIYRKYGRRRAALAAAVHSYRPRGALREVGKALGVDAAIVDAVAKSQHWF 468

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            +    L   A+     E     P +     I+ KL    RH S H  G VI    LS+L
Sbjct: 469 DSREELLARFAEAGLDPEL----PQIGLWASITGKLLRFPRHLSQHTGGFVIARGQLSRL 524

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDLS 599
           VP+      +  V +++   +E   L+K D L L  LT L+++L+ ++ R      + + 
Sbjct: 525 VPIQNAAMPERCVIEWDKDDLESLKLLKVDVLALGMLTALRRTLELVSLRRGLPEVMQMH 584

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP +D  T+ ++    T+G+FQ+ES      L  MQP    D++  V++ RPGPI   +
Sbjct: 585 AIPREDPATFEMICKADTIGVFQIESRAQMSMLPRMQPRTQYDLVVQVAIVRPGPIQGGM 644

Query: 660 --VYNNRKNGKEK---IVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
              Y  R+    +               I  +L+ T G+ I+QEQVM +A   +GYS SE
Sbjct: 645 VHPYLRRRELVREGGSFDYPDNTSKSGKIKKVLERTLGIPIFQEQVMDVAIEAAGYSPSE 704

Query: 710 ADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
           AD LRR+M   K K  M    ER + G + NG S+  A +IF+ +  F +YGF +SHAA+
Sbjct: 705 ADDLRRSMAAWKRKGGMGPHYERLVLGMTDNGYSREFAESIFKQIEGFGEYGFPESHAAS 764

Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
           +A+++Y ++W+K H P  FL   +  +        +  QDAR+  +Q++P +V     + 
Sbjct: 765 FALLTYFSSWLKCHEPEAFLCGLLNSQPMGFYSPSQLIQDARRHGVQVLPANVVRSRWES 824

Query: 829 KVG-------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
            +           +   L+ ++ +    A+ I +A A +PF  ++D   R    +   R 
Sbjct: 825 TLELPSSAGARPAVRLGLSLLRSMPAEAAQRIEQARAQRPFADVDDLARRAGLDRPACRH 884

Query: 882 LESLVFAGALDCFGYSRMQLLQS 904
               +        G  R  +  +
Sbjct: 885 WRQAMPCANWPATGARRSGMRWA 907


>gi|116491030|ref|YP_810574.1| DNA polymerase III, alpha subunit [Oenococcus oeni PSU-1]
 gi|290890511|ref|ZP_06553586.1| hypothetical protein AWRIB429_0976 [Oenococcus oeni AWRIB429]
 gi|116091755|gb|ABJ56909.1| DNA polymerase III, alpha subunit [Oenococcus oeni PSU-1]
 gi|290479907|gb|EFD88556.1| hypothetical protein AWRIB429_0976 [Oenococcus oeni AWRIB429]
          Length = 960

 Score =  660 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/1025 (27%), Positives = 451/1025 (44%), Gaps = 110/1025 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  LQV S Y LL    S   ++  +      A  + + + L+ A +F Q A +  I+P
Sbjct: 2    SYTPLQVFSEYDLLRNPDSTIELVKALKKRGFQAAVLANHDYLYGAEKFRQAAISVNIRP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  +                       ++ +     GYQ L+++ + +      K S 
Sbjct: 62   IIGLTISDTDHGE----------------VIFVSKNYSGYQNLMKISTYLAF---NKNSQ 102

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I      +     LI   G            NSS    K L           Y  +   
Sbjct: 103  FILKENNLDFSNLALIFQDGKE------TKIKNSSSFTRKELG----------YFPIDWV 146

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            +  D    S +  +           N   F  + +         +    +  +       
Sbjct: 147  KKNDSVTASALQHIEK---------NELNFTGKSE---------IVGKYLKDENFYASNL 188

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            PD  LKN                N   IA             LP F      D +   + 
Sbjct: 189  PDEILKN----------------NQHFIAD-IVDDWPKSEKHLPIFPLP---DSENNPKK 228

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L      GLE R     I      + Y++R+D EL  I ++  + YFL+V D I +A+ 
Sbjct: 229  YLSKLVKLGLENRFKNKDI-----PEAYQKRIDRELRTIFQLDLADYFLVVWDIINFARH 283

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             NI +G GRGS  GS+ AYAL IT IDP+++ L FERFLNP R+ +PD DID   +RR E
Sbjct: 284  ENIQLGAGRGSAVGSLVAYALYITTIDPIKYDLYFERFLNPKRIQLPDIDIDVPGNRRQE 343

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            ++ Y+Q KY  +  +QI TF + + + A+RD  R        + R  + +  +       
Sbjct: 344  IVEYLQKKYSLDNFSQIGTFDTFKRRLAVRDSARIFASSEGTLKRFSRFMAQNNDALED- 402

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
               AD +   E     P+   ++ ++Q + GL RH   HAAGIV+    L   VP+  + 
Sbjct: 403  ---ADPNNLPETIAELPNSSEIISLAQSISGLPRHVGIHAAGIVLSPEKLVNYVPL--NQ 457

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
             SD+ VTQF+   +E  GL+KFD L L  L ++      + Q    K +L  I  +D + 
Sbjct: 458  VSDITVTQFDKDDVEAIGLVKFDLLRLTNLDMIADIRSLIQQHYGKKFNLDSIDLNDKKV 517

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
                    T GIFQ ES   + AL+ +     +DI+A+ +L RPGP +NI +Y   K   
Sbjct: 518  LDSFKNLQTNGIFQFESESAKSALKQIAVSSFDDIVAVNALNRPGPSENIPIYAQGKKDP 577

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
              I  I   +  +L  T GVIIYQEQVMQIAQ+ +G++L EADV R A+G K +E++  Q
Sbjct: 578  NHIEIIDKSLQKILLPTYGVIIYQEQVMQIAQVYAGFTLGEADVFRAAIGHKNEEKLFAQ 637

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
             + FI GA + G  +  A  IF  + +FA+YGFNKSHA AY+ ++++ A++K ++P+EF 
Sbjct: 638  HDAFIKGAVEKGHQQEQAEEIFAYIERFANYGFNKSHAVAYSKLAFEMAYLKIYFPLEFF 697

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            +  +  +  N      + QD +   I+++ P +N     F      IY  L  IKG+   
Sbjct: 698  SVLLNYDTKNS-----YLQDIKNKGIKLLGPDINHAERGFISDKGVIYVGLGKIKGLNRK 752

Query: 849  TARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                I++       F  L DF  R+    +    +  L +AG+LD FGY+R +L  +  +
Sbjct: 753  VIDEIVKERNSHGLFSGLTDFLQRMAGSDIGESDIVQLTYAGSLDHFGYNRQELKTNAAS 812

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +    +             F    G+   +  +      +   R  +E+ VLGF  SGHP
Sbjct: 813  LITAME-------------FG---GSLLSETKISAIGEMSLLDRLAHEKEVLGFTISGHP 856

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            +D  +  + K G     +  A      +++A M+ S +  + + G+++ +V+ S+ + E 
Sbjct: 857  IDSLRKEIVKKGYTQINDLKA---DQIVKMAVMIDSIRTTRDKNGNQMAFVSISDGSGES 913

Query: 1028 EANFF 1032
                F
Sbjct: 914  SLTVF 918


>gi|182440484|ref|YP_001828203.1| putative DNA polymerase III alpha subunit [Streptomyces griseus
            subsp. griseus NBRC 13350]
 gi|178469000|dbj|BAG23520.1| putative DNA polymerase III alpha subunit [Streptomyces griseus
            subsp. griseus NBRC 13350]
          Length = 1155

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/1060 (25%), Positives = 476/1060 (44%), Gaps = 64/1060 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL V S +S   GA    +++ + A     A+A+TD +++  A+  ++   +AG++PI
Sbjct: 4    FTHLHVASGFSARYGASHPQDLVRRAAELGMGALALTDRDSVTGAVRHAKACLSAGVRPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS-------IVLLVSTAEGYQRLIELVSRMYLLD 123
             G  L +   D+ +  ++ +TP             I LL  +  G+ R+  LVS  +   
Sbjct: 64   FGVDLAVPAFDSARAPHRPRTPVRGGGHVTEPRLRITLLAGSVHGWARICRLVSAAH-AH 122

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                        L+E   E ++ + G +S P+ RA       +AEK L+ ++++ G+ L 
Sbjct: 123  PVDGFPVASWEALREGLGEDVVAILGPTSEPV-RALAAGRPDIAEKLLVPWREIAGEGLL 181

Query: 184  -VNLQRHR----GYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +    +     G    R +   + L     +P V TN   +   E +   DVL A    
Sbjct: 182  RLEAVAYGLSGLGAGSVRLAAHTLALGDRLGVPTVLTNAVRYERREQHRLADVLDAARLL 241

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP-----------EALENTVEIARRCSFILQ 286
              V ++  P    + YLK+ +EM  +   +              +E T   A +C+    
Sbjct: 242  RPVPRRG-PLDPGERYLKSGAEMAEVAERVAAAASAPAGRGRRLIEETAATAEQCAVDPV 300

Query: 287  VHAPI-LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR-QRLDFE 344
                +    F E           + +R      L  R   G  A+G         RL +E
Sbjct: 301  RDLGLGRAHFPEPHVVGAGTRPGDGMRL-----LRQRSEAGMTARGLDRDVRAMDRLGYE 355

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L VI R+ +  YFL VA  +   +   I V   RGSGAGS+  ++L I   DPL   LLF
Sbjct: 356  LGVIERLGYEAYFLAVAQVVADVRSMGIRVA-ARGSGAGSMVNHSLFIATADPLSHRLLF 414

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFL+  R ++PD D+D   DRR EV   +  ++G ERVA      + +A+ ALRD G A
Sbjct: 415  ERFLSERRTALPDIDLDVESDRRLEVYDRIFERFGSERVAVTGMPETYRARHALRDTGLA 474

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L +    VDR+ K  P+  A  +   A+++    R+          L E+++ L+ L R 
Sbjct: 475  LGIRPQTVDRIAKSFPHIRACDIG-SALSELPELRQLAAEADQYGPLWELAEGLDALPRG 533

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             + H  G+++ D  L   +P+        P  Q +   +E  GL+K D LG++  + +  
Sbjct: 534  FAMHPCGVILSDASLLGRLPVQPAPGGAYPTVQADKHDVEDLGLLKLDVLGVRMQSAMAH 593

Query: 585  SLDFLA----QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++  +     +         +   D  T+ L+ +   LG FQLESSG +  +  +QP  +
Sbjct: 594  AVAEIRRTTGRHIDLDSPDHVDLADEPTFELIRSTKVLGCFQLESSGQQDLIARLQPRHM 653

Query: 641  EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            +D+IA +SL+RPGP+   +   +   ++G E+    HP + P++ +T GV+I+ EQ+M I
Sbjct: 654  QDVIADISLFRPGPVAGGMPARFIAARHGIEEPRYPHPDLVPIMDDTYGVVIWHEQIMMI 713

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
               ++G   + ADV RRA+       + K +  F   A + G +  +   +++++ +F  
Sbjct: 714  LATMTGCDRAAADVARRALA--DAGRLPKVEVWFRRCAGERGYTPDVIDEVWDIVKEFGA 771

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGF ++HA A+AV + Q+AW+KTH+P  F A  +  +   +   +   QDA+QF + I+P
Sbjct: 772  YGFCRAHAVAFAVPAVQSAWLKTHHPAAFFAGLLQHDP-GMWAPRVLVQDAKQFGVAILP 830

Query: 819  PSVNTP----CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
              VNT      V+       +  +L+ ++G+    +  I    A +P+  L+D   R   
Sbjct: 831  VDVNTSRGAHSVEPTADGWGVRLALSTVRGITEAESARI---EAGQPYTGLQDLWLRA-- 885

Query: 875  KKLNRRVLESLVFAGALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
             + +  +++ L+  GAL       +R  LL     + + A+   +   +    +   ++ 
Sbjct: 886  -RPSLPLVQRLIRIGALAPLQGRLTRRDLLLQATELHRSAR--NRTAIDGQLPL--GDET 940

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               +   L + +  +       E  VL    S H L+ +  +L ++G        A  RG
Sbjct: 941  HAGEPAGLPEMTGRDV---MSAEIDVLSIDVSRHLLEHHHRLLAELGATDARHLQAMRRG 997

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + +A +  S Q      G R+ +VT  + +   +  FF
Sbjct: 998  EQVLVAGVRASTQTPPIPSGKRVIFVTLEDGSGLVDLAFF 1037


>gi|50365400|ref|YP_053825.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
 gi|50363956|gb|AAT75941.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
          Length = 992

 Score =  658 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/1036 (28%), Positives = 478/1036 (46%), Gaps = 100/1036 (9%)

Query: 10   SFVHL-QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            +F+ L  V S Y+  E  + +N+ +     +    +   +   ++   EF QKA    I+
Sbjct: 3    NFIPLINVRSVYNFQESLIKINDYISFAKNEGFKHLFYCENKTMYGVAEFFQKALKENIK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG                          I L+      Y+    + S           
Sbjct: 63   PIIGL----------------SIELNDKKIITLIPKNKAAYKYTCIISS----------- 95

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                                                ++ ++ +    K + D     +  
Sbjct: 96   ------------------------------NLNEDVKLNDEEIFDLLKKYVDNNSFLITN 125

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                + +  +  +          +  N   ++S+++ + +  L A+ ++   ++ ++   
Sbjct: 126  VDNKNEFFNNAEI---INTNDKKIFFNPIRYISDDEQDLYKGLFALKNNLTSTEANKIYK 182

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + Y     E+  IF +  E  +   +      F  + +   + +FI  +         
Sbjct: 183  INEAYPY-ADEISQIFPNSEEIGKYISDNVNLNIF--EDNEKHMAKFIAPDNMP----SF 235

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L+ K +AGL+       +      ++Y QRL+ EL++I +  F+ YFLIV D++ +A+
Sbjct: 236  SYLKQKCLAGLQHYFKN--VKHEPIKEEYIQRLNHELSIIEKTGFADYFLIVHDYVSFAR 293

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I VGPGRGS AGS+ ++ L IT IDP+ ++LLFERFLNP+R++MPD DIDF  +RRD
Sbjct: 294  RNDIIVGPGRGSAAGSLVSFLLRITTIDPIEYNLLFERFLNPERITMPDIDIDFQDNRRD 353

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI Y+  KYG   VA I+T+ ++  K+A RD  R  Q+  + V+ + K + +D    +S
Sbjct: 354  EVIEYLFEKYGKYNVATIVTYQTIAFKSAFRDACRIYQIDMNLVNLITKSLTDDY---LS 410

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
               I    +  +          + ++ +KL G  R   THAAGI+I D  L  ++P+ R 
Sbjct: 411  FDEILKTQKLIKEYSEKAEFKNIFKLVEKLIGCPRQTGTHAAGIIISDTDLRNVLPI-RQ 469

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              + +  TQF+M ++E  GLIK D LGL+ LT L++ LD + +       LS I  +D +
Sbjct: 470  GLNGIYQTQFDMNYLEDIGLIKMDLLGLRNLTTLKEILDLVKKNHNEDFTLSKIDLNDAK 529

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ +L    T GIFQLES GM   +  M+ + I DI A  SLYRPGP + I  Y N KN 
Sbjct: 530  TFKILREGNTTGIFQLESQGMTNLIIDMKVNNINDISAASSLYRPGPQEMIPDYINNKNN 589

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            + ++  I   +  +L  T GVI+YQEQVMQI QL+  +SL +AD++RRAMGKK  E M +
Sbjct: 590  R-RVSLIDKSLANILLPTYGVIVYQEQVMQILQLVGNFSLGKADIVRRAMGKKQIEYMME 648

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             K+ FI+ A  N  S   AV I+  + +FA YGFNKSHA AY+ I Y  AW K HYP EF
Sbjct: 649  VKDEFINNAMANNYSNEKAVAIWNWIEQFAKYGFNKSHAIAYSYIGYWLAWFKAHYPAEF 708

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN---------TPCVDFKVGDNRIYYS 838
              A +   + N  K  ++ ++ +QF I+++ PSV          T  +++   +NRIY  
Sbjct: 709  YTALLNGVVGNPSKTSRYIKEVKQFGIEVIKPSVKPAISKKLEDTIKLNYTSSENRIYMP 768

Query: 839  LAAIKGVGTTTARHI--MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            L  IKG+G      +  +       FD L +F   + +K LN      L  AG+ DCFGY
Sbjct: 769  LTLIKGIGRDFIATLNKVYEEHSNLFDDLNNFFFYMKNKGLNESNYTLLAKAGSFDCFGY 828

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            ++  ++ + D I        +N      ++          KI        N  V    E+
Sbjct: 829  NKSTMVANKDFIFSAMMAFNEN-----ISL------DKQTKIENLFEEELNEEVESSYEK 877

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             V GFY S +PL   K            + V  +    + +   +   +  K +    + 
Sbjct: 878  EVFGFYISSNPLTKLKNENAFFKPNDIIKLVENMND--VNIIGQISGIRVIKDKNQKNMA 935

Query: 1017 WVTFSEPAKEYEANFF 1032
            +VT  +  +  +   F
Sbjct: 936  FVTVFDDTESIDLTVF 951


>gi|261221299|ref|ZP_05935580.1| error-prone DNA polymerase [Brucella ceti B1/94]
 gi|265997260|ref|ZP_06109817.1| error-prone DNA polymerase [Brucella ceti M490/95/1]
 gi|260919883|gb|EEX86536.1| error-prone DNA polymerase [Brucella ceti B1/94]
 gi|262551728|gb|EEZ07718.1| error-prone DNA polymerase [Brucella ceti M490/95/1]
          Length = 836

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/845 (26%), Positives = 375/845 (44%), Gaps = 56/845 (6%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +  +   S++S L GA     ++++  A     I I D N L   +    +        
Sbjct: 3   PYFEMAAASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQ-------- 54

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                 DI  +   ++    +  F    P +V+       Y +L  L++        K  
Sbjct: 55  ----WKDIRKESGFRLFIGCRLSFIDGTPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGE 110

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             +  + L     +  I +        D A           RL    +     +++ L  
Sbjct: 111 CHLEWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTM 160

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R  
Sbjct: 161 PHQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLL 220

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +LK   EMV +F D PEA+  T +     +F L       P           K 
Sbjct: 221 EKNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KT 276

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +  L +    G         I         +  ++ EL +IAR+++  YFL V D +  
Sbjct: 277 AQQHLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTH 331

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +R
Sbjct: 332 AREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHER 390

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EV++YV ++Y  +R A + T  + ++++A+RDVG+AL +       L   +       
Sbjct: 391 REEVMQYVYDRYSRDRAAIVATVINYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGG 450

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           +  Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+ 
Sbjct: 451 IDRQHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIG 506

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VDLSL 600
                     +++   I++ GL+K D L L  LT ++K+ D + Q   +      + L+ 
Sbjct: 507 PAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLAS 566

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
           +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 567 LPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMV 626

Query: 659 VVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             Y  R++G+E      P         +  +L +T+GV ++QEQ M+IA   + ++  EA
Sbjct: 627 HPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEA 686

Query: 711 DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
           + LRRAM   +    +   +++ I G    G  +T A N F  +  F +YGF +SHAA++
Sbjct: 687 NQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASF 746

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
           A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    +  
Sbjct: 747 AHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWNGT 806

Query: 830 VGDNR 834
           +   +
Sbjct: 807 IFWRK 811


>gi|300932918|ref|ZP_07148174.1| error-prone DNA polymerase [Corynebacterium resistens DSM 45100]
          Length = 1277

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/1188 (22%), Positives = 449/1188 (37%), Gaps = 232/1188 (19%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-------- 61
             F  L+ + +Y  L GA     ++ K A      +A  D + ++    F+          
Sbjct: 94   PFAELRTYHAYHFLHGADQPETMVAKAAELGITHLACLDRDGMYGTARFATAVAEHNAGL 153

Query: 62   ------------ACAAGIQPIIG--------------------------------CQLDI 77
                        A   G++                                     Q+  
Sbjct: 154  AIAAVQGDAERNAEEPGVRANSQQMSASERNAEEPGVRANDQKASVSGRNAAEGASQISP 213

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI-CLSWL 136
              Q       +          + +L    EGY+RL +L++   + D+ K +V    L  +
Sbjct: 214  GFQMRTVFGAELSLAEGDGHPLAILCRRQEGYRRLSQLITEAKMADRDKDTVNYPPLETI 273

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH-RGYDR 194
             E   +  ++L       ID  +          R     +LF  +   +  Q      D 
Sbjct: 274  AERAGDQWLIL-------IDHHWLN--------RADELVRLFGSENCVIQYQLTMDPADA 318

Query: 195  YRESQVVQLAYTH-ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRVTPDH 252
                Q+ + A  H  L  + +  +            V  A+     +   +     T   
Sbjct: 319  EWNEQLRRYAEHHPGLQEIVSAVATCAQPSSARLAGVKAALHEQRDLHAAEPTTHPTGGS 378

Query: 253  YLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            +L++R EM+ +  D   L  A++NTV +A +C+F L + AP LPR+           E +
Sbjct: 379  WLRSRDEMMQLAGDCDWLHAAIDNTVTLAEQCAFTLNLIAPNLPRYPVPTG----HTEMS 434

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQ-------------------------DYRQRLDFE 344
             L+     G   R  +    +   A+                            + +D E
Sbjct: 435  WLKALVEKGGAERYGRRPKKEECSAETNQQAGAVGLATGSAARKANTAANAKAWETIDRE 494

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L +I ++ F GYFLIV D + +   N+I    GRGS A S   +AL IT +D +   LLF
Sbjct: 495  LGIIEQLGFPGYFLIVYDIVNFCHTNDI-FCQGRGSAANSAVCFALGITTVDAVAAGLLF 553

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFL+P+R   PD D+D    RR+E I+YV  +YG +  AQ+    + + K ALRD  RA
Sbjct: 554  ERFLSPERDGPPDIDLDIESGRREEAIQYVYQRYGRDNAAQVANVITYRRKGALRDAARA 613

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L     QVD   + I              +                L  ++ +L    RH
Sbjct: 614  LGYAPGQVDAWTRGI-------------EEPPEL------------LQHVADQLRDHPRH 648

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               H+ G+VI DRP++ +VP       +  V Q++       GL+KFD LGL  L  +  
Sbjct: 649  LGIHSGGMVICDRPIADVVPTEWARMENRSVVQWDKDDCAAVGLVKFDLLGLGMLEAIHH 708

Query: 585  SLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++D +   RG +V+L  +   + E Y +L     +G+FQ+ES      L  ++P    D+
Sbjct: 709  AVDQVEKHRGRRVELWRLDPVETEVYAMLAKADAIGVFQVESRAQMNTLPRLKPRTFYDL 768

Query: 644  IALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +  V+L RPGPI       +  R+NG E +   HP ++P L  T GV ++QEQ+MQ+   
Sbjct: 769  VVQVALIRPGPIQGGSVHPFIRRRNGLEPVTFDHPSLEPALTRTLGVPLFQEQLMQVVVD 828

Query: 702  LSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADY 759
             +G++ +EAD LRRAM  K+    M   +ERF  G  + NGI+  +A  +++ +  FA Y
Sbjct: 829  AAGFTAAEADSLRRAMGSKRSPRRMAALRERFYDGLERTNGITGEVADRLWDKIVAFASY 888

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GF +SHA ++A + Y +AW K HYP EF  A +  +       +    DAR+  ++I+P 
Sbjct: 889  GFPESHAQSFASLVYYSAWFKYHYPAEFCVALLRAQPMGFYSPQSLIADARRHGVKILPV 948

Query: 820  SVNTPCVDFKVGDNRIYYSLAA------------------------------------IK 843
             +N   V+ +   +     L A                                    + 
Sbjct: 949  DINASGVEPETVIDVDAAGLLASASVGSPNRGVSPSADPASSFGSTPSASPEANRPQGVH 1008

Query: 844  GVGTTTAR---------------------HIMEASA-DKPFDSLEDFCSRVDSKKLNRRV 881
            G+G  TA                       I+ A   +  F ++ D   +     L  + 
Sbjct: 1009 GLGRGTAEPVGAIRLGLASVSGIGKDVATAIVRARENNGAFVTVSDLSRQA---GLTVKH 1065

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            +E L  AGAL+C G  R Q + +           E+       ++           + + 
Sbjct: 1066 VEQLARAGALECLGLDRRQAVWAAG-----VAATEREGMLPGSSL-----------VQVP 1109

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK------------------MGIKGY 983
                 N+      +    G    GHP+ + + +L +                    +   
Sbjct: 1110 SLPGMNAFELTAADLATTGITPDGHPVVLLRQLLEQWHELPIRTGIRAGQVRGGAPVVPA 1169

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
               +    G  IR+A +V  +Q+  T  G  + +    +         
Sbjct: 1170 NRLLDIPDGTRIRVAGVVTHRQRPATAGG--VVFFGIEDETGLANVMV 1215


>gi|162447106|ref|YP_001620238.1| DNA polymerase III subunit alpha [Acholeplasma laidlawii PG-8A]
 gi|161985213|gb|ABX80862.1| DNA polymerase III alpha subunit [Acholeplasma laidlawii PG-8A]
          Length = 982

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/1025 (30%), Positives = 493/1025 (48%), Gaps = 96/1025 (9%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L   SSYS+L+  L L  I      +    +AITD NNL    +    +    I  I+G 
Sbjct: 8    LYTQSSYSILKSTLHLETIFKHAKQENLDFVAITDDNNLHGLYKALVLSKKYQIPLILGF 67

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            Q                        +++     E  + LIEL S         ++  I  
Sbjct: 68   QKTF-------------KVLGYDLDLLIYAQNDEALKSLIELNSLTA------RTPDIPF 108

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                ++  + +I+L    S                  L           Y+ L     ++
Sbjct: 109  ESCVQLLNKLIIVLPSTQSFIYQHYEMSERIYEVISSL----HKSLKNFYLGLGNATDFE 164

Query: 194  RYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
              + + +++ +A   +L  + T    +  EE+   +D++  +  S   S      +    
Sbjct: 165  VDKITPILKKIALNEDLKYLPTYQQSYEDEENKTTYDIVNTIKDSQFKS------LNVSM 218

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +L +++E+V  +       +N   +  R ++    +   LP F  K+      E    L 
Sbjct: 219  HLLSKNELVKKYEQEKNIFKNVDAVFGRVNYTYLDNTQSLPVFPTKDN----VESHIYLY 274

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
              A  GLE RL    + K   + DY QRL+ EL VI +M +  YFLIV DF+++AK N+I
Sbjct: 275  ALAHKGLEKRLENSGVRK---STDYIQRLNEELEVIHQMGYDDYFLIVYDFVRFAKTNDI 331

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS+ AY L IT++DP+++ LLFERFLN DR SMPD D+DF   +RD VI 
Sbjct: 332  LVGPGRGSAAGSLVAYCLGITEVDPIQYDLLFERFLNIDRKSMPDIDLDFPDVKRDLVID 391

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YV+ KYG   V  + TF +L  K ++RD+ R + +   +++ +        +H    + I
Sbjct: 392  YVKEKYGLNHVVTMTTFTNLTTKTSMRDIARQMNLSQERINAI------IASHT---KGI 442

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
             D+        +D    +L++++  +EG+ R   TH AGI++  + L+ LVP+    + D
Sbjct: 443  LDE--------SDREAQKLVKVASTIEGIPRQTGTHPAGIILSKQDLTTLVPLMNGPK-D 493

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
            +  +Q     +E  G +K DFLGLK LT+++  L     +     LS +P DD +T+ LL
Sbjct: 494  IYQSQLEASDLESLGFLKIDFLGLKNLTMIEDILKLEQNKLK---LSDMPLDDKKTFELL 550

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +     G+FQLES GMR  +  ++P   EDI+AL++L+RPGP+  I  Y  R++G +   
Sbjct: 551  SNADVEGVFQLESQGMRNVIRKLRPSHFEDIVALLALFRPGPMQFIDDYIKRRHG-DTYE 609

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +   ID +LK T G+I+YQEQ+M+I Q+ +GY LSEAD++RRA+ KK ++ +D++K RF
Sbjct: 610  KLDSDIDEILKPTYGIIVYQEQIMKIFQVYAGYKLSEADIIRRAISKKNRDMIDREKARF 669

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I  + +       A  I+  + KFADYGFN+SH+ AYA I+Y  A++KTHY   F++  M
Sbjct: 670  IEKSVRLNRDAETAEKIYNHIEKFADYGFNRSHSVAYAFIAYYMAYLKTHYYASFISVLM 729

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +    N   +K+   DA+   + + PP++N   +DF    + I   L  IKG+G TTA+ 
Sbjct: 730  SQNTSNTAYLKELVLDAQNKGLVVYPPNINLSKLDFIPYKSGILAPLTMIKGIGLTTAKK 789

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            I+E    +PFDS + F  +V  K LN + +E L+ A ALD FG +  +LL          
Sbjct: 790  IVEL---QPFDSYDHFKEKV-FKVLNEKSIEILIHANALDVFGLNHKELLD--------- 836

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
                        N+       F D     +      +   E E  VLGF           
Sbjct: 837  ----------QNNLNQTGFEQFLDDYKKTRLEELPFNTLKEKEIEVLGFNL--------- 877

Query: 973  PILRKMGIKGYEESVAT----IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
              L+   +    E+       ++  +IR   M+ S +   T+KG  + ++TFS      +
Sbjct: 878  KYLKDEVLIRLNETHKLKPLSLKEQSIRTIGMIESVKIITTKKGDEMAFITFSNGI-SLD 936

Query: 1029 ANFFP 1033
               FP
Sbjct: 937  LTVFP 941


>gi|309812892|ref|ZP_07706624.1| DNA polymerase III, alpha subunit [Dermacoccus sp. Ellin185]
 gi|308433170|gb|EFP57070.1| DNA polymerase III, alpha subunit [Dermacoccus sp. Ellin185]
          Length = 1248

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/1132 (24%), Positives = 481/1132 (42%), Gaps = 128/1132 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL+V SSYSL  G      ++ + A      +A+TD + L+ +++F +   AAG++PI
Sbjct: 3    FTHLRVASSYSLQYGTTPPATLVARAAELGYGRLALTDRDGLYGSVKFVEACSAAGLEPI 62

Query: 71   IGCQLDIDMQDNLK---MTNQGKTPFPTVPSIVLLVSTAE-------GYQRLIELVSRMY 120
            +G  L +  +  L+       G       P + +L   A        G+ +L  LV+  +
Sbjct: 63   LGVDLALAPERVLRARTPAKGGPARDERSPRVTVLARGAASGLAPGLGWAQLCRLVTDAH 122

Query: 121  LLDQGK------QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L  +          V   ++   E     L +L G  S  + +A        AE  +  +
Sbjct: 123  LSGERGAPATSLDRVAAHVTHESEPNQPALTVLLGPDS-DVGQALLRGRHAEAEALVRRW 181

Query: 175  K-KLFGDRLYVNLQRHRGYD-----RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
            +  L    L + +  H G       R   + + +LA    +P V +        ++    
Sbjct: 182  RTALPHGALALEVACHDGPPEAMASRRHATNLWRLARRCGVPAVLSGWVRHGEVDEAITA 241

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS-------DLPEALE---NTVEIA 278
            DVL A      +  +   R +   +L+  ++M++          DL  ALE    +  +A
Sbjct: 242  DVLDAARRGVALDLRHLDRTSVQGHLRPEAQMLTQAEALAEGLGDLGAALELVGASDRLA 301

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
            + C          +      E + +     + +  L  +  A +  R    + AK     
Sbjct: 302  QAC-VQHPFRDIGIGAVHLPEVEVLGLTGTDPQRVLTERCHAAVNGRYPHASEAKRREVL 360

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            +  +      +V+  + +  YFL VA      +     V   RGSGAGS+  Y L I+ +
Sbjct: 361  ERLEEEL---DVVRHLGYPTYFLTVAQVCDLIRDMGGRVA-ARGSGAGSLITYLLGISGV 416

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DP+   LL ERF    R S+PD DID    RR E+   +  ++G ERV  +    + + +
Sbjct: 417  DPIEHRLLMERFCTRARASLPDIDIDVESARRTEIYERIMERFGGERVTCVSMMETYRVR 476

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A+RD G AL M  + VD + K  P+  A  V   AI +    R   LA+P +DRL ++ 
Sbjct: 477  HAIRDAGAALGMVPADVDVIAKAFPHVAARDVR-HAIEELPELRARGLAEPELDRLFDLV 535

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            ++L+GL RH + H  G+++ +  L+Q  PM        P++QF+   +E  GL+K D LG
Sbjct: 536  ERLDGLPRHIALHPCGVILSNAGLAQRTPME-ASWLGFPMSQFDKDDVETLGLLKLDVLG 594

Query: 576  LKTLTLLQKSLDFLAQRG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            ++  + +  ++  + +         D   +PFDD  T+ L+ T  TLG FQ+ES G R+ 
Sbjct: 595  IRMQSAMAHAVAEIERVEGAVVDLDDPECVPFDDEATFELIRTTRTLGCFQIESPGQREL 654

Query: 632  LEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
            +    P   ED+I  +SL+RPGP   D I  +   + G      +H  + P L+ET GV+
Sbjct: 655  IGKFGPQRFEDLIIDISLFRPGPVKSDMITPFLRARQGWAPPEYLHESLRPALEETMGVV 714

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            ++ EQV++I    +G +L++AD +RRAMG       +K +  +   A   G +      I
Sbjct: 715  VFHEQVLRIFAQTTGITLAQADEVRRAMG--SSTGQEKIELWWREAAQHRGYTSAERDRI 772

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +E+LA FA +GF K+HAAA+AV +YQ+AW+KTH+   F+A  +T +     K +    D 
Sbjct: 773  WEVLAAFASFGFCKAHAAAFAVPTYQSAWLKTHHLAAFVAGVLTHDPGMYPK-RLILADV 831

Query: 810  RQFNIQIMPPSVNTPCVDFKVG----------DNRIYYSLAAIKGVGTTTARHIMEASAD 859
            R F + ++   +N    +++V              +      +KG+       ++E    
Sbjct: 832  RTFGVPVLGVDINASRREYRVERVPGEGSDDDHLGLRIGFLDVKGMSEREMTSLVE---G 888

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS---------------------- 897
            +P+ SL D   R     L+R V+E L+  GA D    +                      
Sbjct: 889  QPYTSLTDVWRRA---GLSRPVVERLLLVGAFDALHGTGRPGVCGAPTRRDLLLELDDLE 945

Query: 898  --------------RMQLLQS----------------------LDNIQKYAQWVE-KNRT 920
                          R +++ S                      ++  ++ AQ      R 
Sbjct: 946  RLDRHASARLTRGARRRMISSAPGVGASVNADGAAGTVMAFDSVEAARRQAQGRRPHERY 1005

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                +  A +     + ++         + +   E  +LG   SGH +  Y P++R +G+
Sbjct: 1006 ETQGSQLAFDMLDDGEAVS-SGLPEFTPAEKVRAELDILGLDVSGHVMQFYAPLVRALGV 1064

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +  +   G  +  A + V+ Q    R G R+ ++T  +     +A FF
Sbjct: 1065 SRACDLASLHGGETVWCAGIKVATQTPPVRSGRRVIFLTVDDGTGPADATFF 1116


>gi|326774355|ref|ZP_08233620.1| DNA polymerase III, alpha subunit [Streptomyces cf. griseus
            XylebKG-1]
 gi|326654688|gb|EGE39534.1| DNA polymerase III, alpha subunit [Streptomyces cf. griseus
            XylebKG-1]
          Length = 1147

 Score =  655 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1063 (25%), Positives = 461/1063 (43%), Gaps = 74/1063 (6%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL V S YS   GA    +++ K A      +A+ D + +   + F+  A   GI+P+ 
Sbjct: 4    VHLHVSSGYSARYGASLPADLVRKAAERGVGTLALADRDTVAGTVRFAHAAVRTGIRPVF 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSI-------VLLVSTAEGYQRLIELVSRMYLLDQ 124
            G ++ +          + +TP      +        LL  T  G+ RL  +VS  +    
Sbjct: 64   GVEVAVAPYTPSGPAPRRRTPVRGGAHVVEARYRVTLLARTRAGWARLCRIVSAAHAA-P 122

Query: 125  GKQSVRICLSWLQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-----KLF 178
                  +    LQE    E L++L G  S P+ RA       VA + L  ++      L 
Sbjct: 123  VDGVPVVGWPVLQEYLAGEELVVLLGPVSEPV-RALSAGRPDVAGRLLEPWRVVAGAGLR 181

Query: 179  GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             + +++N Q          ++ +QL   H +P+V +N   + S + +   DVL A     
Sbjct: 182  LEAVWLNRQGTGPGSLRLAARTLQLGEQHTVPVVVSNAVRYASPDQHRLADVLDAARLLR 241

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA-----------RRCSFILQV 287
             +  +D      + +LK    M  I   + EA     E A             C      
Sbjct: 242  PIGPRDLD--GGERWLKGPEAMAGIAGRIAEAAGAGPERAAALLAETAATADSCRLDPAD 299

Query: 288  HAPILPRFIEKECDDIQK---EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                 P F E +         +    LR +  AG+  R   G    G  +    ++L++E
Sbjct: 300  LGMGRPHFPEPQAVGAGTGQGDAMRLLRQRCEAGMTAR---GLDRDGRAS----EQLEYE 352

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L VI R+ + GYFL VA  +   +   I V   RGSGAGS+  +AL I   +PL   LLF
Sbjct: 353  LGVIGRLGYEGYFLAVAQVVADVRAMGIRVA-ARGSGAGSMVNHALFIATANPLEHRLLF 411

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFL+  R S+PD D+D    RR EV   +  ++G  RVA      + +A+ ALRD G A
Sbjct: 412  ERFLSERRTSLPDIDLDVESARRLEVYDRIFERFGSSRVAVTGMPETYRARHALRDTGLA 471

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L MP  Q+  + K  P+  A  +   A+A+    R           L E+++ L+GL R 
Sbjct: 472  LGMPPQQIAGITKSFPHIRARDIR-SALAELPELRGLAARAGEFGPLWELAEGLDGLPRG 530

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW--IEKAGLIKFDFLGLKTLTLL 582
             + H  G+++ +  L   VP+        P+ Q +     +E  GL+K D LG++  + +
Sbjct: 531  YAMHPCGVILSNTTLLDRVPVQ-PTPGGYPMLQADKADVELEGYGLLKLDVLGVRMQSAM 589

Query: 583  QKSLDFLAQRGVKV----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
              ++  + +   +         +  +D +T+ L+    TL  FQ+ESSG    L  +QP 
Sbjct: 590  AHAVSEIRRTTGRQLDLDSPDHVDLNDQKTFELIRAADTLACFQIESSGQLDLLSRLQPR 649

Query: 639  CIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
             ++DIIA +SL+RPGP+   +   +   ++G       HP + P+L +T GV+I+ EQ++
Sbjct: 650  HLQDIIADISLFRPGPVAGGMPARFIAARHGGTP-HYPHPDLVPILDDTGGVVIWHEQII 708

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG-ISKTIAVNIFELLAK 755
             I   ++G   +  DV RRA+     + +   +  F   A+ +G  +  +   ++ ++ +
Sbjct: 709  AILARMTGCDRAAGDVARRALAA--PDRLPGVEAWFRQAATASGRYTPRVIDEVWAVIKE 766

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            F  YGF ++HA A+AV + Q+AW+K HYP    A ++  +       +    DAR+ ++ 
Sbjct: 767  FGAYGFCRAHAVAFAVPAVQSAWLKAHYPAALYAGALEHDPGLWPA-RVIAADARRHDVP 825

Query: 816  IMPPSVNTPCVDFKVGD----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            ++P  +NT    + V        +  SL+ + G+       I E    +P+ SL+DF +R
Sbjct: 826  VLPVDINTSKAQYAVERAGSGWGVRISLSTVHGISEGEVARIAE---GQPYTSLQDFYAR 882

Query: 872  VDSKKLNRRVLESLVFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
               K      +E L+  GALD      SR  LL     + + A             + + 
Sbjct: 883  AHPK---LPTVERLISVGALDQVKGEASRRDLLLQAAELHRQA---RTRPGTGQLTLASA 936

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
                 +  +         +  R + E  VL    S H L+ +  +LR++G    +   A 
Sbjct: 937  PYAAGASGLR-----EMTARDRLDAELGVLKIDVSRHLLEDHHRLLREIGATDAQHLGAM 991

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              G  + +A +  S Q      G RI +VT  + +   +  FF
Sbjct: 992  HPGQRVLVAGVRSSTQTPPIASGKRIIFVTLEDGSGLVDLAFF 1034


>gi|308447379|ref|XP_003087417.1| hypothetical protein CRE_07974 [Caenorhabditis remanei]
 gi|308256652|gb|EFP00605.1| hypothetical protein CRE_07974 [Caenorhabditis remanei]
          Length = 699

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/711 (40%), Positives = 410/711 (57%), Gaps = 31/711 (4%)

Query: 99  IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
           + +L  T EG   L  L S   +        R+    LQ  G +GLI  TG  SG I   
Sbjct: 1   MTMLSETTEGMHNLFRLSSYASMQG-YYFKPRMDRELLQTYG-KGLITTTGCPSGEIQTR 58

Query: 159 FFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNN 216
                   A +    F+ +F  +  +  L  H    +R  +S ++++A   ++PLVATN+
Sbjct: 59  LRLGQYDEARQAAAEFQDIFGRENFFCELMDHGLDIERRVQSDLIKIARDLKIPLVATND 118

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTV 275
             ++ E D EAH  L+ V   + +   +R +     +YLK  +EM  IF D P+A +NT+
Sbjct: 119 LHYVHEADAEAHSALLCVQSGSRLDDPNRFKFDGSGYYLKTAAEMRHIFRDFPDACDNTL 178

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
            IA RC+      A  +PR+   + +     E++    +   GL  R   G         
Sbjct: 179 LIAERCNVEFNTSANYMPRYPVPDGE----TEDSWFIKEVEKGLHYRYPSGI------PD 228

Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
             R++ ++E+ VI +M F GYFL+VADFI W+K N I VGPGRGSGAGS+ AYA+ ITD+
Sbjct: 229 SVRKQAEYEIGVITQMGFPGYFLVVADFINWSKDNGIRVGPGRGSGAGSMVAYAMRITDL 288

Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
           DPL+  L+FERFLNPDR+SMPDFD+DF   RR EVI YV  KYG ERVAQI+T+G++++K
Sbjct: 289 DPLQHGLIFERFLNPDRVSMPDFDVDFDDRRRGEVIMYVTEKYGDERVAQIVTYGTIKSK 348

Query: 456 AALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADP 506
            AL+D  R L  P+   ++L K +P    A  + L  I D           FR     DP
Sbjct: 349 QALKDASRVLCFPFGMGEKLTKAMPPAVMAKDIPLSGITDPEHPRYKEAAEFRAVLTEDP 408

Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
               + + +  LEGL R    HAAG+++   PL  ++P+ +  +    VTQF+    E  
Sbjct: 409 EAKLVYDTALGLEGLKRQWGVHAAGVIMSSDPLIDIIPLQKREQDGQIVTQFDYPTCEGL 468

Query: 567 GLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
           GLIK DFLGL+ LT++  +L+ +   RG ++DL  +  DD  +Y LL    TLG+FQL+ 
Sbjct: 469 GLIKMDFLGLRNLTIISDALENIRLNRGEELDLERLELDDAPSYELLARGDTLGVFQLDG 528

Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP--- 680
             MR  L  M+PD  EDI A+++LYRPGP+  D+   Y  RKNG + I  IHP ++    
Sbjct: 529 GPMRGLLRLMKPDNFEDISAVLALYRPGPMGADSHTNYALRKNGLQPITPIHPELEEPLK 588

Query: 681 -MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
            +L+ T G+IIYQEQVM IAQ ++G+SL +AD+LRRAMGKK K E+DKQ E F  G  + 
Sbjct: 589 DILETTYGLIIYQEQVMSIAQRVAGFSLGQADILRRAMGKKKKSELDKQYEGFSGGMKER 648

Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
           G S+     ++++L  F+DY FNK+H+AAY V+SY TA++K HYP E++AA
Sbjct: 649 GFSEAAIKALWDILLPFSDYAFNKAHSAAYGVVSYWTAYLKEHYPAEYMAA 699


>gi|15894506|ref|NP_347855.1| DNA polymerase III Alpha chain (dnaE) [Clostridium acetobutylicum
            ATCC 824]
 gi|15024147|gb|AAK79195.1|AE007635_9 DNA Polymerase III Alpha chain (dnaE) [Clostridium acetobutylicum
            ATCC 824]
 gi|325508637|gb|ADZ20273.1| DNA Polymerase III Alpha chain (dnaE) [Clostridium acetobutylicum EA
            2018]
          Length = 1112

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/1096 (25%), Positives = 493/1096 (44%), Gaps = 112/1096 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L  H  YSLL+       I+ K       AIAIT+  N+FS + F ++    G++ 
Sbjct: 2    SYAELHCHDCYSLLDAISKPEEIISKAKEYGYSAIAITNHGNMFSMVNFQKEGEKQGVKT 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +        +K          T   ++LL    EG + L EL S  YL     +  
Sbjct: 62   ILGIEAYEADNLRIK--------DDTRYHLILLAKNNEGLKALYELSSISYLEG-FYKKP 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+ +  ++    + LI+ +   +G IDR    +    A++ +  +KK+F    Y+ +Q H
Sbjct: 113  RLDIKEIEPYA-KDLIISSACMAGRIDRLLLADKYNEAKEWIYKYKKVFP-NFYLEMQHH 170

Query: 190  RGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++   ++++ +L      P + T++S ++++ED +AH + +       V +     +
Sbjct: 171  DVIEQANLNKLIVRLGKETGTPYIMTSDSHYINKEDQKAHSIFIQTNEKREVGE-----I 225

Query: 249  TPDHYLKNRSEMVSIF------SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                YLK+  E+  I        D+  A+ NT +IA+ C+  + +  P   +  E     
Sbjct: 226  YDGCYLKSEKEIKEIMMKQIDKDDIELAISNTEKIAKECNVKIDLSLP--NQMPEIPIPK 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              K            G + +            + + +R+  E  V+  + +  YF+++  
Sbjct: 284  EFKNINQYYMYLINKGFKEKKLNKLPKNEL--KKHIERIKSEYEVLDYVHYIDYFVMLYM 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
              + AKK NIP+G  RGSG   +T + + +T I+ LR++L F RF +  R S+ D+D+D 
Sbjct: 342  LTKAAKKRNIPLGFSRGSGGNCLTLFDMGVTGINSLRYNLDFSRFASKGRTSLADYDMDM 401

Query: 423  CQDRRDEVIRYVQNKYG------HERVAQIITFGSLQAKAALRDVGRALQ-------MPY 469
             + RR E+I   +  +       H +VA I TF S   K A RD+G+ALQ       + Y
Sbjct: 402  SKRRRKEIIDISKELFNKYEDILHTQVAPICTFNSFSTKVACRDIGKALQVNNTYPDLTY 461

Query: 470  SQVDRLCKLIPN-DPAHPVSLQAIADDSRFREARLADPSVDR-------LLEISQKLEGL 521
               D + K+IP        + +AI +D + +    ++  +           +   KLEGL
Sbjct: 462  QVRDIVAKMIPKVTRYDEETGEAIEEDQQLKSIIDSNEKLQTYAKKYPLWFKYIIKLEGL 521

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK-WIEKAGLIKFDFLGLKTLT 580
             +    HA+G+VI  +P+    P+  + +   P+ Q  M   ++   L+K DFLGLKTL 
Sbjct: 522  PKSLGCHASGVVISPKPIIDYAPLCLN-KDKQPMIQLEMHNVLDDLHLVKMDFLGLKTLD 580

Query: 581  LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-TTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  +L         +D++ I  +D + Y  +     T+G+FQ+ES+  RQ     Q D 
Sbjct: 581  VIDDALKLAKLTYDDIDINKINLNDPKVYKNIYKKGNTIGVFQMESAEARQMNIDAQTDN 640

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            IED+IAL +L RP        +   K   E +  IH  +  +L+ T GV++YQEQ + I 
Sbjct: 641  IEDVIALNALNRPACKAMFPDFVENKQHPENMKLIHEDLRSILQSTYGVLLYQEQSLSIF 700

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKER--------------FISGASKNGISKTI 745
            + L+ +  SE D+ RRA+GKK  E M   +E+              +  G  + G +   
Sbjct: 701  R-LANFPDSEVDLARRAIGKKDMEIMKSLEEKLRDKVVKDEDGHILWHYGLKQRGWADKQ 759

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
              +I++LL K A Y FNK H+ AY ++SY TAW+KT+YP EF+ A +  E+ + EKI K+
Sbjct: 760  IEDIWKLLLKQATYSFNKGHSTAYGLLSYITAWLKTYYPTEFMTALLNSEIGDYEKIAKY 819

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
              + ++ N++++ P +N     F +  + I + +  IK VG +    I+    ++P+ S 
Sbjct: 820  IIECKKMNVKVIEPDINKSIDFFSISKSSILFGINMIKNVGDSVIPDIIN---NRPYQSF 876

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL------DNIQKYAQWVEKNR 919
             DF +R +   + +R   +L+ +GA + F   +  LL           + K  + ++  +
Sbjct: 877  NDFITRCN---IGKRATIALIKSGAFNEFNKDKSTLLYEYCKSAYTPTVYKPVKNLKTKK 933

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVEN-------SSVRFEN------EQ---------- 956
                  +   E       + L + +  N          R+E       E+          
Sbjct: 934  QMFELGLVEDEITWKDKDLCLARLNAYNKNKYIKKEKERYEKCYKEFEEKYMQGSIEDWQ 993

Query: 957  -RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
               L  Y +  P    + IL+        + +    G    +A  + + + K  +K ++ 
Sbjct: 994  FETLSMYLTVDPFKELRKILKPF------DDMGEGIG---LIAGTIFAIENKVDKKNNKY 1044

Query: 1016 GWVTFSE-PAKEYEAN 1030
             +V+     +K  EA 
Sbjct: 1045 AFVSLINQESKIIEAV 1060


>gi|255521289|ref|ZP_05388526.1| DNA polymerase III (alpha subunit) DnaE [Listeria monocytogenes FSL
           J1-175]
          Length = 694

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/724 (37%), Positives = 417/724 (57%), Gaps = 36/724 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+P
Sbjct: 2   GFVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIG            +T QG         ++L+  +  GY  L+++ S +   ++G    
Sbjct: 62  IIGMT----------VTIQGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---P 108

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            +  SWL+   +  LI ++ G+ G I+R     + + A +      ++F  + +Y++ Q+
Sbjct: 109 ELPQSWLRAYSSN-LIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQK 167

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P  
Sbjct: 168 ---ENPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLA 224

Query: 249 TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            P+ Y  ++ EM   +       A   T E+A RC   + +   +LPRF   E     + 
Sbjct: 225 GPN-YFTSQEEMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNEG----QN 279

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + LR  A AGL+ R   GA        +Y++RL++EL VI  M F+ YFLIV D I++
Sbjct: 280 ASDVLRQTAFAGLKERNLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRY 331

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           +++  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +R
Sbjct: 332 SREAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNR 391

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           RDEVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     
Sbjct: 392 RDEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGIT 451

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           +  +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V + 
Sbjct: 452 LQ-KALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D
Sbjct: 511 LGS-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
            +T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK
Sbjct: 570 KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629

Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
           +GKEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +
Sbjct: 630 HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689

Query: 726 DKQK 729
           ++++
Sbjct: 690 NEER 693


>gi|300812161|ref|ZP_07092605.1| DNA polymerase III, alpha subunit [Lactobacillus delbrueckii subsp.
            bulgaricus PB2003/044-T3-4]
 gi|300496846|gb|EFK31924.1| DNA polymerase III, alpha subunit [Lactobacillus delbrueckii subsp.
            bulgaricus PB2003/044-T3-4]
          Length = 1164

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/1036 (29%), Positives = 481/1036 (46%), Gaps = 62/1036 (5%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  S+ ++L   +   +++         A+A+TD N  F   +F Q+A  AGI+P++G 
Sbjct: 6    LQTISANTILASPMKTADLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLGL 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            Q             +G         +V L  + +GYQ L+ L S + +           L
Sbjct: 66   QGRF----------KGVELEEAEYDLVFLAQSQKGYQSLMRLSSFLNIASGDLAGPAPSL 115

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
            S L E+    +I+  G +S         NS +   K+L  F       LY+ +       
Sbjct: 116  SDLPELSDLTVIVPAGLTSELRQLNKLRNSGEEYVKKLQAFLPKGLP-LYLGVYPAESA- 173

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD---RPRVTP 250
               ++ V +LA    LP+    +  +L   D     VL A+    V+ + +         
Sbjct: 174  AAYDAYVKKLAEISALPITVVEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAEGQG 233

Query: 251  DHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             H+L+    +     +  L EAL N+ +IA  C   +    P LP F +          +
Sbjct: 234  SHWLRPAPVLEDACREMGLEEALANSGKIAASCHAKIPFKEPQLPVFPQATG----LSSD 289

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L   A AGLE          G     Y  RL  EL VI +M F+ YFLIV D + + +
Sbjct: 290  QYLEKLAFAGLEKL--------GLRQGIYHARLQKELAVIQQMGFADYFLIVGDIVNYCR 341

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +    VGPGRGS AGS+ AYAL IT IDPL++ LLFERFLNP R  MPD D+DF    R 
Sbjct: 342  QRGALVGPGRGSAAGSLVAYALGITQIDPLKYDLLFERFLNPARADMPDIDLDFTTSGRK 401

Query: 429  EVIRYVQNKYGH--------ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
                YVQ KYG         + VA+I+   +++AK+ L   G+   +    + RL + + 
Sbjct: 402  LAFAYVQEKYGAKARFGEGSDLVARILALTTMKAKSVLERTGQVFGLTLPAIARLKQAM- 460

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                   +L      + F+    A P    L + + +LEGL     THA G+VI + PLS
Sbjct: 461  ---GAAKTLAEAGQQTEFKALVAASPLTRLLYQTAARLEGLPEDTGTHAPGLVISEEPLS 517

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            + + +     + L   +   K++EK GL+K DFL L  L LL+  L  + +    +DL+ 
Sbjct: 518  RQIGLMTGKEAPLWTVEQTKKYVEKYGLLKIDFLTLDNLELLEGVLAEIQKSSGPLDLTR 577

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD +T  L     T  IFQ  SSGM++ L  +QP   +D+   V+LYRPGPI +I +
Sbjct: 578  LPLDDPDTLRLFARGETQQIFQFNSSGMQEVLRKIQPRTFDDLSVAVALYRPGPIASIPL 637

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  RKNG   +    P +  +L  T G+ +YQEQVMQ A++ +G+SL+EADV R A+ KK
Sbjct: 638  YVARKNGTSPVQYPDPSLKEVLGPTYGIFVYQEQVMQTARIFAGFSLAEADVFRNAISKK 697

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                + ++K +F++GA + G S+  A  ++ L+  FA+YGFN SHA AYA+++Y  A++ 
Sbjct: 698  QAGLLAEEKGKFVAGAVRKGHSRQAAEAVYALIEPFANYGFNHSHAVAYALLAYWQAFLS 757

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             H+P EF    +       +      + AR+  ++I+ P +N    + ++ + RIY  L 
Sbjct: 758  VHFPREFYLEKLRASRGKEK--GAIIRQARKAGVEILGPDINLSQAEARLFEGRIYLGLK 815

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             I G+       ++     +P  S   F  ++D+K+L  + L  L+ AG  D    +R  
Sbjct: 816  DIMGITPAFLDQLLA--LKRPVTSFPAFLRQLDTKELKEKQLVPLIEAGLFDQVSPNRAS 873

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL +  N+   A+  +K+     + + A E          E   +   + +   E+R +G
Sbjct: 874  LLVNCGNMLNTARLSQKSLVL-QDFLAAKE----------ENVPMPTPAEKVAMEERAMG 922

Query: 961  FYFSGHPLDVYKPIL-RKMGIKGYEESVATIRGNNIRLAAMVVS---KQQKKTRKGSRIG 1016
            F  +  PL++    L ++ G K +        G    LA  +     + ++  R G    
Sbjct: 923  FAVTASPLEIAGKALAKRYGAKPFAGLALNETGQ--VLAQFIKKNDWRVKRGARAGELGS 980

Query: 1017 WVTFSEPAKEYEANFF 1032
               FS+     +   F
Sbjct: 981  NAVFSDGQTSEKVTIF 996


>gi|325125570|gb|ADY84900.1| DNA polymerase III alpha-chain [Lactobacillus delbrueckii subsp.
            bulgaricus 2038]
          Length = 1164

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/1036 (29%), Positives = 485/1036 (46%), Gaps = 62/1036 (5%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  S+ ++L   +  ++++         A+A+TD N  F   +F Q+A  AGI+P++G 
Sbjct: 6    LQTISANTILASPMKTDDLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLGL 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            Q             +G         +V L  + +GY+ L+ L S + +           L
Sbjct: 66   QGRF----------KGIELEEAEYDLVFLAQSQKGYKSLMRLSSFLNIASGDLAGPAPSL 115

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
            + L E+    +I+  G +S         NS +   K+L  F       LY+ +       
Sbjct: 116  ADLPELSDLTVIVPAGLTSELRQLNKLRNSGEEYVKKLQAFLPKGLP-LYLGVYPAESA- 173

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD---RPRVTP 250
               ++ V +LA    LP+    +  +L   D     VL A+    V+ + +     +   
Sbjct: 174  AAYDAYVKKLAEISALPITVVEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAQGQG 233

Query: 251  DHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             H+L+    +     +  L EAL N+ +IA  C   +    P LP F +          +
Sbjct: 234  SHWLRPAPVLEDACREMGLEEALANSGKIAASCQAKIPFKEPQLPVFPQATG----LSSD 289

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L   A AGLE          G     Y  RL  EL VI +M F+ YFLIV D + + +
Sbjct: 290  QYLEKLAFAGLEKL--------GLRQGIYHARLQKELAVIQQMGFADYFLIVGDIVNYCR 341

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +    VGPGRGS AGS+ AYAL IT IDPL++ LLFERFLNP R  MPD D+DF    R 
Sbjct: 342  QKGALVGPGRGSAAGSLVAYALGITQIDPLKYDLLFERFLNPARADMPDIDLDFTTSGRK 401

Query: 429  EVIRYVQNKYGH--------ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
                YVQ KYG         + VA+I+   +++AK+ L   G+   +    + RL + + 
Sbjct: 402  LAFAYVQEKYGAKARFGEGSDLVARILALTTMKAKSVLERTGQVFGLTLPAIARLKQAM- 460

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                   +L      + F+    A P    L + + +LEGL     THA G+VI + PLS
Sbjct: 461  ---GAAKTLAEAGQQAEFKALVAASPLTRLLYQTAARLEGLPEDTGTHAPGLVISEEPLS 517

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            + + +     + L   +   K++EK GL+K DFL L  L LL+  L  + +    +DL+ 
Sbjct: 518  RQIGLMTGKEAPLWTVEQTKKYVEKYGLLKIDFLTLDNLELLEGVLAEIQKSSGPLDLTR 577

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD +T  L     T  IFQ  SSGM++ L  +QP   +D+   V+LYRPGPI +I +
Sbjct: 578  LPLDDPDTLRLFARGETQQIFQFNSSGMQEVLRKIQPRTFDDLSVAVALYRPGPIASIPL 637

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  RKNG   +    P +  +L  T G+ +YQEQVMQ A++ +G+SL+EAD+ R A+ KK
Sbjct: 638  YVARKNGTSPVQYPDPSLKEVLGPTYGIFVYQEQVMQTARIFAGFSLAEADIFRNAISKK 697

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                + ++K++F++GA + G S+  A  ++ L+  FA+YGFN SHA AYA+++Y  A++ 
Sbjct: 698  QAGLLAEEKDKFVAGAVRKGHSRQAAEAVYALIEPFANYGFNHSHAVAYALLAYWQAFLS 757

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             H+P EF    +       +      + AR+  ++I+ P +N    + ++ + RIY  L 
Sbjct: 758  VHFPREFYLEKLRASRGKEK--GAIIRQARKAGVEILGPDINLSRAEARLFEGRIYLGLK 815

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             I G+       ++     +P  S   F  ++D+K+L  + L  L+ AG  D    +R  
Sbjct: 816  DIMGITPAFLDQLLA--LKRPVTSFTAFLRQLDTKELKEKQLVPLIEAGLFDQVSPNRAS 873

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL +  N+   A+  +K+     + + A E          E   +  ++ +   E+R +G
Sbjct: 874  LLVNCGNMLNTARLSQKSLVL-QDFLAAKE----------ENVPMPTAAEKVAMEERAMG 922

Query: 961  FYFSGHPLDVYKPIL-RKMGIKGYEESVATIRGNNIRLAAMVVS---KQQKKTRKGSRIG 1016
            F  +  PL++    L ++ G K +        G    LA  +     + ++  R G    
Sbjct: 923  FAVTASPLEIAGKALAKRYGAKPFAGLALNETGQ--VLAQFIKKNDWRVKRGARAGELGS 980

Query: 1017 WVTFSEPAKEYEANFF 1032
               FS+     +   F
Sbjct: 981  NAVFSDGQTSEKVTIF 996


>gi|38233219|ref|NP_938986.1| error-prone DNA polymerase [Corynebacterium diphtheriae NCTC 13129]
 gi|71151822|sp|Q6NJ04|DNAE2_CORDI RecName: Full=Error-prone DNA polymerase
 gi|38199478|emb|CAE49129.1| Putative DNA polymerase [Corynebacterium diphtheriae]
          Length = 1039

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/1035 (26%), Positives = 445/1035 (42%), Gaps = 101/1035 (9%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +Y    P F  L   S Y  L GA S  +++         A+A+ D +  + A+EF++ A
Sbjct: 46   RYYSSQP-FAELHAASYYHFLHGANSPQDMVAAACQQGMSALALIDRDGFYGAMEFAEAA 104

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              +G+  + G +L +                     + +L    EGY  L  L+++  + 
Sbjct: 105  ATSGLPTVFGAELTLAPD----------------RILTVLARGVEGYTSLSRLITQARMR 148

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                 ++   L+ + E            S G   R    +S    E  L  F   + D +
Sbjct: 149  GSKDVTIYPPLAEIVE------------SMGKNCRFLLNHSWCTDESLLEIF---YPDTV 193

Query: 183  YVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
             +        +     +++  +   +    +A+     +            A+A    + 
Sbjct: 194  VLEYGVTMRPEDVDHHELLDSIRQRYGFMAIASAVPSAVDRVSARVAGAKQALAQRESLP 253

Query: 242  QKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            Q   R       +++   E+    S   + L+ +VE+AR C+F L + AP LPR+     
Sbjct: 254  QATPRLHPMGSTWMRGGDELAG--SVDKQLLDASVEVARDCAFALDLVAPNLPRWPVP-- 309

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                 +E   L     A  + R    +      A   R ++  EL VI  + F GYFLIV
Sbjct: 310  -----DEMAHLTGLVNARFDARYRGRSEDVKNQA---RAQIHHELAVIKELGFPGYFLIV 361

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +   NNI +  GRGS A SV  + L IT+++P+   LLFERFL+ DR   PD DI
Sbjct: 362  DDIVSFCHTNNI-LCQGRGSAANSVVCFVLGITNVEPISTGLLFERFLSRDREGPPDIDI 420

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D    RRD VI YV + YG +  AQ+    + + KAALRD  RAL  P +  D       
Sbjct: 421  DIESGRRDAVITYVYDTYGRDNAAQVANVITYRTKAALRDAARALGYPNTSADAWS---- 476

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                                    D + + +  ++++L+G  RH   HA G+VI DRP++
Sbjct: 477  ---------------------TNPDEAPNAVRFLAEQLKGQPRHLGIHAGGMVICDRPIA 515

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
             +VP     +    V Q++ +    AGL+KFD LGL  L  L   +D + +     ++L 
Sbjct: 516  DVVPTEWARKHGRSVVQWDKESCASAGLVKFDLLGLGMLEALHHMIDLVVETTGTTINLW 575

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
             I   + E Y +L+    +G+FQ+ES      L  ++P    D++  V+L RPGPI    
Sbjct: 576  EIDLAEPEIYTMLSNGDAVGVFQVESRAQLATLPRLRPREFFDLVVEVALVRPGPIQGGS 635

Query: 659  -VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
               Y  R+NG E +   HP+++  L++T GV ++QEQ+M IA   +G+S  EAD LRRAM
Sbjct: 636  VHPYIRRRNGLEAVTYEHPILERSLRKTLGVPLFQEQLMHIAVDAAGFSGGEADELRRAM 695

Query: 718  GKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            G +   + M++ K RF +G  +N I+  IA  ++  +  F  YGF +SH+ ++A + Y +
Sbjct: 696  GSRRSVDTMNRMKRRFFAGLRRNNITGDIAGILWNKIVAFVAYGFPESHSQSFASLVYFS 755

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            AW K H+P EF    +  +       +    DAR+  + I+  ++N   V+  V +  I 
Sbjct: 756  AWFKYHHPAEFYVGLLRAQPMGFYSPQSLLADARRKELTILSHNINKSQVEATVENGAIR 815

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  IKGVG T A  I+   A  P+  + D   R     L   V+E+L  +GAL+  G 
Sbjct: 816  LGLNMIKGVGKTEAEAIV---AHAPYRDIADLSRRA---GLGVAVIEALARSGALETLGV 869

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R Q L                 T K   +           ++       N+      + 
Sbjct: 870  GRRQALW----------QAGAAATEKAAMLPGLS------MVSAPSLPGMNAFELIVADI 913

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             + G   S +P+ + +  L   G+    E +       I LA +V  +Q+ +T  G  + 
Sbjct: 914  AMTGVS-SENPVALLRRQLELRGVIPASELLNCENARRILLAGVVTHRQRPQTAAG--VT 970

Query: 1017 WVTFSEPAKEYEANF 1031
            ++   +         
Sbjct: 971  FLGLEDETGLANVVV 985


>gi|315111549|ref|YP_812810.2| DNA polymerase III, alpha subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 1164

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/994 (29%), Positives = 470/994 (47%), Gaps = 57/994 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ  S+ ++L   +   +++         A+A+TD N  F   +F Q+A  AGI+P++G 
Sbjct: 6   LQTISANTILASPMKTADLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLGL 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           Q             +G         +V L  + +GY+ L+ L S + +           L
Sbjct: 66  QGRF----------KGIELEEAEYDLVFLAQSQKGYKSLMRLSSFLNIASGDLAGPAPSL 115

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
           + L E+    +I+  G +S         NS +   K+L  F       LY+ +       
Sbjct: 116 ADLPELSDLTVIVPAGLTSELRQLNKLRNSGEEYVKKLQAFLPKGLP-LYLGVYPAESA- 173

Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD---RPRVTP 250
              ++ V +LA    LP+    +  +L   D     VL A+    V+ + +         
Sbjct: 174 AAYDAYVKKLAEISSLPITVVEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAEGQG 233

Query: 251 DHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            H+L+    +     +  L EAL N+ +IA  C   +    P LP F +          +
Sbjct: 234 SHWLRPAPVLEDACREMGLEEALANSGKIAASCQAKIPFEEPQLPVFPQATG----LSSD 289

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             L   A AGLE          G     Y  RL  EL VI +M F+ YFLIV D + + +
Sbjct: 290 QYLEKLAFAGLEKL--------GLRQGIYHARLQKELAVIQQMGFADYFLIVGDIVNYCR 341

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
           +    VGPGRGS AGS+ AYAL IT IDPL++ LLFERFLNP R  MPD D+DF    R 
Sbjct: 342 QKGALVGPGRGSAAGSLVAYALGITQIDPLKYDLLFERFLNPARADMPDIDLDFTTSGRK 401

Query: 429 EVIRYVQNKYGH--------ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
               YVQ KYG         + VA+I+   +++AK+ L   G+   +    + RL + + 
Sbjct: 402 LAFAYVQEKYGAKARFGEGSDLVARILALTTMKAKSVLERTGQVFGLTLPAIARLKQAM- 460

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  +L      + F+    A P    L + + +LEGL     THA G+VI + PLS
Sbjct: 461 ---GAAKTLAEAGQQAEFKALVAASPLTRLLYQTAARLEGLPEDTGTHAPGLVISEEPLS 517

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
           + + +     + L   +   K++EK GL+K DFL L  L LL+  L  + +    +DL+ 
Sbjct: 518 RQIGLMTGKEAPLWTVEQTKKYVEKYGLLKIDFLTLDNLELLEGVLAEIQKSSGPLDLTR 577

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
           +P DD +T  L     T  IFQ  SSGM++ L  +QP   +D+   V+LYRPGPI +I +
Sbjct: 578 LPLDDPDTLRLFARGETQQIFQFNSSGMQEVLRKIQPRTFDDLSVAVALYRPGPIASIPL 637

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
           Y  RKNG   +    P +  +L  T G+ +YQEQVMQ A++ +G+SL+EAD+ R A+ KK
Sbjct: 638 YVARKNGTSPVQYPDPSLKEVLGPTYGIFVYQEQVMQTARIFAGFSLAEADIFRNAISKK 697

Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               + ++K++F++GA + G S+  A  ++ L+  FA+YGFN SHA AYA+++Y  A++ 
Sbjct: 698 QAGLLAEEKDKFVAGAVRKGHSRQAAEAVYALIEPFANYGFNHSHAVAYALLAYWQAFLS 757

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
            H+P EF    +       +      + AR+  ++I+ P +N    + ++ + RIY  L 
Sbjct: 758 VHFPREFYLEKLRASRGKEK--GAIIRQARKAGVEILGPDINLSRAEARLFEGRIYLGLK 815

Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            I G+       ++     +P  S   F  ++D+K+L  + L  L+ AG  D    +R  
Sbjct: 816 DIMGITPAFLDQLLA--LKRPVTSFTAFLRQLDTKELKEKQLVPLIEAGLFDQVSPNRAS 873

Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
           LL +  N+   A+  +K+     + + A E          E   +  ++ +   E+R +G
Sbjct: 874 LLVNCGNMLNTARLSQKSLVL-QDFLAAKE----------ENVPMPTAAEKVAMEERAMG 922

Query: 961 FYFSGHPLDVYKPIL-RKMGIKGYEESVATIRGN 993
           F  +  PL++    L ++ G K +        G 
Sbjct: 923 FAVTASPLEIAGKALAKRYGAKPFAGLALNETGQ 956


>gi|239994182|ref|ZP_04714706.1| putative DNA polymerase III alpha chain [Alteromonas macleodii ATCC
            27126]
          Length = 918

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/885 (26%), Positives = 401/885 (45%), Gaps = 52/885 (5%)

Query: 162  NSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
                  +      +K      Y+  QR   G D +R +    L   +  P++A    L  
Sbjct: 16   GKEAKDKHWAEWLQKHPSIDAYIGAQRLLDGRDHHRFAHYNHLQSAYPFPVIACTGVLMH 75

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
              +      VL A+   T V +  R  ++  +  L+   ++  ++ +  + + NT  +A 
Sbjct: 76   HADRLPLQHVLHAINVHTSVDKIGRDALSNAERSLRTVQKIKKLYPE--KWIANTNALAH 133

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
              +F L+      P  +  E         + LR +  AG++VR  +G         D RQ
Sbjct: 134  AFTFSLEELRYHYPAELVPEG----YTPTSYLRERVEAGIKVRFPEGI------TPDIRQ 183

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
             ++ EL +I   ++  +FL + D +Q+AK+  I    GRGS A SV  Y L IT +DP +
Sbjct: 184  TIEKELTLIDEQEYEYFFLTIYDIVQFAKRQRILY-QGRGSAANSVVCYCLEITAVDPRQ 242

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
             S+LFERF++ +R   PD D+DF   RR+EVI+Y+  KYG ER A   T    + K+A +
Sbjct: 243  ISVLFERFISKERNEPPDIDVDFEHQRREEVIQYIYQKYGRERTAIAATVICYRFKSAFK 302

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA--DPSVDRLLEISQK 517
            DVG+AL    SQ+D + K I    +       I   S+     L   +P V +L+ +++ 
Sbjct: 303  DVGKALGFSESQLDFVVKQINRRDSV------IPWKSQLAGLGLNPKEPRVQQLITLTEA 356

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            L G  RH S H  G VI   PL  LVP+      +  + Q++   IE  GL+K D L L 
Sbjct: 357  LLGTPRHLSQHVGGFVISAGPLYDLVPVENAAMEERTIIQWDKDDIETLGLLKVDVLALG 416

Query: 578  TLTLLQKSLDFLAQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
             L+ ++++   + ++              DD + + ++    T+G+FQ+ES      L  
Sbjct: 417  MLSAIRRAFSLINKQYPVETSIPFITKLGDDKQVFDMICRADTVGVFQIESRAQMSMLPR 476

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            ++P    D++  +++ RPGPI  D +  Y  R++G E I      ++ +L  T GV I+Q
Sbjct: 477  LKPRRYYDLVVQIAIVRPGPIQGDMVHPYLIRRHGNETISYPSKDVEKVLSRTMGVPIFQ 536

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            EQV+Q+A + +G+S  EAD LRRAM   K    + + +++ I G +  G   T A N+FE
Sbjct: 537  EQVIQLAMVAAGFSGGEADQLRRAMASWKKDGRIFEFRDKLIKGMTDKGYDSTFAHNLFE 596

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  FA YGF +SH+A++AV++Y + W+K ++PVEF  A +           +  QDA++
Sbjct: 597  QIKGFAGYGFPESHSASFAVLAYVSCWLKFYFPVEFYVALLNSWPMGFYSPSQLVQDAKR 656

Query: 812  FNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
             +I++  P VN   V+  +        I   L  IKG+   +++ I+E  +DK + ++E 
Sbjct: 657  HHIRVEAPCVNQSDVEHSLVVQGQEKYIQLGLKLIKGLSEASSQLIVENRSDKGYTNVEQ 716

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
                     L    LE+L  A AL     +R +    + +            T     +F
Sbjct: 717  LQQL----SLKSNELEALASADALRTISGNRYETRWRIMD------------TQTRLPLF 760

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                  ++DK      +    +     +    G   + HP+ + K   +   I       
Sbjct: 761  -DTDDFYADKNATPLDAAPTEAENLLEDYASTGLSVNNHPISLLKKQHKLKDISWSNSLK 819

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 + +++   V  +Q   T  G  + ++T  +         +
Sbjct: 820  DKTNKSVVKVLGAVTGRQAPGTAAG--VTFLTLEDDIGNMNVVVW 862


>gi|325684283|gb|EGD26456.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            delbrueckii subsp. lactis DSM 20072]
          Length = 1164

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/1037 (29%), Positives = 485/1037 (46%), Gaps = 64/1037 (6%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  S+ ++L   +   +++         A+A+TD N  F   +F Q+A  AGI+P++G 
Sbjct: 6    LQTISANTILASPMKTADLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLGL 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            Q             +G         +V L  + +GYQ L+ L S + +           L
Sbjct: 66   QGRF----------KGIELEEAEYDLVFLAQSQKGYQSLMRLSSFLNIASGDLAGPAPSL 115

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
            + L E+    +I+  G +S         NS +   K+L  F       LY+ +       
Sbjct: 116  ADLPELSDLTVIVPAGLTSELRQLNKLRNSGEEYVKKLQAFLPKGLP-LYLGVYPAESA- 173

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD---RPRVTP 250
               ++ V +LA    LP+    +  +L   D     VL A+    V+ + +         
Sbjct: 174  AAYDAYVKKLAEISALPITVVEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAEGQG 233

Query: 251  DHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             H+L+    +     +  L EAL N+ EIA  C   +    P LP F +          +
Sbjct: 234  SHWLRPAPVLEDACREMGLEEALANSGEIAASCHAKIPFKEPQLPVFPQATG----LSSD 289

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L   A AGLE          G     Y  RL  EL VI +M F+ YFLIV D + + +
Sbjct: 290  QYLEKLAFAGLEKL--------GLKQGIYHARLQKELAVIQQMGFADYFLIVGDIVNYCR 341

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +    VGPGRGS AGS+ AYAL IT IDPL++ LLFERFLNP R  MPD D+DF    R 
Sbjct: 342  QRGALVGPGRGSAAGSLVAYALGITQIDPLKYDLLFERFLNPARADMPDIDLDFTTSGRK 401

Query: 429  EVIRYVQNKYGH--------ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
                YVQ KYG         + VA+I+   +++AK+ L   G+   +    + RL + + 
Sbjct: 402  LAFAYVQEKYGAKARFGEGSDLVARILALTTMKAKSVLERTGQVFGLTLPAIARLKQAM- 460

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                   +L      + F+    A P    L + + +LEGL     THA G+VI + PLS
Sbjct: 461  ---GAAKTLAEAGQQAEFKALVAASPLTRLLYQTAARLEGLPEDTGTHAPGLVISEEPLS 517

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            + + +     + L   +   K++EK GL+K DFL L  L LL+  L  + +    +DL+ 
Sbjct: 518  RQIGLMTGKEAPLWTVEQTKKYVEKYGLLKIDFLTLDNLELLEGVLAEIQKSSGPLDLTR 577

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD +T  L     T  IFQ  SSGM++ L  +QP   +D+   V+LYRPGPI +I +
Sbjct: 578  LPLDDPDTLRLFARGETQQIFQFNSSGMQEVLRKIQPRTFDDLSVAVALYRPGPIASIPL 637

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  RKNG   +    P +  +L  T G+ +YQEQVMQ A++ +G+SL+EADV R A+ KK
Sbjct: 638  YVARKNGTSPVQYPDPSLKEVLGPTYGIFVYQEQVMQTARIFAGFSLAEADVFRNAISKK 697

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                + ++K +F++GA + G S+  A  ++ L+  FA+YGFN SHA AYA+++Y  A++ 
Sbjct: 698  QAGLLAEEKGKFVAGAVRKGHSRQAAEAVYALIEPFANYGFNHSHAVAYALLAYWQAFLS 757

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             H+P EF    +       +      + AR+  ++I+ P +N    + ++ + RIY  L 
Sbjct: 758  VHFPREFYLEKLRASRGKEK--GAIIRQARKAGVEILGPEINLSQAEARLFEGRIYLGLK 815

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             I G+       ++     +P  S   F  ++D+K+L  + L  L+ AG  D    +R  
Sbjct: 816  DIMGITPAFLDQLLA--LKRPVTSFPAFLRQLDTKELKEKQLVPLIEAGLFDQVSPNRAS 873

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL +  N+   A+  +K+     + + A E          E   +  ++ +   E+R +G
Sbjct: 874  LLVNCGNMLNTARLSQKSLVL-QDFLAAKE----------ENVPMPTAAEKVAMEERAMG 922

Query: 961  FYFSGHPLDVYKPIL-RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG--- 1016
            F  +  PL++    L ++ G K +        G    + A  + K   + ++G+R G   
Sbjct: 923  FAVTASPLEIAGKALAKRYGAKPFAGLALNETGQ---VLAQFIKKNNWRVKRGARAGELG 979

Query: 1017 -WVTFSEPAKEYEANFF 1032
                FS+     +   F
Sbjct: 980  SNAVFSDGQTSEKVTIF 996


>gi|223940255|ref|ZP_03632114.1| DNA polymerase III, alpha subunit [bacterium Ellin514]
 gi|223891082|gb|EEF57584.1| DNA polymerase III, alpha subunit [bacterium Ellin514]
          Length = 1420

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/1033 (26%), Positives = 471/1033 (45%), Gaps = 91/1033 (8%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K   ++ L +HS YS L   LS+  +++     + PA+A+TD  NL  A EF   A  AG
Sbjct: 421  KVKHYLPLNMHSYYSFLNSTLSVEGVVNLARRYELPAVALTDDGNLHGAAEFVLAAKKAG 480

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+P++G                 +     +P++   V   +GY  L  L+S         
Sbjct: 481  IKPVLGV----------------RVKVGGIPAL-FYVENTKGYHNLCHLLSA-------- 515

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               +   +   E  TEGL+ ++                             F  R Y  +
Sbjct: 516  --PKELTARELEGRTEGLLAVSYNRL---------------------LAPFFPGRFYFAV 552

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                       S+        E P VA     +    D   +DV+ ++   T++ Q+   
Sbjct: 553  ----------NSREAMRDAPREWPCVAALACRYAVPGDRWKYDVVQSIRTLTLLKQEHPE 602

Query: 247  RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            ++     + ++  EM  +F + PE L NT EIA RCSF      P  P F  ++      
Sbjct: 603  KIMGGQLHFRSPMEMQRMFGEHPELLVNTNEIAERCSFEFPFGPPQFPAFATRDG----L 658

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  LR   + GLE R           A+ +R++++ EL++I  + +  YFL++ D +Q
Sbjct: 659  SSKALLRKLVMDGLEKRYKD-------RAEKHRKQVEEELSIIEEVGYEEYFLVMWDILQ 711

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR---MSMPDFDIDF 422
              KK  I     RGS A S+  Y L I+ + P+RF L F RFLN DR     +PD D+DF
Sbjct: 712  SCKKEGIE-WITRGSAADSLVCYCLEISGVCPIRFELYFRRFLNKDRMALNKLPDIDVDF 770

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              DR+D+VI  +  KYG E+ A +  F + QA+ A+ DV + L +   Q+ R  + IP+ 
Sbjct: 771  PHDRKDDVIDLIFKKYGEEKTAIVGGFSTYQARGAVADVAKVLGVSEFQIRRFTERIPHT 830

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
             A  ++ + + +     +  L +      LE+++ L+G  R+A  H  G+V+  +P+ +L
Sbjct: 831  AAIGLT-EILKEHQECGDLPLEEDPYKSALEMAEFLDGFPRYAKMHPCGLVLSRQPMHEL 889

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL-SLI 601
             P +   +   P T ++M  +E  GLIK D L    L +++   + L QRG++ DL +L 
Sbjct: 890  TPTFIANK-GYPTTHYDMDAVEMIGLIKMDVLAQGGLAVMRDMDEGLRQRGIQFDLAALE 948

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIV 659
            P++D   + +++  G   +  +ES  M           I+ +IA+VS+ RPG       V
Sbjct: 949  PWEDKRVWEMISGGGARAVHHIESPAMVSLCRMCNVSEIDGLIAIVSVIRPGAANEQKKV 1008

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R  G E     HP ++  LK T G+++Y+E ++QI +  +G     ADVLRRA+ K
Sbjct: 1009 KFTRRYQGMEPPSYPHPSLEACLKSTHGLVVYEEHILQICEAFAGLPPGRADVLRRALNK 1068

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
              +E +++ ++ FI+ A   G ++     ++EL + F  Y F K+H+ AY + +YQ+AW+
Sbjct: 1069 YKQETIEEIRQEFIASARARGHAEENIQEVWELASGFEGYAFCKAHSTAYGIEAYQSAWL 1128

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K +YPVEF+AA ++           +  +  +  +Q++PP V+ P   F   +  I   +
Sbjct: 1129 KLNYPVEFMAAVLS-NGKGFYDPLVYVLECHRLGLQLLPPCVSEPGPHFVPTEKFIRVPI 1187

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
              IKG+   T   I++    + F+SL DF  RV +       +E L+  GA D FG  R 
Sbjct: 1188 RYIKGLTAKTNERILKEHQQRLFESLNDFYRRVGASG---EEMELLLRVGAFDRFGKKRT 1244

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            +       +++       +   K   +          ++ LE+ S      + + E  + 
Sbjct: 1245 EQFWECQFLKRA---YGASMDLKQGWLLPPPGMEQLPEMQLEEPS---RREQLQWEAELF 1298

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GF  SGHPL++++ I          + +    G  + L  +++ ++      G  + ++T
Sbjct: 1299 GFPVSGHPLELHEEI--AWETYCSVDKLGDHIGEEVILCGLIIEQRMHHQTTGELMKFLT 1356

Query: 1020 FSEPAKEYEANFF 1032
             ++     E   F
Sbjct: 1357 LADWTGIIETELF 1369


>gi|313123522|ref|YP_004033781.1| DNA polymerase iii, alpha subunit (dnae) [Lactobacillus delbrueckii
            subsp. bulgaricus ND02]
 gi|312280085|gb|ADQ60804.1| DNA polymerase III, alpha subunit (DnaE) [Lactobacillus delbrueckii
            subsp. bulgaricus ND02]
          Length = 1159

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/1033 (29%), Positives = 484/1033 (46%), Gaps = 64/1033 (6%)

Query: 18   SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDI 77
            S+ ++L   +   +++         A+A+TD N  F   +F Q+A  AGI+P++G Q   
Sbjct: 5    SANTILASPMKTADLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLGLQGRF 64

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
                      +G         +V L  + +GYQ L+ L S + +           L+ L 
Sbjct: 65   ----------KGIELEEAEYDLVFLAQSQKGYQSLMRLSSFLNIASGDLAGPAPSLADLP 114

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE 197
            E+    +I+  G +S         NS +   K+L  F       LY+ +          +
Sbjct: 115  ELSDLTVIVPAGLTSELRQLNKLRNSGEEYVKKLQAFLPKGLP-LYLGVYPAESA-AAYD 172

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD---RPRVTPDHYL 254
            + V +LA    LP+    +  +L   D     VL A+    V+ + +          H+L
Sbjct: 173  AYVKKLAEISALPITVVEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAEGQGSHWL 232

Query: 255  KNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +    +     +  L EAL N+ +IA  C   +    P LP F +          +  L 
Sbjct: 233  RPAPVLEDACREMGLEEALANSGKIAASCHAKIPFKEPQLPVFPQATG----LSSDQYLE 288

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
              A AGLE          G     Y  RL  EL VI +M F+ YFLIV D + + ++   
Sbjct: 289  KLAFAGLEKL--------GLRQGIYHARLQKELAVIQQMGFADYFLIVGDIVNYCRQRGA 340

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS+ AYAL IT IDPL++ LLFERFLNP R  MPD D+DF    R     
Sbjct: 341  LVGPGRGSAAGSLVAYALGITQIDPLKYDLLFERFLNPARADMPDIDLDFTTSGRKLAFA 400

Query: 433  YVQNKYGH--------ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            YVQ KYG         + VA+I+   +++AK+ L   G+   +    + RL + +     
Sbjct: 401  YVQEKYGAKARFGEGSDLVARILALTTMKAKSVLERTGQVFGLTLPAIARLKQAM----G 456

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               +L      + F+    A P    L + + +LEGL     THA G+VI + PLS+ + 
Sbjct: 457  AAKTLAEAGQQAEFKALVAASPLTRLLYQTAARLEGLPEDTGTHAPGLVISEEPLSRQIG 516

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +     + L   +   K++EK GL+K DFL L  L LL+  L  + +    +DL+ +P D
Sbjct: 517  LMTGKEAPLWTVEQTKKYVEKYGLLKIDFLTLDNLELLEGVLAEIQKSSGPLDLTRLPLD 576

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T  L     T  IFQ  SSGM++ L  +QP   +D+   V+LYRPGPI +I +Y  R
Sbjct: 577  DPDTLRLFARGETQQIFQFNSSGMQEVLRKIQPRTFDDLSVAVALYRPGPIASIPLYVAR 636

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            KNG   +    P +  +L  T G+++YQEQVMQ A++ +G+SL+EADV R A+ KK    
Sbjct: 637  KNGTSPVQYPDPSLKEVLGPTYGILVYQEQVMQTARIFAGFSLAEADVFRNAISKKQAGL 696

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + ++K +F++GA + G S+  A  ++ L+  FA+YGFN SHA AYA+++Y  A++  H+P
Sbjct: 697  LAEEKGKFVAGAVRKGHSRQAAEAVYALIEPFANYGFNHSHAVAYALLAYWQAFLSVHFP 756

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF    +       +      + AR+  ++I+ P +N    + ++ + RIY  L  I G
Sbjct: 757  REFYLEKLRASRGKEK--GAIIRQARKAGVEILGPDINLSQAEARLFEGRIYLGLKDIMG 814

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +       ++     +P  S   F  ++D+K+L  + L  L+ AG  D    +R  LL +
Sbjct: 815  ITPAFLDQLLA--LKRPVTSFPAFLRQLDTKELKEKQLVPLIEAGLFDQVSPNRASLLVN 872

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
              N+   A+  +K+     + + A E          E   +  ++ +   E+R +GF  +
Sbjct: 873  CGNMLNTARLSQKSLVL-QDFLAAKE----------ENVPMPTAAEKVAMEERAMGFAVT 921

Query: 965  GHPLDVYKPIL-RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG----WVT 1019
              PL++    L ++ G K +        G    + A  + K   + ++G+R G       
Sbjct: 922  ASPLEIAGKALAKRYGAKPFAGLALNETGQ---VLAQFIKKNNWRVKRGARAGELGSNAV 978

Query: 1020 FSEPAKEYEANFF 1032
            FS+     +   F
Sbjct: 979  FSDGQTSEKVTIF 991


>gi|116093219|gb|ABJ58372.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 1159

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/990 (29%), Positives = 468/990 (47%), Gaps = 57/990 (5%)

Query: 18  SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDI 77
           S+ ++L   +   +++         A+A+TD N  F   +F Q+A  AGI+P++G Q   
Sbjct: 5   SANTILASPMKTADLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLGLQGRF 64

Query: 78  DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
                     +G         +V L  + +GY+ L+ L S + +           L+ L 
Sbjct: 65  ----------KGIELEEAEYDLVFLAQSQKGYKSLMRLSSFLNIASGDLAGPAPSLADLP 114

Query: 138 EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE 197
           E+    +I+  G +S         NS +   K+L  F       LY+ +          +
Sbjct: 115 ELSDLTVIVPAGLTSELRQLNKLRNSGEEYVKKLQAFLPKGLP-LYLGVYPAESA-AAYD 172

Query: 198 SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD---RPRVTPDHYL 254
           + V +LA    LP+    +  +L   D     VL A+    V+ + +          H+L
Sbjct: 173 AYVKKLAEISSLPITVVEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAEGQGSHWL 232

Query: 255 KNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
           +    +     +  L EAL N+ +IA  C   +    P LP F +          +  L 
Sbjct: 233 RPAPVLEDACREMGLEEALANSGKIAASCQAKIPFEEPQLPVFPQATG----LSSDQYLE 288

Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             A AGLE          G     Y  RL  EL VI +M F+ YFLIV D + + ++   
Sbjct: 289 KLAFAGLEKL--------GLRQGIYHARLQKELAVIQQMGFADYFLIVGDIVNYCRQKGA 340

Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
            VGPGRGS AGS+ AYAL IT IDPL++ LLFERFLNP R  MPD D+DF    R     
Sbjct: 341 LVGPGRGSAAGSLVAYALGITQIDPLKYDLLFERFLNPARADMPDIDLDFTTSGRKLAFA 400

Query: 433 YVQNKYGH--------ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           YVQ KYG         + VA+I+   +++AK+ L   G+   +    + RL + +     
Sbjct: 401 YVQEKYGAKARFGEGSDLVARILALTTMKAKSVLERTGQVFGLTLPAIARLKQAM----G 456

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +L      + F+    A P    L + + +LEGL     THA G+VI + PLS+ + 
Sbjct: 457 AAKTLAEAGQQAEFKALVAASPLTRLLYQTAARLEGLPEDTGTHAPGLVISEEPLSRQIG 516

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
           +     + L   +   K++EK GL+K DFL L  L LL+  L  + +    +DL+ +P D
Sbjct: 517 LMTGKEAPLWTVEQTKKYVEKYGLLKIDFLTLDNLELLEGVLAEIQKSSGPLDLTRLPLD 576

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D +T  L     T  IFQ  SSGM++ L  +QP   +D+   V+LYRPGPI +I +Y  R
Sbjct: 577 DPDTLRLFARGETQQIFQFNSSGMQEVLRKIQPRTFDDLSVAVALYRPGPIASIPLYVAR 636

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           KNG   +    P +  +L  T G+ +YQEQVMQ A++ +G+SL+EAD+ R A+ KK    
Sbjct: 637 KNGTSPVQYPDPSLKEVLGPTYGIFVYQEQVMQTARIFAGFSLAEADIFRNAISKKQAGL 696

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           + ++K++F++GA + G S+  A  ++ L+  FA+YGFN SHA AYA+++Y  A++  H+P
Sbjct: 697 LAEEKDKFVAGAVRKGHSRQAAEAVYALIEPFANYGFNHSHAVAYALLAYWQAFLSVHFP 756

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            EF    +       +      + AR+  ++I+ P +N    + ++ + RIY  L  I G
Sbjct: 757 REFYLEKLRASRGKEK--GAIIRQARKAGVEILGPDINLSRAEARLFEGRIYLGLKDIMG 814

Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
           +       ++     +P  S   F  ++D+K+L  + L  L+ AG  D    +R  LL +
Sbjct: 815 ITPAFLDQLLA--LKRPVTSFTAFLRQLDTKELKEKQLVPLIEAGLFDQVSPNRASLLVN 872

Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
             N+   A+  +K+     + + A E          E   +  ++ +   E+R +GF  +
Sbjct: 873 CGNMLNTARLSQKSLVL-QDFLAAKE----------ENVPMPTAAEKVAMEERAMGFAVT 921

Query: 965 GHPLDVYKPIL-RKMGIKGYEESVATIRGN 993
             PL++    L ++ G K +        G 
Sbjct: 922 ASPLEIAGKALAKRYGAKPFAGLALNETGQ 951


>gi|163743759|ref|ZP_02151132.1| DNA polymerase III, alpha subunit, putative [Phaeobacter
            gallaeciensis 2.10]
 gi|161382908|gb|EDQ07304.1| DNA polymerase III, alpha subunit, putative [Phaeobacter
            gallaeciensis 2.10]
          Length = 806

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 221/832 (26%), Positives = 367/832 (44%), Gaps = 45/832 (5%)

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPE 269
            +VA  + L       +  DVL  +  +  +     R     +  LK  ++M  IF D P 
Sbjct: 1    MVAVGDVLMHRANRRQLADVLTCMRENINIDDIGTRALPNAERRLKAGADMARIFRDHPA 60

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            AL  T EIA RC+F L   +   P       +   +  ++ L   A  GL+ R   G   
Sbjct: 61   ALRRTAEIANRCNFDLSELSYEYPH-----EEAEGETPQDRLERLAQEGLKRRYPDGPPD 115

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
            +        + ++ EL+ +  ++F  YFL V D +Q+AK   I +  GRGS A S+  Y 
Sbjct: 116  RAI------KLMEKELSAVKDLEFPAYFLTVHDIVQFAKSKGI-LCQGRGSAANSILCYL 168

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L ITD+ P   +++FERF++  R   PD D+DF  +RR+EVI+++  KYG  R     T 
Sbjct: 169  LGITDVSPDMIAMVFERFVSKHRGEPPDIDVDFEHERREEVIQWIYQKYGRHRAGLCATV 228

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
               + + A+R+VG+ + +       L   I       V L  I +        L D  + 
Sbjct: 229  IHFRTRVAIREVGKVMGLSQDVTAGLSGQIWGMSNGSVDLDRIRELG----LNLEDRRLM 284

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            + + +  ++ G  RH S H  G VI    L +L P+      D  V  ++   I+   ++
Sbjct: 285  QTIRLIGEIIGFPRHLSQHVGGFVITSGRLDELAPIENAAMEDRTVICWDKDDIDALRIL 344

Query: 570  KFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K D L L  LT ++K+   + Q   +   ++ IP  D  TY +L     +G+FQ+ES   
Sbjct: 345  KVDILALGMLTCIRKAFALMQQHENITHSIATIPQKDEATYDMLCAADAVGVFQVESRAQ 404

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
               L  M+P    D++  V++ RPGPI  D +  Y  R+NG EK     P ++ + + T+
Sbjct: 405  MNFLPRMRPRKFYDLVIEVAIVRPGPIQGDMVRPYIRRRNGLEKSDPFGPELEQVTRRTE 464

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTI 745
            GV ++QEQ +QIA + +G+S  EAD LRR++   +    + K +++FI+G  KN  S+ I
Sbjct: 465  GVPLFQEQALQIAVVGAGFSAEEADHLRRSLASFRRMGTIGKYRDKFIAGMLKNNYSREI 524

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A   F  +  FADYGF +SHAAA+A+++Y +AW+K H+P  F  A +  +        + 
Sbjct: 525  AERCFGQIEGFADYGFPESHAAAFAMLAYVSAWLKCHHPAVFACALLNSQPMGFYAPAQI 584

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADK 860
             +D R   I++ P  VN    D  +     G   +      IKG     A  I+ A  + 
Sbjct: 585  VRDVRDHGIEVRPICVNQSQWDNSLERRPDGTLALRLGFRQIKGFKEDDAGWIIAARGNG 644

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             +   E    R          LE L  A A    G SR   L  + +I   A        
Sbjct: 645  -YIDPEHLWLRAGLA---PTALERLAEADAFSSMGISRRDALWQVKSITTPA-------- 692

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                 +F  +    +           +       +   +      HP+++ +P L  +  
Sbjct: 693  --PLPLFNDQLDGEAINEPNVMLPRMHLGEEVVEDYVSMRLSLRAHPMELLRPTLPGL-- 748

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                + +       + +  +V+++Q+  T  G  + ++T  +         +
Sbjct: 749  -TCNDQLIKAPLQRVSVGGLVITRQRPGTASG--VIFLTLEDETGVCNVVVW 797


>gi|104773898|ref|YP_618878.1| DNA polymerase III, alpha subunit (DnaE) [Lactobacillus delbrueckii
            subsp. bulgaricus ATCC 11842]
 gi|103422979|emb|CAI97659.1| DNA polymerase III, alpha subunit (DnaE) [Lactobacillus delbrueckii
            subsp. bulgaricus ATCC 11842]
          Length = 1159

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1032 (28%), Positives = 482/1032 (46%), Gaps = 62/1032 (6%)

Query: 18   SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDI 77
            S+ ++L   +   +++         A+A+TD N  F   +F Q+A  AGI+P++G Q   
Sbjct: 5    SANTILASPMKTADLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLGLQGRF 64

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
                      +G         +V L  + +GY+ L+ L S + +           L+ L 
Sbjct: 65   ----------KGIELEEAEYDLVFLAQSQKGYKSLMRLSSFLNIASGDLAGPAPSLADLP 114

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE 197
            E+    +I+  G +S         NS +   K+L  F       LY+ +          +
Sbjct: 115  ELSDLTVIVPAGLTSELRQLNKLRNSGEEYVKKLQAFLPKGLP-LYLGVYPAESA-AAYD 172

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD---RPRVTPDHYL 254
            + V +LA    LP+    +  +L   D     VL A+    V+ + +     +    H+L
Sbjct: 173  AYVKKLAEISALPITVVEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAQGQGSHWL 232

Query: 255  KNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +    +     +  L EAL N+ +IA  C   +    P LP F +          +  L 
Sbjct: 233  RPAPVLEDACREMGLEEALANSGKIAASCQAKIPFKEPQLPVFPQATG----LSSDQYLE 288

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
              A AG+E          G     Y  RL  EL VI +M F+ YFLIV D + + ++   
Sbjct: 289  KLAFAGMEKL--------GLRQGIYHARLQKELAVIQQMGFADYFLIVGDIVNYCRQKGA 340

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS+ AYAL IT IDPL++ LLFERFLNP R  MPD D+DF    R     
Sbjct: 341  LVGPGRGSAAGSLVAYALGITQIDPLKYDLLFERFLNPARADMPDIDLDFTTSGRKLAFA 400

Query: 433  YVQNKYG--------HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            YVQ KYG         + VA+I+   +++AK+ L   G+   +    + RL + +     
Sbjct: 401  YVQEKYGVKARFGEGSDLVARILALTTMKAKSVLERTGQVFGLTLPAIARLKQAM----G 456

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               +L      + F+    A P    L + + +LEGL     THA G+VI + PLS+ + 
Sbjct: 457  AAKTLAEAGQQAEFKALVAASPLTRLLYQTAARLEGLPEDTGTHAPGLVISEEPLSRQIG 516

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +     + L   +   K++EK GL+K DFL L  L LL+  L  + +    +DL+ +P D
Sbjct: 517  LMTGKEAPLWTVEQTKKYVEKYGLLKIDFLTLDNLELLEGVLAEIQKSSGPLDLTRLPLD 576

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T  L     T  IFQ  SSGM++ L  +QP   +D+   V+LYRPGPI +I +Y  R
Sbjct: 577  DPDTLRLFARGETQQIFQFNSSGMQEVLRKIQPRTFDDLSVAVALYRPGPIASIPLYVAR 636

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            KNG   +    P +  +L  T G+ +YQEQVMQ A++ +G+SL+EAD+ R A+ KK    
Sbjct: 637  KNGTSPVQYPDPSLKEVLGPTYGIFVYQEQVMQTARIFAGFSLAEADIFRNAISKKQAGL 696

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + ++K++F++GA + G S+  A  ++ L+  FA+YGFN SHA AYA+++Y  A++  H+P
Sbjct: 697  LAEEKDKFVAGAVRKGHSRQAAEAVYALIEPFANYGFNHSHAVAYALLAYWQAFLSVHFP 756

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF    +       +      + AR+  ++I+ P +N    + ++ + RIY  L  I G
Sbjct: 757  REFYLEKLRASRGKEK--GAIIRQARKAGVEILGPDINLSRAEARLFEGRIYLGLKDIMG 814

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +       ++     +P  S   F  ++D+K+L  + L  L+ AG  D    +R  LL +
Sbjct: 815  ITPAFLDQLLA--LKRPVTSFTAFLRQLDTKELKEKQLVPLIEAGLFDQVSPNRASLLVN 872

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
              N+   A+  +K+     + + A E          E   +  ++ +   E+R +GF  +
Sbjct: 873  CGNMLNTARLSQKSLVL-QDFLAAKE----------ENVPMPTAAEKVAMEERAMGFAVT 921

Query: 965  GHPLDVYKPIL-RKMGIKGYEESVATIRGNNIRLAAMVVS---KQQKKTRKGSRIGWVTF 1020
              PL++    L ++ G K +        G    LA  +     + ++  R G       F
Sbjct: 922  ASPLEIAGKALAKRYGAKPFAGLALNETGQ--VLAQFIKKNDWRVKRGARAGELGSNAVF 979

Query: 1021 SEPAKEYEANFF 1032
            S+     +   F
Sbjct: 980  SDGQTSEKVTIF 991


>gi|298231030|ref|ZP_06964711.1| DNA polymerase III DnaE [Streptococcus pneumoniae str. Canada
            MDR_19F]
          Length = 863

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/789 (32%), Positives = 410/789 (51%), Gaps = 49/789 (6%)

Query: 246  PRVTPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P  +      + S +  +F    P+AL+N  ++    S+ L      LPRF         
Sbjct: 13   PLRSRQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSL-KLPRFNP------- 64

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                      AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +
Sbjct: 65   -------ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLL 117

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++ + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID   
Sbjct: 118  RFGRSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPD 177

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
              R + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I     
Sbjct: 178  IYRPDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN 237

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                  A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P
Sbjct: 238  LK---SAYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIP 294

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +      ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  
Sbjct: 295  L--KYGDEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDL 352

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  
Sbjct: 353  EDKETLDLFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVA 412

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK   
Sbjct: 413  RKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDAS 472

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHY
Sbjct: 473  AMHEMRVSFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHY 532

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P  F    +     +      +  DA +   ++   S+NT     K+ +  IY  L +IK
Sbjct: 533  PAIFYQVMLNSSNSD------YLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIK 586

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  
Sbjct: 587  GVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFN 643

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            +L N+ ++ +        +  ++F     ++ +              +F  EQ +LG   
Sbjct: 644  NLANLFEFVK--------ELGSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGV 689

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S HPL      +    I            +   +   V   +  +T+KG  + ++   + 
Sbjct: 690  SKHPLQ----AIASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDS 745

Query: 1024 AKEYEANFF 1032
             K+ +   F
Sbjct: 746  KKKLDVTLF 754


>gi|302327802|gb|ADL27003.1| DNA polymerase III, alpha subunit [Fibrobacter succinogenes subsp.
            succinogenes S85]
          Length = 1285

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/765 (35%), Positives = 399/765 (52%), Gaps = 43/765 (5%)

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               + +  + +     L+ R          H  +  +R+  ELN I  M  +GY LIV D
Sbjct: 392  PGGDADIYITHLCNERLKWRFPDEDFKFPAHETNVGKRMYKELNCIRNMNVAGYLLIVWD 451

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI W++++ IPVGPGRGS AGS+  Y + ITDIDPL F LLFERFLNP+R+SMPD D DF
Sbjct: 452  FINWSREHGIPVGPGRGSAAGSLVTYIIGITDIDPLTFDLLFERFLNPERVSMPDIDTDF 511

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-- 480
                R  VI+YV +KYG E V QIIT+G L++KA + DV R L +P ++   + KL P  
Sbjct: 512  ADRDRGRVIQYVTDKYGKECVGQIITYGMLKSKAVITDVARVLGIPPAEAKAITKLFPQR 571

Query: 481  -----------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
                              +L+        +    +  S   L +++++LE L R    HA
Sbjct: 572  TLNFSLKQAWTGKDKKGNNLEDGYSPEPLQAMIGSRASYQNLWDVAKRLEDLPRQTGVHA 631

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G+VI   P+  L P+YR    D PV  ++  + E  GL+K DFLGL  L+++Q ++  +
Sbjct: 632  CGVVITPTPIYNLAPLYRAAPEDTPVVMYDKHYAEDIGLLKMDFLGLINLSIIQDTVKMV 691

Query: 590  AQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q R +K+ ++ IP DD  T+ LL    T  +FQ ES GM++ L  ++P  I D+IA+ +
Sbjct: 692  EQNRNIKLVMNKIPIDDKATFELLGKGLTTTVFQFESPGMQKYLRELKPTRIFDLIAMNA 751

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGPID I  +  RKNGKE+I   HP ++ +L ET GVI+YQEQVM++AQ+L GYSL 
Sbjct: 752  LYRPGPIDQIPHFIARKNGKEEIDCYHPDLEQVLGETYGVIVYQEQVMKLAQILGGYSLG 811

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD +RR M KK+ E+M K +  F       G  K +   +++ +  F  Y FNKSHAAA
Sbjct: 812  GADNIRRIMAKKMPEKMAKLEPEFFQKCLDKGYDKAMIQKVWDAVLPFCGYAFNKSHAAA 871

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA ++YQTA++KTHY  E++AASMT +M   E       + ++  I ++ P++NT    F
Sbjct: 872  YAYVAYQTAYLKTHYGPEYMAASMTSKMGKTEDTVTIILECKRLGIPVLSPNINTSLGVF 931

Query: 829  KVGDNR-IYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRV---------DSKKL 877
                   I Y LA I+ VG      ++     +  +  + DFC RV             L
Sbjct: 932  SANTKGQILYGLAGIRNVGIAVVEDVVAERERRGIYKDIFDFCKRVTEYQAAQPEKRPPL 991

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFS 935
            N++VLE L+ AGALD    SR     ++D   + A   ++++     ++F         +
Sbjct: 992  NKKVLECLIMAGALDDLPGSRAVQCATVDRALEVAMRSQEDKAKGQVSLFDLGGPAAMPN 1051

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI----- 990
                LE+     +      E+ VLG + SGHPLD ++P L         E   T      
Sbjct: 1052 TAEVLEEAEEWTAMEMLNKERSVLGLFLSGHPLDEFRPELTGFTSCSLSEDEITRYVGDT 1111

Query: 991  ---RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                G  IR+       +  +T++G  IG     +   E E  FF
Sbjct: 1112 VVVGGVVIRM-------RSIETKRGDTIGSGAIQDFQGEIE-MFF 1148



 Score =  179 bits (455), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 85/344 (24%), Positives = 153/344 (44%), Gaps = 20/344 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL-------EFSQKA 62
           +FVHLQ HS +S+L+ +  L++IL   AA+  PA+A+TD   +F  L       E ++K 
Sbjct: 2   AFVHLQTHSEFSILQASARLDDILAAAAAENAPAVALTDHGAMFGILEIQTRGKELNKKR 61

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              G+ P+          D    + +  T   T   + LLV   +GY  L+ +VS  Y  
Sbjct: 62  KEQGLPPVKTVYGCHIYVDTPSASQKDPT---TFERLTLLVENEKGYYNLLRIVSYRYED 118

Query: 123 DQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GD 180
            +       + L  + E   EG+I + G       +        +A + +    ++F  D
Sbjct: 119 GERWAEIPSVPLETINEF-KEGIIAIAGDYFSCYGQNVASGRDSLALEYMDRLNEIFDHD 177

Query: 181 RLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-T 238
            LY+++  +    +   ++  V+LA  +   +VA  +  ++  ED  +H +L  ++   T
Sbjct: 178 HLYISVCDNGIPQQKHVNEFNVELAKKYGREVVAVGDVHYIKPEDATSHKILRCISLKVT 237

Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ--VHAPILPRFI 296
           +   +D+   T   Y +   EMV +F  +P A+ENTV+IA RC+F ++  +     PRF 
Sbjct: 238 LNGFEDKRFPTEKFYFRTEKEMVELFGHIPGAIENTVKIAERCNFTVKTGIGDEFWPRFK 297

Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +     +E +N    KA+   E       + +       + R
Sbjct: 298 IPDEFLASEEYQN---IKAIMKAEYDAEYPVVRERELKGVIKDR 338


>gi|261415097|ref|YP_003248780.1| DNA polymerase III, alpha subunit [Fibrobacter succinogenes subsp.
            succinogenes S85]
 gi|261371553|gb|ACX74298.1| DNA polymerase III, alpha subunit [Fibrobacter succinogenes subsp.
            succinogenes S85]
          Length = 1285

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/765 (35%), Positives = 399/765 (52%), Gaps = 43/765 (5%)

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               + +  + +     L+ R          H  +  +R+  ELN I  M  +GY LIV D
Sbjct: 392  PGGDADIYITHLCNERLKWRFPDEDFKFPAHETNVGKRMYKELNCIRNMNVAGYLLIVWD 451

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI W++++ IPVGPGRGS AGS+  Y + ITDIDPL F LLFERFLNP+R+SMPD D DF
Sbjct: 452  FINWSREHGIPVGPGRGSAAGSLVTYIIGITDIDPLTFDLLFERFLNPERVSMPDIDTDF 511

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-- 480
                R  VI+YV +KYG E V QIIT+G L++KA + DV R L +P ++   + KL P  
Sbjct: 512  ADRDRGRVIQYVTDKYGKECVGQIITYGMLKSKAVITDVARVLGIPPAEAKAITKLFPQR 571

Query: 481  -----------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
                              +L+        +    +  S   L +++++LE L R    HA
Sbjct: 572  TLNFSLKQAWTGKDKKGNNLEDGYSPEPLQAMIGSRASYQNLWDVAKRLEDLPRQTGVHA 631

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G+VI   P+  L P+YR    D PV  ++  + E  GL+K DFLGL  L+++Q ++  +
Sbjct: 632  CGVVITPTPIYNLAPLYRAAPEDTPVVMYDKHYAEDIGLLKMDFLGLINLSIIQDTVKMV 691

Query: 590  AQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q R +K+ ++ IP DD  T+ LL    T  +FQ ES GM++ L  ++P  I D+IA+ +
Sbjct: 692  EQNRNIKLVMNKIPIDDKATFELLGKGLTTTVFQFESPGMQKYLRELKPTRIFDLIAMNA 751

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGPID I  +  RKNGKE+I   HP ++ +L ET GVI+YQEQVM++AQ+L GYSL 
Sbjct: 752  LYRPGPIDQIPHFIARKNGKEEIDCYHPDLEQVLGETYGVIVYQEQVMKLAQILGGYSLG 811

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD +RR M KK+ E+M K +  F       G  K +   +++ +  F  Y FNKSHAAA
Sbjct: 812  GADNIRRIMAKKMPEKMAKLEPEFFQKCLDKGYDKAMIQKVWDAVLPFCGYAFNKSHAAA 871

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA ++YQTA++KTHY  E++AASMT +M   E       + ++  I ++ P++NT    F
Sbjct: 872  YAYVAYQTAYLKTHYGPEYMAASMTSKMGKTEDTVTIILECKRLGIPVLSPNINTSLGVF 931

Query: 829  KVGDNR-IYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRV---------DSKKL 877
                   I Y LA I+ VG      ++     +  +  + DFC RV             L
Sbjct: 932  SANTKGQILYGLAGIRNVGIAVVEDVVAERERRGIYKDIFDFCKRVTEYQAAQPEKRPPL 991

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFS 935
            N++VLE L+ AGALD    SR     ++D   + A   ++++     ++F         +
Sbjct: 992  NKKVLECLIMAGALDDLPGSRAVQCATVDRALEVAMRSQEDKAKGQVSLFDLGGPAAMPN 1051

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI----- 990
                LE+     +      E+ VLG + SGHPLD ++P L         E   T      
Sbjct: 1052 TAEVLEEAEEWTAMEMLNKERSVLGLFLSGHPLDEFRPELTGFTSCSLSEDEITRYVGDT 1111

Query: 991  ---RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                G  IR+       +  +T++G  IG     +   E E  FF
Sbjct: 1112 VVVGGVVIRM-------RSIETKRGDTIGSGAIQDFQGEIE-MFF 1148



 Score =  179 bits (455), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 85/344 (24%), Positives = 153/344 (44%), Gaps = 20/344 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL-------EFSQKA 62
           +FVHLQ HS +S+L+ +  L++IL   AA+  PA+A+TD   +F  L       E ++K 
Sbjct: 2   AFVHLQTHSEFSILQASARLDDILAAAAAENAPAVALTDHGAMFGILEIQTRGKELNKKR 61

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              G+ P+          D    + +  T   T   + LLV   +GY  L+ +VS  Y  
Sbjct: 62  KEQGLPPVKTVYGCHIYVDTPSASQKDPT---TFERLTLLVENEKGYYNLLRIVSYRYED 118

Query: 123 DQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GD 180
            +       + L  + E   EG+I + G       +        +A + +    ++F  D
Sbjct: 119 GERWAEIPSVPLETINEF-KEGIIAIAGDYFSRYGQNVASGRDSLALEYMDRLNEIFDHD 177

Query: 181 RLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-T 238
            LY+++  +    +   ++  V+LA  +   +VA  +  ++  ED  +H +L  ++   T
Sbjct: 178 HLYISVCDNGIPQQKHVNEFNVELAKKYGREVVAVGDVHYIKPEDATSHKILRCISLKVT 237

Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ--VHAPILPRFI 296
           +   +D+   T   Y +   EMV +F  +P A+ENTV+IA RC+F ++  +     PRF 
Sbjct: 238 LNGFEDKRFPTEKFYFRTEKEMVELFGHIPGAIENTVKIAERCNFTVKTGIGDEFWPRFK 297

Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +     +E +N    KA+   E       + +       + R
Sbjct: 298 IPDEFLASEEYQN---IKAIMKAEYDAEYPVVRERELKGVIKDR 338


>gi|326445257|ref|ZP_08219991.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC
            27064]
          Length = 1141

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/1060 (25%), Positives = 465/1060 (43%), Gaps = 64/1060 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL V S +S   GA    +++ + A      +A+TD +    A+  ++    AGI+P
Sbjct: 3    AFTHLHVASGFSARYGASHPQDLVRRAAGLGMGVLALTDRDTAAGAVRHAKACRDAGIRP 62

Query: 70   IIGCQLDIDMQD--------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            + G  L +                   G         + LL  +A G+ ++  L+S  + 
Sbjct: 63   LFGVDLAVAAHGTATRPPRRPRTPVRGGAHVAEPRLRVTLLARSATGWAQICRLISAAHA 122

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                          L+E   + +++L G +S P+ RA       +A++ L  +++  GD 
Sbjct: 123  R-PVDGFPAASREALRECLGKDVMVLLGPASEPV-RALAAGRGDLAQRLLAPWQEAAGDG 180

Query: 182  LYVNLQRHR----GYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            L +    +     G    R +   + L     +P V TN   +   E +   DVL A   
Sbjct: 181  LRLEAVAYGLPGLGPGSTRLAAHTLALGDRLGIPAVLTNAVRYERREQHRLADVLDAARL 240

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARRCSFIL 285
               V ++       + YLK+  EM  + + +  A           L  T E+A +C    
Sbjct: 241  LRPVPRRGVLD-PGERYLKSGPEMAEVAARVAAAAGAPAARGRRLLGETAEVAAQCEVDP 299

Query: 286  QVHAPI-LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY-RQRLDF 343
                 +  P F E +      E  + +R      L  R   G   +G         +L  
Sbjct: 300  VRDLGLGRPHFPEPQVVGAGAEPGDGMRL-----LRRRCEAGMTVRGLDRDARALDQLHH 354

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL VI ++ +  YFL VA  +   +   I V   RGSGAGS+  ++L I   +PL   LL
Sbjct: 355  ELAVIEQLGYEAYFLAVAQVVADTRAMGIRVA-ARGSGAGSMVNHSLFIATANPLEHRLL 413

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFL+  R ++PD D+D    RR EV   +  ++G ERVA      + +A+ ALRD G 
Sbjct: 414  FERFLSARRRTLPDIDLDVESHRRLEVYDRIFERFGSERVAVTGMPETYRARHALRDTGL 473

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            AL +    VDR+ K  P+  A  +   A+A+    R+          L E+++ L+ L R
Sbjct: 474  ALGIRPRTVDRIAKSFPHIRACDIR-SALAELPELRQLARHAGRFGPLWELAEGLDALPR 532

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
              + H  G+++    L   +P+        P+ Q +   +E  GL+K D LG++  + + 
Sbjct: 533  GYAMHPCGVILSSTSLLDRLPVQ-PTPGGYPMVQADKHDVEDMGLVKLDVLGVRMQSAMA 591

Query: 584  KSLDFLA----QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
             ++  +     +         +   D +T+ L+     LG FQ+ES G++  +  +QP  
Sbjct: 592  HAVAEIRRTTGRHIDLDSPDHVDLGDEQTFALIRRGQVLGCFQIESPGVQDLIARLQPRH 651

Query: 640  IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
            ++DIIA +SL+RPGP+   +   +   ++G E     HP + P++ +T GV+I+ EQ+M+
Sbjct: 652  LQDIIADISLFRPGPVKGGMPARFIAARHGAETPRYPHPDLVPIMDDTYGVVIWHEQIME 711

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            I ++L+G   + ADV RRA+     E + + +  F   A++ G +  +   +++++ +F 
Sbjct: 712  ILRVLTGCDRAAADVARRALA--DTERLPRVEAWFRRCAAERGYTPAVIGEVWDIIKEFG 769

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             YGF ++HA A+AV + Q+AW+KTHYP  F A  +  +   +   +   QDA+QF + I+
Sbjct: 770  AYGFCRAHAVAFAVPAVQSAWLKTHYPAAFYAGLLQHDP-GMWAPRVLVQDAKQFGVTIL 828

Query: 818  PPSVNTP----CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
            P  +N       V+       +  +L+ I+G+ T  +  I  A   +P+  L+D   R  
Sbjct: 829  PVDINHSRSAHSVEQTADGWGVRLALSTIRGITTAESARIEAA---QPYTGLQDLWLRA- 884

Query: 874  SKKLNRRVLESLVFAGALDCFG-YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
              + +  + + L+  GAL   G  +R  LL     + + A+   +   +    +     G
Sbjct: 885  --RPSLPLAQRLITIGALGPQGRLTRRDLLLQATELHRSAR--NRTTADGQLPL-----G 935

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
              +                   E  VL    S H L+ +  +L ++G        A  RG
Sbjct: 936  DETHAGAPAGLPEMTGRDVLNAEIDVLSIDVSRHLLEHHHRLLAELGATDAHHLQAMHRG 995

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + +A +  S Q      G R+ +VT  + +   +  FF
Sbjct: 996  QQVLVAGVRASTQTPPVPSGKRVIFVTLEDGSGLVDVAFF 1035


>gi|325963431|ref|YP_004241337.1| DNA-directed DNA polymerase III PolC [Arthrobacter phenanthrenivorans
            Sphe3]
 gi|323469518|gb|ADX73203.1| DNA-directed DNA polymerase III PolC [Arthrobacter phenanthrenivorans
            Sphe3]
          Length = 1162

 Score =  643 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/1110 (24%), Positives = 486/1110 (43%), Gaps = 113/1110 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL V +++S   G      +    AAD   A+A TD + L+  ++  +   AAGI P
Sbjct: 2    SFTHLHVSTAFSAHYGVSWPEELAQAAAADGATALACTDRDGLYGTIKHLKACMAAGIDP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS---TAEGYQRLIELVSRMYLLDQGK 126
            I+G        D     + G         +V+L        GY+ L  L+S  +    GK
Sbjct: 62   IVGV-------DLTVFDDDGDHRTQVAGRVVVLARGNNNGAGYRALCRLISDAHARTSGK 114

Query: 127  Q----SVRICLSWLQ------EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
                  V +  + L       +     L +L G  S  + RA               +  
Sbjct: 115  SGGAVPVAVTRAELASRTLDPQTLKPVLAVLVGPHS-DVGRAMGGRRYLRPRTLFKQWLD 173

Query: 177  LFGDRLYVNL------QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                   V                    ++++LA  H++P V TN   + + +     DV
Sbjct: 174  AMPAGTLVAEIVSQLSMPGTPLSTAHAVRMLKLAEEHQVPAVLTNAVRYCAADGAPTADV 233

Query: 231  LMAVAHSTVV---SQKDRPRVTPDHYLKNRSEMVSI-----------FSDLPEALENTVE 276
            L +      +   +++   + T   +LK+ +EM+ +            +DL + +  T  
Sbjct: 234  LDSARTLKSLPELAEEPLLQPTGQGWLKSSAEMLQLGKEIISAAGYGAADLKQLMAQTEA 293

Query: 277  IARRCSFIL-QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
            +A  C            P   E     I ++   EL  +  AG+  R    + A G   +
Sbjct: 294  LADLCRIDPASDMGWKQPVVPEASVIGISQDPHLELVQRCQAGIGRRFPGISGADG---E 350

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
                RL+ EL +I  + FS YFL VA+  +  +   +     RGSGA S+  Y + ++ +
Sbjct: 351  KMLARLEHELGIIRNLGFSSYFLTVAEVSRMIQDMGVR-AAARGSGASSLVNYLIDVSQV 409

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            +PL+  L+FERFL+ DR ++PD DID     R  V   +  ++G ERV  +      +A+
Sbjct: 410  NPLQHDLIFERFLSQDRATLPDIDIDVESAERHNVYHRIFERFGAERVTLMSMQNGYRAR 469

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA--------RLADPS 507
             A+RD G AL M   +V  + K +    A     +A+ +    RE            +  
Sbjct: 470  GAVRDAGLALGMDDGEVGEIAKQLWRFSARKFR-EALQEKPELREFAGRVEQRDMHGNQQ 528

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            +D L++++++L+ L RH S H  G+++GD  L    P+       LP++QF+   ++  G
Sbjct: 529  LDLLVDLTERLDRLPRHISMHPCGVILGDATLLDRTPVQ-PSGLGLPMSQFDKHDMDPMG 587

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGV---------------------------KVDLSL 600
            ++K D LG++  + +  ++  + +                              ++DL+ 
Sbjct: 588  MLKLDVLGVRMQSAMAFAVREIIRIHPSKQEVVAAGGHSSGMDGTGPEYIAENGRIDLNA 647

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            +P DD  T+ L+ +  TLG FQ+ES G R+ +  M P    D+I  +SL+RPGP+  D +
Sbjct: 648  VPLDDEPTFELIRSTHTLGCFQIESPGQRELIGKMAPREFNDLIIDISLFRPGPMKSDMV 707

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   ++G    V  HPL+ P+L+ET GV ++ EQ+++   +++G  L++AD  RRA+ 
Sbjct: 708  RPFLEHRHGFAPEVYPHPLLKPVLQETHGVTVFHEQILRTFDVMTGCGLAKADEFRRALS 767

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
               +  + + +E F   A + G    +   ++E L  FA +GF K+H AA+AV +YQ+AW
Sbjct: 768  --SEAGVSQVEEYFRMHAKEKGFQPDVVDKVWETLKSFASFGFCKAHGAAFAVPTYQSAW 825

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------- 830
            +KTH+P  FLA     +     K +    +AR+  I I+P  +N    +++V        
Sbjct: 826  LKTHHPEAFLAGLWEHDPGMYPK-RLLVAEARRLGIPILPLDINRSKAEYRVEKITSGPD 884

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             G   I  SL  I G+     + I+   A +P+DSL D  +R    ++++  ++ L   G
Sbjct: 885  AGKLGIRLSLNGIYGLSAAELKRIV---AGQPYDSLADLRNR---SRVSKPSIKRLAQLG 938

Query: 890  ALDCFG------YSRMQLLQSLDNIQ-KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            A D          +R  L+Q L  +Q   +            ++   +    + K  L  
Sbjct: 939  AFDSLHREAGGTANRADLVQHLQKLQGSNSGRKGVEVLEGQLSLPLGDVELRNVKPGLPA 998

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             S+ ++      E  ++    S H +D ++P+L ++G+   ++ +    G  + +A + V
Sbjct: 999  LSLVDN---VRAELDLMAVDVSSHLMDSHRPMLNRLGVVTADKLLGLRNGTEVLVAGVRV 1055

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + Q    R G R+ +++  +     ++ FF
Sbjct: 1056 ATQTPPMRGGRRVVFISIDDGTGCIDSVFF 1085


>gi|46203696|ref|ZP_00051135.2| COG0587: DNA polymerase III, alpha subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 538

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/537 (59%), Positives = 421/537 (78%), Gaps = 5/537 (0%)

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
           ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLNP+R+SMPDFDIDFC + R+ 
Sbjct: 2   HDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLNPERVSMPDFDIDFCVEGRER 61

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
           VIRYVQ +YG  +V QIITFG+L A+  LRDVGR L+MPY QVD+L KL+P +PA+PV+L
Sbjct: 62  VIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVLEMPYGQVDKLTKLVPQNPANPVTL 121

Query: 490 -QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            QAI  + + ++A   +P V RL+EIS+KLEGL+RHASTHAAG+VIGDRPL +LVP+YRD
Sbjct: 122 AQAIEGEPKLQQAIQEEPIVARLIEISKKLEGLHRHASTHAAGVVIGDRPLEELVPLYRD 181

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
            ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+   D L QRG++VDL+ IP DD +T
Sbjct: 182 PKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRCCTDLLKQRGIEVDLAQIPLDDPKT 241

Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
           Y  +    T+ +FQ+ES+GMR+AL  MQ D +EDIIALV+LYRPGP+ NI VY  RK G+
Sbjct: 242 YEPMGRGETVAVFQVESAGMRKALCEMQADRLEDIIALVALYRPGPMANIPVYCERKLGR 301

Query: 669 ----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
               E     HP+++P+L+ET G+I+YQEQVM++A++L+GY+L EAD+LRRAMGKKIK E
Sbjct: 302 DAGNEASWYPHPMLEPILRETFGIIVYQEQVMEVAKVLAGYTLGEADMLRRAMGKKIKAE 361

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           MD Q++RF+ G  ++GI +  A  IF+LLAKFADYGFNKSHAAAYA+++YQTA++K +YP
Sbjct: 362 MDAQRDRFVKGCLESGIPQAKANEIFDLLAKFADYGFNKSHAAAYALVTYQTAYLKANYP 421

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
           VEFLAA+MTL++DN +K+ +F QDA++  I + PPSVNT  V F V + RI Y+LAAIKG
Sbjct: 422 VEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPSVNTSGVVFDVKEGRILYALAAIKG 481

Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           VG      I+ A  DKPF  L  F  R++ + +N+R LE+L+ AGALDC    R + 
Sbjct: 482 VGRAAVESIVAARGDKPFKDLACFARRLNPRHVNKRTLENLIAAGALDCIEPDRARA 538


>gi|260579156|ref|ZP_05847047.1| error-prone DNA polymerase [Corynebacterium jeikeium ATCC 43734]
 gi|258602702|gb|EEW15988.1| error-prone DNA polymerase [Corynebacterium jeikeium ATCC 43734]
          Length = 867

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/903 (27%), Positives = 396/903 (43%), Gaps = 104/903 (11%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           E +  F  L   S+Y+ L GA     +++        A+A  D +  + A  F+      
Sbjct: 28  EATTPFAELHACSAYNFLRGASQPEQMVEAARELGLSALACVDRDGFYGAARFATAVA-- 85

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
                         + N  +             + +L    EGY RL  ++S   + D  
Sbjct: 86  --------------ESNADLATVFGAELSLDMPLTVLCKGREGYTRLSRVISDARMADPD 131

Query: 126 KQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
           K SVR   L  L E      ++L                 + A+ +L+       D + V
Sbjct: 132 KDSVRYPSLPQLAEAAGGHWLVLL--------------DWRWADAQLVDL--FGADNVVV 175

Query: 185 NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            LQ      D  R  ++  LA  H L  + ++     + +         A+     ++  
Sbjct: 176 ELQHTMNPADADRNERLHALAVRHGLREIVSSAPTCATPKYSRLAGAKAALRERKDMAAA 235

Query: 244 DRPRVT-PDHYLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
           +         +L++  EM+ +  D   L  A+E +V++A  C+F L + AP LP F   E
Sbjct: 236 EPTTHPVGGSWLRSGEEMLQLAGDCEWLARAVETSVQVAEECAFTLDLVAPNLPHFPVPE 295

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                  E   LR     G   R  Q   +   +       +D EL  I ++ F GYFLI
Sbjct: 296 G----YTEMTWLRAITERGGAQRYGQRGSSAAANQA--WATIDRELETIEQLGFPGYFLI 349

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V D + +  +NNI    GRGS A S   +AL IT +D +   LLFERFL+P+R   PD D
Sbjct: 350 VHDIVSFCHENNI-FCQGRGSAANSAVCFALGITTVDAVASGLLFERFLSPERDGPPDID 408

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           +D    RR+E I+YV ++YG E  AQ+    + + + A RD GRAL     Q+D   +  
Sbjct: 409 LDIESGRREEAIQYVYSRYGRENAAQVANVITYRRRGATRDAGRALGYAPGQIDAWTRNP 468

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              P                         D +  +++++    RH   H+ G+VI DRP+
Sbjct: 469 EQTP-------------------------DAVQRLAEQMLDHPRHLGIHSGGMVICDRPI 503

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDL 598
           +Q+VP          V Q++       GL+KFD LGL  L  L  ++D + A RG +V+L
Sbjct: 504 AQVVPTEWARMEGRSVVQWDKDDCAAVGLVKFDLLGLGMLEALHHAVDQVRAHRGREVEL 563

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             +   + E Y +L+    +G+FQ+ES      L  ++P    D++  V+L RPGPI   
Sbjct: 564 WRLDPTEPEVYAMLSRADAVGVFQVESRAQMSTLPRLKPRTFYDLVVEVALIRPGPIQGG 623

Query: 659 --VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
               Y  R+NG E +   HP ++P L +T G+ ++QEQ+MQ+A   +G+S +EAD LRRA
Sbjct: 624 SVHPYIRRRNGLEPVTFDHPCLEPALTKTLGIPLFQEQLMQMAVDAAGFSGAEADTLRRA 683

Query: 717 M-GKKIKEEMDKQKERFISG-ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           M  K+  ++M++ K+RF  G  +KNGI   +A  +++ +  FA YGF +SH+ ++A + Y
Sbjct: 684 MGSKRSPQKMERLKKRFYQGLEAKNGIRGAVADRLWDKIVAFASYGFPESHSQSFASLVY 743

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831
            +AW K HYP EF  A +  +       +    DAR+  ++++P  VN   V        
Sbjct: 744 YSAWFKYHYPAEFCVALLRAQPMGFYSPQSLLADARRHGVEVLPVDVNASDVQVDAVVSL 803

Query: 832 ----------------------DNRIYYSL---AAIKGVGTTTARHIMEASAD-KPFDSL 865
                                   +I   L     +KG+    A  I+EA      F S+
Sbjct: 804 MTPPRTNRPTGVHGLGRGTGEPVGQIRLGLSGAGGVKGISAEVAERIVEARERIGRFTSV 863

Query: 866 EDF 868
           ED 
Sbjct: 864 EDL 866


>gi|251770815|gb|EES51404.1| DNA-directed DNA polymerase [Leptospirillum ferrodiazotrophum]
          Length = 1109

 Score =  640 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/1005 (30%), Positives = 490/1005 (48%), Gaps = 99/1005 (9%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQKA 62
           E S  F HL  H+ YS+L+G   +  ++++         AITD  NLF+    L   + A
Sbjct: 3   EVSQKFSHLHTHTQYSILDGMNKIPKLVEQSVESGIGGFAITDHGNLFALPEVLREQKTA 62

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              G++  +GC+  +   D L+   +  T       +  +     G + L++L ++ Y  
Sbjct: 63  NERGVKIAMGCEFYVT-DDRLQKNKESDT-----YHLTAIAKNNVGLESLMKLSTKAYTE 116

Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                  RI L  L E    GLI+L+G   G + +A    +   A   +  +  +FGD  
Sbjct: 117 G-FYSHPRIDLDLLSE-HKNGLIVLSGCLGGQVAQALKDGNKAKAMDLVGAYHDIFGDNY 174

Query: 183 YVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           ++ +      ++    + + +++    +  V T +  +  +E Y AHD  +A+   +++S
Sbjct: 175 FLEVMPLEIREQIDVNAAISEISKRTGIETVTTCDCHYQKKEHYAAHDTWLAIQTGSLLS 234

Query: 242 QKDRPRVTPDH-YLKNRSEMVSIF--SDLPEA-LENTVEIARRCSFILQVHAPILPRFIE 297
             DR R + D  Y +   E++     + L E+ +  T  I  R S      A  +P    
Sbjct: 235 DPDRFRFSTDRAYFQTPEEVLENSKGAGLDESSMLRTSMIMERISGYEIDKALKMP---- 290

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                + +    +LR  A +GL+ +          +  DYR+RL++EL+VI ++ F  YF
Sbjct: 291 -----VIENAHEKLREMAFSGLQKKGL-------LNRPDYRERLEYELDVIGKLGFDSYF 338

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           L+V   IQ AK N  P GPGRGS AGS+  + L ITD+DP++  L+FERFLNP R+S PD
Sbjct: 339 LLVQKIIQIAKNNGTPTGPGRGSAAGSLVVWVLGITDLDPIKHGLIFERFLNPARVSPPD 398

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D+D     R  VIR +  +YG  RVA I+T G    K  L+DV R   + +++ +    
Sbjct: 399 IDLDIGTKGRGGVIRSIVEEYGTARVATIMTLGLALDKMVLKDVMRTEGISFAEAN---- 454

Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                      ++ + D         A P+   +LE ++ L G  R+  THAAGIVI   
Sbjct: 455 ------VATTGMKTLDD------FSPATPTEHEVLERAKVLNGTVRNIGTHAAGIVISPE 502

Query: 538 PLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
           PL   VP+        + +   Q +MK +++ G IK D LGLK L +L+           
Sbjct: 503 PLYGKVPLMSSKVAEENGILQLQLDMKAVDEWGYIKVDVLGLKELDILKDLSKRTGADPK 562

Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESS-GMRQALEGMQPDCIEDIIALVSLYRPG 653
           + +       D +T  +++   T G+FQL +S GM++ L  M+ D   D+ A +SL+RPG
Sbjct: 563 QEEFMH----DKDTLEMISVGETTGVFQLGTSEGMKRMLRDMKCDSFNDVCAALSLFRPG 618

Query: 654 PIDNIVV--YNNRK---NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
           P+++ +V  Y   K      E I S++P  D +L ET GV IYQEQ+M++ ++L+G+ + 
Sbjct: 619 PLESGIVAQYIRNKELSKNGEPIPSLNPRTDTLLAETYGVPIYQEQIMEMGKILAGFDMK 678

Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
           EAD+LR+AMGKK  EEM K KE+++SG  KNGIS+  A+ +FE +  F+ YGFNKSH+AA
Sbjct: 679 EADLLRKAMGKKKPEEMAKMKEKWVSGCLKNGISEKEALELFEKVEHFSGYGFNKSHSAA 738

Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV------- 821
           YA+ S + AW K HYP  + AA ++ E ++VE      + A++  I ++PP +       
Sbjct: 739 YAITSMKMAWYKCHYPAHYWAAKISHE-NDVESRGVMAESAKREGIVVVPPRICVEENTL 797

Query: 822 -------NTPCVDF--------KVGDNRIYYSLAAIKGVGTTTARHI-MEASADKPFDSL 865
                  N     +          G++RI   +  +KGV    A  + +E + + PF S+
Sbjct: 798 FKKHTGNNQETSHYPDLCAVIDHNGEDRIVLGIETLKGVSEGVAEALSIETNLEGPFKSM 857

Query: 866 EDFCSRVDSKKL------NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV---- 915
           +D   R+  K+       N+R + +L   G  D     R  +L  +++  K    +    
Sbjct: 858 QDVYDRLVVKREDRPPILNKRSMVALTAVGFFDPIYKDRKAVLSWIESKYKEPGSIPCLE 917

Query: 916 --EKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956
             ++ RT K   IF    EK     +   E  S +  +V  E ++
Sbjct: 918 PPKRKRTKKQAEIFTSQEEKKVVQQERIAETTSPKKKNVTIETDK 962


>gi|226327033|ref|ZP_03802551.1| hypothetical protein PROPEN_00894 [Proteus penneri ATCC 35198]
 gi|225204251|gb|EEG86605.1| hypothetical protein PROPEN_00894 [Proteus penneri ATCC 35198]
          Length = 584

 Score =  640 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/589 (40%), Positives = 346/589 (58%), Gaps = 22/589 (3%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P F+HL+VHS YS+++G      ++ K+A+   PA AITD  NL   ++F   A  AGI+
Sbjct: 4   PRFIHLRVHSDYSMIDGLAKTGPLVKKVASLGMPAFAITDFTNLCGLVKFYGAAHGAGIK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PIIG  + ++ +                  + +L     GYQ L  L+S  Y    G   
Sbjct: 64  PIIGADVYLETE----------LLGDEYAHLTILARNNVGYQNLTLLISEAYKHGYGAAG 113

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I   WL     EGL++L+GG  G + +     +  + ++ L  ++  F D  Y+ L R
Sbjct: 114 PTIKQEWLTTY-KEGLLLLSGGRMGDVGKFLLRGNRALVDQCLEYYQTHFPDSYYLELIR 172

Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
               D      + V LA    LP+VATN+  FL  +D++AH++ +A+     +S   RP 
Sbjct: 173 TGRTDEETYLHEAVALASEKGLPVVATNDVCFLDSDDFDAHEIRVAIHDGFTLSDPKRPK 232

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +P  Y++   EM  +F+D+PEALEN+VEIA+RC+  +++    LP+F           
Sbjct: 233 NYSPQQYMRTEEEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPTGNM-----S 287

Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 288 TEDFLVKKSQEGLEERLAFLFPDPEERKKRRPEYDERLDIELKVINQMGFPGYFLIVMEF 347

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           IQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 408 MEKRDRVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 468 GMTLE-KAFAAEPQLPEIYEADEEVKSLIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
           P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R
Sbjct: 527 PLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINAR 575


>gi|260907414|ref|ZP_05915736.1| DNA polymerase III, alpha chain [Brevibacterium linens BL2]
          Length = 1122

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/1094 (26%), Positives = 465/1094 (42%), Gaps = 102/1094 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PSF HL V S+++   G      ++         A AITD + +F A+   +   AAGI 
Sbjct: 2    PSFTHLHVASAFTAHHGTAHPETLVAAAVVAGADAAAITDHDGIFGAIRHVRACLAAGID 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY-------- 120
            PI+G  L          T        TV  +    +   G+  L+ L+S  +        
Sbjct: 62   PIVGANLQ---------TRDDNGQLSTVTVLAHGHNHGAGWAGLVRLISAAHSPRRRQHT 112

Query: 121  LLDQGKQSVRICLSWLQ-----EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            L     +S  I           E G    ++L  G    + RA        A   L  ++
Sbjct: 113  LHGTAHRSAWITPDQAPAFLSGETGPVATVLL--GPGSDVGRAVLNGDRPRARALLEAWE 170

Query: 176  KLFGDRLYVNLQRHR-----GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            +     + V +  H           + + ++QLA    +P+V TN   FL  +D    DV
Sbjct: 171  RRLPGGIAVEIVCHHTRPGTAASLQQAADMLQLARVQGVPVVLTNVVRFLRPDDAITGDV 230

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF-----------SDLPEALENTVEIAR 279
            L + A    +        +   +LK  S M  +             D  + L +T  +A 
Sbjct: 231  LDSAAFLLPLGA--FEPHSAQAWLKPASVMHDLAYRICDYAGLRRDDAIDLLAHTERVAD 288

Query: 280  RCSFILQVH-APILPRFIEKECDDI-QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
             C    +       P+  E E   +   +    LR +  A +  R      A G   +  
Sbjct: 289  WCRLGPETDLRWRHPKVPELEAIGLAGADPVRVLRQRCEAAITDRYPH---AYGTGLRRV 345

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            R RL  EL  I    F  YFL VAD +   +   + V   RGSGAGS+  + L I+ +DP
Sbjct: 346  RDRLSDELATIGGFGFESYFLTVADVVDLIRDMGVRV-QARGSGAGSLVNHLLRISAVDP 404

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
            +  SLL ERFL   R ++PD DID    RR ++ R V ++YGH RV  +    + +A+ A
Sbjct: 405  IEHSLLSERFLGNARSTLPDIDIDVESARRHDIYRAVFDRYGHHRVTLLSMQSTYRARGA 464

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA---DPSVDRLLEI 514
            +RD G AL +  +Q+DR+ K I          QA+      R+       D  +D L+++
Sbjct: 465  VRDAGAALGLDLAQIDRIAKNIWRFNPADFR-QALETKPELRDVAAQVKTDAQLDLLVDL 523

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            + +L+ L RH S H  G+++GD  L  L          LP++QF+   I+ AGL+K D L
Sbjct: 524  TARLDRLPRHISMHPCGVILGDSDLLSLTATQPSGM-GLPMSQFDKDDIDDAGLLKLDIL 582

Query: 575  GLKTLTLLQKSLDFLAQRG--------------------VKVDLSLIPFDDHETYHLLTT 614
            G++  + +  +L  +A+                       +VDL  IP DD  T+ L+ +
Sbjct: 583  GVRMQSSIAHTLTEIARVNGATAAVEGRLPVDAPYVAADGRVDLEQIPHDDEPTFELIRS 642

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIV 672
              TLG FQ+ES G R+ L  MQPD  ED++A +SL+RPGPI   +   + N K G   I+
Sbjct: 643  THTLGCFQIESPGQRELLGKMQPDQYEDLVADISLFRPGPIQANMVAPFINAKLGYAPII 702

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP   P L ET GV+IY EQ+M++       SL+EAD +RRA+         + + R 
Sbjct: 703  YLHPRFRPFLAETYGVLIYHEQLMRVLADCMDISLAEADEIRRALATDSAAIEARFRART 762

Query: 733  ISGASKNG---ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                 + G           I+  +A F  +GF K+H A++A+ +YQ+AW+K HYPVEFL 
Sbjct: 763  AGRVDERGRRLFRDREIDRIWTNVAAFGSFGFCKAHGASFALPTYQSAWLKQHYPVEFLT 822

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKG 844
              +  +   +   +    +AR+  I ++P  +N     ++V     G   I +S   I G
Sbjct: 823  GILEHDP-GMYPRRLLVAEARRLGITLLPIDINASSDQYRVEQVSPGIKAIRFSFRDISG 881

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF------GYSR 898
            +       I++    +P+ S+ D   R    + +R ++  L   GA D           R
Sbjct: 882  ITDVELTRILD---GQPYTSITDLYERA---RPSRPLMMRLARIGAFDSLTRDEHGQAHR 935

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              ++  +  +                 +F  E       +        ++  R   +  V
Sbjct: 936  GGIIAYVRQLTARTHKKAVMPQPNQVPLFGDEV------LVDAAVPDPSAEERIATDLEV 989

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            L     GH +D+Y+P+L  +G+    E +    G  + +A + V+ Q    R G R  ++
Sbjct: 990  LSTEVDGHVMDLYRPMLEGLGLTHASELLGLRSGTEVLVAGVRVATQTPPMRSGRRTVFI 1049

Query: 1019 TFSEPAKEYEANFF 1032
            +  +     +  FF
Sbjct: 1050 SLDDGTGCIDVTFF 1063


>gi|148254432|ref|YP_001239017.1| error-prone DNA polymerase [Bradyrhizobium sp. BTAi1]
 gi|146406605|gb|ABQ35111.1| error-prone DNA polymerase, DnaE-like protein [Bradyrhizobium sp.
           BTAi1]
          Length = 1196

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/879 (25%), Positives = 377/879 (42%), Gaps = 70/879 (7%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +   P +  + V +++S L G     + + + A     AI I D N L   +    +   
Sbjct: 1   MTPIP-YAEIGVTTNFSFLHGGSHPQDYVHQAAEYGLTAIGIADHNTLAGIVRAYSELSN 59

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR----MY 120
             +           +                 P I++       Y RL +L++R      
Sbjct: 60  DRLSYKPKLIYGARL-----------VFSCGTPDILVYPRDRAAYGRLCQLLTRGKRGSD 108

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
           L    K   R+  + L +     L++L                       L   K    D
Sbjct: 109 LDRVAKGDCRLSFADLFDFIAGQLLVLMPPHRF---------DEDALGNILARLKDSRAD 159

Query: 181 RLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-T 238
            +++     +RG DR R +++ +LA + ++PL+ATN+ L+   +     DVL  +    T
Sbjct: 160 GVWLAASLLYRGDDRRRLARLARLAASSKVPLIATNDVLYHHPQQRMLQDVLTCIREKAT 219

Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           + S   R +   + +LK   EM  +F D P+A+  T+    R  F L       P     
Sbjct: 220 IESIGRRLQANAERHLKPGHEMARLFRDYPDAITETIRFTDRIVFSLDQLKYQYPDEPVP 279

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                 K  +  L +   AG +         +       R  L+ EL +IA + ++ YFL
Sbjct: 280 PG----KTAQGHLEDLTWAGAKTYFGDDLDDR------LRAVLNKELALIAELNYAHYFL 329

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V D +++A+   I +  GRGS A S   Y L IT +DP +  LLFERF++ +R+  PD 
Sbjct: 330 TVHDIVRYARSQGI-LCQGRGSAANSAVCYVLGITSVDPTKIDLLFERFISKERLEPPDI 388

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DF   RR+EV++YV  +YG  R A I T    + ++A+RDVG+AL +       L   
Sbjct: 389 DVDFEHSRREEVMQYVYRRYGRHRAAIIATVIHYRPRSAIRDVGKALGLTEDVTAVLADT 448

Query: 479 IPNDPAHPVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
           +       +S      D + R+A L  A+P + R +E++ +L    RH S H  G V+  
Sbjct: 449 VWGSWGDGLS------DIQVRQAGLDPANPMIRRAVELAAELINFPRHLSQHVGGYVLTQ 502

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA----QR 592
             L   VP+      D    +++   ++   ++K D L L  LT ++K  D +A    +R
Sbjct: 503 DRLDSYVPIGNAAMDDRTFIEWDKDDVDALSMMKVDVLALGMLTCIRKCFDLIADHKGRR 562

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            V  D+     DD+E Y +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 563 YVLADIKSE--DDNEVYQMLQRGESLGVFQVESRAQMNMLPRLKPRTFYDLVIEVAIVRP 620

Query: 653 GPI--DNIVVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLL 702
           GPI  D +  Y  R+N  EK+    P         +  +L +T GV ++QEQ M+IA   
Sbjct: 621 GPIQGDMVHPYLRRRNRLEKVTYPSPSPDHGPADELYKVLHKTLGVPLFQEQAMRIAIEA 680

Query: 703 SGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
           + +S  EA+ LRRAM   +    +   +E+ +S     G     A + F+ +  F  YGF
Sbjct: 681 AKFSPEEANGLRRAMATFRNVGTIGSYEEKMVSSMIARGYDPAFAKSCFDQIKGFGSYGF 740

Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            +SHAA++A + Y ++W+K  +P  F  A +  +        +   DAR+  ++I    V
Sbjct: 741 PESHAASFAQLVYVSSWLKCFHPDAFCCALLNSQPMGFYAPAQIVGDARKNGVEIRNIDV 800

Query: 822 NTPCVDFKVG-----DNRIYYSLAAIKGVG--TTTARHI 853
           +    D  +         +      I G          I
Sbjct: 801 SHSFADNTLEETDGKYCAVRLGFRQIDGFRWIDRDEERI 839



 Score =  130 bits (328), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 61/181 (33%), Gaps = 15/181 (8%)

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            I++A A  PF SLEDF        L +R L  L  A A    G  R   L ++  +    
Sbjct: 933  IVKARARGPFTSLEDFAR---DTALPKRALLLLADADAFRSLGLDRRAALWAVRRLPDDV 989

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
                         +F             +         +   + + +     GHP++  +
Sbjct: 990  ----------PLPLFEAAIAREQPDEGAKPLPEMPLPEQVVADYQTIRLSLKGHPMEFLR 1039

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                  G+    +        +IR A +V+ +Q+  + KG  + ++T  +         +
Sbjct: 1040 RRFTAEGVLACRDVNDANDRRHIRCAGVVLVRQRPGSAKG--VVFMTLEDETGIANIVVW 1097

Query: 1033 P 1033
            P
Sbjct: 1098 P 1098


>gi|219883035|ref|YP_002478199.1| DNA polymerase III, alpha subunit [Arthrobacter chlorophenolicus A6]
 gi|219862041|gb|ACL42382.1| DNA polymerase III, alpha subunit [Arthrobacter chlorophenolicus A6]
          Length = 1401

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 295/1166 (25%), Positives = 486/1166 (41%), Gaps = 213/1166 (18%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  H+ +S L+G   + ++  + A   Q A+AITD  +L  A  F++   AAGI+P
Sbjct: 2    AFVHLHNHTEHSSLDGLARIKSVAKRAAELGQTAMAITDHGSLAGAWRFTKACKAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKM----------------TNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
            IIG ++ + + D  +                   +G T       + LL    +G++ L+
Sbjct: 62   IIGIEIYMSIGDRFERNSEIVDRNDDTTADADDGKGDTKEKRYEHLTLLARNEQGWKNLL 121

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------------- 156
             L ++    +      RI    L+E   EGLI+L+G  +GP+                  
Sbjct: 122  ALHNKA--EESYWYKPRIDYKLLKE-HGEGLIILSGCLAGPVAGPLSRAAATKTASEQAA 178

Query: 157  ----------------------RAFFFNSSQVAEKRLLTFKKLFG----DRLYVNLQRHR 190
                                  +A    S++ A +       L      + +Y+ +  H 
Sbjct: 179  AGALAAREANEEDEASKLDAEAQASLAKSAEFAAEARKNLDTLIDCVGKENVYLEIMYHS 238

Query: 191  GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               ++     + QL+  +E+P+V TN+  +  E D   H+  +AV     +    R +  
Sbjct: 239  IEAEQSVLKPIGQLSREYEIPMVVTNDCHYEEEGDAHHHEGFLAVGSKKGLDDPARFKFN 298

Query: 250  P-DHYLKNRSEMVSI---FSDLPEALENTVEIARRCSFI-LQVHAPILPRFIEKECDDIQ 304
               +Y+K+ +EM+ I        +A   T  IA RC    +      LP++   E     
Sbjct: 299  GSGYYVKSEAEMLDIKPGSKSWADACAMTQVIADRCDDQVIPTPHQRLPKYPLPEGFT-- 356

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             +    L+     G   R           +Q+ + RL  EL++I  M F  YFLI+ D I
Sbjct: 357  -DSNVYLKQLVKEGAIARYG------SPLSQEVKDRLKTELDIIKDMGFPDYFLIMWDVI 409

Query: 365  QWAK--------------KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
             W +              K  I VGPGRGS AGS  +Y LTI  +DPL  +LLFERFL P
Sbjct: 410  NWCRSDAPIEFDNPDAPRKKPILVGPGRGSAAGSAVSYCLTIVGLDPLYNNLLFERFLEP 469

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM--P 468
             R  MPD D+DF + RRDEV  Y+  ++G   VA+I TFG   +KAA++D  R L+   P
Sbjct: 470  GRAGMPDIDVDFEKGRRDEVFAYLGYRWGKGNVARIGTFGVALSKAAIKDAARILKPSGP 529

Query: 469  YSQVDRLCK--------------------------------------LIPNDPAHPVSLQ 490
              ++    K                                      L+P          
Sbjct: 530  SEEIKAQAKEFFAAGDRGKGASLLREAEKAATERATQIMRLGNKMSDLVPASGEKAYDFD 589

Query: 491  AIADDSR-----FREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             +AD        FR+           +LE+++  EG+ ++ S HA G V+   PL  LVP
Sbjct: 590  QLADPKDQAGQAFRDLVEEAGQDALDILEMARSFEGVIKNESIHACGFVVSPEPLDDLVP 649

Query: 545  MYRDVRSDLP------VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
            +     +         V  ++   +E  G +K D LGL  L ++  +L+ +      K+ 
Sbjct: 650  LRWASHAADADPAAPRVICWDGPEVEDYGFLKMDILGLMNLDIVATALENIEMTTGEKLT 709

Query: 598  LSLIPF----DDHET---YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            +  +P      D +    + L+    T G+FQ+ES+GM +  + + P+ + DI A+V+L+
Sbjct: 710  MDDVPHPDTQGDPKVDAAFALIAAGNTGGVFQMESAGMVKIAQDVVPESLTDISAIVALF 769

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVS--------IHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            RPGP+   V   Y  RKNG E++              I  +L +T GV ++QE +M++  
Sbjct: 770  RPGPLAAKVPDRYAARKNGLEEVDYNQFTADKTEQEWIAKVLGDTYGVFVFQESLMRLGT 829

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK-----------TIAVNI 749
            ++SG+  S+  VLR+A+GKK  ++M +  E   +GA +    +             A ++
Sbjct: 830  VISGFDASQRSVLRKAVGKKDAKKMAEVGEMLAAGAEQEFFDEDGAMISPKFSPKTAAHM 889

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            FEL+   A Y FN SH+AAYA +++ TA++K ++PVE+ AA + +   + +++  F    
Sbjct: 890  FELMKGSASYLFNASHSAAYAQLAFVTAYLKANWPVEYAAAILAIADKDDKRMNAFWS-L 948

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
            +   I ++ P +N         +  +   LA +K VG      + E   + PF +L D  
Sbjct: 949  KTDGITVLAPDINLSLARTAPVNGSVQMGLAEVKEVGVAGHYIVAERQKNGPFKNLHDVL 1008

Query: 870  SRVDSKKLN--------RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            +RV     N           ++ L+ AGALD FG  R+ LL +L    K           
Sbjct: 1009 TRVTVPGKNGAEPTKLPVGAIQGLIEAGALDSFGP-RLGLLMTLRAAHKTEL-------- 1059

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL-----R 976
                              L   +  +       +++ LG     HPL   K  +      
Sbjct: 1060 ------------------LPIDAEWSDVEESTRQRQRLGVSLGTHPLQSLKDEILAWEGP 1101

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVV 1002
              G       +A   G  +    ++ 
Sbjct: 1102 AGGKATPLHRIADENGEAVLTVGVIS 1127


>gi|257458194|ref|ZP_05623348.1| DNA polymerase III subunit alpha [Treponema vincentii ATCC 35580]
 gi|257444488|gb|EEV19577.1| DNA polymerase III subunit alpha [Treponema vincentii ATCC 35580]
          Length = 744

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 248/622 (39%), Positives = 362/622 (58%), Gaps = 6/622 (0%)

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFD+DFC +RR EVI YV+ KYG E V QIITFG+L+ KAA++DVGR L++P  +V+ 
Sbjct: 1    MPDFDVDFCFERRQEVIDYVRRKYGDESVGQIITFGTLKPKAAIKDVGRVLEIPLGEVNA 60

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            + K++P+DP      +A AD     E R +DP    L  I++KLE L R+ S HAAGIVI
Sbjct: 61   ITKMMPSDPKLTFE-KAFADVPELAEMR-SDPRYTELFSIAEKLEDLNRNTSLHAAGIVI 118

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-- 592
            G   L+  VP+Y+D ++    +QF M  IE  GL+K DFLGLKTLTL++ + D + +R  
Sbjct: 119  GKTKLTDYVPLYKDSKTGKTASQFTMDLIEDCGLVKMDFLGLKTLTLIKHTEDLIKKRGG 178

Query: 593  -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                  +  I   D  T+ +L    +  +FQ ES GM+  L+  +PD IED+IAL +LYR
Sbjct: 179  EYANFSIEQIDEQDAATFKMLGEGKSAAVFQFESQGMQNILKRAKPDKIEDLIALNALYR 238

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+  I  +   K    KI    P ++ +L ET GVI+YQEQVMQ+AQ + GYSL +AD
Sbjct: 239  PGPMAYIDQFIESKFDSSKIQYPDPCLEDILSETYGVIVYQEQVMQVAQRIGGYSLGQAD 298

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK KE M+K+K RFI GA KN   +  A  IFE+L  FA YGFNKSHAAAY+V
Sbjct: 299  LLRRAMGKKKKEVMEKEKTRFIEGAVKNNFREKDADRIFEILIPFAGYGFNKSHAAAYSV 358

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K ++P EF+AA++T E+ + +K+ ++  +A +  + +  P +NT    F V 
Sbjct: 359  LAYQTAYLKANFPAEFMAANLTNEITSTDKLPEYISEANKMGLALHAPDINTSEEYFSVY 418

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            +  I + L  IKGVG   AR I+    A  P+ S  DF  R+D   +N++ LE L+  G 
Sbjct: 419  EGDIVFGLLGIKGVGEQAARDIVAERTAHGPYKSFIDFLDRLDLHTVNKKNLEVLIKTGC 478

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D  G +R +LL +L+    ++   +        ++F           T ++ +      
Sbjct: 479  FDKLGQNRSELLDNLEAAMAFSAQKKAGSAVGQTSLFEDTGIKEFSDFTFKQVNDLPQKE 538

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            +   E+ ++GFY SGHPLD YK  + +             +     +  M+   +  +T+
Sbjct: 539  KLRIEKELMGFYISGHPLDEYKKAIDRSATLELINFRRAQKEKLYTIVGMITGIRPYQTK 598

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G  +G+ TF +     +  FF
Sbjct: 599  NGKWMGFGTFEDRTGTIDLTFF 620


>gi|255928078|gb|ACU41697.1| gp202 [Mycobacterium phage LRRHood]
          Length = 1172

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 256/1110 (23%), Positives = 476/1110 (42%), Gaps = 118/1110 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H   S+L+G      +  +       ++AITD +++     F +   AAG++P++G 
Sbjct: 49   LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVLGA 108

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +    +  N+  + + KT       IVLL     G + L  L S  Y  +Q  +  ++  
Sbjct: 109  EQRWML--NIADSRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKPQLDP 166

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ------ 187
              L +   +GL    G            +   +A +       +FGD  Y  L       
Sbjct: 167  GLLMQY-RDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTWQFIN 225

Query: 188  RHRGYDRYRESQV-------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                  +   +++       V+LA    +PLV  N++ +  E  ++ H  +  ++  +  
Sbjct: 226  PVSPEQQALNAKMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMSTGSWK 285

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIF-------SDLPEALENTVEIARRCSFILQVHAPILP 293
              +   R     ++ N  E+           S + EA+ N+  IA +C+  +      +P
Sbjct: 286  KDQHEERGHAADWMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKLLAMP 345

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            R    + +D         R     G +       + KG     YRQRL++E  +I     
Sbjct: 346  RLHATDAEDAAA-----FRRAIEEGFKR----FVVDKGLPEDVYRQRLEYEAKLIIDKNM 396

Query: 354  SGYFLIVADFIQWAKKNNIP-------------VGPGRGSGAGSVTAYALTITDIDPLRF 400
            +GYF +VAD++  A+                   GPGRGS  GS+  Y + IT IDP+++
Sbjct: 397  AGYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIKY 456

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             L+FERF+NPDR   PD D+DF + ++  V +Y+  +YG   V  I T    + +  L+D
Sbjct: 457  DLMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQD 516

Query: 461  VGRALQMPYSQVDRLCKLI-------PNDPAHPVSLQAIADDSRFREARLA-----DPSV 508
            + RA  +P+ ++ ++  L+       P +    +      D   + E          P  
Sbjct: 517  LCRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPED--EDPPTWGEVLQEIGGELAPYA 574

Query: 509  DR---LLEISQKLEGLYRHASTHAAGIVIGDRPLS-QLVPMYRDVRSDLPVTQFNMKWIE 564
             +   L  + +++  + R    H AG+++   P+   L+P  R   +D+  TQF+M  +E
Sbjct: 575  KKYPDLFNLMEQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDMYELE 634

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS------------------LIPFDD 605
            + G +K D L  K L +L  + D + +R  V +D                        +D
Sbjct: 635  ELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVIALNEERYLND 694

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI---DNIVVYN 662
               Y  +    T G+FQ+ +    +     +P  + D+  L S+ RPG       +  Y 
Sbjct: 695  PAIYDQIDRGQTAGLFQVNTPAGTKLAMRFKPRSVVDMADLASINRPGVTRVPGLLDKYI 754

Query: 663  NRKNGKEKIVSIHPLIDPMLKE-----TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
             R++G+E++   HPL++ +        T G+++YQEQ+++ A+ L+G++  EA+ LR+ +
Sbjct: 755  ERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAERLRKGI 814

Query: 718  GKKIKEEMDKQKERFISGASKN------GISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            GKK  E +++ + +F+ G   N      G ++ +A  I++ L     Y FNKSH   YA+
Sbjct: 815  GKKKMEIINELEPKFLDGCMANSEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHGVGYAL 874

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
               Q AW+K +Y  EF+   + +     +K  +F ++ RQ    ++PP VN     F + 
Sbjct: 875  QPCQEAWVKHYYFDEFITGCLVIH---TDKTIRFLRECRQRKRAVLPPDVNQSGAGFTLT 931

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR-VLESLVFAGA 890
            D  I + L  I G+G      I+   A++PF  L+DF +R       ++ V+++L+  GA
Sbjct: 932  DEGIRFGLTDISGIGDAAMPDIL---ANRPFKDLDDFLARASKSGGAKKGVVDALIKVGA 988

Query: 891  LDCFGYSRMQLLQSLDNIQK----YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             D  G  R  +L+ +   ++      +W + +   +   I A  +    D      ++ E
Sbjct: 989  FDFTGEHRQVMLEKVYRHRRGLSAPVKWAKMSLDEQVAEIAAKRRVKPED---YPVYNFE 1045

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +     + E  +LG + S  P+  Y  ++    I+   +      G+   +   +V  + 
Sbjct: 1046 DPQFIHDLEVEMLGTFVSYDPMAKYARMIDGECIRHPMDYDDFEPGDRFCVGGKLVKART 1105

Query: 1007 KKTRKGSRIGWVTF----SEPAKEYEANFF 1032
             + + G ++ ++       +    +E   F
Sbjct: 1106 HRQKNGKQMAFLAVHWNEED----FEILAF 1131


>gi|203457520|ref|YP_002224866.1| gp201 [Mycobacterium phage Rizal]
 gi|197312048|gb|ACH62405.1| gp201 [Mycobacterium phage Rizal]
          Length = 1162

 Score =  635 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 255/1110 (22%), Positives = 475/1110 (42%), Gaps = 118/1110 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H   S+L+G      +  +       ++AITD +++     F +   AAG++P++G 
Sbjct: 39   LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVLGA 98

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +    +  N+  + + KT       IVLL     G + L  L S  Y  +Q  +  ++  
Sbjct: 99   EQRWML--NIADSRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKPQLDP 156

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ------ 187
              L +   +GL    G            +   +A +       +FGD  Y  L       
Sbjct: 157  GLLMQY-RDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTWQFIN 215

Query: 188  RHRGYDRYRESQV-------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                  +   +++       V+LA    +PLV  N++ +  E  ++ H  +  ++  +  
Sbjct: 216  PVSPEQQALNAKMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMSTGSWK 275

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIF-------SDLPEALENTVEIARRCSFILQVHAPILP 293
              +   R     ++ N  E+           S + EA+ N+  IA +C+  +      +P
Sbjct: 276  KDQHEERGHAADWMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKLLAMP 335

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            R    + +D         R     G +       + KG     YRQRL++E  +I     
Sbjct: 336  RLHATDAEDAAA-----FRRAIEEGFKR----FVVDKGLPEDVYRQRLEYEAKLIIDKNM 386

Query: 354  SGYFLIVADFIQWAKKNNIP-------------VGPGRGSGAGSVTAYALTITDIDPLRF 400
            +GYF +VAD++  A+                   GPGRGS  GS+  Y + IT IDP+++
Sbjct: 387  AGYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIKY 446

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             L+FERF+NPDR   PD D+DF + ++  V +Y+  +YG   V  I T    + +  L+D
Sbjct: 447  DLMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQD 506

Query: 461  VGRALQMPYSQVDRLCKLI-------PNDPAHPVSLQAIADDSRFREARLA-----DPSV 508
            + RA  +P+ ++ ++  L+       P +    +      D   + E          P  
Sbjct: 507  LCRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPED--EDPPTWGEVLQEIGGELAPYA 564

Query: 509  DR---LLEISQKLEGLYRHASTHAAGIVIGDRPLS-QLVPMYRDVRSDLPVTQFNMKWIE 564
             +   L  + +++  + R    H AG+++   P+   L+P  R   +D+  TQF+M  +E
Sbjct: 565  KKYPDLFNLMEQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDMYELE 624

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV------------------DLSLIP-FDD 605
            + G +K D L  K L +L  + D + +R                       L+     +D
Sbjct: 625  ELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVITLNEERYLND 684

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI---DNIVVYN 662
               Y  +    T G+FQ+ +    +     +P  + D+  L S+ RPG       +  Y 
Sbjct: 685  PAIYDQIDRGQTAGLFQVNTPAGTKLAMRFKPRSVVDMADLASINRPGVTRVPGLLDKYI 744

Query: 663  NRKNGKEKIVSIHPLIDPMLKE-----TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
             R++G+E++   HPL++ +        T G+++YQEQ+++ A+ L+G++  EA+ LR+ +
Sbjct: 745  ERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAERLRKGI 804

Query: 718  GKKIKEEMDKQKERFISGASKN------GISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            GKK  E +++ + +F+ G   N      G ++ +A  I++ L     Y FNKSH   YA+
Sbjct: 805  GKKKMEIINELEPKFLDGCMANPEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHGVGYAL 864

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
               Q AW+K +Y  EF+   + +     +K  +F ++ RQ    ++PP VN     F + 
Sbjct: 865  QPCQEAWVKHYYFDEFITGCLVIH---TDKTIRFLRECRQRKRAVLPPDVNQSGAGFTLT 921

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR-VLESLVFAGA 890
            D  I + L  I G+G      I+   A++PF  L+DF +R       ++ V+++L+  GA
Sbjct: 922  DEGIRFGLTDISGIGDAAMPDIL---ANRPFKDLDDFLARASKSGGAKKGVVDALIKVGA 978

Query: 891  LDCFGYSRMQLLQSLDNIQK----YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             D  G  R  +L+ +   ++      +W + +   +   I A  +    D      ++ E
Sbjct: 979  FDFTGEHRQVMLEKVYRHRRGLSAPVKWAKMSLDEQVAEIAAKRRVKPED---YPVYNFE 1035

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +     + E  +LG + S  P+  Y  ++    I+   +      G+   +   +V  + 
Sbjct: 1036 DPQFIHDLEVEMLGTFVSYDPMAKYARMIDGECIRHPMDYDDFEPGDRFCVGGKLVKART 1095

Query: 1007 KKTRKGSRIGWVTF----SEPAKEYEANFF 1032
             + + G ++ ++       +    +E   F
Sbjct: 1096 HRQKNGKQMAFLAVHWNEED----FEILAF 1121


>gi|188524382|ref|ZP_03004409.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 12
            str. ATCC 33696]
 gi|195659745|gb|EDX53125.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 12
            str. ATCC 33696]
          Length = 969

 Score =  635 bits (1639), Expect = e-179,   Method: Composition-based stats.
 Identities = 305/1008 (30%), Positives = 497/1008 (49%), Gaps = 100/1008 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F++L VHS YSLL  ALS+++++     + QP + +TD NN++  +EF  KA A  + PI
Sbjct: 2    FINLNVHSYYSLLNSALSIDDLIQHALDNNQPYVCLTDLNNMYGCIEFYDKAKAHNLIPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + +                     ++V       GY +LI+  S +           
Sbjct: 62   IGLEFEY-----------------QNTTLVAYAKNYNGYLKLIKWSSWIMTNTTF----- 99

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                 +QE   + +I+      G +                     +F +  +   Q   
Sbjct: 100  ----IIQEDFDDLIIV---CKKGGL---------------------VFENPNFYQAQNQN 131

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              +                  +A  +  +  E D      ++A+ +   +          
Sbjct: 132  ASNA-----------------IALQSVFYAQENDKTVFLAMLAIKNDLKLDDFIDCHEFD 174

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +Y  N  E  S+FS +  AL+N  ++       +    PI     +K    +  E    
Sbjct: 175  KNYFLNDHEAQSLFSTI--ALDNLNKVLNELQVEIHD-LPINIPVYDKNNLTVSSEI--- 228

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L+   ++GL+ RL       G   + Y QRL +EL+VI+  +F  YFLIV DFI +AK N
Sbjct: 229  LKQLCISGLKQRLNAH---DGQVKKAYAQRLKYELDVISEKQFDDYFLIVYDFINYAKSN 285

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D   ++RD+V
Sbjct: 286  GIIVGPGRGSAAGSLVAYCLYITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKRDQV 345

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I Y+  KYG++ VA I+TF  L+AK ALRDVGR L +    +D++CK I  D    + L 
Sbjct: 346  IEYLFEKYGNDHVAYIVTFQRLKAKMALRDVGRILGIDLKVIDKICKNIKTDYDEDIDL- 404

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            AI   +  +E  +       L EIS+KL    R   THAAGI++ +  ++ ++P+   + 
Sbjct: 405  AIKKSATLKEMYV---LHKELFEISKKLIHAPRQIGTHAAGIILSNSSITNIIPIQLGIN 461

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
             D P++Q++M+++E+ GLIK D LGLK LT++   L  +   +  K+DL  I ++D   +
Sbjct: 462  -DRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIYKTQNKKIDLFNIDYNDKFVF 520

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
              L    T GIFQLES GM++ L  ++P  IEDI  + +L+RPGP  NI  +  R+  +E
Sbjct: 521  QDLAKAKTNGIFQLESPGMKKVLLKVKPQNIEDISIVSALFRPGPQQNIKTFVERRFKRE 580

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +    +     +L+ T G+IIYQEQV+++ + ++ + ++ +D  RRA+ KK ++ + + K
Sbjct: 581  EFSYWNEQTKKILEPTYGIIIYQEQVIELVKTIANFDIATSDNFRRAISKKDEKILMQLK 640

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI+GA  N   + +   IFE +  FA YGFN SH+ AY+ ISY  A++K +YP+EFL+
Sbjct: 641  DDFINGALANNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYPLEFLS 700

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVGT 847
              ++    + EK+  +  +A+ FNI I  P +     DF + +++  I +    IKG G 
Sbjct: 701  VLLSHTSASKEKLLSYLDEAKDFNISIKGPDIQHFSNDFVIDNHKQIIRFGFKTIKGFGD 760

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               + I  A  +        +   +    ++ + +E L+  GA D F  +R+ LL +L+ 
Sbjct: 761  ELLKKIKLALENAELSDYISYIDALKKGNISLKNIEILIRIGAFDSFEINRLFLLNNLEE 820

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN-EQRVLGFYFSGH 966
            I +     +        ++         + + L+  +  + + RF+  E + LG   S  
Sbjct: 821  IFE-----KTGLNGHFFDL---------NLVGLDYANDMSINERFQGDEIQYLGINLSSL 866

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGS 1013
                Y   +    +K   ES   I  N  + + A V++  Q KT+KG+
Sbjct: 867  NYTNYTNEIDYSNLKYEIESFNEINTNYEVNIVAQVLNIVQSKTKKGN 914


>gi|204305829|ref|YP_002224646.1| gp202 [Mycobacterium phage Cali]
 gi|197312802|gb|ACH63155.1| gp202 [Mycobacterium phage Cali]
          Length = 1160

 Score =  635 bits (1639), Expect = e-179,   Method: Composition-based stats.
 Identities = 256/1110 (23%), Positives = 476/1110 (42%), Gaps = 118/1110 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H   S+L+G      +  +       ++AITD +++     F +   AAG++P++G 
Sbjct: 37   LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVLGA 96

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +    +  N+  + + KT       IVLL     G + L  L S  Y  +Q  +  ++  
Sbjct: 97   EQRWML--NIADSRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKPQLDP 154

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ------ 187
              L +   +GL    G            +   +A +       +FGD  Y  L       
Sbjct: 155  GLLMQY-RDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTWQFIN 213

Query: 188  RHRGYDRYRESQV-------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                  +   +++       V+LA    +PLV  N++ +  E  ++ H  +  ++  +  
Sbjct: 214  PVSPEQQALNAKMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMSTGSWK 273

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIF-------SDLPEALENTVEIARRCSFILQVHAPILP 293
              +   R     ++ N  E+           S + EA+ N+  IA +C+  +      +P
Sbjct: 274  KDQHEERGHAADWMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKLLAMP 333

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            R    + +D         R     G +       + KG     YRQRL++E  +I     
Sbjct: 334  RLHATDAEDAAA-----FRRAIEEGFKR----FVVDKGLPEDVYRQRLEYEAKLIIDKNM 384

Query: 354  SGYFLIVADFIQWAKKNNIP-------------VGPGRGSGAGSVTAYALTITDIDPLRF 400
            +GYF +VAD++  A+                   GPGRGS  GS+  Y + IT IDP+++
Sbjct: 385  AGYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIKY 444

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             L+FERF+NPDR   PD D+DF + ++  V +Y+  +YG   V  I T    + +  L+D
Sbjct: 445  DLMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQD 504

Query: 461  VGRALQMPYSQVDRLCKLI-------PNDPAHPVSLQAIADDSRFREARLA-----DPSV 508
            + RA  +P+ ++ ++  L+       P +    +      D   + E          P  
Sbjct: 505  LCRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPED--EDPPTWGEVLQEIGGELAPYA 562

Query: 509  DR---LLEISQKLEGLYRHASTHAAGIVIGDRPLS-QLVPMYRDVRSDLPVTQFNMKWIE 564
             +   L  + +++  + R    H AG+++   P+   L+P  R   +D+  TQF+M  +E
Sbjct: 563  KKYPDLFNLMEQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDMYELE 622

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS------------------LIPFDD 605
            + G +K D L  K L +L  + D + +R  V +D                        +D
Sbjct: 623  ELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVIALNEERYLND 682

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI---DNIVVYN 662
               Y  +    T G+FQ+ +    +     +P  + D+  L S+ RPG       +  Y 
Sbjct: 683  PAIYDQIDRGQTAGLFQVNTPAGTKLAMRFKPRSVVDMADLASINRPGVTRVPGLLDKYI 742

Query: 663  NRKNGKEKIVSIHPLIDPMLKE-----TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
             R++G+E++   HPL++ +        T G+++YQEQ+++ A+ L+G++  EA+ LR+ +
Sbjct: 743  ERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAERLRKGI 802

Query: 718  GKKIKEEMDKQKERFISGASKN------GISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            GKK  E +++ + +F+ G   N      G ++ +A  I++ L     Y FNKSH   YA+
Sbjct: 803  GKKKMEIINELEPKFLDGCMANSEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHGVGYAL 862

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
               Q AW+K +Y  EF+   + +     +K  +F ++ RQ    ++PP VN     F + 
Sbjct: 863  QPCQEAWVKHYYFDEFITGCLVIH---TDKTIRFLRECRQRKRAVLPPDVNQSGAGFTLT 919

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR-VLESLVFAGA 890
            D  I + L  I G+G      I+   A++PF  L+DF +R       ++ V+++L+  GA
Sbjct: 920  DEGIRFGLTDISGIGDAAMPDIL---ANRPFKDLDDFLARASKSGGAKKGVVDALIKVGA 976

Query: 891  LDCFGYSRMQLLQSLDNIQK----YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             D  G  R  +L+ +   ++      +W + +   +   I A  +    D      ++ E
Sbjct: 977  FDFTGEHRQVMLEKVYRHRRGLSAPVKWAKMSLDEQVAEIAAKRRVKPED---YPVYNFE 1033

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +     + E  +LG + S  P+  Y  ++    I+   +      G+   +   +V  + 
Sbjct: 1034 DPQFIHDLEVEMLGTFVSYDPMAKYARMIDGECIRHPMDYDDFEPGDRFCVGGKLVKART 1093

Query: 1007 KKTRKGSRIGWVTF----SEPAKEYEANFF 1032
             + + G ++ ++       +    +E   F
Sbjct: 1094 HRQKNGKQMAFLAVHWNEED----FEILAF 1119


>gi|171920935|ref|ZP_02932081.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 13
            str. ATCC 33698]
 gi|171903166|gb|EDT49455.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 13
            str. ATCC 33698]
          Length = 969

 Score =  635 bits (1638), Expect = e-179,   Method: Composition-based stats.
 Identities = 305/1008 (30%), Positives = 498/1008 (49%), Gaps = 100/1008 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F++L VHS YSLL  ALS+++++     + QP + +TD NN++  +EF  KA A  + PI
Sbjct: 2    FINLNVHSYYSLLNSALSIDDLIQHALDNNQPYVCLTDLNNMYGCIEFYDKAKAHNLIPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + +                     ++V       GY +LI+  S +           
Sbjct: 62   IGLEFEY-----------------QNTTLVAYAKNYNGYLKLIKWSSWIMTNTTF----- 99

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                 +QE   + +I+      G +                     +F +  +   Q   
Sbjct: 100  ----IIQEDFDDLIIV---CKKGGL---------------------VFENPNFYQAQNQN 131

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              +                  +A  +  +  E D      ++A+ +   +          
Sbjct: 132  ASNA-----------------IALQSVFYAQENDKTVFLAMLAIKNDLKLDDFIDCHEFD 174

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +Y  N  E  S+FS +  AL+N  ++       +    PI     +K    +  E    
Sbjct: 175  KNYFLNDHEAQSLFSTI--ALDNLNKVLNELQVEIHD-LPINIPVYDKNNLTVSSEI--- 228

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L+   ++GL+ RL       G   + Y +RL +EL+VI+  +F  YFLIV DFI +AK N
Sbjct: 229  LKQLCISGLKQRLNAH---DGQVKKVYAKRLKYELDVISEKQFDDYFLIVYDFINYAKSN 285

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D   ++RD+V
Sbjct: 286  GIIVGPGRGSAAGSLVAYCLYITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKRDQV 345

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I Y+  KYG++ VA I+TF  L+AK ALRDVGR L +    +D++CK I  D    + L 
Sbjct: 346  IEYLFEKYGNDHVAYIVTFQRLKAKMALRDVGRILGIDLKVIDKICKNIKTDYDEDIDL- 404

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            AI   +  +E  +       L EIS+KL    R   THAAGI++ +  ++ ++P+   + 
Sbjct: 405  AIKKSATLKEMYV---LHKELFEISKKLIHAPRQIGTHAAGIILSNSSITNIIPIQLGIN 461

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
             D P++Q++M+++E+ GLIK D LGLK LT++   L  +   +  K+DL  I ++D   +
Sbjct: 462  -DRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIYKTQNKKIDLFNIDYNDKFVF 520

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
              L    T GIFQLES GM++ L  ++P  IEDI  + +L+RPGP  NI  +  R+  +E
Sbjct: 521  QDLAKAKTNGIFQLESPGMKKVLLKVKPQNIEDISIVSALFRPGPQQNIKTFVERRFKRE 580

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +    +     +L+ T G+IIYQEQV+++ + ++ + ++ +D  RRA+ KK ++ + + K
Sbjct: 581  EFSYWNEQTKKILEPTYGIIIYQEQVIELVKTIANFDIATSDNFRRAISKKDEKILMQLK 640

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI+GA  N   + +   IFE +  FA YGFN SH+ AY+ ISY  A++K +YP+EFL+
Sbjct: 641  DDFINGALANNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYPLEFLS 700

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVGT 847
              ++    + EK+  +  +A+ FNI I  P +     DF + +++  I +    IKG G 
Sbjct: 701  VLLSHTSASKEKLLSYLDEAKDFNISIKGPDIQHFSNDFVIDNHKQIIRFGFKTIKGFGD 760

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               + I  A  +        +   +    ++ + +E L+  GA D F  +R+ LL +L+ 
Sbjct: 761  ELLKKIKLALENAELSDYISYIDALKKGNISLKNIEILIRIGAFDSFEINRLFLLNNLEE 820

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF-ENEQRVLGFYFSGH 966
            I +     +        ++         + + L+  +  + + RF E+E + LG   S  
Sbjct: 821  IFE-----KTGLNGHFFDL---------NLVGLDYANDMSINERFQEDEIQYLGINLSSL 866

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGS 1013
                Y   +    +K   ES   I  N  + + A V++  Q KT+KG+
Sbjct: 867  NYTNYTNEIDYSNLKYEIESFNEINTNYEVNIVAQVLNIVQSKTKKGN 914


>gi|220912798|ref|YP_002488107.1| DNA polymerase III subunit alpha [Arthrobacter chlorophenolicus A6]
 gi|219859676|gb|ACL40018.1| DNA polymerase III, alpha subunit [Arthrobacter chlorophenolicus A6]
          Length = 1161

 Score =  635 bits (1638), Expect = e-179,   Method: Composition-based stats.
 Identities = 274/1110 (24%), Positives = 478/1110 (43%), Gaps = 114/1110 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL V +++S   G      +    AAD   A+A TD + L+  ++  +   AAG+ P
Sbjct: 2    SFTHLHVSTAFSAHYGVSWPEELAQAAAADGASALACTDRDGLYGTIKHLKACMAAGLDP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS---TAEGYQRLIELVSRMYLLDQGK 126
            I+G        D   + + G         +V+L        GY+ L  L+S  +    GK
Sbjct: 62   IVGV-------DLAVLDDDGDRRTEVAGRVVVLAKGHNNGAGYRALCRLISDAHARTSGK 114

Query: 127  QSVRIC----------LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL-LTFK 175
                +            +   +     L++L G  S  + RA                  
Sbjct: 115  AGGTVPVAVTRAELASRTLDPQTLKPVLLVLIGPDS-DVGRAMGGRRYLRPRTLFKQWLD 173

Query: 176  KLFGDRLYVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             +    +   +                 ++++LA  H +P V TN   +   +     DV
Sbjct: 174  AMPAGTVVAEIVSQLSTPGSPLSTAHAVRMLRLAEEHRVPAVLTNAVRYCGADGAPTADV 233

Query: 231  LMAVAH-STVVSQKDRPRVTP--DHYLKNRSEMVSIF-----------SDLPEALENTVE 276
            L +     ++      P + P    +LK  ++M  +            +DL + L  T  
Sbjct: 234  LDSARTLKSLPELAGEPLLQPTGQGWLKTSNQMRRLAQEVISAAGYGAADLTQLLAQTEA 293

Query: 277  IARRCSFILQ-VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
            +A  C            P   E     I ++   EL  +  AG+  R        G   Q
Sbjct: 294  LADACRIDPAGDMGWKQPVVPEASIIGINQDPALELVQRCHAGIGRRFPGIT---GTAEQ 350

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
                RL+ EL +I  + FS YFL VA+  +  +   +     RGSGA S+  Y + ++ +
Sbjct: 351  AMLTRLEHELTIIRNLNFSSYFLTVAEVSRMIQDMGVR-AAARGSGASSLVNYLIDVSQV 409

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            +PL+  L+FERFL+ DR ++PD DID     R  V R +  ++G ERV  +      +A+
Sbjct: 410  NPLQHDLIFERFLSQDRATLPDIDIDVESAERHNVYRKIFERFGAERVTLMSMQNGYRAR 469

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR--------LADPS 507
             A+RD G AL M   +V  + K +    A     +A+ +    RE            +  
Sbjct: 470  GAVRDAGLALGMDGDEVGEIAKQLWRFSAGKFR-EALQEKPELREFAGRVEQRDTDGNQQ 528

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            +D L++++++L+ L RH S H  G+++GD  L    P+       LP++QF+   ++  G
Sbjct: 529  LDLLVDLTERLDRLPRHISMHPCGVILGDATLLDRTPVQ-PSGLGLPMSQFDKHDMDPMG 587

Query: 568  LIKFDFLGLKTLTLLQKSL----------------------------DFLAQRGVKVDLS 599
            ++K D LG++  + +  ++                            D++A  G  +DL+
Sbjct: 588  MLKLDVLGVRMQSAMAFAVREVIRLHPSKEEVVAAGNHPRGPQGSGPDYIADNG-HIDLN 646

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DN 657
             +P DD  T+ L+ +  TLG FQ+ES G R+ +  M P    D+I  +SL+RPGP+  D 
Sbjct: 647  AVPLDDQATFELIRSTHTLGCFQIESPGQRELIGKMAPREFNDLIIDISLFRPGPMKSDM 706

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +  +   ++G    V  HP + P+L ET GV ++ EQ+++   +++   L+ AD  RRA+
Sbjct: 707  VRPFLEHRHGFAPEVYPHPDLKPVLAETHGVTVFHEQILKTFDVMTHCGLARADEFRRAL 766

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            G +I+E     +E F   A   G +  +   ++  L  F  +GF K+H AA+AV +YQ+A
Sbjct: 767  GNEIRE--PDVEEFFRKAARARGYAPEVLDKVWGTLKAFGSFGFCKAHGAAFAVPTYQSA 824

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------- 830
            W+KTH+P  FLA     +     K +    +AR+  I I+P  +N    +++V       
Sbjct: 825  WLKTHHPEAFLAGLWEHDPGMYPK-RLLVAEARRLGIPILPLDINRSKDEYRVERILSGA 883

Query: 831  --GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              G   I  SL  I G+  T  + I+   A +PFDSL D  SR    ++++  ++ L   
Sbjct: 884  DSGKLGIRLSLKGIYGLSATELKRIV---AGQPFDSLADLRSR---SRISKPSIKRLAQL 937

Query: 889  GALDCFG------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            GA D          +R  L+Q L  +Q        +      +    +    + K  L +
Sbjct: 938  GAFDSLHREAGGTANRADLVQHLQQLQVTGSRKGTDVLEGQLSFPLGDIELRNVKPGLPQ 997

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             ++         E  ++    S H +D ++P+L ++G+   ++ +    G  + +A + V
Sbjct: 998  PTL---VETVRAELDLMAVDVSTHLMDSHRPVLERLGVTTADKLLGLRNGTEVLVAGVRV 1054

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + Q    R G R+ +++  +     ++ FF
Sbjct: 1055 ATQTPPMRGGRRVVFISIDDGTGCIDSVFF 1084


>gi|185178880|ref|ZP_02964653.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 5
            str. ATCC 27817]
 gi|188518258|ref|ZP_03003786.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 11
            str. ATCC 33695]
 gi|195867837|ref|ZP_03079837.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 9
            str. ATCC 33175]
 gi|198273830|ref|ZP_03206364.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 4
            str. ATCC 27816]
 gi|225550623|ref|ZP_03771572.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 2
            str. ATCC 27814]
 gi|225551185|ref|ZP_03772131.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 8
            str. ATCC 27618]
 gi|184209132|gb|EDU06175.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 5
            str. ATCC 27817]
 gi|188998262|gb|EDU67359.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 11
            str. ATCC 33695]
 gi|195660534|gb|EDX53791.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 9
            str. ATCC 33175]
 gi|198249585|gb|EDY74367.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 4
            str. ATCC 27816]
 gi|225379000|gb|EEH01365.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 8
            str. ATCC 27618]
 gi|225379777|gb|EEH02139.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 2
            str. ATCC 27814]
          Length = 969

 Score =  635 bits (1638), Expect = e-179,   Method: Composition-based stats.
 Identities = 306/1008 (30%), Positives = 498/1008 (49%), Gaps = 100/1008 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F++L VHS YSLL  ALS+++++     + QP + +TD NN++  +EF  KA A  + PI
Sbjct: 2    FINLNVHSYYSLLNSALSIDDLIQHALDNNQPYVCLTDLNNMYGCIEFYDKAKAHNLIPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + +                     ++V       GY +LI+  S +           
Sbjct: 62   IGLEFEY-----------------QNTTLVAYAKNYNGYLKLIKWSSWIMTNTTF----- 99

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                 +QE   + +I+      G +                     +F +  +   Q   
Sbjct: 100  ----IIQEDFDDLIIV---CKKGGL---------------------VFENPNFYQAQNQN 131

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              +                  +A  +  +  E D      ++A+ +   +          
Sbjct: 132  ASNA-----------------IALQSVFYAQENDKTVFLAMLAIKNDLKLDDFIDCHEFD 174

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +Y  N  E  S+FS +  AL+N  ++       +    PI     +K    +  E    
Sbjct: 175  KNYFLNDHEAQSLFSTI--ALDNLNKVLNELQVEIHD-LPINIPVYDKNNLTVSSEI--- 228

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L+   ++GL+ RL       G   + Y QRL +EL+VI+  +F  YFLIV DFI +AK N
Sbjct: 229  LKQLCISGLKQRLNAH---DGQVKKAYAQRLKYELDVISEKQFDDYFLIVYDFINYAKSN 285

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D   ++RD+V
Sbjct: 286  GIIVGPGRGSAAGSLVAYCLYITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKRDQV 345

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I Y+  KYG++ VA I+TF  L+AK ALRDVGR L +    +D++CK I  D    + L 
Sbjct: 346  IEYLFEKYGNDHVAYIVTFQRLKAKMALRDVGRILGIDLKVIDKICKNIKTDYDEDIDL- 404

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            AI   +  +E  +       L EIS+KL    R   THAAGI++ +  ++ ++P+   + 
Sbjct: 405  AIKKSATLKEMYV---LHKELFEISKKLIHAPRQIGTHAAGIILSNSSITNIIPIQLGIN 461

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
             D P++Q++M+++E+ GLIK D LGLK LT++   L  +   +  K+DL  I ++D   +
Sbjct: 462  -DRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIYKTQNKKIDLFNIDYNDKFVF 520

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
              L    T GIFQLES GM++ L  ++P  IEDI  + +L+RPGP  NI  +  R+  +E
Sbjct: 521  QDLAKAKTNGIFQLESPGMKKVLLKVKPQNIEDISIVSALFRPGPQQNIKTFVERRFKRE 580

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +    +     +L+ T G+IIYQEQV+++ + ++ + ++ +D  RRA+ KK ++ + + K
Sbjct: 581  EFSYWNEQTKKILEPTYGIIIYQEQVIELVKTIANFDIATSDNFRRAISKKDEKILMQLK 640

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI+GA  N   + +   IFE +  FA YGFN SH+ AY+ ISY  A++K +YP+EFL+
Sbjct: 641  DDFINGALANNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYPLEFLS 700

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVGT 847
              ++    + EK+  +  +A+ FNI I  P +     DF + +++  I +    IKG G 
Sbjct: 701  VLLSHTSASKEKLLSYLDEAKDFNISIKGPDIQHFSNDFVIDNHKQIIRFGFKTIKGFGD 760

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               + I  A  +        +   +    ++ + +E L+  GA D F  +R+ LL +L+ 
Sbjct: 761  ELLKKIKLALENAELSDYISYIDALKKGNISLKNIEILIRIGAFDSFEINRLFLLNNLEE 820

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF-ENEQRVLGFYFSGH 966
            I +     +        ++         + + L+  +  + + RF E+E + LG   S  
Sbjct: 821  IFE-----KTGLNGHFFDL---------NLVGLDYANDMSINERFQEDEIQYLGINLSSL 866

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGS 1013
                Y   +    +K   ES   I  N  + + A V++  Q KT+KG+
Sbjct: 867  NYTNYTNEIDYSNLKYEIESFNEINTNYEVNIVAQVLNIVQSKTKKGN 914


>gi|119961680|ref|YP_948048.1| DNA polymerase III, alpha subunit [Arthrobacter aurescens TC1]
 gi|119948539|gb|ABM07450.1| putative DNA polymerase III, alpha subunit [Arthrobacter aurescens
            TC1]
          Length = 1172

 Score =  635 bits (1638), Expect = e-179,   Method: Composition-based stats.
 Identities = 265/1112 (23%), Positives = 471/1112 (42%), Gaps = 113/1112 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL V +++S   G    + +    AA+   A+A TD + L+  ++  +    A I P
Sbjct: 2    SFTHLHVSTAFSAHYGVSWPDELAQTAAANGATALACTDRDGLYGTIKHLKACMDASIDP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G  L +   D    T  G      V  +    +   GY+ L  L+S  +    GK   
Sbjct: 62   IVGVDLAVFDDDGDHRTQVGGR----VVVLAHGNNNGAGYRALCRLISDAHARTSGKAGG 117

Query: 130  RIC----------LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +            +   +     L +L G  S  +  A               +     
Sbjct: 118  AVPAAVTRGELASRTLDPKTLKPVLTVLIGPDS-DVGLAMGGRKYLRPRTLFKQWIDAMP 176

Query: 180  DRLYV-NLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
                V  +  H              ++++LA  + +P + +N   + +++     DVL +
Sbjct: 177  PGTMVAEVVSHLSAPGEPLSTAHAVRMLKLALEYNIPAILSNAVRYCAQDGAATADVLDS 236

Query: 234  VAHSTVVSQ---------KDRPRVTPDHYLKNRSEMVSIF-----------SDLPEALEN 273
                  + +             + T   +LK   +M+ +            +DL + L N
Sbjct: 237  ARTLKSLPELSTAPPLQPTGMLQPTGQGWLKTPQQMLQLGKEIMNAAGQGKADLTKLLAN 296

Query: 274  TVEIARRCSFILQVH-APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
            T  +A +C     +      P   E     I  +   EL  +  AG+  R        G 
Sbjct: 297  TEALADKCRINPVLDMGWKKPVVPEASIIGIDADPMLELTQRCEAGITRRFPGI---NGD 353

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              +  R RL+ EL +I R+ F+ YFL VA+  +      + V   RGSGA S+  Y + I
Sbjct: 354  AEKHLRSRLEHELGIIGRLGFASYFLTVAEVSRMILDMGVRVA-ARGSGASSLVNYLIDI 412

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            + +DP+R  L+FERFL+  R ++PD DID     R  V R + +++G ERV  +      
Sbjct: 413  SQVDPIRHDLIFERFLSGRRSTLPDIDIDVESAERHNVYRKIFDRFGAERVTLMSMQNGY 472

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE--------ARLA 504
            +A+ A+RD G AL MP  +V  + K +    A     +A+ +    R+        A   
Sbjct: 473  RARGAVRDAGMALGMPDDEVGEIAKQLWRFSARKFR-EALVEKPELRDFAGRVERGALEE 531

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            +  +D L++++++L+ L RH S H  G+++GD  L    P+       LP++QF+   ++
Sbjct: 532  NQQLDLLVDLTERLDRLPRHISMHPCGVILGDATLLDRTPVQ-PSGLGLPMSQFDKHDMD 590

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---------------------------KVD 597
              G++K D LG++  + +  ++  + +                              ++D
Sbjct: 591  PMGMLKLDVLGVRMQSAMAFAVREVIRLHPSKAEVVAAGRHPIEPGGDGPDYIAPDGRID 650

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            L+ +PFDD  TY L+ +  TLG FQ+ES G R+ +  M P    D+I  +SL+RPGP+  
Sbjct: 651  LNAVPFDDEPTYELIRSTHTLGCFQIESPGQRELIGKMAPREFNDLIIDISLFRPGPMKS 710

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D +  +   ++G    +  H  + P+L+ET GV ++ EQ+++   +++   L  AD  RR
Sbjct: 711  DMVRPFLEHRHGFAPEIYPHQDLKPVLQETHGVTVFHEQILKTFHVMTDCGLDRADEFRR 770

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            A+G    E  +   E++    +    S  +   ++  L  F  +GF K+H AA+AV +YQ
Sbjct: 771  ALGD---EVQEPGVEKYFRKEAIKKYSPEVVDKVWGTLKAFGSFGFCKAHGAAFAVPTYQ 827

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----- 830
            +AW+K H+P  FLA     +     K +    +AR+  I I+P  +N    +++V     
Sbjct: 828  SAWLKAHHPEAFLAGLWEHDPGMYPK-RLLVAEARRLGIPILPLDINRSQAEYRVEKIQQ 886

Query: 831  ----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                G   I  SL  I G+     + I+   A +P+DSL D  +R    K N   ++ L 
Sbjct: 887  GTNHGKLGIRLSLTGIYGLSGAELKRIV---AGQPYDSLADLRARARVSKPN---IKRLA 940

Query: 887  FAGALDCFGY------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
              GA D          +R  L+Q L  +Q        +         A   G    +   
Sbjct: 941  QLGAFDALHKDSGGKANRADLVQHLQALQSNPSKKATDGIEGQ---LAFALGDVELRNLA 997

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
             +            E  ++    S H ++ ++P+L K+G+   ++ ++   G  + +A +
Sbjct: 998  PELPAPTMVDNVRAELDLMAVDVSEHLMESHRPLLEKLGVTTADKLLSLRNGTEVLVAGV 1057

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++ Q    R G R+ +++  +     ++ FF
Sbjct: 1058 RIATQTPPMRGGRRVVFISIDDGTGCVDSVFF 1089


>gi|281416111|ref|YP_003347847.1| gp197 [Mycobacterium phage ET08]
 gi|255927790|gb|ACU41411.1| gp197 [Mycobacterium phage ET08]
          Length = 1172

 Score =  635 bits (1638), Expect = e-179,   Method: Composition-based stats.
 Identities = 256/1110 (23%), Positives = 476/1110 (42%), Gaps = 118/1110 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H   S+L+G      +  +       ++AITD +++     F +   AAG++P++G 
Sbjct: 49   LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVLGA 108

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +    +  N+  + + KT       IVLL     G + L  L S  Y  +Q  +  ++  
Sbjct: 109  EQRWML--NIADSRERKTGASDSSHIVLLAENNIGLRNLWALSSLAYEPEQFYKKPQLDP 166

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ------ 187
              L +   +GL    G            +   +A +       +FGD  Y  L       
Sbjct: 167  GLLMQY-RDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTWQFIN 225

Query: 188  RHRGYDRYRESQV-------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                  +   +++       V+LA    +PLV  N++ +  E  ++ H  +  ++  +  
Sbjct: 226  PVSPEQQALNAKMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMSTGSWK 285

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIF-------SDLPEALENTVEIARRCSFILQVHAPILP 293
              +   R     ++ N  E+           S + EA+ N+  IA +C+  +      +P
Sbjct: 286  KDQHEERGHAADWMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKLLAMP 345

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            R    + +D         R     G +       + KG     YRQRL++E  +I     
Sbjct: 346  RLHATDAEDAAA-----FRRAIEEGFKR----FVVDKGLPEDVYRQRLEYEAKLIIDKNM 396

Query: 354  SGYFLIVADFIQWAKKNNIP-------------VGPGRGSGAGSVTAYALTITDIDPLRF 400
            +GYF +VAD++  A+                   GPGRGS  GS+  Y + IT IDP+++
Sbjct: 397  AGYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIKY 456

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             L+FERF+NPDR   PD D+DF + ++  V +Y+  +YG   V  I T    + +  L+D
Sbjct: 457  DLMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQD 516

Query: 461  VGRALQMPYSQVDRLCKLI-------PNDPAHPVSLQAIADDSRFREARLA-----DPSV 508
            + RA  +P+ ++ ++  L+       P +    +      D   + E          P  
Sbjct: 517  LCRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPED--EDPPTWGEVLQEIGGELAPYA 574

Query: 509  DR---LLEISQKLEGLYRHASTHAAGIVIGDRPLS-QLVPMYRDVRSDLPVTQFNMKWIE 564
             +   L  + +++  + R    H AG+++   P+   L+P  R   +D+  TQF+M  +E
Sbjct: 575  KKYPDLFNLMEQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDMYELE 634

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS------------------LIPFDD 605
            + G +K D L  K L +L  + D + +R  V +D                        +D
Sbjct: 635  ELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVIALNEERYLND 694

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI---DNIVVYN 662
               Y  +    T G+FQ+ +    +     +P  + D+  L S+ RPG       +  Y 
Sbjct: 695  PAIYDQIDRGQTAGLFQVNTPAGTKLAMRFKPRSVVDMADLASINRPGVTRVPGLLDKYI 754

Query: 663  NRKNGKEKIVSIHPLIDPMLKE-----TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
             R++G+E++   HPL++ +        T G+++YQEQ+++ A+ L+G++  EA+ LR+ +
Sbjct: 755  ERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAERLRKGI 814

Query: 718  GKKIKEEMDKQKERFISGASKN------GISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            GKK  E +++ + +F+ G   N      G ++ +A  I++ L     Y FNKSH   YA+
Sbjct: 815  GKKKMEIINELEPKFLDGCMANSEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHGVGYAL 874

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
               Q AW+K +Y  EF+   + +     +K  +F ++ RQ    ++PP VN     F + 
Sbjct: 875  QPCQEAWVKHYYFDEFITGCLVIH---TDKTIRFLRECRQRKRAVLPPDVNQSGAGFTLT 931

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR-VLESLVFAGA 890
            D  I + L  I G+G      I+   A++PF  L+DF +R       ++ V+++L+  GA
Sbjct: 932  DEGIRFGLTDISGIGDAAMPDIL---ANRPFKDLDDFLARASKSGGAKKGVVDALIKVGA 988

Query: 891  LDCFGYSRMQLLQSLDNIQK----YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             D  G  R  +L+ +   ++      +W + +   +   I A  +    D      ++ E
Sbjct: 989  FDFTGEHRQVMLEKVYRHRRGLSAPVKWAKMSLDEQVAEIAAKRRVKPED---YPVYNFE 1045

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +     + E  +LG + S  P+  Y  ++    I+   +      G+   +   +V  + 
Sbjct: 1046 DPQFIHDLEVEMLGTFVSYDPMAKYARMIDGECIRHPMDYDDFEPGDRFCVGGKLVKART 1105

Query: 1007 KKTRKGSRIGWVTF----SEPAKEYEANFF 1032
             + + G ++ ++       +    +E   F
Sbjct: 1106 HRQKNGKQMAFLAVHWNEED----FEILAF 1131


>gi|109393383|ref|YP_656181.1| gp201 [Mycobacterium phage Catera]
 gi|91981205|gb|ABE67920.1| gp201 [Mycobacterium phage Catera]
          Length = 1131

 Score =  635 bits (1638), Expect = e-179,   Method: Composition-based stats.
 Identities = 255/1110 (22%), Positives = 475/1110 (42%), Gaps = 118/1110 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H   S+L+G      +  +       ++AITD +++     F +   AAG++P++G 
Sbjct: 8    LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVLGA 67

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +    +  N+  + + KT       IVLL     G + L  L S  Y  +Q  +  ++  
Sbjct: 68   EQRWML--NIADSRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKPQLDP 125

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ------ 187
              L +   +GL    G            +   +A +       +FGD  Y  L       
Sbjct: 126  GLLMQY-RDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTWQFIN 184

Query: 188  RHRGYDRYRESQV-------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                  +   +++       V+LA    +PLV  N++ +  E  ++ H  +  ++  +  
Sbjct: 185  PVSPEQQALNAKMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMSTGSWK 244

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIF-------SDLPEALENTVEIARRCSFILQVHAPILP 293
              +   R     ++ N  E+           S + EA+ N+  IA +C+  +      +P
Sbjct: 245  KDQHEERGHAADWMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKLLAMP 304

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            R    + +D         R     G +       + KG     YRQRL++E  +I     
Sbjct: 305  RLHATDAEDAAA-----FRRAIEEGFKR----FVVDKGLPEDVYRQRLEYEAKLIIDKNM 355

Query: 354  SGYFLIVADFIQWAKKNNIP-------------VGPGRGSGAGSVTAYALTITDIDPLRF 400
            +GYF +VAD++  A+                   GPGRGS  GS+  Y + IT IDP+++
Sbjct: 356  AGYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIKY 415

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             L+FERF+NPDR   PD D+DF + ++  V +Y+  +YG   V  I T    + +  L+D
Sbjct: 416  DLMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQD 475

Query: 461  VGRALQMPYSQVDRLCKLI-------PNDPAHPVSLQAIADDSRFREARLA-----DPSV 508
            + RA  +P+ ++ ++  L+       P +    +      D   + E          P  
Sbjct: 476  LCRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPED--EDPPTWGEVLQEIGGELAPYA 533

Query: 509  DR---LLEISQKLEGLYRHASTHAAGIVIGDRPLS-QLVPMYRDVRSDLPVTQFNMKWIE 564
             +   L  + +++  + R    H AG+++   P+   L+P  R   +D+  TQF+M  +E
Sbjct: 534  KKYPDLFNLMEQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDMYELE 593

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV------------------DLSLIP-FDD 605
            + G +K D L  K L +L  + D + +R                       L+     +D
Sbjct: 594  ELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVITLNEERYLND 653

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI---DNIVVYN 662
               Y  +    T G+FQ+ +    +     +P  + D+  L S+ RPG       +  Y 
Sbjct: 654  PAIYDQIDRGQTAGLFQVNTPAGTKLAMRFKPRSVVDMADLASINRPGVTRVPGLLDKYI 713

Query: 663  NRKNGKEKIVSIHPLIDPMLKE-----TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
             R++G+E++   HPL++ +        T G+++YQEQ+++ A+ L+G++  EA+ LR+ +
Sbjct: 714  ERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAERLRKGI 773

Query: 718  GKKIKEEMDKQKERFISGASKN------GISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            GKK  E +++ + +F+ G   N      G ++ +A  I++ L     Y FNKSH   YA+
Sbjct: 774  GKKKMEIINELEPKFLDGCMANPEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHGVGYAL 833

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
               Q AW+K +Y  EF+   + +     +K  +F ++ RQ    ++PP VN     F + 
Sbjct: 834  QPCQEAWVKHYYFDEFITGCLVIH---TDKTIRFLRECRQRKRAVLPPDVNQSGAGFTLT 890

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR-VLESLVFAGA 890
            D  I + L  I G+G      I+   A++PF  L+DF +R       ++ V+++L+  GA
Sbjct: 891  DEGIRFGLTDISGIGDAAMPDIL---ANRPFKDLDDFLARASKSGGAKKGVVDALIKVGA 947

Query: 891  LDCFGYSRMQLLQSLDNIQK----YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             D  G  R  +L+ +   ++      +W + +   +   I A  +    D      ++ E
Sbjct: 948  FDFTGEHRQVMLEKVYRHRRGLSAPVKWAKMSLDEQVAEIAAKRRVKPED---YPVYNFE 1004

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +     + E  +LG + S  P+  Y  ++    I+   +      G+   +   +V  + 
Sbjct: 1005 DPQFIHDLEVEMLGTFVSYDPMAKYARMIDGECIRHPMDYDDFEPGDRFCVGGKLVKART 1064

Query: 1007 KKTRKGSRIGWVTF----SEPAKEYEANFF 1032
             + + G ++ ++       +    +E   F
Sbjct: 1065 HRQKNGKQMAFLAVHWNEED----FEILAF 1090


>gi|203459045|ref|YP_002224201.1| gp202 [Mycobacterium phage ScottMcG]
 gi|203460690|ref|YP_002224424.1| gp203 [Mycobacterium phage Spud]
 gi|197312271|gb|ACH62627.1| gp203 [Mycobacterium phage Spud]
 gi|197312492|gb|ACH62847.1| gp202 [Mycobacterium phage ScottMcG]
          Length = 1131

 Score =  635 bits (1637), Expect = e-179,   Method: Composition-based stats.
 Identities = 256/1110 (23%), Positives = 476/1110 (42%), Gaps = 118/1110 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H   S+L+G      +  +       ++AITD +++     F +   AAG++P++G 
Sbjct: 8    LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVLGA 67

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +    +  N+  + + KT       IVLL     G + L  L S  Y  +Q  +  ++  
Sbjct: 68   EQRWML--NIADSRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKPQLDP 125

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ------ 187
              L +   +GL    G            +   +A +       +FGD  Y  L       
Sbjct: 126  GLLMQY-RDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTWQFIN 184

Query: 188  RHRGYDRYRESQV-------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                  +   +++       V+LA    +PLV  N++ +  E  ++ H  +  ++  +  
Sbjct: 185  PVSPEQQALNAKMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMSTGSWK 244

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIF-------SDLPEALENTVEIARRCSFILQVHAPILP 293
              +   R     ++ N  E+           S + EA+ N+  IA +C+  +      +P
Sbjct: 245  KDQHEERGHAADWMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKLLAMP 304

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            R    + +D         R     G +       + KG     YRQRL++E  +I     
Sbjct: 305  RLHATDAEDAAA-----FRRAIEEGFKR----FVVDKGLPEDVYRQRLEYEAKLIIDKNM 355

Query: 354  SGYFLIVADFIQWAKKNNIP-------------VGPGRGSGAGSVTAYALTITDIDPLRF 400
            +GYF +VAD++  A+                   GPGRGS  GS+  Y + IT IDP+++
Sbjct: 356  AGYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIKY 415

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             L+FERF+NPDR   PD D+DF + ++  V +Y+  +YG   V  I T    + +  L+D
Sbjct: 416  DLMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQD 475

Query: 461  VGRALQMPYSQVDRLCKLI-------PNDPAHPVSLQAIADDSRFREARLA-----DPSV 508
            + RA  +P+ ++ ++  L+       P +    +      D   + E          P  
Sbjct: 476  LCRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPED--EDPPTWGEVLQEIGGELAPYA 533

Query: 509  DR---LLEISQKLEGLYRHASTHAAGIVIGDRPLS-QLVPMYRDVRSDLPVTQFNMKWIE 564
             +   L  + +++  + R    H AG+++   P+   L+P  R   +D+  TQF+M  +E
Sbjct: 534  KKYPDLFNLMEQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDMYELE 593

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS------------------LIPFDD 605
            + G +K D L  K L +L  + D + +R  V +D                        +D
Sbjct: 594  ELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVIALNEERYLND 653

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI---DNIVVYN 662
               Y  +    T G+FQ+ +    +     +P  + D+  L S+ RPG       +  Y 
Sbjct: 654  PAIYDQIDRGQTAGLFQVNTPAGTKLAMRFKPRSVVDMADLASINRPGVTRVPGLLDKYI 713

Query: 663  NRKNGKEKIVSIHPLIDPMLKE-----TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
             R++G+E++   HPL++ +        T G+++YQEQ+++ A+ L+G++  EA+ LR+ +
Sbjct: 714  ERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAERLRKGI 773

Query: 718  GKKIKEEMDKQKERFISGASKN------GISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            GKK  E +++ + +F+ G   N      G ++ +A  I++ L     Y FNKSH   YA+
Sbjct: 774  GKKKMEIINELEPKFLDGCMANSEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHGVGYAL 833

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
               Q AW+K +Y  EF+   + +     +K  +F ++ RQ    ++PP VN     F + 
Sbjct: 834  QPCQEAWVKHYYFDEFITGCLVIH---TDKTIRFLRECRQRKRAVLPPDVNQSGAGFTLT 890

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR-VLESLVFAGA 890
            D  I + L  I G+G      I+   A++PF  L+DF +R       ++ V+++L+  GA
Sbjct: 891  DEGIRFGLTDISGIGDAAMPDIL---ANRPFKDLDDFLARASKSGGAKKGVVDALIKVGA 947

Query: 891  LDCFGYSRMQLLQSLDNIQK----YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             D  G  R  +L+ +   ++      +W + +   +   I A  +    D      ++ E
Sbjct: 948  FDFTGEHRQVMLEKVYRHRRGLSAPVKWAKMSLDEQVAEIAAKRRVKPED---YPVYNFE 1004

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +     + E  +LG + S  P+  Y  ++    I+   +      G+   +   +V  + 
Sbjct: 1005 DPQFIHDLEVEMLGTFVSYDPMAKYARMIDGECIRHPMDYDDFEPGDRFCVGGKLVKART 1064

Query: 1007 KKTRKGSRIGWVTF----SEPAKEYEANFF 1032
             + + G ++ ++       +    +E   F
Sbjct: 1065 HRQKNGKQMAFLAVHWNEED----FEILAF 1090


>gi|29566684|ref|NP_818250.1| gp199 [Mycobacterium phage Bxz1]
 gi|29425409|gb|AAN16833.1| gp199 [Mycobacterium phage Bxz1]
          Length = 1131

 Score =  635 bits (1637), Expect = e-179,   Method: Composition-based stats.
 Identities = 255/1110 (22%), Positives = 475/1110 (42%), Gaps = 118/1110 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H   S+L+G      +  +       ++AITD +++     F +   AAG++P++G 
Sbjct: 8    LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVLGA 67

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +    +  N+  + + KT       IVLL     G + L  L S  Y  +Q  +  ++  
Sbjct: 68   EQRWML--NIADSRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKPQLDP 125

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ------ 187
              L +   +GL    G            +   +A +       +FGD  Y  L       
Sbjct: 126  GLLMQY-RDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTWQFIN 184

Query: 188  RHRGYDRYRESQV-------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                  +   +++       V+LA    +PLV  N++ +  E  ++ H  +  ++  +  
Sbjct: 185  PVSPEQQALNARMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMSTGSWK 244

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIF-------SDLPEALENTVEIARRCSFILQVHAPILP 293
              +   R     ++ N  E+           S + EA+ N+  IA +C+  +      +P
Sbjct: 245  KDQHEERGHAADWMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKLLAMP 304

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            R    + +D         R     G +       + KG     YRQRL++E  +I     
Sbjct: 305  RLHATDAEDAAA-----FRRAIEEGFKR----FVVDKGLPEDVYRQRLEYEAKLIIDKNM 355

Query: 354  SGYFLIVADFIQWAKKNNIP-------------VGPGRGSGAGSVTAYALTITDIDPLRF 400
            +GYF +VAD++  A+                   GPGRGS  GS+  Y + IT IDP+++
Sbjct: 356  AGYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIKY 415

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             L+FERF+NPDR   PD D+DF + ++  V +Y+  +YG   V  I T    + +  L+D
Sbjct: 416  DLMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQD 475

Query: 461  VGRALQMPYSQVDRLCKLI-------PNDPAHPVSLQAIADDSRFREARLA-----DPSV 508
            + RA  +P+ ++ ++  L+       P +    +      D   + E          P  
Sbjct: 476  LCRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPED--EDPPTWGEVLQEIGGELAPYA 533

Query: 509  DR---LLEISQKLEGLYRHASTHAAGIVIGDRPLS-QLVPMYRDVRSDLPVTQFNMKWIE 564
             +   L  + +++  + R    H AG+++   P+   L+P  R   +D+  TQF+M  +E
Sbjct: 534  KKYPDLFNLMEQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDMYELE 593

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV------------------DLSLIP-FDD 605
            + G +K D L  K L +L  + D + +R                       L+     +D
Sbjct: 594  ELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVITLNEERYLND 653

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI---DNIVVYN 662
               Y  +    T G+FQ+ +    +     +P  + D+  L S+ RPG       +  Y 
Sbjct: 654  PAIYDQIDRGQTAGLFQVNTPAGTKLAMRFRPRSVVDMADLASINRPGVTRVPGLLDKYI 713

Query: 663  NRKNGKEKIVSIHPLIDPMLKE-----TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
             R++G+E++   HPL++ +        T G+++YQEQ+++ A+ L+G++  EA+ LR+ +
Sbjct: 714  ERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAERLRKGI 773

Query: 718  GKKIKEEMDKQKERFISGASKN------GISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            GKK  E +++ + +F+ G   N      G ++ +A  I++ L     Y FNKSH   YA+
Sbjct: 774  GKKKMEIINELEPKFLDGCMANPEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHGVGYAL 833

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
               Q AW+K +Y  EF+   + +     +K  +F ++ RQ    ++PP VN     F + 
Sbjct: 834  QPCQEAWVKHYYFDEFITGCLVIH---TDKTIRFLRECRQRKRAVLPPDVNQSGAGFTLT 890

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR-VLESLVFAGA 890
            D  I + L  I G+G      I+   A++PF  L+DF +R       ++ V+++L+  GA
Sbjct: 891  DEGIRFGLTDISGIGDAAMPDIL---ANRPFKDLDDFLARASKSGGAKKGVVDALIKVGA 947

Query: 891  LDCFGYSRMQLLQSLDNIQK----YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             D  G  R  +L+ +   ++      +W + +   +   I A  +    D      ++ E
Sbjct: 948  FDFTGEHRQVMLEKVYRHRRGLSAPVKWAKMSLDEQVAEIAAKRRVKPED---YPVYNFE 1004

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +     + E  +LG + S  P+  Y  ++    I+   +      G+   +   +V  + 
Sbjct: 1005 DPQFIHDLEVEMLGTFVSYDPMAKYARMIDGECIRHPMDYDDFEPGDRFCVGGKLVKART 1064

Query: 1007 KKTRKGSRIGWVTF----SEPAKEYEANFF 1032
             + + G ++ ++       +    +E   F
Sbjct: 1065 HRQKNGKQMAFLAVHWNEED----FEILAF 1090


>gi|58038349|ref|YP_190318.1| DNA polymerase III alpha subunit [Gluconobacter oxydans 621H]
 gi|71151825|sp|Q5HXU1|DNAE2_GLUOX RecName: Full=Error-prone DNA polymerase
 gi|58000763|gb|AAW59662.1| DNA polymerase III alpha subunit [Gluconobacter oxydans 621H]
          Length = 901

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 221/757 (29%), Positives = 345/757 (45%), Gaps = 35/757 (4%)

Query: 288  HAPILP-RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
             +P++P RF   E +   +  +  L     A L  R   GA        +   ++  EL 
Sbjct: 112  RSPLIPGRFNPTETERTGESAQETLTRLVQAALPRRYPAGA------PPEVETQIAHELR 165

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            +I  + ++ YFL V   ++ A+   I V  GRGS A S   Y L IT IDP+R  LLFER
Sbjct: 166  LIGSLSYAPYFLTVNTIVRHARSLGI-VCQGRGSAANSAVCYVLGITSIDPVRSGLLFER 224

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            F++ +R   PD D+DF  DRR+EVI+++   YG  R A   T    Q K ALR+VG+ L 
Sbjct: 225  FISTERQEPPDIDVDFESDRREEVIQWIYRHYGRHRAALCATVQRYQPKGALREVGKVLG 284

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
            +P     +L K I +  A P   +A A D       L D  +     +++ L G  R   
Sbjct: 285  LPEDLTGQLSKHIASSLADPDLCKARAADLGLN---LKDRRLSLTFHLARLLLGFPRQLG 341

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            TH  G V+ +  L +LVP+         +  ++   I+    +K D LGL  L  L++  
Sbjct: 342  THPGGFVLTEDRLDELVPLMPTAMDGRQIIVWDKDDIDVLRFMKVDVLGLGMLGCLRRGF 401

Query: 587  DFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            + L      ++DL+ IP +D +TY ++    TLG FQ+ES      L  M+P    D++ 
Sbjct: 402  ELLHTVYQTRMDLAAIPAEDPQTYRMVQKADTLGTFQIESRAQMSMLPRMKPATFYDLVI 461

Query: 646  LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
             V++ RPGPI  D +  Y  R+   E +      +  +L +T GV ++QEQ MQ+A   +
Sbjct: 462  QVAIVRPGPIQGDMVHPYLRRREKLEPVTYPSETLRGILGKTLGVPLFQEQAMQVAIHCA 521

Query: 704  GYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            G++  EAD LRRAM   K+   +   +++ ++G   NG  +  A   F  L  F  YGF 
Sbjct: 522  GFTPGEADQLRRAMATFKMTGGVSPFRDKLVNGMLANGYEQEFAEQTFAQLEGFGSYGFP 581

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            +SHAA++A+I+Y +AWMK HYP  F AA +  +        +  QDA++  +++ P  +N
Sbjct: 582  ESHAASFALIAYASAWMKCHYPDVFCAALLNSQPMGFYAPSQIVQDAQRHGVEVRPICIN 641

Query: 823  TPCVDFKVGDNRI------YYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSK 875
                D  +   R             +KG+       ++ A    P ++S++D   R D  
Sbjct: 642  ASRWDCTLERGRNGRHAAVRLGFRMVKGLANGHGAALIAARM--PDYESIDDVWRRADV- 698

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
                  L+ L  A A   FG  R   L S+  +   A  + +                  
Sbjct: 699  --PVAALKCLAEADAFRVFGQMRRAALWSIKGLADTALPLFEAADRGRNFPL---PEVIE 753

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
             +ITL   S   S      + R  G   +GHP+   +  LRK GI    +      G  I
Sbjct: 754  PEITLPMMSERAS---VHEDYRATGLSLNGHPVAFLREGLRKEGIVRCGDLPYLRDGRRI 810

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +L  +V+ +Q+  T  G+   +VT  +         +
Sbjct: 811  QLTGLVLMRQRPGTANGTM--FVTIEDETGTANLIVW 845


>gi|212695654|ref|ZP_03303782.1| hypothetical protein ANHYDRO_00171 [Anaerococcus hydrogenalis DSM
            7454]
 gi|212677327|gb|EEB36934.1| hypothetical protein ANHYDRO_00171 [Anaerococcus hydrogenalis DSM
            7454]
          Length = 754

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 217/644 (33%), Positives = 351/644 (54%), Gaps = 28/644 (4%)

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD DIDFC + RD V+ YV + YG + V+QI+TFG ++A+ A+RDVGR + + + +VD+
Sbjct: 1    MPDIDIDFCYENRDRVVDYVYDLYGKDHVSQIVTFGRMKARNAIRDVGRVMDISFKKVDK 60

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            + KLIP      +  +A+ +  +       D    R+++ ++ +E L RH S HAAG+VI
Sbjct: 61   IAKLIPQAIGMTID-KALENTEKLAYEYENDVETKRMIDTARNIENLPRHTSIHAAGVVI 119

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
                L+ +VP+   + +D  VTQFNM  IE+ GL+K DFLGL+ LT++Q ++  + + + 
Sbjct: 120  SKEILTDIVPL--ALSNDQIVTQFNMTEIEELGLLKMDFLGLRNLTVIQDTIKDVKKYKN 177

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            + ++L  I  +D +         T+GIFQ ES+GMR  L+ ++P   +D++A  SL+RPG
Sbjct: 178  IDINLDNIDENDPKVLEQFRKAETIGIFQFESAGMRNFLKNLKPTRFDDLVAANSLFRPG 237

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  Y   K   + +  I P + P+L+ T G+I+YQEQVMQI Q L+G+SL EAD L
Sbjct: 238  PMDQIPNYIKNKMHPQNVSYIDPSLKPILEVTYGIIVYQEQVMQIVQQLAGFSLGEADNL 297

Query: 714  RRAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGF 761
            RRAM KK    M+  +E F+             G   NGIS+  A  I++ +  FA Y F
Sbjct: 298  RRAMSKKKMSVMEANREIFVHGKKDAKGNYEVLGCVNNGISEKNANKIYDEMISFAKYAF 357

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NKSH+AAY++++ QTA++K ++  E++A  +T  M +  K+  +  +A++  I+I+PP +
Sbjct: 358  NKSHSAAYSLVAIQTAYLKCYFKEEYMANLLTSIMGDSSKVYLYISEAKRLGIEIVPPDI 417

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---DSKKLN 878
            N     F    N+I + ++AIK VG      I++   +K + + +DF  R+   D   LN
Sbjct: 418  NKSERRFIAEKNKIIFGMSAIKNVGDNLIDLIVKIRDEKKYKTFKDFLERIEANDPTALN 477

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSD 936
            ++ LESL+ +GA D  GY R +L+   +   +     EK       N+  F  +     D
Sbjct: 478  KKALESLIKSGAFDSLGYKRSELIAVHETALQSIHDNEKVNLKGQMNLLDFDQKDQNEQD 537

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------ 990
             I     +   +  +   E+ VLGFY S HPL+     ++K      E            
Sbjct: 538  DIKFPPVNEYKNKQKLSLEKEVLGFYISDHPLNSLSDRVKKYTNFSTEILSELRPIDLDK 597

Query: 991  -RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 + +A ++ +K +  T+K + + + T  +     E   FP
Sbjct: 598  YDNKEVVMAGVITNKSETMTKKNTLMAFSTLEDMYGSIEMIIFP 641


>gi|218780427|ref|YP_002431745.1| DNA polymerase III, alpha subunit [Desulfatibacillum alkenivorans
           AK-01]
 gi|218761811|gb|ACL04277.1| DNA polymerase III, alpha subunit [Desulfatibacillum alkenivorans
           AK-01]
          Length = 880

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 279/895 (31%), Positives = 434/895 (48%), Gaps = 48/895 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL VHS +S + G      +  K       A A+TD N ++ A+ F   A   G+  +
Sbjct: 2   FAHLHVHSGFSFMYGTFLPEALAAKAKEAGFNAAALTDKNGVYGAVRFCAAAEKLGVHAV 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG QL I+ +D+                +VLL  + +GY  L  L++  +  + G +   
Sbjct: 62  IGTQLTIEGRDD----------------LVLLAKSPKGYNNLCRLITLAH--EYGPRDQP 103

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS---SQVAEKRLLTFKKLF-GDRLYVNL 186
            C      + +  ++ LTGG  G   +          + A   +   +++F  + +YV +
Sbjct: 104 ACPEKFLALHSRDIVCLTGGRDGRFFKLVEGADGTQYRRACGWVWRLQEIFGKENVYVEI 163

Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           Q     YD      + ++A     PL ATN+ + L   D   H  L+ +  + V  +  +
Sbjct: 164 QNAGTPYDARIMHIMARVAEKAGAPLAATNDVVCLEPGDLPVHHALVDIQ-NQVHHRACQ 222

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R + ++YLK++ EM  +     +ALENT  IA  C  +L +     P F          
Sbjct: 223 ARESREYYLKSQEEMAKLIPY-SQALENTGIIAHECQAMLPLGKSSPPVFPVPPGM---- 277

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            ++  L       L  R     +       D  QRL+ EL  I R   SGYFL+V +   
Sbjct: 278 SQDQALAKLCYRSLARRFNPLEL-------DVLQRLEKELGHIRRRDLSGYFLLVKEIHS 330

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +AK   I  G  RGS AGS+  + L    ++PL   LLFERFLN  R+ MPD D+DF   
Sbjct: 331 FAKARRIR-GTVRGSAAGSLVLHLLL-GGVNPLEHRLLFERFLNNGRLDMPDVDMDFDSL 388

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RRDE+  Y+  KY   + A + T  + +A+ ALR +GRAL   Y ++DRL + +P+    
Sbjct: 389 RRDEIFEYLMEKYP-NQAAMVATVSTFRARGALRSLGRALGYSYEKIDRLTQFVPHFLRS 447

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               +AI        + L     D LL +++K+ GL  + S H  G+V+    +    P+
Sbjct: 448 HDIRKAIERMPELEGSPLLQE--DELLWLAEKISGLPHNLSVHLGGMVLTPGEIFNWSPL 505

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
               +  +PV QF+   +E  GL+K D LGL+  + +Q  ++ L ++GV++ L  +P DD
Sbjct: 506 QTSRK-GIPVVQFDKDDVEALGLVKLDILGLRMHSAIQFGVELLEKKGVRLCLDEVPLDD 564

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
             T+ +L T  ++G+FQ+ES G RQ L  +QP   EDIIA +SL+RPGP+   +   Y  
Sbjct: 565 PATFRMLRTTDSVGVFQVESPGQRQLLGRLQPRHFEDIIAEISLFRPGPMSGAMVEPYVL 624

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
           R+N KE +   HP + P+LK T GV+++QEQ+++IA  ++G    E D +RR++ KK   
Sbjct: 625 RRNNKEPVTYPHPDLRPILKSTFGVVLFQEQILEIAHDIAGMPYGEGDRMRRSLSKKAPR 684

Query: 724 EMDKQKER-FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + ++ E  F+ G  K G     A   F+L+A F  YGF K+HAA++A I+YQ+A++KTH
Sbjct: 685 AVFREMEEAFVKGCLKKGYDNPTAQAFFDLVASFMGYGFCKAHAASFAHITYQSAYLKTH 744

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
           YP+ F    +  E            +AR+  I ++ P VN   V +   +  I   L  I
Sbjct: 745 YPLAFYFGILNAEHVGSYPHSVILNEARRMGIPVLQPHVNKSGVQYLEENGGIRIPLIRI 804

Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           K +G      I+       F S +DF  RV      R  LE    AGAL     +
Sbjct: 805 KNIGPKYCEKIILEREKGLFLSADDFTKRVSLPAKARFSLE---KAGALKGLDGA 856


>gi|289705560|ref|ZP_06501952.1| DNA polymerase III, alpha subunit [Micrococcus luteus SK58]
 gi|289557789|gb|EFD51088.1| DNA polymerase III, alpha subunit [Micrococcus luteus SK58]
          Length = 1232

 Score =  633 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 276/1097 (25%), Positives = 466/1097 (42%), Gaps = 95/1097 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL V S++S   G     +++   AA     +A TD + L+   +        GI P
Sbjct: 13   PFAHLHVASAFSAHYGVSWPEDLVAAAAAADMDLLACTDRDGLYGMAKHVGACLRHGITP 72

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G         +L +          V  +        GY+ L ELVS  +    G  + 
Sbjct: 73   IVGV--------DLAVRWSEDEEAGRVVVLARGGCHGSGYRSLCELVSAAHARTTGGAAG 124

Query: 130  RICLSWLQEIGTEG-----------------LIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
                + + E+                     L +L G  S  + R             L 
Sbjct: 125  GSPWASVAELAAAAAGRVPTAANRDNPPTPELFVLLGPDS-DVGRHLARRRYAAGLTALR 183

Query: 173  TFKK-LFGDRLYVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
             +K  L     + ++  H     R  D     + ++ A    +P V TN   + + +   
Sbjct: 184  RWKAALPAGSPHADVVTHLSAPGRRLDTGHAVKTLRAARQARIPAVLTNAVRYAAPDGAA 243

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--------LENTVEIA 278
              DVL AV   + +      +     +LK+ + M  I  ++  A        LE T  +A
Sbjct: 244  TADVLDAVRALSSLDALHDLQPNGQGWLKSTAAMHRIAHEIAFAADDRPAPLLEATRRLA 303

Query: 279  RRCSFILQVHAPI-LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ-----GAIAKGY 332
              C+   +      +PR  E     I    E+ LR +   GL  R        G      
Sbjct: 304  EACALDPETDLGWGVPRVPEAAVIGIDGPPEHVLRERTRTGLLARYPHLHTGGGLPGTSQ 363

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
             A+D + R + EL +I R+ FS YFL VA  +   +   I V   RGSGA S+  +AL I
Sbjct: 364  AARDLQDRAEHELGIITRLGFSSYFLTVAAVVDLIEGMGIRVA-ARGSGASSLVNHALRI 422

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            + +DP+   L+ ERFL+ DR ++PD DID    RR E+   V  ++G ER   +    + 
Sbjct: 423  SHVDPMANGLIMERFLSTDRSTLPDIDIDVESARRHEIYHAVVERFGAERTTLMSMQNAY 482

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPA--HPVSLQAIADDSRFREARLA-----D 505
            +A+ A+RD G AL MP  +VD + K +    A     +LQ + +         +     D
Sbjct: 483  RARGAVRDAGLALGMPEPEVDAIAKQLWRFSASNFREALQRMPELGGLSRRIESGRAEGD 542

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
              +D L++++++L+ L RH S H  G+++GD  L    P+       LP++QF+   ++ 
Sbjct: 543  RQLDLLVDLTERLDRLPRHISMHPCGVILGDATLLHRTPVQPSGM-GLPMSQFDKHDMDP 601

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             G +K D LG++  + +  ++  + +    ++DL  +P DD  TY ++ T  TLG FQ+E
Sbjct: 602  MGFLKLDILGVRMQSAIAYTIAEVERTTGERIDLEQVPLDDPATYAMIRTTHTLGCFQIE 661

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPML 682
            S G R+ +  + P    D+   +SL+RPGP+ + +   +  +++G       HP + P+L
Sbjct: 662  SPGQRELVGKLAPREFNDLTVDISLFRPGPMQSDMVRPFLEQRHGWAPAHYPHPDLRPVL 721

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
             ET GV ++ EQV++   +++G  L+ AD  RR +G   +  ++   E F +GA   G S
Sbjct: 722  AETHGVTVFHEQVLRTMDVMTGCGLARADEHRRLLGGPQEHLVE---EAFRTGALARGYS 778

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              +   ++  L+ F  +GF K+H AA+AV +Y +AW+KTH+P  F+AA +  +   +   
Sbjct: 779  LDVIDEVWATLSAFGSFGFCKAHGAAFAVPTYHSAWLKTHHPAAFMAAILEHDP-GMYPA 837

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGD--------------NRIYYSLAAIKGVGTT 848
            +    +AR+  I ++P  VN       V                  I   L ++ G+   
Sbjct: 838  RLMVAEARRMGIPVLPVDVNASSRHVHVEWVPAHPEVDDGAPGRWGIRLPLTSLSGLSEA 897

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF----GYSRMQLLQS 904
                +    A +P+ SL D   R      N   LE L   GALDC     G SR  L+  
Sbjct: 898  ETDRL---DAGRPYRSLADVRDRARPTARN---LERLAQLGALDCLLPPGGASRTDLVHH 951

Query: 905  LDNIQ---------KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
            L+            + A      R  + E   A +            F     + R   E
Sbjct: 952  LELQHSTTRGTAPGRTAPRSRSARPRQVEGQLALDLPDTELTALAPLFPEPGPAARVRTE 1011

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
              +     + H +D + P L  +G+   ++ +     + + +A + V+ Q    R G R+
Sbjct: 1012 LELTALDVTAHLMDSHAPYLDALGVTRAKDLLGLRTQSRVLVAGVRVATQTPPMRSGKRV 1071

Query: 1016 GWVTFSEPAKEYEANFF 1032
             +++  +     +A+FF
Sbjct: 1072 VFLSVDDGTGCVDASFF 1088


>gi|184200802|ref|YP_001855009.1| error-prone DNA polymerase [Kocuria rhizophila DC2201]
 gi|183581032|dbj|BAG29503.1| error-prone DNA polymerase [Kocuria rhizophila DC2201]
          Length = 1235

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 271/1149 (23%), Positives = 473/1149 (41%), Gaps = 140/1149 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL V S++S   G      +    A      +A TD + L+ A++        GI P+
Sbjct: 3    FPHLHVASAFSAHYGVARPEELARAAAGQGAEILACTDRDGLYGAVKHVLACQEHGIAPV 62

Query: 71   ---------IGCQLDIDMQD----------NLKMTNQGKTPFPT---------------- 95
                        Q                        G  P P                 
Sbjct: 63   LGVDLALLREPVQHAGAPGGARPRAGSTPQRGGAVRPGGNPVPARGNGSGPGSGSAGPVR 122

Query: 96   -----------------VPSIVLLVSTAEG---YQRLIELVSRMYLLDQGKQSVRICLSW 135
                             V  +V+L +  +G   Y  L  LVS  +       +  I L+ 
Sbjct: 123  PGSAAARGGRRTAAPRVVGRVVVLATGHDGGSGYAALCRLVSAAHRSHDRAAASPIGLTA 182

Query: 136  LQEI---------GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-KLFGDRLYVN 185
             Q           G  GL++L G  S    R       + A + L  ++ +L    L V 
Sbjct: 183  AQLARHVHRAARSGEPGLVVLVGPDSDA-GRLLARRHYRGAREALNRWRARLPPGALVVE 241

Query: 186  LQRHRGYDRYRES-----QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
               H        S     ++ +L    ++P+V +N   +         DVL A      +
Sbjct: 242  TTTHLAPQGEALSTGHAVRLYELGRAADVPVVLSNAVRYAHPGQAVTADVLDAARTLMSL 301

Query: 241  S-----QKDRPRVTPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARRCSFI 284
                   +   +     +LK+   M  +  ++  A           L +T  +A RC   
Sbjct: 302  DELAGADRGVLQPNGQGWLKDGPRMERLAHEIVTAARVDRDTPARLLVDTHHLAERCRLD 361

Query: 285  LQVHAPI-LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK---GYHAQDYRQR 340
             Q    I  P   E     +  + + EL  +  AGL    A     +   G + +  R+R
Sbjct: 362  PQGDLGIGTPVIPEASVLGLSGDPDRELARRCYAGLARLHAGEDWDRTVPGLNRESLRER 421

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L+ EL+VI+++ F+GYFL V +        ++     RGSG  S+  + L I+  DPL +
Sbjct: 422  LERELSVISQLGFAGYFLTVGEVSDLMSAMDVR-HAARGSGVSSLVVHLLGISPADPLEY 480

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             L+FERFL+P R ++PD DID    RR +V R +  ++G  RV  +    + +++ A+RD
Sbjct: 481  DLVFERFLSPLRPNLPDIDIDMESARRHDVYRRIFERFGPRRVTLMSMQNAYRSRGAVRD 540

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPV--SLQAIADDSRFREARLADPSVDRLLEISQKL 518
             G AL +    VD +   +   P   +   +    + +   +    +  +D L++++++L
Sbjct: 541  AGLALGLGPQDVDHVAGQLWRVPGGTLREEISRRPELAPLAQRLRDNRQMDLLVDLTERL 600

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            + L RH S H  G+++ D  L    P+       LP++Q++   ++  GLIK D LG++ 
Sbjct: 601  DRLPRHISMHPCGVILSDTTLLDRTPVQ-ASGIGLPMSQYDKHDMDPMGLIKLDILGVRM 659

Query: 579  LTLLQKSLDFLAQRGVK---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
             + L  ++  +A+        DL  +P DD +T+ L+++  TLG FQ+ES G R+ +  M
Sbjct: 660  QSTLAHAVAEVARLHPHEALPDLDTMPRDDPDTFRLISSTHTLGCFQIESPGQRELIGTM 719

Query: 636  QPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
             P+   D++  +SL+RPGP+   +   Y + ++G    V  HP ++ +L ET+GV +Y E
Sbjct: 720  GPEEFNDLVVDISLFRPGPMQANMVRPYLDARHGWSTPVYPHPDLEEILAETRGVAVYHE 779

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            Q+M+I   ++G  L  ADV RR +G   +E ++     F  GA   G ++ +   ++E+L
Sbjct: 780  QIMRIMDRMTGCGLGRADVWRRLLGSPGEEPVETA---FREGARARGYTRAVIDTVWEIL 836

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              F  +GF K+H  A+AV +YQ+AW+KTH+P  F+A     +   +   +    +AR+  
Sbjct: 837  HAFGSFGFCKAHGVAFAVPTYQSAWLKTHHPEAFMAGVWEHDP-GMYPARLLVGEARRMG 895

Query: 814  IQIMPPSVNTPCVDFKV------------------------GDNRIYYSLAAIKGVGTTT 849
            I ++ P VN      +V                        G   I  SL+AI G+ +  
Sbjct: 896  IPVLGPDVNRSGEHHRVEAVTPRPGTVVSGDLDAGIPHTQDGAWGIRMSLSAITGISSAE 955

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY------SRMQLLQ 903
               ++   A +P+   E+  +     + +RR L+ L  AGALD   +      SR  ++ 
Sbjct: 956  IERLL---AGQPY---ENLAAVRARARPSRRSLQRLATAGALDGLLHGSGTRASRADMVH 1009

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L +  +        RT   +   A   G         +        R   E   +    
Sbjct: 1010 FLTDRAQLPARGSAGRTGPGQGQLALPLGDVDLTSLPARLPELTPQERVRAEMETMDIEV 1069

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S H +D +  ++R       ++ +    G+ + +A + VS      R G R+ +++  + 
Sbjct: 1070 SAHLMDSHAELVRAYRATRAQDLLGLRSGSEVVVAGVRVSTMTPPMRSGRRVVFISLDDG 1129

Query: 1024 AKEYEANFF 1032
            +   +  FF
Sbjct: 1130 SGAVDCTFF 1138


>gi|239917574|ref|YP_002957132.1| DNA-directed DNA polymerase III PolC [Micrococcus luteus NCTC 2665]
 gi|239838781|gb|ACS30578.1| DNA-directed DNA polymerase III PolC [Micrococcus luteus NCTC 2665]
          Length = 1232

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 275/1097 (25%), Positives = 466/1097 (42%), Gaps = 95/1097 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL V S++S   G     +++   AA     +A TD + L+   +        GI P
Sbjct: 13   PFAHLHVASAFSAHYGVSWPEDLVAAAAAADMDLLACTDRDGLYGMAKHVGACLRHGITP 72

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G         +L +          V  +        GY+ L ELVS  +    G  + 
Sbjct: 73   IVGV--------DLAVRWSEDEDAGRVVVLARGGCHGSGYRSLCELVSAAHARTTGGAAG 124

Query: 130  RICLSWLQEIGTEG-----------------LIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
                + + E+                     L +L G  S  + R             L 
Sbjct: 125  GSPWASVAELAAAAAGRVPTAANRDNPPTPELFVLLGPDS-DVGRHLARRRYAAGLAALR 183

Query: 173  TFKK-LFGDRLYVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
             +K  L     + ++  H     R  D     + ++ A    +P V TN   + + +   
Sbjct: 184  RWKAALPAGSPHADVVTHLSAPGRRLDTGHAVKTLRAARQARIPAVLTNAVRYAAPDGAA 243

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--------LENTVEIA 278
              DVL AV   + +      +     +LK+ + M  I  ++  A        LE T  +A
Sbjct: 244  TADVLDAVRALSSLDALHDLQPNGQGWLKSTAAMHRIAHEVASAADDRPAPLLEATRRLA 303

Query: 279  RRCSFILQVHAPI-LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ-----GAIAKGY 332
              C+   +      +PR  E     I    E+ LR +   GL  R        G      
Sbjct: 304  EACALDPETDLGWGVPRVPEAAVIGIDGPPEHVLRERTRTGLLARYPHLHTRGGLPGTSQ 363

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
             A+D + R + EL +I R+ FS YFL VA  +   +   I V   RGSGA S+  +AL I
Sbjct: 364  AARDLQDRAEHELGIITRLGFSSYFLTVAAVVDLIEGMGIRVA-ARGSGASSLVNHALRI 422

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            + +DP+   L+ ERFL+ DR ++PD DID    RR E+   V +++G ER   +    + 
Sbjct: 423  SHVDPMANGLIMERFLSTDRSTLPDIDIDVESARRHEIYHAVVDRFGAERTTLMSMQNAY 482

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPA--HPVSLQAIADDSRFREARLA-----D 505
            +A+ A+RD G AL MP  +VD + K +    A     +LQ + +         +     D
Sbjct: 483  RARGAVRDAGLALGMPEPEVDAIAKQLWRFSASNFREALQRMPELGGLSRRIESGRAEGD 542

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
              +D L++++++L+ L RH S H  G+++GD  L    P+       LP++QF+   ++ 
Sbjct: 543  RQLDLLVDLTERLDRLPRHISMHPCGVILGDATLLHRTPVQPSGM-GLPMSQFDKHDMDP 601

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             G +K D LG++  + +  ++  + +    ++DL  +P DD  TY ++ T  TLG FQ+E
Sbjct: 602  MGFLKLDILGVRMQSAIAYTIAEVERTTGERIDLEQVPLDDDATYAMIRTTHTLGCFQIE 661

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPML 682
            S G R+ +  + P    D+   +SL+RPGP+ + +   +  +++G       HP + P+L
Sbjct: 662  SPGQRELVGKLAPREFNDLTVDISLFRPGPMQSDMVRPFLEQRHGWAPAHYPHPDLRPVL 721

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
             ET GV ++ EQV++   +++G  L+ AD  RR +G   +  ++   E F +GA   G  
Sbjct: 722  AETHGVTVFHEQVLRTMDVMTGCGLARADEHRRLLGGPQEHLVE---EAFRTGALARGYP 778

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              +   ++  L+ F  +GF K+H AA+AV +Y +AW+KTH+P  F+AA +  +   +   
Sbjct: 779  LEVIDEVWATLSAFGSFGFCKAHGAAFAVPTYHSAWLKTHHPAAFMAAILEHDP-GMYPA 837

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGD--------------NRIYYSLAAIKGVGTT 848
            +    +AR+  I ++P  VN       V                  I   L ++ G+   
Sbjct: 838  RLMVAEARRMGIPVLPVDVNASSRHVHVEWVPAHPEVDDGAPGRWGIRLPLTSLSGLSEA 897

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF----GYSRMQLLQS 904
                +    A +P+ SL D   R      N   LE L   GALDC     G SR  L+  
Sbjct: 898  ETDRL---DAGRPYRSLADVRDRARPTARN---LERLAQLGALDCLLPPGGASRTDLVHH 951

Query: 905  LDNIQ---------KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
            L+            + A      R  + E   A +            F     + R   E
Sbjct: 952  LELQHSTTRGTAPGRTAPRSRSARPRQVEGQLALDLPDTELTALAPLFPDPGPAARVRTE 1011

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
              +     + H +D + P L  +G+   ++ +     + + +A + V+ Q    R G R+
Sbjct: 1012 LELTALDVTAHLMDSHAPYLDALGVTRAKDLLGLRTQSRVLVAGVRVATQTPPMRSGKRV 1071

Query: 1016 GWVTFSEPAKEYEANFF 1032
             +++  +     +A+FF
Sbjct: 1072 VFLSVDDGTGCVDASFF 1088


>gi|188024087|ref|ZP_02996828.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 7
            str. ATCC 27819]
 gi|188019132|gb|EDU57172.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 7
            str. ATCC 27819]
          Length = 969

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 305/1008 (30%), Positives = 498/1008 (49%), Gaps = 100/1008 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F++L VHS YSLL  ALS+++++     + QP + +TD NN++  +EF  KA A  + PI
Sbjct: 2    FINLNVHSYYSLLNSALSIDDLIQHALDNNQPYVCLTDLNNMYGCIEFYDKAKAHNLIPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + +                     ++V       GY +LI+  S +           
Sbjct: 62   IGLEFEY-----------------QNTTLVAYAKNYNGYLKLIKWSSWIMTNTTF----- 99

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                 +QE   + +I+      G +                     +F +  +   Q   
Sbjct: 100  ----IIQEDFDDLIIV---CKKGGL---------------------VFENPNFYQAQNQN 131

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              +                  +A  +  +  E D      ++A+ +   +          
Sbjct: 132  ASNA-----------------IALQSVFYAQENDKTVFLAMLAIKNDLKLDDFIDCHEFD 174

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +Y  N  E  S+FS +  AL+N  ++       +    PI     +K    +  E    
Sbjct: 175  KNYFLNDHEAQSLFSTI--ALDNLNKVLNELQVEIHD-LPINIPVYDKNNLTVSSEI--- 228

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L+   ++GL+ RL       G   + Y QRL +EL+VI+  +F  YFLIV DFI +AK N
Sbjct: 229  LKQLCISGLKQRLNAH---DGQVKKAYAQRLKYELDVISEKQFDDYFLIVYDFINYAKSN 285

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D   ++RD+V
Sbjct: 286  GIIVGPGRGSAAGSLVAYCLYITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKRDQV 345

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I Y+  KYG++ VA I+TF  L+AK ALRDVGR L +    +D++CK I  D    + L 
Sbjct: 346  IEYLFEKYGNDHVAYIVTFQRLKAKMALRDVGRILGIDLKVIDKICKNIKTDYDEDIDL- 404

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            AI   +  +E  +       L EIS+KL    R   THAAGI++ +  ++ ++P+   + 
Sbjct: 405  AIKKSATLKEMYV---LHKELFEISKKLIHAPRQIGTHAAGIILSNSSITNIIPIQLGIN 461

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
             D P++Q++M+++E+ GLIK D LGLK LT++   L  +   +  K+DL  I ++D   +
Sbjct: 462  -DRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIYKTQNKKIDLFNIDYNDKFVF 520

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
              L    T GIFQLES GM++ L  ++P  IEDI  + +L+RPGP  NI  +  R+  +E
Sbjct: 521  QDLAKAKTNGIFQLESPGMKKVLLKVKPQNIEDISIVSALFRPGPQQNIKTFVERRFKRE 580

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +    +     +L+ T G+IIYQEQV+++ + ++ + ++ +D  RRA+ K+ ++ + + K
Sbjct: 581  EFSYWNEQTKKILEPTYGIIIYQEQVIELVKTIANFDIATSDNFRRAISKEDEKILMQLK 640

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI+GA  N   + +   IFE +  FA YGFN SH+ AY+ ISY  A++K +YP+EFL+
Sbjct: 641  DDFINGALANNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYPLEFLS 700

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVGT 847
              ++    + EK+  +  +A+ FNI I  P +     DF + +++  I +    IKG G 
Sbjct: 701  VLLSHTSASKEKLLSYLDEAKDFNISIKGPDIQHFSNDFVIDNHKQIIRFGFKTIKGFGD 760

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               + I  A  +        +   +    ++ + +E L+  GA D F  +R+ LL +L+ 
Sbjct: 761  ELLKKIKLALENAELSDYISYIDALKKGNISLKNIEILIRIGAFDSFEINRLFLLNNLEE 820

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF-ENEQRVLGFYFSGH 966
            I +     +        ++         + + L+  +  + + RF E+E + LG   S  
Sbjct: 821  IFE-----KTGLNGHFFDL---------NLVGLDYANDMSINERFQEDEIQYLGINLSSL 866

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGS 1013
                Y   +    +K   ES   I  N  + + A V++  Q KT+KG+
Sbjct: 867  NYTNYTNEIDYSNLKYEIESFNEINTNYEVNIVAQVLNIVQSKTKKGN 914


>gi|209554072|ref|YP_002284852.1| DNA polymerase III DnaE [Ureaplasma urealyticum serovar 10 str. ATCC
            33699]
 gi|209541573|gb|ACI59802.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 10
            str. ATCC 33699]
          Length = 969

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 304/1008 (30%), Positives = 497/1008 (49%), Gaps = 100/1008 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F++L VHS YSLL  ALS+++++     + QP + +TD NN++  +EF  KA A  + PI
Sbjct: 2    FINLNVHSYYSLLNSALSIDDLIQHALDNNQPYVCLTDLNNMYGCIEFYDKAKAHNLIPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + +                     ++V       GY +LI+  S +           
Sbjct: 62   IGLEFEY-----------------QNTTLVAYAKNYNGYLKLIKWSSWIMTNTTF----- 99

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                 +QE   + +I+      G +                     +F +  +   Q   
Sbjct: 100  ----IIQEDFDDLIIV---CKKGGL---------------------VFENPNFYQAQNQN 131

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              +                  +A  +  +  E D      ++A+ +   +          
Sbjct: 132  ASNA-----------------IALQSVFYAQENDKTVFLAMLAIKNDLKLDDFIDCHEFD 174

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +Y  N  E  S+FS +  AL+N  ++       +    PI     +K    +  E    
Sbjct: 175  KNYFLNDHEAQSLFSTI--ALDNLNKVLNELQVEIHD-LPINIPVYDKNNLTVSSEI--- 228

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L+   ++GL+ RL       G   + Y +RL +EL+VI+  +F  YFLIV DFI +AK N
Sbjct: 229  LKQLCISGLKQRLNAH---DGQVKKVYAKRLKYELDVISEKQFDDYFLIVYDFINYAKSN 285

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D   ++RD+V
Sbjct: 286  GIIVGPGRGSAAGSLVAYCLYITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKRDQV 345

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I Y+  KYG++ VA I+TF  L+AK ALRDVGR L +    +D++CK I  D    + L 
Sbjct: 346  IEYLFEKYGNDHVAYIVTFQRLKAKMALRDVGRILGIDLKVIDKICKNIKTDYDEDIDL- 404

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            AI   +  +E  +       L EIS+KL    R   THAAGI++ +  ++ ++P+   + 
Sbjct: 405  AIKKSATLKEMYV---LHKELFEISKKLIHAPRQIGTHAAGIILSNSSITNIIPIQLGIN 461

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
             D P++Q++M+++E+ GLIK D LGLK LT++   L  +   +  K+DL  I ++D   +
Sbjct: 462  -DRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIYKTQNKKIDLFNIDYNDKFVF 520

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
              L    T GIFQLES GM++ L  ++P  IEDI  + +L+RPGP  NI  +  R+  +E
Sbjct: 521  QDLAKAKTNGIFQLESPGMKKVLLKVKPQNIEDISIVSALFRPGPQQNIKTFVERRFKRE 580

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +    +     +L+ T G+IIYQEQV+++ + ++ + ++ +D  RRA+ KK ++ + + K
Sbjct: 581  EFSYWNEQTKKILEPTYGIIIYQEQVIELVKTIANFDIATSDNFRRAISKKDEKILMQLK 640

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI+GA  N   + +   IFE +  FA YGFN SH+ AY+ ISY  A++K +YP+EFL+
Sbjct: 641  DDFINGALANNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYPLEFLS 700

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVGT 847
              ++    + EK+  +  + + FNI I  P +     DF + +++  I +    IKG G 
Sbjct: 701  VLLSHTSASKEKLLSYLDETKDFNISIKGPDIQHFSNDFVIDNHKQIIRFGFKTIKGFGD 760

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               + I  A  +        +   +    ++ + +E L+  GA D F  +R+ LL +L+ 
Sbjct: 761  ELLKKIKLALENAELSDYISYIDALKKGNISLKNIEILIRIGAFDSFEINRLFLLNNLEE 820

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF-ENEQRVLGFYFSGH 966
            I +     +        ++         + + L+  +  + + RF E+E + LG   S  
Sbjct: 821  IFE-----KTGLNGHFFDL---------NLVGLDYANDMSINERFQEDEIQYLGINLSSL 866

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGS 1013
                Y   +    +K   ES   I  N  + + A V++  Q KT+KG+
Sbjct: 867  NYTNYTNEIDYSNLKYEIESFNEINTNYEVNIVAQVLNIVQSKTKKGN 914


>gi|269124207|ref|YP_003306784.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM
            12112]
 gi|268315533|gb|ACZ01907.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM
            12112]
          Length = 1056

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 283/1023 (27%), Positives = 501/1023 (48%), Gaps = 85/1023 (8%)

Query: 15   QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            ++H+ YSLLEG  S+   + K   +    +AITD   +F+A++F     +  I PIIG +
Sbjct: 4    RIHTEYSLLEGVGSVEEYVQKARENNIKELAITDFG-MFAAIKFYNSCKSNNIVPIIGIE 62

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            + +          +G      + ++ LL    +G + + +L +  +  +       I L 
Sbjct: 63   IHL----------KGFLDQENIYTLTLLAKNEKGVKNIYKLSTISHERNF------ILLD 106

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR 194
             L E   + + +L+GG +  +      N  +  +K +    +     + + +      + 
Sbjct: 107  DLLE-HGKDIYILSGGVNSELVSYVLKNDYKKVKKLMEIMLEKL--DIILEIPMFEMLEY 163

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
             R     +L     +  +  N   +L +ED     +  A+  +  +      +     + 
Sbjct: 164  QRLM-FDKLVDELNVKSIEVNEIYYLEKEDKILQKIFAAIKENRTLKTVQNEKKQDGLHF 222

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
                            + N  +     + I  V       F   +  D   E+E  + N 
Sbjct: 223  I---------------INNQDKREDILNDIDIVLDNKNVEFPLVKLPDGLSEKE-YIINI 266

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
                +  +            ++ + R+++ELNVI +M +  YFLIV DFI++AK+N+I +
Sbjct: 267  LEKNIGKKYPN-------ITKEIQDRINYELNVIDKMGYIKYFLIVHDFIKYAKENDIFI 319

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
            GPGRGS AGS+ +Y L IT++DP+++ L+FERFLNP+R+SMPD D+D  Q++R ++I Y+
Sbjct: 320  GPGRGSAAGSIISYLLGITELDPIKYGLIFERFLNPERISMPDIDVDIEQEKRIDLIEYI 379

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            +  YG   V+QIITF + +   AL+D+ R  ++P      + KL+               
Sbjct: 380  KRTYGSRNVSQIITFSTFKPTLALKDLARVFEIPE---KSIRKLLDES-----------K 425

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
            +    E   +   V  L++ ++++EG  +++STHAAG++I    + + +P+  D  +   
Sbjct: 426  EKSLDELSDSKEMVKSLIDYAKRIEGKIKNSSTHAAGVIITKEDMRENLPLIYDSYTKDY 485

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT 614
              QF    +E  G +K D LGLK L +++  +  + +     +L     +  E ++LL T
Sbjct: 486  QIQFEANVLESLGYLKMDLLGLKNLNVVKNVIKKVNEDIDIYNL----PEYEEAFNLLNT 541

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKE-KI 671
              T+GIFQ ES G+ Q    ++   +EDI  L++LYRPGP+++  I      KN K  KI
Sbjct: 542  GNTIGIFQCESRGITQLAMNLKIHSLEDIALLLALYRPGPLESGLIPSLIVMKNNKNIKI 601

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
             ++ P+I+ +L  T GV++YQEQVM+IAQ +SGYSL++AD LR+A+GKK  E + + ++ 
Sbjct: 602  KTVDPMIEDILLPTYGVLVYQEQVMEIAQKISGYSLAKADELRKAIGKKNVELLKQNRKD 661

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            FI  A    I K  A  I++L+  F +YGFNK+HA +YA I+YQTA++K  YP EF A+ 
Sbjct: 662  FIENAI---IPKQRAEKIYDLIDNFGNYGFNKAHAISYANITYQTAYLKAKYPREFFASL 718

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            +T E+   +K+     +  + NI++ PPS+N    +F++ +N I   L+A+K +   TAR
Sbjct: 719  LTTELKVEKKLVNSYAEMLKRNIEMYPPSINRSTAEFEIEENGIRIPLSALKEMSEKTAR 778

Query: 852  HIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
             ++E    +  F  + DF +R   + LN+  LE L+++G  D F   R +L+ +L +I K
Sbjct: 779  EVVEEREKNGNFKDIFDFITRC--RFLNKSNLEGLIYSGCFDEFNIGRKKLIVNLQDIIK 836

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +     K++T+ + ++F +      ++    +    +     + E+  +           
Sbjct: 837  WIDKRNKSQTDIYSSLFLNMN-MEIEEYKWMETDEMSDDEIIKLEKEYVKLS-------- 887

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +R   I   E      + N   +   + S++ K T+K   +  V         E  
Sbjct: 888  ----MRNTQILKSELVYNIFKSNEY-VIGYIESEKSKVTKKNELMNIVNILSIEGSKEYL 942

Query: 1031 FFP 1033
             FP
Sbjct: 943  IFP 945


>gi|289763553|ref|ZP_06522931.1| DNA polymerase III alpha subunit dnaE2 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis GM 1503]
 gi|289711059|gb|EFD75075.1| DNA polymerase III alpha subunit dnaE2 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis GM 1503]
          Length = 861

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 222/772 (28%), Positives = 371/772 (48%), Gaps = 53/772 (6%)

Query: 268  PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
            P  +    E+  RC+F LQ+ AP LP F   +       E++ LR+  +AG   R     
Sbjct: 82   PRRVTAAAELGERCAFGLQLIAPRLPPFDVPDG----HTEDSWLRSLVMAGARERYGPPK 137

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
             A   ++     +++ EL VIA+++F GYFL+V D  ++ + N+I +  GRGS A S   
Sbjct: 138  SAPRAYS-----QIEHELKVIAQLRFPGYFLVVHDITRFCRDNDI-LCQGRGSAANSAVC 191

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            YAL +T +DP+   LLFERFL+P R   PD DID   D+R++VI+YV +KYG +  AQ+ 
Sbjct: 192  YALGVTAVDPVANELLFERFLSPARDGPPDIDIDIESDQREKVIQYVYHKYGRDYAAQVA 251

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
               + + ++A+RD+ RAL     Q D   K + +                  +A   D  
Sbjct: 252  NVITYRGRSAVRDMARALGFSPGQQDAWSKQVSHWTG---------------QADDVDGI 296

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
             +++++++ ++  L RH   H+ G+VI DRP++ + P+     ++  V Q++       G
Sbjct: 297  PEQVIDLATQIRNLPRHLGIHSGGMVICDRPIADVCPVEWARMANRSVLQWDKDDCAAIG 356

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+KFD LGL  L+ L  + D +A+   ++VDL+ +   +   Y +L    ++G+FQ+ES 
Sbjct: 357  LVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLDLSEPAVYEMLARADSVGVFQVESR 416

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKE 684
                 L  ++P    D++  V+L RPGPI       Y  R+NG + ++  HP + P L++
Sbjct: 417  AQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHPYIRRRNGVDPVIYEHPSMAPALRK 476

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASK-NGIS 742
            T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K+  E M + + RF  G    +G  
Sbjct: 477  TLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSKRSTERMRRLRGRFYDGMRALHGAP 536

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              +   I+E L  FA++GF +SHA ++A + + +AW K H+P  F AA +  +       
Sbjct: 537  DEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAWFKLHHPAAFCAALLRAQPMGFYSP 596

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI--YYSLAAIKGVGTTTARHIMEAS-AD 859
            +    DAR+  + +  P VN         +        L A++ +G   A  ++    A+
Sbjct: 597  QSLVADARRHGVAVHGPCVNASLAHATCENAGTEVRLGLGAVRYLGAELAEKLVAERTAN 656

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             PF SL D  SRV     +   +E+L  AGAL CFG SR           +         
Sbjct: 657  GPFTSLPDLTSRVQL---SVPQVEALATAGALGCFGMSRR----------EALWAAGAAA 703

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            T + + +      +      +      +       +    G     +P    +  L  MG
Sbjct: 704  TGRPDRLPGVGSSSH-----IPALPGMSELELAAADVWATGVSPDSYPTQFLRADLDAMG 758

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +   E   +   G+ + +A  V  +Q+  T +G  + ++   +         
Sbjct: 759  VLPAERLGSVSDGDRVLIAGAVTHRQRPATAQG--VTFINLEDETGMVNVLC 808


>gi|218674999|ref|ZP_03524668.1| DNA polymerase III protein, alpha subunit [Rhizobium etli GR56]
          Length = 821

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 203/749 (27%), Positives = 344/749 (45%), Gaps = 54/749 (7%)

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            + +  L +     +  R  +G        Q   + +  EL +I  MK++ YFL V   ++
Sbjct: 2    DAQQSLEHYVRECIPNRYPEGL------PQKVLRTVRHELALIKEMKYAPYFLTVFSIVK 55

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I +  GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +
Sbjct: 56   FARSQGI-LCQGRGSAANSAICYILGITSIDPDTNDLLFERFVSRERDEPPDIDVDFEHE 114

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR++VI+++   YG ++ A   T    +AK A+RDVG+AL +P   +  L   +      
Sbjct: 115  RREQVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLPEDVIKALSSGMW----- 169

Query: 486  PVSLQAIADDSRFREARL--ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              S      D   RE  L  +D  +   L+++++L G  RH   H  G V+    L  LV
Sbjct: 170  --SWSEELPDRNIRELNLNPSDRRLALALKLARQLMGAPRHLGQHPGGFVLTHDRLDDLV 227

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIP 602
            P+      D  + +++   +E    +K D L L  LT + K+ D + +      DL+ IP
Sbjct: 228  PIEPATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMNKAFDLIREHKDDELDLATIP 287

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
             +D  TY ++    TLG FQ+ES      L  ++P+   D++  V++ RPGPI    +  
Sbjct: 288  QEDAATYAMIRKADTLGTFQIESRAQMSMLPRLKPETFYDLVMQVAIVRPGPIQGNMVHP 347

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R+ GKEK     P ++ +L  T GV ++QE  M++A + +G++  EAD LR++M   
Sbjct: 348  YLRRREGKEKPEYPTPELEAVLGRTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATF 407

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    + + K++ +SG  KNG S   A   F  L  F  YGF +SHAA++A+I+Y + ++
Sbjct: 408  KFTGGVSRFKDKLVSGMIKNGYSPEFAEKTFGQLEGFGSYGFPESHAASFALIAYASNYV 467

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DN 833
            K H+P  F AA +  +        +   DA+   +++ P  +N    D  +        +
Sbjct: 468  KCHFPDVFCAALLNSQPMGFYAPAQIVGDAKNHGVEVRPVCINKSRWDCTLERIGTGDRH 527

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +   +  ++G+    A  I+ A  ++ F+S++D   R     +    L+ L  A A   
Sbjct: 528  AVRLGMRMVRGLAVADAARIVAARMNREFESVDDVWRR---SNVPTEALDQLAEADAF-- 582

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                    L SL   ++ A W  K   ++   +FA      +  I  ++       VR  
Sbjct: 583  --------LPSLKLQRRDAIWAIKALRDEPLPLFAAAAEREAKVIPEQQ----EPQVRLR 630

Query: 954  N---------EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                      +   +G     HP+   +  L+K  I    E++    G  +  A +V+ +
Sbjct: 631  RMTEGHNVVQDYSHVGLTLRDHPITFLRQDLQKRNIVTCSEAMNARDGRWLMAAGLVLVR 690

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q   + KG  + ++T  +         +P
Sbjct: 691  QMPGSAKG--VMFITIEDETGPANIVIWP 717


>gi|116670865|ref|YP_831798.1| DNA polymerase III subunit alpha [Arthrobacter sp. FB24]
 gi|116610974|gb|ABK03698.1| DNA polymerase III, alpha subunit [Arthrobacter sp. FB24]
          Length = 1166

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 267/1105 (24%), Positives = 478/1105 (43%), Gaps = 104/1105 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL V +++S   G    + +    AAD   A+A TD + L+  ++  +   +AG+ P
Sbjct: 2    SFTHLHVSTAFSAHYGVSWPDELAQAAAADGAKALACTDRDGLYGTVKHLKACMSAGLDP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G  L +   D    T                     GY+ L  L+S  +    GK   
Sbjct: 62   VVGVDLAVFDDDGDLRTQLAGRVVVLAHGHNDGA----GYRALCRLISDAHARTSGKAGG 117

Query: 130  RICLS-WLQEIGTEGLI------MLTG--GSSGPIDRAFFFNSSQVAEKRL-LTFKKLFG 179
             + ++    EI +  L       +LT   G    + RA                   +  
Sbjct: 118  VVPVAVTRAEIASRALHPETLEPVLTVLVGPDSDVGRAMGGRRYLRPRTLFKQWLDGMPK 177

Query: 180  DRLYVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
              +   +  H              ++++LA  H +P V TN   + +E+     DVL + 
Sbjct: 178  GTVAAEVVSHLSAPGEALSTAHAVRMLKLAAEHGVPAVLTNAVRYCAEDGAATADVLDSA 237

Query: 235  AHSTVVSQKDRPRV---TPDHYLKNRSEMVSI-----------FSDLPEALENTVEIARR 280
                 + +     +       +LK  ++M+ +            +DL   L  T  +A R
Sbjct: 238  RTLKSLPELTAEPLLQPNGRGWLKTSAQMLELGQEIIHAAGYGATDLTRLLGQTEALADR 297

Query: 281  CSFILQVH-APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
            C            P   E     I  +   EL  +  AG+  R    +   G    + R 
Sbjct: 298  CRMDPVTDMGWKRPVVPEASVIGIAGDPLVELTLRCEAGIGRRFPGIS---GKPEAEMRA 354

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL+ EL +IA + F+ YFL VA+  +      +     RGSGA S+  Y + ++ ++PL+
Sbjct: 355  RLEHELRIIANLGFASYFLTVAEVSRMILDMGVR-AAARGSGASSLVNYLIDVSQVNPLQ 413

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              L+FERFL+ DR ++PD DID     R  V R + +++G ERV  +      +A+ A+R
Sbjct: 414  HDLIFERFLSRDRATLPDIDIDVESAERHNVYRRIFDRFGAERVTLMSMQNGYRARGAVR 473

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR--------LADPSVDRL 511
            D G AL M    +  + K +    A     +A+ +    +E            +  +D L
Sbjct: 474  DAGMALGMDDGDIGEIAKQLWRFSARNFR-EALVEKPELKEFAGRVEQRDFAENQQLDLL 532

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            ++++++L+ L RH S H  G+++GD  L    P+       LP++QF+   ++  G++K 
Sbjct: 533  VDLTERLDRLPRHISMHPCGVILGDATLLDRTPVQ-PSGLGLPMSQFDKHDMDPMGMLKL 591

Query: 572  DFLGLKTLTLLQKSLDFLAQRGV---------------------------KVDLSLIPFD 604
            D LG++  + +  ++  + +                              ++DL+ +P D
Sbjct: 592  DVLGVRMQSAMAFAVREVIRLHPTKAEVVAAGAHRPGPDGTGPDYIAADGRIDLNAVPLD 651

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYN 662
            D  TY L+ +  TLG FQ+ES G R+ +  M P    D+I  +SL+RPGP+  D +  + 
Sbjct: 652  DEPTYELIRSTHTLGCFQIESPGQRELIGKMAPREFNDLIIDISLFRPGPMKSDMVRPFL 711

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              ++G    V  HP + P+L+ET GV ++ EQ+++   +++   L+ AD  RRA+G ++ 
Sbjct: 712  EHRHGFAPEVYPHPDLKPVLQETHGVTVFHEQILKTFDVMTKCGLARADEFRRALGNELL 771

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E   K +E F   A   G +  +   ++  L  F  +GF K+H AA+AV +YQ+AW+K H
Sbjct: 772  E--PKVEEFFRKEARARGYTPEVVDKVWGTLKAFGSFGFCKAHGAAFAVPTYQSAWLKAH 829

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---------GDN 833
            +P  FLA     +     K +    +AR+  I I+P  +N    +++V         G  
Sbjct: 830  HPEAFLAGLWEHDPGMYPK-RLLVAEARRLGIPILPLDINRSHAEYRVERVGSGPDRGKL 888

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I  SL  I G+     + I+   A +P+DSL D  +R    +L++  ++ L   GA D 
Sbjct: 889  GIRLSLNGIYGLSGAELKRIV---AGQPYDSLADLRAR---SRLSKPSIKRLAQLGAFDT 942

Query: 894  F------GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
                     +R  L+Q L  +Q        +      ++   +    + K  L   S+ +
Sbjct: 943  LHRESGGAANRADLVQHLQALQNRPSKKGVDVIEGQLSLPLGDVELRNLKAELPAPSMID 1002

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +      E  ++    S H +  ++P+L K+G+   ++ +    G  + +A + ++ Q  
Sbjct: 1003 N---VRAELDLMAVDVSEHLMTSHRPLLDKLGVTTADKLLGLRNGTEVLVAGVRIATQTP 1059

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
              R G R+ +++  +     ++ FF
Sbjct: 1060 PMRGGRRVVFISIDDGTGCVDSVFF 1084


>gi|331270939|ref|YP_004385650.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925]
 gi|329127331|gb|AEB77275.1| DNA polymerase III, alpha subunit [Clostridium botulinum BKT015925]
          Length = 1171

 Score =  625 bits (1612), Expect = e-176,   Method: Composition-based stats.
 Identities = 283/921 (30%), Positives = 452/921 (49%), Gaps = 74/921 (8%)

Query: 23  LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
           ++G  +   ILD+       + AITD    ++   F++       + + G +L       
Sbjct: 1   MDGMGTPKEILDRCDELNIKSYAITDHGTEYALYYFAELQEKYKTKILYGIELYEAYDHT 60

Query: 83  LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
           +      + P      ++ +     G Q L  L +      +     RI L+ L+E   +
Sbjct: 61  V------QDPNNKYFHLLTIAKNQSGIQALHRLTTMGEFEGK-YFKPRIDLNQLKEF-KD 112

Query: 143 GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVV 201
            LI+ +   +G I++A    + + A++  L +K++F D  Y+ LQ H   D+ +   +++
Sbjct: 113 DLIIGSACLAGKINKAT---TYEQAKQYALEYKEIFSDNFYLELQAHTSEDQIKANKRLM 169

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
           +L Y   +P + T++S ++ +ED E H   + V                D Y+ +  EM 
Sbjct: 170 KLHYDTNIPYIITSDSHYVKKEDKENHANFVNVNRKNADVTTTGEIYD-DCYIHSTDEMY 228

Query: 262 SIF--SDLPE-----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
            I   S+L E      L+NT +IA  C+  +Q H P+LP   E +  +  K EE      
Sbjct: 229 EIMFKSELTEDEITIGLQNTNKIADICNGTIQFHEPVLP---EVKIPNEYKSEEEYFMAL 285

Query: 315 AVAGLEVRLAQGAIAKG--YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
              G + R     I     +  QDY+QR+  E NVI +M++  Y LIVAD++QWA    I
Sbjct: 286 ITKGWKDRNMDEQIKNDLLHTEQDYKQRVLHEYNVIKQMEYISYHLIVADYMQWAVNQRI 345

Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
           P  P RGS  GS+ AY L IT+I+PL++ LLFER+LNP+R+S+PD D DF   RR+EV +
Sbjct: 346 PTAPARGSAGGSLIAYLLKITNINPLKYDLLFERYLNPERVSLPDIDSDFSSGRREEVFK 405

Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
           Y+Q  YG E VAQII F     K A++D G+ +++P   V+ + K    D     S+Q  
Sbjct: 406 YLQQTYGEEYVAQIINFSKYTPKVAIQDAGKMIKVPIKDVNVI-KEFMQDDTIDDSIQNA 464

Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
            ++ +  +   + P    +L +++  EG  +  ST+A G VI  +P+ Q   M +    +
Sbjct: 465 KNNKKLIDLLNSYPE---MLSLAKSFEGRVKTTSTNACGTVISSKPIYQYCGMKKGDNDE 521

Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
             + Q +    EK G++K D LG   L ++ + +   A        + IP DD ETY   
Sbjct: 522 QLL-QVDKVITEKLGMVKCDILGTTVLQIIDEVMKM-ADMDFYDLYTKIPLDDKETYEFF 579

Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
                 G+FQL S  M +    +QP  IEDI   +S YRPG +  I    NRK GKE IV
Sbjct: 580 KKGLYYGVFQLGSYNMTKFFMKLQPKSIEDICLGISAYRPGSMKYIDDIINRKEGKEPIV 639

Query: 673 SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             H +++P+LK T G+ +YQEQVMQ+ Q + G+S ++AD++RR M KK  + +  Q+  F
Sbjct: 640 YDHEVLEPILKPTYGICVYQEQVMQVLQAMGGFSFAQADLVRRGMAKKKAQYVLGQRNNF 699

Query: 733 ISGASK---------------------------------NGISKTIAVNIFELLAKFADY 759
           I G  +                                  GI   IA  +F+ L  FA Y
Sbjct: 700 IYGLVEFTIDGTRCTTTYELAKEYLNDIEYTVVIEGAIHKGIEIKIAKKVFDDLEDFALY 759

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           GFNKSH  AYA+++Y TA++K HYP  F+   ++   D +E I ++    +   ++++ P
Sbjct: 760 GFNKSHGLAYALLAYYTAYLKCHYPTYFMKTILSHAKDGME-IAQYLTQCKDLCVKVVHP 818

Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV------D 873
           ++N   + F V +  I Y + ++  VG  T R IM     +P+ S EDF ++       D
Sbjct: 819 NINESNLGFSVYNGSILYGIGSLYNVGEPTTRQIMN---KRPYTSFEDFINKNVNNIAED 875

Query: 874 SKKLNRRVLESLVFAGALDCF 894
             K+++  L SL+ +G  D  
Sbjct: 876 EIKIDKSALISLINSGCFDGL 896


>gi|261755958|ref|ZP_05999667.1| error-prone DNA polymerase [Brucella suis bv. 3 str. 686]
 gi|261745711|gb|EEY33637.1| error-prone DNA polymerase [Brucella suis bv. 3 str. 686]
          Length = 846

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 215/810 (26%), Positives = 360/810 (44%), Gaps = 56/810 (6%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +  +   S++S L GA     ++++  A     I I D N L   +    +        
Sbjct: 3   PYFEMAAASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQ-------- 54

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                 DI  +   ++    +  F    P +V+       Y +L  L++        K  
Sbjct: 55  ----WKDIRKESGFRLFIGCRLSFIDGTPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGE 110

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             +  + L     +  I +        D A           RL    +     +++ L  
Sbjct: 111 CHLEWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTM 160

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R  
Sbjct: 161 PHQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLL 220

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +LK   EMV +F D PEA+  T +     +F L       P           K 
Sbjct: 221 EKNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KT 276

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +  L +    G         I         +  ++ EL +IAR+++  YFL V D +  
Sbjct: 277 AQQHLYDLVWEGAARHYGADII-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTH 331

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +R
Sbjct: 332 AREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHER 390

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       
Sbjct: 391 REEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGG 450

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           +  Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+ 
Sbjct: 451 IDRQHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIG 506

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VDLSL 600
                     +++   I++ GL+K D L L  LT ++K+ D + Q   +      + L+ 
Sbjct: 507 PAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLAS 566

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
           +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 567 LPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMV 626

Query: 659 VVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             Y  R++G+E      P         +  +L +T+GV ++QEQ M+IA   + ++  EA
Sbjct: 627 HPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEA 686

Query: 711 DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
           + LRRAM   +    +   +++ I G    G  +T A N F  +  F +YGF +SHAA++
Sbjct: 687 NQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASF 746

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
           A + Y +AW+K H+P  F AA +  +    
Sbjct: 747 AHLVYISAWLKCHHPEVFAAALLNSQPMGF 776


>gi|193216861|ref|YP_002000103.1| DNA polymerase III subunit alpha [Mycoplasma arthritidis 158L3-1]
 gi|193002184|gb|ACF07399.1| DNA polymerase III subunit alpha [Mycoplasma arthritidis 158L3-1]
          Length = 999

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 315/1035 (30%), Positives = 509/1035 (49%), Gaps = 92/1035 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +++ ++S YS L+  + L+N+++    +    +AIT+  N FS   F +K  A  ++ I 
Sbjct: 4    INIHLNSIYSFLQSTIQLDNLIENALKNNVEYLAITERGNFFSFAPFYEKCQAHKLKSIF 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  +DI++Q                   +L      G   L EL +  Y +   K     
Sbjct: 64   GLDVDIEIQ-------------GKPYRFILHAKNNTG---LFELFNLSYDILSNK----- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L ++     I+                  +  ++ L        D  Y++L  H  
Sbjct: 103  -KLYLDDVANNKNIIFI--------EHVLDGYYKKTKQVLD------YDNHYISLGLHEV 147

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             +             +   ++ ++++  +  +D     +L  +    + S      +   
Sbjct: 148  SENAVFIN------ENLHKILISHHNAIMDFDDNSLIKILALMNEDAINSNATFDILEFG 201

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
              +    E         + +  T E+ + C F L  +  ILP+F     +++  +    L
Sbjct: 202  FAVATDLE--------KKLITKTNELMQGCYFELPKNDYILPKFQ----NELNLDSTKYL 249

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            +      +  R       K     +Y+ RL  E+++I ++KF  YFLI+ D++ WAKKN 
Sbjct: 250  QTLIKNNIVKRF-----EKSAWNDEYKLRLLHEMSIIEKLKFEDYFLIIQDWVNWAKKNK 304

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I +GPGRGS AGS+ +Y L IT++DPL++ L+FERFLNP+R+SMPD DID   +RR EVI
Sbjct: 305  IAIGPGRGSAAGSLVSYILGITNVDPLKYGLIFERFLNPERVSMPDIDIDVQDNRRQEVI 364

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             Y+  KYG  +VA I+TF SL  K+A+RDV R   +  + ++ + KLI         L+ 
Sbjct: 365  EYLNKKYGSSQVANIVTFASLGKKSAIRDVMRTYDVSPAMINEVSKLIGLKEGS--LLEE 422

Query: 492  IADDSRFREARLADPSVD-----RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               + +F  A  +    D     ++L  + +LEG YR   THAAG++I  +P++Q++P Y
Sbjct: 423  YQSNKKFALALNSLNKEDANFSTKILNYASQLEGFYRQTGTHAAGVIIAPKPINQIIPTY 482

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            + +   +  TQ +M+++E  GL+K D LGLKTLT +Q+ L  + + + + +DL+ I ++D
Sbjct: 483  K-IEDGIQQTQVSMEYLEHFGLLKMDILGLKTLTTIQEVLLQIKKTKNLDLDLAKIKYED 541

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T+ LL T  T+GIFQLES GM +AL+ +  D   DI+A +SLYRPGP+DN+ VY  RK
Sbjct: 542  QLTFDLLNTGSTVGIFQLESFGMTKALKQIHVDSFNDIVATISLYRPGPMDNLKVYAKRK 601

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I SI    D ++K T G+IIYQEQ+MQI Q ++  S S+AD +RR + KK  +EM
Sbjct: 602  NAHEPIPSISKAYDEIVKGTYGIIIYQEQIMQIVQAVANLSFSQADNIRRIISKKKVDEM 661

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
               K  F++ A KNG S+  A+NIFEL++KFADYGFNKSHA +YA+ISYQ A++K HYP+
Sbjct: 662  HAVKTNFVNSAIKNGYSEKDALNIFELISKFADYGFNKSHAVSYAMISYQMAYLKAHYPL 721

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF +A ++      E I +F  +A+   I+I+ P +N    +  + +  I   L  IKG+
Sbjct: 722  EFYSAIISSAHGAHETIARFSAEAKSLGIEIISPDINLSNQNATILNKAIVLPLNMIKGI 781

Query: 846  GTTTARHIMEASA-DKPFDS-LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            G  T R I+E    + P+ + L  F   +  K      LE L+ A AL  F  ++  +L 
Sbjct: 782  GPETVRLILEDRKINGPYRNFLHLFVCLMHIKNFGLANLEILIKANALRTFNINQATMLN 841

Query: 904  SLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG- 960
             +       + + K +   + +   F  E   +S     E F V N     +NE   LG 
Sbjct: 842  EIAKENSDIRLLFKIKKTDNSSPKDFLEEINNYSPS---EHFKV-NPKEEAQNEAYYLGQ 897

Query: 961  ---FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
               F      +  Y+    ++             G    +       ++K +        
Sbjct: 898  VYNFNL----VKKYELEGNRLANIHL--------GTEHIIYVYCSDVKRKISTNDKEYYV 945

Query: 1018 VTFSEPAKEYEANFF 1032
            V   + + +     F
Sbjct: 946  VVLEDSSMQLILRIF 960


>gi|308177546|ref|YP_003916952.1| putative DNA polymerase III subunit alpha [Arthrobacter arilaitensis
            Re117]
 gi|307745009|emb|CBT75981.1| putative DNA polymerase III subunit alpha [Arthrobacter arilaitensis
            Re117]
          Length = 1151

 Score =  623 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 268/1094 (24%), Positives = 461/1094 (42%), Gaps = 109/1094 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL V SSYS   G      +     A     +A+TD + L+  ++      A G+ P
Sbjct: 2    SFTHLNVSSSYSAHYGVSHPKQLAQAAKAQGAQMLALTDRDGLYGTVKHVAACMAEGLDP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS---TAEGYQRLIELVSRMYLLDQGK 126
            I+G  L +             T   T   I+LL        GY  L   ++  +    G 
Sbjct: 62   ILGVNLAVL-----------DTHGDTHGRIILLARGRCNGAGYAALCRAITLAHSTAHG- 109

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                + +  L  +   G ++L  G    + RA    S   A   L  +KK  G  L V +
Sbjct: 110  -VPGLRIEQLAHLAAAGNLVLLLGGESDVARAILKGSYTQARALLAGWKKRLGKMLRVEI 168

Query: 187  QRHRGYDRYRE-----SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
              +      R      +++++ A+   +  V TN   ++  +     D+L +      + 
Sbjct: 169  ATYLSSPGSRYSLGEAARLLRYAHERGIKAVLTNAVRYVDPDGAVTADILDSARALHSLK 228

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEA---------LENTVEIARRCSFILQVHAPIL 292
              D  +     +LK   +M  +  ++ +A         L  T  +A   +          
Sbjct: 229  NLDSCQPNGQGWLKTPQQMRQLAKEIGQATEKSWAHQLLRETEALAEWAAVDPVADLGWK 288

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA--KGYHAQDYRQRLDFELNVIAR 350
               I  E   I       LR  A+  L  R+                 +RL  EL VI R
Sbjct: 289  KPVI-PEAKVIG------LRRPAMQELTERVHGAVPGLLGAEKRSVVEKRLALELGVIDR 341

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            + F+GYFL VA+ ++      I V   RGSGA S+  Y L I+ ++PL   L+FERFL+ 
Sbjct: 342  LDFAGYFLTVAETVKLITGMGIRVA-ARGSGASSLVNYLLGISQVNPLAHDLVFERFLSD 400

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
             R ++PD DID    RR E+ R + + +G ERV+ +    + +A+ A+RD G AL +   
Sbjct: 401  TRTTLPDIDIDVESARRHEIYREIFSSFGEERVSLMSMQNAYRARGAVRDAGAALGVEQE 460

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSR---FREARLADPSVDRLLEISQKLEGLYRHAST 527
            QVD + K +    A     +A+++        E    D  +D L++ +++L+ L RH S 
Sbjct: 461  QVDEIAKQLWRFSASSFR-EALSEKPELAALAERITDDTQLDILIDATERLDRLPRHISM 519

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            H  G+++ D  L    P+       L ++QF+   ++  GLIK D LG++  + +  +L+
Sbjct: 520  HPCGVILSDASLLDRTPVQ-PSGIGLQMSQFDKHDMDLMGLIKLDVLGVRMQSAIAYTLE 578

Query: 588  FLAQRGVK---------------------VDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
             +A+                         +DL+ +P DD  T+ L+ +  TLG FQ+ES 
Sbjct: 579  EIARMHPDKRSAARAGGHVDDSYISATGVIDLARVPLDDEPTFELIRSTHTLGCFQIESP 638

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKE 684
            G R+ +  + P    D+I  +SL+RPGP+ + +   Y   ++G      +HP + P L E
Sbjct: 639  GQRELVGKLAPREFNDLIIDISLFRPGPMQSNMVKPYLEHRHGFAPAQYLHPDLIPALAE 698

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T GV ++ EQV++I  +L+G  L  ADV RR +G    E+    +    + A+K G ++ 
Sbjct: 699  THGVTVFHEQVLRILHVLTGCGLGMADVYRRLLG--DPEKEPAVERYVRTEAAKRGYAQE 756

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
                ++E+L+ F  +GF K+H AA+AV +Y +AW+K H+P  FLA     +     K + 
Sbjct: 757  TIDKVWEVLSGFGSFGFCKAHGAAFAVPTYHSAWLKAHHPEAFLAGIWEHDPGMYPK-RL 815

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKV-----------------------GDNRIYYSLAA 841
               +AR+  + I+P  +N     ++V                       G   I  +   
Sbjct: 816  LVSEARRMGVPILPLDINRSTGHYRVERIFEHAPAAVPAVPRAVGSQRPGRYGIRLAFRD 875

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF--GYSRM 899
            I  +     + ++   A +P++ L D  +R     L+RR  ++L   G  D    G SR 
Sbjct: 876  IHQMSEREVQRLV---AGQPYEHLADVRARA---GLSRRTYQNLAALGVFDSLLTGTSRA 929

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENI-FAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              +    ++   +   +         +     +        L+   +        NE  +
Sbjct: 930  DTIAHTQSMSHSSLPAKYRPGPGQLALDLGRIEHIAETGKQLDPADI------VRNELDL 983

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +    S H +  Y+  L  + I    E +    G  + +A + V+ Q    R G R+ ++
Sbjct: 984  MHLDASEHLITSYRQRLAHLTITQAAELLHLRNGTEVLVAGVRVATQTPPMRGGKRVVFI 1043

Query: 1019 TFSEPAKEYEANFF 1032
            +  + +   +A FF
Sbjct: 1044 SVDDGSGCIDATFF 1057


>gi|260567285|ref|ZP_05837755.1| error-prone DNA polymerase [Brucella suis bv. 4 str. 40]
 gi|260156803|gb|EEW91883.1| error-prone DNA polymerase [Brucella suis bv. 4 str. 40]
          Length = 846

 Score =  623 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 214/810 (26%), Positives = 359/810 (44%), Gaps = 56/810 (6%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +  +   S++S L GA     ++++  A     I I D N L   +    +        
Sbjct: 3   PYFEMAAASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQ-------- 54

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                 DI  +   ++    +  F    P +V+       Y +L  L++        K  
Sbjct: 55  ----WKDIRKESGFRLFIGCRLSFIDGTPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGE 110

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             +  + L     +  I +        D A           RL    +     +++ L  
Sbjct: 111 CHLEWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTM 160

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R  
Sbjct: 161 PHQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLL 220

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +LK   EMV +F D PEA+  T +     +F L       P           K 
Sbjct: 221 EKNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KT 276

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +  L +    G         I         +  ++ EL +IAR+++  YFL V D +  
Sbjct: 277 AQQHLYDLVWEGAARHYGADII-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTH 331

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +R
Sbjct: 332 AREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHER 390

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EV++YV ++Y  +R A + T  S ++++ +RDVG+AL +       L   +       
Sbjct: 391 REEVMQYVYDRYSRDRAAIVATVISYRSRSVIRDVGKALGLSEDVTAALANTVWGLSGGG 450

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           +  Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+ 
Sbjct: 451 IDRQHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIG 506

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VDLSL 600
                     +++   I++ GL+K D L L  LT ++K+ D + Q   +      + L+ 
Sbjct: 507 PAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLAS 566

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
           +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  D +
Sbjct: 567 LPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMV 626

Query: 659 VVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             Y  R++G+E      P         +  +L +T+GV ++QEQ M+IA   + ++  EA
Sbjct: 627 HPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEA 686

Query: 711 DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
           + LRRAM   +    +   +++ I G    G  +T A N F  +  F +YGF +SHAA++
Sbjct: 687 NQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASF 746

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
           A + Y +AW+K H+P  F AA +  +    
Sbjct: 747 AHLVYISAWLKCHHPEVFAAALLNSQPMGF 776


>gi|225389825|ref|ZP_03759549.1| hypothetical protein CLOSTASPAR_03573 [Clostridium asparagiforme
           DSM 15981]
 gi|225044110|gb|EEG54356.1| hypothetical protein CLOSTASPAR_03573 [Clostridium asparagiforme
           DSM 15981]
          Length = 592

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 218/608 (35%), Positives = 342/608 (56%), Gaps = 21/608 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +F HL VH+ YSLL+G+  +  ++ +       ++A+TD   ++  ++F + A   GI+P
Sbjct: 2   AFTHLHVHTEYSLLDGSCKIRELVARAKELGMDSMAVTDHGVMYGVIDFYKAAREVGIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I+GC++ +         N           +VLL    +GYQ L+++VS+ ++ D      
Sbjct: 62  ILGCEVYVAPGSRFDRENVNGE--DRYYHLVLLAENDQGYQNLMKIVSKGFV-DGFYYKP 118

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
           R+    L+    EG+I L+   +G + R       + A +  L ++  F     ++ LQ 
Sbjct: 119 RVDYELLETYH-EGIIALSACLAGEVQRYLSRGMYEEAGRAALRYQDTFGKGNFFLELQD 177

Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H    +      +++L+    + LVATN+  +   ED +AHD+L+ +     V+ ++R R
Sbjct: 178 HGLDAQKQVNQGLLRLSRDLGIDLVATNDVHYTYAEDEKAHDILLCIQTGKKVADENRMR 237

Query: 248 VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +Y K+  EM ++F    EA+ENT +IA+RC+  ++     LPRF   E  D    
Sbjct: 238 YEGGQYYCKSEEEMRALFPYALEAIENTHKIAQRCNVEIEFGVLKLPRFEVPEGFD---- 293

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               L +  + G      +            R+RLD+EL+VI  M +  YFLIV DFI +
Sbjct: 294 SWTYLNHLCMQGFNRHYPEDDGT-------LRERLDYELDVIRTMGYVDYFLIVWDFINY 346

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A+   I VGPGRGS AGS+ +Y+L IT+IDP+R++LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347 ARSKGISVGPGRGSAAGSIVSYSLGITNIDPIRYNLLFERFLNPERVSMPDIDVDFCYER 406

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R EVI YV  KYG ++V QI+TFG+L AK  +RDVGR L +PY+  D + K+IPND    
Sbjct: 407 RQEVIDYVVEKYGKDQVVQIVTFGTLAAKGVVRDVGRVLDLPYALCDSIAKMIPNDLGMT 466

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           +  +A+  +   ++A   D +V  L+++S++LEGL RH S HAAG+VIG R + + VP+ 
Sbjct: 467 LD-KALVMNPDLKKAYNEDETVHNLIDMSKRLEGLPRHTSMHAAGVVIGSRSIDEFVPLS 525

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
           R        TQF M  IE+ GL+K DFLGL+TLT++Q +++       V +DL  I ++D
Sbjct: 526 RAA-DGTITTQFTMTTIEELGLLKMDFLGLRTLTVIQNAVNMAQKNHHVSIDLDNIDYND 584

Query: 606 HETYHLLT 613
            +    + 
Sbjct: 585 KKVLDSIG 592


>gi|99034688|ref|ZP_01314628.1| hypothetical protein Wendoof_01000559 [Wolbachia endosymbiont of
            Drosophila willistoni TSC#14030-0811.24]
          Length = 718

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 291/607 (47%), Positives = 406/607 (66%), Gaps = 15/607 (2%)

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD VI YVQ KYG   VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +P
Sbjct: 1    RDLVIDYVQKKYG--YVAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNP 58

Query: 487  VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+L QAI  D   ++ R +D  + +LL+IS +LEG+YRH STHAAGIVI D+ L   VP+
Sbjct: 59   VTLSQAIEFDQNLQKERDSDEVIAKLLDISLRLEGIYRHVSTHAAGIVICDQKLENFVPV 118

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            Y D  S LP+TQ++MK++EKAGLIKFDFLGL TLTL+      + + G K+D+S +P +D
Sbjct: 119  YYDPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDGKKIDISSVPLND 178

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +TY +L++  ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  RK
Sbjct: 179  QKTYEILSSGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARK 238

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G EK   IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEM
Sbjct: 239  HGLEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEM 298

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +KQ+E FI GA+KNG+    A  IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+
Sbjct: 299  NKQRELFIQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPL 358

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF  A M L +D+ +K+  F   A+   + ++ P +N    +F + D RI Y +AA++ V
Sbjct: 359  EFFTALMNLNIDDRDKLNLFYHAAKFSGVTVLSPDINKSQAEFSIEDERIRYGIAALRNV 418

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G + A  I+   +      + +F        +N+R LESL+ +GA D    +R QL +S+
Sbjct: 419  GFSIAEGIVNVRSSAC-KDIWEFIQ-NSGHIINKRALESLIKSGAFDSVHKNRKQLYESM 476

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D +  +A   +++R +    +F         K  LE     +   + E+E   LGFY + 
Sbjct: 477  DTLIYFANKNKQDRESSQAALFGSLDVL---KPKLENVEDFDEEEKLEHELFSLGFYLTN 533

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HPL+ ++ +L K+ I    E          + A ++++ + + + +G R   +T S+P  
Sbjct: 534  HPLEKFRTLLEKLNIGFIGE------NRTAKTAGVILNARMRTSERG-RFVILTLSDPHN 586

Query: 1026 EYEANFF 1032
              E  F+
Sbjct: 587  ISEIAFY 593


>gi|258652927|ref|YP_003202083.1| DNA polymerase III subunit alpha [Nakamurella multipartita DSM 44233]
 gi|258556152|gb|ACV79094.1| DNA polymerase III, alpha subunit [Nakamurella multipartita DSM
            44233]
          Length = 1422

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 301/1102 (27%), Positives = 483/1102 (43%), Gaps = 129/1102 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH  +S  +G    +++++      QPA+A+TD  ++  A  F Q A  AGI+PI
Sbjct: 8    FVHLHVHGEHSHQDGISRADDLVEAAVRHGQPALALTDHGSIGGAWRFGQAAAQAGIKPI 67

Query: 71   IGCQLDIDMQDNLKMTNQG-------------------KTPFPTVPSIVLLVSTAEGYQR 111
            IG +  + + D     ++                         T   + +L +T EG+  
Sbjct: 68   IGVEAYLAIGDRALRGSRPVPRDLLGADGGGAGADAEVGFKKQTYEHLTVLAATGEGFGN 127

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------- 160
            L  L +            R+  + L    + GLI LTG  SGP+  A             
Sbjct: 128  LSRLTADASR--HVYHRPRMDYTSLA-AHSAGLIGLTGCVSGPVAGALLRDGTRQPDGTV 184

Query: 161  FNSSQVAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSL 218
            F+    A++ ++T + +F  DRL+V +  H    +R    Q+  LA    L  + TN+S 
Sbjct: 185  FDGRAAAKQAIITLRDIFGRDRLFVEVMDHGIAAERRVTEQLFDLARRAGLKTLFTNDSH 244

Query: 219  FLSEEDYEAHDVLMAVAHSTVVS---------QKDRPRVTP-DHYLKNRSEMVSIF---S 265
            + + +D   HD+ + +  +T              +R R T   ++L++ +EM ++     
Sbjct: 245  YTNADDAPLHDLWLCIGETTRQGAGKPPFKITDTNRWRFTGTGYHLRSTAEMYALAGGDD 304

Query: 266  DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
                AL NT+ +A       +V      R    +           LR+    G   R   
Sbjct: 305  RAVRALRNTLLVADMIED--RVLPESRIRLPRYDRLGAFTCAAELLRSLVDDGAGERWGA 362

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
               A      D   R+D EL VI ++ F  YFLIV + +  A+      GPGRGS AGS 
Sbjct: 363  DWRA---ARPDVANRIDHELAVINQLGFVDYFLIVREALYAARGAGYRTGPGRGSAAGSA 419

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             +YAL I D+DPL   LLFERFL+P R  MPD D D  +  +  V RY+  ++G +RVA+
Sbjct: 420  VSYALRIVDVDPLANGLLFERFLDPTRAEMPDIDSDLDRAGQQWVFRYLSERWGADRVAR 479

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQV---DRLCKLIPNDPAHPVSLQ--AIADDSRFRE 500
            I   G  +A+A++RD  RA+   ++ +   ++L   +P        L      D    R 
Sbjct: 480  IGAPGYTRARASIRDAARAIVPGHAAIQVGNQLAAKVPPTAPTLAGLIDPTNPDGEALRA 539

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD---LPVTQ 557
            A   DP    +L+ +  +EGL + A  HA G+V+   PL  LVP+ +    D   + VT 
Sbjct: 540  AVPTDPDHQAVLDSAVGIEGLVKQAGVHACGVVVSSEPLPPLVPLRQVTADDGQPIWVTD 599

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----RGVKVDLSLIPFDD--HETYHL 611
            +++  +   GL+K DFLGL+TL ++  ++  +            L+  P D      + +
Sbjct: 600  WDVHDLADLGLVKIDFLGLRTLDVIDAAVAQIRASTGTDIDPEHLADEPGDPRAEAVWTM 659

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T G+FQLES+ M    E  +P  I+D+ A+++L+RPGPI       +  R+ G +
Sbjct: 660  LGAGRTSGVFQLESASMAGLCERARPRSIDDLSAILALWRPGPISAGFPDLFAARQTGAD 719

Query: 670  KIVSIHPLIDP--------MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             +       DP        +L  TQG+I+YQEQ+MQI  L++G+  +    LR+A+ KK 
Sbjct: 720  TVDYSIFTTDPAEERALRTVLDTTQGLIVYQEQIMQIGALVAGFGPTLTSKLRKAVSKKD 779

Query: 722  KEEMDKQKERF---------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
               M +  ERF           GA+K   +++ A  ++  +     Y FNKSH+ AYA +
Sbjct: 780  AAAMTEIGERFLVGAARDVTDDGAAKQPFARSTARALWAGIKGAGAYSFNKSHSRAYAEL 839

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            ++QTAW+K  Y  +F AA +    D+ +K      D R   + ++ PSVN          
Sbjct: 840  TWQTAWLKASYLPQFAAALL-ACTDSADKRAAALMDLRSEQVTVLGPSVNHGADVTSCDR 898

Query: 833  NR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---------DSKKLNRRVL 882
            +  +   L+ I GVG+  A  + E +    +  L +   RV         D++ L+   L
Sbjct: 899  HGVVRLGLSEIAGVGSAGAAIVRERTHGGDYTDLHNLYRRVRVPDAAGSGDTRPLSASTL 958

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
             +LV +GALD FG  RM L   + ++                           D + +  
Sbjct: 959  LALVESGALDQFGP-RMGLAALIGSV------------------------KSPDPVPVPD 993

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE------ESVATIRGNNIR 996
                 +  R   E+RVLG   S +PL   K  +       ++        V    G +I 
Sbjct: 994  M-EWPTLERSIRERRVLGTALSSNPLRAAKETVHAWRTPDFQRRPTPVHKVPAADGADIL 1052

Query: 997  LAAMVVSKQQKKTRKGSRIGWV 1018
               ++ S   + +    R G V
Sbjct: 1053 TLGVLASIDVRISAGRERAGIV 1074


>gi|86158037|ref|YP_464822.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-C]
 gi|123497627|sp|Q2IIA8|DNAE2_ANADE RecName: Full=Error-prone DNA polymerase
 gi|85774548|gb|ABC81385.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-C]
          Length = 1132

 Score =  622 bits (1604), Expect = e-175,   Method: Composition-based stats.
 Identities = 214/748 (28%), Positives = 348/748 (46%), Gaps = 54/748 (7%)

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     G   R        G   +D  ++L  EL+++  + ++ YFL V D +++A+  
Sbjct: 361  LRELVREGARWRYG------GEPPEDVARQLARELDLVESLGYASYFLTVWDVVRFARSR 414

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I +  GRGS A S   Y L IT IDP+R  LLFERF++ +R   PD D+DF  +RR+EV
Sbjct: 415  GI-LCQGRGSAANSAVCYVLGITSIDPVRMGLLFERFISAERGEPPDIDVDFEHERREEV 473

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            ++YV  +YG +R   +    + + K+ALRDVG+AL +   QVDRL KL+ +         
Sbjct: 474  LQYVYQRYGRDRAGMVCEVITYRGKSALRDVGKALGLSLGQVDRLAKLVGSYEDLGQVGP 533

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
             +   +    A      V   L ++++L+G  RH S H  G VI  RPL + VP+     
Sbjct: 534  ELLAQAGLDAA--DSERVRMTLALARELQGFPRHLSIHVGGFVITRRPLCETVPIEPAAM 591

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV----------KVDLSL 600
                + Q++   + +  L+K D LGL  LT L ++L  LA+                L+ 
Sbjct: 592  PGRTIVQWDKDDLAELDLLKVDLLGLGMLTALSRALALLARHRPAPASPTPVPHPDALAT 651

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NI 658
            IP +D E Y +L    ++G+FQ+ES         ++P    D++  V++ RPGPI    I
Sbjct: 652  IPAEDPEVYEMLGRADSIGVFQVESRAQMSLAPRLRPRNFYDLVISVAIIRPGPIQGGMI 711

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R++GKE++   +  ++P+L  T GV ++QEQ M++A + +G++  EAD LRR M 
Sbjct: 712  HPYLRRRDGKEQVRYPYAPLEPVLARTLGVPLFQEQAMRLAVIAAGFTPGEADELRRVMT 771

Query: 719  KKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             +   E++   K R ++G ++ GIS   A  IF+ L  FA YGF +SHAA++A++ Y +A
Sbjct: 772  HRRSHEKLAAMKARLVAGMAERGISGADAEEIFKQLLGFAGYGFPESHAASFALLVYASA 831

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-- 835
            W+K ++P  F  A +  +           +DA++  +++    V     +  +       
Sbjct: 832  WLKRYHPAAFACALLNSQPMGFYAPHTLVEDAKRHGVEVRGVDVGCSGWESSLEGAAPGR 891

Query: 836  ----------YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                         L AI+G+       I+EA A  PF S+ +   R      +R  L  L
Sbjct: 892  PAAPGEAAVLRVGLHAIRGLPRAVGEAILEARAAGPFGSVAELVRRARL---SRAWLVRL 948

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGAL      R             A W          ++FA        +  L + S 
Sbjct: 949  AEAGALGTLAPDRRG-----------AVWRSLAVEADGGDLFAGLAPP-EPEAALPEASA 996

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +       +    G    GHP+ + +P L    I+   E         + +A +V+ +Q
Sbjct: 997  ADE---VSADFTTTGLSVRGHPMALVRPGLGGDRIRTARELGRLPDRAPVEVAGLVIVRQ 1053

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +T +G  I +V+  +          P
Sbjct: 1054 RPETARG--IVFVSLEDETGIANLVVMP 1079



 Score =  202 bits (513), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 106/302 (35%), Gaps = 35/302 (11%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +  +P +  L+  S +S LEGA     ++ + A      +A+ D N L+  +    +A  
Sbjct: 1   MSHAPRYAELRCKSCFSFLEGASHPEELVGRAAELGLSGLALADVNGLYGIVRAHAEAKR 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            G+  I+G +L +                     +VLL    EGY  L  LV+R +    
Sbjct: 61  QGLPLIVGAELVVA-----------GLAPGRPARLVLLAQDREGYAGLCRLVTRAHCGEG 109

Query: 124 QGKQSVRICLSWLQ------EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
                 R     +         G  GL  L  G+ G                 +   K  
Sbjct: 110 WTGAPPRRERDAVAVPFEAVAAGARGLFALYPGADGD---------------AVARLKDA 154

Query: 178 FGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
           FG R  + + RHR   +  R            +P+  TN+    +       DVL  V H
Sbjct: 155 FGRRAALAVARHRVAGEEARVLAARSAGRRLGVPVAVTNDVHTHARARQVLQDVLTCVRH 214

Query: 237 STVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
            T V +  R      +  LK   E+  ++SD PE L    +IA +C F ++      P  
Sbjct: 215 GTTVDRAGRRLFPNAERTLKGPEELARLWSDFPEGLAAAADIADQCRFRMEEIRGEHPLP 274

Query: 296 IE 297
             
Sbjct: 275 PV 276


>gi|85373905|ref|YP_457967.1| DNA polymerase III alpha chain [Erythrobacter litoralis HTCC2594]
 gi|84786988|gb|ABC63170.1| DNA polymerase III alpha chain [Erythrobacter litoralis HTCC2594]
          Length = 1262

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 228/887 (25%), Positives = 392/887 (44%), Gaps = 89/887 (10%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FV L + S +S L GA    +++    +    AI I D N++   +    +A    ++P
Sbjct: 27  PFVELGLVSCFSFLRGASDAVDLVLSARSAGYDAIGIADVNSMAGVVRIHTEAQTLKLRP 86

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-----Q 124
           +IG                 +       + +        Y R+  L+S   +       Q
Sbjct: 87  VIGT----------------RIETVEGLAFLAYPRDRAAYGRVCRLISAGRMATLEGEWQ 130

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSS---------------------GPIDRAFFFNS 163
            K    I L+ L E   E  ++L                           P  R     +
Sbjct: 131 AKGECDISLAMLAEHSEEVQLILLPPDDLAQRFTIKIESNIIPFRHPGLDPGSRFSSRTA 190

Query: 164 SQVAEKRLLT-------FKKLFGD------------RLYVNLQRHRGYDRYRESQVVQLA 204
            + A  RL          + +F D            R       +RG D  R  ++  LA
Sbjct: 191 PEEAGPRLGDRGDEKVVIEAVFPDILPHLTRQLPTLRHLAASYLYRGDDIARIDRLDTLA 250

Query: 205 YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSI 263
             + L L+ATNN  + + E     DV+ A+ H T V++         + YLK    MV +
Sbjct: 251 KANNLTLLATNNVHYHAPERRPLQDVMTAIRHKTTVARAGHLLHGNAERYLKPPETMVHL 310

Query: 264 FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
           F+  P A+    E+A  C+F L+      P+ I  +        +  L  +   G + R 
Sbjct: 311 FARWPHAIAAAREVADACNFSLEELKYEYPQEIYPDGM----TPQQFLEKETWKGTQWRY 366

Query: 324 AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV-GPGRGSGA 382
             G           R+ L  EL +IA++  + YFL + D + +A+  + P+   GRGS A
Sbjct: 367 PNGL------PDSVRETLQRELALIAKLDLARYFLTIKDIVDYARSVDPPILCQGRGSAA 420

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            S   + L IT +DP +  LLF+RF++ +R   PD D+DF  +RR+EVI+++  KYG  R
Sbjct: 421 NSAVCFVLGITSVDPAKHQLLFDRFISEERKEPPDIDVDFEHERREEVIQHIYRKYGRHR 480

Query: 443 VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
                T    + + A+R+VG+A+ +       L + +       +    +A+        
Sbjct: 481 AGLTATVIHYRPRMAIREVGKAMGLSEDVTSALARTVWGGWGKEIGEGHVAETG----MD 536

Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
           +ADP + R+L +++++ G+ RH S H  G ++ +  L++ VP+      D    +++   
Sbjct: 537 VADPQLRRVLTLTRQMIGMPRHLSQHVGGFILTEGALTETVPIGNGAMPDRSFIEWDKDD 596

Query: 563 IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIF 621
           IE  G++K D L L  LT ++K LD L     +  +L+ +P +D ETY +L    +LG+F
Sbjct: 597 IEALGILKVDVLALGMLTCIKKCLDLLENHHERPLELATVPREDPETYAMLRKGDSLGVF 656

Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSI----- 674
           Q+ES      L  ++P    D++  V++ RPGPI  D +  Y  R+ G+EK+V       
Sbjct: 657 QVESRAQMNMLPRLRPREFYDLVIQVAIVRPGPIQGDMVHPYLKRRRGEEKVVIPAPSPE 716

Query: 675 H---PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKE 730
           H     +  +L+ T GV I+QEQ M+IA   + +S  EA+ LR+AM   + +  +D+ ++
Sbjct: 717 HGAPDELSSILERTLGVPIFQEQAMKIALDAARFSSIEANRLRKAMATFRSRGMVDELQD 776

Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             +      G  +  A   F  +  F +YGF +SHAA++A + Y ++W+K H+P  F  A
Sbjct: 777 MMVERMVTRGYDREFAERCFNQIRGFGEYGFPESHAASFAHLVYVSSWLKCHFPAAFACA 836

Query: 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            +  +        +  +DA +  ++++P  VN    D  +      +
Sbjct: 837 LLNSQPMGFYAPAQIVRDAAEHGVEVLPADVNCSQWDCTLEVLAEDF 883



 Score =  134 bits (337), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 62/204 (30%), Gaps = 17/204 (8%)

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               +   L  + G+    A  ++     + PF  +     R     +    +E L  A  
Sbjct: 955  HIALRLGLRQVDGLPEHVAAQMLAERDVNGPFTDVRALRDRA---GIGPAHVERLASADC 1011

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSVENSS 949
                G  R Q L    ++                 +F A  +     +           S
Sbjct: 1012 FTSMGLPRRQALWDARSLV----------AGPDLPLFRAAAERDEGAERKPTMLPAMPLS 1061

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 + +        HP+   +P L + G     +       + +++A +V+ +Q+  +
Sbjct: 1062 EEVVADYQTTRLSLKAHPMAFLRPELAERGFVRACDLRDRKFRSMVQVAGVVLIRQRPGS 1121

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
             KG  + ++T  +         +P
Sbjct: 1122 AKG--VCFITLEDETGVINLVVWP 1143


>gi|324014098|gb|EGB83317.1| DNA polymerase III, alpha subunit [Escherichia coli MS 60-1]
          Length = 564

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 234/576 (40%), Positives = 342/576 (59%), Gaps = 22/576 (3%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR 559


>gi|331014284|gb|EGH94340.1| error-prone DNA polymerase [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 721

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 219/763 (28%), Positives = 357/763 (46%), Gaps = 54/763 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L   S++S   GA S   + D+       A+AITD   L   +   Q +   G+  I
Sbjct: 5   YAELHCLSNFSFQRGASSARELFDRALRHGYAALAITDECTLAGIVRAWQASKDTGLPLI 64

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G ++ ++                  P IVLLV    GYQ L  L++      + K   R
Sbjct: 65  VGSEMHLENG----------------PKIVLLVENLTGYQALCTLITVARRRAK-KGEYR 107

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           + L     +    L +      G         +           ++ F +RL++ ++ HR
Sbjct: 108 LLLEDFDHLPGGLLAIWLADIEGDAQACLAQGN---------WLRERFAERLWLGVELHR 158

Query: 191 G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
           G  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V++       
Sbjct: 159 GADDEQRLADLLALAQSLAIPAVASGDVHMHARGRRALQDTITAIRHHTTVAEAGHLLFA 218

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             + +L++   +   + D    L  ++ IARRC+F         P  +  +     +   
Sbjct: 219 NGERHLRSLDALAEHYPDW--LLAESLRIARRCTFTFDQLQYEYPHELVPKG----QTST 272

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
           + LR     G+  R  +G           R +++ EL +I   KF  YFL V D +++A+
Sbjct: 273 SWLRELTERGIRRRWPRGLSVAA------RAQVEKELALITEKKFDSYFLTVHDIVEFAR 326

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  DRR+
Sbjct: 327 SQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERDEPPDIDVDFEHDRRE 385

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
           EVI+Y+  +YG  R A      +     ALRDV + L +P  Q++ L             
Sbjct: 386 EVIQYIFRRYGRGRAALTAVASTYHGSGALRDVAKVLGLPPDQINALADAFSRWS----- 440

Query: 489 LQAIADDSRFRE--ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             A+    R RE       P + R+L ++ +L G  RH S H  G VI + PL  LVP+ 
Sbjct: 441 -DALPSAERLREYGFDAETPILKRVLTLTGELIGFPRHLSQHPGGFVISEHPLDTLVPVE 499

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
               ++  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P DD
Sbjct: 500 NAAMAERTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKQWTLASLPGDD 559

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNN 663
             TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  Y  
Sbjct: 560 RPTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLR 619

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
           R+N +E I    P +  + + T GV ++QEQVM++A + + Y+  EAD LRRAM   K  
Sbjct: 620 RRNKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADQLRRAMAAWKRH 678

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
             +D  +ER  +G   NG     A  IFE +  F  YGF +SH
Sbjct: 679 GGLDPHRERLRTGMLANGYEADFADRIFEQIKGFGSYGFPESH 721


>gi|300932138|ref|ZP_07147423.1| DNA polymerase III, alpha subunit [Escherichia coli MS 187-1]
 gi|300460114|gb|EFK23607.1| DNA polymerase III, alpha subunit [Escherichia coli MS 187-1]
          Length = 566

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 232/576 (40%), Positives = 341/576 (59%), Gaps = 22/576 (3%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            GLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 AGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR 559


>gi|324017809|gb|EGB87028.1| DNA polymerase III, alpha subunit [Escherichia coli MS 117-3]
          Length = 560

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 233/576 (40%), Positives = 342/576 (59%), Gaps = 22/576 (3%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR 559


>gi|306842636|ref|ZP_07475284.1| error-prone DNA polymerase [Brucella sp. BO2]
 gi|306287228|gb|EFM58719.1| error-prone DNA polymerase [Brucella sp. BO2]
          Length = 830

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 191/754 (25%), Positives = 334/754 (44%), Gaps = 48/754 (6%)

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               K  +  L +    G         I         +  ++ EL +IA++++  YFL V 
Sbjct: 25   PPGKTAQQHLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIAQLEYEPYFLTVY 79

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +  A++  I +  GRGS A SV  + L IT ++P    LLFERF++ +R   PD D+D
Sbjct: 80   DIVTHAREKGI-LCQGRGSAANSVVCFCLGITGVNPTEVDLLFERFISAERKEPPDIDVD 138

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +  
Sbjct: 139  FEHERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWG 198

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  Q I    R       +P + R +E++  L G  RH S H  G V+    L +
Sbjct: 199  LSGGGIDRQHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDE 254

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------ 595
             VP+           +++   I++ GL+K D L L  LT ++K+ D + Q   +      
Sbjct: 255  TVPIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEK 314

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            + L+ +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 315  LTLASLPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPI 374

Query: 656  --DNIVVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
              D +  Y  R++G+E      P         +  +L +T+GV ++QEQ M+IA   + +
Sbjct: 375  QGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKF 434

Query: 706  SLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            +  EA+ LRRAM   +    +   +++ I G    G  +T A N F  +  F +YGF +S
Sbjct: 435  TPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPES 494

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN  
Sbjct: 495  HAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFS 554

Query: 825  CVDFKVG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
              D  +         +      I G        ++    + P+ ++ED   R+     +R
Sbjct: 555  QWDNILEETPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRLRL---DR 610

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R    L  A A       R   L ++  +            ++   +F     +   +  
Sbjct: 611  RAFTLLADADAFGSLDIDRRSALWAVRRLP----------NDETLPLFRAAAASELAQEP 660

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
              K     +S     +         GHPL   +  L   G+           G  +++A 
Sbjct: 661  RTKLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAG 720

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +V  +Q+  + KG  + ++T  +         +P
Sbjct: 721  VVTVRQRPGSAKG--VVFLTIEDETGIANIVVWP 752


>gi|300920134|ref|ZP_07136585.1| DNA polymerase III, alpha subunit [Escherichia coli MS 115-1]
 gi|300412831|gb|EFJ96141.1| DNA polymerase III, alpha subunit [Escherichia coli MS 115-1]
          Length = 566

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 233/576 (40%), Positives = 342/576 (59%), Gaps = 22/576 (3%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR 559


>gi|300900778|ref|ZP_07118922.1| DNA polymerase III, alpha subunit [Escherichia coli MS 198-1]
 gi|300355727|gb|EFJ71597.1| DNA polymerase III, alpha subunit [Escherichia coli MS 198-1]
          Length = 570

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 237/588 (40%), Positives = 346/588 (58%), Gaps = 24/588 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
           V+LA +  LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170 VELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVMRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      P D
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKN--GEPPLD 569


>gi|226357664|ref|YP_002787404.1| DNA polymerase III alpha subunit; Error-prone DNA polymerase dnaE2
            [Deinococcus deserti VCD115]
 gi|226319655|gb|ACO47650.1| putative DNA polymerase III alpha subunit; putative Error-prone DNA
            polymerase dnaE2 [Deinococcus deserti VCD115]
          Length = 1058

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 289/1034 (27%), Positives = 462/1034 (44%), Gaps = 62/1034 (5%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L   S +S     +S   ++ + A     A+ + D  ++  A+E  + A AA     +  
Sbjct: 17   LACQSYFSEGRSTVSPRRLVQRAADAGYSAVGLADWCSVAGAVELGEAARAA----GLAA 72

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + + +        +   P+   P +VLL     GY  L  L++ +    QG+    + L
Sbjct: 73   LVGVTLPVLFPAPPRSPAPYEPYP-VVLLARDRPGYAVLCRLITDV----QGQYPGGLPL 127

Query: 134  SWLQEIGTE---GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            S LQE G +    L+ LTGG +G             A   L T + +F   LYV L    
Sbjct: 128  SLLQETGRQFQDHLLCLTGGRTGFPTVLGEQREVARAAFYLRTLRGIFPFSLYVQLYHGA 187

Query: 191  GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS--TVVSQKDRPR 247
               +R R   +  LA   ELP+VA          DY   D L              DRPR
Sbjct: 188  APNERRRLEYLRGLARDLELPVVAAPEVCMADAADYCLLDALTCARLGIDVQTPHPDRPR 247

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 ++    E   +    P+AL N   IA  C+F L    P   R  E      Q   
Sbjct: 248  NDA-RHVGTPEEWGHLLPF-PDALLNAERIADWCTFEL---LPERLRSPEPRLRPFQ-TA 301

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L  +  A +  R + GA       +   +RL  EL  +A +  +G+FL  A+   + 
Sbjct: 302  QEVLEERVFAAVGSRYSPGA------REAALRRLKDELATVAHLDLAGFFLTAAEVTDYC 355

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +++ I +  GRGS AGSV  Y L IT  DP+  +LLFERFL+  R SMPD DID    RR
Sbjct: 356  REHGI-LAAGRGSAAGSVLCYLLGITLSDPIEHNLLFERFLHTGRTSMPDVDIDIASARR 414

Query: 428  DEVIRYVQNKYGHERV--AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            D+V+R+V+ ++G      A +    + + K+A++D+GRAL MP    DRL + +  D  H
Sbjct: 415  DQVLRWVEERWGLSGAGEAMVANRITYRMKSAIQDLGRALGMPPDLRDRLSRALGRDYGH 474

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLE-GLYRHASTHAAGIVIGDRPLSQLVP 544
                +A   +  F E     P  + LL + +++E G  RH + H+ G+V+   PL+   P
Sbjct: 475  LRPHRAREAEVAFTEVLGDAPVKEALLCLLERIEPGFVRHLAPHSGGVVLSSEPLTFYSP 534

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            + R       +T F+   +EK GLIK D LGL+ L  L+++ + + +   +        D
Sbjct: 535  LTRSSGGIRMLT-FDKDDVEKLGLIKLDLLGLRMLAALERAREEVLRLTNEWVPYGELPD 593

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYN 662
            D   +  +++  T+G+FQ+ES    Q    +QP  +  +   V+L RPGPI +     Y 
Sbjct: 594  DPRVWAEISSGDTMGLFQIESPAQVQMTARLQPKTMTQLAHQVALVRPGPIQSGTVHPYV 653

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KI 721
             R  G+E +      +  +L+ T G +++QEQ+++IA   +GY    AD  R  + K + 
Sbjct: 654  RRARGEEPVPERPEPLQSILRATHGTLMFQEQILRIAVHYAGYDWPHADRFRSRLSKVED 713

Query: 722  KEEMDKQKERFISGAS-KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              E+ + KE+F+SGA+   G     A  +FE+ A F  YGF +SHA A+A  SY +A+M+
Sbjct: 714  GHELAELKEQFLSGAALTCGAFPWEAEEVFEMCAMFRGYGFAESHAHAFAQHSYASAYMR 773

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YYSL 839
             HYP  + AA +T E   +       Q+ R+  + ++P  +N   + ++    R     L
Sbjct: 774  HHYPAAYFAAFLT-EAPGMWPANTIAQECRRRGVTLLPVCINRSGLSYRAESLRTIRVPL 832

Query: 840  AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             A++G+    AR I+        F +LED   R+D    +R   E LV AG L     SR
Sbjct: 833  TAVEGISEAKAREIVHERLIGGKFSTLEDAYDRIDL---SRDRFEKLVLAGGLTSIEPSR 889

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             + L  L  +          R      + A         I   +    +S+     + R 
Sbjct: 890  RKGLFGLTLL-------ANARKAGTRPLLA-------PGIEPPELPEMSSTEYLALDLRT 935

Query: 959  LGFYFSG-HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             G   +G HPLD ++  LR +G +          G+   +A ++V++Q+  T KG    +
Sbjct: 936  KGLSETGRHPLDAHRARLRDLGCQA---LGGLNHGDTAWVAGVIVARQRPPTAKG--FAF 990

Query: 1018 VTFSEPAKEYEANF 1031
                +     +A  
Sbjct: 991  YVLEDRTARLQAII 1004


>gi|218847814|ref|YP_002454607.1| DNA polymerase III, alpha subunit [Bacillus cereus G9842]
 gi|218546316|gb|ACK98708.1| DNA polymerase III, alpha subunit [Bacillus cereus G9842]
          Length = 1163

 Score =  618 bits (1595), Expect = e-174,   Method: Composition-based stats.
 Identities = 274/936 (29%), Positives = 452/936 (48%), Gaps = 97/936 (10%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG-TEGLIMLTGGS 151
                  +VLL    +G + L  +VS  ++ +      R  L+++++ G    +I  +   
Sbjct: 181  DHGNFHMVLLAINNKGLEDLYAIVSDAHI-NGFYSDPRTDLAYIRDRGLGNNIIATSACL 239

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVV-QLAYTHELP 210
                 +       + A++ +   K  F +  Y+  Q      +   + V+ QLA     P
Sbjct: 240  GSYFSQLVLAGRIEEAKEHIHECKDTFHE-FYLEKQATEIPKQIYVNAVIDQLAAETNTP 298

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
             + T +  + ++ED E HD+L+  +    ++ ++R     + ++K   EM+   +D+ EA
Sbjct: 299  KILTTDVHYANKEDNEIHDILVTSSIGKCINDENRLVYAHEFWMKTEEEMLVKCNDI-EA 357

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
             +NT+ IA + +  L    P+ P FI     D  +  E+ LR KA  GL     + A+  
Sbjct: 358  WKNTMRIANKVNVTLP-KEPLFPNFIV----DGSETVEDLLRKKAWDGL----FEMALTD 408

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
            G     Y +RL +EL+VI    F  YFLI  D I  A K    VGPGRGSGAGS+    L
Sbjct: 409  GIDVNSYSKRLQYELDVICSEGFQDYFLIEEDMIDAAVKAGFLVGPGRGSGAGSLVCRCL 468

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             IT +DP++++LLFERFLNP+R   PD D+D+  +    V+ Y++ KYG ++VAQI T G
Sbjct: 469  KITWLDPIKYNLLFERFLNPERAGYPDLDVDYSYEGTRFVLNYLKQKYGIDKVAQIGTKG 528

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            +L A+A  R  G+ L +  +  D   K IP+ P   +  +A A++S  ++     P   +
Sbjct: 529  TLAARAVCRRTGKTLGLDTATQDAFAKAIPSRPGITLK-EAYAEESMVQQYAQMYP---K 584

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
              E    LEG       HA GIV+   P++++ P+  D    +  TQ++M WIEK  L+K
Sbjct: 585  WWEAMLALEGHVSQVGVHAGGIVLSPEPITKVTPLRTDS-EGIETTQYDMVWIEKL-LVK 642

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL-GIFQLESSGMR 629
            FD L ++TL +++K+L+F    G       I  +D   +  +     L GIFQ ES   +
Sbjct: 643  FDVLKVETLDIVKKTLEFAGLWGKMNIYRDIDINDPLVFERVYNALNLSGIFQCESDLFK 702

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
            + +  M+P+  EDI  +V+L RPGP+D I  Y  RK G+E++      ++P+L+ET GV 
Sbjct: 703  KIISEMKPNSFEDISVIVALGRPGPLDLIPTYVARKWGREELKYPFSALEPVLQETYGVW 762

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM------------------------ 725
            +YQEQ+MQ +++L G +L ++D++R+ + KK  + M                        
Sbjct: 763  VYQEQIMQASRVLGGLTLGQSDMIRKGVSKKKHDLMNRWIDLMIYGSEEYKKRHAELVLQ 822

Query: 726  ---------------DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
                           D  K+ ++ GA   G  +   + I     KF +Y FNK+H+AAYA
Sbjct: 823  YPKDAEGKPTLWVDYDYAKQPYVEGAINRGFDEQTLLQIKIDWIKFGNYCFNKAHSAAYA 882

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK-----FCQDARQFNIQIMPPSVNTPC 825
            ++S  TAW+K +YPVEF++A +T      +K KK     + ++  +  I I+PP +N   
Sbjct: 883  LLSVVTAWLKCYYPVEFMSALLTFSERKKDKNKKPKNIYYMKECEEMGITILPPDINESM 942

Query: 826  VDFKV-----------------------GDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
              +                           N I Y L++I GV   T   IM    ++P+
Sbjct: 943  AGWAPIKTETKGIFLANSFAGFTTETINKSNEIRYGLSSIAGVSGETVDEIM---QNRPY 999

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             S+ED   RVD  K+N+  + +L+ +G+ D    +R  LL++    +   ++    +T  
Sbjct: 1000 KSVEDMLLRVDGSKVNKTKVTALIKSGSFDNLSKNRNLLLRNYMQFRNE-EYEHIPKTTN 1058

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              +I   EK  F   IT     V++   + E  +  
Sbjct: 1059 KGDIVDFEKECFGVSIT-----VKSRWEKLEEGKSA 1089



 Score = 83.5 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          HL VHS  S+LEG  ++ +++ K  +    A+ ITD     +  +F  +  A GI+PI G
Sbjct: 6  HLHVHSEESVLEGLSNVKHLVAKAKSSGMTALGITDHGVCSAIPDFITECLANGIKPIPG 65

Query: 73 CQLDID 78
          C++   
Sbjct: 66 CEVYTT 71


>gi|325001990|ref|ZP_08123102.1| error-prone DNA polymerase [Pseudonocardia sp. P1]
          Length = 886

 Score =  618 bits (1594), Expect = e-174,   Method: Composition-based stats.
 Identities = 248/869 (28%), Positives = 388/869 (44%), Gaps = 58/869 (6%)

Query: 184  VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L  H    D  R   +  LA    +  VAT  + + + +       + AV     + +
Sbjct: 1    MELTVHGEPCDTERNDALAALAAAAGVATVATTAAHYAAPDRAPLAATVAAVRARRSLDE 60

Query: 243  KD-RPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             D         +L++  EM   F D  P A+     + R  +F L + AP LP F   E 
Sbjct: 61   IDPWLPAAGTAHLRSGREMTRRFEDRHPGAVARAAGLGRELAFELHLVAPDLPPFDVPEG 120

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +     E + LR     G   R                  ++ EL +I    F GYFLIV
Sbjct: 121  E----TEASWLRALTERGRLQRYGSHDENPFAAYT-----VERELAIIEEKNFPGYFLIV 171

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + + ++ +I    GRGS A S   YAL IT++D +R  LLFERFL+PDR   PD D+
Sbjct: 172  HDIVDFCRREDI-FCQGRGSAANSAVCYALGITNVDAVRHGLLFERFLSPDRDGYPDIDL 230

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D    RR+E I+YV  +YG    AQ+    + + ++A+RD  RAL     Q D   K + 
Sbjct: 231  DIESGRREEAIQYVYRRYGRLFAAQVANVITYRPRSAVRDTARALGFSPGQQDAWSKRVE 290

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
               A   S      +   +   L       LL+++ +L G  RH   H+ G+VI DRP+S
Sbjct: 291  RWHALEASELGTGGEQTLQMPPL-------LLDLAGQLMGAPRHLGIHSGGMVICDRPVS 343

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599
            ++VP+      D  V Q++ +    AGL+KFD LGL  LT L    D +    G +++L 
Sbjct: 344  EVVPVEWARMEDRTVVQWDKEDCAAAGLVKFDLLGLGMLTALHLMADLVERNDGTRIELH 403

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
             I   D E Y +L+   ++G+FQ+ES      L  ++P    D++  V+L RPGPI    
Sbjct: 404  RIGESDPEVYAMLSRADSVGVFQVESRAQMATLPRLRPREFYDLVVEVALIRPGPIQGGS 463

Query: 659  -VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
               Y  R+N  +     HPL+ P L +T G+ ++QEQ+MQIA  ++G+S +EAD LRRAM
Sbjct: 464  VHPYIRRRNRIDDWEHDHPLLKPALDKTLGIPLFQEQMMQIAVDVAGFSAAEADELRRAM 523

Query: 718  -GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
              K+  E+M++ + RF  G + NGI+  +A  IF  +  FA++GF +SH+ ++A + Y +
Sbjct: 524  GAKRSTEKMERLRGRFFDGMAANGITGELAETIFTKMLAFANFGFPESHSISFAALVYYS 583

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-------FK 829
            AW K ++P  F AA +  +       +    DAR+  +++  P VN    D         
Sbjct: 584  AWFKLYHPAAFCAALLNAQPMGFYSPQSLVADARRHGVRVRRPDVNEGRADAILQPDPDS 643

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             G   +   L+ I+ +GT  A  +    A   PF  L D   RV          E+L  A
Sbjct: 644  TGGWAVRLGLSGIRTIGTDLAGAVDAVRASAGPFADLPDLARRVRLTG---PQAEALATA 700

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA  CFG  R + L +   +             + E++     G   D   L   +    
Sbjct: 701  GAFGCFGVERREALWAAGVV----------AGVRPEHLPGTAVG--FDAPALPGMTDAEL 748

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN------NIRLAAMVV 1002
            +V    +    G     HP+   +  L  +G    +      R         + +  +V 
Sbjct: 749  TVS---DVWATGVSPDSHPVQHLRGKLDGLGAVRIDRLDDVGRRAGPDAPPRVLVGGLVT 805

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             +Q+  T +G  + +V   + +       
Sbjct: 806  HRQRPATARG--VTFVNLEDESGMLNVTC 832


>gi|317125081|ref|YP_004099193.1| DNA polymerase III subunit alpha [Intrasporangium calvum DSM 43043]
 gi|315589169|gb|ADU48466.1| DNA polymerase III, alpha subunit [Intrasporangium calvum DSM
           43043]
          Length = 1391

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 273/1007 (27%), Positives = 446/1007 (44%), Gaps = 135/1007 (13%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           + SFVHL V S YS+  G      ++++ AA  QPA+A+TD + L+ A++F     A  +
Sbjct: 2   TDSFVHLHVASGYSMRYGTAKPEQLVERAAAFGQPALALTDRDGLYGAVKFVTACLAHDV 61

Query: 68  QPIIGCQLDIDM----------------QDNLKMTNQGKTPFPTVPSIVLLVSTAE---- 107
            PI+G  L +                  +        G    P +P + +L   +     
Sbjct: 62  APILGVDLALGPDPIEPRRYPGATGAVARSTRTPVRGGALVDPRLPRVTVLARGSRTGLP 121

Query: 108 ---GYQRLIELVSRMYLLDQGK----------------------------------QSVR 130
              G+  L   V+  +L  +                                     + R
Sbjct: 122 PGVGWAALCRFVTDTHLSGERGNPVTTARLLAEHANPAPEDPGPGKRAQRHTAGDEGTPR 181

Query: 131 ICLSWLQEIGTEG-----------------------LIMLTGGSSGPIDRAFFFNSSQVA 167
             ++   E    G                       L++L G  S  + RA       +A
Sbjct: 182 ERVAESVEPARSGKSVRPGRAVKLVRSGRTRSAPSRLVVLLGPDS-DVGRAVLAKKHSLA 240

Query: 168 EKRLLTFKKLFG-DRLYVNLQRHRGYDRYRES-----QVVQLAYTHELPLVATNNSLFLS 221
              L  ++ L   D L V +  H G +    S     +++ LA    +P V T       
Sbjct: 241 RALLEQWRDLLPRDGLVVEIVCHGGPEDLPGSLGQAGRMLALAGEVGVPTVITAAVRHAD 300

Query: 222 EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL-------------- 267
            +D    DVL A      + ++   RVT   +L     M ++  D+              
Sbjct: 301 PQDAAIVDVLDAARRLVALDERHLDRVTTAGHLSPTPVMHALARDVVQVSGPGLVGGGPL 360

Query: 268 -----PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE---EENELRNKAVAGL 319
                 E +  T  +A  C    +    I    + +      ++    +  L  +    +
Sbjct: 361 VRQLAAELVARTTALATECIQDPRADLGIGSVHLPEPGVLGIRDGVSPQAVLARRCRESI 420

Query: 320 EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
             R      ++         RL+ EL VI  + ++ YFL VA      ++  + V   RG
Sbjct: 421 ATRYPDHGTSELA---AVSARLEDELQVIETLGYATYFLTVAQVCDLIREMGVRVA-ARG 476

Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
           SGAGSV  Y L I+ ++P+R  LL ERF +P R  +PD DID    RR E+   V   +G
Sbjct: 477 SGAGSVVNYLLGISGVEPMRHGLLMERFCSPLRAELPDIDIDVESARRTEIYERVLGHFG 536

Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
            ERV  +    + + + A+RD G AL +P  ++D + K  P+  A  V   AIA+    R
Sbjct: 537 GERVTCVSMMDTYRVRHAIRDAGAALGLPPQEIDAMAKAFPHIAARNVR-NAIAELPELR 595

Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
            + L  P +  + +I ++L+GL RH + H  G+V+ D  L    P+        P++QF+
Sbjct: 596 ASGLDVPRLQLMYDIVERLDGLPRHIALHPCGVVLSDSGLLDRTPVE-ASWLGFPMSQFD 654

Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----RGVKVDLSLIPFDDHETYHLLTTK 615
              +E  GL+K D LG++  + + +++  + +    +    D + +PFDD ET+ L+ + 
Sbjct: 655 KDDVEALGLLKLDILGIRMQSAMAQAVAEVERVDGTKVDLDDEASVPFDDAETFELIRST 714

Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVS 673
            TLG FQ+ES G R+ +    P   EDII  +SL+RPGP   D IV + N + G ++   
Sbjct: 715 RTLGCFQIESPGQRELIGKFGPQTFEDIIIDISLFRPGPVKSDMIVPFLNARQGWKEPTY 774

Query: 674 IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
           +HP + P L+ET+GV+++ EQV+++    +G +L+EAD +RRA+G    +  +K ++ + 
Sbjct: 775 LHPTLVPALQETEGVVVFHEQVLKLVAETTGVTLAEADEVRRALG--SPQGQEKVEKWWR 832

Query: 734 SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
             A   G S+     I+++L  FA +GF K+HAAA+A+ +YQ+AW+KTH+P  FLA  +T
Sbjct: 833 PAALARGYSREDVDRIWDVLKAFASFGFCKAHAAAFALPTYQSAWLKTHHPAAFLAGVLT 892

Query: 794 LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTT 848
            +     K +    DAR F I I+   VN    +++      GD  I  SLA ++G+   
Sbjct: 893 HDPGMYPK-RLILDDARAFGITILGLDVNVSTGEYRFERTEDGDEAIRLSLADVRGISDL 951

Query: 849 TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               I+ A   +P+ SL DF  R    +++R   E LV AGA D   
Sbjct: 952 EIAGIVAA---QPYASLSDFWQRA---RVSRPTAERLVLAGAFDSLH 992



 Score =  108 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            +++L   Q  A     ++      +   +    +    L + +      R   E  VLG 
Sbjct: 1112 IRALAAAQSRAPAPVPSQVPVQLALDLGDTPRLTATSGLPEMTGP---ERVRAELEVLGL 1168

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
              SGH +D Y+P+L  +G+   +E ++   G  + +A + V+ Q    R G R+ ++T  
Sbjct: 1169 DASGHVVDFYRPMLDALGVARADELLSGRSGREVWVAGVKVATQTPPIRSGRRVVFLTLD 1228

Query: 1022 EPAKEYEANFF 1032
            +     +  FF
Sbjct: 1229 DATGPVDLTFF 1239


>gi|156564220|ref|YP_001429761.1| DNA polymerase III alpha subunit [Bacillus phage 0305phi8-36]
 gi|154622917|gb|ABS83797.1| DNA polymerase III alpha subunit [Bacillus phage 0305phi8-36]
          Length = 1348

 Score =  615 bits (1586), Expect = e-173,   Method: Composition-based stats.
 Identities = 275/1227 (22%), Positives = 501/1227 (40%), Gaps = 223/1227 (18%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            +K    VH+ +HS +S+ +          +        I +TD  N+   ++F +     
Sbjct: 33   KKPRRIVHIHMHSIFSIADAMCKPKETAKRAKQLGIDTIILTDHGNISGVIQFKKACEEE 92

Query: 66   GIQPIIGCQLDID-MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM--YLL 122
            GI+ I  C++     +  +   +  +  +     I ++    +G+  L  L+S    Y+ 
Sbjct: 93   GIKFIPACEMYEAKDRTVISKADCARGNWNASRHITMIPVNNQGWADLQHLISDANQYVY 152

Query: 123  DQGKQSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
               K   R  +++++  G  + +I  TG  +    +       + A++ +L    LF  R
Sbjct: 153  YAPKPLPRTDMNYIESNGLGKNIIATTGCLASETSQLILEGKEEEAKQEILRRNNLFY-R 211

Query: 182  LYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ +Q +   ++      +++++    +PLV   +  ++  +D +AH  L+A++    V
Sbjct: 212  YFLEIQDNGSREQEIVNEALIRISNDTGVPLVYAKDVHYVKPDDKDAHHALVAISRKQSV 271

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSD--LPE-ALENTVEIARRCSFILQVHAPILPRFIE 297
                    T  ++L +  E+     +  +P  A+ENT  IA  C+  ++++  ++P F  
Sbjct: 272  YDCAPYSGTNTYHLASADEVYQWADENNVPHSAIENTCWIADNCNVDIELNKDLMPEF-- 329

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA--QDYRQRLDFELNVIARMKFSG 355
              C D    + + L+      L +   +     GY    ++Y +R++ EL ++   K+  
Sbjct: 330  PYCPD-GHTDASYLKKLLFDNL-IGYVEFVEVNGYKINVKEYIERVEHELRIVTMKKYPS 387

Query: 356  YFLIVADFIQWAKKNN-------------------------------------------- 371
            YFL++ D + WA   N                                            
Sbjct: 388  YFLLLWDILLWASDRNKWLSYPQNKEWIEAEVHEVVVKVVKDKQTGKKKKVKRKVVSKPN 447

Query: 372  --------IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
                      VGPGRGS AGS+ A+ L IT +DP+++ L+FERFL+P R S PD D+DF 
Sbjct: 448  AKYAFYPEFLVGPGRGSAAGSMMAFLLDITRLDPIQYGLMFERFLSPYRDSPPDIDVDFP 507

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA------------------- 464
             D  D ++ +V  +YG ++ AQ++TF   + K+++  + +A                   
Sbjct: 508  GDNHDMLLDFVAQRYGRDKTAQVLTFTKFKLKSSIDKICKALEKRDPDNPKKVLEYGYKV 567

Query: 465  -------------LQMPYSQVDRLCKLIPNDPAHPVS--------LQAIADDSRFREARL 503
                               Q D   K +     HP +         + +    +FR+   
Sbjct: 568  ADEVKATLKETGDQGKMPDQKDCTYKDMMEISVHPENYARYGGSLSKFVEASKQFRKLMT 627

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD---LPVTQFNM 560
              P    L +   K+EG    +  HA G++I  RPL    P  +        LP+T ++ 
Sbjct: 628  KYPE---LNDYLGKIEGAIDTSGIHAGGVIISKRPLDLDCPTIKPTEKSKAVLPITMWDY 684

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               E  GL+K D L   TL ++  ++D + Q  G ++D+  I  DD + + ++    T G
Sbjct: 685  PDCESVGLLKMDLLRTSTLRIISTTIDLIEQSTGKRIDIYSIGRDDPKAFEVMAKGETHG 744

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI----------VVYNNRKNGKE 669
            +FQ+   G+      + P   E++I +++L+RPGP+D             V N  +  KE
Sbjct: 745  LFQVAGRGITAYTRQVAPAKQEEVIDILALFRPGPLDATLENGNTIAQQYVLNGSRKPKE 804

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +  +HP +  +LK+++G ++YQEQ+M + Q+++GY+L  AD  RR +GKK  +EM K  
Sbjct: 805  YLSDVHPDMRALLKQSRGQMVYQEQIMGLVQVIAGYNLGHADNFRRVIGKKKIDEMPKLY 864

Query: 730  ERFISGAS----------------------------------------------KNGISK 743
            + F+ G                                                +N I K
Sbjct: 865  DEFMYGHKYVIEKFENLLAKYDSMPKHTDKDGNEGVIIKSDYDGNDLFLRKQDIENTIKK 924

Query: 744  -TIAVNIFELL--------AKFADYGFNKSHAAA-----------YAVISYQTAWMKTHY 783
               A++  E++          FA   F++  A A           YA  +YQTAW+K HY
Sbjct: 925  NKKAMDSHEIVGAVTNNYKESFAKNLFSQMAAFAGYAFNKSHSACYADETYQTAWLKVHY 984

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+ A +++   + EK  +  ++A++  I+I+PP +N    DF      I + + +I 
Sbjct: 985  PVEFMTALLSVRGGDKEKTMENLKEAKRMGIRILPPDINKSYADFSPDAGAIRFGIFSIA 1044

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRV----------DSKKLNRRVLESLVFAGALD 892
            GVG    R I+     +  +   +DF +R            S  +NR V+ +L+ AG  D
Sbjct: 1045 GVGEKAVRAIVRERDNNGDYKDFDDFYTRCVVKFVKTEEQKSNPINRGVIRTLIEAGCFD 1104

Query: 893  CFGYSRMQLLQSLD-NIQKYAQWVEKNRT-----NKHENIFAHEKGTFSDKITLEKFSVE 946
             F  +R  LL   +  ++K   W            K  + FA++   F            
Sbjct: 1105 TFERNRYNLLNHYNFTLRKDKVWNGLEEDLLTSKEKANHSFAYDPAQF------------ 1152

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            N     + E  ++G Y SG P   Y+  L    +   + S          +   +   + 
Sbjct: 1153 NEKRMLQMEHELIGIYVSGSP---YED-LPFTPLLDMDVSRGRRDKKEYDVGGRITKVRT 1208

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             KT++   + +V      +  E   FP
Sbjct: 1209 IKTKRKEDMAFVEIETQLEPLEFTVFP 1235


>gi|329115409|ref|ZP_08244163.1| Error-prone DNA polymerase 2 [Acetobacter pomorum DM001]
 gi|326695388|gb|EGE47075.1| Error-prone DNA polymerase 2 [Acetobacter pomorum DM001]
          Length = 765

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 205/705 (29%), Positives = 337/705 (47%), Gaps = 34/705 (4%)

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
             F+L +I RM+++ YFL V   + +A+  +I +  GRGS A S   Y L IT IDP R S
Sbjct: 9    QFKLGLIGRMEYAPYFLTVNSIVCYARSQDI-LCQGRGSAANSAVCYVLGITAIDPARNS 67

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERF++ +R   PD D+DF   RR++VI++V   YG +R A        +AK ALRDV
Sbjct: 68   LLFERFVSEERGEPPDIDVDFEHARREQVIQWVYEHYGRDRAALTAVVIRYRAKGALRDV 127

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            G+ + +P   +  L   I +     +   A+ D        L+D  V   L++ + L G+
Sbjct: 128  GKVMGLPEDLIRTLSGQI-HGWGRKLDDDALHDSG----IDLSDRRVRLTLDLVRCLIGV 182

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             RH S H  G V+    L +LVP+         + +++   I+    +K D L L  LT 
Sbjct: 183  PRHLSQHPGGFVLTHDRLDELVPIEPASMEARQIIEWDKDDIDVLKFMKVDILALGMLTC 242

Query: 582  LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++  LD LA+       L  IP +D  TY ++    T+G+FQ+ES      L  ++P   
Sbjct: 243  MKTGLDLLAEHKDQHFTLQSIPAEDPRTYAMIRKADTIGVFQIESRAQMSMLPRLKPRVF 302

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
             D++  V++ RPGPI  D +  Y  R+ G E+     P ++ +L +T G+ ++QEQ MQ+
Sbjct: 303  YDLVIEVAIVRPGPIQGDMVHPYLRRREGLEREDYPTPELEAVLSKTLGIPLFQEQAMQV 362

Query: 699  AQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            A + +G++ +EAD LRRAM   K    + + ++R I G   NG  +  A  I++ L  F 
Sbjct: 363  AMICAGFTAAEADQLRRAMATFKNTGTVSQFQKRLIEGMRANGYPEEFAERIYQQLEGFG 422

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             YGF +SHAA++A+++Y ++WMK  +P  FLA+ +  +        +  +DAR+  ++I 
Sbjct: 423  SYGFPESHAASFAILAYSSSWMKCTHPDVFLASLLNSQPMGFYAPAQLVRDAREHGVEIW 482

Query: 818  PPSVNTPCVDFKV-------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
            P  VN    D  +       G   +   ++ +KG+    A  I+ A + +PF S++D   
Sbjct: 483  PVCVNASRWDSTLEGPERPDGMFAVRLGMSLVKGLANDDAARIVAARSSRPFTSVDDLWR 542

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            R   K      L  L  A A             SL   ++ A W  K   ++   +FA  
Sbjct: 543  RAGVKA---AALTHLAEADAFR----------PSLGLARREALWAIKALRDEPLPLFAAA 589

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
            + T   +                 +   LG     HPL   +  LR   I    +++   
Sbjct: 590  EVTREAEEPDVLLQPMRDGAEVVRDYNRLGLTLRDHPLTFLREDLRAQDIVTCRDALNAK 649

Query: 991  RGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G    + +A +V+ +Q+  + +G  + ++T  +         +P
Sbjct: 650  DGKRLTVAVAGLVLVRQRPGSAEG--VVFMTLEDETANMNVIIWP 692


>gi|307086146|ref|ZP_07495259.1| putative PHP domain protein [Mycobacterium tuberculosis SUMu012]
 gi|308364390|gb|EFP53241.1| putative PHP domain protein [Mycobacterium tuberculosis SUMu012]
          Length = 716

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 224/747 (29%), Positives = 375/747 (50%), Gaps = 39/747 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
            A     A+A+TD + L+ A+ F++ A    ++ + G       + +L  T + + P P 
Sbjct: 1   AARLGLCALALTDHDGLYGAVRFAEAAAELDVRTVFGA------ELSLGATARTERPDPP 54

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            P +++L    EGY+RL   ++  +L    K   R     L E       +LTG   G +
Sbjct: 55  GPHLLVLARGPEGYRRLSRQLAAAHLAGGEKGKPRYDFDALTEAAGGHWHILTGCRKGHV 114

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVA 213
            +A        A++ L      F   R+ + L  H    D  R + +  LA    + +VA
Sbjct: 115 RQALSQGGPAAAQRALADLVDRFTPSRVSIELTHHGHPLDDERNAALAGLAPRFGVGIVA 174

Query: 214 TNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE 272
           T  + F           + A+    ++ S           +L++  EM  +F+  PEA+ 
Sbjct: 175 TTGAHFADPSRGRLAMAMAAIRARRSLDSAAGWLAPLGGAHLRSGEEMARLFAWCPEAVT 234

Query: 273 NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
              E+  RC+F LQ+ AP LP F   +       E++ LR+  +AG   R      A   
Sbjct: 235 AAAELGERCAFGLQLIAPRLPPFDVPDG----HTEDSWLRSLVMAGARERYGPPKSAPRA 290

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
           ++     +++ EL VIA+++F GYFL+V D  ++ + N+I +  GRGS A S   YAL +
Sbjct: 291 YS-----QIEHELKVIAQLRFPGYFLVVHDITRFCRDNDI-LCQGRGSAANSAVCYALGV 344

Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
           T +DP+   LLFERFL+P R   PD DID   D+R++VI+YV +KYG +  AQ+    + 
Sbjct: 345 TAVDPVANELLFERFLSPARDGPPDIDIDIESDQREKVIQYVYHKYGRDYAAQVANVITY 404

Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
           + ++A+RD+ RAL     Q D   K + +                  +A   D   ++++
Sbjct: 405 RGRSAVRDMARALGFSPGQQDAWSKQVSHWTG---------------QADDVDGIPEQVI 449

Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
           +++ ++  L RH   H+ G+VI DRP++ + P+     ++  V Q++       GL+KFD
Sbjct: 450 DLATQIRNLPRHLGIHSGGMVICDRPIADVCPVEWARMANRSVLQWDKDDCAAIGLVKFD 509

Query: 573 FLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            LGL  L+ L  + D +A+   ++VDL+ +   +   Y +L    ++G+FQ+ES      
Sbjct: 510 LLGLGMLSALHYAKDLVAEHKGIEVDLARLDLSEPAVYEMLARADSVGVFQVESRAQMAT 569

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
           L  ++P    D++  V+L RPGPI       Y  R+NG + ++  HP + P L++T GV 
Sbjct: 570 LPRLKPRVFYDLVVEVALIRPGPIQGGSVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVP 629

Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASK-NGISKTIAV 747
           ++QEQ+MQ+A   +G+S +EAD LRRAM  K+  E M + + RF  G    +G    +  
Sbjct: 630 LFQEQLMQLAVDCAGFSAAEADQLRRAMGSKRSTERMRRLRGRFYDGMRALHGAPDEVID 689

Query: 748 NIFELLAKFADYGFNKSHAAAYAVISY 774
            I+E L  FA++GF +SHA ++A + +
Sbjct: 690 RIYEKLEAFANFGFPESHALSFASLVF 716


>gi|171920472|ref|ZP_02931773.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 1 str.
            ATCC 27813]
 gi|171902930|gb|EDT49219.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 1 str.
            ATCC 27813]
          Length = 969

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 300/1032 (29%), Positives = 495/1032 (47%), Gaps = 110/1032 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F++L VHS YSLL   LS+++++     ++QP + +TD NN++  +EF  KA A  + PI
Sbjct: 2    FINLNVHSHYSLLNSTLSIDDLIKYALDNKQPYVCLTDLNNMYGCIEFYDKAKAHNLTPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + +                     ++V       GY +LI+  S +    +    ++
Sbjct: 62   IGLEFEY-----------------QNATLVAYAKNYNGYLKLIKWSSWIMTSKEF--EIQ 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                 L       +I+      G I                     +F +  +       
Sbjct: 103  DDFEDL-------IIV---CKKGDI---------------------VFKNSNFYQTHDQN 131

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVT 249
              +                  +A  +  + ++ D      ++A+ +   +   K+     
Sbjct: 132  APNA-----------------IALQSVFYANKSDKIVFLAMLAIKNDLKLEDFKNCCDFD 174

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +H+L     +   F   P AL N  ++       +    PI     +K+   I  E   
Sbjct: 175  NNHFL--TDYLAQSF-FSPIALNNLNKVLNELKVQIHD-LPINIPVYDKQNSIISSEI-- 228

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L+   ++GL+ RL       G   + Y QRL +EL+VI   +F  YFLIV DFI +AK 
Sbjct: 229  -LKQLCISGLKKRLNAH---DGQVNKIYVQRLKYELDVINEKQFDDYFLIVYDFINFAKS 284

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D   ++RD 
Sbjct: 285  NGIIVGPGRGSAAGSLVAYCLHITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKRDL 344

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI Y+  KYG++ VA I+TF  L+AK A+RDVGR L +    +D++CK I  +    + L
Sbjct: 345  VIEYLFEKYGNDHVAYILTFQRLKAKMAIRDVGRILGIDLKVIDKICKNIKPEYDEDLDL 404

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             AI  ++  +E  L       L EIS+KL    R   THAAGI++ D  +S ++P+   +
Sbjct: 405  -AIKKNTILKEMYL---LHKELFEISKKLINAPRQIGTHAAGIILSDSLISNIIPIQLGI 460

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D P++Q++M+++E+ GLIK D LGLK LT++   L  + +    K+DL  I ++D   
Sbjct: 461  N-DRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIHENQNKKIDLFNIDYNDKFV 519

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            +  L    T GIFQLES GM++ L  ++P  IEDI  + +L+RPGP  NI  +  R+  +
Sbjct: 520  FEDLAKARTNGIFQLESPGMKKVLLKVKPHNIEDISIVSALFRPGPQQNIKTFVERRFKR 579

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E+    +     +L+ T G+I+YQEQV+++ + ++ + ++ +D  RRA+ KK ++ + + 
Sbjct: 580  EEFSYWNEATRKILEPTYGIIVYQEQVIELVKTIANFDIATSDNFRRAISKKDEKILIQL 639

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K+ FI+GA  N   + +   IFE +  FA YGFN SH+ AY+ ISY  A++K +Y +EFL
Sbjct: 640  KDDFINGALNNNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYTLEFL 699

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVG 846
            +  ++    + +K+  +  +A++FNI I  P +     DF +   +  I +    IKG G
Sbjct: 700  SVLLSHTSASKDKLLSYLNEAKEFNISIKGPDIQYFSNDFVIDTQKQIIRFGFKTIKGFG 759

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKL---NRRVLESLVFAGALDCFGYSRMQLLQ 903
                + I  A       +L D+ S +D+ K    + + +E L+  G  D FG        
Sbjct: 760  DELLKKIKSALQK---STLSDYISYIDALKKGNVSLKNIEILIRVGTFDSFG-------- 808

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR-FENEQRVLGFY 962
             ++ +       E          F          + L+     + + R  ++E + LG  
Sbjct: 809  -INRLFLLNNLNEIFEKTGLNGHFFDLN-----LVGLDYAKDMSVNDRYLDDEIQYLGID 862

Query: 963  FSGHPLDVYKPILRKMGIK-GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV-TF 1020
             +      YK  +    +K   ++           + A V++ +Q KT+ G+ I ++ T 
Sbjct: 863  LNSLNYANYKTEIDYNKLKYTIKDFYEINTNYETNILAQVLNIKQSKTKNGNDIFYLETL 922

Query: 1021 SEPAKEYEANFF 1032
             +  K+     F
Sbjct: 923  IDNKKQT-LTIF 933


>gi|220917436|ref|YP_002492740.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-1]
 gi|254777924|sp|B8JAF5|DNAE2_ANAD2 RecName: Full=Error-prone DNA polymerase
 gi|219955290|gb|ACL65674.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-1]
          Length = 1142

 Score =  612 bits (1578), Expect = e-172,   Method: Composition-based stats.
 Identities = 214/751 (28%), Positives = 348/751 (46%), Gaps = 54/751 (7%)

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR     G   R        G   +D  ++L  EL+++  + ++ YFL V D +++A
Sbjct: 368  MSLLRELVREGARWRYG------GEPPEDVARQLARELDLVESLGYASYFLTVWDVVRFA 421

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A S   Y L IT IDP+R  LLFERF++ +R   PD D+DF  +RR
Sbjct: 422  RSRGI-LCQGRGSAANSAVCYVLGITSIDPVRMGLLFERFISAERGEPPDIDVDFEHERR 480

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV  +YG +R   +    + + K+ALRDVG+AL +   QVDRL KLI        
Sbjct: 481  EEVLQYVYQRYGRDRAGMVCEVITYRGKSALRDVGKALGLSLGQVDRLAKLIGTYEDLGQ 540

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +   +    A      V   L ++++L+G  RH S H  G VI  RPL + VP+  
Sbjct: 541  VGPELLAQAGLDAA--DSERVRMTLALARELQGFPRHLSIHVGGFVITRRPLCETVPIEP 598

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV----------KVD 597
                   + Q++   + +  L+K D LGL  LT L ++L  LA+                
Sbjct: 599  AAMPGRTIVQWDKDDLSELDLLKVDLLGLGMLTALSRALALLARHRPAPASPTAVPHPDA 658

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID- 656
            L+ IP +D E Y +L    ++G+FQ+ES         ++P    D++  V++ RPGPI  
Sbjct: 659  LATIPAEDPEVYEMLGRADSIGVFQVESRAQMSLAPRLRPRNFYDLVISVAIIRPGPIQG 718

Query: 657  -NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  Y  R++GKE++   +  ++P+L  T GV ++QEQ M++A + +G++  EAD LRR
Sbjct: 719  GMIHPYLRRRDGKEQVRYPYAPLEPVLARTLGVPLFQEQAMRLAVIAAGFTPGEADELRR 778

Query: 716  AMGKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
             M  +   E++   K R ++G ++ GIS   A  IF+ L  FA YGF +SHAA++A++ Y
Sbjct: 779  VMTHRRSHEKLAAMKARLVAGMAERGISGADAEEIFKQLLGFAGYGFPESHAASFALLVY 838

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             +AW+K ++P  F  A +  +           +DA++  +++    V     +  +    
Sbjct: 839  ASAWLKRYHPAAFACALLNSQPMGFYAPHTLVEDAKRHGVEVRGVDVGCSGWESSLEGAA 898

Query: 835  I------------YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                            L A++G+       I+EA A  PF S+ +   R      +R  L
Sbjct: 899  PGRPAAPGETAVLRVGLHAVRGLPRAVGEAILEARAAGPFGSVAELVRRARL---SRAWL 955

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
              L  AGAL      R             A W          ++FA        ++ L  
Sbjct: 956  VRLAEAGALGALAPDRRD-----------AVWRSLAVEADGGDLFAGLAPP-EPEVALPA 1003

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             S  +       +    G    GHP+ + +P L    I+   E         + +A +V+
Sbjct: 1004 ASAADE---VSADFATTGLSVRGHPMALVRPGLGGDRIRTARELGRLPDRAPVEVAGLVI 1060

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +Q+ +T +G  I +V+  +          P
Sbjct: 1061 VRQRPETARG--IVFVSLEDETGIANLVVMP 1089



 Score =  204 bits (518), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 68/302 (22%), Positives = 109/302 (36%), Gaps = 35/302 (11%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +  +P +  L+  S +S LEGA     ++ + A     A+A+ D N L+  +    +A  
Sbjct: 1   MSHAPRYAELRCKSCFSFLEGASHPEELVGRAAELGLSALALADVNGLYGIVRAHAEAKR 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+  I+G +L +                     +VLL    EGY  L  LV+R +  + 
Sbjct: 61  QGLPLIVGAELVVA-----------GLAPGRPARLVLLAQDREGYAGLCRLVTRAHCGEG 109

Query: 125 GKQSV-RICLSWLQ------EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              +  R     +         G  GL  L  G+ G                 +   K  
Sbjct: 110 WTGAPERRERDAVAVPFEAVAAGARGLFALYPGADGD---------------AVARLKDA 154

Query: 178 FGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
           FG R  + + RHR   +  R            +P+  TN+    +       DVL  V H
Sbjct: 155 FGRRAALAVTRHRVAGEEARVLAARSAGRRLGVPVAVTNDVHTHARARQVLQDVLTCVRH 214

Query: 237 STVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
            T V +  R      +  LK   E+  ++SD PE L    +IA +C F ++      P  
Sbjct: 215 GTTVDRAGRRLFPNAERTLKGPEELARLWSDFPEGLAAAADIADQCRFRMEEIRGEHPLP 274

Query: 296 IE 297
             
Sbjct: 275 PV 276


>gi|83319615|ref|YP_424605.1| DNA-directed DNA polymerase III (polc) [Mycoplasma capricolum subsp.
            capricolum ATCC 27343]
 gi|83283501|gb|ABC01433.1| DNA-directed DNA polymerase III (polc) [Mycoplasma capricolum subsp.
            capricolum ATCC 27343]
          Length = 986

 Score =  612 bits (1578), Expect = e-172,   Method: Composition-based stats.
 Identities = 284/1025 (27%), Positives = 474/1025 (46%), Gaps = 92/1025 (8%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L + S Y+ LE  +++++ +  I  +        +T+ ++   EF +KA    I+PII  
Sbjct: 7    LTIKSEYNFLESLITIDSYIKFIKKNNFSYAFYNETHTMYGVAEFFKKAIDNNIKPII-- 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                           G T       + +     +GYQ L  L S  +L D          
Sbjct: 65   ---------------GLTLELEENKLCIYAKNRQGYQILNYLSS--FLNDGFSHHDYEIK 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
             ++  +    +I++  G    +D      +              F D   +NL       
Sbjct: 108  EYILNLVNNNVIVI--GLISDLDFKISLKNQ---------LNNDFYDVKELNLYF----- 151

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR--PRVTPD 251
                                 N   +L   D    ++L A+  +  + Q         PD
Sbjct: 152  ---------------------NQISYLDINDQRIFNILNAIKTNKTIDQIQNINNYFYPD 190

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA-PILPRFIEKECDDIQKEEENE 310
                +++           +LEN  ++    +  +  +      + + K  +         
Sbjct: 191  IDYLSKN----------YSLENIKKVISEINSKVDFNLFDSNEKHLVKYKNINNLSSFEY 240

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR   +  L+    Q  I      + Y  RL++EL +I +M FS YFLIV+D++ +AKKN
Sbjct: 241  LRQVCLLSLKK--YQQKIKPNLDLKLYINRLNYELEIIKQMGFSDYFLIVSDYVNFAKKN 298

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I VGPGRGS AGS+ +Y L ITDIDPL + LLFERFLNPDR ++PD D+DF  +RR+EV
Sbjct: 299  DILVGPGRGSAAGSLISYLLRITDIDPLEYDLLFERFLNPDRSNLPDIDLDFQDNRREEV 358

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + Y+  KYG   V  I T+ ++  K A RDV R   +    V+++ K++  D        
Sbjct: 359  LEYLFEKYGKNHVGMITTYQTIGYKMAWRDVCRVFNIDLLIVNKISKVL--DQYTNSDFL 416

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +++       +     +     K+ GL R  STHAAGIV+ D  L +LVP+ +   
Sbjct: 417  EFIKENKLLNDYFQNDLFKEIFITMHKIVGLPRQTSTHAAGIVLTDCDLRELVPI-KIGF 475

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
            + +  TQF+M +++  GLIK D LGL+ LT +Q+    +   + +K+ L+ I  +D + +
Sbjct: 476  NGINQTQFDMNYLDALGLIKMDILGLRNLTTIQEIKHLIYLNQNLKISLNKIDLNDKKAF 535

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL  K T GIFQLES GM   +  MQ D IE I    +LYRPGP + I +Y   K    
Sbjct: 536  ELLKNKQTSGIFQLESKGMTDLISKMQVDSIELISIASALYRPGPQEMIPIYLENKK-TN 594

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K   I   +  +LK T G+I+YQEQVMQ+   ++ +S ++AD++RRAM KK  + M   K
Sbjct: 595  KFKIIDKSVYEILKPTYGIIVYQEQVMQMLNKVANFSYAKADIIRRAMSKKNNKVMQSMK 654

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI+ A KN  S   A  I+  + KF++YGFNKSH+ +Y+ ISY  A+ K H+  EF  
Sbjct: 655  LEFINSAIKNNFSYNKANLIWNWIEKFSNYGFNKSHSISYSYISYWLAYFKAHFTTEFYT 714

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            + +   + N  K +++ ++   + I++  PSV     ++K+ + +IY  L  IK +G   
Sbjct: 715  SLLDQNIGNEIKTQQYIKELYDYKIKVNKPSVINSNFNYKIINKQIYMPLTCIKSIGYEV 774

Query: 850  ARHI--MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             + I   ++  +  +  + +F   V  +K+N  VL++L+ AGALD F Y++  ++++LD 
Sbjct: 775  VKKINLAKSENENMYLDIHNFILAVIKQKINVNVLQTLIKAGALDIFNYNKKTMIENLDL 834

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +   A   ++                  +KI L  +      +    E+ + GF+   +P
Sbjct: 835  LISQANAYKQVNNI-----------LDDEKINLIIYDEYEDEILASFEKELYGFFIDQNP 883

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            +   K       +    +           +   ++  ++ K +  +++ +VT  +   E 
Sbjct: 884  ILKLKT--NNFNL-NLIDISKLEYNKVQVILGYILKIKEIKDKNNNKMAFVTVFDNTSEL 940

Query: 1028 EANFF 1032
            E   F
Sbjct: 941  ELTIF 945


>gi|13357977|ref|NP_078251.1| DNA polymerase III DnaE [Ureaplasma parvum serovar 3 str. ATCC
            700970]
 gi|170762126|ref|YP_001752499.1| DNA polymerase III DnaE [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|183508625|ref|ZP_02958129.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 14 str.
            ATCC 33697]
 gi|186701626|ref|ZP_02971330.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 6 str.
            ATCC 27818]
 gi|14194693|sp|Q9PQ74|DPO3A_UREPA RecName: Full=DNA polymerase III subunit alpha
 gi|11356840|pir||D82895 DNA polymerase III alpha chain 2 UU415 [imported] - Ureaplasma
            urealyticum
 gi|6899403|gb|AAF30826.1|AE002138_13 DNA polymerase III alpha chain 2 [Ureaplasma parvum serovar 3 str.
            ATCC 700970]
 gi|168827703|gb|ACA32965.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 3 str.
            ATCC 27815]
 gi|182676084|gb|EDT87989.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 14 str.
            ATCC 33697]
 gi|186700858|gb|EDU19140.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 6 str.
            ATCC 27818]
          Length = 969

 Score =  611 bits (1577), Expect = e-172,   Method: Composition-based stats.
 Identities = 301/1032 (29%), Positives = 494/1032 (47%), Gaps = 110/1032 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F++L VHS YSLL   LS+++++     ++QP + +TD NN++  +EF  KA A  + PI
Sbjct: 2    FINLNVHSHYSLLNSTLSIDDLIKYALDNKQPYVCLTDLNNMYGCIEFYDKAKAHNLTPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + +                     ++V       GY +LI+  S +    +    ++
Sbjct: 62   IGLEFEY-----------------QNATLVAYAKNYNGYLKLIKWSSWIMTSKEF--EIQ 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                 L  +  +G I+                                    Y   Q H 
Sbjct: 103  DDFDDLIIVCKKGTIVFKSP------------------------------NFY---QTHD 129

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVT 249
                            +    +A  +  + ++ D      ++A+ +   +   K+     
Sbjct: 130  ---------------QNAPNAIALQSVFYANKNDKIVFLAMLAIKNDLKLEDFKNCCDFD 174

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +H+L     +   F   P AL N  ++       +    PI     +K+   I  E   
Sbjct: 175  NNHFLN--DNLAQSF-FSPIALNNLNKVLNELKVQIHD-LPINIPVYDKQNSIISSEI-- 228

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L+   ++GL+ RL       G   + Y QRL +EL+VI   +F  YFLIV DFI +AK 
Sbjct: 229  -LKQLCISGLKKRLNAN---DGQVNKIYVQRLKYELDVINEKQFDDYFLIVYDFINFAKS 284

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D   ++RD 
Sbjct: 285  NGIIVGPGRGSAAGSLVAYCLHITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKRDL 344

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI Y+  KYG++ VA I+TF  L+AK A+RDVGR L +    +D++CK I  +    + L
Sbjct: 345  VIEYLFEKYGNDHVAYILTFQRLKAKMAIRDVGRILGIDLKVIDKICKNIKPEYDEDLDL 404

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             AI  ++  +E  L       L EIS+KL    R   THAAGI++ D  +S ++P+   +
Sbjct: 405  -AIKKNTILKEMYL---LHKELFEISKKLINAPRQIGTHAAGIILSDSLISNIIPIQLGI 460

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHET 608
              D P++Q++M+++E+ GLIK D LGLK LT++   L  +   +  K+DL  I ++D   
Sbjct: 461  N-DRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIYENQNKKIDLFNINYNDKFV 519

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            +  L    T GIFQLES GM++ L  ++P  IEDI  + +L+RPGP  NI  +  R+  +
Sbjct: 520  FEDLAKARTNGIFQLESPGMKKVLLKVKPQNIEDISIVSALFRPGPQQNIKTFVERRFKR 579

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E+    +     +L+ T G+I+YQEQV+++ + ++ + ++ +D  RRA+ KK ++ + + 
Sbjct: 580  EEFSYWNEATRKILEPTYGIIVYQEQVIELVKTIANFDIATSDNFRRAISKKDEKILIQL 639

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K+ FI+GA  N   + +   IFE +  FA YGFN SH+ AY+ ISY  A++K +Y +EFL
Sbjct: 640  KDDFINGALNNNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYTLEFL 699

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVG 846
            +  ++    + +K+  +  +A++FNI I  P +     DF +   +  I +    IKG G
Sbjct: 700  SVLLSHTSASKDKLLSYLNEAKEFNISIKGPDIQYFSNDFVIDTQKQIIRFGFKTIKGFG 759

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKL---NRRVLESLVFAGALDCFGYSRMQLLQ 903
                + I  A       +L D+ S +D+ K    + + +E L+  G  D FG        
Sbjct: 760  DELLKKIKSALQK---STLSDYISYIDALKKGNVSLKNIEILIRVGTFDSFG-------- 808

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR-FENEQRVLGFY 962
             ++ +       E          F          + L+     + + R  ++E + LG  
Sbjct: 809  -INRLFLLNNLNEIFEKTGLNGHFFDLN-----LVGLDYAKDMSVNDRYLDDEIQYLGID 862

Query: 963  FSGHPLDVYKPILRKMGIK-GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV-TF 1020
             +      YK  +    +K   ++           + A V++ +Q KT+ G+ I ++ T 
Sbjct: 863  LNSLNYANYKTEIDYNKLKYTIKDFYEINTNYETNILAQVLNIKQSKTKNGNDIFYLETL 922

Query: 1021 SEPAKEYEANFF 1032
             +  K+     F
Sbjct: 923  IDNKKQT-LTIF 933


>gi|325663123|ref|ZP_08151573.1| hypothetical protein HMPREF0490_02314 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470577|gb|EGC73807.1| hypothetical protein HMPREF0490_02314 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 550

 Score =  611 bits (1577), Expect = e-172,   Method: Composition-based stats.
 Identities = 198/566 (34%), Positives = 314/566 (55%), Gaps = 20/566 (3%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            VH+ YSLL+G+  +   + ++      + AITD   +F  ++F + A AAGI PI+GC+
Sbjct: 2   HVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMFGVIDFYRAAKAAGINPILGCE 61

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
           + +           G         +VLL    +GYQ L+++VS+ ++        RI + 
Sbjct: 62  VYVAPGSRFDHEINGGE--DRYYHLVLLAENNQGYQNLMKIVSKGFVEG-YYYKPRIDIE 118

Query: 135 WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRHRGYD 193
            L+E   EG+I L+   +G + +       + A++  L ++ +F     ++ LQ H   +
Sbjct: 119 LLEEYH-EGIIALSACLAGEVQKNLLRGMFEEAKQAALRYESIFGKGNFFLELQDHGLTE 177

Query: 194 RY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
           +     ++++LA    + LVATN+  +   ED + HD+L+ +     ++ ++R R     
Sbjct: 178 QADVNQRLIRLAAETGIELVATNDVHYTYAEDEKPHDILLCIQTGKKLTDENRMRYAGGQ 237

Query: 253 YL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
           Y  K+  EM+ +F    +ALENT +IA RC   ++     LP++               L
Sbjct: 238 YYVKSEQEMIELFPYARQALENTQKIADRCHVEIEFGVTKLPKYDVPGGM----TSWEYL 293

Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                 GLE R            ++ ++RL +EL+ I  M +  YFLIV DFI++A+ N+
Sbjct: 294 NQLCFEGLERRYPN-------PGEELKERLSYELSTIKNMGYVDYFLIVWDFIKYARDND 346

Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
           I VGPGRGS AGS+ +Y L IT+IDP+R+ LLFERFLNP+R+SMPD DIDFC +RR EVI
Sbjct: 347 ISVGPGRGSAAGSIVSYCLGITNIDPIRYQLLFERFLNPERVSMPDIDIDFCFERRQEVI 406

Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            YV  KYG +RV QI+TFG++ A+  +RDVGR + +PY+ VD + K+IP +    +  +A
Sbjct: 407 DYVVRKYGKDRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDAIAKMIPTELNITID-KA 465

Query: 492 IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
           +  +  FR+    D  V  L+++S++LEGL RH S HAAG+VI  + + + VP+ R    
Sbjct: 466 LKMNPEFRKMYETDEQVKYLIDMSKRLEGLPRHTSMHAAGVVISQKSVDEYVPLSRAS-D 524

Query: 552 DLPVTQFNMKWIEKAGLIKFDFLGLK 577
               TQF M  +E+ GL+K D   ++
Sbjct: 525 GSITTQFTMTTLEELGLLKMDVRIVR 550


>gi|197122653|ref|YP_002134604.1| DNA polymerase III subunit alpha [Anaeromyxobacter sp. K]
 gi|254777925|sp|B4UDQ9|DNAE2_ANASK RecName: Full=Error-prone DNA polymerase
 gi|196172502|gb|ACG73475.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. K]
          Length = 1133

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 214/751 (28%), Positives = 347/751 (46%), Gaps = 54/751 (7%)

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR     G   R        G   +D  ++L  EL ++  + ++ YFL V D +++A
Sbjct: 359  MSLLRELVREGARWRYG------GEPPEDVARQLARELELVESLGYASYFLTVWDVVRFA 412

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I +  GRGS A S   Y L IT IDP+R  LLFERF++ +R   PD D+DF  +RR
Sbjct: 413  RSRGI-LCQGRGSAANSAVCYVLGITSIDPVRMGLLFERFISAERGEPPDIDVDFEHERR 471

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV  +YG +R   +    + + K+ALRDVG+AL +   QVDRL KLI        
Sbjct: 472  EEVLQYVYQRYGRDRAGMVCEVITYRGKSALRDVGKALGLSLGQVDRLAKLIGTYEDLGQ 531

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +   +    A      V   L ++++L+G  RH S H  G VI  RPL + VP+  
Sbjct: 532  VGPELLAQAGLDAA--DSERVRMTLALARELQGFPRHLSIHVGGFVITRRPLCETVPIEP 589

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV----------KVD 597
                   + Q++   + +  L+K D LGL  LT L ++L  LA+                
Sbjct: 590  AAMPGRTIVQWDKDDLAELDLLKVDLLGLGMLTALSRALALLARHRPAPASPTAVPHPDA 649

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID- 656
            L+ IP +D E Y +L    ++G+FQ+ES         ++P    D++  V++ RPGPI  
Sbjct: 650  LATIPAEDPEVYEMLGRADSIGVFQVESRAQMSLAPRLRPRNFYDLVISVAIIRPGPIQG 709

Query: 657  -NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  Y  R++GKE++   +  ++P+L  T GV ++QEQ M++A + +G++  EAD LRR
Sbjct: 710  GMIHPYLRRRDGKEQVRYPYAPLEPVLARTLGVPLFQEQAMRLAVIAAGFTPGEADELRR 769

Query: 716  AMGKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
             M  +   E++   K R ++G ++ GIS   A  IF+ L  FA YGF +SHAA++A++ Y
Sbjct: 770  VMTHRRSHEKLAAMKARLVAGMAERGISGADAEEIFKQLLGFAGYGFPESHAASFALLVY 829

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             +AW+K ++P  F  A +  +           +DA++  +++    V     +  +    
Sbjct: 830  ASAWLKRYHPAAFACALLNSQPMGFYAPHTLVEDAKRHGVEVRGVDVGCSGWESSLEGAA 889

Query: 835  I------------YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                            L A++G+       I+EA A  PF S+ +   R      +R  L
Sbjct: 890  PGRPAAPGETAVLRVGLHAVRGLPRAVGEAILEARAAGPFGSVAELVRRARL---SRAWL 946

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
              L  AGAL      R             A W          ++FA        ++ L  
Sbjct: 947  VRLAEAGALGALAPDRRD-----------AVWRSLAVEADGGDLFAGLAPP-EPEVALPA 994

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
             S  +       +    G    GHP+ + +P L    I+   E         + +A +V+
Sbjct: 995  ASAADE---VSADFATTGLSVRGHPMALVRPGLGGDRIRTARELGRLPDRAPVEVAGLVI 1051

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +Q+ +T +G  I +V+  +          P
Sbjct: 1052 VRQRPETARG--IVFVSLEDETGIANLVVMP 1080



 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/302 (22%), Positives = 109/302 (36%), Gaps = 35/302 (11%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +  +P +  L+  S +S LEGA     ++ + A     A+A+ D N L+  +    +A  
Sbjct: 1   MSHAPRYAELRCKSCFSFLEGASHPEELVGRAAELGLSALALADVNGLYGIVRAHAEAKR 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+  I+G +L +                     +VLL    EGY  L  LV+R +  + 
Sbjct: 61  QGLPLIVGAELVVA-----------GLAPGRPARLVLLAQDREGYAGLCRLVTRAHCGEG 109

Query: 125 GKQSV-RICLSWLQ------EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              +  R     +         G  GL  L  G+ G                 +   K  
Sbjct: 110 WTGAPERRERDAVAVPFEAVAAGARGLFALYPGADGD---------------AVARLKDA 154

Query: 178 FGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
           FG R  + + RHR   +  R            +P+  TN+    +       DVL  V H
Sbjct: 155 FGRRAALAVARHRVAGEEARVLAARSAGRRLGVPVAVTNDVHTHARARQVLQDVLTCVRH 214

Query: 237 STVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
            T V +  R      +  LK   E+  ++SD PE L    +IA +C F ++      P  
Sbjct: 215 GTTVDRAGRRLFPNAERTLKGPEELARLWSDFPEGLAAAADIADQCRFRMEAIRGEHPLP 274

Query: 296 IE 297
             
Sbjct: 275 PV 276


>gi|146320384|ref|YP_001200095.1| DNA polymerase III, alpha subunit [Streptococcus suis 98HAH33]
 gi|145691190|gb|ABP91695.1| DNA polymerase III, alpha subunit [Streptococcus suis 98HAH33]
          Length = 822

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 244/723 (33%), Positives = 392/723 (54%), Gaps = 34/723 (4%)

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
              AV  L  R  QG   KG     Y++RL+ EL++I +M+F  YFLIV D +++ +    
Sbjct: 24   RPAVEELYERSYQGLEEKGLTNSLYKERLEKELSIIHQMEFDDYFLIVWDLLRFGRSQGY 83

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R SMPD DID     R + IR
Sbjct: 84   YMGMGRGSAVGSLVAYALNITGIDPVKHNLLFERFLNAERYSMPDIDIDIPDIHRADFIR 143

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YV+++YG    AQI+T+ +  AK A+RDV +    P  ++  + K I    +      A 
Sbjct: 144  YVRDRYGSTHAAQIVTYSTFGAKQAIRDVFKRFGTPEYELSNITKKISFRDSLT---SAY 200

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
              ++ FR+   +     +   I+Q++EG  R  S HAAGIV+ D  L+  +P+   +  D
Sbjct: 201  QRNAAFRQIINSKIEYQKAFAIAQQIEGQPRQTSIHAAGIVMSDEELTDTIPL--KIGDD 258

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHL 611
            + VTQ++   +E  GL+K DFLGL+ LT +QK  + + +R  + +D++ I  +D +T  L
Sbjct: 259  MLVTQYDAHAVEANGLLKMDFLGLRNLTFVQKMAEGVRERYQQEIDIAKIDLEDKKTLEL 318

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                 T GIFQ E  G    L  ++P   EDI+A  SL RPG  D    +  RK+G+E +
Sbjct: 319  FAAGRTKGIFQFEQPGAISLLRRVKPGRFEDIVATTSLNRPGASDYSDNFVKRKHGQETV 378

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              + P I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM   +  
Sbjct: 379  DLLDPTIAPILQPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNAQEMQAMEAE 438

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            F+ GA KNG ++  A  IF ++AKFA YGFN+SHA AY+ +++Q A+ K+HY   F    
Sbjct: 439  FLQGALKNGHAEENAREIFGMMAKFAGYGFNRSHAYAYSALAFQMAYFKSHYTDVFFDVM 498

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            +            + +DA QF+ ++   ++N      K   +++Y  L  +KG+    A 
Sbjct: 499  LNHSS------SAYIEDAMQFDFEVARLTINNIPYHDKFDKSKVYLGLKTLKGLPKDLAL 552

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
             I++     P+ S+EDF  R+      + +L  L+  G  D F  +R +++++LDN+  +
Sbjct: 553  WILDHR---PYKSVEDFILRLPDNFKKKDLLIPLIQIGLFDDFDANRKKIIENLDNLFVF 609

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            A+ +           FA E  +++D          + S +F  EQ +LG   S HPL   
Sbjct: 610  AEAI--------GTFFAEESYSWTD------VEDYSDSEKFMLEQELLGVGISPHPL--- 652

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEAN 1030
               + +   + + +      GN   +   + + +  +T+K G ++ ++  ++  +  +  
Sbjct: 653  -VNICRESKRSFTDLADLAVGNRATVLVQIQAIRLIRTKKTGEQMAFLRVTDTKRTLDVT 711

Query: 1031 FFP 1033
             FP
Sbjct: 712  LFP 714


>gi|229916404|ref|YP_002885050.1| DNA polymerase III, subunit alpha [Exiguobacterium sp. AT1b]
 gi|229467833|gb|ACQ69605.1| DNA polymerase III, alpha subunit [Exiguobacterium sp. AT1b]
          Length = 1055

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 295/1024 (28%), Positives = 493/1024 (48%), Gaps = 97/1024 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +HL V ++YSLL+  + L   + ++      ++AI D +  +    F        ++P+I
Sbjct: 2    IHLNVRTAYSLLQSTIRLEQYVLQMTERGSRSVAIAD-DAFYGVPTFLSYCQRYEVKPLI 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +                    S+++  S     +    ++         +    +
Sbjct: 61   GLRTVL-------------RLDGLDVSVIVYSSNETELKEQYRII----QAGGIEGRTTM 103

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             L  L E            +S P+ R   ++        LL+F  +  ++L++ L   + 
Sbjct: 104  PLVVLPENWK---------ASDPVHRRRLYHQ-------LLSF--VDEEKLWLGLPAPQT 145

Query: 192  YDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             ++     Q+  +     + L+    + ++  ED E    + A+    V+S +D      
Sbjct: 146  TEQVQVLKQLRLMREELAVQLIPAPETRYMRPEDVEGFRAISAIREGEVMSNED--VRQK 203

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              +++  SEM   F         T E+     F   +    LPR  E    ++  + + +
Sbjct: 204  GLHVRLPSEMNDWF--------TTEELTELDRFEALIRLEHLPR-AEGAIPEL-PDADQK 253

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L+         RL    + K    + Y +R  FEL VIA+  FS YFLIV D +++A+++
Sbjct: 254  LKRLV----GERLKSMELLK----EPYIERAKFELEVIAKTGFSSYFLIVEDIVRFARES 305

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I VGPGRGS AGS+ ++AL IT++DP+R+ LLFERFLNP+R+SMPD D+DF  +RR+EV
Sbjct: 306  GIEVGPGRGSAAGSLVSFALHITEVDPVRYGLLFERFLNPERVSMPDIDLDFEDERREEV 365

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV +KYGH   AQI T  +  AKAA+RDV RAL M   +     K +         L 
Sbjct: 366  VSYVLSKYGHTHAAQIGTLATFGAKAAMRDVARALGMTLEEGQAASKQV-----KAGGLD 420

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
             +    +  +         +LL I+++LEGL R +S HAAG+V+  +P+ ++ P+  ++ 
Sbjct: 421  ELMSSPKQMKWFAGSQKRQQLLRIAKQLEGLPRQSSVHAAGVVLSRQPIEEVTPLQPELE 480

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
                VTQ+NMK +E+ GL+K D LGL+ L+ L+K  D + +      L  IP +D  TY 
Sbjct: 481  EH--VTQYNMKDLEEVGLLKIDLLGLRNLSRLRKMEDLIRESDALFSLKTIPLNDARTYR 538

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL    T GIFQ ES+GM+QAL  ++P   EDI+  +SLYRPGP+  I  Y  RK+G   
Sbjct: 539  LLARGETDGIFQFESTGMKQALRQVKPTEFEDIVVTMSLYRPGPMQFIETYAKRKHG-MP 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
               +HP ++ ++K T GV++YQEQVM++ + L GYS +EAD++RRA+ KK    + +++E
Sbjct: 598  YQPVHPDVEDVMKPTYGVLVYQEQVMRLLRKLGGYSYAEADLVRRAIAKKDTGTIARERE 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            RF+  A      + +   IF  + KFA YGFN+SHA AY++ISY+ A++K H+P  F   
Sbjct: 658  RFLQQAKA--GDQDVLAQIFSWIEKFAGYGFNRSHAVAYSLISYRLAYVKAHFPRVFHVV 715

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
            +        +K  +  +  R+  I + PP V     D  +    +   L A++G+     
Sbjct: 716  T-------SDKTTELVRLLRKDQIPVYPPDVLHGHADATLEGPGVRLGLKAVQGLTKRDV 768

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY-SRMQLLQSLDNIQ 909
              ++E   +     +      ++ K  ++  L  L+ AGALD   +  R +  ++++ ++
Sbjct: 769  DRLIE--LNGQLKDVRTLQETMEWKNKDQLKLRRLLGAGALDRMYHGDRTRAFEAVERLR 826

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            + A        ++  ++     G    K+    +S E        E+  LG +    PL 
Sbjct: 827  EEAGTHF--LPDELSSL-----GLKQKKVKEPNWSEE--------EREALGTWVVHSPLT 871

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 L  +GI+        + G N  L   V   +   T+K  R+G +   +   + E 
Sbjct: 872  ----ALPDIGIEP-STIEEVMNGTNGYLVVYVDDVRTFMTKKQERMGVLMVDDGMTQDEV 926

Query: 1030 NFFP 1033
              FP
Sbjct: 927  VVFP 930


>gi|331703662|ref|YP_004400349.1| DNA polymerase III subunit alpha [Mycoplasma mycoides subsp. capri LC
            str. 95010]
 gi|328802217|emb|CBW54371.1| DNA polymerase III alpha subunit [Mycoplasma mycoides subsp. capri LC
            str. 95010]
          Length = 987

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 279/1023 (27%), Positives = 475/1023 (46%), Gaps = 87/1023 (8%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L + + Y  LE  ++++  ++ I  ++      ++T+ ++   EF +KA    I+PIIG 
Sbjct: 7    LTIKNQYDFLESLITIDQYIEFIKKNKLSYAFYSETHTMYGVAEFFKKATDNNIKPIIGL 66

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                               F     +++     +GYQ L  + S  +L D          
Sbjct: 67   T----------------IEFEDSTKLIIYAKNKKGYQILNFVSS--FLNDGFNHYDYEIK 108

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
             ++ E+               +      N        +      F D   +NL       
Sbjct: 109  EYILELVNN-----------NVVVVGLINDLDFKSYLINKLNDDFYDVKELNLYF----- 152

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                                 N   +L   D + + +L A+  +  + Q        +++
Sbjct: 153  ---------------------NQISYLDINDQKTYSILNAIKTNKTIEQIQNIN---NYF 188

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA-PILPRFIEKECDDIQKEEENELR 312
              +   ++  +S     LEN  ++    +  +  +      + + K  +         LR
Sbjct: 189  YPDIDYLIKNYS-----LENIKKVINEINSKVDFNLFDSNEKHLVKYKNINNLSSYEYLR 243

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
               +  L+    Q  I      + Y  RL++EL VI +M FS YFLIV+D++ +AKKN+I
Sbjct: 244  QVCLLSLKK--YQQKIKPNLDLKLYINRLNYELEVIKQMGFSDYFLIVSDYVNFAKKNDI 301

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS+ +Y L ITDIDPL + LLFERFLNPDR ++PD D+DF  +RR+EV+ 
Sbjct: 302  LVGPGRGSAAGSLISYLLRITDIDPLEYDLLFERFLNPDRSNLPDIDLDFQDNRREEVLE 361

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            Y+  KYG   V  I T+ ++  K A RDV R   +    V+++ K++  D          
Sbjct: 362  YLFEKYGKYHVGMITTYQTIGYKMAWRDVCRVFNIDLLIVNKISKVL--DQYTNSDFLEF 419

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
              +++       +     +     K+ GL R  STHAAGIV+ D  L +LVP+ +   + 
Sbjct: 420  IKENKLLNDYFQNDLFKEIFITMHKIVGLPRQTSTHAAGIVLTDCDLRELVPI-KIGFNG 478

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHL 611
            +  TQF+M +++  GLIK D LGL+ LT +Q+    +   + +K+ L+ I  +D + + L
Sbjct: 479  INQTQFDMNYLDALGLIKMDILGLRNLTTIQEIKHLIYLNQNLKISLNKIDLNDRKAFEL 538

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            L  K T GIFQLES GM   +  MQ D IE I    +LYRPGP + I +Y   K    K 
Sbjct: 539  LKNKQTSGIFQLESKGMTDLISKMQVDSIEQISIASALYRPGPQEMIPIYLENKK-TNKF 597

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              I   +  +LK T G+I+YQEQVMQ+   ++ +S ++AD++RRAM KK  + M   K  
Sbjct: 598  KIIDKSVYEILKPTYGIIVYQEQVMQMLNKVANFSYAKADIIRRAMSKKNNKVMQSMKLE 657

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            FI+ A KN  S   A  I+  + KF++YGFNKSH+ +Y+ ISY  A+ K H+  EF  + 
Sbjct: 658  FINSAIKNNFSYNKANLIWNWIEKFSNYGFNKSHSISYSYISYWLAYFKAHFTTEFYTSL 717

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            +   + N  K +++ ++   + I++  PSV     ++++ + +IY  L  IK +G    +
Sbjct: 718  LDQNIGNEIKTQQYIKELYDYKIKVNKPSVINSNFNYQIINKQIYMPLTCIKSIGYEVVK 777

Query: 852  HI--MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
             I   ++  +  +  + +F   +  +K+N  VL++L+ AGALD F Y++  ++++LD + 
Sbjct: 778  KINLAKSENENMYLDIHNFILAMIKQKINVNVLQTLIKAGALDIFNYNKKTMIENLDLLI 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
              A   ++                  +KI L  +      +    E+ + GF+   +P+ 
Sbjct: 838  SQANAYKQVNNI-----------LDDEKINLIIYDEYEDEILASFEKELYGFFIDQNPIL 886

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              K       +    +           +   ++  ++ K +  +++ +VT  +   E E 
Sbjct: 887  KLKT--NNFNL-NLIDISKLEYNKVQVVLGYILKIKEIKDKNNNKMAFVTVFDNTSELEL 943

Query: 1030 NFF 1032
              F
Sbjct: 944  TIF 946


>gi|26553651|ref|NP_757585.1| DNA polymerase III DnaE [Mycoplasma penetrans HF-2]
 gi|26453657|dbj|BAC43989.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
          Length = 990

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 271/942 (28%), Positives = 457/942 (48%), Gaps = 98/942 (10%)

Query: 30  NNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQG 89
           + I++    +++  + +TDT NL+  +EF  K     + P+IG  ++  + +N K     
Sbjct: 32  DQIIEFAINEEKKYVCLTDT-NLYGVIEFYLKCKDKNLMPVIGLSINSQLIENTK----- 85

Query: 90  KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
                     VL     +GY  L+++ S +   +                          
Sbjct: 86  -------YDFVLFAKNKKGYLNLVKISSFLMTNNDFNY---------------------- 116

Query: 150 GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHEL 209
                                     + +   L++ + ++  +D   +S+V  +    + 
Sbjct: 117 --------------------------ENYLSDLFI-VDKNGTFDFKTDSKVYSINPK-DK 148

Query: 210 PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
             +A N + + ++ D    + L A+ ++  VS  D      D  L   SE VS+F+D+  
Sbjct: 149 NAIAFNEARYFNKNDKRVFNALQAIKNNRTVSI-DELEEGQDLSLLTESESVSLFNDVQ- 206

Query: 270 ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            +EN     +  +  ++     + ++  +        ++  L    + GL  ++    I 
Sbjct: 207 -IENLNNEIKEVNLEIEFEKNNIIKYPNESN----LSDKALLHKFCMDGLNEKIFNKEID 261

Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                  Y +R+++EL +I  M F+ YFL+V DFI  AK   I +GPGRGS AGS+ AY 
Sbjct: 262 SNSK-DTYIERMEYELQIIDDMGFNDYFLVVQDFINDAKNKGILIGPGRGSAAGSLIAYL 320

Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
           L IT+ID ++++LLFERFLNP R++MPD DID    RRDEV+ Y+  KYG++ VA IITF
Sbjct: 321 LGITEIDSIKYNLLFERFLNPGRITMPDIDIDIMDIRRDEVVEYLFEKYGYDHVAHIITF 380

Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
             ++AK ALRD+GR L +    ++ +CK I  D      L    +  + ++A  +     
Sbjct: 381 QKIKAKMALRDIGRILNIDLKIINSICKSITKDL--EEDLANAINTKKLQDAYKS---YK 435

Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            L +++  + G  R    HAAG+V+  + L+ +VP+   V  +   TQ++M ++E  GLI
Sbjct: 436 DLFDLAIGIMGCPRQVGIHAAGVVLSQKVLTDIVPIQTSVNGE-ITTQYSMDYLEDLGLI 494

Query: 570 KFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
           K D LGL  L+ +      +     ++++L+ +  +D   +  L    TLGIFQLES GM
Sbjct: 495 KMDLLGLTNLSTINHVCKLIKMNHGIEINLAKLNLEDQNVFLDLQQGHTLGIFQLESEGM 554

Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
              ++ ++P CIEDI    +L+RPGP+ NI  +  R+ G EK+  I      +L+ T G+
Sbjct: 555 TSVVKQVKPVCIEDISICSALFRPGPMQNIKPFVRRREGFEKVEYIDVKNKDILEPTHGI 614

Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
           I+YQEQV+ + + ++ +SLSEAD+ RR + KK   E+D  K+ F   A KN  ++     
Sbjct: 615 IVYQEQVINLVRRIANFSLSEADMFRRIISKKKGHELDNFKKMFFENALKNDYTQDRLEQ 674

Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
           I+  +  FADYGFN SH+ AY++I Y  A++K +YP+EF+   MT   ++  KI  +  +
Sbjct: 675 IYNYIYTFADYGFNHSHSVAYSLIGYWMAYLKHYYPIEFMIILMTFSENDKNKIDLYVNE 734

Query: 809 ARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
            ++ NI I  P +N     F +   N I + L +IKG+G  T++ I+E   +       D
Sbjct: 735 CKRLNINIRKPDINISNKSFGLYKKNTILFGLNSIKGIGVETSKKIIEIRTNNKDKKFSD 794

Query: 868 FCSRVDSKKLNR---RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
           FC  +     N+     LE+L+ AG  D F  S+  +L++L  I   A  ++        
Sbjct: 795 FCEAIKKLSSNKVGISTLETLINAGTFDGFKLSKKYMLENLPIIVDAASNLK-------- 846

Query: 925 NIFAHEKGTFSDKITLEKFSVENSSVRFE---NEQRVLGFYF 963
                + G+F  +  L     E ++ +      E  +LG   
Sbjct: 847 -----DDGSFLFEPRLIDVEGETNAEKEAFNKKEIELLGLDL 883


>gi|42561210|ref|NP_975661.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
            SC str. PG1]
 gi|42492708|emb|CAE77303.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
            SC str. PG1]
 gi|301320544|gb|ADK69187.1| putative DNA polymerase III DnaE [Mycoplasma mycoides subsp. mycoides
            SC str. Gladysdale]
          Length = 987

 Score =  606 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 285/1023 (27%), Positives = 489/1023 (47%), Gaps = 87/1023 (8%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L + + Y  LE  ++++  ++ I  ++      ++T+ ++   EF +KA    I+PIIG 
Sbjct: 7    LTIKNQYDFLESLITIDQYIEFIKKNKLSYAFYSETHTMYGVAEFFKKATDNNIKPIIGL 66

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                               F     +++     +GYQ L  + S  +L D          
Sbjct: 67   T----------------IEFEDSTKLIIYAKNKKGYQILNFVSS--FLNDGFNHYDYEIK 108

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
             ++ E+    ++++     G I                L FK    D+L          D
Sbjct: 109  EYILELVNNNVVVI-----GLISD--------------LDFKTHLIDKL---------ND 140

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
             + + + + L +         N   +L   D + +++L A+  +  +   D+ + T +++
Sbjct: 141  DFYDVKELNLYF---------NQISYLDINDQKTYNILNAIKTNKTI---DQIQNTNNYF 188

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA-PILPRFIEKECDDIQKEEENELR 312
              +   ++  +S     LEN  ++    +F +  +      + + K  +         LR
Sbjct: 189  YPDNDYLIKNYS-----LENIKKVINEINFKVDFNLFDSNKKHLVKYKNINNLSSFEYLR 243

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
               +  L+    Q  I      + Y  RL++EL VI +M FS YFLIV+D++ +AKKN+I
Sbjct: 244  QVCLLSLKK--YQQKIKPNLDLKLYISRLNYELEVIKQMGFSDYFLIVSDYVNFAKKNDI 301

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS+ +Y L ITDIDPL + LLFERFLNPDR ++PD D+DF  +RR+EV+ 
Sbjct: 302  LVGPGRGSAAGSLISYLLRITDIDPLEYDLLFERFLNPDRSNLPDIDLDFQDNRREEVLE 361

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            Y+  KYG   V  I T+ ++  K A RDV R   +    V+++ K++  D          
Sbjct: 362  YLFEKYGKYHVGMITTYQTIGYKMAWRDVCRVFNIDLLIVNKISKVL--DQYTNSDFLEF 419

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
              +++       +     +     K+ GL R  STHAAGIV+ D  L +LVP+ +   + 
Sbjct: 420  IKENKLLNDYFQNNVFKEIFITMHKIVGLPRQTSTHAAGIVLTDCDLRELVPI-KIGFNG 478

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHL 611
            +  TQF+M +++  GLIK D LGL+ LT +Q+    +   + +K+ L+ I  +D + + L
Sbjct: 479  INQTQFDMNYLDDLGLIKMDILGLRNLTTIQEIKHLIYLNQNLKISLNKIDLNDKKAFEL 538

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            L  K T GIFQLES GM   +  MQ D IE I    +LYRPGP + I +Y   K    K 
Sbjct: 539  LKNKQTSGIFQLESKGMTDLISKMQVDSIELISIASALYRPGPQEMISIYLENKK-TNKF 597

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              I   +  +LK T G+IIYQEQVMQ+   +  +S ++AD++RRAM KK  + M   K  
Sbjct: 598  KIIDQSVFEILKPTYGIIIYQEQVMQMLNKVVNFSYAKADIIRRAMSKKNNKVMQSMKLE 657

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            FI+ A KN  S   A  I+  + KF++YGFNKSH+ +Y+ ISY  A+ K H+  EF  + 
Sbjct: 658  FINSAVKNNFSYNKANLIWNWIEKFSNYGFNKSHSISYSYISYWLAYFKAHFTTEFYTSL 717

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            +   + N  K +++ ++   + I++  PSV     ++++ + +IY  L  IK +G    +
Sbjct: 718  LDQNIGNEIKTQQYIKELYDYKIKVNKPSVINANFNYQIINKQIYMPLTCIKSIGYEVVK 777

Query: 852  HI--MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
             I   ++  +  +  + +F   +  +K++  VL++L+ AGALD F Y++  ++++LD + 
Sbjct: 778  KINLAKSENENMYLDIHNFILAMIKQKISVNVLQTLIKAGALDIFNYNKKTMIENLDLLI 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
              A   ++                  +KI L  +      +    E+ + GF+   +P+ 
Sbjct: 838  SQANAYKQVNNI-----------LDDEKINLIIYDEYEDEILASFEKELYGFFIEQNPIL 886

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              K            +           +   ++  ++ K +  +++ +VT  +   E E 
Sbjct: 887  KLKT---SNFDLNLIDISKLEYNKVQVILGYILKIKEIKDKNNNKMAFVTIFDNTSELEL 943

Query: 1030 NFF 1032
              F
Sbjct: 944  TIF 946


>gi|47459322|ref|YP_016184.1| DNA polymerase III DnaE [Mycoplasma mobile 163K]
 gi|47458652|gb|AAT27973.1| DNA polymerase III alpha subunit [Mycoplasma mobile 163K]
          Length = 982

 Score =  606 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 297/1040 (28%), Positives = 487/1040 (46%), Gaps = 128/1040 (12%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            ++L  +S YS+LE A+SL +++     +Q   +++TD N +F   EF +      I+PII
Sbjct: 5    INLHTNSEYSILESAISLEHLISYAKHNQLKYLSLTDHNTMFGVPEFYELCKKNSIKPII 64

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
                             G         +VL+    +GY  LI+L S+  L +        
Sbjct: 65   -----------------GLDLDVENYRLVLIAKNYQGYLELIKLSSKKMLNENV------ 101

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L  I +  L ++   + G   +                 + +     Y+N      
Sbjct: 102  ---ELNHIDSTNLFIIDHPTKGSFSKFG---------------QSIEIKNYYIN-----S 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D   ++             + T     L +ED E       +A++             +
Sbjct: 139  LDPKHKNA------------IFTKEIRILEKEDNEILKTFNQIANNE------------E 174

Query: 252  HYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQ-VHAPILPRFIEKECDDIQKEEEN 309
                       I   LP+  L N   I    +      +   LP++      D++ +   
Sbjct: 175  EEFTLPE--YEINEKLPQNVLNNIFYIIENSNVEFPKEYQNYLPQY------DLKIDSSI 226

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L+         +     I K    Q+ ++R+++ELNVI  +KF+ YFLI+ D +++AK+
Sbjct: 227  VLKEIVYKNFLEK-----IKKFEKYQNVKERINYELNVINSLKFADYFLIIYDIVKFAKE 281

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I VGPGRGS AGS+ +Y L IT I+PL++ LLFERFLNP+R++MPD DIDF  DRRDE
Sbjct: 282  NKISVGPGRGSAAGSIVSYLLNITSINPLKYDLLFERFLNPERITMPDIDIDFQDDRRDE 341

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            ++ YV  KYGH++VA I TF    AK ALRDVGR L      ++ + KL+        +L
Sbjct: 342  IVEYVTKKYGHQKVALITTFQRFGAKMALRDVGRNLNFTQVDMNNISKLV----KLNQNL 397

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                  ++F+   LA P  + L + ++K+E   R   THAAGI+I ++ L +++P+ +  
Sbjct: 398  DEAYRTTKFKAQMLASPKHELLYKNARKIENFPRQVGTHAAGIIISNKNLIEIIPIMQSS 457

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----------RGVKVDLS 599
             S++  TQ++M ++E   L+K D LGLK L+ ++     + +               +  
Sbjct: 458  VSNIQ-TQYSMNYLENFSLLKIDLLGLKALSTIKLIEQKIREAYKIKYNFSNEDEYTEQL 516

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
                D  + + LL+   T G+FQLES GM Q ++ ++     DI+ ++SLYRPGP+  I 
Sbjct: 517  KKDLDPKKAFQLLSDGNTAGVFQLESPGMIQTIKKVKISKFSDIVDVISLYRPGPMQYIQ 576

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y + KN   KI  +  L D ++ +T G+IIYQEQ+++I Q  +G S ++AD+LRRA+ K
Sbjct: 577  EYIDNKNDASKIKHVEKLYDEIVSKTHGIIIYQEQILEIVQKYAGLSYAKADILRRAISK 636

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EE++K K+ FIS + ++G S+ +A  IF  +  FA YGFNKSHA +YA  ++  A +
Sbjct: 637  KNSEEIEKFKDLFISSSIQHGQSEKVANEIFSKIENFAQYGFNKSHAVSYATTTFYFAQL 696

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K ++P+EF    ++   D++E I K+  +A+     +  P +N           +I+  L
Sbjct: 697  KANFPLEFYTVLISSS-DSLETINKYVIEAKNNLYTVESPDINVSDFKAFSDFEKIFLPL 755

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
              IKG+G    + I++    +  + S     +R++   + + +LE L+ + AL  FG S 
Sbjct: 756  IMIKGLGKVAIQKILDERNQNGKYSSFFTLVARLNFVGITKGILEKLILSNALRNFG-SM 814

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL-EKFSVENSSVRF----E 953
              LL +L     YA+ V          +F  E G       L ++ ++           +
Sbjct: 815  QTLLANLTQAYAYAETV----------LFKDENGIEKINFGLSKEHTIVEDKRDLSFEAK 864

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KG 1012
            NE   LG  F+  P       L+          +  I  N   +A +V      +T+ K 
Sbjct: 865  NESEYLGMVFNAFP------TLKYETKNTLNNLILNIEYN---VAIIVDKIFISRTKSKN 915

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
                 + FS+  K  E   F
Sbjct: 916  KEYIKLIFSDRTKVVETAIF 935


>gi|256384031|gb|ACU78601.1| DNA polymerase III, alpha subunit subfamily, putative [Mycoplasma
            mycoides subsp. capri str. GM12]
 gi|256384863|gb|ACU79432.1| DNA polymerase III, alpha subunit subfamily, putative [Mycoplasma
            mycoides subsp. capri str. GM12]
 gi|296455849|gb|ADH22084.1| DNA polymerase III, alpha subunit subfamily, putative [synthetic
            Mycoplasma mycoides JCVI-syn1.0]
          Length = 987

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 278/1023 (27%), Positives = 477/1023 (46%), Gaps = 87/1023 (8%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L + + Y  LE  ++++  ++ I  ++      ++T+ ++   EF +KA    I+PIIG 
Sbjct: 7    LTIKNQYDFLESLITIDQYIEFIKKNKLNYAFYSETHTMYGVAEFFKKATDNNIKPIIGL 66

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                               F     +++     +GYQ L  + S  +L D          
Sbjct: 67   T----------------IEFEDSTKLIIYAKNKKGYQILNFVSS--FLNDGFNHYDYEIK 108

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
             ++ E+               +      N        +      F D   +NL       
Sbjct: 109  EYILELVNN-----------NVVVVGLINDLDFKSYLINKLNNDFYDVKELNLYF----- 152

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                                 N   +L   D + +++L A+  +  ++Q        +++
Sbjct: 153  ---------------------NQISYLDINDQKTYNILNAIKTNKTINQIQNIN---NYF 188

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA-PILPRFIEKECDDIQKEEENELR 312
              +   ++  +S     LEN  ++    +  +  +      + + K  +         LR
Sbjct: 189  YPDIDYLIKNYS-----LENIKKVISEINSKVDFNLFDSNQKHLVKYKNINNLSSYEYLR 243

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
               +  L+    Q  I      + Y  RL++EL +I +M FS YFLIV+D++ +AKKN+I
Sbjct: 244  QVCLLSLKK--YQQKIKPNLDLKLYINRLNYELEIIKQMGFSDYFLIVSDYVNFAKKNDI 301

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS+ +Y L ITDIDPL + LLFERFLNPDR ++PD D+DF  +RR+EV+ 
Sbjct: 302  LVGPGRGSAAGSLISYLLRITDIDPLEYDLLFERFLNPDRSNLPDIDLDFQDNRREEVLE 361

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            Y+  KYG   V  I T+ ++  K A RDV R   +    V+++ K++  D          
Sbjct: 362  YLFEKYGKYHVGMITTYQTIGYKMAWRDVCRVFNIDLLIVNKISKVL--DQYTNSDFLEF 419

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
              +++       +     +     K+ GL R  STHAAGIV+ D  L +LVP+ +   + 
Sbjct: 420  IKENKLLNDYFQNDLFKEIFITMHKIIGLPRQTSTHAAGIVLTDCDLRELVPI-KIGFNG 478

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHL 611
            +  TQF+M +++  GLIK D LGL+ LT +Q+    +   + +K+ L+ I  +D + + L
Sbjct: 479  INQTQFDMNYLDALGLIKMDILGLRNLTTIQEIKHLIYLNQNLKISLNKIDLNDKKAFEL 538

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            L  K T GIFQLES GM   +  MQ D IE I    +LYRPGP + I +Y   K    K 
Sbjct: 539  LKNKQTSGIFQLESKGMSDLISKMQVDSIEQISIASALYRPGPQEMIPIYLENKK-TNKF 597

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              I   +  +LK T G+I+YQEQVMQ+   ++ +S ++AD++RRAM KK  + M   K  
Sbjct: 598  KIIDKSVYEILKPTYGIIVYQEQVMQMLNKVANFSYAKADIIRRAMSKKNNKVMQSMKLE 657

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            FI+ A KN  S   A  I+  + KF++YGFNKSH+ +Y+ ISY  A+ K H+  EF  + 
Sbjct: 658  FINSAIKNNFSYNKANLIWNWIEKFSNYGFNKSHSISYSYISYWLAYFKAHFTTEFYTSL 717

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            +   + N  K +++ ++   + I++  PSV     ++++ + +IY  L  IK +G    +
Sbjct: 718  LDQNIGNEIKTQQYIKELYDYKIKVNKPSVINSNFNYQIINKQIYMPLTCIKSIGYEVVK 777

Query: 852  HI--MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
             I   ++  +  +  + +F   +  +K+N  VL++L+ AGALD F Y++  ++++LD + 
Sbjct: 778  KINLAKSENENMYLDIHNFILAMIKQKINVNVLQTLIKAGALDIFNYNKKTMIENLDLLI 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
              A   ++                  +KI L  +      +    E+ + GF+   +P+ 
Sbjct: 838  SQANAYKQVNNI-----------LDDEKINLIIYDEYEDEILASFEKELYGFFIDQNPIL 886

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              K       +    +           +   ++  ++ K +  +++ +VT  +   E E 
Sbjct: 887  KLKT--NNFNL-NLIDISKLEYNKVQVILGYILKIKEIKDKNNNKMAFVTVFDNTSELEL 943

Query: 1030 NFF 1032
              F
Sbjct: 944  TIF 946


>gi|206599772|ref|YP_002241961.1| gp68 [Mycobacterium phage Gumball]
 gi|206282986|gb|ACI06440.1| gp66 [Mycobacterium phage Gumball]
          Length = 1100

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 274/955 (28%), Positives = 436/955 (45%), Gaps = 69/955 (7%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           K   FV L  HS++S  +G   +   + ++A     A+A+T+  NL S  +  +     G
Sbjct: 33  KPMKFVSLHTHSTFSYGDGYGPVKEHVQRVAELGMGALALTEHGNLSSHAQLEKACNEIG 92

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I+PI GC+L +      +  +Q            +L     G Q L  +V++ +      
Sbjct: 93  IKPIFGCELYVAPPGENRKCHQ-----------TVLAMNEVGLQNLNRIVTKSW--KNFY 139

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-------------QVAEKRLLT 173
           +        L+E   EGLI+L+G +   +        S               A   +  
Sbjct: 140 RWPTTSWKMLEE-HNEGLIVLSGCADSVLSCTLLGGKSYGDKRLTASKRDIARAAGLIGR 198

Query: 174 FKKLFGDRLYVNLQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
           ++++FGDR Y+  QR  G DR       + +L+      LV T +  +    D +   +L
Sbjct: 199 YQEVFGDRYYLEAQRFPGLDRTCALNPLLARLSELTGARLVGTADVHYPRGSDNDMQKIL 258

Query: 232 MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP----------EALENTVEIARRC 281
            A    + V +        D  L        I+ DL           EA+  +  IA RC
Sbjct: 259 HAAHRGSTV-EATEASWEYDILLTYPESDREIYMDLVGTGLTKAQAREAVLESGRIAERC 317

Query: 282 SFILQVHAPILPRFIEKECDDIQ-KEEENELRNKAV-AGLEVRLAQGAIAKGYHAQDYRQ 339
           + IL  + PI      KE D  Q     NEL  K +  G   R+A     +  + Q Y+ 
Sbjct: 318 NVILPKNQPIRFPKPTKEVDGTQVPMSANELIRKWLNEGWHFRMATNPNMRK-NRQAYKA 376

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
           R++ EL ++    F  YFL+++D ++WAK + IPVGP RGS A S+  Y L IT++DP+ 
Sbjct: 377 RVEHELGMMEEKDFLDYFLVLSDAVRWAKDHKIPVGPARGSAAASLVCYLLRITEVDPML 436

Query: 400 F-SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
           F  +LFERF++P R  +PD D+DF  DRR EV RY++ KYG +RV  I  F   + K ++
Sbjct: 437 FPHMLFERFIDPTRTELPDVDLDFSDDRRIEVKRYLEEKYGADRVGNIGNFTRYRGKNSI 496

Query: 459 RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ-- 516
            DV R   +P  + + +  LI         +    +D+ F     A   ++R  E++   
Sbjct: 497 DDVARVYNIPVWETEIVKNLIIERSGGDSRISDSLEDT-FNMFPKAAAVLERHPELANAI 555

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFL 574
           +LEG YR    HAAGIVI + P++    +Y    +     V  ++ K  E  G++K DFL
Sbjct: 556 RLEGNYRGMGVHAAGIVISNTPITDTCAVYERESAGKTTQVIAYDKKDGEYVGMLKADFL 615

Query: 575 GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
           GL T+ ++  +LD +       DL  IP DD +           GIFQ E    R     
Sbjct: 616 GLSTMGMIGIALDMIGMDLE--DLYRIPLDDQKVLEAFRRGDVTGIFQFEGRATRIVCSD 673

Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           + PD  + +  + +L RPGP+ + +   Y   K+G++     HP++D +   T G ++YQ
Sbjct: 674 VVPDHFQHLADINALSRPGPLFSGMTAAYCEVKHGRKTPERYHPILDNLTDWTYGQVVYQ 733

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG--ASKNGISKTIAVNIF 750
           EQV+   + L G+ +SE   +R+ + +K+ E   + K +         +G +   A  I+
Sbjct: 734 EQVLSTIRELGGFPMSEVHSIRKIISQKLGEAQFEAKYKMFEDNACQNHGCTPEQAQKIW 793

Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
             LA  A Y FN +H  +Y++++Y   W+K H+P  F AA +     N EK+ K  +DA 
Sbjct: 794 RFLATSATYSFNIAHCISYSMLAYWQMWIKQHHPTAFYAAQLRKV--NDEKLYKLMRDAV 851

Query: 811 QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFD------ 863
           + NI I+PPS+N     +       +      I GVG  T+  I+E    K         
Sbjct: 852 RHNISILPPSINESMASWSAPMEGVVRAGFLQIPGVGPKTSEVIVEWRNQKIRKGQKAIA 911

Query: 864 -SLEDFCS--RVDSKKLNRRVLESLV-FAGALDCFGYSRMQ-LLQSLDNIQKYAQ 913
            S  D      ++ K +  + +E +V F  A D FG +R+Q L +SL  I K   
Sbjct: 912 ASAPDLMWSDLLEVKGIGPKSIEKIVAFCEAEDPFGLNRVQDLFKSLRRIIKPGN 966


>gi|206599684|ref|YP_002241563.1| gp65 [Mycobacterium phage Butterscotch]
 gi|206599860|ref|YP_002241480.1| gp66 [Mycobacterium phage Troll4]
 gi|206282866|gb|ACI06353.1| gp65 [Mycobacterium phage Butterscotch]
 gi|206283102|gb|ACI06527.1| gp66 [Mycobacterium phage Troll4]
          Length = 1100

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 274/955 (28%), Positives = 436/955 (45%), Gaps = 69/955 (7%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           K   FV L  HS++S  +G   +   + ++A     A+A+T+  NL S  +  +     G
Sbjct: 33  KPMKFVSLHTHSTFSYGDGYGPVKEHVQRVAELGMGALALTEHGNLSSHAQLEKACNEIG 92

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I+PI GC+L +      +  +Q            +L     G Q L  +V++ +      
Sbjct: 93  IKPIFGCELYVAPPGENRKCHQ-----------TVLAMNEVGLQNLNRIVTKSW--KNFY 139

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-------------QVAEKRLLT 173
           +        L+E   EGLI+L+G +   +        S               A   +  
Sbjct: 140 RWPTTSWKMLEE-HNEGLIVLSGCADSVLSCTLLGGKSYGDKRLTASKRDIARAAGLIGR 198

Query: 174 FKKLFGDRLYVNLQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
           ++++FGDR Y+  QR  G DR       + +L+      LV T +  +    D E   +L
Sbjct: 199 YQEVFGDRYYLEAQRFPGLDRTCALNPLLARLSELTGARLVGTADVHYPRGSDNEMQKIL 258

Query: 232 MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP----------EALENTVEIARRC 281
            A    + V +        D  L        I+ DL           EA+  +  IA RC
Sbjct: 259 HAAHRGSTV-EATEASWEYDILLTYPESDREIYMDLVGTGLTKAQAREAVLESGRIAERC 317

Query: 282 SFILQVHAPILPRFIEKECDDIQ-KEEENELRNKAV-AGLEVRLAQGAIAKGYHAQDYRQ 339
           + IL  + PI      KE D  +     NEL  K +  G   R+A     +  + Q Y+ 
Sbjct: 318 NVILPKNQPIRFPKPTKEVDGTKVPMSANELIRKWLNEGWHFRMATNPNMRK-NRQAYKA 376

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
           R++ EL ++    F  YFL+++D ++WAK + IPVGP RGS A S+  Y L IT++DP+ 
Sbjct: 377 RVEHELGMMEEKDFLDYFLVLSDAVRWAKDHKIPVGPARGSAAASLVCYLLRITEVDPML 436

Query: 400 F-SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
           F  +LFERF++P R  +PD D+DF  DRR EV RY++ KYG +RV  I  F   + K ++
Sbjct: 437 FPHMLFERFIDPTRTELPDVDLDFSDDRRIEVKRYLEEKYGADRVGNIGNFTRYRGKNSI 496

Query: 459 RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ-- 516
            DV R   +P  + + +  LI         +    +D+ F     A   ++R  E++   
Sbjct: 497 DDVARVYNIPVWETEIVKNLIIERSGGDSRISDSLEDT-FNMFPKAAAVLERHPELANAI 555

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFL 574
           +LEG YR    HAAGIVI + P++    +Y    +     V  ++ K  E  G++K DFL
Sbjct: 556 RLEGNYRGMGVHAAGIVISNTPITDTCAVYERESAGKTTQVIAYDKKDGEYVGMLKADFL 615

Query: 575 GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
           GL T+ ++  +LD +       DL  IP DD +           GIFQ E    R     
Sbjct: 616 GLSTMGMIGIALDMIGMDLE--DLYRIPLDDQKVLEAFRRGDVTGIFQFEGRATRIVCSD 673

Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           + PD  + +  + +L RPGP+ + +   Y   K+G++     HP++D +   T G ++YQ
Sbjct: 674 VVPDHFQHLADINALSRPGPLFSGMTAAYCEVKHGRKTPERYHPILDNLTDWTYGQVVYQ 733

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG--ASKNGISKTIAVNIF 750
           EQV+   + L G+ +SE   +R+ + +K+ E   + K +         +G +   A  I+
Sbjct: 734 EQVLSTIRELGGFPMSEVHSIRKIISQKLGEAQFEAKYKMFEDNACQNHGCTPEQAQKIW 793

Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
             LA  A Y FN +H  +Y++++Y   W+K H+P  F AA +     N EK+ K  +DA 
Sbjct: 794 RFLATSATYSFNIAHCISYSMLAYWQMWIKQHHPTAFYAAQLRKV--NDEKLYKLMRDAV 851

Query: 811 QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFD------ 863
           + NI I+PPS+N     +       +      I GVG  T+  I+E    K         
Sbjct: 852 RHNISILPPSINESMASWSAPMEGVVRAGFLQIPGVGPKTSEVIVEWRNQKIRKGQKAIA 911

Query: 864 -SLEDFCS--RVDSKKLNRRVLESLV-FAGALDCFGYSRMQ-LLQSLDNIQKYAQ 913
            S  D      ++ K +  + +E +V F  A D FG +R+Q L +SL  I K   
Sbjct: 912 ASAPDLMWSDLLEVKGIGPKSIEKIVAFCEAEDPFGLNRVQDLFKSLRRIIKPGN 966


>gi|189043217|ref|YP_001936156.1| gp65 [Mycobacterium phage Adjutor]
 gi|188090868|gb|ACD49650.1| gp65 [Mycobacterium phage Adjutor]
          Length = 1100

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 274/955 (28%), Positives = 436/955 (45%), Gaps = 69/955 (7%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           K   FV L  HS++S  +G   +   + ++A     A+A+T+  NL S  +  +     G
Sbjct: 33  KPMKFVSLHTHSTFSYGDGYGPVKEHVQRVAELGMGALALTEHGNLSSHAQLEKACNEIG 92

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I+PI GC+L +      +  +Q            +L     G Q L  +V++ +      
Sbjct: 93  IKPIFGCELYVAPPGENRKCHQ-----------TVLAMNEVGLQNLNRIVTKSW--KNFY 139

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-------------QVAEKRLLT 173
           +        L+E   EGLI+L+G +   +        S               A   +  
Sbjct: 140 RWPTTSWKMLEE-HNEGLIVLSGCADSVLSCTLLGGKSYGDKRLTASKRDIARAAGLIGR 198

Query: 174 FKKLFGDRLYVNLQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
           ++++FGDR Y+  QR  G DR       + +L+      LV T +  +    D E   +L
Sbjct: 199 YQEVFGDRYYLEAQRFPGLDRTCALNPLLARLSELTGARLVGTADVHYPRGSDNEMQKIL 258

Query: 232 MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP----------EALENTVEIARRC 281
            A    + V +        D  L        I+ DL           EA+  +  IA RC
Sbjct: 259 HAAHRGSTV-EATEASWEYDILLTYPESDREIYMDLVGTGLTKAQAREAVLESGRIAERC 317

Query: 282 SFILQVHAPILPRFIEKECDDIQ-KEEENELRNKAV-AGLEVRLAQGAIAKGYHAQDYRQ 339
           + IL  + PI      KE D  +     NEL  K +  G   R+A     +  + Q Y+ 
Sbjct: 318 NVILPKNQPIRFPKPTKEVDGTKVPMSANELIRKWLNEGWHFRMATNPNMRK-NRQAYKA 376

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
           R++ EL ++    F  YFL+++D ++WAK + IPVGP RGS A S+  Y L IT++DP+ 
Sbjct: 377 RVEHELGMMEEKDFLDYFLVLSDAVRWAKDHKIPVGPARGSAAASLVCYLLRITEVDPML 436

Query: 400 F-SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
           F  +LFERF++P R  +PD D+DF  DRR EV RY++ KYG +RV  I  F   + K ++
Sbjct: 437 FPHMLFERFIDPTRTELPDVDLDFSDDRRIEVKRYLEEKYGADRVGNIGNFTRYRGKNSI 496

Query: 459 RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ-- 516
            DV R   +P  + + +  LI         +    +D+ F     A   ++R  E++   
Sbjct: 497 DDVARVYNIPVWETEIVKNLIIERSGGDSRISDSLEDT-FNMFPKAAAVLERHPELANAI 555

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFL 574
           +LEG YR    HAAGIVI + P++    +Y    +     V  ++ K  E  G++K DFL
Sbjct: 556 RLEGNYRGMGVHAAGIVISNTPITDTCAVYERESAGKTTQVIAYDKKDGEYVGMLKADFL 615

Query: 575 GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
           GL T+ ++  +LD +       DL  IP DD +           GIFQ E    R     
Sbjct: 616 GLSTMGMIGIALDMIGMDLE--DLYRIPLDDQKVLEAFRRGDVTGIFQFEGRATRIVCSD 673

Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           + PD  + +  + +L RPGP+ + +   Y   K+G++     HP++D +   T G ++YQ
Sbjct: 674 VVPDHFQHLADINALSRPGPLFSGMTAAYCEVKHGRKTPERYHPILDNLTDWTYGQVVYQ 733

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG--ASKNGISKTIAVNIF 750
           EQV+   + L G+ +SE   +R+ + +K+ E   + K +         +G +   A  I+
Sbjct: 734 EQVLSTIRELGGFPMSEVHSIRKIISQKLGEAQFEAKYKMFEDNACQNHGCTPEQAQKIW 793

Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
             LA  A Y FN +H  +Y++++Y   W+K H+P  F AA +     N EK+ K  +DA 
Sbjct: 794 RFLATSATYSFNIAHCISYSMLAYWQMWIKQHHPTAFYAAQLRKV--NDEKLYKLMRDAV 851

Query: 811 QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFD------ 863
           + NI I+PPS+N     +       +      I GVG  T+  I+E    K         
Sbjct: 852 RHNISILPPSINESMASWSAPMEGVVRAGFLQIPGVGPKTSEVIVEWRNQKIRKGQKAIA 911

Query: 864 -SLEDFCS--RVDSKKLNRRVLESLV-FAGALDCFGYSRMQ-LLQSLDNIQKYAQ 913
            S  D      ++ K +  + +E +V F  A D FG +R+Q L +SL  I K   
Sbjct: 912 ASAPDLMWSDLLEVKGIGPKSIEKIVAFCEAEDPFGLNRVQDLFKSLRRIIKPGN 966


>gi|109522633|ref|YP_655445.1| gp66 [Mycobacterium phage PLot]
 gi|88910740|gb|ABD58665.1| gp66 [Mycobacterium phage PLot]
          Length = 1066

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 274/951 (28%), Positives = 435/951 (45%), Gaps = 69/951 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV L  HS++S  +G   +   + ++A     A+A+T+  NL S  +  +     GI+PI
Sbjct: 3   FVSLHTHSTFSYGDGYGPVKEHVQRVAELGMGALALTEHGNLSSHAQLEKACNEIGIKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            GC+L +      +  +Q            +L     G Q L  +V++ +      +   
Sbjct: 63  FGCELYVAPPGENRKCHQ-----------TVLAMNEVGLQNLNRIVTKSW--KNFYRWPT 109

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-------------QVAEKRLLTFKKL 177
                L+E   EGLI+L+G +   +        S               A   +  ++++
Sbjct: 110 TSWKMLEE-HHEGLIVLSGCADSVLSCTLLGGKSYGDKRLTASKRDITRAAGLIGRYQEV 168

Query: 178 FGDRLYVNLQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           FGDR Y+  QR  G DR       + +L+      LV T +  +    D E   +L A  
Sbjct: 169 FGDRYYLETQRFPGLDRTCALNPLLARLSELTGARLVGTADVHYPRGSDNEMQKILHAAH 228

Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP----------EALENTVEIARRCSFIL 285
             + V +        D  L        I+ DL           EA+  +  IA RC+ IL
Sbjct: 229 RGSTV-EATEASWEYDILLTYPESDREIYMDLVGTGLTKAQAREAVLESGRIAERCNVIL 287

Query: 286 QVHAPILPRFIEKECDDIQ-KEEENELRNKAV-AGLEVRLAQGAIAKGYHAQDYRQRLDF 343
             + PI      KE D  Q     NEL  K +  G   R+A     +  + Q Y+ R++ 
Sbjct: 288 PKNQPIRFPKPTKEVDGTQVPMSANELIRKWLNEGWHFRMATNPNMRK-NRQAYKARVEH 346

Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF-SL 402
           EL ++    F  YFL+++D ++WAK + IPVGP RGS A S+  Y L IT++DP+ F  +
Sbjct: 347 ELGMMEEKDFLDYFLVLSDAVRWAKDHKIPVGPARGSAAASLVCYLLRITEVDPMLFPHM 406

Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
           LFERF++P R  +PD D+DF  DRR EV RY++ KYG +RV  I  F   + K ++ DV 
Sbjct: 407 LFERFIDPTRTELPDVDLDFSDDRRIEVKRYLEEKYGADRVGNIGNFTRYRGKNSIDDVA 466

Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ--KLEG 520
           R   +P  + + +  LI         +    +D+ F     A   ++R  E++   +LEG
Sbjct: 467 RVYNIPVWETEIVKNLIIERSGGDSRISDSLEDT-FNMFPKAAAVLERHPELANAIRLEG 525

Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKT 578
            YR    HAAGIVI + P++    +Y    +     V  ++ K  E  G++K DFLGL T
Sbjct: 526 NYRGMGVHAAGIVISNTPITDTCAVYERESAGKTTQVIAYDKKDGEYVGMLKADFLGLST 585

Query: 579 LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
           + ++  +LD +       DL  IP DD +           GIFQ E    R     + PD
Sbjct: 586 MGMIGIALDMIGMDLE--DLYRIPLDDQKVLEAFRRGDVTGIFQFEGRATRIVCSDVVPD 643

Query: 639 CIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
             + +  + +L RPGP+ + +   Y   K+G++     HP++D +   T G ++YQEQV+
Sbjct: 644 HFQHLADINALSRPGPLFSGMTAAYCEVKHGRKTPERYHPILDNLTDWTYGQVVYQEQVL 703

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG--ASKNGISKTIAVNIFELLA 754
              + L G+ +SE   +R+ + +K+ E   + K +         +G +   A  I+  LA
Sbjct: 704 STIRELGGFPMSEVHSIRKIISQKLGEAQFEAKYKMFEDNACQNHGCTPEQAQKIWRFLA 763

Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             A Y FN +H  +Y++++Y   W+K H+P  F AA +     N EK+ K  +DA + NI
Sbjct: 764 TSATYSFNIAHCISYSMLAYWQMWIKQHHPTAFYAAQLRKV--NDEKLYKLMRDAVRHNI 821

Query: 815 QIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFD-------SLE 866
            I+PPS+N     +       +      I GVG  T+  I+E    K          S  
Sbjct: 822 SILPPSINESMASWSAPMEGVVRAGFLQIPGVGPKTSEVIVEWRNQKIRKGQKAIAASAS 881

Query: 867 DFCS--RVDSKKLNRRVLESLV-FAGALDCFGYSRMQ-LLQSLDNIQKYAQ 913
           D      ++ K +  + +E +V F  A D FG +R+Q L +SL  I K   
Sbjct: 882 DLMWSDLLEVKGIGPKSIEKIVAFCEAEDPFGLNRVQDLFKSLRRIIKPGN 932


>gi|109522839|ref|YP_655259.1| gp63 [Mycobacterium phage PBI1]
 gi|88910552|gb|ABD58479.1| gp63 [Mycobacterium phage PBI1]
          Length = 1066

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 273/951 (28%), Positives = 435/951 (45%), Gaps = 69/951 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV L  HS++S  +G   +   + ++A     A+A+T+  NL S  +  +     GI+PI
Sbjct: 3   FVSLHTHSTFSYGDGYGPVKEHVQRVAELGMGALALTEHGNLSSHAQLEKACNEIGIKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            GC+L +      +  +Q            +L     G Q L  +V++ +      +   
Sbjct: 63  FGCELYVAPPGENRKCHQ-----------TVLAMNEVGLQNLNRIVTKSW--KNFYRWPT 109

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-------------QVAEKRLLTFKKL 177
                L+E   EGLI+L+G +   +        S               A   +  ++++
Sbjct: 110 TSWKMLEE-HNEGLIVLSGCADSVLSCTLLGGKSYGDKRLTASKRDIARAAGLIGRYQEV 168

Query: 178 FGDRLYVNLQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           FGDR Y+  QR  G DR       + +L+      LV T +  +    D E   +L A  
Sbjct: 169 FGDRYYLEAQRFPGLDRTCALNPLLARLSELTGARLVGTADVHYPRGSDNEMQKILHAAH 228

Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP----------EALENTVEIARRCSFIL 285
             + V +        D  L        I+ DL           EA+  +  IA RC+ IL
Sbjct: 229 RGSTV-EATEASWEYDILLTYPESDREIYMDLVGTGLTKAQAREAVLESGRIAERCNVIL 287

Query: 286 QVHAPILPRFIEKECDDIQ-KEEENELRNKAV-AGLEVRLAQGAIAKGYHAQDYRQRLDF 343
             + PI      KE D  +     NEL  K +  G   R+A     +  + Q Y+ R++ 
Sbjct: 288 PKNQPIRFPKPTKEVDGTKVPMSANELIRKWLNEGWHFRMATNPNMRK-NRQAYKARVEH 346

Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF-SL 402
           EL ++    F  YFL+++D ++WAK + IPVGP RGS A S+  Y L IT++DP+ F  +
Sbjct: 347 ELGMMEEKDFLDYFLVLSDAVRWAKDHKIPVGPARGSAAASLVCYLLRITEVDPMLFPHM 406

Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
           LFERF++P R  +PD D+DF  DRR EV RY++ KYG +RV  I  F   + K ++ DV 
Sbjct: 407 LFERFIDPTRTELPDVDLDFSDDRRIEVKRYLEEKYGADRVGNIGNFTRYRGKNSIDDVA 466

Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ--KLEG 520
           R   +P  + + +  LI         +    +D+ F     A   ++R  E++   +LEG
Sbjct: 467 RVYNIPVWETEIVKNLIIERSGGDSRISDSLEDT-FNMFPKAAAVLERHPELANAIRLEG 525

Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKT 578
            YR    HAAGIVI + P++    +Y    +     V  ++ K  E  G++K DFLGL T
Sbjct: 526 NYRGMGVHAAGIVISNTPITDTCAVYERESAGKTTQVIAYDKKDGEYVGMLKADFLGLST 585

Query: 579 LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
           + ++  +LD +       DL  IP DD +           GIFQ E    R     + PD
Sbjct: 586 MGMIGIALDMIGMDLE--DLYRIPLDDQKVLEAFRRGDVTGIFQFEGRATRIVCSDVVPD 643

Query: 639 CIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
             + +  + +L RPGP+ + +   Y   K+G++     HP++D +   T G ++YQEQV+
Sbjct: 644 HFQHLADINALSRPGPLFSGMTAAYCEVKHGRKTPERYHPILDNLTDWTYGQVVYQEQVL 703

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG--ASKNGISKTIAVNIFELLA 754
              + L G+ +SE   +R+ + +K+ E   + K +         +G +   A  I+  LA
Sbjct: 704 STIRELGGFPMSEVHSIRKIISQKLGEAQFEAKYKMFEDNACQNHGCTPEQAQKIWRFLA 763

Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             A Y FN +H  +Y++++Y   W+K H+P  F AA +     N EK+ K  +DA + NI
Sbjct: 764 TSATYSFNIAHCISYSMLAYWQMWIKQHHPTAFYAAQLRKV--NDEKLYKLMRDAVRHNI 821

Query: 815 QIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFD-------SLE 866
            I+PPS+N     +       +      I GVG  T+  I+E    K          S  
Sbjct: 822 SILPPSINESMASWSAPMEGVVRAGFLQIPGVGPKTSEVIVEWRNQKIRKGQKAIAASAP 881

Query: 867 DFCS--RVDSKKLNRRVLESLV-FAGALDCFGYSRMQ-LLQSLDNIQKYAQ 913
           D      ++ K +  + +E +V F  A D FG +R+Q L +SL  I K   
Sbjct: 882 DLMWSDLLEVKGIGPKSIEKIVAFCEAEDPFGLNRVQDLFKSLRRIIKPGN 932


>gi|313665521|ref|YP_004047392.1| DNA polymerase III DnaE [Mycoplasma leachii PG50]
 gi|312949998|gb|ADR24594.1| putative DNA polymerase III DnaE [Mycoplasma leachii PG50]
          Length = 987

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 277/1025 (27%), Positives = 474/1025 (46%), Gaps = 91/1025 (8%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L + + Y  LE  ++++  ++ I  ++      ++T+ ++   EF +K     I+PIIG 
Sbjct: 7    LTIKNQYDFLESLITIDQYIEFIKKNKLSYAFYSETHTMYGVAEFFKKTTDNNIKPIIGL 66

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             ++ +                     ++     +GYQ L  + S  +L D          
Sbjct: 67   TIEFEDSTKF----------------IIYAKNKKGYQILNFVSS--FLNDGFNHYDYEIK 108

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
             ++ E+    ++++     G I    F          +      F D   +NL       
Sbjct: 109  EYILELVNNNVVVI-----GLISDLDFKTH------LINKLNNDFYDVKELNLYF----- 152

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR--PRVTPD 251
                                 N   +L   D +  ++L A+  +  + Q         PD
Sbjct: 153  ---------------------NQISYLDINDQKTFNILNAIKTNKTIKQIQNINNYFYPD 191

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA-PILPRFIEKECDDIQKEEENE 310
            +   +++           ++EN  ++    +  +  +      + + K  +         
Sbjct: 192  NDYLSKN----------YSIENIKKVINEINLKVDFNLFDSNKKHLVKYKNINNLSSFEY 241

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L    +  L+    Q  I      + Y  RL++EL VI +M FS YFLIV+D++ +AKKN
Sbjct: 242  LCQICLLSLKK--YQQKIKPNLDLKLYINRLNYELEVIKQMGFSDYFLIVSDYVNFAKKN 299

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I VGPGRGS AGS+ +Y L ITDIDPL + LLFERFLNPDR ++PD D+DF  +RR+EV
Sbjct: 300  DILVGPGRGSAAGSLISYLLRITDIDPLEYDLLFERFLNPDRSNLPDIDLDFQDNRREEV 359

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + Y+  KYG   V  I T+ ++  K A RD+ R   +    V+++ K +  D        
Sbjct: 360  LEYLFEKYGKNHVGMITTYQTIGYKMAWRDLCRVFNIDLLIVNKISKAL--DQYTNSDFL 417

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +++       +     +     K+ GL R  STHAAGIV+ D  L +LVP+ +   
Sbjct: 418  EFIKENKLLNDYFQNNVFKEIFITMHKIVGLPRQTSTHAAGIVLTDCDLRELVPI-KIGF 476

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
            + +   QF+M +++  GLIK D LGL+ LT +Q+    +   + +K+ L+ IP +D + +
Sbjct: 477  NGINQIQFDMNYLDDLGLIKMDILGLRNLTTIQEIKHLIYLNQNLKISLNKIPLNDKKAF 536

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL  K T GIFQLES GM   +  MQ D IE I    +LYRPGP + I  Y   K    
Sbjct: 537  ELLKNKQTSGIFQLESKGMTDLISKMQVDSIEQISIASALYRPGPQEMIPTYLGNKK-TN 595

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K   I   +  +LK T G+IIYQEQVMQ+   ++ +S ++AD++RRAM KK  + M   K
Sbjct: 596  KFKIIDQSVFEILKPTYGIIIYQEQVMQMLNKVANFSYAKADIIRRAMSKKNNKVMQSMK 655

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI+ A KN  S   A  I+  + KF++YGFNKSH+ +Y+ ISY  A+ K H+  EF  
Sbjct: 656  LEFINSAVKNNFSYNKANLIWNWIEKFSNYGFNKSHSISYSYISYWLAYFKAHFTTEFYT 715

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            + +   + N  K +++ ++   + I++   SV     ++++ + +IY  L  IK +G   
Sbjct: 716  SLLDQNIGNEIKTQQYIKELYDYKIKVNKSSVINANFNYQIINKQIYMPLTCIKSIGYEV 775

Query: 850  ARHI--MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             + I   ++  +  +  + +F   +  +K+N  VL++L+ AGALD F Y++  ++++LD 
Sbjct: 776  VKKINLAKSENENMYLDIHNFILAIVKQKININVLQTLIKAGALDIFNYNKKTMIENLDL 835

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +   A   ++                  +KI L  +      +    E+ + GF+   +P
Sbjct: 836  LISQANAYKQVNNI-----------LDDEKINLIIYDEYEDEILASFEKELYGFFIEQNP 884

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            +   K            +           +   ++  ++ K +  +++ +VT  +   E 
Sbjct: 885  ILKLKT---SNFDLNLIDISKLEYNKVQVILGYILKIKEIKDKNNNKMAFVTIFDNTSEL 941

Query: 1028 EANFF 1032
            E   F
Sbjct: 942  ELTIF 946


>gi|269115187|ref|YP_003302950.1| DNA polymerase III subunit alpha [Mycoplasma hominis]
 gi|268322812|emb|CAX37547.1| DNA polymerase III, alpha chain [Mycoplasma hominis ATCC 23114]
          Length = 996

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 296/1023 (28%), Positives = 502/1023 (49%), Gaps = 93/1023 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            ++L +++ +S LE  +++N+ + ++  +      IT+  N +S   F  +A    ++PI 
Sbjct: 4    INLHLNTIFSFLESTITINDFIQELLNNNIEYFGITEHCNFYSMPHFLNEARKHDLKPIF 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  +++ +++NL                ++     E +  L  L      L+ GK+   I
Sbjct: 64   GLDVNVKIENNL-------------YRFIVYCQNKESFMNLKMLS-----LNYGKKGY-I 104

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             L+ +++     LI +     G                    +KK       + ++ H  
Sbjct: 105  DLAEIRDYSN--LIWIEHPIFG-------------------YYKKT---NNILEIENHYF 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                 + +  ++    +  L+  N++  L  +D      +  ++++ +  +        D
Sbjct: 141  AISQYDIENSEIQNIFDKCLL-INHNSILKYDDNSIIKTMSNISNNKIF-ESIYEEFKVD 198

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
               KN        S L E +E T + A++  F ++     +P+F     +D        L
Sbjct: 199  IETKNN-------SKLEELIERTNDFAKKLYFEIETKGFKMPKFK----NDKNIASNEYL 247

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            +      +  +       K     +Y+QR   EL VI  + F+ YFL+V D++ WAK NN
Sbjct: 248  KLLLFKSIREKF-----DKYSWTDEYQQRFLKELKVIEDLNFADYFLVVQDWVNWAKNNN 302

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I +GPGRGS AGS+  Y L IT++DP+++ L+FERFLN +R++MPD DID   ++R++VI
Sbjct: 303  IKIGPGRGSAAGSLIGYLLNITEVDPIKYDLIFERFLNSNRVTMPDIDIDVQDNKRNDVI 362

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             Y+  KYGHE VA I+TF SL  K+A+RD+ R   +  + ++ + K I ND      L  
Sbjct: 363  EYLLKKYGHEFVANIVTFSSLGKKSAIRDILRINNIAPTLINEISKNIENDEQD--LLVE 420

Query: 492  IADDSRFR----EARLADPSVD-RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              ++   +    +    D S   R+L  + ++ G YR   THAAG+VI D+P+  + P+ 
Sbjct: 421  YNENRNLQLSLAKLNPNDESFSIRILNQAARISGFYRQIGTHAAGLVISDQPVISIAPVQ 480

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
             +   +   TQ +M+++E  GL+K D LGLKTLT +   +D + Q   +K++L  I   D
Sbjct: 481  YNS-ENFLQTQISMEYLEDFGLVKMDILGLKTLTTISNIVDLIYQNQNLKINLKDIDLTD 539

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  LL++  T G+FQ+ES  M +AL  ++ +  EDI+A++SL RPGPI N+ VY  RK
Sbjct: 540  QKTLELLSSGHTRGVFQVESPIMIKALRQVKVNNFEDIVAIISLNRPGPIKNVSVYAKRK 599

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E I  I+   D +L  T G+I+YQEQ+M+IAQ+++  +  EAD LRR + KK   EM
Sbjct: 600  FGLEPIPKINNEYDKILDSTYGIIVYQEQIMKIAQVVAKMTFIEADNLRRIISKKKVNEM 659

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +  K  FI  A KNG  K++A NIF  + KFA YGFN+SHA +Y++I++Q A++K HYP+
Sbjct: 660  EDIKSIFIERAMKNGYEKSLATNIFNSIEKFASYGFNRSHAVSYSIITFQMAFLKAHYPL 719

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF  + ++    + + I KF  +A +  ++I+ P +N    +  + + +I   L  IKG+
Sbjct: 720  EFYTSCISSAHGSQDTIAKFVNEASECGVEIVSPDINLSESEAIIKNRKIILPLTLIKGL 779

Query: 846  GTTTARHIMEASAD-KPFDSLEDFCSRVDSKKL-NRRVLESLVFAGALDCFGYSRMQLLQ 903
            G   A  I+E  +   P+ +  DF  ++ S +   +  +E L+ A  L  F Y++  LL 
Sbjct: 780  GPEIANSIVENRSKYGPYKNFLDFLLKISSSQSIGKSTIELLIKANTLRSFNYNQNTLLN 839

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFEN--EQRVL 959
             +           K        +F +     S  I  + +   + N  + FE   E  +L
Sbjct: 840  EIQKNNTDTMLFIK--------MFKNNIEGVSPNIIDSYKPSEILNQDIMFEKKNEIELL 891

Query: 960  GFYFSGHPLDVYK-PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            G         VY        G+ G    +    GN         + +QK ++KG+    +
Sbjct: 892  G--------QVYNFNSSASNGMPGQTSFIDMHVGNEYLAIVNCTNVKQKISKKGNNYFEL 943

Query: 1019 TFS 1021
               
Sbjct: 944  DLE 946


>gi|308523775|gb|ADO33730.1| putative error-prone DNA polymerase [Deinococcus ficus]
          Length = 1069

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 282/1038 (27%), Positives = 455/1038 (43%), Gaps = 63/1038 (6%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75
              S +S     +S   ++ + AA    A+ + D  +L  A+E    A   GI  ++G  L
Sbjct: 21   CQSYFSEGRSTVSPRRLVQRAAAAGFTAVGLADWCSLAGAVELHDVASELGISAVVGVTL 80

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
             +           G+ P  T P ++LL ++ EGY+ L ELV+ + L    + +  +  + 
Sbjct: 81   PVIFP------AVGRQPSETFP-MILLATSREGYETLCELVTLINL----QHNAGLPWAV 129

Query: 136  LQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-D 193
            ++E+ G E L+ LTGG  G            +A + L   K +F   LYV L       +
Sbjct: 130  IEELRGQEHLVCLTGGRGGFPTLLGERKELALAARHLTALKGIFPMGLYVQLYHGEAPNE 189

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH- 252
            R R   +  LA   ELP+VA         EDY   D L        V      R   D  
Sbjct: 190  RRRLEYLRGLARDLELPVVAAPEIRMADREDYPLLDALTCARLGIDVQTPHPERPRNDAL 249

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
             ++       +    P+   N   IA+ C + L       P          Q   E    
Sbjct: 250  SIETPEHWGQLLPF-PDGTLNAARIAQVCRWDLLPERLHSPEPTLPPGMTPQAALEERAL 308

Query: 313  NKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
              A       + +   G+           +RL  EL  +A +  +G+FL  A+   + K 
Sbjct: 309  AAAAEKYNECVTEALKGSREGDVSLSQATERLQSELATVAELDMAGFFLTAAEVADYCKA 368

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            + I +  GRGS AGSV  Y L IT  DPL+ +LLFERFL+  R SMPD D D    RRD+
Sbjct: 369  HGI-LAAGRGSAAGSVLCYVLGITLTDPLKHNLLFERFLHTGRTSMPDVDFDIASSRRDQ 427

Query: 430  VIRYVQNKYGHERV--AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            V+R+V+ ++G      A +    + +  +A++D+GRAL +P    DRL + +  D  H  
Sbjct: 428  VLRWVEERWGMTGAGEAMVANRITYRLPSAVQDLGRALGLPPELRDRLSRALGRDFRHHR 487

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEG-LYRHASTHAAGIVIGDRPLSQLVPMY 546
              +    DS F E     P  + LL++ +++E    RH + H+ G+V+    L++  P+ 
Sbjct: 488  PHRVREADSIFCEVLGDAPIKEALLKLLERVEARFTRHLAPHSGGVVLSSASLTRYSPLM 547

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS----LDFLAQRGVKVDLSLIP 602
            R       +T F+   +E+ GLIK D LGL+ L  L+++    L    Q     DL    
Sbjct: 548  RSSGGIRMLT-FDKDDVERLGLIKLDLLGLRMLAALERAREEVLRLTGQWMPYGDL---- 602

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VV 660
             DD   +  +++  T+G+FQ+ES    Q    +QP  +E +   ++L RPGPI +     
Sbjct: 603  PDDPRVWAEISSGDTMGLFQIESPAQVQMTARLQPKTMEQLAHQIALVRPGPIQSGTVHP 662

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK- 719
            Y  R  G+E +      I  +L+ T G +++QEQ+++IA   +GY    AD  R  + K 
Sbjct: 663  YVRRARGEEPVPEQMEPIRSILRATHGTLMFQEQILRIAVQFAGYDWPRADRFRSRLSKV 722

Query: 720  KIKEEMDKQKERFISGASKN-GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            + + E+ + K  F+ GA++  G     A  IF + A F  YGF +SHA A+A  SY +A+
Sbjct: 723  EDEAELQQLKAEFVLGAAQTVGAFPEEAEEIFGMCAAFRGYGFAESHAHAFAQHSYASAY 782

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-YY 837
            M+ ++P  F A  +T E   +       Q+ R+  +Q+ P  +N   + ++  + R    
Sbjct: 783  MRHYHPAAFFAGVLT-EAPGMWPAGTIAQECRRRKVQLAPVDINRSGLAWRAENLRSIRA 841

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG- 895
            SL  + G+    AR I++       F S+EDF  RVD  K     LE+LV AGA D    
Sbjct: 842  SLVTVDGISEDAARMIVQERLVGGKFRSVEDFYDRVDLPKDR---LETLVKAGAFDRIDA 898

Query: 896  -YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R +    L  +    +                 +G       + + S  +   +   
Sbjct: 899  QKNRREAYYVLHTVANTRK--------------PGTRGLLHVSTDVPELSEMSEPEQLNL 944

Query: 955  EQRVLGFYFSG-HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            +    G   SG H LD ++  LR +G +          G  +  A ++V++Q+  T KG 
Sbjct: 945  DLETKGLSESGAHLLDAHRARLRDLGCQALA---GLRHGETVWAAGVIVARQRPPTAKG- 1000

Query: 1014 RIGWVTFSEPAKEYEANF 1031
               +    +     +A  
Sbjct: 1001 -FAFYVLEDATARVQAII 1017


>gi|309807964|ref|ZP_07701892.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
            01V1-a]
 gi|308168815|gb|EFO70905.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
            01V1-a]
          Length = 705

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 245/677 (36%), Positives = 371/677 (54%), Gaps = 18/677 (2%)

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            +IV D I +     I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD
Sbjct: 1    MIVWDVINYCHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPD 60

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+D   +RR+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       ++   K
Sbjct: 61   IDLDIPDNRRNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQK 120

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
             IP   +      A      FR    A  S     E+++K+EGL RH S HAAG+VI D 
Sbjct: 121  AIPKSKSKITLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDM 180

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             +++ V +       +PVTQ   K++E  GL+K DFLGL  LT+L  + + +   G+K+D
Sbjct: 181  SIAKTVGLQNGSL-GIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNAFNEVKMSGIKLD 239

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP DD  T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI N
Sbjct: 240  MDKIPLDDPATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKN 299

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y  RKN +EK+V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+
Sbjct: 300  IDSYIRRKNKEEKVVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAI 359

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K   EM K    F++ A + G S + A +IFE + KF++YGFNKSH+ AY+ +SY  A
Sbjct: 360  SSKDSMEMKKIGVDFVNRAVQQGHSASAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLA 419

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYP +F  A +   + + +K+ K+  D +  NI+I  P +N    +F + D     
Sbjct: 420  YLKVHYPKQFYVALLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIV 479

Query: 838  -SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L +I G+       IM     +P  SL DF  ++D+K L+  ++ +L+ +GA D    
Sbjct: 480  TGLDSIIGLRMDFVEQIMN--LQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHK 537

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LL S +++      +    +  +  +F   +    D        + +++ + E E 
Sbjct: 538  NRSALLASYEDLL-----ICIKMSGGNNVLFQALEPKELD------IKMPSNAQKEEWET 586

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             VLGF     P+   +   +K G K + +      G ++     ++  +   T+   ++ 
Sbjct: 587  SVLGFSPQIDPILAAQIYAKKYGFKPFSDFTFYDEGVSV---GKMMDIKVITTKNNKKMA 643

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +  F++  +  +   FP
Sbjct: 644  FAKFNDLHETVDFVIFP 660


>gi|288919037|ref|ZP_06413378.1| DNA-directed DNA polymerase [Frankia sp. EUN1f]
 gi|288349577|gb|EFC83813.1| DNA-directed DNA polymerase [Frankia sp. EUN1f]
          Length = 771

 Score =  596 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 218/738 (29%), Positives = 358/738 (48%), Gaps = 42/738 (5%)

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
            + G   R       +   A D   +L  EL VI ++ F GYFLIV D +++ ++++I + 
Sbjct: 1    MQGAVRRYGPAQAERVAGAYD---QLVHELKVIEQLGFPGYFLIVHDIVEFCRRSDI-LC 56

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
             GRGS A S   YAL IT++D + F LLFERFL P+R   PD DID    RR+EVI+YV 
Sbjct: 57   QGRGSAANSAVCYALGITNVDAVSFGLLFERFLAPERDGPPDIDIDIESGRREEVIQYVY 116

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
             +YG +R AQ+    + + ++A+RDV RAL     Q D   + I      P       D 
Sbjct: 117  GRYGRDRAAQVANVITYRPRSAVRDVARALGFSPGQQDAWSRQIDRGMPRPAHPADRPDT 176

Query: 496  SRFR--------------EARLADPSV-DRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                              EA      +   +L+++ +L G  RH   H+ G+VI DRP++
Sbjct: 177  RADADADADAGAGAGAGIEAPDTSAGIPAEVLDLAGQLLGFPRHLGIHSGGMVICDRPVA 236

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLS 599
            ++VP+         V Q++      AGL+KFD LGL  L++L    D +    G ++DL 
Sbjct: 237  EVVPVEWARMPGRTVVQWDKDDCAAAGLVKFDLLGLGMLSMLHGVFDLIRTHHGRQLDLG 296

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI- 658
             IP +D   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI    
Sbjct: 297  SIPPEDPAVYDMLCAADSVGVFQVESRAQMSTLPRLRPRRFYDLVVEVALIRPGPIQGGS 356

Query: 659  -VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
               Y  R+NG E++V  HPL+   L++T GV ++QEQ+MQ+A  ++G++ +EAD LRRAM
Sbjct: 357  VHPYIRRRNGAEEVVYPHPLLRRSLEKTLGVPLFQEQLMQMAIDVAGFTPAEADQLRRAM 416

Query: 718  GKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            G K   E +D+ + RF +G + NGI+  +A +++  LA FAD+GF +SH+ ++A + Y +
Sbjct: 417  GAKRATERIDRLRTRFYAGMAVNGITGAVADDLYAKLAAFADFGFPESHSVSFAFLVYAS 476

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNR 834
            +W+K +YP  F AA +  +       +    DAR+  + +  P +N       +      
Sbjct: 477  SWVKLYYPAAFCAALLNAQPMGFYSPQSLVADARRHGVVVHGPDLNASEAGVTLVGSPAA 536

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +   LA I+ +G   A  I+ E  A  P+  + D   RV  +      +E+L  AGA  C
Sbjct: 537  LRLGLAGIRRLGDALAERIVAERRACGPYQDMSDLVRRVGLR---TEQIEALATAGAFGC 593

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG +R + L +              R +     F  +    +  +         ++    
Sbjct: 594  FGLARREALWAAG----AVAQARPGRLDGMV--FGADVSAVAAAL-----PGMTTAETVV 642

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +    G     +P ++ +  L ++G+           G  + +A +V  +Q+ +T  G+
Sbjct: 643  ADLWATGITPGCYPTELVRGRLDELGVVVARRLRDLGGGRRVLVAGVVTHRQRPQTAGGT 702

Query: 1014 RIGWVTFSEPAKEYEANF 1031
               +++  +         
Sbjct: 703  T--FLSLEDETGLVNIIC 718


>gi|72080910|ref|YP_287968.1| DNA polymerase III DnaE [Mycoplasma hyopneumoniae 7448]
          Length = 989

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 279/975 (28%), Positives = 466/975 (47%), Gaps = 92/975 (9%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           +   L K+   ++L   + Y+ L   + L++++     +    + ITD N++F   +F +
Sbjct: 1   MLLILTKNMQLINLHTRTEYTFLSSTIKLDSLIKFALENNLKTLVITDLNSMFGVPKFYK 60

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
                 I P+IG +++I+                   + +LL     GY  L E  S+  
Sbjct: 61  LCKQNKINPVIGLEIEIEN-----------------FNFILLAKNYSGYVILSEFSSK-- 101

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 +   + L+ L E   + +I+        +D       +Q  E+    F +    
Sbjct: 102 ----KTKKKDLFLTDLAE--KDDIII--------VDHPKKGFYAQKKEQLSKLFGEKQLK 147

Query: 181 RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+     +  +     +   L    ++                   + L  +  +T+ 
Sbjct: 148 NYYIVENNPKIENAVYLQERNLLFAEEKI-----------------YLEALSKIKGTTLD 190

Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
           S             K   E+       P  ++ T  +                 F   + 
Sbjct: 191 SSTKFFDFN-----KWEQEI------DPIIIKRTNYLVENIQIQFPKID-----FNLPDL 234

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFL 358
           D     E + L       L+  L +    +     +Y+   RL +E   I ++KF+ YFL
Sbjct: 235 DHKNGLESDLL-------LKKILKEAVQNRRIELSNYKWKARLQYEYETICKLKFTNYFL 287

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           I+ DF++WA+KN I +GPGRGS +GS+ AY L IT ++PL++ L+FERFLNP R++MPD 
Sbjct: 288 IIWDFLKWARKNEILIGPGRGSASGSLVAYLLEITSVNPLKYGLIFERFLNPQRITMPDI 347

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           DID    RR EVI Y+  KYG +  A IITF +L AK+  RD+ +   +P  Q+++  KL
Sbjct: 348 DIDIQDTRRQEVIDYLFEKYGPDHCATIITFSTLAAKSVFRDISKIFGIPEIQINKNAKL 407

Query: 479 IPNDPA-------HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
           IPN+              + + +     +A        ++ +IS  LEG+ R +STHAAG
Sbjct: 408 IPNNANLSQLYNQKSSEFRRLIEKGDNFKAENNSEIYKKIYKISAFLEGMPRQSSTHAAG 467

Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
           IV+   P+++LVP+  + + +L   Q+  ++IE   L+K D LGLK LT++   L  +  
Sbjct: 468 IVLSKIPITKLVPV-HNSKENLNQIQYAAEFIEDFSLLKIDLLGLKNLTIVANILAKINS 526

Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            G K+  + +P  ++ T +LL+   T GIFQLES GM  +++ +    I DIIA++SL+R
Sbjct: 527 DGHKITFNQLPISENSTNNLLSQGKTSGIFQLESPGMTASIKKIGVSSINDIIAIISLFR 586

Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           PGPI  I  Y   K  +     I P  D +++ T GVIIYQEQ+MQI Q+++G++L +AD
Sbjct: 587 PGPIQQIPTYAKNKE-RNNWEKIFPEYDKIVESTFGVIIYQEQIMQICQVVAGFNLEQAD 645

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           ++R A+ KK + ++DK KE FI   +  G    +  +I+ L+ KF+DYGFNK+HA AYA 
Sbjct: 646 IIRVAISKKDETKLDKIKENFIKNGTNLGYEPKLVEHIYNLIYKFSDYGFNKAHAVAYAT 705

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--FK 829
           ++Y+ A++K  YP  F    ++ E     KIKK+  +AR F  +I  P++N    +  F 
Sbjct: 706 LAYKMAYLKAKYPAYFFVELISNENGAQAKIKKYVGEARNFGFKIHRPNINFSTENAVFD 765

Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            G N I+  L  +KG+GT   + I++    +  + +  DF  R+     ++  +E L+FA
Sbjct: 766 KGKNTIFLPLLMVKGLGTIAIKTIIDERSKNGIYKNFLDFIKRMKLVNFSKVAIEKLIFA 825

Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
             L  FG ++  L  + + +  +A +V  ++              F   +   +    N 
Sbjct: 826 NTLSDFG-NQETLAHNFELLWNHASFVLNDKDGN----LVLTTDNFGLDLEFLEKIPYNQ 880

Query: 949 SVRFENEQRVLGFYF 963
              +ENE + LG  F
Sbjct: 881 EKNYENEVKYLGMSF 895


>gi|312601529|gb|ADQ90784.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 168]
          Length = 981

 Score =  593 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 279/964 (28%), Positives = 461/964 (47%), Gaps = 92/964 (9%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           ++L   + Y+ L   + L++++     +    + ITD N++F   +F +      I P+I
Sbjct: 4   INLHTRTEYTFLSSTIKLDSLIKFALENNLKTLVITDLNSMFGVPKFYKLCKQNKINPVI 63

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +++I+                   + +LL     GY  L E  S+        +   +
Sbjct: 64  GLEIEIEN-----------------FNFILLAKNYSGYVILSEFSSK------KTKKKDL 100

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
            L+ L E   + +I++     G   +     S    EK+L  +  +  +   +       
Sbjct: 101 FLTDLAE--KDDIIIIDHPKKGFYAQKKEQLSKLFGEKQLKNYY-IVENNPKIEN----- 152

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                               V       L  E+    + L  +  +T+ S          
Sbjct: 153 -------------------AVYLQERNLLFAEEKIYLEALSKIKGTTLDSSTKFFDFN-- 191

Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
              K   E+       P  ++ T  +                 F   + D     E + L
Sbjct: 192 ---KWEQEI------DPIIIKRTNYLVENIQIQFPKID-----FNLPDLDHKNGLESDLL 237

Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
                  L+  L +    +     +Y+   RL +E   I ++KF+ YFLI+ DF++WA+K
Sbjct: 238 -------LKKILKEAVQNRRIELSNYKWKARLQYEYETICKLKFTNYFLIIWDFLKWARK 290

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
           N I +GPGRGS +GS+ AY L IT ++PL++ L+FERFLNP R++MPD DID    RR E
Sbjct: 291 NEILIGPGRGSASGSLVAYLLEITSVNPLKYDLIFERFLNPQRITMPDIDIDIQDTRRQE 350

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA----- 484
           VI Y+  KYG +  A IITF +L AK+  RD+ +   +P  Q+++  KLIPN+       
Sbjct: 351 VIDYLFEKYGPDHCATIITFSTLAAKSVFRDISKTFGIPEIQINKNAKLIPNNANLSQLY 410

Query: 485 --HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                  + + +     +A        ++ +IS  LEG+ R +STHAAGIV+   P+++L
Sbjct: 411 DQKSSEFRRLIEKGDNFKAENNSEIYKKIYKISAFLEGMPRQSSTHAAGIVLSKIPITKL 470

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
           VP+  + + +L   Q+  ++IE   L+K D LGLK LT++   L  +   G K+  + +P
Sbjct: 471 VPV-HNSKENLNQIQYAAEFIEDFSLLKIDLLGLKNLTIVANILAKINSDGHKITFNQLP 529

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +  T +LL+   T GIFQLES GM  +++ +    I DIIA++SL+RPGPI  I  Y 
Sbjct: 530 ISEDSTNNLLSQGKTSGIFQLESPGMTASIKKIGVSSINDIIAIISLFRPGPIQQIPTYA 589

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             K  +     I P  D +++ T GVIIYQEQ+MQI Q+++G++L +AD++R A+ KK +
Sbjct: 590 KNKE-RNNWEKIFPEYDKIVESTFGVIIYQEQIMQICQVVAGFNLEQADIIRVAISKKDE 648

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            ++DK KE FI   +  G    +  +I+ L+ KF+DYGFNK+HA AYA ++Y+ A++K  
Sbjct: 649 TKLDKIKENFIKNGTNLGYEPKLVEHIYNLIYKFSDYGFNKAHAVAYATLAYKMAYLKAK 708

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--FKVGDNRIYYSLA 840
           YP  F    ++ E     KIKK+  +AR F  +I  P++N    +  F  G N I+  L 
Sbjct: 709 YPAYFFVELISNENGAQAKIKKYVGEARNFGFKIHRPNINFSTENAVFDKGKNTIFLPLL 768

Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            +KG+GT   + I++    +  + +  DF  R+     ++  +E L+FA  L  FG ++ 
Sbjct: 769 MVKGLGTIAIKTIIDERSKNGIYKNFLDFIKRMKLVNFSKVAIEKLIFANTLSDFG-NQE 827

Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            L  + + +  +A +V  ++              F   +   +    N    +ENE + L
Sbjct: 828 TLAHNFELLWNHASFVLNDKDGN----LVLTTDNFGLDLEFLEKIPYNQEKNYENEVKYL 883

Query: 960 GFYF 963
           G  F
Sbjct: 884 GMSF 887


>gi|71893932|ref|YP_279378.1| DNA polymerase III DnaE [Mycoplasma hyopneumoniae J]
 gi|71852059|gb|AAZ44667.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae J]
          Length = 981

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 277/964 (28%), Positives = 462/964 (47%), Gaps = 92/964 (9%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           ++L   + Y+ L   + L++++     +    + ITD N++F   +F +      I P+I
Sbjct: 4   INLHTRTEYTFLSSTIKLDSLIKFALENNLKTLVITDLNSMFGVPKFYKLCKQNKINPVI 63

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +++I+                   + +LL     GY  L E  S+        +   +
Sbjct: 64  GLEIEIEN-----------------FNFILLAKNYSGYVILSEFSSK------KTKKKDL 100

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
            L+ L E   + +I+        +D       +Q  E+    F +      Y+     + 
Sbjct: 101 FLTDLAE--KDDIII--------VDHPKKGFYAQKKEQLGKLFGENQLKNYYIVENNPKI 150

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            +     +   L    ++                   + L  +  +T+ S          
Sbjct: 151 ENAVYLQERNLLFAEEKI-----------------YLEALSKIKGTTLDSSTKFFDFN-- 191

Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
              K   E+       P  ++ T  +                 F   + D     E + L
Sbjct: 192 ---KWEQEI------DPIIIKRTNYLVENIQIQFPKID-----FNLPDLDHKNGLESDLL 237

Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
                  L+  L +    +     +Y+   RL +E   I ++KF+ YFLI+ DF++WA+K
Sbjct: 238 -------LKKILKEAVQNRRIELSNYKWKARLQYEYETICKLKFTNYFLIIWDFLKWARK 290

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
           N I +GPGRGS +GS+ AY L IT ++PL++ L+FERFLNP R++MPD DID    RR E
Sbjct: 291 NEILIGPGRGSASGSLVAYLLEITSVNPLKYDLIFERFLNPQRITMPDIDIDIQDTRRQE 350

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA----- 484
           VI Y+  KYG +  A IITF +L AK+  RD+ +   +P  Q+++  KLIPN+       
Sbjct: 351 VIDYLFEKYGPDHCATIITFSTLAAKSVFRDISKTFGIPEIQINKNAKLIPNNANLSQLY 410

Query: 485 --HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                  + + +     +A        ++ +IS  LEG+ R +STHAAGIV+   P+++L
Sbjct: 411 DQKSSEFRRLIEKGDNFKAENNSEIYKKIYKISAFLEGMPRQSSTHAAGIVLSKIPITKL 470

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
           VP+  + + +L   Q+  ++IE   L+K D LGLK LT++   L  +   G K+  + +P
Sbjct: 471 VPV-HNSKENLNQIQYAAEFIEDFSLLKIDLLGLKNLTIVANILAKINSDGHKITFNQLP 529

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             ++ T +LL+   T GIFQLES GM  +++ +    I DIIA++SL+RPGPI  I  Y 
Sbjct: 530 ISENSTNNLLSQGKTSGIFQLESPGMTASIKKIGVSSINDIIAIISLFRPGPIQQIPTYA 589

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             K  +     I P  D +++ T GVIIYQEQ+MQI Q+++G++L +AD++R A+ KK +
Sbjct: 590 KNKE-RNNWEKIFPEYDKIVESTFGVIIYQEQIMQICQVVAGFNLEQADIIRVAISKKDE 648

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            ++DK KE FI   +  G    +  +I+ L+ KF+DYGFNK+HA AYA ++Y+ A++K  
Sbjct: 649 TKLDKIKENFIKNGTNLGYEPKLVEDIYNLIYKFSDYGFNKAHAVAYATLAYKMAYLKAK 708

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--FKVGDNRIYYSLA 840
           YP  F    ++ E     KIKK+  +AR F  +I  P++N    +  F  G N I+  L 
Sbjct: 709 YPAYFFVELISNENGAQAKIKKYVGEARNFGFKIHRPNINFSTENAVFDKGKNTIFLPLL 768

Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            +KG+GT   + I++    +  + +  DF  R+     ++  +E L+FA  L  FG ++ 
Sbjct: 769 MVKGLGTIAIKTIIDERSKNGIYKNFLDFIKRMKLVNFSKVAIEKLIFANTLSDFG-NQE 827

Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            L  + + +  +A +V  ++              F   +   +    N    +ENE + L
Sbjct: 828 TLAHNFELLWNHASFVLNDKDGN----LVLTTDNFGLDLEFLEKIPYNQEKNYENEVKYL 883

Query: 960 GFYF 963
           G  F
Sbjct: 884 GMSF 887


>gi|144575533|gb|AAZ53945.2| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 7448]
          Length = 981

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 277/964 (28%), Positives = 462/964 (47%), Gaps = 92/964 (9%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           ++L   + Y+ L   + L++++     +    + ITD N++F   +F +      I P+I
Sbjct: 4   INLHTRTEYTFLSSTIKLDSLIKFALENNLKTLVITDLNSMFGVPKFYKLCKQNKINPVI 63

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +++I+                   + +LL     GY  L E  S+        +   +
Sbjct: 64  GLEIEIEN-----------------FNFILLAKNYSGYVILSEFSSK------KTKKKDL 100

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
            L+ L E   + +I+        +D       +Q  E+    F +      Y+     + 
Sbjct: 101 FLTDLAE--KDDIII--------VDHPKKGFYAQKKEQLSKLFGEKQLKNYYIVENNPKI 150

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            +     +   L    ++                   + L  +  +T+ S          
Sbjct: 151 ENAVYLQERNLLFAEEKI-----------------YLEALSKIKGTTLDSSTKFFDFN-- 191

Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
              K   E+       P  ++ T  +                 F   + D     E + L
Sbjct: 192 ---KWEQEI------DPIIIKRTNYLVENIQIQFPKID-----FNLPDLDHKNGLESDLL 237

Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
                  L+  L +    +     +Y+   RL +E   I ++KF+ YFLI+ DF++WA+K
Sbjct: 238 -------LKKILKEAVQNRRIELSNYKWKARLQYEYETICKLKFTNYFLIIWDFLKWARK 290

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
           N I +GPGRGS +GS+ AY L IT ++PL++ L+FERFLNP R++MPD DID    RR E
Sbjct: 291 NEILIGPGRGSASGSLVAYLLEITSVNPLKYGLIFERFLNPQRITMPDIDIDIQDTRRQE 350

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA----- 484
           VI Y+  KYG +  A IITF +L AK+  RD+ +   +P  Q+++  KLIPN+       
Sbjct: 351 VIDYLFEKYGPDHCATIITFSTLAAKSVFRDISKIFGIPEIQINKNAKLIPNNANLSQLY 410

Query: 485 --HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                  + + +     +A        ++ +IS  LEG+ R +STHAAGIV+   P+++L
Sbjct: 411 NQKSSEFRRLIEKGDNFKAENNSEIYKKIYKISAFLEGMPRQSSTHAAGIVLSKIPITKL 470

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
           VP+  + + +L   Q+  ++IE   L+K D LGLK LT++   L  +   G K+  + +P
Sbjct: 471 VPV-HNSKENLNQIQYAAEFIEDFSLLKIDLLGLKNLTIVANILAKINSDGHKITFNQLP 529

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             ++ T +LL+   T GIFQLES GM  +++ +    I DIIA++SL+RPGPI  I  Y 
Sbjct: 530 ISENSTNNLLSQGKTSGIFQLESPGMTASIKKIGVSSINDIIAIISLFRPGPIQQIPTYA 589

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             K  +     I P  D +++ T GVIIYQEQ+MQI Q+++G++L +AD++R A+ KK +
Sbjct: 590 KNKE-RNNWEKIFPEYDKIVESTFGVIIYQEQIMQICQVVAGFNLEQADIIRVAISKKDE 648

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            ++DK KE FI   +  G    +  +I+ L+ KF+DYGFNK+HA AYA ++Y+ A++K  
Sbjct: 649 TKLDKIKENFIKNGTNLGYEPKLVEHIYNLIYKFSDYGFNKAHAVAYATLAYKMAYLKAK 708

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--FKVGDNRIYYSLA 840
           YP  F    ++ E     KIKK+  +AR F  +I  P++N    +  F  G N I+  L 
Sbjct: 709 YPAYFFVELISNENGAQAKIKKYVGEARNFGFKIHRPNINFSTENAVFDKGKNTIFLPLL 768

Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            +KG+GT   + I++    +  + +  DF  R+     ++  +E L+FA  L  FG ++ 
Sbjct: 769 MVKGLGTIAIKTIIDERSKNGIYKNFLDFIKRMKLVNFSKVAIEKLIFANTLSDFG-NQE 827

Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            L  + + +  +A +V  ++              F   +   +    N    +ENE + L
Sbjct: 828 TLAHNFELLWNHASFVLNDKDGN----LVLTTDNFGLDLEFLEKIPYNQEKNYENEVKYL 883

Query: 960 GFYF 963
           G  F
Sbjct: 884 GMSF 887


>gi|172058225|ref|YP_001814685.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum 255-15]
 gi|171990746|gb|ACB61668.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum 255-15]
          Length = 1055

 Score =  591 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 286/1023 (27%), Positives = 473/1023 (46%), Gaps = 87/1023 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L V ++YS L+  + ++  LD++      A AI    +L     F        + PI+
Sbjct: 2    VQLNVRTAYSPLQSTIRMDRYLDEVKRRGFSAAAIC-ETSLTGVPAFMAGCKQRELIPIV 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  I+  +                +I+    T+ G + L  L S M + D        
Sbjct: 61   GFEQVIEPDE---------------LTILWYAKTSLGLKVLYRLASEMPVEDY------- 98

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                     +E + +L      P D A                       + + ++  R 
Sbjct: 99   ---------SELIAVLEPKRQAPEDEARLR------RLVAQWMGSAHKATILLGVKAVRS 143

Query: 192  Y-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              +R    +  Q A    +  +  +   +L  E+ +A   L A+   T+ +++   +V+ 
Sbjct: 144  TVERDSRERYRQAANALGIETIPIDPVRYLFREEADAFQALRAIDEGTMFAEQ---KVSR 200

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              +LK   E+   F+D          + R       +  P   R + +  DD      + 
Sbjct: 201  SAHLKLTEELQDQFTD-----RELRLLTRWAESQETLTLPFQSRPLPQVTDD----SNHA 251

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L   A  GL        +A G+  ++  +RL +EL VI +  F+ YFLIV D ++ AK  
Sbjct: 252  LNRLAHDGL--------LAHGHVGEEATKRLQYELEVIEKTGFADYFLIVEDLVRHAKSE 303

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I VGPGRGS AGS+ +YAL IT +DPL++ LLFERFLNP+R++MPD DID    RR+EV
Sbjct: 304  GIRVGPGRGSAAGSLVSYALGITTVDPLKYGLLFERFLNPERITMPDIDIDIEDARREEV 363

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + Y+  +YG + V QI T  +L AKAALRDV RAL+    + D   K +        +LQ
Sbjct: 364  LEYLVERYGKQHVGQIGTLSTLGAKAALRDVARALEFSKDETDAAAKQL----GKVTTLQ 419

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
             +   +             +LL+++Q +EGL R  S HAAG++IG   L +  P+     
Sbjct: 420  GLEQQASIYRWFSGSEKRRQLLQLAQAIEGLPRQRSIHAAGVIIGSEELIETTPVDLHA- 478

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
            S   VTQ+ MK IE+ GL+K D LGL+ LT L++    +        +  IP +D  T  
Sbjct: 479  SGRFVTQYLMKAIEQQGLLKIDLLGLRNLTRLRQMEQLIQHAYPDFSVERIPDEDKATLR 538

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T  IFQ ES+GM+Q L  ++P+  ED++A +SL+RPGP+  I +Y  RK G+  
Sbjct: 539  LFAKGETDQIFQFESAGMKQTLREVKPNRFEDLVATMSLFRPGPMKFIDLYAKRKAGQ-P 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
               +HP+++ +L  T GVI+YQEQ+M+I + ++G++L++AD+LRRA+ KK  + ++ +K+
Sbjct: 598  YQMVHPILEEILTATYGVIVYQEQIMEITRRVAGFTLAQADLLRRAISKKSSQSVEAEKK 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            RFI GA +NG   T+A  +++ + +FA YGFN+SHA AY  ISY   +MK HYP  F   
Sbjct: 658  RFIEGALQNGFDLTVAETLYDQIERFAGYGFNRSHAVAYTKISYALGYMKAHYPQIFSLV 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
            S+       ++ ++  +  R+  + ++PP +        +    I   +  ++G+     
Sbjct: 718  SI-------DQPERLVRVMREKRLPVLPPDIWMSDFRSTLEGKGIRLGIQTLRGITEKDF 770

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              + EA+      ++    S V   K  R  +E L+++GA D   +    L +    +  
Sbjct: 771  HTLREAAKTS--QTITQLLSAVGWGKKERAKIELLLYSGAFDRSTHGDRGLAEQ--EVLD 826

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            Y                   K T     T   ++      R   E+  LGF+ +  PL  
Sbjct: 827  YFTMASNTLLPDELASLGRRKTTTQTNRTATDWA------RL--ERESLGFWLTYSPL-- 876

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                ++      + ++++        L   +   ++ KT++   +  +   +     E  
Sbjct: 877  -MTAMKPPVETTHFQTLSLEGNQTNYLVCYIEQIREFKTKRAQTMAVIHAVDGYTTEEVV 935

Query: 1031 FFP 1033
             FP
Sbjct: 936  VFP 938


>gi|54020612|ref|YP_116107.1| DNA polymerase III DnaE [Mycoplasma hyopneumoniae 232]
 gi|53987785|gb|AAV27986.1| DNA polymerase III alpha chain 2 [Mycoplasma hyopneumoniae 232]
          Length = 985

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 278/964 (28%), Positives = 463/964 (48%), Gaps = 92/964 (9%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           ++L   + Y+ L   + L++++     +    + ITD N++F   +F +      I P+I
Sbjct: 4   INLHTRTEYTFLSSTIKLDSLIKFALENNLKTLVITDLNSMFGVPKFYKLCKQNKINPVI 63

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +++I+                   + +LL     GY  L E  S+        +   +
Sbjct: 64  GLEIEIEN-----------------FNFILLAKNYSGYVILSEFSSK------KTKKKDL 100

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
            L+ L E   + +I++     G   +     S   AEK+L  +  +  +   +       
Sbjct: 101 FLTDLAE--KDDIIIVDHPKKGFYAQKKEQLSKLFAEKQLKNYY-IVENNPKIEN----- 152

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                               V       L  E+    + L  +  +T+ S          
Sbjct: 153 -------------------AVYLQERNLLFAEEKIYLEALSKIKGTTLDSSTKFFDFN-- 191

Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
              K   E+       P  ++ T  +                 F   + D     E + L
Sbjct: 192 ---KWEQEI------DPIIIKRTNYLVENIQIQFPKID-----FNLPDLDHKNGLESDLL 237

Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
                  L+  L +    +     +Y+   RL +E   I ++KF+ YFLI+ DF++WA+K
Sbjct: 238 -------LKKILKEAVQNRRIELSNYKWKARLQYEYETICKLKFTNYFLIIWDFLKWARK 290

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
           N I +GPGRGS +GS+ AY L IT ++PL++ L+FERFLNP R++MPD DID    RR E
Sbjct: 291 NEILIGPGRGSASGSLVAYLLEITSVNPLKYDLIFERFLNPQRITMPDIDIDIQDTRRQE 350

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA----- 484
           VI Y+  KYG +  A IITF +L AK+  RD+ +   +P +Q+++  KLIPN+       
Sbjct: 351 VIDYLFEKYGPDHCATIITFSTLAAKSVFRDISKTFGIPETQINKNAKLIPNNANLSQLY 410

Query: 485 --HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                  + + +     +A        ++ +IS  LEG+ R +STHAAGIV+   P+++L
Sbjct: 411 DQKSSEFRRLIEKGDNFKAENNSEIYKKIYKISAFLEGMPRQSSTHAAGIVLSKIPITKL 470

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
           VP+  + + +L   Q+  ++IE   L+K D LGLK LT++   L  +   G K+  + +P
Sbjct: 471 VPV-HNSKENLNQIQYAAEFIEDFSLLKIDLLGLKNLTIVANILAKINSDGHKITFNQLP 529

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             ++ T +LL+   T GIFQLES GM  +++ +    I DIIA++SL+RPGPI  I  Y 
Sbjct: 530 ISENSTNNLLSQGKTSGIFQLESPGMTASIKKIGVSSINDIIAIISLFRPGPIQQIPTYT 589

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             K  +     I P  D +++ T GVIIYQEQ+MQI Q+++G++L +AD++R A+ KK +
Sbjct: 590 KNKE-RNNWEKIFPEYDKIVESTFGVIIYQEQIMQICQVVAGFNLEQADIIRVAISKKDE 648

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            ++DK KE FI   +  G    +  +I+ L+ KF+DYGFNK+HA AYA ++Y+ A++K  
Sbjct: 649 TKLDKIKENFIKNGTNLGYEPKLVEHIYNLIYKFSDYGFNKAHAVAYATLAYKMAYLKAK 708

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--FKVGDNRIYYSLA 840
           Y   F    ++ E     KIKK+  +AR F  +I  P++N    +  F  G N I+  L 
Sbjct: 709 YSAYFFVELISNENGAQAKIKKYVGEARDFGFKIHRPNINFSTENAVFDKGKNTIFLPLL 768

Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            +KG+GT   + I++    +  + +  DF  R+     ++  +E L+FA  L  FG ++ 
Sbjct: 769 MVKGLGTIAVKTIIDERSKNGIYKNFLDFIKRMKLVNFSKVAIEKLIFANTLSDFG-NQE 827

Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            L  + + +  +A +V  ++              F   +   +    +    +ENE + L
Sbjct: 828 TLAHNFELLWNHASFVLNDKDGN----LVLTTDNFGLDLEFLEKIPYSQEKNYENEVKYL 883

Query: 960 GFYF 963
           G  F
Sbjct: 884 GMSF 887


>gi|253699165|ref|YP_003020354.1| DNA polymerase III subunit alpha [Geobacter sp. M21]
 gi|251774015|gb|ACT16596.1| DNA polymerase III, alpha subunit [Geobacter sp. M21]
          Length = 1079

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 232/849 (27%), Positives = 385/849 (45%), Gaps = 58/849 (6%)

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEM 260
            QL     L     N       +D+  H VL A+  +T +S+        +   L    +M
Sbjct: 231  QLTGNDGLAEYLDNAGTSPQLDDFHLHRVLRAIHLNTKLSRLTPEMTATESDALYPAQKM 290

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
               F   PEAL+N++ IA  C       + I P F E   +   +     L+ +A  G  
Sbjct: 291  AEFFPHCPEALQNSIRIASLCKTDWDFSSTIFPAFRELGTEAAFET----LQERARQGAI 346

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
             R        G      + RLD EL++I    FS YFL+V +  + +++       GRGS
Sbjct: 347  WRY-------GSIDDRVQARLDKELSIIRDKGFSHYFLVVEELTKQSER-----TCGRGS 394

Query: 381  GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
             A S+ AY L IT +DP+R +L FERFLN  R   PD D+DF  D RD ++ +   +YG 
Sbjct: 395  AAASLVAYCLAITHVDPIRHNLFFERFLNEGRSDPPDIDVDFPWDERDAILDFAFARYGA 454

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
             R A +      + ++ALR+V +   +P  ++  + + I        S  A++    F+ 
Sbjct: 455  HRAAMVANQVGFKGRSALREVAKVYGLPDYEIKEMTERISGFWRAEQSAAAMSGHPLFKG 514

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
              L+      ++  +++L G  RH S H  G+VI    + + VP+       LP+ Q+  
Sbjct: 515  ESLSS-DWQEIMSTARRLNGQLRHLSLHCGGLVIVPDEIRKYVPVEI-SHKGLPLIQWEK 572

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI-PFDDHETYHLLTTKGTL 618
               E AGL+K D LG ++L +++ ++  +  Q+GV++D +   P DD  T  LL    T+
Sbjct: 573  DQTEDAGLVKIDILGNRSLAVIRDAMAAVKEQKGVEIDYATWRPLDDERTQSLLRRGLTI 632

Query: 619  GIFQLESSGMRQALEG----------MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            G F LES  +R  L             + D  E ++   S+ RP     I  Y  R  GK
Sbjct: 633  GCFYLESPSVRLLLRKIWSSTAPPETFRHDLFEVLVQASSIIRPAANSFIQEYVARLQGK 692

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE-MDK 727
                 +HPL++ +L ET G+ IYQEQ+ QIA  L+G+S  E D LR+ + KK +E+ +  
Sbjct: 693  -PWSHLHPLLESVLGETLGIAIYQEQITQIAMELAGFSAGEGDQLRKVITKKHREKRLAD 751

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             + +F++G  + G+ + +   I++ +  FA Y F K H+A+YA++S + A+MK ++P +F
Sbjct: 752  FRAKFMAGGMERGVPEKVLQGIWDQILSFAGYSFCKPHSASYALLSGKAAYMKANHPAQF 811

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +AA ++           +  + R+  + I+PP +N     +   +  +   L  I G+  
Sbjct: 812  IAAVIS-NQGGYYSPFAYISEGRRLGLAILPPDINESEYHYTGKEQTLRVGLMQIDGLTR 870

Query: 848  TTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS--RMQLLQS 904
              A  ++ E      F S ++F  R       R   E LV AG  D       R  LL  
Sbjct: 871  DGADRLLKERREHGAFASFKEFLRRARL---QRADAERLVKAGCFDALEGEEKRPTLLWE 927

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L + Q+ A  +                  F  K  L      ++ +    E   LGF  S
Sbjct: 928  LLHFQQQATAL-----------------LFEQKTELPHPPPYDAQMVLRQEVETLGFLVS 970

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HPL +YK   ++       E +    G  + +    ++ +  + + G  + +++F +  
Sbjct: 971  RHPLALYKAQWQRHRPIKASELIR-HTGKWVTMVGWWITTKTVEDKHGRPMEFISFEDVT 1029

Query: 1025 KEYEANFFP 1033
              ++A FFP
Sbjct: 1030 AIFDATFFP 1038



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 68/208 (32%), Gaps = 45/208 (21%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL  HSS S   G  S   +    A      +AITD N L+    F   A   GI PI
Sbjct: 2   FIHLHAHSSLSPNWGVHSPETLCSHAALLGFNTLAITDRNGLYGVPRFLDAARETGISPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           I                 G          VLL    EGY  +  L+S ++          
Sbjct: 62  I-----------------GTEAVTQNNRAVLLACNEEGYANISRLISDLHCQKNF----- 99

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
             L+        G+I+L+                    K L   K+   + L+V L    
Sbjct: 100 -DLTQALSEYRRGIIVLS-----------------DDRKLLSALKRKSEEGLFVELSPGH 141

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSL 218
                     + LA    LP VAT+ +L
Sbjct: 142 AM-----HSALTLARDLRLPPVATSRAL 164


>gi|330981299|gb|EGH79402.1| error-prone DNA polymerase [Pseudomonas syringae pv. aptata str. DSM
            50252]
          Length = 702

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 191/674 (28%), Positives = 314/674 (46%), Gaps = 43/674 (6%)

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  DRR+EVI+Y
Sbjct: 2    LCQGRGSAANSAVCYALGITELNPEQSNLLFERFISRERNEPPDIDVDFEHDRREEVIQY 61

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            +  +YG  R A      +     A+RDV + L +P  Q++ L +             ++ 
Sbjct: 62   IFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPDQINALAEAFSRWS------DSLP 115

Query: 494  DDSRFREARLAD--PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               R RE       P + R+L ++ +L G  RH S H  G VI + PL  LVP+     +
Sbjct: 116  SPERLREYGFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLVPVENAAMA 175

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYH 610
            D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P DD +TY 
Sbjct: 176  DRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGQRWTLASLPGDDRKTYE 235

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGK 668
            +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  Y  R+NG+
Sbjct: 236  MISRADTVGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRRNGE 295

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDK 727
            E +    P ++ + K T GV ++QEQVM++A L + Y+  EAD LRRAM   K    ++ 
Sbjct: 296  EAVTYP-PKLESVFKRTLGVPLFQEQVMEVAILAADYTPGEADELRRAMAAWKRHGGLEP 354

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +ER  +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W+K H P  F
Sbjct: 355  HRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPAAF 414

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD---------NRIYYS 838
              A +           +  QDAR+ +I+I P  V     D  +             I   
Sbjct: 415  TCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDRTRNLAIRLG 474

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L  ++      A  I  A A +PF    D   R +    + R  E+L  +GAL      R
Sbjct: 475  LRMVRSFREDDALRIEAARAKRPFVDATDLTLRAEL---DSRAAEALADSGALRGLIGHR 531

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             +    +  +                 +F       +  I      +   +     +   
Sbjct: 532  HRARWEVAGV------------EAQRPLFDDLPSEETQVI----LPLPTVAEDLVADYTT 575

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG     HPL + +  L     +  ++ ++      + +  +V+ +Q+  T  G  + +V
Sbjct: 576  LGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENDRTLSVVGLVIGRQRPGTASG--VTFV 633

Query: 1019 TFSEPAKEYEANFF 1032
            T  +         +
Sbjct: 634  TLEDEFGMVNVVVW 647


>gi|255535285|ref|YP_003095656.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium
            3519-10]
 gi|255341481|gb|ACU07594.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium
            3519-10]
          Length = 1017

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 239/1029 (23%), Positives = 428/1029 (41%), Gaps = 110/1029 (10%)

Query: 15   QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
              H+ +SL  G LS+  ++ + +      + +TD N + +  EF ++     I+PI G  
Sbjct: 4    NCHTYHSLRYGTLSVTELVKQASECGAEQLVLTDINTVTAVYEFKKECEKFNIKPIAGV- 62

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
                           +         + +   A+G   +  L++R                
Sbjct: 63   ---------------EIRKGNELLYITIAQDADGLAEINRLLTRYN-------------- 93

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR 194
                                + +     +       L    +   +  ++ ++     + 
Sbjct: 94   ---------------CDGAELPQTSPDFNKVTVIYPLENIPESLKENEFIGIK-----ET 133

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHY 253
                 +          +V  +     ++++Y  H VL A++++T++S+  +     P+  
Sbjct: 134  QLNLLISPKWQRFLNRMVMLHPVTVSTKKEYNLHRVLRAISNNTLISKLTEDDCCAPNEV 193

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
             K   E++  F   P+ +ENT  I   CSF      P    F        +  +   LR 
Sbjct: 194  FKPVEELLESFKMYPQIIENTQRILDFCSFEFDFKKPKNRTFFTGN----KASDAQLLRK 249

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
             A  GL+ R  +        ++   +R + EL VI  + FSGYFLI  D IQ++K     
Sbjct: 250  LAYEGLKKRYPE-------ESEAVLKRTEKELKVIDDLNFSGYFLITWDIIQYSKSRGFM 302

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
               GRGSGA S+ +Y L ITDI P+   L FERFLN  R S PDFDID+    RDE++ Y
Sbjct: 303  -HVGRGSGANSIVSYCLGITDICPIELDLYFERFLNMHRKSPPDFDIDWSWKERDEILNY 361

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            +  KYG + VA   T    + ++  R+VG+A  +P  ++D L                  
Sbjct: 362  IFGKYGKDHVAFCGTNVEFKYRSIFREVGKAFGLPKEELDALA----------------- 404

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
              ++  +    +  V  + +  Q LE      S H+ GI+I + P++    +    +   
Sbjct: 405  --TKPMDTHDTNSVVKLVHKYGQLLEKFPNQRSMHSCGILISEEPITNYTALEMPPKGFA 462

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP--FDDHETYH 610
             V QF+M   E  G  KFD L  + L  +  ++  +   RG+ VD+       +D     
Sbjct: 463  IV-QFDMHVAEDIGFEKFDILSQRGLGTINDTVKLIQKNRGITVDIDDTHTFKNDQNCNA 521

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGK 668
             L+   T+G F +ES  MR  L  ++ D  + ++A  S+ RPG   + ++  Y  R N  
Sbjct: 522  YLSIGKTIGCFYIESPAMRGLLRRLKCDNYKTLVAASSIIRPGVAQSGMMKEYIFRHNNP 581

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK--EEMD 726
             +    H +    L ET G+++YQE V++IA    G S  + D+LRRAM  K +    + 
Sbjct: 582  TQFEYFHDVFKEHLGETYGIMVYQEDVIKIALHFGGLSADDGDILRRAMSGKGRSLAALQ 641

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K K+ F     + G  + ++  ++  +  FA Y F K+H+A+YAV SYQ+ ++K +YPVE
Sbjct: 642  KVKDHFFESCREKGHPEKLSQEVYRQIESFAGYSFCKAHSASYAVESYQSLYLKVYYPVE 701

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ +++        + + +  + R     I  P VN   V+  V    +Y     I+ + 
Sbjct: 702  FMVSAIN-NGGGFYRTEVYVHECRMSGGVIHNPCVNKSGVETTVFGVDVYLGFMHIENLE 760

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            +  A  I +    +  + SLE+F  RV         L++L+F G     G  + +LL   
Sbjct: 761  SGMACFIFDERIRNGAYTSLENFIKRVPV---GIETLQTLIFVGGFRFTGKQKNELL--- 814

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
                +    +   +       F        +   L++   E++      E  +LGF  S 
Sbjct: 815  ---IEARLLMISFKPQNRLPSFFETPVQEYELPNLKRNRFEDAFD----EIEILGFAVSC 867

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             P ++ +   +  G     + +       +++ A ++S++   T KG+ + + T+ +   
Sbjct: 868  SPFELLQT--KYRGGVRAMDLI-KFHKKQVKMLAYLISRKHVPTTKGT-MFFGTWIDADG 923

Query: 1026 E-YEANFFP 1033
              ++   FP
Sbjct: 924  NYFDTAHFP 932


>gi|325971353|ref|YP_004247544.1| DNA polymerase III subunit alpha [Spirochaeta sp. Buddy]
 gi|324026591|gb|ADY13350.1| DNA polymerase III, alpha subunit [Spirochaeta sp. Buddy]
          Length = 970

 Score =  588 bits (1517), Expect = e-165,   Method: Composition-based stats.
 Identities = 266/1025 (25%), Positives = 458/1025 (44%), Gaps = 105/1025 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L + +SYSLL G +  N + D++       +AITD ++L       ++A    I+ I   
Sbjct: 5    LALTTSYSLLWGTMQPNRLFDQLKQWNVGKVAITDRDSLCGYPACREEAQRCNIELICAA 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             L                      ++   V + +GY++L  L+++            +  
Sbjct: 65   CLTQGSD-----------------TLYAFVQSQKGYEKLCLLLTQRAQDPSFSYLPSLLR 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                   ++GL++ T         A   ++   A+K LL +  +    L           
Sbjct: 108  E------SDGLVLAT-------TSAVLLHAF--AQKNLLVYAAITPSCL----------- 141

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQKDRPRVTPDH 252
                 + VQ A    LPL+A +++L L +ED E H +L  +  H TV S ++       +
Sbjct: 142  -----KAVQTARHLALPLLACDDALLLEKEDKEVHRILRCMDLHKTVGSLQEEDCAAQCN 196

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
             L +  +    FS  PEA++NT         +LQ + P     I  E     ++   EL 
Sbjct: 197  VLLDPDQWNQAFSCWPEAVDNTN--------LLQAYDPFPSSLIFPEYP--VEDAAKELE 246

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             + + G EVR        G       +R+ +EL +I    F+ YFL++ D +Q + +   
Sbjct: 247  ARVLKGAEVRY-------GEVNDAIMERITYELAIIRDKGFAPYFLVMHDIVQMSSR--- 296

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                GRGSGA S+ +Y L IT++DPL + L FERFL+P R+  PD D+DF  D RD V  
Sbjct: 297  --TCGRGSGAASIVSYCLFITNVDPLAYHLYFERFLSPSRLDPPDIDVDFAWDERDGVFA 354

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
             V  ++G +  A++      + + A+R+ GR   +  +Q+    K +       +     
Sbjct: 355  AVFERFGIDHCARVANHNCFRLRGAVRETGRCYGLSDTQITEAEKKLFISGQKDLD---- 410

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                        DP    +  I+ KLEGL +  S H  G+VI  +P+    P+ R     
Sbjct: 411  ------------DPLWQTICRIATKLEGLPKEISMHCGGLVITPKPVHCYAPL-RLSSDG 457

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS-LIPFDDHETYHL 611
             P+  +  +  E AG +K D LG ++L +++ +L+ L +  + +D     P +D  T   
Sbjct: 458  YPLLAWEKEGTEMAGFVKIDLLGNRSLAVIRDTLENLKEEELSIDQRLWHPTEDGPTIAA 517

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            L    ++G+F +ES  MRQ  +       E I+   S+ RP     I  Y  R  GK K 
Sbjct: 518  LEKGDSMGVFYIESPAMRQLQKKTGRGDFEHIVIHSSIIRPAANKFIAEYVERLRGK-KW 576

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEMDKQKE 730
              +HP +  +L ET G++ YQE V + A  L+G++ ++AD LR+ + KK   E++   ++
Sbjct: 577  EPLHPRLSYILDETYGILCYQEDVSKTAVALAGFNEADADKLRKVIAKKAGGEKLRVYRK 636

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            +F  G   N +S+     I+E++  F  Y F K H+A+YA++S+Q+A+++ H+P  F+AA
Sbjct: 637  QFFDGCKANAVSEQTTQQIWEMMLSFDGYSFCKPHSASYAMVSFQSAYLRVHHPSHFMAA 696

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT- 849
             ++       + + +  +AR+  I +  P +NT  + +    N ++  L AI  +   T 
Sbjct: 697  VLS-NQGGYYRSQAYISEARRMGINVEGPDINTSRICYHAQGNTLFIGLMAIANLKEQTR 755

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS-RMQLLQSLDNI 908
             + + E      F  L+D  +R+D     R    SLV +G  D  G   R    + L  +
Sbjct: 756  MQILAERRKGGLFFDLKDASTRLDL---CREDWVSLVESGCCDSLGRQYRRS--EQLRIL 810

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
               A+   +   +    +FA EK       +L    V+++      E   LGF  S HPL
Sbjct: 811  LTNAERTTR---SDQLELFAPEKHIPGQTRSL--VQVKHTEDELHREFSALGFLRSYHPL 865

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             ++   L+ +      E  +   G  + L    ++++Q  T+ G  + +V+F +    YE
Sbjct: 866  LLWSSYLQGLKRVRASEL-SQYVGRYVNLIGYQITQKQVMTKTGESMSFVSFEDETALYE 924

Query: 1029 ANFFP 1033
               FP
Sbjct: 925  TVLFP 929


>gi|284045697|ref|YP_003396037.1| DNA polymerase III subunit alpha [Conexibacter woesei DSM 14684]
 gi|283949918|gb|ADB52662.1| DNA polymerase III, alpha subunit [Conexibacter woesei DSM 14684]
          Length = 1268

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 249/965 (25%), Positives = 415/965 (43%), Gaps = 111/965 (11%)

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRE 197
               EGL+ L+G ++             +   RLL       D L+V LQ  +   DR R 
Sbjct: 240  AHAEGLVCLSGCAA--------HGVHDLDSLRLLR-HAFGRDHLFVELQRPYLRDDRARN 290

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--QKDRPRVTPDHYLK 255
             ++ Q A   EL  VAT N+   +       D L+AV   T +   +  R      H L 
Sbjct: 291  RRLQQFARELELRCVATGNTHAHARSRGPLQDALVAVRLHTTLDASEPGRRG-NFSHVLT 349

Query: 256  NRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
            +   M + F+ D P+A+  T  +A R  F L           E E  + +      L   
Sbjct: 350  SPQAMAARFAADHPDAVAETARLADRLRFDLTQGLGYRYPGAEDESANRR------LAEI 403

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
                L VR    + A    A    +RLD EL +I ++  +G+FL+  + ++ A++  + V
Sbjct: 404  CGDRLAVRYDDASAADRAEA---HRRLDQELRIIDKLGLAGFFLLHREMLELAREVAVEV 460

Query: 375  ------------GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
                        G GRGS   S+  Y   ++ +DP+   L   RFLN D  ++PD D+DF
Sbjct: 461  RGPDTARSLLPPGRGRGSSVSSIVCYLTGLSHVDPVANDLFIGRFLNEDLTALPDIDLDF 520

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
             +D R+ +I  + + +GH   A +  F + +A+ A+R++G+AL +P  +++R+ +     
Sbjct: 521  PRDVRERLIPRIHDVFGHRNSALVAAFPTYRARGAIRELGKALGLPPGEIERVARGSEGW 580

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
             A  V   A    +   E RLA      L  ++++  GL RH S H+ G+V+  RPLS  
Sbjct: 581  SARDV---ARDVATALGERRLASGRWLWLARLAEQAHGLPRHLSQHSGGMVVATRPLSDC 637

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
             P+         + Q++      AG +K D LGL  L+ ++++++ +AQ R  ++DLS I
Sbjct: 638  CPIVPAAMEGRQIVQWDKDSCADAGFLKIDLLGLGMLSAVERAVEAIAQTRDERIDLSRI 697

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--V 659
            P+DD  TY  +    T G+FQ+ES     +L   +P  +E++   V++ RPGPI      
Sbjct: 698  PYDDRPTYEAIQNAETTGVFQIESRAQMASLRRTRPASLEELTIQVAIVRPGPIQGGAVN 757

Query: 660  VYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
             Y  R+          I   HP +   LKET G II+Q+QV+++A   +G++  +A+ LR
Sbjct: 758  PYIERRQRLRVDPGFTIPYDHPSLVEPLKETLGTIIFQDQVIEVAMAFAGFTPGQAEGLR 817

Query: 715  RAMGKKIKE-EMDKQKERFISGASKNGIS--KTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            RAM +K  E  ++    RF++GA          +A  +F+++  F+ +GF K+H AA+ +
Sbjct: 818  RAMSRKRSEAAIEAHHRRFVAGALATHDDVTPELAERVFQMVRGFSGFGFPKAHGAAFGL 877

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQ+ W++ HYP EFL A +  +            +A++  I+++ P +N   V+  V 
Sbjct: 878  LAYQSTWLRVHYPTEFLCALLNEQPMGFYPPDALVHEAQRRGIEVLAPEINASEVECTVE 937

Query: 832  DN-------------------------------------------RIYYSLAAIKGVGTT 848
                                                         R+   L  ++GV   
Sbjct: 938  VGPPAGSAPPAGSALPNRAGLLVPQTSRPALIPPTAPTAPDPPSPRVRIGLGYVRGVQDH 997

Query: 849  TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQSLD 906
             AR ++EA  A  PF  + D  +        R  LE+L ++GA D   G  R   L  L 
Sbjct: 998  DARALVEARAAGGPFRDVADLAA---RAGAGRPALETLAWSGACDALAGGDRRVALWRLG 1054

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                        R      +      T      L      +  +    +    G     H
Sbjct: 1055 VAVP------GRRVPGGTQL--ALPLTLPGAPELRALGEWDGML---ADYDTTGLTARTH 1103

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            PL + +P L   G     +  +      +R+A MVV++Q+  T  G  I ++   +    
Sbjct: 1104 PLRLLRPSLPA-GTVASRDLASLPHNAQVRVAGMVVARQRPGTASG--IVFLLIEDEHGT 1160

Query: 1027 YEANF 1031
                 
Sbjct: 1161 VNLVV 1165



 Score =  106 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 16/121 (13%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           S+V L  HS++S L+GA   + +    A     A+A+TD +N+  A+EF++ A A G++P
Sbjct: 4   SYVELHAHSAFSFLDGASLPDELAAAAAELGHEALALTDHDNICGAMEFARSAQALGLRP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I G +L +D                    + LLV +  G++ L  L++  +   +G   V
Sbjct: 64  IHGAELTLDDG----------------RHLTLLVESEHGWRNLCRLITLAHAHTRGADRV 107

Query: 130 R 130
            
Sbjct: 108 P 108


>gi|295839717|ref|ZP_06826650.1| DNA polymerase III, alpha subunit [Streptomyces sp. SPB74]
 gi|295827626|gb|EFG65512.1| DNA polymerase III, alpha subunit [Streptomyces sp. SPB74]
          Length = 904

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 243/913 (26%), Positives = 396/913 (43%), Gaps = 61/913 (6%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             P F HL+  S  S   GA     +  + A     A+A+TD + +   + F++     G
Sbjct: 8   SGPGFAHLRAVSGNSARYGASHPEALAARAAERGMDAVALTDRDTVAGTVRFAKACAEHG 67

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTP----------FPTVPSIVLLVST-AEGYQRLIEL 115
           ++P+ G  L +D          G               + P    L    A G+  L  L
Sbjct: 68  VRPLFGADLAVDAPAARDARGGGGRRRAPVRGGAFVDESAPRATFLARDGARGWASLCAL 127

Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           V+  +    G +   + L W    G EGL +L G  S  I RA        A + L  ++
Sbjct: 128 VTAAH---AGGERPPL-LPWDANQG-EGLTVLLGPES-DIGRALAAGRPDRAARLLAPWR 181

Query: 176 KLFGDRLYVNLQRHR----GYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
           + +GD L +    H     G    R + + V  A    +  V TN   +         DV
Sbjct: 182 ERYGDALRLEAVHHGRDGTGPGSLRLAARTVGFAAEQGIRPVLTNAVRYADPGQGRIADV 241

Query: 231 LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL-----------PEALENTVEIAR 279
           L A     V     +   + + +LK+   M      +              L +T   A 
Sbjct: 242 LDAAR-RLVPIDPAKGLDSGERWLKDAGRMAREAERITTAAGFGPGAAGALLAHTARTAA 300

Query: 280 RCSFILQVHAPILP-RFIEKECDDIQ-KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
            C    +    +   RF E        +  +  L ++A AG+ VRL      +G  A+ Y
Sbjct: 301 ECLVDPEDDLGLGSVRFPEPRLVGAGARTAQRALASRAAAGM-VRLGHD---RGPGARAY 356

Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            +R+  EL++IA   F+ YFL VA  +   +   I V   RGSGAGS+  + + I   DP
Sbjct: 357 WERMHHELDIIAHHDFASYFLTVARVVDDVRDLGIRVA-ARGSGAGSLVNHLIGIAHADP 415

Query: 398 LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
           +   LL ERFL+  R  +PD DID    RR EV R +  ++G ERVA +    + + + A
Sbjct: 416 VEHGLLMERFLSKRRSVLPDIDIDVESARRIEVYRAILGRFGPERVATVAMPETYRVRHA 475

Query: 458 LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
           +RDVG AL +  + +DR+    P+  A      A+ +                  E+ + 
Sbjct: 476 IRDVGAALSLDPADIDRIATAFPHIRARDART-AMDELPELASVAAEREKYGTFWELVEG 534

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
           L+ L R  + H  G+++ D  L    P+       LP+ QF+ + +E  GL+K D LG++
Sbjct: 535 LDALPRGVAMHPCGVLLSDASLLSRTPVVPTSGEALPMAQFDKEDVEDLGLLKLDVLGVR 594

Query: 578 TLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             + +  +L +     G   D+  IP  D +TY L+ +  TLG FQ+ES G R  +  +Q
Sbjct: 595 MQSAMAHALSELDRATGEAPDIDAIPPGDEKTYQLIRSTETLGCFQIESPGQRDLVGRLQ 654

Query: 637 PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
           P    D++  +SL+RPGP+  D +  +   ++G+  +   HP + P L++T GV+++ EQ
Sbjct: 655 PSTFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRYPHPDLAPALEDTYGVVVFHEQ 714

Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
           V+ +   ++G    EAD +RR +     +   + +  F   A++ G         +E++ 
Sbjct: 715 VIDLVHTMTGCGRDEADRVRRGLS--DPDSQGRIRFWFAQRAAERGYDAETVTRTWEIVE 772

Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
            F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+ ++
Sbjct: 773 AFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRDV 831

Query: 815 QIMPPSVNTPCVDFKVG----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            I+P  VN      ++              +   LA + G+       I  A   +P+ S
Sbjct: 832 PILPVDVNHSAPAHRIELVSEEGPPAARWGVRLGLADVHGMSEAEGERIATA---QPYTS 888

Query: 865 LEDFCSRVDSKKL 877
           L DF  R    + 
Sbjct: 889 LLDFWQRARPSRP 901


>gi|317133724|ref|YP_004089635.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7]
 gi|315450186|gb|ADU23749.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7]
          Length = 1347

 Score =  583 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 271/930 (29%), Positives = 446/930 (47%), Gaps = 87/930 (9%)

Query: 165  QVAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
            + A K  L + +LF  +  ++ LQ H    ++Y   ++  +A    +P V  N++ +  +
Sbjct: 304  ENARKEALYYSELFGKNNFFIELQFHGFEDEQYVFPRLCNIAKGLNIPCVPANDAHYTYK 363

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF------SDLPEALENTVE 276
             D +  ++L+A +   ++   D    +   ++K+  E+           D+ +A EN   
Sbjct: 364  TDAKRREMLVADSFKKIIETLDER--SCQLFIKSDEELTEALTQILTKKDVEQAFENLRL 421

Query: 277  IARRCSFILQ-VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG-YHA 334
            IA  C+ +L   H   +    E E D       + +R   + G+E R   G  + G    
Sbjct: 422  IADNCNVVLPKEHHYPVYHLPEGETDS------SYIRKLVLEGVEKRYPGGKASDGTVWD 475

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK--------NNIPVGPGRGSGAGSVT 386
            Q++  R++ EL +I +M ++ Y L+V D++ + +K            +GPGRGS  GS+ 
Sbjct: 476  QEHINRMESELEIIGKMGYNHYHLVVQDYLNFGRKLGFNCPEGVGYTIGPGRGSAVGSLV 535

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
             Y L ITD+DPL+++L FER+LNP+R+SMPD D DF    R++ I Y++ KYG E V  +
Sbjct: 536  CYLLGITDLDPLKYNLFFERYLNPERVSMPDIDADFANFVREDCIDYMREKYGVEGVCGV 595

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDR---LCKLIPNDPAHPVSLQAIADDSR------ 497
             T G+L  KAA+   GR     +  V R   + KL+P    H   L  +AD S+      
Sbjct: 596  TTKGTLGIKAAILLAGRVNPKTHDDVQRVRAISKLVPKGAKHFTDLIDVADKSKGDIKSF 655

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD-RPLSQLVPMYRDVRSDLPVT 556
                  A     +++E +  +EGL  +   HAA ++I D   +S  V +           
Sbjct: 656  MLSKYSAGSIERQIIEDASSVEGLTVNYGRHAAAVIISDTGNVSDQVALM--STGGAWAV 713

Query: 557  QFNMKWIE-KAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLL-T 613
            Q   +  E + GL+K DFLGL  L ++  +L  +      K++++     + E +  + +
Sbjct: 714  QCTKEEAEAEVGLLKMDFLGLINLDIITATLRKIYRNTRRKINMNTDVHFEDEVFEGIFS 773

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
            T  T  +FQ  S GM+Q L+  +P   EDII LV+ YRPGP+  +      K+G++    
Sbjct: 774  TGNTDAVFQFSSDGMKQMLKEFRPSSFEDIILLVAAYRPGPMQYLSDIIAVKHGRKPESY 833

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE--------M 725
              P + P+L  T G  +YQEQV +I + L+GYSL +AD++RRAM KK  +E        +
Sbjct: 834  AIPELKPILNGTYGKTVYQEQVQEIFKKLAGYSLGQADLVRRAMSKKKLKELAKEKESFL 893

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
                ER I G   NGI++  A  +F+ +  FA Y FNKSHAAAYA ++YQTAW+K HYP 
Sbjct: 894  HGDPERGIKGCIANGINEADANILFDEMMDFASYAFNKSHAAAYAYVAYQTAWLKYHYPT 953

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            E++AA M  E    +K+  +  ++R   + +  P +N   V F    + I +  + +KGV
Sbjct: 954  EYMAAVM--EHSKYDKLPMYIYNSRDMGLTVKIPDINKSDVGFIAEKDSIIFGFSGMKGV 1011

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL--- 902
            G      I+E      F SL++F SR +    +   L++LVF GA DCFG +R  +    
Sbjct: 1012 GDVDIEKIIEERKKGEFKSLKNFISRTNL---SIDTLKNLVFGGAFDCFGQTRKSMFSYV 1068

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV----------------- 945
            +SL +I+   + ++       E +  +E  +  DK  L +                    
Sbjct: 1069 ESLKDIKSEIESIQSKIDVLTEKM--NEDASEKDKKKLRELEKNCDEYKTKYQDLICEQG 1126

Query: 946  -ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
             E+   R   E+ +LG + S HP++ YK           ++      GN+I +  ++   
Sbjct: 1127 YEDKIGRLTAERNILGTFISDHPINSYKLE----NSVKIKDLQP---GNDITVYGLITDF 1179

Query: 1005 QQKKTRK--GSRIGWVTFSEPAKEYEANFF 1032
             +  T+K  G         +     +A  F
Sbjct: 1180 -RLLTKKSTGENFCSFNLDDGTGVIQAMVF 1208



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 23/179 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+  S+ +GA +   ++ +      PA+ +TD   L    EF        I+ I G 
Sbjct: 9   LHNHTDNSIKDGAQTPKELVQRAKELDAPAVTLTDHGVLTGIFEFMNACEEENIKGIPGV 68

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-----DQGKQS 128
           +  I            +    T   +V+L   A+GY+ + + V+             K  
Sbjct: 69  EAYIK-----------EDEDETRRHLVILAKDAQGYKAIEKAVTESNQRLVTIPSMKKDI 117

Query: 129 VRICLSWLQEI------GTEGLIMLTGGSSGPID-RAFFFNSSQVAEKRLLTFKKLFGD 180
             +  + L +       G +  I  +    G I       N  Q    + L  +K + +
Sbjct: 118 PTMNKAILTKWFGEGAMGHDHTIATSACVQGVIATELTQNNKYQKNIDKALEKRKNYHN 176


>gi|213027544|ref|ZP_03341991.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 533

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 235/525 (44%), Positives = 340/525 (64%), Gaps = 22/525 (4%)

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
           R  +       V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RP   
Sbjct: 8   RQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNY 67

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
           +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++    LP+F   +        E
Sbjct: 68  SPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTE 122

Query: 309 NELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
           + L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQ
Sbjct: 123 DYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQ 182

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           W+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC +
Sbjct: 183 WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME 242

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           +RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP  
Sbjct: 243 KRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGM 302

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+
Sbjct: 303 TL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPL 361

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSL 600
           Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ 
Sbjct: 362 YCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAA 421

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV- 659
           IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + + 
Sbjct: 422 IPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMV 481

Query: 660 -VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQI 698
             + +RK+G+E++        H  + P+L+ T G+I+YQEQVMQI
Sbjct: 482 DNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQI 526


>gi|312129356|ref|YP_003996696.1| DNA polymerase iii, alpha subunit [Leadbetterella byssophila DSM
            17132]
 gi|311905902|gb|ADQ16343.1| DNA polymerase III, alpha subunit [Leadbetterella byssophila DSM
            17132]
          Length = 1014

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 246/1030 (23%), Positives = 431/1030 (41%), Gaps = 112/1030 (10%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L  HS +SL  G + L  ++ +        +A+TD N +    +F +    AGI+P++G
Sbjct: 2    YLNCHSYHSLRYGTIPLEELVAEAKRCGVKTLALTDINTVTGIYDFEKACKDAGIKPVVG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             ++  + Q                   + L   A+G + +  L++           +   
Sbjct: 62   MEVRKEDQ----------------LLYIALAQNAQGIKEICTLLTEHNCEGTPLLPIAPE 105

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
               L  +       L        +R +           +    + + DR+          
Sbjct: 106  FKHLFTVYP-----LENCPPTLRNREYLGIRPDEIHSLIRPELRAYLDRM---------- 150

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
                               V      F  E +Y+ H +L A+  + V+S+ D    + + 
Sbjct: 151  -------------------VVLAPVTFRDENEYQLHRILRAIDKNVVLSKLDHFCKSHE- 190

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            Y++   E+  ++   P+ ++NT  I  +CSF      P   +      +    E+   L 
Sbjct: 191  YMRPEQELKELYKQYPQIIQNTQYILDQCSFSFDFKTPKNKKHFTSSLE----EDRLLLE 246

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
              A  GLE R        G    +   RL  EL VI  ++F+ YFLI  D ++++     
Sbjct: 247  KLAYEGLEKRY-------GTENAEASARLKKELQVIHALRFNSYFLITWDIVRFSNSQGF 299

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             +  GRGSGA S+ +Y L IT+I P+   L FERFLN +R S PDFDID+    RD ++ 
Sbjct: 300  -LHIGRGSGANSIVSYCLGITNICPIELDLYFERFLNLNRKSPPDFDIDWSWKERDIILD 358

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            Y+  KYG   VA   T    + ++ LR+VG+   +P  ++D L                 
Sbjct: 359  YIFKKYGKHHVAFCGTNVEFKYRSILREVGKVFGLPKEELDVLTNSP------------- 405

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                  +     +  V ++      LE      S HA GI+I + PL+    +    +  
Sbjct: 406  ------QSTHDQNSVVQQIHFYGSLLEKFPNQRSMHACGILISEEPLTTYSALEMPPK-G 458

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP---FDDHETY 609
             P+ QF+M   E+ GL KFD L  + +  +  S+  + +          P    D+ +  
Sbjct: 459  FPIVQFDMHVAEEIGLEKFDILSQRGIGHINDSVKLIRENQGIEVDIRNPALSKDEAQAN 518

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNG 667
              L+   T+G F +ES  MR  L  ++ D    ++A  S+ RPG   + ++  Y  R N 
Sbjct: 519  VYLSQGKTIGCFYIESPAMRGLLRRLKCDNYRTLVAASSIIRPGVAQSGMMREYIFRHNN 578

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK--EEM 725
              +    HP+ +  L ET G+++YQE V+++A    G + ++ D+LRRAM  K +    +
Sbjct: 579  PGQFEYFHPVFEEHLGETYGIMVYQEDVIRVALYYGGIAEADGDILRRAMSGKGRSLSAL 638

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             + K+ F++  +K G  + ++  ++  +  FA Y F K+H+A+YAV SYQ+ ++K +YP+
Sbjct: 639  QRVKDNFLASCAKQGHPEDLSREVYRQIESFAGYSFCKAHSASYAVESYQSLYLKVYYPL 698

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+ A +        + + +  +AR     I+ P VN   V+  +    IY     ++ +
Sbjct: 699  EFMVAVIN-NQGGFYRTEVYIHEARMSGGNILNPCVNKSKVETSIYGKDIYLGFMHLQSL 757

Query: 846  GTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
                   I +E   +  +  LEDF  RV         LE L+F GA    G S+ +LL  
Sbjct: 758  EARIMNEIVVERDRNGEYLDLEDFIKRVPV---GLEALEILIFIGAFRFTGKSKNELLVQ 814

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
               +   A                      S + TL K         F+ E  +LGF  S
Sbjct: 815  ARLLLTKAIIRAPELIQAP-----------SKEYTLPKLERSPFEDAFD-EIELLGFPVS 862

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
              P D+ K   +  G    ++ V       +++ A ++S++   T+ G+ + + T+ +  
Sbjct: 863  CSPFDLLKT--KYRGSVLVKDLVH-HHKKEVKMLAYLISRKHVPTKLGT-MYFGTWIDVE 918

Query: 1025 KE-YEANFFP 1033
             + ++   FP
Sbjct: 919  GQYFDTAHFP 928


>gi|197294579|ref|YP_001799120.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
           australiense]
 gi|171853906|emb|CAM11869.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
           australiense]
          Length = 918

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 275/909 (30%), Positives = 468/909 (51%), Gaps = 66/909 (7%)

Query: 18  SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDI 77
           S YSLL+  L L  ++ K   +    +A++D  NL+    F Q      I+PI+G ++  
Sbjct: 9   SYYSLLDSLLPLEKLVLKAKENDYEFVALSDDYNLYGMPTFLQLCQKHDIKPILGLKI-- 66

Query: 78  DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
               N    NQ          +++     +G + LI+L +      Q      + L  ++
Sbjct: 67  ----NFLWKNQTGE-------LLVYAKNDQGIKNLIQLATASKKEAQS----HLHLEQIE 111

Query: 138 EIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR 196
            +G +  I++ G        + F  +     ++ L   K +F + +++ +     +    
Sbjct: 112 ALGKDLFIIICGLCPFWE--KIFVNDQKNEFQEVLEKLKTIFSE-IFLGISFQSFFLEKL 168

Query: 197 ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKN 256
              ++  +   E+P +  N + +   +  E + +L  + + T+ S+ D            
Sbjct: 169 SDNLIDFSTHFEIPCLPVNKTNYDDAKAQETYQILAKMKNKTIYSEIDL-------SFLT 221

Query: 257 RSEMVSIFSDLPEALENTVEIARRCSFILQVHA----PILPRFIEKECDDIQKE------ 306
           +SE    +   P+ +++  ++  + ++   +      P    FIEK+  D+ KE      
Sbjct: 222 KSEFDIRYQKYPQIMDSLKQLIPKINYQTPLKKNFSLPSYLDFIEKKEKDLPKEVVFEKP 281

Query: 307 ---------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                     +  L+     GLE  L           + Y QR++ EL +I  + +  YF
Sbjct: 282 EKKLFQNLDAKKYLKKIVYQGLEKFLN----PSKSKYEKYSQRINEELKIINDLNYENYF 337

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           LIV+D +++AKKNNI VGPGRGS +GS+  + L IT+IDPL+++L+FERFLNP R +MPD
Sbjct: 338 LIVSDLVKYAKKNNILVGPGRGSSSGSLVCFCLEITEIDPLKYNLIFERFLNPQRKTMPD 397

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D+DF  ++R+ VI+Y++ KYG   VA IITFGS   K A+            ++ +  K
Sbjct: 398 IDLDFPDNKREIVIQYIRQKYGLHHVANIITFGSFAKKNAI----------IKELLKFKK 447

Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
           L+P           + +    +     D  +  LL+I+  LEGL R   TH AGI++   
Sbjct: 448 LMPFQEKQ--LFHFLENQKPNQITDDLDDQIKNLLQIASFLEGLPRFTGTHPAGIILSKD 505

Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            L Q +P+ +    +L  TQ+  K +E  GL+K D LGL +LT++++ +  + +     +
Sbjct: 506 NLLQNIPLQKSNHLNLLQTQWEAKELETMGLLKIDLLGLHSLTIIEQIIAAIKESQKDFN 565

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           L  IP +D +TY LL+   TLG+FQLES   ++ L  M P+  ED++AL++L RPGPID+
Sbjct: 566 LFSIPLNDPKTYQLLSNAKTLGVFQLESGNAKKILTRMAPNNFEDLVALLALNRPGPIDS 625

Query: 658 IVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             ++   +N           LID +LK T GVI+YQEQ+MQIA L + YSL+EAD+ RRA
Sbjct: 626 FDLFLKNRNQFNSQKIYFDSLIDHILKPTHGVILYQEQIMQIASLFAKYSLAEADLFRRA 685

Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
           + KK K  + K+K+ F+    K G S +++  I++ + KFA+YGFNKSH+ AY++ISY+ 
Sbjct: 686 ISKKDKTVLLKEKKYFLEKTQKEGHSLSLSNQIYDYILKFANYGFNKSHSVAYSLISYRM 745

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
           A++KTHY +EF+   +   +++  + K   ++A Q  I ++ P++      +   +N+++
Sbjct: 746 AYLKTHYFIEFMTILLNDSLNDPLQTKALLKEAFQAGITLVKPNIFVSSDQYYFKNNQLF 805

Query: 837 YSLAAIKGVGTTTARHIMEASADKPFD-SLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             L+ IKGV +   + +++    K F  S ++F  R+    LN  +L +L+  GALD  G
Sbjct: 806 LPLSLIKGVNSNFCKELIQERHKKNFTLSFKEFKQRLFF-CLNETILTNLILGGALDQMG 864

Query: 896 YSRMQLLQS 904
            +R  L  +
Sbjct: 865 LNRKTLFHN 873


>gi|320532668|ref|ZP_08033463.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 171
            str. F0337]
 gi|320135114|gb|EFW27267.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 171
            str. F0337]
          Length = 806

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 221/780 (28%), Positives = 347/780 (44%), Gaps = 86/780 (11%)

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            +R     G   R   G   +   A      L+ EL VI  + F GYFLIV   +++  ++
Sbjct: 1    MRELTFQGATRRY--GTPQEHPRAWAV---LNHELEVIESLGFPGYFLIVHAIVEFCAQS 55

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I +  GRGS A S   YAL IT +D +R  +LFERFL+P R   PD D+D    RR+EV
Sbjct: 56   GI-LCQGRGSAANSAVCYALGITAVDAVRHQMLFERFLSPGRAGYPDIDLDIEACRREEV 114

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL 489
            I++V ++YG ER AQ+    S + ++A+RD  RAL  P    D   K +       P  L
Sbjct: 115  IQHVYSRYGRERAAQVANVISYRPRSAVRDAARALGHPAGVQDAWAKQMERWTSVRPGGL 174

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                DD             + +L+I++KL  L RH   H  G+V+  RP++++ P+    
Sbjct: 175  TGQGDD-----------VPEPVLDIAEKLLRLPRHLGVHPGGMVLCGRPVTEVCPVRWAA 223

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---------------- 593
              +  V Q++     +AGL+KFD LGL  LT L+ +   LA+R                 
Sbjct: 224  MDNRSVLQWDKDDCAEAGLVKFDLLGLGALTALRLAFTTLAERRQVVPDAVTEGELRTSQ 283

Query: 594  --VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                  L  +P +D   Y LLT   T+G+FQ+ES      L   +P    DI+  V+L R
Sbjct: 284  SGRPWGLHTLPEEDPAVYRLLTAADTVGVFQVESRAQMATLPRFRPRTFYDIVVEVALIR 343

Query: 652  PGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGPI    +  Y  R+  +E++  +H  + P L +T GV ++QEQ+MQIA   +G+S +E
Sbjct: 344  PGPIQGDAVNPYIRRRLKREEVTYLHDSLKPALTKTLGVPLFQEQLMQIAVDAAGFSPAE 403

Query: 710  ADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD LR+AM  K+  E MD  +++ I+G    GI    A  I+  L  FA++GF +SHA +
Sbjct: 404  ADTLRQAMGAKRSIERMDALRDKLIAGMMSRGIDSPTAEKIYSKLRSFAEFGFPESHAFS 463

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +A + Y +AW+K   P +F A  +  +       +    DA +  ++++P  +N      
Sbjct: 464  FAYLVYASAWLKVRKPEDFYAGVLAAQPMGFWSPQSLVADALRHGVRVLPADINRSLAQA 523

Query: 829  KVGDN-------------------------------RIYYSLAAIKGVGTTTARHIM-EA 856
             V                                   +   LA +KG+G   A+ I+ E 
Sbjct: 524  TVEQWEDHQDADRSDQWGPLRPHPAAPSALDVHDDLAVRLGLAPLKGLGERAAQAIVTER 583

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI-----QKY 911
             A  P+  L D   RV     +R  LE+L  +GALD  G  R Q L +   +     ++ 
Sbjct: 584  RAHGPYRDLADLARRVSL---SRSRLEALAVSGALDSLGTERRQALWAAGVLSDEHGRRR 640

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
                +         +     G  +               R   +  + G    G PL + 
Sbjct: 641  GTSHQGRGAWCQPTLPGTAVGARA-----PTLPAMTDRERQGADLSLTGVSTHGSPLRLL 695

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +P L   G+    +      G+ +R+A +V  +Q+  T  G  + ++   +       + 
Sbjct: 696  RPALAADGVLSAADLAGQEHGSRVRVAGVVTHRQRPHTASG--MIFLNLEDETGLLNVSC 753


>gi|300777212|ref|ZP_07087070.1| DNA polymerase III, alpha subunit [Chryseobacterium gleum ATCC 35910]
 gi|300502722|gb|EFK33862.1| DNA polymerase III, alpha subunit [Chryseobacterium gleum ATCC 35910]
          Length = 1024

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 252/1036 (24%), Positives = 460/1036 (44%), Gaps = 115/1036 (11%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H+ +SL  G +S+ +++      +   +A+TD N +    +F +     GI+P++G 
Sbjct: 3    LNCHTYHSLRYGTISVEDLVQLAVDYKLKVLALTDINTVTGIYQFYRLCQDNGIKPVVGV 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                                  V   + L    +G   +  L                  
Sbjct: 63   ----------------DVRVENVQYYICLAKNPKGIAEVNRL------------------ 88

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              L +   +G+ +     + P++  F   S Q   ++LL  + +      +NL       
Sbjct: 89   --LTDYNCDGISI--PKMNPPLEHCFVIYSLQNIPEKLLEHEFIGVRENELNL------- 137

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDH 252
                S++  L +     +V  +   F ++E+Y+ H VL A+  +T+ ++  ++     D 
Sbjct: 138  -LINSELKSLIHK----MVILHPVTFKTDEEYKLHKVLRAIDGNTLFTKLTEKDYCRKDE 192

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
               ++ +++S F   PE +ENT  I   CSF  + + P   ++      D ++ +   L 
Sbjct: 193  CFIDKKKLLSQFGHYPEIIENTKHIVNECSFDFEFNTPKNKKYFT----DSRENDFKLLS 248

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
              A  GL  R          ++Q  + R++ EL VI  + F GYFLI  D IQ++ +   
Sbjct: 249  QLAYEGLSKRYPD-------NSQLAKARVEKELKVIDELNFCGYFLITWDIIQYSNRMGF 301

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                GRGSGA S+ AY L ITDI PL   L FERFLN +R S PDFDID+    RD ++ 
Sbjct: 302  M-HVGRGSGANSIIAYCLGITDICPLELDLYFERFLNLNRKSPPDFDIDWSWKNRDVILE 360

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            Y+  KYG + VA   T    + K+  R++G+   +P  ++D+L K               
Sbjct: 361  YIFKKYGKDHVAFCGTNVEFKRKSRFRELGKVFGLPKDELDQLSK--------------- 405

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                + +E    +  V  + +  Q L G     S H+ GI+I + P++    +    + +
Sbjct: 406  ----KPKEQHDQNSVVQLIYKYEQLLVGFPNQRSMHSCGILISEEPITNYSALEFPPK-E 460

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPF--DDHETY 609
             P+ QF+M   E  GL KFD L  + L  ++ +++ +  +RG+ +D+       D+ +  
Sbjct: 461  FPIVQFDMHTAEDIGLEKFDILSQRGLGTIKDTVNLIKEKRGIHIDIEDTRISKDEIKCN 520

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNG 667
              L+   T+G F +ES  MR  L  ++ D  + ++A  S+ RPG   + ++  Y  R N 
Sbjct: 521  EYLSVGKTIGCFYIESPAMRGLLRRLKCDNYKVLVAASSIIRPGVAQSGMMREYIFRHNH 580

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK--EEM 725
              +    H + +  L ET G+++YQE V+++A    G S +  DVLRRAM  K +    +
Sbjct: 581  PGQFEYFHDVFEKELGETYGIMVYQEDVIKVAMHFGGVSAANGDVLRRAMSGKGRSLSAL 640

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             K K+ F     + G    ++  ++  +  FA Y F K+H+A+YAV SYQ+ ++K +YP+
Sbjct: 641  QKLKDDFFESCKRKGHPDQLSQEVYRQIESFAGYSFCKAHSASYAVESYQSLYLKVYYPI 700

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+ +++        + + +  +A+     I  P +N       V  + +Y  L  I+ +
Sbjct: 701  EFMVSAIN-NGGGFYRTEVYVHEAKMSGATIHNPCINLSEFHTTVYGSDVYLGLMHIEKL 759

Query: 846  GTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
              +  + I E    +  + SLEDF  RV+   +    L+ L+F GA    G  + +LL  
Sbjct: 760  EASIKQFIPEERKENGDYKSLEDFVKRVN---IGIETLQILIFVGAFRFTGKQKHELL-- 814

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
               I+      +     K  ++F   +  + +   +++   E++      E  +LGF  S
Sbjct: 815  ---IEARFLLSKNQYKTKIISLFDEPQKNY-ELPAIDRNPFEDAFD----EIEILGFPVS 866

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR------KGSRIGWV 1018
                D+ K   +  G    ++ +       +R+ A ++S++    +      K   + + 
Sbjct: 867  YSIFDLLKT--KHRGDVLVKDLL-KYHKKQVRMLAYLISRKHVPIKMKNHPGKKDDMYFG 923

Query: 1019 TFSEPAKE-YEANFFP 1033
            T+ +   + ++   FP
Sbjct: 924  TWIDVNGDYFDTAHFP 939


>gi|300778347|ref|ZP_07088205.1| DNA-directed DNA polymerase III alpha subunit [Chryseobacterium gleum
            ATCC 35910]
 gi|300503857|gb|EFK34997.1| DNA-directed DNA polymerase III alpha subunit [Chryseobacterium gleum
            ATCC 35910]
          Length = 1016

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 253/1033 (24%), Positives = 454/1033 (43%), Gaps = 116/1033 (11%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L  HS +SL  G LS+++++ + +A     + +TD N +    EF +K  + GI+P+ G
Sbjct: 2    YLNCHSYHSLRYGTLSIDDLVSQASALGINELVLTDINTITGVYEFKKKCESQGIKPVAG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                             +    +    + +     G   + ++++               
Sbjct: 62   I----------------EVRKGSKLLYIAIAKEFAGLGEVNKMLTEYNCDG-------TE 98

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L     +    +I                N+ +  ++             Y+ +      
Sbjct: 99   LPERPNLDHNFII------------YSLQNNPEGLKE-----------NEYIGI------ 129

Query: 193  DRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVT 249
             R  E  ++  +    L   +V      F ++++Y  H +L A+ ++T++S   +     
Sbjct: 130  -RQEELNLLIRSEYRNLISKMVILQPVTFGTKKEYNLHRILRAIDNNTLLSLLPENEICH 188

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               Y K+   ++  F   P+ +ENT  +  +CSF      P   +       D  K    
Sbjct: 189  KSEYFKSPQSLLDEFKYYPQIIENTKRLLSQCSFDFAFSTPRNKKHYTGTKADDLKL--- 245

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L   A AGLE R        G   +  + R++ EL VI  + FSGYFLI  D IQ++  
Sbjct: 246  -LTRLAYAGLEKRY-------GRKNEQAKLRVEKELKVIDELDFSGYFLITWDIIQYSNS 297

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                   GRGSGA S+ AY + ITDI PL   L FERFLN +R S PDFDID+   +RD 
Sbjct: 298  MGFM-HVGRGSGANSIVAYCIGITDICPLELDLYFERFLNLNRKSPPDFDIDWSWQKRDI 356

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            ++ Y+ N+YG + VA   T    + ++ +R+VG+A  +P  ++D L K            
Sbjct: 357  ILDYIFNRYGKDYVAFCGTNVEFKYRSIIREVGKAFGLPKEELDELSKN----------- 405

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                      E+   D  V ++ +  + LE      S HA GI+I + PL+    +    
Sbjct: 406  ---------PESVFRDEIVQKVQKYGKLLEKFPNQRSMHACGILISEEPLTNFTALEMPP 456

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPF--DDH 606
            +   P+ Q++M   E+ G  K D L  + L  ++ ++  +  +RG+KVD+       D+ 
Sbjct: 457  K-GFPIVQWDMYMAEELGFEKLDILSQRGLGTIKDTVRLIEEKRGIKVDIKDTALSKDEK 515

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
                 L+   T+G F +ES  MR  L  ++ D  + ++A  S+ RPG   + ++  Y  R
Sbjct: 516  ICNEFLSQGRTIGCFYIESPAMRGLLRRLKCDNYKVLVAASSIIRPGVAQSGMMREYIFR 575

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-- 722
             N   +    H + +  L ET G+++YQE V++IA    G S ++ D+LRRAM  K +  
Sbjct: 576  HNNPNQFEYFHKVFEEELGETYGIMVYQEDVIKIALHFGGLSAADGDILRRAMSGKYRSL 635

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E++ K K  F     + G S+ ++  ++  +  FA Y F K+H+A+YAV SYQ+ ++K +
Sbjct: 636  EDLQKVKNHFFESCRELGHSEELSREVYRQIESFAGYSFCKAHSASYAVESYQSLYLKVY 695

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP+EF+ +++   M    + + +  +A+    +I+ P VN    +  +  + IY  L  +
Sbjct: 696  YPLEFMVSAIN-NMGGFYRTEVYVHEAKMSGGKILNPCVNKSEYETTIYGDNIYLGLMLL 754

Query: 843  KGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            + V +  A+ I  E      + S+EDF  R+         L+ L+F GA    G  + +L
Sbjct: 755  EKVESKIAQLIPEERRKSGDYLSMEDFIKRIPV---GIETLQILIFIGAFRFTGIPKNEL 811

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L     +    +   + +T     +F      F     L +    N      +E  +L F
Sbjct: 812  LLKARVLLGEFKPEHRLQT-----LFDTPVKDF----KLPELK-RNVFEDAFDEIEILSF 861

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
              S  P D+ +   +  G     + V       +++ A +++++   T++G+ + + T+ 
Sbjct: 862  PVSCTPFDLLQT--KYKGQIMASDLV-KYHKREVKMLAYLIARKHVPTKRGT-MFFGTWI 917

Query: 1022 EPAKE-YEANFFP 1033
            +     ++   FP
Sbjct: 918  DVEGNYFDTAHFP 930


>gi|302518213|ref|ZP_07270555.1| LOW QUALITY PROTEIN: DNA polymerase subunit III, alpha [Streptomyces
            sp. SPB78]
 gi|302427108|gb|EFK98923.1| LOW QUALITY PROTEIN: DNA polymerase subunit III, alpha [Streptomyces
            sp. SPB78]
          Length = 895

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 206/719 (28%), Positives = 332/719 (46%), Gaps = 32/719 (4%)

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
            A  +G  A+ Y +R+  EL++I    F+ YFL VA  +   +   I V   RGSGAGS+ 
Sbjct: 76   ATTRGPKARAYWERMHHELDIIGHHDFASYFLTVARVVDDVRDLGIRVA-ARGSGAGSLV 134

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
             + + I   DPL   LL ERFL+  R  +PD DID    RR EV R +  ++G ERVA +
Sbjct: 135  NHLIGIAHADPLEHGLLMERFLSKRRSVLPDIDIDVESARRIEVYRAILGRFGPERVATV 194

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
                + + + A+RDVG AL +  + +DR+    P+  A      A+ +            
Sbjct: 195  AMPETYRVRHAIRDVGAALSLDPADIDRIATAFPHIRARDART-AMDELPELASVAAERE 253

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
                  E+ + L+ L R  + H  G+++ D  L    P+       LP+ QF+ + +E  
Sbjct: 254  KYGTFWELVEGLDALPRGVAMHPCGVLLSDASLLSRTPVVPTSGESLPMAQFDKEDVEDL 313

Query: 567  GLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K D LG++  + +  +L +     G   D+  IP  D  TY L+ +  TLG FQ+ES
Sbjct: 314  GLLKLDVLGVRMQSAMAHALSELDRATGEAPDIDAIPPGDERTYQLIRSTETLGCFQIES 373

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             G R  +  +QP    D++  +SL+RPGP+  D +  +   ++G+  +   HP + P L+
Sbjct: 374  PGQRDLVGRLQPSTFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRYPHPDLAPALE 433

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T GV+++ EQV+ +   ++G    EAD +RR +     E   + +  F   A++ G   
Sbjct: 434  DTYGVVVFHEQVIDLVHTMTGCGRDEADRVRRGLS--DPESQGRIRFWFAQRAAERGYDA 491

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                  +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +
Sbjct: 492  ETVTRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-R 550

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG----------DNRIYYSLAAIKGVGTTTARHI 853
                DAR+  + I+P  VN      ++              +   L+ + G+       I
Sbjct: 551  LLLADARRRGVPILPVDVNHSAPAHRIELVSENGPPAARWGVRLGLSDVHGMSEAEGERI 610

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
              A   +P+ SL DF  R    + +R V E L   GALD FG +R  LL  L  + +  +
Sbjct: 611  AAA---QPYTSLLDFWQRA---RPSRPVAERLAQVGALDAFGANRRDLLLHLAELHRMGR 664

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
                     H        G  +    L      + + R   E  VLG   S H +  ++ 
Sbjct: 665  GAA-----SHGTQLPLSGGRRTAPAGLPDL---DETERLSAELGVLGMDASRHLMGDHQE 716

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             LR++G+           G  + +A    + Q    R G R+ + T  + A   +  FF
Sbjct: 717  FLRELGVVSARRLREAPHGATVLVAGAKAATQTPPIRSGKRVVFTTLDDGAGLVDLAFF 775


>gi|146301508|ref|YP_001196099.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
 gi|146155926|gb|ABQ06780.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
          Length = 1018

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 253/1034 (24%), Positives = 434/1034 (41%), Gaps = 129/1034 (12%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L  HS +SL  G + +  ++    +    A+A+TD N +    +F +    AGI+P+IG
Sbjct: 2    YLNCHSFHSLRYGTIPVEELVQLAVSLGVQAMALTDINTVTGIYDFIKLCNTAGIKPLIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             +     Q                   + L    +G   +       +L         + 
Sbjct: 62   MEFRCRHQ----------------LHYIGLAKNTQGLAGMNR-----FLTGHNFDGTPLP 100

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L    EI     I                N+ QV  +             Y+ +Q     
Sbjct: 101  L-HAPEIADAFFI------------YPLENTPQVLRE-----------NEYIGIQP---- 132

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
                +  V+      +  +V      F S+ +Y+ H +L A+  + + S     R+ P+ 
Sbjct: 133  -EELQKLVLSEWKDRQHKMVVLQPVTFRSKTEYQLHKILRAIDLNVLGS-----RLKPED 186

Query: 253  YLKNRSEMVSI------FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +    M+ +      +   P+ + NT  I  +C+F      P   ++  +     ++ 
Sbjct: 187  CCRASDTMMRLEKLLFFYQHYPQIIANTEYIIEQCNFEFDYSTPKNKKYYTQN----RQT 242

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +   L   A  GLE R  +     G        R+  EL VI +++FSGYFLI  D I++
Sbjct: 243  DIELLTILAQQGLEWRYGKDNTEAG-------ARMIKELKVIDQLEFSGYFLITWDIIRY 295

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +      +  GRGSGA S+ AY L ITDI PL   L FERFLN +R S PDFDID+    
Sbjct: 296  SSSKGF-LHIGRGSGANSIIAYCLGITDICPLELDLYFERFLNLNRKSPPDFDIDWSWKE 354

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD ++ Y+ ++YG + VA   T    + ++  R+VG+   +P  ++D L K   N     
Sbjct: 355  RDVILEYIFSRYGADHVAFCGTNVEFKYRSIFREVGKVFGLPKEELDALAKNPMN----- 409

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                              +  V ++ +    LE      S H+ GI+I + P++   P+ 
Sbjct: 410  --------------LHPTNKVVRQVQQYGMLLEKYPNQRSMHSCGILISEEPITNYTPLE 455

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDLSLIPF 603
               +   P+  F+M   E  GL KFD L  + +  +  S+  + +     + +  + I  
Sbjct: 456  MPPK-GFPIVLFDMHTAEDIGLEKFDILSQRGIGHIDDSVKVIEKNTGIRINIRDTSISK 514

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            D+      L    T+G F +ES  MR  L  ++    + ++A  S+ RPG   + ++  Y
Sbjct: 515  DEALCNQFLAAGKTIGCFYIESPAMRGLLRRLKCGDYKTLVAASSIIRPGVAQSGMMKEY 574

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK- 720
              R N  +K    HP+    L ET G+++YQE V++IAQ   G   ++ D+LRRAM  K 
Sbjct: 575  IYRHNHPDKFEYFHPVFKEQLGETYGIMVYQEDVIKIAQHFGGLPAADGDILRRAMSGKG 634

Query: 721  -IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
              K  + K K+ F +  +  G  + ++  I+  +  FA Y F K+H+A+YAV SYQ+ ++
Sbjct: 635  RSKAALQKVKDNFFASCAAQGHPQALSAEIYRQIESFAGYSFCKAHSASYAVESYQSLYL 694

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K +YP+EF+ A +        + + +  +AR     I PP VN    +  +    IY   
Sbjct: 695  KVNYPIEFMVAVIN-NQGGFYRTEVYVHEARMSGGIIHPPCVNKSGYETTLYGKNIYLGF 753

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
              ++G+   TA  I E    +  + SLEDF +R+       ++L   +F GA    G ++
Sbjct: 754  MHLQGLEYKTAVMIEEERCKNGDYTSLEDFINRIPIGIEGVQIL---IFIGAFHFTGKTK 810

Query: 899  MQLLQSLDNIQ-----KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
             QLL     +        +         K   + A E+  F D                 
Sbjct: 811  NQLLVISRLLLVNYKPNSSSLKLIQEPAKEFQLPALERSLFEDAFD-------------- 856

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E  +LGF  S  P ++ +   R  G    ++ +       +R+ A ++S++   T+ G 
Sbjct: 857  -EIELLGFPVSCSPFELLQTSFR--GDVMAKDLLG-HHKKQVRMLAYLISRKHVPTKMG- 911

Query: 1014 RIGWVTFSEPAKEY 1027
             + + T+ +   E+
Sbjct: 912  AMYFGTWIDAQGEF 925


>gi|254387354|ref|ZP_05002606.1| DNA polymerase III alpha subunit [Streptomyces sp. Mg1]
 gi|194346151|gb|EDX27117.1| DNA polymerase III alpha subunit [Streptomyces sp. Mg1]
          Length = 936

 Score =  572 bits (1474), Expect = e-160,   Method: Composition-based stats.
 Identities = 236/844 (27%), Positives = 380/844 (45%), Gaps = 54/844 (6%)

Query: 215  NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF---------- 264
                +         D+L A     V     +P  + + +LK+ + M +            
Sbjct: 5    QPVRYADPGQGPVADILDAAR-RLVPVDPRKPLDSGERWLKDPAAMAAAADRIAQAAGLR 63

Query: 265  -SDLPEALENTVEIARRCSFILQVHAPILP-RFIEKECDDIQ-KEEENELRNKAVAGLEV 321
             +D    L  T   A  C+   +    I    F E        +  +  L ++A AG+ +
Sbjct: 64   PADARRLLAETRRSAEACAVDPEDDLGIGSVHFPEAHLVGAGHRTAQRVLASRACAGMVL 123

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
            R   G  A       Y +R+  EL+VIA   F+ YFL VA  +   +   I V   RGSG
Sbjct: 124  RGYAGERA-------YWERMHQELDVIAYHGFASYFLTVAQVVDDVRTMGIRVA-ARGSG 175

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            AGS+  + L I   DP+   LL ERFL+  R  +PD DID    RR EV R + +++G E
Sbjct: 176  AGSLVNHLLGIAHADPVAQGLLMERFLSKRRHVLPDIDIDVESARRLEVYRRIIDRFGTE 235

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
            RVA +    + + + A+RDVG AL M  ++ DRL K  P+  A      A+A+    R+ 
Sbjct: 236  RVATVAMPETYRVRHAIRDVGAALSMDPAETDRLAKAFPHIRARDARA-ALAELPELRDV 294

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
            R       RL E+ + L+ L R  + H  G+++ D  L    P+        P++QF+  
Sbjct: 295  RGR--ERGRLWELVEALDALPRGIAMHPCGVLLSDASLLARTPVVPTSGEGFPMSQFDKD 352

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLA----QRGVKVDLSLIPFDDHETYHLLTTKGT 617
             +E  GL+K D LG++  + +  ++  L     +     D + +P  D  TY L+ +  T
Sbjct: 353  DVEDLGLLKLDVLGVRMQSAMAHAVAELRRATGEELDLDDPAQVPPGDGSTYELIRSAET 412

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIH 675
            LG FQ+ES G R  +  +QP    D++  +SL+RPGP+  D +  +   ++G+  +   H
Sbjct: 413  LGCFQIESPGQRDLVGRLQPSTFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRFPH 472

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
              +   L+ET GV+++ EQ+++I  +++G    EAD +RR +     E   + K  F + 
Sbjct: 473  EDLADALRETYGVVVFHEQIIEIVHVMTGCGRDEADRVRRGLS--DPESQGRIKVWFAAT 530

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A+  G S  +    +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +
Sbjct: 531  AAGRGYSPEVIGRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHD 590

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-------DNRIYYSLAAIKGVGTT 848
                 K +    DAR+  + ++P  VN   V  ++           +  +LA + G+   
Sbjct: 591  PGMYPK-RLLLADARRRGVPVLPLDVNRSAVAHRIELVSDVPPLWGLRLALADVHGISEA 649

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I    + +P+ SL DF  R       R V E L   GALD FG +R  LL  L  +
Sbjct: 650  EAGRI---ESGQPYASLRDFWDRAH---PGRPVAERLAQVGALDAFGANRRDLLLHLTEL 703

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
               AQ     R +    +     G  +  + L   +    + R   E  VLG   S H +
Sbjct: 704  H-GAQRAAGARGSGQLPLGG---GKSTAAVGLPDLT---DTERLSAELGVLGMDASRHLM 756

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
              +   L ++G+        T  G  + +A    + Q    R G R+ + T  +     +
Sbjct: 757  GDHHAFLAELGVVPARRLRETEHGQTVLVAGAKAATQTPPIRSGRRVIFTTLDDGTGLVD 816

Query: 1029 ANFF 1032
              FF
Sbjct: 817  LAFF 820


>gi|300779106|ref|ZP_07088964.1| DNA polymerase III subunit alpha [Chryseobacterium gleum ATCC 35910]
 gi|300504616|gb|EFK35756.1| DNA polymerase III subunit alpha [Chryseobacterium gleum ATCC 35910]
          Length = 1016

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 243/1032 (23%), Positives = 443/1032 (42%), Gaps = 114/1032 (11%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  HS +SL  G +S+ +++ +        +A+TD N +    +F +      I+PI+G 
Sbjct: 3    LNCHSYHSLRYGTISIQDLVQQAVHFNIKTLALTDINTITGIYDFYKLCQEYNIKPIVGV 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                            +         + L    +    +  L++                
Sbjct: 63   ----------------EIRVQDELYYICLAKNQKSIAEVNRLLTAYN------------- 93

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                                 I +A    +       L    +   D  ++ +++    D
Sbjct: 94   ----------------CEGIEIPKANPDFTDTFVIYPLENIPEQLADHEFIGIRK----D 133

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +       +L       +V  +   F + E+YE H +L A+  +T++S+        D+ 
Sbjct: 134  QLNLLIQPEL-KPFIHKMVILHPVTFTTPEEYELHKILRAIDLNTLISKLTEAHYCKDNE 192

Query: 254  LKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +   + ++++ F   P+ +ENT  I   C F      P   +       D ++ +   L+
Sbjct: 193  MFTDKKKLLAQFQHEPQIIENTKYIVNTCHFDFDFSTPKNKKHFT----DSRENDFELLK 248

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
              A  GL  R ++  +         ++R+D EL VI ++ F  YFLI  D IQ++ +   
Sbjct: 249  KLAYEGLSKRYSEDNLQA-------KERVDKELAVIDQLNFCAYFLITWDIIQYSNRMGF 301

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                GRGSGA S+ +Y + ITDI PL   L FERFLN +R + PDFDID+    RD ++ 
Sbjct: 302  M-HIGRGSGANSMVSYCIGITDICPLELDLYFERFLNLNRKTPPDFDIDWSWQTRDIILE 360

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL-CKLIPNDPAHPVSLQA 491
            Y+  KYG + VA   T    + ++  R+VG+   +P  ++D L  K I            
Sbjct: 361  YIFGKYGKDHVAFCGTNVEFKYRSIFREVGKVFGLPKEELDMLVTKPI------------ 408

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                    +   ++    ++    + LE      S H+ GI+I + P++    +    + 
Sbjct: 409  --------QEHDSNSVSRQVHYYGKLLEKFPNQRSMHSCGILISEEPITNYSALEMPPK- 459

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPF--DDHET 608
              P+ QF+M   E+ GL KFD L  + L  +  ++  +  +RG+ +D+       D+ + 
Sbjct: 460  GFPIVQFDMYTAEEIGLEKFDILSQRGLGTINDTVKLVKEKRGIDIDIRDTSLSKDEAQC 519

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKN 666
               L++  T+G F +ES  MR  L  ++ D  + ++A  S+ RPG   + ++  Y  R N
Sbjct: 520  NEFLSSGKTIGCFYIESPAMRGLLRRLKCDNYKVLVAASSIIRPGVAQSGMMREYIFRHN 579

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK--EE 724
               K    H + +  L ET G+++YQE V++IA    G S  + DVLRRAM  K +    
Sbjct: 580  NPSKFEYFHEVFEKELGETYGIMVYQEDVIKIALHFGGLSAPDGDVLRRAMSGKGRSLSA 639

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + K K+ F     + G  + +++ ++  +  FA Y F K+H+A+YAV SYQ+ ++K ++P
Sbjct: 640  LQKVKDNFFKSCKRLGHPEKLSMEVYRQIESFAGYSFCKAHSASYAVESYQSLYLKVYFP 699

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ +++        + + +  +AR     I  P VN       V  + +Y  L  I+ 
Sbjct: 700  IEFMVSAIN-NGGGFYRTEVYIHEARMSGAAIHNPCVNLSEYQTTVYGSDVYLGLMHIER 758

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +    A+ I E    +  + SLE+F  R+    +    L+ L+F GA    G  + +LL 
Sbjct: 759  LELKLAQLISEERNQNGEYTSLENFVKRIP---IGIETLQILIFIGAFRFTGKQKHELL- 814

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN-EQRVLGFY 962
                         +     H+  F H       +   +  S+E +       E  +LGF 
Sbjct: 815  ----------IESRFLLGTHKVPFRHLTLLDEPQKDYQLPSIERNRFEDAFDEIEILGFP 864

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             S  P D+ +   R  G    ++ +       +++ A ++S++   T+KG+ + + T+ +
Sbjct: 865  VSFSPFDLLQT--RYRGSVLVKDLL-KFHKCQVKMLAYLISRKHVPTKKGT-MYFGTWID 920

Query: 1023 PAKE-YEANFFP 1033
               E ++   FP
Sbjct: 921  AEGEYFDTAHFP 932


>gi|203454755|ref|YP_002225071.1| gp192 [Mycobacterium phage Myrna]
 gi|197311803|gb|ACH62161.1| gp192 [Mycobacterium phage Myrna]
          Length = 1138

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 259/1124 (23%), Positives = 464/1124 (41%), Gaps = 128/1124 (11%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +  +V L  H   S L+G      I+++       A+++TD + +   +        AG
Sbjct: 4    SNADYVALHNHGDTSFLDGRARHEEIVERAVELGNEAVSLTDHDEVNGHINMWNLCQKAG 63

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+ + G +    M  + + + +  T       I LL    EG + L  L S  Y      
Sbjct: 64   IKFVPGAEQRWLM--DPEESRRLSTSGYDYSHICLLAENNEGLKNLWTLSSLAYEPGNFY 121

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            +  ++    +++  + GL    G            +  + A +       +FGDR Y  L
Sbjct: 122  RYPQLNPPLMKQYAS-GLWASDGCGLTRFAGYIEEDDEESARQEWAVLLDIFGDRFYSEL 180

Query: 187  QRHR----------GYDRYRESQV-------VQLAYTHELPLVATNNSLFLSEEDYEAHD 229
               +            +R   +++       V+ A    +PLV  N++ +  E D++ H 
Sbjct: 181  HTFKFLESEDRPLDAKEREINAKITKMNHAKVRFAQEMGVPLVVVNDAHYAWERDWKQHR 240

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF-------SDLPEALENTVEIARRCS 282
            ++  +       Q +      D ++ +  E+V          S + EA++NT  IA  C+
Sbjct: 241  LVWKMNTKNKKDQSEGNAHAAD-WMMSADELVHYMGLHGISRSIVEEAVKNTRMIADSCT 299

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
              ++      P        D  +E+          G +         KG   + YR RL+
Sbjct: 300  VEIK------PTINMPRLHDTDEEDRAAFLRSCEEGFKR----FVTDKGLDEETYRARLE 349

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA-------------GSVTAYA 389
             E  +I    F GYF +V+D++  A+          G+               GS+  Y 
Sbjct: 350  REQKLIIDKDFYGYFNVVSDYMLAARSGEYIKWVKPGAKPKPCICGPGRGSGGGSLVNYL 409

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L IT +DP+++ L FERF+NPDR   PD D+DF +  R +++ Y+  +YG ++V  I T 
Sbjct: 410  LGITSLDPIKYDLSFERFINPDRPDFPDIDVDFQKSHRKDLLGYMAARYGGDKVVAIGTK 469

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIP-------------NDPAHPVSLQAIADDS 496
                   A++D+ +AL + +     + KLI               D   P   + +    
Sbjct: 470  AKSGPARAIQDLCKALGIDFKDSLAMSKLIKKVDFSDTNDYEVNPDYVPPTWEETLELIG 529

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS-DLPV 555
               +  +   +   L   +Q + GL R A  HAAGI +   P+    P  R   S D PV
Sbjct: 530  GELQPYMEKYADTGLFRYAQDMVGLSRQAGVHAAGIFMDTDPILGKAPTRRKGGSPDAPV 589

Query: 556  -TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV------------------ 596
             TQF+M+ +   G +K DFL  K L +L  + D + +R  K                   
Sbjct: 590  ATQFDMEEMAWLGAVKMDFLSNKGLDVLSIARDLIWERHGKWIDYDGFLYGAPPEGAEII 649

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI- 655
             +    + D   +  +    T GIFQ+ +    +  +  +P  ++D+  LVS+ RPG + 
Sbjct: 650  HMDDDKYADPTIWEQIDLGHTAGIFQINTPSGTKQAKRFKPRNLKDLADLVSVNRPGVLR 709

Query: 656  --DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                +  Y  R++G+E+I   HPL++ +   T G+++YQE ++   +LL+ ++  E + L
Sbjct: 710  VPGLLDRYMRRRHGEEEITYDHPLLEQVTGHTMGILVYQEDLVAACRLLANFTPGEGETL 769

Query: 714  RRAMGKKIKEEMDKQKERFISGASKN------GISKTIAVNIFELLAKFADYGFNKSHAA 767
            R+A+GKK  + M   K +F+ G   N      G ++ +A  I++ +   A Y FNK+HA 
Sbjct: 770  RKAIGKKKLDLMQSFKGQFLEGCMANREFTRQGGNRALAERIWQQMIASASYAFNKAHAM 829

Query: 768  AYAVISYQTAWMKTHYPVEFLAASM----TLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
             YA+ + Q  W+K HY  EF    +        D  +K   F ++ R+    ++PP VN 
Sbjct: 830  GYAMQAVQEIWVKAHYFQEFETGCLAVYGEDVKDGEKKSLVFLRECRRRKQPVLPPDVNQ 889

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK-KLNRRVL 882
                F + D+ I Y L  I G+G +    I+    ++P+  L+D+  R        R V+
Sbjct: 890  SQERFSLTDDGIRYGLIDINGIGPSVIPDII---KNRPYVDLQDYLDRTKKGLGGKRGVV 946

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            ++LV  GA D  G SR  +L  +       +  EK R +             +DKI  +K
Sbjct: 947  DNLVKIGAFDWTGQSRSDMLDQVYYHWCRMEIAEKKRNS--------ISVEETDKIVWDK 998

Query: 943  F---SVENSSVRFEN-------EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
            +     +    +F+        E+ ++G + +  P+  Y  ++    I+   +      G
Sbjct: 999  WRKNPDKFPRFKFDKPEVVQKIEEDLVGTFITRDPMGPYVSMIEGECIQHPTDMEDFRTG 1058

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTF----SEPAKEYEANFF 1032
                +   ++   + + R G  + ++T      +    +E   F
Sbjct: 1059 QRFVIGGELMRIHKHQARNGE-MAFLTVRWNEED----FEFLAF 1097


>gi|167717945|ref|ZP_02401181.1| error-prone DNA polymerase [Burkholderia pseudomallei DM98]
          Length = 716

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 209/727 (28%), Positives = 332/727 (45%), Gaps = 45/727 (6%)

Query: 144 LIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHRGYDRYRESQVV 201
           L  L G      I    +   + V + +L  F  LFG+R  + L Q  R  D     QV 
Sbjct: 6   LAHLRGVPDCFAILVPTYPARADVLDAQLAWFDALFGERARLGLVQLQRALDGAHREQVR 65

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEM 260
                  + +VA  +            D + A+     +++         + +L+ R  +
Sbjct: 66  AAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMPIAECGHALAPNGEQHLRTRQRI 125

Query: 261 VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
             +F    +AL  T  +   C F L       P  I            + L  +  AG  
Sbjct: 126 AQLFP--ADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----HTPTSYLAQETWAGAR 179

Query: 321 VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
            R   G           RQR++FEL +IA +K+  YFL V D +++A+  +I +  GRGS
Sbjct: 180 RRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVKYARSKDI-LCQGRGS 232

Query: 381 GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
            A SV  Y + +T+++P + +LLFERFL+ +R   PD D+DF   RR+EVI+Y+  KYGH
Sbjct: 233 AANSVVCYCIGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQRREEVIQYLYEKYGH 292

Query: 441 ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
           +R A      + + + ALR+ G+AL +    V+R+ K           L   A      E
Sbjct: 293 DRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGSRDLLARFASVGLDPE 352

Query: 501 ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
                P +    EI+ +L    RH S H+ G V+    L++LVP+         V Q++ 
Sbjct: 353 V----PLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDK 408

Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDLSLIPFDDHETYHLLT 613
             +E  GL+K D L L  L+ L ++ D +               L  IP DD  TY ++ 
Sbjct: 409 DDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRLEHIPQDDEATYDMIC 468

Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKE-- 669
              T+G+FQ+ES      L  ++P    D++  VS+ RPGPI       Y  R+      
Sbjct: 469 RADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGE 528

Query: 670 ---KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEM 725
              +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD LRRAM   K K ++
Sbjct: 529 AHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDL 588

Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A ++Y ++W+K H P 
Sbjct: 589 GKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFAKLAYASSWLKRHEPA 648

Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----------GDNRI 835
            FLAA +  +        +  QDA++  + ++P        +  +          G   +
Sbjct: 649 IFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASLEAQPGAAPPDGRPAV 708

Query: 836 YYSLAAI 842
              L+ +
Sbjct: 709 RLGLSLV 715


>gi|319777594|ref|YP_004137245.1| DNA polymerase iii alpha subunit [Mycoplasma fermentans M64]
 gi|238810015|dbj|BAH69805.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|318038669|gb|ADV34868.1| DNA polymerase III alpha subunit [Mycoplasma fermentans M64]
          Length = 967

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 280/1030 (27%), Positives = 459/1030 (44%), Gaps = 112/1030 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V+L   S Y+ L+  + +++++        PA+ ++D NN+F    F +      I+ I
Sbjct: 4    YVNLYNTSEYTFLDSLIRIDDLVRLSKEHNLPAVVLSDRNNMFGLGAFMEACLKYDIKGI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            I                 G          ++L    +GYQ++ +L+          Q   
Sbjct: 64   I-----------------GVDLDVDNYRFIVLAKNYQGYQKINQLI---------YQKSI 97

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                 + E+    LI+L     G                    +     D  Y   + + 
Sbjct: 98   NKAIEISELWNPNLIVLDHPRYG--------------------YYAQTKDNKYSASKNY- 136

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                Y  S    L  +  +       +      D E  + L       +   K       
Sbjct: 137  ----YINSSDASLPNSILIK-----ENKLFEASDNETLNYLQ--KLGNLEETKHYANYFD 185

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            +  + +            E ++    I   C+ I    A  L  F   +    +K   + 
Sbjct: 186  EVNVDS------------EIIDRIYSIINECNVIFPKKALHLAPFQNNDEATNEKLFVSL 233

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L+  A      RLA        +  D+ +RL++E NVI ++ +  YFLI+ D + WAK  
Sbjct: 234  LKAGA-----KRLASEL----KNYPDWNKRLEYEFNVIKKLGYINYFLIIQDLVNWAKSQ 284

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I +GPGRGS AGS+ +Y L IT+I+PLR++LLFERFLNPDR+S PD DID   DRR EV
Sbjct: 285  KIAIGPGRGSAAGSLVSYLLNITEINPLRYNLLFERFLNPDRVSWPDIDIDIQDDRRFEV 344

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
              Y+Q KYG ++   I TF ++ AK A+RD+GR + +    ++R+ K I +D        
Sbjct: 345  FEYLQKKYGVDKTGLISTFQTIGAKMAIRDMGRVMGISLIDINRISKTIKSDNLTD---- 400

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +D  F+      P    L + + K+EGL R  S HAAG +I    L   VP+     
Sbjct: 401  AYKNDIDFKIEMDNYPE---LYKHALKIEGLPRQQSFHAAGFIIAKDKLFNYVPVCLSNL 457

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP---FDDHE 607
             +    Q  M +IE  GL+K D LGL+TLT +Q     L +      L        +D +
Sbjct: 458  DNYQQVQVPMNYIESYGLLKIDLLGLRTLTEIQLIEKSLEENQKFDYLVKNDPQILNDPK 517

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  +L    T GIFQLES GM++ ++ +  +  +D+ A++SL+RPGP+D I  Y   K  
Sbjct: 518  TLTMLNLGFTEGIFQLESPGMKKTIQKVVLNSFDDLYAIISLFRPGPMDFINDYATNKKN 577

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            ++ I  IHP  D ++  T G+I+YQEQ+MQIAQ + G + ++AD+LR+A+ KK + ++ K
Sbjct: 578  QKLIKKIHPDYDKVVANTYGIIVYQEQIMQIAQSIGGMTFAQADLLRKAISKKSEVDIKK 637

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +  F   A K GI++ I   I+  + KF  YGFNKSHA +YA ++ + ++ K  Y   F
Sbjct: 638  YRSIFFENAIKKGINEKIINAIYNNIEKFGLYGFNKSHAVSYAYLTMKMSYYKARYANLF 697

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             ++ +T        I K+  + ++ N  +  P++        V ++ IY     IKG G 
Sbjct: 698  YSSLITNAAGAQATINKYVAEIKKLNFPVYSPNILHSSNKCIVTNDGIYLPFEMIKGFGA 757

Query: 848  TTARHIME-ASADKPF-DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 I+   + + PF  +L D   R+    +    +E L+ A A   FG+  M+ + S 
Sbjct: 758  EGVNKIVADLNENGPFQKNLIDTMLRLRFAGIKDAAMEILIKANAFRDFGH--MKYILSC 815

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG-FY-- 962
            DN  K    V  + +   E +   +K  + D I  ++ +  + +   + E  +LG  Y  
Sbjct: 816  DNQIKDIFKVLSSHSTYKEALKDIQKMGYYD-IVFDQENERDINYEMDYEIALLGELYNA 874

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            FS     +Y+   +   +     S+       + +AA V   ++    +G     +   +
Sbjct: 875  FS---TSIYEAKYKNK-LNTITSSIP------VSVAAEVADLRRP---RGKEFSVLELRD 921

Query: 1023 PAKEYEANFF 1032
               +    FF
Sbjct: 922  STAKI--TFF 929


>gi|220979967|emb|CAP72159.1| Putative DNA polymerase III alpha subunit [Escherichia coli LF82]
          Length = 1168

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 278/970 (28%), Positives = 446/970 (45%), Gaps = 108/970 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L V + +SL E AL   N +         A+   D+ N+ S +   Q+A    +  I G 
Sbjct: 4   LMVRTDFSLGESALKAENAVKIAREAGYTAVISADSMNIASVIPL-QRAAGDDMAVICGV 62

Query: 74  Q----LDIDMQDNLKMTNQGKT-----PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +     D   +   K+  +              S   L+   +GY+ + EL++     +Q
Sbjct: 63  KLNIVDDPTYEHRAKLAKESMRCMESLERGRNYSFTALIKNEQGYRDICELMTAANTREQ 122

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                R+ L  L     +G I+L     G + +    N        L+T      D  Y 
Sbjct: 123 FYFVPRLSLEQLVSTYAKGNIILLTSDIGSVFQ---RNDFAKIISTLIT--AGGKDNFYS 177

Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +  H   +      + +++A   ++  VA   + + S +D +  D+   V ++  + Q 
Sbjct: 178 VVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYESIDDADIKDIAHMVTNNIKIDQP 237

Query: 244 DRPRVTPDHY-----LKNRSEMVSIFS---DLP--EALENTVE--IARRCSFILQVHAPI 291
            R R+           ++  E +  FS   D+P   A+ +T +  I   C++      P 
Sbjct: 238 HRLRIPHQRDNAINGRRHLLEALKAFSVRMDVPVTAAMASTTQDSIIDACTWRWHELPPA 297

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVI 348
           LP+  + E           L   AVAGL  RL     G        + Y +RL +E++ +
Sbjct: 298 LPKMADDE--------PATLMKLAVAGLRKRLTTKEFGYTPPASENRVYVERLKYEMDTL 349

Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
            R+ F GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFERF+
Sbjct: 350 TRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFI 409

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
           NP+R+ +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R   + 
Sbjct: 410 NPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIYGVE 469

Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            + +  + K + N     + L+ + +  +                 + KL+ L R    H
Sbjct: 470 SADM-AVSKELKNVEDDSLPLEELRE--QLASLDKYATKYPDAFNAACKLQSLMRGFGRH 526

Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
           AAG+++   PL++  P+ R  R D     F+ ++ E  GLIK D LGL TL LL  +  +
Sbjct: 527 AAGMIVAGVPLTERTPVER--RGDARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRY 584

Query: 589 LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ----PDCIEDI 643
           + +  G  ++L  IP DD +         T G+FQLES  MR+ L+ +     P   + +
Sbjct: 585 IKESTGEDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTV 644

Query: 644 IALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
           +A  +L+RPGPI + +   Y +   G     SIHP ++ + +ET GV++YQEQ+MQ +++
Sbjct: 645 VATTALFRPGPIQSGMLDDYVSVAKGFMAPHSIHPRLEEVTRETNGVLLYQEQIMQSSRV 704

Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS----GAS-------------------- 737
           L+G+S++EAD LR A+GKK  ++M      F+     G                      
Sbjct: 705 LAGFSMAEADALRSAIGKKNMDKMKAIGSDFVERAQAGWVTLSLKNGGTVEVHKHAKLDC 764

Query: 738 ------------------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
                                   + G+SK  A  I++   KF  Y FNKSH+ AY++IS
Sbjct: 765 SDGKRRSYSEAISDGIDYVEIVSEQEGLSKEKAQEIWDAFEKFGGYAFNKSHSVAYSLIS 824

Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--- 830
           YQ+ W+KTHYP EF AA++T+     +K +   +DA  + I+++PP VN      ++   
Sbjct: 825 YQSMWLKTHYPAEFFAAALTI--LGEDKHQGLVKDALTYGIRVLPPDVNVSSNRIEIRTL 882

Query: 831 --GDNRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             G   +Y   +A+KG      + IM A       F+S+  F   V+ +  N RV ESL 
Sbjct: 883 EDGSQALYAPFSAVKGCSENGCQAIMRAREKVGGKFESVAQFDEAVEKRACNSRVRESLH 942

Query: 887 FAGALDCFGY 896
             GA      
Sbjct: 943 KVGAFASIEP 952


>gi|218193695|gb|EEC76122.1| hypothetical protein OsI_13390 [Oryza sativa Indica Group]
          Length = 3986

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 208/557 (37%), Positives = 309/557 (55%), Gaps = 23/557 (4%)

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A+  +    E    +  V  ++E++QKLEG+ R+   HA G++I    L+   P+Y+   
Sbjct: 2874 ALELEPMLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHAGGVLIAPGKLTDFCPLYQQPG 2933

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD---LSLIPFDDHE 607
            S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F+ +R    +      IP DD  
Sbjct: 2934 SESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMKRHKGQENFAFENIPLDDAP 2993

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY L +   T  +FQ ES GM+  L+  +P  +ED+IAL +LYRPGP+D I  + NRK+G
Sbjct: 2994 TYRLFSEGKTEAVFQFESRGMQGMLKEARPSRLEDLIALNALYRPGPMDLIPTFVNRKHG 3053

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KE +   HPL++P+L ET G+++YQEQVMQ AQ+L GYSL  AD+LRRAMGKK  EEM +
Sbjct: 3054 KEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLGGADMLRRAMGKKKAEEMAE 3113

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +E F  GA++ GI +  A  +F+L+ KFA YGFNKSHAAAY++++Y T W+K HY  EF
Sbjct: 3114 HREIFRKGAAEKGIGQDKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKVHYTAEF 3173

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVG 846
              A+MT+EMD+ +K+K   +DA +  +   PP VN     F+   ++ I Y L A+KG G
Sbjct: 3174 FCANMTVEMDDTDKLKVLYEDAMKMGLTFEPPDVNRGMYRFEPVTDKVIRYGLGAVKGTG 3233

Query: 847  TTTARHIMEASAD----------KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
                  I+ A              PF SL DFC+RVD  +LN+R LE+L+ AGA D    
Sbjct: 3234 QQAIEAIIAAREGRGVGPRGETKGPFASLFDFCARVDRTRLNKRTLEALIKAGAFDAIEM 3293

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSVENSSVRF 952
            +R  L+ S+D    +A  +  N       +F        G+ +    L +        R 
Sbjct: 3294 NRASLVASIDRAFDFANSLIANAN--QGGLFDMMGDDSHGSSTQDPALVEMLPWGVKERL 3351

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              E+  +GFY SGH  D  +  +R+      EE   +       +A +V   +    ++G
Sbjct: 3352 TQEKTAVGFYLSGHLFDEVEKEVRRFIRTPIEELADSREPQ--IMAGIVSDFRVINGQRG 3409

Query: 1013 SRIGWVTFSEPAKEYEA 1029
             R+      + +   EA
Sbjct: 3410 -RLALFKLDDKSAMIEA 3425



 Score =  126 bits (317), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 70/120 (58%), Gaps = 10/120 (8%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +  ++P FVHL++H+ +S+++G   ++ +    + D QPA+AITD +NLF A++F ++A 
Sbjct: 2750 HARRAPMFVHLRLHTEFSVVDGTARIDEVAKAASKDGQPALAITDLHNLFGAIKFYKEAR 2809

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
              G++P++G ++ I+ +          T       I+LL    +GY  L EL++R +  +
Sbjct: 2810 GKGVKPVLGAEVSIEPE----------TAGNPPGRILLLAQGRQGYLNLCELLARAWTRN 2859


>gi|304373272|ref|YP_003856481.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
 gi|304309463|gb|ADM21943.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
          Length = 979

 Score =  568 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 290/1021 (28%), Positives = 485/1021 (47%), Gaps = 106/1021 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            ++L  ++ YS L+  + ++++++     Q   + ITD +N+F   +F  +  A  I PII
Sbjct: 5    INLHTNTEYSFLQSTIKISSLIEYARQHQLKHLVITDRDNMFGVAKFYNECKANNINPII 64

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
                             G          +L+    +G+  L  L S+     +       
Sbjct: 65   -----------------GLDLEIKSFRFILIAKNYQGFLHLSLLSSKKMSFKE------- 100

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                ++E+  E +I++     G   +           K++L F   F          H  
Sbjct: 101  --IEIEELDNENIIVIDHPKLGLYSKT----------KKMLEFSNYFV---------HSN 139

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
              +   S             V       L   + +   +L  +A S    +     +  +
Sbjct: 140  DSKIANS-------------VYVQTRNVLYASEEKYLKILHKIADSAEKDEA-VDFIDFE 185

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             + +   E         + ++ T  +             ILP F         K E N  
Sbjct: 186  MWYEQVDE---------QIIQRTNSLVENILIEFPEANMILPDF---------KNEANLN 227

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
             ++ +  L  +      A+  +  ++++RL +E N+I  +KFS YFLI+ DF++WA+KNN
Sbjct: 228  PDEFLQQLLEKQVAKKKAEFKNFPNFKERLVYEFNIIKSLKFSNYFLIIWDFLRWARKNN 287

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I +GPGRGS +GS+ +Y L IT ++PL+F L+FERFLNP R+SMPD DID   +RRDE+I
Sbjct: 288  ILIGPGRGSSSGSLISYLLNITQVNPLKFDLIFERFLNPKRISMPDIDIDIQDNRRDELI 347

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRA-LQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            +Y+Q KYG+E  A IITF +  AK A  DV +    +  + V  + K IP   +     Q
Sbjct: 348  QYIQQKYGYENTALIITFSTFGAKMAFADVAKKLKNVSPTDVLAITKHIPFGLSLE---Q 404

Query: 491  AIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            A   ++ FR          +     + EI++ LEG+ R + THAAGIVI D+PL   VP 
Sbjct: 405  AYKTNANFRAYVEKQDNNGNFLYKEIFEIAKFLEGMPRQSGTHAAGIVIADKPLYNYVPT 464

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
                +     TQF+ +++E+  L+K D LGLK LT+++  ++ + Q   +  + + IP  
Sbjct: 465  LI-SKDKYNQTQFSAEFLEQFSLLKIDLLGLKNLTVVKGIINSINQHSNLNFNFNSIPIF 523

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  T  LLT   T+GIFQLES GM   L  +    I+D++A++SL+RPGPI NI +Y  R
Sbjct: 524  DKGTNELLTRGKTVGIFQLESPGMANTLRKVGISSIDDVVAVISLFRPGPIKNIPLYAQR 583

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K  +     I    + +LK T G+IIYQEQ+MQI Q ++G+  + +D++RRA+ KK  ++
Sbjct: 584  KKNEADYEIISQEYNDILKSTYGIIIYQEQIMQICQTIAGFDFATSDLIRRAISKKEAKK 643

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + K K+ FI G    G S  +   IF+ +  FA+YGFNKSHA AYA ++Y+ A++K +YP
Sbjct: 644  LYKAKQLFIQGGLNKGYSAVVLEKIFQQIEYFAEYGFNKSHAVAYATLAYKMAYLKQNYP 703

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--FKVGDNRIYYSLAAI 842
            +EF +  +T E  +   I KF ++A+   I+   P++N       ++   + IY  L  I
Sbjct: 704  LEFYSFLITNEEGSQTNIAKFIKEAQP-AIKFKKPNINISTTSVVYERKTSTIYLPLILI 762

Query: 843  KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KG+G+   + I+E    +  +    DF  R+    ++  ++  L+ +G L  FG +   L
Sbjct: 763  KGLGSVACQKILEERNKNGLYKDFLDFVIRMKIINISNTIITLLINSGTLSEFG-NIPTL 821

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L++L   + Y   + ++        ++   G F  +I       +N  +  ENE+++LG 
Sbjct: 822  LENLVTAESYKICILEDENKNLYCDYSLIPGKFELEIK-----EDNLELTIENEEKLLGM 876

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             FS      +   +         E    +    +     V        + G+ +  +T +
Sbjct: 877  SFSS-----FDQNIDLKNPVLLSELSLNVEYRMVL---YVKKVANLTAKTGASMKKITLT 928

Query: 1022 E 1022
            +
Sbjct: 929  D 929


>gi|196234154|ref|ZP_03132987.1| DNA-directed DNA polymerase [Chthoniobacter flavus Ellin428]
 gi|196221805|gb|EDY16342.1| DNA-directed DNA polymerase [Chthoniobacter flavus Ellin428]
          Length = 725

 Score =  568 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 219/741 (29%), Positives = 368/741 (49%), Gaps = 33/741 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           ++V L   S++S L GA     + ++ A    PA+A+ D + ++ A  F  K+       
Sbjct: 4   AYVELHTRSAFSFLRGASLPEQLAERAAELNLPAVALCDRDGVYGAPRFYNKSKE----- 58

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I   +   + +   ++    +        + +LV +  GYQ L  L+++  L      + 
Sbjct: 59  IEAGKEGEEKKSKPRLILGAELTLEDGAVLPVLVESRTGYQNLCRLITQAKLRGTKTDAP 118

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            +  S L E  TEGL+ LTG   GPI R    +    A +R+   ++ FGD  ++V +QR
Sbjct: 119 -VYWSELAEF-TEGLVALTGDEEGPIARCLERDDLAGARERVTRLRRAFGDKNVFVEVQR 176

Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
           H +  +  R  Q+  LA    LPL+ATN   +   E     DV     H T +    R  
Sbjct: 177 HLQRGEELRIRQLADLAGAERLPLLATNGVQYSIPEQRGVLDVFTCARHHTHLDAAGRLL 236

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + YLK+ ++M  +F+DLPEA++NTV +A R  F L       P F   E + +   
Sbjct: 237 SANGERYLKSAAQMAKLFTDLPEAIDNTVALAERLHFTLADLGYKFPTFPVPEGESM--- 293

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               LR + +AG   R            +   +++D EL +I ++ F GYFL + D +++
Sbjct: 294 -ATYLRKQVLAGARARCRN-------FNERTLRQIDHELGLIEQLGFCGYFLCIWDLVEF 345

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC-QD 425
           AKK++I +  GRGS A SV  ++L IT  DP+ ++LLFERFL   R + PD D+D    D
Sbjct: 346 AKKSDIMI-QGRGSAANSVVCFSLGITACDPIEYNLLFERFLAEGRNTWPDIDLDLPSGD 404

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DPA 484
           RR+ VI+ V  ++G    A      + + ++A+R++G+AL      + R   L  N D  
Sbjct: 405 RRESVIQEVYRRFGKHGAAMTANVITFRGRSAMREIGKALNFSLESIGRFSALFANGDFP 464

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
           H + L A    +   +      +   L ++   + GL RH   H+ G++I    LS  +P
Sbjct: 465 HTLDLLAQLTQAGIPKDHPRAEAAAYLYQM---IRGLPRHLGQHSGGMIICQNQLSSFIP 521

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
           +         V Q++    E  G+IK D LGL  +++LQ+++    QRG KV+L  +P D
Sbjct: 522 LENASMPGRVVAQWDKDDCEDLGIIKVDLLGLGMMSVLQETIQLSEQRGHKVELYEVPAD 581

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYN 662
           D ETY ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI       Y 
Sbjct: 582 DPETYEMIRAADTIGLFQIESRAQMATLPRLKPKCFYDLVVEVAIVRPGPIQGGLMHPYL 641

Query: 663 NRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
            R+  +E+ V +H  ++ +    L+ T GV ++QEQ+++++  L+ ++ SEA+ LRRA+ 
Sbjct: 642 KRRCNQEEHVYVHKDVEEILRPTLERTLGVPLFQEQMLKMSMDLADFNGSEAEELRRALS 701

Query: 719 KKIKEEMDKQKERFISGASKN 739
                + D++  R ++   + 
Sbjct: 702 FHRSHDRDERGLRQVAQTYER 722


>gi|37784574|gb|AAP47638.1| DnaE precursor [Aphanothece halophytica]
          Length = 712

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 246/633 (38%), Positives = 375/633 (59%), Gaps = 52/633 (8%)

Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +Q H    DR   +++V+++   ++ +VATN+S F+S  D EAHD L+ +  + ++++ 
Sbjct: 1   EIQDHGSPEDRIVNTEIVKISQELDIKIVATNDSHFISCNDVEAHDALICIQTNKLITED 60

Query: 244 DRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIE 297
            R R +   YLK+  EM  +F D      +  A+ NTVE+A +      +  P +P +  
Sbjct: 61  KRLRYSGTEYLKSADEMRQLFRDHLSDDVIESAIANTVEVAEKVKPYNILGEPRIPDYPV 120

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                     +  L      GL  RL  G  ++   ++ Y+ RL+ EL ++    FS YF
Sbjct: 121 PSG----YNADTYLEELTWNGLMERL--GCRSRSEISETYKTRLERELTIMQERGFSTYF 174

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           L+V D+I++A+ +NIPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD
Sbjct: 175 LVVWDYIKYARDHNIPVGPGRGSAAGSLVAYALKITNIDPVHHGLLFERFLNPERKSMPD 234

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D DFC +RRDEVI YV  +YG ++VAQIITF  + +KA L+DV R L +PYS+ DRL K
Sbjct: 235 IDTDFCIERRDEVIEYVTRRYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYSESDRLAK 294

Query: 478 LIPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
           +IP     P  L  +      +  F++   +D  V R ++++ ++EG  +    HAAG+V
Sbjct: 295 MIPVARGKPAELTKMISDDTPEPEFKKLYDSDEKVRRWVDMAIRIEGTNKTXGVHAAGVV 354

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
           I   PL ++ P+ ++      +TQ+  +  E  GL K  FLGLK LT  Q++ D L + +
Sbjct: 355 ISKEPLDEVXPLQKN-NDGAVITQYXXEDXEAXGLXKMXFLGLKNLTTFQRTADLLRKIK 413

Query: 593 GVKVDLSLIPFDD--------------------HETYHLLTTKGTLGIFQLESSGMRQAL 632
           G KV L  +P D+                     +TY+L+      G+FQLESSGM + +
Sbjct: 414 GXKVGLDXLPLDEIHSRKILAKGEIKNTKPPDIQKTYNLIEKGWLEGVFQLESSGMLKVV 473

Query: 633 EGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
           + ++P  IED+ ++++LYRPGP+D   I  + +RK+G+E+I+  HP+++P+L ET  V++
Sbjct: 474 QDLKPSSIEDLSSILALYRPGPLDAGLIPKFIDRKHGREEIIYEHPILEPILDETYAVMV 533

Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
           YQEQ+M+IAQ ++GYSL +AD+LRRAMGKK  +EM K +E FI GA+KNG+ +  A ++F
Sbjct: 534 YQEQIMKIAQDMAGYSLGQADLLRRAMGKKKVKEMQKHREIFIDGATKNGVKQETAEHLF 593

Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           + + KFA+Y            +SY T      Y
Sbjct: 594 DQMIKFAEYC-----------LSYDTEIWTVEY 615


>gi|15829190|ref|NP_326550.1| DNA polymerase III DnaE [Mycoplasma pulmonis UAB CTIP]
 gi|14090134|emb|CAC13892.1| DNA POLYMERASE III, ALPHA CHAIN [Mycoplasma pulmonis]
          Length = 981

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 277/958 (28%), Positives = 463/958 (48%), Gaps = 94/958 (9%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F++L  +S YS L+  + +N+++     +    + +TDT N   A +F        I+ +
Sbjct: 4   FINLHTNSEYSFLDSLIRINDLVQYAKENNLKTLVLTDT-NFHGADKFYFLCKKNNIKAV 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G  +++D +                  ++LL     G++ L+ L S           + 
Sbjct: 63  LGLDIEVDHK-----------------RVILLAKNTSGFRSLM-LFSESNRNG-----LE 99

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I L+ L++   + LI++     G       F+  ++A+  +  F     +          
Sbjct: 100 ISLNQLEKT-QDDLIIINHPRLG-------FSMDEIAQSSIKNFYNTSNN---------- 141

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             D+   S  V       +              D    ++L +  ++      +    + 
Sbjct: 142 --DQDPLSLYVVENKLFNVK-------------DNPILEMLNSTNNNQKNKGIEFKGFS- 185

Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +    SE++          +   +I  +C+F  +     LP+F     +++    ++ 
Sbjct: 186 --HYAPISELMQ---------KRINDIVDQCNFEYKKPEITLPKF----MNNLGISSKDF 230

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           L          +       K     + +QR+ +EL+VI+++ F  YFLI+ D I WAKKN
Sbjct: 231 LVKILKESWHEKSH-----KLQKYDNAKQRIKYELSVISKLGFEDYFLIIWDIINWAKKN 285

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            I +GPGRGS +GS+ +Y L IT+++PL F+L FERFLN DR+SMPD DID   +RRDE+
Sbjct: 286 KIAIGPGRGSASGSLVSYLLNITEVNPLEFNLFFERFLNEDRISMPDIDIDVQDNRRDEL 345

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
           + Y+  KYG + V+ I TF  L AK+++RDVGR L +  ++++ + K I    A     +
Sbjct: 346 LNYIFEKYGEQNVSTISTFQFLGAKSSIRDVGRFLGINIAKINEISKHI---DAQQSLAE 402

Query: 491 AIADDSRFREA--RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              ++   R       DP   +L++ + K+EGL R   THAAGI+I +  ++  +P +  
Sbjct: 403 QYENNQSLRSYLQNQEDPIFKKLIDFAMKIEGLPRQTGTHAAGIIISNEKINNYIPTFIV 462

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP--FDDH 606
              +   +Q++M+ IEK G +K DFLGLKTL+ +    + +AQ   ++D   I     D 
Sbjct: 463 NNKN--QSQYSMENIEKMGFLKIDFLGLKTLSTITHIEERIAQ-FEQIDFDKINSYIIDE 519

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
           +   +L  K TLGIFQ+ES GM   +  +  D  +DI A +SLYRPGP+  I VY   K 
Sbjct: 520 KIKKVLENKSTLGIFQIESPGMTNTINKINVDDFKDIYAAISLYRPGPLKFISVYAKNKK 579

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             + I  I    D ++K+T G+I+YQEQ+M+IAQ +SG+  +EADVLR+A+ KK    +D
Sbjct: 580 NPKNIKKIIEPYDNIVKDTYGIIVYQEQIMEIAQKVSGFKFTEADVLRKAISKKDITLLD 639

Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
           + K +FI G  KNG  K +  NI+  +  FA YGFNKSHA AYAV+ Y+  + K HYP+ 
Sbjct: 640 EMKAKFIQGGIKNGHPKNVVENIYLTIEDFAQYGFNKSHAVAYAVLVYKMLYYKAHYPLF 699

Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
           F ++ +     N + +K +  +A++ NI    PS+N       +  N ++  L  IKG G
Sbjct: 700 FYSSLIKTNHTNQDNLKTYFLEAKKNNIAFYSPSINNVSEQNILSKNEMFLPLIMIKGFG 759

Query: 847 TTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 + +    +  + S +DF  R    +L +  +E+L+ A AL  FG +   LL   
Sbjct: 760 PAAYNKVYKDFQENGLYKSFDDFIQRAWKMELGKANIETLIKANALREFG-NMKDLLTLF 818

Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG-FY 962
             + +    +         +       +   ++   K S  +     +NE+  LG FY
Sbjct: 819 KEVIEDKFEIVSKLAKVQGD---DIDISNFFQLEFSKNSSRDIEFERKNEEEYLGYFY 873


>gi|330723855|gb|AEC46225.1| DNA polymerase III DnaE [Mycoplasma hyorhinis MCLD]
          Length = 979

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 290/1021 (28%), Positives = 486/1021 (47%), Gaps = 106/1021 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            ++L  ++ YS L+  + ++++++     Q   + ITD +N+F   +F  +  A  I PII
Sbjct: 5    INLHTNTEYSFLQSTIKISSLIEYAKQHQLKHLVITDRDNIFGVAKFYNECKANNINPII 64

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
                             G          +L+    +G+  L  L S+     +       
Sbjct: 65   -----------------GLDLEIKSFRFILIAKNYQGFLHLSLLSSKKMSFKE------- 100

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                ++E+  E +I++     G   +           K++L F   F          H  
Sbjct: 101  --IEIEELDNENIIVIDHPKLGLYSKT----------KKMLEFSNYFV---------HSN 139

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
              +   S             V       L   + +   +L  +A S+   +     +  +
Sbjct: 140  DSKIANS-------------VYVQTRNVLYASEEKYLKILHKIADSSEKDEA-VDFIDFE 185

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             + +   E         + ++ T  +             ILP F         K E N  
Sbjct: 186  MWYEQVDE---------QIIQRTNFLVENILIEFPEANMILPDF---------KNEANLN 227

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
             ++ +  L  +      A+  +  ++++RL +E N+I  +KFS YFLI+ DF++WA+KNN
Sbjct: 228  PDEFLQQLLEKQVAKKKAEFKNFPNFKERLVYEFNIIKSLKFSNYFLIIWDFLRWARKNN 287

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I +GPGRGS +GS+ +Y L IT ++PL+F L+FERFLNP R+SMPD DID   +RRDE+I
Sbjct: 288  ILIGPGRGSSSGSLISYLLNITQVNPLKFDLIFERFLNPKRISMPDIDIDIQDNRRDELI 347

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRA-LQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            +Y+Q KYG+E  A IITF +  AK A  DV +    +  + V  + K IP   +     Q
Sbjct: 348  QYIQQKYGYENTALIITFSTFGAKMAFADVAKKLKNVSPTDVLAITKHIPFGLSLE---Q 404

Query: 491  AIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            A   ++ FR          +     + EI++ LEG+ R + THAAGIVI D+PL   VP 
Sbjct: 405  AYKTNANFRAYVEKQDNNGNFLYKEIFEIAKFLEGMPRQSGTHAAGIVIADKPLYNYVPT 464

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
                +     TQF+ +++E+  L+K D LGLK LT+++  ++ + Q   +  + + IP  
Sbjct: 465  LI-SKDKYNQTQFSAEFLEQFSLLKIDLLGLKNLTVVKGIINSINQHSNLNFNFNSIPIF 523

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  T  LLT   T+GIFQLES GM   L  +    I+D++A++SL+RPGPI NI +Y  R
Sbjct: 524  DKGTNELLTRGKTVGIFQLESPGMANTLRKVGISSIDDVVAVISLFRPGPIKNIPLYAQR 583

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K  +     I    + +LK T G+IIYQEQ+MQI Q ++G+  + +D++RRA+ KK  ++
Sbjct: 584  KKNEADYEIISQEYNDILKSTYGIIIYQEQIMQICQTIAGFDFATSDLIRRAISKKEAKK 643

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + K K+ FI G    G S  +   IF+ +  FA+YGFNKSHA AYA ++Y+ A++K +YP
Sbjct: 644  LYKAKQLFIQGGLNKGYSAVVLEKIFQQIEYFAEYGFNKSHAVAYATLAYKMAYLKQNYP 703

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--FKVGDNRIYYSLAAI 842
            +EF +  +T E  +   I KF ++A+   I+   P++N       ++   + IY  L  I
Sbjct: 704  LEFYSFLITNEEGSQTNIAKFIKEAQP-AIKFKKPNINISTTSVVYERKTSTIYLPLILI 762

Query: 843  KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KG+G+   + I+E    +  +    DF  R+    ++  ++  L+ +G L  FG +   L
Sbjct: 763  KGLGSVACQKILEERNKNGLYKDFLDFVIRMKIINISNTIITLLINSGTLSEFG-NIPTL 821

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L++L   + Y   + ++        ++   G F  +I       +N  +  ENE+++LG 
Sbjct: 822  LENLVTAESYKICILEDENKNLYCDYSLIPGKFELEIK-----EDNLELTIENEEKLLGM 876

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             FS      +   +         E    +    +     V        + G+ +  +T +
Sbjct: 877  SFSS-----FDQNIDLKNPVLLSELSLNVEYRMVL---YVKKVANLTAKTGAWMKKITLT 928

Query: 1022 E 1022
            +
Sbjct: 929  D 929


>gi|300779433|ref|ZP_07089291.1| DNA-directed DNA polymerase III alpha subunit [Chryseobacterium gleum
            ATCC 35910]
 gi|300504943|gb|EFK36083.1| DNA-directed DNA polymerase III alpha subunit [Chryseobacterium gleum
            ATCC 35910]
          Length = 1014

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 252/1023 (24%), Positives = 451/1023 (44%), Gaps = 111/1023 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  HS +SL  G LS+++++ +  A     + +TD N +    EF +K     I+PI+G 
Sbjct: 3    LNCHSFHSLRYGTLSIDDLISQALALGIKELVLTDINTVTGVYEFKKKCEENNIRPIVGV 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                            +    +    + +     G   + ++++                
Sbjct: 63   ----------------EVRNGSELYYIAIAKEFSGLAEVNKMLTSYN------------- 93

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                                 +         ++A   +L       D L    +    Y+
Sbjct: 94   ----------------CDKIDLPL-----QPELAYNFILYPLSNMPDNL-QENEYVGIYE 131

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDH 252
                  +          +V      F ++++Y  H +L A+ ++T++S+  ++       
Sbjct: 132  DELNLLIRPEYNKLLSKMVILCPITFSTKKEYNLHRILRAIDNNTLLSKLAEKEVCRKSE 191

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            Y ++   +  I+   PE +ENT ++  +CSF      P   +       D  K     L 
Sbjct: 192  YFRSVDSIHRIYRHYPEIIENTQKLLSKCSFDFVFSTPRNRKHYTGTKADDLKL----LT 247

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
              A AGLE R        G + +   +R++ EL VI  + FSGYFLI  D I+++     
Sbjct: 248  RLAYAGLERRY-------GRNHEVATKRIEKELKVIDELNFSGYFLITWDIIRYSNSMGF 300

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                GRGSGA S+ AY L ITDI P+   L FERFLN +R S PDFDID+    RD ++ 
Sbjct: 301  M-HVGRGSGANSIVAYCLGITDICPIELDLYFERFLNLNRKSPPDFDIDWSWQERDIILD 359

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            Y+ N+YG E VA   T    + ++ +R+VG+A  +P  ++D L K               
Sbjct: 360  YIFNRYGKEYVAFCGTNVEFKYRSIIREVGKAFGLPKEELDELSK--------------- 404

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                 + E    D  V ++ +  + LE      S H+ GI+I + PL+    +    +  
Sbjct: 405  -----YPERVFRDDIVKQVQKYGKLLEKFPNQRSMHSCGIIISEEPLTNFTALEMPPK-G 458

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---VKVDLSLIPFDDHETY 609
             P+ Q++M   E+ G  KFD L  + L  +  ++  L ++    V +  + I  D+ +  
Sbjct: 459  FPIVQWDMHVAEEIGFEKFDILSQRGLGTINDTVRLLEEKRGIKVNIKDTTISKDEVKCN 518

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNG 667
              L+   T+G F +ES  MR  L  ++ +  + ++A  S+ RPG   + ++  Y  R N 
Sbjct: 519  EYLSQGRTIGCFYIESPAMRGLLRRLKCNNYKVLVAASSIIRPGVAQSGMMHEYIFRHNN 578

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK--EEM 725
             +K    HP+ +  L +T G+++YQE V++IA    G S ++ D+LRRAM  K +    +
Sbjct: 579  PDKFEYFHPVFEKQLGDTYGIMVYQEDVIKIALHYGGVSAADGDILRRAMSGKGRSLSAL 638

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             K K+ F +   K G  + ++  I+  +  FA Y F K+H+A+YAV SYQ+ ++K +YP+
Sbjct: 639  QKVKDDFFASCRKQGHPEELSREIYRQIESFAGYSFCKAHSASYAVESYQSLYLKVYYPL 698

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+ +++   M    + + +  +AR     I+ P VN    +  +    IY  L  ++ V
Sbjct: 699  EFMVSAIN-NMGGFYRTEVYVHEARMSGGVILNPCVNKSEYETTIYGEEIYLGLMLLEKV 757

Query: 846  GTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
             +  A+ I  E  A+  + S+EDF  RV    +    L++L+F GA    G  + +LL  
Sbjct: 758  ESKLAQLIPKERKANGEYRSMEDFIKRVP---IGIETLQTLIFIGAFRFSGVPKNELLLK 814

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
               +    +  ++ +T     +F  E+     K    K +V   +    +E  +L F  S
Sbjct: 815  ARILLGDFKPEKRFQT-----LF--EEPIKEYKFPELKRNVFEDAF---DEIEILSFPVS 864

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
              P D+ +   +  G    ++         +++ A ++S++   T++G+ + + T+ +  
Sbjct: 865  CTPFDLLQT--KYRGTVMAKDLTE-HHKKQVKMLAYLISRKHVPTKRGT-MYFGTWIDVQ 920

Query: 1025 KEY 1027
              Y
Sbjct: 921  GNY 923


>gi|308190227|ref|YP_003923158.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER]
 gi|307624969|gb|ADN69274.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER]
          Length = 967

 Score =  566 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 277/1030 (26%), Positives = 460/1030 (44%), Gaps = 112/1030 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V+L   S Y+ L+  + +++++        PA+ ++D NN+F    F +      I+ I
Sbjct: 4    YVNLYNTSEYTFLDSLIRIDDLVRLSKEHNLPAVVLSDRNNMFGLGVFMEACLKYDIKGI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            I                 G          ++L    +GYQ++ +L+          Q   
Sbjct: 64   I-----------------GVDLDVDNYRFIVLAKNYQGYQKINQLI---------YQKSI 97

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                 + E+    LI+L     G                    +     D  Y   + + 
Sbjct: 98   NKDIEISELWNPNLIVLDHPKYG--------------------YYAQTKDNKYSASKNY- 136

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                Y  S    L  +     +    +      D E  + L       +   K       
Sbjct: 137  ----YINSSDASLPNS-----ILVKENKLFEANDNETLNYLQ--KLGNLEETKHYANYFD 185

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            +  + +            + ++    I   C+ I    A  L  F   +    +K   + 
Sbjct: 186  EVNVDS------------KIIDRIYSIINECNVIFPKKALHLAPFQNNDEATNEKLFVSL 233

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L+  A      RL     ++  +  ++ +RL++E NVI ++ +  YFLI+ D + WAK  
Sbjct: 234  LKAGA-----KRL----TSELKNYPEWNKRLEYEFNVIKKLGYINYFLIIQDLVNWAKSQ 284

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I +GPGRGS AGS+ +Y L IT+I+PLR++LLFERFLNPDR+S PD DID   DRR EV
Sbjct: 285  KIAIGPGRGSAAGSLVSYLLNITEINPLRYNLLFERFLNPDRVSWPDIDIDIQDDRRFEV 344

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
              Y+Q KYG ++   I TF ++ AK A+RD+GR + +    ++R+ K I +D        
Sbjct: 345  FEYLQKKYGVDKTGLISTFQTIGAKMAIRDMGRVIGISLIDINRISKTIKSDNLTD---- 400

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +D  F+      P    L + + K+EGL R  S HAAG +I    L   VP+     
Sbjct: 401  AYKNDIDFKIEMDNYPE---LYKHALKIEGLPRQQSFHAAGFIIAKDKLFNYVPVCLSNL 457

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL---SLIPFDDHE 607
             +    Q  M +IE  GL+K D LGL+TLT +Q     L +      L        +D +
Sbjct: 458  DNYQQVQVPMNYIESYGLLKIDLLGLRTLTEIQLIEKSLEENQKFDYLVKSDPQILNDPK 517

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  +L    T GIFQLES GM++ ++ +  +  +D+ A++SL+RPGP+D I  Y   K  
Sbjct: 518  TLTMLNLGFTEGIFQLESPGMKKTIQKVVLNSFDDLYAIISLFRPGPMDFINDYATNKKN 577

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            ++ I  IHP  D ++  T G+I+YQEQ+MQIAQ + G + ++AD+LR+A+ KK + ++ K
Sbjct: 578  QKLIKKIHPDYDKVVANTYGIIVYQEQIMQIAQSIGGMTFAQADLLRKAISKKSEVDIKK 637

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +  F   A K GI++ I   I+  + KF  YGFNKSHA +YA ++ + ++ K  Y   F
Sbjct: 638  YRSIFFENAIKKGINEKIINAIYNNIEKFGLYGFNKSHAVSYAYLTMKMSYYKARYANLF 697

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             ++ +T        I K+  + ++ N  +  P++        V ++ IY     IKG G 
Sbjct: 698  YSSLITNAAGAQATINKYVAEIKKLNFPVYSPNILHSSNKCIVTNDGIYLPFEMIKGFGA 757

Query: 848  TTARHIME-ASADKPF-DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 I+   + + PF  +L D   R+    +    +E L+ A A   FG+  M+ + S 
Sbjct: 758  EGVNKIVADLNENGPFQKNLIDTMLRLRFAGIKDAAMEILIKANAFRDFGH--MKYILSC 815

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG-FY-- 962
            DN  K    V  + +   E +   +K  + D I  ++ +  + +   + E  +LG  Y  
Sbjct: 816  DNQIKDIFKVLSSHSTYKEALKDIKKMGYYD-IVFDQENERDINYEMDYEIALLGELYNA 874

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            FS     +Y+   +   +     S+       + +AA V   ++    +G     +   +
Sbjct: 875  FS---TSIYEAKYKNK-LNTITSSIP------VSVAAEVADLRRP---RGKEFSVLELRD 921

Query: 1023 PAKEYEANFF 1032
               +    FF
Sbjct: 922  STAKI--TFF 929


>gi|120437403|ref|YP_863089.1| DNA polymerase III subunit alpha-2 [Gramella forsetii KT0803]
 gi|117579553|emb|CAL68022.1| DNA polymerase III subunit alpha-2 [Gramella forsetii KT0803]
          Length = 994

 Score =  565 bits (1457), Expect = e-158,   Method: Composition-based stats.
 Identities = 246/1038 (23%), Positives = 437/1038 (42%), Gaps = 118/1038 (11%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L  H+ YSL  G +    + +    +    +A+TD NN  + LEF +      ++ ++G
Sbjct: 2    YLNCHTYYSLRYGTMPTVELCELAKKNGVKQLAVTDINNTSACLEFLKITRRTNLKALVG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE-LVSRMYLLDQGKQSVRI 131
                                       V +     GY++L E L + ++   +       
Sbjct: 62   IDFRN----------------GADQQYVGIAKNNTGYRQLNEHLSNYIHTHKEFPAQAPP 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                         I+ +                   EK +   KK F +  ++ +     
Sbjct: 106  LPDCF--------IIYS------------------LEKVISQKKKDFRENEFIGI----S 135

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTP 250
             +  R+ +  +     +  LV      F +++DY AH +L A+ ++T++S+     +   
Sbjct: 136  TESLRKLKFSEY-QKLKDKLVLLQTVSFRNKKDYNAHRLLRAIDNNTLLSKLPKSEQGFF 194

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             H +   +++   F D P  LENT  +   C    +           K     ++E+E +
Sbjct: 195  HHQMIPPADIEKEFEDFPHILENTQNLMNLCQVNFEFGRDQNRNL--KIAGRSEQEDEKK 252

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L       L  R  +         +    R++ EL VI R+ F  YFLI  D + +A+  
Sbjct: 253  LVELCYKKLPERYPE-------KEEKVYARVEKELGVIIRLGFVSYFLINLDIVSYARSQ 305

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            N P   GRGSGA S+ AY L IT++DP+   L FERF+NP+R S PDFDIDF    R++V
Sbjct: 306  NYPF-IGRGSGANSIVAYILGITNVDPIELDLYFERFINPNRSSPPDFDIDFSWKDRNDV 364

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
             RY+  +Y  E  A + T+ + + +A  R++G+   +P   +D+L +             
Sbjct: 365  TRYIFEQY--EHTALMGTYVTFKRRAVARELGKVFGLPKENIDKLSQG------------ 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F   +  D     +L  S+ ++G   + S H+ GI+I +  +      +   +
Sbjct: 411  -------FFNYKELDHLEKLVLRYSRLIDGFPNYLSVHSGGIMILNDSVYNYAGTFLPPK 463

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF-----DD 605
                  Q +M   E  G+ KFD L  + L+ +  +++ + Q      +  I       +D
Sbjct: 464  GFR-TIQIDMNIAEDVGIHKFDILAQRGLSKITDAIEIINQNQPTAKIKDIEDIKVFKED 522

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
                 LL T   +G+F +ES  MR  L  +Q D   +++A  S+ RPG     +   +  
Sbjct: 523  SAINDLLKTGDCMGVFYVESPAMRGLLTKLQTDNYMNLVAASSVIRPGISSAGMKEEFIR 582

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-- 721
            R    E+    HP++  ++K+T GV++YQE VM++A   +G  L +ADVLRR M  K   
Sbjct: 583  RHRDPERRKEAHPVMLKIMKDTYGVMVYQEDVMKVAFEFAGLDLDDADVLRRGMSGKKTS 642

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K +M+K +E F     + G S  +   ++E ++ FA Y F K H+A+YAV SYQ+ ++K 
Sbjct: 643  KGQMEKIEETFRENCKERGYSVQLTNEVWEQISSFAGYAFPKGHSASYAVESYQSLYLKK 702

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            ++P+EF+ A++         ++ + Q+ R+   +I  P +N       + +  +Y  L  
Sbjct: 703  YFPLEFMVAAIN-NGGGFYDLQTYIQEIRKCGGEIHAPCINESDHPNTIHNKDVYLGLGY 761

Query: 842  IKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +K +   T   I+E      PF SL+DF  RV+       +L   +   A     + +  
Sbjct: 762  VKELEDKTIIQILENRQFFGPFKSLDDFIDRVNISIEQISLL---LKVNAFRFTKFDKHH 818

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL      + Y +       +    +F  +   F     L +F        ++    +LG
Sbjct: 819  LLW-----KAYFKLQHNKPKSNQPLLFKSKHRDFE----LPEFEYSKLIEAYDQ-MELLG 868

Query: 961  FYFSGHPL----DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            F     PL    D+ +  L+       +     I G  + +   +V+ ++  T  G  + 
Sbjct: 869  F-----PLCSQFDLLQEPLK--NSVEAKNLKNYI-GKEVEIYGNLVNSKKTGTSNGKYMY 920

Query: 1017 WVTFSEPAKEY-EANFFP 1033
            + TF +      +   FP
Sbjct: 921  FGTFYDIEGNIFDIVLFP 938


>gi|300776582|ref|ZP_07086440.1| DNA polymerase III, alpha subunit [Chryseobacterium gleum ATCC 35910]
 gi|300502092|gb|EFK33232.1| DNA polymerase III, alpha subunit [Chryseobacterium gleum ATCC 35910]
          Length = 1024

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 241/1036 (23%), Positives = 449/1036 (43%), Gaps = 115/1036 (11%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H+ +SL  G +S+  ++D     +   +A+TD N +    +F +     GI+PI+G 
Sbjct: 3    LNCHTYHSLRYGTISVEELVDLAMDYKLKVLALTDINTVTGIYQFYKLCEDKGIKPIVGV 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + ++ +                   + L    +G   +  L++                
Sbjct: 63   DVRVENE----------------QYYICLAKNPKGIAEVNRLLTDYN------------- 93

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                              +  I ++         E   + +       + +  +      
Sbjct: 94   ----------------CENIEIPKSN-----PQLENCFVIYTLQNKPDILLEHEFIGIRQ 132

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDH 252
                  +     +    +V  +   F ++++YE H +L A+  + + ++  ++     D 
Sbjct: 133  DELNLLINSEFKSLTHKMVILHPVTFKTDDEYELHKILRAIDGNILFTKLAEKDYCRKDE 192

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
               ++  ++  F   PE +ENT  I  +CSF  +   P   ++      D ++ +   L 
Sbjct: 193  LFMSKKTLLDQFKHYPEIVENTKFIVSQCSFDFEFKTPKNKKYYT----DSKENDFKLLS 248

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
              A  GL  R          + +   +R + EL VI ++ F GYFLI  D IQ++K+   
Sbjct: 249  QLAYEGLSHRYPD-------NNRQAIERAEKELTVIHQLNFCGYFLITWDIIQYSKRMGF 301

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                GRGSGA S+ AY L I+DI PL   L FERFLN +R S PDFDID+    RD ++ 
Sbjct: 302  M-HVGRGSGANSIIAYCLGISDICPLELDLYFERFLNLNRKSPPDFDIDWSWKNRDTILE 360

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            Y+ +KYG   VA   T    + K+  R++G+   +P  ++D+L K               
Sbjct: 361  YIFDKYGKNHVAFCGTNVEFKRKSRFRELGKVFGLPKDELDQLSK--------------- 405

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                + RE    +  V  + +  Q L G     S H+ GI+I + P++    +    + +
Sbjct: 406  ----KPRELHDQNSIVQEIYKYEQLLVGFPNQRSMHSCGILISEEPITNYSVLEFPPK-E 460

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPF--DDHETY 609
             P+ QF+M   E  GL KFD L  + L  ++ +++ +  ++G+ VD+       D+ +  
Sbjct: 461  FPIVQFDMHTAEDIGLEKFDILSQRGLGTIKDTVNLIKEKKGINVDIEDTRISKDEVKCN 520

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNG 667
              L+   T+G F +ES  MR  L  ++ D  + ++A  S+ RPG   + ++  Y  R N 
Sbjct: 521  EFLSIGKTIGCFYIESPAMRGLLRRLKCDNYKVLVAASSIIRPGVAQSGMMREYIFRHNH 580

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK--EEM 725
              +    H + +  L ET G+++YQE V++IA    G S +  DVLRRAM  K +    +
Sbjct: 581  PGQFEYFHDVFEKELGETYGIMVYQEDVIKIAMHFGGVSAANGDVLRRAMSGKGRSLSAL 640

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             K K+ F     + G  + ++  ++  +  FA Y F K+H+A+YAV SYQ+ ++K +YP+
Sbjct: 641  QKLKDDFFESCKRKGHPEQLSQEVYRQIESFAGYSFCKAHSASYAVESYQSLFLKAYYPI 700

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+ +++        + + +  +A+    +I  P +N       +    +Y  L  I+ +
Sbjct: 701  EFMVSAIN-NGGGFYRTEVYVHEAKMSGAKIHNPCINLSEFHTTLYGTDVYLGLMHIEKL 759

Query: 846  GTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
              +   +I E    +  + SLEDF  RV+   +    L+ L+F GA    G  + +LL  
Sbjct: 760  EASIKVNIPEERKENGDYGSLEDFIKRVN---IGIETLQILIFVGAFRFTGKQKHELL-- 814

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
               I+      +    +K  ++F   +  +    T+++   E++      E  +LGF  S
Sbjct: 815  ---IEARFLLSKNQYKSKIISLFEEPQKDYK-LPTIDRNPFEDAFD----EIEILGFPVS 866

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR------KGSRIGWV 1018
                D+ K   +  G    ++ +       +++ A ++S++    +      K   + + 
Sbjct: 867  YSIFDLLKT--KYRGHVLVKDLL-KYHKKQVKMLAYLISRKHVPIKMRNHPGKKDDMYFG 923

Query: 1019 TFSEPAKE-YEANFFP 1033
            T+ +   E ++   FP
Sbjct: 924  TWIDAEGEYFDTAHFP 939


>gi|229105233|ref|ZP_04235882.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-28]
 gi|228678159|gb|EEL32387.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-28]
          Length = 562

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 213/584 (36%), Positives = 330/584 (56%), Gaps = 32/584 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3   FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG    I  ++  +              +VLL     GYQ L+++ S +      K    
Sbjct: 63  IGLTASIFSEEEER-----------SYPLVLLAENEIGYQNLLKISSSIMT----KSKEG 107

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I   WL     +GLI ++ G  G I++    ++   AE+   T++ +F    Y++LQ H 
Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMF-GHFYMSLQHHA 165

Query: 191 GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             D     + + +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 250 PDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            D Y LK+  EM ++FS   EA+ NTV+IA RC   +  H   LP+F     +      +
Sbjct: 226 TDQYYLKSSDEMEALFSHTEEAIYNTVKIAERCKVEIPFHVNQLPKFPVPSNE----TND 281

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             LR     GL  R        G   + + +RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282 IYLRRVCEEGLHKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
           +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
           E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455 -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
             +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ ++
Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKK 556


>gi|283769527|ref|ZP_06342423.1| DNA polymerase III, alpha subunit [Bulleidia extructa W1219]
 gi|283103795|gb|EFC05181.1| DNA polymerase III, alpha subunit [Bulleidia extructa W1219]
          Length = 1015

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 257/1031 (24%), Positives = 460/1031 (44%), Gaps = 76/1031 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL V S YS  +  + L + +         ++ ++D N L     FS+     GIQ I
Sbjct: 14   FSHLLVTSEYSFYQSTIRLEDYVRYAKKLGYQSLVLSDHNVLSGHDRFSKLCAKEGIQAI 73

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G ++D+ ++++            TVP ++L     +GYQ LI    ++           
Sbjct: 74   FGMEMDVQIENS------------TVPFLIL-AKDNQGYQELIRYSYQISQTGS------ 114

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    L+   +  + ++  G  G  D A      ++ E +L  F++    R +     + 
Sbjct: 115  VSYDQLKN-HSGHIHIIVYGEGGLFDEALLKGQREILEIQLTQFQEDL--RFFDVAISYN 171

Query: 191  GYDRYRESQVV--QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++RE  V+  Q+  +  +P VA +   +L+  + +   VL  +     +     P +
Sbjct: 172  ENQKFRECNVLLKQVCRSKNIPTVAISKVKYLTSSEAKDFHVLELLGKKKTIHDPGVPVL 231

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP-RFIEKECDDIQKEE 307
                Y  +  E+   + D  E  E    +A  C   L +    LP  F  K+     K+E
Sbjct: 232  VG-RYFYSDEEIHQYYDD--EEQERASSLAGECHVNLTLFQTQLPKPFFLKD-----KDE 283

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L+     GL+ RL    I K      Y  R+  E N++   +F  YFLIV + I++A
Sbjct: 284  KTYLKQLVFLGLQKRLQTKEIPKA-----YLTRIQMEFNIVCEKRFERYFLIVYEAIRYA 338

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +K N+ +GPGRGS  GS+ AYA+ I+ IDPL++ LLFERFLNP+R  MPD DID     R
Sbjct: 339  RKQNLLIGPGRGSAVGSLMAYAMGISQIDPLKYGLLFERFLNPNRTKMPDIDIDIASQDR 398

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA--H 485
              ++ Y+Q  YG+E VA I TF SL +   ++ + +   +   +   L   +    A   
Sbjct: 399  PLLLNYLQKIYGYEHVALISTFHSLASVEVIQALCQCYTLKEREARSLSLAVKKARAKYK 458

Query: 486  PVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +L+ + + D   + A     +   +  ++QKLEGLY   S H AGIV+ ++ L  +VP
Sbjct: 459  VDNLRVLQERDIALQNAVKQSKACQEVFAMAQKLEGLYTSDSIHPAGIVLSEKSLLDVVP 518

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +     +     Q++   +E  GLIK DFL L  L  L+   + L Q  +K+D   +  +
Sbjct: 519  VM--ESNGFLKIQWDKDTLETHGLIKMDFLSLSNLDFLK---ELLHQTNLKIDTPHLDLE 573

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D ++Y LL    T G+FQL++  +RQ L  ++P+   +++ ++ + RP  + +I  Y   
Sbjct: 574  DQDSYALLNRGLTAGLFQLDAPFLRQQLPRLKPNSFMELVNVLGIARPQAVQHIPQYVEN 633

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K            I  ++K T GV I+QEQVM++   ++G + ++A+ +R+  G K  E 
Sbjct: 634  KRS----EYP-KSIQELVKNTHGVFIFQEQVMRLLVEVTGMNFAQAETIRKN-GCKEPEL 687

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFAD-YGFNKSHAAAYAVISYQTAWMKTHY 783
            +   +E+F +             N++ ++ +F   +GFN SH  AY +++YQ  ++K H 
Sbjct: 688  IKGLEEKFTAIH----------PNLWRVIQEFISGFGFNLSHGVAYGLLAYQMLYIKAHD 737

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P+ F +  +   + +   +    ++ R   I      +       ++    I   L AI 
Sbjct: 738  PLTFYSVLLNQSLKSNSLMATILKEMRLQKIPFYSFDLRCQEAYCRMDKEGIQLGLMAIP 797

Query: 844  GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             +   T   I +    + P+++     +R+    ++   +   +  GALD FGYSR  L+
Sbjct: 798  SLRYETIEAIQKDFKENGPYENYFQCVARLSLLGIHSEQVLECIKVGALDFFGYSRSALI 857

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              L++  +YA     ++  K    F                  E+ +++ + EQ VL + 
Sbjct: 858  HQLEDAFRYASLCVVHQQGKKYLNFELVSSPVLQD------EKESLNMKRQYEQSVLSYS 911

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA-AMVVSKQQKKTRKGSRIGWVTFS 1021
                 LD     L +         + T      ++  A V   ++ + + G  + +V   
Sbjct: 912  LQ---LDP--SALVRQKNHWCLPFLKTWSYQPDQIGLATVTQIKEHQDKNGHYMAFVRIE 966

Query: 1022 EPAKEYEANFF 1032
            + + + E   F
Sbjct: 967  DESGQLEVLIF 977


>gi|240047654|ref|YP_002961042.1| DNA polymerase III DnaE [Mycoplasma conjunctivae HRC/581]
 gi|239985226|emb|CAT05239.1| DNA polymerase III alpha subunit [Mycoplasma conjunctivae]
          Length = 978

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 299/1034 (28%), Positives = 483/1034 (46%), Gaps = 113/1034 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            ++L  +S YS L   + ++++++    +    + +TD NNLF+  +F        I PII
Sbjct: 4    INLHTNSEYSFLSSTIKIDSLINYAIQNNLSTLVLTDINNLFAVPKFYHLCKKNNINPII 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
                             G          +LL     GYQ L  L S+          +  
Sbjct: 64   -----------------GLQLEAENYHFILLAKNYLGYQHLSALSSK---------KMHN 97

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                + E+  E +I++     G   +                 ++L  D  YV       
Sbjct: 98   QEISILELSNENVIIIDHPELGFYTKNK---------------QQLKLDNYYVVSNDVNL 142

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             +                  V   N   L  ++ +    L  +         D+      
Sbjct: 143  ENA-----------------VFVQNRSVLYAKEEKYLKYLYKIKG---ADWVDKKFYDFQ 182

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ---VHAPILPRFIEKECDDIQKEEE 308
             +  +  E           ++ T E+             + P +P F     +D  K   
Sbjct: 183  EWSIDVDE---------SIIKRTNELVSNIQIEFPKPFFNLPDVPSFTSSNANDNLKSIL 233

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             +   K    L+            +    R+RL  E  VI+ + FS YFL++ DFI+WA+
Sbjct: 234  EDSVIKKQDELK------------NYPQVRKRLSSEYKVISELNFSNYFLLIWDFIKWAR 281

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              NI +GPGRGS +GS+ +Y L IT I+PLR+ LLFERFLNP R +MPD DID    RR 
Sbjct: 282  SQNILIGPGRGSSSGSLISYLLDITQINPLRYDLLFERFLNPLRQTMPDIDIDIQDTRRS 341

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI Y+Q  YG+E  A IITF +L A++  RDV +A  +  S+V+   KLI   P   + 
Sbjct: 342  EVIDYIQKTYGYEHTATIITFSTLAARSVFRDVSKAFGISESEVNANAKLI--KPNMTLQ 399

Query: 489  LQAIADDSRFREARLADPS-----VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                 + S FR                + +IS+ LEG+ R + THAAGIV+   P+ QLV
Sbjct: 400  ECYDEEKSAFRSLIDRQEQDKTYKYKEIFKISKFLEGMPRQSGTHAAGIVVSKVPICQLV 459

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P   + +      QF+ +++E+  L+K D LGLK L ++Q+ L  +A+   ++    +P 
Sbjct: 460  PT-LESKDGYNQVQFSAEYLEEFSLLKIDLLGLKNLNIVQQILTLIAKENHELSFEDLPL 518

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D  T +LL++  T GIFQLES GM   L G+  D IED+IA +SL+RPGP+  I +Y  
Sbjct: 519  FDAATNNLLSSGLTSGIFQLESPGMSSTLRGVGVDSIEDVIATISLFRPGPLKQIPIYKQ 578

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RKN K K  SI    D ++  T G+IIYQEQ+MQI Q ++G++L++AD++R A+ KK + 
Sbjct: 579  RKNNKIKWESISYEYDQIVAPTYGIIIYQEQIMQICQQIAGFNLAQADIIRVAISKKDES 638

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            ++   K+ FI  A K G        I+EL+ KFADYGFNK+HAAAYA ++Y+ A++KT +
Sbjct: 639  KLIAIKDSFIEAAIKKGHKLEYIEKIYELIYKFADYGFNKAHAAAYATLAYKMAYLKTKF 698

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP--CVDFKVGDNRIYYSLAA 841
            P +F +  ++ E  + E IKK+  +A++   ++  P +N       F + +  I+  L  
Sbjct: 699  PAQFYSCLISNENGSHENIKKYALEAQKSGFKVCQPDINHSFENATFDLEEKLIFLPLTM 758

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IKG+G+   R ++ E  A   + +  DF  R+     +  ++  L+ A AL  FG S+  
Sbjct: 759  IKGIGSNYIRPLLKEREAKGKYSNFIDFFLRMKIINFSETLIIKLIKASALASFG-SQDS 817

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL S++  + Y   + ++   +    +      F+    L++  + +     +NE   LG
Sbjct: 818  LLASVEIAKNYYPCILEDAKGEK---YIDYSQVFNIPFVLKEVEI-DYQQTIKNEIEFLG 873

Query: 961  FYFSGHPL-DVYKPILRKMGIKGYEE-SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
              FS  P+    K  ++ + ++  ++ S+  +  N   L          K++ GS    +
Sbjct: 874  MQFSKPPIPKALKNQIKLVDLEANQQYSLNLVVNNFALL----------KSKAGSSYAKI 923

Query: 1019 TFSEPAKEYEANFF 1032
            + S+   + +   F
Sbjct: 924  SLSDFDTQVDVLLF 937


>gi|293411935|ref|ZP_06654660.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469490|gb|EFF11979.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 1172

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 271/973 (27%), Positives = 437/973 (44%), Gaps = 110/973 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-----GIQ 68
           L V + +SL E AL   N +         A+   D+ N+ S +   + A        G++
Sbjct: 4   LMVRTDFSLGESALKAENAVKIAREAGYTAVISADSMNIASVIPLQRAAGDDMAVICGVK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQG---KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
             I      + +  L   + G           S   L+   +GY+ + EL++     +Q 
Sbjct: 64  LNIVDDPTYEHRAKLAKESMGCMESLERGRNYSFTALIKNEQGYRDICELMTAANTREQF 123

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
               R+ L  L     +G I+L     G + +      +  A+           +  Y  
Sbjct: 124 YFVPRLSLEQLVSTYAKGNIILLTADIGSVYQ-----RNDFAKIISSLITAGGKNNFYSV 178

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +  H   +      + +++A   ++  VA   + + S +D +  D+   V ++  + Q  
Sbjct: 179 VYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYESIDDADIKDIAHMVTNNIKIDQPH 238

Query: 245 RPRVTPDHY-----LKNRSEMVSIFS---DLP--EALENTVE--IARRCSFILQVHAPIL 292
           R R+           ++  E +  FS   D+P   A+ +T +  I   C++      P L
Sbjct: 239 RLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIDACTWRWHELPPAL 298

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIA 349
           P+  + E           L   AVAGL  RL     G        + Y +RL +E++ + 
Sbjct: 299 PKMADDE--------PATLMKLAVAGLRKRLTTKEFGYTPPASENRVYVERLKYEMDTLT 350

Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
           R+ F GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFERF+N
Sbjct: 351 RLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFIN 410

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
           P+R+ +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R   +  
Sbjct: 411 PERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIYGVES 470

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
           + +  + K + N     + L+ + +  +                 + KL+ L R    HA
Sbjct: 471 ADM-AVSKELKNVEDDSLPLEELRE--QLASLDKYATKYPDAFNAACKLQSLMRGYGRHA 527

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
           AG+++   PL++  P+ R  R D     F+ ++ E  GLIK D LGL TL LL  +  ++
Sbjct: 528 AGMIVAGVPLTERTPVER--RGDARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRYI 585

Query: 590 AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ----PDCIEDII 644
            +     ++L  I  +D +         T G+FQLES  MR+ L+ +     P   + ++
Sbjct: 586 KENTGEDINLDAISLEDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTVV 645

Query: 645 ALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
           A  +L+RPGPI + +   Y +   G     S+HP++D +  ET GVI+YQEQ M   +LL
Sbjct: 646 ATTALFRPGPIQSGMLDDYVSVAKGFMTPESLHPVLDELTAETNGVILYQEQTMNATRLL 705

Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS-------------------- 742
           +G++++EAD +R+A+GKK  E+M    E+FI  A    I                     
Sbjct: 706 AGFTMAEADGVRKAIGKKDMEKMKSMGEKFIVQAQAGWIDVELEDGTTQRIHRAEHFKCE 765

Query: 743 --------------------------------KTIAVNIFELLAKFADYGFNKSHAAAYA 770
                                           +  A  I+    K   Y FNKSH+ AY+
Sbjct: 766 DGTLKTVEEALEFGAKLPINAVRVTASHPGLSEMKAKEIWTAFEKNGAYQFNKSHSVAYS 825

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
           +ISYQ+ W+KTHYP EF AA++T+     +K +   +DA  + I+++PP VN      ++
Sbjct: 826 LISYQSMWLKTHYPAEFFAAALTI--LGEDKHQGLVKDALTYGIRVLPPDVNVSSNRIEI 883

Query: 831 -----GDNRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRVDSKKLNRRVLE 883
                G   +Y   +A+KG      + IM A       F+SL  F   V+ +  N RV E
Sbjct: 884 RTLEDGSQVLYAPFSAVKGCSENGCQAIMRAREKVGGKFESLAQFEEAVEKRACNSRVRE 943

Query: 884 SLVFAGALDCFGY 896
           SL   GA      
Sbjct: 944 SLQKVGAFASIEP 956


>gi|18466680|ref|NP_569487.1| putative DNA polymerase III alpha subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|16505996|emb|CAD09882.1| putative DNA polymerase III alpha subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
          Length = 1172

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 272/973 (27%), Positives = 440/973 (45%), Gaps = 110/973 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-----GIQ 68
           L V + +SL E AL   N +         A+   D+ N+ S +   + A        G++
Sbjct: 4   LMVRTDFSLGESALKAENAVKIARDAGYTAVISADSMNIASVIPLQRAAGDDMAVICGVK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
             +      + + +L   + G               L+   +GY+ + EL++     +Q 
Sbjct: 64  LNVVDDPTYEHRAHLAKESGGCMESLVRDRSYCFTALIKNEQGYRDVCELMTLANKREQF 123

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
               R+ L  L     +G I+L     G + +         A+           D  Y  
Sbjct: 124 YFVPRLALDQLAAAYAKGNIILLTSDIGSVFQ-----RRDFAKIIGTLVTAGGRDNFYSV 178

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +  H   +      + +++A   ++  VA   + + + +D +  D+   V ++  + Q  
Sbjct: 179 VYPHPTPFYDQINVRAMKVASELKIEPVAFYPAYYEAVDDADIKDIAHMVTNNIKIDQPH 238

Query: 245 RPRVTPDHY-----LKNRSEMVSIFS---DLP--EALENTVE--IARRCSFILQVHAPIL 292
           R R+           ++  E +  FS   D+P   A+ +T +  I   C++      P L
Sbjct: 239 RLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEACTWRWHELPPAL 298

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIA 349
           P+  + E           L   AVAGL  RL     G        + Y  RL +E++ + 
Sbjct: 299 PKMADDE--------PATLMKLAVAGLRKRLTTKEFGYTPPASEHRVYVDRLKYEMDTLT 350

Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
           R+ F GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFERF+N
Sbjct: 351 RLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFIN 410

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
           P+R+ +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R   +  
Sbjct: 411 PERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIYGVDA 470

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
           + +  + K   N     +SL+ + +  +               + + KL+ L R    HA
Sbjct: 471 ADM-AVSKEFKNLEDDSLSLEELRE--QLASLDKYATKNPEAFKAACKLQSLMRGFGRHA 527

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
           AG+++   PL +  P+   +R +     F+ ++ E  GLIK D LGL TL LL  +  ++
Sbjct: 528 AGMIVAGVPLVERTPVE--LRGNARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRYI 585

Query: 590 AQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ----PDCIEDII 644
            +  G  ++L  IP DD +         T G+FQLES  MR+ L+ +     P   + ++
Sbjct: 586 KESTGDDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTVV 645

Query: 645 ALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
           A  +L+RPGPI + +   Y +   G     S+HP++D +  ET GVI+YQEQ M   +LL
Sbjct: 646 ATTALFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDELTAETNGVILYQEQTMNATRLL 705

Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS-------------------- 742
           +G++++EAD +R+A+GKK  E+M    E+F+  A    I                     
Sbjct: 706 AGFTMAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWIDVEMEDGTTQRIHRAEHFKCG 765

Query: 743 --------------------------------KTIAVNIFELLAKFADYGFNKSHAAAYA 770
                                           +T A  I++   K   Y FNKSH+ AY+
Sbjct: 766 DGALRTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEIWDAFEKNGAYQFNKSHSVAYS 825

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
           +ISYQ+ W+KTHYP EF AA++T+     +K +   +DA  + I+++PP VN      ++
Sbjct: 826 LISYQSMWLKTHYPAEFFAAALTI--LGEDKHQGLVKDALTYGIRVLPPDVNVSSNRIEI 883

Query: 831 -----GDNRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRVDSKKLNRRVLE 883
                G   +Y   +A+KG      + IM A       F+SLE F   V+ +  N RV E
Sbjct: 884 RTLEDGSQVLYAPFSAVKGCSENGCQAIMRAREKVGGKFESLEQFEEAVEKRACNSRVRE 943

Query: 884 SLVFAGALDCFGY 896
           SL   GA      
Sbjct: 944 SLQKVGAFASIEP 956


>gi|294155789|ref|YP_003560173.1| DNA polymerase III, alpha subunit [Mycoplasma crocodyli MP145]
 gi|291600163|gb|ADE19659.1| DNA polymerase III, alpha subunit [Mycoplasma crocodyli MP145]
          Length = 974

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 269/962 (27%), Positives = 457/962 (47%), Gaps = 103/962 (10%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           +L  ++ +S L   + L  +    +  +   +A+TD NN+F+   F   +    I+PII 
Sbjct: 5   YLHTNTEFSFLNSTIKLEKLFKLASEKEYEYLAMTDINNMFALGMFLNLSKKYNIKPII- 63

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                           G        S++++    EGY   IEL +  +L+ +G++     
Sbjct: 64  ----------------GFELLQDNISVIIIAKNYEGY---IELNNIAFLVSKGQKV---- 100

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              L+ + +  + ++    +G     +  N                      NL+  +  
Sbjct: 101 --ELESLDSNNVYVIDHEENG-----YLKN----------------------NLEVPKIS 131

Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
           + +  S+ +    T   P+        L E+D EA   L    ++ + +           
Sbjct: 132 NFWYNSKTIISDQTIYAPVKKV-----LFEDDNEALIALQTTGNNKITNSYYNDYFN--- 183

Query: 253 YLKNRSEMVSIFSDLP-EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
                      F  +  + L N   +    + I     P L  F            E  L
Sbjct: 184 --------EKDFIGIDNKVLLNVNTLVNSINIIFPDSTPKLAEFKND------LTPEKLL 229

Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
             + + GL++        + Y  +   +RL +E   I ++ F  YFLI+ D I +AK   
Sbjct: 230 YKQCLIGLDI---NKKEFEKYSIETVMERLTYEYKTIVKLGFCSYFLIIKDVIDFAKNKG 286

Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
           I +GPGRGS AGS+ ++ L IT I+PL+++LLFERFLN DR++MPD DID   DRRDE+ 
Sbjct: 287 IYIGPGRGSAAGSLISFLLGITKINPLKYNLLFERFLNVDRVTMPDIDIDIQDDRRDEIA 346

Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
           +Y+  KYG+E  + I TF S+ AK A+RD+GR LQ+  + +D + K +     +    +A
Sbjct: 347 KYIVEKYGYEYCSYISTFQSIGAKMAIRDIGRYLQINLNIIDSISKSL---DQNETLEEA 403

Query: 492 IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
              +  F+      P   +LLE+++K+EG+ R    H AGI+I +  ++ + P Y +  +
Sbjct: 404 CLKNRVFKAEISEYP---KLLELAKKIEGIPRQHGIHPAGIIISNTKITDIAPTYSNS-T 459

Query: 552 DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL---SLIPFDDHET 608
           +L   Q  + ++E  GL+K DFLGLKTL++++   + +        L   +   F+D +T
Sbjct: 460 NLSQIQLPLNFLEDYGLLKIDFLGLKTLSIIKDIEEVIPNELRFDYLYDKNENIFNDKKT 519

Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
           + +L +  T GIFQLES GM+ A+  +  D   D++A++SL+RPGP+  I  Y N K   
Sbjct: 520 FDVLNSGLTEGIFQLESPGMKSAITKVSIDSFNDLVAIISLFRPGPMQYIDQYANGKKDP 579

Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
           + I  IHP  D ++K+T G+I+YQEQ+MQI Q +S  + S+AD+LRRA+ KK ++++ + 
Sbjct: 580 KTIKRIHPYYDEIVKDTFGIIVYQEQIMQIVQKISSMTFSQADLLRRAISKKDEKKLVEM 639

Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
           K  F  G  KN I K +   I+  +  FADYGFNKSHA AY+ I+Y+ A+ KT+Y   F 
Sbjct: 640 KSSFFEGGIKNNIKKDVLDEIYARIELFADYGFNKSHAVAYSYITYKMAYYKTNYKNVFY 699

Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A ++        I K+ ++A+  +I +  P +N       V ++ +Y  L  IKGVG  
Sbjct: 700 RALISNANGTHLTINKYVKEAKSVDISVQSPDINFSKKHAVVINSNLYLPLNMIKGVGGV 759

Query: 849 TARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               I+     +K F S  +   ++ +  +   ++ +L+ +     +G +   LL SL  
Sbjct: 760 ALEKIINTPKDNKKFSSFFELYLKLRNSGVGESIINALIKSNTFRTYG-NVNSLLNSLSI 818

Query: 908 IQK---------YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
            +              ++  + +    +F  E      K+ +    +E  S   + E  +
Sbjct: 819 AKNLYETFKLKVSRLKIQDEKIDDELVLFIKENNLLDRKVDIIDRDIETES---KYELEL 875

Query: 959 LG 960
           LG
Sbjct: 876 LG 877


>gi|260060840|ref|YP_003193920.1| DNA polymerase III subunit alpha [Robiginitalea biformata HTCC2501]
 gi|88784970|gb|EAR16139.1| DNA polymerase III alpha subunit [Robiginitalea biformata HTCC2501]
          Length = 1028

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 258/1035 (24%), Positives = 456/1035 (44%), Gaps = 111/1035 (10%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L  H+ YSL  G  S  ++L+    +    +A+TD NN  + L F ++A   G++P++G
Sbjct: 2    YLNCHTYYSLRYGTFSEVDLLELARENGVSCLALTDINNTSAGLNFVRRAPEFGVRPLLG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                  ++                   V L     GY  L   +S  +L  +        
Sbjct: 62   IDFRNGVESCF----------------VGLAKNNRGYMELNAFLSD-HLHGK------HP 98

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L       ++ +++                     E+ LL     F    Y+ +   R  
Sbjct: 99   LPERAPAFSDAVVIYP------------------FERVLLAELGDFAPHEYIGISV-RDL 139

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPD 251
             R   S +V+        LV      F ++ D+ AH +L A+ ++ ++S+  +  +  P+
Sbjct: 140  RRLPFSHLVE----RRDRLVVLQPVTFRNKRDFNAHRLLRAIDNNALLSKLPESEQAHPE 195

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
              +     +  +F++    LENT  +   CS          P+ ++      ++E+E  L
Sbjct: 196  DCMYALPNLAEVFAEYAFILENTRALMEGCSIHFDFSENRQPQNLDTY-TGSREEDEALL 254

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                  G+  R               R+RL  EL +I    F  YFLI  D +  A++  
Sbjct: 255  ERLCEEGMPYRY-------SAPGPQIRKRLAKELELIRAKGFVSYFLINWDIVSEARRRG 307

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
                 GRGSGA S+ AY L ITD+DP+   L FERF+N  R + PDFDIDF    R+ + 
Sbjct: 308  FFY-VGRGSGANSIVAYLLRITDVDPIELDLYFERFINLFRTNPPDFDIDFSWRDREAIT 366

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RY+ +++  + VA + T+ + + +  +R++G+   +P +++D+LC               
Sbjct: 367  RYIFDRF--QHVALLGTYVTFRERGIIRELGKVFGLPKAEIDQLC-------------DG 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
              + SR       D     +L   Q + G+  + S HA GI+I  +P+      +   + 
Sbjct: 412  SYESSRL------DGVARLVLRYGQLIRGMPNYLSVHAGGILIAGKPIHWFSATHLPPK- 464

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----VDLSL--IPFDD 605
                TQF+M   E AGL KFD L  + L  ++++L+   Q   +    VD+       +D
Sbjct: 465  GFATTQFDMVIAEDAGLYKFDILAQRGLAKIKEALEIARQNQPEATRGVDIHDIRKIKED 524

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
                 L+ +   +G F +ES  MR  L+ ++ D    ++A  S+ RPG   + ++  Y  
Sbjct: 525  PAVNELIRSAQCMGCFYVESPAMRMLLKKLEVDNYLGLVAASSIIRPGVSKSGMMREYIL 584

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK--I 721
            R    E++   HP++  ++ +T GV++YQE V+++A   +G SL EADVLRR M  K   
Sbjct: 585  RHRDPERVKQAHPVLLDIMPDTYGVMVYQEDVIKVAHYFAGLSLGEADVLRRGMSGKFRS 644

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EE ++ K  F++   + G ++++   I+E +A FA Y F K H+A+YAV SYQ+ +++ 
Sbjct: 645  REEFERVKAAFVANCRRKGYAESLISEIWEQVASFAGYAFAKGHSASYAVESYQSLFLRA 704

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            ++P+E+L A +        + + +  +AR    ++ PP +N   V  ++    IY  L  
Sbjct: 705  YFPLEYLVAVLN-NGGGFYRPECYVHEARMLGARVHPPCINRSGVANRIEGADIYLGLMY 763

Query: 842  IKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            ++ +       I+        F  LEDF  RV    ++   L  LV   A    G  + +
Sbjct: 764  LRELEGRVMDRIVRQRQLGGAFSDLEDFLDRVP---ISIEQLSILVRIDAFRSTGAEKHR 820

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL       K    + +     H  +F  ++  F    +L    +E +  +      +LG
Sbjct: 821  LLW------KAHLLLSRGGVADHPRLFPPQQTKFRI-PSLHGTELETAFTQM----ELLG 869

Query: 961  FYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            F     P D+  +P   + G + + E +    G  I +   +V+ +  KT  G R+ + T
Sbjct: 870  FCLCS-PFDLLEEPPANRNGCRHFPEYM----GRYIDIYGYLVTVKNTKTHNGKRMHFAT 924

Query: 1020 FSEPAKE-YEANFFP 1033
            F +   E ++   FP
Sbjct: 925  FIDLYGEVFDTVLFP 939


>gi|85057409|ref|YP_456325.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789514|gb|ABC65246.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 916

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 267/905 (29%), Positives = 462/905 (51%), Gaps = 71/905 (7%)

Query: 18  SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDI 77
           S YSLL+   SL  ++ K   +    +A++D +NL+    F +      I+PI+G +++ 
Sbjct: 9   SFYSLLQSLNSLETLVQKAKENNYDFVALSD-DNLYGMPTFLKLCHKYQIKPILGLKINF 67

Query: 78  DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
              + L              ++++     +G + LI++ + +    + K++ +I L+ + 
Sbjct: 68  FHNNQL-------------ATLLIYAKNDQGIKNLIQISTII----KNKETPQINLNKIA 110

Query: 138 EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE 197
            +G +GL  L  G +   D  FF +      +      K+F D L + +     +     
Sbjct: 111 NLG-KGLFTLIPGENPFFDEIFFRDQKDKFFQISTQLLKIF-DELVLGISYQNSFLELLS 168

Query: 198 SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY--LK 255
             ++  A   ++P V  N + + + +    + +L  + +    +Q D   +T D++    
Sbjct: 169 ENIIDFANHFQIPYVPVNKTCYDTFQAQPTYQILTQMENKKNDNQTDLSFLTKDNFDSTY 228

Query: 256 NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK----EEENEL 311
           N      +F  L + +           F ++    +  +F      D  +      ++ L
Sbjct: 229 NAQTHKKMFIYLKKLI-----------FSIKYQNYLPQKFFLPSFVDFLQPQKITAKDYL 277

Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
           +  +  GL     Q    K      Y+QRLD EL +IA M++  YFLIV D +++AKK  
Sbjct: 278 KQISYEGLR----QYINFKSPKYTKYQQRLDQELKIIADMEYDNYFLIVGDVVRYAKKQG 333

Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
           I VGPGRGS +GS+  + L IT+IDPL++ L+FERFLNP R +MPD D+DF  + RD +I
Sbjct: 334 ILVGPGRGSSSGSLVCFCLQITEIDPLQYELIFERFLNPQRKNMPDIDLDFPDNTRDLII 393

Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DPAHPVSLQ 490
           +YV  KYG + VA IITFG   ++ A+             ++ L K +P         + 
Sbjct: 394 QYVCQKYGTKHVASIITFGRFVSQKAI-------------INELVKFMPTVKEFQTKRVL 440

Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
           A  D     +    D  +  LL ++  +EG+ R   TH AGI++   PL Q++P+ +   
Sbjct: 441 AYLDKKSTYQKETLDLQMKNLLTMASYIEGMPRFTGTHPAGIILSQIPLYQIIPLQKGTH 500

Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
           ++L  TQ+    +E  GL+K DFLGL++LTL+ + +  + +   K  L  IP +D +T+ 
Sbjct: 501 NNLQQTQWEASDLESIGLLKIDFLGLRSLTLINQMVLAIQKNNFKFSLFKIPLNDKKTFE 560

Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
           LL    T+GIFQLES   +  L+ M P   ED+IAL++L RPGPID+  ++   ++ ++ 
Sbjct: 561 LLQQGKTIGIFQLESYNAKIFLQKMMPQKFEDLIALLALNRPGPIDSFNMFLKNRH-QKT 619

Query: 671 IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
                PLID +L+ T G+I+YQEQ+MQI  + + YSL++AD+ RRA+ KK K+ + ++K 
Sbjct: 620 TTFFSPLIDFILQPTYGIILYQEQIMQILAVFAKYSLAQADLFRRAISKKEKDLLLQEKN 679

Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            FI+ + + G   TIA  I++ + KFA+YGFNKSH+ AY++ISY+ A++K ++ + F+  
Sbjct: 680 NFIAQSKEQGRDLTIAYKIYDYILKFANYGFNKSHSVAYSLISYRMAYLKANHFIAFVIT 739

Query: 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
            +   + +  + +   ++  Q  I I PP + +    +   DN+++  L  IKG+  +  
Sbjct: 740 LLNDAIGDTSQTEILLKEVIQKGIIIEPPHIFSSQDKYYFQDNKLFLPLTIIKGINVSFC 799

Query: 851 RHIMEASAD--KPFD------------SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
           + +M+   +  K +             S + F  ++    L   +L +L+FAGA D  G 
Sbjct: 800 QELMKKQKNLIKEYQKLTKTSQSPLYYSFKTFKQQL-FPFLTEPLLTNLIFAGAFDKMGL 858

Query: 897 SRMQL 901
           +R  L
Sbjct: 859 NRNTL 863


>gi|86131543|ref|ZP_01050141.1| DNA polymerase III alpha subunit [Dokdonia donghaensis MED134]
 gi|85817988|gb|EAQ39156.1| DNA polymerase III alpha subunit [Dokdonia donghaensis MED134]
          Length = 1008

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 241/1035 (23%), Positives = 424/1035 (40%), Gaps = 107/1035 (10%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L  HS YSL  G +S   ++D  A       A+TD NN    L F + A   GI+PI+G
Sbjct: 2    YLNNHSFYSLRYGTISEVELVDLAAKQGLTCFALTDINNTSGCLSFIKNAQEKGIKPIVG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-RMYLLDQGKQSVRI 131
                                       + L     G+  +   +S  ++          I
Sbjct: 62   VDFRN----------------GNHQCYITLAKNNNGFLEINNFLSHHLHHKTSFPDHSPI 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                +                               E  L   K  F D  Y+ +  H+ 
Sbjct: 106  FKDVITIYPF--------------------------ENVLELEKTTFSDNEYIGIT-HKN 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTP 250
             ++ R S + +L +     LV  +   F  + D+  H +L A+  + ++S    +    P
Sbjct: 139  LNKLRFSPLSKLTHK----LVMLHTVSFRDKRDFNTHRLLRAIDKNMLLSMLPKKEEGHP 194

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            +H      ++   FS  P  L N   I + CS           + +       +++ +  
Sbjct: 195  EHTFIEAKDLRLQFSQYPHLLSNAEHILKSCSIYFNFKKGKPSQNLTTLLGSEERDYKK- 253

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L      GL  R       K       ++RL  EL++I + K+  +FLI    I++A+  
Sbjct: 254  LVALCKKGLPERY------KDNITYAVKRRLVKELSLIRQQKYVAFFLINWKIIEYARSK 307

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +     GRGSGA S+ AY L ITD+DP+   L FERF+N  R + PDFDIDF    R++V
Sbjct: 308  DYFY-VGRGSGANSIVAYLLRITDVDPIELDLYFERFMNLYRATPPDFDIDFSTWDREDV 366

Query: 431  IRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             RY+  ++G   +VA + ++ + +   A+R++G+   +P  ++D+L K            
Sbjct: 367  TRYIFEEFGSKAQVALLGSYVTFKHSGAVRELGKVFGLPKFEIDKLSK------------ 414

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                + S+       D     +++ +Q L G   + S HAAGI+I   P           
Sbjct: 415  -GRYNSSQL------DNIKKTIIKYAQILHGKPNYTSIHAAGILISQHPTHYFSATNLPP 467

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP-----FD 604
            +   P  QF+M   E  GL KFD LG + L  ++ ++  +      + L  I      F 
Sbjct: 468  K-GFPTVQFDMHIAEDVGLYKFDILGQRGLGKIKDAIAIIKDNNPGITLPDIHNARQFFT 526

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
            D +   +++    +G F +ES  MR  L  +  D    ++A  S+ RPG   + ++  Y 
Sbjct: 527  DQKINQMISNADCIGCFYVESPAMRMLLRKLSVDNYLTLVAASSIIRPGVSKSGMMREYI 586

Query: 663  NRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK- 720
             R    ++     HP++  ++ +T GV++YQE V+++A   +G  L EADVLRR M  K 
Sbjct: 587  LRHKDPKRAKQKGHPVLLDIMPDTYGVMVYQEDVIKVAHHYAGLDLGEADVLRRGMSGKY 646

Query: 721  -IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
              ++E    KE+F +     G    +   I+  +  FA Y F K H+A+YAV SYQ+ ++
Sbjct: 647  RSRQEFLMVKEKFEANCLARGEKIEVINEIWRQIESFAGYAFAKGHSASYAVESYQSLYL 706

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K ++P+E++ A++        + + + Q+A++    I PP +N   +   +  N IY   
Sbjct: 707  KCYFPLEYMVATVN-NGGGFYRTETYLQEAKKKGAIIHPPCINKSQIKTIIKGNNIYLGF 765

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
              ++ +       I+    +  F SL +F  RV    ++   L+ L+   A      ++ 
Sbjct: 766  QHLQSLEKKNIVAIINERHNGLFSSLHNFIDRVP---MSLEQLDLLIRIEAFKSLNINQR 822

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            QLL      + + +     +    + +F        +   L +F + N     +    +L
Sbjct: 823  QLLW-----EAHYKNNSSPKVKNQKELF----KVSINSFKLPEFYIPNFEKAMDQ-LEIL 872

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             F     P  + K            E +       I +   +++ +  +T  G  + + T
Sbjct: 873  SFSLYD-PFILLK---NPTTNTLLAEDLKQYINKKIEIFGYLITAKTTRTTNGKHMCFGT 928

Query: 1020 FSEPAKE-YEANFFP 1033
            F +      +   FP
Sbjct: 929  FLDRKGNWLDTVHFP 943


>gi|162417899|ref|YP_001604616.1| DNA polymerase III, alpha subunit [Yersinia pestis Angola]
 gi|162350871|gb|ABX84820.1| DNA polymerase III, alpha subunit [Yersinia pestis Angola]
          Length = 1174

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 274/976 (28%), Positives = 439/976 (44%), Gaps = 114/976 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L V + +SL E AL   N +         A+   D+ N+ S +   Q+A    +  I G 
Sbjct: 4   LMVRTDFSLGESALKAENAVKIARDAGYTAVISADSMNIASVIPL-QRAAGDDMAVICGV 62

Query: 74  Q----LDIDMQDNLKMTNQGKTP-----FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +     D   +   ++  + +                L+   +GY+ + EL++     +Q
Sbjct: 63  KLNVVDDPTYEHRARLAKESERYMESLVRDRSYCFTALIKNEQGYRDVCELMTLANKREQ 122

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                R+ L  L     +G I+L     G + +         A+           D  Y 
Sbjct: 123 FYFVPRLALDQLAAAYAKGNIILLTSDIGSVFQ-----RRDFAKIIGTLVTAGGRDNFYS 177

Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +  H   +      + +++A   ++  VA   + + + +D +  D+   V ++  + Q 
Sbjct: 178 VVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYEAVDDADIKDIAHMVTNNIKIDQP 237

Query: 244 DRPRVTPDHY-----LKNRSEMVSIFS---DLP--EALENTVE--IARRCSFILQVHAPI 291
            R R+           ++  E +  FS   D+P   A+ +T +  I   C++      P 
Sbjct: 238 HRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEACTWRWHELPPA 297

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVI 348
           LP+  + E           L   AVAGL  RL     G        + Y  RL +E++ +
Sbjct: 298 LPKMADDEPAT--------LMKLAVAGLRKRLTTKEFGYTPPASEHRVYVDRLKYEMDTL 349

Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
            R+ F GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFERF+
Sbjct: 350 TRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFI 409

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
           NP+R+ +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R   + 
Sbjct: 410 NPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIYGVD 469

Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            + +  + K   N     +SL+ + +  +               + + KL+ L R    H
Sbjct: 470 AADM-AVSKEFKNLEDDSLSLEELRE--QLASLDKYATKYPEAFKAACKLQSLMRGFGRH 526

Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
           AAG+++   PL +  P+   +R +     F+ ++ E  GLIK D LGL TL LL  +  +
Sbjct: 527 AAGMIVAGVPLVERTPVE--LRGNARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRY 584

Query: 589 LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ----PDCIEDI 643
           + +  G  ++L  IP DD +         T G+FQLES  MR+ L+ +     P   + +
Sbjct: 585 IKESTGEDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTV 644

Query: 644 IALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
           +A  +L+RPGPI + +   Y +   G     S+HP++D +  ET GVI+YQEQ M   +L
Sbjct: 645 VATTALFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDELTAETNGVILYQEQTMNATRL 704

Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS------------------- 742
           L+G++++EAD +R+A+GKK  E+M    E+F+  A    I                    
Sbjct: 705 LAGFTMAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWIDVEMEDGTTQRIHRAEHFKC 764

Query: 743 ---------------------------------KTIAVNIFELLAKFADYGFNKSHAAAY 769
                                            +T A  I++   K   Y FNKSH  AY
Sbjct: 765 EDGALRTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEIWDAFEKNGAYQFNKSHPVAY 824

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
           ++ISYQ+ W+KTHYP EF AA++T+     +K +   +DA  + I ++PP VN      +
Sbjct: 825 SLISYQSMWLKTHYPAEFFAAALTI--LGEDKHQGLVKDALTYGIHVLPPDVNVSSNRIE 882

Query: 830 V-----GDNRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRVDSK--KLNRR 880
           +     G   +Y   +A+KG      + IM A       F+SLE F   VD +    N R
Sbjct: 883 IRTLEDGSQVLYAPFSAVKGCSENGCQAIMRAREKVGGKFESLEQFEEAVDKRACACNSR 942

Query: 881 VLESLVFAGALDCFGY 896
           V ESL   GA      
Sbjct: 943 VRESLQKVGAFASIEP 958


>gi|165939425|ref|ZP_02227972.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|167422789|ref|ZP_02314542.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167470030|ref|ZP_02334734.1| DNA polymerase III [Yersinia pestis FV-1]
 gi|229897817|ref|ZP_04512972.1| DNA polymerase III alpha subunit [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229900269|ref|ZP_04515404.1| DNA polymerase III alpha subunit [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|165912613|gb|EDR31243.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166958282|gb|EDR55303.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|229686628|gb|EEO78709.1| DNA polymerase III alpha subunit [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229693398|gb|EEO83448.1| DNA polymerase III alpha subunit [Yersinia pestis biovar Orientalis
           str. PEXU2]
          Length = 1037

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 273/976 (27%), Positives = 439/976 (44%), Gaps = 114/976 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L V + +SL E AL   N +         A+   D+ N+ S +   Q+A    +  I G 
Sbjct: 4   LMVRTDFSLGESALKAENAVKIARDAGYTAVISADSMNIASVIPL-QRAAGDDMAVICGV 62

Query: 74  Q----LDIDMQDNLKMTNQGKTP-----FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +     D   +   ++  + +                L+   +GY+ + EL++     +Q
Sbjct: 63  KLNVVDDPTYEHRARLAKESERCMESLVRDRSYCFTALIKNEQGYRDVCELMTLANKREQ 122

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                R+ L  L     +G I+L     G + +         A+           D  Y 
Sbjct: 123 FYFVPRLALDQLAAAYAKGNIILLTSDIGSVFQ-----RRDFAKIIGTLVTAGGRDNFYS 177

Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +  H   +      + +++A   ++  VA   + + + +D +  D+   V ++  + Q 
Sbjct: 178 VVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYEAVDDADIKDIAHMVTNNIKIDQP 237

Query: 244 DRPRVTPDHY-----LKNRSEMVSIFS---DLP--EALENTVE--IARRCSFILQVHAPI 291
            R R+           ++  E +  FS   D+P   A+ +T +  I   C++      P 
Sbjct: 238 HRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEACTWRWHELPPA 297

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVI 348
           LP+  + E           L   AVAGL  RL     G        + Y  RL +E++ +
Sbjct: 298 LPKMADDE--------PATLMKLAVAGLRKRLTTKEFGYTPPASEHRVYVDRLKYEMDTL 349

Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
            R+ F GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFERF+
Sbjct: 350 TRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFI 409

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
           NP+R+ +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R   + 
Sbjct: 410 NPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIYGVD 469

Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            + +  + K   N     +SL+ + +  +               + + KL+ L R    H
Sbjct: 470 AADM-AVSKEFKNLEDDSLSLEELRE--QLASLDKYATKYPEAFKAACKLQSLMRGFGRH 526

Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
           AAG+++   PL +  P+   +R +     F+ ++ E  GLIK D LGL TL LL  +  +
Sbjct: 527 AAGMIVAGVPLVERTPVE--LRGNARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRY 584

Query: 589 LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ----PDCIEDI 643
           + +  G  ++L  IP DD +         T G+FQLES  MR+ L+ +     P   + +
Sbjct: 585 IKESTGEDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTV 644

Query: 644 IALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
           +A  +L+RPGPI + +   Y +   G     S+HP++D +  ET GVI+YQEQ M   +L
Sbjct: 645 VATTALFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDELTAETNGVILYQEQTMNATRL 704

Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS------------------- 742
           L+G++++EAD +R+A+GKK  E+M    E+F+  A    I                    
Sbjct: 705 LAGFTMAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWIDVEMEDGTTQRIHRAEHFKC 764

Query: 743 ---------------------------------KTIAVNIFELLAKFADYGFNKSHAAAY 769
                                            +T A  I++   K   Y FNKSH  AY
Sbjct: 765 EDGALRTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEIWDAFEKNGAYQFNKSHPVAY 824

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
           ++ISYQ+ W+KTHYP EF AA++T+     +K +   +DA  + I ++PP VN      +
Sbjct: 825 SLISYQSMWLKTHYPAEFFAAALTI--LGEDKHQGLVKDALTYGIHVLPPDVNVSSNRIE 882

Query: 830 V-----GDNRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRVDSK--KLNRR 880
           +     G   +Y   +A+KG      + IM A       F+SLE F   V+ +    N R
Sbjct: 883 IRTLEDGSQVLYAPFSAVKGCSENGCQAIMRAREKVGGKFESLEQFEEAVEKRACACNSR 942

Query: 881 VLESLVFAGALDCFGY 896
           V ESL   GA      
Sbjct: 943 VRESLQKVGAFASIEP 958


>gi|146301311|ref|YP_001195902.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
 gi|146155729|gb|ABQ06583.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
          Length = 1017

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 254/1031 (24%), Positives = 450/1031 (43%), Gaps = 110/1031 (10%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L  HS +SL  G + L++++ + A     A A+TD N +    +F +   A+GI+P++G
Sbjct: 2    YLNCHSFHSLRYGTIPLDDLIRQTADCGVTAAALTDINTVTGIYDFIKGCEASGIKPLVG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             +     +                   + L   A G  ++   ++               
Sbjct: 62   IEFRCRHKFRY----------------IGLAKNAAGLAQMNRFLTDHNFTG--------- 96

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
                               +   +  +F  + + A  +L       GD  ++ ++     
Sbjct: 97   -------------APLPEKAPAFESVYFIYALENAPAQL-------GDNEFIGIR----P 132

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPD 251
            D+     + +L       +V     +F ++ +Y  H +L AV  + ++S+          
Sbjct: 133  DQLSRLYMPELKKKIS-KMVILRPVVFRTKREYNLHRILRAVDLNELLSKLGSEDCCQKS 191

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
              +   +E+  ++ D P  ++NT  I   C+F     +P   +   K     +  +   L
Sbjct: 192  DMMIPETELTDLYKDYPLIIQNTRYIIEHCNFQYDFESPKNKKHYTKN----KAGDIALL 247

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
               A  GL  R        G H  + + R++ EL VI  ++F GYFLI  D I+++    
Sbjct: 248  TTLAEEGLVWRY-------GRHNPEAKARVEKELKVINDLEFCGYFLITWDIIRYSNSRG 300

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +  GRGSGA S+ AY L ITDI PL   L FERFLN +R S PDFDID+    RD ++
Sbjct: 301  F-LHIGRGSGANSIIAYCLGITDICPLELDLYFERFLNENRKSPPDFDIDWSWKERDVIL 359

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +Y+ ++YG+E VA   T    + ++  R+VG+   +P  ++D L K              
Sbjct: 360  KYIFDRYGYENVAFCGTNVEFKYRSIFREVGKVFGLPKDELDLLAKNPM----------- 408

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                    +    +  V  + +    LE      S H+ GI+I + PL+   P+    + 
Sbjct: 409  --------KLHQTNSIVSLVQQYGMMLEKYPNMRSMHSCGILISEEPLTNYTPLEMPPK- 459

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF--DDHET 608
              P+  F+M   E  G  KFD L  + +  +  ++  + Q RG+++++       ++   
Sbjct: 460  GFPIVLFDMHTAEDIGFDKFDILSQRGIGHIDDTVKIIEQNRGIRINIRDTRLSKNEQSA 519

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKN 666
               L    T+G F +ES  MR  L  ++ D  + ++A  S+ RPG   + ++  Y  R N
Sbjct: 520  NVYLAQGRTIGCFYIESPAMRGLLRRLKCDNYKTLVAASSIIRPGVAQSGMMKEYIFRHN 579

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK--IKEE 724
               K    HP+ +  L ET G+++YQE V++IA    G S ++ D+LRRAM  K   K  
Sbjct: 580  NPSKFEYFHPVFEKELGETYGIMVYQEDVIKIALHYGGLSAADGDILRRAMSGKGRSKAA 639

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            + K K+ F   AS  G  + ++  I+  +  FA Y F K+H+A+YAV SYQ+ ++K HYP
Sbjct: 640  LQKVKDDFFVAASAKGHPEELSREIYRQIESFAGYSFCKAHSASYAVESYQSLYLKVHYP 699

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEF+ A +        + + +  +AR     I  P VN    +  +    IY     ++G
Sbjct: 700  VEFMVAVIN-NQGGFYRTEIYVHEARMAGAVIHTPCVNKSQYETSLYGTDIYLGFMHLQG 758

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            + +  ++ I  E   +  + SLEDF +RV     N +VL   +F GA    G ++ QLL 
Sbjct: 759  LDSKLSQFIAYERDRNGIYKSLEDFINRVPMGIENVKVL---IFIGAFRFTGKTKNQLLV 815

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             +  +    +   +        +   E+     K+ + + SV   +    +E  +L F  
Sbjct: 816  QVSLLMNNFKPENR-------GLMLIEQPAKEFKLPVLERSVFEDAF---DEIELLNFPI 865

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S    D+ +   R  G     + +       +R+ A ++S +Q  T++G+ + + T+ + 
Sbjct: 866  SCTVFDLLQT--RHRGDVMVRDLL-KYHKKQVRMLAYLISTKQVPTKRGN-MYFGTWIDH 921

Query: 1024 AKE-YEANFFP 1033
                ++   FP
Sbjct: 922  EGAYFDTAHFP 932


>gi|31795434|ref|NP_857887.1| putative DNA polymerase III alpha subunit [Yersinia pestis KIM]
 gi|40787972|ref|NP_857689.2| DNA polymerase III alpha subunit [Yersinia pestis KIM]
 gi|52788118|ref|YP_093946.1| putative DNA polymerase III alpha chain [Yersinia pestis]
 gi|108793591|ref|YP_636745.1| DNA polymerase III [Yersinia pestis Antiqua]
 gi|108793791|ref|YP_636633.1| DNA polymerase III [Yersinia pestis Nepal516]
 gi|145597255|ref|YP_001154722.1| DNA polymerase III [Yersinia pestis Pestoides F]
 gi|167402528|ref|ZP_02307979.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|229904862|ref|ZP_04519972.1| DNA polymerase III alpha subunit [Yersinia pestis Nepal516]
 gi|270491053|ref|ZP_06208126.1| DNA polymerase III, alpha subunit [Yersinia pestis KIM D27]
 gi|294502044|ref|YP_003565781.1| DNA polymerase III [Yersinia pestis Z176003]
 gi|14194660|sp|O68770|DPO3A_YERPE RecName: Full=DNA polymerase III subunit alpha
 gi|3883104|gb|AAC82764.1| putative DNA polymerase III , alpha subunit [Yersinia pestis KIM
           10]
 gi|52538047|emb|CAG27472.1| putative DNA polymerase III alpha chain [Yersinia pestis]
 gi|108777855|gb|ABG20373.1| DNA polymerase III [Yersinia pestis Nepal516]
 gi|108782138|gb|ABG16195.1| DNA polymerase III [Yersinia pestis Antiqua]
 gi|145213023|gb|ABP42428.1| DNA polymerase III [Yersinia pestis Pestoides F]
 gi|167048094|gb|EDR59502.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|229678177|gb|EEO74283.1| DNA polymerase III alpha subunit [Yersinia pestis Nepal516]
 gi|262363938|gb|ACY60657.1| DNA polymerase III [Yersinia pestis D106004]
 gi|262364096|gb|ACY64432.1| DNA polymerase III [Yersinia pestis D182038]
 gi|270335034|gb|EFA45812.1| DNA polymerase III, alpha subunit [Yersinia pestis KIM D27]
 gi|294352515|gb|ADE66571.1| DNA polymerase III [Yersinia pestis Z176003]
 gi|320017589|gb|ADW01159.1| DNA polymerase III alpha subunit [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 1174

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 273/976 (27%), Positives = 439/976 (44%), Gaps = 114/976 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L V + +SL E AL   N +         A+   D+ N+ S +   Q+A    +  I G 
Sbjct: 4   LMVRTDFSLGESALKAENAVKIARDAGYTAVISADSMNIASVIPL-QRAAGDDMAVICGV 62

Query: 74  Q----LDIDMQDNLKMTNQGKTP-----FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +     D   +   ++  + +                L+   +GY+ + EL++     +Q
Sbjct: 63  KLNVVDDPTYEHRARLAKESERCMESLVRDRSYCFTALIKNEQGYRDVCELMTLANKREQ 122

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                R+ L  L     +G I+L     G + +         A+           D  Y 
Sbjct: 123 FYFVPRLALDQLAAAYAKGNIILLTSDIGSVFQ-----RRDFAKIIGTLVTAGGRDNFYS 177

Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +  H   +      + +++A   ++  VA   + + + +D +  D+   V ++  + Q 
Sbjct: 178 VVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYEAVDDADIKDIAHMVTNNIKIDQP 237

Query: 244 DRPRVTPDHY-----LKNRSEMVSIFS---DLP--EALENTVE--IARRCSFILQVHAPI 291
            R R+           ++  E +  FS   D+P   A+ +T +  I   C++      P 
Sbjct: 238 HRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEACTWRWHELPPA 297

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVI 348
           LP+  + E           L   AVAGL  RL     G        + Y  RL +E++ +
Sbjct: 298 LPKMADDE--------PATLMKLAVAGLRKRLTTKEFGYTPPASEHRVYVDRLKYEMDTL 349

Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
            R+ F GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFERF+
Sbjct: 350 TRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFI 409

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
           NP+R+ +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R   + 
Sbjct: 410 NPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIYGVD 469

Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            + +  + K   N     +SL+ + +  +               + + KL+ L R    H
Sbjct: 470 AADM-AVSKEFKNLEDDSLSLEELRE--QLASLDKYATKYPEAFKAACKLQSLMRGFGRH 526

Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
           AAG+++   PL +  P+   +R +     F+ ++ E  GLIK D LGL TL LL  +  +
Sbjct: 527 AAGMIVAGVPLVERTPVE--LRGNARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRY 584

Query: 589 LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ----PDCIEDI 643
           + +  G  ++L  IP DD +         T G+FQLES  MR+ L+ +     P   + +
Sbjct: 585 IKESTGEDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTV 644

Query: 644 IALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
           +A  +L+RPGPI + +   Y +   G     S+HP++D +  ET GVI+YQEQ M   +L
Sbjct: 645 VATTALFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDELTAETNGVILYQEQTMNATRL 704

Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS------------------- 742
           L+G++++EAD +R+A+GKK  E+M    E+F+  A    I                    
Sbjct: 705 LAGFTMAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWIDVEMEDGTTQRIHRAEHFKC 764

Query: 743 ---------------------------------KTIAVNIFELLAKFADYGFNKSHAAAY 769
                                            +T A  I++   K   Y FNKSH  AY
Sbjct: 765 EDGALRTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEIWDAFEKNGAYQFNKSHPVAY 824

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
           ++ISYQ+ W+KTHYP EF AA++T+     +K +   +DA  + I ++PP VN      +
Sbjct: 825 SLISYQSMWLKTHYPAEFFAAALTI--LGEDKHQGLVKDALTYGIHVLPPDVNVSSNRIE 882

Query: 830 V-----GDNRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRVDSK--KLNRR 880
           +     G   +Y   +A+KG      + IM A       F+SLE F   V+ +    N R
Sbjct: 883 IRTLEDGSQVLYAPFSAVKGCSENGCQAIMRAREKVGGKFESLEQFEEAVEKRACACNSR 942

Query: 881 VLESLVFAGALDCFGY 896
           V ESL   GA      
Sbjct: 943 VRESLQKVGAFASIEP 958


>gi|295132512|ref|YP_003583188.1| DNA polymerase III subunit alpha-2 [Zunongwangia profunda SM-A87]
 gi|294980527|gb|ADF50992.1| DNA polymerase III subunit alpha-2 [Zunongwangia profunda SM-A87]
          Length = 989

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 248/1037 (23%), Positives = 461/1037 (44%), Gaps = 117/1037 (11%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L  HS +SL  G  S N +L    +++   +A+TD NN  + L F ++A    I+P++G
Sbjct: 2    YLNCHSYFSLRYGTFSENELLKLAESNKATYVALTDINNTSACLSFLKQAKNFSIKPLVG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE-LVSRMYLLDQGKQSVRI 131
                  ++                   V++     G++ + + L S ++      ++  I
Sbjct: 62   IDFRNGVE----------------QQYVVIAKNRNGFREMNQHLSSHLHAKMNFDKNAPI 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                      EG  ++                     K L T K  F +  ++ +   R 
Sbjct: 106  L---------EGCYIIYPF-----------------IKVLETNKTEFMENEFIGVSV-RD 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTP 250
             ++ + S        +   LV   +  F S+ D+ AH +L A+ ++T++S+     +  P
Sbjct: 139  LNKLKFSGY----KNYTSKLVVLQSVSFRSKRDFNAHRLLRAIDNNTLLSKLAVEEQGNP 194

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            +  + ++ E+  +F + PE L NT  +A  C                    D  K +E +
Sbjct: 195  EDKMLSKEEVNEVFKEFPEILSNTKALAEGCEVEFTFSKKQNNNL---SSIDEAKADELK 251

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR      +E R  +         ++   RL+ EL  I ++ F  YFLI  + +Q+A+  
Sbjct: 252  LRKMCYDNIENRYPEA-------DEEVYARLNKELTAIIKLGFVSYFLINHEIVQYARSK 304

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            + PV  GRGSGA S+ AY + IT++DP+   L FERF+N +R S PDFDIDF    R++V
Sbjct: 305  DYPV-IGRGSGANSIVAYIIGITNVDPIELDLYFERFINENRSSPPDFDIDFSWRDREDV 363

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
             R++ N++  + VA + T+ + + +A +R++G+   +P +++D+L               
Sbjct: 364  TRFIFNRF--DHVALMGTYVTFKRRAVIRELGKVFGLPKAEIDKLS-------------- 407

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                  RF  + L    +  +L     + G   + S H+ GI+I +  +      +   +
Sbjct: 408  ----LGRFERSSLDKMEL-LVLNYGNLIAGFPNYLSVHSGGILILNDDIFNYGATFLPPK 462

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP-----FDD 605
             +    Q +M   E+ G+ KFD L  + L+ +  +L+ + Q      +  I        D
Sbjct: 463  -NFQTIQIDMNIAEEVGIHKFDILAQRGLSKITDTLELIRQNQPDAFIEDIDNISKFKKD 521

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
                +LL     +G+F +ES  MR  L  +Q D   +++A  S+ RPG     +   Y  
Sbjct: 522  PAINNLLKMGDCMGVFYVESPAMRGLLTKLQTDNYMNLVAASSIIRPGISSGGMKEEYIK 581

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-- 721
            R    ++    HP++  ++ +T G+++YQE VM++A   +G S  +ADVLRR M  K   
Sbjct: 582  RHRDPKRRDQGHPVMLEIMGDTYGIMVYQEDVMKVAHHFAGLSFDDADVLRRGMSGKKTS 641

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K +M+K + +F S   +   ++ I   ++E ++ FA Y F K H+A+YAV SYQ+ ++K 
Sbjct: 642  KGQMEKIEAQFRSNCKERRYTQQITDEVWEQISSFAGYAFPKGHSASYAVESYQSLYLKK 701

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            ++P+EF+ A +         ++ + Q+ ++    ++ P +N       +    IY     
Sbjct: 702  YFPLEFMVAVLN-NGGGFYSVETYIQEIKKCGGNVLAPCINHSDHPNTILGKNIYLGFGY 760

Query: 842  IKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK +   T + I+E       + SL+DF  RV+      R+L   +  GA    G  + Q
Sbjct: 761  IKELEAKTIQQILENRQFFGYYKSLDDFIDRVEISIEQLRIL---LKVGAFRFTGKDKHQ 817

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ-RVL 959
            LL      + Y + ++  + +    +F  +      +  L +F  + S++    +Q  +L
Sbjct: 818  LLW-----EAYFRKIKSKKNSNQPGLFKIQHK----EYVLPEF--QYSALIDAYDQIELL 866

Query: 960  GFYFSGHPLDVYKPILRK--MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            GF     PL  Y  +L+         +E    + G  + +   ++  ++  T  G  + +
Sbjct: 867  GF-----PLCNYFELLQDPVYDYTRVDELKNFV-GKKVSIYGKLICTKKTTTSGGKEMCF 920

Query: 1018 VTFSE-PAKEYEANFFP 1033
             TF +     ++   FP
Sbjct: 921  ATFYDIDYNIFDTVQFP 937


>gi|86143845|ref|ZP_01062213.1| DNA polymerase III alpha subunit [Leeuwenhoekiella blandensis MED217]
 gi|85829552|gb|EAQ48015.1| DNA polymerase III alpha subunit [Leeuwenhoekiella blandensis MED217]
          Length = 1002

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 257/1034 (24%), Positives = 450/1034 (43%), Gaps = 107/1034 (10%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L  HS++SL  G LS   +L          IA+TD NN  + L F +KA    I+P++G
Sbjct: 2    YLNCHSTFSLRYGTLSEEELLALAEHYDLDCIALTDINNTSAGLNFVRKAKEKNIKPVLG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                  ++                   V L    EGY  L   +++           +I 
Sbjct: 62   IDFRNGIE----------------QCYVTLAKNNEGYLELNNFLAQ-------HLHKKID 98

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDRLYVNLQRHRG 191
                                  I  AF    +  A +R L   K  F +  ++ +  H  
Sbjct: 99   FP-------------------EIAPAFENAFTIYAFERALELDKTHFTENEFIGIGIHD- 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTP 250
             ++ R SQ      T+   LV      F S++D+ AH +L A+  + ++S+     +  P
Sbjct: 139  LNKLRFSQY----STYHDKLVLLLPVSFNSKKDFNAHRLLRAIDLNCLLSKLPKEEQALP 194

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            D  +    ++ ++F D P+ + N+ E+ + C+   +       + + K     ++ + N+
Sbjct: 195  DEIMFAPKKIENLFKDYPQIVSNSQEVLKSCNLNFKFAKERQNQNL-KTVFGSEQNDYNK 253

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L      GL+ R  +          +   RL+ EL +I +  F  +FLI    I++A+  
Sbjct: 254  LLALCKKGLKERYEE-------ITTEITDRLEKELKLIKKKDFVSFFLINWKIIEYARSK 306

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +     GRGSGA S+ AY L ITD+DP+   L FERF+N  R S PDFDIDF    R++V
Sbjct: 307  DYFY-VGRGSGANSIVAYLLRITDVDPIELDLYFERFMNEYRSSPPDFDIDFSTWDREDV 365

Query: 431  IRYVQNKYGHER-VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
              Y+  ++G    VA + ++ + +   A+R++G+   +P +++D+L              
Sbjct: 366  TAYIFEEFGKNNQVALLGSYVTFKHSGAVRELGKVFGLPKTEIDKLS------------- 412

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                   +F+ + L D     +L+ +        + S HA GI+I D+P+      +   
Sbjct: 413  -----SGKFKASEL-DTISQLILKYAAYFHKKPNYLSIHAGGILISDKPIHYFSATHLPP 466

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP-----FD 604
            + + P  QF+M   E  GL KFD LG + L  ++ ++  + Q   +  L  I      F 
Sbjct: 467  K-NFPTVQFDMHVAEDVGLCKFDILGQRGLGKIKDAVSIIKQNQPEAQLLDIRNPKPFFT 525

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
            D     ++     +G F +ES  MR  L+ +  +  + ++A  S+ RPG   + ++  Y 
Sbjct: 526  DPNINAMIARAECIGCFYVESPAMRMLLKKLAVNDYQTLVAASSIIRPGVAKSGMMREYI 585

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-- 720
             R    E+    HP++  ++ +T G+++YQE V+++A   +  +L EADVLRR M  K  
Sbjct: 586  LRHRNSERRKEAHPVLWKIMPDTYGIMVYQEDVIKVAHHYAKLTLDEADVLRRGMSGKFR 645

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             +EE    K++F S    NG  + +   I+  +  FA Y F K H+A+YAV SYQ+ ++K
Sbjct: 646  SREEFQYVKDKFRSNCIANGEPEDVVDEIWRQIESFAGYAFAKGHSASYAVESYQSLYLK 705

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             ++P+E++ A++        K + +  +A+     I  P +N   +   +  N IY  L 
Sbjct: 706  CYFPLEYMVATLN-NGGGFYKAEFYIHEAKMHGASIEAPCINKSEIQTSIYGNTIYLGLQ 764

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             ++G+   T   I+       + S +DF  RV    ++    E L+  GAL   G  +  
Sbjct: 765  HLEGLEKKTMLGIINNRVHSKYTSYDDFIQRVP---ISLEQQEILIRIGALRSLGKDKHS 821

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL      + + +          ++ F      F    TL  F        F++   +LG
Sbjct: 822  LLW-----EAHYKENTIPENESQQSFFKISLQNF----TLPTFKTSKVEDAFDH-MELLG 871

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            F     P  + K  L         + +      N+++A  +V+ +  KT KG R+ + TF
Sbjct: 872  FSLFN-PFFLMKKSLADY---LLAKELKLYIDQNVKVAGYLVTFKNTKTAKGLRMIFGTF 927

Query: 1021 SEPAKE-YEANFFP 1033
             +      +   FP
Sbjct: 928  LDLDGAWIDTVLFP 941


>gi|332170372|gb|AEE19627.1| DNA polymerase III, alpha subunit [Krokinobacter diaphorus 4H-3-7-5]
          Length = 1010

 Score =  555 bits (1431), Expect = e-155,   Method: Composition-based stats.
 Identities = 247/1034 (23%), Positives = 448/1034 (43%), Gaps = 106/1034 (10%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L  HS +SL  G +S   +LD    +     A+TD NN    L F ++A    I+PIIG
Sbjct: 2    YLNNHSYFSLRYGTISEEELLDLAIHEGCNHFALTDINNTSGCLNFVRRAKEKNIKPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                 D ++N K               V L    +G+  +   +S+ +L +   ++    
Sbjct: 62   V----DFRNNTKQ------------CYVALAMNNQGFLEINNYLSK-HLHN---KTPFPD 101

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
                Q    + +I++            F N  ++        K  F    Y+ +   R  
Sbjct: 102  ----QAPHFQNVIII----------YPFENVMELG-------KTTFTSNEYIGV---RAK 137

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPD 251
            D Y+  +   L+ +    LV  +   F  + D+  H +L A+  + ++S      + +P+
Sbjct: 138  DIYKL-KFSSLS-SLTKKLVILHTVSFRDKRDFNTHRLLRAIDTNVLLSTLPHTDQGSPN 195

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
              + +R E+  +F D P  +ENT  + + C            + +       + + +  L
Sbjct: 196  DLMYSRKEIAQVFKDYPSLIENTNNLLQECKIDFNFSKDKPSQNLTTLLKSPEADYKK-L 254

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                  GL+ R               + RL  EL++I R+ +  +FLI    I++A+  +
Sbjct: 255  LELCEKGLKDRY-------EVVDNIIKGRLKKELDLIKRLDYVAFFLINWKIIEYARSKD 307

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
                 GRGSGA S+ AY L ITD+DP+   L FERF+N  R + PDFDIDF    R++V 
Sbjct: 308  YYY-VGRGSGANSIVAYLLRITDVDPIELDLYFERFMNLYRATPPDFDIDFSTWDREDVT 366

Query: 432  RYVQNKY-GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
             Y+  ++ G+ +VA + ++ + +   A+R++G+   +P  ++D+L     +    P SL 
Sbjct: 367  DYIFKEFKGNHQVALLGSYVTFKHSGAVRELGKVFGLPKYEIDKLS----DGRYDPNSLD 422

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
             I                  +L+ +Q L G   + S HAAGI+I  +P+          +
Sbjct: 423  DIK---------------KLVLKYAQVLHGRPNYTSIHAAGILISSKPIHYFSATNLPPK 467

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL-----SLIPFDD 605
               P  QF+M   E  GL KFD LG + L  ++ ++  +     +V L     +   F D
Sbjct: 468  -GFPTVQFDMHIAEDVGLYKFDILGQRGLGKIKDAVAIIKHNNPRVALPDIHNAKQFFTD 526

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
                 +++    +G F +ES  MR  L+ +       ++A  S+ RPG   + ++  Y  
Sbjct: 527  DRINEMISQADCIGCFYVESPAMRMLLKKLGVRDYLTLVAASSIIRPGVSKSGMMREYIL 586

Query: 664  RKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-- 720
            R    ++     HP++  ++ +T GV++YQE V+++A   +G  L EADVLRR M  K  
Sbjct: 587  RHKDPKRAEREGHPVLLRIMPDTYGVMVYQEDVIKVAHHYAGLDLGEADVLRRGMSGKYR 646

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             +EE  + KE+F +     G S  +   ++  +  FA Y F K H+A+YAV SYQ+ ++K
Sbjct: 647  SREEFLQVKEKFKNNCLAKGESIAVVNEVWRQIESFAGYAFAKGHSASYAVESYQSLYLK 706

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             ++P+E++ A++        + + +  +A++    + PP +NT  +   +    IY    
Sbjct: 707  CYFPLEYMVATIN-NGGGFYRTETYVHEAKKKGAIVHPPCINTSDIQTTIHGKDIYLGFQ 765

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             ++         I+ A  D PF SL+DF  RV    ++   L+ L+   A      ++  
Sbjct: 766  HLQTFEKKNIVLIINARIDGPFKSLDDFLERVP---ISLDQLDLLIRVEAFRSIKDNQRS 822

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL      + + +   +   +  + +F            L +F + +    F+    +L 
Sbjct: 823  LLW-----EAHYKNNARPSIDNQKELF----KVSITSFKLPEFYIPDVEKAFDQ-IEILS 872

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                  P  + + I     IK   + +       + +   +V+     T  G+R+ + TF
Sbjct: 873  LSLYD-PFILLESI---PTIKILAKDLYLHLNKTVEIYGYLVTANNTGTSNGNRMSFGTF 928

Query: 1021 SEPAKE-YEANFFP 1033
             +   +  +   FP
Sbjct: 929  LDYNGDWIDTVHFP 942


>gi|213582268|ref|ZP_03364094.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 520

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 223/523 (42%), Positives = 316/523 (60%), Gaps = 17/523 (3%)

Query: 107 EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
            GYQ L  L+S+ Y    G     I   WL E+  EGLI+L+GG  G + R     +  +
Sbjct: 1   TGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQAL 59

Query: 167 AEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDY 225
            E+ +  ++  F DR ++ L R    D        V+LA    LP+VATN+  FL  +D+
Sbjct: 60  VEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDF 119

Query: 226 EAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
           +AH++ +A+     +    RP   +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  
Sbjct: 120 DAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVT 179

Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRL 341
           +++    LP+F   +        E+ L  K+  GLE RLA        +     +Y +RL
Sbjct: 180 VRLGEYFLPQFPTGDM-----TTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERL 234

Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
           D EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F 
Sbjct: 235 DIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFD 294

Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
           LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDV
Sbjct: 295 LLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDV 354

Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
           GR L  PY  VDR+ KL+P DP   +  +A   + +  E   AD  V  L+++++KLEG+
Sbjct: 355 GRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGV 413

Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
            R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT+
Sbjct: 414 TRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTI 473

Query: 582 LQKSLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTKGTLG 619
           +  +L+ + +R        +D++ IP DD +      T G  G
Sbjct: 474 INWALEMINKRRAKNGEPPLDIAAIPLDDKKRLRHAATLGNHG 516


>gi|291320098|ref|YP_003515356.1| DNA polymerase III subunit alpha [Mycoplasma agalactiae]
 gi|290752427|emb|CBH40398.1| DNA polymerase III, alpha subunit [Mycoplasma agalactiae]
          Length = 977

 Score =  552 bits (1422), Expect = e-154,   Method: Composition-based stats.
 Identities = 285/1036 (27%), Positives = 478/1036 (46%), Gaps = 114/1036 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+ L   + YS LE  + + +++     + + A+ ++D NN+F+  EF ++  A  I+PI
Sbjct: 4    FIDLYNTTEYSFLESLIKVKDLVRLSKENGKRAVVLSDHNNMFALGEFLKQCAAYEIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            I                 G          +LL    EG++ +  L+     L + ++ +R
Sbjct: 64   I-----------------GVDLDVEESRFILLAKNYEGFKLINSLI-----LKKSREEIR 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                 L +I ++ L ++   S+G                            LY   + H+
Sbjct: 102  -----LNDIISDNLFIIDHPSNG----------------------------LYAKNEHHK 128

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D   ++  +    +     +    +  +  ED E  ++L+ + ++    + +      
Sbjct: 129  LSD--NKNYYISSPDSSIPNSIYVKENKLIDVEDNETLNILLKLGNNK---EANYNFSYF 183

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            + Y           SD    L     I   C+         L  F          E E +
Sbjct: 184  EDY--TTD------SDF---LARINFIVDNCNVTFPKKELKLASFC---------ESEEK 223

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                 +  ++  LA+   A   +      R+++E +VI ++ F  YFLI++D I++A  N
Sbjct: 224  NYELFIEKIKQGLAKHKKALLPYKTAVNDRINYECSVIKKLGFINYFLIISDMIEYADNN 283

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I +GPGRGS AGS+ +Y L IT I+PL+++LLFERFLN D++S PD DID   DRRDE+
Sbjct: 284  GISIGPGRGSAAGSLISYLLGITKINPLKYNLLFERFLNIDKVSWPDIDIDIQDDRRDEI 343

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
              Y+QNKYG  RVA I TF ++  K A+RDVGR L +P S V+R+ K I     +    +
Sbjct: 344  FAYLQNKYGKSRVAVISTFQTMGTKQAIRDVGRMLDIPLSDVNRISKSINAFANYSSIEE 403

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
              A +  F +   +    ++ +    KL+GL R    HAAG++I D+ L++ VP++ +  
Sbjct: 404  EFAKNLTFNKEVSSLKDYEKFINHVSKLQGLPRQYGIHAAGLIISDKDLNEYVPVFENAY 463

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL---SLIPFDDHE 607
            S L V Q  M+++E  GL+K D LGLKTLT ++     +++  +   L   + +   D  
Sbjct: 464  SFLQV-QVPMEFVEDFGLLKIDLLGLKTLTEIKHIEKRISKLKLFDQLVYENDLELQDPM 522

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
              +LL    T G+FQ+ESSGM+  ++ +     ED+ A++SLYRPGP + I  Y N +  
Sbjct: 523  AINLLNNGNTEGLFQIESSGMKSTIKRVGIQSFEDLFAIISLYRPGPKEYIKDYANNRKN 582

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             + I  I P+ D ++  T G+IIYQEQ+M+IAQ ++  S ++AD+LRRA+ KK + E+ K
Sbjct: 583  PKLIEKIDPVYDEIVAPTYGIIIYQEQIMEIAQAVAKMSFAQADLLRRAISKKNEVELHK 642

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +  F  G  +N  S      I++ + KFA YGFNKSHA +YA ++ + A+ K  YP  +
Sbjct: 643  YRNTFFEGGLRNNFSIESLTKIYDKIEKFAQYGFNKSHAVSYAYLTMKMAYYKARYPQVY 702

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             +A ++    +  KI  F  + +  N  +  PS+        V +  IY     IKG+G 
Sbjct: 703  FSALISNSYGDQNKIASFVNELKNMNFSVYSPSIIHFTNSAIVDNGDIYLPFNMIKGLGA 762

Query: 848  TTARHI-MEASADKPFD--SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
             + + I ++   +  +   SL +   R+    +   ++ +L+ A     FGY     +  
Sbjct: 763  ESIKKIALDIKENGQYKDLSLFEILLRLRFAGIKNSMISTLIRANVFRNFGY--QDYISG 820

Query: 905  LDNIQKYAQWVEKNRTNKHENIFA------HEKGTFSDKITLEKFSVENSSVRFENEQRV 958
            +D +       E N  +K  N FA        +G       +E  S  N      NE  +
Sbjct: 821  VDLLM----QEEYNLLSKGANSFADIAKNLDFEGYKKASENIEMQSKFNLEEESRNEIEL 876

Query: 959  LG-FYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            LG  Y      + YK     K       + +  ++G+       +V K++ K +      
Sbjct: 877  LGNIY------NAYKTVQYEKKYKYRLSDLL-KMQGSFSTAI-EIVVKKEPKDK---PYA 925

Query: 1017 WVTFSEPAKEYEANFF 1032
             +   +    Y   FF
Sbjct: 926  IIEVCDRTLNY--TFF 939


>gi|31544436|ref|NP_853014.1| DNA polymerase III subunit alpha [Mycoplasma gallisepticum str.
           R(low)]
 gi|31541281|gb|AAP56582.1| DNA polymerase III alpha subunit [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930492|gb|ADC30431.1| DNA polymerase III alpha subunit [Mycoplasma gallisepticum str.
           R(high)]
          Length = 1023

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 261/906 (28%), Positives = 417/906 (46%), Gaps = 96/906 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV+L   S YSLL   LS++ I+D    + Q  + +TD N L+ A+EF   A    + PI
Sbjct: 2   FVNLNTRSYYSLLSTNLSVSEIIDFAVKNNQTHVCLTDLNVLYGAVEFYNLAKKNHLIPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG ++                   T   +VL+     GY  LI++ S      +      
Sbjct: 62  IGLEIF---------------DHSTNSELVLIAKNNSGYLNLIKISSFASSNLEF----- 101

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                L +   E L ++        D        ++A                       
Sbjct: 102 ----DLFKYLDENLFVIVKSGDFKWDHVNCLKKKELA----------------------- 134

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
               +       L     L ++  N              +        V++         
Sbjct: 135 ----FNFVNCYDLEKKVGLNVI--NAVSMKQAGKRSKFQIDELYNSQLVLASP------- 181

Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCS--FILQVHAPILPRFIEKECDDIQKEEE 308
                +  +    FS   + L+   ++ ++CS   +  +    + ++   +  D     +
Sbjct: 182 ---FLSTEKAKKQFSQ--KQLDRLNDLVQQCSGWDLDNLTKNSIIKYHTPKGFDG----D 232

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             L          R       +   A D ++RL++EL +I ++ FS YFL V DFI  AK
Sbjct: 233 QYLVELCQT----RFNDLLNKRLIRASD-QKRLNYELAIIKKLNFSDYFLFVYDFINHAK 287

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
           +  I +GPGRGS AGS  +Y L IT I+P+ + L+FERFLNP R SMPD D+D    RR+
Sbjct: 288 QQGIVIGPGRGSAAGSFISYLLNITTINPISYGLIFERFLNPQRKSMPDIDVDIMDSRRE 347

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
           EV+ Y+ NKY  + VA IITF  ++ K A+RDV R L +  S+ D +   +  D      
Sbjct: 348 EVVDYLFNKYSKDNVAHIITFQRIKVKNAIRDVCRVLDLKTSETDEVINFVSYDEISDWE 407

Query: 489 LQ----AIADDSRFREARLADPSVDR-----------LLEISQKLEGLYRHASTHAAGIV 533
                 A+       E  L      R           + +++Q +  + R    HAAG+V
Sbjct: 408 KNQNATALKKVLNCNECDLDQKKCKRSGAVSCYVISKIFDLAQTIFNVPRQTGLHAAGVV 467

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QR 592
            G+  L+Q +P+     ++  V+QF+M+++E+ GL+K D LGLKTLT++ +    +    
Sbjct: 468 CGNDALTQTIPLQY--LNNRSVSQFSMEYLEQFGLMKIDLLGLKTLTIIDEINSLVKLNY 525

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               D++ IP ++  T++LL    T G+FQLES GM+  L+ + P+ IEDI  + +LYRP
Sbjct: 526 DRDFDINNIPLNNKNTFNLLKKGYTKGVFQLESLGMQNVLKKVLPESIEDISIISALYRP 585

Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           GP DNI  Y  R+    +   +   +  +LK T G+IIYQEQV+  A +++ +  ++AD 
Sbjct: 586 GPQDNIDEYVKRRFSNTEFNYLSEDLIEILKPTHGIIIYQEQVINTAMVVANFDAAQADS 645

Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRA+ KK +  + K K+ FI  A KN  S+  A+ IFE L KFADYGFN SH+ +YA +
Sbjct: 646 FRRAISKKDEALLLKDKKAFIEQAIKNRYSEQKALEIFEYLHKFADYGFNHSHSLSYAFL 705

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-- 830
           +YQ A++K +YP EF    +   +D+  K+  +  +  + NI I+ P++N     F +  
Sbjct: 706 AYQMAYLKANYPKEFYLILLKNNVDSKVKLTDYFIEIIERNIGIIKPNINLSDWSFSLSA 765

Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
              +I      I G+G   A  I++A  +K F+   D    +    + + + + LV  G 
Sbjct: 766 DHQKIILGFNMINGLGNENANKIVQARNNKQFEGFIDCLINLAKNGITKSLFDKLVNVGV 825

Query: 891 LDCFGY 896
            D F  
Sbjct: 826 FDQFKL 831


>gi|120609220|ref|YP_968898.1| DNA-directed DNA polymerase [Acidovorax citrulli AAC00-1]
 gi|120587684|gb|ABM31124.1| DNA polymerase III, alpha subunit [Acidovorax citrulli AAC00-1]
          Length = 668

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 178/690 (25%), Positives = 311/690 (45%), Gaps = 41/690 (5%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           + +     P +V L+  S+++ L GA     ++ +        +A+ D  ++   +    
Sbjct: 1   MNRRPRTIPDYVELRCVSNFTFLRGASDPEELVRRAQELGYSGLALADECSMAGVVRAHV 60

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            A AAG++ I+G Q  +          Q +T      ++V+L     GY  L E ++++ 
Sbjct: 61  AAKAAGLRLILGAQFCV----------QPRTAEEARFTVVVLARNLNGYGNLCEFITKLR 110

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                K    +    +        + L        DR       + A    L   + F  
Sbjct: 111 -RSSAKGEYHLTQGQITGAELADCLALLCP-----DRPSTDAQLEAAGTWAL---QQFRG 161

Query: 181 RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           R ++ + + R  D      ++  LA    LPLVA  +            DVL A      
Sbjct: 162 RCWIGVDQVRQLDDEAWLHRMRTLAELTALPLVAVGDVHMHVRSRKPLQDVLTATRIGKP 221

Query: 240 VSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           +++       + + +L+ R  +   F    + L  T+ +A RCSF +       P  +  
Sbjct: 222 LTECGHALHRSAERHLRTRLRLAQTFP--ADLLAETLNVAARCSFSIDELKYQYPDEVVP 279

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                     + LR     G   R  +G       +   + +++ EL +I  +++  YFL
Sbjct: 280 RG----HTAASFLRQVTYEGAGRRWPEGI------SPTVQAQIEHELELICELRYEHYFL 329

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V D + +A+  +I +  GRGS A SV  Y L +T++DP R S+LFERF++ +R   PD 
Sbjct: 330 TVYDIVAFARSRHI-LCQGRGSAANSVVCYCLGVTEVDPARMSVLFERFISRERNEPPDI 388

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DF   RR+EVI+Y+  KYG +R A   T  S + K+A+RDVG+AL      +D L + 
Sbjct: 389 DVDFEHQRREEVIQYLYTKYGRDRAALTATVISYRPKSAIRDVGKALGFDLQTLDALAEG 448

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                   + L+   +        ++D +V +L+ ++ +L G  RH S H  G V+    
Sbjct: 449 QKWFDGEDIRLERFEELG----MSVSDLAVRQLITLTTQLIGFPRHLSQHTGGFVLTRDR 504

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597
           LS++VP+     +D  V +++   ++ AGL+K D L L  L+ ++++LD +  +RG    
Sbjct: 505 LSRMVPIENASMADRTVIEWDKDDLDAAGLLKVDVLALGMLSAIRRALDMIGLRRGYAFG 564

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           +  IP +D +TY ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI  
Sbjct: 565 MQDIPAEDSDTYDMICRADTIGVFQIESRAQMSMLPRLRPRCFYDLVIEVAIVRPGPIQG 624

Query: 658 IV--VYNNRKNGKEKIVSIHPLIDPMLKET 685
            +   Y NR+ GKE +      +   L  T
Sbjct: 625 GMVHPYLNRRQGKEPVTYPSEALKTALGRT 654


>gi|300772563|ref|ZP_07082433.1| DNA polymerase III alpha subunit [Sphingobacterium spiritivorum ATCC
            33861]
 gi|300760866|gb|EFK57692.1| DNA polymerase III alpha subunit [Sphingobacterium spiritivorum ATCC
            33861]
          Length = 972

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 240/1034 (23%), Positives = 448/1034 (43%), Gaps = 117/1034 (11%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L   + +S   G  S   +++   A     +A+T+ NN   + +F  K    GI+PI+G
Sbjct: 2    YLNCKTWFSYHYGTFSSKQLVEDARALDIHTLALTNINNTADSWDFVLKCREQGIKPILG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
             ++  D                 V   +LL     G  ++ + +S      +       +
Sbjct: 62   TEIRNDH----------------VFCYILLARNETGLFQINQFLSAYNQRKENFPAEPEL 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L  I   G   ++    G                 L+  +    +R  + LQ+   
Sbjct: 106  STEHLWIIYRYGQKSVSALREGE----------------LIGLRPQDLNR--LELQQDLA 147

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPRVTP 250
             DR+                V  +   F     +  H +L A+A +T++S+         
Sbjct: 148  ADRF----------------VMLSPVTFQDRTYFNLHRLLRAIARNTLLSKLLPEDIAGS 191

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            D  L++  E+V  F+  P  +  T+++A  C   +++      ++     +D +    + 
Sbjct: 192  DEMLQSEVELVRQFARFPTVISRTIQVADSCHISMELKTDKNRKYFTTTEEDDR----HL 247

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A+ G  +R        G   ++  +R++ EL +I +  F+ YFLI+ D +++A + 
Sbjct: 248  LRKLAMEGCVMRY-------GTEHKEAFERVEKELKMIGKQGFNAYFLIIWDILRYAHER 300

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
                  GRGSGA S+ AY L ITD+DP++  L FERFLNPDR S PDFDIDF    RD +
Sbjct: 301  GF-YHVGRGSGANSIVAYCLRITDVDPIKLDLYFERFLNPDRSSPPDFDIDFSWKDRDAI 359

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
              Y+  +YG + VA +  + + + +A +R++G+   +P +++D+L               
Sbjct: 360  FDYMFKRYGRQHVALLGMYSTFKRRAIIRELGKVFGLPKAEIDQLVAQ------------ 407

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                    RE R  D     + +  Q LE    H S HA G++I ++P+     +    +
Sbjct: 408  --------REWRTEDKIQGWIHKYGQLLEHFPNHLSVHAGGVLISEKPICHYAAVELPPK 459

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP--FDDHE 607
             D      +M   E+ GL KFD L  + L  ++ +L  + +     +D+  +   F+D  
Sbjct: 460  -DFQTIHMDMFEAERVGLFKFDILSQRGLGHIKDALQLIEENTGKHIDIHQVERFFEDPL 518

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRK 665
                + +  T+G F +ES  MRQ L  +Q      ++A  S+ RPG   + ++  Y  R 
Sbjct: 519  LAEKIRSGDTIGCFYIESPAMRQLLGKLQCSDYLTLVAASSIIRPGVAQSGMMKQYIERY 578

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE- 724
            + ++K++ +HP +  +L ET GV++YQE V+++A   +G SL +AD+LRRAM  K + E 
Sbjct: 579  HDRDKVLYLHPKMKELLAETFGVMVYQEDVIKVAHHFAGISLDQADILRRAMSGKYRSEN 638

Query: 725  -MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
              +K ++ F     + G  + +   ++  +  F  Y F K H+A++AV SYQ+ ++KT+Y
Sbjct: 639  KFEKLRQTFFDNCRERGYEEQVTREVWRQMESFGGYSFAKGHSASFAVESYQSLFLKTYY 698

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P EF  A +        + + + Q+  +    +  P +N       + ++ +Y  L  ++
Sbjct: 699  PREFYVAVIN-NFGGFYRTEFYFQELFKTGAHVQLPCINHSQYYTNIVNDTVYVGLIHLQ 757

Query: 844  GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            G+    A +I+ E   +  +  L DF +R+         L  L+   AL   G ++  LL
Sbjct: 758  GLEEKFAHNIITERKKNGIYRDLNDFIARL---SPGMEQLNLLIRIDALRFTGKNKKALL 814

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
                     A ++   +     ++F   +  F      E+  +E+   +      ++GF 
Sbjct: 815  W-------EANFMTTRQQILEVSLFETPELDF-QLPEFEEEPMEDYKDQL----ELMGFI 862

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                    +  +L    +         +   G  + +   +V+ ++  T +  R+ + TF
Sbjct: 863  VGD-----FFDLLDPKYLTDTVHVRDLVHLLGKEVSMIGRLVTIKETSTIRKERMVFGTF 917

Query: 1021 SEPAKE-YEANFFP 1033
             +   +  +   FP
Sbjct: 918  LDCNADWLDTVHFP 931


>gi|284931595|gb|ADC31533.1| DNA polymerase III alpha subunit [Mycoplasma gallisepticum str. F]
          Length = 1023

 Score =  549 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 263/911 (28%), Positives = 413/911 (45%), Gaps = 106/911 (11%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV+L   S YSLL   LS++ I+D    + Q  + +TD N L+ A+EF   A    + PI
Sbjct: 2   FVNLNTRSYYSLLSTNLSISEIIDFAVKNNQTHVCLTDLNVLYGAVEFYNLAKKNHLIPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG ++                   T   +VL+     GY  LI++ S             
Sbjct: 62  IGLEIF---------------DHSTNSELVLIAKNNSGYLNLIKISSFASSNLDF----- 101

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                L +   E L ++        D        ++A                       
Sbjct: 102 ----DLFKYLDENLFVIVKSGDFKWDHVNCLKKKELA----------------------- 134

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
               +       L     L ++                + +           +       
Sbjct: 135 ----FNFVNCYDLEKKVGLNVI----------------NAVSMKQAGKRSKFQIDELYNS 174

Query: 251 DHYLKNR----SEMVSIFSDLPEALENTVEIARRCS---FILQVHAPILPRFIEKECDDI 303
              L +      +    FS   + L+   ++ ++CS           I+     KE D  
Sbjct: 175 QLVLASPFLSTEKAKKQFSQ--KQLDKLNDLVQQCSGWDLDNLTKNSIIKYHTPKEFD-- 230

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               +  L          R       +   A D ++RL++EL +I ++ FS YFL V DF
Sbjct: 231 ---SDQYLVELCQT----RFNDLLNKRLIRASD-QKRLNYELAIIKKLNFSDYFLFVYDF 282

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           I  AK+  I +GPGRGS AGS  +Y L IT I+P+ + L+FERFLNP R SMPD D+D  
Sbjct: 283 INHAKQQGIVIGPGRGSAAGSFISYLLNITTINPISYGLIFERFLNPQRKSMPDIDVDIM 342

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             RR+EV+ Y+ NKY  + VA IITF  ++ K A+RDV R L +  S+ D +   +  D 
Sbjct: 343 DSRREEVVDYLFNKYSKDNVAHIITFQRIKVKNAIRDVCRVLDLKTSETDEVINFVSYDE 402

Query: 484 AHPVSLQ----AIADDSRFREARLADPSVDR-----------LLEISQKLEGLYRHASTH 528
                      A+       E  L      R           + +++Q +  + R    H
Sbjct: 403 ISDWEKNQNATALKKVLNCNECDLDQKKCKRSGAVSCYVISKIFDLAQTIFNVPRQTGLH 462

Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
           AAG+V G+  L+Q +P+     ++  V+QF+M+++E+ GL+K D LGLKTLT++ +    
Sbjct: 463 AAGVVCGNDALTQTIPLQY--LNNRSVSQFSMEYLEQFGLMKIDLLGLKTLTIIDEINSL 520

Query: 589 LA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
           +        D++ IP ++  T++LL    T G+FQLES GM+  L+ + P+ IEDI  + 
Sbjct: 521 VKLNYDRDFDINNIPLNNKNTFNLLKKGYTKGVFQLESLGMQNVLKKVLPESIEDISIIS 580

Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
           +LYRPGP DNI  Y  R+    +   +   +  +LK T G+IIYQEQV+  A +++ +  
Sbjct: 581 ALYRPGPQDNIDEYVKRRFSNTEFNYLSEDLIEILKPTHGIIIYQEQVINTAMVVANFDA 640

Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
           ++AD  RRA+ KK +  + K K+ FI  A KN  S+  A+ IFE L KFADYGFN SH+ 
Sbjct: 641 AQADSFRRAISKKDEALLLKDKKAFIEQAIKNRYSEQKALEIFEYLHKFADYGFNHSHSL 700

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
           +YA ++YQ A++K +YP EF    +   +D+  K+  +  +  + NI I+ P++N     
Sbjct: 701 SYAFLAYQMAYLKANYPKEFYLILLKNNVDSKVKLTDYFIEIIERNIGIIKPNINLSDWS 760

Query: 828 FKV--GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           F +     +I      I G+G   A  I++A  +K F+   D    +    + + + + L
Sbjct: 761 FSLSADHQKIILGFNMINGLGNENANKIVQARNNKQFEGFIDCLINLAKNGITKSLFDKL 820

Query: 886 VFAGALDCFGY 896
           V  G  D F  
Sbjct: 821 VNVGVFDQFKL 831


>gi|227537930|ref|ZP_03967979.1| DNA polymerase III alpha subunit [Sphingobacterium spiritivorum ATCC
            33300]
 gi|227242232|gb|EEI92247.1| DNA polymerase III alpha subunit [Sphingobacterium spiritivorum ATCC
            33300]
          Length = 972

 Score =  549 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 240/1034 (23%), Positives = 447/1034 (43%), Gaps = 117/1034 (11%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L   + +S   G  S   +++   A     +A+T+ NN   + +F  K    GI+PI+G
Sbjct: 2    YLNCKTWFSYHYGTFSSKQLVEDAKALDIHTLALTNINNTADSWDFVLKCREQGIKPILG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
             ++  D                 V   +LL     G+ ++ E +S      +       +
Sbjct: 62   TEIRNDH----------------VFCYILLARNETGFFQINEFLSAYNQRKENFPAEPEL 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L  I   G   ++    G                 L+  +    +R  + LQ+   
Sbjct: 106  STEHLWIIYRYGQKSVSALREGE----------------LIGLRPQDLNR--LELQQELA 147

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPRVTP 250
             DR+                V  +   F     +  H +L A+A +T++S+         
Sbjct: 148  ADRF----------------VMLSPVTFQDRTYFNLHRLLRAIARNTLLSKLLPEDIAGS 191

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            D  L +  E+V  F+  P  +  T+++A  C   +++      ++     +D +    + 
Sbjct: 192  DEMLLSEVELVRQFARFPTVISRTIQVADSCHISMELKTDKNRKYFTTTEEDDR----HL 247

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A+ G  +R        G   ++  +R++ EL +I +  F+ YFLI+ D +++A + 
Sbjct: 248  LRKLAMEGCVMRY-------GTEHKEAFERVEKELKMIGKQGFNAYFLIIWDILRYAHER 300

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
                  GRGSGA S+ AY L ITD+DP++  L FERFLNPDR S PDFDIDF    RD +
Sbjct: 301  GF-YHVGRGSGANSIVAYCLRITDVDPIKLDLYFERFLNPDRSSPPDFDIDFSWKDRDAI 359

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
              Y+  +YG + V+ +  + + + +A +R++G+   +P +++D+L               
Sbjct: 360  FDYMFKRYGRQHVSLLGMYSTFKRRAIIRELGKVFGLPKAEIDQLVAQ------------ 407

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                    RE R  D     + +  Q LE    H S HA G++I ++P+     +    +
Sbjct: 408  --------REWRTEDKIQGWIHKYGQLLEHFPNHLSVHAGGVLISEKPICHYAAVELPPK 459

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP--FDDHE 607
             D      +M   E+ GL KFD L  + L  ++ +L  + +     +D+  +   F+D  
Sbjct: 460  -DFQTIHMDMFEAERVGLFKFDILSQRGLGHIKDALQLIEENTGKHIDIHQVERFFEDPL 518

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRK 665
                + +  T+G F +ES  MRQ L  +Q      ++A  S+ RPG   + ++  Y  R 
Sbjct: 519  LAEKIRSGDTIGCFYIESPAMRQLLGKLQCSDYLTLVAASSIIRPGVAQSGMMKQYIERY 578

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE- 724
            + ++K++ +HP +  +L ET GV++YQE V+++A   +G SL +AD+LRRAM  K + E 
Sbjct: 579  HDRDKVLYLHPKMKELLAETFGVMVYQEDVIKVAHHFAGISLDQADILRRAMSGKYRSEN 638

Query: 725  -MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
              +K ++ F     + G  + +   ++  +  F  Y F K H+A++AV SYQ+ ++KT+Y
Sbjct: 639  KFEKLRQTFFDNCRERGYEEQVTREVWRQMESFGGYSFAKGHSASFAVESYQSLFLKTYY 698

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P EF  A +        + + + Q+  +    +  P +N       + ++ +Y  L  ++
Sbjct: 699  PREFYVAVIN-NFGGFYRTEFYFQELFKTGAHVQLPCINHSQYYTNIVNDTVYVGLIHLQ 757

Query: 844  GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            G+    A +I+ E   +  +  L DF +R+         L  L+   AL   G ++  LL
Sbjct: 758  GLEEKFAHNIITERRKNGIYRDLNDFIARL---SPGMEQLNLLIRIDALRFTGKNKKALL 814

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
                     A ++   +     ++F      F      E+  +E+   +      ++GF 
Sbjct: 815  W-------EANFMTTRQQILEVSLFETPVLDF-QLPEFEEEPMEDYKDQL----ELMGFI 862

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                    +  +L    +         +   G  + +   +V+ ++  T +  R+ + TF
Sbjct: 863  VGD-----FFDLLDPKYLANTVNVGDLVHLLGKEVSMIGRLVTIKETWTIRKERMVFGTF 917

Query: 1021 SEPAKE-YEANFFP 1033
             +   +  +   FP
Sbjct: 918  LDCNADWLDTVHFP 931


>gi|332044349|gb|EGI80543.1| DNA polymerase III, alpha subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 985

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 256/1033 (24%), Positives = 444/1033 (42%), Gaps = 109/1033 (10%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L  H+ YSL  G  S  ++LD    +   +I ++D NN  + L F  +A    I+P++G
Sbjct: 2    YLNCHTYYSLRYGTFSELDLLDLAKENNYDSIVLSDINNTSACLNFIHQANLRNIKPVVG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                   +                   V +     G++ L + +S      Q  Q   + 
Sbjct: 62   IDFRNGAEQKF----------------VGIAKNNVGFKELNDFMS------QHSQHKMLI 99

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
                       +I              F       EK L   KK F    ++ +  +   
Sbjct: 100  PDLAPNFENVFII------------YPF-------EKVLQLNKKCFEPYEFIGVSIND-L 139

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRVTPD 251
             + R SQ+      H   LV         + D+ AH +L A+ ++ ++S+ ++    +  
Sbjct: 140  KKLRFSQL----KKHSQHLVFLQQVTIRDKGDFNAHRLLRAIDNNILLSKLEKTEECSIQ 195

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            H + +  E+   F + P  L+NT  I  +CS           + ++   D  + + +  L
Sbjct: 196  HKMLSSVELEKAFVEFPFILQNTKNILNQCSINFGFGNERKSQNLKVYTDSFENDFK-LL 254

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                   +  R           ++  ++RL  EL  I  M+F  +FLI  D I +AK   
Sbjct: 255  ERLCKEKISTRYV-------APSKKVKERLYKELETIKSMRFVSFFLINYDIISYAKSKG 307

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
                 GRGSGA S+ AY + ITD+DP+   L FERF+NP R S PDFDIDF    RD+V 
Sbjct: 308  Y-FHIGRGSGANSIVAYIIGITDVDPIELDLYFERFINPFRASPPDFDIDFSWKDRDDVT 366

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             Y+  ++     A + T+ + + +AA+R++G+   +P  ++D+LCK   N          
Sbjct: 367  AYIFKRFK--HTALLATYNTFKYRAAVREIGKVFGLPKEEIDKLCKNNFN---------- 414

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                         D     +++ ++ +EG   + S H+AGI+I D+P+          + 
Sbjct: 415  ---------YYKLDEFSKLVIKYAKLIEGFPNYISVHSAGILILDKPIHNYSATNLPPK- 464

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP-----FDDH 606
              P  QF+M   E  G+ KFD LG + L  ++ +L+ +++         I        D 
Sbjct: 465  GFPTLQFDMNIAEDVGIFKFDILGQRGLAKIKDALEIISENRPDSPPIDITNIEAFKKDP 524

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
            +  +LL + G +G + +ES  MR  ++ +Q     +++A  S+ RPG   + +   +  R
Sbjct: 525  KINNLLKSGGAIGAYYVESPAMRGLMQQLQTQNYIELVAASSIIRPGVSGSGMKEEFIKR 584

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK--IK 722
                EK    HP++  ++ ET GV++YQE V+++A   +G +L EADVLRR M  K   K
Sbjct: 585  HRYPEKRKEAHPILYKIMPETYGVMVYQEDVLKVANQFAGLTLGEADVLRRGMSGKYRSK 644

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            +E +  +E+F       G  + +  +++  +  FA Y F K H+A+YAV SYQ+ ++K +
Sbjct: 645  KEFEAVEEKFYKNCRNKGFDEKLITDVWNQIKSFAGYAFAKGHSASYAVESYQSLYLKCY 704

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP+EF+ A +          + +  +AR+   +I  P +N      K+    IY     +
Sbjct: 705  YPLEFMTAVLN-NGGGFYSAEHYFHEARKQGAKICAPCINKSDHPNKLIGKTIYLGFGYL 763

Query: 843  KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K +   T + I+     +  F SL++F  R+    +    L  L+   A    G S+++L
Sbjct: 764  KNLELFTIKRILSERQLNGDFTSLDNFIDRL---TITIEQLTILIRIDAFKFTGKSKVEL 820

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L          +   K   N    +F  E   F     L K +V +      +E  +LGF
Sbjct: 821  LW-----HSIFKLNAKRDYNSQSKLFISEHKKF----NLPKLNV-SWIENAYDEMELLGF 870

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                 PL  Y  ++ +    G     +    G N+ +   +V+ +   T KG  +   TF
Sbjct: 871  -----PLCDYFNLVNENTDNGILALKMKNYVGKNVLIYGSLVTTRYNNTSKGELMRLSTF 925

Query: 1021 SEPAKE-YEANFF 1032
             +     ++A  F
Sbjct: 926  IDKEGNYFDAVHF 938


>gi|71894540|ref|YP_278648.1| DNA polymerase III DnaE [Mycoplasma synoviae 53]
 gi|71851328|gb|AAZ43937.1| DNA polymerase III alpha subunit [Mycoplasma synoviae 53]
          Length = 990

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 280/971 (28%), Positives = 468/971 (48%), Gaps = 100/971 (10%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           ++L + + +S L  A+ LN + + I + +   +AITD  NL++     +       + II
Sbjct: 7   IYLHLKTEFSFLNSAIRLNKLFNLIESQKIEYLAITDKENLYALPYLLEFREKYKFKLII 66

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           GC+ ++D +                  +++L     GY+ + EL+ +    +        
Sbjct: 67  GCEFELDNK----------------LEVIILAKNLAGYKLINELIYQKSNNNSIN----- 105

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               L ++ +E + ++   ++G     +  N   +  +          +  Y +  +   
Sbjct: 106 ----LSDLNSENIFVIDSDTNG-----YLKNKKSLEVEL--------PNFFYNSKFQLEN 148

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            D    + V ++                + + +    ++L  +      +       +  
Sbjct: 149 KDNVVYAPVKKI----------------IDKFENFTLNILDKIREEFKENNNFDDFYS-- 190

Query: 252 HYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQKEEEN 309
                       F+DL E + +NT+ +A +C F L++   I LP F     ++I+ + + 
Sbjct: 191 ---------EEEFNDLDEKIYQNTLNLADQC-FELEIDKEIKLPEFSSNSKEEIESKIKA 240

Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             R K +               Y      +R+++EL++I    F  YFLI+AD + WA+K
Sbjct: 241 SERTKYL------------LLNYDKDLVIERINYELSIIKEQNFVDYFLIIADALSWARK 288

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
           N I +GPGRGS +GS+ AY L ITD++PL F LLFERFLN  R++ PD DID   DRR E
Sbjct: 289 NKISIGPGRGSVSGSLVAYVLEITDVNPLDFDLLFERFLNTKRVTYPDIDIDIQDDRRSE 348

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
           V+ Y+  KYG +R A I TF +L AK+A++DVGR L +  S+V+ + K I ND    ++L
Sbjct: 349 VLDYIFEKYGQKRCALITTFSTLGAKSAIKDVGRMLGISNSEVNLVTKTI-NDFDKNLTL 407

Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
           ++   + R  + +      + L E +  +EGLYR    HAAGIVI +  ++   P+   V
Sbjct: 408 ES-EYNKRNSKYKAIVSKYENLHEYATYIEGLYRQTGVHAAGIVIANNDITNYFPI-NKV 465

Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD---DH 606
                  Q +++ +EK GLIK DFLGLK LT+++   + +  +    ++     +   DH
Sbjct: 466 LDKYNQVQLSLENLEKYGLIKIDFLGLKNLTIVKNIENLINPKLHFDNVINQNLNKFIDH 525

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
           +T+ +L    T GIFQLES GM++A+  ++ D  EDI A++SLYRPGP   I +Y   K 
Sbjct: 526 KTFSILNDLKTEGIFQLESDGMKRAISQVKIDSFEDIYAIISLYRPGPSQYIPIYGKNKK 585

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              +I  +HP+ D ++  T G+I+YQEQ+MQIAQ ++G S SEAD+LRRA+ KK  +E+ 
Sbjct: 586 DPSQIEKVHPIYDKIVAPTFGIIVYQEQIMQIAQEVAGLSFSEADLLRRAISKKNSQELK 645

Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             K +F  G +KN +S  +   I+  + KFADYGFNKSHA AYAV++ + A+ K  YP  
Sbjct: 646 SYKTKFFEGGAKNNVSSDLLNRIYSNIEKFADYGFNKSHAVAYAVLALKLAFYKARYPFI 705

Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
           F    +     + E   K+ Q+A +  I+I    +N   ++    +N +Y S   IKG G
Sbjct: 706 FYKVLLDNSFSSQENTSKYVQEATKLKIKINAADINISSLNTVEENNNLYLSFLTIKGFG 765

Query: 847 TTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
             +A + I E +    F +  D   R+    + +  L  L+ A     FG +   L+ SL
Sbjct: 766 ENSATKLIQERNRAGKFKNFFDAAIRLGMIGIKKATLSLLINANIFRSFG-NINTLINSL 824

Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEK---------GTFSDKITLEKFSVE---NSSVRFE 953
           +++  +   + K        +   E+           F+ +        E   +     +
Sbjct: 825 EDVSNFVDLINKKVKKAFMTLDKSEQTDGKWISLYEDFAREEQFPNILDEVEISDKEIMD 884

Query: 954 NEQRVLGFYFS 964
            E +  G   S
Sbjct: 885 LETKAYGISLS 895


>gi|148377433|ref|YP_001256309.1| DNA polymerase III DnaE [Mycoplasma agalactiae PG2]
 gi|148291479|emb|CAL58864.1| DNA polymerase III, alpha subunit [Mycoplasma agalactiae PG2]
          Length = 977

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 281/1036 (27%), Positives = 476/1036 (45%), Gaps = 114/1036 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+ L   + YS LE  + + +++     + + A+ ++D NN+F+  EF ++  A  I+PI
Sbjct: 4    FIDLYNTTEYSFLESLIKVKDLVRLSKENGKRAVVLSDHNNMFALGEFLKQCAAYEIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            I                 G          +LL    EG++ +  L+ +    +       
Sbjct: 64   I-----------------GVDLDVEESRFILLAKNYEGFKLINSLILKKSREE------- 99

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                 L +I ++ L ++   S+G                            LY   + H+
Sbjct: 100  ---IKLSDIISDNLFIIDHPSNG----------------------------LYAKNEHHK 128

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D   ++  +    +     +    +  +  ED E  ++L+ + ++    + +      
Sbjct: 129  LSD--NKNYYISSPDSSIPNSIYVKENKLIDVEDNETLNILLKLGNNK---EANYNFSYF 183

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            + Y           SD    L     I   C+         L  F          E E +
Sbjct: 184  EDY--TTD------SDF---LARINFIVDNCNVTFPKKELKLASFC---------ESEEK 223

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                 +  ++  LA+   A   +      R+++E +VI ++ F  YFLI++D I++A  N
Sbjct: 224  NYELFIEKIKQGLAKHKKALLPYKTAVNDRINYECSVIKKLVFINYFLIISDMIEYADNN 283

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I +GPGRGS AGS+ +Y L IT I+PL+++LLFERFLN D++S PD DID   DRRDE+
Sbjct: 284  GISIGPGRGSAAGSLISYLLGITKINPLKYNLLFERFLNIDKVSWPDIDIDIQDDRRDEI 343

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
              Y+QNKYG  +VA I TF ++  K A+RDVGR L +P S V+R+ K I     +    +
Sbjct: 344  FAYLQNKYGKSKVAVISTFQTMGTKQAIRDVGRMLDIPLSDVNRISKSINAFANYSSIEE 403

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
              A +  F +   +    ++ +    KL+GL R    HAAG++I D+ L++ VP++ +  
Sbjct: 404  EFAKNLTFNKEVSSLKDYEKFINHVSKLQGLPRQYGIHAAGLIISDKDLNEYVPVFENAY 463

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL---SLIPFDDHE 607
            S L V Q  M+++E  GL+K D LGLKTLT ++     +++  +  +L   + +   D  
Sbjct: 464  SFLQV-QVPMEFVEDFGLLKIDLLGLKTLTEIKHIEKRISKLKLFDELVYENDLELQDPM 522

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
              +LL    T G+FQ+ESSGM+  ++ +     ED+ A++SLYRPGP + I  Y N +  
Sbjct: 523  AINLLNNGNTEGLFQIESSGMKSTIKKVGIQSFEDLFAIISLYRPGPKEYIKDYANNRKN 582

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             + I  I P+ D ++  T G+IIYQEQ+M+IAQ ++  S ++AD+LRRA+ KK + E+ K
Sbjct: 583  PKLIEKIDPVYDEIVAPTYGIIIYQEQIMEIAQAVAKMSFAQADLLRRAISKKNEAELHK 642

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +  F  G  +N  S      I++ + KFA YGFNKSHA +YA ++ + A+ K  YP  +
Sbjct: 643  YRNTFFEGGLRNNFSIESLTKIYDKIEKFAQYGFNKSHAVSYAYLTMKMAYYKARYPQVY 702

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             +A ++    +  KI  F  + +  N  +  PS+        V +  IY     IKG+G 
Sbjct: 703  FSALISNSYGDQNKIASFVNELKNMNFSVYSPSIIHFTNSAIVDNGDIYLPFNMIKGLGA 762

Query: 848  TTARHI-MEASADKPFD--SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
             + + I ++   +  +   SL +   R+    +   ++ +L+ A     FGY     +  
Sbjct: 763  ESIKKIALDIKENGQYKDLSLFEILLRLRFAGIKNSMISTLIRANVFRSFGY--QDYIGG 820

Query: 905  LDNIQKYAQWVEKNRTNKHENIFA------HEKGTFSDKITLEKFSVENSSVRFENEQRV 958
            +D +       E N  +K  N FA        +G       +E  S  N      NE  +
Sbjct: 821  VDLLM----QEEYNLLSKGANSFADIANNLDFEGYKKASENIEMQSKFNLEEESRNEIEL 876

Query: 959  LG-FYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            LG  Y      + YK     K       + +  ++G+      +++ K++ K +      
Sbjct: 877  LGNIY------NAYKTVQYEKKYKYRLSDLL-KMQGSFSTAIEIII-KKEPKDK---PYA 925

Query: 1017 WVTFSEPAKEYEANFF 1032
             +   +    Y   FF
Sbjct: 926  IIEVCDRTLNY--TFF 939


>gi|330752736|emb|CBL88199.1| DNA polymerase III subunit alpha [uncultured Leeuwenhoekiella sp.]
          Length = 1013

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 250/1038 (24%), Positives = 455/1038 (43%), Gaps = 117/1038 (11%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H+ +SL  G LS   +LD   A+ Q +IA+TD NN  + L+F  KA    I+P+IG 
Sbjct: 3    LNCHTYFSLRYGTLSEEELLDLALANNQSSIALTDINNTSACLKFISKARDKNIKPVIGV 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR-MYLLDQGKQSVRIC 132
                 +Q                   ++L     G+  + + +S+ ++          + 
Sbjct: 63   DFRNGIQ----------------QCYIMLAKNNSGFLAINDFLSKFLHDKTAFPDDAPVL 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
             + +                               EK L   K  F +  Y+ +   +  
Sbjct: 107  ENVITIYSF--------------------------EKALELDKNNFEENEYIGIGI-KDL 139

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPD 251
            ++ R S+       +E  LV      F +++DY  H +L A+  + ++S+     +  P+
Sbjct: 140  NKLRFSRY----SNYEKKLVLLQPVSFRNKKDYNIHRLLRAIDTNQLLSKLPKEEQADPE 195

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
              + +   ++S F + P  L+N++EI   C+          P+ + K+    ++ +  +L
Sbjct: 196  EKMLSPDLLISAFKEYPFILKNSIEILNGCTIHFDFSKSRKPQNL-KKVFSSEELDFQKL 254

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                  GL+ R               ++RL  EL++I    +  +FLI    I++A+  N
Sbjct: 255  NELCKEGLKKRY-------TIITPQIKERLQKELSLIKSQDYVSFFLINWKIIEYARSKN 307

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
                 GRGSGA S+ AY L ITD+DP+   L FERF+N  R S PDFDIDF    R+++ 
Sbjct: 308  YFY-VGRGSGANSIVAYLLGITDVDPIELDLYFERFMNEFRSSPPDFDIDFSTWDREDIT 366

Query: 432  RYVQNKYGHER-VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK--LIPNDPAHPVS 488
             ++ N++G    VA + ++ + Q   A+R++G+   +P  ++D+L K   I N       
Sbjct: 367  SFIFNEFGKNNQVALLGSYVTFQHSGAVRELGKVFGLPKYEIDKLSKGSFIGNKL----- 421

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                            D     +L+ S  L+G   + S HAAGI+I ++ +      +  
Sbjct: 422  ----------------DDIAKLILKYSSYLDGKPNYLSIHAAGILISEKSIHYFSATHLP 465

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL-----SLIPF 603
             + + P  QF+M   E  GL KFD LG + L  ++ SL+ + +    + L     +   F
Sbjct: 466  PK-NFPTVQFDMHIAEDVGLYKFDILGQRGLGKIKDSLEIIKKNQPHIKLPDIHETKQFF 524

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
             D     +++    +G F +ES  MR  L+ ++ +    ++A  S+ RPG   + ++  Y
Sbjct: 525  HDPLINKMISEADCVGCFYVESPAMRMLLKKLRVNDYITLVAASSIIRPGVAKSGMMREY 584

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK- 720
              R   K++    HP++  ++ +T G+++YQE V+++A   +   L EADVLRR M  K 
Sbjct: 585  IIRHRDKKRCEDAHPILLQIMPDTYGIMVYQEDVIKVAHHYAKLDLGEADVLRRGMSGKY 644

Query: 721  -IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
              ++E    K +FI+   +NG    +   ++  +  FA Y F K H+A+YAV SYQ+ ++
Sbjct: 645  RSRQEFQDVKNKFINNCIQNGEKIEVVNEVWRQIESFAGYAFAKGHSASYAVESYQSLYL 704

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K ++P+E++ A++          + +  +AR+    I  P +N   ++  + +  IY   
Sbjct: 705  KCYFPLEYMVATIN-NGGGFYTTETYIHEARKKGATIEAPCINRSNIETTINNKTIYLGF 763

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
              ++ +  TT   I+       + SL DF  R++   +    L+ L+   AL  FG  + 
Sbjct: 764  QHLENLEKTTMVKIINERICGNYKSLTDFTERIN---IQIEQLDILIRIDALRIFGKDKR 820

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV---ENSSVRFENEQ 956
             LL     I+  A   E         IF       + +  L +F +   EN+  +   E 
Sbjct: 821  TLLWEAYYIENTAPKYEH-----QHRIF----NISTQEFKLPQFEITQLENAFDQL--EL 869

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
                 Y   +P  + +    K   +   E + +     I + A +V+ ++  T    ++ 
Sbjct: 870  LTYSLY---NPFILLEE---KPNQQYLSEHLKSHLNKIISIYAYLVTVKRTSTSNKKQMY 923

Query: 1017 WVTFSEPAKE-YEANFFP 1033
            + TF + +    +   FP
Sbjct: 924  FGTFLDKSGNWVDTVHFP 941


>gi|255531275|ref|YP_003091647.1| DNA polymerase III subunit alpha [Pedobacter heparinus DSM 2366]
 gi|255344259|gb|ACU03585.1| DNA polymerase III, alpha subunit [Pedobacter heparinus DSM 2366]
          Length = 979

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 255/1029 (24%), Positives = 435/1029 (42%), Gaps = 109/1029 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L VHSSYSL  G +S+  ++ +  +     +AITD NN    +EF ++  A G++PI   
Sbjct: 3    LNVHSSYSLRYGTMSVEQLVKEAVSLGIEQMAITDINNSTGVMEFMRECRAHGVRPI--- 59

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                     ++   Q K  +      + +    EG + L + ++            +  L
Sbjct: 60   -------GGIEFRKQNKLLY------IGIARNKEGMKELNDFLT-------FHNFSKKEL 99

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                +      ++    S   +    F                       +NL   R   
Sbjct: 100  PARADAFKNACVIYPYQSGIAVGTDDFIGIRPGQ----------------LNLLYGRDLS 143

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDH 252
            + ++             LV        +   Y  H+ L A+  +T++++ D      PD 
Sbjct: 144  QLKD------------KLVVWQPVTVYNRLHYRLHEYLRAIDLNTLLTKVDEGNKCRPDE 191

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +     E+  +++  P  LENT ++   C+           +  +      + E++  L 
Sbjct: 192  HFLPPGELKHLYAAYPFILENTEKLMAGCTLNYVNKERRNKKTYKGS----KAEDKLLLE 247

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
              A AGLE R             +  +RL  EL VI  + F  YFLI  D I++ K    
Sbjct: 248  QLAWAGLEQRY-------KGENHEAAERLKKELEVIEELDFFAYFLITWDIIRYGKSKGY 300

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                GRGSGA S+ AY L ITD+DP+   L FERFLN +R S PDFDID+  D R+++ +
Sbjct: 301  -YHVGRGSGANSIVAYCLFITDVDPIELDLYFERFLNKNRSSPPDFDIDYSWDEREDIQQ 359

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            Y+ N YG +  A + T  S + ++  R++G+ + +P +++D                   
Sbjct: 360  YIFNTYGEKHTAMLGTMSSFKDRSVFREIGKVMGLPKAEIDDF----------------- 402

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
              D   +E    +P   +++     +E +    S HA GI+I + P++    +    +  
Sbjct: 403  -LDPVKQEEHKKNPVYKKIMAAHGMMEKMPNQRSIHAGGILISEDPITYYTALDLPPKDF 461

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP--FDDHETY 609
              V Q++M   E  GL KFD L  + +  +++++  + Q     VD+        D    
Sbjct: 462  ATV-QWDMYEAEAIGLDKFDILSQRGIGHIKEAVQLIRQNTGDVVDIHDTRSLLKDPRLN 520

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNG 667
             LL    ++G F +ES  MRQ L  +  +    ++A  S+ RPG   + ++  Y    + 
Sbjct: 521  GLLKEGSSIGCFYIESPAMRQLLVKLACEDYLTLVAASSIIRPGVAQSGMMATYIYNYHH 580

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK--IKEEM 725
             E++  +HP+++  LK+T GV++YQE V++I     G  L++AD+LRR M  K   K+E 
Sbjct: 581  PEEVKYLHPIMEEHLKDTYGVMVYQEDVIKICYHYGGLDLADADILRRGMSGKYRSKKEF 640

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+  E F   A K G  + +   I+  +A FA Y F+K+H+A+YAV SYQ+ ++KT+YP 
Sbjct: 641  DRLIESFFIHAKKEGRDEEVTKEIWRQVASFAGYSFSKAHSASYAVESYQSLFLKTYYPK 700

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+ A +        +   +  + R+    +  P VN       +  +  Y  L  I+G+
Sbjct: 701  EFMVAVLN-NYGGFYQRWVYVHELRKVGAVVHLPCVNHSEDVVSINGSDAYLGLIGIQGL 759

Query: 846  GTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
             +     I  E  A+  +  LEDF  R     +       L+  GAL   G S+  LL  
Sbjct: 760  ESRHMTLIPKERRANGLYKGLEDFVRRT---GITLEQAILLIRIGALRFTGSSKKALLWE 816

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +     Y+    K      + +F  E         L      +      NE  +LG+  S
Sbjct: 817  V-----YSYLGNKQPEVPSQELFRMESK----ACVLPPLDS-DKLEDAYNELELLGYPVS 866

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
                D+ K   R  G        A I G  I++  + V ++   T+   ++ + TF +  
Sbjct: 867  MGMFDMLKTDYR--GDVKASGLRAYI-GQTIKMVGLYVCEKTVHTKNNKKMWFGTFLDAE 923

Query: 1025 KE-YEANFF 1032
               ++   F
Sbjct: 924  GNFFDTTHF 932


>gi|313674487|ref|YP_004052483.1| DNA polymerase iii, alpha subunit [Marivirga tractuosa DSM 4126]
 gi|312941185|gb|ADR20375.1| DNA polymerase III, alpha subunit [Marivirga tractuosa DSM 4126]
          Length = 1041

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 245/1035 (23%), Positives = 441/1035 (42%), Gaps = 115/1035 (11%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L  HS YSL  G LS+  ++++   +   ++A+TD N+     EF+ K   AGI+P+ G
Sbjct: 2    YLNCHSFYSLRYGTLSVEALVNQAVLNGVESLALTDINSTTGVTEFASKCVEAGIKPLAG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                             +         V +     G++ + EL+++  L +       + 
Sbjct: 62   V----------------EIRKNDTLLYVAIAQDLAGFREINELLTKTNLSE-------MP 98

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  LQ      + ++    + P                     ++     Y+ +      
Sbjct: 99   LP-LQSPHFNHVCVIYPTHNVP---------------------QILQKHEYIGI------ 130

Query: 193  DRYRESQVVQLAYTHEL-PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTP 250
             R  E +  + A+ H+   LV      F +++++  H +L  +  + ++S  K+  +   
Sbjct: 131  -RPAELKRYKPAFAHKADKLVCLYPVTFSTKQEFNLHKLLRCIDENILLSHLKENQQAAK 189

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              ++    E+  ++ D P  + NT  +  +CSF     +P   +           E++  
Sbjct: 190  GEFMIPIKELKLLYKDYPHIIRNTELLFDQCSFAFDFKSPKNKKCYTSS----YYEDKIL 245

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L   A+ G + R +    A        +QRL  EL +I +M+F  YFL   D I+ +   
Sbjct: 246  LETLALEGFKDRFSANNKAA-------KQRLYDELEIIHKMQFGCYFLTTWDIIRHSLSK 298

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
                  GRGSGA S+ AY L IT++DPL  +L F RFLN  R S PDFDID+    RD++
Sbjct: 299  GY-FHVGRGSGANSLVAYCLKITEVDPLELNLYFARFLNNKRTSPPDFDIDWSWTDRDDI 357

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I Y+  ++G E      T    + ++ +R++G+   +P  ++D+L +  P+         
Sbjct: 358  IDYIFKRFGREHTGFCGTVTDFKHRSTVRELGKVFGLPKEELDQLSRTSPDHLP------ 411

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                         +D  V  +    + L G     S H+ GI I + P++    M     
Sbjct: 412  -------------SDNLVKNIQHYGKMLSGFPNQLSMHSCGIYITEEPIANYTAM-NIYP 457

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP--FDDHE 607
              +P  + +M   E   L K D L  + L  ++++++ + + +G+ +D++       D +
Sbjct: 458  KGVPTCEIDMYMAEAFHLEKIDILSQRGLGHIKEAVEIVKENKGIDIDIADTKSFKKDEK 517

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRK 665
               LL T  TLG F +ES  MR  L  ++ +  E ++A  S+ RPG   + ++  Y  R 
Sbjct: 518  CNELLRTGKTLGCFYIESPAMRGLLRRLKCNSYETLVAASSIIRPGVAQSGMMREYVERH 577

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-- 723
                +I   HP+ +  LK+T GV++YQE V++IA   +   L++ADVLRR M  K +   
Sbjct: 578  RDPSRIKYFHPVFEEQLKDTYGVMVYQEDVIKIAHHFAKLDLNDADVLRRGMSGKSRSQR 637

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMDK K +F S  +  G  K +   ++  +A FA Y F KSH+A+YAV SYQ+ ++K +Y
Sbjct: 638  EMDKVKNQFFSNCAALGYPKEMVEEVYRQIASFAGYSFCKSHSASYAVESYQSLFLKAYY 697

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P+EF+ A +        + + +  +AR     I  P VN    +  + +  I+  L  + 
Sbjct: 698  PLEFITAVINNN-GGFYRPEVYINEARMLGAHIEAPDVNYSYANASLKETTIHLGLDQVM 756

Query: 844  GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             +       I+        F SL D   R D    N   +   ++ GAL     S+ QL 
Sbjct: 757  HLSKRGIESIVNTREKTGTFSSLSDLLDRTDL---NFDDVSYAIYTGALRSISRSKGQL- 812

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
                     A+    +   K E++   +         +++  +   +     E   LG+ 
Sbjct: 813  ------IIEAKQFFSHEPAKTEDLQLFDLKPKEISYEIDEGDMFEDAFD---EMEGLGYP 863

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ--QKKTRKGS-RIGWVT 1019
             S  P ++ K      G     E         +++   ++S +      + G  ++ + T
Sbjct: 864  VSVSPFNLLKT--NYRGSVFASELYQNKD-KTVKMLGYLISIKDVPIVNKDGKTKMNFGT 920

Query: 1020 FSEPAKE-YEANFFP 1033
            + +     ++   FP
Sbjct: 921  WIDVYGGYFDTVHFP 935


>gi|302533607|ref|ZP_07285949.1| bacterial DNA polymerase III alpha subunit [Streptomyces sp. C]
 gi|302442502|gb|EFL14318.1| bacterial DNA polymerase III alpha subunit [Streptomyces sp. C]
          Length = 800

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 236/826 (28%), Positives = 371/826 (44%), Gaps = 61/826 (7%)

Query: 199 QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
           + V  A    +  V TN   +         DVL A      +      R + + +LK+ +
Sbjct: 1   RTVGFAAEQGVTAVLTNAVRYADPGQGPVADVLDAARRLVPLG-PRSSRDSGERWLKDPA 59

Query: 259 EMVSIFSDLPEA-----------LENTVEIARRCSFILQVHAPILP-RFIEKECDDIQKE 306
            M  +   + EA           L  T E A  CS   +    I    F E         
Sbjct: 60  AMTEVAERIAEAAGLRAADARRLLARTRETAEACSVDPEDDLGIGSVHFPEARLVGAA-- 117

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                R  A   L  R A G + +GY   + Y  R++ EL+VIA   ++ YFL VA  + 
Sbjct: 118 -----RRTAQRVLASRAAAGMVLRGYAGRRAYWDRMEEELDVIAHHGYASYFLTVAQVVD 172

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
             ++  I V   RGSGAGS+  + L I   DP+   LL ERFL+  R  +PD DID    
Sbjct: 173 DVRQMGIRVA-ARGSGAGSLVNHLLGIAHADPVERGLLMERFLSKRRRVLPDIDIDVESA 231

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR EV R +  ++G ERVA +    + + + A+RDVG AL M  + VDRL K  P+  A 
Sbjct: 232 RRLEVYRRIIGRFGAERVATVAMPETYRVRHAVRDVGAALSMDPAAVDRLAKAFPHIRAR 291

Query: 486 PVSLQAIADDSRFREARL----ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                A+A+    RE R          +RL ++ + L+ L R  + H  G+++ D  L  
Sbjct: 292 DARA-ALAELPELREVREGREGRAEEHERLWDLVEALDALPRGTAMHPCGVLLSDASLLA 350

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----RGVKVD 597
             P+        P++QF+   +E  GL+K D LG++  + +  ++  L +         D
Sbjct: 351 RTPVVPTSGEGFPMSQFDKDDVEDLGLLKLDVLGVRMQSAMAHAVTELKRATGLDLDLDD 410

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            + +P  D  TY L+ +  TLG FQ+ES G R  +  +QPD   D++  +SL+RPGP+  
Sbjct: 411 PAQVPPGDGPTYELIRSAETLGCFQIESPGQRDLVGRLQPDSFHDLVVDISLFRPGPVAA 470

Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
           D +  +   ++G+  +   HP +   L+ET GV+++ EQ+++I  +++G    EAD +RR
Sbjct: 471 DMVRPFIEARHGRAPVRFPHPDLADALRETYGVVVFHEQIIEIVHVMTGCGRDEADRVRR 530

Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            +     +   + K  F + A+  G +  +    +E++  F  YGF K+HA A+AV +YQ
Sbjct: 531 GLS--DPDSQGRIKAWFAATAAGRGYAPEVVARTWEIVEAFGSYGFCKAHAVAFAVPTYQ 588

Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----- 830
           +AW+K H+P  F A  +T +     K +    DAR+  + ++P  VN       +     
Sbjct: 589 SAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRGVPVLPLDVNRSAAAHHIELVSD 647

Query: 831 -------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                      +  +L+ + G+    AR I    A +P+ SL DF  R       R V E
Sbjct: 648 GQEGRGPERWGLRLALSDVHGISKKEARRI---EAGQPYASLRDFWDRAH---PGRPVAE 701

Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            L   GALD FG +R  LL  L  +   AQ     R      +     G  +  + L   
Sbjct: 702 RLAQVGALDAFGANRRDLLLHLTELH-GAQRAVGTRGAAQLPLGG---GRSTAPVGLPDL 757

Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
           +    + R   E  VLG   S H ++ +   L  +G+        T
Sbjct: 758 T---DAERLSAELGVLGMGASRHLMNDHHAFLAGLGVTPAARLRDT 800


>gi|194100685|ref|YP_002003434.1| gp76 [Mycobacterium phage Predator]
 gi|192758401|gb|ACF05173.1| gp76 [Mycobacterium phage Predator]
          Length = 1104

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 245/1021 (23%), Positives = 433/1021 (42%), Gaps = 106/1021 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV    HS++S  +G  S+   + ++AA    A+A+++  N+ S ++  ++   AGI+PI
Sbjct: 3    FVSFHTHSTFSYGDGFGSVEAHVQRVAALGMSAVALSEHGNVSSHVQLERECNKAGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +         K T        +   + +     EGY+ L  LV++ +L     Q   
Sbjct: 63   FGIEAYFGPVSEEKRT-------QSKTHLTIFAMDEEGYRNLNRLVTQSWLD--FYQYPT 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN---------------SSQVAEKRLLTFK 175
            +    L++  + GL + +G +                            +   + L  F 
Sbjct: 114  VSWENLRK-HSAGLAVFSGCADSLASCTLLGGKFLGPRRDPELDSSKRQKAVHRVLARFT 172

Query: 176  KLFGDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +F DR ++  QR  G  R R   ++  ++A    +PL+AT +  +           L A
Sbjct: 173  DVFEDRFFLETQRFPGLPRTRAINAEFARIARDTGIPLIATADVHYPFPHQNIMQTALHA 232

Query: 234  VAHSTVVSQKDRPRVTPD--HYLKNRSEMVSIF-------SDLPEALENTVEIARRCSFI 284
                  V+  D          Y ++  E++           +  +A+ NT E+A+RC+  
Sbjct: 233  AHRGGSVATVDAEWEYDILLTYPESDEEIIKDLVGTGLSEDEAKQAVANTAELAKRCNVE 292

Query: 285  LQVHAPILPRFI---------EKECDDIQKEEEN------ELRNKAVAGLEVRLAQGAIA 329
            L    PI    +          K   +  KEE         + N+   G + R  Q    
Sbjct: 293  LPKAKPIRFPGVKIDKAMLCGPKAPSEGDKEEVRKFATQLYMMNEIKKGWKYRCKQRP-E 351

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                A++Y +R+ +E++VI+   F  YFL+ +D + + K     VGP RGS AGS+  Y 
Sbjct: 352  IAKRAKEYSRRISYEMSVISEKDFMDYFLVNSDLVSYTKDQGKGVGPARGSAAGSLVCYL 411

Query: 390  LTITDIDPLR---FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            L IT+IDPL      ++FERF++  R  MPD D+DF  + R  +++   + YG + VA +
Sbjct: 412  LRITEIDPLYPVFNKMIFERFIDKTREDMPDIDLDFDPEARPVIVQRAVDLYGQDHVANV 471

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
                  +  +A+  + +A  +P +    +   I +       +     D    E+   +P
Sbjct: 472  GNHMGYRGVSAMNAMAKAHALPQNTFKAIKDRIQDRTETDERVDDTILD--VLESYGDNP 529

Query: 507  SVDRLLE-------ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY-RDVRSDL----- 553
             V +++E       ++  LEG  R    HAAG VIG  P+     +Y R+  S       
Sbjct: 530  DVAKVVEAHPNPVKLATWLEGNKRGLGVHAAGFVIGSEPIPDTCAIYSRESGSGRKRKTV 589

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD-------H 606
             V  ++ +  E  GL+K DFLGL T+ +++++ + +      +   L P  D        
Sbjct: 590  TVIPYDKRDAEYLGLLKNDFLGLLTIGVIRRAAEMVGMTMEDMYTLLPPEGDLRDYDHSR 649

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
                       +GIFQ E    R  L  + P     +  + +L RPGP        Y   
Sbjct: 650  PVIEGFLNDDLVGIFQFEGGTTRGVLRDVVPTEFRHLADINALSRPGPKYGGQTERYIAV 709

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K G+E++ SIHPL D  ++ T G I+YQEQ+M I + L+G+ + +   +R+ +GKK+ E 
Sbjct: 710  KAGEEELESIHPLFDQHVEWTYGQIVYQEQIMFILRDLAGFPIEKVLKVRKIIGKKLGEH 769

Query: 725  M-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
                  E F +G + NG+ +  A  ++  +   A Y FN SH+ +Y+ I++Q+ W+K HY
Sbjct: 770  QFAALWEDFKNGCATNGVDENTARRVWGGITSAAGYAFNTSHSYSYSWIAWQSMWLKVHY 829

Query: 784  PVEFLAASMTLEMDNV-EKIKK--FCQDARQFNIQIMPPSVNTPCVDFKVGD-------N 833
            P  F A+S++   D   +K ++    QDA    I+++P   +    ++ +          
Sbjct: 830  PAAFFASSLSFNGDGKEDKPRRTALIQDAIAHEIKVLPIDPSRSGENWDIERQMPGVDAG 889

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS------ADKPF--DSLEDFCSRVDSKKLNRRVLESL 885
             I      I  VG  TA  I+          +K +     +D   R         V + +
Sbjct: 890  AIRPGFIQIPKVGEATASDIVAWRDDLDQQHNKAYGLIKWDDL--RAVKGVGPSTVAKMM 947

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            +FA + D F  +R       D +  + + +E    +    + + E+   SD++  +    
Sbjct: 948  MFAESPDPFEINR-----VHDQLAAFRKQMESGAFDN-SPLPSIEEFYMSDELPDDDHCA 1001

Query: 946  E 946
             
Sbjct: 1002 W 1002


>gi|291037375|ref|ZP_06568339.1| DNA polymerase III, alpha subunit [Gluconacetobacter xylinus NBRC
           3288]
          Length = 977

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 189/699 (27%), Positives = 306/699 (43%), Gaps = 47/699 (6%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S  +  LQV + +S L GA S   + ++  A    A+ I D N+L   ++    A   GI
Sbjct: 2   SMPYAELQVTTYFSFLRGASSPIELFEQAKALGIEALGICDRNSLAGMVQAHVAAKETGI 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           + ++GC                +        +++  +    Y RL  L++       GK 
Sbjct: 62  RLVVGC----------------RLDLADFAPVLVYPTDRAAYGRLCRLLTLGKAR-AGKG 104

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              +    L   G   L++L   ++           +     +L   K  F DR Y+ L 
Sbjct: 105 QCHLLWEDLVAWGDGLLVILLPDTA-----------NDACALQLRKLKDAFADRAYMALT 153

Query: 188 -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R R  D+ R  ++  LA+   +P VATN+ LF + +     DV+  + + T + +    
Sbjct: 154 LRRRPNDQMRLYELANLAHQARVPAVATNDVLFHTHDRRILQDVVTCIRNHTTIDEAGFA 213

Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           R    D YLK  +EM  +FS  PEA+  T++I  RC F L   A   P     E     +
Sbjct: 214 RERHADRYLKPPAEMARLFSRYPEAVARTMDIVERCRFSLDDLAYQYP----DEVSVPGQ 269

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             +  L      G      +G         + R+ LD EL +I RM ++ YFL V   ++
Sbjct: 270 TPQQALEALTWKGAAAAYPEGI------PPEVRKTLDHELALIGRMDYAPYFLTVHSIVR 323

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+  +I +  GRGS A S   Y L IT IDP R SLLFERF++ +R   PD D+DF   
Sbjct: 324 YARSQDI-LCQGRGSAANSAVCYVLGITAIDPARTSLLFERFVSEERREPPDIDVDFEHA 382

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+++I+++   YG    A        +AK ALRDVG+ + +P   +  L   I      
Sbjct: 383 RREQIIQWIYGHYGRNHAALTAVVTRYRAKGALRDVGKVMGLPEDLIRTLSGQIWGW-GR 441

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            +   A+ +        ++D  +   L++++ L G+ RH S H  G V+    L +LVP+
Sbjct: 442 KLDEGALDETG----IDMSDRRIRLTLDLARCLIGVPRHLSQHPGGFVLTHDRLDELVPI 497

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                    + +++   I+    +K D L L  LT ++K LD LA+    +  L  IP +
Sbjct: 498 EPAAMDARQIIEWDKDDIDVLKFMKVDVLALGMLTCMKKGLDLLAEHKGQRYTLQTIPAE 557

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI      + R
Sbjct: 558 DPRTYAMIRKADTIGVFQIESRAQMSMLPRLRPRVFYDLVIEVAIVRPGPIQMGWTASMR 617

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
                     H      +K T   +   + V Q+    +
Sbjct: 618 HQCAMMRSEDHSEETARMKVTIIGLDIAKSVFQVHGTDA 656


>gi|313835830|gb|EFS73544.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL037PA2]
 gi|314970780|gb|EFT14878.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL037PA3]
          Length = 739

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 188/720 (26%), Positives = 310/720 (43%), Gaps = 83/720 (11%)

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+   I +  GRGS A S   YAL IT +DP+ + L FERFL+  R   PD D+DF 
Sbjct: 1    MEFARSRGI-LCQGRGSAAASAVCYALGITVVDPVFYGLPFERFLSVLREEEPDIDVDFD 59

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D   + +    
Sbjct: 60   ARRREEVIQYVYTKYGRRNAAQVADVITYRQRSAIRDMAKALGYSQGQQDAWSRQMEKRL 119

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              P             +        D +  ++Q++ GL RH   H+AG+V+   P+ ++ 
Sbjct: 120  VSPSP-----------QDSDGPEIPDDVTGLAQQVVGLPRHLGIHSAGMVLTREPVGRIC 168

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+         V Q++ +     GL+KFD LGL  L+ L  S D +++       L+ IP
Sbjct: 169  PIEPARMRGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSFSFDLISRHCGRSWALASIP 228

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VV 660
             ++   Y +L    ++G+FQ+ES      L  ++P C  D+   + L RPGP+       
Sbjct: 229  RNEPGVYDMLCRGDSIGVFQVESRAQIGTLPRLKPRCFYDLAVEIGLIRPGPVQGGAVHP 288

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   ++++AD+LRRAM  K
Sbjct: 289  YIRRRTGAELVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTVADADLLRRAMGSK 348

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            +  E +D  + +   G + +GI    A +I+  +  FA++GF +SHA ++A + Y +AW+
Sbjct: 349  RGMERIDSLRTKLFEGMAAHGIDDDTAQDIYARIESFANFGFAESHALSFAGLVYTSAWL 408

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-------- 831
            K HYP  FLAA +  +            DAR+  +    P V    V   +         
Sbjct: 409  KLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADLELLDSCHEG 468

Query: 832  --------------------------------------DNRIYYSLAAIKGVGTTTARHI 853
                                                     +   L+ + G+ T TA  I
Sbjct: 469  LGGEGLETGMDDCLHDHDESEIGAFDPNHDDGDHRRDTHFAVRLGLSDVSGISTETATRI 528

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            +E      F SL+D   RVD        +E+L  AGA D    SR   L  +  I   A 
Sbjct: 529  VEERERGFFTSLDDLARRVDLSS---EEVEALALAGAFDDLVGSRRGALWQIGQINGVAP 585

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
                 +      +                           ++ R  G     HP+   + 
Sbjct: 586  GQLDVQVATQPPLL----------------PELTQMELLGDDLRATGISTDDHPIRHMRD 629

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             L + G+   ++      G  I +A +V  +Q+  T  G  + ++   +          P
Sbjct: 630  ALNRRGVVRVDQLDGVESGRRIEVAGVVTHRQRPGTAGG--VTFLNLEDETGLLNVLVAP 687


>gi|314927242|gb|EFS91073.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL044PA1]
 gi|328905983|gb|EGG25758.1| error-prone DNA polymerase [Propionibacterium sp. P08]
          Length = 739

 Score =  536 bits (1380), Expect = e-149,   Method: Composition-based stats.
 Identities = 188/720 (26%), Positives = 310/720 (43%), Gaps = 83/720 (11%)

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+   I +  GRGS A S   YAL IT +DP+ + L FERFL+  R   PD D+DF 
Sbjct: 1    MEFARSRGI-LCQGRGSAAASAVCYALGITVVDPVFYGLPFERFLSVLREEEPDIDVDFD 59

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D   + +    
Sbjct: 60   ARRREEVIQYVYTKYGRRNAAQVADVITYRQRSAIRDMAKALGYSQGQQDAWSRQMEKRL 119

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              P             +        D +  ++Q++ GL RH   H+AG+V+   P+ ++ 
Sbjct: 120  VSPSP-----------QDSDGPEIPDDVTGLAQQVVGLPRHLGIHSAGMVLTREPVGRIC 168

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+         V Q++ +     GL+KFD LGL  L+ L  S D +++       L+ IP
Sbjct: 169  PIEPARMRGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSFSFDLISRHCGRSWALASIP 228

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VV 660
             ++   Y +L    ++G+FQ+ES      L  ++P C  D+   + L RPGP+       
Sbjct: 229  RNEPGVYDMLCRGDSIGVFQVESRAQIGTLPRLKPRCFYDLAVEIGLIRPGPVQGGAVHP 288

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   ++++AD+LRRAM  K
Sbjct: 289  YIRRRTGAELVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTVADADLLRRAMGSK 348

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            +  E +D  + +   G + +GI    A +I+  +  FA++GF +SHA ++A + Y +AW+
Sbjct: 349  RGMERIDSLRTKLFEGMAAHGIDDDTAQDIYARIESFANFGFAESHALSFAGLVYTSAWL 408

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-------- 831
            K HYP  FLAA +  +            DAR+  +    P V    V   +         
Sbjct: 409  KLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADLELLDSCHEG 468

Query: 832  --------------------------------------DNRIYYSLAAIKGVGTTTARHI 853
                                                     +   L+ + G+ T TA  I
Sbjct: 469  LGGEGLETGMDDCLHDHDESEIGAFDPNHDDGDHRRDTHFAVRLGLSDVSGISTETATRI 528

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            +E      F SL+D   RVD        +E+L  AGA D    SR   L  +  I   A 
Sbjct: 529  VEERERGFFTSLDDLARRVDLSS---EEVEALALAGAFDDLVGSRRGALWQIGQINGVAP 585

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
                 +      +                           ++ R  G     HP+   + 
Sbjct: 586  GQLDVQVATQPPLL----------------PELTQMELLGDDLRATGISTDDHPIRHMRD 629

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             L + G+   ++      G  I +A +V  +Q+  T  G  + ++   +          P
Sbjct: 630  ALNRRGVVRVDQLDGVESGRRIEVAGVVTHRQRPGTAGG--VTFLNLEDETGLLNVLVAP 687


>gi|313678740|ref|YP_004056480.1| DNA polymerase III subunit alpha [Mycoplasma bovis PG45]
 gi|312950242|gb|ADR24837.1| DNA polymerase III, alpha subunit [Mycoplasma bovis PG45]
          Length = 977

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 273/1032 (26%), Positives = 473/1032 (45%), Gaps = 106/1032 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+ L   + YS LE  + + +++     + + A+ ++D NNLF+  EF ++     I+PI
Sbjct: 4    FIDLYNTTEYSFLESLIKVKDLVRLSKENGKKAVVLSDHNNLFALGEFLKQCNIYDIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            I                 G          +LL    +G++ +  L+ +    +       
Sbjct: 64   I-----------------GIDLDVEDSRFILLAKNYDGFKLINSLILKKSSQE------- 99

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                 + +I  + + ++   S+G                            LY   + H+
Sbjct: 100  ---ITIDDIVNDNIFIIDHPSNG----------------------------LYAKNEHHK 128

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D   ++  +    +     +    +  +  ED E  ++++ + +S    + +      
Sbjct: 129  LSD--NKNYYISSPDSSLPNSIYIKENRLIDIEDNETLNIVLKLGNSK---EANYNFNYF 183

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            D Y              P  L     I   C+ I       L  F +          + E
Sbjct: 184  DDY--TTD---------PVFLNRINFIVDNCNVIFPKKELKLASFCK---------TDEE 223

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                 ++ ++  L +   A   +      R+++E +VI  + F  YFLI++D I++A  N
Sbjct: 224  NYELFISKIKQGLLKHKKALSPYKTVINDRINYECSVIKELGFVNYFLIISDMIEYADAN 283

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I +GPGRGS +GS+ ++ L IT I+PL+++LLFERFLN D++S PD DID   DRRDE+
Sbjct: 284  DISIGPGRGSASGSLISFLLGITKINPLKYNLLFERFLNVDKVSWPDIDIDIQDDRRDEI 343

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
              Y+Q+KYGH RVA I TF ++  K A+RDVGR L +P + ++R+ K I     +    +
Sbjct: 344  FTYLQSKYGHNRVAVISTFQTMGVKQAIRDVGRMLDIPLADINRISKSINAFANYSSIEE 403

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
              A +  F +        ++ +    KL+GL R    HAAG++I D+ LS+ VP++ +  
Sbjct: 404  EFAKNLVFNKEVSLIKEYEKFVNHVSKLQGLPRQYGIHAAGLIISDKDLSEYVPVFENAN 463

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL---SLIPFDDHE 607
            S L V Q  M+++E  GL+K D LGLKTLT ++     +++  +  +L   + +   D  
Sbjct: 464  SFLQV-QVPMEFVEDFGLLKIDLLGLKTLTEIKHIEKRISKNKLFDELVYENDLELQDPM 522

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
              +LL    T G+FQ+ESSGM+  ++ +     ED+ A++SLYRPGP + I  Y N +  
Sbjct: 523  AINLLNNGNTEGLFQIESSGMKNTIKKVGIQNFEDLFAIISLYRPGPKEYIKDYANNRRD 582

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
               I  I P  D ++  T G+IIYQEQ+M+IAQ ++  S ++AD+LRRA+ KK + E+ K
Sbjct: 583  PSLIEKIDPTYDEIVAPTHGIIIYQEQIMEIAQAVAKMSFAQADLLRRAISKKNEVELHK 642

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +  F  G  KN  S      I++ + KFA YGFNKSHA +YA ++ + A+ K  YP  +
Sbjct: 643  YRNTFFKGGLKNNFSLDSLEKIYDKIEKFAQYGFNKSHAVSYAYLTMKMAYYKARYPQVY 702

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             ++ ++    +  KI  F  + +  N  +  P++        V +  IY     IKG+GT
Sbjct: 703  FSSLISNSYGDQTKIASFVNELKNMNFSVYSPNITHFTNSAIVDNGDIYLPFNMIKGLGT 762

Query: 848  TTARHI-MEASADKPFD--SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
             + R I ++   +  +   S+ +   R+    L   ++ +L+ A     FG+     +  
Sbjct: 763  ESIRKIALDIKENGEYKDLSIFEILLRLRFAGLKNSIISTLIRANVFRDFGF--QYYISG 820

Query: 905  LDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVL-GF 961
            +D + +    +     N  + I      +G       +E  S+ N      NE  +L G 
Sbjct: 821  VDLLMQEEYNLLSKGANSFKEILHNLDFEGYKQASENIEMQSMFNLEEESRNEIELLGGV 880

Query: 962  YFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y      + YK     K       + +  + GN   +A  +V K++ + +       +  
Sbjct: 881  Y------NAYKTVQYEKKYKYKLADLL-KMHGNY-NVAIEIVVKKELRDK---PYVILEV 929

Query: 1021 SEPAKEYEANFF 1032
             + +  Y   FF
Sbjct: 930  CDRSLNY--TFF 939


>gi|134098900|ref|YP_001104561.1| DNA polymerase III alpha subunit (fragment) [Saccharopolyspora
            erythraea NRRL 2338]
 gi|291009107|ref|ZP_06567080.1| DNA polymerase III alpha subunit (fragment) [Saccharopolyspora
            erythraea NRRL 2338]
 gi|133911523|emb|CAM01636.1| DNA polymerase III alpha subunit (fragment) [Saccharopolyspora
            erythraea NRRL 2338]
          Length = 631

 Score =  532 bits (1371), Expect = e-148,   Method: Composition-based stats.
 Identities = 184/567 (32%), Positives = 292/567 (51%), Gaps = 21/567 (3%)

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             K IP       + +  ++ +  R     D  + ++ + ++  EGL R+A  HA   +I 
Sbjct: 24   AKDIPLSGIVDPAHERYSEAAEVRSLIENDSQIGKIFDTARGREGLIRNAGVHACAHIIS 83

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594
              PL  ++P+++    +  +T ++    E  GL+K D LGL  +T +  ++  +    G 
Sbjct: 84   REPLLDVLPLWKRDDGE-IITGWDGPQCEAVGLLKIDILGLVNMTTIDDTVRMVKTNHGD 142

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +++   IP DD  TY +L    +LG+FQLE  GM+  L+ M P    DI+A V+LYRPGP
Sbjct: 143  EIEPLDIPLDDPATYEMLGRGESLGVFQLEGGGMQSLLKRMAPTRFGDIVACVALYRPGP 202

Query: 655  ID--NIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            +D    + Y +RKNGK+ +  IHP +D     +L ET G+I+YQEQ+M IAQ ++GY+L 
Sbjct: 203  MDVNAHLDYADRKNGKKPVGPIHPELDEPLKDILGETYGLIVYQEQIMAIAQKVAGYTLG 262

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            +AD+LRRAMGKK KE MD+Q  RF +G ++ G SK     ++  +  FA Y FNKSHAAA
Sbjct: 263  QADLLRRAMGKKKKEVMDEQFARFEAGMAERGYSKEAIDQLWATVLPFAGYAFNKSHAAA 322

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y +++Y TA++K HYP E++AA +T    N +K   +  + R+  I+++ P VN      
Sbjct: 323  YGLVTYWTAYLKAHYPAEYMAALLTANAHNKDKTGVYLSECRRMRIRVLQPDVNESVTQH 382

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               + RI + L AI+ VG+     I++   D   + S  DF  +V+    N+RVLESL+ 
Sbjct: 383  TAVEGRIRFGLGAIRNVGSNVVESIVKTREDKGRYASFTDFLDKVEILACNKRVLESLIK 442

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKF-- 943
            AGA D   ++RM L Q  +        ++++      ++F     T +  D   L     
Sbjct: 443  AGAFDSLEHTRMALTQHHEAAVDAVIGLKRHEAMGQFDLFGGGDDTAASNDASPLAHLQF 502

Query: 944  --SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------GNNI 995
                         E+ +LG Y S HPLD  + +L         E V   R       +  
Sbjct: 503  TDEEWPRKQLLAYEREMLGLYVSAHPLDGAERLLAPYQDTSIAELVGGEREPGGNGKDEA 562

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            ++A M+   Q++  + G     VT  +
Sbjct: 563  KIAGMISGVQRRLNKNGQPWAIVTLED 589


>gi|317472886|ref|ZP_07932192.1| DNA polymerase III alpha subunit protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899606|gb|EFV21614.1| DNA polymerase III alpha subunit protein [Anaerostipes sp. 3_2_56FAA]
          Length = 661

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 195/540 (36%), Positives = 303/540 (56%), Gaps = 21/540 (3%)

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
            +S++LEGL RHAS HAAG+VIG   + + VP+ +    D   TQF M  IE+ GL+K DF
Sbjct: 1    MSRRLEGLPRHASMHAAGVVIGKDSIDEFVPLAKGA-DDAVTTQFTMTTIEELGLLKMDF 59

Query: 574  LGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL+TLT++Q ++  + +R     D++ I  +D + Y +++   T G+FQLES GM+  +
Sbjct: 60   LGLRTLTVIQDAVHLIEKREGKPFDINKIDTEDPKVYEMISQGRTEGVFQLESGGMKTFM 119

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            + ++P+ +E+IIA +SLYRPGP+D I  Y   K  K+ I    P ++ +LK T G I+YQ
Sbjct: 120  KELKPESLEEIIAGISLYRPGPMDFIPRYVKGKVDKDSIRYDCPQLEKILKPTYGCIVYQ 179

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKT 744
            EQVMQI   L+GY+L  +D++RRAM KK  + M ++++ F+         G  KNGI + 
Sbjct: 180  EQVMQIVMELAGYTLGRSDLVRRAMSKKKGDVMVRERKNFVYGNEKEGIPGCIKNGIDEK 239

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
             A +I++ +  FA Y FNKSHAAAYAV++YQTA+++ HY  EF+AA +T  + N  K+ +
Sbjct: 240  TANHIWDEMLDFAKYAFNKSHAAAYAVVAYQTAFLRCHYQKEFMAALLTSVLGNTNKVSE 299

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FD 863
            +    R+  I+I+PP +N     F V D  I Y L+AIK +G      I+   ++   + 
Sbjct: 300  YIYACRKMGIKILPPDINKGEGAFSVDDGCIRYGLSAIKSLGKPVIEEILRERSEGGSYK 359

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            SL D   R+ SK++N+R +ESL+ +GALD  GY+R Q +    +I +  Q   K+  +  
Sbjct: 360  SLRDLIERLSSKEMNKRTVESLIKSGALDELGYTRKQQMFVYASILESIQKERKHEISGQ 419

Query: 924  ENI--FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
             +I  F  E    + +I        +   R   E+ VLG Y SGHPL+    IL ++   
Sbjct: 420  MSILDFMSEDQQKNFEIEYPDVGEFDKEQRLAMEKEVLGIYVSGHPLEDDVEILERLTTA 479

Query: 982  GYEESVATIR-GNNI-------RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +  A    G  +        +  ++   + K TR    + ++T  +     E   FP
Sbjct: 480  STADFTAEEDTGQPVLRDKQTCIIGGIISDMKVKLTRTNQNMAFLTLEDLMGTVEVIVFP 539


>gi|311747904|ref|ZP_07721689.1| putative DNA polymerase III alpha subunit [Algoriphagus sp. PR1]
 gi|126575898|gb|EAZ80208.1| putative DNA polymerase III alpha subunit [Algoriphagus sp. PR1]
          Length = 985

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 248/1038 (23%), Positives = 432/1038 (41%), Gaps = 113/1038 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV    HS +S   G LS++ ++++  + +  A A+TD N       F + A   GI P+
Sbjct: 2    FV--NCHSHFSFKYGTLSVDALIEEAKSKRLDAFALTDINCTAGVFPFIRAAQRVGIHPV 59

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG       Q                   + L    EG+  L   +S  +L+ +     R
Sbjct: 60   IGIDFRNGNQ----------------QQYIGLARNQEGFFELNSHLSD-HLVHKKPFGKR 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                   +     +I        P+    F                   +  Y+ +    
Sbjct: 103  AP-----DFDHCFIIY-------PLPDRPF----------------TLRENEYIGVHPT- 133

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVT 249
                     +    +  +  LV      F S+ D+ AH +L ++  +T++S+     +  
Sbjct: 134  ----QLNHLISSPWFRFKERLVMLQPVTFTSKIDFNAHRLLRSIDLNTLLSKLPTEEQGD 189

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P     + ++ V+   +    L N  ++   C F     A    R    +      E+ +
Sbjct: 190  PADRFYSYADAVARCENHSYLLANAQKLLEHCQFSFYFQAVKNKR----DVLGSDWEDYD 245

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR +   G   R                QR++ EL +I +  F+ YFLI  D + +A++
Sbjct: 246  FLRQETFKGALNRYPDLTAT-------ISQRIEKELELIQQKAFTSYFLINYDIVTFAQQ 298

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             N     GRGSGA S+ AY L ITD+DP+   L FERF+N  R + PDFDIDF    RDE
Sbjct: 299  RNF-YHVGRGSGANSIVAYCLGITDVDPIELDLYFERFINLYRENPPDFDIDFSWKDRDE 357

Query: 430  VIRYVQNKY---GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            V  Y+  KY     E V+ +  + + Q  +  R++G+   +P S ++             
Sbjct: 358  VTDYIFRKYNQGKQEHVSLLAAYSTFQYNSVFRELGKVFGLPKSDIE------------- 404

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             SL   AD   F      D     +++ SQ L  +  H + HA GI+I  +P+       
Sbjct: 405  -SLIHFADKPNF----EPDQFGKLIIKYSQVLHDMPSHLTVHACGILISHKPIHYYTATE 459

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF-- 603
               +   P++  +M   E  GL KFD L  + L  ++ +++ + Q   VKVD+  +    
Sbjct: 460  MPPK-GFPLSHIDMHVAEDIGLHKFDILSQRGLGHIKSAIEIIYQNQGVKVDIRKVEQFK 518

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
             D      L    T+G F +ES  MR  L  M+ D   +++A  S+ RPG   + ++  Y
Sbjct: 519  KDQRIKEHLRDGHTIGAFYVESPAMRMLLAKMKADEYLELVAASSIIRPGVARSGMMREY 578

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK- 720
              R   +E+    HP++  ++ ET G+++YQE V+++A   +G SL EADVLRR M  K 
Sbjct: 579  ILRHVDEERRKIAHPVLADIMPETYGIMVYQEDVIKVAHYFAGLSLGEADVLRRGMSGKS 638

Query: 721  -IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
              K+E  + K+RF +   + G    IA  ++  +  FA Y F K H+A++AV SYQ+ ++
Sbjct: 639  RSKDEFQRVKDRFFNNCREKGHDDKIAGEVWHQIESFAGYSFAKGHSASFAVESYQSLYL 698

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K ++P+EF+   +          + +  + R     I  P +N      ++    +Y   
Sbjct: 699  KAYFPLEFMVGVIN-NFGGFYHTEFYIHELRMNGADIQAPHINESEYLTRITGITVYLGF 757

Query: 840  AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
              +K +   +   I+ E   +  F  L DFC RV+   ++   L  L+        G ++
Sbjct: 758  IHLKYLEKASVEKILTERRKNGHFIGLADFCGRVE---ISLEQLLILIRINCFRFTGKTK 814

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             +LL     I       ++       ++F    G    +  + +    +      ++  +
Sbjct: 815  QELLWEAHFILN-----KRKAIPGPTDLFKQNTGFNFRQPAVPQLEEIDIRQEIVDQIDI 869

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGY--EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            L F     PLD    +++   I G    E  + + G  +++   +V+ +  +T KG+ + 
Sbjct: 870  LEF-----PLDSPFHLIKDQSICGIKAAELKSYL-GKTVQIVGYLVTVKYTRTVKGNVMN 923

Query: 1017 WVTFSEPAKE-YEANFFP 1033
            + TF +      +   FP
Sbjct: 924  FGTFIDREGHWIDTVHFP 941


>gi|86134487|ref|ZP_01053069.1| DNA polymerase III alpha subunit [Polaribacter sp. MED152]
 gi|85821350|gb|EAQ42497.1| DNA polymerase III alpha subunit [Polaribacter sp. MED152]
          Length = 1007

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 252/1041 (24%), Positives = 437/1041 (41%), Gaps = 102/1041 (9%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L  H+ YSL  G  S   +L     +    IA+TD NN  + + F Q+A    I+P+IG
Sbjct: 2    YLNCHTYYSLRFGTFSETELLQLAVKNNINCIALTDINNTSACMNFVQQARKTTIKPVIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE-LVSRMYLLDQGKQSVRI 131
                                       V +    +G+Q++   L S +          + 
Sbjct: 62   VDFRN----------------GNSQQFVAIAKNNKGFQQINAYLSSFLESKTNFPNKPKY 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                                                EK L      F    +V +     
Sbjct: 106  LADVFIVYPF--------------------------EKALELNLTSFKKNEFVGVSV-AE 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTP 250
             ++ R S +      ++  +V        +++D+ AH +L A+  + ++S+         
Sbjct: 139  INKLRFSYLNN----YKDKIVIQQQVTVRNKKDFNAHRLLRAIDKNILLSKLPKTEECLE 194

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               +    ++ + F D    ++NT  +  +C+     +     + +E   +    E+   
Sbjct: 195  TDIMFAYQDLKNHFKDFENVIQNTENLLNQCTINFGFNENRTNQNLEVYTNSFD-EDCQL 253

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L+      L+ R A          +    RL+ EL VI  +KF  +FLI  D I +AK+N
Sbjct: 254  LKKLCAENLKKRYAN-------PTEKVYNRLEKELKVIIDLKFVSFFLINYDIISFAKRN 306

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            N     GRGSGA S+ AY + ITD+DP+   L FERF+NP R S PDFDIDF    RD V
Sbjct: 307  NF-FHVGRGSGANSIVAYIIGITDVDPIELDLYFERFINPFRASPPDFDIDFSWKDRDIV 365

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
              Y+ N++    VA + T+ + + +A +R++G+   +P  ++D+L K +     +  S +
Sbjct: 366  TNYIFNRFK--NVALLATYVTFKYRAVVRELGKVFGLPKEEIDKLSKGVSTLGNYSRSQK 423

Query: 491  AIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +   +   +  D     +L+  + +EG   + S H+AGI+I D+P+         
Sbjct: 424  LANTTNNLNKENKSQFDSMAHLVLKYGKLIEGFPNYVSVHSAGILILDKPIHYFSATSLP 483

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV---DLSLIPF-- 603
             + + P  QF+M   +  G+ KFD LG + L  ++ +L  + +        D++ I    
Sbjct: 484  PK-NFPTVQFDMNIADDVGIFKFDILGQRGLAKIKDALILIKENNPNDPEIDITDIERFK 542

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661
            +D+   +LL T G +G + +ES  MR  ++ +Q +    ++A  S+ RPG   + +   +
Sbjct: 543  NDNNINNLLKTGGAIGAYYVESPAMRGLMQKLQTEDYLGLVAASSIIRPGVSSSGMKDEF 602

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R    E   + +P++  ++ ET GV++YQE VM++A   +  +L EADVLRR M  K 
Sbjct: 603  IKRHRYPEHRKNANPILLKIMPETYGVMVYQEDVMKVANQFADLTLGEADVLRRGMSGKY 662

Query: 722  K--EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            +   E    + +FI    K G    +   ++  +  FA Y F K H+A+YAV SYQ+ ++
Sbjct: 663  RSVSEFKAVENKFIENCRKKGFKDELIFEVWNQIKSFAGYAFAKGHSASYAVESYQSLFL 722

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K +YP+EF+ A +          + +  +A+     I  P +NT      V    IY   
Sbjct: 723  KCYYPIEFMTAVLN-NGGGFYSTEHYIHEAKMRGATIELPCINTSDHPNIVKGKTIYLGF 781

Query: 840  AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
              +K +       I+     +  F+SL+DF  RV    ++   L  L+   A       +
Sbjct: 782  GYLKNLEHLLIERILSNRQTEGLFNSLDDFLDRV---SISIEQLTILIRINAFRFTKKPK 838

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              LL             +KN       +FA +   F     LE   +E+   +      +
Sbjct: 839  TTLLW---EATFRINGTKKNELLSQVKLFAVQHQKFKI-PKLENHWLEDVYDQL----EL 890

Query: 959  LGF----YFSGHPL--DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            L F    YFS   L  + Y   ++   +  Y +        N+ L   +V+ +  KT KG
Sbjct: 891  LDFTTYNYFS---LVVEAYHKHIKAKEMHKYAD-------KNVLLYGKLVTTRYNKTSKG 940

Query: 1013 SRIGWVTFSEPAKE-YEANFF 1032
              +   TF +     ++A  F
Sbjct: 941  KLMRLSTFIDADGNYFDAVHF 961


>gi|319954732|ref|YP_004165999.1| DNA polymerase iii, alpha subunit [Cellulophaga algicola DSM 14237]
 gi|319423392|gb|ADV50501.1| DNA polymerase III, alpha subunit [Cellulophaga algicola DSM 14237]
          Length = 995

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 247/1034 (23%), Positives = 441/1034 (42%), Gaps = 111/1034 (10%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L  HS YSL  G  S   +L    A+    +A+TD NN  + + F +K+   GI+PIIG
Sbjct: 2    YLNCHSYYSLRFGTFSEIELLKMGQANHIATLALTDINNTSACMNFVRKSKEYGIKPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                   +                   V +    EG++ L   +S             I 
Sbjct: 62   IDFRNGAE----------------QLYVGIAKNNEGFRELNAFLS-------FHSHKNIK 98

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  +  +     I+                     E  L   K  F    Y+ +      
Sbjct: 99   LPPIAPVFEHAYIIYP------------------FENVLQLEKINFEAHEYIGISV---- 136

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--QKDRPRVTP 250
                         ++   LV      F ++ D+ AH +L A+A++T++S  Q+       
Sbjct: 137  -ENLRRLPFSKYKSYTDKLVIQQPVTFRNKRDFNAHRLLRAIANNTLLSKLQQTEEGRLS 195

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            +  L ++ +++  F D P+ + NT  +  +C+      A  + +  ++     ++E+ N 
Sbjct: 196  EQML-SKEKLLEAFQDFPQLVTNTKTLMAQCNVGFGFGASRVSQN-QQVFGTSKEEDFNY 253

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L+     GL  R                +RL  EL  I +M F  YFLI  D +++A   
Sbjct: 254  LQQLCEDGLPKRYPT-------RTDAVSKRLAVELETIKKMDFVSYFLINHDIVKYANSK 306

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +  GRGSGA S+ AY + ITD+DP+   L FERF+NP R+S PDFDIDF    R++V
Sbjct: 307  GY-LHVGRGSGANSIVAYIIGITDVDPIELDLYFERFINPYRVSPPDFDIDFSWKDREDV 365

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
              Y+  ++     A + T+ + + +A +R++G+   +P  ++D+LCK             
Sbjct: 366  TAYIFRRFK--NTALLATYNTFKYRAVVRELGKVFGLPKEEIDKLCK------------- 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F E  L D     +L+ S  ++    + S H+AGI+I D+P+          +
Sbjct: 411  -----GHFSENNL-DDMGKLVLKYSALIKDFPNYLSVHSAGILILDQPIHYYSATDLPPK 464

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD----D 605
                V QF+M   E AG+ KFD LG + L  ++++++ +   R    ++ +   +    D
Sbjct: 465  GFATV-QFDMIIAEDAGIFKFDILGQRGLAKIKEAIEIIKVNRPEVPEIDITQIETFKND 523

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
                +LL+    +G + +ES  MR  +  ++ +    ++A  S+ RPG   + +   Y  
Sbjct: 524  ANINNLLSRGKAIGAYYVESPAMRGLMCKLKVNDYLGLVAASSVIRPGVSSSGMKNEYIR 583

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK--I 721
            R    E+    + ++  ++ ET G+++YQE V+++A   +G  L EADVLRR M  K   
Sbjct: 584  RHREPERRKEANAILAQIMPETYGIMVYQEDVLKVANQFAGLDLGEADVLRRGMSGKFRS 643

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            + E  + +E+F S     G    +   +++ +A FA Y F K H+A+YAV SYQ+ ++K 
Sbjct: 644  RAEFTRVEEKFRSNCKAKGYPDALTTEVWDQIASFAGYAFAKGHSASYAVESYQSMYLKC 703

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YP+EF+ A +          + +  +AR +  QI  P +N       +    IY     
Sbjct: 704  YYPLEFMVAVLN-NGGGFYSTEHYIHEARMWGAQIHAPCINLSDHHNTIKGVAIYLGFGY 762

Query: 842  IKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +K +     +  + E      F SL+DF  RV    ++   L  L+  GA    G  + +
Sbjct: 763  LKNLENLVVQRFLTERQLYGAFKSLDDFIDRV---IISIEQLAILIRIGAFKFTGLEKNE 819

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L      I K     ++   + + ++F  +   F     L K +       ++    +LG
Sbjct: 820  LHWQ--GIFKINALKKR---SGNPSLFKPKHKQFE----LPKLAHSWVEEAYDQ-IELLG 869

Query: 961  FYFSGHPLDVYKPILRKMGIKGY-EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            F     PL  Y  ++ +  +     + +       + L  ++V+ +   T+    +   T
Sbjct: 870  F-----PLYSYFDLISEEILSDAKAQDMQHHHNKELLLYGILVNTRFNTTKNNKNMRLST 924

Query: 1020 FSEPAKE-YEANFF 1032
            F +   + ++   F
Sbjct: 925  FVDQEGDYFDVVHF 938


>gi|302561461|ref|ZP_07313803.1| DNA polymerase III, alpha subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302479079|gb|EFL42172.1| DNA polymerase III, alpha subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 775

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 215/771 (27%), Positives = 347/771 (45%), Gaps = 55/771 (7%)

Query: 249 TPDHYLKNRSEMVSIFSDLPEA-----------LENTVEIARRCSFILQVHAPILP-RFI 296
           + + +LK +  M      + EA           LE T   A  C    +    +    F 
Sbjct: 3   SGEAWLKEQGAMREAAERIVEAAGFRREAAARLLEQTQATAAECLVDPEDDLGMGSVHFP 62

Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNVIARMKFSG 355
           E              R  A   L  R A G +  GY   ++Y +R+  EL++IA   F+ 
Sbjct: 63  EPHLVGAG-------RRTAQRALASRAAAGMVLHGYAGRREYWERMHRELDIIAHHGFAS 115

Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
           YFL V+  +   +   I V   RGSGAGS+  + L I   DP+   LL ERFL+ +R+ +
Sbjct: 116 YFLTVSQVVDDVRHMGIRVA-ARGSGAGSLVNHLLGIAHADPVEHGLLMERFLSKERVVL 174

Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
           PD DID    RR EV R +  ++G ERVA +    + + + A+RDVG AL M   ++DR+
Sbjct: 175 PDIDIDVESARRLEVYRAIIGRFGAERVAAVAMPETYRVRHAVRDVGAALSMDPDEIDRI 234

Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K  P+  A      A+ +    R          RL E+ + L+ L R  + H  G+++ 
Sbjct: 235 AKSFPHIRARDARA-ALEELPELRRLAGEKEKYGRLWELVEALDALPRGIAMHPCGVLLS 293

Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
           D  L    P+        P+ QF+   +E  GL+K D LG++  + +  ++  + +  G 
Sbjct: 294 DASLLTRTPVMPTSGEGFPMAQFDKDDVEDLGLLKLDVLGVRMQSAMAHAVTEVERATGE 353

Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
           ++DL  +P  D  TY L+ +  TLG FQ+ES G R  +  +QP    D++  +SL+RPGP
Sbjct: 354 RIDLDAVPEGDPATYGLIRSTETLGCFQIESPGQRDLVGRLQPSTFHDLVVDISLFRPGP 413

Query: 655 I--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           +  D +  +   ++G+  +   HP ++  LK T GV+++ EQV+ I  +++G    EAD 
Sbjct: 414 VAADMVRPFIEARHGRAPVRYPHPDLEESLKGTYGVVVFHEQVIDIVSVMTGCGRGEADR 473

Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           +RR +     E   + K  F   A+  G         +E++  F  YGF K+HA A+AV 
Sbjct: 474 VRRGLS--DPESQGRIKVWFAQHAAARGYDAETIQRTWEIVEAFGSYGFCKAHAVAFAVP 531

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-- 830
           +YQ+AW+K H+P  F A  +T +     K +    DAR+  + ++P  VN   V  ++  
Sbjct: 532 TYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRGVPVLPLDVNKSGVAHRIEL 590

Query: 831 --------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                       +  +L+ + G+    A  I      +P+ SL DF  R    + +R + 
Sbjct: 591 VSESKESKEVWGLRLALSDVHGISEAEAARIA---GGQPYASLLDFWERA---RPSRPLA 644

Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
             L   GALD FG +R  +   L  + + A+           +      G  +    L  
Sbjct: 645 GRLAQVGALDAFGANRRDMQLHLTELHRGAR-------GGRGDQLPLSGGRRTAPAGLPD 697

Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
            +      R   E  VL    S H +D +   L  + + G   + A   G 
Sbjct: 698 LTPP---ERLSAELGVLSMDASHHLMDDHATFLEDL-LCGLRAAAARDPGT 744


>gi|206600063|ref|YP_002242137.1| gp80 [Mycobacterium phage Konstantine]
 gi|206287151|gb|ACI12496.1| gp80 [Mycobacterium phage Konstantine]
          Length = 1098

 Score =  526 bits (1354), Expect = e-146,   Method: Composition-based stats.
 Identities = 242/1021 (23%), Positives = 420/1021 (41%), Gaps = 112/1021 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV    HS++S  +G  S+   + ++++    A+A+++  N+ S ++  ++   AGI+PI
Sbjct: 3   FVSFHTHSTFSYGDGFGSVEAHVQRVSSLGMSALALSEHGNVSSHVQLERECKKAGIKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +         K              + +     EGY  L +LV++ Y+         
Sbjct: 63  FGIEAYFAPVSEAKR-------GQLKTHLTIFAMDEEGYHNLNKLVTKSYIDS--YYKPT 113

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN---------------SSQVAEKRLLTFK 175
           +    L +    GL +L+G +   +                            + +  F 
Sbjct: 114 VSWENLVK-HNAGLAVLSGCADSLLSCTLLGGKFLGPRRDHRNEKSRRPMAGRRLVQRFA 172

Query: 176 KLFGDRLYVNLQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +FGDR ++  QR  G  R      ++  ++    +PL+AT +  +           L A
Sbjct: 173 DVFGDRFFLETQRFPGLGRTCAVNEELAAISRDTGIPLIATADVHYPYPHQNVMQTALHA 232

Query: 234 VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE----------ALENTVEIARRCSF 283
                  + +D      D  L        I  DL            A+  T ++A+RC+ 
Sbjct: 233 AHRGGTAATQDADW-EYDILLTYPESDKEIIDDLVATGISETEARSAVRATAQLAQRCTV 291

Query: 284 ILQVHAPILPRFIEKECDDIQKE------EENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
            L    P+  RF   +   +  E          + +K   G + R  Q    K   A++Y
Sbjct: 292 ELPKAKPL--RFPGVDLTAVHTESGRIAVTRKFMWDKLREGWKYRCKQRPELK-TRAKEY 348

Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             RL +E+  I    F  YFLI +D + + K     VGP RGS AGS+  Y L IT+IDP
Sbjct: 349 NDRLKYEMETIVSKDFMDYFLINSDLVSYTKDQGKGVGPARGSAAGSLVCYLLRITEIDP 408

Query: 398 LRF---SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           L      ++FERF++  R  MPD D+DF  + R  +++   + YG E VA +      + 
Sbjct: 409 LYPVFDKMIFERFIDKTREDMPDIDLDFDPEARPVIVKRAISLYGPENVANVGNHQGYRG 468

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF--REARLADPSVDRLL 512
            +AL  + +A  +P S    + K I +            DD+     E+   +P V +++
Sbjct: 469 VSALNAMAKAHALPRS----VFKPIKDRIQDRTETDDRRDDTILDVLESYGENPEVAKVI 524

Query: 513 E-----------------ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY-RDVRSDL- 553
           E                 ++  LEG       HAAG VI   P+ +   +Y R+  S   
Sbjct: 525 EQHYWWTKDRKQVPGPLQLATWLEGDCSGLGVHAAGFVISSEPIPETCAIYSRESGSGRN 584

Query: 554 ----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD---- 605
                V  ++ +  E   L+K DFLGL T+ +++++ + +      +   L P  D    
Sbjct: 585 RKQVTVIPYDKRDAEYLNLLKNDFLGLLTVGVIRRAAEMVGMTMEDMYTLLPPEGDLRDN 644

Query: 606 ---HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVV 660
                          +GIFQ E    R  L  ++P     +  + +L RPGP        
Sbjct: 645 RESRPIIERFMNDDLVGIFQFEGGTTRSVLRDVKPTEFRHLADINALSRPGPKYGGQTDR 704

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
           Y   K G E++  IHPL D  +  T G I+YQEQ+M I + L+G+ + +   +R+ +GKK
Sbjct: 705 YIAVKMGDEELEKIHPLFDQHVDWTYGQIVYQEQIMFILRDLAGFPIEKVLKVRKIIGKK 764

Query: 721 IKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           + E       E F +G + NG+ + +A+ ++  +   A Y FN SH+ +Y+ I++Q+ W+
Sbjct: 765 LGEHQFAALWEDFKNGCAANGVGEDVALRVWAGITSAAGYAFNTSHSYSYSWIAWQSMWL 824

Query: 780 KTHYPVEFLAASMTLEMDNV-EKIKK--FCQDARQFN--IQIMPPSVNTPCVDFKVGDNR 834
           K H+P  F AAS+    D   +K ++    +D ++    I ++P   N    ++ V    
Sbjct: 825 KHHHPAAFFAASLEFNGDGKDDKPRRTALIKDTKEHGRDIAVLPLDPNASKTNWSVESGA 884

Query: 835 IYYSLAAIKGVGTTTARHIMEAS------ADKPFD--SLEDFCSRVDSKKLNRRVLESLV 886
           I      I  +G  TA  IM          DK +   + ED  +    K + +  +E + 
Sbjct: 885 IRPGFVQIPKIGEATAADIMAWRDDLNQQHDKAYRLLTWEDLIA---VKGIGKATVEKMR 941

Query: 887 -FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            FA   D F  +R+Q      +     +    N   ++  +   ++   SD++  +    
Sbjct: 942 EFAEKADPFEVNRVQ------DQLGAFRKQMVNGEFENSPLPGVDEFYMSDELPDDDHIA 995

Query: 946 E 946
            
Sbjct: 996 W 996


>gi|2996335|gb|AAC13215.1| DNA polymerase III alpha subunit homolog [Yersinia pestis KIM 10]
          Length = 1135

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 263/940 (27%), Positives = 424/940 (45%), Gaps = 114/940 (12%)

Query: 50  NNLFSALEFSQKACAAGIQPIIGCQ----LDIDMQDNLKMTNQGKTP-----FPTVPSIV 100
            N+ S +   Q+A    +  I G +     D   +   ++  + +               
Sbjct: 1   MNIASVIPL-QRAAGDDMAVICGVKLNVVDDPTYEHRARLAKESERCMESLVRDRSYCFT 59

Query: 101 LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            L+   +GY+ + EL++     +Q     R+ L  L     +G I+L     G + +   
Sbjct: 60  ALIKNEQGYRDVCELMTLANKREQFYFVPRLALDQLAAAYAKGNIILLTSDIGSVFQ--- 116

Query: 161 FNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
                 A+           D  Y  +  H   +      + +++A   ++  VA   + +
Sbjct: 117 --RRDFAKIIGTLVTAGGRDNFYSVVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYY 174

Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY-----LKNRSEMVSIFS---DLP--E 269
            + +D +  D+   V ++  + Q  R R+           ++  E +  FS   D+P   
Sbjct: 175 EAVDDADIKDIAHMVTNNIKIDQPHRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTA 234

Query: 270 ALENTVE--IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL---A 324
           A+ +T +  I   C++      P LP+  + E           L   AVAGL  RL    
Sbjct: 235 AMASTTQDTIIEACTWRWHELPPALPKMADDE--------PATLMKLAVAGLRKRLTTKE 286

Query: 325 QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            G        + Y  RL +E++ + R+ F GYFL+V D +  +++  IPVGPGRGS AGS
Sbjct: 287 FGYTPPASEHRVYVDRLKYEMDTLTRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGS 346

Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
           + A+ + IT++DP+R  LLFERF+NP+R+ +PD D+DF Q RR EVI Y+  +YG + VA
Sbjct: 347 LVAWCIGITNVDPIRHGLLFERFINPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVA 406

Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            I  F  L A +ALRD  R   +  + +  + K   N     +SL+ + +  +       
Sbjct: 407 GIPNFTYLGAASALRDTARIYGVDAADM-AVSKEFKNLEDDSLSLEELRE--QLASLDKY 463

Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
                   + + KL+ L R    HAAG+++   PL +  P+   +R +     F+ ++ E
Sbjct: 464 ATKYPEAFKAACKLQSLMRGFGRHAAGMIVAGVPLVERTPVE--LRGNARCIAFDKRYCE 521

Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
             GLIK D LGL TL LL  +  ++ +  G  ++L  IP DD +         T G+FQL
Sbjct: 522 AMGLIKLDVLGLATLDLLDSAKRYIKESTGEDINLDAIPLDDRKVLDGFAAGYTQGVFQL 581

Query: 624 ESSGMRQALEGMQ----PDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL 677
           ES  MR+ L+ +     P   + ++A  +L+RPGPI + +   Y +   G     S+HP+
Sbjct: 582 ESGPMRKLLKDLGGGIEPMSFKTVVATTALFRPGPIQSGMLDDYVSVAKGFMAPQSLHPV 641

Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
           +D +  ET GVI+YQEQ M   +LL+G++++EAD +R+A+GKK  E+M    E+F+  A 
Sbjct: 642 LDELTAETNGVILYQEQTMNATRLLAGFTMAEADGVRKAIGKKDMEKMKSMGEKFVVQAQ 701

Query: 738 KNGIS----------------------------------------------------KTI 745
              I                                                     +T 
Sbjct: 702 AGWIDVEMEDGTTQRIHRAEHFKCEDGALRTVEEALEAGVKLPMAAVRVTGSQPGLSETK 761

Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
           A  I++   K   Y FNKSH  AY++ISYQ+ W+KTHYP EF AA++T+     +K +  
Sbjct: 762 AKEIWDAFEKNGAYQFNKSHPVAYSLISYQSMWLKTHYPAEFFAAALTI--LGEDKHQGL 819

Query: 806 CQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASA-- 858
            +DA  + I ++PP VN      ++     G   +Y   +A+KG      + IM A    
Sbjct: 820 VKDALTYGIHVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGCQAIMRAREKV 879

Query: 859 DKPFDSLEDFCSRVDSK--KLNRRVLESLVFAGALDCFGY 896
              F+SLE F   V+ +    N RV ESL   GA      
Sbjct: 880 GGKFESLEQFEEAVEKRACACNSRVRESLQKVGAFASIEP 919


>gi|309807095|ref|ZP_07701074.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
           03V1-b]
 gi|308166525|gb|EFO68725.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
           03V1-b]
          Length = 658

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 221/665 (33%), Positives = 339/665 (50%), Gaps = 29/665 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6   LQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
           Q          +   G         ++++     GYQ ++ L S + L  + GK+ + + 
Sbjct: 66  Q----------LRINGLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
           L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLVKILPQSSNLYLGVFADK 174

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
               Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +       +  
Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLKSIDDNQSIRDGYELTLKH 233

Query: 250 -PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +HYLK + ++   ++ L   EAL NT +++   +  ++   P LP+FI+ + D     
Sbjct: 234 VGNHYLKTKDKLCESYNSLGILEALRNTKQVSDDSNVEIKFTMPQLPKFIQHKFD----T 289

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               L + A+ GL+ +       K      Y  RL +EL +I  M F+ YFLIV D I +
Sbjct: 290 SYEFLHHLAMTGLQAKF-----NKHDIPSKYLNRLKYELKIIDEMGFNDYFLIVWDVINY 344

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
                I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   +R
Sbjct: 345 CHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPDNR 404

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       +D   K IP   +  
Sbjct: 405 RNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITIDSWLKAIPKSKSKI 464

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V + 
Sbjct: 465 TLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQ 524

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                 +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP DD 
Sbjct: 525 NGSL-GIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLDDP 583

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  RK 
Sbjct: 584 ATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKI 643

Query: 667 GKEKI 671
            K++ 
Sbjct: 644 RKKRW 648


>gi|309805737|ref|ZP_07699777.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
           09V1-c]
 gi|308164990|gb|EFO67233.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
           09V1-c]
          Length = 658

 Score =  522 bits (1345), Expect = e-145,   Method: Composition-based stats.
 Identities = 220/665 (33%), Positives = 338/665 (50%), Gaps = 29/665 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6   LQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
           Q          +   G         ++++     GYQ ++ L S + L  + GK+ + + 
Sbjct: 66  Q----------LRINGLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
           L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
               Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +       +  
Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLKSIDDNQSIRDGYELTLKH 233

Query: 250 -PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +HYLK + ++   ++ L   EAL NT ++    +  ++   P LP+FI+ + D     
Sbjct: 234 VGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD----T 289

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               L + A+ GL+ +       K      Y  RL +EL +I  M F+ YFLIV D I +
Sbjct: 290 SYEFLHHLAMTGLQAKF-----NKHDIPAKYLNRLKYELKIIDEMGFNDYFLIVWDVINY 344

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
                I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   +R
Sbjct: 345 CHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPDNR 404

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       ++   K IP   +  
Sbjct: 405 RNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKSKI 464

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V + 
Sbjct: 465 TLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQ 524

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                 +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP DD 
Sbjct: 525 NGSL-GIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLDDP 583

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  RK 
Sbjct: 584 ATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKI 643

Query: 667 GKEKI 671
            K++ 
Sbjct: 644 RKKRW 648


>gi|297520197|ref|ZP_06938583.1| DNA polymerase III subunit alpha [Escherichia coli OP50]
          Length = 490

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 205/506 (40%), Positives = 294/506 (58%), Gaps = 22/506 (4%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             P FVHL+VHS  S+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2   SEPRFVHLRVHSDCSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62  IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246 P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
           P   +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +     
Sbjct: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 287 -STEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482 DPAHPVSLQAIADDSRFREARLADPS 507
           DP   +  +A   + +  E   AD  
Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEE 490


>gi|256425821|ref|YP_003126474.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
 gi|256040729|gb|ACU64273.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
          Length = 982

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 250/1037 (24%), Positives = 435/1037 (41%), Gaps = 115/1037 (11%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L   + +SL  G +    ++         ++A+T+ N       F ++    GI+PIIG
Sbjct: 2    YLNCKTFFSLRYGTIDTKELVKTARQMGITSLALTNINITSDTWNFVKECQDNGIKPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             +   +                     +LL    EG+  +   +S  +L        R  
Sbjct: 62   LECRNNHD----------------LKYILLARNMEGWFYINRFLSD-HLHKDLPFPDRAP 104

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-VNLQRHRG 191
                      G+  +                         T+  +    LY   L   R 
Sbjct: 105  -------AFPGVFAI------------------------YTWNTVPLQDLYEHELVGIRK 133

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTP 250
             D  +  +V  L       LV  +   F + + Y  H +L AV  + ++SQ +D      
Sbjct: 134  RDINKLFRVDTLCCQD--KLVILHPVTFQNADYYHLHRILRAVDQNILISQLQDHTAAHT 191

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            D    +  ++   F   P  + NTV +   C       +P   ++        + E+   
Sbjct: 192  DEMFISPGDLFDSFEQYPHIISNTVRVMDACQISFDFKSPRNKKYFT----TSEAEDHAL 247

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A  G+  R        G    + ++R++ EL+V+    F+GYFLI  D I++A++ 
Sbjct: 248  LRKLAYEGMLERY-------GPDNTEAKERIEKELDVVQGQHFNGYFLITWDIIRYAQER 300

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
                  GRGSGA S+ AY L ITD+DP+  +L FERFLNP R S PDFDIDF    RDE+
Sbjct: 301  GFFY-VGRGSGANSIIAYCLKITDVDPIELNLYFERFLNPYRSSPPDFDIDFSWKDRDEI 359

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I YV  KYG    A + T  + Q  A +R++G+   +P  ++D++               
Sbjct: 360  IAYVFKKYGTAHTALLGTVTTFQQNATIRELGKVYGLPKQEIDKI--------------- 404

Query: 491  AIADDSRFREARLADPSVDRLLEISQKL----EGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                D+ F      D    ++L  SQ +    +    H S HA GI+I + P+ Q    Y
Sbjct: 405  ---LDTPFNPDLSGDSVQQKILRYSQLMSNDNKAFPNHLSIHAGGILISEAPIHQHCSTY 461

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP---- 602
               +      Q +M   E  GL KFD L  + L  ++ ++  + +     D+ +      
Sbjct: 462  LPPK-GFSTAQLDMHQAEAIGLFKFDILSQRGLGHIRDAISIIREN-KGDDIDIHNVKAF 519

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
              D    H L T  T+G F +ES  MRQ L  ++      ++A  S+ RPG   + ++  
Sbjct: 520  MRDERVKHALQTVNTIGCFYIESPAMRQLLLKLECHDYLTLVAASSVIRPGVAQSGMMRQ 579

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y +    ++++V +H ++  +L ET G+++YQE V++I    +   L++AD+LRRAM  K
Sbjct: 580  YVHNYRHQDQVVYLHEIVKEVLSETFGIMVYQEDVIKIVSRYANMDLADADILRRAMAGK 639

Query: 721  IKEEMDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
             + + D QK  ++F +   K G    +   ++  +A F+ + F+K+H+A++AV SYQ+ +
Sbjct: 640  YRGQGDFQKIEQQFFNNCKKLGRPDAVTAELWRQIASFSGFSFSKAHSASFAVESYQSLY 699

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +KT+YP EF+ A +          + + ++ ++  + I PP +N      ++ D+ +Y  
Sbjct: 700  LKTYYPAEFMVAVIN-NFGGFYNRELYFRELQKTGVTIKPPCINNSDYYTRINDDIVYTG 758

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
               ++G+       ++E      P+ SLEDF +R+         L+ L+  GA     Y+
Sbjct: 759  FIHVEGLEVKWMERVLEERGQYGPYASLEDFATRI---APPPEQLDILIRIGAFSFDTYT 815

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            + +L       +       K+   +H      E+        L   + EN+      E  
Sbjct: 816  KKEL-----LWKSSLLLKAKSPHAEHIQPLFREELPDCQLPMLAYTAHENAFE----EIA 866

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            +LGF     P  + +    +        +     G  I     +V  +   T KG  + +
Sbjct: 867  LLGFPLCS-PFTILQHDQSRY---ITANNFRQYTGQTINALGYLVCTKGIHTSKGIPMSF 922

Query: 1018 VTFSEPAKE-YEANFFP 1033
             TF +   +  +   FP
Sbjct: 923  GTFMDANGDFIDTVHFP 939


>gi|166214646|ref|ZP_02240681.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166204168|gb|EDR48648.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Antiqua
           str. B42003004]
          Length = 949

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 256/888 (28%), Positives = 407/888 (45%), Gaps = 104/888 (11%)

Query: 93  FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                    L+   +GY+ + EL++     +Q     R+ L  L     +G I+L     
Sbjct: 6   RDRSYCFTALIKNEQGYRDVCELMTLANKREQFYFVPRLALDQLAAAYAKGNIILLTSDI 65

Query: 153 GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPL 211
           G + +         A+           D  Y  +  H   +      + +++A   ++  
Sbjct: 66  GSVFQ-----RRDFAKIIGTLVTAGGRDNFYSVVYPHPTPFYDQINVRAMKVASALKIEP 120

Query: 212 VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY-----LKNRSEMVSIFS- 265
           VA   + + + +D +  D+   V ++  + Q  R R+           ++  E +  FS 
Sbjct: 121 VAFYPAYYEAVDDADIKDIAHMVTNNIKIDQPHRLRIPHQRDNAVNGRRHLLEALKAFSV 180

Query: 266 --DLP--EALENTVE--IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
             D+P   A+ +T +  I   C++      P LP+  + E           L   AVAGL
Sbjct: 181 RMDVPVTAAMASTTQDTIIEACTWRWHELPPALPKMADDE--------PATLMKLAVAGL 232

Query: 320 EVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             RL     G        + Y  RL +E++ + R+ F GYFL+V D +  +++  IPVGP
Sbjct: 233 RKRLTTKEFGYTPPASEHRVYVDRLKYEMDTLTRLGFCGYFLMVRDLMNHSRETGIPVGP 292

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGS AGS+ A+ + IT++DP+R  LLFERF+NP+R+ +PD D+DF Q RR EVI Y+  
Sbjct: 293 GRGSSAGSLVAWCIGITNVDPIRHGLLFERFINPERLDLPDADLDFSQARRHEVIEYLNE 352

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
           +YG + VA I  F  L A +ALRD  R   +  + +  + K   N     +SL+ + +  
Sbjct: 353 RYGEDYVAGIPNFTYLGAASALRDTARIYGVDAADM-AVSKEFKNLEDDSLSLEELRE-- 409

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +               + + KL+ L R    HAAG+++   PL +  P+   +R +    
Sbjct: 410 QLASLDKYATKYPEAFKAACKLQSLMRGFGRHAAGMIVAGVPLVERTPVE--LRGNARCI 467

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTK 615
            F+ ++ E  GLIK D LGL TL LL  +  ++ +  G  ++L  IP DD +        
Sbjct: 468 AFDKRYCEAMGLIKLDVLGLATLDLLDSAKRYIKESTGEDINLDAIPLDDRKVLDGFAAG 527

Query: 616 GTLGIFQLESSGMRQALEGMQ----PDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            T G+FQLES  MR+ L+ +     P   + ++A  +L+RPGPI + +   Y +   G  
Sbjct: 528 YTQGVFQLESGPMRKLLKDLGGGIEPMSFKTVVATTALFRPGPIQSGMLDDYVSVAKGFM 587

Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
              S+HP++D +  ET GVI+YQEQ M   +LL+G++++EAD +R+A+GKK  E+M    
Sbjct: 588 APQSLHPVLDELTAETNGVILYQEQTMNATRLLAGFTMAEADGVRKAIGKKDMEKMKSMG 647

Query: 730 ERFISGASKNGIS----------------------------------------------- 742
           E+F+  A    I                                                
Sbjct: 648 EKFVVQAQAGWIDVEMEDGTTQRIHRAEHFKCEDGALRTVEEALEAGVKLPMAAVRVTGS 707

Query: 743 -----KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
                +T A  I++   K   Y FNKSH  AY++ISYQ+ W+KTHYP EF AA++T+   
Sbjct: 708 QPGLSETKAKEIWDAFEKNGAYQFNKSHPVAYSLISYQSMWLKTHYPAEFFAAALTI--L 765

Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARH 852
             +K +   +DA  + I ++PP VN      ++     G   +Y   +A+KG      + 
Sbjct: 766 GEDKHQGLVKDALTYGIHVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGCQA 825

Query: 853 IMEASA--DKPFDSLEDFCSRVDSK--KLNRRVLESLVFAGALDCFGY 896
           IM A       F+SLE F   V+ +    N RV ESL   GA      
Sbjct: 826 IMRAREKVGGKFESLEQFEEAVEKRACACNSRVRESLQKVGAFASIEP 873


>gi|318061695|ref|ZP_07980416.1| DNA polymerase III subunit alpha [Streptomyces sp. SA3_actG]
 gi|318079204|ref|ZP_07986536.1| DNA polymerase III subunit alpha [Streptomyces sp. SA3_actF]
          Length = 761

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 182/659 (27%), Positives = 298/659 (45%), Gaps = 31/659 (4%)

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
             + + I   DPL   LL ERFL+  R  +PD DID    RR EV R +  ++G ERVA +
Sbjct: 1    NHLIGIAHADPLEHGLLMERFLSKRRSVLPDIDIDVESARRIEVYRAILGRFGPERVATV 60

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
                + + + A+RDVG AL +  + +DR+    P+  A      A+ +            
Sbjct: 61   AMPETYRVRHAIRDVGAALSLDPADIDRIATAFPHIRARDART-AMDELPELASVAAERE 119

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
                  E+ + L+ L R  + H  G+++ D  L    P+       LP+ QF+ + +E  
Sbjct: 120  KYGTFWELVEGLDALPRGVAMHPCGVLLSDASLLSRTPVVPTSGESLPMAQFDKEDVEDL 179

Query: 567  GLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K D LG++  + +  +L +     G   D+  IP  D  TY L+ +  TLG FQ+ES
Sbjct: 180  GLLKLDVLGVRMQSAMAHALSELDRATGEAPDIDAIPPGDERTYQLIRSTETLGCFQIES 239

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             G R  +  +QP    D++  +SL+RPGP+  D +  +   ++G+  +   HP + P L+
Sbjct: 240  PGQRDLVGRLQPSTFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRYPHPDLAPALE 299

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T GV+++ EQV+ +   ++G    EAD +RR +     E   + +  F   A++ G   
Sbjct: 300  DTYGVVVFHEQVIDLVHTMTGCGRDEADRVRRGLS--DPESQGRIRFWFAQRAAERGYDA 357

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                  +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +
Sbjct: 358  ETVTRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-R 416

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG----------DNRIYYSLAAIKGVGTTTARHI 853
                DAR+  + I+P  VN      ++              +   L+ + G+       I
Sbjct: 417  LLLADARRRGVPILPVDVNHSAPAHRIELVSENGPPAARWGVRLGLSDVHGMSEAEGERI 476

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
              A   +P+ SL DF  R    + +R V E L   GALD FG +R  LL  L  + +  +
Sbjct: 477  AAA---QPYTSLLDFWQRA---RPSRPVAERLAQVGALDAFGANRRDLLLHLAELHRMGR 530

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
                     H        G  +    L      + + R   E  VLG   S H +  ++ 
Sbjct: 531  GAA-----SHGTQLPLSGGRRTAPAGLPDL---DETERLSAELGVLGMDASRHLMGDHQE 582

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             LR++G+           G  + +A    + Q    R G R+ + T  +     +  FF
Sbjct: 583  FLRELGVVSARRLREAPHGATVLVAGAKAATQTPPIRSGKRVVFTTLDDGTGLVDLAFF 641


>gi|229897023|ref|ZP_04512182.1| DNA polymerase III alpha subunit [Yersinia pestis Pestoides A]
 gi|229700059|gb|EEO88099.1| DNA polymerase III alpha subunit [Yersinia pestis Pestoides A]
          Length = 905

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 254/918 (27%), Positives = 416/918 (45%), Gaps = 110/918 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L V + +SL E AL   N +         A+   D+ N+ S +   Q+A    +  I G 
Sbjct: 4   LMVRTDFSLGESALKAENAVKIARDAGYTAVISADSMNIASVIPL-QRAAGDDMAVICGV 62

Query: 74  Q----LDIDMQDNLKMTNQGKTP-----FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +     D   +   ++  + +                L+   +GY+ + EL++     +Q
Sbjct: 63  KLNVVDDPTYEHRARLAKESERCMESLVRDRSYCFTALIKNEQGYRDVCELMTLANKREQ 122

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                R+ L  L     +G I+L     G + +         A+           D  Y 
Sbjct: 123 FYFVPRLALDQLAAAYAKGNIILLTSDIGSVFQ-----RRDFAKIIGTLVTAGGRDNFYS 177

Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +  H   +      + +++A   ++  VA   + + + +D +  D+   V ++  + Q 
Sbjct: 178 VVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYEAVDDADIKDIAHMVTNNIKIDQP 237

Query: 244 DRPRVTPDHY-----LKNRSEMVSIFS---DLP--EALENTVE--IARRCSFILQVHAPI 291
            R R+           ++  E +  FS   D+P   A+ +T +  I   C++      P 
Sbjct: 238 HRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEACTWRWHELPPA 297

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVI 348
           LP+  + E           L   AVAGL  RL     G        + Y  RL +E++ +
Sbjct: 298 LPKMADDEPAT--------LMKLAVAGLRKRLTTKEFGYTPPASEHRVYVDRLKYEMDTL 349

Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
            R+ F GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFERF+
Sbjct: 350 TRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFI 409

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
           NP+R+ +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R   + 
Sbjct: 410 NPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIYGVD 469

Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            + +  + K   N     +SL+ + +  +               + + KL+ L R    H
Sbjct: 470 AADM-AVSKEFKNLEDDSLSLEELRE--QLASLDKYATKYPEAFKAACKLQSLMRGFGRH 526

Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
           AAG+++   PL +  P+   +R +     F+ ++ E  GLIK D LGL TL LL  +  +
Sbjct: 527 AAGMIVAGVPLVERTPVE--LRGNARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRY 584

Query: 589 LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ----PDCIEDI 643
           + +  G  ++L  IP DD +         T G+FQLES  MR+ L+ +     P   + +
Sbjct: 585 IKESTGEDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTV 644

Query: 644 IALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
           +A  +L+RPGPI + +   Y +   G     S+HP++D +  ET GVI+YQEQ M   +L
Sbjct: 645 VATTALFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDELTAETNGVILYQEQTMNATRL 704

Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS------------------- 742
           L+G++++EAD +R+A+GKK  E+M    E+F+  A    I                    
Sbjct: 705 LAGFTMAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWIDVEMEDGTTQRIHRAEHFKC 764

Query: 743 ---------------------------------KTIAVNIFELLAKFADYGFNKSHAAAY 769
                                            +T A  I++   K   Y FNKSH  AY
Sbjct: 765 EDGALRTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEIWDAFEKNGAYQFNKSHPVAY 824

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
           ++ISYQ+ W+KTHYP EF AA++T+     +K +   +DA  + I ++PP VN      +
Sbjct: 825 SLISYQSMWLKTHYPAEFFAAALTI--LGEDKHQGLVKDALTYGIHVLPPDVNVSSNRIE 882

Query: 830 V-----GDNRIYYSLAAI 842
           +     G   +Y   +A+
Sbjct: 883 IRTLEDGSQVLYAPFSAV 900


>gi|255038661|ref|YP_003089282.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053]
 gi|254951417|gb|ACT96117.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053]
          Length = 989

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 244/1038 (23%), Positives = 429/1038 (41%), Gaps = 111/1038 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  HS +SL  G +  + +L     +    +A+TD NN    L F + A    I+PI+G 
Sbjct: 3    LNCHSYFSLRFGTIPEDELLAMCRENGYDCVALTDINNTSGCLNFVRMAPRFDIKPIVGI 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                                      V L     G+Q L   +S   L           +
Sbjct: 63   DFRN----------------GVTQQFVALAKNNAGFQVLNAYLSAQKLAGLPFPDRAPEM 106

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              +  I                            EK     ++ FG   Y+ +      D
Sbjct: 107  EHVAVIYPF-------------------------EKLNKERREQFGPNEYIGISMQE-LD 140

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   S +    +     LV      F +++D+ AH +L A+  +T++S+        +  
Sbjct: 141  KLHYSPL----HRFRDRLVIRQPVTFRNKKDFNAHRLLRAIDENTLLSKLAASETGNESE 196

Query: 254  LKNRSEMVSIF---SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               +++++       D    LENT ++   C            + ++    + ++E+  +
Sbjct: 197  QIVQAKVLEYHFKQKDFRIILENTRKLMDECEIRFTFGNEREHQNLKIFGKN-EEEDFKK 255

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR+     L  R             +   R+  EL++I +  F  +FL+  D + +A++ 
Sbjct: 256  LRSMTYQALGYRYGDNI------TDEIFDRIAKELDMIRQQNFVPFFLVNHDIVSYARRK 309

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
                  GRGSGA S+ AY L IT++DP+   L FERF+N  R + PDFDIDF    R++V
Sbjct: 310  GYYY-VGRGSGANSIIAYLLNITNVDPIELDLYFERFINLHRKNPPDFDIDFSWRDREDV 368

Query: 431  IRYVQNKYGHE-RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             RY+ + YG   + A + T+ + Q  +A+R++G+   +P  ++D L              
Sbjct: 369  TRYIFDTYGKNGQAALLATYSTFQHNSAVRELGKVFGLPAYEIDALS------------- 415

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLE--GLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                D  +       D     ++  +  L+      H S HA GI+I  RP+        
Sbjct: 416  NGKYDPKKL------DQLSGLVIRYADYLQANNQPNHLSIHAGGILISQRPMHYFTATDV 469

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP---- 602
              +   P TQF+M   E  GL K+D LG + L  ++++L+ +   R    D  +      
Sbjct: 470  PPK-GFPTTQFDMVIAEDVGLNKYDILGQRGLAKIKETLEIIRYNRPEAPDFDINDVRKF 528

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
              D +   L+     +G F +ES  MR  L+ ++ D    ++A  S+ RPG   + ++  
Sbjct: 529  KTDPKINDLIRQAQCIGCFYVESPAMRMLLKKLEVDNYLGLVAASSIIRPGVAKSGMMRE 588

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  R    EK    HP +  +++ET G+++YQE V+++A   +G +L EADV+RR M  K
Sbjct: 589  YILRHRHPEKRSEAHPRLLELMEETYGIMVYQEDVIKVAHYFAGLTLGEADVIRRGMSGK 648

Query: 721  I--KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
               +EE ++ K+++       G  + + ++++  +A FA + F K H+A+YAV SYQT +
Sbjct: 649  FRGREEFERVKKKYFKNCRSKGYDEAMTMDVWNQIASFAGFAFAKGHSASYAVESYQTLF 708

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +KT++P+EF+ A +          + +  +AR     +  P VN       +  ++IY  
Sbjct: 709  LKTYFPLEFMVAVLN-NGGGFYAPELYIHEARMLGAHVHAPCVNHSEAHATIEGDQIYLG 767

Query: 839  LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            +  +  +   T   I+ A   D  F SL DF  RV    ++   L  L+   A    G  
Sbjct: 768  MQFLNDLEAKTIDRILAARGQDGAFTSLNDFLDRVP---ISIEQLTILIRIDAFRFTGVD 824

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ- 956
            +  LL       + +    K      + +F  E   F     L +F   +S +    +Q 
Sbjct: 825  KKTLLW--KAHFRLSTTPTKA---PQKQLFQAEVRDF----KLPEFH--SSILDDAYDQV 873

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             +LGF     P ++ K  L K         +       +     +V+ +  +T +G  + 
Sbjct: 874  ELLGFPLCS-PFNLLKNPLPK---SIMANDLHNYVNQEVVQYGYLVALKNTRTARGESMQ 929

Query: 1017 WVTFSEPAKE-YEANFFP 1033
            + TF +      +   FP
Sbjct: 930  FGTFLDYEGHFIDTVHFP 947


>gi|258539578|ref|YP_003174077.1| DNA polymerase III subunit alpha [Lactobacillus rhamnosus Lc 705]
 gi|257151254|emb|CAR90226.1| DNA polymerase III, alpha subunit [Lactobacillus rhamnosus Lc 705]
          Length = 636

 Score =  519 bits (1337), Expect = e-144,   Method: Composition-based stats.
 Identities = 215/660 (32%), Positives = 326/660 (49%), Gaps = 45/660 (6%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +F  LQVHS+Y+LL   L+L +++         A+A+TDTN ++  +EF ++A AAG++P
Sbjct: 2   TFTQLQVHSNYTLLHSPLALPDLIQAAKNRGYSAVALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           ++G Q++I                     ++++     GY +L++L +++ L  Q     
Sbjct: 62  LLGMQIEIAD-----------------AKLLVIAENNTGYHQLLKLSTQIMLAQQ----- 99

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
              L++   +   GL  +T   S P   A        A+  L T K      LY+ +   
Sbjct: 100 --PLAFADLLPLNGLAAVTLPDS-PFGVAVSERHEDQAQTFLTTLKAKQPSSLYIGV--- 153

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
              + + E  +   A T +LPL+A  N L+    D     V++A+   + ++ +D     
Sbjct: 154 --DEEHLEGTLPAFADTVKLPLLALGNVLYRDPTDAFTQKVMVAIETGSQLNFRDPVLTD 211

Query: 249 TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               +LK  ++    F  + L  A+  T  IA R    +    P LP +   +    Q  
Sbjct: 212 AGPAWLKPPTDAAKPFVQAGLQAAVTQTEAIAARADVTIDFKQPQLPHYQTPD----QTP 267

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            ++ L   A +GL  R    +I        Y+ RL +EL VI  M F+ YFL+V D + +
Sbjct: 268 SKDYLTKLAESGLAKRFHGQSI-----PPAYQDRLQYELRVIIEMGFADYFLVVWDVMNY 322

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A K NI  G GRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D+D   +R
Sbjct: 323 AHKVNIMPGAGRGSAAGSLVSYALAITEVDPIEYNLLFERFLNPARAQMPDIDLDIPDNR 382

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R E+I+YV +KYG   +AQIITFG+  AK A+RDV R   +   + +   K IPN     
Sbjct: 383 RGELIQYVHDKYGKNHMAQIITFGTFGAKQAIRDVARVFGLSQFESNTWSKAIPNLFHID 442

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           +   A       +      P    L + +  LEGL RH STHAAGIV+ + PL+  V + 
Sbjct: 443 LKT-AYEQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                 L  TQ     +E  GL+K DFLGLK L +L  +  F+ +      D   IP DD
Sbjct: 502 -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGKPFDPKAIPLDD 560

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T  L     T G+FQ ESSG++  L  ++P   ED++A+ +LYRPG    ++     K
Sbjct: 561 QPTLALFARGDTNGVFQFESSGIKNVLRKLRPTAFEDVVAVNALYRPGRWRTLIPSLRAK 620


>gi|293363769|ref|ZP_06610510.1| putative DNA polymerase III DnaE [Mycoplasma alligatoris A21JP2]
 gi|292552635|gb|EFF41404.1| putative DNA polymerase III DnaE [Mycoplasma alligatoris A21JP2]
          Length = 973

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 268/962 (27%), Positives = 443/962 (46%), Gaps = 103/962 (10%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           +L  ++ YS L   + L  + +        A+++TD NN+F+  EF   +    I+P+I 
Sbjct: 5   YLHTNTEYSFLNSTIKLTELFELAKQKNISALSMTDINNMFALGEFLNLSKQYQIKPLI- 63

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                           G        S ++     +GY  L ++          + S  I 
Sbjct: 64  ----------------GIEIEQKNVSFMVFAKNYDGYVLLNKI--------AFEVSKNIE 99

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
           L+ +    +  LI++   ++G + +                    F +  + N +     
Sbjct: 100 LN-IDLFNSNNLIIIDHLTNGFVAKGIEIP---------------FKNNFWFNSK----- 138

Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
            +    Q +        P+        L +   +A   L +  ++ V   +       + 
Sbjct: 139 -KLLNDQTI------YAPVKKV-----LLKNQNQALKALQSTGNNKVYDFEYEDYFNDND 186

Query: 253 YLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
                      F D+    L+N  ++       +  ++  L +F          E +  L
Sbjct: 187 -----------FKDVNILVLQNIKKLVESIDIKIPDNSLKLAQFKTD------IENDQYL 229

Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
               +  L+    + A    +      +RL+FE   I ++ F  YFLI+ D + +A+KN 
Sbjct: 230 YMLCLNSLKKLENEFA---SFDKTFVLERLNFEFETIKKLGFVNYFLIINDVLSYARKNG 286

Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
           I VGPGRGS AGS+ ++ L IT I+PL+++LLFERFLN  R+S+PD DID   DRRDE+ 
Sbjct: 287 IYVGPGRGSAAGSLISFLLEITQINPLKYNLLFERFLNIQRVSLPDIDIDIQDDRRDEIA 346

Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
           +Y+  KYG++  A I TF S+ AK A+RD+GR L +P  +VD + K I       ++   
Sbjct: 347 QYIVEKYGYQNTAFISTFQSIGAKMAIRDIGRYLNIPLKKVDSISKSI------DLNEDL 400

Query: 492 IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                  R  +     +  LLE++ ++EGL R    H AGI+I DR ++ + P      +
Sbjct: 401 KTASKSNRSFKAEIEELPELLELALQIEGLPRQQGMHPAGIIICDREITNIAPT-HANTA 459

Query: 552 DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIP--FDDHET 608
           ++   Q  +  +EK GL+K DFLGLKTL++++     + +       L   P   ++++T
Sbjct: 460 NMAQVQLTLNNLEKYGLLKIDFLGLKTLSIIRDIESVIPEEYKFDFLLKNNPSILNNNDT 519

Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
           + +L    T GIFQLES GM+ A++ ++ D   D++A++SL+RPGP+  I  Y   K   
Sbjct: 520 FRILNEGLTEGIFQLESPGMKSAIKKVEIDSFNDLVAIISLFRPGPMQFINDYAKGKKDS 579

Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
           + I  IHPL D ++KET GVI+YQEQ+MQI Q +S  S S+AD+LRRA+ KK +  +   
Sbjct: 580 KLIEKIHPLYDEIVKETFGVIVYQEQIMQIVQKVSNMSFSQADLLRRAISKKDENLIHSG 639

Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
           K+ FI    KN I   +   I++ +  FADYGFNKSHA AYA ++Y+ A+ KT+Y   F 
Sbjct: 640 KKEFIQNGLKNNIELNVLEKIYKRIEMFADYGFNKSHAVAYAYLTYKMAYYKTNYKNVFY 699

Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A +T        I K+ ++ ++ N+ +  P +N       V    ++  +  IKGVG  
Sbjct: 700 RALITSANGTHLTINKYVKETKKINLPVASPDINRSKNYVVVSGGILFLPINMIKGVGGA 759

Query: 849 TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               I+E    +  F+S  +   R+    +   +L  L+ +  L  FG +   LL SL  
Sbjct: 760 ALSKILEQRDKNGVFNSFFETYLRLRLAGVGEAILLLLIKSNTLRIFG-NCAALLNSLSL 818

Query: 908 I--------QKYAQWVEKNRTNKHENI-FAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
                     K  +          E + F         K+ L    ++  +   + E  +
Sbjct: 819 AKNYFETFKLKMTRQKIDETNYDQELLEFIKSNDLSDQKLILSDREIDLEA---DYELEL 875

Query: 959 LG 960
           LG
Sbjct: 876 LG 877


>gi|326800819|ref|YP_004318638.1| DNA polymerase III subunit alpha [Sphingobacterium sp. 21]
 gi|326551583|gb|ADZ79968.1| DNA polymerase III, alpha subunit [Sphingobacterium sp. 21]
          Length = 980

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 232/1034 (22%), Positives = 450/1034 (43%), Gaps = 114/1034 (11%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L VHSSYSL  G + L+ ++++        + +TD NN  + ++F  KA  AGI+ ++G
Sbjct: 2    YLNVHSSYSLRYGTIDLDVLIEETRKLGISEMVLTDINNSSACMDFILKARVAGIRALVG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             +   + Q                   + +    +G + L + ++               
Sbjct: 62   IEFRKEDQ----------------LLYIGIARNRKGMKELNDFLT--------------- 90

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
                        ++L      P+             ++           L +    + G 
Sbjct: 91   ------YHQLCNLVL--PERAPVF------------EQAYVIYPFKAVSLMLAEHEYVGV 130

Query: 193  DRYRESQVVQLAYTH-ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                 +Q+ +L     +  LVA  +  F  ++ Y  H  L A+  +T++++ +   +  +
Sbjct: 131  RPQDINQLFRLDMALIQRKLVALYSVTFQDKKHYRLHQYLRAIDQNTLLTKVNEIDICQE 190

Query: 252  -HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               L+   E+  ++S     L+N  ++   CS           R  ++   D +  +   
Sbjct: 191  TESLRPLEELQRLYSGYEYLLDNAHQLLANCSTD----DYHFGRLNKQTFTDSKANDAIL 246

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L    +AG+  R   G +         +Q+++ EL V+ +M F  YFLI  D I +++  
Sbjct: 247  LEKLTLAGMHDRYGSGNMQA-------KQKIEAELAVVKQMDFCAYFLITWDVINYSRSR 299

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
                  GRGSGA S  AY L ITD+DP+   L FERFLN  R S PDFDID+   +R+E+
Sbjct: 300  GF-YHVGRGSGANSTVAYCLGITDVDPIALDLYFERFLNSKRSSPPDFDIDYSWHQREEI 358

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
              Y+  +YG      + T  + + ++ +R++G+ L +P S++D                 
Sbjct: 359  QAYLLKRYGIAYTGLLGTISTFKGRSVIREIGKVLGLPKSEIDSFT-------------- 404

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                D         +P+  +++ + + ++G+    S HA G+++ + P++    +    +
Sbjct: 405  ----DPTQDAVNQDNPTFRKIMAVYELMDGMPNQRSIHAGGVLVSEEPITFYTALDLPPK 460

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS--LIPFDDHE 607
            + +P  Q++M   E  GL KFD L  + +  ++++++ + Q +G  VD+        D +
Sbjct: 461  A-MPTVQWDMYAAEAIGLDKFDILSQRGIGHIKEAVELIRQNKGKSVDIHAVKSFLIDEQ 519

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRK 665
                L    ++G F +ES  MRQ L+ +Q      ++A  S+ RPG   + +   Y    
Sbjct: 520  INRRLGASDSIGCFYIESPAMRQLLQKLQCRDYLTLVAASSIIRPGVASSGMMRNYIYYF 579

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +  ++++ +HP++   LKET GV++YQE V+++    +G  L++ADVLRRAM  K +   
Sbjct: 580  HHPDEVIYLHPVMKEQLKETYGVMVYQEDVIKVCYHYAGLDLADADVLRRAMSGKYRSRD 639

Query: 726  DKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
              QK  ++F   A   G  +     ++  ++ FA Y F+K+H+A++A+ SYQ+ ++KT++
Sbjct: 640  AFQKLVDKFFLSAKTIGRDEATTEEVWRQISSFAGYSFSKAHSASFAIESYQSLYLKTYF 699

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P EF+ A +            +  + ++    +  P VN       +    +Y  L  I+
Sbjct: 700  PQEFMVAVLN-NYGGFYARWLYVHELKKTGATVHLPCVNNSEEKVTINGRDVYLGLIGIQ 758

Query: 844  GVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            G+     + I  E   + PF  L DF  R D   +    L  L+  GAL   G ++ +LL
Sbjct: 759  GLNEHFIKLIPCERVTNGPFQDLTDFIRRTD---IGLEQLAILIKVGALRFTGRTKKELL 815

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG-- 960
                     +   ++++      +FA     ++    L    +E++      E  +LG  
Sbjct: 816  WDSHLYMGGSVKPKRDKE-----LFAIVNKQYT-MPALPDERLEDA----YQELDLLGYP 865

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
               +    D+ K      G    ++ + T  G  +++  + V ++  + +   ++ + TF
Sbjct: 866  LTLTM--FDMLKT--SYRGDVMAKDLL-THVGQTVKMVGLYVCEKTVRMKNQKKMWFGTF 920

Query: 1021 SEPAKE-YEANFFP 1033
             +     ++   FP
Sbjct: 921  LDVHGNFFDTTHFP 934


>gi|167630340|ref|YP_001680839.1| DNA polymerase iii, alpha subunit, gram-positive type [Heliobacterium
            modesticaldum Ice1]
 gi|167593080|gb|ABZ84828.1| DNA polymerase iii, alpha subunit, gram-positive type [Heliobacterium
            modesticaldum Ice1]
          Length = 1245

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 190/974 (19%), Positives = 356/974 (36%), Gaps = 170/974 (17%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  H+  S ++G +S  +++ + A    PAIAITD   + +  E  + +    I+ I 
Sbjct: 342  VELHAHTKMSSMDGLVSAKDLVARAAYWGHPAIAITDHGVVQAFPEAFEASRKLKIKVIY 401

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +  +       + K+       I++LV    G + L +L+++ +L +  ++  RI
Sbjct: 402  GVEGYLVEEMPAPNGEKLKS-----WHIIILVKNMTGLKNLYKLITKSHL-EYFERRPRI 455

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-----FGDRLYV-- 184
                L+E   EGLI+ +   +G +  A    +S    KR+  F         G+ L++  
Sbjct: 456  PRKILEE-HREGLILGSACEAGELFSAMRKGASDDDLKRIAAFYDYVEIQPIGNNLFLYK 514

Query: 185  -NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                      R    + +++A     P+VAT +  FL   D     +LMA          
Sbjct: 515  KGEVPSEEALRDLNRRALRIADEVGKPIVATGDVHFLEPRDECYRRILMAGKGFADADD- 573

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECD 301
                     YL+   EM++ F  L EA      I      + +++   PI   F     D
Sbjct: 574  -----QAPLYLRTTDEMLAEFHYLGEADAKRCVIDNPRLIADMVEEIKPIPDEFFPPIID 628

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                  E+++R     G+   L    +      +  R+R+D EL+ I    FS  +LI  
Sbjct: 629  G----AEDQIREMT-EGMAAELYGDPL-----PEVVRKRVDKELHSIISNGFSVLYLIAH 678

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------- 399
              ++ +  +   VG  RGS   S+ A    IT+++PL                       
Sbjct: 679  KLVKKSNDDGYLVG-SRGSVGSSLVATFTGITEVNPLPPHYRCGHCKHSEFIMDGSIGCG 737

Query: 400  -------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  +   +PD D++F  + +    ++ +  +G 
Sbjct: 738  ADLPDKNCPRCGQLLIKDGHDIPFETFLGFEGDKVPDIDLNFSGEYQPRAHKFTEELFGK 797

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            + V +  T  ++  + A   V   L           K IP   A                
Sbjct: 798  DYVFRAGTIATIAERTAYGFVKNYLDE---------KKIPVRSA---------------- 832

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYR---DVRSDLPV 555
                      L  +     G+ R    H  G+++  R   +    P+ R   D +S+   
Sbjct: 833  ---------ELSRLVSGCTGVKRTTGQHPGGLMVVPRYGDIHDFTPLQRPADDTKSETIT 883

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T F+   I  + L+K D LG    T+++   D        +     P DD +T  L  + 
Sbjct: 884  THFDYHSI-SSRLVKLDILGHDDPTVIKMLEDLTGVNAKGI-----PLDDAKTMSLFCST 937

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   +         G+     + +  ++   +P    ++V  +   +G +  + + 
Sbjct: 938  EALGVTPEQIRSNTGTY-GIPEFGTKFVRQMLEDTKPKTFSDLVRISGFSHGTDVWLNNA 996

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
              LI   + +T   I  ++ +M I  +  G    +A  +   + K    + D        
Sbjct: 997  QDLIKSGICKTGEAISTRDDIM-IYLMYRGLPPKKAFSIMEGVRKGKGVKADD------- 1048

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               +  + +      +    K   Y F K+HA AY  ++++ AW K +YP  F A+  T+
Sbjct: 1049 ---EQLMRENKVPEWYIESCKKIKYMFPKAHAVAYVTMAFRIAWFKVYYPEAFYASFFTV 1105

Query: 795  EMDNVEK---------IKKFCQDARQFNIQIMPPSVN----------------------- 822
              D  +          +++  ++  +   +      N                       
Sbjct: 1106 RADEFDADLICQGSAHVRRTIEEIERKGNEATAKEKNLQTILELALEMYERGIHLQRVNL 1165

Query: 823  --TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
              +    F +    +   + ++ GVG T A++IM A  + PF S+ED   R    ++++ 
Sbjct: 1166 DRSHATKFIIEPEGLLPPIGSLPGVGATAAQNIMAAREEGPFSSIEDLRVR---SRVSKT 1222

Query: 881  VLESLVFAGALDCF 894
            V+E+L   G LD  
Sbjct: 1223 VIEALQKHGTLDGM 1236


>gi|221046767|pdb|3F2B|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
            With Dna, Dgtp, Mg And Zn
 gi|221046770|pdb|3F2C|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
            With Dna, Dgtp And Mn
 gi|221046775|pdb|3F2D|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
            With Dna, Dgtp, Mn And Zn
          Length = 1041

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 193/1000 (19%), Positives = 350/1000 (35%), Gaps = 195/1000 (19%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S ++   S+  ++++      PAIA+TD   + S  E    A   G++ I 
Sbjct: 117  VELHLHTPMSQMDAVTSVTKLIEQAKKWGHPAIAVTDHAVVQSFPEAYSAAKKHGMKVIY 176

Query: 72   GCQLDIDMQD---NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            G + +I           T++          + LL     G + L +LVS  ++     + 
Sbjct: 177  GLEANIVDDGVPIAYNETHRRLGSGSGPFHVTLLAQNETGLKNLFKLVSLSHI-QYFHRV 235

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY--- 183
             RI  S L +   +GL++ +G   G +       + +  E     +   ++    +Y   
Sbjct: 236  PRIPRSVLVK-HRDGLLVGSGCDKGELFDNLIQKAPEEVEDIARFYDFLEVHPPDVYKPL 294

Query: 184  VNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + +   +  +  +     +V L    ++P+VAT N  +L+ ED     +L+        +
Sbjct: 295  IEMDYVKDEEMIKNIIRSIVALGEKLDIPVVATGNVHYLNPEDKIYRKILIHSQGG---A 351

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKE 299
                    PD Y +  +EM+  FS L   +A E  V+  ++ + ++    PI        
Sbjct: 352  NPLNRHELPDVYFRTTNEMLDCFSFLGPEKAKEIVVDNTQKIASLIGDVKPIKDELYTPR 411

Query: 300  CDDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             +   +E  E +  R K + G                +   +RL+ EL  I    F+  +
Sbjct: 412  IEGADEEIREMSYRRAKEIYG------------DPLPKLVEERLEKELKSIIGHGFAVIY 459

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 460  LISHKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPNCKHSEFFNDGS 518

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 519  VGSGFDLPDKNCPRCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 578

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V                            +A A D 
Sbjct: 579  LFGEDNVYRAGTIGTVADKTAYGFV----------------------------KAYASDH 610

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRS 551
                  L    +DRL   +    G+ R    H  GI++      +    P+     D  S
Sbjct: 611  NLE---LRGAEIDRL---AAGCTGVKRTTGQHPGGIIVVPDYMEIYDFTPIQYPADDTSS 664

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD +   +
Sbjct: 665  EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPDVMGI 718

Query: 612  LTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
             ++               GT+GI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 719  FSSTEPLGVTPEQIMCNVGTIGIPEFGTRFVRQMLEETRPKTFSELVQISGLSHGTDVWL 778

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
                           +   LI         VI  ++ +M +  +  G   S A  +  ++
Sbjct: 779  G--------------NAQELIQNGTCTLSEVIGCRDDIM-VYLIYRGLEPSLAFKIMESV 823

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K      + + E       +  I             K   Y F K+HAAAY +++ + A
Sbjct: 824  RKGKGLTPEFEAEMRKHDVPEWYID----------SCKKIKYMFPKAHAAAYVLMAVRIA 873

Query: 778  WMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS-------- 820
            + K H+P+ + A+  T+  ++ +          I+K  ++     IQ             
Sbjct: 874  YFKVHHPLLYYASYFTVRAEDFDLDAMIKGSAAIRKRIEEINAKGIQATAKEKSLLTVLE 933

Query: 821  -----------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
                               +   +F +  N +     AI G+GT  A+ I+ A  +  F 
Sbjct: 934  VALEMCERGFSFKNIDLYRSQATEFVIDGNSLIPPFNAIPGLGTNVAQAIVRAREEGEFL 993

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL 902
            S ED   R    K     LES    G LD    ++++ L 
Sbjct: 994  SKEDLQQRGKLSKTLLEYLES---RGCLDSLPDHNQLSLF 1030


>gi|88803783|ref|ZP_01119306.1| DNA polymerase III alpha subunit [Polaribacter irgensii 23-P]
 gi|88780311|gb|EAR11493.1| DNA polymerase III alpha subunit [Polaribacter irgensii 23-P]
          Length = 985

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 256/1038 (24%), Positives = 432/1038 (41%), Gaps = 118/1038 (11%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L  HS YSL  G  S   +L+   A+   A+A+TD NN  + + F Q+A    I P++G
Sbjct: 2    YLNCHSYYSLRYGTFSEVALLELAVANNINALALTDINNTSACMNFIQQAKKYDIHPVVG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                                  T    V L     G+Q +   +S  +L  +        
Sbjct: 62   VDFRN----------------GTSQQFVALAENNTGFQNINRYLS-SFLTSK-------- 96

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
                           T   S P      F      EK L      F +  ++ +      
Sbjct: 97   ---------------TAIPSTPTPLENVFIVYPF-EKVLELHLTSFAENEFIGISI-AEI 139

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPD 251
            ++ R S +      +E  +V        S+ D+ AH +L A+ ++T++S+          
Sbjct: 140  NKLRFSYL----KKYEDKIVIQQQVTIRSKNDFNAHRLLRAIDNNTLLSKLPTTEECLET 195

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
              +   + +   F + P  L+NT  + ++C            + +        +E+   L
Sbjct: 196  ERMHTATALEDSFKEFPFILDNTKALLKKCRVHFGYDTARTNQNLNVY-RGSFEEDCTLL 254

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                   L  R           +     RL  EL VI  +KF  +FLI  D I +AKKNN
Sbjct: 255  LQLCADKLHKRYP-------APSLKVHARLKKELKVIVELKFVSFFLINYDIICYAKKNN 307

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
                 GRGSGA S+ AY L ITD+DP+   L FERF+NP R S PDFDIDF    R  + 
Sbjct: 308  F-FHVGRGSGANSIVAYILGITDVDPVELDLYFERFINPFRASPPDFDIDFSWKDRATMT 366

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +Y+ +++  + VA + T+ + + +A +R++G+   +P  ++D+L +              
Sbjct: 367  QYIFDRF--DHVALLATYNTFKYRAVIRELGKVFGLPKEEIDKLSRG------------- 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
             A + +       D   + +L+  + +EG   + S H+AG++I ++P+          + 
Sbjct: 412  -AREPKV------DGIANLVLKYGKLIEGFPNYVSVHSAGVLILNKPIHYYSATSMPPK- 463

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFD----DH 606
              P  QF+M   +  G+ KFD LG + L  ++ +L  + +      ++ +   +    D 
Sbjct: 464  GFPTVQFDMYIADDVGVFKFDILGQRGLAKIKDALQIIKENHPGAPEIDITAIEAFKKDK 523

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
                LL   G +G + +ES  MR  ++ +Q      ++A  S+ RPG   + +   Y  R
Sbjct: 524  NINMLLKNGGAIGAYYVESPAMRGLMQKLQTQDYLGLVAASSIIRPGVSGSGMKEEYIKR 583

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-- 722
                EK    HP++  ++ ET GV++YQE VM++A   +  SL EADVLRR M  K +  
Sbjct: 584  HRFPEKRKEAHPILLQIMPETYGVMVYQEDVMKVANQFADLSLGEADVLRRGMSGKYRSI 643

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EE    + +FIS   K G +  +   ++  +  FA Y F K H+A+YAV SYQ+ ++K +
Sbjct: 644  EEFKAVEAKFISNCRKKGHADPLIFEVWNQIKSFAGYAFAKGHSASYAVESYQSLFLKCY 703

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP+EF+ A +            +  +A+     I  P +NT      V    IY     +
Sbjct: 704  YPIEFMTAVLN-NGGGFYTAAHYIHEAKMCGATIALPCINTSDHANIVRGKTIYLGFGYL 762

Query: 843  KGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K +     +  + E      F S+EDF +R+    ++   L  L+   A       +  L
Sbjct: 763  KNLEHLLIQRFLTERQLHGCFLSMEDFIARI---AVSIEQLTVLIRIDAFRFTNKPKTTL 819

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L   +   K      K      E +F      F     + K    +      +E  +LGF
Sbjct: 820  LW--EATFKLNARTSKEVQT-QEKLFRTPHQNFE----IPKLHT-HWLEDVYDEMELLGF 871

Query: 962  ----YFSGHPL--DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                YFS   L  D + P ++   +  + +         + L   +V+ +  KT +G  +
Sbjct: 872  TIHDYFS---LVTDQFHPHIKAKQMAEFAD-------KKVVLYGQLVATRFNKTSQGKLM 921

Query: 1016 GWVTFSEPAKE-YEANFF 1032
               TF +     ++A  F
Sbjct: 922  RLTTFIDADGNYFDAVHF 939


>gi|254392772|ref|ZP_05007944.1| DNA polymerase III [Streptomyces clavuligerus ATCC 27064]
 gi|197706431|gb|EDY52243.1| DNA polymerase III [Streptomyces clavuligerus ATCC 27064]
          Length = 921

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 220/839 (26%), Positives = 379/839 (45%), Gaps = 49/839 (5%)

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA------- 270
             +   E +   DVL A      V ++       + YLK+  EM  + + +  A       
Sbjct: 2    RYERREQHRLADVLDAARLLRPVPRRGVLD-PGERYLKSGPEMAEVAARVAAAAGAPAAR 60

Query: 271  ----LENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
                L  T E+A +C         +  P F E +      E  + +R      L  R   
Sbjct: 61   GRRLLGETAEVAAQCEVDPVRDLGLGRPHFPEPQVVGAGAEPGDGMRL-----LRRRCEA 115

Query: 326  GAIAKGYHAQDY-RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            G   +G         +L  EL VI ++ +  YFL VA  +   +   I V   RGSGAGS
Sbjct: 116  GMTVRGLDRDARALDQLHHELAVIEQLGYEAYFLAVAQVVADTRAMGIRVA-ARGSGAGS 174

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            +  ++L I   +PL   LLFERFL+  R ++PD D+D    RR EV   +  ++G ERVA
Sbjct: 175  MVNHSLFIATANPLEHRLLFERFLSARRRTLPDIDLDVESHRRLEVYDRIFERFGSERVA 234

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
                  + +A+ ALRD G AL +    VDR+ K  P+  A  +   A+A+    R+    
Sbjct: 235  VTGMPETYRARHALRDTGLALGIRPRTVDRIAKSFPHIRACDIR-SALAELPELRQLARH 293

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
                  L E+++ L+ L R  + H  G+++    L   +P+        P+ Q +   +E
Sbjct: 294  AGRFGPLWELAEGLDALPRGYAMHPCGVILSSTSLLDRLPVQ-PTPGGYPMVQADKHDVE 352

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA----QRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
              GL+K D LG++  + +  ++  +     +         +   D +T+ L+     LG 
Sbjct: 353  DMGLVKLDVLGVRMQSAMAHAVAEIRRTTGRHIDLDSPDHVDLGDEQTFALIRRGQVLGC 412

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLI 678
            FQ+ES G++  +  +QP  ++DIIA +SL+RPGP+   +   +   ++G E     HP +
Sbjct: 413  FQIESPGVQDLIARLQPRHLQDIIADISLFRPGPVKGGMPARFIAARHGAETPRYPHPDL 472

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
             P++ +T GV+I+ EQ+M+I ++L+G   + ADV RRA+     E + + +  F   A++
Sbjct: 473  VPIMDDTYGVVIWHEQIMEILRVLTGCDRAAADVARRALA--DTERLPRVEAWFRRCAAE 530

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             G +  +   +++++ +F  YGF ++HA A+AV + Q+AW+KTHYP  F A  +  +   
Sbjct: 531  RGYTPAVIGEVWDIIKEFGAYGFCRAHAVAFAVPAVQSAWLKTHYPAAFYAGLLQHDPG- 589

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPC----VDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
            +   +   QDA+QF + I+P  +N       V+       +  +L+ I+G+ T  +  I 
Sbjct: 590  MWAPRVLVQDAKQFGVTILPVDINHSRSAHSVEQTADGWGVRLALSTIRGITTAESARIE 649

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQSLDNIQKYAQ 913
             A   +P+  L+D   R    + +  + + L+  GAL   G  +R  LL     + + A+
Sbjct: 650  AA---QPYTGLQDLWLRA---RPSLPLAQRLITIGALGPQGRLTRRDLLLQATELHRSAR 703

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
               +   +    +     G  +                   E  VL    S H L+ +  
Sbjct: 704  --NRTTADGQLPL-----GDETHAGAPAGLPEMTGRDVLNAEIDVLSIDVSRHLLEHHHR 756

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +L ++G        A  RG  + +A +  S Q      G R+ +VT  + +   +  FF
Sbjct: 757  LLAELGATDAHHLQAMHRGQQVLVAGVRASTQTPPVPSGKRVIFVTLEDGSGLVDVAFF 815


>gi|256422251|ref|YP_003122904.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
 gi|256037159|gb|ACU60703.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
          Length = 980

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 229/1041 (21%), Positives = 437/1041 (41%), Gaps = 126/1041 (12%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L   + +S   G      ++   +      +A+T+ NN     +F      AGI+P+ G
Sbjct: 2    YLNCKTYFSYRYGTFPHELLVLTASELAVKTMALTNINNTSDIWDFVSACKRAGIKPVAG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             ++  +                     +LL    EG+ ++   +S               
Sbjct: 62   VEIRNE----------------DTLCYLLLSRNNEGFFQINRFLS--------------- 90

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF---KKLFGDRLYVNLQRH 189
                       LI           +A F +  ++     + +   K+       + +  +
Sbjct: 91   ---------THLIA----------KAPFPDRVELGADVFVIYPFNKEWLQSEPLLTVNEY 131

Query: 190  RGYDRYRESQVVQLA-YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             G      +++  +        L+  +   F  +  Y  H +L A+  + ++S+++    
Sbjct: 132  MGVQTTEVNKLYGVDMQQWGSRLLMRHPVTFQDKVHYNVHRLLRAIDKNIILSKQEDTHK 191

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              +H      + ++  F   P+ + NT  +  +CS  +        +      +D +   
Sbjct: 192  AGEHETFMPPATLLLAFEAYPQIIINTFLLMEKCSLDMDYEEDKNKKHASASKEDDR--- 248

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L   A  GL  R        G      R+R+  EL +I  + F+ YFLI  + +Q+A
Sbjct: 249  -QLLEKLATDGLLYRY-------GKTNTVARERVLKELKIINDLNFNAYFLITWEILQYA 300

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +        GRGSGA S+ AY + ITD+DP+   L FERFLNP R S PDFDIDF    R
Sbjct: 301  RSRGF-FHVGRGSGANSIVAYCMQITDVDPIELDLYFERFLNPYRTSPPDFDIDFSWVDR 359

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D++I +V  KYG E VA +  + + Q KA +R++G+   +P +++D L            
Sbjct: 360  DDIIDFVFKKYGKEHVALLGMYTTFQYKATVRELGKVYGLPKTEIDLLA----------- 408

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                   + R +     D    ++L  S  ++    H S H  G++I + P+        
Sbjct: 409  -------EGRLQS---DDKVHAQILRYSDLIKDFPNHLSIHPGGMLISENPIHYYTATDL 458

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF--D 604
              +     TQ +M   E   L KFD L  + L  ++ ++D + + RG+ +D+  +     
Sbjct: 459  PPK-GFYTTQIDMFVAENISLFKFDILSQRGLGHIKDTVDLVRKTRGIAIDIHDVELFKQ 517

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
            D      + +  T+G F +ES  MRQ L+ ++      ++A  S+ RPG   + ++  Y 
Sbjct: 518  DKRVAQQIRSADTIGCFYIESPSMRQLLKKLRCSDYLTLVAASSIIRPGVGQSGMMQEYI 577

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R +  +K   +HP +  +L+ET GV++YQE V+++A    G  ++E+D+LRRAM  K +
Sbjct: 578  YRYHNPDKFEYLHPKMKELLQETYGVMVYQEDVIKVAHHFGGLDMAESDILRRAMSGKYR 637

Query: 723  E--EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               +M + +E+F       G    I+  ++  ++ FA Y F+K+H+A++AV SYQ+ ++K
Sbjct: 638  GTKQMQRLEEQFFLNCKARGYDPGISREVWRQISSFAGYSFSKAHSASFAVESYQSLYLK 697

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
            T+YPVEF+ A +            + Q   +    +  P +N       + ++ +Y    
Sbjct: 698  TYYPVEFMVAVIN-NFGGFYNRALYFQQLIKHGATVYNPCINNSDYLTSIKNDIVYVGFI 756

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +       I+E    +  +  L+DF  R    ++    L +L+   AL   G ++ 
Sbjct: 757  HIKDLERALMEKILEERDRNGAYLHLQDFIERT---QVPPEQLNTLIKVNALRFTGKTKG 813

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR-FENEQRV 958
            +LL   + +    Q     R    +++F         +I+ +  +++ + ++    +  +
Sbjct: 814  ELLWEANTL----QKTNTRRIPAGQSLF------QEPEISFQLPALKQNRLKDMMQDIEL 863

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRG---NNIRLAAMVVSKQQKKTRKGSR 1014
            LGF          + +   +    Y+    A I G     +     ++  +   T+K   
Sbjct: 864  LGFTL--------ENMFELVDADPYQHKLAADIPGCVHQTVTCLVYLICTKDTYTKKNKE 915

Query: 1015 -IGWVTFSEPAKE-YEANFFP 1033
             + + T+ +   +  ++  FP
Sbjct: 916  VMHFGTWLDVKGDWVDSVHFP 936


>gi|305665445|ref|YP_003861732.1| DNA polymerase III subunit alpha [Maribacter sp. HTCC2170]
 gi|88710200|gb|EAR02432.1| DNA polymerase III alpha subunit [Maribacter sp. HTCC2170]
          Length = 983

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 254/1014 (25%), Positives = 427/1014 (42%), Gaps = 114/1014 (11%)

Query: 36   IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
               +    + +TD NN  + L F ++A    ++PI+G      +                
Sbjct: 2    AKENHVTQLVLTDINNTSAGLNFVRRAPEYDVRPILGIDFRNGVD--------------- 46

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
                V +    EGY  L   +S               L  +        I+         
Sbjct: 47   -QCYVGIAKNNEGYLELNNFLSE-------HLHKEEDLPAIAPRLQHTCIIYP------- 91

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATN 215
                        EK LL  +  F D  Y+ +         R     +L+   +  LV   
Sbjct: 92   -----------FEKVLLNNQVSFADNEYIGI----SISDLRRLPFSRLSKLED-KLVVQQ 135

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENT 274
               F ++ D+ AH +L A+  + ++S+ D+      D  +     + + FS+    LENT
Sbjct: 136  PVTFRTKGDFNAHRLLRAIDKNMLLSKLDKTEEAKEDEKMFPIQNLAAAFSEYSFILENT 195

Query: 275  VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
             ++   CS          P+ + K  +  ++E+E  L      GL  R   G        
Sbjct: 196  EKLMNACSIHFDFSKERQPQNL-KTYNKTKEEDETMLEGLCQKGLPYRYPNGG------- 247

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
                QRL  EL +I  M F  YFLI  D + +A+K       GRGSGA S+ AY L ITD
Sbjct: 248  DGIIQRLQKELKLIKGMGFVSYFLINWDIVSYAQKQGFFY-VGRGSGANSIVAYLLRITD 306

Query: 395  IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
            +DP+   L FERF+N  R + PDFDIDF    R ++ +Y+ +++  E VA + T+ + + 
Sbjct: 307  VDPMELDLYFERFINLYRANPPDFDIDFSHRDRPKITQYIFDRF--EHVALLGTYVTFKE 364

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K  +R++G+   +P S++D L                  D SR       D     +++ 
Sbjct: 365  KGVVRELGKVFGLPKSEIDFLS-------------GGRYDISRL------DEVSQLVVKY 405

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
             + ++ +  + S HA GI+I +RPL      +   +     T F+M   E  GL KFD L
Sbjct: 406  GRLIKNMPNYLSIHAGGILISERPLHYFSATHLPPK-GFATTMFDMVIAEDVGLYKFDIL 464

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPF-------DDHETYHLLTTKGTLGIFQLESSG 627
            G + L  +++++D + +     D S I         +D    +L+ T   +G F +ES  
Sbjct: 465  GQRGLAKIKETMD-ILEHTRPDDFSKIDIHNINKFKEDPNVNNLIKTAQCMGCFYVESPA 523

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGK-EKIVSIHPLIDPMLKE 684
            MR  L+ ++ D    ++A  S+ RPG   + ++  Y  R           HP++  ++ E
Sbjct: 524  MRMLLKKLEVDNYLGLVAASSIIRPGVSKSGMMREYILRHRNPGRDKEKGHPVMLDIMPE 583

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK--IKEEMDKQKERFISGASKNGIS 742
            T GV++YQE V+++A   +G  L EADVLRR M  K   +EE  K +E+FI    K G  
Sbjct: 584  TYGVMVYQEDVIKVAHHFAGLDLGEADVLRRGMSGKFRSREEFQKVREKFIENCRKKGED 643

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              I   ++  +A FA Y F K H+A+YAV SYQT +++ +YP+E++ A +        + 
Sbjct: 644  DKIIFEVWGQIASFAGYAFAKGHSASYAVESYQTLFLRAYYPLEYMVAVLN-NGGGFYRP 702

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKP 861
            + +  +AR     I  P VN       +    I+     ++ +    A  I++    +  
Sbjct: 703  EFYVHEARMLGATIHSPCVNRSLNRNVIYGKGIFLGFGYLRELEHRVAERILKDRKVNGA 762

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + SLEDF  RV        +L   +   A    G ++ QLL       K   ++ KN   
Sbjct: 763  YGSLEDFLDRVFISIEQASIL---IRIDAFRFTGVNKHQLLW------KAHLFLNKNVKI 813

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGI 980
             H  +F  +   F     + +    +  + F     +LGF     P ++  +P      +
Sbjct: 814  DHPKLFPPKHQDF----KIPQLYTTDLEMAFTQ-LELLGFCLCS-PFELLVEPPKNNRCV 867

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE-YEANFFP 1033
            K  E  +      +I +   +V+ ++  T  G ++ + TF +   E ++   FP
Sbjct: 868  KDLERHL----NRHIDIYGYLVTVKKTSTHNGKQMYFATFVDQQGEVFDTVLFP 917


>gi|301633233|gb|ADK86787.1| putative DNA polymerase III, alpha subunit [Mycoplasma pneumoniae
           FH]
          Length = 872

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 274/895 (30%), Positives = 421/895 (47%), Gaps = 68/895 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV+L  +S Y+ L   LS   ++D    DQQ A+ +TD  NLF A EF      A I+P+
Sbjct: 2   FVNLHTNSYYNFLNSTLSPQKLVDLAVQDQQVAVCLTDP-NLFGATEFFLACQKAHIKPL 60

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG  + +               +    +++++  T  GYQ L+ L     + DQ      
Sbjct: 61  IGLSVTV-------------RHYEQNVNLLVIAQTNRGYQNLMCL---ALVKDQ------ 98

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                L+      ++++   +   + R    N   +A      + K+   +  V  Q   
Sbjct: 99  -PDLQLEPFLDGNVVII--CTQTEL-RLNTANPVYLAHGLSGRYPKIAVTQKPVKCQNTN 154

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             D      + Q++           NS      +++    L  +            +   
Sbjct: 155 -KDLTLLLTLKQISQI---------NSEHFQPLEWKLSRSLNEIQL-----DPPLLQQLR 199

Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                ++     IFS+  E L N  ++  +  + L                 +   +   
Sbjct: 200 HQPFLSQKAAQQIFSE--EELGNLQKLVEQSQWDLTKLK--------ASSLQVSHNDAQM 249

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           L  +    L   L    +    + Q Y +RL  EL +I  + F+GYFL+V+D +Q+A  N
Sbjct: 250 LSEQCQLALTEFLK---LNPQLNKQLYEERLAKELEIINSLHFAGYFLVVSDLVQFAHNN 306

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
           +I +GPGRGS  GS+ A+ L IT IDP+  +L+FERF++  R  +PD DID  + +RD V
Sbjct: 307 DILIGPGRGSAVGSLVAFLLKITQIDPVANNLIFERFISRHRQGLPDIDIDIMETKRDLV 366

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
           I YV  KYG E+ AQI+TF   + ++ALRDVG+  +      D L KL  +     + + 
Sbjct: 367 IDYVMQKYGREQCAQIVTFQKFKTRSALRDVGKVFKHIEGAEDLLGKLPKDKSLLELDVN 426

Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            + D       +L+  S   L E+++++    R  S HA+G+VI   PL   +P+     
Sbjct: 427 GVTDPV----LQLSLKSFRLLWEVAREIINFPRQPSIHASGVVIVTEPLITTIPLMVGNN 482

Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD--LSLIPFDDHET 608
           ++  VTQ +M W+E   L KFD LGL  LT++ + +  +  + V V   L  IP DD  T
Sbjct: 483 NNY-VTQVSMDWLEWYNLNKFDLLGLINLTMIHEVVQAVKPKEVSVQQFLQQIPLDDEAT 541

Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
           +  LT + TLG+FQLES GM++ L+ ++P  + D+  +++LYRPGP DNI  +   +N  
Sbjct: 542 FTNLTNQATLGVFQLESFGMKKVLKQIKPHNLHDLAIVLALYRPGPQDNINTFIANRNLG 601

Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
                I P I P+LKET GV+I+QEQV+ IA+ ++ YSL  AD  RRA+ KK  + +   
Sbjct: 602 FDTSDIDPRILPILKETYGVLIFQEQVINIAKTVANYSLETADSFRRAISKKNLQVIQDN 661

Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
              F  GA  N  S   A  IF  + +FA YGFN SHA  YA++SY TAW+KTHY  +F 
Sbjct: 662 MRSFYEGALANNFSLKAATTIFNYIQRFAGYGFNLSHALGYALLSYWTAWLKTHYFEQFN 721

Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
              +  E    EK K+   +      +I PP +N    DF V D ++Y     I G+G  
Sbjct: 722 LWWLNHEQGKKEKQKQLLNEFISSGYEICPPLINKAKSDFSVQDKKLYLGFKLINGIGDK 781

Query: 849 TA---RHIMEASADKPFDSLE---DFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            A    H+ E     P  SL    + C       L  + +  L  AG  +CF Y+
Sbjct: 782 QAHALEHVQEVLKQNPNLSLIATVNLCLSKTVGGLELKDITLLQQAGCFNCFNYT 836


>gi|13508117|ref|NP_110066.1| DNA polymerase III alpha subunit [Mycoplasma pneumoniae M129]
 gi|2494194|sp|P75404|DPO3A_MYCPN RecName: Full=DNA polymerase III subunit alpha
 gi|1674148|gb|AAB96107.1| DNA polymerase III alpha subunit [Mycoplasma pneumoniae M129]
          Length = 872

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 273/895 (30%), Positives = 419/895 (46%), Gaps = 68/895 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV+L  +S Y+ L   LS   ++D    DQQ A+ +TD  NLF A EF      A I+P+
Sbjct: 2   FVNLHTNSYYNFLNSTLSPQKLVDLAVQDQQVAVCLTDP-NLFGATEFFLACQKAHIKPL 60

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG  + +               +    +++++  T  GYQ L+ L     + DQ      
Sbjct: 61  IGLSVTV-------------RHYEQNVNLLVIAQTNRGYQNLMCL---ALVKDQ------ 98

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                L+      ++++   +   + R    N   +A      + K+   +  V  Q   
Sbjct: 99  -PDLQLEPFLDGNVVII--CTQTEL-RLNTANPVYLAHGLSGRYPKIAVTQKPVKCQNTN 154

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             D      + Q++           NS      +++    L  +            +   
Sbjct: 155 -KDLTLLLTLKQISQI---------NSEHFQPLEWKLSRSLNEIQL-----DPPLLQQLR 199

Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                ++     IFS+  E L N  ++  +  + L                 +   +   
Sbjct: 200 HQPFLSQKAAQQIFSE--EELGNLQKLVEQSQWDLTKLK--------ASSLQVSHNDAQM 249

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           L  +    L   L    +    + Q Y +RL  EL +I  + F+ YFL+V+D +Q+A  N
Sbjct: 250 LSEQCQLALTEFLK---LNPQLNKQLYEERLAKELEIINSLHFASYFLVVSDLVQFAHNN 306

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
           +I +GPGRGS  GS+ A+ L IT IDP+  +L+FERF++  R  +PD DID  + +RD V
Sbjct: 307 DILIGPGRGSAVGSLVAFLLKITQIDPVANNLIFERFISRHRQGLPDIDIDIMETKRDLV 366

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
           I YV  KYG E+ AQI+TF   + ++ALRDVG+         D L KL  +     + + 
Sbjct: 367 IDYVMQKYGREQCAQIVTFQKFKTRSALRDVGKVFNHIEGAEDLLGKLPKDKSLLELDVN 426

Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            + D       +L+  S   L E+++++    R  S HA+G+VI   PL   +P+     
Sbjct: 427 GVTDPV----LQLSLKSFRLLWEVAREIINFPRQPSIHASGVVIVTEPLITTIPLMVGNN 482

Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD--LSLIPFDDHET 608
           ++  VTQ +M W+E   L KFD LGL  LT++ + +  +  + V V   L  IP DD  T
Sbjct: 483 NNY-VTQVSMDWLEWYNLNKFDLLGLINLTMIHEVVQAVKPKEVSVQQFLQQIPLDDEAT 541

Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
           +  LT + TLG+FQLES GM++ L+ ++P  + D+  +++LYRPGP DNI  +   +N  
Sbjct: 542 FTNLTNQATLGVFQLESFGMKKVLKQIKPHNLHDLAIVLALYRPGPQDNINTFIANRNLG 601

Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
                I P I P+LKET GV+I+QEQV+ IA+ ++ YSL  AD  RRA+ KK  + +   
Sbjct: 602 FDTSDIDPRILPILKETYGVLIFQEQVINIAKTVANYSLETADSFRRAISKKNLQVIQDN 661

Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
              F  GA  N  S   A  IF  + +FA YGFN SHA  YA++SY TAW+KTHY  +F 
Sbjct: 662 MRSFYEGALANNFSLKAATTIFNYIQRFAGYGFNLSHALGYALLSYWTAWLKTHYFEQFN 721

Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
              +  E    EK K+   +      +I PP +N    DF V D ++Y     I G+G  
Sbjct: 722 LWWLNHEQGKKEKQKQLLNEFISSGYEICPPLINKAKSDFSVQDKKLYLGFKLINGIGDK 781

Query: 849 TA---RHIMEASADKPFDSLE---DFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            A    H+ E     P  SL    + C       L  + +  L  AG  +CF Y+
Sbjct: 782 QAHALEHVQEVLKQNPNLSLIATVNLCLSKTVGGLELKDITLLQQAGCFNCFNYT 836


>gi|148284147|ref|YP_001248237.1| DNA polymerase III alpha chain [Orientia tsutsugamushi str. Boryong]
 gi|146739586|emb|CAM79338.1| DNA polymerase III alpha chain [Orientia tsutsugamushi str. Boryong]
          Length = 1234

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 227/536 (42%), Positives = 337/536 (62%), Gaps = 14/536 (2%)

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
                 +  +++ + +LEGL+RH S HAAGIVIG + L   + +Y+D  SD+PV Q++MK+
Sbjct: 590  NRKAQIQDVIKTALELEGLHRHVSVHAAGIVIGRQNLIDTIALYKDKNSDIPVVQYSMKY 649

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            +E AGLIKFDFLGL+TLT++ K L+ L  + +  +++ + F+D  TY LL+   T+G+FQ
Sbjct: 650  LEAAGLIKFDFLGLQTLTIISKCLELLKNKNINFEINNLEFNDKLTYQLLSNGNTIGVFQ 709

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
             ESSGM+ AL+ ++PDCIED+IAL +LYRPGP+DN+  Y + K+G+ K   +H  ++P+L
Sbjct: 710  FESSGMQDALKRLKPDCIEDLIALGALYRPGPMDNLRTYIDCKHGRLKPNYLHSKLEPIL 769

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            KET G IIYQEQVM+IA++L+ Y+LS+AD LR+AM KKIK EM+ QK  FI+GA +NGIS
Sbjct: 770  KETYGTIIYQEQVMEIAKVLAKYTLSKADFLRQAMAKKIKSEMENQKVIFINGAIENGIS 829

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
            K  A +IF  + KFA YGFNKSHAA YAVISYQTA++K +YP EFL A + L++++ +KI
Sbjct: 830  KNQAESIFAEVEKFAGYGFNKSHAAIYAVISYQTAYLKANYPTEFLVACLNLDINDQDKI 889

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-K 860
              F Q+A+Q  I+++PP++N     F +  DN I ++L AIK V     + I+E      
Sbjct: 890  DLFIQEAKQLGIKVIPPNINKSKEYFSISADNAIIFALGAIKNVTPNIGKIIVEERLHRG 949

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG--YSRMQLLQSLDNIQKYAQWVEKN 918
             F ++ DF  R DS  ++R+V ESL++AG  D F    +R QL  S+D I  YA    KN
Sbjct: 950  EFKTILDFAVRTDSYSISRKVFESLIYAGCFDDFQQPVNRHQLFASIDRINNYASKHAKN 1009

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                  + F+    T  D   L   S  +   +   E  VLG + + +P+  Y+ +L K 
Sbjct: 1010 -----IHQFSFITSTVED--VLSPISEYSLHEKAMKEFEVLGSFLTCNPISPYESLLAKH 1062

Query: 979  GIKGYEESVATIR-GNN-IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            G+   +    T++ G+  +R+A +V  K  + + +G     +  S+     E   F
Sbjct: 1063 GVVNSKYLSTTLKSGSTAVRIAGIVQKKNSRMSPRGK-FNIIKLSDSCGNSEVKIF 1117



 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 213/505 (42%), Positives = 290/505 (57%), Gaps = 24/505 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL+V SSYSLLE  LS   IL     D+ PA+A+TD +NLF +LEF+  A   GIQPI
Sbjct: 5   FIHLRVQSSYSLLESTLSTQKILSLAQRDEMPAVALTDKSNLFGSLEFALAAAKEGIQPI 64

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G          L +   G+   P    I+L+     GYQ L++L S  Y+ +       
Sbjct: 65  HGII--------LNIQYYGQNDSPKYSEILLIAQNKAGYQNLLKLASFPYIKNDRTTINH 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           + L  L     EG+I+L+G   G I    F  +  +AE     FK +FG+R Y  + R  
Sbjct: 117 VTLDDLFTY-NEGIIVLSGYFYGIIGNLLFEKNFVLAENYAKKFKTIFGNRFYFEINRIT 175

Query: 191 GYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               Y  E   VQLA    +PLVATNN LF   E Y  H+VLM + +     + D+ ++ 
Sbjct: 176 SKQIYAIEKSYVQLAQKLNIPLVATNNILFDEGEKYATHEVLMKICN--PNIEIDKFKIN 233

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              Y K+++EM+  F DLP+A+ENTV + +R SF+L+   P+LP+F +        EE  
Sbjct: 234 NQCYFKSQNEMIETFWDLPQAIENTVYLTQRISFMLEAKKPLLPKFAKDAD-----EENK 288

Query: 310 ELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +R  +  GL  +L                + Y  RL++EL++I  M FSGYFLIV+DFI
Sbjct: 289 LIRQLSEEGLSQKLKLQFKNYSTAEFEDKKKIYFDRLNYELSIICSMNFSGYFLIVSDFI 348

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           +W+K+NNI V P RGSGA SV A+ L IT++DP+RF LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 349 KWSKENNISVNP-RGSGAASVVAWGLGITNLDPIRFGLLFERFLNPERVSMPDFDIDFCQ 407

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           +RR EVI YV+ KYG  +V QIITFG LQAKA ++DV RAL + Y+  + +  LIP +  
Sbjct: 408 ERRGEVINYVRRKYGEGKVGQIITFGKLQAKAVVKDVARALGLGYNYANYITSLIPFNAV 467

Query: 485 HPVSLQ-AIADDSRFREARLADPSV 508
            PV+LQ AI   +    A   +   
Sbjct: 468 RPVTLQEAIDKVNELNNAYTGNDLY 492


>gi|194246498|ref|YP_002004137.1| DNA polymerase III, alpha subunit [Candidatus Phytoplasma mali]
 gi|193806855|emb|CAP18284.1| DNA polymerase III, alpha subunit [Candidatus Phytoplasma mali]
          Length = 920

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 260/924 (28%), Positives = 445/924 (48%), Gaps = 82/924 (8%)

Query: 16  VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75
             S Y+LL+   SL +I+     +    ++++D  NL+  +EF +      I+P+IG ++
Sbjct: 7   CQSYYNLLKSLNSLEDIVKTAIKNNYDFVSLSDDENLYGMIEFLELCYKYKIKPVIGIKI 66

Query: 76  DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            +++    + +   K        I++      G   LI+L + +   +       + L  
Sbjct: 67  KLNLNKKNEFSKNNKK-----IEILVYAKNDIGINNLIKLSNIIKAEN-----KEVYLQD 116

Query: 136 LQEIGTEGLIMLTGGSSGPIDRAFFFN-----------SSQVAEKRLLTFKKLFGDRLYV 184
           LQE+  EG+ ++       +D+ FF             + ++ E  LL FK+      Y+
Sbjct: 117 LQEL-QEGIFVII----SILDKFFFEKVNNYFLSPTDANKEIIETILLNFKEK-IKNFYI 170

Query: 185 NL----------QRHRGYD--------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +            +   D           E  +   A   ++ ++ T+ + +L ++D  
Sbjct: 171 GISLQANINVDMIEYGINDLSIISPDLEQIEDNITYFADKLKIKILPTHKTKYLEQKDNI 230

Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            ++ L+ +       + ++     +     + E +  +   P+ + N  E+  + ++   
Sbjct: 231 VYEQLIKLNTDNKNEKNNQKL---NFSFLTKEEFILKYDKFPKLMLNLQELVSKINYSNN 287

Query: 287 VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
           +        + K   D+  +    L+ K     + ++      +     +Y +RL  EL 
Sbjct: 288 IFDDKF--HLPKINKDVLLDSSKILKKKTWENFKKKI---NTKENKIYSEYVKRLKHELK 342

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
           +I++MK+  YFLIVAD I +AKKNNI VGPGRGS  GS+  + L IT+IDPL++ L+FER
Sbjct: 343 IISQMKYEDYFLIVADIISYAKKNNILVGPGRGSSVGSLVCFCLDITEIDPLKYDLIFER 402

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           FLNP R  MPD D+DF  ++R+ VI YV+NKY +  VA +ITF        +  +   L 
Sbjct: 403 FLNPQRTKMPDIDLDFPDNQRENVINYVKNKYKNNNVANLITFLHFPMNFLIDKIANNL- 461

Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
             Y+  D L K I          +                    +  I+  +  + R   
Sbjct: 462 YGYTNTDNLKKKISKKTLDKTDYKG-----------------KEIERIANIIIKIPRTTG 504

Query: 527 THAAGIVIGDRPLSQLVPMY--RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
           TH +GI++    L + +P+    + +     TQF  K ++K GL K DFLG+K LTL+ K
Sbjct: 505 THISGIILSQENLLKTLPLQLNNNNKQTNYQTQFEDKNLQKIGLFKIDFLGIKALTLMNK 564

Query: 585 SLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            L  +      +++  IP DD +TY+LL  + T+ IFQLES+  +  L+ +QP    D+I
Sbjct: 565 ILKKIKN----LEIKNIPLDDIKTYNLLKEQKTISIFQLESTTAKNVLKKIQPCKFSDLI 620

Query: 645 ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ++   RPG I+ I  Y   KN   K V +HPLI  +LK T GVIIYQEQ+MQI    + 
Sbjct: 621 DVLGFNRPGTINFINEYIRNKNTNIKKVFLHPLIHEILKPTHGVIIYQEQIMQIIIKFAN 680

Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
           Y+L EAD  R A+ KK +  +  +K  FI  + +NG S      I++ +  FA+YGFNKS
Sbjct: 681 YNLIEADNFRNAISKKDQYFLINEKNTFIKKSMENGNSIEDTNKIYDHIYNFANYGFNKS 740

Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMT--LEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           H+ AYA+I+Y+ +++KT+Y  EF    +    + ++ E    F ++ +     I P   N
Sbjct: 741 HSVAYALITYRMSYLKTNYQKEFNLVLLNQFAKNNDWEATNNFIKEIKTEMKFIKPNIFN 800

Query: 823 TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK---KLNR 879
           +      + + ++   L +IKGV     +++++    K F++ E+F  R+        N 
Sbjct: 801 SSNQYNVLSEKKLIIPLISIKGVDNNFYQNLIKEKEQKKFENYENFKQRLKISLNLNKNE 860

Query: 880 RVLESLVFAGALDCFGYSRMQLLQ 903
            +L++L+F+GALD FG +R  L +
Sbjct: 861 NLLDNLIFSGALDIFGLNRRTLYE 884


>gi|89889523|ref|ZP_01201034.1| DNA polymerase III alpha subunit [Flavobacteria bacterium BBFL7]
 gi|89517796|gb|EAS20452.1| DNA  polymerase III alpha subunit [Flavobacteria bacterium BBFL7]
          Length = 1040

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 243/1040 (23%), Positives = 440/1040 (42%), Gaps = 118/1040 (11%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            +L  H+ YSL  G  +   +++    +    I +TD NN  + L F +      +  ++G
Sbjct: 2    YLNNHTYYSLRYGTFNELELIELALKNDVHTIVLTDINNTSACLNFMRLCAQHQLHGVLG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                 + Q                   V +    EG+Q L   +S  +L ++      I 
Sbjct: 62   IDFRNEHQ----------------QQYVGIARNNEGFQELNLFLSH-HLENK------IP 98

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
                        I+            + FN     EK        F +  Y+ +      
Sbjct: 99   FPAQAPAFNNASII------------YPFNKVVELEKV------RFRESEYIGIST---- 136

Query: 193  DRYRESQVVQLAYTHELPL----VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247
                 + + +L +TH + +    V      F S+ D+ AH +L  +  + ++SQ  +  +
Sbjct: 137  -----TTLRKLPFTHYVKMLDKMVVLQTVSFRSKRDFNAHRLLRCIDLNILLSQLPESQQ 191

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                  + + S +   F + P  ++NT  +  +C          L     ++     KE 
Sbjct: 192  GNASDQMTSLSLLKKAFEEYPIIIQNTTRLLEQCHVNFNFENAQLN--ANQQVFTTSKEA 249

Query: 308  EN-ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +  +LR  A  G+E R                +R++ E+ ++ +  F  YFLI     ++
Sbjct: 250  DYLKLRKLAYDGIEHRYGDI-----KDMTVVIERIEKEIGIVNKKGFVAYFLINWRICEY 304

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+        GRGSGA S+ AY L IT++DP+   L FERF+N  R S PDFDIDF  D 
Sbjct: 305  ARSKGYFY-VGRGSGANSILAYLLQITEVDPIELDLYFERFINDYRTSPPDFDIDFSWDD 363

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+++ R++ N +  E VA + T+ + Q +A +R++G+   +P + +D L           
Sbjct: 364  REDITRFIFNTF--ENVALLATYNTFQYRAVVRELGKVFGLPKADIDMLT---------- 411

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                      RF++ +L D     +L+ S  ++G+  + S HA GI+I ++P+       
Sbjct: 412  --------TGRFQQDQL-DQMHQLVLKYSHLVKGMPNYTSIHAGGILITEKPIHYYSATS 462

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD-- 604
               +      QF+M   E AG+ KFD L  + L  ++ +++ +        ++ +  D  
Sbjct: 463  LPPK-GYRTVQFDMHIAEDAGIHKFDILAQRGLGKIRDTIEIIKYNQPDAIVANLHTDVK 521

Query: 605  ----DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                D E  ++++    +G F +ES  MR  L  +  +    ++A  S+ RPG   + ++
Sbjct: 522  NFMQDPEINNMISQAKCIGCFYIESPAMRMLLSKLATNDYIGLVAASSVIRPGVAQSGMM 581

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  R    EK    HP++  ++ ET G+++YQE V+++A   +   L+EADVLRR M 
Sbjct: 582  REFILRTRYPEKRKEAHPIMQEIMPETYGIMVYQEDVIKVAHYYAKLDLAEADVLRRGMS 641

Query: 719  KK--IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             K   +EE  K ++++       G        I+  +  FA Y F K H+A+YAV SYQ+
Sbjct: 642  GKYRSREEFQKVEQKYFQNCIDIGHDPEQTQEIWNQIKSFAGYAFAKGHSASYAVESYQS 701

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
             ++K ++P+E++ A++        + + +  +A++    I  P VN   +   +    IY
Sbjct: 702  LYLKKYFPLEYMVATLN-NGGGFYRPELYVHEAKKCGAIIESPCVNHSDIANIIKGTSIY 760

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               + +K +   T   ++EA   D  F SLEDF  RV    ++   L  L+   A    G
Sbjct: 761  LGYSYLKELEKKTMVRLIEARQHDGLFKSLEDFIDRVL---ISIDQLALLIRIDAFRFTG 817

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R +LL        + +  +  +      +F  E      + T+ +     + +    E
Sbjct: 818  KDRYELLWQ-----AHFKLDKSPQKYIQNKLFNPEYK----ETTIPQLH--TTVLEMAYE 866

Query: 956  Q-RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            Q  +LGF    H  D+           G  + +       I +   VV+ +   T KG R
Sbjct: 867  QIELLGFPLCSH-FDLLLE--PPQNNYGLAD-MKAHHNKMILMYGYVVNIKTTHTAKGKR 922

Query: 1015 IGWVTFSEPAKE-YEANFFP 1033
            + + TF +   + ++   FP
Sbjct: 923  MQFGTFLDINGDFFDTVMFP 942


>gi|189184300|ref|YP_001938085.1| DNA polymerase III alpha chain [Orientia tsutsugamushi str. Ikeda]
 gi|189181071|dbj|BAG40851.1| DNA polymerase III alpha chain [Orientia tsutsugamushi str. Ikeda]
          Length = 1234

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 225/536 (41%), Positives = 338/536 (63%), Gaps = 14/536 (2%)

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
                 +  +++ + +LEGL+RH S HAAGIVIG + L   + +Y+D  SD+PV Q++MK+
Sbjct: 590  NRKAQIQDVIKTALELEGLHRHVSVHAAGIVIGRQNLIDTIALYKDKNSDIPVVQYSMKY 649

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            +E AGLIKFDFLGL+TLT++ K L+ L  + +  +++ + F+D  TY LL+   T+G+FQ
Sbjct: 650  LEAAGLIKFDFLGLQTLTIISKCLELLKNKNINFEINNLEFNDKLTYQLLSNGNTIGVFQ 709

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
             ESSGM+ AL+ ++PDCIED+IAL +LYRPGP+DN+  Y + K+G+ +   +H  ++P+L
Sbjct: 710  FESSGMQDALKRLKPDCIEDLIALGALYRPGPMDNLRTYIDCKHGRLQPNYLHSKLEPIL 769

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            KET G IIYQEQVM+IA++L+ Y+LS+AD LR+AM KKIK EM+ QK  FI+GA +NGIS
Sbjct: 770  KETYGTIIYQEQVMEIARVLAKYTLSKADFLRQAMAKKIKSEMENQKVIFINGAIENGIS 829

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
            K  A +IF  + KFA YGFNKSHAA YAVISYQTA++K +YP EFL A + L++++ +KI
Sbjct: 830  KNQAESIFAEVEKFAGYGFNKSHAAIYAVISYQTAYLKANYPTEFLVACLNLDINDQDKI 889

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-K 860
              F Q+A+Q  I+++PP++N     F +  DN I ++L AIK V     + I+E      
Sbjct: 890  DLFIQEAKQLGIKVIPPNINKSKEYFSMSADNAIIFALGAIKNVTPNIGKIIVEERLHRG 949

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKN 918
             F ++ DF  R DS  ++R+V ESL++AG  D F    +R QL  S+D I  YA    K 
Sbjct: 950  EFKTILDFAVRADSYSISRKVFESLIYAGCFDDFQQQVNRHQLFASIDRINNYASKQAK- 1008

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                H + F+    T  D   L + S  +   +   E  VLG + + +P+  Y+ +L K 
Sbjct: 1009 ----HIHQFSFITSTVED--VLSQISEYSLHEKAMKEFEVLGSFLTCNPIAPYESLLAKH 1062

Query: 979  GIKGYEESVATIR-GNN-IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            G+   +    T++ G+  +++A +V  K  + + +G     +  S+     E   F
Sbjct: 1063 GVINSKYLSTTLKSGSTAVKIAGIVQKKNSRMSPRGK-FNIIKLSDSCGNSEVKIF 1117



 Score =  398 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 213/505 (42%), Positives = 289/505 (57%), Gaps = 24/505 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL+V SSYSLLE  LS   IL      + PA+A+TD +NLF +LEF+  A   GIQ I
Sbjct: 5   FIHLRVQSSYSLLESTLSTQKILSLAQRYEMPAVALTDKSNLFGSLEFALAAAKEGIQAI 64

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G          L +   G+   P    I+L+     GYQ L++L S  Y+ +       
Sbjct: 65  HGII--------LNIQYYGQNDSPKYSEILLIAQNKAGYQNLLKLASFPYIKNDRTTINH 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           + L  L     EG+I+L+G   G I    F  +  +AE     FK +FG+R Y  + R  
Sbjct: 117 VTLDDLFTY-NEGIIVLSGYFYGIIGNLLFEKNFVLAENYAKKFKTIFGNRFYFEINRIT 175

Query: 191 GYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               Y  E   VQLA    +PLVATNN LF   E Y  H+VLM + +     + D+ ++ 
Sbjct: 176 SKQIYAIEKSYVQLAQKLNIPLVATNNILFDEGEKYATHEVLMKICN--PNIEIDKFKIN 233

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              Y K+++EM+  F DLP+A++NTV +A+R SF+L+   P+LP+F +        EE  
Sbjct: 234 NQCYFKSQNEMIETFWDLPQAIKNTVYLAQRISFMLEAKKPLLPKFAKDAD-----EENK 288

Query: 310 ELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +R  +  GL  +L                + Y  RL++EL+VI  M FSGYFLIVADFI
Sbjct: 289 LIRQLSEEGLSQKLKLQFKNYSTAEFEDKKKIYFDRLNYELSVICSMNFSGYFLIVADFI 348

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           +W+K+NNI V P RGSGA SV A+ L IT++DP+RF LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 349 KWSKENNISVNP-RGSGAASVVAWGLGITNLDPIRFGLLFERFLNPERVSMPDFDIDFCQ 407

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           +RR EVI YV+ KYG  +V QIITFG LQAKA ++DV RAL + Y+  + +  LIP +  
Sbjct: 408 ERRGEVINYVRRKYGEGKVGQIITFGKLQAKAVVKDVARALGLGYNYANYITSLIPFNAV 467

Query: 485 HPVSLQ-AIADDSRFREARLADPSV 508
            PV+LQ AI   +    A   +   
Sbjct: 468 RPVTLQEAIDKVNELNNAYTGNDLY 492


>gi|121533720|ref|ZP_01665547.1| DNA polymerase III, alpha subunit [Thermosinus carboxydivorans Nor1]
 gi|121307711|gb|EAX48626.1| DNA polymerase III, alpha subunit [Thermosinus carboxydivorans Nor1]
          Length = 1221

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 197/987 (19%), Positives = 366/987 (37%), Gaps = 182/987 (18%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  H+  S ++  +S+  ++   A  + PAIAITD   + +  E  ++A  AGI+ I 
Sbjct: 323  VELHAHTRMSNMDAVVSVKQLIKTAAKWKHPAIAITDHGVVQAFPEAYEEAAKAGIKVIY 382

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +   D                 I++L   A G + L  LVS  +L     ++ RI
Sbjct: 383  GMEGYLFDDD-----------ITQARHIIILAKNAIGLRNLYRLVSLSHLK-FLHRTPRI 430

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVN 185
              + L+E   EGLI+ +   +G + +A    +S+    ++ +F      + +  +   V 
Sbjct: 431  PRTALEE-HREGLILGSACEAGELIQAILAGASEEELLKIASFYDYLEIQPIGNNAFLVR 489

Query: 186  LQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
              +    +  R    +V +L      P+VAT +  FL+ ED     +LM         Q 
Sbjct: 490  EGKVADDEGLRRLNLRVCELGEKLNKPVVATCDVHFLNPEDEVYRRILMTGQGFADADQ- 548

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                  P  Y +   EM+S F+ L   +A E  VE +RR S +++   PI       +  
Sbjct: 549  -----QPPLYFRTTDEMLSEFAYLGAEKAYEVVVENSRRISELIEHFKPIPDELYAPKIP 603

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              +++  +    +A+           +      +    RL +EL+ I    F+  +LI  
Sbjct: 604  GAEEQIRSMAYQRAIE----------LYGDPLPEIVASRLKYELDSIINNGFAVLYLIAH 653

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------- 398
              ++ +  +   VG  RGS   S  A    IT+++PL                       
Sbjct: 654  KLVKKSLDDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHWRCPACKHSEFITDGSYGSG 712

Query: 399  ------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + F  F+      +PD D++F  + +    +Y +  +G 
Sbjct: 713  FDLPDKHCPQCQTLMQKDGHDIPFAVFMGFHGDKVPDIDLNFSGEYQPIAHKYTEELFGR 772

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            + V +  T  ++  K A   V          V                          R 
Sbjct: 773  DNVFRAGTIATIADKTAYGFVKNYFADKGYAV--------------------------RN 806

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMY---RDVRSDLPV 555
            A +         ++     G+ R    H  GI++  R +      P+     D  S    
Sbjct: 807  AYIN--------KLVSGCTGVKRTTGQHPGGIMVVPRDMDVHHFTPIQYPADDKNSSTIT 858

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T F+   I  + L+K D LG    T+++   D        +D   IPFDD +T  L ++ 
Sbjct: 859  THFDYHSI-SSRLVKLDILGHDDPTVIKMLEDLTG-----IDAKQIPFDDAKTMSLFSST 912

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G      G+     + +  ++   +P     +V  +   +G +  + + 
Sbjct: 913  EALGLTP-EQLGTTVGTFGIPEFGTKFVRQMLEDTKPKTFSELVRISGFSHGTDVWLNNA 971

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +    I  ++ +M       L    +    + +R+  G K  E+++  + +
Sbjct: 972  QDLIKKGIAKLSEAISARDDIMVYLIQKGLEPQIAFKIMEGVRKGKGVK-PEDVEYMRSK 1030

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
                    G+ +    +  ++      Y F K+HA AY +++++ A+ K HYP+ F A+ 
Sbjct: 1031 --------GVPEWYIESCQKI-----KYMFPKAHAVAYVMMAFRIAYCKVHYPLAFYASY 1077

Query: 792  MTLEMDNVE-------------KIKKFCQ--------------------DARQFNIQIMP 818
             T+   + +             KI +F Q                    +         P
Sbjct: 1078 FTVRATDFDADLIIQGEAALRSKINEFEQKGNNLSAKEKSQLTIMEMALEMYLRGYIFHP 1137

Query: 819  PSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
              +       F + DN +   + +++GVG T AR+I++A  ++PF SL+D  +R    K 
Sbjct: 1138 VDIYRSDAAKFLIVDNGLLPPIGSLQGVGDTAARNIVQARKERPFSSLDDLRTRARVSKT 1197

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQS 904
                L++    G LD    +   +L +
Sbjct: 1198 VIDTLKA---HGCLDDLPETDQIMLFA 1221


>gi|239502677|ref|ZP_04661987.1| putative DNA polymerase III alpha subunit [Acinetobacter baumannii
           AB900]
          Length = 785

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 234/755 (30%), Positives = 377/755 (49%), Gaps = 55/755 (7%)

Query: 16  VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75
           V S +S+ +  L+++ I++        ++AI D  +L + ++FS KA  A I+P+ GC+L
Sbjct: 8   VQSDFSIGKSLLTVDKIVEAAKGLGYSSVAIVDDMSLHALVDFSNKATKANIKPVFGCRL 67

Query: 76  DIDMQDNLKMTNQGKTPFPTVPSIVL---LVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            +      +              +      V + +G + L +L++     +Q     R  
Sbjct: 68  RVYDDSKYRKPPASSGIAEKRNLMFCPKVYVKSEKGIKGLFKLLTDANSKEQYYYHSRTD 127

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
           L  L ++  E +++ TG   G              E+ L   K  FGD LY+        
Sbjct: 128 LDALCKL--EDVVVTTGDMYGLFSHPDH-------ERILKVLKARFGDDLYIEFSPINTP 178

Query: 193 DRYRESQVVQLAYTHE-LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTP 250
              R + +  LAY  E +  V T    +L  ED +  DVL A+A +T +    RP +   
Sbjct: 179 LFDRLNYLGYLAYEREKIKTVVTYPFNYLENEDADTLDVLSAIATNTQLDLHYRPIQYVK 238

Query: 251 DHYLKNR-----------SEMVSI-----FSDLPEALENTVEIARRCSFILQVHAPILPR 294
           D   K               M             E L+N  E+  +C +I +     LP+
Sbjct: 239 DFGFKEPKFILDHTKAAIQRMAKYERVNSAEAWKEGLKNISELVDKCQYIFEKQPVSLPK 298

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGA----IAKGYHAQDYRQRLDFELNVIAR 350
               E           L  K + G + R ++        K      Y+ RL +EL+++ +
Sbjct: 299 LSTDEFKT--------LCAKCLEGWKKRFSKEILGYKPTKAELDTVYKSRLGYELSILKK 350

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F  YFL+V D + W+K N + VGPGRGS  GS+ AY L ITD+DP+RF L+FERF+NP
Sbjct: 351 MGFESYFLLVEDLVMWSKNNGVIVGPGRGSVGGSLVAYLLGITDVDPIRFGLIFERFINP 410

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
           +R+ +PD D+DF    R +VI Y+  KYG + VA I  + +L + +ALRD GR   +  +
Sbjct: 411 ERLDLPDADLDFASSGRYKVIDYLVEKYGEDYVAGISNYSTLASASALRDTGRISGLNNT 470

Query: 471 QVDRLCKLIPNDPAHPVSLQAIADD-SRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
           Q+    KL+  +    + L   AD      + R   P    + + + KL G  +    HA
Sbjct: 471 QLSA-TKLVLKEHGTSLDLNTSADAVPELDKFRNEHPV---IWKHATKLAGTMKSFGQHA 526

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
           AGIV+   P+     +    +S  PV  ++ + +E  GLIK D LGL TL +L  + D++
Sbjct: 527 AGIVVAGEPIVNRAVLETRGKS--PVVNWDKRVVEDWGLIKMDLLGLATLDVLNIACDYV 584

Query: 590 AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM---QPDCIEDIIA 645
            +R  +++DL  IP DD +T   L    T+G+FQLESSGM+Q L+ +        +DI A
Sbjct: 585 KERHGIELDLLKIPLDDEKTMQALGRGETVGVFQLESSGMQQLLKNISNGGAVTFDDICA 644

Query: 646 LVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
           + +LYRPGP+D+ +   Y + + G +++   H +++P+L +T GV++YQEQ M +A+ L+
Sbjct: 645 VTALYRPGPMDSGMLDDYVDLRKGLKEVTYAHEVLEPVLSDTYGVVVYQEQTMALARKLA 704

Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
           G+S++E+D LR+A+GKK  ++M + K +FI GA  
Sbjct: 705 GFSMAESDHLRKAIGKKDLKKMAELKPKFIDGAKA 739


>gi|238019269|ref|ZP_04599695.1| hypothetical protein VEIDISOL_01133 [Veillonella dispar ATCC 17748]
 gi|237863968|gb|EEP65258.1| hypothetical protein VEIDISOL_01133 [Veillonella dispar ATCC 17748]
          Length = 1263

 Score =  506 bits (1302), Expect = e-140,   Method: Composition-based stats.
 Identities = 177/994 (17%), Positives = 350/994 (35%), Gaps = 180/994 (18%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             +  S V L +H+  S  +  +S+ ++   +     PA+AITD   + +  E        
Sbjct: 331  NRPDSRVELHLHTKMSDKDALVSVKDLFKTVKKWGHPAVAITDHGVVQAFPEAQALGKEL 390

Query: 66   GIQPIIGCQLD------IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            G++ I G +        +   + L +  + K        I+LL     G + L +++S  
Sbjct: 391  GVKVIYGVEGYLIDDEIVARDEELVVDKKKKKEKDKRYHIILLAKNMVGLRNLYKMISIS 450

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +L +  K   R+  S ++E   EG+I+ +   +G + ++    +++     + +F     
Sbjct: 451  HL-EHYKVRPRLPRSVIEE-HREGIIIGSACEAGELMQSIVRGATKEELLEIASFYD--- 505

Query: 180  DRLYVNLQRHRG----------YDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDY 225
               Y+ +Q H             D          V++L      P+ AT +  +L+ E+ 
Sbjct: 506  ---YLEIQPHTNNMFLVRKGLMPDEQALIDMNKTVIELGEALNKPVCATCDVHYLTPEEK 562

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSF 283
               ++++         +       PD +L+   EM++ F  L E  A E  V   R  + 
Sbjct: 563  IYREIMLTACGYPDADE------QPDLHLRTTDEMLASFPYLSEEKAYEVVVTNTRAIND 616

Query: 284  ILQVHAPILPRFIEK--ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
             ++   P+         E  D    E      KA+ G                +  ++RL
Sbjct: 617  SIEDIKPVPDGTYSPKIEGADEAFTEMCYRNAKAIYG------------DPLPRVVQERL 664

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-- 399
            D+EL+ I    +   + I    ++ +  +   VG  RGS   S  A    IT+++PL   
Sbjct: 665  DYELDCIISNGYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPH 723

Query: 400  ---------------------------------------FSLLFERFLNPDRMSMPDFDI 420
                                                     + F  FL  +   +PD D+
Sbjct: 724  YVCPNCKHSEFFEKGEYAGGFDLPRKDCPECGHALQTNGHDIPFAIFLGFEGDKVPDIDL 783

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + +  +Y +  +G + V +  T G++  K A   V +  ++             
Sbjct: 784  NFSGDYQAKAHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKKYAEI------------- 830

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                     + I   S F E             +++    +      H  GI++  R + 
Sbjct: 831  ---------RDIQARSGFFE------------HLAKGFTNVKNTTGQHPGGIMVCPRDMD 869

Query: 541  --QLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
                 P+        S +  T F+   IE   + K D LG    T+++   D        
Sbjct: 870  VHHFTPIQHPANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIRMLEDLTG----- 923

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D   IPFDD +T  L ++   +G+   +  G + A   +     + +  ++   RP   
Sbjct: 924  IDAKTIPFDDPKTLSLFSSTEGIGLTPEQLQGDQVASLAVPECGTKFVRGMLEDSRPQTF 983

Query: 656  DNIVVYNNRKNGKEKI-VSIHPLIDPMLKETQGVIIYQEQVMQ---IAQLLSGYSLSEAD 711
             ++V  +   +G      +   LI     +    I  ++ VM       +   +S    +
Sbjct: 984  SDLVRISGFSHGTNVWLDNAQDLIKNGTCKLNEAISTRDDVMNFLIHRGMDRKHSFFVME 1043

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +R+  G + + +  +    F +   +N I +    +  ++      Y F ++HA AY +
Sbjct: 1044 NVRKGKGIEKRNKQGQATTEFEAEMRENNIPEWFIESCKKI-----SYLFPRAHAVAYVM 1098

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVE---------------------------KIKK 804
            ++++ AW K ++P+ F AA  ++     +                           K K 
Sbjct: 1099 MAFRIAWFKVYHPLAFYAAYFSIRAKAFDLRIMTGDLKTQMTEFNRIKALDRAASPKDKD 1158

Query: 805  FC------QDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +  Q   + +   +       F + D  +     AI  +G T A  I+   
Sbjct: 1159 LMSALEVSMEMYQRGYRFVNVDIQHSEARRFSIKDGALLPPFLAIDSLGETVADAIVAER 1218

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             ++PF SL+D   R         +++ L   G L
Sbjct: 1219 EERPFTSLKDLQRRCKVSNTIIDLMKELKCCGEL 1252


>gi|330685790|gb|EGG97424.1| DNA polymerase III, alpha subunit [Staphylococcus epidermidis
           VCU121]
          Length = 626

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 224/680 (32%), Positives = 354/680 (52%), Gaps = 66/680 (9%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +L +H+SY LL  +L +++++ K   +    +AITDTN L+   +F      AGI P+ 
Sbjct: 3   AYLNIHTSYDLLNSSLRISDVVKKAKNEGIEHLAITDTNVLYGYPKFYDACLEAGIHPVF 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G  + +        T             VLL    +G + L +L S + +    K+   I
Sbjct: 63  GMTVYLTDGLYQLET-------------VLLAQNNDGLKDLYQLSSAIKM----KEKEDI 105

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
            + WL+      +I+                  + AE+  L F   F D+ +V       
Sbjct: 106 PIEWLKRYANHLVII-----------------FKSAEEHHLQFIDAFNDKEHV------- 141

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
              Y     + + +      V  N   +L+ ED +    L A+  ++ +          +
Sbjct: 142 ---YLNQDCIAINHRS---FVWLNTMRYLNNEDADTISALQAIKENSKLDLVAEQEDYHE 195

Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
           H L N++E+ ++     E + NT +IA+ C+  L  H  +LP+F     +          
Sbjct: 196 H-LFNKNELRNL-ECSDELIVNTDKIAQMCTAELNYHQSLLPQFQTPNGET--------- 244

Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
              +   L  +L            +Y +RL  E ++I  M F  YFLIV+D I +AK ++
Sbjct: 245 ---SKIYLWQKLEDQLNHLNLKQPEYWKRLKHEYDIITNMGFEDYFLIVSDLIHYAKTHD 301

Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
           + VGPGRGS AGS+ +Y L IT IDP+RF+LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 302 VMVGPGRGSSAGSLVSYLLGITTIDPIRFNLLFERFLNPERVTMPDIDIDFEDTRREKVI 361

Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
           +YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ + KLIP+     ++L+ 
Sbjct: 362 QYVQEKYGQLHVSGIVTFGHLLARAVARDVGRIMGFDEITLNEISKLIPHKLG--ITLEE 419

Query: 492 IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
              +  F++    +   +R  EI +KLEGL RH STHAAGI+I D  L +  P+      
Sbjct: 420 AYQNDEFKQFVHRNYRHERWFEICKKLEGLPRHTSTHAAGIIINDHALYEYAPLTLGDTG 479

Query: 552 DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
              +TQ+ M   E+ GL+K DFLGL+ L+++ + ++ + +   + +++  IPFDD + + 
Sbjct: 480 --LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIINQVKKDLNINIEIERIPFDDPKVFE 537

Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
           LL+   T GIFQLES G+R+ L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K
Sbjct: 538 LLSQGDTTGIFQLESDGVRRVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSK 597

Query: 671 IVSIHPLIDPMLKETQGVII 690
           +  +H  + P+LK T GVII
Sbjct: 598 VEYLHKDLAPILKNTYGVII 617


>gi|269798019|ref|YP_003311919.1| DNA polymerase III subunit alpha [Veillonella parvula DSM 2008]
 gi|269094648|gb|ACZ24639.1| DNA polymerase III, alpha subunit [Veillonella parvula DSM 2008]
          Length = 1263

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 175/994 (17%), Positives = 349/994 (35%), Gaps = 180/994 (18%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             +  S V L +H+  S  +  +S+ ++   +     PA+AITD   + +  E        
Sbjct: 331  NRPDSRVELHLHTKMSDKDALVSVKDLFKTVKKWGHPAVAITDHGVVQAFPEAQALGKEL 390

Query: 66   GIQPIIGCQLD------IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            G++ I G +        +   + L +  + K        I+LL     G + L +++S  
Sbjct: 391  GVKVIYGVEGYLIEDETVTKDEELVLDKKKKKEKDKRYHIILLAKNMVGLRNLYKMISIS 450

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +L +  K   R+  S ++E   EG+I+ +   +G + ++    +++     + +F     
Sbjct: 451  HL-EHYKVRPRLPRSVIEE-HREGIIIGSACEAGELMQSIVRGATKEELLEIASFYD--- 505

Query: 180  DRLYVNLQRHRG----------YDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDY 225
               Y+ +Q H             D          V++L      P+ AT +  +L+ E+ 
Sbjct: 506  ---YLEIQPHTNNMFLVRKGLMPDEQALIDMNKTVIELGEALNKPVCATCDVHYLTPEEK 562

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSF 283
               ++++         +       PD +L+   EM++ F  L E    E  V   R  + 
Sbjct: 563  IYREIMLTACGYPDADE------QPDLHLRTTDEMLASFPYLSEEKRYEVVVTNTRAIND 616

Query: 284  ILQVHAPILPRFIEK--ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
             ++   P+         E  D    E      KA+ G                +  ++RL
Sbjct: 617  SIEDIKPVPDGTYSPKIEGADEAFTEMCYRNAKAIYG------------DPLPRVVQERL 664

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-- 399
            D+EL+ I    +   + I    ++ +  +   VG  RGS   S  A    IT+++PL   
Sbjct: 665  DYELDCIISNGYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPH 723

Query: 400  ---------------------------------------FSLLFERFLNPDRMSMPDFDI 420
                                                     + F  FL  +   +PD D+
Sbjct: 724  YVCPNCKYSEFFEKGEYAGGFDLPRKDCPKCGHALQTNGHDIPFAIFLGFEGDKVPDIDL 783

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + +  +Y +  +G + V +  T G++  K A   V +                 
Sbjct: 784  NFSGDYQAKAHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKKY---------------- 827

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                           +  R+ +  +   + L   ++    +      H  GI++  R + 
Sbjct: 828  ---------------AEIRDIQARNGFFEHL---AKGFTNVKNTTGQHPGGIMVCPRDMD 869

Query: 541  --QLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
                 P+        S +  T F+   IE   + K D LG    T+++   D        
Sbjct: 870  VHHFTPIQHPANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIRMLEDLTG----- 923

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D   IPFDD +T  L ++   +G+   +  G + A   +     + +  ++   RP   
Sbjct: 924  IDAKTIPFDDPKTLSLFSSTEGIGLTPEQLQGDQVASLAVPECGTKFVRGMLEDSRPQTF 983

Query: 656  DNIVVYNNRKNGKEKI-VSIHPLIDPMLKETQGVIIYQEQVMQ---IAQLLSGYSLSEAD 711
             ++V  +   +G      +   LI     +    I  ++ VM       +   +S    +
Sbjct: 984  SDLVRISGFSHGTNVWLDNAQDLIKNGTCKLNEAISTRDDVMNFLIHRGMDRKHSFFVME 1043

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +R+  G + + +  +    F +   +N I +    +  ++      Y F ++HA AY +
Sbjct: 1044 NVRKGKGIEKRNKQGQATTEFEAEMRENNIPEWFIESCKKI-----SYLFPRAHAVAYVM 1098

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVE---------------------------KIKK 804
            ++++ AW K ++P+ F AA  ++     +                           K K 
Sbjct: 1099 MAFRIAWFKVYHPLAFYAAYFSIRAKAFDLRIMTGDLKTQLTEFNRIKALDRAASPKDKD 1158

Query: 805  FC------QDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +  Q   + +   +       F + D  +     AI  +G T A  I+E  
Sbjct: 1159 LMSALEVSMEMYQRGYRFINVDIQHSEARRFSIKDGALLPPFLAIDSLGETVADAIVEER 1218

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             ++PF SL+D   R         +++ L   G L
Sbjct: 1219 NERPFTSLKDLQRRCKVSNTIIDLMKDLKCCGEL 1252


>gi|319937869|ref|ZP_08012269.1| hypothetical protein HMPREF9488_03105 [Coprobacillus sp. 29_1]
 gi|319806775|gb|EFW03414.1| hypothetical protein HMPREF9488_03105 [Coprobacillus sp. 29_1]
          Length = 734

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 210/638 (32%), Positives = 338/638 (52%), Gaps = 35/638 (5%)

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D DF    R  ++ YVQ KYG++ V+QI+T+  L  K+ +R+VG+ L +PY   D L 
Sbjct: 2    DIDTDFQNQYRHVIVEYVQAKYGYDHVSQIVTYNMLGLKSIIRNVGKVLGIPYLVTDELS 61

Query: 477  KLIPNDPAHPV---------------SLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            K +P      V               +L+ +     F+E   +   V +L +I +  +GL
Sbjct: 62   KNVPKKIRKFVYLEEEDREEEQEIEPTLEDLKTIPFFKERIDSSEDVAQLFKIGKLFDGL 121

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
                  HA G++IG  PL Q V +       + VTQF  K  E  GL+K DFLGL TL +
Sbjct: 122  PSSTGKHACGVIIGAHPLHQYVGLM--EVDGVLVTQFEKKASESIGLLKMDFLGLITLDI 179

Query: 582  LQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
              ++L  + + +G+++DL  IP DD +T+ LL    +  +FQLES GMR  L+ MQP  +
Sbjct: 180  EVETLRLIKKNKGIEIDLDKIPLDDTKTFELLQRGQSGKVFQLESQGMRNLLKKMQPTDM 239

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
              IIA+ +L+RPGP+  I  Y        K+   HPL +   KET G+++YQEQ+MQ+ Q
Sbjct: 240  SHIIAIAALFRPGPMQFIDNYIEGMKTPSKVKYPHPLYENSAKETFGILVYQEQIMQVVQ 299

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             ++G+SL EAD+LRR +GKK K+ +D+ +E F      NG+ +  A  ++ ++ KFA+YG
Sbjct: 300  DMAGFSLGEADILRRGIGKKDKQYIDQMEEEFSKRCVDNGVPEKTAKEVYAMIKKFAEYG 359

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSH+AAYA+I+Y+TA++K +YPVEF+AA+ T+  DN +K+     + +   I+I+P S
Sbjct: 360  FNKSHSAAYALIAYETAYLKAYYPVEFMAANCTINSDNKDKLISCLAEIKAMGIEILPSS 419

Query: 821  VNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            +      F V    G + I Y    I G+G   A+ I   S  + F    DF S+  + +
Sbjct: 420  IRFSQTKFTVEKSEGQSAIRYGYIGIDGIGEDIAKTIETLSNCETF---YDFISQCPNIR 476

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             N   + +L+++G  D FG  R ++ +   +I +  ++  + ++    +I     G    
Sbjct: 477  NN--QITNLIYSGTFDIFGC-RKKMREIAPSILETVKYHNQIKSIYKSSILDGLSGE--- 530

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
                   +      + +NE+RVL    SGHPL+  + +L+        +      G++I+
Sbjct: 531  --AFYDGTEYGFKEKLDNEKRVLHCCISGHPLEQIRGVLKGYDTL-ISDIQDLNDGDDIQ 587

Query: 997  LAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
            +   + S QQ  T+K G  + ++   +     EA  FP
Sbjct: 588  ILCQINSIQQIFTKKSGEPMAFLKIEDEYDFCEAIVFP 625


>gi|294791899|ref|ZP_06757047.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            sp. 6_1_27]
 gi|294457129|gb|EFG25491.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            sp. 6_1_27]
          Length = 1245

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 176/994 (17%), Positives = 349/994 (35%), Gaps = 180/994 (18%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             +  S V L +H+  S  +  +S+ ++   I     PA+AITD   + +  E        
Sbjct: 313  NRPDSRVELHLHTKMSDKDALVSVKDLFKTIKKWGHPAVAITDHGVVQAFPEAQALGKEL 372

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ------GKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            G++ I G +  +   + +    +       K        I+LL     G + L +++S  
Sbjct: 373  GVKVIYGVEGYLIEDETVTKDEEPVLDKKKKKEKDKRYHIILLAKNMVGLRNLYKMISIS 432

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +L +  K   R+  S ++E   EG+I+ +   +G + ++    +++     + +F     
Sbjct: 433  HL-EHYKVRPRLPRSVIEE-HREGIIIGSACEAGELMQSIVRGATKEELLEIASFYD--- 487

Query: 180  DRLYVNLQRHRG----------YDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDY 225
               Y+ +Q H             D          V++L      P+ AT +  +L+ E+ 
Sbjct: 488  ---YLEIQPHTNNTFLVRKGLMPDEQALIDMNKTVIELGEALNKPVCATCDVHYLTPEEK 544

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSF 283
               ++++         +       PD +L+   EM++ F  L E  A E  V   R  + 
Sbjct: 545  IYREIMLTACGYPDADE------QPDLHLRTTDEMLASFPYLSEEKAYEVVVTNTRAIND 598

Query: 284  ILQVHAPILPRFIEK--ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
             ++   P+         E  D    E      KA+ G                +  ++RL
Sbjct: 599  SIEDIKPVPDGTYSPKIEGADEAFTEMCYRNAKAIYG------------DPLPRVVQERL 646

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-- 399
            D+EL+ I    +   + I    ++ +  +   VG  RGS   S  A    IT+++PL   
Sbjct: 647  DYELDCIISNGYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPH 705

Query: 400  ---------------------------------------FSLLFERFLNPDRMSMPDFDI 420
                                                     + F  FL  +   +PD D+
Sbjct: 706  YVCPHCKYSEFFEKGEYAGGFDLPRKDCPKCGHPLQTNGHDIPFAIFLGFEGDKVPDIDL 765

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + +  +Y +  +G + V +  T G++  K A   V +                 
Sbjct: 766  NFSGDYQAKAHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKKY---------------- 809

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                           +  R+ +  +   + L   ++    +      H  GI++  R + 
Sbjct: 810  ---------------AEIRDIQARNGFFEHL---AKGFTNVKNTTGQHPGGIMVCPRDMD 851

Query: 541  --QLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
                 P+        S +  T F+   IE   + K D LG    T+++   D        
Sbjct: 852  VHHFTPIQHPANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIRMLEDLTG----- 905

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D   IPFDD +T  L ++   +G+   +  G + A   +     + +  ++   RP   
Sbjct: 906  IDAKTIPFDDPKTLSLFSSTEGIGLTPEQLQGDQVASLAVPECGTKFVRGMLEDSRPQTF 965

Query: 656  DNIVVYNNRKNGKEKI-VSIHPLIDPMLKETQGVIIYQEQVMQ---IAQLLSGYSLSEAD 711
             ++V  +   +G      +   LI     +    I  ++ VM       +   +S    +
Sbjct: 966  SDLVRISGFSHGTNVWLDNAQDLIKNGTCKLNEAISTRDDVMNFLIHRGMDRKHSFFVME 1025

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +R+  G + + +  +    F +   +N I +    +  ++      Y F ++HA AY +
Sbjct: 1026 NVRKGKGIEKRNKQGQATTEFEAEMRENNIPEWFIESCKKI-----SYLFPRAHAVAYVM 1080

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVE---------------------------KIKK 804
            ++++ AW K ++P+ F AA  ++     +                           K K 
Sbjct: 1081 MAFRIAWFKVYHPLAFYAAYFSIRAKAFDLRIMTGDLKTQLTEFNRIKALDRAASPKDKD 1140

Query: 805  FC------QDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +  Q   + +   +       F + D  +     AI  +G T A  I+E  
Sbjct: 1141 LMSALEVSMEMYQRGYRFINVDIQHSEARRFSIKDGALLPPFLAIDSLGETVADAIVEER 1200

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             ++PF SL+D   R         +++ L   G L
Sbjct: 1201 NERPFTSLKDLQRRCKVSNTIIDLMKDLKCCGEL 1234


>gi|254416531|ref|ZP_05030283.1| DNA polymerase III, alpha subunit subfamily, putative [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176735|gb|EDX71747.1| DNA polymerase III, alpha subunit subfamily, putative [Microcoleus
           chthonoplastes PCC 7420]
          Length = 835

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 215/520 (41%), Positives = 315/520 (60%), Gaps = 40/520 (7%)

Query: 246 PRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            R +   YLK+  EM  +F D      + EA+ NT+E+A +      +  P +P +   +
Sbjct: 1   MRYSGTEYLKSAEEMAQLFRDHLPDEVIQEAIANTLEVADKVKRYDIMGEPRIPNYPVPK 60

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   ++ L      GL  R+  G  ++      Y++RL++EL ++ +M FS YFL+
Sbjct: 61  G----HSADSYLEEVTWDGLLERM--GCRSRSDIDLVYKERLEYELKMMQQMGFSTYFLV 114

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V D+I++A+   IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP+R SMPD D
Sbjct: 115 VWDYIKYARDQKIPVGPGRGSAAGSLVAYSLKITNIDPVHHGLLFERFLNPERKSMPDID 174

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            DFC +RRDEVI YV +KYG +RVAQIITF  + +KA L+DV R L +PY + DR+ K+I
Sbjct: 175 TDFCIERRDEVIEYVTHKYGADRVAQIITFNRMTSKAVLKDVARVLNIPYGESDRMAKMI 234

Query: 480 PNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
           P     P  L+ +  +      FR+A L +P V R L+++ ++EG  +    HAAG+VI 
Sbjct: 235 PVSRGKPTKLKVMISEKTPTPEFRDAYLNNPEVQRWLDMAIRIEGTNKTFGVHAAGVVIS 294

Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
             PL ++VP+  +      +TQ+ M+ +E  GL+K DFLGLK LT +QK+ + + Q   +
Sbjct: 295 SEPLDEIVPLQVN-NEGAVITQYFMEDLESLGLLKMDFLGLKNLTTIQKTAELIRQHQNI 353

Query: 595 KVDLSLIPFDDHE-------------------TYHLLTTKGTLGIFQLESSGMRQALEGM 635
            +DL  +P D+ +                   TY +L      GIFQLESSGMRQ +  +
Sbjct: 354 TLDLDQLPLDERKAFEIVAKGEIKKIPDDIKQTYTVLEKGELEGIFQLESSGMRQVVREL 413

Query: 636 QPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
           +P  IEDI ++++LYRPGP+D   I  + NRK+GKEK+   HPL++P+LKET G + YQE
Sbjct: 414 KPSSIEDISSILALYRPGPLDAGLIPKFINRKHGKEKVEYQHPLLEPILKETYGTLCYQE 473

Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
           Q+M++AQ L+GYSL +AD+LRR +     E +D +  R +
Sbjct: 474 QIMKMAQDLAGYSLGQADLLRRCLS-GSTEIIDAETGRLV 512



 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 11/94 (11%)

Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
           + QE+V  ++   +   ++   +    MGKK   EM+K +E FI GA+KNG++K IA  +
Sbjct: 662 VGQEEVFDLSISQTHNLIANDFIAHNCMGKKKVAEMEKHREIFIDGAAKNGVAKRIAEEL 721

Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           FE +  FA+Y            +SY T  +   Y
Sbjct: 722 FEQMILFAEYC-----------LSYDTQILTVEY 744


>gi|282850246|ref|ZP_06259625.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            parvula ATCC 17745]
 gi|282579739|gb|EFB85143.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            parvula ATCC 17745]
          Length = 1263

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 176/994 (17%), Positives = 349/994 (35%), Gaps = 180/994 (18%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             +  S V L +H+  S  +  +S+ ++   I     PA+AITD   + +  E        
Sbjct: 331  NRPDSRVELHLHTKMSDKDALVSVKDLFKTIKKWGHPAVAITDHGVVQAFPEAQALGKEL 390

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ------GKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            G++ I G +  +   + +    +       K        I+LL     G + L +++S  
Sbjct: 391  GVKVIYGVEGYLIEDETVIKDEEPVLDKKKKKEKDKRYHIILLAKNMVGLRNLYKMISIS 450

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +L +  K   R+  S ++E   EG+I+ +   +G + ++    +++     + +F     
Sbjct: 451  HL-EHYKVRPRLPRSVIEE-HREGIIIGSACEAGELMQSIVRGATKEELLEVASFYD--- 505

Query: 180  DRLYVNLQRHRG----------YDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDY 225
               Y+ +Q H             D          V++L      P+ AT +  +L+ E+ 
Sbjct: 506  ---YLEIQPHTNNTFLVRKGLMPDEQALIDMNKTVIELGEALNKPVCATCDVHYLTPEEK 562

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSF 283
               ++++         +       PD +L+   EM++ F  L E  A E  V   R  + 
Sbjct: 563  IYREIMLTACGYPDADE------QPDLHLRTTDEMLASFPYLSEEKAYEVVVTNTRAIND 616

Query: 284  ILQVHAPILPRFIEK--ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
             ++   P+         E  D    E      KA+ G                +  ++RL
Sbjct: 617  SIEDIKPVPDGTYSPKIEGADEAFTEMCYRNAKAIYG------------DPLPRVVQERL 664

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-- 399
            D+EL+ I    +   + I    ++ +  +   VG  RGS   S  A    IT+++PL   
Sbjct: 665  DYELDCIISNGYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPH 723

Query: 400  ---------------------------------------FSLLFERFLNPDRMSMPDFDI 420
                                                     + F  FL  +   +PD D+
Sbjct: 724  YVCPNCKYSEFFEKGEYAGGFDLPRKDCPECGHALQTNGHDIPFAIFLGFEGDKVPDIDL 783

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + +  +Y +  +G + V +  T G++  K A   V +                 
Sbjct: 784  NFSGDYQAKAHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKKY---------------- 827

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                           +  R+ +  +   + L   ++    +      H  GI++  R + 
Sbjct: 828  ---------------AEIRDIQARNGFFEHL---AKGFTNVKNTTGQHPGGIMVCPRDMD 869

Query: 541  --QLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
                 P+        S +  T F+   IE   + K D LG    T+++   D        
Sbjct: 870  VHHFTPIQHPANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIRMLEDLTG----- 923

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D   IPFDD +T  L ++   +G+   +  G + A   +     + +  ++   RP   
Sbjct: 924  IDAKTIPFDDPKTLSLFSSTEGIGLTPEQLQGDQVASLAVPECGTKFVRGMLEDSRPQTF 983

Query: 656  DNIVVYNNRKNGKEKI-VSIHPLIDPMLKETQGVIIYQEQVMQ---IAQLLSGYSLSEAD 711
             ++V  +   +G      +   LI     +    I  ++ VM       +   +S    +
Sbjct: 984  SDLVRISGFSHGTNVWLDNAQDLIKNGTCKLNEAISTRDDVMNFLIHRGMDRKHSFFVME 1043

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +R+  G + + +  +    F +   +N I +    +  ++      Y F ++HA AY +
Sbjct: 1044 NVRKGKGIEKRNKQGQATTEFEAEMRENNIPEWFIESCKKI-----SYLFPRAHAVAYVM 1098

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVE---------------------------KIKK 804
            ++++ AW K ++P+ F AA  ++     +                           K K 
Sbjct: 1099 MAFRIAWFKVYHPLAFYAAYFSIRAKAFDLRIMTGDLKTQLTEFNRIKALDRAASPKDKD 1158

Query: 805  FC------QDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +  Q   + +   +       F + D  +     AI  +G T A  I+E  
Sbjct: 1159 LMSALEVSMEMYQRGYRFINVDIQHSEARRFSIKDGALLPPFLAIDSLGETVADAIVEER 1218

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             ++PF SL+D   R         +++ L   G L
Sbjct: 1219 NERPFTSLKDLQRRCKVSNTIIDLMKDLKCCGEL 1252


>gi|294793759|ref|ZP_06758896.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            sp. 3_1_44]
 gi|294455329|gb|EFG23701.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            sp. 3_1_44]
          Length = 1219

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 177/994 (17%), Positives = 349/994 (35%), Gaps = 180/994 (18%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             +  S V L +H+  S  +  +S+ ++   I     PA+AITD   + +  E        
Sbjct: 287  NRPDSRVELHLHTKMSDKDALVSVKDLFKTIKKWGHPAVAITDHGVVQAFPEAQALGKEL 346

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ------GKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            G++ I G +  +   + +    +       K        I+LL     G + L +++S  
Sbjct: 347  GVKVIYGVEGYLIEDETVIKDEEPVLDKKKKKEKDKRYHIILLAKNMVGLRNLYKMISIS 406

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +L +  K   R+  S ++E   EG+I+ +   +G + ++    +++     + +F     
Sbjct: 407  HL-EHYKVRPRLPRSVIEE-HREGIIIGSACEAGELMQSIVRGATKEELLEVASFYD--- 461

Query: 180  DRLYVNLQRHRG----------YDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDY 225
               Y+ +Q H             D          V++L      P+ AT +  +L+ E+ 
Sbjct: 462  ---YLEIQPHTNNTFLVRKGLMPDEQALIDMNKTVIELGEALNKPVCATCDVHYLTPEEK 518

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSF 283
               ++++         +       PD +L+   EM++ F  L E  A E  V   R  + 
Sbjct: 519  IYREIMLTACGYPDADE------QPDLHLRTTDEMLASFPYLSEEKAYEVVVTNTRAIND 572

Query: 284  ILQVHAPILPRFIEK--ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
             ++   P+         E  D    E      KA+ G                +  ++RL
Sbjct: 573  SIEDIKPVPDGTYSPKIEGADEAFTEMCYRNAKAIYG------------DPLPRVVQERL 620

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-- 399
            D+EL+ I    +   + I    ++ +  +   VG  RGS   S  A    IT+++PL   
Sbjct: 621  DYELDCIISNGYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPH 679

Query: 400  ---------------------------------------FSLLFERFLNPDRMSMPDFDI 420
                                                     + F  FL  +   +PD D+
Sbjct: 680  YVCPNCKYSEFFEKGEYAGGFDLPRKDCPECGHALQTNGHDIPFAIFLGFEGDKVPDIDL 739

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + +  +Y +  +G + V +  T G++  K A   V +                 
Sbjct: 740  NFSGDYQAKAHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKKY---------------- 783

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                           +  R+ +  +   + L   ++    +      H  GI++  R + 
Sbjct: 784  ---------------AEIRDIQARNGFFEHL---AKGFTNVKNTTGQHPGGIMVCPRDMD 825

Query: 541  --QLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
                 P+        S +  T F+   IE   + K D LG    T+++   D        
Sbjct: 826  VHHFTPIQHPANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIRMLEDLTG----- 879

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D   IPFDD +T  L ++   +G+   +  G + A   +     + +  ++   RP   
Sbjct: 880  IDAKTIPFDDPKTLSLFSSTEGIGLTPEQLQGDQVASLAVPECGTKFVRGMLEDSRPQTF 939

Query: 656  DNIVVYNNRKNGKEKI-VSIHPLIDPMLKETQGVIIYQEQVMQ---IAQLLSGYSLSEAD 711
             ++V  +   +G      +   LI     +    I  ++ VM       +   +S    +
Sbjct: 940  SDLVRISGFSHGTNVWLDNAQDLIKNGTCKLNEAISTRDDVMNFLIHRGMDRKHSFFVME 999

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +R+  G + + +  +    F +   KN I +    +  ++      Y F ++HA AY +
Sbjct: 1000 NVRKGKGIEKRNKQGQATTEFEAEMRKNNIPEWFIESCKKI-----SYLFPRAHAVAYVM 1054

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVE---------------------------KIKK 804
            ++++ AW K ++P+ F AA  ++     +                           K K 
Sbjct: 1055 MAFRIAWFKVYHPLAFYAAYFSIRAKAFDLRIMTGDLKTQLTEFNRIKALDRAASPKDKD 1114

Query: 805  FC------QDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +  Q   + +   +       F + D  +     AI  +G T A  I+E  
Sbjct: 1115 LMSALEVSMEMYQRGYRFINVDIQHSEARRFSIKDGALLPPFLAIDSLGETVADAIVEER 1174

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             ++PF SL+D   R         +++ L   G L
Sbjct: 1175 NERPFTSLKDLQRRCKVSNTIIDLMKDLKCCGEL 1208


>gi|313894543|ref|ZP_07828107.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            sp. oral taxon 158 str. F0412]
 gi|313440939|gb|EFR59367.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            sp. oral taxon 158 str. F0412]
          Length = 1261

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 177/994 (17%), Positives = 348/994 (35%), Gaps = 180/994 (18%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             +  S V L +H+  S  +  +S+ ++   I     PA+AITD   + +  E        
Sbjct: 329  NRPDSRVELHLHTKMSDKDALVSVKDLFKTIKKWGHPAVAITDHGVVQAFPEAQALGKEL 388

Query: 66   GIQPIIGCQLD------IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            G++ I G +        +   +   +  + K        I+LL     G + L +++S  
Sbjct: 389  GVKVIYGVEGYLIEDEIVARDEEPVVDKKKKKEKDKRYHIILLAKNMVGLRNLYKMISIS 448

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +L +  K   R+  S ++E   EG+I+ +   +G + ++    +++     + +F     
Sbjct: 449  HL-EHYKVRPRLPRSVIEE-HREGIIIGSACEAGELMQSIVRGATKEELLEVASFYD--- 503

Query: 180  DRLYVNLQRHRG----------YDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDY 225
               Y+ +Q H             D          V++L      P+ AT +  +L+ E+ 
Sbjct: 504  ---YLEVQPHTNNMFLVRKGLMPDEQALIDMNKTVIELGEALNKPVCATCDVHYLTPEEK 560

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSF 283
               ++++         +       PD +L+   EM++ F  L E  A E  V   R  + 
Sbjct: 561  IYREIMLTACGYPDADE------QPDLHLRTTDEMLASFPYLSEEKAYEIVVTNTRAIND 614

Query: 284  ILQVHAPILPRFIEK--ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
             ++   P+         E  D    E      KA+ G                +  ++RL
Sbjct: 615  SIEDIKPVPDGTYSPKIEGADEAFTEMCYRNAKAIYG------------DPLPRVVQERL 662

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-- 399
            D+EL+ I    +   + I    ++ +  +   VG  RGS   S  A    IT+++PL   
Sbjct: 663  DYELDCIISNGYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPH 721

Query: 400  ---------------------------------------FSLLFERFLNPDRMSMPDFDI 420
                                                     + F  FL  +   +PD D+
Sbjct: 722  YVCPNCKHSEFFEKGEYAGGFDLPRKDCPECGHALQTNGHDIPFAIFLGFEGDKVPDIDL 781

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + +  +Y +  +G + V +  T G++  K A   V +  ++             
Sbjct: 782  NFSGDYQAKAHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKKYAEV------------- 828

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                     + I   S F E             +++    +      H  GI++  R + 
Sbjct: 829  ---------RDIQARSGFFE------------HLAKGFTNVKNTTGQHPGGIMVCPRDMD 867

Query: 541  --QLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
                 P+        S +  T F+   IE   + K D LG    T+++   D        
Sbjct: 868  VHHFTPIQHPANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIRMLEDLTG----- 921

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D   IPFDD  T  L ++   +G+   +  G + A   +     + +  ++   RP   
Sbjct: 922  IDAKTIPFDDPRTLSLFSSTEGIGLTPEQLQGDQVASLAVPECGTKFVRGMLEDSRPQTF 981

Query: 656  DNIVVYNNRKNGKEKI-VSIHPLIDPMLKETQGVIIYQEQVMQ---IAQLLSGYSLSEAD 711
             ++V  +   +G      +   LI     +    I  ++ VM       +   +S    +
Sbjct: 982  SDLVRISGFSHGTNVWLDNAQDLIKNGTCKLNEAISTRDDVMNFLIHRGMDRKHSFFVME 1041

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +R+  G + + +  +    F +   +N I +    +  ++      Y F ++HA AY +
Sbjct: 1042 NVRKGKGIEKRNKQGQATTEFEAEMRENNIPEWFIESCKKI-----SYLFPRAHAVAYVM 1096

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVE---------------------------KIKK 804
            ++++ AW K ++P+ F AA  ++     +                           K K 
Sbjct: 1097 MAFRIAWFKVYHPLAFYAAYFSIRAKAFDLRIMTGDLKTQMTEFNRIKALDRAASPKDKD 1156

Query: 805  FC------QDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +  Q   + +   +       F + D  +     AI  +G T A  I+   
Sbjct: 1157 LMSALEVSMEMYQRGYRFVNVDIQHSEARRFSIKDGALLPPFLAIDSLGETVADAIVAER 1216

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             ++PF SL+D   R         +++ L   G L
Sbjct: 1217 EERPFTSLKDLQRRCKVSNTIIDLMKELKCCGEL 1250


>gi|303231452|ref|ZP_07318183.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            atypica ACS-049-V-Sch6]
 gi|302513889|gb|EFL55900.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            atypica ACS-049-V-Sch6]
          Length = 1241

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 177/992 (17%), Positives = 343/992 (34%), Gaps = 178/992 (17%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            ++  S V L +H+  S  +  +S+ ++   +     PA+AITD   + +  E        
Sbjct: 312  DRPDSRVELHLHTKMSDKDALVSIKDLFKTVKKWGHPAVAITDHGVVQAFPEAQALGKEL 371

Query: 66   GIQPIIGCQLD----IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            G++ I G +       D++  L +    +        I+LL     G + L +++S  +L
Sbjct: 372  GVKVIYGVEGYLVDDADLEKELSLDVVKRKDEAPRYHIILLAQNMVGLRNLYKMISISHL 431

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             +  K+  R+  S ++E   EG+++ +   +G + +A    +S+     + +F       
Sbjct: 432  -EYYKRRPRLPRSIIEE-HREGILIGSACEAGELMQAIVKGASKEELLTIASFYD----- 484

Query: 182  LYVNLQRHRG----------YDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
             Y+ +Q H             D          V++L       + AT +  +L+ E+   
Sbjct: 485  -YLEIQPHTNNTFLIRKGIVPDEQALIDMNKTVIELGEALNKRVCATCDVHYLTPEEKIY 543

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFIL 285
             ++++         +       PD +L+   EM++ F  L E  A E  V   R  +  +
Sbjct: 544  REIMLTACGFPDADE------QPDLHLRTTDEMLASFPYLSEEKAYEVVVANTRAINDSI 597

Query: 286  QVHAPILPRFIEK--ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            +   P+         E  D    E   +  K + G                +  ++RLD+
Sbjct: 598  EDIKPVPDGTYSPKIEGADEAFTEMCYVNAKKIYG------------DPLPRVVQERLDY 645

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            EL+ I    +   + I    ++ +  +   VG  RGS   S  A    IT+++PL     
Sbjct: 646  ELDCIISNGYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPHYI 704

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                   + F  FL  +   +PD D++F
Sbjct: 705  CPECKWSEFYENGEYAGGFDLPRRDCPNCGHPLQTNGHDIPFAIFLGFEGDKVPDIDLNF 764

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D + +  +Y +  +G + V +  T G++  K A   V +                   
Sbjct: 765  SGDYQAKAHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKKY------------------ 806

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS-- 540
                             E R        L  +++    +      H  GI++  R +   
Sbjct: 807  ----------------AELRNIQARSGFLEHLAKGFTNVKNTTGQHPGGIMVCPRDMDVH 850

Query: 541  QLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+        S +  T F+   IE   + K D LG    T+++   D        +D
Sbjct: 851  HFTPIQHPANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIRMLEDLTG-----ID 904

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               IPFDD  T  L ++   +G+   +  G + A   +     + +  ++   RP    +
Sbjct: 905  AKTIPFDDPRTLSLFSSTEGIGLTPEQLQGDQVASLAVPECGTKFVRGMLEDSRPQTFSD 964

Query: 658  IVVYNNRKNGKEKI-VSIHPLIDPMLKETQGVIIYQEQVMQ---IAQLLSGYSLSEADVL 713
            +V  +   +G      +   LI     +    I  ++ VM       +    S    + +
Sbjct: 965  LVRISGFSHGTNVWLDNAQELIKNGTCKLNEAISTRDDVMNFLIHRGMNKKNSFFVMENV 1024

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+  G + + +  +    F     +N I +    +  ++      Y F ++HA AY +++
Sbjct: 1025 RKGKGIEKRNKQGQATTEFEKEMRENNIPEWFIESCKKI-----SYLFPRAHAVAYVMMA 1079

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVE---------------------------KIKKFC 806
            ++ AW K ++P+ F AA  ++     +                           K K   
Sbjct: 1080 FRIAWFKVYHPLAFYAAYFSIRAKAFDLRIMTGDLNTQLKEFNRIKALDRGASPKEKDLM 1139

Query: 807  ------QDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                   +  Q   + +   +       F + D  +     AI  +G T A  I+E    
Sbjct: 1140 SALEVSMEMYQRGYRFINVDIQHSGARRFSIKDGALLPPFLAIDSLGETVADAIVEEREA 1199

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            KPF SL+D   R          ++ L   G L
Sbjct: 1200 KPFTSLKDLQRRCKVSATIIETMKELKCCGDL 1231


>gi|303228949|ref|ZP_07315759.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            atypica ACS-134-V-Col7a]
 gi|302516363|gb|EFL58295.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            atypica ACS-134-V-Col7a]
          Length = 1241

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 176/992 (17%), Positives = 342/992 (34%), Gaps = 178/992 (17%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            ++  S V L +H+  S  +  +S+ ++   +     PA+AITD   + +  E        
Sbjct: 312  DRPDSRVELHLHTKMSDKDALVSIKDLFKTVKKWGHPAVAITDHGVVQAFPEAQALGKEL 371

Query: 66   GIQPIIGCQLD----IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            G++ I G +       D++  L +    +        I+LL     G + L +++S  +L
Sbjct: 372  GVKVIYGVEGYLVDDADLEKELSLDVVKRKDEAPRYHIILLAQNMVGLRNLYKMISISHL 431

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             +  K+  R+  S ++E   EG+++ +   +G + +A    +S+     + +F       
Sbjct: 432  -EYYKRRPRLPRSIIEE-HREGILIGSACEAGELMQAIVKGASKEELLTIASFYD----- 484

Query: 182  LYVNLQRHRG----------YDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
             Y+ +Q H             D          V++L       + AT +  +L+ E+   
Sbjct: 485  -YLEIQPHTNNTFLIRKGIVPDEQALIDMNKTVIELGEALNKRVCATCDVHYLTPEEKIY 543

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR--CSFIL 285
             ++++         +       PD +L+   EM++ F  L E     V IA     +  +
Sbjct: 544  REIMLTACGFPDADE------QPDLHLRTTDEMLASFPYLSEEKAYEVVIANTRAINDSI 597

Query: 286  QVHAPILPRFIEK--ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            +   P+         E  D    E   +  K + G                +  ++RLD+
Sbjct: 598  EDIKPVPDGTYSPKIEGADEAFTEMCYVNAKKIYG------------DPLPRVVQERLDY 645

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            EL+ I    +   + I    ++ +  +   VG  RGS   S  A    IT+++PL     
Sbjct: 646  ELDCIISNGYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPHYI 704

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                   + F  FL  +   +PD D++F
Sbjct: 705  CPECKWSEFYENGEYAGGFDLPRRDCPNCGHPLQTNGHDIPFAIFLGFEGDKVPDIDLNF 764

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D + +  +Y +  +G + V +  T G++  K A   V +                   
Sbjct: 765  SGDYQAKAHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKKY------------------ 806

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS-- 540
                             E R        L  +++    +      H  GI++  R +   
Sbjct: 807  ----------------AELRNIQARSGFLEHLAKGFTNVKNTTGQHPGGIMVCPRDMDVH 850

Query: 541  QLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+        S +  T F+   IE   + K D LG    T+++   D        +D
Sbjct: 851  HFTPIQHPANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIRMLEDLTG-----ID 904

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               IPFDD  T  L ++   +G+   +  G + A   +     + +  ++   RP    +
Sbjct: 905  AKTIPFDDPRTLSLFSSTEGIGLTPEQLQGDQVASLAVPECGTKFVRGMLEDSRPQTFSD 964

Query: 658  IVVYNNRKNGKEKI-VSIHPLIDPMLKETQGVIIYQEQVMQ---IAQLLSGYSLSEADVL 713
            +V  +   +G      +   LI     +    I  ++ VM       +    S    + +
Sbjct: 965  LVRISGFSHGTNVWLDNAQELIKNGTCKLNEAISTRDDVMNFLIHRGMNKKNSFFVMENV 1024

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+  G + + +  +    F     +N I +    +  ++      Y F ++HA AY +++
Sbjct: 1025 RKGKGIEKRNKQGQATTEFEKEMRENNIPEWFIESCKKI-----SYLFPRAHAVAYVMMA 1079

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVE---------------------------KIKKFC 806
            ++ AW K ++P+ F AA  ++     +                           K K   
Sbjct: 1080 FRIAWFKVYHPLAFYAAYFSIRAKAFDLRIMTGDLNTQLKEFNRIKALDRGASPKEKDLM 1139

Query: 807  ------QDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                   +  Q   + +   +       F + D  +     AI  +G T A  I+E    
Sbjct: 1140 SALEVSMEMYQRGYRFINVDIQHSGARRFSIKDGALLPPFLAIDSLGETVADAIVEERET 1199

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            KPF SL+D   R          ++ L   G L
Sbjct: 1200 KPFTSLKDLQRRCKVSATIIETMKELKCCGDL 1231


>gi|83589893|ref|YP_429902.1| DNA polymerase III, alpha subunit [Moorella thermoacetica ATCC 39073]
 gi|83572807|gb|ABC19359.1| DNA polymerase III, alpha subunit, Gram-positive type [Moorella
            thermoacetica ATCC 39073]
          Length = 1214

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 188/980 (19%), Positives = 346/980 (35%), Gaps = 178/980 (18%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S ++G   +  ++ + A     A+AITD   + +    ++     G++ I 
Sbjct: 312  VELHLHTKMSAMDGVTEVAAVVQQAARWGHGAVAITDHGVVQAFPAAAEAGRKYGVKIIY 371

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +  QDN    +Q          I++LV   +G   L  L+SR +L D   +  R+
Sbjct: 372  GVEGYLFDQDNQPPDHQ------RTYHIIILVKNKQGLANLYRLISRAHL-DFFYRKPRL 424

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN----LQ 187
                +QE   EGL++ T   +G + R +   + Q   + + +F      +   N    ++
Sbjct: 425  PRHLIQEY-REGLLLGTACEAGELIRGYLAGADQTRLEEIASFYDFLEIQPLANNDFLIR 483

Query: 188  RHRGYDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            + +  DR        Q++ L      P+VAT +  FL+ ED     +L+A          
Sbjct: 484  QGQVADRQALMDMNRQIIALGQKLGKPVVATGDVHFLNPEDAIYRQILLAGQGYA----- 538

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECD 301
                V    Y +   EM++ F  L     + V I      +  ++   PI   F   E  
Sbjct: 539  --DEVQAPLYYRTTEEMLAEFDYLDGETAHQVVITNPRLIAEQVEELKPIPDEFYPPEIP 596

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              ++E    +  +A       L           +  R RLD E+  I    F+  +LI  
Sbjct: 597  GAEEELTRIVTTRAKEWYGDPL----------PEIVRARLDKEMQAIIGHGFAVLYLIAH 646

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------- 399
              +  + ++   VG  RGS   S+ A    IT+++PL                       
Sbjct: 647  KLVHKSNEDGYLVG-SRGSVGSSLVATMAGITEVNPLPPHYRCPSCRYSEFISDGSAKCG 705

Query: 400  -------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL      +PD D++F  + +    +Y +  +G 
Sbjct: 706  ADLPARDCPRCGTRLLKDGHDIPFEVFLGFKGDKVPDIDLNFSGEYQPRAHQYTETIFGK 765

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            + V +  T  +L  + A   V + L                                  E
Sbjct: 766  DHVFRAGTIATLAERTAFGFVHKYL----------------------------------E 791

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYR---DVRSDLPV 555
             R        +  + + + G+ R    H  G+++  +   +    P+     D  S    
Sbjct: 792  ERGLKARQAEINCLVKGITGVKRTTGQHPGGLMVVPKGVDMHLFTPLQHPADDTGSGTIT 851

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T F+   I  + L+K D LG    T+++   D             IP D+  T  L ++ 
Sbjct: 852  THFDYHSI-SSRLVKLDLLGHDDPTVIKMLEDLTGVNAR-----EIPLDEPRTMSLFSSV 905

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LGI   +  G +    G+       +  ++   RP     +V  +   +G +  + + 
Sbjct: 906  EALGIRPEDI-GSQVGTLGIPEFGTRFVRQMLEDTRPRTFAELVRISGFSHGTDVWLNNA 964

Query: 675  HPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI     +    I  ++ +M       +++  +    + +R+  G K +         
Sbjct: 965  QDLIKSGTAKLSEAISTRDDIMNYLMQHGVVADIAFRTMEDVRKGKGVKKE--------- 1015

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
                  +  I        F    K   Y F K+HA AY  ++++ A+ K +YP  F A+ 
Sbjct: 1016 -----YEEAIRAAGVPEWFIQSCKKISYLFPKAHAVAYVTMAFRIAYFKVYYPEAFYASF 1070

Query: 792  MTLEMDNVEK---------------------------------IKKFCQDARQFNIQIMP 818
             ++  D  +                                  I +  ++     I +  
Sbjct: 1071 FSIRADEFDADVVAAGLPRIQEEIAALERKGNEATAREKNILTILEVAREMYCRGITLER 1130

Query: 819  PSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
              +       F V   ++   LAA+ GVG   A  I+ A  ++PF S+ED   R    ++
Sbjct: 1131 IDLQKADASRFLVEPGKLLPPLAALPGVGRAAAEAIVRARQERPFTSVEDLQYR---SRV 1187

Query: 878  NRRVLESLVFAGALDCFGYS 897
            ++ V+E+L   GAL     S
Sbjct: 1188 SKTVIEALEKHGALADLPPS 1207


>gi|153005061|ref|YP_001379386.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. Fw109-5]
 gi|152028634|gb|ABS26402.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 1197

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 197/761 (25%), Positives = 324/761 (42%), Gaps = 78/761 (10%)

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     G   R        G   +D  ++L  EL ++ ++ ++ YFL V D +++A+  
Sbjct: 424  LRALVREGARWRYG------GEPPEDVARQLARELELVEQLGYASYFLTVWDVVRFARSR 477

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I +  GRGS A S   YAL IT IDP+R  LLFERF++ +R   PD DIDF  +RR+EV
Sbjct: 478  GI-LCQGRGSAANSAVCYALGITAIDPVRMGLLFERFISAERGEPPDIDIDFEHERREEV 536

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YV  +YG +R   +    + + K+ALRDVG+AL +   QVDRL KL+         L 
Sbjct: 537  IQYVYERYGRDRAGMVCEVITYRGKSALRDVGKALGLSLPQVDRLAKLV----GMYEDLS 592

Query: 491  AIADDSRFREARLADPSVDRL---LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             +  +    +A L   + DR+   L+++++L+G  RH S H  G VI  RPL + VP+  
Sbjct: 593  EVGPE-LLAQAGLDVEASDRVRMTLDLARELQGFPRHLSIHVGGFVITRRPLCETVPIEP 651

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                   + Q++   +            L  + LL   +     R + +  +  P     
Sbjct: 652  AAMPGRTIVQWDKDDLADL--------DLLKVDLLGLGMLTALSRALALLAAHRPAPALP 703

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEG---MQPDCIEDIIALVSLYRPGP---------- 654
            T   L    +L     E   +   L     +    IE    +    R  P          
Sbjct: 704  TAAGLAHPDSLATIPPEDPAVYDMLCKADSIGVFQIESRAQMSLAPRLKPRNFYDLVISV 763

Query: 655  ---------IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
                        +  Y  R++GKE++   +P ++P+L +T GV ++QEQ+M++A + +G+
Sbjct: 764  GIVRPGPIQGGMVHPYLRRRDGKEQVRYPYPPLEPVLAKTLGVPLFQEQIMRLAVVAAGF 823

Query: 706  SLSEADVLRRAMGKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            +  EAD LRR M  +   E++   K R ++G ++ GIS   A  IF  L  FA YGF +S
Sbjct: 824  TPGEADELRRLMTHRRSHEKLAAMKARLLAGMAERGISAADAELIFHQLLGFAGYGFPES 883

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+A++A++ Y +AW++ ++P  F  A +  +           +DA++  +++    V   
Sbjct: 884  HSASFALLVYASAWLRRYHPAAFACALLNSQPMGFYAPHTLVEDAKRHGVEVRGVDVCAS 943

Query: 825  CVDFKV------------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
              +  +                I   L  ++G+       I+ A   +P   L D   R 
Sbjct: 944  GWESGLEGRAPGEPAGAGEAPAIRLGLHLVRGLPRDVGDAIVAARRARPLADLGDLVRR- 1002

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
                L+R  L  L  A AL      R             A W          ++FA    
Sbjct: 1003 --GGLSRAWLVRLAEADALGSLAPDRRG-----------AIWRSLAMEADGGDLFAGVTP 1049

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               D  TL   S    +     +         GHP+ V +  L    ++   E       
Sbjct: 1050 AEPDA-TLPSASA---AEEVSEDFATTSVSVRGHPMAVLRGTLPGGAVRTARELTRLPDR 1105

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + +A +V+ +Q+ +T  G  I +V+  +          P
Sbjct: 1106 APVEVAGLVIVRQRPQTAAG--IVFVSLEDETGIANLVVMP 1144



 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 104/298 (34%), Gaps = 35/298 (11%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L+  S +S LEGA     ++ + +     A+A+TD N L+  +    +A   G+ 
Sbjct: 2   PRYAELRCRSCFSFLEGASHPEELVARASELGLSALALTDVNGLYGIVRAHGEAKRRGLP 61

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ---- 124
            ++G +L +                     +VLL    EGY  L  L +R +  +     
Sbjct: 62  LLVGAELVVT-----------GLATGRPARLVLLAQDREGYAGLCRLATRAHGAEDPARA 110

Query: 125 ---GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                +               GL  L  G+ G                     K++FG R
Sbjct: 111 APRRPREEVAVALEAVAARARGLFALFPGADGD---------------AAARLKEIFGAR 155

Query: 182 LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
           L + + RHR   +  R      +     + +  TN+            DVL  V H T V
Sbjct: 156 LALAVARHRVAGEEARVLAARAIGRRLGIRIAVTNDVHTHDRRRQVLQDVLTCVRHGTTV 215

Query: 241 SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            +  R      +  LK   EM  ++ D PE LE   EIA  C F L+      P    
Sbjct: 216 DRAGRRLFPNAERTLKAPEEMARLWGDFPEGLEAAAEIADGCRFRLEEIRGEHPLPPV 273


>gi|317472885|ref|ZP_07932191.1| PHP domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899605|gb|EFV21613.1| PHP domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 475

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 168/482 (34%), Positives = 262/482 (54%), Gaps = 18/482 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SF HL VH+ YSLL+G+  +  ++         +IAITD   ++  ++F + A A GI+P
Sbjct: 2   SFTHLHVHTEYSLLDGSSKIKELVHHTKELGMDSIAITDHGVMYGVIDFYKAAKAEGIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I+GC++ +      +   + +        +VLL     GY  L+++VSR +         
Sbjct: 62  ILGCEIYVTPGSRFE--KEARQGSSNYFHLVLLAENDRGYHNLMKIVSRGFTEG-FYYKP 118

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
           R+    L+   +EGLI L+    G I         + A++  L F++++     ++ LQ 
Sbjct: 119 RVDYEVLERY-SEGLIALSACLGGEIPTYIREGDYEKAKETALRFERIYGKGNFFLELQD 177

Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H   ++    S +++++    + LVATN+  +   ED E HD+L+ +     V+ +DR R
Sbjct: 178 HGISEQTTVNSALIKMSKETGIELVATNDIHYTFAEDVEPHDILLCIQTGKKVADEDRMR 237

Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +YLK+  EM  +F    +A+ENT +IA RC+  +      +P+F   E D     
Sbjct: 238 YEGGQYYLKSPEEMERLFPYARQAVENTGKIAERCNVEIIFGEQKVPKFDVPEGD----T 293

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + LR     G+  R            +   +        I  M +  YFLIV DFI +
Sbjct: 294 STSYLRKLCEEGICRRYDDVTEELRERLEFELK-------TIENMGYVDYFLIVWDFIHY 346

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           AK++ I VGPGRGS AGS+ +Y L ITDI+P+++ LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 347 AKEHGIAVGPGRGSAAGSIVSYCLEITDIEPIKYQLLFERFLNPERVSMPDIDIDFCYER 406

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R EVI YV  KYG ++V QIITFG++ A+A +RDVGR L +PY++VD + K++PN+    
Sbjct: 407 RQEVIDYVVEKYGKDKVVQIITFGTMAARAVIRDVGRVLDIPYAKVDGIAKMVPNELNIT 466

Query: 487 VS 488
           + 
Sbjct: 467 IE 468


>gi|172062460|ref|YP_001810111.1| DNA-directed DNA polymerase [Burkholderia ambifaria MC40-6]
 gi|171994977|gb|ACB65895.1| DNA-directed DNA polymerase [Burkholderia ambifaria MC40-6]
          Length = 641

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 164/611 (26%), Positives = 282/611 (46%), Gaps = 32/611 (5%)

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            ++Y+  KYG +R A      + + ++ALR+ G+AL +  + VDR+ K      +    LQ
Sbjct: 1    MQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDQAIVDRVAKQHHWFDSRADLLQ 60

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
              A+     EA    P   +    + +L G  R  S H+ G VI    L++LVP+     
Sbjct: 61   RFAEAGLDPEA----PLNQQWAAFAAQLLGYPRPLSQHSGGFVISRGKLTRLVPVENAAM 116

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
             D  + Q++   IE  G++K D L L  L++++++LD +  +RG   +L  IP +D  T+
Sbjct: 117  EDRSIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISEKRGETFELQDIPAEDKATH 176

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNG 667
             +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGP+   +   +  R+ G
Sbjct: 177  EMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQGGMVHPFLRRRQG 236

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMD 726
             E +      ++  L  T GV I+QEQVMQ+A L +G+S  EAD LRRAM   K K  ++
Sbjct: 237  LEPVTFPSEGMEKALARTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKRKGGLE 296

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
               ER +SG  + G  +  A +IF  +  F +YGF +SHAA++A++ Y +AW++ H P  
Sbjct: 297  PYHERLVSGMLERGYDREFAESIFAQIKGFGEYGFPESHAASFALLVYSSAWLRRHEPAV 356

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI----YYSLAAI 842
            FLAA +  +        +  QDAR+  ++++P  VN    D  +             + +
Sbjct: 357  FLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSAIEGPATSAPVRLGFSLL 416

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            +G+    A  I  A A +PF  + D   R    + + + L              +R   L
Sbjct: 417  RGMRQDVAGRIELARAARPFVDIADLARRARLDRHDLQAL--------------ARANAL 462

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            +SL    + A            ++    +   +    L + S  +  V    + R +GF 
Sbjct: 463  RSLAGGNRRAALWLAAAAVPDRDLLRGTERDDAV-PALPRASEGHEIV---TDYRAMGFT 518

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
               HPL + +  L    ++  E+      G   R   +V  +Q+  T  G  + ++T  +
Sbjct: 519  LGRHPLALLRERLALDRLQSAEQLATLRSGQLARACGLVTVRQRPGTANG--VLFMTLED 576

Query: 1023 PAKEYEANFFP 1033
                     +P
Sbjct: 577  ETGHVNVILWP 587


>gi|329770059|ref|ZP_08261454.1| hypothetical protein HMPREF0433_01218 [Gemella sanguinis M325]
 gi|328837370|gb|EGF87000.1| hypothetical protein HMPREF0433_01218 [Gemella sanguinis M325]
          Length = 686

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 226/733 (30%), Positives = 380/733 (51%), Gaps = 62/733 (8%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           ++ +LQVHS+Y LL   +    +  K+  D Q ++ ITD   L+ A++  + A    +  
Sbjct: 2   TYYNLQVHSAYDLLNSTIKYTELFSKLKKDGQDSVVITDP-TLYGAIKAYKIAKKFDVNL 60

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           + G ++ +    +    N             +L    E + RL+E+ +   + ++ + S+
Sbjct: 61  VHGLEIKLGYVISFLKFN-------------ILCKNTEMFYRLLEIST--MIENKVEWSI 105

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
              +  L++   + +I++       ++ ++  +        L  F   F           
Sbjct: 106 EKLVEELKKSKEDFVIIVIDELRDSMEFSYLND-------VLKGFDFYF----------- 147

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            G++   ++ +    Y +   +V T  S +L+ + Y+   V  A+  +  ++  +    T
Sbjct: 148 -GFNEKFDASL----YQYYENVVYTKPSFYLNNDQYQQVIVSRAIRDNAKLNITELTTTT 202

Query: 250 PDHYLKNRSEMVSIF--------SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              +++ + +  ++         S L +AL    E+  +C + L      LP++   + +
Sbjct: 203 GSKFVRTQEDFKNLLNVENPLLKSMLEKALVKQAEVIGKCRYNLGFKGYHLPKYKYGKDE 262

Query: 302 DIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
           D+ +     + LR     G + +L    + K      Y++R ++EL +I  M F+ YFLI
Sbjct: 263 DVFQNFSSRDYLRYLVQKGAKEKLFGKDLYK------YKKRYEYELKIIDEMGFNDYFLI 316

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V DF+++AK N I VG GRGS AGS+  Y L IT+ DPL ++LLFERFLN +R+SMPD D
Sbjct: 317 VYDFVKYAKSNGILVGAGRGSAAGSLVCYLLNITEADPLEYNLLFERFLNKERISMPDID 376

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           IDF   RRDEVI+YV+ KYG ++VAQIITF + Q+K+A R+  R LQ      D   K I
Sbjct: 377 IDFQDTRRDEVIKYVEEKYGEDKVAQIITFTTFQSKSAARESARILQFD----DNSLKFI 432

Query: 480 PNDPAHPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR- 537
            ++ +   +L+   + S   R          R   I+  LE L ++ S HAAG+VI D  
Sbjct: 433 SSNISSTRTLKECYESSEPLRNFVNESTINRRWFSIALSLESLPKNPSVHAAGVVISDNN 492

Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
           PL +  P+     +   +TQ+ M  +E  GL+K DFLG++ LT++   ++ + +   + D
Sbjct: 493 PLMKYAPLAESNMTKY-LTQWTMDDVESVGLLKIDFLGIRYLTMVSSIVEQIKKENPEFD 551

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           ++ I + D + Y+L     T GIFQ ESSGM++ L  ++P    DI+A+ +LYRPGP+  
Sbjct: 552 ITKINYKDPKVYNLFAEGRTEGIFQFESSGMKEKLRLLKPTEFNDIVAMNALYRPGPMAQ 611

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           I  Y  RK+G+EK+   HP ++ +LK+T GVI+YQEQ+M IA   +  SL+EAD +RRA+
Sbjct: 612 IETYIRRKHGEEKVNYPHPNLEKILKDTYGVIVYQEQIMLIAVNFAHMSLNEADNMRRAV 671

Query: 718 GKKIKEEMDKQKE 730
            KK K+      E
Sbjct: 672 SKKKKKIWSIMDE 684


>gi|226327032|ref|ZP_03802550.1| hypothetical protein PROPEN_00893 [Proteus penneri ATCC 35198]
 gi|225204250|gb|EEG86604.1| hypothetical protein PROPEN_00893 [Proteus penneri ATCC 35198]
          Length = 588

 Score =  486 bits (1250), Expect = e-134,   Method: Composition-based stats.
 Identities = 180/457 (39%), Positives = 266/457 (58%), Gaps = 11/457 (2%)

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            D L +    VD+S I   D  ++ +L    T  +FQLES GM+  ++ ++PDC ED+IAL
Sbjct: 3    DELKKSLEPVDISAISLTDQRSFDMLQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIAL 62

Query: 647  VSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIA 699
            V+L+RPGP+ + +   + +RK+G E+I        H  + P+L+ T GVI+YQEQVMQIA
Sbjct: 63   VALFRPGPLQSGMVDNFIDRKHGVEEISYPDVKWQHESLQPVLEPTYGVILYQEQVMQIA 122

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q+L+GY+L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA Y
Sbjct: 123  QVLAGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAIKNGVDGELAMKIFDLVEKFAGY 182

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP
Sbjct: 183  GFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPP 242

Query: 820  SVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKL 877
             +N+    F V D     Y + AIKGVG      I+EA      F  + D C+R ++KKL
Sbjct: 243  DINSGLYHFHVNDEGEIVYGIGAIKGVGEGPIEAIVEARQQGGHFKDIFDLCARTETKKL 302

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSD 936
            NRRV+E L+ +GA D  G  R  L+ SL++  K A    K       ++F    +     
Sbjct: 303  NRRVMEKLIMSGAFDKLGPHRAALMSSLEDALKAADQHAKAEAIGQSDMFGVLAEAPEQV 362

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNI 995
            + +          V  E E+  LG Y +GHP+  Y   + +       ++ V T RG  +
Sbjct: 363  ERSYANIPKWPDQVVLEGERETLGLYLTGHPITRYLKEIERYAAGTRLKDLVPTPRGQMV 422

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++A +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 423  KVAGLVLASKVFTTKRGNRIGVCTLDDRSGRLEIMLF 459


>gi|255658412|ref|ZP_05403821.1| DNA polymerase III, alpha subunit [Mitsuokella multacida DSM 20544]
 gi|260849748|gb|EEX69755.1| DNA polymerase III, alpha subunit [Mitsuokella multacida DSM 20544]
          Length = 1329

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 185/1007 (18%), Positives = 338/1007 (33%), Gaps = 213/1007 (21%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--ACAAGIQP 69
            V L  H++ S ++  +S+ +++        PA+A+TD   + +  + ++   +C + ++ 
Sbjct: 422  VELHAHTTMSSMDAVVSVKDLIKTADRWGWPAVAVTDHGVVQAFPDAAKALSSCKSDLKV 481

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G +  +  +D+L+              I++L     G + L +LVS  +L     +  
Sbjct: 482  IYGMEGYLVQKDHLQK---------RANHIIMLAKNPNGLRNLYQLVSLAHLR-YFHRQP 531

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    ++E    GL++ +   +G + RA     +      + +F      +   N    
Sbjct: 532  RLPKHIIEEY-RSGLLIGSACEAGELIRAIEEQRTDEELMEIASFYDYLEIQPIHNNDFL 590

Query: 190  RGYDRY-----------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +  D+Y              +V ++A     PLVAT +  FL+ ED     +LM      
Sbjct: 591  KRSDKYPDIQTDEDLIQINLKVAEIAKKLGKPLVATCDVHFLNPEDSIYRAILMKGKGF- 649

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFI 296
                 D   + P  YL+   EM+  F  L E  A E  V   R+ +  ++   PI     
Sbjct: 650  -----DDAELQPPLYLRTTDEMLKEFEYLGEEAAYEAVVTNPRKIADQIERFKPIPDDLY 704

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              +        + E+R  +         +         +    RL  EL  I    FS  
Sbjct: 705  SPQIPGA----DEEIREMSYKKARALYGENL------PKIVEDRLKQELKPIIGHGFSVL 754

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------- 399
            +LI    ++ +  +   VG  RGS   S  A    IT+++PL                  
Sbjct: 755  YLIAQRLVKKSNDDGYLVG-SRGSVGSSFIATMTGITEVNPLPPHWRCPHCQYSKFITDG 813

Query: 400  ------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                      + F  FL  D   +PD D++F    +    +Y +
Sbjct: 814  SYGCGYDLPDKVCPVCGTPLIKDGHDIPFAVFLGFDGDKVPDIDLNFSGAYQPVAHKYTE 873

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G + V +  +  ++  K A   V +                                
Sbjct: 874  ILFGKDNVYRAGSIQTVADKTAFGYVKK-------------------------------- 901

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS-- 551
              F E +     +  + +++    G+      H AGI++  R   +    P+        
Sbjct: 902  --FYEEKGVKKHISYIDKMAHGCMGVKSTTGQHPAGIMVVPRNMDVHFFTPIQHPANDMN 959

Query: 552  -DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
                 T F+   I  + L+K D LG    T+++   D         D   IPFDD  T  
Sbjct: 960  CGTITTHFDYHSI-SSRLVKLDILGHDDPTVIKMLEDL-----THRDPKTIPFDDAATMS 1013

Query: 611  LLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            +  +               GT GI +  +   RQ ++  QPD   D++ +        + 
Sbjct: 1014 IFNSTTALGVTPEELGATSGTFGIPEFRTPFTRQMIDDTQPDVFSDLVRISGFSHGTDVW 1073

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVL 713
                            +   LI       +  I  ++ +M       +    S    + +
Sbjct: 1074 LG--------------NAQDLIRSGQCTIKNAISARDDIMMYLIHNGIDPLLSFKTMEKV 1119

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+      +   D   E    G    GI +    +  ++      Y F ++HA AY +++
Sbjct: 1120 RKG-----RGIADDVVEILRKG----GIPEWFIESCQKI-----KYLFPRAHATAYVMMA 1165

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEK-------------------------------- 801
            Y+ A+ K HYP+ + AA  ++     +                                 
Sbjct: 1166 YRIAYCKVHYPLAYYAAYFSIRAAEFDANVIARGKDYVGQQIKELEAMGKEKKLDAKQNA 1225

Query: 802  ---IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
               + +   +            +     D F +  N +   +AA+ G+G   A+ I+EA 
Sbjct: 1226 TLIVLQLAWEMYLRGYSCERVDLYRSGADKFIIDGNALLPPIAALAGMGQKAAQGIVEAR 1285

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
             +  F S+ED   R    K N  +L S    G LD    S    L S
Sbjct: 1286 KEGAFTSIEDLRRRSGISKTNIEILRS---HGCLDGMSESDQIALFS 1329


>gi|300984944|ref|ZP_07177209.1| DNA polymerase III, alpha subunit [Escherichia coli MS 200-1]
 gi|300306594|gb|EFJ61114.1| DNA polymerase III, alpha subunit [Escherichia coli MS 200-1]
          Length = 460

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 192/471 (40%), Positives = 276/471 (58%), Gaps = 21/471 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++    LP+F   +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP  P   +
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPGPGMTL 455


>gi|297617183|ref|YP_003702342.1| DNA polymerase III subunit alpha [Syntrophothermus lipocalidus DSM
            12680]
 gi|297145020|gb|ADI01777.1| DNA polymerase III, alpha subunit [Syntrophothermus lipocalidus DSM
            12680]
          Length = 1218

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 190/977 (19%), Positives = 349/977 (35%), Gaps = 181/977 (18%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S L+G + + ++L+++A     A+AITD   + +  E    A   GI+ + 
Sbjct: 319  VELHLHTVMSTLDGVVKIKDLLERVAEWGHKAVAITDHGAVQAFPEAYDYAKLKGIKLVY 378

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +      K              I++LV   EG + L  LVS+ +L     ++ RI
Sbjct: 379  GMEGYLVDDLRQK----------QAYHIIILVRNREGLKNLYRLVSKSHLEG-FYRNPRI 427

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVN 185
                L E+  EGLI+ T   +G +   +  N S    +R+ +F      + L  +   V 
Sbjct: 428  LRKQLVEL-REGLILGTACEAGELITGYLQNKSDDELERIASFYDFLEIQPLMNNEFLVR 486

Query: 186  LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
              R   ++        +V+L     LP++AT +  FL         +L A          
Sbjct: 487  EGRVSSFEDLIQMNRYIVELGERLNLPVIATGDVHFLDPHHEVFRRILQANKGYED---- 542

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                     YL+   EM++ F+ L   +A +  V    R    ++   P+          
Sbjct: 543  --AEAQAPLYLRTTGEMLAEFAYLGKEKAYQVVVINPNRLVEGVEDLQPVPDGNFFPSIP 600

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              ++E +     KA       L           +  R+RL+ EL  I   KFS  +LI  
Sbjct: 601  GAEEEIKTLAWEKAYQMYSRPL----------PELVRERLERELAAIIDNKFSVLYLIAH 650

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------- 398
              ++ + ++   VG  RGS   S+ A+ + IT+++PL                       
Sbjct: 651  KLVKRSNEDGYLVG-SRGSVGSSLVAFLIGITEVNPLVPHYRCPNCFYTEFVNDGSVECG 709

Query: 399  ------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  +   +PD D++F  D +    +YV+  +G 
Sbjct: 710  VDLPDLTCPRCGQRLVRDGHDIPFETFLGFEGDKIPDIDLNFSGDYQPRAHQYVEEIFGS 769

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E V +  T  +L   +A+  V                             A  +    R+
Sbjct: 770  EHVFRAGTINTLAEASAIGMVKNY--------------------------AEKNGLHLRK 803

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPM---YRDVRSDLPV 555
                      +L +++ L G+ R    H  G+++    R + +  P+        S +  
Sbjct: 804  --------GEVLRLARGLAGVKRTTGQHPGGLMVVPRERDVHEFTPLNYPANKAESGIIT 855

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T F+   I +  L+K D LG    T+++   D    R +      I  DD ET  L +  
Sbjct: 856  THFDYHSISE-RLVKLDILGHDDPTMIKVLEDMTGYRAL-----DISLDDRETMRLFSGV 909

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+             G+       +  ++ + RP     +V  +   +G +  + + 
Sbjct: 910  EPLGVTPEAIRSA-VGTYGVPEFGTRFVRQMLEVTRPQTFGELVRISGLSHGTDVWLNNA 968

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI---KEEMDKQKER 731
              LI+      + VI  ++ +M    +  G    +A  +   + K     +EE+   +E 
Sbjct: 969  QELIENGTAPLKEVIATRDDIMT-FLIHKGMDKKQAFRIMENVRKGKGLVREEVQAMQEY 1027

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
             I                +    +   Y F ++HA AY +++++ A+ K +YP EF AA 
Sbjct: 1028 RIP-------------AWYIDSCQKIKYMFPRAHAVAYVMMAFRIAYYKVYYPREFYAAF 1074

Query: 792  MTLEMDNV---------EKIKKFC------------------------QDARQFNIQIMP 818
             ++  ++          +K+++                           +      + +P
Sbjct: 1075 FSVRAEDFDAEVILGGYDKVRQRVVEIEKMNSNAAPKDRKLLPVLEVALEMYARGFRFLP 1134

Query: 819  PSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
              +       F V    +    +A+ G+G   A  I+EA     F S+ED   R    + 
Sbjct: 1135 VDLLLSDATRFLVTKKGLLLPFSALPGLGEKAALSIIEARKLGTFASIEDLQFRAGVSRA 1194

Query: 878  NRRVLESLVFAGALDCF 894
                L+     G L   
Sbjct: 1195 VVDTLKRN---GCLHDL 1208


>gi|12045116|ref|NP_072927.1| DNA polymerase III, alpha subunit [Mycoplasma genitalium G37]
 gi|255660357|ref|ZP_05405766.1| DNA polymerase III, alpha subunit [Mycoplasma genitalium G37]
 gi|2494193|sp|Q49405|DPO3A_MYCGE RecName: Full=DNA polymerase III subunit alpha
 gi|1045954|gb|AAC71482.1| DNA polymerase III, alpha subunit [Mycoplasma genitalium G37]
 gi|166078627|gb|ABY79245.1| DNA polymerase III, alpha subunit [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 874

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 251/895 (28%), Positives = 434/895 (48%), Gaps = 68/895 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV+L  +S Y+ L  ALS   +++    DQQ A+AITD  NLF A+EF        I+PI
Sbjct: 2   FVNLHTNSYYNFLNSALSPKKLVNLAINDQQKAVAITDP-NLFGAVEFFITCKQNNIKPI 60

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG  L ++ Q N                ++L+  + +G+Q L ++      L+       
Sbjct: 61  IGLNLTVEYQKNDVK-------------LLLIAKSNKGFQTLNKIALIQQKLE------- 100

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              S + ++    +I+ +           + ++ +   +     K +  ++  + +  + 
Sbjct: 101 -INSLVDQLTDIAVIICS--------LTTWKSTYKDVYQA----KGIEINQTPIAILANA 147

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                  S  V L     L  +  N +  ++  D++    L  ++ +   + K +  + P
Sbjct: 148 VNCEKTNSDQVVL---TVLKQMKQNQTGKITTFDWDLKQKLNQISIN--ENLKVKSEIQP 202

Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               K   +   +FS+    L N  ++  RC   L+         ++     +   +   
Sbjct: 203 FLDQKTAQQ---LFSETE--LNNLNDLVNRCELDLE--------HLKAASLSLTDNDAAV 249

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           L +     L+  L +    +  + + Y+ RL+ ELNVI ++ F+ YFL+V D + +A K 
Sbjct: 250 LESLCQTNLKQFLDKN---QDLNKKAYQLRLEKELNVINKLNFASYFLVVNDLVNYAFKK 306

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
           +I +G GRGS  GS+ A+ L IT IDP++  L+FERF++  R  +PD DID  +++R E+
Sbjct: 307 DILIGSGRGSAVGSLVAFLLNITKIDPVQHQLIFERFISTHRQDLPDIDIDIMENKRAEM 366

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
           I Y+  KYG E  AQI+TF   + ++A+++V +     Y   D +  ++P D     +  
Sbjct: 367 INYLFEKYGKENCAQIVTFQRFKTRSAVKEVAKLFN-DYGISDMILGVLPKDQTITFTDL 425

Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
              +DS  +   L       ++E++  +    R +S HA+GIVI    L + +P+ + + 
Sbjct: 426 KATEDSALQ---LCLQQFGLIVELALAIVDFPRQSSIHASGIVIASNSLIKTIPLLQ-LD 481

Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD--LSLIPFDDHET 608
           ++  +TQ +M+W+    L KFD LGL  LT++   +  +      V+  L+ I + D  T
Sbjct: 482 NNHFLTQVSMEWLSFFNLNKFDLLGLINLTMISDVITQIKPSNQTVNQFLNTISWTDQNT 541

Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
           +  L  + TLGIFQLES GM++ L  ++P  I  +  +++LYRPG  DNI ++ NR +  
Sbjct: 542 FINLVNEDTLGIFQLESFGMKKLLVQIKPKTINQLAIVLALYRPGAQDNINLFINRLHNG 601

Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
                I P I P++K T GV+I+QEQ++ I ++++ YSL EAD  RRA+ KK  + + K 
Sbjct: 602 YDQSDIDPRILPIVKNTYGVLIFQEQIINIVKVVANYSLEEADSFRRAISKKDVKLIQKN 661

Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
           K  F   A +N         IF  + +FA+YGFN SHA  YA++SY TAW+KT+YPV F 
Sbjct: 662 KRNFFERAVQNNFDLKTTTKIFSYIERFANYGFNLSHALGYALLSYWTAWLKTNYPVYFY 721

Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT- 847
              +     + +K K   +   +  I+I PP +N    +  + + +IY  L  IKG+   
Sbjct: 722 LWLLNHFQSSKDKQKLIIRTLEKSGIEIYPPLLNKAQPNSVIENKKIYLGLNLIKGINDR 781

Query: 848 -----TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
                   +H+++   +     +  +C       +  + L  L   G  D F Y+
Sbjct: 782 YIQNLQKVQHLIQTQNNLQLTDVVSWCLDKTIGDIPLKDLLLLKTMGCFDFFEYT 836


>gi|238060269|ref|ZP_04604978.1| error-prone DNA polymerase [Micromonospora sp. ATCC 39149]
 gi|237882080|gb|EEP70908.1| error-prone DNA polymerase [Micromonospora sp. ATCC 39149]
          Length = 535

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 174/530 (32%), Positives = 276/530 (52%), Gaps = 26/530 (4%)

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                 E + LR   +AG   R          H + YR +LD EL +I  + F GYFL+V
Sbjct: 1   MPAGHTEMSWLRALTMAGARERYG----PPEAHPEAYR-QLDHELRMIDELGFPGYFLVV 55

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            D + + ++ +I    GRGS A S   YAL IT++D +R  LLFERFL P+R   PD D+
Sbjct: 56  YDIVAFCRRADI-YCQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDV 114

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           D   DRR+EVI++V  +YG E  AQ+    S + ++A+RDV +A      Q D   + I 
Sbjct: 115 DIESDRREEVIQHVYARYGREHAAQVANVVSYRPRSAVRDVAKAFGFSPGQQDAWSRQID 174

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              +                +  A+   ++++  + +L+   RH   H+ G+VI DRP+ 
Sbjct: 175 RWGSV--------------ASVDAEDIPEQVVAYADQLQTFPRHLGIHSGGMVICDRPVI 220

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
           ++ P+         V Q++       GL+KFD LGL  L+ L    D +      +DL  
Sbjct: 221 EVCPVEWGRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYGYDMIG---TTLDLGD 277

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI-- 658
           +  DD E Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI     
Sbjct: 278 MTLDDPEVYDMLCRADSVGVFQVESRAQMATLPRLKPREFYDLVVEVALIRPGPIQGGSV 337

Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM- 717
             Y  R+NG+E +   HPL+   L++T GV ++QEQ+MQ+A  L+G+  + AD LRRAM 
Sbjct: 338 HPYIRRRNGQEPVTYPHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAGADQLRRAMG 397

Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            K+  + M +  +R  +G ++ GI+  +A +++  L  FA YGF +SHA ++A + Y ++
Sbjct: 398 AKRSVQRMARVADRLYAGMAERGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASS 457

Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
           W+K ++P  FLAA +  +       +    DAR+  +++  P VN     
Sbjct: 458 WLKRYHPGPFLAALLGAQPMGFYSPQTLVDDARRHGVEVRRPDVNASGAK 507


>gi|255316457|ref|ZP_05358040.1| DNA polymerase III DnaE [Clostridium difficile QCD-76w55]
          Length = 774

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 187/649 (28%), Positives = 313/649 (48%), Gaps = 69/649 (10%)

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            + AK A+ D  R           + KLIP+ P   +  +A+ + +  ++    +  V  +
Sbjct: 1    MGAKGAINDTARIWNKDTRFSSEISKLIPSRPNITID-EALKESTGLKQLYDGNLEVRDI 59

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP----MYRDVRSDLPVTQFNMKWIEKAG 567
            ++ ++K+EGL + +  HA GI+IG   ++   P      R+      VTQ+ M+  E  G
Sbjct: 60   IDKAKKIEGLLKSSGVHACGIIIGREAITNFCPQSLVTNRETGKKEWVTQYTMEECESIG 119

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFL LKT+T+L +S++ + +    K+ ++ +P +D E Y  +    T G+FQ+ES 
Sbjct: 120  LLKMDFLALKTMTILNESIEDINESYGQKLAVNNLPVNDVEVYEHIFKGNTRGVFQIESP 179

Query: 627  GMRQALEGMQPDC----------------------------IEDIIALVSLYRPGPIDNI 658
            GM   ++ +  D                              E +IA +SLYRPGP++ I
Sbjct: 180  GMTGFMKNLFQDVPDFLNSISNSSLTKEQIEKKKEEFGDILFERLIAGISLYRPGPMEEI 239

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y N     E+I    P ++ +LK T G+IIYQEQV+ I   L+G+S  + D +R+AMG
Sbjct: 240  PNYINNMINPEQIHYDTPELESILKNTYGIIIYQEQVINIVIKLAGFSKGQGDWIRKAMG 299

Query: 719  KKIKEEMDKQKERFISG-----------------ASKNGISKTIAVNIFELLAKFADYGF 761
            KK  E + + +  FI G                    N IS+ +A + +  +  F+ Y F
Sbjct: 300  KKKDEILKEYEPYFIYGSGDAKDKVTKKPLNIVGCINNEISEDVAKSTWNKMKDFSKYAF 359

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NKSH   Y+++SYQTAW+  +YPV F+ +++ + + N  K K F     + NI ++PPS+
Sbjct: 360  NKSHGGGYSLLSYQTAWISHYYPVIFMKSNLNVYITNTNKCKAFLAYCSRKNITVLPPSI 419

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR-VDSKKLNR 879
            N     F V +N I +    IK +G ++   I E  ++   F + +DF  R V  +K ++
Sbjct: 420  NKSNKKFSVENNCIRFGFQGIKNLGCSSELIIKERESERGLFKNFQDFIERMVKYQKTDK 479

Query: 880  RVLESLVFAGALDCF-GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            RV+E+L+FAGALDCF   +R + L+ + +I + ++  +K   N   ++F  E  +   +I
Sbjct: 480  RVIENLIFAGALDCFKDSTRKEKLEIIPSILESSKLDKKKNINGQISLFDIEDFSGIKEI 539

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------- 991
             + K    N     E E+ V   Y S HPLD +  +L K  I    + ++          
Sbjct: 540  VIPKLGEFNKDYLLEKEKEVANIYISAHPLDNFMDLLEKEDIVEIVDLISEDDEYNKKDN 599

Query: 992  --------GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                    GN I +A +V   Q K +++          +   E +   F
Sbjct: 600  ENYLTDFVGNTIYVAGIVKDVQIKYSKRNKPFYIFNLEDKTGEIKCVCF 648


>gi|254716293|ref|ZP_05178104.1| error-prone DNA polymerase [Brucella ceti M13/05/1]
 gi|261218072|ref|ZP_05932353.1| error-prone DNA polymerase [Brucella ceti M13/05/1]
 gi|260923161|gb|EEX89729.1| error-prone DNA polymerase [Brucella ceti M13/05/1]
          Length = 605

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 160/637 (25%), Positives = 269/637 (42%), Gaps = 45/637 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +  +   S++S L GA     ++++  A     I I D N L   +    +        
Sbjct: 3   PYFEMAAASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQ-------- 54

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                 DI  +   ++    +  F    P +V+       Y +L  L++        K  
Sbjct: 55  ----WKDIRKESGFRLFIGCRLSFIDGTPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGE 110

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             +  + L     +  I +        D A           RL    +     +++ L  
Sbjct: 111 CHLEWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTM 160

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R  
Sbjct: 161 PHQGQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLL 220

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +LK   EMV +F D PEA+  T +     +F L       P           K 
Sbjct: 221 EKNAERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KT 276

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +  L +    G         I         +  ++ EL +IAR+++  YFL V D +  
Sbjct: 277 AQQHLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTH 331

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A++  I +  GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +R
Sbjct: 332 AREKGI-LCQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHER 390

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       
Sbjct: 391 REEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGG 450

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           +  Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+ 
Sbjct: 451 IDRQHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIG 506

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VDLSL 600
                     +++   I++ GL+K D L L  LT ++K+ D + Q   +      + L+ 
Sbjct: 507 PAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLAS 566

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
           +P +D   Y +L    +LG+FQ+ES      L  ++P
Sbjct: 567 LPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRP 603


>gi|254247156|ref|ZP_04940477.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
 gi|124871932|gb|EAY63648.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
          Length = 658

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 165/626 (26%), Positives = 274/626 (43%), Gaps = 48/626 (7%)

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            +I+++  KYG +R A      + + +  LR+ G+AL +    VDR+ K           L
Sbjct: 1    MIQHIYKKYGKDRAALAAAVSTYRPRGVLRETGKALSVDPMLVDRVAKGHRWFDGSRDLL 60

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q  A          A P +    E++ +L    RH S H+ G VI    L++LVP+    
Sbjct: 61   QQFASTG----LDPATPIIQTWAELAGRLLNFPRHLSQHSGGFVISRGKLTRLVPVENAA 116

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------AQRGVKVDLSLIPF 603
                 V Q++   +E  GL+K D L L  L+ L ++ D        A+ G    L  IP 
Sbjct: 117  MDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPAKDGKPFTLKHIPQ 176

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVY 661
            DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI       Y
Sbjct: 177  DDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRNYYDLVVQVSIVRPGPIQGGAVHPY 236

Query: 662  NNRKN---GKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
              R+    G+EK  +      +  +L  T GV I+QEQVMQIA + +G++  EAD LRRA
Sbjct: 237  LKRRRIVAGEEKGEVTYPSDALKEVLVRTLGVPIFQEQVMQIAIVAAGFTPGEADDLRRA 296

Query: 717  MGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M   K K  ++K +++ ISG  +   ++  A  IFE +  F +YGF +SHAA++A ++Y 
Sbjct: 297  MAAWKRKGNLEKYQDKIISGMLERNYTREFAEQIFEQIKGFGEYGFPESHAASFAKLAYA 356

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-------- 827
            ++W+K H P  FLAA +  +        +  QDA++  ++++P  V     +        
Sbjct: 357  SSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHRVKVLPIDVTQSGWEASLEALPD 416

Query: 828  --FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                 G   +   L+ ++G+    AR I  A    PFDS++    R   ++  R +    
Sbjct: 417  QPPPHGQPAVRLGLSLVRGLSEAAARRIEAARTAGPFDSVDSLARRAQLER--RDLEALA 474

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
                     G+ R  L Q++                   ++ A       ++  L   S 
Sbjct: 475  AANALATLAGHRRDALWQAV-------------AAAPERDLLAAAPIDEVEQPALGAPSE 521

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +  +    +    G   + HP+ + +P LR   +    E      G   R   +V+++Q
Sbjct: 522  ADDIL---ADYHTTGLTLNRHPVALLRPALRAQRLSSAAELRDRPDGRLARACGLVIARQ 578

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANF 1031
               T KG  + ++T  +         
Sbjct: 579  MPGTAKG--VMFMTLEDETGCVNVIV 602


>gi|188586065|ref|YP_001917610.1| DNA polymerase III, alpha subunit [Natranaerobius thermophilus
            JW/NM-WN-LF]
 gi|179350752|gb|ACB85022.1| DNA polymerase III, alpha subunit [Natranaerobius thermophilus
            JW/NM-WN-LF]
          Length = 1210

 Score =  476 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 174/978 (17%), Positives = 349/978 (35%), Gaps = 181/978 (18%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  H+  S L+   S   +++  A     AIAITD   + S  E  + A   GI+ + 
Sbjct: 310  IELHAHTRMSTLDATCSATELVETAADWGHKAIAITDHGVVQSFPEAFEAAQEKGIKVLY 369

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +          +         T    +++    +G Q L  L+S  +L     +  RI
Sbjct: 370  GVECY--------LVEDEDNYKDTSYHCIVIAKNKQGLQDLYRLISESHL-YYFYRFPRI 420

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF------GDRLYVN 185
                L E+  E L++ +    G + +A     S    + +  +           +   + 
Sbjct: 421  PKKRLSEV-RENLLIGSACERGEVIQALLNGKSSAELEEIAGYYDYLEIQPAGNNEFLIR 479

Query: 186  LQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
               +   +       +VV+LA   + P  AT++  FL   D     +LMA      +SQ 
Sbjct: 480  KGVYESQEDLHNLIKEVVKLARKIDKPFCATSDVHFLHPWDKNYRKILMAGQGFDDLSQ- 538

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                  P  Y+K   EM++ F  L E  A +  +E   +    +    P+          
Sbjct: 539  ------PPLYMKTTDEMLTEFDFLGEEDAYKAVIECPDQIQNQVDELVPVPQDLYTPHIP 592

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                  E+++   A +  +    +         +  + RL+ EL  I    ++  +LI  
Sbjct: 593  GA----EDQITEMAYSKAKQLYGE------PLPEIVKTRLEEELKSIVDQGYAVIYLISH 642

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------- 399
              ++ + ++   VG  RGS   S+ A    IT+++PL                       
Sbjct: 643  KLVKKSLEDGYLVG-SRGSVGSSLVATMCDITEVNPLPPHYMCPNCQHSEFIQDGSVGSG 701

Query: 400  -------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                               + + F  F+      +PD D++F  + +     Y +  +G 
Sbjct: 702  VDLRDKNCPHCNTDMNKDGYDIPFAVFMGFHGEKVPDIDLNFSGEYQPIAHEYTEELFGK 761

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E V +  T G++  K A   V               K   ND                  
Sbjct: 762  EHVFKAGTIGTIAEKTAFGFV---------------KGYVNDNGI--------------- 791

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYR---DVRSDLPV 555
                +     +  +     G+ R    H  G++I      + +  P+ R   D ++++  
Sbjct: 792  ----NCRQSEVNRLVSGCTGVKRTTGQHPGGLMIVPEGHDIHEFCPIQRPADDTKTEVMT 847

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T F+   I    L+K D LG    T++     ++ +    +D   I  DD +T  + ++ 
Sbjct: 848  THFDYNAISD-RLLKLDILGHDVPTII-----YMLESITGLDPLKIRLDDPDTIKIFSSP 901

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-I 674
              LG+   +    +    G+       +  ++   +P     ++  +   +G +  ++  
Sbjct: 902  EPLGVGPEDID-CQVGTLGIPEFGTRFVRQMLEDTKPQTFSELIRISGLSHGTDVWLNNA 960

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              +I   + E   VI  ++ +M       +    + +  + +R+   K + +E+      
Sbjct: 961  QDIIAEGIAELGDVISTRDDIMVYLMYKGVDKKDAFTIMEKVRKG--KGLSDEL------ 1012

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
                  KN + +    + +        Y F K+HA AY ++S++ A+ K  YP  F A  
Sbjct: 1013 ------KNTMKEAGVPDWYLDSCLKIKYLFPKAHAVAYTMMSFRIAYYKVFYPEAFYATF 1066

Query: 792  MTLEMDNV------------EKIKKFCQD------------------ARQF---NIQIMP 818
             +++ ++             ++  K+ ++                  AR+     +Q++P
Sbjct: 1067 FSVKTEDFNSNMIVKGLDAVDEQIKYVEERGVSATPKEKSELVVLEVAREMFQRGVQVLP 1126

Query: 819  PSVNTPCVD-FKVGDNRI-YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
             S+     + F+V  +      L  I G+G++ A+ I++A  ++ F S ED   R     
Sbjct: 1127 VSIYESDSEKFQVTQDGYLRPPLITIPGLGSSVAKQIVKAREEREFSSKEDLRKR---GG 1183

Query: 877  LNRRVLESLVFAGALDCF 894
            +++ V+E L   G L   
Sbjct: 1184 VSKSVIEPLEEHGCLKDL 1201


>gi|29567055|ref|NP_818618.1| gp80 [Mycobacterium phage Barnyard]
 gi|29425780|gb|AAN02134.1| gp80 [Mycobacterium phage Barnyard]
          Length = 1111

 Score =  472 bits (1216), Expect = e-130,   Method: Composition-based stats.
 Identities = 229/985 (23%), Positives = 396/985 (40%), Gaps = 116/985 (11%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV    H+++S  +     +    +       A+  ++  N+    +F ++    GI+PI
Sbjct: 3   FVSFHTHNTFSYADALGMPSIHAARAEELGMWALGTSNHGNVNDHAQFERECKERGIKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            GC++          T +          + +      GY+ L  ++++ Y+     Q   
Sbjct: 63  FGCEIYFSPVGEEDKTRR-------KTHLTIFAMNEIGYRNLNRIITQSYVD--AYQWPT 113

Query: 131 ICLSWLQEIGTEGLIMLTGGSS-------------GPIDRAFFFNSSQVAEKRLLTFKKL 177
           +    L E   EG+++L+G +              G        +    A +++  +  +
Sbjct: 114 VSWENL-EANHEGILVLSGCADSLLSCTLLGGKYLGEQRSHVTDDDMDNARRQIQRYLDV 172

Query: 178 FGDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           FG+R  + +QR   YDR R     + +L+    +PLVAT +  +   E  +   +L A  
Sbjct: 173 FGNRFALEVQRFPHYDRTRALNPAIAELSRDTGVPLVATADVHYPFPEQNKLQALLHAAR 232

Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL----------PEALENTVEIARRCSFIL 285
             +               L        I  DL           +A++ T  +A RC+  L
Sbjct: 233 WKSSPDFAAEASWEHSANLTYPLSDKEIHDDLVATGLDSADAWKAIQYTSILAERCTVEL 292

Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
               P+          D     + +L  +   G + R+AQ        A +Y +RL +E 
Sbjct: 293 PKAKPLRF------VCDKGLTAKQQLSREIAKGWKYRVAQRPDMARRKA-EYVKRLQYEF 345

Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---FSL 402
            +I    F  YFL+++D ++ AK  +I VGP RGS A S+ +Y L IT+IDPL      +
Sbjct: 346 KIITDKDFGDYFLVISDLVRRAKDKSIDVGPARGSAAASLISYLLRITEIDPLHPLFNKM 405

Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
           +FERF++P R   PD D+DF  ++R E+    +N YG E VA +        K  L+DV 
Sbjct: 406 VFERFIDPFRSDYPDIDLDFDDEKRWEIELDAKNLYGPENVASVANNTGYHGKNTLKDVA 465

Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE-------IS 515
           RA ++P      + K            +     S   E+    P +  L+E       ++
Sbjct: 466 RAYKLPLETFKAIAKR--TTVRVETDDKRNDSISDVLESYATHPEIAGLIEAHADKLAMA 523

Query: 516 QKLE-----GLYRHASTHAAGIVIGDRPLSQLVPMY-RDVRSD-----LPVTQFNMKWIE 564
             LE     G    +S HA G VI   P+  +  +Y +D  S      + V  ++ +  E
Sbjct: 524 VALESGNGDGNLHSSSVHACGFVIASDPIPDVCAIYLKDKGSGSKKTKVQVIPYDKRDAE 583

Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH------------------ 606
             G++K DFLG  T+  +     +      ++ LS+    D                   
Sbjct: 584 SLGMLKVDFLGSATMGAIGLMRKWSRVELEELYLSIYKDYDRWIRVQKRIKESGGKRVGF 643

Query: 607 ------ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
                            +GI Q E    RQ    +QP   +++ A  +L RPGP      
Sbjct: 644 TANRFDNILKRFRNDDVVGIMQFEGGTTRQVCRNVQPVDFDELAACTALSRPGPYYGGQY 703

Query: 659 VVYNNRKNGKEKIVSIHPL-IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
             Y   KNG++    IHP   D  +  T G I+YQEQ+M I + L+G+  +E   +R+ +
Sbjct: 704 TDYVAVKNGEKDWARIHPKGFDRHVAFTFGQIVYQEQIMWILRDLAGFDNAEVLRVRKII 763

Query: 718 GKKIKE-EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
           GKK+ E + +  K+ FI G ++  G+    A+ +F  +   A Y FN +HA +YA+I+Y 
Sbjct: 764 GKKLGEFQFEAIKQAFIDGCAQTCGVDPDTALRVFGAIRTAAGYAFNIAHAYSYALIAYW 823

Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKI---KKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
               K  +  EF A+++    D  ++I       QDA    I I    +N    +++   
Sbjct: 824 QMGFKMDHTTEFFASTLYKNGDGKKEIPRRTAVLQDAEAHRIGIGGWDLNLSGANWRPYY 883

Query: 833 NRI---------YYSLAAIKGVGTTTARHIMEASADKPFDSL---EDFC------SRVDS 874
           +                 I G+   TA+ I++   + P+  +   +D+        +   
Sbjct: 884 DHSAHSRNLGTVMPGFQQIPGIAEATAKAILDWRDNLPWQDIPTADDWHVLGLDNKKGGC 943

Query: 875 KKLNRRVLESL-VFAGALDCFGYSR 898
             + +   E +  F    D  G +R
Sbjct: 944 PGIGKDTAEKIAAFVSKPDALGVNR 968


>gi|114566429|ref|YP_753583.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei str.
            Goettingen]
 gi|114337364|gb|ABI68212.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei str.
            Goettingen]
          Length = 1212

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 192/999 (19%), Positives = 356/999 (35%), Gaps = 224/999 (22%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  HS  S ++G   ++ ++ + A  Q PAIAITD  ++ +  E  Q A    I+ I 
Sbjct: 313  IELHAHSKMSAMDGLTEVSMLVKRAAEWQHPAIAITDHGSIQAFPEAYQAAKKYKIKVIY 372

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +  +D  +              IVLL     G + L  LVS  Y+ D   +  +I
Sbjct: 373  GVEAYLVEEDKKER----------PYHIVLLALNQNGLKNLYHLVSISYM-DYFYRYPKI 421

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L +   EGL++ +   +G + +A    + +   + +  F        Y+ +Q    
Sbjct: 422  PRQQLIK-KREGLLLGSACEAGELFQAMVRGAKEKEIEEIAGFYD------YLEIQPLDN 474

Query: 192  YD--------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D              +    ++++L    + P+VAT +  FL         ++ A    
Sbjct: 475  NDFLVKEGSVKSREELQEINRRIIRLGQKLQKPVVATGDVHFLDPHHEIFRRIIQAGQG- 533

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPI 291
                 +D     P  Y ++  EM++    L E       ++N   IA     I  V    
Sbjct: 534  ----YEDAESQAP-LYFRSTDEMLAEMDYLSEEEARKVVIDNPALIAEMIEDIRPVPEGF 588

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             P  IE   +++ +   +  +  ++ G E+                  R+  ELN I   
Sbjct: 589  YPPKIESAAEEVTRISWD--KAHSLYGDEL------------PPIVESRIMKELNSITHH 634

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------- 398
             FS  +LI    ++ + ++   VG  RGS   S+ A+   IT+++PL             
Sbjct: 635  GFSVLYLIAHKLVEKSNQDGYIVG-SRGSVGSSLVAFLTGITEVNPLAPHYLCPFCRFSD 693

Query: 399  ----------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
                                         F + FE FL  +   +PD D++F  D +   
Sbjct: 694  FVVDGSANCGADLPERSCPDCGGKMHQDGFDIPFETFLGFEGDKVPDIDLNFSGDYQSRA 753

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
             +YV+  +G E V +  T  ++  K A   V + +                         
Sbjct: 754  HQYVEELFGQENVYRAGTISTIAQKTAYGFVKKYV------------------------- 788

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG--DRPLSQLVPMYRD 548
                    ++  L++  V+RL+   + + G+ R    H  G+++   DR + +  P+   
Sbjct: 789  ------ENKQIDLSNAEVNRLV---KGITGVRRTTGQHPGGLIVVPQDRDILEFTPLQHP 839

Query: 549  V---RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                 S +  T F    I +  L+K D LG    T+L++  D   ++   + L+      
Sbjct: 840  ADNKDSGVITTHFEYHAIGEQ-LVKLDILGHDDPTVLKELEDLTGRKAFSIKLNE----- 893

Query: 606  HETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             ET  L               +T GT GI +  +  +RQ LE  +P    +++ +  L  
Sbjct: 894  KETMKLFSGVEPLGLEAADILSTVGTYGIPEFGTRFVRQMLEATRPTTFSELVRISGLSH 953

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
               +      N  KNG   +  +    D ++       + ++Q                +
Sbjct: 954  GTNVWLNNAQNLIKNGTASLSEVICTRDDIMSYLIQKGLDKKQA-----------FKIME 1002

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +R+  G     E +    + +              + +    +  +Y F K+HA AY  
Sbjct: 1003 NVRKGNGL-NSGECELMAGQNVP-------------SWYIDSCQKIEYMFPKAHAVAYVT 1048

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVE---------------------------KIKK 804
            ++++ A+ K ++P++F A+  ++  ++ +                           K KK
Sbjct: 1049 MAFRIAYFKVYHPLQFYASFFSIRAEDFDSQTILAGYEALKKRIQEIEKAGLSASQKDKK 1108

Query: 805  FC------QDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +         P  +       F V DN +    +A+  VG   A+ I+E+ 
Sbjct: 1109 LLPVFEVAMEMYARGFTFRPVDIYKSDASKFLVVDNALLLPFSALPNVGAAAAQGIIESR 1168

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
                F S+EDF  R    K    VL +       DCF +
Sbjct: 1169 EGGSFISVEDFQQRSRLNKTAMEVLRN------FDCFNH 1201


>gi|284048706|ref|YP_003399045.1| DNA polymerase III, alpha subunit [Acidaminococcus fermentans DSM
            20731]
 gi|283952927|gb|ADB47730.1| DNA polymerase III, alpha subunit [Acidaminococcus fermentans DSM
            20731]
          Length = 1191

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 185/982 (18%), Positives = 345/982 (35%), Gaps = 181/982 (18%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  H+  S ++G   +  ++D        A+A+TD   + +      +A     +   
Sbjct: 277  VELHCHTKMSKMDGLTPIKELVDTAVRWGHKALALTDHGVVQAFPFAYDEAKDLAKKNGW 336

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK--QSV 129
              +L   ++  L  + + K  +     I+LL    EG + L  LVS  +L   G   +  
Sbjct: 337  ELKLIYGVEGYLCHSREDKKNY----HIILLAKNVEGLRNLYRLVSLSHLQYFGGKPKRP 392

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-----DRLYV 184
            R+    L +   +GLI+ +  ++G + RA          K + ++          +  Y+
Sbjct: 393  RMTKGLLDQY-RDGLIIGSACAAGEVYRAILAGLPDEEVKEIASYYDYLEIQPTGNNNYL 451

Query: 185  -----NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
                     H   D +    +++ L        VAT +  FL+ ED  A  +L A     
Sbjct: 452  IRDPRFPDIHSVEDLQAINKKILALGDELGKLTVATCDVHFLNPEDALARKILQA---GM 508

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIE 297
                +++P +    YL+   EM+  FS L + A E  VE A + S  ++   P+  R   
Sbjct: 509  GYPDEEQPPL----YLRTTEEMLEEFSYLGDRAYEVVVENANKISDQVEHFKPVPDR--- 561

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARM 351
                       ++L +  + G + ++   + A+ +        +    RL  EL+ I   
Sbjct: 562  -----------DQLYSPTIPGAKEKVESLSYARAHEWYGPKLPKIVEDRLKQELSSIIGN 610

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------- 398
             FS  + I    ++ +  +   VG  RGS   S  A  L IT+++PL             
Sbjct: 611  GFSVLYYIAHLLVKKSNDDGYMVG-SRGSVGSSFVATMLNITEVNPLVPHYRCPHCYHTE 669

Query: 399  ----------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
                                          ++ F  FL      +PD D++F  + +   
Sbjct: 670  FFTDGSVGSGFDLPEKDCPECGTPMIRDGHNIPFAVFLGFHGDKVPDIDLNFSGEYQPRA 729

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
             +Y +  +G + V +  T G+++ K A   + +  +               +P     ++
Sbjct: 730  HKYTEELFGRDNVFRAGTLGTIKDKTAYGYIKKYYETR------------GEPKRTAFIE 777

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRD 548
                                   +  KL G+ R    H  GIV+  R L    + P+   
Sbjct: 778  G----------------------LIPKLAGVKRTTGQHPGGIVVIPRDLDVHYITPVSYP 815

Query: 549  VRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                      T ++   I++  ++K D LG    T+++     L +   +     IP  D
Sbjct: 816  ADDPSCGTITTHYDFHSIDE-RIVKLDILGHDDPTVIKMLDRMLGEDYCR----NIPIGD 870

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L  +  +LG+   E  G   A  G+       +  ++S  +P    +++  +   
Sbjct: 871  PDTMELFLSTKSLGVTP-EQIGTDVATYGVPECGTRFVRQMISDVKPKNFSDLLRISGYS 929

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIK 722
            +G +  ++    +      T+  I  ++ +M       +    +    +  R+    K  
Sbjct: 930  HGTDVWLNNAQDLIRSGTPTEDTISTRDDIMNWLINKGMEPSMAFGIMEWSRKGKAHKKG 989

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             E D+ +             K    + +        Y F K+HA AY + +Y+ A+ K H
Sbjct: 990  FEPDQLEA----------FEKAHIPDFYIKACTTLQYLFPKAHAVAYVLSAYRIAYCKVH 1039

Query: 783  YPVEFLAASMTLE---------MDNVEKIKKFCQ------------------------DA 809
            +P EF AA  T+             ++ +K+F Q                        + 
Sbjct: 1040 HPKEFYAAYFTVRAPHFDYTLVHKGLDYMKRFIQNVNAQGTKASVNDKDTATYMELCVEM 1099

Query: 810  RQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
             +            +    F V +  +   L AI G+G   A  I+EA    PF S ED 
Sbjct: 1100 LERGFVFDEVDLYKSDAHKFLVTEKGLLPPLGAIGGIGGVAAEGIVEARKKGPFISQEDL 1159

Query: 869  CSRVDSKKLNRRVL-ESLVFAG 889
             +R      N  +L E  V  G
Sbjct: 1160 RNRAKISTSNVEILDELGVLEG 1181


>gi|312898623|ref|ZP_07758013.1| DNA polymerase III, alpha subunit [Megasphaera micronuciformis F0359]
 gi|310620542|gb|EFQ04112.1| DNA polymerase III, alpha subunit [Megasphaera micronuciformis F0359]
          Length = 1202

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 178/994 (17%), Positives = 339/994 (34%), Gaps = 182/994 (18%)

Query: 2    TQYLE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
             + ++  ++P  V L +H++ S ++  +++ +++  +     PAIA+TD   + S     
Sbjct: 279  NERMDTHENPR-VELHLHTTMSDMDALITVKDLIKTVKKWNHPAIAVTDHGVVQSFPMLQ 337

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
              A A G++ I G +  +  ++                 I++L     G + L +LVS  
Sbjct: 338  SVAKANGVKVIYGMEGYLFDEE-----------IDKSYHIIILAKNQVGIRNLYKLVSIS 386

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS--SQVAEKRLLTF--- 174
            +L    +   RI    L E   EGLI+ +   +G + R+           +K    +   
Sbjct: 387  HLKYIYRGRPRIPRKILNEY-REGLILGSACEAGELVRSMVQKRLPYDELKKIAEYYDYL 445

Query: 175  --KKLFGDRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              + +  +   V        +  R     ++++        VAT ++ F+++ED    ++
Sbjct: 446  EIQPISNNGFLVREGFVDDEEGLRDINRTILKIGDELGKMTVATCDAHFMNKEDKIYREI 505

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            LM              +  PD YL+   EM+  F+ L       V I             
Sbjct: 506  LMTGKGFRD------AQFQPDLYLRTTDEMLEEFAYLGTDRAEEVVITN----------- 548

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFE 344
              P  +    +++    +  L    + G    L +  + K +            +RLD E
Sbjct: 549  --PNKVNDWVEEVTPVPKENLYFPRIEGSSEALKEMCLRKAHKIYGTPLPTVVEERLDEE 606

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----- 399
               I    F   + I    ++ +  +   VG  RGS   S  A    IT+++PL      
Sbjct: 607  FTSIFGNGFGVLYYIAHKLVKHSNDDGYLVG-SRGSVGSSFVATMSDITEVNPLPPHYVC 665

Query: 400  ------------------------------------FSLLFERFLNPDRMSMPDFDIDFC 423
                                                 ++ F  FL  +   +PD D++F 
Sbjct: 666  PSCCHSEFFTDGSVAGGFDLPDKNCPECGTPMKKDGHNIPFAIFLGFEGDKVPDIDLNFS 725

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +   +  +Y +  +G + V +  T G++Q K A   V +                    
Sbjct: 726  GEYHPKAHKYTEELFGKDNVFRAGTIGAVQDKTAYGYVKK-------------------- 765

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--Q 541
                          + EAR    +   +  +     G+      H  G+++  R +    
Sbjct: 766  --------------WAEARGITANDAYINSLVNGCTGIKNTTGQHPGGVMVIPRDIDVHH 811

Query: 542  LVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
              P+          +  T F+   IE   L+K D LG    T+++   D    +      
Sbjct: 812  FTPVQYPANKKDCGIITTHFDYHSIE-GRLVKLDILGHDDPTVIRMLEDMTGVKAT---- 866

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IPFDD +T  L ++   LG+   E  G      G+       +  ++    P     +
Sbjct: 867  -TIPFDDQKTMSLFSSTEALGLTPEEL-GSPVGSLGIPEFGTSFVRKMLVDTMPKTFSGL 924

Query: 659  VVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLR 714
            V  +   +G +  ++    LI     +    +  ++ +M       +    S    + +R
Sbjct: 925  VRISGFSHGTDVWLNNAQELITSGKVQLNEAVSTRDDIMNYLINHGIKPKTSFKVMENVR 984

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +  G    ++   +K     G  + G         F        Y F ++HA AY ++++
Sbjct: 985  KGKGIDKPDKATGKKTTDYEGELRKGH----IPEWFIQSCLKIGYLFPRAHAVAYVMMAF 1040

Query: 775  QTAWMKTHYPVEFLAASMTLEM--------------------------DNVEKIKK---- 804
            + AW K +YP+ + AA  T+                            D   KI+K    
Sbjct: 1041 RIAWYKINYPLAYYAAYFTIRAKAFSIPMMIHGLDTARQAMKMITAKGDGASKIEKDLYS 1100

Query: 805  ---FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                  +     I  M   +N      F + D +I     A+ G+G   A  I+E    +
Sbjct: 1101 TLELVVEMNLRGISFMNIDINKSEATKFTIHDGKILLPFTALDGLGKNVAEQIVEGRKSQ 1160

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + S ED   R    K+ + +++SL   G L   
Sbjct: 1161 AYTSKEDLKYR---GKVGQTLIDSLAEMGCLGEL 1191


>gi|325522046|gb|EGD00720.1| DNA polymerase III, alpha subunit [Burkholderia sp. TJI49]
          Length = 544

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 165/564 (29%), Positives = 263/564 (46%), Gaps = 31/564 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AAG+ 
Sbjct: 10  PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAAGLP 69

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            II          + ++T     P     ++       +GY  L ELVS   +  + K S
Sbjct: 70  LII--------GSHFRLTAADGAPAIAFSAL---AMNRDGYGNLCELVSLGRMRGK-KGS 117

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            R+    L++       +        I    F  + Q  + ++  F ++FGDR +V L  
Sbjct: 118 YRLAPRDLEQPDAPFTHLRGLPDCIAILSPDFPANEQRLDAQVEWFARVFGDRAWVALTL 177

Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H R  D      V ++A  H +P+VAT+  L          DVL ++     VS+     
Sbjct: 178 HARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTSIRLGRPVSECGYEL 237

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L++R  + +++     ALE TV +ARRC+F L       P  +     D+   
Sbjct: 238 APNAERHLRSRLRLANLYP--AGALEETVRVARRCTFSLDDLKYEYPDEVVPAGYDV--- 292

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               LR +   G + R   G         D + +++ EL +IA + +  YFL V D +Q+
Sbjct: 293 -ATYLREQTYIGAQRRFPAGI------PVDVQAQIEHELQLIAELNYEAYFLTVYDIVQF 345

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A++N I +  GRGS A S   Y L +T++DP R S+LFERF++ +R   PD D+DF   R
Sbjct: 346 ARQNGI-LCQGRGSAANSAVCYCLGMTEVDPSRQSMLFERFMSKERNEPPDIDVDFEHQR 404

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EV++Y+  KYG +R A      + + ++ALR+ G+AL +  + VDR+ K      +  
Sbjct: 405 REEVMQYIYRKYGRDRAALTAAVSTYRPRSALREAGKALGVDPAIVDRVAKSHHWFDSRA 464

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             LQ  A+     EA    P   +    + +L G  RH S H+ G VI    L++LVP+ 
Sbjct: 465 DLLQRFAEAGLDPEA----PLNQQWAAFAAQLLGYPRHLSQHSGGFVISRGKLTRLVPVE 520

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIK 570
                D  + Q++   IE  G++K
Sbjct: 521 NAAMEDRTIIQWDKDDIEALGILK 544


>gi|260220163|emb|CBA27426.1| Error-prone DNA polymerase [Curvibacter putative symbiont of Hydra
            magnipapillata]
          Length = 1035

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 139/538 (25%), Positives = 232/538 (43%), Gaps = 41/538 (7%)

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            + +L+   RH S H  G V+   PL++LVP+      D  V Q++   ++  GL+K D L
Sbjct: 460  ATQLQSFPRHLSQHVGGFVLTQGPLTRLVPVENASMPDRSVIQWDKDDLDAVGLLKVDVL 519

Query: 575  GLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
             L  L+ +++ L  + Q R V + +  +P +D  TY ++    T+G+FQ+ES      L 
Sbjct: 520  ALGMLSAIRRCLHLIGQWRDVPLRMQDVPAEDPATYAMICQADTVGVFQIESRAQMSMLP 579

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
             ++P C  D++  V++ RPGPI   +   Y   +   + +    P ++  LK T GV I+
Sbjct: 580  RLKPKCFYDLVVEVAIVRPGPIQGGMVHPYLKARANPQAVTYASPGLEEALKRTLGVPIF 639

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            QEQVMQIA   + ++  EAD LRR+M   K K  + K  +R + G  KNG ++  A  +F
Sbjct: 640  QEQVMQIAMAAADFTAGEADQLRRSMAAWKRKGGVGKFYDRLVGGMLKNGYTQEFADTLF 699

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            + +  F +YGF +SHAA++A++ Y + W+K H P  FLAA +  +        +  QDAR
Sbjct: 700  KQIEGFGEYGFPESHAASFALLVYVSCWLKRHEPACFLAAMLNSQPLGFYGPAQLVQDAR 759

Query: 811  QFNIQIMPPSVNTPCVDFKVGDN----------------RIYYSLAAIKGVGTTTARHIM 854
               +++    V     D  +                    I   L  + G+    A  I 
Sbjct: 760  HHGVEVRAMDVLHSAWDCTLEQPQAQHPTPNGWTLQTQAAIRLGLRMVSGLQQAVAERIC 819

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
               A+ PF S +D   R      + + L S   A AL      R Q +     ++     
Sbjct: 820  AERANGPFTSTQDLALRCALDAGDLKALAS---ADALISLSGHRRQQVWDASALRPAPAL 876

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
            ++                   D++ L      +       +    G     HPL + +  
Sbjct: 877  LQ-------------GVPIEEDELALPPA---DEGEEVTFDYAATGLTLRSHPLQLLREQ 920

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            L K  +    +      G  +R   +V ++QQ  T KG  + +VT  +         +
Sbjct: 921  LSKKNLLTAAQMRDYPSGRLVRACGIVTARQQPGTAKG--VVFVTLEDETGSVNIIVW 976



 Score =  247 bits (630), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 171/369 (46%), Gaps = 19/369 (5%)

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
           K   R+  +WL +        L       +        ++ A    ++ + LFG   ++ 
Sbjct: 3   KGDYRV--AWLGQPEASPWHTLRHCE--VLLHLPLAIKTEAACAIAMSARGLFGINSWLA 58

Query: 186 LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +    G  +  E +   Q+A    L  +AT      +      HDVL AV     V+Q  
Sbjct: 59  VTAGLGGMQALERAHWQQIAAVSGLAPLATGQVRMHTRSRKPLHDVLTAVRCGLPVAQCG 118

Query: 245 RP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              +   +H+L++R+ + ++F+  P+ L +T+ +A RCSF L       P     E    
Sbjct: 119 FALQANAEHHLRSRARLAALFT--PDELAHTLVVAGRCSFTLDALRYQYP----MEAVLP 172

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                  LR     G   R   G           R +++ EL +IA MK+  YFL V D 
Sbjct: 173 GHTPAQTLRQYTEEGALERYPTGM------PPHVRTQVEHELALIADMKYEMYFLTVHDL 226

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           +++A+   I +  GRGS A S   Y L +T++DP R ++LFERF++ +R   PD D+DF 
Sbjct: 227 VRFARGRGI-LCQGRGSAANSAVCYCLGVTEVDPSRMNVLFERFISKERDEPPDIDVDFE 285

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             RR+EVI+Y+  KYG ER A      S + ++ALRDVG AL++P   +  + K  P   
Sbjct: 286 HQRREEVIQYIYAKYGRERAAITAVVASYRPRSALRDVGWALEIPEVLITAMAKEHPGMY 345

Query: 484 AHPVSLQAI 492
           +  V ++ +
Sbjct: 346 SRAVLVERL 354


>gi|213582269|ref|ZP_03364095.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. E98-0664]
          Length = 562

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 176/433 (40%), Positives = 253/433 (58%), Gaps = 11/433 (2%)

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGK 668
            +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+
Sbjct: 1    MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 60

Query: 669  EKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            E++        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  E
Sbjct: 61   EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 120

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HY
Sbjct: 121  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 180

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAI 842
            P EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D     Y + AI
Sbjct: 181  PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAI 240

Query: 843  KGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGVG      I++A      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L
Sbjct: 241  KGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 300

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            + SL +  K A    K       ++F    +     + +          V  + E+  LG
Sbjct: 301  MNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLG 360

Query: 961  FYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y +GHP++ Y   + +  G    ++   T RG     A +V++ +   T++G+RIG  T
Sbjct: 361  LYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICT 420

Query: 1020 FSEPAKEYEANFF 1032
              + +   E   F
Sbjct: 421  LDDRSGRLEVMLF 433


>gi|320529719|ref|ZP_08030798.1| DNA polymerase III, alpha subunit [Selenomonas artemidis F0399]
 gi|320138080|gb|EFW29983.1| DNA polymerase III, alpha subunit [Selenomonas artemidis F0399]
          Length = 1259

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 198/1010 (19%), Positives = 341/1010 (33%), Gaps = 212/1010 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  H+  S L+  +    +++  A    PA+AITD   + +  E    A A   + + 
Sbjct: 344  VELHAHTKMSALDAVVPPKTLVETAARWGWPAVAITDHGVVQAFPEAMNTARALKKKGVD 403

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL----DQGKQ 127
               +       +    Q ++       I+ L     G   L +LVS  ++      + + 
Sbjct: 404  IKIIYGMEGYLIDDPAQQRSN-----HIIFLAKNKTGLYNLYKLVSISHIRFFRGSKKRG 458

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +  + L+E   +GLI+ +   +G + RA     S    +R+  F      +   N  
Sbjct: 459  RPCVPRAILEEY-RDGLIVGSACEAGELIRAIVRGESDEELERIAAFYDFLEIQPIHNND 517

Query: 188  RHRGYDRY----------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
              +  DR+             +V +LA     PL+AT +  FL+ ED     +L      
Sbjct: 518  FLKIDDRFPIRDDEDLRNINRKVSELAEKLGKPLIATCDVHFLNPEDAVYRAMLQKANG- 576

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRF 295
                  DR    P  YL+   EM++ F  L    A E  V   RR +  ++   PI    
Sbjct: 577  --YRDADR---QPPLYLRTTDEMLAEFDYLGVERAYECVVTNPRRIADEVEEFLPIPDEL 631

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                     +E E     KA      RL    +      Q    RLD EL  I +  FS 
Sbjct: 632  YAPMVPGADREIEEMSYRKA-----RRLYGENL-----PQIVSDRLDLELKPILKHGFSA 681

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------- 399
             ++I    ++ +  +   VG  RGS   S  A  + +T+++PL                 
Sbjct: 682  LYIIAQRLVKKSNDDGYLVG-SRGSVGSSFVATMIGVTEVNPLPPHYRCKHCQYNKFITD 740

Query: 400  -------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                      ++ F  FL  D   +PD D++F  D +    +Y 
Sbjct: 741  GSVGSGFDLPSMDCPVCGTPLIKDGHNIPFAVFLGFDGDKVPDIDLNFSGDYQPVAHKYT 800

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            +  +G   V +  T   LQ K A         M Y +   + K  P              
Sbjct: 801  EVLFGKMNVFRAGTIAGLQDKNAYGYA-----MHYYEDMGVQKGRPY------------- 842

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDVR-- 550
                            +  + +   G+      HA GI++  R +      P+ R     
Sbjct: 843  ----------------IEHMMRGCMGVKATTGQHAGGIMVVPRDMDVHYFTPIQRPANNM 886

Query: 551  -SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
             SD   T F+   I +  L+K D LG    T+++   +         D   IPFDD  T 
Sbjct: 887  ESDTLTTHFDYHSISE-RLVKLDILGHDDPTVIKMLEEL-----THRDPETIPFDDPATM 940

Query: 610  HLLTTKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             + T+                T GI +  +S  ++ ++   PDC  D++ +        +
Sbjct: 941  SIFTSTDALGITPEELGANMGTYGIPEFRTSFTQKMIDDSNPDCFADLVRISGFSHGTNV 1000

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADV 712
                             +   LI       +  I  ++ +M       +    S    + 
Sbjct: 1001 WLG--------------NAQDLIKAGTSTLKDAISARDDIMNYLMQNGIDPLLSFKTMEN 1046

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +R+      K       E+  +G    GI +    +  ++      Y F ++HA AY ++
Sbjct: 1047 VRKG-----KGIAPDVVEKLYAG----GIPEWYVESCQKI-----KYLFPRAHATAYVMM 1092

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIKKFCQDARQF------- 812
             Y+ A+ K HYP+ + AA  ++  D  +              I     +AR+        
Sbjct: 1093 GYRIAFCKVHYPLAYYAAYFSIRADEFDANIIAKGRDAIKAAIDALNAEAREHRGKLDNK 1152

Query: 813  -----------------NIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
                                  P  + T     F + +  +   L A+ G+G   A+ I+
Sbjct: 1153 KQDTLIVLQLAWEMYLRGFACEPVDIYTSNAATFILHEKSLLPPLTALPGMGQKAAQAIV 1212

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ 903
            EA  D  F S+ED  +R      +  VL +    G L      ++++L  
Sbjct: 1213 EARKDGVFISIEDLATRAHVPAPSIEVLRA---HGCLAGMTESNQVELFA 1259


>gi|313895031|ref|ZP_07828588.1| DNA polymerase III, alpha subunit, Gram-positive type [Selenomonas
            sp. oral taxon 137 str. F0430]
 gi|312975926|gb|EFR41384.1| DNA polymerase III, alpha subunit, Gram-positive type [Selenomonas
            sp. oral taxon 137 str. F0430]
          Length = 1259

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 198/1010 (19%), Positives = 342/1010 (33%), Gaps = 212/1010 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  H+  S L+  +    +++  A    PA+AITD   + +  E    A A   + + 
Sbjct: 344  VELHAHTKMSALDAVVPPKTLVETAARWGWPAVAITDHGVVQAFPEAMNTARALKKKGVD 403

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL----DQGKQ 127
               +       +    Q ++       I+ L     G   L +LVS  ++      + + 
Sbjct: 404  IKIIYGMEGYLIDDPAQQRSN-----HIIFLAKNKTGLYNLYKLVSISHIRFFRGSKKRG 458

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +  + L+E   +GLI+ +   +G + RA     S    +R+  F      +   N  
Sbjct: 459  RPCVPRAILEEY-RDGLIVGSACEAGELIRAIVRGESDEELERIAAFYDFLEIQPIHNND 517

Query: 188  RHRGYDRY----------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
              +  DR+             +V +LA     PL+AT +  FL+ ED     +L      
Sbjct: 518  FLKIDDRFPIRDDEDLRNINRKVSELADKLGKPLIATCDVHFLNPEDAVYRAMLQKANG- 576

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRF 295
                  DR    P  YL+   EM++ F  L    A E  V   RR +  ++   PI    
Sbjct: 577  --YRDADR---QPPLYLRTTDEMLAEFDYLGAERAYECVVTNPRRIADEVEEFLPIPDEL 631

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                     +E E     KA      RL    + K         RLD EL  I +  FS 
Sbjct: 632  YAPMVPGADREIEEMSYRKA-----RRLYGENLPK-----IVSDRLDLELKPILKHGFSA 681

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------- 399
             ++I    ++ +  +   VG  RGS   S  A  + +T+++PL                 
Sbjct: 682  LYIIAQRLVKKSNDDGYLVG-SRGSVGSSFVATMIGVTEVNPLPPHYRCKHCQYNKFITD 740

Query: 400  -------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                      ++ F  FL  D   +PD D++F  D +    +Y 
Sbjct: 741  GSVGSGFDLPSMDCPVCGTPLIKDGHNIPFAVFLGFDGDKVPDIDLNFSGDYQPVAHKYT 800

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            +  +G   V +  T   LQ K A         M Y +   + K  P              
Sbjct: 801  EVLFGKMNVFRAGTIAGLQDKNAYGYA-----MHYYEDMGVQKGRPY------------- 842

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDVR-- 550
                            +  + +   G+      HA GI++  R +      P+ R     
Sbjct: 843  ----------------IEHMMRGCMGVKATTGQHAGGIMVVPRDMDVHYFTPIQRPANNM 886

Query: 551  -SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
             SD   T F+   I +  L+K D LG    T+++   +         D   IPFDD  T 
Sbjct: 887  ESDTLTTHFDYHSISE-RLVKLDILGHDDPTVIKMLEEL-----THRDPETIPFDDPATM 940

Query: 610  HLLTTKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             + T+                T GI +  +S  ++ ++   PDC  D++ +        +
Sbjct: 941  SIFTSTDALGITPEELGANMGTYGIPEFRTSFTQKMIDDSNPDCFADLVRISGFSHGTNV 1000

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADV 712
                             +   LI       +  I  ++ +M       +    S    + 
Sbjct: 1001 WLG--------------NAQDLIKAGTSTLKDAISARDDIMNYLMQNGIDPLLSFKTMEN 1046

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +R+      K       E+  +G    GI +    +  ++      Y F ++HA AY ++
Sbjct: 1047 VRKG-----KGIAPDVVEKLYAG----GIPEWYVESCQKI-----KYLFPRAHATAYVMM 1092

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIKKFCQDARQF------- 812
             Y+ A+ K HYP+ + AA  ++  D  +              I     +AR+        
Sbjct: 1093 GYRIAFCKVHYPLAYYAAYFSIRADEFDANIIAKGRDAIKAAIDALNAEAREHRGKLDNK 1152

Query: 813  -----------------NIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIM 854
                                  P  + T   + F + +  +   L A+ G+G   A+ I+
Sbjct: 1153 KQDTLIVLQLAWEMYLRGFACEPVDIYTSNAETFILHEKSLLPPLTALPGMGQKAAQAIV 1212

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ 903
            EA  D  F S+ED  +R      +  VL +    G L      ++++L  
Sbjct: 1213 EARKDGVFISIEDLATRAHVPAPSIEVLRA---HGCLAGMTESNQVELFA 1259


>gi|330838937|ref|YP_004413517.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
 gi|329746701|gb|AEC00058.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
          Length = 1254

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 183/991 (18%), Positives = 329/991 (33%), Gaps = 205/991 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  H+  S ++  +S   ++   A+   PAIAITD   + +  + ++ A    I+ I 
Sbjct: 352  VELHAHTRMSNMDAVVSAETLIKTAASWGWPAIAITDHGVVQAFPDAAKAASKLDIKVIY 411

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +  +D                 I+ L     G + L ++VS  +L     +  R+
Sbjct: 412  GMEGYLVQED---------FEQKHANHIIFLAKNLNGLRNLYQMVSLSHLK-YLHRQPRL 461

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                ++E   E +I+ +   +G + RA      +     + +F      +   N +    
Sbjct: 462  PKHIIEEY-REDVIIGSACEAGELIRAIVAQKPEEELLEIASFYDYLEIQPIGNNEFLVR 520

Query: 192  YD-----------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             D           R    +V +LA      L+AT +  FL+ ED     +LM        
Sbjct: 521  SDKFPHIKDDEDLRRINLKVAELAKKLGKMLIATCDVHFLNPEDAIYRAILMK---GKGF 577

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEK 298
               +   + P  +L+   EM++ F  L E  A E  V   R+ S +++   PI       
Sbjct: 578  EDAE---LQPPLFLRTTEEMLAEFDYLGEEAAYEAVVTNPRKVSDMIEKFKPIPDELYSP 634

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  +E  +    KA +     L           +    RL  EL  I    FS  +L
Sbjct: 635  MIPGAAEEIRDMSYRKARSLYGENL----------PEVVEARLKQELTPIIGHGFSVLYL 684

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
            I    ++ +  +   VG  RGS   S  A    IT+++PL                    
Sbjct: 685  IAQRLVKKSNDDGYLVG-SRGSVGSSFVATMTDITEVNPLPPHWRCPHCKFSEFVEDGSV 743

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + F  FL  D   +PD D++F  + +    +Y +  
Sbjct: 744  GCGYDLPSRKCPVCGTELLKDGHDIPFAVFLGFDGDKVPDIDLNFSGEYQPVAHKYTEEL 803

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G + V +  T  ++  K A   V +                                  
Sbjct: 804  FGKDNVYRAGTIATVADKTAFGYVKK---------------------------------- 829

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRSD--- 552
            F E +        +  ++    G+ R    H AGI++  R   +    P+ R        
Sbjct: 830  FFEEKGVKKHNAYIASLAAGCMGVKRTTGQHPAGIMVVPRNMDVHFFTPIQRPADDKNTT 889

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T F+   I  + L+K D LG    T+++   D         D   IPFDD  T  + 
Sbjct: 890  TITTHFDYHSI-SSRLVKLDILGHDDPTVIKMLEDL-----THRDPKTIPFDDPATLSIF 943

Query: 613  TTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            ++               GT GI +  +   RQ ++   P C  D++ +        +   
Sbjct: 944  SSTKALGLDPKELGANSGTFGIPEFRTGFTRQMIDDTHPSCFSDLVRISGFSHGTDVWLG 1003

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRR 715
                          +   LI       +  I  ++ +M       +    S    + +R+
Sbjct: 1004 --------------NAQDLIRSGQCTLREAISARDDIMMYLIHSGIDPLLSFQTMESVRK 1049

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
              G K         E  +    + GI +       ++      Y F ++HA AY +++++
Sbjct: 1050 GKGIK---------EATVKILREGGIPEWYIEACQKI-----KYMFPRAHATAYVMMAWR 1095

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEK--------------------------------IK 803
             A+ K HYP+ F AA  ++     +                                 + 
Sbjct: 1096 IAYCKVHYPLAFYAAYFSIRAAEFDADVVARGKDYVKKQLDALEAKEAPDIKEKATIIVL 1155

Query: 804  KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            +   +       +    +     + F + +  +   LA++ GVG + AR I+EA  D  F
Sbjct: 1156 QLAWEMYLRGFFMERVDIYASEAERFVLHEKSLLPPLASLGGVGASAARSIVEARKDGLF 1215

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             S+ED   R    K     L++      +D 
Sbjct: 1216 TSIEDIKKRTGVSKTCIDALQAHGCLADMDA 1246


>gi|260887309|ref|ZP_05898572.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
 gi|260862945|gb|EEX77445.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
          Length = 1255

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 183/991 (18%), Positives = 329/991 (33%), Gaps = 205/991 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  H+  S ++  +S   ++   A+   PAIAITD   + +  + ++ A    I+ I 
Sbjct: 353  VELHAHTRMSNMDAVVSAETLIKTAASWGWPAIAITDHGVVQAFPDAAKAASKLDIKVIY 412

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +  +D                 I+ L     G + L ++VS  +L     +  R+
Sbjct: 413  GMEGYLVQED---------FEQKHANHIIFLAKNLNGLRNLYQMVSLSHLK-YLHRQPRL 462

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                ++E   E +I+ +   +G + RA      +     + +F      +   N +    
Sbjct: 463  PKHIIEEY-REDVIIGSACEAGELIRAIVAQKPEEELLEIASFYDYLEIQPIGNNEFLVR 521

Query: 192  YD-----------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             D           R    +V +LA      L+AT +  FL+ ED     +LM        
Sbjct: 522  SDKFPHIKDDEDLRRINLKVAELAKKLGKMLIATCDVHFLNPEDAIYRAILMK---GKGF 578

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEK 298
               +   + P  +L+   EM++ F  L E  A E  V   R+ S +++   PI       
Sbjct: 579  EDAE---LQPPLFLRTTEEMLAEFDYLGEEAAYEAVVTNPRKVSDMIEKFKPIPDELYSP 635

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  +E  +    KA +     L           +    RL  EL  I    FS  +L
Sbjct: 636  MIPGAAEEIRDMSYRKARSLYGENL----------PEVVEARLKQELTPIIGHGFSVLYL 685

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
            I    ++ +  +   VG  RGS   S  A    IT+++PL                    
Sbjct: 686  IAQRLVKKSNDDGYLVG-SRGSVGSSFVATMTDITEVNPLPPHWRCPHCKFSEFVEDGSV 744

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + F  FL  D   +PD D++F  + +    +Y +  
Sbjct: 745  GCGYDLPSRKCPVCGTELLKDGHDIPFAVFLGFDGDKVPDIDLNFSGEYQPVAHKYTEEL 804

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G + V +  T  ++  K A   V +                                  
Sbjct: 805  FGKDNVYRAGTIATVADKTAFGYVKK---------------------------------- 830

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRSD--- 552
            F E +        +  ++    G+ R    H AGI++  R   +    P+ R        
Sbjct: 831  FFEEKGVKKHNAYIASLAAGCMGVKRTTGQHPAGIMVVPRNMDVHFFTPIQRPADDKNTT 890

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T F+   I  + L+K D LG    T+++   D         D   IPFDD  T  + 
Sbjct: 891  TITTHFDYHSI-SSRLVKLDILGHDDPTVIKMLEDL-----THRDPKTIPFDDPATLSIF 944

Query: 613  TTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            ++               GT GI +  +   RQ ++   P C  D++ +        +   
Sbjct: 945  SSTKALGLDPKELGANSGTFGIPEFRTGFTRQMIDDTHPSCFSDLVRISGFSHGTDVWLG 1004

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRR 715
                          +   LI       +  I  ++ +M       +    S    + +R+
Sbjct: 1005 --------------NAQDLIRSGQCTLREAISARDDIMMYLIHSGIDPLLSFQTMESVRK 1050

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
              G K         E  +    + GI +       ++      Y F ++HA AY +++++
Sbjct: 1051 GKGIK---------EATVKILREGGIPEWYIEACQKI-----KYMFPRAHATAYVMMAWR 1096

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEK--------------------------------IK 803
             A+ K HYP+ F AA  ++     +                                 + 
Sbjct: 1097 IAYCKVHYPLAFYAAYFSIRAAEFDADVVARGKDYVKKQLDALEAKEAPDIKEKATIIVL 1156

Query: 804  KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            +   +       +    +     + F + +  +   LA++ GVG + AR I+EA  D  F
Sbjct: 1157 QLAWEMYLRGFFMERVDIYASEAERFVLHEKSLLPPLASLGGVGASAARSIVEARKDGLF 1216

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             S+ED   R    K     L++      +D 
Sbjct: 1217 TSIEDIKKRTGVSKTCIDALQAHGCLADMDA 1247


>gi|298487242|ref|ZP_07005291.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
 gi|298158266|gb|EFH99337.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
          Length = 574

 Score =  465 bits (1198), Expect = e-128,   Method: Composition-based stats.
 Identities = 145/540 (26%), Positives = 244/540 (45%), Gaps = 35/540 (6%)

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
            P + R+L ++ +L G  RH S H  G VI + PL  LVP+     +D  + Q++   ++ 
Sbjct: 2    PILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLVPVENAAMADRTIIQWDKDDLDL 61

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GL+K D L L  L+ L+++ D +   RG +  L+ +P DD +TY +++   T+G+FQ+E
Sbjct: 62   VGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADLPGDDRKTYEMISRADTIGVFQIE 121

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPML 682
            S      L  ++P+   D++  V++ RPGPI  D +  Y  R+N +E I    P +  + 
Sbjct: 122  SRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRRNKEEAITYP-PKLKSVF 180

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGI 741
            + T GV ++QEQVM++A + + Y+  EAD LRRAM   K    ++  +ER  +G  KNG 
Sbjct: 181  ERTLGVPLFQEQVMEVAIIAADYTPGEADELRRAMAAWKRHGGLEPHRERLRTGMLKNGY 240

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
                A  IFE +  F  YGF +SHAA++A+++Y + W+K H P  F  A +         
Sbjct: 241  EADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPAAFTCALINSWPMGFYS 300

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGD---------NRIYYSLAAIKGVGTTTARH 852
              +  QDAR+ +I+I P  V     D  +             I   L  ++G     A  
Sbjct: 301  PDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDRTRNLAIRLGLRMVRGFREEDALR 360

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            I  A A +PF    D   R +    + R  E+L  +GAL      R +    +  +    
Sbjct: 361  IEVARAKRPFVDATDLTLRAEL---DSRAAEALADSGALGGLIGHRHRARWEVAGV---- 413

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
                         +F       +  I      +   +     +   LG     HPL + +
Sbjct: 414  --------EAQRPLFDDLPSEETQVI----LPLPTVAEDLVADYTTLGTTLGPHPLALLR 461

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              L     +  ++ +       + +A +V+ +Q+  T  G  + +VT  +         +
Sbjct: 462  RQLAAKRFRSSQDLLHLENDRTLSVAGLVIGRQRPGTASG--VTFVTLEDEFGMVNIVVW 519


>gi|89098599|ref|ZP_01171481.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
 gi|89086561|gb|EAR65680.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
          Length = 1440

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 173/931 (18%), Positives = 328/931 (35%), Gaps = 187/931 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ ++   ++   Q N  M               LL  T  G + L +LVS  ++ +   
Sbjct: 585  LKEVMQKGIEYHNQLNDNMGKGNAYQRARPSHCTLLAQTEAGLKNLFKLVSISHM-NYFY 643

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLFG 179
            +  R+  S L++   EG+++ +G   G +  A      + AE     +       K ++ 
Sbjct: 644  RVPRVPRSLLEKY-REGILVGSGCDRGEVFEAMMQKGPEEAEDLASFYDYLEVHPKAVYA 702

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              + + L R         S +V+L    ++P+ AT N  +L+  D     +L+       
Sbjct: 703  HLIELELVRDEKALEEIISNIVKLGEKLDIPVAATGNVHYLNPVDKIYRKILINSQGG-- 760

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        PD + +  +EM+  FS L +  A E  VE   + + ++    PI      
Sbjct: 761  -ANPLNRHQLPDVHFRTTNEMLDAFSFLGKEKAKEIVVENTNKVADMIDSIKPIKDDLYT 819

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + D      + E+RN +                   +    RL+ EL  I    F+  +
Sbjct: 820  PKIDGA----DEEMRNMSYDMARRIYGDEL------PEIVEARLEKELKSIIGHGFAVIY 869

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 870  LISHKLVKKSLNDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPACKHSEFFNDGS 928

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 929  VGSGFDLPDKNCPTCDIPYRKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 988

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V                            +A   D+
Sbjct: 989  LFGEDNVYRAGTIGTVADKTAYGYV----------------------------KAYQQDN 1020

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRS 551
              +   +    +DRL   +    G+ R    H  GI++      +    P+     D  S
Sbjct: 1021 NLQ---IRGAEIDRL---ASGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADDRTS 1074

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY-- 609
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E    
Sbjct: 1075 EWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1128

Query: 610  ------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                         ++   GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1129 FSGTESLGVTQDQIMCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHGTDVWL 1188

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
                    N +E I +    +  ++     +++Y    +    L   ++    + +R+  
Sbjct: 1189 G-------NAQELIHNSICTLSEVIGCRDDIMVY----LIYQGLEPAFAFKIMESVRKG- 1236

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K + ++M+++            + K      +    K   Y F K+HAAAY +++ + A
Sbjct: 1237 -KGLSDDMEEE------------MRKNEVPEWYIDSCKKIKYMFPKAHAAAYVLMAVRIA 1283

Query: 778  WMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVN------ 822
            + K H+ + + AA  T+  ++ +          I+   ++     +   P   N      
Sbjct: 1284 YFKVHHALLYYAAYFTVRAEDFDVEAMVRGSQAIRAKIEEINAKGLDASPKEKNLLTVME 1343

Query: 823  -------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
                               +   DF +  + +     AI G+GT  A +I++A  +  F 
Sbjct: 1344 LALEMNERGYKFSKVDLYRSDATDFIIDGDSLIPPFNAIPGLGTNAALNIVKARGEGEFL 1403

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            S ED   R    ++++ +LE L   G L+  
Sbjct: 1404 SKEDLQQR---GRISKTILEYLDNHGCLESL 1431



 Score = 67.7 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ +       AIAITD     S  E         I+ + 
Sbjct: 339 VELHLHTPMSQMDAVSSVSALVSQAKKWGHKAIAITDHAVAQSFPEAFGAGKKNDIKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G ++++         N    P      IV  V T
Sbjct: 399 GVEINLIDDGVPIAYNSAPIPLAEGTYIVFDVET 432


>gi|291533678|emb|CBL06791.1| DNA polymerase III, alpha chain, Gram-positive type [Megamonas
           hypermegale ART12/1]
          Length = 955

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 189/982 (19%), Positives = 339/982 (34%), Gaps = 184/982 (18%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++  +S   ++   A    PAIAITD   + +  E  + A    I+ I 
Sbjct: 49  VELHAHTHMSNMDAVVSAKELISTAARWGWPAIAITDHGVVQAFPEAMKAAKDNKIKVIY 108

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +  +   D  +              I++L   + G + +  +VS  +L    K   R+
Sbjct: 109 GIEGYLTGDDYQQR---------RANHIIMLAKNSIGLRNIYRMVSLSHLKYLYKSRPRL 159

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               + E+  EG+I+ +   +G + RA   N S      + +F      +   N      
Sbjct: 160 PKKIISEL-REGVIIGSACEAGELIRAIVNNESDEKLLEIASFYDYLEIQPIGNNAFLIR 218

Query: 192 YDRYRESQ-----------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            + + + Q           V +LA      L+AT +  FL+ +D     +LM        
Sbjct: 219 NENFPDVQTDEDLIKINLKVAELAKKLNKMLIATCDVHFLNAKDSIYRAILMK---GKGF 275

Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEK 298
              ++    P  YL+   EM+  FS L E  A E  V   R+ + +++V  PI       
Sbjct: 276 EDAEK---QPPLYLRTTDEMLKEFSYLGEELAYEAVVTNPRKIADMVEVFKPIPDELYSP 332

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                 +E  +    KA       L           +  + RL+ ELN I    F+  +L
Sbjct: 333 MIPGADQEIHDMSYAKARELYGENL----------PKVVQDRLELELNSIIGHGFAVLYL 382

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
           I    ++ +  +   VG  RGS   S  A    IT+++PL                    
Sbjct: 383 IAHKLVKKSLDDGYLVG-SRGSVGSSFVATMTNITEVNPLPPHWRCPHCRHSEFIEDGTY 441

Query: 400 ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                   + F  F+  D   +PD D++F  D +    +Y +  
Sbjct: 442 GCGFDMPDKDCPHCGTKMIKDGHDIPFAVFMGFDGDKVPDIDLNFSGDYQPVAHKYTEEL 501

Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
           +G + V +  T  ++  K A   V +             K I                 +
Sbjct: 502 FGKDNVFRAGTIATVADKTAYGYVKKFFDE---------KGI-----------------K 535

Query: 498 FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---D 552
            R+A +          +     G+ R    H  GI++  R   +    P+ R       +
Sbjct: 536 KRDAYIN--------SLVNGCTGVKRTTGQHPGGIMVIPRNMDVHHFTPIQRPADDTTTN 587

Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
              T F+   I  + L+K D LG    T++ K L+ +  R    D   IPFDD  T  + 
Sbjct: 588 TITTHFDYHSI-SSRLVKLDILGHDDPTVI-KMLENITHR----DPRTIPFDDPATMSIF 641

Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI- 671
           ++   LG+   E  G      G+          ++   +P    ++V  +   +G     
Sbjct: 642 SSTEALGVTPEEL-GATSGTFGIPEFRTPFTRQMLDDTKPQKFSDLVRISGFSHGTNVWL 700

Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            +   LI          I  ++ +M       +   +S    + +R+   K + E  D  
Sbjct: 701 ENAQDLITSGTCTVSDAISCRDDIMMHLIHSGIDPLFSFKTMEKVRKG--KGLSE--DDI 756

Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
           K     G  +  I   + +           Y F ++HA AY +++Y+ A+ K HYP+ F 
Sbjct: 757 KVMKDGGIPQWYIDSCLKIK----------YLFPRAHATAYVMMAYRIAFCKVHYPLAFY 806

Query: 789 AASMTLEMDNV-------------EKIKKFCQ----------------------DARQFN 813
           AA  ++                  +K+ +  +                      +     
Sbjct: 807 AAYFSIRAAEFDADIISKGKLAVRDKLDEIIELEKQKKLSVKDKGFQVVLELAWEMYLRG 866

Query: 814 IQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             +    +     D F + +  +     A+ G+ T  A +I++A  +  F S++D   R 
Sbjct: 867 FSVEKIDLYKSNADKFILHEKSLLPPFTALTGISTMAANNIVQARLEGEFTSIDDLKKRA 926

Query: 873 DSKKLNRRVLESLVFAGALDCF 894
                +  ++E L   G LD  
Sbjct: 927 SL---STPIVERLREHGCLDGL 945


>gi|304437423|ref|ZP_07397382.1| DNA polymerase III PolC [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369679|gb|EFM23345.1| DNA polymerase III PolC [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 1254

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 189/1012 (18%), Positives = 333/1012 (32%), Gaps = 216/1012 (21%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  H+  S L+  +    +++  A    PA+AITD   + +  E    A A   + I 
Sbjct: 339  VELHAHTKMSALDAVVPPKVLVETAARWGWPAVAITDHGVVQAFPEAMNTARALAKKGID 398

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG----KQ 127
               +       ++              I+ L     G   L +LVS  ++        + 
Sbjct: 399  IKIIY-----GMEGYLVDGEDDARAFHIIFLAKNKTGLYNLYKLVSLSHIRYFRGTKKRG 453

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+  + L++   EG+I+ +   +G + R           + +  F      +   N  
Sbjct: 454  RPRVPRAVLEQY-REGIIVGSACEAGELIRGIVAGRPDAELEEMAKFYDFLEIQPIHNND 512

Query: 188  RHRGYDRY----------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
              +  DR+             +V +LA     PL+AT +  FL+ ED         +  +
Sbjct: 513  FLKFDDRFPMQTDEDLRDINRKVDELARKLGKPLIATCDVHFLNPEDAVYR---AMIQKA 569

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRF 295
                  +R    P  YL+   EM++ F  L    A E  V   RR +   +   PI    
Sbjct: 570  NGYRDAER---QPPLYLRTTEEMLAEFDYLGAERAYECVVTNPRRIAEETERFLPIPDEL 626

Query: 296  IEKECDDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
                     +E  E +  R + + G                +    RL+ EL  I R  F
Sbjct: 627  YAPMVPGADREIQEMSYARARKLYG------------ENLPKIVSDRLELELKPILRHGF 674

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------- 399
            +  ++I    ++ +  +   VG  RGS   S  A  + +T+++PL               
Sbjct: 675  AALYIIAQRLVKKSNDDGYLVG-SRGSVGSSFVATMIGVTEVNPLPPHYRCPHCQYNRFI 733

Query: 400  ---------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                                        ++ F  FL  D   +PD D++F  D +    +
Sbjct: 734  DDGSVGSGFDLPSEDCPVCGTPLIKDGHNIPFAVFLGFDGDKVPDIDLNFSGDYQPVAHK 793

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            Y +  +G   V +  T   LQ K A         M Y +     K  P            
Sbjct: 794  YTEVLFGKMNVFRAGTIAGLQDKNAYGYA-----MHYYEDQGEAKGRPY----------- 837

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDVR 550
                              +  + +   G+      HA GI++  R +      P+ R   
Sbjct: 838  ------------------IEHMMRGCMGVKATTGQHAGGIMVVPRDMDVHYFTPIQRPAN 879

Query: 551  ---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
               SD   T F+   I +  L+K D LG    T+++   +         D   IPFDD  
Sbjct: 880  NMESDTLTTHFDYHSISE-RLVKLDILGHDDPTVIKMLEEL-----THRDPETIPFDDPA 933

Query: 608  TYHLLTTKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            T  + T+                T GI +  +S  ++ ++   PDC  D++ +       
Sbjct: 934  TMSIFTSTDALGITPEDLGANMGTYGIPEFRTSFTQKMIDDSNPDCFADLVRISGFSHGT 993

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEA 710
             +                 +   LI       +  I  ++ +M       +    S    
Sbjct: 994  NVWLG--------------NAQDLIKAGTSTLKDAISARDDIMNYLMQNGIEPLLSFKTM 1039

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + +R+      +       E+  +G    GI +    +  ++      Y F ++HA AY 
Sbjct: 1040 ENVRKG-----RGIAPDVVEKLRAG----GIPEWYIESCQKI-----KYLFPRAHATAYV 1085

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIKKFCQDARQF----- 812
            ++ Y+ A+ K HYP+ + AA  ++     +              I     +AR+      
Sbjct: 1086 MMGYRIAFCKVHYPLAYYAAYFSIRAAEFDANIISKGKDAVRAAIDALLAEAREHRGKLD 1145

Query: 813  -------------------NIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARH 852
                                    P  +     + F + +N +     AI GVG   A+ 
Sbjct: 1146 NKKQDTLIVLQLAWEMYLRGFSCEPVDLYASDAEKFILHENSLLPPFTAIPGVGQKAAQA 1205

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC-FGYSRMQLLQ 903
            I+EA  D  F S+ED  +R          +E L   G LD     ++++L  
Sbjct: 1206 IVEARRDGRFISVEDLATRAHVPA---PAIEVLRTHGCLDGMMESNQVELFA 1254


>gi|292669878|ref|ZP_06603304.1| DNA polymerase III, alpha subunit [Selenomonas noxia ATCC 43541]
 gi|292648675|gb|EFF66647.1| DNA polymerase III, alpha subunit [Selenomonas noxia ATCC 43541]
          Length = 1258

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 190/1012 (18%), Positives = 336/1012 (33%), Gaps = 216/1012 (21%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  H+  S L+  +    +++  A    PA+AITD   + +  E    A A   + + 
Sbjct: 343  VELHAHTKMSALDAVVPPKMLVETAARWGWPAVAITDHGVVQAFPEAMNTARALKKKGVD 402

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG----KQ 127
               +       ++      +       I+ L     G   L +LVS  ++        + 
Sbjct: 403  IKVIY-----GMEGYLVDSSDDARAYHIIFLAKNKTGLYNLYKLVSLSHIRYFRGTKKRG 457

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+  + L++   EG+I+ +   +G + R           + +  F      +   N  
Sbjct: 458  RPRVPRAVLEQY-REGIIVGSACEAGELIRGIVAGRPDEELEEIAKFYDFLEIQPIHNND 516

Query: 188  RHRGYDRY----------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
              +  DR+             +V  LA     PL+AT +  FL+ ED     +L      
Sbjct: 517  FLKIDDRFPIHTDEDLRDINRKVDALAKKLNKPLIATCDVHFLNPEDAVYRAMLQKANG- 575

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRF 295
                  +R    P  YL+   EM++ F  L    A E  V   RR +  ++   PI    
Sbjct: 576  --YRDAER---QPPLYLRTTDEMLAEFDYLGAERAYECVVANPRRIADEVEHFLPIPDEL 630

Query: 296  IEKECDDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
                     +E  E +  R + + G                Q    RL+ EL  I R  F
Sbjct: 631  YAPTVPGADREIQEMSYARARKLYG------------ENLPQIVADRLELELKPILRHGF 678

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------- 399
            S  ++I    ++ +  +   VG  RGS   S  A  + +T+++PL               
Sbjct: 679  SALYIIAQRLVKKSNDDGYLVG-SRGSVGSSFVATMIGVTEVNPLPPHYRCRHCQYNKFI 737

Query: 400  ---------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                                        ++ F  FL  D   +PD D++F  D +    +
Sbjct: 738  DDGSVGSGFDLPPMDCPVCGTPLTKDGHNIPFAVFLGFDGDKVPDIDLNFSGDYQPVAHK 797

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            Y +  +G   V +  T   LQ K A         M Y +     K  P            
Sbjct: 798  YTEVLFGKMNVFRAGTISGLQDKNAYGYA-----MHYYEEQGETKGRPY----------- 841

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVR 550
                              +  + +   G+      HA GI++  R   +    P+ R   
Sbjct: 842  ------------------IEHMMRGCMGVKATTGQHAGGIMVVPRNMDVHYFTPIQRPAN 883

Query: 551  ---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
               SD   T F+   I +  L+K D LG    T+++   +         D   IPFDD  
Sbjct: 884  NMESDTLTTHFDYHSISE-RLVKLDILGHDDPTVIKMLEEL-----THRDPETIPFDDPA 937

Query: 608  TYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            T  + T+               GT GI +  +S  ++ ++   PDC  D++ +       
Sbjct: 938  TMSIFTSTEALGIRPEELGANMGTYGIPEFRTSFTQKMIDDSNPDCFADLVRISGFSHGT 997

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEA 710
             +                 +   LI       +  I  ++ +M       +    S    
Sbjct: 998  NVWLG--------------NAQDLIKAGTSTLKDAISARDDIMNYLMQNRIDPLLSFKTM 1043

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + +R+      K       E+  +G    GI +    +  ++      Y F ++HA AY 
Sbjct: 1044 ENVRKG-----KGIAPDVVEKLRAG----GIPEWYIESCQKI-----KYLFPRAHATAYV 1089

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQ----DARQF----- 812
            ++ Y+ A+ K HYP+ + AA  ++  D  +          +K+       +AR+      
Sbjct: 1090 MMGYRIAFCKVHYPLAYYAAYFSIRADEFDANIIAKGQTAVKQAIDALNAEAREHRGKLD 1149

Query: 813  -------------------NIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARH 852
                                    P  +     + F + +  +     A+ G+G   A+ 
Sbjct: 1150 NKKQDILIVLQLAWEMYLRGYSCEPVDLYESDAEKFILREKSLLPPFTALPGMGQKAAQA 1209

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ 903
            I+EA     F S+ED  +R         VL +    G LD     ++++L  
Sbjct: 1210 IVEARKYGHFISIEDLAARAHVPAPAIDVLRA---HGCLDGMTESNQVELFA 1258


>gi|319649525|ref|ZP_08003681.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
 gi|317398687|gb|EFV79369.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
          Length = 1441

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 180/943 (19%), Positives = 333/943 (35%), Gaps = 195/943 (20%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             L+  + A   GI+            DN+   N  +   P      LL  T EG + + +
Sbjct: 582  LLKMLKHADEKGIE------YHDQFNDNMGQGNAYQRARPA--HCTLLAQTEEGLKNIFK 633

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  +L +   +  RI  S LQ+    G+++ +G   G +       S    E     +
Sbjct: 634  LVSISHL-EYFYRVPRIPRSVLQK-HRAGILVGSGCDKGEVFEGMMQKSPDEVEDTAQFY 691

Query: 175  -------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   K ++   L + L R           +V+L    +LP+VAT N  +L+  D   
Sbjct: 692  DYLEVHPKAVYAHLLELELVRDEKALEEIIGNIVKLGEKLDLPVVATGNVHYLNPNDKIY 751

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFIL 285
              +L+        +        PD + +  +EM+  FS L +  A E  VE   R + ++
Sbjct: 752  RKILVNSQGG---ANPLNRHQLPDVHFRTTNEMLDAFSFLGKDKAKEIVVENTNRIADMI 808

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            +   PI       + +      + E+R+ +  G+  ++    +      +    RL+ EL
Sbjct: 809  EEIKPIKDDLYTPKIEGA----DEEMRSMSY-GMARKIYGDPL-----PEIVEARLEKEL 858

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------ 399
              I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL       
Sbjct: 859  KSIIGHGFAVIYLISHKLVKRSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCP 917

Query: 400  -----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQ 424
                                                 + FE FL      +PD D++F  
Sbjct: 918  ECKTSEFFNDGSVGSGFDLPDKDCPNCGAKYKKDGHDIPFETFLGFKGDKVPDIDLNFSG 977

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + +     Y +  +G E V +  T G++  K A   V                       
Sbjct: 978  EYQPRAHNYTKVLFGEEYVYRAGTIGTVADKTAYGYV----------------------- 1014

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQL 542
                 +A   D+  +   +    +DRL   +    G+ R    H  GI++      +   
Sbjct: 1015 -----KAYQQDNNLQ---IRGAEIDRL---ASGCTGVKRTTGQHPGGIIVVPDYMDIYDF 1063

Query: 543  VPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             P+     D  S+   T F+   I    L+K D LG    T+++   D        +D  
Sbjct: 1064 SPIQFPADDRTSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPK 1117

Query: 600  LIPFDDHETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             IP DD E                 ++   GTLGI +  +  +RQ LE  +P    +++ 
Sbjct: 1118 TIPTDDPEVMKIFSGPESLGVTEEQIMCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQ 1177

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +  L     +          N +E I +    +  ++     +++Y    +    L   +
Sbjct: 1178 ISGLSHGTDVWLG-------NAQELIHNNICNLSEVIGCRDDIMVY----LIYQGLEPAF 1226

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +    + +R+   K + +EM+ +            + K      +    K   Y F K+H
Sbjct: 1227 AFKIMESVRKG--KGLSDEMEAE------------MRKNEVPEWYIDSCKKIKYMFPKAH 1272

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------------- 800
            AAAY +++ + A+ K H+P+ + AA  T+  ++ +                         
Sbjct: 1273 AAAYVLMAVRIAYFKVHHPLLYYAAYFTVRAEDFDVDAMVKGSQAIRSRIEEINAKGLDA 1332

Query: 801  --------KIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
                     + +   +  +            +   +F +  N +     +I G+GT  A 
Sbjct: 1333 STKEKNLLTVMELALEMNERGFNFQKVDLYRSSANEFIIDGNSLIPPFNSIPGLGTNAAF 1392

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +I++A  +  F S ED   R    K+++ ++E L   G L+  
Sbjct: 1393 NIVKAREEGEFLSKEDLQQR---GKVSKTIIEYLDNHGCLESL 1432



 Score = 67.7 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ +       AIAITD     S  E         I+ + 
Sbjct: 340 VELHLHTPMSQMDAVSSVSALVSQAKKWGHKAIAITDHAVAQSFPEAYGAGKKNDIKILY 399


>gi|325290365|ref|YP_004266546.1| DNA polymerase III, alpha subunit [Syntrophobotulus glycolicus DSM
            8271]
 gi|324965766|gb|ADY56545.1| DNA polymerase III, alpha subunit [Syntrophobotulus glycolicus DSM
            8271]
          Length = 1250

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 185/1002 (18%), Positives = 342/1002 (34%), Gaps = 215/1002 (21%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S ++   S  +++ + A     AIAITD   + +  +  + A  +GI+ I+
Sbjct: 349  VELHLHTKMSEMDAVSSAQSLVRRAALWGHQAIAITDHGVVQAFPDAVESAEKSGIKVIL 408

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +   D                 +++L     G   L +LV+  ++ +   +  RI
Sbjct: 409  GMEGYLIEDDPQS---------QGYYHVIILAKNQTGLNNLYQLVTGSHI-EHFYRRPRI 458

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L++   EGLI+ +   +G + RA    +S    K++ +F      +   N Q    
Sbjct: 459  SKSQLKKY-REGLIIGSACEAGELMRAVLRQASWEDLKKIASFYDYLEIQPTGNNQFLIP 517

Query: 192  YDRYRESQ--------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                R+ +        +V+L      P+ AT +  FL  ED     +LMA          
Sbjct: 518  KGEIRDEEGLRDLNRTIVKLGDELGKPVAATCDVHFLDAEDEVFRRILMA---GKGYEDA 574

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            D        Y +   EM+  FS L E  A E  V      +  ++   P    F E +  
Sbjct: 575  D---TQAPLYFRTTDEMLEEFSYLGEDKAYEVVVTNTVAIAEGIENLKPFPDGFFEPK-- 629

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSG 355
                          + G   R+ + A+ K              + L  EL+ I    F+ 
Sbjct: 630  --------------IEGAAERIKEMALKKAAEQYGDPLPDTVAKALQKELHSIIGNGFAV 675

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------- 399
             +LI    ++ + ++   VG  RGS   S+ A    IT+++PL                 
Sbjct: 676  LYLIAHLLVKKSNEDGYLVG-SRGSVGSSLVATMTGITEVNPLPPHYHCTNPSCLYSEFL 734

Query: 400  ---------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                                         + FE FL      +PD D++F  + +    +
Sbjct: 735  TDGSAGSGVDLPDKTCPRCGLELSKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHK 794

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            Y +  +G E V +  T  ++  K A   V   L     + ++                  
Sbjct: 795  YTEEIFGKENVFRAGTISTVAEKTAFGFVKNYLDERSIKYNQ------------------ 836

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYR--- 547
                              L  + +   G+ R    H  G+++  +   +    P+ +   
Sbjct: 837  ----------------TELNRLVRGCAGVKRTTGQHPGGLMVIPKECDVYNFTPLQKPAN 880

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D +++   T F+   I    L+K D LG    T+++   DF       +D   I  DD  
Sbjct: 881  DSKTETITTHFDYHSI-SGRLVKLDILGHDDPTMIKMLEDFTG-----IDAQEIRLDDER 934

Query: 608  TYHLLT--------------TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            T  L +                GT G+ +  +  +RQ LE  +P     ++ +  L    
Sbjct: 935  TLSLFSSPEALGVKAEDIGSNTGTFGVPEFGTKFVRQMLEDTKPKTFSHLVRISGLSHGT 994

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             +                 +   L+     +   +I  ++ +M +  +  G    +A  +
Sbjct: 995  NVWLG--------------NAQDLVLNGTADISQIIACRDDIM-VYLIQKGLDPQKAFKI 1039

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    + D  +E       +  I             +   Y F K+HA AY +++
Sbjct: 1040 MEQVRKGKGLKADDVEEMLQFNVPQWYID----------SCQKISYMFPKAHAVAYVMMA 1089

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVE------------KIK------------------ 803
            ++ AW K + P  F AA  T+  +  +            KI                   
Sbjct: 1090 FRIAWFKLNCPEAFYAAFFTVRAEEFDAEMICQGLDHCKKIAAEMAGFGNKATQKEKGLL 1149

Query: 804  ---KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
               +   +     I +    +       F++ D  I    ++I+G+G T A  ++    +
Sbjct: 1150 TILELAIEMYCRGISLRKVDLWESDATTFQITDTGILPPFSSIQGLGETAANSLVALRRE 1209

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
                S+ED  +     K+++ V+E L   G L+     R QL
Sbjct: 1210 NKIRSVEDMQT---FGKISKPVVEVLQKHGCLNGL-PERNQL 1247


>gi|238927510|ref|ZP_04659270.1| DNA polymerase III, alpha subunit [Selenomonas flueggei ATCC 43531]
 gi|238884792|gb|EEQ48430.1| DNA polymerase III, alpha subunit [Selenomonas flueggei ATCC 43531]
          Length = 1255

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 188/1012 (18%), Positives = 332/1012 (32%), Gaps = 216/1012 (21%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  H+  S L+  +    +++  A    PA+AITD   + +  E    A A   + I 
Sbjct: 340  VELHAHTKMSALDAVVPPKVLVETAARWGWPAVAITDHGVVQAFPEAMNTARALAKKGID 399

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG----KQ 127
               +       ++              I+ L     G   L +LVS  ++        + 
Sbjct: 400  IKIIY-----GMEGYLVDGEDDARAFHIIFLAKNKTGLYNLYKLVSLSHIRYFRGTKKRG 454

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+  + LQ+   EG+I+ +   +G + R           + +  F      +   N  
Sbjct: 455  RPRVPRAVLQQ-HREGIIVGSACEAGELIRGIVAGRPNAELEEMAQFYDFLEIQPIHNND 513

Query: 188  RHRGYDRY----------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
              +  DR+             +V +LA     PL+AT +  FL+ ED         +  +
Sbjct: 514  FLKFDDRFPMQTDEDLRDINRKVDELARKLGKPLIATCDVHFLNPEDAVYR---AMIQKA 570

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRF 295
                  +R    P  YL+   EM++ F  L    A E  V   RR +   +   PI    
Sbjct: 571  NGYRDAER---QPPLYLRTTEEMLAEFDYLGAERAYECVVTNPRRIAEETERFLPIPDEL 627

Query: 296  IEKECDDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
                     +E  E +  R + + G                +    RL+ EL  I R  F
Sbjct: 628  YAPMVPGADREIQEMSYARARKLYG------------ENLPKIVSDRLELELKPILRHGF 675

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------- 399
            +  ++I    ++ +  +   VG  RGS   S  A  + +T+++PL               
Sbjct: 676  AALYIIAQRLVKKSNDDGYLVG-SRGSVGSSFVATMIGVTEVNPLPPHYRCPHCQYNRFI 734

Query: 400  ---------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                                        ++ F  FL  D   +PD D++F  D +    +
Sbjct: 735  DDGSVGSGFDLPSEDCPVCGTPLIKDGHNIPFAVFLGFDGDKVPDIDLNFSGDYQPVAHK 794

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            Y +  +G   V +  T   LQ K A         M Y +     K  P            
Sbjct: 795  YTEVLFGKMNVFRAGTIAGLQDKNAYGYA-----MHYYEDQGAAKGRPY----------- 838

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDVR 550
                              +  + +   G+      HA GI++  R +      P+ R   
Sbjct: 839  ------------------IEHMMRGCMGVKATTGQHAGGIMVVPRDMDVHYFTPIQRPAN 880

Query: 551  ---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
               SD   T F+   I +  L+K D LG    T+++   +         D   IPFDD  
Sbjct: 881  NMESDTLTTHFDYHSISE-RLVKLDILGHDDPTVIKMLEEL-----THRDPETIPFDDPA 934

Query: 608  TYHLLTTKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            T  + T+                T GI +  +S  ++ ++   PDC  D++ +       
Sbjct: 935  TMSIFTSTDALGITPEDLGANMGTYGIPEFRTSFTQKMIDDSNPDCFADLVRISGFSHGT 994

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEA 710
             +                 +   LI       +  I  ++ +M       +    S    
Sbjct: 995  NVWLG--------------NAQDLIKAGTSTLKDAISARDDIMNYLMQNGIDPLLSFKTM 1040

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + +R+      +       E+  +G    GI +    +  ++      Y F ++HA AY 
Sbjct: 1041 ENVRKG-----RGIAPDVVEKLRAG----GIPEWYIESCQKI-----KYLFPRAHATAYV 1086

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIKKFCQDARQF----- 812
            ++ Y+ A+ K HYP+ + AA  ++     +              I     +AR+      
Sbjct: 1087 MMGYRIAFCKVHYPLAYYAAYFSIRAAEFDANIISKGKDAVRAAIDTLLAEAREHRGKLD 1146

Query: 813  -------------------NIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARH 852
                                    P  +     + F + +  +     AI G+G   A+ 
Sbjct: 1147 NKKQDTLIVLQLAWEMYLRGFSCEPVDLYASDAEKFILHETSLLPPFTAIPGMGQKAAQA 1206

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC-FGYSRMQLLQ 903
            I+EA  D  F S+ED  +R          +E L   G LD     ++++L  
Sbjct: 1207 IVEARRDGRFISVEDLATRAHVAA---PAIEVLRTHGCLDGMMESNQVELFA 1255


>gi|323142330|ref|ZP_08077162.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Phascolarctobacterium sp. YIT 12067]
 gi|322413214|gb|EFY04101.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Phascolarctobacterium sp. YIT 12067]
          Length = 1241

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 189/1010 (18%), Positives = 339/1010 (33%), Gaps = 188/1010 (18%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-SQKACAAGIQPI 70
            V L  H+  S L+G   +  ++ +       A+AITD   +  A  F    A  + ++ I
Sbjct: 302  VELHCHTKMSKLDGLTPMEGLVKQAIRWGHKALAITDHGVV-QAFPFCFDAAEGSDLKLI 360

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTV----------PSIVLLVSTAEGYQRLIELVSRMY 120
             G +  + + D     +   T  P              I++L     G + L +LV+  +
Sbjct: 361  FGMEGYL-ISDRQTKDDAVDTENPDAATKGKSKISSHHIIILAKNEIGLRNLYQLVTISH 419

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-- 178
            L    K    +  + ++E   EGL++ +   +G + RA    +S    + +  F      
Sbjct: 420  LRYLNK-RPLLPRAVIEE-HREGLVLGSACEAGELYRAVRLGASDEELEEIAGFYDYLEI 477

Query: 179  ----GDRLYV-NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
                 ++  V          R    ++ +L        VAT +  FL+ ED +   +L A
Sbjct: 478  QPTGNNQFLVRENYCTEEDLREHNRKIYELGKRLGKLTVATCDVHFLNPEDAQLRAILQA 537

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPI 291
                          + P  YL    EM+  FS L E  A E  V    + + +++   P+
Sbjct: 538  GQGYKDAD------LQPPLYLHTTEEMLEEFSYLGEEAAYEVVVTNTNKIADMIERIKPV 591

Query: 292  LPR--FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              R           +    +    KA      +L           Q    RL  EL+ I 
Sbjct: 592  PDRDQLYSPSIPGAEDAVRDLSYAKAHEWYGEKL----------PQIVEDRLKMELDAII 641

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------- 399
               FS  + I    ++ +      VG  RGS   S  A  L IT+++ L+          
Sbjct: 642  GHGFSVLYYIAHKLVKHSIDRGYLVG-SRGSVGSSFVATMLDITEVNALKPHYRCPNCRH 700

Query: 400  -------------------------------FSLLFERFLNPDRMSMPDFDIDFCQ---- 424
                                            ++ F  FL      +PD D++F      
Sbjct: 701  SEFFMNNEVDSGFDLPPKDCPECGTRMLRDGHNIPFAVFLGFHGDKVPDIDLNFSGGIDP 760

Query: 425  ------DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
                    +    +Y +  +G + V +  T  ++  K A+  + +  +          K 
Sbjct: 761  DDPSAMSDQSVAHKYTEELFGRDNVCRAGTIATIANKTAIGFIRKYYE---------SKN 811

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR- 537
            +   PAH                         +  + +   G+ R    H  GI++  R 
Sbjct: 812  LHVHPAH-------------------------VAALVEGFAGIKRTTGQHPGGIMVVPRN 846

Query: 538  -PLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR- 592
              +  + PM R   D       T ++   I    L+K D LG     +L+    +L +  
Sbjct: 847  MDIHYITPMNRPADDKDGTTITTHYDYHSIND-RLVKLDILGHDDPMVLKMLEKYLQEDV 905

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                D   IP  D ET  +     +LG+   +         G+     + +  ++S  +P
Sbjct: 906  DPNFDPKKIPVGDEETMRIFQDTTSLGVTPEQIDSA-VGTFGIPECGTKFVRQMISDVQP 964

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSE 709
                 +V  +   +G +  ++    +    K     I  ++ VM       +    +   
Sbjct: 965  KKFSEVVRVSGYSHGTDVWLNNAQDLIKEGKPVAETISTRDDVMTHLISKGVEPSLAFKT 1024

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             + +R+    K   E    +           +        +    +   Y F K+HA AY
Sbjct: 1025 MEHVRKGKAAKKGLEPKMLEA----------MRAVNIPEWYIKSCEKVQYLFPKAHAVAY 1074

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS 820
             +++Y+ A+ K HYP EF AA  T+   + +          +K F ++  Q   +  P  
Sbjct: 1075 VLMAYRIAYCKVHYPKEFYAAYFTVRAKDFDYTHVSKGKSYVKNFIKNVYQQGFKASPLD 1134

Query: 821  -------------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                                       +  + F V +N +   LAA+ GVG   A+ I  
Sbjct: 1135 KTTVTYLELVNEMLERGLSFDKMDLYKSDPIKFLVTENGLRPPLAALGGVGENAAKSIAA 1194

Query: 856  ASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQ 903
            A   ++PF S ED   R     +N+ V+E L   G L D    +++ L  
Sbjct: 1195 ARDINRPFISQEDLRQR---SGVNKSVIEKLADMGVLGDLPENNQIDLFA 1241


>gi|239826652|ref|YP_002949276.1| DNA polymerase III PolC [Geobacillus sp. WCH70]
 gi|239806945|gb|ACS24010.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70]
          Length = 1435

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 181/954 (18%), Positives = 327/954 (34%), Gaps = 200/954 (20%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             +   + A   GI            + N +   +          + LL     G + L +
Sbjct: 576  LMRLLKDAQERGI--------LYHDELNERSKEEVSYQRSRPFHVTLLAQNDIGLKNLFK 627

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S LQ+   EG+++ +G   G +       + +  E+    +
Sbjct: 628  LVSLSHVK-YFYRVPRIPRSVLQQ-HREGILVGSGCDKGEVFDNMIQKAPEEVEEIAKFY 685

Query: 175  K--KLFGDRLY---VNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               ++    +Y   + +   +  +  +E   ++V L     +P+VAT N  +L+ ED   
Sbjct: 686  DFLEVHPPEVYKPLIEMDYVKDENMIKEIIRKIVMLGEKLNIPVVATGNVHYLNPEDKIY 745

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFIL 285
              +L+        +        PD Y +   EM+  FS L E  A E  V   ++ + ++
Sbjct: 746  RKILIHSQGG---ANPLNRYELPDVYFRTTDEMLKCFSFLGEEKAKEIVVMNTQKIADLI 802

Query: 286  QVHAPILPRFIEKECDDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                PI  +      +  ++E  E +  R K + G                +   QRL+ 
Sbjct: 803  GEVKPIKDKLYTPRIEGAEEEIREMSYRRAKEIYG------------DPLPEIVEQRLEK 850

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            EL  I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL     
Sbjct: 851  ELKSIIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYV 909

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                   + FE FL      +PD D++F
Sbjct: 910  CPNCKHSEFFNDGSVGSGFDLPDKNCPKCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNF 969

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              + +     Y +  +G + V +  T G++  K A   V                     
Sbjct: 970  SGEYQPRAHNYTKVLFGEDNVYRAGTIGTVADKTAYGFV--------------------- 1008

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLS 540
                   +  A D   +   L    +DRL   +    G+ R    H  GI++      + 
Sbjct: 1009 -------KGYASDLNLQ---LRSAEIDRL---AAGCTGVKRTTGQHPGGIIVVPDYMDIY 1055

Query: 541  QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+     D  S+   T F+   I    L+K D LG    T+++   D        +D
Sbjct: 1056 DFTPIQYPADDTSSEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGID 1109

Query: 598  LSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDI 643
               IP DD E   + ++               GTLGI +  +  +RQ LE  +P    ++
Sbjct: 1110 PKTIPTDDPEVMKIFSSTESLGVTPEQIMCNVGTLGIPEFGTRFVRQMLEETKPKTFSEL 1169

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            + +  L     +                 +   LI         VI  ++ +M +  +  
Sbjct: 1170 VQISGLSHGTDVWLG--------------NAQELIQNGTCTLSEVIGCRDDIM-VYLIYR 1214

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G   S A  +  ++ K      + ++E          + K      +    K   Y F K
Sbjct: 1215 GLEPSLAFKIMESVRKGKGLTPEFEEE----------MRKHDVPEWYIESCKKIKYMFPK 1264

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNI 814
            +HAAAY +++ + A+ K H+P+ + A+  T+  ++ +          I+K  ++     +
Sbjct: 1265 AHAAAYVLMAVRIAYFKVHHPLLYYASYFTVRAEDFDLDAMIKGSAAIRKRIEEINAKGL 1324

Query: 815  QIMPPS-------------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
                                             +   +F +  N +     AI G+GT  
Sbjct: 1325 NATAKEKSLLTVLEVALEMCERGFSFKNIDLYRSQATEFVIDGNSLIPPFNAIPGLGTNV 1384

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL 902
            A +I+ A  +  F S ED   R    K     LES    G LD    ++++ L 
Sbjct: 1385 ALNIVRAREEGEFLSKEDLQQRGKLSKTLIEYLES---RGCLDSLPDHNQLSLF 1435



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 38/94 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+  ++++      PAIA+TD   + S  E    A    ++ + 
Sbjct: 334 VELHLHTPMSQMDAVTSVTKLIEQAKKWGHPAIAVTDHAVVQSFPEAYSAAKKYDMKVLY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 394 GVEANIVDDGVPIAYNEAHRLLSEDTYVVFDVET 427


>gi|330990198|ref|ZP_08314176.1| Error-prone DNA polymerase 2 [Gluconacetobacter sp. SXCC-1]
 gi|329762744|gb|EGG79210.1| Error-prone DNA polymerase 2 [Gluconacetobacter sp. SXCC-1]
          Length = 632

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 176/630 (27%), Positives = 275/630 (43%), Gaps = 42/630 (6%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +V LQV ++YS L GA   + +  +       AI ITD N+L   +   + A   G++ 
Sbjct: 3   GYVPLQVATNYSFLRGASHPDELFARAGELGLRAIGITDHNSLAGIVRAHRAAGEHGVRL 62

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           ++GC                +     +P ++   +    Y RL  L++       GK   
Sbjct: 63  VVGC----------------RLDLEDMPPVLAYPTDRAAYGRLCHLLTLGRKR-AGKGGF 105

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
            +    L+  G   L++L   +      A        A  R+    +  G   YV L R 
Sbjct: 106 SLTWRDLEREGAGLLLILLPDAPDATLSA--------ALARMEAHARTGGLPGYVALVRR 157

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247
           +R  D  R +++  +A T  L  V T + L+ +   +   DVL  + H   V Q  DR  
Sbjct: 158 YRPGDAARLARIADMAMTAGLRPVVTGDVLYHNAGRHILQDVLGCIRHGCTVDQLGDRRE 217

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +L    E+   ++    A+  + EIA  C F L   A   P     E D      
Sbjct: 218 TCSGRHLVAEREIREDYAGHEAAIARSAEIAALCRFSLDDLAYQYP----DETDASGNTP 273

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
           +  L       L+ R   GA            +L  EL++IA + ++ YFL V   ++ A
Sbjct: 274 QETLAALVRTHLKDRYPAGA------PDGVLAQLRHELDLIASLDYAPYFLTVNTIVRHA 327

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           ++  I V  GRGS A S   Y L IT IDP+R  LLFERF++ +R   PD D+DF  DRR
Sbjct: 328 RQQGI-VCQGRGSAANSAVCYVLGITAIDPVRSGLLFERFVSAERREPPDIDVDFESDRR 386

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           +EVI+++   YG +R A   T    + K ALRDVG+AL +P      L + +    +   
Sbjct: 387 EEVIQWIYAHYGRDRAALCATVMRYRRKGALRDVGKALGVPEDVTATLSRHLTGLSSDGD 446

Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
           +L   AD +R     L DP +   L ++ +L G  R   TH  G V+    L  LVP+  
Sbjct: 447 TL---ADRARELGLNLDDPRLRLTLHLAGELIGFPRQLGTHPGGFVLTHDRLDDLVPIEP 503

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
               D  +  ++   I+    +K D LGL  L  ++++   L    G ++D++ IP +D 
Sbjct: 504 AAMEDRQIIVWDKDDIDHLRFMKVDVLGLGMLGCMRRAFALLETVHGTRMDMASIPPEDP 563

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            TY ++    T+G FQ+ES      L  ++
Sbjct: 564 ATYRMIARADTIGTFQIESRAQMSMLPRLK 593


>gi|295399848|ref|ZP_06809829.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
            C56-YS93]
 gi|312111640|ref|YP_003989956.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|294978251|gb|EFG53848.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
            C56-YS93]
 gi|311216741|gb|ADP75345.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1]
          Length = 1436

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 177/941 (18%), Positives = 322/941 (34%), Gaps = 174/941 (18%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             +   + A   GI            + N +   +          + LL     G + L +
Sbjct: 577  LMRMLKDAQERGI--------LYHDELNKRSKEEVSYQRSRPFHVTLLAQNDIGLKNLFK 628

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S LQ+   EG+++ +G   G +       + +  E+    +
Sbjct: 629  LVSLSHVK-YFYRVPRIPRSVLQQ-HREGILVGSGCDKGEVFDNMIQKAPEEVEEIAQFY 686

Query: 175  K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               ++    +Y     ++  +     +    ++V L     +P+VAT N  +L+ ED   
Sbjct: 687  DFLEVHPPEVYKPLIDMDYVKDENMIKEIIRKIVMLGEKLNIPVVATGNVHYLNREDKIY 746

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFIL 285
              +L+        +        PD Y +   EM+  FS L E  A E  V   ++ + ++
Sbjct: 747  RKILIHSQGG---ANPLNRYELPDVYFRTTDEMLECFSFLGEEKAKEIVVTNPQKIASLI 803

Query: 286  QVHAPILPRFIEKECDDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                PI  +      +  ++E  E +  R K + G                +   QRL+ 
Sbjct: 804  DEVKPIKDKLYTPRIEGAEEEIREMSYRRAKEIYG------------DPLPEIVEQRLEK 851

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            EL  I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL     
Sbjct: 852  ELKSIIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYV 910

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                   + FE FL      +PD D++F
Sbjct: 911  CPNCKHSEFFNDGSVGSGFDLPDKNCPKCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNF 970

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              + +     Y +  +G + V +  T G++  K A   V                     
Sbjct: 971  SGEYQPRAHNYTKVLFGEDNVYRAGTIGTVADKTAYGFV--------------------- 1009

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLS 540
                   +  A D   +   L    +DRL   +    G+ R    H  GI++      + 
Sbjct: 1010 -------KGYASDLNLQ---LRSAEIDRL---AAGCTGVKRTTGQHPGGIIVVPDYMDIY 1056

Query: 541  QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+     D  S+   T F+   I    L+K D LG    T+++   D        +D
Sbjct: 1057 DFTPIQYPADDTSSEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGID 1110

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               IP DD E   + ++  +LG+   E         G+       +  ++   RP     
Sbjct: 1111 PKTIPTDDPEVMKIFSSTESLGVTP-EQIMCNVGTLGIPEFGTRFVRQMLEETRPKTFSE 1169

Query: 658  IVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V  +   +G +  + +   LI         VI  ++ +M +  +  G   S A  +  +
Sbjct: 1170 LVQISGLSHGTDVWLGNAQELIQNGTCTLSEVIGCRDDIM-VYLIYRGLEPSLAFKIMES 1228

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + K      + ++E          + K      +    K   Y F K+HA AY +++ + 
Sbjct: 1229 VRKGKGLTPEFEEE----------MRKHNVPEWYIESCKKIKYMFPKAHATAYVLMAVRI 1278

Query: 777  AWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS------- 820
            A+ K HYP+ + A   T+  ++ +          I+K  ++     +             
Sbjct: 1279 AYFKVHYPLLYYATYFTVRAEDFDLDAMIQGSAAIRKRIEEINAKGLNATAKEKSLLTVL 1338

Query: 821  ------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
                                +   +F +  N +     AI G+GT  A +I+ A  +  F
Sbjct: 1339 EVALEMCERGFSFKNIDLYRSQATEFVIDGNSLIPPFNAIPGLGTNVALNIVRAREEGEF 1398

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL 902
             S ED   R    K     LES    G LD    ++++ L 
Sbjct: 1399 LSKEDLQQRGKLSKTLIEYLES---RGCLDSLPDHNQLSLF 1436



 Score = 76.2 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+  ++++      PAIA+TD   + +  E    A   G++ + 
Sbjct: 335 VELHLHTQMSQMDAVTSVTKLIEQAKKWGHPAIAVTDHAVVQAFPEAYSAAKKYGMKVLY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 395 GVEANIVDDGVPIAYNEAHRLLAEDTYVVFDVET 428


>gi|116334925|ref|YP_802420.1| DNA polymerase III alpha subunit [Candidatus Carsonella ruddii PV]
 gi|116235206|dbj|BAF35054.1| DNA polymerase III alpha subunit [Candidatus Carsonella ruddii PV]
          Length = 1113

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 265/978 (27%), Positives = 480/978 (49%), Gaps = 56/978 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL VH+ YS+++G + +  +L         +I+ITD   + S  E+ + +    I+PI
Sbjct: 4   FTHLNVHTEYSIIDGIIKIGKLLQIYNKLGIKSISITDILTIASFPEYYEYSLKKKIKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  + +                + +++L+     GY +LI+++S  +     +  V 
Sbjct: 64  IGTECFLLIN-------------GKILNLILIAKNYLGYLKLIKIISNAWRYGNIENGVF 110

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
           + L WL +   + LI++       ++  F   +       +      + +  Y  + R +
Sbjct: 111 LKLHWLYKFKNK-LIVIINLRYYLLESFF---NFCEFSIFIKELTINYNNNFYFEINRIN 166

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              +    ++++  +    + LVATN+  F+ ++D+  +   + +  + +  +K     +
Sbjct: 167 LSLEELINNKIIYFSKLFNIKLVATNSVKFIFKKDFPINLSKILICQNKIFEEKLFFDYS 226

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              Y+K   +M  +F D+ E++EN   I   C+ +   +   LP+         +K  +N
Sbjct: 227 NQQYIKTYKDMKKLFFDILESIENINLIILNCNVLFNFYKFNLPKIKISNFKIRKKIFDN 286

Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
                  AGL     +    K    + Y  R++ E+ +  ++    Y+LI+ +FI W +K
Sbjct: 287 ----LVKAGL----KKRIKKKNKQIKIYLNRVNKEVLLTKKLGLIDYYLIITEFIFWTRK 338

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            NI  GPGRGSG+ S+  Y+L ITDIDP+  +LLFERF + +R+ +PD D+DFC   RD 
Sbjct: 339 KNIISGPGRGSGSSSLLCYSLYITDIDPINENLLFERFFSSERLGIPDLDLDFCVLERDN 398

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
           +I ++ N YG+  ++QI+TF ++ AK+++RD+ RA+ M Y   +R  + +P      +  
Sbjct: 399 IISHLYNYYGYNNISQIVTFHTVSAKSSIRDLSRAIGMDYISGERFSRSVPFSIELSME- 457

Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
               ++   R     +     + +IS KLEG+ R+ S HA G+VI +  L+   P+  D 
Sbjct: 458 HIFRENISVRSYISKNHKCFEIWKISSKLEGIARNISKHAGGVVICNTGLNNFTPILFDE 517

Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
                +T +    ++  GLIKFDFLGLKTL+ +  +L  ++++           DD+ T+
Sbjct: 518 NE--CMTHYEKIILQDIGLIKFDFLGLKTLSTISLTLKMISEKNTG----EFFIDDYHTF 571

Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNG 667
            ++    T  IFQLES G+++ ++ +  + I D+I L+SLYRPGPI +  I  + NRKN 
Sbjct: 572 QMINNLDTELIFQLESYGIKKIIKKLPIENIFDLINLLSLYRPGPIQSGFINDFINRKNN 631

Query: 668 KEKIVSIHPLIDP-------MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
              + + HP  D        +L  T G+I++QEQV+Q+    +  S  +++ +  +M KK
Sbjct: 632 I--VKTYHPYSDCDFLQSKIILANTHGMILFQEQVLQLILFYTKCSNYDSEKIYASMIKK 689

Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            K ++   K  FI+  +K GI K  +   F ++ KFA Y FNK+HA +Y+ I YQTA++K
Sbjct: 690 SKIKLKISKLIFINECNKLGIDKKTSSKFFNIIEKFASYSFNKTHAHSYSKIVYQTAYLK 749

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
           ++Y +E+  +++ ++      I       +  ++    P +N    +FK+    I Y   
Sbjct: 750 SNYLLEYCLSNIYVDQLLGIDINNIINIIKSISVFFYKPDINLSDENFKIYKKGILYGFD 809

Query: 841 AIKGVGTTTARHIMEASADKPF--DSLEDFCSRVDS-KKLNRRVLESLVFAGALDCFGYS 897
            +  +       ++    +K F  ++ E FC      K   ++++E+L+F+G  DCF  +
Sbjct: 810 IVTFIDENFIDKVIYYR-NKLFYYNNFEMFCKIFSVFKIKKKKIIENLIFSGFFDCFKIN 868

Query: 898 RMQLLQS----LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
           R+ L  +     +NI        +  T K    F + K  F  K  L   S+        
Sbjct: 869 RVILFVNFQFIFENILTLNNEYSRTITYKFVRYFNYAKKFFLFKKILTISSIN----ILN 924

Query: 954 NEQRVLGFYFSGHPLDVY 971
            E+++L FY S +PL  Y
Sbjct: 925 IEKKILKFYTSFYPLVFY 942


>gi|290968855|ref|ZP_06560392.1| DNA polymerase III, alpha subunit, Gram-positive type [Megasphaera
            genomosp. type_1 str. 28L]
 gi|290781151|gb|EFD93742.1| DNA polymerase III, alpha subunit, Gram-positive type [Megasphaera
            genomosp. type_1 str. 28L]
          Length = 1199

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 179/986 (18%), Positives = 334/986 (33%), Gaps = 186/986 (18%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL--FSALEFSQKACAAGIQP 69
            V L +H+  S ++  +++  ++  +     PA+A+TD   +  F  L+      +  ++ 
Sbjct: 286  VELHLHTVMSDMDALITVKQLIKTVKKWHHPAVAVTDHGVVQSFPLLQEISTDKSNQVKV 345

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G +  +                     I++L     G + L  LVS  +L    +   
Sbjct: 346  IYGMEGYLF-----------DDRIDRSYHIIILAKNQVGIRNLYRLVSISHLKYIYRGRP 394

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS--SQVAEKRLLTF-----KKLFGDRL 182
            RI  + L E   EGLI+ +   +G + R+        +  ++    +     + +  +  
Sbjct: 395  RIPRAILNEY-REGLILGSACEAGELIRSMVQKKLPYEELKRIASWYDYLEIQPISNNGF 453

Query: 183  YV--NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             V   L +     R     V+++        VAT ++ FL+ ED    ++LM        
Sbjct: 454  LVREGLVKDEEGLRNINRTVLKIGDELGKLTVATGDAHFLNPEDKIYREILM---TGKGF 510

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEK 298
                  +  PD Y     EM+  FS L E  A E  +    + + +++   PI       
Sbjct: 511  EDA---QYQPDLYFHTTDEMLKEFSYLGEERAREVVITNTNKINEMIEDVRPI------- 560

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMK 352
                     +  L    +AG    L +    K Y        +    RL  E   I    
Sbjct: 561  --------PKETLYFPKIAGSSEALKKMCYDKAYKLYGNPLPKIVADRLTEEFTSILGNG 612

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------- 399
            F   + I    ++ +  +   VG  RGS   S  A    IT+++PL              
Sbjct: 613  FGVLYYIAHKLVKHSHDDGYLVG-SRGSVGSSFVATMADITEVNPLPPHYVCPSCQYSEF 671

Query: 400  ----------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
                                         ++ F  FL  D   +PD D++F  +   +  
Sbjct: 672  FIKGEVGGGFDLPHKKCPHCGASLHKDGHNIPFAIFLGFDGDKVPDIDLNFSGEYHPQAH 731

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +Y +  +G + V +  T G+++ K A   V +  +                         
Sbjct: 732  KYTEELFGKDNVFRAGTIGAVKDKTAYGYVMKWAEK------------------------ 767

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDV 549
                   R  ++ D  ++ L+       G+      H  G+++  R +      P+    
Sbjct: 768  -------RGIKVNDAYINSLVS---GCTGVKNTTGQHPGGVMVIPRDMDVHHFTPVQYPA 817

Query: 550  R---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                S +  T F+   IE   L+K D LG    T+++   D        VD   I FDD 
Sbjct: 818  NKKDSGIITTHFDYHSIE-GRLVKLDILGHDDPTVIRMLEDLTG-----VDARTIAFDDA 871

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ET  L  +   LG+   E  G      G+       +  ++   +P     +V  +   +
Sbjct: 872  ETMSLFCSPAALGLTPEEL-GSPVGSLGIPEFGTSFVRKMLLDTKPKTFSELVRISGFSH 930

Query: 667  GKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIK 722
            G +  + +   LI       +  +  ++ +M       +    S    + +R+  G    
Sbjct: 931  GTDVWLNNAQDLITSGTVPLKEAVSTRDDIMNYLIQHGIQPKTSFKVMENVRKGKGIDKV 990

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             ++ ++   F        I      +  ++      Y F ++HA AY +++++ AW K H
Sbjct: 991  NKVGEKTTDFEGELKAGNIPDWFIESCKKI-----GYLFPRAHAVAYVMMAFRIAWFKIH 1045

Query: 783  YPVEFLAASMTLEMDNV------------EKIKKFCQ---------------------DA 809
            YP+ + AA  T+                 +K+ K  +                     + 
Sbjct: 1046 YPLAYYAAYFTIRAKAFKLSAMIHGLEVQKKVMKDIEAKGTKASKIETDLYSALELAVEM 1105

Query: 810  RQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
                   +   ++      F + D +I     AI G+G   A  I+ A    PF S ED 
Sbjct: 1106 SLRGFSFLNVDIHRSQAKKFIICDGKILPPFTAIDGLGDNVAEQIVAAREKAPFSSKEDL 1165

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCF 894
              R    K+ + +L+ +  AG L   
Sbjct: 1166 RLR---GKIGQSLLDVMTEAGCLKEL 1188


>gi|149002436|ref|ZP_01827370.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP14-BS69]
 gi|147759373|gb|EDK66365.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP14-BS69]
          Length = 624

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 197/674 (29%), Positives = 320/674 (47%), Gaps = 76/674 (11%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3   AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++ + + D                ++  L  ++ GYQ+L++L +      QG+++  +
Sbjct: 63  GLEMTVFVDD-------------QEVNLRFLALSSVGYQQLMKLSTA---KMQGEKTWSV 106

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              +L++I    +I+                               F     + L    G
Sbjct: 107 LSQYLEDIA---VIV-----------------------------PYFDRVESLEL----G 130

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            D Y       LA     P++           D E   VL A+  +  + +   P  +  
Sbjct: 131 CDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTAIKENLPLREV--PLRSRQ 188

Query: 252 HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               + S +  +F    P+AL+N  ++    S+ L +    LPRF               
Sbjct: 189 DVFISASSLEKLFQERFPQALDNLEKLISGISYDLDISL-KLPRFNP------------- 234

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
               AV  L  R   G + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N
Sbjct: 235 -ARPAVEELRERAELGLVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSN 293

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + 
Sbjct: 294 GYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDF 353

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
           IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           
Sbjct: 354 IRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLK---S 410

Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
           A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+     
Sbjct: 411 AYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPL--KYG 468

Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D ET 
Sbjct: 469 DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETL 528

Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E
Sbjct: 529 ALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQE 588

Query: 670 KIVSIHPLIDPMLK 683
           ++  + P+++ +  
Sbjct: 589 EVTVLDPVLEDIFG 602


>gi|255284409|ref|ZP_05348964.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella
            formatexigens DSM 14469]
 gi|255265034|gb|EET58239.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella
            formatexigens DSM 14469]
          Length = 1530

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 185/941 (19%), Positives = 310/941 (32%), Gaps = 186/941 (19%)

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQ------GKTPFPTVPSIVLLVSTAEGYQRLI 113
               C AGI       L +   D     N+       +        +++L     G   L 
Sbjct: 657  DAECTAGIYLKFMEMLKLQGADTFDQVNELGSASLDQIKKLPTYHVIILAKNDVGRVNLY 716

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             LVS  +L     +  RI  S L +   EGLI+ +   +G + RA     S+    R++ 
Sbjct: 717  RLVSFSHL-QYYNRRPRIPKSALNQY-REGLIVGSACEAGELFRAVLEGKSEPEIARIVD 774

Query: 174  FKKLFGDRLYVNLQRHRGYD---------RYRESQVVQLAYTHELPLVATNNSLFLSEED 224
            F      +   N       D         R    ++V+L      P+VAT +  FL+ ED
Sbjct: 775  FYDYLEIQPIGNNAFLLKEDNDINSEEDLRELNRKIVRLGEQFNKPVVATCDVHFLNPED 834

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIA 278
                 ++MA        +          +L+   EM+  F+ L         + NT +IA
Sbjct: 835  EIYRRIIMAGKGFKDADE------QAPLFLRTTEEMLKEFAYLGSEKAEEVVITNTNKIA 888

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
              C  I  V     P  I         + +  LR            +             
Sbjct: 889  DMCEKISPVRPDKCPPVIP--------DSDKTLRTICYNRAHQIYGEKL------PPIVT 934

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL+ ELN I    F+  ++I    +  +  +   VG  RGS   S  A    IT+++PL
Sbjct: 935  ERLERELNSIISNGFAVMYIIAQKLVWKSNADGYLVG-SRGSVGSSFVATMAGITEVNPL 993

Query: 399  R---------------------------------------------FSLLFERFLNPDRM 413
                                                          F + FE FL     
Sbjct: 994  SPHYYCEDCHYYDFDSDEVKAYSGRAGCDMPDKNCPVCGAPLRKEGFDIPFETFLGFKGN 1053

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D++F  D +    RY +  +G     +  T G+L  K A   V +  +  + Q  
Sbjct: 1054 KEPDIDLNFSGDYQGNAHRYTEVIFGEGHTFRAGTVGTLADKTAFGYVKKYYE-EHGQRK 1112

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            R C                                  +  I +   G+ R    H  GI+
Sbjct: 1113 RTC---------------------------------EINRIVEGCVGVRRTTGQHPGGII 1139

Query: 534  IGD--RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            +      +    P+     D  +D+  T F+   I+   L+K D LG    T+++   D 
Sbjct: 1140 VLPHGEEIYSFTPIQHPANDTETDIITTHFDYHSIDH-NLLKLDILGHDDPTMIRMLEDL 1198

Query: 589  LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
                        IP DD     L  +   LG+   E  G      G+     E +I ++ 
Sbjct: 1199 TGLHA-----QDIPLDDKSVMSLFQSTEALGVTPEEILGCPLGSLGIPEFGTEFVIQMLQ 1253

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---G 704
              +P    ++V  +   +G +  + +   LI          I  ++ +M     +     
Sbjct: 1254 DTKPQSFSDLVRISGLSHGTDVWLGNAQTLIQEGKATISTAICTRDDIMTYLIRMGLDSE 1313

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
             S +  + +R+  G K + E +              + +    + +    K   Y F K+
Sbjct: 1314 LSFTIMESVRKGKGLKPEWEKE--------------MKEHDVPDWYIWSCKKIKYMFPKA 1359

Query: 765  HAAAYAVISYQTAWMKT--------------------------H-----YPVEFLAAS-- 791
            HAAAY +++Y+ A+ K                           H     +  E+      
Sbjct: 1360 HAAAYVMMAYRIAYCKVYYPLAYYAAYFSIRASAFNYELMCLGHERLLAHMKEYKKNYDS 1419

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGVGTTTA 850
            +T +  +  K  K  Q+      + +P  +N      F++ D ++  SL +I G+G   A
Sbjct: 1420 LTKKEQDTYKDMKSVQEMYARGFEFVPIDINKADASRFQIVDGKLMPSLCSIDGLGDKAA 1479

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              ++EA  D PF S +DF  R    K    V+  L   G L
Sbjct: 1480 EAVVEAVKDGPFLSKDDFWQRTKVPKSVIDVMSDLGLLGDL 1520



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 10/108 (9%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++G   + +I+ +      PAIAITD      A++    A    I+ I 
Sbjct: 400 VELHCHTKMSDMDGVSEVKDIVKQAYKWGHPAIAITDH----GAVQAFPDANHV-IEDID 454

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ--RLIELVS 117
               D   +D+ ++T            ++  V   EGY    L +LV+
Sbjct: 455 RAYRDAYKEDHPEVTKDELKKISHPFKVLYGV---EGYLVDDLQKLVT 499


>gi|52080261|ref|YP_079052.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580]
 gi|52785638|ref|YP_091467.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580]
 gi|52003472|gb|AAU23414.1| DNA polymerase III (alpha subunit) [Bacillus licheniformis ATCC
            14580]
 gi|52348140|gb|AAU40774.1| PolC [Bacillus licheniformis ATCC 14580]
          Length = 1438

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 172/930 (18%), Positives = 328/930 (35%), Gaps = 169/930 (18%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             ++  + A    I           + +N+  +N  +   P      LL     G + L +
Sbjct: 579  LVKMLKDAAEKNI------LYHDQLNENMGQSNAYQRSRP--YHATLLAVNETGLKNLFK 630

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 631  LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDKGEVFEGMMQKSPEEVEDIASFY 688

Query: 175  K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               ++    +Y     + L R     +   + + +L     +P+VAT N  +L+ ED   
Sbjct: 689  DYLEVMPPEVYRHLLQLELVRDEKALKEIIANITKLGEKLNIPVVATGNVHYLNPEDKIY 748

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFIL 285
              +L++       +        P+ + ++  EM+  FS L E  A E  V+  R  S  +
Sbjct: 749  RKILVSSQGG---ANPLNRHELPNVHFRSTDEMLEAFSFLGEEKAKEIVVKNTRMISERI 805

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            +   PI       + +      ++E+R  +         +         +   +R++ EL
Sbjct: 806  EEIKPIKDDLYTPKIEGA----DDEIRRMSYEKARSIYGEDL------PEIVEKRIEKEL 855

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------ 399
              I    F+  +LI    ++ +  +   VG  RGS   S+ A    IT+++PL       
Sbjct: 856  KSIIGHGFAVIYLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLPPHYVCP 914

Query: 400  -----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQ 424
                                                 + FE FL      +PD D++F  
Sbjct: 915  DCRHSEFFNDGSVGSGFDLPDKDCPKCGAAYRKDGHDIPFETFLGFKGDKVPDIDLNFSG 974

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + +     Y +  +G + V +  T G++  K A   V                       
Sbjct: 975  EYQPHAHNYTKVLFGEDNVYRAGTIGTVAEKTAYGYV----------------------- 1011

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQL 542
                 +  A+D+      +    +DRL+   Q   G+ R    H  GI++      +   
Sbjct: 1012 -----KGYANDNNL---HMRGAEIDRLV---QGCTGVKRTTGQHPGGIIVVPDYMDIYDF 1060

Query: 543  VPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             P+        S+   T F+   I    L+K D LG    T+++   D        +D  
Sbjct: 1061 SPIQFPADATDSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPK 1114

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD E   +     +LG+ + E  G +    G+       +  ++   +P     +V
Sbjct: 1115 TIPTDDPEVMKIFQGTESLGVTE-EQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELV 1173

Query: 660  VYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   +G +  + +   LI   + E   VI  ++ +M +  +  G   S A  +   + 
Sbjct: 1174 QISGLSHGTDVWLGNAQELIHNNICELSEVIGCRDDIM-VYLIYQGLEPSLAFKIMEFVR 1232

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K      + ++E          +      + +    K   Y F K+HAAAY +++ + A+
Sbjct: 1233 KGKGLTPEWEEE----------MKNNNVPDWYIDSCKKIKYMFPKAHAAAYVLMAVRIAY 1282

Query: 779  MKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS--------- 820
             K H+P+ + AA  T+  D+ +          I+    D     +   P           
Sbjct: 1283 FKVHHPLLYYAAYFTVRADDFDIETMIKGSTAIRAVMDDINSKGLDASPKEKSLLTVLEL 1342

Query: 821  ----------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
                              +   +F +  N +     +I G+GT  A +I++A  +  F S
Sbjct: 1343 ALEMCERGFSFQKVDLYRSSASEFIIDGNSLIPPFNSIPGLGTNAALNIVKAREEGEFLS 1402

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             ED   R    K+++ ++E L   G L+  
Sbjct: 1403 KEDLQKR---GKVSKTIMEYLERHGCLESL 1429



 Score = 76.2 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 60/177 (33%), Gaps = 10/177 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++   S+  ++++      PAIA+TD   + S  +    +   G++ I 
Sbjct: 336 VELHLHSPMSQMDAVSSIGKLVEQAKKWGHPAIALTDHAVVQSFPDAFAASKKHGVKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G + ++         N           +V  V T  G   + + +  +  +      +  
Sbjct: 396 GLEANLVDDGVPIAYNPVHRLLEEETYVVFDVET-TGLSAVYDTIIELAAVKVKGGEIIE 454

Query: 132 CLSWLQEIGTEG---LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                          +I LTG              +   E+ +  FK+  GD   V 
Sbjct: 455 RFERFANPHRPLSATIIELTG------ITDDMLKDAPEVEEVIRDFKEWVGDHTLVA 505


>gi|256003329|ref|ZP_05428320.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360]
 gi|281417714|ref|ZP_06248734.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
 gi|255992619|gb|EEU02710.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360]
 gi|281409116|gb|EFB39374.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
 gi|316940249|gb|ADU74283.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 1313]
          Length = 1442

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 172/899 (19%), Positives = 317/899 (35%), Gaps = 179/899 (19%)

Query: 94   PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG 153
                  ++LV    G + L ++VS+ +L +   +  R+    L  +  EGLI+ +   +G
Sbjct: 615  ANSYHAIILVKNYVGLRNLYKIVSKTHL-EYFHKRPRLPRKLLM-MHREGLILGSACEAG 672

Query: 154  PIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAY 205
             + RA   N  +    R++ F      + L  +R  V   +    +  +    ++V L  
Sbjct: 673  ELYRAILENKDEDEISRIVKFYDYLEIQPLGNNRFLVESGKVNSEEDLKNINRKIVALGE 732

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
             +  P+VAT +  F+  +D     +LMA    +              Y +   EM+  F 
Sbjct: 733  KYNKPVVATCDVHFMDPQDEVFRRILMAGQGFSDADN------QAPLYFRTTDEMLEEFE 786

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
             L         + NT  IA  C  IL +     P  IE   ++I+   EN+ R       
Sbjct: 787  YLGREKCYEVVVTNTNLIADMCEDILPIPEGTFPPKIEGAEEEIRMLAENKARE------ 840

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                    I      +   +R++ ELN I +  FS  ++I    +  +  +   VG  RG
Sbjct: 841  --------IYGDPLPEIVEKRMEKELNSIIKNGFSVMYIIAQKLVWKSLSDGYLVG-SRG 891

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S  AY + IT+++ L                                         
Sbjct: 892  SVGSSFVAYLIGITEVNSLPPHYICENCKYSEFIEDGSYGCGFDMPEKECPRCGKILKKD 951

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
             + + FE FL  +    PD D++F  + +    +Y +  +G   V +  T G++  K A 
Sbjct: 952  GYDIPFETFLGFEGDKEPDIDLNFSGEYQPIAHKYTEELFGVGHVYRAGTIGTIAEKTAY 1011

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V   L                                 R     +  ++RL+   +  
Sbjct: 1012 GFVKNYLDE-------------------------------RGIVATNAEINRLV---KGC 1037

Query: 519  EGLYRHASTHAAGIVIG--DRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             G+ R    H  G++I   DR + +  P+     D  S    T F+   I    L+K D 
Sbjct: 1038 TGVKRTTGQHPGGVMIVPQDREIYEFCPIQYPADDPDSGTITTHFDYHSI-SGRLLKLDI 1096

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            LG    T+++   D             IP  +  T  + ++   LGI   + +       
Sbjct: 1097 LGHDDPTVIKMLEDLTGVNAR-----TIPIGEKRTMGIFSSTEPLGIRPEDIN-CPVGTF 1150

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQ 692
             +     + +  ++   +P     ++  +   +G +  ++    L+   +     VI  +
Sbjct: 1151 AIPEFGTKFVRQMLVDTKPKTFSELIRISGLSHGTDVWLNNAQDLVRNNIASLSEVICTR 1210

Query: 693  EQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            + +M            +    + +R+  G K +               +  + +    + 
Sbjct: 1211 DDIMLNLIHYGLPNKTAFKIMEDVRKGKGLKEE--------------YEQIMREKKVPDW 1256

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------- 800
            +    K   Y F K+HAAAY +++++ AW K +YP  F A   T+  D  +         
Sbjct: 1257 YIESCKKIKYMFPKAHAAAYVMMAFRIAWFKVYYPEAFYATYFTVRADEFDASMMCHGKE 1316

Query: 801  ----KIKKF--------------------CQDARQFNIQIMPPSVNTP-CVDFKVGDNRI 835
                KIK++                      +     I+ +P  +     V FK+  + +
Sbjct: 1317 KVKNKIKEYELKGNNMTQKEKNTLTILEVANEMYARGIKFLPIDIYKSDAVKFKIEKDGL 1376

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               L A++G+G + A  I EA     F S++D   R    K+++ V+E L   G LD  
Sbjct: 1377 RPPLNALQGLGVSAAHSIAEARNQGEFLSVDDLRIRA---KVSKTVIEILQQNGCLDGL 1432



 Score = 81.2 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++G  S+  ++ + A     AIA+TD   + +  E  + A    I+ I 
Sbjct: 344 VELHLHTQMSAMDGVTSVGELIKRAAQWGHKAIAVTDHGVVQAYPEACEAAKKNKIKVIY 403


>gi|143342|gb|AAA22666.1| polymerase III [Bacillus subtilis]
          Length = 1437

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 178/932 (19%), Positives = 336/932 (36%), Gaps = 173/932 (18%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 578  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 629

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 630  LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 687

Query: 175  K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                    +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 688  DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 747

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFIL 285
              +L++       +        P  + +   EM+  FS L E  A E  V   ++ + ++
Sbjct: 748  RKILISSQGG---ANPLNRHELPKVHFRTTDEMLEAFSFLGEEKAKEIVVTNTQKVASLV 804

Query: 286  QVHAPILPRFIEKECDDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                PI       + +   +E  E +  R +++ G E+             +    R++ 
Sbjct: 805  DDIKPIKDDLYTPKIEGADEEIRESSYQRARSIYGEEL------------PEIVEARIEK 852

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            EL  I    F+  +LI    ++ +  +   VG  RGS   S+ A    IT+++PL     
Sbjct: 853  ELKSIIGHGFAVIYLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLPPHYV 911

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                   + FE FL      +PD D++F
Sbjct: 912  CPECQHSEFFNDGSVGSGFDLPDKTCPHCGTPLKKDGHDIPFETFLGFKGDKVPDIDLNF 971

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              + + +   Y +  +G + V +  T G++  K A   V                     
Sbjct: 972  SGEYQPQAHNYTKVLFGEDNVYRAGTIGTVAEKTAYGYV--------------------- 1010

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLS 540
                   +  A+D+      +    +DRL+   Q   G+ R    H  GI++      + 
Sbjct: 1011 -------KGYAEDNNL---HMRGAEIDRLV---QGCTGVKRTTGQHPGGIIVVPDYMDIY 1057

Query: 541  QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+        S+   T F+   I    L+K D LG    T+++   D        +D
Sbjct: 1058 DFSPIQFPADATGSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGID 1111

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               IP DD E   +     +LG+ + E  G +    G+       +  ++   +P     
Sbjct: 1112 PKTIPTDDPEVMKIFQGTESLGVTE-EQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSE 1170

Query: 658  IVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V  +   +G +  + +   LI   + E   VI  ++ +M +  +  G   S A  +   
Sbjct: 1171 LVQISGLSHGTDVWLGNAQDLIHNNICELSEVIGCRDDIM-VYLIYQGLEPSLAFKIMEF 1229

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + K      + ++E          +      + +    K   Y F K+HAAAY +++ + 
Sbjct: 1230 VRKGKGLTPEWEEE----------MKNNNVPDWYIDSCKKIKYMFPKAHAAAYVLMAVRI 1279

Query: 777  AWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVN----- 822
            A+ K H+ + + AA  T+  D+ +          I+   +D     +   P   N     
Sbjct: 1280 AYFKVHHALLYYAAYFTVRADDFDIDTMIKGSTAIRAVMEDINAKGLDASPKEKNLLTVL 1339

Query: 823  --------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
                                +   +F +  N +     +I G+GT  A +I++A  +  F
Sbjct: 1340 ELALEMCERGYSFQKVDLYRSSATEFIIDGNSLIPPFNSIPGLGTNAALNIVKAREEGEF 1399

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             S EDF  R    K+++ +LE L   G L+  
Sbjct: 1400 LSKEDFEKR---GKVSKTILEYLDRHGCLESL 1428



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++    +  ++++       AIA+TD   + S  +    A   GI+ I 
Sbjct: 335 VELHLHSPMSQMDAVTGIGKLVEQAKKWGHEAIALTDHAVVQSFPDAYSAAKKHGIKMIY 394

Query: 72  GC 73
           G 
Sbjct: 395 GM 396


>gi|325524831|gb|EGD02789.1| error-prone DNA polymerase [Burkholderia sp. TJI49]
          Length = 462

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 164/466 (35%), Positives = 248/466 (53%), Gaps = 14/466 (3%)

Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
            +   +++  EL +IA++ +  +FL V D +++A+  NI +  GRGS A SV  Y L IT
Sbjct: 2   PEKVAKQIRHELALIAKLNYEPFFLTVYDIVKFARSQNI-LCQGRGSAANSVVCYCLGIT 60

Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
           ++DP + + LFERF++ +R   PD D+DF   RR+EVI+++  KYG +R A      + +
Sbjct: 61  EVDPDQSTTLFERFISEERGEPPDIDVDFEHQRREEVIQHIYKKYGKDRAALAAAVSTYR 120

Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
            +  LR+VG+AL +    VDR+ K           LQ  A          A P +    +
Sbjct: 121 PRGVLREVGKALGVDPMLVDRVAKGHRWFDGSRDLLQKFAAVG----LDPATPLIHAWAD 176

Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
           ++ +L    RH S H+ G VI    L++LVP+         V Q++   +E   L+K D 
Sbjct: 177 LAARLLNFPRHLSQHSGGFVISRGKLTRLVPVENAAMDGRRVIQWDKDDLESLKLMKVDV 236

Query: 574 LGLKTLTLLQKSLDFL------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
           L L  L+ L ++ D        A  G    L  IP +D  TY ++    T+G+FQ+ES  
Sbjct: 237 LALGMLSALHRAFDMRTAWRGPAADGKPFTLKHIPQEDKATYDMICRADTVGVFQIESRA 296

Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKET 685
               L  +QP    D++  V++ RPGPI       Y  R+ G EKI      + P L+ T
Sbjct: 297 QMSMLPRLQPRTYYDLVIEVAIVRPGPIQGGAVHPYLRRRQGLEKISYPKDDLKPALERT 356

Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKT 744
           +GV I+QEQVMQIA + +G++  EAD LRRAM   K K  ++K   + + G  + G    
Sbjct: 357 KGVPIFQEQVMQIAMIAAGFTAGEADELRRAMAAWKRKGNLEKYHAKIVDGMRERGYPPD 416

Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            A  IFE +  F DYGF +SHAA++A ++Y ++W+K H P  FLAA
Sbjct: 417 FAEQIFEQIKGFGDYGFPESHAASFAKLAYASSWLKCHDPAIFLAA 462


>gi|296330873|ref|ZP_06873348.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
            6633]
 gi|305674391|ref|YP_003866063.1| DNA polymerase III subunit alpha [Bacillus subtilis subsp. spizizenii
            str. W23]
 gi|296151878|gb|EFG92752.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
            6633]
 gi|305412635|gb|ADM37754.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp.
            spizizenii str. W23]
          Length = 1437

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 176/932 (18%), Positives = 328/932 (35%), Gaps = 173/932 (18%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 578  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 629

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 630  LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDVASFY 687

Query: 175  K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                    +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 688  DYLEVQPPEVYRHLLELELVRDEKSLKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 747

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFIL 285
              +L++       +        P  + +   EM+  FS L E  A E  V   ++ + ++
Sbjct: 748  RKILISSQGG---ANPLNRHELPKVHFRTTDEMLEAFSFLGEEKAKEIVVTNTQKVASLI 804

Query: 286  QVHAPILPRFIEKECDDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                PI       + +   +E  E +  R +++ G                +    R++ 
Sbjct: 805  DDIKPIKDDLYTPKIEGADEEIREMSYQRARSIYG------------EQLPEIVEARIEK 852

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            EL  I    F+  +LI    ++ +  +   VG  RGS   S+ A    IT+++PL     
Sbjct: 853  ELKSIIGHGFAVIYLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLPPHYV 911

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                   + FE FL      +PD D++F
Sbjct: 912  CSECQHSEFFNDGSVGSGFDLPDKICPHCGTPLKKDGHDIPFETFLGFKGDKVPDIDLNF 971

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              + + +   Y +  +G + V +  T G++  K A   V                     
Sbjct: 972  SGEYQPQAHNYTKVLFGEDNVYRAGTIGTVAEKTAYGYVKGYAGDH-------------- 1017

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLS 540
                                +    VDRL+   Q   G+ R    H  GI++      + 
Sbjct: 1018 -----------------NLHMRGAEVDRLV---QGCTGVKRTTGQHPGGIIVVPDYMDIY 1057

Query: 541  QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+        S+   T F+   I    L+K D LG    T+++   D        +D
Sbjct: 1058 DFSPIQFPADATGSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGID 1111

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               IP DD E   +     +LG+ + E  G +    G+       +  ++   +P     
Sbjct: 1112 PKTIPTDDPEVMKIFQGTESLGVTE-EQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSE 1170

Query: 658  IVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V  +   +G +  + +   LI   + E   VI  ++ +M +  +  G   S A  +   
Sbjct: 1171 LVQISGLSHGTDVWLGNAQELIHNNICELSEVIGCRDDIM-VYLIYQGLEPSLAFKIMEF 1229

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + K      + ++E          +      + +    K   Y F K+HAAAY +++ + 
Sbjct: 1230 VRKGKGLTPEWEEE----------MKNNNVPDWYIDSCKKIKYMFPKAHAAAYVLMAVRI 1279

Query: 777  AWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVN----- 822
            A+ K H+ + + AA  T+  D+ +          IK   +D     +   P   N     
Sbjct: 1280 AYFKVHHALLYYAAYFTVRADDFDIDTMIKGSTAIKAVMEDINSKGLDASPKEKNLLTVL 1339

Query: 823  --------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
                                +   +F +  N +     +I G+GT  A +I++A  +  F
Sbjct: 1340 ELALEMCERGYSFQKVDLYRSSATEFIIDGNSLIPPFNSIPGLGTNAALNIVKAREEGEF 1399

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             S ED   R    K+++ +LE L   G L+  
Sbjct: 1400 LSKEDLQKR---GKVSKTILEYLDRHGCLESL 1428



 Score = 76.2 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/379 (13%), Positives = 118/379 (31%), Gaps = 52/379 (13%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++    +  ++++       AIA+TD   + S  +    A   GI+ I 
Sbjct: 335 VELHLHSPMSQMDAVTGIGKLVEQAKKWGHEAIALTDHAVVQSFPDAYSAAKKHGIKMIY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G + ++         N           +V  V T  G   + + +  +  +      +  
Sbjct: 395 GMEANLVDDGVPIAYNAAHRLLEEETYVVFDVET-TGLSAVYDTIIELAAVKVKGGEIID 453

Query: 132 CLSWLQEIGTEG---LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL------ 182
                          +I LTG     I      ++  V +  +  F++  GD +      
Sbjct: 454 KFEAFANPHRPLSATIIELTG-----ITDDMLRDAPDVVD-VIRDFREWIGDDILVAHNA 507

Query: 183 -----YVNLQRHRGYD--------------------RYRESQVVQLAYTHELPLVATNNS 217
                ++N+   +  +                     ++  ++  L    ++ L   + +
Sbjct: 508 SFDMGFLNVAYKKLLEVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQHHRA 567

Query: 218 LF-LSEEDYEAHDVLMAVAHS--TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
           ++      Y    +L   A        + +      + Y ++R    ++ +     L+N 
Sbjct: 568 IYDTEATAYLLLKMLKDAAEKGIQYHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNL 627

Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA----- 329
            ++            P +PR   ++  +         R +   G+  +  +         
Sbjct: 628 FKLVSLSHIHYFYRVPRIPRSQLEKYREGLLIGSACDRGEVFEGMMQKSPEEVEDVASFY 687

Query: 330 ---KGYHAQDYRQRLDFEL 345
              +    + YR  L+ EL
Sbjct: 688 DYLEVQPPEVYRHLLELEL 706


>gi|227824506|ref|ZP_03989338.1| DNA polymerase III [Acidaminococcus sp. D21]
 gi|226905005|gb|EEH90923.1| DNA polymerase III [Acidaminococcus sp. D21]
          Length = 1210

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 180/983 (18%), Positives = 346/983 (35%), Gaps = 181/983 (18%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  H+  S ++G   +  ++D  A     A+AITD   + +      +A         
Sbjct: 300  IELHCHTKMSKMDGLTPIEELVDTAAKWGHKALAITDHGVVQAYPFAYDEAVK-----FK 354

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
              +L   ++  L  + + K  +     I+LL  +  G + L  LVS  +L   G +  R 
Sbjct: 355  DFKLIFGVEGYLCHSKEDKKNY----HIILLAKSFAGLRNLYRLVSLSHLQYFGGKPKRP 410

Query: 132  CLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
             ++  L E   + +I+ +  ++G + RA    +S     ++  F      +   N Q   
Sbjct: 411  RMTKGLIEQYRDDIIIGSACAAGEVYRAILSGASHEELLQIADFYDYLEIQPCGNNQYLL 470

Query: 191  GYDRY-----------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              DRY              +++ L       +VAT +  FL+ ED  A  +L A      
Sbjct: 471  RDDRYPEINTWEDLQTINKKILALGDELGKLVVATCDVHFLNPEDAIARRILQA---GMG 527

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPR--F 295
               +++P +    YL+   EM+  FS L +  A E  VE   + + +++   P+  R   
Sbjct: 528  YPDEEQPPL----YLRTTEEMLEEFSYLGKERAYEVVVENTNKINDMIEKFKPVPDRDQL 583

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                    +++ E+    +A      +L           +    RL  EL+ I    FS 
Sbjct: 584  YSPMIPGAKEKVESMSYGRAHEWYGPKL----------PKIVEDRLKLELSSIIGNGFSV 633

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------- 399
             + I    ++ +  +   VG  RGS   S  A  L IT+++PL                 
Sbjct: 634  LYYIAHLLVKKSNDDGYMVG-SRGSVGSSFVATMLNITEVNPLPPHYRCPHCYHTEWFTD 692

Query: 400  -------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                      ++ F  FL      +PD D++F  + +    +Y 
Sbjct: 693  GSVGSGFDLADKACPECGTMMVKDGHNIPFAVFLGFHGDKVPDIDLNFSGEYQPRAHKYT 752

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            ++ +G + V +  T G++  K A   + +  +              N+P     ++    
Sbjct: 753  EDLFGRDNVFRAGTLGTIADKTAYGYIKKYYENR------------NEPKRTAFIEG--- 797

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDVRS- 551
                               +  KL G+ R    H AGI++  R L    L P+       
Sbjct: 798  -------------------LIPKLVGVKRTTGQHPAGIMVVPRDLDVHYLTPVSYPADDP 838

Query: 552  --DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
                  T ++   I    ++K D LG    T+++   + L +         IP  D +T 
Sbjct: 839  TCGTITTHYDYHSIND-RIVKLDILGHDDPTMIRMLDNMLGEGYC----KNIPVGDPDTM 893

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDC-IEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
             L  +  ++G+   +   M        P+C    +  ++S  +P    +++  +   +G 
Sbjct: 894  ELFLSTKSIGVSPEDI--MTDVATYGVPECGTRFVRQMISDVKPKNFSDLLRISGYSHGT 951

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEM 725
            +  ++    +      T+  I  ++ +M       +    +    +  R+    K   + 
Sbjct: 952  DVWLNNAQDLIKNGTPTEDTISTRDDIMNWLINKGMEPSMAFGIMEWARKGKAHKQGFKA 1011

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++++             K      +    K   Y F K+HA AY + +Y+ A+ K H+P 
Sbjct: 1012 EQEEA----------FKKANIPEFYIKSCKTLQYLFPKAHAVAYVLSAYRIAYCKVHHPK 1061

Query: 786  EFLAASMTLEMDNVE------------------------------KIKKFCQ---DARQF 812
            EF +A  T+     +                              +   + +   +    
Sbjct: 1062 EFYSAYFTIRAPKFDFVEVHKGINFMRSFIKNVGQQGTKASVNDKETATYMELAVEMLAR 1121

Query: 813  NIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              +     +       F V D  +   L AI G+G   A +I++A +  PF S ED  +R
Sbjct: 1122 GFEFEDVDLYRSDAHQFIVTDKGLLPPLGAIGGIGGVAAENIVKARSKGPFISREDLRNR 1181

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K++   +E L   G L+  
Sbjct: 1182 A---KISNTAVEVLADLGVLEGL 1201


>gi|152976184|ref|YP_001375701.1| DNA polymerase III PolC [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152024936|gb|ABS22706.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 1433

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 178/934 (19%), Positives = 324/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++ EG + L +L+S  ++ +   
Sbjct: 578  LKEVIEKGFEYHDQLNDSMGQGDSYKRGRPSHVTLLATSDEGLKNLYKLISYSHV-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  RI  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRIPRSLLKK-HREGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              + + L R  G  +   S +V+L  T + P+VAT N  +L+ ED     +L++      
Sbjct: 696  HLVELELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLNPEDAIYRKILISSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  Y +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVYFRTTDEMLDCFSFLGEEKAKEIVVTNTQKIASLIGEVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLIDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKNCPNCNVPYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V                            +  A D 
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV----------------------------KGYASDH 1013

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                  + +  VDRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1014 NL---TIRNAEVDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSVGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSSPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE +++            +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEEE------------MRNNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+P+ F AA  T+  D+ +          I+   ++  Q  +   P       
Sbjct: 1274 RIAYFKVHFPLLFYAAYFTVRADDFDVDVMAKGSASIRAKIEEIAQKGLDASPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   DF +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDTLIPPFNAVSGLGTNAAISIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    KL++ ++E L   G L   
Sbjct: 1394 DFLSKEDLQQR---SKLSKTIIEYLDSQGCLGDL 1424



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ +       AIAITD     S  E       AGI+ I 
Sbjct: 332 VELHLHTPMSQMDAVTSVSQLIAQAGKWGHEAIAITDHAVAQSFPEAYSAGKKAGIKVIY 391

Query: 72  GC 73
           G 
Sbjct: 392 GV 393


>gi|295706248|ref|YP_003599323.1| DNA polymerase III subunit alpha [Bacillus megaterium DSM 319]
 gi|294803907|gb|ADF40973.1| DNA polymerase III, alpha subunit [Bacillus megaterium DSM 319]
          Length = 1436

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 175/931 (18%), Positives = 320/931 (34%), Gaps = 187/931 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++     ++ +  + N  M               LL     G + L +LVS  +L +   
Sbjct: 581  LKDAFEREITMHDRLNDYMGEGNAYQRARPYHATLLAQNDVGLKNLFKLVSISHL-NYFY 639

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL---FGDRL- 182
            +  RI  S L +   EG+++ T    G +            E     +  +     D   
Sbjct: 640  RVPRIPRSQLDKY-REGILIGTACDRGEVFEGMMQKGIDEVEGAAEFYDYIEVQPPDNYK 698

Query: 183  -YVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              + L   R     ++  S +V+L      P+VAT N  +L+ ED     +L+       
Sbjct: 699  HLIELDLVRDEKALKDIISNIVKLGEKIGKPVVATGNVHYLNPEDKIYRKILIGSQGG-- 756

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIE 297
             +        PD + ++  EM++ FS L   +A E  V   ++ + ++    PI      
Sbjct: 757  -ANPLNRHQLPDVHFRSTDEMLNCFSFLDGDKAKEIVVHNTQKIADMIDDIKPIKDDLYT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      + E+R  + A       +         +    RL+ EL  I    F+  +
Sbjct: 816  PKIEGA----DEEMREMSYAMARSIYGEDL------PEVVEARLEKELKSIIGHGFAVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISHKLVKKSLNDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPKCKKSEFFNDGS 924

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKSCDDCGVPFIKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V                                   
Sbjct: 985  LFGEDNVYRAGTIGTVAEKTAYGYVKGYAGD----------------------------- 1015

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRS 551
              R+  L +  VDRL+       G+ R    H  GI++      +    P+     D  S
Sbjct: 1016 --RDLHLRNAEVDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADDRNS 1070

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY-- 609
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E    
Sbjct: 1071 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1124

Query: 610  ------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                         ++   GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1125 FSGTESLGVTEEQIMCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHGTDVWL 1184

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
                    N +E I +    +  ++     +++Y   + Q  +    + + E+    + +
Sbjct: 1185 G-------NAQELIRNDICNLSEVIGCRDDIMVY--LIYQGLEPSLAFKIMESVRKGKGL 1235

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              + +EEM            KNG+      +  ++      Y F K+HAAAY +++ + A
Sbjct: 1236 TPEFEEEM-----------IKNGVPDWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIA 1279

Query: 778  WMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVN------ 822
            + K H+ + + AA  T+  D+ +          I+   ++     +   P   N      
Sbjct: 1280 YFKVHHALLYYAAYFTVRADDFDIDTMIKGSTAIRAKMEEINAKGLDASPKEKNLLTVLE 1339

Query: 823  -------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
                               +   +F +    +     AI G+GT  A +I++A     F 
Sbjct: 1340 LSLEMCERGYSFKKVDLYESSADEFLIDGTSLVPPFNAIPGLGTNAALNIVKARETGEFL 1399

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            S ED   R    K+++ +LE L   G L+  
Sbjct: 1400 SKEDLQQR---GKVSKTILEYLDNHGCLESL 1427



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+  ++ +      PA+AITD     S  E        GI+ + 
Sbjct: 335 VELHLHTPMSQMDAVSSVGALVGQAKKWGHPAVAITDHAVAQSFPEAYGAGKKNGIKILY 394

Query: 72  GC 73
           G 
Sbjct: 395 GV 396


>gi|254519189|ref|ZP_05131245.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA]
 gi|226912938|gb|EEH98139.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA]
          Length = 1442

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 177/921 (19%), Positives = 329/921 (35%), Gaps = 165/921 (17%)

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I    ++     N +   +          I++   T  G + L +LVS  ++ D   +
Sbjct: 590  KMIEELNMNSLNDLNKEFLEKMDIKKEKTYHIIIFAKTQAGMKNLYKLVSEAHI-DNFHK 648

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL------LTFKKLFGDR 181
            S R+  S L E+  +GLI+ +   +G + RA     S    K +      L  + +  + 
Sbjct: 649  SPRVRKSKLMEM-RDGLIIGSACEAGEVYRAVLDGKSDEELKEIMGFYDYLEIQPIGNNE 707

Query: 182  LYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +N    +  D  R   +++  L      P+VAT +  FL  +D     ++MA    + 
Sbjct: 708  YLINKGNVKDEDELRSLNTKIYNLGKELNKPVVATGDVHFLDPQDEVFRKIIMAGQGFSD 767

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
                      P  YLK   EM+  FS L +  A E  +      +  + V  PI      
Sbjct: 768  SEN------QPPLYLKTTEEMLREFSYLGQDGAKEVVIINPGEIADSIDVLKPIPDETYP 821

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E+R   +  +       +I      +  ++RLD ELN I    ++  +
Sbjct: 822  PKIEGA----DDEIREMTMEKVH------SIYGDPLPEIVQKRLDKELNSIINNGYAVLY 871

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    +  +  +   VG  RGS   S  A    IT+++ L                   
Sbjct: 872  LIAQKLVAKSLADGYLVG-SRGSVGSSFVATMSNITEVNGLPPHYVCPNCKNSEFFLDGS 930

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL  +    PD D++F  D + E+ +Y + 
Sbjct: 931  VSSGADLEDKDCPKCGAKYIKDGHDIPFETFLGFEGDKEPDIDLNFSGDNQGEIHKYTEV 990

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G   V +  T G++  K A   V + L                               
Sbjct: 991  LFGKGYVFKAGTIGTVAEKTAYGYVRKYLDE----------------------------- 1021

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRS 551
              R  R +   ++RL   +    G+ R    H  GI++   D  +    P+ R   D  S
Sbjct: 1022 --RGLRASSAEIERL---TIGCTGIKRTTGQHPGGIMVVPSDNEIYNFTPIQRPADDPTS 1076

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            D+  T F+   I    L+K D LG    T+++   D        VD   IP +D +   L
Sbjct: 1077 DVTTTHFDYHSI-SGRLLKLDILGHDDPTMIRMLQDLTG-----VDPKTIPLNDKKVISL 1130

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
             T+   LG+ + E  G      G+     + +  ++   +P    ++V  +   +G +  
Sbjct: 1131 FTSPEALGVTKDEL-GCEVGSYGLPEFGTKFVRGMLVDTQPKSFADLVRISGLSHGTDVW 1189

Query: 672  VS-IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            ++     I       +  I  ++ +M +  + +G     A  +  ++ K          E
Sbjct: 1190 LNNAQYFIKEGYTTLKDCISTRDDIM-VYLMYAGVPPKMAFTIMESVRKGK-----GLTE 1243

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F     +N +      +      K   Y F K HA AY +++ + A+ K +YP  + A 
Sbjct: 1244 EFEKTMKENNVPDWYIESC-----KRIKYMFPKGHAVAYVMMAVRIAYFKVYYPEAYYAT 1298

Query: 791  SMTLEMDNVEK---------------------------------IKKFCQDARQFNIQIM 817
              T+  D+ +                                  + +   +     ++ +
Sbjct: 1299 YFTVRADDFDADLICKGPGAIKAKLDELYELGNKVTAKDKGLITVLELSYELYARGLKFL 1358

Query: 818  PPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
               +       F + ++ I   ++A++GVG   A+ I+EA  +  F S ED   R    K
Sbjct: 1359 KVDLYISEATRFTIEEDGIRPPISALQGVGDNAAKSIVEARKEGEFISKEDLRVR---SK 1415

Query: 877  LNRRVLESLVFAGALDCFGYS 897
            +++ V+E+L   G L+    +
Sbjct: 1416 VSKTVIETLSNHGCLEGMSET 1436



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++G +S   I+++ A     AIAITD   + +  +    A    I+ + 
Sbjct: 344 VELHCHTTMSAMDGVVSATKIIERAAKWGHKAIAITDHGVVQAFPDAQIAAKKNKIKVLY 403

Query: 72  GC 73
           G 
Sbjct: 404 GV 405


>gi|125973511|ref|YP_001037421.1| DNA polymerase III PolC [Clostridium thermocellum ATCC 27405]
 gi|125713736|gb|ABN52228.1| DNA polymerase III catalytic subunit, PolC type [Clostridium
            thermocellum ATCC 27405]
          Length = 1442

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 171/899 (19%), Positives = 317/899 (35%), Gaps = 179/899 (19%)

Query: 94   PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG 153
                  ++LV    G + L ++VS+ +L +   +  R+    L  +  EGLI+ +   +G
Sbjct: 615  ANSYHAIILVKNYVGLRNLYKIVSKTHL-EYFHKRPRLPRKLLM-MHREGLILGSACEAG 672

Query: 154  PIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAY 205
             + RA   N  +    R++ F      + L  +R  V   +    +  +    ++V L  
Sbjct: 673  ELYRAILENKDEDEISRIVKFYDYLEIQPLGNNRFLVESGKVNSEEDLKNINRKIVALGE 732

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
             +  P+VAT +  F+  +D     +LMA    +              Y +   EM+  F 
Sbjct: 733  KYNKPVVATCDVHFMDPQDEVFRRILMAGQGFSDADN------QAPLYFRTTDEMLEEFE 786

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
             L         + NT  IA  C  IL +     P  IE   ++I+   EN+ R       
Sbjct: 787  YLGREKCYEVVVTNTNLIADMCEDILPIPEGTFPPKIEGAEEEIRMLAENKARE------ 840

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                    I      +   +R++ ELN I +  FS  ++I    +  +  +   VG  RG
Sbjct: 841  --------IYGDPLPEIVEKRMEKELNSIIKNGFSVMYIIAQKLVWKSLSDGYLVG-SRG 891

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S  AY + IT+++ L                                         
Sbjct: 892  SVGSSFVAYLIGITEVNSLPPHYICENCKYSEFIEDGSYGCGFDMPEKECPRCGKILKKD 951

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
             + + FE FL  +    PD D++F  + +    +Y +  +G   V +  T G++  K A 
Sbjct: 952  GYDIPFETFLGFEGDKEPDIDLNFSGEYQPIAHKYTEELFGVGHVYRAGTIGTIAEKTAY 1011

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V   L                                 R     +  ++RL+   +  
Sbjct: 1012 GFVKNYLDE-------------------------------RGIVATNAEINRLV---KGC 1037

Query: 519  EGLYRHASTHAAGIVIG--DRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             G+ R    H  G++I   DR + +  P+     D  S    T F+   I    L+K D 
Sbjct: 1038 TGVKRTTGQHPGGVMIVPQDREIYEFCPIQYPADDPDSGTITTHFDYHSI-SGRLLKLDI 1096

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            LG    T+++   D             IP  +  T  + ++   LGI   + +       
Sbjct: 1097 LGHDDPTVIKMLEDLTGVNAR-----TIPIGEKRTMGIFSSTEPLGIRPEDIN-CPVGTF 1150

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQ 692
             +     + +  ++   +P     ++  +   +G +  ++    L+   +     VI  +
Sbjct: 1151 AIPEFGTKFVRQMLVDTKPKTFSELIRISGLSHGTDVWLNNAQDLVRNNIASLSEVICTR 1210

Query: 693  EQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            + +M            +    + +R+  G K +               +  + +    + 
Sbjct: 1211 DDIMLNLIHYGLPNKTAFKIMEDVRKGKGLKEE--------------YEQIMREKKVPDW 1256

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------- 800
            +    K   Y F K+HAAAY +++++ AW K +YP  F A   T+  D  +         
Sbjct: 1257 YIESCKKIKYMFPKAHAAAYVMMAFRIAWFKVYYPEAFYATYFTVRADEFDASMMCHGKE 1316

Query: 801  ----KIKKF--------------------CQDARQFNIQIMPPSVNTP-CVDFKVGDNRI 835
                KIK++                      +     I+ +P  +     V FK+  + +
Sbjct: 1317 KVKNKIKEYELKGNNMTQKEKNTLTILEVANEMYARGIKFLPIDIYKSDAVKFKIEKDGL 1376

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               L A++G+G + A  I +A     F S++D   R    K+++ V+E L   G LD  
Sbjct: 1377 RPPLNALQGLGVSAAHSIAQARNQGEFLSVDDLRIRA---KVSKTVIEILQQNGCLDGL 1432



 Score = 81.2 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++G  S+  ++ + A     AIA+TD   + +  E  + A    I+ I 
Sbjct: 344 VELHLHTQMSAMDGVTSVGELIKRAAQWGHKAIAVTDHGVVQAYPEACEAAKKNKIKVIY 403


>gi|258645985|ref|ZP_05733454.1| DNA polymerase III, alpha subunit [Dialister invisus DSM 15470]
 gi|260403356|gb|EEW96903.1| DNA polymerase III, alpha subunit [Dialister invisus DSM 15470]
          Length = 1227

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 180/1015 (17%), Positives = 339/1015 (33%), Gaps = 199/1015 (19%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + + ++P  V L +H+  S L+G +    I+   A  + PA+AITD   + +  +    A
Sbjct: 288  EDMAETPR-VELHLHTKMS-LDGLIDNEEIIRTAAKWKHPAVAITDHGVIQAFPQIQTLA 345

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G + I G +  +  +    +     +       I+LL     G + L  LV+  +L 
Sbjct: 346  AKYGQKVIYGMEGYLIDE----VPEDIDSDRQQYSHIILLAKNITGLRNLYRLVTLSHLK 401

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
               ++   +    L+E   +GL+  +    G   RA     S     RL  F      + 
Sbjct: 402  -YYRKRPLLPRPLLEEF-RDGLMYGSACVMGEFFRAVLNGDSDEELIRLAKFYDYLEVQP 459

Query: 183  YVNLQRHRGYD-----------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
              N +     D           +    +V+++     +P+ AT+++ +L  E     D+L
Sbjct: 460  LGNNEFLLYEDKYAAITTKKDLQELNKKVIEIGEKAGIPVCATSDAHYLFAEYARDRDIL 519

Query: 232  MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFIL 285
            ++        +  +    P  YL+   EM+  FS LP+       + NT  +A +C  I 
Sbjct: 520  LS-----NWEKPGKIESHPPVYLRTTEEMLEEFSYLPKEKAEEIVITNTRRVAEQCEVIE 574

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
             +         +    D      ++L+            +         +  R RLD EL
Sbjct: 575  PLAEEWKSYNPKIAGAD------DKLKAMCYEKAVELYGE------PLPEIIRDRLDLEL 622

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------ 399
              I    +   + I    ++ +      VG  RGS   S  A    IT+++PL       
Sbjct: 623  TPIINHGYGVLYYIAHKLVKHSNDRGYLVG-SRGSVGSSFVATLAGITEVNPLPPHYVCP 681

Query: 400  -----------------------------------FSLLFERFLNPDRMSMPDFDIDF-C 423
                                                ++ F  FL  D   +PD D++F  
Sbjct: 682  HCHWNQFFTDGSVGGGFDLADKKCPNCGTELNKDGHNIPFAVFLGFDGDKVPDIDLNFSS 741

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D +    +Y +  +G + V +  T   +Q K A   V R                    
Sbjct: 742  GDDQAVAHKYTEELFGRDNVFRAGTIAGIQDKTAFGFVKRY------------------- 782

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQ 541
                        +  R     D  +++L   S  + G+ R    H AGI++  R   +  
Sbjct: 783  ------------AENRGLTFNDIFIEKL---SAGVAGVKRTTGQHPAGIMVCPRDMDIHN 827

Query: 542  LVPMYRDVR------------SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
              P+                      T F+   I    ++K D LG     +++   D  
Sbjct: 828  FTPLQYAANKRWLKDETGEKIPGTITTHFDYHSI-SGRMLKLDILGHDDPKVIRMLQDIT 886

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE------SSGMRQALEGMQPDCIEDI 643
                  +D   IPF+D +T  L ++   LGI   +        G+     G+       +
Sbjct: 887  G-----IDPLHIPFNDEKTLSLFSSPDALGITSEQLKAAVGDKGITVGAIGLPEFGTPFV 941

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQL- 701
              ++   RP     +V  +   +G    + +   LI     + +  I  ++ +M      
Sbjct: 942  RGMLEDTRPKNFSELVRISGFSHGTNVWLNNARDLITSGKVKLEEAISTRDDIMNYLIEH 1001

Query: 702  ----LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
                L+ + + E     + + K                 ++  +        F       
Sbjct: 1002 HVKPLTAFKVMENVRKGKGLEKGN-------------SNNRKELEDARVPQWFIDSCLKI 1048

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN------------------- 798
             Y F ++HA AY +++++ AW K + P+ + AA  T+  +                    
Sbjct: 1049 SYLFPRAHAVAYVMMAFRIAWFKVYEPLAYYAAYFTIRAEGAFNAAVILRGLASQSAELA 1108

Query: 799  ----------VEK----IKKFCQDARQFNIQIMPPSVN-TPCVDFKVGDNRIYYSLAAIK 843
                      VEK    + +   +     ++ +P  +N +   +F + D  +      I 
Sbjct: 1109 RINSLPHPTAVEKGSATVIEAAAEMYLRGLKFLPIDLNKSSASEFLMEDGALRPPFNCIP 1168

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL-ESLVFAGALDCFGYS 897
             +G T A+ I+EA  + PF S ED   R    +     + E  +  G  +    +
Sbjct: 1169 ALGNTVAKEIVEARREHPFTSKEDLKKRGKVSQSIIDTMDEMGILHGMPEEEQIN 1223


>gi|323934241|gb|EGB30665.1| bacterial DNA polymerase III alpha [Escherichia coli E1520]
          Length = 787

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 217/760 (28%), Positives = 359/760 (47%), Gaps = 51/760 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L V + +SL E AL   N +         A+   D+ N+ S +   Q+A    +  I G 
Sbjct: 4   LMVRTDFSLGESALKAENAVKIAREAGYTAVISADSMNIASVIPL-QRAAGDDMAVICGV 62

Query: 74  Q----LDIDMQDNLKMTNQGKT-----PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +     D   +   K+  +              S   L+   +GY+ + EL++     +Q
Sbjct: 63  KLNIVDDPTYEHRAKLAKESMRCMESLERGRNYSFTALIKNEQGYRDICELMTVANTREQ 122

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                R+ L  L     +G I+L     G + +    N        L+T      D  Y 
Sbjct: 123 FYFVPRLSLEQLVSTYAKGNIILLTSDIGSVFQ---RNDFAKIISTLIT--AGGKDNFYS 177

Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +  H   +      + +++A   ++  VA   + + S +D +  D+   V ++  + Q 
Sbjct: 178 VVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYESIDDADIKDIAHMVTNNIKIDQP 237

Query: 244 DRPRVTPDHY-----LKNRSEMVSIFS---DLP--EALENTVE--IARRCSFILQVHAPI 291
            R R+           ++  E +  FS   D+P   A+ +T +  I   C++      P 
Sbjct: 238 HRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIDACTWRWHELPPA 297

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVI 348
           LP+  + E           L   AVAGL  RL     G        + Y +RL +E++ +
Sbjct: 298 LPKMADDEPAT--------LMKLAVAGLRKRLTTKEFGYTPPASENRVYVERLKYEMDTL 349

Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
            R+ F GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFERF+
Sbjct: 350 TRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFI 409

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
           NP+R+ +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R   + 
Sbjct: 410 NPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIYGVE 469

Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            + +  + K + N     + L+ + +  +                 + KL+ L R    H
Sbjct: 470 SADM-AVSKELKNVEDDSLPLEELRE--QLASLDKYATKYPDAFNAACKLQSLMRGFGRH 526

Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
           AAG+++   PL++  P+ R  R D     F+ ++ E  GLIK D LGL TL LL  +  +
Sbjct: 527 AAGMIVAGVPLTERTPVER--RGDARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRY 584

Query: 589 LAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ----PDCIEDI 643
           + +     ++L  I  +D +         T G+FQLES  MR+ L+ +     P   + +
Sbjct: 585 IKENTGEDINLDAISLEDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTV 644

Query: 644 IALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
           +A  +L+RPGPI + +   Y +   G     S+HP++D + ++T GV+IYQEQ+M   ++
Sbjct: 645 VATTALFRPGPIQSGMLDDYVSVAKGFMAPHSLHPMLDDISRDTNGVLIYQEQIMAATRI 704

Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
           L+G+S++EAD +R+A+GKK  E+M      FI  A +  +
Sbjct: 705 LAGFSMAEADSVRKAIGKKDMEKMKSIGGDFIKRAEEGWV 744


>gi|321315425|ref|YP_004207712.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
 gi|320021699|gb|ADV96685.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
          Length = 1437

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 175/932 (18%), Positives = 330/932 (35%), Gaps = 173/932 (18%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 578  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 629

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 630  LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 687

Query: 175  K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                    +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 688  DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 747

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFIL 285
              +L++       +        P  + +   EM+  FS L E  A E  V   ++ + ++
Sbjct: 748  RKILISSQGG---ANPLNRHELPKVHFRTTDEMLEAFSFLGEKKAKEIVVTNTQKVASLV 804

Query: 286  QVHAPILPRFIEKECDDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                PI       + +   +E  E +  R +++ G E+             +    R++ 
Sbjct: 805  DDIKPIKDDLYTPKIEGADEEIREMSYQRARSIYGEEL------------PEIVEARIEK 852

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            EL  I    F+  +LI    ++ +  +   VG  RGS   S+ A    IT+++PL     
Sbjct: 853  ELKSIIGHGFAVIYLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLPPHYV 911

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                   + FE FL      +PD D++F
Sbjct: 912  CPECQHSEFFNDGSVGSGFDLPDKTCPHCGTPLKKDGHDIPFETFLGFKGDKVPDIDLNF 971

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              + + +   Y +  +G + V +  T G++  K A   V                     
Sbjct: 972  SGEYQPQAHNYTKVLFGEDNVYRAGTIGTVAEKTAYGYVKGYAGDN-------------- 1017

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLS 540
                                +    +DRL+   Q   G+ R    H  GI++      + 
Sbjct: 1018 -----------------NLHMRGAEIDRLV---QGCTGVKRTTGQHPGGIIVVPDYMDIY 1057

Query: 541  QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+        S+   T F+   I    L+K D LG    T+++   D        +D
Sbjct: 1058 DFSPIQFPADATGSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGID 1111

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               IP DD E   +     +LG+ + E  G +    G+       +  ++   +P     
Sbjct: 1112 PKTIPTDDPEVMKIFQGTESLGVTE-EQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSE 1170

Query: 658  IVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V  +   +G +  + +   LI   + E   VI  ++ +M +  +  G   S A  +   
Sbjct: 1171 LVQISGLSHGTDVWLGNAQELIHNNICELSEVIGCRDDIM-VYLIYQGLEPSLAFKIMEF 1229

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + K      + ++E          +      + +    K   Y F K+HAAAY +++ + 
Sbjct: 1230 VRKGKGLTPEWEEE----------MKNNNVPDWYIDSCKKIKYMFPKAHAAAYVLMAVRI 1279

Query: 777  AWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVN----- 822
            A+ K H+ + + AA  T+  D+ +          I+   +D     +   P   N     
Sbjct: 1280 AYFKVHHALLYYAAYFTVRADDFDIDTMIKGSTAIRAVMEDINAKGLDASPKEKNLLTVL 1339

Query: 823  --------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
                                +   +F +  N +     +I G+GT  A +I++A  +  F
Sbjct: 1340 ELALEMCERGYSFQKVDLYRSSATEFIIDGNSLIPPFNSIPGLGTNAALNIVKAREEGEF 1399

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             S ED   R    K+++ +LE L   G L+  
Sbjct: 1400 LSKEDLQKR---GKVSKTILEYLDRHGCLESL 1428



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/379 (13%), Positives = 118/379 (31%), Gaps = 52/379 (13%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++    +  ++++       AIA+TD   + S  +    A   GI+ I 
Sbjct: 335 VELHLHSPMSQMDAVTGIGKLVEQAKKWGHEAIALTDHAVVQSFPDAYSAAKKHGIKMIY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G + ++         N           +V  V T  G   + + +  +  +      +  
Sbjct: 395 GMEANLVDDGVPIAYNAAHRLLEEETYVVFDVET-TGLSAVYDTIIELAAVKVKGGEIID 453

Query: 132 CLSWLQEIGTEG---LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL------ 182
                          +I LTG     I      ++  V +  +  F++  GD +      
Sbjct: 454 KFEAFANPHRPLSATIIELTG-----ITDDMLQDAPDVVD-VIRDFREWIGDDILVAHNA 507

Query: 183 -----YVNLQRHRGYD--------------------RYRESQVVQLAYTHELPLVATNNS 217
                ++N+   +  +                     ++  ++  L    ++ L   + +
Sbjct: 508 SFDMGFLNVAYKKLLEVDKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQHHRA 567

Query: 218 LF-LSEEDYEAHDVLMAVAHS--TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
           ++      Y    +L   A        + +      + Y ++R    ++ +     L+N 
Sbjct: 568 IYDTEATAYLLLKMLKDAAEKGIQYHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNL 627

Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA----- 329
            ++            P +PR   ++  +         R +   G+  +  +         
Sbjct: 628 FKLVSLSHIHYFYRVPRIPRSQLEKYREGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 687

Query: 330 ---KGYHAQDYRQRLDFEL 345
              +    + YR  L+ EL
Sbjct: 688 DYLEVQPPEVYRHLLELEL 706


>gi|309797648|ref|ZP_07692035.1| DNA polymerase III, alpha subunit [Escherichia coli MS 145-7]
 gi|308118745|gb|EFO56007.1| DNA polymerase III, alpha subunit [Escherichia coli MS 145-7]
          Length = 787

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 217/760 (28%), Positives = 359/760 (47%), Gaps = 51/760 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L V + +SL E AL   N +         A+   D+ N+ S +   Q+A    +  I G 
Sbjct: 4   LMVRTDFSLGESALKAENAVKIAREAGYTAVISADSMNIASVIPL-QRAAGDDMAVICGV 62

Query: 74  Q----LDIDMQDNLKMTNQGKT-----PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +     D   +   K+  +              S   L+   +GY+ + EL++     +Q
Sbjct: 63  KLNIVDDPTYEHRAKLAKESMRCMESLERGRNYSFTALIKNEQGYRDICELMTVANTREQ 122

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                R+ L  L     +G I+L     G + +    N        L+T      D  Y 
Sbjct: 123 FYFVPRLSLEQLVSTYAKGNIILLTSDIGSVFQ---RNDFAKIISTLIT--AGGKDNFYS 177

Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +  H   +      + +++A   ++  VA   + + S +D +  D+   V ++  + Q 
Sbjct: 178 VVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYESIDDADIKDIAHMVTNNIKIDQP 237

Query: 244 DRPRVTPDHY-----LKNRSEMVSIFS---DLP--EALENTVE--IARRCSFILQVHAPI 291
            R R+           ++  E +  FS   D+P   A+ +T +  I   C++      P 
Sbjct: 238 HRLRIPHQRDNAINGRRHLLEALKAFSVRMDVPVTAAMASTTQDSIIDACTWRWHELPPA 297

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVI 348
           LP+  + E           L   AVAGL  RL     G        + Y +RL +E++ +
Sbjct: 298 LPKMADDEPAT--------LMKLAVAGLRKRLTTKEFGYTPPASENRVYVERLKYEMDTL 349

Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
            R+ F GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFERF+
Sbjct: 350 TRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFI 409

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
           NP+R+ +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R   + 
Sbjct: 410 NPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIYGVE 469

Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            + +  + K + N     + L+ + +  +                 + KL+ L R    H
Sbjct: 470 SADM-AVSKELKNVEDDSLPLEELRE--QLASLDKYATKYPDAFNAACKLQSLMRGFGRH 526

Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
           AAG+++   PL++  P+ R  R D     F+ ++ E  GLIK D LGL TL LL  +  +
Sbjct: 527 AAGMIVAGVPLTERTPVER--RGDARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRY 584

Query: 589 LAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ----PDCIEDI 643
           + +     ++L  I  +D +         T G+FQLES  MR+ L+ +     P   + +
Sbjct: 585 IKENTGEDINLDAISLEDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTV 644

Query: 644 IALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
           +A  +L+RPGPI + +   Y +   G     S+HP++D + ++T GV+IYQEQ+M   ++
Sbjct: 645 VATTALFRPGPIQSGMLDDYVSVAKGFMAPHSLHPMLDDISRDTNGVLIYQEQIMAATRI 704

Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
           L+G+S++EAD +R+A+GKK  E+M      FI  A +  +
Sbjct: 705 LAGFSMAEADSVRKAIGKKDMEKMKSIGGDFIKRAEEGWV 744


>gi|291484213|dbj|BAI85288.1| DNA polymerase III PolC [Bacillus subtilis subsp. natto BEST195]
          Length = 1437

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 175/932 (18%), Positives = 330/932 (35%), Gaps = 173/932 (18%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 578  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 629

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 630  LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 687

Query: 175  K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                    +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 688  DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 747

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFIL 285
              +L++       +        P  + +   EM+  FS L E  A E  V   ++ + ++
Sbjct: 748  RKILISSQGG---ANPLNRHELPKVHFRTTDEMLEAFSFLGEEKAKEIVVTNTQKVASLV 804

Query: 286  QVHAPILPRFIEKECDDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                PI       + +   +E  E +  R +++ G E+             +    R++ 
Sbjct: 805  DDIKPIKDDLYTPKIEGADEEIREMSYQRARSIYGEEL------------PEIVEARIEK 852

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            EL  I    F+  +LI    ++ +  +   VG  RGS   S+ A    IT+++PL     
Sbjct: 853  ELKSIIGHGFAVIYLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLPPHYV 911

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                   + FE FL      +PD D++F
Sbjct: 912  CPECQHSEFFNDGSVGSGFDLPDKTCPHCGTPLKKEGHDIPFETFLGFKGDKVPDIDLNF 971

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              + + +   Y +  +G + V +  T G++  K A   V                     
Sbjct: 972  SGEYQPQAHNYTKVLFGEDNVYRAGTIGTVAEKTAYGYVKGYAGDN-------------- 1017

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLS 540
                                +    +DRL+   Q   G+ R    H  GI++      + 
Sbjct: 1018 -----------------NLHMRGAEIDRLV---QGCTGVKRTTGQHPGGIIVVPDYMDIY 1057

Query: 541  QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+        S+   T F+   I    L+K D LG    T+++   D        +D
Sbjct: 1058 DFSPIQFPADATGSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGID 1111

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               IP DD E   +     +LG+ + E  G +    G+       +  ++   +P     
Sbjct: 1112 PKTIPTDDPEVMKIFQGTESLGVTE-EQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSE 1170

Query: 658  IVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V  +   +G +  + +   LI   + E   VI  ++ +M +  +  G   S A  +   
Sbjct: 1171 LVQISGLSHGTDVWLGNAQELIHNNICELSEVIGCRDDIM-VYLIYQGLEPSLAFKIMEF 1229

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + K      + ++E          +      + +    K   Y F K+HAAAY +++ + 
Sbjct: 1230 VRKGKGLTPEWEEE----------MKNNNVPDWYIDSCKKIKYMFPKAHAAAYVLMAVRI 1279

Query: 777  AWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVN----- 822
            A+ K H+ + + AA  T+  D+ +          I+   +D     +   P   N     
Sbjct: 1280 AYFKVHHALLYYAAYFTVRADDFDIDTMIKGSTAIRAVMEDINAKGLDASPKEKNLLTVL 1339

Query: 823  --------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
                                +   +F +  N +     +I G+GT  A +I++A  +  F
Sbjct: 1340 ELALEMCERGYSFQKVDLYRSSATEFIIDGNSLIPPFNSIPGLGTNAALNIVKAREEGEF 1399

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             S ED   R    K+++ +LE L   G L+  
Sbjct: 1400 LSKEDLQKR---GKVSKTILEYLDRHGCLESL 1428



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/379 (13%), Positives = 118/379 (31%), Gaps = 52/379 (13%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++    +  ++++       AIA+TD   + S  +    A   GI+ I 
Sbjct: 335 VELHLHSPMSQMDAVTGIGKLVEQAKKWGHEAIALTDHAVVQSFPDAYSAAKKHGIKMIY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G + ++         N           +V  V T  G   + + +  +  +      +  
Sbjct: 395 GMEANLVDDGVPIAYNAAHRLLEEETYVVFDVET-TGLSAVYDTIIELAAVKVKGGEIID 453

Query: 132 CLSWLQEIGTEG---LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL------ 182
                          +I LTG     I      ++  V +  +  F++  GD +      
Sbjct: 454 KFEAFANPHRPLSATIIELTG-----ITDDMLQDAPDVVD-VIRDFREWIGDDILVAHNA 507

Query: 183 -----YVNLQRHRGYD--------------------RYRESQVVQLAYTHELPLVATNNS 217
                ++N+   +  +                     ++  ++  L    ++ L   + +
Sbjct: 508 SFDMGFLNVAYKKLLEVDKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQHHRA 567

Query: 218 LF-LSEEDYEAHDVLMAVAHS--TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
           ++      Y    +L   A        + +      + Y ++R    ++ +     L+N 
Sbjct: 568 IYDTEATAYLLLKMLKDAAEKGIQYHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNL 627

Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA----- 329
            ++            P +PR   ++  +         R +   G+  +  +         
Sbjct: 628 FKLVSLSHIHYFYRVPRIPRSQLEKYREGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 687

Query: 330 ---KGYHAQDYRQRLDFEL 345
              +    + YR  L+ EL
Sbjct: 688 DYLEVQPPEVYRHLLELEL 706


>gi|326204061|ref|ZP_08193922.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
            2782]
 gi|325985828|gb|EGD46663.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
            2782]
          Length = 1433

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 191/931 (20%), Positives = 335/931 (35%), Gaps = 205/931 (22%)

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G + I   Q   D + NLK          +    ++LV    G + L ++VS+ +L 
Sbjct: 585  KEKGCKTIKDIQNAFDGEINLK---------ASSYHAIILVKNKVGLKNLYKIVSQSHLK 635

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KK 176
                +  R+    L E   EGLI+ +   +G + RA   N S+    +++ F      + 
Sbjct: 636  -YFYKKPRVPKKLLMEY-REGLILGSACEAGELYRAILNNKSEEEISKIVRFYDYLEIQP 693

Query: 177  LFGDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            L  ++  +N  +    +  +    ++++L   H   +VAT +  F+   D     +LMA 
Sbjct: 694  LGNNQFLINNGKVSSQEELKKINKKIIRLGERHRKLVVATCDVHFMDPRDEVFRRILMAG 753

Query: 235  AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVH 288
               T              YL+   EM+  FS L E       +ENT  IA     I  V 
Sbjct: 754  RGFTDADN------QAPLYLRTTDEMLEEFSYLGEEKAREVVIENTNLIADMIESIAPVL 807

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                P  IE    DI  E     R K + G                +   QRL+ ELN I
Sbjct: 808  EGTYPPNIEGAEQDI--ENMAMTRAKEIYG------------EDLPEVVAQRLEKELNSI 853

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
             +  F+  +LI    +  +  +   VG  RGS   S  A    IT+++ L+         
Sbjct: 854  IKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVGSSFVANMSGITEVNSLQPHYVCEKCK 912

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                            + + FE FL  D    PD D++F  D +
Sbjct: 913  YSEFVLDGTYDCGFDMPEKECPNCGNKLKKDGYDIPFETFLGFDGDKEPDIDLNFSGDYQ 972

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                +Y +  +G   V +  T  S+  K A   V   L                      
Sbjct: 973  PVAHKYTEELFGEGYVFRAGTIASVAEKTAYGYVKNYLDE-------------------- 1012

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPM 545
                       RE  + +  ++RL+   +   G+ R    H  GI+I  +   +    P+
Sbjct: 1013 -----------REIIVTNSEINRLV---KGCTGIKRTTGQHPGGIMIVPKDKEIFDFSPI 1058

Query: 546  YR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
             R   D +S++  T F+  ++    ++K D LG    T+++   D        VD + IP
Sbjct: 1059 QRPADDTQSEIITTHFDYHFLH-GSILKLDILGHDDPTVIRMLEDLTG-----VDATTIP 1112

Query: 603  FDDHETYHLLTTKGTLG--------------IFQLESSGMRQALEGMQPDCIEDIIALVS 648
              + +T  L  +   LG              I +  +  +RQ L   +P    ++I +  
Sbjct: 1113 IGEEKTMSLFNSTEALGVKPEDIGSETGTFAIPEFGTKFVRQMLMDTKPRSFSELIRISG 1172

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            L       ++ + N ++  +  I ++   I             ++ +M I  + +G    
Sbjct: 1173 LSHGT---DVWLNNAQELIRNGITTLSQSI-----------CCRDDIM-IYLMHAGLPPK 1217

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             A         KI E  D +K + +    +  + +    + +    K   Y F K+HAAA
Sbjct: 1218 TA--------FKIME--DVRKGKGVKDEYEVVMKENKVPDWYIQSCKKIKYMFPKAHAAA 1267

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIKKF---------- 805
            Y +++++ AW K +YP  F     T+  D+ +             KIK+F          
Sbjct: 1268 YVMMAFRIAWFKVYYPEAFYTTYFTVRADDFDAEMMAHGQDKVRNKIKEFEMKGNNITTK 1327

Query: 806  ----------CQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
                        +     I  +P  +       F++ D  I   L A++G+G   A++I+
Sbjct: 1328 EKNVLTILEVVNEMYARGINFLPIHLYLSEATKFRIEDKGIRPPLNALQGLGGAAAQNIV 1387

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            EA  +  F S+++  ++    K    +LE  
Sbjct: 1388 EARKNGEFLSIDELRTKAKISKSVIEILERN 1418



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++G   +  ++ + A     AIAITD   + +  +    +    I+ I 
Sbjct: 337 VELHLHTQMSSMDGVTPVKELVKRAAQWGHKAIAITDHGIVQAYPDAYAASKKNNIKVIY 396

Query: 72  GCQLD 76
           G +  
Sbjct: 397 GLECY 401


>gi|16078721|ref|NP_389540.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309536|ref|ZP_03591383.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313860|ref|ZP_03595665.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. NCIB
            3610]
 gi|221318783|ref|ZP_03600077.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
            JH642]
 gi|221323055|ref|ZP_03604349.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. SMY]
 gi|118793|sp|P13267|DPO3_BACSU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|40060|emb|CAA36362.1| unnamed protein product [Bacillus subtilis]
 gi|2634030|emb|CAB13531.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp. subtilis
            str. 168]
          Length = 1437

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 175/932 (18%), Positives = 330/932 (35%), Gaps = 173/932 (18%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 578  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 629

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 630  LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 687

Query: 175  K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                    +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 688  DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 747

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFIL 285
              +L++       +        P  + +   EM+  FS L E  A E  V   ++ + ++
Sbjct: 748  RKILISSQGG---ANPLNRHELPKVHFRTTDEMLEAFSFLGEEKAKEIVVTNTQKVASLV 804

Query: 286  QVHAPILPRFIEKECDDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                PI       + +   +E  E +  R +++ G E+             +    R++ 
Sbjct: 805  DDIKPIKDDLYTPKIEGADEEIREMSYQRARSIYGEEL------------PEIVEARIEK 852

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            EL  I    F+  +LI    ++ +  +   VG  RGS   S+ A    IT+++PL     
Sbjct: 853  ELKSIIGHGFAVIYLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLPPHYV 911

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                   + FE FL      +PD D++F
Sbjct: 912  CPECQHSEFFNDGSVGSGFDLPDKTCPHCGTPLKKDGHDIPFETFLGFKGDKVPDIDLNF 971

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              + + +   Y +  +G + V +  T G++  K A   V                     
Sbjct: 972  SGEYQPQAHNYTKVLFGEDNVYRAGTIGTVAEKTAYGYVKGYAGDN-------------- 1017

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLS 540
                                +    +DRL+   Q   G+ R    H  GI++      + 
Sbjct: 1018 -----------------NLHMRGAEIDRLV---QGCTGVKRTTGQHPGGIIVVPDYMDIY 1057

Query: 541  QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+        S+   T F+   I    L+K D LG    T+++   D        +D
Sbjct: 1058 DFSPIQFPADATGSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGID 1111

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               IP DD E   +     +LG+ + E  G +    G+       +  ++   +P     
Sbjct: 1112 PKTIPTDDPEVMKIFQGTESLGVTE-EQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSE 1170

Query: 658  IVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V  +   +G +  + +   LI   + E   VI  ++ +M +  +  G   S A  +   
Sbjct: 1171 LVQISGLSHGTDVWLGNAQELIHNNICELSEVIGCRDDIM-VYLIYQGLEPSLAFKIMEF 1229

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + K      + ++E          +      + +    K   Y F K+HAAAY +++ + 
Sbjct: 1230 VRKGKGLTPEWEEE----------MKNNNVPDWYIDSCKKIKYMFPKAHAAAYVLMAVRI 1279

Query: 777  AWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVN----- 822
            A+ K H+ + + AA  T+  D+ +          I+   +D     +   P   N     
Sbjct: 1280 AYFKVHHALLYYAAYFTVRADDFDIDTMIKGSTAIRAVMEDINAKGLDASPKEKNLLTVL 1339

Query: 823  --------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
                                +   +F +  N +     +I G+GT  A +I++A  +  F
Sbjct: 1340 ELALEMCERGYSFQKVDLYRSSATEFIIDGNSLIPPFNSIPGLGTNAALNIVKAREEGEF 1399

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             S ED   R    K+++ +LE L   G L+  
Sbjct: 1400 LSKEDLQKR---GKVSKTILEYLDRHGCLESL 1428



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/379 (13%), Positives = 118/379 (31%), Gaps = 52/379 (13%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++    +  ++++       AIA+TD   + S  +    A   GI+ I 
Sbjct: 335 VELHLHSPMSQMDAVTGIGKLVEQAKKWGHEAIALTDHAVVQSFPDAYSAAKKHGIKMIY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G + ++         N           +V  V T  G   + + +  +  +      +  
Sbjct: 395 GMEANLVDDGVPIAYNAAHRLLEEETYVVFDVET-TGLSAVYDTIIELAAVKVKGGEIID 453

Query: 132 CLSWLQEIGTEG---LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL------ 182
                          +I LTG     I      ++  V +  +  F++  GD +      
Sbjct: 454 KFEAFANPHRPLSATIIELTG-----ITDDMLQDAPDVVD-VIRDFREWIGDDILVAHNA 507

Query: 183 -----YVNLQRHRGYD--------------------RYRESQVVQLAYTHELPLVATNNS 217
                ++N+   +  +                     ++  ++  L    ++ L   + +
Sbjct: 508 SFDMGFLNVAYKKLLEVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQHHRA 567

Query: 218 LF-LSEEDYEAHDVLMAVAHS--TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
           ++      Y    +L   A        + +      + Y ++R    ++ +     L+N 
Sbjct: 568 IYDTEATAYLLLKMLKDAAEKGIQYHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNL 627

Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA----- 329
            ++            P +PR   ++  +         R +   G+  +  +         
Sbjct: 628 FKLVSLSHIHYFYRVPRIPRSQLEKYREGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 687

Query: 330 ---KGYHAQDYRQRLDFEL 345
              +    + YR  L+ EL
Sbjct: 688 DYLEVQPPEVYRHLLELEL 706


>gi|212639526|ref|YP_002316046.1| DNA polymerase III PolC [Anoxybacillus flavithermus WK1]
 gi|212561006|gb|ACJ34061.1| DNA polymerase III, alpha subunit (gram-positive type) [Anoxybacillus
            flavithermus WK1]
          Length = 1430

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 175/952 (18%), Positives = 323/952 (33%), Gaps = 196/952 (20%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             +   ++    GIQ +           N     QG           LLV    G + L +
Sbjct: 571  LIHLLKELDEKGIQYMDQL--------NEASKEQGAFQRSRPFHATLLVQNEVGLKNLFK 622

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++ +   +  RI  S LQ+   EG+++ +G   G +  A      + AE     +
Sbjct: 623  LVSFSHV-NYFYRVPRIPRSVLQQ-HREGILVGSGCDKGELFEAMMQKGVEEAEAIASFY 680

Query: 175  K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               ++    +Y     +   R     +   + +VQL     +P+VAT N  ++++ED   
Sbjct: 681  DFLEVHPPEVYAPLIEMEYVRDEAALKEIITNIVQLGDRLGIPVVATGNVHYINQEDKIY 740

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFIL 285
              +L+                 P+ + +  +EM+  FS L E  A E  V   ++ + ++
Sbjct: 741  RKILIHSQSG---GNPLNRHELPNVHFRTTNEMLESFSFLGEQKAKEIVVTNTKKIADLI 797

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                PI       + +      + E+R  +    +      +I          +RL+ EL
Sbjct: 798  GEVKPIKDELYTPKIEGA----DEEIRRMSYERAK------SIYGDPLPDIVEKRLEKEL 847

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------ 399
              I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL       
Sbjct: 848  KSIIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCP 906

Query: 400  -----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQ 424
                                                 + FE FL      +PD D++F  
Sbjct: 907  NCKHSEFFDDGSVGSGFDLPDKDCPKCGARYNKDGHDIPFETFLGFKGDKVPDIDLNFSG 966

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + +     Y +  +G + V +  T G++  K A   V   +                   
Sbjct: 967  EYQPRAHNYTKVLFGEDNVYRAGTIGTVADKTAYGFVKGYIND----------------- 1009

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQL 542
                          +   +    +DRL   +    G+ R    H  GI++      +   
Sbjct: 1010 --------------KNLHVRAAEIDRL---AAGCTGVKRTTGQHPGGIIVVPDYMDIYDF 1052

Query: 543  VPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             P+     D  S+   T F+   I    L+K D LG    T+++   D        +D  
Sbjct: 1053 TPIQYPADDTESEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPK 1106

Query: 600  LIPFDDHETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             IP DD E                 ++   GTLGI +  +  +RQ LE  +P    +++ 
Sbjct: 1107 TIPTDDPEVMKIFSSTESLGVTPEQIMCNTGTLGIPEFGTRFVRQMLEETKPKTFSELVQ 1166

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +  L     +                 +   LI         VI  ++ +M +  +  G 
Sbjct: 1167 ISGLSHGTDVWLG--------------NAQELIQSGTCTLSEVIGCRDDIM-VYLIYRGL 1211

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
              S A  +  ++ K      + ++E          + K      +    K   Y F K+H
Sbjct: 1212 EPSLAFKIMESVRKGKGLTPEFEEE----------MRKHDVPEWYIESCKKIKYMFPKAH 1261

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQI 816
            AAAY +++ + A+ K H+P+ + A+  T+  ++ +          I++  ++ +   +  
Sbjct: 1262 AAAYVLMAVRIAYFKVHHPLLYYASYFTVRAEDFDLDVMIQGSAAIRRRIEEIQAKGLDA 1321

Query: 817  MPPSVN-------------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
                 N                         +   +F +  + +     AI G+G   A+
Sbjct: 1322 SAKEKNLLTVLEIALEMCERGFSFKHIDLYRSQATEFIIDGHSLIPPFNAIPGLGENVAK 1381

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL 902
             I+ A  +  F S ED   R    K     LES    G L     ++++ L 
Sbjct: 1382 SIVRAREEGEFLSKEDLQQRGKVSKTILEYLES---RGCLQSLPDHNQLSLF 1430



 Score = 75.8 bits (185), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH+  S ++   S+  ++++       AIA+TD   + S  E        G++ + 
Sbjct: 329 VELHVHTQMSQMDAVASITKLVEQAKKWGHEAIAVTDHAVVQSFPEAYSAGKKYGVKILY 388

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 389 GLEANIVDDGVPIAYNEAHRRLMDDTFVVFDVET 422


>gi|294500902|ref|YP_003564602.1| DNA polymerase III subunit alpha [Bacillus megaterium QM B1551]
 gi|294350839|gb|ADE71168.1| DNA polymerase III, alpha subunit [Bacillus megaterium QM B1551]
          Length = 1436

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 175/931 (18%), Positives = 320/931 (34%), Gaps = 187/931 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++     ++ +  + N  M               LL     G + L +LVS  +L +   
Sbjct: 581  LKDAFEREITMHDRLNDYMGEGNAYQRARPYHATLLAQNDVGLKNLFKLVSISHL-NYFY 639

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL---FGDRL- 182
            +  RI  S L +   EG+++ T    G +            E     +  +     D   
Sbjct: 640  RVPRIPRSQLDKY-REGILIGTACDRGEVFEGMMQKGIDEVEGAAEFYDYIEVQPPDNYK 698

Query: 183  -YVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              + L   R     ++  S +V+L      P+VAT N  +L+ ED     +L+       
Sbjct: 699  HLIELDLVRDEKALKDIISNIVKLGEKIGKPVVATGNVHYLNPEDKIYRKILIGSQGG-- 756

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIE 297
             +        PD + ++  EM++ FS L   +A E  V   ++ + ++    PI      
Sbjct: 757  -ANPLNRHQLPDVHFRSTDEMLNCFSFLDGDKAKEIVVHNTQKIADMIDDIKPIKDDLYT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      + E+R  + A       +         +    RL+ EL  I    F+  +
Sbjct: 816  PKIEGA----DEEMREMSYAMARSIYGEEL------PEVVEARLEKELKSIIGHGFAVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISHKLVKKSLNDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPKCKKSEFFNDGS 924

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKSCEDCGVPFIKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V                                   
Sbjct: 985  LFGQDNVYRAGTIGTVAEKTAYGYVKGYAGD----------------------------- 1015

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRS 551
              R+  L +  VDRL+       G+ R    H  GI++      +    P+     D  S
Sbjct: 1016 --RDLHLRNAEVDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADDRNS 1070

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY-- 609
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E    
Sbjct: 1071 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1124

Query: 610  ------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                         ++   GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1125 FSGTESLGVTEEQIMCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHGTDVWL 1184

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
                    N +E I +    +  ++     +++Y   + Q  +    + + E+    + +
Sbjct: 1185 G-------NAQELIRNDICNLSEVIGCRDDIMVY--LIYQGLEPSLAFKIMESVRKGKGL 1235

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              + +EEM            KNG+      +  ++      Y F K+HAAAY +++ + A
Sbjct: 1236 TPEFEEEM-----------IKNGVPDWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIA 1279

Query: 778  WMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVN------ 822
            + K H+ + + AA  T+  D+ +          I+   ++     +   P   N      
Sbjct: 1280 YFKVHHALLYYAAYFTVRADDFDIDTMIKGSTAIRAKMEEINAKGLDASPKEKNLLTVLE 1339

Query: 823  -------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
                               +   +F +    +     AI G+GT  A +I++A     F 
Sbjct: 1340 LSLEMCERGYSFKKVDLYKSSADEFLIDGTSLVPPFNAIPGLGTNAALNIVKARETGEFL 1399

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            S ED   R    K+++ +LE L   G L+  
Sbjct: 1400 SKEDLQQR---GKVSKTILEYLDNHGCLESL 1427



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+  ++ +      PA+AITD     S  E        GI+ + 
Sbjct: 335 VELHLHTPMSQMDAVSSVGALVGQAKKWGHPAVAITDHAVAQSFPEAYGAGKKNGIKILY 394

Query: 72  GC 73
           G 
Sbjct: 395 GV 396


>gi|229544431|ref|ZP_04433489.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
 gi|229324916|gb|EEN90593.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
          Length = 1442

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 188/944 (19%), Positives = 337/944 (35%), Gaps = 199/944 (21%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            L+  + A   GI            + N  M   G           LLV T EG + L +L
Sbjct: 584  LKMLKDARNRGI--------TYHDELNQYMGEGGAYKRARPSHCTLLVRTQEGLKNLFKL 635

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +S  ++ D   +  RI  S LQ+   EG+++ +G   G +            E+    + 
Sbjct: 636  ISLSHI-DYFYRVPRIPRSELQKY-REGILVGSGCDKGEVFEGMMQKDPAEVEEIARFYD 693

Query: 176  --KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    +Y       L R         +++V+L     LP+VAT N  +L+ ED    
Sbjct: 694  YLEVHPKEVYAPLIDQELIRDEKALEEIITKIVRLGEKLNLPVVATGNVHYLNPEDKIYR 753

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQ 286
             +L++         + R    PD + +   EM++ FS L E  A E  V+   + + +++
Sbjct: 754  KILISSQGGANPLNRHRL---PDVHFRTTDEMLACFSFLGEEKAKEIVVDNTNKIAGLIE 810

Query: 287  VHAPILPRFIEKECDDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
               P+       + +  ++E  E++  R K + G                +    RL+ E
Sbjct: 811  DVKPVKDELYTPKIEGAEEEIREQSYKRAKMIYG------------DPLPEIVEARLEKE 858

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----- 399
            L  I    F+  +LI    ++ +  +   VG  RGS   S+ A    IT+++PL      
Sbjct: 859  LKSIIGHGFAVIYLIAHKLVKKSLNDGYLVG-SRGSVGSSLVATMTEITEVNPLPPHYVC 917

Query: 400  ------------------------------------FSLLFERFLNPDRMSMPDFDIDFC 423
                                                  + FE FL      +PD D++F 
Sbjct: 918  PNCKHSEFFNDGSVGSGFDLPDKNCPACGAKYKKDGHDIPFETFLGFKGDKVPDIDLNFS 977

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D +     Y +  +G E V +  T G++  K A   V       Y+Q   L        
Sbjct: 978  GDYQPRAHAYTKVLFGEEYVYRAGTIGTVAEKTAYGYVK-----GYAQDHNLT------- 1025

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQ 541
                          FR A      +DRL+   Q   G+ R    H  GI++      +  
Sbjct: 1026 --------------FRSA-----EIDRLV---QGCTGVKRTTGQHPGGIIVVPDYMDIYD 1063

Query: 542  LVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
              P+     D  S+   T F+   I    ++K D LG    T+++   D        +D 
Sbjct: 1064 FTPIQYPADDHNSEWRTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SGIDP 1117

Query: 599  SLIPFDDHETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
              IP DD E                 ++   GTLGI +  +  +RQ LE  +P    +++
Sbjct: 1118 KTIPTDDPEVMKIFSGPEPLGVTEEQIMCKTGTLGIPEFGTKFVRQMLEDTKPTTFAELV 1177

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
             +  L     +          N +E I +    +  ++     +++Y    +    L   
Sbjct: 1178 QISGLSHGTDVWLG-------NAQELIQNGTCTLPEVIGCRDDIMVY----LIYQGLEPS 1226

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
             +    + +R+   K +  EM+++            + K    N +    K   Y F K+
Sbjct: 1227 LAFKIMESVRKG--KGLTPEMEEE------------MIKQNVPNWYIESCKKIKYMFPKA 1272

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIK-------- 803
            HA AY +++ + A+ K ++P+ + A   T+  ++ +             KI         
Sbjct: 1273 HATAYVLMAVRIAYFKVYHPLIYYATYFTVRAEDFDLDVMIHGSNSIKAKISEINAKGMD 1332

Query: 804  ------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +      +  P  +     D F +  + +     AI G+GT  A
Sbjct: 1333 ASAKEKSLLTVLELALEMTARGFRFQPIDLYRSEADKFVIDGDSLIPPFNAIPGLGTNAA 1392

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             +I++A  +  F S ED   R    K+++ ++E L   G L+  
Sbjct: 1393 VNIVKAREEGEFLSKEDLQRR---GKVSKTIMEYLDGHGCLESL 1433



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S + ++ +      PAIAITD     S  E        GI+ I 
Sbjct: 341 VELHLHTPMSQMDAVTSASTLVAQAKKWGHPAIAITDHAVAQSFPEAYSAGKKNGIKVIF 400

Query: 72  GC 73
           G 
Sbjct: 401 GV 402


>gi|311030091|ref|ZP_07708181.1| DNA polymerase III PolC [Bacillus sp. m3-13]
          Length = 1437

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 183/945 (19%), Positives = 337/945 (35%), Gaps = 199/945 (21%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             ++  + A   GI          ++ ++   T+  K   P+   + LL     G + + +
Sbjct: 578  LVKMLKDAFEKGI------TFHDELNEHSGTTDAYKRARPS--HVTLLAVNEIGLKNIFK 629

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            +VS  ++ +   +  RI  S LQ++  EG+I+ T    G +       S    E     +
Sbjct: 630  IVSISHM-NYFFRVPRIPRSQLQKL-REGIIVGTACDKGEVFEGMMQKSPDEVEGIAEFY 687

Query: 175  KKL-------FGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              +       +   L + L R     +   + +V+L    E P+VAT N  +L E D   
Sbjct: 688  DYIEVQPPSNYAHLLELELVRDEKALKEIITNIVKLGEKLEKPVVATGNVHYLKETDKIH 747

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFIL 285
             ++L+        +        PD + K   EM++ FS L E  A E  V   ++ + ++
Sbjct: 748  REILVRSQSG---ANPLNRHQLPDVHFKTTDEMLAAFSFLGEEKAKEIVVTNTQKVAGMI 804

Query: 286  QVHAPILPRFIEKECDDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            +   PI       + +   +E  E +  R +++ G                +   +R++ 
Sbjct: 805  EEIKPIKDDLYTPKIEGADEEIREMSYSRARSIYG------------DDLPEIVEKRIEK 852

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            EL  I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL     
Sbjct: 853  ELKSIIGHGFAVIYLISQKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYV 911

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                   + FE FL      +PD D++F
Sbjct: 912  CPSCKKSEFFDDGSVGSGFDLPDKDCPDCGEAFTKDGHDIPFETFLGFKGDKVPDIDLNF 971

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              + +     Y +  +G + V +  T G++  K A   V                     
Sbjct: 972  SGEYQPRAHNYTKVLFGEDYVFRAGTIGTVADKTAYGYV--------------------- 1010

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLS 540
                   +  A+D   R   L    VDRL   S    G+ R    H  GI++      + 
Sbjct: 1011 -------KGYAND---RNLILRGAEVDRL---SAGCTGVRRSTGQHPGGIIVVPDYMDIF 1057

Query: 541  QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+     D  S+   T F+   I    L+K D LG    T+++   D        +D
Sbjct: 1058 DFSPIQYPADDQSSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGID 1111

Query: 598  LSLIPFDDHETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
               IP DD                   ++   GTLGI +  +  +RQ LE  +P    ++
Sbjct: 1112 PKTIPTDDPYVMKIFSGTESLGVTEEQIMCKTGTLGIPEFGTRFVRQMLEDTKPSTFSEL 1171

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            + +  L     +          N +E I +    +  ++     +++Y   + +      
Sbjct: 1172 VQISGLSHGTDVWLG-------NAQELIHNKTCTLSEVIGCRDDIMVY--LIYKGLDPSM 1222

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
             + + E+    + +  + KEEM            KN +      +  ++      Y F K
Sbjct: 1223 AFKIMESVRKGKGLSDEFKEEM-----------IKNDVPAWYIDSCLKI-----KYMFPK 1266

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNI 814
            +HAAAY +++ + A+ K H+P+ + AA  T+  D+ +          I+K  ++     +
Sbjct: 1267 AHAAAYVLMAVRIAYFKVHFPLMYYAAYFTVRADDFDIDTMVKGSAAIRKVVEEINAKGL 1326

Query: 815  QIMPPS-------------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            +  P                             +   DF +  + +     +I G+GT  
Sbjct: 1327 EASPKEKSLLTVMELALEMSERGFSFKKVDLYKSSATDFLIEGDSLIPPFNSIPGLGTNA 1386

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            A +I+ + AD  F S ED   R    ++++ +LE L   G L   
Sbjct: 1387 AINIVNSRADGEFLSKEDLQQR---GRISKTILEYLDNHGCLTGL 1428



 Score = 69.6 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+++++ +       AIA+TD     +  E        G++ + 
Sbjct: 336 VELHLHTPMSTMDAVSSISSLVAQAKKWGHEAIAVTDHAVAQAYPEAYAAGKKNGVKILY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G ++++         N           +V  V T
Sbjct: 396 GLEVNLVDDGVPIAYNPAHRNLAEETYVVFDVET 429


>gi|158320555|ref|YP_001513062.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs]
 gi|158140754|gb|ABW19066.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs]
          Length = 1441

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 187/955 (19%), Positives = 348/955 (36%), Gaps = 199/955 (20%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +      I+ +           N K++ +          I++L     G + L  L
Sbjct: 582  IKFVEMMNKKDIRTLKDI--------NDKLSKKLDYKTLKSYHIIILAKNYIGLENLYRL 633

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS  ++ +   +  RI  S L +   EGLI+ T   +G + ++   +  Q   +++  + 
Sbjct: 634  VSESHI-NYFYKKPRIPRSLLNKF-REGLILGTACEAGELFQSILSSKPQSHIEKIAKYY 691

Query: 175  -----KKLFGDRLYVN--LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                 + +  +R  +   L ++    +    ++V L     +P+VAT +  FL  +D   
Sbjct: 692  DYLEIQPIGNNRFLIEKNLAKNEEDLKELNRKIVDLGERLNIPVVATCDVHFLENKDSIF 751

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI--ARRCSFIL 285
              +LM     +              Y +   EM+  F  L +     V I    R +  +
Sbjct: 752  RKILMTGQGFSDAED------QAPLYFRTTDEMLEEFIYLGKEKAEEVVIHATNRINDAI 805

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            +   PI       E +      E ELR      +     +         +  + RLD EL
Sbjct: 806  EDIIPIPDGTFPPEIEG----SEEELRRMCYEKVRRIYGEDV------PELVKNRLDKEL 855

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------ 399
            N I    ++  ++I    +  + K+   VG  RGS   S  A    IT+++PL       
Sbjct: 856  NSIISNGYAVMYIIAHKLVTKSLKDGYLVG-SRGSVGSSFAATMSDITEVNPLPPHYICP 914

Query: 400  -----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQ 424
                                                 + FE FL  +    PD D++F  
Sbjct: 915  TCKYSHFILDGSIGSGADLPDKNCPQCGESLMKDGHDIPFEVFLGFEGDKEPDIDLNFAG 974

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + + E  +Y +  +G  +V +  T G++  K A   V + +                   
Sbjct: 975  EYQSEAHKYTEELFGKGKVYRAGTIGTIADKTAYGFVRKYV------------------- 1015

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQL 542
                           E +  + ++  +  ++Q   G+ R +  H  G++I   +  + + 
Sbjct: 1016 ---------------EEKQLNYNMSEINRLTQGCTGIKRTSGQHPGGVMIVPANYDIHKF 1060

Query: 543  VPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             P+     D +S +  T F+   I    L+K D LG    ++++   D        V+  
Sbjct: 1061 CPIQYPANDPKSGVITTHFDYHSI-SGRLLKLDILGHDGPSIIKMLEDL-----THVNAL 1114

Query: 600  LIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             IP DD ET  + T+               GTLGI +  +  +RQ L   QP    +++ 
Sbjct: 1115 EIPLDDKETIEIFTSTRPLGITPEDIHCEVGTLGIPEFGTKFVRQMLIDTQPTTFAELVR 1174

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +  L       ++ V N +   +  I            E + VI  ++ +M    +L G 
Sbjct: 1175 ISGLSHGT---DVWVNNAQDLVRNNI-----------AELKDVISTRDDIMNY-LILKGL 1219

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
                A  +   + K      + ++E       ++ + +    +  ++      Y F K+H
Sbjct: 1220 PPKTAFKIMENVRKGKGLTPENEQE-----MKEHNVPEWYIDSCNKI-----KYMFPKAH 1269

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIKKFCQ----- 807
            AAAY  +S++TA+ K HYP  F A   T + ++ +             KIK+        
Sbjct: 1270 AAAYVTMSFRTAYFKVHYPAAFYATYFTTKAEDFDADFIIKGKEAVRLKIKELEAMGNDL 1329

Query: 808  ---------------DARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTAR 851
                           +     I+++P  + T   D FK+ D ++   L  ++GVG   A+
Sbjct: 1330 TAKEKNFLTVLEVALEMYCRGIELLPVDLYTSDADRFKIVDGKLLPPLKGLQGVGENAAK 1389

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
             I+EA  +  F S+ED   R    K+ + V+E+LV  G +     +    L SL 
Sbjct: 1390 SIVEAREEGEFISVEDLRKRT---KITKTVVEALVSHGCIHNMPETNQLSLFSLA 1441



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L +H+  S ++G  S+ NI+ K A     AIA+TD   + +  E        G++ I 
Sbjct: 341 IELHLHTQMSSMDGTSSITNIIKKAAKWGHKAIAVTDHGVVQAFPEAMDAGKKFGVKVIY 400

Query: 72  GC 73
           G 
Sbjct: 401 GM 402


>gi|323701859|ref|ZP_08113529.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
            574]
 gi|323533163|gb|EGB23032.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
            574]
          Length = 1421

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 165/896 (18%), Positives = 317/896 (35%), Gaps = 165/896 (18%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + +LV    G + L +L+S  +L     +  RI    L +   EGL++ +   +G I +
Sbjct: 599  HVTILVKDQVGLKNLYQLISLSHLK-YYHRQPRIPRHELIKY-REGLLVGSACEAGEIFQ 656

Query: 158  AFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHEL 209
            A     SQ   + +  F      + L  +   +   +    +  +    +++ +     +
Sbjct: 657  ALLSGCSQEELEEMAAFYDFLEIQPLGNNEFLLRSGQVGSQEDLKNLNRRIIDIGNKLGI 716

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT +  FL+ ED     +LMA          D        Y K   EM+  FS L E
Sbjct: 717  PVVATGDVHFLNPEDEIYRRILMA---GKGFDDADN---QAPLYFKTTDEMLEEFSYLGE 770

Query: 270  ALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
            A    V I      + ++Q   PI         +  +++       +A            
Sbjct: 771  ATARQVVITNPRMIADMVQTFKPIPDELHPPIIEGAEQQITEMTLRRARE---------- 820

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
            +      +  +QR+D EL  I    F+  +LI    ++ +  +   VG  RGS   S+ A
Sbjct: 821  LYGNPLPEIVQQRIDKELKSIIGNGFAVLYLIAQKLVKKSLDDGYLVG-SRGSVGSSLVA 879

Query: 388  YALTITDIDPLR-----------------------------------------FSLLFER 406
                IT+++ L                                            + FE 
Sbjct: 880  NFCGITEVNSLPPHYRCPKCRHSEFVTDGSAGCGADMPDKVCPQCGTKYVKDGHDIPFEV 939

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL  +   +PD D++F  + +    ++++  +G + V +  T G++  K A   V     
Sbjct: 940  FLGFEGDKVPDIDLNFSGEYQPRAHKFIEELFGKDHVFRAGTIGTIAEKTAFGFVKNYF- 998

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
                                             E R        L  +     G+ R   
Sbjct: 999  ---------------------------------EERNIKKRNAELTRLVLGCAGVKRTTG 1025

Query: 527  THAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  G+++   +  +    P+ R   DV SD   T F+   I    L+K D LG    T+
Sbjct: 1026 QHPGGLMVVPSNLDVHMFTPVQRPADDVNSDTITTHFDYHSIHD-SLVKLDILGHDDPTV 1084

Query: 582  LQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   D             IP DD +T  L ++   LG+   E    +     +     +
Sbjct: 1085 IRMLEDLTGVNAR-----EIPLDDPKTMSLFSSTEALGVTPEEIRS-QVGTYAIPEFGTK 1138

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             +  ++   +P     +V  +   +G +  ++    LI     +    I  ++ +M +  
Sbjct: 1139 FVRQMLVDTKPTTFSELVRISGFSHGTDVWLNNAQDLIRSGTCKLSEAISARDDIM-VYL 1197

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +       +A  +   + K         KE        +G+ +    +  ++      Y 
Sbjct: 1198 IYKNLPPKQAFKIMEGVRKGK-----GVKEEDAEAMRAHGVPEWYIESCRKI-----KYM 1247

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQ---- 807
            F K+HA AY +++++ AW K + P  F AA  T+  D+ +         K+++  +    
Sbjct: 1248 FPKAHATAYVMMAFRIAWFKVYRPEAFYAAYFTVRADDFDAELMVQGPQKLRQTIEAIEE 1307

Query: 808  --------------------DARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVG 846
                                +     I+++P ++     + F +  + +    A ++GVG
Sbjct: 1308 KGNAASTKEKNLLTILEVALEMNCRGIKLLPVNLEKSDANKFLITPDGLLSPFAGLQGVG 1367

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
               A++I+ A  + PF S+ED  +R    K+++ V+E L   G L+    +    L
Sbjct: 1368 RAAAQNIVLARENSPFTSVEDLRNRA---KISKTVIEVLKNHGCLNHLQDTDQMAL 1420



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S  +++ + AA   PA+AITD   + +  E    A  +GI+ I 
Sbjct: 322 VELHLHTKMSAMDSVCSAADVIKQAAAWGHPAVAITDHGVVQAFPEAYNAAKKSGIKLIY 381

Query: 72  GC 73
           G 
Sbjct: 382 GV 383


>gi|220927905|ref|YP_002504814.1| DNA polymerase III PolC [Clostridium cellulolyticum H10]
 gi|219998233|gb|ACL74834.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10]
          Length = 1433

 Score =  452 bits (1164), Expect = e-124,   Method: Composition-based stats.
 Identities = 192/947 (20%), Positives = 349/947 (36%), Gaps = 208/947 (21%)

Query: 50   NNLFSALEF---SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA 106
            +++ +A  F     +    G + I   Q   D + NLK          +    ++LV   
Sbjct: 569  DSMATAKIFIHCLNELKEKGCKNIKDIQNAFDGEVNLK---------ASSYHAIILVKNK 619

Query: 107  EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
             G + L ++VS+ +L     +  R+    L E   EGLI+ +   +G + RA   N S+ 
Sbjct: 620  VGLKNLYKIVSQSHLK-YLYKKPRVPKKLLMEY-REGLILGSACEAGELYRAILNNKSED 677

Query: 167  AEKRLLTF------KKLFGDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSL 218
               +++ F      + L  ++  +N  +    +  +    ++++L   H  P+VAT +  
Sbjct: 678  EISKIVRFYDYLEIQPLGNNQFLINNGKVSSQEELKKINKKIIRLGERHRKPVVATCDVH 737

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALE 272
            F+   D     +LM+    T              Y +   EM+  FS L E       +E
Sbjct: 738  FMDPRDEVFRRILMSGRGFTDADN------QAPLYFRTTEEMLEEFSYLGEEKAREVVIE 791

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
            NT  IA     I  V     P  IE    DI+    N  R K + G E+           
Sbjct: 792  NTNLIADMIESIAPVLEGTFPPKIEGAEQDIENMAMN--RAKEIYGEEL----------- 838

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              +   +RL+ ELN I +  F+  +LI    +  +  +   VG  RGS   S  A    I
Sbjct: 839  -PEVVAKRLEKELNSIIKNGFAVMYLIAQKLVSKSLNDGYLVG-SRGSVGSSFVANMSGI 896

Query: 393  TDIDPLR-----------------------------------------FSLLFERFLNPD 411
            T+++ L+                                         + + FE FL  D
Sbjct: 897  TEVNSLQPHYVCEKCKYSEFILDGSYDCGFDLPEKDCPNCGNKLKKDGYDIPFETFLGFD 956

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
                PD D++F  D +    +Y +  +G   V +  T  S+  K A   V   L      
Sbjct: 957  GDKEPDIDLNFSGDYQPVAHKYTEELFGEGYVFRAGTIASVAEKTAYGYVKNYLDE---- 1012

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                                       R   + +  ++RL+   +   G+ R    H  G
Sbjct: 1013 ---------------------------RSIVVTNAEINRLV---KGCTGIKRTTGQHPGG 1042

Query: 532  IVIG--DRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            I+I   D+ +    P+ R   D++S++  T F+  ++    ++K D LG    T+++   
Sbjct: 1043 IMIVPKDKEIFDFSPIQRPADDIKSEIITTHFDYHFLH-GSILKLDILGHDDPTVIRMLE 1101

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI--------------FQLESSGMRQAL 632
            D        VD   IP  + +T  L ++   LG+               +  +  +RQ L
Sbjct: 1102 DLTG-----VDARTIPIGEKKTMSLFSSTEALGVKPEDIGSETGTFAVPEFGTKFVRQML 1156

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
               +P    ++I +  L       ++ + N ++  ++ I ++   I             +
Sbjct: 1157 LDTKPQSFSELIRISGLSHGT---DVWLNNAQELIRDGITTLSQSI-----------CCR 1202

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            + +M I  + +G     A         KI E  D +K + +    +  + +    + +  
Sbjct: 1203 DDIM-IYLMHAGLPPKTA--------FKIME--DVRKGKGVKEEYEAIMKENNVPDWYIQ 1251

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------ 800
              K   Y F K+HAAAY +++++ AW K +YP  F A   T+  D+ +            
Sbjct: 1252 SCKKIKYMFPKAHAAAYVMMAFRIAWFKVYYPEAFYATYFTVRADDFDAEMMTYGQDKVR 1311

Query: 801  -KIKKF--------------------CQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYS 838
             KIK+F                      +     I  +P ++       F++ D  I   
Sbjct: 1312 NKIKEFEMKGNNITTKEKNVLTILEVVNEMYARGINFLPINLYLSEATKFRIEDKSIRPP 1371

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            + A++G+G   A++I+EA  +  F S+++  +R    K    +LE  
Sbjct: 1372 MNALQGLGGAAAQNIIEARKNGEFLSIDELRTRAKISKSVIEILERN 1418



 Score = 78.9 bits (193), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 31/65 (47%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++G  ++ +++ + A     AIA+TD   + +  +    +    I+ I 
Sbjct: 337 VELHLHTQMSSMDGVTAVKDLVKRAAQWGHKAIAVTDHGIVQAYPDAYAASKKNNIKVIY 396

Query: 72  GCQLD 76
           G +  
Sbjct: 397 GLECY 401


>gi|157692337|ref|YP_001486799.1| DNA polymerase III PolC [Bacillus pumilus SAFR-032]
 gi|157681095|gb|ABV62239.1| DNA-directed DNA polymerase III alpha subunit [Bacillus pumilus
            SAFR-032]
          Length = 1437

 Score =  452 bits (1164), Expect = e-124,   Method: Composition-based stats.
 Identities = 173/931 (18%), Positives = 310/931 (33%), Gaps = 187/931 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++      +    Q N  M              +L+     G + L +LVS  ++     
Sbjct: 582  LKDAAEKDIAYHDQLNENMGQSNAYQRSRPYHAILIAQNETGLKNLFKLVSLSHIH-YFY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY- 183
            +  RI  S L++   EGLI+ +    G +       S    E     +   ++    +Y 
Sbjct: 641  RVPRIPRSQLEKY-REGLIIGSACDKGEVFEGMMQKSPDEVEDIAAFYDYLEVHPPEVYQ 699

Query: 184  ----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
                + L R     +   + +V+L      P+VAT N  +L  ED     +L++      
Sbjct: 700  HLLQLELVRDERALKEIITNIVKLGEKLNKPVVATGNVHYLHPEDKIYRKILISSQGG-- 757

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ S +++   PI      
Sbjct: 758  -ANPLNRHELPKVHFRTTDEMLEAFSFLGEEKAKEIVVTNTKKVSEMVESIKPIKDDLYT 816

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      + E+R  +                   +    R++ EL  I    F+  +
Sbjct: 817  PKIEGA----DEEIREMSYQMARSIYGDDL------PKIVEDRIEKELKSIIGHGFAVIY 866

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------------- 398
            LI    ++ +  +   VG  RGS   S+ A    IT+++PL                   
Sbjct: 867  LISHKLVKKSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLAPHYVCPSCKHSEFFNDGS 925

Query: 399  ----------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 926  VGSGFDLPDKDCPECGTPYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPIAHNYTKE 985

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G E V +  T G++  K A   V                                   
Sbjct: 986  LFGEEYVYRAGTIGTVAEKTAYGYVKGYAGDH---------------------------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRS 551
                  +    +DRL+   Q   G+ R    H  GI++      +    P+        S
Sbjct: 1018 ---NLHMRGAEIDRLV---QGCTGVKRTTGQHPGGIIVVPDYMDIYDFSPIQFPADATGS 1071

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            D   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1072 DWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1125

Query: 612  LT--------------TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1126 FQGTEPLGVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHGTDVWL 1185

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
                    N +E I +    +  ++     +++Y   + Q  +    + + E+    + +
Sbjct: 1186 G-------NAQELIHNKTCELSEVIGCRDDIMVY--LIYQGLEPSLAFKIMESVRKGKGL 1236

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              + +EEM                      N +    K   Y F K+HAAAY +++ + A
Sbjct: 1237 PPEWEEEM----------------KNNNVPNWYIDSCKKIKYMFPKAHAAAYVLMAVRIA 1280

Query: 778  WMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVN------ 822
            + K H+ + + AA  T+  D+ +          I+    D     +   P   N      
Sbjct: 1281 YFKVHHALLYYAAYFTVRADDFDIETMTKGSNAIRAVMDDINSKGLDASPKEKNLLTVLE 1340

Query: 823  -------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
                               +   +F +  + +     +I G+GT  A +I+ A  D  F 
Sbjct: 1341 LALEMCERGYHFKKVDLYRSSATEFIIDGDGLIPPFNSIPGLGTNVALNIVRARQDGEFL 1400

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            S ED   R    K+++ +LE L   G L+  
Sbjct: 1401 SKEDLQKR---GKVSKTILEYLDRQGCLEAL 1428



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++    +  ++++       AIA+TD   + S  +    +    I+ + 
Sbjct: 335 VELHLHSPMSQMDAVTGIGRLVEQAKKWGHEAIALTDHAVVQSFPDAYAASRKHDIKMMY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G ++++         N           +V  V T
Sbjct: 395 GVEINLVDDGVPIAYNPEHRLLEDATYVVFDVET 428


>gi|307264910|ref|ZP_07546472.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
            Rt8.B1]
 gi|306920168|gb|EFN50380.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
            Rt8.B1]
          Length = 1407

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 177/902 (19%), Positives = 324/902 (35%), Gaps = 172/902 (19%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            V  + +LV   +G + L E++S+  L +   ++ RI  S L  +  EGLI+ +    G +
Sbjct: 583  VYHVTILVKDQKGLRNLYEIISKSNL-EYFHRTPRIPKSLLISM-REGLIIGSACEQGEV 640

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTH 207
             RA   N  +   + +++F      + +  +   +     +  +  RE   ++  L   +
Sbjct: 641  FRAIVSNLEEKKLENIISFYDYLEVQPVGNNEFLIEKGEVKSVEELREINRKIYLLGKKY 700

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
               +VAT +  FL   D     +LMA          DR    P  Y K   EM+  F  L
Sbjct: 701  NKLVVATGDVHFLDPWDNIYRKILMA---GKGYKDADR---QPPLYFKTTDEMLKEFEYL 754

Query: 268  PE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
             E  A E  ++   + + +++   PI     +     + +  E ELR   +         
Sbjct: 755  GEEVAKEIVIDNPNKIADLVEEVKPI----PDGTFPPVIEGAEEELRKLTLDKAHEIYGD 810

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                     +  + RLD ELN I    ++  ++I    +  + K+   VG  RGS   S+
Sbjct: 811  ------PLPEIVQNRLDRELNSIINNGYAVMYIIAQKLVSKSLKDGYLVG-SRGSVGSSL 863

Query: 386  TAYALTITDIDPLR-----------------------------------------FSLLF 404
             A    IT+++PL                                          F + F
Sbjct: 864  VATMSGITEVNPLPPHYVCPNCKYSEFITDGSYGCGVDMPDKTCPDCGTLMKKDGFDIPF 923

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  +    PD D++F  + +    +Y +  +G   V +  T G+L  K A   V + 
Sbjct: 924  EVFLGFEGDKEPDIDLNFSGEYQPIAHKYTEELFGKGHVFRAGTIGTLADKTAYGYVKKY 983

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                                              R   +    + RL   +    G+ R 
Sbjct: 984  F-------------------------------EERNLIVHKSEIKRL---TIGCTGVKRT 1009

Query: 525  ASTHAAGIVIGDRP--LSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GI++  +   +    P+        +D+  T F+   I    L+K D LG    
Sbjct: 1010 TGQHPGGIMVVPKDKSIYDFTPIQHPADAEDTDVITTHFDYHSI-SGRLLKLDILGHDDP 1068

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            T+++   D             IP DD +T  L T+   LGI   E +       G+    
Sbjct: 1069 TVIRMLEDLTGVNAR-----EIPLDDKKTMSLFTSVEALGIDPEELN-TPVGTLGLPEFG 1122

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQI 698
             + +  ++    P     +V  +   +G +  ++    +I   +   + VI  ++ +M  
Sbjct: 1123 TKFVRQMLIDTHPTTFAELVRISGLSHGTDVWLNNAQDIIREGIATLKEVISTRDDIMLY 1182

Query: 699  AQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
                 +    S    + +R+  G    EE+++ K        K+G+      +  ++   
Sbjct: 1183 LISKGMDKKLSFKIMENVRKGKG-VAPEEIEEMK--------KHGVPNWFIESCQKI--- 1230

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFC 806
               Y F K+HA AY +++++ A+ K HYP  F A   T+  D+          + IK   
Sbjct: 1231 --KYMFPKAHAVAYVIMAFRIAYFKVHYPEAFYATYFTVRADDFNLDIVLKGKDSIKNAI 1288

Query: 807  QDARQFNIQIMPPS-------------------------VNTPCVDFKVGDNRIYYSLAA 841
            ++         P                             +  V F + +  +   L +
Sbjct: 1289 KEIEAKGNNASPKEKSLLTVLEVALEMYLRGFKFINVDLYKSDAVKFLITEEGLLPPLNS 1348

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQ 900
            ++GVG   A+ I +   +  F S+EDF +R    K+++ V+E L   G L D    +++ 
Sbjct: 1349 LEGVGIQAAKTIAQERENGKFLSVEDFRNRT---KVSKTVIEILKQYGCLTDLPESNQLS 1405

Query: 901  LL 902
            L 
Sbjct: 1406 LF 1407



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S   ++ + A     AIAITD   + +  E  + +   G++ I 
Sbjct: 309 VELHLHTQMSSMDAVASATEVIKRAAKWGHKAIAITDHAVVQAFPEAMEASYKYGVKVIY 368

Query: 72  GC 73
           G 
Sbjct: 369 GV 370


>gi|205373423|ref|ZP_03226227.1| DNA polymerase III PolC [Bacillus coahuilensis m4-4]
          Length = 1436

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 168/941 (17%), Positives = 320/941 (34%), Gaps = 195/941 (20%)

Query: 57   EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            +  ++     I+        +   D+ K                L+     G + L +L+
Sbjct: 579  KLLKETYEKEIKYHDQLNDYMGEGDSYKRARP--------YHCTLIAQNDTGLKNLFKLI 630

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S  +L     +  RI  S LQ+   EG+++ +G   G +       S +  E +   +  
Sbjct: 631  SISHLH-YFHRVPRIPRSVLQKY-REGILVGSGCDKGEVFEGMMQKSPEEVEDKARFYDY 688

Query: 175  -----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                 K+++   + + L +           +V L    E P+VA+ N  +   +D     
Sbjct: 689  FEVHPKEVYSHLIELELVQSEKNLEDIIHNIVALGEKLETPVVASGNVHYKDPKDSIYRK 748

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQV 287
            +L+        +        P  + +   EM+  F  L   +A E  V      + ++  
Sbjct: 749  ILIGSQGG---ANPLNRHNLPKVHFRTTDEMLHAFEFLGNEKAKEIVVTNTNLIADMIDE 805

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              PI       + D      + E+R  + +  +    +         +    R++ EL  
Sbjct: 806  IKPIKDDLYTPKIDGA----DEEIRRMSYSMAKSIYGENL------PEIVEARIEKELKS 855

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------- 399
            I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL         
Sbjct: 856  IIGHGFAVIYLISHKLVKKSLIDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPTC 914

Query: 400  ---------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDR 426
                                               + FE FL      +PD D++F  + 
Sbjct: 915  KKSEFFDDGSVGSGFDLSNKSCPDCDVPYTKDGHDIPFETFLGFKGDKVPDIDLNFSGEY 974

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +     Y +  +G + V +  T G++  K A   V                         
Sbjct: 975  QPRAHDYTKVLFGEDNVFRAGTIGTVAEKTAFGYV------------------------- 1009

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVP 544
               +  A D+      +    VDRL+   +   G+ R    H  GI++      +    P
Sbjct: 1010 ---KGYASDNNL---TIRGAEVDRLV---KGCTGVKRTTGQHPGGIIVVPDYMDIYDFSP 1060

Query: 545  MY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            +     D  S+   T F+   I    L+K D LG    T+++   D        +D   I
Sbjct: 1061 IQFPADDRTSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTI 1114

Query: 602  PFDDHETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            P DD E                 +L   GTLGI +  +  +RQ LE  +P    +++ + 
Sbjct: 1115 PTDDPEVMKIFSGTESLGVTEEQILCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQIS 1174

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             L     +          N +E I +    +  ++     +++Y    +    L    + 
Sbjct: 1175 GLSHGTDVWLG-------NAQELIHNQTCTLSEVIGCRDDIMVY----LIYQGLEPSLAF 1223

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
               + +R+   K ++ EM+++            + K    + +    K   Y F K+HAA
Sbjct: 1224 KIMESVRKG--KGLQPEMEEE------------MKKNNVPDWYIDSCKKIKYMFPKAHAA 1269

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMP 818
            AY +++ + A+ K H+P+ + AA  T+  ++ +          I+   ++     +   P
Sbjct: 1270 AYVLMAVRIAYFKVHHPILYYAAYFTVRAEDFDVDAMAKGPMSIRAKVEEILAKGLDAAP 1329

Query: 819  PS-------------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
                                         +   +F +  N +     AI G+GT  A +I
Sbjct: 1330 KEKSLLTVLELALEMTERGFSFQKVHLYKSHASEFIIEGNTLIPPFNAIPGLGTNAAINI 1389

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            ++A  +  F S ED   R    K+++ ++E L   G L   
Sbjct: 1390 VKAREEGEFLSKEDLQQR---GKVSKTIIEYLDNHGCLGSL 1427



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 35/94 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S   ++ + A     AIAITD     S  E        GI+ + 
Sbjct: 335 VELHLHTPMSSMDAVTSTGELVAQAAKWGHKAIAITDHAVAQSFPEAYGAGKKNGIKILY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N      P    IV  V T
Sbjct: 395 GVEANLVDDGVPIAYNTSHRFLPESTYIVFDVET 428


>gi|56419793|ref|YP_147111.1| DNA polymerase III PolC [Geobacillus kaustophilus HTA426]
 gi|56379635|dbj|BAD75543.1| DNA-directed DNA polymerase III alpha chain [Geobacillus kaustophilus
            HTA426]
          Length = 1444

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 178/954 (18%), Positives = 325/954 (34%), Gaps = 200/954 (20%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             +   ++A   GI            + N +  ++          + LL     G + L +
Sbjct: 585  LMRLLKEAEERGI--------LFHDELNSRTHSEASYRLARPFHVTLLAQNETGLKNLFK 636

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L +   +GL++ +G   G +       + +  E     +
Sbjct: 637  LVSLSHI-QYFHRVPRIPRSVLVK-HRDGLLVGSGCDKGELFDNLIQKAPEEVEDIARFY 694

Query: 175  K--KLFGDRLY---VNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               ++    +Y   + +   +  +  +     +V L    ++P+VAT N  +L+ ED   
Sbjct: 695  DFLEVHPPDVYKPLIEMDYVKDEEMIKNIIRSIVALGEKLDIPVVATGNVHYLNPEDKIY 754

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFIL 285
              +L+        +        PD Y +  +EM+  FS L   +A E  V+  ++ + ++
Sbjct: 755  RKILIHSQGG---ANPLNRHELPDVYFRTTNEMLDCFSFLGPEKAKEIVVDNTQKIASLI 811

Query: 286  QVHAPILPRFIEKECDDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                PI         +   +E  E +  R K + G                +   +RL+ 
Sbjct: 812  GDVKPIKDELYTPRIEGADEEIREMSYRRAKEIYG------------DPLPKLVEERLEK 859

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            EL  I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL     
Sbjct: 860  ELKSIIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYV 918

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                   + FE FL      +PD D++F
Sbjct: 919  CPNCKHSEFFNDGSVGSGFDLPDKNCPRCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNF 978

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              + +     Y +  +G + V +  T G++  K A   V                     
Sbjct: 979  SGEYQPRAHNYTKVLFGEDNVYRAGTIGTVADKTAYGFV--------------------- 1017

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLS 540
                   +A A D       L    +DRL   +    G+ R    H  GI++      + 
Sbjct: 1018 -------KAYASDHNLE---LRGAEIDRL---AAGCTGVKRTTGQHPGGIIVVPDYMEIY 1064

Query: 541  QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+     D  S+   T F+   I    L+K D LG    T+++   D        +D
Sbjct: 1065 DFTPIQYPADDTSSEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGID 1118

Query: 598  LSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDI 643
               IP DD +   + ++               GT+GI +  +  +RQ LE  +P    ++
Sbjct: 1119 PKTIPTDDPDVMGIFSSTEPLGVTPEQIMCNVGTIGIPEFGTRFVRQMLEETRPKTFSEL 1178

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            + +  L     +                 +   LI         VI  ++ +M +  +  
Sbjct: 1179 VQISGLSHGTDVWLG--------------NAQELIQNGTCTLSEVIGCRDDIM-VYLIYR 1223

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G   S A  +  ++ K      + + E       +  I             K   Y F K
Sbjct: 1224 GLEPSLAFKIMESVRKGKGLTPEFEAEMRKHDVPEWYID----------SCKKIKYMFPK 1273

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNI 814
            +HAAAY +++ + A+ K H+P+ + A+  T+  ++ +          I+K  ++     I
Sbjct: 1274 AHAAAYVLMAVRIAYFKVHHPLLYYASYFTVRAEDFDLDAMIKGSAAIRKRIEEINAKGI 1333

Query: 815  QIMPPS-------------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            Q                                +   +F +  N +     AI G+GT  
Sbjct: 1334 QATAKEKSLLTVLEVALEMCERGFSFKNIDLYRSQATEFVIDGNSLIPPFNAIPGLGTNV 1393

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL 902
            A+ I+ A  +  F S ED   R    K     LES    G LD    ++++ L 
Sbjct: 1394 AQAIVRAREEGEFLSKEDLQQRGKLSKTLLEYLES---RGCLDSLPDHNQLSLF 1444



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+  ++++      PAIA+TD   + S  E    A   G++ I 
Sbjct: 343 VELHLHTPMSQMDAVTSVTKLIEQAKKWGHPAIAVTDHAVVQSFPEAYSAAKKHGMKVIY 402

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 403 GLEANIVDDGVPIAYNETHRRLSEETYVVFDVET 436


>gi|261419458|ref|YP_003253140.1| DNA polymerase III subunit chi [Geobacillus sp. Y412MC61]
 gi|319766273|ref|YP_004131774.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC52]
 gi|261375915|gb|ACX78658.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC61]
 gi|317111139|gb|ADU93631.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC52]
          Length = 1444

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 178/954 (18%), Positives = 325/954 (34%), Gaps = 200/954 (20%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             +   ++A   GI            + N +  ++          + LL     G + L +
Sbjct: 585  LMRLLKEAEERGI--------LFHDELNSRTHSEASYRLARPFHVTLLAQNETGLKNLFK 636

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L +   +GL++ +G   G +       + +  E     +
Sbjct: 637  LVSLSHI-QYFHRVPRIPRSVLVK-HRDGLLVGSGCDKGELFDNLIQKAPEEVEDIARFY 694

Query: 175  K--KLFGDRLY---VNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               ++    +Y   + +   +  +  +     +V L    ++P+VAT N  +L+ ED   
Sbjct: 695  DFLEVHPPDVYKPLIEMDYVKDEEMIKNIIRSIVALGEKLDIPVVATGNVHYLNPEDKIY 754

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFIL 285
              +L+        +        PD Y +  +EM+  FS L   +A E  V+  ++ + ++
Sbjct: 755  RKILIHSQGG---ANPLNRHELPDVYFRTTNEMLDCFSFLGPEKAKEIVVDNTQKIASLI 811

Query: 286  QVHAPILPRFIEKECDDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                PI         +   +E  E +  R K + G                +   +RL+ 
Sbjct: 812  GDVKPIKDELYTPRIEGADEEIREMSYRRAKEIYG------------DPLPKLVEERLEK 859

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            EL  I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL     
Sbjct: 860  ELKSIIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYV 918

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                   + FE FL      +PD D++F
Sbjct: 919  CPNCKHSEFFNDGSVGSGFDLPDKNCPRCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNF 978

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              + +     Y +  +G + V +  T G++  K A   V                     
Sbjct: 979  SGEYQPRAHNYTKVLFGEDNVYRAGTIGTVADKTAYGFV--------------------- 1017

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLS 540
                   +A A D       L    +DRL   +    G+ R    H  GI++      + 
Sbjct: 1018 -------KAYASDHNLE---LRGAEIDRL---AAGCTGVKRTTGQHPGGIIVVPDYMEIY 1064

Query: 541  QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+     D  S+   T F+   I    L+K D LG    T+++   D        +D
Sbjct: 1065 DFTPIQYPADDTSSEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGID 1118

Query: 598  LSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDI 643
               IP DD +   + ++               GT+GI +  +  +RQ LE  +P    ++
Sbjct: 1119 PKTIPTDDPDVMGIFSSTEPLGVTPEQIMCNVGTIGIPEFGTRFVRQMLEETRPKTFSEL 1178

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            + +  L     +                 +   LI         VI  ++ +M +  +  
Sbjct: 1179 VQISGLSHGTDVWLG--------------NAQELIQNGTCTLSEVIGCRDDIM-VYLIYR 1223

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G   S A  +  ++ K      + + E       +  I             K   Y F K
Sbjct: 1224 GLEPSLAFKIMESVRKGKGLTPEFEAEMRKHDVPEWYID----------SCKKIKYMFPK 1273

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNI 814
            +HAAAY +++ + A+ K H+P+ + A+  T+  ++ +          I+K  ++     I
Sbjct: 1274 AHAAAYVLMAVRIAYFKVHHPLLYYASYFTVRAEDFDLDAMIKGSAAIRKRIEEINAKGI 1333

Query: 815  QIMPPS-------------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            Q                                +   +F +  N +     AI G+GT  
Sbjct: 1334 QATAKEKSLLTVLEVALEMCERGFSFKNIDLYRSQATEFVIDGNSLIPPFNAIPGLGTNV 1393

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL 902
            A+ I+ A  +  F S ED   R    K     LES    G LD    ++++ L 
Sbjct: 1394 AQAIVRAREEGEFLSKEDLQQRGKLSKTLLEYLES---RGCLDSLPDHNQLSLF 1444



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+  ++++      PAIA+TD   + S  E    A   G++ I 
Sbjct: 343 VELHLHTPMSQMDAVTSVTKLIEQAKKWGHPAIAVTDHAVVQSFPEAYSAAKKHGMKVIY 402

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 403 GLEANIVDDGVPIAYNETHRRLSEETYVVFDVET 436


>gi|138894778|ref|YP_001125231.1| DNA polymerase III PolC [Geobacillus thermodenitrificans NG80-2]
 gi|134266291|gb|ABO66486.1| DNA polymerase III alpha subunit [Geobacillus thermodenitrificans
            NG80-2]
          Length = 1442

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 177/954 (18%), Positives = 331/954 (34%), Gaps = 200/954 (20%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             +   ++A   GI            + N +  ++          + LL     G + L +
Sbjct: 583  LMRLLKEAEERGI--------LYHDELNSRTHSEASYRLSRPFHVTLLAQNETGLKNLFK 634

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L +   +GL++ +G   G +       + +  E+    +
Sbjct: 635  LVSLSHV-QYFHRVPRIPRSVLVK-HRDGLLVGSGCDKGELFDNLIQKAPEEVEEIARFY 692

Query: 175  K--KLFGDRLY---VNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               ++    +Y   + +   +  +  ++    +V L    ++P+VAT N  +L+ ED   
Sbjct: 693  DFLEVHPPAVYKPLIEMDYVKDEEMIKDIIRSIVALGEKLDIPVVATGNVHYLNPEDKIY 752

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFIL 285
              +L+        +        PD Y +   EM+  FS L   +A E  V+  ++ + ++
Sbjct: 753  RKILIHSQGG---ANPLNRHELPDVYFRTTDEMLDCFSFLGAEKAKEIVVDNTQKIASLI 809

Query: 286  QVHAPILPRFIEK--ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                PI         E  D +  E +  R K + G                +   +RL+ 
Sbjct: 810  GEVKPIKDDLYTPRIEGADDEIREMSYRRAKDIYG------------DPLPKIVEERLEK 857

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            EL  I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL     
Sbjct: 858  ELKSIIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYV 916

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                   + FE FL      +PD D++F
Sbjct: 917  CPNCKHSEFFNDGSVGSGFDLPDKNCPQCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNF 976

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              + +     Y +  +G + V +  T G++  K A   V                     
Sbjct: 977  SGEYQPRAHNYTKVLFGEDNVYRAGTIGTVADKTAYGFV--------------------- 1015

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLS 540
                   +  A D       L    +DRL   +    G+ R    H  GI++      + 
Sbjct: 1016 -------KGYASDHNLE---LRGAEIDRL---AAGCTGVKRTTGQHPGGIIVVPDYMEIY 1062

Query: 541  QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+     D  S+   T F+   I    L+K D LG    T+++   D        +D
Sbjct: 1063 DFTPIQYPADDTSSEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGID 1116

Query: 598  LSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDI 643
               IP DD +   + ++               GT+GI +  +  +RQ LE  +P    ++
Sbjct: 1117 PKTIPTDDPDVMGIFSSTEPLGVTPEQIMCNVGTIGIPEFGTRFVRQMLEETKPKTFSEL 1176

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            + +  L     +                 +   LI         VI  ++ +M +  +  
Sbjct: 1177 VQISGLSHGTDVWLG--------------NAQELIQNGTCTLSEVIGCRDDIM-VYLIYR 1221

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G   S A  +  ++ K      + ++E       +  I             K   Y F K
Sbjct: 1222 GLEPSLAFKIMESVRKGKGLTPEFEEEMRKHDVPEWYID----------SCKKIKYMFPK 1271

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNI 814
            +HAAAY +++ + A+ K H+P+ + A+  T+  ++ +          I+K  ++     I
Sbjct: 1272 AHAAAYVLMAVRIAYFKVHHPLLYYASYFTVRAEDFDLDAMIKGSAAIRKRIEEINAKGI 1331

Query: 815  QIMPPS-------------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            Q                                +   +F +  + +     AI G+GT  
Sbjct: 1332 QATAKEKSLLTVLEVALEMCERGFTFKNIDLYRSQATEFVIDGHSLIPPFNAIPGLGTNV 1391

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL 902
            A++I+ A  +  F S ED   R    K+++ +LE L   G LD    ++++ L 
Sbjct: 1392 AQNIVRAREEGEFLSKEDLQQR---GKVSKTLLEYLESRGCLDSLPDHNQLSLF 1442



 Score = 77.7 bits (190), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+  ++++      PA+AITD   + S  E    A   G++ + 
Sbjct: 341 VELHLHTPMSQMDAVTSVAKLIEQAKKWGHPAVAITDHAVVQSFPEAYSAAKKHGMKVLY 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 401 GMEANIVDDGVPIAYNEAHRRLSDETYVVFDVET 434


>gi|196247598|ref|ZP_03146300.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
 gi|196212382|gb|EDY07139.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
          Length = 1434

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 177/954 (18%), Positives = 331/954 (34%), Gaps = 200/954 (20%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             +   ++A   GI            + N +  ++          + LL     G + L +
Sbjct: 575  LMRLLKEAEERGI--------LYHDELNSRTHSEASYRLSRPFHVTLLAQNETGLKNLFK 626

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L +   +GL++ +G   G +       + +  E+    +
Sbjct: 627  LVSLSHV-QYFHRVPRIPRSVLVK-HRDGLLVGSGCDKGELFDNLIQKAPEEVEEIARFY 684

Query: 175  K--KLFGDRLY---VNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               ++    +Y   + +   +  +  ++    +V L    ++P+VAT N  +L+ ED   
Sbjct: 685  DFLEVHPPAVYKPLIEMDYVKDEEMIKDIIRSIVALGEKLDIPVVATGNVHYLNPEDKIY 744

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFIL 285
              +L+        +        PD Y +   EM+  FS L   +A E  V+  ++ + ++
Sbjct: 745  RKILIHSQGG---ANPLNRHELPDVYFRTTDEMLDCFSFLGAEKAKEIVVDNTQKIASLI 801

Query: 286  QVHAPILPRFIEK--ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                PI         E  D +  E +  R K + G                +   +RL+ 
Sbjct: 802  GEVKPIKDDLYTPRIEGADDEIREMSYRRAKDIYG------------DPLPKIVEERLEK 849

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            EL  I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL     
Sbjct: 850  ELKSIIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYV 908

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                   + FE FL      +PD D++F
Sbjct: 909  CPNCKHSEFFNDGSVGSGFDLPDKNCPQCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNF 968

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              + +     Y +  +G + V +  T G++  K A   V                     
Sbjct: 969  SGEYQPRAHNYTKVLFGEDNVYRAGTIGTVADKTAYGFV--------------------- 1007

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLS 540
                   +  A D       L    +DRL   +    G+ R    H  GI++      + 
Sbjct: 1008 -------KGYASDHNLE---LRGAEIDRL---AAGCTGVKRTTGQHPGGIIVVPDYMEIY 1054

Query: 541  QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+     D  S+   T F+   I    L+K D LG    T+++   D        +D
Sbjct: 1055 DFTPIQYPADDTSSEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGID 1108

Query: 598  LSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDI 643
               IP DD +   + ++               GT+GI +  +  +RQ LE  +P    ++
Sbjct: 1109 PKTIPTDDPDVMGIFSSTEPLGVTPEQIMCNVGTIGIPEFGTRFVRQMLEETKPKTFSEL 1168

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            + +  L     +                 +   LI         VI  ++ +M +  +  
Sbjct: 1169 VQISGLSHGTDVWLG--------------NAQELIQNGTCTLSEVIGCRDDIM-VYLIYR 1213

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G   S A  +  ++ K      + ++E       +  I             K   Y F K
Sbjct: 1214 GLEPSLAFKIMESVRKGKGLTPEFEEEMRKHDVPEWYID----------SCKKIKYMFPK 1263

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNI 814
            +HAAAY +++ + A+ K H+P+ + A+  T+  ++ +          I+K  ++     I
Sbjct: 1264 AHAAAYVLMAVRIAYFKVHHPLLYYASYFTVRAEDFDLDAMIKGSAAIRKRIEEINAKGI 1323

Query: 815  QIMPPS-------------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            Q                                +   +F +  + +     AI G+GT  
Sbjct: 1324 QATAKEKSLLTVLEVALEMCERGFTFKNIDLYRSQATEFVIDGHSLIPPFNAIPGLGTNV 1383

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL 902
            A++I+ A  +  F S ED   R    K+++ +LE L   G LD    ++++ L 
Sbjct: 1384 AQNIVRAREEGEFLSKEDLQQR---GKVSKTLLEYLESRGCLDSLPDHNQLSLF 1434



 Score = 77.7 bits (190), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+  ++++      PA+AITD   + S  E    A   G++ + 
Sbjct: 333 VELHLHTPMSQMDAVTSVAKLIEQAKKWGHPAVAITDHAVVQSFPEAYSAAKKHGMKVLY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 393 GMEANIVDDGVPIAYNEAHRRLSDETYVVFDVET 426


>gi|194015013|ref|ZP_03053630.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            pumilus ATCC 7061]
 gi|194014039|gb|EDW23604.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            pumilus ATCC 7061]
          Length = 1437

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 173/931 (18%), Positives = 311/931 (33%), Gaps = 187/931 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++      +    Q N  M              +L+     G + L +LVS  ++     
Sbjct: 582  LKDAAEKDIAYHDQLNENMGQSNAYQRSRPYHAILIAQNETGLKNLFKLVSLSHIH-YFY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY- 183
            +  RI  S L++   EGLI+ +    G +       S    E     +   ++    +Y 
Sbjct: 641  RVPRIPRSQLEKY-REGLIIGSACDKGEVFEGMMQKSPDEVEDIAAFYDYLEVHPPEVYQ 699

Query: 184  ----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
                + L R     +   + +V+L      P+VAT N  +L +ED     +L++      
Sbjct: 700  HLLQLELVRDERALKEIITNIVKLGEKLNKPVVATGNVHYLHQEDKIYRKILISSQGG-- 757

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ S +++   PI      
Sbjct: 758  -ANPLNRHELPKVHFRTTDEMLEAFSFLGEEKAKEIVVTNTKKVSEMVESIKPIKDDLYT 816

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      + E+R  +                   +    R++ EL  I    F+  +
Sbjct: 817  PKIEGA----DEEVREMSYQMARSIYGDDL------PKIVEDRIEKELKSIIGHGFAVIY 866

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------------- 398
            LI    ++ +  +   VG  RGS   S+ A    IT+++PL                   
Sbjct: 867  LISHKLVKKSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLAPHYVCPSCKHSEFFNDGS 925

Query: 399  ----------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 926  VGSGFDLPDKDCPECGTPYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPIAHNYTKE 985

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G E V +  T G++  K A   V                                   
Sbjct: 986  LFGEEYVYRAGTIGTVAEKTAYGYVKGYAGDH---------------------------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRS 551
                  +    +DRL+   Q   G+ R    H  GI++      +    P+        S
Sbjct: 1018 ---NLHMRGAEIDRLV---QGCTGVKRTTGQHPGGIIVVPDYMDIYDFSPIQFPADATGS 1071

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            D   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1072 DWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1125

Query: 612  LT--------------TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1126 FQGTEPLGVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHGTDVWL 1185

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
                    N +E I +    +  ++     +++Y   + Q  +    + + E+    + +
Sbjct: 1186 G-------NAQELIHNKTCELSEVIGCRDDIMVY--LIYQGLEPSLAFKIMESVRKGKGL 1236

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              + +EEM                      N +    K   Y F K+HAAAY +++ + A
Sbjct: 1237 PPEWEEEM----------------KNNNVPNWYIDSCKKIKYMFPKAHAAAYVLMAVRIA 1280

Query: 778  WMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVN------ 822
            + K H+ + + AA  T+  D+ +          I+    D     +   P   N      
Sbjct: 1281 YFKVHHALLYYAAYFTVRADDFDIETMTKGSNAIRAVMDDINSKGLDASPKEKNLLTVLE 1340

Query: 823  -------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
                               +   +F +  + +     +I G+GT  A +I+ A  D  F 
Sbjct: 1341 LALEMCERGYHFKKVDLYRSSATEFIIDGDGLIPPFNSIPGLGTNVALNIVRARQDGEFL 1400

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            S ED   R    K+++ +LE L   G L+  
Sbjct: 1401 SKEDLQKR---GKVSKTILEYLDRQGCLEAL 1428



 Score = 68.5 bits (166), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++    +  ++++       AIA+TD   + S  +    +    I+ + 
Sbjct: 335 VELHLHSPMSQMDAVTGIGKLVEQAKKWGHEAIALTDHAVVQSFPDAYAASKKHDIKMMY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G ++++         N           +V  V T
Sbjct: 395 GVEINLVDDGVPIAYNPEHRLLEDATYVVFDVET 428


>gi|169344095|ref|ZP_02865081.1| DNA polymerase III subunit alpha [Clostridium perfringens C str.
            JGS1495]
 gi|169297830|gb|EDS79927.1| DNA polymerase III subunit alpha [Clostridium perfringens C str.
            JGS1495]
          Length = 610

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 161/489 (32%), Positives = 256/489 (52%), Gaps = 37/489 (7%)

Query: 582  LQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++ ++D +   RGV++DL  + FDD E Y ++    T+G+FQLES+GM   ++ ++PDC+
Sbjct: 1    MRDAVDMIKYNRGVEIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCL 60

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            EDIIA +SLYRPGP+  I  Y + K   + +  I P ++ +L  T GV++YQEQVM+I +
Sbjct: 61   EDIIAGISLYRPGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVR 120

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVN 748
             L+GYS+  +D++RRAM KK  + M+++++ FI             G  +NGIS   A  
Sbjct: 121  KLAGYSMGRSDLVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANK 180

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            IF+ +  FA Y FNKSHAAAYAVI +QTA++  +YPVEFLAA +   M N +K+ ++ + 
Sbjct: 181  IFDSMMDFASYAFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRS 240

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLED 867
            A +  IQ++PP +N     F V  + I + + AIK VG     +I ++      F SL D
Sbjct: 241  AEKLGIQVLPPDINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGRFTSLMD 300

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            FC+++D   +N+R +ESL+ AG  D     R QLL   + I        K   +   ++F
Sbjct: 301  FCNKIDLSIVNKRSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLF 360

Query: 928  AH--EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                E+   + +I        N       E+ + G Y SGHPLD Y+  L++      E+
Sbjct: 361  GALQEESESNLEIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTSITIEK 420

Query: 986  SVA---------------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             +                         G  + +  ++ +  +K TR  + + +    +  
Sbjct: 421  IIEAQKNLNEQKNVELEDLVLDSSLTDGTRVVIGGILTNVSRKVTRNNTLMAFAKVEDLT 480

Query: 1025 KEYEANFFP 1033
               E   FP
Sbjct: 481  GYLECVIFP 489


>gi|20807845|ref|NP_623016.1| DNA polymerase III PolC [Thermoanaerobacter tengcongensis MB4]
 gi|24418364|sp|Q8RA32|DPO3_THETN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|20516408|gb|AAM24620.1| DNA polymerase III alpha subunit, the Gram-positive type
            [Thermoanaerobacter tengcongensis MB4]
          Length = 1401

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 182/933 (19%), Positives = 339/933 (36%), Gaps = 178/933 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  +K    GI+ +          +++ M  +       V  + +LV   +G + L E+
Sbjct: 544  IKMLEKLQEIGIKSVSEI-------NSVLMEREVDVKKLPVYHVTILVKDQKGLRNLYEI 596

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            +SR  L +   ++ RI  S L ++  EGLI+ +    G + RA   N  +   + ++ F 
Sbjct: 597  ISRSNL-EFFHRTPRIPKSLLVKM-REGLIIGSACEQGEVFRALVSNLEEKKLEDIINFY 654

Query: 175  -----KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                 + +  +   +     R  +  +E   ++ +L   +   +VAT +  FL   D   
Sbjct: 655  DYLEIQPVGNNEFLIERGEVRSVEELKEINRKIYELGKKYNKLVVATGDVHFLDPWDDVY 714

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFIL 285
              +LMA          DR    P  Y +   EM+  F  L E  A E  +E   + + I+
Sbjct: 715  RKILMA---GKGYKDADR---QPPLYFRTTEEMLMEFEYLGEEAAREVVIENPNKIAEIV 768

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            +   PI     E     + +  E ELR   +                     ++RLD EL
Sbjct: 769  EDVKPI----PEGTFPPVIEGAEEELRRITLEKAHEIYGD------PLPPIVQERLDREL 818

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------ 399
            N I    ++  ++I    +  + ++   VG  RGS   S+ A    IT+++PL       
Sbjct: 819  NAIINNGYAVMYVIAQKLVSKSLQDGYLVG-SRGSVGSSLVATMSGITEVNPLPPHYVCP 877

Query: 400  -----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQ 424
                                               F + FE F+  +    PD D++F  
Sbjct: 878  KCKHSEFVTDGSFGCGVDMPDKYCPNCGTLMKKDGFDIPFEVFMGFEGDKEPDIDLNFSG 937

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + +    RY +  +G   V +  T G+L  K A   V +                     
Sbjct: 938  EYQPIAHRYTEELFGKGHVFRAGTIGTLADKTAYGYVKKYF------------------- 978

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQL 542
                          R   +    + RL   +    G+ R    H  G+++  +   +   
Sbjct: 979  ------------EERNLTVHKSEIKRL---TMGCTGIKRTTGQHPGGVMVVPKDKSIYDF 1023

Query: 543  VPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             P+ R      +D+  T F+   +    L+K D LG    T+++   D            
Sbjct: 1024 TPIQRPADAEDTDVITTHFDYHSL-SGKLLKLDILGHDDPTVIRMLEDLTGVNAR----- 1077

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +T  L T+   LGI   E  G      G+     + +  ++   RP   D +V
Sbjct: 1078 KIPLDDKKTMSLFTSVEALGIDPEEL-GTPVGTLGLPEFGTKFVRQMLIETRPTTFDELV 1136

Query: 660  VYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRR 715
              +   +G +  ++    +I   +   + VI  ++ +M       +    S    + +R+
Sbjct: 1137 RISGLSHGTDVWLNNAQDIIREGIATLKEVIAARDDIMLYLISKGMDKKLSFKIMENVRK 1196

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
              G   +EE+++ K        K+G+      +  ++      Y F K+HA AY +++++
Sbjct: 1197 GKG-VTQEEIEEMK--------KHGVPDWFIQSCQKI-----KYMFPKAHAVAYVIMAFR 1242

Query: 776  TAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQDARQFNIQIMPPSVN---- 822
             A+ K +YP  F A   T+  D+          E IK+  ++         P   N    
Sbjct: 1243 IAYFKVYYPEAFYATYFTVRADDFNLDIVLGGKESIKRAIKEIEAKGNNATPKEKNLLTV 1302

Query: 823  ---------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
                                 +    F + +  +   L +++GVG   A+ I +   +  
Sbjct: 1303 LEVALEMYLRGIKFTNVDLYRSDAEKFLITEEGLLPPLNSLEGVGIQAAKAIAQERENGK 1362

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            F S+EDF +R    ++++ V+E L   G L+  
Sbjct: 1363 FISIEDFRNRT---RVSKTVIEILKQYGCLEDL 1392



 Score = 74.2 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 31/66 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S L+   S   ++ + A     A+AITD   + +  E  + +   G++ I 
Sbjct: 303 VELHLHTQMSTLDAVPSATEVIKRAAEWGHKAVAITDHAVVQAFPEAMEASREYGVKVIY 362

Query: 72  GCQLDI 77
           G +  +
Sbjct: 363 GMEGYM 368


>gi|304316867|ref|YP_003852012.1| DNA polymerase III subunit alpha [Thermoanaerobacterium
            thermosaccharolyticum DSM 571]
 gi|302778369|gb|ADL68928.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
            thermosaccharolyticum DSM 571]
          Length = 1410

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 174/932 (18%), Positives = 318/932 (34%), Gaps = 201/932 (21%)

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
             K    GI+ +              + N+          +++LV   +G + L ELVS+ 
Sbjct: 559  NKLKENGIEKVNEINSY--------LKNKVDIKKMPTYHVIILVKNQKGLRNLYELVSKS 610

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF----- 174
             L +   ++ RI  S L ++  EGL++ +    G + R    N      + ++ +     
Sbjct: 611  NL-EYFHRNPRIPKSLLTQM-REGLLIGSACEQGEVFRGLISNFDDDKLQEIIRYYDYLE 668

Query: 175  -KKLFGDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             + L  +   ++       +       ++ +L    + P+VAT +  FL   D     +L
Sbjct: 669  IQPLGNNEFLIDKGEVNSKEELIKINKRIYELGKRFKKPVVATCDVHFLDPWDDVYRKIL 728

Query: 232  MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHA 289
            M   +       DR    P  Y +   EM+S F+   E  A E  ++   +   +++   
Sbjct: 729  M---YGKGFKDADR---QPPLYFRTTEEMLSEFNYFDEKTAKEIVIDNPNKIVELIEDVK 782

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
            PI         +      E ELR   +        +         +   +RLD ELN I 
Sbjct: 783  PIPDGTFPPSIEGA----EEELRKLTLNKAHEIYGEKL------PEIVEKRLDKELNSII 832

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------- 399
               ++  ++I    +  +  +   VG  RGS   S  A    IT+++PL           
Sbjct: 833  NNGYAVMYIIAQKLVTKSLNDGYLVG-SRGSVGSSFVATMSGITEVNPLPPHYICPQCKY 891

Query: 400  -------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                                             + FE FL  +    PD D++F  D + 
Sbjct: 892  SEFALDGSYGSGVDMPDKNCPNCGTKMKKDGHDIPFEVFLGFEGDKEPDIDLNFSGDYQP 951

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
               +Y +  +G   V +  T G+L  K A   V +                         
Sbjct: 952  IAHKYTEEIFGTGHVFRAGTIGTLADKTAYGFVKKYF----------------------- 988

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG--DRPLSQLVPMY 546
                      +   + +  + RL+       G  R    H  G+++   DR + +  P+ 
Sbjct: 989  --------EEKNLLVHNAEIKRLV---MGCTGAKRTTGQHPGGVMVVPKDRDIYEFTPIQ 1037

Query: 547  RDV---RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
                   SD+  T F+   I    L+K D LG    T+++   D             IP 
Sbjct: 1038 HPADAQDSDIITTHFDYHSI-SGRLLKLDILGHDDPTVIRMLEDLTGVNAR-----EIPL 1091

Query: 604  DDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            DD ET  L                T GTLG+ +  +  +RQ L   +P    +++ +  L
Sbjct: 1092 DDKETMSLFTSVDALNIKPEDINCTVGTLGLPEFGTRFVRQMLVDTKPTTFAELVRISGL 1151

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYS 706
                   ++ + N +            +I       + VI  ++ +M       +    S
Sbjct: 1152 SHGT---DVWLNNAQ-----------DIIKEGKATLKEVISTRDDIMLFLISKGMDKKLS 1197

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
                + +R+  G K +E  +              + K    + F    K   Y F K+HA
Sbjct: 1198 FKIMESVRKGKGIKDEEIEE--------------MKKHDVPDWFIQSCKKIKYMFPKAHA 1243

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLE--------MDNVEKIKKFCQ----------- 807
             AY +++++ A+ K HYP  F A   T+         M+++EKIK+  +           
Sbjct: 1244 VAYVIMAFRIAYFKVHYPEAFYATYFTVRADEFNLDIMNSIEKIKENIRLIESKGNNATA 1303

Query: 808  -------------DARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
                         +     ++        +  + F +  + I   L +++G+G   A+ I
Sbjct: 1304 KEKGLLTILEVGLEMYLRGLKFTDVDLYKSDAIKFLITKDGILPPLNSLEGIGKQAAKII 1363

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             E   +  F S+ED  +R    K    +L+  
Sbjct: 1364 AEERKNGKFLSIEDLRNRTRISKTVIDILKQH 1395



 Score = 84.6 bits (208), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH+  S ++G  S  +++ + +     AIAITD   L +  E    A   G++ I 
Sbjct: 314 VELHVHTQMSSMDGVSSAESLIKRASEWGHKAIAITDHAVLQAYPEAQSAAKKYGVKVIY 373

Query: 72  GC 73
           G 
Sbjct: 374 GV 375


>gi|297530567|ref|YP_003671842.1| DNA polymerase III subunit alpha [Geobacillus sp. C56-T3]
 gi|297253819|gb|ADI27265.1| DNA polymerase III, alpha subunit [Geobacillus sp. C56-T3]
          Length = 1444

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 178/954 (18%), Positives = 325/954 (34%), Gaps = 200/954 (20%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             +   ++A   GI            + N +  ++          + LL     G + L +
Sbjct: 585  LMRLLKEAEERGI--------LFHDELNSRTHSEASYRLARPFHVTLLAQNETGLKNLFK 636

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L +   +GL++ +G   G +       + +  E     +
Sbjct: 637  LVSLSHI-QYFHRVPRIPRSVLVK-HRDGLLVGSGCDKGELFDNLIQKAPEEVEDIARFY 694

Query: 175  K--KLFGDRLY---VNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               ++    +Y   + +   +  +  +     +V L    ++P+VAT N  +L+ ED   
Sbjct: 695  DFLEVHPPDVYKPLIEMDYVKDEEMIKNIIRSIVALGEKLDIPVVATGNVHYLNPEDKIY 754

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFIL 285
              +L+        +        PD Y +  +EM+  FS L   +A E  V+  ++ + ++
Sbjct: 755  RKILIHSQGG---ANPLNRHELPDVYFRTTNEMLDCFSFLGPEKAKEIVVDNTQKIASLI 811

Query: 286  QVHAPILPRFIEKECDDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                PI         +   +E  E +  R K + G                +   +RL+ 
Sbjct: 812  GDVKPIKDELYTPRIEGADEEIREMSYRRAKEIYG------------DPLPKLVEERLEK 859

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            EL  I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL     
Sbjct: 860  ELKSIIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYV 918

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                   + FE FL      +PD D++F
Sbjct: 919  CPNCKHSEFFNDGSVGSGFDLPDKNCPRCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNF 978

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              + +     Y +  +G + V +  T G++  K A   V                     
Sbjct: 979  SGEYQPRAHNYTKVLFGEDNVYRAGTIGTVADKTAYGFV--------------------- 1017

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLS 540
                   +A A D       L    +DRL   +    G+ R    H  GI++      + 
Sbjct: 1018 -------KAYASDHNLE---LRGAEIDRL---AAGCTGVKRTTGQHPGGIIVVPDYMEIY 1064

Query: 541  QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+     D  S+   T F+   I    L+K D LG    T+++   D        +D
Sbjct: 1065 DFTPIQYPADDTSSEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----ID 1118

Query: 598  LSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDI 643
               IP DD +   + ++               GT+GI +  +  +RQ LE  +P    ++
Sbjct: 1119 PKTIPTDDPDVMGIFSSTEPLGVTPEQIMCNVGTIGIPEFGTRFVRQMLEETRPKTFSEL 1178

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            + +  L     +                 +   LI         VI  ++ +M +  +  
Sbjct: 1179 VQISGLSHGTDVWLG--------------NAQELIQNGTCTLSEVIGCRDDIM-VYLIYR 1223

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G   S A  +  ++ K      + + E       +  I             K   Y F K
Sbjct: 1224 GLEPSLAFKIMESVRKGKGLTPEFEAEMRKHDVPEWYID----------SCKKIKYMFPK 1273

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNI 814
            +HAAAY +++ + A+ K H+P+ + A+  T+  ++ +          I+K  ++     I
Sbjct: 1274 AHAAAYVLMAVRIAYFKVHHPLLYYASYFTVRAEDFDLDAMIKGSAAIRKRIEEINAKGI 1333

Query: 815  QIMPPS-------------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            Q                                +   +F +  N +     AI G+GT  
Sbjct: 1334 QATAKEKSLLTVLEVALEMCERGFSFKNIDLYRSQATEFVIDGNSLIPPFNAIPGLGTNV 1393

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL 902
            A+ I+ A  +  F S ED   R    K     LES    G LD    ++++ L 
Sbjct: 1394 AQAIVRAREEGEFLSKEDLQQRGKLSKTLLEYLES---RGCLDSLPDHNQLSLF 1444



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+  ++++      PAIA+TD   + S  E    A   G++ I 
Sbjct: 343 VELHLHTPMSQMDAVTSVTKLIEQAKKWGHPAIAVTDHAVVQSFPEAYSAAKKHGMKVIY 402

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 403 GLEANIVDDGVPIAYNETHRRLADETYVVFDVET 436


>gi|289578391|ref|YP_003477018.1| DNA polymerase III subunit alpha [Thermoanaerobacter italicus Ab9]
 gi|289528104|gb|ADD02456.1| DNA polymerase III, alpha subunit [Thermoanaerobacter italicus Ab9]
          Length = 1406

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 177/926 (19%), Positives = 329/926 (35%), Gaps = 178/926 (19%)

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G++ +          +++   ++       V  + +LV    G + L E++S+  L 
Sbjct: 556  KELGVKKVKDI-------NDILRESEVDIKKLPVYHVTILVKDQRGLRNLYEIISKSNL- 607

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KK 176
            +   ++ RI  S L  +  EGLI+ +    G + RA   N  +   + +++F      + 
Sbjct: 608  EYFHRTPRIPKSLLISM-REGLIIGSACEQGEVFRAILSNLEEKKLENIISFYDYLEVQP 666

Query: 177  LFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            +  +   +     +  +  +E   ++  L   +   +VAT +  FL   D     +LMA 
Sbjct: 667  VGNNEFLIEKGEVKSVEELKEINRRIYLLGKKYNKLVVATGDVHFLDPWDDIYRKILMA- 725

Query: 235  AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPIL 292
                     DR    P  Y K   EM+  F  L E  A E  ++   + + +++   PI 
Sbjct: 726  --GKGYKDADR---QPPLYFKTTDEMLKEFEYLGEEVAKEIVIDNPNKIADLIEEVKPI- 779

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
                +     + +  E ELR   +                  +  + RLD ELN I    
Sbjct: 780  ---PDGTFPPVIEGAEEELRKLTLDKAHEIYGD------PLPEIVQNRLDRELNSIINNG 830

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------- 399
            ++  ++I    +  + K+   VG  RGS   S+ A    IT+++PL              
Sbjct: 831  YAVMYIIAQKLVSKSLKDGYLVG-SRGSVGSSLVATMSGITEVNPLPPHYVCPNCKYSEF 889

Query: 400  ----------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
                                        F + FE FL  +    PD D++F  + +    
Sbjct: 890  ITDGSYGCGVDMPDKICPHCGTLMKKDGFDIPFEVFLGFEGDKEPDIDLNFSGEYQPIAH 949

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +Y +  +G   V +  T G+L  K A   V +                            
Sbjct: 950  KYTEELFGKGHVFRAGTIGTLADKTAYGFVKKYF-------------------------- 983

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDV 549
                   R   +    + RL   +    G+ R    H  GI++  +   +    P+    
Sbjct: 984  -----EERSLVVHKSEIKRL---TMGCTGVKRTTGQHPGGIMVVPKDKSIYDFTPIQHPA 1035

Query: 550  R---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                +D+  T F+   I    L+K D LG    T+++   D             IP DD 
Sbjct: 1036 DAEDTDVITTHFDYHSI-SGRLLKLDILGHDDPTVIRMLEDLTGVNAR-----EIPLDDK 1089

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L T+   LGI   E +       G+     + +  ++   RP     +V  +   +
Sbjct: 1090 KTMSLFTSVEALGIDPEELN-TPVGTLGLPEFGTKFVRQMLIETRPTTFAELVRISGLSH 1148

Query: 667  GKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIK 722
            G +  ++    +I   +   + VI  ++ +M       +    S    + +R+  G    
Sbjct: 1149 GTDVWLNNAQDIIREGIATLKEVISTRDDIMLYLISKGMDKKLSFKIMENVRKGKG-VTP 1207

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EE+++ K        K+G+      +  ++      Y F K+HA AY +++++ A+ K H
Sbjct: 1208 EEIEEMK--------KHGVPNWFIESCQKI-----KYMFPKAHAVAYVIMAFRIAYFKVH 1254

Query: 783  YPVEFLAASMTLEMDNV---------EKIKKFCQDARQFNIQIMPPS------------- 820
            YP  F A   T+  D+          + IK   ++         P               
Sbjct: 1255 YPEAFYATYFTVRADDFNLDIVLKGRDSIKNAIKEIEAKGNNASPKEKSLLTVLEVALEM 1314

Query: 821  ------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
                          +  V F + +  I   L +++GVG   A+ I +   +  F S+EDF
Sbjct: 1315 YLRGFKFINVDLYKSDAVKFLITNEGILPPLNSLEGVGIQAAKTIAQERENGKFLSVEDF 1374

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCF 894
             +R    K+++ V+E L   G L+  
Sbjct: 1375 RNRT---KVSKTVIEILRKYGCLNDL 1397



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S   ++ + A     AIAITD   + +  E  + +   G++ I 
Sbjct: 308 VELHLHTQMSSMDAVASATEVIKRAAKWGHKAIAITDHAVVQAYPEAMEASYKYGVKVIY 367

Query: 72  GC 73
           G 
Sbjct: 368 GV 369


>gi|251779220|ref|ZP_04822140.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum E1 str. 'BoNT E Beluga']
 gi|243083535|gb|EES49425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum E1 str. 'BoNT E Beluga']
          Length = 1452

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 174/899 (19%), Positives = 320/899 (35%), Gaps = 165/899 (18%)

Query: 90   KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
                     I++L  T  G + L +L+S+ ++ D   +  R   + L E   EGLI+ + 
Sbjct: 622  DIRKQPTYHIIILAKTQAGLKNLYKLISKSHI-DNFFRRPRTPKTLLSEF-REGLIIGSA 679

Query: 150  GSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVV 201
              +G + +A     S    K ++ F      + +  +   +     +  +  RE   ++ 
Sbjct: 680  CEAGEVYKAVLEGRSDDEIKEIIEFYDYVEIQPIANNNFLIAKGSVKDEEELREINRKIY 739

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +L      P VAT +  FL+  D     ++MA    +           P  YLK   EM+
Sbjct: 740  RLGKECNKPTVATGDVHFLNPNDEAFRKIIMAGQGFSDADN------QPPLYLKTTEEML 793

Query: 262  SIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
              FS L +  A E  ++  ++ S  + V  PI       + +  +++ +N   NKA A  
Sbjct: 794  KEFSYLGKDIAKEVVIDNPKKISDSIGVLKPIPDETYPPKIEGAEEDIKNMTLNKAHA-- 851

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                    I      +  ++RLD ELN I    ++  +LI    +  + ++   VG  RG
Sbjct: 852  --------IYGEVLPEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSTEDGYLVG-SRG 902

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S  A    IT+++ L                                         
Sbjct: 903  SVGSSFVATMSDITEVNGLPPHYVCPKCKKSEFFLDGSISSGADLPNKNCPHCDVPYIKD 962

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               + FE FL  +    PD D++F  + +  V RY +  +G     +  T G++  K A 
Sbjct: 963  GHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHRYTEVLFGKGHTFKAGTIGTIAEKTAY 1022

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V + L                                 RE   +   ++RL   +   
Sbjct: 1023 GYVKKYLDE-------------------------------REIITSSAEIERL---TLGC 1048

Query: 519  EGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDF 573
             G+ R    H  GI++   D  +    P+         D+  T F+   I    L+K D 
Sbjct: 1049 TGIKRTTGQHPGGIMVVPADNEIYNFCPIQHPADDNDTDVVTTHFDYHSI-SGRLLKLDI 1107

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            LG    T+L+   D        +D   IP +D +   L T+   LG+ + E         
Sbjct: 1108 LGHDDPTVLRMLQDLTG-----LDPKTIPLNDEKVLSLFTSPEALGVTKEELE-CEVGSY 1161

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQ 692
            G+     + +  ++   +P    ++V  +   +G +  ++     I       +  I  +
Sbjct: 1162 GLPEFGTKFVRGMLVDTQPKTFADLVRISGLSHGTDVWLNNAQYYIKEGFTTLRDCIATR 1221

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            + +M +  +  G     A  +   + K      D +K           + +      +  
Sbjct: 1222 DDIM-VYLMYKGLPPKSAFTIMEKVRKGKGLSEDDEKL----------MKEHEVPEWYIG 1270

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------ 800
              K   Y F K HA AY +++ + A+ K +YP  + A   T+  D+ +            
Sbjct: 1271 SCKKIKYMFPKGHAVAYVMMAVRIAYYKVYYPEAYYATYFTVRADDFDANLVCLGDGAVH 1330

Query: 801  -KIKKFCQ--------------------DARQFNIQIMPPS-VNTPCVDFKVGDNRIYYS 838
             K+++  +                    +A +  ++ +      +  V FK+ D  +   
Sbjct: 1331 TKLQELYELGNNASVKDKGLITVLELCFEAYKRGVKFLRVDLYKSEGVKFKIEDGALRLP 1390

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L ++ GV    A++I+EA     F S ED   R     +++ V+ESL   G LD    +
Sbjct: 1391 LNSLPGVADNAAKNIVEARVKGEFISKEDLRIRA---GVSKTVIESLSNHGCLDGLSET 1446



 Score = 71.9 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L +H++ S ++G  S + I++  A     AIAITD   + +  E    +    I+ + 
Sbjct: 354 IELHLHTNMSSMDGITSASKIIETAAKWGHEAIAITDHGVVQAYPEAQLASKKNKIKILY 413

Query: 72  GC 73
           G 
Sbjct: 414 GV 415


>gi|188589600|ref|YP_001920613.1| DNA polymerase III PolC [Clostridium botulinum E3 str. Alaska E43]
 gi|188499881|gb|ACD53017.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum E3 str. Alaska E43]
          Length = 1452

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 174/899 (19%), Positives = 320/899 (35%), Gaps = 165/899 (18%)

Query: 90   KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
                     I++L  T  G + L +L+S+ ++ D   +  R   + L E   EGLI+ + 
Sbjct: 622  DIRKQPTYHIIILAKTQAGLKNLYKLISKSHI-DNFFRRPRTPKTLLSEF-REGLIIGSA 679

Query: 150  GSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVV 201
              +G + +A     S    K ++ F      + +  +   +     +  +  RE   ++ 
Sbjct: 680  CEAGEVYKAVLEGRSDDEIKEIIEFYDYVEIQPIANNNFLIAKGSVKDEEELREINRKIY 739

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +L      P VAT +  FL+  D     ++MA    +           P  YLK   EM+
Sbjct: 740  RLGKECNKPTVATGDVHFLNPNDEAFRKIIMAGQGFSDADN------QPPLYLKTTEEML 793

Query: 262  SIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
              FS L +  A E  ++  ++ S  + V  PI       + +  +++ +N   NKA A  
Sbjct: 794  KEFSYLGKDIAKEVVIDNPKKISDSIGVLKPIPDETYPPKIEGAEEDIKNMTLNKAHA-- 851

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                    I      +  ++RLD ELN I    ++  +LI    +  + ++   VG  RG
Sbjct: 852  --------IYGEVLPEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSTEDGYLVG-SRG 902

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S  A    IT+++ L                                         
Sbjct: 903  SVGSSFVATMSDITEVNGLPPHYVCPKCKKSEFFLDGSISSGADLPDKNCPHCDVPYIKD 962

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               + FE FL  +    PD D++F  + +  V RY +  +G     +  T G++  K A 
Sbjct: 963  GHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHRYTEVLFGKGHTFKAGTIGTIAEKTAY 1022

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V + L                                 RE   +   ++RL   +   
Sbjct: 1023 GYVKKYLDE-------------------------------REIITSSAEIERL---TLGC 1048

Query: 519  EGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDF 573
             G+ R    H  GI++   D  +    P+         D+  T F+   I    L+K D 
Sbjct: 1049 TGIKRTTGQHPGGIMVVPADNEIYNFCPIQHPADDNDTDVVTTHFDYHSI-SGRLLKLDI 1107

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            LG    T+L+   D        +D   IP +D +   L T+   LG+ + E         
Sbjct: 1108 LGHDDPTVLRMLQDLTG-----LDPKTIPLNDEKVLSLFTSPEALGVTKEELE-CEVGSY 1161

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQ 692
            G+     + +  ++   +P    ++V  +   +G +  ++     I       +  I  +
Sbjct: 1162 GLPEFGTKFVRGMLVDTQPKTFADLVRISGLSHGTDVWLNNAQYYIKEGFTTLRDCIATR 1221

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            + +M +  +  G     A  +   + K      D +K           + +      +  
Sbjct: 1222 DDIM-VYLMYKGLPPKSAFTIMEKVRKGKGLSEDDEKL----------MKEHEVPEWYIG 1270

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------ 800
              K   Y F K HA AY +++ + A+ K +YP  + A   T+  D+ +            
Sbjct: 1271 SCKKIKYMFPKGHAVAYVMMAVRIAYYKVYYPEAYYATYFTVRADDFDANLVCLGDGAVH 1330

Query: 801  -KIKKFCQ--------------------DARQFNIQIMPPS-VNTPCVDFKVGDNRIYYS 838
             K+++  +                    +A +  ++ +      +  V FK+ D  +   
Sbjct: 1331 TKLQELYELGNNASVKDKGLITVLELCFEAYKRGVKFLRVDLYKSEGVKFKIEDGALRLP 1390

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L ++ GV    A++I+EA     F S ED   R     +++ V+ESL   G LD    +
Sbjct: 1391 LNSLPGVADNAAKNIVEARVKGEFISKEDLRIRA---GVSKTVIESLSNHGCLDGLSET 1446



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L +H++ S ++G  S + +++  A     AIAITD   + +  E    +    I+ + 
Sbjct: 354 IELHLHTNMSSMDGITSASKMIETAAKWGHEAIAITDHGVVQAYPEAQLASKKNKIKILY 413

Query: 72  GC 73
           G 
Sbjct: 414 GV 415


>gi|229086370|ref|ZP_04218547.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
 gi|228696982|gb|EEL49790.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
          Length = 1433

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 180/943 (19%), Positives = 324/943 (34%), Gaps = 194/943 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHVTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EGLI+ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGLIVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILISSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLDCFSFLGEEKAKEIVVTNTQKVASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYEMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVS---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        VD   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGVDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE +++            +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEEE------------MRNNNVPGWYIESCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   DF +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDTLIPPFNAVPGLGTNAAVSIVEARENG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLL 902
             F S ED   R    K+++ ++E L   G L D    +++ L 
Sbjct: 1394 EFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDLPDKNQLSLF 1433



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AGI+ I 
Sbjct: 332 VELHLHTPMSQMDAVTGVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGIKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNESHRLLEDETYVVFDVET 425


>gi|297544667|ref|YP_003676969.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
            subsp. mathranii str. A3]
 gi|296842442|gb|ADH60958.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
            subsp. mathranii str. A3]
          Length = 1406

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 177/926 (19%), Positives = 329/926 (35%), Gaps = 178/926 (19%)

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G++ +          +++   ++       V  + +LV    G + L E++S+  L 
Sbjct: 556  KELGVKKVKDI-------NDILRESEVDIKKLPVYHVTILVKDQRGLRNLYEIISKSNL- 607

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KK 176
            +   ++ RI  S L  +  EGLI+ +    G + RA   N  +   + +++F      + 
Sbjct: 608  EYFHRTPRIPKSLLISM-REGLIIGSACEQGEVFRAILSNLEEKKLENIISFYDYLEVQP 666

Query: 177  LFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            +  +   +     +  +  +E   ++  L   +   +VAT +  FL   D     +LMA 
Sbjct: 667  VGNNEFLIEKGEIKSVEELKEINRRIYLLGKKYNKLVVATGDVHFLDPWDDIYRKILMA- 725

Query: 235  AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPIL 292
                     DR    P  Y K   EM+  F  L E  A E  ++   + + +++   PI 
Sbjct: 726  --GKGYKDADR---QPPLYFKTTDEMLKEFEYLGEEVAKEIVIDNPNKIADLIEEVKPI- 779

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
                +     + +  E ELR   +                  +  + RLD ELN I    
Sbjct: 780  ---PDGTFPPVIEGAEEELRKLTLDKAHEIYGD------PLPEIVQNRLDRELNSIINNG 830

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------- 399
            ++  ++I    +  + K+   VG  RGS   S+ A    IT+++PL              
Sbjct: 831  YAVMYIIAQKLVSKSLKDGYLVG-SRGSVGSSLVATMSGITEVNPLPPHYVCPNCKYSEF 889

Query: 400  ----------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
                                        F + FE FL  +    PD D++F  + +    
Sbjct: 890  ITDGSYGCGVDMPDKICPHCGTLMKKDGFDIPFEVFLGFEGDKEPDIDLNFSGEYQPIAH 949

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +Y +  +G   V +  T G+L  K A   V +                            
Sbjct: 950  KYTEELFGKGHVFRAGTIGTLADKTAYGFVKKYF-------------------------- 983

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDV 549
                   R   +    + RL   +    G+ R    H  GI++  +   +    P+    
Sbjct: 984  -----EERSLVVHKSEIKRL---TMGCTGVKRTTGQHPGGIMVVPKDKSIYDFTPIQHPA 1035

Query: 550  R---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                +D+  T F+   I    L+K D LG    T+++   D             IP DD 
Sbjct: 1036 DAEDTDVITTHFDYHSI-SGRLLKLDILGHDDPTVIRMLEDLTGVNAR-----EIPLDDK 1089

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L T+   LGI   E +       G+     + +  ++   RP     +V  +   +
Sbjct: 1090 KTMSLFTSVEALGIDPEELN-TPVGTLGLPEFGTKFVRQMLIETRPTTFAELVRISGLSH 1148

Query: 667  GKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIK 722
            G +  ++    +I   +   + VI  ++ +M       +    S    + +R+  G    
Sbjct: 1149 GTDVWLNNAQDIIREGIATLKEVISTRDDIMLYLISKGMDKKLSFKIMENVRKGKG-VTP 1207

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EE+++ K        K+G+      +  ++      Y F K+HA AY +++++ A+ K H
Sbjct: 1208 EEIEEMK--------KHGVPNWFIESCQKI-----KYMFPKAHAVAYVIMAFRIAYFKVH 1254

Query: 783  YPVEFLAASMTLEMDNV---------EKIKKFCQDARQFNIQIMPPS------------- 820
            YP  F A   T+  D+          + IK   ++         P               
Sbjct: 1255 YPEAFYATYFTVRADDFNLDIVLKGRDSIKNAIKEIEAKGNNASPKEKSLLTVLEVALEM 1314

Query: 821  ------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
                          +  V F + +  I   L +++GVG   A+ I +   +  F S+EDF
Sbjct: 1315 YLRGFKFINVDLYKSDAVKFLITNEGILPPLNSLEGVGIQAAKTIAQERENGKFLSVEDF 1374

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCF 894
             +R    K+++ V+E L   G L+  
Sbjct: 1375 RNRT---KVSKTVIEILRKYGCLNDL 1397



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S   ++ + A     AIAITD   + +  E  + +   G++ I 
Sbjct: 308 VELHLHTQMSSMDAVASATEVIKRAAKWGHKAIAITDHAVVQAYPEAMEASYKYGVKVIY 367

Query: 72  GC 73
           G 
Sbjct: 368 GV 369


>gi|319645959|ref|ZP_08000189.1| PolC protein [Bacillus sp. BT1B_CT2]
 gi|317391709|gb|EFV72506.1| PolC protein [Bacillus sp. BT1B_CT2]
          Length = 1463

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 168/924 (18%), Positives = 323/924 (34%), Gaps = 166/924 (17%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             ++  + A    I           + +N+  +N  +   P      LL     G + L +
Sbjct: 579  LVKMLKDAAEKNI------LYHDQLNENMGQSNAYQRSRP--YHATLLAVNETGLKNLFK 630

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 631  LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDKGEVFEGMMQKSPEEVEDIASFY 688

Query: 175  K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               ++    +Y     + L R     +   + + +L     +P+VAT N  +L+ ED   
Sbjct: 689  DYLEVMPPEVYRHLLQLELVRDEKALKEIIANITKLGEKLNIPVVATGNVHYLNPEDKIY 748

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFIL 285
              +L++       +        P+ + ++  EM+  FS L E  A E  V+  R  S  +
Sbjct: 749  RKILVSSQGG---ANPLNRHELPNVHFRSTDEMLEAFSFLGEEKAKEIVVKNTRMISERI 805

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            +   PI       + +      ++E+R  +         +         +   +R++ EL
Sbjct: 806  EEIKPIKDDLYTPKIEGA----DDEIRRMSYEKARSIYGEDL------PEIVEKRIEKEL 855

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------ 399
              I    F+  +LI    ++ +  +   VG  RGS   S+ A    IT+++PL       
Sbjct: 856  KSIIGHGFAVIYLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLPPHYVCP 914

Query: 400  -----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQ 424
                                                 + FE FL      +PD D++F  
Sbjct: 915  DCRHSEFFNDGSVGSGFDLPDKDCPKCGAAYRKDGHDIPFETFLGFKGDKVPDIDLNFSG 974

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + +     Y +  +G + V +  T G++  K A   V                       
Sbjct: 975  EYQPHAHNYTKVLFGEDNVYRAGTIGTVAEKTAYGYV----------------------- 1011

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQL 542
                 +  A+D+      +    +DRL+   Q   G+ R    H  GI++      +   
Sbjct: 1012 -----KGYANDNNL---HMRGAEIDRLV---QGCTGVKRTTGQHPGGIIVVPDYMDIYDF 1060

Query: 543  VPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             P+        S+   T F+   I    L+K D LG    T+++   D        +D  
Sbjct: 1061 SPIQFPADATDSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPK 1114

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD E   +     +LG+ + E  G +    G+       +  ++   +P     +V
Sbjct: 1115 TIPTDDPEVMKIFQGTESLGVTE-EQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELV 1173

Query: 660  VYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   +G +  + +   LI   + E   VI  ++ +M +  +  G   S A  +   + 
Sbjct: 1174 QISGLSHGTDVWLGNAQELIHNNICELSEVIGCRDDIM-VYLIYQGLEPSLAFKIMEFVR 1232

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K      + ++E          +      + +    K   Y F K+HAAAY +++ + A+
Sbjct: 1233 KGKGLTPEWEEE----------MKNNNVPDWYIDSCKKIKYMFPKAHAAAYVLMAVRIAY 1282

Query: 779  MKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS--------- 820
             K H+P+ + AA  T+  D+ +          I+    D     +   P           
Sbjct: 1283 FKVHHPLLYYAAYFTVRADDFDIETMIKGSTAIRAVMDDINSKGLDASPKEKSLLTVLEL 1342

Query: 821  ----------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
                              +   +F +  N +     +I G+GT  A +I++A  +  F S
Sbjct: 1343 ALEMCERGFSFQKVDLYRSSASEFIIDGNSLIPPFNSIPGLGTNAALNIVKAREEGEFLS 1402

Query: 865  LEDFCSRVDSKKLNRRVLESLVFA 888
             ED   +    K +  +L +   +
Sbjct: 1403 KEDLQKKRKGVKNDHGILGAPRLS 1426



 Score = 76.2 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 60/177 (33%), Gaps = 10/177 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++   S+  ++++      PAIA+TD   + S  +    +   G++ I 
Sbjct: 336 VELHLHSPMSQMDAVSSIGKLVEQAKKWGHPAIALTDHAVVQSFPDAFAASKKHGVKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G + ++         N           +V  V T  G   + + +  +  +      +  
Sbjct: 396 GLEANLVDDGVPIAYNPVHRLLEEETYVVFDVET-TGLSAVYDTIIELAAVKVKGGEIIE 454

Query: 132 CLSWLQEIGTEG---LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                          +I LTG              +   E+ +  FK+  GD   V 
Sbjct: 455 RFERFANPHRPLSATIIELTG------ITDDMLKDAPEVEEVIRDFKEWVGDHTLVA 505


>gi|326389440|ref|ZP_08211007.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW
            200]
 gi|325994445|gb|EGD52870.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW
            200]
          Length = 1407

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 177/902 (19%), Positives = 326/902 (36%), Gaps = 172/902 (19%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            V  + +LV   +G + L E++S+  L +   ++ RI  S L  +  EGLI+ +    G +
Sbjct: 583  VYHVTILVKDQKGLRNLYEIISKSNL-EYFHRTPRIPKSLLISM-REGLIIGSACEQGEV 640

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTH 207
             RA   N  +   + +++F      + +  +   +     +  +  RE   ++  L   +
Sbjct: 641  FRAIVSNLEEKKLENIISFYDYLEVQPVGNNEFLIEKGEVKSVEELREINQKIYLLGKKY 700

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
               +VAT +  FL   D     +LMA          DR    P  Y K   EM+  F  L
Sbjct: 701  NKLVVATGDVHFLDPWDDIYRKILMA---GKGYKDADR---QPPLYFKTTDEMLKEFEYL 754

Query: 268  PE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
             E  A E  ++   + + +++   PI     +     + +  E ELR   +         
Sbjct: 755  GEEVAKEIVIDNPNKIADLVEEVKPI----PDGTFPPVIEGAEEELRRLTLDKAHEIYGD 810

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                     +  + RLD ELN I    ++  ++I    +  + K+   VG  RGS   S+
Sbjct: 811  ------PLPEIVQNRLDRELNSIINNGYAVMYIIAQKLVSKSLKDGYLVG-SRGSVGSSL 863

Query: 386  TAYALTITDIDPLR-----------------------------------------FSLLF 404
             A    IT+++PL                                          F + F
Sbjct: 864  VATMSGITEVNPLPPHYVCPNCKYSEFITDGSYGCGVDMPDKTCPHCGTLMRKDGFDIPF 923

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  +    PD D++F  + +    +Y +  +G   V +  T G+L  K A   V + 
Sbjct: 924  EVFLGFEGDKEPDIDLNFSGEYQPIAHKYTEELFGKGHVFRAGTIGTLADKTAYGYVKKY 983

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                                              R   +    + RL   +    G+ R 
Sbjct: 984  F-------------------------------EERNLIVHKSEIKRL---TVGCTGVKRT 1009

Query: 525  ASTHAAGIVIGDRP--LSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GI++  +   +    P+        +D+  T F+   I    L+K D LG    
Sbjct: 1010 TGQHPGGIMVVPKDKSIYDFTPIQHPADAEDTDVITTHFDYHSI-SGRLLKLDILGHDDP 1068

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            T+++   D             IP DD +T  L T+   LGI   E +       G+    
Sbjct: 1069 TVIRMLEDLTGINAR-----EIPLDDKKTMSLFTSVEALGIDPEELN-TPVGTLGLPEFG 1122

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQI 698
             + +  ++   RP     +V  +   +G +  ++    +I   +   + VI  ++ +M  
Sbjct: 1123 TKFVRQMLIDTRPTTFAELVRISGLSHGTDVWLNNAQDIIREGIATLKEVISTRDDIMLY 1182

Query: 699  AQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
                 +    S    + +R+  G   +EE+++ +        K+G+      +  ++   
Sbjct: 1183 LISKGMDKKLSFKIMENVRKGKG-VTQEEIEEMR--------KHGVPNWFIESCQKI--- 1230

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFC 806
               Y F K+HA AY +++++ A+ K HYP  F A   T+  D+          + IK   
Sbjct: 1231 --KYMFPKAHAVAYVIMAFRIAYFKVHYPEAFYATYFTVRADDFNLDIVLKGKDSIKNAI 1288

Query: 807  QDARQFNIQIMPPS-------------------------VNTPCVDFKVGDNRIYYSLAA 841
            ++         P                             +  V F + +  +   L +
Sbjct: 1289 KEIEAKGNNASPKEKSLLTVLEVALEMYLRGFKFINVDLYKSDAVKFLITEEGLLPPLNS 1348

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQ 900
            ++GVG   A+ I +   +  F S+EDF +R    K+++ V+E L   G L D    +++ 
Sbjct: 1349 LEGVGIQAAKTIAQERENGKFLSVEDFRNRT---KVSKTVIEILKQYGCLTDLPESNQLS 1405

Query: 901  LL 902
            L 
Sbjct: 1406 LF 1407



 Score = 72.3 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S   ++ + A     AIAITD   + +  E  + +   G++ I 
Sbjct: 309 VELHLHTQMSSMDAVASATEVIKRAAKWGHKAIAITDHAVVQAFPEAMEASSKYGVKVIY 368

Query: 72  GC 73
           G 
Sbjct: 369 GV 370


>gi|255994884|ref|ZP_05428019.1| DNA polymerase III, alpha subunit [Eubacterium saphenum ATCC 49989]
 gi|255993597|gb|EEU03686.1| DNA polymerase III, alpha subunit [Eubacterium saphenum ATCC 49989]
          Length = 1229

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 189/994 (19%), Positives = 344/994 (34%), Gaps = 200/994 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC--AAGIQP 69
            V L  H+  S ++G  ++  ++   A+     IAITD   + +  E    A      I+ 
Sbjct: 317  VELHAHTKMSAMDGISNVTELVKTAASFGHKRIAITDHGVVQAFPEAMAAAKSCEEDIKI 376

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G +  +   +        K        I++L  T EG + L +LVS  ++ D   +  
Sbjct: 377  IYGLEGYMYDDERADYDPDSKK--QRTYHIIILAKTREGLKNLYKLVSHSHIND-FYRKP 433

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+  S +++   EGLI+ +    G I   F  N  +        F      +   N    
Sbjct: 434  RLARSVIRKY-REGLILGSACVVGEIYSGFLDNIDEAEMDERAKFYDYLEIQPIGNNSFL 492

Query: 190  RGYDRY-----------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +  +RY              +++ LA  ++ P+ AT +  ++ E D     +LMA     
Sbjct: 493  KTSERYPSVSNDDDLKEINKKIISLADKNDKPVCATCDLHYIEESDAIYRKILMAGQGY- 551

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE------NTVEIARRCSFILQVHAPIL 292
                 D        + +   EM+  F  L E L       NTV IA        V     
Sbjct: 552  -----DDLEGDEGLFFRTTEEMLGEFEYLGEELAKKVVINNTVMIADSIEDFDAVPEGKY 606

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P  IE          +  L +     +E        A      +   R+  EL+ I    
Sbjct: 607  PPHIE--------NADQILNDVCRKKMEALYGDNPPA------EIEDRMHKELSSIIDNG 652

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------- 399
            ++  ++     +  + ++   VG  RGS   S+ A    IT+++PLR             
Sbjct: 653  YAVLYVAAMMLVNKSNEDGYIVG-SRGSVGSSLVAMLSGITEVNPLRPHYRCDECKYFEW 711

Query: 400  ----------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
                                        F++ FE FL  D    PD D++F  + +    
Sbjct: 712  GDDAEYDCGIDMPEKVCPDCNKPLKREGFTIPFETFLGFDGDKEPDIDLNFAGEYQASAH 771

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YV+  +G + V +  T  ++Q K A   V + ++      +R                 
Sbjct: 772  KYVEEIFGSDNVFRAGTVSTIQGKTAYGFVKKYIEETNRNANR----------------- 814

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYR-- 547
                            VDRL+    K  G+ R    H  G++I      + +  P+ R  
Sbjct: 815  --------------HEVDRLVS---KCTGVRRSTGQHPGGVIIVPTENSIYEFTPIQRPA 857

Query: 548  -DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD-- 604
             D++SD+  T F+   IEK  L+K D LG +  ++++K         + + LS    D  
Sbjct: 858  NDMKSDVITTHFDYHSIEK-NLLKLDILGHEAPSIIKKLEKITGVDPLAISLSDKDVDAI 916

Query: 605  -------DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                     E    L   G+ GI +  +  +R  L  ++P    D++ +           
Sbjct: 917  FNGVSTLGIEDDDYLFDGGSFGIPEFGTKLVRSMLTEVKPGRFADLLRISGFSHGT---G 973

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLR 714
            +   N R            LI   +   Q VI  ++ +M       L  G S    + +R
Sbjct: 974  VWQSNAR-----------ELIKNKVASMQDVISTRDDIMNYLIQKGLEPGLSFKIMEAVR 1022

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +  G   ++E             + G  K    +  ++     +Y F ++HA AY +++Y
Sbjct: 1023 KGRGLTPEQEKA---------MLEAGCPKWYIESCNKI-----EYMFPRAHAVAYVIMAY 1068

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------------------------------K 801
            + A+ K ++P+ + A     ++ + +                                  
Sbjct: 1069 RIAYFKVNFPLHYYAVYFEKKIADFDLDMIAEGKEAVKKEIETLYKRQKLDTTKEEDRLT 1128

Query: 802  IKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
            + +   +        + P +       F +  N +   ++A+ GVG+  ++ I E     
Sbjct: 1129 VLELAYEMMARGFGFIRPILKKSKGRSFVIEGNDLIVPMSALNGVGSNASKKIDEELLKG 1188

Query: 861  PFDSLEDFCSRVDSKKLNRRVLE-SLVFAGALDC 893
             F S+++F +R          L+   VF G  D 
Sbjct: 1189 DFSSIQEFSTRTGIGGKLCEELKLRGVFEGIADS 1222


>gi|197301360|ref|ZP_03166441.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC 29176]
 gi|197299517|gb|EDY34036.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC 29176]
          Length = 1517

 Score =  449 bits (1156), Expect = e-123,   Method: Composition-based stats.
 Identities = 168/920 (18%), Positives = 312/920 (33%), Gaps = 177/920 (19%)

Query: 81   DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG 140
            +     N           I++L     G   L +L+S  ++   G++  RI  S L E  
Sbjct: 655  NRFGERNVNAIRKMATHHIIILAKNDIGRYNLYQLISESHMTYYGRR-PRIPKSLLNE-H 712

Query: 141  TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF------GDRLYVN-----LQRH 189
             EGL++ +   +G + +A            L  F   +       +R  +          
Sbjct: 713  REGLVIGSACEAGELYKAILEERPAETIAELADFYDYYEIQPIGNNRFMIGSSKVKNVNS 772

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                +    ++V+L    + P+VAT +  FL  ED     ++MA          D     
Sbjct: 773  EEDLQEINRKIVELGEQFKKPVVATCDVHFLDPEDEVYRRIIMA---GKGFDDAD---TQ 826

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQKEE 307
            P  +L+   EM+  F+ L  A    V I    + + +++  +P+ P     +C  + ++ 
Sbjct: 827  PPLFLRTTDEMLEEFAYLGSAKAREVVIDNPQKIAKMIEKISPVNP----NKCPPVIQDS 882

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + ELR+           +              RL+ ELN I    ++  ++I    +  +
Sbjct: 883  DQELRDICYRKAHEMYGEDL------PVQVSSRLEKELNSIISNGYAVMYIIAQKLVWKS 936

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
              +   VG  RGS   S  A    IT+++PL                             
Sbjct: 937  NADGYLVG-SRGSVGSSFVATMSGITEVNPLSPHYYCEKCHYSDFDSEEVRAFAGGCGYD 995

Query: 400  -----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                             F + FE FL       PD D++F  D + +  +Y +  +G   
Sbjct: 996  MPDRMCPKCGAKLIKAGFDIPFETFLGFKGDKEPDIDLNFSGDYQAKAHKYTEVLFGEGH 1055

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
              +  T G+L  K A   V                                      E R
Sbjct: 1056 TFKAGTIGTLADKTAYGFVKNYY----------------------------------EER 1081

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQ 557
                    +  +++   G+ R    H  GIV+      +++  P+          +  T 
Sbjct: 1082 GQRKRRCEIERVTEGCTGIRRSTGQHPGGIVVLPHGHSINEFTPVQHPANDMECGITTTH 1141

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS--------LIPFDDHETY 609
            F+   I+   L+K D LG    T+++   D++    +  + +         IP DD    
Sbjct: 1142 FDYHSIDH-NLLKLDILGHDDPTMIRTLEDYITSDAMPNEYNAEHPFIATEIPLDDKRVI 1200

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L      LGI   +  G +    G+     + +I +V   +P  + +++  +   +G  
Sbjct: 1201 ELFHGTEVLGIKPEDIDGCKIGSLGIPEFGTDFVIQMVQDTKPQTLSDLIRISGLSHGTN 1260

Query: 670  KIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEM 725
              + +   L+          I  ++ +M       + S  + +  + +R+  G K + E 
Sbjct: 1261 VWLGNAQELVKSGTATISTAICTRDDIMIYLINQGVESALAFTIMESVRKGKGLKPEWEE 1320

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
                           +      + +    K   Y F K+HAAAY +++Y+ A+ K +YP+
Sbjct: 1321 A--------------MKAQNVPDWYIWSCKKISYMFPKAHAAAYVMMAYRIAYCKINYPL 1366

Query: 786  EFLAASMTLEMD---------------------------------NVEKIKKFCQDARQF 812
             + AA  ++  D                                 +  K  K  Q+    
Sbjct: 1367 AYYAAYFSIRADAFSYEIMCQGREKLDYYMKDYKRRSDTLTKKEQDTMKDMKIVQEMYAR 1426

Query: 813  NIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              + +P          F++ D ++  S A+I+G+G   A  + EA  D P+ SL+DF  R
Sbjct: 1427 GFEFVPVDLYKAKAKMFQIVDGKLMPSFASIEGMGDKAAEAVEEAGKDGPYLSLDDFRQR 1486

Query: 872  VDSKKLNRRVLESLVFAGAL 891
                K    ++  L   G L
Sbjct: 1487 TKVSKTVIDLMSELGLFGNL 1506



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
           V L  H+  S ++G   + +I+ +      PAIAITD   
Sbjct: 392 VELHCHTKMSDMDGVSEVKDIVKRAHDWGHPAIAITDHGV 431


>gi|187935470|ref|YP_001885466.1| DNA polymerase III PolC [Clostridium botulinum B str. Eklund 17B]
 gi|187723623|gb|ACD24844.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum B str. Eklund 17B]
          Length = 1452

 Score =  449 bits (1156), Expect = e-123,   Method: Composition-based stats.
 Identities = 172/899 (19%), Positives = 316/899 (35%), Gaps = 165/899 (18%)

Query: 90   KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
                     I++L  T  G + L +L+S+ ++ D   +  R   + L E   EGLI+ + 
Sbjct: 622  DIRKQPTYHIIILAKTQAGLKNLYKLISKSHI-DNFFRRPRTPKTLLSEF-REGLIIGSA 679

Query: 150  GSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYR--ESQVV 201
              +G + +A     S    K ++ F      + +  +   +     +  +  R    ++ 
Sbjct: 680  CEAGEVYKAVLEGRSDDEIKEIIEFYDYVEIQPIDNNNFLIAKGSVKDEEELRDINRKIY 739

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +L      P VAT +  FL+  D     ++MA    +           P  YLK   EM+
Sbjct: 740  RLGKECNKPTVATGDVHFLNPNDEAFRKIIMAGQGFSDADN------QPPLYLKTTEEML 793

Query: 262  SIFSDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
              FS L + +   V I    + S  + V  PI       + +  +++ +N   NKA A  
Sbjct: 794  KEFSYLGKDIAREVVIDNPKKISDSIGVLKPIPDETYPPKIEGAEEDIKNMTLNKAHA-- 851

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                    I      +  ++RLD ELN I    ++  +LI    +  + ++   VG  RG
Sbjct: 852  --------IYGEVLPEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSTEDGYLVG-SRG 902

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S  A    IT+++ L                                         
Sbjct: 903  SVGSSFVATMSDITEVNGLPPHYVCPKCKKSEFFLDGSISSGADLPDKNCPDCDVPYIKD 962

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               + FE FL  +    PD D++F  + +  V RY +  +G     +  T G++  K A 
Sbjct: 963  GHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHRYTEVLFGKGHTFKAGTIGTIAEKTAY 1022

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V + L                                 RE   +   ++RL   +   
Sbjct: 1023 GYVKKYLDE-------------------------------REIITSSAEIERL---TLGC 1048

Query: 519  EGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDF 573
             G+ R    H  GI++   D  +    P+         D+  T F+   I    L+K D 
Sbjct: 1049 TGIKRTTGQHPGGIMVVPADNEIYNFCPIQHPADDNDTDVVTTHFDYHSI-SGRLLKLDI 1107

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            LG    T+L+   D        +D   IP +D +   L T+   LG+ + E         
Sbjct: 1108 LGHDDPTVLRMLQDLTG-----LDPKTIPLNDEKVLSLFTSPEALGVTKEELE-CEVGSY 1161

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQ 692
            G+     + +  ++   +P    ++V  +   +G +  ++     I       +  I  +
Sbjct: 1162 GLPEFGTKFVRGMLVDTQPKTFADLVRISGLSHGTDVWLNNAQYYIKEGFTTLRDCIATR 1221

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            + +M +  +  G     A  +   + K      D +K           + +      +  
Sbjct: 1222 DDIM-VYLMYKGLPPKSAFTIMEKVRKGKGLSEDDEKL----------MKEHEVPEWYIG 1270

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------ 800
              K   Y F K HA AY +++ + A+ K +YP  + A   T+  D+ +            
Sbjct: 1271 SCKKIKYMFPKGHAVAYVMMAVRIAYYKVYYPEAYYATYFTVRADDFDANLVCLGDGAVH 1330

Query: 801  -KIKKFCQ--------------------DARQFNIQIMPPSVNTP-CVDFKVGDNRIYYS 838
             K+++  +                    +A +  ++ +   +     + FK+ D  +   
Sbjct: 1331 TKLQELYELGNNASVKDKGLITVLELCFEAYKRGVKFLRVDLYKSEGIKFKIEDGALRLP 1390

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L ++ GV    A+ I+EA     F S ED   R     +++ V+ESL   G LD    +
Sbjct: 1391 LNSLPGVADNAAKSIVEARVKGEFISKEDLRIRA---GVSKTVIESLSNHGCLDGLSET 1446



 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L +H++ S ++G  S + +++  A     AIAITD   + +  E    +    I+ + 
Sbjct: 354 IELHLHTNMSSMDGITSASKLIETAAKWGHEAIAITDHGVVQAYPEAQLASKKNKIKILY 413

Query: 72  GC 73
           G 
Sbjct: 414 GV 415


>gi|225026305|ref|ZP_03715497.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353]
 gi|224956369|gb|EEG37578.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353]
          Length = 1484

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 181/945 (19%), Positives = 321/945 (33%), Gaps = 192/945 (20%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            L F +      +  +        M  +L                ++LV    G   L  L
Sbjct: 609  LRFVEMLEEQDVHTLAKLNDMGAMSPDLIKKAPS-------YHGIILVKNETGRINLNRL 661

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L D   +  R+  S +Q+   EGLI+ +   +G + +A     S+     L+ F 
Sbjct: 662  VSASHL-DYFNRRPRMPESLIQKY-REGLILGSACEAGELFQAVIRGKSEEELAELVRFY 719

Query: 176  KLFGDRLYVNLQRHRGYDRY----------RESQVVQLAYTHELPLVATNNSLFLSEEDY 225
                 +   N       DRY             ++V+L   +  P+VAT +  FL+ ED 
Sbjct: 720  DYLEIQPIGNNMFMLESDRYEAKTVEDLQNYNRKIVELGERYHKPVVATCDVHFLNPEDE 779

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA------LENTVEIAR 279
            +   +LMA       S  D        Y +   EM+  F+ L EA      + NT +IA 
Sbjct: 780  QYRRILMA---GKGFSDADN---QAPLYFRTTEEMLEEFAYLGEAKAKEVVITNTNKIAD 833

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
                I  VH    P  I K         +  L                           +
Sbjct: 834  MIEKISPVHPDKCPPVIPKS--------DETLTKICYDKAHEIYGPDL------PDIVEE 879

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL  ELN I    F+  ++I    +  +  +   VG  RGS   S  A    IT+++PL 
Sbjct: 880  RLQRELNSIISNGFAVMYIIAQKLVWDSNDHGYLVG-SRGSVGSSFVATMAGITEVNPLS 938

Query: 400  -----------------------------------------------FSLLFERFLNPDR 412
                                                             + FE FL    
Sbjct: 939  AHYICPKCHYVDFDSDAVRPYSKKGMSGCDMPDRDCPVCGTPLQKEGHDIPFETFLGFKG 998

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
               PD D++F  + + +  +YV+  +G  +  +  T G+L  K A   V +         
Sbjct: 999  NKEPDIDLNFSGEYQSKAHKYVEVIFGEGKAFRAGTIGTLAEKTAYGYVYKYF------- 1051

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
                                       E R        +  +++   G+ R    H  GI
Sbjct: 1052 ---------------------------EERDIHKRRCEMERLAEGCTGVKRTTGQHPGGI 1084

Query: 533  VIGDRP--LSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            ++      + +   +     DV +D+  T F    I+   L+K D LG    T++++  D
Sbjct: 1085 IVVPHEHEIYEFTAIQHPANDVNTDIITTHFEYHSIDH-NLLKLDILGHDDPTMIRRLED 1143

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
                    +D + IP DD E   L  +   LGI   +  G+     G+     E ++ ++
Sbjct: 1144 LTG-----MDATTIPLDDPEVMSLFHSTDILGITPEDIGGIEMGSLGVPEFGTEFVMQML 1198

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS--- 703
                P    ++V  +   +G +  + +   LI+    E    I  ++ +M     +    
Sbjct: 1199 KDTNPKCFSDLVRISGLSHGTDVWLGNAQTLIEEGKAEISTAICCRDDIMTYLINMGLDK 1258

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
              S +  + +R+  G K + E +              ++     + +    K   Y F K
Sbjct: 1259 EQSFTIMESVRKGKGLKPEWEEE--------------MTSHGVPDWYIWSCKKIKYMFPK 1304

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASM------------------------------- 792
            +HAAAY ++ ++ AW K H P+ + AA                                 
Sbjct: 1305 AHAAAYVMMGWRVAWFKVHKPLAYYAAYFGIRASAFSYEIMCRGKERLDIALTELLKTPK 1364

Query: 793  ---TLEMDNVEKIKKFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               T +  +  +  +  Q+      + MP  +      + ++ D +I   L++++G+G  
Sbjct: 1365 DQQTKKDQDTIRDGRIAQEMYARGFEFMPIDIYKAKARECQIIDGKIMPPLSSVEGLGDK 1424

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNR-RVLESLVFAGALD 892
                + EA+   PF SLE+F ++    K N  +++E  +  G  +
Sbjct: 1425 ACEQVEEAAKHGPFTSLENFRNQAKVSKTNVDKMVELGILTGLPE 1469



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           V L +H+  S L+  + +  ++++  A   PA+AITD   L
Sbjct: 367 VELHLHTVMSDLDSVVDIKKVINQAKAWGHPAMAITDHGVL 407


>gi|167037626|ref|YP_001665204.1| DNA polymerase III PolC [Thermoanaerobacter pseudethanolicus ATCC
            33223]
 gi|320116041|ref|YP_004186200.1| DNA polymerase III subunit alpha [Thermoanaerobacter brockii subsp.
            finnii Ako-1]
 gi|166856460|gb|ABY94868.1| DNA polymerase III, alpha subunit [Thermoanaerobacter
            pseudethanolicus ATCC 33223]
 gi|319929132|gb|ADV79817.1| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii subsp.
            finnii Ako-1]
          Length = 1407

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 177/902 (19%), Positives = 325/902 (36%), Gaps = 172/902 (19%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            V  + +LV   +G + L E++S+  L +   ++ RI  S L     EGLI+ +    G +
Sbjct: 583  VYHVTILVKDQKGLRNLYEIISKSNL-EYFHRTPRIPKSLLIS-RREGLIIGSACEQGEV 640

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTH 207
             RA   N  +   + +++F      + +  +   +     +  +  RE   ++  L   +
Sbjct: 641  FRAIVSNLEEKKLENIISFYDYLEVQPVGNNEFLIGKGEVKSVEELREINRKIYLLGKKY 700

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
               +VAT +  FL   D     +LMA          DR    P  Y K   EM+  F  L
Sbjct: 701  NKLVVATGDVHFLDPWDDIYRKILMA---GKGYKDADR---QPPLYFKTTDEMLKEFEYL 754

Query: 268  PE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
             E  A E  ++   + + +++   PI     +     + +  E ELR   +         
Sbjct: 755  GEEVAKEIVIDNPNKIADLVEEVKPI----PDGTFPPVIEGAEEELRKLTLDKAHEIYGD 810

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                     +  + RLD ELN I    ++  ++I    +  + K+   VG  RGS   S+
Sbjct: 811  ------PLPEIVQNRLDRELNSIINNGYAVMYIIAQKLVSKSLKDGYLVG-SRGSVGSSL 863

Query: 386  TAYALTITDIDPLR-----------------------------------------FSLLF 404
             A    IT+++PL                                          F + F
Sbjct: 864  VATMSGITEVNPLPPHYVCPNCKYSEFITDGSYGCGVDMPDKTCPHCGTLMRKDGFDIPF 923

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  +    PD D++F  + +    +Y +  +G   V +  T G+L  K A   V + 
Sbjct: 924  EVFLGFEGDKEPDIDLNFSGEYQPIAHKYTEELFGKGHVFRAGTIGTLADKTAYGYVKKY 983

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                                              R   +    + RL   +    G+ R 
Sbjct: 984  F-------------------------------EERNLIVHKSEIKRL---TVGCTGVKRT 1009

Query: 525  ASTHAAGIVIGDRP--LSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GI++  +   +    P+        +D+  T F+   I    L+K D LG    
Sbjct: 1010 TGQHPGGIMVVPKDKSIYDFTPIQHPADAEDTDVITTHFDYHSI-SGRLLKLDILGHDDP 1068

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            T+++   D             IP DD +T  L T+   LGI   E +       G+    
Sbjct: 1069 TVIRMLEDLTGINAR-----EIPLDDKKTMSLFTSVEALGIDPEELN-TPVGTLGLPEFG 1122

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQI 698
             + +  ++   RP     +V  +   +G +  ++    +I   +   + VI  ++ +M  
Sbjct: 1123 TKFVRQMLIDTRPTTFAELVRISGLSHGTDVWLNNAQDIIREGIATLKEVISTRDDIMLY 1182

Query: 699  AQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
                 +    S    + +R+  G   +EE+++ +        K+G+      +  ++   
Sbjct: 1183 LISKGMDKKLSFKIMENVRKGKG-VTQEEIEEMR--------KHGVPNWFIESCQKI--- 1230

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFC 806
               Y F K+HA AY +++++ A+ K HYP  F A   T+  D+          + IK   
Sbjct: 1231 --KYMFPKAHAVAYVIMAFRIAYFKVHYPEAFYATYFTVRADDFNLDIVLKGKDSIKNAI 1288

Query: 807  QDARQFNIQIMPPS-------------------------VNTPCVDFKVGDNRIYYSLAA 841
            ++         P                             +  V F + +  +   L +
Sbjct: 1289 KEIEAKGNNASPKEKSLLTVLEVALEMYLRGFKFINVDLYKSDAVKFFITEEGLLPPLNS 1348

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQ 900
            ++GVG   A+ I +   +  F S+EDF +R    K+++ V+E L   G L D    +++ 
Sbjct: 1349 LEGVGIQAAKTIAQERENGKFLSVEDFRNRT---KVSKTVIEILKQYGCLTDLPESNQLS 1405

Query: 901  LL 902
            L 
Sbjct: 1406 LF 1407



 Score = 72.3 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S   ++ + A     AIAITD   + +  E  + +   G++ I 
Sbjct: 309 VELHLHTQMSSMDAVASATEVIKRAAKWGHKAIAITDHAVVQAFPEAMEASSKYGVKVIY 368

Query: 72  GC 73
           G 
Sbjct: 369 GV 370


>gi|15614981|ref|NP_243284.1| DNA polymerase III PolC [Bacillus halodurans C-125]
 gi|13959348|sp|Q9KA72|DPO3_BACHD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|10175038|dbj|BAB06137.1| DNA polymerase III (alpha subunit) [Bacillus halodurans C-125]
          Length = 1433

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 184/911 (20%), Positives = 324/911 (35%), Gaps = 187/911 (20%)

Query: 87   NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146
             +G          +LL  T EG + L +LVS  ++ +   ++ RI  S LQ+   EG+++
Sbjct: 598  GEGNFHRQRPSHCILLAQTQEGLKNLYKLVSMAHV-EYFYRTPRIPRSQLQK-HREGILV 655

Query: 147  LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-------FGDRLYVNLQRHRGYDRYRESQ 199
             +G   G +       + Q  E+    +  +       +   +   L + R   +   + 
Sbjct: 656  GSGCDKGEVFEGMMQKTPQEVEEIAKFYDYIEVQPLANYEHLIEKELVKSREALQEIVAN 715

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V+L      P+VAT N+ +L EEDY    +L+A       +     +  P  + +  SE
Sbjct: 716  IVKLGEQLGKPVVATGNAHYLKEEDYIYRKILIASQGG---ANPLNKQTLPQVHFRTTSE 772

Query: 260  MVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
            M+  F+ L E  A E  V      +  ++   PI  +    + +   +E      N+A  
Sbjct: 773  MLEAFAFLGEEKAKEIVVTNTNHIADQIEEIHPIPDKLYTPKIEGADEEIRQMSYNRARK 832

Query: 318  GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
                      I      +    RL+ EL  I    F+  +LI    ++ +  +   VG  
Sbjct: 833  ----------IYGDPLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLDDGYLVG-S 881

Query: 378  RGSGAGSVTAYALTITDIDPLRF------------------------------------- 400
            RGS   S  A    IT+++PL                                       
Sbjct: 882  RGSVGSSFVATMTEITEVNPLPPHYVCPNCHHSHFFNDGSVGSGYDLPDENCPKCGTPYV 941

Query: 401  ----SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
                 + FE FL      +PD D++F  + +     Y +  +G   V +  T G++  K 
Sbjct: 942  KDGQDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKELFGESYVYRAGTIGTVAEKT 1001

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A   V +  Q  +                            FR A      +DRL+    
Sbjct: 1002 AYGYV-KGYQSDHDL-------------------------HFRGA-----EIDRLV---T 1027

Query: 517  KLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKF 571
               G+ R    H  GI++      +    P+     D  ++   T F+   I    L+K 
Sbjct: 1028 GCTGVKRTTGQHPGGIIVVPDYMDIHDFCPIQFPADDRGAEWKTTHFDFHSIHD-NLLKL 1086

Query: 572  DFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY--------------HLLTTKGT 617
            D LG    T+++   D        +D   IP DD E                 +L   GT
Sbjct: 1087 DILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKIFSGPDVLGVTEEQILCKTGT 1141

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            LGI +  +  +RQ LE  +P    +++ +  L       ++ + N              L
Sbjct: 1142 LGIPEFGTRFVRQMLEETKPSTFSELVQISGLSHGT---DVWLNNAN-----------EL 1187

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            I     E + VI  ++ +M +  +  G   S A  +   + K         +  +I    
Sbjct: 1188 IYNGTCELKDVIGCRDDIM-VYLIYKGLEPSLAFKIMEFVRKGK-----GLQPEWIEEMK 1241

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            K+ +      +  ++      Y F K+HAAAY +++ + A+ K HYP+ + A+  T+  D
Sbjct: 1242 KHDVPDWYIGSCLKI-----KYMFPKAHAAAYVLMAVRIAYFKVHYPILYYASYFTVRAD 1296

Query: 798  NVE---------KIKKFCQDARQFNIQIMPPS-------------------------VNT 823
            + +          I+   ++     +   P                             +
Sbjct: 1297 DFDLDTMVKGSAAIRAKIEEINGKGLDASPKEKSLLTVLELALEMVERGFSFQKVDLYRS 1356

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
               +F V  N +     A+ GVGT  A +I++A  ++ F S ED   R    K+ + VLE
Sbjct: 1357 EATEFLVEGNTLIPPFNALTGVGTNAAINIVKARDEREFLSKEDLQQR---SKITKTVLE 1413

Query: 884  SLVFAGALDCF 894
            +L   G L+  
Sbjct: 1414 NLDAHGCLEGL 1424



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 68/414 (16%), Positives = 134/414 (32%), Gaps = 70/414 (16%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++G  S    + + +     AIAITD   + +  E    +   GI+ I 
Sbjct: 333 VELHLHTAMSQMDGISSAGAYVTQASKWGHKAIAITDHGVVQAFPEAYGASQKHGIKVIY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G + ++         N+   P      +V  V T  G   +   +  +  +      +  
Sbjct: 393 GVEANLVDDGVPIAYNEAHIPLLDSEFVVFDVET-TGLSAVYNKIIELAAVKVKNGEIID 451

Query: 132 CLSWLQEIGTEG---LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                 +        +I LTG     I         +V E+ L  F    GD +   L  
Sbjct: 452 RFERFADPHEPLTNTIIELTG-----ITDDMLKGQPEV-EQVLNEFHAFIGDAV---LVA 502

Query: 189 HRG---------------------------------YDRYRESQVVQLAYTHELPLV--- 212
           H                                   Y   +  ++  L    ++ LV   
Sbjct: 503 HNASFDMGFLNTGFQKMGLGEAKNPVIDTLELGRFLYPTLKNHRLNTLCKKFDIELVSHH 562

Query: 213 -------ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                  AT + L+   +D    D+L     +  + + +  R  P H +        + +
Sbjct: 563 RAIYDAEATGHLLWRMVKDATERDILYHDQLNDNMGEGNFHRQRPSHCI--------LLA 614

Query: 266 DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
              E L+N  ++            P +PR   ++  +         + +   G+  +  Q
Sbjct: 615 QTQEGLKNLYKLVSMAHVEYFYRTPRIPRSQLQKHREGILVGSGCDKGEVFEGMMQKTPQ 674

Query: 326 GA--IAKGYHAQDYRQRLDFELNVIAR---MKFSGYFLIVADFIQWAKKNNIPV 374
               IAK Y   + +   ++E ++I +           IVA+ ++  ++   PV
Sbjct: 675 EVEEIAKFYDYIEVQPLANYE-HLIEKELVKSREALQEIVANIVKLGEQLGKPV 727


>gi|312876753|ref|ZP_07736732.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus
            6A]
 gi|311796484|gb|EFR12834.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus
            6A]
          Length = 1402

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 165/880 (18%), Positives = 299/880 (33%), Gaps = 168/880 (19%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
                +LV   +G + L +LVS  +L +   +  RI  S L ++  +GL++ +   SG I 
Sbjct: 579  YHATILVKNQQGLKNLYKLVSYSHL-EYFYKRPRIPKSLLIQL-KDGLLIGSACESGEIF 636

Query: 157  RAFFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRGYDRYRE--SQVVQLAYTHE 208
            RAF    S+   +++  F           +   +     +  +  RE   ++  L     
Sbjct: 637  RAFLEGKSEEEIEKIAAFYDFLEIMPVENNSFLIREGYLKDEEDLREINKKIYNLGKKLG 696

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
              +VAT+++ +          +L        V         P  Y +   EM+  F  L 
Sbjct: 697  KLVVATSDAHYCHPHQRVLRQILKHNQGYNDVEN------DPQLYFRTTDEMLKEFEYLG 750

Query: 269  E--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
            +    E  VE   + + +++   P+       + D  ++E  N    KA           
Sbjct: 751  KDACYEVVVENTNKIADMIEDVKPVPDETFPPKIDGAEEEIYNMTMKKAHE--------- 801

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
             I      +  + RL+ ELN I +  F+  +LI    +  +  +   VG  RGS   S+ 
Sbjct: 802  -IYGDPLPEIVKARLEKELNSIIKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVGSSLV 859

Query: 387  AYALTITDIDPLR-----------------------------------------FSLLFE 405
            A    IT+++PL                                            + FE
Sbjct: 860  ATMCGITEVNPLPPHYVCPNCKYSEFVTDGSVGCGYDLEDKNCPRCGEKLKKDGHDIPFE 919

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
             FL  D    PD D++F  D +    ++ +  +G   V +  T  ++  K A   V +  
Sbjct: 920  TFLGFDGDKEPDIDLNFSGDYQPIAHKFTEELFGQGYVFRAGTISTVAEKTAHGFVTKY- 978

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
                                              E +  +     +L +SQ   G+ R  
Sbjct: 979  ---------------------------------AEEKGLNLHPAEILRLSQGCTGVKRTT 1005

Query: 526  STHAAGIVIGDRP--LSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              H  G++I  R   +    P+     S    +  T F+   I    L+K D LG    T
Sbjct: 1006 GQHPGGLMIVPRDKEIFDFTPIQHPADSGDKSVITTHFDYHAI-SGRLLKLDILGHDDPT 1064

Query: 581  LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +++   D        VD   IP DD  T  + T+   LGI   +         G+     
Sbjct: 1065 VIRMLQDLTG-----VDPRSIPLDDKATMSIFTSTEALGISPEDID-CEVGTFGIPEFGT 1118

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIA 699
              +  ++   +P     +V  +   +G     +    L+   +   + VI  ++ +M   
Sbjct: 1119 RFVRQMLIETKPKTFAELVRISGLSHGTNVWTNNAQDLVRNGIATLKEVISTRDDIMLYL 1178

Query: 700  Q---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
                +    S    + +R+  G K ++E                I +    + +    K 
Sbjct: 1179 IQKGVPPKDSFRIMEDVRKGKGLKPEDE--------------QLIREHNVPDWYIESCKK 1224

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIK 803
              Y F K+HAAAY +++++ A+ K HY   F A   T+  D+ +             KI+
Sbjct: 1225 ITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYFTVRADDFDYATILKGRDAIRQKIR 1284

Query: 804  --------------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAI 842
                                +   +     ++  P  +N    + F + D  +     A+
Sbjct: 1285 DLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAERFIIKDGGLLIPFNAL 1344

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
              VG   A+ I+EA  +  F S++D   R    K    +L
Sbjct: 1345 PNVGVAAAKSIVEARKEGKFLSVDDLIRRAKLNKQVIEIL 1384



 Score = 75.8 bits (185), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 30/71 (42%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             S   V L  H+  S ++   S   ++   A+    A+AITD   + +  E  + + + 
Sbjct: 298 TSSSKRVELHAHTKMSAMDAVCSAEELIKLAASMGHRAVAITDHGVVQAFPEAQEASKSC 357

Query: 66  GIQPIIGCQLD 76
            I+ I G +  
Sbjct: 358 NIKVIYGMECY 368


>gi|167040287|ref|YP_001663272.1| DNA polymerase III PolC [Thermoanaerobacter sp. X514]
 gi|300914371|ref|ZP_07131687.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307724393|ref|YP_003904144.1| DNA polymerase III subunit alpha [Thermoanaerobacter sp. X513]
 gi|166854527|gb|ABY92936.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X514]
 gi|300889306|gb|EFK84452.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307581454|gb|ADN54853.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X513]
          Length = 1407

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 177/902 (19%), Positives = 325/902 (36%), Gaps = 172/902 (19%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            V  + +LV   +G + L E++S+  L +   ++ RI  S L     EGLI+ +    G +
Sbjct: 583  VYHVTILVKDQKGLRNLYEIISKSNL-EYFHRTPRIPKSLLIS-RREGLIIGSACEQGEV 640

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTH 207
             RA   N  +   + +++F      + +  +   +     +  +  RE   ++  L   +
Sbjct: 641  FRAIVSNLEEKKLENIISFYDYLEVQPVGNNEFLIGKGEVKSVEELREINRKIYLLGKKY 700

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
               +VAT +  FL   D     +LMA          DR    P  Y K   EM+  F  L
Sbjct: 701  NKLIVATGDVHFLDPWDDIYRKILMA---GKGYKDADR---QPPLYFKTTDEMLKEFEYL 754

Query: 268  PE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
             E  A E  ++   + + +++   PI     +     + +  E ELR   +         
Sbjct: 755  GEEVAKEIVIDNPNKIADLVEEVKPI----PDGTFPPVIEGAEEELRRLTLDKAHEIYGD 810

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                     +  + RLD ELN I    ++  ++I    +  + K+   VG  RGS   S+
Sbjct: 811  PL------PEIVQNRLDRELNSIINNGYAVMYIIAQKLVSKSLKDGYLVG-SRGSVGSSL 863

Query: 386  TAYALTITDIDPLR-----------------------------------------FSLLF 404
             A    IT+++PL                                          F + F
Sbjct: 864  VATMSGITEVNPLPPHYVCPNCKYSEFITDGSYGCGVDMPDKTCPHCGTLMRKDGFDIPF 923

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  +    PD D++F  + +    +Y +  +G   V +  T G+L  K A   V + 
Sbjct: 924  EVFLGFEGDKEPDIDLNFSGEYQPIAHKYTEELFGKGHVFRAGTIGTLADKTAYGYVKKY 983

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                                              R   +    + RL   +    G+ R 
Sbjct: 984  F-------------------------------EERNLIVHKSEIKRL---TVGCTGVKRT 1009

Query: 525  ASTHAAGIVIGDRP--LSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GI++  +   +    P+        +D+  T F+   I    L+K D LG    
Sbjct: 1010 TGQHPGGIMVVPKDKSIYDFTPIQHPADAEDTDVITTHFDYHSI-SGRLLKLDILGHDDP 1068

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            T+++   D             IP DD +T  L T+   LGI   E +       G+    
Sbjct: 1069 TVIRMLEDLTGINAR-----EIPLDDKKTMSLFTSVEALGIDPEELN-TPVGTLGLPEFG 1122

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQI 698
             + +  ++   RP     +V  +   +G +  ++    +I   +   + VI  ++ +M  
Sbjct: 1123 TKFVRQMLIDTRPTTFAELVRISGLSHGTDVWLNNAQDIIREGIATLKEVISTRDDIMLY 1182

Query: 699  AQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
                 +    S    + +R+  G   +EE+++ +        K+G+      +  ++   
Sbjct: 1183 LISKGMDKKLSFKIMENVRKGKG-VTQEEIEEMR--------KHGVPNWFIESCQKI--- 1230

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFC 806
               Y F K+HA AY +++++ A+ K HYP  F A   T+  D+          + IK   
Sbjct: 1231 --KYMFPKAHAVAYVIMAFRIAYFKVHYPEAFYATYFTVRADDFNLDIVLKGKDSIKNAI 1288

Query: 807  QDARQFNIQIMPPS-------------------------VNTPCVDFKVGDNRIYYSLAA 841
            ++         P                             +  V F + +  +   L +
Sbjct: 1289 KEIEAKGNNASPKEKSLLTVLEVALEMYLRGFKFINVDLYKSDAVKFLITEEGLLPPLNS 1348

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQ 900
            ++GVG   A+ I +   +  F S+EDF +R    K+++ V+E L   G L D    +++ 
Sbjct: 1349 LEGVGIQAAKTIAQERENGKFLSVEDFRNRT---KVSKTVIEILKQHGCLIDLPESNQLS 1405

Query: 901  LL 902
            L 
Sbjct: 1406 LF 1407



 Score = 72.3 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S   ++ + A     AIAITD   + +  E  + +   G++ I 
Sbjct: 309 VELHLHTQMSSMDAVASATEVIKRAAKWGHKAIAITDHAVVQAFPEAMEASSKYGVKVIY 368

Query: 72  GC 73
           G 
Sbjct: 369 GV 370


>gi|327441015|dbj|BAK17380.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046]
          Length = 1443

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 174/942 (18%), Positives = 328/942 (34%), Gaps = 195/942 (20%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            L   ++A   GI+ +I     +  ++  K +              +L     G + L +L
Sbjct: 585  LHLLKQAADLGIKNLIEMNDHVGGEEGYKQSRPS--------HCTVLAVDDAGLKNLFKL 636

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +S  +      +  RI  S LQ++  +GLI+ +G S+G +       + + AE+    + 
Sbjct: 637  ISISHTET-FYRVPRIRRSDLQKL-RQGLIVGSGCSNGELFETMMNKTQEEAERIAKFYD 694

Query: 176  --KLFGDRLYVNLQRHRG-YDRYRES----QVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    +Y  L      +D +       ++V+L     LP+VAT N  +L E D +  
Sbjct: 695  YLEVMPKPVYSPLVDGGTVHDEWALEDIIRRIVKLGKKLNLPVVATGNVHYLHETDAKFR 754

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQ 286
             +L+        +        P  + +   EM+  F  L    A E  V   +R + ++ 
Sbjct: 755  QILVGSMGG---ANPLNRNPLPKVHFRTTDEMLKEFDFLGPDLAKEIVVTNTQRVADMIG 811

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               PI       + +      ++E+ N           +         +  + R+D EL 
Sbjct: 812  HVKPIKDDLYTPKIEG----SDDEVTNLTYEMAHSIYGENL------PEIVQARIDKELK 861

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------ 400
             I    F   +LI A  ++ +  +   VG  RGS   S+ A  + IT+++PL        
Sbjct: 862  SILGHGFGVIYLISAKLVKKSLADGYLVG-SRGSVGSSLVATFMEITEVNPLPPHYVCPN 920

Query: 401  -----------------------------------SLLFERFLNPDRMSMPDFDIDFCQD 425
                                                + FE FL      +PD D++F  +
Sbjct: 921  CKHSEFIADGSVASGYDLPNKQCPECGAPFKKDGQDIPFETFLGFKGDKVPDIDLNFSGE 980

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             + +   Y +  +G + V +  T G++  K A   V +          R           
Sbjct: 981  YQPQAHNYTKVLFGEDYVFRAGTIGTVAEKTAYGYV-KGYGSDNGITYR----------- 1028

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLV 543
                               +  VDRL+   Q   G+ R    H  GI++      +    
Sbjct: 1029 -------------------NAEVDRLV---QGCTGVKRTTGQHPGGIIVVPDYMDIYDFS 1066

Query: 544  PMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+        S+   T F+   I    ++K D LG    T+++   D        +D   
Sbjct: 1067 PVQFPADAQDSEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SGIDPKT 1120

Query: 601  IPFDDHETYHLLT--------------TKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            IP DD     + +                GTLGI +  +  +RQ LE  +P    +++ +
Sbjct: 1121 IPTDDPIVMKIFSSTESLGVTEKQIGTKTGTLGIPEFGTKFVRQMLEETKPSTFSELVQI 1180

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
              L     +          N +E I     ++  ++     +++Y    +    L   ++
Sbjct: 1181 SGLSHGTDVWLG-------NAQELIKDGTCVLKEVIGCRDDIMVY----LIYQDLEPSFA 1229

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
                + +R+   K + +EM+ +            +        +    K   Y F K+HA
Sbjct: 1230 FKIMESVRKG--KGLTDEMEAE------------MRAKKVPEWYIDSCKKIKYMFPKAHA 1275

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK---------KFCQDARQFNIQIM 817
            AAY +++ + AW K H+P+ + AA  T+   + + I          K   +     +   
Sbjct: 1276 AAYVLMAVRIAWFKVHHPILYYAAYFTVRASDFDLIAMTQGSVMIRKKIDEINMKGLDAA 1335

Query: 818  PPS-------------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            P                             +   +F +  N +     AI G+GT  A+ 
Sbjct: 1336 PKEKSLLTVMELALEMCERGMSFKKVDLYRSHASEFIIEGNSLIPPFDAIPGLGTNVAKQ 1395

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I+EA  +  F S ED   R    ++++ ++E +   G L+  
Sbjct: 1396 IVEARKNGEFLSKEDLQQR---GRVSKTLIEYMDELGCLEGM 1434



 Score = 78.5 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ + A    PAIA+TD   + +  E        GI+ I 
Sbjct: 343 VELHLHTPMSQMDAMTSVDKLVAQAAKWGHPAIAVTDHAVVQAFPEAYAAGKKNGIKVIY 402

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G + ++       + +           IV  V T  G+  
Sbjct: 403 GVEANLVDDGKPIVYDPIDVDLEDATYIVFDVET-TGFSN 441


>gi|312793079|ref|YP_004026002.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kristjanssonii
            177R1B]
 gi|312180219|gb|ADQ40389.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
            kristjanssonii 177R1B]
          Length = 1402

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 165/880 (18%), Positives = 300/880 (34%), Gaps = 168/880 (19%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
                +LV   +G + L +LVS  +L +   +  RI  S L ++  +GL++ +   SG I 
Sbjct: 579  YHATILVKNQQGLKNLYKLVSYSHL-EYFYKRPRIPKSLLIQL-KDGLLIGSACESGEIF 636

Query: 157  RAFFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRGYDRYRE--SQVVQLAYTHE 208
            RAF    S+   +++  F           +   +     +  +  RE   ++  L     
Sbjct: 637  RAFLEGKSEEEIEKIAAFYDFLEIMPVENNSFLIREGYLKDEEDLREINKKIYNLGKKLG 696

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
              +VAT+++ +          +L        V         P  Y +   EM+  F  L 
Sbjct: 697  KLVVATSDAHYCHPHQRVLRQILKHNQGYNDVEN------DPQLYFRTTDEMLKEFEYLG 750

Query: 269  E--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
            +    E  VE   + + +++   P+       + D  ++E  N    KA           
Sbjct: 751  KDACYEVVVENTNKIADMIEDVKPVPDETFPPKIDGAEEEIYNMTMKKAHE--------- 801

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
             I      +  + RL+ ELN I +  F+  +LI    +  +  +   VG  RGS   S+ 
Sbjct: 802  -IYGDPLPEIVKARLEKELNSIIKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVGSSLV 859

Query: 387  AYALTITDIDPLR-----------------------------------------FSLLFE 405
            A    IT+++PL                                            + FE
Sbjct: 860  ATMCGITEVNPLPPHYVCPNCKYSEFVTDGSVGCGYDLEDKNCPRCGKKLKKDGHDIPFE 919

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
             FL  D    PD D++F  D +    ++ +  +G   V +  T  ++  K A   V +  
Sbjct: 920  TFLGFDGDKEPDIDLNFSGDYQPIAHKFTEELFGQGYVFRAGTISTVAEKTAHGFVTKY- 978

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
                                              E +  +     +L +SQ   G+ R  
Sbjct: 979  ---------------------------------AEEKGLNLHPAEILRLSQGCTGVKRTT 1005

Query: 526  STHAAGIVIGDRP--LSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              H  G++I  R   +    P+     S    +  T F+   I    L+K D LG    T
Sbjct: 1006 GQHPGGLMIVPRDKEIFDFTPIQHPADSGDKSVITTHFDYHAI-SGRLLKLDILGHDDPT 1064

Query: 581  LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +++   D        VD   IP DD  T  + T+   LGI   +         G+     
Sbjct: 1065 VIRMLQDLTG-----VDPRSIPLDDKATMSIFTSTEALGISPEDID-CEVGTFGIPEFGT 1118

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIA 699
              +  ++   +P     +V  +   +G     +    L+   +   + VI  ++ +M   
Sbjct: 1119 RFVRQMLIETKPKTFAELVRISGLSHGTNVWTNNAQDLVRNGIATLKEVISTRDDIMLYL 1178

Query: 700  Q---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
                +    S    + +R+  G K ++E    +E  +              + +    K 
Sbjct: 1179 IQKGVPPKDSFRIMEDVRKGKGLKPEDE-QLLREHNVP-------------DWYIESCKK 1224

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIK 803
              Y F K+HAAAY +++++ A+ K HY   F A   T+  D+ +             KI+
Sbjct: 1225 ITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYFTVRADDFDYATILKGRDAIRQKIR 1284

Query: 804  --------------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAI 842
                                +   +     ++  P  +N    + F + D  +     A+
Sbjct: 1285 DLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAERFIIKDGGLLIPFNAL 1344

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
              VG   A+ I+EA  +  F S++D   R    K    +L
Sbjct: 1345 PNVGVAAAKSIVEARKEGKFLSVDDLIRRAKLNKQVIEIL 1384



 Score = 75.8 bits (185), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 30/71 (42%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             S   V L  H+  S ++   S   ++   A+    A+AITD   + +  E  + + + 
Sbjct: 298 TSSSKRVELHAHTKMSAMDAVCSAEELIKLAASMGHRAVAITDHGVVQAFPEAQEASKSC 357

Query: 66  GIQPIIGCQLD 76
            I+ I G +  
Sbjct: 358 NIKVIYGMECY 368


>gi|222097262|ref|YP_002531319.1| DNA polymerase iii polc [Bacillus cereus Q1]
 gi|221241320|gb|ACM14030.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
          Length = 1433

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 175/934 (18%), Positives = 320/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             ++LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMILLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L+ ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLNPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDVAKEIVVTNTQKIASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE ++             +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEE------------DMKSNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   DF +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 EFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIAITD     S  E       AGI+ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAITDHAVAQSFPEAYSAGKKAGIKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|228935132|ref|ZP_04097959.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
 gi|228824497|gb|EEM70302.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
          Length = 1433

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 175/934 (18%), Positives = 318/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDVAKEIVVTNTQKIASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE ++             +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEE------------DMKSNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   DF +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 EFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 67.7 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEEHRLLADETYVVFDVET 425


>gi|217961238|ref|YP_002339806.1| DNA polymerase III PolC [Bacillus cereus AH187]
 gi|229140459|ref|ZP_04269014.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
 gi|229197928|ref|ZP_04324644.1| DNA polymerase III polC-type [Bacillus cereus m1293]
 gi|217065194|gb|ACJ79444.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus AH187]
 gi|228585646|gb|EEK43748.1| DNA polymerase III polC-type [Bacillus cereus m1293]
 gi|228643020|gb|EEK99296.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
          Length = 1433

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 175/934 (18%), Positives = 319/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L+ ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLNPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDVAKEIVVTNTQKIASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE ++             +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEE------------DMKSNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   DF +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 EFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIAITD     S  E       AGI+ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAITDHAVAQSFPEAYSAGKKAGIKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|30263821|ref|NP_846198.1| DNA polymerase III PolC [Bacillus anthracis str. Ames]
 gi|47529245|ref|YP_020594.1| DNA polymerase III PolC [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186668|ref|YP_029920.1| DNA polymerase III PolC [Bacillus anthracis str. Sterne]
 gi|52141670|ref|YP_085159.1| DNA polymerase III PolC [Bacillus cereus E33L]
 gi|65321145|ref|ZP_00394104.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
            [Bacillus anthracis str. A2012]
 gi|165872624|ref|ZP_02217255.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0488]
 gi|170687849|ref|ZP_02879063.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0465]
 gi|170706900|ref|ZP_02897358.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0389]
 gi|190568456|ref|ZP_03021363.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis Tsiankovskii-I]
 gi|196042171|ref|ZP_03109454.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus NVH0597-99]
 gi|218904946|ref|YP_002452780.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus AH820]
 gi|227813274|ref|YP_002813283.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. CDC 684]
 gi|228947537|ref|ZP_04109827.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            monterrey BGSC 4AJ1]
 gi|229123331|ref|ZP_04252535.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
 gi|229601637|ref|YP_002868056.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0248]
 gi|254683475|ref|ZP_05147335.1| DNA polymerase III PolC [Bacillus anthracis str. CNEVA-9066]
 gi|254721996|ref|ZP_05183785.1| DNA polymerase III PolC [Bacillus anthracis str. A1055]
 gi|254756009|ref|ZP_05208040.1| DNA polymerase III PolC [Bacillus anthracis str. Vollum]
 gi|254759330|ref|ZP_05211355.1| DNA polymerase III PolC [Bacillus anthracis str. Australia 94]
 gi|301055308|ref|YP_003793519.1| DNA polymerase III subunit alpha [Bacillus anthracis CI]
 gi|30258465|gb|AAP27684.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. Ames]
 gi|47504393|gb|AAT33069.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. 'Ames Ancestor']
 gi|49180595|gb|AAT55971.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. Sterne]
 gi|51975139|gb|AAU16689.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
 gi|164711656|gb|EDR17202.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0488]
 gi|170128318|gb|EDS97187.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0389]
 gi|170668165|gb|EDT18914.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0465]
 gi|190560460|gb|EDV14438.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis Tsiankovskii-I]
 gi|196027023|gb|EDX65647.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus NVH0597-99]
 gi|218536830|gb|ACK89228.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus AH820]
 gi|227006508|gb|ACP16251.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. CDC 684]
 gi|228660107|gb|EEL15743.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
 gi|228812057|gb|EEM58388.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            monterrey BGSC 4AJ1]
 gi|229266045|gb|ACQ47682.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0248]
 gi|300377477|gb|ADK06381.1| DNA polymerase III subunit alpha [Bacillus cereus biovar anthracis
            str. CI]
          Length = 1433

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 175/934 (18%), Positives = 318/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDVAKEIVVTNTQKIASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE ++             +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEE------------DMKSNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   DF +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 EFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 67.7 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEEHRLLADETYVVFDVET 425


>gi|229157394|ref|ZP_04285472.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
 gi|228626121|gb|EEK82870.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
          Length = 1433

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 175/934 (18%), Positives = 318/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDVAKEIVVTNTQKIASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPACNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE ++             +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEE------------DMKSNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   DF +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 EFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|49478392|ref|YP_037879.1| DNA polymerase III PolC [Bacillus thuringiensis serovar konkukian
            str. 97-27]
 gi|49329948|gb|AAT60594.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
            konkukian str. 97-27]
          Length = 1433

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 175/934 (18%), Positives = 318/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDVAKEIVVTNTQKIASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE ++             +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEE------------DMKSNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   DF +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 EFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 67.7 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GC 73
           G 
Sbjct: 392 GV 393


>gi|167639871|ref|ZP_02398140.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0193]
 gi|177652036|ref|ZP_02934582.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0174]
 gi|254735856|ref|ZP_05193562.1| DNA polymerase III PolC [Bacillus anthracis str. Western North
            America USA6153]
 gi|167512272|gb|EDR87649.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0193]
 gi|172082405|gb|EDT67470.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0174]
          Length = 1433

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 175/934 (18%), Positives = 318/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDVAKEIVVTNTQKIASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCLKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE ++             +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEE------------DMKSNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   DF +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 EFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 67.7 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEEHRLLADETYVVFDVET 425


>gi|167635812|ref|ZP_02394121.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0442]
 gi|254739618|ref|ZP_05197312.1| DNA polymerase III PolC [Bacillus anthracis str. Kruger B]
 gi|167528769|gb|EDR91527.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0442]
          Length = 1433

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 175/934 (18%), Positives = 318/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDVAKEIVVTNTQKIASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE ++             +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEE------------DMKSNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   DF +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 EFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 67.7 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEEHRLLADETYVVFDVET 425


>gi|317129167|ref|YP_004095449.1| DNA polymerase III subunit alpha [Bacillus cellulosilyticus DSM 2522]
 gi|315474115|gb|ADU30718.1| DNA polymerase III, alpha subunit [Bacillus cellulosilyticus DSM
            2522]
          Length = 1434

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 190/923 (20%), Positives = 331/923 (35%), Gaps = 209/923 (22%)

Query: 84   KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG 143
            + T++           ++   T EG + L +LVS  ++ +   +  RI  S L E   +G
Sbjct: 596  EQTSKDDYKKQRPNHCIIFGKTKEGLKNLYKLVSLSHI-NYFYRVPRIPKSVLSE-HRDG 653

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQ- 202
            L++ +   +G +  A    S +  EK    +        Y+ +Q    Y+   E ++++ 
Sbjct: 654  LMIGSACDNGEVFDAMMQKSPEEVEKVAEFYD-------YLEVQPPSNYNHLVEKEIIRD 706

Query: 203  -------------LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                         L       +VAT N+ +L+EED     +L+A       +        
Sbjct: 707  ELALKDIIKKIIDLGDKLGKKVVATGNAHYLNEEDAIYRKILIASQGG---ANPLNRTSL 763

Query: 250  PDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            P  + ++  EM+S FS LPE       + NTV +A     I  +   +    IE   D++
Sbjct: 764  PKVHFRSTDEMLSCFSFLPEEKAKEIVITNTVAVANEIDDIKPIPDDLYTPKIEGADDEM 823

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +  E +  R +++ G                +    RL+ ELN I    FS  +LI    
Sbjct: 824  R--ELSYGRARSIYG------------ETLPKIVEDRLEKELNSIISNGFSVIYLISQKL 869

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------------- 400
            ++ +  +   VG  RGS   S  A    IT+++PL                         
Sbjct: 870  VKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPECHHSVFFDDGSVGSGFD 928

Query: 401  ------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                               + FE FL      +PD D++F  + +     Y +  +G E 
Sbjct: 929  LPDKECEKCGTQYNKDGQDIPFETFLGFKGDKVPDIDLNFSGEYQATAHNYTKELFGEEY 988

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            V +  T G++  K A   V                            +   DD++ R   
Sbjct: 989  VYKAGTIGTVAEKTAYGFV----------------------------KGYEDDNQLR--- 1017

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQ 557
            L    +DRL+       G+ R    H  GI++      +    P+     D  S+   T 
Sbjct: 1018 LRGAEIDRLVS---GCTGVKRTTGQHPGGIIVVPDYLDIYDFTPIQYPADDAESEWRTTH 1074

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL------ 611
            ++   I    L+K D LG    T+++   D        +D   IP DD E Y L      
Sbjct: 1075 YDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKDIPVDDPEVYKLFSGTES 1128

Query: 612  --------LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
                    +   GT GI +  +  +RQ LE  +P    +++ +  L     +        
Sbjct: 1129 LGVTEEQIMCKTGTYGIPEFGTRFVRQMLEETKPSSFSELVQISGLSHGTDVWLN----- 1183

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
              N  + I +   ++  ++     +++Y    +    L    +    + +R+  G     
Sbjct: 1184 --NAADLIANGTCVLKDVIGCRDDIMVY----LIYKGLEHSLAFKIMEFVRKGKG----- 1232

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
                 +E +I    K+G+      +   +      Y F K+HAAAY +++ + A+ K HY
Sbjct: 1233 ----LQEDWIEEMKKHGVPDWYIGSCLRI-----KYMFPKAHAAAYVLMAVRIAYFKVHY 1283

Query: 784  PVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS-------------- 820
            P+ F AA  T+  D+ E          I+K  ++     +   P                
Sbjct: 1284 PILFYAAYFTVRADDFEIDTMVKGSASIRKRIEEIYAKGLDATPKEKSVVTVLELALEMC 1343

Query: 821  -----------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   +F V  + +     AI GVGT  A +I +A  D  F S E+  
Sbjct: 1344 ERGMSFKKVDLYKSKATEFIVDGDSLIPPFNAINGVGTNAAINIEKAREDGEFLSKENLR 1403

Query: 870  SRVDSKKLNRRVLESLVFAGALD 892
             R    K+ + VLE+L   G L+
Sbjct: 1404 ER---SKITKTVLENLDDHGCLE 1423



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 3/106 (2%)

Query: 3   QYLEKSPS---FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
           Q ++K+P     V L VHS+ S ++   S++  +++      PAIAITD   L +  E  
Sbjct: 322 QRIDKAPDGEKRVELHVHSAMSQMDAVTSISKYVEQANKWGHPAIAITDHAVLQAFPEAY 381

Query: 60  QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                 G++ + G + ++         N           IV  V T
Sbjct: 382 SAGKKTGVKILYGVEANLVDDGVPIAYNPVDRDLLDETYIVFDVET 427


>gi|228922572|ref|ZP_04085872.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            huazhongensis BGSC 4BD1]
 gi|228837001|gb|EEM82342.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            huazhongensis BGSC 4BD1]
          Length = 1433

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 175/934 (18%), Positives = 318/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDKAKEVVVTNTQKIASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPACNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE             ++ +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEW------------EDDMKSNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   DF +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 DFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 68.1 bits (165), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|229092858|ref|ZP_04223992.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
 gi|228690480|gb|EEL44263.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
          Length = 1433

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 175/934 (18%), Positives = 318/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDVAKEIVVTNTQKIASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE ++             +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEE------------DMKSNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   DF +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 EFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 67.7 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEEHRLLADETYVVFDVET 425


>gi|154686075|ref|YP_001421236.1| DNA polymerase III PolC [Bacillus amyloliquefaciens FZB42]
 gi|154351926|gb|ABS74005.1| PolC [Bacillus amyloliquefaciens FZB42]
          Length = 1437

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 172/920 (18%), Positives = 317/920 (34%), Gaps = 165/920 (17%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++      +    Q N  M               LL     G + L +LVS  ++     
Sbjct: 582  LKDAAEKDIFYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFKLVSISHI-QYFY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  RI  S L +   EGL++ +    G +       S +  E     +        +++ 
Sbjct: 641  RVPRIPRSQLNKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLEVQPPEVYR 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              L + L R     +   + + +L      P+VAT N  +L++ED     +L++      
Sbjct: 700  HLLQLELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIYRKILISSQGG-- 757

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L   +A E  V+  ++ + ++    PI      
Sbjct: 758  -ANPLNRHELPKVHFRTTDEMLEAFSFLGAEKAKEIVVDNTQKVASMIDEIKPIKDDLYT 816

Query: 298  KECDDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
             + D   +E  E +  R +++ G E+             +    R++ EL  I    F+ 
Sbjct: 817  PKIDGADEEIREMSYQRARSIYGEEL------------PEIVEARIEKELKSIIGHGFAV 864

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------- 398
             +LI    ++ +  +   VG  RGS   S+ A    IT+++PL                 
Sbjct: 865  IYLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLAPHYVCPSCRYSEFFND 923

Query: 399  ------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                       + FE FL      +PD D++F  + +     Y 
Sbjct: 924  GSVGSGFDLPDKSCPSCGTPLKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHNYT 983

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            +  +G + V +  T G++  K A   V                                 
Sbjct: 984  KVLFGEDNVYRAGTIGTVAEKTAYGYVKGYAGDH-------------------------- 1017

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDV 549
                    +    +DRL+   Q   G+ R    H  GI++      +    P+       
Sbjct: 1018 -----NLHMRGAEIDRLV---QGCTGVKRTTGQHPGGIIVVPDYMDIYDFSPIQFPADAT 1069

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
             S+   T F+   I    L+K D LG    T+++   D        +D   IP DD E  
Sbjct: 1070 GSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVM 1123

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             +     +LG+ + E  G +    G+       +  ++   +P     +V  +   +G +
Sbjct: 1124 KIFQGTESLGVTE-EQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHGTD 1182

Query: 670  KIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
              + +   LI     E   VI  ++ +M +  +  G   S A  +   + K      + +
Sbjct: 1183 VWLGNAQELIHNNTCELSEVIGCRDDIM-VYLIYQGLEPSLAFKIMEFVRKGKGLTPEWE 1241

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E          + K    N +    K   Y F K+HAAAY +++ + A+ K H+ + + 
Sbjct: 1242 EE----------MKKNNVPNWYIDSCKKIKYMFPKAHAAAYVLMAVRIAYFKVHHALLYY 1291

Query: 789  AASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVN----------------- 822
            AA  T+  D+ +          I+    D     +   P   N                 
Sbjct: 1292 AAYFTVRADDFDIDTMIKGSTAIRAVMDDISSKGLDASPKEKNLLTVLELALEMCERGYS 1351

Query: 823  --------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                    +   +F +  N +     +I G+GT  A +I++A  +  F S ED   R   
Sbjct: 1352 FQKVDLYRSSASEFIIDGNSLIPPFNSIPGLGTNAALNIVKARKEGEFLSKEDLQKR--- 1408

Query: 875  KKLNRRVLESLVFAGALDCF 894
             K+++ +LE L   G L+  
Sbjct: 1409 GKVSKTILEYLDRHGCLESL 1428



 Score = 75.8 bits (185), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++    +  ++++       AIA+TD   + S  +    A   GI+ I 
Sbjct: 335 VELHLHSPMSQMDAVTGIGKLVEQAKKWGHEAIALTDHAVVQSFPDAYSAAKKHGIKMIY 394

Query: 72  GC 73
           G 
Sbjct: 395 GM 396


>gi|308173621|ref|YP_003920326.1| DNA polymerase III subunit alpha [Bacillus amyloliquefaciens DSM 7]
 gi|307606485|emb|CBI42856.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens DSM 7]
 gi|328553447|gb|AEB23939.1| DNA polymerase III PolC [Bacillus amyloliquefaciens TA208]
 gi|328911762|gb|AEB63358.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens LL3]
          Length = 1437

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 173/920 (18%), Positives = 318/920 (34%), Gaps = 165/920 (17%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++      +    Q N  M               LL     G + L +LVS  ++     
Sbjct: 582  LKDAAEKDIFYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFKLVSISHI-QYFY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  RI  S L +   EGL++ +    G +       S +  E     +        +++ 
Sbjct: 641  RVPRIPRSQLDKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLEVQPPEVYR 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              L + L R     +   + + +L      P+VAT N  +L++ED     +L++      
Sbjct: 700  HLLQLELVRDEKALKEIITNITKLGEKLNKPVVATGNVHYLNDEDKIYRKILVSSQGG-- 757

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L   +A E  VE  ++ + +++   PI      
Sbjct: 758  -ANPLNRHELPKVHFRTTDEMLDAFSFLGAEKAKEIVVENTQKVASMIEEIKPIKDDLYT 816

Query: 298  KECDDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
             + D   +E  E +  R +++ G E+             +    R++ EL  I    F+ 
Sbjct: 817  PKIDGADEEIREMSYQRARSIYGEEL------------PEIVEARIEKELKSIIGHGFAV 864

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------- 398
             +LI    ++ +  +   VG  RGS   S+ A    IT+++PL                 
Sbjct: 865  IYLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLAPHYVCPSCRYSEFFND 923

Query: 399  ------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                       + FE FL      +PD D++F  + +     Y 
Sbjct: 924  GSVGSGFDLPDKSCPSCGTPLKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHNYT 983

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            +  +G + V +  T G++  K A   V                                 
Sbjct: 984  KVLFGEDNVYRAGTIGTVAEKTAYGYVKGYAGDH-------------------------- 1017

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDV 549
                    +    +DRL+   Q   G+ R    H  GI++      +    P+       
Sbjct: 1018 -----NLHMRGAEIDRLV---QGCTGVKRTTGQHPGGIIVVPDYMDIYDFSPIQFPADAT 1069

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
             S+   T F+   I    L+K D LG    T+++   D        +D   IP DD E  
Sbjct: 1070 GSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVM 1123

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             +     +LG+ + E  G +    G+       +  ++   +P     +V  +   +G +
Sbjct: 1124 KIFQGTESLGVTE-EQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHGTD 1182

Query: 670  KIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
              + +   LI     E   VI  ++ +M +  +  G   S A  +   + K      + +
Sbjct: 1183 VWLGNAQELIHNNTCELSEVIGCRDDIM-VYLIYQGLEPSLAFKIMEFVRKGKGLTPEWE 1241

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E          + K    N +    K   Y F K+HAAAY +++ + A+ K H+ + + 
Sbjct: 1242 EE----------MKKNNVPNWYIDSCKKIKYMFPKAHAAAYVLMAVRIAYFKVHHALLYY 1291

Query: 789  AASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVN----------------- 822
            AA  T+  D+ +          I+    D     +   P   N                 
Sbjct: 1292 AAYFTVRADDFDIDTMIKGSTAIRAVMDDISSKGLDASPKEKNLLTVLELALEMCERGYS 1351

Query: 823  --------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                    +   +F +  N +     +I G+GT  A +I++A  +  F S ED   R   
Sbjct: 1352 FQKVDLYRSSASEFIIDGNSLIPPFNSIPGLGTNAALNIVKAREEGEFLSKEDLQKR--- 1408

Query: 875  KKLNRRVLESLVFAGALDCF 894
             K+++ +LE L   G L+  
Sbjct: 1409 GKVSKTILEYLDRHGCLESL 1428



 Score = 75.8 bits (185), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++    +  ++++       AIA+TD   + S  +    A   GI+ I 
Sbjct: 335 VELHLHSPMSQMDAVTGIGKLVEQAKKWGHEAIALTDHAVVQSFPDAYSAAKKHGIKMIY 394

Query: 72  GC 73
           G 
Sbjct: 395 GM 396


>gi|228916455|ref|ZP_04080021.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            pulsiensis BGSC 4CC1]
 gi|228843034|gb|EEM88116.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            pulsiensis BGSC 4CC1]
          Length = 1433

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 175/934 (18%), Positives = 318/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDIGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDVAKEIVVTNTQKIASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPACNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE ++             +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEE------------DMKSNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   DF +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 EFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 67.7 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTSVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|229006094|ref|ZP_04163782.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
 gi|228755170|gb|EEM04527.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
          Length = 1433

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 181/943 (19%), Positives = 326/943 (34%), Gaps = 194/943 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHNQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  Y +  +EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVYFRTTNEMLDCFSFLGEEKAKEIVVTNTQKVASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPNCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V                            +  A D 
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV----------------------------KGYASDH 1013

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                  + +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1014 NL---TIRNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSVGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        VD   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGVDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE +++            +      + +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEEE------------MRNNNVPSWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVDAMVKGSASIRARIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   DF +  + +     AI G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDTLIPPFNAIPGLGTNAALSIVEARGNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLL 902
             F S ED   R    KL+R ++E L   G L D    +++ L 
Sbjct: 1394 EFLSKEDLQQR---SKLSRTIIEYLDSQGCLGDLPDKNQLSLF 1433



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTSVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GC 73
           G 
Sbjct: 392 GV 393


>gi|134299812|ref|YP_001113308.1| DNA polymerase III subunit alpha [Desulfotomaculum reducens MI-1]
 gi|134052512|gb|ABO50483.1| DNA polymerase III catalytic subunit, PolC type [Desulfotomaculum
            reducens MI-1]
          Length = 1426

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 173/888 (19%), Positives = 318/888 (35%), Gaps = 165/888 (18%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + +LV    G + L +L++  +L     +  RI    L +   EGL++ +   +G   +
Sbjct: 604  HVTILVKDEVGLKNLYQLITLSHLR-YFHRQPRIPRRELVKY-REGLLIGSACEAGEFYQ 661

Query: 158  AFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHEL 209
            A    +SQ   + + +F      + L  +   +   +  G +  +E   ++V L     +
Sbjct: 662  ALMAGASQEELEDIASFYDYLEIQPLGNNEFMIRTGQVNGEEDLKEINRKIVALGSKLGI 721

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT +  FL+ ED     +LMA          D        Y K   EM+  FS L  
Sbjct: 722  PVVATGDVHFLNPEDEVYRRILMA---GKGFDDADN---QAPLYFKTTEEMLKEFSYLGR 775

Query: 270  --ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
              A +  V   R  + ++Q   PI         +  +++  +    +A       L    
Sbjct: 776  ETAFQVVVSNPRNIASMIQAFKPIPDTLHPPYIEGAEQQITDMTLQRARELYGEPL---- 831

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                   +  +QR+D EL  I    F+  +LI    ++ +  +   VG  RGS   S+ A
Sbjct: 832  ------PEVVQQRVDKELKSIIGNGFAVLYLIAHKLVKKSLDDGYLVG-SRGSVGSSLVA 884

Query: 388  YALTITDIDPLR-----------------------------------------FSLLFER 406
                IT+++PL                                            + FE 
Sbjct: 885  TFTNITEVNPLPPHYRCPNCLNSEFLMDGSAGCGADMPDKNCPKCGTNYIKDGHDIPFEV 944

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL  D   +PD D++F  D +    +Y +  +G + V +  T G++  K A   V     
Sbjct: 945  FLGFDGDKVPDIDLNFSGDYQPRAHKYTEELFGKDYVYRAGTIGTIAEKTAFGFVKNYF- 1003

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
                                             E R        +  +     G+ R   
Sbjct: 1004 ---------------------------------EERNIKKRSAEMKRLVLGCAGVKRTTG 1030

Query: 527  THAAGIVIGDRPLS--QLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  G+++    L      P+ R   DV+SD   T F+   I    L+K D LG    T+
Sbjct: 1031 QHPGGLMVVPNSLDVHMFTPVQRPADDVKSDTRTTHFDYHSIHD-SLVKLDILGHDDPTV 1089

Query: 582  LQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   D        V+   IP DD +T  L  +   LG+   +    +     +     +
Sbjct: 1090 IRMLEDL-----TSVNAREIPLDDPKTMSLFASTDALGVTPEDIRS-QVGTYAIPEFGTK 1143

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             +  ++   +P     +V  +   +G +  ++    LI     +    I  ++ +M +  
Sbjct: 1144 FVRQMLVDTKPTTFSELVRISGFSHGTDVWLNNAQDLIKEGTCKLSEAISARDDIM-VYL 1202

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +  G    +A  +   + K         KE         G+ +    +  ++      Y 
Sbjct: 1203 IYQGLPPKQAFKIMEGVRKGK-----GVKEEDAEAMRSQGVPEWYIESCRKI-----KYM 1252

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQ---- 807
            F K+HA AY +++++ AW K + P  F AA  T+  D+ +         KIK+  +    
Sbjct: 1253 FPKAHATAYVMMAFRIAWFKVYRPEAFYAAYFTVRADDFDAELMVSGPNKIKQVIEEIEE 1312

Query: 808  --------------------DARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVG 846
                                +A    I+I+P ++       F +    +      ++GVG
Sbjct: 1313 KGNAASQKEKNMLTILEVALEANCRGIKILPVNLEKSDATKFLITPEGLLSPFGGLQGVG 1372

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + A++I+ A    PF S++D  +R    K+++ V+E L   G L+  
Sbjct: 1373 ASAAKNIVAAREQAPFTSIDDLRNRA---KISKTVIEVLQNHGCLNNL 1417



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++  +S  + + + AA   PA+AITD   + +  E    A  AGI+ I 
Sbjct: 327 VELHLHTKMSSMDSVMSAVDAVKQAAAWGHPAVAITDHGVVQAFPEAYAAAKKAGIKLIY 386

Query: 72  GC 73
           G 
Sbjct: 387 GV 388


>gi|228986961|ref|ZP_04147087.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            tochigiensis BGSC 4Y1]
 gi|228772739|gb|EEM21179.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            tochigiensis BGSC 4Y1]
          Length = 1433

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 175/934 (18%), Positives = 318/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDVAKEIVVTNTQKIASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE ++             +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEE------------DMKSNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   DF +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 DFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|256750786|ref|ZP_05491671.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
            CCSD1]
 gi|256750369|gb|EEU63388.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
            CCSD1]
          Length = 1407

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 175/902 (19%), Positives = 326/902 (36%), Gaps = 172/902 (19%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            V  + +LV   +G + L E++S+  L +   ++ R+  S L  +  EGLI+ +    G +
Sbjct: 583  VYHVTILVKDQKGLRNLYEIISKSNL-EYFHRTPRLPKSLLISM-REGLIIGSACEQGEV 640

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTH 207
             RA   N  +   + +++F      + +  +   +     +  +  RE   ++  L   +
Sbjct: 641  FRAIVSNLEEKKLENIISFYDYLEVQPVGNNEFLIEKGEVKSVEELREINRKIYLLGKKY 700

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
               +VAT +  FL   D     +LMA          DR    P  Y K   EM+  F  L
Sbjct: 701  NKLVVATGDVHFLDPWDDIYRKILMA---GKGYKDADR---QPPLYFKTTDEMLKEFEYL 754

Query: 268  PE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
             E  A E  ++   + + +++   PI     +     + +  E ELR   +         
Sbjct: 755  GEEVAKEIVIDNPNKIADLVEEVKPI----PDGTFPPVIEGAEEELRRLTLDKAHEIYGD 810

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                     +  + RLD ELN I    ++  ++I    +  + K+   VG  RGS   S+
Sbjct: 811  PL------PEIVQNRLDRELNSIINNGYAVMYIIAQKLVSKSLKDGYLVG-SRGSVGSSL 863

Query: 386  TAYALTITDIDPLR-----------------------------------------FSLLF 404
             A    IT+++PL                                          F + F
Sbjct: 864  VATMSGITEVNPLPPHYVCPNCKYSEFITDGSYGGGVDMPDKACPHCGTLMKKDGFDIPF 923

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  +    PD D++F  + +    +Y +  +G   V +  T G+L  K A   V + 
Sbjct: 924  EVFLGFEGDKEPDIDLNFSGEYQPIAHKYTEELFGKGHVFRAGTIGTLADKTAYGYVKKY 983

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                                              R   +    + RL   +    G+ R 
Sbjct: 984  F-------------------------------EERNLIVHKSEIKRL---TVGCTGVKRT 1009

Query: 525  ASTHAAGIVIGDRP--LSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GI++  +   +    P+        +D+  T F+   I    L+K D LG    
Sbjct: 1010 TGQHPGGIMVVPKDKSIYDFTPIQHPADAEDTDVITTHFDYHSI-SGRLLKLDILGHDDP 1068

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            T+++   D             IP DD +T  L T+  +L I   E +       G+    
Sbjct: 1069 TVIRMLEDLTGINAR-----EIPLDDKKTMSLFTSVESLEIDPEELN-TPVGTLGLPEFG 1122

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQI 698
             + +  ++   RP     +V  +   +G +  ++    +I   +   + VI  ++ +M  
Sbjct: 1123 TKFVRQMLIDTRPTTFAELVRISGLSHGTDVWLNNAQDIIREGIATLKEVISTRDDIMLY 1182

Query: 699  AQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
                 +    S    + +R+  G   +EE+++ +        K+G+      +  ++   
Sbjct: 1183 LISKGMDKKLSFKIMENVRKGKG-VTQEEIEEMR--------KHGVPNWFIESCQKI--- 1230

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFC 806
               Y F K+HA AY +++++ A+ K HYP  F A   T+  D+          + IK   
Sbjct: 1231 --KYMFPKAHAVAYVIMAFRIAYFKVHYPEAFYATYFTVRADDFNLDIVLKGKDSIKNAI 1288

Query: 807  QDARQFNIQIMPPS-------------------------VNTPCVDFKVGDNRIYYSLAA 841
            ++         P                             +  V F + +  +   L +
Sbjct: 1289 KEIEAKGNNASPKEKSLLTVLEVALEMYLRGFKFINVDLYKSDAVKFLITEEGLLPPLNS 1348

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQ 900
            ++GVG   A+ I +   +  F S+EDF +R    K+++ V+E L   G L D    +++ 
Sbjct: 1349 LEGVGIQAAKTIAQERENGKFLSVEDFRNRT---KVSKTVIEILKQHGCLIDLPESNQLS 1405

Query: 901  LL 902
            L 
Sbjct: 1406 LF 1407



 Score = 72.3 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S   ++ + A     AIAITD   + +  E  + +   G++ I 
Sbjct: 309 VELHLHTQMSSMDAVASATEVIKRAAKWGHKAIAITDHAVVQAFPEAMEASSKYGVKVIY 368

Query: 72  GC 73
           G 
Sbjct: 369 GV 370


>gi|228954094|ref|ZP_04116123.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar kurstaki
            str. T03a001]
 gi|228805660|gb|EEM52250.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar kurstaki
            str. T03a001]
          Length = 1433

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 174/934 (18%), Positives = 319/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDKAKEVVVTNTQKIASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPACNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE ++             +      + +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEE------------DMKNNNVPDWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   +F +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAALSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 DFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 68.1 bits (165), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|47569095|ref|ZP_00239784.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus G9241]
 gi|47554257|gb|EAL12619.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus G9241]
          Length = 1433

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 175/934 (18%), Positives = 318/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDVAKEIVVTNTQKIASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE ++             +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEE------------DMKSNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   DF +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 DFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|196036920|ref|ZP_03104304.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus W]
 gi|228928866|ref|ZP_04091898.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
 gi|195990475|gb|EDX54459.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus W]
 gi|228830673|gb|EEM76278.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
          Length = 1433

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 175/934 (18%), Positives = 318/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGGTLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDVAKEIVVTNTQKIASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE ++             +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEE------------DMKSNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   DF +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 EFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 67.7 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEEHRLLADETYVVFDVET 425


>gi|228992546|ref|ZP_04152473.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
 gi|228767180|gb|EEM15816.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
          Length = 1433

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 181/943 (19%), Positives = 326/943 (34%), Gaps = 194/943 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  Y +  +EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVYFRTTNEMLDCFSFLGEEKAKEIVVTNTQKVASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYTMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPNCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V                            +  A D 
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV----------------------------KGYASDH 1013

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                  + +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1014 NL---TIRNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSVGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        VD   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGVDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE +++            +      + +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEEE------------MRNNNVPSWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVDAMVKGSASIRARIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   DF +  + +     AI G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDTLIPPFNAIPGLGTNAALSIVEARGNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLL 902
             F S ED   R    KL+R ++E L   G L D    +++ L 
Sbjct: 1394 EFLSKEDLQQR---SKLSRTIIEYLDSQGCLGDLPDKNQLSLF 1433



 Score = 67.7 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTSVSKLVSQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GC 73
           G 
Sbjct: 392 GV 393


>gi|228998594|ref|ZP_04158181.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
 gi|228761062|gb|EEM10021.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
          Length = 1433

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 181/943 (19%), Positives = 326/943 (34%), Gaps = 194/943 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  Y +  +EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVYFRTTNEMLDCFSFLGEEKAKEIVVTNTQKVASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPNCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V                            +  A D 
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV----------------------------KGYASDH 1013

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                  + +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1014 NL---TIRNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSVGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        VD   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGVDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE +++            +      + +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEEE------------MRNNNVPSWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVDAMVKGSASIRARIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   DF +  + +     AI G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDTLIPPFNAIPGLGTNAALSIVEARGNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLL 902
             F S ED   R    KL+R ++E L   G L D    +++ L 
Sbjct: 1394 EFLSKEDLQQR---SKLSRTIIEYLDSQGCLGDLPDKNQLSLF 1433



 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+  ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTSVAKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GC 73
           G 
Sbjct: 392 GV 393


>gi|326791606|ref|YP_004309427.1| DNA polymerase III subunit alpha [Clostridium lentocellum DSM 5427]
 gi|326542370|gb|ADZ84229.1| DNA polymerase III, alpha subunit [Clostridium lentocellum DSM 5427]
          Length = 1468

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 191/951 (20%), Positives = 335/951 (35%), Gaps = 183/951 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            + F +     G+  +        + D ++++       PT   ++L V    G   L  L
Sbjct: 598  VRFIEMLQEKGVTTL------DAINDMVEISPDYIKKLPTYHGVIL-VKNEIGRINLNRL 650

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L D   +  R+  S +Q+   EGLI+ +   +G I +A      +    RL++F 
Sbjct: 651  VSASHL-DYFNRRPRMPKSLIQK-HREGLIIGSACEAGEIFQAILREKEETELARLVSFY 708

Query: 176  KLFGDRLYVNLQRHRGYD----------RYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
                 +   N       D          R    +VV+L   +  P+VAT +  FL  ED 
Sbjct: 709  DYLEIQPIGNNSFMLRSDKYTAETEEDLRQYNKRVVELGEHYNKPVVATCDVHFLDPEDE 768

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSF 283
                ++MA                P  YL+   EM+  F  L   +A E  +   +  + 
Sbjct: 769  IYRRIIMAGKGFKDADD------QPPVYLRTTEEMLEEFKYLGSEKAKEVVITNTQLINE 822

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
             ++  +P+LP     E  D          +KA       L               +RL+ 
Sbjct: 823  QIEKISPVLPYKCPPEIPDSDATLTQICYDKAHEIYGPELH----------PVVVERLER 872

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL----- 398
            ELN I    F+  ++I    +  +  +   VG  RGS   S  A    IT+++PL     
Sbjct: 873  ELNSIISNGFAVMYIIAQKLVWDSNDHGYLVG-SRGSVGSSFAATMSGITEVNPLAPHYI 931

Query: 399  ----------------------------------------RFSLLFERFLNPDRMSMPDF 418
                                                       + FE FL       PD 
Sbjct: 932  CPQCHYVDFESEEVRAYAGRSGCDMPDATCPKCGHELLKEGHDIPFETFLGFKGDKEPDI 991

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  D + +  +YV+  +G  +  +  T G+L  K A   V +               
Sbjct: 992  DLNFSGDYQAKAHKYVEVIFGEGKAFRAGTIGTLAEKTAFAYVYKYY------------- 1038

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GD 536
                                 E R        +  I++   G+ R    H  GI++   D
Sbjct: 1039 ---------------------EERDIHKRRAEMKRIAEGCTGVKRTTGQHPGGIIVVPHD 1077

Query: 537  RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            R + +   +     DV + +  T F    I+   L+K D LG    T++++  D      
Sbjct: 1078 RDIYEFTAVQHPANDVMTPIITTHFEYHSIDH-NLLKLDILGHDDPTMIRRLEDLTG--- 1133

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              +D   I  DD +   L  +   LGI   +  G++    G+     + +I ++   +P 
Sbjct: 1134 --IDAKTIKLDDKDVMSLFHSTTALGIKPEDIGGIKLGSLGIPEFGTDFVIQMLLDAKPQ 1191

Query: 654  PIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSE 709
               ++V  +   +G +  + +   LI+        VI  ++ +M       +  G S + 
Sbjct: 1192 SFSDLVRISGLSHGTDVWLGNAQTLIEEGRGTISTVICTRDDIMTYLINQGMDKGLSFTI 1251

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             + +R+  G K + E             +NG+        +    K   Y F K+HAAAY
Sbjct: 1252 MESVRKGKGLKPEWEEA---------MLENGVPD-----WYIWSCKKIKYMFPKAHAAAY 1297

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLE---------------------------------- 795
             +++++ AW K  YP+ +  A  ++                                   
Sbjct: 1298 VMMAWRIAWYKIFYPLAYYTAFFSIRASAFSYETMCLGKERLEYHMKELMLKGKENQSAK 1357

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
              +  K  +  Q+     I+ MP  +       F++ D +I  SL++I G+G   A  ++
Sbjct: 1358 EQDTLKDMRIVQEMYARGIEFMPIDITRADDKRFQIIDGKIMPSLSSIDGLGEKAAEAVV 1417

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            EA  D PF S EDF +R    K     +  L   G  D    +++ LL ++
Sbjct: 1418 EAVKDGPFLSKEDFRNRAKVSKTVTDKMSELGILG--DLTESNQLDLLSAM 1466



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++  + ++ ++D+  A   PAIAITD   L  A   +    +      +
Sbjct: 356 VELHLHTMMSDMDSVVDIHQMIDRAKAWGMPAIAITDHGCL-QAFPIANHCVSKDEPFKV 414

Query: 72  GCQLDIDMQDNLK 84
              ++    D+LK
Sbjct: 415 IYGVEAYFVDDLK 427


>gi|229019012|ref|ZP_04175854.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
 gi|229025258|ref|ZP_04181678.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
 gi|228736011|gb|EEL86586.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
 gi|228742340|gb|EEL92498.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
          Length = 1433

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 176/934 (18%), Positives = 318/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+I+ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGIIVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T E P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLEKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDKAKEIVVTNTQKVASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKESEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPTCNVSYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKI 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE ++             +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEE------------DMKNNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   +F +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATEFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 DFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|224476387|ref|YP_002633993.1| DNA polymerase III PolC [Staphylococcus carnosus subsp. carnosus
            TM300]
 gi|222420994|emb|CAL27808.1| homolog of DNA polymerase III, alpha subunit [Staphylococcus carnosus
            subsp. carnosus TM300]
          Length = 1437

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 173/946 (18%), Positives = 325/946 (34%), Gaps = 206/946 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +    +      N  ++N+          I +LV   +G + L ++VS   L+    
Sbjct: 582  LKQVEELGVTNHKDINQSLSNEDAYKRARPSHITILVQNQDGLKNLFKIVSES-LVTYYY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         E+    +         L+ 
Sbjct: 641  RTPRIPRSLLDEY-REGLLIGTACDEGEVFTAVMQKDQSQVERIAKYYDYIEVQPPALYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          ++++      +P+VAT N  +L+E D  A  +L+A      
Sbjct: 700  DLIDRELIRDNKTMEEIYERLLKAGEAVNVPIVATGNVHYLNEHDSIARKILIASQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILP 293
            ++        P+ + +   EM+  F  L E       +ENT  +A R   ++ +   +  
Sbjct: 760  LN----RSTLPEAHFRTTDEMLDAFHFLGEEKAHEIVVENTQALADRIERVVPIKDKLYT 815

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
              +E   +        E+R  +                   Q    RL+ EL  I    F
Sbjct: 816  PRMEGANE--------EIREMSYENARKLYGDDL------PQIVIDRLEKELESIIGNGF 861

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------- 400
            S  +LI    ++ +  +   VG  RGS   S  A    IT+++PL               
Sbjct: 862  SVIYLISQRLVKKSLNDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPKCKKSEFF 920

Query: 401  ---------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
                                        + FE FL      +PD D++F  + + E   Y
Sbjct: 921  NDGSVGSGFDLPDKKCECGAEMIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPEAHNY 980

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVS 488
             +  +G ++V +  T G++  K A   V      + +    ++VDRL K           
Sbjct: 981  TKVLFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEVDRLVK----------- 1029

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY 546
                                           G+ R    H  GI++      +    P+ 
Sbjct: 1030 ----------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPVQ 1061

Query: 547  RDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
                        T F+   I    ++K D LG    T+++   D        +D   IP 
Sbjct: 1062 YPADDQSSPWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPV 1115

Query: 604  DDHETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            DD ET                ++   GT G+ +  +  +RQ LE  +P    +++ +  L
Sbjct: 1116 DDKETMRIFSTPESLGVTEEEIMCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGL 1175

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
                 +                 +   L+     +  GVI  ++ +M +  + +G   S 
Sbjct: 1176 SHGTDVWLG--------------NAQDLVRSGTCDLSGVIGCRDDIM-VYLMYAGLEPSL 1220

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            A  +  A+ K    + + ++           + +    + +    K   Y F K+HAAAY
Sbjct: 1221 AFKIMEAVRKGKGLQEEWEEV----------MKENNVPDWYLDSCKKIKYMFPKAHAAAY 1270

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------------------------- 800
             +++ + A+ K HYP+ + A+  T+   + +                             
Sbjct: 1271 VLMAMRIAYFKVHYPLYYYASYFTVRASDFDLITMIKDKEGIKTVVKDMYSKYMELGKKE 1330

Query: 801  ----KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                 + +   +      ++ P S+      +F +  + +     ++ G+G   A+ I+E
Sbjct: 1331 KDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVE 1390

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            A  + PF S ED   +     L+++V+E L   G+L      + QL
Sbjct: 1391 AREEGPFLSKEDLNKKA---GLSQKVIEYLDELGSLPGL-PDKAQL 1432



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++G  ++ + + + A    PAIA+TD + + +  +    A    I+ + 
Sbjct: 336 VELHLHTAMSQMDGINNIGDYVAQAAKWGHPAIAVTDHSVVQAFPDAFAAAEKNDIKMLY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G +  +                     +V  V T  G   
Sbjct: 396 GMEGMLVDDGVPIAYKPTDRILKDATYVVFDVET-TGLSN 434


>gi|229098287|ref|ZP_04229234.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
 gi|228685185|gb|EEL39116.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
          Length = 1433

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 174/934 (18%), Positives = 319/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L +ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDQEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDKAKEIVVTNTQKIASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPTCNVSYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKI 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE ++             +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEE------------DMKSNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   +F +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATEFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 DFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|23099048|ref|NP_692514.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus iheyensis
            HTE831]
 gi|32469727|sp|Q8EQU6|DPO3_OCEIH RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|22777276|dbj|BAC13549.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus iheyensis
            HTE831]
          Length = 1428

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 184/926 (19%), Positives = 337/926 (36%), Gaps = 176/926 (19%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q ++  ++   ++ N  M               L+  T EG + L +LVSR ++ D   
Sbjct: 574  VQRLVEKEISNHLELNNHMGENNAYQRSRPYHCTLIAQTEEGLKNLYKLVSRAHI-DFFY 632

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            +  R+  S LQ+   EG+++ T    G +       S + AE+    +        Y+ +
Sbjct: 633  RVPRLPRSVLQK-HREGILVGTACDKGEVFETMMQKSEEEAEQVADFYD-------YIEV 684

Query: 187  QRHRGYDRYRESQVVQ--------------LAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            Q    Y    E  +VQ              L    +  +VAT N  +L E D +   +L+
Sbjct: 685  QPPENYTHLIEKDLVQNESQILDILRKLVNLGDKMKKTVVATGNVHYLHEHDKQYRQILI 744

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAP 290
                   +S        PD   +  +EM++ F  L E  A E  V+  ++ +  ++  +P
Sbjct: 745  GSQAGNPLS----RHKLPDTPFRTTTEMINCFHFLGEKKANEIVVDNTQKLTDSIEEISP 800

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +         +      E E+R+      +    +         Q    RL+ EL  I  
Sbjct: 801  VKDGLFTPNIEGA----EQEMRDLCYNKAKEVYGEPV------PQIVVDRLEKELESIIG 850

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------ 398
              F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL            
Sbjct: 851  NGFAVIYLISQKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLVPHYVCKHCHHH 909

Query: 399  -----------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D +  
Sbjct: 910  EFFTDGSVASGFDLPDKDCPGCGKGLTKDGQDIPFETFLGFKGDKVPDIDLNFSGDYQPR 969

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G + V +  T G++  K A   V                            
Sbjct: 970  AHNYTKELFGIDNVYRAGTIGTVAEKTAYGYV---------------------------- 1001

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY- 546
            +  A D++F      +  VDRL+   Q   G+ R    H  GI++   D+ +    P+  
Sbjct: 1002 KGYASDNQF---VYKNAEVDRLV---QGCTGVKRTTGQHPGGIIVVPSDKEIYDFTPIQF 1055

Query: 547  --RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
               D  S+   T F+   I    L+K D LG    T+++   D        +D   IP D
Sbjct: 1056 PADDRNSEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGMDPKNIPTD 1109

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D E   + +   +LG+   + +  +    G+     + +  ++   +P     +++ +  
Sbjct: 1110 DEEVMKIFSGTESLGVTPEQIN-CKTGTLGVPEFGTKFVRQMLEDTKPKTFAELLIISGL 1168

Query: 665  KNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             +G +  + +   LI+  + +   VI  ++ +M +  +  G   S A  +   + K    
Sbjct: 1169 SHGTDVWLGNAQELINDGICQLPDVIGCRDDIM-VYLMHKGLDPSMAFTIMEFVRKGK-- 1225

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
                 K+ +I    K+ +      +  ++      Y F K+HAAAY +++ + A+ K H+
Sbjct: 1226 ---GLKDEWIDEMKKHAVPDWYIESCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHH 1277

Query: 784  PVEFLAASMTLEMDNV---------EKIKKFCQDARQFNIQIMPPSVN------------ 822
            P+ F AA  T+  D+          + I+K  ++         P   N            
Sbjct: 1278 PILFYAAYFTVRADDFELDTMIKGSDAIRKRIEEITVKGNDASPKEKNLLTVLEISLEMC 1337

Query: 823  -------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                         +   DF V  + +     A+ G+GT  A +I++A  +  F S ED  
Sbjct: 1338 ERGFSFKKVDLYQSSATDFIVEGDSLLPPFNAVDGLGTNAALNIVKAREEGEFLSKEDLR 1397

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFG 895
             R    K+++ VLE L   G L+   
Sbjct: 1398 ER---SKISKTVLEYLDNHGCLEGME 1420



 Score = 78.5 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 1   LTQYLEKSPS---FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE 57
           ++Q ++ +      V L  H++ S ++  +S   ++++ A     AIAITD   +    +
Sbjct: 314 VSQRMDDASEDKKRVELHTHTTMSQMDAVVSPEALVEQAAKWGHKAIAITDHAGVQGFPD 373

Query: 58  FSQKACAAGIQPIIGC 73
                   G++ + G 
Sbjct: 374 AHNAGKKHGVKVLYGV 389


>gi|218898970|ref|YP_002447381.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus G9842]
 gi|228902321|ref|ZP_04066478.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
 gi|228966763|ref|ZP_04127807.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
            str. T04001]
 gi|218545449|gb|ACK97843.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus G9842]
 gi|228792862|gb|EEM40420.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
            str. T04001]
 gi|228857290|gb|EEN01793.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
          Length = 1433

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 173/922 (18%), Positives = 323/922 (35%), Gaps = 169/922 (18%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHLTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDKAKEVVVTNTQKVASLIGDVRPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKDCPTCNVAYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
             +   TLG+ + + +  +    G+     + +  ++   +P     +V  +   +G +  
Sbjct: 1122 FSGPETLGVTEEQIN-CKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVW 1180

Query: 672  V-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEM-D 726
            + + + LI         VI  ++ +M       L    +    + +R+   K + EE  D
Sbjct: 1181 LGNANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVRKG--KGVPEEWED 1238

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              K   + G              +    K   Y F K+HAAAY +++ + A+ K H+ + 
Sbjct: 1239 DMKGNNVPG-------------WYIDSCKKIKYMFPKAHAAAYVLMAVRIAYFKVHFALL 1285

Query: 787  FLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----------------- 820
            F AA  T+  D+ +          I+    +  Q  +   P                   
Sbjct: 1286 FYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCERG 1345

Query: 821  --------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                      +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R 
Sbjct: 1346 YSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR- 1404

Query: 873  DSKKLNRRVLESLVFAGALDCF 894
               K+++ ++E L   G L   
Sbjct: 1405 --SKVSKTIIEYLDSQGCLGDL 1424



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|229117304|ref|ZP_04246682.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
 gi|228666204|gb|EEL21668.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
          Length = 1435

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 174/934 (18%), Positives = 319/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 580  LKDVIEKGFEYHNQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 638

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 639  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 697

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L +ED     +L++      
Sbjct: 698  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDQEDAMYRKILVSSQGG-- 755

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 756  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDKAKEIVVTNTQKVASLIGDVHPVKDDLYT 814

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 815  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 864

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 865  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 923

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 924  VGSGFDLPDKECPTCNVSYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKI 983

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 984  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1019

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1020 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGA 1069

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1070 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1123

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1124 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1183

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1184 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1229

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE ++             +        +    K   Y F K+HAAAY +++ 
Sbjct: 1230 KG--KGVPEEWEE------------DMKSNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1275

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1276 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLT 1335

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   +F +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1336 VLEMTLEMCERGYSFQKVDLYRSHATEFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNG 1395

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1396 DFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1426



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 334 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 394 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 427


>gi|228909642|ref|ZP_04073465.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
 gi|228849931|gb|EEM94762.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
          Length = 1435

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 173/922 (18%), Positives = 323/922 (35%), Gaps = 169/922 (18%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 580  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHLTLLATSDVGLKNLYKLVSYSHL-NYFY 638

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 639  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 697

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 698  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 755

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 756  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDKAKEVVVTNTQKVASLIGDVRPVKDDLYT 814

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 815  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 864

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 865  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 923

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 924  VGSGFDLPDKDCPTCNVAYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 983

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 984  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1019

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1020 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGA 1069

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1070 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1123

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
             +   TLG+ + + +  +    G+     + +  ++   +P     +V  +   +G +  
Sbjct: 1124 FSGPETLGVTEEQIN-CKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVW 1182

Query: 672  V-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEM-D 726
            + + + LI         VI  ++ +M       L    +    + +R+   K + EE  D
Sbjct: 1183 LGNANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVRKG--KGVPEEWED 1240

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              K   + G              +    K   Y F K+HAAAY +++ + A+ K H+ + 
Sbjct: 1241 DMKGNNVPG-------------WYIDSCKKIKYMFPKAHAAAYVLMAVRIAYFKVHFALL 1287

Query: 787  FLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----------------- 820
            F AA  T+  D+ +          I+    +  Q  +   P                   
Sbjct: 1288 FYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCERG 1347

Query: 821  --------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                      +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R 
Sbjct: 1348 YSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR- 1406

Query: 873  DSKKLNRRVLESLVFAGALDCF 894
               K+++ ++E L   G L   
Sbjct: 1407 --SKVSKTIIEYLDSQGCLGDL 1426



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 334 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 394 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 427


>gi|253682510|ref|ZP_04863307.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum D str. 1873]
 gi|253562222|gb|EES91674.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum D str. 1873]
          Length = 1443

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 174/893 (19%), Positives = 323/893 (36%), Gaps = 170/893 (19%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
               +++L     G + L +L+S   L D   +  R+  S L E   EGLI+ +   +G +
Sbjct: 618  TYHLIILAKNQVGLKNLYKLISYSNL-DYFFRKPRMPKS-LIEQYKEGLIIGSACEAGEV 675

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTH 207
             +A     SQ   K ++ F      + +  +   +     +  ++ +E   ++  L   +
Sbjct: 676  YKAVLEGKSQEELKEIIKFYDYLEIQPIMNNEFMLKKGIVKSEEQLKEVNRKIYNLGKEN 735

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
             LP+VAT +  FL  +D +  ++LM     +           P  YLK  +EM+  F  L
Sbjct: 736  GLPIVATGDVHFLDPKDAKFREILMKGQGFSDAED------QPPLYLKTTNEMLKEFEYL 789

Query: 268  P--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
               E  E  +   ++ +  ++V  PI       + +  +++  N    KA          
Sbjct: 790  GKDECKEVVIYNPQKIAEEIEVIKPIPDETFPPKIEGAEEDIRNMTLEKAH--------- 840

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
             +I      +    RL+ ELN I    ++  +LI    +  + K+   VG  RGS   S+
Sbjct: 841  -SIYGNPLPKVVHDRLEKELNSIINNGYAVLYLIAHKLVAKSLKDGYLVG-SRGSVGSSL 898

Query: 386  TAYALTITDIDPLR-----------------------------------------FSLLF 404
             A    IT+++ L                                            + F
Sbjct: 899  VATMSDITEVNGLPPHYVCPNCKNSEFFTDGSVSSGADLPPKNCPNCGSEYNRNGHDIPF 958

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  +    PD D++F  D + ++ RY +  +G     +  T G++  K A   V + 
Sbjct: 959  ETFLGFNGDKEPDIDLNFSGDNQGDIHRYTEVLFGKGHTFKAGTIGTIADKTAYGFVKKY 1018

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L                                 +   ++   ++RL   +Q   G+ R 
Sbjct: 1019 LDE-------------------------------KNLIVSQAEIERL---TQGCTGVKRT 1044

Query: 525  ASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D LG    
Sbjct: 1045 SGQHPGGIMVVPSDNEIYNFCPIQHPADDADSDIITTHFDYHSI-SGRLLKLDILGHDDP 1103

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            T+L+   D        +D   IP  D +   L T+   LG+   E         G+    
Sbjct: 1104 TVLRMLKDITG-----LDPITIPIGDEKVLSLFTSPEALGVTAEELE-CPVGCYGIPEFG 1157

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQI 698
             + +  ++   +P    ++V  +   +G +  ++     I       +  I  ++ +M +
Sbjct: 1158 TKFVRQMLVDTQPKTFSDLVRISGLSHGTDVWLNNAQYFIKEGYTTLKDCIATRDDIM-V 1216

Query: 699  AQLLSGYSLSEADVLRRAMGKKI--KEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
              L  G    EA  +   + K     EE +              + +    + +    K 
Sbjct: 1217 YLLHKGLPPKEAFTIMEKVRKGKGLTEEHEAL------------MREHKVPDWYIESCKK 1264

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN-----------------V 799
              Y F K HA AY +++ + A+ K +YP  + A   T+   +                 +
Sbjct: 1265 IKYMFPKGHAVAYVMMAVRIAYYKVYYPQAYYATYFTVRGIDDFDADLIVKGEDVVKRKM 1324

Query: 800  EKIKKFCQ-----------------DARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAA 841
            ++I                      +  + NI+ +   +  +    F + ++ I   ++A
Sbjct: 1325 DEINALGNNATQKDKGLLTNLELAFEMYKRNIKFLKVDIYKSHPTKFLIENDDIRPPISA 1384

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            + GVGT  A+ I EA  D  F S ED   R    K+++ V+E+L   G L+  
Sbjct: 1385 LAGVGTNAAKSIAEAKKDGEFISKEDLRKR---SKVSKTVIEALSEHGCLEGL 1434



 Score = 86.2 bits (212), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++G  S   ++++ A    PA+AITD   + +  E    A    I+ I 
Sbjct: 345 VELHLHTQMSAMDGMSSAKALIERAAKWGHPAVAITDHGVVQAYPEAMDAAKKYNIKVIY 404

Query: 72  GC 73
           G 
Sbjct: 405 GV 406


>gi|331090692|ref|ZP_08339541.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330400106|gb|EGG79757.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 1487

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 178/938 (18%), Positives = 330/938 (35%), Gaps = 171/938 (18%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +      I  + G      M       N           +++L     G   L  L
Sbjct: 608  VKFVEMLKEREITTLKGVNEFGAM-------NPDAIRKMPAHHVIILAKNDVGRVNLYTL 660

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL---- 171
            VS  +L   G+   RI  S L     EGLI+ +   +G + +A   + S+    ++    
Sbjct: 661  VSMSHLKYFGRM-PRIPKSELNRY-REGLIVGSACEAGELYQAILNDKSEEQIAKIVNFY 718

Query: 172  --LTFKKLFGDRLYVN-----LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
              L  + L  +   +          +        ++V+L    +  +V T +  FL  +D
Sbjct: 719  DYLEIQPLGNNAFMLESERISNVNTKEDLIQINKKIVKLGEEFQKMVVGTCDVHFLDPDD 778

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCS 282
                 ++M     +              YL+   EM+S FS L  A    + I    R +
Sbjct: 779  EVYRRIIMTGKGFSDADD------QAPLYLRTTEEMMSEFSYLGSAKAEEIVITNPNRIA 832

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
             ++   +P+ P     +C  + +  + ELR+           +             +RL+
Sbjct: 833  DMIDPISPVRP----DKCPPVIQNSDQELRDICYEKAHSMYGENL------PDMVVERLE 882

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             ELN I    F+  ++I    +  + ++   VG  RGS   S  A    IT+++PL    
Sbjct: 883  RELNSIISNGFAVMYIIAQKLVWKSVEDGYLVG-SRGSVGSSFVATMAGITEVNPLSPHY 941

Query: 400  ------------------------------------------FSLLFERFLNPDRMSMPD 417
                                                      F + FE FL       PD
Sbjct: 942  YCKKCHYSDFTSDEVRAYSGLSGWDMPDKKCPVCGEPLAKDGFDIPFETFLGFKGNKEPD 1001

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  D +    +Y +  +G  +  +  T G+L  K A   V                
Sbjct: 1002 IDLNFSGDYQSNAHKYTEVIFGTGQTFRAGTIGTLADKTAYGFVKNYY------------ 1049

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD- 536
                                 R++R     ++R++E      G+ R    H  GI++   
Sbjct: 1050 -------------------EERDSRKRKCEIERIVE---GCTGIRRSTGQHPGGIIVLPH 1087

Query: 537  -RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
               ++   P+         D+  T F+   I+   L+K D LG    T+++   D +   
Sbjct: 1088 GENINSFTPVQHPANDMTTDIITTHFDYHSIDH-NLLKLDILGHDDPTIIRMLEDLITDI 1146

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             G K D + IP DD +   L      LGI   +  G      G+     + +I +V   +
Sbjct: 1147 TGEKFDATKIPLDDPDVMALFAGTEVLGIKPEDIGGCPVGCLGIPEFGTDFVIQMVVDTK 1206

Query: 652  PGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSL 707
            P  I +++  +   +G +  + +   LI          I  ++ +M       L S  S 
Sbjct: 1207 PKTISDLIRISGLSHGTDVWLNNAQTLIQEGKATISTAICTRDDIMTYLINKGLDSEKSF 1266

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            +  + +R+ +  K K    K+   +     ++G+ +    +  ++      Y F K+HAA
Sbjct: 1267 TIMERVRKGLVAKGK---CKEWPEYKKDMLEHGVPEWYIGSCEKI-----KYMFPKAHAA 1318

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIKKF------------- 805
            AY +++Y+ A+ K +YP+ + AA  ++              +K++ +             
Sbjct: 1319 AYVMMAYRIAYCKVNYPLAYYAAYFSIRASAFSYEIMCQGKDKLEFYLRDYKKRSDSLSK 1378

Query: 806  -----------CQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHI 853
                        Q+      + +P  + T   D F++ D ++   L +I+G+G   A  +
Sbjct: 1379 KEQDVLKDMKIVQEMYARGFEFLPLDIYTAKADKFQIIDGKLMPPLNSIEGMGDKAAEAV 1438

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              AS D P+ S +DF  R    K    ++  L   G L
Sbjct: 1439 ELASKDGPYLSRDDFRQRTKVSKTVIDLMADLGMFGNL 1476



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
           V L  H+  S ++G   +  I+ +       AIAITD   + +  + 
Sbjct: 363 VELHCHTKMSDMDGVSEVKAIVKRAHDWGHKAIAITDHGVVQAFPDA 409


>gi|206972660|ref|ZP_03233601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus AH1134]
 gi|218234060|ref|YP_002368619.1| DNA polymerase III PolC [Bacillus cereus B4264]
 gi|228960034|ref|ZP_04121698.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            pakistani str. T13001]
 gi|229047504|ref|ZP_04193094.1| DNA polymerase III polC-type [Bacillus cereus AH676]
 gi|229071316|ref|ZP_04204539.1| DNA polymerase III polC-type [Bacillus cereus F65185]
 gi|229081073|ref|ZP_04213583.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
 gi|229111289|ref|ZP_04240842.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
 gi|229129094|ref|ZP_04258067.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
 gi|229152017|ref|ZP_04280212.1| DNA polymerase III polC-type [Bacillus cereus m1550]
 gi|229180094|ref|ZP_04307438.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
 gi|229191987|ref|ZP_04318957.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
 gi|296504313|ref|YP_003666013.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
 gi|206732417|gb|EDZ49598.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus AH1134]
 gi|218162017|gb|ACK62009.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus B4264]
 gi|228591538|gb|EEK49387.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
 gi|228603303|gb|EEK60780.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
 gi|228631366|gb|EEK88000.1| DNA polymerase III polC-type [Bacillus cereus m1550]
 gi|228654331|gb|EEL10196.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
 gi|228672065|gb|EEL27356.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
 gi|228702117|gb|EEL54593.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
 gi|228711770|gb|EEL63722.1| DNA polymerase III polC-type [Bacillus cereus F65185]
 gi|228723751|gb|EEL75106.1| DNA polymerase III polC-type [Bacillus cereus AH676]
 gi|228799550|gb|EEM46503.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            pakistani str. T13001]
 gi|296325365|gb|ADH08293.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
          Length = 1433

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 174/934 (18%), Positives = 318/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDKAKEVVVTNTQKIASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPACNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE ++             +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEE------------DMKNNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   +F +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAALSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 DFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 68.1 bits (165), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|220931624|ref|YP_002508532.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
 gi|219992934|gb|ACL69537.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
          Length = 1397

 Score =  446 bits (1147), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/939 (18%), Positives = 325/939 (34%), Gaps = 180/939 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            + F       GI+ + G           +++ +           V+     +G + +  L
Sbjct: 542  INFLSNIKNEGIETVPGIN---------RLSTKINWRELPTYHTVIFAKNKQGLKDIYRL 592

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L +   +  RI  S L +   + LI+ +   +G + R+   N       ++ +F 
Sbjct: 593  VSESHL-NYFYRKPRILKSHLIQC-RKNLIIGSACEAGQLYRSIINNKPYREIIKIASFY 650

Query: 176  KLF------GDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
                      ++  V  +     +      Q+ +L      P+VAT +  FL  ED    
Sbjct: 651  DYLEIQPTGNNKFLVGNKVESIDELEKINYQIYKLGKKLNKPVVATCDVHFLDPEDDIYR 710

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQ 286
             VL A          D        Y +  +EM+  FS L +  A E  +E   + S  ++
Sbjct: 711  KVLQAGQGY------DEAEEQAPLYFRTTNEMLEEFSYLGKKAAREVVIENPAKISDQIE 764

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               P+       E +       +++R                          +RL+ EL 
Sbjct: 765  ELKPLPDGLFAPEIEGAN----DQIRKMTYQRAHELYGD------PLPSIIEERLEKELK 814

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I    ++  +LI    ++ + ++   VG  RGS   S+ A    IT+++PL        
Sbjct: 815  AIIDNGYAVIYLISHKLVKKSLEDGYLVG-SRGSVGSSLVATMCEITEVNPLPPHYRCPR 873

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                              F + FE F+  +   +PD D++F  +
Sbjct: 874  CKQVEFVNDENTGVGADLPDKNCPHCGTRYVKDGFDIPFEVFMGFEGDKVPDIDLNFSGE 933

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             + E+ +Y +  +G   V +  T  ++  + A   V                        
Sbjct: 934  YQGEIHKYTEELFGSNYVFRAGTISTIAKRTAFGFV------------------------ 969

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLV 543
                +   DD+  R   L    +DRL+   +   G+ R    H  G+++  +   +    
Sbjct: 970  ----KGYLDDNGLR---LNKAEIDRLV---KGCTGVKRTTGQHPGGLMVVPKAYDIHDFS 1019

Query: 544  PMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+ R       D+  T F+   I    ++K D LG    T ++   D        V+   
Sbjct: 1020 PIQRPANDQETDVITTHFDYHSI-SGRILKLDLLGHDDPTTIRMLQDLTG-----VNPHD 1073

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD +T  + ++   LG+   E  G      G+       +  ++   RP     +V 
Sbjct: 1074 IPLDDPDTMDIFSSTDPLGVSPEEI-GTVVGTLGIPEFGTSFVRQMLVDTRPTTFAELVR 1132

Query: 661  YNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRA 716
             +   +G +  + +   LI         VI  ++ +M       L  G S    + +R+ 
Sbjct: 1133 ISGLSHGTDVWLNNAQDLIKSGKARLSEVISVRDDIMNYLIQKGLEPGKSFWIMEHVRKG 1192

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
              K + EE             +  + +    + +    K   Y F K+HAAAY +++++ 
Sbjct: 1193 --KGLTEE------------EEQYMREHNVPDWYIESCKKIKYMFPKAHAAAYVMMAFRI 1238

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEK---------------------------------IK 803
            A+ K HYP  F     T++ D+ +                                  + 
Sbjct: 1239 AYFKVHYPEAFYTTYFTIKADDFDAHMINQGYDHIIEVKKNLEARGNDMTAKEKGILTVL 1298

Query: 804  KFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            +   +A    I+ +P     +    FK+ D  +   L +++G+G++ A  I     + PF
Sbjct: 1299 EIVIEAMARGIEFLPVDLYKSDATKFKLTDKGLLPPLVSLQGLGSSAAEKIAVTRQEAPF 1358

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             S+ED  +R    K    +LE     G+LD     R QL
Sbjct: 1359 SSVEDLVNRTRISKTVVEILE---EHGSLDGL-PERDQL 1393



 Score = 78.5 bits (192), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 38/94 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L +H+  S L+  + +  ++++ A     AIAITD   + +  +  Q      I+ + 
Sbjct: 299 IELHLHTKMSALDSVVDVEKVIERAAEWGHSAIAITDHGVVQAYPDAYQAGKKHNIKILY 358

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G +  +       + N       +   +V  + T
Sbjct: 359 GLEAYMVDDGEPIILNPPDVSLESATFVVFDLET 392


>gi|229104380|ref|ZP_04235049.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
 gi|228679078|gb|EEL33286.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
          Length = 1433

 Score =  446 bits (1147), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/934 (18%), Positives = 319/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L +ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDQEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDKAKEIVVTNTQKVASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPTCNVSYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKI 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE ++             +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEE------------DMKSNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   +F +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATEFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 DFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHAAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|312127164|ref|YP_003992038.1| DNA polymerase III subunit alpha [Caldicellulosiruptor hydrothermalis
            108]
 gi|311777183|gb|ADQ06669.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
            hydrothermalis 108]
          Length = 1402

 Score =  446 bits (1147), Expect = e-122,   Method: Composition-based stats.
 Identities = 165/880 (18%), Positives = 301/880 (34%), Gaps = 168/880 (19%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
                +LV   +G + L +LVS  +L +   +  RI  S L ++  +GL++ +   SG I 
Sbjct: 579  YHATILVKNQQGLKNLYKLVSYSHL-EYFYKRPRIPKSLLIQL-KDGLLIGSACESGEIF 636

Query: 157  RAFFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRGYDRYRE--SQVVQLAYTHE 208
            RAF    S+   +++  F           +   +     +  +  RE   ++  L     
Sbjct: 637  RAFLEGKSEEEIEKIAAFYDFLEIMPVENNSFLIREGYLKDEEDLREINKKIYNLGKKLG 696

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
              +VAT+++ +          +L    H+      +     P  Y +   EM+  F  L 
Sbjct: 697  KLVVATSDAHYCHPHQRVLRQIL---KHNQGYDDVEND---PQLYFRTTDEMLKEFDYLG 750

Query: 269  EA--LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
                 E  VE   + + +++   PI       + +  ++E  N    KA           
Sbjct: 751  NESCYEVVVENTNKIADMIEDIKPIPDETFPPKIEGAEEEIYNMTMKKAHE--------- 801

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
             I      +  R RL+ ELN I +  F+  +LI    +  +  +   VG  RGS   S+ 
Sbjct: 802  -IYGDPLPEIVRARLEKELNSIIKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVGSSLV 859

Query: 387  AYALTITDIDPLR-----------------------------------------FSLLFE 405
            A    IT+++PL                                            + FE
Sbjct: 860  ATMCGITEVNPLPPHYVCPNCKYSEFITDGSVGCGYDLEDKNCPRCGKKLKKDGHDIPFE 919

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
             FL  D    PD D++F  D +    ++ +  +G   V +  T  ++  K A   V +  
Sbjct: 920  TFLGFDGDKEPDIDLNFSGDYQPIAHKFTEELFGQGYVFRAGTISTVAEKTAHGFVTKY- 978

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
                                              E +  +     +L +SQ   G+ R  
Sbjct: 979  ---------------------------------AEEKGLNLHPAEILRLSQGCTGVKRTT 1005

Query: 526  STHAAGIVIGDRP--LSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              H  G++I  R   +    P+     S    +  T F+   I    L+K D LG    T
Sbjct: 1006 GQHPGGLMIVPRDKEIFDFTPIQHPADSGDKSVITTHFDYHAI-SGRLLKLDILGHDDPT 1064

Query: 581  LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +++   D        VD   IP DD +T  + T+   LGI   +         G+     
Sbjct: 1065 VIRMLQDLTG-----VDPRSIPLDDKDTMSIFTSTEALGISPEDID-CEVGTFGIPEFGT 1118

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIA 699
              +  ++   +P     +V  +   +G     +    L+   +   + VI  ++ +M   
Sbjct: 1119 RFVRQMLIETKPKTFAELVRISGLSHGTNVWTNNAQDLVRNGIATLKEVISTRDDIMLYL 1178

Query: 700  Q---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
                +    S    + +R+  G K ++E    +   +              + +    K 
Sbjct: 1179 IQKGVPPKDSFRIMEDVRKGKGLKPEDE-QLLRAHNVP-------------DWYIESCKK 1224

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIK 803
              Y F K+HAAAY +++++ A+ K HY   F A   T+  D+ +             KI+
Sbjct: 1225 ITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYFTVRADDFDYATILKGRDAIRQKIR 1284

Query: 804  --------------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAI 842
                                +   +     ++  P  +N    + F + D  +     A+
Sbjct: 1285 DLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAERFIIKDGGLLIPFNAL 1344

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
              VG   A+ I+EA  +  F S++D   R    K    +L
Sbjct: 1345 PNVGVAAAKSIVEARKEGRFLSVDDLIRRAKLNKQVIEIL 1384



 Score = 74.2 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 38/94 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   S   I+   A+    A+AITD   + +  E  + + +  I+ I 
Sbjct: 304 VELHAHTKMSAMDAVCSAEEIIKLAASMGHRAVAITDHGVVQAFPEAQEASKSCNIKVIY 363

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G +  +       + N  +        +V+ + T
Sbjct: 364 GMECYLIDDGAPVVYNPKEGQGFDSTFVVVDIET 397


>gi|30021907|ref|NP_833538.1| DNA polymerase III PolC [Bacillus cereus ATCC 14579]
 gi|229146389|ref|ZP_04274760.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
 gi|81433857|sp|Q819Y5|DPO3_BACCR RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|29897463|gb|AAP10739.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
 gi|228637022|gb|EEK93481.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
          Length = 1435

 Score =  446 bits (1147), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/934 (18%), Positives = 318/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 580  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 638

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 639  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 697

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 698  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 755

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 756  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDKAKEVVVTNTQKIASLIGDVHPVKDDLYT 814

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 815  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 864

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 865  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 923

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 924  VGSGFDLPDKECPACNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 983

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 984  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1019

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1020 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGA 1069

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1070 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1123

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1124 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1183

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1184 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1229

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE ++             +        +    K   Y F K+HAAAY +++ 
Sbjct: 1230 KG--KGVPEEWEE------------DMKNNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1275

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1276 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLT 1335

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   +F +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1336 VLEMTLEMCERGYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAALSIVEARKNG 1395

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1396 DFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1426



 Score = 68.1 bits (165), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 334 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 394 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 427


>gi|331269632|ref|YP_004396124.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925]
 gi|329126182|gb|AEB76127.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum BKT015925]
          Length = 1443

 Score =  446 bits (1147), Expect = e-122,   Method: Composition-based stats.
 Identities = 177/897 (19%), Positives = 322/897 (35%), Gaps = 178/897 (19%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
               +++L     G + L +L+S   L D   +  R+  S L E   EGLI+ +   +G +
Sbjct: 618  TYHLIILAKNQVGLKNLYKLISYSNL-DYFFRKPRMPKS-LIEQYKEGLIIGSACEAGEV 675

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTH 207
             +A     SQ   K+++ F      + +  +   +     +  ++ +E   ++  L   +
Sbjct: 676  YKAVLEGKSQEELKQMIKFYNYLEIQPIMNNEFMLKKGIVKSEEQLKEVNRKIYNLGKEN 735

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
             LP+VAT +  FL  +D +  ++LM     +           P  YLK  +EM+  F  L
Sbjct: 736  GLPVVATGDVHFLDPKDAKFREILMKGQGFSDAED------QPPLYLKTTNEMLKEFQYL 789

Query: 268  PE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
             +       + N  +IA     +  +     P  IE   +DI        RN  +     
Sbjct: 790  GDDACKEVVIYNPQKIAEEVEVVKPIPDETFPPKIEGAEEDI--------RNMTLEKA-- 839

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                 +I      +    RL+ ELN I    ++  +LI    +  + K+   VG  RGS 
Sbjct: 840  ----YSIYGNPLPKVVHDRLEKELNSIINNGYAVLYLIAHKLVAKSLKDGYLVG-SRGSV 894

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S+ A    IT+++ L                                           
Sbjct: 895  GSSLVATMSDITEVNGLPPHYVCPNCKNSEFFTDGSVSSGADLPPKKCPNCGDEYNRNGH 954

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL  +    PD D++F  D + ++ RY +  +G     +  T G++  K A   
Sbjct: 955  DIPFETFLGFNGDKEPDIDLNFSGDNQGDIHRYTEVLFGKGHTFKAGTIGTIADKTAYGF 1014

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V + L                                 +   ++   V+RL   +Q   G
Sbjct: 1015 VKKYLDE-------------------------------KNLIVSQAEVERL---TQGCTG 1040

Query: 521  LYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + R +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D LG
Sbjct: 1041 VKRTSGQHPGGIMVVPSDNEIYNFCPIQHPADDSNSDIITTHFDYHSI-SGRLLKLDILG 1099

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
                T+L+   D        +D   IP  D +   L T+   LGI + E         G+
Sbjct: 1100 HDDPTVLRMLKD-----TTGLDPITIPIGDEKVLSLFTSPEALGITEEELE-CPVGCYGI 1153

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQ 694
                 + +  ++   +P    ++V  +   +G +  ++     I       +  I  ++ 
Sbjct: 1154 PEFGTKFVRQMLVDTQPKTFSDLVRISGLSHGTDVWLNNAQYFIKEGYTTLKDCIATRDD 1213

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKI--KEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            +M +  L  G    EA  +   + K     EE +              + +    + +  
Sbjct: 1214 IM-VYLLHKGLPPKEAFTIMEKVRKGKGLTEEHEAL------------MREHKVPDWYIE 1260

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN-------------- 798
              K   Y F K HA AY +++ + A+ K +YP  + A   T+   +              
Sbjct: 1261 SCKKIKYMFPKGHAVAYVMMAVRIAYYKVYYPQAYYATYFTVRGIDDFDADLIVKGEDVV 1320

Query: 799  ---VEKIKKFCQ-----------------DARQFNIQIMPPSV-NTPCVDFKVGDNRIYY 837
               +++I                      +  + NI+ +   V  +    F + ++ I  
Sbjct: 1321 KRKMDEINALGNNVTQKDKGLLTNLELAFEMYKRNIKFLKVDVYKSHPTKFLIENDDIRP 1380

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             ++++ GVGT  A+ I EA  +  F S ED   R    K+++ V+E+L   G L   
Sbjct: 1381 PISSLAGVGTNAAKSIAEAREEGEFISKEDLRKR---SKVSKTVVEALSEHGCLKGL 1434



 Score = 87.3 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 2   TQYLEKSPSF----VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE 57
           T  LEK  +F    V L +H+  S ++G  S  +++++ A    PA+AITD   + +  +
Sbjct: 331 TSKLEKMDTFEEKRVELHLHTQMSAMDGMSSAKSLIERAAKWGHPAVAITDHGVVQAYPD 390

Query: 58  FSQKACAAGIQPIIGC 73
               A    I+ I G 
Sbjct: 391 AMDAAKKYNIKIIYGV 406


>gi|75760862|ref|ZP_00740876.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
            israelensis ATCC 35646]
 gi|74491646|gb|EAO54848.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
            israelensis ATCC 35646]
          Length = 1435

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 173/922 (18%), Positives = 323/922 (35%), Gaps = 169/922 (18%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 580  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHLTLLATSDVGLKNLYKLVSYSHL-NYFY 638

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 639  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 697

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 698  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 755

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 756  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDKAKEVVVTNTQKVASLIGDVRPVKDDLYT 814

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 815  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 864

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 865  LISHKLVKKSLVDGYLVG-XRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 923

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 924  VGSGFDLPDKDCPTCNVAYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 983

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 984  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1019

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1020 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGA 1069

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1070 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1123

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
             +   TLG+ + + +  +    G+     + +  ++   +P     +V  +   +G +  
Sbjct: 1124 FSGPETLGVTEEQIN-CKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVW 1182

Query: 672  V-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEM-D 726
            + + + LI         VI  ++ +M       L    +    + +R+   K + EE  D
Sbjct: 1183 LGNANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVRKG--KGVPEEWED 1240

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              K   + G              +    K   Y F K+HAAAY +++ + A+ K H+ + 
Sbjct: 1241 DMKGNNVPG-------------WYIDSCKKIKYMFPKAHAAAYVLMAVRIAYFKVHFALL 1287

Query: 787  FLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----------------- 820
            F AA  T+  D+ +          I+    +  Q  +   P                   
Sbjct: 1288 FYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCERG 1347

Query: 821  --------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                      +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R 
Sbjct: 1348 YSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR- 1406

Query: 873  DSKKLNRRVLESLVFAGALDCF 894
               K+++ ++E L   G L   
Sbjct: 1407 --SKVSKTIIEYLDSQGCLGDL 1426



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 334 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 394 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 427


>gi|70726651|ref|YP_253565.1| DNA polymerase III PolC [Staphylococcus haemolyticus JCSC1435]
 gi|123660050|sp|Q4L5W6|DPO3_STAHJ RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|68447375|dbj|BAE04959.1| DNA polymerase III alpha chain PolC-type [Staphylococcus haemolyticus
            JCSC1435]
          Length = 1438

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 176/943 (18%), Positives = 325/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +      N K++N+          + L+V T EG + L ++VS   L+    
Sbjct: 582  VQQMKELGVTNHKDINQKLSNEDAYKRARPTHVTLIVQTQEGLKNLFKIVS-ASLVKYYY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EG+++ T    G +  A         EK    +        KL+ 
Sbjct: 641  RTPRIPRSLLNEY-REGILVGTACDEGELFTAVMQRDQSEVEKIAKYYDFIEVQPPKLYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          ++++   +  +P++AT N+ +L E D  A  +L+A      
Sbjct: 700  DLIDRELIRDTETLYEIYERILKAGESTGIPVIATGNAHYLYEHDAIARKILIASQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM+  F  L E  A E  V+     +  ++   PI  +   
Sbjct: 760  LN----RSTLPEAHFRTTDEMLDEFHFLGEEKAHEIVVKNTNELADRIEKVIPIKDQLFT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               D        E+R  +    +    +         Q    RL+ EL  I    FS  +
Sbjct: 816  PRMDGAN----EEIRELSYTNAKKLYGEDL------PQIVIDRLEKELASIIGNGFSVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFDDGS 924

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKQCSTCGAELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 985  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK-------------- 1030

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDV 549
                                        G+ R    H  GI++      +    P+    
Sbjct: 1031 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1065

Query: 550  RSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQSASWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1119

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            ET                +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 ETMQIFSSPESLGVTEEEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1180 TDVWLG--------------NAQELIRSGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1224

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
               ++ K          E  I    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1225 TMESVRKGK-----GLTEEMIDAMKENNVPDWYLDSCLKI-----KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1275 AVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKESIKNTVKDMYSRYMDLGKKEKDV 1334

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      DF +  + +     ++ G+G   A+ I+EA  
Sbjct: 1335 LTVLEIMNEMAHRGFRMQPISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAKRIVEARE 1394

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1395 DGPFLSKEDLNKKA---GLSQKIIEYLDDLGSLPNL-PDKAQL 1433



 Score = 74.2 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  +++  +++ A     AIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTSMSQMDGIPNISAYVNQAAKWGHKAIAVTDHNVVQAFPDAHGAAEKNGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G +  +                     +V  V T  G   
Sbjct: 396 GMEGMLVDDGVPIAYKPTDRDLKEATYVVFDVET-TGLSN 434


>gi|222151098|ref|YP_002560252.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
 gi|222120221|dbj|BAH17556.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
          Length = 1434

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/921 (18%), Positives = 334/921 (36%), Gaps = 194/921 (21%)

Query: 80   QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI 139
            + +LK++N+          + L+V   +G + L ++VS   ++    ++ RI  S L E 
Sbjct: 591  EIDLKLSNKDAYKRARPMHVTLIVQNQKGLKNLFKIVSDS-MVKYFYRTPRIPRSLLNEY 649

Query: 140  GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGY 192
              EG+++ +   +G +  A      +  EK    +       K L+   L  +L R    
Sbjct: 650  -REGILVGSACDNGEVFTAVMQKDQEEVEKIARYYDYLEVQPKALYQHLLDKDLIRDNET 708

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
                  +++ +    ++P++AT N  +L+E D  A ++L+A      ++     +  PD 
Sbjct: 709  MEEIYQRILDVGEKLDIPVLATGNVHYLNEHDKIAREILIASNPGNPLN----RQTLPDA 764

Query: 253  YLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + +   EM+  F  L E       ++NT E+A R   ++ +   +    I+   ++I+  
Sbjct: 765  HFRTTDEMLDAFHFLGEEKAYEIVIKNTNELADRIETVIPIQDKLFTPNIDGANEEIR-- 822

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E +  R +++ G E+             +    RL+ EL+ I    F+  +LI    ++ 
Sbjct: 823  EMSYARARSIYGEEL------------PEIVVARLEKELDSIIGNGFAVIYLISQKLVKK 870

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF-------------------------- 400
            +  +   VG  RGS   S  A    IT+++PL                            
Sbjct: 871  SLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPKCNSSHFFEDGSVASGFDLPD 929

Query: 401  ---------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL      +PD D++F  + +     Y +  +G ++V +
Sbjct: 930  KSCPSCDVPYIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPIAHNYTKVLFGEDKVFR 989

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V               K   ND                       
Sbjct: 990  AGTIGTVAEKTAFGYV---------------KGYMNDSGTH----------------KRG 1018

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNM 560
              +DRL+   +   G+ R    H  GI++      +    P+     D  S    T F+ 
Sbjct: 1019 AEIDRLV---KSCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPADDQSSAWKTTHFDF 1075

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY----------- 609
              I    L+K D LG    T+++   D        +D   IP DD ET            
Sbjct: 1076 HSIHD-NLLKLDILGHDDPTMIRMLQDLSG-----MDPKTIPVDDKETMKIFSSPESLGV 1129

Query: 610  ---HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
                +L   GTLG+ +  +  +RQ LE  +P    +++ +  L     +           
Sbjct: 1130 TEEDILCKTGTLGVPEFGTGFVRQMLEDTKPSSFSELVQISGLSHGTDVWLG-------- 1181

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                  +   LI     +   VI  ++ +M +  + +G   S A  +  ++ K       
Sbjct: 1182 ------NAQELIKSGTCDLSSVIGCRDDIM-VYLMYAGLEPSLAFKIMESVRKGK----- 1229

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
               E F +   +N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ 
Sbjct: 1230 GLSEEFEAAMRENNVPEWYLDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHPLY 1284

Query: 787  FLAASMTLEMDNVE---------------------------------KIKKFCQDARQFN 813
            + A+  T+   + +                                  + +   +  Q  
Sbjct: 1285 YYASYFTVRASDFDLLTMTKDKHTIKATVKDYYSRFHDLGKKEKDVLTVLEITNEMAQRG 1344

Query: 814  IQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             ++ P S+      +F +  + +     ++ G+G   A+ I+ A  + PF S E+   + 
Sbjct: 1345 FKVQPISLEKSTAFEFIIEGDTLIPPFISVPGLGENVAKRIVAARDEGPFLSKEELNKKA 1404

Query: 873  DSKKLNRRVL-ESLVFAGALD 892
               +     L E    AG  D
Sbjct: 1405 GVSQKIIDYLDELGSLAGMPD 1425



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +HS+ S ++G   +   + + A     AIA+TD N   +  +    A AAGI+ I 
Sbjct: 332 VEFHLHSAMSQMDGITHIGKYVAQAAKWGHKAIAVTDHNGCQAFPDAHAAASAAGIKMIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G +  +                     +V  V T
Sbjct: 392 GIEGMLVDDGVNITYKPQDRSLKDATYVVFDVET 425


>gi|257884340|ref|ZP_05663993.1| DNA polymerase III [Enterococcus faecium 1,231,501]
 gi|257820178|gb|EEV47326.1| DNA polymerase III [Enterococcus faecium 1,231,501]
          Length = 1450

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 178/940 (18%), Positives = 337/940 (35%), Gaps = 190/940 (20%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +    Q N  +             + +L     G + L +L+S   + +  ++  RI  
Sbjct: 593  NMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSNV-EYFERVPRIPR 651

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NL 186
            S L+++  E L++ +    G I  A      + A  R   +   ++    +Y       L
Sbjct: 652  SQLKKM-RENLLIGSACDKGEIFEAMMQKGIEEARNRAKFYDYIEVMPKAVYAPLIEQEL 710

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             ++          +V++  + +  +VAT N  +L+EED     +L+        +     
Sbjct: 711  VKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILINSMGG---ANPLNR 767

Query: 247  RVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               PD + +   EM++ F  L E       +ENT +IA  C  ++ V   +    I    
Sbjct: 768  HSLPDVHFRTTDEMLTAFHFLGEETAKEIVVENTNKIADICEEVIPVKDELYTPKIPGSE 827

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D+I   E +  + K + G                +  ++RL+ ELN I    FS  +LI 
Sbjct: 828  DEI--SELSYTKAKQMYG------------DPLPEIIQKRLEKELNSINGNGFSVIYLIA 873

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               +  + ++   VG  RGS   S  A    IT+++PL                      
Sbjct: 874  QKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGS 932

Query: 399  -------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  D + E   Y +  +G
Sbjct: 933  GFDMPEKQCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFG 992

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V                            +    D+  +
Sbjct: 993  EDYVYRAGTIGTVADKTAYGYV----------------------------KGYERDNNLQ 1024

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLP 554
                    VDRL   ++   G+ R    H  GI++      +    P+     D  S+  
Sbjct: 1025 ---FRSAEVDRL---AKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWK 1078

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-- 612
             T F+   I    ++K D LG    T+++   D        +D   IP DD E   +   
Sbjct: 1079 TTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDL-----SGIDPQTIPTDDPEVMRIFAG 1132

Query: 613  ------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                        +  GTLGI +  +  +R  LE   P    +++ +  L     +     
Sbjct: 1133 PEVLGVSQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLG-- 1190

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                 N +E I      +  ++     +++Y    +  A L SG +    + +R+    K
Sbjct: 1191 -----NAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNK 1241

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I +E+   +E ++S   +N +      +  ++      Y F K+HAAAY +++ + A+ K
Sbjct: 1242 IPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFK 1293

Query: 781  THYPVEFLAASMTLEMDNVE---------------------------------KIKKFCQ 807
             ++P+ +  A  ++  D+ +                                  + +   
Sbjct: 1294 VYFPILYYCAYFSVRADDFDLVSMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELAN 1353

Query: 808  DARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            +  +   +        +  V+F +  + +     A+  +GT  A+ I+EA  D PF S E
Sbjct: 1354 EMLERGFKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKE 1413

Query: 867  DFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
            D  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1414 DLATR---GKVSKTLIEYMNDNGVLKDLPDENQLSLFDML 1450



 Score = 75.8 bits (185), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 38/94 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       +G++ + 
Sbjct: 339 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKSGVKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N           +V  V T
Sbjct: 399 GVEANVVDDGVPIAYNDAHEALSEATYVVFDVET 432


>gi|229174484|ref|ZP_04302016.1| DNA polymerase III polC-type [Bacillus cereus MM3]
 gi|228609044|gb|EEK66334.1| DNA polymerase III polC-type [Bacillus cereus MM3]
          Length = 1433

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 173/934 (18%), Positives = 318/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  ++  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYIDPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDVAKEIVVTNTQKIASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPACNVPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE             ++ +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEW------------EDDMKSNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDIEAMAKGSASIRVRIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   +F +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAALSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 DFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|257894713|ref|ZP_05674366.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
 gi|257831092|gb|EEV57699.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
          Length = 1450

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 178/940 (18%), Positives = 337/940 (35%), Gaps = 190/940 (20%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +    Q N  +             + +L     G + L +L+S   + +  ++  RI  
Sbjct: 593  NMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSNV-EYFERVPRIPR 651

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NL 186
            S L+++  E L++ +    G I  A      + A  R   +   ++    +Y       L
Sbjct: 652  SQLKKM-RENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYAPLIEQEL 710

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             ++          +V++  + +  +VAT N  +L+EED     +L+        +     
Sbjct: 711  VKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILINSMGG---ANPLNR 767

Query: 247  RVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               PD + +   EM++ F  L E       +ENT +IA  C  ++ V   +    I    
Sbjct: 768  HSLPDVHFRTTDEMLTAFHFLGEETAKEIVVENTNKIADICEEVIPVKDELYTPKIPGSE 827

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D+I   E +  + K + G                +  ++RL+ ELN I    FS  +LI 
Sbjct: 828  DEI--SELSYTKAKQMYG------------DPLPEIIQKRLEKELNSINGNGFSVIYLIA 873

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               +  + ++   VG  RGS   S  A    IT+++PL                      
Sbjct: 874  QKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGS 932

Query: 399  -------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  D + E   Y +  +G
Sbjct: 933  GFDMPEKQCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFG 992

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V                            +    D+  +
Sbjct: 993  EDYVYRAGTIGTVADKTAYGYV----------------------------KGYERDNNLQ 1024

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLP 554
                    VDRL   ++   G+ R    H  GI++      +    P+     D  S+  
Sbjct: 1025 ---FRSAEVDRL---AKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWK 1078

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-- 612
             T F+   I    ++K D LG    T+++   D        +D   IP DD E   +   
Sbjct: 1079 TTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDL-----SGIDPQTIPTDDPEVMRIFAG 1132

Query: 613  ------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                        +  GTLGI +  +  +R  LE   P    +++ +  L     +     
Sbjct: 1133 PEVLGVSQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLG-- 1190

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                 N +E I      +  ++     +++Y    +  A L SG +    + +R+    K
Sbjct: 1191 -----NAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNK 1241

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I +E+   +E ++S   +N +      +  ++      Y F K+HAAAY +++ + A+ K
Sbjct: 1242 IPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFK 1293

Query: 781  THYPVEFLAASMTLEMDNVE---------------------------------KIKKFCQ 807
             ++P+ +  A  ++  D+ +                                  + +   
Sbjct: 1294 VYFPILYYCAYFSVRADDFDLVSMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELAN 1353

Query: 808  DARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            +  +   +        +  V+F +  + +     A+  +GT  A+ I+EA  D PF S E
Sbjct: 1354 EMLERGFKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKE 1413

Query: 867  DFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
            D  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1414 DLATR---GKVSKTLIEYMNDNGVLKDLPDENQLSLFDML 1450



 Score = 78.1 bits (191), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       AG++ + 
Sbjct: 339 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKAGVKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N  +        +V  V T
Sbjct: 399 GVEANVVDDGVPIAYNDAREALSEATYVVFDVET 432


>gi|257878528|ref|ZP_05658181.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|293567721|ref|ZP_06679063.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E1071]
 gi|294618725|ref|ZP_06698257.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E1679]
 gi|294620761|ref|ZP_06699968.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium U0317]
 gi|257812756|gb|EEV41514.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|291589564|gb|EFF21370.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E1071]
 gi|291595038|gb|EFF26383.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E1679]
 gi|291599741|gb|EFF30751.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium U0317]
          Length = 1450

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 178/940 (18%), Positives = 337/940 (35%), Gaps = 190/940 (20%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +    Q N  +             + +L     G + L +L+S   + +  ++  RI  
Sbjct: 593  NMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSNV-EYFERVPRIPR 651

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NL 186
            S L+++  E L++ +    G I  A      + A  R   +   ++    +Y       L
Sbjct: 652  SQLKKM-RENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYAPLIEQEL 710

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             ++          +V++  + +  +VAT N  +L+EED     +L+        +     
Sbjct: 711  VKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILINSMGG---ANPLNR 767

Query: 247  RVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               PD + +   EM++ F  L E       +ENT +IA  C  ++ V   +    I    
Sbjct: 768  HSLPDVHFRTTDEMLTAFHFLGEETAKEIVVENTNKIADICEEVIPVKDELYTPKIPGSE 827

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D+I   E +  + K + G                +  ++RL+ ELN I    FS  +LI 
Sbjct: 828  DEI--SELSYTKAKQMYG------------DPLPEIIQKRLEKELNSINGNGFSVIYLIA 873

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               +  + ++   VG  RGS   S  A    IT+++PL                      
Sbjct: 874  QKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGS 932

Query: 399  -------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  D + E   Y +  +G
Sbjct: 933  GFDMPEKQCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFG 992

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V                            +    D+  +
Sbjct: 993  EDYVYRAGTIGTVADKTAYGYV----------------------------KGYERDNNLQ 1024

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLP 554
                    VDRL   ++   G+ R    H  GI++      +    P+     D  S+  
Sbjct: 1025 ---FRSAEVDRL---AKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWK 1078

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-- 612
             T F+   I    ++K D LG    T+++   D        +D   IP DD E   +   
Sbjct: 1079 TTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDL-----SGIDPQTIPTDDPEVMRIFAG 1132

Query: 613  ------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                        +  GTLGI +  +  +R  LE   P    +++ +  L     +     
Sbjct: 1133 PEVLGVSQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLG-- 1190

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                 N +E I      +  ++     +++Y    +  A L SG +    + +R+    K
Sbjct: 1191 -----NAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNK 1241

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I +E+   +E ++S   +N +      +  ++      Y F K+HAAAY +++ + A+ K
Sbjct: 1242 IPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFK 1293

Query: 781  THYPVEFLAASMTLEMDNVE---------------------------------KIKKFCQ 807
             ++P+ +  A  ++  D+ +                                  + +   
Sbjct: 1294 VYFPILYYCAYFSVRADDFDLVSMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELAN 1353

Query: 808  DARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            +  +   +        +  V+F +  + +     A+  +GT  A+ I+EA  D PF S E
Sbjct: 1354 EMLERGFKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKE 1413

Query: 867  DFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
            D  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1414 DLATR---GKVSKTLIEYMNDNGVLKDLPDENQLSLFDML 1450



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       AG++ + 
Sbjct: 339 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKAGVKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N           +V  V T
Sbjct: 399 GVEANVVDDGVPIAYNDAHEALSEATYVVFDVET 432


>gi|146297347|ref|YP_001181118.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
            saccharolyticus DSM 8903]
 gi|145410923|gb|ABP67927.1| DNA polymerase III catalytic subunit, PolC type [Caldicellulosiruptor
            saccharolyticus DSM 8903]
          Length = 1402

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 165/890 (18%), Positives = 314/890 (35%), Gaps = 188/890 (21%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
                +LV   +G + L +LVS  +L +   +  RI  S L ++  +GLI+ +   SG + 
Sbjct: 579  YHATILVKNQQGLKNLYKLVSYSHL-EYFYKRPRIPKSVLIQL-KDGLILGSACESGEVF 636

Query: 157  RAFFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRGYDRYR--ESQVVQLAYTHE 208
            RA     S    +++++            +   +     +  ++ R    ++ QL     
Sbjct: 637  RAIMEGKSDDELEKIVSLYDFLEIMPVENNSFLIREGYLKDEEQLRQINKKIYQLGKKLN 696

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
              +VAT+++ +          +L    H+      +        Y +   EM+  F  L 
Sbjct: 697  KLVVATSDAHYCHPHQRILRQIL---KHNQGYDDVENDPYL---YFRTTDEMLKEFEYLG 750

Query: 269  E--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
            +  A E  VE   + + +++   PI       + +  ++E  N    +A       L   
Sbjct: 751  KEAAYEVVVENTNKIADMIEDVKPIPDETFPPKIEGAEEEIYNMTMKRAHEIYGEPL--- 807

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                    +  +QRL+ ELN I +  F+  +LI    +  +  +   VG  RGS   S+ 
Sbjct: 808  -------PEIVKQRLEKELNSIIKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVGSSLV 859

Query: 387  AYALTITDIDPLR-----------------------------------------FSLLFE 405
            A    IT+++PL                                            + FE
Sbjct: 860  ATMCGITEVNPLPPHYVCPNCKYSEFVTDGTVGCGYDLEDKDCPRCGTKLKKDGHDIPFE 919

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
             FL  D    PD D++F  + +    ++ ++ +G   V +  T  ++  K A   V +  
Sbjct: 920  TFLGFDGDKEPDIDLNFSGEYQPIAHKFTEDLFGQGYVFRAGTISTVAEKTAHGFVTKYA 979

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            +                       + ++                 +L +SQ   G+ R  
Sbjct: 980  E----------------------EKGLSLHP------------AEVLRLSQGCTGVKRTT 1005

Query: 526  STHAAGIVIG--DRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              H  G++I   D+ +    P+     S+   +  T F+   I    L+K D LG    T
Sbjct: 1006 GQHPGGLMIVPKDKEIFDFTPIQHPADSEDKSVITTHFDYHAI-SGRLLKLDILGHDDPT 1064

Query: 581  LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESS 626
            +++   D        VD   IP DD  T  + T+               GT GI +  + 
Sbjct: 1065 VIRMLQDLTG-----VDPRSIPLDDKATLSIFTSTEALGVSPEDIDCEVGTFGIPEFGTR 1119

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
             +RQ L   +P    +++ +  L       N+   N +   +  I      +  ++    
Sbjct: 1120 FVRQMLIETKPKSFAELVRISGLSHGT---NVWTNNAQDLVRNGI----ATLKEVISTRD 1172

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
             +++Y  Q      +    S    + +R+  G K ++E +  +          G+ +   
Sbjct: 1173 DIMLYLIQ----KGVPPKDSFRIMEDVRKGKGLKPEDE-ELLRSY--------GVPEWYI 1219

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------ 800
             +  ++      Y F K+HAAAY +++++ A+ K HY   F A   T+  D+ +      
Sbjct: 1220 ESCKKI-----TYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYFTVRADDFDYATILK 1274

Query: 801  -------KIK--------------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGD 832
                   KI+                    +   +     ++  P  +N    + F + D
Sbjct: 1275 GREFIRQKIRDMENRMNSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAEKFIIKD 1334

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
              +     A+  VG   AR+I+EA  +  F S+ED   R    K    +L
Sbjct: 1335 GGLLIPFNALPNVGIAAARNIVEARKEGKFLSIEDLQRRAKLNKQVIEIL 1384



 Score = 77.7 bits (190), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   S   ++   A     AIAITD   + +  E  + + + G++ I 
Sbjct: 304 VELHAHTKMSTMDAVCSAEELIKTAAKWGHRAIAITDHGVVQAFPEAQEVSKSEGLKVIY 363

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G +  +       + N  +        +V+ + T  G+  
Sbjct: 364 GMECYLIDDGVPVVYNPKENQSLDTTFVVVDIET-TGFDN 402


>gi|228940906|ref|ZP_04103465.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar berliner
            ATCC 10792]
 gi|228973835|ref|ZP_04134411.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            thuringiensis str. T01001]
 gi|228980424|ref|ZP_04140734.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
 gi|228779244|gb|EEM27501.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
 gi|228785860|gb|EEM33863.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            thuringiensis str. T01001]
 gi|228818742|gb|EEM64808.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar berliner
            ATCC 10792]
 gi|326941584|gb|AEA17480.1| DNA polymerase III PolC [Bacillus thuringiensis serovar chinensis
            CT-43]
          Length = 1433

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 173/922 (18%), Positives = 323/922 (35%), Gaps = 169/922 (18%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDKAKEVVVTNTQKVASLIGDVRPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKDCPTCNVAYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
             +   TLG+ + + +  +    G+     + +  ++   +P     +V  +   +G +  
Sbjct: 1122 FSGPETLGVTEEQIN-CKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVW 1180

Query: 672  V-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEM-D 726
            + + + LI         VI  ++ +M       L    +    + +R+   K + EE  D
Sbjct: 1181 LGNANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVRKG--KGVPEEWED 1238

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              K   + G              +    K   Y F K+HAAAY +++ + A+ K H+ + 
Sbjct: 1239 DMKGNNVPG-------------WYIDSCKKIKYMFPKAHAAAYVLMAVRIAYFKVHFALL 1285

Query: 787  FLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----------------- 820
            F AA  T+  D+ +          I+    +  Q  +   P                   
Sbjct: 1286 FYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCERG 1345

Query: 821  --------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                      +   +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R 
Sbjct: 1346 YSFQKVDLYRSHATEFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR- 1404

Query: 873  DSKKLNRRVLESLVFAGALDCF 894
               K+++ ++E L   G L   
Sbjct: 1405 --SKVSKTIIEYLDSQGCLGDL 1424



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|254479461|ref|ZP_05092788.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Carboxydibrachium pacificum DSM 12653]
 gi|214034604|gb|EEB75351.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Carboxydibrachium pacificum DSM 12653]
          Length = 1375

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 177/911 (19%), Positives = 328/911 (36%), Gaps = 175/911 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  +K    GI+ +          +++ M  +       V  + +LV   +G + L E+
Sbjct: 544  IKMLEKLQEIGIKSVSEI-------NSVLMEREVDVKKLPVYHVTILVKDQKGLRNLYEI 596

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            +SR  L +   ++ RI  S L ++  EGLI+ +    G + RA   N  +   + ++ F 
Sbjct: 597  ISRSNL-EFFHRTPRIPKSLLVKM-REGLIIGSACEQGEVFRALVSNLEEKKLEDIINFY 654

Query: 175  -----KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                 + +  +   +     R  +  +E   ++ +L   +   +VAT +  FL   D   
Sbjct: 655  DYLEIQPVGNNEFLIERGEVRSVEELKEINRKIYELGKKYNKLVVATGDVHFLDPWDDVY 714

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFIL 285
              +LMA          DR    P  Y +   EM+  F  L E  A E  +E   + + I+
Sbjct: 715  RKILMA---GKGYKDADR---QPPLYFRTTEEMLMEFEYLGEEAAREVVIENPNKIAEIV 768

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            +   PI     E     + +  E ELR   +                     ++RLD EL
Sbjct: 769  EDVKPI----PEGTFPPVIEGAEEELRRITLEKAHEIYGDPL------PPIVQERLDREL 818

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------ 399
            N I    ++  ++I    +  + ++   VG  RGS   S+ A    IT+++PL       
Sbjct: 819  NAIINNGYAVMYVIAQKLVSKSLQDGYLVG-SRGSVGSSLVATMSGITEVNPLPPHYVCP 877

Query: 400  -----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQ 424
                                               F + FE F+  +    PD D++F  
Sbjct: 878  KCKHSEFVTDGSFGCGVDMPDKYCPNCGTLMKKDGFDIPFEVFMGFEGDKEPDIDLNFSG 937

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + +    RY +  +G   V +  T G+L  K A   V +                     
Sbjct: 938  EYQPIAHRYTEELFGKGHVFRAGTIGTLADKTAYGYVKKYF------------------- 978

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQL 542
                          R   +    + RL   +    G+ R    H  G+++  +   +   
Sbjct: 979  ------------EERNLTVHKSEIKRL---TMGCTGIKRTTGQHPGGVMVVPKDKSIYDF 1023

Query: 543  VPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             P+ R      +D+  T F+   +    L+K D LG    T+++   D            
Sbjct: 1024 TPIQRPADAEDTDVITTHFDYHSL-SGKLLKLDILGHDDPTVIRMLEDLTGVNAR----- 1077

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +T  L T+   LGI   E  G      G+     + +  ++   RP   D +V
Sbjct: 1078 KIPLDDKKTMSLFTSVEALGIDPEEL-GTPVGTLGLPEFGTKFVRQMLIETRPTTFDELV 1136

Query: 660  VYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRR 715
              +   +G +  ++    +I   +   + VI  ++ +M       +    S    + +R+
Sbjct: 1137 RISGLSHGTDVWLNNAQDIIREGIATLKEVIAARDDIMLYLISKGMDKKLSFKIMENVRK 1196

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
              G   +EE+++ K        K+G+      +  ++      Y F K+HA AY +++++
Sbjct: 1197 GKG-VTQEEIEEMK--------KHGVPDWFIQSCQKI-----KYMFPKAHAVAYVIMAFR 1242

Query: 776  TAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQDARQFNIQIMPPSVN---- 822
             A+ K +YP  F A   T+  D+          E IK+  ++         P   N    
Sbjct: 1243 IAYFKVYYPEAFYATYFTVRADDFNLDIVLGGKESIKRAIKEIEAKGNNATPKEKNLLTV 1302

Query: 823  ---------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
                                 +    F + +  +   L +++GVG   A+ I +   +  
Sbjct: 1303 LEVALEMYLRGIKFTNVDLYRSDAEKFLITEEGLLPPLNSLEGVGIQAAKAIAQERENGK 1362

Query: 862  FDSLEDFCSRV 872
            F S+EDF +R 
Sbjct: 1363 FISIEDFRNRT 1373



 Score = 74.2 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 31/66 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S L+   S   ++ + A     A+AITD   + +  E  + +   G++ I 
Sbjct: 303 VELHLHTQMSTLDAVPSATEVIKRAAEWGHKAVAITDHAVVQAFPEAMEASREYGVKVIY 362

Query: 72  GCQLDI 77
           G +  +
Sbjct: 363 GMEGYM 368


>gi|218197064|gb|EEC79491.1| hypothetical protein OsI_20540 [Oryza sativa Indica Group]
          Length = 430

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 190/443 (42%), Positives = 259/443 (58%), Gaps = 21/443 (4%)

Query: 41  QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
            PA+AITD  NL   ++F   A  AGI+PIIG    +          Q +     +  + 
Sbjct: 1   MPALAITDFTNLCGLVKFYGSAHGAGIKPIIGADFHV----------QSEVLGDELAQLT 50

Query: 101 LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
           +L S  EGYQ L  L+SR Y    G     I   WL E   EGLI+L+G   G + +   
Sbjct: 51  VLASNNEGYQNLTLLISRAYQRGYGAAGPIIDRDWLIE-HREGLILLSGARQGDVGKFLL 109

Query: 161 FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLF 219
             +    ++ L  +++ F D  Y+ L R    D        V LA    LP+VATN+  F
Sbjct: 110 RGNQAQVDQCLDFYQQYFPDCYYLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRF 169

Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
           L E+D++AH++ +A+     +    RP   +P  Y+++  EM  +F+D+PEAL N+VEIA
Sbjct: 170 LVEDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEDEMCELFADIPEALLNSVEIA 229

Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQ 335
           +RC+  +++    LP+F   +        E+ L  K+  GLE RL         +     
Sbjct: 230 KRCNVTIRLGEYFLPQFPTGDM-----STEDFLVLKSKEGLEERLEFLFPDPEVRAQRRP 284

Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
           +Y +RLD EL VI +M F GYFLIV +FIQW+K NN+PVGPGRGSGAGS+ AYAL ITD+
Sbjct: 285 EYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNNVPVGPGRGSGAGSLVAYALKITDL 344

Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
           DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V   YG E V+QIITFG++ AK
Sbjct: 345 DPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAEMYGREAVSQIITFGTMAAK 404

Query: 456 AALRDVGRALQMPYSQVDRLCKL 478
           A +RDVGR L  PY  VDR+ KL
Sbjct: 405 AVIRDVGRVLGHPYGFVDRISKL 427


>gi|293556647|ref|ZP_06675212.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
 gi|291601182|gb|EFF31469.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
          Length = 1450

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 178/940 (18%), Positives = 337/940 (35%), Gaps = 190/940 (20%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +    Q N  +             + +L     G + L +L+S   + +  ++  RI  
Sbjct: 593  NMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSNV-EYFERVPRIPR 651

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NL 186
            S L+++  E L++ +    G I  A      + A  R   +   ++    +Y       L
Sbjct: 652  SQLKKM-RENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYAPLIEQEL 710

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             ++          +V++  + +  +VAT N  +L+EED     +L+        +     
Sbjct: 711  VKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILINSMGG---ANPLNR 767

Query: 247  RVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               PD + +   EM++ F  L E       +ENT +IA  C  ++ V   +    I    
Sbjct: 768  HSLPDVHFRTTDEMLTAFHFLGEETAKEIVVENTNKIADICEEVIPVKDELYTPKIPGSE 827

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D+I   E +  + K + G                +  ++RL+ ELN I    FS  +LI 
Sbjct: 828  DEI--SELSYTKAKQMYG------------DPLPEIIQKRLEKELNSINGNGFSVIYLIA 873

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               +  + ++   VG  RGS   S  A    IT+++PL                      
Sbjct: 874  QKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGS 932

Query: 399  -------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  D + E   Y +  +G
Sbjct: 933  GFDMPEKQCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFG 992

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V                            +    D+  +
Sbjct: 993  EDYVYRAGTIGTVADKTAYGYV----------------------------KGYERDNNLQ 1024

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLP 554
                    VDRL   ++   G+ R    H  GI++      +    P+     D  S+  
Sbjct: 1025 ---FRSAEVDRL---AKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWK 1078

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-- 612
             T F+   I    ++K D LG    T+++   D        +D   IP DD E   +   
Sbjct: 1079 TTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDL-----SGIDPQTIPTDDPEVMRIFAG 1132

Query: 613  ------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                        +  GTLGI +  +  +R  LE   P    +++ +  L     +     
Sbjct: 1133 PEVLGVSQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLG-- 1190

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                 N +E I      +  ++     +++Y    +  A L SG +    + +R+    K
Sbjct: 1191 -----NAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNK 1241

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I +E+   +E ++S   +N +      +  ++      Y F K+HAAAY +++ + A+ K
Sbjct: 1242 IPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFK 1293

Query: 781  THYPVEFLAASMTLEMDNVE---------------------------------KIKKFCQ 807
             ++P+ +  A  ++  D+ +                                  + +   
Sbjct: 1294 VYFPILYYCAYFSVRADDFDLVSMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELAN 1353

Query: 808  DARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            +  +   +        +  V+F +  + +     A+  +GT  A+ I+EA  D PF S E
Sbjct: 1354 EMLERGFKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKE 1413

Query: 867  DFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
            D  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1414 DLATR---GKVSKTLIEYMNDNGVLKDLPDENQLSLFDML 1450



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       AG++ + 
Sbjct: 339 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKAGVKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N           +V  V T
Sbjct: 399 GVEANVVDDGVPIAYNDAHEALSEATYVVFDVET 432


>gi|294613939|ref|ZP_06693874.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
 gi|291593214|gb|EFF24788.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
          Length = 1450

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 178/940 (18%), Positives = 337/940 (35%), Gaps = 190/940 (20%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +    Q N  +             + +L     G + L +L+S   + +  ++  RI  
Sbjct: 593  NMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSNV-EYFERVPRIPR 651

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NL 186
            S L+++  E L++ +    G I  A      + A  R   +   ++    +Y       L
Sbjct: 652  SQLKKM-RENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYAPLIEQEL 710

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             ++          +V++  + +  +VAT N  +L+EED     +L+        +     
Sbjct: 711  VKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILINSMGG---ANPLNR 767

Query: 247  RVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               PD + +   EM++ F  L E       +ENT +IA  C  ++ V   +    I    
Sbjct: 768  HSLPDVHFRTTDEMLTAFHFLGEETAKEIVVENTNKIADICEEVIPVKDELYTPKIPGSE 827

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D+I   E +  + K + G                +  ++RL+ ELN I    FS  +LI 
Sbjct: 828  DEI--SELSYTKAKQMYG------------DPLPEIIQKRLEKELNSINGNGFSVIYLIA 873

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               +  + ++   VG  RGS   S  A    IT+++PL                      
Sbjct: 874  QKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGS 932

Query: 399  -------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  D + E   Y +  +G
Sbjct: 933  GFDMPEKQCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFG 992

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V                            +    D+  +
Sbjct: 993  EDYVYRAGTIGTVADKTAYGYV----------------------------KGYERDNNLQ 1024

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLP 554
                    VDRL   ++   G+ R    H  GI++      +    P+     D  S+  
Sbjct: 1025 ---FRSAEVDRL---AKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWK 1078

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-- 612
             T F+   I    ++K D LG    T+++   D        +D   IP DD E   +   
Sbjct: 1079 TTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDL-----SGIDPQTIPTDDPEVMRIFAG 1132

Query: 613  ------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                        +  GTLGI +  +  +R  LE   P    +++ +  L     +     
Sbjct: 1133 PEVLGVSQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLG-- 1190

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                 N +E I      +  ++     +++Y    +  A L SG +    + +R+    K
Sbjct: 1191 -----NAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNK 1241

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I +E+   +E ++S   +N +      +  ++      Y F K+HAAAY +++ + A+ K
Sbjct: 1242 IPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFK 1293

Query: 781  THYPVEFLAASMTLEMDNVE---------------------------------KIKKFCQ 807
             ++P+ +  A  ++  D+ +                                  + +   
Sbjct: 1294 VYFPILYYCAYFSVRADDFDLVSMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELAN 1353

Query: 808  DARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            +  +   +        +  V+F +  + +     A+  +GT  A+ I+EA  D PF S E
Sbjct: 1354 EMLERGFKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKE 1413

Query: 867  DFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
            D  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1414 DLATR---GKVSKTLIEYMNDNGVLKDLPDENQLSLFDML 1450



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       AG++ + 
Sbjct: 339 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKAGVKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N           +V  V T
Sbjct: 399 GVEANVVDDGVPIAYNDAHEALSEATYVVFDVET 432


>gi|223044235|ref|ZP_03614272.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            capitis SK14]
 gi|222442385|gb|EEE48493.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            capitis SK14]
          Length = 1438

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 328/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQ +    +    + N K+TN+          + L+V   EG + L ++VS   L+    
Sbjct: 582  IQQMTELGVHNHNEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVKYYY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EG+++ T    G +  A         EK    +         L+ 
Sbjct: 641  RTPRIPRSLLNEY-REGILVGTACDEGELFTAVMQKDQAEVEKIAKYYDFIEVQPPALYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          ++++   +  +P++AT N+ +L E D  A  +L+A      
Sbjct: 700  DLMDRELIRDNETLTEIYQRLIEAGDSVNIPVIATGNAHYLYEHDAIARKILIASQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM+  F  L E  A E  V+     +  ++   PI  +   
Sbjct: 760  LN----RTTLPEAHFRTTDEMLDEFHFLGEEKAYEIVVKNTNELAERIERVVPIKDKLFT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +       +E+R  + +  +    +         Q    RL+ EL  I    FS  +
Sbjct: 816  PRMEGAN----DEIRELSYSNAKKLYGEDL------PQIVIDRLEKELESIIGNGFSVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFNDGS 924

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 985  LFGEDKVFRAGTIGTVAEKTAFGFVKGYLNDQGIHKRGAEIDRLVK-------------- 1030

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1031 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQFPA 1065

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  +    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1119

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            +T                +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 DTMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1180 TDVWLG--------------NAQELIRQGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1224

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
                + K          +  +    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1225 TMEFVRKGR-----GLTDEMVEAMKENDVPDWYLDSCRKI-----KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + AA  T+   + +                                
Sbjct: 1275 AVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1334

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      DF + ++ +     A+ G+G   A+ I+EA  
Sbjct: 1335 LTVLEIMNEMAHRGFRMQPISLEKSQAFDFVIEEDTLIPPFVAVPGLGENVAKRIVEARE 1394

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            + PF S ED   +     L+++V++ L   G+L      + QL
Sbjct: 1395 EGPFLSKEDLNKKA---GLSQKVIDYLDEMGSLPGL-PDKAQL 1433



 Score = 77.7 bits (190), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++ + +++ A     AIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGSYVEQAAEWGHSAIAVTDHNVVQAFPDAHNAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G +  +                     +V  V T  G   
Sbjct: 396 GMEGMLVDDGVPIAYKPTDRVLKDATYVVFDVET-TGLSN 434


>gi|329724322|gb|EGG60834.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis VCU144]
          Length = 1438

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 175/943 (18%), Positives = 327/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    ++  ++ N K+TN+          + L+V   EG + L ++VS   L+    
Sbjct: 582  VQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVKYYY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 641  RTPRIPRSLLNEY-REGLLIGTACDEGELFTAVMQKDQSEVEKIAKFYDFIEVQPPALYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    +  +P++AT N+ +L E D  A  +L+A      
Sbjct: 700  DLMDRELIRDNETLTQIYKRLIDAGKSANIPVIATGNAHYLYEHDAIARKILIASQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM+  F  L E  A E  V      +  ++   PI  +   
Sbjct: 760  LN----RSTLPEAHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELANKIEKVVPIKDKLFT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               D        E+R  + +  +    +         Q    RL+ EL+ I    FS  +
Sbjct: 816  PRMDGAN----EEIRELSYSNAKKLYGEDL------PQIVIDRLEKELDSIIGNGFSVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFDDGS 924

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 985  LFGEDKVFRAGTIGTVAEKTAFGFVKGYLNDQGIHKRGAEIDRLVK-------------- 1030

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1031 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQFPA 1065

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  +    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1119

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            ET                +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 ETMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1180 TDVWLG--------------NAQELIRQGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1224

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
                + K          +  +    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1225 TMEFVRKGR-----GLTDEMVEAMKENNVPDWYLDSCRKI-----KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + AA  T+   + +                                
Sbjct: 1275 AVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1334

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      DF +  + +     ++ G+G   A+ I+EA  
Sbjct: 1335 LTVLEIMNEMAHRGFRLQPISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEARE 1394

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            + PF S ED   +     L+++V++ L   G+L      + QL
Sbjct: 1395 EGPFLSKEDLNKKA---GLSQKVIDYLDELGSLPDL-PDKAQL 1433



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  +++  +++ A     A+A+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTSMSQMDGIPNISAYVEQAAKWGHQALAVTDHNVVQAFPDAHNAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G +  +                     +V  V T  G   
Sbjct: 396 GMEGMLVDDGVPIAYKPTDRNLKDATYVVFDVET-TGLSN 434


>gi|257887081|ref|ZP_05666734.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
 gi|257895646|ref|ZP_05675299.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|293377743|ref|ZP_06623932.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium PC4.1]
 gi|257823135|gb|EEV50067.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
 gi|257832211|gb|EEV58632.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|292643743|gb|EFF61864.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium PC4.1]
          Length = 1450

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 177/940 (18%), Positives = 337/940 (35%), Gaps = 190/940 (20%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +    Q N  +             + +L     G + L +L+S   + +  ++  RI  
Sbjct: 593  HMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSNV-EYFERVPRIPR 651

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NL 186
            S L+++  E L++ +    G I  A      + A  R   +   ++    +Y       L
Sbjct: 652  SQLKKM-RENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYAPLIEQEL 710

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             ++          +V++  + +  +VAT N  +L+EED     +L+        +     
Sbjct: 711  VKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILINSMGG---ANPLNR 767

Query: 247  RVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               PD + +   EM++ F  L E       ++NT +IA  C  ++ V   +    I    
Sbjct: 768  HSLPDVHFRTTDEMLTAFHFLGEETAKEIVVDNTNKIADICEEVIPVKDELYTPKIPGSE 827

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D+I   E +  + K + G                +  ++RL+ ELN I    FS  +LI 
Sbjct: 828  DEI--SELSYTKAKQMYG------------DPLPEIIQKRLEKELNSINGNGFSVIYLIA 873

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               +  + ++   VG  RGS   S  A    IT+++PL                      
Sbjct: 874  QKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGS 932

Query: 399  -------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  D + E   Y +  +G
Sbjct: 933  GFDMPEKQCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFG 992

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V                            +    D+  +
Sbjct: 993  EDYVYRAGTIGTVADKTAYGYV----------------------------KGYERDNNLQ 1024

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLP 554
                    VDRL   ++   G+ R    H  GI++      +    P+     D  S+  
Sbjct: 1025 ---FRSAEVDRL---AKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWK 1078

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-- 612
             T F+   I    ++K D LG    T+++   D        +D   IP DD E   +   
Sbjct: 1079 TTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDL-----SGIDPQTIPTDDPEVMRIFAG 1132

Query: 613  ------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                        +  GTLGI +  +  +R  LE   P    +++ +  L     +     
Sbjct: 1133 PEVLGVTQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLG-- 1190

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                 N +E I      +  ++     +++Y    +  A L SG +    + +R+    K
Sbjct: 1191 -----NAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNK 1241

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I +E+   +E ++S   +N +      +  ++      Y F K+HAAAY +++ + A+ K
Sbjct: 1242 IPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFK 1293

Query: 781  THYPVEFLAASMTLEMDNVE---------------------------------KIKKFCQ 807
             ++P+ +  A  ++  D+ +                                  + +   
Sbjct: 1294 VYFPILYYCAYFSVRADDFDLVSMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELAN 1353

Query: 808  DARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            +  +   +        +  V+F +  + +     A+  +GT  A+ I+EA  D PF S E
Sbjct: 1354 EMLERGFKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKE 1413

Query: 867  DFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
            D  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1414 DLATR---GKVSKTLIEYMNDNGVLKDLPDENQLSLFDML 1450



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       AG++ + 
Sbjct: 339 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKAGVKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N           +V  V T
Sbjct: 399 GVEANVVDDGVPIAYNDAHEALNEATYVVFDVET 432


>gi|293570615|ref|ZP_06681666.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E980]
 gi|291609286|gb|EFF38557.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E980]
          Length = 1450

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 177/940 (18%), Positives = 337/940 (35%), Gaps = 190/940 (20%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +    Q N  +             + +L     G + L +L+S   + +  ++  RI  
Sbjct: 593  HMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSNV-EYFERVPRIPR 651

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NL 186
            S L+++  E L++ +    G I  A      + A  R   +   ++    +Y       L
Sbjct: 652  SQLKKM-RENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYAPLIEQEL 710

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             ++          +V++  + +  +VAT N  +L+EED     +L+        +     
Sbjct: 711  VKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILINSMGG---ANPLNR 767

Query: 247  RVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               PD + +   EM++ F  L E       ++NT +IA  C  ++ V   +    I    
Sbjct: 768  HSLPDVHFRTTDEMLTAFHFLGEETAKEIVVDNTNKIADICEEVIPVKDELYTPKIPGSE 827

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D+I   E +  + K + G                +  ++RL+ ELN I    FS  +LI 
Sbjct: 828  DEI--SELSYTKAKQMYG------------DPLPEIIQKRLEKELNSINGNGFSVIYLIA 873

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               +  + ++   VG  RGS   S  A    IT+++PL                      
Sbjct: 874  QKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGS 932

Query: 399  -------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  D + E   Y +  +G
Sbjct: 933  GFDMPEKQCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFG 992

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V                            +    D+  +
Sbjct: 993  EDYVYRAGTIGTVADKTAYGYV----------------------------KGYERDNNLQ 1024

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLP 554
                    VDRL   ++   G+ R    H  GI++      +    P+     D  S+  
Sbjct: 1025 ---FRSAEVDRL---AKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWK 1078

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-- 612
             T F+   I    ++K D LG    T+++   D        +D   IP DD E   +   
Sbjct: 1079 TTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDL-----SGIDPQTIPTDDPEVMRIFAG 1132

Query: 613  ------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                        +  GTLGI +  +  +R  LE   P    +++ +  L     +     
Sbjct: 1133 PEVLGVTQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLG-- 1190

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                 N +E I      +  ++     +++Y    +  A L SG +    + +R+    K
Sbjct: 1191 -----NAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNK 1241

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I +E+   +E ++S   +N +      +  ++      Y F K+HAAAY +++ + A+ K
Sbjct: 1242 IPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFK 1293

Query: 781  THYPVEFLAASMTLEMDNVE---------------------------------KIKKFCQ 807
             ++P+ +  A  ++  D+ +                                  + +   
Sbjct: 1294 VYFPILYYCAYFSVRADDFDLVSMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELAN 1353

Query: 808  DARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            +  +   +        +  V+F +  + +     A+  +GT  A+ I+EA  D PF S E
Sbjct: 1354 EMLERGFKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKE 1413

Query: 867  DFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
            D  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1414 DLATR---GKVSKTLIEYMNDNGVLKDLPDENQLSLFDML 1450



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       AG++ + 
Sbjct: 339 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKAGVKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N           +V  V T
Sbjct: 399 GVEANVVDDGVPIAYNDAHEALNEATYVVFDVET 432


>gi|154502558|ref|ZP_02039618.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149]
 gi|153796750|gb|EDN79170.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149]
          Length = 1503

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 189/973 (19%), Positives = 333/973 (34%), Gaps = 192/973 (19%)

Query: 36   IAADQQP----AIAITDTNNLFSA-LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGK 90
              A          A+ D        ++F +      I  +       DM  N        
Sbjct: 598  AKALGISLENHHRAVDDAGATAEIFVKFVEMLKDRNITTLKEMNRFGDMNVNAIRKLP-- 655

Query: 91   TPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGG 150
                    I++LV    G   L +L+S  +L     +  RI  S L +   EGLI+ +  
Sbjct: 656  -----THHIIILVKNDIGRFNLYQLISASHLT-YFARRPRIPKSLLNQ-HREGLIIGSAC 708

Query: 151  SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-----------RESQ 199
             +G + +A     S  A  RL  F   +  +   N Q     DRY              +
Sbjct: 709  EAGELYQAILNQKSPQAVARLAEFYDYYEIQPLGNNQFMIDSDRYGDINSKEDLQNINRE 768

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V L    + P+VAT +  FL  ED     ++MA          D     P  YL+   E
Sbjct: 769  IVSLGEKFKKPVVATCDVHFLDPEDEVYRRIIMA---GKGFGDAD---TQPPLYLRTTDE 822

Query: 260  MVSIFSDLPEALENTVEI--ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
            M+  FS L  A    + I    R   +++  +P+ P     +C  + +  E  LR+    
Sbjct: 823  MLEEFSYLGSAKAREIVIDNPNRICDMVEKISPVNP----NKCPPVIENSEQNLRDICYN 878

Query: 318  GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
                   +         +  + RL+ EL  I    +S  ++I    +  +  +   VG  
Sbjct: 879  KAHEIYGENL------PEPVQTRLERELTSIISNGYSVMYIIAQKLVWKSNDDGYLVG-S 931

Query: 378  RGSGAGSVTAYALTITDIDPLR-------------------------------------- 399
            RGS   S  A    IT+++PL                                       
Sbjct: 932  RGSVGSSFVATMAGITEVNPLSPHYYCSECHYSDFDSEEVRAFAGGCGFDMPDKNCPNCG 991

Query: 400  -------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
                   F + FE FL       PD D++F  D + +  RY +  +G     +  T G+L
Sbjct: 992  AKLVKAGFDIPFETFLGFKGDKEPDIDLNFSGDYQAKAHRYTEVIFGEGHTFKAGTIGTL 1051

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
              K A   V                                     R  R     +DR+L
Sbjct: 1052 ADKTAFGYVKNYY-------------------------------EERGHRKRKCEIDRIL 1080

Query: 513  EISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAG 567
               Q   G+ R    H  GIV+      +++  P+         D+  T F+   I+   
Sbjct: 1081 ---QGCTGIRRSTGQHPGGIVVLPHGHDINEFTPVQHPANDMTTDIITTHFDYHSIDH-N 1136

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI--------PFDDHETYHLLTTKGTLG 619
            L+K D LG    T+++   +++    ++ + +          P DD +   L      LG
Sbjct: 1137 LLKLDILGHDDPTMIRTLEEYITSDALENEYNDENPFDATKIPLDDKKVLSLFHDTSALG 1196

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            I   +  G      G+     + +I +V    P  + +++  +   +G    + +   LI
Sbjct: 1197 IKPEDIDGCNLGCLGIPEFGTDFVIQMVQDANPQSLSDLIRISGLSHGTNVWLGNAQVLI 1256

Query: 679  DPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            +         I  ++ +M       + S  S +  + +R+  G K + E           
Sbjct: 1257 ESGKATISTAICTRDDIMIYLINQGVDSALSFTIMESVRKGKGLKPEWE----------- 1305

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS---- 791
                 + +    + +    K   Y F K+HAAAY +++Y+ A+ K +YP+ +  A     
Sbjct: 1306 ---ETMKEKDVPDWYIWSCKQISYMFPKAHAAAYVMMAYRIAYCKINYPLAYYGAYFGIR 1362

Query: 792  -----------------------------MTLEMDNVEKIKKFCQDARQFNIQIMPPSV- 821
                                         ++ +  +V K  K  Q+      + +P  + 
Sbjct: 1363 ANAFSYELMCQGKDKLNYYMKDYKRRSDSLSNKEQDVLKDMKIVQEMYARGYEFLPLDIY 1422

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                  F++ D ++   L++I+G+G   A  + EA+ D P+ SL+DF  R    K+++ V
Sbjct: 1423 KAKATKFQIIDGKLMPPLSSIEGMGEKAAEAVEEAAKDGPYLSLDDFRQRT---KVSKTV 1479

Query: 882  LESLVFAGALDCF 894
            +E +   G     
Sbjct: 1480 IEFMSDLGLFGNL 1492



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
           V L  H+  S ++G   + +I+ +      PAIAITD   
Sbjct: 378 VELHCHTKMSDMDGVSEVKSIVKRAHDWGHPAIAITDHGV 417


>gi|257898236|ref|ZP_05677889.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
 gi|257836148|gb|EEV61222.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
          Length = 1450

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 177/940 (18%), Positives = 337/940 (35%), Gaps = 190/940 (20%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +    Q N  +             + +L     G + L +L+S   + +  ++  RI  
Sbjct: 593  HMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSNV-EYFERVPRIPR 651

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NL 186
            S L+++  E L++ +    G I  A      + A  R   +   ++    +Y       L
Sbjct: 652  SQLKKM-RENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYAPLIEQEL 710

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             ++          +V++  + +  +VAT N  +L+EED     +L+        +     
Sbjct: 711  VKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILINSMGG---ANPLNR 767

Query: 247  RVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               PD + +   EM++ F  L E       ++NT +IA  C  ++ V   +    I    
Sbjct: 768  HSLPDVHFRTTDEMLTAFHFLGEETAKEIVVDNTNKIADICEEVIPVKDELYTPKIPGSE 827

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D+I   E +  + K + G                +  ++RL+ ELN I    FS  +LI 
Sbjct: 828  DEI--SELSYTKAKQMYG------------DPLPEIIQKRLEKELNSINGNGFSVIYLIA 873

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               +  + ++   VG  RGS   S  A    IT+++PL                      
Sbjct: 874  QKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGS 932

Query: 399  -------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  D + E   Y +  +G
Sbjct: 933  GFDMPEKQCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFG 992

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V                            +    D+  +
Sbjct: 993  EDYVYRAGTIGTVADKTAYGYV----------------------------KGYERDNNLQ 1024

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLP 554
                    VDRL   ++   G+ R    H  GI++      +    P+     D  S+  
Sbjct: 1025 ---FRSAEVDRL---AKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWK 1078

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-- 612
             T F+   I    ++K D LG    T+++   D        +D   IP DD E   +   
Sbjct: 1079 TTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDL-----SGIDPQTIPTDDPEVMRIFAG 1132

Query: 613  ------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                        +  GTLGI +  +  +R  LE   P    +++ +  L     +     
Sbjct: 1133 PEVLGVTQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLG-- 1190

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                 N +E I      +  ++     +++Y    +  A L SG +    + +R+    K
Sbjct: 1191 -----NAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNK 1241

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I +E+   +E ++S   +N +      +  ++      Y F K+HAAAY +++ + A+ K
Sbjct: 1242 IPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFK 1293

Query: 781  THYPVEFLAASMTLEMDNVE---------------------------------KIKKFCQ 807
             ++P+ +  A  ++  D+ +                                  + +   
Sbjct: 1294 VYFPILYYCAYFSVRADDFDLVSMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELAN 1353

Query: 808  DARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            +  +   +        +  V+F +  + +     A+  +GT  A+ I+EA  D PF S E
Sbjct: 1354 EMLERGYKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKE 1413

Query: 867  DFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
            D  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1414 DLATR---GKVSKTLIEYMNDNGVLKDLPDENQLSLFDML 1450



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       AG++ + 
Sbjct: 339 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKAGVKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N           +V  V T
Sbjct: 399 GVEANVVDDGVPIAYNDAHEALNEATYVVFDVET 432


>gi|302872252|ref|YP_003840888.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
            OB47]
 gi|302575111|gb|ADL42902.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
            OB47]
          Length = 1402

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 166/880 (18%), Positives = 306/880 (34%), Gaps = 168/880 (19%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
                +LV   +G + L +LVS  +L +   +  RI  S L ++  +GL++ +   SG I 
Sbjct: 579  YHATILVKNQQGLKNLYKLVSYSHL-EYFYKRPRIPKSLLIQL-RDGLLIGSACESGEIF 636

Query: 157  RAFFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRGYD--RYRESQVVQLAYTHE 208
            RAF    S+   +++  F           +   +     +  +  R    ++ QL     
Sbjct: 637  RAFLEGKSEEEIEKIAAFYDFLEIMPVENNSFLIREGYLKDEESLREINKKIYQLGKKLG 696

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
              +VAT+++ +          +L    H+      +     P  Y +   EM+  F  L 
Sbjct: 697  KLVVATSDAHYCHPHQRVLRQIL---KHNQGYDDVEND---PQLYFRTTDEMLKEFEYLG 750

Query: 269  -EAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
             +A  E  VE   + + +++   PI       + +  ++E  N    KA           
Sbjct: 751  RDACYEVVVENTNKIADMIEDVKPIPDETFPPKIEGAEEEIYNMTMKKAHE--------- 801

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
             I      +  R RL+ ELN I +  F+  +LI    +  +  +   VG  RGS   S+ 
Sbjct: 802  -IYGDPLPEIVRARLEKELNSIIKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVGSSLV 859

Query: 387  AYALTITDIDPLR-----------------------------------------FSLLFE 405
            A    IT+++PL                                            + FE
Sbjct: 860  ATMCGITEVNPLPPHYVCPNCKYSEFITDGSVGCGYDLEDKNCPRCGEKLRKDGHDIPFE 919

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
             FL  D    PD D++F  D +    ++ +  +G   V +  T  ++  K A   V +  
Sbjct: 920  TFLGFDGDKEPDIDLNFSGDYQPIAHKFTEELFGQGYVFRAGTISTVAEKTAHGFVTKYA 979

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            +                       + ++                 +L +SQ   G+ R  
Sbjct: 980  E----------------------EKGLSLHP------------AEILRLSQGCTGVKRTT 1005

Query: 526  STHAAGIVIG--DRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              H  G++I   DR +    P+     S+   +  T F+   I    L+K D LG    T
Sbjct: 1006 GQHPGGLMIVPRDREIFDFTPIQHPADSEDKSVITTHFDYHAI-SGRLLKLDILGHDDPT 1064

Query: 581  LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +++   D        VD   IP DD +T  + T+   LGI   +         G+     
Sbjct: 1065 VIRMLQDLTG-----VDPRSIPLDDKDTMSIFTSTEALGISPEDID-CEVGTFGIPEFGT 1118

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIA 699
              +  ++   +P     +V  +   +G     +    L+   +   + VI  ++ +M   
Sbjct: 1119 RFVRQMLIETKPKTFAELVRISGLSHGTNVWTNNAQDLVRNGIATLKEVISTRDDIMLYL 1178

Query: 700  Q---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
                +    S    + +R+  G K ++E    +   +              + +    K 
Sbjct: 1179 IQKGVPPKDSFRIMEDVRKGKGLKPEDE-QLLRAHNVP-------------DWYIESCKK 1224

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIK 803
              Y F K+HAAAY +++++ A+ K HY   F A   T+  D+ +             KI+
Sbjct: 1225 ITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYFTVRADDFDYATILKGRDAIRQKIR 1284

Query: 804  --------------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAI 842
                                +   +     ++  P  +N    + F + D  +     A+
Sbjct: 1285 DLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAERFIIKDGGLLIPFNAL 1344

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
              VG   A+ I+EA  +  F S++D   R    K    +L
Sbjct: 1345 PNVGVAAAKSIVEARKEGRFLSVDDLQRRAKLNKQVIEIL 1384



 Score = 75.0 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 38/94 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   S   I+   A+    A+AITD   + +  E  + + +  I+ I 
Sbjct: 304 VELHAHTKMSAMDAVCSAEEIIKLAASMGHKAVAITDHGVVQAFPEAQEASKSYNIKVIY 363

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G +  +       + N  +        +V+ + T
Sbjct: 364 GMECYLIDDGAPVVYNPKEGQGFDSTFVVVDIET 397


>gi|302389800|ref|YP_003825621.1| DNA polymerase III catalytic subunit, PolC type [Thermosediminibacter
            oceani DSM 16646]
 gi|302200428|gb|ADL07998.1| DNA polymerase III catalytic subunit, PolC type [Thermosediminibacter
            oceani DSM 16646]
          Length = 1415

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 175/905 (19%), Positives = 334/905 (36%), Gaps = 172/905 (19%)

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
              N+  T +      ++LV  ++G + L +LVS  +L +   +  RI  S L++   EGL
Sbjct: 579  QVNKKATQYLNSYHAIILVKNSQGLRDLYKLVSISHL-EYFYRHPRIPKSLLKKY-REGL 636

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE- 197
            I+ +G  +G + ++  ++ S    +R++ F      + L  ++  +        ++ +E 
Sbjct: 637  IVGSGCEAGELFQSLIYHHSDKDIERIVFFYDFLEIQPLQNNKFLIEKGILSNEEKLKEI 696

Query: 198  -SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKN 256
              ++ QL   +  P+V T +  FL+ ED     +L+ V      +      +    YLK 
Sbjct: 697  NKRIYQLGKKYNKPVVITGDVHFLNPEDETYRKILLTVQGYRDNN------LDSGLYLKT 750

Query: 257  RSEMVSIFSDLPE--ALENTVEIARRCSFILQVH-APILPRFIEKECDDIQKEEENELRN 313
              EM+     L E  A E  +E   R +  ++    P+       + +   +E  N   N
Sbjct: 751  TEEMLDECRYLGEEAAKEVVIENPNRIADEIEDGIKPVPDELYPPKIEGADEEIINMTYN 810

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            +A       L           +  ++R++ ELN I    +S  +LI    ++ +  +   
Sbjct: 811  RAKEIYGEEL----------PEIVKKRIERELNSIVNNGYSVIYLIAHKLVKKSLDDGYL 860

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLR---------------------------------- 399
            VG  RGS   S+ A    IT+++PL                                   
Sbjct: 861  VG-SRGSVGSSLVATMCGITEVNPLPPHYLCPKCKNSIFPDNVEGIVGPDLPDKICPVCG 919

Query: 400  -------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
                   +++ FE F+  +   +PD D++F  + +    +Y +  +G   V +  T  ++
Sbjct: 920  CPMKKDGYNIPFEVFMGFEGDKVPDIDLNFSGEYQPIAHKYTEELFGKNNVFRAGTISTI 979

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
              K A   V                            +A  ++ R      ++  + RL 
Sbjct: 980  AEKTAYGFV----------------------------RAYLEEKRITA---SEYEIKRL- 1007

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMY---RDVRSDLPVTQFNMKWIEKAG 567
              +  + G+ R    H  G+++  +   + +  P+     D  S +  T F+   I +  
Sbjct: 1008 --AAGITGVKRTTGQHPGGLMVVPKDKEIFEFTPIQYPADDKESGVITTHFDYHSISE-R 1064

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            L+K D LG    T+++   +        +D   IP DD  T  + ++   LG+   +  G
Sbjct: 1065 LLKLDLLGHDDPTVIKMLEE-----ETGIDAKKIPLDDRATMAIFSSLEPLGLKPEDV-G 1118

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQ 686
                  G+       +  ++   RP     +V  +   +G +  ++    LI   +   +
Sbjct: 1119 TTVGTLGVPEFGTRFVRQMLEETRPTTFSELVRISGLSHGTDVWLNNAQDLIKNKMATLK 1178

Query: 687  GVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             VI  ++ +M       +    + +  + +R+  G K +EE             +NG+  
Sbjct: 1179 EVIATRDDIMIHLIEKGIDHKTAFTIMEKVRKGKGLKPEEEQIL---------KENGV-- 1227

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--- 800
                  F    K   Y F K+HA AY +++++ A+ K HYP  F A   T+  D+ +   
Sbjct: 1228 ---EQWFIDSCKKIKYMFPKAHAVAYVIMAFRIAYFKVHYPEAFYATYFTVRADDFDAKL 1284

Query: 801  ------KIKKFC------------------------QDARQFNIQIMPPSVNTPCV-DFK 829
                  KIK+                           +     IQ +P  +       F 
Sbjct: 1285 ILQGPKKIKEVIEEINKKEKNATPKEKNLLTILEVANEMYMRGIQFIPIDLYKSHYSKFI 1344

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +    I   L A+ G+G + A+ I        F S+ED   R    K    V+E L  +G
Sbjct: 1345 ITKEGILPPLNALPGLGLSAAQSIYNERQKGEFASIEDLRMRTRVTKN---VVEILRQSG 1401

Query: 890  ALDCF 894
             L+  
Sbjct: 1402 VLNGL 1406



 Score = 78.5 bits (192), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 38/94 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+ YS L+   S   +++        A+A TD   + S  E  + A A GI+ I 
Sbjct: 318 VELHLHTRYSALDAVCSPKEVIELCKHWGHKAVAFTDHGVVQSFPEVYEAAKATGIKAIY 377

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G +  I   +   +    +        +V  + T
Sbjct: 378 GLEAYIFDDEFPVIAEPPEGNIDDFVYVVTDIET 411


>gi|229031448|ref|ZP_04187448.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
 gi|228729737|gb|EEL80717.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
          Length = 1433

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/934 (18%), Positives = 318/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDGMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDVAKEIVVTNTQKVASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPACNVPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVS---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPKSLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE ++             +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEE------------DMKSNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   +F +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATEFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 DFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|319401446|gb|EFV89656.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis FRI909]
          Length = 1438

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 327/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    ++  ++ N K+TN+          + L+V   EG + L ++VS   L+    
Sbjct: 582  VQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVKYYY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EG+++ T    G +  A         EK    +         L+ 
Sbjct: 641  RTPRIPRSLLNEY-REGILIGTACDEGELFTAVMQKDQSEVEKIAKFYDFIEVQPPALYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    +  +P++AT N+ +L E D  A  +L+A      
Sbjct: 700  DLMDRELIRDNETLTQIYKRLIDAGKSANIPVIATGNAHYLFEHDAIARKILIASQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM+  F  L E  A E  V      +  ++   PI  +   
Sbjct: 760  LN----RSTLPEAHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELADKIEKVVPIKDKLFT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               D        E+R  + +  +    +         Q    RL+ EL+ I    FS  +
Sbjct: 816  PRMDGAN----EEIRELSYSNAKKLYGEDL------PQIVIDRLEKELDSIIGNGFSVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFDDGS 924

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 985  LFGEDKVFRAGTIGTVAEKTAFGFVKGYLNDQGIHKRGAEIDRLVK-------------- 1030

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1031 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQFPA 1065

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  +    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1119

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            ET                +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 ETMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1180 TDVWLG--------------NAQELIRQGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1224

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
                + K          +  +    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1225 TMEFVRKGR-----GLTDEMVEAMKENNVPDWYLDSCRKI-----KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + AA  T+   + +                                
Sbjct: 1275 AVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1334

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      DF +  + +     ++ G+G   A+ I+EA  
Sbjct: 1335 LTVLEIMNEMAHRGFRLQPISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEARE 1394

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            + PF S ED   +     L+++V++ L   G+L      + QL
Sbjct: 1395 EGPFLSKEDLNKKA---GLSQKVIDYLDELGSLPDL-PDKAQL 1433



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  +++  +++ A     A+A+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTSMSQMDGIPNISAYVEQAAKWGHRALAVTDHNVVQAFPDAHNAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G +  +                     +V  V T  G   
Sbjct: 396 GMEGMLVDDGVPIAYKPTDRNLKDATYVVFDVET-TGLSN 434


>gi|57866746|ref|YP_188413.1| DNA polymerase III PolC [Staphylococcus epidermidis RP62A]
 gi|293366772|ref|ZP_06613448.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W2(grey)]
 gi|57637404|gb|AAW54192.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis RP62A]
 gi|291319073|gb|EFE59443.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 1436

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 327/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    ++  ++ N K+TN+          + L+V   EG + L ++VS   L+    
Sbjct: 580  VQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVKYYY 638

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EG+++ T    G +  A         EK    +         L+ 
Sbjct: 639  RTPRIPRSLLNEY-REGILIGTACDEGELFTAVMQKDQSEVEKIAKFYDFIEVQPPALYQ 697

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    +  +P++AT N+ +L E D  A  +L+A      
Sbjct: 698  DLMDRELIRDNETLTQIYKRLIDAGKSANIPVIATGNAHYLYEHDAIARKILIASQPGNP 757

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM+  F  L E  A E  V      +  ++   PI  +   
Sbjct: 758  LN----RSTLPEAHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELANKIEKVVPIKDKLFT 813

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               D        E+R  + +  +    +         Q    RL+ EL+ I    FS  +
Sbjct: 814  PRMDGAN----EEIRELSYSNAKKLYGEDL------PQIVIDRLEKELDSIIGNGFSVIY 863

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 864  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFDDGS 922

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 923  VGSGFDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 982

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 983  LFGEDKVFRAGTIGTVAEKTAFGFVKGYLNDQGIHKRGAEIDRLVK-------------- 1028

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1029 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQFPA 1063

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  +    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1064 DDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1117

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            ET                +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1118 ETMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1177

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1178 TDVWLG--------------NAQELIRQGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1222

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
                + K          +  +    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1223 TMEFVRKGR-----GLTDEMVEAMKENNVPDWYLDSCRKI-----KYMFPKAHAAAYVLM 1272

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + AA  T+   + +                                
Sbjct: 1273 AVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1332

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      DF +  + +     ++ G+G   A+ I+EA  
Sbjct: 1333 LTVLEIMNEMAHRGFRLQPISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEARE 1392

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            + PF S ED   +     L+++V++ L   G+L      + QL
Sbjct: 1393 EGPFLSKEDLNKKA---GLSQKVIDYLDELGSLPDL-PDKAQL 1431



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  +++  +++ A     A+A+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTSMSQMDGIPNISAYVEQAAKWGHQALAVTDHNVVQAFPDAHNAAEKHGIKMIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G +  +                     +V  V T  G   
Sbjct: 394 GMEGMLVDDGVPIAYKPTDRNLKDATYVVFDVET-TGLSN 432


>gi|229162754|ref|ZP_04290711.1| DNA polymerase III polC-type [Bacillus cereus R309803]
 gi|228620636|gb|EEK77505.1| DNA polymerase III polC-type [Bacillus cereus R309803]
          Length = 1433

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/934 (18%), Positives = 318/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDGMYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDVAKEIVVTNTQKVASLIGDVHPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPACNVPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKV 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVS---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE ++             +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEE------------DMKSNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   +F +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATEFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 DFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 68.1 bits (165), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|27467858|ref|NP_764495.1| DNA polymerase III PolC [Staphylococcus epidermidis ATCC 12228]
 gi|32469713|sp|Q8CPG6|DPO3_STAES RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|27315403|gb|AAO04537.1|AE016747_34 DNA polymerase III, alpha chain PolC-type [Staphylococcus epidermidis
            ATCC 12228]
          Length = 1442

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 327/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    ++  ++ N K+TN+          + L+V   EG + L ++VS   L+    
Sbjct: 586  VQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVKYYY 644

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EG+++ T    G +  A         EK    +         L+ 
Sbjct: 645  RTPRIPRSLLNEY-REGILIGTACDEGELFTAVMQKDQSEVEKIAKFYDFIEVQPPALYQ 703

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    +  +P++AT N+ +L E D  A  +L+A      
Sbjct: 704  DLMDRELIRDNETLTQIYKRLIDAGKSANIPVIATGNAHYLYEHDAIARKILIASQPGNP 763

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM+  F  L E  A E  V      +  ++   PI  +   
Sbjct: 764  LN----RSTLPEAHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELANKIEKVVPIKDKLFT 819

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               D        E+R  + +  +    +         Q    RL+ EL+ I    FS  +
Sbjct: 820  PRMDGAN----EEIRELSYSNAKKLYGEDL------PQIVIDRLEKELDSIIGNGFSVIY 869

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 870  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFDDGS 928

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 929  VGSGFDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 988

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 989  LFGEDKVFRAGTIGTVAEKTAFGFVKGYLNDQGIHKRGAEIDRLVK-------------- 1034

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1035 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQFPA 1069

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  +    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1070 DDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1123

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            ET                +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1124 ETMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1183

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1184 TDVWLG--------------NAQELIRQGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1228

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
                + K          +  +    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1229 TMEFVRKGR-----GLTDEMVEAMKENNVPDWYLDSCRKI-----KYMFPKAHAAAYVLM 1278

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + AA  T+   + +                                
Sbjct: 1279 AVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1338

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      DF +  + +     ++ G+G   A+ I+EA  
Sbjct: 1339 LTVLEIMNEMAHRGFRLQPISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEARE 1398

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            + PF S ED   +     L+++V++ L   G+L      + QL
Sbjct: 1399 EGPFLSKEDLNKKA---GLSQKVIDYLDELGSLPDL-PDKAQL 1437



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  +++  +++ A     A+A+TD N + +  +    A   GI+ I 
Sbjct: 340 VEFHLHTSMSQMDGIPNISAYVEQAAKWGHQALAVTDHNVVQAFPDAHNAAEKHGIKMIY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G +  +                     +V  V T  G   
Sbjct: 400 GMEGMLVDDGVPIAYKPTDRNLKDATYVVFDVET-TGLSN 438


>gi|69246860|ref|ZP_00604152.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
            subunit, Gram-positive type [Enterococcus faecium DO]
 gi|257882946|ref|ZP_05662599.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257889275|ref|ZP_05668928.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260560113|ref|ZP_05832291.1| DNA polymerase III [Enterococcus faecium C68]
 gi|293560202|ref|ZP_06676704.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E1162]
 gi|314937503|ref|ZP_07844836.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
 gi|314942162|ref|ZP_07849016.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
 gi|314947498|ref|ZP_07850913.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
 gi|314951485|ref|ZP_07854534.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
 gi|314992575|ref|ZP_07857993.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
 gi|314995490|ref|ZP_07860590.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
 gi|68195041|gb|EAN09504.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
            subunit, Gram-positive type [Enterococcus faecium DO]
 gi|257818604|gb|EEV45932.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257825635|gb|EEV52261.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260073948|gb|EEW62272.1| DNA polymerase III [Enterococcus faecium C68]
 gi|291605874|gb|EFF35306.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E1162]
 gi|313590324|gb|EFR69169.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
 gi|313592867|gb|EFR71712.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
 gi|313596325|gb|EFR75170.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
 gi|313599085|gb|EFR77930.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
 gi|313643144|gb|EFS07724.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
 gi|313646048|gb|EFS10628.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
          Length = 1452

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 178/940 (18%), Positives = 336/940 (35%), Gaps = 190/940 (20%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +    Q N  +             + +L     G + L +L+S   + +  ++  RI  
Sbjct: 595  NMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSNV-EYFERVPRIPR 653

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NL 186
            S L+++  E L++ +    G I  A      + A  R   +   ++    +Y       L
Sbjct: 654  SQLKKM-RENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYAPLIEQEL 712

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             ++          +V++  + +  +VAT N  +L+EED     +L+        +     
Sbjct: 713  VKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILINSMGG---ANPLNR 769

Query: 247  RVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               PD + +   EM++ F  L E       +ENT +IA  C  ++ V   +    I    
Sbjct: 770  HSLPDVHFRTTDEMLTAFHFLGEETAKEIVVENTNKIADICEEVIPVKDELYTPKIPGSE 829

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D+I   E +  + K + G                +  ++RL  ELN I    FS  +LI 
Sbjct: 830  DEI--SELSYTKAKQMYG------------DPLPEIIQKRLKKELNSINGNGFSVIYLIA 875

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               +  + ++   VG  RGS   S  A    IT+++PL                      
Sbjct: 876  QKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGS 934

Query: 399  -------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  D + E   Y +  +G
Sbjct: 935  GFDMPEKQCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFG 994

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V                            +    D+  +
Sbjct: 995  EDYVYRAGTIGTVADKTAYGYV----------------------------KGYERDNNLQ 1026

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLP 554
                    VDRL   ++   G+ R    H  GI++      +    P+     D  S+  
Sbjct: 1027 ---FRSAEVDRL---AKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWK 1080

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-- 612
             T F+   I    ++K D LG    T+++   D        +D   IP DD E   +   
Sbjct: 1081 TTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDL-----SGIDPQTIPTDDPEVMRIFAG 1134

Query: 613  ------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                        +  GTLGI +  +  +R  LE   P    +++ +  L     +     
Sbjct: 1135 PEVLGVSQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLG-- 1192

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                 N +E I      +  ++     +++Y    +  A L SG +    + +R+    K
Sbjct: 1193 -----NAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNK 1243

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I +E+   +E ++S   +N +      +  ++      Y F K+HAAAY +++ + A+ K
Sbjct: 1244 IPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFK 1295

Query: 781  THYPVEFLAASMTLEMDNVE---------------------------------KIKKFCQ 807
             ++P+ +  A  ++  D+ +                                  + +   
Sbjct: 1296 VYFPILYYCAYFSVRADDFDLVSMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELAN 1355

Query: 808  DARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            +  +   +        +  V+F +  + +     A+  +GT  A+ I+EA  D PF S E
Sbjct: 1356 EMLERGFKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKE 1415

Query: 867  DFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
            D  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1416 DLATR---GKVSKTLIEYMNDNGVLKDLPDENQLSLFDML 1452



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       AG++ + 
Sbjct: 341 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKAGVKILY 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N           +V  V T
Sbjct: 401 GVEANVVDDGVPIAYNDAHEALSEATYVVFDVET 434


>gi|312135559|ref|YP_004002897.1| DNA polymerase III subunit alpha [Caldicellulosiruptor owensensis OL]
 gi|311775610|gb|ADQ05097.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor owensensis
            OL]
          Length = 1402

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 166/880 (18%), Positives = 306/880 (34%), Gaps = 168/880 (19%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
                +LV   +G + L +LVS  +L +   +  RI  S+L ++  +GL++ +   SG I 
Sbjct: 579  YHATILVKNQQGLKNLYKLVSYSHL-EYFYKRPRIPKSFLIQL-KDGLLIGSACESGEIF 636

Query: 157  RAFFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRGYD--RYRESQVVQLAYTHE 208
            RAF    S+   +++ TF           +   +     +  +  R    ++ QL     
Sbjct: 637  RAFLEGKSEEEIEKIATFYDFLEIMPVENNSFLIREGYLKDEESLREINKKIYQLGKKLG 696

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL- 267
              +VAT+++ +          +L        V         P  Y +   EM+  F  L 
Sbjct: 697  KLVVATSDAHYCHPHQRVLRQILKHNQGYNDVEN------DPQLYFRTTDEMLKEFEYLG 750

Query: 268  PEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
            P+A  E  VE   + + +++   PI       + +  ++E  N    KA           
Sbjct: 751  PDACYEVVVENTNKIADMIEDVKPIPDETFPPKIEGAEEEIYNMTMKKAHE--------- 801

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
             I      +  R RL+ ELN I +  F+  +LI    +  +  +   VG  RGS   S+ 
Sbjct: 802  -IYGDPLPEIVRARLEKELNSIIKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVGSSLV 859

Query: 387  AYALTITDIDPLR-----------------------------------------FSLLFE 405
            A    IT+++PL                                            + FE
Sbjct: 860  ATMCGITEVNPLPPHYVCPNCKYSEFITDGSAGCGYDLEDKNCPRCGKKLKKDGHDIPFE 919

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
             FL  D    PD D++F  D +    ++ +  +G   V +  T  ++  K A   V +  
Sbjct: 920  TFLGFDGDKEPDIDLNFSGDYQPIAHKFTEELFGQGYVFRAGTISTVAEKTAHGFVTKYA 979

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            +                       + ++                 +L +SQ   G+ R  
Sbjct: 980  E----------------------EKGLSLHP------------AEILRLSQGCTGVKRTT 1005

Query: 526  STHAAGIVIGDRP--LSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              H  G++I  R   +    P+     S+   +  T F+   I    L+K D LG    T
Sbjct: 1006 GQHPGGLMIVPRDKEIFDFTPIQHPADSEDKSVITTHFDYHAI-SGRLLKLDILGHDDPT 1064

Query: 581  LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +++   D        VD   IP DD +T  + T+   LGI   +         G+     
Sbjct: 1065 VIRMLQDLTG-----VDPRSIPLDDKDTMSIFTSTEALGISPEDID-CEVGTFGIPEFGT 1118

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIA 699
              +  ++   +P     +V  +   +G     +    L+   +   + VI  ++ +M   
Sbjct: 1119 RFVRQMLIETKPKTFAELVRISGLSHGTNVWTNNAQDLVRNGIATLKEVISTRDDIMLYL 1178

Query: 700  Q---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
                +    S    + +R+  G K ++E    +   +              + +    K 
Sbjct: 1179 IQKGVPPKDSFRIMEDVRKGKGLKPEDE-QLLRAHNVP-------------DWYIESCKK 1224

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIK 803
              Y F K+HAAAY +++++ A+ K H+   F A   T+  D+ +             KI+
Sbjct: 1225 ITYMFPKAHAAAYVMMAFRIAYFKVHFKEAFYATYFTVRADDFDYATILNGRDAIRQKIR 1284

Query: 804  --------------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAI 842
                                +   +     ++  P  +N    + F + D  +     A+
Sbjct: 1285 DLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAERFIIKDGGLLIPFNAL 1344

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
              VG   A+ I+EA  +  F S++D   R    K    +L
Sbjct: 1345 PNVGVAAAKSIVEARKEGRFLSVDDLQRRAKLNKQVIEIL 1384



 Score = 75.4 bits (184), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 38/94 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   S   I+   A+    A+AITD   + +  E  + + +  I+ I 
Sbjct: 304 VELHAHTKMSTMDAVCSAEEIIKLAASLGHKAVAITDHGVVQAFPEAQEASKSYNIKVIY 363

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G +  +       + N  +        +V+ V T
Sbjct: 364 GMECYLIDDGAPVVYNPKEGQGFDSTFVVVDVET 397


>gi|261207399|ref|ZP_05922085.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289566679|ref|ZP_06447096.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium D344SRF]
 gi|260078290|gb|EEW65995.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289161538|gb|EFD09421.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium D344SRF]
          Length = 1452

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 178/940 (18%), Positives = 336/940 (35%), Gaps = 190/940 (20%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +    Q N  +             + +L     G + L +L+S   + +  ++  RI  
Sbjct: 595  NMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSNV-EYFERVPRIPR 653

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NL 186
            S L+++  E L++ +    G I  A      + A  R   +   ++    +Y       L
Sbjct: 654  SQLKKM-RENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYAPLIEQEL 712

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             ++          +V++  + +  +VAT N  +L+EED     +L+        +     
Sbjct: 713  VKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILINSMGG---ANPLNR 769

Query: 247  RVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               PD + +   EM++ F  L E       +ENT +IA  C  ++ V   +    I    
Sbjct: 770  HSLPDVHFRTTDEMLTAFHFLGEETAKEIVVENTNKIADICEEVIPVKDELYTPKIPGSE 829

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D+I   E +  + K + G                +  ++RL  ELN I    FS  +LI 
Sbjct: 830  DEI--SELSYTKAKQMYG------------DPLPEIIQKRLKKELNSINGNGFSVIYLIA 875

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               +  + ++   VG  RGS   S  A    IT+++PL                      
Sbjct: 876  QKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGS 934

Query: 399  -------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  D + E   Y +  +G
Sbjct: 935  GFDMPEKQCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFG 994

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V                            +    D+  +
Sbjct: 995  EDYVYRAGTIGTVADKTAYGYV----------------------------KGYERDNNLQ 1026

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLP 554
                    VDRL   ++   G+ R    H  GI++      +    P+     D  S+  
Sbjct: 1027 ---FRSAEVDRL---AKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWK 1080

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-- 612
             T F+   I    ++K D LG    T+++   D        +D   IP DD E   +   
Sbjct: 1081 TTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDL-----SGIDPQTIPTDDPEVMRIFAG 1134

Query: 613  ------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                        +  GTLGI +  +  +R  LE   P    +++ +  L     +     
Sbjct: 1135 PEVLGVSQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLG-- 1192

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                 N +E I      +  ++     +++Y    +  A L SG +    + +R+    K
Sbjct: 1193 -----NAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNK 1243

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I +E+   +E ++S   +N +      +  ++      Y F K+HAAAY +++ + A+ K
Sbjct: 1244 IPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFK 1295

Query: 781  THYPVEFLAASMTLEMDNVE---------------------------------KIKKFCQ 807
             ++P+ +  A  ++  D+ +                                  + +   
Sbjct: 1296 VYFPILYYCAYFSVRADDFDLVSMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELAN 1355

Query: 808  DARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            +  +   +        +  V+F +  + +     A+  +GT  A+ I+EA  D PF S E
Sbjct: 1356 EMLERGFKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKE 1415

Query: 867  DFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
            D  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1416 DLATR---GKVSKTLIEYMNDNGVLKDLPDENQLSLFDML 1452



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       AG++ + 
Sbjct: 341 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKAGVKILY 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N           +V  V T
Sbjct: 401 GVEANVVDDGVPIAYNDAHEALSEATYVVFDVET 434


>gi|73919252|sp|Q5HPS7|DPO3_STAEQ RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|329736245|gb|EGG72517.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis VCU028]
 gi|329736547|gb|EGG72813.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis VCU045]
          Length = 1438

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 327/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    ++  ++ N K+TN+          + L+V   EG + L ++VS   L+    
Sbjct: 582  VQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVKYYY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EG+++ T    G +  A         EK    +         L+ 
Sbjct: 641  RTPRIPRSLLNEY-REGILIGTACDEGELFTAVMQKDQSEVEKIAKFYDFIEVQPPALYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    +  +P++AT N+ +L E D  A  +L+A      
Sbjct: 700  DLMDRELIRDNETLTQIYKRLIDAGKSANIPVIATGNAHYLYEHDAIARKILIASQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM+  F  L E  A E  V      +  ++   PI  +   
Sbjct: 760  LN----RSTLPEAHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELANKIEKVVPIKDKLFT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               D        E+R  + +  +    +         Q    RL+ EL+ I    FS  +
Sbjct: 816  PRMDGAN----EEIRELSYSNAKKLYGEDL------PQIVIDRLEKELDSIIGNGFSVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFDDGS 924

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 985  LFGEDKVFRAGTIGTVAEKTAFGFVKGYLNDQGIHKRGAEIDRLVK-------------- 1030

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1031 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQFPA 1065

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  +    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1119

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            ET                +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 ETMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1180 TDVWLG--------------NAQELIRQGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1224

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
                + K          +  +    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1225 TMEFVRKGR-----GLTDEMVEAMKENNVPDWYLDSCRKI-----KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + AA  T+   + +                                
Sbjct: 1275 AVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1334

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      DF +  + +     ++ G+G   A+ I+EA  
Sbjct: 1335 LTVLEIMNEMAHRGFRLQPISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEARE 1394

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            + PF S ED   +     L+++V++ L   G+L      + QL
Sbjct: 1395 EGPFLSKEDLNKKA---GLSQKVIDYLDELGSLPDL-PDKAQL 1433



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  +++  +++ A     A+A+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTSMSQMDGIPNISAYVEQAAKWGHQALAVTDHNVVQAFPDAHNAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G +  +                     +V  V T  G   
Sbjct: 396 GMEGMLVDDGVPIAYKPTDRNLKDATYVVFDVET-TGLSN 434


>gi|251810695|ref|ZP_04825168.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805855|gb|EES58512.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
          Length = 1442

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 327/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    ++  ++ N K+TN+          + L+V   EG + L ++VS   L+    
Sbjct: 586  VQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVKYYY 644

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EG+++ T    G +  A         EK    +         L+ 
Sbjct: 645  RTPRIPRSLLNEY-REGILIGTACDEGELFTAVMQKDQSEVEKIAKFYDFIEVQPPALYQ 703

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    +  +P++AT N+ +L E D  A  +L+A      
Sbjct: 704  DLMDRELIRDNETLTQIYKRLIDAGKSANIPVIATGNAHYLYEHDAIARKILIASQPGNP 763

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM+  F  L E  A E  V      +  ++   PI  +   
Sbjct: 764  LN----RSTLPEAHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELANKIEKVVPIKDKLFT 819

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               D        E+R  + +  +    +         Q    RL+ EL+ I    FS  +
Sbjct: 820  PRMDGAN----EEIRELSYSNAKKLYGEDL------PQIVIDRLEKELDSIIGNGFSVIY 869

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 870  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFDDGS 928

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 929  VGSGFDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 988

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 989  LFGEDKVFRAGTIGTVAEKTAFGFVKGYLNDQGIHKRGAEIDRLVK-------------- 1034

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1035 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQFPA 1069

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  +    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1070 DDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1123

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            ET                +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1124 ETMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1183

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1184 TDVWLG--------------NAQELIRQGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1228

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
                + K          +  +    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1229 TMEFVRKGR-----GLTDEMVEAMKENNVPDWYLDSCRKI-----KYMFPKAHAAAYVLM 1278

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + AA  T+   + +                                
Sbjct: 1279 AVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKEMYSRYMDLGKKEKDV 1338

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      DF +  + +     ++ G+G   A+ I+EA  
Sbjct: 1339 LTVLEIMNEMAHRGFRLQPISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEARE 1398

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            + PF S ED   +     L+++V++ L   G+L      + QL
Sbjct: 1399 EGPFLSKEDLNKKA---GLSQKVIDYLDELGSLPDL-PDKAQL 1437



 Score = 75.4 bits (184), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  +++  +++ A     A+A+TD N + +  +    A   GI+ I 
Sbjct: 340 VEFHLHTSMSQMDGIPNISAYVEQAAKWGHQALAVTDHNVVQAFPDAHIAAEKHGIKMIY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G +  +                     +V  V T  G   
Sbjct: 400 GMEGMLVDDGVPIAYKPTDRNLKDATYVVFDVET-TGLSN 438


>gi|282876304|ref|ZP_06285171.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis SK135]
 gi|281295329|gb|EFA87856.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis SK135]
          Length = 1438

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 327/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    ++  ++ N K+TN+          + L+V   EG + L ++VS   L+    
Sbjct: 582  VQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVKYYY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EG+++ T    G +  A         EK    +         L+ 
Sbjct: 641  RTPRIPRSLLNEY-REGILIGTACDEGELFTAVMQKDQSEVEKIAKFYDFIEVQPPALYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    +  +P++AT N+ +L E D  A  +L+A      
Sbjct: 700  DLMDRELIRDNETLTQIYKRLIDAGKSANIPVIATGNAHYLYEHDAIARKILIASQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM+  F  L E  A E  V      +  ++   PI  +   
Sbjct: 760  LN----RSTLPEAHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELANKIEKVVPIKDKLFT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               D        E+R  + +  +    +         Q    RL+ EL+ I    FS  +
Sbjct: 816  PRMDGAN----EEIRELSYSNAKKLYGEDL------PQIVIDRLEKELDSIIGNGFSVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFDDGS 924

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 985  LFGEDKVFRAGTIGTVAEKTAFGFVKGYLNDQGIHKRGAEIDRLVK-------------- 1030

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1031 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQFPA 1065

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  +    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1119

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            ET                +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 ETMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1180 TDVWLG--------------NAQELIRQGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1224

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
                + K          +  +    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1225 TMEFVRKGR-----GLTDEMVEAMKENNVPDWYLDSCRKI-----KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + AA  T+   + +                                
Sbjct: 1275 AVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKEMYSRYMDLGKKEKDV 1334

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      DF +  + +     ++ G+G   A+ I+EA  
Sbjct: 1335 LTVLEIMNEMAHRGFRLQPISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEARE 1394

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            + PF S ED   +     L+++V++ L   G+L      + QL
Sbjct: 1395 EGPFLSKEDLNKKA---GLSQKVIDYLDELGSLPDL-PDKAQL 1433



 Score = 75.4 bits (184), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  +++  +++ A     A+A+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTSMSQMDGIPNISAYVEQAAKWGHQALAVTDHNVVQAFPDAHIAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G +  +                     +V  V T  G   
Sbjct: 396 GMEGMLVDDGVPIAYKPTDRNLKDATYVVFDVET-TGLSN 434


>gi|9630258|ref|NP_046685.1| putative DNA polymerase [Bacillus phage SPBc2]
 gi|16079093|ref|NP_389916.1| DNA polymerase; phage SPbeta [Bacillus subtilis subsp. subtilis str.
            168]
 gi|221309940|ref|ZP_03591787.1| hypothetical protein Bsubs1_11236 [Bacillus subtilis subsp. subtilis
            str. 168]
 gi|221314262|ref|ZP_03596067.1| hypothetical protein BsubsN3_11157 [Bacillus subtilis subsp. subtilis
            str. NCIB 3610]
 gi|221319184|ref|ZP_03600478.1| hypothetical protein BsubsJ_11083 [Bacillus subtilis subsp. subtilis
            str. JH642]
 gi|221323460|ref|ZP_03604754.1| hypothetical protein BsubsS_11212 [Bacillus subtilis subsp. subtilis
            str. SMY]
 gi|81555926|sp|O31902|YORL_BACSU RecName: Full=Probable DNA polymerase yorL
 gi|2634427|emb|CAB13926.1| putative DNA polymerase; phage SPbeta [Bacillus subtilis subsp.
            subtilis str. 168]
 gi|3025611|gb|AAC13106.1| putative DNA polymerase [Bacillus phage SPbeta]
          Length = 1305

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 197/1018 (19%), Positives = 403/1018 (39%), Gaps = 131/1018 (12%)

Query: 15   QVHSSYS---LLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQKACAAGIQ 68
              H+  S   LL+   S+  +L      +   +AITD   L +   A+   ++    G  
Sbjct: 5    HCHTDRSNIRLLDSTNSVKELLKTAVKMEYKGLAITDHEVLSAHLDAIRTVREMKKKGDM 64

Query: 69   P----IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            P    +I       +    ++ +  K+     P  ++L    +G+++L  L S+ +    
Sbjct: 65   PEDFKLILGNEAYLVDSLEEVRDNYKSGVTKFPHFLMLAMDPKGHEQLRILSSQAWENSF 124

Query: 125  GKQS------VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF-------NSSQ------ 165
               +      V+  +  L       +I  T      ++              SQ      
Sbjct: 125  YTGTMERVPTVKKDVEELLSKDPGHIIATTACLGSEVNIHLLKIKAFEETGDSQSIKQHK 184

Query: 166  -VAEKRLLTFKKLF-GDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSE 222
                + +    ++F  D+ ++ LQ     ++     +++ +A  ++L ++ T ++ +L  
Sbjct: 185  LKIHEFITWCIEVFGKDKFFIELQPALSEEQIYCNKKLIDIANGYDLQMIVTTDAHYLRP 244

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP-----EALENTVEI 277
            ED   H   +         +++        +++N  E+      +      +A++NT+ I
Sbjct: 245  EDRAIHQAFLNAKDG----EREVDSFYEACFVQNVDEIHERMDYIDKEVIDQAIKNTMLI 300

Query: 278  ARRCSFILQVHAPILPRF-------------------IEKECDDIQKEEENELRNKAVAG 318
                      H PI+P+                      K+  +   E++  L      G
Sbjct: 301  GEMIEDYTIEHEPIIPKMELPNFKLRHLFKPAYDQYEYIKKMSESADEQDRYLLKLIEDG 360

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR------MKFSGYFLIVADFIQWAKKNNI 372
             E +L    + +    +    R++ EL  +           S Y++ V + I     +  
Sbjct: 361  FEEKLKTSELTREAFHK-ILNRINVELGELWEISQKLNQSMSSYYITVREIINIIWDDEC 419

Query: 373  ----PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                 VG  RGS AG +  Y L  T I+P+++ L   R ++  R  +PD DID    +R 
Sbjct: 420  GGDSLVGAARGSAAGYLVNYLLDNTQINPMQYDLPHWRHIHKSRPDLPDIDIDTEGSKRQ 479

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            ++++ ++ ++G +RV QI TFG+  +K+AL+   R L +       L  +IP +      
Sbjct: 480  KILKALRERFGDKRVLQIATFGTEGSKSALQTACRGLGIDNDISQYLSGMIPFERGSNWP 539

Query: 489  LQA-IADDSR-----FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            L+     D        +E          L E + K+EGL    S+HAAG++I +   ++ 
Sbjct: 540  LKHCFYGDKETGRKPIKEFIREVEQYPNLKETALKIEGLTNKRSSHAAGVIIFNDEYTKS 599

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKV----- 596
              M +  +    +TQFNM   E  G +KFD L ++ L  ++ +LD  +    ++      
Sbjct: 600  NAMMKTPK-GAYITQFNMGDSEAMGSVKFDLLTIEALDKIRVTLDQLIENNEIEWQGSLK 658

Query: 597  -------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                      +I ++D + + +      + +FQ  +    Q++  ++P  + +     SL
Sbjct: 659  ETYNKYIHPDVIEYEDDKLWEMAGNGEIMDLFQFSTEVGHQSVVKVKPKNLLEAAVTNSL 718

Query: 650  YR---PGPIDNIVVYNNRKNGKEKI----------VSIHPLIDPMLKETQGVIIYQEQVM 696
             R    G    +  Y   KN   K                +++  LK+  GV   QE VM
Sbjct: 719  MRLMSDGEEQPVDTYVKYKNNLNKWYEEMTRYGLSEKEIRVMERHLKDIYGVADTQEVVM 778

Query: 697  QIAQ--LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE-LL 753
            Q+     ++ + + E++ LR+++ KK ++ + + +E F     + G S  +   ++    
Sbjct: 779  QMVMDKDIANFDIKESNYLRKSIAKKKEDVLKEVEELFFKKGKEIGTSDNLLNYVWNVQF 838

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHY-PVEFLAASMTLEMDNVE------------ 800
             +   Y F+  H  AY++I+ Q   +   Y P+ +  A +T+    ++            
Sbjct: 839  KRQFGYSFSLLHTLAYSIIALQELNLNYRYNPLYWNTACLTVNSGGIDTEDTKDNKKTAA 898

Query: 801  ----KIKKFCQDARQFNIQIMPPSVNTPCVDFK--VGDNRIYYSLAAIKGVGTTTARHIM 854
                K+     + RQ  I+I  P +N     F+  + +N I + L  + G+G     HI+
Sbjct: 899  TNYGKVASAIGNIRQRGIKIDLPDINKADFGFRTDINNNSILFGLKGMNGIGDDVIHHIV 958

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRR-VLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
                ++P+    DF  R+    + ++  +  L+  G  D FG +R +++++  ++   
Sbjct: 959  ---LNRPYSDFNDFIERMFKSGIIKKGQVIQLIKGGCFDSFG-NRQEIMKAFISLISE 1012


>gi|314933443|ref|ZP_07840808.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            caprae C87]
 gi|313653593|gb|EFS17350.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            caprae C87]
          Length = 1442

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 327/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQ +    +   ++ N K+TN+          + L+V   EG + L ++VS   L+    
Sbjct: 586  IQQMKELGVLNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVKYYY 644

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EG+++ T    G +  A         EK    +         L+ 
Sbjct: 645  RTPRIPRSLLNEY-REGILVGTACDEGELFTAVMQKDQSEVEKIAKYYDFIEVQPPALYQ 703

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          ++++   +  +P++AT N  +L E D  A  +L+A      
Sbjct: 704  DLMDRELIRDHETLTEIYQRLIEAGESANIPVIATGNVHYLYEHDAIARKILIASQPGNP 763

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM+  F  L E  A E  V      +  ++   PI  +   
Sbjct: 764  LN----RSTLPEAHFRTTDEMLDEFHFLGEEKAHEIVVRNTNELAERIERVVPIKDKLFT 819

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +       +E+R  + +  +    +         Q    RL+ EL  I    FS  +
Sbjct: 820  PRMEGAN----DEIRELSYSNAKKLYGEDL------PQIVIDRLEKELASIIGNGFSVIY 869

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 870  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFDDGS 928

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 929  VGSGFDLPDKKCPTCGNDLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 988

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 989  LFGEDKVFRAGTIGTVAEKTAFGFVKGYLNDQGIHKRGAEIDRLVK-------------- 1034

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1035 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQFPA 1069

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  +    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1070 DDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1123

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            +T                +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1124 DTMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTYSELVQISGLSHG 1183

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1184 TDVWLG--------------NAQELIRQGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1228

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
                + K          +  +    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1229 TMEFVRKGR-----GLTDEMVEAMKENDVPDWYLDSCRKI-----KYMFPKAHAAAYVLM 1278

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + AA  T+   + +                                
Sbjct: 1279 AVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1338

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      DF + ++ +     A+ G+G   A+ I+EA  
Sbjct: 1339 LTVLEIMNEMAHRGFRMQPISLEKSQAFDFIIEEDTLIPPFVAVPGLGENVAKRIVEARE 1398

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            + PF S ED   +     L+++V++ L   G+L      + QL
Sbjct: 1399 EGPFLSKEDLNKKA---GLSQKVIDYLDEMGSLPGL-PDKAQL 1437



 Score = 77.7 bits (190), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++++ +++ A     AIA+TD N + +  +    A   GI+ I 
Sbjct: 340 VEFHLHTAMSQMDGIPNISSYVEQAAEWGHSAIAVTDHNVVQAFPDAHNAAEKHGIKMIY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G +  +                     +V  V T  G   
Sbjct: 400 GMEGMLVDDGVPIAYKPTDRVLKDATYVVFDVET-TGLSN 438


>gi|330004312|ref|ZP_08304870.1| DNA polymerase III, alpha subunit [Klebsiella sp. MS 92-3]
 gi|328536684|gb|EGF63006.1| DNA polymerase III, alpha subunit [Klebsiella sp. MS 92-3]
          Length = 790

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 233/753 (30%), Positives = 358/753 (47%), Gaps = 54/753 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-----GIQ 68
           L V + +SL E AL  + +          AI   DT +L S +   Q A        G++
Sbjct: 4   LMVRTDFSLGESALKASRVAKAAKELGYSAIISADTMSLASIIPLQQSAGDDLAVICGVR 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            +I      +           + P      + S   L+   EGY+ L EL++     +Q 
Sbjct: 64  LVISDNPFYEAAVRKAKEEGSEIPVCKLGRLYSFTALIKNDEGYKDLCELMTLGNRREQF 123

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYV 184
               RI L  L E  ++G I+L       I     F       K L    ++   D  Y 
Sbjct: 124 HFFPRISLEQLAETYSKGNILLLTSDRDSIFHRQDF------VKILTKLLEVGGRDNFYS 177

Query: 185 NLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            +       YD+    + +++A   ++  VA   + +  EED +  D+   V ++    Q
Sbjct: 178 VVYPIATPLYDQL-NMKAMKVANALKIAPVAFYPAYYEKEEDADLRDIAHMVINNIKTDQ 236

Query: 243 KDRPRVTPDHY--LKNRSEMV---SIFS------DLPEALENTV--EIARRCSFILQVHA 289
             R  +       ++NR  ++     FS       +  A+ N    EI   CS+      
Sbjct: 237 PYRFHIPHQRDNSIQNRKHLLVRLMEFSKRMGIEGISSAMVNETQDEIIAACSWRWHEMP 296

Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELN 346
             LP   E E D         L   A  GL+ RL     G        Q Y  RL +EL+
Sbjct: 297 VSLPVMAEDEGDT--------LTRMAAEGLKRRLTTLEFGWKPPAEQYQVYINRLRYELS 348

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
           V+ ++ F GYFL+V + + WA+K +IPVGPGRGS AGS+ A+A+ IT+IDPLR  LLFER
Sbjct: 349 VLKKLGFCGYFLMVENLLSWARKQDIPVGPGRGSSAGSLVAWAIGITNIDPLRHGLLFER 408

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           F+NP+R+ +PD D+DF Q +R  V+ Y++  YG + VA I  F  L   +ALRD  R   
Sbjct: 409 FINPERLDLPDADLDFSQAQRPRVLEYLEEHYGEKYVAGIPNFSYLGMASALRDTARIYG 468

Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
           +    +    +L P D       +         +   A+P      + + KL+ L R   
Sbjct: 469 VSTEDMAVSKQLKPFDDEGLTLEETREQLGALDKYAKANPEA---FDAACKLQSLMRSYG 525

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            HAAG+++   PL++  P+   +R+ +    F+ ++ E  GLIK D LGL TL LL  + 
Sbjct: 526 KHAAGVIVSGVPLTERTPVE--LRNGVRCIAFDKRFCESMGLIKLDVLGLATLDLLALAK 583

Query: 587 DFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM----QPDCIE 641
            ++ +   + V+L  IP DD      +    T G+FQ ES GMR  L+ +    +P   E
Sbjct: 584 RYIKENEGIDVNLDAIPLDDKRVLEGMALGETTGVFQFESGGMRNLLKNLGSGIKPMSFE 643

Query: 642 DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
             +A  +LYRPGP+ + ++  Y +   G E   S+HP +D + KET GV++YQEQ+M+ +
Sbjct: 644 MAVATTALYRPGPMQSGMMDTYVSVARGYEDAHSLHPSLDELTKETNGVLVYQEQIMKAS 703

Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
           Q+L+G+SLSEAD++R+A+GKK  E+M K    F
Sbjct: 704 QILAGFSLSEADMVRKAIGKKDIEKMKKIGADF 736


>gi|297584076|ref|YP_003699856.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10]
 gi|297142533|gb|ADH99290.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10]
          Length = 1433

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 190/944 (20%), Positives = 325/944 (34%), Gaps = 202/944 (21%)

Query: 57   EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            +  + A   GI             D  K                +    AEG + L +LV
Sbjct: 577  KMVRDAVEKGITTHSALNDQSSPDDYKK---------QRPNHCTIYAKNAEGLKNLYKLV 627

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S+ ++ D   +  R+  S L E   EGL++ +    G +       + +  E     +  
Sbjct: 628  SKAHI-DYFFRVPRLPKSVLVE-HREGLLIGSACDQGEVFDGLMQKAPEEVESTAAFYDF 685

Query: 176  -KLFGDRLYVNLQRHRGYDRYRE-----SQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++     Y +L          E       +++L  T   P+VAT N  +L+EED+    
Sbjct: 686  LEVMPPSNYQHLIEKEIIRDELELKSVIKNLIKLGETVNKPVVATGNVHYLNEEDHVYRK 745

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL--ENTVEIARRCSFILQV 287
            +L+A       +        P  + +  +EM+  FS L E    E  V  +R+ +  +  
Sbjct: 746  ILIASQGG---ANPLNRITLPKVHFRTTNEMLDCFSFLSEEKRQEIVVTNSRKIADEIDE 802

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              PI         +      + E+R       +      +I      +   +RL+ EL  
Sbjct: 803  IKPIPDDLYTPHIEGA----DEEMRQMCYDRAK------SIYGDPLPELVEKRLEKELTS 852

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------- 399
            I    FS  +LI    ++ +  +   VG  RGS   S  A    IT+++PL         
Sbjct: 853  IISNGFSVIYLISQKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPSC 911

Query: 400  ---------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDR 426
                                               + FE FL      +PD D++F  + 
Sbjct: 912  QYSYFFNDGSVGSGFDLPDKDCEKCGTPYEKDGHDIPFETFLGFKGDKVPDIDLNFSGEY 971

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +     Y ++ +G + V +  T  ++  K A   V               K    D    
Sbjct: 972  QPVAHNYTKDLFGEDYVYRAGTITTVADKTAYGYV---------------KGYEGDMGM- 1015

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVP 544
                           +L    +DRL+       G+ R    H  GI++      +    P
Sbjct: 1016 ---------------QLKGAEIDRLVS---GCTGVKRSTGQHPGGIIVVPDHLDIYDFSP 1057

Query: 545  MY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            +     D  S+   T F+   I    L+K D LG    T+++   D        +D   I
Sbjct: 1058 IQFPADDDGSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGMDPKDI 1111

Query: 602  PFDDHETYHL--------------LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            P DD E + L              +   GT GI +  +  +RQ LE  +P    +++ + 
Sbjct: 1112 PVDDPEVFKLFSGTESLGVKEEDIMCKTGTFGIPEFGTRFVRQMLEETKPSTFSELVQIS 1171

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSG 704
             L       ++ + N              LI     E + VI  ++ +M       L   
Sbjct: 1172 GLSHG---SDVWLNNAA-----------DLIAAGTCELKDVIGCRDDIMVYLIYQGLEHS 1217

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
             +    + +R+  G    E +++ K        KNG+      +  ++      Y F K+
Sbjct: 1218 LAFKIMEFVRKGKGL-DPEWIEEMK--------KNGVPDWYIQSCLKI-----KYMFPKA 1263

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQ 815
            HAAAY +++ + A+ K H+P+ F AA  T+  D+ E          I+K  ++     + 
Sbjct: 1264 HAAAYVLMAIRIAYFKVHHPMMFYAAYFTVRADDFELDTMIRGSATIRKRIEEIYSKGLD 1323

Query: 816  IMPPS-------------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
              P                             +   +F+V +N +     A+ GVGT  A
Sbjct: 1324 ATPKEKSVLTVLELALEMTMRGFSFKKVDLYRSKASEFQVEENALLPPFDALTGVGTNAA 1383

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              I+EA  D  F S E+   R    K+ + VLE+L   G LD  
Sbjct: 1384 LSIVEARKDGEFLSKENLRER---SKITKTVLENLDDHGCLDGM 1424



 Score = 74.2 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 67/375 (17%), Positives = 125/375 (33%), Gaps = 46/375 (12%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++   ++   +++       AIAITD     +  E        GI+ I 
Sbjct: 333 VELHMHSTMSQMDAVTNVGRYVEQAKKWGHHAIAITDHAGAQAFPEAYSAGKKNGIKIIY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G + ++         +           +V  V T  G   +   ++    +  QG + + 
Sbjct: 393 GVEANLVDDGVPIAYHPSDRDLMEDTYVVFDVET-TGLSAVYNTIIELAAVKVQGGEIID 451

Query: 131 ICLSWL--QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL----------LTFKKLF 178
              S+    E  +  +I LTG +   +  A   +      K              F   F
Sbjct: 452 RFESFANPHEPLSPTIIDLTGITDDMVADAPEIHDVLKDFKAWCGNDILVAHNAAFDMAF 511

Query: 179 GDRLYVNLQRHRG--------------YDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
            D  Y      +               Y  ++  ++  L     + LV+ + ++     D
Sbjct: 512 LDAGYQKAGMDKAANPVIDTLEMGRMLYPTFKNYRLNTLCKKFNIELVSHHRAI----YD 567

Query: 225 YEA--H----DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            EA  H     V  AV            + +PD Y K R    +I++   E L+N  ++ 
Sbjct: 568 AEATGHLLWKMVRDAVEKGITTHSALNDQSSPDDYKKQRPNHCTIYAKNAEGLKNLYKLV 627

Query: 279 RRCSFILQVHAPILPRFIEKECDDI--------QKEEENELRNKAVAGLEVRLAQGAIAK 330
            +         P LP+ +  E  +         Q E  + L  KA   +E   A     +
Sbjct: 628 SKAHIDYFFRVPRLPKSVLVEHREGLLIGSACDQGEVFDGLMQKAPEEVESTAAFYDFLE 687

Query: 331 GYHAQDYRQRLDFEL 345
                +Y+  ++ E+
Sbjct: 688 VMPPSNYQHLIEKEI 702


>gi|242242547|ref|ZP_04796992.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
 gi|242233974|gb|EES36286.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
          Length = 1442

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 327/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    ++  ++ N K+TN+          + L+V   EG + L ++VS   L+    
Sbjct: 586  VQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVKYYY 644

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EG+++ T    G +  A         EK    +         L+ 
Sbjct: 645  RTPRIPRSLLNEY-REGILIGTACDEGELFTAVMQKDQSEVEKIAKFYDFIEVQPPALYQ 703

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    +  +P++AT N+ +L E D  A  +L+A      
Sbjct: 704  DLMDRELIRDNETLTQIYKRLIDAGKSANIPVIATGNAHYLFEHDAIARKILIASQPGNP 763

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM+  F  L E  A E  V      +  ++   PI  +   
Sbjct: 764  LN----RSTLPEAHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELANKIEKVVPIKDKLFT 819

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               D        E+R  + +  +    +         Q    RL+ EL+ I    FS  +
Sbjct: 820  PRMDGAN----EEIRELSYSNAKKLYGEDL------PQIVIDRLEKELDSIIGNGFSVIY 869

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 870  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFDDGS 928

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 929  VGSGFDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 988

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 989  LFGEDKVFRAGTIGTVAEKTAFGFVKGYLNDQGIHKRGAEIDRLVK-------------- 1034

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1035 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQFPA 1069

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  +    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1070 DDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1123

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            ET                +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1124 ETMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1183

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1184 TDVWLG--------------NAQELIRQGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1228

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
                + K          +  +    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1229 TMEFVRKGR-----GLTDEMVEAMKENNVPDWYLDSCRKI-----KYMFPKAHAAAYVLM 1278

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + AA  T+   + +                                
Sbjct: 1279 AVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1338

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      DF +  + +     ++ G+G   A+ I+EA  
Sbjct: 1339 LTVLEIMNEMAHRGFRLQPISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEARE 1398

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            + PF S ED   +     L+++V++ L   G+L      + QL
Sbjct: 1399 EGPFLSKEDLNKKA---GLSQKVIDYLDELGSLPDL-PDKAQL 1437



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  +++  +++ A     A+A+TD N + +  +    A   GI+ I 
Sbjct: 340 VEFHLHTSMSQMDGIPNISAYVEQAAKWGHRALAVTDHNVVQAFPDAHNAAEKHGIKMIY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G +  +                     +V  V T  G   
Sbjct: 400 GMEGMLVDDGVPIAYKPTDRNLKDATYVVFDVET-TGLSN 438


>gi|228475024|ref|ZP_04059752.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            hominis SK119]
 gi|228271009|gb|EEK12397.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            hominis SK119]
          Length = 1438

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 172/928 (18%), Positives = 320/928 (34%), Gaps = 199/928 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLSNEDAYKRARPTHVTLIVQNQDGLKNLFKIVS-ASLVKYYYRTPRIPRSLLNEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDR 194
            EG+++ T    G +  A         EK    +        KL+ D +   L R      
Sbjct: 655  EGILVGTACDEGELFTAVMQRDQSEVEKIAKYYDFIEVQPPKLYQDLIDRELIRDTETLY 714

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                ++++   +  +P++AT N+ +L E D  A  +L+A      ++        P+ + 
Sbjct: 715  EIYDRILKAGESTGIPVIATGNAHYLFEHDAIARKILIASQPGNPLN----RSTLPEAHF 770

Query: 255  KNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +   EM+  F  L E  A +  V+     +  ++   PI  +      +        E+R
Sbjct: 771  RTTDEMLDEFHFLGEDKAYDIVVKNTNELADRIEKVIPIKDQLFTPRMEGAN----EEIR 826

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
              +    +              Q    RL+ EL+ I    FS  +LI    ++ +  +  
Sbjct: 827  ELSYTNAKKLYGDDL------PQIVIDRLEKELDSIIGNGFSVIYLISQRLVKKSLDDGY 880

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRF-------------------------------- 400
             VG  RGS   S  A    IT+++PL                                  
Sbjct: 881  LVG-SRGSVGSSFVATMTEITEVNPLPPHYICPHCKTSEFFDDGSVGSGFDLPDKTCETC 939

Query: 401  ---------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                      + FE FL      +PD D++F  + +     Y +  +G ++V +  T G+
Sbjct: 940  GGELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHNYTKVLFGEDKVFRAGTIGT 999

Query: 452  LQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
            +  K A   V      + +    +++DRL K                             
Sbjct: 1000 VAEKTAFGFVKGYLNDQGIHKRGAEIDRLVK----------------------------- 1030

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRSD---LPVTQFNMK 561
                         G+ R    H  GI++      +    P+             T F+  
Sbjct: 1031 ----------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPADDQSAPWMTTHFDFH 1080

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------- 612
             I    ++K D LG    T+++   D        +D   IP DD ET  +          
Sbjct: 1081 SIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDKETMQIFSSPASLGVT 1134

Query: 613  -----TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
                    GT G+ +  +  +RQ LE  +P    +++ +  L     +            
Sbjct: 1135 EEDILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGTDVWLG--------- 1185

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
                 +   LI   + +   VI  ++ +M +  + +G   S A     ++ K        
Sbjct: 1186 -----NAQELIRSGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFKTMESVRKGK-----G 1234

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
              +  I+    N +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ +
Sbjct: 1235 LTDEMINAMKANDVPDWYLDSCLKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHPLYY 1289

Query: 788  LAASMTLEMDNVE---------------------------------KIKKFCQDARQFNI 814
             AA  T+   + +                                  + +   +      
Sbjct: 1290 YAAYFTIRASDFDLITMIKDKESIKNTVKDMYSRYMDLGKKEKDVLTVLEIMNEMAHRGF 1349

Query: 815  QIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
            ++ P S+      DF + D+ +     A+ G+G   A+ I+EA  D PF S ED   +  
Sbjct: 1350 KMQPISLEKSQAFDFIIEDDTLIPPFIAVPGLGENVAKRIVEAREDGPFLSKEDLNKKA- 1408

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQL 901
               L+++++E L   G+L      + QL
Sbjct: 1409 --GLSQKIIEYLDDLGSLPDL-PDKAQL 1433



 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +HSS S ++G  +++  +++ AA    AIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHSSMSQMDGIPNISAYVNQAAAWGHKAIAVTDHNVVQAFPDAHSAAEKNGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G +  +                     +V  V T  G   
Sbjct: 396 GMEGMLVDDGVPIAYKPTDRNLKDATYVVFDVET-TGLSN 434


>gi|253733498|ref|ZP_04867663.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728552|gb|EES97281.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH130]
          Length = 1438

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 325/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 582  VQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 641  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKFYDFIEIQPPALYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 700  DLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 760  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  + A       +         Q    RL+ EL  I    F+  +
Sbjct: 816  PRMEGAN----EEIRELSYANARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 924

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 985  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK-------------- 1030

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1031 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1065

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1119

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E                 +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1180 TDVWLG--------------NAQELIKSGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1224

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +  ++ K          E  I    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1225 IMESVRKGK-----GLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1275 AVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1334

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA  
Sbjct: 1335 LTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEARD 1394

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1395 DGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLD 76
           G +  
Sbjct: 396 GMEGM 400


>gi|227551758|ref|ZP_03981807.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|227179063|gb|EEI60035.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
          Length = 1450

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 177/940 (18%), Positives = 337/940 (35%), Gaps = 190/940 (20%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +    Q N  +             + +L     G + L +L+S   + +  ++  RI  
Sbjct: 593  HMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSNV-EYFERVPRIPR 651

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NL 186
            S L+++  E L++ +    G I  A      + A  R   +   ++    +Y       L
Sbjct: 652  SQLKKM-RENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYAPLIEQEL 710

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             ++          +V++  + +  +VAT N  +L+EED     +L+        +     
Sbjct: 711  VKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDVIYRKILINSMGG---ANPLNR 767

Query: 247  RVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               PD + +   EM++ F  L E       ++NT +IA  C  ++ V   +    I    
Sbjct: 768  HSLPDVHFRTTDEMLTAFHFLGEETAKEIVVDNTNKIADICEEVIPVKDELYTPKIPGSE 827

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D+I   E +  + K + G                +  ++RL+ ELN I    FS  +LI 
Sbjct: 828  DEI--SELSYTKAKQMYG------------DPLPEIIQKRLEKELNSINGNGFSVIYLIA 873

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------- 398
               +  + ++   VG  RGS   S  A    IT+++PL                      
Sbjct: 874  QKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGS 932

Query: 399  -------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  D + E   Y +  +G
Sbjct: 933  GFDMPEKQCPKCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFG 992

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V                            +    D+  +
Sbjct: 993  EDYVYRAGTIGTVADKTAYGYV----------------------------KGYERDNNLQ 1024

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLP 554
                    VDRL   ++   G+ R    H  GI++      +    P+     D  S+  
Sbjct: 1025 ---FRSAEVDRL---AKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWK 1078

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-- 612
             T F+   I    ++K D LG    T+++   D        +D   IP DD E   +   
Sbjct: 1079 TTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDL-----SGIDPQTIPTDDPEVMRIFAG 1132

Query: 613  ------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                        +  GTLGI +  +  +R  LE   P    +++ +  L     +     
Sbjct: 1133 PEVLGVTQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLG-- 1190

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                 N +E I      +  ++     +++Y    +  A L SG +    + +R+    K
Sbjct: 1191 -----NAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLDSGMAFKIMETVRKGQWNK 1241

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I +E+   +E ++S   +N +      +  ++      Y F K+HAAAY +++ + A+ K
Sbjct: 1242 IPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFK 1293

Query: 781  THYPVEFLAASMTLEMDNVE---------------------------------KIKKFCQ 807
             ++P+ +  A  ++  D+ +                                  + +   
Sbjct: 1294 VYFPILYYCAYFSVRADDFDLVSMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELAN 1353

Query: 808  DARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            +  +   +        +  V+F +  + +     A+  +GT  A+ I+EA  D PF S E
Sbjct: 1354 EMLERGFKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKE 1413

Query: 867  DFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
            D  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1414 DLATR---GKVSKTLIEYMNDNGVLKDLPDENQLSLFDML 1450



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       AG++ + 
Sbjct: 339 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKAGVKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N           +V  V T
Sbjct: 399 GVEANVVDDGVPIAYNDAHEALNEATYVVFDVET 432


>gi|118443832|ref|YP_878213.1| DNA polymerase III PolC [Clostridium novyi NT]
 gi|118134288|gb|ABK61332.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            novyi NT]
          Length = 1444

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 173/939 (18%), Positives = 328/939 (34%), Gaps = 178/939 (18%)

Query: 57   EFSQKACAAG------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
                 A A G       + +    +      N K              +++L     G +
Sbjct: 574  RAVDDAKATGDILVHCFKLLKEMNITYLDDLNNKFLGNIDVKKLPTYHLIILAKNQVGLK 633

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L +L+S   L D   +  R+  S L E   EGLI+ +   +G + +A     S    K 
Sbjct: 634  NLYKLISFSNL-DYFYKKPRMPKS-LIEQYKEGLIIGSACEAGEVYKAVLEGKSNEDLKE 691

Query: 171  LLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSE 222
            ++ F      + +  +   +     +  D+ +E   ++ +L   + +P+VAT +  FL  
Sbjct: 692  IIKFYDYLEIQPIMNNEFMLRKGIVKNQDQLKEINRKIYELGINNNMPVVATGDVHFLDP 751

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--R 280
            +D +  ++LMA    +           P  YLK  +EM+  F  L E +   V I    +
Sbjct: 752  KDGKFREILMAGQGFSDAEN------QPPLYLKTTNEMLKEFEYLGEDIAKEVVINNPQK 805

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++   PI       + D  +++  N    KA           +I      +    R
Sbjct: 806  IANAVEFVKPIPDETFPPKIDGAEEDIRNMTLEKAY----------SIYGNPLPKVVHDR 855

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            L+ ELN I    ++  +LI    +  + ++   VG  RGS   S+ A    IT+++ L  
Sbjct: 856  LEKELNSIINNGYAVLYLIAHKLVAKSLEDGYLVG-SRGSVGSSLVATMSDITEVNGLPP 914

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  +    PD D
Sbjct: 915  HYVCPNCKNSEFFTDGSVSSGADLPPKKCPKCGADYNRDGHDIPFETFLGFNGDKEPDID 974

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D + ++ +Y +  +G     +  T G++  K A   V + L              
Sbjct: 975  LNFSGDNQGDIHKYTEVLFGKGHTFKAGTIGTIADKTAYGFVKKYLDE------------ 1022

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDR 537
                               +   ++   ++RL   +Q   G+ R +  H  GI++   D 
Sbjct: 1023 -------------------KNMVVSQAEIERL---TQGCTGVKRTSGQHPGGIMVVPSDN 1060

Query: 538  PLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+     D  SD+  T F+   I    L+K D LG    T+L+   D       
Sbjct: 1061 EIYNFCPIQHPADDANSDIITTHFDYHSI-SGRLLKLDILGHDDPTVLRMLKDITG---- 1115

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D   IP  D +   L T+   LG+   E         G+     + +  ++   +P  
Sbjct: 1116 -LDPIKIPIGDEKVLSLFTSPEALGVTAEELE-CPVGCYGIPEFGTKFVRQMLVDTKPKT 1173

Query: 655  IDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEA 710
              ++V  +   +G +  ++     I       +  I  ++ +M       L    + +  
Sbjct: 1174 FSDLVRISGLSHGTDVWLNNAQYFIKEGYTTLKDCIATRDDIMVYLLHKGLPPKDAFTIM 1233

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + +R+   K + EE +              + +    + +    K   Y F K HA AY 
Sbjct: 1234 EKVRKG--KGLSEEHEAL------------MREHKVPDWYIESCKKIKYMFPKGHAVAYV 1279

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDN-----------------VEKIKKFCQ------ 807
            +++ + A+ K +YP  + A   T+   +                 +++I           
Sbjct: 1280 MMAVRIAYYKVYYPEAYYATYFTVRGIDDFDADLIVKGEEVIKRKMDEINALGNSATQKD 1339

Query: 808  -----------DARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                       +  + NI+ +   +  +    F +  N I   + ++ GVG   A+ I +
Sbjct: 1340 KGLLTNLELAFEMYKRNIKFLKVDIYKSHPTKFLIEGNYIRLPIGSLSGVGLNAAKSIAD 1399

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            A     F S ED   R    K+++ V+E+L   G L+  
Sbjct: 1400 AREGGEFISKEDLRKR---SKVSKTVIEALSEHGCLEGL 1435



 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++G  S  +++++ A    PA+AITD   + +  E    A    I+ I 
Sbjct: 346 VELHMHTQMSAMDGLSSATSLIERAAKWGHPAVAITDHGVVQAFPEAMDAAKKFNIKVIY 405

Query: 72  GC 73
           G 
Sbjct: 406 GV 407


>gi|168187912|ref|ZP_02622547.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum C str. Eklund]
 gi|169294244|gb|EDS76377.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum C str. Eklund]
          Length = 1441

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 173/939 (18%), Positives = 331/939 (35%), Gaps = 178/939 (18%)

Query: 57   EFSQKACAAG------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
                 A A G       + +   ++      N K              +++L     G +
Sbjct: 571  RAVDDAKATGDILVHCFKLLKEMEITSLNDLNNKFLGNIDVKKLPTYHLIILAKNQVGLK 630

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L +L+S   L D   +  R+  S L E   EGLI+ +   +G + +A      +   K 
Sbjct: 631  NLYKLISFSNL-DYFYKKPRMPKS-LIEQYKEGLIIGSACEAGEVYKAVLEGKIEDELKE 688

Query: 171  LLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSE 222
            L+ F      + +  +   +     +  D+ +E   ++ +L   ++LP+VAT +  FL  
Sbjct: 689  LIKFYNYLEIQPIMNNEFMLRKGIVKNEDQLKEINRKIYELGVNNDLPVVATGDVHFLDF 748

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--R 280
            +D +  ++LM     +  +        P  YLK  SEM+  F  L E +   V I    +
Sbjct: 749  KDVKFREILMTGQGFSDAAN------QPPLYLKTTSEMLKEFEYLGEDIAKEVVIYNPQK 802

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++   PI       + D  +++  N    KA            I      +    R
Sbjct: 803  IANEVEFVKPIPDETFPPKIDGAEEDIRNMTLEKAY----------TIYGNPLPKVVHDR 852

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            L+ ELN I    ++  +LI    +  + ++   VG  RGS   S+ A    IT+++ L  
Sbjct: 853  LEKELNSIINNGYAVLYLIAHKLVAKSLEDGYLVG-SRGSVGSSLVATMSDITEVNGLPP 911

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  +    PD D
Sbjct: 912  HYVCPNCKNSEFFTDGSVSSGADLPPKKCPKCGTEYNRNGHDIPFETFLGFNGDKEPDID 971

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D + ++ +Y +  +G     +  T G++  K A   V + L              
Sbjct: 972  LNFSGDNQGDIHKYTEVLFGKGHTFKAGTIGTIADKTAYGFVKKYLDE------------ 1019

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDR 537
                               +   ++   ++RL   +Q   G+ R +  H  GI++   D 
Sbjct: 1020 -------------------KNMVVSQAEIERL---TQGCTGVKRTSGQHPGGIMVVPSDN 1057

Query: 538  PLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+     D  S++  T F+   I    L+K D LG    T+L+   D       
Sbjct: 1058 EIYNFCPIQHPADDSNSEIITTHFDYHSI-SGRLLKLDILGHDDPTVLRMLKDITG---- 1112

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D   IP  D +   L T+   LG+ + E         G+     + +  ++   +P  
Sbjct: 1113 -LDPIKIPIGDEKVLSLFTSPEALGVTEEELE-CPVGCYGIPEFGTKFVRQMLVDTQPKT 1170

Query: 655  IDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEA 710
              ++V  +   +G +  ++     I       +  I  ++ +M       L    + +  
Sbjct: 1171 FSDLVRISGLSHGTDVWLNNAQYFIKEGYTTLKDCIATRDDIMVYLLHKDLEPKDAFTIM 1230

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + +R+   K + EE +              + +    + +    K   Y F K HA AY 
Sbjct: 1231 EKVRKG--KGLSEEHEAL------------MREHKVPDWYIESCKKIKYMFPKGHAVAYV 1276

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDN-----------------VEKIKKFCQ------ 807
            +++ + A+ K +YP  + A   T+   +                 +++I           
Sbjct: 1277 MMAVRIAYYKVYYPQAYYATYFTVRGIDDFDADLIVRGEDVIKRKMDEINSLGNSATQKD 1336

Query: 808  -----------DARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                       +  + NI+ +   +  +    F +  + I   + ++ GVG   A+ I E
Sbjct: 1337 KGLLTNLELAFEMYKRNIKFLKVDIYKSHPTKFLIEGDYIRLPIGSLSGVGLNAAKSIAE 1396

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            A  +  F S ED   R    K+++ V+E+L   G L+  
Sbjct: 1397 ARKEGEFISKEDLRKR---SKVSKTVIEALSEHGCLEGL 1432



 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++G  S  +++++ A    PA+AITD   + +  E    A    I+ I 
Sbjct: 343 VELHMHTQMSAMDGLSSATSLIERAAKWGHPAVAITDHGVVQAFPEAMDAAKKFNIKVIY 402

Query: 72  GC 73
           G 
Sbjct: 403 GV 404


>gi|314936575|ref|ZP_07843922.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            hominis subsp. hominis C80]
 gi|313655194|gb|EFS18939.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            hominis subsp. hominis C80]
          Length = 1438

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 172/928 (18%), Positives = 320/928 (34%), Gaps = 199/928 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E   
Sbjct: 597  NKKLSNEDAYKRARPTHVTLIVQNQDGLKNLFKIVS-ASLVKYYYRTPRIPRSLLNEY-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDR 194
            EG+++ T    G +  A         EK    +        KL+ D +   L R      
Sbjct: 655  EGILVGTACDEGELFTAVMQRDQSEVEKIAKYYDFIEVQPPKLYQDLIDRELIRDTETLY 714

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                ++++   +  +P++AT N+ +L E D  A  +L+A      ++        P+ + 
Sbjct: 715  EIYDRILKAGESTGIPVIATGNAHYLFEHDAIARKILIASQPGNPLN----RSTLPEAHF 770

Query: 255  KNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +   EM+  F  L E  A +  V+     +  ++   PI  +      +        E+R
Sbjct: 771  RTTDEMLDEFHFLGEDKAYDIVVKNTNELADRIEKVIPIKDQLFTPRMEGAN----EEIR 826

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
              +    +              Q    RL+ EL+ I    FS  +LI    ++ +  +  
Sbjct: 827  ELSYTNAKKLYGDDL------PQIVIDRLEKELDSIIGNGFSVIYLISQRLVKKSLDDGY 880

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRF-------------------------------- 400
             VG  RGS   S  A    IT+++PL                                  
Sbjct: 881  LVG-SRGSVGSSFVATMTEITEVNPLPPHYICPHCKTSEFFDDGSVGSGFDLPDKTCETC 939

Query: 401  ---------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                      + FE FL      +PD D++F  + +     Y +  +G ++V +  T G+
Sbjct: 940  GGELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHNYTKVLFGEDKVFRAGTIGT 999

Query: 452  LQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
            +  K A   V      + +    +++DRL K                             
Sbjct: 1000 VAEKTAFGFVKGYLNDQGIHKRGAEIDRLVK----------------------------- 1030

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRSD---LPVTQFNMK 561
                         G+ R    H  GI++      +    P+             T F+  
Sbjct: 1031 ----------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPADDQSAPWMTTHFDFH 1080

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------- 612
             I    ++K D LG    T+++   D        +D   IP DD ET  +          
Sbjct: 1081 SIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDKETMQIFSSPASLGVT 1134

Query: 613  -----TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
                    GT G+ +  +  +RQ LE  +P    +++ +  L     +            
Sbjct: 1135 EEDILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGTDVWLG--------- 1185

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
                 +   LI   + +   VI  ++ +M +  + +G   S A     ++ K        
Sbjct: 1186 -----NAQELIRSGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFKTMESVRKGK-----G 1234

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
              +  I+    N +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ +
Sbjct: 1235 LTDEMINAMKANDVPDWYLDSCLKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHPLYY 1289

Query: 788  LAASMTLEMDNVE---------------------------------KIKKFCQDARQFNI 814
             AA  T+   + +                                  + +   +      
Sbjct: 1290 YAAYFTIRASDFDLITMIKDKESIKNTVKDMYSRYMDLGKKEKDVLTVLEIMNEMAHRGF 1349

Query: 815  QIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
            ++ P S+      DF + D+ +     A+ G+G   A+ I+EA  D PF S ED   +  
Sbjct: 1350 KMQPISLEKSQAFDFIIEDDTLIPPFIAVPGLGENVAKRIVEAREDGPFLSKEDLNKKA- 1408

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQL 901
               L+++++E L   G+L      + QL
Sbjct: 1409 --GLSQKIIEYLDDLGSLPDL-PDKAQL 1433



 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +HSS S ++G  +++  +++ AA    AIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHSSMSQMDGIPNISAYVNQAAAWGHKAIAVTDHNVVQAFPDAHSAAEKNGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G +  +                     +V  V T  G   
Sbjct: 396 GMEGMLVDDGVPIAYKPTDRNLKDATYVVFDVET-TGLSN 434


>gi|15896683|ref|NP_350032.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC
            824]
 gi|15026532|gb|AAK81372.1|AE007841_7 DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC
            824]
 gi|325510847|gb|ADZ22483.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum EA
            2018]
          Length = 1452

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 170/913 (18%), Positives = 310/913 (33%), Gaps = 204/913 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                 ++L     G + L +LVS  +L +   +  RI  S L +  +EGLI+ +  S G 
Sbjct: 619  RTYHAIILAKNYVGLKNLYKLVSYSHL-NYFYKRPRILKS-LYKKYSEGLILGSACSEGE 676

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQV 200
            + +A          + +        D  Y+ +Q     D              +    ++
Sbjct: 677  LFQAILLGKPDEEVEDIAR------DYDYLEIQPLGNDDYLIRNGQVPNKEAIKDINRKI 730

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
            ++L      P+VAT +  F+  ED     +L A                   YL+   EM
Sbjct: 731  IELGEKLNKPVVATGDVHFIDPEDEIYRRILEAGQGFKDADN------QAPLYLRTTEEM 784

Query: 261  VSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
            +  FS L   +A E  V    + S + +  +PI P       D  ++  ++    KA   
Sbjct: 785  LQEFSYLGREKAYEVVVTNTNKISDMCEQISPISPEKCPPHIDGCEQTIKDIAYEKAHE- 843

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
                     +      +  +QRLD EL  I +  FS  ++I    +  + ++   VG  R
Sbjct: 844  ---------LYGDPLPEIVQQRLDKELESIIKNGFSVMYIIAQKLVWKSNEDGYLVG-SR 893

Query: 379  GSGAGSVTAYALTITDIDPLRF-------------------------------------- 400
            GS   S  A    IT+++ L                                        
Sbjct: 894  GSVGSSFVANMTGITEVNSLPPHYRCPKCKYSDFSDYGVKNGFDLPDKTCPVCGEPLTKD 953

Query: 401  --SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               + FE FL  +    PD D++F  + + +  RY +  +G     +  T G++  K A 
Sbjct: 954  GIDIPFETFLGFNGDKEPDIDLNFSGEYQAKAHRYTEVIFGKGTTFKAGTIGTIAEKTAF 1013

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V +  +          K IP + A                          ++ IS+  
Sbjct: 1014 GYVKKYYEE---------KSIPVNKA-------------------------EIIRISRGC 1039

Query: 519  EGLYRHASTHAAGIVIGD--RPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDF 573
             G+ R    H  GI++    R + +  P+     D  SD+  T F+   I++  L+K D 
Sbjct: 1040 TGIKRTTGQHPGGIIVVPKGREIFEFCPVQHPADDPNSDIITTHFDYHSIDQ-NLLKLDI 1098

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLG 619
            LG    T+++   D        ++   IP DD ET  L ++               GT G
Sbjct: 1099 LGHDDPTVIRMLQDITG-----INPHEIPMDDKETMSLFSSTKALGVTPEQINSKVGTFG 1153

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            I +  +  +R  L    P    D+I +  L     +                 +   LID
Sbjct: 1154 IPEFGTKFVRGMLLDTMPKTFSDLICISGLSHGTDVWLG--------------NAKDLID 1199

Query: 680  PMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
              +      +  ++ +M            +    +++R+    K  ++  + +       
Sbjct: 1200 QGIVTLSEAVCTRDDIMIYLIKKGLPPNTAFKIMELVRKGKALKDPKKWAEYEAL----- 1254

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
                + +      +    +   Y F K+HAAAY +++++ AW K H P  + AA  ++  
Sbjct: 1255 ----MREHEVPEWYIDSCRKIKYMFPKAHAAAYVMMAFRIAWFKVHIPKAYYAAYFSIRA 1310

Query: 797  DNVE---------KIKKFCQDARQFNIQIMPPS-------------------------VN 822
               +         K+K+  ++ +    +  P                             
Sbjct: 1311 KAFDAEFMIFGKEKVKQKMKEIQMMGNEAGPKDKDMYDDLEIVLEMYERGFNFLPIDIYK 1370

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRV 881
            +    F V ++ +   + +I G+G   A  I  A   +KP  S++D   R    K+    
Sbjct: 1371 SHATKFLVEEDGLRPPINSISGMGNVAAEGIYNAMQEEKPISSIQDLKKRA---KIGNSA 1427

Query: 882  LESLVFAGALDCF 894
            ++SL   G L   
Sbjct: 1428 IDSLRKFGCLKGL 1440



 Score = 68.5 bits (166), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQP 69
           V L +H+  S ++   S  +++ +  +    +IAITD   + +  E  +        ++ 
Sbjct: 341 VELHMHTKMSQMDAMTSATDLIKRAMSWGMKSIAITDHGVVQAFPEAHKLLGRDNPDMKI 400

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           I G +  +       +TN       T   ++
Sbjct: 401 IYGVEAYLAPDKKPSVTNAKDQSIDTTYCVL 431


>gi|312621985|ref|YP_004023598.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kronotskyensis
            2002]
 gi|312202452|gb|ADQ45779.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
            kronotskyensis 2002]
          Length = 1402

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 165/880 (18%), Positives = 300/880 (34%), Gaps = 168/880 (19%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
                +LV   +G + L +LVS  +L +   +  RI  S L ++  +GL++ +   SG I 
Sbjct: 579  YHATILVKNQQGLKNLYKLVSYSHL-EYFYKRPRIPKSLLIQL-KDGLLIGSACESGEIF 636

Query: 157  RAFFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRGYDRYRE--SQVVQLAYTHE 208
            RAF    S+   +++  F           +   +     +  +  RE   ++  L     
Sbjct: 637  RAFLEGKSEEEIEKIAAFYDFLEIMPVENNSFLIREGYLKDEEDLREINRKIYNLGKKLG 696

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
              +VAT+++ +          +L    H+      +     P  Y +   EM+  F  L 
Sbjct: 697  KLVVATSDAHYCHPHQRILRQIL---KHNQGYDDVEND---PLLYFRTTDEMLKEFEYLG 750

Query: 269  E--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
                 E  VE   + + +++   PI       + +  ++E  N    KA           
Sbjct: 751  SDSCYEVVVENTNKIADMIEDVKPIPDETFPPKIEGAEEEIYNMTMKKAHE--------- 801

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
             I      +  R RL+ ELN I +  F+  +LI    +  +  +   VG  RGS   S+ 
Sbjct: 802  -IYGDPLPEIVRARLEKELNSIIKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVGSSLV 859

Query: 387  AYALTITDIDPLR-----------------------------------------FSLLFE 405
            A    IT+++PL                                            + FE
Sbjct: 860  ATMCGITEVNPLPPHYICPNCKYSEFITDGSVGCGYDLEDKNCPRCGEKLKKDGHDIPFE 919

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
             FL  D    PD D++F  D +    ++ +  +G   V +  T  ++  K A   V +  
Sbjct: 920  TFLGFDGDKEPDIDLNFSGDYQPIAHKFTEELFGQGYVFRAGTISTVAEKTAHGFVTKY- 978

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
                                              E +  +     +L +SQ   G+ R  
Sbjct: 979  ---------------------------------AEEKGLNLHPAEVLRLSQGCTGVKRTT 1005

Query: 526  STHAAGIVIGDRP--LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              H  G++I  R   +    P+     S    +  T F+   I    L+K D LG    T
Sbjct: 1006 GQHPGGLMIVPRDKEIFDFTPIQHPADSTDKSVITTHFDYHAI-SGRLLKLDILGHDDPT 1064

Query: 581  LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +++   D        VD   IP DD  T  + T+   LGI   +         G+     
Sbjct: 1065 VIRMLQDLTG-----VDPRSIPLDDKATMSIFTSTEALGISPEDID-CEVGTFGIPEFGT 1118

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIA 699
              +  ++   +P     +V  +   +G     +    L+   +   + VI  ++ +M   
Sbjct: 1119 RFVRQMLIETKPKTFAELVRISGLSHGTNVWTNNAQDLVRNGIATLKEVISTRDDIMLYL 1178

Query: 700  Q---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
                +    S    + +R+  G K ++E    +   +              + +    K 
Sbjct: 1179 IQKGVPPKDSFRIMEDVRKGKGLKPEDE-QLLRAHNVP-------------DWYIESCKK 1224

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIK 803
              Y F K+HAAAY +++++ A+ K HY   F A   T+  D+ +             KI+
Sbjct: 1225 ITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYFTVRADDFDYATILKGRDAIRQKIR 1284

Query: 804  --------------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAI 842
                                +   +     ++  P  +N    + F + D  +     A+
Sbjct: 1285 DLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAEKFIIKDGGLLIPFNAL 1344

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
              VG   A+ I+EA  +  F S++D   R    K    +L
Sbjct: 1345 PNVGVAAAKSIVEARKEGRFLSVDDLIRRAKLNKQVIEIL 1384



 Score = 75.4 bits (184), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   S   ++   A+    A+AITD   + +  E  + +    I+ I 
Sbjct: 304 VELHAHTKMSAMDAVCSAEELIKLAASMGHRAVAITDHGVVQAFPEAQEASKNCNIKVIY 363

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G +  +       + N  +        +V+ + T
Sbjct: 364 GMECYLIDDGAPVVYNPKEGQGFDSTFVVVDIET 397


>gi|302874658|ref|YP_003843291.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
 gi|302577515|gb|ADL51527.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
          Length = 1443

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 170/887 (19%), Positives = 316/887 (35%), Gaps = 164/887 (18%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             I+LL     G + L +LVS   L D   +  R+  S ++E   EG+I+ +   +G + +
Sbjct: 620  HIILLSKNQVGIKNLYKLVSFSSL-DNFHRKPRLPRSLIEEY-REGIIIGSACEAGELYK 677

Query: 158  AFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHEL 209
                  S    + ++ F      + +  +   +     +  +  RE   ++  L   +  
Sbjct: 678  NILQGQSDDELEPIINFYDYLEIQPICNNFFLIEKGNVKDENELREINRRIYNLGQKYNK 737

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT +  FL E D     +L+A    +           P  Y K   EM+  FS L E
Sbjct: 738  PVVATGDIHFLDERDGVFRKILLAGQGFSDAEN------QPPLYFKTTEEMLREFSYLGE 791

Query: 270  --ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
                E  ++     +  ++   PI       + +      E+E+R   +  +       +
Sbjct: 792  KACYEVVIKNPNDIAESVETVKPIPDETYPPKIEGA----EDEIREMTMKKVH------S 841

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
            I      +  ++RLD ELN I    ++  +LI    +  +  +   VG  RGS   S  A
Sbjct: 842  IYGDPLPEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSYSDGYLVG-SRGSVGSSFVA 900

Query: 388  YALTITDIDPLR-----------------------------------------FSLLFER 406
                IT+++ L                                            + FE 
Sbjct: 901  TMSGITEVNGLPPHYVCPNCKNSEFIMDGSVNCGADLPEKNCPKCGSEYIREGHDIPFET 960

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL  D    PD D++F  D + ++ +Y +  +G     +  T G++  K A   V + L 
Sbjct: 961  FLGFDGDKEPDIDLNFSGDNQGDIHKYTEELFGKGHTFKAGTIGTIAEKTAYGFVKKYLD 1020

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
                                            +E R++   V+RL   +Q   G+ R + 
Sbjct: 1021 E-------------------------------KEMRVSVAEVERL---TQGCTGVKRTSG 1046

Query: 527  THAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  GI++   D  +    P+     D  SD+  T F+   I    L+K D LG    T+
Sbjct: 1047 QHPGGIMVVPSDNEIYNFTPVQHPADDPNSDIITTHFDYHSI-SGRLLKLDILGHDDPTI 1105

Query: 582  LQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            L+   D        +D   +P +D     L T+   LG+ + E         G+     +
Sbjct: 1106 LRMLQDLTG-----IDPKTLPLNDAAVLSLFTSPDALGVNREELE-CEVGSYGLPEFGTK 1159

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             +  ++   +P    ++V  +   +G +  ++     I       +  I  ++ +M +  
Sbjct: 1160 FVRQMLVDTQPKTFSDLVRISGLSHGTDVWLNNAQYFIKEGYTTLRDCISTRDDIM-VYL 1218

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +  G    +A V+   + K      + +++          + +      +    K   Y 
Sbjct: 1219 IYQGLPEKDAFVIMEKVRKGKGLSPENEEQ----------MREHKVPEWYIESCKKIKYM 1268

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------- 800
            F K HA AY +++ + A+ K H+P  + A  +T+   + +                    
Sbjct: 1269 FPKGHAVAYCMMAVRIAYFKVHHPKAYYATYLTVRGTDFDGNLIIKGEGVIRQKIHELNS 1328

Query: 801  ------------KIKKFCQDARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGT 847
                         I + C +  +  IQ +   +     V F +  + +   + A+ GVG 
Sbjct: 1329 SNDISVKDKGLLTILEICYEMNKRGIQFLKIDLYKSDPVKFTIEGDNLRMPINALAGVGE 1388

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              A+ I EA     F S ED   R    K+++ V+E L   G L+  
Sbjct: 1389 NAAKSIAEARKGGEFLSKEDLRIRA---KVSKSVIEVLNEHGCLEGL 1432



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 36/85 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++  ++ + ++++ A     AIAITD   +    E        GI+ I 
Sbjct: 345 VELHAHTTMSAMDAVVAPSKLIERAAKWGHKAIAITDHGVVQGFPEAMDAGKKHGIKIIY 404

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTV 96
           G +  +       + N+G      +
Sbjct: 405 GVEGYLVDDGGSVVLNEGDRDIDDI 429


>gi|82750865|ref|YP_416606.1| DNA polymerase III PolC [Staphylococcus aureus RF122]
 gi|123549060|sp|Q2YXK4|DPO3_STAAB RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|82656396|emb|CAI80815.1| DNA polymerase III [Staphylococcus aureus RF122]
          Length = 1438

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 175/943 (18%), Positives = 325/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++NQ          + L+V   +G + L ++VS   L+    
Sbjct: 582  VQQMKELGVLNHNEINKKLSNQDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 641  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 700  DLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 760  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  + A       +         Q    RL+ EL  I    F+  +
Sbjct: 816  PRMEGAN----EEIRELSYANARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 924

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 985  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK-------------- 1030

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1031 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1065

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1119

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E                 +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1180 TDVWLG--------------NAQELIKTGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1224

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +  ++ K          E  I    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1225 IMESVRKGK-----GLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1275 AVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1334

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA  
Sbjct: 1335 LTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEARD 1394

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1395 DGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G +  +                     +V  V T  G   
Sbjct: 396 GMEGMLVDDGAPIAYKPQDVVLKDATYVVFDVET-TGLSN 434


>gi|289550944|ref|YP_003471848.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
            HKU09-01]
 gi|315658446|ref|ZP_07911318.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
 gi|289180476|gb|ADC87721.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
            HKU09-01]
 gi|315496775|gb|EFU85098.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
          Length = 1438

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 173/941 (18%), Positives = 335/941 (35%), Gaps = 181/941 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+              N K++N+          + L+V   EG + L ++
Sbjct: 579  IKMLQQMKELGVSNHKDI--------NKKLSNEDAYKRARPSHVTLIVQNQEGLKNLFKI 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 631  VS-ASLVKYYYRTPRIPRSLLDEF-REGLLIGTACDEGELFTAVMQRDQSEVEKVANYYD 688

Query: 176  -------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
                    L+ D L   L R          ++++      +P++AT N+ +L+E D  A 
Sbjct: 689  FIEVQPPALYQDLLDRELIRDTATLHEIYQRLLKAGEQANIPVIATGNAHYLNEHDGIAR 748

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQ 286
             +L+A      +++   P+     + +   EM+  F  L E  A E  V+     +  ++
Sbjct: 749  KILIASQPGNPLNRSTLPKA----HFRTTDEMLDEFHFLGEEKAYEIVVKNTNALADRIE 804

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               PI  +      +        E+R  + +  +    +         Q    RL+ EL 
Sbjct: 805  RVVPIKDQLFTPRMEGAN----EEIRELSYSNAKKLYGEDL------PQIVIDRLEKELA 854

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------ 400
             I    F+  +LI    ++ + ++   VG  RGS   S  A    IT+++PL        
Sbjct: 855  SIIGNGFAVIYLISQRLVKKSLEDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPQ 913

Query: 401  -----------------------------------SLLFERFLNPDRMSMPDFDIDFCQD 425
                                                + FE FL      +PD D++F  +
Sbjct: 914  CKTSEFFNDGSVGSGFDLPDKKCETCGSELIKEGQDIPFETFLGFKGDKVPDIDLNFSGE 973

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIP 480
             +     Y +  +G ++V +  T G++  K A   V      + +    +++DRL K   
Sbjct: 974  YQPNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK--- 1030

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                                                   G+ R    H  GI++      
Sbjct: 1031 ------------------------------------GCTGVKRTTGQHPGGIIVVPDYMD 1054

Query: 539  LSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+     D  S    T F+   I    ++K D LG    T+++   D        
Sbjct: 1055 IYDFTPIQYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SG 1108

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D   IP DD ET  + ++  TLG+ + +    +    G+       +  ++   +P   
Sbjct: 1109 IDPKTIPVDDKETMKIFSSPETLGVTEEDIL-CKTGTFGVPEFGTGFVRQMLEDTKPTTF 1167

Query: 656  DNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
              +V  +   +G +  + +   L+   + +  GVI  ++ +M +  + +G   S A  + 
Sbjct: 1168 SELVQISGLSHGTDVWLGNAQELVRSGICDLSGVIGCRDDIM-VYLMYAGLEPSMAFKIM 1226

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
             ++ K          +  I    +N +      +  ++      Y F K+HAAAY +++ 
Sbjct: 1227 ESVRKGK-----GLTDEMIETMKENNVPDWYLDSCLKI-----KYMFPKAHAAAYVLMAV 1276

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------------------------------K 801
            + A+ K H+P+ + AA  T+   + +                                  
Sbjct: 1277 RIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKESIKNTVKDMYARYMELGKKEKDVLT 1336

Query: 802  IKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
            + +   +       + P S+      DF +  + +     A+ G+G   A+ I+EA ++ 
Sbjct: 1337 VLELVNEMAHRGFSMQPISLEKSQAFDFIIEGDSLIPPFIAVPGLGENVAQRIVEARSEG 1396

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            PF S ED   +     L++++++ L   G+L      + QL
Sbjct: 1397 PFLSKEDLNKKA---GLSQKIIDYLDDLGSLPDL-PDKAQL 1433



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++N+ + + A     AIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNINSYVAQAAEWGHKAIAVTDHNGVQAFPDAHSAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G +  +                     +V  V T  G   
Sbjct: 396 GMEGMLVDDGVPIAYKPTNRDLKDATYVVFDVET-TGLSN 434


>gi|319892281|ref|YP_004149156.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
            HKU10-03]
 gi|317161977|gb|ADV05520.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
            HKU10-03]
          Length = 1435

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/937 (18%), Positives = 328/937 (35%), Gaps = 206/937 (21%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
                  N K++N+          + L+V    G + L ++VS   L+    ++ RI  S 
Sbjct: 589  HNHQDINKKLSNEDAYKRARPQHVTLIVQNQTGLKNLFKIVS-ASLVQYYYRTPRIPRSL 647

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQR 188
            L E   EGL++ T    G +  A         E+    +         L+ D L  +L R
Sbjct: 648  LDE-HREGLLIGTACDEGEVFTAVMQRDQSEVERIAKYYDYIEVQPPALYQDLLDRDLIR 706

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                      +++++  T+++P++AT N+ +L E D  A  +L+A      ++       
Sbjct: 707  DNETLVEIYERILKVGETNQIPVIATGNAHYLHEHDAIARRILIAAQPGNPLN----RST 762

Query: 249  TPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             P+ + +   EM+  F  L E       +ENT  +A R   ++ +   +    +E   ++
Sbjct: 763  LPEAHFRTTDEMLDAFHFLGEERAHQIVVENTRALAERIEKVVPIKDKLYTPNMEGANEE 822

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            I+  E +    K + G E+             Q    RL+ EL  I    F+  +LI   
Sbjct: 823  IR--EMSYRHAKQLYGEEL------------PQIVIDRLEKELESIIGNGFAVIYLISQR 868

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF---------------------- 400
             ++ + ++   VG  RGS   S  A    IT+++PL                        
Sbjct: 869  LVKKSLEDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPSCKKSEFFDDGSVGSGF 927

Query: 401  ------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                               + FE FL      +PD D++F  + + +   Y +  +G E 
Sbjct: 928  DLPDKTCECGTEMIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPKAHNYTKVLFGEEY 987

Query: 443  VAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            V +  T G++  K A   V      + +    ++VDRL K                    
Sbjct: 988  VYRAGTIGTVAEKTAFGFVKGYLNDQGIHKRGAEVDRLVK-------------------- 1027

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRSD--- 552
                                  G+ R    H  GI++      +    P+          
Sbjct: 1028 -------------------GCTGVKRTTGQHPGGIIVVPDYMDIFDFTPIQYPADDQSSS 1068

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY--- 609
               T F+   I    ++K D LG    T+++   D        +D   IP DD +T    
Sbjct: 1069 WMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDQQTMRIF 1122

Query: 610  -----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
                        +L   GT G+ +  +  +RQ LE  +P    +++ +  L     +   
Sbjct: 1123 SSPEALGVTEEEILAKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGTDVWLG 1182

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
                          +   LI          I  ++ +M +  + +G   S A  +  A+ 
Sbjct: 1183 --------------NAQELIRSGTCTLSSCIGCRDDIM-VYLMYAGLEPSLAFKIMEAVR 1227

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K          E F     +  + +    + +    K   Y F K+HAAAY +++ + A+
Sbjct: 1228 KGK-----GLTEEF-----EQVMKENNVPDWYMDSCKKIKYMFPKAHAAAYVLMAVRIAY 1277

Query: 779  MKTHYPVEFLAASMTLEMDNVE---------------------------------KIKKF 805
             K H+P+ + A+  T+   + +                                  + + 
Sbjct: 1278 FKVHHPLYYYASYFTVRASDFDLITMVKDKDSIRQTVKDMYARYMDLGKKEKDVLTVLEI 1337

Query: 806  CQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
              +      ++ P ++      +F +  + +     A+ G+G   A+ I+EA  + PF S
Sbjct: 1338 MNEMAHRGYRMQPVNLEKSQAYEFIIEGDTLIPPFVAVPGLGENVAKRIVEAREEGPFLS 1397

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             ED   +     ++++++E L   G+L      + QL
Sbjct: 1398 KEDLNKKA---GVSQKIIEYLDSLGSLPNM-PDKAQL 1430



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G   + + + + A     AIA+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTSMSQMDGVTHIGDYVAQAAQWGHDAIAVTDHNVVQAYPDAHAAAEKHGIKMIY 393

Query: 72  GCQLD 76
           G +  
Sbjct: 394 GMEGM 398


>gi|320140919|gb|EFW32766.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus MRSA131]
          Length = 1436

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 325/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 580  VQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 638

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 639  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQ 697

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 698  DLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 757

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 758  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 813

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  + A       +         Q    RL+ EL  I    F+  +
Sbjct: 814  PRMEGAN----EEIRELSYANARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 863

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 864  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 922

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 923  VGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 982

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 983  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK-------------- 1028

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1029 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1063

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1064 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1117

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E                 +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1118 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1177

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1178 TDVWLG--------------NAQELIKTGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1222

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +  ++ K          E  I    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1223 IMESVRKGK-----GLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVLM 1272

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1273 AVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1332

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA  
Sbjct: 1333 LTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEARD 1392

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1393 DGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1431



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 393

Query: 72  GCQLD 76
           G +  
Sbjct: 394 GMEGM 398


>gi|311068180|ref|YP_003973103.1| DNA polymerase III PolC [Bacillus atrophaeus 1942]
 gi|310868697|gb|ADP32172.1| DNA polymerase III PolC [Bacillus atrophaeus 1942]
          Length = 1437

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 172/930 (18%), Positives = 323/930 (34%), Gaps = 169/930 (18%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             L+  + A    IQ          + +N+  +N  +   P      LL     G + L +
Sbjct: 578  LLKMLKDAAEKDIQ------YHDQLNENMGQSNAYQRSRP--YHATLLAVNDTGLKNLFK 629

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 630  LVSMSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 687

Query: 175  K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                    +++   L + L R     +   + + +L    + P+VAT N  +L++ED   
Sbjct: 688  DYLEVQPPEVYRHLLQLELVRDEKALKEIITNITKLGEKLDKPVVATGNVHYLNDEDKIY 747

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFIL 285
              +L++       +        P  + +   EM+  FS L   +A E  V   ++ + ++
Sbjct: 748  RKILISSQGG---ANPLNRHELPKVHFRTTDEMLEAFSFLGAEKAKEIVVANTQKVASMI 804

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            +   PI       + +   +E  +    +A +     L           +    R++ EL
Sbjct: 805  EEIKPIKDDLYTPKIEGADQEIRDMSYQRARSIYGEEL----------PEIVEARIEKEL 854

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------- 398
              I    F+  +LI    ++ +  +   VG  RGS   S+ A    IT+++PL       
Sbjct: 855  KSIIGHGFAVIYLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLAPHYVCP 913

Query: 399  ----------------------------------RFSLLFERFLNPDRMSMPDFDIDFCQ 424
                                                 + FE FL      +PD D++F  
Sbjct: 914  ECRHSEFFNDGSVGSGFDLPDKMCPNCNTPLKKDGHDIPFETFLGFKGDKVPDIDLNFSG 973

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + +     Y +  +G + V +  T G++  K A   V                       
Sbjct: 974  EYQPHAHNYTKVLFGEDNVYRAGTIGTVAEKTAYGYVKGYAGDH---------------- 1017

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQL 542
                              +    +DRL+   Q   G+ R    H  GI++      +   
Sbjct: 1018 ---------------NLHMRGAEIDRLV---QGCTGVKRTTGQHPGGIIVVPDYMDIYDF 1059

Query: 543  VPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             P+        S+   T F+   I    L+K D LG    T+++   D        +D  
Sbjct: 1060 SPIQFPADATGSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPK 1113

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD E   +     +LG+ + E  G +    G+       +  ++   +P     +V
Sbjct: 1114 TIPTDDPEVMKIFQGTESLGVTE-EQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELV 1172

Query: 660  VYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   +G +  + +   LI   + E   VI  ++ +M +  +  G   S A  +   + 
Sbjct: 1173 QISGLSHGTDVWLGNAQELIHNNICELSEVIGCRDDIM-VYLIYQGLEPSLAFKIMEFVR 1231

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K      + ++E          +      + +    K   Y F K+HAAAY +++ + A+
Sbjct: 1232 KGKGLTPEWEEE----------MKNNKVPDWYIDSCKKIKYMFPKAHAAAYVLMAVRIAY 1281

Query: 779  MKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVN------- 822
             K H+ + + AA  T+  D+ +          IK    D     +   P   N       
Sbjct: 1282 FKVHHALLYYAAYFTVRADDFDIDTMIKGSTAIKAVMDDINSKGLDASPKEKNLLTVLEL 1341

Query: 823  ------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
                              +   +F +  N +     +I G+GT  A +I++A  +  F S
Sbjct: 1342 AREMCERGYSFQKVDLYRSSASEFIIDGNSLIPPFNSIPGLGTNAALNIVKARGEGEFLS 1401

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             ED   R    K+++ +LE L   G L+  
Sbjct: 1402 KEDLQKR---GKVSKTILEYLDRHGCLEAL 1428



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++    +  ++++       AIA+TD   + S  +    A   GI+ I 
Sbjct: 335 VELHLHSPMSQMDAVTGVGKLVEQAKKWGHEAIALTDHAVVQSFPDAYAAAKKNGIKMIY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N           IV  V T
Sbjct: 395 GMEANIVDDGVPIAYNPAHRLLEEDTYIVFDVET 428


>gi|229168557|ref|ZP_04296280.1| DNA polymerase III polC-type [Bacillus cereus AH621]
 gi|228614963|gb|EEK72065.1| DNA polymerase III polC-type [Bacillus cereus AH621]
          Length = 1433

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 176/936 (18%), Positives = 322/936 (34%), Gaps = 197/936 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAIYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +  +EM+  FS L E  A E  V    + + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTNEMLDCFSFLGEDKAKEIVVTNTNKIASLIGDVRPVKDDLYT 812

Query: 298  K--ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
               E  D +  + + +  +++ G E+             +    RL+ EL  I    F+ 
Sbjct: 813  PKIEGADDETRDMSYVMARSIYGDEL------------PEIVEARLEKELKSIIGHGFAV 860

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------- 399
             +LI    ++ +  +   VG  RGS   S  A  + IT+++PL                 
Sbjct: 861  IYLISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFND 919

Query: 400  -------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                       + FE FL      +PD D++F  + +     Y 
Sbjct: 920  GSVGSGFDLPDKECPTCNVPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYT 979

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            +  +G + V +  T G++  K A   V               K   ND    +       
Sbjct: 980  KLLFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI------- 1017

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS- 551
                      +  +DRL+       G+ R    H  GI++      +    P+     S 
Sbjct: 1018 ---------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSI 1065

Query: 552  --DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
              +   T F+   I    L+K D LG    T+++   D        +D   IP DD E  
Sbjct: 1066 GAEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVM 1119

Query: 610  HLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             +                  GTLGI +  +  +RQ LE  +P    +++ +  L     +
Sbjct: 1120 KIFSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDV 1179

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADV 712
                             + + LI         VI  ++ +M       L    +    + 
Sbjct: 1180 WLG--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMES 1225

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +R+   K + EE +++            +        +    K   Y F K+HAAAY ++
Sbjct: 1226 VRKG--KGVPEEWEEE------------MRNNNVPGWYIDSCKKIKYMFPKAHAAAYVLM 1271

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS--- 820
            + + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P     
Sbjct: 1272 AVRIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSL 1331

Query: 821  ----------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                                    +   +F +  + +     A+ G+GT  A  I+EA  
Sbjct: 1332 LTVLEMTLEMCERGYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAAFSIVEARK 1391

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +  F S ED   R    K+++ ++E L   G L   
Sbjct: 1392 NGDFLSKEDLQQR---SKVSKTIIEYLDGQGCLGDL 1424



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ +       AIA+TD     S  E       AG++ + 
Sbjct: 332 VELHLHTPMSQMDAVTSVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVLY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|242373555|ref|ZP_04819129.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
 gi|242348918|gb|EES40520.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
          Length = 1442

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 173/943 (18%), Positives = 328/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    ++   + N K+TN+          + L+V   EG + L ++VS   L+    
Sbjct: 586  VQQMKELGVNNHNEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVS-ASLVQYYY 644

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EG+++ T    G +  A         EK    +         L+ 
Sbjct: 645  RTPRIPRSLLNEY-REGILVGTACDEGELFTAVMQKDQSEVEKIAKYYDFIEVQPPALYQ 703

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R +        ++++   +  +P++AT N+ +L E D  A  +L+A      
Sbjct: 704  DLMDRELIRDKETLIEIYKRLIEAGESANIPVIATGNAHYLYEHDAIARKILIASQPGNP 763

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM+  F  L E  A E  V+     +  ++   PI  +   
Sbjct: 764  LN----RSTLPEAHFRTTDEMLDEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDKLFT 819

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +       +E+R  + +  +    +         Q    RL+ EL  I    FS  +
Sbjct: 820  PRMEGAN----DEIRELSYSNAKKLYGEDL------PQIVIDRLEKELASIIGNGFSVIY 869

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 870  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFDDGS 928

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 929  VGSGFDLPDKKCPTCGNDLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 988

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 989  LFGEDKVFRAGTIGTVAEKTAFGFVKGYLNDQGIHKRGAEIDRLVK-------------- 1034

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1035 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQFPA 1069

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  +    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1070 DDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1123

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            +T                +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1124 DTMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1183

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1184 TDVWLG--------------NAQELIRQGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1228

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
                + K          +  +     N +      +  ++      Y F K+HAAAY ++
Sbjct: 1229 TMEFVRKGR-----GLTDEMVEAMKANDVPDWYLDSCRKI-----KYMFPKAHAAAYVLM 1278

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + AA  T+   + +                                
Sbjct: 1279 AVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1338

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      DF +  + +     A+ G+G   A+ I+EA  
Sbjct: 1339 LTVLEIMNEMAHRGYRMQPISLEKSQAFDFIIEGDTLIPPFVAVPGLGENVAKRIVEARE 1398

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            + PF S ED   +     L+++V++ L   G+L      + QL
Sbjct: 1399 EGPFLSKEDLNKKA---GLSQKVIDYLDEMGSLPDL-PDKAQL 1437



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++++ +++ A     AIA+TD N + +  +    A   G++ I 
Sbjct: 340 VEFHLHTAMSQMDGIPNISSYVEQAAEWGHSAIAVTDHNVVQAFPDAHNAAEKHGLKMIY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G +  +                     +V  V T  G   
Sbjct: 400 GMEGMLVDDGVPIAYKPTDRNLKDATYVVFDVET-TGLSN 438


>gi|307690728|ref|ZP_07633174.1| DNA polymerase III PolC [Clostridium cellulovorans 743B]
          Length = 1439

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 170/887 (19%), Positives = 316/887 (35%), Gaps = 164/887 (18%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             I+LL     G + L +LVS   L D   +  R+  S ++E   EG+I+ +   +G + +
Sbjct: 616  HIILLSKNQVGIKNLYKLVSFSSL-DNFHRKPRLPRSLIEEY-REGIIIGSACEAGELYK 673

Query: 158  AFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHEL 209
                  S    + ++ F      + +  +   +     +  +  RE   ++  L   +  
Sbjct: 674  NILQGQSDDELEPIINFYDYLEIQPICNNFFLIEKGNVKDENELREINRRIYNLGQKYNK 733

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT +  FL E D     +L+A    +           P  Y K   EM+  FS L E
Sbjct: 734  PVVATGDIHFLDERDGVFRKILLAGQGFSDAEN------QPPLYFKTTEEMLREFSYLGE 787

Query: 270  --ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
                E  ++     +  ++   PI       + +      E+E+R   +  +       +
Sbjct: 788  KACYEVVIKNPNDIAESVETVKPIPDETYPPKIEGA----EDEIREMTMKKVH------S 837

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
            I      +  ++RLD ELN I    ++  +LI    +  +  +   VG  RGS   S  A
Sbjct: 838  IYGDPLPEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSYSDGYLVG-SRGSVGSSFVA 896

Query: 388  YALTITDIDPLR-----------------------------------------FSLLFER 406
                IT+++ L                                            + FE 
Sbjct: 897  TMSGITEVNGLPPHYVCPNCKNSEFIMDGSVNCGADLPEKNCPKCGSEYIREGHDIPFET 956

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL  D    PD D++F  D + ++ +Y +  +G     +  T G++  K A   V + L 
Sbjct: 957  FLGFDGDKEPDIDLNFSGDNQGDIHKYTEELFGKGHTFKAGTIGTIAEKTAYGFVKKYLD 1016

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
                                            +E R++   V+RL   +Q   G+ R + 
Sbjct: 1017 E-------------------------------KEMRVSVAEVERL---TQGCTGVKRTSG 1042

Query: 527  THAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  GI++   D  +    P+     D  SD+  T F+   I    L+K D LG    T+
Sbjct: 1043 QHPGGIMVVPSDNEIYNFTPVQHPADDPNSDIITTHFDYHSI-SGRLLKLDILGHDDPTI 1101

Query: 582  LQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            L+   D        +D   +P +D     L T+   LG+ + E         G+     +
Sbjct: 1102 LRMLQDLTG-----IDPKTLPLNDAAVLSLFTSPDALGVNREELE-CEVGSYGLPEFGTK 1155

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             +  ++   +P    ++V  +   +G +  ++     I       +  I  ++ +M +  
Sbjct: 1156 FVRQMLVDTQPKTFSDLVRISGLSHGTDVWLNNAQYFIKEGYTTLRDCISTRDDIM-VYL 1214

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +  G    +A V+   + K      + +++          + +      +    K   Y 
Sbjct: 1215 IYQGLPEKDAFVIMEKVRKGKGLSPENEEQ----------MREHKVPEWYIESCKKIKYM 1264

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------- 800
            F K HA AY +++ + A+ K H+P  + A  +T+   + +                    
Sbjct: 1265 FPKGHAVAYCMMAVRIAYFKVHHPKAYYATYLTVRGTDFDGNLIIKGEGVIRQKIHELNS 1324

Query: 801  ------------KIKKFCQDARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGT 847
                         I + C +  +  IQ +   +     V F +  + +   + A+ GVG 
Sbjct: 1325 SNDISVKDKGLLTILEICYEMNKRGIQFLKIDLYKSDPVKFTIEGDNLRMPINALAGVGE 1384

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              A+ I EA     F S ED   R    K+++ V+E L   G L+  
Sbjct: 1385 NAAKSIAEARKGGEFLSKEDLRIRA---KVSKSVIEVLNEHGCLEGL 1428



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 36/85 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++  ++ + ++++ A     AIAITD   +    E        GI+ I 
Sbjct: 341 VELHAHTTMSAMDAVVAPSKLIERAAKWGHKAIAITDHGVVQGFPEAMDAGKKHGIKIIY 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTV 96
           G +  +       + N+G      +
Sbjct: 401 GVEGYLVDDGGSVVLNEGDRDIDDI 425


>gi|57651834|ref|YP_186140.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus COL]
 gi|87161645|ref|YP_493854.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
            USA300_FPR3757]
 gi|88194974|ref|YP_499774.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus NCTC
            8325]
 gi|161509430|ref|YP_001575089.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
            USA300_TCH1516]
 gi|294848260|ref|ZP_06789007.1| DNA polymerase III [Staphylococcus aureus A9754]
 gi|56749834|sp|P68852|DPO3_STAAW RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|110808208|sp|Q2G1Z8|DPO3_STAA8 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|123486180|sp|Q2FHH4|DPO3_STAA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|12082347|dbj|BAB20885.1| PolC [Staphylococcus aureus]
 gi|57286020|gb|AAW38114.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus COL]
 gi|87127619|gb|ABD22133.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus USA300_FPR3757]
 gi|87202532|gb|ABD30342.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus NCTC 8325]
 gi|160368239|gb|ABX29210.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus USA300_TCH1516]
 gi|294825060|gb|EFG41482.1| DNA polymerase III [Staphylococcus aureus A9754]
          Length = 1436

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 325/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 580  VQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 638

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 639  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQ 697

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 698  DLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 757

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 758  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 813

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  + A       +         Q    RL+ EL  I    F+  +
Sbjct: 814  PRMEGAN----EEIRELSYANARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 863

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 864  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 922

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 923  VGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 982

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 983  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK-------------- 1028

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1029 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1063

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1064 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1117

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E                 +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1118 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1177

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1178 TDVWLG--------------NAQELIKTGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1222

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +  ++ K          E  I    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1223 IMESVRKGK-----GLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVLM 1272

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1273 AVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1332

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA  
Sbjct: 1333 LTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEARD 1392

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1393 DGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1431



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 393

Query: 72  GCQLD 76
           G +  
Sbjct: 394 GMEGM 398


>gi|329733603|gb|EGG69931.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus 21193]
          Length = 1438

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 324/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 582  VQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 641  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 700  DLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 760  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  + A       +         Q    RL+ EL  I    F+  +
Sbjct: 816  PRMEGAN----EEIRELSYANARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 924

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      +      +++DRL K              
Sbjct: 985  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGTHKRGAEIDRLVK-------------- 1030

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1031 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1065

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1119

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E                 +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1180 TDVWLG--------------NAQELIKTGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1224

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +  ++ K          E  I    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1225 IMESVRKGK-----GLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1275 AVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1334

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA  
Sbjct: 1335 LTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEARD 1394

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1395 DGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLD 76
           G +  
Sbjct: 396 GMEGM 400


>gi|253731883|ref|ZP_04866048.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
            USA300_TCH959]
 gi|253724293|gb|EES93022.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
            USA300_TCH959]
 gi|320144365|gb|EFW36131.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus MRSA177]
          Length = 1442

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 325/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 586  VQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 644

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 645  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQ 703

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 704  DLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 763

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 764  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 819

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  + A       +         Q    RL+ EL  I    F+  +
Sbjct: 820  PRMEGAN----EEIRELSYANARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 869

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 870  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 928

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 929  VGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 988

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 989  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK-------------- 1034

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1035 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1069

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1070 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1123

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E                 +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1124 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1183

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1184 TDVWLG--------------NAQELIKTGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1228

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +  ++ K          E  I    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1229 IMESVRKGK-----GLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVLM 1278

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1279 AVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1338

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA  
Sbjct: 1339 LTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEARD 1398

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1399 DGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1437



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 340 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 399

Query: 72  GCQLD 76
           G +  
Sbjct: 400 GMEGM 404


>gi|282916524|ref|ZP_06324282.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus D139]
 gi|283770328|ref|ZP_06343220.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            H19]
 gi|282319011|gb|EFB49363.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus D139]
 gi|283460475|gb|EFC07565.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            H19]
          Length = 1438

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 176/946 (18%), Positives = 327/946 (34%), Gaps = 205/946 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 582  VQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 641  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 700  DLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 760  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  + A       +         Q    RL+ EL  I    F+  +
Sbjct: 816  PRMEGAN----EEIRELSYANARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 924

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 985  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK-------------- 1030

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1031 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1065

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1119

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E                 +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSE 709
              +                 +   LI   + +   VI  ++ +M     A L +  +   
Sbjct: 1180 TDVWLG--------------NAQELIKTGICDLSSVIGCRDDIMVYLMYAGLEASMAFKI 1225

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             + +R+   K + EEM       I    +N +      +  ++      Y F K+HAAAY
Sbjct: 1226 MESVRKG--KGLTEEM-------IETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAY 1271

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------------------------- 800
             +++ + A+ K H+P+ + A+  T+   + +                             
Sbjct: 1272 VLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKE 1331

Query: 801  ----KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                 + +   +      ++ P S+      +F +  + +     ++ G+G   A+ I+E
Sbjct: 1332 KDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVE 1391

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            A  D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1392 ARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLD 76
           G +  
Sbjct: 396 GMEGM 400


>gi|269940755|emb|CBI49137.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
            TW20]
          Length = 1438

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 325/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 582  VQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 641  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 700  DLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 760  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  + A       +         Q    RL+ EL  I    F+  +
Sbjct: 816  PRMEGAN----EEIRELSYANARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 924

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 985  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK-------------- 1030

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1031 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1065

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1119

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E                 +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1180 TDVWLG--------------NAQELIKTGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1224

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +  ++ K          E  I    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1225 IMESVRKGK-----GLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1275 AVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1334

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA  
Sbjct: 1335 LTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEARD 1394

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1395 DGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLD 76
           G +  
Sbjct: 396 GMEGM 400


>gi|323464622|gb|ADX76775.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            pseudintermedius ED99]
          Length = 1435

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/937 (18%), Positives = 328/937 (35%), Gaps = 206/937 (21%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
                  N K++N+          + L+V    G + L ++VS   L+    ++ RI  S 
Sbjct: 589  HNHQDINKKLSNEDAYKRARPQHVTLIVQNQTGLKNLFKIVS-ASLVQYYYRTPRIPRSL 647

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQR 188
            L E   EGL++ T    G +  A         E+    +         L+ D L  +L R
Sbjct: 648  LDE-HREGLLVGTACDEGEVFTAVMQRDQSEVERIAKYYDYIEVQPPALYQDLLDRDLIR 706

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                      +++++  T+++P++AT N+ +L E D  A  +L+A      ++       
Sbjct: 707  DNETLVEIYERILKVGETNQIPVIATGNAHYLHEHDAIARRILIASQPGNPLN----RST 762

Query: 249  TPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             P+ + +   EM+  F  L E       +ENT  +A R   ++ +   +    +E   ++
Sbjct: 763  LPEAHFRTTDEMLDAFHFLGEERAHQIVVENTRALAERIEKVVPIKDKLYTPNMEGANEE 822

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            I+  E +    K + G E+             Q    RL+ EL  I    F+  +LI   
Sbjct: 823  IR--EMSYRHAKQLYGEEL------------PQIVIDRLEKELESIIGNGFAVIYLISQR 868

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF---------------------- 400
             ++ + ++   VG  RGS   S  A    IT+++PL                        
Sbjct: 869  LVKKSLEDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPSCKKSEFFDDGSVGSGF 927

Query: 401  ------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                               + FE FL      +PD D++F  + + +   Y +  +G E 
Sbjct: 928  DLPDKTCECGTEMIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPKAHNYTKVLFGEEY 987

Query: 443  VAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            V +  T G++  K A   V      + +    ++VDRL K                    
Sbjct: 988  VYRAGTIGTVAEKTAFGFVKGYLNDQGIHKRGAEVDRLVK-------------------- 1027

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRSD--- 552
                                  G+ R    H  GI++      +    P+          
Sbjct: 1028 -------------------GCTGVKRTTGQHPGGIIVVPDYMDIFDFTPIQYPADDQSSS 1068

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY--- 609
               T F+   I    ++K D LG    T+++   D        +D   IP DD +T    
Sbjct: 1069 WMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDQQTMRIF 1122

Query: 610  -----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
                        +L   GT G+ +  +  +RQ LE  +P    +++ +  L     +   
Sbjct: 1123 SSPEALGVTEEEILAKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGTDVWLG 1182

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
                          +   LI          I  ++ +M +  + +G   S A  +  A+ 
Sbjct: 1183 --------------NAQELIRSGTCTLSSCIGCRDDIM-VYLMYAGLEPSLAFKIMEAVR 1227

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K          E F     +  + +    + +    K   Y F K+HAAAY +++ + A+
Sbjct: 1228 KGK-----GLTEEF-----EQVMKENNVPDWYMDSCKKIKYMFPKAHAAAYVLMAVRIAY 1277

Query: 779  MKTHYPVEFLAASMTLEMDNVE---------------------------------KIKKF 805
             K H+P+ + A+  T+   + +                                  + + 
Sbjct: 1278 FKVHHPLYYYASYFTVRASDFDLITMVKDKDSIRQTVKDMYARYMDLGKKEKDVLTVLEI 1337

Query: 806  CQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
              +      ++ P ++      +F +  + +     A+ G+G   A+ I+EA  + PF S
Sbjct: 1338 MNEMAHRGYRMQPVNLEKSQAYEFIIEGDTLIPPFVAVPGLGENVAKRIVEAREEGPFLS 1397

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             ED   +     ++++++E L   G+L      + QL
Sbjct: 1398 KEDLNKKA---GVSQKIIEYLDSLGSLPNM-PDKAQL 1430



 Score = 80.8 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G   + + + + A     AIA+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTSMSQMDGVTHIGDYVAQAAQWGHDAIAVTDHNVVQAYPDAHAAAEKHGIKMIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G +  +                     +V  V T  G   
Sbjct: 394 GMEGMLVDDGVPIAYKPSDIMLQDATYVVFDVET-TGLSN 432


>gi|295427751|ref|ZP_06820383.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128109|gb|EFG57743.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 1436

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 324/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 580  VQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 638

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 639  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQ 697

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 698  DLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 757

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 758  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 813

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  + A       +         Q    RL+ EL  I    F+  +
Sbjct: 814  PRMEGAN----EEIRELSYANARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 863

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 864  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 922

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 923  VGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 982

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 983  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK-------------- 1028

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1029 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1063

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1064 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1117

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E                 +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1118 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1177

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1178 TDVWLG--------------NAQELIKTGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1222

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +  ++ K          E  I    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1223 IMESVRKGK-----GLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVLM 1272

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1273 AVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1332

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      +F +    +     ++ G+G   A+ I+EA  
Sbjct: 1333 LTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGETLIPPFISVPGLGENVAKRIVEARD 1392

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1393 DGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1431



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 393

Query: 72  GCQLD 76
           G +  
Sbjct: 394 GMEGM 398


>gi|323443912|gb|EGB01523.1| DNA polymerase III PolC [Staphylococcus aureus O46]
          Length = 1436

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 325/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 580  VQQMQELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 638

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 639  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQ 697

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 698  DLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 757

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 758  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 813

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  + A       +         Q    RL+ EL  I    F+  +
Sbjct: 814  PRMEGAN----EEIRELSYANARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 863

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 864  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 922

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 923  VGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 982

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 983  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK-------------- 1028

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1029 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1063

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1064 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1117

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E                 +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1118 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1177

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1178 TDVWLG--------------NAQELIKTGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1222

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +  ++ K          E  I    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1223 IMESVRKGK-----GLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVLM 1272

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1273 AVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKEMYSRYMDLGKKEKDV 1332

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA  
Sbjct: 1333 LTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEARD 1392

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1393 DGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1431



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 393

Query: 72  GCQLD 76
           G +  
Sbjct: 394 GMEGM 398


>gi|302668958|ref|YP_003832783.1| DNA polymerase III E DnaE2 [Butyrivibrio proteoclasticus B316]
 gi|302397298|gb|ADL36201.1| DNA polymerase III E DnaE2 [Butyrivibrio proteoclasticus B316]
          Length = 972

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 243/885 (27%), Positives = 389/885 (43%), Gaps = 163/885 (18%)

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              PI    + ++      + +  L    + G   R       K    ++  +R+ +EL V
Sbjct: 2    REPIANIVLPEDVLKNLTKADKLLIKNTIKGTNERYKDFPEEK-LSNEELLRRVSYELEV 60

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIP---------------------------------- 373
            I  M FS YFL+VADF+Q  +K                                      
Sbjct: 61   IITMGFSDYFLVVADFLQVGQKIGHMPLDRIEHLRAHMTEMSIEEMISYIEEDMSYPGFT 120

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR-----RD 428
            +G GRGSGAGSV AY   IT+++P ++ LLFERFLNP+R+SMPDFD D  +       RD
Sbjct: 121  IGIGRGSGAGSVVAYVNYITNVEPTQYDLLFERFLNPERVSMPDFDSDLSKAEAPYGVRD 180

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAAL---------RDVGRALQMPYS--------- 470
             VI YV  KYG++ V  I T  +L  KAA+         R+  +                
Sbjct: 181  IVIEYVGKKYGYDGVCGICTPSTLAPKAAVMNTANILVDREFQKKKGFKEGDYIPNSEKD 240

Query: 471  ----QVDR----LCKLI----PNDPAHPVSLQAIADDSRFREA----RLADPSVDRLLEI 514
                ++++    L K I    P DP    S + + D S   E+             ++E+
Sbjct: 241  PVWVEINKHYTDLSKAIRADIPEDPGTTFSSE-MEDGSTLYESLKMKYAGSKDATEIIEL 299

Query: 515  SQKLEGLYRHASTHAAGIVIGDR-PLSQLVPMYRDVRSDLPVTQFNMKWIEK-AGLIKFD 572
            +  L+G+  +   HAAG++I D   + +   +  D  S+    Q N    E  AGL+K D
Sbjct: 300  ANMLDGVNDNYGKHAAGVIIADNGNVGEYGALMYDDESNGWKIQMNAVECEDTAGLLKMD 359

Query: 573  FLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQ 630
            FLGLKTL ++  +L  +   RG+ +++  +P DD E Y  +  T  T+ +FQ  S+GM+Q
Sbjct: 360  FLGLKTLNIITMALRLIYENRGIYINVENLP-DDPEVYSKIFATGNTVEVFQFSSNGMKQ 418

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH---PLIDPMLKETQG 687
             L+  +PD  +D+  L + +RPGP+  I    ++K+G+    S     P I  +L  T G
Sbjct: 419  MLKKFKPDKFDDLTLLNATFRPGPMKYIDPIADKKHGRPVETSAFDKVPQIQELLAPTYG 478

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA----------- 736
              +YQEQVM+I Q++  YS+  AD +RRAM KK +  + + +E F+ G            
Sbjct: 479  YPVYQEQVMRIFQIMGQYSIGGADEIRRAMSKKKQYIIAENREIFVHGGEMENHRTHKSI 538

Query: 737  -----SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
                  + GI++  A  +F+ L+ FA YGFNKSH+ AYA  +Y TAW+K HYP+EF  A 
Sbjct: 539  HVGGAMELGIAEDTAYEVFDALSDFAKYGFNKSHSLAYAKTAYMTAWLKLHYPIEFYTAC 598

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            + +E +  +++     DA+   ++I P  +NT    F     +IY+  A +         
Sbjct: 599  LCIEEN--KEMAAILADAKANGVKIAPVDINTSRAGFTCDTEQIYFGFAGV--------- 647

Query: 852  HIMEASAD--KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
             + +A+ +    + S+ DF  R   K      LE LV  GA D F  SR  LL+ L    
Sbjct: 648  SMEKATQNLTHDYVSVADFILRGGIKGSK---LEGLVKVGAFDNFTTSRKALLEVLPVYA 704

Query: 910  KYAQWVEKNRTN--KHENIFAHEKGTFSDKITLEKFSVENSS------------------ 949
            ++ + ++K + N  K+ NI A  +     K  L+K+  ++                    
Sbjct: 705  EHMEAIKKAQANVTKYTNILADMEADPEGKTLLKKYDRKSWPKKEEAQTRLENAKESLDF 764

Query: 950  --------------------VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
                                 R + E+ + G Y +GHP+D+Y    +  G      S   
Sbjct: 765  HTKAIKAQVIPMQQFKDTMYERLQAEKDLCGLYLTGHPVDMYGTP-KDNGCMEIINSTGN 823

Query: 990  IRGNNIRLAAMVVSKQQKKTR--KGSRIGWVTFSEPAKEYEANFF 1032
                   +   + + +   T+     ++ +    +   +     F
Sbjct: 824  CH-----IMGQISNLRICSTKADASKKLAFFDIEDQTDKIHVCCF 863


>gi|313892597|ref|ZP_07826184.1| DNA polymerase III, alpha subunit, Gram-positive type [Dialister
            microaerophilus UPII 345-E]
 gi|313118994|gb|EFR42199.1| DNA polymerase III, alpha subunit, Gram-positive type [Dialister
            microaerophilus UPII 345-E]
          Length = 1207

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 170/991 (17%), Positives = 341/991 (34%), Gaps = 193/991 (19%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S L+G +    I+        PA+AITD   + +  +  + A     + I 
Sbjct: 276  VELHLHTKMS-LDGLIDNEEIIKTAKEWNHPAVAITDHGVIQAFPKIQEIAAKYKQKVIY 334

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +       +             I++L     G + L  LV+  +L    ++   +
Sbjct: 335  GMEGYMIEN----IPEDVDADRQKYNHIIVLAKNMTGMRNLYRLVTISHLK-FFRKRPLM 389

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE-KRLLTF-----KKLFGDRLYVN 185
              + L+E   EGL+  T   +G   RA     S     KR   +     + +  +   + 
Sbjct: 390  PKAILEEFH-EGLLYGTACVAGEFFRAVLNKESDEELIKRAKFYDYLEVQPVGNNAFMIK 448

Query: 186  LQRHRGYD-----RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
              ++   +     +    +++++     +P+ AT+++ ++ +E     ++L+++      
Sbjct: 449  DDKYADVNSVEDLQRLNKRIIEIGEKANIPVCATSDAHYMFKEQSRKRELLLSM-----W 503

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPR 294
             +       P  Y++   EM+  F+ LPE       + NT +IA  C +I  +       
Sbjct: 504  EKSGEAESHPPVYVRTTKEMLEDFNYLPEEKAKEIVITNTRKIADSCEWIEPLAEEWKSY 563

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
              +    D      ++L +        R+    + K       + RL+ EL  I R  + 
Sbjct: 564  NPKISGAD------DKLVDMCYENA-YRIYGNPLPK-----IVKDRLELELTPIIRHGYG 611

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------- 399
              + I    ++ +      VG  RGS   S  A    IT+++PL                
Sbjct: 612  VLYYIAHKLVKHSNDRGYLVG-SRGSVGSSFVATMAQITEVNPLEPHYVCLNCHWSHFYT 670

Query: 400  --------------------------FSLLFERFLNPDRMSMPDFDIDFC-QDRRDEVIR 432
                                       ++ F  FL  D   +PD D++F   D +    +
Sbjct: 671  DNSVGCGFDLPNKKCPKCGNELNKDGHNIPFAVFLGFDGDKVPDIDLNFSSGDDQAVAHK 730

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            Y +  +G + V +  T   +Q + A   V +                             
Sbjct: 731  YTEELFGRDNVFRAGTIAGIQDRTAFGLVKKY---------------------------- 762

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVR 550
               +  R+  + D  ++    +S  + G+ R    H AGI++  R   +    P+     
Sbjct: 763  ---AENRQLNVNDIFIE---SLSSDIVGVKRTTGQHPAGIMVCPRDMDIHNFTPLQYAAN 816

Query: 551  S------------DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
                             T F+   I    ++K D LG     +++   D        VD 
Sbjct: 817  KKHEKDEDGNIIPGTITTHFDYHSI-SGRMLKLDILGHDDPKIIRMLQDITG-----VDP 870

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESS------GMRQALEGMQPDCIEDIIALVSLYRP 652
              IPF++ +   L      LGI   +        G++    G+       +  ++   +P
Sbjct: 871  LHIPFNEQKVLSLFQNTDALGISSEQLEKVIGHKGVKVGAIGLPEYGTPFVRVMLEDTKP 930

Query: 653  GPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLS 708
                 +V  +   +G +  ++    LI     + +  I  ++ +M       + +  S  
Sbjct: 931  KNFSELVRISGFSHGTDVWLNNAKDLITSGKVKLEEAISTRDDIMNYLMKHGVDALISFK 990

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
              + +R+  G +             +  ++  I +      F    K   Y F +SHA A
Sbjct: 991  TMENVRKGKGLEKG-----------NSNNEKYIREANVPEWFIQSCKKISYLFPRSHAVA 1039

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLE-----------------------------MDNV 799
            Y +++++ AW K +YP+ F A+  T+                                NV
Sbjct: 1040 YVMMAFRIAWFKVYYPLAFYASYFTIRAEGSFNSLVILKGLEAQRKEILRISSLERPTNV 1099

Query: 800  EK----IKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
            +K    + +   +      + +P S+      +FK+ D ++      I  +G   A+ I+
Sbjct: 1100 DKENATVIEVAAEMYLRGYEFLPISLTESDAYEFKIVDGKLLPPFNCIPALGNQVAKEIV 1159

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            +A  + PF S ED   R    +     +E +
Sbjct: 1160 QAREEAPFTSKEDLKKRGKVSQSVIETMEEM 1190


>gi|21282876|ref|NP_645964.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MW2]
 gi|49486103|ref|YP_043324.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MSSA476]
 gi|151221386|ref|YP_001332208.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
            Newman]
 gi|221142498|ref|ZP_03566991.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
            JKD6009]
 gi|258452563|ref|ZP_05700569.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A5948]
 gi|262048156|ref|ZP_06021043.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus D30]
 gi|262051326|ref|ZP_06023549.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
            930918-3]
 gi|282920508|ref|ZP_06328229.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A9765]
 gi|284024257|ref|ZP_06378655.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus 132]
 gi|297208090|ref|ZP_06924521.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
            51811]
 gi|300912171|ref|ZP_07129614.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381172|ref|ZP_07363825.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
            BAA-39]
 gi|56748669|sp|Q6G9U9|DPO3_STAAS RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|73919251|sp|Q5HGG7|DPO3_STAAC RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|172049022|sp|A6QGG4|DPO3_STAAE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|21204315|dbj|BAB95012.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
            subsp. aureus MW2]
 gi|49244546|emb|CAG42975.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
            MSSA476]
 gi|150374186|dbj|BAF67446.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
            subsp. aureus str. Newman]
 gi|257859781|gb|EEV82623.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A5948]
 gi|259160701|gb|EEW45722.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
            930918-3]
 gi|259163722|gb|EEW48277.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus D30]
 gi|282594170|gb|EFB99157.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A9765]
 gi|296887333|gb|EFH26235.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
            51811]
 gi|300886417|gb|EFK81619.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
 gi|302751087|gb|ADL65264.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus str. JKD6008]
 gi|304340155|gb|EFM06096.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
            BAA-39]
 gi|315198506|gb|EFU28835.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS01]
 gi|329313934|gb|AEB88347.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus T0131]
 gi|329727848|gb|EGG64299.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus 21189]
          Length = 1438

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 325/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 582  VQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 641  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 700  DLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 760  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  + A       +         Q    RL+ EL  I    F+  +
Sbjct: 816  PRMEGAN----EEIRELSYANARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 924

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 985  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK-------------- 1030

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1031 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1065

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1119

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E                 +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1180 TDVWLG--------------NAQELIKTGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1224

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +  ++ K          E  I    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1225 IMESVRKGK-----GLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1275 AVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1334

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA  
Sbjct: 1335 LTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEARD 1394

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1395 DGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLD 76
           G +  
Sbjct: 396 GMEGM 400


>gi|298694556|gb|ADI97778.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus ED133]
          Length = 1436

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 325/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 580  VQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 638

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 639  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQ 697

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 698  DLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 757

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 758  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 813

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  + A       +         Q    RL+ EL  I    F+  +
Sbjct: 814  PRMEGAN----EEIRELSYANARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 863

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 864  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 922

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 923  VGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 982

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 983  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK-------------- 1028

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1029 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1063

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1064 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1117

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E                 +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1118 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1177

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1178 TDVWLG--------------NAQELIKTGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1222

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +  ++ K          E  I    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1223 IMESVRKGK-----GLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVLM 1272

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1273 AVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1332

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA  
Sbjct: 1333 LTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEARD 1392

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1393 DGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1431



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 393

Query: 72  GCQLD 76
           G +  
Sbjct: 394 GMEGM 398


>gi|282918963|ref|ZP_06326698.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus C427]
 gi|282316773|gb|EFB47147.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus C427]
          Length = 1438

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 324/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 582  VQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 641  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 700  DLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 760  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  + A       +         Q    RL+ EL  I    F+  +
Sbjct: 816  PRMEGAN----EEIRELSYANARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 924

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 985  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK-------------- 1030

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1031 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1065

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1119

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E                 +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1180 TDVWLG--------------NAQELIKTGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1224

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +  ++ K          E  I    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1225 IMESVRKGK-----GLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1275 AVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1334

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      +F +    +     ++ G+G   A+ I+EA  
Sbjct: 1335 LTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGETLIPPFISVPGLGENVAKRIVEARD 1394

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1395 DGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLD 76
           G +  
Sbjct: 396 GMEGM 400


>gi|258423895|ref|ZP_05686780.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A9635]
 gi|257845924|gb|EEV69953.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A9635]
          Length = 1438

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 325/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 582  VQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 641  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 700  DLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 760  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  + A       +         Q    RL+ EL  I    F+  +
Sbjct: 816  PRMEGAN----EEIRELSYANARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 924

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 985  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK-------------- 1030

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1031 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1065

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1119

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E                 +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1180 TDVWLG--------------NAQELIKTGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1224

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +  ++ K          E  I    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1225 IMESVRKGK-----GLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1275 AVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1334

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA  
Sbjct: 1335 LTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEARD 1394

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1395 DGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLD 76
           G +  
Sbjct: 396 GMEGM 400


>gi|49483427|ref|YP_040651.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282903819|ref|ZP_06311707.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus C160]
 gi|282905582|ref|ZP_06313437.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            Btn1260]
 gi|282908557|ref|ZP_06316387.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus WW2703/97]
 gi|283958007|ref|ZP_06375458.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus A017934/97]
 gi|297591291|ref|ZP_06949929.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
 gi|56748683|sp|Q6GHH1|DPO3_STAAR RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|49241556|emb|CAG40242.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
            MRSA252]
 gi|282327619|gb|EFB57902.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus WW2703/97]
 gi|282330874|gb|EFB60388.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            Btn1260]
 gi|282595437|gb|EFC00401.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus C160]
 gi|283790156|gb|EFC28973.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus A017934/97]
 gi|297576177|gb|EFH94893.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
 gi|315194152|gb|EFU24545.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS00]
          Length = 1438

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 324/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 582  VQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 641  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 700  DLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 760  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  + A       +         Q    RL+ EL  I    F+  +
Sbjct: 816  PRMEGAN----EEIRELSYANARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 924

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 985  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK-------------- 1030

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1031 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1065

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1119

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E                 +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1180 TDVWLG--------------NAQELIKTGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1224

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +  ++ K          E  I    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1225 IMESVRKGK-----GLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1275 AVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1334

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      +F +    +     ++ G+G   A+ I+EA  
Sbjct: 1335 LTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGETLIPPFISVPGLGENVAKRIVEARD 1394

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1395 DGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLD 76
           G +  
Sbjct: 396 GMEGM 400


>gi|312143668|ref|YP_003995114.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904319|gb|ADQ14760.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
          Length = 1401

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 187/990 (18%), Positives = 349/990 (35%), Gaps = 207/990 (20%)

Query: 19   SYSLLEGALSLNNILDKIAADQQPAIA------ITDTNNLFSALEFSQKACA-----AGI 67
             Y++L+       ++      +   +A      + D +           A A       +
Sbjct: 494  EYTVLDTLALSRALIKDSKNYKLNTLAEYFSVELDDHH------RALADADATAEILKKL 547

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
              II    + +++D     ++           VLL    +G + L +LVS  +L D   +
Sbjct: 548  LAIIEKDDNSNLKDINDYISKIDWKDLRPFHAVLLAKNKKGLKNLYKLVSISHL-DNFYR 606

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL------LTFKKLFGDR 181
              RI  S L +   +GL++ +   SG I +AF  N  +   K++      L  + L  + 
Sbjct: 607  KPRILKSKLLQ-HRKGLLIGSACESGQIYQAFINNRPKNEIKKIAKLYDYLELQPLANNE 665

Query: 182  LYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
              +  + +   D      ++ QL       +VAT ++ FL  +D    ++L A  +    
Sbjct: 666  FLIPEKVNSREDLININKKIYQLGQELNKEVVATTDAHFLDPKDSIFREILQAGQNFADA 725

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEK 298
                     P  Y +   EM++ FS      A E  ++   +    ++   PI       
Sbjct: 726  EN------QPPLYYRTTEEMLAEFSYFDGQTAKEIVIDNPNKILSKIEAIQPIPDGLYTP 779

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E +      E+E+R  A         Q         Q    RL+ ELN I    F+  +L
Sbjct: 780  EIEGA----EDEIREMAYQKAHQYYGQEL------PQLVIDRLEKELNSIIENGFAVIYL 829

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
            I    ++ +  +   VG  RGS   S  A    IT+++PL                    
Sbjct: 830  IAHKLVKKSLDDGYLVG-SRGSVGSSFVATMTGITEVNPLPPHYRCPECSNYEFVDSESV 888

Query: 400  ---------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
                                 F + FE F+  +   +PD D++F  + + E+ RY ++ +
Sbjct: 889  GSGIDLADKKCECGAKYIKDGFDIPFEVFMGFEGNKVPDIDLNFSGEYQSEIHRYTEDYF 948

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G + V +  T  ++  + A   V   L     +V R                        
Sbjct: 949  GRDYVYKAGTISTIADRTAFGFVKNYLDDRGIEVKR------------------------ 984

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRS---DL 553
                     +DRL+   +   G+ R    H  G++I  +   +    P+         D+
Sbjct: 985  -------AEIDRLV---KGCTGVRRTTGQHPGGLMIVPKSKNIFDFTPIQHPANDQETDI 1034

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
              T F+   I    ++K D LG    T L+   D        ++   +P DD  T  + +
Sbjct: 1035 RTTHFDYHSI-SGRILKLDLLGHDDPTSLKMLEDMTG-----IEPKKVPLDDQATMSIFS 1088

Query: 614  TKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            +                TLGI +  +S ++Q L   +P    +++ +  L       ++ 
Sbjct: 1089 STDKLGVDSAVLGTDIGTLGIPEFGTSFVQQMLRDTRPSSFSELVRISGLSHGT---DVW 1145

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            + N +K           LI     +   VI  ++ +M    L  G    +A V+   + K
Sbjct: 1146 LNNAQK-----------LIKQGKAKLAEVISVRDDIMNY-LLTKGLDPLKAFVIMENVRK 1193

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
                         ++   +N +      N +    K   Y F K+HAAAY +++Y+ A+ 
Sbjct: 1194 GKG----------LTEEEENIMRDKNVPNWYIDSCKKIKYMFPKAHAAAYVMMAYRIAYF 1243

Query: 780  KTHYPVEFLAASMTLEMDNVE---------------------------------KIKKFC 806
            K H+P  F     +++ D+ +                                 K+ K  
Sbjct: 1244 KVHHPAAFYTTYFSIKADDFDAQLACNGKAKVIAKIKELENKGNEITTKESGTLKVLKIV 1303

Query: 807  QDARQFNIQIMPPSVNTP-CVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
             +A    I+ +   +      +F+ +GDN++   L +++G+G + A  ++       F S
Sbjct: 1304 LEAMMRGIEFLAVDIYQSKATEFQHLGDNKLLAPLISLQGLGGSAAESVVREREKSDFTS 1363

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +E+  +R    K    V+E L   G+LD  
Sbjct: 1364 IEELSNRTCLTKT---VIEVLKEHGSLDEL 1390



 Score = 72.3 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++  +++  ++ + A     A+AITD   + +  +  Q      +Q I 
Sbjct: 302 VDLHLHTQMSSMDCVMNVKKLVKRAADWGHKAVAITDHGVVQAFPDAYQAGQKHDVQIIY 361


>gi|257425318|ref|ZP_05601743.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus 55/2053]
 gi|257427979|ref|ZP_05604377.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus 65-1322]
 gi|257430612|ref|ZP_05606994.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            68-397]
 gi|257433372|ref|ZP_05609730.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            E1410]
 gi|257436214|ref|ZP_05612261.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus M876]
 gi|282910836|ref|ZP_06318639.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus WBG10049]
 gi|282914041|ref|ZP_06321828.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
            aureus subsp. aureus M899]
 gi|282924086|ref|ZP_06331762.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus C101]
 gi|293501073|ref|ZP_06666924.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus 58-424]
 gi|293510035|ref|ZP_06668743.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus M809]
 gi|293526621|ref|ZP_06671306.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
            aureus subsp. aureus M1015]
 gi|257271775|gb|EEV03913.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus 55/2053]
 gi|257274820|gb|EEV06307.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus 65-1322]
 gi|257278740|gb|EEV09359.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            68-397]
 gi|257281465|gb|EEV11602.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            E1410]
 gi|257284496|gb|EEV14616.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus M876]
 gi|282314058|gb|EFB44450.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus C101]
 gi|282322109|gb|EFB52433.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
            aureus subsp. aureus M899]
 gi|282325441|gb|EFB55750.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus WBG10049]
 gi|290920693|gb|EFD97756.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
            aureus subsp. aureus M1015]
 gi|291096078|gb|EFE26339.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus 58-424]
 gi|291466979|gb|EFF09497.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus M809]
 gi|312438356|gb|ADQ77427.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH60]
          Length = 1438

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 324/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 582  VQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 641  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 700  DLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 760  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  + A       +         Q    RL+ EL  I    F+  +
Sbjct: 816  PRMEGAN----EEIRELSYANARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 924

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 985  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK-------------- 1030

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1031 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1065

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1119

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E                 +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1180 TDVWLG--------------NAQELIKTGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1224

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +  ++ K          E  I    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1225 IMESVRKGK-----GLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1275 AVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1334

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      +F +    +     ++ G+G   A+ I+EA  
Sbjct: 1335 LTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGETLIPPFISVPGLGENVAKRIVEARD 1394

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1395 DGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLD 76
           G +  
Sbjct: 396 GMEGM 400


>gi|222529790|ref|YP_002573672.1| DNA polymerase III subunit alpha [Caldicellulosiruptor bescii DSM
            6725]
 gi|222456637|gb|ACM60899.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor bescii DSM
            6725]
          Length = 1402

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 164/880 (18%), Positives = 301/880 (34%), Gaps = 168/880 (19%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
                +LV   +G + L +LVS  +L +   +  RI  S L ++  +GL++ +   SG I 
Sbjct: 579  YHATILVKNQQGLKNLYKLVSYSHL-EYFYKRPRIPKSLLIQL-KDGLLIGSACESGEIF 636

Query: 157  RAFFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRGYDRYRE--SQVVQLAYTHE 208
            RAF    S+   +++  F           +   +     +  +  RE   ++  L     
Sbjct: 637  RAFLEGKSEEEIEKIAAFYDFLEIMPVENNSFLIREGYLKDEEDLREINRKIYNLGKKLG 696

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
              +VAT+++ +          +L    H+      +     P  Y +   EM+  F  L 
Sbjct: 697  KLVVATSDAHYCHPHQRILRQIL---KHNQGYDDVEND---PLLYFRTTDEMLKEFEYLG 750

Query: 269  E--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
                 E  VE   + + +++   PI       + +  ++E  N    KA           
Sbjct: 751  SDSCYEVVVENTNKIADMIEDVKPIPDETFPPKIEGAEEEIYNMTMKKAHE--------- 801

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
             I      +  R RL+ ELN I +  F+  +LI    +  +  +   VG  RGS   S+ 
Sbjct: 802  -IYGDPLPEIVRARLEKELNSIIKNGFAVMYLIAQKLVFKSLSDGYLVG-SRGSVGSSLV 859

Query: 387  AYALTITDIDPLR-----------------------------------------FSLLFE 405
            A    IT+++PL                                            + FE
Sbjct: 860  ATMCGITEVNPLPPHYICPNCKYSEFITDGSVGCGYDLEDKNCPRCGEKLKKDGHDIPFE 919

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
             FL  D    PD D++F  D +    ++ +  +G   V +  T  ++  K A   V +  
Sbjct: 920  TFLGFDGDKEPDIDLNFSGDYQPIAHKFTEELFGQGYVFRAGTISTVAEKTAHGFVTKYA 979

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            +                       + ++                 +L +SQ   G+ R  
Sbjct: 980  E----------------------EKGLSLHP------------AEILRLSQGCTGVKRTT 1005

Query: 526  STHAAGIVIGDRP--LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              H  G++I  R   +    P+     S    +  T F+   I    L+K D LG    T
Sbjct: 1006 GQHPGGLMIVPRDKEIFDFTPIQHPADSTDKSVITTHFDYHAI-SGRLLKLDILGHDDPT 1064

Query: 581  LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +++   D        VD   IP DD  T  + T+   LGI   +         G+     
Sbjct: 1065 VIRMLQDLTG-----VDPRSIPLDDKATMSIFTSTEALGISPEDID-CEVGTFGIPEFGT 1118

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIA 699
              +  ++   +P     +V  +   +G     +    L+   +   + VI  ++ +M   
Sbjct: 1119 RFVRQMLIETKPKTFAELVRISGLSHGTNVWTNNAQDLVRNGIATLKEVISTRDDIMLYL 1178

Query: 700  Q---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
                +    S    + +R+  G K ++E    +   +              + +    K 
Sbjct: 1179 IQKGVPPKDSFRIMEDVRKGKGLKPEDE-QLLRAHNVP-------------DWYIESCKK 1224

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIK 803
              Y F K+HAAAY +++++ A+ K HY   F A   T+  D+ +             KI+
Sbjct: 1225 ITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYFTVRADDFDYATILKGRDAIRQKIR 1284

Query: 804  --------------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAI 842
                                +   +     ++  P  +N    + F + D  +     A+
Sbjct: 1285 DLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAEKFIIKDGGLLIPFNAL 1344

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
              VG   A+ I+EA  +  F S++D   R    K    +L
Sbjct: 1345 PNVGVAAAKSIVEARKEGRFLSVDDLIRRAKLNKQVIEIL 1384



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   S   I+   A+    A+AITD   + +  E  + + +  I+ I 
Sbjct: 304 VELHAHTKMSAMDAVCSAEEIIKLAASMGHRAVAITDHGVVQAFPEAQEASKSCNIKVIY 363

Query: 72  GCQLD 76
           G +  
Sbjct: 364 GMECY 368


>gi|229013001|ref|ZP_04170166.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
 gi|228748255|gb|EEL98115.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
          Length = 1435

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 175/934 (18%), Positives = 321/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 580  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHLTLLATSDVGLKNLYKLVSYSHL-NYFY 638

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 639  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 697

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 698  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAIYRKILVSSQGG-- 755

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +  +EM+  FS L E  A E  V    + + ++    P+      
Sbjct: 756  -ANPLNRHSLPPVHFRTTNEMLDCFSFLGEDKAKEIVVTNTHKIASLIGDVRPVKDDLYT 814

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +       +   +I      +    RL+ EL  I    F+  +
Sbjct: 815  PKIEGA----DDETRDMSY------IMARSIYGDELPEIVEARLEKELKSIIGHGFAVIY 864

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 865  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 923

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 924  VGSGFDLPDKECPTCNVPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKL 983

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 984  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1019

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1020 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGA 1069

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1070 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1123

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1124 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1183

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1184 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1229

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE +++            +        +    K   Y F K+HAAAY +++ 
Sbjct: 1230 KG--KGVPEEWEEE------------MRNNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1275

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1276 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLT 1335

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   +F +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1336 VLEMTLEMCERGYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAAFSIVEARKNG 1395

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1396 DFLSKEDLQQR---SKVSKTIIEYLDGQGCLGDL 1426



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ +       AIA+TD     S  E       AG++ + 
Sbjct: 334 VELHLHTPMSQMDAVTSVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVLY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 394 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 427


>gi|269202881|ref|YP_003282150.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
 gi|295406201|ref|ZP_06816008.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297244429|ref|ZP_06928312.1| DNA polymerase III [Staphylococcus aureus A8796]
 gi|262075171|gb|ACY11144.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
 gi|294968789|gb|EFG44811.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297178459|gb|EFH37705.1| DNA polymerase III [Staphylococcus aureus A8796]
          Length = 1436

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 173/943 (18%), Positives = 324/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 580  VQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 638

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 639  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQ 697

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 698  DLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 757

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 758  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 813

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  +         +         Q    RL+ EL  I    F+  +
Sbjct: 814  PRMEGAN----EEIRELSYTNARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 863

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 864  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 922

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 923  VGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 982

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 983  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK-------------- 1028

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1029 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1063

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1064 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1117

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E                 +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1118 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1177

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1178 TDVWLG--------------NAQELIKTGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1222

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +  ++ K          E  I    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1223 IMESVRKGK-----GLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVLM 1272

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1273 AVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1332

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA  
Sbjct: 1333 LTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEARD 1392

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1393 DGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1431



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 393

Query: 72  GCQLD 76
           G +  
Sbjct: 394 GMEGM 398


>gi|302332870|gb|ADL23063.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus JKD6159]
          Length = 1438

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/943 (18%), Positives = 325/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 582  VQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 641  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 700  DLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 760  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  + A       +         Q    RL+ EL  I    F+  +
Sbjct: 816  PRMEGAN----EEIRELSYANARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 924

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 985  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK-------------- 1030

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1031 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1065

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1119

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E                 +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1180 TDVWLG--------------NAQELIKTGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1224

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +  ++ K          E  I    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1225 IMESVRKGK-----GLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1275 AVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1334

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA  
Sbjct: 1335 LTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEARD 1394

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1395 DGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLD 76
           G +  
Sbjct: 396 GMEGM 400


>gi|229061421|ref|ZP_04198766.1| DNA polymerase III polC-type [Bacillus cereus AH603]
 gi|228717844|gb|EEL69492.1| DNA polymerase III polC-type [Bacillus cereus AH603]
          Length = 1433

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 175/934 (18%), Positives = 321/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAIYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +  +EM+  FS L E  A E  V    + + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTNEMLDCFSFLGEDKAKEIVVTNTHKIASLIGDVRPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +       +   +I      +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSY------IMARSIYGDELPEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPTCNVPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKL 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE +++            +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEEE------------MRNNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   +F +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAAFSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 DFLSKEDLQQR---SKVSKTIIEYLDGQGCLGDL 1424



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ +       AIA+TD     S  E       AG++ + 
Sbjct: 332 VELHLHTPMSQMDAVTSVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVLY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|15924254|ref|NP_371788.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926847|ref|NP_374380.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus N315]
 gi|148267754|ref|YP_001246697.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH9]
 gi|150393813|ref|YP_001316488.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH1]
 gi|156979585|ref|YP_001441844.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315620|ref|ZP_04838833.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
            CF-Marseille]
 gi|255006051|ref|ZP_05144652.2| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
            Mu50-omega]
 gi|257795680|ref|ZP_05644659.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
 gi|258416083|ref|ZP_05682351.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|258421666|ref|ZP_05684590.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
            A9719]
 gi|258434822|ref|ZP_05688896.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A9299]
 gi|258444602|ref|ZP_05692931.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A8115]
 gi|258447565|ref|ZP_05695709.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A6300]
 gi|258449407|ref|ZP_05697510.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A6224]
 gi|258454786|ref|ZP_05702750.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A5937]
 gi|282892752|ref|ZP_06300987.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A8117]
 gi|282927606|ref|ZP_06335222.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A10102]
 gi|296274822|ref|ZP_06857329.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MR1]
 gi|54036992|sp|P63982|DPO3_STAAN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|54040953|sp|P63981|DPO3_STAAM RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|166217451|sp|A7X1P4|DPO3_STAA1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|13701064|dbj|BAB42359.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
            subsp. aureus N315]
 gi|14247034|dbj|BAB57426.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
            subsp. aureus Mu50]
 gi|147740823|gb|ABQ49121.1| DNA polymerase III catalytic subunit, PolC type [Staphylococcus
            aureus subsp. aureus JH9]
 gi|149946265|gb|ABR52201.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus JH1]
 gi|156721720|dbj|BAF78137.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
            subsp. aureus Mu3]
 gi|257789652|gb|EEV27992.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
 gi|257839231|gb|EEV63707.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|257842352|gb|EEV66777.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
            A9719]
 gi|257849183|gb|EEV73165.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A9299]
 gi|257850095|gb|EEV74048.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A8115]
 gi|257853756|gb|EEV76715.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A6300]
 gi|257857395|gb|EEV80293.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A6224]
 gi|257863169|gb|EEV85933.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A5937]
 gi|282590609|gb|EFB95686.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A10102]
 gi|282764749|gb|EFC04874.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A8117]
 gi|285816946|gb|ADC37433.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981]
 gi|312829658|emb|CBX34500.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus ECT-R 2]
 gi|315131058|gb|EFT87042.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727084|gb|EGG63540.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus 21172]
          Length = 1438

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 173/943 (18%), Positives = 324/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 582  VQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 641  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 700  DLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 760  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  +         +         Q    RL+ EL  I    F+  +
Sbjct: 816  PRMEGAN----EEIRELSYTNARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 924

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 985  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK-------------- 1030

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1031 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1065

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1119

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E                 +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1180 TDVWLG--------------NAQELIKTGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1224

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +  ++ K          E  I    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1225 IMESVRKGK-----GLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1275 AVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1334

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA  
Sbjct: 1335 LTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEARD 1394

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1395 DGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLD 76
           G +  
Sbjct: 396 GMEGM 400


>gi|283470479|emb|CAQ49690.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus ST398]
          Length = 1438

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 173/943 (18%), Positives = 325/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 582  VQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 641  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 700  DLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 760  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  + A       +         Q    RL+ EL  I    F+  +
Sbjct: 816  PRMEGAN----EEIRELSYANARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 924

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 985  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK-------------- 1030

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1031 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1065

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1119

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            +                 +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 QVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1180 TDVWLG--------------NAQELIKTGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1224

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +  ++ K          E  I    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1225 IMESVRKGK-----GLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1275 AVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDV 1334

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA  
Sbjct: 1335 LTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEARD 1394

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1395 DGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLD 76
           G +  
Sbjct: 396 GMEGM 400


>gi|258611758|ref|ZP_05711628.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503]
 gi|258605945|gb|EEW18553.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503]
          Length = 1144

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 176/935 (18%), Positives = 305/935 (32%), Gaps = 194/935 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            I+                   +G       P    +   TA G + L +L++   + +  
Sbjct: 288  IKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYF 346

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLF 178
             +  RI  S L+++  EGLI+ T  S G +  A      Q AEK    +       K ++
Sbjct: 347  YRVPRIPRSQLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVY 405

Query: 179  GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               +   L R           +V++      P+VAT N  +    D     +L+      
Sbjct: 406  APLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILIHSQGG- 464

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFI 296
              +        PD + +   EM+  F+ L E  A E  V  A      ++   PI     
Sbjct: 465  --ANPLNRAELPDVHFRTTDEMLKEFAFLGEEKAKEIVVTNANLVVDWMEDLKPIKDELY 522

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              + D      E+E+RN + A       +         +    RL+ EL  I    F+  
Sbjct: 523  TPKIDGA----EDEVRNMSYAMAHQLYGEKL------PEIVEARLEKELKSIIGHGFAVI 572

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------- 403
            +LI    ++ +  +   VG  RGS   S  A    IT+++PL    L             
Sbjct: 573  YLISHKLVKKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDG 631

Query: 404  ----------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                        FE FL      +PD D++F  D +     Y +
Sbjct: 632  SVGSGFDLPDKDCPHCGTPYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTK 691

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G + V +  T G++  K A   V R  +   +   R                     
Sbjct: 692  EIFGEDYVFRAGTIGTVAEKTAFGYV-RNYERDMNMTIRGA------------------- 731

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVR 550
                        +DRL+       G+ R    H  GI++      +    P+        
Sbjct: 732  -----------EIDRLVA---GCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATD 777

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
            S+   T F+   I    ++K D LG    T ++   D        +D   IP DD +   
Sbjct: 778  SEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDL-----SGIDPKTIPTDDPDVMK 831

Query: 611  LL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            L               +  GTLGI +  +  +RQ LE  +P    +++ +  L     + 
Sbjct: 832  LFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHGTDVW 891

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVL 713
                            +   LI     E   VI  ++ +M       L S  +    + +
Sbjct: 892  LG--------------NAEELIKNKTCELPDVIGCRDDIMVFLIYQGLESSLAFKIMESV 937

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+   K + EEM++             +        +    K   Y F K+HAAAY +++
Sbjct: 938  RKG--KGLTEEMEEA------------MMANKVPLWYIESCKKIKYMFPKAHAAAYVLMA 983

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVE--------------------------------- 800
             + A+ K HYP+ F A   T+  D+ +                                 
Sbjct: 984  VRIAYFKVHYPLYFYATYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLL 1043

Query: 801  KIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
             + +   +               +   +F +  + +     AI  +GT  A+ I+ A  +
Sbjct: 1044 TVLEIANEMLARGFHFQKVDLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAAREN 1103

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              F S ED   R    K+++ +++ +   G L+  
Sbjct: 1104 GEFLSKEDLQQR---GKVSKTIIQYMDDQGCLEGL 1135



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 42  AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 101


>gi|229134625|ref|ZP_04263435.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
 gi|228648886|gb|EEL04911.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
          Length = 1433

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 175/934 (18%), Positives = 321/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAIYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +  +EM+  FS L E  A E  V    + + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTNEMLDCFSFLGEDKAKEIVVTNTHKIASLIGDVRPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +       +   +I      +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSY------IMARSIYGDELPEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPTCNVPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKL 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE +++            +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEEE------------MRNNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   +F +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAAFSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 DFLSKEDLQQR---SKVSKTIIEYLDGQGCLGDL 1424



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ +       AIA+TD     S  E       AG++ + 
Sbjct: 332 VELHLHTPMSQMDAVTSVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVLY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|163941555|ref|YP_001646439.1| DNA polymerase III PolC [Bacillus weihenstephanensis KBAB4]
 gi|163863752|gb|ABY44811.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis KBAB4]
          Length = 1433

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 175/934 (18%), Positives = 321/934 (34%), Gaps = 193/934 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578  LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637  RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696  HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAIYRKILVSSQGG-- 753

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +        P  + +  +EM+  FS L E  A E  V    + + ++    P+      
Sbjct: 754  -ANPLNRHSLPPVHFRTTNEMLDCFSFLGEDKAKEIVVTNTHKIASLIGDVRPVKDDLYT 812

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E R+ +       +   +I      +    RL+ EL  I    F+  +
Sbjct: 813  PKIEGA----DDETRDMSY------IMARSIYGDELPEIVEARLEKELKSIIGHGFAVIY 862

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S  A  + IT+++PL                   
Sbjct: 863  LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 922  VGSGFDLPDKECPTCNVPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKL 981

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V               K   ND    +         
Sbjct: 982  LFGEDYVYRAGTIGTVAEKTAYGYV---------------KGYANDHNLTI--------- 1017

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +  +DRL+       G+ R    H  GI++      +    P+     S   
Sbjct: 1018 -------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGA 1067

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    L+K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1068 EWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKI 1121

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1122 FSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHGTDVWL 1181

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLR 714
                           + + LI         VI  ++ +M       L    +    + +R
Sbjct: 1182 G--------------NANELIYNGTCTLSEVIGCRDDIMVYLIYQGLDPSLAFKIMESVR 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +   K + EE +++            +        +    K   Y F K+HAAAY +++ 
Sbjct: 1228 KG--KGVPEEWEEE------------MRNNNVPGWYIDSCKKIKYMFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS----- 820
            + A+ K H+ + F AA  T+  D+ +          I+    +  Q  +   P       
Sbjct: 1274 RIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLT 1333

Query: 821  --------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                  +   +F +  + +     A+ G+GT  A  I+EA  + 
Sbjct: 1334 VLEMTLEMCERGYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAAFSIVEARKNG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             F S ED   R    K+++ ++E L   G L   
Sbjct: 1394 DFLSKEDLQQR---SKVSKTIIEYLDGQGCLGDL 1424



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ +       AIA+TD     S  E       AG++ + 
Sbjct: 332 VELHLHTPMSQMDAVTSVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVLY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|329121280|ref|ZP_08249907.1| DNA-directed DNA polymerase III alpha subunit [Dialister
            micraerophilus DSM 19965]
 gi|327470214|gb|EGF15677.1| DNA-directed DNA polymerase III alpha subunit [Dialister
            micraerophilus DSM 19965]
          Length = 1207

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 170/991 (17%), Positives = 341/991 (34%), Gaps = 193/991 (19%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S L+G +    I+        PA+AITD   + +  +  + A     + I 
Sbjct: 276  VELHLHTKMS-LDGLIDNEEIIKTAKEWNHPAVAITDHGVIQAFPKIQEIAAKYKQKVIY 334

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +       +             I++L     G + L  LV+  +L    ++   +
Sbjct: 335  GMEGYMIEN----IPEDVDADRQKYNHIIVLAKNMTGMRNLYRLVTISHLK-FFRKRPLM 389

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE-KRLLTF-----KKLFGDRLYVN 185
              + L+E   EGL+  T   +G   RA     S     KR   +     + +  +   + 
Sbjct: 390  PKAILEEFH-EGLLYGTACVAGEFFRAVLNKESDEELIKRAKFYDYLEVQPVGNNAFMIK 448

Query: 186  LQRHRGYD-----RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
              ++   +     +    +++++     +P+ AT+++ ++ +E     ++L+++      
Sbjct: 449  DDKYADVNSVEDLQKLNKRIIEIGEKANIPVCATSDAHYMFKEQSRKRELLLSM-----W 503

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPR 294
             +       P  Y++   EM+  F+ LPE       + NT +IA  C +I  +       
Sbjct: 504  EKSGEAESHPPVYVRTTKEMLEDFNYLPEEKAKEIVITNTRKIADSCEWIEPLAEEWKSY 563

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
              +    D      ++L +        R+    + K       + RL+ EL  I R  + 
Sbjct: 564  NPKISGAD------DKLVDMCYENA-YRIYGNPLPK-----IVKDRLELELTPIIRHGYG 611

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------- 399
              + I    ++ +      VG  RGS   S  A    IT+++PL                
Sbjct: 612  VLYYIAHKLVKHSNDRGYLVG-SRGSVGSSFVATMAQITEVNPLEPHYVCLNCHWSHFYT 670

Query: 400  --------------------------FSLLFERFLNPDRMSMPDFDIDFC-QDRRDEVIR 432
                                       ++ F  FL  D   +PD D++F   D +    +
Sbjct: 671  DNSVGCGFDLPNKKCPKCGNELNKDGHNIPFAVFLGFDGDKVPDIDLNFSSGDDQAVAHK 730

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            Y +  +G + V +  T   +Q + A   V +                             
Sbjct: 731  YTEELFGRDNVFRAGTIAGIQDRTAFGLVKKY---------------------------- 762

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVR 550
               +  R+  + D  ++    +S  + G+ R    H AGI++  R   +    P+     
Sbjct: 763  ---AENRQLNVNDIFIE---SLSSDIVGVKRTTGQHPAGIMVCPRDMDIHNFTPLQYAAN 816

Query: 551  S------------DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
                             T F+   I    ++K D LG     +++   D        VD 
Sbjct: 817  KKHEKDEDGNIIPGTITTHFDYHSI-SGRMLKLDILGHDDPKIIRMLQDITG-----VDP 870

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESS------GMRQALEGMQPDCIEDIIALVSLYRP 652
              IPF++ +   L      LGI   +        G++    G+       +  ++   +P
Sbjct: 871  LHIPFNEQKVLSLFQNTDALGISSEQLEKVIGHKGVKVGAIGLPEYGTPFVRVMLEDTKP 930

Query: 653  GPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLS 708
                 +V  +   +G +  ++    LI     + +  I  ++ +M       + +  S  
Sbjct: 931  KNFSELVRISGFSHGTDVWLNNAKDLITSGKVKLEEAISTRDDIMNYLMKHGVDALVSFK 990

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
              + +R+  G +             +  ++  I +      F    K   Y F +SHA A
Sbjct: 991  TMENVRKGKGLEKG-----------NSNNEKYIREANVPEWFIQSCKKISYLFPRSHAVA 1039

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLE-----------------------------MDNV 799
            Y +++++ AW K +YP+ F A+  T+                                NV
Sbjct: 1040 YVMMAFRIAWFKVYYPLAFYASYFTIRAEGSFNSLVILKGLEAQRKEILRILSLERPTNV 1099

Query: 800  EK----IKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
            +K    + +   +      + +P S+      +FK+ D ++      I  +G   A+ I+
Sbjct: 1100 DKENATVIEVAAEMYLRGYEFLPISLTESDAYEFKIVDGKLLPPFNCIPALGNQVAKEIV 1159

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            +A  + PF S ED   R    +     +E +
Sbjct: 1160 QAREEAPFTSKEDLKKRGKVSQSVIETMEEM 1190


>gi|323441043|gb|EGA98750.1| DNA polymerase III PolC [Staphylococcus aureus O11]
          Length = 1436

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 173/943 (18%), Positives = 325/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 580  VQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 638

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV 184
            ++ RI  S L E   EGL++ T    G +  A         EK    +   ++    LY 
Sbjct: 639  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQ 697

Query: 185  NLQRHRGYDR-----YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            +L                 +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 698  DLIDRGLIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 757

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 758  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 813

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  + A       +         Q    RL+ EL  I    F+  +
Sbjct: 814  PRMEGAN----EEIRELSYANARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 863

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 864  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 922

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 923  VGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 982

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 983  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK-------------- 1028

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1029 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1063

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1064 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1117

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            E                 +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1118 EVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1177

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1178 TDVWLG--------------NAQELIKTGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1222

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +  ++ K          E  I    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1223 IMESVRKGK-----GLTEEMIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVLM 1272

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1273 AVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKEMYSRYMDLGKKEKDV 1332

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA  
Sbjct: 1333 LTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEARD 1392

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1393 DGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1431



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 393

Query: 72  GCQLD 76
           G +  
Sbjct: 394 GMEGM 398


>gi|283798089|ref|ZP_06347242.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
 gi|291074233|gb|EFE11597.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
          Length = 1538

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 178/943 (18%), Positives = 317/943 (33%), Gaps = 190/943 (20%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +   + GI+         ++ +  +M+ +     PT   I++L     G   L  L
Sbjct: 669  VKFVEMLKSRGIE------NLDELNEQSRMSVETIRKMPTN-HIIILAKNDVGRINLYRL 721

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL---- 171
            VS   L+    +  RI  S + +   EGLI+ +   +G + +A      +    ++    
Sbjct: 722  VSDSNLV-YYAKRPRIPKSQILKY-REGLIIGSACEAGELYQALLRGVPEAEINKIVSFY 779

Query: 172  --LTFKKLFGDRLYV--NLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDY 225
              L  + L  +   +       +  +  +    ++V+L      P+ AT +  FL  ED 
Sbjct: 780  DYLEIQPLGNNAFMLRDEKSTVKTEEDLKDLNRKIVELGERFNKPVCATCDVHFLDPEDE 839

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIAR 279
                ++MA                   YL+   EM+  F  L         + NT +IA 
Sbjct: 840  VYRRIIMAGKGFKDCDD------QAPLYLRTTEEMLREFEYLGSDKAEEVVITNTRKIAA 893

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
             C  I  V     P  I           +  LRN           +         +   +
Sbjct: 894  MCERISPVRPDKCPPVIP--------NSDEMLRNICYNRAHEMYGEDL------PKIVVE 939

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL+ ELN I    F+  ++I    +  + ++   VG  RGS   S  A    IT+++PL 
Sbjct: 940  RLERELNSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFVATMSGITEVNPLS 998

Query: 400  ---------------------------------------------FSLLFERFLNPDRMS 414
                                                         F + FE FL      
Sbjct: 999  PHYYCTNCHFYDFDSEEVKKFSGMAGCDMPDRLCPVCGKPLKKDGFDIPFETFLGFKGDK 1058

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D++F  + +     Y +  +G  +  +  T G+L  K A   V +           
Sbjct: 1059 EPDIDLNFSGEYQSRAHDYTEVIFGKGQTFRAGTIGTLADKTAFGYVKKYY--------- 1109

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
                                     E R        +  I     G+ R    H  GI++
Sbjct: 1110 -------------------------EERGQRKRACEINRIVTGCVGVRRTTGQHPGGIIV 1144

Query: 535  GD--RPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
                  +    P+     D+ S    T F+   I+   L+K D LG    T+++   D  
Sbjct: 1145 LPHGEEIYSFTPVQHPADDMTSKTITTHFDYHSIDH-NLLKLDILGHDDPTMIRMLQDLT 1203

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                V      IP D  E   L  +   LGI   +  G      G+     +  + ++  
Sbjct: 1204 GLDPV----KDIPLDCKEVMSLFQSTEALGITPDDIGGCPLGALGVPEFGTDFAMQMLLD 1259

Query: 650  YRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GY 705
             +P    ++V      +G +  + +   LI       Q  I  ++ +M          G 
Sbjct: 1260 TKPKYFSDLVRIAGLAHGTDVWLGNAQTLIQEGKATIQTAICTRDDIMVYLISRGLEEGL 1319

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            S +  + +R+  G K + E +              ++     + +    K   Y F K+H
Sbjct: 1320 SFTIMESVRKGKGLKPEWEEE--------------MTAHGVPDWYIWSCKKIKYMFPKAH 1365

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKI-------------- 802
            AAAY +++++ A+ K  YP+ + AA  ++              EK+              
Sbjct: 1366 AAAYVMMAWRIAYCKVFYPLAYYAAFFSIRASGFSYELMCQGREKLEYHLADYKKRLDTL 1425

Query: 803  ----------KKFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
                       +  Q+      + MP  +      +F++ D ++  SL++I G+G   A 
Sbjct: 1426 SKKEQDTLRDMRIVQEMYARGFEFMPIDIYRASARNFQIIDGKLMPSLSSIDGLGEKAAD 1485

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             I+ A+ D PF S EDF +R    K+ + V + +   G L   
Sbjct: 1486 GIVFAAEDGPFLSKEDFINR---SKVTKTVADLMADLGLLKGL 1525



 Score = 75.0 bits (183), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 2/108 (1%)

Query: 3   QYLEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           + ++ SP   V L  H+  S ++G   + +I+ +       AIA+TD   +  A   +  
Sbjct: 417 KRMDNSPVKRVELHCHTKMSDMDGVSEVKDIIKRAKKWGMDAIAVTDHGCV-QAFPDANH 475

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
           A   G    +   ++  + D+LK   +         + V+      G+
Sbjct: 476 AVEKGDGFKVLYGVEGYLVDDLKQLAEDSRGQSLDHTCVVFDIETTGF 523


>gi|323489585|ref|ZP_08094812.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
 gi|323396716|gb|EGA89535.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
          Length = 1435

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 176/931 (18%), Positives = 323/931 (34%), Gaps = 175/931 (18%)

Query: 57   EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
               ++A   GI         +   D  K +              LL    EG + L +LV
Sbjct: 578  HLLKEADQKGILYHDQLNDYVGSGDAYKRSRP--------THCTLLAQNDEGLKNLFKLV 629

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S  ++ +   +  RI  S LQ+   +GL++ +G   G +  A    S +  EK    +  
Sbjct: 630  SASHI-NYFYRVPRIPRSLLQK-HRKGLLVGSGCDKGEVFEAVMQKSMEEVEKTAQFYDY 687

Query: 176  -KLFGDRLYVNLQRHRGYDRYRE-----SQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y +L                 ++V+++   E+PLVAT N  +L E D     
Sbjct: 688  LEVHPKEVYSHLIEREMIRDEWNLEDIIRKLVKISRKLEIPLVATGNVHYLDETDAIFRQ 747

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQV 287
            VL+        +        P  + +  +EM+  F  L    A E  V  + + S ++ V
Sbjct: 748  VLIGSQGG---ANPLNRTKLPKVHFRTTNEMLDAFDFLGSETAHELVVTNSLKISDMIDV 804

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              PI       + +      + E+R  +    +       I      +    R++ EL  
Sbjct: 805  VKPIKDELYTPKIEGA----DEEVRELSYNMAQQ------IYGSPLPEIVEARIEKELKS 854

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------- 400
            I    F+  +LI    ++ +  +   VG  RGS   S+ A    IT+++PL         
Sbjct: 855  IIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLPPHYICRKC 913

Query: 401  ----------------------------------SLLFERFLNPDRMSMPDFDIDFCQDR 426
                                               + FE FL      +PD D++F  + 
Sbjct: 914  KKSEFFDDGSVGSGFDLKDKNCPDCDIPYQKEGQDIPFETFLGFKGDKVPDIDLNFSGEY 973

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            + +   Y +  +G + V +  T G++  K A   V                         
Sbjct: 974  QSKAHNYTKELFGEDNVFRAGTIGTVAEKTAYGYV------------------------- 1008

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVP 544
               +  A+D   R+  +    +DRL+   Q   G+ R    H  GI++      +    P
Sbjct: 1009 ---RGYAND---RDMTIRGAEIDRLV---QGCSGVKRSTGQHPGGIIVVPDYMDIYDFSP 1059

Query: 545  MY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            +        S+   T F+   I    L+K D LG    T+++   D        +D   I
Sbjct: 1060 IQFPADAQDSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG-----IDPKTI 1113

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD E   +     TLG+ + E  G +    G+       +  ++   +P     +V  
Sbjct: 1114 PTDDPEVMKIFAGPETLGVTK-EQIGCKTGTLGIPEFGTRFVRQMLEETKPNTFSELVQI 1172

Query: 662  NNRKNGKEKI-VSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAM 717
            +   +G +    +   LI     +   VI  ++ +M       L S  +    + +R+  
Sbjct: 1173 SGLSHGTDVWLSNAQELIQNGTCQLSDVIGCRDDIMVYLIYQGLESSLAFKIMESVRKG- 1231

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K +  E ++             + K    N +    K   Y F K+HAAAY +++ + A
Sbjct: 1232 -KGLTPEFEEA------------MKKEGVPNWYIESCKKIKYMFPKAHAAAYVLMAVRIA 1278

Query: 778  WMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVN------ 822
            + K H+P+ + AA  T+  ++ +          I+    +     ++      N      
Sbjct: 1279 YFKVHFPILYYAAYFTVRAEDFDVNAMSKGSQSIRSVIDEINSKGLEASTKEKNLLTVME 1338

Query: 823  -------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
                               +    F +    +     AI G+GT  A+ I+ A     F 
Sbjct: 1339 LTLEMVERGYTFQKVDLYKSSADQFIIEGKSLIPPFNAIPGLGTNAAKSIVAAREHGEFL 1398

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            S ED   R    ++++ ++E +   G L+  
Sbjct: 1399 SKEDLQQR---GRVSKTIIEYMDDHGCLEGM 1426



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 59/407 (14%), Positives = 137/407 (33%), Gaps = 56/407 (13%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+++++ + A    PAIAITD   + S  +    +   GI+ I 
Sbjct: 335 VELHLHTPMSQMDAVSSVDSLVSQAAKWGHPAIAITDHAGVQSFPDAYAASKKHGIKAIF 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G + ++ + D + +  + +       + V+      G   + + +  +  +      +  
Sbjct: 395 GLEANL-VDDGVPIAYEERHALLEEETFVVFDLETTGLSAVYDTIIELAAVKIKGGQIID 453

Query: 132 CLSWLQEIGTEG---LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-- 186
                     E     I LTG +   +       ++   E+ +  + +  GD + V    
Sbjct: 454 KFESFANPHHELSSTTIDLTGITDDMV------KNAPEVEEVIRKYHEWAGDHIMVAHNA 507

Query: 187 -----------------QRHRGYD----------RYRESQVVQLAYTHELPLVATNNSLF 219
                              H   D            +  ++  LA    + L   + +++
Sbjct: 508 SFDMGFLYVCYKKYGIDTVHATIDTLELARMLHPELKNHRLNTLAKKFGIELTQHHRAIY 567

Query: 220 LSEEDYEAHDVLMAVAHST---VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
            +E        L+  A         Q +    + D Y ++R    ++ +   E L+N  +
Sbjct: 568 DTEATSYLLTHLLKEADQKGILYHDQLNDYVGSGDAYKRSRPTHCTLLAQNDEGLKNLFK 627

Query: 277 IARRCSFILQVHAPILPR---------FIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
           +            P +PR          +     D  +  E  +  K++  +E       
Sbjct: 628 LVSASHINYFYRVPRIPRSLLQKHRKGLLVGSGCDKGEVFEAVM-QKSMEEVEKTAQFYD 686

Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
             + +  + Y   ++ E+  I          I+   ++ ++K  IP+
Sbjct: 687 YLEVHPKEVYSHLIEREM--IRDE--WNLEDIIRKLVKISRKLEIPL 729


>gi|293115337|ref|ZP_05790986.2| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
 gi|292810483|gb|EFF69688.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
          Length = 1476

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 165/909 (18%), Positives = 304/909 (33%), Gaps = 185/909 (20%)

Query: 94   PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG 153
                  ++L  +  G   L  L+S  +L     +  RI  S +++   +GLI+ +   +G
Sbjct: 639  AKTYHAIILADSEVGRVNLYRLISLSHLT-YFNRRPRIPKSEVEKY-RDGLILGSACEAG 696

Query: 154  PIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRY-----RESQVVQ 202
             + +A    +++    RL  +      + +  +R  +  QR               ++V 
Sbjct: 697  ELYQAILNGNTEEEIARLANYYDYLEIQPVGNNRFMIESQRLPQIKSEQDIIDINKKIVA 756

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            L      P+VAT +  FL+ ED     +   +         D        +L+   EM+ 
Sbjct: 757  LGEKFNKPVVATCDVHFLNPEDEVYRRI---IMKGQGFDDADN---QAPLFLRTTEEMLE 810

Query: 263  IFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             F  L E       + NT  IA  C +I  V     P  I           +  LR+   
Sbjct: 811  EFKYLGEDKAYEVVVTNTRLIADLCEYIEPVRPDKCPPVIP--------NCDQTLRDICY 862

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                              +    RL+ ELN I    +S  ++I    +  + ++   VG 
Sbjct: 863  NRAHEMYGPKL------PEIVESRLEKELNSIISNGYSVMYIIAQKLVWKSNEDGYLVG- 915

Query: 377  GRGSGAGSVTAYALTITDIDPLR------------------------------------- 399
             RGS   S  A    +T+++PL                                      
Sbjct: 916  SRGSVGSSFVATMSGVTEVNPLSPHYLCPECYYVDFDSDEVRKFAGGAGCDMPDKICPKC 975

Query: 400  --------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                    F + FE FL  +    PD D++F  + + +   YV+  +G  +  +  T G+
Sbjct: 976  GAKLKKEGFDIPFETFLGFNGDKEPDIDLNFSGEYQAKAHAYVEVIFGEGQTYKAGTVGT 1035

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            L  K     V +  +    +  R C                                  +
Sbjct: 1036 LADKTVYGYVKKYYEEK-GERKRSC---------------------------------EI 1061

Query: 512  LEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKA 566
              I     G+ R    H  GI++      +    P+         ++  T F+   I+  
Sbjct: 1062 NRIVNGGVGVKRSTGQHPGGIIVLPYGEEIHSFTPIQHPANDMTTNIVTTHFDYHSIDH- 1120

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
             L+K D LG    T+++   D        +D + IP D  E   L  +   L I   +  
Sbjct: 1121 NLLKLDILGHDDPTMIRMLQDLTK-----LDPTHIPLDSPEVMSLFQSTEALKINPEDIG 1175

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKET 685
            G +    G+     +  + ++    P    ++V      +G +  + +   LI+      
Sbjct: 1176 GTKLGCLGIPEFGTDFAMQMLIDTNPQHFSDLVRIAGLSHGTDVWLGNAQTLIEEGKATI 1235

Query: 686  QGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
               I  ++ +M       + +G S    + +R+  G K + E                + 
Sbjct: 1236 STAICTRDDIMIYLINMGIEAGTSFKIMESVRKGKGLKPEWE--------------ELMV 1281

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV--- 799
                 + +    K   Y F K+HAAAY +++++ A+ K  YP+E+ A+  ++  D+    
Sbjct: 1282 NAGVPDWYIWSCKKIKYMFPKAHAAAYVMMAWRIAYCKVFYPLEYYASYFSIRADDFSYR 1341

Query: 800  ------EKIKKFC------------------------QDARQFNIQIMPPS-VNTPCVDF 828
                  +K+ ++                         Q+        MP     +   +F
Sbjct: 1342 IMCFGKDKLDEYIEDYKRRNDSLTNKEQGQLKDMRIVQEMYARGFDFMPIDLYKSHSRNF 1401

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            ++ D R+     +I G+G T A  I EA+    F S+EDF  +    K +  V+   V  
Sbjct: 1402 QIVDGRLLPPFKSIDGLGETAADSIYEAAKCGKFLSVEDFIDKAKVPKTSAAVM---VEL 1458

Query: 889  GALDCFGYS 897
            G L     +
Sbjct: 1459 GILKGMSAN 1467



 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           +   +EK    V L +H+  S L+G   + +I+ +  +    AIAITD  ++ +  +   
Sbjct: 355 MDYAMEKR---VELHLHTKMSDLDGVSDIKDIIRQAMSWGHNAIAITDHGDVQAFTDAYH 411

Query: 61  KACAAGIQPIIGCQLDIDM 79
               +G +           
Sbjct: 412 MLRDSGNKDFKVIYGVEAY 430


>gi|239636258|ref|ZP_04677260.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            warneri L37603]
 gi|239597613|gb|EEQ80108.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            warneri L37603]
          Length = 1438

 Score =  439 bits (1130), Expect = e-120,   Method: Composition-based stats.
 Identities = 175/943 (18%), Positives = 325/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +   +  N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 582  VQQMKELGVTNHIDINQKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSES-LVTYYY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 641  RTPRIPRSLLNEY-REGLLVGTACDEGELFTAVMQRDQSEVEKIAKYYDFIEVQPPALYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          ++++   +  +P++AT N+ +L E D  A  +L+A      
Sbjct: 700  DLIDRELIRDTETLHEIYHRLIEAGKSANIPVIATGNAHYLYEHDAIARKILIASQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM+     L E  A E  V      +  ++   PI  +   
Sbjct: 760  LN----RSTLPEAHFRTTDEMLDELHFLGEEKAYELVVTNTNALADQIERVVPIKDKLYT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               D        E+R  + +  +    +         Q    RL+ EL+ I    FS  +
Sbjct: 816  PRMDGAN----EEIRELSYSNAKKLYGEDL------PQIVIDRLEKELDSIIGNGFSVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICTHCKTSEFFDDGS 924

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKKCPECGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    ++VDRL K              
Sbjct: 985  LFGEDKVFRAGTIGTVAEKTAFGFVKGYLNDQGIHKRGAEVDRLVK-------------- 1030

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1031 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1065

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQSSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1119

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            ET                +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 ETMKIFSSPESLGVTEEDILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1180 TDVWLG--------------NAQELIRAGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1224

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
                + K          +  +    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1225 TMEFVRKGR-----GLTDEMVEAMKENDVPDWYLDSCRKI-----KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1275 AVRIAYFKVHHPLYYYASYFTVRASDFDLITMIKDKTGIKNTVKDMYSRYMDLGKKEKDV 1334

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      DF +  + +     A+ G+G   A+ I+EA  
Sbjct: 1335 LTVLEIMNEMAHRGYRMQPISLEKSQAFDFIIEGDTLIPPFIAVPGLGENVAKRIVEARE 1394

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            + PF S ED   +     L+++V+E L   G+L      + QL
Sbjct: 1395 EGPFLSKEDLNKKA---GLSQKVIEYLDDLGSLPGL-PDKAQL 1433



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  ++   + + A     AIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTSMSQMDGIPNIGGYVAQAAEWGHQAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G +  +                     +V  V T  G   
Sbjct: 396 GMEGMLVDDGVPIAYKPTDRDLKDATYVVFDVET-TGLSN 434


>gi|328912208|gb|AEB63804.1| putative DNA polymerase yorL [Bacillus amyloliquefaciens LL3]
          Length = 1309

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 204/1022 (19%), Positives = 404/1022 (39%), Gaps = 135/1022 (13%)

Query: 15   QVHSSYS---LLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQKACAAGIQ 68
              H+  S   LL+   S+  +L          +AITD   L +   A++  ++    G  
Sbjct: 5    HCHTDKSNIRLLDSTNSVGELLKTAVQMNYKGLAITDHEILSAHLEAIKTVREMKKKGDM 64

Query: 69   P----IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            P    +I       +    ++ +  K+     P  ++L    +G+++L  L S+ +    
Sbjct: 65   PADFKLILGNEAYLVDSLEEVRDNYKSGQTKFPHFLMLAIDPKGHEQLRILSSQAWENSF 124

Query: 125  GKQS------VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA----------- 167
               +      V+  +  L       +I  T      ++                      
Sbjct: 125  YTGTMERVPTVKKDVEELLSKDPGHIIATTACLGSEVNINLLRIKECEESGDIQSIKQNK 184

Query: 168  ---EKRLLTFKKLF-GDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSE 222
                + +    K+F  D+ ++ LQ     ++     ++V +A  + L ++ T ++ FL  
Sbjct: 185  LKIHEFITWCVKVFGKDKFFIELQPALSEEQIYCNKKLVNIANGYGLKVIVTTDAHFLRP 244

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP-----EALENTVEI 277
            ED   H   +         +++        +++N  E+      L      EA+ENT+ I
Sbjct: 245  EDRAIHQAFLNAKDG----EREVDSFYEACFVQNVDEIHERMDYLDKEIIKEAIENTLLI 300

Query: 278  ARRCSFILQVHAPILPRFIEKECD-------------------DIQKEEENELRNKAVAG 318
                      H PI+P+    E +                   +  +E++  L      G
Sbjct: 301  GEMIEDYTIEHEPIIPKMALPEFELSHLFKPAYEKYKYIKLMAESDEEQDRYLLKLIEDG 360

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIA------RMKFSGYFLIVADFIQWAKKNNI 372
             + +L +  ++K        +R+D EL  +       +   S Y++ V + I     +  
Sbjct: 361  FKAKLMKKDMSKKELH-SILKRIDLELGELWEISEKLKQAMSSYYVTVREIINTIWDDEC 419

Query: 373  ----PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                 VG  RGS AG +  Y L IT I+P++++L   R ++  R  +PD DID    +R 
Sbjct: 420  GGDSLVGAARGSAAGFLVNYLLDITQINPMQYNLPHWRHIHKSRPDLPDIDIDTEGSKRS 479

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             +++ +++K+G +RV QI TFG+ ++K+AL+   R L +       L  +IP +     +
Sbjct: 480  RILKALRDKFGEKRVLQICTFGTEKSKSALQTACRGLGIDNDISQYLSGMIPFERGANWT 539

Query: 489  LQAIADDSR------FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            L      +        +E          L E   K+EGL    S+HAAG++I +   ++ 
Sbjct: 540  LSDCFFGNEELGRKPIKEFIREVEGYPNLKETCLKIEGLTNKRSSHAAGVLIFNDEYTKS 599

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGV------- 594
              M R  +    +TQFNM   E  G +K+D L ++ L  ++ +LD  +    +       
Sbjct: 600  NAMMRTPK-GAYITQFNMGDSEAMGSVKYDLLTIEGLDKIRVALDQLIEDNQIESQGTLK 658

Query: 595  -----KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                  +    + ++    + +      + +FQ ++    Q++  ++P  + +     SL
Sbjct: 659  RTYTKYLHPDTLEYNSKRIWEMAGEGEIMDLFQFDTEVGNQSVVKVKPKNLLETAVTNSL 718

Query: 650  YR------PGPIDNI--------VVYNNRKNGK---EKIVSIHPLIDPMLKETQGVIIYQ 692
             R        P+D            Y   +N     E++  +   +    +   G+   Q
Sbjct: 719  MRLMSEGEEQPVDTYVRFKKDIDHWYQEMRNYNLSSEEMDVLKKHLYKPEEGLYGIADTQ 778

Query: 693  EQVMQIAQL--LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            E VM ++    ++G+++ E++ LR+ + KKIK+ +D  K  F       G S+ +   ++
Sbjct: 779  ESVMMLSMDKEIAGFTIEESNKLRKGIAKKIKKMIDAIKTMFFEKGRSLGTSENLLKYVW 838

Query: 751  E-LLAKFADYGFNKSHAAAYAVISYQTAWMKTHY-PVEFLAASMTLEMDNVE-------- 800
            E    +   Y F+  H  AY++I+ Q   +   Y P+ +  A +T+    +E        
Sbjct: 839  EVQFKRQFGYSFSSLHTLAYSIIALQELNLNYKYNPLYWSTACLTVNSGGIESEEDQATK 898

Query: 801  --------KIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIYYSLAAIKGVGTTTA 850
                    K+     + R+  I++  P +N+    FK     N I + L  + G+G    
Sbjct: 899  KSAATNYGKVAAAIGNIRKRGIKVDLPDINSANFGFKADTESNSIIFGLKGMNGIGDDVV 958

Query: 851  RHIMEASADKPFDSLEDFCSRV-DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              I+    ++P+   +DF  R+  S  L +  +  L+  G  D FG  R ++++S  ++ 
Sbjct: 959  HQII---VNRPYSDFDDFIERMFKSSILKKGQMIQLIKGGCFDSFG-DRQKIMKSFISLI 1014

Query: 910  KY 911
              
Sbjct: 1015 SE 1016


>gi|330685683|gb|EGG97324.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis VCU121]
          Length = 1438

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 176/943 (18%), Positives = 326/943 (34%), Gaps = 199/943 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +   +  N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 582  VQQMKELGVTNHIDINQKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSES-LVTYYY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 641  RTPRIPRSLLNEY-REGLLVGTACDEGELFTAVMQRDQSEVEKIAKYYDFIEVQPPALYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          ++++   +  +P++AT N+ +L E D  A  +L+A      
Sbjct: 700  DLIDRELIRDTETLHEIYHRLIEAGKSANIPVIATGNAHYLYEHDAIARKILIASQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM+     L E  A E  V      +  ++   PI  +   
Sbjct: 760  LN----RSTLPEAHFRTTDEMLDELHFLGEEKAYELVVTNTNALADRIERVVPIKDKLYT 815

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               D        E+R  + +  +    +         Q    RL+ EL+ I    FS  +
Sbjct: 816  PRMDGAN----EEIRELSYSNAKKLYGEDL------PQIVIDRLEKELDSIIGNGFSVIY 865

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 866  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCTHCKTSEFFDDGS 924

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + +     Y + 
Sbjct: 925  VGSGFDLPDKKCPECGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 984

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    ++VDRL K              
Sbjct: 985  LFGEDKVFRAGTIGTVAEKTAFGFVKGYLNDQGIHKRGAEVDRLVK-------------- 1030

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+ R    H  GI++      +    P+    
Sbjct: 1031 -------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPA 1065

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1066 DDQSSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG-----IDPKTIPVDDK 1119

Query: 607  ETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            ET                +L   GT G+ +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1120 ETMKIFSSPESLGVTEEDILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG 1179

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                 +   LI   + +   VI  ++ +M +  + +G   S A  
Sbjct: 1180 TDVWLG--------------NAQELIRAGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFK 1224

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
                + K          +  +    +N +      +  ++      Y F K+HAAAY ++
Sbjct: 1225 TMEFVRKGR-----GLTDEMVEAMKENDVPDWYLDSCRKI-----KYMFPKAHAAAYVLM 1274

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------------- 800
            + + A+ K H+P+ + A+  T+   + +                                
Sbjct: 1275 AVRIAYFKVHHPLYYYASYFTVRASDFDLITMIKDKTGIKNTVKDMYSRYMDLGKKEKDV 1334

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              + +   +      ++ P S+      DF + D+ +     A+ G+G   A+ I+EA  
Sbjct: 1335 LTVLEIMNEMAHRGYRMQPISLEKSQAFDFIIEDDSLIPPFIAVPGLGENVAKRIVEARE 1394

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            + PF S ED   +     L+++V+E L   G+L      + QL
Sbjct: 1395 EGPFLSKEDLNKKA---GLSQKVIEYLDDLGSLPGL-PDKAQL 1433



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  ++   + + A     AIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTSMSQMDGIPNIGGYVAQAAEWGHQAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G +  +                     +V  V T  G   
Sbjct: 396 GMEGMLVDDGVPIAYKPTDRDLKDATYVVFDVET-TGLSN 434


>gi|225388986|ref|ZP_03758710.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme DSM
            15981]
 gi|225044966|gb|EEG55212.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme DSM
            15981]
          Length = 1561

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 166/896 (18%), Positives = 303/896 (33%), Gaps = 172/896 (19%)

Query: 87   NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146
            N+          +++L     G   L  LVS  +L     +  RI  S L +   EGL++
Sbjct: 718  NEDTIRKLPTYHVIILAKNDIGRINLYRLVSWSHLT-YYARRPRIPKSVLSQY-REGLLI 775

Query: 147  LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR----------YR 196
             +   +G + +A    +      RL+ F      +   N       ++            
Sbjct: 776  GSACEAGELYQAMLRGAPASEVARLVHFYDYLEIQPLGNNSFMLRDEKSTVKTEEDLKEI 835

Query: 197  ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKN 256
              ++V L      P+ AT +  FL  +D     ++MA                   YL+ 
Sbjct: 836  NRRIVNLGEHFGKPVCATCDVHFLDPQDEVYRRIIMAGQGFKDSDD------QAPLYLRT 889

Query: 257  RSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
              EM++ F  L   +A E  V   R+ + + +  +P+ P        D  K       ++
Sbjct: 890  TEEMLAEFDYLGPDKAQEVVVTNTRKIADMCEKISPVRPDKCPPVIPDSDKTLTKICYDR 949

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
            A       L           +    RL+ EL+ I    F+  ++I    +  + ++   V
Sbjct: 950  AHEMYGEDL----------PKIVVDRLERELHSIITNGFAVMYIIAQKLVWKSNEDGYLV 999

Query: 375  GPGRGSGAGSVTAYALTITDIDPLR----------------------------------- 399
            G  RGS   S  A    IT+++PL                                    
Sbjct: 1000 G-SRGSVGSSFVATMSGITEVNPLSPHYHCPKCRYYDFDSEEVKKFSGMAGCDMPDKACP 1058

Query: 400  ----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                      F + FE FL       PD D++F  + + +   Y +  +G  +  +  T 
Sbjct: 1059 VCGTPLEKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHDYTEVIFGKGQTFRAGTI 1118

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G+L  K A   V +                                   R +R  +  ++
Sbjct: 1119 GTLADKTAYGYVKKYY-------------------------------EERGSRKRNCEIN 1147

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIE 564
            R++   Q   G+ R    H  GI++      +    P+             T F+   I+
Sbjct: 1148 RIV---QGCVGVRRTTGQHPGGIIVLPLGEEIYSFTPVQHPANDMTTSTVTTHFDYHSID 1204

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
               L+K D LG    T+++   D      V      IP D  E   L  +   LGI   +
Sbjct: 1205 H-NLLKLDILGHDDPTMIRMLQDLTGIDPV----KDIPLDSREVMSLFQSTAALGITPDD 1259

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLK 683
              G      G+     +  + ++   +P    ++V      +G +  + +   LI     
Sbjct: 1260 IGGCPLGALGVPEFGTDFAMQMLIDTKPKYFSDLVRIAGLAHGTDVWLGNAQTLIQEGKA 1319

Query: 684  ETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
              Q  I  ++ +M          G S +  + +R+  G K         + +I+  + +G
Sbjct: 1320 TIQTAICTRDDIMIYLIAQGMDEGLSFTIMESVRKGKGLK---------DDWITEMTAHG 1370

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE----- 795
            + +      +    K   Y F K+HAAAY +++++ A+ K  YP+ + AA  ++      
Sbjct: 1371 VPE-----WYIWSCKKIKYMFPKAHAAAYVMMAWRIAYCKIFYPLAYYAAFFSIRASAFS 1425

Query: 796  ----MDNVEKIKKF------------------------CQDARQFNIQIMPPSV-NTPCV 826
                    +K++ +                         Q+        MP  +      
Sbjct: 1426 YEIMCQGRDKLEYYLADYKKRVDTLSKKEQDTLRDMRIVQEMYARGFDFMPLDIYRAKAR 1485

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
            DF+V D +I  SL++I G+G   A  +++A  D  F S+EDF +R         ++
Sbjct: 1486 DFQVIDGKIMPSLSSIDGLGDKAAEAVVDAVKDGAFLSIEDFSNRSKVNGTICTLM 1541



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           V L  H+  S ++G   + +I+ +       AIA+TD   + S  + +  
Sbjct: 452 VELHCHTKMSDMDGVSEVKDIIKRAKKWGMSAIAVTDHGCVQSFPDANHA 501


>gi|288556947|ref|YP_003428882.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4]
 gi|288548107|gb|ADC51990.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4]
          Length = 1432

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 176/915 (19%), Positives = 318/915 (34%), Gaps = 193/915 (21%)

Query: 87   NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146
             QG           +L  T EG + L +LVS  ++ +   ++ RI  S LQ+   +GL++
Sbjct: 597  GQGNFTRQRPSHCTILAQTQEGLKNLYQLVSMSHV-EYFFRTPRIPRSQLQK-HRKGLLI 654

Query: 147  LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-------FGDRLYVNLQRHRGYDRYRESQ 199
             T    G +       S +  E+    +  L       +   +   L ++    +   S 
Sbjct: 655  GTACDKGEVFEGMMQKSPEEVEEIAKFYDYLEIQPLENYQHLIEKELVKNDESLKEIVSN 714

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V+L    + P+VAT N+ +L++ED     +L+A       +     +  P  + K   E
Sbjct: 715  IVELGEKLDKPVVATGNAHYLNKEDAIYRKILIASQGG---ANPLNKQTLPPVHFKTTDE 771

Query: 260  MVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            M+  F+ L +       +ENT ++A     I  +   +    IE   D+I+  E +  R 
Sbjct: 772  MIDAFAFLGDDKAKKLVVENTQKVADLVEEIHPIPDQLYTPKIEGADDEIR--EMSYSRA 829

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            +++ G                +    R++ EL  I    F+  +LI    ++ +  +   
Sbjct: 830  RSIYG------------DDLPEIVEARIEKELKSIIGHGFAVIYLISQKLVKKSLIDGYL 877

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRF--------------------------------- 400
            VG  RGS   S  A    IT+++PL                                   
Sbjct: 878  VG-SRGSVGSSFVATMTEITEVNPLPPHYVCPNCQHSYFFNDGSVGSGFDLPDKDCPECG 936

Query: 401  --------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
                     + FE FL      +PD D++F  + +     Y +  +G E V +  T G++
Sbjct: 937  TAYVKDGQDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHHYTKELFGEEYVYRAGTIGTV 996

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
              K A   V                                      +  +    +DRL+
Sbjct: 997  AEKTAYGYVKGYQGDH-------------------------------DLHMRGAEIDRLV 1025

Query: 513  EISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAG 567
                   G+ R +  H  GI++      +    P+     D  ++   T F+   I    
Sbjct: 1026 S---GCTGVKRTSGQHPGGIIVVPDYMDIYDFTPIQFPADDKTAEWKTTHFDFHSIHD-N 1081

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY--------------HLLT 613
            L+K D LG    T+++   D        +D   IP DD E                 +L 
Sbjct: 1082 LLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPEVMKIFSGPDVLGVTEDQILC 1136

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GTLGI +  +  +RQ LE  +P    +++ +  L       ++ + N           
Sbjct: 1137 KTGTLGIPEFGTRFVRQMLEETKPSTFSELVQISGLSHGT---DVWLNNAN--------- 1184

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
               LI     E + VI  ++ +M +  +  G   S A  +   + K         +  ++
Sbjct: 1185 --ELIYNGTCELKDVIGCRDDIM-VYLIYKGLEPSLAFKIMEFVRKGK-----GLQPEWV 1236

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
                K+ +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ + A+  T
Sbjct: 1237 EEMKKHDVPDWYIGSCTKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHPILYYASYFT 1291

Query: 794  LEMDNVE---------KIKKFCQDARQFNIQIMPPS------------------------ 820
            +  D+ +          IK   ++     +   P                          
Sbjct: 1292 VRADDFDLDTMIKGSTAIKAKIEEINAKGLDASPKEKAVLTVLELALEMCERGFSFKKVD 1351

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F V    +     A+ GVGT  A +I++A     F S ED   +    K   
Sbjct: 1352 LYESSATEFIVDGMSLLPPFNAMTGVGTNAALNIVKAREGGEFLSKEDLQQKARLTKTVL 1411

Query: 880  RVLESL-VFAGALDC 893
              L+     AG  D 
Sbjct: 1412 EHLDDHGCLAGMPDS 1426



 Score = 80.8 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 30/62 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+S S ++G  S    +++ A    PAIAITD   + S  E        GI+ + 
Sbjct: 332 VELHLHTSMSQMDGMTSAGKYVEQAAKWGHPAIAITDHGVVQSFPEAYGAGKKHGIKVLY 391

Query: 72  GC 73
           G 
Sbjct: 392 GV 393


>gi|150018035|ref|YP_001310289.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
            8052]
 gi|149904500|gb|ABR35333.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
            8052]
          Length = 1446

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 172/947 (18%), Positives = 315/947 (33%), Gaps = 207/947 (21%)

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            +K    G Q +    L    ++  K+              ++L     G + L +LVS  
Sbjct: 583  EKLKERGAQTLSDIDLYAADEEAKKVA----YKKVKTHHAIILAKNYVGLKNLYKLVSYS 638

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +L D   +  RI  S  ++  +EGLI+ +  S G + +A      +   + +  F     
Sbjct: 639  HL-DYFYKKPRILKSMFKKY-SEGLIIGSACSEGELYQAILLGKPEEQIEEIANFYD--- 693

Query: 180  DRLYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
               Y+ +Q     D              +    ++V+LA     P+VAT +  FL  ED 
Sbjct: 694  ---YLEIQPLGNNDYLVRQEQVPSKEYLKEINKKIVELAERLGKPVVATGDVHFLDPEDE 750

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSF 283
                +L A                   YL+   EM+  FS L   +A E  V      + 
Sbjct: 751  IYRRILEAGQGFKDADN------QAPLYLRTTEEMLDEFSYLGRTKAYEVVVTNTNIVAD 804

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            + +  +PI P       +  ++  ++    KA            +      +  + RLD 
Sbjct: 805  MCEQISPISPEKCPPHIEGCEQTIKDIAYEKAHE----------LYGDPLPEIVQARLDK 854

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--- 400
            EL+ I +  FS  ++I    +  + ++   VG  RGS   S  A    IT+++ L     
Sbjct: 855  ELDSIIKNGFSVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFVANMTGITEVNALPPHYR 913

Query: 401  -------------------------------------SLLFERFLNPDRMSMPDFDIDFC 423
                                                  + FE FL  +    PD D++F 
Sbjct: 914  CPKCKYSDFEDYGVLNGFDLPDKVCPVCGENLYKDGIDIPFETFLGFNGDKEPDIDLNFS 973

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + + +  RY +  +G     +  T G++  K A   V +  +     +++         
Sbjct: 974  GEYQAKAHRYTEVIFGKGTTFKAGTIGTIAEKTAFGYVKKYYEEKNITINK--------- 1024

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQ 541
                                        + IS    G+ R    H  GI++    R + +
Sbjct: 1025 -------------------------AETIRISVGCTGIKRTTGQHPGGIIVVPKGREIFE 1059

Query: 542  LVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
              P+     D  SD+  T F+   I++  L+K D LG    T+++   D        VD 
Sbjct: 1060 FCPVQHPADDPNSDIITTHFDYHSIDQ-NLLKLDILGHDDPTVIRMLQDITG-----VDP 1113

Query: 599  SLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDII 644
              IP DD +T  L  +               GT GI +  +  +R  L   +P    D++
Sbjct: 1114 HEIPMDDKDTMSLFFSTKALGVTPNQINSEVGTFGIPEFGTKFVRGMLVDTKPKTFSDLL 1173

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS- 703
             +  L     +      +   NG             ++      +  ++ +M        
Sbjct: 1174 CISGLSHGTDVWLGNAKDLIDNG-------------VITSISDAVCTRDDIMVYLIRKGL 1220

Query: 704  --GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                +    + +R+    K  +  +           +  + +      +    K   Y F
Sbjct: 1221 PPNTAFKIMETVRKGKALKEPKFPE----------YEAMMREHDVPEWYIESCKKIKYMF 1270

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQF 812
             K+HAAAY +++++ AW K H P  + A   T+     +         K+K   Q+ +  
Sbjct: 1271 PKAHAAAYVMMAFRIAWFKVHIPQAYYATYFTIRAKAFDAEFMIFGKEKVKAKMQEIQAL 1330

Query: 813  NIQIMPPS-------------------------VNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              +  P                             +    F++ ++ I   L +I G+G 
Sbjct: 1331 GNEAGPKDKDMYDDLEIVLEMYERGFKFLPIDLYKSSATKFQLEEDGIRPPLNSIAGMGN 1390

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              A  I  A+ +K F+S++D   R    K+    +E L     L+  
Sbjct: 1391 VAAEGIASAAKEKEFNSVDDVKKR---SKIGNAAIELLRKFDCLNGL 1434



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 39/91 (42%), Gaps = 2/91 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQP 69
           V L +H+  S ++   S ++++ +  +    +IAITD   + S  E  +        ++ 
Sbjct: 336 VELHMHTQMSQMDAMSSASDLIKRAMSWGMKSIAITDHGVVQSFPEAHKLLGRDNPDMKV 395

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           I G +  +       +TN  +    TV  ++
Sbjct: 396 IYGVEAYLAPDKKPSVTNVREESIDTVYCVL 426


>gi|226223921|ref|YP_002758028.1| DNA polymerase III (alpha subunit) [Listeria monocytogenes Clip81459]
 gi|225876383|emb|CAS05092.1| Putative DNA polymerase III (alpha subunit) [Listeria monocytogenes
            serotype 4b str. CLIP 80459]
          Length = 1444

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 176/935 (18%), Positives = 305/935 (32%), Gaps = 194/935 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            I+                   +G       P    +   TA G + L +L++   + +  
Sbjct: 588  IKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYF 646

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLF 178
             +  RI  S L+++  EGLI+ T  S G +  A      Q AEK    +       K ++
Sbjct: 647  YRVPRIPRSQLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVY 705

Query: 179  GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               +   L R           +V++      P+VAT N  +    D     +L+      
Sbjct: 706  APLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILIHSQGG- 764

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFI 296
              +        PD + +   EM+  F+ L E  A E  V  A      ++   PI     
Sbjct: 765  --ANPLNRAELPDVHFRTTDEMLKEFAFLGEEKAKEIVVTNANLVVDWMEDLKPIKDELY 822

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              + D      E+E+RN + A       +         +    RL+ EL  I    F+  
Sbjct: 823  TPKIDGA----EDEVRNMSYAMAHQLYGEKL------PEIVEARLEKELKSIIGHGFAVI 872

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------- 403
            +LI    ++ +  +   VG  RGS   S  A    IT+++PL    L             
Sbjct: 873  YLISHKLVKKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDG 931

Query: 404  ----------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                        FE FL      +PD D++F  D +     Y +
Sbjct: 932  SVGSGFDLPDKDCPHCGTSYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTK 991

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G + V +  T G++  K A   V R  +   +   R                     
Sbjct: 992  EIFGEDYVFRAGTIGTVAEKTAFGYV-RNYERDMNMTIRGA------------------- 1031

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVR 550
                        +DRL+       G+ R    H  GI++      +    P+        
Sbjct: 1032 -----------EIDRLVA---GCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATD 1077

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
            S+   T F+   I    ++K D LG    T ++   D        +D   IP DD +   
Sbjct: 1078 SEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPDVMK 1131

Query: 611  LL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            L               +  GTLGI +  +  +RQ LE  +P    +++ +  L     + 
Sbjct: 1132 LFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHGTDVW 1191

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVL 713
                            +   LI     E   VI  ++ +M       L S  +    + +
Sbjct: 1192 LG--------------NAEELIKNKTCELPDVIGCRDDIMVFLIYQGLESSLAFKIMESV 1237

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+   K + EEM++             +        +    K   Y F K+HAAAY +++
Sbjct: 1238 RKG--KGLTEEMEEA------------MMANKVPLWYIESCKKIKYMFPKAHAAAYVLMA 1283

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVE--------------------------------- 800
             + A+ K HYP+ F A   T+  D+ +                                 
Sbjct: 1284 VRIAYFKVHYPLYFYATYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLL 1343

Query: 801  KIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
             + +   +               +   +F +  + +     AI  +GT  A+ I+ A  +
Sbjct: 1344 TVLEIANEMLARGFHFQKVDLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAAREN 1403

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              F S ED   R    K+++ +++ +   G L+  
Sbjct: 1404 GEFLSKEDLQQR---GKVSKTIIQYMDDQGCLEGL 1435



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401


>gi|254932365|ref|ZP_05265724.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|293583921|gb|EFF95953.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|328475042|gb|EGF45830.1| DNA polymerase III PolC [Listeria monocytogenes 220]
          Length = 1444

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 176/935 (18%), Positives = 305/935 (32%), Gaps = 194/935 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            I+                   +G       P    +   TA G + L +L++   + +  
Sbjct: 588  IKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYF 646

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLF 178
             +  RI  S L+++  EGLI+ T  S G +  A      Q AEK    +       K ++
Sbjct: 647  YRVPRIPRSQLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVY 705

Query: 179  GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               +   L R           +V++      P+VAT N  +    D     +L+      
Sbjct: 706  APLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILIHSQGG- 764

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFI 296
              +        PD + +   EM+  F+ L E  A E  V  A      ++   PI     
Sbjct: 765  --ANPLNRAELPDVHFRTTDEMLKEFAFLGEEKAKEIVVTNANLVVDWMEDLKPIKDELY 822

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              + D      E+E+RN + A       +         +    RL+ EL  I    F+  
Sbjct: 823  TPKIDGA----EDEVRNMSYAMAHQLYGEKL------PEIVEARLEKELKSIIGHGFAVI 872

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------- 403
            +LI    ++ +  +   VG  RGS   S  A    IT+++PL    L             
Sbjct: 873  YLISHKLVKKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDG 931

Query: 404  ----------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                        FE FL      +PD D++F  D +     Y +
Sbjct: 932  SVGSGFDLPDKDCPHCGTPYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTK 991

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G + V +  T G++  K A   V R  +   +   R                     
Sbjct: 992  EIFGEDYVFRAGTIGTVAEKTAFGYV-RNYERDMNMTIRGA------------------- 1031

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVR 550
                        +DRL+       G+ R    H  GI++      +    P+        
Sbjct: 1032 -----------EIDRLVA---GCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATD 1077

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
            S+   T F+   I    ++K D LG    T ++   D        +D   IP DD +   
Sbjct: 1078 SEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPDVMK 1131

Query: 611  LL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            L               +  GTLGI +  +  +RQ LE  +P    +++ +  L     + 
Sbjct: 1132 LFGSTESLGVKSADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHGTDVW 1191

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVL 713
                            +   LI     E   VI  ++ +M       L S  +    + +
Sbjct: 1192 LG--------------NAEELIKNKTCELPDVIGCRDDIMVFLIYQGLESSLAFKIMESV 1237

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+   K + EEM++             +        +    K   Y F K+HAAAY +++
Sbjct: 1238 RKG--KGLTEEMEEA------------MMANKVPLWYIESCKKIKYMFPKAHAAAYVLMA 1283

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVE--------------------------------- 800
             + A+ K HYP+ F A   T+  D+ +                                 
Sbjct: 1284 VRIAYFKVHYPLYFYATYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLL 1343

Query: 801  KIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
             + +   +               +   +F +  + +     AI  +GT  A+ I+ A  +
Sbjct: 1344 TVLEIANEMLARGFHFQKVDLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAAREN 1403

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              F S ED   R    K+++ +++ +   G L+  
Sbjct: 1404 GEFLSKEDLQQR---GKVSKTIIQYMDDQGCLEGL 1435



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401


>gi|46907546|ref|YP_013935.1| DNA polymerase III PolC [Listeria monocytogenes str. 4b F2365]
 gi|47093944|ref|ZP_00231681.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
            monocytogenes str. 4b H7858]
 gi|254824621|ref|ZP_05229622.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|300765440|ref|ZP_07075422.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            monocytogenes FSL N1-017]
 gi|67460321|sp|Q720A2|DPO3_LISMF RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|46880814|gb|AAT04112.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
            monocytogenes serotype 4b str. F2365]
 gi|47017682|gb|EAL08478.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
            monocytogenes str. 4b H7858]
 gi|293593859|gb|EFG01620.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|300513877|gb|EFK40942.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            monocytogenes FSL N1-017]
 gi|328468603|gb|EGF39603.1| DNA polymerase III PolC [Listeria monocytogenes 1816]
          Length = 1444

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 176/935 (18%), Positives = 305/935 (32%), Gaps = 194/935 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            I+                   +G       P    +   TA G + L +L++   + +  
Sbjct: 588  IKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYF 646

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLF 178
             +  RI  S L+++  EGLI+ T  S G +  A      Q AEK    +       K ++
Sbjct: 647  YRVPRIPRSQLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVY 705

Query: 179  GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               +   L R           +V++      P+VAT N  +    D     +L+      
Sbjct: 706  APLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILIHSQGG- 764

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFI 296
              +        PD + +   EM+  F+ L E  A E  V  A      ++   PI     
Sbjct: 765  --ANPLNRAELPDVHFRTTDEMLKEFAFLGEEKAKEIVVTNANLVVDWMEDLKPIKDELY 822

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              + D      E+E+RN + A       +         +    RL+ EL  I    F+  
Sbjct: 823  TPKIDGA----EDEVRNMSYAMAHQLYGEKL------PEIVEARLEKELKSIIGHGFAVI 872

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------- 403
            +LI    ++ +  +   VG  RGS   S  A    IT+++PL    L             
Sbjct: 873  YLISHKLVKKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDG 931

Query: 404  ----------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                        FE FL      +PD D++F  D +     Y +
Sbjct: 932  SVGSGFDLPDKDCPHCGTPYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTK 991

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G + V +  T G++  K A   V R  +   +   R                     
Sbjct: 992  EIFGEDYVFRAGTIGTVAEKTAFGYV-RNYERDMNMTIRGA------------------- 1031

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVR 550
                        +DRL+       G+ R    H  GI++      +    P+        
Sbjct: 1032 -----------EIDRLVA---GCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATD 1077

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
            S+   T F+   I    ++K D LG    T ++   D        +D   IP DD +   
Sbjct: 1078 SEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPDVMK 1131

Query: 611  LL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            L               +  GTLGI +  +  +RQ LE  +P    +++ +  L     + 
Sbjct: 1132 LFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHGTDVW 1191

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVL 713
                            +   LI     E   VI  ++ +M       L S  +    + +
Sbjct: 1192 LG--------------NAEELIKNKTCELPDVIGCRDDIMVFLIYQGLESSLAFKIMESV 1237

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+   K + EEM++             +        +    K   Y F K+HAAAY +++
Sbjct: 1238 RKG--KGLTEEMEEA------------MMANKVPLWYIESCKKIKYMFPKAHAAAYVLMA 1283

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVE--------------------------------- 800
             + A+ K HYP+ F A   T+  D+ +                                 
Sbjct: 1284 VRIAYFKVHYPLYFYATYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLL 1343

Query: 801  KIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
             + +   +               +   +F +  + +     AI  +GT  A+ I+ A  +
Sbjct: 1344 TVLEIANEMLARGFHFQKVDLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAAREN 1403

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              F S ED   R    K+++ +++ +   G L+  
Sbjct: 1404 GEFLSKEDLQQR---GKVSKTIIQYMDDQGCLEGL 1435



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401


>gi|255523926|ref|ZP_05390889.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|296185167|ref|ZP_06853577.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            carboxidivorans P7]
 gi|255512357|gb|EET88634.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|296050001|gb|EFG89425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            carboxidivorans P7]
          Length = 1449

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 169/917 (18%), Positives = 309/917 (33%), Gaps = 191/917 (20%)

Query: 84   KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG 143
            +   + +         ++L     G + L +LVS  +L D   +  RI  S  ++  +EG
Sbjct: 606  EAAKKEEYKKLKTYHAIILAKDYVGLKNLYKLVSYSHL-DYFYKKPRILKSMYKKY-SEG 663

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRL------LTFKKLFGDRLYV--NLQRHRGYDRY 195
            LI+ +  S G + +A     S    + +      L  + L  +   V      ++ Y + 
Sbjct: 664  LILGSACSEGELYQAILLGKSDEQIEAIAQDYDYLEIQPLGNNDYLVRQEQVPNKEYLKK 723

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
               +++ LA     P+VAT +  F+  ED     +L A                   YL+
Sbjct: 724  INKKIIALAEKFNKPVVATGDVHFMDPEDEIYRRILEAGQGFKDADN------QAPLYLR 777

Query: 256  NRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
               EM+  FS L E  A E  V    + + + +  +PI P       D  ++  ++    
Sbjct: 778  TTEEMLQEFSYLGEEKAYEVVVTNTNKIADMCEQISPISPEKCPPHIDGCEQTIKDIAYE 837

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            KA            +      +  + RLD EL  I +  FS  ++I    +  +  +   
Sbjct: 838  KAHE----------LYGDPLPEIVQTRLDKELESIIKNGFSVMYIIAQKLVWKSNDDGYL 887

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRF--------------------------------- 400
            VG  RGS   S  A    IT+++ L                                   
Sbjct: 888  VG-SRGSVGSSFVANMTGITEVNALPPHYRCPSCKHSDFSDYGVKNGFDLPDKVCPVCGE 946

Query: 401  -------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
                    + FE FL  +    PD D++F  + + +  +Y +  +G     +  T G++ 
Sbjct: 947  KLVKDGIDIPFETFLGFNGDKEPDIDLNFSGEYQAKAHKYTEVIFGKGTTFKAGTIGTIA 1006

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             K A   V +             K +P + A                          +  
Sbjct: 1007 EKTAFGYVKKYYDE---------KNVPVNKA-------------------------EITR 1032

Query: 514  ISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGL 568
            I+    G+ R    H  GI++    R + +  P+     D  SD+  T F+   I++  L
Sbjct: 1033 IAVGCTGIKRTTGQHPGGIIVVPKGREIFEFCPVQHPADDSNSDIITTHFDYHSIDQ-NL 1091

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK------------- 615
            +K D LG    T+++   D        V+   IP DD ET  + ++              
Sbjct: 1092 LKLDILGHDDPTVIRMLQDITG-----VNPHEIPMDDKETMSIFSSTEALGVTPEQINSK 1146

Query: 616  -GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
             GT GI +  +  +R  L    P    D+I +  L     +                 + 
Sbjct: 1147 VGTFGIPEFGTKFVRGMLLDTMPKAFSDLICISGLSHGTDVWLG--------------NA 1192

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LID  +      +  ++ +M            +    +++R+    K   +  + +  
Sbjct: 1193 KDLIDQGVVTLSEAVCTRDDIMIYLIKKGLPNNTAFKIMELVRKGKALKDPAKWAEYEAL 1252

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
                     + +      +    +   Y F K+HAAAY +++++ AW K H P  + AA 
Sbjct: 1253 ---------MREHDVPEWYIDSCRKIKYMFPKAHAAAYVMMAFRIAWFKVHIPKAYYAAY 1303

Query: 792  MTLEMDNVE---------KIKKFCQDARQFNIQIMPPS---------------------- 820
             T+   + +         K+++  ++      Q  P                        
Sbjct: 1304 FTIRAKSFDSEFMIFGKEKVREKMKEIEMMGNQATPKDKDMYDDLEIVLEMYERGFKFLP 1363

Query: 821  ---VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
                 +    F V +  +   + +I G+G   A  I  A+ ++ F S+ED   R    K+
Sbjct: 1364 IDLYKSNATKFIVEEEGLRPPINSISGMGNVAAEGIYNAAKEETFSSIEDVKKR---SKI 1420

Query: 878  NRRVLESLVFAGALDCF 894
                +E L   G L   
Sbjct: 1421 GNSAIELLKKFGCLKGL 1437



 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQP 69
           V L +H+  S ++   S  +++ +  +    +IAITD   + +  E  +        ++ 
Sbjct: 339 VELHMHTQMSQMDAMTSATDLIKRAMSWGMKSIAITDHGVVQAFPEAHKLLGRDNPDMKI 398

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           I G +  +       +TN       T   ++
Sbjct: 399 IYGVEAYLAPDKKPSVTNIKGQSIDTTYCVL 429


>gi|331701344|ref|YP_004398303.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929]
 gi|329128687|gb|AEB73240.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929]
          Length = 1439

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 165/921 (17%), Positives = 311/921 (33%), Gaps = 185/921 (20%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
               Q N  MT+            +LL  T  G + + ++VS   +     +  R+  + L
Sbjct: 591  YHDQLNDHMTDNDAYRHARPSHAILLAKTQAGLKNMFKIVSLSNVK-YFYRVPRVPRTQL 649

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NLQRH 189
            ++   +GLI+ +  SSG +  A        A ++   +   ++   R Y       L   
Sbjct: 650  EKY-RDGLIVGSACSSGEVFTAMMQKGLDEARQKAGFYDYLEVQPKRAYAPLIESGLIAD 708

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                    + +V+L    + P+VAT +  +L+ +DY    +L+        +     +  
Sbjct: 709  DENLEQILTNMVKLGDELDKPVVATGDVHYLNPQDYIYRKILINSQGG---ANPLNRQEL 765

Query: 250  PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            PD +     EM+S F+ L   +A E  V+   + +  ++   P+  +      +  + E 
Sbjct: 766  PDLHFLTTDEMLSDFNFLGPEKAEEIVVDNTNQIADEIEDVHPLKDKLYTPRMEGAEDEI 825

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++   + A A     L           +    RLD EL  I    FS  +LI    +  +
Sbjct: 826  KSRTMDTAHAWYGDPL----------PKIVSDRLDKELKSIIGNGFSVIYLIAQRLVAKS 875

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
             K+   VG  RGS   S+ A    IT+++PL                             
Sbjct: 876  NKDGYLVG-SRGSVGSSLVATLTGITEVNPLPPHYRCPNCQHTEFFTKGEYSSGYDLPHK 934

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                          ++ FE FL      +PD D++F  D +     Y +  +G + V + 
Sbjct: 935  KCPKCGTMMIGDGHNIPFETFLGFTGNKVPDIDLNFSGDYQPIAHNYTKVLFGEKNVFRA 994

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V +A +    +V R               QA  D            
Sbjct: 995  GTIGTVADKTAYGYV-KAYERDKGEVYR---------------QAEED------------ 1026

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRSD---LPVTQFNMK 561
                   +++   G+ R    H AGI++      +    P+             T F+  
Sbjct: 1027 ------RLAKGATGVKRTTGQHPAGIIVVPDYMDIYDFTPIQYPADDQDAAWQTTHFDFH 1080

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------- 612
             I    ++K D LG    T+++   D        +D   IP DD     +          
Sbjct: 1081 SIHD-NILKIDILGHDDPTMIRMLQDL-----SGIDPKTIPMDDPGVMSIFSSPKILGVT 1134

Query: 613  -----TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
                 +  GTLG+ +  +  +R  LE   P    +++ +  L     +         KNG
Sbjct: 1135 EDQIQSKTGTLGVPEFGTRFVRGMLEQTHPSNYSELLQISGLSHGTDVWMGNADELIKNG 1194

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
               I ++    D ++ +     +  E           + + E+    R +    + EM  
Sbjct: 1195 TATIANVIGCRDNIMTDLINWGLDSEL---------SFQIMESVRHGRGIPDDWQAEM-- 1243

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
                           K    + +        Y F ++HAAAY +++ + A+ K ++P+ +
Sbjct: 1244 --------------KKAKIPDWYIQSCLKIKYMFPRAHAAAYILMALRIAYFKVYFPMVY 1289

Query: 788  LAASMTLEMDNVEKIK---------------------------------KFCQDARQFNI 814
             A+  ++  D+ + +                                  +   +  +   
Sbjct: 1290 YASYFSVRADDFDIVSMCRGKEAVKNAMRMINDKGMEASTKEKNLLTVLELANEMLERGY 1349

Query: 815  QIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                  ++      + +  + +     ++ G+G   A+ I+ A  DKPF S ED   R  
Sbjct: 1350 HFQMVDLDKSDASQWLIDGDTLIAPFNSVPGLGLNVAKQIVAAREDKPFISKEDLAKRGK 1409

Query: 874  SKKLNRRVL-ESLVFAGALDC 893
              K     + E+ V AG  D 
Sbjct: 1410 VSKTLIDFMTENNVLAGLPDE 1430



 Score = 65.0 bits (157), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   ++ +   +     Q A+AITD   +    +         I+ + 
Sbjct: 334 VELHLHTTMSQMDATNNIADFAKQAKHFGQKALAITDHAGVQGFPDAFHAGQKNDIKMLY 393

Query: 72  GC 73
           G 
Sbjct: 394 GV 395


>gi|226313025|ref|YP_002772919.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
 gi|226095973|dbj|BAH44415.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
          Length = 1434

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 178/919 (19%), Positives = 313/919 (34%), Gaps = 165/919 (17%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ I   ++    + N K   +            +LV   EG + L +LVSR ++    +
Sbjct: 581  LKDIKEAEIKSLAELNEKSNEEADYKSGRPFHATILVQNKEGLKNLYKLVSRSHVETFFR 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               RI  S L +   EGL++ T    G + ++     S    K +  F      +   + 
Sbjct: 641  -WPRIQRSQLSKY-REGLLIGTACKDGELMQSILRGKSPEELKEVAAFYDFIEVQPISHY 698

Query: 187  QRHRGYDRY--------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
                  +             ++VQ+       +VAT +  FL+ +D    DV +      
Sbjct: 699  SPLLRNEEIPSLETMKGYHEKIVQMGKELGKLVVATGDVHFLNPQDEIFRDVFLLSKGDP 758

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFI 296
                       P  Y     EM+  FS L E  A E  V      + +++  +PI  +  
Sbjct: 759  TAGN------QPPLYFHTTDEMLEAFSFLGEEIAKEIVVTNTNAIADMIEDISPIPDKLY 812

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                  I +  ++ELR       + RL  G        +    RL+ ELN I +  F   
Sbjct: 813  TP----IIEGADDELRQMCYD--KARLLYGDP----LPELVEHRLEKELNSIIKHGFGVI 862

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF---------------- 400
            +LI    +  +  +   VG  RGS   S  A    IT+++PL                  
Sbjct: 863  YLISQRLVTKSLNDGYLVG-SRGSVGSSFVATMSEITEVNPLPPHYRCPNCKHSEFITDG 921

Query: 401  -------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                      + FE FL      +PD D++F  D +    +Y Q
Sbjct: 922  SIASGFDLEDKACTQCGTMYAKDGQDIPFETFLGFKGDKVPDIDLNFSGDYQPRAHKYTQ 981

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G + V +  T G++  K A   V +                                
Sbjct: 982  ELFGADYVYRAGTIGTVAEKTAYGYVRKYADE---------------------------- 1013

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVR 550
               R   L +  + R++       G+ R    H  GI++      +    P+     D  
Sbjct: 1014 ---RGMTLRNAEISRIV---NGCTGVKRTTGQHPGGIIVVPDYMEIEDFCPIQFPADDNE 1067

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
            S+   T F+   I    L+K D LG    T+++   D        +D   IP DD +T  
Sbjct: 1068 SEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLTG-----MDPKTIPLDDKKTMS 1121

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            + ++   LG+   E  G      G+     + +  ++   +P     +V  +   +G + 
Sbjct: 1122 IFSSTEALGVSP-EQIGTNMGTLGIPEFGTKFVRQMLEDTKPTTFAELVQISGLSHGTDV 1180

Query: 671  IVS-IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             ++    LI     +   VI  ++ +M +  +  G   S A  +  ++ K      D Q+
Sbjct: 1181 WLNNAQDLIRNGTCKLPDVIGCRDDIM-VYLIYKGLEPSRAFKIMESVRKGKGVPEDDQE 1239

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E          +        +    +   Y F K+HA AY +++ + A+ K H P+EF A
Sbjct: 1240 E----------MRNNNVPEWYIQSCQRIKYMFPKAHATAYVMMAVRIAYFKVHRPLEFYA 1289

Query: 790  ASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS-------------------- 820
               T+  D+ +          IK+  ++         P                      
Sbjct: 1290 TYFTVRADDFDIPLMVKGSAAIKQKIEEIEGKGHDAQPKEKALLTVLEMALEMIERGFRF 1349

Query: 821  -----VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                   +    F +  + +     A+ G+GT  A  I++A     F S ED  SR    
Sbjct: 1350 VNVDLYKSDATRFLIEGDSLIAPFNALPGLGTNAAISIVQAREQGEFLSKEDLLSR---S 1406

Query: 876  KLNRRVLESLVFAGALDCF 894
            ++++ +LE L   GAL   
Sbjct: 1407 RISKTILEFLDEQGALQGL 1425



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S L+   S+ +++   A     AIA+TD   + +  E    A    I+ I+
Sbjct: 331 VELHCHTPMSALDAVASVKSLISTAAKWGHKAIAVTDHGVVQAFPEAYSIAKKNNIKCIL 390

Query: 72  GC 73
           G 
Sbjct: 391 GM 392


>gi|300856235|ref|YP_003781219.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528]
 gi|300436350|gb|ADK16117.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528]
          Length = 1449

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 175/923 (18%), Positives = 309/923 (33%), Gaps = 191/923 (20%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
            D+    +   + +         ++L     G + L +LVS  +L D   +  RI  S L 
Sbjct: 600  DIYGRDEAAKKEEYKKLKTYHAIILAKDYVGLKNLYKLVSYSHL-DYFYKKPRILKS-LY 657

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL------LTFKKLFGDRLYVNLQRHRG 191
            +  +EGLI+ +  S G + +A     S    + L      L  + L  +   V  ++  G
Sbjct: 658  KKYSEGLILGSACSEGELYQAILLGKSDEEIEELAKGYDYLEIQPLGNNDYLVRTEQVPG 717

Query: 192  YD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             +       ++V L       +VAT +  F+  ED     +L A                
Sbjct: 718  KEYLEEINKKIVALGEKLNKLVVATGDVHFMDPEDEIYRRILEAGQGFKDADN------Q 771

Query: 250  PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               YLK   EM+  FS L +  A E  V    + S + +  +PI P       D  ++  
Sbjct: 772  APLYLKTTEEMLEEFSYLGKEKAYEVVVTNTNKISDMCEPISPISPEKCPPHIDGCEQTI 831

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++    KA            +      +  + RLD EL  I +  FS  ++I    +  +
Sbjct: 832  KDIAYKKAHE----------LYGDPLPEIVQSRLDRELESIIKNGFSVMYIIAQKLVWKS 881

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------------- 400
             ++   VG  RGS   S  A    IT+++ L                             
Sbjct: 882  NEDGYLVG-SRGSVGSSFVANMTGITEVNSLPPHYRCPKCKYSDFSDYGVKNGFDLPDKV 940

Query: 401  -------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                          + FE FL  +    PD D++F  + + +  +Y +  +G     +  
Sbjct: 941  CPVCGEKLAKDGIDIPFETFLGFNGDKEPDIDLNFSGEYQAKAHKYTEVIFGKGTTFKAG 1000

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G++  K A   V +             K IP + A                       
Sbjct: 1001 TIGTIAEKTAFGYVKKYFDE---------KNIPVNKA----------------------- 1028

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYR---DVRSDLPVTQFNMKW 562
               +  IS    G+ R    H  GI++    R + +  P+     D  SD+  T F+   
Sbjct: 1029 --EITRISAGCTGIKRTTGQHPGGIIVVPKGREIFEFCPVQHPADDPNSDIITTHFDYHS 1086

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK------- 615
            I++  L+K D LG    T+++   D        V+   IP DD ET  + ++        
Sbjct: 1087 IDQ-NLLKLDILGHDDPTVIRMLQDITG-----VNPHEIPMDDKETMSIFSSTEALGVTP 1140

Query: 616  -------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
                   GT GI +  +  +R  L    P    D+I +  L     +             
Sbjct: 1141 EQINSKVGTFGIPEFGTKFVRGMLVDTMPKAFSDLICISGLSHGTDVWLG---------- 1190

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEM 725
                +   LID  +      I  ++ +M            +    +++R+    K  E+ 
Sbjct: 1191 ----NAKDLIDDGIVTLSEAICTRDDIMIYLIKKGLPPNSAFKIMELVRKGKVSKQPEKW 1246

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             + +           + +      +    K   Y F K+HAAAY +++++ AW K H P 
Sbjct: 1247 AEYEAL---------MREHKVPEWYIDSCKKIKYMFPKAHAAAYVMMAFRIAWFKVHIPK 1297

Query: 786  EFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS---------------- 820
             + AA  T+     +         K+ +  ++ +    Q  P                  
Sbjct: 1298 AYYAAYFTIRAKAFDSEFMIFGKEKVIEKMREIQIMGNQATPKDKDMYDDLEIVLEMYER 1357

Query: 821  ---------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                       +    F V ++ +   + +I G+G   A  I  A+ ++ F S+ED   R
Sbjct: 1358 GFKFLPIDLYKSHATKFIVEEDGLRPPINSISGMGNIAAESIFSAAREEQFSSIEDVKKR 1417

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                     +L+     G L   
Sbjct: 1418 AKIGNSAVDLLK---KFGCLKGL 1437



 Score = 69.6 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQP 69
           V L +H+  S ++   S  +++ +  +    +IAITD   + +  E  +        ++ 
Sbjct: 339 VELHMHTQMSQMDAMTSATDLIKRAMSWGMKSIAITDHGVVQAFPEAHKLLGRDNPDMKI 398

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           I G +  +       +TN       T   ++
Sbjct: 399 IYGVEAYLAPDKKPSVTNPKGQSIDTTYCVL 429


>gi|150390440|ref|YP_001320489.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens QYMF]
 gi|149950302|gb|ABR48830.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens QYMF]
          Length = 1432

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 177/907 (19%), Positives = 315/907 (34%), Gaps = 171/907 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+             I++     +G + L +++S  +L +   +  R+  S L +   
Sbjct: 594  NTKLVKDVDYKKLDTYHIMIYAKNQKGLKNLYQIISESHL-EYFYKKPRVPKSILTKY-R 651

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRY 195
            EGL++ T   +G + ++   N  +   ++  ++      + +  ++  +        +  
Sbjct: 652  EGLLIGTACEAGELYKSILGNKPESDIEKTASYYDYLEIQPISNNQFLLEKGMVNTTEEL 711

Query: 196  --RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                 ++V L     LP++AT +  FL   D     +LMA    T              Y
Sbjct: 712  QNINKKIVALGNKINLPVIATGDVHFLDPNDEVFRKILMAGQGFTDADN------QAPLY 765

Query: 254  LKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            LK   EM+  F  L    A +  V   R+ +  ++   PI       E +      + EL
Sbjct: 766  LKTTDEMLDEFRYLGSKTAKDVVVNNPRKLNEEIEKLIPIPDGTFPPEIEG----SDEEL 821

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R       E       I      +  + RLD ELN I    ++  ++I    +  + ++ 
Sbjct: 822  RRMCYEKAER------IYGNPIPEIVKTRLDKELNSIISNGYAVMYIIAQKLVTKSLRDG 875

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPL--------------------------------- 398
              VG  RGS   S  A    IT+++PL                                 
Sbjct: 876  YLVG-SRGSVGSSFAATMSDITEVNPLAPHYVCPECRYSEFITDGSYGSGADLPDKKCPE 934

Query: 399  --------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
                       + FE FL  +    PD D++F  + + E   Y +  +G  +V +  T G
Sbjct: 935  CHGQLIKDGHEIPFEVFLGFEGDKEPDIDLNFAGEYQSEAHHYTEELFGKGKVYRAGTIG 994

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            ++  K A   V + L                                 RE       V+R
Sbjct: 995  TIADKTAYGFVKKYL-------------------------------EERELYYTSAEVNR 1023

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMY---RDVRSDLPVTQFNMKWIEK 565
            L   +    G+ R +  H  G++I    L   +  P+     D  S +    F+   I  
Sbjct: 1024 L---TMGCTGVKRTSGQHPGGVMIVPANLDVHEFSPIQYPANDSTSGVITMHFDYHSI-S 1079

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
              L+K D LG    T+++   D             IP DD +T  L TT   LGI   E 
Sbjct: 1080 GRLLKLDILGHDVPTIIKMLEDLTGINA-----QEIPLDDEKTISLFTTTKNLGIDPKEL 1134

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKE 684
             G      G+     + +  ++   +P     +V  +   +G +  ++    L+   + E
Sbjct: 1135 -GCEVGTLGIPEFGTKFVRQMLLDTKPSTFGELVRISGLSHGTDVWLNNAQDLVRNNIAE 1193

Query: 685  TQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
             + VI  ++ +M    L       +    + +R+  G K +EE                +
Sbjct: 1194 LKDVISTRDDIMNYLMLKGLPPKSAFKIMENVRKGKGLKPEEE--------------QLM 1239

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
             +      +    K   Y F K+HAAAY ++S++ A+ K HYP  F A   T + ++ + 
Sbjct: 1240 KENNVPEWYIDSCKKIKYMFPKAHAAAYVMMSFRIAYCKVHYPQAFYATYFTTKAEDFDA 1299

Query: 802  ---------IKKFCQDARQFN------------------------IQIMPPSVNTPCVD- 827
                     +K    +                             I+++   V     D 
Sbjct: 1300 HLIGKGKAVVKSKIDELELMGNDLTAKDKNFLTVLEVALELYCRNIELLSVDVYKSDPDK 1359

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            F + D ++   L A++GVG   AR+I +      F S ED   R    K+ + V+E+L  
Sbjct: 1360 FTIIDGKLLPPLRALQGVGQNAARNIAKVREAGEFLSKEDLRERA---KVTKTVIEALTN 1416

Query: 888  AGALDCF 894
             G +   
Sbjct: 1417 HGCIADL 1423



 Score = 78.1 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +   +H+  S ++G  S + ++ + A     AIAITD   + +  E        GI+ I 
Sbjct: 335 IEFHMHTKMSSMDGVSSTSELVKRAADWGHEAIAITDHGVVQAFPEAMDAGKKHGIKVIY 394

Query: 72  GC 73
           G 
Sbjct: 395 GM 396


>gi|296132882|ref|YP_003640129.1| DNA polymerase III, alpha subunit [Thermincola sp. JR]
 gi|296031460|gb|ADG82228.1| DNA polymerase III, alpha subunit [Thermincola potens JR]
          Length = 1442

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 177/899 (19%), Positives = 313/899 (34%), Gaps = 165/899 (18%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                +V+LV   +G + L +LV+  +L     +  RI  S L +   EGLI+ +   +G 
Sbjct: 617  RSHHVVILVKNQQGLKNLYQLVTDSHLK-YYHRHPRIPKSELIK-KREGLIIGSACEAGE 674

Query: 155  IDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYT 206
            + RA   N+ Q   + +  F      + +  +   +   R   YD  RE   ++ +L   
Sbjct: 675  LFRALLDNAPQERLEEIAGFYDYLEIQPVGNNEFLLREGRVNSYDELRELNRKIFELGRK 734

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
               P+VAT +  FL  ED     VL+A          D        YLK   EM+  FS 
Sbjct: 735  IGRPVVATGDVHFLDPEDAVYRAVLLA---GKGFEDADN---QAPLYLKTTEEMLEEFSY 788

Query: 267  LP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
            L    A E  +E   R +  +    P+   F   + +      E ++    ++  +    
Sbjct: 789  LGLENAREVVIENPVRIAESIDSIKPMPDDFFPPKIEGA----EEQIIELTISTAKKIYG 844

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                         +QR+D ELN I    F+  +LI    ++ + ++   VG  RGS   S
Sbjct: 845  D------PLPDIVQQRVDKELNSIITNGFAVLYLIAHKLVKKSNEDGYLVG-SRGSVGSS 897

Query: 385  VTAYALTITDIDPLR-----------------------------------------FSLL 403
              A    IT+++PL                                            + 
Sbjct: 898  FVATMTGITEVNPLPPHYICRNCKYSEFVTDGSYGSGADMPDKDCPVCGKPLKKDGHDIP 957

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL      +PD D++F  + +    ++ +  +G   V +  T G++  K A   V  
Sbjct: 958  FEVFLGFKGDKVPDIDLNFSGEYQPRAHKFTEELFGKGYVFRAGTTGTIADKTAFGFVKN 1017

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             L                                 R+    +  + RL   +    G+ R
Sbjct: 1018 YL-------------------------------EERKIIKRNAEITRL---ASGCTGVKR 1043

Query: 524  HASTHAAGIVIGDRPLS--QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                H  G+++  R +      P+     D  S +  T F+   I    ++K D LG   
Sbjct: 1044 TTGQHPGGVMVVPRDMDVHDFTPLQFPADDKTSGVITTHFDYHSI-SGRIVKLDILGHDD 1102

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
             T+++   D        VD   IP D+ +   L +   +LG+   +         G+   
Sbjct: 1103 PTVIKMLEDLTG-----VDAKTIPLDEPKVLQLFSGTESLGVTPDDIRSN-VGTYGIPEF 1156

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQ 697
              + +  ++   RP     +V  +   +G +  ++    LI          I  ++ +M 
Sbjct: 1157 GTKFVRQMLEDTRPKTFSELVRISGFSHGTDVWLNNAQDLIRSGTCTLSEAISTRDDIM- 1215

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            +  +  G   S A  +   + K    + +           +  + +      +    K  
Sbjct: 1216 VYLIYKGLEPSRAFKIMEGVRKGKGVKPED----------EEYMRENNVPEWYIDSCKKI 1265

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIKK 804
             Y F K+HA AY +++++ A+ K +YP  F A   T+  D  +             KI++
Sbjct: 1266 KYMFPKAHAVAYVMMAFRIAYFKVYYPEAFYATYFTVRADEFDADIICRGKEAVLNKIRE 1325

Query: 805  FCQ--------------------DARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIK 843
                                   +     I+I P S V +    F + +  +    AA++
Sbjct: 1326 IENKGNEASAKEKNLLTILEVALEMYVRGIKIRPVSLVESTATRFLITEEGLLPPFAALQ 1385

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG   AR I  A  +  F S+ED  +R    K    VL++    G L     +    L
Sbjct: 1386 GVGEAAARSIERARDEAKFTSIEDLRTRARISKTVVEVLQN---HGCLRNLPETDQLAL 1441



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 40/94 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++G   + +++ ++      A+AITD   + +  E  + A  + ++ I 
Sbjct: 344 VELHLHTKMSAMDGLTDVKDLVARLGEWGHAAVAITDHGVVQAFPEAYEAAQKSNVKIIY 403

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G +  +       + N  +        +V  + T
Sbjct: 404 GIEAYLIEDGAPIIINPREEAVKDATYVVFDLET 437


>gi|224499902|ref|ZP_03668251.1| DNA polymerase III PolC [Listeria monocytogenes Finland 1988]
          Length = 1444

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 175/935 (18%), Positives = 305/935 (32%), Gaps = 194/935 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            I+                   +G       P    +   TA G + L +L++   + +  
Sbjct: 588  IKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYF 646

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLF 178
             +  RI  S L+++  EGLI+ T  S G +  A      Q AEK    +       K ++
Sbjct: 647  YRVPRIPRSQLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVY 705

Query: 179  GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               +   L R           +V++      P+VAT N  +    D     +L+      
Sbjct: 706  APLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILIHSQGG- 764

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFI 296
              +        PD + +   EM+  F+ L E  A E  V  A      ++   PI     
Sbjct: 765  --ANPLNRAELPDVHFRTTDEMLKEFAFLGEEKAKEIVVTNANLVVDWMENLKPIKDELY 822

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              + D      E+E+RN + A       +         +    RL+ EL  I    F+  
Sbjct: 823  TPKIDGA----EDEVRNMSYAMAHQLYGEKL------PEIVEARLEKELKSIIGHGFAVI 872

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------- 403
            +LI    ++ +  +   VG  RGS   S  A    IT+++PL    L             
Sbjct: 873  YLISHKLVKKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDG 931

Query: 404  ----------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                        FE FL      +PD D++F  D +     Y +
Sbjct: 932  SVGSGFDLPDKDCTHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTK 991

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G + V +  T G++  K A   V R  +   +   R                     
Sbjct: 992  EIFGEDYVFRAGTIGTVAEKTAFGYV-RNYERDMNMTIRGA------------------- 1031

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVR 550
                        +DRL+       G+ R    H  GI++      +    P+        
Sbjct: 1032 -----------EIDRLVA---GCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATD 1077

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
            S+   T F+   I    ++K D LG    T ++   D        +D   IP DD +   
Sbjct: 1078 SEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPDVMK 1131

Query: 611  LL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            L               +  GTLGI +  +  +RQ LE  +P    +++ +  L     + 
Sbjct: 1132 LFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHGTDVW 1191

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVL 713
                            +   LI     E   VI  ++ +M       L S  +    + +
Sbjct: 1192 LG--------------NAEELIKNKTCELPDVIGCRDDIMVFLIYQGLESSLAFKIMESV 1237

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+   K + +EM++             +        +    K   Y F K+HAAAY +++
Sbjct: 1238 RKG--KGLTDEMEEA------------MMANKVPLWYIESCKKIKYMFPKAHAAAYVLMA 1283

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVE--------------------------------- 800
             + A+ K HYP+ F A   T+  D+ +                                 
Sbjct: 1284 VRIAYFKVHYPLYFYATYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLL 1343

Query: 801  KIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
             + +   +               +   +F +  + +     AI  +GT  A+ I+ A  +
Sbjct: 1344 TVLEIANEMLARGFHFQKVDLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAAREN 1403

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              F S ED   R    K+++ +++ +   G L+  
Sbjct: 1404 GEFLSKEDLQQR---GKVSKTIIQYMDDQGCLEGL 1435



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401


>gi|328957406|ref|YP_004374792.1| DNA polymerase III PolC [Carnobacterium sp. 17-4]
 gi|328673730|gb|AEB29776.1| DNA polymerase III PolC [Carnobacterium sp. 17-4]
          Length = 1446

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 167/944 (17%), Positives = 318/944 (33%), Gaps = 199/944 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A                + +++   +  K   P      ++ ++  G + L +LVS
Sbjct: 585  FLKEAKEE-----HEMFYHDQLNEHIGEGDAYKRARP--FHATIMATSQAGLKNLFKLVS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               +++   ++ R+  S L ++  EGLI+ T  S G +  A        A+ +   +   
Sbjct: 638  -SSMVNYFFRTARLPRSELNKL-REGLIIGTACSQGEVFEAMMQKGYDEAKNKAKFYDYI 695

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K+++   +   L  +          +V++     +P+VAT N  +L+ ED     +
Sbjct: 696  EVMPKEVYAPLIEQELVTNESDLEEIIRNLVKIGKELNIPVVATGNVHYLNPEDSIYRKI 755

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P+ + +  +EM+  FS L +       +ENT +IA      
Sbjct: 756  LINSQGG---ANPLNRAELPEVHFRTTTEMLETFSFLGKETAQQIVVENTNKIADMVEDG 812

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            +    P+       + +      E+E+R  +                   +   +R++ E
Sbjct: 813  I---TPVKTDLYTPKIEG----SEDEIRQLSYDEAHRLYGN------PLPEIIEKRIEKE 859

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----- 399
            LN I    FS  +LI    +  +  +   VG  RGS   S  A    IT+++P+      
Sbjct: 860  LNSIIGNGFSVIYLISQKLVHKSMSDGYLVG-SRGSVGSSFVATMTGITEVNPMPPHYTC 918

Query: 400  ------------------------------------FSLLFERFLNPDRMSMPDFDIDFC 423
                                                  + FE FL      +PD D++F 
Sbjct: 919  PNCQFSEFFTDGSVGSGYDLPDKNCPKCEARLHKDGHDIPFETFLGFYGDKVPDIDLNFS 978

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D + +   Y +  +G E V +  T G++  + A   V                    + 
Sbjct: 979  GDYQAKAHNYTKELFGEEYVFRAGTIGTVADRTAFGYVK-----------------GYER 1021

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQ 541
             + ++L+A   D                  +++   G+ R    H  GI++      +  
Sbjct: 1022 DNNLTLRAAEID-----------------RLAKGSTGVKRTTGQHPGGIIVIPDYMDVYD 1064

Query: 542  LVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
              P+        S+   T F+   I    ++K D LG    T+++   D        VD 
Sbjct: 1065 FTPIQFPADAQDSEWKTTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDL-----SGVDP 1118

Query: 599  SLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
              IP DD E   +               +  GTLGI +  +  +R  LE   P    +++
Sbjct: 1119 KTIPTDDPEVMKIFGGTEVLGVTPEQIQSKTGTLGIPEFGTRFVRGMLEETMPTTFAELL 1178

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
             +  L     +          N +E I   +  +  ++     +++Y    +    L  G
Sbjct: 1179 QISGLSHGTDVWLG-------NAEELIRMNNIPLSEVIGCRDDIMVY----LIHNGLEDG 1227

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
             +    + +R+  G              I    +  +        +        Y F K+
Sbjct: 1228 IAFKIMESVRKGKG--------------IPDDWQKAMRDQKIPEWYIESCLKIKYMFPKA 1273

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK--------------------- 803
            HAAAY +++ + A+ K H+P+ + AA  ++  D+ + +                      
Sbjct: 1274 HAAAYVLMALRVAYYKVHFPILYYAAYFSVRADDFDLVAMAKGKESLKLKMKEITDKGLD 1333

Query: 804  ------------KFCQDARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGTTTA 850
                        + C +  +         +      +F +  N +     A+  +G   A
Sbjct: 1334 ASTKEKNTLTVLELCNEMVERGFNFKMVDLEKSDPTNFVIEGNSLIAPFRAVPSLGANVA 1393

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVL-ESLVFAGALDC 893
            + I EA  DKPF S ED   R    K     L E+ V  G  D 
Sbjct: 1394 KQIKEARNDKPFLSKEDLAKRGKVSKTVIEYLNENGVLKGLPDE 1437



 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA---LEFSQKACAAGIQ 68
           V L +HS+ S ++   ++ +++D+ A     A+AITD    F A    +        GI+
Sbjct: 340 VELHLHSNMSQMDATNTVVDLVDQAAKWGHKAVAITDH---FGAQSFPDAFHAGQKNGIK 396

Query: 69  PII 71
            + 
Sbjct: 397 ILY 399


>gi|254828680|ref|ZP_05233367.1| polC [Listeria monocytogenes FSL N3-165]
 gi|254829923|ref|ZP_05234578.1| DNA polymerase III PolC [Listeria monocytogenes 10403S]
 gi|254898515|ref|ZP_05258439.1| DNA polymerase III PolC [Listeria monocytogenes J0161]
 gi|254911994|ref|ZP_05262006.1| DNA polymerase III [Listeria monocytogenes J2818]
 gi|254936321|ref|ZP_05268018.1| polC [Listeria monocytogenes F6900]
 gi|255026351|ref|ZP_05298337.1| DNA polymerase III PolC [Listeria monocytogenes FSL J2-003]
 gi|284801705|ref|YP_003413570.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578]
 gi|284994847|ref|YP_003416615.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923]
 gi|258601084|gb|EEW14409.1| polC [Listeria monocytogenes FSL N3-165]
 gi|258608911|gb|EEW21519.1| polC [Listeria monocytogenes F6900]
 gi|284057267|gb|ADB68208.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578]
 gi|284060314|gb|ADB71253.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923]
 gi|293589958|gb|EFF98292.1| DNA polymerase III [Listeria monocytogenes J2818]
          Length = 1444

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 175/935 (18%), Positives = 305/935 (32%), Gaps = 194/935 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            I+                   +G       P    +   TA G + L +L++   + +  
Sbjct: 588  IKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYF 646

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLF 178
             +  RI  S L+++  EGLI+ T  S G +  A      Q AEK    +       K ++
Sbjct: 647  YRVPRIPRSQLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVY 705

Query: 179  GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               +   L R           +V++      P+VAT N  +    D     +L+      
Sbjct: 706  APLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILIHSQGG- 764

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFI 296
              +        PD + +   EM+  F+ L E  A E  V  A      ++   PI     
Sbjct: 765  --ANPLNRAELPDVHFRTTDEMLKEFAFLGEEKAKEIVVTNANLVVDWMENLKPIKDELY 822

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              + D      E+E+RN + A       +         +    RL+ EL  I    F+  
Sbjct: 823  TPKIDGA----EDEVRNMSYAMAHQLYGEKL------PEIVEARLEKELKSIIGHGFAVI 872

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------- 403
            +LI    ++ +  +   VG  RGS   S  A    IT+++PL    L             
Sbjct: 873  YLISHKLVKKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDG 931

Query: 404  ----------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                        FE FL      +PD D++F  D +     Y +
Sbjct: 932  SVGSGFDLPDKDCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTK 991

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G + V +  T G++  K A   V R  +   +   R                     
Sbjct: 992  EIFGEDYVFRAGTIGTVAEKTAFGYV-RNYERDMNMTIRGA------------------- 1031

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVR 550
                        +DRL+       G+ R    H  GI++      +    P+        
Sbjct: 1032 -----------EIDRLVA---GCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATD 1077

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
            S+   T F+   I    ++K D LG    T ++   D        +D   IP DD +   
Sbjct: 1078 SEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPDVMK 1131

Query: 611  LL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            L               +  GTLGI +  +  +RQ LE  +P    +++ +  L     + 
Sbjct: 1132 LFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHGTDVW 1191

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVL 713
                            +   LI     E   VI  ++ +M       L S  +    + +
Sbjct: 1192 LG--------------NAEELIKNKTCELPDVIGCRDDIMVFLIYQGLESSLAFKIMESV 1237

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+   K + +EM++             +        +    K   Y F K+HAAAY +++
Sbjct: 1238 RKG--KGLTDEMEEA------------MMANKVPLWYIESCKKIKYMFPKAHAAAYVLMA 1283

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVE--------------------------------- 800
             + A+ K HYP+ F A   T+  D+ +                                 
Sbjct: 1284 VRIAYFKVHYPLYFYATYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLL 1343

Query: 801  KIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
             + +   +               +   +F +  + +     AI  +GT  A+ I+ A  +
Sbjct: 1344 TVLEIANEMLARGFHFQKVDLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAAREN 1403

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              F S ED   R    K+++ +++ +   G L+  
Sbjct: 1404 GEFLSKEDLQQR---GKVSKTIIQYMDDQGCLEGL 1435



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401


>gi|325263721|ref|ZP_08130454.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            sp. D5]
 gi|324030759|gb|EGB92041.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            sp. D5]
          Length = 1498

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 175/945 (18%), Positives = 324/945 (34%), Gaps = 184/945 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F Q      I  +       DM       N           I++L+    G   L +L
Sbjct: 617  VKFVQMLKEQNITTLKEMNRFGDM-------NPNAIRKLPTYHIIILIKNDIGRYNLYQL 669

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +++ +L     +  RI  S L E   EGLI+ +   +G + +A   N S  +  RL  F 
Sbjct: 670  ITQSHLT-YYARRPRIPKSVLNEY-REGLIVGSACEAGELYQAILNNKSAESIARLADFY 727

Query: 176  KLF------GDRLYVNLQRHRGYD-----RYRESQVVQLAYTHELPLVATNNSLFLSEED 224
              +       +R  +   ++   +          ++V+L    + P+V T +  FL  ED
Sbjct: 728  DYYEIQPLGNNRFMMVSDKYPDINTKEDLEEINRKIVELGEKFKKPVVGTCDVHFLDPED 787

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI--ARRCS 282
                 ++MA    +   +       P  YL+   EM+  F  L  A    + I    +  
Sbjct: 788  EVYRRIIMAGKGFSDADE------QPPLYLRTTEEMLEEFEYLGSAKAREIVIENTNKIC 841

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
             +++  +PI P     +C  +    E +LR+           +         +    RL+
Sbjct: 842  DMVEKISPINP----NKCPPVIANSEQDLRDICYNKAHEIYGEDL------PEPVSTRLE 891

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             ELN I    +S  ++I    +  +  +   VG  RGS   S  A    IT+++PL    
Sbjct: 892  KELNSIISNGYSVMYIIAQKLVWKSNDDGYLVG-SRGSVGSSFVATMSGITEVNPLSPHY 950

Query: 400  ------------------------------------------FSLLFERFLNPDRMSMPD 417
                                                      F + FE FL       PD
Sbjct: 951  YCEKCHYNEFDSPEVKAFAGGCGFDMPDKVCPNCGETLVKAGFDIPFETFLGFKGDKEPD 1010

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  D + +  +Y +  +G     +  T G+L  K A   V                
Sbjct: 1011 IDLNFSGDYQAKAHKYTEVLFGEGHTFKAGTIGTLADKTAFGYVRNYY------------ 1058

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                                 R  R     +DR+   +    G+ R    H  GIV+   
Sbjct: 1059 -------------------EERGHRKRKCEIDRI---TVGCTGIRRSTGQHPGGIVVLPH 1096

Query: 538  --PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
               +++  P+         D+  T F+   I+   L+K D LG    T+++   +++   
Sbjct: 1097 GHSINEFTPVQHPANDMTTDIITTHFDYHSIDH-NLLKLDILGHDDPTMIRTLEEYITSD 1155

Query: 593  GVKVDLSLI--------PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
             +  + +          P DD +   L      LGI   +  G      G+     + +I
Sbjct: 1156 AMDNEYNDENPFIATEIPLDDKKVLSLFHDTSALGIKPEDIDGCNLGCLGIPEFGTDFVI 1215

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQ 700
             +V   +P  + +++  +   +G    + +   L+          I  ++ +M       
Sbjct: 1216 QMVQDAKPQSLSDLIRISGLSHGTNVWLGNAQELVKSGKATISTCICTRDDIMIYLINQG 1275

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            + S  S +  + +R+  G K + E                + +    + +    K   Y 
Sbjct: 1276 VDSALSFTIMESVRKGKGLKPEWEEA--------------MKEKDVPDWYIWSCKQISYM 1321

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIKKFC----- 806
            F K+HAAAY +++Y+ A+ K +YP+ +  A   +              +K+  +      
Sbjct: 1322 FPKAHAAAYVMMAYRIAYCKINYPLAYYGAYFGIRANAFSYEIMCQGKDKLNYYIKDYKR 1381

Query: 807  -------------------QDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGVG 846
                               Q+      + +P  + T     F++ D ++   L++I+G+G
Sbjct: 1382 RADSLSNKEQDVVKDMKIVQEMYARGYEFLPLDIYTAKATKFQIIDGKLMPPLSSIEGMG 1441

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               A  + EA+ D P+ SL+DF  R    K     +  L   G L
Sbjct: 1442 EKAAEAVEEAAKDGPYLSLDDFRQRTKVSKTVIDFMADLGLFGDL 1486



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           V L  H+  S ++G   + +I+ +      PA+AITD  
Sbjct: 372 VELHCHTKMSDMDGVSEVKDIVKRAHDWGHPAVAITDHG 410


>gi|16803360|ref|NP_464845.1| DNA polymerase III PolC [Listeria monocytogenes EGD-e]
 gi|21263551|sp|Q8Y7G1|DPO3_LISMO RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|16410736|emb|CAC99398.1| polC [Listeria monocytogenes EGD-e]
          Length = 1444

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 175/935 (18%), Positives = 304/935 (32%), Gaps = 194/935 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            I+                   +G       P    +   TA G + L +L++   + +  
Sbjct: 588  IKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYF 646

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLF 178
             +  RI  S L+++  EGLI+ T  S G +  A      Q AEK    +       K ++
Sbjct: 647  YRVPRIPRSQLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVY 705

Query: 179  GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               +   L R           +V++      P+VAT N  +    D     +L+      
Sbjct: 706  APLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILIHSQGG- 764

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFI 296
              +        PD + +   EM+  F+ L E  A E  V  A      ++   PI     
Sbjct: 765  --ANPLNRAELPDVHFRTTDEMLKEFAFLGEEKAKEIVVTNANLVVDWMENLKPIKDELY 822

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              + D      E+E+RN + A       +         +    RL+ EL  I    F+  
Sbjct: 823  TPKIDGA----EDEVRNMSYAMAHQLYGEKL------PEIVEARLEKELKSIIGHGFAVI 872

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------- 403
            +LI    ++ +  +   VG  RGS   S  A    IT+++PL    L             
Sbjct: 873  YLISHKLVKKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDG 931

Query: 404  ----------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                        FE FL      +PD D++F  D +     Y +
Sbjct: 932  SVGSGFDLPDKDCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTK 991

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G + V +  T G++  K A   V R  +   +   R                     
Sbjct: 992  EIFGEDYVFRAGTIGTVAEKTAFGYV-RNYERDMNMTIRGA------------------- 1031

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVR 550
                        +DRL+       G+ R    H  GI++      +    P+        
Sbjct: 1032 -----------EIDRLVA---GCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATD 1077

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
            S+   T F+   I    ++K D LG    T ++   D        +D   IP DD +   
Sbjct: 1078 SEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPDVMK 1131

Query: 611  LL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            L               +  GTLGI +  +  +RQ LE  +P    +++ +  L     + 
Sbjct: 1132 LFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHGTDVW 1191

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVL 713
                            +   LI     E   VI  ++ +M       L S  +    + +
Sbjct: 1192 LG--------------NAEELIKNKTCELPDVIGCRDDIMVFLIYQGLESSLAFKIMESV 1237

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+   K + +EM++             +        +    K   Y F K+HAAAY +++
Sbjct: 1238 RKG--KGLTDEMEEA------------MMANKVPLWYIESCKKIKYMFPKAHAAAYVLMA 1283

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVE--------------------------------- 800
             + A+ K HYP+ F A   T+  D+ +                                 
Sbjct: 1284 VRIAYFKVHYPLYFYATYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLL 1343

Query: 801  KIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
             + +   +               +   +F +    +     AI  +GT  A+ I+ A  +
Sbjct: 1344 TVLEIANEMLARGFHFQKVDLYKSSADEFIIDGESLIPPFNAIPSLGTNVAKQIVAAREN 1403

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              F S ED   R    K+++ +++ +   G L+  
Sbjct: 1404 GEFLSKEDLQQR---GKVSKTIIQYMDDQGCLEGL 1435



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401


>gi|302386245|ref|YP_003822067.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
 gi|302196873|gb|ADL04444.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
          Length = 1516

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 171/912 (18%), Positives = 302/912 (33%), Gaps = 182/912 (19%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
               +++L +   G   L  L+S  ++ D   +  RI  S L +   EGLI+ +   +G I
Sbjct: 681  THHVIILAANDVGRVNLYRLISYSHI-DFYARRPRIPKSVLNQ-NREGLIVGSACEAGEI 738

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR----------YRESQVVQLAY 205
             +A     S     +L+ F      +   N       ++              ++V L  
Sbjct: 739  YQALLRGVSDAELAKLVNFYDYLEIQPLGNNGFMLRDEKSSVKSEQDLIEINQRIVTLGE 798

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                P+ AT +  FL  ED     ++MA                   YL+   EM+  F 
Sbjct: 799  QFGKPVCATCDVHFLDPEDEVYRRIIMAGQGFKDSDD------QAPLYLRTTEEMLKEFQ 852

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
             L         ++NT +IA  C  I  V        IE   +D        LR       
Sbjct: 853  YLGPNKAEEVVIKNTRKIADMCEKISPVRPDKCAPVIENSDED--------LRKICYDRA 904

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                 +             +RL+ EL+ I    F+  ++I    +  + ++   VG  RG
Sbjct: 905  YAIYGENL------PSIVIERLERELHSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRG 957

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S  AY   IT+++ L                                         
Sbjct: 958  SVGSSFVAYLSGITEVNSLSPHYYCASCHYYDFDSDEVKQFSGMAGCDMPDKVCPVCGLP 1017

Query: 400  -----FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                 F + FE FL       PD D++F  + + +   Y +  +G  +  +  T G+L  
Sbjct: 1018 LAKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHDYTEVIFGKGQTFRAGTIGTLAD 1077

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V    +  +    R C                                  +  I
Sbjct: 1078 KTAFGYVKNYYE-EHGVRKRNC---------------------------------EISRI 1103

Query: 515  SQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRSDLP---VTQFNMKWIEKAGLI 569
             Q   G+ R    H  GI++      +    P+ R           T F+   I+   L+
Sbjct: 1104 VQGCVGVRRTTGQHPGGIIVLPHGEEIYSFTPVQRPANDMTTMTVTTHFDYHSIDH-NLL 1162

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
            K D LG    T+++   D +    V      IP D  E   L      LGI   +  G +
Sbjct: 1163 KLDILGHDDPTMIRMLQDLIGFDPV----KDIPLDSKEVMSLFQNTSALGITPEDIGGCK 1218

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGV 688
                G+     +  + ++   +P    ++V      +G +  + +   LI       Q  
Sbjct: 1219 LGALGVPEFGTDFAMQMLIDTQPKYFSDLVRIAGLAHGTDVWLGNAQTLIQEGKATIQTA 1278

Query: 689  IIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
            I  ++ +M     +    G S S  + +R+  G K + E +              ++   
Sbjct: 1279 ICTRDDIMIYLISMGIEEGLSFSIMESVRKGKGLKTEWEEE--------------MTAHG 1324

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV------ 799
              + +    K   Y F K+HAAAY +++++ A+ K  YP+ + A+  ++  +        
Sbjct: 1325 VPDWYIWSCKKIKYMFPKAHAAAYVMMAWRIAYCKVFYPLAYYASFFSIRANGFSYELMC 1384

Query: 800  ---EKIKKF------------------------CQDARQFNIQIMPPSV-NTPCVDFKVG 831
               +K++ +                         Q+        MP  +       F++ 
Sbjct: 1385 QGRDKLEHYLADYKKRMDTLSKKEQDTLRDMRIVQEMYARGYDFMPIDIYRAKARHFQII 1444

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            D ++  SL++I G+G   A  I++A  D  F S EDF +R    K    ++  L      
Sbjct: 1445 DGKLMPSLSSIDGLGEKAADAIVDAGKDGAFLSREDFRNRTKVSKTVCDLMGDLEL--LF 1502

Query: 892  DCFGYSRMQLLQ 903
            D    +++ L  
Sbjct: 1503 DLPESNQLSLFD 1514



 Score = 76.2 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           V L  H+  S ++G   + +I+ +      PAIAITD   +  A   +  A   G
Sbjct: 406 VELHCHTKMSDMDGVSEVKDIVKRAKRWGMPAIAITDHGCV-QAFPDANHALDKG 459


>gi|224501737|ref|ZP_03670044.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-561]
          Length = 1444

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 175/935 (18%), Positives = 304/935 (32%), Gaps = 194/935 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            I+                   +G       P    +   TA G + L +L++   + +  
Sbjct: 588  IKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYF 646

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLF 178
             +  RI  S L+++  EGLI+ T  S G +  A      Q AEK    +       K ++
Sbjct: 647  YRVPRIPRSQLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVY 705

Query: 179  GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               +   L R           +V++      P+VAT N  +    D     +L+      
Sbjct: 706  APLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILIHSQGG- 764

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFI 296
              +        PD + +   EM+  F+ L E  A E  V  A      ++   PI     
Sbjct: 765  --ANPLNRAELPDVHFRTTDEMLKEFAFLGEEKAKEIVVTNANLVVDWMENLKPIKDELY 822

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              + D      E+E+RN + A       +         +    RL+ EL  I    F+  
Sbjct: 823  TPKIDGA----EDEVRNMSYAMAHQLYGEKL------PEIVEARLEKELKSIIGHGFAVI 872

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------- 403
            +LI    ++ +  +   VG  RGS   S  A    IT+++PL    L             
Sbjct: 873  YLISHKLVKKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDG 931

Query: 404  ----------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                        FE FL      +PD D++F  D +     Y +
Sbjct: 932  SVGSGFDLPDKDCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTK 991

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G + V +  T G++  K A   V R  +   +   R                     
Sbjct: 992  EIFGEDYVFRAGTIGTVAEKTAFGYV-RNYERDMNMTIRGA------------------- 1031

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVR 550
                        +DRL+       G+ R    H  GI++      +    P+        
Sbjct: 1032 -----------EIDRLVA---GCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATD 1077

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
            S+   T F+   I    ++K D LG    T ++   D        +D   IP DD +   
Sbjct: 1078 SEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPDVMK 1131

Query: 611  LL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            L               +  GTLGI +  +  +RQ LE  +P    +++ +  L     + 
Sbjct: 1132 LFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHGTDVW 1191

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVL 713
                            +   LI     E   VI  ++ +M       L S  +    + +
Sbjct: 1192 LG--------------NAEELIKNKTCELPDVIGCRDDIMVFLIYQGLESSLAFKIMESV 1237

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+   K + +EM++             +        +    K   Y F K+HAAAY +++
Sbjct: 1238 RKG--KGLTDEMEEA------------MMANKVPLWYIESCKKIKYMFPKAHAAAYVLMA 1283

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVE--------------------------------- 800
             + A+ K HYP+ F A   T+  D+ +                                 
Sbjct: 1284 VRIAYFKVHYPLYFYATYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLL 1343

Query: 801  KIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
             + +   +               +   +F +    +     AI  +GT  A+ I+ A  +
Sbjct: 1344 TVLEIANEMLARGFHFQKVDLYKSSADEFIIDGESLIPPFNAIPSLGTNVAKQIVAAREN 1403

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              F S ED   R    K+++ +++ +   G L+  
Sbjct: 1404 GEFLSKEDLQQR---GKVSKTIIQYMDDQGCLEGL 1435



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401


>gi|110801936|ref|YP_698978.1| DNA polymerase III PolC [Clostridium perfringens SM101]
 gi|110682437|gb|ABG85807.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens SM101]
          Length = 1449

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 173/897 (19%), Positives = 321/897 (35%), Gaps = 179/897 (19%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            +  I++L     G + L +LVS  +L D   +  R+  S + E   EGLI+ +   +G +
Sbjct: 624  LHHIIILAKNQTGIKNLYKLVSMAHL-DYFARRPRLPKSIITEY-REGLIIGSACEAGQL 681

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTH 207
             +A     +    K + +F      + +  +   +     +  +  RE   ++  L    
Sbjct: 682  YKAVLEGKTDGELKEIASFYDYLEIQPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEM 741

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
            + P+VAT +  FL   D     ++MA          D     P  Y +  +EM+  F  L
Sbjct: 742  DKPVVATCDCHFLDPNDEVFRRIIMA---GQGYGDADN---QPPLYFRTTNEMMKEFEYL 795

Query: 268  PE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
             E       +ENT +IA     +  +     P  IE          E E+RN  +  +  
Sbjct: 796  GEEACREVVIENTQKIADMVEAVKPIPDETFPPKIEG--------AEEEIRNMTMNKVHS 847

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
               +         +  ++RLD ELN I    ++  +LI    +  + ++   VG  RGS 
Sbjct: 848  IYGENL------PEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSLEDGYLVG-SRGSV 900

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++ L                                           
Sbjct: 901  GSSFVATMSDITEVNGLPPHYVCPNCKKSEFFLDGSISSGADLPDKNCPDCGTKYIKDGH 960

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A   
Sbjct: 961  DIPFETFLGFEGDKEPDIDLNFSGEYQAVVHKYTEVLFGKGYVFKAGTIGTVAEKTAYGF 1020

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V + LQ                                R   ++   ++RL   +    G
Sbjct: 1021 VKKYLQE-------------------------------RGLVVSQAEIERL---TIGCTG 1046

Query: 521  LYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + R +  H  GI++   D  +    P+     DV +D+  T F+   I    L+K D LG
Sbjct: 1047 IKRTSGQHPGGIMVVPNDNEIYNFCPIQHPADDVNTDIITTHFDYHSI-SGRLLKLDILG 1105

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
                T+L+   D        +D   IP +D +   L T+   LG+ + E  G      G+
Sbjct: 1106 HDDPTVLRMLQDLTG-----LDPKTIPLNDPKVISLFTSPDALGVTKEEL-GCEVGSYGL 1159

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQ 694
                 + +  ++   +P    ++V  +   +G +  + +    I       +  I  ++ 
Sbjct: 1160 PEFGTKFVRQMLVDTQPKSFADLVRISGLSHGTDVWLNNAQYFIKEGYTTLKDCIATRDD 1219

Query: 695  VM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            +M       L    + +  + +R+   K + EE +              + +    + + 
Sbjct: 1220 IMVYLMYKDLPPKTAFTIMEKVRKG--KGLSEEDEAL------------MREKNVPDWYI 1265

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK---------- 801
               K   Y F K HA AY +++ + A+ K +YP  +     T+  D+ +           
Sbjct: 1266 ESCKRIKYMFPKGHAVAYVMMAVRIAYYKVYYPEAYYTTYFTVRADDFDADLICKGEEAI 1325

Query: 802  -----------------------IKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYY 837
                                   I +   +  +  +  +      +    FK+ ++ I  
Sbjct: 1326 KAKMEELNSLGNNISVKEKGLLTILEISYEMYKRGLNFLKVDLYKSEATKFKIEEDGIRP 1385

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             L A++GVG   A+ I+E   +  F S ED   R    K+++ V+E+L   G L+  
Sbjct: 1386 PLNALQGVGDNAAKSIVECRVNGEFISKEDLRIR---SKVSKTVIETLDNHGCLEGM 1439



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 36/86 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   + + I+++ A     A+AITD   + +  +    A    I+ I 
Sbjct: 350 VELHMHTTMSSMDAVTAASKIVERAAKFGHKAVAITDHGVVQAFPDAQIAAKKNNIKVIY 409

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + N  +  F    
Sbjct: 410 GVEGYLADNGTPIVINGHEESFDDEY 435


>gi|18310673|ref|NP_562607.1| DNA polymerase III PolC [Clostridium perfringens str. 13]
 gi|168214476|ref|ZP_02640101.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens CPE str. F4969]
 gi|24418366|sp|Q8XJR3|DPO3_CLOPE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|18145354|dbj|BAB81397.1| DNA polymerase III alpha subunit [Clostridium perfringens str. 13]
 gi|170714031|gb|EDT26213.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens CPE str. F4969]
          Length = 1449

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 173/897 (19%), Positives = 321/897 (35%), Gaps = 179/897 (19%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            +  I++L     G + L +LVS  +L D   +  R+  S + E   EGLI+ +   +G +
Sbjct: 624  LHHIIILAKNQTGIKNLYKLVSMAHL-DYFARRPRLPKSIITEY-REGLIIGSACEAGQL 681

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTH 207
             +A     +    K + +F      + +  +   +     +  +  RE   ++  L    
Sbjct: 682  YKAVLEGKTDGELKEIASFYDYLEIQPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEM 741

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
            + P+VAT +  FL   D     ++MA          D     P  Y +  +EM+  F  L
Sbjct: 742  DKPVVATCDCHFLDPNDEVFRRIIMA---GQGYGDADN---QPPLYFRTTNEMMKEFEYL 795

Query: 268  PE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
             E       +ENT +IA     +  +     P  IE          E E+RN  +  +  
Sbjct: 796  GEEACREVVIENTQKIADMVEAVKPIPDETFPPKIEG--------AEEEIRNMTMNKVHS 847

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
               +         +  ++RLD ELN I    ++  +LI    +  + ++   VG  RGS 
Sbjct: 848  IYGENL------PEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSLEDGYLVG-SRGSV 900

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++ L                                           
Sbjct: 901  GSSFVATMSDITEVNGLPPHYVCPNCKKSEFFLDGSISSGADLPDKNCPDCGAKYIKDGH 960

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A   
Sbjct: 961  DIPFETFLGFEGDKEPDIDLNFSGEYQAVVHKYTEVLFGKGYVFKAGTIGTVAEKTAYGF 1020

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V + LQ                                R   ++   ++RL   +    G
Sbjct: 1021 VKKYLQE-------------------------------RGLVVSQAEIERL---TIGCTG 1046

Query: 521  LYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + R +  H  GI++   D  +    P+     DV +D+  T F+   I    L+K D LG
Sbjct: 1047 IKRTSGQHPGGIMVVPNDNEIYNFCPIQHPADDVNTDIITTHFDYHSI-SGRLLKLDILG 1105

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
                T+L+   D        +D   IP +D +   L T+   LG+ + E  G      G+
Sbjct: 1106 HDDPTVLRMLQDLTG-----LDPKTIPLNDPKVISLFTSPDALGVTKEEL-GCEVGSYGL 1159

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQ 694
                 + +  ++   +P    ++V  +   +G +  + +    I       +  I  ++ 
Sbjct: 1160 PEFGTKFVRQMLVDTQPKSFADLVRISGLSHGTDVWLNNAQYFIKEGYTTLKDCIATRDD 1219

Query: 695  VM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            +M       L    + +  + +R+   K + EE +              + +    + + 
Sbjct: 1220 IMVYLMYKDLPPKTAFTIMEKVRKG--KGLSEEDEAL------------MREKNVPDWYI 1265

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK---------- 801
               K   Y F K HA AY +++ + A+ K +YP  +     T+  D+ +           
Sbjct: 1266 ESCKRIKYMFPKGHAVAYVMMAVRIAYYKVYYPEAYYTTYFTVRADDFDADLICKGEEAI 1325

Query: 802  -----------------------IKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYY 837
                                   I +   +  +  +  +      +    FK+ ++ I  
Sbjct: 1326 KAKMEELNSLGNNISVKEKGLLTILEISYEMYKRGLNFLKVDLYKSEATKFKIEEDGIRP 1385

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             L A++GVG   A+ I+E   +  F S ED   R    K+++ V+E+L   G L+  
Sbjct: 1386 PLNALQGVGDNAAKSIVECRVNGEFISKEDLRLR---SKVSKTVIETLDNHGCLEGM 1439



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 36/86 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   + + I+++ A     A+AITD   + +  +    A    I+ I 
Sbjct: 350 VELHMHTTMSSMDAVTAASKIVERAAKFGHKAVAITDHGVVQAFPDAQIAAKKNNIKVIY 409

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + N  +  F    
Sbjct: 410 GVEGYLADNGTPIVINGHEESFDDEY 435


>gi|76798876|ref|ZP_00781084.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae 18RS21]
 gi|76585772|gb|EAO62322.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae 18RS21]
          Length = 620

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 171/538 (31%), Positives = 277/538 (51%), Gaps = 31/538 (5%)

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
            FR+   +     +  +I++++EG  R  S HAAG+V+ D  L+  +P+      D+ +TQ
Sbjct: 4    FRQIIDSKIEYQKAYDIAKRIEGNPRQTSIHAAGVVMSDDLLTDHIPLKN--GEDMMITQ 61

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKG 616
            ++   +E  GL+K DFLGL+ LT +QK  + + +   + + L  I  +D ET  L     
Sbjct: 62   YDASSVEDNGLLKMDFLGLRNLTFVQKMKEKVDKDYGISIQLETIDLEDKETLKLFAAGQ 121

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            T GIFQ E SG    L  ++P+C ED++A  SL RPG  D    + NR+ GKEKI  + P
Sbjct: 122  TKGIFQFEQSGAINLLRRIRPECFEDVVATTSLNRPGASDYTENFINRRFGKEKIDLVDP 181

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I P+L+ T G+++YQEQVMQIAQ  +G++L ++D+LRRAM KK  +EM K  + F+ GA
Sbjct: 182  VIAPILQPTYGIMLYQEQVMQIAQTYAGFTLGKSDLLRRAMSKKNSKEMQKMSQSFLEGA 241

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
               G  +  A  IFE +AKFA YGFN+SHA AY+ +++Q A+ K HY   F    +    
Sbjct: 242  VSKGHRQEDARLIFERMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYSDVFYDIMINYSN 301

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
             +      +  DA  F   I  PS+NT     ++   +IY  L  IKGV    A  I   
Sbjct: 302  SD------YLIDAIDFGFVIEKPSINTISYRDRIYKKKIYLGLKNIKGVPNDLAYWI--- 352

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
            S ++PF S+EDF  R+  +      +  L+  GA D F  +R ++  +LD++  +     
Sbjct: 353  SKNQPFQSIEDFLMRLPQQFQKSGFISPLIAIGAFDEFDNNRRKITSNLDSLFTFV---- 408

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                N+  ++FA     +       +    ++S ++E EQ +LG   S HPL      + 
Sbjct: 409  ----NELGSLFADTSYHWL------EVEDFSNSEKYEMEQDILGVGISPHPLVG----IS 454

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANFFP 1033
            +   + +         +   +   +   +  +T+  G ++ ++T  +   + +   FP
Sbjct: 455  QKASRPFIPISQVQENSEATILVQLKQVKVIRTKSSGQQMAFLTVMDINSKMDITVFP 512


>gi|303238571|ref|ZP_07325105.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
 gi|302593969|gb|EFL63683.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
          Length = 1446

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 188/1007 (18%), Positives = 325/1007 (32%), Gaps = 225/1007 (22%)

Query: 19   SYSLLEGALSLNNIL---------DKIAADQQP----AIAITDTNNLFSALE-FSQKACA 64
             ++ L+       I                         A+ D +          +K   
Sbjct: 528  DFTYLDTLSLAKEIFPDYKSYKLGRIAKNLGIKVDVAHRALDDVDTTVKVFNIMLEKLKE 587

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+Q +         ++      + +         ++L     G + L +LVS  +L D 
Sbjct: 588  KGVQTLEDVDTYSSDEE----AKKSEYKKLKTYHAIILAKDYVGLKNLYKLVSYSHL-DY 642

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL------LTFKKLF 178
              +  RI  S  ++  +EGLI+ +  S G + +A     S    + +      L  + L 
Sbjct: 643  FYKKPRILKSVYKKY-SEGLILGSACSEGELFQAILHGKSDDEIETIAKDYDYLEIQPLG 701

Query: 179  GDRLYV--NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
             +   V       + Y +    ++V L      P+VAT +  FL  ED     +L A   
Sbjct: 702  NNDYLVRKEEVPDKEYIKEINRKIVALGEQLNKPVVATGDVHFLDPEDEIYRRILEA--- 758

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAP 290
                   D+       YLK   EM+  FS L E       + NT  IA  C  I  +   
Sbjct: 759  GQGYDDADK---QAPLYLKTTDEMLEEFSYLGEEKAYEVVVTNTNLIADMCEQISPISPE 815

Query: 291  ILPRFIE---KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              P  IE   +   DI   + +EL                       +  +QRLD EL+ 
Sbjct: 816  KCPPHIEGCEQTIKDISFGKAHELYG-----------------DPLPEIVQQRLDRELDS 858

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------- 400
            I +  FS  ++I    +  + ++   VG  RGS   SV AY   IT+++ L         
Sbjct: 859  IIKNGFSVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSVVAYMTGITEVNALPPHYRCPSC 917

Query: 401  ---------------------------------SLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL  D    PD D++F  + +
Sbjct: 918  KYSDFTDYGFNNGFDLPDKPCPVCGEMLAKDGIDIPFETFLGFDGDKEPDIDLNFSGEYQ 977

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +  +Y +  +G     +  T G++  K A   V +                        
Sbjct: 978  AKAHKYTEVIFGKGTTFKAGTVGTIADKTAFGYVKKYY---------------------- 1015

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPM 545
                       RE  +    ++R+   ++   G+ R    H  GI++    R + +  P+
Sbjct: 1016 ---------EEREIHINKAEIERI---AKGCTGIKRTTGQHPGGIIVVPKGREIFEFCPV 1063

Query: 546  YR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                 D  SD+  T F+   I++  L+K D LG    T+++   D        VD   IP
Sbjct: 1064 QHPADDPDSDIITTHFDYHSIDQ-NLLKLDILGHDDPTMIRMLQDITG-----VDPKTIP 1117

Query: 603  FDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             DD +T  L ++               GT G+ +  +  +R  L    P    D+I +  
Sbjct: 1118 MDDKDTMSLFSSTEALGVTPQQINSKVGTFGVPEFGTKFVRGMLLDTMPKQFADLICISG 1177

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GY 705
            L     +                 +   LID         +  ++ +M            
Sbjct: 1178 LSHGTDVWLG--------------NAKDLIDAGTVTLSEAVCTRDDIMVYLMKKGLPPNA 1223

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +    + +R+    K  +  D           +  + K      +    K   Y F K+H
Sbjct: 1224 AFKIMETVRKGKALKEPKWPD----------YEALMRKHEVPEWYIDSCKKIKYMFPKAH 1273

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIK--------- 803
            A AY +++++ AW K H P+ + AA  ++     +             K+K         
Sbjct: 1274 ACAYIMMAFRIAWFKVHIPLAYYAAYFSIRAKAFDAEFMINGKEVVKAKMKEIEMQGNQA 1333

Query: 804  -----------KFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
                       +   +  +   + +P     +   +F + D  I   L +I G+G   A 
Sbjct: 1334 ANKDKDMYDDLELVLEMYERGFKFLPIDLYKSHATNFLIEDGSIRPPLNSISGMGNVAAE 1393

Query: 852  HIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             I  A      F S+++  SR          LE     G L     S
Sbjct: 1394 GIYTAFKEGGHFGSIDELKSRAKIGNSTIDSLE---KFGCLKGLPKS 1437



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           V L +H+  S ++   S  +++ +  +    +IAITD   + S  E  +
Sbjct: 336 VELHMHTQMSQMDAMSSATDLIKRAMSWGMKSIAITDHGVVQSFPEAHK 384


>gi|160940984|ref|ZP_02088323.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC BAA-613]
 gi|158436074|gb|EDP13841.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC BAA-613]
          Length = 1565

 Score =  436 bits (1121), Expect = e-119,   Method: Composition-based stats.
 Identities = 163/891 (18%), Positives = 297/891 (33%), Gaps = 180/891 (20%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
               +++L     G   +  LVS  +L +   +  RI  S L++   EGLI+ +   +G +
Sbjct: 731  THHVIILAKNDIGRVNMYRLVSWSHL-EYYARRPRIPKSLLEKY-REGLIIGSACEAGEL 788

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR----------YRESQVVQLAY 205
             +A    +      RL++F      +   N       ++              ++V+L  
Sbjct: 789  YQALLRGAPDTEIARLVSFYDYLEIQPLGNNAFMLRDEKSTVKSQEDLIEINKKIVELGM 848

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                 + AT +  FL  +D     ++MA                   YL+   EM+  FS
Sbjct: 849  QFNKLVCATCDVHFLDPQDEVYRRIIMAGQGFKDSDD------QAPLYLRTTEEMLEEFS 902

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
             L         + NT +IA  C  I  V     P  IE        + +  L        
Sbjct: 903  YLGPDKAHEVVITNTRKIADMCEKIAPVRPDKCPPVIE--------DSDKTLTKICYDRA 954

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                 +         +    RL+ EL+ I    F+  ++I    +  + ++   VG  RG
Sbjct: 955  HEMYGEDL------PKIVVDRLERELHSIITNGFAVMYIIAQKLVWKSNEDGYLVG-SRG 1007

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S  A    IT+++PL                                         
Sbjct: 1008 SVGSSFVATMSGITEVNPLSPHYHCPKCRYYDFDSEEVKQFSGMAGCDMPDKECPVCGTP 1067

Query: 400  -----FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                 F + FE FL       PD D++F  + + +   Y +  +G  +  +  T G+L  
Sbjct: 1068 LEKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHDYTEVIFGKGQTFRAGTIGTLAD 1127

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +                                   R  R  +  ++R++  
Sbjct: 1128 KTAFGYVKKYY-------------------------------EERGTRKRNCEINRIV-- 1154

Query: 515  SQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLI 569
             Q   G+ R    H  GI++      +    P+             T F+   I+   L+
Sbjct: 1155 -QGCVGVRRTTGQHPGGIIVLPLGEEIYSFTPVQHPANDMTTSTVTTHFDYHSIDH-NLL 1212

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
            K D LG    T+++   D +    V      IP D  E   L      LGI   +  G  
Sbjct: 1213 KLDILGHDDPTMIRMLQDLIGIDPV----KDIPLDSREVMSLFQDTSALGIMPDDIGGCP 1268

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGV 688
                G+     +  + ++   +P    ++V      +G +  + +   LI       Q  
Sbjct: 1269 LGALGVPEFGTDFAMQMLLDTKPKYFSDLVRIAGLAHGTDVWLGNAQTLIQEGKATIQTA 1328

Query: 689  IIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
            I  ++ +M       L  G S +  + +R+  G K + E +            +G+ +  
Sbjct: 1329 ICTRDDIMVYLIAQGLEQGLSFTIMESVRKGKGLKPEWEEE---------MKAHGVPE-- 1377

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE---------M 796
                +    K   Y F K+HAAAY +++++ A+ K  YP+ + AA  ++           
Sbjct: 1378 ---WYIWSCKKIKYMFPKAHAAAYVMMAWRIAYCKIFYPLAYYAAFFSIRASAFSYEIMC 1434

Query: 797  DNVEKIKKF------------------------CQDARQFNIQIMPPSV-NTPCVDFKVG 831
               +K++ +                         Q+         P  +       F++ 
Sbjct: 1435 QGRDKLEYYLADYKKRADTLSKKEQDTLRDMRIVQEMYARGFDFTPIDIYRAKARHFQII 1494

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
            D ++  SL++I G+G   A  +++A  D  F S+EDF +R         ++
Sbjct: 1495 DGKLMPSLSSIDGLGEKAADAVVDAVKDGAFLSIEDFSNRSKVNGTLCSLM 1545



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           V L  H+  S ++G   + +I+ +      PA+A+TD   +  A   +  A   G
Sbjct: 456 VELHCHTKMSDMDGVSEVKSIIKRAKQWGMPAVAVTDHGCV-QAFPDANHALDKG 509


>gi|330971219|gb|EGH71285.1| error-prone DNA polymerase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 520

 Score =  436 bits (1121), Expect = e-119,   Method: Composition-based stats.
 Identities = 155/549 (28%), Positives = 258/549 (46%), Gaps = 34/549 (6%)

Query: 97  PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
           P +VLLV    GY+ L +L++        K   R+      E   +GL+ L         
Sbjct: 1   PKVVLLVENQAGYEALCKLITVARRR-ARKGEYRLLREDF-EPAPDGLLALWLPDLDGDA 58

Query: 157 RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATN 215
           +A                ++ F +RL++ +  HRG D   R + ++ LA +  +P VA+ 
Sbjct: 59  QACLAGG--------RWLRERFAERLWLGVGLHRGPDDEQRLADLLALAQSLGIPAVASG 110

Query: 216 NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENT 274
           +    +       D + A+ H T V++         + +L+    +   + D    L  +
Sbjct: 111 DVHMHARGRRALQDTMTAIRHHTTVAEAGHLLFANGERHLRPLDALSEHYPDW--LLAES 168

Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
           V IARRC+F L       P  +  +     +   + LR     G+  R   G        
Sbjct: 169 VRIARRCTFDLGDLKYEYPHELVPKG----QTSTSWLRELTERGVRRRWPGGLTPAT--- 221

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
              R +++ EL +IA  KF  YFL V D +++A+  +I +  GRGS A S   YAL IT+
Sbjct: 222 ---RAQVEKELALIAEKKFDSYFLTVHDIVEFARSQHI-LCQGRGSAANSAVCYALGITE 277

Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           ++P + +LLFERF++ +R   PD D+DF  DRR+EVI+Y+  +YG  R A      +   
Sbjct: 278 LNPEQSNLLFERFISRERNEPPDIDVDFEHDRREEVIQYIFRRYGRGRAALTAVASTYHG 337

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD--PSVDRLL 512
             A+RDV + L +P  Q++ L +             ++    R RE       P + R+L
Sbjct: 338 SGAMRDVAKVLGLPPDQINALAEAFSRWS------DSLPSPERLREYGFDADTPILKRVL 391

Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            ++ +L G  RH S H  G VI + PL  LVP+     +D  + Q++   ++  GL+K D
Sbjct: 392 ALTGELIGFPRHLSQHPGGFVISEHPLETLVPVENAAMADRTIIQWDKDDLDLVGLLKVD 451

Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            L L  L+ L+++ D +   RG +  L+ +P DD +TY +++   T+G+FQ+ES      
Sbjct: 452 ILALGMLSALRRTFDLVHLHRGQRWTLATLPGDDRKTYEMISRADTIGVFQIESRAQMAM 511

Query: 632 LEGMQPDCI 640
           L  ++P+  
Sbjct: 512 LPRLRPEKF 520


>gi|210622608|ref|ZP_03293268.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275]
 gi|210154109|gb|EEA85115.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275]
          Length = 1426

 Score =  436 bits (1121), Expect = e-119,   Method: Composition-based stats.
 Identities = 170/937 (18%), Positives = 323/937 (34%), Gaps = 183/937 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F       G++ +      +   D  K+             I L+     G + L ++
Sbjct: 568  IKFLGMLKKQGVEKLSDVNTVLGKVDYTKLK---------THHITLIAKNQTGIKNLYKI 618

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL--- 172
            VS  ++ +   ++ RI  S L E   EG+I+ +   +G +  A          ++++   
Sbjct: 619  VSDAHV-NHFYRAPRILQSVLDEY-REGIIVGSACEAGVVYDAVKKRLPDEEMEKIIAPY 676

Query: 173  ---TFKKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +  +R  ++       D  +E   +VV+ A       VAT +  FL + D   
Sbjct: 677  DYIEVMPIDNNRFMIDNGDVEDEDELKEINKRVVETAKKFGKIPVATGDVHFLDKHDAVL 736

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFIL 285
              VL       +  ++           +   EM+  FS L E  A E  VE     + ++
Sbjct: 737  RRVLKFSQGFKLDDEETYLH------FRTTDEMLDEFSYLGEELAYEVVVENTNLIADMV 790

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            +   PI           + +  + ELR               I      +   +RL+ EL
Sbjct: 791  EDVKPIPDETYPP----VIEGSDVELREMCFKKA------VDIYGDPLPEIVEKRLNREL 840

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------ 399
            N I    ++  ++I    +  +  +   VG  RGS   S  A    IT+++PL       
Sbjct: 841  NSIIGNGYAVMYIIAQKLVAKSLSDGYLVG-SRGSVGSSFAATMSDITEVNPLPAHYVCP 899

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                   + FE FL  +    PD D++F
Sbjct: 900  NKECKYSYFYAIGEWGSGIDLPDKVCPKCGEKLIKNGHDIPFEVFLGFEGDKEPDIDLNF 959

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
                +  + +Y +  +G   V +  T G++  K A     + +                 
Sbjct: 960  SGSYQPVIHKYTEELFGEGHVYRAGTIGTVAEKTAFGYAKKYV----------------- 1002

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLS 540
                             E    +     +L +++   G+ R +  H  G+++      + 
Sbjct: 1003 -----------------EENDIEVPSAEVLRLAEGCTGVKRTSGQHPGGVMVIPDYKDVY 1045

Query: 541  QLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+          +  T F+   I    ++K D LG    T+++   D        + 
Sbjct: 1046 DFTPIQYPANDVNCGVITTHFDYHSI-SGRILKLDILGHDGPTIIRMLEDITG-----IT 1099

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  T  L T+   LG+   E          +     + +  ++   +P     
Sbjct: 1100 ITDIPLDDPATMSLFTSTEALGVTPEEID-CEIGCLAIPEFGTKFVRQMLLDTKPTTFAE 1158

Query: 658  IVVYNNRKNGKE-KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVL 713
            +V  +   +G +  + +   L+   +   + VI  ++ +M       L    S +  + +
Sbjct: 1159 LVRISGLSHGTDVWVNNAQDLVRENIVGLKEVISTRDDIMNYLIFKGLQPKMSFTIMESV 1218

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+  G K + E             +N +      +  ++      Y F K+HA AY + S
Sbjct: 1219 RKGRGLKPEHEAA---------MIENNVPDWYINSCKKI-----KYMFPKAHAVAYVMTS 1264

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVE-----------KIKK-----------------F 805
            ++ A+ K HYP  F A   T ++++ +           K KK                 +
Sbjct: 1265 FRLAYCKVHYPEAFYATYFTTKVEDFDADLIIKGYDAIKAKKKEIEELGNDATQKEKGMY 1324

Query: 806  C-----QDARQFNIQIMPPSV-NTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA 858
                  Q+     I+I P  +  +   +F+V G   +   + A++GVG   A HI+E   
Sbjct: 1325 IILEVAQEMYARGIKIAPVDIYKSSATEFEVIGPGLLRPPMTALQGVGENAAIHIVEERE 1384

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            +  F S EDF  R    K++R V+E+L   G+L    
Sbjct: 1385 NGEFISKEDFRKRT---KISRTVVETLDKHGSLGSMS 1418



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 2/107 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   S+  ++ + A    PAIAITD   +    +    A   GI+ + 
Sbjct: 327 VELHAHTQMSSMDAICSVKGLVSRAAKWGHPAIAITDHGVVQGFPDAMNAAKKEGIKVLY 386

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
           G +  +  +DN            +   +V  + T  G+  + + ++ 
Sbjct: 387 GVEGYLT-EDNKDAIEDANDKSLSQEFVVFDLET-TGFSNINDKITE 431


>gi|126698903|ref|YP_001087800.1| DNA polymerase III PolC-type [Clostridium difficile 630]
 gi|255100324|ref|ZP_05329301.1| DNA polymerase III PolC-type [Clostridium difficile QCD-63q42]
 gi|255306262|ref|ZP_05350434.1| DNA polymerase III PolC-type [Clostridium difficile ATCC 43255]
 gi|115250340|emb|CAJ68162.1| DNA polymerase III PolC-type (PolIII) [Clostridium difficile]
          Length = 1432

 Score =  436 bits (1121), Expect = e-119,   Method: Composition-based stats.
 Identities = 180/968 (18%), Positives = 348/968 (35%), Gaps = 189/968 (19%)

Query: 36   IAADQQPAI----AITDTNNLFSAL-EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGK 90
                  P +    A+ D         +F Q     G + +      +   D  K+     
Sbjct: 549  AKELGIPLLNHHRAVDDAEATALIFNKFLQMLTEKGAKTLSDVNNILGKIDYTKL----- 603

Query: 91   TPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGG 150
                +   I L+   + G + L +++S  ++ +   ++ RI  S L E   EGLI+ +  
Sbjct: 604  ----STNHITLIAKNSIGIKNLYKIISDAHV-NHFFRAPRILRSVLNEY-KEGLIIGSAC 657

Query: 151  SSGPIDRAFFFNSSQVAEKRLLTFKK------LFGDRLYVNLQRHRGYDRYRE--SQVVQ 202
             +G + +A   N S    K+++          +  +R  ++    +  +  RE   +++ 
Sbjct: 658  EAGVVFQAVKKNVSDEEMKKIIDLYDYIEVMPIDNNRFMIDKGEVKDEEELRELNRKLID 717

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
             A   +   VAT +  FL + +     VL       V  ++           +   EM+ 
Sbjct: 718  TAKKFDKIPVATGDVHFLDKHEAVLRKVLKYSQGFKVDEEETYLH------FRTTDEMLE 771

Query: 263  IFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
             FS L E  A E  VE +   + +++   PI     +     I +  + ELR        
Sbjct: 772  EFSYLGEELAYEVVVENSNLIADMVEDIKPI----PDDTYPPIIEGSDVELREMCYKKA- 826

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
             R+    I      +  ++RLD ELN I    ++  ++I    +  +  +   VG  RGS
Sbjct: 827  KRIYGDPI-----PEIVQKRLDRELNSIISNGYAVMYIIAQKLVAKSLSDGYLVG-SRGS 880

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S  A    IT+++PL                                          
Sbjct: 881  VGSSFAATMSDITEVNPLPAHYICENEDCKYSFFYEIGEWGSGVDLPDKDCPKCGRKLAK 940

Query: 400  --FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
                + FE FL  +    PD D++F  + +  + +Y +  +G   V +  T G++  K A
Sbjct: 941  NGHDIPFEVFLGFEGDKEPDIDLNFSGNYQPTIHKYTEELFGEGYVYRAGTIGTVAEKTA 1000

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
                 +     Y + + +   +PN                             +L +S  
Sbjct: 1001 FGYARK-----YVEENNIS--VPN---------------------------AEVLRLSNG 1026

Query: 518  LEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFD 572
              G+ R +  H  G+++      +    P+          +  T F+   I    ++K D
Sbjct: 1027 CTGVKRTSGQHPGGVMVIPDYKDVYDFTPIQYPANDTSCGVITTHFDYHSI-SGRILKLD 1085

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
             LG    T+++   D        ++++ IP DD ET  L T+   LG+   E +      
Sbjct: 1086 ILGHDGPTIIRMLEDMTG-----INITEIPLDDKETMSLFTSTEALGVTPEEIN-CPIGC 1139

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE-KIVSIHPLIDPMLKETQGVIIY 691
              +     + +  ++   +P     +V  +   +G +  + +   L+   +   + VI  
Sbjct: 1140 LAVPEFGTKFVRQMLLDTKPTTFAELVRISGLSHGTDVWVNNAQDLVREDIVGLKDVIST 1199

Query: 692  QEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++ +M            S +  + +R+  G K  E +++ K        KN + +    +
Sbjct: 1200 RDDIMNYLIFKGLPPKMSFTIMESVRKGKGLK-PEHIEEMK--------KNNVPEWYIGS 1250

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------- 800
              ++      Y F K+HA AY + S++ A+ K HYP  F A   T ++++ +        
Sbjct: 1251 CKKI-----KYMFPKAHAVAYVMTSFRIAYCKVHYPEAFYATYFTTKVEDFDADLIVKGL 1305

Query: 801  -----KIKKF--------------------CQDARQFNIQIMPPSVNTP-CVDF-KVGDN 833
                 KI +                       +     I+++P  +      +F  VG+ 
Sbjct: 1306 DAIKSKINEIESLGNDATTKEKGMLTVLEVALEMYARGIKLLPVDIYKSDATEFIVVGEK 1365

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +   +AAI+G+G   A +I     +  F S ED   R    K+++ V+E+L   G+L+ 
Sbjct: 1366 TLLPPMAAIQGLGGNAAINIQNERKNGEFISKEDLRKRT---KISKTVIETLTNHGSLEN 1422

Query: 894  FGYSRMQL 901
                R QL
Sbjct: 1423 MSE-RNQL 1429



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 2/107 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   S+  ++++ A     AIAITD   +    +      +  I+ + 
Sbjct: 333 VELHAHTQMSSMDAICSVKKLVERAAKWGHSAIAITDHGVVQGFPDAMNAGKSNNIKILY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
           G +  +   D+L + +           +  +     G+    + ++ 
Sbjct: 393 GVEGYLVEDDSLIIEDANDKELSQTFVVFDI--ETTGFSNTNDKITE 437


>gi|226323840|ref|ZP_03799358.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758]
 gi|225207389|gb|EEG89743.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758]
          Length = 1535

 Score =  436 bits (1121), Expect = e-119,   Method: Composition-based stats.
 Identities = 165/948 (17%), Positives = 316/948 (33%), Gaps = 181/948 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F Q      +  +       D+       N           +++L     G   L +L
Sbjct: 645  VKFVQMLKERELTTLAKVNEFGDL-------NPDSIKKLPTYHVIILARNDIGRVNLYQL 697

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS  +L+    +  RI  S L E   EGLI+ +   +G + RA           +++ F 
Sbjct: 698  VSASHLV-YYNRRPRIPKSVLNE-HREGLIVGSACEAGELYRALLDGKPDETIAKIVDFY 755

Query: 175  -----KKLFGDRLYVN---LQRHRGYDRY--RESQVVQLAYTHELPLVATNNSLFLSEED 224
                 + L  +   V    +      +       ++V L      P+V T +  F+  ED
Sbjct: 756  DYLEIQPLGNNAFMVESDKVTSVNSMEDIMDLNQKIVHLGEQFHKPVVGTCDVHFMDPED 815

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCS 282
                 ++MA          D+       YL+   EM+  F+ L   +A E  +      +
Sbjct: 816  EVYRRIIMA---GKGFGDADK---QAPLYLRTTEEMLDEFAYLGSEKAYEVVIRNTNLIA 869

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
             +++  +P+ P     +C  + +  +  LR+                     +   +RL+
Sbjct: 870  DMIEKISPVRP----DKCPPVIENSDQMLRDICYNKAHSMYGDPL------PEIVHERLE 919

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---- 398
             ELN I    F+  ++I    +  + ++   VG  RGS   S  A    IT+++PL    
Sbjct: 920  RELNSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFVATMAGITEVNPLVPHY 978

Query: 399  -----------------------------------------RFSLLFERFLNPDRMSMPD 417
                                                      F + FE FL       PD
Sbjct: 979  YCSNCHYSDFDSEEVKKYVGGCGHDMPDKNCPVCGQKLVKDGFDIPFETFLGFKGNKEPD 1038

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  D + +  +Y +  +G  +  +  T  +L  K A   V                
Sbjct: 1039 IDLNFSGDYQSKAHKYTEVIFGKGQTFRAGTIAALAEKTAYGYVKNYY------------ 1086

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD- 536
                                 R  R  +  +DR++       G+ R    H  GIV+   
Sbjct: 1087 -------------------EERGDRKRNCEIDRIVA---GCTGIRRSTGQHPGGIVVLPH 1124

Query: 537  -RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
               ++   P+         D+  T F+   I+   L+K D LG    T+++   + +   
Sbjct: 1125 GEDINSFTPIQHPANDMTTDIITTHFDYHSIDH-NLLKLDILGHDDPTMIKTLEELINSD 1183

Query: 593  GVKVDLS---------LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
             +               IP DD     L      LGI   +  G      G+     + +
Sbjct: 1184 AMDNKYDGVNNVFKATDIPLDDPGVMGLFAGTEVLGITPEDIDGCPLGCLGVPEFGTDFV 1243

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ-- 700
            I +V   +P  + +++  +   +G +  + +   LI+         I  ++ +M      
Sbjct: 1244 IQMVIDTKPKTLSDLIRISGLSHGTDVWLNNAQTLIEEGKATISTAICTRDDIMTYLINK 1303

Query: 701  -LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
             + S  S +  + +R+    K K    K+  +F     ++ + +      +    +   Y
Sbjct: 1304 GVESEESFTIMERVRKGTVAKGK---CKEWSQFKKDMLEHDVPE-----WYIWSCERIKY 1355

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS---------------------------- 791
             F K+HAAAY +++Y+ A+ K +YP+ + AA                             
Sbjct: 1356 MFPKAHAAAYVMMAYRIAYCKINYPLAYYAAYFGIRASAFSYELMGQGKEKLLYHMKEYK 1415

Query: 792  -------MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIK 843
                   ++ +  +  K  K   +        +P  +       F++  +++      I 
Sbjct: 1416 RRAELNQLSKKDQDTLKDMKNVLEMYARGFDFLPIDIYKSKASKFQIVGDKLLPPFNTID 1475

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            G+G   A  +  A+ D P+ S +DF  R    K    ++  +   G L
Sbjct: 1476 GMGDKAAEAMEIAAKDGPYLSKDDFRQRTKVSKTLVDLMADMGLLGDL 1523



 Score = 74.6 bits (182), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           V L  H+  S ++G     +++ +      PAIAITD   +  
Sbjct: 400 VELHCHTKMSDMDGVSEAKDLVKRAHDWGHPAIAITDHGVVQG 442


>gi|254974851|ref|ZP_05271323.1| DNA polymerase III PolC-type [Clostridium difficile QCD-66c26]
 gi|255313978|ref|ZP_05355561.1| DNA polymerase III PolC-type [Clostridium difficile QCD-76w55]
 gi|255516658|ref|ZP_05384334.1| DNA polymerase III PolC-type [Clostridium difficile QCD-97b34]
 gi|255649757|ref|ZP_05396659.1| DNA polymerase III PolC-type [Clostridium difficile QCD-37x79]
 gi|260682913|ref|YP_003214198.1| DNA polymerase III PolC-type [Clostridium difficile CD196]
 gi|260686511|ref|YP_003217644.1| DNA polymerase III PolC-type [Clostridium difficile R20291]
 gi|260209076|emb|CBA62219.1| DNA polymerase III PolC-type [Clostridium difficile CD196]
 gi|260212527|emb|CBE03476.1| DNA polymerase III PolC-type [Clostridium difficile R20291]
          Length = 1432

 Score =  435 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 180/968 (18%), Positives = 348/968 (35%), Gaps = 189/968 (19%)

Query: 36   IAADQQPAI----AITDTNNLFSAL-EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGK 90
                  P +    A+ D         +F Q     G + +      +   D  K+     
Sbjct: 549  AKELGIPLLNHHRAVDDAEATALIFNKFLQMLTEKGAKTLSDVNNILGKIDYTKL----- 603

Query: 91   TPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGG 150
                +   I L+   + G + L +++S  ++ +   ++ RI  S L E   EGLI+ +  
Sbjct: 604  ----STNHITLIAKNSIGIKNLYKIISDAHV-NHFFRAPRILRSVLNEY-KEGLIIGSAC 657

Query: 151  SSGPIDRAFFFNSSQVAEKRLLTFKK------LFGDRLYVNLQRHRGYDRYRE--SQVVQ 202
             +G + +A   N S    K+++          +  +R  ++    +  +  RE   +++ 
Sbjct: 658  EAGVVFQAVKKNVSDEEMKKIIDLYDYIEVMPIDNNRFMIDKGEVKDEEELRELNRKLID 717

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
             A   +   VAT +  FL + +     VL       V  ++           +   EM+ 
Sbjct: 718  TAKKFDKIPVATGDVHFLDKHEAVLRKVLKYSQGFKVDEEETYLH------FRTTDEMLE 771

Query: 263  IFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
             FS L E  A E  VE +   + +++   PI     +     I +  + ELR        
Sbjct: 772  EFSYLGEELAYEVVVENSNLIADMVEDIKPI----PDDTYPPIIEGSDVELREMCYKKA- 826

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
             R+    I      +  ++RLD ELN I    ++  ++I    +  +  +   VG  RGS
Sbjct: 827  KRIYGDPI-----PEIVQKRLDRELNSIISNGYAVMYIIAQKLVAKSLSDGYLVG-SRGS 880

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S  A    IT+++PL                                          
Sbjct: 881  VGSSFAATMSDITEVNPLPAHYICENEDCKYSFFYEIGEWGSGVDLPDKDCPKCGRKLAK 940

Query: 400  --FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
                + FE FL  +    PD D++F  + +  + +Y +  +G   V +  T G++  K A
Sbjct: 941  NGHDIPFEVFLGFEGDKEPDIDLNFSGNYQPTIHKYTEELFGEGYVYRAGTIGTVAEKTA 1000

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
                 +     Y + + +   +PN                             +L +S  
Sbjct: 1001 FGYARK-----YVEENNIS--VPN---------------------------AEVLRLSNG 1026

Query: 518  LEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFD 572
              G+ R +  H  G+++      +    P+          +  T F+   I    ++K D
Sbjct: 1027 CTGVKRTSGQHPGGVMVIPDYKDVYDFTPIQYPANDTSCGVITTHFDYHSI-SGRILKLD 1085

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
             LG    T+++   D        ++++ IP DD ET  L T+   LG+   E +      
Sbjct: 1086 ILGHDGPTIIRMLEDMTG-----INITEIPLDDKETMSLFTSTEALGVTPEEIN-CPIGC 1139

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE-KIVSIHPLIDPMLKETQGVIIY 691
              +     + +  ++   +P     +V  +   +G +  + +   L+   +   + VI  
Sbjct: 1140 LAVPEFGTKFVRQMLLDTKPTTFAELVRISGLSHGTDVWVNNAQDLVREDIVGLKDVIST 1199

Query: 692  QEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++ +M            S +  + +R+  G K  E +++ K        KN + +    +
Sbjct: 1200 RDDIMNYLIFKGLPPKMSFTIMESVRKGKGLK-PEHIEEMK--------KNNVPEWYIGS 1250

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------- 800
              ++      Y F K+HA AY + S++ A+ K HYP  F A   T ++++ +        
Sbjct: 1251 CKKI-----KYMFPKAHAVAYVMTSFRIAYCKVHYPEAFYATYFTTKVEDFDADLIVKGL 1305

Query: 801  -----KIKKF--------------------CQDARQFNIQIMPPSVNTP-CVDF-KVGDN 833
                 KI +                       +     I+++P  +      +F  VG+ 
Sbjct: 1306 DAIKSKINEIESLGNDATTKEKGMLTVLEVALEMYARGIKLLPVDIYKSDATEFIVVGEK 1365

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +   +AAI+G+G   A +I     +  F S ED   R    K+++ V+E+L   G+L+ 
Sbjct: 1366 TLLPPMAAIQGLGGNAAINIQNERKNGEFISKEDLRKRT---KISKTVIETLTNHGSLEN 1422

Query: 894  FGYSRMQL 901
                R QL
Sbjct: 1423 MSE-RNQL 1429



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 2/107 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   S+  ++++ A     AIAITD   +    +      +  I+ + 
Sbjct: 333 VELHAHTQMSSMDAICSVKKLVERAAKWGHSAIAITDHGVVQGFPDAMNAGKSNNIKILY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
           G +  +   D+L + +           +  +     G+    + ++ 
Sbjct: 393 GVEGYLVEDDSLIIEDANDKELSQTFVVFDI--ETTGFSNTNDKITE 437


>gi|299823038|ref|ZP_07054924.1| DNA polymerase III PolC [Listeria grayi DSM 20601]
 gi|299816567|gb|EFI83805.1| DNA polymerase III PolC [Listeria grayi DSM 20601]
          Length = 1470

 Score =  435 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 169/908 (18%), Positives = 306/908 (33%), Gaps = 193/908 (21%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                    +    A G + L +L+S+  + +   +  RI  S L+++  EGLI+ T  + 
Sbjct: 641  RARPFHATIYAQNAVGLKNLFKLISQSNI-NYFFRVPRIPRSQLKKL-REGLIIGTACNQ 698

Query: 153  GPIDRAFFFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAY 205
            G +  A      Q AE+    +       K ++   +   L R           +V++  
Sbjct: 699  GELFEAMMQKGMQEAERVAEFYDFIEVQPKPVYAPLIERELVRDEKALEEIIKNIVKVGE 758

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                P+VAT N  +    D     +L+        +        P+ + ++ SEM+  F+
Sbjct: 759  KTGKPVVATGNVHYKDPHDKIYRKILIFSQGG---ANPLNRAELPEVHFRSTSEMLEEFA 815

Query: 266  DLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
             L E  A E  V  +   +  ++   PI       + +      E+E+RN +        
Sbjct: 816  FLGEEKAEEIVVTNSNLVADWIEDVKPIKDELYTPKIEGA----EDEVRNMSYDMAHHLY 871

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
             +         +    RL+ EL  I    FS  +LI    ++ +  +   VG  RGS   
Sbjct: 872  GENL------PEIVEARLEKELKSIIGHGFSVIYLISHKLVKKSLIDGYLVG-SRGSVGS 924

Query: 384  SVTAYALTITDIDPLRFSLL---------------------------------------- 403
            S+ A  + IT+++PL    L                                        
Sbjct: 925  SLVATMMEITEVNPLAPHYLCPECKHAEFFDDGSIGSGFDLPDKKCPHCGAEYQKEGQDI 984

Query: 404  -FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K A   V 
Sbjct: 985  PFETFLGFKGDKVPDIDLNFSGEYQPVAHAYTKELFGEDYVYRAGTIGTVAEKTAFGFV- 1043

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            R  +       R                                 VDRL+       G+ 
Sbjct: 1044 RGYERDNGLTIRGA------------------------------EVDRLVA---GCTGVK 1070

Query: 523  RHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H  GI++      +    P+        S+   T F+   I    ++K D LG  
Sbjct: 1071 RTTGQHPGGIIVIPDYMDVYDFSPVQFPADATDSEWKTTHFDFHSIHD-NVLKLDILGHD 1129

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGIFQL 623
              T ++   D        +D   IP DD E   L               +  GTLGI + 
Sbjct: 1130 DPTAIRMLQDL-----SGIDPKTIPTDDEEVMKLFGSTESLGVKPEDIDSKTGTLGIPEF 1184

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +RQ LE  +P    +++ +  L     +                 +   LI   + 
Sbjct: 1185 GTRFVRQMLEQTKPTTFSELVQISGLSHGTDVWLG--------------NAEELIKNKIC 1230

Query: 684  ETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            E   VI  ++ +M       L S  +    + +R+   K + EEM++             
Sbjct: 1231 ELPDVIGCRDDIMVFLIYQGLESSLAFKIMESVRKG--KGLTEEMEQA------------ 1276

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            + +    + +    K   Y F K+HAAAY +++ + A+ K H+P+ F A   T+  D+ +
Sbjct: 1277 MIENKVPDWYIDSCKKIKYMFPKAHAAAYVLMAVRIAYFKVHHPLFFYATYFTVRADDFD 1336

Query: 801  ---------------------------------KIKKFCQDARQFNIQIMPPS-VNTPCV 826
                                              + +   +               +   
Sbjct: 1337 LTAMVNGREAVKAQMKEINSKGMEASTKEKNLLTVLEIANEMLARGYHFKKVDLYKSSAD 1396

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            +F +  + +     A+  +GT  A+ I+ A  +  F S ED   R    K+++ +++ L 
Sbjct: 1397 EFIIDGDALIPPFNAVPSLGTNVAKQIVAARENGEFLSKEDLQQR---GKVSKTIIQYLD 1453

Query: 887  FAGALDCF 894
              G L+  
Sbjct: 1454 DQGCLEGL 1461



 Score = 75.0 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++++  + A     AIAITD   + S  E        G++ I 
Sbjct: 368 VELHLHTPMSQMDATSSVDSLFKQAADWGHKAIAITDHAAVQSFPEAYNAGKKYGLKVIY 427

Query: 72  GC 73
           G 
Sbjct: 428 GV 429


>gi|116872751|ref|YP_849532.1| DNA polymerase III PolC [Listeria welshimeri serovar 6b str.
            SLCC5334]
 gi|123466238|sp|A0AIC1|DPO3_LISW6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116741629|emb|CAK20753.1| DNA polymerase III [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 1444

 Score =  435 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 173/935 (18%), Positives = 305/935 (32%), Gaps = 194/935 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            I+                   +G       P    +   T  G + L +L++   + +  
Sbjct: 588  IKDAKEMHDINFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLITMSNI-NYF 646

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLF 178
             +  RI  S L+++  EGLI+ T  S G +  A      Q AEK +  +       K ++
Sbjct: 647  YRVPRIPRSQLKKL-REGLIVGTACSQGELFEAMMQKGMQAAEKVVEFYDFIEIQPKPVY 705

Query: 179  GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               +   L R           +V++      P+VAT N  +    D     +L+      
Sbjct: 706  APLIERELVRDEKALEEILKNIVRVGEKAGKPVVATGNVHYKDPVDKIYRKILIHSQGG- 764

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFI 296
              +        PD + ++  EM+  F+ L E  A E  V  +      ++   PI     
Sbjct: 765  --ANPLNRAELPDVHFRSTDEMLKEFAFLGEEKAKEVVVTNSNLVVDWMEELKPIKDELY 822

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              + D      E+E+RN +         +         +    RL+ EL  I    F+  
Sbjct: 823  TPKIDGA----EDEVRNMSYDMAHQLYGENL------PEIVEARLEKELKSIIGHGFAVI 872

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------- 403
            +LI    ++ +  +   VG  RGS   S  A    IT+++PL    L             
Sbjct: 873  YLISHKLVKKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDG 931

Query: 404  ----------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                        FE FL      +PD D++F  D +     Y +
Sbjct: 932  SVGSGFDLPDKECPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTK 991

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G + V +  T G++  K A   V R  +   +   R                     
Sbjct: 992  EIFGEDYVFRAGTIGTVAEKTAFGYV-RNYERDMNMTIRGA------------------- 1031

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVR 550
                        +DRL+       G+ R    H  GI++      +    P+        
Sbjct: 1032 -----------EIDRLVA---GCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATD 1077

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
            S+   T F+   I    ++K D LG    T ++   D        +D   IP DD +   
Sbjct: 1078 SEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPDVMK 1131

Query: 611  LL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            L               +  GTLGI +  +  +RQ LE  +P    +++ +  L     + 
Sbjct: 1132 LFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHGTDVW 1191

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVL 713
                            +   LI     E   VI  ++ +M       L S  +    + +
Sbjct: 1192 LG--------------NAEELIKNKTCELPDVIGCRDDIMVFLIYQGLESSLAFKIMESV 1237

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+   K + EEM++             +        +    K   Y F K+HAAAY +++
Sbjct: 1238 RKG--KGLTEEMEEA------------MMANKVPLWYIESCKKIKYMFPKAHAAAYVLMA 1283

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVE--------------------------------- 800
             + A+ K HYP+ F A   T+  D+ +                                 
Sbjct: 1284 VRIAYFKVHYPLYFYATYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLL 1343

Query: 801  KIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
             + +   +               +   +F +  + +     AI  +GT  A+ I+ A  +
Sbjct: 1344 TVLEIANEMLARGFHFQKVDLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAAREN 1403

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              F S ED   R    K+++ +++ +   G L+  
Sbjct: 1404 GEFLSKEDLQQR---GKVSKTIIQYMDDQGCLEGL 1435



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401


>gi|239626437|ref|ZP_04669468.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516583|gb|EEQ56449.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1554

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 167/899 (18%), Positives = 301/899 (33%), Gaps = 175/899 (19%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
               +++L     G   L  LVS  +L +   +  RI  S L +   EGLI+ +   +G +
Sbjct: 720  TYHVIILAKNDIGRVNLYRLVSWSHL-EYYARRPRIPKSILDKY-REGLIIGSACEAGEL 777

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR----------YRESQVVQLAY 205
             +A    +      RL+ F      +   N       ++              ++V+L  
Sbjct: 778  YQALLRGAPDAEIARLVNFYDYLEIQPLGNNSFMLRDEKSTVKSEADLIEINKKIVELGM 837

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                 + AT +  FL  +D     ++MA                   YL+   EM+  FS
Sbjct: 838  QFNKLVCATCDVHFLDPQDEVYRRIIMAGQGFKDSDD------QAPLYLRTTEEMIKEFS 891

Query: 266  DLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
             L   +A E  V   R+ + + +  AP+ P       +D  K       ++A       L
Sbjct: 892  YLGPDKAHEVVVTNTRKVADMCEKIAPVRPDKCPPVIEDSDKTLTKICYDRAHEMYGENL 951

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                       +    RL+ EL+ I    F+  ++I    +  + ++   VG  RGS   
Sbjct: 952  ----------PKIVVDRLERELHSIITNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSVGS 1000

Query: 384  SVTAYALTITDIDPLR-------------------------------------------- 399
            S  A    IT+++PL                                             
Sbjct: 1001 SFVATMSGITEVNPLSPHYHCPNCRYYDFDSEEVRKFSGMAGCDMPDKSCPVCGTPLEKD 1060

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
             F + FE FL       PD D++F  + + +   Y +  +G  +  +  T G+L  K A 
Sbjct: 1061 GFDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHDYTEVIFGKGQTFRAGTIGTLADKTAF 1120

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V +                                   R  R  +  ++R++   Q  
Sbjct: 1121 GYVKKYY-------------------------------EERGTRKRNCEINRIV---QGC 1146

Query: 519  EGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDF 573
             G+ R    H  GI++      +    P+             T F+   I+   L+K D 
Sbjct: 1147 VGVRRTTGQHPGGIIVLPLGEEIYSFTPVQHPANDMTTSTVTTHFDYHSIDH-NLLKLDI 1205

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            LG    T+++   D +    V      IP D  E   L      LGI   +  G      
Sbjct: 1206 LGHDDPTMIRMLQDLIGIDPV----KDIPLDSREVMSLFQDTSALGILPDDIGGCPLGAL 1261

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQ 692
            G+     +  + ++   +P    ++V      +G +  + +   LI       Q  I  +
Sbjct: 1262 GVPEFGTDFAMQMLLDTKPKYFSDLVRIAGLAHGTDVWLGNAQTLIQEGKATIQTAICTR 1321

Query: 693  EQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            + +M       L  G S +  + +R+  G K + E +              ++     + 
Sbjct: 1322 DDIMVYLIAQGLEEGLSFTIMESVRKGKGLKPEWEEE--------------MTAHGVPDW 1367

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVE 800
            +    K   Y F K+HAAAY +++++ A+ K  YP+ + AA  ++              +
Sbjct: 1368 YIWSCKKIKYMFPKAHAAAYVMMAWRIAYCKIFYPLAYYAAFFSIRASAFSYEIMCQGRD 1427

Query: 801  KIKKF------------------------CQDARQFNIQIMPPSV-NTPCVDFKVGDNRI 835
            K++ +                         Q+        MP  +       F++ D ++
Sbjct: 1428 KLEYYLADYKKRADTLSKKEQDTLRDMRIVQEMYARGYDFMPLDIYRAKARHFQIIDGKL 1487

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              SL++I G+G   A  +++A  D  F S+EDF SR         ++      G L   
Sbjct: 1488 MPSLSSIDGLGEKAADAVVDAVKDGIFLSIEDFSSRAKVNGTLCTLM---ADMGLLKDL 1543



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQP 69
           + L  H+  S ++G   + +I+ +      PAIA+TD   +  A   +  A   G   + 
Sbjct: 445 IELHCHTKMSDMDGVSEVKSIIKRAKQWGMPAIAVTDHGCV-QAFPDANHALDKGDTFKI 503

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTV 96
           I G +  +       + N G   F   
Sbjct: 504 IYGVEGYLVDDTKQLVENPGGQGFEDT 530


>gi|289434601|ref|YP_003464473.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            seeligeri serovar 1/2b str. SLCC3954]
 gi|289170845|emb|CBH27387.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            seeligeri serovar 1/2b str. SLCC3954]
          Length = 1444

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 172/945 (18%), Positives = 315/945 (33%), Gaps = 192/945 (20%)

Query: 58   FSQKACAA-GIQPIIGCQLDIDMQDNLKMTN----QGKTPFPTVPSIVLLVSTAEGYQRL 112
            F  +A A  G + I   +   D+  +  + +                 +   TA G + L
Sbjct: 575  FDAEATAYLGWKLIKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNL 634

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             +L++   + +   +  RI  S L+++  EGLI+ T  S G +  A      Q AEK   
Sbjct: 635  FKLITMSNI-NYFYRVPRIPRSQLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAD 692

Query: 173  TF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
             +       K ++   +   L R           +V++      P+VAT N  +    D 
Sbjct: 693  FYDFIEIQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKAGKPVVATGNVHYKDPVDK 752

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSF 283
                +L+        +        PD + ++  EM+  F+ L E  A E  V  +     
Sbjct: 753  IYRKILIHSQGG---ANPLNRAELPDVHFRSTDEMLKEFAFLGEEKAKEVVVTNSNLVVD 809

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
             ++   PI       + D      E+E+RN + +       +         +    RL+ 
Sbjct: 810  WIEDLKPIKDELYTPKIDGA----EDEVRNMSYSMAHQLYGE------TLPEIVEARLEK 859

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL  I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL    L
Sbjct: 860  ELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYL 918

Query: 404  -----------------------------------------FERFLNPDRMSMPDFDIDF 422
                                                     FE FL      +PD D++F
Sbjct: 919  CPNCKHSEFFDDGSIGSGFDLPDKDCPHCETAYQKDGQDIPFETFLGFKGDKVPDIDLNF 978

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D +     Y +  +G + V +  T G++  K A   V                     
Sbjct: 979  SGDYQPVAHAYTKEIFGEDYVFRAGTIGTVAEKTAFGYVRNY------------------ 1020

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLS 540
                          R     +    +DRL+       G+ R    H  GI++      + 
Sbjct: 1021 -------------EREMNMTIRGAEIDRLVA---GCTGVKRTTGQHPGGIIVIPDYMDVY 1064

Query: 541  QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+        S+   T F+   I    ++K D LG    T ++   D        +D
Sbjct: 1065 DFTPVQFPADATDSEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDLSG-----ID 1118

Query: 598  LSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
               IP DD +   L               +  GTLGI +  +  +RQ LE  +P    ++
Sbjct: 1119 PKTIPTDDPDVMKLFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSEL 1178

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            + +  L     +          N +E I +    +  ++     ++++    +    L S
Sbjct: 1179 VQISGLSHGTDVWLG-------NAEELIKNKTCELPEVIGCRDDIMVF----LIYQGLES 1227

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
              +    + +R+   K + EEM++             +        +    K   Y F K
Sbjct: 1228 SLAFKIMESVRKG--KGLTEEMEEA------------MMANKVPLWYIESCKKIKYMFPK 1273

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------------------- 800
            +HAAAY +++ + A+ K H+P+ F A   T+  D+ +                       
Sbjct: 1274 AHAAAYVLMAVRIAYFKVHHPLFFYATYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGM 1333

Query: 801  ----------KIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
                       + +   +               +   +F +  + +     AI  +GT  
Sbjct: 1334 EASTKEKNLLTVLEIANEMLARGFHFQKVDLYKSSADEFIIDGDSLIPPFNAIPSLGTNV 1393

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            A+ I+ A  +  F S ED   R    K+++ +++ +   G L+  
Sbjct: 1394 AKQIVAARENGEFLSKEDLQQR---GKVSKTIIQYMDDQGCLEGL 1435



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401


>gi|168208108|ref|ZP_02634113.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens E str. JGS1987]
 gi|170660599|gb|EDT13282.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens E str. JGS1987]
          Length = 1449

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 173/897 (19%), Positives = 321/897 (35%), Gaps = 179/897 (19%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            +  I++L     G + L +LVS  +L D   +  R+  S + E   EGLI+ +   +G +
Sbjct: 624  LHHIIILAKNQTGIKNLYKLVSMAHL-DYFARRPRLPKSIITEY-REGLIIGSACEAGQL 681

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTH 207
             +A     +    K + +F      + +  +   +     +  D  RE   ++  L    
Sbjct: 682  YKAVLEGKTDGELKEIASFYDYLEIQPIQNNEFLIRKGNVKDEDELRELNRKIYDLGKEM 741

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
            + P+VAT +  FL   D     ++MA          D     P  Y +  +EM+  F  L
Sbjct: 742  DKPVVATCDCHFLDPNDEVFRRIIMA---GQGYGDADN---QPPLYFRTTNEMMKEFEYL 795

Query: 268  PE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
             E       +ENT +IA     +  +     P  IE          E E+RN  +  +  
Sbjct: 796  GEEACREVVIENTQKIADMVEAVKPIPDETFPPKIEG--------AEEEIRNMTMNKVHS 847

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
               +         +  ++RLD ELN I    ++  +LI    +  + ++   VG  RGS 
Sbjct: 848  IYGENL------PEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSLEDGYLVG-SRGSV 900

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++ L                                           
Sbjct: 901  GSSFVATMSDITEVNGLPPHYVCPNCKKSEFFLDGSISSGADLPDKNCPECGTKYIKDGH 960

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A   
Sbjct: 961  DIPFETFLGFEGDKEPDIDLNFSGEYQAVVHKYTEVLFGKGYVFKAGTIGTVAEKTAYGF 1020

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V + LQ                                R   ++   ++RL   +    G
Sbjct: 1021 VKKYLQE-------------------------------RGLVVSQAEIERL---TIGCTG 1046

Query: 521  LYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + R +  H  GI++   D  +    P+     DV +D+  T F+   I    L+K D LG
Sbjct: 1047 IKRTSGQHPGGIMVVPNDNEIYNFCPIQHPADDVNTDIITTHFDYHSI-SGRLLKLDILG 1105

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
                T+L+   D        +D   IP +D +   L T+   LG+ + E  G      G+
Sbjct: 1106 HDDPTVLRMLQDLTG-----LDPKTIPLNDPKVISLFTSPDALGVTKEEL-GCEVGSYGL 1159

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQ 694
                 + +  ++   +P    ++V  +   +G +  + +    I       +  I  ++ 
Sbjct: 1160 PEFGTKFVRQMLVDTQPKSFADLVRISGLSHGTDVWLNNAQYFIKEGYTTLKDCIATRDD 1219

Query: 695  VM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            +M       L    + +  + +R+   K + E+ +              + +    + + 
Sbjct: 1220 IMVYLMYKDLPPKTAFTIMEKVRKG--KGLSEDDEAL------------MREKNVPDWYI 1265

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK---------- 801
               K   Y F K HA AY +++ + A+ K +YP  +     T+  D+ +           
Sbjct: 1266 ESCKRIKYMFPKGHAVAYVMMAVRIAYYKVYYPEAYYTTYFTVRADDFDADLICKGEEAI 1325

Query: 802  -----------------------IKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYY 837
                                   I +   +  +  +  +      +    FK+ ++ I  
Sbjct: 1326 KAKMEELNSLGNNISVKEKGLLTILEISYEMYKRGLNFLKVDLYKSEATKFKIEEDGIRP 1385

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             L A++GVG   A+ I+E   +  F S ED   R    K+++ V+E+L   G L+  
Sbjct: 1386 PLNALQGVGDNAAKSIVECRINGEFISKEDLRIR---SKVSKTVIETLDNHGCLEGM 1439



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 36/86 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   + + I+++ A     A+AITD   + +  +    A    I+ I 
Sbjct: 350 VELHMHTTMSSMDAVTAASKIVERAAKFGHKAVAITDHGVVQAFPDAQIAAKKNNIKVIY 409

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + N  +  F    
Sbjct: 410 GVEGYLADNGTPIVINGHEESFDDEY 435


>gi|219667072|ref|YP_002457507.1| DNA polymerase III subunit alpha [Desulfitobacterium hafniense DCB-2]
 gi|219537332|gb|ACL19071.1| DNA polymerase III, alpha subunit [Desulfitobacterium hafniense
            DCB-2]
          Length = 1447

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 185/996 (18%), Positives = 326/996 (32%), Gaps = 213/996 (21%)

Query: 19   SYSLLEGALSLNNIL---------DKIAADQQP----AIAITDTNNLFSALE-FSQKACA 64
             Y+ L+       +                         A+ D                 
Sbjct: 529  DYTYLDTLSLAKELFPDYKTYKLGRIAKNLGIKVEVAHRALDDVGTTVKVFNIMVDMLKE 588

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++ +    L    +       + +         ++L     G + L +LVS  +L D 
Sbjct: 589  RGVETLEDIDLKAADE----AARKDEYKKLKTYHAIILAKDYTGLKNLYKLVSYSHL-DY 643

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR------LLTFKKLF 178
              +  RI  S L +  +EGLI+ +  S G + +A     S+   +        L  + L 
Sbjct: 644  FYKKPRILKS-LYKKYSEGLILGSACSEGELYQAILLGRSEEEIESIAEEYDYLEIQPLG 702

Query: 179  GDRLYVNLQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
             +   +  ++  G D       ++V L      P+VAT +  FL  ED     +L A   
Sbjct: 703  NNDYLIRTEQVPGKDYLMEINRKIVALGEKLNKPVVATGDVHFLDPEDEIYRRILEAGQG 762

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPR 294
                 Q       P  YLK   EM+  FS L E  A E  V      + + +  +PI   
Sbjct: 763  FKDADQ------QPPLYLKTTEEMLEEFSYLGEDKAYEVVVTNTNLIADLCEPISPISSE 816

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                  +  ++  +     KA            +         +QRLD EL+ I +  FS
Sbjct: 817  KATPHIEGCEETIKEIAFGKAHE----------LYGNPLPDIVQQRLDRELDSIIKNGFS 866

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF-------------- 400
              ++I    +  + ++   VG  RGS   SV AY   IT+++ L                
Sbjct: 867  VMYIIAQKLVWKSNEDGYLVG-SRGSVGSSVAAYMTGITEVNALPPHYRCPSCKYSDFSD 925

Query: 401  --------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                       + FE FL  +    PD D++F  + + +  +Y 
Sbjct: 926  HGPKIGFDLPDRECPVCGTQLDKDGIDIPFETFLGFNGDKEPDIDLNFSGEYQAKAHKYT 985

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            +  +G     +  T G++  K A   V +  +      ++                    
Sbjct: 986  EVIFGKGTTFKAGTIGTIADKTAFGYVRKYFEEKNRTANK-------------------- 1025

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYR---DV 549
                            ++ IS+   G+ R +  H  GI++    R + +  P+     D 
Sbjct: 1026 --------------AEIIRISKGCTGIKRTSGQHPGGIIVVPKGREIFEFCPVQHPADDP 1071

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
             SD+  T F+   I++  L+K D LG    T+++   D        VD   IP DD +T 
Sbjct: 1072 NSDIITTHFDYHSIDQ-NLLKLDILGHDDPTVIRMLQDITG-----VDPKTIPMDDKKTM 1125

Query: 610  HLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             L ++               GT GI +  +  +R  L    P   ED+I +  L     +
Sbjct: 1126 SLFSSTEALGVTPEQINSKVGTFGIPEFGTRFVRGMLLDTLPKAFEDLICISGLSHGTDV 1185

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADV 712
                             +   LID         +  ++++M            +    ++
Sbjct: 1186 WLG--------------NAKDLIDAGTVTLSEAVCTRDEIMTYLIRKGLPPNTAFKIMEI 1231

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +R+    K  +  + +         +  I             +   Y F K+HAAAY ++
Sbjct: 1232 VRKGKALKEPKWPEYETLMREHDVPEWYID----------SCRKIKYMFPKAHAAAYVMM 1281

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIK-------------------- 803
            +++ AW K H P+ + AA  T+     +         K+K                    
Sbjct: 1282 AFRIAWFKVHIPLAYYAAYFTIRAKAFDAEFMIFGKEKVKAKMKEIEALGNQAAPKDKDM 1341

Query: 804  ----KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                +   +  +     +P  +       F+V  N +   L +I G+GT  A  +  A+ 
Sbjct: 1342 YDDLEIVLEMYERGFSFLPIDIYASHATKFQVEGNALRPPLNSISGMGTIAAEGLYNAAQ 1401

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +KPF+SLED   R         +L         DC 
Sbjct: 1402 EKPFNSLEDVKKRGKIGNSTMELLSK------FDCL 1431



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 3/102 (2%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           + Q L K+   V L +H+  S ++      +++ +       AIAITD   + S  E  +
Sbjct: 327 IRQDLAKAKR-VELHLHTQMSQMDAMSGATDLIKRAMNWGMKAIAITDHGVVQSFPEAHK 385

Query: 61  KACAA--GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
                   ++ I G +  +       +T+       T   ++
Sbjct: 386 LLGRDNPNMKVIYGVEAYLAPDKKPSVTHPKGQSIDTTYCVL 427


>gi|331087674|ref|ZP_08336601.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330410366|gb|EGG89799.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 1520

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 175/945 (18%), Positives = 330/945 (34%), Gaps = 184/945 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F++      +  +       D   N                I++L     G   L +L
Sbjct: 639  VKFTEMLKKDQVGTLKEVNRYGDRNVNA-------IRKMPTHHIIILAKNDIGRYNLYQL 691

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +S+ ++     +  RI  S L E   EGL++ +   +G + +A     S     RL  F 
Sbjct: 692  ISQSHMT-YYARRPRIPKSLLNE-HREGLLIGSACEAGELHQAVHEKRSAQQIARLAEFY 749

Query: 176  KLFGDRLYVNLQRHRGYDRY-----------RESQVVQLAYTHELPLVATNNSLFLSEED 224
              +  +   N Q     +R               ++V+L      P+VAT +  FL+ +D
Sbjct: 750  DYYEIQPVGNNQFMIESERIADVNSIEDLQNINREIVELGEKFGKPVVATCDVHFLNPDD 809

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCS 282
                 ++MA          DR    P  +L+   EM+  FS L  A    + I    + +
Sbjct: 810  EVYRRIIMA---GKGFDDADR---QPPLFLRTTDEMLEEFSYLGAAKAREIVIDNPVKIA 863

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
             +++  +P+ P     +C  + +  + ELR+           +         +    RL+
Sbjct: 864  GMIEKISPVNP----NKCPPVIENSDQELRDICYRKAHEMYGEDL------PKQVSARLE 913

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             ELN I    ++  ++I    +  +  +   VG  RGS   S  A    IT+++PL    
Sbjct: 914  KELNSIISNGYAVMYIIAQKLVWKSNADGYLVG-SRGSVGSSFVATMAGITEVNPLSPHY 972

Query: 400  ------------------------------------------FSLLFERFLNPDRMSMPD 417
                                                      F + FE FL       PD
Sbjct: 973  YCSKCHYSDFESDEVRSFAGGCGYDMPDKKCPVCGEQLVKAGFDIPFETFLGFKGDKEPD 1032

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  D + +  +Y +  +G     +  T G+L  K A   V R     + Q  R C 
Sbjct: 1033 IDLNFSGDYQAKAHKYTEVLFGEGHTFKAGTIGTLADKTAYGFV-RNYYEEHEQRKRKC- 1090

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                                             +  +++   G+ R    H  GIV+   
Sbjct: 1091 --------------------------------EIERVTEGCTGIRRSTGQHPGGIVVLPH 1118

Query: 538  --PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
               +++  P+          +  T F+   I+   L+K D LG    T+++   D++   
Sbjct: 1119 GHDINEFTPVQHPANDMECGITTTHFDYHSIDH-NLLKLDILGHDDPTMIRTLEDYITSD 1177

Query: 593  GVKVDLS--------LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
             ++ + +         IP DD +   L      LGI   +  G +    G+     + +I
Sbjct: 1178 AMENEYNADHPFIATEIPLDDKDVIELFHGTEVLGIKPEDIDGCKIGSLGIPEFGTDFVI 1237

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ--- 700
             +V   +P  + +++  +   +G    + +   L+          I  ++ +M       
Sbjct: 1238 QMVQDTKPQTLSDLIRISGLSHGTNVWLGNAQELVKSGKATISTAICTRDDIMIYLINKG 1297

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            + S  + +  + +R+  G K + E                +      + +    K   Y 
Sbjct: 1298 VESALAFTIMESVRKGKGLKPEWEEA--------------MKAQDVPDWYIWSCKKISYM 1343

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAAS----------------------------- 791
            F K+HAAAY +++Y+ A+ K +YP+ + AA                              
Sbjct: 1344 FPKAHAAAYVMMAYRIAYCKINYPLAYYAAYFGIRADAFSYALMCQGKETLNYHIKQYKS 1403

Query: 792  ----MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVG 846
                ++ +  +V K  K  Q+      + +P  +       F++ D ++  SLA+I+G+G
Sbjct: 1404 KGDQLSKKEQDVLKDMKIVQEMYARGFEFVPIDIYRAKAKMFQIVDGKLMPSLASIEGMG 1463

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               A  + EA+ D  + SL+DF  R    K    ++  L   G L
Sbjct: 1464 DKAAEAVEEAAKDGAYLSLDDFRQRTKVSKTVIDLMAELGLFGDL 1508



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
           V L  H+  S ++G   + +I+ +      PAIAITD   
Sbjct: 394 VELHCHTKMSDMDGVSEVKDIVKRAHDWGHPAIAITDHGV 433


>gi|169342745|ref|ZP_02863785.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens C str. JGS1495]
 gi|169299251|gb|EDS81321.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens C str. JGS1495]
          Length = 1449

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 172/897 (19%), Positives = 321/897 (35%), Gaps = 179/897 (19%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            +  I++L     G + L +LVS  +L D   +  R+  S + E   EGLI+ +   +G +
Sbjct: 624  LHHIIILAKNQTGIKNLYKLVSMAHL-DYFARRPRLPKSIITEY-REGLIIGSACEAGQL 681

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTH 207
             +A     +    K + +F      + +  +   +     +  +  RE   ++  L    
Sbjct: 682  YKAVLEGKTDGELKEIASFYDYLEIQPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEM 741

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
            + P+VAT +  FL   D     ++MA          D     P  Y +  +EM+  F  L
Sbjct: 742  DKPVVATCDCHFLDPNDEVFRRIIMA---GQGYGDADN---QPPLYFRTTNEMMKEFEYL 795

Query: 268  PE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
             E       +ENT +IA     +  +     P  IE          E E+RN  +  +  
Sbjct: 796  GEEACREVVIENTQKIADMVEAVKPIPDETFPPKIEG--------AEEEIRNMTMNKVHS 847

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
               +         +  ++RLD ELN I    ++  +LI    +  + ++   VG  RGS 
Sbjct: 848  IYGENL------PEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSLEDGYLVG-SRGSV 900

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++ L                                           
Sbjct: 901  GSSFVATMSDITEVNGLPPHYVCPNCKKSEFFLDGSISSGADLPDKNCPECGTKYIKDGH 960

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A   
Sbjct: 961  DIPFETFLGFEGDKEPDIDLNFSGEYQAVVHKYTEVLFGKGYVFKAGTIGTVAEKTAYGF 1020

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V + LQ                                R   ++   ++RL   +    G
Sbjct: 1021 VKKYLQE-------------------------------RGLVVSQAEIERL---TIGCTG 1046

Query: 521  LYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + R +  H  GI++   D  +    P+     DV +D+  T F+   I    L+K D LG
Sbjct: 1047 IKRTSGQHPGGIMVVPNDNEIYNFCPIQHPADDVNTDIITTHFDYHSI-SGRLLKLDILG 1105

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
                T+L+   D        +D   IP +D +   L T+   LG+ + E  G      G+
Sbjct: 1106 HDDPTVLRMLQDLTG-----LDPKTIPLNDPKVISLFTSPDALGVTKEEL-GCEVGSYGL 1159

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQ 694
                 + +  ++   +P    ++V  +   +G +  + +    I       +  I  ++ 
Sbjct: 1160 PEFGTKFVRQMLVDTQPKSFADLVRISGLSHGTDVWLNNAQYFIKEGYTTLKDCIATRDD 1219

Query: 695  VM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            +M       L    + +  + +R+   K + E+ +              + +    + + 
Sbjct: 1220 IMVYLMYKDLPPKTAFTIMEKVRKG--KGLSEDDEAL------------MREKNVPDWYI 1265

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK---------- 801
               K   Y F K HA AY +++ + A+ K +YP  +     T+  D+ +           
Sbjct: 1266 ESCKRIKYMFPKGHAVAYVMMAVRIAYYKVYYPEAYYTTYFTVRADDFDADLICKGEEAI 1325

Query: 802  -----------------------IKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYY 837
                                   I +   +  +  +  +      +    FK+ ++ I  
Sbjct: 1326 KAKMEELNSLGNNISVKEKGLLTILEISYEMYKRGLNFLKVDLYKSEATKFKIEEDGIRP 1385

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             L A++GVG   A+ I+E   +  F S ED   R    K+++ V+E+L   G L+  
Sbjct: 1386 PLNALQGVGDNAAKSIVECRVNGEFISKEDLRIR---SKVSKTVIETLDNHGCLEGM 1439



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 36/86 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   + + I+++ A     A+AITD   + +  +    A    I+ I 
Sbjct: 350 VELHMHTTMSSMDAVTAASKIVERAAKFGHKAVAITDHGVVQAFPDAQIAAKKNNIKVIY 409

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + +  +  F    
Sbjct: 410 GVEGYLADNGTPIVISGHEESFDDEY 435


>gi|73662813|ref|YP_301594.1| DNA polymerase III PolC [Staphylococcus saprophyticus subsp.
            saprophyticus ATCC 15305]
 gi|123642441|sp|Q49X49|DPO3_STAS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|72495328|dbj|BAE18649.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
            saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 1438

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 173/950 (18%), Positives = 333/950 (35%), Gaps = 213/950 (22%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +    +      N  ++N+          + L+V   +G + L ++VS   L+    
Sbjct: 582  LKQLEALGVHNHQDINTSLSNEDAYKRARPNHVTLIVQNQDGLKNLFKIVS-ASLVQYYY 640

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EG+++ +    G +  A         E+    +         L+ 
Sbjct: 641  RTPRIPRSLLDEY-REGILVGSACDEGEVFTAVMQKDQSQVERIAKYYDFIEVQPPALYQ 699

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R         +++++    + +P++AT N+ +L+E D  A  +L+A      
Sbjct: 700  DLIDRELVRDNETLHEIYNRLIRAGDVNNIPVIATGNAHYLNEHDAIARKILIAAQPGNP 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILP 293
            +++   P+     + +   EM+     L E       ++NT ++A +   ++ +   +  
Sbjct: 760  LNRSTLPKA----HFRTTDEMLDELHFLGEEKAYELVVQNTNDLADKIERVVPIKDELFT 815

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
              +E   ++I+  E +    KA+ G                Q    RL+ EL  I    F
Sbjct: 816  PRMEGANEEIR--EMSYDNAKALYG------------DDLPQIVIDRLEKELESIIGNGF 861

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------- 400
            S  +LI    ++ +  +   VG  RGS   S  A    IT+++PL               
Sbjct: 862  SVIYLISQRLVKKSLNDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPECKQSEFF 920

Query: 401  ----------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                                         + FE FL      +PD D++F  + + E   
Sbjct: 921  DDGSVGSGFDLPDKKCESCGCDLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPEAHN 980

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPV 487
            Y +  +G ++V +  T G++  K A   V      + +    +++DRL K          
Sbjct: 981  YTKELFGEDKVFRAGTIGTVAEKTAFGFVKGYLNDQGIHKRGAEIDRLVK---------- 1030

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPM 545
                                            G+ R    H  GI++      +    P+
Sbjct: 1031 -----------------------------GCTGVKRTTGQHPGGIIVVPDYMDIYDFTPV 1061

Query: 546  Y---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                 D  S    T F+   I    ++K D LG    T+++   D        +D   IP
Sbjct: 1062 QFPADDQGSSWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIP 1115

Query: 603  FDDHETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             DD ET                +L   GT G+ +  +  +RQ LE  +P    +++ +  
Sbjct: 1116 VDDKETMGIFSSPEPLGVTSDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVRISG 1175

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGY 705
            L     +                 +   LI     +   VI  ++ +M       L    
Sbjct: 1176 LSHGTDVWLG--------------NAQDLIRSGKCDLASVICCRDDIMVYLMYNGLEPSL 1221

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +    + +R+   K + ++M            +  +   +     +   K   Y F K+H
Sbjct: 1222 AFKTMEFVRKG--KGLTDDM-----------VEAMVDNEVPDWYLDSCRKI-KYMFPKAH 1267

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK---------------------- 803
            AAAY +++ + A+ K HYP+ + A+  T+   + + I                       
Sbjct: 1268 AAAYVLMAVRIAYFKVHYPLYYYASYFTVRASDFDLISMIKDKESIRNTVNDMYSRYMDL 1327

Query: 804  -----------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTAR 851
                       +   +  Q   ++ P S+      +F +  + +     A+ G+G   A+
Sbjct: 1328 AKKEKDTLTVLEIMNEMAQRGYRMQPISLEKSKAFEFIIEGDTLIPPFIAVPGLGENVAQ 1387

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             I+EA  + PF S ED   +     L+++V+E L   G+L      + QL
Sbjct: 1388 RIVEARDEGPFLSKEDLNKKA---GLSQKVIEYLDELGSLPNL-PDKAQL 1433



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 1/100 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  ++++ +D+ A     AIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTSMSQMDGIPNISDYVDQAAKWGHKAIAVTDHNVVQAFPDAHSAAEKNGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           G +  + + D + +  + K       + V+      G   
Sbjct: 396 GMEGML-VDDGVPIAYKPKDCDLKTATYVVFDVETTGLSN 434


>gi|317500099|ref|ZP_07958334.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898584|gb|EFV20620.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 1520

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 175/945 (18%), Positives = 330/945 (34%), Gaps = 184/945 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F++      +  +       D   N                I++L     G   L +L
Sbjct: 639  VKFTEMLKKDQVGTLKEVNRYGDRNVNA-------IRKMPTHHIIILAKNDIGRYNLYQL 691

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +S+ ++     +  RI  S L E   EGL++ +   +G + +A     S     RL  F 
Sbjct: 692  ISQSHMT-YYARRPRIPKSLLNE-HREGLLIGSACEAGELYQAVHEKRSAQQIARLAEFY 749

Query: 176  KLFGDRLYVNLQRHRGYDRY-----------RESQVVQLAYTHELPLVATNNSLFLSEED 224
              +  +   N Q     +R               ++V+L      P+VAT +  FL+ +D
Sbjct: 750  DYYEIQPVGNNQFMIESERIADVNSIEDLQNINREIVELGEKFGKPVVATCDVHFLNPDD 809

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCS 282
                 ++MA          DR    P  +L+   EM+  FS L  A    + I    + +
Sbjct: 810  EVYRRIIMA---GKGFDDADR---QPPLFLRTTDEMLEEFSYLGAAKAREIVIDNPVKIA 863

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
             +++  +P+ P     +C  + +  + ELR+           +         +    RL+
Sbjct: 864  GMIEKISPVNP----NKCPPVIENSDQELRDICYRKAHEMYGEDL------PKQVSARLE 913

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             ELN I    ++  ++I    +  +  +   VG  RGS   S  A    IT+++PL    
Sbjct: 914  KELNSIISNGYAVMYIIAQKLVWKSNADGYLVG-SRGSVGSSFVATMAGITEVNPLSPHY 972

Query: 400  ------------------------------------------FSLLFERFLNPDRMSMPD 417
                                                      F + FE FL       PD
Sbjct: 973  YCSKCHYSDFESDEVRSFAGGCGYDMPDKKCPVCGEQLVKAGFDIPFETFLGFKGDKEPD 1032

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  D + +  +Y +  +G     +  T G+L  K A   V R     + Q  R C 
Sbjct: 1033 IDLNFSGDYQAKAHKYTEVLFGEGHTFKAGTIGTLADKTAYGFV-RNYYEEHEQRKRKC- 1090

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                                             +  +++   G+ R    H  GIV+   
Sbjct: 1091 --------------------------------EIERVTEGCTGIRRSTGQHPGGIVVLPH 1118

Query: 538  --PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
               +++  P+          +  T F+   I+   L+K D LG    T+++   D++   
Sbjct: 1119 GHDINEFTPVQHPANDMECGITTTHFDYHSIDH-NLLKLDILGHDDPTMIRTLEDYITSD 1177

Query: 593  GVKVDLS--------LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
             ++ + +         IP DD +   L      LGI   +  G +    G+     + +I
Sbjct: 1178 AMENEYNADHPFIATEIPLDDKDVIELFHGTEVLGIKPEDIDGCKIGSLGIPEFGTDFVI 1237

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ--- 700
             +V   +P  + +++  +   +G    + +   L+          I  ++ +M       
Sbjct: 1238 QMVQDTKPQTLSDLIRISGLSHGTNVWLGNAQELVKSGKATISTAICTRDDIMIYLINKG 1297

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            + S  + +  + +R+  G K + E                +      + +    K   Y 
Sbjct: 1298 VESALAFTIMESVRKGKGLKPEWEEA--------------MKAQDVPDWYIWSCKKISYM 1343

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAAS----------------------------- 791
            F K+HAAAY +++Y+ A+ K +YP+ + AA                              
Sbjct: 1344 FPKAHAAAYVMMAYRIAYCKINYPLAYYAAYFGIRADAFSYALMCQGKETLNYHIKQYKS 1403

Query: 792  ----MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVG 846
                ++ +  +V K  K  Q+      + +P  +       F++ D ++  SLA+I+G+G
Sbjct: 1404 KGDQLSKKEQDVLKDMKIVQEMYARGFEFVPIDIYRAKAKMFQIVDGKLMPSLASIEGMG 1463

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               A  + EA+ D  + SL+DF  R    K    ++  L   G L
Sbjct: 1464 DKAAEAVEEAAKDGAYLSLDDFRQRTKVSKTVIDLMAELGLFGDL 1508



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
           V L  H+  S ++G   + +I+ +      PAIAITD   
Sbjct: 394 VELHCHTKMSDMDGVSEVKDIVKRAHDWGHPAIAITDHGV 433


>gi|182417583|ref|ZP_02948906.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum 5521]
 gi|237668138|ref|ZP_04528122.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum E4 str. BoNT E BL5262]
 gi|182378596|gb|EDT76124.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum 5521]
 gi|237656486|gb|EEP54042.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum E4 str. BoNT E BL5262]
          Length = 1450

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 159/907 (17%), Positives = 309/907 (34%), Gaps = 181/907 (19%)

Query: 90   KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
                      ++L  T  G + L +++S  ++ D  ++  R   S + E+  EGLI+ + 
Sbjct: 620  DIKKQPTYHAIILAKTQAGLKNLYKMISTAHI-DNFQRRPRTPKSLIAEM-REGLIIGSA 677

Query: 150  GSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYR--ESQVV 201
              +G + +A     S    K ++ F      + +  +   +     +  +  +    ++ 
Sbjct: 678  CEAGEVYKAVLDGKSDEELKAIMEFYDYLEIQPIANNLFLIEKGMVKDENELKTINKKIY 737

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
             +    +   VAT +  F+  +D     +LMA        +       P  Y +   EM+
Sbjct: 738  DIGKECDKMTVATCDVHFMDPKDEAFRRILMAGQGFKDADK------QPPLYFRTTEEML 791

Query: 262  SIFSDLPEALENTVEI--ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
              F+ L   + N V I    + +  + +  PI       + +  +++  N   NK  +  
Sbjct: 792  KEFAYLGSEIANEVVIENTNKIADSIDIIKPIPDETFPPKIEGAEEDIRNMTMNKVHSIY 851

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
               L           +  ++RLD ELN I    ++  +LI    +  +  +   VG  RG
Sbjct: 852  GENL----------PEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSNDDGYLVG-SRG 900

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S  A    IT+++ L                                         
Sbjct: 901  SVGSSFVATMSDITEVNGLPPHYVCPNCKKSEFFMDGSISSGADLDDKDCPECGTPYKKD 960

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               + FE FL  +    PD D++F  + +  V RY +  +G     +  T G++  K A 
Sbjct: 961  GHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHRYCEVLFGKGHTFKAGTIGTVAEKTAY 1020

Query: 459  RDVGRALQ-----MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
              V + L      +P ++VDRL                                      
Sbjct: 1021 GYVKKYLDERGIVVPQAEVDRLT------------------------------------- 1043

Query: 514  ISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGL 568
                  G+ R    H  GI++   D  +    P+         D+  T F+   I    L
Sbjct: 1044 --IGCTGIKRTTGQHPGGIMVVPADNEIYNFCPIQHPADDNDTDVITTHFDYHSI-SGRL 1100

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            +K D LG    T+L+   D        +D   IP +D +   L T+   LG+ + E    
Sbjct: 1101 LKLDILGHDDPTVLRMLQDITG-----LDPKTIPLNDKKVLSLFTSPEALGVTKEELE-C 1154

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQG 687
                 G+     + +  ++   +P    ++V  +   +G +  ++     I       + 
Sbjct: 1155 EVGSYGLPEFGTKFVRQMLVDTQPKTFSDLVRISGLSHGTDVWLNNAQYYIKEGFTTLRE 1214

Query: 688  VIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
             I  ++ +M       +    + +  + +R+   K + E+ +              + K 
Sbjct: 1215 CIATRDDIMVYLMYKDIPPKTAFTIMEKVRKG--KGLSEDDETL------------MKKH 1260

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---- 800
                 +    K   Y F K HA AY +++ + A+ K +YP  + A   T+  D+ +    
Sbjct: 1261 NVPEWYIGSCKKIKYMFPKGHAVAYVMMAVRIAYFKVYYPQAYYATYFTVRADDFDANLI 1320

Query: 801  ---------KIKKFCQ--------------------DARQFNIQIMPPS-VNTPCVDFKV 830
                     K+++                       +A +  +  +      +  V F +
Sbjct: 1321 CLGEGAVHAKLQELYALGNNASVKDKGMITVLELCFEAYKRGVNFLRVDLYKSDAVKFII 1380

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             D  +   L AI G+    A+ I+EA  +  F S ED   R     +++  +E L   G 
Sbjct: 1381 EDGNLRPPLNAIPGIADNAAKGIVEARKNGEFISKEDLRIRA---GVSKTAIEGLTSHGC 1437

Query: 891  LDCFGYS 897
            L+    +
Sbjct: 1438 LEGMSET 1444



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 3   QYLEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           + ++ +P   V L +H++ S ++G  +   ++ + A+   PAIAITD   + +  E    
Sbjct: 342 EKMDGAPKKRVELHLHTTMSSMDGMTAPGKLIGRAASWGHPAIAITDHGGVQAYPEAQSA 401

Query: 62  ACAAGIQPIIGC 73
           A   GI+ + G 
Sbjct: 402 AKKHGIKVLYGV 413


>gi|153814386|ref|ZP_01967054.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756]
 gi|145848782|gb|EDK25700.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756]
          Length = 1459

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 175/945 (18%), Positives = 330/945 (34%), Gaps = 184/945 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F++      +  +       D   N                I++L     G   L +L
Sbjct: 578  VKFTEMLKKDQVGTLKEVNRYGDRNVNA-------IRKMPTHHIIILAKNDIGRYNLYQL 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +S+ ++     +  RI  S L E   EGL++ +   +G + +A     S     RL  F 
Sbjct: 631  ISQSHMT-YYARRPRIPKSLLNE-HREGLLIGSACEAGELYQAVHEKRSAQQIARLAEFY 688

Query: 176  KLFGDRLYVNLQRHRGYDRY-----------RESQVVQLAYTHELPLVATNNSLFLSEED 224
              +  +   N Q     +R               ++V+L      P+VAT +  FL+ +D
Sbjct: 689  DYYEIQPVGNNQFMIESERIADVNSIEDLQNINREIVELGEKFGKPVVATCDVHFLNPDD 748

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCS 282
                 ++MA          DR    P  +L+   EM+  FS L  A    + I    + +
Sbjct: 749  EVYRRIIMA---GKGFDDADR---QPPLFLRTTDEMLEEFSYLGAAKAREIVIDNPVKIA 802

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
             +++  +P+ P     +C  + +  + ELR+           +         +    RL+
Sbjct: 803  GMIEKISPVNP----NKCPPVIENSDQELRDICYRKAHEMYGEDL------PKQVSARLE 852

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             ELN I    ++  ++I    +  +  +   VG  RGS   S  A    IT+++PL    
Sbjct: 853  KELNSIISNGYAVMYIIAQKLVWKSNADGYLVG-SRGSVGSSFVATMAGITEVNPLSPHY 911

Query: 400  ------------------------------------------FSLLFERFLNPDRMSMPD 417
                                                      F + FE FL       PD
Sbjct: 912  YCSKCHYSDFESDEVRSFAGGCGYDMPDKKCPVCGEQLVKAGFDIPFETFLGFKGDKEPD 971

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  D + +  +Y +  +G     +  T G+L  K A   V R     + Q  R C 
Sbjct: 972  IDLNFSGDYQAKAHKYTEVLFGEGHTFKAGTIGTLADKTAYGFV-RNYYEEHEQRKRKC- 1029

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                                             +  +++   G+ R    H  GIV+   
Sbjct: 1030 --------------------------------EIERVTEGCTGIRRSTGQHPGGIVVLPH 1057

Query: 538  --PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
               +++  P+          +  T F+   I+   L+K D LG    T+++   D++   
Sbjct: 1058 GHDINEFTPVQHPANDMECGITTTHFDYHSIDH-NLLKLDILGHDDPTMIRTLEDYITSD 1116

Query: 593  GVKVDLS--------LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
             ++ + +         IP DD +   L      LGI   +  G +    G+     + +I
Sbjct: 1117 AMENEYNADHPFIATEIPLDDKDVIELFHGTEVLGIKPEDIDGCKIGSLGIPEFGTDFVI 1176

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ--- 700
             +V   +P  + +++  +   +G    + +   L+          I  ++ +M       
Sbjct: 1177 QMVQDTKPQTLSDLIRISGLSHGTNVWLGNAQELVKSGKATISTAICTRDDIMIYLINKG 1236

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            + S  + +  + +R+  G K + E                +      + +    K   Y 
Sbjct: 1237 VESALAFTIMESVRKGKGLKPEWEEA--------------MKAQDVPDWYIWSCKKISYM 1282

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAAS----------------------------- 791
            F K+HAAAY +++Y+ A+ K +YP+ + AA                              
Sbjct: 1283 FPKAHAAAYVMMAYRIAYCKINYPLAYYAAYFGIRADAFSYALMCQGKETLNYHIKQYKS 1342

Query: 792  ----MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVG 846
                ++ +  +V K  K  Q+      + +P  +       F++ D ++  SLA+I+G+G
Sbjct: 1343 KGDQLSKKEQDVLKDMKIVQEMYARGFEFVPIDIYRAKAKMFQIVDGKLMPSLASIEGMG 1402

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               A  + EA+ D  + SL+DF  R    K    ++  L   G L
Sbjct: 1403 DKAAEAVEEAAKDGAYLSLDDFRQRTKVSKTVIDLMAELGLFGDL 1447



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
           V L  H+  S ++G   + +I+ +      PAIAITD   
Sbjct: 333 VELHCHTKMSDMDGVSEVKDIVKRAHDWGHPAIAITDHGV 372


>gi|313633403|gb|EFS00239.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            seeligeri FSL N1-067]
          Length = 1452

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 172/945 (18%), Positives = 314/945 (33%), Gaps = 192/945 (20%)

Query: 58   FSQKACAA-GIQPIIGCQLDIDMQDNLKMTN----QGKTPFPTVPSIVLLVSTAEGYQRL 112
            F  +A A  G + I   +   D+  +  + +                 +   TA G + L
Sbjct: 583  FDAEATAYLGWKLIKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNL 642

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             +L++   + +   +  RI  S L ++  EGLI+ T  S G +  A      Q AEK   
Sbjct: 643  FKLITMSNI-NYFYRVPRIPRSQLNKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAD 700

Query: 173  TF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
             +       K ++   +   L R           +V++      P+VAT N  +    D 
Sbjct: 701  FYDFIEIQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKAGKPVVATGNVHYKDPVDK 760

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSF 283
                +L+        +        PD + ++  EM+  F+ L E  A E  V  +     
Sbjct: 761  IYRKILIHSQGG---ANPLNRAELPDVHFRSTDEMLKEFAFLGEEKAKEVVVTNSNLVVD 817

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
             ++   PI       + D      E+E+RN + +       +         +    RL+ 
Sbjct: 818  WIEDLKPIKDELYTPKIDGA----EDEVRNMSYSMAHQLYGE------TLPEIVEARLEK 867

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL  I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL    L
Sbjct: 868  ELKSIIGHGFAVIYLISHKLVKKSLLDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYL 926

Query: 404  -----------------------------------------FERFLNPDRMSMPDFDIDF 422
                                                     FE FL      +PD D++F
Sbjct: 927  CPNCKHSEFFDDGSIGSGFDLPDKDCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNF 986

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D +     Y +  +G + V +  T G++  K A   V                     
Sbjct: 987  SGDYQPVAHAYTKEIFGEDYVFRAGTIGTVAEKTAFGYVRNY------------------ 1028

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLS 540
                          R     +    +DRL+       G+ R    H  GI++      + 
Sbjct: 1029 -------------EREMNMTIRGAEIDRLVA---GCTGVKRTTGQHPGGIIVIPDYMDVY 1072

Query: 541  QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+        S+   T F+   I    ++K D LG    T ++   D        +D
Sbjct: 1073 DFTPVQFPADATDSEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDL-----SGID 1126

Query: 598  LSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
               IP DD +   L               +  GTLGI +  +  +RQ LE  +P    ++
Sbjct: 1127 PKTIPTDDPDVMKLFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSEL 1186

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            + +  L     +          N +E I +    +  ++     ++++    +    L S
Sbjct: 1187 VQISGLSHGTDVWLG-------NAEELIKNKTCELPEVIGCRDDIMVF----LIYQGLES 1235

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
              +    + +R+   K + EEM++             +        +    K   Y F K
Sbjct: 1236 SLAFKIMESVRKG--KGLTEEMEEA------------MMANKVPLWYIESCKKIKYMFPK 1281

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------------------- 800
            +HAAAY +++ + A+ K H+P+ F A   T+  D+ +                       
Sbjct: 1282 AHAAAYVLMAVRIAYFKVHHPLFFYATYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGM 1341

Query: 801  ----------KIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
                       + +   +               +   +F +  + +     AI  +GT  
Sbjct: 1342 EASTKEKNLLTVLEIANEMLARGFHFQKVDLYKSSADEFIIDGDSLIPPFNAIPSLGTNV 1401

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            A+ I+ A  +  F S ED   R    K+++ +++ +   G L+  
Sbjct: 1402 AKQIVAARENGEFLSKEDLQQR---GKVSKTIIQYMDDQGCLEGL 1443



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 350 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 409


>gi|255655317|ref|ZP_05400726.1| DNA polymerase III PolC-type [Clostridium difficile QCD-23m63]
          Length = 1432

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 179/968 (18%), Positives = 344/968 (35%), Gaps = 189/968 (19%)

Query: 36   IAADQQPAI----AITDTNNLFSAL-EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGK 90
                  P +    A+ D         +F Q     G + +      +   D  K+     
Sbjct: 549  AKELGIPLLNHHRAVDDAEATALIFNKFLQMLTEKGAKTLSDVNNILGKIDYTKL----- 603

Query: 91   TPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGG 150
                +   I L+   + G + L +++S  ++ +   ++ RI  S L E   EGLI+ +  
Sbjct: 604  ----STNHITLIAKNSVGIKNLYKIISDAHV-NHFFRAPRILRSVLNEY-KEGLIIGSAC 657

Query: 151  SSGPIDRAFFFNSSQVAEKRLLTFKK------LFGDRLYVNLQRHRGYDRYRE--SQVVQ 202
             +G + +A   N S    K+++          +  +R  ++    +  +  RE   +++ 
Sbjct: 658  EAGVVFQAVKKNVSDEEMKKIIDLYDYIEVMPIDNNRFMIDKGEVKDEEELRELNRKLID 717

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
             A       VAT +  FL + +     VL       V  ++           +   EM+ 
Sbjct: 718  TAKKFNKIPVATGDVHFLDKHEAILRKVLKYSQGFKVDEEETYLH------FRTTDEMLE 771

Query: 263  IFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
             FS L E  A E  VE +   + +++   PI     +     I +  + ELR        
Sbjct: 772  EFSYLGEELAYEVVVENSNLIADMVEDIKPI----PDDTYPPIIEGSDVELREMCYKKA- 826

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
             R+    I      +  ++RLD ELN I    ++  ++I    +  +  +   VG  RGS
Sbjct: 827  KRIYGDPI-----PEIVQKRLDRELNSIISNGYAVMYIIAQKLVAKSLSDGYLVG-SRGS 880

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S  A    IT+++PL                                          
Sbjct: 881  VGSSFAATMSDITEVNPLPAHYICENEDCKYSFFYEIGEWGSGVDLPDKDCPKCGRKLAK 940

Query: 400  --FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
                + FE FL  +    PD D++F  + +  + +Y +  +G   V +  T G++  K A
Sbjct: 941  NGHDIPFEVFLGFEGDKEPDIDLNFSGNYQPTIHKYTEELFGEGYVYRAGTIGTVAEKTA 1000

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
                 +     Y + + +   +PN                             +L +S  
Sbjct: 1001 FGYARK-----YVEENNIS--VPN---------------------------AEVLRLSNG 1026

Query: 518  LEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFD 572
              G+ R +  H  G+++      +    P+          +  T F+   I    ++K D
Sbjct: 1027 CTGVKRTSGQHPGGVMVIPDYKDVYDFTPIQYPANDTSCGVITTHFDYHSI-SGRILKLD 1085

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
             LG    T+++   D        ++++ IP DD ET  L T+   LG+   E +      
Sbjct: 1086 ILGHDGPTIIRMLEDMTG-----INITEIPLDDKETMSLFTSTEALGVTPEEIN-CPIGC 1139

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE-KIVSIHPLIDPMLKETQGVIIY 691
              +     + +  ++   +P     +V  +   +G +  + +   L+   +   + VI  
Sbjct: 1140 LAVPEFGTKFVRQMLLDTKPTTFAELVRISGLSHGTDVWVNNAQDLVREDIVGLKDVIST 1199

Query: 692  QEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++ +M            S +  + +R+  G K            I+   KN + +    +
Sbjct: 1200 RDDIMNYLIFKGLPPKMSFTIMESVRKGKGLK---------PEHIAEMKKNNVPEWYIGS 1250

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------- 800
              ++      Y F K+HA AY + S++ A+ K HYP  F A   T ++++ +        
Sbjct: 1251 CKKI-----KYMFPKAHAVAYVMTSFRIAYCKVHYPEAFYATYFTTKVEDFDADLIVKGL 1305

Query: 801  -----KIKKF--------------------CQDARQFNIQIMPPSVNTP-CVDF-KVGDN 833
                 KI +                       +     I+++P  +      +F  VG+ 
Sbjct: 1306 DAIKSKINEIESLGNDATTKEKGMLTVLEVALEMYARGIKLLPVDIYKSDATEFIIVGEK 1365

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +   +AAI+G+G   A +I     +  F S ED   R    K+++ V+E+L   G+L+ 
Sbjct: 1366 TLLPPMAAIQGLGGNAAINIQTERKNGEFISKEDLRKRT---KISKTVIETLTNHGSLEN 1422

Query: 894  FGYSRMQL 901
                R QL
Sbjct: 1423 MSE-RNQL 1429



 Score = 81.2 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 42/107 (39%), Gaps = 2/107 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   S+  ++++ A    PAIAITD   +    +      +  I+ + 
Sbjct: 333 VELHAHTQMSSMDAICSVKKLVERAAKWGHPAIAITDHGVVQGFPDAMNAGKSNNIKILY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
           G +  +   D+L + +           +  +     G+    + ++ 
Sbjct: 393 GVEGYLVEDDSLIIEDANDKELSQTFVVFDI--ETTGFSNTNDKITE 437


>gi|89897057|ref|YP_520544.1| hypothetical protein DSY4311 [Desulfitobacterium hafniense Y51]
 gi|89336505|dbj|BAE86100.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1447

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 184/996 (18%), Positives = 326/996 (32%), Gaps = 213/996 (21%)

Query: 19   SYSLLEGALSLNNIL---------DKIAADQQP----AIAITDTNNLFSALE-FSQKACA 64
             Y+ L+       +                         A+ D                 
Sbjct: 529  DYTYLDTLSLAKELFPDYKTYKLGRIAKNLGIKVEVAHRALDDVGTTVKVFNIMVDMLKE 588

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++ +    L    +       + +         ++L     G + L +LVS  +L D 
Sbjct: 589  RGVETLEDIDLKAADE----AARKDEYKKLKTYHAIILAKDYTGLKNLYKLVSYSHL-DY 643

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR------LLTFKKLF 178
              +  RI  S L +  +EGLI+ +  S G + +A     S+   +        L  + L 
Sbjct: 644  FYKKPRILKS-LYKKYSEGLILGSACSEGELYQAILLGRSEEEIESIAEEYDYLEIQPLG 702

Query: 179  GDRLYVNLQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
             +   +  ++  G D       ++V L      P+VAT +  FL  ED     +L A   
Sbjct: 703  NNDYLIRTEQVPGKDYLMEINRKIVALGEKLNKPVVATGDVHFLDPEDEIYRRILEAGQG 762

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPR 294
                 Q       P  YLK   EM+  F+ L E  A E  V      + + +  +PI   
Sbjct: 763  FKDADQ------QPPLYLKTTEEMLEEFAYLGEDKAYEVVVTNTNLIADLCEPISPISSE 816

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                  +  ++  +     KA            +         +QRLD EL+ I +  FS
Sbjct: 817  KATPHIEGCEETIKEIAFGKAHE----------LYGNPLPDIVQQRLDRELDSIIKNGFS 866

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF-------------- 400
              ++I    +  + ++   VG  RGS   SV AY   IT+++ L                
Sbjct: 867  VMYIIAQKLVWKSNEDGYLVG-SRGSVGSSVAAYMTGITEVNALPPHYRCPSCKYSDFSD 925

Query: 401  --------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                       + FE FL  +    PD D++F  + + +  +Y 
Sbjct: 926  HGPKIGFDLPDRECPVCGTQLDKDGIDIPFETFLGFNGDKEPDIDLNFSGEYQAKAHKYT 985

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            +  +G     +  T G++  K A   V +  +      ++                    
Sbjct: 986  EVIFGKGTTFKAGTIGTIADKTAFGYVRKYFEEKNRTANK-------------------- 1025

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYR---DV 549
                            ++ IS+   G+ R +  H  GI++    R + +  P+     D 
Sbjct: 1026 --------------AEIIRISKGCTGIKRTSGQHPGGIIVVPKGREIFEFCPVQHPADDP 1071

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
             SD+  T F+   I++  L+K D LG    T+++   D        VD   IP DD +T 
Sbjct: 1072 NSDIITTHFDYHSIDQ-NLLKLDILGHDDPTVIRMLQDITG-----VDPKTIPMDDKKTM 1125

Query: 610  HLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             L ++               GT GI +  +  +R  L    P   ED+I +  L     +
Sbjct: 1126 SLFSSTEALGVTPEQINSKVGTFGIPEFGTRFVRGMLLDTLPKAFEDLICISGLSHGTDV 1185

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADV 712
                             +   LID         +  ++++M            +    ++
Sbjct: 1186 WLG--------------NAKDLIDAGTVTLSEAVCTRDEIMTYLIRKGLPPNTAFKIMEI 1231

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +R+    K  +  + +         +  I             +   Y F K+HAAAY ++
Sbjct: 1232 VRKGKALKEPKWPEYETLMREHDVPEWYID----------SCRKIKYMFPKAHAAAYVMM 1281

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIK-------------------- 803
            +++ AW K H P+ + AA  T+     +         K+K                    
Sbjct: 1282 AFRIAWFKVHIPLAYYAAYFTIRAKAFDAEFMIFGKEKVKAKMKEIEALGNQAAPKDKDM 1341

Query: 804  ----KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                +   +  +     +P  +       F+V  N +   L +I G+GT  A  +  A+ 
Sbjct: 1342 YDDLEIVLEMYERGFSFLPIDIYASHATKFQVEGNALRPPLNSISGMGTIAAEGLYNAAQ 1401

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +KPF+SLED   R         +L         DC 
Sbjct: 1402 EKPFNSLEDVKKRGKIGNSTMELLSK------FDCL 1431



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 3/102 (2%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           + Q L K+   V L +H+  S ++      +++ +       AIAITD   + S  E  +
Sbjct: 327 IRQDLAKAKR-VELHLHTQMSQMDAMSGATDLIKRAMNWGMKAIAITDHGVVQSFPEAHK 385

Query: 61  KACAA--GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
                   ++ I G +  +       +T+       T   ++
Sbjct: 386 LLGRDNPNMKVIYGVEAYLAPDKKPSVTHPKGQSIDTTYCVL 427


>gi|296451302|ref|ZP_06893042.1| DNA polymerase III PolC [Clostridium difficile NAP08]
 gi|296880346|ref|ZP_06904309.1| DNA polymerase III PolC [Clostridium difficile NAP07]
 gi|296259908|gb|EFH06763.1| DNA polymerase III PolC [Clostridium difficile NAP08]
 gi|296428587|gb|EFH14471.1| DNA polymerase III PolC [Clostridium difficile NAP07]
          Length = 1432

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 179/968 (18%), Positives = 344/968 (35%), Gaps = 189/968 (19%)

Query: 36   IAADQQPAI----AITDTNNLFSAL-EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGK 90
                  P +    A+ D         +F Q     G + +      +   D  K+     
Sbjct: 549  AKELGIPLLNHHRAVDDAEATALIFNKFLQMLTEKGAKTLSDVNNILGKIDYTKL----- 603

Query: 91   TPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGG 150
                +   I L+   + G + L +++S  ++ +   ++ RI  S L E   EGLI+ +  
Sbjct: 604  ----STNHITLIAKNSVGIKNLYKIISDAHV-NHFFRAPRILRSVLNEY-KEGLIIGSAC 657

Query: 151  SSGPIDRAFFFNSSQVAEKRLLTFKK------LFGDRLYVNLQRHRGYDRYRE--SQVVQ 202
             +G + +A   N S    K+++          +  +R  ++    +  +  RE   +++ 
Sbjct: 658  EAGVVFQAVKKNVSDEEMKKIIDLYDYIEVMPIDNNRFMIDKGEVKDEEELRELNRKLID 717

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
             A       VAT +  FL + +     VL       V  ++           +   EM+ 
Sbjct: 718  TAKKFNKIPVATGDVHFLDKHEAILRKVLKYSQGFKVDEEETYLH------FRTTDEMLE 771

Query: 263  IFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
             FS L E  A E  VE +   + +++   PI     +     I +  + ELR        
Sbjct: 772  EFSYLGEELAYEVVVENSNLIADMVEDIKPI----PDDTYPPIIEGSDVELREMCYKKA- 826

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
             R+    I      +  ++RLD ELN I    ++  ++I    +  +  +   VG  RGS
Sbjct: 827  KRIYGDPI-----PEIVQKRLDRELNSIISNGYAVMYIIAQKLVAKSLSDGYLVG-SRGS 880

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S  A    IT+++PL                                          
Sbjct: 881  VGSSFAATMSDITEVNPLPAHYICENEDCKYSFFYEIGEWGSGVDLPDKDCPKCGRKLAK 940

Query: 400  --FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
                + FE FL  +    PD D++F  + +  + +Y +  +G   V +  T G++  K A
Sbjct: 941  NGHDIPFEVFLGFEGDKEPDIDLNFSGNYQPTIHKYTEELFGEGYVYRAGTIGTVAEKTA 1000

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
                 +     Y + + +   +PN                             +L +S  
Sbjct: 1001 FGYARK-----YVEENNIS--VPN---------------------------AEVLRLSNG 1026

Query: 518  LEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFD 572
              G+ R +  H  G+++      +    P+          +  T F+   I    ++K D
Sbjct: 1027 CTGVKRTSGQHPGGVMVIPDYKDVYDFTPIQYPANDTSCGVITTHFDYHSI-SGRILKLD 1085

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
             LG    T+++   D        ++++ IP DD ET  L T+   LG+   E +      
Sbjct: 1086 ILGHDGPTIIRMLEDMTG-----INITEIPLDDKETMSLFTSTEALGVTPEEIN-CPIGC 1139

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE-KIVSIHPLIDPMLKETQGVIIY 691
              +     + +  ++   +P     +V  +   +G +  + +   L+   +   + VI  
Sbjct: 1140 LAVPEFGTKFVRQMLLDTKPTTFAELVRISGLSHGTDVWVNNAQDLVREDIVGLKDVIST 1199

Query: 692  QEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++ +M            S +  + +R+  G K            I+   KN + +    +
Sbjct: 1200 RDDIMNYLIFKGLPPKMSFTIMESVRKGKGLK---------PEHIAEMKKNNVPEWYIGS 1250

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------- 800
              ++      Y F K+HA AY + S++ A+ K HYP  F A   T ++++ +        
Sbjct: 1251 CKKI-----KYMFPKAHAVAYVMTSFRIAYCKVHYPEAFYATYFTTKVEDFDADLIVKGL 1305

Query: 801  -----KIKKF--------------------CQDARQFNIQIMPPSVNTP-CVDF-KVGDN 833
                 KI +                       +     I+++P  +      +F  VG+ 
Sbjct: 1306 DAIKSKINEIESLGNDATTKEKGMLTVLEVALEMYARGIKLLPVDIYKSDATEFIIVGEK 1365

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +   +AAI+G+G   A +I     +  F S ED   R    K+++ V+E+L   G+L+ 
Sbjct: 1366 TLLPPMAAIQGLGGNAAINIQTERKNGEFISKEDLRKRT---KISKTVIETLTNHGSLEN 1422

Query: 894  FGYSRMQL 901
                R QL
Sbjct: 1423 MSE-RNQL 1429



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 43/107 (40%), Gaps = 2/107 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   S+  ++++ A    PAIAITD   +    +      +  I+ + 
Sbjct: 333 VELHAHTQMSSMDAICSVKKLVERAAKWGHPAIAITDHGVVQGFPDAMNAGKSNNIKILY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
           G +  +  +D+L + +           +  +     G+    + ++ 
Sbjct: 393 GVEGYLVEEDSLIIEDANDKELSQTFVVFDI--ETTGFSNTNDKITE 437


>gi|309389228|gb|ADO77108.1| DNA polymerase III catalytic subunit, PolC type [Halanaerobium
            praevalens DSM 2228]
          Length = 1404

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 171/911 (18%), Positives = 327/911 (35%), Gaps = 192/911 (21%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                 V+L    +G + L +L+S  +L +   +  RI  S L +   EGLI+ +   +G 
Sbjct: 579  RPFHAVILAENKKGLKNLYQLISISHL-NNFYKKPRILKSVLLQ-HREGLIIGSACEAGQ 636

Query: 155  IDRAFFFNSSQVAEKRL------LTFKKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTH 207
            I +AF  N  +   K++      L  + L  ++  +  + +   D +    ++ +L    
Sbjct: 637  IYKAFVNNKPRSEIKKIAKLYDYLELQPLGNNQFLIPAKVNSKDDLKEINKKIYKLGQEL 696

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
            + P+VAT ++ FL  +D    ++L         +  D+    P  Y +  +EM+S F+  
Sbjct: 697  DKPVVATTDAHFLDPKDSIFREIL---QTGQGFNDADQ---QPPIYYRTTNEMLSEFAYF 750

Query: 268  PE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
             +  A E  ++   + +  ++   PI       E +  + E      N+A      +L  
Sbjct: 751  GKKIAKEIVIDNPNQIADRIEKIKPIPDGLFTPEIEGAEAEIREMSYNRAHKFYGEKL-- 808

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                     Q    RL+ EL+ I    F+  +LI    ++ + ++   VG  RGS   S 
Sbjct: 809  --------PQLVIDRLEKELSSIIENGFAVIYLIAHKLVKKSLEDGYLVG-SRGSVGSSF 859

Query: 386  TAYALTITDIDPLR-----------------------------------------FSLLF 404
             A    IT+++PL                                          F + F
Sbjct: 860  VATMTEITEVNPLPPHYRCPKCSKHEFITDGSIGTGVDLPDKKCPDCGTEYIKDGFDIPF 919

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E F+      +PD D++F  + + ++ +Y +  +G + V +  T  ++  + A   V   
Sbjct: 920  EVFMGFKGDKVPDIDLNFSGEYQGKIHKYTEEFFGRDYVYKAGTISTIADRTAFGFVKNY 979

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L      V R                                 +DRL+       G+ R 
Sbjct: 980  LDEKGMDVKR-------------------------------AEIDRLVA---GCTGVRRT 1005

Query: 525  ASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  G++I  +   +    P+         D+  T F+   I    ++K D LG    
Sbjct: 1006 TGQHPGGLMIVPKSNSIFDFSPIQHPANDQDTDIRTTHFDYHSI-SGRILKLDLLGHDDP 1064

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLES 625
            T L+   D        ++   IP DD +T  + ++                TLGI +  +
Sbjct: 1065 TSLRLLQDMTG-----IEPKDIPLDDPDTMSIFSSTDILEVEADLLGTDIGTLGIPEFGT 1119

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
            S ++Q L   +P    +++ +  L     +      +  +NGK ++  +  + D ++   
Sbjct: 1120 SFVQQMLRDTRPTTFAELVRISGLSHGTDVWINNAQSLIRNGKAELAEVISVRDDIMNYL 1179

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
                +   Q   I            + +R+  G   +EE                + +  
Sbjct: 1180 LQKGVEPSQAFWI-----------MEHVRKGKGLTAEEEEA--------------MRENQ 1214

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV------ 799
              N +    K   Y F K+HAAAY  ++Y+ A+ K HYP  F  A  +++  +       
Sbjct: 1215 VPNWYIDSCKKIKYMFPKAHAAAYVTMAYRIAYFKVHYPAAFYTAYFSIKAGDFDAQLAC 1274

Query: 800  -------EKIKKF--------------------CQDARQFNIQIMPPSVNTPCVDFKV-- 830
                   +KI++                       +A    I+ MP  +     +  +  
Sbjct: 1275 NGRQVVIDKIEELEALGNDMTAKESGTLTVLRIVLEAMMRGIEFMPVDIYESAANHFIKK 1334

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             +N++   L +++G+G + A  ++       F S+E+  +R         V+E L   G+
Sbjct: 1335 EENKLLAPLISLQGLGGSAAESVVVERQKSDFTSIEELSNRTSLTST---VIEILREHGS 1391

Query: 891  LDCFGYSRMQL 901
            L      R QL
Sbjct: 1392 LAGM-PERNQL 1401



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++  L++ +++ +       A+AITD   + +  +        G++ I 
Sbjct: 306 VELHLHTQMSAMDSVLNVKDVVKRAGDWGHKALAITDHGVVQAFPDAYAAGEKHGVKIIY 365

Query: 72  GC 73
           G 
Sbjct: 366 GV 367


>gi|110799061|ref|YP_696378.1| DNA polymerase III PolC [Clostridium perfringens ATCC 13124]
 gi|168211421|ref|ZP_02637046.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens B str. ATCC 3626]
 gi|110673708|gb|ABG82695.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens ATCC 13124]
 gi|170710571|gb|EDT22753.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens B str. ATCC 3626]
          Length = 1449

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 171/897 (19%), Positives = 320/897 (35%), Gaps = 179/897 (19%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            +  I++L     G + L +LVS  +L D   +  R+  S + E   EGLI+ +   +G +
Sbjct: 624  LHHIIILAKNQTGIKNLYKLVSMAHL-DYFARRPRLPKSIITEY-REGLIIGSACEAGQL 681

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTH 207
             +A     +    K + +F      + +  +   +     +  +  RE   ++  L    
Sbjct: 682  YKAVLEGKTDGELKEIASFYDYLEIQPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEM 741

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
            + P+VAT +  FL   D     ++MA                P  Y +  +EM+  F  L
Sbjct: 742  DKPVVATCDCHFLDPNDEVFRRIIMAGQGYGDADN------QPPLYFRTTNEMMKEFEYL 795

Query: 268  PE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
             E       +ENT +IA     +  +     P  IE          E E+RN  +  +  
Sbjct: 796  GEEACREVVIENTQKIADMVEAVKPIPDETFPPKIEG--------AEEEIRNMTMNKVHS 847

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
               +         +  ++RLD ELN I    ++  +LI    +  + ++   VG  RGS 
Sbjct: 848  IYGENL------PEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSLEDGYLVG-SRGSV 900

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++ L                                           
Sbjct: 901  GSSFVATMSDITEVNGLPPHYVCPNCKKSEFFLDGSISSGADLPDKNCPDCGAKYIKDGH 960

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A   
Sbjct: 961  DIPFETFLGFEGDKEPDIDLNFSGEYQAVVHKYTEVLFGKGYVFKAGTIGTVAEKTAYGF 1020

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V + LQ                                R   ++   ++RL   +    G
Sbjct: 1021 VKKYLQE-------------------------------RGLVVSQAEIERL---TIGCTG 1046

Query: 521  LYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + R +  H  GI++   D  +    P+     DV +D+  T F+   I    L+K D LG
Sbjct: 1047 IKRTSGQHPGGIMVVPNDNEIYNFCPIQHPADDVNTDIITTHFDYHSI-SGRLLKLDILG 1105

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
                T+L+   D        +D   IP +D +   L T+   LG+ + E  G      G+
Sbjct: 1106 HDDPTVLRMLQDLTG-----LDPKTIPLNDPKVISLFTSPDALGVTKEEL-GCEVGSYGL 1159

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQ 694
                 + +  ++   +P    ++V  +   +G +  + +    I       +  I  ++ 
Sbjct: 1160 PEFGTKFVRQMLVDTQPKSFADLVRISGLSHGTDVWLNNAQYFIKEGYTTLKDCIATRDD 1219

Query: 695  VM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            +M       L    + +  + +R+   K + E+ +              + +    + + 
Sbjct: 1220 IMVYLMYKDLPPKTAFTIMEKVRKG--KGLSEDDEAL------------MREKNVPDWYI 1265

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK---------- 801
               K   Y F K HA AY +++ + A+ K +YP  +     T+  D+ +           
Sbjct: 1266 ESCKRIKYMFPKGHAVAYVMMAVRIAYYKVYYPEAYYTTYFTVRADDFDADLICKGEEAI 1325

Query: 802  -----------------------IKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYY 837
                                   I +   +  +  +  +      +    FK+ ++ I  
Sbjct: 1326 KAKMEELNSLGNNISVKEKGLLTILEISYEMYKRGLNFLKVDLYKSEATKFKIEEDGIRP 1385

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             L A++GVG   A+ I+E   +  F S ED   R    K+++ V+E+L   G L+  
Sbjct: 1386 PLNALQGVGDNAAKSIVECRVNGEFISKEDLRLR---SKVSKTVIETLDNHGCLEGM 1439



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 36/86 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   + + I+++ A     A+AITD   + +  +    A    I+ I 
Sbjct: 350 VELHMHTTMSSMDAVTAASKIVERAAKFGHKAVAITDHGVVQAFPDAQIAAKKNNIKVIY 409

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + N  +  F    
Sbjct: 410 GVEGYLADNGTPIVINGHEESFDDEY 435


>gi|168216978|ref|ZP_02642603.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens NCTC 8239]
 gi|182380934|gb|EDT78413.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens NCTC 8239]
          Length = 1449

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 173/897 (19%), Positives = 321/897 (35%), Gaps = 179/897 (19%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            +  I++L     G + L +LVS  +L D   +  R+  S + E   EGLI+ +   +G +
Sbjct: 624  LHHIIILAKNQTGIKNLYKLVSMAHL-DYFARRPRLPKSIITEY-REGLIIGSACEAGQL 681

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTH 207
             +A     +    K + +F      + +  +   +     +  D  RE   ++  L    
Sbjct: 682  YKAVLEGKTDGELKEIASFYDYLEIQPIQNNEFLIRKGNVKDEDELRELNRKIYDLGKEM 741

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
            + P+VAT +  FL   D     ++MA          D     P  Y +  +EM+  F  L
Sbjct: 742  DKPVVATCDCHFLDPNDEVFRRIIMA---GQGYGDADN---QPPLYFRTTNEMMKEFEYL 795

Query: 268  PE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
             E       +ENT +IA     +  +     P  IE          E E+RN  +  +  
Sbjct: 796  GEEACREVVIENTQKIADMVEAVKPIPDETFPPKIEG--------AEEEIRNMTMNKVHS 847

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
               +         +  ++RLD ELN I    ++  +LI    +  + ++   VG  RGS 
Sbjct: 848  IYGENL------PEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSLEDGYLVG-SRGSV 900

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++ L                                           
Sbjct: 901  GSSFVATMSDITEVNGLPPHYVCPNCKKSEFFLDGSISSGADLPDKNCPDCGAKYIKDGH 960

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A   
Sbjct: 961  DIPFETFLGFEGDKEPDIDLNFSGEYQAVVHKYTEVLFGKGYVFKAGTIGTVAEKTAYGF 1020

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V + LQ                                R   ++   ++RL   +    G
Sbjct: 1021 VKKYLQE-------------------------------RGLVVSQAEIERL---TIGCTG 1046

Query: 521  LYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + R +  H  GI++   D  +    P+     DV +D+  T F+   I    L+K D LG
Sbjct: 1047 IKRTSGQHPGGIMVVPNDNEIYNFCPIQHPADDVNTDIITTHFDYHSI-SGRLLKLDILG 1105

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
                T+L+   D        +D   IP +D +   L T+   LG+ + E  G      G+
Sbjct: 1106 HDDPTVLRMLQDLTG-----LDPKTIPLNDPKVISLFTSPDALGVTKEEL-GCEVGSYGL 1159

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQ 694
                 + +  ++   +P    ++V  +   +G +  + +    I       +  I  ++ 
Sbjct: 1160 PEFGTKFVRQMLVDTQPKSFADLVRISGLSHGTDVWLNNAQYFIKEGYTTLKDCIATRDD 1219

Query: 695  VM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            +M       L    + +  + +R+   K + E+ +              + +    + + 
Sbjct: 1220 IMVYLMYKDLPPKTAFTIMEKVRKG--KGLSEDDEAL------------MREKNVPDWYI 1265

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK---------- 801
               K   Y F K HA AY +++ + A+ K +YP  +     T+  D+ +           
Sbjct: 1266 ESCKRIKYMFPKGHAVAYVMMAVRIAYYKVYYPEAYYTTYFTVRADDFDADLICKGEEAI 1325

Query: 802  -----------------------IKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYY 837
                                   I +   +  +  +  +      +    FK+ ++ I  
Sbjct: 1326 KAKMEELNSLGNNISVKEKGLLTILEISYEMYKRGLNFLKVDLYKSEATKFKIEEDGIRP 1385

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             L A++GVG   A+ I+E   +  F S ED   R    K+++ V+E+L   G L+  
Sbjct: 1386 PLNALQGVGDNAAKTIVECRVNGEFISKEDLRLR---SKVSKTVIETLDNHGCLEGM 1439



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 36/86 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   + + I+++ A     A+AITD   + +  +    A    I+ I 
Sbjct: 350 VELHMHTTMSSMDAVTAASKIVERAAKFGHKAVAITDHGVVQAFPDAQIAAKKNNIKVIY 409

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + +  +  F    
Sbjct: 410 GVEGYLADNGTPIVISGHEESFDDEY 435


>gi|187778984|ref|ZP_02995457.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC 15579]
 gi|187772609|gb|EDU36411.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC 15579]
          Length = 1442

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 172/903 (19%), Positives = 318/903 (35%), Gaps = 169/903 (18%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
               +++L   A G + L +LVS+  L +   +  R+  S + E   EGLI+ +   +G I
Sbjct: 616  TYHLIILAKNAVGLKNLYKLVSKSNL-EYFFKRPRMAKSLINEY-KEGLIIGSACEAGQI 673

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTH 207
             +      ++   K ++ F      + L  +   V     +  +  +E   ++ +L   +
Sbjct: 674  YKEILKGKTKEELKNMIDFYDYLEIQPLGNNEFLVKNGSVKDEEELKEINKKICELGEFY 733

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
              P+VAT +  FL EE      +LM+    +           P  Y +   EM+  F  L
Sbjct: 734  NKPVVATCDVHFLDEEHEVFRRILMSGQGFSDADN------QPPLYFRTTEEMLKEFEYL 787

Query: 268  PE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
             E  A E  +    + + ++    PI       + +  +++  N    KA          
Sbjct: 788  GEEKAKEVVIYNTNKIADMIDEIKPIPEETFPPKIEGAEEDIRNMTIKKAHD-------- 839

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
              I      +   +RL  ELN I    ++  +LI    +  + ++   VG  RGS   S 
Sbjct: 840  --IYGDPLPEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SRGSVGSSF 896

Query: 386  TAYALTITDIDPLR-----------------------------------------FSLLF 404
             A    IT+++ L                                            + F
Sbjct: 897  AATMSDITEVNGLPPHYICPKCKYSEFFTDGSVGSGADLEDKDCPKCGTKLIKDGHDIPF 956

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A   V + 
Sbjct: 957  ETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTAYGFVKKY 1016

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L                                 +  +  +  ++RL   S+   G+ R 
Sbjct: 1017 LDE-------------------------------KNIKANNAEIERL---SKGCTGVKRT 1042

Query: 525  ASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D LG    
Sbjct: 1043 SGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSI-SGRLLKLDILGHDDP 1101

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            T+L+   D       +VD   +P  D +   L T+   LG+ + +         G+    
Sbjct: 1102 TVLRMLQDL-----TQVDPKAVPLGDPKVISLFTSTKALGVTEEDID-CPVGTYGLPEFG 1155

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQI 698
             + +  ++   +P     +V  +   +G +  ++     I       +  I  ++ +M +
Sbjct: 1156 TKFVRQMLLDTKPKSFAELVRISGLSHGTDVWLNNAQYFIKEGYTTIKDCISTRDDIM-V 1214

Query: 699  AQLLSGYSLSEADVLRRAMGKKI--KEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
              L  G     A  +   + K     EE +              + +    + +    K 
Sbjct: 1215 YLLQKGLPPKSAFTIMEKVRKGKGLTEEQEAL------------MKEHDVPDWYIESCKK 1262

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIK---- 803
              Y F K HA AY +++ + A+ K +YP  +     ++  D+ +         KIK    
Sbjct: 1263 IKYMFPKGHAVAYVMMAMRIAYFKVYYPKAYYTTYFSVRADDFDADLIVKGEEKIKEKMN 1322

Query: 804  --------------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAI 842
                                + C +  +  I+ +   +       F +  + I   L+A+
Sbjct: 1323 ELYAMGNNITQKDKGLLTILEICYEMYKRGIKFLKVDLYKSNATKFLIEGDSIRPPLSAL 1382

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            +GVG   A+ I EA  +  F S ED   R    K+ + V+E+L   G L     +    L
Sbjct: 1383 QGVGKNAAKSIEEARLEGEFISKEDLRLRT---KVTKTVIETLANHGCLRGMQETNQISL 1439

Query: 903  QSL 905
             SL
Sbjct: 1440 FSL 1442



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++G   ++ ++ + A     A+AITD   + +  +    A    I+ I 
Sbjct: 343 VELHMHSQMSAMDGMTPVSELVKRAAKWGHKAVAITDHGVVQAYPDAMSAAKKGNIKVIY 402


>gi|257869605|ref|ZP_05649258.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
 gi|257803769|gb|EEV32591.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
          Length = 1449

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 165/950 (17%), Positives = 327/950 (34%), Gaps = 189/950 (19%)

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            +     G+         +  +++ K                +L  T  G + L +L+S  
Sbjct: 585  EAMEKHGMLLHEDLNRHVGGENSFKAARP--------FHATILAKTQAGLKNLFKLISMS 636

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KL 177
             +     +  RI  S L ++  EGL++ T    G +  A        A K    +   ++
Sbjct: 637  NVKYFHDKVPRIPRSELVKL-REGLLVGTACDKGEVFVAMMQKGVDAARKLAEFYDYIEV 695

Query: 178  FGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
                +Y       L ++          ++++       +VAT N  +L+EED     +L+
Sbjct: 696  MPKEVYAHLIETELVKNESDLEDIIRNLIEIGNELGKVVVATGNVHYLNEEDAIYRKILI 755

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAP 290
                    +        P  + +   EM++ F  L    A E  V    + + + +   P
Sbjct: 756  NSMGG---ANPLNRHSLPAVHFRTTDEMLTAFQFLGPDTAKEIVVTNPNKIADMCEKVIP 812

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +    ++E  +   N+A            +      +   +RL  EL+ I  
Sbjct: 813  VKDDLYTPKIPGSEQEITDLSYNRAKE----------LYGDPLPEIVEKRLKKELDSIIG 862

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------ 398
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 863  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPDCQYS 921

Query: 399  -----------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  + + E
Sbjct: 922  EFYEDGSYGSGYDMPEKKCPKCGTRLNKDGHDIPFETFLGFHGDKVPDIDLNFSGEYQPE 981

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G + V +  T G++  K A   V +  +  ++   R               
Sbjct: 982  AHNYTKVLFGEDYVYRAGTIGTVADKTAFGFV-KGFERDHNLHYRAA------------- 1027

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY- 546
                              VDRL   ++   G+ R    H  GI++      +    P+  
Sbjct: 1028 -----------------EVDRL---AKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1067

Query: 547  --RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
               D+ S+   T F+   I    ++K D LG    T+++   D        +D   IP D
Sbjct: 1068 PADDMNSEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTD 1121

Query: 605  DHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            D E   +               +  GTLGI +  +  +R  LE   P    +++ +  L 
Sbjct: 1122 DPEVMRIFGGTDVLGVTEEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLS 1181

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
                +          N +E I      +  ++     +++Y    +  A L  G +    
Sbjct: 1182 HGTDVWLG-------NAEELIRRGDANLAEVIGCRDDIMVY----LIHAGLDDGMAFKIM 1230

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + +R+    KI +++   ++ ++    +N + +    +  ++      Y F K+HAAAY 
Sbjct: 1231 ETVRKGQWNKIPDDL---RDTYLQAMRENNVPEWYIDSCSKI-----KYMFPKAHAAAYV 1282

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK--------------------------- 803
            +++ + A+ K ++P+ +  A  ++  D+ + I                            
Sbjct: 1283 LMALRVAYFKVYFPILYYCAYFSVRADDFDLIAMSKGKEAVKERMQEINDKGMDASTKEK 1342

Query: 804  ------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                  +   +  +   +     +     + F +  N++     A+  +G   A+ I EA
Sbjct: 1343 NLLTVLELANEMLERGYEFGMIDLYKSDAENFVIDGNKLIAPFRAVPSLGLNVAKQICEA 1402

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              D PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1403 RKDGPFLSKEDLANR---GKVSKTLIEYMTDNGVLKDLPDENQLSLFDML 1449



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++   ++++++ +       AIAITD     +  +       AG++ + 
Sbjct: 337 VELHLHSNMSTMDATNNISDLVAQAGKWGHKAIAITDHGGAQAFPDAHHAGEKAGVKILY 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N    P      IV  V T
Sbjct: 397 GVEANIVDDGVAVAYNPKPVPLTDATYIVFDVET 430


>gi|168180697|ref|ZP_02615361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum NCTC 2916]
 gi|182668382|gb|EDT80361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum NCTC 2916]
          Length = 1432

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 169/910 (18%), Positives = 315/910 (34%), Gaps = 183/910 (20%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
               +++L   A G + L +LVS+  L +   +  R+  S + E   EGLI+ +   +G I
Sbjct: 606  THHLIILAKNAVGLKNLYKLVSKSNL-EYFFKRPRMAKSLINEY-KEGLIIGSACEAGQI 663

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVV 201
             +      ++   K ++ F        Y+ +Q     +                   ++ 
Sbjct: 664  YKEILKGKTKEELKNMIDFYD------YLEIQPLGNNEFLVKNGSVKDEKELEEINKKIC 717

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +L   +  P+VAT +  FL EE      +LM+    +           P  Y +   EM+
Sbjct: 718  ELGEFYNKPVVATCDVHFLDEEHEVFRRILMSGQGFSDADN------QPPLYFRTTEEML 771

Query: 262  SIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
              F  L E  A E  +    + + ++    PI       + +      E ++R   +   
Sbjct: 772  KEFEYLGEEKAKEVVIYNTNKIADMIDEIKPIPEETFPPKIEGA----EEDIRRMTIEKA 827

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                   +I      +   +RL  ELN I    ++  +LI    +  + ++   VG  RG
Sbjct: 828  H------SIYGDPLPEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SRG 880

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S  A    IT+++ L                                         
Sbjct: 881  SVGSSFAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIKD 940

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A 
Sbjct: 941  GHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTAY 1000

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V + L                                 +  +  +  ++RL   S+  
Sbjct: 1001 GFVKKYLDE-------------------------------KNIKANNAEIERL---SKGC 1026

Query: 519  EGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDF 573
             G+ R +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D 
Sbjct: 1027 TGVKRTSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSI-SGRLLKLDI 1085

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            LG    T+L+   D       +VD   +P  D +   L T+   LG+ + +         
Sbjct: 1086 LGHDDPTVLRMLQDL-----TQVDPKSVPLGDPKVISLFTSPEALGVTEEDID-CPVGTY 1139

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQ 692
            G+     + +  ++   +P     +V  +   +G +  ++     I       +  I  +
Sbjct: 1140 GLPEFGTKFVRQMLLDTKPKSFAELVRISGLSHGTDVWLNNAQYFIKEGYTTIKDCISTR 1199

Query: 693  EQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            + +M      +L    + +  + +R+   K + EE +              + +    + 
Sbjct: 1200 DDIMVYLLQKELPPKSAFTIMEKVRKG--KGLTEEQEAL------------MKEHDVPDW 1245

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------- 800
            +    K   Y F K HA AY +++ + A+ K +YP  + A   ++  D+ +         
Sbjct: 1246 YIESCKKIKYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADLIVKGEE 1305

Query: 801  KIK------------------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRI 835
            KIK                        + C +  +  I+ +   +       F +  + I
Sbjct: 1306 KIKEKMNELYAMGNNITQKDKGLLTILEICYEMYKRGIKFLKVDLYKSNATKFLIEGDSI 1365

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L+A++GVG   A+ I EA  +  F S ED   R    K     LE+    G L    
Sbjct: 1366 RPPLSALQGVGKNAAKSIEEARLEGEFISKEDLRLRTKVTKTVIETLEN---HGCLRGMQ 1422

Query: 896  YSRMQLLQSL 905
             +    L SL
Sbjct: 1423 ETNQISLFSL 1432



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++G   ++ ++ + A     A+AITD   + +  +    A    I+ I 
Sbjct: 333 VELHMHSQMSAMDGMTPVSELVKRAAKWGHKAVAITDHGVVQAYPDAMSAAKKGNIKVIY 392


>gi|257867714|ref|ZP_05647367.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
 gi|257874041|ref|ZP_05653694.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
 gi|257801797|gb|EEV30700.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
 gi|257808205|gb|EEV37027.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
          Length = 1449

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 171/935 (18%), Positives = 324/935 (34%), Gaps = 195/935 (20%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  +  +            +L  T  G + L +L+S   +     +  RI  S L ++  
Sbjct: 599  NRHVGGENSYKAARPFHATILARTQAGLKNLFKLISMSNVKYFHDKVPRIPRSELVKL-R 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDR 194
            EGL++ T    G +  A        A +    +       K ++   L + L +      
Sbjct: 658  EGLLVGTACDKGEVFVAMMQKGVDAARELAKFYDYIEVMPKAVYAHLLEMELVKSEKDLE 717

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                 +V++       +VAT N+ +L+EED     VL+        +        PD + 
Sbjct: 718  DIIRNLVKMGEELGKIVVATGNAHYLNEEDAIYRKVLINSMGG---ANPLNRHSLPDVHF 774

Query: 255  KNRSEMVSIFSDL-PEA-----LENTVEIARRCSFILQVHAPILPRFI---EKECDDIQK 305
            +   EM++ F  L PEA     + N  +IA  C  ++ V   +    I   E+E  D+  
Sbjct: 775  RTTDEMLTAFQFLGPEAAKEIVVTNPNKIADLCEKVIPVKDDLYTPKIPGSEQEITDLSY 834

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                EL                       +   +RL  EL+ I    FS  +LI    + 
Sbjct: 835  NRAKELYG-----------------DPLPEIVEKRLKKELDSIIGNGFSVIYLISQKLVH 877

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--------------------------- 398
             + ++   VG  RGS   S  A    IT+++PL                           
Sbjct: 878  KSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPDCQYSEFYEDGSYGSGYDMP 936

Query: 399  --------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL      +PD D++F  + + E   Y +  +G E V 
Sbjct: 937  EKKCPKCGTRLNKDGHDIPFETFLGFHGDKVPDIDLNFSGEYQPEAHNYTKVLFGEEYVY 996

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++  K A   V +  +  ++   R                              
Sbjct: 997  RAGTIGTVADKTAFGFV-KGFERDHNLHYRAA---------------------------- 1027

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
               VDRL   ++   G+ R    H  GI++      +    P+         +   T F+
Sbjct: 1028 --EVDRL---AKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNAEWKTTHFD 1082

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL------- 612
               I    ++K D LG    T+++   D        +D   IP DD E   +        
Sbjct: 1083 FHSIHD-NILKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMRIFGGTDVLG 1136

Query: 613  -------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                   +  GTLGI +  +  +R  L+   P    +++ +  L     +          
Sbjct: 1137 VTEEQIYSKTGTLGIPEFGTRFVRGMLDQTHPSTFAELLQISGLSHGTDVWLG------- 1189

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N +E I      +  ++     +++Y    +  A L  G +    + +R+    KI +++
Sbjct: 1190 NAEELIRRGDASLAEVIGCRDDIMVY----LIHAGLDDGMAFKIMETVRKGQWNKIPDDL 1245

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
               ++ ++    +N + +    +  ++      Y F K+HAAAY +++ + A+ K ++P+
Sbjct: 1246 ---RDTYLQAMRENNVPEWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPI 1297

Query: 786  EFLAASMTLEMDNVEKIK---------------------------------KFCQDARQF 812
             +  A  ++  D+ + I                                  +   +  + 
Sbjct: 1298 LYYCAYFSVRADDFDLIAMSKGKDAVKERMQEITDKGLDASTKEKNLLTVLELANEMLER 1357

Query: 813  NIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              +     +     + F +   ++     A+  +G   A+ I+EA  D PF S ED  +R
Sbjct: 1358 GYEFGMIDLYKSDAENFVIDGKKLIAPFRAVPSLGLNVAKQIVEARKDGPFLSKEDLANR 1417

Query: 872  VDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
                K+++ ++E +   G L D    +++ L   L
Sbjct: 1418 ---GKVSKTLIEYMTDNGVLKDLPDENQLSLFDML 1449



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++   ++ + + +       AIAITD +      +       AG++ + 
Sbjct: 337 VELHLHSNMSTMDATNNVADFVAQAGKWGHKAIAITDHSGAQGFPDAHHAGEKAGVKILY 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N    P      IV  V T
Sbjct: 397 GVEANIVDDGVAVAYNPQPVPLTDATYIVFDVET 430


>gi|315302974|ref|ZP_07873694.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            ivanovii FSL F6-596]
 gi|313628654|gb|EFR97067.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            ivanovii FSL F6-596]
          Length = 1452

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 173/935 (18%), Positives = 304/935 (32%), Gaps = 194/935 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            I+                   +G       P    +   TA G + L +L++   + +  
Sbjct: 596  IKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYF 654

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLF 178
             +  RI  S L+++  EGLI+ T  S G +  A        AEK    +       K ++
Sbjct: 655  YRVPRIPRSQLKKL-REGLIIGTACSQGELFEAMMQKGMLAAEKVAEFYDFIEIQPKPVY 713

Query: 179  GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               +   L R           +V++      P+VAT N  +    D     +L+      
Sbjct: 714  APLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILIHSQGG- 772

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFI 296
              +        PD + ++  EM+  F+ L E  A E  V  +      ++   PI     
Sbjct: 773  --ANPLNRAELPDVHFRSTDEMLKEFAFLGEEKAKEVVVTNSNLVVDWMEELKPIKDELY 830

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              + D      E+E+RN +         +         +    RL+ EL  I    F+  
Sbjct: 831  TPKIDGA----EDEVRNMSYNMAHQLYGEKL------PEIVEARLEKELKSIIGHGFAVI 880

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------- 403
            +LI    ++ +  +   VG  RGS   S  A    IT+++PL    L             
Sbjct: 881  YLISHKLVKKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCQDSEFFDDG 939

Query: 404  ----------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                        FE FL      +PD D++F  D +     Y +
Sbjct: 940  SIGSGFDLPDKDCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTK 999

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G + V +  T G++  K A   V R  +   +   R                     
Sbjct: 1000 EIFGEDYVFRAGTIGTVAEKTAFGYV-RNYERDMNMTIRGA------------------- 1039

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVR 550
                        +DRL+       G+ R    H  GI++      +    P+        
Sbjct: 1040 -----------EIDRLVA---GCTGVKRTTGQHPGGIIVIPNYMDVYDFTPVQFPADATD 1085

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
            S+   T F+   I    ++K D LG    T ++   D        +D   IP DD +   
Sbjct: 1086 SEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDL-----SGIDPKTIPTDDPDVMK 1139

Query: 611  LL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            L               +  GTLGI +  +  +RQ LE  +P    +++ +  L     + 
Sbjct: 1140 LFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHGTDVW 1199

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVL 713
                            +   LI     E   VI  ++ +M       L S  +    + +
Sbjct: 1200 LG--------------NAEELIKNKTCELPDVIGCRDDIMVFLIYQGLESSLAFKIMESV 1245

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+   K + EEM++             +        +    K   Y F K+HAAAY +++
Sbjct: 1246 RKG--KGLTEEMEEA------------MMANNVPLWYIESCKKIKYMFPKAHAAAYVLMA 1291

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVE--------------------------------- 800
             + A+ K HYP+ F A   T+  D+ +                                 
Sbjct: 1292 VRIAYFKVHYPLYFYATYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLL 1351

Query: 801  KIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
             + +   +               +   +F +  + +     AI  +GT  A+ I+ A  +
Sbjct: 1352 TVLEIANEMLARGFHFQKVDLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAAREN 1411

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              F S ED   R    K+++ +++ +   G L+  
Sbjct: 1412 GEFLSKEDLQQR---GKVSKTIIQYMDDQGCLEGL 1443



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 350 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 409


>gi|262037779|ref|ZP_06011221.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
            goodfellowii F0264]
 gi|261748251|gb|EEY35648.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
            goodfellowii F0264]
          Length = 1438

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 158/907 (17%), Positives = 316/907 (34%), Gaps = 174/907 (19%)

Query: 81   DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG 140
              +    Q         + ++LV   +G + L EL+SR ++   G +  RI  + L  + 
Sbjct: 583  SEINQELQTNIQNADTLNTMILVKNQDGLRDLYELISRSHIEFFGNKKPRIPKTLLNSMR 642

Query: 141  TEGLIMLTG----GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR 196
               L+  +     G+SG +   +   + +   +    F        Y+ +Q    Y    
Sbjct: 643  KNLLLASSASAVFGNSGELVNLYLRGTEREEIEEKAKFYD------YIEIQPLSNYADLE 696

Query: 197  ESQVVQ----------------LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
               +++                L    +  +VAT +  +L E +     VL+      + 
Sbjct: 697  RDSLIESENAKIVLEMNRYFYDLGKKLDKIVVATGDVHYLEEREAINRSVLV------LG 750

Query: 241  SQKDRPRVTPDH--YLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFI 296
            S   R   + D   + K   EM+  FS L   EA E  VE   + + +++   PI   F 
Sbjct: 751  SGMGRRVFSYDKKLFFKTTEEMLEEFSYLGNDEAYEVVVENTNKINDMIESVRPIPKGFY 810

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              + +      E+E+R      L     +         +   +R++ ELN I    F+  
Sbjct: 811  PPKIEGA----EDEVRKMTYEKLHELYGENV------PEHLNERIEKELNSIIGNGFAVL 860

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------------ 398
            +LI    ++ +  N   VG  RGS   S+ AY + IT+++ L                  
Sbjct: 861  YLIAQKLVKKSLDNGYLVG-SRGSVGSSIVAYMMGITEVNGLYPHYRCPNCKHSEFTELE 919

Query: 399  ---------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                   ++ FE F+  +   +PD D++F  + + E+ +Y +  
Sbjct: 920  GSGVDLEDKICPNCGTKYIKDGHAIPFEVFMGFNGDKVPDIDLNFSGEYQGEIHKYTEEL 979

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G + V +  T  +L  K A   V +  +      + + K                    
Sbjct: 980  FGSDNVFRAGTISTLAEKNAFGYVKKYFEEVEGTTE-ISK-------------------- 1018

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYR---DVRSD 552
                         ++ I++  EG  +    H  G+++  +   +    P+ R   DV +D
Sbjct: 1019 ---------RKSEIMRIAKGCEGARKTTGQHPGGMIVVPKDKSIYDFCPIQRPANDVNAD 1069

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T F+   +++  L+K D LG    T L+   D        +D+  IP DD +   L 
Sbjct: 1070 SKTTHFDYHVMDEQ-LVKLDLLGHDDPTTLRILQDLTG-----IDIYTIPLDDKKVMSLF 1123

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +    LG    E  G      G+       +  ++   +P     +V  +   +G +  +
Sbjct: 1124 SGTEALGATP-EQIGSPVGSSGIPEFGTSFVKQMLVDTKPTTFAELVRISGLSHGTDVWL 1182

Query: 673  S-IHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            +     +         +I  ++ +M       L    + +  + +R+    K  E+  + 
Sbjct: 1183 NNAQEYVRNGTATLSEIITVRDDIMNYLIDNGLDKSVAFTIMEFVRKGQPTKNPEKWKEY 1242

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
             +          + +      +    +   Y F K HA AY +++ + A+ K HYP+EF 
Sbjct: 1243 SKI---------MKEHKVKQWYIDSCEKIKYMFPKGHAVAYVMMAVRIAYFKVHYPLEFY 1293

Query: 789  AASMTLEMDNVEKIK--------------------------------KFCQDARQFNIQI 816
             A +  ++++ +                                   +   +     I++
Sbjct: 1294 TAFLNRKVEDFKMTAMFKPIDELKKSRTELDRKGNLNAKEKQELFLYEILIEMHYRGIEL 1353

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            M   +       F++ + +I   L A+ G+G   A +++    +  F S+ED   R    
Sbjct: 1354 MQIDIYKSDARQFRIENGKIRMPLIAMDGLGEAVAINVINERKNGEFLSIEDLVKRTKLN 1413

Query: 876  KLNRRVL 882
            K    +L
Sbjct: 1414 KTVVDLL 1420



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S + G +S  ++  +       A+A+TD   + S   F+ K      + I 
Sbjct: 327 VELHAHTNMSEMSGVVSAKDLAKRAKEFGHSAVAVTDFGVVHS-FPFAYKESDENFKIIF 385

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G +  +   +   +T            +V  + T
Sbjct: 386 GVEAYVVDDEQEMITKPADRLIEDEIYVVFDIET 419


>gi|313608987|gb|EFR84729.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            monocytogenes FSL F2-208]
          Length = 1447

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 171/937 (18%), Positives = 307/937 (32%), Gaps = 197/937 (21%)

Query: 68   QPIIGCQLDIDMQDNLKMTN----QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            + I   +   D+  +  + +                 +   TA G + L +L++   + +
Sbjct: 589  KLIKDAKEMHDIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-N 647

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KK 176
               +  RI  S L+++  EGLI+ T  S G +  A      Q AEK    +       K 
Sbjct: 648  YFYRVPRIPRSQLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKP 706

Query: 177  LFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            ++   +   L R           +V++      P+VAT N  +    D     +L+    
Sbjct: 707  VYAPLIERELVRDETALEEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILIHSQG 766

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPR 294
                +        PD + +   EM+  F+ L E  A E  V  +      ++   PI   
Sbjct: 767  G---ANPLNRAELPDVHFRTTDEMLKEFAFLGEEKAKEIVVTNSNLVVDWMEDLKPIKDE 823

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                + D      E+E+RN +         +         +    RL+ EL  I    F+
Sbjct: 824  LYTPKIDGA----EDEVRNMSYEMAHQLYGENL------PEIVEARLEKELKSIIGHGFA 873

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL----------- 403
              +LI    ++ +  +   VG  RGS   S  A    IT+++PL    L           
Sbjct: 874  VIYLISHKLVKKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFD 932

Query: 404  ------------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
                                          FE FL      +PD D++F  D +     Y
Sbjct: 933  DGSVGSGFDLPDKDCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAY 992

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
             +  +G + V +  T G++  K A   V R  +   +   R                   
Sbjct: 993  TKEIFGEDYVFRAGTIGTVAEKTAFGYV-RNYERDMNMTIRGA----------------- 1034

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RD 548
                          +DRL+       G+ R    H  GI++      +    P+      
Sbjct: 1035 -------------EIDRLVA---GCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADA 1078

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
              S+   T F+   I    ++K D LG    T ++   D        +D   IP DD + 
Sbjct: 1079 TDSEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPDV 1132

Query: 609  YHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              L               +  GTLGI +  +  +RQ LE  +P    +++ +  L     
Sbjct: 1133 MKLFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHGTD 1192

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEAD 711
            +                 +   LI     E   VI  ++ +M       L S  +    +
Sbjct: 1193 VWLG--------------NAEELIKNKTCELPDVIGCRDDIMVFLIYQGLESSLAFKIME 1238

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +R+   K + +EM++             +        +    K   Y F K+HAAAY +
Sbjct: 1239 SVRKG--KGLTDEMEEA------------MMANKVPLWYIESCKKIKYMFPKAHAAAYVL 1284

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------------------- 800
            ++ + A+ K H+P+ F A   T+  D+ +                               
Sbjct: 1285 MAVRIAYFKVHHPLFFYATYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKN 1344

Query: 801  --KIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
               + +   +               +   +F +  + +     AI  +GT  A+ I+ A 
Sbjct: 1345 LLTVLEIANEMLARGFHFQKVDLYKSSADEFLIDGDSLIPPFNAIPSLGTNVAKQIVAAR 1404

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             +  F S ED   R    K+++ +++ +   G L+  
Sbjct: 1405 ENGEFLSKEDLQQR---GKVSKTIIQYMDDQGCLEGL 1438



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 345 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 404


>gi|153938397|ref|YP_001391721.1| DNA polymerase III PolC [Clostridium botulinum F str. Langeland]
 gi|152934293|gb|ABS39791.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum F str. Langeland]
 gi|295319747|gb|ADG00125.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum F str. 230613]
          Length = 1432

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 169/910 (18%), Positives = 314/910 (34%), Gaps = 183/910 (20%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
               +++L   A G + L +LVS+  L +   +  R+  S + E   EGLI+ +   +G I
Sbjct: 606  TYHLIILAKNAVGLKNLYKLVSKSNL-EYFFKRPRMAKSLINEY-KEGLIIGSACEAGQI 663

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVV 201
             +      ++   K ++ F        Y+ +Q     +              +    ++ 
Sbjct: 664  YKEILKGKTKEELKNMIDFYD------YLEIQPLGNNEFLVKNGSVKDEKELQEINKKIC 717

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +L   +  P+VAT +  FL EE      +LM+    +           P  Y +   EM+
Sbjct: 718  ELGEFYNKPVVATCDVHFLDEEHEVFRRILMSGQGFSDADN------QPPLYFRTTEEML 771

Query: 262  SIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
              F  L E  A E  +    + + ++    PI       + +      E ++R   +   
Sbjct: 772  KEFEYLGEEKAKEVVIYNTNKIADMIDEIKPIPEETFPPKIEGA----EEDIRRMTIEKA 827

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                   AI      +   +RL  ELN I    ++  +LI    +  + ++   VG  RG
Sbjct: 828  H------AIYGDPLPEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SRG 880

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S  A    IT+++ L                                         
Sbjct: 881  SVGSSFAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIKD 940

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A 
Sbjct: 941  GHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTAY 1000

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V + L                                 +  +  +  ++RL   S+  
Sbjct: 1001 GFVKKYLDE-------------------------------KNIKANNAEIERL---SKGC 1026

Query: 519  EGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDF 573
             G+ R +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D 
Sbjct: 1027 TGVKRTSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSI-SGRLLKLDI 1085

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            LG    T+L+   D        VD   +P  D +   L T+   LG+ + +         
Sbjct: 1086 LGHDDPTILRMLQDLTK-----VDPKSVPLGDPKVISLFTSPEALGVTEEDID-CPVGTY 1139

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQ 692
            G+     + +  ++   +P     +   +   +G +  ++     I       +  I  +
Sbjct: 1140 GLPEFGTKFVRQMLLDTKPKSFAELARISGLSHGTDVWLNNAQYFIKEGYTTIKDCISTR 1199

Query: 693  EQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            + +M      +L    + +  + +R+   K + EE +              + +    + 
Sbjct: 1200 DDIMVYLLQKELPPKSAFTIMEKVRKG--KGLTEEQEAL------------MKEHDVPDW 1245

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------- 800
            +    K   Y F K HA AY +++ + A+ K +YP  + A   ++  D+ +         
Sbjct: 1246 YIESCKKIKYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADLIVKGEE 1305

Query: 801  KIK------------------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRI 835
            KIK                        + C +  +  I+ +   +       F +  + I
Sbjct: 1306 KIKEKMNELYAMGNNIAQKDKGLLTILEICYEMYKRGIKFLKVDLYKSNATKFLIEGDNI 1365

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L+A++GVG   A+ I EA  +  F S ED   R    K     LE+    G L    
Sbjct: 1366 RPPLSALQGVGKNAAKSIEEARLEGEFISKEDLRLRTKVTKTVIETLEN---HGCLRGMQ 1422

Query: 896  YSRMQLLQSL 905
             +    L SL
Sbjct: 1423 ETNQISLFSL 1432



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++G   ++ ++ + A     A+AITD   + +  +    A    I+ I 
Sbjct: 333 VELHMHSQMSAMDGMTPVSELVKRAAKWGHKAVAITDHGVVQAYPDAMSAAKKGNIKVIY 392


>gi|256617164|ref|ZP_05474010.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|256596691|gb|EEU15867.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
          Length = 1440

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 173/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 574  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 626

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 627  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 684

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 685  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 744

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 745  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEV 801

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 802  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 844

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 845  EKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 903

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 904  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 963

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 964  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1007

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1008 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1049

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1050 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1103

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1104 IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1163

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1164 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1212

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1213 DSGLAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1264

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1265 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1324

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1325 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1384

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1385 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLLDENQLSLFDML 1440



 Score = 77.7 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 38/98 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 328 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 387

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
           G + +I         N+          +V  V T  G 
Sbjct: 388 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVETTTGL 425


>gi|56963998|ref|YP_175729.1| DNA polymerase III PolC [Bacillus clausii KSM-K16]
 gi|56910241|dbj|BAD64768.1| DNA polymerase III alpha subunit PolC [Bacillus clausii KSM-K16]
          Length = 1430

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 181/914 (19%), Positives = 317/914 (34%), Gaps = 193/914 (21%)

Query: 87   NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146
             QG           LLV++  G + L +LVS  ++ D   ++ RI  S L +   EGL++
Sbjct: 595  GQGNFHRQRPFHCTLLVTSQTGLKNLYQLVSMSHV-DYYFRTPRIPRSQLNK-HREGLLI 652

Query: 147  LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-------FGDRLYVNLQRHRGYDRYRESQ 199
             +    G +       S+   EK    +  L       +G  +   L + +   +     
Sbjct: 653  GSACDKGEVFEGMMQKSADEVEKIAGFYDFLEIQPLGNYGHLIERELVKDKTALQEIVGN 712

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V L     LP+VAT N  +L+EED     +L+A         K +    PD + +  +E
Sbjct: 713  IVALGERLGLPVVATGNVHYLNEEDAIYRKILIASQGGANPLNKQKL---PDVHFRTTTE 769

Query: 260  MVSIFSDLP-EALENTVEIA-RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
            M+  FS L  E  E  V  A    +  +    PI       + +      ++E+RN +  
Sbjct: 770  MLEEFSFLGAEQAEKVVVTASNDIAAQVGDVHPIPDDLYAPKIEGA----DDEIRNMSYE 825

Query: 318  GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
              ++             +    RL  EL  I    F+  +LI    ++ +  +   VG  
Sbjct: 826  RAKMIYGDPL------PEIVEARLQKELKSIIGHGFAVIYLISHKLVKKSLDDGYLVG-S 878

Query: 378  RGSGAGSVTAYALTITDIDPLRF------------------------------------- 400
            RGS   S  A    IT+++PL                                       
Sbjct: 879  RGSVGSSFVATMTEITEVNPLPPHYVCPSCKHSHFFDDGSVASGYDLPDAECPKCGSMYI 938

Query: 401  ----SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
                 + FE FL      +PD D++F  + +     Y +  +G + V +  T G++  K 
Sbjct: 939  KDGQDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHAYTKELFGEDYVYRAGTIGTVADKT 998

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A   V +  Q  +  + R                                 +DRL+    
Sbjct: 999  AYGYV-KGYQNDHDLLMRGA------------------------------EIDRLVA--- 1024

Query: 517  KLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKF 571
               G+ R    H  GI++      +    P+     D  ++   T F+   I    L+K 
Sbjct: 1025 GCTGVKRTTGQHPGGIIVVPDYMDIHDFSPIQYPADDKNAEWKTTHFDFHSIHD-NLLKL 1083

Query: 572  DFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY--------------HLLTTKGT 617
            D LG    T ++   D        +D   IP DD E                 +L   GT
Sbjct: 1084 DILGHDDPTAIRMLQDL-----SGIDPKTIPTDDPEVMKIFASPDVLGVTEEQILCKTGT 1138

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            LGI +  +  +RQ LE  +P    +++ +  L     +                 + + L
Sbjct: 1139 LGIPEFGTRFVRQMLEETKPSTFSELLQISGLSHGTDVWLG--------------NANEL 1184

Query: 678  IDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            I     E + VI  ++ +M       L S  +    + +R+  G          +  ++ 
Sbjct: 1185 IYNGTCELKDVIGCRDDIMVYLIYKGLESSLAFKIMEFVRKGKG---------LQPEWVE 1235

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               K+ +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ + A   T+
Sbjct: 1236 EMKKHDVPDWYIDSCTKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHPILYYATYFTV 1290

Query: 795  EMDNVE---------KIKKFCQDARQFNIQIMPPS------------------------- 820
              D+ E          I+   ++     +   P                           
Sbjct: 1291 RADDFELDIMIKGASSIRAKMEEINAKGLDASPKEKAVLTVLELSLEMCERGFGFHKVDL 1350

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
              +   +F V  +++     A+ GVGT  A +I++A  +  F S ED   R    K    
Sbjct: 1351 YKSSATEFIVDGDKLLPPFNALNGVGTNAALNIVKARENGHFLSKEDLQQRARLTKT--- 1407

Query: 881  VLESLVFAGALDCF 894
            V+E+L   G L+  
Sbjct: 1408 VVENLSEHGCLEGL 1421



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S ++G +S+   +++ A    PAIAITD   + +  E    A    I+ I 
Sbjct: 330 VELHTHSTMSQMDGVVSVGRYIEQAAKWGHPAIAITDHGVVQAFPEAYGAAKKHDIKVIY 389

Query: 72  GC 73
           G 
Sbjct: 390 GM 391


>gi|148380379|ref|YP_001254920.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str. ATCC
            3502]
 gi|153932951|ref|YP_001384598.1| DNA polymerase III PolC [Clostridium botulinum A str. ATCC 19397]
 gi|153935522|ref|YP_001388114.1| DNA polymerase III PolC [Clostridium botulinum A str. Hall]
 gi|148289863|emb|CAL83971.1| DNA polymerase III PolC-type [Clostridium botulinum A str. ATCC 3502]
 gi|152928995|gb|ABS34495.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum A str. ATCC 19397]
 gi|152931436|gb|ABS36935.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum A str. Hall]
          Length = 1432

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 169/910 (18%), Positives = 316/910 (34%), Gaps = 183/910 (20%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
               +++L   A G + L +LVS+  L +   +  R+  S + E   EGLI+ +   +G I
Sbjct: 606  THHLIILAKNAVGLKNLYKLVSKSNL-EYFFKRPRMAKSLINEY-KEGLIIGSACEAGQI 663

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVV 201
             +      ++   K ++ F        Y+ +Q     +                   ++ 
Sbjct: 664  YKEILKGKTKEELKNMIDFYD------YLEIQPLGNNEFLVKNGSVKDEKELEEINKKIC 717

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +L   +  P+VAT +  FL EE      +LM+    +           P  Y +   EM+
Sbjct: 718  ELGEFYNKPVVATCDVHFLDEEHEVFRRILMSGQGFSDADN------QPPLYFRTTEEML 771

Query: 262  SIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
              F  L E  A E  +    + + ++    PI       + +      E ++R   +   
Sbjct: 772  KEFEYLGEEKAKEVVIYNTNKIADMIDEIKPIPEETFPPKIEGA----EEDIRRMTIEKA 827

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                   +I      +   +RL  ELN I    ++  +LI    +  + ++   VG  RG
Sbjct: 828  H------SIYGDPLPEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SRG 880

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S  A    IT+++ L                                         
Sbjct: 881  SVGSSFAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIKD 940

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A 
Sbjct: 941  GHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTAY 1000

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V + L                                 +  +  +  ++RL   S+  
Sbjct: 1001 GFVKKYLDE-------------------------------KNIKANNAEIERL---SKGC 1026

Query: 519  EGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDF 573
             G+ R +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D 
Sbjct: 1027 TGVKRTSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSI-SGRLLKLDI 1085

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            LG    T+L+   D       +VD   +P  D +   L T+   LG+ + +         
Sbjct: 1086 LGHDDPTVLRMLQDL-----TQVDPKSVPLGDPKVISLFTSPEALGVTEEDID-CPVGTY 1139

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQ 692
            G+     + +  ++   +P     +V  +   +G +  ++     I       +  I  +
Sbjct: 1140 GLPEFGTKFVRQMLLDTKPKSFAELVRISGLSHGTDVWLNNAQYFIKEGYTTIKDCISTR 1199

Query: 693  EQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            + +M      +L    + +  + +R+   K + EE +              + +    + 
Sbjct: 1200 DDIMVYLLQKELPPKSAFTIMEKVRKG--KGLTEEQEAL------------MKEHDVPDW 1245

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------- 800
            +    K   Y F K HA AY +++ + A+ K +YP  + A   ++  D+ +         
Sbjct: 1246 YIESCKKIKYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADLIVKGEE 1305

Query: 801  KIK------------------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRI 835
            KIK                        + C +  +  I+ +   +       F +  + I
Sbjct: 1306 KIKEKMNELYAMGNNITQKDKGLLTILEICYEMYKRGIKFLKVDLYKSNATKFLIEGDSI 1365

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L+A++GVG   A+ I EA  +  F S ED   R  + K     LE+    G L    
Sbjct: 1366 RPPLSALQGVGKNAAKSIEEARLEGEFISKEDLRLRTKATKTVIETLEN---HGCLRGMQ 1422

Query: 896  YSRMQLLQSL 905
             +    L SL
Sbjct: 1423 ETNQISLFSL 1432



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++G   ++ ++ + A     A+AITD   + +  +    A    I+ I 
Sbjct: 333 VELHMHSQMSAMDGMTPVSELVKRAAKWGHKAVAITDHGVVQAYPDAMSAAKKGNIKVIY 392


>gi|182419729|ref|ZP_02950970.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum 5521]
 gi|237665534|ref|ZP_04525522.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum E4 str. BoNT E BL5262]
 gi|182376466|gb|EDT74047.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum 5521]
 gi|237658481|gb|EEP56033.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum E4 str. BoNT E BL5262]
          Length = 1472

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 163/907 (17%), Positives = 308/907 (33%), Gaps = 191/907 (21%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                 ++L     G + L +LVS  +L D   +  RI  S  ++  +EGLI+ +  S G 
Sbjct: 637  RTHHAIILAKDYTGLKNLYKLVSYSHL-DYFYKKPRILKSMFKKY-SEGLILGSACSEGE 694

Query: 155  IDRAFFFNSSQVAEKRL------LTFKKLFGDRLYV--NLQRHRGYDRYRESQVVQLAYT 206
            + ++     S    + +      L  + +  D   +      ++ Y +    +++ L   
Sbjct: 695  LFQSILLGKSDEEIENIAKDYDYLEIQPIGNDDYLIRNEQVPNKEYIKEINRKIISLGEK 754

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
                +VAT +  F+  ED     +L A                   YLK   EM+  FS 
Sbjct: 755  LGKLVVATGDVHFMDPEDEIYRRILEAGQGFKDADM------QAPLYLKTTEEMLEEFSY 808

Query: 267  LPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
            L E  A E  V    + S + +  +PI P       D  ++  ++    KA       L 
Sbjct: 809  LGEEKAYEVVVTNTNKISEMCEQISPISPEKCPPHIDGCEQTIKDIAYGKAHELYGENL- 867

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                      +  + RL+ EL+ I +  FS  ++I    +  +  +   VG  RGS   S
Sbjct: 868  ---------PKIVKDRLEKELDSIIKNGFSVMYIIAQKLVWKSNDDGYLVG-SRGSVGSS 917

Query: 385  VTAYALTITDIDPLRF----------------------------------------SLLF 404
            V AY   IT+++ L                                           + F
Sbjct: 918  VVAYMTGITEVNALPPHYRCPKCKYSDFNDYGSKNGFDLPDKVCPACGENMDKDGMDIPF 977

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  +    PD D++F  + + +  +Y +  +G     +  T G++  K A   V + 
Sbjct: 978  ETFLGFNGDKEPDIDLNFSGEYQAKAHKYTEVIFGKGTTFKAGTIGTIAEKTAFGYVKKY 1037

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
             +    +   + K                                 +  I++   G+ R 
Sbjct: 1038 YE---EKSQTITKA-------------------------------EITRIAKGCTGIKRT 1063

Query: 525  ASTHAAGIVIGD--RPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GI++    R + +  P+     D  SD+  T F+   I++  L+K D LG    
Sbjct: 1064 TGQHPGGIIVVPKGREIFEFCPVQHPADDPDSDIITTHFDYHSIDQ-NLLKLDILGHDDP 1122

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLES 625
            T+++   D        ++   IP DD ET  L ++               GT GI +  +
Sbjct: 1123 TVIRMLQDITG-----INPHTIPLDDKETMSLFSSTTALGVTPEQINSKVGTFGIPEFGT 1177

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
              +R  L    P    D++ +  L     +          N K+ I +       ++   
Sbjct: 1178 KFVRGMLVDTLPKTFSDLLCISGLSHGTDVWLG-------NAKDLIDT------GVITSI 1224

Query: 686  QGVIIYQEQVMQIAQLL---SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
               +  ++ +M     +      +    +++R+    K  E+  + +           + 
Sbjct: 1225 SDAVCCRDDIMVYLIKMNLPPNTAFKIMELVRKGQALKNPEKWAEYEAL---------MR 1275

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-- 800
            +      +    K   Y F K+HAAAY +++++ AW K H P  + AA  ++     +  
Sbjct: 1276 ENDVPEWYIDSCKKIKYMFPKAHAAAYVMMAFRIAWFKVHIPKAYYAAYFSIRAKAFDAE 1335

Query: 801  -----------KIKKFCQ--------------------DARQFNIQIMPPS-VNTPCVDF 828
                       K+ +                       +  +   + +P     +    F
Sbjct: 1336 FMIFGKDRVKEKMAEILAQGNDAAPKDKDMYDDLEIVLEMYERGFKFLPIDLYKSDATKF 1395

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            KV +  +   L +I G+G+  A  I     + +P  S+++   R         +L     
Sbjct: 1396 KVEEEGLRPPLNSIAGMGSVAAESIYATVHEIEPISSVDNLKKRAKIGNSATDLLR---K 1452

Query: 888  AGALDCF 894
             G L+  
Sbjct: 1453 FGCLNGM 1459



 Score = 69.6 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           V L +H+  S ++   S  +++ +  +    +IAITD   + +  E  +
Sbjct: 359 VELHMHTKMSQMDAMSSAGDLIKRAMSWGMKSIAITDHGVVQAFPEAHK 407


>gi|322806689|emb|CBZ04258.1| DNA polymerase III alpha subunit [Clostridium botulinum H04402 065]
          Length = 1432

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 169/910 (18%), Positives = 316/910 (34%), Gaps = 183/910 (20%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
               +++L   A G + L +LVS+  L +   +  R+  S + E   EGLI+ +   +G I
Sbjct: 606  TYHLIILAKNAVGLKNLYKLVSKSNL-EYFFKRPRMAKSLINEY-KEGLIIGSACEAGQI 663

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVV 201
             +      ++   K ++ F        Y+ +Q     +              +    ++ 
Sbjct: 664  YKEILKGKTKEELKNMIDFYD------YLEIQPLGNNEFLVKNGSVKDEKELQEINKKIC 717

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +L   +  P+VAT +  FL EE      +LM+    +           P  Y +   EM+
Sbjct: 718  ELGEFYNKPVVATCDVHFLDEEHEVFRRILMSGQGFSDADN------QPPLYFRTTEEML 771

Query: 262  SIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
              F  L E  A E  +    + + ++    PI       + +      E ++R   +   
Sbjct: 772  KEFEYLGEEKAKEVVIYNTNKIADMIDEIKPIPEETFPPKIEGA----EEDIRRMTIEKA 827

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                   +I      +   +RL  ELN I    ++  +LI    +  + ++   VG  RG
Sbjct: 828  H------SIYGDPLPEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SRG 880

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S  A    IT+++ L                                         
Sbjct: 881  SVGSSFAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIKD 940

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A 
Sbjct: 941  GHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTAY 1000

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V + L                                 +  +  +  ++RL   S+  
Sbjct: 1001 GFVKKYLDE-------------------------------KNIKANNAEIERL---SKGC 1026

Query: 519  EGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDF 573
             G+ R +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D 
Sbjct: 1027 TGVKRTSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSI-SGRLLKLDI 1085

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            LG    T+L+   D       +VD   +P  D +   L T+   LG+ + +         
Sbjct: 1086 LGHDDPTVLRMLQDL-----TQVDPKSVPLGDPKVISLFTSPEALGVTEEDID-CPVGTY 1139

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQ 692
            G+     + +  ++   +P     +V  +   +G +  ++     I       +  I  +
Sbjct: 1140 GLPEFGTKFVRQMLLDTKPKSFAELVRISGLSHGTDVWLNNAQYFIKEGYTTIKDCISTR 1199

Query: 693  EQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            + +M      +L    + +  + +R+   K + EE +              + +    + 
Sbjct: 1200 DDIMVYLLQKELPPKSAFTIMEKVRKG--KGLTEEQEAL------------MKEHDVPDW 1245

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------- 800
            +    K   Y F K HA AY +++ + A+ K +YP  + A   ++  D+ +         
Sbjct: 1246 YIESCKKIKYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADLIVKGEE 1305

Query: 801  KIK------------------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRI 835
            KIK                        + C +  +  I+ +   +       F +  + I
Sbjct: 1306 KIKEKMNELYAMGNNITQKDKGLLTILEICYEMYKRGIKFLKVDLYKSNATKFLIEGDSI 1365

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L+A++GVG   A+ I EA  +  F S ED   R    K     LE+    G L    
Sbjct: 1366 RPPLSALQGVGKNAAKSIEEARLEGEFISKEDLRLRTKVTKTVIETLEN---HGCLRGMQ 1422

Query: 896  YSRMQLLQSL 905
             +    L SL
Sbjct: 1423 ETNQISLFSL 1432



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++G   ++ ++ + A     A+AITD   + +  +    A    I+ I 
Sbjct: 333 VELHMHSQMSAMDGMTPVSELVKRAAKWGHKAVAITDHGVVQAYPDAMSAAKKGNIKVIY 392


>gi|270290316|ref|ZP_06196541.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4]
 gi|270281097|gb|EFA26930.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4]
          Length = 1436

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 171/944 (18%), Positives = 308/944 (32%), Gaps = 200/944 (21%)

Query: 58   FSQKACA-AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+        +   D  K               VL+  T  G + L +LV
Sbjct: 579  FLKDAEERYGIEYHDQLNDHMTENDAYKHARPN--------HAVLIAKTQAGLKNLFKLV 630

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +     +  RI  S L+ +  EG+I+ +  SSG +  A        A  R   +  
Sbjct: 631  SLSNVK-YFYRVPRIPRSELERL-REGIIVGSACSSGEVFTAMAQKGYVEARDRAKFYDY 688

Query: 175  -----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                 K ++   +   +             +V+L    ++P+VAT +  +L+ +D     
Sbjct: 689  LEVMPKPVYQPLIDQEIVSDTNKLEEIIGNIVKLGKDLDIPVVATGDVHYLNPQDAIYRK 748

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQV 287
            +L+        +        PD + +   EM+  F  L E  A +  VE   + +  +  
Sbjct: 749  ILINSQGG---ANPLNRTELPDVHFRTTDEMLEAFRFLGEETAHQIVVENPNQIADSIDD 805

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
             +P+  +    +        E+ ++  A+        +         +   +RLD EL  
Sbjct: 806  ISPVKDKLYTPKMPGA----EDRIKQLAMDQAHALYGKEL------PEIVSERLDKELTS 855

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------- 400
            I    FS  +LI    +  + K+   VG  RGS   S  A    IT+++PL         
Sbjct: 856  IIGNGFSVIYLIAQRLVHKSNKDGYLVG-SRGSVGSSFVATMSGITEVNPLPPHYRCPNC 914

Query: 401  ----------------------------------SLLFERFLNPDRMSMPDFDIDFCQDR 426
                                               + FE FL      +PD D++F  D 
Sbjct: 915  QYSHFYTKGEYGSGYDLPDKKCPECGTLMIGDGQDIPFETFLGFKGDKVPDIDLNFSGDY 974

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +     Y+Q  +G   V +  T G++  K A   V +A +   +Q               
Sbjct: 975  QPIAHNYMQVLFGKNNVFRAGTIGTVADKTAYGYV-KAYERDTNQ--------------- 1018

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVP 544
                        R A         +  +++   G+ R    H AGI+I      +    P
Sbjct: 1019 ----------HLRGA--------EIERLAKGATGVKRTTGQHPAGILIVPDYMDIYDFSP 1060

Query: 545  MYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            +             T F+   I    ++K D LG    T+++K  D        +D   I
Sbjct: 1061 IQYPADDQTAAWETTHFDFHSIHD-NILKMDILGHDDPTMIRKLQDL-----SGIDPQTI 1114

Query: 602  PFDDHETYHLLT--------------TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            P DD     + +                GTLGI +  +  +R  LE   P    +++ + 
Sbjct: 1115 PTDDPGVMKIFSGPEVLGVTEEQIKSKTGTLGIPEFGTRFVRGMLEETHPTTYSELLQIS 1174

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS- 706
             L     +                 +   LI       + VI  ++ +M         S 
Sbjct: 1175 GLSHGTDVWLG--------------NAEELIKAGTITLKDVIGCRDNIMMDLIHYGLDSQ 1220

Query: 707  --LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
                  + +R+   K I E              +  +      + +        Y F ++
Sbjct: 1221 SSFKIMESVRKG--KGIPEG------------YEEKMRAANVPDWYIESCGKIKYMFPRA 1266

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK--------------------- 803
            HA+AY +++ + A+ K +YP+ + AA  T+  D+ + +                      
Sbjct: 1267 HASAYVLMALRIAYFKVYYPLVYYAAYFTVRADDFDIVAMSRGKESLKNRMQEINDKGNE 1326

Query: 804  ------------KFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +  +         +      ++ +  + +     A+ G+G   A
Sbjct: 1327 ASAKEKNLLTVLELANEMVERGFNFKMIDLEKSDAEEWLIDGDSLIAPFNALPGLGLNVA 1386

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVL-ESLVFAGALDC 893
            + I+ A ADKPF S ED   R    +     + E+ V AG  D 
Sbjct: 1387 KQIVAARADKPFLSKEDLAKRGHVSQTLIDFMTENNVLAGLPDE 1430



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   S+++ + + A    PAIA+TD   L +  E       +G++P+ 
Sbjct: 334 VELHLHTNMSTMDATNSISDFVSQAAKWGHPAIAVTDHAGLQAFPEAYAAGKKSGVKPLF 393

Query: 72  GC 73
           G 
Sbjct: 394 GV 395


>gi|217964533|ref|YP_002350211.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            monocytogenes HCC23]
 gi|217333803|gb|ACK39597.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            monocytogenes HCC23]
 gi|307570901|emb|CAR84080.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
            monocytogenes L99]
          Length = 1443

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 172/935 (18%), Positives = 304/935 (32%), Gaps = 194/935 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            I+                   +G       P    +   TA G + L +L++   + +  
Sbjct: 587  IKDAKEMHDIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYF 645

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLF 178
             +  RI  S L+++  EGLI+ T  S G +  A      Q AEK    +       K ++
Sbjct: 646  YRVPRIPRSQLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVY 704

Query: 179  GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               +   L R           +V++      P+VAT N  +    D     +L+      
Sbjct: 705  APLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILIHSQGG- 763

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFI 296
              +        PD + +   EM+  F+ L E  A E  V  +      ++   PI     
Sbjct: 764  --ANPLNRAELPDVHFRTTDEMLKEFAFLGEEKAKEIVVTNSNLVVDWMEDLKPIKDELY 821

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              + D      E+E+RN +         +         +    RL+ EL  I    F+  
Sbjct: 822  TPKIDGA----EDEVRNMSYEMAHQLYGENL------PEIVEARLEKELKSIIGHGFAVI 871

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------- 403
            +LI    ++ +  +   VG  RGS   S  A    IT+++PL    L             
Sbjct: 872  YLISHKLVKKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDG 930

Query: 404  ----------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                        FE FL      +PD D++F  D +     Y +
Sbjct: 931  SVGSGFDLPDKDCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTK 990

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G + V +  T G++  K A   V R  +   +   R                     
Sbjct: 991  EIFGEDYVFRAGTIGTVAEKTAFGYV-RNYERDMNMTIRGA------------------- 1030

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVR 550
                        +DRL+       G+ R    H  GI++      +    P+        
Sbjct: 1031 -----------EIDRLVA---GCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATD 1076

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
            S+   T F+   I    ++K D LG    T ++   D        +D   IP DD +   
Sbjct: 1077 SEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPDVMK 1130

Query: 611  LL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            L               +  GTLGI +  +  +RQ LE  +P    +++ +  L     + 
Sbjct: 1131 LFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHGTDVW 1190

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVL 713
                            +   LI     E   VI  ++ +M       L S  +    + +
Sbjct: 1191 LG--------------NAEELIKNKTCELPDVIGCRDDIMVFLIYQGLESSLAFKIMESV 1236

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+   K + +EM++             +        +    K   Y F K+HAAAY +++
Sbjct: 1237 RKG--KGLTDEMEEA------------MMANKVPLWYIESCKKIKYMFPKAHAAAYVLMA 1282

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVE--------------------------------- 800
             + A+ K H+P+ F A   T+  D+ +                                 
Sbjct: 1283 VRIAYFKVHHPLFFYATYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLL 1342

Query: 801  KIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
             + +   +               +   +F +  + +     AI  +GT  A+ I+ A  +
Sbjct: 1343 TVLEIANEMLARGFHFQKVDLYKSSADEFLIDGDSLIPPFNAIPSLGTNVAKQIVAAREN 1402

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              F S ED   R    K+++ +++ +   G L+  
Sbjct: 1403 GEFLSKEDLQQR---GKVSKTIIQYMDDQGCLEGL 1434



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 341 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 400


>gi|304384865|ref|ZP_07367211.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284]
 gi|304329059|gb|EFL96279.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284]
          Length = 1436

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 171/944 (18%), Positives = 308/944 (32%), Gaps = 200/944 (21%)

Query: 58   FSQKACA-AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+        +   D  K               VL+  T  G + L +LV
Sbjct: 579  FLKDAEERYGIEYHDQLNDHMTENDAYKHARPN--------HAVLIAKTQAGLKNLFKLV 630

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +     +  RI  S L+ +  EG+I+ +  SSG +  A        A  R   +  
Sbjct: 631  SLSNVK-YFYRVPRIPRSELERL-REGIIVGSACSSGEVFTAMAQKGYVEARDRAKFYDY 688

Query: 175  -----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                 K ++   +   +             +V+L    ++P+VAT +  +L+ +D     
Sbjct: 689  LEVMPKPVYQPLIDQEIVSDTNKLEEIIGNIVKLGKDLDIPVVATGDVHYLNPQDAIYRK 748

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQV 287
            +L+        +        PD + +   EM+  F  L E  A +  VE   + +  +  
Sbjct: 749  ILINSQGG---ANPLNRTELPDVHFRTTDEMLEAFRFLGEETAHQIVVENPNQIADSIDD 805

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
             +P+  +    +        E+ ++  A+        +         +   +RLD EL  
Sbjct: 806  ISPVKDKLYTPKMPGA----EDRIKQLAMDQAHALYGKEL------PEIVSERLDKELTS 855

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------- 400
            I    FS  +LI    +  + K+   VG  RGS   S  A    IT+++PL         
Sbjct: 856  IIGNGFSVIYLIAQRLVHKSNKDGYLVG-SRGSVGSSFVATMSGITEVNPLPPHYRCPNC 914

Query: 401  ----------------------------------SLLFERFLNPDRMSMPDFDIDFCQDR 426
                                               + FE FL      +PD D++F  D 
Sbjct: 915  QYSHFYTKGEYGSGYDLPDKKCPECGTLMIGDGQDIPFETFLGFKGDKVPDIDLNFSGDY 974

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +     Y+Q  +G   V +  T G++  K A   V +A +   +Q               
Sbjct: 975  QPIAHNYMQVLFGKNNVFRAGTIGTVADKTAYGYV-KAYERDTNQ--------------- 1018

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVP 544
                        R A         +  +++   G+ R    H AGI+I      +    P
Sbjct: 1019 ----------HLRGA--------EIERLAKGATGVKRTTGQHPAGILIVPDYMDIYDFSP 1060

Query: 545  MYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            +             T F+   I    ++K D LG    T+++K  D        +D   I
Sbjct: 1061 IQYPADDQTAAWETTHFDFHSIHD-NILKMDILGHDDPTMIRKLQDL-----SGIDPQTI 1114

Query: 602  PFDDHETYHLLT--------------TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            P DD     + +                GTLGI +  +  +R  LE   P    +++ + 
Sbjct: 1115 PTDDPGVMKIFSGPEVLGVTEEQIKSKTGTLGIPEFGTRFVRGMLEETHPTTYSELLQIS 1174

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS- 706
             L     +                 +   LI       + VI  ++ +M         S 
Sbjct: 1175 GLSHGTDVWLG--------------NAEELIKAGTITLKDVIGCRDNIMMDLIHYGLDSQ 1220

Query: 707  --LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
                  + +R+   K I E              +  +      + +        Y F ++
Sbjct: 1221 SSFKIMESVRKG--KGIPEG------------YEEKMRAANVPDWYIESCGKIKYMFPRA 1266

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK--------------------- 803
            HA+AY +++ + A+ K +YP+ + AA  T+  D+ + +                      
Sbjct: 1267 HASAYVLMALRIAYFKVYYPLVYYAAYFTVRADDFDIVAMSRGKESLKNRMQEINDKGNE 1326

Query: 804  ------------KFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +  +         +      ++ +  + +     A+ G+G   A
Sbjct: 1327 ASAKEKNLLTVLELANEMVERGFNFKMIDLEKSDAEEWLIDGDSLIAPFNALPGLGLNVA 1386

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVL-ESLVFAGALDC 893
            + I+ A ADKPF S ED   R    +     + E+ V AG  D 
Sbjct: 1387 KQIVAARADKPFLSKEDLAKRGHVSQTLIDFMTENNVLAGLPDE 1430



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   S+++ + + A    PAIA+TD   L +  E       +G++P+ 
Sbjct: 334 VELHLHTNMSTMDATNSISDFVSQAAKWGHPAIAVTDHAGLQAFPEAYAAGKKSGVKPLF 393

Query: 72  GC 73
           G 
Sbjct: 394 GV 395


>gi|258511408|ref|YP_003184842.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            subsp. acidocaldarius DSM 446]
 gi|257478134|gb|ACV58453.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            subsp. acidocaldarius DSM 446]
          Length = 1440

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 189/954 (19%), Positives = 320/954 (33%), Gaps = 198/954 (20%)

Query: 45   AITDTNNLFSA-LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
            A+ D+       +   + A A GI  ++             +  Q            +LV
Sbjct: 572  ALADSEATAKVFVHMLKDAKARGIHNLLDMNH---------LRGQIDISRVRPFHATVLV 622

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
               EG + L  LVS  +      +  RI  S L     EGL++ T    G +  AFF   
Sbjct: 623  RNREGLRNLYRLVSIAHT-QYLHRVPRIPKSALAR-HREGLLIGTACRQGELVEAFFRGK 680

Query: 164  SQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVVQLAYTHEL 209
            S+     LL F        Y+ +Q    Y+              R     +V++      
Sbjct: 681  SEDEIDTLLEFYD------YLEIQPVSHYEPLVREGVVASFEQVRELLRNIVEIGKRLNK 734

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT +  +L E D    ++ +                 P  + +   EM+  F+ L E
Sbjct: 735  PVVATGDVHYLDEHDAIFREIFLQSQKLDTK--------QPPLHFRTTDEMLEEFAFLGE 786

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE---VRLAQG 326
                TV I               PR +   CDD+ K   +EL    + G E    RLA  
Sbjct: 787  EDARTVVIDN-------------PRRLAALCDDV-KPIPDELHTPVIEGAEDEIRRLAYD 832

Query: 327  AIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
               + Y     +   +RL+ ELN I    ++  +LI    +  +  +   VG  RGS   
Sbjct: 833  KAKRIYGDPLPELVEKRLERELNAIISHGYAVIYLIAHKLVTKSLSDGYLVG-SRGSVGS 891

Query: 384  SVTAYALTITDIDPLRF-----------------------------------------SL 402
            S+ A    IT+++PL                                            +
Sbjct: 892  SLVATMTDITEVNPLPPHYVCLSCHYHEFFLRGEYGSGFDLPDKACPNCGAKLHKDGQDI 951

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE F+  D   +PD D++F  + +    RY +  +G + V +  T   +  K A   V 
Sbjct: 952  PFETFMGFDGDKVPDIDLNFSGEYQPRAHRYTEELFGKDHVFRAGTISVVAEKTAYGYVR 1011

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            +                                +  R   L +  ++RL+   +   G+ 
Sbjct: 1012 KF-------------------------------AEERGLVLRNAEIERLV---RGCTGVK 1037

Query: 523  RHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H  G V+      +    P+     D  S+   T F+     +  L+K D LG  
Sbjct: 1038 RTTGQHPGGQVVVPHYVEIYDFTPIQYPADDTSSETLTTHFDYHSGLENCLLKLDILGHD 1097

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
              T+++   D        VD   IP DD +   L  +   LG+   E          +  
Sbjct: 1098 DPTVIRMLQDLTG-----VDPKSIPLDDPDVLELFRSTRPLGVTPEEIRSTTGTY-AIPE 1151

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM 696
                 +  ++   RP     +V  +   +G +  + +   LI   +     VI  ++ +M
Sbjct: 1152 FGTRFVRQMLEDTRPTTFSELVRISGLSHGTDVWLNNAQTLIREQIATLSEVICARDDIM 1211

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
             +  +  G   + A  +   + K             +    +  + +    + +    K 
Sbjct: 1212 -LYLIQKGLDPARAFKIMEGIRKGKG----------VKPEDEAYMREHGVPDWYIESGKK 1260

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQ 807
              Y F K+HAAAY +++ + AW K H P+ F A   T+  D+ +          I K   
Sbjct: 1261 IKYMFPKAHAAAYVLMAVRIAWFKVHRPLAFYATYFTVRADDFDVAVMTAGREAILKKID 1320

Query: 808  D---------ARQF---------------NIQIMPPS-VNTPCVDFKVGDNRI--YYSLA 840
            +         A++                  + +P     +    F + +         A
Sbjct: 1321 EIEAKGNAASAKEKSFLTVLEVALEMVARGYRFLPIDLYKSHATQFLIEEEARGLRPPFA 1380

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            AI G+G T AR++ EA+    F SLED  SR  + +    VL   +  G LD  
Sbjct: 1381 AIPGIGETAARNLYEAAQQGEFLSLEDLQSRARASRAVIDVL---MELGCLDGL 1431



 Score = 87.7 bits (216), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 41/98 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S L+G +S   ++ + A     AIAITD     +  E  Q A   G++ ++
Sbjct: 340 VELHAHTTMSALDGVVSAAALVKRAAEWGHDAIAITDHGVCQAYPEAYQAAKKHGVRLVL 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
           G +  +     L +  +   P       V+  +   G 
Sbjct: 400 GVEAYVVDDGGLLVYRECDRPLDDETEYVVFDTETTGL 437


>gi|255975216|ref|ZP_05425802.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|255968088|gb|EET98710.1| DNA polymerase III [Enterococcus faecalis T2]
          Length = 1439

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 174/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 573  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 625

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 626  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 683

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 684  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 743

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 744  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDIAKRIVVENPNKVADLCEEV 800

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 801  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 843

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 844  EKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 902

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 903  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 962

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 963  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1006

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1007 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1048

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1049 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1102

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            +D   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1103 IDPKTIPTDDPEVMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1162

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1163 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1211

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1212 DSGMAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1263

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1264 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1323

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1324 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1383

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1384 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLPDENQLSLFDML 1439



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 328 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 387

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 388 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVET 421


>gi|302392350|ref|YP_003828170.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium
            arabaticum DSM 5501]
 gi|302204427|gb|ADL13105.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium
            arabaticum DSM 5501]
          Length = 1440

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 174/902 (19%), Positives = 327/902 (36%), Gaps = 165/902 (18%)

Query: 84   KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG 143
            +++++           V+LV   +G + L +LVS+ ++     +  RI  S L +   EG
Sbjct: 603  ELSSEIDYKRLRPYHAVILVKNQQGLKNLYKLVSKAHIET-FHRVPRILKSDLLK-RREG 660

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE 197
            LI+ +   +G + +A      +   + +  F      + L  ++  +  ++    ++ +E
Sbjct: 661  LIIGSACEAGQLYQAIVNGKDESTIREIAEFYDYLEIQPLGNNQFLIENEQVDSKEKLKE 720

Query: 198  --SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
               Q+ QL      P+VAT +  FL  ED    ++LM          +           +
Sbjct: 721  INHQIYQLGQKLNKPVVATGDVHFLDPEDKIYREILMEGQGFDDAEDQAPLYY------R 774

Query: 256  NRSEMVSIFSDL-PE-ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
               EM+  F    PE A E  ++  ++    ++   P+       E +   +E +    N
Sbjct: 775  TTEEMLDEFDYFEPEVAKEVVIDNPKQIVEEVEEVKPVPDGLFTPEIEGAVEEVKQMTYN 834

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            KA           +I      +    RL+ EL+ I    F+  +LI    ++ +  +   
Sbjct: 835  KAR----------SIYGDELPELVVNRLEKELDAIIGNGFAVIYLISHKLVKKSLDDGYL 884

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRF--------------------------------- 400
            VG  RGS   S+ A    IT+++PL                                   
Sbjct: 885  VG-SRGSVGSSLVATMCDITEVNPLPPHYVCPKCKYSEFFTDGSVGIGVDLPDEVCPECG 943

Query: 401  --------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
                     + FE F+  +   +PD D++F  + + EV RY ++ +G + V +  T  ++
Sbjct: 944  ADLIKSGSDIPFEVFMGFEGDKVPDIDLNFSGEYQPEVHRYTEDLFGEDHVYRAGTISTI 1003

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
              + A   V                            +   DD   R   L    V+RL+
Sbjct: 1004 ADRTAYGFV----------------------------KGYMDD---RSLTLRKAEVNRLV 1032

Query: 513  EISQKLEGLYRHASTHAAG--IVIGDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAG 567
            +      G  +    H  G  +V  D+ +    P+ R   D  SD+  T F+   I    
Sbjct: 1033 D---GCTGARKTTGQHPGGQMVVPQDKEVFDFTPIQRPANDQDSDVLTTHFDYHSI-SGR 1088

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            ++K D LG    T ++   D        VD + IP D+ ET  + +    LG+ + E  G
Sbjct: 1089 ILKLDILGHDDPTTIRMLQDLTG-----VDPTSIPLDNPETMAIFSKVEPLGVSKEEI-G 1142

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQ 686
                  G+       +  ++   RP     +V  +   +G +  ++    LI+    E  
Sbjct: 1143 TTVGSLGIPEFGTSFVRQMLEDTRPTTFAELVRISGLSHGTDVWLNNAQDLIEEGTAELS 1202

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
             VI  ++ +M    L  G   S+A  +            D +    ++   +  +     
Sbjct: 1203 EVISVRDDIMNY-LLQKGVEASKAFWIME----------DVRHGEGLTEEQEQTMRDNDV 1251

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK----- 801
             + +    K   Y F K+HA AY +++++ A+ K HYP  F     T++  + +      
Sbjct: 1252 PDWYIKSCKKIKYMFPKAHAVAYVMMAFRIAFFKVHYPEAFYNTYFTIKSADFDAQIVLQ 1311

Query: 802  ----IKKFCQDARQFNIQIMPPSVN-------------------------TPCVDFKVGD 832
                IK+  Q+ +           N                         +    F++ +
Sbjct: 1312 GKDFIKEKIQEIKAKGNDATQKDKNTLTVLEIVIEALVRGIEFVSVDLYDSEAEKFQITN 1371

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            N +   L  ++G+G + A  I++A  +  F S+ED  +R    K    V+E +   G LD
Sbjct: 1372 NGLRPPLITLQGLGKSAAESIIQAREEGEFSSIEDLKNRTSISKT---VIEVMKEHGCLD 1428

Query: 893  CF 894
              
Sbjct: 1429 GL 1430



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 2/116 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++  + L +++++ A  +  A+AITD   + S  E    A    ++ + 
Sbjct: 342 VELHLHTQMSAMDSVVELEDVIERAADWEHQALAITDHGVVQSFPEAYNIADDLDLKLVY 401

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA--EGYQRLIELVSRMYLLDQG 125
           G +  +       + N+          IV  + T     Y   I  +    + D  
Sbjct: 402 GLEAYLVDDGEPIVINEADVELEETEYIVFDLETTGFNPYHNEIIEIGAAKVKDGR 457


>gi|170754900|ref|YP_001781966.1| DNA polymerase III PolC [Clostridium botulinum B1 str. Okra]
 gi|169120112|gb|ACA43948.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum B1 str. Okra]
          Length = 1432

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 169/910 (18%), Positives = 314/910 (34%), Gaps = 183/910 (20%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
               +++L   A G + L +LVS+  L +   +  R+  S + E   EGLI+ +   +G I
Sbjct: 606  TYHLIILAKNAVGLKNLYKLVSKSNL-EYFFKRPRMAKSLINEY-KEGLIIGSACEAGQI 663

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVV 201
             +      ++   K ++ F        Y+ +Q     +              +    ++ 
Sbjct: 664  YKEILKGKTKEELKNMINFYD------YLEIQPLGNNEFLVKNGSVKDEKELQEINKKIC 717

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +L   +  P+VAT +  FL EE      +LM+    +           P  Y +   EM+
Sbjct: 718  ELGEFYNKPVVATCDVHFLDEEHEVFRRILMSGQGFSDADN------QPPLYFRTTEEML 771

Query: 262  SIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
              F  L E  A E  +    + + ++    PI       + +      E ++R   +   
Sbjct: 772  KEFEYLGEEKAKEVVIHNTNKIADMIDEIKPIPEETFPPKIEGA----EEDIRRMTIEKA 827

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                   AI      +   +RL  ELN I    ++  +LI    +  + ++   VG  RG
Sbjct: 828  H------AIYGDPLPEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SRG 880

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S  A    IT+++ L                                         
Sbjct: 881  SVGSSFAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIKD 940

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A 
Sbjct: 941  GHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTAY 1000

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V + L                                 +  +  +  ++RL   S+  
Sbjct: 1001 GFVKKYLDE-------------------------------KNIKANNAEIERL---SKGC 1026

Query: 519  EGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDF 573
             G+ R +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D 
Sbjct: 1027 TGVKRTSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSI-SGRLLKLDI 1085

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            LG    T+L+   D       +VD   +P  D +   L T+   LG+ + +         
Sbjct: 1086 LGHDDPTVLRMLQDL-----TQVDPKSVPLGDPKVISLFTSPKALGVTEEDID-CPVGTY 1139

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQ 692
            G+     + +  ++   +P     +V  +   +G +  ++     I       +  I  +
Sbjct: 1140 GLPEFGTKFVRQMLLDTKPKSFAELVRISGLSHGTDVWLNNAQYFIKEGYTTIKDCISTR 1199

Query: 693  EQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            + +M      +L    + +  + +R+   K + EE +              + +    + 
Sbjct: 1200 DDIMVYLLQKELPPKSAFTIMEKVRKG--KGLTEEQEAL------------MKEHDVPDW 1245

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------- 800
            +    K   Y F K HA AY +++ + A+ K +YP  + A   ++  D+ +         
Sbjct: 1246 YIESCKKIKYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADLIVKGEE 1305

Query: 801  KIKKFCQDARQFN------------------------IQIMPPSVNTP-CVDFKVGDNRI 835
            KIK+   +                             I+ +   +       F +  + I
Sbjct: 1306 KIKEKMNELYAMGNNITQKDKGLLTILEISYEMYKREIKFLKVDLYKSNATKFLIEGDSI 1365

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L+A++GVG   A+ I EA  +  F S ED   R    K     LE+    G L    
Sbjct: 1366 RPPLSALQGVGKNAAKSIEEARLEGEFISKEDLRLRTKVTKTVIETLEN---HGCLRGMQ 1422

Query: 896  YSRMQLLQSL 905
             +    L SL
Sbjct: 1423 ETNQISLFSL 1432



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++G   ++ ++ + A     A+AITD   + +  +    A    I+ I 
Sbjct: 333 VELHMHSQMSAMDGMTPVSELVKRAAKWGHKAVAITDHGVVQAYPDAMSAAKKGNIKVIY 392


>gi|226949776|ref|YP_002804867.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum A2 str. Kyoto]
 gi|226841257|gb|ACO83923.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum A2 str. Kyoto]
          Length = 1432

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 169/910 (18%), Positives = 314/910 (34%), Gaps = 183/910 (20%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
               +++L   A G + L +LVS+  L +   +  R+  S + E   EGLI+ +   +G I
Sbjct: 606  TYHLIILAKNAVGLKNLYKLVSKSNL-EYFFKRPRMAKSLINEY-KEGLIIGSACEAGQI 663

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVV 201
             +      ++   K ++ F        Y+ +Q     +                   ++ 
Sbjct: 664  YKEILKGKTKEELKNMIDFYD------YLEIQPLGNNEFLVRNGSVKDEKELEEINKKIC 717

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +L   +  P+VAT +  FL EE      +LM+    +           P  Y +   EM+
Sbjct: 718  ELGEFYNKPVVATCDVHFLDEEHEVFRRILMSGQGFSDADN------QPPLYFRTTEEML 771

Query: 262  SIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
              F  L E  A E  +    + + ++    PI       + +      E ++R   +   
Sbjct: 772  KEFEYLGEEKAKEVVIYNTNKIADMIDEIKPIPEETFPPKIEGA----EEDIRRMTIEKA 827

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                   AI      +   +RL  ELN I    ++  +LI    +  + ++   VG  RG
Sbjct: 828  H------AIYGDPLPEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SRG 880

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S  A    IT+++ L                                         
Sbjct: 881  SVGSSFAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIKD 940

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A 
Sbjct: 941  GHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTAY 1000

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V + L                                 +  +  +  ++RL   S+  
Sbjct: 1001 GFVKKYLDE-------------------------------KNIKANNAEIERL---SKGC 1026

Query: 519  EGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDF 573
             G+ R +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D 
Sbjct: 1027 TGVKRTSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSI-SGRLLKLDI 1085

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            LG    T+L+   D       +VD   +P  D +   L T+   LG+ + +         
Sbjct: 1086 LGHDDPTVLRMLQDL-----TQVDPKSVPLGDPKVISLFTSPKALGVTEEDID-CPVGTY 1139

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQ 692
            G+     + +  ++   +P     +V  +   +G +  ++     I       +  I  +
Sbjct: 1140 GLPEFGTKFVRQMLLDTKPKSFAELVRISGLSHGTDVWLNNAQYFIKEGYTTIKDCISTR 1199

Query: 693  EQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            + +M      +L    + +  + +R+   K + EE +              + +    + 
Sbjct: 1200 DDIMVYLLQKELPPKSAFTIMEKVRKG--KGLTEEQEAL------------MKEHDVPDW 1245

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------- 800
            +    K   Y F K HA AY +++ + A+ K +YP  + A   ++  D+ +         
Sbjct: 1246 YIESCKKIKYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADLIVKGEE 1305

Query: 801  KIKKFCQ------------------------DARQFNIQIMPPSVNTP-CVDFKVGDNRI 835
            KIK+                           +  +  I+ +   +       F +  + I
Sbjct: 1306 KIKEKMNELYAMGNNITQKDKGLLTILEISYEMYKRGIKFLKVDLYKSNATKFLIEGDSI 1365

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L+A++GVG   A+ I EA  +  F S ED   R    K     LE+    G L    
Sbjct: 1366 RPPLSALQGVGKNAAKSIEEARLEGEFISKEDLRLRTKVTKTVIETLEN---HGCLRGMQ 1422

Query: 896  YSRMQLLQSL 905
             +    L SL
Sbjct: 1423 ETNQISLFSL 1432



 Score = 80.8 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++G   ++ ++ + A     A+AITD   + +  +    A  + I+ I 
Sbjct: 333 VELHMHSQMSAMDGMTPVSELVKRAAKWGHKAVAITDHGVVQAYPDAMSAAKKSNIKVIY 392


>gi|325571082|ref|ZP_08146654.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
 gi|325156167|gb|EGC68353.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
          Length = 1449

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/952 (18%), Positives = 333/952 (34%), Gaps = 188/952 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            L  D+  ++   N  K   P      +L  T  G + L +L+S
Sbjct: 582  FVKEAMEK-----HDMLLHEDLNRHVGGENSYKAARP--FHATILARTQAGLKNLFKLIS 634

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               +     +  RI  S L ++  EGL++ T    G +  A        A +    +   
Sbjct: 635  MSNVKYFHDKVPRIPRSELVKL-REGLLVGTACDKGEVFVAMMQKGVDAARELAKFYDYI 693

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   L   L +           ++Q+       +VAT N+ +L+EED     V
Sbjct: 694  EVMPKAVYAHLLETELVKSEKDLEDIIRNLIQMGEELGKIVVATGNAHYLNEEDAIYRKV 753

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL-PE-ALENTVEIARRCSFILQVH 288
            L+        +        PD + +   EM++ F  L PE A E  V    + + + +  
Sbjct: 754  LINSMGG---ANPLNRHSLPDVHFRTTDEMLTAFQFLGPEVAKEIVVTNPNKIADLCEKV 810

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             P+       +    ++E  +   N+A            +      +   +RL  EL+ I
Sbjct: 811  IPVKDDLYTPKIPGSEQEITDLSYNRAKE----------LYGDPLPEIVEKRLKKELDSI 860

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------- 398
                FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL          
Sbjct: 861  IGNGFSVIYLISQKLVHKSNQDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPDCQ 919

Query: 399  -------------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 920  YSEFYEDGSYGSGYDMPEKKCPKCGTRLNKDGHDIPFETFLGFHGDKVPDIDLNFSGEYQ 979

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E   Y +  +G E V +  T G++  K A   V +  +  ++   R             
Sbjct: 980  PEAHNYTKVLFGEEYVYRAGTIGTVADKTAFGFV-KGFERDHNLHYRAA----------- 1027

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPM 545
                                VDRL   ++   G+ R    H  GI++      +    P+
Sbjct: 1028 -------------------EVDRL---AKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPI 1065

Query: 546  Y---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                 D  S+   T F+   I    ++K D LG    T+++   D        +D   IP
Sbjct: 1066 QYPADDQNSEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG-----IDPKTIP 1119

Query: 603  FDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             DD E   +               +  GTLGI +  +  +R  L+   P    +++ +  
Sbjct: 1120 TDDPEVMRIFGGTDVLGVTEEQIYSKTGTLGIPEFGTRFVRGMLDQTHPSTFAELLQISG 1179

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            L     +          N +E I      +  ++     +++Y    +  A L  G +  
Sbjct: 1180 LSHGTDVWLG-------NAEELIRRGDASLAEVIGCRDDIMVY----LIHAGLDDGMAFK 1228

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
              + +R+    KI +++   ++ ++    +N + +    +  ++      Y F K+HAAA
Sbjct: 1229 IMETVRKGQWNKIPDDL---RDTYLQAMRENNVPEWYIDSCSKI-----KYMFPKAHAAA 1280

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------------- 803
            Y +++ + A+ K ++P+ +  A  ++  D+ + I                          
Sbjct: 1281 YVLMALRVAYFKVYFPILYYCAYFSVRADDFDLIAMSKGKDAVKERMQEITDKGLDASTK 1340

Query: 804  --------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIM 854
                    +   +  +   +     +     + F +   ++     A+  +G   A+ I+
Sbjct: 1341 EKNLLTVLELANEMLERGYEFGMIDLYKSDAENFVIDGKKLIAPFRAVPSLGLNVAKQIV 1400

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
            EA  + PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1401 EARKNGPFLSKEDLANR---GKVSKTLIEYMTDNGVLKDLPDENQLSLFDML 1449



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++   ++ + + +       AIAITD        +       AG++ + 
Sbjct: 337 VELHLHSNMSTMDATNNVADFVAQAGKWGHKAIAITDHGGAQGFPDAHHAGEKAGVKILY 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N    P      IV  V T
Sbjct: 397 GVEANIVDDGVAVAYNPKPVPLTDATYIVFDVET 430


>gi|307285835|ref|ZP_07565969.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
 gi|306502596|gb|EFM71863.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
          Length = 1451

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 174/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 585  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 755

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 756  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDIAKRIVVENPNKVADLCEEV 812

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 813  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 855

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 856  EKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 914

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 915  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 974

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 975  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1018

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1019 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1060

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1061 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1114

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            +D   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1115 IDPKTIPTDDPEVMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1174

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1175 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1223

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1224 DSGMAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1275

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1276 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1335

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1336 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1395

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1396 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLPDENQLSLFDML 1451



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVET 433


>gi|323705405|ref|ZP_08116980.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
            xylanolyticum LX-11]
 gi|323535307|gb|EGB25083.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
            xylanolyticum LX-11]
          Length = 1410

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 174/947 (18%), Positives = 317/947 (33%), Gaps = 199/947 (21%)

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
             K    GI+ +              + N+          +++LV   +G + L ELVS+ 
Sbjct: 559  NKLKENGIEKVNEINDY--------LKNKVDIKKMPTYHVIILVKNQKGLRNLYELVSKS 610

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF----- 174
             L +   ++ RI  S L ++  EGL++ +    G + R    N      + ++++     
Sbjct: 611  NL-EYFHRNPRIPKSLLSQM-REGLLIGSACEQGEVFRGLISNLDDDKLQEIVSYYDYLE 668

Query: 175  -KKLFGDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             + L  +   ++    +  +       ++  L    + P+VAT +  FL   D     +L
Sbjct: 669  VQPLGNNEFLIDKGEVKNKEELIKINKRIYDLGKQFKKPVVATCDVHFLDPWDNVYRKIL 728

Query: 232  MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHA 289
            M   +       DR    P  Y +   EM+  F       A E  ++     +  ++   
Sbjct: 729  M---YGKGFKDADR---QPPLYFRTTDEMMREFDYFDREIAKEIVIDNPNEIADSIEDVK 782

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
            PI         +      E ELR   +        +             +RLD ELN I 
Sbjct: 783  PIPDGTFPPSIEGA----EEELRKLTLNKAHEIYGEKL------PDIVEKRLDKELNSII 832

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------- 399
               ++  ++I    +  +  +   VG  RGS   S  A    IT+++PL           
Sbjct: 833  NNGYAVMYIIAQKLVTKSLNDGYLVG-SRGSVGSSFVATMSGITEVNPLPPHYICPHCKH 891

Query: 400  -------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                                             + FE FL  +    PD D++F  D + 
Sbjct: 892  SEFILDGSYGSGVDMPDKNCPQCGTKMKKDGHDIPFEVFLGFEGDKEPDIDLNFSGDYQP 951

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
               +Y +  +G   V +  T G+L  K A   V +                         
Sbjct: 952  IAHKYTEEIFGTGHVFRAGTIGTLADKTAYGFVKKYF----------------------- 988

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG--DRPLSQLVPMY 546
                      +   + +  + RL+       G  R    H  G+++   D+ +    P+ 
Sbjct: 989  --------EEKNLTVHNAEIKRLV---MGCTGAKRTTGQHPGGVMVVPKDKDIYDFTPIQ 1037

Query: 547  RDV---RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
                   SD+  T F+   I    L+K D LG    T+++   D             IP 
Sbjct: 1038 HPADAQDSDIITTHFDYHSI-SGRLLKLDILGHDDPTVIRMLEDLTGINAR-----EIPL 1091

Query: 604  DDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            DD +T  L                T GTLG+ +  +  +RQ L   +P    +++ +  L
Sbjct: 1092 DDKKTMSLFTSVEALNINPEDINCTVGTLGLPEFGTKFVRQMLVDTKPTTFAELVRISGL 1151

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
                   ++ + N +            +I       + VI  ++ +M        + +S+
Sbjct: 1152 SHGT---DVWLNNAQ-----------DIIKEGKATLKEVISTRDDIML-------FLISK 1190

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
               L + +  KI E + K K        +         + F    +   Y F K+HA AY
Sbjct: 1191 G--LDKKLSFKIMESVRKGKGIKEEEIEEMKK--HNVPDWFIQSCQKIKYMFPKAHAVAY 1246

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNV--------EKIKKFCQ-------------- 807
             +++++ A+ K H+P  F A   T+  D          EKIK+  +              
Sbjct: 1247 VIMAFRIAYFKVHHPEAFYATYFTVRADEFNLDMMDSLEKIKENIRLIESKSNNATAKEK 1306

Query: 808  ----------DARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +     ++        +  V F +  + I   L +++G+G   A+ I E 
Sbjct: 1307 SLLTILEVGLEMYLRGLKFTNIDLYKSDAVKFLITKDGILPPLNSLEGIGKQAAKIIAEE 1366

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLL 902
                 F S+ED  +R    K    +L+     G L D    +++ L 
Sbjct: 1367 REKGKFLSIEDLRNRTRISKTVIDILK---QHGCLQDIPESNQLSLF 1410



 Score = 85.0 bits (209), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH+  S ++G  S  +++ + +     AIAITD   L +  E    A   GI+ I 
Sbjct: 314 VELHVHTQMSSMDGVSSAESLIKRASEWGHKAIAITDHAVLQAYPEAQSAAKKYGIKVIY 373


>gi|16800425|ref|NP_470693.1| DNA polymerase III PolC [Listeria innocua Clip11262]
 gi|21263558|sp|Q92C34|DPO3_LISIN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|16413830|emb|CAC96588.1| polC [Listeria innocua Clip11262]
 gi|313619136|gb|EFR90925.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            innocua FSL S4-378]
          Length = 1444

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 172/937 (18%), Positives = 307/937 (32%), Gaps = 197/937 (21%)

Query: 68   QPIIGCQLDIDMQDNLKMTN----QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            + I   +   D++ +  + +                 +   T  G + L +L++   + +
Sbjct: 586  KLIKDAKEMHDIEFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLITMSNI-N 644

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KK 176
               +  RI  S L+++  EGLI+ T  S G +  A      Q AEK    +       K 
Sbjct: 645  YFYRVPRIPRSQLKKM-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKP 703

Query: 177  LFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            ++   +   L R           +V++      P+VAT N  +    D     +L+    
Sbjct: 704  VYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILIHSQG 763

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPR 294
                +        PD + ++  EM+  F+ L E  A E  V  +      +    PI   
Sbjct: 764  G---ANPLNRAELPDVHFRSTDEMLKEFAFLGEEKAKEIVVTNSNLVVDWMDDLKPIKDE 820

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                + D      E+E+RN +         +         +    RL+ EL  I    F+
Sbjct: 821  LYTPKIDGA----EDEVRNMSYGMAHQLYGEKL------PEIVEARLEKELKSIIGHGFA 870

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL----------- 403
              +LI    ++ +  +   VG  RGS   S  A    IT+++PL    L           
Sbjct: 871  VIYLISHKLVKKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFD 929

Query: 404  ------------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
                                          FE FL      +PD D++F  D +     Y
Sbjct: 930  DGSVGSGFDLPDKDCPHCGTPYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAY 989

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
             +  +G + V +  T G++  K A   V R  +   +   R                   
Sbjct: 990  TKEIFGEDYVFRAGTIGTVAEKTAFGYV-RNYERDMNMTIRGA----------------- 1031

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RD 548
                          VDRL+       G+ R    H  GI++      +    P+      
Sbjct: 1032 -------------EVDRLVA---GCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADA 1075

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
              S+   T F+   I    ++K D LG    T ++   D        +D   IP DD + 
Sbjct: 1076 TDSEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDLSG-----IDPKTIPTDDPDV 1129

Query: 609  YHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              L               +  GTLGI +  +  +RQ LE  +P    +++ +  L     
Sbjct: 1130 MKLFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHGTD 1189

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEAD 711
            +                 +   LI     E   VI  ++ +M       L S  +    +
Sbjct: 1190 VWLG--------------NAEELIKNKTCELPDVIGCRDDIMVFLIYQGLESSLAFKIME 1235

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +R+   K + EEM++             +        +    K   Y F K+HAAAY +
Sbjct: 1236 SVRKG--KGLTEEMEEA------------MIANKVPLWYIESCKKIKYMFPKAHAAAYVL 1281

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------------------- 800
            ++ + A+ K H+P+ F A   T+  D+ +                               
Sbjct: 1282 MAVRIAYFKVHHPLYFYATYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKN 1341

Query: 801  --KIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
               + +   +               +   +F +  + +     AI  +GT  A+ I+ A 
Sbjct: 1342 LLTVLEIANEMLARGFHFQKVDLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAAR 1401

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             +  F S ED   R    K+++ +++ +   G L+  
Sbjct: 1402 ENGEFLSKEDLQQR---GKVSKTIIQYMDDQGCLEGL 1435



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401


>gi|170761721|ref|YP_001787734.1| DNA polymerase III PolC [Clostridium botulinum A3 str. Loch Maree]
 gi|169408710|gb|ACA57121.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum A3 str. Loch Maree]
          Length = 1432

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 169/909 (18%), Positives = 310/909 (34%), Gaps = 181/909 (19%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
               +++L   A G + L +LVS+  L +   +  R+  S + E   EGLI+ +   +G I
Sbjct: 606  TYHLIILAKNAVGLKNLYKLVSKSNL-EYFFKRPRMAKSLINEY-KEGLIIGSACEAGQI 663

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVV 201
             +      ++   K ++ F        Y+ +Q     +                   ++ 
Sbjct: 664  YKEILKGKTKEELKNMIDFYD------YLEIQPLGNNEFLVRNGSVKDEKELEEINKKIC 717

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +L   +  P+VAT +  FL EE      +LM+    +           P  Y +   EM+
Sbjct: 718  ELGEFYNKPVVATCDVHFLDEEHEVFRRILMSGQGFSDADN------QPPLYFRTTEEML 771

Query: 262  SIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
              F  L E  A E  +    + + ++    PI       + +  +++       KA A  
Sbjct: 772  KEFEYLGEEKAKEVVIYNTNKIADMIDEIKPIPDETFPPKIEGAEEDIRRMTTEKAHA-- 829

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                    I      +   +RL  ELN I    ++  +LI    +  + ++   VG  RG
Sbjct: 830  --------IYGDPLPEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SRG 880

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S  A    IT+++ L                                         
Sbjct: 881  SVGSSFAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLKDKDCPKCGTKLIKD 940

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A 
Sbjct: 941  GHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTAY 1000

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V + L                                 +  +  +  ++RL   S+  
Sbjct: 1001 GFVKKYLDE-------------------------------KNIKANNAEIERL---SKGC 1026

Query: 519  EGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDF 573
             G+ R +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D 
Sbjct: 1027 TGVKRTSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSI-SGRLLKLDI 1085

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            LG    T+L+   D       +VD   +P  D +   L T+   LG+ + +         
Sbjct: 1086 LGHDDPTILRMLQDL-----TQVDPKSVPLGDPKVISLFTSPKALGVTEEDID-CPVGTY 1139

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQ 692
            G+     + +  ++   +P     +   +   +G +  ++     I       +  I  +
Sbjct: 1140 GLPEFGTKFVRQMLLDTKPKSFAELARISGLSHGTDVWLNNAQYFIKEGYTTIKDCISTR 1199

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKI--KEEMDKQKERFISGASKNGISKTIAVNIF 750
            + +M +  L  G     A  +   + K     EE +              + +    + +
Sbjct: 1200 DDIM-VYLLQKGLPPKSAFTIMEKVRKGKGLTEEQEAL------------MKEHDVPDWY 1246

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------K 801
                K   Y F K HA AY +++ + A+ K +YP  + A   ++  D+ +         K
Sbjct: 1247 IESCKKIKYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADLIVKGEEK 1306

Query: 802  IKKFCQ------------------------DARQFNIQIMPPSVNTP-CVDFKVGDNRIY 836
            IK+                           +  +  I+ +   +       F +  + I 
Sbjct: 1307 IKEKMNELYAMGNNITQKDKGLLTILEISYEMYKRGIKFLKVDLYKSNATKFLIEGDSIR 1366

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L+A++GVG   A+ I EA  +  F S ED   R    K     LE+    G L     
Sbjct: 1367 PPLSALQGVGKNAAKSIEEARLEGEFISKEDLRLRTKVTKTVIETLEN---HGCLRGMQE 1423

Query: 897  SRMQLLQSL 905
            +    L SL
Sbjct: 1424 TNQISLFSL 1432



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++G   ++ ++ + A     A+AITD   + +  +    A    I+ I 
Sbjct: 333 VELHMHSQMSAMDGMTPVSELVKRAAKWGHKAVAITDHGVVQAYPDAMSAAKKGNIKVIY 392


>gi|116333947|ref|YP_795474.1| DNA polymerase III PolC [Lactobacillus brevis ATCC 367]
 gi|122269369|sp|Q03QS9|DPO3_LACBA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116099294|gb|ABJ64443.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus brevis
            ATCC 367]
          Length = 1445

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 176/934 (18%), Positives = 315/934 (33%), Gaps = 188/934 (20%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
                Q N  MT+            +LL  T  G + + +LVS   + D   +  R+  S 
Sbjct: 595  QYHDQLNDHMTDNDAYKHARPNHAILLAKTQAGLKNMFKLVSASNV-DYYYRVPRVPRSV 653

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-------FGDRLYVNLQR 188
            L+E   EG+I+ +  SSG +  A        A  +   +  L       +   +   L  
Sbjct: 654  LEEY-REGIIVGSACSSGEVFTAMMQKGQVEAAAKAKFYDYLEVQPSAAYQPLIDSGLIA 712

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             R         +V+L +    P+VAT +  FL+ +DY    +L+        +     + 
Sbjct: 713  DRENMEEIVRNMVKLGHDLNKPVVATGDVHFLNPDDYIYRKILIHSQGG---ANPLNRQE 769

Query: 249  TPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             PD +     EM++ F+ L E  A E  V   ++ +  +    P+  +      +     
Sbjct: 770  LPDVHFMTTDEMLTDFAYLGEETAKEIVVTNTQKIADDIDEVHPLKDKLYTPRMEGA--- 826

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+E+R + +                  +  + R+D EL  I    FS  +LI    +  
Sbjct: 827  -EDEIRQRTMDTAHAMYGD------PLPELVQHRVDRELKSIIGNGFSVIYLIAQRLVAK 879

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            + K+   VG  RGS   S+ A    IT+++PL                            
Sbjct: 880  SNKDGYLVG-SRGSVGSSLVATLTGITEVNPLPPHYRCPKCQYSHFYTKGEYSSGYDLPE 938

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                           ++ FE FL      +PD D++F  D +     Y +  +G + V +
Sbjct: 939  KDCPECGTLMIGDGHNIPFETFLGFKGNKVPDIDLNFSGDYQPIAHNYTKVLFGEKNVYR 998

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V +A +    Q                          FR A    
Sbjct: 999  AGTIGTVADKTAYGYV-KAYERDTEQT-------------------------FRGA---- 1028

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRSD---LPVTQFNM 560
              +DRL   ++   G+ R    H AGI++      +    P+             T F+ 
Sbjct: 1029 -EIDRL---AKGATGVKRTTGQHPAGIIVVPDYMDIFDFTPIQYPADDQSAAWQTTHFDF 1084

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT------- 613
              I    ++K D LG    T+++   D        VD + IP DD     L +       
Sbjct: 1085 HSIHD-NILKIDILGHDDPTMIRTLQDL-----SGVDPTTIPMDDPGVMGLFSGTDSLGV 1138

Query: 614  -------TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
                     GTLG+ +  +  +R  LE   P     ++ +  L     +         KN
Sbjct: 1139 TPEQIQSKTGTLGVPEFGTRFVRGMLEETHPQNYSQLLQISGLSHGTDVWLGNAEELIKN 1198

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G   I ++    D ++ +     +  E            S    + +R+           
Sbjct: 1199 GTATIANVIGCRDNIMTDLINFGLDSET-----------SFQVMEHVRKG---------- 1237

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
                R I    +  +  T   + +        Y F ++HAAAY +++ + A+ K ++P+ 
Sbjct: 1238 ----RGIPDEWQEKMKATDCPDWYIDSCLKIKYMFPRAHAAAYVLMALRVAYFKVYFPII 1293

Query: 787  FLAASMTLEMDNVEKIK---------------------------------KFCQDARQFN 813
            + AA  ++  D+ + +                                  +   +  +  
Sbjct: 1294 YYAAYFSVRADDFDVVAMSQGKTAVKAAMKAINDQGMDASAKDKNLLTVLELANEMLERG 1353

Query: 814  IQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             +     +      D+ +  + +     A  G+G   A+ I+ A  D+PF S ED   R 
Sbjct: 1354 FKFKMIDLEKSDAADWIIDGDTLIAPFKAAPGLGLNVAKQIVAARNDRPFISKEDLAKRG 1413

Query: 873  DSKKLNRRVL-ESLVFAGALDCFGYSRMQLLQSL 905
               K     + E+ V AG  D    +++ L   L
Sbjct: 1414 KVSKTLIDFMTENGVLAGLPDE---NQLSLFDDL 1444



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+S S ++   S+ + + +      PA+AITD  ++         A  AGI+ + 
Sbjct: 339 VELHLHTSMSQMDATNSIGDYVKQAKKWGMPALAITDHADVQGFPAAFNSAAKAGIKMLY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N    P      +V  V T
Sbjct: 399 GVEANLVDDGVPIGYNSAHVPLDGATYVVFDVET 432


>gi|227510250|ref|ZP_03940299.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis ATCC
            27305]
 gi|227189902|gb|EEI69969.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis ATCC
            27305]
          Length = 1438

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 166/921 (18%), Positives = 309/921 (33%), Gaps = 185/921 (20%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
               + N  MT             V++     G + + ++VS   + D   +  R+  + L
Sbjct: 590  YHDELNDHMTENDAYKHARPSHAVIIAKNQVGLKNMFKIVSLSNV-DYFFRVPRVPRTQL 648

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNL-QRHRGYD 193
            ++   EG+I+ +  SSG +  A        A K+   +   ++   R Y  L + H   D
Sbjct: 649  EKF-REGIIVGSACSSGEVFTAMMQKGMDEARKKAGFYDYLEVQPKRAYAPLIESHLISD 707

Query: 194  RYRESQV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                 ++    V+L    + P+VAT +  +L+ +DY    +L+        +     +  
Sbjct: 708  EANLEEILTNIVKLGDELKKPVVATGDVHYLNPQDYIYRKILINSQGG---ANPLNRQEL 764

Query: 250  PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            PD +    +EM+  F+ L   +A E  V    R +  +    P+  R    + +      
Sbjct: 765  PDLHFLTTNEMLDDFAFLGAEKAKEIVVTNTNRIADDIDDVHPLKDRLYTPKMEG----S 820

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+E++ + +           + K         RL  EL  I    FS  +LI    +  +
Sbjct: 821  EDEIKERTMTTAHQ-WYGDPLPK-----IVDDRLTTELKSIIGNGFSVIYLIAQRLVAKS 874

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
             K+   VG  RGS   S+ A    IT+++PL                             
Sbjct: 875  NKDGYLVG-SRGSVGSSLVATLTGITEVNPLPPHYRCPNCQHTEFFTKGEYSSGYDLPRK 933

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                          ++ FE FL      +PD D++F  D +     Y +  +G + V + 
Sbjct: 934  KCPECGTQMIGDGHNIPFETFLGFTGNKVPDIDLNFSGDYQPIAHNYTKVLFGEKNVFRA 993

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V +A +       R               QA  D            
Sbjct: 994  GTIGTVADKTAYGYV-KAYERDKGTTYR---------------QAEED------------ 1025

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRSD---LPVTQFNMK 561
                   +++   G+ R    H AGI++   D  +    P+             T F+  
Sbjct: 1026 ------RLAKGATGVKRTTGQHPAGIIVVPADMDIYDFTPIQYPADDQTAAWKTTHFDFH 1079

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT-------- 613
             I    ++K D LG    T+++   D        ++   IP DD     + +        
Sbjct: 1080 SIHD-NILKIDILGHDDPTMIRMLQDL-----SGINPKSIPMDDPGVMSIFSSPKILGVS 1133

Query: 614  ------TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
                    GTLG+ +  +  +R  LE   P    +++ +  L     +         KNG
Sbjct: 1134 EEQIQSKTGTLGVPEFGTRFVRGMLEQTHPSNYSELLQISGLSHGTDVWLGNADELIKNG 1193

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
               I ++    D ++ +     +  E           + + E+    R +    +EEM  
Sbjct: 1194 TATIANVIGCRDNIMTDLIQWGLDSEL---------SFQIMESVRHGRGIPDDWQEEM-- 1242

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
                           K      +        Y F ++HAAAY +++ + A+ K ++P+ +
Sbjct: 1243 --------------RKAKIPEWYIDSCLKIKYMFPRAHAAAYILMALRIAYFKVYFPLIY 1288

Query: 788  LAASMTLEMDNVEKIK---------------------------------KFCQDARQFNI 814
             AA  ++  D+ + +                                  +   +  +   
Sbjct: 1289 YAAYFSVRADDFDIVSMCRGKDAVKNAMKQINDKGMEASTKEKNLLTVLELANEMLERGY 1348

Query: 815  QIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                  +     + + +  N +     ++ G+G   A+ I+ A  DKPF S ED   R  
Sbjct: 1349 VFKMVDLKKSAANQWLIDGNNLIAPFNSVPGLGLNVAKQIVAAREDKPFISKEDLSKRGK 1408

Query: 874  SKKLNRRVL-ESLVFAGALDC 893
              K     + E+ V  G  D 
Sbjct: 1409 VSKTLIDFMTENHVLDGLPDE 1429



 Score = 69.6 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+S S ++   ++ +   +  A   PA+AITD   +    +         ++ + 
Sbjct: 333 VELHLHTSMSQMDATNNIADYAKQAKAWGHPALAITDHAAVQGFPDAFHAGQKNDLKMLY 392

Query: 72  GC 73
           G 
Sbjct: 393 GV 394


>gi|256961318|ref|ZP_05565489.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|256951814|gb|EEU68446.1| DNA polymerase III [Enterococcus faecalis Merz96]
          Length = 1439

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 573  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 625

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 626  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 683

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 684  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 743

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 744  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEV 800

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 801  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 843

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 844  EKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 902

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 903  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 962

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 963  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1006

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1007 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1048

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1049 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1102

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1103 IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1162

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1163 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1211

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1212 DSGMAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1263

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1264 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1323

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1324 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1383

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1384 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLPDENQLSLFDML 1439



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 328 VELHMHSNMSTMDATNKVGDLVVQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 387

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 388 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVET 421


>gi|256956660|ref|ZP_05560831.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|256947156|gb|EEU63788.1| DNA polymerase III [Enterococcus faecalis DS5]
          Length = 1439

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 573  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 625

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 626  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 683

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 684  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 743

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 744  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEV 800

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 801  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 843

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 844  EKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 902

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 903  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 962

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 963  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1006

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1007 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1048

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1049 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1102

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1103 IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1162

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1163 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1211

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1212 DSGMAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1263

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1264 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1323

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1324 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1383

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1384 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLPDENQLSLFDML 1439



 Score = 74.6 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 328 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 387

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 388 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVET 421


>gi|256763072|ref|ZP_05503652.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256963554|ref|ZP_05567725.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|256684323|gb|EEU24018.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256954050|gb|EEU70682.1| DNA polymerase III [Enterococcus faecalis HIP11704]
          Length = 1439

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 573  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 625

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 626  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 683

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 684  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 743

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 744  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEV 800

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 801  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 843

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 844  EKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 902

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 903  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 962

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 963  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1006

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1007 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1048

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1049 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1102

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1103 IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1162

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1163 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1211

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1212 DSGMAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1263

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1264 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1323

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1324 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1383

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1384 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLPDENQLSLFDML 1439



 Score = 74.6 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 328 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 387

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 388 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVET 421


>gi|260583917|ref|ZP_05851665.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
            700633]
 gi|260158543|gb|EEW93611.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
            700633]
          Length = 1441

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/941 (18%), Positives = 331/941 (35%), Gaps = 204/941 (21%)

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            + A   G+        ++  ++  K                +      G + L ++VS  
Sbjct: 588  EAANDHGLIYHDQLNTNLHPEEVFK--------NGRPFHATIFAKHQAGLKELFKVVSAS 639

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KL 177
             +     +  RI  S L E     LI  +G S G +  A      + A+++   +   ++
Sbjct: 640  NV-QYFYRVPRILRSMLIENRDSFLI-GSGCSEGEVFEAMMQKGYEEAKEKAKFYDYIEI 697

Query: 178  FGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
                +Y       L R+  +       +V+L    ++P+VAT N  +L+ ED    ++L+
Sbjct: 698  MPKAVYRPLIDKELIRNEHHLEEIIKNLVKLGEELDIPVVATGNVHYLNPEDKIYREILL 757

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAP 290
               ++       +    PD + +  +EM+  F+ L E  A E  V      +  L+V  P
Sbjct: 758  TSVNN------GQKLNYPDVHFRTTNEMLDEFAFLGEEKAFEVVVTNTHWVNDQLEVIIP 811

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            I       + +  + E      +KA       L           +   +R+D EL  I  
Sbjct: 812  IKDDLYTPKIEGAEDEITKLSYDKAHEWYGEEL----------PEIVEKRIDKELKSIIG 861

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------ 398
              FS  +LI    +  + ++   VG  RGS   S+ A    IT+++PL            
Sbjct: 862  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSLVATLTGITEVNPLAPHYRCPNCCYS 920

Query: 399  -----------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  + + +
Sbjct: 921  EFFDDGSVGSGFDLPEKDCPKCGTRLAKDGHDIPFETFLGFYGDKVPDIDLNFSGEYQPQ 980

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G + V +  T G++  K A   V +  +                       
Sbjct: 981  AHNYTKVLFGEDYVYRAGTIGTVADKTAFGYV-KGYERDLGL------------------ 1021

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY- 546
                    FR+A      +DRL   ++   G+ R    H  GI++      +    P+  
Sbjct: 1022 -------EFRQA-----EIDRL---AKGCTGVKRSTGQHPGGIIVIPDYMDVYDFTPIQF 1066

Query: 547  --RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
               D  ++   T F+   I    ++K D LG    T+++   D        ++   IP D
Sbjct: 1067 PADDQNAEWKTTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDL-----SGIEPKDIPPD 1120

Query: 605  DHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            D E   +               +  GTLGI +  +  +R  LE  +P    +++ +  L 
Sbjct: 1121 DPEVMKIFGGTEVLGVTPEQIDSNTGTLGIPEFGTKFVRGMLEQTKPTTFTELLQISGLS 1180

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSL 707
                     VY       E+++ +H +          VI  ++ +M       + +G + 
Sbjct: 1181 HGT-----DVYLG---NAEELIRLHGI------PLSEVIGCRDDIMVYLIHKGVENGAAF 1226

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
               + +R+   K I E+             +N + +    +  ++      Y F K+HAA
Sbjct: 1227 KIMEGVRKG--KGIPEDYQAM-------MRENNVPEWYIESCLKI-----KYMFPKAHAA 1272

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMP 818
            AY +++ + AW K H P+ +  A  ++   + +          IK+  ++ R        
Sbjct: 1273 AYVLMALRVAWFKVHKPLLYYCAYFSVRAQDFDIVAMSQGKEMIKQRMKEIRDKGNDAST 1332

Query: 819  PSVN-------------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
              VN                         +  V+F +  + +     +I G+G   A  I
Sbjct: 1333 KEVNLLTVLELANEMCERGFNFKMVDIEKSDAVNFVIEGDSLIAPFRSIPGLGLNVANKI 1392

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +EA  ++PF S +D  +R    K+++ +++ +     LD  
Sbjct: 1393 VEARQEQPFISKKDLATR---GKVSKTLIDYMTENKVLDDL 1430



 Score = 78.5 bits (192), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 90/567 (15%), Positives = 183/567 (32%), Gaps = 80/567 (14%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L +H++ S+++   S ++++ + A    PA+AITD  NL S  E         I+ + 
Sbjct: 340 IELHLHTNMSVMDATNSASDLVKQAAKWGHPAVAITDHANLQSYPEAHGAGKGNNIKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G + +I         N           +V  V T  G   + + +  +  +   K +V  
Sbjct: 400 GLEGNIVDDQVNVAYNPQHILLEDATYVVFDVET-TGLSAIYDSIIELAAVKMHKGNVID 458

Query: 132 CLSWLQEIGTEG---LIMLTGGSSGPIDRAFFFNSSQVAEKRLLT------------FKK 176
                 + G       I LTG +   +      + +QV ++                F  
Sbjct: 459 KFEEFIDPGHPLSATTIQLTGITDDMV--RGSKSQAQVLKEFAAFTKDTILVAHNASFDM 516

Query: 177 LFGDRLY----VNLQRHRGYDRYRESQVVQ----------LAYTHELPLVATNNSLFLSE 222
            F +  Y    +        D    S+++           LA  + + L   + ++F SE
Sbjct: 517 GFLNTGYEKEGLEKTTQPVIDTLELSRLLHPHLKSHRLNTLAKRYNVALEQHHRAVFDSE 576

Query: 223 EDYEAHDVLMAVA---HSTVVSQKDRPRVTPDHYLKNRSEM-VSIFSDLPEALENTVEIA 278
                  + +  A   H  +   +    + P+   KN      +IF+     L+   ++ 
Sbjct: 577 TTGHLCHIFLKEAANDHGLIYHDQLNTNLHPEEVFKNGRPFHATIFAKHQAGLKELFKVV 636

Query: 279 RRCSFILQVHAPILPRFIEKECDD--------IQKEEENELRNKAVAGLEVRLAQGAIAK 330
              +       P + R +  E  D         + E    +  K     + +       +
Sbjct: 637 SASNVQYFYRVPRILRSMLIENRDSFLIGSGCSEGEVFEAMMQKGYEEAKEKAKFYDYIE 696

Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                 YR  +D EL  I          I+ + ++  ++ +IPV       A     Y  
Sbjct: 697 IMPKAVYRPLIDKEL--IRNEH--HLEEIIKNLVKLGEELDIPV------VATGNVHYL- 745

Query: 391 TITDIDP---LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ-I 446
                +P   +   +L     N  +++ PD       +  DE         G E+  + +
Sbjct: 746 -----NPEDKIYREILLTSVNNGQKLNYPDVHFRTTNEMLDEFA-----FLGEEKAFEVV 795

Query: 447 ITFGSLQAKA-----ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
           +T              ++D     ++  ++ D + KL   D AH    + + +    R  
Sbjct: 796 VTNTHWVNDQLEVIIPIKDDLYTPKIEGAE-DEITKL-SYDKAHEWYGEELPEIVEKR-- 851

Query: 502 RLADPSVDRLLEISQKLEGLYRHASTH 528
              D  +  ++     +  L      H
Sbjct: 852 --IDKELKSIIGNGFSVIYLISQKLVH 876


>gi|257876620|ref|ZP_05656273.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
 gi|257810786|gb|EEV39606.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
          Length = 1449

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 171/935 (18%), Positives = 323/935 (34%), Gaps = 195/935 (20%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  +  +            +L  T  G + L +L+S   +     +  RI  S L ++  
Sbjct: 599  NRHVGGENSYKAARPFHATILARTQAGLKNLFKLISMSNVKYFHDKVPRIPRSELVKL-R 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDR 194
            EGL++ T    G +  A        A +    +       K ++   L   L +      
Sbjct: 658  EGLLVGTACDKGEVFVAMMQKGVDAARELAKFYDYIEVMPKAVYAHLLETELVKSEKDLE 717

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                 +V++       +VAT N+ +L+EED     VL+        +        PD + 
Sbjct: 718  DIIRNLVKMGEELGKIVVATGNAHYLNEEDAIYRKVLINSMGG---ANPLNRHSLPDVHF 774

Query: 255  KNRSEMVSIFSDL-PEA-----LENTVEIARRCSFILQVHAPILPRFI---EKECDDIQK 305
            +   EM++ F  L PEA     + N  +IA  C  ++ V   +    I   E+E  D+  
Sbjct: 775  RTTDEMLTAFQFLGPEAAKEIVVTNPNKIADLCEKVIPVKDDLYTPKIPGSEQEITDLSY 834

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                EL                       +   +RL  EL+ I    FS  +LI    + 
Sbjct: 835  NRAKELYG-----------------DPLPEIVEKRLKKELDSIIGNGFSVIYLISQKLVH 877

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--------------------------- 398
             + ++   VG  RGS   S  A    IT+++PL                           
Sbjct: 878  KSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPDCQYSEFYEDGSYGSGYDMP 936

Query: 399  --------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL      +PD D++F  + + E   Y +  +G E V 
Sbjct: 937  EKKCPKCGTRLNKDGHDIPFETFLGFHGDKVPDIDLNFSGEYQPEAHNYTKVLFGEEYVY 996

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++  K A   V +  +  ++   R                              
Sbjct: 997  RAGTIGTVADKTAFGFV-KGFERDHNLHYRAA---------------------------- 1027

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
               VDRL   ++   G+ R    H  GI++      +    P+         +   T F+
Sbjct: 1028 --EVDRL---AKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNAEWKTTHFD 1082

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL------- 612
               I    ++K D LG    T+++   D        +D   IP DD E   +        
Sbjct: 1083 FHSIHD-NILKLDILGHDDPTVIRMLQDLSG-----IDPKTIPTDDPEVMRIFGGTDVLG 1136

Query: 613  -------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                   +  GTLGI +  +  +R  L+   P    +++ +  L     +          
Sbjct: 1137 VTEEQIYSKTGTLGIPEFGTRFVRGMLDQTHPSTFAELLQISGLSHGTDVWLG------- 1189

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N +E I      +  ++     +++Y    +  A L  G +    + +R+    KI +++
Sbjct: 1190 NAEELIRRGDASLAEVIGCRDDIMVY----LIHAGLDDGMAFKIMETVRKGQWNKIPDDL 1245

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
               ++ ++    +N + +    +  ++      Y F K+HAAAY +++ + A+ K ++P+
Sbjct: 1246 ---RDTYLQAMRENNVPEWYIDSCSKI-----KYMFPKAHAAAYVLMALRVAYFKVYFPI 1297

Query: 786  EFLAASMTLEMDNVEKIK---------------------------------KFCQDARQF 812
             +  A  ++  D+ + I                                  +   +  + 
Sbjct: 1298 LYYCAYFSVRADDFDLIAMSKGKDAVKERMQEITDKGLDASTKEKNLLTVLELANEMLER 1357

Query: 813  NIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              +     +     + F +   ++     A+  +G   A+ I+EA  D PF S ED  +R
Sbjct: 1358 GYEFGMIDLYKSDAENFVIDGKKLIAPFRAVPSLGLNVAKQIVEARKDGPFLSKEDLANR 1417

Query: 872  VDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
                K+++ ++E +   G L D    +++ L   L
Sbjct: 1418 ---GKVSKTLIEYMTDNGVLKDLPDENQLSLFDML 1449



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++   ++ + + +       AIAITD        +       AG++ + 
Sbjct: 337 VELHLHSNMSTMDATNNVADFVAQAGKWGHKAIAITDHGGAQGFPDAHHAGEKAGVKILY 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N    P      IV  V T
Sbjct: 397 GVEANIVDDGVAVAYNPQPVPLTDATYIVFDVET 430


>gi|116492651|ref|YP_804386.1| DNA polymerase III PolC [Pediococcus pentosaceus ATCC 25745]
 gi|122265885|sp|Q03FS8|DPO3_PEDPA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116102801|gb|ABJ67944.1| DNA polymerase III catalytic subunit, PolC type [Pediococcus
            pentosaceus ATCC 25745]
          Length = 1437

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 172/948 (18%), Positives = 316/948 (33%), Gaps = 207/948 (21%)

Query: 58   FSQKACA-AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+        +   +  K               +L+  T  G + L +LV
Sbjct: 579  FLKDAEERYGIEYHDQLNDHMTENEAYKHARPS--------HAILIAKTQAGLKNLFKLV 630

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +     +  RI  S L+++  EG+I+ +  SSG +  A        A ++   +  
Sbjct: 631  SMSNVK-YYYRVPRIPRSELEKL-REGIIVGSACSSGDVFTAMMQKGYADARRKAKFYDY 688

Query: 175  -----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                 K ++   +   L           + +V+L    ++P+VAT +  +L+ +DY    
Sbjct: 689  LEVMPKPVYQPLIEQELVSDNKKLEEIIANIVKLGEDLDIPVVATGDVHYLNPQDYIYRK 748

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
            +L+        +        PD + +   EM+  FS L        E+A +         
Sbjct: 749  ILINSQGG---ANPLNRSELPDVHFRTTDEMLEDFSFLG------PEVAHKIVVE----- 794

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDF 343
                  I    DD     +++L    + G E R+ Q ++ + +        +  ++RLD 
Sbjct: 795  --NSNKIADSVDDGISPVKDKLYTPKMPGAEDRIKQLSMDRAHALYGEVLPEIVQERLDK 852

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--- 400
            EL  I    FS  +LI    +  + K+   VG  RGS   S  A    IT+++PL     
Sbjct: 853  ELTSIIGNGFSVIYLIAQRLVHKSNKDGYLVG-SRGSVGSSFVATMSGITEVNPLPPHYR 911

Query: 401  --------------------------------------SLLFERFLNPDRMSMPDFDIDF 422
                                                   + FE FL      +PD D++F
Sbjct: 912  CPKCQYSFFYTKGEYGSGYDLPDKECPECGTWMIGDGQDIPFETFLGFKGDKVPDIDLNF 971

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D +     Y+Q  +G + V +  T G++  K A   V +A +   +Q           
Sbjct: 972  SGDYQPIAHNYMQVLFGKDNVFRAGTIGTVADKTAFGYV-KAYERDTNQ----------- 1019

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLS 540
                            R A         +  +++   G+ R    H AGI+I      + 
Sbjct: 1020 --------------HLRGA--------EIERLAKGATGVKRTTGQHPAGILIVPDYMDVY 1057

Query: 541  QLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+             T F+   I    ++K D LG    T+++K  D        +D
Sbjct: 1058 DFSPIQYPADDQTAAWETTHFDFHSIHD-NILKMDILGHDDPTMIRKLQDL-----SGID 1111

Query: 598  LSLIPFDDHETYHLLT--------------TKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
               IP DD     + +                GTLGI +  +  +R  LE   P    ++
Sbjct: 1112 PETIPTDDPGVMKIFSGPEVLGVDENQIQSKTGTLGIPEFGTRFVRGMLEETHPTSYSEL 1171

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            + +  L     +                 +   LI       + VI  ++ +M       
Sbjct: 1172 LQISGLSHGTDVWLG--------------NAEELIKAGTVTLKEVIGCRDNIMMDLIHYG 1217

Query: 704  GYS---LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
              S       + +R+   K I E              ++ +      + +        Y 
Sbjct: 1218 LDSQSSFQIMESVRKG--KGIPEG------------YEDKMRAANVPDWYIESCGKIKYM 1263

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK----------------- 803
            F ++HA+AY +++ + A+ K +YP+ + AA  T+  D+ + +                  
Sbjct: 1264 FPRAHASAYVLMALRIAYFKVYYPLVYYAAYFTVRADDFDIVSMARGKESLKNRMQEIND 1323

Query: 804  ----------------KFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVG 846
                            +   +  +   +     +      ++ +    +     A+ G+G
Sbjct: 1324 KGNDASTKEKNLLTVLELANEMLERGFEFKMIDIEKSDAEEWLIEGKSLIAPFNALPGLG 1383

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL-ESLVFAGALDC 893
               A+ I+ A ADKPF S ED   R    +     + E+ V +   D 
Sbjct: 1384 LNVAKQIVAARADKPFLSKEDLSKRGHVSQTLIDFMTENNVLSELPDE 1431



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++    +++++ + A    PA+A+TD   L +  E       +GI+ + 
Sbjct: 334 VELHLHTNMSTMDATNGISDLVGQAAKWGHPAVAVTDHAGLQAFPEAHAAGKKSGIKTLF 393

Query: 72  GC 73
           G 
Sbjct: 394 GV 395


>gi|255972152|ref|ZP_05422738.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|257079586|ref|ZP_05573947.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|257082034|ref|ZP_05576395.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|257084659|ref|ZP_05579020.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|257416589|ref|ZP_05593583.1| DNA polymerase III [Enterococcus faecalis AR01/DG]
 gi|255963170|gb|EET95646.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|256987616|gb|EEU74918.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|256990064|gb|EEU77366.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|256992689|gb|EEU79991.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|257158417|gb|EEU88377.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
          Length = 1439

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 573  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 625

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 626  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 683

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 684  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 743

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 744  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEV 800

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 801  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 843

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 844  EKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 902

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 903  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 962

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 963  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1006

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1007 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1048

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1049 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1102

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1103 IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1162

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1163 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1211

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1212 DSGMAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1263

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1264 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1323

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1324 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1383

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1384 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLPDENQLSLFDML 1439



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 328 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 387

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 388 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVET 421


>gi|257087409|ref|ZP_05581770.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|256995439|gb|EEU82741.1| DNA polymerase III [Enterococcus faecalis D6]
          Length = 1439

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 573  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 625

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 626  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 683

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 684  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 743

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 744  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEV 800

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 801  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 843

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 844  EKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 902

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 903  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 962

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 963  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1006

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1007 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1048

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1049 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1102

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1103 IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1162

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1163 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1211

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1212 DSGMAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1263

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1264 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1323

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1324 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1383

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1384 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLPDENQLSLFDML 1439



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 328 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 387

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 388 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVET 421


>gi|257419836|ref|ZP_05596830.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|257161664|gb|EEU91624.1| DNA polymerase III [Enterococcus faecalis T11]
          Length = 1439

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 573  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 625

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 626  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 683

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 684  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 743

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 744  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDIAKRIVVENPNKVADLCEEV 800

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 801  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 843

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 844  EKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 902

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 903  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 962

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 963  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1006

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1007 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1048

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1049 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1102

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1103 IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1162

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1163 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1211

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1212 DSGMAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1263

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1264 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1323

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1324 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1383

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1384 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLPDENQLSLFDML 1439



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 328 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 387

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 388 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVET 421


>gi|257090543|ref|ZP_05584904.1| DNA polymerase III polC [Enterococcus faecalis CH188]
 gi|256999355|gb|EEU85875.1| DNA polymerase III polC [Enterococcus faecalis CH188]
          Length = 1439

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 573  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 625

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 626  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 683

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 684  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 743

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 744  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEV 800

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 801  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 843

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 844  EKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 902

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 903  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 962

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 963  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1006

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1007 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1048

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1049 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1102

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1103 IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1162

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1163 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1211

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1212 DSGMAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1263

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1264 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1323

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1324 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1383

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1384 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLPDENQLSLFDML 1439



 Score = 75.4 bits (184), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AGI+ + 
Sbjct: 328 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGIKILY 387

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 388 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVET 421


>gi|21314372|gb|AAM46912.1|AF508325_1 DNA polymerase III C [Enterococcus faecalis]
          Length = 1439

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 174/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 573  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 625

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 626  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 683

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 684  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 743

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 744  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEV 800

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 801  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 843

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  FLI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 844  EKELNSINGNGFSVIFLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 902

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 903  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 962

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 963  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1006

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1007 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1048

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1049 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1102

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1103 IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1162

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1163 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1211

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1212 DSGMAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1263

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1264 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1323

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1324 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1383

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1384 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLPDENQLSLFDML 1439



 Score = 74.6 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 328 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 387

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 388 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVET 421


>gi|58337539|ref|YP_194124.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227904180|ref|ZP_04021985.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC 4796]
 gi|58254856|gb|AAV43093.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227868199|gb|EEJ75620.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC 4796]
          Length = 1437

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 170/883 (19%), Positives = 300/883 (33%), Gaps = 140/883 (15%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L     G + L +LVS     D   +  R   S L  +  EGL   +G   
Sbjct: 607  RARPSHMTVLAKNQAGLKNLYKLVSIASTKD-FYRIPRTPKSDLARLH-EGLFYGSGCWQ 664

Query: 153  GPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGY-DRYRESQVV----QLAY 205
            G +  A        A ++   +   ++   + Y  L       D  +  +++    +L  
Sbjct: 665  GDVFIAMMQKGYDEAREKARFYDFLEVQPPKNYSQLIEDGLIKDEEQLEEIISNIYKLGK 724

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                P+VAT ++ ++   D     +L++       S  +R +  PD +  +  EM+  FS
Sbjct: 725  ELNKPVVATGDAHYVEPHDAIYRTILISAQ----RSNPNRNKPQPDLHFYSTQEMLDAFS 780

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
             L E       +ENT +IA   S I  +   + P  IE          + E++       
Sbjct: 781  FLGEDIAKEIVIENTNKIADEISEIQPIKEGLYPPHIEH--------ADEEMKKLTYDKA 832

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                           +  + R+D ELN I    ++  +LI    +  + K+   VG  RG
Sbjct: 833  YELYGN------PLPKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRG 885

Query: 380  SGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFCQ-----D 425
            S   S+ A    IT+++PL         ++S  FE         +PD D   C      D
Sbjct: 886  SVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFENGEYGSGFDLPDKDCPECGTPLVKD 945

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +D         +G ++V  I    S   +    +  R +        R    I      
Sbjct: 946  GQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM-FGPDNSYR-AGTIATVADK 1002

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLV 543
                 A      F E R        L  ++  + G+ R    H AGIV+      +    
Sbjct: 1003 T----AYGYAKHFDEERDLKLRNAELDRLASGVRGVKRTTGQHPAGIVVVPDDMDIYDFT 1058

Query: 544  PM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+     DV +   +T ++   I    ++KFD LG    T+++   D        +D   
Sbjct: 1059 PVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDPTMIRHLQDL-----SGIDPLT 1112

Query: 601  IPFDDHETYHLLT--------------TKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            IP DD     L +                GTLG+ +  +  +R  LE  +P    +++ +
Sbjct: 1113 IPPDDPGVMSLFSGTKALGVTPEQIGSKTGTLGVPEFGTRFVRGMLEETKPTTFSELLQI 1172

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
              L     +      +   NG   +  +    D ++ +     +  E           +S
Sbjct: 1173 SGLSHGTDVWLGNAEDLINNGTCDLKDVIGCRDNIMMDLIHWGVKPEVA---------FS 1223

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
              E+    R +  +    + K K           I      +  ++      Y F K+HA
Sbjct: 1224 TMESVRHGRGISDENMAILQKNK----------NIPDWYIDSCLKI-----KYMFPKAHA 1268

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK----------------------- 803
             AY +++ + AW K +YP  +  A  ++  D  + +                        
Sbjct: 1269 TAYILMALRIAWFKVYYPEIYYTAYFSVRADLFDLVAMSHGKNTVKAAMKAIQDKGNDVS 1328

Query: 804  ----------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGTTTAR 851
                      +   +  +  I+I    ++     DFK+ D         A+ G+G   A+
Sbjct: 1329 AKDKSLLTVLEIANECLERGIKIKMVDIDQSEATDFKILDKHTILAPFNAVPGLGDNAAK 1388

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLE-SLVFAGALDC 893
             I+ A A+K F S ED   R    +      E + V  G  D 
Sbjct: 1389 QIVAARAEKKFLSKEDLAKRGKVSQTIMNYFEDNGVLDGMPDE 1431



 Score = 69.6 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 42/104 (40%)

Query: 2   TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           T+  +     V L +H++ S L+   +  + +       Q AIA+TD  ++ S  E    
Sbjct: 324 TEKYDGEKKRVELHLHTNMSQLDATNTPTDFIKTAKKFGQKAIAVTDHGDVQSFPEAYST 383

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
             +  ++ + G + ++     L + N     +     ++  V T
Sbjct: 384 GKSTDMKILYGVEANMIDDHALLVLNPAPMTYEDREFVIFDVET 427


>gi|307271493|ref|ZP_07552765.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
 gi|306511765|gb|EFM80763.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
          Length = 1451

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 585  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 755

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 756  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEV 812

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 813  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 855

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 856  EKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 914

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 915  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 974

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 975  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1018

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1019 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1060

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1061 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1114

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1115 IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1174

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1175 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1223

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1224 DSGMAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1275

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1276 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1335

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1336 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1395

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1396 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLPDENQLSLFDML 1451



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVET 433


>gi|293383603|ref|ZP_06629513.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|293387284|ref|ZP_06631841.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|312906153|ref|ZP_07765165.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
 gi|312909498|ref|ZP_07768353.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis DAPTO 516]
 gi|291079115|gb|EFE16479.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|291083321|gb|EFE20284.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|310627799|gb|EFQ11082.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
 gi|311290171|gb|EFQ68727.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis DAPTO 516]
          Length = 1451

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 585  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 755

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 756  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEV 812

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 813  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 855

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 856  EKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 914

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 915  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 974

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 975  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1018

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1019 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1060

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1061 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1114

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1115 IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1174

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1175 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1223

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1224 DSGMAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1275

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1276 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1335

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1336 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1395

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1396 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLPDENQLSLFDML 1451



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVVQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVET 433


>gi|229545206|ref|ZP_04433931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
 gi|300860665|ref|ZP_07106752.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis TUSoD Ef11]
 gi|229309751|gb|EEN75738.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
 gi|300849704|gb|EFK77454.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis TUSoD Ef11]
 gi|315035641|gb|EFT47573.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0027]
          Length = 1451

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 585  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 755

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 756  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEV 812

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 813  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 855

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 856  EKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 914

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 915  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 974

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 975  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1018

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1019 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1060

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1061 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1114

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1115 IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1174

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1175 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1223

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1224 DSGMAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1275

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1276 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1335

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1336 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1395

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1396 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLPDENQLSLFDML 1451



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVET 433


>gi|78044072|ref|YP_360592.1| DNA polymerase III subunit alpha [Carboxydothermus hydrogenoformans
            Z-2901]
 gi|77996187|gb|ABB15086.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Carboxydothermus hydrogenoformans Z-2901]
          Length = 1407

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 163/897 (18%), Positives = 308/897 (34%), Gaps = 165/897 (18%)

Query: 92   PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151
                   + +LV   EG   L  L++  +L     +  RI  S L     EGL++ T   
Sbjct: 578  DRSKTYHVSILVKNQEGLYNLYRLITLSHLK-YFHRHPRIPKSELMRY-REGLLIGTACE 635

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRGYDRYRE--SQVVQL 203
            +G +  A   N  +     +  F   F       +   +  QR +      E   +++ L
Sbjct: 636  AGELFTALLENQPESRILEIARFYDYFEIMPKGNNAFLLRNQRLKSEQELEELNRKIIAL 695

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                  P+VAT +  FL  ED     +L            D   + P  YLK   EM+  
Sbjct: 696  GEKLNKPVVATGDVHFLEPEDEIYRRILQKGQGY------DDAELQPPIYLKTTEEMLKE 749

Query: 264  FSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
            F+ L +  A E  V+  R+ +  ++   PI   F     +   ++       +A      
Sbjct: 750  FAYLGQEKAYEVVVDNPRKIAEQIEEIKPIPDEFYPPIIEGADRQIYEMTYQRAHE---- 805

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                  +      +   +RL  EL+ I    F+  +LI    ++ +  +   VG  RGS 
Sbjct: 806  ------LYGDPLPEIVEKRLKRELDAIINNGFAVLYLIAHKLVKKSLDDGYLVG-SRGSV 858

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S+ A    IT+++PL                                           
Sbjct: 859  GSSLVATMTMITEVNPLPPHYLCPNCRYSEFITDGSYGCGADMPDKNCPRCGTLLKKEGH 918

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE F+  +   +PD D++F  + +    +Y +  +G + V +  T  ++  K A   
Sbjct: 919  DIPFETFMGFEGDKVPDIDLNFSGEYQPRAHKYTEELFGKDYVFRAGTIATVADKTAFGF 978

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V +     + +  R  +                                 +  ++  + G
Sbjct: 979  VKKY----FEETGRPARQAW------------------------------INWLTNGIVG 1004

Query: 521  LYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLG 575
            + R    H  G+++  +   + +  P+          +  T F+   I  + L+K D LG
Sbjct: 1005 VKRTTGQHPGGLMVVPKNNDVHRFTPLQYPADDKSAGVVTTHFDYHSI-SSRLVKLDILG 1063

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
                T+L+   D        +D   I  DD +T  + ++   LG+   +         G+
Sbjct: 1064 HDDPTVLKMLEDLTG-----IDPRTIRLDDRKTLGIFSSTEPLGVTPEQIR-TTVGTYGI 1117

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQ 694
                   +  ++   RP     +V  +   +G +  ++    LI   + +    I  ++ 
Sbjct: 1118 PEFGTRFVRQMLEDTRPKSFTELVRISGFSHGTDVWLNNAQDLIRAGICKLSDAISTRDD 1177

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            +M I  L  G    +A  +   + K          E  I+   ++G+      +  ++  
Sbjct: 1178 IM-IYLLQKGVPPKKAFKIMENVRKGK-----GISEEEIAVMKEHGVPDWFIGSCQKI-- 1229

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKF 805
                Y F K+HA AY +++++ A+ K +YP  F A   T+  D+ +         KI K 
Sbjct: 1230 ---KYLFPKAHAVAYVMMAFRIAYFKVYYPEAFYATYFTVRADDFDLPVILAGPEKIWKT 1286

Query: 806  CQ------------------------DARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLA 840
                                      +     I+++P  +       F +    I     
Sbjct: 1287 LDELEQRGGNLTAKEKGLVTVLEVALEMLARGIKMLPVDLEKSDATRFLITPEGILPPFV 1346

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            A+ G+G   A +I++A  +  F S+ED  +R    K  + V+E L   G L     +
Sbjct: 1347 ALPGIGEAAAINIVKAREEGMFVSIEDLKTR---GKATKAVIEVLDAHGCLKGLAPT 1400



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L +HS  S ++  + L  +   + +    A+AITD   + +  E ++ +   GI+ I 
Sbjct: 308 IELHLHSKMSAMDSVVDLEKLFQTLKSWGHEAVAITDHGVVQAFPEAAELSAKYGIKVIY 367


>gi|331085480|ref|ZP_08334565.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330407718|gb|EGG87216.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 1492

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/938 (18%), Positives = 325/938 (34%), Gaps = 177/938 (18%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +     G+  +       DM       N            ++L     G   L  L
Sbjct: 619  VKFIEMLKERGMTTLKEVNAFGDM-------NPDAIKKMPTYHAIILAKNEVGRVNLYTL 671

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L     +  RI  S   +   EGLI+ +   +G + RA     S+    +++ + 
Sbjct: 672  VSLSHLK-YFARRPRIPKSEFNKY-REGLILGSACEAGELYRALLDGKSEETIAKIVDYY 729

Query: 176  KLFGDRLYVNLQRHRGYDRYRE-----------SQVVQLAYTHELPLVATNNSLFLSEED 224
                 +   N       ++ R             ++VQL    + P+VAT +  F+  + 
Sbjct: 730  DYLEIQPIGNNAFMIASEKQRNIKSEEDLKNMNRRIVQLGEKFQKPVVATCDVHFMDPDS 789

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCS 282
                 +   +      S  D     P  YL+   EM+  FS L   +A E  +    + +
Sbjct: 790  EVYRRI---IMTGKGFSDAD---SQPPLYLRTTEEMLEEFSYLGSKKAEEVVITNTNKIA 843

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
              ++  +P+ P     +C  + ++ +  LRN           +         +   +RL+
Sbjct: 844  DSIERISPVRP----DKCPPVIEDSDQTLRNICYDKAHSMYGEEL------PEIVVERLE 893

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             ELN I    F+  ++I    +  + ++   VG  RGS   S  A    IT+++PL    
Sbjct: 894  RELNSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFVATMAGITEVNPLSPHY 952

Query: 400  ------------------------------------------FSLLFERFLNPDRMSMPD 417
                                                      F + FE FL       PD
Sbjct: 953  YCTNCHYSDFESEEVRAFAGGCGWDMPDKVCPNCGQPLVKDGFDIPFETFLGFKGNKEPD 1012

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  D +    +Y +  +G  +  +  T G+L  K A   V    +  +    R C 
Sbjct: 1013 IDLNFSGDYQSNAHKYTEVIFGEGQTYRAGTIGTLAEKTAFGFVKNYYE-EHGSRKRKC- 1070

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD- 536
                                          ++R++E      G+ R    H  GI++   
Sbjct: 1071 -----------------------------EIERIVE---GCTGIRRSTGQHPGGIIVLPH 1098

Query: 537  -RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
               ++   P+         D+  T F+   I+   L+K D LG    T+++   + + Q 
Sbjct: 1099 GENINSFTPVQHPANDMTTDIITTHFDYHSIDH-NLLKLDILGHDDPTMIKMLEELVEQL 1157

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             G     + IP DD     L    G+LGI   +  G      G+     + +I +V   +
Sbjct: 1158 TGKPFKATEIPLDDPGVMQLFADTGSLGIKPSDIGGCPVGCLGIPEFGTDFVIQMVVDTK 1217

Query: 652  PGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSL 707
            P  + +++  +   +G +  + +   LI          I  ++ +M       + S  S 
Sbjct: 1218 PKTLSDLIRISGLSHGTDVWLNNAQTLIQEGKATISTAICTRDDIMTYLINTGMESELSF 1277

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            +  + +R+  G K + E              + +      + +    K   Y F K+HAA
Sbjct: 1278 TIMESVRKGKGLKTEWE--------------DAMKAAGVPDWYIWSCKKIKYMFPKAHAA 1323

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIKKF------------- 805
            AY +++Y+ A+ K +YP+ + AA  ++              EK++ +             
Sbjct: 1324 AYVMMAYRIAYCKVNYPLAYYAAYFSIRASAFSYELMCQGKEKLEFYLRDYKNRSDSLSK 1383

Query: 806  -----------CQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
                        Q+      + +P  +       F++ D ++   L++I+G+G   A  +
Sbjct: 1384 KDQDTLKDMRIVQEMYARGYEFLPLDIYRAKATKFQIIDGKLMPPLSSIEGMGDKAAEAV 1443

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              A+ D P+ S +DF  R    K     +  L   G L
Sbjct: 1444 EMAAEDGPYLSRDDFRQRTKVSKTVIDFMADLGMFGDL 1481



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
           V L  H+  S ++G      ++ +       AIAITD   + +  + 
Sbjct: 374 VELHCHTKMSDMDGVSEAQALVARAHDWGHQAIAITDHGVVQAFPDA 420


>gi|315025440|gb|EFT37372.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2137]
          Length = 1451

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 585  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 755

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 756  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEV 812

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 813  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 855

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 856  EKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 914

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 915  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 974

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 975  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1018

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1019 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1060

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1061 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1114

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1115 IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1174

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1175 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1223

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1224 DSGMAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1275

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1276 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1335

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1336 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1395

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1396 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLPDENQLSLFDML 1451



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVET 433


>gi|307287733|ref|ZP_07567776.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
 gi|306501471|gb|EFM70774.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
 gi|315032873|gb|EFT44805.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0017]
          Length = 1451

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 585  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 755

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 756  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEV 812

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 813  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 855

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 856  EKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 914

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 915  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 974

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 975  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1018

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1019 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1060

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1061 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1114

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1115 IEPKTIPTDDPEVMRIFEGPEVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1174

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1175 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1223

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1224 DSGMAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1275

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1276 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1335

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1336 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1395

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1396 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLPDENQLSLFDML 1451



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVET 433


>gi|229549448|ref|ZP_04438173.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|256853720|ref|ZP_05559085.1| DNA polymerase III PolC [Enterococcus faecalis T8]
 gi|257421977|ref|ZP_05598967.1| DNA polymerase III polC [Enterococcus faecalis X98]
 gi|294779462|ref|ZP_06744860.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis PC1.1]
 gi|307270863|ref|ZP_07552150.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
 gi|307277206|ref|ZP_07558310.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
 gi|307291051|ref|ZP_07570937.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
 gi|312953417|ref|ZP_07772257.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
 gi|229305685|gb|EEN71681.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|256710663|gb|EEU25706.1| DNA polymerase III PolC [Enterococcus faecalis T8]
 gi|257163801|gb|EEU93761.1| DNA polymerase III polC [Enterococcus faecalis X98]
 gi|294453468|gb|EFG21872.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis PC1.1]
 gi|306497900|gb|EFM67431.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
 gi|306506136|gb|EFM75302.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
 gi|306512776|gb|EFM81421.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
 gi|310628626|gb|EFQ11909.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
 gi|315030983|gb|EFT42915.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4000]
 gi|315146013|gb|EFT90029.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2141]
 gi|315146659|gb|EFT90675.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4244]
 gi|315152085|gb|EFT96101.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0031]
 gi|315155311|gb|EFT99327.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0043]
 gi|315159111|gb|EFU03128.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0312]
 gi|315161731|gb|EFU05748.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0645]
 gi|315166431|gb|EFU10448.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1341]
 gi|315173645|gb|EFU17662.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1346]
 gi|323481337|gb|ADX80776.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis 62]
 gi|327535664|gb|AEA94498.1| DNA polymerase III PolC [Enterococcus faecalis OG1RF]
 gi|329569948|gb|EGG51703.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1467]
          Length = 1451

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 585  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 755

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 756  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEV 812

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 813  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 855

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 856  EKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 914

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 915  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 974

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 975  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1018

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1019 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1060

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1061 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1114

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1115 IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1174

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1175 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1223

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1224 DSGMAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1275

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1276 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1335

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1336 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1395

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1396 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLPDENQLSLFDML 1451



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVET 433


>gi|315164832|gb|EFU08849.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1302]
          Length = 1451

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 585  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 755

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 756  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEV 812

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 813  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 855

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 856  EKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 914

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 915  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 974

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 975  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1018

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1019 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1060

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1061 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1114

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1115 IEPKTIPTDDPEVMRIFEGPEVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1174

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1175 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1223

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1224 DSGMAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1275

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1276 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1335

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1336 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1395

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1396 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLPDENQLSLFDML 1451



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVET 433


>gi|227513179|ref|ZP_03943228.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577]
 gi|227083560|gb|EEI18872.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577]
          Length = 1438

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 166/921 (18%), Positives = 309/921 (33%), Gaps = 185/921 (20%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
               + N  MT             V++     G + + ++VS   + D   +  R+  + L
Sbjct: 590  YHDELNDHMTENDAYKHARPSHAVIIAKNQVGLKNMFKIVSLSNV-DYFFRVPRVPRTQL 648

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL--LTFKKLFGDRLYVNL-QRHRGYD 193
            ++   EG+I+ +  SSG +  A        A K+     + ++   R Y  L + H   D
Sbjct: 649  EKF-REGIIVGSACSSGEVFTAMMQKGMDEARKKAGVYDYLEVQPKRAYAPLIESHLISD 707

Query: 194  RYRESQV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                 ++    V+L    + P+VAT +  +L+ +DY    +L+        +     +  
Sbjct: 708  EANLEEILTNIVKLGDELKKPVVATGDVHYLNPQDYIYRKILINSQGG---ANPLNRQEL 764

Query: 250  PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            PD +    +EM+  F+ L   +A E  V    R +  +    P+  R    + +      
Sbjct: 765  PDLHFLTTNEMLDDFAFLGAEKAKEIVVTNTNRITDDIDDVHPLKDRLYTPKMEG----S 820

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+E++ + +           + K         RL  EL  I    FS  +LI    +  +
Sbjct: 821  EDEIKERTMTTAHQ-WYGDPLPK-----IVDDRLTTELKSIIGNGFSVIYLIAQRLVAKS 874

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
             K+   VG  RGS   S+ A    IT+++PL                             
Sbjct: 875  NKDGYLVG-SRGSVGSSLVATLTGITEVNPLPPHYRCPNCQHTEFFTKGEYSSGYDLPRK 933

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                          ++ FE FL      +PD D++F  D +     Y +  +G + V + 
Sbjct: 934  KCPECGTQMIGDGHNIPFETFLGFTGNKVPDIDLNFSGDYQPIAHNYTKVLFGEKNVFRA 993

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V +A +       R               QA  D            
Sbjct: 994  GTIGTVADKTAYGYV-KAYERDKGTTYR---------------QAEED------------ 1025

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRSD---LPVTQFNMK 561
                   +++   G+ R    H AGI++   D  +    P+             T F+  
Sbjct: 1026 ------RLAKGATGVKRTTGQHPAGIIVVPADMDIYDFTPIQYPADDQTAAWKTTHFDFH 1079

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT-------- 613
             I    ++K D LG    T+++   D        ++   IP DD     + +        
Sbjct: 1080 SIHD-NILKIDILGHDDPTMIRMLQDL-----SGINPKSIPMDDPGVMSIFSSPKILGVS 1133

Query: 614  ------TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
                    GTLG+ +  +  +R  LE   P    +++ +  L     +         KNG
Sbjct: 1134 EEQIQSKTGTLGVPEFGTRFVRGMLEQTHPSNYSELLQISGLSHGTDVWLGNADELIKNG 1193

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
               I ++    D ++ +     +  E           + + E+    R +    +EEM  
Sbjct: 1194 TATIANVIGCRDNIMTDLIQWGLDSEL---------SFQIMESVRHGRGIPDDWQEEM-- 1242

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
                           K      +        Y F ++HAAAY +++ + A+ K ++P+ +
Sbjct: 1243 --------------RKAKIPEWYIDSCLKIKYMFPRAHAAAYILMALRIAYFKVYFPLVY 1288

Query: 788  LAASMTLEMDNVEKIK---------------------------------KFCQDARQFNI 814
             AA  ++  D+ + +                                  +   +  +   
Sbjct: 1289 YAAYFSVRADDFDIVSMCRGKEAVKNAMKQINDKGMEASTKEKNLLTVLELANEMLERGY 1348

Query: 815  QIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                  +     + + +  N +     ++ G+G   A+ I+ A  DKPF S ED   R  
Sbjct: 1349 VFKMVDLKKSAANQWLIDGNNLIAPFNSVPGLGLNVAKQIVAAREDKPFISKEDLSKRGK 1408

Query: 874  SKKLNRRVL-ESLVFAGALDC 893
              K     + E+ V  G  D 
Sbjct: 1409 VSKTLIDFMTENHVLDGLPDE 1429



 Score = 69.6 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+S S ++   ++ +   +  A   PA+AITD   +    +         ++ + 
Sbjct: 333 VELHLHTSMSQMDATNNIADYAKQAKAWGHPALAITDHAAVQGFPDAFHAGQKNDLKMLY 392

Query: 72  GC 73
           G 
Sbjct: 393 GV 394


>gi|312899805|ref|ZP_07759124.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
 gi|311293055|gb|EFQ71611.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
          Length = 1451

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 585  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 755

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 756  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEV 812

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 813  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 855

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 856  EKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 914

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 915  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 974

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 975  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1018

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1019 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1060

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1061 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1114

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1115 IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1174

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1175 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1223

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1224 DSGMAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1275

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1276 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1335

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1336 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1395

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1396 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLPDENQLSLFDML 1451



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVET 433


>gi|227524394|ref|ZP_03954443.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290]
 gi|227088625|gb|EEI23937.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290]
          Length = 1438

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 166/921 (18%), Positives = 309/921 (33%), Gaps = 185/921 (20%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
               + N  MT             V++     G + + ++VS   + D   +  R+  + L
Sbjct: 590  YHDELNDHMTENDAYKHARPSHAVIIAKNQVGLKNMFKIVSLSNV-DYFFRVPRVPRTQL 648

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNL-QRHRGYD 193
            ++   EG+I+ +  SSG +  A        A K+   +   ++   R Y  L + H   D
Sbjct: 649  EKF-REGIIVGSACSSGEVFTAMMQKGMDEARKKAGFYDYLEVQPKRAYAPLIESHLISD 707

Query: 194  RYRESQV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                 ++    V+L    + P+VAT +  +L+ +DY    +L+        +     +  
Sbjct: 708  EANLEEILTNIVKLGDELKKPVVATGDVHYLNPQDYIYRKILINSQGG---ANPLNRQEL 764

Query: 250  PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            PD +    +EM+  F+ L   +A E  V    R +  +    P+  R    + +      
Sbjct: 765  PDLHFLTTNEMLDDFAFLGAEKAKEIVVTNTNRIADDIDDVHPLKDRLYTPKMEG----S 820

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+E++ + +           + K         RL  EL  I    FS  +LI    +  +
Sbjct: 821  EDEIKERTMTTAHQ-WYGDPLPK-----IVDDRLKTELKSIIGNGFSVIYLIAQRLVAKS 874

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
             K+   VG  RGS   S+ A    IT+++PL                             
Sbjct: 875  NKDGYLVG-SRGSVGSSLIATLTGITEVNPLPPHYRCPNCQHTEFFTKGEYSSGYDLPRK 933

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                          ++ FE FL      +PD D++F  D +     Y +  +G + V + 
Sbjct: 934  KCPECGTQMIGDGHNIPFETFLGFTGNKVPDIDLNFSGDYQPIAHNYTKVLFGEKNVFRA 993

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V +A +       R               QA  D            
Sbjct: 994  GTIGTVADKTAYGYV-KAYERDKGTTYR---------------QAEED------------ 1025

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRSD---LPVTQFNMK 561
                   +++   G+ R    H AGI++   D  +    P+             T F+  
Sbjct: 1026 ------RLAKGATGVKRTTGQHPAGIIVVPADMDIYDFTPIQYPADDQTAAWKTTHFDFH 1079

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT-------- 613
             I    ++K D LG    T+++   D        ++   IP DD     + +        
Sbjct: 1080 SIHD-NILKIDILGHDDPTMIRMLQDL-----SGINPKSIPMDDPGVMSIFSSPKILGVS 1133

Query: 614  ------TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
                    GTLG+ +  +  +R  LE   P    +++ +  L     +         KNG
Sbjct: 1134 EEQIQSKTGTLGVPEFGTRFVRGMLEQTHPSNYSELLQISGLSHGTDVWLGNADELIKNG 1193

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
               I ++    D ++ +     +  E           + + E+    R +    +EEM  
Sbjct: 1194 TATIANVIGCRDNIMTDLIQWGLDSEL---------SFQIMESVRHGRGIPDDWQEEM-- 1242

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
                           K      +        Y F ++HAAAY +++ + A+ K ++P+ +
Sbjct: 1243 --------------RKAKIPEWYIDSCLKIKYMFPRAHAAAYILMALRIAYFKVYFPLVY 1288

Query: 788  LAASMTLEMDNVEKIK---------------------------------KFCQDARQFNI 814
             AA  ++  D+ + +                                  +   +  +   
Sbjct: 1289 YAAYFSVRADDFDIVSMCRGKEAVKNAMKQINDKGMEASTKEKNLLTVLELANEMLERGY 1348

Query: 815  QIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                  +     + + +  N +     ++ G+G   A+ I+ A  DKPF S ED   R  
Sbjct: 1349 VFKMVDLKKSAANQWLIDGNNLIAPFNSVPGLGLNVAKQIVAAREDKPFISKEDLSKRGK 1408

Query: 874  SKKLNRRVL-ESLVFAGALDC 893
              K     + E+ V  G  D 
Sbjct: 1409 VSKTLIDFMTENHVLDGLPDE 1429



 Score = 69.6 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+S S ++   ++ +   +  A   PA+AITD   +    +         ++ + 
Sbjct: 333 VELHLHTSMSQMDATNNIADYAKQAKAWGHPALAITDHAAVQGFPDAFHAGQKNDLKMLY 392

Query: 72  GC 73
           G 
Sbjct: 393 GV 394


>gi|315150171|gb|EFT94187.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0012]
          Length = 1451

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 585  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 755

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 756  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEV 812

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 813  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 855

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 856  EKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 914

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 915  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 974

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 975  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1018

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1019 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1060

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1061 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1114

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1115 IEPKTIPTDDPEVMRIFEGPEVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1174

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1175 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1223

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1224 DSGMAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1275

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1276 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1335

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1336 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1395

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1396 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLPDENQLSLFDML 1451



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVET 433


>gi|315170319|gb|EFU14336.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1342]
          Length = 1451

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 585  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 755

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 756  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEV 812

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 813  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 855

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 856  EKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 914

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 915  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 974

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 975  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1018

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1019 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1060

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1061 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1114

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1115 IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1174

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1175 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1223

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1224 DSGMAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1275

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1276 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1335

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1336 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1395

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1396 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLPDENQLSLFDML 1451



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVET 433


>gi|312903703|ref|ZP_07762877.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
 gi|310632895|gb|EFQ16178.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
 gi|315578694|gb|EFU90885.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0630]
          Length = 1451

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 585  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 755

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 756  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEV 812

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 813  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 855

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 856  EKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 914

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 915  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 974

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 975  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1018

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1019 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1060

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1061 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1114

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1115 IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1174

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1175 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1223

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1224 DSGMAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1275

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1276 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1335

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1336 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1395

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1396 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLPDENQLSLFDML 1451



 Score = 75.4 bits (184), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AGI+ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGIKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVET 433


>gi|29376875|ref|NP_816029.1| DNA polymerase III PolC [Enterococcus faecalis V583]
 gi|227519898|ref|ZP_03949947.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227553915|ref|ZP_03983962.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
 gi|29344340|gb|AAO82099.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis V583]
 gi|227072692|gb|EEI10655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227176901|gb|EEI57873.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
 gi|315574385|gb|EFU86576.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309B]
 gi|315580141|gb|EFU92332.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309A]
          Length = 1451

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/959 (18%), Positives = 329/959 (34%), Gaps = 203/959 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A               D+  ++   +  K   P      +L +T  G + L +L+S
Sbjct: 585  FLKEAKEN-----HDMHFHDDLNRHIGEGDSYKRARP--FHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               + D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSNV-DYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        S +V++       +VAT N  +L+EED     +
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKI 755

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   EM++ F  L +       +EN  ++A  C  +
Sbjct: 756  LVGSMGG---ANPLNRHSLPKVHFRTTDEMLTEFQFLGQDIAKRIVVENPNKVADLCEEV 812

Query: 285  LQVHAPILPRFI---EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + V   +    I   E+E  D+      EL                       +   +RL
Sbjct: 813  IPVKDDLYTPKIPGSEQEITDLSYNRARELYG-----------------DPLPEIVEKRL 855

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--- 398
            + ELN I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 856  EKELNSINGNGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPH 914

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 915  YYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDL 974

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D + E   Y +  +G E V +  T G++  K A   V                   
Sbjct: 975  NFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY---------------- 1018

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
                            R     L    +DRL   ++   G+ R    H  GI++      
Sbjct: 1019 ---------------ERDHNLHLRGAEIDRL---AKGSTGVKRTTGQHPGGIIVIPDYMD 1060

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+   I    ++K D LG    T+++   D        
Sbjct: 1061 VYDFTPIQYPADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SG 1114

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   IP DD E   +               +  GTLGI +  +  +R  LE   P    
Sbjct: 1115 IEPKTIPTDDPEVMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFA 1174

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +         + G+         +  ++     +++Y    +  A L
Sbjct: 1175 ELLQISGLSHGTDVWLGNAEELIRRGEAN-------LAEVIGCRDDIMVY----LIHAGL 1223

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             SG +    + +R+    KI +E+             N + +    + +        Y F
Sbjct: 1224 DSGMAFKIMETVRKGQWNKIPDEL--------RDTYLNAMKENNVPDWYIDSCSKIKYMF 1275

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------ 803
             K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + +                   
Sbjct: 1276 PKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDK 1335

Query: 804  ---------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           + C +  +   +     +     + F +  + +     A+  +G 
Sbjct: 1336 GMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGL 1395

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
              A+ I+ A  ++PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1396 NVAKAIVAAREEQPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLPDENQLSLFDML 1451



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +I         N+          +V  V T
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVET 433


>gi|325660790|ref|ZP_08149418.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325472864|gb|EGC76074.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 1492

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 171/938 (18%), Positives = 320/938 (34%), Gaps = 177/938 (18%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +     G+  +       DM       N            ++L     G   L  L
Sbjct: 619  VKFIEMLKERGMTTLKEVNAFGDM-------NPDAIKKMPTYHAIILAKNEVGRVNLYTL 671

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L     +  RI  S   +   EGLI+ +   +G + RA     S+    +++ + 
Sbjct: 672  VSLSHLK-YFSRRPRIPKSEFNKY-REGLILGSACEAGELYRALLDGKSEETIAKIVDYY 729

Query: 176  KLFGDRLYVNLQRHRGYDRYRE-----------SQVVQLAYTHELPLVATNNSLFLSEED 224
                 +   N       ++ R             ++VQL    + P+VAT +  F+  + 
Sbjct: 730  DYLEIQPIGNNAFMIASEKQRNIKSEEDLKNMNRRIVQLGEKFQKPVVATCDVHFMDPDS 789

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCS 282
                 +   +      S  D     P  YL+   EM+  FS L   +A E  +    + +
Sbjct: 790  EVYRRI---IMTGKGFSDAD---SQPPLYLRTTEEMLEEFSYLGSKKAEEVVITNTNKIA 843

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
              ++  +P+ P     +C  + ++ +  LRN           +         +   +RL+
Sbjct: 844  DSIERISPVRP----DKCPPVIEDSDQTLRNICYDKAHSMYGEEL------PEIVVERLE 893

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             ELN I    F+  ++I    +  + ++   VG  RGS   S  A    IT+++PL    
Sbjct: 894  RELNSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFVATMAGITEVNPLSPHY 952

Query: 400  ------------------------------------------FSLLFERFLNPDRMSMPD 417
                                                      F + FE FL       PD
Sbjct: 953  YCTNCHYSDFESEEVRAFAGGCGWDMPDKVCPNCGQPLVKDGFDIPFETFLGFKGNKEPD 1012

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  D +    +Y +  +G  +  +  T G+L  K A   V                
Sbjct: 1013 IDLNFSGDYQSNAHKYTEVIFGEGQTYRAGTIGTLAEKTAFGFVKNYY------------ 1060

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD- 536
                                  E   +      +  I +   G+ R    H  GI++   
Sbjct: 1061 ----------------------EEHGSRKRKCEIERIVEGCTGIRRSTGQHPGGIIVLPH 1098

Query: 537  -RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
               ++   P+         D+  T F+   I+   L+K D LG    T+++   + + Q 
Sbjct: 1099 GENINSFTPVQHPANDMTTDIITTHFDYHSIDH-NLLKLDILGHDDPTMIKMLEELVEQL 1157

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             G     + IP DD     L    G+LGI   +  G      G+     + +I +V   +
Sbjct: 1158 TGKPFKATEIPLDDPGVMQLFADTGSLGIKPSDIGGCPVGCLGIPEFGTDFVIQMVVDTK 1217

Query: 652  PGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSL 707
            P  + +++  +   +G +  + +   LI          I  ++ +M       + S  S 
Sbjct: 1218 PKTLSDLIRISGLSHGTDVWLNNAQTLIQEGKATISTAICTRDDIMTYLINTGMESELSF 1277

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            +  + +R+  G K + E              + +      + +    K   Y F K+HAA
Sbjct: 1278 TIMESVRKGKGLKPEWE--------------DAMKAAGVPDWYIWSCKKIKYMFPKAHAA 1323

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIKKF------------- 805
            AY +++Y+ A+ K +YP+ + AA  ++              EK++ +             
Sbjct: 1324 AYVMMAYRIAYCKVNYPLAYYAAYFSIRASAFSYELMCQGKEKLEFYLRDYKNRSDSLSK 1383

Query: 806  -----------CQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
                        Q+      + +P  +       F++ D ++   L++I+G+G   A  +
Sbjct: 1384 KDQDTLKDMRIVQEMYARGYEFLPLDIYRAKATKFQIIDGKLMPPLSSIEGMGDKAAEAV 1443

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              A+ D P+ S +DF  R    K     +  L   G L
Sbjct: 1444 EMAAEDGPYLSRDDFRQRTKVSKTVIDFMADLGMFGDL 1481



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
           V L  H+  S ++G      ++ +       AIAITD   + +  + 
Sbjct: 374 VELHCHTKMSDMDGVSEAQALVARAHDWGHQAIAITDHGVVQAFPDA 420


>gi|110808209|sp|P0C1P9|DPO3_STAAU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|1483182|dbj|BAA13160.1| DNA polymerase III [Staphylococcus aureus]
          Length = 1435

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 172/942 (18%), Positives = 323/942 (34%), Gaps = 198/942 (21%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 580  VQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 638

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 639  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQ 697

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 698  DLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 757

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 758  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 813

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  + A       +         Q    RL+ EL  I    F+  +
Sbjct: 814  PRMEGAN----EEIRELSYANARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 863

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 864  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 922

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE+FL      +PD D++F  + +     Y + 
Sbjct: 923  VGSGFDLPDKTCETCGAPLIKEGQDIPFEKFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 982

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K              
Sbjct: 983  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVK-------------- 1028

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
                                        G+      H  GI++      +    P+    
Sbjct: 1029 -------------------------GCTGVKATTGQHPGGIIVVPDYMDIYDFTPIQYPA 1063

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S    T F+   I    ++K D LG    T+++   D        +D   IP DD 
Sbjct: 1064 DDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDK 1117

Query: 607  ETYHLLTTKGTLGIFQLES-------------SGMRQALEGMQPDCIEDIIALVSLYRPG 653
            E   + +T  +LG+ + E                 RQ LE  +P    +++ +  L    
Sbjct: 1118 EVMQIFSTPESLGVTEDEILCKTGTFGVPNSDRIRRQMLEDTKPTTFSELVQISGLSHGT 1177

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             +                 +   LI   + +   VI  ++ +M +  + +G   S A  +
Sbjct: 1178 DVWLG--------------NAQELIKTGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFKI 1222

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
              ++ K          E  I    +N +      +  ++      Y F K+HAAAY +++
Sbjct: 1223 MESVRKGK-----GLTEEMIETMKENEVPDWYLDSCLKI-----KYIFPKAHAAAYVLMA 1272

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVE--------------------------------- 800
             + A+ K H+P+ + A+  T+   + +                                 
Sbjct: 1273 VRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDVL 1332

Query: 801  KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
             + +   +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA  D
Sbjct: 1333 TVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEARDD 1392

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             PF S ED   +    +   +++E L   G+L      + QL
Sbjct: 1393 GPFLSKEDLNKKAGLYQ---KIIEYLDELGSLPNL-PDKAQL 1430



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 393

Query: 72  GCQLD 76
           G +  
Sbjct: 394 GMEGM 398


>gi|218288332|ref|ZP_03492631.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            LAA1]
 gi|218241691|gb|EED08864.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            LAA1]
          Length = 1440

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 183/950 (19%), Positives = 314/950 (33%), Gaps = 190/950 (20%)

Query: 45   AITDTNNLFSA-LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
            A+ D+       +   + A A GI  ++             +  Q            +LV
Sbjct: 572  ALADSEATAKVFVHMLKDAKARGIHNLLDMNH---------LRGQIDISRVRPFHATVLV 622

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
               EG + L  LVS  +      +  RI  S L     EGL++ T    G +  AFF   
Sbjct: 623  RNREGLRNLYRLVSIAHT-QYLHRVPRIPKSALAR-HREGLLIGTACRQGELVEAFFRGK 680

Query: 164  SQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVVQLAYTHEL 209
            S+     LL F        Y+ +Q    Y+              R     +V +      
Sbjct: 681  SEDEIDTLLEFYD------YLEIQPVSHYEPLVREGVVASFEQVRELLRNIVDIGKRLNK 734

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT +  +L E D    ++ +                 P  + +   EM+  F+ L E
Sbjct: 735  PVVATGDVHYLDEHDAIFREIFLQSQKVDTK--------QPPLHFRTTDEMLEEFAFLGE 786

Query: 270  ALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
                 V I    R   + +   PI         D      E+E+R  A      R+    
Sbjct: 787  EDARAVVIDNPRRLVALCEDVKPIPDELHTPVIDGA----EDEIRRLAYDKA-KRIYGDP 841

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
            +      +   +RL+ ELN I    ++  +LI    +  +  +   VG  RGS   S+ A
Sbjct: 842  L-----PEIVEKRLERELNAIISHGYAVIYLIAHKLVTKSLSDGYLVG-SRGSVGSSLVA 895

Query: 388  YALTITDIDPLRF-----------------------------------------SLLFER 406
                IT+++PL                                            + FE 
Sbjct: 896  TMTDITEVNPLPPHYVCLSCHYHEFFLRGEYGSGFDLPDKACPKCGAKLHKDGQDIPFET 955

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            F+  D   +PD D++F  + +    RY +  +G + V +  T   +  K A   V +   
Sbjct: 956  FMGFDGDKVPDIDLNFSGEYQPRAHRYTEELFGKDHVFRAGTISVVAEKTAYGYVRKF-- 1013

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
                                         +  R   L +  ++RL+   +   G+ R   
Sbjct: 1014 -----------------------------AEERGLVLRNAEIERLV---RGCTGVKRTTG 1041

Query: 527  THAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  G V+      +    P+     D  S+   T F+     +  L+K D LG    T+
Sbjct: 1042 QHPGGQVVVPHYVEIYDFTPIQYPADDTSSETLTTHFDYHSGLENCLLKLDILGHDDPTV 1101

Query: 582  LQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   D        VD   IP DD +   L  +   LG+   E          +      
Sbjct: 1102 IRMLQDLTG-----VDPKSIPLDDPDVLELFRSTRPLGVTPEEIRSTTGTY-AIPEFGTR 1155

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             +  ++   RP     +V  +   +G +  + +   LI   +     VI  ++ +M +  
Sbjct: 1156 FVRQMLEDTRPTTFSELVRISGLSHGTDVWLNNAQTLIREQIATLSEVICARDDIM-LYL 1214

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +  G   + A  +   + K             +    +  + +    + +    K   Y 
Sbjct: 1215 IQKGLDPARAFKIMEGIRKGKG----------VKPEDEAYMREHGVPDWYIESGKKIKYM 1264

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD--- 808
            F K+HAAAY +++ + AW K H P+ F A   T+  D+ +          I K   +   
Sbjct: 1265 FPKAHAAAYVLMAVRIAWFKVHRPLAFYATYFTVRADDFDVAVMTAGREAILKKIDEIEA 1324

Query: 809  ------ARQF---------------NIQIMPPS-VNTPCVDFKVGDNRI--YYSLAAIKG 844
                  A++                  + +P     +    F + +         AAI G
Sbjct: 1325 KGNAASAKEKSFLTVLEVALEMVARGYRFLPIDLYKSHATHFLIDEEARGLRPPFAAIPG 1384

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +G T AR++ EA+    F SLED  SR  + +    VL   +  G LD  
Sbjct: 1385 IGETAARNLYEAAQHGEFLSLEDLQSRARASRAVIDVL---MELGCLDGL 1431



 Score = 87.7 bits (216), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 41/98 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S L+G +S   ++ + A     AIAITD     +  E  Q A   G++ ++
Sbjct: 340 VELHAHTTMSALDGVVSAAALVKRAAEWGHDAIAITDHGVCQAYPEAYQAAKKHGVRLVL 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
           G +  +     L +  +   P       V+  +   G 
Sbjct: 400 GVEAYVVDDGGLLVYRECDRPLDDETEYVVFDTETTGL 437


>gi|163815213|ref|ZP_02206590.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759]
 gi|158449408|gb|EDP26403.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759]
          Length = 1623

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 167/912 (18%), Positives = 329/912 (36%), Gaps = 143/912 (15%)

Query: 83   LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
            L  T+            ++L     G   L  L+S  +L     +  R+ +S + +   E
Sbjct: 743  LGSTSPDAIKKDKTYHGIILAKNEIGRVNLYRLISESHLT-YFARRPRMPMSLINKY-RE 800

Query: 143  GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-------- 194
            GLI+ +   +G + RA   ++      RL+ +      +   N +      R        
Sbjct: 801  GLILGSACEAGELFRAIVDDAPDEEIVRLVNWFDYLEIQPIGNNEFMTRDTRNPKTMDDL 860

Query: 195  -YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                 ++V+L      P+VAT +  FL+ EDY    ++M           D   + P  Y
Sbjct: 861  IEYNKRIVELGEMFNKPVVATCDVHFLNPEDYIYRAIIMKSKGF------DDADMQPPLY 914

Query: 254  LKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +   EM++ F  L   +A E  +      + +++   P+ P       ++  +   +  
Sbjct: 915  FRTTEEMLAEFQYLGSDKAREVVITNTNMIADMVERIEPVRPDKAPPIIENSDQTLTDIC 974

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
              KA            I         ++RLD EL+ I    F+  ++I    +  +  + 
Sbjct: 975  YTKAHQ----------IYGPELPPQVQERLDRELHSIISNGFAVMYIIAQKLVWDSNDHG 1024

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLR-------------------------------- 399
              VG  RGS   S  A    IT+++PL                                 
Sbjct: 1025 YLVG-SRGSVGSSFVATMAGITEVNPLSAHYICPKCHFVDFDSELVKSYSGMSGCDMPDR 1083

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL  +    PD D++F  + + +   Y +  +G  +  + 
Sbjct: 1084 DCPNCGTPLIKEGHDIPFETFLGFNGDKEPDIDLNFSGEYQSKAHAYTEVLFGKGKAFKA 1143

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G +  K A   V    +  +S+ + + +   +      + +   +++   + R    
Sbjct: 1144 GTVGGVAEKTAFGYVYNYFK-DHSKEELMAEAKASGMDEKAAKKYAEENATVTKRRCEME 1202

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMK 561
                   ++    G+ R    H  G+++  R   +    P+     DV SD+  + F   
Sbjct: 1203 R------LALGCTGVRRTTGQHPGGMIVLPRHEEIYSFTPIQHPANDVTSDIITSHFEYH 1256

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I+   L+K D LG    T++++  D       K+ L     DD +   L  +  +LGI 
Sbjct: 1257 SIDH-NLLKLDILGHDDPTMIRRLEDLTGLDATKIRL-----DDKDVMELFHSTKSLGIT 1310

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              + +G+     G+     +  + ++   +P    ++V      +G +  + +   LI  
Sbjct: 1311 PEDINGIPLGSLGVPEFGTDFAMQMLIDAKPTCFSDLVRIAGLAHGTDVWLGNAQELIKS 1370

Query: 681  MLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
                    I  ++ +M       L +G + +  + +R+ +  K K     + E + +  +
Sbjct: 1371 GKCTISTAICCRDDIMVYLIHMGLDAGLAFNIMEKVRKGIVAKGK---CDKWEDWKAEMA 1427

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             +G+        +    +   Y F K+HAAAY +++++ AW K +YP+E+  A  ++  D
Sbjct: 1428 AHGVPD-----WYVWSCQKIKYMFPKAHAAAYVMMAWRIAWFKVNYPLEYYTAFFSIRAD 1482

Query: 798  NVE----------------------------------KIKKFCQDARQFNIQIMPPSVNT 823
            +                                    K  K   +        +P  +  
Sbjct: 1483 DFSYEMMCFGKERVLFHINEISKVDKNKRSAKDEGKLKDLKIVLEMYARGYDFVPIDIYK 1542

Query: 824  PCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
               D F++ D +I  S A+I+G+G   A+ + EA+   PF S E+   R    K+ +  +
Sbjct: 1543 AKADRFQIIDGKIMPSFASIEGMGEKAAQQLYEAAQKGPFLSKEEINERA---KIGKGTI 1599

Query: 883  ESLVFAGALDCF 894
            E +   G LD  
Sbjct: 1600 EKMSELGILDGM 1611



 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           V L +H+  S ++  + +  I+ + +    PAIAITD   +
Sbjct: 481 VELHMHTKMSEMDSVVDIETIVKRASDWGHPAIAITDHGVV 521


>gi|237795859|ref|YP_002863411.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum Ba4 str. 657]
 gi|229260819|gb|ACQ51852.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum Ba4 str. 657]
          Length = 1432

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 169/910 (18%), Positives = 315/910 (34%), Gaps = 183/910 (20%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
               +++LV  A G + L +LVS+  L +   +  R+  S + E   EGLI+ +   +G I
Sbjct: 606  TYHLIILVKNAVGLKNLYKLVSKSNL-EYFFKRPRMAKSLINEY-KEGLIIGSACEAGQI 663

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVV 201
             +      ++   K ++ F        Y+ +Q     +                   ++ 
Sbjct: 664  YKEILKGKTKEELKNMIDFYD------YLEIQPLGNNEFLVKNGSVKDEKELEEINKKIC 717

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +L   +  P+VAT +  FL EE      +LM+    +           P  Y +   EM+
Sbjct: 718  ELGEFYNKPVVATCDVHFLDEEHEVFRRILMSGQGFSDADN------QPPLYFRTTEEML 771

Query: 262  SIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
              F  L E  A E  +    + + ++    PI       + +      E ++R   +   
Sbjct: 772  KEFEYLGEEKAKEVVIYNTNKIADMIDEIKPIPEETFPPKIEGA----EEDIRRMTIEKA 827

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                   AI      +   +RL  ELN I    ++  +LI    +  + ++   VG  RG
Sbjct: 828  H------AIYGDPLPEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SRG 880

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S  A    IT+++ L                                         
Sbjct: 881  SVGSSFAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIKD 940

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A 
Sbjct: 941  GHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTAY 1000

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V + L                                 +  +  +  ++RL   S+  
Sbjct: 1001 GFVKKYLDE-------------------------------KNIKANNAEIERL---SKGC 1026

Query: 519  EGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDF 573
             G+ R +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D 
Sbjct: 1027 TGVKRTSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSI-SGRLLKLDI 1085

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            LG    T+L+   D       +VD   +P  D +   L T+   LG+ + +         
Sbjct: 1086 LGHDDPTVLRMLQDL-----TQVDPKSVPLGDPKVISLFTSPEALGVTEEDID-CPVGTY 1139

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQ 692
            G+     + +  ++   +P     +V  +   +G +  ++     I       +  I  +
Sbjct: 1140 GLPEFGTKFVRQMLLDTKPKSFAELVRISGLSHGTDVWLNNAQYFIKEGYTTIKDCISTR 1199

Query: 693  EQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            + +M      +L    + +  + +R+   K + EE +              + +    + 
Sbjct: 1200 DDIMVYLLQKELPPKSAFTIMEKVRKG--KGLTEEQEAL------------MKEHDVPDW 1245

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------- 800
            +    K   Y F K HA AY +++ + A+ K +YP  + A   ++  D+ +         
Sbjct: 1246 YIESCKKIKYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADLIVKGEE 1305

Query: 801  KIKKFCQ------------------------DARQFNIQIMPPSVNTP-CVDFKVGDNRI 835
            KIK+                           +  +  I+ +   +       F +  + I
Sbjct: 1306 KIKEKMNELYAMGNNITQKDKGLLTILEISYEMYKRGIKFLKVDLYKSNATKFLIEGDSI 1365

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L+A++GVG   A+ I E+  +  F S ED   R    K     LE+    G L    
Sbjct: 1366 RPPLSALQGVGKNAAKSIEESRLEGEFISKEDLRLRTKVTKTVIETLEN---HGCLRGMQ 1422

Query: 896  YSRMQLLQSL 905
             +    L SL
Sbjct: 1423 ETNQISLFSL 1432



 Score = 80.8 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++G   ++ ++ + A     A+AITD   + +  +    A  + I+ I 
Sbjct: 333 VELHMHSQMSAMDGMTPVSELVKRAAKWGHKAVAITDHGVVQAYPDAMSAAKKSNIKVIY 392


>gi|168184630|ref|ZP_02619294.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum Bf]
 gi|182672306|gb|EDT84267.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum Bf]
          Length = 1432

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 169/910 (18%), Positives = 315/910 (34%), Gaps = 183/910 (20%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
               +++LV  A G + L +LVS+  L +   +  R+  S + E   EGLI+ +   +G I
Sbjct: 606  TYHLIILVKNAVGLKNLYKLVSKSNL-EYFFKRPRMAKSLINEY-KEGLIIGSACEAGQI 663

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVV 201
             +      ++   K ++ F        Y+ +Q     +                   ++ 
Sbjct: 664  YKEILKGKTKEELKNMIDFYD------YLEIQPLGNNEFLVKNGSVKDEKELEEINKKIC 717

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +L   +  P+VAT +  FL EE      +LM+    +           P  Y +   EM+
Sbjct: 718  ELGEFYNKPVVATCDVHFLDEEHEVFRRILMSGQGFSDADN------QPPLYFRTTEEML 771

Query: 262  SIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
              F  L E  A E  +    + + ++    PI       + +      E ++R   +   
Sbjct: 772  KEFEYLGEEKAKEVVIYNTNKIADMIDEIKPIPEETFPPKIEGA----EEDIRRMTIEKA 827

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                   AI      +   +RL  ELN I    ++  +LI    +  + ++   VG  RG
Sbjct: 828  H------AIYGDPLPEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SRG 880

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S  A    IT+++ L                                         
Sbjct: 881  SVGSSFAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIKD 940

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A 
Sbjct: 941  GHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTAY 1000

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V + L                                 +  +  +  ++RL   S+  
Sbjct: 1001 GFVKKYLDE-------------------------------KNIKANNAEIERL---SKGC 1026

Query: 519  EGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDF 573
             G+ R +  H  GI++   D  +    P+     D  SD+  T F+   I    L+K D 
Sbjct: 1027 TGVKRTSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSI-SGRLLKLDI 1085

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            LG    T+L+   D       +VD   +P  D +   L T+   LG+ + +         
Sbjct: 1086 LGHDDPTVLRMLQDL-----TQVDPKSVPLGDPKVISLFTSPEALGVTEEDID-CPVGTY 1139

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQ 692
            G+     + +  ++   +P     +V  +   +G +  ++     I       +  I  +
Sbjct: 1140 GLPEFGTKFVRQMLLDTKPKSFAELVRISGLSHGTDVWLNNAQYFIKEGYTTIKDCISTR 1199

Query: 693  EQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            + +M      +L    + +  + +R+   K + EE +              + +    + 
Sbjct: 1200 DDIMVYLLQKELPPKSAFTIMEKVRKG--KGLTEEQEAL------------MKEHDVPDW 1245

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------- 800
            +    K   Y F K HA AY +++ + A+ K +YP  + A   ++  D+ +         
Sbjct: 1246 YIESCKKIKYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADLIVKGEE 1305

Query: 801  KIKKFCQ------------------------DARQFNIQIMPPSVNTP-CVDFKVGDNRI 835
            KIK+                           +  +  I+ +   +       F +  + I
Sbjct: 1306 KIKEKMNELYAMGNNITQKDKGLLTILEISYEMYKRGIKFLKVDLYKSNATKFLIEGDSI 1365

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L+A++GVG   A+ I E+  +  F S ED   R    K     LE+    G L    
Sbjct: 1366 RPPLSALQGVGKNAAKSIEESRLEGEFISKEDLRLRTKVTKTVIETLEN---HGCLRGMQ 1422

Query: 896  YSRMQLLQSL 905
             +    L SL
Sbjct: 1423 ETNQISLFSL 1432



 Score = 80.8 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++G   ++ ++ + A     A+AITD   + +  +    A  + I+ I 
Sbjct: 333 VELHMHSQMSAMDGMTPVSELVKRAAKWGHKAVAITDHGVVQAYPDAMSAAKKSNIKVIY 392


>gi|227890631|ref|ZP_04008436.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
 gi|227867569|gb|EEJ74990.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
          Length = 1451

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 158/923 (17%), Positives = 303/923 (32%), Gaps = 166/923 (17%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++     Q+      N  +              ++L  T EG + L +L S   ++    
Sbjct: 593  LKDAEEKQILYHDDFNKHVGENDAYKHEHPSHAIILAKTQEGLKNLFKLTSES-MVKYFY 651

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLFG 179
            +  R+  S L++   EGLI+ +  + G +  A       +A+++   +       K L+ 
Sbjct: 652  RVPRVPRSILEKY-REGLIVGSACADGEVFTAMMQKGYTIAKQKAEFYDYLEVQPKPLYE 710

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              L   L +         + +V+LA+  + P+VAT +  F+++ED     +L+       
Sbjct: 711  PLLEQELVKDNDNLEEIITNMVKLAHELDKPIVATGDVHFMNKEDAIYRKILIHSQAGA- 769

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +  +R +  PD + +   EM+  FS L E  A E  V    +    +    P+  +   
Sbjct: 770  -NPLNRLKKLPDAHFRTTDEMLEEFSFLGEDIAKEIVVTNPNKLVDEISEITPVKDKLYT 828

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +  +++  +   N+A A     L           +  ++RLD EL  +    FS  +
Sbjct: 829  PKMEGAEQDIHDLTMNRAHAWYGDTL----------PEIVQKRLDKELKSVIGNGFSVIY 878

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    +  + K+   VG  RGS   S+ A    IT+++PL                   
Sbjct: 879  LISQKLVYKSNKDGYLVG-SRGSVGSSLVATMTGITEVNPLPPHYRCPKCKWTHFYEKGE 937

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  D +     Y + 
Sbjct: 938  YGSGYDLPDKDCPNCGTELIKDGQDIPFETFLGFKGNKVPDIDLNFSGDYQPIAHNYTKV 997

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G   V +  T G++  K A   V                            +A   D+
Sbjct: 998  LFGENNVYRAGTIGTVADKTAYGYV----------------------------KAYERDT 1029

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +     +  +++   G+ R    H AGI++      +    P+         
Sbjct: 1030 E------QNFRGAEIDRLAKGATGVKRTTGQHPAGILVVPDYMDIYDFTPIQYPADDLTA 1083

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
                T F+   I    ++K D LG    T+++   D        +D   IP DD     L
Sbjct: 1084 AWRTTHFDFHSIHD-NILKLDILGHDDPTMIRMLQDL-----SGIDPKTIPTDDPGVMAL 1137

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
             +    LG+   E         G+       +  ++    P     ++  +   +G +  
Sbjct: 1138 FSGTDILGVTPEEIQSST-GTLGVPEFGTRFVRGMLEETHPKTFAELLKISGLSHGTDVW 1196

Query: 672  V-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDK 727
            + +   LI         VI  ++ +M     +      +    + +R+            
Sbjct: 1197 LGNAEELIKNGTVTMPDVIGCRDDIMMDLIHMGVESDKAFKIMEHVRKG----------- 1245

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
               R I    +  +        +        Y F K+HAAAY +++ + A+ K +YP+ +
Sbjct: 1246 ---RGIPDEWQADMRAADVPEWYIGACLKIKYMFPKAHAAAYVLMALRIAYFKVYYPLVY 1302

Query: 788  LAASMTLEMDNVE---------------------------------KIKKFCQDARQFNI 814
             AA  ++  D+ +                                  + +   +  +   
Sbjct: 1303 YAAYFSVRADDFDLVSMSRGKEAVKNAMELINSKGNEATTKEKNLLTVLEIANEMLERGF 1362

Query: 815  QIMPPSVNTPCVDFKVGDNRIY---YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                  +N                     AI G+G   A+ I+ A  ++ F S ED   R
Sbjct: 1363 DFSMVDINKSDAQNWTIQEDGRTLLAPFTAIPGLGLNVAKQIVAAREEQEFISKEDLSKR 1422

Query: 872  VDSKKLNRRVL-ESLVFAGALDC 893
                +     + E+ V     D 
Sbjct: 1423 GKVSQSLIDFMTENHVLDDLPDE 1445



 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S+++   S+   + K A     AIAITD   L +  E         ++ + 
Sbjct: 347 VELHLHSNMSMMDATNSITEYVSKAAEWGHKAIAITDHGTLQAFPEAHAAGQKNNVKILY 406

Query: 72  GC 73
           G 
Sbjct: 407 GV 408


>gi|225568406|ref|ZP_03777431.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM 15053]
 gi|225162634|gb|EEG75253.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM 15053]
          Length = 1487

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 179/959 (18%), Positives = 334/959 (34%), Gaps = 189/959 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            + F       GI  +               +N           +++L     G   L +L
Sbjct: 604  VRFVDMLKERGIHTLARLNQ-------FGSSNANAIRKLPSFHVIILAKNETGRVNLYKL 656

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL---- 171
            +S+ +L D   +  RI  S L     EGLI+ +   +G + +A   + SQ    R+    
Sbjct: 657  ISKSHL-DYFGRQPRIPKSELSR-HREGLIVGSACEAGELYQAILDDKSQERIARIVNFY 714

Query: 172  --LTFKKLFGDRLYVNLQR----HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEED 224
              L  + L  ++  +  +R    H   D +     +V+L      P+VAT +  F+  ED
Sbjct: 715  DYLEIQPLGNNKFMIASERISKIHSEEDLKNVNRTIVKLGEKFRKPVVATCDVHFMDPED 774

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI--ARRCS 282
                 ++MA    T   +          YL+   EM++ F  L  A    V I    + +
Sbjct: 775  EVYRRIIMAGKGFTDADE------QAPLYLRTTDEMLAEFEYLGSAKAREVVIDNPNKIA 828

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
              ++  +P+ P     +C  +  + +  LR+                     +   +RL+
Sbjct: 829  DSVERISPVRP----DKCPPVIPDSDQMLRDICYNKARSMYGDEL------PEVVTERLE 878

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             ELN I    F+  ++I    +  + ++   VG  RGS   S  A    IT+++PL    
Sbjct: 879  RELNSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFVATMAGITEVNPLSPHY 937

Query: 400  ------------------------------------------FSLLFERFLNPDRMSMPD 417
                                                      F + FE FL       PD
Sbjct: 938  YCRSCHYSDFDSGDVRAYAGGCGWDMPDKVCPVCGEKLVKDGFDIPFETFLGFKGNKEPD 997

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  D +    +Y +  +G  +  +  T G+L  K A   V                
Sbjct: 998  IDLNFSGDYQSNAHKYTEVIFGDGQTFRAGTIGTLADKTAFGYVKNYF------------ 1045

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD- 536
                                 R  R  +  +DR++   Q   G+ R    H  GI++   
Sbjct: 1046 -------------------EERGQRKRNCEIDRIV---QGCTGIRRSTGQHPGGIIVLPL 1083

Query: 537  -RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--- 589
               ++   P+         D+  T F+   I+   L+K D LG    T+++   +F+   
Sbjct: 1084 GEDINSFTPVQHPANDMTTDIVTTHFDYHSIDH-NLLKLDILGHDDPTMIKTLEEFISSP 1142

Query: 590  ------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
                   +   + D + IP DD     L      LGI   +  G      G+     E +
Sbjct: 1143 AMENEYNETDNRFDATKIPLDDRGVMSLFHDTSALGIKPDDIGGCPVGCLGIPEFGTEFV 1202

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ-- 700
            + +V   +P  + +++  +   +G +  + +   LI          I  ++ +M      
Sbjct: 1203 VQMVVDTKPQTLSDLIRISGLSHGTDVWLNNAQELIRSGKATISTAICTRDDIMTYLINK 1262

Query: 701  -LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
             + S  S +  + +R+  G              ++   +  + +    + +    K   Y
Sbjct: 1263 GMDSELSFTIMEKVRKGKG--------------LTPEFEKAMKEADVPDWYIWSCKQIKY 1308

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIKKFC---- 806
             F K+HAAAY +++Y+ A+ K +YP+ +  A   +              EK+K +     
Sbjct: 1309 MFPKAHAAAYVMMAYRIAYCKINYPLAYYGAYFGIRADAFSYELMCQGKEKLKFYIEDYK 1368

Query: 807  --------------------QDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGV 845
                                Q+      + MP  +       F++ D R+   L++I G+
Sbjct: 1369 RRSDSLSKKEQDTMKDMRIVQEMYARGYEFMPLDIYKAKASKFQIVDGRLMPPLSSIDGM 1428

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQ 903
            G   A  + EA+ D P+ S +DF  R    K+++ V++ +   G   D    +++ L  
Sbjct: 1429 GDKAAEAVEEAAKDGPYLSRDDFRQRT---KVSKTVIDYMADMGLFGDIPESNQLSLFD 1484



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
           V L  HS  S ++G   + +++ +       AIAITD   + +  + 
Sbjct: 359 VELHCHSKMSDMDGVTEVKDLVKRAHDWGHKAIAITDHGVVQAFPDA 405


>gi|295696154|ref|YP_003589392.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
 gi|295411756|gb|ADG06248.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
          Length = 1428

 Score =  429 bits (1104), Expect = e-117,   Method: Composition-based stats.
 Identities = 170/929 (18%), Positives = 318/929 (34%), Gaps = 173/929 (18%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F      A  +          + + + +++             +LV    G + L  LVS
Sbjct: 572  FLHLLREAEARGAHHLDECNALGEGIDVSH------ARPYHATILVKNPTGLKNLYRLVS 625

Query: 118  RMYLLDQGKQSVRICL-SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL---- 172
              +      +  RI    WL     EGL+M TG   G + +A     S      ++    
Sbjct: 626  LAHTR-YLHRQPRIPRTEWLN--YREGLMMGTGCLRGELFQALLRGRSDEELLDIIQRYD 682

Query: 173  --TFKKLFGDRLYVNLQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
                + L   R  +  +  R  +       ++++LA     P+VAT +  +L  ED    
Sbjct: 683  FVEIQPLDQYRPLLRNEEIRDLEAVAEYHRRILELADRAGRPVVATGDVHYLDPEDRIYR 742

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQV 287
            D+L A   +  V   D       ++ +   EM++ F  L P A+E  VE A R +  ++V
Sbjct: 743  DILQA-GSNMEVDDPD-----AGYHFRTTEEMLAAFGHLGPRAVEVVVENANRIAEEIEV 796

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              PI         D      E ++R+ A      RL    +      +  + RL+ ELN 
Sbjct: 797  VKPIPDELYTPVIDGA----EEQIRSLAYEKA-RRLYGDPL-----PELVKARLEKELNS 846

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------- 399
            I    ++  +LI    +  + K+   VG  RGS   S+ A    IT+++PL         
Sbjct: 847  IINHGYAVIYLIAHKLVTQSLKDGYLVG-SRGSVGSSLVATMTDITEVNPLPPHYLCPAC 905

Query: 400  ---------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDR 426
                                               + FE F+      +PD D++F  + 
Sbjct: 906  HYSEFVTAGSVGSGFDLPDRECPRCGEKLGKDGHDIPFETFMGFKGDKVPDIDLNFSGEY 965

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +    +Y ++ +G + V +  T  ++  K A   V +                       
Sbjct: 966  QSRAHKYTEHLFGSDHVFRAGTISTVAEKTAYGYVRKF---------------------- 1003

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVP 544
                     +  R  +L +  + RL+   Q   G+ R    H  G+++   ++ +    P
Sbjct: 1004 ---------AEERGLQLRNAELTRLV---QGCTGIKRTTGQHPGGLMVVPSNKEIFDFCP 1051

Query: 545  MY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            +     D  +    T F+   I    L+K D LG    T+++   D        V    I
Sbjct: 1052 IQFPADDKTAGTRTTHFDYHSIHD-NLLKLDLLGHDDPTVIRMLQDLTG-----VAPKEI 1105

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD +T  + +    LG+   +         G+     + +  ++   +P     +V  
Sbjct: 1106 PVDDPDTMSIFSGTEVLGVTPEQIRS-TVGTYGIPEFGTKFVRQMLEDTKPKTFAELVRI 1164

Query: 662  NNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   +G +  ++    LI         VI  ++ +M +  +  G    +A  +  ++ K 
Sbjct: 1165 SGLSHGTDVWLNNAQDLIRSGTARLSEVISTRDDIM-VYLIQKGMEPVQAFRIMESVRKG 1223

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                 + +            + +    + +    K   Y F K+HA AY +++ + A+ K
Sbjct: 1224 KGLTPEDEAT----------MKEHGVPDWYIASCKKIKYMFPKAHATAYVLMAVRIAYFK 1273

Query: 781  THYPVEFLAASMTLEMDNVE---------------------------KIKKFCQ------ 807
             H P+ F A   T+  D+ +                           K K          
Sbjct: 1274 VHNPLAFYATYFTVRADDFDLQLVLQGPDVVLRRIEAVEAKGSQATAKEKSLLTVLEVAL 1333

Query: 808  DARQFNIQIMPPSVNTP-CVDF-KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
            +  Q   +  P  +       F   G+  +    +A+ G+G + AR++  A  +  F S+
Sbjct: 1334 EMMQRGFRFGPLDLYRSDATRFVPDGEGTLIPPFSAVAGIGESAARNVAAAREEGEFLSV 1393

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +D   R    +    +LE     G L   
Sbjct: 1394 QDLQERARLSRPVVELLE---QMGCLKGL 1419



 Score = 91.6 bits (226), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 43/94 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH+  S L+G  S  +++ + A     A+A+TD     +  +F ++A  AGI+PI+
Sbjct: 330 VELHVHTPMSALDGVSSPGDLVRRAAEWGHSALAVTDHGVAQAFPDFFREAQKAGIKPIL 389

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G +  +    +  +      P      +V    T
Sbjct: 390 GIEAYLVDDGSSVVFGADHRPLEDAEFVVFDTET 423


>gi|160880751|ref|YP_001559719.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans ISDg]
 gi|160429417|gb|ABX42980.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans ISDg]
          Length = 1527

 Score =  429 bits (1103), Expect = e-117,   Method: Composition-based stats.
 Identities = 164/942 (17%), Positives = 314/942 (33%), Gaps = 186/942 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            L+F +     GI+ +          +  +               ++L     G   L  +
Sbjct: 653  LKFLEMLRERGIETLAQI-------NRAEEVTPDVIKKMPTYHAIILCQNDIGRVNLYRM 705

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  ++ +  ++  RI  S L +   EGL++ +   +G + +A   NSS+    RL  F 
Sbjct: 706  VSYSHI-NYFQRRPRIPKSVLMK-HREGLLIGSACEAGELYQAILRNSSEGEIVRLANFY 763

Query: 176  KLFGDRLYVNLQRHRGYDR----------YRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
              +  +   N Q     ++              +++ L   +  P+VAT +  FL+ ED 
Sbjct: 764  DYYEIQPLGNNQFMIESEKIDISSEEELKEINRKIIALGEEYNKPVVATCDVHFLNPEDE 823

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSF 283
                ++MA    +              Y +   EM+  FS L +     V I    +   
Sbjct: 824  VYRRIIMAAKGFSDADN------QAPLYFRTTEEMLEEFSYLGKEKAEEVVITNTNKVCD 877

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            +++  +P+ P       +D  K     LR+                     +    RL+ 
Sbjct: 878  MIEKISPVRPDKCAPVIEDSDKT----LRDICYEKAHSMYGPDL------PKIVADRLEH 927

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            EL  I    F+  ++I    +  + ++   VG  RGS   S  A    IT+++PL     
Sbjct: 928  ELKSIINNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFAATMSGITEVNPLPAHYY 986

Query: 400  -----------------------------------------FSLLFERFLNPDRMSMPDF 418
                                                      ++ FE FL  +    PD 
Sbjct: 987  CPNCHFSDFESEEVKAFGSSSGCDMPDRDCPVCGQPLAKDGHNIPFETFLGFNGDKEPDI 1046

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + + +   Y +  +G  +  +  T G+L  K A     +               
Sbjct: 1047 DLNFSGEYQSKAHDYTEVIFGKGQTFRAGTIGTLADKTAFGYAKKYY------------- 1093

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD-- 536
                                 E +     V  +  I +   G+ R    H  GI++    
Sbjct: 1094 ---------------------EEKSVHKRVAEINRIVEGCVGVRRTTGQHPGGIIVLPLG 1132

Query: 537  RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
              +    P+ R           T F+   I+   L+K D LG    T+++   D      
Sbjct: 1133 EEIYSFTPVQRPANDMTTKTVTTHFDYHSIDH-NLLKLDILGHDDPTMIRMLEDLTG--- 1188

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              +D   I  DD +   L  +  +LGI   +  G      G+     + ++ ++   +P 
Sbjct: 1189 --IDAKTIRMDDQKVISLFKSTESLGIRPEDIGGCDLGSLGLPELGTDFVMQMLRDTKPQ 1246

Query: 654  PIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSE 709
               +++  +   +G +  ++    LI          I  ++ +M       + +G +   
Sbjct: 1247 SFSDMIRISGLSHGTDVWLNNTQTLISEGKCTLSTAICTRDDIMTYLISEGVENGLAFKI 1306

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             + +R+   K +  EM++           NG+        +    K   Y F K+HA AY
Sbjct: 1307 MESVRKG--KGLTPEMEEA-------MVANGVPD-----WYIWSCKRIKYMFPKAHACAY 1352

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLE---------------------------------- 795
             +++++ A+ K +YP+ +  A  ++                                   
Sbjct: 1353 VMMAFRIAYFKVYYPLAYYTAYFSIRATAFNYELMCLGRERLDYHMAEYKRRMGSNDPAQ 1412

Query: 796  -----MDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGVGTTT 849
                  ++  K  K  Q+        +P  V T     F++ D ++  +L+ I G+G   
Sbjct: 1413 KLTKKEEDTLKDMKVVQEMYARGFDFLPIDVYTAKAHHFQIIDGKLMPALSTIDGLGDKA 1472

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A  ++EA  D  F S +DF +R         ++  L   G L
Sbjct: 1473 ADQVVEAVKDGKFLSRDDFKTRCKISGTVVDLMGDLGLLGDL 1514



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           V L  H+  S ++  +    ++         A+AITD   + +  E S  
Sbjct: 399 VELHAHTMMSDMDAVVDPQALVKTAFEWGHKAVAITDHGVVQAFPEASHA 448


>gi|295094742|emb|CBK83833.1| DNA polymerase III catalytic subunit, PolC type [Coprococcus sp.
            ART55/1]
          Length = 1603

 Score =  429 bits (1103), Expect = e-117,   Method: Composition-based stats.
 Identities = 166/919 (18%), Positives = 327/919 (35%), Gaps = 157/919 (17%)

Query: 83   LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
            L  T+            ++L     G   L  L+S  +L     +  R+ +S + +   E
Sbjct: 723  LGSTSPDAIKKDKTYHGIILAKNEIGRVNLYRLISESHLT-YFARRPRMPMSLINKY-RE 780

Query: 143  GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY------- 195
            GLI+ +   +G +  A   ++S     RL+ +        Y+ +Q     +         
Sbjct: 781  GLIIGSACEAGELFCAIVDDASDEEIVRLVNWFD------YLEIQPLGNNEFMTRDTRNP 834

Query: 196  --------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                       ++V+L      P+VAT +  FL  EDY    ++M           D   
Sbjct: 835  KTMDDLIGYNKRIVELGEMFNKPVVATCDVHFLDPEDYIYRAIIMKSKGF------DDAD 888

Query: 248  VTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            + P  Y +   EM++ F  L   +A E  +      + +++   P+ P         I +
Sbjct: 889  MQPPLYFRTTEEMLAEFQYLGSDKAKEVVITNTNMIADMIERIEPVRPDKAPP----IIE 944

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L +                        ++RLD EL+ I    F+  ++I    + 
Sbjct: 945  NSDQTLTDICYTKAHEIYGPDL------PPQVQERLDRELHSIISNGFAVMYIIAQKLVW 998

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------------- 399
             +  +   VG  RGS   S  A    IT+++PL                           
Sbjct: 999  DSNDHGYLVG-SRGSVGSSFVATMAGITEVNPLSAHYICPKCHFVDFDSELVKSYSGMSG 1057

Query: 400  -------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  +    PD D++F  + + +   Y +  +G 
Sbjct: 1058 CDMPDRDCPNCGTPLIKEGHDIPFETFLGFNGDKEPDIDLNFSGEYQSKAHAYTEVLFGK 1117

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
             +  +  T G +  K A   V    +  +S+ + + +   +      + +   +++   +
Sbjct: 1118 GKAFKAGTVGGVAEKTAFGYVYNYFK-DHSKEELMAEAKASGMDEKSAKKYAEENATVTK 1176

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPV 555
             R           ++    G+ R    H  G+++  R   +    P+     DV SD+  
Sbjct: 1177 RRCEMER------LALGCTGVRRTTGQHPGGMIVLPRHEEIYSFTPIQHPANDVTSDIIT 1230

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            + F    I+   L+K D LG    T++++  D       K+ L     DD +   L  + 
Sbjct: 1231 SHFEYHSIDH-NLLKLDILGHDDPTMIRRLEDLTGLDATKIRL-----DDKDVMELFHST 1284

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
             +LGI   + +G+     G+     +  + ++   +P    ++V      +G +  + + 
Sbjct: 1285 KSLGITPEDINGIPLGSLGVPEFGTDFAMQMLIDAKPTCFSDLVRIAGLAHGTDVWLGNA 1344

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIK-EEMDKQKE 730
              LI          I  ++ +M       L +G + +  + +R+ +  K K ++ D  K 
Sbjct: 1345 QELIKSGKCTISTAICCRDDIMVYLIHMGLDAGLAFNIMEKVRKGIVAKGKCDKWDDWKA 1404

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                  + +G+        +    +   Y F K+HAAAY +++++ AW K +YP+E+  A
Sbjct: 1405 E----MAAHGVPD-----WYVWSCQKIKYMFPKAHAAAYVMMAWRIAWFKVNYPLEYYTA 1455

Query: 791  SMTLEMDNVE----------------------------------KIKKFCQDARQFNIQI 816
              ++  D+                                    K  K   +        
Sbjct: 1456 FFSIRADDFSYEMMCFGKERVLFHINEISKVDKNKRSAKDEGKLKDLKIVLEMYARGYDF 1515

Query: 817  MPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            +P  +     D F++ D +I  S A+I+G+G   A+ + +A+   PF S E+   R    
Sbjct: 1516 VPIDIYKAKADRFQIIDGKIMPSFASIEGMGEKAAQQLYDAAQKGPFLSKEEINERA--- 1572

Query: 876  KLNRRVLESLVFAGALDCF 894
            K+ +  +E +   G LD  
Sbjct: 1573 KIGKGTIEKMSELGILDGM 1591



 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           V L +H+  S ++  + +  I+ + +    PAIAITD   +
Sbjct: 461 VELHMHTKMSEMDSVVDIETIVKRASDWGHPAIAITDHGVV 501


>gi|300214373|gb|ADJ78789.1| DNA polymerase III polC-type (PolIII) [Lactobacillus salivarius CECT
            5713]
          Length = 1444

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 158/923 (17%), Positives = 303/923 (32%), Gaps = 166/923 (17%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++     Q+      N  +              ++L  T EG + L +L S   ++    
Sbjct: 586  LKDAEEKQILYHDDFNKHIGENDAYKHEHPSHAIILAKTQEGLKNLFKLTSES-MVKYFY 644

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLFG 179
            +  R+  S L++   EGLI+ +  + G +  A       +A+++   +       K L+ 
Sbjct: 645  RVPRVPRSILEKY-REGLIVGSACADGEVFTAMMQKGYTIAKQKAEFYDYLEVQPKPLYE 703

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              L   L +         + +V+LA+  + P+VAT +  F+++ED     +L+       
Sbjct: 704  PLLEQELVKDNDNLEEIITNMVKLAHELDKPIVATGDVHFMNKEDAIYRKILIHSQAGA- 762

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +  +R +  PD + +   EM+  FS L E  A E  V    +    +    P+  +   
Sbjct: 763  -NPLNRLKKLPDVHFRTTDEMLEEFSFLGEDIAKEIVVTNPNKLVDEISEITPVKDKLYT 821

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +  +++  +   N+A A     L           +  ++RLD EL  +    FS  +
Sbjct: 822  PKMEGAEQDIHDLTMNRAHAWYGDTL----------PEIVQKRLDKELKSVIGNGFSVIY 871

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    +  + K+   VG  RGS   S+ A    IT+++PL                   
Sbjct: 872  LISQKLVYKSNKDGYLVG-SRGSVGSSLVATMTGITEVNPLPPHYRCPKCKWTHFYEKGE 930

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  D +     Y + 
Sbjct: 931  YGSGYDLPDKDCPNCGTELIKDGQDIPFETFLGFKGNKVPDIDLNFSGDYQPIAHNYTKV 990

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G   V +  T G++  K A   V                            +A   D+
Sbjct: 991  LFGENNVYRAGTIGTVADKTAYGYV----------------------------KAYERDT 1022

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +     +  +++   G+ R    H AGI++      +    P+         
Sbjct: 1023 E------QNFRGAEIDRLAKGATGVKRTTGQHPAGILVVPDYMDIYDFTPIQYPADDLTA 1076

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
                T F+   I    ++K D LG    T+++   D        +D   IP DD     L
Sbjct: 1077 AWRTTHFDFHSIHD-NILKLDILGHDDPTMIRMLQDL-----SGIDPKTIPTDDPGVMAL 1130

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
             +    LG+   E         G+       +  ++    P     ++  +   +G +  
Sbjct: 1131 FSGTDILGVTPEEIQSST-GTLGVPEFGTRFVRGMLEETHPKTFAELLKISGLSHGTDVW 1189

Query: 672  V-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDK 727
            + +   LI         VI  ++ +M     +      +    + +R+            
Sbjct: 1190 LGNAEELIKNGTVTMPDVIGCRDDIMMDLIHMGVESDKAFKIMEHVRKG----------- 1238

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
               R I    +  +        +        Y F K+HAAAY +++ + A+ K +YP+ +
Sbjct: 1239 ---RGIPDEWQADMRAADVPEWYIGACLKIKYMFPKAHAAAYVLMALRIAYFKVYYPLVY 1295

Query: 788  LAASMTLEMDNVE---------------------------------KIKKFCQDARQFNI 814
             AA  ++  D+ +                                  + +   +  +   
Sbjct: 1296 YAAYFSVRADDFDLVSMSRGKEAVKNAMELINSKGNEATTKEKNLLTVLEIANEMLERGF 1355

Query: 815  QIMPPSVNTPCVDFKVGDNRIY---YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                  +N                     AI G+G   A+ I+ A  ++ F S ED   R
Sbjct: 1356 DFSMVDINKSDAQNWTIQEDGRTLLAPFTAIPGLGLNVAKQIVAAREEQEFISKEDLSKR 1415

Query: 872  VDSKKLNRRVL-ESLVFAGALDC 893
                +     + E+ V     D 
Sbjct: 1416 GKVSQSLIDFMTENHVLDDLPDE 1438



 Score = 80.4 bits (197), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S+++   S+   + K A     AIAITD   L +  E         ++ + 
Sbjct: 340 VELHLHSNMSMMDATNSITEYVSKAAEWGHKAIAITDHGTLQAFPEAHAAGQKNNVKILY 399

Query: 72  GC 73
           G 
Sbjct: 400 GV 401


>gi|315038577|ref|YP_004032145.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
 gi|312276710|gb|ADQ59350.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
          Length = 1435

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 172/883 (19%), Positives = 304/883 (34%), Gaps = 140/883 (15%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L    +G + L +LVS     D   +  R   S L ++  EGL+  +G   
Sbjct: 605  RARPSHMTVLAKDQKGLKNLYKLVSIASTKD-FYRIPRTPKSDLADLH-EGLLYGSGCWQ 662

Query: 153  GPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHR---GYDRYRE--SQVVQLAY 205
            G +  A        A ++   +   ++     Y  L         D+  E  S + +L  
Sbjct: 663  GDVFVAMMQKGYDEAREKAKFYDFLEVQPPATYSQLIADGLIKDEDQLEEIISNIYKLGK 722

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                P+VAT +S ++   D     +L++       S  +R +  PD +  +  EM+  FS
Sbjct: 723  ELNKPVVATGDSHYVEPHDAIYRTILISAQ----RSNPNRNKPQPDLHFYSTQEMLDAFS 778

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
             L E       +ENT +IA   S I  +   + P  I           + E++       
Sbjct: 779  FLGEDIAKEIVIENTNKIADEISEIQPIKDGLYPPHIAH--------ADEEMKKLTYDKA 830

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                           +  + R+D ELN I    ++  +LI    +  + K+   VG  RG
Sbjct: 831  YELYGN------PLPKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRG 883

Query: 380  SGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFCQ-----D 425
            S   S+ A    IT+++PL         ++S  FE         +PD +   C      D
Sbjct: 884  SVGSSLVATMSGITEVNPLAPHYRCPKCKYSQFFENGEYGSGFDLPDKNCPKCGTPLVKD 943

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +D         +G ++V  I    S   +    +  R +        R    I      
Sbjct: 944  GQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM-FGPDNSYR-AGTIATVADK 1000

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLV 543
                 A      F E R        L  ++  + G+ R    H AGIV+      +    
Sbjct: 1001 T----AYGYAKHFDEERNLKLRNAELDRLASGIRGVKRTTGQHPAGIVVVPDDMDIYDFT 1056

Query: 544  PM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+     DV +   +T ++   I    ++KFD LG    T+++   D        +D   
Sbjct: 1057 PVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDPTMIRHLQDL-----SGIDPLT 1110

Query: 601  IPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            IP DD     L ++               GTLG+ +  +  +R  LE  +P    +++ +
Sbjct: 1111 IPPDDPGVMSLFSSTKALGVTPEQIGSQTGTLGVPEFGTRFVRGMLEETKPTTFAELLQI 1170

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
              L     +      +   NG  K+  +    D ++ +     +  E           +S
Sbjct: 1171 SGLSHGTDVWLGNAEDLVNNGTCKLKDVIGCRDNIMMDLIHWGVKPEVA---------FS 1221

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
              E+    R +  +    + K K+          I      +  ++      Y F K+HA
Sbjct: 1222 TMESVRHGRGISDENMAVLKKNKK----------IPDWYIPSCLKI-----KYMFPKAHA 1266

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK----------------------- 803
             AY +++ + AW K +YP  +  A  ++  D  + +                        
Sbjct: 1267 TAYILMALRIAWFKVYYPEIYYTAYFSVRADLFDLVAMSHGKNTVKAAMKEIQDKGMDAS 1326

Query: 804  ----------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGTTTAR 851
                      +   +  +  I+I    ++     DFK+ D         A+ G+G   A+
Sbjct: 1327 AKDKSLLTVLEIANECLERGIKIKMVDIDQSEATDFKILDKHTILAPFNAVPGLGDNAAK 1386

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLE-SLVFAGALDC 893
             I+ A A+K F S ED   R    +      E + V  G  D 
Sbjct: 1387 QIVAARAEKKFLSKEDLAKRGKVSQTIMNYFEDNGVLEGMPDE 1429



 Score = 75.0 bits (183), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%)

Query: 2   TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           T+  E     V L +H++ S L+   +  + +       Q AIAITD  ++ S  E    
Sbjct: 322 TEKYEGDQKRVELHLHTNMSQLDATNTPTDFIKTAKKFGQKAIAITDHGDVQSFPEAYST 381

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
             A G++ + G + ++     L + N     +     ++  V T
Sbjct: 382 GKATGMKILYGVEANMIDDHALLVLNPAPMTYEDREFVIFDVET 425


>gi|313638095|gb|EFS03362.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            seeligeri FSL S4-171]
          Length = 1444

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 174/948 (18%), Positives = 310/948 (32%), Gaps = 198/948 (20%)

Query: 58   FSQKACAA-GIQPIIGCQLDIDMQDNLKMTN----QGKTPFPTVPSIVLLVSTAEGYQRL 112
            F  +A A  G + I   +   D+  +  + +                 +   TA G + L
Sbjct: 575  FDAEATAYLGWKLIKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNL 634

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             +L++   + +   +  RI  S L ++  EGLI+ T  S G +  A      Q AEK   
Sbjct: 635  FKLITMSNI-NYFYRVPRIPRSQLNKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAD 692

Query: 173  TF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
             +       K ++   +   L R           +V++      P+VAT N  +    D 
Sbjct: 693  FYDFIEIQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKAGKPVVATGNVHYKDPVDK 752

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSF 283
                +L+        +        PD + ++  EM+  F+ L E  A E  V  +     
Sbjct: 753  IYRKILIYSQGG---ANPLNRAELPDVHFRSTDEMLKEFAFLGEEKAKEVVVTNSNLVVD 809

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
             ++   PI       + D      E+E+RN + +       +         +    RL+ 
Sbjct: 810  WIEDLKPIKDELYTPKIDGA----EDEVRNMSYSMAHQLYGE------TLPEIVEARLEK 859

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL  I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL    L
Sbjct: 860  ELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYL 918

Query: 404  -----------------------------------------FERFLNPDRMSMPDFDIDF 422
                                                     FE FL      +PD D++F
Sbjct: 919  CPNCKHSEFFDDGSIGSGFDLPDKDCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNF 978

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D +     Y +  +G + V +  T G++  K A   V                     
Sbjct: 979  SGDYQPVAHAYTKEIFGEDYVFRAGTIGTVAEKTAFGYVRNY------------------ 1020

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLS 540
                          R     +    +DRL+       G+ R    H  GI++      + 
Sbjct: 1021 -------------EREMNMTIRGAEIDRLVA---GCTGVKRTTGQHPGGIIVIPDYMDVY 1064

Query: 541  QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+        S+   T F+   I    ++K D LG    T ++   D        +D
Sbjct: 1065 DFTPVQFPADATDSEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDL-----SGID 1118

Query: 598  LSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
               IP DD +   L               +  GTLGI +  +  +RQ LE  +P    ++
Sbjct: 1119 PKTIPTDDPDVMKLFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSEL 1178

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQ 700
            + +  L     +                 +   LI     E   VI  ++ +M       
Sbjct: 1179 VQISGLSHGTDVWLG--------------NAEELIKNKTCELPDVIGCRDDIMVFLIYQG 1224

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            L S  +    + +R+   K + EEM++             +        +    K   Y 
Sbjct: 1225 LESSLAFKIMESVRKG--KGLTEEMEEA------------MMANKVPLWYIESCKKIKYM 1270

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------- 800
            F K+HAAAY +++ + A+ K H+P+ F A   T+  D+ +                    
Sbjct: 1271 FPKAHAAAYVLMAVRIAYFKVHHPLFFYATYFTVRADDFDLTSMVNGKEAVKATMKEVND 1330

Query: 801  -------------KIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVG 846
                          + +   +               +   +F +  + +     AI  +G
Sbjct: 1331 KGMEASTKEKNLLTVLEIANEMLARGFHFQKVDLYKSSADEFIIDGDSLIPPFNAIPSLG 1390

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            T  A+ I+ A  +  F S ED        K+++ +++ +   G L+  
Sbjct: 1391 TNVAKQIVAARENGEFLSKEDXXX---XGKVSKTIIQYMDDQGCLEGL 1435



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401


>gi|301300283|ref|ZP_07206492.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            salivarius ACS-116-V-Col5a]
 gi|300852124|gb|EFK79799.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            salivarius ACS-116-V-Col5a]
          Length = 1444

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 158/923 (17%), Positives = 303/923 (32%), Gaps = 166/923 (17%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++     Q+      N  +              ++L  T EG + L +L S   ++    
Sbjct: 586  LKDAEEKQILYHDDFNKHVGENDAYKHEHPSHAIILAKTQEGLKNLFKLTSES-MVKYFY 644

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLFG 179
            +  R+  S L++   EGLI+ +  + G +  A       +A+++   +       K L+ 
Sbjct: 645  RVPRVPRSILEKY-REGLIVGSACADGEVFTAMMQKGYTIAKQKAEFYDYLEVQPKPLYE 703

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              L   L +         + +V+LA+  + P+VAT +  F+++ED     +L+       
Sbjct: 704  PLLEQELVKDNDNLEEIITNMVKLAHELDKPIVATGDVHFMNKEDAIYRKILIHSQAGA- 762

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +  +R +  PD + +   EM+  FS L E  A E  V    +    +    P+  +   
Sbjct: 763  -NPLNRLKKLPDAHFRTTDEMLEEFSFLGEDIAKEIVVTNPNKLVDEISEITPVKDKLYT 821

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +  +++  +   N+A A     L           +  ++RLD EL  +    FS  +
Sbjct: 822  PKMEGAEQDIHDLTMNRAHAWYGDTL----------PEIVQKRLDKELKSVIGNGFSVIY 871

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    +  + K+   VG  RGS   S+ A    IT+++PL                   
Sbjct: 872  LISQKLVYKSNKDGYLVG-SRGSVGSSLVATMTGITEVNPLPPHYRCPKCKWTHFYEKGE 930

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  D +     Y + 
Sbjct: 931  YGSGYDLPDKDCPNCGTELIKDGQDIPFETFLGFKGNKVPDIDLNFSGDYQPIAHNYTKV 990

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G   V +  T G++  K A   V                            +A   D+
Sbjct: 991  LFGENNVYRAGTIGTVADKTAYGYV----------------------------KAYERDT 1022

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +     +  +++   G+ R    H AGI++      +    P+         
Sbjct: 1023 E------QNFRGAEIDRLAKGATGVKRTTGQHPAGILVVPDYMDIYDFTPIQYPADDLTA 1076

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
                T F+   I    ++K D LG    T+++   D        +D   IP DD     L
Sbjct: 1077 AWRTTHFDFHSIHD-NILKLDILGHDDPTMIRMLQDL-----SGIDPKTIPTDDPGVMAL 1130

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
             +    LG+   E         G+       +  ++    P     ++  +   +G +  
Sbjct: 1131 FSGTDILGVTPEEIQSST-GTLGVPEFGTRFVRGMLEETHPKTFAELLKISGLSHGTDVW 1189

Query: 672  V-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDK 727
            + +   LI         VI  ++ +M     +      +    + +R+            
Sbjct: 1190 LGNAEELIKNGTVTMPDVIGCRDDIMMDLIHMGVESDKAFKIMEHVRKG----------- 1238

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
               R I    +  +        +        Y F K+HAAAY +++ + A+ K +YP+ +
Sbjct: 1239 ---RGIPDEWQADMRAADVPEWYIGACLKIKYMFPKAHAAAYVLMALRIAYFKVYYPLVY 1295

Query: 788  LAASMTLEMDNVE---------------------------------KIKKFCQDARQFNI 814
             AA  ++  D+ +                                  + +   +  +   
Sbjct: 1296 YAAYFSVRADDFDLASMSRGKEAVKNAMELINSKGNEATTKEKNLLTVLEIANEMLERGF 1355

Query: 815  QIMPPSVNTPCVDFKVGDNRIY---YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                  +N                     AI G+G   A+ I+ A  ++ F S ED   R
Sbjct: 1356 DFSMVDINKSDAQNWTIQEDGRTLLAPFTAIPGLGLNVAKQIVAAREEQEFISKEDLSKR 1415

Query: 872  VDSKKLNRRVL-ESLVFAGALDC 893
                +     + E+ V     D 
Sbjct: 1416 GKVSQSLIDFMTENHVLDDLPDE 1438



 Score = 80.4 bits (197), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S+++   S+   + K A     AIAITD   L +  E         ++ + 
Sbjct: 340 VELHLHSNMSMMDATNSITEYVSKAAEWGHKAIAITDHGTLQAFPEAHAAGQKNNVKILY 399

Query: 72  GC 73
           G 
Sbjct: 400 GV 401


>gi|325957051|ref|YP_004292463.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC]
 gi|325333616|gb|ADZ07524.1| DNA polymerase III, alpha subunit [Lactobacillus acidophilus 30SC]
 gi|327183774|gb|AEA32221.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL 1118]
          Length = 1435

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 172/883 (19%), Positives = 304/883 (34%), Gaps = 140/883 (15%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L    +G + L +LVS     D   +  R   S L ++  EGL+  +G   
Sbjct: 605  RARPSHMTVLAKDQKGLKNLYKLVSIASTKD-FYRIPRTPKSDLADLH-EGLLYGSGCWQ 662

Query: 153  GPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHR---GYDRYRE--SQVVQLAY 205
            G +  A        A ++   +   ++     Y  L         D+  E  S + +L  
Sbjct: 663  GDVFVAMMQKGYDEAREKAKFYDFLEVQPPATYSQLIADGLIKDEDQLEEIISNIYKLGK 722

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                P+VAT +S ++   D     +L++       S  +R +  PD +  +  EM+  FS
Sbjct: 723  ELNKPVVATGDSHYVEPHDAIYRTILISAQ----RSNPNRNKPQPDLHFYSTQEMLDAFS 778

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
             L E       +ENT +IA   S I  +   + P  I           + E++       
Sbjct: 779  FLGEDIAKEIVIENTNKIADEISEIQPIKDGLYPPHIAH--------ADEEMKKLTYDKA 830

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                           +  + R+D ELN I    ++  +LI    +  + K+   VG  RG
Sbjct: 831  YELYGN------PLPKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRG 883

Query: 380  SGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFCQ-----D 425
            S   S+ A    IT+++PL         ++S  FE         +PD +   C      D
Sbjct: 884  SVGSSLVATMSGITEVNPLAPHYRCPKCKYSQFFENGEYGSGFDLPDKNCPKCGTPLVKD 943

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +D         +G ++V  I    S   +    +  R +        R    I      
Sbjct: 944  GQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM-FGPDNSYR-AGTIATVADK 1000

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLV 543
                 A      F E R        L  ++  + G+ R    H AGIV+      +    
Sbjct: 1001 T----AYGYAKHFDEERNLKLRNAELDRLASGIRGVKRTTGQHPAGIVVVPDDMDIYDFT 1056

Query: 544  PM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+     DV +   +T ++   I    ++KFD LG    T+++   D        +D   
Sbjct: 1057 PVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDPTMIRHLQDL-----SGIDPLT 1110

Query: 601  IPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            IP DD     L ++               GTLG+ +  +  +R  LE  +P    +++ +
Sbjct: 1111 IPPDDPGVMSLFSSTKALGVTPEQIGSQTGTLGVPEFGTRFVRGMLEETKPTTFAELLQI 1170

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
              L     +      +   NG  K+  +    D ++ +     +  E           +S
Sbjct: 1171 SGLSHGTDVWLGNAEDLVNNGTCKLKDVIGCRDNIMMDLIHWGVKPEVA---------FS 1221

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
              E+    R +  +    + K K+          I      +  ++      Y F K+HA
Sbjct: 1222 TMESVRHGRGISDENMAVLKKNKK----------IPDWYIPSCLKI-----KYMFPKAHA 1266

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK----------------------- 803
             AY +++ + AW K +YP  +  A  ++  D  + +                        
Sbjct: 1267 TAYILMALRIAWFKVYYPEIYYTAYFSVRADLFDLVAMSHGKNTVKAAMKEIQDKGMDAS 1326

Query: 804  ----------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGTTTAR 851
                      +   +  +  I+I    ++     DFK+ D         A+ G+G   A+
Sbjct: 1327 AKDKSLLTVLEIANECLERGIKIKMVDIDQSEATDFKILDKHTILAPFNAVPGLGDNAAK 1386

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLE-SLVFAGALDC 893
             I+ A A+K F S ED   R    +      E + V  G  D 
Sbjct: 1387 QIVAARAEKKFLSKEDLAKRGKVSQTIMNYFEDNGVLEGMPDE 1429



 Score = 75.0 bits (183), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%)

Query: 2   TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           T+  E     V L +H++ S L+   +  + +       Q AIAITD  ++ S  E    
Sbjct: 322 TEKYEGDQKRVELHLHTNMSQLDATNTPTDFIKTAKKFGQKAIAITDHGDVQSFPEAYST 381

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
             A G++ + G + ++     L + N     +     ++  V T
Sbjct: 382 GKATGMKILYGVEANMIDDHALLVLNPAPMTYEDREFVIFDVET 425


>gi|90961543|ref|YP_535459.1| DNA polymerase III PolC [Lactobacillus salivarius UCC118]
 gi|122449173|sp|Q1WUF9|DPO3_LACS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|90820737|gb|ABD99376.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118]
          Length = 1444

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 158/923 (17%), Positives = 303/923 (32%), Gaps = 166/923 (17%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++     Q+      N  +              ++L  T EG + L +L S   ++    
Sbjct: 586  LKDAEEKQILYHDDFNKHVGENDAYKHEHPSHAIILAKTQEGLKNLFKLTSES-MVKYFY 644

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLFG 179
            +  R+  S L++   EGLI+ +  + G +  A       +A+++   +       K L+ 
Sbjct: 645  RVPRVPRSILEKY-REGLIVGSACADGEVFTAMMQKGYTIAKQKAEFYDYLEVQPKPLYE 703

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              L   L +         + +V+LA+  + P+VAT +  F+++ED     +L+       
Sbjct: 704  PLLEQELVKDNDNLEEIITNMVKLAHELDKPIVATGDVHFMNKEDAIYRKILIHSQAGA- 762

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
             +  +R +  PD + +   EM+  FS L E  A E  V    +    +    P+  +   
Sbjct: 763  -NPLNRLKKLPDAHFRTTDEMLEEFSFLGEDIAKEIVVTNPNKLVDEISEITPVKDKLYT 821

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +  +++  +   N+A A     L           +  ++RLD EL  +    FS  +
Sbjct: 822  PKMEGAEQDIHDLTMNRAHAWYGDTL----------PEIVQKRLDKELKSVIGNGFSVIY 871

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    +  + K+   VG  RGS   S+ A    IT+++PL                   
Sbjct: 872  LISQKLVYKSNKDGYLVG-SRGSVGSSLVATMTGITEVNPLPPHYRCPKCKWTHFYEKGE 930

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  D +     Y + 
Sbjct: 931  YGSGYDLPDKDCPNCGTELIKDGQDIPFETFLGFKGNKVPDIDLNFSGDYQPIAHNYTKV 990

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G   V +  T G++  K A   V                            +A   D+
Sbjct: 991  LFGENNVYRAGTIGTVADKTAYGYV----------------------------KAYERDT 1022

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS--- 551
                    +     +  +++   G+ R    H AGI++      +    P+         
Sbjct: 1023 E------QNFRGAEIDRLAKGATGVKRTTGQHPAGILVVPDYMDIYDFTPIQYPADDLTA 1076

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
                T F+   I    ++K D LG    T+++   D        +D   IP DD     L
Sbjct: 1077 AWRTTHFDFHSIHD-NILKLDILGHDDPTMIRMLQDL-----SGIDPKTIPTDDPGVMAL 1130

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
             +    LG+   E         G+       +  ++    P     ++  +   +G +  
Sbjct: 1131 FSGTDILGVTPEEIQSST-GTLGVPEFGTRFVRGMLEETHPKTFAELLKISGLSHGTDVW 1189

Query: 672  V-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDK 727
            + +   LI         VI  ++ +M     +      +    + +R+            
Sbjct: 1190 LGNAEELIKNGTVTMPDVIGCRDDIMMDLIHMGVESDKAFKIMEHVRKG----------- 1238

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
               R I    +  +        +        Y F K+HAAAY +++ + A+ K +YP+ +
Sbjct: 1239 ---RGIPDEWQADMRAADVPEWYIGACLKIKYMFPKAHAAAYVLMALRIAYFKVYYPLVY 1295

Query: 788  LAASMTLEMDNVE---------------------------------KIKKFCQDARQFNI 814
             AA  ++  D+ +                                  + +   +  +   
Sbjct: 1296 YAAYFSVRADDFDLVSMSRGKEAVKNAMELINSKGNEATTKEKNLLTVLEIANEMLERGF 1355

Query: 815  QIMPPSVNTPCVDFKVGDNRIY---YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                  +N                     AI G+G   A+ I+ A  ++ F S ED   R
Sbjct: 1356 DFSMVDINKSDAQNWTIQEDGRTLLAPFTAIPGLGLNVAKQIVAAREEQEFISKEDLSKR 1415

Query: 872  VDSKKLNRRVL-ESLVFAGALDC 893
                +     + E+ V     D 
Sbjct: 1416 GKVSQSLIDFMTENHVLDDLPDE 1438



 Score = 80.4 bits (197), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S+++   S+   + K A     AIAITD   L +  E         ++ + 
Sbjct: 340 VELHLHSNMSMMDATNSITEYVSKAAEWGHKAIAITDHGTLQAFPEAHAAGQKNNVKILY 399

Query: 72  GC 73
           G 
Sbjct: 400 GV 401


>gi|331001986|ref|ZP_08325506.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411782|gb|EGG91187.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 1480

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 179/935 (19%), Positives = 325/935 (34%), Gaps = 178/935 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +EF ++    GI  +           +L  TN           +++L     G   L +L
Sbjct: 612  VEFIKRLKDKGISKLSEVA-------SLGETNADIVKKTKYNHVIILAKNDIGRINLYKL 664

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +S  ++ D   +  RI  S L ++  EGLI+ +    G + +A   +++     R+++F 
Sbjct: 665  ISLSHI-DYFNKRPRIPKSILAKM-REGLIIGSACEQGEVYKALLNDATDDELNRIVSFY 722

Query: 176  KLFGDRLYVNLQR---------HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
                 +   N            H   D +    ++V+L   +E P+VAT +  FL+ ED 
Sbjct: 723  DYLEIQPIANNMFLIEDEQNDIHSIEDLQEINKRIVELGNVYEKPVVATCDVHFLNPEDE 782

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSF 283
                ++                  P  YL+   EM+  F  L   +A E  V  +R  + 
Sbjct: 783  IYRRIIFYGKGYKDAD------TQPPLYLRTTREMLDEFEYLGTEKAYEVVVTNSRMIAD 836

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            +++V +P+ P     +C  + +  + +L N        +  +         +    RL  
Sbjct: 837  MVEVISPVRP----DKCPPVIENSDEDLTNACYKKAYEQYGE------VLPKIVEDRLKK 886

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            ELN I    F+  ++I    ++ + ++   VG  RGS   S  AY   IT+++PL     
Sbjct: 887  ELNSIISNGFAVMYIIAKKLVEKSNEDGYLVG-SRGSVGSSFAAYTSGITEVNPLPAHYY 945

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                    F + FE FL       PD D
Sbjct: 946  CDCKYVDFDSPEVKAFAGMAGCDMPDKICPKCGRKLKKDGFDIPFETFLGFKGDKEPDID 1005

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  + +     Y +  +G     +  T G+L  K A   V        ++  R C   
Sbjct: 1006 LNFSGEYQPNAHEYTEVIFGKGYTYRAGTVGTLANKTAYGYVKHYFD-DKNESKRKC--- 1061

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--R 537
                                           +  ++   EG+ R    H  GI++     
Sbjct: 1062 ------------------------------EINRLAVGCEGVRRTTGQHPGGIIVLPHGE 1091

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+ R           T F+   I+   L+K D LG +  T+++   D      V
Sbjct: 1092 EIYTFTPVQRPANDMTTKTITTHFDYHAIDH-NLLKLDILGHQDPTMIRMLQDLTGIDPV 1150

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP D  ET  L      LGI   +         G+     +  + ++   +P  
Sbjct: 1151 ----KDIPLDSKETMSLFQNTSALGIEPKDILDCPLGALGVPEFGTDFAMQMLIDTKPQG 1206

Query: 655  IDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEA 710
            + ++V      +G +  + +   LI       +  I  ++ +M          G S    
Sbjct: 1207 LSDLVRIAGLAHGTDVWLGNAQTLILEGKATIRTAICTRDDIMIYLIEQGLDEGESFKIM 1266

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + +R+   K + EE             +  + +    + +    K   Y F K+HAAAY 
Sbjct: 1267 ESVRKG--KGLTEEW------------EKHMEEKGVPDWYIWSCKKIKYMFPKAHAAAYV 1312

Query: 771  VISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKI------------------- 802
            +++++ A+ K  YP+ +  A  T+              +K+                   
Sbjct: 1313 MMAWRIAYCKIFYPLAYYTAYFTIRATGFNYSLMCMGKDKLEFNIAQYKKNPDTTAKYAD 1372

Query: 803  ----KKFCQDARQFNIQIMPPSV-NTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA 856
                 +  Q+      +     +       F++  D +I  SL++I+G+G T A  I+ A
Sbjct: 1373 TLRDMRIAQEMYARGFEFAKIDLFKVHPTKFQIMEDGKIMPSLSSIEGLGETAASSIVNA 1432

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +   PF S +DF SR    K    +L+SL   G L
Sbjct: 1433 TKAGPFISKDDFMSRAKVGKSTCELLDSLNLLGDL 1467



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S  +G  S ++I+++       AIAITD  N+     F++ +       II
Sbjct: 373 VELHCHTKMSDFDGVSSASDIINQAKNWGMDAIAITDHGNIQG---FTEASHVKNPPKII 429

Query: 72  G 72
            
Sbjct: 430 Y 430


>gi|323484216|ref|ZP_08089585.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
            WAL-14163]
 gi|323692098|ref|ZP_08106345.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
 gi|323402458|gb|EGA94787.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
            WAL-14163]
 gi|323503898|gb|EGB19713.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
          Length = 1511

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 166/896 (18%), Positives = 299/896 (33%), Gaps = 172/896 (19%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
               I+++     G   L  LVS   L     +  RI  S L +   EGLI+ +   +G +
Sbjct: 675  TYHIIIIAKNDVGRVNLYRLVSESNLT-YFARRPRIPKSLLSQY-REGLIIGSACEAGEL 732

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYV--NLQRHRGYDRY--RESQVVQLAY 205
             +A           +++ F      + L  +   +          +       ++V L  
Sbjct: 733  YQALLRGVPDTEIHKIVDFYDYLEIQPLGNNAFMLRDEKSPVNSEEELMDLNRRIVGLGE 792

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
             +  P+ AT +  FL  ED     ++M+                   YL+   EM+  F 
Sbjct: 793  QYNKPVCATCDVHFLDPEDEVYRRIIMSSKGFKDADD------QAPLYLRTTDEMLREFE 846

Query: 266  DLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
             L   +A E  +   R+ + + +   P+ P     +C  +    +  LR+          
Sbjct: 847  YLGSDKAEEVVITNTRKIAAMCERIEPVRP----DKCAPVIPNSDETLRSICYNKAHEMY 902

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
             +         +    RL+ ELN I    F+  ++I    +  + ++   VG  RGS   
Sbjct: 903  GENL------PKIVVDRLERELNSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSVGS 955

Query: 384  SVTAYALTITDIDPLR-------------------------------------------- 399
            S+ A    IT+++PL                                             
Sbjct: 956  SLVATMSGITEVNPLSPHYYCTNCHYYDFDSEEVRKFAGMAGCDMPDKNCPVCGEPLKKD 1015

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
             F + FE FL       PD D++F  + +     Y +  +G  +  +  T G+L  K A 
Sbjct: 1016 GFDIPFETFLGFKGDKEPDIDLNFSGEYQSRAHTYTEVIFGKGQTFRAGTIGTLADKTAY 1075

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V                            +   +D   R  R     +DR++      
Sbjct: 1076 GYV----------------------------KGYYED---RGVRKRRCEIDRIV---GGC 1101

Query: 519  EGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRSDLP---VTQFNMKWIEKAGLIKFDF 573
             G+ R    H  GI++      +    P+             T F+   I+   L+K D 
Sbjct: 1102 VGVRRTTGQHPGGIIVLPHGEEIYSFTPVQHPADDMTTRTVTTHFDYHSIDH-NLLKLDI 1160

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            LG    T+++   D   Q  V       P D  E   L      LGI   +  G +    
Sbjct: 1161 LGHDDPTMIRMLQDLTGQDPV----KDFPLDSKEVMSLFQNTSALGIEPEDIGGCKLGAL 1216

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQ 692
            G+     +  + ++   +P    ++V  +   +G +  + +   LI       Q  I  +
Sbjct: 1217 GIPEFGTDFAMQMLIDAQPKYFSDLVRISGLSHGTDVWLGNAQTLIQEGKATIQTAICTR 1276

Query: 693  EQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            + +M     +    G + +  + +R+  G K     +  KE    G            + 
Sbjct: 1277 DDIMVYLIGMGLEEGLAFTIMESVRKGKGLKD----EWIKEMTDHG----------VPDW 1322

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------E 800
            +    K   Y F K+HAAAY +++++ A+ K  YP+ + AA  ++              E
Sbjct: 1323 YIWSCKKIKYMFPKAHAAAYVMMAWRIAYCKVFYPLAYYAAFFSIRASGFSYVLMCQGRE 1382

Query: 801  KI------------------------KKFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRI 835
            K+                         +  Q+      +     +       F++ D ++
Sbjct: 1383 KLEYHLADYKKRMDTLSKKEQDTLRDMRIVQEMYARGFEFTAIDIFKASARSFQIVDGKL 1442

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              SL++I G+G   A  I+ A+ D PF S EDF +R    K    ++  L   G L
Sbjct: 1443 MPSLSSIDGLGEKAADAIVFAAEDGPFLSREDFINRTKVTKTVCDLMGELGLLGDL 1498



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           V L  H+  S ++G   + +++ +       A+A+TD  
Sbjct: 400 VELHCHTKMSDMDGVSEVKDLIKRAKQWGMDAMAVTDHG 438


>gi|295396947|ref|ZP_06807069.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
 gi|294974800|gb|EFG50505.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
          Length = 1439

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 174/922 (18%), Positives = 314/922 (34%), Gaps = 189/922 (20%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
                + N  +              VLL     G + L +LVS   + D   +  RI  S 
Sbjct: 593  FYHDELNKDVGKGDAYKQGRPFHAVLLAKNQTGLKDLFKLVSASNI-DYYYRVPRIPRSL 651

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLFGDRLYVNLQR 188
            L     E L++ +  + G +  A        AEK+   +       K ++   +   L +
Sbjct: 652  LSS-HRENLLVGSACAGGEVFEALMQKGKVEAEKKAAFYDYLELQPKGVYKPLILDELIQ 710

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                       ++++  +   P+VAT +  +L+EED    ++L+    S      +R + 
Sbjct: 711  DEATLEKIMKDMLEIGESVNKPVVATGDVHYLNEEDKLYREILINSIKS------NRTKN 764

Query: 249  TPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             P+ + ++  EM+  F+ L E  A +  VE +   +  ++   P+  +      +  ++E
Sbjct: 765  FPEAHFRSTEEMLQEFAFLGEETAYQIVVENSNAIADSIEFVEPLKDKLYTPTIEGAEQE 824

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              +    KA       L           +    RLD EL  I    FS  +LI    ++ 
Sbjct: 825  LTDMSFEKAHEIYGKEL----------PEIVEARLDKELKSIISNGFSVIYLISQKLVKK 874

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF-------------------------- 400
            +  +   VG  RGS   S  A    IT+++PL                            
Sbjct: 875  SNDDGYIVG-SRGSVGSSFVATMSGITEVNPLAPHYVCPNCHYSHFFTDGSVGSGFDLPD 933

Query: 401  ---------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL      +PD D++F  + +     Y +  +G + V +
Sbjct: 934  KPCPECGTNLDKDGQDIPFETFLGFKGDKVPDIDLNFSGEYQARAHAYTKVLFGDDHVFR 993

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V     + Y Q   L                          R  +
Sbjct: 994  AGTIGTVADKTAFGYV-----LGYDQDKNL------------------------NLRKTE 1024

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNM 560
                    +++   G+ R    H  GI++      +    P+     DV S+   T F+ 
Sbjct: 1025 KEF-----LAKGATGVKRTTGQHPGGIIVIPENMDVYDFTPIQFPADDVESEWKTTHFDF 1079

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-------- 612
              I    ++K D LG    T+++K  D        +D + IP DD E Y L         
Sbjct: 1080 HSIHD-NVLKLDILGHDDPTMIRKLQDL-----SGIDPTEIPIDDPEVYELFNGTEVLGV 1133

Query: 613  ------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
                  +  GTLGI +  +   RQ LE  +P    +++ +  L     +           
Sbjct: 1134 TKEQIYSNTGTLGIPEFGTRFTRQMLEATKPSTFAELLQISGLSHGTDVWLG-------- 1185

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                  +   L+         VI  ++ +M +  +  G   S+A  +     +K K   +
Sbjct: 1186 ------NAEVLVREKGLPLSEVIGCRDDIM-VYLIHRGLPESDAFQIME-KVRKGKGLSE 1237

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + K           + +      +    +   Y F K+HAAAY + + + AW K  +P+ 
Sbjct: 1238 EHKAI---------MREYDVPEWYMDSCEKIKYMFPKAHAAAYVLNAMRVAWFKVKHPIW 1288

Query: 787  FLAASMTLEMDNVE-------------KIK--------------------KFCQDARQFN 813
            +  A +++   + +             KI                     +   +  +  
Sbjct: 1289 YYCAYLSVRASDFDLVSMSNGKESTKAKINEINAKGMEASTKEKQLLTVLEIVNEMWERG 1348

Query: 814  IQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              +    +N     +F + D+        AI G+GT  A+ I+ A  + PF S ED  +R
Sbjct: 1349 FTLKMVDINKSHATEFIIEDDNTLIAPFRAIDGLGTNVAKSIVAAREESPFLSKEDLQTR 1408

Query: 872  VDSKKLNRRVL-ESLVFAGALD 892
                K     + E+ V  G  D
Sbjct: 1409 GKVSKSLIEYMTENHVLDGLPD 1430



 Score = 77.7 bits (190), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 5/108 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH++ S+L+   S+++  ++       AIA+TD   L +  E S  A + G++ I 
Sbjct: 337 VELHVHTNMSMLDATNSISDFTNQAKDWGHTAIAVTDHATLQAYPEASGAAKSTGLKMIY 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG----YQRLIEL 115
           G + +I         N           +V  V T  G    Y  +IEL
Sbjct: 397 GVEANIVDDGVPIAYNPDHIELKEATYVVFDVET-TGLSAIYDNIIEL 443


>gi|315651645|ref|ZP_07904656.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986]
 gi|315486099|gb|EFU76470.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986]
          Length = 1483

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 174/932 (18%), Positives = 325/932 (34%), Gaps = 172/932 (18%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +EF ++  A GI  +           +L  TN           +++L     G   L +L
Sbjct: 615  VEFIKRLKAKGINKLSDVA-------SLGETNADIVKKTKYNHVIILAKNDIGRINLYKL 667

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +S  ++ D   +  RI  S L ++  EGLI+ +    G + +A   +++     R+++F 
Sbjct: 668  ISLSHI-DFFNKRPRIPKSILAKM-REGLIIGSACEQGEVYKAILDDATDAELNRIVSFY 725

Query: 176  KLFGDRLYVNLQR---------HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
                 +   N            H   D +    ++ +L   ++ P+VAT +  FL+ ED 
Sbjct: 726  DYLEIQPIGNNMFLIDDEQNDIHSKEDLQDINRRIAELGDIYDKPVVATCDVHFLNPEDE 785

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSF 283
                ++                + P  YL+   EM+  F  L   +A E  V   R  + 
Sbjct: 786  IYRRIIFYGKGYKDAD------IQPPLYLRTTKEMLDEFEYLGSEKAYEVVVTNTRMIAD 839

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            +++V +P+ P     +C  + +  + +L          +  +         +    RL  
Sbjct: 840  MVEVISPVRP----DKCPPVIENSDEDLTAACYKKAHEQYGKNL------PKIVEDRLKK 889

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            ELN I    F+  ++I    ++ + ++   VG  RGS   S  AY   IT+++PL     
Sbjct: 890  ELNSIISNGFAVMYIIAKKLVEKSNEDGYLVG-SRGSVGSSFAAYTSGITEVNPLPAHYY 948

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                    F + FE FL       PD D
Sbjct: 949  CDCKYVDFDSPEVKAFAGRAGCDMPDKICPKCGKKLKKDGFDIPFETFLGFKGDKEPDID 1008

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  + +     Y +  +G     +  T G+L  K A   V                  
Sbjct: 1009 LNFSGEYQPNAHAYTEVIFGKGHTYRAGTVGTLANKTAYGYVKHYF-------------- 1054

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--R 537
                                + +  +     +  ++   EG+ R    H  GI++     
Sbjct: 1055 --------------------DDKNENKRKCEVNRLATGCEGVRRTTGQHPGGIIVLPHGE 1094

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+ R       ++  T F+   I+   L+K D LG +  T+++   D      V
Sbjct: 1095 EIYTFTPVQRPANDMTTNIITTHFDYHAIDH-NLLKLDILGHQDPTMIRMLQDLTGIDPV 1153

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP D  ET  L      LGI   +         G+     +  + ++   +P  
Sbjct: 1154 ----KDIPLDSKETMSLFQNTKALGIEPKDILDCPLGALGVPEFGTDFAMQMLLDTKPEG 1209

Query: 655  IDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            + ++V      +G +  + +   LI       +  I  ++ +M I  +  G    E+  +
Sbjct: 1210 LSDLVRIAGLAHGTDVWLGNAQTLILEGKATIRTAICTRDDIM-IYLIEKGLDEGESFKI 1268

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
              ++ K          + ++    + G+        +    K   Y F K+HAAAY +++
Sbjct: 1269 MESVRKGK-----GLTDEWVEHMEEKGVPD-----WYIWSCKKIKYMFPKAHAAAYVMMA 1318

Query: 774  YQTAWMKTHYPVEFLAASMTLE---------MDNVEKI---------------------- 802
            ++ A+ K  YP+ +  A  T+              EK+                      
Sbjct: 1319 WRIAYCKIFYPLAYYTAYYTIRATGFNYSLMCMGREKLEYNISEYRKKTDATAKDADTLR 1378

Query: 803  -KKFCQDARQFNIQIMPPSV-NTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASAD 859
              +  Q+      +     +       F++  + +I  SL++I G+G T A  I+ A+  
Sbjct: 1379 DMRIVQEMYARGFEFAKIDLFKVHPTKFQIMDNGKIMPSLSSIDGLGETAATSIVNATKA 1438

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             PF S +DF SR    K    +L+SL   G L
Sbjct: 1439 GPFISKDDFMSRAKVGKSTCELLDSLNLLGDL 1470



 Score = 68.1 bits (165), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S  +G  S  +I+++       AIAITD  N+ +   F++ +       II
Sbjct: 376 VELHCHTKMSDFDGVSSATDIINQAKNWGMDAIAITDHGNIQA---FTEASHVKNPPKII 432

Query: 72  G 72
            
Sbjct: 433 Y 433


>gi|238924126|ref|YP_002937642.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
 gi|238875801|gb|ACR75508.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
          Length = 1510

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 175/940 (18%), Positives = 319/940 (33%), Gaps = 182/940 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +K    GI  +       D  + L  ++            ++L +  +G   L  L
Sbjct: 636  VKFIEKLKDRGISSL-------DEVNALAKSSVEMIRKMPTYHAIILATCDQGRTNLYRL 688

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +S  ++    K+  RI  S   +   +GL++ +   +G + RA      Q    RL+ F 
Sbjct: 689  ISLSHIKYYNKR-PRIPKSEFNKY-RDGLLIGSACEAGELYRAILNGRPQEEITRLVNFY 746

Query: 176  KLFGDRLYVNLQRHRGYDR----------YRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
                 +   N       +               ++V+L       +VAT +  FL+ ED 
Sbjct: 747  DYLEIQPLGNNAFMIRDEDSDIASNDDLIDINKRIVKLGEEFGKLVVATCDVHFLNPEDE 806

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIAR 279
                ++MA        +          YL+   EM+  F  L         + NT +IA 
Sbjct: 807  IYRRIIMAGKGFKDADE------QAPLYLRTTEEMLKEFEYLGSKKAEEVVITNTNKIAD 860

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
             C  I  V     P  IE          +  LR         R+    +         ++
Sbjct: 861  MCERISPVRPDKCPPVIE--------NSDGMLREICYNKAN-RMYGDPL-----PPIVKE 906

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL- 398
            RLD ELN I    ++  ++I    +  + ++   VG  RGS   S  A    IT+++PL 
Sbjct: 907  RLDRELNSIISNGYAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFVATMSGITEVNPLH 965

Query: 399  --------------------------------------------RFSLLFERFLNPDRMS 414
                                                         F + FE FL      
Sbjct: 966  AHYLCTHCKYSDFDSPEVQAFSGRGGCDMPDKLCPKCGRPLSKEGFDIPFETFLGFKGNK 1025

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D++F  + + +  +Y +  +G  +  +  T G+L  K A   +             
Sbjct: 1026 EPDIDLNFSGEYQSKAHKYTEVIFGEGQTFKAGTIGTLADKTAFGYIKNYY--------- 1076

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
                                    R  R  +  +DR++   Q   G+ R    H  GIV+
Sbjct: 1077 ----------------------EERGVRKRNCEIDRIV---QGCVGVRRTTGQHPGGIVV 1111

Query: 535  GD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
                  ++   P+         D+  T F+   I+   L+K D LG    T+++   D  
Sbjct: 1112 LPMGEEINTFTPVQHPANDMTVDITTTHFDYHSIDH-NLLKLDILGHDDPTMIRMLQDLT 1170

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                  VD + IP DD     L      LGI   +  G      G+     +  + ++  
Sbjct: 1171 G-----VDPTKIPLDDKAVMSLFQNTSALGIEPEDIDGCPLGALGIPEFGTDFAMGMLLD 1225

Query: 650  YRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS-- 706
             +P    +++      +G +  + +   LI+         I  ++ +M     +   S  
Sbjct: 1226 TKPKEFSDLIRIAGLSHGTDVWLGNAQTLIEEGTATISTCICTRDDIMTYLISMGLESEE 1285

Query: 707  -LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
              +  + +R+ +  K K     Q  ++      +G+        +    +   Y F K+H
Sbjct: 1286 AFNIMEKVRKGIIAKGK---CPQWPQWKEDMKAHGVPD-----WYIWSCEKIKYMFPKAH 1337

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLE------------------------------ 795
            AAAY +++++ A+ K  YP+ + AA  ++                               
Sbjct: 1338 AAAYVMMAWRIAYCKVFYPLAYYAAYFSIRATGFSYELMCQGKDRLENYMKDYKKRKDTL 1397

Query: 796  ---MDNVEKIKKFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
                 +V K  +  Q+        MP  +       F++ D ++  ++ +I G+G   A 
Sbjct: 1398 SNKEQDVFKDMRIVQEMYARGFDFMPLDIYRAHPNRFQIIDGKLMPAINSIDGLGDNAAI 1457

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +I EA+ D PF S +DF  R    +    ++  L   G+L
Sbjct: 1458 YISEAAKDGPFLSKDDFRERTHVSRTAVDLMSDLGLLGSL 1497



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
           V L  H+  S ++G   + +I+         AIAITD  ++ +  + 
Sbjct: 396 VELHCHTKMSDMDGVSDVKDIVKCAMRWGHKAIAITDHGDVQAFPDA 442


>gi|153810942|ref|ZP_01963610.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174]
 gi|149832830|gb|EDM87913.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174]
          Length = 1439

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 157/889 (17%), Positives = 304/889 (34%), Gaps = 174/889 (19%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
                ++L     G   L +LVS+ +L    ++  R+  S   E   EGL++ +   +G +
Sbjct: 602  TYHAIILARNETGRVNLYKLVSQSHLK-YYRRRPRVPKSLFLE-HREGLLIGSACEAGEL 659

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-----------YRESQVVQLA 204
             +A   N+ +    RL+ F      +   N       ++               ++V+L 
Sbjct: 660  YQALLRNAPEPEIARLVNFYDYLEIQPLGNNAFMIADEKNDRVKSNEDLIELNKKIVKLG 719

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
               + P+VAT +  F+  +D     ++MA       S  D        YL+   EM+  F
Sbjct: 720  DQFKKPVVATCDVHFMDPQDEIYRRIIMA---GNGFSDADN---QAPLYLRTTEEMLEEF 773

Query: 265  SDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            S L   +A E  +    + + +++  +PI P         + +  + +L++         
Sbjct: 774  SYLGSEKAEEVVITNTNKIADMIEKISPIHPDKFPP----VIENSDQDLKDICFNRAHEM 829

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
              +         +    RL+ EL+ I    ++  ++I    +  + ++   VG  RGS  
Sbjct: 830  YGENL------PKIVEDRLNKELHSIISNGYAVMYIIAQKLVWKSNEDGYLVG-SRGSVG 882

Query: 383  GSVTAYALTITDIDPLR------------------------------------------- 399
             S+ A    IT+++PL                                            
Sbjct: 883  SSLAATMSGITEVNPLPPHYLCPECKYSDFDSPEVKKFGGMAGCDMPDKVCPKCGAKMSK 942

Query: 400  --FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
              F + FE FL       PD D++F  + +    RY +  +G  +  +  T G+L  K A
Sbjct: 943  EGFDIPFETFLGFKGDKEPDIDLNFSGEYQANAHRYTEVIFGKGQTFKAGTIGTLAEKTA 1002

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
               V                                      E R        +  I Q 
Sbjct: 1003 FGYVKNYY----------------------------------EERGQHKRYCEINRIVQG 1028

Query: 518  LEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFD 572
              G+ R    H  GI++      + +  P+     D  SD+  T F+   I+   L+K D
Sbjct: 1029 CTGIRRTTGQHPGGIIVLPVGVEIEKFTPVQHPANDENSDIITTHFDYHSID-GNLLKLD 1087

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
             LG    T+++   D             +P D  E   L  +   LGI   +  G +   
Sbjct: 1088 ILGHDDPTMIRMLEDLTGLSAR-----DVPLDSKEVMSLFASTDALGIKPEDIGGCKLGC 1142

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIY 691
             G+     +  + ++   +P    ++V      +G +  + +   LI+         I  
Sbjct: 1143 LGVPEFGTDFAMQMLIDTKPKYFSDLVRIAGLSHGTDVWLGNAQTLIEEGKATISTAICT 1202

Query: 692  QEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++ +M       + S  + +  + +R+   K ++EE +              + +     
Sbjct: 1203 RDDIMIYLISMGVESSLAFTIMEAVRKG--KGLREEWEA------------TMREHNVPE 1248

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE------------- 795
             +    K   Y F K+HAAAY +++++ AW K   P+ + AA  ++              
Sbjct: 1249 WYIWSCKKIKYMFPKAHAAAYVMMAWRIAWFKVFKPLAYYAAFFSIRATAFSYETMCMGR 1308

Query: 796  --------------------MDNVEKIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNR 834
                                  +  K  +  Q+     ++ MP          F++ D +
Sbjct: 1309 DRLDFYLAELRKKGDAASKKEQDTIKDMRIVQEMYARGLEFMPIDLYRAKANRFQIIDGK 1368

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            +  +L  I G+G   A  +++A+    F S +DF  R    K    +++
Sbjct: 1369 LMPALNCIDGMGDKAAEAVVDAAKQGKFLSKDDFRDRTKVSKTVIDLMD 1417



 Score = 75.0 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 2   TQYLEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
           +  ++ SP   V L  H+  S ++G  +  +++ +       AIAITD   + +  E 
Sbjct: 309 STRMDTSPQKRVELHCHTKMSDMDGVTTAKDLVKRAYEWGHKAIAITDHGVVQAFPEA 366


>gi|172057851|ref|YP_001814311.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum 255-15]
 gi|171990372|gb|ACB61294.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum 255-15]
          Length = 1431

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 164/946 (17%), Positives = 328/946 (34%), Gaps = 191/946 (20%)

Query: 57   EFSQKACAAG---IQPIIGCQLDIDMQDNLKMTNQ--GKTPFPTVPSIVLLVSTAEGYQR 111
                 A A G   ++ +       +M+ +L +  +              +      G + 
Sbjct: 558  RAIYDAEATGYLMLKLLQMADEMFNMKTHLSLNREMGKDISRARPYHATVYAKNRTGLKN 617

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L +L+S  +      + VR   S L     +GLI+ +   +G +  A    S +   K +
Sbjct: 618  LYQLISLAHTK-HVHRVVRTPRSQLV-AHRDGLIIGSACDNGEVFDAALNKSDEDLAKVM 675

Query: 172  LTFK--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
              +   ++    +Y       + ++    R    +V+++A  +++  VAT N  +L + D
Sbjct: 676  RFYDFIEIQPPAMYGHLIEREIVQNELELRELIKKVIRVAEENDILPVATGNVHYLDQHD 735

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCS 282
                +VL+        +  +  +  P  + +   EM+S F  L   +   + I    + +
Sbjct: 736  ATYREVLIRTQGGA--NMLNMRKQLPPAHFRTTQEMMSDFKFLGPDVSERLVITNSQQVA 793

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
               +    I       + +      + E+R+ +                   +    RL+
Sbjct: 794  GWFENIDIIPKDLFTPKIEGA----DEEVRSLSYDMAHQIYGD------VLPEIVEARLE 843

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             EL  I    F+  +LI    ++ +  +   VG  RGS   S+ A    IT+++PL    
Sbjct: 844  KELKSIIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSLVATMTEITEVNPLPPHY 902

Query: 400  --------------------------------------FSLLFERFLNPDRMSMPDFDID 421
                                                    + FE FL      +PD D++
Sbjct: 903  VCPNCKESEFFDDGSVGSGFDLPDKTCKTCDVPLIKDGHDIPFETFLGFKGDKVPDIDLN 962

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  + + +   Y +  +G + V +  T G++  K A   V                    
Sbjct: 963  FSGEYQPKAHAYTKVLFGDDYVYRAGTIGTIAEKTAYGYV-------------------- 1002

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PL 539
                    +    ++        +  VDRL+     + G+ R    H  GI++      +
Sbjct: 1003 --------KGYQSENDLN---YRNAEVDRLVS---GVTGVKRTTGQHPGGIIVVPDYMDI 1048

Query: 540  SQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
              + P+     D+ S+   T F+   I    L+K D LG    T+++   D   +     
Sbjct: 1049 YDISPIQFPADDMGSEWKTTHFDFHSIHD-NLLKLDILGHDDPTMIRMLQDLSGR----- 1102

Query: 597  DLSLIPFDDHETYHLLT--------------TKGTLGIFQLESSGMRQALEGMQPDCIED 642
            D   IP DD E   + +                GTLGI +  +  +RQ LE  +P    +
Sbjct: 1103 DPKTIPVDDAEVMKIFSSTESIGVTPEQIDSKTGTLGIPEFGTKFVRQMLEETKPTTFSE 1162

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++ +  L     +                 +   LI     E + VI  ++ +M +  + 
Sbjct: 1163 LVQISGLSHGTDVWLG--------------NASELIYNGTCELKDVIGCRDDIM-VYLIY 1207

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +G   S A  +  ++ K     ++ ++        +N +      +  ++      Y F 
Sbjct: 1208 AGLEPSLAFKIMESVRKGKGLSIEMEEA-----MIENHVPLWYIDSCKKI-----KYMFP 1257

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFN 813
            K+HAAAY +++ + A+ K H+P+ + A+  T+   + +          ++K  QD +   
Sbjct: 1258 KAHAAAYVLMAVRIAYYKVHHPMYYYASYFTVRAGDFDIGAMNKGSAAVRKVLQDIKDKG 1317

Query: 814  IQIMPPS-------------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             +                                +   +F +  + +     A+ G+GT 
Sbjct: 1318 FEATAKDKGLYTVLEIALEMIERGFTFSKVDLYKSSASEFLIDGDALLPPFDAVTGLGTN 1377

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             A+ I+EA     F S ED   R    KL++ ++E+L   G L+  
Sbjct: 1378 AAKQIVEARKGGEFLSKEDLQKRA---KLSKSIIETLDNLGCLEGL 1420



 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS  S ++  +++   +++ AA   PA+AITD     S  +         I+ + 
Sbjct: 328 VELHAHSQMSQMDAVMNVTKYVERAAAWGHPAVAITDHAGAQSFPDAYYAGKKNDIKILY 387


>gi|260663976|ref|ZP_05864829.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii SJ-7A-US]
 gi|260561862|gb|EEX27831.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii SJ-7A-US]
          Length = 1439

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 168/886 (18%), Positives = 308/886 (34%), Gaps = 148/886 (16%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L  T +G + + +LVS         +  R  +S L++   EGL+  +G   
Sbjct: 609  RAKPTHMTVLALTQKGLKNMYKLVSLAST-QYFYREPRTPISELRKY-REGLLFGSGCWK 666

Query: 153  GPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAY 205
            G +           A ++   +   ++     Y       L +           + +L  
Sbjct: 667  GDVFITMMQKGYDEAREKARFYDFLEVQPPAAYSQLIADELIKDEEQLEEILKNIYKLGQ 726

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
               +P+VAT +  +L+ ED    ++L+A       S  +R +  P  +  +  EM+  F+
Sbjct: 727  ELNIPVVATGDCHYLNPEDKIYREILIAAQ----RSNPNRNKPQPKLHFYSTQEMLDAFN 782

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFI---EKECDDIQKEEENELRNKAV 316
             + E       ++NT +IA     I  V + + P  I   +++  D+   +  EL  K +
Sbjct: 783  FMGEDVAKEIVIDNTNKIADEIEEIAPVKSGLYPPHIKDADQQMTDLTYNKAYELYGKPL 842

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                              +  + R++ ELN I    ++  +LI    +  + K+   VG 
Sbjct: 843  -----------------PKIVKDRIELELNSIISNGYAVIYLISQKLVAKSNKDGYLVG- 884

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFCQ--- 424
             RGS   S+ A    IT+++PL         ++S  FE         +PD     C    
Sbjct: 885  SRGSVGSSLVATMSGITEVNPLAPHYRCPKCKYSHFFENGEYGSGFDLPDKKCPECGTEL 944

Query: 425  --DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL-CKLIPN 481
              D +D         +G ++V  I    S   +    +  R +   +   +      I  
Sbjct: 945  VKDGQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNYIRVM---FGPANSFRAGTIST 1000

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--L 539
                     A      F E R  +     L  ++    G+ R    H AGIV+      +
Sbjct: 1001 VADKT----AYGYAKHFEEERNLNLRSAELDRLATGTSGVKRTTGQHPAGIVVVPDDMDI 1056

Query: 540  SQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
                P+             T F+   I    ++KFD LG    T+++   D        V
Sbjct: 1057 YDFTPVQYPADDLNAAWLTTHFDFHSIHD-NILKFDILGHDDPTMIRMLQDL-----SGV 1110

Query: 597  DLSLIPFDDHETYHLLT--------------TKGTLGIFQLESSGMRQALEGMQPDCIED 642
            D   IP DD     L +                GTLG+ +  +  +R  LE   P    +
Sbjct: 1111 DPMTIPPDDPGVMSLFSGTDILGVTPEQIASKTGTLGVPEFGTKFVRGMLEETNPTTFSE 1170

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++ +  L     +      +   NG  K+ ++    D ++ +     +  E         
Sbjct: 1171 LLQISGLSHGTDVWLGNAEDLVNNGTCKLKNVIGCRDNIMMDLIHWGVKPEVA------- 1223

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
              +S  E+    R +       +             N I      +  ++      Y F 
Sbjct: 1224 --FSTMESVRHGRGISDDDMAVL----------KKNNNIPDWYIPSCLKI-----KYMFP 1266

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------------KIK--- 803
            K+HA AY +++ + AW K +YPV +  +  ++  D  +                KI+   
Sbjct: 1267 KAHATAYILMALRIAWFKVYYPVIYYTSYFSVRADLFDLVAMSHGKNSVKAAIKKIQDQG 1326

Query: 804  --------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGT 847
                          +   +  +  I+I    VN    ++FK+ D+        A+ G+G 
Sbjct: 1327 NDASAKDKSLLTVLEIANECLERGIKIKMVDVNESEALNFKIVDDHTILAPFNAVPGLGD 1386

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE-SLVFAGALD 892
              A+ I+ A A++ F S ED  +R    +     LE + V  G  D
Sbjct: 1387 NAAKQIVAARAEQKFLSKEDLRTRGKVSQTIMDYLEVNGVLEGMPD 1432



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 42/104 (40%)

Query: 2   TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           T+  ++ P  V L +H+  S L+   +  + +       Q AIAITD  ++ S  E    
Sbjct: 326 TEKYQEEPKRVELHLHTIMSQLDATNTATDFISTAKKFGQKAIAITDHGDVQSFPEAYSA 385

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                ++ + G + ++     L + N     +     ++  V T
Sbjct: 386 GKKQKMKILYGLEANMVDDHALLVLNPASMTYENREFVIFDVET 429


>gi|317498937|ref|ZP_07957220.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893770|gb|EFV15969.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 1228

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 170/940 (18%), Positives = 321/940 (34%), Gaps = 184/940 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +EF        I  +          DN+ +  +G+     +   ++LV    G   L  L
Sbjct: 358  VEFISMLKEKDITDLDQVNEF--ANDNVDLIKKGR-----MYHGIILVKNNTGRVNLNRL 410

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L +   +  R+  S + +   +GLI+ +   +G + +A     S      +++F 
Sbjct: 411  VSESHL-NYFNRRPRMPKSLINKY-RDGLIIGSACEAGELYQALLDERSDETIANIVSFY 468

Query: 176  KLFGDRLYVNLQRHRGYDRYRE-----------SQVVQLAYTHELPLVATNNSLFLSEED 224
                 +   N +   G +R               ++V L      P+VAT +  FL+ +D
Sbjct: 469  DYLEIQPVGNNEFMIGSERVENVNSIEDIQKFNQKIVDLGEQFHKPVVATCDVHFLNPDD 528

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCS 282
                 +L+A        Q          Y +   EM+  F+ L   +A E  +    + +
Sbjct: 529  AIYRSILLAGKGFKDADQ------QAPLYFRTTQEMLDEFAYLGSEKAKEVVITNTNKIN 582

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
             +++  +PI P        D  K     LR                 +         RL+
Sbjct: 583  DMIENISPIHPDKCPPVIPDSDKT----LREICYNRAHEIYGDDLPER------VTSRLE 632

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             ELN I    ++  ++I    +  +  +   VG  RGS   S  A    IT+++PL    
Sbjct: 633  KELNSIIGNGYAVMYIIAQKLVWDSNDHGYLVG-SRGSVGSSFAATMSGITEVNPLPAHY 691

Query: 400  --------------------------------------------FSLLFERFLNPDRMSM 415
                                                          + FE FL       
Sbjct: 692  ICPECHFVDFDSEQVQKYAKMGMSGFDMPDAYCPKCGAKMTKEGQDIPFETFLGFKGNKE 751

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  + + +   YV+  +G  +  +  T G+L  K A   V +            
Sbjct: 752  PDIDLNFSGEYQGKAHAYVEVIFGKGKAFRAGTIGTLAEKTAYGYVLKY----------- 800

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI- 534
                                    E  ++      +  ++    G+ R    H  GI++ 
Sbjct: 801  ----------------------LEERGISKRRC-EIERLALGCTGVKRTTGQHPGGIIVV 837

Query: 535  -GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
              D+ +     +     D+ + +  T F    I++  L+K D LG    +++++  D   
Sbjct: 838  PHDKEIYDFTAVQHPANDMNTPIITTHFEYHSIDQ-NLLKLDILGHDDPSMIRRMEDITG 896

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD     L     TLGI   +  G      G+     + +I ++   
Sbjct: 897  -----IDAQTIPMDDKGVMGLFHGTETLGITPEDIDGTPLGSLGVPEFGTDFVIQMLQDT 951

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYS 706
             P    ++V  +   +G +  + +   LI+         I  ++ +M       L    S
Sbjct: 952  HPQSFSDLVRISGLSHGTDVWLGNAQTLIENGDAVISTAICCRDDIMVYLINQGLEQEAS 1011

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
                + +R+   K + +E ++             +      + +    K   Y F K+HA
Sbjct: 1012 FKIMEGVRKG--KGLTDEQEQM------------MRDHNVPDWYIWSCKQIKYMFPKAHA 1057

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV-------------EKIK---------- 803
            AAY +++++ AW K ++P+ + AA  ++                  EK+           
Sbjct: 1058 AAYVMMAWRIAWYKVYHPLAYYAAYFSIRAKAFSYEDMCLGKERLDEKMSIIKNTPKHEV 1117

Query: 804  -----------KFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
                       K   +      +  P  +      DF+V D +I  +L +I G+G   A+
Sbjct: 1118 KNADLDLLREMKIADEMYARGYEFWPLDIYKAKAKDFQVIDGKIMPALTSIDGMGEKAAQ 1177

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             + EA+  +PF SLE+F +R  + +     ++ L   G L
Sbjct: 1178 QVEEAAKGEPFTSLENFRNRTKAPQACIEKMKELGIMGDL 1217



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           V L +H+  S  +  + + +I+++      PA+AITD   L  
Sbjct: 111 VELHLHTVMSDNDSVVQIKDIVNRAYEWGHPAVAITDHGVLQG 153


>gi|168334980|ref|ZP_02693097.1| DNA polymerase III, alpha subunit [Epulopiscium sp. 'N.t. morphotype
            B']
          Length = 1454

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 171/890 (19%), Positives = 315/890 (35%), Gaps = 171/890 (19%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++LV    G   L +LVS  +L D   +  R+  S + +   EGLI+ +   +G +  A 
Sbjct: 629  IILVKNEIGRINLNKLVSASHL-DYFARRPRMPKSLIAQ-HREGLIIGSACEAGEVFSAL 686

Query: 160  FFNSSQVAEKR----LLTFKKLFGDRLYVNLQRH----RGYDRYRESQVVQLAYTHELPL 211
              +S+ +         L  +    +   +   +H    R        ++VQL       +
Sbjct: 687  LRDSNNIESIVDFYDYLEIQPTMNNEFMIRSDKHAATSRKDLEDYNKRIVQLGEKCGKRV 746

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--E 269
            VAT +  FL  ED     +LM               + P  Y +   EM+  FS L   +
Sbjct: 747  VATCDVHFLDPEDEIYRRILMDYKGFKDAD------LQPPLYFRTTDEMLDEFSYLGSAK 800

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            A E  VE     +  ++  +P+LP     +C  +  + + ELR                 
Sbjct: 801  AYEVVVENTNAIATQIEKISPVLP----DKCPPVIADSDKELRKICYDKAHEIYGPDL-- 854

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                 +    RL+ ELN I    ++  ++I    +  +  +   VG  RGS   S  A  
Sbjct: 855  ----PEPVTARLERELNSIISNGYAVMYIIAQKLVWDSNDHGYLVG-SRGSVGSSFAATM 909

Query: 390  LTITDIDPL-----------------------------------------RFSLLFERFL 408
              IT+++PL                                            + FE FL
Sbjct: 910  SGITEVNPLAAHYICPQCFYTDFDTNSAGTSGCDIPDRNCPKCQTPLNKEGHDIPFETFL 969

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
                   PD D++F  + + +  +YV+  +G  +  +  T G++  K AL  V + L+  
Sbjct: 970  GFYGDKEPDIDLNFSGEYQSKAHKYVEVLFGEGKAFRAGTIGTVADKTALMYVFKYLEK- 1028

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
                                          R+       + R+   +    G+ R    H
Sbjct: 1029 ------------------------------RQLSKRRAEMRRI---ASGCTGVKRTTGQH 1055

Query: 529  AAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
              GI++   DR + +   +     DV +    T +    I+   L+K D LG    T+++
Sbjct: 1056 PGGIIVVPHDRDIYEFCAVQHPANDVNTPXITTHYEYHSIDH-NLLKLDILGHDDPTIIR 1114

Query: 584  KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +  D           + I  D  +   L      LGI   + SG++    G+     + +
Sbjct: 1115 RLEDITGISS-----ATIRLDXKDVMALFHGTAVLGIQPADISGIQLGSLGVPEFGTDFV 1169

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---A 699
            I ++   +P    ++V  +   +G +  + +   LI+        VI  ++  M      
Sbjct: 1170 IQMLLDAKPQNFSDLVRISGLSHGTDVWLGNAQTLIEEGKGTISTVIXTRDDXMTYLISM 1229

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
             L +G + +  + +R+  G K + E                  +    + +    K   Y
Sbjct: 1230 GLEAGTAFTIMESVRKGKGLKPEWEQAML--------------EKDVPDWYIWSCKKIKY 1275

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE------------------------ 795
             F K+HAAAY +++++ AW K  +P+ +  A  ++                         
Sbjct: 1276 MFPKAHAAAYVMMAWRIAWYKVFHPLAYYTAFFSIRASSFNYELMCFGKEKLEANMKAIT 1335

Query: 796  ----------MDNVEKIKKFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKG 844
                        +  K  +  Q+         P  +     VDF++ D +I  SL  I G
Sbjct: 1336 SMPKDKQTAKDQDTLKDMRIVQEMYARGFSFKPIDIFTASDVDFQIIDGQIMPSLGTIDG 1395

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +G   A  ++EA+ + PF S ++F +R    K+N+ V++ +   G L   
Sbjct: 1396 MGDKAAAMVVEAAKNGPFLSRDEFKTRT---KVNQTVIDKMYQLGMLGDL 1442



 Score = 73.1 bits (178), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           V L +H+  S ++  + +  ++ +      PA+AITD   L  A   +      
Sbjct: 350 VELHLHTKMSDMDSVVDIKAMIKRAKEWGMPAVAITDHGCL-QAFPIANHCIEK 402


>gi|282932865|ref|ZP_06338262.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 208-1]
 gi|281302900|gb|EFA95105.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 208-1]
          Length = 1439

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 168/886 (18%), Positives = 308/886 (34%), Gaps = 148/886 (16%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L  T +G + + +LVS         +  R  +S L++   EGL+  +G   
Sbjct: 609  RAKPTHMTVLALTQKGLKNMYKLVSLAST-QYFYREPRTPISELRKY-REGLLFGSGCWK 666

Query: 153  GPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAY 205
            G +           A ++   +   ++     Y       L +           + +L  
Sbjct: 667  GDVFITMMQKGYDEAREKARFYDFLEVQPPAAYSQLIADELIKDEEQLEEILKNIYKLGQ 726

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
               +P+VAT +  +L+ ED    ++L+A       S  +R +  P  +  +  EM+  F+
Sbjct: 727  ELNIPVVATGDCHYLNPEDKIYREILIAAQ----RSNPNRNKSQPKLHFYSTQEMLDAFN 782

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFI---EKECDDIQKEEENELRNKAV 316
             + E       ++NT +IA     I  V + + P  I   +++  D+   +  EL  K +
Sbjct: 783  FMGEDVAKEIVIDNTNKIADEIEEIAPVKSGLYPPHIKDADQQMTDLTYNKAYELYGKPL 842

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                              +  + R++ ELN I    ++  +LI    +  + K+   VG 
Sbjct: 843  -----------------PKIVKDRIELELNSIISNGYAVIYLISQKLVAKSNKDGYLVG- 884

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFCQ--- 424
             RGS   S+ A    IT+++PL         ++S  FE         +PD     C    
Sbjct: 885  SRGSVGSSLVATMSGITEVNPLAPHYRCPKCKYSHFFENGEYGSGFDLPDKKCPECGTEL 944

Query: 425  --DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL-CKLIPN 481
              D +D         +G ++V  I    S   +    +  R +   +   +      I  
Sbjct: 945  VKDGQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNYIRVM---FGPANSFRAGTIST 1000

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--L 539
                     A      F E R  +     L  ++    G+ R    H AGIV+      +
Sbjct: 1001 VADKT----AYGYAKHFEEERNLNLRSAELDRLATGTSGVKRTTGQHPAGIVVVPDDMDI 1056

Query: 540  SQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
                P+             T F+   I    ++KFD LG    T+++   D        V
Sbjct: 1057 YDFTPVQYPADDLNAAWLTTHFDFHSIHD-NILKFDILGHDDPTMIRMLQDL-----SGV 1110

Query: 597  DLSLIPFDDHETYHLLT--------------TKGTLGIFQLESSGMRQALEGMQPDCIED 642
            D   IP DD     L +                GTLG+ +  +  +R  LE   P    +
Sbjct: 1111 DPMTIPPDDPGVMSLFSGTDILGVTPEQIASKTGTLGVPEFGTKFVRGMLEETNPTTFSE 1170

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++ +  L     +      +   NG  K+ ++    D ++ +     +  E         
Sbjct: 1171 LLQISGLSHGTDVWLGNAEDLVNNGTCKLKNVIGCRDNIMMDLIHWGVKPEVA------- 1223

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
              +S  E+    R +       +             N I      +  ++      Y F 
Sbjct: 1224 --FSTMESVRHGRGISDDDMAVL----------KKNNNIPDWYIPSCLKI-----KYMFP 1266

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------------KIK--- 803
            K+HA AY +++ + AW K +YPV +  +  ++  D  +                KI+   
Sbjct: 1267 KAHATAYILMALRIAWFKVYYPVIYYTSYFSVRADLFDLVAMSHGKNSVKAAIKKIQDQG 1326

Query: 804  --------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGT 847
                          +   +  +  I+I    VN    ++FK+ D+        A+ G+G 
Sbjct: 1327 NDASAKDKSLLTVLEIANECLERGIKIKMVDVNESEALNFKIVDDHTILAPFNAVPGLGD 1386

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE-SLVFAGALD 892
              A+ I+ A A++ F S ED  +R    +     LE + V  G  D
Sbjct: 1387 NAAKQIVAARAEQKFLSKEDLRTRGKVSQTIMDYLEVNGVLEGMPD 1432



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 42/104 (40%)

Query: 2   TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           T+  ++ P  V L +H+  S L+   +  + +       Q AIAITD  ++ S  E    
Sbjct: 326 TEKYQEEPKRVELHLHTIMSQLDATNTATDFISTAKKFGQKAIAITDHGDVQSFPEAYSA 385

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                ++ + G + ++     L + N     +     ++  V T
Sbjct: 386 GKKQKMKILYGLEANMVDDHALLVLNPASMTYENREFVIFDVET 429


>gi|323466335|gb|ADX70022.1| DNA polymerase subunit III [Lactobacillus helveticus H10]
          Length = 1436

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 164/879 (18%), Positives = 297/879 (33%), Gaps = 132/879 (15%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L    +G + L +LVS     D   +  R   S L  +  EGL   +G   
Sbjct: 606  RARPSHMTVLAKDQKGLKNLYKLVSIASTKD-FYRIPRTPKSDLARLH-EGLFYGSGCWQ 663

Query: 153  GPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGY-DRYRESQVVQ----LAY 205
            G +  A        A ++   +   ++     Y  L       D  +   +++    L  
Sbjct: 664  GDVFIAMMQKGYDEAREKAKFYDFLEVQPPANYSQLIEDGLIKDEAQLEDIIRNIYKLGK 723

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                P+VAT ++ ++   D     +L++       S  +R +  PD +  +  EM+  FS
Sbjct: 724  ELNKPVVATGDAHYVEPHDAIYRTILISAQ----RSNPNRNKPQPDLHFYSTQEMLDAFS 779

Query: 266  DLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
             L E  A E  ++   + ++ +    PI             +E +    +KA        
Sbjct: 780  FLGEDIAKEIVIDNTNKIAYEISEIQPIKDGLYPPHIAHADEEMKKLTYDKAYE------ 833

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                +      +  + R+D ELN I    ++  +LI    +  + K+   VG  RGS   
Sbjct: 834  ----LYGKPLPKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGSVGS 888

Query: 384  SVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFCQ-----DRRDE 429
            S+ A    IT+++PL         ++S  FE         +PD     C      D +D 
Sbjct: 889  SLVATMSGITEVNPLAPHYRCPKCKYSQFFENGEYGSGFDLPDKACPKCGTQLVKDGQDI 948

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
                    +G ++V  I    S   +    +  R +        R    I          
Sbjct: 949  PFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM-FGPDNSYR-AGTIATVADKT--- 1002

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPM-- 545
             A      F E R        L  ++  + G+ R    H AGIV+      +    P+  
Sbjct: 1003 -AYGYAKHFDEERDLKARNAELDRLASGIRGVKRTTGQHPAGIVVVPDDMDIYDFTPVSY 1061

Query: 546  -YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
               DV +   +T ++   I    ++KFD LG    T+++   D        +D   IP D
Sbjct: 1062 PADDVNAAWLITHYDFHSIHD-NILKFDILGHDDPTMIRHLQDL-----SGIDPLTIPPD 1115

Query: 605  DHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            D     L ++               GTLG+ +  +  +R  LE  +P    +++ +  L 
Sbjct: 1116 DPGVMSLFSSPKILGVTPEQIQSETGTLGVPEFGTRFVRGMLEETKPTTFAELLQISGLS 1175

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
                +      +   NG  K+  +    D ++ +     +  E           +S  E+
Sbjct: 1176 HGTDVWLGNAEDLVNNGTCKLKDVIGCRDNIMMDLIHWGVKPEVA---------FSTMES 1226

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
                R +  +    +               I      +  ++      Y F K+HA AY 
Sbjct: 1227 VRHGRGISDENMAIL----------KKNKNIPDWYIPSCLKI-----KYMFPKAHATAYI 1271

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK--------------------------- 803
            +++ + AW K +YP  +  A  ++  D  + +                            
Sbjct: 1272 LMALRIAWFKVYYPEIYYTAYFSVRADLFDLVAMSHGKNTVKAAMKEIQDKGNDASAKDK 1331

Query: 804  ------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGTTTARHIME 855
                  +   +  +  I+I    ++     DFK+ D         A+ G+G   A+ I+ 
Sbjct: 1332 SLLTVLEIANECLERGIKIKMVDIDQSEATDFKILDKHTILAPFNAVPGLGDNAAKQIVA 1391

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLE-SLVFAGALDC 893
            A A+K F S ED   R    +      E + V  G  D 
Sbjct: 1392 ARAEKKFLSKEDLAKRGKVSQTIMNYFEDNGVLEGMPDE 1430



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%)

Query: 2   TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           T+  E     V L +H++ S L+   + ++ +       Q AIAITD  ++ S  E    
Sbjct: 323 TEKYEGEQKRVELHLHTNMSQLDATNAPSDFIKTAKKFGQKAIAITDHGDVQSFPEAYST 382

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
             A G + + G + ++     L + N     +     ++  V T
Sbjct: 383 GKATGTKILYGVEANMIDDHALLVINPAPMTYEDREFVIFDVET 426


>gi|313472267|ref|ZP_07812759.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 1153]
 gi|239529663|gb|EEQ68664.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 1153]
          Length = 1428

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 168/886 (18%), Positives = 308/886 (34%), Gaps = 148/886 (16%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L  T +G + + +LVS         +  R  +S L++   EGL+  +G   
Sbjct: 598  RAKPTHMTVLALTQKGLKNMYKLVSLAST-QYFYREPRTPISELRKY-REGLLFGSGCWK 655

Query: 153  GPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAY 205
            G +           A ++   +   ++     Y       L +           + +L  
Sbjct: 656  GDVFITMMQKGYDEAREKARFYDFLEVQPPAAYSQLIADELIKDEEQLEEILKNIYKLGQ 715

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
               +P+VAT +  +L+ ED    ++L+A       S  +R +  P  +  +  EM+  F+
Sbjct: 716  ELNIPVVATGDCHYLNPEDKIYREILIAAQ----RSNPNRNKSQPKLHFYSTQEMLDAFN 771

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFI---EKECDDIQKEEENELRNKAV 316
             + E       ++NT +IA     I  V + + P  I   +++  D+   +  EL  K +
Sbjct: 772  FMGEDVAKEIVIDNTNKIADEIEEIAPVKSGLYPPHIKDADQQMTDLTYNKAYELYGKPL 831

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                              +  + R++ ELN I    ++  +LI    +  + K+   VG 
Sbjct: 832  -----------------PKIVKDRIELELNSIISNGYAVIYLISQKLVAKSNKDGYLVG- 873

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFCQ--- 424
             RGS   S+ A    IT+++PL         ++S  FE         +PD     C    
Sbjct: 874  SRGSVGSSLVATMSGITEVNPLAPHYRCPKCKYSHFFENGEYGSGFDLPDKKCPECGTEL 933

Query: 425  --DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL-CKLIPN 481
              D +D         +G ++V  I    S   +    +  R +   +   +      I  
Sbjct: 934  VKDGQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNYIRVM---FGPANSFRAGTIST 989

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--L 539
                     A      F E R  +     L  ++    G+ R    H AGIV+      +
Sbjct: 990  VADKT----AYGYAKHFEEERNLNLRSAELDRLATGTSGVKRTTGQHPAGIVVVPDDMDI 1045

Query: 540  SQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
                P+             T F+   I    ++KFD LG    T+++   D        V
Sbjct: 1046 YDFTPVQYPADDLNAAWLTTHFDFHSIHD-NILKFDILGHDDPTMIRMLQDL-----SGV 1099

Query: 597  DLSLIPFDDHETYHLLT--------------TKGTLGIFQLESSGMRQALEGMQPDCIED 642
            D   IP DD     L +                GTLG+ +  +  +R  LE   P    +
Sbjct: 1100 DPMTIPPDDPGVMSLFSGTDILGVTPEQIASKTGTLGVPEFGTKFVRGMLEETNPTTFSE 1159

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++ +  L     +      +   NG  K+ ++    D ++ +     +  E         
Sbjct: 1160 LLQISGLSHGTDVWLGNAEDLVNNGTCKLKNVIGCRDNIMMDLIHWGVKPEVA------- 1212

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
              +S  E+    R +       +             N I      +  ++      Y F 
Sbjct: 1213 --FSTMESVRHGRGISDDDMAVL----------KKNNNIPDWYIPSCLKI-----KYMFP 1255

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------------KIK--- 803
            K+HA AY +++ + AW K +YPV +  +  ++  D  +                KI+   
Sbjct: 1256 KAHATAYILMALRIAWFKVYYPVIYYTSYFSVRADLFDLVAMSHGKNSVKAAIKKIQDQG 1315

Query: 804  --------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGT 847
                          +   +  +  I+I    VN    ++FK+ D+        A+ G+G 
Sbjct: 1316 NDASAKDKSLLTVLEIANECLERGIKIKMVDVNESEALNFKIVDDHTILAPFNAVPGLGD 1375

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE-SLVFAGALD 892
              A+ I+ A A++ F S ED  +R    +     LE + V  G  D
Sbjct: 1376 NAAKQIVAARAEQKFLSKEDLRTRGKVSQTIMDYLEVNGVLEGMPD 1421



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 42/104 (40%)

Query: 2   TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           T+  ++ P  V L +H+  S L+   +  + +       Q AIAITD  ++ S  E    
Sbjct: 315 TEKYQEEPKRVELHLHTIMSQLDATNTATDFISTAKKFGQKAIAITDHGDVQSFPEAYSA 374

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                ++ + G + ++     L + N     +     ++  V T
Sbjct: 375 GKKQKMKILYGLEANMVDDHALLVLNPASMTYENREFVIFDVET 418


>gi|161507686|ref|YP_001577640.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348675|gb|ABX27349.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 1438

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 167/883 (18%), Positives = 301/883 (34%), Gaps = 140/883 (15%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L    +G + L +LVS     D   +  R   S L  +  EGL   +G   
Sbjct: 608  RARPSHMTVLAKDQKGLKNLYKLVSIASTKD-FYRIPRTPKSDLARLH-EGLFYGSGCWQ 665

Query: 153  GPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGY-DRYRESQVVQ----LAY 205
            G +  A        A ++   +   ++     Y  L       D  +   +++    L  
Sbjct: 666  GDVFIAMMQKGYDEAREKAKFYDFLEVQPPANYSQLIEDGLIKDEAQLEDIIRNIYKLGK 725

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                P+VAT ++ ++   D     +L++       S  +R +  PD +  +  EM+  FS
Sbjct: 726  ELNKPVVATGDAHYVEPHDAIYRTILISAQ----RSNPNRNKPQPDLHFYSTQEMLDAFS 781

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
             L E       ++NT +IA   S I  +   + P  I    ++++K   ++        L
Sbjct: 782  FLGEDIAKEIVIDNTNKIADEISEIQPIKDGLYPPHIAHADEEMKKLTYDKAYELYGKPL 841

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                           +  + R+D ELN I    ++  +LI    +  + K+   VG  RG
Sbjct: 842  --------------PKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRG 886

Query: 380  SGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFCQ-----D 425
            S   S+ A    IT+++PL         ++S  FE         +PD     C      D
Sbjct: 887  SVGSSLVATMSGITEVNPLAPHYRCPKCKYSQFFENGEYGSGFDLPDKACPKCGTQLVKD 946

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +D         +G ++V  I    S   +    +  R +        R    I      
Sbjct: 947  GQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM-FGPDNSYR-AGTIATVADK 1003

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLV 543
                 A      F E R        L  ++  + G+ R    H AGIV+      +    
Sbjct: 1004 T----AYGYAKHFDEERDLKARNAELDRLASGIRGVKRTTGQHPAGIVVVPDDMDIYDFT 1059

Query: 544  PM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+     DV +   +T ++   I    ++KFD LG    T+++   D        +D   
Sbjct: 1060 PVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDPTMIRHLQDL-----SGIDPLT 1113

Query: 601  IPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            IP DD     L ++               GTLG+ +  +  +R  LE  +P    +++ +
Sbjct: 1114 IPPDDPGVMSLFSSPKILGVTPEQIQSETGTLGVPEFGTRFVRGMLEETKPTTFAELLQI 1173

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
              L     +      +   NG  K+  +    D ++ +     +  E           +S
Sbjct: 1174 SGLSHGTDVWLGNAEDLVNNGTCKLKDVIGCRDNIMMDLIHWGVKPEVA---------FS 1224

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
              E+    R +  +    +               I      +  ++      Y F K+HA
Sbjct: 1225 TMESVRHGRGISDENMAIL----------KKNKNIPDWYIPSCLKI-----KYMFPKAHA 1269

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK----------------------- 803
             AY +++ + AW K +YP  +  A  ++  D  + +                        
Sbjct: 1270 TAYILMALRIAWFKVYYPEIYYTAYFSVRADLFDLVAMSHGKNTVKAAMKEIQDKGNDAS 1329

Query: 804  ----------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGTTTAR 851
                      +   +  +  I+I    ++     DFK+ D         A+ G+G   A+
Sbjct: 1330 AKDKSLLTVLEIANECLERGIKIKMVDIDQSEATDFKILDKHTILAPFNAVPGLGDNAAK 1389

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLE-SLVFAGALDC 893
             I+ A A+K F S ED   R    +      E + V  G  D 
Sbjct: 1390 QIVAARAEKKFLSKEDLAKRGKVSQTIMNYFEDNGVLEGMPDE 1432



 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%)

Query: 2   TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           T+  E     V L +H++ S L+   + ++ +       Q AIAITD  ++ S  E    
Sbjct: 325 TEKYEGEQKRVELHLHTNMSQLDATNAPSDFIKTAKKFGQKAIAITDHGDVQSFPEAYST 384

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
             A G + + G + ++     L + N     +     ++  V T
Sbjct: 385 GKATGTKILYGVEANMIDDHALLVINPAPMTYEDREFVIFDVET 428


>gi|295693139|ref|YP_003601749.1| DNA polymerase iii, alpha subunit [Lactobacillus crispatus ST1]
 gi|295031245|emb|CBL50724.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus ST1]
          Length = 1436

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 166/885 (18%), Positives = 308/885 (34%), Gaps = 144/885 (16%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L     G + L +LVS     D  +   R   S L  +   GL+  +G   
Sbjct: 606  RARPSHMTVLAKDQAGLKNLYKLVSIASTKDFFRI-PRTPKSDLARLHD-GLLYGSGCWQ 663

Query: 153  GPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHR---GYDRYRE--SQVVQLAY 205
            G +  A        A ++   +   ++     Y  L         D+  E    +++L  
Sbjct: 664  GDVFIAMMQKGYDEAREKAKFYDYLEVQPPATYSQLIADGLIKDEDQLHEIIENIIKLGK 723

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                P+VAT+++ ++ ++D     +L+A       S   R +  PD +  +  EM+  FS
Sbjct: 724  ELNKPVVATSDAHYVDQKDAIYRKILIAAQ----RSNPSRNKPQPDLHFYSTQEMLDAFS 779

Query: 266  DLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
             L E  A E  ++   + +  L    PI         +   +E +    +KA        
Sbjct: 780  FLGEDVAKEIVIDNTNKIADELSEIQPIKDGLYPPHIEHADEEMKKLTYDKAYE------ 833

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                +      +  + R+D ELN I    ++  +LI    +  + K+   VG  RGS   
Sbjct: 834  ----LYGKPLPKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGSVGS 888

Query: 384  SVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFCQ-----DRRDE 429
            S+ A    IT+++PL         ++S  FE         +PD D   C      D +D 
Sbjct: 889  SLVATMSGITEVNPLAPHYRCPNCKYSQFFENGEYGSGFDLPDKDCPKCGTPLVKDGQDI 948

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
                    +G ++V  I    S   +    +  R +              P++     ++
Sbjct: 949  PFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM------------FGPDNSYRAGTI 995

Query: 490  QAIADDSRFREARLADPSVD------RLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQ 541
              +AD + +  A+  D   D       L  ++  + G+ R    H AGIV+      +  
Sbjct: 996  ATVADKTAYGYAKHYDEEHDLKLRNAELDRLAAGVRGVKRTTGQHPAGIVVVPDDMDIYD 1055

Query: 542  LVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
              P+     DV +   +T ++   I    ++KFD LG    T+++   D        +D 
Sbjct: 1056 FTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDPTMIRHLQDL-----SGIDP 1109

Query: 599  SLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDII 644
              IP DD     L ++               GTLG+ +  +  +R  LE  +P    +++
Sbjct: 1110 LTIPPDDPGVMSLFSSPDILGVTPEQIQSETGTLGVPEFGTRFVRGMLEETKPTTFSELL 1169

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
             +  L     +      +    G  K+ ++    D ++ +     +  E           
Sbjct: 1170 QISGLSHGTDVWLGNAEDLINQGICKLKNVIGCRDNIMMDLIHWGVKPEVA--------- 1220

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            +S  E+    R +  +    +               I      +  ++      Y F K+
Sbjct: 1221 FSTMESVRHGRGISDENMAIL----------KKNKNIPDWYIPSCLKI-----KYMFPKA 1265

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK--------------------- 803
            HA AY +++ + AW K +YP  +  A  ++  D  + +                      
Sbjct: 1266 HATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFDLVAMSHGKNTVKAAMKEIQDKGND 1325

Query: 804  ------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGTTT 849
                        +   +  +  I+I    ++     DFK+ D         A+ G+G   
Sbjct: 1326 ASAKDKSLMTVLEIANECLERGIKIKMVDIDQSEATDFKILDKHTILAPFNAVPGLGDNA 1385

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL-ESLVFAGALDC 893
            A+ I+ A A+K F S ED   R    +       E+ V  G  D 
Sbjct: 1386 AKQIVAARAEKKFLSKEDLAKRGKVSQTIMNYFEENGVLEGMPDE 1430



 Score = 74.2 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%)

Query: 2   TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           T+  E  P  V L VH++ S ++   +  + +       Q AIAITD  ++ S  E    
Sbjct: 323 TEKYEGEPKRVELHVHTNMSQVDATNTPTDFIKTAKKFGQKAIAITDHGDVQSFPEAYSS 382

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
             A  ++ + G + ++     L + N     +     ++  V T
Sbjct: 383 GKALDMKILYGVEANMIDDHALLVLNPAPMTYEDREFVIFDVET 426


>gi|315641197|ref|ZP_07896274.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
 gi|315482964|gb|EFU73483.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
          Length = 1445

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 172/956 (17%), Positives = 324/956 (33%), Gaps = 202/956 (21%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            L  D+  ++   N  +   P      +LV T +G + L +L+S
Sbjct: 584  FVKEAMEH-----HKMFLHEDLNRHVGGENSYRAARP--FHATILVQTQKGLKNLFKLIS 636

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               +     +  RI  S L ++  EGLI+ +G   G +  A      + A+K    +   
Sbjct: 637  MSNVTYFHDKVPRIPRSELVKL-REGLIVGSGCDKGEVFVAMMQKGVEAAKKLAEFYDYI 695

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K ++   +   L ++        + ++Q+      P+VAT N  +L+EED     +
Sbjct: 696  EIMPKPVYAPLIEQELIKNEADLEEIITNLIQIGDELNKPVVATGNVHYLNEEDSIYRKI 755

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P  + +   +M+  F  L         + N   +  RC  +
Sbjct: 756  LINSMGG---ANPLNRHSLPKVHFRTTDDMLREFDFLGSERAQEVVVTNPNALVDRCETV 812

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            + V   +    I    ++I   + +  R K + G                    +RL+ E
Sbjct: 813  VPVKDKLYTPKIPGSEEEI--TQLSYTRAKELYG------------DPLPDIVEKRLEKE 858

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------ 398
            L+ I    FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL      
Sbjct: 859  LHSIIGNGFSVIYLISQKLVHKSNQDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYC 917

Query: 399  -----------------------------------RFSLLFERFLNPDRMSMPDFDIDFC 423
                                                  + FE FL      +PD D++F 
Sbjct: 918  PNCQYSEFYEDGSFGSGFDMPEKKCPKCDARLKKDGHDIPFETFLGFHGDKVPDIDLNFS 977

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + + E   Y +  +G + V +  T G++  K A   V                      
Sbjct: 978  GEYQPEAHNYTKVLFGEDYVYRAGTIGTVADKTAYGFVKGY------------------- 1018

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQ 541
                         R          +DRL   ++   G+ R    H  GI++      +  
Sbjct: 1019 ------------ERDHNLHFRGAEIDRL---AKGATGVKRTTGQHPGGIIVIPDYMEVYD 1063

Query: 542  LVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
              P+     D+ S+   T F+   I    ++K D LG    T+++   D        +D 
Sbjct: 1064 FTPIQFPADDIHSEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SGIDP 1117

Query: 599  SLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
              IP DD E   +               +  GTLGI +  +  +R  LE   P    +++
Sbjct: 1118 KTIPTDDPEVMKIFEGTDVLGVTQEAIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELL 1177

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
             +  L     +                 +   LI         VI  ++ +M +  + +G
Sbjct: 1178 QISGLSHGTDVWLG--------------NAEELIRRGEANLANVIGCRDDIM-VYLIHAG 1222

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
                 A  +  ++ K      D Q+E       +  I   + +           Y F K+
Sbjct: 1223 LDDGLAFKIMESVRKGKGIPDDWQEEMRKQNVPEWYIDSCLKIK----------YMFPKA 1272

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK--------------------- 803
            HAAAY +++ + A+ K ++P+ +  A  ++   + + +                      
Sbjct: 1273 HAAAYVLMALRVAYFKVYFPILYYCAYFSVRAADFDLVAMSKGKQAVKDLMKEINDKGMD 1332

Query: 804  ------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTA 850
                        + C +  +         +     + F +  + +     A+  +G + A
Sbjct: 1333 ASTKEKNLLTVLELCNEMLERGYNFGMIDLYKSDAENFVIDGDTLIAPFRAVPSLGLSVA 1392

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
            + I+EA  D PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1393 KQIVEARKDGPFLSKEDLANR---GKVSKTLIEYMTDNGVLKDLPDENQLSLFDML 1445



 Score = 85.8 bits (211), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 3/107 (2%)

Query: 2   TQYLEKSPS---FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
            Q ++++P     V L VHS+ S ++    + + + + A     AIAITD     S  + 
Sbjct: 326 AQRVDRAPEDQKRVELHVHSNMSQMDATNKVGDFVAQAAKWGHKAIAITDHGGAQSFPDA 385

Query: 59  SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
            Q A  AGI+ I G + +I         N   TP      +V  V T
Sbjct: 386 HQAAKKAGIKMIYGVEANIVDDGVQVAYNPKPTPLADATYVVFDVET 432


>gi|148543926|ref|YP_001271296.1| DNA polymerase III PolC [Lactobacillus reuteri DSM 20016]
 gi|184153322|ref|YP_001841663.1| DNA polymerase III PolC [Lactobacillus reuteri JCM 1112]
 gi|227364835|ref|ZP_03848882.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3]
 gi|325682539|ref|ZP_08162056.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A]
 gi|166918295|sp|A5VJD5|DPO3_LACRD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|148530960|gb|ABQ82959.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
            reuteri DSM 20016]
 gi|183224666|dbj|BAG25183.1| DNA polymerase III alpha subunit [Lactobacillus reuteri JCM 1112]
 gi|227070098|gb|EEI08474.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3]
 gi|324978378|gb|EGC15328.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A]
          Length = 1443

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 159/935 (17%), Positives = 319/935 (34%), Gaps = 177/935 (18%)

Query: 55   ALEFSQKACA-AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
              +F + A A   ++ +      ++  +  +              + +   T  G + L 
Sbjct: 582  LYKFLKDAEARYDVKYVDDLNKHMEENNAYR--------HARPFHVTIFAQTQAGLKNLF 633

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +LVS   + +   +  RI  + L +   EGL++ T  SSG +  A        A ++   
Sbjct: 634  KLVSLSNV-EYFYRVPRIPRTVLTKY-REGLLLGTACSSGEVFTAMMEKGYDQALEKARY 691

Query: 174  F-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +       K  +   L  ++    G+       +V+L    E  +VAT +  +L   D  
Sbjct: 692  YDFIEVQPKPNYAPLLEQHVIADEGHLEDILKNMVKLGDELEKTVVATGDVHYLDPHDGI 751

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFI 284
               +L+        +        P+ + +   EM++ F+ L E  A E  VE + + +  
Sbjct: 752  YRKILINSQGG---ANPLNRTERPEVHFRTTDEMLNEFAFLGEEKAHELVVENSNKIAAE 808

Query: 285  LQVH-APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            +  +  P+  +         ++E ++   N A       L           Q  + R++ 
Sbjct: 809  IDDNIRPVKDKLYPPHMKGAEQEIQDRTWNTARKWYGDPL----------PQLVQDRIEL 858

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            ELN I +  FS ++LI    +  + K+   VG  RGS   SV A    IT+++PL     
Sbjct: 859  ELNSIVKNGFSVHYLIAQRLVAKSNKDGYLVG-SRGSVGSSVVATLSGITEVNPLPPHYR 917

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                   + F+ FL      +PD D++F
Sbjct: 918  CPNCQFTHFYTQGEYSSGFDLPDKKCPKCGTLMVKDGHDIPFQTFLGFKGNKVPDIDLNF 977

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D +     Y++  +G + V +  T G++  K A   V                     
Sbjct: 978  SGDYQPIAHNYMKVLFGEKNVFRAGTIGTVADKTAYGYV--------------------- 1016

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLS 540
                   +A   D+  +E R A+        +++   G+ R    H AGI+I      + 
Sbjct: 1017 -------KAYERDTE-KEFRKAEED-----RLAKGATGVKRTTGQHPAGIIIVPDDMDIY 1063

Query: 541  QLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+             T F+   I    ++K D LG    T+++   D        +D
Sbjct: 1064 DFTPVQYPADDQTAAWETTHFDFHSIHD-NILKMDILGHDDPTMIRALQDL-----SGID 1117

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               IP DD     L ++   LG+ + +    +    G+       +  ++    P     
Sbjct: 1118 PQSIPMDDPGVMALFSSPKVLGVTEEQIQS-KTGTLGLPEFGTRFVRGMLEDTHPKNYSQ 1176

Query: 658  IVVYNNRKNGKEKI-VSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVL 713
            ++  +   +G      +   LI   +     VI  ++ +M       + S  S    + +
Sbjct: 1177 LLQISGLSHGTGVWLDNAQELIKQGIATIANVIGCRDNIMTDLIHYGMDSEISFQIMEHV 1236

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+               R I    +  + +      +        Y F ++HAAAY +++
Sbjct: 1237 RKG--------------RGIPDEWQEKMHEANVPQWYMDSCLKIKYMFPRAHAAAYVLMA 1282

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------------------ 803
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1283 LRIAYFKVYFPLVYYCAFFSVRADDFDVVAMSHGKDAVKQRMKEINDKGNDASAKEKNLL 1342

Query: 804  ---KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
               +   +  +   +     +      D+ +  + +     A+ G+G   A+ I+ A  +
Sbjct: 1343 TILELANEMLERGFKFKMVDIEKSDASDWLIDGDSLIAPFRAVPGLGLNVAKQIVAAREE 1402

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +PF S ED   R    K+++ +++ L     LD  
Sbjct: 1403 RPFLSKEDLAER---GKVSQTLIDFLTDNHVLDKL 1434



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++   S+  +  +      PAIA+TD  N+ +  E    A   GI+ + 
Sbjct: 340 VELHTHTTMSQMDATNSITELATRAHKWGHPAIAVTDHGNVQAFPEAFSVAQKTGIKMLY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++       + N+          ++  V T
Sbjct: 400 GMEANVVDDGIPLVYNENHEELAHQTYVIFDVET 433


>gi|238854744|ref|ZP_04645074.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 269-3]
 gi|238832534|gb|EEQ24841.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 269-3]
          Length = 1405

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 168/886 (18%), Positives = 308/886 (34%), Gaps = 148/886 (16%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L  T +G + + +LVS         +  R  +S L++   EGL+  +G   
Sbjct: 575  RAKPTHMTVLALTQKGLKNMYKLVSLAST-QYFYREPRTPISELRKY-REGLLFGSGCWK 632

Query: 153  GPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAY 205
            G +           A ++   +   ++     Y       L +           + +L  
Sbjct: 633  GDVFITMMQKGYDEAREKARFYDFLEVQPPAAYSQLIADELIKDEEQLEEILKNIYKLGQ 692

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
               +P+VAT +  +L+ ED    ++L+A       S  +R +  P  +  +  EM+  F+
Sbjct: 693  ELNIPVVATGDCHYLNPEDKIYREILIAAQ----RSNPNRNKSQPKLHFYSTQEMLDAFN 748

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFI---EKECDDIQKEEENELRNKAV 316
             + E       ++NT +IA     I  V + + P  I   +++  D+   +  EL  K +
Sbjct: 749  FMGEDVAKEIVIDNTNKIADEIEEIAPVKSGLYPPHIKDADQQMTDLTYNKAYELYGKPL 808

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                              +  + R++ ELN I    ++  +LI    +  + K+   VG 
Sbjct: 809  -----------------PKIVKDRIELELNSIISNGYAVIYLISQKLVAKSNKDGYLVG- 850

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFCQ--- 424
             RGS   S+ A    IT+++PL         ++S  FE         +PD     C    
Sbjct: 851  SRGSVGSSLVATMSGITEVNPLAPHYRCPKCKYSHFFENGEYGSGFDLPDKKCPECGTEL 910

Query: 425  --DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL-CKLIPN 481
              D +D         +G ++V  I    S   +    +  R +   +   +      I  
Sbjct: 911  VKDGQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNYIRVM---FGPANSFRAGTIST 966

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--L 539
                     A      F E R  +     L  ++    G+ R    H AGIV+      +
Sbjct: 967  VADKT----AYGYAKHFEEERNLNLRSAELDRLATGTSGVKRTTGQHPAGIVVVPDDMDI 1022

Query: 540  SQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
                P+             T F+   I    ++KFD LG    T+++   D        V
Sbjct: 1023 YDFTPVQYPADDLNAAWLTTHFDFHSIHD-NILKFDILGHDDPTMIRMLQDL-----SGV 1076

Query: 597  DLSLIPFDDHETYHLLT--------------TKGTLGIFQLESSGMRQALEGMQPDCIED 642
            D   IP DD     L +                GTLG+ +  +  +R  LE   P    +
Sbjct: 1077 DPMTIPPDDPGVMSLFSGTDILGVTPEQIASKTGTLGVPEFGTKFVRGMLEETNPTTFSE 1136

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++ +  L     +      +   NG  K+ ++    D ++ +     +  E         
Sbjct: 1137 LLQISGLSHGTDVWLGNAEDLVNNGTCKLKNVIGCRDNIMMDLIHWGVKPEVA------- 1189

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
              +S  E+    R +       +             N I      +  ++      Y F 
Sbjct: 1190 --FSTMESVRHGRGISDDDMAVL----------KKNNNIPDWYIPSCLKI-----KYMFP 1232

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------------KIK--- 803
            K+HA AY +++ + AW K +YPV +  +  ++  D  +                KI+   
Sbjct: 1233 KAHATAYILMALRIAWFKVYYPVIYYTSYFSVRADLFDLVAMSHGKNSVKAAIKKIQDQG 1292

Query: 804  --------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGT 847
                          +   +  +  I+I    VN    ++FK+ D+        A+ G+G 
Sbjct: 1293 NDASAKDKSLLTVLEIANECLERGIKIKMVDVNESEALNFKIVDDHTILAPFNAVPGLGD 1352

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE-SLVFAGALD 892
              A+ I+ A A++ F S ED  +R    +     LE + V  G  D
Sbjct: 1353 NAAKQIVAARAEQKFLSKEDLRTRGKVSQTIMDYLEVNGVLEGMPD 1398



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 42/104 (40%)

Query: 2   TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           T+  ++ P  V L +H+  S L+   +  + +       Q AIAITD  ++ S  E    
Sbjct: 292 TEKYQEEPKRVELHLHTIMSQLDATNTATDFISTAKKFGQKAIAITDHGDVQSFPEAYSA 351

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                ++ + G + ++     L + N     +     ++  V T
Sbjct: 352 GKKQKMKILYGLEANMVDDHALLVLNPASMTYENREFVIFDVET 395


>gi|300361904|ref|ZP_07058081.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03]
 gi|300354523|gb|EFJ70394.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03]
          Length = 1432

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 171/919 (18%), Positives = 316/919 (34%), Gaps = 214/919 (23%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L    EG + + +LVS         +  R   S L++   +GL+  +G   
Sbjct: 602  RAKPSHMSVLALNQEGLKNMYKLVSLASTK-YFYRIPRTPKSELRKYH-KGLLFGSGCWQ 659

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY----------DRYRESQVVQ 202
            G +  +        A ++   +        Y+ +Q    Y          D     +++Q
Sbjct: 660  GDVFISMMQKGYDEAREKARFYD-------YLEVQPPASYQTLIDDDLIKDEAELHEIIQ 712

Query: 203  ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
                L      P+VAT +S ++   +     +L+A       S  +R +  PD +  +  
Sbjct: 713  NIYKLGKELNKPVVATGDSHYVEPHEAIYRKILLAAQ----KSNPNRNKNLPDLHFYSTQ 768

Query: 259  EMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEEN 309
            EM+  FS L E       +ENT ++A +   I  + + + P  IE   +E  D+   +  
Sbjct: 769  EMLDAFSFLGEDVAKEIVIENTNKLADQIEEIAPIKSGLYPPHIENADQEMKDLTYNKAY 828

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL  K +                  +    R++ ELN I    ++  +LI    +  + K
Sbjct: 829  ELYGKPL-----------------PKIVEDRIELELNSIISNGYAVIYLISQRLVAKSNK 871

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFER-------------- 406
            +   VG  RGS   S+ A    IT+++PL         ++S  FE               
Sbjct: 872  DGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPKCKYSKFFENGEYGSGYDLPDKDC 930

Query: 407  ------------------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
                              FL      +PD D++F  D +     Y++  +G +   +  T
Sbjct: 931  PKCGTPLVKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNYIRVMFGPDNSFRAGT 990

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
              ++  K A   V                            +   D++      L +  +
Sbjct: 991  IATVADKTAYGYV----------------------------KHYEDENEL---HLRNAEL 1019

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFNMKWI 563
            DRL   +    G+ R    H AGIV+      +    P+             T F+   I
Sbjct: 1020 DRL---AAGASGVKRTTGQHPAGIVVVPDNMDIYDFTPVQYPADDLSAAWLTTHFDFHSI 1076

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT---------- 613
                ++KFD LG    T+++   D        +D   IP DD     L +          
Sbjct: 1077 HD-NILKFDILGHDDPTMIRMLQDL-----SGIDPLTIPPDDPGVMSLFSSPEILGVTPE 1130

Query: 614  ----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
                  GTLG+ +  +  +R  LE  +P    +++ +  L     +      N   NG  
Sbjct: 1131 QIQSKTGTLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAENLINNGTC 1190

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+ ++    D ++ +     +  E        ++ ++  E+    + +  +  + +    
Sbjct: 1191 KLKNVIGCRDNIMMDLIHWGVKPE--------VAFFT-MESVRHGKGISDENMKIL---- 1237

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                    KN        + +        Y F K+HA AY +++ + AW K +YPV + A
Sbjct: 1238 -------KKN----DKIPDWYIPSCLKIKYMFPKAHATAYILMALRIAWFKVYYPVIYYA 1286

Query: 790  ASMTLEMDNVEKIK---------------------------------KFCQDARQFNIQI 816
            +  ++  D  + +                                  +   +  +  I+I
Sbjct: 1287 SYFSVRADLFDLVAMSHGKNTVKAAMKEIQDKGMDVSAKDKSLLTVLEIANECLERGIKI 1346

Query: 817  MPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                VN    +DFK+ D+        A+ G+G   A+ I+ A A++ F S ED  +R   
Sbjct: 1347 KMVDVNESEAMDFKIIDDHTILAPFNAVPGLGDNAAKQIVAARAEQKFLSKEDLATRGKV 1406

Query: 875  KKLNRRVLESL-VFAGALD 892
             +      E+  V  G  D
Sbjct: 1407 SQTIMEYFENNGVLEGMPD 1425



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 41/94 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   + ++ +       Q AIAITD  ++ +  E      +  ++ + 
Sbjct: 329 VELHLHTNMSQLDATSTASDYIKTAKKFGQKAIAITDHADVQAFPEAYHTGASEKMKILY 388

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++     L + N  +  +     ++  V T
Sbjct: 389 GYEANMIDDHALLVLNPTEMDYRDHEYVIFDVET 422


>gi|227544953|ref|ZP_03975002.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300910016|ref|ZP_07127476.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112]
 gi|227185064|gb|EEI65135.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300892664|gb|EFK86024.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112]
          Length = 1443

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 159/935 (17%), Positives = 318/935 (34%), Gaps = 177/935 (18%)

Query: 55   ALEFSQKACA-AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
              +F + A A   ++ +      ++  +  +              + +   T  G + L 
Sbjct: 582  LYKFLKDAEARYDVKYVDDLNKHMEENNAYR--------HARPFHVTIFAQTQAGLKNLF 633

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +LVS   + +   +  RI  + L +   EGL++ T  SSG +  A        A ++   
Sbjct: 634  KLVSLSNV-EYFYRVPRIPRTVLTKY-REGLLLGTACSSGEVFTAMMEKGYDQALEKARY 691

Query: 174  FKKL---FGDRLYVNLQRHRGYDRYRESQV----VQLAYTHELPLVATNNSLFLSEEDYE 226
            +  +           L++H   D      +    V+L    E  +VAT +  +L   D  
Sbjct: 692  YDFIEVQPKPNYAPLLEQHVIADEDHLEDILKNMVKLGDELEKTVVATGDVHYLDPHDGI 751

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFI 284
               +L+        +        P+ + +   EM++ F+ L E  A E  VE + + +  
Sbjct: 752  YRKILINSQGG---ANPLNRTERPEVHFRTTDEMLNEFAFLGEEKAHELVVENSNKIAAE 808

Query: 285  LQVH-APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            +  +  P+  +         ++E ++   N A       L           Q  + R++ 
Sbjct: 809  IDDNIRPVKDKLYPPHMKGAEQEIQDRTWNTARKWYGDPL----------PQLVQDRIEL 858

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            ELN I +  FS ++LI    +  + K+   VG  RGS   SV A    IT+++PL     
Sbjct: 859  ELNSIVKNGFSVHYLIAQRLVAKSNKDGYLVG-SRGSVGSSVVATLSGITEVNPLPPHYR 917

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                   + F+ FL      +PD D++F
Sbjct: 918  CPNCQFTHFYTQGEYSSGFDLPDKKCPKCGTLMVKDGHDIPFQTFLGFKGNKVPDIDLNF 977

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D +     Y++  +G + V +  T G++  K A   V                     
Sbjct: 978  SGDYQPIAHNYMKVLFGEKNVFRAGTIGTVADKTAYGYV--------------------- 1016

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLS 540
                   +A   D+  +E R A+        +++   G+ R    H AGI+I      + 
Sbjct: 1017 -------KAYERDTE-KEFRKAEED-----RLAKGATGVKRTTGQHPAGIIIVPDDMDIY 1063

Query: 541  QLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+             T F+   I    ++K D LG    T+++   D        +D
Sbjct: 1064 DFTPVQYPADDQTAAWETTHFDFHSIHD-NILKMDILGHDDPTMIRALQDL-----SGID 1117

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               IP DD     L ++   LG+ + +    +    G+       +  ++    P     
Sbjct: 1118 PQSIPMDDPGVMALFSSPKVLGVTEEQIQS-KTGTLGLPEFGTRFVRGMLEDTHPKNYSQ 1176

Query: 658  IVVYNNRKNGKEKI-VSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVL 713
            ++  +   +G      +   LI   +     VI  ++ +M       + S  S    + +
Sbjct: 1177 LLQISGLSHGTGVWLDNAQELIKQGIATIANVIGCRDNIMTDLIHYGMDSEISFQIMEHV 1236

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+               R I    +  + +      +        Y F ++HAAAY +++
Sbjct: 1237 RKG--------------RGIPDEWQEKMHEANVPQWYMDSCLKIKYMFPRAHAAAYVLMA 1282

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------------------ 803
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1283 LRIAYFKVYFPLVYYCAFFSVRADDFDVVAMSHGKDAVKQRMKEINDKGNDASAKEKNLL 1342

Query: 804  ---KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
               +   +  +   +     +      D+ +  + +     A+ G+G   A+ I+ A  +
Sbjct: 1343 TILELANEMLERGFKFKMVDIEKSDASDWLIDGDSLIAPFRAVPGLGLNVAKQIVAAREE 1402

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +PF S ED   R    K+++ +++ L     LD  
Sbjct: 1403 RPFLSKEDLAER---GKVSQTLIDFLTDNHVLDKL 1434



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++   S+  +  +      PAIA+TD  N+ +  E    A   GI+ + 
Sbjct: 340 VELHTHTTMSQMDATNSITELATRAHKWGHPAIAVTDHGNVQAFPEAFSVAQKTGIKMLY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++       + N+          ++  V T
Sbjct: 400 GMEANVVDDGIPLVYNENHEELAHQTYVIFDVET 433


>gi|227878821|ref|ZP_03996728.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|227861569|gb|EEJ69181.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
          Length = 1436

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 169/889 (19%), Positives = 313/889 (35%), Gaps = 152/889 (17%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L     G + L +LVS     D  +   R   S L  +   GL+  +G   
Sbjct: 606  RARPSHMTVLAKDQAGLKNLYKLVSIASTKDFFRI-PRTPKSDLARLHD-GLLYGSGCWQ 663

Query: 153  GPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHR---GYDRYRE--SQVVQLAY 205
            G +  A        A ++   +   ++     Y  L         D+  E    +++L  
Sbjct: 664  GDVFIAMMQKGYDEAREKAKFYDYLEVQPPATYSQLIADGLIKDEDQLHEIIENIIKLGK 723

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                P+VAT+++ ++ ++D     +L+A       S   R +  PD +  +  EM+  FS
Sbjct: 724  ELNKPVVATSDAHYVDQKDAIYRKILIAAQ----RSNPSRNKPQPDLHFYSTQEMLDAFS 779

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
             L E       ++NT +IA   S I  +   + P  IE   ++++K   ++        L
Sbjct: 780  FLGEDVAKKIVIDNTNKIADELSEIQPIKDGLYPPHIEHADEEMKKLTYDKAYELYGKPL 839

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                           +  + R+D ELN I    ++  +LI    +  + K+   VG  RG
Sbjct: 840  --------------PKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRG 884

Query: 380  SGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFCQ-----D 425
            S   S+ A    IT+++PL         ++S  FE         +PD D   C      D
Sbjct: 885  SVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFENGEYGSGFDLPDKDCPKCGTPLVKD 944

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +D         +G ++V  I    S   +    +  R +              P++   
Sbjct: 945  GQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM------------FGPDNSYR 991

Query: 486  PVSLQAIADDSRFREARLADPSVD------RLLEISQKLEGLYRHASTHAAGIVIGDRP- 538
              ++  +AD + +  A+  D   D       L  ++  + G+ R    H AGIV+     
Sbjct: 992  AGTIATVADKTAYGYAKHYDEEHDLKLRNAELDRLAAGVRGVKRTTGQHPAGIVVVPDDM 1051

Query: 539  -LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+     DV +   +T ++   I    ++KFD LG    T+++   D       
Sbjct: 1052 DIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDPTMIRHLQDL-----S 1105

Query: 595  KVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCI 640
             +D   IP DD     L ++               GTLG+ +  +  +R  LE  +P   
Sbjct: 1106 GIDPLTIPPDDPGVMSLFSSPDILGVTPEQIQSETGTLGVPEFGTRFVRGMLEETKPTTF 1165

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             +++ +  L     +      +    G  K+ ++    D ++ +     +  E       
Sbjct: 1166 SELLQISGLSHGTDVWLGNAEDLINQGICKLKNVIGCRDNIMMDLIHWGVKPEVA----- 1220

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
                +S  E+    R +  +    +               I      +  ++      Y 
Sbjct: 1221 ----FSTMESVRHGRGISDENMAIL----------KKNKNIPDWYIPSCLKI-----KYM 1261

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK----------------- 803
            F K+HA AY +++ + AW K +YP  +  A  ++  D  + +                  
Sbjct: 1262 FPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFDLVAMSHGKNTVKAAMKEIQD 1321

Query: 804  ----------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGV 845
                            +   +  +  I+I    ++     DFK+ D         A+ G+
Sbjct: 1322 KGNDASAKDKSLMTVLEIANECLERGIKIKMVDIDQSEATDFKILDKHTILAPFNAVPGL 1381

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL-ESLVFAGALDC 893
            G   A+ I+ A A+K F S ED   R    +       E+ V  G  D 
Sbjct: 1382 GDNAAKQIVAARAEKKFLSKEDLAKRGKVSQTIMNYFEENGVLEGMPDE 1430



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%)

Query: 2   TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           T+  E  P  V L VH++ S ++   +  + +       Q AIAITD  ++ S  E    
Sbjct: 323 TEKYEGEPKRVELHVHTNMSQVDATNTPTDFIKTAKKFGQKAIAITDHGDVQSFPEAYSS 382

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
             A  ++ + G + ++     L + N     +     ++  V T
Sbjct: 383 GKALDMKILYGVEANMIDDHALLVLNPAPMTYEGREFVIFDVET 426


>gi|256849838|ref|ZP_05555269.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|256713327|gb|EEU28317.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
          Length = 1436

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 169/889 (19%), Positives = 313/889 (35%), Gaps = 152/889 (17%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L     G + L +LVS     D  +   R   S L  +   GL+  +G   
Sbjct: 606  RARPSHMTVLAKDQAGLKNLYKLVSIASTKDFFRI-PRTPKSDLARLHD-GLLYGSGCWQ 663

Query: 153  GPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHR---GYDRYRE--SQVVQLAY 205
            G +  A        A ++   +   ++     Y  L         D+  E    +++L  
Sbjct: 664  GDVFIAMMQKGYDEAREKAKFYDYLEVQPPATYSQLIADGLIKDEDQLHEIIENIIKLGK 723

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                P+VAT+++ ++ ++D     +L+A       S   R +  PD +  +  EM+  FS
Sbjct: 724  ELNKPVVATSDAHYVDQKDAIYRKILIAAQ----RSNPSRNKPQPDLHFYSTQEMLDAFS 779

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
             L E       ++NT +IA   S I  +   + P  IE   ++++K   ++        L
Sbjct: 780  FLGEDVAKKIVIDNTNKIADELSEIQPIKDGLYPPHIEHADEEMKKLTYDKAYELYGKPL 839

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                           +  + R+D ELN I    ++  +LI    +  + K+   VG  RG
Sbjct: 840  --------------PKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRG 884

Query: 380  SGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFCQ-----D 425
            S   S+ A    IT+++PL         ++S  FE         +PD D   C      D
Sbjct: 885  SVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFENGEYGSGFDLPDKDCPKCGTPLVKD 944

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +D         +G ++V  I    S   +    +  R +              P++   
Sbjct: 945  GQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM------------FGPDNSYR 991

Query: 486  PVSLQAIADDSRFREARLADPSVD------RLLEISQKLEGLYRHASTHAAGIVIGDRP- 538
              ++  +AD + +  A+  D   D       L  ++  + G+ R    H AGIV+     
Sbjct: 992  AGTIATVADKTAYGYAKHYDEEHDLKLRNAELDRLAAGVRGVKRTTGQHPAGIVVVPDDM 1051

Query: 539  -LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+     DV +   +T ++   I    ++KFD LG    T+++   D       
Sbjct: 1052 DIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDPTMIRHLQDL-----S 1105

Query: 595  KVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCI 640
             +D   IP DD     L ++               GTLG+ +  +  +R  LE  +P   
Sbjct: 1106 GIDPLTIPPDDPGVMSLFSSPDILGVTPEQIQSETGTLGVPEFGTRFVRGMLEETKPTTF 1165

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             +++ +  L     +      +    G  K+ ++    D ++ +     +  E       
Sbjct: 1166 SELLQISGLSHGTDVWLGNAEDLINQGICKLKNVIGCRDNIMMDLIHWGVKPEVA----- 1220

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
                +S  E+    R +  +    +               I      +  ++      Y 
Sbjct: 1221 ----FSTMESVRHGRGISDENMAIL----------KKNKNIPDWYIPSCLKI-----KYM 1261

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK----------------- 803
            F K+HA AY +++ + AW K +YP  +  A  ++  D  + +                  
Sbjct: 1262 FPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFDLVAMSHGKNTVKAAMKEIQD 1321

Query: 804  ----------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGV 845
                            +   +  +  I+I    ++     DFK+ D         A+ G+
Sbjct: 1322 KGNDASAKDKSLMTVLEIANECLERGIKIKMVDIDQSEATDFKILDKHTILAPFNAVPGL 1381

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL-ESLVFAGALDC 893
            G   A+ I+ A A+K F S ED   R    +       E+ V  G  D 
Sbjct: 1382 GDNAAKQIVAARAEKKFLSKEDLAKRGKVSQTIMNYFEENGVLEGMPDE 1430



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%)

Query: 2   TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           T+  E  P  V L VH++ S ++   +  + +       Q AIAITD  ++ S  E    
Sbjct: 323 TEKYEGEPKRVELHVHTNMSQVDATNTPTDFIKTAKKFGQKAIAITDHGDVQSFPEAYSS 382

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
             A  ++ + G + ++     L + N     +     ++  V T
Sbjct: 383 GKALDMKILYGVEANMIDDHALLVLNPAPMTYEGREFVIFDVET 426


>gi|291558576|emb|CBL37376.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing
            bacterium SSC/2]
          Length = 1470

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 170/940 (18%), Positives = 321/940 (34%), Gaps = 184/940 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +EF        I  +          DN+ +  +G+     +   ++LV    G   L  L
Sbjct: 600  VEFISMLKEKDITDLDQVNEF--ANDNVDLIKKGR-----MYHGIILVKNNTGRVNLNRL 652

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L +   +  R+  S + +   +GLI+ +   +G + +A     S      +++F 
Sbjct: 653  VSESHL-NYFNRRPRMPKSLINKY-RDGLIIGSACEAGELYQALLDERSDETIANIVSFY 710

Query: 176  KLFGDRLYVNLQRHRGYDRYRE-----------SQVVQLAYTHELPLVATNNSLFLSEED 224
                 +   N +   G +R               ++V L      P+VAT +  FL+ +D
Sbjct: 711  DYLEIQPVGNNEFMIGSERVENVNSIEDIQKFNQKIVDLGEQFHKPVVATCDVHFLNPDD 770

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCS 282
                 +L+A        Q          Y +   EM+  F+ L   +A E  +    + +
Sbjct: 771  AIYRSILLAGKGFKDADQ------QAPLYFRTTQEMLDEFAYLGSEKAKEVVITNTNKIN 824

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
             +++  +PI P        D  K     LR                 +         RL+
Sbjct: 825  DMIENISPIHPDKCPPVIPDSDKT----LREICYNRAHEIYGDDLPER------VTSRLE 874

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             ELN I    ++  ++I    +  +  +   VG  RGS   S  A    IT+++PL    
Sbjct: 875  KELNSIIGNGYAVMYIIAQKLVWDSNDHGYLVG-SRGSVGSSFAATMSGITEVNPLPAHY 933

Query: 400  --------------------------------------------FSLLFERFLNPDRMSM 415
                                                          + FE FL       
Sbjct: 934  ICPECHFVDFDSEQVQKYAKMGMSGFDMPDAYCPKCGAKMTKEGQDIPFETFLGFKGNKE 993

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  + + +   YV+  +G  +  +  T G+L  K A   V +            
Sbjct: 994  PDIDLNFSGEYQGKAHAYVEVIFGKGKAFRAGTIGTLAEKTAYGYVLKY----------- 1042

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI- 534
                                    E  ++      +  ++    G+ R    H  GI++ 
Sbjct: 1043 ----------------------LEERGISKRRC-EIERLALGCTGVKRTTGQHPGGIIVV 1079

Query: 535  -GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
              D+ +     +     D+ + +  T F    I++  L+K D LG    +++++  D   
Sbjct: 1080 PHDKEIYDFTAVQHPANDMNTPIITTHFEYHSIDQ-NLLKLDILGHDDPSMIRRMEDITG 1138

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD     L     TLGI   +  G      G+     + +I ++   
Sbjct: 1139 -----IDAQTIPMDDKGVMGLFHGTETLGITPEDIDGTPLGSLGVPEFGTDFVIQMLQDT 1193

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYS 706
             P    ++V  +   +G +  + +   LI+         I  ++ +M       L    S
Sbjct: 1194 HPQSFSDLVRISGLSHGTDVWLGNAQTLIENGDAVISTAICCRDDIMVYLINQGLEQEAS 1253

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
                + +R+   K + +E ++             +      + +    K   Y F K+HA
Sbjct: 1254 FKIMEGVRKG--KGLTDEQEQM------------MRDHNVPDWYIWSCKQIKYMFPKAHA 1299

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV-------------EKIK---------- 803
            AAY +++++ AW K ++P+ + AA  ++                  EK+           
Sbjct: 1300 AAYVMMAWRIAWYKVYHPLAYYAAYFSIRAKAFSYEDMCLGKERLDEKMSIIKNTPKHEV 1359

Query: 804  -----------KFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
                       K   +      +  P  +      DF+V D +I  +L +I G+G   A+
Sbjct: 1360 KNADLDLLREMKIADEMYARGYEFWPLDIYKAKAKDFQVIDGKIMPALTSIDGMGEKAAQ 1419

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             + EA+  +PF SLE+F +R  + +     ++ L   G L
Sbjct: 1420 QVEEAAKGEPFTSLENFRNRTKAPQACIEKMKELGIMGDL 1459



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           V L +H+  S  +  + + +I+++      PA+AITD   L  
Sbjct: 353 VELHLHTVMSDNDSVVQIKDIVNRAYEWGHPAVAITDHGVLQG 395


>gi|167766537|ref|ZP_02438590.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1]
 gi|167711660|gb|EDS22239.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1]
          Length = 1473

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 170/940 (18%), Positives = 321/940 (34%), Gaps = 184/940 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +EF        I  +          DN+ +  +G+     +   ++LV    G   L  L
Sbjct: 603  VEFISMLKEKDITDLDQVNEF--ANDNVDLIKKGR-----MYHGIILVKNNTGRVNLNRL 655

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L +   +  R+  S + +   +GLI+ +   +G + +A     S      +++F 
Sbjct: 656  VSESHL-NYFNRRPRMPKSLINKY-RDGLIIGSACEAGELYQALLDERSDETIANIVSFY 713

Query: 176  KLFGDRLYVNLQRHRGYDRYRE-----------SQVVQLAYTHELPLVATNNSLFLSEED 224
                 +   N +   G +R               ++V L      P+VAT +  FL+ +D
Sbjct: 714  DYLEIQPVGNNEFMIGSERVENVNSIEDIQKFNQKIVDLGEQFHKPVVATCDVHFLNPDD 773

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCS 282
                 +L+A        Q          Y +   EM+  F+ L   +A E  +    + +
Sbjct: 774  AIYRSILLAGKGFKDADQ------QAPLYFRTTQEMLDEFAYLGSEKAKEVVITNTNKIN 827

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
             +++  +PI P        D  K     LR                 +         RL+
Sbjct: 828  DMIENISPIHPDKCPPVIPDSDKT----LREICYNRAHEIYGDDLPER------VTSRLE 877

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             ELN I    ++  ++I    +  +  +   VG  RGS   S  A    IT+++PL    
Sbjct: 878  KELNSIIGNGYAVMYIIAQKLVWDSNDHGYLVG-SRGSVGSSFAATMSGITEVNPLPAHY 936

Query: 400  --------------------------------------------FSLLFERFLNPDRMSM 415
                                                          + FE FL       
Sbjct: 937  ICPECHFVDFDSEQVQKYAKMGMSGFDMPDAYCPKCGAKMTKEGQDIPFETFLGFKGNKE 996

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  + + +   YV+  +G  +  +  T G+L  K A   V +            
Sbjct: 997  PDIDLNFSGEYQGKAHAYVEVIFGKGKAFRAGTIGTLAEKTAYGYVLKY----------- 1045

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI- 534
                                    E  ++      +  ++    G+ R    H  GI++ 
Sbjct: 1046 ----------------------LEERGISKRRC-EIERLALGCTGVKRTTGQHPGGIIVV 1082

Query: 535  -GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
              D+ +     +     D+ + +  T F    I++  L+K D LG    +++++  D   
Sbjct: 1083 PHDKEIYDFTAVQHPANDMNTPIITTHFEYHSIDQ-NLLKLDILGHDDPSMIRRMEDITG 1141

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD     L     TLGI   +  G      G+     + +I ++   
Sbjct: 1142 -----IDAQTIPMDDKGVMGLFHGTETLGITPEDIDGTPLGSLGVPEFGTDFVIQMLQDT 1196

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYS 706
             P    ++V  +   +G +  + +   LI+         I  ++ +M       L    S
Sbjct: 1197 HPQSFSDLVRISGLSHGTDVWLGNAQTLIENGDAVISTAICCRDDIMVYLINQGLEQEAS 1256

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
                + +R+   K + +E ++             +      + +    K   Y F K+HA
Sbjct: 1257 FKIMEGVRKG--KGLTDEQEQM------------MRDHNVPDWYIWSCKQIKYMFPKAHA 1302

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV-------------EKIK---------- 803
            AAY +++++ AW K ++P+ + AA  ++                  EK+           
Sbjct: 1303 AAYVMMAWRIAWYKVYHPLAYYAAYFSIRAKAFSYEDMCLGKERLDEKMSIIKNTPKHEV 1362

Query: 804  -----------KFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
                       K   +      +  P  +      DF+V D +I  +L +I G+G   A+
Sbjct: 1363 KNADLDLLREMKIADEMYARGYEFWPLDIYKAKAKDFQVIDGKIMPALTSIDGMGEKAAQ 1422

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             + EA+  +PF SLE+F +R  + +     ++ L   G L
Sbjct: 1423 QVEEAAKGEPFTSLENFRNRTKAPQACIEKMKELGIMGDL 1462



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           V L +H+  S  +  + + +I+++      PA+AITD   L  
Sbjct: 356 VELHLHTVMSDNDSVVQIKDIVNRAYEWGHPAVAITDHGVLQG 398


>gi|262046916|ref|ZP_06019876.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US]
 gi|260572898|gb|EEX29458.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US]
          Length = 1436

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 169/889 (19%), Positives = 313/889 (35%), Gaps = 152/889 (17%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L     G + L +LVS     D  +   R   S L  +   GL+  +G   
Sbjct: 606  RARPSHMTVLAKDQAGLKNLYKLVSIASTKDFFRI-PRTPKSDLARLHD-GLLYGSGCWQ 663

Query: 153  GPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHR---GYDRYRE--SQVVQLAY 205
            G +  A        A ++   +   ++     Y  L         D+  E    +++L  
Sbjct: 664  GDVFIAMMQKGYDEAREKAKFYDYLEVQPPATYSQLIADGLIKDEDQLHEIIENIIKLGK 723

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                P+VAT+++ ++ ++D     +L+A       S   R +  PD +  +  EM+  FS
Sbjct: 724  ELNKPVVATSDAHYVDQKDAIYRKILIAAQ----RSNPSRNKPQPDLHFYSTQEMLDAFS 779

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
             L E       ++NT +IA   S I  +   + P  IE   ++++K   ++        L
Sbjct: 780  FLGEDVAKKIVIDNTNKIADELSEIQPIKDGLYPPHIEHADEEMKKLTYDKAYELYGKPL 839

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                           +  + R+D ELN I    ++  +LI    +  + K+   VG  RG
Sbjct: 840  --------------PKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRG 884

Query: 380  SGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFCQ-----D 425
            S   S+ A    IT+++PL         ++S  FE         +PD D   C      D
Sbjct: 885  SVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFENGEYGSGFDLPDKDCPKCGTPLVKD 944

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +D         +G ++V  I    S   +    +  R +              P++   
Sbjct: 945  GQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM------------FGPDNSYR 991

Query: 486  PVSLQAIADDSRFREARLADPSVD------RLLEISQKLEGLYRHASTHAAGIVIGDRP- 538
              ++  +AD + +  A+  D   D       L  ++  + G+ R    H AGIV+     
Sbjct: 992  AGTIATVADKTAYGYAKHYDEEHDLKLRNAELDRLAAGVRGVKRTTGQHPAGIVVVPDDM 1051

Query: 539  -LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+     DV +   +T ++   I    ++KFD LG    T+++   D       
Sbjct: 1052 DIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDPTMIRHLQDL-----S 1105

Query: 595  KVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCI 640
             +D   IP DD     L ++               GTLG+ +  +  +R  LE  +P   
Sbjct: 1106 GIDPLTIPPDDPGVMSLFSSPDILGVTPEQIQSETGTLGVPEFGTRFVRGMLEETKPTTF 1165

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             +++ +  L     +      +    G  K+ ++    D ++ +     +  E       
Sbjct: 1166 SELLQISGLSHGTDVWLGNAEDLINQGICKLKNVIGCRDNIMMDLIHWGVKPEVA----- 1220

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
                +S  E+    R +  +    +               I      +  ++      Y 
Sbjct: 1221 ----FSTMESVRHGRGISDENMAIL----------KKNKNIPDWYIPSCLKI-----KYM 1261

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK----------------- 803
            F K+HA AY +++ + AW K +YP  +  A  ++  D  + +                  
Sbjct: 1262 FPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFDLVAMSHGKNTVKAAMKEIQD 1321

Query: 804  ----------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGV 845
                            +   +  +  I+I    ++     DFK+ D         A+ G+
Sbjct: 1322 KGNDASAKDKSLMTVLEIANECLERGIKIKMVDIDQSEATDFKILDKHTILAPFNAVPGL 1381

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL-ESLVFAGALDC 893
            G   A+ I+ A A+K F S ED   R    +       E+ V  G  D 
Sbjct: 1382 GDNAAKQIVAARAEKKFLSKEDLAKRGKVSQTIMNYFEENGVLEGMPDE 1430



 Score = 74.2 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%)

Query: 2   TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           T+  E  P  V L VH++ S ++   +  + +       Q AIAITD  ++ S  E    
Sbjct: 323 TEKYEGEPKRVELHVHTNMSQVDATNTPTDFIKTAKKFGQKAIAITDHGDVQSFPEAYSS 382

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
             A  ++ + G + ++     L + N     +     ++  V T
Sbjct: 383 GKALDMKILYGVEANMIDDHALLVLNPAPMTYKDREFVIFDVET 426


>gi|256843343|ref|ZP_05548831.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN]
 gi|293381212|ref|ZP_06627220.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            crispatus 214-1]
 gi|256614763|gb|EEU19964.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN]
 gi|290922252|gb|EFD99246.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            crispatus 214-1]
          Length = 1436

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 169/889 (19%), Positives = 313/889 (35%), Gaps = 152/889 (17%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L     G + L +LVS     D  +   R   S L  +   GL+  +G   
Sbjct: 606  RARPSHMTVLAKDQAGLKNLYKLVSIASTKDFFRI-PRTPKSDLARLHD-GLLYGSGCWQ 663

Query: 153  GPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHR---GYDRYRE--SQVVQLAY 205
            G +  A        A ++   +   ++     Y  L         D+  E    +++L  
Sbjct: 664  GDVFIAMMQKGYDEAREKAKFYDYLEVQPPATYSQLIADGLIKDEDQLHEIIENIIKLGK 723

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                P+VAT+++ ++ ++D     +L+A       S   R +  PD +  +  EM+  FS
Sbjct: 724  ELNKPVVATSDAHYVDQKDAIYRKILIAAQ----RSNPSRNKPQPDLHFYSTQEMLDAFS 779

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
             L E       ++NT +IA   S I  +   + P  IE   ++++K   ++        L
Sbjct: 780  FLGEDVAKKIVIDNTNKIADELSEIQPIKDGLYPPHIEHADEEMKKLTYDKAYELYGKPL 839

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                           +  + R+D ELN I    ++  +LI    +  + K+   VG  RG
Sbjct: 840  --------------PKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRG 884

Query: 380  SGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFCQ-----D 425
            S   S+ A    IT+++PL         ++S  FE         +PD D   C      D
Sbjct: 885  SVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFENGEYGSGFDLPDKDCPKCGTPLVKD 944

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +D         +G ++V  I    S   +    +  R +              P++   
Sbjct: 945  GQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM------------FGPDNSYR 991

Query: 486  PVSLQAIADDSRFREARLADPSVD------RLLEISQKLEGLYRHASTHAAGIVIGDRP- 538
              ++  +AD + +  A+  D   D       L  ++  + G+ R    H AGIV+     
Sbjct: 992  AGTIATVADKTAYGYAKHYDEEHDLKLRNAELDRLAAGVRGVKRTTGQHPAGIVVVPDDM 1051

Query: 539  -LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+     DV +   +T ++   I    ++KFD LG    T+++   D       
Sbjct: 1052 DIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDPTMIRHLQDL-----S 1105

Query: 595  KVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCI 640
             +D   IP DD     L ++               GTLG+ +  +  +R  LE  +P   
Sbjct: 1106 GIDPLTIPPDDPGVMSLFSSPDILGVTPEQIQSETGTLGVPEFGTRFVRGMLEETKPTTF 1165

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             +++ +  L     +      +    G  K+ ++    D ++ +     +  E       
Sbjct: 1166 SELLQISGLSHGTDVWLGNAEDLINQGICKLKNVIGCRDNIMMDLIHWGVKPEVA----- 1220

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
                +S  E+    R +  +    +               I      +  ++      Y 
Sbjct: 1221 ----FSTMESVRHGRGISDENMAIL----------KKNKNIPDWYIPSCLKI-----KYM 1261

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK----------------- 803
            F K+HA AY +++ + AW K +YP  +  A  ++  D  + +                  
Sbjct: 1262 FPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFDLVAMSHGKNTVKAAMKEIQD 1321

Query: 804  ----------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGV 845
                            +   +  +  I+I    ++     DFK+ D         A+ G+
Sbjct: 1322 KGNDASAKDKSLMTVLEIANECLERGIKIKMVDIDQSEATDFKILDKHTILAPFNAVPGL 1381

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL-ESLVFAGALDC 893
            G   A+ I+ A A+K F S ED   R    +       E+ V  G  D 
Sbjct: 1382 GDNAAKQIVAARAEKKFLSKEDLAKRGKVSQTIMNYFEENGVLEGMPDE 1430



 Score = 74.2 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%)

Query: 2   TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           T+  E  P  V L VH++ S ++   +  + +       Q AIAITD  ++ S  E    
Sbjct: 323 TEKYEGEPKRVELHVHTNMSQVDATNTPTDFIKTAKKFGQKAIAITDHGDVQSFPEAYSS 382

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
             A  ++ + G + ++     L + N     +     ++  V T
Sbjct: 383 GKALDMKILYGVEANMIDDHALLVLNPAPMTYEDREFVIFDVET 426


>gi|256851261|ref|ZP_05556650.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 27-2-CHN]
 gi|260660685|ref|ZP_05861600.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 115-3-CHN]
 gi|282934729|ref|ZP_06339972.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 208-1]
 gi|297206128|ref|ZP_06923523.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16]
 gi|256616323|gb|EEU21511.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 27-2-CHN]
 gi|260548407|gb|EEX24382.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 115-3-CHN]
 gi|281301304|gb|EFA93605.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 208-1]
 gi|297149254|gb|EFH29552.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16]
          Length = 1439

 Score =  425 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 166/876 (18%), Positives = 304/876 (34%), Gaps = 147/876 (16%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L  T +G + + +LVS         +  R  +S L++   EGL+  +G   
Sbjct: 609  RAKPAHMTVLALTQKGLKNMYKLVSLAST-QYFYREPRTPISELRKY-REGLLFGSGCWK 666

Query: 153  GPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAY 205
            G +           A ++   +   ++     Y       L +           + +L  
Sbjct: 667  GDVFITMMQKGYDEAREKAKFYDFLEVQPPAAYSQLIADELIKDENQLEEILKNIYKLGQ 726

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
               +P+VAT +  +L+ ED    ++L+A       S  +R +  P  +  +  EM+  FS
Sbjct: 727  ELNIPVVATGDCHYLNPEDKIYREILIAAQ----RSNPNRNKPQPKLHFYSTQEMLDAFS 782

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFI---EKECDDIQKEEENELRNKAV 316
             + E       ++NT +IA     I  V + + P  I   +++  D+   +  EL  K +
Sbjct: 783  FMGEDIAKEIVIDNTNKIADEIEDIAPVKSGLYPPHIKDADQQMTDLTYNKAYELYGKPL 842

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                              +  + R++ ELN I    ++  +LI    +  + K+   VG 
Sbjct: 843  -----------------PKIVKDRIELELNSIISNGYAVIYLISQKLVAKSNKDGYLVG- 884

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFCQ--- 424
             RGS   S+ A    IT+++PL         ++S  FE         +PD     C    
Sbjct: 885  SRGSVGSSLVATMSGITEVNPLAPHYRCPKCKYSHFFENGEYGSGFDLPDKKCPECGTEL 944

Query: 425  --DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL-CKLIPN 481
              D +D         +G ++V  I    S   +    +  R +   +   +      I  
Sbjct: 945  VKDGQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNYIRVM---FGPANSFRAGTIST 1000

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--L 539
                     A      F E R  +     L  ++    G+ R    H AGIV+      +
Sbjct: 1001 VADKT----AYGYAKHFEEERNLNLRSAELDRLATGTSGVKRTTGQHPAGIVVVPDDMDI 1056

Query: 540  SQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
                P+             T F+   I    ++KFD LG    T+++   D        V
Sbjct: 1057 YDFTPVQYPADDLNAAWLTTHFDFHSIHD-NILKFDILGHDDPTMIRMLQDL-----SGV 1110

Query: 597  DLSLIPFDDHETYHLLT--------------TKGTLGIFQLESSGMRQALEGMQPDCIED 642
            D   IP DD     L +                GTLG+ +  +  +R  LE   P    +
Sbjct: 1111 DPMTIPPDDPGVMSLFSGTDILGVTPEQIASKTGTLGVPEFGTKFVRGMLEETNPTTFSE 1170

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++ +  L     +      +   NG  K+ ++    D ++ +     +  E         
Sbjct: 1171 LLQISGLSHGTDVWLGNAEDLVNNGTCKLKNVIGCRDNIMMDLIHWGVKPEVA------- 1223

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
              +S  E+    R +       +             N I      +  ++      Y F 
Sbjct: 1224 --FSTMESVRHGRGISDDDMAVL----------KKNNNIPDWYIPSCLKI-----KYMFP 1266

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------------KIK--- 803
            K+HA AY +++ + AW K +YPV +  +  ++  D  +                KI+   
Sbjct: 1267 KAHATAYILMALRIAWFKVYYPVIYYTSYFSVRADLFDLVAMSHGKNSVKAAIKKIQDQG 1326

Query: 804  --------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGT 847
                          +   +  +  I+I    VN    ++FK+ D+        A+ G+G 
Sbjct: 1327 NDASAKDKSLLTVLEIANECLERGIKIKMVDVNESEALNFKIIDDHTILAPFNAVPGLGD 1386

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
              A+ I+ A A++ F S ED  +R    +     LE
Sbjct: 1387 NAAKQIVAARAEQKFLSKEDLRTRGKVSQTIMDYLE 1422



 Score = 67.7 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 40/104 (38%)

Query: 2   TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           T+  E     V L +H+  S L+   +  + +       Q AIAITD  ++ S  E    
Sbjct: 326 TEKYEGDKKRVELHLHTIMSQLDATNTATDFISTAKKFGQKAIAITDHGDVQSFPEAYSA 385

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                ++ + G + ++     L + N     +     ++  V T
Sbjct: 386 GKKQEMKILYGLEANMVDDHALLVLNPAPMTYENREFVIFDVET 429


>gi|148269487|ref|YP_001243947.1| DNA polymerase III PolC [Thermotoga petrophila RKU-1]
 gi|281411795|ref|YP_003345874.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
 gi|166217457|sp|A5IJJ8|DPO3_THEP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|147735031|gb|ABQ46371.1| DNA polymerase III catalytic subunit, PolC type [Thermotoga
            petrophila RKU-1]
 gi|281372898|gb|ADA66460.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
          Length = 1367

 Score =  425 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 182/941 (19%), Positives = 328/941 (34%), Gaps = 201/941 (21%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            L F +     GI  +   +   D  D   +               +LV   +G + L +L
Sbjct: 514  LRFVEMMKKIGITKLSEIENLKDTIDYTALK---------PFHCTILVQNKKGLKNLYKL 564

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ-VAEKRLLTF 174
            VS  Y+        RI  S L E   EGL++ +   SG + RA    +S    E+    +
Sbjct: 565  VSDSYIK-YFYGVPRILKSALIE-NREGLLVGSACISGELGRAALEGASDSELEEIAKFY 622

Query: 175  KKLFGDRLYVNLQRHRGYDRYRES----QVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              +    L V  +     DR R      ++ ++A      +V T +  FL  ED      
Sbjct: 623  DYIEVMPLDVIAEDEEDLDRERLKEVYRRLYRIAKKLNKFVVMTGDVHFLDPEDARGRAA 682

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS----IFSDLPEALENTVEIARRCSFILQ 286
            L+A   +            P  YL+   EM+     IF D   A E  +E   R + +++
Sbjct: 683  LLAPQGNRNFEN------QPALYLRTTEEMLEKAMEIFEDEEIAREVVIENPNRIADMIE 736

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               P+  +      ++  +   +    +A            I      +  ++R++ ELN
Sbjct: 737  EVQPLEKKLHPPIIENADEIVRSLTMKRAYE----------IYGDPLPEIVQKRVERELN 786

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I    ++  +LI  + +Q +  +   VG  RGS   S+ A  L IT+++PL        
Sbjct: 787  AIINHGYAVLYLIAQELVQKSMSDGYVVG-SRGSVGSSLVANLLGITEVNPLPPHYRCPE 845

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                                + FE F+  +   +PD D++F  +
Sbjct: 846  CKYFKVVEDDRYGAGYDLPDKKCPVCGAPLRKDGHDIPFETFMGFEGDKVPDIDLNFSGE 905

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             ++   R+V+  +G + V +  T  ++  K+A   VG           +L K        
Sbjct: 906  YQERAHRFVEELFGKDHVYRAGTINTIAEKSA---VGYVRSYEEKTGKKLRKA------- 955

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLV 543
                                  ++RL+ +   + G+ R    H  G++I  +   +    
Sbjct: 956  ---------------------EMERLVSM---ITGVKRTTGQHPGGLMIIPKDKEVYDFT 991

Query: 544  PMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+     D  + +  T F  + I    L+K D LG    T ++   D        +D   
Sbjct: 992  PIQYPANDRNAGVFTTHFAYETIHD-DLVKIDALGHDDPTFIKMLKDLTG-----IDPMT 1045

Query: 601  IPFDDHETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            IP DD +T                L +  GT GI +  +  +R  L   +P    +++ +
Sbjct: 1046 IPMDDPDTLAIFSSVKPLGVDPVELESDVGTYGIPEFGTEFVRGMLVETRPKSFAELVRI 1105

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ---IAQLLS 703
              L       ++ + N R             I+    +   VI  ++ +M       +  
Sbjct: 1106 SGLSHGT---DVWLNNAR-----------DWINLGYAKLSDVISCRDDIMNFLIHKGMEP 1151

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
              +    + +R+   K I EEM+ +            + K      F    K   Y F K
Sbjct: 1152 SLAFKIMENVRKG--KGITEEMESE------------MRKLKVPEWFIESCKRIKYLFPK 1197

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF------------------ 805
            +HA AY  ++++ A+ K HYP++F AA  T++ D  + +                     
Sbjct: 1198 AHAVAYVSMAFRIAYFKVHYPLQFYAAYFTIKGDQFDPVLVLKGKEAIKRRLRELKAMTG 1257

Query: 806  --------------CQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                            +        +PP +  +    F +  N +      + G+G + A
Sbjct: 1258 KDVQKKNEESVLEVVLEMILRGFSFLPPDIFKSDAKKFLIEGNSLRIPFNKLPGLGDSVA 1317

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I+ A  +KPF S+ED   R    K +  ++ SL   G+L
Sbjct: 1318 ESIVRAREEKPFTSVEDLMKRTKVNKNHIELMRSLGVLGSL 1358



 Score = 91.6 bits (226), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 2   TQYLEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            + ++ SP   V L  H+ +S  +    +N  + +      PA+A+TD  N+ +   F  
Sbjct: 260 AKRMDNSPVKRVELHAHTKFSDQDAITDVNEYVKRAKEWGFPAVALTDHGNVQAIPYFYD 319

Query: 61  KACAAGIQPII 71
            A  AGI+PI 
Sbjct: 320 AAKEAGIKPIF 330


>gi|28210957|ref|NP_781901.1| DNA polymerase III PolC [Clostridium tetani E88]
 gi|32469700|sp|Q895K2|DPO3_CLOTE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|28203396|gb|AAO35838.1| DNA polymerase III, alpha chain [Clostridium tetani E88]
          Length = 1427

 Score =  425 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 181/991 (18%), Positives = 340/991 (34%), Gaps = 228/991 (23%)

Query: 36   IAADQQPAIAITDTNNLFSALEFSQKACAAG---------IQPIIGCQLDIDMQDNLKMT 86
                  P   + + +         + A   G         ++      L++  ++  K  
Sbjct: 544  AKHLGIP---LLNHH------RAVEDAKTTGDILLKAFEDLKDKEIMNLNMLNEEYFKNQ 594

Query: 87   NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146
            +  K+P      +++LV    G + L +L+S  +L +   +  R+  S + +   EGL++
Sbjct: 595  DIKKSP---TYHVIILVKNKIGLKNLYKLISESHL-NHFYKKPRMPKSLINKY-REGLMI 649

Query: 147  LTGGSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYR--ES 198
             +   +G + +    + S+   K +++F      + +  +   +     +  +  R    
Sbjct: 650  GSACEAGQVYKEVLMDKSKEELKEVISFYDYLEIQPIKNNYFMIRNGIVKDEEELRDINK 709

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++  LA  + +P+VAT +  FL ++D     +LMA    +           P  YL+   
Sbjct: 710  KIYNLAEENNMPVVATCDVHFLDKKDEVFRKILMAGQGFSDAEN------QPPLYLRTTD 763

Query: 259  EMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            EM+  F  L +       + NTV+IA     I  +     P  IE          E E+R
Sbjct: 764  EMLKEFEYLGKEKAYKAVVTNTVKIADSIDNIKPIPDETFPPKIEGS--------EEEVR 815

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
               +        +         +   +RL+ ELN I    ++  +LI    +  + ++  
Sbjct: 816  KMTIEKAHSIYGE------VLPEIVEKRLEKELNSIINNGYAVLYLIAHKLVDKSVQDGY 869

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLR--------------------------------- 399
             VG  RGS   S+ A    IT+++ L                                  
Sbjct: 870  LVG-SRGSVGSSLVATMTDITEVNGLPPHYVCPGCKYNEFITDGSVSSGADLPDKNCPNC 928

Query: 400  --------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                      + FE FL  +    PD D++F  + +  V +Y +  +G  +V +  T G+
Sbjct: 929  GVLLSKDGHDIPFETFLGFEGDKEPDIDLNFSGEYQAVVHKYTEVLFGEGKVFKAGTIGT 988

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            +  K A   V + +                             D   R+A         +
Sbjct: 989  IAEKTAYGFVKKYIS--------------------------EKDLNVRQA--------EI 1014

Query: 512  LEISQKLEGLYRHASTHAAGIVIG--DRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKA 566
              ++    G+ R    H  GI++   D  +    P+ R       D+  T F+   I   
Sbjct: 1015 ERLTLGCSGVKRTTGQHPGGIMVVPQDNEIFNFTPIQRPADDNDTDIITTHFDYHSI-SG 1073

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-------------- 612
             L+K D LG    T+L+   D        VD   IP  D +   L               
Sbjct: 1074 RLLKLDILGHDDPTVLRMLQDLTG-----VDPKKIPLADPKVMSLFTSPKALGVNAEELK 1128

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
               GT G+ +  +  +RQ L   QP+   D++ +  L       ++ + N +        
Sbjct: 1129 CEVGTYGLPEFGTKFVRQMLVDTQPNSFSDLVRISGLSHGT---DVWLNNAQ-------- 1177

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMD-KQ 728
                 I       +  I  ++ +M       L    + +  + +R+   K + EE +   
Sbjct: 1178 ---YYIKEGYTTLKDCIATRDDIMTYLIQKDLPPKIAFTIMEKVRKG--KGLTEEHEAIM 1232

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E  + G              +    K   Y F K HA AY +++ + A+ K +YP  + 
Sbjct: 1233 REHDVPG-------------WYIESCKKIKYMFPKGHAVAYVMMAVRIAYFKVYYPTAYY 1279

Query: 789  AASMTLEMDNVEK---------------------------------IKKFCQDARQFNIQ 815
            A   ++   + +                                  + + C +     I+
Sbjct: 1280 ATYFSVRASDFDAETVFKGEEAILNKIDEINSLGNNVTQKDKGLLTVLEICHEMNLRGIK 1339

Query: 816  IMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
             +   +       F + +  I   L+AI+GVG   A++I+EA  +  F S ED   R   
Sbjct: 1340 FLKADLYKSNASKFLIEEEGIRIPLSAIQGVGENAAKNIVEAREEGEFISKEDLNKR--- 1396

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
             K  + V+E+L   G L     S    L +L
Sbjct: 1397 GKATKTVIENLENHGCLRGLPESNQLSLFNL 1427



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++G  S  +++ + A     A+AITD   + +  E  + A    I+ I 
Sbjct: 328 VELHLHTKMSAMDGMNSAESLIKRAAKWGHKAVAITDHGVVQAYPEAMEAAKKYNIKIIY 387

Query: 72  GC 73
           G 
Sbjct: 388 GV 389


>gi|269956241|ref|YP_003326030.1| DNA polymerase III subunit alpha [Xylanimonas cellulosilytica DSM
            15894]
 gi|269304922|gb|ACZ30472.1| DNA polymerase III, alpha subunit [Xylanimonas cellulosilytica DSM
            15894]
          Length = 1185

 Score =  425 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 144/559 (25%), Positives = 258/559 (46%), Gaps = 58/559 (10%)

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
            +++++++++   L RH   H+ G+V+ DRP+ ++ P+         V Q++ +    AGL
Sbjct: 596  EQVIDLAERFLRLPRHLGIHSGGMVMCDRPVIEVCPVEWARMEGRTVLQWDKEDCADAGL 655

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            +KFD LGL  LT ++ + + +  R   ++ L  +P DD   Y LL    T+G+FQ+ES  
Sbjct: 656  VKFDLLGLGMLTAIRYAFEGIEARTGERLQLHHLPEDDPAVYDLLCAADTVGVFQVESRA 715

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
                L  ++P    DI+  V+L RPGPI   ++  +  R+N ++K+   HPL++  L  T
Sbjct: 716  QMATLPRLRPRNFYDIVVEVALIRPGPIQGNSVNPFIERRNKRQKVTYPHPLLEKSLSRT 775

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKT 744
             GV ++QEQ+MQ+A  ++G+S +E+D LRRAM  K+  E M+  + R + G +KNG+   
Sbjct: 776  LGVPLFQEQLMQMAIDVAGFSPAESDRLRRAMGSKRSLERMEALRGRLMEGMTKNGVPPD 835

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +   I+  L  FAD+GF +SHA ++A + Y ++W+K H+P  F A  +  +       + 
Sbjct: 836  VQEEIYGKLKAFADFGFPESHAYSFAFLVYASSWLKVHHPAAFYAGLLAAQPMGFYSPQS 895

Query: 805  FCQDARQFNIQIMPPSVNTPCV------------------------DFKVGDN-----RI 835
               DAR+  + ++ P +                             D + G +      +
Sbjct: 896  LVADARRHGVTVLRPDLGASAALACVERLPDDAPLEPERIPLPRSPDPRFGPDPDLRLAV 955

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               LA ++ +GT  A  I+    A+ PF  L D   RVD        LE+L  AGA +  
Sbjct: 956  RQGLAEVRSIGTDLAESIVAERSANGPFRDLRDLVRRVDLT---TPQLEALATAGATESL 1012

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            G  R + L +   +               + +     G   +  TL   S   ++V    
Sbjct: 1013 GVGRREALWAAGAL----------GQEGPDTLEGVSVGV--EAPTLPGMSDVETTV---A 1057

Query: 955  EQRVLGFY--FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            +    G     S  P+++ +  L + G+     +  T  G  I +  ++  +Q+  T  G
Sbjct: 1058 DSWATGVTPGLS--PVELVRDSLTRAGVVTVGRANVTEDGRRIAVGGVITHRQRPGTAGG 1115

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
              + +++  +         
Sbjct: 1116 --VTFLSVEDETGLLNVVC 1132



 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 141/494 (28%), Positives = 219/494 (44%), Gaps = 17/494 (3%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           + SP +  L  HSS+S L+GA     +  + A     A+A+TD + L+  +  SQ A + 
Sbjct: 3   DPSPRYAELHAHSSFSFLDGASHPEELAAEAARLGLSALAVTDHDGLYGVVRHSQTAASV 62

Query: 66  GIQPIIGCQLD------IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            ++ + G +L         +     +      P P    +++L   A+GY RL   ++  
Sbjct: 63  RLRTVFGAELHLPVPPGPGVGPRPVLDPPTGIPDPRAEHLLVLARGADGYARLSSAIAAA 122

Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF- 178
           +L    K         L E      ++LTG   G + RA     +  A + L     LF 
Sbjct: 123 HLEAGVKGKATYHPERLGEQAAGEWLVLTGCRKGSVRRALAAEGTGGARRELDRLVALFG 182

Query: 179 GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-H 236
            + + V +       D      +  LA+   LPLVAT N+ +    D      L AV   
Sbjct: 183 HENVAVEITATGDPRDADLHDALATLAHDARLPLVATTNAHYARPRDAHLAQALAAVRAT 242

Query: 237 STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
           S++          P  +L++ +EM  +    P ++     +A  C+F L++ AP LP + 
Sbjct: 243 SSLEQMDGWLPGAPTAHLRSGAEMARLHHRHPHSVPTAAALADECAFDLRLVAPGLPPYP 302

Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
             E  D    E + LR     G   R       +   A     +LD EL VI  + F GY
Sbjct: 303 VPEGHD----EASWLRELVYRGATDRYGPRHAERIAGA---WAQLDHELAVIEGLDFPGY 355

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
           FL+V D +++ + + I +  GRGS A S   YAL IT +D ++  LLFERFL P+R   P
Sbjct: 356 FLVVYDLVEFCRVHGI-LAQGRGSAANSAVCYALGITAVDAVKNRLLFERFLAPERDGPP 414

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           D DID    RR+EVI++V  K+G    AQ+    S + ++A+RD  RAL     Q D   
Sbjct: 415 DIDIDIESVRREEVIQHVYTKFGRSHAAQVANVISYRPRSAVRDAARALGYDVGQQDAWS 474

Query: 477 KLIPNDPAHPVSLQ 490
           K I    +   + +
Sbjct: 475 KSIERWGSLRDTPK 488


>gi|239617281|ref|YP_002940603.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239506112|gb|ACR79599.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 1430

 Score =  425 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 171/942 (18%), Positives = 317/942 (33%), Gaps = 200/942 (21%)

Query: 57   EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            +    A   GI+ I   +          +             + +L     G + L ELV
Sbjct: 576  KLLSMAKKRGIKKIAELEN---------LRKHINISSLRPLHVTILAKNKTGLRNLYELV 626

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            +  +      +  RI  S L E   EGLI+ +   SG + +A+   ++    + +  F  
Sbjct: 627  TLSHTK-YFYKKPRIPKSILLE-KREGLIIGSACISGELSKAYLSGANAAELEEIAKFFD 684

Query: 177  LFG-------DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                      D         R   +    +  ++     +P+V T +  FL  ED     
Sbjct: 685  FIEIMPLDVLDYNEAEAHITRENLKNMYREFYRIGKKLNIPVVMTGDVHFLEPEDAIYRA 744

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS----IFSDLPEALENTVEIARRCSFIL 285
            VL A        +       P  YL+   EM+     IF D   A E  V+ +R+ + ++
Sbjct: 745  VLEAAQEYQNFDK------QPSLYLRTTEEMLEAAKEIFEDEEIAYEVVVKNSRKIALMV 798

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            +  API  +        I +  + ++R                      +   +RL+ EL
Sbjct: 799  ENIAPIRGKLHPP----IIEGADEQVRELTYKTAHEIYGDPL------PEIVEKRLEKEL 848

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----- 400
              I    ++  +LI    ++ + ++   VG  RGS   S+ A  L IT+++PL       
Sbjct: 849  RAIIGHGYAVLYLIAQKIVRKSNEDGYVVG-SRGSVGSSLVATMLGITEVNPLPPHYVCP 907

Query: 401  ------------------------------------SLLFERFLNPDRMSMPDFDIDFCQ 424
                                                ++ FE FL  +   +PD D++F  
Sbjct: 908  ACKHSEFVLDGSVESGYDLKDKSCPECGALMQKNGQNIPFETFLGFEGDKVPDIDLNFSG 967

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + ++    Y++  +G + V +  T  +L  + A   V   ++    Q+ R          
Sbjct: 968  EYQERAHAYLEKLFGKDHVFRAGTISTLAERTAYGFVKAYMERSKKQLRR---------- 1017

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG--DRPLSQL 542
                                      +  ++  + G+ +    H  G++I   DR + + 
Sbjct: 1018 ------------------------AEIDRLASGIVGVRKTTGQHPGGLMIVPKDRDVHEF 1053

Query: 543  VPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             P+     D +S    T F  + I    L+K D LG    T ++   D        VD +
Sbjct: 1054 TPVQFPANDTKSRTMTTHFAYEVIHD-DLVKIDALGHDDPTFIRMLKDITG-----VDPT 1107

Query: 600  LIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             +P DD +T  + ++               GTLGI +  +  +R  L   +P    +++ 
Sbjct: 1108 TVPMDDKDTLSIFSSTKVLGINPRDLGTDVGTLGIPEFGTQFVRGMLRETRPKTFGELVR 1167

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +  L       ++ + N R             I         VI  ++ +M        Y
Sbjct: 1168 ISGLSHGT---DVWLNNAR-----------DWIVSKKATLSDVIACRDDIM-------NY 1206

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
             +S+     +A   KI E++  +K + I+      + +      F    +   Y F K+H
Sbjct: 1207 LISKGIEPLKAF--KIMEKV--RKGKGITDEEVEMMQEAEVPEWFIESCRRIKYLFPKAH 1262

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------------- 800
            A AY  + Y+ A+ K HYP+ F +   T++ D  +                         
Sbjct: 1263 AVAYVSMGYRVAYFKVHYPLAFYSTYFTIKGDEFDVDLALGDVSGIRKEITNLKNNANKN 1322

Query: 801  -------KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARH 852
                    + +   + R      +P  +       F +  N +      +K +G   A  
Sbjct: 1323 VKERSKETLLEIVLEMRLRGYSFLPVDLEKSDARRFLIEGNALRIPFNRLKNLGYKVAIS 1382

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I++    +PF S+ED   R    K +  +L      GA    
Sbjct: 1383 IIKEREKRPFSSVEDLLKRTSINKTHVEILR---KYGAFKGL 1421



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 33/71 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S L+  + +N +   + +    A+A+TD   + S   F   A  +GI+PI 
Sbjct: 331 VELHLHTKMSALDAIVDVNELFKTLKSWGHDAVALTDHGVVQSIPNFYFAAKKSGIKPIF 390

Query: 72  GCQLDIDMQDN 82
           G +  +     
Sbjct: 391 GMEGYMVNDSE 401


>gi|323351877|ref|ZP_08087528.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis VMC66]
 gi|322121934|gb|EFX93666.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis VMC66]
          Length = 583

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 159/501 (31%), Positives = 259/501 (51%), Gaps = 27/501 (5%)

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQR 592
            + D  L+  +P+      D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L + 
Sbjct: 1    MSDNDLTDQIPL--KYGEDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKY 58

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             V ++++ I  +D  T  L     T GIFQ E  G    L+ +QP C E+++A  SL RP
Sbjct: 59   EVDIEIAEIDLEDAGTLKLFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRP 118

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            G  D I  +  RK+G E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+
Sbjct: 119  GASDYIDNFVKRKHGLEQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADI 178

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK   EM + +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +
Sbjct: 179  LRRAMGKKNAAEMHRMQEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSAL 238

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            ++Q A+ K HYP  F    +     +      +  DA  F+ +  P S+N      K  D
Sbjct: 239  AFQLAFFKAHYPDVFFDVMLNYSSSD------YITDALSFDFETAPLSINNIPYHDKFQD 292

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             +I+  L  IKG+    A  I+E   +  F  +EDF  R+        +L  L+  G  D
Sbjct: 293  KKIFLGLKNIKGLPRDLAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFD 352

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
             F  +R ++L +L N+  +A        ++  ++FA    ++++          + + +F
Sbjct: 353  SFEKNRQKILANLPNLFVFA--------DELGSLFADTTYSWTEA------QDFSDAEKF 398

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            E EQ ++G   S HPL      L K   + +         +  R+ A V S +  +T+KG
Sbjct: 399  ELEQSIIGVGLSDHPL----VKLAKEADQPFSWISELTENSRARILAEVQSIKTIRTKKG 454

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + ++  S+  K+ +   FP
Sbjct: 455  ENMAFLQVSDTKKKLDVTLFP 475


>gi|260101367|ref|ZP_05751604.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075]
 gi|260084819|gb|EEW68939.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075]
          Length = 1436

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 166/883 (18%), Positives = 301/883 (34%), Gaps = 140/883 (15%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L    +G + L +LVS     +   +  R   S L  +  EGL   +G   
Sbjct: 606  RARPSHMTVLAKDQKGLKNLYKLVSIASTKN-FYRIPRTPKSDLARLH-EGLFYGSGCWQ 663

Query: 153  GPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGY-DRYRESQVVQ----LAY 205
            G +  A        A ++   +   ++     Y  L       D  +   +++    L  
Sbjct: 664  GDVFIAMIQKGYDEAREKAKFYDFLEVQPPANYSQLIEDGLIKDEAQLEDIIRNIYKLGK 723

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                P+VAT ++ ++   D     +L++       S  +R +  PD +  +  EM+  FS
Sbjct: 724  ELNKPVVATGDAHYVEPHDAIYRTILISAQ----RSNPNRNKPQPDLHFYSTQEMLDAFS 779

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
             L E       ++NT +IA   S I  +   + P  I    ++++K   ++        L
Sbjct: 780  FLGEDIAKEIVIDNTNKIADEISEIQPIKDGLYPPHIAHADEEMKKLTYDKAYELYGKPL 839

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                           +  + R+D ELN I    ++  +LI    +  + K+   VG  RG
Sbjct: 840  --------------PKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRG 884

Query: 380  SGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFCQ-----D 425
            S   S+ A    IT+++PL         ++S  FE         +PD     C      D
Sbjct: 885  SVGSSLVATMSGITEVNPLAPHYRCPKCKYSQFFENGEYGSGFDLPDKACPKCGTQLVKD 944

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +D         +G ++V  I    S   +    +  R +        R    I      
Sbjct: 945  GQDIPFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM-FGPDNSYR-AGTIATVADK 1001

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLV 543
                 A      F E R        L  ++  + G+ R    H AGIV+      +    
Sbjct: 1002 T----AYGYAKHFDEERDLKARNAELDRLASGIRGVKRTTGQHPAGIVVVPDDMDIYDFT 1057

Query: 544  PM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+     DV +   +T ++   I    ++KFD LG    T+++   D        +D   
Sbjct: 1058 PVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDPTMIRHLQDL-----SGIDPLT 1111

Query: 601  IPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            IP DD     L ++               GTLG+ +  +  +R  LE  +P    +++ +
Sbjct: 1112 IPPDDPGVMSLFSSPKILGVTPEQIQSETGTLGVPEFGTRFVRGMLEETKPTTFAELLQI 1171

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
              L     +      +   NG  K+  +    D ++ +     +  E           +S
Sbjct: 1172 SGLSHGTDVWLGNAEDLVNNGTCKLKDVIGCRDNIMMDLIHWGVKPEVA---------FS 1222

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
              E+    R +  +    +               I      +  ++      Y F K+HA
Sbjct: 1223 TMESVRHGRGISDENMAIL----------KKNKNIPDWYIPSCLKI-----KYMFPKAHA 1267

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK----------------------- 803
             AY +++ + AW K +YP  +  A  ++  D  + +                        
Sbjct: 1268 TAYILMALRIAWFKVYYPEIYYTAYFSVRADLFDLVAMSHGKNTVKAAMKEIQDKGNDAS 1327

Query: 804  ----------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGTTTAR 851
                      +   +  +  I+I    ++     DFK+ D         A+ G+G   A+
Sbjct: 1328 AKDKSLLTVLEIANECLERGIKIKMVDIDQSEATDFKILDKHTILAPFNAVPGLGDNAAK 1387

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLE-SLVFAGALDC 893
             I+ A A+K F S ED   R    +      E + V  G  D 
Sbjct: 1388 QIVAARAEKKFLSKEDLAKRGKVSQTIMNYFEDNGVLEGMPDE 1430



 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%)

Query: 2   TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           T+  E     V L +H++ S L+   + ++ +       Q AIAITD  ++ S  E    
Sbjct: 323 TEKYEGEQKRVELHLHTNMSQLDATNAPSDFIKTAKKFGQKAIAITDHGDVQSFPEAYST 382

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
             A G + + G + ++     L + N     +     ++  V T
Sbjct: 383 GKATGTKILYGVEANMIDDHALLVINPAPMTYEDREFVIFDVET 426


>gi|257125285|ref|YP_003163399.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b]
 gi|257049224|gb|ACV38408.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b]
          Length = 1459

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 173/905 (19%), Positives = 329/905 (36%), Gaps = 163/905 (18%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS----GPI 155
            ++LV    G + L ELVSR ++   GK+  RI  S L  +    LI  +  +S    G +
Sbjct: 615  MILVKNQAGLRDLYELVSRSHIEFFGKRRPRIPKSLLNSMRENLLIASSASASERNRGEL 674

Query: 156  DRAFFFNSS-QVAEKRLLTFKKL-------FGDRLYVNLQRHRGYD--RYRESQVVQLAY 205
               +   +     E++   +  +       + DR+    +    YD  R       +L  
Sbjct: 675  VNLYLRGTEKDDIEEKAKFYDYIEIHPTANYTDRVEKRSKEIENYDIIREMNKYFYELGK 734

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-----KDRPRVTPDHYLKNRSEM 260
                 +VAT ++ +L E +    +VL+  + +   ++     K+        Y K   EM
Sbjct: 735  KLNKIVVATGDTHYLEEREVINRNVLLLGSGTMWKTEVAEGVKEYEFFDRKLYFKTTEEM 794

Query: 261  VSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
            +  F  L E  A E  VE   R S +++   PI   F   + +      E+E+R    + 
Sbjct: 795  LEEFKYLGEETAQEVVVENTHRISDMIEQVRPIPTGFYPPKIEGA----EDEVRKMTYSK 850

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            L+    +          D ++R++ ELN I +  F+  +LI    +  +      VG  R
Sbjct: 851  LKELYGENIDP------DLKERVEKELNSIIQNGFAVLYLIAQKLVHKSVDAGYLVG-SR 903

Query: 379  GSGAGSVTAYALTITDIDPL---------------------------------------R 399
            GS   S+ AY + IT+++ L                                        
Sbjct: 904  GSVGSSIVAYLMGITEVNGLYPHYRCPKCKHTEFMNEEGSGVDYPDKNCPECGTKYIKDG 963

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
             ++ FE F+  +   +PD D++F  + + E+ +Y +  +G + V +  T  +L  K A  
Sbjct: 964  HAIPFEVFMGFNGDKVPDIDLNFSGEYQGEIHKYTEELFGSDNVFRAGTISTLAEKNAFG 1023

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V +                         L+ +      +E          ++ I++  E
Sbjct: 1024 YVKKY------------------------LEEVEGTPEIKE------RKAEVMRIAKGCE 1053

Query: 520  GLYRHASTHAAGIVIGDRP--LSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            G  +    H  G+++  +   +    P+ R   D+++    T F+   +++  L+K D L
Sbjct: 1054 GARKTTGQHPGGMIVVPKDKSIYDFCPIQRPANDMKATSKTTHFDYHVMDEQ-LVKLDIL 1112

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            G    T L+   D        VD+  IP DD E   L +    LG+   E  G      G
Sbjct: 1113 GHDDPTTLRILQDLTG-----VDIYTIPLDDKEVMSLFSGTEALGVTPDEI-GSPTGTSG 1166

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQE 693
            +       +  ++   RP     +V  +   +G +  + +    +   +     +I  ++
Sbjct: 1167 IPEFGTSFVKQMLVDTRPKTFAELVRISGLSHGTDVWLNNAQDYVRSGIATLSQIITVRD 1226

Query: 694  QVMQ---IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
             +M       L    + S  + +R+    K  E+  +             + +      +
Sbjct: 1227 DIMNKLIDDGLDKSLAFSIMEFVRKGQPTKNPEKWREF---------SKTMKEHGVEQWY 1277

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------- 800
                +   Y F K HA AY +++ + A+ K HYP+EF  A +  ++ + +          
Sbjct: 1278 IDSCEKIKYMFPKGHAVAYVMMAVRIAYFKVHYPIEFYTAFLNRKVGDFKMTTMFRPVED 1337

Query: 801  ----KIK------------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYY 837
                K++                  +   +     I++    +       F + D +I  
Sbjct: 1338 LKQAKMELDRKGTLNVKEKQELFLYEILIEMHYRKIELEQIDIYKSEAKLFTIQDGKIRM 1397

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L A+ G+G   A +I+       F S+ED   R    KLN+ ++E +   G L     +
Sbjct: 1398 PLIAMDGLGEAVAENIVSERKV-DFLSIEDLVKRT---KLNKTIVELMKEYGCLKDLSAT 1453

Query: 898  RMQLL 902
              Q L
Sbjct: 1454 NQQTL 1458



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H++ S + G +S+ +   +        IA+TD   + S   F+ K      + I 
Sbjct: 340 IELHAHTNMSEMSGVMSIKDYAKRAKEFGHSGIAVTDYGVVHS-FPFAFKEANEDFKVIF 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G +  +   +   +TN           +V  + T
Sbjct: 399 GMEAYVVDDEQDLITNPKDKMIEDEIYVVFDIET 432


>gi|268319259|ref|YP_003292915.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785]
 gi|262397634|emb|CAX66648.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785]
          Length = 1432

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 165/905 (18%), Positives = 310/905 (34%), Gaps = 186/905 (20%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L    EG + + +LVS         +  R   S L++   +GL+  +G   
Sbjct: 602  RAKPSHMSVLALNQEGLKNMYKLVSLASTK-YFYRIPRTPKSELRKYH-KGLLFGSGCWQ 659

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGD-----RLYVNLQRHRGYDRYRE--SQVVQLAY 205
            G +  +        A ++   +  L        +  +     +  D   E    + +L  
Sbjct: 660  GDVFISMMQKGYDEAREKARFYDYLEVQPPAAYQTLIEDDLIKDEDELHEIIQNIYKLGK 719

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                P+VAT+++ ++   +     +L+A          +R +  PD +  +  EM+  FS
Sbjct: 720  ELNKPVVATSDAHYVEPHEAIYRKILLAAQKG----NPNRNKNLPDLHFYSTQEMLDAFS 775

Query: 266  DLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
             L E  A E  ++   + +  ++  API         ++  +E ++   NKA        
Sbjct: 776  FLGEDVAKEIVIDNTNKLADHIEEIAPIKSGLYPPHIENADQEMKDLTYNKAYE------ 829

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                +      +    R++ ELN I    ++  +LI    +  + K+   VG  RGS   
Sbjct: 830  ----LYGKPLPKIVEDRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGSVGS 884

Query: 384  SVTAYALTITDIDPL---------RFSLLFER---------------------------- 406
            S+ A    IT+++PL         ++S  FE                             
Sbjct: 885  SLVATMSGITEVNPLAPHYRCPNCKYSKFFENGEYGSGYDLPDKECPKCGTLLVKDGQDI 944

Query: 407  ----FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
                FL      +PD D++F  D +     Y++  +G +   +  T  ++  K A   V 
Sbjct: 945  PFATFLGFHGDKVPDIDLNFSGDYQPVAHNYIRVMFGPDNSFRAGTIATVADKTAYGYV- 1003

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                                       +   D++      L +  +DRL   +    G+ 
Sbjct: 1004 ---------------------------KHYEDENEL---HLRNAELDRL---AAGASGVK 1030

Query: 523  RHASTHAAGIVIGDRP--LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H AGIV+      +    P+             T F+   I    ++KFD LG  
Sbjct: 1031 RTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHD-NILKFDILGHD 1089

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKGTLGIFQL 623
              T+++   D        VD   IP DD     L +                GTLG+ + 
Sbjct: 1090 DPTMIRMLQDL-----SGVDPLTIPPDDPGVMSLFSSPEILGVTPEQIQSKTGTLGVPEF 1144

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +R  LE  +P    +++ +  L     +      +   NG  K+ ++    D ++ 
Sbjct: 1145 GTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINNGTCKLKNVIGCRDNIMM 1204

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +     +  E        ++ ++  E+    R +  +  E +            KN    
Sbjct: 1205 DLIHWDVKPE--------VAFFT-MESVRHGRGISDENMEIL-----------KKN---- 1240

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                + +        Y F K+HA AY +++ + AW K +YPV + A+  ++  D  + + 
Sbjct: 1241 DKIPDWYIPSCLKIKYMFPKAHATAYILMALRIAWFKVYYPVIYYASYFSVRADLFDLVA 1300

Query: 804  ---------------------------------KFCQDARQFNIQIMPPSVNTP-CVDFK 829
                                             +   +  +  I+I    VN     DFK
Sbjct: 1301 MSHGKNTVKAAMKEIQDKGMDVSAKDKSLLTVLEIANECLERGIKIKMVDVNESEATDFK 1360

Query: 830  VGDNRIYY-SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL-VF 887
            + D+        A+ G+G   A+ I+ A A++ F S ED  +R    +      E+  V 
Sbjct: 1361 IIDDHTILAPFNAVPGLGDNAAKQIVAARAEQKFLSKEDLATRGKVSQTIMEYFENNGVL 1420

Query: 888  AGALD 892
             G  D
Sbjct: 1421 EGMPD 1425



 Score = 69.2 bits (168), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 41/94 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   + ++ +       Q AIAITD  ++ S  E      +  ++ + 
Sbjct: 329 VELHLHTNMSQLDATSTASDFIKTAKKFGQKAIAITDHADVQSFPEAYHTGASEKMKILY 388

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++     L + N  +  +     ++  V T
Sbjct: 389 GYEANMIDDHALLVLNPTEMDYRDREYVIFDVET 422


>gi|329667117|gb|AEB93065.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii DPC 6026]
          Length = 1432

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 169/912 (18%), Positives = 312/912 (34%), Gaps = 200/912 (21%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L    EG + + +LVS         +  R   S L++   +GL+  +G   
Sbjct: 602  RAKPSHMSVLALNQEGLKNMYKLVSLASTK-YFYRIPRTPKSELRKYH-KGLLFGSGCWQ 659

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGD-----RLYVNLQRHRGYDRYRE--SQVVQLAY 205
            G +  +        A ++   +  L        +  +     +  D   E    + +L  
Sbjct: 660  GDVFISMMQKGYDEAREKARFYDYLEVQPPAAYQTLIEDDLIKDEDELHEIIQNIYKLGK 719

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                P+VAT++S ++   +     +L+A         K+     PD +  +  EM+  FS
Sbjct: 720  ELNKPVVATSDSHYVEPHEAIYRKILLAAQKGNSNRNKNL----PDLHFYSTQEMLDAFS 775

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAV 316
             L E       ++NT ++A +   I  + + + P  IE   +E  D+   +  EL  K +
Sbjct: 776  FLGEDVAKEIVIDNTNKLADQIEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPL 835

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                              +    R++ ELN I    ++  +LI    +  + K+   VG 
Sbjct: 836  -----------------PKIVEDRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVG- 877

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFSLLFER--------------------- 406
             RGS   S+ A    IT+++PL         ++S  FE                      
Sbjct: 878  SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSKFFENGEYGSGYDLPDKECPKCGTPL 937

Query: 407  -----------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                       FL      +PD D++F  D +     Y++  +G +   +  T  ++  K
Sbjct: 938  VKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNYIRVMFGPDNSFRAGTIATVADK 997

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V                            +   D++      L +  +DRL   +
Sbjct: 998  TAYGYV----------------------------KHYEDENEL---HLRNAELDRL---A 1023

Query: 516  QKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIK 570
                G+ R    H AGIV+      +    P+             T F+   I    ++K
Sbjct: 1024 AGASGVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHD-NILK 1082

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKG 616
            FD LG    T+++   D        VD   IP DD     L +                G
Sbjct: 1083 FDILGHDDPTMIRMLQDL-----SGVDPLTIPPDDPGVMSLFSSPEILGVTPEQIQSKTG 1137

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            TLG+ +  +  +R  LE  +P    +++ +  L     +      +   NG  K+ ++  
Sbjct: 1138 TLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINNGTCKLKNVIG 1197

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
              D ++ +     +  E        ++ ++  E+    R +  +  E +           
Sbjct: 1198 CRDNIMMDLIHWGVKPE--------VAFFT-MESVRHGRGISDENMEIL----------- 1237

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             KN        + +        Y F K+HA AY +++ + AW K +YPV + A+  ++  
Sbjct: 1238 KKN----DKIPDWYIPSCLKIKYMFPKAHATAYILMALRIAWFKVYYPVIYYASYFSVRA 1293

Query: 797  DNVEKIK---------------------------------KFCQDARQFNIQIMPPSVNT 823
            D  + +                                  +   +  +  I+I    VN 
Sbjct: 1294 DLFDLVAMSHGKNTVKAAMKEIQDKGMDVSAKDKSLLTVLEIANECLERGIKIKMVDVNE 1353

Query: 824  P-CVDFKVGDNRIYY-SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                DFK+ D+        A+ G+G   A+ I+ A A++ F S ED  +R    +     
Sbjct: 1354 SEATDFKIIDDHTILAPFNAVPGLGDNAAKQIVAARAEQKFLSKEDLATRGKVSQTIMEY 1413

Query: 882  LESL-VFAGALD 892
             E+  V  G  D
Sbjct: 1414 FENNGVLEGMPD 1425



 Score = 69.2 bits (168), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 41/94 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   + ++ +       Q AIAITD  ++ S  E      +  ++ + 
Sbjct: 329 VELHLHTNMSQLDATSTASDFIKTAKKFGQKAIAITDHADVQSFPEAYHTGASEKMKILY 388

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++     L + N  +  +     ++  V T
Sbjct: 389 GYEANMIDDHALLVLNPTEMDYRNREYVIFDVET 422


>gi|282850817|ref|ZP_06260191.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            gasseri 224-1]
 gi|282557769|gb|EFB63357.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            gasseri 224-1]
          Length = 1389

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 171/922 (18%), Positives = 313/922 (33%), Gaps = 220/922 (23%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L    EG + + +LVS         +  R   S L++   +GL+  +G   
Sbjct: 559  RAKPSHMSVLALNQEGLKNMYKLVSLASTK-YFYRIPRTPKSELRKYH-KGLLFGSGCWQ 616

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY----------DRYRESQVVQ 202
            G +  +        A ++   +        Y+ +Q    Y          D     +++Q
Sbjct: 617  GDVFISMMQKGYDEAREKARFYD-------YLEVQPPAAYQTLIDDDLIKDEDELHEIIQ 669

Query: 203  ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
                L      P+VAT +S ++   +     +L+A       S  +R +  PD +  +  
Sbjct: 670  NIYKLGKELNKPVVATGDSHYVEPHEAIYRKILLAAQ----KSNPNRNKKLPDLHFYSTQ 725

Query: 259  EMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEEN 309
            EM+  FS L E       +ENT ++A +   I  + + + P  IE   +E  D+   +  
Sbjct: 726  EMLDAFSFLGEDVAKEIVIENTNKLADQIEEIAPIKSGLYPPHIENADQEMKDLTYNKAY 785

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL  K +                  +    R++ ELN I    ++  +LI    +  + K
Sbjct: 786  ELYGKPL-----------------PKIVEDRIELELNSIISNGYAVIYLISQRLVAKSNK 828

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFER-------------- 406
            +   VG  RGS   S+ A    IT+++PL         ++S  FE               
Sbjct: 829  DGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPKCKYSKFFENGEYGSGYDLPDKNC 887

Query: 407  ------------------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
                              FL      +PD D++F  D +     Y++  +G +   +  T
Sbjct: 888  PKCGTPLVKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNYIRVMFGPDNSFRAGT 947

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
              ++  K A   V                            +   D++      L +  +
Sbjct: 948  IATVADKTAYGYV----------------------------KHYEDENEL---HLRNAEL 976

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRS---DLPVTQFNMKWI 563
            DRL   +    G+ R    H AGIV+      +    P+             T F+   I
Sbjct: 977  DRL---AAGASGVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLSAAWLTTHFDFHSI 1033

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT---------- 613
                ++KFD LG    T+++   D        +D   IP DD     L +          
Sbjct: 1034 HD-NILKFDILGHDDPTMIRMLQDL-----SGIDPLTIPPDDPGVMSLFSSPKILGVTPE 1087

Query: 614  ----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
                  GTLG+ +  +  +R  LE  +P    +++ +  L     +      +   NG  
Sbjct: 1088 QIQSKTGTLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINNGTC 1147

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQV---MQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            K+ ++    D ++ +     +  E     M+  +   G S    ++L++           
Sbjct: 1148 KLKNVIGCRDNIMMDLIHWGVKPEVAFFTMESVRHGKGISDENMEILKK----------- 1196

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
                                 + +        Y F K+HA AY +++ + AW K +YPV 
Sbjct: 1197 ----------------NDKIPDWYIPSCLKIKYMFPKAHATAYILMALRIAWFKVYYPVI 1240

Query: 787  FLAASMTLEMDNVEKIK---------------------------------KFCQDARQFN 813
            + A+  ++  D  + +                                  +   +  +  
Sbjct: 1241 YYASYFSVRADLFDLVAMSHGKNTVKAAMKEIQDKGMDVSAKDKSLLTVLEIANECLERG 1300

Query: 814  IQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            I+I    VN    +DFK+ D+        A+ G+G   A+ I+ A A++ F S ED  +R
Sbjct: 1301 IKIKMVDVNESEAMDFKIIDDHTILAPFNAVPGLGDNAAKQIVAARAEQKFLSKEDLATR 1360

Query: 872  VDSKKLNRRVLESL-VFAGALD 892
                +      E+  V  G  D
Sbjct: 1361 GKVSQTIMEYFENNGVLEGMPD 1382



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 41/94 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   + ++ +       Q AIAITD  ++ +  E      +  ++ + 
Sbjct: 286 VELHLHTNMSQLDATSTASDFIKTAKKFGQKAIAITDHADVQAFPEAYHTGASEKMKILY 345

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++     L + N  +  +     ++  V T
Sbjct: 346 GYEANMIDDHALLVLNPTEMDYRDREYVIFDVET 379


>gi|153854163|ref|ZP_01995471.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
 gi|149753212|gb|EDM63143.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
          Length = 1513

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 175/948 (18%), Positives = 325/948 (34%), Gaps = 188/948 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +     GI  +       +        N           +++L     G   L  L
Sbjct: 626  VKFVEMLKDRGIYDLAKLNQFGEN-------NADAVRKLPSYHVIILALNEVGRVNLYTL 678

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            +S  +L     +  RI  S L +   EGL++ +   +G + +A   + S+    ++  F 
Sbjct: 679  ISMSHLK-YYARRPRIPKSELSKY-REGLLVGSACEAGELYQAILNDKSEERIAKIANFY 736

Query: 175  -----KKLFGDRLYVNL-----QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
                 + L  ++  +        ++    +    ++V L      P+V T +  F++ ED
Sbjct: 737  DYLEIQPLGNNQFMIESPKITKVQNEEDLKEINRKIVALGERFNKPVVGTCDVHFMNPED 796

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA------LENTVEIA 278
                 ++MA          D     P  YL+   EM+  F  L  A      +EN V+IA
Sbjct: 797  EVYRRIIMA---GKGFGDADN---QPPLYLRTTDEMLEEFEYLGSAKAREIVIENPVKIA 850

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                 I  V     P  I         + +  LR+           +         +   
Sbjct: 851  EMVEKITPVRPDKCPPVIP--------DSDKMLRDICYNKAHSMYGENL------PEIVT 896

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL+ ELN I    F+  ++I    +  + ++   VG  RGS   S  A    IT+++PL
Sbjct: 897  ERLERELNSIISNGFAVMYIIAQKLVWKSVEDGYLVG-SRGSVGSSFVATMAGITEVNPL 955

Query: 399  R---------------------------------------------FSLLFERFLNPDRM 413
                                                          F + FE FL     
Sbjct: 956  SPHYYCKKCHYSDFDSEEVRKFAGGCGWDMPDRVCPVCGEKLIKDGFDIPFETFLGFKGN 1015

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D++F  D +    +Y +  +G  +  +  T G+L  K A   V    +  + Q  
Sbjct: 1016 KEPDIDLNFSGDYQSNAHKYTEVIFGAGQTFRAGTVGTLADKTAFGYVKNYYE-EHGQGK 1074

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            R C                               +DR++   Q   G+ R    H  GI+
Sbjct: 1075 RKC------------------------------EIDRIV---QGCTGIRRSTGQHPGGII 1101

Query: 534  IGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            +      ++   P+         D+  T F+   I+   L+K D LG    T+++   ++
Sbjct: 1102 VLPLGEEINSFTPVQHPANDMTTDIVTTHFDYHSIDH-NLLKLDILGHDDPTMIKTLEEY 1160

Query: 589  L---------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            +          +   + D + IP DD     L      LGI   +  G      G+    
Sbjct: 1161 ISSPAMDNEYNETDNRFDATKIPLDDPGVISLFHDTSALGIKPDDIGGCPVGCLGIPEFG 1220

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQI 698
             + +I +V   +P  I +++  +   +G +  ++    LI          I  ++ +M  
Sbjct: 1221 TDFVIQMVVDTKPNTISDLIRISGLSHGTDVWLNNAQELIRSGKATISTAICTRDDIMTY 1280

Query: 699  AQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
                 + S  S +  + +R+    K K    K+   F     K  +++    + +    +
Sbjct: 1281 LINKGMDSEESFTIMERVRKGTVAKGK---CKEWPEF-----KKDMAEHNVPDWYVWSCE 1332

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS------------------------ 791
               Y F K+HAAAY +++Y+ A+ K +YP+ +  A                         
Sbjct: 1333 QIKYMFPKAHAAAYVMMAYRIAYCKINYPLAYYGAYFGIRADAFSYEIMCQGKEKLQYYI 1392

Query: 792  ---------MTLEMDNVEKIKKFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAA 841
                     ++ +  +  K  K  Q+      +  P  +       F + + ++   L++
Sbjct: 1393 DDYNRRSATLSKKEQDTMKDMKIVQEMYARGFEFEPLDIYKAQATKFLIVNGKLMPPLSS 1452

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL-ESLVFA 888
            I G+G   A  + EAS D  + SL+DF  R  + K     + E  + A
Sbjct: 1453 IDGMGEKAAEAVAEASKDGTYLSLDDFRQRTKASKTVIDTMVELGILA 1500



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           V L  H+  S ++    +  +L +      PA+AITD   +
Sbjct: 381 VELHCHTKMSDMDAVTDVTTLLKQAHDWGHPAMAITDHGVV 421


>gi|170288161|ref|YP_001738399.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
 gi|170175664|gb|ACB08716.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
          Length = 1367

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 187/941 (19%), Positives = 333/941 (35%), Gaps = 201/941 (21%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            L F +     GI  +   +   D  D   +               +LV   +G + L +L
Sbjct: 514  LRFVEMMKKIGITKLSEIENLKDTIDYTALK---------PFHCTILVQNKKGLKNLYKL 564

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ-VAEKRLLTF 174
            VS  Y+        RI  S L E   EGL++ +   SG + RA    +S    E+    +
Sbjct: 565  VSDSYIK-YFYGVPRILKSALIE-NREGLLVGSACISGELGRAALEGASDSELEEIAKFY 622

Query: 175  KKLFGDRLYVNLQRHRGYDRYRES----QVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              +    L V  +     DR R      ++ ++A      +V T +  FL  ED      
Sbjct: 623  DYIEVMPLDVIAEDEEDLDRERLKEVYRRLYRIAKKLNKFVVMTGDVHFLDPEDARGRAA 682

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS----IFSDLPEALENTVEIARRCSFILQ 286
            L+A   +            P  YL+   EM+     IF D   A E  +E   R + +++
Sbjct: 683  LLAPQGNRNFEN------QPALYLRTTEEMLEKAMEIFEDEEIAREVVIENPNRIADMIE 736

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               P+  +        I +  +  +RN  +                  +  ++R++ ELN
Sbjct: 737  EVQPLEKKLHPP----IIENADEIVRNLTMKRAYEIYGDPL------PEIVQKRVEKELN 786

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I    ++  +LI  + +Q +  +   VG  RGS   S+ A  L IT+++PL        
Sbjct: 787  AIINHGYAVLYLIAQELVQKSMSDGYVVG-SRGSVGSSLVANLLGITEVNPLPPHYRCPE 845

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                                + FE F+  +   +PD D++F  +
Sbjct: 846  CKYFEVVEDDRYGAGYDLPDKKCPVCGAPLKKDGHDIPFETFMGFEGDKVPDIDLNFSGE 905

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             ++   R+V+  +G + V +  T  ++  K+A   VG           +L K        
Sbjct: 906  YQERAHRFVEELFGKDHVYRAGTINTIAEKSA---VGYVRSYEEKTGKKLRKA------- 955

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG--DRPLSQLV 543
                                  ++RL+ +   + G+ R    H  G++I   D+ +    
Sbjct: 956  ---------------------EMERLVSM---ITGVKRTTGQHPGGLMIIPKDKEVYDFT 991

Query: 544  PMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+     D  + +  T F  + I    L+K D LG    T ++   D        +D   
Sbjct: 992  PIQYPANDRNAGVFTTHFAYETIHD-DLVKIDALGHDDPTFIKMLKDLTG-----IDPMT 1045

Query: 601  IPFDDHETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            IP DD ET                L +  GT GI +  +  +R  L   +P    +++ +
Sbjct: 1046 IPMDDPETLAIFSSVKPLGVDPVELESDVGTYGIPEFGTEFVRGMLVETRPKSFAELVRI 1105

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ---IAQLLS 703
              L       ++ + N R             I+    +   VI  ++ +M       +  
Sbjct: 1106 SGLSHGT---DVWLNNAR-----------DWINLGYAKLSDVISCRDDIMNFLIHKGMEP 1151

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
              +    + +R+   K I EEM+ +            + K      F    K   Y F K
Sbjct: 1152 SLAFKIMENVRKG--KGITEEMESE------------MRKLKVPEWFIESCKRIKYLFPK 1197

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQF-- 812
            +HA AY  ++++ A+ K HYP++F AA  T++ D  +          IK+  ++ +    
Sbjct: 1198 AHAVAYVSMAFRIAYFKVHYPLQFYAAYFTIKGDQFDPVLVLRGKEAIKRRLRELKAMPA 1257

Query: 813  ---------------------NIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                                     +PP +  +    F +  N +      + G+G + A
Sbjct: 1258 KDAQKKNEVSVLEVALEMILRGFSFLPPDIFKSDAKKFLIEGNSLRIPFNKLPGLGDSVA 1317

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I+ A  +KPF S+ED   R    K +  +++SL   G L
Sbjct: 1318 ESIIRAREEKPFTSVEDLMKRTKVNKNHIELMKSLGVLGDL 1358



 Score = 91.2 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 2   TQYLEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            + ++ SP   V L  H+ +S  +    +N  + +      PA+A+TD  N+ +   F  
Sbjct: 260 AKRMDNSPVKRVELHAHTKFSDQDAITDVNEYVKRAKEWGFPAVALTDHGNVQAIPYFYD 319

Query: 61  KACAAGIQPII 71
            A  AGI+PI 
Sbjct: 320 AAKEAGIKPIF 330


>gi|194467743|ref|ZP_03073729.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23]
 gi|194452596|gb|EDX41494.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23]
          Length = 1443

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 159/935 (17%), Positives = 318/935 (34%), Gaps = 177/935 (18%)

Query: 55   ALEFSQKACA-AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
              +F + A A   ++ +      ++  +  +              + +   T  G + L 
Sbjct: 582  LYKFLKDAEARYDVKYVDDLNKHMEENNAYR--------HARPFHVTIFAQTQAGLKNLF 633

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +LVS   + +   +  RI  + L +   EGL++ T  SSG +  A        A ++   
Sbjct: 634  KLVSLSNV-EYFYRVPRIPRTVLTKY-REGLLLGTACSSGEVFTAMMEKGYDQALEKARY 691

Query: 174  FKKL---FGDRLYVNLQRHRGYDRYRESQV----VQLAYTHELPLVATNNSLFLSEEDYE 226
            +  +           L++H   D      +    V+L    E  +VAT +  +L   D  
Sbjct: 692  YDFIEVQPKPNYAPLLEQHVIADEEHLEDILKNMVKLGDELEKTVVATGDVHYLDPHDGI 751

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFI 284
               +L+        +        P+ + +   EM++ F+ L E  A E  VE + + +  
Sbjct: 752  YRKILINSQGG---ANPLNRTERPEVHFRTTDEMLNKFAFLGEEKAHELVVENSNKIAAE 808

Query: 285  LQVH-APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            +  +  P+  +         ++E ++   N A       L           Q  + R++ 
Sbjct: 809  IDDNIRPVKDKLYPPHMKGAEQEIQDRTWNTARKWYGDPL----------PQLVQDRIEL 858

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            ELN I +  FS ++LI    +  + K+   VG  RGS   SV A    IT+++PL     
Sbjct: 859  ELNSIVKNGFSVHYLIAQRLVAKSNKDGYLVG-SRGSVGSSVVATLSGITEVNPLPPHYR 917

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                   + F+ FL      +PD D++F
Sbjct: 918  CPNCQFTHFYTQGEYSSGFDLPDKKCPKCGTLMVKDGHDIPFQTFLGFKGNKVPDIDLNF 977

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D +     Y++  +G + V +  T G++  K A   V                     
Sbjct: 978  SGDYQPIAHNYMKVLFGEKNVFRAGTIGTVADKTAYGYV--------------------- 1016

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLS 540
                   +A   D+  +E R A+        +++   G+ R    H AGI+I      + 
Sbjct: 1017 -------KAYERDTE-KEFRKAEED-----RLAKGATGVKRTTGQHPAGIIIVPDDMDIY 1063

Query: 541  QLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+             T F+   I    ++K D LG    T+++   D        +D
Sbjct: 1064 DFTPVQYPADDQTAAWETTHFDFHSIHD-NILKMDILGHDDPTMIRALQDL-----SGID 1117

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               IP DD     L ++   LG+ + +    +    G+       +  ++    P     
Sbjct: 1118 PQSIPMDDPGVMALFSSPKVLGVTEEQIQS-KTGTLGLPEFGTRFVRGMLEDTHPKNYSQ 1176

Query: 658  IVVYNNRKNGKEKI-VSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVL 713
            ++  +   +G      +   LI   +     VI  ++ +M       + S  S    + +
Sbjct: 1177 LLQISGLSHGTGVWLDNAQELIKQGIATIANVIGCRDNIMTDLIHYGMDSEISFQIMEHV 1236

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+               R I    +  + +      +        Y F ++HAAAY +++
Sbjct: 1237 RKG--------------RGIPDEWQEKMHEANVPQWYMDSCLKIKYMFPRAHAAAYVLMA 1282

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------------------ 803
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1283 LRIAYFKVYFPLVYYCAFFSVRADDFDVVAMSHGKDAVKQRMKEINDKGNDASAKEKNLL 1342

Query: 804  ---KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
               +   +  +   +     +      D+ +  + +     A+ G+G   A+ I+ A  +
Sbjct: 1343 TILELANEMLERGFKFKMVDIEKSDASDWLIDGDSLIAPFRAVPGLGLNVAKQIVAAREE 1402

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +PF S ED   R    K+++ +++ L     LD  
Sbjct: 1403 RPFLSKEDLAER---GKVSQTLIDFLTDNHVLDKL 1434



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++   S+  +  +      PAIA+TD  N+ +  E    A   GI+ + 
Sbjct: 340 VELHTHTTMSQMDATNSITELATRAHKWGHPAIAVTDHGNVQAFPEAFSVAQKTGIKMLY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++       + N+          ++  V T
Sbjct: 400 GMEANVVDDGIPLVYNENHEELAHQTYVIFDVET 433


>gi|116629466|ref|YP_814638.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri ATCC
            33323]
 gi|116095048|gb|ABJ60200.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
            gasseri ATCC 33323]
          Length = 1432

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 171/922 (18%), Positives = 313/922 (33%), Gaps = 220/922 (23%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L    EG + + +LVS         +  R   S L++   +GL+  +G   
Sbjct: 602  RAKPSHMSVLALNQEGLKNMYKLVSLASTK-YFYRIPRTPKSELRKYH-KGLLFGSGCWQ 659

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY----------DRYRESQVVQ 202
            G +  +        A ++   +        Y+ +Q    Y          D     +++Q
Sbjct: 660  GDVFISMMQKGYDEAREKARFYD-------YLEVQPPAAYQTLIDDDLIKDEDELHEIIQ 712

Query: 203  ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
                L      P+VAT +S ++   +     +L+A       S  +R +  PD +  +  
Sbjct: 713  NIYKLGKELNKPVVATGDSHYVEPHEAIYRKILLAAQ----KSNPNRNKKLPDLHFYSTQ 768

Query: 259  EMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEEN 309
            EM+  FS L E       +ENT ++A +   I  + + + P  IE   +E  D+   +  
Sbjct: 769  EMLDAFSFLGEDVAKEIVIENTNKLADQIEEIAPIKSGLYPPHIENADQEMKDLTYNKAY 828

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL  K +                  +    R++ ELN I    ++  +LI    +  + K
Sbjct: 829  ELYGKPL-----------------PKIVEDRIELELNSIISNGYAVIYLISQRLVAKSNK 871

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFER-------------- 406
            +   VG  RGS   S+ A    IT+++PL         ++S  FE               
Sbjct: 872  DGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPKCKYSKFFENGEYGSGYDLPDKNC 930

Query: 407  ------------------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
                              FL      +PD D++F  D +     Y++  +G +   +  T
Sbjct: 931  PKCGTPLVKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNYIRVMFGPDNSFRAGT 990

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
              ++  K A   V                            +   D++      L +  +
Sbjct: 991  IATVADKTAYGYV----------------------------KHYEDENEL---HLRNAEL 1019

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRS---DLPVTQFNMKWI 563
            DRL   +    G+ R    H AGIV+      +    P+             T F+   I
Sbjct: 1020 DRL---AAGASGVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLSAAWLTTHFDFHSI 1076

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT---------- 613
                ++KFD LG    T+++   D        +D   IP DD     L +          
Sbjct: 1077 HD-NILKFDILGHDDPTMIRMLQDL-----SGIDPLTIPPDDPGVMSLFSSPKILGVTPE 1130

Query: 614  ----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
                  GTLG+ +  +  +R  LE  +P    +++ +  L     +      +   NG  
Sbjct: 1131 QIQSKTGTLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINNGTC 1190

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQV---MQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            K+ ++    D ++ +     +  E     M+  +   G S    ++L++           
Sbjct: 1191 KLKNVIGCRDNIMMDLIHWGVKPEVAFFTMESVRHGKGISDENMEILKK----------- 1239

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
                                 + +        Y F K+HA AY +++ + AW K +YPV 
Sbjct: 1240 ----------------NDKIPDWYIPSCLKIKYMFPKAHATAYILMALRIAWFKVYYPVI 1283

Query: 787  FLAASMTLEMDNVEKIK---------------------------------KFCQDARQFN 813
            + A+  ++  D  + +                                  +   +  +  
Sbjct: 1284 YYASYFSVRADLFDLVAMSHGKNTVKAAMKEIQDKGMDVSAKDKSLLTVLEIANECLERG 1343

Query: 814  IQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            I+I    VN    +DFK+ D+        A+ G+G   A+ I+ A A++ F S ED  +R
Sbjct: 1344 IKIKMVDVNESEAMDFKIIDDHTILAPFNAVPGLGDNAAKQIVAARAEQKFLSKEDLATR 1403

Query: 872  VDSKKLNRRVLESL-VFAGALD 892
                +      E+  V  G  D
Sbjct: 1404 GKVSQTIMEYFENNGVLEGMPD 1425



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 41/94 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   + ++ +       Q AIAITD  ++ +  E      +  ++ + 
Sbjct: 329 VELHLHTNMSQLDATSTASDFIKTAKKFGQKAIAITDHADVQAFPEAYHTGASEKMKILY 388

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++     L + N  +  +     ++  V T
Sbjct: 389 GYEANMIDDHALLVLNPTEMDYRDREYVIFDVET 422


>gi|238852616|ref|ZP_04643026.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            gasseri 202-4]
 gi|238834762|gb|EEQ26989.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            gasseri 202-4]
          Length = 1432

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 171/922 (18%), Positives = 313/922 (33%), Gaps = 220/922 (23%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L    EG + + +LVS         +  R   S L++   +GL+  +G   
Sbjct: 602  RAKPSHVSVLALNQEGLKNMYKLVSLASTK-YFYRIPRTPKSELRKYH-KGLLFGSGCWQ 659

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY----------DRYRESQVVQ 202
            G +  +        A ++   +        Y+ +Q    Y          D     +++Q
Sbjct: 660  GDVFISMMQKGYDEAREKARFYD-------YLEVQPPAAYQTLIDDDLIKDEDELHEIIQ 712

Query: 203  ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
                L      P+VAT +S ++   +     +L+A       S  +R +  PD +  +  
Sbjct: 713  NIYKLGKELNKPVVATGDSHYVEPHEAIYRKILLAAQ----KSNPNRNKKLPDLHFYSTQ 768

Query: 259  EMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEEN 309
            EM+  FS L E       +ENT ++A +   I  + + + P  IE   +E  D+   +  
Sbjct: 769  EMLDAFSFLGEDVAKEIVIENTNKLADQIEEIAPIKSGLYPPHIENADQEMKDLTYNKAY 828

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL  K +                  +    R++ ELN I    ++  +LI    +  + K
Sbjct: 829  ELYGKPL-----------------PKIVEDRIELELNSIISNGYAVIYLISQRLVAKSNK 871

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFER-------------- 406
            +   VG  RGS   S+ A    IT+++PL         ++S  FE               
Sbjct: 872  DGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPKCKYSKFFENGEYGSGYDLPDKNC 930

Query: 407  ------------------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
                              FL      +PD D++F  D +     Y++  +G +   +  T
Sbjct: 931  PKCGTSLVKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNYIRVMFGPDNSFRAGT 990

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
              ++  K A   V                            +   D++      L +  +
Sbjct: 991  IATVADKTAYGYV----------------------------KHYEDENEL---HLRNAEL 1019

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRS---DLPVTQFNMKWI 563
            DRL   +    G+ R    H AGIV+      +    P+             T F+   I
Sbjct: 1020 DRL---AAGASGVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLSAAWLTTHFDFHSI 1076

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT---------- 613
                ++KFD LG    T+++   D        +D   IP DD     L +          
Sbjct: 1077 HD-NILKFDILGHDDPTMIRMLQDL-----SGIDPLTIPPDDPGVMSLFSSPKILGVTPE 1130

Query: 614  ----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
                  GTLG+ +  +  +R  LE  +P    +++ +  L     +      +   NG  
Sbjct: 1131 QIQSKTGTLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINNGTC 1190

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQV---MQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            K+ ++    D ++ +     +  E     M+  +   G S    ++L++           
Sbjct: 1191 KLKNVIGCRDNIMMDLIHWGVKPEVAFFTMESVRHGKGISDENMEILKK----------- 1239

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
                                 + +        Y F K+HA AY +++ + AW K +YPV 
Sbjct: 1240 ----------------NDKIPDWYIPSCLKIKYMFPKAHATAYILMALRIAWFKVYYPVI 1283

Query: 787  FLAASMTLEMDNVEKIK---------------------------------KFCQDARQFN 813
            + A+  ++  D  + +                                  +   +  +  
Sbjct: 1284 YYASYFSVRADLFDLVAMSHGKNTVKAAMKEIQDKGMDVSAKDKSLLTVLEIANECLERG 1343

Query: 814  IQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            I+I    VN    +DFK+ D+        A+ G+G   A+ I+ A A++ F S ED  +R
Sbjct: 1344 IKIKMVDVNESEAMDFKIIDDHTILAPFNAVPGLGDNAAKQIVAARAEQKFLSKEDLATR 1403

Query: 872  VDSKKLNRRVLESL-VFAGALD 892
                +      E+  V  G  D
Sbjct: 1404 GKVSQTIMEYFENNEVLEGMPD 1425



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 41/94 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   + ++ +       Q AIAITD  ++ +  E      +  ++ + 
Sbjct: 329 VELHLHTNMSQLDATSTASDFIKTAKKFGQKAIAITDHADVQAFPEAYHTGASEKMKILY 388

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++     L + N  +  +     ++  V T
Sbjct: 389 GYEANMIDDHALLVLNPTEMDYRDREYVIFDVET 422


>gi|222099063|ref|YP_002533631.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
 gi|221571453|gb|ACM22265.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
          Length = 1367

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 185/967 (19%), Positives = 342/967 (35%), Gaps = 191/967 (19%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAI----AITDTNNLFSAL-EFSQKACAAGIQ 68
            L++ S YS L+  +               +     A+ D          F +     GI 
Sbjct: 480  LRLKS-YS-LDSVV---------KKLGLGSFRHHRALDDARVTAQVFLRFIEMMKKIGIT 528

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +   +         K+ +             +LV    G + L  LVS  Y        
Sbjct: 529  KLSEME---------KLKDSVDFTAQKPYHCTILVQNRTGLKNLYRLVSDSYTK-YFHSV 578

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG----DRLYV 184
             RI  S L E   EGLI+ +   SG + RA    +S    + +  F         D +  
Sbjct: 579  PRILKSELIE-KREGLIVGSACISGELARAALEGASDSELEEIAKFYDYIEIMPLDVIEE 637

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            + +  R   +    ++ ++A     P+V T +  FL  ED +    L+A        Q  
Sbjct: 638  DEEVDRERLKEVYRKLYRIAKRLNKPVVMTGDVHFLDPEDAKGRSALLAPQSRNFERQ-- 695

Query: 245  RPRVTPDHYLKNRSEMVS----IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                 P  YL+   EM+     IF D   A E  VE   R + +++   P+  +      
Sbjct: 696  -----PALYLRTTEEMLEKAMEIFEDEEIAKEVVVENPNRIAEMIEEVQPLEKKLHPP-- 748

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              + +  +  +RN  +                  +   +R+  EL+ I    ++  +LI 
Sbjct: 749  --VIENADEIVRNLTMERAHELYGDPL------PEIVEKRIKKELDAIINHGYAVLYLIA 800

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
             + +Q +  +   VG  RGS   S+ A+ L IT+++PL                      
Sbjct: 801  KELVQKSMSDGYVVG-SRGSVGSSLVAHLLGITEVNPLPPHYRCPRCKYFEIVEDDRYGA 859

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE F+  +   +PD D++F  + +D+  R+V+  +G
Sbjct: 860  GYDLPDKSCPKCGTPLKKDGHDIPFETFMGFEGDKVPDIDLNFSGEYQDQAHRFVEELFG 919

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T  ++  K+A+  V    +    ++ R                         
Sbjct: 920  KDHVYRAGTINTIAEKSAVGYVKSYEEKTGKKLRR------------------------- 954

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG--DRPLSQLVPMY---RDVRSDLP 554
                    ++RL+ +   + G+ R    H  G++I   D+ +    P+     D  + + 
Sbjct: 955  ------AEMERLVSM---ITGVKRTTGQHPGGLMIIPKDKEVYDFTPIQYPANDREAGVF 1005

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT 614
             T F  + I    L+K D LG    T ++   D        +D   +P DD +T  + ++
Sbjct: 1006 TTHFAYETIHD-DLVKIDALGHDDPTFIKMLKDLTG-----IDPMSVPMDDPDTLAIFSS 1059

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-S 673
               LG+  +E  G      G+     E +  ++   RP     +V  +   +G +  + +
Sbjct: 1060 VKPLGVDPVEL-GSDVGTYGIPEFGTEFVRGMLVETRPKSFAELVRISGLSHGTDVWLNN 1118

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQ---IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
                I+    +   VI  ++ +M       +    +    + +R+   K I EEM+K+  
Sbjct: 1119 ARDWINLGYAKLSEVISCRDDIMNFLIHKGMEPSLAFKIMESVRKG--KGITEEMEKEMR 1176

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            R                  F    K   Y F K+HA AY  ++++ A+ K HYP++F AA
Sbjct: 1177 RL------------KTPEWFIESCKRIKYLFPKAHAVAYVSMAFRIAYFKVHYPLQFYAA 1224

Query: 791  SMTLEMDNVE---------KIKKFCQDARQF-----------------------NIQIMP 818
              T++ D  +          IK   ++ +                             +P
Sbjct: 1225 YFTIKGDQFDPTLVLKGKEAIKARLRELKMMTGKDAQKKNEESVLEVALEMILRGFSFLP 1284

Query: 819  PSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            P +  +    F +  N +      + G+G + A  I+ A  +KPF S+ED   R    K 
Sbjct: 1285 PDIFKSDAKKFLIEGNALRIPFNKLPGLGDSVAESIVRAREEKPFTSIEDLVRRTKVNKN 1344

Query: 878  NRRVLES 884
            +  +++S
Sbjct: 1345 HVELMKS 1351



 Score = 90.8 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+ +S L+  + + + +++      PA+AITD  N+ +   F   A +AGI+PI 
Sbjct: 273 VELHAHTKFSDLDAIMDIESYVNRAKEWGFPAVAITDHGNVQAIPYFYDAAKSAGIKPIF 332


>gi|269120698|ref|YP_003308875.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386]
 gi|268614576|gb|ACZ08944.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC 33386]
          Length = 1421

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 172/966 (17%), Positives = 342/966 (35%), Gaps = 194/966 (20%)

Query: 32   ILDKIAADQQPAIA----ITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD-NLKMT 86
            ++  +      A+A    I+  +N   A++ ++   +  I+ +        +Q   +  T
Sbjct: 517  LITDLKRFNLKALANYFNIS-LDNHHRAVDDAEATASIFIKMLNMVLSKGILQIYEINDT 575

Query: 87   NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146
             Q         + ++LV   EG + L EL+SR +L   G++  RI  S L+E     LI 
Sbjct: 576  FQNNVQTADTMNTMILVKNREGLKDLYELISRSHLDFFGERKPRIPKSMLKEKREHLLIA 635

Query: 147  LTGGS----SGPIDRAFFFN-SSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDR----- 194
             +  S     G + RA+    S    E+R   +   ++     Y+ +  +   +      
Sbjct: 636  SSANSVFRNDGELVRAYLRGMSKDEIEERADFYDYIEIHPAANYIEMVNNGEMESLDIAM 695

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                   +L       +VAT ++ +L E +     VL+  +     S K   ++    Y 
Sbjct: 696  EMNKYFYELGKKTGKIVVATGDAHYLEEWESVNRSVLILGSGMGHRSFKHDRKL----YF 751

Query: 255  KNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +   EM+  F+ L E  A E  +E   + + +++   PI   F   + +      E E+R
Sbjct: 752  RTTDEMLDAFAFLGEKEAYEVVIENTNKLADMIERLKPIPDGFYPPKIEGA----EEEVR 807

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                   +    +         +   +R++ EL  I    F+  +LI    ++ +  N  
Sbjct: 808  EMTYNRAKKLYGENL------PEILEKRIEHELEAIIGNGFAVLYLIAQKLVKKSLDNGY 861

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPL---------------------------------- 398
             VG  RGS   S+ AY + IT+++ +                                  
Sbjct: 862  LVG-SRGSVGSSIVAYMMEITEVNAMYPHYRCPNPECKHSEFTDMAGSGVDLPDKNCPKC 920

Query: 399  -------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                     S+ FE F+      +PD D++F  + + E+ RY +  +G + V +  T  +
Sbjct: 921  GTKYIKDGHSIPFEVFMGFKGDKVPDIDLNFSGEYQSEIHRYTEELFGKDHVFRAGTIST 980

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            L  + A   V +                                    E          +
Sbjct: 981  LAERNAFGYVKKYF----------------------------------EESGIHKRKAEI 1006

Query: 512  LEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKA 566
              I++  EG  +    H  G+++   D+ + +  P+ +       +   T F+   +++ 
Sbjct: 1007 ERIAKGCEGARKTTGQHPGGMIVLPSDKSIYEFTPIQKPANDKTAESITTHFDYHVMDEQ 1066

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ---- 622
             L+K D LG    T L+   D        +D+  IP DD +   +  +   LG+ Q    
Sbjct: 1067 -LVKLDILGHDDPTTLRILQDLTG-----IDIYQIPLDDPKVLSIFNSTEALGVTQKDIG 1120

Query: 623  ----------LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
                        +  +R+ L   +P    +++ +  L       ++ + N +   K  I 
Sbjct: 1121 SVIGSFGIPEFGTKFVREMLIETKPSSFAELVRISGLSHGT---DVWLNNAQDYVKAGIT 1177

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  +I             ++ +M       L    + +  + +R+    K KE+ ++  
Sbjct: 1178 TLSEVI-----------TVRDDIMNYLIDHGLDKSLAFTIMEFVRKGQPSKNKEKWEEY- 1225

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                       + +      +    +   Y F K HA AY +++ + A+ K +YP+EF  
Sbjct: 1226 --------AKAMKEKNIKEWYIESCEKIKYMFPKGHAVAYVMMAVRIAYFKVYYPLEFYT 1277

Query: 790  ASMTLEMDNVEKIKKF-----CQDAR---------------------------QFNIQIM 817
            A +  ++D     K +      ++AR                              I+++
Sbjct: 1278 AFLNRKVDGFSVTKMYKKLDELKEARKLLDEKMNLDVKEKGDLTLYEILIEMSHRGIELL 1337

Query: 818  PPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            P  +       F V D +I   L A+ G+G + A+ ++E      F SLED   R    K
Sbjct: 1338 PVDIYKSEASLFLVEDGKIRLPLVAVDGLGESVAKKVVEERKISEFISLEDILKRTKLNK 1397

Query: 877  LNRRVL 882
                ++
Sbjct: 1398 TVVELM 1403



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S + G +S  +++++       AIA+TD    +S   F+ KA     + I 
Sbjct: 314 VELHAHTNMSEMSGVVSAKDLINRAVEYGHNAIAVTDYGVAYS-FPFAYKAAPKDFKVIF 372

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G +  +   +   +             I+  + T
Sbjct: 373 GVEAYVVDDEQNMVERPKDAMIEQEEYIIFDIET 406


>gi|164688523|ref|ZP_02212551.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM 16795]
 gi|164602936|gb|EDQ96401.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM 16795]
          Length = 1432

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 170/949 (17%), Positives = 333/949 (35%), Gaps = 192/949 (20%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F       G + +      +   D  K+  +          I L+     G + L ++
Sbjct: 574  IKFLDMLQKKGAKKLSDVNEVLGGIDYTKLKTK---------HITLIAQNLVGVKNLYKI 624

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  ++ +   ++ RI  S L E   EG+I+ +   +G + +A   N +    K ++   
Sbjct: 625  VSDAHV-NHFYRAPRILKSVLLE-HKEGIIVGSACEAGEVFQAVKQNKNDDEIKEIIDLY 682

Query: 176  K------LFGDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +  +R  +     +  D  R    +++++A       VAT +  F+ + +   
Sbjct: 683  DYIEVMPIDNNRFMIRNGEVKDEDELRDLNRRMIEIAKKFGKIPVATGDVHFIDKHEAVF 742

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL------ENTVEIARRC 281
              VL      ++  ++           +   EM+  F  L E L      ENT ++A   
Sbjct: 743  RRVLKYSQGFSLDDEETYLH------FRTTDEMLEEFKYLGEELAYEVVVENTNKVADMV 796

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
               L +     P  IE          + ELR         R+    +      +  ++RL
Sbjct: 797  EDFLPIPNETFPPVIEGS--------DTELREMCYNKA-KRIYGDPM-----PEVVKKRL 842

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-- 399
            D ELN I    ++  ++I    +  +  +   VG  RGS   S+ A    IT+++PL   
Sbjct: 843  DRELNSIISNGYAVMYIIAQKLVTKSLADGYLVG-SRGSVGSSLAATMSDITEVNPLPAH 901

Query: 400  -----------------------------------------FSLLFERFLNPDRMSMPDF 418
                                                       + FE FL  +    PD 
Sbjct: 902  YICENEDCKYSYFYAVGEWGSGVDLPDKDCPKCGRKLKKDGHDIPFEVFLGFEGDKEPDI 961

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F    +  + +Y +  +G   V +  T G++  K A     + +             
Sbjct: 962  DLNFSGSYQPVIHKYTEELFGEGHVYRAGTIGTVADKTAYGYAKKYV------------- 1008

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD-- 536
                                 E    D     +L +++   G+ R +  H  G+++    
Sbjct: 1009 ---------------------EENDLDVPSAEVLRLAKGCTGVKRTSGQHPGGVMVIPNY 1047

Query: 537  RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            + +  + P+          +  T F+   I    ++K D LG    T+++   D      
Sbjct: 1048 KEVYDITPIQYPANDVNCGVITTHFDYHSI-SGRILKLDILGHDVPTIIRMIEDITG--- 1103

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              +D + IP DD ET  + T+   LG+   E +        +       +  ++   +P 
Sbjct: 1104 --LDATTIPLDDKETMSIFTSTEALGVTPEEIN-CPIGSLAIPEFGTSFVRQMLLDTKPT 1160

Query: 654  PIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSE 709
                +V  +   +G +  ++    L+   + E + VI  ++ +M       L    + + 
Sbjct: 1161 TFAELVRISGLSHGTDVWLNNAQDLVVDKVVEFKDVISTRDDIMNYLLFKGLPPKMAFTI 1220

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             + +R+  G K           FI   +K+ + +    +  ++      Y F K+HA AY
Sbjct: 1221 MENVRKGKGLK---------PEFIEEMNKHDVPQWYVDSCQKI-----KYMFPKAHAVAY 1266

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQDARQFN------- 813
             ++S++ A+ K HYP  F A   T +  +          + IK+   +  +         
Sbjct: 1267 VMMSFRLAYYKVHYPAAFYATYFTTKAQDFDADLIVGGLDSIKQKINEIHELGNDATAKD 1326

Query: 814  -----------------IQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGTTTARHIM 854
                             I+I+P  +       F V D+      + A++GVG   A +I 
Sbjct: 1327 KTMLTVLEVALEMYARKIKIIPVDIYKSDATKFIVVDDSTILPPMIALQGVGENAAINIQ 1386

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLL 902
            +      F S ED   R    K+++ V+E+L   G+L D    +++ L 
Sbjct: 1387 KERESGEFISKEDLRKRT---KISKTVVETLSNHGSLNDMSEKNQLSLF 1432



 Score = 74.6 bits (182), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++       ++ + +     AIAITD   + +  E      A GI+ I+
Sbjct: 333 VELHAHTQMSSMDALCQTKKLVKQASQWGHKAIAITDHGVVQAFPEAMDAGKANGIK-IL 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
                  ++DN  +  +      +   +V  + T  G+  
Sbjct: 392 YGVEGYLVEDNAPIIREANDKDLSQTFVVFDLET-TGFSN 430


>gi|168210465|ref|ZP_02636090.1| PHP domain protein [Clostridium perfringens B str. ATCC 3626]
 gi|170711464|gb|EDT23646.1| PHP domain protein [Clostridium perfringens B str. ATCC 3626]
          Length = 416

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 143/416 (34%), Positives = 222/416 (53%), Gaps = 27/416 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6   FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +GC++ +  +     +N           +VLLV   +GY+ L+++VS   +        R
Sbjct: 66  LGCEVYVVPKSRKIKSN---DEDNKTYHLVLLVKNEKGYENLMKIVSVASIEG-FYYKPR 121

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I   +L+E  +EG+I L+    G + +A    +   A +  + ++  F D  Y+ LQ H 
Sbjct: 122 IDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAAIFYRDTFKDGFYLELQNHG 180

Query: 191 GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R  
Sbjct: 181 IEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRYP 240

Query: 250 PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            D  YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F   E      E  
Sbjct: 241 SDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEG----VEPF 296

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYR----------------QRLDFELNVIARMK 352
             LR     GL  RL +    K     D                  +RL++EL VI +M 
Sbjct: 297 EYLRKTCFDGLIDRLEELKPLKEKGIYDIDKVYEIGENNEKVKEDIERLEYELGVIKQMG 356

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
           +  YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFER L
Sbjct: 357 YVDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERKL 412


>gi|15643342|ref|NP_228386.1| DNA polymerase III PolC [Thermotoga maritima MSB8]
 gi|6225287|sp|Q9ZHF6|DPO3_THEMA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|4981093|gb|AAD35661.1|AE001732_6 DNA polymerase III, alpha subunit [Thermotoga maritima MSB8]
 gi|3930535|gb|AAC80438.1| DNA polymerase III [Thermotoga maritima]
          Length = 1367

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 185/941 (19%), Positives = 332/941 (35%), Gaps = 201/941 (21%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            L F +     GI  +   +   D  D   +               +LV   +G + L +L
Sbjct: 514  LRFVEMMKKIGITKLSEMEKLKDTIDYTALK---------PFHCTILVQNKKGLKNLYKL 564

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ-VAEKRLLTF 174
            VS  Y+        RI  S L E   EGL++ +   SG + RA    +S    E+    +
Sbjct: 565  VSDSYIK-YFYGVPRILKSELIE-NREGLLVGSACISGELGRAALEGASDSELEEIAKFY 622

Query: 175  KKLFGDRLYVNLQRHRGYDRYRESQ----VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              +    L V  +     DR R  +    + ++A      +V T +  FL  ED      
Sbjct: 623  DYIEVMPLDVIAEDEEDLDRERLKEVYRKLYRIAKKLNKFVVMTGDVHFLDPEDARGRAA 682

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS----IFSDLPEALENTVEIARRCSFILQ 286
            L+A   +            P  YL+   EM+     IF D   A E  +E   R + +++
Sbjct: 683  LLAPQGNRNFEN------QPALYLRTTEEMLEKAIEIFEDEEIAREVVIENPNRIADMIE 736

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               P+  +        I +  +  +RN  +                  +  ++R++ ELN
Sbjct: 737  EVQPLEKKLHPP----IIENADEIVRNLTMKRAYEIYGDPL------PEIVQKRVEKELN 786

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I    ++  +LI  + +Q +  +   VG  RGS   S+ A  L IT+++PL        
Sbjct: 787  AIINHGYAVLYLIAQELVQKSMSDGYVVG-SRGSVGSSLVANLLGITEVNPLPPHYRCPE 845

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                                + FE F+  +   +PD D++F  +
Sbjct: 846  CKYFEVVEDDRYGAGYDLPNKNCPRCGAPLRKDGHGIPFETFMGFEGDKVPDIDLNFSGE 905

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             ++   R+V+  +G + V +  T  ++  ++A   VG           +L K        
Sbjct: 906  YQERAHRFVEELFGKDHVYRAGTINTIAERSA---VGYVRSYEEKTGKKLRKA------- 955

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG--DRPLSQLV 543
                                  ++RL+ +   + G+ R    H  G++I   D+ +    
Sbjct: 956  ---------------------EMERLVSM---ITGVKRTTGQHPGGLMIIPKDKEVYDFT 991

Query: 544  PMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+     D  + +  T F  + I    L+K D LG    T ++   D        +D   
Sbjct: 992  PIQYPANDRNAGVFTTHFAYETIHD-DLVKIDALGHDDPTFIKMLKDLTG-----IDPMT 1045

Query: 601  IPFDDHETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            IP DD +T                L +  GT GI +  +  +R  L   +P    +++ +
Sbjct: 1046 IPMDDPDTLAIFSSVKPLGVDPVELESDVGTYGIPEFGTEFVRGMLVETRPKSFAELVRI 1105

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ---IAQLLS 703
              L       ++ + N R             I+    +   VI  ++ +M       +  
Sbjct: 1106 SGLSHGT---DVWLNNAR-----------DWINLGYAKLSEVISCRDDIMNFLIHKGMEP 1151

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
              +    + +R+   K I EEM+ +  R                  F    K   Y F K
Sbjct: 1152 SLAFKIMENVRKG--KGITEEMESEMRRL------------KVPEWFIESCKRIKYLFPK 1197

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQF-- 812
            +HA AY  ++++ A+ K HYP++F AA  T++ D  +          IK+  ++ +    
Sbjct: 1198 AHAVAYVSMAFRIAYFKVHYPLQFYAAYFTIKGDQFDPVLVLRGKEAIKRRLRELKAMPA 1257

Query: 813  ---------------------NIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                                     +PP +  +    F +  N +      + G+G + A
Sbjct: 1258 KDAQKKNEVSVLEVALEMILRGFSFLPPDIFKSDAKKFLIEGNSLRIPFNKLPGLGDSVA 1317

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I+ A  +KPF S+ED   R    K +  +++SL   G L
Sbjct: 1318 ESIIRAREEKPFTSVEDLMKRTKVNKNHIELMKSLGVLGDL 1358



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 2   TQYLEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            + ++KSP   V L  H+ +S  +    +N  + +      PAIA+TD  N+ +   F  
Sbjct: 260 AKRMDKSPVKRVELHAHTKFSDQDAITDVNEYVKRAKEWGFPAIALTDHGNVQAIPYFYD 319

Query: 61  KACAAGIQPII 71
            A  AGI+PI 
Sbjct: 320 AAKEAGIKPIF 330


>gi|227890229|ref|ZP_04008034.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849231|gb|EEJ59317.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 1432

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 169/912 (18%), Positives = 313/912 (34%), Gaps = 200/912 (21%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L    EG + + +LVS         +  R   S L++   +GL+  +G   
Sbjct: 602  RAKPSHMSVLALNQEGLKNMYKLVSLASTK-YFYRIPRTPKSELRKYH-KGLLFGSGCWQ 659

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGD-----RLYVNLQRHRGYDRYRE--SQVVQLAY 205
            G +  +        A ++   +  L        +  +     +  D   E    + +L  
Sbjct: 660  GDVFISMMQKGYDEAREKARFYDYLEVQPPAAYQTLIEDDLIKDEDELHEIIQNIYKLGK 719

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                P+VAT++S ++   +     +L+A          +R +  PD +  +  EM+  FS
Sbjct: 720  ELNKPVVATSDSHYVEPHEAIYRKILLAAQKG----NPNRNKNLPDLHFYSTQEMLDAFS 775

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAV 316
             L E       ++NT ++A +   I  + + + P  IE   +E  D+   +  EL  K +
Sbjct: 776  FLGEDVAKEIVIDNTNKLADQIEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPL 835

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                              +    R++ ELN I    ++  +LI    +  + K+   VG 
Sbjct: 836  -----------------PKIVEDRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVG- 877

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFSLLFER--------------------- 406
             RGS   S+ A    IT+++PL         ++S  FE                      
Sbjct: 878  SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSKFFENGEYGSGYDLPDKECPKCGTPL 937

Query: 407  -----------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                       FL      +PD D++F  D +     Y++  +G +   +  T  ++  K
Sbjct: 938  VKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNYIRVMFGPDNSFRAGTIATVADK 997

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V                            +   D++      L +  +DRL   +
Sbjct: 998  TAYGYV----------------------------KHYEDENEL---HLRNAELDRL---A 1023

Query: 516  QKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIK 570
                G+ R    H AGIV+      +    P+             T F+   I    ++K
Sbjct: 1024 VGASGVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHD-NILK 1082

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKG 616
            FD LG    T+++   D        VD   IP DD     L +                G
Sbjct: 1083 FDILGHDDPTMIRMLQDL-----SGVDPLTIPPDDPGVMSLFSSPEILGVTPEQIQSKTG 1137

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            TLG+ +  +  +R  LE  +P    +++ +  L     +      +   NG  K+ ++  
Sbjct: 1138 TLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINNGTCKLKNVIG 1197

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
              D ++ +     +  E        ++ ++  E+    R +  +  E +           
Sbjct: 1198 CRDNIMMDLIHWGVKPE--------VAFFT-MESVRHGRGISDENMEIL----------- 1237

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             KN        + +        Y F K+HA AY +++ + AW K +YPV + A+  ++  
Sbjct: 1238 KKN----DKIPDWYIPSCLKIKYMFPKAHATAYILMALRIAWFKVYYPVIYYASYFSVRA 1293

Query: 797  DNVEKIK---------------------------------KFCQDARQFNIQIMPPSVNT 823
            D  + +                                  +   +  +  I+I    VN 
Sbjct: 1294 DLFDLVAMSHGKNTVKAAMKEIQDKGMDVSAKDKSLLTVLEIANECLERGIKIKMVDVNE 1353

Query: 824  P-CVDFKVGDNRIYY-SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                DFK+ D+        A+ G+G   A+ I+ A A++ F S ED  +R    +     
Sbjct: 1354 SEATDFKIIDDHTILAPFNAVPGLGDNAAKQIVTARAEQKFLSKEDLATRGKVSQTIMEY 1413

Query: 882  LESL-VFAGALD 892
             E+  V  G  D
Sbjct: 1414 FENNGVLEGMPD 1425



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 41/94 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   + ++ +       Q AIAITD  ++ S  E      +  ++ + 
Sbjct: 329 VELHLHTNMSQLDATSTASDFIKTAKKFGQKAIAITDHADVQSFPEAYHTGASEKMKILY 388

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++     L + N  +  +     ++  V T
Sbjct: 389 GYEANMIDDHALLVLNPTEMDYRDREYVIFDVET 422


>gi|110803674|ref|YP_697668.1| DNA polymerase III, subunit alpha (dnaE)-like protein [Clostridium
           perfringens SM101]
 gi|110684175|gb|ABG87545.1| DNA polymerase III, subunit alpha (dnaE)-like protein [Clostridium
           perfringens SM101]
          Length = 416

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 143/416 (34%), Positives = 221/416 (53%), Gaps = 27/416 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6   FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +GC++ +  +     +N           +VLLV   +GY+ L+++VS   +        R
Sbjct: 66  LGCEVYVVPKSRKIKSN---DEDNKTYHLVLLVKNEKGYENLMKIVSVASIEG-FYYKPR 121

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I   +L+E  +EG+I L+    G + +A    +   A +    ++  F D  Y+ LQ H 
Sbjct: 122 IDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAATFYRDTFKDGFYLELQNHG 180

Query: 191 GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R  
Sbjct: 181 IEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRYP 240

Query: 250 PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            D  YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F   E      E  
Sbjct: 241 SDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEG----VEPF 296

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYR----------------QRLDFELNVIARMK 352
             LR     GL  RL +    K     D                  +RL++EL VI +M 
Sbjct: 297 EYLRKTCFDGLIDRLEELKPLKEKEIYDIDKVYEIGENNEKVKEDIERLEYELGVIKQMG 356

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
           +  YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFER L
Sbjct: 357 YVDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERKL 412


>gi|299534745|ref|ZP_07048075.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
 gi|298729833|gb|EFI70378.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
          Length = 1443

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 166/931 (17%), Positives = 317/931 (34%), Gaps = 187/931 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++      +      N  +               +L     G + L ++VS  +      
Sbjct: 588  LKDADELAIKYHDDFNKHIGGGDAYKKGRPMHCTILAVDNAGLKNLFKIVSHSHTKT-FY 646

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLFG 179
            +  R+  + L++   EGL++ +G S+G +       S + AEK    +       K ++ 
Sbjct: 647  RVPRVTRAVLEQY-REGLLVGSGCSNGEVFETMMNKSPEEAEKVARFYDYIEVQPKAVYA 705

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +  N+ R          ++V+L    + P+VAT N  +L   D     +L+       
Sbjct: 706  PLIERNVVRDEWTLEDIIRKLVKLGKKLDKPVVATGNVHYLDPTDGMFRQILIGSQGGAN 765

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            +  + +    P+ + +   EM+  F  L    A E  V  A++ +  +    PI      
Sbjct: 766  ILNRSKL---PEVHFRTTDEMLKEFDFLGPDLAKEVVVTNAQKVAASIGDVKPIKDDLYT 822

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E+ N           +         +  + R++ EL  I    F   +
Sbjct: 823  PKIEG----SDDEVTNLTYEMAHRIYGEEL------PEIVKARIEKELKSILGHGFGVIY 872

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI A  ++ +  +   VG  RGS   S+ A  + IT+++PL                   
Sbjct: 873  LISAKLVKKSLADGYLVG-SRGSVGSSLVATFMEITEVNPLPPHYICPSCKHSEFFDDGS 931

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + + +   Y + 
Sbjct: 932  VSSGFDLPNKDCTECGTPYKKDGQDIPFETFLGFKGDKVPDIDLNFSGEYQPQAHNYTKV 991

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V                             A   + 
Sbjct: 992  LFGEDYVFRAGTIGTVAEKTAYGYVKGY--------------------------ASDHNL 1025

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRS 551
             FR A      VDRL+   Q   G+ R    H  GI++      +    P+        +
Sbjct: 1026 HFRGA-----EVDRLV---QGCTGVKRTTGQHPGGIIVVPDYMDIYDFSPVQFPADAQDA 1077

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    ++K D LG    T+++   D        +D   IP DD     +
Sbjct: 1078 EWRTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPVVMKI 1131

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1132 FSSPESLGVTEKQIGCKTGTLGIPEFGTRFVRQMLEDTKPSTFSELVQISGLSHGTDVWL 1191

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
                    N +E I +   ++  ++     +++Y    +    L    +    + +R+  
Sbjct: 1192 G-------NAQELIQNGTCVLKEVIGCRDDIMVY----LIYQGLEPSLAFKIMESVRKG- 1239

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K + EE + +            +        +    K   Y F K+HAAAY +++ + A
Sbjct: 1240 -KGLSEEFEAE------------MLANKVPGWYIESCKKIKYMFPKAHAAAYVLMAVRIA 1286

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKF---------CQDARQFNIQIMPPSVN------ 822
            W K H+P+ + AA  T+  D+ + I              +     +       N      
Sbjct: 1287 WFKVHFPILYYAAYFTVRADDFDLIAMVQGSQMIRARIDEINMKGLDASTKEKNLLTVLE 1346

Query: 823  -------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
                               +   +F +  N +     AI G+GT  A+ I+ A  +  F 
Sbjct: 1347 LALEMCERGMSFQKVDLYRSQASEFVIDGNSLIPPFDAIPGLGTNVAKTIVAAREEGEFL 1406

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            S ED   R    ++++ ++E +   G L+  
Sbjct: 1407 SKEDLQQR---GRVSKTLIEYMDQLGCLEGM 1434



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ + A    PAIAITD   + S  E        GI+ I 
Sbjct: 342 VELHLHTPMSQMDAVTPVDRLVAQAAKWGHPAIAITDHAVVQSFPEAYAAGKKHGIKIIY 401


>gi|169344046|ref|ZP_02865034.1| DNA polymerase III, alpha subunit [Clostridium perfringens C str.
           JGS1495]
 gi|169297781|gb|EDS79878.1| DNA polymerase III, alpha subunit [Clostridium perfringens C str.
           JGS1495]
          Length = 416

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 143/416 (34%), Positives = 221/416 (53%), Gaps = 27/416 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6   FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +GC++ +  +     +N           +VLLV   +GY+ L+++VS   +        R
Sbjct: 66  LGCEVYVVPKSRKIKSN---DEDNKTYHLVLLVKNEKGYENLMKIVSVASIEG-FYYKPR 121

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I   +L+E  +EG+I L+    G + +A    +   A +    ++  F D  Y+ LQ H 
Sbjct: 122 IDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAATFYRDTFKDGFYLELQNHG 180

Query: 191 GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R  
Sbjct: 181 IEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRYP 240

Query: 250 PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            D  YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F   E      E  
Sbjct: 241 SDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEG----VEPF 296

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYR----------------QRLDFELNVIARMK 352
             LR     GL  RL +    K     D                  +RL++EL VI +M 
Sbjct: 297 EYLRKTCFDGLIDRLEELKPLKEKGIYDIDKVYEIGENNEKVKEDIERLEYELGVIKQMG 356

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
           +  YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFER L
Sbjct: 357 YVDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERKL 412


>gi|323340059|ref|ZP_08080325.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
 gi|323092565|gb|EFZ35171.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
          Length = 1448

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 162/924 (17%), Positives = 309/924 (33%), Gaps = 190/924 (20%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
                 N  M              ++L  T +G + L +L S   +++   +  R+  S L
Sbjct: 599  YHDDFNKHMVQPDTYKQQHPFHAIVLAKTQDGLKNLFKLASDS-MVNHFYRVARVPRSVL 657

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRH 189
            ++   EGL++ +G + G +  A      + A+ +   +       K L+   L   L + 
Sbjct: 658  EKY-REGLLVGSGCADGEVFTAMMQKGYETAKAKAKNYDYLEIQPKALYAPLLERELVKD 716

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                      +V+LA   + P+VA+ +  F+++ED     +L+        +  +R +  
Sbjct: 717  EEELEDIIKNMVKLAEELDKPIVASGDVHFMNKEDAIYRKILIHSQGGA--NPLNRLKNL 774

Query: 250  PDHYLKNRSEMVSIFSDLPEALEN--TVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            PD + +   EM+  F+ L   L     V+   + + +     P+  +    +        
Sbjct: 775  PDAHFRTTDEMLDEFAFLGPELAKKVVVDDPNKVAAMCDEITPVKDKLYTPKMPGA---- 830

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+++RN  +                  +  + RLD EL  +    FS  +LI    +  +
Sbjct: 831  EDDIRNLTMNKAHELYGDPL------PEIVQARLDKELKSVIGNGFSVIYLIAQKLVFKS 884

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL------------------------- 402
             K+   VG  RGS   S+ A    IT+++PL                             
Sbjct: 885  NKDGYLVG-SRGSVGSSLVATMTGITEVNPLPPHYRCPECKYSEFFTKGEYGSGYDLPDK 943

Query: 403  ----------------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                             FE FL      +PD D++F  D +     Y +  +G   V + 
Sbjct: 944  KCPKCQTQLVKDGQEIPFETFLGFKGNKVPDIDLNFSGDYQPVAHNYTKVLFGENNVFRA 1003

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V                                   R  E  L   
Sbjct: 1004 GTIGTVADKTAYGYVKAY-------------------------------ERDNELTLRSA 1032

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMK 561
             VDRL   ++   G+ R    H AGI++      +    P+     DV +    T F+  
Sbjct: 1033 EVDRL---AKGATGVKRTTGQHPAGILVVPDYMDIYDFTPIQYPADDVNAAWRTTHFDFH 1089

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT-------- 613
             I    ++K D LG    T+++   D        ++   IP DD     L +        
Sbjct: 1090 SIHD-NILKLDCLGHDDPTMIRMLQDLSG-----IEPKTIPTDDPGVMALFSGTEILGVT 1143

Query: 614  ------TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
                    GTLGI +  +  +R  LE  +P    +++ +  L     +          N 
Sbjct: 1144 EEQIQSKTGTLGIPEFGTRFVRGMLEETKPKTFAELLKISGLSHGTDVWLG-------NA 1196

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEE 724
            +E I +    +  ++         ++ +M     +      +    + +R+         
Sbjct: 1197 EELIQNKTVTMPEVIG-------CRDDIMMDLIHMGVESDLAFKIMEHVRKG-------- 1241

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
                  R I    +  + K      +        Y F K+HAAAY +++ + A+ K +YP
Sbjct: 1242 ------RGIPDEWQEEMHKANVPEWYIGACLKIKYMFPKAHAAAYVLMALRIAYFKVYYP 1295

Query: 785  VEFLAASMTLEMDNVEKIK---------------------------------KFCQDARQ 811
            + + +A  ++  D+ + +                                  +   +  +
Sbjct: 1296 LIYYSAYFSVRADDFDLVAMANGKESVKARMKEINEKGNDVSAKEKNLLTVLELANEMLE 1355

Query: 812  FNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
               +     +      D+ +  N +    +AI G+G   A+ I+ A  ++ F S +D   
Sbjct: 1356 RGFEFKMVDIKRSDASDWLIEGNTLLAPFSAIPGLGLNVAKQIVAAREEREFISKQDLKE 1415

Query: 871  RVDSKKLNRRVL-ESLVFAGALDC 893
            R    +     + E+ V  G  D 
Sbjct: 1416 RGKVSQSLVDFMTENHVLDGLSDS 1439



 Score = 78.5 bits (192), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 41/94 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S+++   S+++ + + A   Q AIAITD + L +  E        G++ + 
Sbjct: 342 VELHLHSNMSMMDATNSISDFVAQAAKWGQKAIAITDHSTLQAFPEAHSAGQKNGVKILY 401

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V    T
Sbjct: 402 GVEANVVEDSQPIAYNEAHEELKHATYVVFDTET 435


>gi|229918664|ref|YP_002887310.1| DNA polymerase III, subunit alpha [Exiguobacterium sp. AT1b]
 gi|229470093|gb|ACQ71865.1| DNA polymerase III, alpha subunit [Exiguobacterium sp. AT1b]
          Length = 1430

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 171/907 (18%), Positives = 312/907 (34%), Gaps = 191/907 (21%)

Query: 95   TVPSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG 153
                  +     + G + L EL+S  ++ D   +  R+  S L +   EGL++ +   +G
Sbjct: 597  RPFHATIYAKNKKPGLRHLYELISLSHI-DYLYRMARMPRSELVK-RREGLLIGSACDNG 654

Query: 154  PIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYT 206
             I  A    S    EK +  +   ++    LY       +  +    R    +++++A  
Sbjct: 655  EIFDAALNKSDDELEKMMSFYDFIEIHPPALYHHLIDKEIVANELELREIIKRIIRVAEK 714

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
             ELP+ AT N  +L   D    ++L+            +    P  + +   EM+  F  
Sbjct: 715  AELPVCATGNVHYLDRSDRSYREILIRTQGGANFINTRKE--LPHAHFRTTKEMMEEFKF 772

Query: 267  LPEALENTVEIA--RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
            L + L   + I      +  ++    I       + +      ++E+RN +         
Sbjct: 773  LGDDLAREIVITNPNAIADQIESIQIIPDDLYTPKIEGA----DDEVRNMSYDMAR---- 824

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +I      +    RL+ EL  I    F+  +LI    ++ +  +   VG  RGS   S
Sbjct: 825  --SIYGDELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSS 881

Query: 385  VTAYALTITDIDPLR-----------------------------------------FSLL 403
            + A    IT+++PL                                            + 
Sbjct: 882  LVATMTEITEVNPLPPHYVCPNCQHSHFFNDGSVGSGYDLPDKECPECGTWYKKDGHDIP 941

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL      +PD D++F  + +     Y +  +G E V +  T G++  K A   V  
Sbjct: 942  FETFLGFKGDKVPDIDLNFSGEYQPHAHAYTKVLFGEEYVYRAGTIGTIADKTAYGYVKG 1001

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
                                       A  +D  +R A      VDRL+     + G+ R
Sbjct: 1002 Y--------------------------ATENDKIYRNA-----EVDRLVS---GVTGVKR 1027

Query: 524  HASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                H  GI++      ++ + P+     D  S+   T F+   I    L+K D LG   
Sbjct: 1028 TTGQHPGGIIVVPDYMDIADISPIQYPADDNSSEWKTTHFDFHSIHD-NLLKLDILGHDD 1086

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGIFQLE 624
             T+++   D        +D   IP DD     +               +  GTLGI +  
Sbjct: 1087 PTVIRMLQDL-----SGIDPKTIPTDDPTVMKIFSSPEVLGVTPEQIESKTGTLGIPEFG 1141

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +  +RQ LE  +P    +++ +  L     +                 + + LI     E
Sbjct: 1142 TKFVRQMLEETKPSTFSELVQISGLSHGTDVWLG--------------NANELIYNGTCE 1187

Query: 685  TQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
             + VI  ++ +M     A L   ++    + +R+   K + EEM+ +            +
Sbjct: 1188 LKDVIGCRDDIMVYLIYAGLEPSFAFKIMESVRKG--KGLTEEMESE------------M 1233

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +      +    K   Y F K+HA AY +++ + A+ K H+P+ + A   T+   + + 
Sbjct: 1234 RENDVPEWYISSCKKIKYMFPKAHATAYVLMAVRIAYFKVHHPILYYATYFTVRAGDFDL 1293

Query: 801  --------KIKKFCQDARQFNIQIMPPS-------------------------VNTPCVD 827
                     ++K   D R+                                    +   +
Sbjct: 1294 SAMIKGPQAVRKAMSDIREKGFDATAKDKGLHTVLELALEMLERGMKFQNIDLYRSSATE 1353

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL-V 886
            F + DN +     A+ G+GT  A+ I+EA  +  F S ED   R    K     L+++  
Sbjct: 1354 FLIEDNTLIPPFNAVDGLGTNAAKAIVEAREEGQFLSKEDLRKRAKLSKTVIETLDTMKC 1413

Query: 887  FAGALDC 893
              G  D 
Sbjct: 1414 LEGLPDE 1420



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   +++ ++ + A     AIAITD   + +  E         I+ + 
Sbjct: 324 VELHAHTQMSQMDAVTNVSALVARAAKWGHRAIAITDHAGVQAFPEAYYAGKKNDIKVLY 383

Query: 72  GC 73
           G 
Sbjct: 384 GV 385


>gi|168212733|ref|ZP_02638358.1| DNA polymerase III, alpha subunit [Clostridium perfringens CPE str.
           F4969]
 gi|170715762|gb|EDT27944.1| DNA polymerase III, alpha subunit [Clostridium perfringens CPE str.
           F4969]
          Length = 416

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 143/416 (34%), Positives = 221/416 (53%), Gaps = 27/416 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6   FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +GC++ +  +     +N           +VLLV   +GY+ L+++VS   +        R
Sbjct: 66  LGCEVYVVPKSRKIKSN---DEDNKTYHLVLLVKNEKGYENLMKIVSVASIEG-FYYKPR 121

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I   +L+E  +EG+I L+    G + +A    +   A +    ++  F D  Y+ LQ H 
Sbjct: 122 IDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAATFYRDTFKDGFYLELQNHG 180

Query: 191 GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R  
Sbjct: 181 IEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRYP 240

Query: 250 PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            D  YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F   E      E  
Sbjct: 241 SDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEG----VEPF 296

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYR----------------QRLDFELNVIARMK 352
             LR     GL  RL +    K     D                  +RL++EL VI +M 
Sbjct: 297 EYLRKTCFDGLIDRLEELKPFKEKGIYDIDKVYEIGENNEKVKEDIERLEYELGVIKQMG 356

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
           +  YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFER L
Sbjct: 357 YVDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERKL 412


>gi|42519364|ref|NP_965294.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
 gi|41583652|gb|AAS09260.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
          Length = 1432

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 169/912 (18%), Positives = 311/912 (34%), Gaps = 200/912 (21%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L    EG + + +LVS         +  R   S L++   +GL+  +G   
Sbjct: 602  RAKPSHMSVLALNQEGLKNMYKLVSLASTK-YFYRIPRTPKSELRKYH-KGLLFGSGCWQ 659

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGD-----RLYVNLQRHRGYDRYRE--SQVVQLAY 205
            G +  +        A ++   +  L        +  +     +  D   E    + +L  
Sbjct: 660  GDVFISMMQKGYDEAREKARFYDYLEVQPPAAYQTLIEDDLIKDEDELHEIIQNIYKLGK 719

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                P+VAT++S ++   +     +L+A         K+     PD +  +  EM+  FS
Sbjct: 720  ELNKPVVATSDSHYVEPHEAIYRKILLAAQKGNSNRNKNL----PDLHFYSTQEMLDAFS 775

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAV 316
             L E       ++NT ++A +   I  + + + P  IE   +E  D+   +  EL  K +
Sbjct: 776  FLGEDVAKEIVIDNTNKLADQIEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPL 835

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                              +    R++ ELN I    ++  +LI    +  + K+   VG 
Sbjct: 836  -----------------PKIVEDRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVG- 877

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFSLLFER--------------------- 406
             RGS   S+ A    IT+++PL         ++S  FE                      
Sbjct: 878  SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSKFFENGEYGSGYDLPDKECPKCGTPL 937

Query: 407  -----------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                       FL      +PD D++F  D +     Y++  +G +   +  T  ++  K
Sbjct: 938  VKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNYIRVMFGPDNSFRAGTIATVADK 997

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V                            +   D++      L    +DRL   +
Sbjct: 998  TAYGYV----------------------------KHYEDENEL---HLRKAELDRL---A 1023

Query: 516  QKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIK 570
                G+ R    H AGIV+      +    P+             T F+   I    ++K
Sbjct: 1024 AGASGVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHD-NILK 1082

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKG 616
            FD LG    T+++   D        VD   IP DD     L +                G
Sbjct: 1083 FDILGHDDPTMIRMLQDL-----SGVDPLTIPPDDPGVMSLFSSPEILGVTSEQIQSKTG 1137

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            TLG+ +  +  +R  LE  +P    +++ +  L     +      +   NG  K+ ++  
Sbjct: 1138 TLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINNGTCKLKNVIG 1197

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
              D ++ +     +  E        ++ ++  E+    R +  +  E +           
Sbjct: 1198 CRDNIMMDLIHWGVKPE--------VAFFT-MESVRHGRGISDENMEIL----------- 1237

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             KN        + +        Y F K+HA AY +++ + AW K +YPV + A+  ++  
Sbjct: 1238 KKN----DKIPDWYIPSCLKIKYMFPKAHATAYILMALRIAWFKVYYPVIYYASYFSVRA 1293

Query: 797  DNVEKIK---------------------------------KFCQDARQFNIQIMPPSVNT 823
            D  + +                                  +   +  +  I+I    VN 
Sbjct: 1294 DLFDLVAMSHGKNTVKAAMKEIQDKGMDVSAKDKSLLTVLEIANECLERGIKIKMVDVNE 1353

Query: 824  P-CVDFKVGDNRIYY-SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                DFK+ D+        A+ G+G   A+ I+ A A++ F S ED  +R    +     
Sbjct: 1354 SEATDFKIIDDHTILAPFNAVPGLGDNAAKQIVAARAEQKFLSKEDLATRGKVSQTIMEY 1413

Query: 882  LESL-VFAGALD 892
             E+  V  G  D
Sbjct: 1414 FENNGVLEGMPD 1425



 Score = 69.2 bits (168), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 41/94 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   + ++ +       Q AIAITD  ++ S  E      +  ++ + 
Sbjct: 329 VELHLHTNMSQLDATSTASDFIKTAKKFGQKAIAITDHADVQSFPEAYHTGASEKMKILY 388

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++     L + N  +  +     ++  V T
Sbjct: 389 GYEANMIDDHALLVLNPTEMDYRNREYVIFDVET 422


>gi|168216561|ref|ZP_02642186.1| DNA polymerase III, alpha subunit [Clostridium perfringens NCTC
           8239]
 gi|182381547|gb|EDT79026.1| DNA polymerase III, alpha subunit [Clostridium perfringens NCTC
           8239]
          Length = 416

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 143/416 (34%), Positives = 220/416 (52%), Gaps = 27/416 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6   FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +GC++ +  +      N           +VLLV   +GY+ L+++VS   +        R
Sbjct: 66  LGCEVYVVPKSRKIKNN---DEDNKTYHLVLLVKNEKGYENLMKIVSVASIEG-FYYKPR 121

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I   +L+E  +EG+I L+    G + +A    +   A +    ++  F D  Y+ LQ H 
Sbjct: 122 IDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAATFYRDTFNDGFYLELQNHG 180

Query: 191 GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R  
Sbjct: 181 IEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRYP 240

Query: 250 PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            D  YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F   E      E  
Sbjct: 241 SDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEG----VEPF 296

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYR----------------QRLDFELNVIARMK 352
             LR     GL  RL +    K     D                  +RL++EL VI +M 
Sbjct: 297 EYLRKTCFDGLIDRLEELKSLKEKGIYDIDKVYEIGENNDKVKEDIERLEYELGVIKQMG 356

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
           +  YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFER L
Sbjct: 357 YVDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERKL 412


>gi|166032729|ref|ZP_02235558.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC 27755]
 gi|166027086|gb|EDR45843.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC 27755]
          Length = 1521

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 168/946 (17%), Positives = 313/946 (33%), Gaps = 179/946 (18%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F Q     GI+ +                N           +++L     G   L  L
Sbjct: 634  VKFIQMLEERGIETLDQMNHFGAH-------NAEAIRKMPSYHVIVLAKNDIGRVNLYTL 686

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL---- 171
            +S+ +L +   +  R+  S + +   EGLI+ +   +G + +A     S     R+    
Sbjct: 687  ISKSHL-EYFGRQPRMPKSEVLKY-REGLIIGSACEAGELYQAILGEKSAERIARIVNFY 744

Query: 172  --LTFKKLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
              L  + L  +R  +        +     R    ++++L    + P+VAT +  F+  ED
Sbjct: 745  DYLEIQPLGNNRFMIDSDRVEKVQSEEDLREINREIIRLGERFDKPVVATCDVHFMDPED 804

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCS 282
                 ++MA        Q          YL    EM+  F  L   +A E  ++     +
Sbjct: 805  EVYRRIIMAGKGFKDADQ------QAPLYLHTTDEMLEEFEYLGSAKAKEIVIDNPNMIA 858

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
             +++  +P+ P        D  K     LR                      +   +RL+
Sbjct: 859  DMVEKISPVRPDKCPPVIPDSDKT----LREICYNKAHSMYGD------PLPEIVTERLE 908

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             ELN I    F+  ++I    +  + ++   VG  RGS   S  A    IT+++PL    
Sbjct: 909  RELNSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFVATMAGITEVNPLSPHY 967

Query: 400  ------------------------------------------FSLLFERFLNPDRMSMPD 417
                                                      F + FE FL       PD
Sbjct: 968  YCPKCHYSDFESEEVRAYAGGCGWDMPDKECPVCKTRLVKDGFDIPFETFLGFKGNKEPD 1027

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  D +    +Y +  +G  +  +  T G+L  K A   V                
Sbjct: 1028 IDLNFSGDYQSNAHKYTEIIFGAGQTFRAGTIGTLADKTAFGYVKNYF------------ 1075

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD- 536
                                 R  R     +DR++   Q   G+ R    H  GI++   
Sbjct: 1076 -------------------EERGTRKRTCEIDRIV---QGCTGIRRSTGQHPGGIIVLPH 1113

Query: 537  -RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--- 589
               ++   P+         D+  T F+   I+   L+K D LG    T+++    ++   
Sbjct: 1114 GEDINSFTPVQHPANDMTTDIITTHFDYHSIDH-NLLKLDILGHDDPTMIKALEAYISSP 1172

Query: 590  ------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
                   +       + IP DD     L      LGI   +  G      G+     + +
Sbjct: 1173 AMENEYNETDHPFVATDIPLDDQGVMSLFHDTSALGITPDDIGGCPVGCLGIPEFGTDFV 1232

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQ-- 700
            I +V   +P  + +++  +   +G +  ++    LI          I  ++ +M      
Sbjct: 1233 IQMVVDTKPQTLSDLIRISGLSHGTDVWLNNAQELIKSGKATISTAICTRDDIMTYLINK 1292

Query: 701  -LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
             L S  S +  + +R+    K K +             K  + +      +    +   Y
Sbjct: 1293 GLDSEESFTIMERVRKGTVAKGKCK--------DWPEYKKDMLEHDVPEWYIGSCEKIKY 1344

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS---------------------------- 791
             F K+HAAAY +++Y+ A+ K +YP+ +  A                             
Sbjct: 1345 MFPKAHAAAYVMMAYRIAYCKVNYPLAYYGAYFGIRADAFSYEIMCQGKEKLQYYIDDYT 1404

Query: 792  -----MTLEMDNVEKIKKFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGV 845
                 ++ +  +  K     Q+      + +P  +       F + D ++    ++I G+
Sbjct: 1405 RRSDSLSKKEQDTMKDMHIVQEMYARGYEFLPIDIYRAKATKFSIVDGKLMPPFSSIDGM 1464

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            G   A  + EA+ D P+ S +DF +R  + K     +  L   G L
Sbjct: 1465 GEKAAEAVEEAAKDGPYLSKDDFRNRTKASKTVVDYMADLGLLGDL 1510



 Score = 71.9 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
           V L  H+  S ++G   + +++ +       AIAITD   + +  + 
Sbjct: 389 VELHCHTKMSDMDGVSEVKDLVKRAHDWGHKAIAITDHGVVQAFPDA 435


>gi|225389824|ref|ZP_03759548.1| hypothetical protein CLOSTASPAR_03572 [Clostridium asparagiforme DSM
            15981]
 gi|225044134|gb|EEG54380.1| hypothetical protein CLOSTASPAR_03572 [Clostridium asparagiforme DSM
            15981]
          Length = 561

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 154/432 (35%), Positives = 232/432 (53%), Gaps = 20/432 (4%)

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            QLES GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   KN +  I    P ++P+
Sbjct: 1    QLESGGMKSFMKELKPGSLEDIIAGISLYRPGPMDFIPKYIKGKNDRSAITYDCPQMEPI 60

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK--- 738
            L  T G I+YQEQVMQI + L+GY++  +D++RRAM KK    M+K+++ F+ G  +   
Sbjct: 61   LGPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSKKKASVMEKERQNFVYGNEEEGV 120

Query: 739  -----NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
                 NG+ +  A +I++ +  FA Y FNKSHAAAYAV+SYQTA++K +YP+EF+AA M+
Sbjct: 121  KGCVNNGLEERTANHIYDEMTDFAKYAFNKSHAAAYAVVSYQTAYLKYYYPLEFMAALMS 180

Query: 794  LEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
              MDNV K  ++    RQ   I I+PP +N     F V  N I Y L+AIK VG +    
Sbjct: 181  SVMDNVTKFSEYILTCRQIMGIPILPPDINEGESGFSVSGNAIRYGLSAIKSVGKSVVDT 240

Query: 853  IME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I+    A  PF S+EDF  R+  K++N+R LE+ + +GALD    +R Q +  +  + + 
Sbjct: 241  IIADREAGGPFRSMEDFVGRMTHKEVNKRTLENFIKSGALDTLPGTRKQKIAVMPVLLES 300

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 K+      ++F        D  +IT  +            E+ +LG Y SGHPL+
Sbjct: 301  KARERKSVIEGQLSLFDIAGEEERDNFQITFPEVGEYTKEELLVFEKEILGVYISGHPLE 360

Query: 970  VYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             YK + +K       + +            G  + +  +V  K  K TR    + ++T  
Sbjct: 361  DYKDVWQKTVTANASDFIVDEEAGGARVTDGARVVIGGLVAGKTVKTTRTNQLMAFITLE 420

Query: 1022 EPAKEYEANFFP 1033
            +     E   FP
Sbjct: 421  DLMGSVEVIIFP 432


>gi|291519550|emb|CBK74771.1| DNA polymerase III catalytic subunit, PolC type [Butyrivibrio
            fibrisolvens 16/4]
          Length = 1480

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 181/990 (18%), Positives = 333/990 (33%), Gaps = 208/990 (21%)

Query: 23   LEGALSLNNILDKIAADQQPAIAITDTNNLFSALE-FSQKACAAGIQPIIGCQLDIDMQD 81
            L+    L N+++        A+A  D        E F  K  A  I  +          +
Sbjct: 575  LDAVCKLENVVN---EHHHRAVA--DAEVTAKIFEKFIVKLEAENIHTLTEL-------N 622

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            +       +         ++L     G   L  LVS  +L     +  R+  S L E   
Sbjct: 623  DKAKPKAEQIKKMKAHHCIVLAKNDLGRINLYRLVSESHLK-YFSRYPRVPKSLLSEC-R 680

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------- 193
            EGLI+ +   +G +  A   +       R+ +F        Y+ +Q     +        
Sbjct: 681  EGLIIGSACEAGELYDAIVDDRDDSEVARIASFYD------YLEIQPVGNNEFMIRSDKP 734

Query: 194  -----------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                       +    ++V L      P+VAT +  FL  +D     ++MA   +     
Sbjct: 735  KYENFNSVKDLQDVNKKIVALGEEFNKPVVATCDVHFLDPQDEIYRRIIMA---NKGFDD 791

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEA------LENTVEIARRCSFILQVHAPILPRFI 296
             D+       YL +  EM+  FS L  A      +ENT  IA  C +I  V     P  I
Sbjct: 792  ADQ---QAPLYLHSTDEMLEEFSYLGLAKAHEVVIENTNMIADMCEYIHPVRPDKCPPVI 848

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            E   +D        LR                      +    RL+ ELN I    +S  
Sbjct: 849  EHSEED--------LRRICETRAHEVYGPDL------PEIVSARLERELNSIIGNGYSVM 894

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------- 399
            ++I    +  + ++   VG  RGS   S  A    IT+++PL                  
Sbjct: 895  YIIAQKLVWKSNEDGYLVG-SRGSVGSSFAATMAGITEVNPLPPHYRCPNCFYVDFDGPE 953

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                          F + FE FL       PD D++F  + + +
Sbjct: 954  VQEIVNQGLSGVDMPDKICPKCGKPLAKDGFDIPFETFLGFKGDKEPDIDLNFSNEYQSK 1013

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
              +Y +  +G  +  +  T  +L  K A+  V +                          
Sbjct: 1014 AHKYTEVIFGEGQTFKAGTVSTLADKNAVGYVLKYY------------------------ 1049

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYR 547
                +    R+ R  +  +      ++ +EG+      H  G+V+      +    P+  
Sbjct: 1050 ----EKRDIRKRRAENERI------AKGVEGVKSTTGQHPGGVVVLPNGEDIYSFTPVQH 1099

Query: 548  DVR--SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                 +D+  T F+   I+   L+K D LG    T++++  D             IP DD
Sbjct: 1100 PANKDTDIVTTHFDYHKIDA-NLLKLDILGHLDPTMIKRLEDLTGINAT-----EIPLDD 1153

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +   L  +   LGI   +  G      G+     +  + ++   +P    ++V      
Sbjct: 1154 KDVMSLFQSTKALGITPDDIMGTPLGTLGIPEFGTDFAMQMLVEAKPQYFTDLVRIAGLA 1213

Query: 666  NGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKI 721
            +G +  + +   LI          I  ++ +M       L    S +  + +R+ +  K 
Sbjct: 1214 HGTDVWLGNAQDLILSGTATITEAICTRDDIMVYLIHKGLDPAESFTIMERVRKGVVAKG 1273

Query: 722  K-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            K +E    K+       ++G+      +  ++      Y F K+HAAAY +++++ A+ K
Sbjct: 1274 KCDEWPTYKQH----MQEHGVPDWYIGSCEKI-----KYMFPKAHAAAYVMMAWRVAYCK 1324

Query: 781  THYPVEFLAASMTLEMDNVE-------------KIK-------------------KFCQD 808
             +YP+ + AA  ++     +             +IK                   +  Q+
Sbjct: 1325 INYPLAYYAAFFSIRAGGFDYEKCCQGKARCEQEIKNLKAQSDLSATDKDVLIALRLVQE 1384

Query: 809  ARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
                    +P  +       FK+ DN+I     ++ G+G   A  +  A++   F SL+D
Sbjct: 1385 MYARGFDFLPMDLYQSDSRYFKIVDNKILPPFNSLPGMGDKAAEQLQIAASQGKFLSLDD 1444

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
               R    K+++ +++ +V  G +     S
Sbjct: 1445 IKDR---GKVSQTIIDKMVELGVIKDLPKS 1471



 Score = 64.6 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 1/94 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S  +G   + +I+ +       A+AITD   +  A   +      G   +I
Sbjct: 363 VELHCHTKMSEFDGVSEITSIISRAKDWGHKALAITDHGVV-QAFCDADHMKGLGDFKVI 421

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                  + D  +     +        +V  + T
Sbjct: 422 YGCEIYLVDDTKRPVVNDRGQSLHDEYVVFDIET 455


>gi|126654115|ref|ZP_01725933.1| DNA polymerase III PolC [Bacillus sp. B14905]
 gi|126589395|gb|EAZ83545.1| DNA polymerase III PolC [Bacillus sp. B14905]
          Length = 1443

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 164/931 (17%), Positives = 317/931 (34%), Gaps = 187/931 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++      +      N  +               +L     G + L ++VS  +      
Sbjct: 588  LKDADELVIKYHDDFNKHIGGGDAYKKGRPMHCTILAVDNAGLKNLFKIVSHAHTKT-FY 646

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLFG 179
            +  R+  + L++   EGL++ +G S+G +       S + AE+    +       K ++ 
Sbjct: 647  RVPRVTRAVLEQY-REGLLVGSGCSNGELFETMMNKSPEEAEQVAKFYDYIEVQPKAVYA 705

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +  N+ R          ++V+L    + P+VAT N  +L   D     +L+       
Sbjct: 706  PLIERNVVRDEWTLEDIIRKLVKLGKKLDKPVVATGNVHYLDPTDAMFRQILVGSQGGAN 765

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            +  + +    P+ + +   EM+  F  L    A E  V  A++ +  +    PI      
Sbjct: 766  ILNRSKL---PEVHFRTTDEMLKEFDFLGPDLAKEVVVTNAQKVADSIGDVKPIKDDLYT 822

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E+ N           +         +  + R++ EL  I    F   +
Sbjct: 823  PKIEG----SDDEVTNLTYEMAHHIYGEEL------PEIVKARIEKELKSILGHGFGVIY 872

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI A  ++ +  +   VG  RGS   S+ A  + IT+++PL                   
Sbjct: 873  LISAKLVKKSLADGYLVG-SRGSVGSSLVATFMEITEVNPLPPHYVCPNCKHSEFFDDGS 931

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + + +   Y + 
Sbjct: 932  VSSGFDLPNKDCSECGTPYKKDGQDIPFETFLGFKGDKVPDIDLNFSGEYQPKAHNYTKV 991

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V                            +  A+D 
Sbjct: 992  LFGEDYVYRAGTIGTVAEKTAYGYV----------------------------KGYANDH 1023

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRS 551
                       VDRL+   Q   G+ R +  H  GI++      +    P+        +
Sbjct: 1024 NL---HFRGAEVDRLV---QGCTGVKRTSGQHPGGIIVVPDYMDIFDFSPVQFPADAQDA 1077

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    ++K D LG    T+++   D        +D   IP DD     +
Sbjct: 1078 EWRTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPVVMQI 1131

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1132 FSSPETLGVTEKQIGCKTGTLGIPEFGTRFVRQMLEDTKPSTFSELVQISGLSHGTDVWL 1191

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
                    N +E I +   ++  ++     +++Y    +    L    +    + +R+  
Sbjct: 1192 G-------NAQELIHNGTCVLKEVIGCRDDIMVY----LIYQGLEPSLAFKIMESVRKG- 1239

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K + EE + +            +        +    K   Y F K+HAAAY +++ + A
Sbjct: 1240 -KGLSEEFEAE------------MLANKVPGWYIESCKKIKYMFPKAHAAAYVLMAVRIA 1286

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKF---------CQDARQFNIQIMPPSVN------ 822
            W K H+P+ + AA  T+  D+ + I              +     +       N      
Sbjct: 1287 WFKVHFPILYYAAYFTVRADDFDLIAMVQGSQMIRARIDEINLKGLDASTKEKNLLTVME 1346

Query: 823  -------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
                               +   +F +  N +     AI G+GT  A+ I+ A  D  F 
Sbjct: 1347 LALEMCERGMSFQKVDLYRSQASEFVIEGNTLIPPFDAIPGLGTNVAKTIVAAREDGEFL 1406

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            S ED   R    ++++ ++E +   G L+  
Sbjct: 1407 SKEDLQQR---GRVSKTLIEYMDQLGCLEGM 1434



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ + A    PA+AITD   + S  E        GI+ I 
Sbjct: 342 VELHLHTPMSQMDAVTPVDRLVAQAAKWGHPAVAITDHAVVQSFPEAYAAGKKHGIKVIY 401


>gi|169827163|ref|YP_001697321.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
 gi|168991651|gb|ACA39191.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
          Length = 1468

 Score =  423 bits (1087), Expect = e-115,   Method: Composition-based stats.
 Identities = 164/931 (17%), Positives = 317/931 (34%), Gaps = 187/931 (20%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++      +      N  +               +L     G + L ++VS  +      
Sbjct: 613  LKDADELVIKYHDDFNKHIGGGDAYKKGRPMHCTILAVDNAGLKNLFKIVSHSHTKT-FY 671

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLFG 179
            +  R+  + L++   EGL++ +G S+G +       S + AE+    +       K ++ 
Sbjct: 672  RVPRVTRAVLEQY-REGLLVGSGCSNGELFETMMNKSPEEAEQVAKFYDYIEVQPKAVYA 730

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +  N+ R          ++V+L    + P+VAT N  +L   D     +L+       
Sbjct: 731  PLIERNVVRDEWTLEDIIRKLVKLGKKLDKPVVATGNVHYLDPTDAMFRQILVGSQGGAN 790

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            +  + +    P+ + +   EM+  F  L    A E  V  A++ +  +    PI      
Sbjct: 791  ILNRSKL---PEVHFRTTDEMLKEFDFLGPDLAKEVVVTNAQKVADSIGDVKPIKDDLYT 847

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E+ N           +         +  + R++ EL  I    F   +
Sbjct: 848  PKIEG----SDDEVTNLTYEMAHHIYGEEL------PEIVKARIEKELKSILGHGFGVIY 897

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI A  ++ +  +   VG  RGS   S+ A  + IT+++PL                   
Sbjct: 898  LISAKLVKKSLADGYLVG-SRGSVGSSLVATFMEITEVNPLPPHYVCPNCKHSEFFDDGS 956

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + + +   Y + 
Sbjct: 957  VSSGFDLPNKDCSECGTPYKKDGQDIPFETFLGFKGDKVPDIDLNFSGEYQPKAHNYTKV 1016

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V                            +  A+D 
Sbjct: 1017 LFGEDYVYRAGTIGTVAEKTAYGYV----------------------------KGYANDH 1048

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRS 551
                       VDRL+   Q   G+ R +  H  GI++      +    P+        +
Sbjct: 1049 NL---HFRGAEVDRLV---QGCTGVKRTSGQHPGGIIVVPDYMDIFDFTPVQFPADAQDA 1102

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            +   T F+   I    ++K D LG    T+++   D        +D   IP DD     +
Sbjct: 1103 EWRTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDL-----SGIDPKTIPTDDPVVMQI 1156

Query: 612  L--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                              GTLGI +  +  +RQ LE  +P    +++ +  L     +  
Sbjct: 1157 FSSPESLGVTEKQIGCKTGTLGIPEFGTRFVRQMLEDTKPSTFSELVQISGLSHGTDVWL 1216

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
                    N +E I +   ++  ++     +++Y    +    L    +    + +R+  
Sbjct: 1217 G-------NAQELIHNGTCVLKEVIGCRDDIMVY----LIYQGLEPSLAFKIMESVRKG- 1264

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K + EE + +            +        +    K   Y F K+HAAAY +++ + A
Sbjct: 1265 -KGLSEEFEAE------------MLANKVPGWYIESCKKIKYMFPKAHAAAYVLMAVRIA 1311

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKF---------CQDARQFNIQIMPPSVN------ 822
            W K H+P+ + AA  T+  D+ + I              +     +       N      
Sbjct: 1312 WFKVHFPILYYAAYFTVRADDFDLIAMVQGSQMIRARIDEINLKGLDASTKEKNLLTVME 1371

Query: 823  -------------------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
                               +   +F +  N +     AI G+GT  A+ I+ A  D  F 
Sbjct: 1372 LALEMCERGMSFQKVDLYRSQASEFVIEGNTLIPPFDAIPGLGTNVAKTIVAAREDGEFL 1431

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            S ED   R    ++++ ++E +   G L+  
Sbjct: 1432 SKEDLQQR---GRVSKTLIEYMDQLGCLEGM 1459



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ + A    PA+AITD   + S  E        GI+ I 
Sbjct: 367 VELHLHTPMSQMDAVTPVDRLVAQAAKWGHPAVAITDHAVVQSFPEAYAAGKKHGIKVIY 426


>gi|227514713|ref|ZP_03944762.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
 gi|227086917|gb|EEI22229.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
          Length = 1447

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 164/932 (17%), Positives = 313/932 (33%), Gaps = 195/932 (20%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  MT+ G         + +L +T  G + L +LVS   + +   +  RI  S L     
Sbjct: 603  NKHMTDNGAYRHARPFHVTILAATQAGLKNLYKLVSLSNV-EYFARVPRIPRSVLNRY-R 660

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-------FGDRLYVNLQRHRGYDR 194
            EGL++ T  + G +  A        A++    +  +       +   L   +   + +  
Sbjct: 661  EGLLLGTACADGEVFTAMMQKGYGEAKRLAEFYDYIEVQPKPNYAPLLESGVITDQAHLE 720

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                 +V+L      P+VAT ++ +++ ED     +L+        +        PD + 
Sbjct: 721  DILKNMVKLGSALNKPVVATGDAHYINPEDAIYRKILINSQGG---ANPLNRTERPDVHF 777

Query: 255  KNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   EM+ +FS L E       ++NT  +A      ++   P+         +  ++E +
Sbjct: 778  RTTDEMLDLFSFLGEDVAKQIVVDNTHLVADMVDDGIR---PVKAGLYPPHMEGAEQEIQ 834

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            +     A       L           Q  + R++ ELN I    FS ++LI    +  + 
Sbjct: 835  DRTWTTAKEWYGDPL----------PQLVKDRVELELNSIVSNGFSVHYLIAQRLVAKST 884

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------------- 399
            K+   VG  RGS   SV A    IT+++PL                              
Sbjct: 885  KDGYLVG-SRGSVGSSVVATLSGITEVNPLPPHYRCPNCQYSHFYTKGEYSSGFDLPDKD 943

Query: 400  ------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                          + F+ FL      +PD D++F  D +     Y++  +G   V +  
Sbjct: 944  CPKCGTKMIGDGHDIPFQTFLGFKGNKVPDIDLNFSGDYQPIAHNYMKVLFGENNVYRAG 1003

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G++  K A   V                            +A   D   +     +  
Sbjct: 1004 TIGTVADKTAYGYV----------------------------KAYERDKEVQFRGAEEDR 1035

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRSD---LPVTQFNMKW 562
                  ++    G+ R    H AGI+I      +    P+             T F+   
Sbjct: 1036 ------LASGATGVKRTTGQHPAGIIIVPDDMEIYDFTPVQYPADDQSAAWETTHFDFHS 1089

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    ++K D LG    T+++   D        ++   IP DD     L +         
Sbjct: 1090 IHD-NILKMDILGHDDPTMIRALQDL-----SGINPQSIPMDDPGVMSLFSSPEALGVTE 1143

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
                   GTLG+ +  +  +R  LE   P     ++ +  L     +         KNG 
Sbjct: 1144 EQINSKTGTLGLPEFGTRFVRGMLEDTHPQNYSQLLQISGLSHGTGVWLDNAQELIKNGT 1203

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
              I ++    D ++ +     +  E            S    + +R+   K I EE    
Sbjct: 1204 ATIANVIGCRDNIMTDLIHYGLDSET-----------SFQVMEHVRKG--KGIPEEW--- 1247

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
                     +  +++      +        Y F ++HAAAY +++ + A+ K ++P+ + 
Sbjct: 1248 ---------QEKMTEVGVPQWYLDSCLKIKYMFPRAHAAAYVLMALRIAYFKVYFPLVYY 1298

Query: 789  AASMTLEMDNVEKIK---------------------------------KFCQDARQFNIQ 815
            AA  ++  D+ + +                                  +   +  +   +
Sbjct: 1299 AAFFSVRADDFDVVAMSHGKEAVKSAMQAITSKGNEATAKEKSLLTILELANEMLERGFK 1358

Query: 816  IMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      D+ +  + +     AI G+G   A+ I+ A  +KPF S +D   R   
Sbjct: 1359 FKMVDIERSDATDWLIDGDTLIAPFRAIPGLGINVAKQIVAAREEKPFLSKQDLSER--- 1415

Query: 875  KKLNRRVLESLVFAGALDCF-GYSRMQLLQSL 905
             K+++ ++E +     LD     +++ L   L
Sbjct: 1416 GKVSKTLIEFMTVNHVLDQLPDENQLSLFDML 1447



 Score = 68.5 bits (166), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ-----KACAAG 66
           + L +H++ S ++   ++   + +     QPAIAITD   L    E        K   + 
Sbjct: 336 IELHLHTTMSTMDATNTIGEYVKQAIKWGQPAIAITDHAGLQGFPEAFSSSYDGKKDESK 395

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           I+ + G + ++       + N+   P    P ++  + T
Sbjct: 396 IKMLYGVEANVVDDGVPLVYNENHLPLKGQPYVIFDIET 434


>gi|260662302|ref|ZP_05863198.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            fermentum 28-3-CHN]
 gi|260553685|gb|EEX26577.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            fermentum 28-3-CHN]
          Length = 1447

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 164/932 (17%), Positives = 313/932 (33%), Gaps = 195/932 (20%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  MT+ G         + +L +T  G + L +LVS   + +   +  RI  S L     
Sbjct: 603  NKHMTDNGAYRHARPFHVTILAATQAGLKNLYKLVSLSNV-EYFARVPRIPRSVLNRY-R 660

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-------FGDRLYVNLQRHRGYDR 194
            EGL++ T  + G +  A        A++    +  +       +   L   +   + +  
Sbjct: 661  EGLLLGTACADGEVFTAMMQKGYGEAKRLAEFYDYIEVQPKPNYAPLLESGVITDQAHLE 720

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                 +V+L      P+VAT ++ +++ ED     +L+        +        PD + 
Sbjct: 721  DILKNMVKLGSALNKPVVATGDAHYINPEDAIYRKILINSQGG---ANPLNRTERPDVHF 777

Query: 255  KNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   EM+ +FS L E       ++NT  +A      ++   P+         +  ++E +
Sbjct: 778  RTTDEMLDLFSFLGEDVAKQIVVDNTHLVADMVDDGIR---PVKAGLYPPHMEGAEQEIQ 834

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            +     A       L           Q  + R++ ELN I    FS ++LI    +  + 
Sbjct: 835  DRTWTTAKEWYGDPL----------PQLVKDRVELELNSIVSNGFSVHYLIAQRLVAKST 884

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------------- 399
            K+   VG  RGS   SV A    IT+++PL                              
Sbjct: 885  KDGYLVG-SRGSVGSSVVATLSGITEVNPLPPHYRCPNCQYSHFYTKGEYSSGFDLPDKD 943

Query: 400  ------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                          + F+ FL      +PD D++F  D +     Y++  +G   V +  
Sbjct: 944  CPKCGTKMIGDGHDIPFQTFLGFKGNKVPDIDLNFSGDYQPIAHNYMKVLFGENNVYRAG 1003

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G++  K A   V                            +A   D   +     +  
Sbjct: 1004 TIGTVADKTAYGYV----------------------------KAYERDKEVQFRGAEEDR 1035

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRSD---LPVTQFNMKW 562
                  ++    G+ R    H AGI+I      +    P+             T F+   
Sbjct: 1036 ------LASGATGVKRTTGQHPAGIIIVPDDMEIYDFTPVQYPADDQSAAWETTHFDFHS 1089

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    ++K D LG    T+++   D        ++   IP DD     L +         
Sbjct: 1090 IHD-NILKMDILGHDDPTMIRALQDL-----SGINPQSIPMDDPGVMSLFSSPEALGVTE 1143

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
                   GTLG+ +  +  +R  LE   P     ++ +  L     +         KNG 
Sbjct: 1144 EQINSKTGTLGLPEFGTRFVRGMLEDTHPQNYSQLLQISGLSHGTGVWLDNAQELIKNGT 1203

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
              I ++    D ++ +     +  E            S    + +R+   K I EE    
Sbjct: 1204 ATIANVIGCRDNIMTDLIHYGLDSET-----------SFQVMEHVRKG--KGIPEEW--- 1247

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
                     +  +++      +        Y F ++HAAAY +++ + A+ K ++P+ + 
Sbjct: 1248 ---------QEKMTEVGVPQWYLDSCLKIKYMFPRAHAAAYVLMALRIAYFKVYFPLVYY 1298

Query: 789  AASMTLEMDNVEKIK---------------------------------KFCQDARQFNIQ 815
            AA  ++  D+ + +                                  +   +  +   +
Sbjct: 1299 AAFFSVRADDFDVVAMSHGKEAVKSAMQAITSKGNEATAKEKSLLTILELANEMLERGFK 1358

Query: 816  IMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      D+ +  + +     AI G+G   A+ I+ A  +KPF S +D   R   
Sbjct: 1359 FKMVDIERSDATDWLIDGDTLIAPFRAIPGLGINVAKQIVAAREEKPFLSKQDLSER--- 1415

Query: 875  KKLNRRVLESLVFAGALDCF-GYSRMQLLQSL 905
             K+++ ++E +     LD     +++ L   L
Sbjct: 1416 GKVSKTLIEFMTVNHVLDQLPDENQLSLFDML 1447



 Score = 68.5 bits (166), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ-----KACAAG 66
           + L +H++ S ++   ++   + +     QPAIAITD   L    E        K   + 
Sbjct: 336 IELHLHTTMSTMDATNTIGEYVKQAIKWGQPAIAITDHAGLQGFPEAFSSSYDGKKDESK 395

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           I+ + G + ++       + N+   P    P ++  + T
Sbjct: 396 IKMLYGVEANVVDDGVPLVYNENHLPLKGQPYVIFDIET 434


>gi|227892603|ref|ZP_04010408.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
 gi|227865588|gb|EEJ73009.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
          Length = 1435

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 162/879 (18%), Positives = 299/879 (34%), Gaps = 132/879 (15%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L    +G + L +LVS     D   +  R   S L  +  EGL+  +G   
Sbjct: 605  RARPSHMTVLAKDQKGLKNLYKLVSIASTKD-FYRIPRTPKSDLARLH-EGLLYGSGCWQ 662

Query: 153  GPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGY-DRYRESQVV----QLAY 205
            G +  A        A ++   +   ++   + Y  L       D  +  +++    +L  
Sbjct: 663  GDVFVAMMQKGYDEAREKAKFYDFLEVQPPKNYSQLIEDGLIKDEEQLEEIISNIYKLGK 722

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
              + P+VAT ++ ++   D     +L++       S  +R +  PD +  +  EM++ FS
Sbjct: 723  ELKKPVVATGDAHYVEPHDAIYRTILISAQ----RSNPNRNKPQPDLHFYSTQEMLNAFS 778

Query: 266  DLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
             L E  A E  ++ + + +  +    PI                + EL+           
Sbjct: 779  FLGEDVAKEIVIDNSNKIADEISEIQPIKDGLYPPHI----AHADEELKKLTYDKAYELY 834

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                       +  + R+D ELN I    ++  +LI    +  + K+   VG  RGS   
Sbjct: 835  GN------PLPKIVKDRIDLELNSIISNVYAVIYLISQRLVAKSNKDGYLVG-SRGSVGS 887

Query: 384  SVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFCQ-----DRRDE 429
            S+ A    IT+++PL         ++S  FE         +PD +   C      D +D 
Sbjct: 888  SLVATMSGITEVNPLAPHYRCPKCKYSQFFENGEYGSGFDLPDKNCPKCGTPLVKDGQDI 947

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
                    +G ++V  I    S   +    +  R +        R    I          
Sbjct: 948  PFATFLGFHG-DKVPDIDLNFSGDYQPVAHNFIRVM-FGPDNSYR-AGTIATVADKT--- 1001

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPM-- 545
             A      F E R        L  ++  + G+ R    H AGIV+      +    P+  
Sbjct: 1002 -AYGYAKHFDEERDLKLRNAELDRLASGIRGVKRTTGQHPAGIVVVPDDMDIYDFTPVSY 1060

Query: 546  -YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
               DV +   +T ++   I    ++KFD LG    T+++   D        +D   IP D
Sbjct: 1061 PADDVNAAWLITHYDFHSIHD-NILKFDILGHDDPTMIRHLQDL-----SGIDPLTIPPD 1114

Query: 605  DHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            D     L ++               GTLG+ +  +  +R  LE  +P    +++ +  L 
Sbjct: 1115 DPGVMSLFSSTKALGVTPEQIGSQTGTLGVPEFGTRFVRGMLEETKPTTFSELLQISGLS 1174

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
                +      +    G  K+  +    D ++ +     +  E           +S  E+
Sbjct: 1175 HGTDVWLGNAEDLVNQGTCKLKDVIGCRDNIMMDLIHWGVKPEIA---------FSTMES 1225

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
                R +  +    +               I      +  ++      Y F K+HA AY 
Sbjct: 1226 VRHGRGISDENMAVL----------KKNKNIPDWYIPSCLKI-----KYMFPKAHATAYI 1270

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK--------------------------- 803
            +++ + AW K +YP  +  A  ++  D  + +                            
Sbjct: 1271 LMALRIAWFKVYYPEIYYTAYFSVRADLFDLVAMSHGKNTVKAAMKEIQDKGMDASAKDK 1330

Query: 804  ------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGTTTARHIME 855
                  +   +  +  I+I    ++     DFK+ D         A+ G+G   A+ I+ 
Sbjct: 1331 SLLTVLEIANECLERGIKIKMVDIDKSEATDFKILDKHTILAPFNAVPGLGDNAAKQIVA 1390

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLE-SLVFAGALDC 893
            A A+K F S ED   R    +      E + V  G  D 
Sbjct: 1391 ARAEKKFLSKEDLSKRGKVSQTIMNYFEDNGVLDGMPDE 1429



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 41/94 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   + ++ +       Q AIAITD  ++ S  E      A G++ + 
Sbjct: 332 VELHLHTNMSQLDATNAPSDFIKTAKKFGQKAIAITDHGDVQSFPEAYSTGKATGMKILY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++     L + N     +     ++  V T
Sbjct: 392 GLEANMIDDHALLVLNPAPMTYEDREFVIFDVET 425


>gi|199597102|ref|ZP_03210534.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus
            rhamnosus HN001]
 gi|199591906|gb|EDY99980.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus
            rhamnosus HN001]
          Length = 1444

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 176/933 (18%), Positives = 316/933 (33%), Gaps = 195/933 (20%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++              ++   T  G + L +LVS   +     +  R+  S LQ++  
Sbjct: 597  NDRVGAGEAYKAARPSHAIVFAKTQAGLKNLFKLVSLSNVK-YFYRVPRVPRSQLQKL-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDR 194
            EGL++ +  SSG +  A        A  +   +         ++   L  +L +   + +
Sbjct: 655  EGLLVGSACSSGEVFTAMMQKGEAEARAKAAFYDYLEIQPPAVYQPLLEADLIKGESHLK 714

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                ++V++    E P+V T +  +L + D     +L+        +        PD + 
Sbjct: 715  DILQKIVKIGDELEKPVVVTGDVHYLDQHDAIYRKILIHSQGG---ANPLNHHSLPDVHF 771

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
            ++  EM+  FS L E     + +                  I    DD     +++L   
Sbjct: 772  RSTREMLDDFSWLGEEKAQQLVVTNS-------------NLIADWIDDNITPVKDKLYTP 818

Query: 315  AVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             V G+E +L    +A  Y        +   QRLD EL  I    FS  + I    +  + 
Sbjct: 819  EVPGVEEKLKHDVMATAYELYGNPLPEIVAQRLDKELKSIIGNGFSVIYNIAQRLVLKSN 878

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------------- 399
            K+   VG  RGS   S+ A    IT+++PL                              
Sbjct: 879  KDGYLVG-SRGSVGSSLAATMAEITEVNPLPPHYRCPKCQYSEFFTHGEVGSGFDLPDKT 937

Query: 400  ------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                          + FE FL      +PD D++F  D +     Y++  +G +   +  
Sbjct: 938  CPKCGTELHKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQPVAHNYIKVMFGEDHSFRAG 997

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G++  K A   V +A +    Q                         + R A      
Sbjct: 998  TIGTVADKTAYGYV-KAYERDTGQ-------------------------QLRGA-----E 1026

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRSD---LPVTQFNMKW 562
            +DRL   +Q   G+ R    H AGI+I   D  +    P+             T F+   
Sbjct: 1027 IDRL---AQGDTGVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTTHFDFHS 1083

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK------- 615
            I    ++K D LG    T+++   D        V+   IP DD     L +         
Sbjct: 1084 IHD-NILKMDVLGHDDPTMIRMLQDL-----SGVEPKSIPTDDPGVMALFSGTESLGVTP 1137

Query: 616  -------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
                   GTLGI +  +  +R  LE  +P    +++ +  L     +             
Sbjct: 1138 EQINSKMGTLGIPEFGTRFVRGMLEETKPTTFSELLQISGLSHGTDVWLG---------- 1187

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
                +   LI   +   + VI  ++ +M +  +  G   S A  +   + K      D Q
Sbjct: 1188 ----NAEELIKQGIVTLKEVIGCRDNIM-MDLIHWGMDDSMAFNIMEHVRKGRGIPDDWQ 1242

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K                  + +        Y F K+HA AY +++ + AW K HYP+ + 
Sbjct: 1243 KAMR---------ENENVPDWYIDSCLKIKYMFPKAHATAYILMALRIAWFKVHYPLVYY 1293

Query: 789  AASMTLEMDNVE---------------------------------KIKKFCQDARQFNIQ 815
             A  ++  ++ +                                  + +   +  +   +
Sbjct: 1294 TAYFSVRAEDFDLAAMSHGKEAVKAAMKEITDKGMDASAKEKQLLTVLEIANECLERGFK 1353

Query: 816  IMPPSVNTPC-VDFKVGDNRIYY-SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
            I    V      DF + D+        A+ G+G   A+ I+ A  +KPF S ED  +R  
Sbjct: 1354 IKMIDVTKSDSHDFLIQDDHTILAPFRAVPGLGDNVAKQIVAAREEKPFLSKEDLANR-- 1411

Query: 874  SKKLNRRVLESLVFAGALDCF-GYSRMQLLQSL 905
              K+++ +++ +     LD     +++ L   L
Sbjct: 1412 -GKVSKTLIDYMTTNHVLDDLPDENQLSLFDGL 1443



 Score = 76.2 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   S+ + +++  A    AIA+TD   L +  E    A  AG++ + 
Sbjct: 334 VELHLHTNMSQMDATNSITDFVNRAKAWGHKAIAVTDHAGLQAYPEAHTAAAKAGLKMLY 393

Query: 72  GC 73
           G 
Sbjct: 394 GV 395


>gi|258508612|ref|YP_003171363.1| DNA polymerase III PolC [Lactobacillus rhamnosus GG]
 gi|257148539|emb|CAR87512.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
 gi|259649919|dbj|BAI42081.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
          Length = 1444

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 176/933 (18%), Positives = 316/933 (33%), Gaps = 195/933 (20%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++              ++   T  G + L +LVS   +     +  R+  S LQ++  
Sbjct: 597  NDRVGAGEAYKAARPSHAIVFAKTQAGLKNLFKLVSLSNVK-YFYRVPRVPRSQLQKL-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDR 194
            EGL++ +  SSG +  A        A  +   +         ++   L  +L +   + +
Sbjct: 655  EGLLVGSACSSGEVFTAMMQKGEAEARAKAAFYDYLEIQPPAVYQPLLEADLIKGESHLK 714

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                ++V++    E P+V T +  +L + D     +L+        +        PD + 
Sbjct: 715  DILQKIVKIGDELEKPVVVTGDVHYLDQHDAIYRKILIHSQGG---ANPLNRHSLPDVHF 771

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
            ++  EM+  FS L E     + +                  I    DD     +++L   
Sbjct: 772  RSTREMLDDFSWLGEEKAQQLVVTNS-------------NLIADWIDDNITPVKDKLYTP 818

Query: 315  AVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             V G+E +L    +A  Y        +   QRLD EL  I    FS  + I    +  + 
Sbjct: 819  EVPGVEEKLKHDVMATAYELYGNPLPEIVAQRLDKELKSIIGNGFSVIYNIAQRLVLKSN 878

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------------- 399
            K+   VG  RGS   S+ A    IT+++PL                              
Sbjct: 879  KDGYLVG-SRGSVGSSLAATMAEITEVNPLPPHYRCPKCQYSEFFTHGEVGSGFDLPDKT 937

Query: 400  ------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                          + FE FL      +PD D++F  D +     Y++  +G +   +  
Sbjct: 938  CPKCGTELHKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQPVAHNYIKVMFGEDHSFRAG 997

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G++  K A   V +A +    Q                         + R A      
Sbjct: 998  TIGTVADKTAYGYV-KAYERDTGQ-------------------------QLRGA-----E 1026

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRSD---LPVTQFNMKW 562
            +DRL   +Q   G+ R    H AGI+I   D  +    P+             T F+   
Sbjct: 1027 IDRL---AQGDTGVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTTHFDFHS 1083

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK------- 615
            I    ++K D LG    T+++   D        V+   IP DD     L +         
Sbjct: 1084 IHD-NILKMDVLGHDDPTMIRMLQDL-----SGVEPKSIPTDDPGVMALFSGTESLGVTP 1137

Query: 616  -------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
                   GTLGI +  +  +R  LE  +P    +++ +  L     +             
Sbjct: 1138 EQINSKMGTLGIPEFGTRFVRGMLEETKPTTFSELLQISGLSHGTDVWLG---------- 1187

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
                +   LI   +   + VI  ++ +M +  +  G   S A  +   + K      D Q
Sbjct: 1188 ----NAEELIKQGIVTLKEVIGCRDNIM-MDLIHWGMDDSMAFNIMEHVRKGRGIPDDWQ 1242

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K                  + +        Y F K+HA AY +++ + AW K HYP+ + 
Sbjct: 1243 KAMR---------ENENVPDWYIDSCLKIKYMFPKAHATAYILMALRIAWFKVHYPLVYY 1293

Query: 789  AASMTLEMDNVE---------------------------------KIKKFCQDARQFNIQ 815
             A  ++  ++ +                                  + +   +  +   +
Sbjct: 1294 TAYFSVRAEDFDLAAMSHGKEAVKAAMKEITDKGMDASAKEKQLLTVLEIANECLERGFK 1353

Query: 816  IMPPSVNTPC-VDFKVGDNRIYY-SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
            I    V      DF + D+        A+ G+G   A+ I+ A  +KPF S ED  +R  
Sbjct: 1354 IKMIDVTKSDSHDFLIQDDHTILAPFRAVPGLGDNVAKQIVAAREEKPFLSKEDLANR-- 1411

Query: 874  SKKLNRRVLESLVFAGALDCF-GYSRMQLLQSL 905
              K+++ +++ +     LD     +++ L   L
Sbjct: 1412 -GKVSKTLIDYMTTNHVLDDLPDENQLSLFDGL 1443



 Score = 76.2 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   S+ + +++  A    AIA+TD   L +  E    A  AG++ + 
Sbjct: 334 VELHLHTNMSQMDATNSITDFVNRAKAWGHKAIAVTDHAGLQAYPEAHTAAAKAGLKMLY 393

Query: 72  GC 73
           G 
Sbjct: 394 GV 395


>gi|259046785|ref|ZP_05737186.1| Gram-positive family DNA polymerase III, alpha chain [Granulicatella
            adiacens ATCC 49175]
 gi|259036553|gb|EEW37808.1| Gram-positive family DNA polymerase III, alpha chain [Granulicatella
            adiacens ATCC 49175]
          Length = 1444

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 164/919 (17%), Positives = 318/919 (34%), Gaps = 197/919 (21%)

Query: 94   PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG 153
                   +      G + L ++VS+  +     +  RI  S L       L + +G S G
Sbjct: 615  GRPFHATIFAKDQAGLKELFKVVSQSNI-QYYYRVPRILRSMLSSRRDSFL-LGSGCSEG 672

Query: 154  PIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYT 206
             +  A        A+++   +   ++    +Y       L R+  +       +V+L   
Sbjct: 673  EVFEAMMQKGYNEAKEKAKFYDYIEIMPKAIYRPLIKKELIRNEHHLEEIIQNLVRLGDE 732

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
               P+VAT N  +L+ ED    ++L+   ++        P+  PD +L+   EM+  F+ 
Sbjct: 733  LGKPVVATGNVHYLNPEDKIYREILLTSVNN------GVPQEYPDAHLRTTDEMLKEFAF 786

Query: 267  LPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
            L E  A E  V  +   S  L+   P+       + +  + E      +KA         
Sbjct: 787  LGEEKAYEVVVTNSNWVSEQLEEITPVKDDLYTPKIEGAEDEITKLSYDKAHEWY----- 841

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                      +    R+  EL  I    FS  +LI    +  + ++   VG  RGS   S
Sbjct: 842  -----GNPLPKIVDDRIKKELKSIIGNGFSVIYLIAQKLVLKSNQDGYLVG-SRGSVGSS 895

Query: 385  VTAYALTITDIDPL-----------------------------------------RFSLL 403
            + A    IT+++PL                                            + 
Sbjct: 896  LVATLTGITEVNPLAPHYRCPQCQLSEFFDDGSVGSGFDLPEKNCPRCNTRMVKDGHDIP 955

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL      +PD D++F  + + +   Y +  +G + V +  T  ++  K A   V +
Sbjct: 956  FETFLGFYGDKVPDIDLNFSGEYQPQAHNYTKVLFGEDYVYRAGTISTVADKTAFGYV-K 1014

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +                               FR+A         +  ++    G+ R
Sbjct: 1015 GYERDLGL-------------------------EFRQA--------EIERLANGCTGVKR 1041

Query: 524  HASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                H  GI++      +    P+         +   T F+   I    ++K D LG   
Sbjct: 1042 STGQHPGGIIVIPDYMDVYDFTPIQYPADDLSAEWRTTHFDFHSIHD-NVLKLDILGHDD 1100

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGIFQLE 624
             T+++   D        +D   IP DD E   +               +  GTLGI +  
Sbjct: 1101 PTVIRMLQDL-----SGMDPKSIPPDDPEVMKIFGGTEVLGVTPEQIDSNTGTLGIPEFG 1155

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +  +R  LE  +P+   +++ +  L          VY       E+++ +H +       
Sbjct: 1156 TKFVRGMLEQTKPNTFTELLQISGLSHGT-----DVYLG---NAEELIRLHNI------P 1201

Query: 685  TQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
               VI  ++ +M       +  G +    + +R+  G           + F +   +N +
Sbjct: 1202 LSEVIGCRDDIMVYLIHKGVEEGVAFKIMEGVRKGKG---------IPDDFQAIMRENNV 1252

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +    +  ++      Y F K+HAAAY +++ + AW K H P+ +  A  ++   + + 
Sbjct: 1253 PEWYIQSCLKI-----KYMFPKAHAAAYVLMALRVAWFKVHKPLLYYCAYFSVRAQDFDI 1307

Query: 801  --------KIKKFCQDARQFNIQIMPPSVN-------------------------TPCVD 827
                     IKK  ++ R+  ++      N                         +   +
Sbjct: 1308 VAMSQGKEMIKKRIKEIREKGMEASAKEQNLLTVLELANEMVERGFHFKMVDVDKSEASN 1367

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            F +  + +     AI+G+G   A  I+EA  ++PF S +D  +R    K+++ +++ +  
Sbjct: 1368 FVIEGDSLIAPFRAIQGLGLNVANKIVEARQEQPFLSKKDLATR---GKVSKTLIDYMTE 1424

Query: 888  AGALDCF-GYSRMQLLQSL 905
               LD     +++ L   L
Sbjct: 1425 NKVLDHLPDENQLSLFDDL 1443



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S+++   S ++++ + A     AIAITD  NL +  E        GI+ + 
Sbjct: 341 VELHMHTNMSVMDATNSPSDLISQAAKWGHKAIAITDHANLQAYPEAHGAGKKNGIKILY 400


>gi|299144044|ref|ZP_07037124.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus
            sp. oral taxon 386 str. F0131]
 gi|298518529|gb|EFI42268.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus
            sp. oral taxon 386 str. F0131]
          Length = 1421

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 180/993 (18%), Positives = 340/993 (34%), Gaps = 214/993 (21%)

Query: 19   SYSLLEGALSLNNILDKIAADQQPAI----AITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            ++++L+       I+  I      A+     +    +L +A      A A     I    
Sbjct: 511  NFTVLDTLSLARAIIKDIKRFNLTALSKKLGV----SLVNAHRAVNDAEATAEVFIKMLD 566

Query: 75   L-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +          D  K+     +      SI LLV    G + L +LVS  ++ +   +  
Sbjct: 567  ILKKLGIKTFCDINKLKKDIDSSILFESSISLLVKNNVGLKNLYKLVSESHM-NYVNRVA 625

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL------Y 183
            ++  S + +   EG+++ +G SS  + +A F   S+   + +  +      +       Y
Sbjct: 626  KVPRSLINKY-REGILVGSGNSSSELFKAVFNMESEENIRNIARYYDYIEIQPLENNLNY 684

Query: 184  VNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            +     + YD  ++   ++  L     +P+VAT +  +L E+D     V++         
Sbjct: 685  IENNLVKDYDTLKFINKKLYDLGKELNIPVVATGDVYYLDEKDDITRRVILNGQTGRP-- 742

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRF 295
              +   +    + +   EM+  FS L +       ++NT  IA  C  I  +     P  
Sbjct: 743  -PENAHIPQKLFFRTTDEMLEEFSYLGKDQSYEVVVKNTNMIANLCEDIKPIPDGTYPPI 801

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            IE          +++LR                      +    RLD ELN I    ++ 
Sbjct: 802  IEG--------ADSDLRKICYEKAHEIYGDNL------PEIVENRLDRELNSIISNGYAV 847

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------- 399
             ++I    ++ +  +   VG  RGS   S  A   +IT+++PL                 
Sbjct: 848  LYIIAQKLVKKSNDDGYLVG-SRGSVGSSFAATMSSITEVNPLPPHYICPNCKYFEDMSN 906

Query: 400  -------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                       + FE FL  +    PD D++F  + +    +Y 
Sbjct: 907  GTVDSGIDLPDKICPVCGSELKKDGHDIPFEVFLGFNGDKEPDIDLNFAGEYQPTAHKYT 966

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQ---MPYSQVDRLCKLIPNDPAHPVSLQA 491
            +  +G   V +  T G++  K A   V +  +   +   ++DR+ K             A
Sbjct: 967  EELFGEGYVFRAGTIGTVAEKTAYGYVKKFYEDKNISNVEIDRIAKA------------A 1014

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY--- 546
            I                           G+ R +  H  G++I  +   +    P+    
Sbjct: 1015 I---------------------------GVKRTSGQHPGGVMICPKSKEIFDFTPIQYPA 1047

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  S +  T F+  +I    ++K D LG    T+++   DF            IP DD 
Sbjct: 1048 DDKSSGVITTHFDYNFIH-GKILKLDILGHDGPTIIKMLEDFTGLNS-----QKIPLDDE 1101

Query: 607  ETYHLLT--------------TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            +T  L +              + GTLGI +  ++ ++Q L    P    +++ +  L   
Sbjct: 1102 KTISLFSCSDELKLNENIFSSSTGTLGIPEFGTNFVKQMLIETHPKNFAELVRISGLSHG 1161

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                N+   N +            L+     +   VI  +E +M         +    D 
Sbjct: 1162 T---NVWTNNAQ-----------ELVKAGKAKLSDVICTREDIMLYLIRAGAENKMAFDT 1207

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            + +   +K K   D+QK+   +    N          +    +  +Y F K+HA AY ++
Sbjct: 1208 MEK--VRKGKGLSDEQKKIMNTLPLPN---------WYIDSCEKIEYMFPKAHAVAYVML 1256

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNV-----------------------EKIK------ 803
            S++ A+ K +YP+ + A   T+++ +                        +K+       
Sbjct: 1257 SFRIAYYKLNYPLAYYATYFTIKLADFNGELIMKGVNAIKERINDLNNSNDKLSAKEKGE 1316

Query: 804  ----KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                +   +      +  P  +       F + DN++   L A  GVG T A +I+    
Sbjct: 1317 LTVLEVVLEMFARGFEFAPVDIYKSNASKFDIYDNKVLMPLRAFFGVGETVADNIVSERE 1376

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               F S+ED   R  + K    +L S       
Sbjct: 1377 KGEFISIEDIIKRTKATKSVIDILNSNNLLKEF 1409



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L++HS  S + G  S N    + +     +IAITD +++    E  +     G++ I 
Sbjct: 321 VELKLHSKMSAMNGVSSFNEFAKRASDWGMSSIAITDISDVQGFPEAMECGKKYGLKVIY 380

Query: 72  GCQLDI 77
           G   + 
Sbjct: 381 GLDCNF 386


>gi|289424040|ref|ZP_06425828.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Peptostreptococcus anaerobius 653-L]
 gi|289155559|gb|EFD04236.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Peptostreptococcus anaerobius 653-L]
          Length = 1440

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/947 (17%), Positives = 321/947 (33%), Gaps = 179/947 (18%)

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLD-----IDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
             L         A A     I   ++        + D  ++  +            +    
Sbjct: 563  VLAGHHRAVNDAQATAEVFIKYLEIFKKKGINKLSDVNRVYGKVDYEKLRPSHATIYAQN 622

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
              G + L +L++  ++ +    + RI  S L E   EGLI+ +  SSG +  A   + S+
Sbjct: 623  QTGLKHLYQLITDSHI-EHLYGNPRILKSLLLE-KREGLIVGSACSSGELYNAVVRHKSE 680

Query: 166  VAEKRLLTFKKLFG-----DRLYV-NLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNS 217
               +++L            + +Y+      +  +  +E   ++V+L   ++ P+VAT + 
Sbjct: 681  KEIEKILELYDFIEIMPLENNMYLVESGELKSVEELKEINKKLVKLGEQYDKPVVATGDV 740

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTV 275
              L  +D     ++             R   +   Y +   EM+  FS L +  A E  V
Sbjct: 741  HMLDAKDAIYRTIIKYSQGY------GRKSKSERLYFRTTDEMLEEFSYLGKDKAYEVVV 794

Query: 276  EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
              +   + I +   PI         +      + ELR+           +          
Sbjct: 795  TNSNLIADIFEDIKPIPDETYPPRIEG----SDKELRSMCYEKARRIYGE------PLPD 844

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
               +RL+ ELN I    ++  ++I    +  +  +   VG  RGS   S  A    IT++
Sbjct: 845  IVVKRLERELNSIIGNGYAVMYIIANKLVAKSLSDGYLVG-SRGSVGSSFAATMSDITEV 903

Query: 396  DPLR-------------------------------------------FSLLFERFLNPDR 412
            +PL                                              + FE FL  + 
Sbjct: 904  NPLPAHYVCPNPDCKHSEFFAIGEWGSGVDLPPKKCPDCGTQMIKDGHDIPFEVFLGFEG 963

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
               PD D++F    +  + +Y +  +G     +  T G+++ K A   V +         
Sbjct: 964  DKEPDIDLNFSGTYQPTIHKYTEELFGEGYTFRAGTIGTVKDKTAYGYVKKYS------- 1016

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
                                       E +  D +   +  +S+   G+ R +  H  G+
Sbjct: 1017 ---------------------------EEQFLDMTAAEMDWLSKGCTGVKRTSGQHPGGV 1049

Query: 533  VIGDR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            ++      +    P+          +  T F+   I    ++K D LG    T+++   D
Sbjct: 1050 MVVPDYKDIHDFTPVQYPANDKECGVKTTHFDYHSI-SGRILKLDILGHDGPTIIRMLED 1108

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
                +     ++ IP DD ET  L T+   LG+ + +  G       +     +    ++
Sbjct: 1109 MTGIK-----ITDIPLDDPETMSLFTSTKALGVTEEDI-GTPVGSLAIPEFGTKFTRQML 1162

Query: 648  SLYRPGPIDNIVVYNNRKNGKE-KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLS 703
               +P     +V  +   +G +  + +   L+   +   + VI  ++ +M       L  
Sbjct: 1163 IDTKPTTFAALVRISGLSHGTDVWVNNAQDLVRANVIGIKDVISTRDDIMNYLIFKGLRP 1222

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
              + +  + +R+  G K           FI     N +      +  ++      Y F K
Sbjct: 1223 KLAFTIMENVRKGRGLK---------PEFIEEMKANNVPDWYIGSCQKI-----KYMFPK 1268

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIKKF----- 805
            +HA AY + S++ A+ K +YP  F A   T ++++ +             K+++      
Sbjct: 1269 AHAVAYVMTSFRIAYCKVNYPEAFYATYFTTKVEDFDVDLVTRGLDAVRAKMERIRELGN 1328

Query: 806  ---------------CQDARQFNIQIMPPSVNTP-CVDFKV-GDNRIYYSLAAIKGVGTT 848
                             +     I++    +      DF++ GD +I   + A++G+G  
Sbjct: 1329 SSTAKENNQYTILEVVVEMLCRGIEMEKVDIYRSHPTDFQLDGDKKILPPMVALQGMGEN 1388

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             A  I        F S ED   R    K+++ V+E L   G+LD   
Sbjct: 1389 AALSIAREREKGAFLSKEDLIKRT---KVSKTVVEKLSEHGSLDGMS 1432



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++G + +  ++ + A+    AIAITD   + +  +        GI+ I 
Sbjct: 341 VELHAHTQMSSMDGMVPVGELVSRAASWGHKAIAITDHGVVQAFPDAMNAGKKNGIKIIY 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTV 96
           G +  +   D   + N         
Sbjct: 401 GVEAYLVDDDTDTIVNANDRDLDQT 425


>gi|228904737|ref|ZP_04068791.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
 gi|228854751|gb|EEM99355.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
          Length = 620

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 164/587 (27%), Positives = 272/587 (46%), Gaps = 79/587 (13%)

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                  +E +       RL E++ ++E + R    HA G++I   P++  V + R  +  
Sbjct: 5    EALEEIKEVKAYAKRYPRLFELALEVESMPRTQGIHACGMLITAEPITNEVALVRG-KGG 63

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHL 611
              +  ++   +E  G IKFDFLGLK L++++     +  R    +D+  +  +D +T+ +
Sbjct: 64   ESIAGYDGPTLEAKGYIKFDFLGLKNLSVVELCRRMVEDRYGYLIDVDNLIPEDQKTFDM 123

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            +    T G+FQ+ES GM++   G+     E +IA VSLYRPGP+D I  Y    NG E++
Sbjct: 124  IQRGETDGVFQIESDGMKKMFMGLNKVDFETLIAGVSLYRPGPMDYIPKYTALANGHEEV 183

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              +HP  D + + T  ++IYQEQVMQ++  ++GYS  EADVLR+A+GKK  E ++   E 
Sbjct: 184  PQVHPAFDEITRNTFSIMIYQEQVMQVSTEMAGYSKGEADVLRKAVGKKKIEILEPALEE 243

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
              +  ++N +   +A  I + +  FA Y FN+SHAA YA I+YQTA++K +YP+E++ A 
Sbjct: 244  LHNRLTQNNVPTQVATKICDDIRPFAGYAFNRSHAACYAYIAYQTAYLKANYPLEYMTAL 303

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTA 850
            + +     +K+ K  +  R   I+++PP +N   + F + G+N I + L AIKG+G  T 
Sbjct: 304  LQVFYTEEDKVVKLVKVIRDMGIEVLPPDINRSEIGFTIEGENAIRFGLGAIKGLGEATL 363

Query: 851  RHIMEASA----------------------------------------DKPFDSLEDFCS 870
              I+E                                             PF S +D   
Sbjct: 364  EAIIEERKPRMAPAVRDEDGLETVISKEEADEIAATPDLGIVVGSVAVGGPFTSAQDVIK 423

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGY----SRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            R+  K  N++ + SL ++GA D        +R + L  + +I+                 
Sbjct: 424  RIPKKNFNKKAITSLCYSGAFDALAEGLCNNRFEYLAHMFDIR----------------- 466

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
                 G   D   +E+ +     ++FE E+ VLG Y SGH LD             +E  
Sbjct: 467  -----GEAPDSELIEQITKYTDRIKFEKEREVLGLYISGHVLDRLAE------PTDWEGL 515

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    + L       +  +T+KG  + ++       E     FP
Sbjct: 516  DDATHTTMVAL----TEARVIRTKKGDNMAFLRVDTLEGERSLTLFP 558


>gi|37784570|gb|AAP47636.1| DnaE precursor [Aphanizomenon ovalisporum]
          Length = 503

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 181/419 (43%), Positives = 258/419 (61%), Gaps = 30/419 (7%)

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
           GS+ AYA+ IT+IDP+   LLFERFLNP+R SMPD D DFC ++RD+VI YV  KYG +R
Sbjct: 1   GSLVAYAMGITNIDPVHHGLLFERFLNPERKSMPDIDTDFCIEKRDKVIEYVTQKYGKDR 60

Query: 443 VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD----SRF 498
           VAQIITF  L +KA L+DV R L +PY + D++ KLIP     P  L+ +  D      F
Sbjct: 61  VAQIITFNRLTSKAVLKDVARVLNIPYGEADKMAKLIPVVRGKPTKLKVMISDETPAPEF 120

Query: 499 REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
           +E    D  V   ++++ ++EG  +    HAAG+VI   PL ++VP+ R+      +TQ+
Sbjct: 121 KEKYDNDQKVRHWVDMAMRIEGTNKTFGVHAAGVVISAEPLDEIVPLQRN-NDGXVITQY 179

Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--------------------VKVDL 598
            M+ +E  GL+K DFLGL+ LTL+QK++D + Q                       K + 
Sbjct: 180 FMEDLESMGLLKMDFLGLRNLTLIQKTIDLIEQNSGVRIDPDEITGQERKAQKILAKGEY 239

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN- 657
             +P D  ++Y LL      GIFQLESSGMRQ +  ++P  IEDI ++++LYRPGP+D  
Sbjct: 240 KTLPKDVKKSYELLEAGDLEGIFQLESSGMRQIVRDLKPSNIEDISSILALYRPGPLDAG 299

Query: 658 -IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            I  + NRK+GKE I    P++ P+L ET G ++YQEQ+M+ AQ ++GYSL +AD+LRRA
Sbjct: 300 LIPKFINRKHGKETIEYESPILXPVLNETYGXMVYQEQIMKXAQDMAGYSLGQADLLRRA 359

Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS---HAAAYAVI 772
           MGKK    M KQ+E+F+ GA+KNG+ K +A  +F+ +  FA+Y  +         Y  +
Sbjct: 360 MGKKKVAXMQKQREKFVDGAAKNGVKKQVAEELFQQMLNFAEYCLSADTEILTVEYGFL 418


>gi|81428867|ref|YP_395867.1| DNA polymerase III PolC [Lactobacillus sakei subsp. sakei 23K]
 gi|123564054|sp|Q38W73|DPO3_LACSS RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|78610509|emb|CAI55560.1| DNA-directed DNA polymerase III, polC-type [Lactobacillus sakei
            subsp. sakei 23K]
          Length = 1446

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 160/895 (17%), Positives = 301/895 (33%), Gaps = 165/895 (18%)

Query: 94   PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG 153
                  VL+  T  G + L +LVS   + +   ++ R+  S L  +  EG+++ +  S+G
Sbjct: 613  ARPAHAVLMAQTQAGLKNLFKLVS-ASMTEYYYRTPRLPKSKLDAL-REGILVGSACSNG 670

Query: 154  PIDRAFFFNSSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYT 206
             +  A        A  R   +       K ++   L   L R           +V++   
Sbjct: 671  EVFEAMMQKGYNEALDRAKYYDYIEVMPKAVYAPLLERELVRDNRALEEIIRNLVKVGEK 730

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
               P+VAT ++ +L+ ED     +L+        +        PD + ++  EM++ F  
Sbjct: 731  LNKPVVATGDAHYLNPEDAIYRKILIHSMGG---ANPLNRSKLPDVHFRSTDEMLTAFDF 787

Query: 267  LPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
            L   L   + +A   + +  +    P+  +    +    + E +    N+A         
Sbjct: 788  LGPELAQELVVANPQKIADQIDEIVPVKDKLYTPKMAGAEDEIQTLTMNRAHE------- 840

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
               +      +    RL  EL  I    FS  +LI    +  + K+   VG  RGS   S
Sbjct: 841  ---LYGAELPEIVEARLKKELKSIIGNGFSVIYLISQKLVYKSGKDGYLVG-SRGSVGSS 896

Query: 385  VTAYALTITDIDPLR-----------------------------------------FSLL 403
            + A    IT+++PL                                            + 
Sbjct: 897  LVATMTGITEVNPLPPHYRCSNCHYSEFFTKGEVGSGYDLADKDCPECGTPLDKDGHDIP 956

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL      +PD D++F  D +     Y +  +G   V +  T G++  K A   V +
Sbjct: 957  FETFLGFHGDKVPDIDLNFSGDYQPVAHNYTKVLFGENNVFRAGTIGTVADKTAYGYV-K 1015

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            A +    Q                          FR A      VDRL   ++   G+ R
Sbjct: 1016 AYERDTEQT-------------------------FRGA-----EVDRL---AKGSTGVKR 1042

Query: 524  HASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                H AGI++      +    P+     D  +    T F+   I    ++K D LG   
Sbjct: 1043 TTGQHPAGIIVVPDYMDIYDFTPIQFPADDQDAAWKTTHFDFHSIHD-NILKLDILGHDD 1101

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
             T+++   D        +D   IP DD     L +   +LG+   + +  +    G+   
Sbjct: 1102 PTMIRMLQDL-----SGIDPKSIPTDDPGVMALFSGTDSLGVTPEQINS-KMGTLGVPEF 1155

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQ 697
                +  ++    P     ++  +   +G +  + +   LI+  +   + VI  ++ +M 
Sbjct: 1156 GTRFVRGMLEETHPTTFSELLQISGLSHGTDVWLGNAEELINKGVVTLKDVIGCRDNIMM 1215

Query: 698  IAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
                       S +  + +R+   K I +              +         + +    
Sbjct: 1216 DLIHWGMDDSMSFNIMERVRKG--KGIPD-----------DWQQAMRDNENVPDWYIDSC 1262

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK----------- 803
                Y F K+HA AY +++ + A+ K ++P+ +  A  ++   + + +            
Sbjct: 1263 LKIKYMFPKAHATAYILMALRIAYFKVYFPIIYYCAYFSVRASDFDLVAMAQGKEGVKAR 1322

Query: 804  ----------------------KFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYY-SL 839
                                  +   +  +  I I    +      DF + D+       
Sbjct: 1323 MKEITDKGMEASTKEKNLLTVLEIANECLERGITIKMVDIEKSDSSDFLIQDDHTLLAPF 1382

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL-ESLVFAGALDC 893
             A+  +G   A+ I+ A  +KPF S ED  +R    K     L E+ V     D 
Sbjct: 1383 RAVPSLGDNVAKQIVSAREEKPFLSKEDLSNRGKVSKTLIEYLTENNVLNDLPDE 1437



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 42/94 (44%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + + +H++ S ++    + + + + A   QPAIA+TD  NL +  +        G++ + 
Sbjct: 339 IEMHLHTNMSQMDATNPIGDYVKQAAKWGQPAIAVTDHYNLQAFPDAYAAGKKNGVKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G ++++       + N       +   ++  V T
Sbjct: 399 GVEVNLVNDGTPVVYNLRDQVLESAEYVIFDVET 432


>gi|184155198|ref|YP_001843538.1| DNA polymerase III PolC [Lactobacillus fermentum IFO 3956]
 gi|183226542|dbj|BAG27058.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            fermentum IFO 3956]
          Length = 1447

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/932 (17%), Positives = 312/932 (33%), Gaps = 195/932 (20%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  MT+ G         + +L +T  G + L +LVS   + +   +  RI  S L     
Sbjct: 603  NKHMTDNGAYRHARPFHVTILAATQAGLKNLYKLVSLSNV-EYFARVPRIPRSVLNRY-R 660

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-------FGDRLYVNLQRHRGYDR 194
            EGL++ T  + G +  A        A++    +  +       +   L   +   + +  
Sbjct: 661  EGLLLGTACADGEVFTAMMQKGYGEAKRLAEFYDYIEVQPKPNYAPLLESGVITDQAHLE 720

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                 +V+L      P+VAT ++ +++ ED     +L+        +        PD + 
Sbjct: 721  DILKNMVKLGSALNKPVVATGDAHYINPEDAIYRKILINSQGG---ANPLNRTERPDVHF 777

Query: 255  KNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   EM+ +FS L E       ++NT  +       ++   P+         +  ++E +
Sbjct: 778  RTTDEMLDLFSFLGEDVAKQIVVDNTHLVTDMVDDGIR---PVKAGLYPPHMEGAEQEIQ 834

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            +     A       L           Q  + R++ ELN I    FS ++LI    +  + 
Sbjct: 835  DRTWTTAKEWYGDPL----------PQLVKDRVELELNSIVSNGFSVHYLIAQRLVAKST 884

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------------- 399
            K+   VG  RGS   SV A    IT+++PL                              
Sbjct: 885  KDGYLVG-SRGSVGSSVVATLSGITEVNPLPPHYRCPNCQYSHFYTKGEYSSGFDLPDKD 943

Query: 400  ------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                          + F+ FL      +PD D++F  D +     Y++  +G   V +  
Sbjct: 944  CPKCGTKMIGDGHDIPFQTFLGFKGNKVPDIDLNFSGDYQPIAHNYMKVLFGENNVYRAG 1003

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G++  K A   V                            +A   D   +     +  
Sbjct: 1004 TIGTVADKTAYGYV----------------------------KAYERDKEVQFRGAEEDR 1035

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRSD---LPVTQFNMKW 562
                  ++    G+ R    H AGI+I      +    P+             T F+   
Sbjct: 1036 ------LASGATGVKRTTGQHPAGIIIVPDDMEIYDFTPVQYPADDQSAAWETTHFDFHS 1089

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------- 613
            I    ++K D LG    T+++   D        ++   IP DD     L +         
Sbjct: 1090 IHD-NILKMDILGHDDPTMIRALQDL-----SGINPQSIPMDDPGVMSLFSSPEALGVTE 1143

Query: 614  -----TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
                   GTLG+ +  +  +R  LE   P     ++ +  L     +         KNG 
Sbjct: 1144 EQINSKTGTLGLPEFGTRFVRGMLEDTHPQNYSQLLQISGLSHGTGVWLDNAQELIKNGT 1203

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
              I ++    D ++ +     +  E            S    + +R+   K I EE    
Sbjct: 1204 ATIANVIGCRDNIMTDLIHYGLDSET-----------SFQVMEHVRKG--KGIPEEW--- 1247

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
                     +  +++      +        Y F ++HAAAY +++ + A+ K ++P+ + 
Sbjct: 1248 ---------QEKMTEVGVPQWYLDSCLKIKYMFPRAHAAAYVLMALRIAYFKVYFPLVYY 1298

Query: 789  AASMTLEMDNVEKIK---------------------------------KFCQDARQFNIQ 815
            AA  ++  D+ + +                                  +   +  +   +
Sbjct: 1299 AAFFSVRADDFDVVAMSHGKEAVKSAMQAITSKGNEATAKEKSLLTILELANEMLERGFK 1358

Query: 816  IMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      D+ +  + +     AI G+G   A+ I+ A  +KPF S +D   R   
Sbjct: 1359 FKMVDIERSDATDWLIDGDTLIAPFRAIPGLGINVAKQIVAAREEKPFLSKQDLSER--- 1415

Query: 875  KKLNRRVLESLVFAGALDCF-GYSRMQLLQSL 905
             K+++ ++E +     LD     +++ L   L
Sbjct: 1416 GKVSKTLIEFMTVNHVLDQLPDENQLSLFDML 1447



 Score = 68.5 bits (166), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ-----KACAAG 66
           + L +H++ S ++   ++   + +     QPAIAITD   L    E        K   + 
Sbjct: 336 IELHLHTTMSTMDATNTIGEYVKQAIKWGQPAIAITDHAGLQGFPEAFSSSYDGKKDESK 395

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           I+ + G + ++       + N+   P    P ++  + T
Sbjct: 396 IKMLYGVEANVVDDGVPLVYNENHLPLKGQPYVIFDIET 434


>gi|239631345|ref|ZP_04674376.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301066623|ref|YP_003788646.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang]
 gi|239525810|gb|EEQ64811.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300439030|gb|ADK18796.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus
            casei str. Zhang]
          Length = 1444

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 173/955 (18%), Positives = 319/955 (33%), Gaps = 203/955 (21%)

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            + A   G+  +      +   D  K               ++   T  G + L +LVS  
Sbjct: 583  EAAKMYGMTTLNQLNDRVGAGDAYKAARPS--------HAIVFAKTQAGLKNLFKLVSLS 634

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK---- 175
             +     +  R+  S LQ++  EGL++ +  SSG +  A        A  +   +     
Sbjct: 635  NVK-YFYRVPRVPRSQLQKL-REGLLVGSACSSGEVFTAMMQKGEAEARAKASFYDYLEV 692

Query: 176  ---KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
                ++   +   L +   + +    +V+++    E P+VAT ++ +L + D     +L+
Sbjct: 693  QPLPVYQPLIEAGLIKGEAHLKDIIQKVIKIGSELEKPVVATGDAHYLDQHDAIYRQILI 752

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQ 286
                    +        PD + ++ SEM++ FS L E       ++N+  IA      + 
Sbjct: 753  HSQGG---ANPLNRHSLPDVHFRSTSEMLTDFSWLGEEKAHELVVDNSNLIANWVDDDI- 808

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               P+  +    E   +    E  L++  +                      QRLD EL 
Sbjct: 809  --TPVKDKLYTPEVPGV----EENLKHDVMTTAHELYGDPL------PDIVAQRLDKELK 856

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I    FS  + I    +  + K+   VG  RGS   S+ A    IT+++PL        
Sbjct: 857  SIIGNGFSVIYNIAQRLVLKSNKDGYLVG-SRGSVGSSLAATMAGITEVNPLPPHYRCPN 915

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                                + FE FL      +PD D++F  D
Sbjct: 916  CQYSEFFTHGEIGSGFDLPDKQCPKCGADLHKDGHDIPFETFLGFHGDKVPDIDLNFSGD 975

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +     Y++  +G +   +  T G++  K A   V +A +    Q              
Sbjct: 976  YQPIAHNYIKVMFGEDHSFRAGTIGTVADKTAYGYV-KAYERDTGQ-------------- 1020

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLV 543
                       + R A         +  ++Q   G+ R    H AGI+I   D  +    
Sbjct: 1021 -----------QLRGA--------EIDRLAQGDTGVKRTTGQHPAGILIVPADMDIYDFT 1061

Query: 544  PMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+             T F+   I    ++K D LG    T+++   D        V+   
Sbjct: 1062 PIQYPADDQNAAWMTTHFDFHSIHD-NILKMDVLGHDDPTMIRMLQDL-----SGVEPKS 1115

Query: 601  IPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            IP DD     L +                GTLGI +  +  +R  LE  +P    +++ +
Sbjct: 1116 IPTDDPGVMALFSGTKSLGVTPEQINSKMGTLGIPEFGTRFVRGMLEETKPTTFSELLQI 1175

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
              L     +                 +   LI   +   + VI  ++ +M +  +  G  
Sbjct: 1176 SGLSHGTDVWLG--------------NAEELIKQGIVTLKEVIGCRDNIM-MDLIHWGME 1220

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             S A  +   + K      D QK                  + +        Y F K+HA
Sbjct: 1221 DSMAFNIMEHVRKGRGIPDDWQKAMR---------ENENVPDWYIESCLKIKYMFPKAHA 1271

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------- 800
             AY +++ + AW K HYP+ +  A  ++  ++ +                          
Sbjct: 1272 TAYILMALRIAWFKVHYPLIYYTAYFSVRAEDFDLAAMSHGKEAVKAAMKEITDKGMDAS 1331

Query: 801  -------KIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIYYSLAAIKGVGTTTAR 851
                    + +   +  +   +I    V        +   D+ I     A+ G+G   A+
Sbjct: 1332 TKEKQLLTVLEIANECLERGFKIKMIDVTKSDSHNFLIQDDHTILAPFRAVPGLGDNVAK 1391

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQSL 905
             I+ A  +KPF S ED  +R    K+++ +++ +     LD     +++ L   L
Sbjct: 1392 QIVAAREEKPFLSKEDLANR---GKVSKTLIDYMTTNHVLDDLPDENQLSLFDGL 1443



 Score = 78.9 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++    +++ + +       AIA+TD   L +  E    A  AG++ + 
Sbjct: 334 VELHLHTNMSQMDAMNPISDYVKRAKEWGHKAIAVTDHAGLQAYPEAHSAAVKAGLKMLY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFP 94
           G ++++ + D   +  +   P  
Sbjct: 394 GVEINL-VDDGTPVAYRADEPRD 415


>gi|302670324|ref|YP_003830284.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316]
 gi|302394797|gb|ADL33702.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316]
          Length = 1529

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 171/899 (19%), Positives = 322/899 (35%), Gaps = 174/899 (19%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                 ++L     G   L  LVS+ ++ D  ++   I  S L +   EGLI+ +   +G 
Sbjct: 686  RPNHCIILAKNTLGRVNLYTLVSKSHI-DYFRRFPLIPKSELLKY-REGLIIGSACCAGE 743

Query: 155  IDRAFFFNSSQVAEKRL------LTFKKLFGDRLYVNLQRHRGYD-----RYRESQVVQL 203
            +  A            L      L  + +  +   V+  R+   +     R    ++V+L
Sbjct: 744  LYGAVVEGRPPEEIAGLVNFYDYLEIQPVGNNHFMVDSDRYEDINSDDDIREINKEIVRL 803

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                  P+VAT ++ FL+ ED     ++MA      ++ ++   +    +L+   EM++ 
Sbjct: 804  GEQFNKPVVATCDAHFLNPEDEIYRTIIMA---GKGMNDEEPAPL----FLRTTEEMMAE 856

Query: 264  FSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
            F  L         ++NT +I   C  I  V     P  IE   + + K       +KA  
Sbjct: 857  FDYLGGDKAKEIVIDNTRKILDMCDSISPVRPDKCPPVIENSDEILTKI----CYDKAHE 912

Query: 318  GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
                 L           +  ++RL+ ELN I +  F+  ++I    +  + ++   VG  
Sbjct: 913  IYGEEL----------PEIVQERLERELNSIIKNGFAVMYIIAQKLVWKSNEDGYLVG-S 961

Query: 378  RGSGAGSVTAYALTITDIDPLR-------------------------------------- 399
            RGS   S  A+   IT+++ L                                       
Sbjct: 962  RGSVGSSFVAFTSGITEVNSLSPHYVCPKCKYSDFDSPEVLAFGGNSGCDMPDKRCPKCG 1021

Query: 400  -------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
                   F + FE FL       PD D++F  + + +  +Y +  +G+ +  +  T  SL
Sbjct: 1022 TMMYKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHKYTEVIFGYGQTFRAGTIASL 1081

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
              K A   V +                                    +   A      + 
Sbjct: 1082 ADKTAFGFVKKYY----------------------------------DGIGASKRKSEIN 1107

Query: 513  EISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAG 567
             I Q   G+ R    H  GI++      ++   P+             T ++   I+   
Sbjct: 1108 RIVQGCTGIRRGTGQHPGGIIVLPVGENINSFCPVQHPANDMTTATITTHYDYHSIDH-N 1166

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            L+K D LG    T+++   D        +D  L+P DD     L      L +   +  G
Sbjct: 1167 LLKLDILGHDDPTMIRFLQD-----CTGLDPKLVPLDDKNVMSLFMNTTALNVTPEQLGG 1221

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQ 686
             +    G+     +  + +V    P  + +++  +   +G +  + +   LI        
Sbjct: 1222 TKLGCLGLPEFGTDFAMQMVIDAGPSSLSHLIRISGLSHGTDVWLGNAQTLIQEGTATID 1281

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
              I  ++ +M I  +  G   SE+  +  A+ K    ++   KE+      K+ I +   
Sbjct: 1282 TCICCRDDIM-IYLIQKGLDKSESFKIMEAVRK---GKVAGGKEKNWPEWKKDMI-EHGV 1336

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE----------- 795
             + +    +   Y F K+HAAAY +++++ A+ K + P  F AA  ++            
Sbjct: 1337 PDWYIWSCEKIKYMFPKAHAAAYVMMAWRIAYFKVYIPQAFYAAWFSIRAKAFNYEHMCL 1396

Query: 796  ------------MDNVEKI----------KKFCQDARQFNIQIMPPSV-NTPCVDFKVGD 832
                         +  +++           +  ++  +  I+ MP  +      DF+V  
Sbjct: 1397 GENHLHAIMREYQNKKDELTNAQQAEYGDMRLVEEMYERGIEFMPIDIFKVKSRDFQVIG 1456

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            ++I  +L +I G+G   A  I+EA+ D PF S +DF  R    K  + V+E +   G L
Sbjct: 1457 DKIMPALTSIDGMGEKAADQIVEAAKDGPFLSKDDFRQRT---KCPQGVIEKMADMGLL 1512



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 12/84 (14%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++G   + +I+ +      P IAITD       ++    A         
Sbjct: 392 VELHCHTKMSDMDGVSEVKDIVKQAYKWGMPGIAITDH----GVVQALTDA--------N 439

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPT 95
               D+   +N +    G+ P   
Sbjct: 440 HVWEDLYSGENKRRKEAGEPPIER 463


>gi|191638563|ref|YP_001987729.1| DNA polymerase III PolC [Lactobacillus casei BL23]
 gi|190712865|emb|CAQ66871.1| DNA polymerase III polC-type (PolIII) [Lactobacillus casei BL23]
 gi|327382601|gb|AEA54077.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            casei LC2W]
 gi|327385799|gb|AEA57273.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            casei BD-II]
          Length = 1444

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 174/955 (18%), Positives = 320/955 (33%), Gaps = 203/955 (21%)

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            + A   G+  +      +   D  K               ++   T  G + L +LVS  
Sbjct: 583  EAAKMYGMTTLNQLNDRVGAGDAYKAARPS--------HAIVFAKTQAGLKNLFKLVSLS 634

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK---- 175
             +     +  R+  S LQ++  EGL++ +  S+G +  A        A  +   +     
Sbjct: 635  NVK-YFYRVPRVPRSQLQKL-REGLLVGSACSNGEVFTAMMQKGEAEARAKASFYDYLEV 692

Query: 176  ---KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
                ++   +   L +   + +    +++ +    E P+VAT ++ +L + D     +L+
Sbjct: 693  QPLPVYQPLIEAGLIKGEAHLKDIIQKIINIGSELEKPVVATGDAHYLDQHDAIYRQILI 752

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQ 286
                    +        PD + ++ SEM++ FS L E       ++N+  IA      + 
Sbjct: 753  HSQGG---ANPLNRHSLPDVHFRSTSEMLTDFSWLGEEKAHELVVDNSNLIANWVDDDI- 808

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               P+  +    E   +    E  L++  +                      QRLD EL 
Sbjct: 809  --TPVKDKLYTPEVPGV----EENLKHDVMTTAHELYGDPL------PDIVAQRLDKELK 856

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I    FS  + I    +  + K+   VG  RGS   S+ A    IT+++PL        
Sbjct: 857  SIIGNGFSVIYNIAQRLVLKSNKDGYLVG-SRGSVGSSLAATMAGITEVNPLPPHYRCPN 915

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                                + FE FL      +PD D++F  D
Sbjct: 916  CQYSEFFTHGEIGSGFDLPDKQCPKCGADLHKDGHDIPFETFLGFHGDKVPDIDLNFSGD 975

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +     Y++  +G +   +  T G++  K A   V +A +    Q              
Sbjct: 976  YQPIAHNYIKVMFGEDHSFRAGTIGTVADKTAYGYV-KAYERDTGQ-------------- 1020

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLV 543
                       + R A      +DRL   +Q   G+ R    H AGI+I   D  +    
Sbjct: 1021 -----------QLRGA-----EIDRL---AQGDTGVKRTTGQHPAGILIVPADMDIYDFT 1061

Query: 544  PMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+             T F+   I    ++K D LG    T+++   D        V+   
Sbjct: 1062 PIQYPADDQNAAWMTTHFDFHSIHD-NILKMDVLGHDDPTMIRMLQDL-----SGVEPKS 1115

Query: 601  IPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            IP DD     L +                GTLGI +  +  +R  LE  +P    +++ +
Sbjct: 1116 IPTDDPGVMALFSGTKSLGVTPEQINSKMGTLGIPEFGTRFVRGMLEETKPTTFSELLQI 1175

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
              L     +                 +   LI   +   + VI  ++ +M +  +  G  
Sbjct: 1176 SGLSHGTDVWLG--------------NAEELIKQGIVTLKEVIGCRDNIM-MDLIHWGME 1220

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             S A  +   + K      D QK                  + +        Y F K+HA
Sbjct: 1221 DSMAFNIMEHVRKGRGIPDDWQKAMR---------ENENVPDWYIESCLKIKYMFPKAHA 1271

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------- 800
             AY +++ + AW K HYP+ +  A  ++  ++ +                          
Sbjct: 1272 TAYILMALRIAWFKVHYPLIYYTAYFSVRAEDFDLAAMSHGKEAVKAAMKEITDKGMDAS 1331

Query: 801  -------KIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIYYSLAAIKGVGTTTAR 851
                    + +   +  +   +I    V        +   D+ I     A+ G+G   A+
Sbjct: 1332 TKEKQLLTVLEIANECLERGFKIKMIDVTKSDSHNFLIQDDHTILAPFRAVPGLGDNVAK 1391

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQSL 905
             I+ A  +KPF S ED  +R    K+++ +++ +     LD     +++ L   L
Sbjct: 1392 QIVAAREEKPFLSKEDLANR---GKVSKTLIDYMTTNHVLDDLPDENQLSLFDGL 1443



 Score = 78.9 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++    +++ + +       AIA+TD   L +  E    A  AG++ + 
Sbjct: 334 VELHLHTNMSQMDAMNPISDYVKRAKEWGHKAIAVTDHAGLQAYPEAHSAAVKAGLKMLY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFP 94
           G ++++ + D   +  +   P  
Sbjct: 394 GVEINL-VDDGTPVAYRADEPRD 415


>gi|310827165|ref|YP_003959522.1| DNA polymerase III PolC [Eubacterium limosum KIST612]
 gi|308738899|gb|ADO36559.1| DNA polymerase III PolC [Eubacterium limosum KIST612]
          Length = 1369

 Score =  419 bits (1078), Expect = e-114,   Method: Composition-based stats.
 Identities = 179/965 (18%), Positives = 315/965 (32%), Gaps = 204/965 (21%)

Query: 37   AADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTV 96
                    A+ D  ++ SA  F +    A  + +        + D  ++   G T     
Sbjct: 490  VDMGHHHRALDD--SVCSAKIFVKLMELAQKRDVEEVAGLNGLMDVEQIIKSGDT----- 542

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
              I++      G + L +LVS  ++ +   +  RI  S L     E LI+ +   +G + 
Sbjct: 543  YHIIIYAKNQAGLKDLYKLVSEAHI-NYFYRRPRIPKSLLA-AHRENLIIGSACEAGELY 600

Query: 157  RAFFFNSSQVAEKRLLTFKKLFG-----DRLYV--NLQRHRGYD-RYRESQVVQLAYTHE 208
            +A   N  +     +  F   F      +  Y+  N   H   +      ++V+L     
Sbjct: 601  KAVLKNVPKNRLDEIADFYDYFEVQPLGNNEYLLRNETVHSMEELADVNRRIVELGREKG 660

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
              +VAT +  F+   D    ++L A        +       P  Y ++  EM+  F+ + 
Sbjct: 661  KLVVATGDVHFVDPSDAYFREILQAGQGYKDSHE------QPPLYYRSTQEMLDEFTYVD 714

Query: 269  --EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
               A E  V   RR + +     PI     +     I +  ++E+R+             
Sbjct: 715  PQTAYELVVTNPRRVAELFDDVKPI----PDGTFPPIIEGSDDEIRDMVYKKAHEMYGDP 770

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                        QR+  EL+ I    +S  +LI    +  + ++   VG  RGS   S+ 
Sbjct: 771  L------PDIVEQRVKRELDSIIGNGYSVLYLIAQKLVHHSLEDGYLVG-SRGSVGSSLV 823

Query: 387  AYALTITDIDPL-----------------------------------------RFSLLFE 405
            A    IT+++ L                                          F + FE
Sbjct: 824  AMLCGITEVNSLAPHYVCPNCKHYEFFDSTKVGVGPDLPNADCPECGHPMNKDGFDIPFE 883

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
             FL  +    PD D++F  + + E   Y +  +G  +V +  T  +L  K A   V    
Sbjct: 884  TFLGFEGDKEPDIDLNFSGENQPEAHHYTEVLFGEGKVYRAGTIATLADKTAFGYVKNFF 943

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
                    R                                 ++R++E      G+ R  
Sbjct: 944  DENGVTAPR-------------------------------AEMERVIE---GCAGVKRTT 969

Query: 526  STHAAGIVIG--DRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              H  G+++   D+ +    P+             T F+   I    L+K D LG    T
Sbjct: 970  GQHPGGVMVVPKDKDIYDFTPIQYPADDRDCGTMTTHFDYHSI-SGRLLKLDILGHDDPT 1028

Query: 581  LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESS 626
            +L+   D        +D   IP DD +   L T                GT GI +  ++
Sbjct: 1029 MLRMLKDITG-----LDPQEIPLDDEKVISLFTGTSALDLKDDDFDIPLGTCGIPEFGTN 1083

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
             +RQ +   +P    D+I +  L       ++   N +            L+       +
Sbjct: 1084 FVRQMVLDTKPTAFSDLIRISGLSHGT---DVWTNNAQ-----------DLVRSGTATIK 1129

Query: 687  GVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             VI  ++ +M     +      S S  + +R+  G    EE                + +
Sbjct: 1130 DVICTRDDIMLGLISMGLAPKESFSIMEHVRKGKGLTEDEE--------------AYMKE 1175

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE-------- 795
                  +    K   Y F K+HAAAY +++++ A+ K +YP+ + A   ++         
Sbjct: 1176 NNVPAWYIDSCKKIKYMFPKAHAAAYVMMAFRIAYYKVYYPLAYYATYYSIRAKEFNLEK 1235

Query: 796  -MDNVEKIKKFCQDARQFNIQIMPPS-------------------------VNTPCVDFK 829
              +  E +KK   + R    +                                +   +FK
Sbjct: 1236 MTNGKETVKKTLAEIRSQGNKASNKDQQLLTSLELALEMYCRGFGFKNVDVYESHYSEFK 1295

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +  N +   L AI G+G   A  I E +  +PF S ED  +R    K N   LE     G
Sbjct: 1296 IIGNDLLPPLNAIDGLGDKAAMQIYEEAQKRPFISKEDLQTRAKVNKSNIEKLEQF---G 1352

Query: 890  ALDCF 894
             L   
Sbjct: 1353 CLSSL 1357



 Score = 69.6 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 34/82 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS YS ++    +  I+ +       AI ITD   L +  E    +   GI+ + 
Sbjct: 269 VELHLHSQYSSMDAVSKVAKIMKQANDFGHDAIGITDHGVLQAYPEMMSLSKKYGIKVLY 328

Query: 72  GCQLDIDMQDNLKMTNQGKTPF 93
           G +  +   D   +T +    F
Sbjct: 329 GVEGYLVDDDQYIVTGEQNESF 350


>gi|312869005|ref|ZP_07729182.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            oris PB013-T2-3]
 gi|311095431|gb|EFQ53698.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            oris PB013-T2-3]
          Length = 1444

 Score =  419 bits (1078), Expect = e-114,   Method: Composition-based stats.
 Identities = 167/948 (17%), Positives = 318/948 (33%), Gaps = 178/948 (18%)

Query: 55   ALEFSQKA-CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
              +F + A     I+ +      +   D  K              + LL  T  G + L 
Sbjct: 579  LYKFLKDAEKRYEIRYVDDLNQHMAENDAYK--------HARPFHVTLLAQTQAGLKNLF 630

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +LVS   +     +  RI  + L +   EGL++ T  SSG +  A        A K+   
Sbjct: 631  KLVSLSNVR-YFHRVPRIPRTVLTKY-REGLLLGTACSSGEVFTAMMEKGYPEALKKARY 688

Query: 174  FKKL---FGDRLYVNLQRHRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYE 226
            +  +           L+ H   DR     ++Q    L    + P+VAT +  +++  D  
Sbjct: 689  YDYIEIQPRPNYAPLLETHVIADRDHLDDILQNMVKLGTELKKPVVATGDVHYINPHDGI 748

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARR 280
               +L+          + R    PD + +   EM+  FS L E       ++N+  IA  
Sbjct: 749  YRRILINSQGGANPLNRTRR---PDVHFRTTDEMLEEFSFLGEDTAKQVVVDNSHAIADM 805

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++   P+  +         ++E ++   N A A                 +  + R
Sbjct: 806  IADDIR---PVKDKLYTPHMKGAEQEIQDRTWNTAKAWYG----------NPLPKIVKDR 852

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ ELN I +  FS  +LI    +  + K+   VG  RGS   SV A    IT+++PL  
Sbjct: 853  VELELNSIVKNGFSVIYLIAQRLVAKSNKDGYLVG-SRGSVGSSVVATLSGITEVNPLPP 911

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + F+ FL      +PD D
Sbjct: 912  HYRCPKCQFAHFYTKGEYSSGFDLPEKKCPKCGTLLVKDGHDIPFQTFLGFKGNKVPDID 971

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +     Y++  +G E V +  T G++  K A   V +A +             
Sbjct: 972  LNFSGDYQPIAHNYMKVLFGEENVFRAGTIGTVADKTAYGYV-KAFERD----------- 1019

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP- 538
                          +D +FR A            +SQ   G+ R    H AGI+I     
Sbjct: 1020 --------------NDVQFRGAEED--------RLSQGATGVKRTTGQHPAGIIIVPDDM 1057

Query: 539  -LSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T F+   I    ++K D LG    T+++   D       
Sbjct: 1058 DIYDFTPVQYPADDQNAAWETTHFDFHSIHD-NILKMDILGHDDPTMIRALQDL-----S 1111

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D   IP +D     L ++   LG+ + +    +    G+       +  ++    P  
Sbjct: 1112 GIDPKTIPMNDPGVMALFSSPRILGVTEEQIQS-KTGTLGLPEFGTRFVRGMLDDTHPKN 1170

Query: 655  IDNIVVYNNRKNGKEKI-VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               ++  +   +G      +   LI         VI  ++ +M       G     +  +
Sbjct: 1171 YSQLLQISGLSHGTGVWLDNAQELIKEGTATIANVIGCRDNIMTDLIHY-GLDSETSFQV 1229

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K      + Q +    G  +  +   + +           Y F ++HAAAY +++
Sbjct: 1230 MEHVRKGRGIPDEWQSKMLKVGVPQWYLDSCLKIK----------YMFPRAHAAAYVLMA 1279

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------------------ 803
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1280 LRIAYFKVYFPLVYYCAFFSVRADDFDIVAMAHGKEAVKARMAEISNKGNDASAKEKSLL 1339

Query: 804  ---KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
               +   +  +   +     +      ++ +  N +     AI G+G + A+ I+ A  +
Sbjct: 1340 TILELANEMLERGFKFKMVDLERSDASNWLIDGNSLIAPFRAIPGLGLSVAKQIVAAREE 1399

Query: 860  KPFDSLEDFCSRVDSKKLNRRVL-ESLVFAGALDCFGYSRMQLLQSLD 906
            +PF S E+   R    +     + E+ V     D    +++ L   L 
Sbjct: 1400 RPFLSKEELADRGKVSQTLIDFMTENHVIDQLPDS---NQLDLFSDLG 1444



 Score = 77.7 bits (190), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H+  S ++   S+  I  + +   QPAIA+TD  N+ +  E  +      ++ I 
Sbjct: 337 IELHTHTEMSQMDATNSITEIAKQASKWGQPAIAVTDHGNVQAFPEAYKAGKKFKLKMIY 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++       + N+          ++  V T
Sbjct: 397 GMEANVVDDGVPLVYNENHAQLKDNTYVIFDVET 430


>gi|222833094|gb|EEE71571.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  419 bits (1078), Expect = e-114,   Method: Composition-based stats.
 Identities = 158/501 (31%), Positives = 250/501 (49%), Gaps = 36/501 (7%)

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            +  YFL V D +++A+  +I +  GRGS A SV  + L IT +DP   +LL  RF++ +
Sbjct: 3   GYEMYFLTVHDIVRFARSQDI-LCQGRGSAANSVVCFCLGITAVDPTLQTLLIARFISRE 61

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R   PD D+DF   RR+ VI+Y+  KYG  R A        + + ALRD G+AL +    
Sbjct: 62  RSEPPDIDVDFEHARRETVIQYIYEKYGRGRAALTAVVSCWRTRGALRDAGKALGVDAVL 121

Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFRE------------------------ARLADPS 507
           +D + +   +        QA   +    +                         +L+   
Sbjct: 122 IDAMARQ--HHWFSDAEDQAAEPEPEPDDPALGWVRSKLLRLARLRERLGDDCPQLSPQR 179

Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
               LE++ +L    RH S H  G V+ D PL++LVP+         V Q++   ++   
Sbjct: 180 ARLWLELALQLRDSPRHLSQHVGGFVLTDGPLTRLVPVEPAAMEGRSVIQWDKDDLDTMN 239

Query: 568 LIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
           L+K D L L  LT+L+ SL    A RG + +L+ IP +D  TY ++    T+G FQ+ES 
Sbjct: 240 LLKVDVLALGMLTVLRGSLHARAALRGPRWELADIPKEDAATYDMICRADTVGTFQIESR 299

Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN------NRKNGKEKIVSIHPLIDP 680
                L  ++P    D++  V++ RPGPI   +V+        R+ G E ++   P ++ 
Sbjct: 300 AQMSMLPRLRPRVFYDLVVEVAIVRPGPIQGGMVHPYLQARERRRQGGELVLE-KPALEK 358

Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKN 739
            LK T GV I+QEQVMQIA + + +S  +AD LRR+M   + K  + + +   I G   N
Sbjct: 359 ALKRTLGVPIFQEQVMQIAMIAANFSAGDADELRRSMAAWRRKGGVHRFERPLIDGMLAN 418

Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
           G S   A  IF  +  F +YGF +SHA ++A+++Y +AW+K H P  FL A +  +    
Sbjct: 419 GYSAEFAQAIFRQMLGFGEYGFPESHAYSFAMLAYASAWLKRHEPACFLMALLNAQPMGF 478

Query: 800 EKIKKFCQDARQFNIQIMPPS 820
               +  QDAR+  ++++P  
Sbjct: 479 YTPSQLIQDARRHGVRVLPVD 499


>gi|315111548|ref|YP_813210.2| DNA polymerase III, alpha subunit ( type) [Lactobacillus delbrueckii
            subsp. bulgaricus ATCC BAA-365]
          Length = 1445

 Score =  419 bits (1078), Expect = e-114,   Method: Composition-based stats.
 Identities = 181/946 (19%), Positives = 322/946 (34%), Gaps = 187/946 (19%)

Query: 57   EFSQKACAAG------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE-GY 109
              +Q A A G      +        + D+      +N           I +L    + G 
Sbjct: 570  RANQDAEATGYLMFKLLDAFNDKYHEDDLGKMNDYSNGEGYKRARPTHITVLAQNQKPGL 629

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            + L ELVS   +    K  +R   S L+ +   GL+  +  S G +  A      + A+K
Sbjct: 630  RNLYELVSLAGIKYNFKG-LRTPKSELRRLHA-GLLYGSACSQGEVFIAMMQKGYEEAKK 687

Query: 170  RLLTFK--KLFGDRLYVNLQRHR-----GYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
            +   +   ++     Y +L                + + +L      P+VAT+++ ++ +
Sbjct: 688  KAEFYDFLEIQPPSNYSSLIADGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDK 747

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
             +    DVL+A          +R +  PD +     EM+  FS + E +   V I+    
Sbjct: 748  HEAIYRDVLLAAQRG----NPNRNKQHPDLHFYTTQEMLDEFSFMGEDIAKEVVISNPNK 803

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                +   + P   E     I    E  +R                       + + RLD
Sbjct: 804  INAMIDEGVQPVQDESFPPKIPHTAER-VRKLTYDKAHELYGD------PLPDNIQARLD 856

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF-- 400
             EL+ I    +   +LI    +  + K+   VG  RGS   S+ A  + IT+I+P+    
Sbjct: 857  RELDAIIGNGYGVVYLISQMLVAKSVKDGYLVG-SRGSVGSSLVATMMGITEINPMPPHY 915

Query: 401  ---------------------------------------SLLFERFLNPDRMSMPDFDID 421
                                                   ++ FE FL      +PD D++
Sbjct: 916  RCPKCKQSEFFENGEYASGFDLPDKKCPDCQVMMVKDGQNIPFETFLGFHGDKVPDIDLN 975

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  D +     +++  +G     +  T G+L  K A+  V                    
Sbjct: 976  FSGDYQPVAHNFIRVMFGPNHSFKAGTVGTLADKKAIGYVKHYQDEHP------------ 1023

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPL 539
                              E ++ +  VDRL   +  + G+      H AGIV+   D+ +
Sbjct: 1024 ------------------EIKMNNAEVDRL---AIGVTGVKATTGQHPAGIVVLPDDKDI 1062

Query: 540  SQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
             +L P+         +   T F+   I    L+KFD LG +  T+++   D        +
Sbjct: 1063 YELTPLQYPSDDISKEWKTTHFDFHQIHD-NLLKFDILGHQDPTMIRMLQDL-----SGI 1116

Query: 597  DLSLIPFDDHETYHLLT--------------TKGTLGIFQLESSGMRQALEGMQPDCIED 642
            D   IP DD +   L +                GTLG+ +  +  +R  LE  +P    +
Sbjct: 1117 DPLTIPTDDPKVMSLFSSPEALGVTPEQINSKTGTLGLPEFGTPFVRGMLEETKPSTFAE 1176

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++ +  L     +          NG  K+ S+    D ++ +     + +E         
Sbjct: 1177 LLQISGLSHGTDVWLGNAEELINNGTCKLKSVIGCRDNIMTDLIRWGVKEE--------- 1227

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
               + S  + +R+  G    E M   KE          I      +  ++      Y F 
Sbjct: 1228 --VAFSTMETVRKGKGI-SDENMAVLKEN-------KNIPDWYIPSCLKI-----KYMFP 1272

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------------------- 800
            K+HAAAY +++ + AW K +YP  + AA  ++  D V+                      
Sbjct: 1273 KAHAAAYILMALRVAWFKVYYPEIYYAAYFSVRADKVDLEAMSRGKNTVVALINRIKEKG 1332

Query: 801  ----KIKK-------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGT 847
                K++K          +A +  I      +N      +K+ D         A+ G+G 
Sbjct: 1333 TAATKLEKDLQTYMELVNEAIERGINFKMVDINESEATTYKIVDKHTILAPFNAVDGLGD 1392

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE-SLVFAGALD 892
            + A+ I+ A ++ PF S ED   R    +      E + V  G  D
Sbjct: 1393 SAAKQIVAARSEAPFLSKEDLQVRGKVSQKIMDFFENNNVLEGMPD 1438



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 1   LTQYLEKSPSF------VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           LT+++ +  ++      V L VH++ S L+    + +I+       Q A+AITD   L +
Sbjct: 323 LTEHVGRQEAYQGEEKHVELHVHTNMSQLDATSDVADIIKTAKKFGQQAVAITDHAGLQA 382

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                +     G++ I+G + ++     L + N     +     ++  V T
Sbjct: 383 LPNAFEAGKKTGMKVIMGLEANMVEDHGLLVLNPASMKYEDQEFVIFDVET 433


>gi|160893350|ref|ZP_02074137.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50]
 gi|156865042|gb|EDO58473.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50]
          Length = 1514

 Score =  419 bits (1078), Expect = e-114,   Method: Composition-based stats.
 Identities = 155/938 (16%), Positives = 315/938 (33%), Gaps = 147/938 (15%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  +     G++ +          D+     +           ++L     G   L  L
Sbjct: 614  VKLYEMLVERGVKTVEDVNELGSASDDTIKKGR-------TYHGIILAKNEIGRVNLYRL 666

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL---- 171
            +S  ++     +  R+ +S + +   EGLI+ +   +G + RA   ++      RL    
Sbjct: 667  ISEAHVR-YFNRRPRMPMSMINKY-REGLILGSACEAGELFRAVVDDAPDEEIARLVNFF 724

Query: 172  --LTFKKLFGDRLYV---NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
              L  + +  +                +    ++V+L      P+VAT +  FL  ED  
Sbjct: 725  DYLEIQPIGNNEFMTRKKENPCTIEDLQNYNKRIVELGRLFNKPVVATCDVHFLDPEDSI 784

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFI 284
               ++M                 P  Y +   EM++ F  L   +A E  +      + +
Sbjct: 785  YRAIIMKSKGFEDAVN------QPPLYFRTTEEMLAEFEYLGSEKAREVVITNTNLIADM 838

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            ++   P+ P         I +  +  L N                     +   +RL+ E
Sbjct: 839  VEYMDPVRPDKAPP----IIENSDETLTNICYEKAHKIYGPDL------PEVVVERLERE 888

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----- 399
            L+ I    F+  ++I    +  +  +   VG  RGS   S  A    IT+++PL      
Sbjct: 889  LHSIISNGFAVMYIIAQKLVWDSNDHGYLVG-SRGSVGSSFVATMAGITEVNPLSAHYIC 947

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL       PD D
Sbjct: 948  PECHFVDFDSELVKSYSGMSGCDMPDRDCPRCGHPLIKEGHDIPFETFLGFKGDKEPDID 1007

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  + +     Y +  +G  +  +  T  ++  K A   V    +   ++ +   +  
Sbjct: 1008 LNFSGEYQSCAHAYTEVLFGKGKAFRAGTVTTVADKTAYGYVYNYFK-DLAKDEARAEAT 1066

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR-- 537
                     ++   D+      R  +        ++    G+ R    H  G+++  R  
Sbjct: 1067 AMGDLTQKEIEKYVDEKAIVTKRSCEME-----RLAIGCTGVKRSTGQHPGGMIVLPRHE 1121

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+ +       D+  + F    I+   L+K D LG    T++++  D       
Sbjct: 1122 EIYSFTPIQKPANDMTTDVVTSHFEYHSIDH-NLLKLDILGHDDPTMIRRLEDLTG---- 1176

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D + I  DD +   L     +L I   + +G+     G+     +  + ++    P  
Sbjct: 1177 -LDATTIRLDDPDVMALFHGTESLHITPEDINGIPLGSLGVPEFGTDFAMQMLIDANPQN 1235

Query: 655  IDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEA 710
              ++V      +G +  + +   LI          I  ++ +M     +    G +    
Sbjct: 1236 FSDLVRIAGLAHGTDVWLGNAQELIKSGQCTISTAICCRDDIMVYLIHMGLESGTAFQIM 1295

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + +R+    K K     + E +      +G+        +    +   Y F K+HAAAY 
Sbjct: 1296 ENVRKGNVAKGK---CAKWEEWKEDMKAHGVPD-----WYIWSCQKIKYMFPKAHAAAYV 1347

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMD--------------------------------N 798
            +++++ A+ K +YP+++ AA  ++                                   +
Sbjct: 1348 MMAWRIAYFKVNYPLQYYAAFFSIRASAFSYEMMCFGKEKVLYHINMIQSIDKNKRTAKD 1407

Query: 799  VEKIK--KFCQDARQFNIQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
             +K+K  K   +      + MP  +     + F+V D +I  SLA+I+G+G   A+ + +
Sbjct: 1408 EDKLKDLKLVLEMYARGFEFMPIDIYVADDIRFQVIDGKIMPSLASIEGMGEKAAKQLKD 1467

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVL-ESLVFAGALD 892
            A+    F S ED  +     K     L E  +  G  D
Sbjct: 1468 AACKGRFISKEDLQAHSKIGKSAIDKLSELGILDGMPD 1505



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC--AAGIQP 69
           V L +H+  S ++  + +  I+ +      PAIAITD   +  A   +  A     G + 
Sbjct: 372 VELHMHTVMSEMDSVVDIEKIVKRANDWGHPAIAITDHG-VAQAFPIAAHAKGMKDGFKL 430

Query: 70  IIGCQLDI 77
           I GC+   
Sbjct: 431 IFGCEGYF 438


>gi|325126001|gb|ADY85331.1| DNA polymerase III alpha chain [Lactobacillus delbrueckii subsp.
            bulgaricus 2038]
          Length = 1445

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 181/946 (19%), Positives = 322/946 (34%), Gaps = 187/946 (19%)

Query: 57   EFSQKACAAG------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE-GY 109
              +Q A A G      +        + D+      +N           I +L    + G 
Sbjct: 570  RANQDAEATGYLMFKLLDAFNDKYQEDDLGKMNDYSNGEGYKRARPTHITVLAQNQKPGL 629

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            + L ELVS   +    K  +R   S L+ +   GL+  +  S G +  A      + A+K
Sbjct: 630  RNLYELVSLAGIKYNFKG-LRTPKSELRRLHA-GLLYGSACSQGEVFIAMMQKGYEEAKK 687

Query: 170  RLLTFK--KLFGDRLYVNLQRHR-----GYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
            +   +   ++     Y +L                + + +L      P+VAT+++ ++ +
Sbjct: 688  KAEFYDFLEIQPPSNYSSLIADGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDK 747

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
             +    DVL+A          +R +  PD +     EM+  FS + E +   V I+    
Sbjct: 748  HEAIYRDVLLAAQRG----NPNRNKQHPDLHFYTTQEMLDEFSFMGEDIAKEVVISNPNK 803

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                +   + P   E     I    E  +R                       + + RLD
Sbjct: 804  INAMIDEGVQPVQDESFPPKIPHTAER-VRKLTYDKAHELYGD------PLPDNIQARLD 856

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF-- 400
             EL+ I    +   +LI    +  + K+   VG  RGS   S+ A  + IT+I+P+    
Sbjct: 857  RELDAIIGNGYGVVYLISQMLVAKSVKDGYLVG-SRGSVGSSLVATMMGITEINPMPPHY 915

Query: 401  ---------------------------------------SLLFERFLNPDRMSMPDFDID 421
                                                   ++ FE FL      +PD D++
Sbjct: 916  RCPKCKQSEFFENGEYASGFDLPDKKCPDCQVMMVKDGQNIPFETFLGFHGDKVPDIDLN 975

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  D +     +++  +G     +  T G+L  K A+  V                    
Sbjct: 976  FSGDYQPVAHNFIRVMFGPNHSFKAGTVGTLADKKAIGYVKHYQDEHP------------ 1023

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPL 539
                              E ++ +  VDRL   +  + G+      H AGIV+   D+ +
Sbjct: 1024 ------------------EIKMNNAEVDRL---AIGVTGVKATTGQHPAGIVVLPDDKDI 1062

Query: 540  SQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
             +L P+         +   T F+   I    L+KFD LG +  T+++   D        +
Sbjct: 1063 YELTPLQYPSDDISKEWKTTHFDFHQIHD-NLLKFDILGHQDPTMIRMLQDL-----SGI 1116

Query: 597  DLSLIPFDDHETYHLLT--------------TKGTLGIFQLESSGMRQALEGMQPDCIED 642
            D   IP DD +   L +                GTLG+ +  +  +R  LE  +P    +
Sbjct: 1117 DPLTIPTDDPKVMSLFSSPEALGVTPEQINSKTGTLGLPEFGTPFVRGMLEETKPSTFAE 1176

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++ +  L     +          NG  K+ S+    D ++ +     + +E         
Sbjct: 1177 LLQISGLSHGTDVWLGNAEELINNGTCKLKSVIGCRDNIMTDLIRWGVKEE--------- 1227

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
               + S  + +R+  G    E M   KE          I      +  ++      Y F 
Sbjct: 1228 --VAFSTMETVRKGKGI-SDENMAVLKEN-------KNIPDWYIPSCLKI-----KYMFP 1272

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------------------- 800
            K+HAAAY +++ + AW K +YP  + AA  ++  D V+                      
Sbjct: 1273 KAHAAAYILMALRVAWFKVYYPEIYYAAYFSVRADKVDLEAMSRGKNTVVALINRIKEKG 1332

Query: 801  ----KIKK-------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGT 847
                K++K          +A +  I      +N      +K+ D         A+ G+G 
Sbjct: 1333 TAATKLEKDLQTYMELVNEAIERGINFKMVDINESEATTYKIVDKHTILAPFNAVDGLGD 1392

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE-SLVFAGALD 892
            + A+ I+ A ++ PF S ED   R    +      E + V  G  D
Sbjct: 1393 SAAKQIVAARSEAPFLSKEDLQVRGKVSQKIMDFFENNNVLEGMPD 1438



 Score = 83.5 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 6/111 (5%)

Query: 1   LTQYLEKSPSF------VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           LT+++ +  ++      V L VH++ S L+    + +I+       QPA+AITD   L +
Sbjct: 323 LTEHVSRQEAYQGEEKHVELHVHTNMSQLDATSDVADIIKTAKKFGQPAVAITDHAGLQA 382

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                +     G++ I+G + ++     L + N     +     ++  V T
Sbjct: 383 LPNAFEAGKKTGMKVIMGLEANMVEDHGLLVLNPASMKYEDQEFVIFDVET 433


>gi|149183493|ref|ZP_01861922.1| DNA polymerase III PolC [Bacillus sp. SG-1]
 gi|148848805|gb|EDL63026.1| DNA polymerase III PolC [Bacillus sp. SG-1]
          Length = 1375

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 165/880 (18%), Positives = 312/880 (35%), Gaps = 168/880 (19%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             L+  + A   GI         +   D  K +            + LL  T EG + L +
Sbjct: 581  LLKMLKDANEKGIIYHDQFNDYMGKGDAYKRSRPS--------HVTLLAQTEEGLKNLFK 632

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LV+  +L +   +  RI  S LQ+    G+++ +G   G +       + +  E+    +
Sbjct: 633  LVTISHL-EYFFRVPRIPRSLLQKY-RSGILVGSGCDKGEVFEGMMQKAPEEVEEAARFY 690

Query: 175  -------KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   K+++   + + L +           +VQL    +LP+VAT N  +++  D   
Sbjct: 691  DYLEVHPKEVYQHLIELELIQSDQNLEEIIGNIVQLGEKLDLPVVATGNVHYINPTDKVH 750

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFIL 285
             ++L+        +        PD + +  +EM+  FS L +  A E  V    + + ++
Sbjct: 751  REILVGSQGG---ANPLNRHKLPDVHFRTTNEMLDCFSFLGKEKAKEIVVTNTNKIADLI 807

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                PI       + +      + E+R  + A  +    +         +    RL+ EL
Sbjct: 808  DEIKPIKDDLYTPKIEGA----DEEMRRMSYAMAKSIYGEEL------PEIVEARLEKEL 857

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------ 399
              I    F+  +LI A  ++ +  +   VG  RGS   S  A    IT+++PL       
Sbjct: 858  KSIIGHGFAVIYLISAKLVKKSLSDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCP 916

Query: 400  -----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQ 424
                                                 + FE FL      +PD D++F  
Sbjct: 917  KCKHSEFFDDGSVGSGFDLPNKNCPECGNVFKKDGHDIPFETFLGFKGDKVPDIDLNFSG 976

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + + +   Y +  +G + V +  T G++  K A   V                       
Sbjct: 977  EYQPKAHDYTKVLFGEDNVYRAGTIGTVADKTAFGYV----------------------- 1013

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQL 542
                 +  A D+  +   +    VDRL   +Q   G+ R    H  GI++      +   
Sbjct: 1014 -----KGYASDNNLQ---IRGAEVDRL---AQGCTGVKRTTGQHPGGIIVVPDYMDIFDF 1062

Query: 543  VPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             P+     D  S+   T F+   I    L+K D LG    T+++   D        +D  
Sbjct: 1063 SPIQFPADDKNSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----SGIDPK 1116

Query: 600  LIPFDDHETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             IP DD E                 ++   GTLGI +  +  +RQ LE  +P    +++ 
Sbjct: 1117 TIPTDDPEVMKIFSGTESLGVTEEQIMCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQ 1176

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +  L     +          N +E I +    +  ++     +++Y   + Q  +    +
Sbjct: 1177 ISGLSHGTDVWLG-------NAQELIHNNICNLSEVIGCRDDIMVY--LIYQGLEPSLAF 1227

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
             + E     + +  + +EEM            KNG+      N +    K   Y F K+H
Sbjct: 1228 KIMEFVRKGKGLQPEWEEEM-----------MKNGVP-----NWYIDSCKKIKYMFPKAH 1271

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQI 816
            AAAY +++ + A+ K H+ + + +A  T+  ++ +          I+   +D     +  
Sbjct: 1272 AAAYVLMAVRIAYFKVHHALLYYSAYFTVRAEDFDIEAMVRGSQAIRAKIEDINSKGLDA 1331

Query: 817  MPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIME 855
             P   NT  V +  +      Y    +    ++    I++
Sbjct: 1332 SPKEKNTLTVLELALEMCERGYKFQKVDLYRSSATEFIID 1371



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 65/405 (16%), Positives = 135/405 (33%), Gaps = 51/405 (12%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+ N++ + +     A+AITD   + S  E    +   GI+ + 
Sbjct: 339 VELHLHTPMSQMDAVSSVANLVGQASKWGHKAVAITDHAVVQSFPEAYNASKKNGIKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G + ++         N           +V  V T      L  + + +  L   K     
Sbjct: 399 GLEANLVDDGIPIAYNDAHRNLEEDTYVVFDVETT----GLSAMYNTIIELAAVKIRDGE 454

Query: 132 CLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL------- 182
            +   +        L   T   +G I       + +VAE  L  FK   GD +       
Sbjct: 455 IIDRFESFANPHHPLSATTINLTG-ITDDMVEGAPEVAEA-LKAFKDWAGDAVLVAHNAS 512

Query: 183 ----YVNLQRHRG-------------------YDRYRESQVVQLAYTHELPLVATNNSLF 219
               ++N+   +                    Y   +  ++  LA   ++ L   + +++
Sbjct: 513 FDMGFLNVGYGKAGLDKAENPVIDTLELARLLYPEMKNHRLNTLAKKFDVELTQHHRAIY 572

Query: 220 -LSEEDYEAHDVLMAVAHSTV--VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
                 Y    +L       +    Q +      D Y ++R   V++ +   E L+N  +
Sbjct: 573 DAEATGYLLLKMLKDANEKGIIYHDQFNDYMGKGDAYKRSRPSHVTLLAQTEEGLKNLFK 632

Query: 277 IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG----- 331
           +            P +PR + ++            + +   G+  +  +           
Sbjct: 633 LVTISHLEYFFRVPRIPRSLLQKYRSGILVGSGCDKGEVFEGMMQKAPEEVEEAARFYDY 692

Query: 332 --YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
              H ++  Q L  EL +I   +      I+ + +Q  +K ++PV
Sbjct: 693 LEVHPKEVYQHLI-ELELIQSDQ--NLEEIIGNIVQLGEKLDLPV 734


>gi|170288275|ref|YP_001738513.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
 gi|170175778|gb|ACB08830.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
          Length = 842

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 211/713 (29%), Positives = 333/713 (46%), Gaps = 118/713 (16%)

Query: 260 MVSIF------SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
           M  +F         PE  E+  +I    ++ L+V      RF                  
Sbjct: 118 MRKVFGLDEDVQGFPEKCEDVADILNAEAYDLRV----NHRFPTPP-------------- 159

Query: 314 KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
               G    L + A   G   ++Y  RL  EL VI R  F+ Y   V   ++ AKK  I 
Sbjct: 160 ---KGWNESLIKKAEPLG---EEYISRLKRELEVIKRKGFTPYIYTVEKVVEIAKKMGIK 213

Query: 374 VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
           VGPGRGS  GS+ AY   IT++DP+++ LLFERFLN +R   PD D+D    RR ++I+ 
Sbjct: 214 VGPGRGSAVGSLVAYLCGITEVDPIKYDLLFERFLNEERQEPPDIDVDVEDRRRKDLIKE 273

Query: 434 VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
           +   +   +V Q+ TFG+L  K+                                     
Sbjct: 274 LSKSF---QVYQVSTFGNLTEKS------------------------------------- 293

Query: 494 DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                  + L D S++   EI + + GL  H S HAAG+VI + PL    P+   +  D+
Sbjct: 294 -LKNLINSVLPDASLEEKNEIYKTVYGLPHHPSVHAAGVVISENPL----PLPTRMEEDI 348

Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
           P+T ++M  +++ G++K D LGLKTL+ ++     +             + D +TYHL++
Sbjct: 349 PITDYDMYDLQEIGVVKIDILGLKTLSFIKDFKKEI-----------FDYSDEKTYHLIS 397

Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKEKI 671
              TLG+FQLE    R+    + P  ++++  L++L RPGP+ +   V+++N KN  E  
Sbjct: 398 KGKTLGVFQLEGLQARKLCRRISPRNMDELSILLALNRPGPLRSGLDVMFSNPKNVPE-- 455

Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
                       ET+GV+IYQEQ+M++A   +G S +EAD+LRRA+ KK +E+M+   E+
Sbjct: 456 -----FFRKTFPETRGVLIYQEQIMRLAM-FAGLSGTEADILRRAIAKKEREKMEPLLEK 509

Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
              G  + G+    A  I E+L  F+ Y FNKSH+ AYA I+YQTA++K H+  EF    
Sbjct: 510 MKKGLLEKGM--ENAEQILEILLNFSSYAFNKSHSVAYAHITYQTAYLKVHHLEEFFKLY 567

Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
                 + EKI    Q+ R    ++ PP +NT   +       +Y  L  +KGVG T   
Sbjct: 568 FAYNSSDTEKIFLAVQELRSEGYRVHPPDINTSGKELVFHGKDVYLPLTVVKGVGATLVE 627

Query: 852 HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I +     P +S+ +   RV    + R V+E+L+ AGA D    +R   L+ L+   + 
Sbjct: 628 QIEKIR---PINSVRELQERV--TGVPRNVVENLITAGAFDKLYENRKLALEELNKKVEK 682

Query: 912 AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
                +       ++F  +    S  + +   +        E E++ +GF  +
Sbjct: 683 DILEIR-------SLFGEKVEQESSTVKIGDIT--------ELEEKSMGFPLT 720



 Score = 40.0 bits (92), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 16 VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
          V S YS     +    +   + +    ++ + D  N  +A++F+      G+ P+ G  
Sbjct: 5  VISPYSFDGSVVRFEKLALLLKSKGLKSVILADR-NFHAAVKFNTIMRKHGLIPVHGLW 62


>gi|125625168|ref|YP_001033651.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493976|emb|CAL98973.1| DNA polymerase III alpha subunit [Lactococcus lactis subsp. cremoris
            MG1363]
 gi|300071977|gb|ADJ61377.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 1635

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 155/914 (16%), Positives = 327/914 (35%), Gaps = 162/914 (17%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+ ++          + L   T EG + L ++VS   +        R+  S L E  +
Sbjct: 770  NAKLVSEDSYKKVRPKHVTLYAKTQEGLKNLFKIVSFGNVK-YYAGLPRLPRSVL-EANS 827

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYD-----R 194
            EGL++ +    G +  A    + +   +    +   ++F   LY +L     +       
Sbjct: 828  EGLLVGSACEVGEVFDAAINKTFEETLEIAKFYDFIEVFPPALYRSLVVGGSFKSEKELE 887

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-------VAHSTVVSQKDRPR 247
                 ++++  T   P++AT N  +L+ ED    ++++        +  +    +  +P 
Sbjct: 888  QTLKDLIKIGKTLGKPVLATGNLHYLNPEDAIYREIIVRSLGLGAEINWTQGHGEHAKPL 947

Query: 248  VTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECD-DIQ 304
              P+ + +   EM+  FS L E  A E  ++  ++ +    V  P+       +   D  
Sbjct: 948  PLPEAHFRTTDEMLEAFSFLDEKTAREIVIDNTQKMADEFDVLTPVRDDLYTPKMVFDGG 1007

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +  E  +                            RL+ EL  I    FS  ++I  + +
Sbjct: 1008 ETSEERIVRLTYEKAHE------WYGNPLPDIIDARLEKELRSILGNGFSVVYIISQELV 1061

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL-------------------------- 398
            + + +    VG  RGS   S+ A  + IT+++PL                          
Sbjct: 1062 KRSNERGYIVG-SRGSVGSSLVATMIGITEVNPLAPHYRCPECQYFECYDDGSFGSGYDM 1120

Query: 399  ---------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                              + FE FL      +PD D++F  D +      V++ +G +  
Sbjct: 1121 PDKNCPKCDHKLIKDGHDIPFETFLGFKGDKVPDIDLNFSGDDQPLAHLDVRDIFGEDYA 1180

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
             +  T G++  K A   V +  +  Y Q                                
Sbjct: 1181 FRAGTIGTVAEKTAFGFV-KGYERDYDQ------------------------------FY 1209

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQF 558
             +  +DRL   +    G+ R    H  GI++      +    P+     DV ++   T F
Sbjct: 1210 GNAEIDRL---AAGSTGVKRTTGQHPGGIIVIPNYMDVYDFSPVQFPADDVNAEWQTTHF 1266

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
            +   I    ++K D LG    T+++K           +    IP DD     L T   +L
Sbjct: 1267 DFHAIHD-NILKLDILGHDDPTMIRKLQSL-----SGIVPQDIPMDDPGVMKLFTGTESL 1320

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPL 677
            G+ + E  G++    G+        + +++  +P    +++  +   +G +    +   L
Sbjct: 1321 GLTE-EQLGVKLGTLGIPEMGTFTSMNMIAEAKPKNFADLLQISGLSHGTDVWSGNAQDL 1379

Query: 678  IDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            I   + +   VI  ++ +M       L +G + +  + +R+ M  KI  E   ++E+++ 
Sbjct: 1380 IRSGIADLSSVIGCRDDIMVYLIHKGLENGLAFTIMERVRKGMWNKIPAE---EREKYVE 1436

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               ++ + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1437 AMREHEVPEWYIESCSKI-----KYMFPKAHAAAYIMMALRVAYFKVHHPIFYYCAWFSI 1491

Query: 795  EMDNVE---------KIKKFCQDARQFNIQIMPPSVN----------------------- 822
                 +          +K   ++ +    +      N                       
Sbjct: 1492 RATAFDIGVMGAGLEAVKAKMKEIKDKGFEATNVETNLYTTLELCNEMLERGFTFGKIDL 1551

Query: 823  --TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
              +   +F +  + +      + G+G   A+ I+ A A+  F S  +   R     +++ 
Sbjct: 1552 YRSEATEFVIDGDTLIPPFVTMDGLGENVAKQIVAARAEGEFLSKMELRKR---GGVSQT 1608

Query: 881  VLESLVFAGALDCF 894
            ++E++   G L+  
Sbjct: 1609 IIENMTNMGVLEGM 1622



 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   S ++++ + A     AIAITD   L S  E        G++ I 
Sbjct: 507 VEFHAHTNMSQMDAIPSASSLVAQAAKWGHKAIAITDHGGLQSFPEAHSAGKKNGVKIIY 566

Query: 72  GC 73
           G 
Sbjct: 567 GV 568


>gi|225572667|ref|ZP_03781422.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM
            10507]
 gi|225039967|gb|EEG50213.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM
            10507]
          Length = 1464

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 178/915 (19%), Positives = 316/915 (34%), Gaps = 184/915 (20%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
                ++L S+  G   L +LVS  +L     +  R+  S   E   EGLI+ +   +G +
Sbjct: 629  TYHAIILASSEAGRINLYKLVSLSHLK-YYNRRPRVPKSVF-EQHREGLIIGSACEAGEL 686

Query: 156  DRAFFFNSSQVAEKRL------LTFKKLFGDRLYV----NLQRHRGYD-RYRESQVVQLA 204
             +A   ++S     RL      L  + L  ++  +    N + H   D +    ++V+L 
Sbjct: 687  YQALLRDASPQEIARLVNFYDYLEIQPLGNNKFMIADEKNDKVHSMEDLKEMNRKIVKLG 746

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
               + P+VAT +  F+  +D     ++M+                   YL+   EM+  F
Sbjct: 747  EQFQKPVVATCDVHFMDPKDEVYRRIIMSGKGFGDADD------QAPLYLRTTEEMLEEF 800

Query: 265  SDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
            S L         + NT++IA  C  +  +H    P  IE    D        LR+     
Sbjct: 801  SYLGSEKAEEVVITNTLKIADMCDKVSPIHPDKCPPVIENSDQD--------LRDICYNK 852

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
                  +             +RL  EL  I    ++  ++I    +  +  +   VG  R
Sbjct: 853  AHEIYGEPL------PPIVEERLKKELTSIISNGYAVMYIIAQKLVWKSNDDGYLVG-SR 905

Query: 379  GSGAGSVTAYALTITDIDPLR--------------------------------------- 399
            GS   S+ A    IT+++PL                                        
Sbjct: 906  GSVGSSLAATMSGITEVNPLPPHYVCPKCKYSDFDSEDVKKFVGKVGCDMPDKVCPKCGT 965

Query: 400  ------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
                  F + FE FL       PD D++F  + +    RY +  +G     +  T G+L 
Sbjct: 966  KLNKNGFDIPFETFLGFKGDKEPDIDLNFSGEYQAVAHRYTEVIFGEGHTFKAGTIGTLA 1025

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             K A   V    +  + Q  R C                                  +  
Sbjct: 1026 EKTAFGYVKNYFE-EHGQPKRYC---------------------------------EINR 1051

Query: 514  ISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGL 568
            + +   G+ R    H  GI++      + +  P+     DV SD+  T F+   I+   L
Sbjct: 1052 LVKGCTGIRRTTGQHPGGIIVLPHGEEIEKFTPVQHPANDVNSDIITTHFDYHSID-GNL 1110

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            +K D LG    T+++   D         D   +P D+ E   L  +   LGI   +  G 
Sbjct: 1111 LKLDILGHDDPTMIRMLEDLTG-----TDAKEVPLDNPEVMSLFASTKALGIEPKDIGGC 1165

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQG 687
                 G+     + +I ++   +P    ++V  +   +G    + +   LI         
Sbjct: 1166 PLGCLGIPEFGTDFVIGMLQDTKPTCFSDLVRISGLSHGTNVWLGNAQELIRQGKATIST 1225

Query: 688  VIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
             I  ++ +M       + S  + +  + +R+  G K  E  +  K   +           
Sbjct: 1226 AICTRDDIMGYLINQGVESSQAFTIMESVRKGKGLK-PEWEETMKANHVP---------- 1274

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---- 800
               + +    K   Y F K+HAAAY +++Y+ AW K  YP+ + AA  ++   N      
Sbjct: 1275 ---DWYIWSCKQISYMFPKAHAAAYVMMAYRIAWYKIFYPLAYYAAFFSIRATNFSYEVM 1331

Query: 801  -----------------------------KIKKFCQDARQFNIQIMPPS-VNTPCVDFKV 830
                                         K  K  Q+      + MP          F++
Sbjct: 1332 CMGKEKLEYYMDEIHKKGDAATKKEQDMVKDMKIVQEMYARGFEFMPLDLYKAKAHRFQI 1391

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             D ++  SL AI+G+G   A  ++ A+ +  F S +DF  R    K    +++ +   G 
Sbjct: 1392 IDGKLMPSLDAIEGLGDKAADAVVAAANEGTFLSKDDFRIRTKVSKTVIDLMDDMHLFG- 1450

Query: 891  LDCFGYSRMQLLQSL 905
             D    ++M L+  +
Sbjct: 1451 -DIPNSNQMSLMDFI 1464



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           + L  H+  S ++G      ++ +        IAITD   + +  E   +
Sbjct: 351 IELHCHTKMSDMDGVTDAKELVKRAYEWGHKGIAITDHGVVQAFPEAFHE 400


>gi|116093619|gb|ABJ58772.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
            delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 1411

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 181/946 (19%), Positives = 322/946 (34%), Gaps = 187/946 (19%)

Query: 57   EFSQKACAAG------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE-GY 109
              +Q A A G      +        + D+      +N           I +L    + G 
Sbjct: 536  RANQDAEATGYLMFKLLDAFNDKYHEDDLGKMNDYSNGEGYKRARPTHITVLAQNQKPGL 595

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            + L ELVS   +    K  +R   S L+ +   GL+  +  S G +  A      + A+K
Sbjct: 596  RNLYELVSLAGIKYNFKG-LRTPKSELRRLHA-GLLYGSACSQGEVFIAMMQKGYEEAKK 653

Query: 170  RLLTFK--KLFGDRLYVNLQRHR-----GYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
            +   +   ++     Y +L                + + +L      P+VAT+++ ++ +
Sbjct: 654  KAEFYDFLEIQPPSNYSSLIADGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDK 713

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
             +    DVL+A          +R +  PD +     EM+  FS + E +   V I+    
Sbjct: 714  HEAIYRDVLLAAQRG----NPNRNKQHPDLHFYTTQEMLDEFSFMGEDIAKEVVISNPNK 769

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                +   + P   E     I    E  +R                       + + RLD
Sbjct: 770  INAMIDEGVQPVQDESFPPKIPHTAER-VRKLTYDKAHELYGD------PLPDNIQARLD 822

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF-- 400
             EL+ I    +   +LI    +  + K+   VG  RGS   S+ A  + IT+I+P+    
Sbjct: 823  RELDAIIGNGYGVVYLISQMLVAKSVKDGYLVG-SRGSVGSSLVATMMGITEINPMPPHY 881

Query: 401  ---------------------------------------SLLFERFLNPDRMSMPDFDID 421
                                                   ++ FE FL      +PD D++
Sbjct: 882  RCPKCKQSEFFENGEYASGFDLPDKKCPDCQVMMVKDGQNIPFETFLGFHGDKVPDIDLN 941

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  D +     +++  +G     +  T G+L  K A+  V                    
Sbjct: 942  FSGDYQPVAHNFIRVMFGPNHSFKAGTVGTLADKKAIGYVKHYQDEHP------------ 989

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPL 539
                              E ++ +  VDRL   +  + G+      H AGIV+   D+ +
Sbjct: 990  ------------------EIKMNNAEVDRL---AIGVTGVKATTGQHPAGIVVLPDDKDI 1028

Query: 540  SQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
             +L P+         +   T F+   I    L+KFD LG +  T+++   D        +
Sbjct: 1029 YELTPLQYPSDDISKEWKTTHFDFHQIHD-NLLKFDILGHQDPTMIRMLQDL-----SGI 1082

Query: 597  DLSLIPFDDHETYHLLT--------------TKGTLGIFQLESSGMRQALEGMQPDCIED 642
            D   IP DD +   L +                GTLG+ +  +  +R  LE  +P    +
Sbjct: 1083 DPLTIPTDDPKVMSLFSSPEALGVTPEQINSKTGTLGLPEFGTPFVRGMLEETKPSTFAE 1142

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++ +  L     +          NG  K+ S+    D ++ +     + +E         
Sbjct: 1143 LLQISGLSHGTDVWLGNAEELINNGTCKLKSVIGCRDNIMTDLIRWGVKEE--------- 1193

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
               + S  + +R+  G    E M   KE          I      +  ++      Y F 
Sbjct: 1194 --VAFSTMETVRKGKGI-SDENMAVLKEN-------KNIPDWYIPSCLKI-----KYMFP 1238

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------------------- 800
            K+HAAAY +++ + AW K +YP  + AA  ++  D V+                      
Sbjct: 1239 KAHAAAYILMALRVAWFKVYYPEIYYAAYFSVRADKVDLEAMSRGKNTVVALINRIKEKG 1298

Query: 801  ----KIKK-------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGT 847
                K++K          +A +  I      +N      +K+ D         A+ G+G 
Sbjct: 1299 TAATKLEKDLQTYMELVNEAIERGINFKMVDINESEATTYKIVDKHTILAPFNAVDGLGD 1358

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE-SLVFAGALD 892
            + A+ I+ A ++ PF S ED   R    +      E + V  G  D
Sbjct: 1359 SAAKQIVAARSEAPFLSKEDLQVRGKVSQKIMDFFENNNVLEGMPD 1404



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 1   LTQYLEKSPSF------VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           LT+++ +  ++      V L VH++ S L+    + +I+       Q A+AITD   L +
Sbjct: 289 LTEHVGRQEAYQGEEKHVELHVHTNMSQLDATSDVADIIKTAKKFGQQAVAITDHAGLQA 348

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                +     G++ I+G + ++     L + N     +     ++  V T
Sbjct: 349 LPNAFEAGKKTGMKVIMGLEANMVEDHGLLVLNPASMKYEDQEFVIFDVET 399


>gi|308068695|ref|YP_003870300.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681]
 gi|305857974|gb|ADM69762.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681]
          Length = 1438

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 167/919 (18%), Positives = 300/919 (32%), Gaps = 188/919 (20%)

Query: 81   DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG 140
            D L                 +      G + L +LVS  +  +  K+   I  S L E+ 
Sbjct: 594  DRLNDYVGKDLSTVRPFHCCIYALNPIGKKNLYKLVSMSHT-EYFKRVPCIPKSKLSEM- 651

Query: 141  TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-----KKLFGDRLYVNLQRHRGYDRY 195
             +GL++++G   G    A    S + AE+    +     + L      V  Q   G D  
Sbjct: 652  RDGLLIISGCEKGEFFEAVLNKSEEEAEEIAQFYDVLEIQPLTMYMHLVEKQLVSGPDAL 711

Query: 196  R--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +    +V ++    + P++AT N  +L   D    D+ +   H        +    PD +
Sbjct: 712  KTAIRKVCEIGRRLDKPVIATGNVHYLETRDKLYRDITI---HGITGFSPLKDIRKPDAH 768

Query: 254  LKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            L+   EM++ F  L E  A E  V+     +   +       +      D      + E+
Sbjct: 769  LRTTDEMLAEFEFLGEEKAYEVVVKNTSELADRFEELELFPDKLFTPLLDGA----DEEI 824

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            RN      +    +         +    RL+ EL  I +  FS  +LI    ++ + K+ 
Sbjct: 825  RNTCYETAKSIYGEEL------PEVVVARLEKELEPIIKYGFSANYLISERLVKKSNKDG 878

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLR-------------------------------- 399
              VG  RGS   SV A  L I++++PL                                 
Sbjct: 879  YLVG-SRGSVGSSVVATFLGISEVNPLPAHYICGNPDCRHSEWILDGSVPSGFDLPDKNC 937

Query: 400  -----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
                         + FE FL      +PD D++F  + +     Y +  +G + V +  T
Sbjct: 938  PNCGGKLKGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPVAHNYTKVLFGEKSVFRAGT 997

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
             G++  K A     +                                    EA       
Sbjct: 998  IGTVAEKTAFGFAKKY----------------------------------EEAHHKKWRG 1023

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWI 563
              L  ++    G+ R    H  GIV+      +  + P+     D  S+   T F+    
Sbjct: 1024 AELNRLASGCTGVKRSTGQHPGGIVVVPDYIEVEDITPVQYPADDTSSEWKTTHFDYHAF 1083

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG------- 616
            +   L+K D LG    T+++   D        VD + IP +D +   +  +         
Sbjct: 1084 DA-NLLKLDILGHDDPTMMRMLQDLTG-----VDPTTIPMNDPKVMSMFNSTEALGVTPQ 1137

Query: 617  -------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
                   T G+ ++ +  +RQ L   QP    D++ +  L     +              
Sbjct: 1138 QIRTPVATYGVPEMGTKFVRQMLVESQPSSFADLLQISGLSHGTGVWLG----------- 1186

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
               +   LI       + VI  ++ +M      +G     A  +  ++ K      +  +
Sbjct: 1187 ---NAQELIKNNTCNIKTVIGCRDDIMLFLIYKAGMDAGLAFKITESVRKGKGLSAEWIE 1243

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E          + K      +        Y F K+HAAAY + + +TA+ K ++P+E+ A
Sbjct: 1244 E----------MKKCKVPQWYIDSCLKIQYMFPKAHAAAYVISAVRTAYFKLYHPIEYYA 1293

Query: 790  ASMTLE---------MDNVEKIKKFCQDARQFNIQIMPPS-------------------- 820
               ++              + I +   +  Q   Q  P                      
Sbjct: 1294 TYFSVRAADFDIELCCQGYDAIARKIVEIEQLGFQAPPKEKGMLPILEMALEMTARGFSF 1353

Query: 821  -----VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                   +    FKV  + +     A++G+G   AR+I  +     F S+EDF  +    
Sbjct: 1354 KSIDLYRSEATRFKVDGDSLIPPFGALQGIGDNAARNIAASREQGEFLSVEDFQQK---S 1410

Query: 876  KLNRRVLESLVFAGALDCF 894
            K ++ ++E L   G     
Sbjct: 1411 KASKTIVEMLSQMGCFRGL 1429



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+  S ++   S++  +   A     AIA+TD   +    + ++ A   GI+ I 
Sbjct: 335 VEFHLHTKMSAMDAVASIDQYVKTAAKWGHKAIAVTDHGGVQCYPDAAKAAKKNGIKMIY 394


>gi|227534929|ref|ZP_03964978.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
            ATCC 25302]
 gi|227187685|gb|EEI67752.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
            ATCC 25302]
          Length = 1437

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 177/962 (18%), Positives = 320/962 (33%), Gaps = 217/962 (22%)

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            + A   G+  +      +   D  K               ++   T  G + L +LVS  
Sbjct: 576  EAAKMYGMTTLNQLNDRVGAGDAYKAARPS--------HAIVFAKTQAGLKNLFKLVSLS 627

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +     +  R+  S LQ++  EGL++ +  S+G +  A        A  +   +     
Sbjct: 628  NVK-YFYRVPRVPRSQLQKL-REGLLVGSACSNGEVFTAMMQKGEAEARAKASFYD---- 681

Query: 180  DRLYVNLQRHRGYDRYRESQVVQ--------------LAYTHELPLVATNNSLFLSEEDY 225
               Y+ +Q    Y    E+ +++              +    E P+VAT ++ +L + D 
Sbjct: 682  ---YLEVQPLPVYQPLIEAGLIKGEAHLKDIIQKIIKIGSELEKPVVATGDAHYLDQHDA 738

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIAR 279
                +L+        +        PD + ++ SEM++ FS L E       ++N+  IA 
Sbjct: 739  IYRQILIHSQGG---ANPLNRHSLPDVHFRSTSEMLTDFSWLGEEKAHELVVDNSNLIAN 795

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
                 +    P+  +    E   +    E  L++  +                      Q
Sbjct: 796  WVDDDI---TPVKDKLYTPEVPGV----EENLKHDVMTTAHELYGDPL------PDIVAQ 842

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RLD EL  I    FS  + I    +  + K+   VG  RGS   S+ A    IT+++PL 
Sbjct: 843  RLDKELKSIIGNGFSVIYNIAQRLVLKSNKDGYLVG-SRGSVGSSLAATMAGITEVNPLP 901

Query: 400  -----------------------------------------FSLLFERFLNPDRMSMPDF 418
                                                       + FE FL      +PD 
Sbjct: 902  PHYRCPNCQYSEFFTHGEIGSGFDLPDKQCPKCGADLHKDGHDIPFETFLGFHGDKVPDI 961

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  D +     Y++  +G +   +  T G++  K A   V +A +    Q       
Sbjct: 962  DLNFSGDYQPIAHNYIKVMFGEDHSFRAGTIGTVADKTAYGYV-KAYERDTGQ------- 1013

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GD 536
                              + R A      +DRL   +Q   G+ R    H AGI+I   D
Sbjct: 1014 ------------------QLRGA-----EIDRL---AQGDTGVKRTTGQHPAGILIVPAD 1047

Query: 537  RPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
              +    P+             T F+   I    ++K D LG    T+++   D      
Sbjct: 1048 MDIYDFTPIQYPADDQNAAWMTTHFDFHSIHD-NILKMDVLGHDDPTMIRMLQDL----- 1101

Query: 594  VKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDC 639
              V+   IP DD     L +                GTLGI +  +  +R  LE  +P  
Sbjct: 1102 SGVEPKSIPTDDPGVMALFSGTKSLGVTPEQINSKMGTLGIPEFGTRFVRGMLEETKPTT 1161

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
              +++ +  L     +                 +   LI   +   + VI  ++ +M + 
Sbjct: 1162 FSELLQISGLSHGTDVWLG--------------NAEELIKQGIVTLKEVIGCRDNIM-MD 1206

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
             +  G   S A  +   + K      D QK                  + +        Y
Sbjct: 1207 LIHWGMEDSMAFNIMEHVRKGRGIPDDWQKAMR---------ENENVPDWYIESCLKIKY 1257

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------- 800
             F K+HA AY +++ + AW K HYP+ +  A  ++  ++ +                   
Sbjct: 1258 MFPKAHATAYILMALRIAWFKVHYPLIYYTAYFSVRAEDFDLAAMSHGKEAVKAAMKEIT 1317

Query: 801  --------------KIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIYYSLAAIKG 844
                           + +   +  +   +I    V        +   D+ I     A+ G
Sbjct: 1318 DKGMDASTKEKQLLTVLEIANECLERGFKIKMIDVTKSDSHNFLIQDDHTILAPFRAVPG 1377

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ 903
            +G   A+ I+ A  +KPF S ED  +R    K+++ +++ +     LD     +++ L  
Sbjct: 1378 LGDNVAKQIVAAREEKPFLSKEDLANR---GKVSKTLIDYMTTNHVLDDLPDENQLSLFD 1434

Query: 904  SL 905
             L
Sbjct: 1435 GL 1436



 Score = 78.9 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++    +++ + +       AIA+TD   L +  E    A  AG++ + 
Sbjct: 327 VELHLHTNMSQMDAMNPISDYVKRAKEWGHKAIAVTDHAGLQAYPEAHSAAVKAGLKMLY 386

Query: 72  GCQLDIDMQDNLKMTNQGKTPFP 94
           G ++++ + D   +  +   P  
Sbjct: 387 GVEINL-VDDGTPVAYRADEPRD 408


>gi|229552421|ref|ZP_04441146.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|229314158|gb|EEN80131.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
          Length = 1437

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 173/933 (18%), Positives = 315/933 (33%), Gaps = 195/933 (20%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++              ++   T  G + L +LVS   +     +  R+  S LQ++  
Sbjct: 590  NDRVGAGEAYKAARPSHAIVFAKTQAGLKNLFKLVSLSNVK-YFYRVPRVPRSQLQKL-R 647

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDR 194
            EGL++ +  SSG +  A        A  +   +         ++   L  +L +   + +
Sbjct: 648  EGLLVGSACSSGEVFTAMMQKGEAEARAKAAFYDYLEIQPPAVYQPLLEADLIKGESHLK 707

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                ++V++    E P+V T +  +L + D     +L+        +        PD + 
Sbjct: 708  DILQKIVKIGDDLEKPVVVTGDVHYLDQHDAIYRKILIHSQGG---ANPLNRHSLPDVHF 764

Query: 255  KNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            ++  EM+  FS L         + N+  IA      +    P+  +    E   +    E
Sbjct: 765  RSTREMLDDFSWLGAEKAQKLVVTNSNLIADLIDDDI---TPVKDKLYTPEVPGV----E 817

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             +L++  +A                 +   QRLD EL  I    FS  + I    +  + 
Sbjct: 818  EKLKHDVMATAYELYGNPL------PEIVAQRLDKELKSIIGNGFSVIYNIAQRLVLKSN 871

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------------- 399
            K+   VG  RGS   S+ A    IT+++PL                              
Sbjct: 872  KDGYLVG-SRGSVGSSLAATMAEITEVNPLPPHYRCPKCQYSEFFTHGEVGSGFDLPDKT 930

Query: 400  ------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                          + FE FL      +PD D++F  D +     Y++  +G +   +  
Sbjct: 931  CPKCGTELHKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQPVAHNYIKVMFGEDHSFRAG 990

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G++  K A   V +A +    Q                         + R A      
Sbjct: 991  TIGTVADKTAYGYV-KAYERDTGQ-------------------------QLRGA-----E 1019

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRSD---LPVTQFNMKW 562
            +DRL   +Q   G+ R    H AGI+I   D  +    P+             T F+   
Sbjct: 1020 IDRL---AQGDTGVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTTHFDFHS 1076

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK------- 615
            I    ++K D LG    T+++   D        V+   IP DD     L +         
Sbjct: 1077 IHD-NILKMDVLGHDDPTMIRMLQDL-----SGVEPKSIPTDDPGVMALFSGTESLGVTP 1130

Query: 616  -------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
                   GTLGI +  +  +R  LE  +P    +++ +  L     +             
Sbjct: 1131 EQINSKMGTLGIPEFGTRFVRGMLEETKPTTFSELLQISGLSHGTDVWLG---------- 1180

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
                +   LI   +   + VI  ++ +M +  +  G   S A  +   + K      D Q
Sbjct: 1181 ----NAEELIKQGIVTLKEVIGCRDNIM-MDLIHWGMDDSMAFNIMEHVRKGRGIPDDWQ 1235

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K                  + +        Y F K+HA AY +++ + AW K HYP+ + 
Sbjct: 1236 KAMR---------ENENVPDWYIDSCLKIKYMFPKAHATAYILMALRIAWFKVHYPLVYY 1286

Query: 789  AASMTLEMDNVE---------------------------------KIKKFCQDARQFNIQ 815
             A  ++  ++ +                                  + +   +  +   +
Sbjct: 1287 TAYFSVRAEDFDLAAMSHGKEAVKAAMKEITDKGMDASAKEKQLLTVLEIANECLERGFK 1346

Query: 816  IMPPSVNTPC-VDFKVGDNRIYY-SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
            I    V      DF + D+        A+ G+G   A+ I+ A  +KPF S ED  +R  
Sbjct: 1347 IKMIDVTKSDSHDFLIQDDHTILAPFRAVPGLGDNVAKQIVAAREEKPFLSKEDLANR-- 1404

Query: 874  SKKLNRRVLESLVFAGALDCF-GYSRMQLLQSL 905
              K+++ +++ +     LD     +++ L   L
Sbjct: 1405 -GKVSKTLIDYMTTNHVLDDLPDENQLSLFDGL 1436



 Score = 75.0 bits (183), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   S+ + +++  A    AIA+TD   L +  E    A  AG++ + 
Sbjct: 327 VELHLHTNMSQMDATNSITDFVNRAKAWGHKAIAVTDHAGLQAYPEAHTAADKAGLKMLY 386

Query: 72  GC 73
           G 
Sbjct: 387 GV 388


>gi|258539791|ref|YP_003174290.1| DNA polymerase III PolC [Lactobacillus rhamnosus Lc 705]
 gi|257151467|emb|CAR90439.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus Lc 705]
          Length = 1444

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 173/933 (18%), Positives = 315/933 (33%), Gaps = 195/933 (20%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++              ++   T  G + L +LVS   +     +  R+  S LQ++  
Sbjct: 597  NDRVGAGEAYKAARPSHAIVFAKTQAGLKNLFKLVSLSNVK-YFYRVPRVPRSQLQKL-R 654

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDR 194
            EGL++ +  SSG +  A        A  +   +         ++   L  +L +   + +
Sbjct: 655  EGLLVGSACSSGEVFTAMMQKGEAEARAKAAFYDYLEIQPPAVYQPLLEADLIKGESHLK 714

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                ++V++    E P+V T +  +L + D     +L+        +        PD + 
Sbjct: 715  DILQKIVKIGDDLEKPVVVTGDVHYLDQHDAIYRKILIHSQGG---ANPLNRHSLPDVHF 771

Query: 255  KNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            ++  EM+  FS L         + N+  IA      +    P+  +    E   +    E
Sbjct: 772  RSTREMLDDFSWLGAEKAQKLVVTNSNLIADLIDDDI---TPVKDKLYTPEVPGV----E 824

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             +L++  +A                 +   QRLD EL  I    FS  + I    +  + 
Sbjct: 825  EKLKHDVMATAYELYGNPL------PEIVAQRLDKELKSIIGNGFSVIYNIAQRLVLKSN 878

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------------- 399
            K+   VG  RGS   S+ A    IT+++PL                              
Sbjct: 879  KDGYLVG-SRGSVGSSLAATMAEITEVNPLPPHYRCPKCQYSEFFTHGEVGSGFDLPDKT 937

Query: 400  ------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                          + FE FL      +PD D++F  D +     Y++  +G +   +  
Sbjct: 938  CPKCGTELHKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQPVAHNYIKVMFGEDHSFRAG 997

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G++  K A   V +A +    Q                         + R A      
Sbjct: 998  TIGTVADKTAYGYV-KAYERDTGQ-------------------------QLRGA-----E 1026

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRSD---LPVTQFNMKW 562
            +DRL   +Q   G+ R    H AGI+I   D  +    P+             T F+   
Sbjct: 1027 IDRL---AQGDTGVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTTHFDFHS 1083

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK------- 615
            I    ++K D LG    T+++   D        V+   IP DD     L +         
Sbjct: 1084 IHD-NILKMDVLGHDDPTMIRMLQDL-----SGVEPKSIPTDDPGVMALFSGTESLGVTP 1137

Query: 616  -------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
                   GTLGI +  +  +R  LE  +P    +++ +  L     +             
Sbjct: 1138 EQINSKMGTLGIPEFGTRFVRGMLEETKPTTFSELLQISGLSHGTDVWLG---------- 1187

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
                +   LI   +   + VI  ++ +M +  +  G   S A  +   + K      D Q
Sbjct: 1188 ----NAEELIKQGIVTLKEVIGCRDNIM-MDLIHWGMDDSMAFNIMEHVRKGRGIPDDWQ 1242

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K                  + +        Y F K+HA AY +++ + AW K HYP+ + 
Sbjct: 1243 KAMR---------ENENVPDWYIDSCLKIKYMFPKAHATAYILMALRIAWFKVHYPLVYY 1293

Query: 789  AASMTLEMDNVE---------------------------------KIKKFCQDARQFNIQ 815
             A  ++  ++ +                                  + +   +  +   +
Sbjct: 1294 TAYFSVRAEDFDLAAMSHGKEAVKAAMKEITDKGMDASAKEKQLLTVLEIANECLERGFK 1353

Query: 816  IMPPSVNTPC-VDFKVGDNRIYY-SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
            I    V      DF + D+        A+ G+G   A+ I+ A  +KPF S ED  +R  
Sbjct: 1354 IKMIDVTKSDSHDFLIQDDHTILAPFRAVPGLGDNVAKQIVAAREEKPFLSKEDLANR-- 1411

Query: 874  SKKLNRRVLESLVFAGALDCF-GYSRMQLLQSL 905
              K+++ +++ +     LD     +++ L   L
Sbjct: 1412 -GKVSKTLIDYMTTNHVLDDLPDENQLSLFDGL 1443



 Score = 75.0 bits (183), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   S+ + +++  A    AIA+TD   L +  E    A  AG++ + 
Sbjct: 334 VELHLHTNMSQMDATNSITDFVNRAKAWGHKAIAVTDHAGLQAYPEAHTAADKAGLKMLY 393

Query: 72  GC 73
           G 
Sbjct: 394 GV 395


>gi|323650995|ref|YP_004243638.1| putative DNA polymerase [Bacillus subtilis subsp. natto]
 gi|323461635|dbj|BAJ77051.1| putative DNA polymerase [Bacillus subtilis subsp. natto]
          Length = 1280

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 197/983 (20%), Positives = 395/983 (40%), Gaps = 92/983 (9%)

Query: 3   QYLEKSPSFVHLQV-HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           +  +K P   H     S++ L +       ++D         + ITD   L S ++  + 
Sbjct: 13  EKYKKKPFLTHSHTDASNFRLRDAINKPEELIDYCHEIGLSGVVITDHETLSSHVKAHKY 72

Query: 62  ACAAGIQ----PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
                 +     +        +     M  +      +    +L+  + +GY+ L +L S
Sbjct: 73  VEENKERLGDFKLGFGNEIYLVDKADTMEKKSLNQKISFHHFILIAKSQKGYEGLKKLSS 132

Query: 118 RMYLLDQGKQSVRICLSW------LQEIGTEGLIMLTGGSSGPIDRAFFF-------NSS 164
           + +      + +    ++      L +     +I  T    G + ++           + 
Sbjct: 133 KAWYNSFFYRGMERVPTYKDELMSLMQEYQGEIIACTACVGGELPQSLIAYHDDPTPENK 192

Query: 165 QVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEE 223
           +     ++  K +FG+ LY  LQ  +  D+      +++++  + +  + + ++ +L+++
Sbjct: 193 KRVHDLIVWLKGVFGEDLYFELQPSKNRDQLVANEMMLKVSEAYNVKCIVSTDAHYLNKK 252

Query: 224 DYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARR- 280
              AH + +  +      +++        Y+    E++  F +  L   ++NT EI  + 
Sbjct: 253 YAPAHKIYLTASEG----EREVDEFYATTYVMGYEELLEYFDEELLDVLVDNTNEIRSKL 308

Query: 281 --CSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEV-RLAQGAIA------ 329
              +F  +   P   +P++   +       E   +R  A +  ++ R     IA      
Sbjct: 309 GSITFAQETKVPKAHIPKYEMNQLFVPHYMEYQYIRKYAESRYDIDRYYLHLIAEGMVAK 368

Query: 330 KGYHAQDYRQRLDFELN----VIARMK--FSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
           K    ++   R++ EL+    +  ++    S YF++  D +    + +  VG  RGS   
Sbjct: 369 KQELNKENLSRINTELDELYHITEKLGQPLSSYFVLSKDVVDLMWQVS-LVGVSRGSACC 427

Query: 384 SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
               Y L I  ++P++F+L   RFL+ +R  +PD D+D    +R E+I+  +  YG E V
Sbjct: 428 FYLNYLLDIVQLNPMKFNLPHWRFLSKERPELPDIDLDSEGSKRHEIIQITKEHYGEENV 487

Query: 444 AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI------ADDSR 497
             + TF +   ++ +    R L +       +  LIP       SL              
Sbjct: 488 LNMGTFTTEGTRSTVLTSCRGLGIDKDIAHNIANLIPTRKGGIWSLHECFYGNPKEGTKP 547

Query: 498 FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
            +E        + L E    +EGL      HA+G++I      +   M +   S LP+TQ
Sbjct: 548 AKEFCREVEKYEGLKEAMLSIEGLISGRGQHASGVIIFPDGYIKQNAMMK-TTSGLPITQ 606

Query: 558 FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-------------GVKVDLSLIPFD 604
           F+ +     G +K D+L +  L  ++ +LD L +                     ++  +
Sbjct: 607 FDAEDSIYMGGLKLDYLSINALDRIRTALDLLLEHGKIEWQGSLRATYNKYFHPDVLEME 666

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR-----PGPIDNIV 659
             + + LL     L  FQ E++  +QAL  + P   +++ A  SL R       P+D  V
Sbjct: 667 SPKMFDLLFEGHVLNAFQFETAVGQQALTKINPRSFDELCAGNSLMRLSTDGEQPLDKYV 726

Query: 660 VY-NNRKNGKEKIVSI------HPLIDPMLKETQGVIIYQEQVMQIAQL--LSGYSLSEA 710
            + NN ++  E++ +         +++  L +  G+   QE +M +A    ++G+SL++A
Sbjct: 727 RFKNNIQDWYEEMKTAGLNEEEIKILEEHLLDRYGICDTQEGLMLLAMDERIAGFSLTQA 786

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF-ELLAKFADYGFNKSHAAAY 769
           +  R+A+ K  ++ ++ Q+ +F  G  K G  K     ++ + L     Y F+  H A Y
Sbjct: 787 NKFRKAVAKANQKLIEDQRIKFYEGGEKTGARKVFLDYVWNKELKPQFGYSFSLPHIAGY 846

Query: 770 AVISYQTAWMKTHYPVEFL-AASMTLEMDN---VEKIKKFCQDAR---QFNIQIMPPSVN 822
            +I      +   Y   +   A +++        EK  K+   A+        I+ P +N
Sbjct: 847 TMILMIEMNICHRYGAIYWKTACLSVNAGMIGETEKGTKYGAIAKAVGDMKGDILNPDIN 906

Query: 823 TPCVDFKV--GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR-VDSKKLNR 879
               +F     +N+I + L  I G+GT     I+E     P+ S  DF  + VD   ++ 
Sbjct: 907 LSNKEFTPLEEENKILFGLKPIAGLGTDAIEKIIEHR---PYKSFGDFFKKIVDPGLISE 963

Query: 880 RVLESLVFAGALDCFGYSRMQLL 902
             + SL+ AG  D F  +R  L+
Sbjct: 964 AKVVSLIKAGCFDSFYPNRRLLM 986


>gi|104774216|ref|YP_619196.1| DNA polymerase III, alpha subunit ( type) (PolC) [Lactobacillus
            delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103423297|emb|CAI98138.1| DNA polymerase III, alpha subunit (gram-positive type) (PolC)
            [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 1411

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 180/946 (19%), Positives = 322/946 (34%), Gaps = 187/946 (19%)

Query: 57   EFSQKACAAG------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE-GY 109
              +Q A A G      +        + D+      +N           I +L    + G 
Sbjct: 536  RANQDAEATGYLMFKLLDAFNDKYQEDDLGKMNDYSNGEGYKRARPTHITVLAQNQKPGL 595

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            + L ELVS   +    K  +R   S L+ +   GL+  +  S G +  A      + A+K
Sbjct: 596  RNLYELVSLAGIKYNFKG-LRTPKSELRRLHA-GLLYGSACSQGEVFIAMMQKGYEEAKK 653

Query: 170  RLLTFK--KLFGDRLYVNLQRHR-----GYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
            +   +   ++     Y +L                + + +L      P+VAT+++ ++ +
Sbjct: 654  KAEFYDFLEIQPPSNYSSLIADGLIADEAQLEEILTNIYKLGRELNKPVVATSDAHYIDK 713

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
             +    DVL+A          +R +  PD +     EM+  FS + E +   V I+    
Sbjct: 714  HEAIYRDVLLAAQRG----NPNRNKQHPDLHFYTTQEMLDEFSFMGEDIAKEVVISNPNK 769

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                +   + P   E     I    E  +R                       + + RLD
Sbjct: 770  INAMIDEGVQPVQDESFPPKIPHTAER-VRKLTYDKAHELYGD------PLPDNIQARLD 822

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF-- 400
             EL+ I    +   +LI    +  + K+   VG  RGS   S+ A  + IT+I+P+    
Sbjct: 823  RELDAIIGNGYGVVYLISQMLVAKSVKDGYLVG-SRGSVGSSLVATMMGITEINPMPPHY 881

Query: 401  ---------------------------------------SLLFERFLNPDRMSMPDFDID 421
                                                   ++ FE FL      +PD D++
Sbjct: 882  RCPKCKQSEFFENGEYASGFDLPDKKCPDCQVMMVKDGQNIPFETFLGFHGDKVPDIDLN 941

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  D +     +++  +G     +  T G+L  K A+  V                    
Sbjct: 942  FSGDYQPVAHNFIRVMFGPNHSFKAGTVGTLADKKAIGYVKHYQDEHP------------ 989

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPL 539
                              E ++ +  VDRL   +  + G+      H AGIV+   D+ +
Sbjct: 990  ------------------EIKMNNAEVDRL---AIGVTGVKATTGQHPAGIVVLPDDKDI 1028

Query: 540  SQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
             +L P+         +   T F+   I    L+KFD LG +  T+++   D        +
Sbjct: 1029 YELTPLQYPSDDISKEWKTTHFDFHQIHD-NLLKFDILGHQDPTMIRMLQDL-----SGI 1082

Query: 597  DLSLIPFDDHETYHLLT--------------TKGTLGIFQLESSGMRQALEGMQPDCIED 642
            D   IP DD +   L +                GTLG+ +  +  +R  LE  +P    +
Sbjct: 1083 DPLTIPTDDPKVMSLFSSPEALGVTPEQINSKTGTLGLPEFGTPFVRGMLEETKPSTFAE 1142

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++ +  L     +          NG  K+ ++    D ++ +     + +E         
Sbjct: 1143 LLQISGLSHGTDVWLGNAEELINNGTCKLKNVIGCRDNIMTDLIRWGVKEE--------- 1193

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
               + S  + +R+  G    E M   KE          I      +  ++      Y F 
Sbjct: 1194 --VAFSTMETVRKGKGI-SDENMAVLKEN-------KNIPDWYIPSCLKI-----KYMFP 1238

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------------------- 800
            K+HAAAY +++ + AW K +YP  + AA  ++  D V+                      
Sbjct: 1239 KAHAAAYILMALRVAWFKVYYPEIYYAAYFSVRADKVDLEAMSRGKNTVVALINRIKEKG 1298

Query: 801  ----KIKK-------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGT 847
                K++K          +A +  I      +N      +K+ D         A+ G+G 
Sbjct: 1299 TAATKLEKDLQTYMELVNEAIERGINFKMVDINESEATTYKIVDKHTILAPFNAVDGLGD 1358

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE-SLVFAGALD 892
            + A+ I+ A ++ PF S ED   R    +      E + V  G  D
Sbjct: 1359 SAAKQIVAARSEAPFLSKEDLQVRGKVSQKIMDFFENNNVLEGMPD 1404



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 6/111 (5%)

Query: 1   LTQYLEKSPSF------VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           LT+++ +  ++      V L VH++ S L+    + +I+       QPA+AITD   L +
Sbjct: 289 LTEHVGRQEAYQGEEKHVELHVHTNMSQLDATSDVADIIKTAKKFGQPAVAITDHAGLQA 348

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                +     G++ I+G + ++     L + N     +     ++  V T
Sbjct: 349 LPNAFEAGKKTGMKVIMGLEANMVEDHGLLVLNPASMKYEDQEFVIFDVET 399


>gi|116495060|ref|YP_806794.1| DNA polymerase III PolC [Lactobacillus casei ATCC 334]
 gi|122263523|sp|Q038M0|DPO3_LACC3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116105210|gb|ABJ70352.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus casei
            ATCC 334]
          Length = 1444

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 177/962 (18%), Positives = 320/962 (33%), Gaps = 217/962 (22%)

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            + A   G+  +      +   D  K               ++   T  G + L +LVS  
Sbjct: 583  EAAKMYGMTTLNQLNDRVGAGDAYKAARPS--------HAIVFAKTQAGLKNLFKLVSLS 634

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +     +  R+  S LQ++  EGL++ +  S+G +  A        A  +   +     
Sbjct: 635  NVK-YFYRVPRVPRSQLQKL-REGLLVGSACSNGEVFTAMMQKGEAEARAKASFYD---- 688

Query: 180  DRLYVNLQRHRGYDRYRESQVVQ--------------LAYTHELPLVATNNSLFLSEEDY 225
               Y+ +Q    Y    E+ +++              +    E P+VAT ++ +L + D 
Sbjct: 689  ---YLEVQPLPVYQPLIEAGLIKGEAHLKDIIQKIIKIGSELEKPVVATGDAHYLDQHDA 745

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIAR 279
                +L+        +        PD + ++ SEM++ FS L E       ++N+  IA 
Sbjct: 746  IYRQILIHSQGG---ANPLNRHSLPDVHFRSTSEMLTDFSWLGEEKAHELVVDNSNLIAN 802

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
                 +    P+  +    E   +    E  L++  +                      Q
Sbjct: 803  WVDDDI---TPVKDKLYTPEVPGV----EENLKHDVMTTAHELYGDPL------PDIVAQ 849

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RLD EL  I    FS  + I    +  + K+   VG  RGS   S+ A    IT+++PL 
Sbjct: 850  RLDKELKSIIGNGFSVIYNIAQRLVLKSNKDGYLVG-SRGSVGSSLAATMAGITEVNPLP 908

Query: 400  -----------------------------------------FSLLFERFLNPDRMSMPDF 418
                                                       + FE FL      +PD 
Sbjct: 909  PHYRCPNCQYSEFFTHGEIGSGFDLPDKQCPKCGADLHKDGHDIPFETFLGFHGDKVPDI 968

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  D +     Y++  +G +   +  T G++  K A   V +A +    Q       
Sbjct: 969  DLNFSGDYQPIAHNYIKVMFGEDHSFRAGTIGTVADKTAYGYV-KAYERDTGQ------- 1020

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GD 536
                              + R A      +DRL   +Q   G+ R    H AGI+I   D
Sbjct: 1021 ------------------QLRGA-----EIDRL---AQGDTGVKRTTGQHPAGILIVPAD 1054

Query: 537  RPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
              +    P+             T F+   I    ++K D LG    T+++   D      
Sbjct: 1055 MDIYDFTPIQYPADDQNAAWMTTHFDFHSIHD-NILKMDVLGHDDPTMIRMLQDL----- 1108

Query: 594  VKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDC 639
              V+   IP DD     L +                GTLGI +  +  +R  LE  +P  
Sbjct: 1109 SGVEPKSIPTDDPGVMALFSGTKSLGVTPEQINSKMGTLGIPEFGTRFVRGMLEETKPTT 1168

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
              +++ +  L     +                 +   LI   +   + VI  ++ +M + 
Sbjct: 1169 FSELLQISGLSHGTDVWLG--------------NAEELIKQGIVTLKEVIGCRDNIM-MD 1213

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
             +  G   S A  +   + K      D QK                  + +        Y
Sbjct: 1214 LIHWGMEDSMAFNIMEHVRKGRGIPDDWQKAMR---------ENENVPDWYIESCLKIKY 1264

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------- 800
             F K+HA AY +++ + AW K HYP+ +  A  ++  ++ +                   
Sbjct: 1265 MFPKAHATAYILMALRIAWFKVHYPLIYYTAYFSVRAEDFDLAAMSHGKEAVKAAMKEIT 1324

Query: 801  --------------KIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIYYSLAAIKG 844
                           + +   +  +   +I    V        +   D+ I     A+ G
Sbjct: 1325 DKGMDASTKEKQLLTVLEIANECLERGFKIKMIDVTKSDSHNFLIQDDHTILAPFRAVPG 1384

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ 903
            +G   A+ I+ A  +KPF S ED  +R    K+++ +++ +     LD     +++ L  
Sbjct: 1385 LGDNVAKQIVAAREEKPFLSKEDLANR---GKVSKTLIDYMTTNHVLDDLPDENQLSLFD 1441

Query: 904  SL 905
             L
Sbjct: 1442 GL 1443



 Score = 78.9 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++    +++ + +       AIA+TD   L +  E    A  AG++ + 
Sbjct: 334 VELHLHTNMSQMDAMNPISDYVKRAKEWGHKAIAVTDHAGLQAYPEAHSAAVKAGLKMLY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFP 94
           G ++++ + D   +  +   P  
Sbjct: 394 GVEINL-VDDGTPVAYRADEPRD 415


>gi|291545334|emb|CBL18442.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp.
            SR1/5]
          Length = 1129

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 167/937 (17%), Positives = 318/937 (33%), Gaps = 183/937 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            + F +      I        D+D  +     +            ++      G   L +L
Sbjct: 258  VRFVKMLEERDI-------FDVDEMNRQGAVSPDTIRKLPTYHAIVFARNETGRINLYKL 310

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL---- 171
            VS+ +L     +  R+  S L++   EGL++ +   +G + +A   N+      RL    
Sbjct: 311  VSQSHLK-YYHRRPRVPKSVLEKY-REGLLVGSACEAGELYQALLRNAPDQEIARLVNFY 368

Query: 172  --LTFKKLFGDRLYVNLQRHRGYD-----RYRESQVVQLAYTHELPLVATNNSLFLSEED 224
              L  + L  +   +  ++H   +     +    ++V+L    + P+VAT +  F+  +D
Sbjct: 369  DYLEIQPLGNNAFMLADEKHDMINSEEDLKEINRKIVKLGEQFKKPVVATCDVHFMDPQD 428

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCS 282
                 ++MA       S  D        YL+   EM+  FS L   +A E  +    + +
Sbjct: 429  EVYRRIIMA---GNGFSDADN---QAPLYLRTTEEMLEEFSYLGSEKAEEVVITNTNKIA 482

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
             +++  +PI P         + +  E +L+N                     +    RLD
Sbjct: 483  DMIEKISPIHPDKFPP----VIENSEQDLKNICFTKAHEMYGDPL------PKIVEDRLD 532

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             ELN I    ++  ++I    +  + ++   VG  RGS   S+ A    IT+++PL    
Sbjct: 533  RELNSIISNGYAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSLAATMSGITEVNPLPPHY 591

Query: 400  --------------------------------------------FSLLFERFLNPDRMSM 415
                                                        F + FE FL       
Sbjct: 592  LCPNPDCKYSDFDSPEVKKYAGMAGCDMPDKICPKCGARMNKEGFDIPFETFLGFKGDKE 651

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  + +    RY +  +G  +  +  T G+L  K A   V              
Sbjct: 652  PDIDLNFSGEYQANAHRYTEVIFGKGQTFKAGTIGTLAEKTAFGYVKNYY---------- 701

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                    E R        +  I +   G+ R    H  GI++ 
Sbjct: 702  ------------------------EERGQHKRYCEINRIVKGCTGVRRTTGQHPGGIIVL 737

Query: 536  D--RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 + +  P+     DV SD+  T F+   I+   L+K D LG    T+++   D   
Sbjct: 738  PMGEEIEKFTPVQHPANDVNSDIITTHFDYHSID-GNLLKLDILGHDDPTMIRMLEDLTG 796

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                      +P D  +   L      LGI   +  G R    G+     +  + ++   
Sbjct: 797  ISAR-----TVPLDQRDVMSLFAGTQALGISPEDIGGCRLGCLGIPEFGTDFAMQMLIDT 851

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYS 706
            +P    ++V      +G +  + +   LI          I  ++ +M       + SG +
Sbjct: 852  KPKYFSDLVRIAGLSHGTDVWLGNAQVLIQNGTATISTAICTRDDIMIYLIGKGVESGLA 911

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             +  + +R+  G          +E +I    ++ +        +    K   Y F K+HA
Sbjct: 912  FTIMESVRKGKG---------LREEWIQTMKEHDVPD-----WYIWSCKLIKYMFPKAHA 957

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLE------------------------------- 795
            AAY +++Y+ AW K  +P+ + AA  ++                                
Sbjct: 958  AAYVMMAYRIAWYKVFHPLAYYAAFFSIRATSFSYELMCMGKERLEYYMAEIRKKGDAAS 1017

Query: 796  --MDNVEKIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
                +  K  +  Q+        +P          F++  +++  +L  I+G+G   A  
Sbjct: 1018 KKEQDTLKDMRIVQEMYARGFDFVPIDLYKAKAHRFQIIGDKLMPALDTIEGLGDKAAEA 1077

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +++A+A   F S +DF  R    K    +++ +   G
Sbjct: 1078 VVDAAAKGRFLSKDDFRDRTKVSKTVIDLMDDMDLFG 1114



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 5  LEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          ++ SP   V L  H+  S ++G      ++ +       AIAITD   + S  E 
Sbjct: 1  MDTSPQKRVELHCHTKMSDMDGVSDAKALVKRAYEWGHKAIAITDHGVVQSFPEA 55


>gi|153873151|ref|ZP_02001826.1| DNA polymerase III, alpha subunit [Beggiatoa sp. PS]
 gi|152070384|gb|EDN68175.1| DNA polymerase III, alpha subunit [Beggiatoa sp. PS]
          Length = 537

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 152/403 (37%), Positives = 225/403 (55%), Gaps = 19/403 (4%)

Query: 644  IALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +ALV+LYRPGP+ + +V  +  RK+G EK    HP + P+LK T GVI+YQEQVMQIAQ+
Sbjct: 1    MALVALYRPGPLQSGMVDDFIERKHG-EKFEYPHPDLAPILKSTYGVIVYQEQVMQIAQV 59

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            L+GY+L  AD+LRRAMGKK  EEM KQ+  F  GA++ G+ +  +  IF+L+ KFA YGF
Sbjct: 60   LAGYTLGGADILRRAMGKKKPEEMKKQRTVFTKGATERGVDEEKSTYIFDLMEKFAAYGF 119

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPS 820
            N SH+AAYA+++YQTAW+K HYP  F+AA ++ +MDN +K+  F ++ R    ++++ P+
Sbjct: 120  NLSHSAAYALLAYQTAWLKAHYPAAFMAAVLSADMDNSDKVVPFIEECRHAMKLKVLSPN 179

Query: 821  VNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKK 876
            +N     F V       I Y L AIKG G      ++E       F  L D C RV+ +K
Sbjct: 180  INASHYKFTVIAGDPRAIRYGLGAIKGAGEAALEGMIEERQSKGKFKDLFDLCRRVNLRK 239

Query: 877  LNRRVLESLVFAGALDCFGY-------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            ++RRVLE L+ +GA D  G        +R  ++ SLDN  K A+     + +   +IFA+
Sbjct: 240  VSRRVLEPLIKSGAFDELGPEPTKIGINRAVMMASLDNAIKEAERYSSEKASGQNDIFAN 299

Query: 930  EKGTFSDKITLE---KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
               T S +            N + +   E+  LGFY SGHP+  Y+  L ++        
Sbjct: 300  STQTKSPEKAPPFVQPVKPWNQTEQLNGEKESLGFYLSGHPVKPYETELAQLNCVRLAHI 359

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              T +   IR    V   +    ++G  + ++T  +     E 
Sbjct: 360  KPTEKKQTIRAGGWVTEVRTTYNKRGK-MAFITLDDSTARLEI 401


>gi|15643227|ref|NP_228271.1| DNA polymerase III, alpha subunit, putative [Thermotoga maritima
           MSB8]
 gi|7227889|sp|Q9ZHG4|DPO3A_THEMA RecName: Full=DNA polymerase III subunit alpha
 gi|4980970|gb|AAD35546.1|AE001724_4 DNA polymerase III, alpha subunit, putative [Thermotoga maritima
           MSB8]
          Length = 842

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 223/767 (29%), Positives = 345/767 (44%), Gaps = 128/767 (16%)

Query: 216 NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-----TPDHYLKNRSE-----MVSIF- 264
           +       + E  D L+   +      +D P       TP  YL    +     M  IF 
Sbjct: 64  DGRIFVARNREEFDSLVRYYNGETHEIEDIPVFQESELTPVRYLDASEKKASIFMRKIFG 123

Query: 265 -----SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
                   PE  E+  +I    ++ L+V      RF     +       NEL  K    L
Sbjct: 124 LDEDVQGFPEKCEDVADILNAEAYDLRV----NHRFPTPPKN------WNELLIKKAEPL 173

Query: 320 EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                          ++Y  RL  EL VI R  F+ Y   V   ++ AKK  I VGPGRG
Sbjct: 174 --------------GEEYISRLKRELEVIKRKGFTPYIYTVEKVVEIAKKMGIKVGPGRG 219

Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
           S  GS+ AY   IT++DP+++ LLFERFLN +R   PD D+D    RR ++I+ +   + 
Sbjct: 220 SAVGSLVAYLCGITEVDPIKYDLLFERFLNEERQEPPDIDVDVEDRRRKDLIKELSKSF- 278

Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             +V Q+ TFG+L  K+                                           
Sbjct: 279 --QVYQVSTFGNLTEKS--------------------------------------LKNLI 298

Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
            + L D S++   EI + + GL  H S HAAG+VI + PL    P+      D+P+T ++
Sbjct: 299 NSVLPDASLEEKNEIYKTVYGLPHHPSVHAAGVVISENPL----PLPTRTEEDIPITDYD 354

Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
           M  +++ G++K D LGLKTL+ ++     +             + D +TYHL++   TLG
Sbjct: 355 MYDLQEIGVVKIDILGLKTLSFIKDFKKEI-----------FDYSDEKTYHLISKGKTLG 403

Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPL 677
           +FQLE    R+    + P  ++++  L++L RPGP+ +   V+++N KN           
Sbjct: 404 VFQLEGLQARKLCRRISPRNMDELSILLALNRPGPLRSGLDVMFSNSKNVP-------AF 456

Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
              M  ET+GV+IYQEQ+M++A   +G S +EAD+LRRA+ KK +E+M+   E+   G  
Sbjct: 457 FRKMFPETRGVLIYQEQIMRLAM-FAGLSGTEADILRRAIAKKEREKMEPLLEKMKKGLL 515

Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
           + G+    A  I E+L  F+ Y FNKSH+ AYA I+YQTA++K H+  EF          
Sbjct: 516 EKGM--ENAEQILEILLNFSSYAFNKSHSVAYAHITYQTAYLKAHHLEEFFKLYFAYNSS 573

Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
           +  KI    Q+ R    ++ PP +N    D       +Y  L  +KGVG T    I +  
Sbjct: 574 DAGKIFLAVQELRNEGYRVHPPDINISGKDLVFHGKDVYLPLTVVKGVGVTLVEQIEKIR 633

Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
              P  S+ +   RV    + R V+ESL+ AGA D    +R   L+ L+   +      +
Sbjct: 634 ---PVSSVRELQERV--TGVPRNVVESLITAGAFDKLYENRKLALEELNKRVEKDILEIR 688

Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
                  ++F  +    S  I +   +        E E++ +GF  +
Sbjct: 689 -------SLFGEKVEQESSNIKIGDIT--------ELEEKSMGFPLT 720



 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 16 VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
          V S YS     +    +   +      ++ + D  N  +A++F+      G+ P+ G  
Sbjct: 5  VISPYSFDGSVVRFEKLALLLKRKGLKSVILADR-NFHAAVKFNTIMRKHGLIPVHGLW 62


>gi|13959345|sp|Q9CDT7|DPO3_LACLA RecName: Full=DNA polymerase III polC-type; Short=PolIII
          Length = 1638

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 156/914 (17%), Positives = 325/914 (35%), Gaps = 162/914 (17%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+ ++          + L   T EG + L ++VS   +        R+  S L E   
Sbjct: 773  NDKLVSEDSYKKVRPKHVTLYAKTQEGLKNLFKIVSFGNVK-YYAGLPRVPRSVL-EANR 830

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYD-----R 194
            EGL++ +    G +  A    + +   +    +   ++F   LY +L     +       
Sbjct: 831  EGLLVGSACEIGEVFDAAINKTFEETLEIAKFYDFIEVFPPALYRSLVVGGSFKSEKELE 890

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-------VAHSTVVSQKDRPR 247
                 ++++  T   P++AT N  +L+ ED    ++++        +  +    +  +P 
Sbjct: 891  QTLKDLIKIGKTLGKPVLATGNLHYLNPEDAIYREIIVRSLGLGAEINWTQGHGEHAKPL 950

Query: 248  VTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECD-DIQ 304
              P+ + +   EM+  FS L E  A E  ++  ++ +    V  P+       +   D  
Sbjct: 951  PLPEAHFRTTDEMLEAFSFLDEKTAREIVIDNTQKMADEFDVLTPVRDDLYTPKMVFDGG 1010

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +  E  +                            RL+ EL  I    FS  ++I  + +
Sbjct: 1011 ETSEERIVRLTYEKAHE------WYGNPLPDIIDARLEKELRSILGNGFSVVYIISQELV 1064

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL-------------------------- 398
            + +      VG  RGS   S+ A  + IT+++PL                          
Sbjct: 1065 KRSNDRGYIVG-SRGSVGSSLVATMIGITEVNPLAPHYRCPECQYFECYDDGSFGSGYDM 1123

Query: 399  ---------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                              + FE FL      +PD D++F  D +      V++ +G +  
Sbjct: 1124 PDKNCPKCDHKLIKDGHDIPFETFLGFKGDKVPDIDLNFSGDDQPLAHLDVRDIFGEDYA 1183

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
             +  T G++  K A   V +  +  Y Q                                
Sbjct: 1184 FRAGTIGTVAEKTAFGFV-KGYERDYDQ------------------------------FY 1212

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQF 558
             +  +DRL   +    G+ R    H  GI++      +    P+     DV ++   T F
Sbjct: 1213 GNAEIDRL---AAGSTGVKRTTGQHPGGIIVIPNYMDVYDFSPVQFPADDVNAEWQTTHF 1269

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
            +   I    ++K D LG    T+++K           +    IP DD     L T   +L
Sbjct: 1270 DFHAIHD-NILKLDILGHDDPTMIRKLQSL-----SGIVPQDIPMDDPGVMKLFTGTESL 1323

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPL 677
            G+ + E  G++    G+        + +++  +P    +++  +   +G +    +   L
Sbjct: 1324 GLTE-EQLGVKLGTLGIPEMGTFTSMNMIAEAKPKNFADLLQISGLSHGTDVWSGNAQDL 1382

Query: 678  IDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            I   + +   VI  ++ +M       L +G + +  + +R+ M  KI  E   ++E+++ 
Sbjct: 1383 IRSGIADLSSVIGCRDDIMVYLIHKGLENGLAFTIMERVRKGMWNKIPAE---EREKYVE 1439

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               ++ + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1440 AMREHDVPEWYIESCSKI-----KYMFPKAHAAAYIMMALRVAYFKVHHPILYYCAWFSI 1494

Query: 795  EMDNVE-------------KIK--------------------KFCQDARQFNIQIMPPSV 821
                 +             K+K                    + C +  +         +
Sbjct: 1495 RATAFDIGVMGAGLEAVKAKMKEIKDKGFDATNVETNLYTTLELCNEMLERGFTFGKIDL 1554

Query: 822  NTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                  +F +  + +      + G+G   A+ I+ A A+  F S  +   R     +++ 
Sbjct: 1555 YRSEATEFVIDGDTLIPPFVTMDGLGENVAKQIVAARAEGEFLSKMELRKR---GGVSQT 1611

Query: 881  VLESLVFAGALDCF 894
            ++E++   G L+  
Sbjct: 1612 IIENMTNMGVLEGM 1625



 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   S ++++ + A     AIAITD   L S  E        G++ I 
Sbjct: 510 VEFHAHTNMSQMDAIPSASSLVAQAAKWGHKAIAITDHGGLQSFPEAHSAGKKNGVKIIY 569

Query: 72  GC 73
           G 
Sbjct: 570 GV 571


>gi|281411683|ref|YP_003345762.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
 gi|281372786|gb|ADA66348.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
          Length = 842

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 210/696 (30%), Positives = 324/696 (46%), Gaps = 89/696 (12%)

Query: 272 ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
           E    I  R  F L       P   E   D +  E  +   N           +  I K 
Sbjct: 111 ERKASIFMRKVFGLDEDVQGFPEKCEDAVDTLNAEAYDLRVNHRFPTPPEDWDESLIEKA 170

Query: 332 YH-AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
               ++Y  RL  EL VI R  F+ Y   V   +  A+K  I VGPGRGS  GS+ A+  
Sbjct: 171 ESLGEEYVSRLKRELEVIKRKGFTPYIYTVGKVVDIARKLGIKVGPGRGSAVGSLVAHLC 230

Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
            IT+IDP+++ LLFERFLN +R   PD D+D    RR ++I+ +   +   +V Q+ TFG
Sbjct: 231 GITEIDPIKYDLLFERFLNEERQEPPDIDVDVEDRRRKDLIKELSKSF---QVYQVSTFG 287

Query: 451 SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
           +L  K+                                            + L D S++ 
Sbjct: 288 NLTEKS--------------------------------------LKNLINSVLPDASLEE 309

Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
             EI + + GL  H S HAAGIVI + PL    P+      D+P+T ++M  +++ G++K
Sbjct: 310 KNEIYKIVYGLPHHPSVHAAGIVISENPL----PLPTREEEDIPITDYDMYDLQEIGVVK 365

Query: 571 FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            D LGLKTL+ ++     +             + D +TYHL++   TLG+FQLE    R+
Sbjct: 366 IDILGLKTLSFIKDFKKEI-----------FDYSDEKTYHLISKGKTLGVFQLEGLQARK 414

Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
               + P  ++++  L++L RPGP+ +   V+++N KN  E              ET+GV
Sbjct: 415 LCRRISPRNMDELSILLALNRPGPLRSGLDVMFSNPKNVPE-------FFRKTFPETRGV 467

Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
           +IYQEQ+M++A   +G S +EAD+LRRA+ KK +E+M+   E+   G  + G+    A  
Sbjct: 468 LIYQEQIMRLAM-FAGLSGTEADILRRAIAKKEREKMEPLLEKMKKGLLEKGM--ENAEQ 524

Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
           I E+L  F+ Y FNKSH+ AYA I+YQTA++K H+  EF          + EKI    Q+
Sbjct: 525 ILEILLNFSSYAFNKSHSVAYAHITYQTAYLKVHHLEEFFKLYFAYNSSDTEKIFLAVQE 584

Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
            R    ++ PP +NT   +       +Y  L  +KGVG T    I +     P +S+ + 
Sbjct: 585 LRSEGYRVHPPDINTSGKELVFHGKDVYLPLTVVKGVGATLVEQIEKIR---PINSVREL 641

Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             RV    + R V+ESL+ AG  D    +R   L+ L+   +      +       ++F 
Sbjct: 642 QERV--TGVPRNVVESLITAGVFDKLYENRKLALEELNKKVEKDILEIR-------SLFG 692

Query: 929 HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +    S  I +   +        E E++ +GF  +
Sbjct: 693 EKVEQESSNIKIGDIT--------ELEEKSMGFPLT 720


>gi|15674106|ref|NP_268281.1| DNA polymerase III PolC [Lactococcus lactis subsp. lactis Il1403]
 gi|12725180|gb|AAK06222.1|AE006440_8 DNA polymerase III, alpha chain [Lactococcus lactis subsp. lactis
            Il1403]
          Length = 1658

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 156/914 (17%), Positives = 325/914 (35%), Gaps = 162/914 (17%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+ ++          + L   T EG + L ++VS   +        R+  S L E   
Sbjct: 793  NDKLVSEDSYKKVRPKHVTLYAKTQEGLKNLFKIVSFGNVK-YYAGLPRVPRSVL-EANR 850

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYD-----R 194
            EGL++ +    G +  A    + +   +    +   ++F   LY +L     +       
Sbjct: 851  EGLLVGSACEIGEVFDAAINKTFEETLEIAKFYDFIEVFPPALYRSLVVGGSFKSEKELE 910

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-------VAHSTVVSQKDRPR 247
                 ++++  T   P++AT N  +L+ ED    ++++        +  +    +  +P 
Sbjct: 911  QTLKDLIKIGKTLGKPVLATGNLHYLNPEDAIYREIIVRSLGLGAEINWTQGHGEHAKPL 970

Query: 248  VTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECD-DIQ 304
              P+ + +   EM+  FS L E  A E  ++  ++ +    V  P+       +   D  
Sbjct: 971  PLPEAHFRTTDEMLEAFSFLDEKTAREIVIDNTQKMADEFDVLTPVRDDLYTPKMVFDGG 1030

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +  E  +                            RL+ EL  I    FS  ++I  + +
Sbjct: 1031 ETSEERIVRLTYEKAHE------WYGNPLPDIIDARLEKELRSILGNGFSVVYIISQELV 1084

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL-------------------------- 398
            + +      VG  RGS   S+ A  + IT+++PL                          
Sbjct: 1085 KRSNDRGYIVG-SRGSVGSSLVATMIGITEVNPLAPHYRCPECQYFECYDDGSFGSGYDM 1143

Query: 399  ---------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                              + FE FL      +PD D++F  D +      V++ +G +  
Sbjct: 1144 PDKNCPKCDHKLIKDGHDIPFETFLGFKGDKVPDIDLNFSGDDQPLAHLDVRDIFGEDYA 1203

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
             +  T G++  K A   V +  +  Y Q                                
Sbjct: 1204 FRAGTIGTVAEKTAFGFV-KGYERDYDQ------------------------------FY 1232

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQF 558
             +  +DRL   +    G+ R    H  GI++      +    P+     DV ++   T F
Sbjct: 1233 GNAEIDRL---AAGSTGVKRTTGQHPGGIIVIPNYMDVYDFSPVQFPADDVNAEWQTTHF 1289

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
            +   I    ++K D LG    T+++K           +    IP DD     L T   +L
Sbjct: 1290 DFHAIHD-NILKLDILGHDDPTMIRKLQSL-----SGIVPQDIPMDDPGVMKLFTGTESL 1343

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPL 677
            G+ + E  G++    G+        + +++  +P    +++  +   +G +    +   L
Sbjct: 1344 GLTE-EQLGVKLGTLGIPEMGTFTSMNMIAEAKPKNFADLLQISGLSHGTDVWSGNAQDL 1402

Query: 678  IDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            I   + +   VI  ++ +M       L +G + +  + +R+ M  KI  E   ++E+++ 
Sbjct: 1403 IRSGIADLSSVIGCRDDIMVYLIHKGLENGLAFTIMERVRKGMWNKIPAE---EREKYVE 1459

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               ++ + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1460 AMREHDVPEWYIESCSKI-----KYMFPKAHAAAYIMMALRVAYFKVHHPILYYCAWFSI 1514

Query: 795  EMDNVE-------------KIK--------------------KFCQDARQFNIQIMPPSV 821
                 +             K+K                    + C +  +         +
Sbjct: 1515 RATAFDIGVMGAGLEAVKAKMKEIKDKGFDATNVETNLYTTLELCNEMLERGFTFGKIDL 1574

Query: 822  NTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                  +F +  + +      + G+G   A+ I+ A A+  F S  +   R     +++ 
Sbjct: 1575 YRSEATEFVIDGDTLIPPFVTMDGLGENVAKQIVAARAEGEFLSKMELRKR---GGVSQT 1631

Query: 881  VLESLVFAGALDCF 894
            ++E++   G L+  
Sbjct: 1632 IIENMTNMGVLEGM 1645



 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   S ++++ + A     AIAITD   L S  E        G++ I 
Sbjct: 530 VEFHAHTNMSQMDAIPSASSLVAQAAKWGHKAIAITDHGGLQSFPEAHSAGKKNGVKIIY 589

Query: 72  GC 73
           G 
Sbjct: 590 GV 591


>gi|281492785|ref|YP_003354765.1| DNA polymerase III subunit alpha [Lactococcus lactis subsp. lactis
            KF147]
 gi|281376437|gb|ADA65923.1| DNA polymerase III, alpha subunit [Lactococcus lactis subsp. lactis
            KF147]
          Length = 1638

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 156/914 (17%), Positives = 326/914 (35%), Gaps = 162/914 (17%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+ ++          + L   T EG + L ++VS   +        R+  S L E   
Sbjct: 773  NDKLVSEDSYKKVRPKHVTLYAKTQEGLKNLFKIVSFGNVK-YYAGLPRVPRSVL-EANR 830

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYD-----R 194
            EGL++ +    G +  A    + +   +    +   ++F   LY +L     +       
Sbjct: 831  EGLLVGSACEIGEVFDAAINKTFEETLEIAKFYDFIEVFPPALYRSLVVGGSFKSEKELE 890

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-------VAHSTVVSQKDRPR 247
                 ++++  T + P++AT N  +L+ ED    ++++        +  +    +  +P 
Sbjct: 891  QTLKDLIKIGKTLDKPVLATGNLHYLNPEDAIYREIIVRSLGLGAEINWTQGHGEHAKPL 950

Query: 248  VTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECD-DIQ 304
              P+ + +   EM+  FS L E  A E  ++  ++ +    V  P+       +   D  
Sbjct: 951  PLPEAHFRTTDEMLEAFSFLDEKTAREIVIDNTQKLADEFDVLTPVRDDLYTPKMVFDGG 1010

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +  E  +                            RL+ EL  I    FS  ++I  + +
Sbjct: 1011 ETSEERIVRLTYEKAHE------WYGNPLPDIIDARLEKELRSILGNGFSVVYIISQELV 1064

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL-------------------------- 398
            + +      VG  RGS   S+ A  + IT+++PL                          
Sbjct: 1065 KRSNDRGYIVG-SRGSVGSSLVATMIGITEVNPLAPHYRCPECQYFECYDDGSFGSGYDM 1123

Query: 399  ---------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                              + FE FL      +PD D++F  D +      V++ +G +  
Sbjct: 1124 PDKNCPKCDHKLIKDGHDIPFETFLGFKGDKVPDIDLNFSGDDQPLAHLDVRDIFGEDYA 1183

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
             +  T G++  K A   V +  +  Y Q                                
Sbjct: 1184 FRAGTIGTVAEKTAFGFV-KGYERDYDQ------------------------------FY 1212

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQF 558
             +  +DRL   +    G+ R    H  GI++      +    P+     DV ++   T F
Sbjct: 1213 GNAEIDRL---AAGSTGVKRTTGQHPGGIIVIPNYMDVYDFSPVQFPADDVNAEWQTTHF 1269

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
            +   I    ++K D LG    T+++K           +    IP DD     L T   +L
Sbjct: 1270 DFHAIHD-NILKLDILGHDDPTMIRKLQSL-----SGIVPQDIPMDDPGVMKLFTGTESL 1323

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPL 677
            G+ + E  G++    G+        + +++  +P    +++  +   +G +    +   L
Sbjct: 1324 GLTE-EQLGVKLGTLGIPEMGTFTSMNMIAEAKPKNFADLLQISGLSHGTDVWSGNAQDL 1382

Query: 678  IDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            I   + +   VI  ++ +M       L +G + +  + +R+ M  KI  E   ++E+++ 
Sbjct: 1383 IRSGIADLSSVIGCRDDIMVYLIHKGLENGLAFTIMERVRKGMWNKIPAE---EREKYVE 1439

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               ++ + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1440 AMREHDVPEWYIESCSKI-----KYMFPKAHAAAYIMMALRVAYFKVHHPILYYCAWFSI 1494

Query: 795  EMDNVE-------------KIK--------------------KFCQDARQFNIQIMPPSV 821
                 +             K+K                    + C +  +         +
Sbjct: 1495 RATAFDIGVMGAGLEAVKAKMKEIKDKGFDATNVETNLYTTLELCNEMLERGFTFGKIDL 1554

Query: 822  NTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                  +F +  + +      + G+G   A+ I+ A A+  F S  +   R     +++ 
Sbjct: 1555 YHSEATEFVIDGDTLIPPFVTMDGLGENVAKQIVAARAEGEFLSKMELRKR---GGVSQT 1611

Query: 881  VLESLVFAGALDCF 894
            ++E++   G L+  
Sbjct: 1612 IIENMTNMGVLEGM 1625



 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   S ++++ + A     AIAITD   L S  E        G++ I 
Sbjct: 510 VEFHAHTNMSQMDAIPSASSLVAQAAKWGHKAIAITDHGGLQSFPEAHSAGKKNGVKIIY 569

Query: 72  GC 73
           G 
Sbjct: 570 GV 571


>gi|313124033|ref|YP_004034292.1| DNA polymerase iii, alpha subunit (gram-positive type) (polc)
            [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280596|gb|ADQ61315.1| DNA polymerase III, alpha subunit (Gram-positive type) (PolC)
            [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 1445

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 180/946 (19%), Positives = 320/946 (33%), Gaps = 187/946 (19%)

Query: 57   EFSQKACAAG------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE-GY 109
              +Q A A G      +        + D+      +N           I +L    + G 
Sbjct: 570  RANQDAEATGYLMFKLLDAFNDKYQEDDLGKMNDYSNGEGYKRARPTHITVLAQNQKPGL 629

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            + L ELVS   +    K  +R   S L+ +   GL+  +  S G +  A      + A+K
Sbjct: 630  RNLYELVSLAGIKYNFKG-LRTPKSELRRLHA-GLLYGSACSQGEVFIAMMQKGYEEAKK 687

Query: 170  RLLTFK--KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
            +   +   ++     Y       L           + + +L      P+VAT+++ ++ +
Sbjct: 688  KAEFYDFLEIQPPSNYSSLIAEGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDK 747

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
             +    DVL+A          +R +  PD +     EM+  FS + E +   V I+    
Sbjct: 748  HEAIYRDVLLAAQRG----NPNRNKQHPDLHFYTTQEMLDEFSFMGEDIAKEVVISNPNK 803

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                +   + P   E     I    E  +R                       + + RLD
Sbjct: 804  INAMIDEGVQPVQDESFPPKIPHTAER-VRKLTYDKAHELYGD------PLPDNIQARLD 856

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF-- 400
             EL+ I    +   +LI    +  + K+   VG  RGS   S+ A  + IT+I+P+    
Sbjct: 857  RELDAIIGNGYGVVYLISQMLVAKSVKDGYLVG-SRGSVGSSLVATMMGITEINPMPPHY 915

Query: 401  ---------------------------------------SLLFERFLNPDRMSMPDFDID 421
                                                   ++ FE FL      +PD D++
Sbjct: 916  RCPKCKQSEFFENGEYASGFDLPDKKCPDCQVMMVKDGQNIPFETFLGFHGDKVPDIDLN 975

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  D +     +++  +G     +  T G+L  K A+                       
Sbjct: 976  FSGDYQPVAHNFIRVMFGPNHSFKAGTVGTLADKKAIGYAKHYQDEHP------------ 1023

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPL 539
                              E ++ +  VDRL   +  + G+      H AGIV+   D+ +
Sbjct: 1024 ------------------EIKMNNAEVDRL---AIGVTGVKATTGQHPAGIVVLPDDKDI 1062

Query: 540  SQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
             +L P+         +   T F+   I    L+KFD LG +  T+++   D        +
Sbjct: 1063 YELTPLQYPSDDISKEWKTTHFDFHQIHD-NLLKFDILGHQDPTMIRMLQDL-----SGI 1116

Query: 597  DLSLIPFDDHETYHLLT--------------TKGTLGIFQLESSGMRQALEGMQPDCIED 642
            D   IP DD +   L +                GTLG+ +  +  +R  LE  +P    +
Sbjct: 1117 DPLTIPTDDPKVMSLFSSPEALGVTPEQINSKTGTLGLPEFGTPFVRGMLEETKPSTFAE 1176

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++ +  L     +          NG  K+ S+    D ++ +     + +E         
Sbjct: 1177 LLQISGLSHGTDVWLGNAEELINNGTCKLKSVIGCRDNIMTDLIRWGVKEE--------- 1227

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
               + S  + +R+  G    E M   KE          I      +  ++      Y F 
Sbjct: 1228 --VAFSTMETVRKGKGI-SDENMAVLKEN-------KNIPDWYIPSCLKI-----KYMFP 1272

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------------------- 800
            K+HAAAY +++ + AW K +YP  + AA  ++  D V+                      
Sbjct: 1273 KAHAAAYILMALRVAWFKVYYPEIYYAAYFSVRADKVDLEAMSRGKNTVVALINRIKEKG 1332

Query: 801  ----KIKK-------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGT 847
                K++K          +A +  I      +N      +K+ D         A+ G+G 
Sbjct: 1333 TAATKLEKDLQTYMELVNEAIERGINFKMVDINESEATTYKIVDKHTILAPFNAVDGLGD 1392

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE-SLVFAGALD 892
            + A+ I+ A ++ PF S ED   R    +      E + V  G  D
Sbjct: 1393 SAAKQIVAARSEAPFLSKEDLQVRGKVSQKIMDFFENNNVLEGMPD 1438



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 6/111 (5%)

Query: 1   LTQYLEKSPSF------VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           LT+++ +  ++      V L VH++ S L+    + +I+       QPA+AITD   L +
Sbjct: 323 LTEHVGRQEAYQGEEKHVELHVHTNMSQLDATSDVADIIKTAKKFGQPAVAITDHAGLQA 382

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                +     G++ I+G + ++     L + N     +     ++  V T
Sbjct: 383 LPNAFEAGKKTGMKVIMGLEANMVEDHGLLVLNPASMKYEDQEFVIFDVET 433


>gi|229824076|ref|ZP_04450145.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
 gi|229786430|gb|EEP22544.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
          Length = 1435

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 158/941 (16%), Positives = 302/941 (32%), Gaps = 196/941 (20%)

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
                  Q      +    Q N ++               L+    EG + L +L+S   +
Sbjct: 576  CYKLLDQAKEQYGMVRHEQLNEQVGKGDSYKQARPFHATLIAKNQEGLKDLFKLISASNV 635

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------- 174
                 +  RI  S L +     L++ T  S+G +  A        AEK +  +       
Sbjct: 636  -QYFFREPRIPRSLLTKYRDN-LLVGTACSNGEVFTAMMQKGYDEAEKLVDFYDYIELQP 693

Query: 175  KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            K ++G  +   L R          ++V+L       +VAT +  +L  +D    ++L+  
Sbjct: 694  KSVYGPLIETELIRSEADLETIMKEMVRLGQDKNKLVVATGDVHYLEPKDAIYREILL-- 751

Query: 235  AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSFILQVHAPIL 292
               ++    +R    P  + +   EM++ F  L   L   + I    + + +++    I 
Sbjct: 752  --RSMKINANRTLHLPPVHFRTTDEMMAEFDFLGRDLAYELVITNPQKIADMVEEVEVIK 809

Query: 293  PRFIEKECDDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             +          +E  E +  R + + G                +   +R++ EL  I  
Sbjct: 810  DKLYTPNIPGANEEITELSYTRARELYG------------DPLPEIVEKRIEKELKSIIG 857

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF---------- 400
              F+  +LI    +  +  +   VG  RGS   S+ A    IT+++PL            
Sbjct: 858  NGFAVIYLISQKLVHKSVSDGYLVG-SRGSVGSSLVATLTGITEVNPLAPHYYCPNCQYS 916

Query: 401  -------------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F    +  
Sbjct: 917  EFIADGSVGSGYDLPAKDCPHCGHALNKDGQDIPFETFLGFYGDKVPDIDLNFSGAYQPR 976

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G + V +  T  ++  + A   V   L++    + +  K            
Sbjct: 977  AHAYTKELFGEDYVYRAGTISTVAERTAFGYVKGYLEVAQQFLPQAEKE----------- 1025

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYR 547
                                    +++ +EG+ R    H  GI++      +    P+  
Sbjct: 1026 -----------------------RLAKGIEGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1062

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D        +D   IP  
Sbjct: 1063 PADEVTAEWRTTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDL-----SGIDPKTIPPT 1116

Query: 605  DHETY--------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            D +                 + +  GTLGI +  +  +R  LE  +P    +++ +  L 
Sbjct: 1117 DPDVMKIFSSPEVLGVTPEQIFSKTGTLGIPEFGTGFVRGMLEESKPATFAELLQISGLS 1176

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSL 707
                +                 +   LI   +     VI  ++ +M       L  G + 
Sbjct: 1177 HGTDVWLG--------------NAQELIKNKIAPLAKVIGCRDDIMVTLIYYGLEDGLAF 1222

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
               + +R+   K I E+   +            +        +        Y F K+HAA
Sbjct: 1223 KIMESVRKG--KGIPEDWQAE------------MRAKKVPEWYIDSCLKIKYMFPKAHAA 1268

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------------ 803
            AY +++ + A+ K H P+ + AA  ++  D+ + +                         
Sbjct: 1269 AYVLMALRVAYFKVHMPIMYYAAYFSVRADDFDIVAMHQGKEMVKRRIREINDKGFDASV 1328

Query: 804  ---------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHI 853
                     +   +  +  +     S+     D F +  N +     A+ G+G   A+ I
Sbjct: 1329 KDKNLLTVLELANEMLERGLSFQMISLEKSDADCFIIEGNSLIPPFRAVPGLGANVAQQI 1388

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVL-ESLVFAGALDC 893
            ++A  + PF S ED   R    K     L E  V  G  D 
Sbjct: 1389 IKARQEAPFLSKEDLQKRGKVSKTILDYLSEQGVLNGLPDS 1429



 Score = 74.2 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L +HS+ S ++    + +++ + AA    AIAITD     +  +        GI+ + 
Sbjct: 334 IELHLHSNMSQMDATNKVGDLIAQAAAWGHSAIAITDHAGAQAFPDAYAAGKKHGIKVLY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG----YQRLIEL 115
           G + ++         N           +V  V T  G    Y R+IEL
Sbjct: 394 GIEANVVNDGEPIAYNPQAIDLDLATYVVFDVET-TGLSSVYDRIIEL 440


>gi|148269599|ref|YP_001244059.1| DNA polymerase III, alpha subunit [Thermotoga petrophila RKU-1]
 gi|147735143|gb|ABQ46483.1| DNA polymerase III, alpha subunit [Thermotoga petrophila RKU-1]
          Length = 842

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 210/696 (30%), Positives = 325/696 (46%), Gaps = 89/696 (12%)

Query: 272 ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
           E    I  R  F L       P   E   D +  E  +   N           +  I K 
Sbjct: 111 ERKASIFMRKVFGLDEDVQGFPEKCEDAVDTLNAEAYDLRVNHRFPTPPEDWDESLIEKA 170

Query: 332 YH-AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
               ++Y  RL  EL VI R  F+ Y   V   ++ A+K  I VGPGRGS  GS+ A+  
Sbjct: 171 ESLGEEYVSRLKRELEVIKRKGFTPYIYTVEKVVEIARKLGIKVGPGRGSAVGSLVAHLC 230

Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
            IT+IDP+++ LLFERFLN +R   PD D+D    RR ++I+ +   +   +V Q+ TFG
Sbjct: 231 GITEIDPIKYDLLFERFLNEERQEPPDIDVDVEDRRRKDLIKELSKSF---QVYQVSTFG 287

Query: 451 SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
           +L  K+                                            + L D S++ 
Sbjct: 288 NLTEKS--------------------------------------LKNLINSVLPDASLEE 309

Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
             EI + + GL  H S HAAGIVI + PL    P+      D+P+T ++M  +++ G++K
Sbjct: 310 KNEIYKIVYGLPHHPSVHAAGIVISENPL----PLPTREEEDIPITDYDMYDLQEIGVVK 365

Query: 571 FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            D LGLKTL+ ++     +             + D +TYHL++   TLG+FQLE    R+
Sbjct: 366 IDILGLKTLSFIKDFKKEI-----------FDYSDEKTYHLISKGKTLGVFQLEGLQARK 414

Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
               + P  ++++  L++L RPGP+ +   V+++N KN  E              ET+GV
Sbjct: 415 LCRRISPRNMDELSILLALNRPGPLRSGLDVMFSNPKNVPE-------FFRKTFPETRGV 467

Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
           +IYQEQ+M++A   +G S +EAD+LRRA+ KK +E+M+   E+   G  + G+    A  
Sbjct: 468 LIYQEQIMRLAM-FAGLSGTEADILRRAIAKKEREKMEPLLEKMKKGLLEKGM--ENAEQ 524

Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
           I E+L  F+ Y FNKSH+ AYA I+YQTA++K H+  EF          + EKI    Q+
Sbjct: 525 ILEILLNFSSYAFNKSHSVAYAHITYQTAYLKVHHLEEFFKLYFAYNSSDTEKIFLAVQE 584

Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
            R    ++ PP +NT   +       +Y  L  +KGVG T    I +     P +S+ + 
Sbjct: 585 LRSEGYRVHPPDINTSGKELVFHGKDVYLPLTVVKGVGATLVEQIEKIR---PINSVREL 641

Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             RV    + R V+ESL+ AG  D    +R   L+ L+   +      +       ++F 
Sbjct: 642 QERV--TGVPRNVVESLITAGVFDKLYENRKLALEELNKKVEKDILEIR-------SLFG 692

Query: 929 HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +    S  I +   +        E E++ +GF  +
Sbjct: 693 EKVEQESSNIKIGDIT--------ELEEKSMGFPLT 720



 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 16 VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
          V S YS     +    +   + +    ++ + D  N  +A++F+      G+ P+ G  
Sbjct: 5  VISPYSFDGSVVRFEKLALLLKSKGLKSVILADR-NFHAAVKFNTIMRKHGLIPVHGLW 62


>gi|295426318|ref|ZP_06818977.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664]
 gi|295063991|gb|EFG54940.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664]
          Length = 1435

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/905 (18%), Positives = 308/905 (34%), Gaps = 186/905 (20%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L     G + + +LVS     D   +  R   S L++   EGL+  +G   
Sbjct: 605  RARPMHMTILAKNQAGLKNMYKLVSIANTKD-FYREPRTPKSALRKYH-EGLLYGSGCWR 662

Query: 153  GPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAY 205
            G +  A        A ++   +   +L     Y       L + +       + + +L  
Sbjct: 663  GDVFIAMMQKGYDTAREKAKFYDYLELQPPATYSQLIADGLIKDKDELEEILTNIYKLGK 722

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
              + P+VA +++ ++   +     +L++       S  +R +  PD +  +  EM+  F+
Sbjct: 723  ELKKPVVADSDAHYVDPHEKIYRTILISAQ----RSNPNRNKPQPDLHFYSTQEMLDAFA 778

Query: 266  DLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
             L E  A E  ++   + +  L+  API         D+  +E ++   NKA        
Sbjct: 779  FLGEDAAKEIVIDNTNKIADELEEIAPIKDGLYPPHIDNADQEMKDLTYNKAYE------ 832

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                +      +  + R+D ELN I    ++  +LI    +  + K+   VG  RGS   
Sbjct: 833  ----LYGKPLPKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGSVGS 887

Query: 384  SVTAYALTITDIDPLRF-----------------------------------------SL 402
            S+ A    IT+++PL                                            +
Sbjct: 888  SLVATMSGITEVNPLAPHYRCPKCKYSHFYTNGEYGSGFDLPDKNCPKCGTPLVKDGQDI 947

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             F  FL      +PD D++F  D +     +++  +G +   +  T  ++  K A    G
Sbjct: 948  PFATFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPDNSYRAGTIATVADKTAY---G 1004

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             A                                  R+ +L +  +DRL   +  + G+ 
Sbjct: 1005 YAKHFDEE----------------------------RDLKLRNAELDRL---ATGVSGVK 1033

Query: 523  RHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H AGIV+      +    P+     DV +    T F+   I    ++KFD LG  
Sbjct: 1034 RTTGQHPAGIVVVPNNMDIYDFTPVQYPADDVNAAWLTTHFDFHSIHD-NILKFDILGHD 1092

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQL 623
              T+++   D        +D   IP DD     L ++               GTLGI + 
Sbjct: 1093 DPTMIRMLQDL-----SGIDPLTIPPDDPGVMSLFSSPKILGVTPEQIQSQTGTLGIPEF 1147

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +R  LE  +P    +++ +  L     +      +   NG  K+  +    D ++ 
Sbjct: 1148 GTRFVRGMLEETKPTTFAELLQISGLSHGTDVWLGNAEDLINNGTCKLKDVIGCRDNIMM 1207

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +     +  E           +S  E+    + +  +    +               I  
Sbjct: 1208 DLIHWGVKPEVA---------FSTMESVRHGKGISDENMAVL----------KKNKNIPD 1248

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                +  ++      Y F K+HA AY +++ + AW K +YP  +  A  ++  D  + + 
Sbjct: 1249 WYIPSCLKI-----KYMFPKAHATAYVLMALRIAWFKVYYPEIYYTAYFSVRADLFDLVA 1303

Query: 804  ---------------------------------KFCQDARQFNIQIMPPSVNTP-CVDFK 829
                                             +   +  +  I+I    V+    ++FK
Sbjct: 1304 MSHGKNTVKAAMKTIQDKGMDASAKDKSLLTVLEIANECLERGIKIKMVDVDKSEAMNFK 1363

Query: 830  VGDNRIYY-SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE-SLVF 887
            + D         A+ G+G   A+ I+ A A++ F S ED   R    +      E + V 
Sbjct: 1364 ILDKHTILAPFNAVPGLGDNAAKQIVAARAEQKFLSKEDLAKRGKVSQTIMDYFEDNGVL 1423

Query: 888  AGALD 892
             G  D
Sbjct: 1424 EGMPD 1428



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 42/104 (40%)

Query: 2   TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           T+  E     V L +H++ S L+   +  + +       Q AIAITD  ++ S  E    
Sbjct: 322 TEKYEGDQKRVELHLHTNMSQLDATSTPTDFIKTAKKFGQKAIAITDHGDVQSFPEAYHT 381

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
             +  I+ + G + ++     L + N     +     ++  V T
Sbjct: 382 GASEKIKILYGVEANMIDDHALLVLNPADMTYEDREFVIFDVET 425


>gi|326407708|gb|ADZ64779.1| DNA polymerase III subunit alpha, Gram-positive type [Lactococcus
            lactis subsp. lactis CV56]
          Length = 1638

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 155/914 (16%), Positives = 324/914 (35%), Gaps = 162/914 (17%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+ ++          + L   T EG + L ++VS   +        R+  S L E   
Sbjct: 773  NDKLVSEDSYKKVRPKHVTLYAKTQEGLKNLFKIVSFGNVK-YYAGLPRVPRSVL-EANR 830

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYD-----R 194
            EGL++ +    G +  A    + +   +    +   ++F   LY +L     +       
Sbjct: 831  EGLLVGSACEIGEVFDAAINKTFEETLEIAKFYDFIEVFPPALYRSLVVGGSFKSEKELE 890

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-------VAHSTVVSQKDRPR 247
                 ++++  T   P++AT N  +L+ ED    ++++        +  +    +  +P 
Sbjct: 891  QTLKDLIKIGKTLGKPVLATGNLHYLNPEDAIYREIIVRSLGLGAEINWTQGHGEHAKPL 950

Query: 248  VTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECD-DIQ 304
              P+ + +   EM+  FS L E  A E  ++  ++ +    V  P+       +   D  
Sbjct: 951  PLPEAHFRTTDEMLEAFSFLDEKTAREIVIDNTQKLADEFDVLTPVRDDLYTPKMVFDGG 1010

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +  E  +                            RL+ EL  I    FS  ++I  + +
Sbjct: 1011 ETSEERIVRLTYEKAHE------WYGNPLPDIIDARLEKELRSILGNGFSVVYIISQELV 1064

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL-------------------------- 398
            + +      VG  RGS   S+ A  + IT+++PL                          
Sbjct: 1065 KRSNDRGYIVG-SRGSVGSSLVATMIGITEVNPLAPHYRCPECQYFECYDDGSFGSGYDM 1123

Query: 399  ---------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                              + FE FL      +PD D++F  D +      V++ +G +  
Sbjct: 1124 PDKNCPKCDHKLIKDGHDIPFETFLGFKGDKVPDIDLNFSGDDQPLAHLDVRDIFGEDYA 1183

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
             +  T G++  K A   V +  +  Y Q                                
Sbjct: 1184 FRAGTIGTVAEKTAFGFV-KGYERDYDQ------------------------------FY 1212

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQF 558
             +  +DRL   +    G+ R    H  GI++      +    P+     DV ++   T F
Sbjct: 1213 GNAEIDRL---AAGSTGVKRTTGQHPGGIIVIPNYMDVYDFSPVQFPADDVNAEWQTTHF 1269

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
            +   I    ++K D LG    T+++K           +    IP DD     L T   +L
Sbjct: 1270 DFHAIHD-NILKLDILGHDDPTMIRKLQSL-----SGIVPQDIPMDDPGVMKLFTGTESL 1323

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPL 677
            G+ + E  G++    G+        + +++  +P    +++  +   +G +    +   L
Sbjct: 1324 GLTE-EQLGVKLGTLGIPEMGTFTSMNMIAEAKPKNFADLLQISGLSHGTDVWSGNAQDL 1382

Query: 678  IDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            I   + +   VI  ++ +M       L +G + +  + +R+ M  KI  E   ++E+++ 
Sbjct: 1383 IRSGIADLSSVIGCRDDIMVYLIHKGLENGLAFTIMERVRKGMWNKIPAE---EREKYVE 1439

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               ++ + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1440 AMREHDVPEWYIESCSKI-----KYMFPKAHAAAYIMMALRVAYFKVHHPILYYCAWFSI 1494

Query: 795  EMDNVE---------KIKKFCQDARQFNIQIMPPSVN----------------------- 822
                 +          +K   ++ +           N                       
Sbjct: 1495 RATAFDIGVMGAGLEAVKAKMKEIKDKGFDATNVETNLYTTLELCNEMLERNFTFGKIDL 1554

Query: 823  --TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
              +   +F +  + +      + G+G   A+ I+ A A+  F S  +   R     +++ 
Sbjct: 1555 YRSEATEFVIDGDTLIPPFVTMDGLGENVAKQIVAARAEGEFLSKMELRKR---GGVSQT 1611

Query: 881  VLESLVFAGALDCF 894
            ++E++   G L+  
Sbjct: 1612 IIENMTNMGILEGM 1625



 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   S ++++ + A     AIAITD   L S  E        G++ I 
Sbjct: 510 VEFHAHTNMSQMDAIPSASSLVAQAAKWGHKAIAITDHGGLQSFPEAHSAGKKNGVKIIY 569

Query: 72  GC 73
           G 
Sbjct: 570 GV 571


>gi|237737108|ref|ZP_04567589.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817]
 gi|229420970|gb|EEO36017.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817]
          Length = 1450

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 160/916 (17%), Positives = 324/916 (35%), Gaps = 192/916 (20%)

Query: 94   PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS-- 151
                ++++LV    G + + +LVS  ++   G +  RI  S L++   EGLI+ +  +  
Sbjct: 609  QDTHNVMVLVQNLAGLKNMYKLVSEAHIDYYGNKKPRILKSHLEKY-REGLIVGSSMTVH 667

Query: 152  ---SGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYD--------RYRES 198
                G +   +     +  EK +  +   +L     Y  +    G               
Sbjct: 668  FSNDGELTDYYMRYDYESIEKNIGFYDYIELLPKGAYSEIYEDDGTGSISSFKAIEDMNR 727

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
                LA    + + A++N  +L EEDY+   +L+  + +      ++ ++    Y +   
Sbjct: 728  YFYNLAKEKGILVTASSNVHYLDEEDYKIRSILLYGSGNVFR--ANQYKIDNKFYFRTTD 785

Query: 259  EMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
            EM+  FS L E  A E  V      +  ++   P+   F   + D+ +   +     KA 
Sbjct: 786  EMLEEFSYLGEDIAREIVVTNTNLIADKIEKIKPVPDGFYPPKIDNAENIVKEMTYEKAY 845

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                 R+    +      +    R++ ELN I    FS  +L     ++ +  +   VG 
Sbjct: 846  -----RIYGNPL-----PEIVNARIERELNAIIGNGFSVLYLSAQKLVKKSLDSGYLVG- 894

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S+ A+ + IT+++ L                                      
Sbjct: 895  SRGSVGSSLVAFMMGITEVNALYPHYICTNPECKNSEFIEREGVGIDLPEKNCPKCGKPY 954

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                +S+ FE F+  +   +PD D++F  + + E+ RY +  +G E V +  T  +L  K
Sbjct: 955  KRDGYSIPFEVFMGFNGDKVPDIDLNFSGEYQSEIHRYCEQLFGKENVFKAGTISTLAEK 1014

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V +                                    E      +   +L ++
Sbjct: 1015 NAEGYVKKYF----------------------------------EEHDMKNNKAEILRLA 1040

Query: 516  QKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIK 570
            +K EG  +    H  G+V+      + +  P+ +   D ++D   T ++   +++  L+K
Sbjct: 1041 KKCEGAKKTTGQHPGGMVVVPHDHTIYEFCPVQKPANDEKNDSITTHYDYHVMDEQ-LVK 1099

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------G 616
             D LG    T ++   ++       VD+  IP  D +T  + ++               G
Sbjct: 1100 LDILGHDDPTTIKLLQEYTG-----VDIYSIPLSDPDTLKIFSSTESLGVTPEQINSVVG 1154

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            T G+ +  +  +RQ L    P    +++ +  L       ++ + N ++  ++K      
Sbjct: 1155 TFGVPEFGTPFVRQMLIDTMPKTFAELVRISGLSHGT---DVWLNNAQEFIRQK------ 1205

Query: 677  LIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                       VI  ++ +M       L  G +    + +R+    K  E      +   
Sbjct: 1206 -----QATLSQVITVRDDIMNYLIDQGLEKGTAFKIMEFVRKGQPTKNPEGWKAYSDL-- 1258

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
                   + +      +    +   Y F K HA AY +++ + A+ K HYP+ F AA ++
Sbjct: 1259 -------MKEHNVAEWYIESCRRIKYMFPKGHAVAYVMMAMRIAYFKVHYPLAFYAAYLS 1311

Query: 794  LEMDNVE-------------------------------KIKKFCQDARQFNIQIMPPSVN 822
             + ++ +                                I +   +     ++ +P  + 
Sbjct: 1312 RKAEDFDYEIMGKPESAKSHLEILSKEPKLDVKKKAEMAICEIVVEMYARGLEFLPIDIY 1371

Query: 823  TPC-VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                V F + D +I   L A+ G+G     +I++   +  F S ED   R    +     
Sbjct: 1372 KSGGVKFTIEDGKIRVPLIALAGLGGAVIDNIIKEREESKFLSFEDLKRRTKVSQTIIDK 1431

Query: 882  LESLVFAGALDCFGYS 897
            L+ +    A+D    +
Sbjct: 1432 LKMIK---AIDSLSET 1444



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 37/81 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS  S + G   + +I+ +       A+AITD   + S     + A    I+PI+
Sbjct: 338 VELHTHSKMSEMVGVTDIADIIKQAIKFGHSAVAITDYAVVHSFPFAYKAAKGKDIKPIL 397

Query: 72  GCQLDIDMQDNLKMTNQGKTP 92
           GC++ +   + L + N    P
Sbjct: 398 GCEMYMVDDEALMVRNPKDVP 418


>gi|253579638|ref|ZP_04856907.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849139|gb|EES77100.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1489

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/937 (17%), Positives = 321/937 (34%), Gaps = 183/937 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +      I+ +        +  N                +++      G   L +L
Sbjct: 618  VKFVKMLEERDIRDVDMLNEQGAVSVNTIRKLP-------TYHVIIFARNETGRINLYKL 670

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL---- 171
            VS+ +L     +  R+  S L++   +GL++ +   +G + +A   N+      RL    
Sbjct: 671  VSQSHLK-YYHRRPRVPKSVLEQY-RDGLLVGSACEAGELYQAILRNAPDTEIARLVNFY 728

Query: 172  --LTFKKLFGDRLYVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
              L  + +  +R  +   +H         +    ++V+L    + P+VAT +  F+  +D
Sbjct: 729  DYLEIQPVGNNRFMIADDKHDMISSEEDLKEINRKIVKLGEQFKKPVVATCDVHFMDPQD 788

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCS 282
                 ++MA  +    + +  P       L+   EM+  F+ L   +A E  +    + +
Sbjct: 789  EIYRRIIMA-GNGFSDADEQAPLY-----LRTTEEMLEEFAYLGSEKAEEVVITNTNKIA 842

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
             +++  +PI P         + +  + +L+N                     +    RLD
Sbjct: 843  DMIEKISPIHPDKFPP----VIENSDQDLKNICFTKAHEMYGDPL------PEIVESRLD 892

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             ELN I    ++  ++I    +  + ++   VG  RGS   S+ A    IT+++PL    
Sbjct: 893  RELNSIISNGYAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSLAATMSGITEVNPLPPHY 951

Query: 400  --------------------------------------------FSLLFERFLNPDRMSM 415
                                                        F + FE FL       
Sbjct: 952  LCPNPDCKYSDFDSPEVKQYAGMAGCDMPDKICPKCGTRMKKEGFDIPFETFLGFKGDKE 1011

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  + +    RY +  +G  +  +  T G+L  K A   V              
Sbjct: 1012 PDIDLNFSGEYQANAHRYTEVIFGKGQTFKAGTIGTLAEKTAFGYVKNYF---------- 1061

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                    E R        +  I Q   G+ R    H  GI++ 
Sbjct: 1062 ------------------------EERGVHKRYCEINRIVQGCTGVRRTTGQHPGGIIVL 1097

Query: 536  D--RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 + +  P+     DV SD+  T F+   I+   L+K D LG    T+++   D   
Sbjct: 1098 PVGEEIEKFTPVQHPANDVNSDIITTHFDYHSID-GNLLKLDILGHDDPTMIRMLEDLTG 1156

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                      +P D  +   L  +   L I   +  G +    G+     +  + ++   
Sbjct: 1157 ISAR-----DVPLDQRDVMSLFASTKALKIEPEDIGGCKLGCLGIPEFGTDFAMQMLIDT 1211

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYS 706
            +P    +++      +G +  + +   LI          I  ++ +M       + SG +
Sbjct: 1212 KPKYFSDLIRIAGLSHGTDVWLGNAQVLIQEGKATISTAICTRDDIMIYLIGKGVESGLA 1271

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             +  + +R+  G          ++ +I    ++G+        +    K   Y F K+HA
Sbjct: 1272 FTIMESVRKGKG---------LRDEWIETMKEHGVPD-----WYIWSCKLIKYMFPKAHA 1317

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMD----------------------------- 797
            AAY +++Y+ AW K   P+ + AA  ++                                
Sbjct: 1318 AAYVMMAYRIAWYKVFQPLAYYAAYFSIRATAFSYEMMCMGKERLEYYMAEIRKKGDSAS 1377

Query: 798  ----NVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
                +  K  +  Q+      + +P  + T     F++ D ++  SLA I G+G   A  
Sbjct: 1378 KKELDTLKDMRIVQEMYARGFEFVPIDLYTAKAQRFQIVDGKLMPSLATIDGLGDKAADA 1437

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +++A+    F S +DF  R    K    +++ L   G
Sbjct: 1438 VVDAAKQGKFLSKDDFRDRTKVSKTVIDLMDDLKLFG 1474



 Score = 71.9 bits (175), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
           V L  H+  S ++G     +++ +      PAIAITD   + +  E 
Sbjct: 369 VELHCHTKMSDMDGVTDAKSLVKRAYEWGHPAIAITDHGVVQAFPEA 415


>gi|153954051|ref|YP_001394816.1| DNA polymerase III PolC [Clostridium kluyveri DSM 555]
 gi|219854664|ref|YP_002471786.1| hypothetical protein CKR_1321 [Clostridium kluyveri NBRC 12016]
 gi|146346932|gb|EDK33468.1| PolC [Clostridium kluyveri DSM 555]
 gi|219568388|dbj|BAH06372.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1439

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 159/894 (17%), Positives = 311/894 (34%), Gaps = 178/894 (19%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
              +++LV    G + L ++VS+  L +   +  R+  S + +   EGLI+     +G + 
Sbjct: 615  YHLIILVKNQIGLKNLYKMVSKSNL-NYFFKKPRMPKSIIIK-HREGLIIGGACEAGQVY 672

Query: 157  RAFFFNSSQVAEKRLLTFKKLFG-----DRLYV---NLQRHRGYDRYRESQVVQLAYTHE 208
            R      S    K +L F          + L++    L +     +    ++  L   + 
Sbjct: 673  REVLGGKSDSELKDILDFYDYLEIQPVENNLFMVRNGLVKDIEQLKDINRRICDLGVINN 732

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
            +P++AT +  F+  +D     ++MA    +           P  Y +   EM+  F  L 
Sbjct: 733  IPVIATGDVHFMDPKDEIFRRIIMAGQGYSDADN------QPPLYFRTTEEMLFEFEYLG 786

Query: 269  E--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
            E  A E  +E   + + +++   PI       + +  ++E +N    K            
Sbjct: 787  EKKAREVVIENTNKIADMIEEVKPIPDETFPPKIEGAEEEIKNMTLKKVH---------- 836

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
            +I      +  ++RLD ELN I    ++  +LI    ++ +  +   VG  RGS   S  
Sbjct: 837  SIYGDNLPEIVQERLDKELNSIINNGYAVLYLIAQKLVEKSYNDGYLVG-SRGSVGSSFV 895

Query: 387  AYALTITDIDPLR-----------------------------------------FSLLFE 405
            A    IT+++ L                                            + FE
Sbjct: 896  ATMSNITEVNGLPPHYVCPNCKYSEFFTDGSIGSGADLPDKSCPDCGEKLMKDGHDIPFE 955

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA- 464
             FL       PD D++F  + +  V +Y +  +G + V +  T G++  K A   V +  
Sbjct: 956  TFLGFAGDKEPDIDLNFSGEYQPVVHKYTEVLFGKDHVFRAGTIGTIAEKTAYGYVKKYI 1015

Query: 465  ----LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                + +P ++++RL K                                          G
Sbjct: 1016 AEKNMVLPQAEIERLTK---------------------------------------GCTG 1036

Query: 521  LYRHASTHAAGIVIGDRP--LSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLG 575
            + R    H  G+++      +    P+      +   +  T F+   I    L+K D LG
Sbjct: 1037 IKRTTGQHPGGVMVVPDDNDIHNFTPVQHPADDNSTEIITTHFDYHSI-SGRLLKLDILG 1095

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
                T+L+   D        +D   IP  + +   L T+   LG+ + E         G+
Sbjct: 1096 HDDPTVLRMLQDLTG-----LDPKTIPLGEPKVMSLFTSPEALGVSEKEID-CSVGTYGL 1149

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQ 694
                 + +  ++    P    ++V  +   +G +  ++     I       Q  I  ++ 
Sbjct: 1150 PEFGTKFVRQMLMDTHPKTFADLVRISGLSHGTDVWLNNAQYYIKEGYTTLQDCIACRDD 1209

Query: 695  VMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            +M       L    S +  +++R+   K +KEE +              + +    N + 
Sbjct: 1210 IMIYLIQKGLPPKTSFTIMEMVRKG--KGLKEEHEAI------------MREHTVPNWYI 1255

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK---------- 801
               K   Y F K HA AY +++ + A+ K +YP  + AA  T+  +  +           
Sbjct: 1256 ESCKKIKYMFPKGHAVAYVMMAVRIAYFKVYYPKAYYAAYFTVRANEFDADIVVQGEGAI 1315

Query: 802  -----------------------IKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYY 837
                                   I + C +  +  I+ +      +  + F + ++ I  
Sbjct: 1316 KKKMDELYSQGNNLTQKDKGLLTILELCYEMNKRGIKFLKVDLYKSHAIKFLIEESGIRV 1375

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             + ++ G+G   A++I++A  +  F S ED   R    K     L +    G L
Sbjct: 1376 PMNSLAGLGENAAKNIVKAREEGEFISKEDLRIRAKVSKTVIDTLNNHGCLGNL 1429



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 1/94 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S ++++ + A     AIAITD   + +  E  + A    I+ I 
Sbjct: 341 VELHLHTQMSAMDAVSSASDLIKRAALWGHKAIAITDHGVVQAFPEAMEAAKKNNIKVIY 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G +  + + D + +   G         ++  + T
Sbjct: 401 GIEAYM-VDDGIPIAINGDEKTLDDTFVIFDIET 433


>gi|3930523|gb|AAC80434.1| DNA polymerase III [Thermotoga maritima]
          Length = 842

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 223/767 (29%), Positives = 345/767 (44%), Gaps = 128/767 (16%)

Query: 216 NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-----TPDHYLKNRSE-----MVSIF- 264
           +       + E  D L+   +      +D P       TP  YL    +     M  IF 
Sbjct: 64  DGRIFVARNREEFDSLVRYYNGETHEIEDIPVFQESELTPVRYLDASEKKASIFMRKIFG 123

Query: 265 -----SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
                   PE  E+  +I    ++ L+V      RF     +       NEL  K    L
Sbjct: 124 LDEDVQGFPEKCEDVADILNAEAYDLRV----NHRFPTPPKN------WNELLIKKAEPL 173

Query: 320 EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                          ++Y  RL  EL VI R  F+ Y   V   ++ AKK  I VGPGRG
Sbjct: 174 --------------GEEYISRLKRELEVIKRKGFTPYIYTVEKVVEIAKKMGIKVGPGRG 219

Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
           S  GS+ AY   IT++DP+++ LLFERFLN +R   PD D+D    RR ++I+ +   + 
Sbjct: 220 SAVGSLVAYLCGITEVDPIKYDLLFERFLNEERQEPPDIDVDVEDRRRKDLIKELSKSF- 278

Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             +V Q+ TFG+L  K+                                           
Sbjct: 279 --QVYQVSTFGNLTEKS--------------------------------------LKNLI 298

Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
            + L D S++   EI + + GL  H S HAAG+VI + PL    P+      D+P+T ++
Sbjct: 299 NSVLPDASLEEKNEIYKTVYGLPHHPSVHAAGVVISENPL----PLPTRTEEDIPITDYD 354

Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
           M  +++ G++K D LGLKTL+ ++     +             + D +TYHL++   TLG
Sbjct: 355 MYDLQEIGVVKIDILGLKTLSFMKDFKKEI-----------FDYSDEKTYHLISKGKTLG 403

Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPL 677
           +FQLE    R+    + P  ++++  L++L RPGP+ +   V+++N KN           
Sbjct: 404 VFQLEGLQARKLCRRISPRNMDELSILLALNRPGPLRSGLDVMFSNSKNVP-------AF 456

Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
              M  ET+GV+IYQEQ+M++A   +G S +EAD+LRRA+ KK +E+M+   E+   G  
Sbjct: 457 FRKMFPETRGVLIYQEQIMRLAM-FAGLSGTEADILRRAIAKKEREKMEPLLEKMKKGLL 515

Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
           + G+    A  I E+L  F+ Y FNKSH+ AYA I+YQTA++K H+  EF          
Sbjct: 516 EKGM--ENAEQILEILLNFSSYAFNKSHSVAYAHITYQTAYLKAHHLEEFFKLYFAYNSS 573

Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
           +  KI    Q+ R    ++ PP +N    D       +Y  L  +KGVG T    I +  
Sbjct: 574 DAGKIFLAVQELRNEGYRVHPPDINISGKDLVFHGKDVYLPLTVVKGVGVTLVEQIEKIR 633

Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
              P  S+ +   RV    + R V+ESL+ AGA D    +R   L+ L+   +      +
Sbjct: 634 ---PVSSVRELQERV--TGVPRNVVESLITAGAFDKLYENRKLALEELNKRVEKDILEIR 688

Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
                  ++F  +    S  I +   +        E E++ +GF  +
Sbjct: 689 -------SLFGEKVEQESSNIKIGDIT--------ELEEKSMGFPLT 720



 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 16 VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
          V S YS     +    +   +      ++ + D  N  +A++F+      G+ P+ G  
Sbjct: 5  VISPYSFDGSVVRFEKLALLLKRKGLKSVILADR-NFHAAVKFNTIMRKHGLIPVHGLW 62


>gi|325685948|gb|EGD28011.1| DNA polymerase III PolC [Lactobacillus delbrueckii subsp. lactis DSM
            20072]
          Length = 1402

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 180/946 (19%), Positives = 321/946 (33%), Gaps = 187/946 (19%)

Query: 57   EFSQKACAAG------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE-GY 109
              +Q A A G      +        + D+      +N           I +L    + G 
Sbjct: 527  RANQDAEATGYLMFKLLDAFNDKYQEDDLGKMNDYSNGEGYKRARPTHITVLAQNQKPGL 586

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            + L ELVS   +    K  +R   S L+ +   GL+  +  S G +  A      + A+K
Sbjct: 587  RNLYELVSLAGIKYNFKG-LRTPKSELRRLHA-GLLYGSSCSQGEVFIAMMQKGYEEAKK 644

Query: 170  RLLTFK--KLFGDRLYVNLQRHR-----GYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
            +   +   ++     Y +L                + + +L      P+VAT+++ ++ +
Sbjct: 645  KAEFYDFLEIQPPSNYSSLIADGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDK 704

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
             +    DVL+A          +R +  PD +     EM+  FS + E +   V I+    
Sbjct: 705  HEAIYRDVLLAAQRG----NPNRNKQHPDLHFYTTQEMLDEFSFMGEDIAKEVVISNPNK 760

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                +   + P   E     I    E  +R                       + + RLD
Sbjct: 761  INAMIDEGVQPVQDESFPPKIPHTAER-VRKLTYDKAHELYGD------PLPDNIQARLD 813

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF-- 400
             EL+ I    +   +LI    +  + K+   VG  RGS   S+ A  + IT+I+P+    
Sbjct: 814  RELDAIIGNGYGVVYLISQMLVAKSVKDGYLVG-SRGSVGSSLVATMMGITEINPMPPHY 872

Query: 401  ---------------------------------------SLLFERFLNPDRMSMPDFDID 421
                                                   ++ FE FL      +PD D++
Sbjct: 873  RCPKCKQSEFFENGEYASGFDLPDKKCPDCQVMMVKDGQNIPFETFLGFHGDKVPDIDLN 932

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  D +     +++  +G     +  T G+L  K A+                       
Sbjct: 933  FSGDYQPVAHNFIRVMFGPNHSFKAGTVGTLADKKAIGYAKHYQDEHP------------ 980

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPL 539
                              E ++ +  VDRL   +  + G+      H AGIV+   D+ +
Sbjct: 981  ------------------EIKMNNAEVDRL---AIGVTGVKATTGQHPAGIVVLPDDKDI 1019

Query: 540  SQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
             +L P+         +   T F+   I    L+KFD LG +  T+++   D        +
Sbjct: 1020 YELTPLQYPSDDISKEWKTTHFDFHQIHD-NLLKFDILGHQDPTMIRMLQDL-----SGI 1073

Query: 597  DLSLIPFDDHETYHLLT--------------TKGTLGIFQLESSGMRQALEGMQPDCIED 642
            D   IP DD +   L +                GTLG+ +  +  +R  LE  +P    +
Sbjct: 1074 DPLTIPTDDPKVMSLFSSPEALGVTPEQINSKTGTLGLPEFGTPFVRGMLEETKPSTFAE 1133

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++ +  L     +          NG  K+ S+    D ++ +     + +E         
Sbjct: 1134 LLQISGLSHGTDVWLGNAEELINNGTCKLKSVIGCRDNIMTDLIRWGVKEE--------- 1184

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
               + S  + +R+  G    E M   KE          I      +  ++      Y F 
Sbjct: 1185 --VAFSTMETVRKGKGI-SDENMAVLKEN-------KNIPDWYIPSCLKI-----KYMFP 1229

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------------------- 800
            K+HAAAY +++ + AW K +YP  + AA  ++  D V+                      
Sbjct: 1230 KAHAAAYILMALRVAWFKVYYPEIYYAAYFSVRADKVDLEAMSRGKNTVVALINRIKEKG 1289

Query: 801  ----KIKK-------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGT 847
                K++K          +A +  I      +N      +K+ D         A+ G+G 
Sbjct: 1290 TAATKLEKDLQTYMELVNEAIERGINFKMVDINESEATTYKIVDKHTILAPFNAVDGLGD 1349

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE-SLVFAGALD 892
            + A+ I+ A ++ PF S ED   R    +      E + V  G  D
Sbjct: 1350 SAAKQIVAARSEAPFLSKEDLQVRGKVSQKIMDFFENNNVLEGMPD 1395



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 6/111 (5%)

Query: 1   LTQYLEKSPSF------VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           LT+++ +  ++      V L VH++ S L+    + +I+       QPA+AITD   L +
Sbjct: 280 LTEHVGRQEAYQGEEKHVELHVHTNMSQLDATSDVADIIKTAKKFGQPAVAITDHAGLQA 339

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                +     G++ I+G + ++     L + N     +     ++  V T
Sbjct: 340 LPNAFEAGKKTGMKVIMGLEANMVEDHGLLVLNPASMKYEDQEFVIFDVET 390


>gi|300812566|ref|ZP_07092983.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300496439|gb|EFK31544.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 1402

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 181/946 (19%), Positives = 322/946 (34%), Gaps = 187/946 (19%)

Query: 57   EFSQKACAAG------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE-GY 109
              +Q A A G      +        + D+      +N           I +L    + G 
Sbjct: 527  RANQDAEATGYLMFKLLDAFNDKYQEDDLGKMNDYSNGEGYKRARPTHITVLAQNQKPGL 586

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            + L ELVS   +    K  +R   S L+ +   GL+  +  S G +  A      + A+K
Sbjct: 587  RNLYELVSLAGIKYNFKG-LRTPKSELRRLHA-GLLYGSACSQGEVFIAMMQKGYKEAKK 644

Query: 170  RLLTFK--KLFGDRLYVNLQRHR-----GYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
            +   +   ++     Y +L                + + +L      P+VAT+++ ++ +
Sbjct: 645  KAEFYDFLEIQPPSNYSSLIADGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDK 704

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
             +    DVL+A          +R +  PD +     EM+  FS + E +   V I+    
Sbjct: 705  HEAIYRDVLLAAQRG----NPNRNKQHPDLHFYTTQEMLDEFSFMGEDIAKEVVISNPNK 760

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                +   + P   E     I    E  +RN                      + + RLD
Sbjct: 761  INAMIDEGVQPVQDESFPPKIPHTAER-VRNLTYDKAHELYGD------PLPDNIQARLD 813

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF-- 400
             EL+ I    +   +LI    +  + K+   VG  RGS   S+ A  + IT+I+P+    
Sbjct: 814  RELDAIIGNGYGVVYLISQMLVAKSVKDGYLVG-SRGSVGSSLVATMMGITEINPMPPHY 872

Query: 401  ---------------------------------------SLLFERFLNPDRMSMPDFDID 421
                                                   ++ FE FL      +PD D++
Sbjct: 873  RCPKCKQSEFFENGEYASGFDLPDKKCPDCQVMMVKDGQNIPFETFLGFHGDKVPDIDLN 932

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  D +     +++  +G     +  T G+L  K A+                       
Sbjct: 933  FSGDYQPVAHNFIRVMFGPNHSFKAGTVGTLADKKAIGYAKHYQDEHP------------ 980

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPL 539
                              E ++ +  VDRL   +  + G+      H AGIV+   D+ +
Sbjct: 981  ------------------EIKMNNAEVDRL---AIGVTGVKATTGQHPAGIVVLPDDKDI 1019

Query: 540  SQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
             +L P+         +   T F+   I    L+KFD LG +  T+++   D        +
Sbjct: 1020 YELTPLQYPSDDISKEWKTTHFDFHQIHD-NLLKFDILGHQDPTMIRMLQDL-----SGI 1073

Query: 597  DLSLIPFDDHETYHLLT--------------TKGTLGIFQLESSGMRQALEGMQPDCIED 642
            D   IP DD +   L +                GTLG+ +  +  +R  LE  +P    +
Sbjct: 1074 DPLTIPTDDPKVMSLFSSPEALGVTPEQINSKTGTLGLPEFGTPFVRGMLEETKPSTFAE 1133

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++ +  L     +          NG  K+ S+    D ++ +     + +E         
Sbjct: 1134 LLQISGLSHGTDVWLGNAEELINNGTCKLKSVIGCRDNIMTDLIHWGVKEE--------- 1184

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
               + S  + +R+  G    E M   KE          I      +  ++      Y F 
Sbjct: 1185 --VAFSTMETVRKGKGI-SDENMAVLKEN-------KNIPDWYIPSCLKI-----KYMFP 1229

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------------------- 800
            K+HAAAY +++ + AW K +YP  + AA  ++  D V+                      
Sbjct: 1230 KAHAAAYILMALRVAWFKVYYPEIYYAAYFSVRADKVDLEAMSRGKNTVVALINRIKEKG 1289

Query: 801  ----KIKK-------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGT 847
                K++K          +A +  I      +N      +K+ D         A+ G+G 
Sbjct: 1290 TAATKLEKDLQTYMELVNEAIERGINFKMVDINESEATTYKIVDKHTILAPFNAVDGLGD 1349

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE-SLVFAGALD 892
            + A+ I+ A ++ PF S ED   R    +      E + V  G  D
Sbjct: 1350 SAAKQIVAARSEAPFLSKEDLQVRGKVSQKIMDFFENNNVLEGMPD 1395



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 6/111 (5%)

Query: 1   LTQYLEKSPSF------VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           LT+++ +  ++      V L VH++ S L+    + +I+       QPA+AITD   L +
Sbjct: 280 LTEHVGRQEAYQGEEKHVELHVHTNMSQLDATSDVADIIKTAKKFGQPAVAITDHAGLQA 339

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                +     G++ I+G + ++     L + N     +     ++  V T
Sbjct: 340 LPNAFEAGKKTGMKVIMGLEANMVEDHGLLVLNPASMKYEDQEFVIFDVET 390


>gi|256847046|ref|ZP_05552492.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            coleohominis 101-4-CHN]
 gi|256715710|gb|EEU30685.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            coleohominis 101-4-CHN]
          Length = 1448

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 159/931 (17%), Positives = 307/931 (32%), Gaps = 193/931 (20%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  MT+ G         + LL     G + + +LVS   +     +  RI  S L+    
Sbjct: 604  NKHMTDNGAYRHARPFHVTLLAKNQAGLKNMYKLVSLANVK-YFYRVPRIPRSVLERY-R 661

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVV 201
            EGL++ +  SSG +  A        A+++   +        Y+ +Q    Y    E +V+
Sbjct: 662  EGLLIGSACSSGEVFTAMMQKGYAEAKQKAAFYD-------YLEVQPKPNYAPLLEQKVI 714

Query: 202  --------------QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                          +L       +VAT ++ +L+ ED     +L+          K +  
Sbjct: 715  SSEHHLESIIKNMIKLGDELGKTVVATGDAHYLNPEDAIYRKILINSQGGANPLNKTKR- 773

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              PD + +   EM+  F  L         +ENT +IA       Q  +P+  +       
Sbjct: 774  --PDVHFRTTDEMLQEFDFLGSDLAHQIVVENTHKIADEVD---QEISPVEDKLYTPHMK 828

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              ++E ++     A       L           +    R+  EL+ I +  FS  +LI  
Sbjct: 829  GAEQEIQDRTWATAKKWYGDPL----------PKLVYDRVKLELDSIVKNGFSVIYLIAQ 878

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------- 399
              +  + K+   VG  RGS   SV A    IT+++PL                       
Sbjct: 879  RLVAKSNKDGYLVG-SRGSVGSSVVATLSGITEVNPLPPHYRCPHCQYNHFYTKGEYSSG 937

Query: 400  -------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + F+ FL      +PD D++F  D +     Y++  +G 
Sbjct: 938  YDLPDKKCPKCGTLMIKDGHDIPFQTFLGFKGNKVPDIDLNFSGDYQPIAHNYMKVLFGE 997

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            + V +  T G++  K A   V +A +    Q                          FR 
Sbjct: 998  KNVFRAGTIGTVADKTAYGYV-KAYERDTDQ-------------------------EFRG 1031

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRSD---LPV 555
            A            +++   G+ R    H AGI+I      +    P+             
Sbjct: 1032 AEED--------RLAKGATGVKRTTGQHPAGIIIVPDDMDIYDFTPVQYPADDQNAAWET 1083

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T F+   I    ++K D LG    T+++   D       +++   IP DD     L ++ 
Sbjct: 1084 THFDFHSIHD-NILKMDILGHDDPTMIRALQDL-----SRINPQTIPMDDPGVMSLFSSP 1137

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI-VSI 674
              LG+ + + +  +    G+       +  ++    P     ++  +   +G      + 
Sbjct: 1138 KALGVTEEQINS-KTGTLGLPEFGTRFVRGMLEDTHPKNYSQLLQISGLSHGTGVWLDNA 1196

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLS-----GYSLSEADVLRRAMGKKIKEEMDKQK 729
              LI   +     VI  ++ +M             + + E+    R +  + + +M    
Sbjct: 1197 QELIKDGVATIANVIGCRDNIMTDLIHYGLDSETSFQVMESVRHGRGIPDEWQAKMH--- 1253

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                         +      +        Y F ++HA AY +++ + A+ K ++P+ +  
Sbjct: 1254 -------------EANVPQWYIDSCLKIKYMFPRAHATAYVLMALRIAYFKVYFPLTYYC 1300

Query: 790  ASMTLEMDNVEKIK---------------------------------KFCQDARQFNIQI 816
            A  ++  D+ + +                                  +   +  +   + 
Sbjct: 1301 AFFSVRADDFDVVAMSRGKNAVKAAMKEITDKGNDASAKEKSLLTILELANEMLERGYKF 1360

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      ++ +    +     AI G+G   A+ I+ A  +KPF S ED   R    
Sbjct: 1361 KMVDLERSDASNWLIDGKTLIAPFRAIPGLGMNVAKQIVAAREEKPFLSKEDLAERGKVS 1420

Query: 876  KLNRRVLES-LVFAGALDCFGYSRMQLLQSL 905
            +     +++  V  G  D    +++ L   L
Sbjct: 1421 QTIIEFMDANNVLEGLPD---QNQLSLFDQL 1448



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-----CAAG 66
           + L +H++ S ++   S+++ + +     QPAIAITD   +    E  + A         
Sbjct: 337 IELHLHTNMSTMDATNSISDYVKQAIKWGQPAIAITDHAGVQGFPEAYKAAYDGKHQKYN 396

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           I+ I G + ++       + N+          ++  V T
Sbjct: 397 IKMIYGLEANVVDDGIPLVYNENHDHLLNSTYVIFDVET 435


>gi|260890306|ref|ZP_05901569.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
 gi|260859926|gb|EEX74426.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
          Length = 1151

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 170/911 (18%), Positives = 327/911 (35%), Gaps = 175/911 (19%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS----GPI 155
            ++LV    G + L ELVSR  +   G +  RI  + L  +    LI  +  +S    G +
Sbjct: 307  MILVKNQAGLRDLYELVSRSNIEFFGMRRPRIPKTLLNSMRENLLIASSASASERNKGEL 366

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRES----------------Q 199
               +       AEK  +  K  F D  Y+ +  H  Y    E                  
Sbjct: 367  VNLYLRG----AEKDDIEEKARFYD--YIEIHPHTNYADMVEKTSKEIESYDIIKEMNKY 420

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-----KDRPRVTPDHYL 254
              +L  +    +VAT ++ +L E +    +VL+  + +   ++     +         Y 
Sbjct: 421  FYELGKSQNKIVVATGDTHYLEEREAINRNVLLLGSGTMWKTETSEGVRGYEFFDRKLYF 480

Query: 255  KNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            K   E++  F+ L E  A E  VE   + + +++   PI   F   + +      E+E+R
Sbjct: 481  KTTEEILESFNYLGEEAAQEVVVENTHKINDMIEQVRPIPTGFYPPKIEGA----EDEVR 536

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                + L+    +          D ++R++ ELN I +  F+  +LI    +  +     
Sbjct: 537  KMTYSKLKELYGENIDP------DLKERVEKELNSIIQNGFAVLYLIAQKLVHKSVDAGY 590

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPL---------------------------------- 398
             VG  RGS   S+ AY + IT+++ L                                  
Sbjct: 591  LVG-SRGSVGSSIVAYLMGITEVNGLYPHYRCPKCKHTEFMNEEGSGVDYPDKNCPECGT 649

Query: 399  -----RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
                   ++ FE F+  +   +PD D++F  + + E+ +Y +  +G + V +  T  +L 
Sbjct: 650  KYIKDGHAIPFEVFMGFNGDKVPDIDLNFSGEYQGEIHKYTEELFGSDNVFRAGTISTLA 709

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             K A   V +                         L+ +      +E          ++ 
Sbjct: 710  EKNAFGYVKKY------------------------LEEVEGTPEIKE------RKAEVMR 739

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYR---DVRSDLPVTQFNMKWIEKAGL 568
            I++  EG  +    H  G+++  +   +    P+ R   D+++    T F+   +++  L
Sbjct: 740  IAKGCEGARKTTGQHPGGMIVVPKDKSIYDFCPIQRPANDMKATSKTTHFDYHVMDEQ-L 798

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            +K D LG    T L+   D        VD+  IP DD E   L +    L +   E  G 
Sbjct: 799  VKLDILGHDDPTTLRILQDLTG-----VDIYTIPLDDKEVMSLFSGTEALSVTPDEI-GS 852

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQG 687
                 G+       +  ++   RP     +V  +   +G +  + +    +   +     
Sbjct: 853  PTGTSGIPEFGTSFVKQMLVDTRPKTFAELVRISGLSHGTDVWLNNAQDYVRSGIATLSQ 912

Query: 688  VIIYQEQVMQ---IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            +I  ++ +M       L    + S  + +R+    K +E+  +             + + 
Sbjct: 913  IITVRDDIMNKLIDDGLDKSLAFSIMEFVRKGQPTKNREKWQEY---------SKTMKEH 963

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---- 800
                 +    +   Y F K HA AY +++ + A+ K HYP+EF  A +  ++ + +    
Sbjct: 964  GVEQWYIDSCEKIKYMFPKGHAVAYVMMAVRIAYFKVHYPIEFYTAFLNRKVGDFKMTTM 1023

Query: 801  ----------KIK------------------KFCQDARQFNIQIMPPSVNTPCVD-FKVG 831
                      K++                  +   +     I++    +       F + 
Sbjct: 1024 FRPVEELKRAKMEMDRKGNLNAKEKQELFLYEILIEMHYRKIELEQIDIYKSEAKLFTIQ 1083

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            D +I   L A+ G+G   A +I+       F S+ED   R    KLN+ ++E +   G L
Sbjct: 1084 DGKIRMPLIAMDGLGEAVAENIVSERKV-DFLSIEDLVKRT---KLNKTIVELMKEYGCL 1139

Query: 892  DCFGYSRMQLL 902
                 +  Q L
Sbjct: 1140 KDLSATNQQTL 1150



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H++ S + G +S+ +   +        IA+TD   + S   F+ K      + I 
Sbjct: 32  IELHAHTNMSEMSGVMSIKDYAKRAKEFGHSGIAVTDYGVVHS-FPFAFKEANEDFKVIF 90

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G +  +   +   +TN           +V  + T
Sbjct: 91  GMEAYVVDDEQDLITNPKDKMIEDEIYVVFDIET 124


>gi|302668622|ref|YP_003833070.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
 gi|302397586|gb|ADL36488.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
          Length = 1490

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 167/896 (18%), Positives = 310/896 (34%), Gaps = 171/896 (19%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             ++L+     G   L  L+S+ ++ D   +   I  S L +   EGLI+ +    G +  
Sbjct: 650  HVILIAKDTCGRTNLYTLISKSHI-DYYYRKPIIPKSELIKY-REGLIVGSACCLGELYE 707

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-----------RYRESQVVQLAYT 206
            A     S     +++ F      +   N +     +           R    ++V+L   
Sbjct: 708  AVREGRSDEEIAKIVDFYDYLEIQPIANNKFMIANEKMEKINSEEDLRDINRKIVKLGEH 767

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
            +  P+VAT +  FL+ ED     +++++                  YL+   EM+  F  
Sbjct: 768  YNKPVVATCDVHFLNPEDEIYRTIILSMKKMDKED-------PAPLYLRTTEEMLQEFEY 820

Query: 267  LPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
            L E       +EN+ +I   C  I  V     P  IE          +  LR      + 
Sbjct: 821  LGEEKAREVVIENSNKIFDWCEKISPVRPDKCPPVIE--------NSDELLRKICYDKMH 872

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                              +RL+ EL  I    ++  ++I    +  + ++   VG  RGS
Sbjct: 873  EMYGDPL------PPIVEERLEKELKSIIGNGYAVLYIIAQKLVWKSLEDGYLVG-SRGS 925

Query: 381  GAGSVTAYALTITDIDPL------------------------------------------ 398
               S  AYA  IT+++ L                                          
Sbjct: 926  VGSSFVAYAAGITEVNSLAPHYLCPECQYSEFDSEDVKKYAGNSGCDMPDKRCPRCGALM 985

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                F + FE FL       PD D++F  + + +  +Y +  +G  +  +  T  S+  K
Sbjct: 986  KKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHKYTEVIFGDGQTFRAGTIQSVADK 1045

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V +                                    E          +  ++
Sbjct: 1046 TAYGYVKKYF----------------------------------EQAEKTKRSAEIERLA 1071

Query: 516  QKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIK 570
            +  +G+ R    H  GIV+      +    P+          +  T F+   I+   L+K
Sbjct: 1072 EGCKGVRRGTGQHPGGIVVLPVGENIYSFTPIQHPANDMDTPIITTHFDYHKIDH-NLLK 1130

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
             D LG    T+++   D        +D   +P DD     L      LGI   + SG + 
Sbjct: 1131 LDILGHDDPTMIRFLND-----CTGLDPKDVPLDDRLVMTLFMNTTALGITPEQISGTKL 1185

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVI 689
               G+     +  + +V   +P    +++  +   +G    + +   LID         I
Sbjct: 1186 GCLGLPEFGTDFAMNMVIDAKPQSFSDLIRISGLSHGTGVWLGNAKDLIDSGAATLSSCI 1245

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
              ++ +M +  +  G   SE+  +  A+ K    ++ K KE       ++ + K +    
Sbjct: 1246 CCRDDIM-VYLIHKGLDPSESFKIMEAVRK---GKVAKGKENNWPNWEQDMMDKGVPE-W 1300

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD--NVEKI----- 802
            +    K  +Y F K+HAAAY +++++ A+ K + P  F AA  ++     N E++     
Sbjct: 1301 YMGSCKKIEYMFPKAHAAAYVMMAWRIAYFKIYIPQAFYAAWFSIRAKALNYERMFQGKA 1360

Query: 803  --------------------------KKFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRI 835
                                       +  ++  +  I++ P  +       FKV  ++I
Sbjct: 1361 TLKRYMEEYRKKGDALTAVEEDELMAMRLAEEMYERGIEVEPIDIYKAESRTFKVVGDKI 1420

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              SL +++ +G   A  I+EA+ + PF S +DF SR    ++    +  L   G L
Sbjct: 1421 MPSLVSLERLGEKAADQIVEAAKEGPFTSRDDFKSRTKCPQVVVDNMTRLGLLGNL 1476



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 9/108 (8%)

Query: 2   TQYLEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           T+ ++ +P   V L  H+  S ++   S  +I+ +      P IAITD   +    E   
Sbjct: 352 TKRVDNAPRKRVELHCHTKMSDMDAVSSAEDIILQAYKWGMPGIAITDHAVVQGLTE--- 408

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                G   I   +      D  K           V   V +V+  +G
Sbjct: 409 -----GDHFIKEYKGKHKDCDIDKFKLLLGVEGYLVDDFVKIVTNNKG 451


>gi|167759386|ref|ZP_02431513.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704]
 gi|167662943|gb|EDS07073.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704]
          Length = 1499

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 169/959 (17%), Positives = 327/959 (34%), Gaps = 189/959 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +      I  +                N           +++L     G   L  L
Sbjct: 618  VKFVEMLKERNINDLARLNQ-------FGSNNADAIKKLPTYHVIILALNEVGRVNLYTL 670

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL---- 171
            +S+ +L D   +  RI  S L +   EGL++ +   +G + +A     S+    R+    
Sbjct: 671  ISKSHL-DYYARRPRIPKSELSKY-REGLMVGSACEAGELYQAILNEKSEERIARIVNFY 728

Query: 172  --LTFKKLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
              L  + L  +R  +        +     +    ++V L      P+V T +  F+  ED
Sbjct: 729  DYLEIQPLGNNRFMIASDRIENVQSEEDLKKINKKIVDLGDRFNKPVVGTCDVHFMDPED 788

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCS 282
                 ++MA          D        YL+   EM+  F  L   +A E  ++   + +
Sbjct: 789  EVYRRIIMA---GKGFGDADE---QAPLYLRTTDEMLEEFEYLGSTKAKEIVIDNPCKIA 842

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
             + +   P+ P     +C  +  + +  LR            +             +RL+
Sbjct: 843  DMAEKITPVRP----DKCPPVIPDSDKMLREICYNKAHSMYGEEL------PPIVTERLE 892

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             ELN I    F+  ++I    +  + ++   VG  RGS   S  A    IT+++PL    
Sbjct: 893  RELNSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFVATMAGITEVNPLSPHY 951

Query: 400  ------------------------------------------FSLLFERFLNPDRMSMPD 417
                                                      F + FE FL       PD
Sbjct: 952  YCKHCHYSDFESEEVRAFAGGCGWDMPDKNCPVCGEKLVKDGFDIPFETFLGFKGNKEPD 1011

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  D +    +Y +  +G  +  +  T G+L  K A   V                
Sbjct: 1012 IDLNFSGDYQSNAHKYTEVIFGAGQTYRAGTVGTLADKTAFGYVKNYY------------ 1059

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD- 536
                                 R  R  +  +DR++   Q   G+ R    H  GI++   
Sbjct: 1060 -------------------EERGQRKRNCEIDRIV---QGCTGIRRSTGQHPGGIIVLPL 1097

Query: 537  -RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
               ++   P+         D+  T F+   I+   L+K D LG    T+++   ++++  
Sbjct: 1098 GEEINSFTPVQHPANDMTTDIVTTHFDYHSIDH-NLLKLDILGHDDPTMIKTLEEYISSP 1156

Query: 593  GVKVDLSLI---------PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
             ++ + +           P DD     L      LGI   +  G      G+     + +
Sbjct: 1157 ALENEYNESDNRFVATKIPLDDKGVMSLFHDTSALGIKPDDIGGCPVGCLGIPEFGTDFV 1216

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQ-- 700
            + +V   +P  + +++  +   +G +  ++    LI          I  ++ +M      
Sbjct: 1217 VQMVVDTQPKTLSDLIRISGLSHGTDVWLNNAQELIKSGKATISTAICTRDDIMTYLINK 1276

Query: 701  -LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
             + S  S +  + +R+  G              ++   +  + +    + +    K   Y
Sbjct: 1277 GMDSELSFTIMEKVRKGKG--------------LTDDFEKSMKEAGVPDWYIWSCKQIKY 1322

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS---------------------------- 791
             F K+HAAAY +++Y+ A+ K +YP+ +  A                             
Sbjct: 1323 MFPKAHAAAYVMMAYRIAYCKINYPLAYYGAYFGIRADAFSYEIMCRGKDVLQHYIDEYN 1382

Query: 792  -----MTLEMDNVEKIKKFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGV 845
                 ++ +  +  K  K  Q+      + MP  +       F + D ++   L++I G+
Sbjct: 1383 SRSATLSKKEQDTMKDMKIVQEMYARGYEFMPMDIYKAQATKFLIIDGKLMPPLSSIDGM 1442

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQ 903
            G   A  + EAS D P+ S +DF  R    K ++ V++ +V  G L D    +++ L  
Sbjct: 1443 GEKAAEAVAEASKDGPYLSRDDFRQRT---KASKSVIDYMVELGILSDLPESNQLSLFD 1498



 Score = 71.9 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
           V L  H+  S ++G   + +++ +       AIAITD   + +  + 
Sbjct: 373 VELHCHTKMSDMDGVSEVKDLVKRAHDWGHKAIAITDHGVVQAFPDA 419


>gi|259503120|ref|ZP_05746022.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041]
 gi|259168986|gb|EEW53481.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041]
          Length = 1444

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 162/948 (17%), Positives = 315/948 (33%), Gaps = 178/948 (18%)

Query: 55   ALEFSQKA-CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
              +F + A     I+ +      +   D  K              + LL     G + L 
Sbjct: 579  LYKFLKDAEKRYEIRYVDELNQHMAENDAYK--------HARPFHVTLLAQNQAGLKNLF 630

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +LVS   +     +  RI  + L +   EGL++ T  SSG +  A        A +R   
Sbjct: 631  KLVSLSNVR-YFHRVPRIPRTVLTKY-REGLLLGTACSSGEVFTAMMEKGYAEALRRARY 688

Query: 174  FKKL---FGDRLYVNLQRHRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYE 226
            +  +           L+ H   DR +   ++Q    L    +  +VAT +  +++  D  
Sbjct: 689  YDYIEIQPRPNYAPLLETHVIADRDQLDDILQNMVKLGAELKKKVVATGDVHYINPHDGI 748

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARR 280
               +L+          + +    PD + +   EM+  FS L         +EN+  IA  
Sbjct: 749  YRRILINSQGGANPLNRTKR---PDVHFRTTDEMLEEFSFLGADTAKRVVVENSHAIADM 805

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
                ++   P+  +         ++E ++   N A A                 +  + R
Sbjct: 806  IDADIR---PVKDKLYTPHMKGAEQEIQDRTWNTAKAWYG----------NPLPKIVKDR 852

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ ELN I +  FS  +LI    +  + K+   VG  RGS   SV A    IT+++PL  
Sbjct: 853  VELELNSIVKNGFSVIYLIAQRLVAKSNKDGYLVG-SRGSVGSSVVATLSGITEVNPLPP 911

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + F+ FL      +PD D
Sbjct: 912  HYRCPQCRFAHFYTKGEYSSGFDLPERKCPKCGALLVKDGHDIPFQTFLGFKGNKVPDID 971

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +     Y++  +G E V +  T G++  K A   V +A +             
Sbjct: 972  LNFSGDYQSIAHNYMKVLFGEENVFRAGTIGTVADKTAYGYV-KAFERD----------- 1019

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP- 538
                          +D +FR A            ++Q   G+ R    H AGI+I     
Sbjct: 1020 --------------NDVQFRGAEED--------RLAQGATGVKRTTGQHPAGIIIVPDDM 1057

Query: 539  -LSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T F+   I    ++K D LG    T+++   D       
Sbjct: 1058 DIYDFTPVQYPADDQNAAWETTHFDFHSIHD-NILKMDILGHDDPTMIRALQDL-----S 1111

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D   IP +D     L ++   LG+ + +    +    G+       +  ++    P  
Sbjct: 1112 GIDPKTIPMNDPGVMALFSSPKILGVTEEQIQS-KTGTLGLPEFGTRFVRGMLDDTHPKN 1170

Query: 655  IDNIVVYNNRKNGKEKI-VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               ++  +   +G      +   LI         VI  ++ +M       G     +  +
Sbjct: 1171 YSQLLQISGLSHGTGVWLDNAQELIKEGTATIANVIGCRDNIMTDLIHY-GLDSETSFQV 1229

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K      + Q +    G  +  +   + +           Y F ++HAAAY +++
Sbjct: 1230 MEHVRKGRGIPDEWQSKMLKVGVPQWYLDSCLKIK----------YMFPRAHAAAYVLMA 1279

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------------------ 803
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1280 LRIAYFKVYFPLVYYCAFFSVRADDFDIVAMAHGKEAVKARMAEISNKGNDASAKEKSLL 1339

Query: 804  ---KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
               +   +  +   +     +      ++ +  + +     AI G+G + A+ I+ A  +
Sbjct: 1340 TILELANEMLERGFKFKMVDLERSDASNWLIDGDSLIAPFRAIPGLGLSVAKQIVAAREE 1399

Query: 860  KPFDSLEDFCSRVDSKKLNRRVL-ESLVFAGALDCFGYSRMQLLQSLD 906
            +PF S E+   R    +     + E+ V     D    +++ L   L 
Sbjct: 1400 RPFLSKEELADRGKVSQTLIDFMTENHVIDQLPDS---NQLDLFSDLG 1444



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H+  S ++   S+  I  + +   QPAIA+TD  N+ +  E  +      ++ I 
Sbjct: 337 IELHTHTEMSQMDATNSITEIAKQASKWGQPAIAVTDHGNVQAFPEAYKAGKKFKLKMIY 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++       + N+          ++  V T
Sbjct: 397 GMEANVVDDGVPLVYNENHAQLKDNTYVIFDVET 430


>gi|217077387|ref|YP_002335105.1| DNA polymerase III PolC [Thermosipho africanus TCF52B]
 gi|217037242|gb|ACJ75764.1| DNA polymerase III, alpha subunit, Gram-positive type [Thermosipho
            africanus TCF52B]
          Length = 1365

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 164/887 (18%), Positives = 324/887 (36%), Gaps = 182/887 (20%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             I +LV    G + L +LVS  ++    K    +  + L+E   EGLI  TG   G I  
Sbjct: 543  HITILVKDKIGLKNLYKLVSDAHVK-YFKYVPFVPKNVLKEY-KEGLIFGTGCEQGEIFE 600

Query: 158  AFFFNS--SQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATN 215
            A    S   +   + L  +  +    L   +  ++   +    ++  LA   ++P+V  +
Sbjct: 601  A-LKGSATDEEIIELLKEYDYVEIFPLSTIVSVNKEQAKEIFKRLYFLAKRLKMPVVMVD 659

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV----SIFSDLPEAL 271
            N+ +L  ED +A  VL++    +    +D        YL+   E++     IF D   A 
Sbjct: 660  NAHYLEPEDIKARHVLLSPKEKSNPHDEDLRDKDAQLYLRTTDELLKEAIEIFGDEKIAR 719

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
            E  +E   + + +++  AP+  +      D      E  +RN ++   +           
Sbjct: 720  EVVIENPNKIADMIEDIAPVKKKLHPPIIDGA----EENVRNLSLKRAKELYGDPL---- 771

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
               +   +RL+ EL  I    ++  + I    ++ A ++   VG  RGS   S  AY + 
Sbjct: 772  --PEVIEKRLEKELKSIIDNGYAVLYEIAHLIVKKANEDGYVVG-SRGSVGSSFVAYLMG 828

Query: 392  ITDIDPLRF---------------------------------------SLLFERFLNPDR 412
            IT+++PL                                          + FE F+    
Sbjct: 829  ITEVNPLPPHYICPNCKYLEFSKEVGSGYDLPDKLCPKCGTKLNKTGQDIPFEVFMGFKG 888

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
              +PD D++F  + ++    Y+   +G + V +  T  ++  ++A+  V   +++     
Sbjct: 889  DKVPDIDLNFSGEYQERAHNYIVELFGKDNVLRAGTISTIAERSAIGYVRSYMEL----- 943

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
                           +L                      + +++K+ G+ R    H  G+
Sbjct: 944  ------------KDETLNTAEQ-----------------VRLAEKVAGVKRTTGQHPGGL 974

Query: 533  VIGDRPLS--QLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            +I  + ++     P+        S++  T F  + I    L+K D LG    T+++   +
Sbjct: 975  MIVPKDMTVYDFTPIQYPANKKDSEMCTTHFAYESIHD-DLVKLDALGHDDPTMIKLLYE 1033

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALE 633
            +       VD + +P DD ET  + ++               GT+GI +  +  +++ L+
Sbjct: 1034 YTG-----VDPTTVPMDDKETLEIFSSLKPLKVRASDLGTDVGTIGIPEFGTDFVQEMLK 1088

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +P    +++ +  L       ++ + N +            +I         VI  ++
Sbjct: 1089 ETRPKSFAELVRISGLSHGT---DVWLNNAQ-----------DIIRSGKATLSEVISCRD 1134

Query: 694  QVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
             +M            +    + +R+  G   +EE D  +E  +                F
Sbjct: 1135 DIMIYLIKAGVEESTAFKIMENVRKGKGITKEEE-DLMREHNVP-------------EWF 1180

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD------------- 797
                K   Y F K+HA AY  ++++ A+ K H+P+ + AA  +++ D             
Sbjct: 1181 IESCKKIKYLFPKAHAVAYVSMAFRIAYFKVHFPLAYYAAFFSIKGDEFSIETILKGPNA 1240

Query: 798  -------------------NVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYY 837
                               N EK+ +   +        +PP +       F + DN++  
Sbjct: 1241 IKKRLTELSVKMKKDVKEKNEEKVLEAALEMYLRGFSFLPPDILKSDYRRFLIEDNKLRI 1300

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
             L  I GVG + A  I++A  +K F S+ED   R    K +   ++ 
Sbjct: 1301 PLNRIPGVGDSVAYSIVQAREEKEFTSIEDLKKRTKLSKAHITTMKK 1347



 Score = 86.6 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS  S L+  + +   + +       A+AITD  N+ S     ++A +  I+PI 
Sbjct: 261 VPLHVHSKMSDLDAIIDIKEFVKRAKEWGWKAVAITDHGNVQSIPYLYEEAKSNEIKPIF 320

Query: 72  GCQLDIDMQDNLKMTNQGKT 91
           G ++    +    + N  K 
Sbjct: 321 GTEMYFLNEPGDIVKNLDKD 340


>gi|294783112|ref|ZP_06748436.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium
            sp. 1_1_41FAA]
 gi|294479990|gb|EFG27767.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium
            sp. 1_1_41FAA]
          Length = 1449

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 170/947 (17%), Positives = 339/947 (35%), Gaps = 179/947 (18%)

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            N+F  + F +K    GI+ +       ++               ++ +I++ V T EG +
Sbjct: 576  NMF--IIFLEKYKEKGIEYLKDINKGFEVN----------VKKQSLKNIMVQVKTQEGLK 623

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG-----GSSGPIDRAFFFNSSQ 165
             + +LVS+ ++   G +  RI  S L+E   EGLI+ +       +SG +   +  +  +
Sbjct: 624  NMYKLVSKGHIKYFGNKKARIPKSVLKE-NREGLIVGSSLSAHFMNSGELVELYLRHDLE 682

Query: 166  VAEKRLLTFK--KLFGDRLYVNLQRHRG------YD--RYRESQVVQLAYTHELPLVATN 215
              E+    +   +L     Y  L    G      YD           L     + + A++
Sbjct: 683  KLEETAKFYDYIELLPKSTYNELIEKEGTGSLVSYDDVEKMNKYFYDLGKRLGILVTASS 742

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALEN 273
            N  +L E +     +L+  +    V   ++ RV    Y +   EM+  FS L E  A E 
Sbjct: 743  NVHYLDENEDIIRSILLFGSG--TVYSPNQYRVNNGFYFRTTDEMLKEFSYLGEQEAKEV 800

Query: 274  TVEIARRCSFILQVH-APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
             +    + + +++    PI   F   + D+ ++        KA      R+    +    
Sbjct: 801  IITNTNKIADMVEEGIKPIPEGFYPPKMDNAEEIVRTMTYEKAY-----RIYGDPL---- 851

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
                   RL+ ELN I    FS  +L     ++ +  N   VG  RGS   S+ A+ + I
Sbjct: 852  -PNIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGSSLVAFMMGI 909

Query: 393  TDIDPL-----------------------------------------RFSLLFERFLNPD 411
            T+++ L                                          +S+ FE F+   
Sbjct: 910  TEVNALYPHYICDNPECKHSEFIEKEGVGIDLPDKICPNCGAPLRKDGYSIPFEVFMGFK 969

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
               +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V +        
Sbjct: 970  GDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVIKYF------ 1023

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                                        E    + +   ++ + +  +G  +    H  G
Sbjct: 1024 ----------------------------EKNNLEAAKAEIVRLGRLCQGAKKTTGQHPGG 1055

Query: 532  IVIGD--RPLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            +VI      + +  P+ R    +      T ++   +++  L+K D LG    T ++   
Sbjct: 1056 MVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDEQ-LVKLDILGHDDPTTIK--- 1111

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
              L Q    +++  IP  D +T  + ++  +LG+   E  G      G+       +  +
Sbjct: 1112 --LLQEYTNMEIKDIPLADKDTLKIFSSTESLGVSPEEI-GTEIGTYGIPEFGTGFVRQM 1168

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQLLS-- 703
            +   RP     +V  +   +G    ++     +         +I  ++ +M         
Sbjct: 1169 LIDTRPTTFAELVRISGLSHGTNVWLNNAQEFVRNGQATLSQIITVRDDIMNYLIDQGLD 1228

Query: 704  -GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
               +    + +R+   KK  E  +            N + +    + +    +  +Y F 
Sbjct: 1229 NSDAFKIMEFVRKGKPKKEPENWENY---------SNMMKEKNVPDWYIESCRRIEYMFP 1279

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------KIKKFCQDAR 810
            K HA AY +++ + A+ K H P+ F AA ++ + D+ +            K+++  ++++
Sbjct: 1280 KGHAVAYVMMAMRIAYFKVHQPLAFYAAFLSRKADDFDMEVMSKGVLAKQKLEELSKESK 1339

Query: 811  -------------------QFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTA 850
                                  I+++P  +       FK+ D +I   L  I G+G    
Sbjct: 1340 LDPKKKNEQAICEIVVELEARGIELLPVDIYLSEGRKFKIEDGKIRIPLIGISGLGGAVI 1399

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +I++   +  F S+ED   R    +     L+S+   GA      +
Sbjct: 1400 ENILKEREETKFISVEDLKRRTKMSQTVANKLKSI---GAFSSLSET 1443



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L  H+  S + G   + +++ +       AIAITD + + S     +           
Sbjct: 331 VELHTHTKMSEMVGVTDVEDLIKRAKEYGHKAIAITDYSVVHSYPAAYKTGKKLSKDDNK 390

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           ++ I GC++ +   + L +TN           +V  + T
Sbjct: 391 MKVIFGCEMYMIDDEALMITNPKDKKIDEEEFVVFDIET 429


>gi|116513078|ref|YP_811985.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris SK11]
 gi|116108732|gb|ABJ73872.1| DNA polymerase III catalytic subunit, PolC type [Lactococcus lactis
            subsp. cremoris SK11]
          Length = 1635

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 155/914 (16%), Positives = 326/914 (35%), Gaps = 162/914 (17%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+ ++          + L   T EG + L ++VS   +        R+  S L E   
Sbjct: 770  NAKLVSEDSYKKVRPKHVTLYAKTQEGLKNLFKIVSFENVK-YYAGLPRLPRSVL-EANR 827

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYD-----R 194
            EGL++ +    G +  A    + +   +    +   ++F   LY +L     +       
Sbjct: 828  EGLLVGSACEVGEVFDAAINKTFEETLEIAKFYDFIEVFPPALYRSLVVGGSFKSEKELE 887

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-------VAHSTVVSQKDRPR 247
                 ++++  T   P++AT N  +L+ ED    ++++        +  +    +  +P 
Sbjct: 888  QTLKDLIKIGKTLVKPVLATGNLHYLNPEDAIYREIIVRSLGLGAEINWTQGHGEHAKPL 947

Query: 248  VTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECD-DIQ 304
              P+ + +   EM+  FS L E  A E  ++  ++ +    V  P+       +   D  
Sbjct: 948  PLPEAHFRTTDEMLEAFSFLDEKTAREIVIDNTQKMADEFDVLTPVRDDLYTPKMVFDGG 1007

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +  E  +                            RL+ EL  I    FS  ++I  + +
Sbjct: 1008 ETSEERIVRLTYEKAHE------WYGNPLPDIIDARLEKELRSILGNGFSVVYIISQELV 1061

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL-------------------------- 398
            + + +    VG  RGS   S+ A  + IT+++PL                          
Sbjct: 1062 KRSNERGYIVG-SRGSVGSSLVATMIGITEVNPLAPHYRCPECQYFECYDDGSFGSGYDM 1120

Query: 399  ---------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                              + FE FL      +PD D++F  D +      V++ +G +  
Sbjct: 1121 PDKNCPKCDHKLIKDGHDIPFETFLGFKGDKVPDIDLNFSGDDQPLAHLDVRDIFGEDYA 1180

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
             +  T G++  K A   V +  +  Y Q                                
Sbjct: 1181 FRAGTIGTVAEKTAFGFV-KGYERDYDQ------------------------------FY 1209

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQF 558
             +  +DRL   +    G+ R    H  GI++      +    P+     DV ++   T F
Sbjct: 1210 GNAEIDRL---AAGSTGVKRTTGQHPGGIIVIPNYMDVYDFSPVQFPADDVNAEWQTTHF 1266

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
            +   I    ++K D LG    T+++K           +    IP DD     L T   +L
Sbjct: 1267 DFHAIHD-NILKLDILGHDDPTMIRKLQSL-----SGIVPQDIPMDDPGVMKLFTGTESL 1320

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPL 677
            G+ + E  G++    G+        + +++  +P    +++  +   +G +    +   L
Sbjct: 1321 GLTE-EQLGVKLGTLGIPEMGTFTSMNMIAEAKPKNFADLLQISGLSHGTDVWSGNAQDL 1379

Query: 678  IDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            I   + +   VI  ++ +M       L +G + +  + +R+ M  KI  E   ++E+++ 
Sbjct: 1380 IRSGIADLSSVIGCRDDIMVYLIHKGLENGLAFTIMERVRKGMWNKIPAE---EREKYVE 1436

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               ++ + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++
Sbjct: 1437 AMREHEVPEWYIESCSKI-----KYMFPKAHAAAYIMMALRVAYFKVHHPIFYYCAWFSI 1491

Query: 795  EMDNVE---------KIKKFCQDARQFNIQIMPPSVN----------------------- 822
                 +          +K   ++ +    +      N                       
Sbjct: 1492 RATAFDIGVMGAGLEAVKSKMKEIKDKGFEATNVETNLYTTLELCNEMLERGFTFGKIDL 1551

Query: 823  --TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
              +   +F +  + +      + G+G   A+ I+ A A+  F S  +   R     +++ 
Sbjct: 1552 YRSEATEFVIDGDTLIPPFVTMDGLGENVAKQIVAARAEGEFLSKMELRKR---GGVSQT 1608

Query: 881  VLESLVFAGALDCF 894
            ++E++   G L+  
Sbjct: 1609 IIENMTNMGVLEGM 1622



 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   S ++++ + A     AIAITD   L S  E        G++ I 
Sbjct: 507 VEFHAHTNMSQMDAIPSASSLVAQAAKWGHKAIAITDHGGLQSFPEAHSAGKKNGVKIIY 566

Query: 72  GC 73
           G 
Sbjct: 567 GV 568


>gi|229105232|ref|ZP_04235881.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-28]
 gi|228678158|gb|EEL32386.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-28]
          Length = 533

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 151/423 (35%), Positives = 248/423 (58%), Gaps = 14/423 (3%)

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +L    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK K
Sbjct: 1    MLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKRK 60

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I  +HP + P+LK T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D++++
Sbjct: 61   IEYLHPDLKPILKRTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQERQ 120

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ A
Sbjct: 121  HFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMTA 180

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T 
Sbjct: 181  LLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRNIGMATV 240

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              ++E    K F+ L +FC R+ +K +  R LE+ V++G  D FG SR  L +SL    +
Sbjct: 241  TALLEERESKMFEDLFEFCLRMPAKFVTERNLEAFVWSGCFDDFGISRTNLWKSLKGALE 300

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            YA               A + G    K    +    +   +   E+  LGFY S +P   
Sbjct: 301  YAN-------------LARDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTAQ 347

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF +   E EA 
Sbjct: 348  YVKLAKELEIPSLAQAMRNKKKVQ-RAIVYITSVRVIRTKKLQKMAFITFCDQNDEMEAV 406

Query: 1031 FFP 1033
             FP
Sbjct: 407  VFP 409


>gi|321309589|ref|YP_004191918.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801433|emb|CBY92079.1| DNA polymerase III, alpha subunit [Mycoplasma haemofelis str.
           Langford 1]
          Length = 925

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 233/951 (24%), Positives = 424/951 (44%), Gaps = 135/951 (14%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L V S+++ L+  L + +ILD   +       ITD  N ++ + F +     G++PI G
Sbjct: 5   PLFVRSNFTFLKSTLRIEDILDFSLSKGYKHALITDFKNSYAWVNFYKSCRKNGLKPIFG 64

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            +++                      ++L+     GY+ LI   +               
Sbjct: 65  LEVNYLNSI-----------------VLLIAFNKTGYENLIRTSTYG------------- 94

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              L     EG++++     G +  +                        Y         
Sbjct: 95  ---LSPHHLEGIVVIH--LDGEVTLSE-------------------HSHFY--------- 121

Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
                     +A + E   V    + FL++EDYE   +L ++ + +++S++         
Sbjct: 122 ----------MANSEEPNGVYVQENKFLNKEDYEFFCLLRSIENQSLLSEELELNRHFAD 171

Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
              N+       S L   ++N  +I   C            +F     + +++  +  L+
Sbjct: 172 DYLNKECPYDENSHL---VKNIYQILDLCQDYEIFDNSGKLQFFRNSNETLRQLSDLALK 228

Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                                 + YR+RLD EL+V+ +  F+ YFLIV + + WAK N+I
Sbjct: 229 RLTF------------DSDESFRIYRERLDLELSVVIQKGFADYFLIVQEAVSWAKNNDI 276

Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
            +GPGRGS  GS+ AY L IT++DP+++ L FERFLNP+R  +PD DID   ++R  ++ 
Sbjct: 277 CIGPGRGSVCGSLLAYVLGITEVDPIKYELYFERFLNPEREIIPDIDIDISNNKRHLLLE 336

Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
           +++++YG + V+ IITF + ++K ++R++ R+  +P  +VD                   
Sbjct: 337 HLRDRYGSDHVSLIITFSTFKSKNSVREIARSFGLPKEKVDS------------------ 378

Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
           A+++ F  +      ++R+L+         +++S HAAG++I   PLS LVP+     S 
Sbjct: 379 ANENNF--SHKQKELLNRILD-------FPKNSSIHAAGVIISSTPLSSLVPLISKENS- 428

Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHL 611
           L VTQ+    +++  LIKFDFL L  L+++ + ++ +     + +D S I  +D + Y L
Sbjct: 429 LNVTQWEADDLKELNLIKFDFLALHHLSVMDEIVNNIEDDLDLDLDWSSIDENDPKVYEL 488

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
           L +  T  IFQ +S  +++ ++  +P  + D+  L +++RPG  D I    NRK    + 
Sbjct: 489 LISGKTSFIFQFDSPKIKELIQKFKPSSLLDLALLSAIHRPGASDQIPALLNRKFSNSQK 548

Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
            S+    +  L +T G+IIYQEQVMQI   ++      +D  RR +      ++++  + 
Sbjct: 549 DSLPEPFNSRLGDTYGLIIYQEQVMQIISQITSSHFGYSDNFRRNLS--DPNKIEECSKT 606

Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
           F     KNG S+     I+  ++KFA YGFNKSHA AYA+ISY+  W+KT+YP  F    
Sbjct: 607 FFERGLKNGYSEKDLNLIWSYISKFASYGFNKSHAVAYAIISYRLLWLKTYYPQYFYKEI 666

Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTA 850
           +     +     +   + +        P + T  + +F   +N IY+ L+ I  +  +  
Sbjct: 667 L-----DFSDSAECFSEIQSSGFNFQYPKLGTSLLKEFFFSNNSIYFPLSRIVKLSPSFF 721

Query: 851 RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
               E    K +DS+ D    + S K+++  L  L+  G      +       +LD +  
Sbjct: 722 EKFPE---GKRYDSVLDALKHLVSLKISKEDLLILIRIGFFQSKEHPHFWA-SNLDEVHS 777

Query: 911 YAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENSSVRFENEQRVL 959
           ++ +V ++      ++F          D+I  E  +     +  + ++  L
Sbjct: 778 FSLFVREDNQ----SLFDLNLSDVEITDEIKKEYRAYPPKYLGIDLDRWSL 824


>gi|218133709|ref|ZP_03462513.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC
            43243]
 gi|217991084|gb|EEC57090.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC
            43243]
          Length = 1403

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 169/936 (18%), Positives = 312/936 (33%), Gaps = 173/936 (18%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F +      ++ I+      +        +           I+LL S+ +G   L  L+S
Sbjct: 528  FLKMCELLKMRDILTLDQLNEAGT----PDVDAIRKMPTYHIILLASSEQGRINLYRLIS 583

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
              ++        RI  S L     +G+I+ +   +G + +A    + +    R++ F   
Sbjct: 584  ASHIT-YFANRPRIPKSLLARY-RDGIIVGSACEAGDLFQAVLNGAPEEEIARIVNFYDY 641

Query: 175  ---KKLFGDRLYVNLQRHRGYDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               + +  +R  ++       D         +++ L      P+VAT +  F++ ED   
Sbjct: 642  LEVQPIGNNRFMIDSDSCWVKDEQDLIDLNRKIIHLGEVFNKPVVATGDVHFMNPEDEVY 701

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFIL 285
              ++M           DR       YL+   EM++ F  L   +A E  V    R   + 
Sbjct: 702  RRIVM---TQKGFDDADR---QAPLYLRTTEEMLAEFEYLDADKAYEIVVTNTDRIMKMC 755

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            +   P+ P         + +  +  LR+                         +RL+ EL
Sbjct: 756  EKIEPVRPDKRPP----VIENSDQTLRDICYNRAHEMYGP------TLPTVVEERLEREL 805

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------ 399
              I    +S  ++I    +  +  +   VG  RGS   S  A    IT+++PL       
Sbjct: 806  KSIISNGYSVMYIIAQKLVWKSNDDGYLVG-SRGSVGSSFAATMAGITEVNPLSPHYLCP 864

Query: 400  ---------------------------------------FSLLFERFLNPDRMSMPDFDI 420
                                                   F + FE FL       PD D+
Sbjct: 865  NCYYVDFDSEDVRKFSGAAGCDMPDKICPVCGKKLRKEGFDIPFETFLGFKGNKEPDIDL 924

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  + + +   Y +  +G  +  +  T G++  K A   V         Q ++L     
Sbjct: 925  NFSNEYQSKAHAYTEVIFGKGQTFKAGTIGTVAEKTAYGYVK---GYFEKQSEKL----- 976

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RP 538
                H V+ +    +                  ++     + R    H  GIV+      
Sbjct: 977  ---GHNVTKRNCEIE-----------------RLAAGCVDIRRTTGQHPGGIVVLPIGEE 1016

Query: 539  LSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+        S +  T F+   I+   L+K D LG    T+++   D        
Sbjct: 1017 IHTFTPIQHPANKMDSGITTTHFDYHSIDH-NLLKLDILGHLDPTMIRMLQDLTG----- 1070

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D + IP D  E   L      LGI      G +    G+     +  + ++   +P   
Sbjct: 1071 LDPTEIPLDSPEVMSLFKDTSALGITPDMIGGTKLGALGIPEFGTDFAMQMLIDAKPQHF 1130

Query: 656  DNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEAD 711
             ++V      +G +  + +   LI          I  ++ +M       L    S +  +
Sbjct: 1131 SDLVRIAGLAHGTDVWLGNAQTLIAEGKATISTAICTRDDIMTYLISMGLDKELSFTIME 1190

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +R+  G K  E +   K             +    + +    K   Y F K+HAAAY +
Sbjct: 1191 SVRKGKGLKD-EWLPIMK-------------EAGVPDWYIWSCKKIKYMFPKAHAAAYVM 1236

Query: 772  ISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIKKFCQDARQ----------- 811
            ++++ A+ K  YP+ +  A  ++              +K++ + +D ++           
Sbjct: 1237 MAWRVAYCKVFYPLAYYCAFFSIRADAFSYNLMCMGRDKLEYYIKDYKERHNAKTLSPTE 1296

Query: 812  ---------------FNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                              + MP  +       F+V D +I  SL AI G+G   A  I  
Sbjct: 1297 EATYADMRIVQEFYARGFEFMPIDIFRAKARSFQVIDGKIMPSLKAIDGLGEVAAESIEI 1356

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            A+ D  F S EDF +R         +L+S    G+L
Sbjct: 1357 AARDGAFLSKEDFKTRAKVGDSAVSLLDSFGILGSL 1392



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSALEFSQ-KACA 64
           V L  H+  S ++G     +++ +  +  Q AIAITD   +      F  +   +  A  
Sbjct: 277 VELHCHTKMSDMDGVSYAKDLIKQALSWGQKAIAITDHGTVQAFTDAFHVVRDLEGAAKK 336

Query: 65  AG 66
            G
Sbjct: 337 KG 338


>gi|237744035|ref|ZP_04574516.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
 gi|229431264|gb|EEO41476.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
          Length = 1449

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 163/950 (17%), Positives = 331/950 (34%), Gaps = 185/950 (19%)

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            N+F  + F +K    G++ +       ++               ++ ++++LV T  G +
Sbjct: 576  NMF--IIFLEKYKEKGLEYMKDINTGFEVN----------VKKQSLKNVMVLVKTQAGLK 623

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----GPIDRAFFFNSSQ 165
             +  LVS  ++   G +  RI  S L E   EGLI+ +  ++     G +   +  +  +
Sbjct: 624  NMYRLVSEAHIKYFGNKKARIPKSVLIE-NREGLIIGSSLTAHFMNTGELADLYLRHDLE 682

Query: 166  VAEKRLLTFK--KLFGDRLYVNLQRHRG--------YDRYRESQVVQLAYTHELPLVATN 215
              E+    +   +L     Y  L    G                   L     + + A++
Sbjct: 683  KLEEAAKFYDYIELLPKSTYNELIEKDGTGALGSYEEVEKMNKYFYDLGKRLGILVTASS 742

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ 269
            N  +L E +     +L+  +    V    +  +    Y +   EM+  FS L E      
Sbjct: 743  NVHYLDENEDIIRSILLYGSG--TVYNSRQYSINNGFYFRTTDEMLKEFSYLGEDEAKEV 800

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
             + NT +IA      ++   PI   F   + ++ ++  ++    KA      R+    + 
Sbjct: 801  VITNTNKIADMIESGIR---PIPEGFYPPKMENAEEIVKSMTYEKAY-----RIYGNPL- 851

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                 +    RL+ ELN I    FS  +L     ++ +  N   VG  RGS   S+ A+ 
Sbjct: 852  ----PEIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGSSLVAFM 906

Query: 390  LTITDIDPL-----------------------------------------RFSLLFERFL 408
            + IT+++ L                                          +S+ FE F+
Sbjct: 907  MGITEVNALYPHYICDNPECKYSEFIEKEGVGIDLPDKICPKCGAKLRKDGYSIPFEVFM 966

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
                  +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V +     
Sbjct: 967  GFKGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVRKYF--- 1023

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
                                           E    +     ++ + +  +G  +    H
Sbjct: 1024 -------------------------------EDNNLNAVRAEIIRLGRLCQGAKKTTGQH 1052

Query: 529  AAGIVIGD--RPLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
              G+VI      + +  P+ R    +      T ++   +++  L+K D LG    T ++
Sbjct: 1053 PGGMVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDEQ-LVKLDILGHDDPTTIK 1111

Query: 584  KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
                 L Q    +++  IP  D ET  + ++  +LG+   E  G      G+       +
Sbjct: 1112 -----LLQEYTNMEIKDIPLADKETLKIFSSTESLGVTP-EQIGTEIGTYGIPEFGTGFV 1165

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
              ++   RP     +V  +   +G    ++     +         +I  ++ +M      
Sbjct: 1166 RQMLIDTRPTTFAELVRISGLSHGTNVWLNNAQEFVRNGQATLSQIITVRDDIMNYLIDQ 1225

Query: 703  S---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
                  +    + +R+   KK  E  +K             + +    + +    +  +Y
Sbjct: 1226 GLDNSDAFKIMEFVRKGKPKKEPENWEKYSAM---------MKEKNVPDWYIESCRRIEY 1276

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------KIKKF-- 805
             F K HA AY +++ + A+ K H P+ F AA ++ + D+ +            K+++   
Sbjct: 1277 MFPKGHAVAYVMMAMRIAYFKVHQPLAFYAAFLSRKADDFDMEFMSRGILAKQKLEELSK 1336

Query: 806  -----------------CQDARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGT 847
                               +     I+++P  +       F + D +I   L  I G+G 
Sbjct: 1337 EPKLDPKKKNEQAICEIVVEMEARGIELLPVDIYLSDGKKFTIEDGKIRIPLIGINGLGG 1396

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
                 I++   +  F S+ED   R   ++     L+++   GA+     +
Sbjct: 1397 AVIDAIVKEREEGKFISVEDLKRRTKMQQPVVDKLKNI---GAISSLSET 1443



 Score = 72.3 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L VH+  S + G   + +I+ +       AIAITD   + S     + A         
Sbjct: 331 VELHVHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYAVVHSYPAAFKTAKKLSTDEEK 390

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           ++ I GC++ +   +   +TN           +V  + T
Sbjct: 391 MKAIFGCEMYMIDDEAPMVTNPKDKKIDDEEFVVFDIET 429


>gi|291459111|ref|ZP_06598501.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
            str. F0262]
 gi|291418365|gb|EFE92084.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
            str. F0262]
          Length = 1517

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 171/894 (19%), Positives = 303/894 (33%), Gaps = 174/894 (19%)

Query: 81   DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG 140
            D+L    +           ++L     G   L  L+S  +L    +++ +I  S L+   
Sbjct: 666  DSLLFDYEANVRKLPSFHCIILAKNDIGRINLYRLISESHLK-YFRKNPKIPKSLLKRY- 723

Query: 141  TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY----- 195
             EGLI+ +  ++G + +A    + +     + +F      +   N     G DRY     
Sbjct: 724  REGLILGSACAAGELFQAILRGAEEEQLLSIASFYDYLEIQPLGNNAFMLGSDRYSAKSR 783

Query: 196  -----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                    +++ L      P+ AT +  ++  ED     ++MA          +      
Sbjct: 784  EDLIAYNRKILSLGEQLGKPVCATCDCHYIEPEDDIYRRIIMAGRGF------EEEESDA 837

Query: 251  DHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              Y +N  EM+S FS L         ++N   IA  C FI  V     P  I        
Sbjct: 838  SLYFRNTEEMLSEFSYLEPNKAKEVVIDNPKRIADMCEFIEPVRPDKCPPVIP------- 890

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             + + ELR                      +   +RL+ EL  I    +S  ++I    +
Sbjct: 891  -DSDAELRRICSETAHKMYGPSL------PRIVEERLETELRSIISNGYSVLYIIAQRLV 943

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------- 399
              + ++   VG  RGS   S  A    IT+++PL                          
Sbjct: 944  DKSNEDGYLVG-SRGSVGSSFAATMAHITEVNPLPPHYVCPDCYWSDFDSPEVKAFSGMA 1002

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                F + FE FL  +    PD D++F  + + +   Y    +G
Sbjct: 1003 GCDMPKKKCPHCGAELNRWGFDIPFETFLGFNGDKEPDIDLNFSGEYQAKAHAYTGEIFG 1062

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
                 +  T G+L  K A   V +                                   R
Sbjct: 1063 EGHTFKAGTIGTLADKTAYGMVKKYY-------------------------------EER 1091

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLP 554
                    ++R++   Q   G+ R    H  GIV+      ++   P+          + 
Sbjct: 1092 NLIKRGAEIERMV---QGCVGVRRTTGQHPGGIVVLPHGEEINTFTPVQHPANDLGSPII 1148

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT 614
             T F+   I+   L+K D LG    T+++K  D      V      IP D  E   L  +
Sbjct: 1149 TTHFDYHKIDH-NLLKLDILGHDDPTMIRKLQDLTGIDPV----KDIPLDSPEVMSLFRS 1203

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS- 673
               LGI   +  G+R    G+        + +V   +P    +++  +   +G +  ++ 
Sbjct: 1204 TEALGIRPEDIQGVRLGCLGIPEFGTSFAMQMVEDTKPRYFSDLIRISGLSHGTDVYLNN 1263

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
               LI   +   Q  I  ++ +M +  +  G    E+  +  A  K         KE + 
Sbjct: 1264 AQDLILEGVTTLQDAICCRDDIM-VYLMHRGMDPGESFSIMEATRKHKP-----LKEEWC 1317

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            S   K G+ +       ++      Y F K+HAAAY +++++ A+ K  YP E+ AA  +
Sbjct: 1318 SDMLKRGVPQWYIDACKKI-----KYMFPKAHAAAYVMMAWRVAYCKVFYPREYYAAYYS 1372

Query: 794  LEMDNV---------EKIKKFC-----------------------QDARQFNIQIMPPSV 821
            +  D           +K++ +                        ++     I+  P  +
Sbjct: 1373 IRADGFDYDKMCFGLDKLRYYIKLYQEIERPTATESVCLRDMKICEEMYARGIEFAPIDI 1432

Query: 822  NTP-CVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                  DF++ GD +I  S   + G+G   A  I E +    F S +DF +R  
Sbjct: 1433 YRARAKDFQITGDGKIMPSFNCMAGLGEAVALGIEEGARKGAFLSKDDFLNRTH 1486



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           V L +H+  S ++G   +N+ +D   +    A+AITD   + +  + +      G
Sbjct: 403 VELHLHTKMSDMDGVSDVNDYIDTALSFGMDAMAITDHGVVQAFPDAASHLKKLG 457


>gi|28378678|ref|NP_785570.1| DNA polymerase III PolC [Lactobacillus plantarum WCFS1]
 gi|254556876|ref|YP_003063293.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1]
 gi|300768189|ref|ZP_07078094.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
            ATCC 14917]
 gi|308180817|ref|YP_003924945.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
            ST-III]
 gi|32469698|sp|Q88VK2|DPO3_LACPL RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|28271514|emb|CAD64419.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Lactobacillus
            plantarum WCFS1]
 gi|254045803|gb|ACT62596.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1]
 gi|300494253|gb|EFK29416.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
            ATCC 14917]
 gi|308046308|gb|ADN98851.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
            ST-III]
          Length = 1437

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 161/929 (17%), Positives = 306/929 (32%), Gaps = 192/929 (20%)

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
              Q+    Q N  M               L   T  G + L  ++S   + +   +  R+
Sbjct: 588  RYQVQFHDQLNDHMNENAAYRHARPFHATLYAQTQAGLKNLFRIISLSNV-EYYYRVPRV 646

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLFGDRLYV 184
              S L +   +G+++ +  SSG +  A      + A ++   +       K  +   +  
Sbjct: 647  PRSVLNKY-RDGILVGSACSSGEVFTAMMQKGKEEARQKAGYYDFLEVQPKPAYSALIES 705

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             L     +     S +V+L +   +P+ AT +  +L+ ED     +L+       +++ +
Sbjct: 706  GLIADTDHLEEIISNMVELGHEMNIPVAATGDVHYLNPEDKIYRKILIHSQPGNPLNRTE 765

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R    PD + ++  EM+  F  L    A E  V+  R  +   ++  P+  +        
Sbjct: 766  R----PDVHFRSTDEMLKDFDFLGTETAHEVVVDTPRALADQFEIVRPVKDKLYTPRMKG 821

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             + E E    ++A A                 +  ++R+D EL  I    FS  +LI   
Sbjct: 822  AEAEIEKLTMDRAHAWY----------GNPLPEIVQKRVDKELKSIIGNGFSVIYLIAQR 871

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF---------------------- 400
             +  + K+   VG  RGS   S+ A    IT+++P+                        
Sbjct: 872  LVFKSNKDGYLVG-SRGSVGSSIVATLSGITEVNPMPPHYRCPNCQYSHFYTNNEYGSGY 930

Query: 401  -------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
                               ++ FE FL      +PD D++F  D +     Y +  +G +
Sbjct: 931  DLPPKDCPECGTDMVRDGQNIPFETFLGFYGNKVPDIDLNFSGDYQPIAHNYTKVLFGEK 990

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
             V +  T G++  K     V +A +   +Q                              
Sbjct: 991  NVYRAGTIGTVADKTGYGYV-KAYERDTNQT----------------------------- 1020

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRSD---LPVT 556
             L    VDRL   ++   G+ R    H AGI++      +    P+             T
Sbjct: 1021 -LRSAEVDRL---AKGTTGVKRTTGQHPAGIIVVPDYMDIYDFTPVQYPADDQSAAWQTT 1076

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY------- 609
             F+   I    ++K D LG    T+++   D        V    IP  D           
Sbjct: 1077 HFDFHSIHD-NILKIDILGHDDPTMIRMLQDL-----SGVQPESIPPVDPHVMKIFSSPE 1130

Query: 610  -------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                    + +  GTLGI +  +  +R  LE   P    +++ +  L     +       
Sbjct: 1131 VLGVTEDQIFSKTGTLGIPEFGTRFVRGMLEETHPSTFNELLQISGLSHGTDVWLG---- 1186

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGK 719
                      +   LI         VI  ++ +M       + S  S    + +R+    
Sbjct: 1187 ----------NAEELIKDGTVTLAEVIGCRDNIMTDLIHYGMESDMSFQIMEHVRKG--- 1233

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
                       R I    +  +      + +        Y F ++HAAAY +++ + A+ 
Sbjct: 1234 -----------RGIPDEWQQAMKDANVPDWYIESCLKIKYMFPRAHAAAYILMALRVAYF 1282

Query: 780  KTHYPVEFLAASMTLEMDNVEKIK---------------------------------KFC 806
            K ++P+ +  A  ++  D+ + +                                  +  
Sbjct: 1283 KVYFPLIYYTAYFSVRADDFDLVAMAHGKDAVKASMKAITDKGMDASAKEKNLLTVLELA 1342

Query: 807  QDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +  +   +     ++     D+ +  + +     A+ G+G   A+ I+ A ADKPF S 
Sbjct: 1343 NEMLERGFKFSMVDLDKSDASDWLIDGDTLIAPFRAVPGLGLNVAKQIVAARADKPFLSK 1402

Query: 866  EDFCSRVDSKKLNRRVL-ESLVFAGALDC 893
            ED   R    K     + E+ V +   D 
Sbjct: 1403 EDLSKRGKVSKSLIDFMTENGVLSDLPDE 1431



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 33/66 (50%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++   S+++ + + A    PAIAITD +   +  E         I+ + 
Sbjct: 336 VELHLHSNMSQMDATNSVSDYVKQAAKWGHPAIAITDHSGAQAFPEAFAAGEKNNIKILY 395

Query: 72  GCQLDI 77
           G + ++
Sbjct: 396 GVEANM 401


>gi|291557938|emb|CBL35055.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium siraeum
            V10Sc8a]
          Length = 1605

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 172/905 (19%), Positives = 297/905 (32%), Gaps = 193/905 (21%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
                ++LV    G + L  L+S   L D   +  RI  S L +   EGLI+ +   +G +
Sbjct: 779  TYHQIILVKNKVGLKNLYRLISASNL-DYFYKKPRIPKSLLSQY-REGLIIGSACEAGEL 836

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYR--ESQVVQLAYTH 207
             RA     SQ   + + +F      + +  +   +   +    +  R     +VQL    
Sbjct: 837  FRAILEKESQEKIEEIASFYDYLEIQPIGNNMFLLRNGKVSSEEDLRDLNRAIVQLGDRL 896

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
              P+VAT +  F   ED    +VL A       +        P  Y +   EM+  F+ L
Sbjct: 897  GKPVVATCDVHFKDPEDAVFREVLQAGQGYEDFAN------QPPLYFRTTDEMLEEFAYL 950

Query: 268  PE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
             E  A E  +    R + +++V  PI         D   +E +    ++A A     L  
Sbjct: 951  GEEKAKEVVITNTNRIADMIEVVRPIPTGTYTPHIDGADEELQQLCWDRAHAWYGDDL-- 1008

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                     +   +RL  EL+ I +  F+  ++I    + +++KN   VG  RGS   SV
Sbjct: 1009 --------PETVEKRLKKELDSIIKHGFAVLYMIAQKLVAFSEKNGYLVG-SRGSVGSSV 1059

Query: 386  TAYALTITDIDPLR-----------------------------------------FSLLF 404
             A    I++++PL                                            + F
Sbjct: 1060 VAIMAGISEVNPLPPHYRCPKCRHNEFILDGSYGSGFDLPPKKCPNCDIDMIRDGHDIPF 1119

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  D    PD D++F  + + +V RY +  +G + V +  T  ++Q K A   V + 
Sbjct: 1120 ETFLGFDGDKSPDIDLNFSGEVQGKVHRYTEELFGKDHVFKAGTISAVQEKTAEGFVRKW 1179

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L+      +                                     +  ++    G+ R 
Sbjct: 1180 LEKKGMTANS----------------------------------AEISRLAAGCTGVKRT 1205

Query: 525  ASTHAAGIVI--GDRPLSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
             S H  G+V+   D  +     +        SD+  T F+   +    ++K D LG    
Sbjct: 1206 TSQHPGGMVVVPSDYEVYDFTAVQHPADKTESDMITTHFDFHALHDT-ILKLDELGHDVP 1264

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLES 625
            TL +   D    +     ++ +P  D +   L T+               GT GI +  +
Sbjct: 1265 TLYKHLEDMTGIK-----IADVPTSDPKVMELFTSTEPLGIKEEDLGVSSGTYGIPEFGT 1319

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
                Q L+  QP    D++ +  L     +                 +   LI       
Sbjct: 1320 PFTLQMLKDAQPKKFSDLLQISGLSHGTDVWLG--------------NAQDLISDGTCTI 1365

Query: 686  QGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
              VI  ++ +M       L    +    ++ R+   KK+  E                  
Sbjct: 1366 SEVIGCRDDIMVYLMHQGLEPKLAFKIMEITRKGNAKKLFNE-----------DIYKAFE 1414

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-- 800
            +      +    K   Y F K+HAAAY   + +  W K +YP EF +A +T   +N++  
Sbjct: 1415 ENNVPQWYIESCKKIKYMFPKAHAAAYVTGAVKLCWFKVYYPSEFYSAVLTKHTENIDVK 1474

Query: 801  -----------KIK-------------------KFCQDARQFNIQIMPPSVNTP-CVDFK 829
                       KI+                       +     I  +P          + 
Sbjct: 1475 TVLGGKESVRNKIQLIQSNPEATAKDKGMLDALLLIYEMMLRGITFLPVDYKKSRATTYA 1534

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            + D  +     A++G G   A  + E      F  LED  ++     +N  VL  L    
Sbjct: 1535 IEDGNLRLPFLAVEGCGENAAIKLKEVIDKGDFICLEDIQAQ---SGINSTVLSKLYDMN 1591

Query: 890  ALDCF 894
                 
Sbjct: 1592 VFGDL 1596



 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
           V L +H++ S ++   + + ++ +  A    A+AITD  N
Sbjct: 501 VELHMHTNMSDMDAVTAPSVLVKQAHAWGHKAVAITDHGN 540


>gi|291530449|emb|CBK96034.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium siraeum
            70/3]
          Length = 1605

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 171/905 (18%), Positives = 297/905 (32%), Gaps = 193/905 (21%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
                ++LV    G + L  L+S   L D   +  RI  S L +   EGLI+ +   +G +
Sbjct: 779  TYHQIILVKNKVGLKNLYRLISASNL-DYFYKKPRIPKSLLSQY-REGLIIGSACEAGEL 836

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYR--ESQVVQLAYTH 207
             RA     SQ   + + +F      + +  +   +   +    +  R     +V+L    
Sbjct: 837  FRAILEKESQEKIEEIASFYDYLEIQPIGNNMFLLRNGKVSSEEDLRDLNRAIVELGDRL 896

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
              P+VAT +  F   ED    +VL A       +        P  Y +   EM+  F+ L
Sbjct: 897  GKPVVATCDVHFKDPEDAVFREVLQAGQGYEDFAN------QPPLYFRTTDEMLEEFAYL 950

Query: 268  PE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
             E  A E  +    R + +++V  PI         D   +E +    ++A A     L  
Sbjct: 951  GEEKAKEVVITNTNRIADMIEVVRPIPTGTYTPHIDGADEELQQLCWDRAHAWYGDNL-- 1008

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                     +   +RL  EL+ I +  F+  ++I    + +++KN   VG  RGS   SV
Sbjct: 1009 --------PETVEKRLKKELDSIIKHGFAVLYMIAQKLVAFSEKNGYLVG-SRGSVGSSV 1059

Query: 386  TAYALTITDIDPLR-----------------------------------------FSLLF 404
             A    I++++PL                                            + F
Sbjct: 1060 VAIMAGISEVNPLPPHYRCPKCRHNEFILDGSYGSGFDLPPKKCPNCDIDMIRDGHDIPF 1119

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  D    PD D++F  + + +V RY +  +G + V +  T  ++Q K A   V + 
Sbjct: 1120 ETFLGFDGDKSPDIDLNFSGEVQGKVHRYTEELFGKDHVFKAGTISAVQEKTAEGFVRKW 1179

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L+      +                                     +  ++    G+ R 
Sbjct: 1180 LEKKGMTANS----------------------------------AEISRLAAGCTGVKRT 1205

Query: 525  ASTHAAGIVI--GDRPLSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
             S H  G+V+   D  +     +        SD+  T F+   +    ++K D LG    
Sbjct: 1206 TSQHPGGMVVVPSDYEVYDFTAVQHPADKTESDMITTHFDFHALHDT-ILKLDELGHDVP 1264

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLES 625
            TL +   D    +     ++ +P  D +   L T+               GT GI +  +
Sbjct: 1265 TLYKHLEDMTGIK-----IADVPTSDPKVMELFTSTEPLGIKEEDLGVSSGTYGIPEFGT 1319

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
                Q L+  QP    D++ +  L     +                 +   LI       
Sbjct: 1320 PFTLQMLKDAQPKKFSDLLQISGLSHGTDVWLG--------------NAQDLISDGTCTI 1365

Query: 686  QGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
              VI  ++ +M       L    +    ++ R+   KK+  E                  
Sbjct: 1366 SEVIGCRDDIMVYLMHQGLEPKLAFKIMEITRKGNAKKLFNE-----------DIYKAFE 1414

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-- 800
            +      +    K   Y F K+HAAAY   + +  W K +YP EF +A +T   +N++  
Sbjct: 1415 ENNVPQWYIESCKKIKYMFPKAHAAAYVTGAVKLCWFKVYYPSEFYSAVLTKHTENIDVK 1474

Query: 801  -----------KIK-------------------KFCQDARQFNIQIMPPSVNTP-CVDFK 829
                       KI+                       +     I  +P          + 
Sbjct: 1475 TVLGGKESVRNKIQLIQSNPEATAKDKGMLDALLLIYEMMLRGITFLPVDYKKSRATTYA 1534

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            + D  +     A++G G   A  + E      F  LED  ++     +N  VL  L    
Sbjct: 1535 IEDGNLRLPFLAVEGCGENAAIKLKEVIDKGDFICLEDIQAQ---SGINSTVLSKLYDMN 1591

Query: 890  ALDCF 894
                 
Sbjct: 1592 VFGDL 1596



 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
           V L +H++ S ++   + + ++ +  A    A+AITD  N
Sbjct: 501 VELHMHTNMSDMDAVTAPSVLVKQAHAWGHKAVAITDHGN 540


>gi|256028575|ref|ZP_05442409.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289766495|ref|ZP_06525873.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289718050|gb|EFD82062.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
          Length = 1449

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 164/950 (17%), Positives = 332/950 (34%), Gaps = 185/950 (19%)

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            N+F  + F +K    G++ +       ++               ++ ++++LV T  G +
Sbjct: 576  NMF--IIFLEKYKEKGLEYMKDINTGFEVN----------VKKQSLKNVMVLVKTQAGLK 623

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----GPIDRAFFFNSSQ 165
             +  LVS  ++   G +  RI  S L E   EGLI+ +  ++     G +   +  +  +
Sbjct: 624  NMYRLVSEAHIKYFGNKKARIPKSVLIE-NREGLIIGSSLTAHFMNTGELADLYLRHDLE 682

Query: 166  VAEKRLLTFK--KLFGDRLYVNLQR------HRGYDRYR--ESQVVQLAYTHELPLVATN 215
              E+    +   +L     Y  L           Y+           L     + + A++
Sbjct: 683  KLEEAAKFYDYIELLSKSTYNELIEKDETGALGSYEEVEKMNKYFYDLGKRLGILVTASS 742

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ 269
            N  +L E +     +L+  +    V    +  +    Y +   EM+  FS L E      
Sbjct: 743  NVHYLDENEDIIRSILLYGSG--TVYNSRQYSINNGFYFRTTDEMLKEFSYLGEDEAKEV 800

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
             + NT +IA      +    PI   F   + ++ ++  ++    KA      R+    + 
Sbjct: 801  VITNTNKIADMIESEI---KPIPEGFYPPKMENAEEIVKSMTYEKAY-----RIYGNPL- 851

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                 +    RL+ ELN I    FS  +L     ++ +  N   VG  RGS   S+ A+ 
Sbjct: 852  ----PEIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGSSLVAFM 906

Query: 390  LTITDIDPL-----------------------------------------RFSLLFERFL 408
            + IT+++ L                                          +S+ FE F+
Sbjct: 907  MGITEVNALYPHYICDNPECKYSEFIEKEGVGIDLPDKICPKCGAKLRKDGYSIPFEVFM 966

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
                  +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V +     
Sbjct: 967  GFKGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVRKYF--- 1023

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
                                           E    +     ++ + +  +G  +    H
Sbjct: 1024 -------------------------------EDNNLNAVRAEIIRLGRLCQGAKKTTGQH 1052

Query: 529  AAGIVIGD--RPLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
              G+VI      + +  P+ R    +      T ++   +++  L+K D LG    T ++
Sbjct: 1053 PGGMVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDEQ-LVKLDILGHDDPTTIK 1111

Query: 584  KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
                 L Q    +++  IP  D +T  + ++  +LG+   E  G      G+       +
Sbjct: 1112 -----LLQEYTNMEIKDIPLADKDTLKIFSSTESLGVTP-EQIGTEIGTYGIPEFGTGFV 1165

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
              ++   RP     +V  +   +G    ++     +         +I  ++ +M      
Sbjct: 1166 RQMLIDTRPTTFAELVRISGLSHGTNVWLNNAQEFVRNGQATLSQIITVRDDIMNYLIDQ 1225

Query: 703  S---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
                  +    + +R+   KK  E  +K             + +    + +    +  +Y
Sbjct: 1226 GLDNSDAFKIMEFVRKGKPKKEPENWEKYSAM---------MKEKNVPDWYIESCRRIEY 1276

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------KIKKF-- 805
             F K HA AY +++ + A+ K H P+ F AA ++ + D+ +            K+++   
Sbjct: 1277 MFPKGHAVAYVMMAMRIAYFKVHQPLAFYAAFLSRKADDFDMEFMSRGILAKQKLEELSK 1336

Query: 806  -----------------CQDARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGT 847
                               +     I+++P  +       F + D +I   L  I G+G 
Sbjct: 1337 EPKLDPKKKNEQAICEIVVEMEARGIELLPVDIYLSDGKKFTIEDGKIRIPLIGINGLGG 1396

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
                 I++   +  F S+ED   R    K+ + V++ L   GA+     +
Sbjct: 1397 AVIDAIVKEREEGKFISVEDLKRRT---KMQQPVIDKLKNIGAISSLSET 1443



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L  H+  S + G   + +I+ +       AIAITD   + S     + A         
Sbjct: 331 VELHAHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYAVVHSYPAAFKTAKKLSTDEEK 390

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           ++ I GC++ +   +   +TN           +V  + T
Sbjct: 391 MKAIFGCEMYMIDDEAPMVTNPKDKKIDDEEFVVFDIET 429


>gi|294784973|ref|ZP_06750261.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium
            sp. 3_1_27]
 gi|294486687|gb|EFG34049.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium
            sp. 3_1_27]
          Length = 1449

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 162/947 (17%), Positives = 329/947 (34%), Gaps = 179/947 (18%)

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            N+F  + F +K    G++ +       ++               ++ +I++LV T  G +
Sbjct: 576  NMF--IIFLEKYKEKGLEYMKDINTGFEVNVRK----------QSLKNIMVLVKTQAGLK 623

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----GPIDRAFFFNSSQ 165
             +  LVS  ++   G +  RI  S L E   EGLI+ +  ++     G +   +  +  +
Sbjct: 624  NMYRLVSEAHIKYFGNKKARIPKSVLVE-NREGLIIGSSLTAHFMNTGELADLYLRHDLE 682

Query: 166  VAEKRLLTFK--KLFGDRLYVNLQRHRG--------YDRYRESQVVQLAYTHELPLVATN 215
              E+    +   +L     Y  L    G                   L     + + A++
Sbjct: 683  KLEEAAKFYDYIELLPKSTYNELIEKDGTGALGSYEEVEKMNKYFYDLGKRLGILVTASS 742

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALEN 273
            N  +L E +     +L+  +    V    +  +    Y +   EM+  FS L E  A E 
Sbjct: 743  NVHYLDENEDIIRSILLYGSG--TVYNSRQYSINNGFYFRTTDEMLKEFSYLGEDVAKEV 800

Query: 274  TVEIARRCSFILQVH-APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
             V    + + +++    PI   F   + ++ ++        KA      R+    +    
Sbjct: 801  VVTNTNKIADMIESGIRPIPEGFYPPKMENAEEIVRTMTYEKAY-----RIYGDPL---- 851

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
                   RL+ ELN I    FS  +L     ++ +  N   VG  RGS   S+ A+ + I
Sbjct: 852  -PDIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGSSLVAFMMGI 909

Query: 393  TDIDPL-----------------------------------------RFSLLFERFLNPD 411
            T+++ L                                          +S+ FE F+   
Sbjct: 910  TEVNALYPHYICDNPECKYSEFIEREGVGIDLPDKICPKCNAKLRKDGYSIPFEVFMGFK 969

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
               +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V +        
Sbjct: 970  GDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVRKYF------ 1023

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                                        E    +     ++ + +  +G  +    H  G
Sbjct: 1024 ----------------------------EDNNLNAVRAEIIRLGRLCQGAKKTTGQHPGG 1055

Query: 532  IVIGD--RPLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            +VI      + +  P+ R    +      T ++   +++  L+K D LG    T ++   
Sbjct: 1056 MVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDEQ-LVKLDILGHDDPTTIK--- 1111

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
              L Q    +++  IP  D +T  + ++  +LG+   E  G      G+       +  +
Sbjct: 1112 --LLQEYTNMEIKDIPLADKDTLKIFSSTESLGVTP-EQIGTEIGTYGIPEFGTGFVRQM 1168

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQLLS-- 703
            +   RP     +V  +   +G    ++     +         +I  ++ +M         
Sbjct: 1169 LIDTRPTTFAELVRISGLSHGTNVWLNNAQEFVRNGQATLSQIITVRDDIMNYLIDQGLD 1228

Query: 704  -GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
               +    + +R+   KK  E  +K             + +    + +    +  +Y F 
Sbjct: 1229 NSDAFKIMEFVRKGKPKKEPENWEKYSTM---------MKEKNVPDWYIESCRRIEYMFP 1279

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------KIKKF----- 805
            K HA AY +++ + A+ K H P+ F AA ++ + D+ +            K+++      
Sbjct: 1280 KGHAVAYVMMAMRIAYFKVHQPLAFYAAFLSRKADDFDMEVMSRGILAKQKLEELSKEPK 1339

Query: 806  --------------CQDARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGTTTA 850
                            +     ++++P  +       F + DN+I   L  I G+G    
Sbjct: 1340 LDPKKKNEQAICEIVVEMEARGLELLPVDIYLSDGKKFTIEDNKIRIPLIGINGLGGAVI 1399

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
              I++   +  F S+ED   R   ++     L+++   GA+     +
Sbjct: 1400 DAIVKEREEGKFISVEDLKRRTKIQQPVVDKLKNI---GAISSLSET 1443



 Score = 68.1 bits (165), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L  H+  S + G   + +I+ +       AIAITD + + S     +           
Sbjct: 331 VELHAHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYSVVHSYPAAFKTTKKLSTDEEK 390

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           ++ I GC++ +   +   +TN           +V  + T
Sbjct: 391 MKAIFGCEMYMIDDEAPMVTNPKNKKIDDEEFVVFDIET 429


>gi|237739760|ref|ZP_04570241.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
 gi|229423368|gb|EEO38415.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
          Length = 1449

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 170/947 (17%), Positives = 334/947 (35%), Gaps = 179/947 (18%)

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            N+F  + F +K    GI+ +       ++               ++ +I++ V T EG +
Sbjct: 576  NMF--IIFLEKYKEKGIEYLKDINKGFEVN----------VKKQSLKNIMVQVKTQEGLK 623

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG-----GSSGPIDRAFFFNSSQ 165
             + +LVS  ++   G +  RI  S L+E   EGLI+ +       +SG +   +  +  +
Sbjct: 624  NMYKLVSEGHIKYFGNKKARIPKSVLKE-NREGLIVGSSLSAHFMNSGELVELYLRHDLE 682

Query: 166  VAEKRLLTFK--KLFGDRLYVNLQRHRG------YDRYR--ESQVVQLAYTHELPLVATN 215
              E+    +   +L     Y  L    G      YD           L     + + A++
Sbjct: 683  KLEETAKFYDYIELLPKSTYNELIEKEGTGSLASYDEVEKMNKYFYDLGKRLGILVTASS 742

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALEN 273
            N  +L E +     +L+  +    V    + RV    Y +   EM+  FS L E  A E 
Sbjct: 743  NVHYLDENEDIIRSILLYGSG--TVYSPRQYRVNNGFYFRTTDEMLKEFSYLGEQEAKEV 800

Query: 274  TVEIARRCSFILQVH-APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
             +    + + +++    PI   F   + D+ ++        KA      R+    +    
Sbjct: 801  VITNTNKIADMVEEGIKPIPEGFYPPKMDNAEEIVRTMTYEKAY-----RIYGDPL---- 851

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
                   RL+ ELN I    FS  +L     ++ +  N   VG  RGS   S+ A+ + I
Sbjct: 852  -PNIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGSSLVAFMMGI 909

Query: 393  TDIDPL-----------------------------------------RFSLLFERFLNPD 411
            T+++ L                                          +S+ FE F+   
Sbjct: 910  TEVNALYPHYICDNPECKHSEFIEKEGVGIDLPDKICPNCGAPLRKDGYSIPFEVFMGFK 969

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
               +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V +        
Sbjct: 970  GDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVRKYF------ 1023

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                                        E    +     ++ + +  +G  +    H  G
Sbjct: 1024 ----------------------------EDNNLNAVRAEIIRLGRLCQGAKKTTGQHPGG 1055

Query: 532  IVIGD--RPLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            +VI      + +  P+ R    +      T ++   +++  L+K D LG    T ++   
Sbjct: 1056 MVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDEQ-LVKLDILGHDDPTTIK--- 1111

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
              L Q    +++  IP  D +T  + ++  +LG+   E  G      G+       +  +
Sbjct: 1112 --LLQEYTNMEIKDIPLADKDTLKIFSSTESLGVSPEEI-GTEIGTYGIPEFGTGFVRQM 1168

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQLLS-- 703
            +   RP     +V  +   +G    ++     +         +I  ++ +M         
Sbjct: 1169 LIDTRPTTFAELVRISGLSHGTNVWLNNAQEFVRNGQATLSQIITVRDDIMNYLIDQGLD 1228

Query: 704  -GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
               +    + +R+   KK  E  +            N + +    + +    +  +Y F 
Sbjct: 1229 NSDAFKIMEFVRKGKPKKEPENWENY---------SNMMKEKNVPDWYIESCRRIEYMFP 1279

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------KIKKF----- 805
            K HA AY +++ + A+ K H P+ F AA ++ + D+ +            K+++      
Sbjct: 1280 KGHAVAYVMMAMRIAYFKVHKPLAFYAAFLSRKADDFDMEVMSKGVLAKQKLEELSKEPK 1339

Query: 806  --------------CQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTA 850
                            +     I+++P  +       FK+ D +I   L  I G+G    
Sbjct: 1340 LDPKKKNEQAICEIVVELEARGIELLPVDIYLSEGRKFKIEDGKIRIPLIGISGLGGAVI 1399

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +I++   +  F S+ED   R    +     L+S+   GA+     +
Sbjct: 1400 ENILKEREEAKFISVEDLKRRTKMSQTVADKLKSI---GAISSLSET 1443



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L  H+  S + G   + +++ +       AIAITD + + S     + A         
Sbjct: 331 VELHTHTKMSEMVGVTDVEDLIKRAKEYGHKAIAITDYSVVHSYPAAYKTAKKLSKDDDK 390

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           ++ I GC++ +   + L +TN           +V  + T
Sbjct: 391 MKVIFGCEMYMIDDEALMITNPKDKKIDEEEFVVFDIET 429


>gi|229824922|ref|ZP_04450991.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC
            49176]
 gi|229790925|gb|EEP27039.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC
            49176]
          Length = 1463

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 164/893 (18%), Positives = 305/893 (34%), Gaps = 170/893 (19%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
               I++L     G   L +LVS  +L +  ++  RI  S L     EGLI+ +   +G +
Sbjct: 625  TDHIIILAKNDIGRINLYKLVSLSHL-EYFQRRPRIPKSLLM-ANREGLIIGSACEAGEL 682

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFG----DRLYVNLQRHRGYD-------RYRESQVVQLA 204
             +A      +     +  F   F     D     ++  R  D       R    ++V+L 
Sbjct: 683  YQAVLRRHGEDELAAIADFYDYFEIQPLDNNGFMIESDRVPDITSEEDLREINRKIVELG 742

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
                 P+VAT ++ FL+ ED      L+    S  +   DRP      YL+   EM+  F
Sbjct: 743  EKFNKPVVATCDAHFLNPEDEIYRKYLL---WSKGMKDADRPLPL---YLRTTEEMLEEF 796

Query: 265  SDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            + L +     V I      + +++  +P+ P     +C  I +  + ELR          
Sbjct: 797  AYLGKEKAEEVVITNTNLIADMIENISPVRP----DKCAPIIENSDAELRRICYDKAHEI 852

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                   K         RL+ ELN I    F+  ++I    +  + ++   VG  RGS  
Sbjct: 853  YGDDLPKK------VVDRLEHELNSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSVG 905

Query: 383  GSVTAYALTITDIDPLR------------------------------------------- 399
             S  A+   IT+++ L                                            
Sbjct: 906  SSFVAFLSGITEVNSLSAHYYCEHCHYVDFDSDEVKSFSGKSGCDMPDKNCPVCGKPLIK 965

Query: 400  --FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
                + FE FL  +    PD D++F  + + +   Y +  +G  +  +  T G +  K A
Sbjct: 966  DGHDIPFETFLGFNGDKEPDIDLNFSGEYQAKAHAYTEVIFGEGQTFRAGTIGGVADKTA 1025

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
               V +  +   + V R                                    +  +S  
Sbjct: 1026 YGYVLKYNEEHDNIVMRRS---------------------------------EIERVSAG 1052

Query: 518  LEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFD 572
              G+ R    H  GIV+      ++   P+        + +  T F+   I+   L+K D
Sbjct: 1053 CIGVRRTTGQHPGGIVVLPLGENINSFTPVQHPANKMDTPIITTHFDYHSIDH-NLLKLD 1111

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
             LG    T+++   D             I FDD +   L  +  +L +   +  G     
Sbjct: 1112 ILGHDDPTMIRMLEDLTGVVAR-----EIRFDDEKVLSLFNSLDSLDLKAEDLDGYDLGS 1166

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIY 691
             G+     + ++ ++   +P    ++V  +   +G +    +   LI     E    I  
Sbjct: 1167 LGLPELGTDFVMQMLRDTKPKCFSDLVRISGLSHGTDVWTGNTQTLIAENKCELSTAICT 1226

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            ++ +M I  +  G     A  +  ++ K      + ++E            +    + + 
Sbjct: 1227 RDDIM-IYLIDMGLEPGHAFKIMESVRKGKGLTPEWEQEML----------EHNVPDWYI 1275

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------- 800
               K   Y F K+HA AY +++ + A+ K HYP+ + +A  ++     +           
Sbjct: 1276 WSCKKIKYMFPKAHAVAYIMMALRIAYFKVHYPLAYYSAYFSIRAKAFDYGLFCFGKEKL 1335

Query: 801  --------KIKKF---------------CQDARQFNIQIMPPSV-NTPCVDFKVGDNRIY 836
                    K++K+                 +      + MP  +       F++ D +I 
Sbjct: 1336 LNVIKEIKKMEKYQRKKTDEDTLGDAYIVLEMYARGFEFMPIDIYKAKPKHFRIIDGKIM 1395

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +L  I+G+G   A  + EA+    F S +D   R   K   +  L+ +   G
Sbjct: 1396 PALVTIEGLGDKAAYALYEAAKKGKFLSKDDLKQRA--KGTTQTALDKMTELG 1446



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQKACAAGIQ 68
           V L +H++ S ++  +   N+L  ++     A+A+TD   +     AL    K      +
Sbjct: 347 VELHLHTNMSEMDAVIDPGNLLKTLSEWGHSAVALTDHGVVQGFTNALHAKAKLKMKDFK 406

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE-GYQRLIELV 116
            I G +  + + D        K    T P++V  + T   G +    ++
Sbjct: 407 LIYGVEGYL-VNDMTPAVRMDKGQKLTDPAVVFDIETTGFGPKN-CRII 453


>gi|116627026|ref|YP_819645.1| DNA polymerase III PolC [Streptococcus thermophilus LMD-9]
 gi|122268369|sp|Q03MX3|DPO3_STRTD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116100303|gb|ABJ65449.1| DNA polymerase III catalytic subunit, PolC type [Streptococcus
            thermophilus LMD-9]
 gi|312277486|gb|ADQ62143.1| DNA polymerase III polC-type [Streptococcus thermophilus ND03]
          Length = 1464

 Score =  413 bits (1061), Expect = e-112,   Method: Composition-based stats.
 Identities = 156/916 (17%), Positives = 317/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++ +        V    L V    G + L +LVS   +    +   RI    L E   
Sbjct: 602  NTELVSDDSYKKSRVKHATLYVQNQTGLKNLFKLVSLSNV-SYFEGVARIPRKVLDEY-R 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NLQRHRGYDR 194
            EG+I+ +  + G +      +    A +    +   ++    +Y      +L +  G   
Sbjct: 660  EGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYDFIEVMPPAIYAPLIAKDLIKDEGAIE 719

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++A   + P++AT N  +++ ED    +++         +       +  +P 
Sbjct: 720  QLIKDLIEVANRLDKPVLATGNVHYINPEDAIYREIIVRALGQGAMINRPIGKGENAQPA 779

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P+ + +  +EM+  F+ L +       + NT  +A +   +  V   +   +I    D
Sbjct: 780  PLPEAHFRTTNEMLDEFAFLGKDLAYEIVVANTQAMANQIEEVEVVKKDLYTPYI----D 835

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              +++       KA            +           R++ EL+ I    F+  +L   
Sbjct: 836  RAEEQVAEMTYAKAFE----------LYGNPLPDIIDLRIEKELSSILGNGFAVIYLASQ 885

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------------ 403
              +  + +    VG  RGS   S  A  + IT+++P+    L                  
Sbjct: 886  MLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYLCPKCQHSEFITDGSYGSG 944

Query: 404  -----------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                   FE FL  D   +PD D++F  D +      V++ +G 
Sbjct: 945  FDLPDKECSECGTEYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGE 1004

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            +   +  T G++  + A   V +  +  Y++  R                          
Sbjct: 1005 QYAFRAGTVGTVADRTAYGFV-KGYERDYNKFYR-------------------------- 1037

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  VDRL   +  + G+ R+   H  GIV+      +    P+             
Sbjct: 1038 ----DAEVDRL---AMGVAGVKRNTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAAWQT 1090

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D   I  DD +   L +  
Sbjct: 1091 THFNFHDIDE-NVLKLDILGHDDPTMIRKLQDL-----SGIDPKDIRADDPDVMKLFSGT 1144

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1145 EVLGVTP-EQIGTSTGVLGIPEFGTNFVRGMVEETHPTTFAELLQLSGLSHGTDVWLGNA 1203

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   +   + VI  ++ +M     A L    + +  + +R+ M  KI EE   ++  
Sbjct: 1204 QDLIKEGIATLKTVIGCRDDIMVYLMHAGLDPKMAFTIMERVRKGMWLKISEE---ERNG 1260

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I    +N +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1261 YIQAMRENNVPDWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1315

Query: 792  MTLEMDNV---------EKIK--------------------------KFCQDARQFNIQI 816
             ++              + +K                          +   +  +     
Sbjct: 1316 FSIRAKAFELKTMSAGLDAVKARMEDIKEKRQRNEATNLENDLFTTLEIVNEMLERGFTF 1375

Query: 817  MPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                   +   +F +  + +     A++G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1376 GQLDLYKSQATEFLIEGDTLIPPFIALEGLGENVAKQLVAAREEGEFLSKTELRKR---G 1432

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E L   G L
Sbjct: 1433 GLSSTLVERLDEMGIL 1448



 Score = 78.1 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++  ++D  A    PA+AITD  N+ S      KA  
Sbjct: 333 MPEGQKRVEFHAHTNMSTMDAIPTVEELIDTAAFWGHPAVAITDHANVQSFPHGYHKAKK 392

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 393 AGIKAIF 399


>gi|167750041|ref|ZP_02422168.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702]
 gi|167657062|gb|EDS01192.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702]
          Length = 1605

 Score =  413 bits (1061), Expect = e-112,   Method: Composition-based stats.
 Identities = 172/905 (19%), Positives = 298/905 (32%), Gaps = 193/905 (21%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
                ++LV    G + L  L+S   L D   +  RI  S L +   EGLI+ +   +G +
Sbjct: 779  TYHQIILVKNKVGLKNLYRLISASNL-DYFYKKPRIPKSLLSQY-REGLIIGSACEAGEL 836

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYR--ESQVVQLAYTH 207
             RA     SQ   + + +F      + +  +   +   +    +  R     +VQL    
Sbjct: 837  FRAILEKESQEKIEEIASFYDYLEIQPIGNNMFLLRNGKVSSEEDLRDLNRAIVQLGDRL 896

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
              P+VAT +  F   ED    +VL A       +        P  Y +   EM+  F+ L
Sbjct: 897  GKPVVATCDVHFKDPEDAVFREVLQAGQGYEDFAN------QPPLYFRTTDEMLEEFAYL 950

Query: 268  PE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
             E  A E  +    R + +++V  PI         D   +E +    ++A A     L  
Sbjct: 951  GEEKAKEVVITNTNRIADMIEVVRPIPTGTYTPHIDGADEELQQLCWDRAHAWYGDDL-- 1008

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                     +   +RL  EL+ I +  F+  ++I    + +++KN   VG  RGS   SV
Sbjct: 1009 --------PETVEKRLKKELDSIIKHGFAVLYMIAQKLVAFSEKNGYLVG-SRGSVGSSV 1059

Query: 386  TAYALTITDIDPLR-----------------------------------------FSLLF 404
             A    I++++PL                                            + F
Sbjct: 1060 VAIMAGISEVNPLPPHYRCPKCRHNEFILDGSYGSGFDLPPKKCPNCDIDMIRDGHDIPF 1119

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  D    PD D++F  + + +V RY +  +G + V +  T  ++Q K A   V + 
Sbjct: 1120 ETFLGFDGDKSPDIDLNFSGEVQGKVHRYTEELFGKDHVFKAGTISAVQEKTAEGFVRKW 1179

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L+      +                                     +  ++    G+ R 
Sbjct: 1180 LEKKGMTANS----------------------------------AEISRLAAGCTGVKRT 1205

Query: 525  ASTHAAGIVI--GDRPLSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
             S H  G+V+   D  +     +        SD+  T F+   +    ++K D LG    
Sbjct: 1206 TSQHPGGMVVVPSDYEVYDFTAVQHPADKTESDMITTHFDFHALHDT-ILKLDELGHDVP 1264

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLES 625
            TL +   D    +     ++ +P  D +   L T+               GT GI +  +
Sbjct: 1265 TLYKHLEDMTGIK-----IADVPTSDPKVMELFTSTEPLGIKEEDLGVSSGTYGIPEFGT 1319

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
                Q L+  QP    D++ +  L     +                 +   LI   +   
Sbjct: 1320 PFTLQMLKDAQPKKFSDLLQISGLSHGTDVWLG--------------NAQELISDGICTI 1365

Query: 686  QGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
              VI  ++ +M       L    +    ++ R+   KK+  E                  
Sbjct: 1366 SEVIGCRDDIMVYLMHQGLEPKLAFKIMEITRKGNAKKLFNE-----------DIYKAFE 1414

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-- 800
            +      +    K   Y F K+HAAAY   + +  W K +YP EF +A +T   +N++  
Sbjct: 1415 ENNVPQWYIESCKKIKYMFPKAHAAAYVTGAVKLCWFKVYYPSEFYSAVLTKHTENIDVK 1474

Query: 801  -----------KIK-------------------KFCQDARQFNIQIMPPSVNTP-CVDFK 829
                       KI+                       +     I  +P          + 
Sbjct: 1475 TVLGGKESVRNKIQLIQSNPEATAKDKGMLDALLLIYEMMLRGITFLPVDYKKSRATTYA 1534

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            + D  +     A++G G   A  + E      F  LED  ++     +N  VL  L    
Sbjct: 1535 IEDGNLRLPFLAVEGCGENAAIKLKEVIDKGDFICLEDIQAQ---SGINSTVLSKLYDMN 1591

Query: 890  ALDCF 894
                 
Sbjct: 1592 VFGDL 1596



 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
           V L +H++ S ++   + + ++ +  A    A+AITD  N
Sbjct: 501 VELHMHTNMSDMDAVTAPSVLVKQAHAWGHKAVAITDHGN 540


>gi|150020931|ref|YP_001306285.1| DNA polymerase III PolC [Thermosipho melanesiensis BI429]
 gi|149793452|gb|ABR30900.1| DNA polymerase III, alpha subunit [Thermosipho melanesiensis BI429]
          Length = 1362

 Score =  412 bits (1060), Expect = e-112,   Method: Composition-based stats.
 Identities = 169/884 (19%), Positives = 327/884 (36%), Gaps = 179/884 (20%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             I +LV    G + L +LVS  ++    K    +    L +   EGL++ TG  SG I +
Sbjct: 539  HITILVRDKVGLKNLYKLVSDAHVK-YFKYVPFVPKKELIKY-REGLLLGTGCESGEIFQ 596

Query: 158  AFFFNSSQVAEKRLL---TFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVAT 214
            A   +S+      +L    + ++F     V+++  R   +    ++ +LA   +LP+V  
Sbjct: 597  ALTGSSTDEEILEMLKDYDYVEIFPLDTIVSVE--REVAKQVYKRLYELAKRLDLPVVMV 654

Query: 215  NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV----SIFSDLPEA 270
            +N+ FL  ED +A  VL++    +     D        YL+   EM+     IF D   A
Sbjct: 655  SNAHFLEPEDIKARHVLLSPIEKSNPHDDDLRDKDAKLYLRTTDEMMKEAFEIFEDEKIA 714

Query: 271  LENTVEIARRC-SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
             E  VE   +  + +++   PI  +        I +  + ++R+ ++   +         
Sbjct: 715  YEIVVENTNKIANNMIEDVKPIKRKLHPP----IIEGADEKVRSLSIKRAKELYGDPL-- 768

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                     +RL+ EL  I    ++  + I    ++ A ++   VG  RGS   S  AY 
Sbjct: 769  ----PDVIEKRLEKELESIIGHGYAVLYEIAHLIVKKANEDGYVVG-SRGSVGSSFVAYL 823

Query: 390  LTITDIDPLRFSLL---------------------------------------FERFLNP 410
            + IT+++PL    L                                       FE F+  
Sbjct: 824  MGITEVNPLPPHYLCPKCKYLEFSKDMGSGYDLPNKLCPKCGTKLEKTGQDIPFEVFMGF 883

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
                +PD D++F  + ++    Y+   +G + V +  T  ++  K+A+  V   +++   
Sbjct: 884  KGDKVPDIDLNFSGEYQERAHSYIVELFGKDNVLRAGTISTIAEKSAIGYVKSYMEV--- 940

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
                             +L                      + +++ + G+ R    H  
Sbjct: 941  --------------KGETLHQAEQ-----------------IRLAEMVAGVKRTTGQHPG 969

Query: 531  GIVIGDRPLS--QLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            G++I  + ++     P+        S++  T F  + I    L+K D LG    T+L+  
Sbjct: 970  GLMIVPKDMTVYDFTPIQYPANKKDSEMCTTHFAYESIHD-DLVKLDALGHDDPTMLKLL 1028

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQA 631
             ++       VD + +P DD +T  + ++               GT+GI +  ++ +++ 
Sbjct: 1029 YEYTG-----VDPTKVPMDDKKTLEIFSSLKPLKVKAEELGIDVGTIGIPEFGTNFVQEM 1083

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            L+  +P    +++ +  L       ++ + N +            +I         VI  
Sbjct: 1084 LKETRPKTFAELVRISGLSHGT---DVWLNNAQ-----------DIIKSGNATLSEVISC 1129

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            ++ +M I  + +G   S A  +   + K             IS   +  + +      F 
Sbjct: 1130 RDDIM-IYLINAGVEESRAFKIMENVRKGKG----------ISEDDEKLMREKNVPEWFI 1178

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD-------------- 797
               K   Y F K+HA AY  ++++ A+ K HYP+ + AA  +++ D              
Sbjct: 1179 QSCKKIKYLFPKAHAVAYVSMAFRIAYFKVHYPLAYYAAYFSIKGDEFSIETILRGIKSI 1238

Query: 798  ------------------NVEKIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYS 838
                              N EK+ +   +        +PP +       F +  N +   
Sbjct: 1239 KKKLAELNAQMKKDVKEKNEEKVLEAALEMYLRGYSFLPPDILKSDYRRFIIEGNELRIP 1298

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
            L  I GVG   A  I++A  +KPF S++D   R    K +   +
Sbjct: 1299 LNKIPGVGDNVALSIIQARMEKPFTSIDDLKKRTKLSKAHINTM 1342



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 34/65 (52%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S L+  + +  ++ K+      A+AITD  N+ S     ++A   GI+PI 
Sbjct: 257 VELHIHSKMSDLDAIVDIKEVVRKVKEWGWSAVAITDHGNVQSIPYLFEEAEKNGIKPIF 316

Query: 72  GCQLD 76
           G ++ 
Sbjct: 317 GTEMY 321


>gi|256845844|ref|ZP_05551302.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium
            sp. 3_1_36A2]
 gi|256719403|gb|EEU32958.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium
            sp. 3_1_36A2]
          Length = 1449

 Score =  412 bits (1060), Expect = e-112,   Method: Composition-based stats.
 Identities = 162/947 (17%), Positives = 329/947 (34%), Gaps = 179/947 (18%)

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            N+F  + F +K    G++ +       ++               ++ +I++LV T  G +
Sbjct: 576  NMF--IIFLEKYKEKGLEYMKDINTGFEVNVRK----------QSLKNIMVLVKTQAGLK 623

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----GPIDRAFFFNSSQ 165
             +  LVS  ++   G +  RI  S L E   EGLI+ +  ++     G +   +  +  +
Sbjct: 624  NMYRLVSEAHIKYFGNKKARIPKSVLVE-NREGLIIGSSLTAHFMNTGELVDLYLRHDLE 682

Query: 166  VAEKRLLTFK--KLFGDRLYVNLQRHRG--------YDRYRESQVVQLAYTHELPLVATN 215
              E+    +   +L     Y  L    G                   L     + + A++
Sbjct: 683  KLEEAAKFYDYIELLPKSTYNELIEKDGTGALGSYEEVEKMNKYFYNLGKKLGILVTASS 742

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALEN 273
            N  +L E +     +L+  +    V    +  +    Y +   EM+  FS L E  A E 
Sbjct: 743  NVHYLDENEDIIRSILLYGSG--TVYNSRQYSINNGFYFRTTDEMLQEFSYLGENVAKEV 800

Query: 274  TVEIARRCSFILQVH-APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
             V    + + +++    PI   F   + ++ ++        KA      R+    +    
Sbjct: 801  VVTNTNKIADMIESGIRPIPEGFYPPKMENAEEIVRTMTYEKAY-----RIYGDPL---- 851

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
                   RL+ ELN I    FS  +L     ++ +  N   VG  RGS   S+ A+ + I
Sbjct: 852  -PDIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGSSLVAFMMGI 909

Query: 393  TDIDPL-----------------------------------------RFSLLFERFLNPD 411
            T+++ L                                          +S+ FE F+   
Sbjct: 910  TEVNALYPHYICDNPECKYSEFIEREGVGIDLPDKICPKCNAKLRKDGYSIPFEVFMGFK 969

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
               +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V +        
Sbjct: 970  GDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVRKYF------ 1023

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                                        E    +     ++ + +  +G  +    H  G
Sbjct: 1024 ----------------------------EDNNLNAVRAEIIRLGRLCQGAKKTTGQHPGG 1055

Query: 532  IVIGD--RPLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            +VI      + +  P+ R    +      T ++   +++  L+K D LG    T ++   
Sbjct: 1056 MVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDEQ-LVKLDILGHDDPTTIK--- 1111

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
              L Q    +++  IP  D +T  + ++  +LG+   E  G      G+       +  +
Sbjct: 1112 --LLQEYTNMEIKDIPLADEDTLKIFSSTESLGVTP-EQIGTEIGTYGIPEFGTGFVRQM 1168

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQLLS-- 703
            +   RP     +V  +   +G    ++     +         +I  ++ +M         
Sbjct: 1169 LIDTRPTTFAELVRISGLSHGTNVWLNNAQEFVRNGQATLSQIITVRDDIMNYLIDQGLD 1228

Query: 704  -GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
               +    + +R+   KK  E  +K             + +    + +    +  +Y F 
Sbjct: 1229 NSDAFKIMEFVRKGKPKKEPENWEKYSAM---------MKEKNVPDWYIESCRRIEYMFP 1279

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------KIKKF----- 805
            K HA AY +++ + A+ K H P+ F AA ++ + D+ +            K+++      
Sbjct: 1280 KGHAVAYVMMAMRIAYFKVHQPLAFYAAFLSRKADDFDMEVMSRGILAKQKLEELSKEPK 1339

Query: 806  --------------CQDARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGTTTA 850
                            +     ++++P  +       F + DN+I   L  I G+G    
Sbjct: 1340 LDPKKKNEQAICEIVVEMEARGLELLPVDIYLSDGKKFTIEDNKIRIPLIGINGLGGAVI 1399

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
              I++   +  F S+ED   R   ++     L+++   GA+     +
Sbjct: 1400 DAIVKEREEGKFISVEDLKRRTKIQQPVVDKLKNI---GAISSLSET 1443



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L  H+  S + G   + +I+ +       AIAITD + + S     + A         
Sbjct: 331 VELHAHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYSVVHSYPAAFKTAKKLSTDEEK 390

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           ++ I GC++ +   +   +TN           +V  + T
Sbjct: 391 MKAIFGCEMYMIDDEAPMVTNPKDKKIDDEEFVVFDIET 429


>gi|260494375|ref|ZP_05814506.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium
            sp. 3_1_33]
 gi|260198521|gb|EEW96037.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium
            sp. 3_1_33]
          Length = 1449

 Score =  412 bits (1060), Expect = e-112,   Method: Composition-based stats.
 Identities = 161/947 (17%), Positives = 331/947 (34%), Gaps = 179/947 (18%)

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            N+F  + F +K    G++ +       ++               ++ ++++LV T  G +
Sbjct: 576  NMF--IIFLEKYKEKGLEYMKDINTGFEVN----------VKKQSLKNVMVLVKTQAGLK 623

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----GPIDRAFFFNSSQ 165
             +  LVS  ++   G +  RI  S L E   EGLI+ +  ++     G +   +  +  +
Sbjct: 624  NMYRLVSEAHIKYFGNKKARIPKSVLIE-NREGLIIGSSLTAHFMNTGELVDLYLRHDLE 682

Query: 166  VAEKRLLTFK--KLFGDRLYVNLQRHRG--------YDRYRESQVVQLAYTHELPLVATN 215
              E+    +   +L     Y  L    G                   L     + + A++
Sbjct: 683  KLEEAAKFYDYIELLPKSTYNELIEKDGTGALGSYEEVEKMNKYFYDLGKRLGILVTASS 742

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALEN 273
            N  +L E +     +L+  +    V    +  +    Y +   EM+  FS L E  A E 
Sbjct: 743  NVHYLDENEDIIRSILLYGSG--TVYNSRQYSINNGFYFRTTDEMLKEFSYLGEDEAKEV 800

Query: 274  TVEIARRCSFILQ-VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
             +    + S +++    PI   F   + ++ ++  ++    KA      R+    +    
Sbjct: 801  VITNTNKISDMIESEIRPIPEGFYPPKMENAEEIVKSMTYEKAY-----RIYGNPL---- 851

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              +    RL+ ELN I    FS  +L     ++ +  N   VG  RGS   S+ A+ + I
Sbjct: 852  -PEIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGSSLVAFMMGI 909

Query: 393  TDIDPL-----------------------------------------RFSLLFERFLNPD 411
            T+++ L                                          +S+ FE F+   
Sbjct: 910  TEVNALYPHYICDNPECKYSEFIEKEGVGIDLPDKICPKCGAKLRKDGYSIPFEVFMGFK 969

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
               +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V +        
Sbjct: 970  GDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVRKYF------ 1023

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                                        E    +     ++ + +  +G  +    H  G
Sbjct: 1024 ----------------------------EDNNLNAVRAEIIRLGRLCQGAKKTTGQHPGG 1055

Query: 532  IVIGD--RPLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            +VI      + +  P+ R    +      T ++   +++  L+K D LG    T ++   
Sbjct: 1056 MVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDEQ-LVKLDILGHDDPTTIK--- 1111

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
              L Q    +++  IP  D +T  + ++  +LG+   E  G      G+       +  +
Sbjct: 1112 --LLQEYTNMEIKDIPLADKDTLKIFSSTESLGVTP-EQIGTEIGTYGIPEFGTGFVRQM 1168

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQLLS-- 703
            +   RP     +V  +   +G    ++     +         +I  ++ +M         
Sbjct: 1169 LIDTRPTTFAELVRISGLSHGTNVWLNNAQEFVRNGQATLSQIITVRDDIMNYLIDQGLD 1228

Query: 704  -GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
               +    + +R+   KK  E  +K             + +    + +    +  +Y F 
Sbjct: 1229 NSDAFKIMEFVRKGKPKKEPENWEKYSAM---------MKEKNVPDWYIESCRRIEYMFP 1279

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------KIKKF----- 805
            K HA AY +++ + A+ K H P+ F AA ++ + D+ +            K+++      
Sbjct: 1280 KGHAVAYVMMAMRIAYFKVHQPLAFYAAFLSRKADDFDMEFMSRGILAKQKLEELSKEPK 1339

Query: 806  --------------CQDARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGTTTA 850
                            +     I+++P  +       F + D +I   L  I G+G    
Sbjct: 1340 LDPKKKNEQAICEIVVEMEARGIELLPVDIYLSDGKKFTIEDGKIRIPLIGINGLGGAVI 1399

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
              I++   +  F S+ED   R   ++     L+++   GA+     +
Sbjct: 1400 DAIVKEREEGKFISVEDLKRRTKMQQPVVDKLKNI---GAISSLSET 1443



 Score = 72.3 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L VH+  S + G   + +I+ +       AIAITD   + S     + A         
Sbjct: 331 VELHVHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYAVVHSYPAAFKTAKKLSTDEEK 390

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           ++ I GC++ +   +   +TN           +V  + T
Sbjct: 391 MKAIFGCEMYMIDDEAPMVTNPKDKKIDDEEFVVFDIET 429


>gi|259501583|ref|ZP_05744485.1| DNA polymerase III [Lactobacillus iners DSM 13335]
 gi|302191443|ref|ZP_07267697.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus iners AB-1]
 gi|259167101|gb|EEW51596.1| DNA polymerase III [Lactobacillus iners DSM 13335]
          Length = 1420

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 165/913 (18%), Positives = 319/913 (34%), Gaps = 202/913 (22%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   
Sbjct: 590  RAKPNHMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQ 647

Query: 153  GPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-----VVQLAY 205
            G +  +          +  R+  F ++     Y +L   +     +E Q     + +L  
Sbjct: 648  GDVFISMMQKGYDATREKARIYDFLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKLGK 707

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
               +P+VAT+++ ++ ++D     +L++       + + +    PD +     EM+  FS
Sbjct: 708  ELGIPVVATSDAHYIDKKDAIYRKILLSAQ----KANRGKNYELPDLHFYTTQEMLDAFS 763

Query: 266  DL------PEALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAV 316
             L         ++NT  IA +   +  + + + P  IE   KE + +  ++ +EL     
Sbjct: 764  FLDPKIAEEIVIKNTNMIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHELYG--- 820

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                              +  + RL++EL  I    ++  +LI    +  + K+   VG 
Sbjct: 821  --------------NPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG- 865

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFSLLFER--------------------- 406
             RGS   S+ A    IT+++PL         ++S  FE+                     
Sbjct: 866  SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCNADL 925

Query: 407  -----------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                       FL      +PD D++F  D +     Y++  +G +   +  T G++  K
Sbjct: 926  AKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADK 985

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V                            +   D++  +   L +  +DRL   S
Sbjct: 986  IAYGYV----------------------------KHYEDENELK---LRNAELDRL---S 1011

Query: 516  QKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIK 570
            Q   G+ R    H AGIV+   D  +    P+             T F+   I    ++K
Sbjct: 1012 QGASGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILK 1070

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKG 616
            FD LG    T+++   D        VD   IP  D     L +                G
Sbjct: 1071 FDILGHDDPTMIRMLQDL-----SGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTG 1125

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            TLG+ +  +  +R  LE  +P    +++ +  L     +      +    G  K+ ++  
Sbjct: 1126 TLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINKGICKLKNVIG 1185

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
              D ++ +     +  E           +S  E+    + +  +    + K K       
Sbjct: 1186 CRDNIMTDLIHWDVPPEVA---------FSTMESVRHGKGISDENMAILSKNKN------ 1230

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
                       + +        Y F K+HA AY +++ + AW K +YPV +  + +++  
Sbjct: 1231 ---------IPDWYIQSCLKIKYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRA 1281

Query: 797  DNVEKIK---------------------------------KFCQDARQFNIQIMPPSVNT 823
            D  + +                                  +   +  +  I I    +  
Sbjct: 1282 DLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEK 1341

Query: 824  P-CVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
               ++FK+  ++ I      + G+G   A+ I+ A  ++PF S ED   R    K+++ +
Sbjct: 1342 SDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTI 1398

Query: 882  LESLVFAGALDCF 894
            +E     G LD  
Sbjct: 1399 MEYFENNGVLDGL 1411



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 317 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 376

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++     L + N     +     ++  V T
Sbjct: 377 GYEANMINDQALLVLNPANMDYRGQEYVIFDVET 410


>gi|310779125|ref|YP_003967458.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926]
 gi|309748448|gb|ADO83110.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926]
          Length = 1442

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 159/925 (17%), Positives = 324/925 (35%), Gaps = 200/925 (21%)

Query: 94   PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG---- 149
                +++LLV    G + L +LVS  ++   G +  RI  S ++E   EG+I+       
Sbjct: 601  QDTSNVMLLVKNNTGLKNLYKLVSEAHINYYGSKKPRIPRSIIEE-NREGIIIGAAMSMH 659

Query: 150  -GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ--------- 199
             G+ G +  A+F  +    ++++  +        Y+ LQ    Y    E +         
Sbjct: 660  FGNEGELASAYFRYNLDCIDEKINFYD-------YIELQPRETYTELYEKEGTGTISSFD 712

Query: 200  --------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                    + +LA +    ++AT+N  +L EED+    +L+     +V  +K        
Sbjct: 713  NIEKANKSLYKLAKSKGKKVIATSNVHYLDEEDHRVRSILL-YGSGSVFREKQYNSDNK- 770

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEI--ARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             Y ++ +EM+  FS L E +   + I      +  ++   P+   F   + D+ ++  + 
Sbjct: 771  FYFRSTNEMLREFSYLGEDVAREIVIESTNAIADEVEKIQPVPSGFFPPKIDNAEEIVKE 830

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
               NKA            I      +   QRL+ EL  I    FS  +L     ++ +  
Sbjct: 831  MTYNKAYK----------IYGNPLPEIVAQRLERELKAIVGNGFSVLYLSAQKLVKESLD 880

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPL------------------------------- 398
            N   VG  RGS   S+ A+ + IT+++ L                               
Sbjct: 881  NGYLVG-SRGSVGSSLVAFMMDITEVNALYPHYICVDENCRYSEFMDKEGAGVDLPDKIC 939

Query: 399  ----------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
                        ++ FE F+  +   +PD D++F  + + E+ RY +  +G E V +  T
Sbjct: 940  PKCGKELKKEGHAIPFEVFMGFNGDKVPDIDLNFSGEYQSEIHRYCERLFGKENVFKAGT 999

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
              +L  K A   V +                                    E        
Sbjct: 1000 ISTLAEKNAYGYVKKYF----------------------------------EEHNISVRN 1025

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYR---DVRSDLPVTQFNMKWI 563
              ++ +++K EG  +    H  G+++      + +  P+ +   D +++   T F+   +
Sbjct: 1026 AEIIRLAKKCEGAKKTTGQHPGGMIVVPQGHSIYEFCPVQKPANDAKNESITTHFDYHVM 1085

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK-------- 615
            ++  L+K D LG    T ++   ++       VD+  +P  D ET  + +          
Sbjct: 1086 DEQ-LVKLDILGHDDPTTIKLLQEYTG-----VDIYDVPLADPETLKIFSGTESLGVTPD 1139

Query: 616  ------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
                  GT G+ +  +  +RQ L    P    +++ +  L     +         + G+ 
Sbjct: 1140 QINSVIGTYGVPEFGTQFVRQMLVDTMPTTFAELVRISGLSHGTDVWLNNAQEFVRKGEA 1199

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +  I  + D ++                + +  G +    + +R+    K  +      
Sbjct: 1200 TLSEIISVRDDIMNYL-----------IDSGIEKGTAFKIMEFVRKGRPSKEAD------ 1242

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                       + +    + +    +   Y F K HA AY  ++ + A+ K H+P+ F A
Sbjct: 1243 ---AWKDYSKLMKEHNVPDWYIESCRRIKYMFPKGHAVAYVTMAMRIAYFKVHHPLAFYA 1299

Query: 790  ASMTLEMDNVEK-------------------------------IKKFCQDARQFNIQIMP 818
            A ++ + D+ +                                + +   +      + + 
Sbjct: 1300 AYLSRKADDFDSEFMLSLNSVKEKIDELSKEMKLDVRQKSQLAVSEIILEMHARGFEFLG 1359

Query: 819  PSVNTPC-VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
              +       F + D++I   L A+ G+G     ++++      F S ED   R  + + 
Sbjct: 1360 IDIYKSDGFKFTIEDDKIRIPLVALNGLGGAVVENVIKEREIGKFLSYEDLKRRTKASQT 1419

Query: 878  NRRVLESLVFAGALDCFGYSRMQLL 902
               V+E L    A+D    +  + L
Sbjct: 1420 ---VIEKLKIVNAIDGLSDTNQKSL 1441



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 36/95 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S + G++   N++ +       A+A+TD   + S     + A  + ++ I 
Sbjct: 329 VELHTHTKMSDMVGSIDAKNLVKRALKYGHKALAVTDYGGVHSFPFVYKAAKGSDLKVIF 388

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA 106
           GC   +       + N           +V  + T 
Sbjct: 389 GCDAYMVDDSRPMVENPKDVLIQDETYVVYDLETM 423


>gi|262066554|ref|ZP_06026166.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
            33693]
 gi|291379736|gb|EFE87254.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
            33693]
          Length = 1449

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 168/947 (17%), Positives = 334/947 (35%), Gaps = 179/947 (18%)

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            N+F  + F +K    GI+ +       ++               ++ +I++ V T EG +
Sbjct: 576  NMF--IIFLEKYKEKGIEYLKDINKGFEVN----------VKKQSLRNIMVQVKTQEGLK 623

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----GPIDRAFFFNSSQ 165
             + +LVS  ++   G +  RI  S L+E   EGLI+ +  S+     G +   +     +
Sbjct: 624  NMYKLVSEGHIKYFGNKKARIPKSVLKE-NREGLIVGSSLSAHFLNTGELVELYLRRDLE 682

Query: 166  VAEKRLLTFK--KLFGDRLYVNLQRHRG------YD--RYRESQVVQLAYTHELPLVATN 215
              E+    +   +L     Y  L    G      YD           L     + + A++
Sbjct: 683  KLEETAKFYDYIELLPKSTYNELIEKEGTGSLASYDDVEKMNKYFYDLGKRLGILVTASS 742

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALEN 273
            N  +L E +     +L+  +    V    +  +    Y +   EM+  FS L E  A E 
Sbjct: 743  NVHYLDENEDIIRSILLYGSG--TVYNSRQYSINNGFYFRTTDEMLKEFSYLGEKEAKEV 800

Query: 274  TVEIARRCSFILQVH-APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
             +    + + +++    PI   F   + ++ ++        KA      R+    +    
Sbjct: 801  IITNTNKIADMVEEGIKPIPEGFFPPKMENAEEIVRTMTYEKAY-----RIYGDPL---- 851

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
                  +RL+ ELN I    FS  +L     ++ +  N   VG  RGS   S+ A+ + I
Sbjct: 852  -PDIVSKRLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGSSLVAFMMGI 909

Query: 393  TDIDPL-----------------------------------------RFSLLFERFLNPD 411
            T+++ L                                          +S+ FE F+   
Sbjct: 910  TEVNALYPHYICDNPECKHSEFIEKEGVGIDLPDKICPNCGAKLRKDGYSIPFEVFMGFK 969

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
               +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V +        
Sbjct: 970  GDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVRKYF------ 1023

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                                        E    +     ++ + +  +G  +    H  G
Sbjct: 1024 ----------------------------EDNNLNAVRAEIIRLGRLCQGAKKTTGQHPGG 1055

Query: 532  IVIGD--RPLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            +VI      + +  P+ R    +      T ++   +++  L+K D LG    T ++   
Sbjct: 1056 MVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDEQ-LVKLDILGHDDPTTIK--- 1111

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
              L Q    +++  IP  D +T  + ++  +LG+   E  G      G+       +  +
Sbjct: 1112 --LLQEYTNMEVKDIPLADKDTLKIFSSTESLGVSPEEI-GTEIGTYGIPEFGTGFVRQM 1168

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQLLS-- 703
            +   RP     +V  +   +G    ++     +         +I  ++ +M         
Sbjct: 1169 LIDTRPTTFAELVRISGLSHGTNVWLNNAQEFVRNGQATLSQIITVRDDIMNYLIDQGLD 1228

Query: 704  -GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
               +    + +R+   KK  E  +K           N + +    + +    +  +Y F 
Sbjct: 1229 NSDAFKIMEFVRKGKPKKEPENWEKY---------SNMMKEKNVPDWYIESCRRIEYMFP 1279

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------KIKKF----- 805
            K HA AY +++ + A+ K H P+ F AA ++ + D+ +            K+++      
Sbjct: 1280 KGHAVAYVMMAMRIAYFKVHQPLAFYAAFLSRKADDFDMEVMSKGVLAKQKLEELSKEPK 1339

Query: 806  --------------CQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTA 850
                            +     I+++P  +       FK+ D++I   L  I G+G    
Sbjct: 1340 LDPKKKNEQAICEIVVELEARGIELLPVDIYLSEGRKFKIEDDKIRIPLIGISGLGGAVI 1399

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +I++   +  F S+ED   R    +     L S+   GA+     +
Sbjct: 1400 ENILKEREEGKFISVEDLKRRTKMSQTVADKLRSI---GAISSLSET 1443



 Score = 74.2 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L  H+  S + G   + +++ +       AIAITD + + S     + A         
Sbjct: 331 VELHTHTKMSEMVGVTDVEDLIKRAKEYGHKAIAITDYSVVHSYPAAYKTAKKLSKDDDK 390

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           ++ I GC++ +   + L +TN           +V  + T
Sbjct: 391 MKVIFGCEMYMIDDEALMITNPKDKKIDEEEFVVFDIET 429


>gi|312871361|ref|ZP_07731457.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 3008A-a]
 gi|312872402|ref|ZP_07732471.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 2062A-h1]
 gi|311091984|gb|EFQ50359.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 2062A-h1]
 gi|311093113|gb|EFQ51461.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 3008A-a]
          Length = 1420

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 165/913 (18%), Positives = 319/913 (34%), Gaps = 202/913 (22%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   
Sbjct: 590  RAKPNHMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQ 647

Query: 153  GPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-----VVQLAY 205
            G +  +          +  R+  F ++     Y +L   +     +E Q     + +L  
Sbjct: 648  GDVFISMMQKGYDATREKARIYDFLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKLGK 707

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
               +P+VAT+++ ++ ++D     +L++       + + +    PD +     EM+  FS
Sbjct: 708  ELGIPVVATSDAHYIDKKDAIYRKILLSAQ----KANRGKNYELPDLHFYTTQEMLDAFS 763

Query: 266  DL------PEALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAV 316
             L         ++NT  IA +   +  + + + P  IE   KE + +  ++ +EL     
Sbjct: 764  FLDPKIAEEIVIKNTNMIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHELYG--- 820

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                              +  + RL++EL  I    ++  +LI    +  + K+   VG 
Sbjct: 821  --------------NPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG- 865

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFSLLFER--------------------- 406
             RGS   S+ A    IT+++PL         ++S  FE+                     
Sbjct: 866  SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCNADL 925

Query: 407  -----------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                       FL      +PD D++F  D +     Y++  +G +   +  T G++  K
Sbjct: 926  AKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADK 985

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V                            +   D++  +   L +  +DRL   S
Sbjct: 986  IAYGYV----------------------------KHYEDENELK---LRNAELDRL---S 1011

Query: 516  QKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIK 570
            Q   G+ R    H AGIV+   D  +    P+             T F+   I    ++K
Sbjct: 1012 QGASGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILK 1070

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKG 616
            FD LG    T+++   D        VD   IP  D     L +                G
Sbjct: 1071 FDILGHDDPTMIRMLQDL-----SGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTG 1125

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            TLG+ +  +  +R  LE  +P    +++ +  L     +      +    G  K+ ++  
Sbjct: 1126 TLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINKGICKLKNVIG 1185

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
              D ++ +     +  E           +S  E+    + +  +    + K K       
Sbjct: 1186 CRDNIMTDLIHWDVPPEVA---------FSTMESVRHGKGISDENMAILSKNKN------ 1230

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
                       + +        Y F K+HA AY +++ + AW K +YPV +  + +++  
Sbjct: 1231 ---------IPDWYIQSCLKIKYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRA 1281

Query: 797  DNVEKIK---------------------------------KFCQDARQFNIQIMPPSVNT 823
            D  + +                                  +   +  +  I I    +  
Sbjct: 1282 DLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEK 1341

Query: 824  P-CVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
               ++FK+  ++ I      + G+G   A+ I+ A  ++PF S ED   R    K+++ +
Sbjct: 1342 SDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTI 1398

Query: 882  LESLVFAGALDCF 894
            +E     G LD  
Sbjct: 1399 MEYFENNGVLDGL 1411



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 317 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 376

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++     L + N     +     ++  V T
Sbjct: 377 GYEANMINDQALLVLNPANMDYRGQEYVIFDVET 410


>gi|312875787|ref|ZP_07735779.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 2053A-b]
 gi|311088691|gb|EFQ47143.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 2053A-b]
          Length = 1424

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 165/913 (18%), Positives = 319/913 (34%), Gaps = 202/913 (22%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   
Sbjct: 594  RAKPNHMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQ 651

Query: 153  GPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-----VVQLAY 205
            G +  +          +  R+  F ++     Y +L   +     +E Q     + +L  
Sbjct: 652  GDVFISMMQKGYDATREKARIYDFLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKLGK 711

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
               +P+VAT+++ ++ ++D     +L++       + + +    PD +     EM+  FS
Sbjct: 712  ELGIPVVATSDAHYIDKKDAIYRKILLSAQ----KANRGKNYELPDLHFYTTQEMLDAFS 767

Query: 266  DL------PEALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAV 316
             L         ++NT  IA +   +  + + + P  IE   KE + +  ++ +EL     
Sbjct: 768  FLDPKIAEEIVIKNTNMIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHELYG--- 824

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                              +  + RL++EL  I    ++  +LI    +  + K+   VG 
Sbjct: 825  --------------NPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG- 869

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFSLLFER--------------------- 406
             RGS   S+ A    IT+++PL         ++S  FE+                     
Sbjct: 870  SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCNADL 929

Query: 407  -----------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                       FL      +PD D++F  D +     Y++  +G +   +  T G++  K
Sbjct: 930  AKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADK 989

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V                            +   D++  +   L +  +DRL   S
Sbjct: 990  IAYGYV----------------------------KHYEDENELK---LRNAELDRL---S 1015

Query: 516  QKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIK 570
            Q   G+ R    H AGIV+   D  +    P+             T F+   I    ++K
Sbjct: 1016 QGASGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILK 1074

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKG 616
            FD LG    T+++   D        VD   IP  D     L +                G
Sbjct: 1075 FDILGHDDPTMIRMLQDL-----SGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTG 1129

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            TLG+ +  +  +R  LE  +P    +++ +  L     +      +    G  K+ ++  
Sbjct: 1130 TLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINKGICKLKNVIG 1189

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
              D ++ +     +  E           +S  E+    + +  +    + K K       
Sbjct: 1190 CRDNIMTDLIHWDVPPEVA---------FSTMESVRHGKGISDENMAILSKNKN------ 1234

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
                       + +        Y F K+HA AY +++ + AW K +YPV +  + +++  
Sbjct: 1235 ---------IPDWYIQSCLKIKYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRA 1285

Query: 797  DNVEKIK---------------------------------KFCQDARQFNIQIMPPSVNT 823
            D  + +                                  +   +  +  I I    +  
Sbjct: 1286 DLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEK 1345

Query: 824  P-CVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
               ++FK+  ++ I      + G+G   A+ I+ A  ++PF S ED   R    K+++ +
Sbjct: 1346 SDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTI 1402

Query: 882  LESLVFAGALDCF 894
            +E     G LD  
Sbjct: 1403 MEYFENNGVLDGL 1415



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 321 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 380

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++     L + N     +     ++  V T
Sbjct: 381 GYEANMINDQALLVLNPANMDYRGQEYVIFDVET 414


>gi|315653430|ref|ZP_07906352.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
 gi|315489355|gb|EFU78995.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
          Length = 1424

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 165/913 (18%), Positives = 319/913 (34%), Gaps = 202/913 (22%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   
Sbjct: 594  RAKPNHMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQ 651

Query: 153  GPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-----VVQLAY 205
            G +  +          +  R+  F ++     Y +L   +     +E Q     + +L  
Sbjct: 652  GDVFISMMQKGYDATREKARIYDFLEVQPPATYQHLLDDKLIKDKKELQEIITNIYKLGK 711

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
               +P+VAT+++ ++ ++D     +L++       + + +    PD +     EM+  FS
Sbjct: 712  ELGIPVVATSDAHYIDKKDAIYRKILLSAQ----KANRGKNYELPDLHFYTTQEMLDAFS 767

Query: 266  DL------PEALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAV 316
             L         ++NT  IA +   +  + + + P  IE   KE + +  ++ +EL     
Sbjct: 768  FLDPKIAEEIVIKNTNMIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHELYG--- 824

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                              +  + RL++EL  I    ++  +LI    +  + K+   VG 
Sbjct: 825  --------------NPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG- 869

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFSLLFER--------------------- 406
             RGS   S+ A    IT+++PL         ++S  FE+                     
Sbjct: 870  SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCNADL 929

Query: 407  -----------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                       FL      +PD D++F  D +     Y++  +G +   +  T G++  K
Sbjct: 930  AKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADK 989

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V                            +   D++  +   L +  +DRL   S
Sbjct: 990  IAYGYV----------------------------KHYEDENELK---LRNAELDRL---S 1015

Query: 516  QKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIK 570
            Q   G+ R    H AGIV+   D  +    P+             T F+   I    ++K
Sbjct: 1016 QGASGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILK 1074

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKG 616
            FD LG    T+++   D        VD   IP  D     L +                G
Sbjct: 1075 FDILGHDDPTMIRMLQDL-----SGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTG 1129

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            TLG+ +  +  +R  LE  +P    +++ +  L     +      +    G  K+ ++  
Sbjct: 1130 TLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINKGICKLKNVIG 1189

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
              D ++ +     +  E           +S  E+    + +  +    + K K       
Sbjct: 1190 CRDNIMTDLIHWDVPPEVA---------FSTMESVRHGKGISDENMAILSKNKN------ 1234

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
                       + +        Y F K+HA AY +++ + AW K +YPV +  + +++  
Sbjct: 1235 ---------IPDWYIQSCLKIKYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRA 1285

Query: 797  DNVEKIK---------------------------------KFCQDARQFNIQIMPPSVNT 823
            D  + +                                  +   +  +  I I    +  
Sbjct: 1286 DLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEK 1345

Query: 824  P-CVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
               ++FK+  ++ I      + G+G   A+ I+ A  ++PF S ED   R    K+++ +
Sbjct: 1346 SDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTI 1402

Query: 882  LESLVFAGALDCF 894
            +E     G LD  
Sbjct: 1403 MEYFENNGVLDGL 1415



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 321 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 380

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++     L + N     +     ++  V T
Sbjct: 381 GYEANMINDQALLVLNPANMDYRGQEYVIFDVET 414


>gi|312873343|ref|ZP_07733396.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 2052A-d]
 gi|311091133|gb|EFQ49524.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 2052A-d]
          Length = 1420

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 165/913 (18%), Positives = 319/913 (34%), Gaps = 202/913 (22%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   
Sbjct: 590  RAKPNHMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQ 647

Query: 153  GPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-----VVQLAY 205
            G +  +          +  R+  F ++     Y +L   +     +E Q     + +L  
Sbjct: 648  GDVFISMMQKGYDATREKARIYDFLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKLGK 707

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
               +P+VAT+++ ++ ++D     +L++       + + +    PD +     EM+  FS
Sbjct: 708  ELGIPVVATSDAHYIDKKDAIYRKILLSAQ----KANRGKNYELPDLHFYTTQEMLDAFS 763

Query: 266  DL------PEALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAV 316
             L         ++NT  IA +   +  + + + P  IE   KE + +  ++ +EL     
Sbjct: 764  FLDPKIAEEIVIKNTNIIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHELYG--- 820

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                              +  + RL++EL  I    ++  +LI    +  + K+   VG 
Sbjct: 821  --------------NPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG- 865

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFSLLFER--------------------- 406
             RGS   S+ A    IT+++PL         ++S  FE+                     
Sbjct: 866  SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCNADL 925

Query: 407  -----------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                       FL      +PD D++F  D +     Y++  +G +   +  T G++  K
Sbjct: 926  AKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADK 985

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V                            +   D++  +   L +  +DRL   S
Sbjct: 986  IAYGYV----------------------------KHYEDENELK---LRNAELDRL---S 1011

Query: 516  QKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIK 570
            Q   G+ R    H AGIV+   D  +    P+             T F+   I    ++K
Sbjct: 1012 QGASGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILK 1070

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKG 616
            FD LG    T+++   D        VD   IP  D     L +                G
Sbjct: 1071 FDILGHDDPTMIRMLQDL-----SGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTG 1125

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            TLG+ +  +  +R  LE  +P    +++ +  L     +      +    G  K+ ++  
Sbjct: 1126 TLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINKGICKLKNVIG 1185

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
              D ++ +     +  E           +S  E+    + +  +    + K K       
Sbjct: 1186 CRDNIMTDLIHWDVPPEVA---------FSTMESVRHGKGISDENMAILSKNKN------ 1230

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
                       + +        Y F K+HA AY +++ + AW K +YPV +  + +++  
Sbjct: 1231 ---------IPDWYIQSCLKIKYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRA 1281

Query: 797  DNVEKIK---------------------------------KFCQDARQFNIQIMPPSVNT 823
            D  + +                                  +   +  +  I I    +  
Sbjct: 1282 DLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEK 1341

Query: 824  P-CVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
               ++FK+  ++ I      + G+G   A+ I+ A  ++PF S ED   R    K+++ +
Sbjct: 1342 SDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTI 1398

Query: 882  LESLVFAGALDCF 894
            +E     G LD  
Sbjct: 1399 MEYFENNGVLDGL 1411



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 317 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 376

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++     L + N     +     ++  V T
Sbjct: 377 GYEANMINDQALLVLNPANMDYRGQEYVIFDVET 410


>gi|309807200|ref|ZP_07701174.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LactinV 03V1-b]
 gi|308166421|gb|EFO68626.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LactinV 03V1-b]
          Length = 1424

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 165/913 (18%), Positives = 319/913 (34%), Gaps = 202/913 (22%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   
Sbjct: 594  RAKPNHMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQ 651

Query: 153  GPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-----VVQLAY 205
            G +  +          +  R+  F ++     Y +L   +     +E Q     + +L  
Sbjct: 652  GDVFISMMQKGYDATREKARIYDFLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKLGK 711

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
               +P+VAT+++ ++ ++D     +L++       + + +    PD +     EM+  FS
Sbjct: 712  ELGIPVVATSDAHYIDKKDAIYRKILLSAQ----KANRGKNYELPDLHFYTTQEMLDAFS 767

Query: 266  DL------PEALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAV 316
             L         ++NT  IA +   +  + + + P  IE   KE + +  ++ +EL     
Sbjct: 768  FLDPKIAEEIVIKNTNMIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHELYG--- 824

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                              +  + RL++EL  I    ++  +LI    +  + K+   VG 
Sbjct: 825  --------------NPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG- 869

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFSLLFER--------------------- 406
             RGS   S+ A    IT+++PL         ++S  FE+                     
Sbjct: 870  SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCNADL 929

Query: 407  -----------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                       FL      +PD D++F  D +     Y++  +G +   +  T G++  K
Sbjct: 930  AKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADK 989

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V                            +   D++  +   L +  +DRL   S
Sbjct: 990  IAYGYV----------------------------KHYEDENELK---LRNAELDRL---S 1015

Query: 516  QKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIK 570
            Q   G+ R    H AGIV+   D  +    P+             T F+   I    ++K
Sbjct: 1016 QGASGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILK 1074

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKG 616
            FD LG    T+++   D        VD   IP  D     L +                G
Sbjct: 1075 FDILGHDDPTMIRMLQDL-----SGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTG 1129

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            TLG+ +  +  +R  LE  +P    +++ +  L     +      +    G  K+ ++  
Sbjct: 1130 TLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINKGICKLKNVIG 1189

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
              D ++ +     +  E           +S  E+    + +  +    + K K       
Sbjct: 1190 CRDNIMTDLIHWDVPPEVA---------FSTMESVRHGKGISDENMAILSKNKN------ 1234

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
                       + +        Y F K+HA AY +++ + AW K +YPV +  + +++  
Sbjct: 1235 ---------IPDWYIQSCLKIKYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRA 1285

Query: 797  DNVEKIK---------------------------------KFCQDARQFNIQIMPPSVNT 823
            D  + +                                  +   +  +  I I    +  
Sbjct: 1286 DLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEK 1345

Query: 824  P-CVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
               ++FK+  ++ I      + G+G   A+ I+ A  ++PF S ED   R    K+++ +
Sbjct: 1346 SDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTI 1402

Query: 882  LESLVFAGALDCF 894
            +E     G LD  
Sbjct: 1403 MEYFENNGVLDGL 1415



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 321 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 380

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++     L + N     +     ++  V T
Sbjct: 381 GYEANMINDQALLVLNPANMDYRGQEYVIFDVET 414


>gi|325911796|ref|ZP_08174200.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners UPII 143-D]
 gi|325476302|gb|EGC79464.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners UPII 143-D]
          Length = 1416

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 165/913 (18%), Positives = 319/913 (34%), Gaps = 202/913 (22%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   
Sbjct: 586  RAKPNHMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQ 643

Query: 153  GPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-----VVQLAY 205
            G +  +          +  R+  F ++     Y +L   +     +E Q     + +L  
Sbjct: 644  GDVFISMMQKGYDATREKARIYDFLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKLGK 703

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
               +P+VAT+++ ++ ++D     +L++       + + +    PD +     EM+  FS
Sbjct: 704  ELGIPVVATSDAHYIDKKDAIYRKILLSAQ----KANRGKNYELPDLHFYTTQEMLDAFS 759

Query: 266  DL------PEALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAV 316
             L         ++NT  IA +   +  + + + P  IE   KE + +  ++ +EL     
Sbjct: 760  FLDPKIAEEIVIKNTNMIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHELYG--- 816

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                              +  + RL++EL  I    ++  +LI    +  + K+   VG 
Sbjct: 817  --------------NPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG- 861

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFSLLFER--------------------- 406
             RGS   S+ A    IT+++PL         ++S  FE+                     
Sbjct: 862  SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCNADL 921

Query: 407  -----------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                       FL      +PD D++F  D +     Y++  +G +   +  T G++  K
Sbjct: 922  AKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADK 981

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V                            +   D++  +   L +  +DRL   S
Sbjct: 982  IAYGYV----------------------------KHYEDENELK---LRNAELDRL---S 1007

Query: 516  QKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIK 570
            Q   G+ R    H AGIV+   D  +    P+             T F+   I    ++K
Sbjct: 1008 QGASGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILK 1066

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKG 616
            FD LG    T+++   D        VD   IP  D     L +                G
Sbjct: 1067 FDILGHDDPTMIRMLQDL-----SGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTG 1121

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            TLG+ +  +  +R  LE  +P    +++ +  L     +      +    G  K+ ++  
Sbjct: 1122 TLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINKGICKLKNVIG 1181

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
              D ++ +     +  E           +S  E+    + +  +    + K K       
Sbjct: 1182 CRDNIMTDLIHWDVPPEVA---------FSTMESVRHGKGISDENMAILSKNKN------ 1226

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
                       + +        Y F K+HA AY +++ + AW K +YPV +  + +++  
Sbjct: 1227 ---------IPDWYIQSCLKIKYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRA 1277

Query: 797  DNVEKIK---------------------------------KFCQDARQFNIQIMPPSVNT 823
            D  + +                                  +   +  +  I I    +  
Sbjct: 1278 DLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEK 1337

Query: 824  P-CVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
               ++FK+  ++ I      + G+G   A+ I+ A  ++PF S ED   R    K+++ +
Sbjct: 1338 SDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTI 1394

Query: 882  LESLVFAGALDCF 894
            +E     G LD  
Sbjct: 1395 MEYFENNGVLDGL 1407



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 313 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 372

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++     L + N     +     ++  V T
Sbjct: 373 GYEANMINDQALLVLNPANMDYRGQEYVIFDVET 406


>gi|309809542|ref|ZP_07703400.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners SPIN 2503V10-D]
 gi|308170214|gb|EFO72249.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners SPIN 2503V10-D]
          Length = 1424

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 165/913 (18%), Positives = 319/913 (34%), Gaps = 202/913 (22%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   
Sbjct: 594  RAKPNHMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQ 651

Query: 153  GPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-----VVQLAY 205
            G +  +          +  R+  F ++     Y +L   +     +E Q     + +L  
Sbjct: 652  GDVFISMMQKGYDATREKARIYDFLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKLGK 711

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
               +P+VAT+++ ++ ++D     +L++       + + +    PD +     EM+  FS
Sbjct: 712  ELGIPVVATSDAHYIDKKDAIYRKILLSAQ----KANRGKNYELPDLHFYTTQEMLDAFS 767

Query: 266  DL------PEALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAV 316
             L         ++NT  IA +   +  + + + P  IE   KE + +  ++ +EL     
Sbjct: 768  FLNPKIAEEIVIKNTNIIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHELYG--- 824

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                              +  + RL++EL  I    ++  +LI    +  + K+   VG 
Sbjct: 825  --------------NPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG- 869

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFSLLFER--------------------- 406
             RGS   S+ A    IT+++PL         ++S  FE+                     
Sbjct: 870  SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCNADL 929

Query: 407  -----------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                       FL      +PD D++F  D +     Y++  +G +   +  T G++  K
Sbjct: 930  AKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADK 989

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V                            +   D++  +   L +  +DRL   S
Sbjct: 990  IAYGYV----------------------------KHYEDENELK---LRNAELDRL---S 1015

Query: 516  QKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIK 570
            Q   G+ R    H AGIV+   D  +    P+             T F+   I    ++K
Sbjct: 1016 QGASGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILK 1074

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKG 616
            FD LG    T+++   D        VD   IP  D     L +                G
Sbjct: 1075 FDILGHDDPTMIRMLQDL-----SGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTG 1129

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            TLG+ +  +  +R  LE  +P    +++ +  L     +      +    G  K+ ++  
Sbjct: 1130 TLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINKGICKLKNVIG 1189

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
              D ++ +     +  E           +S  E+    + +  +    + K K       
Sbjct: 1190 CRDNIMTDLIHWDVPPEVA---------FSTMESVRHGKGISDENMAILSKNKN------ 1234

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
                       + +        Y F K+HA AY +++ + AW K +YPV +  + +++  
Sbjct: 1235 ---------IPDWYIQSCLKIKYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRA 1285

Query: 797  DNVEKIK---------------------------------KFCQDARQFNIQIMPPSVNT 823
            D  + +                                  +   +  +  I I    +  
Sbjct: 1286 DLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEK 1345

Query: 824  P-CVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
               ++FK+  ++ I      + G+G   A+ I+ A  ++PF S ED   R    K+++ +
Sbjct: 1346 SDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTI 1402

Query: 882  LESLVFAGALDCF 894
            +E     G LD  
Sbjct: 1403 MEYFENNGVLDGL 1415



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 321 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 380

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++     L + N     +     ++  V T
Sbjct: 381 GYEANMINDQALLVLNPANMDYRGQEYVIFDVET 414


>gi|317471587|ref|ZP_07930931.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
 gi|316900902|gb|EFV22872.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
          Length = 1478

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 169/910 (18%), Positives = 308/910 (33%), Gaps = 177/910 (19%)

Query: 88   QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML 147
            +           ++LV    G   L  LVS  ++     +  R+  S + +   EGLI+ 
Sbjct: 633  EDFIKKGRTYHGIILVKNNTGRVNLNRLVSESHVR-YFNRRPRMPKSLINKY-REGLIIG 690

Query: 148  TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHR---GYDRYRE- 197
            +   +G +  A     S+    +++ F           ++  +   RH     ++  R  
Sbjct: 691  SACEAGELYSAIVDQRSEEEIAKIVEFYDYLEIQPEGNNQFMIESARHENVCSFEDIRNF 750

Query: 198  -SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKN 256
              ++V+L  T   P+ AT +  FL  +D     +LMA                P  Y + 
Sbjct: 751  NRKIVELGETFRKPVAATCDVHFLDPDDSIYRAILMAGKGFKDADS------QPPLYFRT 804

Query: 257  RSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
              EM+  F  L   +A E  +    + S  ++  +PI P     +C  + +  + +LR+ 
Sbjct: 805  TEEMLHEFEYLGSDKAREVVITNPNKISDQIENISPIHP----DKCPPVIENSDRDLRDI 860

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
                                     RLD ELN I    ++  ++I    +  +  +   V
Sbjct: 861  CYKKAHDIYGPNL------PDIVTTRLDKELNSIIGNGYAVMYIIAQKLVWDSLDHGYLV 914

Query: 375  GPGRGSGAGSVTAYALTITDIDPLR----------------------------------- 399
            G  RGS   S  A    IT+++PL                                    
Sbjct: 915  G-SRGSVGSSFAATMSGITEVNPLPAHYICPECYYVDFDSPEVKKYARMGMSGCDMPDAV 973

Query: 400  ------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                          + FE FL       PD D++F  + + +   YV+  +G  +  +  
Sbjct: 974  CPKCGAKLNKEGHDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHAYVEVIFGKGKAYRAG 1033

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G+L  K A   V + L                                  E R     
Sbjct: 1034 TIGTLAEKTAYGYVLKYL----------------------------------EEREISKR 1059

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKW 562
               +  +++   G+ R    H  GI++   D+ +     + R   DVRS +  T +    
Sbjct: 1060 KCEIERLAKGCTGVKRTTGQHPGGIIVVPHDKEIYDFTAVQRPANDVRSPIITTHYEYHS 1119

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            I+   L+K D LG    +++++  D             IP DD     L      LGI  
Sbjct: 1120 IDS-NLLKLDILGHDDPSMIRRLEDLTGVNA-----QNIPLDDKSVMSLFHGTEVLGITP 1173

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPM 681
             +  G +    G+     + +I ++    P    ++V  +   +G +  + +   LI+  
Sbjct: 1174 EQIGGTKLGSLGIPEFGTDFVIQMLLDTNPQSFSDLVRISGLSHGTDVWLGNAQKLIEEG 1233

Query: 682  LKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
                   I  ++ +M            S +  + +R+  G K ++E              
Sbjct: 1234 DATISTSICTRDDIMVYLINQGLDEALSFTIMESVRKGKGLKPEQEEA------------ 1281

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE--- 795
              + +      +    K   Y F K+HA AY +++++ AW K  +P+ + AA  ++    
Sbjct: 1282 --MREKDVPEWYIWSCKQIKYMFPKAHAVAYVMMAWRIAWFKVFHPLAYYAAYFSIRAKA 1339

Query: 796  ------MDNVEKI-------------------------KKFCQDARQFNIQIMPPSV-NT 823
                      EK+                          K   +      + MP  +   
Sbjct: 1340 FSYEDMCMGKEKLNNRMKEIQNTPKFEVKNADLDLLREMKIADEMYARGFEFMPLDIYRA 1399

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
               DF++ D +I    +AI G+G   A+   EAS  +PF S+E+F  R  + K     ++
Sbjct: 1400 KAKDFQIIDGKIMPPYSAIDGMGEKAAKEAAEASKGEPFTSMENFRDRTKAPKSVVDKMK 1459

Query: 884  SLVFAGALDC 893
             L   G L+ 
Sbjct: 1460 ELGLMGDLEE 1469



 Score = 65.8 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           V L +H+  S  +  + +N+I+ +      PA+AITD   L  A   ++ A  
Sbjct: 361 VELHLHTVMSDNDSVVQINDIVKRAYEWGHPAVAITDHGVL-QAFPIARHAYE 412


>gi|312865553|ref|ZP_07725780.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            downei F0415]
 gi|311099071|gb|EFQ57288.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            downei F0415]
          Length = 1468

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 165/957 (17%), Positives = 333/957 (34%), Gaps = 180/957 (18%)

Query: 44   IAITDTNNLFSALEFSQKACAAG------IQPIIGCQLDIDMQD-NLKMTNQGKTPFPTV 96
            +A+ D +++      +  A A G      I+     +   D+ D N K+ ++       V
Sbjct: 567  VAL-DHHHMA-----NYDAEATGRLLFIFIKEARENRGITDLADLNTKLVSEDSYKKARV 620

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
                + V    G + + +LVS   +    +   RI  + L +   EGL++ +  S G + 
Sbjct: 621  KHATIYVQNQTGLKNIFKLVSLSNVK-YFEGVARIPRTVLDQY-REGLLLGSACSEGEVF 678

Query: 157  RAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHEL 209
             A   +    A +    +         ++   +   L ++          ++++      
Sbjct: 679  DAVLSHGLDKALEVAKYYDFIEVMPPAIYRPLIARELIKNEEGIEQVIKDLIEVGRRLNK 738

Query: 210  PLVATNNSLFLSEEDYEAHDVLMA-------VAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            P++AT +  +L  ED    ++++        +       +  +P   PD + +  +EM+ 
Sbjct: 739  PVLATGDVHYLEPEDQLYREIIVRSLGPGALINRPIGRGEGAQPAPLPDAHFRTTNEMLD 798

Query: 263  IFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
             F+ L E  A E  V   ++ +   +    +         D  ++    +   +A     
Sbjct: 799  DFAFLGEDLAYEIVVTNTQKFAEQFEEVEVVKTDLYTPYIDKAEETVAEKTYARAFE--- 855

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                   I          +R++ EL  I    F+  +L     +  + K    VG  RGS
Sbjct: 856  -------IYGNPLPDIIDRRIEKELTSILGNGFAVIYLASQMLVDRSNKRGYLVG-SRGS 907

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S  A  + IT+++P+                                          
Sbjct: 908  VGSSFVATMIGITEVNPMPPHYVCPECQYSEFIADGSVGSGFDLPDKDCPNCGHKLTKDG 967

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL  D   +PD D++F  D +      V++ +G E   +  T G++  K A  
Sbjct: 968  HDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEEYAFRAGTVGTVAEKTAYG 1027

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V +  +  Y++  R                              +  VDRL   +    
Sbjct: 1028 FV-KGYERDYNKFYR------------------------------EAEVDRL---AMGSA 1053

Query: 520  GLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H  GIV+      +    P+         +   T FN   I++  ++K D L
Sbjct: 1054 GVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDTSAEWQTTHFNFHDIDE-NVLKLDIL 1112

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            G    T+++K  D        +D S IP DD +   L +    LG+ + E  G    + G
Sbjct: 1113 GHDDPTMIRKLQDLSG-----IDPSQIPADDPDVMKLFSGTDVLGVTE-EQIGTPTGMLG 1166

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQE 693
            +       +  +V+   P     ++  +   +G +  + +   LI   +   + VI  ++
Sbjct: 1167 IPEFGTNFVRGMVNETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRD 1226

Query: 694  QVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
             +M     A L    +    + +R+ M  KI EE   ++  +I     N +      +  
Sbjct: 1227 DIMVYLMHAGLEPKMAFIIMERVRKGMWLKIPEE---ERNGYIQAMRDNNVPDWYIESCG 1283

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD------------- 797
            ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++                
Sbjct: 1284 KI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIRAKAFELKTMSAGLDA 1338

Query: 798  ----------------------NVEKIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNR 834
                                  ++    +   +  +   +       N+   +FK+  + 
Sbjct: 1339 VKARMEDIASKRKNNEASNVEIDLYTTLEIVNEMLERGYKFGQLDLYNSEASEFKIEGDT 1398

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +     A+ G+G   A+ I+ + AD  F S  +   R     ++  ++E +   G L
Sbjct: 1399 LIPPFVAMDGLGENVAKQIVASRADGEFLSKTELRKR---GGVSATLVEKMDDMGIL 1452



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 34/67 (50%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++  ++DK A+   PAIAITD  N+ S      +A  
Sbjct: 337 MPEGQKRVEFHAHTNMSTMDALPTVEELIDKAASWGHPAIAITDHANVQSFPHGYHRAKK 396

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 397 AGIKAIF 403


>gi|167746785|ref|ZP_02418912.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662]
 gi|167653745|gb|EDR97874.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662]
          Length = 1475

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 169/910 (18%), Positives = 308/910 (33%), Gaps = 177/910 (19%)

Query: 88   QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML 147
            +           ++LV    G   L  LVS  ++     +  R+  S + +   EGLI+ 
Sbjct: 630  EDFIKKGRTYHGIILVKNNTGRVNLNRLVSESHVR-YFNRRPRMPKSLINKY-REGLIIG 687

Query: 148  TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHR---GYDRYRE- 197
            +   +G +  A     S+    +++ F           ++  +   RH     ++  R  
Sbjct: 688  SACEAGELYSAIVDQRSEEEIAKIVEFYDYLEIQPEGNNQFMIESARHENVSSFEDIRNF 747

Query: 198  -SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKN 256
              ++V+L  T   P+ AT +  FL  +D     +LMA                P  Y + 
Sbjct: 748  NRKIVELGETFRKPVAATCDVHFLDPDDSIYRAILMAGKGFKDADS------QPPLYFRT 801

Query: 257  RSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
              EM+  F  L   +A E  +    + S  ++  +PI P     +C  + +  + +LR+ 
Sbjct: 802  TEEMLHEFEYLGSDKAREVVITNPNKISDQIENISPIHP----DKCPPVIENSDRDLRDI 857

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
                                     RLD ELN I    ++  ++I    +  +  +   V
Sbjct: 858  CYKKAHDIYGPNL------PDIVTTRLDKELNSIIGNGYAVMYIIAQKLVWDSLDHGYLV 911

Query: 375  GPGRGSGAGSVTAYALTITDIDPLR----------------------------------- 399
            G  RGS   S  A    IT+++PL                                    
Sbjct: 912  G-SRGSVGSSFAATMSGITEVNPLPAHYICPECYYVDFDSPEVKKYARMGMSGCDMPDAV 970

Query: 400  ------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                          + FE FL       PD D++F  + + +   YV+  +G  +  +  
Sbjct: 971  CPKCGAKLNKEGHDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHAYVEVIFGKGKAYRAG 1030

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G+L  K A   V + L                                  E R     
Sbjct: 1031 TIGTLAEKTAYGYVLKYL----------------------------------EEREISKR 1056

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKW 562
               +  +++   G+ R    H  GI++   D+ +     + R   DVRS +  T +    
Sbjct: 1057 KCEIERLAKGCTGVKRTTGQHPGGIIVVPHDKEIYDFTAVQRPANDVRSPIITTHYEYHS 1116

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            I+   L+K D LG    +++++  D             IP DD     L      LGI  
Sbjct: 1117 IDS-NLLKLDILGHDDPSMIRRLEDLTGVNA-----QNIPLDDKSVMSLFHGTEVLGITP 1170

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPM 681
             +  G +    G+     + +I ++    P    ++V  +   +G +  + +   LI+  
Sbjct: 1171 EQIGGTKLGSLGIPEFGTDFVIQMLLDTNPQSFSDLVRISGLSHGTDVWLGNAQKLIEEG 1230

Query: 682  LKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
                   I  ++ +M            S +  + +R+  G K ++E              
Sbjct: 1231 DATISTSICTRDDIMVYLINQGLDEALSFTIMESVRKGKGLKPEQEEA------------ 1278

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE--- 795
              + +      +    K   Y F K+HA AY +++++ AW K  +P+ + AA  ++    
Sbjct: 1279 --MREKDVPEWYIWSCKQIKYMFPKAHAVAYVMMAWRIAWFKVFHPLAYYAAYFSIRAKA 1336

Query: 796  ------MDNVEKI-------------------------KKFCQDARQFNIQIMPPSV-NT 823
                      EK+                          K   +      + MP  +   
Sbjct: 1337 FSYEDMCMGKEKLNNRMKEIQNTPKFEVKNADLDLLREMKIADEMYARGFEFMPLDIYRA 1396

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
               DF++ D +I    +AI G+G   A+   EAS  +PF S+E+F  R  + K     ++
Sbjct: 1397 KAKDFQIIDGKIMPPYSAIDGMGEKAAKEAAEASKGEPFTSMENFRDRTKTPKSVVDKMK 1456

Query: 884  SLVFAGALDC 893
             L   G L+ 
Sbjct: 1457 ELGLMGDLEE 1466



 Score = 65.8 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           V L +H+  S  +  + +N+I+ +      PA+AITD   L  A   ++ A  
Sbjct: 358 VELHLHTVMSDNDSVVQINDIVKRAYEWGHPAVAITDHGVL-QAFPIARHAYE 409


>gi|218462029|ref|ZP_03502120.1| DNA polymerase III protein, alpha subunit [Rhizobium etli Kim 5]
          Length = 523

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 152/528 (28%), Positives = 249/528 (47%), Gaps = 28/528 (5%)

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTV 275
            L+   E     DV++A+     +SQ         + YLK+  EM+ IF D P+A+ENT 
Sbjct: 11  PLYHHPERRPLSDVVIAIREHVQISQAGFLLAPNAERYLKDSREMMRIFGDYPDAVENTQ 70

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
               + +F L+      P       +D  +  +  L     AG   R   G   K     
Sbjct: 71  VFFGKLTFSLKELQHNYPP-----ENDPGETPQQTLERLTRAGAARRYPGGVPPK----- 120

Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
              Q++D+EL +I    ++ YFL V   IQ A+ +   +  GRGS A SV  Y L IT++
Sbjct: 121 -VAQQIDYELKLIGDKNYASYFLTVHRIIQHARYDLKVLCQGRGSAANSVICYCLEITEV 179

Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
           DP + +LLF+RF++ DR   PD D+DF  DRR+EVI+++  +YG E         + + +
Sbjct: 180 DPQKSTLLFDRFISMDRDEPPDIDVDFEHDRREEVIQFIYGRYGIEHAGLTAGVTTYRTR 239

Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
           +A R+V +A  +       +  L+       +S +    D++     + DP    +L+ +
Sbjct: 240 SAGREVAKAFGLSEDVQSAISSLVWGWSEDNLSDR----DAKAAGLDVKDPLTQNVLQYA 295

Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            +L G  RH + H  G VI    L ++VP+ +    D  + +++   ++   ++K D L 
Sbjct: 296 SELLGFPRHLTQHVGGFVITRDRLDEVVPIMKTAMPDRYMIEWDKDDLDNVKILKVDVLA 355

Query: 576 LKTLTLLQKSLDFLAQRG----VKVDLSLIPFDD--HETYHLLTTKGTLGIFQLESSGMR 629
           L  LT L+K+   L           DL      D     Y ++    TLG+FQ+ES    
Sbjct: 356 LGMLTCLRKAFSLLELHYDVKKTLADLGNREHGDEGKPVYEMMGRADTLGVFQIESRAQM 415

Query: 630 QALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKE---KIVSIHPLIDPMLKE 684
             L  ++P    D++  V++ RPGPI  D +  Y  R+  +     +      ++ +L+ 
Sbjct: 416 SMLPRLKPKIFYDLVIEVAIVRPGPIQGDMVHPYLKRREQRARNIPVKYPSKELEAVLER 475

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKER 731
           T GV ++QEQ MQIA   +G+  +EAD LRRAM   K    +   ++R
Sbjct: 476 TLGVPLFQEQAMQIAITAAGFRPAEADKLRRAMATFKRTGTIGDFEKR 523


>gi|154250388|ref|YP_001411213.1| DNA polymerase III PolC [Fervidobacterium nodosum Rt17-B1]
 gi|154154324|gb|ABS61556.1| DNA polymerase III, alpha subunit [Fervidobacterium nodosum Rt17-B1]
          Length = 1390

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 160/892 (17%), Positives = 323/892 (36%), Gaps = 161/892 (18%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + +LV    G + L +L+S+ +         ++  S L E   EGL++ TG ++  I  
Sbjct: 572  HVTVLVRNKTGLKNLYKLISKAHTET-FFVVPQVLKSEL-EKHREGLLIGTGCANSEIFE 629

Query: 158  AFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATN 215
                  +    + L  +   ++       + +  R   +     + Q+     +P+V  +
Sbjct: 630  LALQRDTGALTEALKFYDYIEIMPLDTINSEEFTREEAKEAYKLLYQVGKELNMPVVMVS 689

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM----VSIFSDLPEAL 271
            N+ F+  ED +A  VL+A   +    + +       +YL+   EM    + IF D   A 
Sbjct: 690  NAHFIDPEDIKARKVLLAPQSNIEDEEAN-------YYLRTTQEMIDAALEIFEDEQIAK 742

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
            E  V+  ++ + ++    P+  +    + +      E +LR                   
Sbjct: 743  EVVVDNPKKIANMIDTIQPLEKKLHPPKIEGA----EEKLRTMTYEKAYQLYGN------ 792

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
               +   +R++ ELN I    ++  ++I    ++ A ++   VG  RGS   S+ A+ + 
Sbjct: 793  PLPEIVEKRIEKELNSIIGHGYAVLYMIAHLIVKKAGEDGYVVG-SRGSVGSSLVAHLVG 851

Query: 392  ITDIDPLR---------------------------------------FSLLFERFLNPDR 412
            IT+++PL                                          + FE F+  + 
Sbjct: 852  ITEVNPLPAHYRCPDCKYFELHEEFGSGYDLPDKLCPKCGAKLEKVGQDIPFEVFMGFEG 911

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
              +PD D++F  + ++   ++++  +G  +V +  T  ++  ++A+  V           
Sbjct: 912  DKVPDIDLNFSGEYQERAHKFIEELFGKSKVFRAGTISTIADRSAIGYV----------- 960

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
                             +A  +D         +P+      ++  + G+ R    H  G+
Sbjct: 961  -----------------KAYMEDKNGNIVNPLNPAEQE--RLTMYVTGVKRTTGQHPGGL 1001

Query: 533  VIGDRP--LSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            +I      +    P      D +S +  T F  ++I    LIK D LG    T+++   +
Sbjct: 1002 MIVPNEYEIYDFTPFQHPANDKKSGVYTTHFAYEFIHD-DLIKLDALGHDDPTMIRLLYE 1060

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            +       +D   IP DD +T  + ++   LG+   E  G      G+     + ++ ++
Sbjct: 1061 Y-----SGIDPMTIPMDDKKTISIFSSTKALGVDPEEL-GTDVGTIGIPEFGTDFVMGML 1114

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS--- 703
               RP     +V  +   +G +  + +   LI+  +     VI  ++ +M          
Sbjct: 1115 RETRPKTFAELVRISGLSHGTDVWLGNAQTLINKKIATLSDVISCRDDIMIYLIHKGVPH 1174

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
              +    + +R+  G K +E               N + +    + F    +   Y F K
Sbjct: 1175 SNAFKIMENVRKGKGLKEEEI--------------NIMKEHNVPDWFIESCQKIKYLFPK 1220

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD-------------------------- 797
            +HA AY  ++++ A+ K HYP+ F AA  + + D                          
Sbjct: 1221 AHAVAYVSMAFRIAYFKVHYPLAFYAAYFSTKGDEFDAELILKGKEAIKKRLVELAASMK 1280

Query: 798  ------NVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTA 850
                  N EK+ +   +          P +       F +    +      I G+G   A
Sbjct: 1281 KDVKEKNEEKVLQAALEMLLRGYGFKKPDLKRSDAKRFIIDGKDLLIPFNKIHGIGENVA 1340

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
              I+E  A+KP+ S+ED  +R    K    VL+ +   G LD    +   +L
Sbjct: 1341 NSIVEKRAEKPYTSIEDLMNRARVTKAQVEVLKRI---GVLDGLPETDQAML 1389



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 43/94 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S L+  + ++  +         AIAITD  N+ +  EF   A +AG++PI 
Sbjct: 297 VELHAHTKMSDLDSVMDISEYVSTAKKWGWEAIAITDHGNVQAIPEFFDIAKSAGLKPIF 356

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G +L +       M N+ +        +VL + T
Sbjct: 357 GSELYLANDPKRIMMNEIEGNVDDYTYVVLDLET 390


>gi|312868001|ref|ZP_07728205.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            parasanguinis F0405]
 gi|311096405|gb|EFQ54645.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            parasanguinis F0405]
          Length = 1464

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 311/916 (33%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + ++       V    L V    G + + +LVS        +   RI  + L +   
Sbjct: 602  NIDLIDENSYKKARVKHATLYVKNQTGLKNMFKLVSLSGTK-YFEGVPRIPKTVL-DAHR 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 660  EGLILGSACSEGEVFDAVMSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 719

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  +L  ED    +++         +  +    +  +P 
Sbjct: 720  TIIKSLIEVGDRLGKPVLATGNVHYLEPEDEIYREIIVRSLGQGAMINRTIGHGEDAQPA 779

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 780  PLPKAHFRTTNEMLDEFAFLGEDLARKIVIENTNALAETFEPVEVVKGDLYTPFIDKAEE 839

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             +   E    R   + G                     R++ EL  I    F+  +L   
Sbjct: 840  TVA--ELTYKRAFEIYG------------NPLPDIVDLRIEKELTSILGNGFAVIYLASQ 885

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +  + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 886  MLVHRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCSQCQYSEFITDGSYGSG 944

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 945  FDMPDKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1004

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  + +                             
Sbjct: 1005 EYAFRAGTVGTVAAKTAYGFV-KGYERDFGK----------------------------- 1034

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +    G+ R    H  GIV+      +    P+         +   
Sbjct: 1035 -YYRDAEVERL---ALGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1090

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1091 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNDIPMDDPGVMALFSGT 1144

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1145 EVLGVT-AEQIGTPTGMLGIPEFGTNFVRGMVEETHPTTFAELLQLSGLSHGTDVWLGNA 1203

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M            + +  + +R+ M  KI EE   ++  
Sbjct: 1204 QDLIKAGIADLSTVIGCRDDIMVYLMHAGLKPKMAFTIMERVRKGMWLKISEE---ERNG 1260

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I    +N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1261 YIQAMKENNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPLYYYCAY 1315

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1316 FSIRAKAFDIKTMGAGLEAVKSRMKEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1375

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ I+ A  +  F S  +   R    
Sbjct: 1376 GKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQIVRAREEGEFLSKTELRKR---G 1432

Query: 876  KLNRRVLESLVFAGAL 891
             ++  ++E +   G L
Sbjct: 1433 GVSSTLVEKMDEMGIL 1448



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  ++ K A     A+AITD  N+ S     + A  
Sbjct: 333 MPEGERRVEFHAHTNMSTMDALPEVEELIAKAAEWGHKAVAITDHGNVQSFPHGFKAAKK 392

Query: 65  AGIQPIIGC 73
           AGIQ I G 
Sbjct: 393 AGIQLIYGM 401


>gi|322374172|ref|ZP_08048705.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. C150]
 gi|321276877|gb|EFX53949.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. C150]
          Length = 1464

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 156/916 (17%), Positives = 317/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++ ++       V    L V    G + + +LVS   +    +   RI  + L E   
Sbjct: 602  NTELVSEDSYKKSRVKHATLYVQNQTGLKNIFKLVSLSNV-SYFEGVARIPRTVLDEY-R 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NLQRHRGYDR 194
            EG+I+ +  + G +      +  + A +    +   ++    +Y      +L +      
Sbjct: 660  EGIIVGSACADGEVFDTLLSHGIEKAVEVAKYYDFIEVMPPAIYAPLIAKDLIKDEATVE 719

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++A   + P++AT N  +++ ED    +++         +       +  +P 
Sbjct: 720  QLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIVRALGQGAMINRPIGKGENAKPA 779

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALE------NTVEIARRCSFILQVHAPILPRFIEKECD 301
              P+ + +  +EM+  F+ L + L       NT  +A +   +  V   +   FI    D
Sbjct: 780  PLPEAHFRTTNEMLDDFAFLGKELAYEVVVTNTQAMADQIEEVEVVKKDLYTPFI----D 835

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              +++       KA            +           R++ EL+ I    F+  +L   
Sbjct: 836  RAEEQVAEMTYAKAFE----------LYGNPLPDIIDLRIEKELSSILGNGFAVIYLASQ 885

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------------ 403
              +  + +    VG  RGS   S  A  + IT+++P+    L                  
Sbjct: 886  MLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYLCPKCQHSEFITDGSYGSG 944

Query: 404  -----------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                   FE FL  D   +PD D++F  D +      V++ +G 
Sbjct: 945  FDLPDKKCSECGSEYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGE 1004

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            +   +  T G++  + A   V +  +  Y++  R                          
Sbjct: 1005 QYAFRAGTVGTVADRTAYGFV-KGYERDYNKFYR-------------------------- 1037

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  VDRL   +    G+ R    H  GIV+      +    P+             
Sbjct: 1038 ----DAEVDRL---AMGAAGVKRSTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAAWQT 1090

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D   I  DD +   L +  
Sbjct: 1091 THFNFHDIDE-NVLKLDILGHDDPTMIRKLQDL-----SGIDPKDIRADDPDVMKLFSGT 1144

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1145 DILGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1203

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   +   + VI  ++ +M     A L    + +  + +R+ M  KI EE   ++  
Sbjct: 1204 QDLIKEGIATLKTVIGCRDDIMVYLMHAGLDPKMAFTIMERVRKGMWLKISEE---ERNG 1260

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I    +N +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1261 YIQAMRENNVPDWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1315

Query: 792  MTLEMDNV---------EKIK--------------------------KFCQDARQFNIQI 816
             ++              + +K                          +   +  +     
Sbjct: 1316 FSIRAKAFELKTMSAGLDAVKARMEDIKEKRQRNEATNVEIDLFTTLEIVNEMLERGFTF 1375

Query: 817  MPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                   +   +F +  + +     A++G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1376 GQLDLYKSQATEFLIEGDTLIPPFIALEGLGENVAKQVVAAREEGEFLSKTELRKR---G 1432

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E L   G L
Sbjct: 1433 GLSSTLVEKLDEMGIL 1448



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++  ++D  A+   PA+AITD  N+ S      +A  
Sbjct: 333 MPEGQKRVEFHAHTNMSTMDAMPTVEELIDTAASWGHPAVAITDHANVQSFPHGYHRAKK 392

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 393 AGIKAIF 399


>gi|329919876|ref|ZP_08276814.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners SPIN 1401G]
 gi|328936966|gb|EGG33396.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners SPIN 1401G]
          Length = 1424

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 165/913 (18%), Positives = 318/913 (34%), Gaps = 202/913 (22%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   
Sbjct: 594  RAKPNHMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQ 651

Query: 153  GPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-----VVQLAY 205
            G +  +          +  R+  F ++     Y  L   +     +E Q     + +L  
Sbjct: 652  GDVFISMMQKGYDATREKARIYDFLEVQPPAAYQQLLDDKLIKDKKELQEIITNIYKLGK 711

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
               +P+VAT+++ ++ ++D     +L++       + + +    PD +     EM+  FS
Sbjct: 712  ELGIPVVATSDAHYIDKKDAIYRKILLSAQ----KANRGKNYELPDLHFYTTQEMLDAFS 767

Query: 266  DL------PEALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAV 316
             L         ++NT  IA +   +  + + + P  IE   KE + +  ++ +EL     
Sbjct: 768  FLDPKIAEEIVIKNTNIIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHELYG--- 824

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                              +  + RL++EL  I    ++  +LI    +  + K+   VG 
Sbjct: 825  --------------NPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG- 869

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFSLLFER--------------------- 406
             RGS   S+ A    IT+++PL         ++S  FE+                     
Sbjct: 870  SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCSADL 929

Query: 407  -----------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                       FL      +PD D++F  D +     Y++  +G +   +  T G++  K
Sbjct: 930  AKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADK 989

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V                            +   D++  +   L +  +DRL   S
Sbjct: 990  IAYGYV----------------------------KHYEDENELK---LRNAELDRL---S 1015

Query: 516  QKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIK 570
            Q   G+ R    H AGIV+   D  +    P+             T F+   I    ++K
Sbjct: 1016 QGASGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILK 1074

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKG 616
            FD LG    T+++   D        VD   IP  D     L +                G
Sbjct: 1075 FDILGHDDPTMIRMLQDL-----SGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTG 1129

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            TLG+ +  +  +R  LE  +P    +++ +  L     +      +    G  K+ ++  
Sbjct: 1130 TLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINKGICKLKNVIG 1189

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
              D ++ +     +  E           +S  E+    + +  +    + K K       
Sbjct: 1190 CRDNIMTDLIHWDVPPEVA---------FSTMESVRHGKGISDENMAILSKNKN------ 1234

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
                       + +        Y F K+HA AY +++ + AW K +YPV +  + +++  
Sbjct: 1235 ---------IPDWYIQSCLKIKYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRA 1285

Query: 797  DNVEKIK---------------------------------KFCQDARQFNIQIMPPSVNT 823
            D  + +                                  +   +  +  I I    +  
Sbjct: 1286 DLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEK 1345

Query: 824  P-CVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
               ++FK+  ++ I      + G+G   A+ I+ A  ++PF S ED   R    K+++ +
Sbjct: 1346 SDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTI 1402

Query: 882  LESLVFAGALDCF 894
            +E     G LD  
Sbjct: 1403 MEYFENNGVLDGL 1415



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 321 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 380

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++     L + N     +     ++  V T
Sbjct: 381 GYEANMINDQALLVLNPANMDYRGQEYVIFDVET 414


>gi|222099186|ref|YP_002533754.1| DNA polymerase III subunit alpha [Thermotoga neapolitana DSM 4359]
 gi|221571576|gb|ACM22388.1| DNA polymerase III subunit alpha [Thermotoga neapolitana DSM 4359]
          Length = 831

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 207/700 (29%), Positives = 334/700 (47%), Gaps = 101/700 (14%)

Query: 269 EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
           EA E    +  R  F L       P   E   + ++ E  +    +          +   
Sbjct: 108 EAEEKAASLFMRKIFGLDEDIRGFPEKCEDVSEIVKAEPYDLRVEQKFPDPPENWYRNLR 167

Query: 329 AKGYH-AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
            +     + Y +RL+ EL  I +  FS Y  +V + ++ A+K  I VGPGRGS  GS+  
Sbjct: 168 ERASRMGEKYLERLERELETIEKKGFSSYIYLVEEIVKTARKLGIKVGPGRGSAVGSLVV 227

Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
           +   IT+IDPL+  LLFERF+N +R+  PD D+D    RR E+++ +  ++    V Q+ 
Sbjct: 228 FLCGITEIDPLKHDLLFERFINEERIEPPDIDVDVEDRRRKELLKELSKRF---YVYQVS 284

Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
           TFG+L  ++                  L  LI +                          
Sbjct: 285 TFGNLAERS------------------LKNLIGSTS------------------------ 302

Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
             R+ EI   L GL  H S HAAG+VI +RPL    P+   +  ++PVT ++M  +++ G
Sbjct: 303 -RRMYEI---LYGLPHHPSVHAAGVVISERPL----PIPFRLEEEIPVTDYDMYDLDRIG 354

Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
           ++K D LGLKTL+ ++             +     + D +TYH+++   TLG+FQLE   
Sbjct: 355 VVKIDILGLKTLSFVKD-----------FNRKTFDYSDEKTYHIISKGKTLGVFQLEGLQ 403

Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKET 685
            R+    + P  +E++  L++L RPGP+ + +  +Y + K+  E        +  +  ET
Sbjct: 404 ARRLCRKISPGNLEELSVLLALNRPGPLKSGIDSMYVSSKSVPE-------SLKKLFPET 456

Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
           +GV+IYQEQ+M +A  L+G S +EADVLRRA+ KK KE+M+   ER   G  + G+    
Sbjct: 457 RGVVIYQEQIMNLAM-LAGLSGAEADVLRRAIAKKEKEKMEPLLERLKEGLVEKGV--ED 513

Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
              I ++L  F+ Y FNKSH+ AYA +S+QTA++K H+  EF        + + EK+   
Sbjct: 514 VDLILKILLNFSSYAFNKSHSVAYAHLSFQTAYLKVHFFEEFFKRYFEYNIGDSEKVFLA 573

Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
            Q+ R    ++ PP+VN         +N++Y  L A+KGVG +    I     ++P DS+
Sbjct: 574 VQELRSEGYEVFPPNVNVSGKYPVFRENKVYLPLTAVKGVGESMVEEI---EKNRPIDSV 630

Query: 866 EDFCSRV-DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
                R+ + + + R VLE+++ AGA D    SR Q  + L+          +       
Sbjct: 631 ----RRLQEVRGIPRNVLENMISAGAFDELYESRAQAFEELNRKVDSDILKIRE------ 680

Query: 925 NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +F            +E+ S    +   E E++ LGF  +
Sbjct: 681 -LFGE---------KIEQKSGVKPADLCELEEKSLGFPLT 710



 Score = 40.0 bits (92), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 18 SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75
          S YS     +    ++  +      +  + D  N  +A++F+      G+ P+ G   
Sbjct: 7  SPYSFDGSVVRFEKLVSVLKKRGLKSALLADR-NFHAAVKFNTIMREHGLIPVHGLWW 63


>gi|227529104|ref|ZP_03959153.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540]
 gi|227350948|gb|EEJ41239.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540]
          Length = 1442

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 161/929 (17%), Positives = 305/929 (32%), Gaps = 174/929 (18%)

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                  GI+ I      +   D  +              + +L  T  G + L +LVS  
Sbjct: 587  DAEKRYGIKLISDLNKHMTDNDAYR--------HARPFHVTILAQTQAGLKNLYKLVSLS 638

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF----- 174
             +     +  RI  S L +   +GL++ T  SSG +  A        AE++   +     
Sbjct: 639  NVK-YFARVPRIPRSVLTKF-RQGLLLGTACSSGEVFTAMMEKGFAEAERKAKYYDFIEV 696

Query: 175  --KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
              K  +   L   +     +       +V+L    + P+VAT +  +L   D     +L+
Sbjct: 697  QPKPNYQPLLEQKVIADDAHLEDILKNMVKLGENLKKPVVATGDVHYLDAHDAIYRKILI 756

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHA- 289
                      + R    PD + +   EM++ FS L   +A +  V    + + ++     
Sbjct: 757  NSQGGANPLNRTRR---PDVHFRTTDEMLNEFSFLGADKAHQIVVTNTHQVADMIDDGIC 813

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
            P+  +         ++E ++   + A       L           +  + R+D ELN I 
Sbjct: 814  PVKDKLYTPHMKGAEQEIQDRTWDTAKKWYGDPL----------PKIVQDRVDLELNSIV 863

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------- 399
            +  FS  +LI    +  + K+   VG  RGS   SV A    IT+++PL           
Sbjct: 864  KNGFSVIYLIAQRLVAKSNKDGYLVG-SRGSVGSSVVATLSGITEVNPLPPHYRCPKCHY 922

Query: 400  -------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                                             + F+ FL      +PD D++F  D + 
Sbjct: 923  SHFYTKGEYSSGFDLPEKKCPKCGTLLVKDGHDIPFQTFLGFKGNKVPDIDLNFSGDYQP 982

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
                Y++  +G + V +  T G++  K A   V +A +                      
Sbjct: 983  IAHNYMKVLFGEKNVFRAGTIGTVADKTAYGYV-KAYERD-------------------- 1021

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMY 546
                  D +FR A            +S    G+ R    H AGI+I      +    P+ 
Sbjct: 1022 -----TDKQFRGAEED--------RLSHGATGVKRTTGQHPAGIIIVPDDMEIYDFTPVQ 1068

Query: 547  RDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
                        T F+   I    ++K D LG    T+++   D        VD   IP 
Sbjct: 1069 YPADDQEAAWETTHFDFHSIHD-NILKMDILGHDDPTMIRALQDL-----SGVDPQTIPM 1122

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D     L ++   LG+ + +    +    G+       +  ++    P     ++  + 
Sbjct: 1123 NDPGVMSLFSSPEALGVSEEQIQS-KTGTLGLPEFGTRFVRGMLEDTHPKNYSQLLQISG 1181

Query: 664  RKNGKEKI-VSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGK 719
              +G      +   LI   +     VI  ++ +M       L S  S    + +R     
Sbjct: 1182 LSHGTGVWLDNAQELIKQGVATIANVIGCRDNIMTDLIHYGLDSETSFQVMESVR----- 1236

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
                       R I    +  + +      +        Y F ++HAAAY +++ + A+ 
Sbjct: 1237 ---------HGRGIPDDWQKKMREANVPQWYMDSCLKIKYMFPRAHAAAYVLMALRIAYF 1287

Query: 780  KTHYPVEFLAASMTLEMDNVEKIK---------------------------------KFC 806
            K ++P+ +  A  ++  D+ + +                                  +  
Sbjct: 1288 KVYFPLVYYCAFFSVRADDFDVVAMSHGKDAVKTRMKEINSQGNDASAKDKSLLTILELA 1347

Query: 807  QDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +  +   +     +      ++ +  N +     A+ G+G   A+ I+ A  +K F S 
Sbjct: 1348 NEMLERGFKFKMVDLERSDASNWLIDGNTLIAPFRAVPGLGLNVAKQIVAAREEKKFLSK 1407

Query: 866  EDFCSRVDSKKLNRRVL-ESLVFAGALDC 893
            +D   R    +     L ++ V  G  D 
Sbjct: 1408 QDLAERGKVSQTIIDFLTQNHVLDGLPDE 1436



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 44/94 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  HS  S ++   S+  + ++  +  QPAIAITD  ++ +  E  + A   GI+ + 
Sbjct: 339 IELHAHSEMSQMDATNSITELANRAHSWGQPAIAITDHADVQAFPEAFKAAKKTGIKMLY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++       + N+  TP      ++  V T
Sbjct: 399 GVEANVVDDGIPLVYNENDTPLDGQTYVIFDVET 432


>gi|228477790|ref|ZP_04062418.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            salivarius SK126]
 gi|228250482|gb|EEK09696.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            salivarius SK126]
          Length = 1464

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 156/916 (17%), Positives = 318/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++ ++       V    L V    G + + +LVS   +    +   RI  + L E   
Sbjct: 602  NTELVSEDSYKKSRVKHATLYVQNQTGLKNIFKLVSLSNV-SYFEGVARIPRTVLDEY-R 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NLQRHRGYDR 194
            EG+I+ +  + G +      +    A +    +   ++    +Y      +L +      
Sbjct: 660  EGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYDFIEVMPPAIYAPLIAKDLIKDEAAIE 719

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++A   + P++AT N  +++ ED    +++         +       +  +P 
Sbjct: 720  QLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIVRALGQGAMINRPIGKGENAKPA 779

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALE------NTVEIARRCSFILQVHAPILPRFIEKECD 301
              P+ + +  +EM+  F+ L + L       NT  +A +   +  V   +   FI++  +
Sbjct: 780  PLPEAHFRTTNEMLDDFAFLGKDLAYEIVVTNTQAMANQIEEVEVVKKDLYTPFIDRAEE 839

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             +   E    R   + G                     R++ EL+ I    F+  +L   
Sbjct: 840  QVA--EMTYARAFELYG------------NPLPDIIDLRIEKELSSILGNGFAVIYLASQ 885

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------------ 403
              +  + +    VG  RGS   S  A  + IT+++P+    L                  
Sbjct: 886  MLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYLCPNCQHSEFITDGSYGSG 944

Query: 404  -----------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                   FE FL  D   +PD D++F  D +      V++ +G 
Sbjct: 945  FDLPDKECSECGTEYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGE 1004

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            +   +  T G++  + A   V +  +  Y++  R                          
Sbjct: 1005 QYAFRAGTVGTVADRTAYGFV-KGYERDYNKFYR-------------------------- 1037

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  VDRL   +    G+ R+   H  GIV+      +    P+             
Sbjct: 1038 ----DAEVDRL---AMGAAGVKRNTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAAWQT 1090

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D   I  DD +   L +  
Sbjct: 1091 THFNFHDIDE-NVLKLDILGHDDPTMIRKLQDL-----SGIDPKDIRADDPDVMKLFSGT 1144

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1145 DILGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1203

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   +   + VI  ++ +M     A L    + +  + +R+ M  KI EE   ++  
Sbjct: 1204 QDLIKEGIATLKTVIGCRDDIMVYLMHAGLDPKMAFTIMERVRKGMWLKISEE---ERNG 1260

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I    +N +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1261 YIQAMRENNVPDWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1315

Query: 792  MTLEMDNV---------EKIK--------------------------KFCQDARQFNIQI 816
             ++              + +K                          +   +  +     
Sbjct: 1316 FSIRAKAFELKTMSAGLDAVKARMEDIKEKRQRNEATNVENDLFTTLEIVNEMLERGFTF 1375

Query: 817  MPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                   +   +F +  + +     A++G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1376 GQLDLYKSQATEFLIEGDTLIPPFIALEGLGENVAKQVVAAREEGEFLSKTELRKR---G 1432

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E L   G L
Sbjct: 1433 GLSSTLVEKLDEMGIL 1448



 Score = 78.9 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++ +++D  A+   PA+AITD  N+ S      +A  
Sbjct: 333 MPEGQKRVEFHAHTNMSTMDAMPTVEDLIDTAASWGHPAVAITDHANVQSFPHGYHRAKK 392

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 393 AGIKAIF 399


>gi|322390849|ref|ZP_08064359.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903]
 gi|321142519|gb|EFX37987.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903]
          Length = 1464

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 311/916 (33%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + ++       V    L V    G + + +LVS        +   RI  + L +   
Sbjct: 602  NIDLIDENSYKKARVKHATLYVKNQTGLKNMFKLVSLSGTK-YFEGVPRIPKTVL-DAHR 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 660  EGLILGSACSEGEVFDAVMSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 719

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  +L  ED    +++         +  +    +  +P 
Sbjct: 720  TIIKSLIEVGDRLGKPVLATGNVHYLEPEDEIYREIIVRSLGQGAMINRTIGHGEDAQPA 779

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 780  PLPKAHFRTTNEMLDEFAFLGEDLARKIVIENTNALAETFEPVEVVKGDLYTPFIDKAEE 839

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             +   E    R   + G                     R++ EL  I    F+  +L   
Sbjct: 840  TVA--ELTYKRAFEIYG------------NPLPDIVDLRIEKELTSILGNGFAVIYLASQ 885

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +  + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 886  MLVHRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCSQCQYSEFITDGSYGSG 944

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 945  FDMPDKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1004

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  + +                             
Sbjct: 1005 EYAFRAGTVGTVAAKTAYGFV-KGYERDFGK----------------------------- 1034

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +    G+ R    H  GIV+      +    P+         +   
Sbjct: 1035 -YYRDAEVERL---ALGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1090

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1091 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNDIPMDDPGVMALFSGT 1144

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1145 EVLGVT-AEQIGTPTGMLGIPEFGTNFVRGMVEETHPTTFAELLQLSGLSHGTDVWLGNA 1203

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M            + +  + +R+ M  KI EE   ++  
Sbjct: 1204 QDLIKAGIADLSTVIGCRDDIMVYLMHAGLKPKMAFTIMERVRKGMWLKISEE---ERNG 1260

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I    +N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1261 YIQAMKENNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPLYYYCAY 1315

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1316 FSIRAKAFDIKTMGAGLEAVKARMKEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1375

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ I+ A  +  F S  +   R    
Sbjct: 1376 GKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQIVRAREEGEFLSKTELRKR---G 1432

Query: 876  KLNRRVLESLVFAGAL 891
             ++  ++E +   G L
Sbjct: 1433 GVSSTLVEKMDEMGIL 1448



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  ++ K A     A+AITD  N+ S     + A  
Sbjct: 333 MPEGERRVEFHAHTNMSTMDALPEVEELIAKAAEWGHKAVAITDHGNVQSFPHGFKAAKK 392

Query: 65  AGIQPIIGC 73
           AGIQ I G 
Sbjct: 393 AGIQLIYGM 401


>gi|55822053|ref|YP_140494.1| DNA polymerase III PolC [Streptococcus thermophilus CNRZ1066]
 gi|81559957|sp|Q5M1Y0|DPO3_STRT1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|55738038|gb|AAV61679.1| DNA polymerase III alpha subunit [Streptococcus thermophilus
            CNRZ1066]
          Length = 1464

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/916 (16%), Positives = 317/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++ +        V    L V    G + + +LVS   +    +   RI    L E   
Sbjct: 602  NTELVSDDSYKKSRVKHATLYVQNQTGLKNIFKLVSLSNV-SYFEGVARIPRKVLDEY-R 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NLQRHRGYDR 194
            EG+I+ +  + G +      +    A +    +   ++    +Y      +L +  G   
Sbjct: 660  EGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYDFIEVMPPAIYAPLIAKDLIKDEGAIE 719

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++A   + P++AT N  +++ ED    +++         +       +  +P 
Sbjct: 720  QLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIVRALGQGAMINRPIGKEENAQPA 779

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P+ + +  +EM+  F+ L +       + NT  +A +   +  V   +   +I    D
Sbjct: 780  PLPEAHFRTTNEMLDEFAFLGKDLAYEIVVANTQAMANQIEEVEVVKKDLYTPYI----D 835

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              +++       KA            +           R++ EL+ I    F+  +L   
Sbjct: 836  RAEEQVAEMTYAKAFE----------LYGNPLPDIIDLRIEKELSSILGNGFAVIYLASQ 885

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------------ 403
              +  + +    VG  RGS   S  A  + IT+++P+    L                  
Sbjct: 886  MLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYLCPKCQHSEFITDGSYGSG 944

Query: 404  -----------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                   FE FL  D   +PD D++F  D +      V++ +G 
Sbjct: 945  FDLPDKECSECGTEYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGE 1004

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            +   +  T G++  + A   V +  +  Y++  R                          
Sbjct: 1005 QYAFRAGTVGTVADRTAYGFV-KGYERDYNKFYR-------------------------- 1037

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  VDRL   +  + G+ R+   H  GIV+      +    P+             
Sbjct: 1038 ----DAEVDRL---AMGVAGVKRNTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAAWQT 1090

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D   I  DD +   L +  
Sbjct: 1091 THFNFHDIDE-NVLKLDILGHDDPTMIRKLQDL-----SGIDPKDIRADDPDVMKLFSGT 1144

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1145 EVLGVTP-EQIGTSTGVLGIPEFGTNFVRGMVEETHPTTFAELLQLSGLSHGTDVWLGNA 1203

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   +   + VI  ++ +M     A L    + +  + +R+ M  KI EE   ++  
Sbjct: 1204 QDLIKEGIATLKTVIGCRDDIMVYLMHAGLDPKMAFTIMERVRKGMWLKISEE---ERNG 1260

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I    +N +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1261 YIQAMRENNVPDWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1315

Query: 792  MTLEMDNV---------EKIK--------------------------KFCQDARQFNIQI 816
             ++              + +K                          +   +  +     
Sbjct: 1316 FSIRAKAFELKTMSAGLDAVKARMEDIKEKRQRNEATNLENDLFTTLEIVNEMLERGFTF 1375

Query: 817  MPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                   +   +F +  + +     A++G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1376 GQLDLYKSQATEFLIEGDTLIPPFIALEGLGENVAKQLVAAREEGEFLSKTELRKR---G 1432

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E L   G L
Sbjct: 1433 GLSSTLVERLDEMGIL 1448



 Score = 78.1 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++  ++D  A    PA+AITD  N+ S      KA  
Sbjct: 333 MPEGQKRVEFHAHTNMSTMDAIPTVEELIDTAAFWGHPAVAITDHANVQSFPHGYHKAKK 392

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 393 AGIKAIF 399


>gi|257469515|ref|ZP_05633607.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185]
 gi|317063759|ref|ZP_07928244.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185]
 gi|313689435|gb|EFS26270.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185]
          Length = 1446

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 167/913 (18%), Positives = 337/913 (36%), Gaps = 186/913 (20%)

Query: 94   PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG---- 149
                ++++LV   EG Q +  LVS  ++   G +  R+  S +++   EGLI+ +     
Sbjct: 605  QDTANVIVLVKNLEGLQNMYRLVSEAHVDYYGNKKPRVLKSHIEKY-REGLIIGSSLSSH 663

Query: 150  -GSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYD--------RYRES 198
              + G +   +     +  EK +  +   +L     Y  L    G               
Sbjct: 664  FMNDGELSNYYMRYDYEKIEKNIDFYDYIELLPRGAYSELYEDDGTGTISSFTMIEDMNK 723

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
                LA      + A++N  +++E D +   +L+  + S      ++ +     Y +   
Sbjct: 724  YFYNLAKERGKLVTASSNVHYINENDSKIRSILLYGSGSVYR--ANQYKTDNKFYFRTTE 781

Query: 259  EMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
            E+++ F+ L E  A E  V      + +++V  P+   F   + D+ +   +     KA 
Sbjct: 782  ELINEFNYLGEETAKEIVVSGTNAIADMIEVIKPVPDGFYPPKIDNAENIVKEMTYEKAY 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                 R+    +      +  + RL+ EL  I    FS  +L     ++ +  N   VG 
Sbjct: 842  -----RIYGNPL-----PEIVKARLERELGAIIGNGFSVLYLSAQKLVKKSLDNGYLVG- 890

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S+ AY + IT+++ L                                      
Sbjct: 891  SRGSVGSSLVAYMMDITEVNALYPHYICTNPECKNSEFIEREGVGIDLPEKICPKCGQPY 950

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                +S+ FE F+  +   +PD D++F  + + E+ RY +  +G E V +  T  +L  K
Sbjct: 951  KRDGYSIPFEVFMGFNGEKVPDIDLNFSGEYQSEIHRYCEQLFGKENVFKAGTISTLAEK 1010

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V +  +    + +R                                    ++ ++
Sbjct: 1011 NAEGYVRKYFEEHEMKGNR----------------------------------AEIIRLA 1036

Query: 516  QKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIK 570
            +K EG  +    H  G+V+  R   + +  P+ +   D ++D   T F+   +++  L+K
Sbjct: 1037 KKCEGAKKTTGQHPGGMVVVPRDHSIYEFCPVQKPANDEKNDSITTHFDYHVMDEQ-LVK 1095

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------G 616
             D LG    T ++   ++       VD+  IP  D ET  + +                G
Sbjct: 1096 LDILGHDDPTTIKMLQEYTG-----VDIYTIPIADPETLKIFSGTEALGITPDDINSVVG 1150

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            T G+ +  +  +RQ L    P    +++ +  L       ++ + N ++  ++K  ++  
Sbjct: 1151 TFGVPEFGTPFVRQMLIDTMPKTFAELVRISGLSHGT---DVWLNNAQEFIRQKKATLSQ 1207

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I  +  +    +I Q        L  G +    + +R+    K  E      E+F +  
Sbjct: 1208 VI-TVRDDIMNYLIDQ-------GLEKGTAFKIMEFVRKGKPSKDPEGW----EKFSNEM 1255

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             ++ +++    +   +      Y F K HA AY +++ + A+ K HYP+ F AA ++ + 
Sbjct: 1256 KEHDVAEWYIESCRRI-----KYMFPKGHAVAYVMMAMRIAYFKVHYPLAFYAAYLSRKA 1310

Query: 797  DNVE-------KIKK------------------------FCQDARQFNIQIMPPSVNTPC 825
            ++ +       K  K                           +      + +P  V T  
Sbjct: 1311 EDFDYEIMSDPKTAKEHLAVLSKEPKLDVKKKAEMAICEIIVEMYARGYEFLPIDVYTSA 1370

Query: 826  -VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
               F + D +I   L A+ G+G     ++++      F S ED   R    K+++ ++E 
Sbjct: 1371 GFRFTIEDGKIRIPLIALNGLGGAVIENLIKERDISKFLSYEDLKRRT---KISQTIIEK 1427

Query: 885  LVFAGALDCFGYS 897
            L    A+D    +
Sbjct: 1428 LKSINAVDSLSET 1440



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 2   TQYLEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           TQ  + +P   V L  HS  S + G   +++++ +  A    A+AITD   + S     +
Sbjct: 323 TQKTDNAPEKMVELHTHSKMSEMVGVEDISDLIKQAIAYGHKAMAITDYAVVHSFPFAYK 382

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            A     + I+GC++ + + DN +M    K       S V+ 
Sbjct: 383 AAKGKDFKAILGCEMYM-VNDNAEMVRSSKDALIEEESFVVF 423


>gi|237742507|ref|ZP_04572988.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
 gi|229430155|gb|EEO40367.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
          Length = 1449

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 163/947 (17%), Positives = 330/947 (34%), Gaps = 179/947 (18%)

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            N+F  + F +K    G++ +    +  ++               ++ +I++LV T  G +
Sbjct: 576  NMF--IIFLEKYKEKGLEYMKDINIGFEVN----------VKKQSLKNIMVLVKTQAGLK 623

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----GPIDRAFFFNSSQ 165
             +  LVS  ++   G +  RI  S L E   EGLI+ +  ++     G +   +  +  +
Sbjct: 624  NMYRLVSEAHIKYFGNKKARIPKSVLVE-NREGLIIGSSLTAHFMNTGELADLYLRHDLE 682

Query: 166  VAEKRLLTFK--KLFGDRLYVNLQRHRG--------YDRYRESQVVQLAYTHELPLVATN 215
              E+    +   +L     Y  L    G                   L     + + A++
Sbjct: 683  KLEEAAKFYDYIELLPKSTYNELIEKDGTGALGSYEEVEKMNRYFYDLGKKLGILVTASS 742

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALEN 273
            N  +L E +     +L+  +    V    +  +    Y +   EM+  FS L E  A E 
Sbjct: 743  NVHYLDENEDIIRSILLYGSG--TVYNLRQYSINNGFYFRTTDEMLQEFSYLGEDVAKEV 800

Query: 274  TVEIARRCSFILQVH-APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
             V    + + +++    PI   F   + ++ ++        KA      R+    +    
Sbjct: 801  VVTNTNKIADMIESGIRPIPEGFYPPKMENAEEIVRTMTYEKAH-----RIYGDPL---- 851

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
                   RL+ ELN I    FS  +L     ++ +  N   VG  RGS   S+ A+ + I
Sbjct: 852  -PDIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGSSLVAFMMGI 909

Query: 393  TDIDPL-----------------------------------------RFSLLFERFLNPD 411
            T+++ L                                          +S+ FE F+   
Sbjct: 910  TEVNALYPHYICDNPECKHSEFIEREGVGIDLPDKICPKCGKKLRKDGYSIPFEVFMGFK 969

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
               +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V +        
Sbjct: 970  GDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVRKYF------ 1023

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                                        E    +     ++ + +  +G  +    H  G
Sbjct: 1024 ----------------------------EDNNLNAVRAEIIRLGRLCQGAKKTTGQHPGG 1055

Query: 532  IVIGD--RPLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            +VI      + +  P+ R    +      T ++   +++  L+K D LG    T ++   
Sbjct: 1056 MVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDEQ-LVKLDILGHDDPTTIK--- 1111

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
              L Q    +++  IP  D +T  + ++  +LG+   E  G      G+       +  +
Sbjct: 1112 --LLQEYTNMEIKDIPLADKDTLKIFSSTESLGVTP-EQIGTEIGTYGIPEFGTGFVRQM 1168

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQLLS-- 703
            +   RP     +V  +   +G    ++     +         +I  ++ +M         
Sbjct: 1169 LIDTRPTTFAELVRISGLSHGTNVWLNNAQEFVRNGQATLSQIITVRDDIMNYLIDQGLD 1228

Query: 704  -GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
               +    + +R+   KK  E  +K             + +    + +    +  +Y F 
Sbjct: 1229 NSDAFKIMEFVRKGKPKKEPENWEKYSSM---------MKEKKVPDWYIESCRRIEYMFP 1279

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------KIKKF----- 805
            K HA AY +++ + A+ K H P+ F AA ++ + D+ +            K+++      
Sbjct: 1280 KGHAVAYVMMAMRIAYFKVHQPLAFYAAFLSRKADDFDMEFMSRGILAKQKLEELSKEPK 1339

Query: 806  --------------CQDARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGTTTA 850
                            +     I+++P  +       F + DN+I   L  I G+G    
Sbjct: 1340 LDPKKKNEQAICEIVIEMEARGIELLPVDIYLSDGKKFTIEDNKIRIPLIGINGLGGAVI 1399

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
              I++   +  F S+ED   R   ++     L+++   GA+     +
Sbjct: 1400 DAIVKEREEGNFISVEDLKRRTKIQQPVVDKLKNI---GAISSLSET 1443



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L  H+  S + G   + +I+ +       AIAITD + + S     + A         
Sbjct: 331 VELHTHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYSVVHSYPAAFKTAKKLSTDEEK 390

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           I+ I GC++ +   +   +TN           ++  + T
Sbjct: 391 IKAIFGCEMYMIDDEAPMVTNPKDKKIDDEEFVIFDIET 429


>gi|313891131|ref|ZP_07824750.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pseudoporcinus SPIN 20026]
 gi|313120494|gb|EFR43614.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pseudoporcinus SPIN 20026]
          Length = 1466

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 161/919 (17%), Positives = 321/919 (34%), Gaps = 175/919 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+  +       V    + V    G + + +LVS   +    +   RI  + L +   
Sbjct: 604  NTKLVAEDSYKKARVKHATIYVQNQIGLKNIFKLVSLSNVK-YFEGVPRIPRTVLDQY-R 661

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY-----VNLQRHRGYDR 194
            EGL++ TG S G +  A      + A +    +   ++    LY       L + +   +
Sbjct: 662  EGLLLGTGCSEGEVFDAVLTKGVEAAAELANYYDFIEIMPPALYNPLIARELIKDQEGVQ 721

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +       +  +P 
Sbjct: 722  KIIFDLIEVGKRLNKPVLATGNVHYIEPEEAIYREIIVRSLGQGAMINRPIGRGEGAQPA 781

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALE------NTVEIARRCSFILQVHAPILPRFIEKECD 301
              P+ + +  +EM+  F+ L + L       NT + A R   +  V   +   FI+K  +
Sbjct: 782  PLPEAHFRTTNEMLDDFAFLGKELAYQVVVQNTQDFADRIEEVEVVKGDLYTPFIDKAEE 841

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 842  TVAELT----YQKAFE----------IYGNPLPDIIDLRIEKELTSILGNGFAVIYLASQ 887

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +  + +    VG  RGS   S  A  + IT+++P+                       
Sbjct: 888  MLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPHCQHSEFITDGSVGSG 946

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  D +      V++ +G 
Sbjct: 947  YDLPNKNCPECGASYQKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPNAHLDVRDIFGA 1006

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++  K A   V +  +  + ++ R                          
Sbjct: 1007 EYAFRAGTVGTVAEKTAYGFV-KGYERDFGKMYR-------------------------- 1039

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPV 555
                D  VDRL   +    G+ R    H  GIV+      +    P+     DV +    
Sbjct: 1040 ----DAEVDRL---AAGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQFPAEDVTASWQT 1092

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D   IP DD     L +  
Sbjct: 1093 THFNFHDIDE-NVLKLDILGHDDPTMIRKLQDL-----SGIDPKSIPVDDPGVMALFSGT 1146

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V+   P     ++  +   +G +  + + 
Sbjct: 1147 EILGVTP-EQIGTPTGMLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHGTDVWLGNA 1205

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   +   + VI  ++ +M     A L    + +  + +R+ +  KI E    ++  
Sbjct: 1206 QDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISE---DERNS 1262

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I    KN +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1263 YIEAMRKNHVPDWYIESCGKI-----KYMFPKAHAAAYVLMALRVAYFKVHHPIMYYCAY 1317

Query: 792  MTLE-----------------------------------MDNVEKIKKFCQDARQFNIQI 816
             ++                                     +++    +   +  +   + 
Sbjct: 1318 FSIRAKAFELKTMSGGLTAVKARMEDIALKKKTNEASNVENDLYTTLEIVNEMLERGFKF 1377

Query: 817  MPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                   +  ++F++  + +     A++G+G   AR I+ A  +  F S  +   R    
Sbjct: 1378 GKLDLYKSDAIEFQIEGDTLIPPFVALEGLGENVARQIVRARKEGEFLSKMELRKR---G 1434

Query: 876  KLNRRVLESLVFAGALDCF 894
              ++ ++E +   G L   
Sbjct: 1435 GASQSLVEKMDDMGILGNL 1453



 Score = 78.1 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V L  H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  
Sbjct: 335 MPEGQKRVELHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARK 394

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 395 AGIKAIF 401


>gi|253582216|ref|ZP_04859439.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
            ATCC 27725]
 gi|251835755|gb|EES64293.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
            ATCC 27725]
          Length = 1446

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 166/913 (18%), Positives = 335/913 (36%), Gaps = 186/913 (20%)

Query: 94   PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG---- 149
                +I++LV   +G   +  LVS  ++   G +  R+  S +++   EGLI+ +     
Sbjct: 605  QDTSNIIVLVKNLQGLHNMYRLVSEAHVDYYGNKKPRVLKSHIEKY-REGLIIGSSLSSH 663

Query: 150  -GSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYD--------RYRES 198
              + G +   +     +  EK +  +   +L     Y  L    G               
Sbjct: 664  FMNDGELSNYYMRYDYEKIEKNIDFYDYIELLPKGAYSELYEDDGTGTISSFSMIEDMNK 723

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
                LA      + A++N  +++E D +   +L+  + S      ++ +     Y +   
Sbjct: 724  YFYNLAKERGKLVTASSNVHYINETDSKIRSILLYGSGSVYRE--NQYKTDNKFYFRTTE 781

Query: 259  EMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
            E+V+ F  + E  A E  V      + +++V  P+   F   + D+ +   +     KA 
Sbjct: 782  ELVNEFDYMGEDIAKEIVVSGTNTIADMIEVIKPVPDGFYPPKIDNAENIVKEMTYEKAY 841

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                 R+    +      +  + RL+ EL  I    FS  +L     ++ +  N   VG 
Sbjct: 842  -----RIYGNPL-----PEIVKARLERELGAIIGNGFSVLYLSAQKLVKKSLDNGYLVG- 890

Query: 377  GRGSGAGSVTAYALTITDIDPL-------------------------------------- 398
             RGS   S+ AY + IT+++ L                                      
Sbjct: 891  SRGSVGSSLVAYMMDITEVNALYPHYICTNPECKNSEFIEREGVGIDLPEKICPKCGQPY 950

Query: 399  ---RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                +S+ FE F+  +   +PD D++F  + + E+ RY +  +G E V +  T  +L  K
Sbjct: 951  KRDGYSIPFEVFMGFNGEKVPDIDLNFSGEYQSEIHRYCEQLFGKENVFKAGTISTLAEK 1010

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V +  +    + +R                                    ++ ++
Sbjct: 1011 NAEGYVRKYFEEHEMKGNR----------------------------------AEIVRLA 1036

Query: 516  QKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIK 570
            +K EG  +    H  G+V+  R   + +  P+ +   D ++D   T F+   +++  L+K
Sbjct: 1037 KKCEGAKKTTGQHPGGMVVVPRDHSIYEFCPVQKPANDEKNDSITTHFDYHVMDEQ-LVK 1095

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------G 616
             D LG    T ++   ++       VD+  IP  D ET  + +                G
Sbjct: 1096 LDILGHDDPTTIKMLQEYTG-----VDIYTIPIADPETLKIFSGTESLGITPEDINSVVG 1150

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            T G+ +  +  +RQ L    P    +++ +  L       ++ + N ++  ++K  ++  
Sbjct: 1151 TFGVPEFGTPFVRQMLIDTMPKTFAELVRISGLSHGT---DVWLNNAQEFIRQKKATLSQ 1207

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I  +  +    +I Q        L  G +    + +R+    K  E      E+F +  
Sbjct: 1208 VI-TVRDDIMNYLIDQ-------GLEKGTAFKIMEFVRKGKPSKDPEGW----EKFSNEM 1255

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             ++ +++    +   +      Y F K HA AY +++ + A+ K HYP+ F AA ++ + 
Sbjct: 1256 KEHDVAEWYIESCRRI-----KYMFPKGHAVAYVMMAMRIAYFKVHYPLAFYAAYLSRKA 1310

Query: 797  DNVE-------KIKK------------------------FCQDARQFNIQIMPPSVNTPC 825
            ++ +       K  K                           +      + +P  V T  
Sbjct: 1311 EDFDYEIMSDPKTAKEHLAVLSKEPKLDVKKKAEMAICEIIVEMYARGYEFLPIDVYTSA 1370

Query: 826  -VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
               F + D +I   L A+ G+G     ++++      F S ED   R    K+++ ++E 
Sbjct: 1371 GFKFTIEDGKIRIPLIALNGLGGAVIENLIKEREVSKFLSYEDLKRRT---KISQTIIEK 1427

Query: 885  LVFAGALDCFGYS 897
            L    A+D    +
Sbjct: 1428 LKSINAVDSLSET 1440



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 2   TQYLEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            Q  + +P   V L  HS  S + G   +++++ +  A    A+AITD   + S     +
Sbjct: 323 VQKTDNAPEKMVELHTHSKMSEMVGVEDISDLIKQAIAYGHKAMAITDYAVVHSFPFAYK 382

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA 106
            A     + I+GC++ +   D+  + +    P      +V  + T 
Sbjct: 383 AAKGKDFKAILGCEMYMVNDDSEMVRSSKDIPIEEENFVVFDLETM 428


>gi|251797402|ref|YP_003012133.1| DNA polymerase III subunit alpha [Paenibacillus sp. JDR-2]
 gi|247545028|gb|ACT02047.1| DNA polymerase III, alpha subunit [Paenibacillus sp. JDR-2]
          Length = 1437

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 165/948 (17%), Positives = 308/948 (32%), Gaps = 197/948 (20%)

Query: 50   NNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
              LF  +     A    I  +      + +                     +    A G 
Sbjct: 575  GVLFGLI---NDAAERNITGLHQLNDYVGL----------DISNSRPFHCNIYALNAAGK 621

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            + L ++VS  +  +  K+   I  S L ++  EG+++++G   G         S + A +
Sbjct: 622  KNLFKMVSISHT-EHFKRVACIPKSKLVDM-REGILVISGCEKGEFFETVLNKSYEEALE 679

Query: 170  RLLTFK--KLFGDRLYVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
                +   ++     Y++L        R        ++ ++      P++AT N  +L+ 
Sbjct: 680  VARFYDALEIQPVDFYMHLVDKGLVGSRAEIEQAMRRICEIGDELGKPVIATGNVHYLNP 739

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
             D    D+ +   H        +    PD +L+   EM+  F+ L EA    V +  + +
Sbjct: 740  RDKLYRDIAI---HGITGFSPLKDLRKPDAHLRTTEEMLREFAFLGEARAYEVVV--KNT 794

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
              L         F +K    I +  E E+RN      +              Q    RL+
Sbjct: 795  VELSNRFEPFEMFPDKLFTPIIEGAEEEIRNTCYDTAKSMYGDDL------PQVVIDRLE 848

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             EL  I +  FS  +LI    ++ +  +   VG  RGS   SV A  L I++++PL    
Sbjct: 849  KELVPIIKFGFSANYLISEKLVKKSNADGYLVG-SRGSVGSSVVATFLGISEVNPLPAHY 907

Query: 403  L-------------------------------------------FERFLNPDRMSMPDFD 419
            L                                           FE FL      +PD D
Sbjct: 908  LCKNSECRHSEWFLDGSVPSGFDLPDKNCPNCNLPMKGEGQDIPFETFLGFKGDKVPDID 967

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  + +     + +  +G + V +  T G++  K       +  +             
Sbjct: 968  LNFSGEYQPTAHNFTKIMFGDKCVFRAGTIGTVAEKTGYGFARKYAE------------- 1014

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR-- 537
              D +                          L  ++  + G+ R    H  GIV+     
Sbjct: 1015 --DHSKTW-------------------RSAELSRLASGVTGVKRSTGQHPGGIVVVPNYM 1053

Query: 538  PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +  + P+     DV ++   T F+    E   L+K D LG    T+++   D       
Sbjct: 1054 EVEDITPVQFPADDVNAEWKTTHFDYHAFEA-NLLKLDILGHDDPTMMRMLQDLTG---- 1108

Query: 595  KVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLESSGMRQALEGMQPDCI 640
             VD + IP +D +   +  +                T G+ ++ +  +RQ L+  QP   
Sbjct: 1109 -VDPTTIPMNDPKVMSMFNSTKALEVSPEKIRTPVATYGVPEMGTKFVRQMLQETQPSSF 1167

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             D++ +  L     +                 +   LI       + VI  ++ +M    
Sbjct: 1168 ADLLQISGLSHGTGVWLG--------------NAQELIKKGTCNIKTVIGCRDDIMLYLI 1213

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
              +G     A  +  ++ K      +  +E          + +      +       +Y 
Sbjct: 1214 YKAGMDAGLAFKITESVRKGKGLTPEWIEE----------MKRCKVPAWYIDSCLRIEYM 1263

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIKKFCQ 807
            F K+HAAAY + + +TA+ K +YP+ + A   ++  ++ +             KI +   
Sbjct: 1264 FPKAHAAAYVISAVRTAYFKLYYPIHYYATYFSVRAEDFDLELLCQGYDAIQKKIIEIED 1323

Query: 808  --------------------DARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVG 846
                                +         P  +       F V    +    +AI G+G
Sbjct: 1324 KGFNATTKEKNSISLLEMALEMTARGFSFKPIDLYRSDATKFIVDGETLIPPFSAIGGIG 1383

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               AR+I  A     F S+EDF  R    K ++ ++E L   G     
Sbjct: 1384 ENAARNIAAAKDAGEFLSIEDFQQR---SKASKTIIEVLTGMGCFRGL 1428



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +HS+ S ++    +   +   A     AIAITD +N+    E  + A   GIQ + 
Sbjct: 335 VEFHLHSTMSAMDAVTPIGEYVKMAAKWGHKAIAITDHSNIHCYPEAFKSAKKNGIQVLF 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++       + N  +    T   IV  + T
Sbjct: 395 GLEANVVNDAVPMVLNSREAALATAEYIVFDIET 428


>gi|325913471|ref|ZP_08175837.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners UPII 60-B]
 gi|325477240|gb|EGC80386.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners UPII 60-B]
          Length = 1424

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 165/913 (18%), Positives = 319/913 (34%), Gaps = 202/913 (22%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   
Sbjct: 594  RAKPNHMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLH 651

Query: 153  GPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-----VVQLAY 205
            G +  +          +  R+  F ++     Y +L   +     +E Q     + +L  
Sbjct: 652  GDVFISMMQKGYDATREKARIYDFLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKLGK 711

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
               +P+VAT+++ ++ ++D     +L++       + + +    PD +     EM+  FS
Sbjct: 712  ELGIPVVATSDAHYIDKKDAIYRKILLSAQ----KANRGKNYELPDLHFYTTQEMLDAFS 767

Query: 266  DL------PEALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAV 316
             L         ++NT  IA +   +  + + + P  IE   KE + +  ++ +EL     
Sbjct: 768  FLDPKIAEEIVIKNTNIIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHELYG--- 824

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                              +  + RL++EL  I    ++  +LI    +  + K+   VG 
Sbjct: 825  --------------NPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG- 869

Query: 377  GRGSGAGSVTAYALTITDIDPL---------RFSLLFER--------------------- 406
             RGS   S+ A    IT+++PL         ++S  FE+                     
Sbjct: 870  SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCNADL 929

Query: 407  -----------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                       FL      +PD D++F  D +     Y++  +G +   +  T G++  K
Sbjct: 930  AKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADK 989

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V                            +   D++  +   L +  +DRL   S
Sbjct: 990  IAYGYV----------------------------KHYEDENELK---LRNAELDRL---S 1015

Query: 516  QKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIK 570
            Q   G+ R    H AGIV+   D  +    P+             T F+   I    ++K
Sbjct: 1016 QGASGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILK 1074

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKG 616
            FD LG    T+++   D        VD   IP  D     L +                G
Sbjct: 1075 FDILGHDDPTMIRMLQDL-----SGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTG 1129

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            TLG+ +  +  +R  LE  +P    +++ +  L     +      +    G  K+ ++  
Sbjct: 1130 TLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINKGICKLKNVIG 1189

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
              D ++ +     +  E           +S  E+    + +  +    + K K       
Sbjct: 1190 CRDNIMTDLIHWDVPPEVA---------FSTMESVRHGKGISDENMAILSKNKN------ 1234

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
                       + +        Y F K+HA AY +++ + AW K +YPV +  + +++  
Sbjct: 1235 ---------IPDWYIQSCLKIKYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRA 1285

Query: 797  DNVEKIK---------------------------------KFCQDARQFNIQIMPPSVNT 823
            D  + +                                  +   +  +  I I    +  
Sbjct: 1286 DLFDIVAMSHGKNTVKAAMKTIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEK 1345

Query: 824  P-CVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
               ++FK+  ++ I      + G+G   A+ I+ A  ++PF S ED   R    K+++ +
Sbjct: 1346 SDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTI 1402

Query: 882  LESLVFAGALDCF 894
            +E     G LD  
Sbjct: 1403 MEYFENNGVLDGL 1415



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 321 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 380

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++     L + N     +     ++  V T
Sbjct: 381 GYEANMINDQALLVLNPANMDYRGQEYVIFDVET 414


>gi|322517665|ref|ZP_08070529.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124]
 gi|322123697|gb|EFX95287.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124]
          Length = 1424

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/916 (16%), Positives = 313/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++ ++       V    L V    G + + +LVS   +    +   RI  + L E   
Sbjct: 562  NTELVSEDSYKKSRVKHATLYVQNQTGLKNIFKLVSLSNV-SYFEGVARIPRTVLDEY-R 619

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NLQRHRGYDR 194
            EG+I+ +  + G +      +    A +    +   ++    +Y       L +      
Sbjct: 620  EGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYDFIEVMPPAIYAPLIAKGLIKDEAAIE 679

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++A   + P++AT N  +++ ED    +++         +       +  +P 
Sbjct: 680  QLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIVRALGQGAMINRPIGKGENAKPA 739

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALE------NTVEIARRCSFILQVHAPILPRFIEKECD 301
              P+ + +  +EM+  F+ L + L       NT  +A +   +  V   +   FI    D
Sbjct: 740  PLPEAHFRTTNEMLDDFAFLGKDLAYKIVVTNTQAMADQIEEVEVVKKDLYTPFI----D 795

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              +++       KA            +           R++ EL+ I    F+  +L   
Sbjct: 796  RAEEQVAEMTYAKAFE----------LYGNPLPDIIDLRIEKELSSILGNGFAVIYLASQ 845

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------------ 403
              +  + +    VG  RGS   S  A  + IT+++P+    L                  
Sbjct: 846  MLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYLCPKCQHSEFITDGSYGSG 904

Query: 404  -----------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                   FE FL  D   +PD D++F  D +      V++ +G 
Sbjct: 905  FDLPDKECSECGTEYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGE 964

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            +   +  T G++  + A   V +  +  Y++  R                          
Sbjct: 965  QYAFRAGTVGTVADRTAYGFV-KGYERDYNKFYR-------------------------- 997

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  VDRL   +    G+ R+   H  GIV+      +    P+             
Sbjct: 998  ----DAEVDRL---AMGAAGVKRNTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAAWQT 1050

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D   I  DD +   L +  
Sbjct: 1051 THFNFHDIDE-NVLKLDILGHDDPTMIRKLQDL-----SGIDPKDIRADDPDVMKLFSGT 1104

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1105 EILGVTP-EQIGTSTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1163

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   +   + VI  ++ +M            + +  + +R+ M  KI EE   ++  
Sbjct: 1164 QDLIKEGIATLKTVIGCRDDIMVYLMHAGLDPKMAFTIMERVRKGMWLKISEE---ERNG 1220

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I    +N +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1221 YIQAMRENNVPDWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1275

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     E K                                    +   +  +     
Sbjct: 1276 FSIRAKAFELKTMSAGLNAVKTRMEDIKEKRQRNEATNVENDLFTTLEIVNEMLERGFTF 1335

Query: 817  MPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                   +   +F +  + +     A++G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1336 GQLDLYKSQATEFLIEGDTLIPPFIALEGLGENVAKQVVAAREEGEFLSKTELRKR---G 1392

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E L   G L
Sbjct: 1393 GLSSTLVEKLDEMGIL 1408



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++  ++D  A+   PA+AITD  N+ S      +A  
Sbjct: 293 MPEGQKRVEFHAHTNMSTMDAMPTVEELIDTAASWGHPAVAITDHANVQSFPHGYHRAKK 352

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 353 AGIKAIF 359


>gi|296877258|ref|ZP_06901298.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912]
 gi|296431778|gb|EFH17585.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912]
          Length = 1464

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 311/916 (33%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + ++       V    L V    G + + +LVS        +   RI  + L +   
Sbjct: 602  NIDLIDENSYKKARVKHATLYVKNQTGLKNMFKLVSLSGTK-YFEGVPRIPKTVL-DAHR 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 660  EGLILGSACSEGEVFDAVMSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMDELQ 719

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  +L  ED    +++         +  +    +  +P 
Sbjct: 720  TIIKSLIEVGDRLGKPVLATGNVHYLEPEDEIYREIIVRSLGQGAMINRTIGHGEDAQPA 779

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 780  PLPKAHFRTTNEMLDEFAFLGEDLARKIVIENTNALAETFEPVEVVKGDLYTPFIDKAEE 839

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             +   E    R   + G                     R++ EL  I    F+  +L   
Sbjct: 840  TVA--ELTYKRAFEIYG------------NPLPDIVDLRIEKELTSILGNGFAVIYLASQ 885

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +  + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 886  MLVHRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCDQCQYSEFITDGSYGSG 944

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 945  FDMPDKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1004

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  + +                             
Sbjct: 1005 EYAFRAGTVGTVAAKTAYGFV-KGYERDFGK----------------------------- 1034

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +    G+ R    H  GIV+      +    P+         +   
Sbjct: 1035 -YYRDAEVERL---ALGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1090

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1091 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNDIPMDDPGVMALFSGT 1144

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1145 EVLGVT-AEQIGTPTGMLGIPEFGTNFVRGMVEETHPTTFAELLQLSGLSHGTDVWLGNA 1203

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M            + +  + +R+ M  KI EE   ++  
Sbjct: 1204 QDLIKAGIADLSTVIGCRDDIMVYLMHAGLKPKMAFTIMERVRKGMWLKISEE---ERNG 1260

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I    +N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1261 YIQAMKENNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPLYYYCAY 1315

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1316 FSIRAKAFDIKTMGAGLEAVKARMKEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1375

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ I+ A  +  F S  +   R    
Sbjct: 1376 GKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQIVRAREEGEFLSKTELRKR---G 1432

Query: 876  KLNRRVLESLVFAGAL 891
             ++  ++E +   G L
Sbjct: 1433 GVSSTLVEKMDEMGIL 1448



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  ++ K A     A+AITD  N+ S     + A  
Sbjct: 333 MPEGERRVEFHAHTNMSTMDALPEVEELIAKAAEWGHKAVAITDHGNVQSFPHGFKAAKK 392

Query: 65  AGIQPIIGC 73
           AGIQ I G 
Sbjct: 393 AGIQLIYGM 401


>gi|255652455|ref|ZP_05399357.1| DNA polymerase III alpha subunit [Clostridium difficile QCD-37x79]
          Length = 1110

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 196/958 (20%), Positives = 387/958 (40%), Gaps = 108/958 (11%)

Query: 15  QVHSSYS----LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +H   S      +     +  +     +   AIA ++   ++  ++  Q    A I+ I
Sbjct: 17  HLHDDTSNCNGFADSCSKYDEYISLAKENNMKAIAFSNHGGIYDWVKKKQACDNAEIKYI 76

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD------- 123
            G +L   +  NL+  N+G         I L     +G + L  L S+            
Sbjct: 77  HGVELYTCI--NLEDNNRG-------WHIGLYAKNLKGVRELNSLTSKATSKGILKDNSD 127

Query: 124 -QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA-----------EKRL 171
                + RI    L       +I+ +   + P+ +    N   +             + L
Sbjct: 128 RHFYFNPRISFDELMNTSDN-IIITSACLASPLWKLGDTNIIDIEGIEKYNYNIKKRQEL 186

Query: 172 LTFKKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
           L +      R ++ +Q H    +      + + +  + +PL+A  ++   SE   E   V
Sbjct: 187 LEWMSKNNHRCFLEIQYHNCDSQKEYNKMLYEWSILYGIPLIAGTDTHSSSEYKAECRKV 246

Query: 231 LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD---LP-----EALENTVEIARRCS 282
           L    +S    + +      D   KN  ++V  F     LP     EA+ NT ++A    
Sbjct: 247 LQKSKNSFYGEEDE-----FDLTWKNYDDLVDEFKKQNILPIDIILEAINNTNKLAAMVE 301

Query: 283 FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                      ++ +   ++  +  ++ +  K +      L      +      Y+ R+ 
Sbjct: 302 ---DFTLDKTFKYPDLYGENANQTWKDYIDEKLLK-----LINVNAIEKEKIDIYKLRVQ 353

Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            E  ++     + + L VA+ + W K N+I V P RGS  GS+ AY   ITD+D +R+  
Sbjct: 354 EEYEIMCNQGMASFMLFVAELVNWCKDNDIHVSPCRGSVGGSLIAYITGITDVDAIRWKT 413

Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            F RF N DR+S+ D D+DF    R +V  Y+ N++G ++V+ I+TF +++ + ++  + 
Sbjct: 414 AFSRFCNADRISLGDIDLDFSPSDRQKVYEYIINRFGKDKVSYILTFQTIKDRGSIDVLA 473

Query: 463 RALQMPY--------SQVDRLCKLI--------------------PNDPAHPVSLQAIAD 494
           + L               D + K                      P+   H + L  I +
Sbjct: 474 KGLNYDNLNLVKNIKDTFDNIFKEYSKIIIEEINIEELEGKESKSPDFIDHELYLHTIRN 533

Query: 495 DSRFREARLADPSVDRLLEISQ-------KLEGLYRHASTHAAGIVIGDRPLSQLVPM-Y 546
           + + +         D L E ++        + G+     TH AG++     L   + + Y
Sbjct: 534 NKKKQRLIKLKEMWDELREHNKDLFYYFDGIRGVITSKGTHPAGMIGSPITLYDNLGVFY 593

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
           +D   + PV+   MK ++    +KFD LGLKT+ ++Q +   + +            +D 
Sbjct: 594 KDGNENSPVSFCTMKAVDSLNYVKFDILGLKTIGIIQDTYRLINKEWKYAHEINW--NDK 651

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             +  +     +GIFQ E       L   +  C+ D+  + +  RP    +   Y  R  
Sbjct: 652 NVWEDINRIN-VGIFQFEGDYAFDLLSTYKAKCVNDMSLVNASLRP----SGKSYRERLI 706

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            +E   +    ID +LK+  G +++QE  ++    +  +  S AD  RRA+GKK   E++
Sbjct: 707 NREFNKNPSEEIDELLKDNNGFLVFQEDTIKFLTDICDFDGSLADTTRRAIGKKDDVELE 766

Query: 727 KQKERFISGASKNG-----ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
           KQ  + ++G  K+      I++  A    ++++  ++Y F  +H+  Y++  Y    ++ 
Sbjct: 767 KQLPKILNGYCKHSNKPKEIAEKEAKEFIQIISDSSEYQFGYNHSTGYSMNGYICGMLRY 826

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD--NRIYYSL 839
           +YP+EF  + +    DN E +    + A+++ I++          ++ +    N IY  +
Sbjct: 827 YYPLEFTTSYLNWA-DNEEDLNNGIKLAKEYGIEVKNCKFRYSRAEYFMDKKTNTIYKGI 885

Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           ++IK + T  A ++     +  +++       ++ K +N R LE L+     + FG +
Sbjct: 886 SSIKYLNTEVAEYLYSLRNN-EYNTFTKLLIDLN-KNINSRQLEILIKLNFFEEFGKT 941


>gi|24378642|ref|NP_720597.1| DNA polymerase III PolC [Streptococcus mutans UA159]
 gi|32469722|sp|Q8DWE0|DPO3_STRMU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|24376501|gb|AAN57903.1|AE014864_1 DNA polymerase III, alpha subunit [Streptococcus mutans UA159]
          Length = 1465

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 164/946 (17%), Positives = 326/946 (34%), Gaps = 186/946 (19%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F ++A    G+  ++          N K+ +        V    + V   +G + L +LV
Sbjct: 584  FLKEAKEKHGVNNLLDL--------NTKIVDDNSYKKARVKHATIYVLNQKGLKNLFKLV 635

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S   +        RI  + L +   +GL++ T  S G +         + A +    +  
Sbjct: 636  SLSNVT-YFAGVARIPRTILDQY-RDGLLLGTACSDGEVFDTVLSKGVEDAVEVAKYYDF 693

Query: 176  -KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    LY       L +     +     ++++    + P++AT +  +L  ED    +
Sbjct: 694  IEVMPPALYEPLLARELIKDEAGIQQIIKDLIEVGRRLDKPVLATGDVHYLEPEDEIYRE 753

Query: 230  VL-------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
            ++         +       +  +P   P  + +  +EM+  F+ L E L   + I     
Sbjct: 754  IIVRSLGQGAMINRPIGRGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLARDIVI----- 808

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQD 336
                      P  + +  +D++  + + L    +   E ++A+    K +          
Sbjct: 809  --------KNPNEMVERFEDVEVVKTD-LYTPFIENSEEKVAEMTYEKAFEIYGNPLPDI 859

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++
Sbjct: 860  IDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVN 918

Query: 397  PLRF-------------------------------------------SLLFERFLNPDRM 413
            P+                                              + FE FL  D  
Sbjct: 919  PMPPHYICPNPDCKHSEFITDGSVGSGYDLPDKICSECGTPYKKDGQDIPFETFLGFDGD 978

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
             +PD D++F  D +      V++ +G E   +  T G++  + A   V +  +  Y +  
Sbjct: 979  KVPDIDLNFSGDDQPSAHLDVRDIFGEEYAFRAGTVGTVADRTAYGFV-KGYERDYGKFY 1037

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            R                              D  VDRL   +Q   G+ R    H  GIV
Sbjct: 1038 R------------------------------DAEVDRL---AQGSAGVKRTTGQHPGGIV 1064

Query: 534  IGDR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            +      +    P+         +   T FN   I++  ++K D LG    T+++K  D 
Sbjct: 1065 VIPNYMDVYDFTPVQYPADDLTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL 1123

Query: 589  LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
                   +D   IP DD E   L +    LG+ + E  G    + G+       +  +V 
Sbjct: 1124 -----SGIDPKTIPADDPEVMKLFSGTEVLGVTEEEI-GTPTGMLGIPEFGTNFVRGMVD 1177

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSG 704
               P     ++  +   +G +  + +   LI   +     VI  ++ +M     A L   
Sbjct: 1178 ETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIATLSTVIGCRDDIMVYLMHAGLEPK 1237

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
             + +  + +R+    KI EE   ++  +IS   +N +      +  ++      Y F K+
Sbjct: 1238 MAFTIMERVRKGAWLKISEE---ERNGYISAMRENNVPDWYIESCGKI-----KYMFPKA 1289

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------------------KI 802
            HAAAY +++ + A+ K H+P+ +  A  ++     E                      KI
Sbjct: 1290 HAAAYVLMALRVAYFKVHHPIYYYCAYFSIRAKAFELKTMSAGLDAVKARMADISQKRKI 1349

Query: 803  KK-------------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTT 848
             +                +  +   +     +      +F +  + +     A++G+G  
Sbjct: 1350 NQASNVEIDLFTTLEIVNEMLERGFKFGQLDLYRSDATEFIIDGDTLIPPFVALEGLGEN 1409

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             A+ I++A  +  F S  +   R     L+  ++E +   G L   
Sbjct: 1410 VAKQIVKARNEGEFLSKTELRKR---GGLSSTLVEKMSDMGILGSM 1452



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           V    H++ S ++   ++  ++ K A    PA+AITD  N+ S           GI+
Sbjct: 339 VEFHAHTNMSTMDALPTVEQLVAKAAQFGHPAVAITDHGNVQSFPHGYHAGKKNGIK 395


>gi|290579638|ref|YP_003484030.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025]
 gi|254996537|dbj|BAH87138.1| DNA polymerase III alpha subunit [Streptococcus mutans NN2025]
          Length = 1470

 Score =  409 bits (1052), Expect = e-111,   Method: Composition-based stats.
 Identities = 164/946 (17%), Positives = 326/946 (34%), Gaps = 186/946 (19%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F ++A    G+  ++          N K+ +        V    + V   +G + L +LV
Sbjct: 589  FLKEAKEKHGVNNLLDL--------NTKIVDNNSYKKARVKHATIYVLNQKGLKNLFKLV 640

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S   +        RI  + L +   +GL++ T  S G +         + A +    +  
Sbjct: 641  SLSNVT-YFAGVARIPRTILDQY-RDGLLLGTACSDGEVFDTVLSKGVEDAVEVAKYYDF 698

Query: 176  -KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    LY       L +     +     ++++    + P++AT +  +L  ED    +
Sbjct: 699  IEVMPPALYEPLLARELIKDEAGIQQIIKNLIEVGRRLDKPVLATGDVHYLEPEDEIYRE 758

Query: 230  VL-------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
            ++         +       +  +P   P  + +  +EM+  F+ L E L   + I     
Sbjct: 759  IIVRSLGQGAMINRPIGRGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLARDIVI----- 813

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQD 336
                      P  + +  +D++  + + L    +   E ++A+    K +          
Sbjct: 814  --------KNPNEMVERFEDVEVVKTD-LYTPFIENSEEKVAEMTYEKAFEIYGNPLPDI 864

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++
Sbjct: 865  IDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVN 923

Query: 397  PLRF-------------------------------------------SLLFERFLNPDRM 413
            P+                                              + FE FL  D  
Sbjct: 924  PMPPHYICPNPDCKHSEFITDGSVGSGYDLPDKVCSECGTPYKKDGQDIPFETFLGFDGD 983

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
             +PD D++F  D +      V++ +G E   +  T G++  + A   V +  +  Y +  
Sbjct: 984  KVPDIDLNFSGDDQPSAHLDVRDIFGEEYAFRAGTVGTVADRTAYGFV-KGYERDYGKFY 1042

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            R                              D  VDRL   +Q   G+ R    H  GIV
Sbjct: 1043 R------------------------------DAEVDRL---AQGSAGVKRTTGQHPGGIV 1069

Query: 534  IGDR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            +      +    P+         +   T FN   I++  ++K D LG    T+++K  D 
Sbjct: 1070 VIPNYMDVYDFTPVQYPADDLTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL 1128

Query: 589  LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
                   +D   IP DD E   L +    LG+ + E  G    + G+       +  +V 
Sbjct: 1129 -----SGIDPKTIPADDPEVMKLFSGTEVLGVTEEEI-GTPTGMLGIPEFGTNFVRGMVD 1182

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSG 704
               P     ++  +   +G +  + +   LI   +     VI  ++ +M     A L   
Sbjct: 1183 ETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIATLSTVIGCRDDIMVYLMHAGLEPK 1242

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
             + +  + +R+    KI EE   ++  +IS   +N +      +  ++      Y F K+
Sbjct: 1243 MAFTIMERVRKGAWLKISEE---ERNGYISAMRENNVPDWYIESCGKI-----KYMFPKA 1294

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------------------KI 802
            HAAAY +++ + A+ K H+P+ +  A  ++     E                      KI
Sbjct: 1295 HAAAYVLMALRVAYFKVHHPIYYYCAYFSIRAKAFELKTMSAGLDAVKARMADISQKRKI 1354

Query: 803  KK-------------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTT 848
             +                +  +   +     +      +F +  + +     A++G+G  
Sbjct: 1355 NQASNVEIDLFTTLEIVNEMLERGFKFGQLDLYRSDATEFIIDGDTLIPPFVALEGLGEN 1414

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             A+ I++A  +  F S  +   R     L+  ++E +   G L   
Sbjct: 1415 VAKQIVKARNEGEFLSKTELRKR---GGLSSTLVEKMSDMGILGSM 1457



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           V    H++ S ++   ++  ++ K A    PA+AITD  N+ S           GI+
Sbjct: 344 VEFHAHTNMSTMDALPTVEQLVAKAAQFGHPAVAITDHGNVQSFPHGYHAGKKNGIK 400


>gi|313905074|ref|ZP_07838444.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
 gi|313470144|gb|EFR65476.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
          Length = 1536

 Score =  409 bits (1052), Expect = e-111,   Method: Composition-based stats.
 Identities = 171/973 (17%), Positives = 332/973 (34%), Gaps = 187/973 (19%)

Query: 22   LLEGALSLN-NILDKIA----ADQQPAIAITD--TNNLFSALEFSQKACAAGIQPIIGCQ 74
            LL G      + + K           A+   D      +  ++F +      I       
Sbjct: 620  LLPGLSRFKLDTVAKAVGVPLEHHHRAV---DDAECTAWIFVKFVEMLKERNI------- 669

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            LD+D  +     NQ          +++L    EG   L   VS  +L     +  ++  S
Sbjct: 670  LDLDALNKEGSVNQNAIRKMKSHHVIILAKNEEGRVNLYRCVSESHLK-YFNRQAKLPRS 728

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL------LTFKKLFGDRLYVNLQR 188
            +++E   EGLI+ +   +G + +A    +      R+      L  + L  +   +  ++
Sbjct: 729  FIEE-HREGLIIGSACVAGELYQALLRGAPDAEIARIVNFYDYLEIQPLGNNAFLIEDEK 787

Query: 189  HRG-----YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +         +    ++V+L      P+VAT +  F+  ED     ++MA       +  
Sbjct: 788  NPAVTCMEDLQEINRKIVKLGEQFHKPVVATCDVHFMDPEDEIYRRIIMA---GKKFADA 844

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            D+       +L+   EM++ F  L   +A E  +E  ++ + +++  +PI P    K+C 
Sbjct: 845  DKQEPL---FLRTTEEMLAEFEYLGSEKAREVVIENTQKIADMVEKISPIYP----KKCP 897

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             +  + +  LR                      ++   RL+ EL  I    ++  ++I  
Sbjct: 898  PVIPKSDEMLRTICERKAHEIYGPDL------PEEVSARLERELTSIISNGYAVMYIIAQ 951

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------- 399
              +    ++   VG  RGS   S  A    IT+++PL                       
Sbjct: 952  KLVWKCNEDGYLVG-SRGSVGSSFAATMSGITEVNPLPPHYLCHHDYHVEFNTPDVEKYR 1010

Query: 400  -------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                     F++ FE FL       PD D++F  + + +   Y 
Sbjct: 1011 KMGYSGCDMPDKECPVCGKLMDKIGFNIPFETFLGFAGNKEPDIDLNFSGEYQTKAHAYT 1070

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
               +G  +  +  T G+L  K A   V                                 
Sbjct: 1071 SVIFGDGQTFKAGTIGTLADKTAFGFVKNYY----------------------------- 1101

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYR---DV 549
                 E R        +  I +   G+ R    H  GI++      ++ + P+     D 
Sbjct: 1102 -----EERGIHKRTCEIDRIVKGCVGIRRTTGQHPGGIIVLPVGMDINTITPVQHPADDP 1156

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
             SD+  T F+   I+   L+K D LG    T+++   D   +     D + IP D+ +  
Sbjct: 1157 NSDIISTHFDYHSIDS-NLLKLDILGHDDPTMIRMLEDLTGE-----DATKIPLDEPKVM 1210

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L      L +   +  G++    G+        + ++   +P    ++   +   +G +
Sbjct: 1211 SLFQNLSALNLQPSDIRGIKLGTLGIPEFGTSFAMQMLFDTKPQNFTDLCRISGLSHGTD 1270

Query: 670  KIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
              + +   LI          I  ++ +M       + S  S S  + +R+ +  K    +
Sbjct: 1271 VYLGNAETLIKEGKCTLGTAICCRDDIMVYLINRGMDSEESFSIMEKVRKGIIAK---GV 1327

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             K+   +I    ++G+        +    +   Y F K HA AY +++Y+  W K + P+
Sbjct: 1328 CKEWPDWIKDMKEHGVPD-----WYIWSCEKIKYMFPKGHAVAYVMMAYRVGWFKVYKPL 1382

Query: 786  EFLAASM--------------------------TLEMDNVEKIKK-------FCQDARQF 812
             + AA                                D + K+++         ++    
Sbjct: 1383 AYYAAFFSIRAKAFSYEKMCQGRQHLEQIMDEYNSRKDQLSKMEQDQYTDMCLVEEMYAR 1442

Query: 813  NIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
             ++ MP  +       F++ D ++  SL AI G+G+  A  I  A+ D  F S +D   R
Sbjct: 1443 GLEFMPIDIYRVQPHRFQIIDGKLMPSLDAIDGLGSVAADSICLAARDGKFLSKDDLRQR 1502

Query: 872  VDSKKLNRRVLES 884
                K     L+ 
Sbjct: 1503 GKVGKSITDTLDR 1515



 Score = 71.9 bits (175), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           V L  H+  S ++G   +  ++ +      PAIAITD   + +  + + + 
Sbjct: 392 VELHCHTKMSDMDGVSDVRRLVKRAYQWGMPAIAITDHGVVQAFPDANHEM 442


>gi|312862610|ref|ZP_07722851.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            vestibularis F0396]
 gi|311101870|gb|EFQ60072.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            vestibularis F0396]
          Length = 1464

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 157/916 (17%), Positives = 316/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++ ++       V    L V    G + + +LVS   +    +   RI  + L E   
Sbjct: 602  NTELVSEDSYKKSRVKHATLYVQNQTGLKNIFKLVSLSNV-SYFEGVARIPRTVLDEY-R 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NLQRHRGYDR 194
            EG+I+ +  + G +      +    A +    +   ++    +Y      +L +      
Sbjct: 660  EGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYDFIEVMPPAIYAPLIAKDLIKDEAAIE 719

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++A   + P++AT N  +++ ED    +++         +       +  +P 
Sbjct: 720  QLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIVRALGQGAMINRPIGKGENAKPA 779

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALE------NTVEIARRCSFILQVHAPILPRFIEKECD 301
              P+ + +  +EM+  F+ L + L       NT  +A +   +  V   +   FI    D
Sbjct: 780  PLPEAHFRTTNEMLDDFAFLGKDLAYKIVVTNTQAMADQIEEVEVVKKDLYTPFI----D 835

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              +++       KA            +           R++ EL+ I    F+  +L   
Sbjct: 836  RAEEQVAEMTYAKAFE----------LYGNPLPDIIDLRIEKELSSILGNGFAVIYLASQ 885

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------------ 403
              +  + +    VG  RGS   S  A  + IT+++P+    L                  
Sbjct: 886  MLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYLCPKCQHSEFITDGSYGSG 944

Query: 404  -----------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                   FE FL  D   +PD D++F  D +      V++ +G 
Sbjct: 945  FDLPDKECSECGTEYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGE 1004

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            +   +  T G++  + A   V +  +  Y++  R                          
Sbjct: 1005 QYAFRAGTVGTVADRTAYGFV-KGYERDYNKFYR-------------------------- 1037

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  VDRL   +    G+ R+   H  GIV+      +    P+             
Sbjct: 1038 ----DAEVDRL---AMGAAGVKRNTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAAWQT 1090

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D   I  DD +   L +  
Sbjct: 1091 THFNFHDIDE-NVLKLDILGHDDPTMIRKLQDL-----SGIDPKDIRADDPDVMKLFSGT 1144

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1145 EILGVTP-EQIGTSTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1203

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   +   + VI  ++ +M     A L    + +  + +R+ M  KI EE   ++  
Sbjct: 1204 QDLIKEGIATLKTVIGCRDDIMVYLMHAGLDPKMAFTIMERVRKGMWLKISEE---ERNG 1260

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I    +N +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1261 YIQAMRENNVPDWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1315

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     E K                                    +   +  +     
Sbjct: 1316 FSIRAKAFELKTMSAGLNAVKTRMEDIKEKRQRNEATNVENDLFTTLEIVNEMLERGFTF 1375

Query: 817  MPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                   +   +F +  + +     A++G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1376 GQLDLYKSQATEFLIEGDTLIPPFIALEGLGENVAKQVVAAREEGEFLSKTELRKR---G 1432

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E L   G L
Sbjct: 1433 GLSSTLVEKLDEMGIL 1448



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++  ++D  A+   PA+AITD  N+ S      +A  
Sbjct: 333 MPEGQKRVEFHAHTNMSTMDAMPTVEELIDTAASWGHPAVAITDHANVQSFPHGYHRAKK 392

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 393 AGIKAIF 399


>gi|55820164|ref|YP_138606.1| DNA polymerase III PolC [Streptococcus thermophilus LMG 18311]
 gi|81561132|sp|Q5M6H0|DPO3_STRT2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|55736149|gb|AAV59791.1| DNA polymerase III alpha subunit [Streptococcus thermophilus LMG
            18311]
          Length = 1464

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 154/916 (16%), Positives = 316/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++ +        V    L V    G + + +LVS   +    +   RI    L E   
Sbjct: 602  NTELVSDDSYKKSRVKHATLYVQNQTGLKNIFKLVSLSNV-SYFEGVARIPRKVLDEY-R 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NLQRHRGYDR 194
            EG+I+ +  + G +      +    A +    +   ++    +Y      +L +      
Sbjct: 660  EGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYDFIEVMPPAIYAPLIAKDLIKDEEAIE 719

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++A   + P++AT N  +++ ED    +++         +       +  +P 
Sbjct: 720  QLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIVRALGQGAMINRPIGKGENAQPA 779

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P+ + +  +EM+  F+ L +       + NT  +A +   +  V   +   +I    D
Sbjct: 780  PLPEAHFRTTNEMLDEFAFLGKDLAYEIVVANTQAMANQIEEVEVVKKDLYTPYI----D 835

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              +++       KA            +           R++ EL+ I    F+  +L   
Sbjct: 836  RAEEQVAEMTYAKAFE----------LYGNPLPDIIDLRIEKELSSILGNGFAVIYLASQ 885

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------------ 403
              +  + +    VG  RGS   S  A  + IT+++P+    L                  
Sbjct: 886  MLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYLCPKCQHSEFITDGSYGSG 944

Query: 404  -----------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                   FE FL  D   +PD D++F  D +      V++ +G 
Sbjct: 945  FDLPDKECSECGTEYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGE 1004

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            +   +  T G++  + A   V +  +  Y++  R                          
Sbjct: 1005 QYAFRAGTVGTVADRTAYGFV-KGYERDYNKFYR-------------------------- 1037

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  VDRL   +  + G+ R+   H  GIV+      +    P+             
Sbjct: 1038 ----DAEVDRL---AMGVAGVKRNTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAAWQT 1090

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D   I  DD +   L +  
Sbjct: 1091 THFNFHDIDE-NVLKLDILGHDDPTMIRKLQDL-----SGIDPKDIRADDPDVMKLFSGT 1144

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1145 EVLGVTP-EQIGTSTGVLGIPEFGTNFVRGMVEETHPTTFAELLQLSGLSHGTDVWLGNA 1203

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   +   + VI  ++ +M     A L    + +  + +R+ M  KI EE   ++  
Sbjct: 1204 QDLIKEGIATLKTVIGCRDDIMVYLMHAGLDPKMAFTIMERVRKGMWLKISEE---ERNG 1260

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I    +N +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1261 YIQAMRENNVPDWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1315

Query: 792  MTLEMDNV---------EKIK--------------------------KFCQDARQFNIQI 816
             ++              + +K                          +   +  +     
Sbjct: 1316 FSIRAKAFELKTMSAGLDAVKARMEDIKEKRQRNEATNLENDLFTTLEIVNEMLERGFTF 1375

Query: 817  MPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                   +   +F +  + +     A++G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1376 GQLDLYKSQATEFLIEGDTLIPPFIALEGLGENVAKQLVAAREEGEFLSKTELRKR---G 1432

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E L   G L
Sbjct: 1433 GLSSTLVERLDEMGIL 1448



 Score = 78.1 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++  ++D  A    PA+AITD  N+ S      KA  
Sbjct: 333 MPEGQKRVEFHAHTNMSTMDAIPTVEELIDTAAFWGHPAVAITDHANVQSFPHGYHKAKK 392

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 393 AGIKAIF 399


>gi|322382351|ref|ZP_08056258.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
            larvae B-3650]
 gi|321153704|gb|EFX46079.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
            larvae B-3650]
          Length = 1437

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 159/903 (17%), Positives = 309/903 (34%), Gaps = 186/903 (20%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                  +      G + L  LVS  +  +   +   I  S L E+  EGLI+ +G   G 
Sbjct: 609  RPFHCCIYAKDMVGKKNLYRLVSLSHT-EYFHRVACIPKSKLIEL-REGLIIASGCEKGE 666

Query: 155  IDRAFFFNSSQVAEKRLLTF-----KKLFGDRLYVN--LQRHRGYDRYRESQVVQLAYTH 207
               A    S + AE     +     + +  +R  V   L   +        +++++    
Sbjct: 667  FFEAVLNKSMEEAEGIAEFYDVLEIQPVDYNRHLVEKGLVGSKADLEDAVKRIIRIGEKL 726

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
              P++AT N  +L   D    D+ +   +        +    PD + +  S+M+  F  L
Sbjct: 727  GKPVIATGNVHYLHPRDKVCRDITI---NGITGFSPLKDMKKPDAHFRTTSDMLEQFQFL 783

Query: 268  PE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
             +  A E  V+     +   +        F +K    I +  + E+R K     +    +
Sbjct: 784  GKEKAYEVVVKNTNELADRFEELE----LFPDKLFTPIIEGADEEIRTKCYNTAKQIYGE 839

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                     Q    RL+ EL  I +  FS  +LI    ++ + ++   VG  RGS   SV
Sbjct: 840  DL------PQVIIDRLEKELVPIIKYGFSANYLISERLVKKSNEDGYLVG-SRGSVGSSV 892

Query: 386  TAYALTITDIDPLRF-----------------------------------------SLLF 404
             A  L I++++PL                                            + F
Sbjct: 893  VAMMLGISEVNPLPPHYICSSCKHSEWFMDGSVPSGFDLPDKECPHCGGKLKGEGQDIPF 952

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL      +PD D++F  + +     Y +  +G + V +  T G++  K A   V + 
Sbjct: 953  ETFLGFKGDKVPDIDLNFSGEYQPVAHNYTKVLFGEKNVFRAGTIGTVAEKTAFGYVKKY 1012

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
             +                          +   ++R A ++         ++    G+ R 
Sbjct: 1013 EE--------------------------SLGKKWRNAEIS--------RLASGCTGVKRS 1038

Query: 525  ASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GIV+      +  + P+     D +S+   T F+    +   L+K D LG    
Sbjct: 1039 TGQHPGGIVVVPDYIEVDDITPVQFPADDTKSEWKTTHFDYHAFDA-NLLKLDILGHDDP 1097

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLES 625
            T+++   D        VD   IP +D +   +  +                T G+ ++ +
Sbjct: 1098 TMMRMLQDLTG-----VDPLKIPMNDPKVMSIFNSTDALGVTPEQIRSPVGTFGVPEMGT 1152

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
              +RQ L+  QP    D++ +  L     +                 +   LI   +   
Sbjct: 1153 KFVRQMLQETQPSSFADLLQISGLSHGTGVWLG--------------NAQELIRKGICSI 1198

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
            + VI  ++ +M      +G     A  +  ++ K      + ++E          + K  
Sbjct: 1199 KTVIGCRDDIMLYLIYKAGMDAGLAFKITESVRKGKGLTDEWKEE----------MKKHN 1248

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----- 800
              + +    +  +Y F K+HAAAY + + +TA+ K ++P+ F A   ++  ++ E     
Sbjct: 1249 VPDWYIESCERIEYMFPKAHAAAYVISAVRTAYYKLYHPIAFYATYFSVRAEDFELDLLC 1308

Query: 801  ----------------------------KIKKFCQDARQFNIQIMPPSVNTPCVD-FKVG 831
                                         I +   +         P  +     + F + 
Sbjct: 1309 QGYDTILKRLIEIEEKGFQALPKERAMISILEMALEMTARGFSFKPVDLYRSEANKFIID 1368

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             + +    +A+ G+G   A++I  +     F S+EDF +R    K+++ ++E L   G  
Sbjct: 1369 GDSLIPPFSAVPGIGENAAKNIAASREGGDFLSIEDFQTRA---KVSKSIVELLGQMGCF 1425

Query: 892  DCF 894
               
Sbjct: 1426 RGL 1428



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 38/94 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G   +   +   A     AIAITD + +    + ++     G++ I 
Sbjct: 337 VEFHLHTTMSTMDGITPVGEYIKTAAKWGHKAIAITDHSGVQCYPDANKAGKKHGMKVIY 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++       + N  +        +V  + T
Sbjct: 397 GLEANVVNDSVPIVENSKEIKLKEATYVVFDIET 430


>gi|313885310|ref|ZP_07819061.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus
            coleocola ACS-139-V-Col8]
 gi|312619416|gb|EFR30854.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus
            coleocola ACS-139-V-Col8]
          Length = 1435

 Score =  408 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 157/917 (17%), Positives = 311/917 (33%), Gaps = 160/917 (17%)

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            Q +    ++   Q N ++               LLV   +G + L  LVS   +     +
Sbjct: 582  QALADFGMEYHHQLNNQLGQGDAFKQARPMHATLLVKEQDGLKDLFRLVSESNIH-YYHR 640

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVN 185
              R+  S L +   + L++ T  S G +  A        A++    +   ++     Y+ 
Sbjct: 641  VPRVPRSILNKY-RQHLLVGTACSEGEVFTAMMQKGYDEAKELAKYYDFIEIMPKGAYLP 699

Query: 186  LQR----HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            L      H   +     + + ++      P+VAT N  +L E+D    +V+      ++ 
Sbjct: 700  LLHDENIHSEKELEEIIANLYRMGKELNKPVVATGNVHYLDEKDAIYREVVQ----RSLK 755

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEK 298
              + R  V P  + +   EM+  F+ L E  A E  V  ++  +  ++    +       
Sbjct: 756  INQSRDLVLPQVHFRTTDEMLDEFAFLGEEIAYEVVVTNSQAIADSIETIKVVKDELYAP 815

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              +      E+E+             Q         +   +R++ ELN I    F+  +L
Sbjct: 816  RIEGA----EDEITQLTYQRAHELYGQDL------PEIVEKRIEKELNSIINNGFAIMYL 865

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL-------------------- 398
            I    +  + ++   VG  RGS   S+ A    IT+++PL                    
Sbjct: 866  IAQKLVHKSNQDGYLVG-SRGSVGSSLVATFTGITEVNPLAPHYHCPNCQYSEFYTQGEY 924

Query: 399  ---------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  +   +PD D++F  D + +   Y +  
Sbjct: 925  GSGFDLPNKACPKCGAQLAKDGHDIPFETFLGFNGDKVPDIDLNFSGDYQAQAHAYTKVL 984

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G + V +  T G++ AK AL  V          ++ +   +P         QA  +   
Sbjct: 985  FGEDYVYKAGTIGTVAAKTALGYV-------RGYIESVGHQLP---------QAEKE--- 1025

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---D 552
                            ++  +EG+ R    H  GI++      +    P+         D
Sbjct: 1026 ---------------RLAYGIEGVRRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDSSAD 1070

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T F+   I+   ++K D LG    T+++   D        +D + IP DD +   L 
Sbjct: 1071 WRTTHFDFHSIDA-NVLKLDILGHDDPTVIRMLQDLSG-----IDPTTIPTDDADVMKLF 1124

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +    LG+   E         G+       +  +VS  +P     ++  +   +G +  +
Sbjct: 1125 SGTEILGVTP-EQIYSDTGTLGIPEFGTNFVRGMVSETKPKTFAELLQISGLSHGTDVWL 1183

Query: 673  -SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
             +   LI   +     VI  ++ +M                +  A+  KI E    +K +
Sbjct: 1184 GNAQELIKNNVVPLAKVIGCRDDIMVTLIQWG---------MEEALAFKIME--HVRKGK 1232

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
             I    ++ + +      +        Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1233 GIPDDWQDKMREAKVPEWYIDSCLKIKYMFPKAHAAAYVLMALRVAYFKVHHPLYYYCAY 1292

Query: 792  MTLEMDNVEKIKKF---------------------------------CQDARQFNIQIMP 818
             ++   +V+ +  +                                   +  +       
Sbjct: 1293 FSVRAKDVDIVAMYQGKEMVKRRIKEINEKGNDASNKEKELIVELYIANEMLERGYHFKM 1352

Query: 819  PSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
              +      ++ +  + +      I G+G + A  I++A ++  F S ED   R    K 
Sbjct: 1353 VDLEKSQARNYVIESDSLIPPFKTIPGLGASVADQIVQARSEASFLSKEDLSKRGKVSKS 1412

Query: 878  NRRVL-ESLVFAGALDC 893
                + E  +     D 
Sbjct: 1413 LIDYMTEQGIINHLPDE 1429



 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S L+   S  +I+ + AA   PA+AITD   + +  E    A    I+ I 
Sbjct: 334 VELHAHTQMSTLDATNSAKDIIKQAAAWGHPAVAITDHATVQAFPEAYHAAQDNNIKVIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G +  +         N  +        +V  V T
Sbjct: 394 GVEAYLVNDGEPVAYNPKEIALKEATYVVFDVET 427


>gi|157150704|ref|YP_001451113.1| DNA polymerase III PolC [Streptococcus gordonii str. Challis substr.
            CH1]
 gi|157075498|gb|ABV10181.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            gordonii str. Challis substr. CH1]
          Length = 1462

 Score =  408 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 157/912 (17%), Positives = 313/912 (34%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEVMPPAIYEPLIAKEQIKDQEELQ 717

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 718  TIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGENAQPA 777

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L   + I    + +   +    +         D  ++
Sbjct: 778  PLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTPFIDKAEE 837

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     +Q
Sbjct: 838  TVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQ 887

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 888  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMP 946

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 947  DKDCPKCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAF 1006

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1007 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1035

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1036 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1092

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG
Sbjct: 1093 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPTDIPMDDPGVMALFSGTDILG 1146

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            + Q E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1147 VTQ-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1205

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M       L    + +  + +R+ +  KI EE   ++  +I+ 
Sbjct: 1206 KQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEE---ERNGYIAA 1262

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              +N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1263 MKENNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1317

Query: 796  ---------MDNVEKIK--------------------------KFCQDARQFNIQIMPPS 820
                        ++ +K                          +   +  +   +     
Sbjct: 1318 AKAFDIKTMSGGLDAVKRRMSEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFKFGKLD 1377

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +    +A+ G+G   AR ++ A  +  F S  +   R     L+ 
Sbjct: 1378 LYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR---GGLSS 1434

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1435 TLVEKMDDMGIL 1446



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 331 MPEGQKRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 390

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+          +V  V T      L  + + +  +  
Sbjct: 391 AGIQLIYGMEANIVEDRVPIVYNEVDMALSDATYVVFDVETT----GLSAVYNDLIQVAA 446

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D           E+ L  F++   D +
Sbjct: 447 SKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKP--LEQVLKEFQEFCQDSV 504

Query: 183 YVN 185
            V 
Sbjct: 505 LVA 507


>gi|254302688|ref|ZP_04970046.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
            nucleatum subsp. polymorphum ATCC 10953]
 gi|148322880|gb|EDK88130.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
            nucleatum subsp. polymorphum ATCC 10953]
          Length = 1454

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 161/947 (17%), Positives = 331/947 (34%), Gaps = 179/947 (18%)

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            N+F  + F  K    G++ I    +  ++               ++ +I++LV T +G +
Sbjct: 581  NMF--IIFLDKYKEKGLEYIKDINVGFEVN----------VKKQSLKNIMVLVKTQDGLK 628

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----GPIDRAFFFNSSQ 165
             + +LVS  ++   G +  RI  S L E   EGLI+ +  ++     G +   +  +  +
Sbjct: 629  NMYKLVSESHIKYFGNKKARIPKSVLVE-NREGLIIGSSLTAHFMNTGELADLYLRHDLE 687

Query: 166  VAEKRLLTFK--KLFGDRLYVNLQRHRG--------YDRYRESQVVQLAYTHELPLVATN 215
              E+    +   +L     Y  L    G                   L     + + A++
Sbjct: 688  KLEEAAKFYDYIELLPKSTYNELIEKDGTGALGSYEEVEKMNKYFYDLGKRLGILVTASS 747

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALEN 273
            N  +L E +     +L+  +    V    +  +    Y +   EM+  FS L E  A E 
Sbjct: 748  NIHYLDENEDIIRSILLYGSG--TVYNSRQYSINNGFYFRTTDEMLQEFSYLGEDEAKEV 805

Query: 274  TVEIARRCSFILQVH-APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
             ++   + + +++    PI   F   + ++ ++        KA      R+    +    
Sbjct: 806  IIKNTNKIADMIESGIRPIPEGFYPPKMENAEEIVRTMTYEKAH-----RIYGDPL---- 856

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
                   RL+ ELN I    FS  +L     ++ +  N   VG  RGS   S+ A+ + I
Sbjct: 857  -PDIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGSSLVAFMMGI 914

Query: 393  TDIDPL-----------------------------------------RFSLLFERFLNPD 411
            T+++ L                                          +S+ FE F+   
Sbjct: 915  TEVNALYPHYICDNPECKHSEFIEREGVGIDLPDKICPKCGKKLRKDGYSIPFEVFMGFK 974

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
               +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V +        
Sbjct: 975  GDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVRKYF------ 1028

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                                        E    +     ++ + +  +G  +    H  G
Sbjct: 1029 ----------------------------EDNNLNAVRAEIIRLGRLCQGAKKTTGQHPGG 1060

Query: 532  IVIGD--RPLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            +VI      + +  P+ R    +      T ++   +++  L+K D LG    T ++   
Sbjct: 1061 MVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDEQ-LVKLDILGHDDPTTIK--- 1116

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
              L Q    +++  IP  D ET  + ++  +LG+   E  G      G+       +  +
Sbjct: 1117 --LLQEYTNMEIKDIPLADKETLKIFSSTESLGVTP-EQIGTEIGTYGIPEFGTGFVRQM 1173

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQLLS-- 703
            +   RP     +V  +   +G    ++     +         +I  ++ +M         
Sbjct: 1174 LIDTRPTTFAELVRISGLSHGTNVWLNNAQEFVRNGQATLSQIITVRDDIMNYLIDQGLD 1233

Query: 704  -GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
               +    + +R+   KK  E      E+F +   +  +      +   +     +Y F 
Sbjct: 1234 NSDAFKIMEFVRKGKPKKEPENW----EKFSTMMKEKNVPDWYIESCRRI-----EYMFP 1284

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------KIKKF----- 805
            K HA AY +++ + A+ K H P+ F AA ++ + ++ +            K+++      
Sbjct: 1285 KGHAVAYVMMAMRIAYFKVHQPLAFYAAFLSRKAEDFDMEVMSRGILAKQKLEELSKEPK 1344

Query: 806  --------------CQDARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGTTTA 850
                            +     ++++P  +       F + + +I   L  I G+G    
Sbjct: 1345 LDPKKKNEQAICEIVIEMEARGLELLPVDIYLSAGRKFTIENEKIRIPLIGINGLGGAVI 1404

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
              I++   +  F S+ED   R    +     L+++   GA+     +
Sbjct: 1405 DAIVKEREEGKFISIEDLKRRTKMSQPVVDKLKNI---GAISSLSET 1448



 Score = 72.3 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L  H+  S + G   + +++ +       AIAITD + + S     + A         
Sbjct: 336 VELHAHTKMSEMVGVTDVEDLIKRAKEYGHKAIAITDYSVVHSYPAAFKTAKKFSTDEEK 395

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           ++ I GC++ +   +   +TN           +V  + T
Sbjct: 396 MKAIFGCEMYMIDDEAPMVTNPKDKKIDEEEFVVFDIET 434


>gi|322388734|ref|ZP_08062331.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779]
 gi|321140353|gb|EFX35861.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779]
          Length = 1464

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 158/916 (17%), Positives = 316/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            NL + +        V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 602  NLDLISPDSYKKARVKHATIYVKNQVGLKNIFKLVSLSNT-QYFEGVPRIPRTVL-DAHR 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  + G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 660  EGLILGSACTEGEVFDAVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 719

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  ED    +++         +  +    +  +P 
Sbjct: 720  TIIKSLIEVGDRLGKPVLATGNVHYIEPEDEIYREIIVRSLGQGAMINRTIGHGEAAQPA 779

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 780  PLPKAHFRTTNEMLDEFAFLGEDLARKIVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 839

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 840  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 885

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 886  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 944

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 945  FDMPNKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1004

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y ++ R                          
Sbjct: 1005 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKLYR-------------------------- 1037

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                +  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1038 ----EAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1090

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1091 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNDIPMDDPGVMDLFSGT 1144

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   +  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1145 DILGVTPDQI-GTSTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1203

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M            + +  + +R+ +  KI EE   ++  
Sbjct: 1204 QDLIKAGIADLSTVIGCRDDIMVYLMHAGLDPKMAFTIMERVRKGLWLKISEE---ERNG 1260

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1261 YIEAMKANNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1315

Query: 792  MTLEMDNVE-------------KIK----------------------KFCQDARQFNIQI 816
             ++     +             K++                      +   +  +   + 
Sbjct: 1316 FSIRAKAFDIKTMGAGLDAIKRKMQEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1375

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +     ++F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1376 GKLDLYRSDAIEFIIDGDTLIPPFVAMDGLGENVAKQLVRARQEGEFLSKTELRKR---G 1432

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1433 GLSSTLVEKMDEMGIL 1448



 Score = 78.5 bits (192), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 67/183 (36%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     ++AITD  N+ S     + A  
Sbjct: 333 MPEGERRVEFHAHTNMSTMDALPEVEEIVGTAAKWGHKSVAITDHGNVQSFPHGYKAAKK 392

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 393 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 448

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++   + L  F++   D +
Sbjct: 449 SKMYKGNIIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLVQVLKEFQEFCKDTV 506

Query: 183 YVN 185
            V 
Sbjct: 507 LVA 509


>gi|319939893|ref|ZP_08014248.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV]
 gi|319810904|gb|EFW07223.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV]
          Length = 1464

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 156/910 (17%), Positives = 315/910 (34%), Gaps = 164/910 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 602  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRE-- 197
            EGLI+ T  S G +  A        A +    +   ++    +Y  L          E  
Sbjct: 660  EGLILGTACSEGEVFDAVVSQGVDAAVEVAKYYDFIEIMPPAIYAPLIAKEQVKDVEELH 719

Query: 198  ---SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++    + P++AT +  ++  E+    +++         +  +    +  +P 
Sbjct: 720  TIIKNLIEVGNRLDKPVLATGDVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGENAQPA 779

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEI--ARRCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L   V I    + +   +    +         D  ++
Sbjct: 780  PLPKAHFRTTNEMLDEFAFLGEELARQVVIDNPNQLAATFESIEVVKGDLYTPFIDKSEE 839

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +       KA            I          +R++ EL  I    F+  +L     +Q
Sbjct: 840  KVAEMTYAKAFE----------IYGNPLPDIVDRRIERELTSILGNGFAVIYLASQMLVQ 889

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 890  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMP 948

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 949  DKDCPHCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAF 1008

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y++  R                              
Sbjct: 1009 RAGTVGTVAAKTAYGFV-KGYERDYNKFYR------------------------------ 1037

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1038 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDLTAEWQTTHFN 1094

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD E   L +    LG
Sbjct: 1095 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNEIPMDDQEVMALFSGTDVLG 1148

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            + Q E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1149 VTQ-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1207

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M       L    S +  + +R+ M  KI +E   ++  +I+ 
Sbjct: 1208 KQGIADLSTVIGCRDDIMVYLMHKGLEPKMSFTIMERVRKGMWLKISDE---ERNGYIAA 1264

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              +N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1265 MKENNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1319

Query: 796  MDNVE-KIK----------------------------------KFCQDARQFNIQIMPPS 820
                + K+                                   +   +  +   +    +
Sbjct: 1320 AKAFDIKVMSSGLDAVKRKMNEISEKRKNNEASNVEIDLYTTLEIVNEMLERGFKFGKLN 1379

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +    +A+ G+G   A+ +++A A+  F S  +   R        
Sbjct: 1380 LYKSDATEFLIDGDSLIPPFSAMDGLGDNVAKQLVKARAEGEFLSKTELRKRGGLSTTLV 1439

Query: 880  RVLESLVFAG 889
              ++ +   G
Sbjct: 1440 DKMDEMGILG 1449



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    +    H++ S ++    +  ++   A     A+AITD  N+ S     + A  
Sbjct: 333 MPEGEKRIEFHAHTNMSTMDALPEVEELIATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 392

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I         N+          +V  V T      L  + + +  +  
Sbjct: 393 AGIQLIYGMEANIVEDRVPITYNEVDMELKEATYVVFDVETT----GLSAIYNDLIQVAA 448

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F+    D +
Sbjct: 449 SKMYKGNVIAEFDEFINPGHPLSAFTTDLTGITDEHV--KNAKPLEQVLQEFQDFCQDTV 506

Query: 183 YVN 185
            V 
Sbjct: 507 LVA 509


>gi|262283487|ref|ZP_06061253.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA]
 gi|262260978|gb|EEY79678.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA]
          Length = 1462

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 157/912 (17%), Positives = 313/912 (34%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEVMPPAIYEPLIAKEQIKDQEELQ 717

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 718  TIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGENAQPA 777

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L   + I    + +   +    +         D  ++
Sbjct: 778  PLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTPFIDKAEE 837

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     +Q
Sbjct: 838  TVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQ 887

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 888  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMP 946

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 947  DKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAF 1006

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1007 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1035

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1036 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1092

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG
Sbjct: 1093 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPTDIPMDDPGVMALFSGTDILG 1146

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            + Q E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1147 VTQ-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1205

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M       L    + +  + +R+ +  KI EE   ++  +I+ 
Sbjct: 1206 KQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEE---ERNGYIAA 1262

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              +N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1263 MKENNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1317

Query: 796  ---------MDNVEKIK--------------------------KFCQDARQFNIQIMPPS 820
                        ++ +K                          +   +  +   +     
Sbjct: 1318 AKAFDIKTMSGGLDAVKRRMNEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFKFGKLD 1377

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +    +A+ G+G   AR ++ A  +  F S  +   R     L+ 
Sbjct: 1378 LYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR---GGLSS 1434

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1435 TLVEKMDDMGIL 1446



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 331 MPEGQKRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 390

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+          +V  V T      L  + + +  +  
Sbjct: 391 AGIQLIYGMEANIVEDRVPIVYNEVDMALSDATYVVFDVETT----GLSAVYNDLIQVAA 446

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D       S   E+ L  F++   D +
Sbjct: 447 SKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKS--LEQVLKEFQEFCQDSV 504

Query: 183 YVN 185
            V 
Sbjct: 505 LVA 507


>gi|325686582|gb|EGD28608.1| DNA polymerase III PolC [Streptococcus sanguinis SK72]
          Length = 1462

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 156/912 (17%), Positives = 313/912 (34%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEVMPPAIYEPLISKEQIKDQEELQ 717

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT +  ++  E+    +++         +  +    +  +P 
Sbjct: 718  TIIRNLIEVGDRLGKPVLATGDVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGENAQPA 777

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L   + I    + +   +    +         D  ++
Sbjct: 778  PLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTPFIDKAEE 837

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     +Q
Sbjct: 838  TVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQ 887

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 888  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMP 946

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 947  DKDCPKCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGSEYAF 1006

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1007 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1035

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1036 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1092

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG
Sbjct: 1093 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNDIPMDDAGVMALFSGTDILG 1146

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            + Q E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1147 VTQ-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1205

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M       L    + +  + +R+ +  KI EE   ++  +I+ 
Sbjct: 1206 KQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEE---ERNGYIAA 1262

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              +N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1263 MKENNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1317

Query: 796  ---------MDNVEKIK--------------------------KFCQDARQFNIQIMPPS 820
                        ++ +K                          +   +  +   +     
Sbjct: 1318 AKAFDIKTMSGGLDAVKRRMNEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFKFGKLD 1377

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +    +A+ G+G   AR ++ A  +  F S  +   R     L+ 
Sbjct: 1378 LYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR---GGLSS 1434

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1435 TLVEKMDDMGIL 1446



 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 331 MPEGQKRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKSAKK 390

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+          +V  V T      L  + + +  +  
Sbjct: 391 AGIQLIYGMEANIVEDRVPIVYNEVDMALGDATYVVFDVETT----GLSAVYNDLIQVAA 446

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D           E+ L  F++   D +
Sbjct: 447 SKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKP--LEQVLKEFQEFCQDSV 504

Query: 183 YVN 185
            V 
Sbjct: 505 LVA 507


>gi|160934103|ref|ZP_02081490.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753]
 gi|156866776|gb|EDO60148.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753]
          Length = 1451

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 168/901 (18%), Positives = 309/901 (34%), Gaps = 167/901 (18%)

Query: 89   GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLT 148
            G          ++LV  + G + L +L+S  +L D   +  RI  S L +   EGL++ +
Sbjct: 616  GDIKKLRSYHQIILVKNSTGLKNLYKLISYAHL-DYFYKKPRIPKSVLMK-HREGLLIGS 673

Query: 149  GGSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQV 200
               +G + RA            +  F      + L  +   +     +  ++ RE    V
Sbjct: 674  ACEAGELFRAIVSGQPWNELVSIAKFYDYLEIQPLGNNMFMLRDGTVQTEEQLREFNRTV 733

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
            ++L      P+VAT +  F+   D +   +LMA    T   Q+           +   EM
Sbjct: 734  IKLGQELNKPVVATCDVHFMDPHDSDYRKILMAGQGFTDADQQAPLYY------RTTPEM 787

Query: 261  VSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
            +  F+ L +  A E  VE   + + +++  +PI P       D      E +L       
Sbjct: 788  LQEFAYLGKEKAYEVVVENPNKIADMVEEVSPIPPGVFPPFIDGA----EEQLTTITWER 843

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
             +              +    RLD EL+ I +  FS  ++     +  ++ +   VG  R
Sbjct: 844  AKKMYGD------PLPKIVYDRLDRELSSITKHGFSVLYMTAQKLVADSEAHGYLVG-SR 896

Query: 379  GSGAGSVTAYALTITDIDPL---------------------------------------- 398
            GS   S  A    I++++PL                                        
Sbjct: 897  GSVGSSFVATMSGISEVNPLCPHYVCPKCHHSEFITDGSVGSGFDLPDKNCPECGTPYHR 956

Query: 399  -RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
                + FE FL  D    PD D++F  + + +  RY +  +G + V +  T  ++  K  
Sbjct: 957  DGHDIPFETFLGFDGDKTPDIDLNFSGEYQSDAHRYTETLFGKDNVFKAGTIATVAEKTG 1016

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
            +  V +  +   + + R                  A+++R                 +  
Sbjct: 1017 IGFVKKYAESKGTMMHR------------------AEEARL----------------AAG 1042

Query: 518  LEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFD 572
              G+ R    H  G+V+  R   +    P+     D  SD   T F+   I    + K D
Sbjct: 1043 CTGVKRTTGQHPGGMVVVPRGMEVYDFCPVQHPANDQNSDNITTHFDFHSIHDT-ICKLD 1101

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
             LG    T+ +   D+     + V +S     D E   L T+   LG+   +        
Sbjct: 1102 ELGHDVPTIYRYLEDYTGINVMDVSMS-----DPEVMSLFTSTKALGVEPEDIDSQTGTF 1156

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE-KIVSIHPLIDPMLKETQGVIIY 691
              +       +  ++   +P    +++  +   +G +  I +   LI         VI  
Sbjct: 1157 S-LPEVGTHFVRQMLIDSQPKTFSDLLQVSGLSHGTDVWIGNAQDLIANKTCTISEVIGT 1215

Query: 692  QEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++ +M       L    +    ++ R+   KK+  E   Q  R       +G+ +    +
Sbjct: 1216 RDSIMTYLLHKGLEPKMAFKIMEITRKGKAKKLLTEEHYQAMR------DHGVPEWYIES 1269

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK----- 803
              ++      Y F K+HAAAY + + +  W K H PVE+ AA  T+  ++ +        
Sbjct: 1270 CLKI-----KYMFPKAHAAAYMISTLRLGWYKVHRPVEYYAAYFTVRGEDFDAAVVVKGK 1324

Query: 804  ----------------------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNR 834
                                        +   +     I+++P  +       + V D +
Sbjct: 1325 EAVRAKMLEIQQKGKEASAKDNASYATLQIVNEMLARGIEVLPIDIYKSDARKYLVEDGK 1384

Query: 835  IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVL-ESLVFAGALD 892
            I     ++ GVG   A  +  A  +   F S++DF +R    K     L E+  F G  D
Sbjct: 1385 IRLPFGSLPGVGGAAAASLAAARENGGEFISVDDFQARAKVGKAVIETLKETGAFQGLPD 1444

Query: 893  C 893
             
Sbjct: 1445 S 1445



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQKACAAGIQ 68
           V L +H++ S ++G     +++++  A    A+AITD     +   A+         G +
Sbjct: 344 VELHLHTNMSSMDGVTPAADLINRAYAWGHKAVAITDHGVAQAFPDAMNAVNAIRGKGGK 403

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
             +    +    +++    +G++  P     +       G 
Sbjct: 404 IKVIYGTEAYFVNDMVPVVKGESEMPFDGDYISFDLETTGL 444


>gi|307243534|ref|ZP_07525682.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Peptostreptococcus stomatis DSM 17678]
 gi|306493090|gb|EFM65095.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Peptostreptococcus stomatis DSM 17678]
          Length = 1202

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 167/939 (17%), Positives = 315/939 (33%), Gaps = 186/939 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            L F       G++ +          D+ K+               +     +G + L EL
Sbjct: 343  LRFIAMMKKDGVEKLSDINSVYGKIDHTKL---------RPSHATIYAQNYQGLRNLYEL 393

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +S  +L +   +   +  S ++E   +GLI+ +  SSG +  A   N +     ++L F 
Sbjct: 394  ISDSHL-NHFYRQPLMLKSLIKE-KRDGLIIGSACSSGELFNAIQRNKTGEEIDKILDFY 451

Query: 176  KLFG----DRL--YVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                    D L   V     + ++  +    ++V L       +VAT +   L   +   
Sbjct: 452  DFIEIMPLDNLKYLVESGEIKTFEELKNINKKLVDLGNQSGKLVVATGDVHTLDAHERLY 511

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL-PE-ALENTVEIARRCSFIL 285
              VL            +          +   EM+  F+ L PE A    VE + + + + 
Sbjct: 512  RSVLKYSQIPKYKKNIESLH------FRTTDEMLEEFAYLGPETAYRVVVENSNKIADMF 565

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            +   PI  +      D      + ELR       E       I      +   +RL+ EL
Sbjct: 566  ESIKPIPDKTYPPIIDG----SKEELRRMCFDKAER------IYGNPLPEIVEKRLNREL 615

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------ 399
            N I    ++  ++I    +  +  +   VG  RGS   S+ A    IT+++PL       
Sbjct: 616  NSIIGNGYAVMYIIANKLVAKSLSDGYLVG-SRGSVGSSLAATMSDITEVNPLPAHYICP 674

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                   + FE FL  +    PD D++F
Sbjct: 675  NEACKYSEFFGIGEYGSGIDLPDKKCPKCGSQLIKEGQDIPFEVFLGFEGDKEPDIDLNF 734

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
                +  + +Y +  +G     +  T G++Q K A   V                     
Sbjct: 735  SGTYQPTIHKYTEELFGQGYTFRAGTIGTVQEKTAYGYV--------------------- 773

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LS 540
                           F +    D +   +  +++    + R +  H  G+++      + 
Sbjct: 774  -------------RNFSKENHLDLTNAEMTWLTKGCTEVKRTSGQHPGGVMVIPHNMNVH 820

Query: 541  QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+     D  S +  T F+   I    ++K D LG    T+++   D    +     
Sbjct: 821  DFTPVQYPANDKSSGVITTHFDYHSI-SGRILKLDILGHDGPTIIRMLEDMTGIK----- 874

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  T  L T+   LGI   +  G       +     +    ++   +P     
Sbjct: 875  ITDIPLDDPATMSLFTSTKALGIEPEDIDGTTVGSMAIPEFGTKFTRQMLVDTKPTTFAE 934

Query: 658  IVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQLLS-----GYSLSEAD 711
            +V      +G +  ++    L+   +   + VI  ++ +M     +       +++ E+ 
Sbjct: 935  LVRIAGLSHGTDVWLNNAQDLVRANVVGLKEVISTRDDIMNYLIFMGLKPKRAFTIMESV 994

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
               + + KK +E M                 +    + +    K   Y F K+HA AY +
Sbjct: 995  RKGKGLTKKDEEAML----------------ENEVPDWYISSCKKIKYMFPKAHAVAYVM 1038

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KI-------------------K 803
             S++ A+ K +YP  F A   T ++D+ +         K+                    
Sbjct: 1039 TSFRIAYCKVNYPEAFYATYFTTKVDDFDIELITSGIDKVKARLGQIKELGTKATTKENA 1098

Query: 804  KF-----CQDARQFNIQIMPPSVNTP-CVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA 856
            ++       +     I+ M   +      DFK+ G  +I   + +++G+G   A  ++EA
Sbjct: 1099 QYTILEVVVEMYARGIEFMHIDLYESDARDFKIYGPKKILPPMISLQGMGENAALSVVEA 1158

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              D  F S ED   R    K    V+E L   G+L+   
Sbjct: 1159 RKDGKFLSKEDLIKRTKLSKT---VVEKLSNHGSLEGMS 1194



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 33/82 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++  + +  ++++       AIAITD   + +  +    +    I+ I 
Sbjct: 102 VELHAHTKMSSMDSVVGVKKLINRALEWGHKAIAITDHGVVQAFPDAMNASNGKDIKVIY 161

Query: 72  GCQLDIDMQDNLKMTNQGKTPF 93
           G +  I   D   + N     F
Sbjct: 162 GVEAYIVDDDLDIVQNPNDKDF 183


>gi|319945650|ref|ZP_08019902.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641]
 gi|319748249|gb|EFW00491.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641]
          Length = 1463

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 161/916 (17%), Positives = 314/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            NL + +        V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NLDLISPDSYKKARVKHATIYVKNQNGLKNMFKLVSLSNT-QYFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMDELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM------AVAHSTV-VSQKDRPR 247
                 ++++      P++AT N  +L  E+    ++++      A+ + T+   +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYLEPEEEIYREIIVRSLGQGAIINRTIGHGENAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEDLARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +  + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  LLVHRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPNKDCPNCGHQLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  + +                             
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDFGK----------------------------- 1033

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1034 -YYRDAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNDIPMDDPGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DILGVTP-EQIGTSTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M            + +  + +R+ M  KI EE   ++  
Sbjct: 1203 QDLIKAGIADLSTVIGCRDDIMVYLMHAGLDPKMAFTIMERVRKGMWLKIPEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPLYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEAVKARMKEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ I+ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSDATEFIIDGDTLIPPFVAMDGLGENVAKQIVRARKEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             ++  ++E +   G L
Sbjct: 1432 GVSSTLVEKMDEMGIL 1447



 Score = 86.6 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 64/183 (34%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  ++ K A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEELVAKAAKWGHKALAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I         N+          +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPITYNEVDLDLHEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  +   T   +G  D           ++ L  F++   D +
Sbjct: 448 SKMHKGNIIAEFDEFINPGHPISAFTTDLTGITDDHVRNAKP--LKQVLEEFQEFCQDAV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|326803581|ref|YP_004321399.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus
            urinae ACS-120-V-Col10a]
 gi|326651581|gb|AEA01764.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus
            urinae ACS-120-V-Col10a]
          Length = 1437

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 164/951 (17%), Positives = 314/951 (33%), Gaps = 216/951 (22%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A  +         +    Q N  +               +L    +G + L +LVS
Sbjct: 580  FVKEAKESH-------DMVYHDQLNRDIGQGDAYKKGRPFHATILAKNQKGLKDLFKLVS 632

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               + D   +  RI  S L+E   E L++ +  S G +  A      + A+K    +   
Sbjct: 633  ASNV-DYFHRVPRIPRSLLKE-HREHLLIGSACSEGEVFTAAMQKGKETAKKFAEFYD-- 688

Query: 178  FGDRLYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFLSEE 223
                 Y+ +Q    Y+                  + +V +     + +VAT ++ +L+ E
Sbjct: 689  -----YLEIQPKASYEPLLRNQDIINNEALENIINDLVDIGDELGITVVATGDAHYLNPE 743

Query: 224  DYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRC 281
            D    ++L+    S      +R +  P  + +   EM+  F+ L E  A E  V  +   
Sbjct: 744  DKIYREILINSIKS------NRSKYFPRAHFRTTKEMLDDFAFLGEEKAFELVVTNSNAI 797

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            +  ++   PI  +      D  ++   N+   KA       L +    +     D     
Sbjct: 798  ADSIEFVEPIHDKLYTPHIDGAEESIRNDAFTKAHEIYGENLPELIEERLERELD----- 852

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-- 399
                  I    F+  + I    +  + ++   VG  RGS   S  A  L IT+++PL   
Sbjct: 853  -----SIIGNGFAVIYYIAQKLVWKSNEDGYIVG-SRGSVGSSFAATMLGITEVNPLPPH 906

Query: 400  ---------------------------------------FSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL  +   +PD D+
Sbjct: 907  YVCLNCHYSHFYTHGEIGSGFDLEDKDCPECGQPLSKDGHDIPFETFLGFNGDKVPDIDL 966

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  + + +   Y +  +G + V +  T  ++  K A   V                 + 
Sbjct: 967  NFSGEYQAQAHNYTKVLFGEDHVYKAGTISTVADKTAFGYV-----------------LG 1009

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--P 538
             D  H ++L+    D                  +++   G+ R    H  GI++      
Sbjct: 1010 YDRDHNLNLRQTEKDF-----------------LAKGATGVKRTTGQHPGGIIVIPENMD 1052

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         D   T F+   I    ++K D LG    T+++K  D        
Sbjct: 1053 VYDFTPIQYPADEQTADWRTTHFDFHSIHD-NVLKLDCLGHDDPTVIRKLQDL-----SG 1106

Query: 596  VDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++ + IP DD E Y L               +  GTLGI +  +  +RQ LE   P    
Sbjct: 1107 IEPTDIPMDDPEVYKLFNGTESLGVSPEQIFSKTGTLGIPEFGTPFVRQMLEATHPSTFA 1166

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L     +                 +   L+     E + VI  ++ +M     
Sbjct: 1167 ELLQISGLSHGTDVWLG--------------NAETLVSEKGMELKDVIGCRDDIMMDLIH 1212

Query: 702  LS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            +      S    + +R+  G    E     KE  +                +    +   
Sbjct: 1213 MGVPKSDSFQIMEKVRKGKGL-SPEHQAIMKEHEVP-------------EWYMDSCQKIK 1258

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------ 800
            Y F K+HAAAY + + + AW K H+P+ +  A +++  ++ +                  
Sbjct: 1259 YMFPKAHAAAYVINALRVAWFKVHHPIWYYCAYLSVRAEDFDLKAMAGGLESNKDRLKEI 1318

Query: 801  ---------------KIKKFCQDARQFNIQIMPPSVNTP-CVDFKV-GDNRIYYSLAAIK 843
                            + +   +  +  ++     +      DF + G++ +     A+ 
Sbjct: 1319 KAKGNDASAKEKALQIVLELVNEMWERGLKFKMVDLEKSDAKDFVIEGEDTLIAPFRAVS 1378

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL-ESLVFAGALDC 893
            G+G + A+ +++A  + PF S ED   R    +     L E     G  + 
Sbjct: 1379 GLGVSVAQQVVKAREESPFLSKEDLKIRGKVSQSVIDHLDECNALNGLPEE 1429



 Score = 85.0 bits (209), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 44/101 (43%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V L +H++ S L+   S+ + + + AA    AIA+TD  N+ +  E SQ A  
Sbjct: 328 MPEDQKRVELHLHTNMSALDATNSVTDFVKQAAAWGHKAIAVTDHGNVQAFPEASQAAKD 387

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
            G++ I G +  +         N G         ++  V T
Sbjct: 388 TGVKLIYGMEAYVVDDGVPIAYNPGHVELENATYVIFDVET 428


>gi|238916793|ref|YP_002930310.1| DNA polymerase III subunit alpha, the Gram-positive type [Eubacterium
            eligens ATCC 27750]
 gi|238872153|gb|ACR71863.1| DNA polymerase III subunit alpha, the Gram-positive type [Eubacterium
            eligens ATCC 27750]
          Length = 1513

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/927 (19%), Positives = 305/927 (32%), Gaps = 182/927 (19%)

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTV-----PSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
                D D+ D  K+  +GK     +        ++L S   G   L  LVS  +L     
Sbjct: 633  KMLYDRDIPDVDKLNEEGKMDENAIKKLHQYHCIILASNEMGRINLYRLVSASHL-QYFN 691

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL------LTFKKLFGD 180
            +  +I  S + +   EGLI+ +   +G + R+     S+    R+      L  + +  +
Sbjct: 692  RFPKIPKSLVNQY-REGLIIGSACEAGELFRSLVNGRSEAEIARIVNFYDYLEIQPIGNN 750

Query: 181  RLYVN----LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            R  +       ++    R    ++V+L      P+VAT +  FL+ ED     ++MA   
Sbjct: 751  RFMIEKEDCYVQNEEDLRNLNRRIVELGDKFGKPVVATCDVHFLNPEDEVYRRIIMA--- 807

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALE----NTVEIARRCSFILQVHAP 290
                   D        YL    EM+     L   +A E    NT +I   C  I  V   
Sbjct: 808  GKGFDDADN---QAPLYLHTTEEMLHECDYLGSDKAYEVVVTNTNKIMDMCEEIEPVRPD 864

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
              P FIE          +  LR                      Q   +RL+ ELN I  
Sbjct: 865  KCPPFIE--------NSDQMLRTICENRAHEIYGPEL------PQIVTERLERELNSIIS 910

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              +S  ++I    +  +  +   VG  RGS   S+ A    IT+++PL            
Sbjct: 911  NGYSVMYIIAQKLVWKSNDDGYLVG-SRGSVGSSLAATMAGITEVNPLSPHYLCPKCYYN 969

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                              F + FE FL       PD D++F  +
Sbjct: 970  DFYSDEVKAFAGGAGCDMPDKICPKCGAKLNKMGFDIPFETFLGFKGNKEPDIDLNFSNE 1029

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             + +   Y +  +G  +  +  T G++  K A   V +  +   ++              
Sbjct: 1030 YQSKAHAYTEVIFGKGQTFKAGTIGTVAEKTAYGFVMKYFEEKSAK-------------- 1075

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY---RHASTHAAGIVIGD--RPLS 540
                 A+             P V R  EI +  EG     R    H  GIV+      + 
Sbjct: 1076 ----NALEGKP---------PIVKRKCEIERIAEGCIDIRRTTGQHPGGIVVLPIGEEIH 1122

Query: 541  QLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+          +  T F+   I+   L+K D LG    T+++   D        +D
Sbjct: 1123 SFTPVQHPANDMTTSIVTTHFDYHSIDH-NLLKLDILGHLDPTMIRMLQDLTG-----ID 1176

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               IP D  E   L      LGI   +  G +    G+     +  + ++   +P    +
Sbjct: 1177 PLEIPLDSKEVMSLFQNTSALGIKPEDIGGTKLGALGIPEFGTDFAMQMLMDTKPQYFSD 1236

Query: 658  IVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVL 713
            +V      +G +  + +   LI          I  ++ +M       L S  S    +++
Sbjct: 1237 LVRIAGLAHGTDVWLGNAQTLIKEGKATISTAICTRDDIMIYLIQKGLDSEESFKIMEMV 1296

Query: 714  RRAMGK--KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            R+      K KE  + +++    G            + +    +   Y F K+HAAAY +
Sbjct: 1297 RKGKVASGKCKEWPEWKQDMIDHG----------VPDWYIWSCERIKYMFPKAHAAAYVM 1346

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMD--NVEKIK-------------------------- 803
            ++++ A+ K  YP+ +  A  ++     + EK+                           
Sbjct: 1347 MAWRVAYCKVFYPLAYYTAYFSIRATAFDYEKMAMSPVRLEHYIAEYKAKKAEGTISNTE 1406

Query: 804  -------KFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                   +  Q+      +  P  +       F++ D +I  S   I  VG      I  
Sbjct: 1407 EDELGVMRIVQEMHARGYEFTPIDIYKAKARTFQIIDGKIMPSFKVISKVGEVAGESIEI 1466

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVL 882
            A+ D  F S +D   R    +     L
Sbjct: 1467 AARDGEFLSKDDLRQRAKIGQSAIDKL 1493



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           V L  H+  S ++G   +++I+ +       AIAITD   +
Sbjct: 377 VELHCHTKMSDMDGVSYVSDIIKQAIRWGHKAIAITDHGVV 417


>gi|304404288|ref|ZP_07385950.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9]
 gi|304347266|gb|EFM13098.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9]
          Length = 1439

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 168/948 (17%), Positives = 315/948 (33%), Gaps = 197/948 (20%)

Query: 50   NNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
              LF  ++   +    G+  +                              +    A G 
Sbjct: 577  GVLFGLIKDCNERNVTGLHQLNDYVGLDLSNSR-------------PFHCGIYALNAVGK 623

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            + L +L+S  +  +  K+   I  S L E+  EGL++++G   G    +    + + AE 
Sbjct: 624  KNLFKLISLSHT-EHFKRVACIPKSKLTEL-REGLLIISGCEKGEFFESVLNKTEEEAED 681

Query: 170  RLLTFK--KLFGDRLYVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
                +   ++     Y++L        R        +VV++    +  ++AT N  +L+ 
Sbjct: 682  VAQYYDVLEIQPVDFYMHLVEKGLVGSRAEIEEALRRVVRIGKKLDKMVIATGNVHYLNP 741

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
             D    D+ +            +    PD + +   EM+  F+ L E  E   E+  R +
Sbjct: 742  RDKVFRDITI---QGITGFSPLKGMRKPDAHFRTTDEMLREFAFLGE--EKAFEVVVRNT 796

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
              L         F  K    I +  E E+R       +                  QRL+
Sbjct: 797  NELADRFEKFDMFPSKLFTPIIEGAEEEIRATCYDTAKRLYGDEV------PDVIVQRLE 850

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             EL  I    FS  +LI    ++ + ++   VG  RGS   SV A  L I++++PL    
Sbjct: 851  KELVPIIGYGFSANYLISERLVKKSNQDGYLVG-SRGSVGSSVVATFLGISEVNPLPPHY 909

Query: 403  L-------------------------------------------FERFLNPDRMSMPDFD 419
            L                                           FE FL      +PD D
Sbjct: 910  LCPNTACKHSEWFLDGSIRSGFDLPNKACPNCGTNMKGEGQDIPFETFLGFKGDKVPDID 969

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  + +     Y +  +G + V +  T G++  K A     +  +             
Sbjct: 970  LNFSGEYQPIAHNYTKIMFGDKNVFRAGTIGTVAEKTAYGFAKKYEE------------- 1016

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR-- 537
                             ++R A L+         ++    G+ R +  H  GIV+     
Sbjct: 1017 -------------EQGKKWRGAELS--------RLASGCTGVKRSSGQHPGGIVVVPDYI 1055

Query: 538  PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +  + P+     DV ++   T F+    E+  L+K D LG    T+++   D       
Sbjct: 1056 EVEDVTPVQYPADDVNAEWKTTHFDYHAFEE-NLLKLDILGHDDPTMMRMLQDLTG---- 1110

Query: 595  KVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLESSGMRQALEGMQPDCI 640
             VD + IP +D +   +  +                T G+ ++ +  +RQ LE  +P   
Sbjct: 1111 -VDPTTIPMNDPKVMSMFNSTDALGVLPQQIRSAVATYGVPEMGTKFVRQMLEETKPSTF 1169

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             D++ +  L     +                 +   LI       + VI  ++++M    
Sbjct: 1170 ADLLQISGLSHGTGVWLG--------------NAQELIKNNTCTIKTVIGCRDEIMLFLI 1215

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
              +G   + A  +  ++ K      +  +E       +  I   + +           Y 
Sbjct: 1216 YKAGMDAALAFKITESVRKGRGLTPEWIEEMKRCKVPQWYIDSCLKIE----------YM 1265

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIKKFCQ 807
            F K+HAAAY + + +TA+ K ++P+E+ A   T+  ++ +             K+ +  +
Sbjct: 1266 FPKAHAAAYVISAVRTAFFKLYHPIEYYATYFTVRAEDFDLDLLCQGYDAIMRKLVEIEE 1325

Query: 808  --------------------DARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVG 846
                                +         P  +       F V    +    AAI G+G
Sbjct: 1326 KGFNATPKEKNSVSLLEMALEMTARGFSFKPIDLYRSDATKFIVDGQSLIPPFAAIAGIG 1385

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               AR+I  +  D  + S+EDF  +    K  + ++E L   G     
Sbjct: 1386 DNAARNIAASRDDGEYLSIEDFQMK---SKATKTIIEVLGSMGCFRGL 1430



 Score = 75.0 bits (183), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 41/94 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +HS+ S ++   S+++ +   A     AIA+TD +N+    E ++ A   GI  + 
Sbjct: 337 VEFHLHSTMSTMDAVASISDYVKTAAKWGHKAIAVTDHSNVHCYPEAAKAAKKHGINVLF 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++       + +  +        +V  + T
Sbjct: 397 GLEANVINDAVPMVIHPREETLADAEYVVFDIET 430


>gi|222152446|ref|YP_002561621.1| DNA polymerase III PolC [Streptococcus uberis 0140J]
 gi|222113257|emb|CAR40776.1| DNA polymerase III PolC-type [Streptococcus uberis 0140J]
          Length = 1465

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 157/944 (16%), Positives = 323/944 (34%), Gaps = 184/944 (19%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F ++A    G+  ++          N+K+  +       +    + V    G + + +LV
Sbjct: 586  FLKEAREKHGVTDLLDL--------NIKLVAEDSYKKARIKHATIYVQNQTGLKNIFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S   +    +   RI  + L +   +GL++ +  S G +  A      + A +    +  
Sbjct: 638  SLSNVK-YFEGVPRIPRTVLDQY-RDGLLLGSACSEGEVFDAVLTKGVEAATEVAKYYDF 695

Query: 176  -KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y       L + +   +     ++++      P++AT N  ++  ED    +
Sbjct: 696  IEIMPPAIYQPLIAKELIKDQEGVQQTILDLIEVGRRLNKPVIATGNVHYIEPEDEIYRE 755

Query: 230  VL-------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE------NTVE 276
            ++         +       +  +P   P  + +  +EM+  F+ L + L       N+ +
Sbjct: 756  IIVRSLGQGAMINRPIGRGEAAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVQNSQD 815

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
             A     +  V   +   FIEK  + + +        KA            I        
Sbjct: 816  FADLIEEVEVVKGDLYTPFIEKAEETVAELT----YQKAFE----------IYGNPLPDI 861

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++
Sbjct: 862  IDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVN 920

Query: 397  PLRF-----------------------------------------SLLFERFLNPDRMSM 415
            P+                                            + FE FL  D   +
Sbjct: 921  PMPPHYVCPNCQHSEFITDGSVGSGYDLPNKNCPQCGSPYQKDGQDIPFETFLGFDGDKV 980

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +    
Sbjct: 981  PDIDLNFSGDDQPNAHLDVRDIFGEEYAFRAGTVGTVAEKTAYGFV-KGFERDYGK---- 1035

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                         D  VDRL   +    G+ R    H  GIV+ 
Sbjct: 1036 --------------------------YYRDAEVDRL---AAGAAGVKRTTGQHPGGIVVI 1066

Query: 536  DR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+             T FN   I++  ++K D LG    T+++K  D   
Sbjct: 1067 PNYMDVYDFTPVQYPAEDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDL-- 1123

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD     L +    LG+   E  G    + G+       +  +V+  
Sbjct: 1124 ---SGIDPKSIPADDPGVMALFSGTDILGVTP-EQIGTPTGMLGIPEFGTNFVRGMVNET 1179

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYS 706
             P     ++  +   +G +  + +   LI   +   + VI  ++ +M     A L    +
Sbjct: 1180 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMA 1239

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             +  + +R+ M  KI E    ++  +I    +N +      +  ++      Y F K+HA
Sbjct: 1240 FTIMERVRKGMWLKISE---DERNSYIQAMRENNVPDWYIESCGKI-----KYMFPKAHA 1291

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLE------------------------------- 795
            AAY +++ + A+ K H+P+ +  A  ++                                
Sbjct: 1292 AAYVLMALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKSRMEEIALKKKNNE 1351

Query: 796  ----MDNVEKIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                 +++    +   +  +   +        +  ++F++  + +     A++G+G   A
Sbjct: 1352 ASNVENDLYTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIEGDTLIPPFVALEGLGENVA 1411

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            + I++A  D  F S  +   R      ++ ++E +   G L   
Sbjct: 1412 KQIVKARQDGEFLSKMELRKR---GGASQTLVEKMDDMGILGNL 1452



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 33/67 (49%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V L  H++ S ++   ++  ++D  A    PAIAITD  N+ S      +A  
Sbjct: 334 MPEGQKRVELHAHTNMSTMDALPTVETLIDTAAKWGHPAIAITDHANVQSFPHGYHRARK 393

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 394 AGIKAIF 400


>gi|327460706|gb|EGF07041.1| DNA polymerase III PolC [Streptococcus sanguinis SK1]
          Length = 1462

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 157/912 (17%), Positives = 314/912 (34%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEVMPPAIYEPLIAKEQIKDQEELQ 717

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 718  TIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGENAQPA 777

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L   + I    + +   +    +         D  ++
Sbjct: 778  PLPKAHFRTTNEMLDEFAFLGEELAKKLVITNPNQLAETFEPVEVVKGDLYTPFIDKAEE 837

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL+ I    F+  +L     +Q
Sbjct: 838  TVAELTYQKAFE----------IYGNPLPDIVDLRIEKELSSILGNGFAVIYLASQMLVQ 887

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 888  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMP 946

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 947  DKDCPECGRKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGAEYAF 1006

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1007 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1035

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1036 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1092

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG
Sbjct: 1093 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNDIPMDDAGVMALFSGTDILG 1146

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            + Q E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1147 VTQ-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1205

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M       L    + +  + +R+ +  KI EE   ++  +I+ 
Sbjct: 1206 KQGIADLSTVIGCRDDIMVYLMHKGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIAA 1262

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              +N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1263 MKENNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1317

Query: 796  ---------MDNVEKIK--------------------------KFCQDARQFNIQIMPPS 820
                        ++ +K                          +   +  +   +     
Sbjct: 1318 AKAFDIKTMSGGLDAVKRRMDEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFKFGKLD 1377

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +    +A+ G+G   AR ++ A  +  F S  +   R     L+ 
Sbjct: 1378 LYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRARKEGEFLSKTELRKR---GGLSS 1434

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1435 TLVEKMDDMGIL 1446



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 331 MPEGQKRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 390

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+          +V  V T      L  + + +  +  
Sbjct: 391 AGIQLIYGMEANIVEDRVPIVYNEVDMELSNATYVVFDVETT----GLSAVYNDLIQVAA 446

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D           E+ L  F++   D +
Sbjct: 447 SKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKP--LEQVLKEFQEFCQDSV 504

Query: 183 YVN 185
            V 
Sbjct: 505 LVA 507


>gi|327472427|gb|EGF17858.1| DNA polymerase III PolC [Streptococcus sanguinis SK408]
          Length = 1462

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 157/912 (17%), Positives = 314/912 (34%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEVMPPAIYEPLIAKEQIKDQEELQ 717

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 718  TIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGENAQPA 777

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L   + I    + +   +    +         D  ++
Sbjct: 778  PLPKAHFRTTNEMLDEFAFLGEELAKKLVITNPNQLAETFEPVEVVKGDLYTPFIDKAEE 837

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL+ I    F+  +L     +Q
Sbjct: 838  TVAELTYQKAFE----------IYGNPLPDIVDLRIEKELSSILGNGFAVIYLASQMLVQ 887

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 888  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMP 946

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 947  DKDCPECGRKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGAEYAF 1006

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1007 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1035

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1036 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1092

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG
Sbjct: 1093 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNDIPMDDAGVMALFSGTDILG 1146

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            + Q E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1147 VTQ-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1205

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M       L    + +  + +R+ +  KI EE   ++  +I+ 
Sbjct: 1206 KQGIADLSTVIGCRDDIMVYLMHKGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIAA 1262

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              +N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1263 MKENNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1317

Query: 796  ---------MDNVEKIK--------------------------KFCQDARQFNIQIMPPS 820
                        ++ +K                          +   +  +   +     
Sbjct: 1318 AKAFDIKTMSGGLDAVKRRMDEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFKFGKLD 1377

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +    +A+ G+G   AR ++ A  +  F S  +   R     L+ 
Sbjct: 1378 LYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR---GGLSS 1434

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1435 TLVEKMDDMGIL 1446



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 331 MPEGQKRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 390

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+          +V  V T      L  + + +  +  
Sbjct: 391 AGIQLIYGMEANIVEDRVPIVYNEVDMELSNATYVVFDVETT----GLSAVYNDLIQVAA 446

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D           E+ L  F++   D +
Sbjct: 447 SKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKP--LEQVLKEFQEFCQDSV 504

Query: 183 YVN 185
            V 
Sbjct: 505 LVA 507


>gi|324992474|gb|EGC24395.1| DNA polymerase III PolC [Streptococcus sanguinis SK405]
 gi|324995996|gb|EGC27907.1| DNA polymerase III PolC [Streptococcus sanguinis SK678]
 gi|327488780|gb|EGF20579.1| DNA polymerase III PolC [Streptococcus sanguinis SK1058]
          Length = 1462

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 157/912 (17%), Positives = 314/912 (34%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEVMPPAIYEPLIAKEQIKDQEELQ 717

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 718  TIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGENAQPA 777

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L   + I    + +   +    +         D  ++
Sbjct: 778  PLPKAHFRTTNEMLDEFAFLGEELAKKLVITNPNQLAETFEPVEVVKGDLYTPFIDKAEE 837

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL+ I    F+  +L     +Q
Sbjct: 838  TVAELTYQKAFE----------IYGNPLPDIVDLRIEKELSSILGNGFAVIYLASQMLVQ 887

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 888  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMP 946

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 947  DKDCPECGRKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGAEYAF 1006

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1007 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1035

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1036 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1092

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG
Sbjct: 1093 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNDIPMDDAGVMALFSGTDILG 1146

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            + Q E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1147 VTQ-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1205

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M       L    + +  + +R+ +  KI EE   ++  +I+ 
Sbjct: 1206 KQGIADLSTVIGCRDDIMVYLMHKGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIAA 1262

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              +N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1263 MKENNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1317

Query: 796  ---------MDNVEKIK--------------------------KFCQDARQFNIQIMPPS 820
                        ++ +K                          +   +  +   +     
Sbjct: 1318 AKAFDIKTMSGGLDAVKRRMDEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFKFGKLD 1377

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +    +A+ G+G   AR ++ A  +  F S  +   R     L+ 
Sbjct: 1378 LYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR---GGLSS 1434

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1435 TLVEKMDDMGIL 1446



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 331 MPEGQKRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 390

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+          +V  V T      L  + + +  +  
Sbjct: 391 AGIQLIYGMEANIVEDRVPIVYNEVDMELSNATYVVFDVETT----GLSAVYNDLIQVAA 446

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D           E+ L  F++   D +
Sbjct: 447 SKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKP--LEQVLKEFQEFCQDSV 504

Query: 183 YVN 185
            V 
Sbjct: 505 LVA 507


>gi|195978859|ref|YP_002124103.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus
            MGCS10565]
 gi|195975564|gb|ACG63090.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus
            MGCS10565]
          Length = 1465

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 164/921 (17%), Positives = 319/921 (34%), Gaps = 181/921 (19%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F ++A    GI  ++          N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKEAREKHGITNLLQL--------NTDLVAEDSYKKARIKHATIYVQNQLGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNVK-YFEGVPRIPRTVLDQ-HREGLLLGTACSDGEVFDAVLTQGIDAAVDLAKYYDF 695

Query: 176  ------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                   ++   +   L + +         ++++    E P++AT N  ++  ED    D
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGVEQIIRDLIEVGRRAEKPVLATGNVHYIEPEDAIYRD 755

Query: 230  VLMA-------VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE------NTVE 276
            +++        +  +    +  +P   P+ + +  +EM+  F+ L + L       NT  
Sbjct: 756  IIVRSLGQGALINRTIGRGEAAKPVPLPEAHFRTTNEMLDDFAFLGQDLAYEVVVQNTQA 815

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            +A R   +  V   +   +I+K  + +   E    +  A+ G                  
Sbjct: 816  LADRIEEVEVVKGDLYTPYIDKAEETVA--ELTYQKAFAIYG------------NPLPDI 861

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++
Sbjct: 862  IDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVN 920

Query: 397  PLRF-----------------------------------------SLLFERFLNPDRMSM 415
            P+                                            + FE FL  D   +
Sbjct: 921  PMPPHYVCPSCQQSEFITDGSVGSGYDLPNKACPRCGTLYKKDGQDIPFETFLGFDGDKV 980

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D +      V++ +G E   +  T G++  K A   V +  +  Y      
Sbjct: 981  PDIDLNFSGDDQPNAHLDVRDIFGEEYAFRAGTVGTVAEKTAYGFV-KGYERDYG----- 1034

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             K  P                        D  VDRL   +    G+ R    H  GIV+ 
Sbjct: 1035 -KFYP------------------------DAEVDRL---AAGAAGVKRTTGQHPGGIVVI 1066

Query: 536  DR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+     DV +    T FN   I++  ++K D LG    T+++K  D   
Sbjct: 1067 PNYMDVYDFTPVQFPADDVTASWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-- 1123

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD +   L +    LG+   E  G    + G+       +  +V+  
Sbjct: 1124 ---SGIDPITIPADDPDVMALFSGTEVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVNET 1179

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYS 706
             P     ++  +   +G +  + +   LI   +   + VI  ++ +M     A L    +
Sbjct: 1180 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMA 1239

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             +  + +R+ +  KI EE   ++  +I    +N +      +  ++      Y F K+HA
Sbjct: 1240 FTIMERVRKGLWLKISEE---ERSSYIKAMRQNNVPDWYIESCGKI-----KYMFPKAHA 1291

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-KIK---------------------- 803
            AAY +++ + A+ K H+P+ +  A  ++     E K                        
Sbjct: 1292 AAYVLMALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLAAVKARMEDISNKRKRNE 1351

Query: 804  ------------KFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +  +   +        +   +F++  + +     A++G+G   A
Sbjct: 1352 ASNVENDLFTTLEIVNEMLERGFKFGKLDLYKSEATEFQIEGDTLIPPFIALEGLGENVA 1411

Query: 851  RHIMEASADKPFDSLEDFCSR 871
            R I++A  D  F S  +   R
Sbjct: 1412 RQIVKARQDGEFLSKMELRKR 1432



 Score = 75.4 bits (184), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  
Sbjct: 334 MPEGQKRVEFHAHTNMSTMDALPTVEDLIDTAARWGHQAVAITDHANVQSFPHGYHRARK 393

Query: 65  AGIQPII 71
            GI+ I 
Sbjct: 394 VGIKAIF 400


>gi|331082627|ref|ZP_08331750.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400246|gb|EGG79888.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 1487

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 166/937 (17%), Positives = 311/937 (33%), Gaps = 181/937 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +      I          ++ +   ++       PT  +I+L      G   L  L
Sbjct: 619  VKFIEMCAERDI------FNLDELNEKGTVSVHSIQKMPTYHAIIL-AKNDVGRVNLYHL 671

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +S  +L+    +  RI  S   +   EGL++ +   +G + +A      +    RL+ F 
Sbjct: 672  ISDSHLI-YYHRRPRIPKSLFLKY-QEGLLIGSACEAGELYQAVLNGRPEQEIARLVNFY 729

Query: 176  KLFGDRLYVNLQRHRGYD-----------RYRESQVVQLAYTHELPLVATNNSLFLSEED 224
                 +   N       +           +    ++V+L      P+V T +  FL  ED
Sbjct: 730  DYLEIQPLGNNAFMLKNEDRSDITSWEDLQEINKKIVKLGEAFNKPVVGTCDVHFLDPED 789

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCS 282
                 ++MA                   YL+   EM+  FS L       + I    + +
Sbjct: 790  EVYRRIIMAGKGFDDADD------QAPLYLRTTEEMLKEFSYLGREKAEEIVITNPNKIA 843

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
             +++  +PI     + +C  + +  +  LR    +       +         +    RL+
Sbjct: 844  DMVEKISPIH----KGKCPPVIENSDAMLREICYSKAHEIYGENL------PEMVEARLE 893

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             ELN I    ++  ++I    +  +  +   VG  RGS   S  A    IT+++PL    
Sbjct: 894  RELNSIISNGYAVMYMIAQKLVWKSNSDGYLVG-SRGSVGSSFAATMSGITEVNPLSPHY 952

Query: 400  ------------------------------------------FSLLFERFLNPDRMSMPD 417
                                                      F + FE FL       PD
Sbjct: 953  YCAKCYYADFDSEEVRAYSGRAGCDMPDKKCPVCGEPLVKEGFDIPFETFLGFKGDKEPD 1012

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  D + +  RYV+  +G  +  +  T G+L  K A   V                
Sbjct: 1013 IDLNFSGDYQGKAHRYVEVIFGAGQTFKAGTIGTLAEKTAFGYVKNYY------------ 1060

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                                  E R        +  I Q   G+ R    H  GI++   
Sbjct: 1061 ----------------------EERGQRKRYCEINRIVQGCTGVRRTTGQHPGGIIVLPI 1098

Query: 538  --PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
               + +  P+     D+ SD+  T F+   I+   L+K D LG    T+++   D     
Sbjct: 1099 GWDIEEFTPVQHPANDMNSDIITTHFDYHSIDS-NLLKLDILGHDDPTMIRMLEDLTGIN 1157

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                    IP D  E   L      LGI   +  G      G+     +  + ++    P
Sbjct: 1158 AR-----EIPLDSKEVMSLFKNTDALGITPDDIRGCPLGCLGIPEFGTDFAMQMLIDANP 1212

Query: 653  GPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLS 708
                ++V  +   +G +  + +   LI          I  ++ +M       L  G + +
Sbjct: 1213 TSFSDLVRISGLSHGTDVWLGNAQDLIKSGTATITTCICTRDDIMIYLINKGLEHGQAFT 1272

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
              + +R+  G K  E +++ K+  +              + +    K   Y F K+HAAA
Sbjct: 1273 IMESVRKGKGLK-PEWIEEMKKHDVP-------------DWYIESCKKIKYMFPKAHAAA 1318

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLE--------------------------------- 795
            Y ++ ++ A+ K  +P+ + AA  ++                                  
Sbjct: 1319 YVMMGWRIAYCKIFHPLAYYAAYFSIRATAFSYELMCQGKEKLEYFMDDYEKRKDTLSKK 1378

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIM 854
              +  K  +  Q+        +P  +       F++ D ++  +L  I+G+G   A  ++
Sbjct: 1379 EQDTYKDMRIVQEMYARGFDFVPIDIYKANAHTFQIIDGKLMPALDTIEGLGDRAADAVV 1438

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             A+ +  F SL+DF +R         ++  L   G L
Sbjct: 1439 AAAEEGNFLSLDDFRNRTKVTSSTIDLMNDLGLFGKL 1475



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
           V L  H+  S ++G      ++ +       AIAITD   + +  E 
Sbjct: 370 VELHCHTKMSDMDGVSDAKALIKRAYEWGHKAIAITDHGVVQAFPEA 416


>gi|322375786|ref|ZP_08050297.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. C300]
 gi|321279054|gb|EFX56096.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. C300]
          Length = 1463

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/938 (17%), Positives = 319/938 (34%), Gaps = 183/938 (19%)

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            + A   G+  +           N+ + +        +    + V    G + + +LVS  
Sbjct: 587  EAAEKHGVTDLARL--------NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLS 638

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KL 177
                  +   RI  + L +   EGLI+ +  S G +  A        A +    +   ++
Sbjct: 639  NTK-YFEGVPRIPRTVL-DAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696

Query: 178  FGDRLYVNLQRHRGYDRYRESQ-----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL- 231
                +Y  L          E Q     ++++      P++AT N  ++  E+    +++ 
Sbjct: 697  MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 232  ------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIAR 279
                    +  +    +  +P   P  + +  +EM+  F+ L E       +ENT  +A 
Sbjct: 757  RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEDLARKLVIENTNVLAE 816

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
                +  V   +   FI+K  + + +        KA            I           
Sbjct: 817  IFEPVEVVKGDLYTPFIDKAEETVAELT----YKKAFE----------IYGNPLPDIVDL 862

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++PL 
Sbjct: 863  RIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLS 921

Query: 400  F-----------------------------------------SLLFERFLNPDRMSMPDF 418
                                                       + FE FL  D   +PD 
Sbjct: 922  PHYVCGQCQYSEFITDGSYGSGFDMPNKDCPKCGHKLSKNGQDIPFETFLGFDGDKVPDI 981

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R    
Sbjct: 982  DLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR---- 1036

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR- 537
                                      D  V+RL   +Q   G+ R    H  GIV+    
Sbjct: 1037 --------------------------DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNY 1067

Query: 538  -PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
              +    P+         +   T FN   I++  ++K D LG    T+++K  D      
Sbjct: 1068 MDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL----- 1121

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              +D + IP DD     L +    LG+   E  G    + G+       +  +V    P 
Sbjct: 1122 SGIDPNEIPMDDEGVMALFSGTDVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPT 1180

Query: 654  PIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSE 709
                ++  +   +G +  + +   LI   + +   VI  ++ +M     A L    + + 
Sbjct: 1181 TFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTI 1240

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             + +R+ +  KI EE   ++  +I     N + +    +  ++      Y F K+HAAAY
Sbjct: 1241 MERVRKGLWLKISEE---ERNGYIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAY 1292

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE-KIK------------------------- 803
             +++ + A+ K H+P+ +  A  ++     + K                           
Sbjct: 1293 VMMALRVAYFKVHHPIYYYCAYFSIRAKAFDIKTMGAGLDAIKRRMEEIAEKRKNNEASN 1352

Query: 804  ---------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
                     +   +  +   +     +      +F +  + +     A+ G+G   A+ +
Sbjct: 1353 VEIDLYTTLEIVNEMWERGFKFGKLDLYRSDATEFIIDGDTLIPPFVAMDGLGENVAKQL 1412

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + A  +  F S  +   R     L+  ++E +   G L
Sbjct: 1413 VRAREEGEFLSKTELRKR---GGLSSTLVEKMDEMGIL 1447



 Score = 83.1 bits (204), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   + +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKNTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|19703626|ref|NP_603188.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
            nucleatum ATCC 25586]
 gi|19713736|gb|AAL94487.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
            nucleatum ATCC 25586]
          Length = 1454

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/950 (17%), Positives = 328/950 (34%), Gaps = 185/950 (19%)

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            N+F  + F  K    G++ +    +  ++               ++ +I++LV T +G +
Sbjct: 581  NMF--IIFLDKYKEKGLEYMKDINVGFEVN----------VKKQSLKNIMVLVKTQDGLK 628

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----GPIDRAFFFNSSQ 165
             +  LVS  ++   G +  RI  S L E   EGLI+ +  ++     G +   +  +  +
Sbjct: 629  NMYRLVSEAHIKYFGNKKARIPKSVLTE-NREGLIIGSSLTAHFMNIGELADLYLRHDLE 687

Query: 166  VAEKRLLTFK--KLFGDRLYVNLQRHRG--------YDRYRESQVVQLAYTHELPLVATN 215
              E+    +   +L     Y  L    G                   L     + + A++
Sbjct: 688  KLEEAAKFYDYIELLPKSTYNELIEKDGTGALGSYEEVEKMNKYFYDLGKRLGILVTASS 747

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ 269
            N  +L E +     +L+  +    V    +  +    Y +   EM+  FS L +      
Sbjct: 748  NVHYLDENEDIIRSILLYGSG--TVYNSRQYSINNGFYFRTTDEMLQEFSYLGDEKVKEV 805

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
             + NT +IA      +    PI   F   + ++ ++        KA      R+    + 
Sbjct: 806  VITNTNKIADMIESGI---KPIPEGFYPPKMENAEEIVRTMTYEKAY-----RIYGDPL- 856

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                      RL+ ELN I    FS  +L     ++ +  N   VG  RGS   S+ A+ 
Sbjct: 857  ----PNIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGSSLVAFM 911

Query: 390  LTITDIDPL-----------------------------------------RFSLLFERFL 408
            + IT+++ L                                          +S+ FE F+
Sbjct: 912  MGITEVNALYPHYICDNSECKYSEFIEREGVGIDLPDKICPKCGAKLRKDGYSIPFEVFM 971

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
                  +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V +     
Sbjct: 972  GFKGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVRKYF--- 1028

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
                                           E    +     ++ + +  +G  +    H
Sbjct: 1029 -------------------------------EDNNLNAVRAEIIRLGRLCQGAKKTTGQH 1057

Query: 529  AAGIVIGD--RPLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
              G+VI      + +  P+ R    +      T ++   +++  L+K D LG    T ++
Sbjct: 1058 PGGMVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDEQ-LVKLDILGHDDPTTIK 1116

Query: 584  KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
                 L Q    +++  IP  D +T  + ++  +LG+   E  G      G+       +
Sbjct: 1117 -----LLQEYTNIEIKDIPLADKDTLKIFSSTESLGVTP-EQIGTEIGTYGIPEFGTGFV 1170

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
              ++   RP     +V  +   +G    ++     +         +I  ++ +M      
Sbjct: 1171 RQMLIDTRPTTFAELVRISGLSHGTNVWLNNAQEFVRNGQATLSQIITVRDDIMNYLIDQ 1230

Query: 703  S---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
                  S    + +R+   KK  E  +K             + +    + +    +  +Y
Sbjct: 1231 GLDNSDSFKIMEFVRKGKPKKEPENWEKYSAM---------MKEKNVPDWYIESCRRIEY 1281

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------KIKKF-- 805
             F K HA AY +++ + A+ K H P+ F AA ++ + D+ +            K+++   
Sbjct: 1282 MFPKGHAVAYVMMAMRIAYFKVHQPLAFYAAFLSRKADDFDMEVMSRGILAKQKLEELSK 1341

Query: 806  -----------------CQDARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGT 847
                               +     ++++P  +       F + D +I   L  I G+G 
Sbjct: 1342 EPKLDPKKKNEQAICEIVVELEARGLELLPVDIYLSDGKKFTIEDGKIRIPLIGINGLGG 1401

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
                 I++   +  F S+ED   R   ++     L+++   GA+     +
Sbjct: 1402 AVIDAIVKEREEGKFISVEDLKRRTKIQQPVVDKLKNI---GAISSLSET 1448



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L  H+  S + G   + +I+ +       AIAITD + + S     + A         
Sbjct: 336 VELHAHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYSVVHSYPAAFKTAKKFSTDEEK 395

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           ++ I GC++ +   +   +TN           +V  + T
Sbjct: 396 MKAIFGCEMYMIDDEAPMVTNPKDKKIDDEEFVVFDIET 434


>gi|257452473|ref|ZP_05617772.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
 gi|317059014|ref|ZP_07923499.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
 gi|313684690|gb|EFS21525.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
          Length = 1450

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 176/980 (17%), Positives = 347/980 (35%), Gaps = 189/980 (19%)

Query: 18   SSY--SLLEGALSLNNILDKIAADQQP------AIAITDTNNLFSALEFSQKACAAGIQP 69
            S +  S ++      ++  ++             +++ + +             A G   
Sbjct: 527  SDFNPSFIDTLQMAKDLYPELKQFGLGPLNKKLGLSLENHH------RAVDDCQATGNMF 580

Query: 70   IIGCQLDIDMQDNLKMTNQGKTP----FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            +I     +D   +     QG  P         +++LLV    G + L  LVS  +L   G
Sbjct: 581  LIFLDKYLDQGIHKLSEMQGAFPVNTKKQNTRNVMLLVKDRVGLENLNRLVSDAHLYHFG 640

Query: 126  KQSVRICLSWLQEIGTEGLIM---LTGGS--SGPIDRAFFFNSSQVAEKRLLTFK--KLF 178
             +  R+  S L++   EGLI+   LTG S     +   +   + +   K++  +   +L 
Sbjct: 641  NRKPRVLKSNLEKY-REGLIVGCSLTGHSINDSDLFHDYSTGNVERIPKKISFYDYIELL 699

Query: 179  GDRLYVNLQRHRG--------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              + Y     + G        Y          LA    + +  ++N  +L  E+ +   +
Sbjct: 700  PRQAYTENIEYNGTGLISGNSYIEKMNQYFYDLAKEKGILVTGSSNVHYLDPEEAKIRTI 759

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA------LENTVEIARRCSFI 284
            L+      V   K         Y +   E++  FS L E       ++NT  IA +   I
Sbjct: 760  LL-YGSGMVHGAKAYKTDNG-FYFRTTGELLEEFSYLGEEAAKEILIQNTNAIAEKIEVI 817

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                 PI   F     D+ ++        KA      R+    +      +   +RL+ E
Sbjct: 818  ----KPIPDGFYPPSIDNAEETVREMTYEKAY-----RIYGNPL-----PEIVEKRLERE 863

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------ 398
            LN I    FS  +L     ++ +  N   VG  RGS   S+ A+ + IT+++ L      
Sbjct: 864  LNAIIGNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGSSLVAFMMGITEVNALYPHYIC 922

Query: 399  -----------------------------------RFSLLFERFLNPDRMSMPDFDIDFC 423
                                                +S+ FE F+  +   +PD D++F 
Sbjct: 923  TNPDCKHVEFIEREGVGIDLPEKKCPKCGQMYKRDGYSIPFEVFMGFNGDKVPDIDLNFS 982

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + + E+ RY +  +G E V +  T  +L  K A   V +  +               D 
Sbjct: 983  GEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAAGYVKKYFE---------------DN 1027

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQ 541
               +S                      ++ +++K EG  +    H  G+V+   D  + +
Sbjct: 1028 GMSIS-------------------QAEVMRLAKKCEGAKKTTGQHPGGMVVVPSDHTIFE 1068

Query: 542  LVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
              P+ +   D  SD   T ++   +++  L+K D LG    T ++   ++       +D+
Sbjct: 1069 FCPVQKPANDENSDSITTHYDYHVMDEQ-LVKLDILGHDDPTTIKLLQEYTG-----LDI 1122

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP  D +T  + ++  +LG+   +  G   A  G+       +  ++   RP     +
Sbjct: 1123 YEIPLSDPDTLKIFSSTESLGVTP-QQIGSEVATFGIPEFGTPFVRQMLLDTRPTTFAEL 1181

Query: 659  VVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLR 714
            V  +   +G +  ++     I         VI  ++ +M       +  G +    + +R
Sbjct: 1182 VRISGLSHGTDVWLNNAQDFIRQKQATLSEVITVRDDIMNYLIDQGIEKGTAFKIMEFVR 1241

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +    K  E   K  +          + +    + +    +   Y F K HA AY +++ 
Sbjct: 1242 KGKPSKDPEGWKKYSDL---------MKEKHVKDWYIESCRRIKYMFPKGHAVAYVMMAI 1292

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNV--------EKIKKFCQ------------------- 807
            + A+ K HYP+ F AA ++ + ++         EK +   +                   
Sbjct: 1293 RIAYFKVHYPLAFYAAYLSRKAEDFNFETLGTPEKARIRLEELSKEGKLDVKKKAEQALC 1352

Query: 808  ----DARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
                +    +I+++P    ++    F +  ++I   L A+ G+G     +I+E    + F
Sbjct: 1353 EVMIEMEARHIELLPIDLYHSSGKKFLIQGDKIRVPLIALAGLGGAVIDNILEERQKESF 1412

Query: 863  DSLEDFCSRVDSKKLNRRVL 882
             S+EDF  R    +     +
Sbjct: 1413 ISIEDFKKRTKVSQTIVEKM 1432



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 32/66 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S + G   + +I+ +       A+AITD   + S     + A  AGI+ I+
Sbjct: 337 VELHTHTKMSEMVGVTEVGDIIKRAKQYGHSAVAITDYGVVHSFPGAHKAAKEAGIKAIL 396

Query: 72  GCQLDI 77
           GC+  +
Sbjct: 397 GCEAYM 402


>gi|322392646|ref|ZP_08066106.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780]
 gi|321144638|gb|EFX40039.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780]
          Length = 1463

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 158/916 (17%), Positives = 311/916 (33%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARVKHATIYVKNQIGLKNIFKLVSLSNT-QYFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNL-----QRHRGYDR 194
            EGLI+ T  + G +           A +    +   ++    +Y  L      +      
Sbjct: 659  EGLILGTACAEGEVFDTILSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDLAELE 718

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-------VAHSTVVSQKDRPR 247
                 ++++      P++AT N  +L  ED    ++++        +  +    +  +P 
Sbjct: 719  TIIKNLIEVGDRLGKPVLATGNVHYLEPEDEIYREIIVRSLGQGAVINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       ++NT  +A     I  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEDLARKLVIDNTNAMAEIFEPIEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +  + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVHRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCSQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPNKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++  K A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVADKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                +  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----EAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNEIPMDDPGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTSTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ M  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGMWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLDAIKRRMQEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSQATEFIIDGDTLIPPFVAMDGLGENVAKQLVRARQEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 86.2 bits (212), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 69/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  ++ K A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEELVAKAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  ++ L  F++   D +
Sbjct: 448 SKMYKGNIIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLKQVLQEFQEFCQDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|225867817|ref|YP_002743765.1| DNA polymerase III PolC-type [Streptococcus equi subsp.
            zooepidemicus]
 gi|197941223|gb|ACH78331.1| DNA polymerase [Streptococcus equi subsp. zooepidemicus]
 gi|225701093|emb|CAW97928.1| DNA polymerase III PolC-type [Streptococcus equi subsp.
            zooepidemicus]
          Length = 1465

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 163/921 (17%), Positives = 318/921 (34%), Gaps = 181/921 (19%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F ++A    GI  ++          N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKEAREKHGITNLLQL--------NTDLVAEDSYKKARIKHATIYVQNQLGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNVK-YFEGVPRIPRTVLDQY-REGLLLGTACSDGEVFDAVLTQGIDAAVDLAKYYDF 695

Query: 176  ------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                   ++   +   L + +         ++++    + P++AT N  ++  ED    D
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGVEQIIRDLIEVGRRAQKPVLATGNVHYIEPEDAIYRD 755

Query: 230  VL-------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE------NTVE 276
            ++         +  +    +  +P   P+ + +  +EM+  F+ L + L       NT  
Sbjct: 756  IIVRSLGQGAMINRTIGRGEAAKPVPLPEAHFRTTNEMLDDFAFLGKDLAYEVVVKNTQA 815

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            +A R   +  V   +   +I+K  + +   E    +  A+ G                  
Sbjct: 816  LADRIEEVEVVKGDLYTPYIDKAEETVA--ELTYQKAFAIYG------------NPLPDI 861

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++
Sbjct: 862  IDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVN 920

Query: 397  PLRF-----------------------------------------SLLFERFLNPDRMSM 415
            P+                                            + FE FL  D   +
Sbjct: 921  PMPPHYVCPSCQHSEFITDGSVGSGYDLPNKACPRCGTLYKKDGQDIPFETFLGFDGDKV 980

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D +      V++ +G E   +  T G++  K A   V +  +  Y      
Sbjct: 981  PDIDLNFSGDDQPNAHLDVRDIFGEEYAFRAGTVGTVAEKTAYGFV-KGYERDYG----- 1034

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             K  P                        D  VDRL   +    G+ R    H  GIV+ 
Sbjct: 1035 -KFYP------------------------DAEVDRL---AAGAAGVKRTTGQHPGGIVVI 1066

Query: 536  DR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+     DV +    T FN   I++  ++K D LG    T+++K  D   
Sbjct: 1067 PNYMDVYDFTPVQFPADDVTASWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-- 1123

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD +   L +    LG+   E  G    + G+       +  +V+  
Sbjct: 1124 ---SGIDPITIPADDPDVMALFSGTEVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVNET 1179

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYS 706
             P     ++  +   +G +  + +   LI   +   + VI  ++ +M     A L    +
Sbjct: 1180 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMA 1239

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             +  + +R+ +  KI EE   ++  +I    +N +      +  ++      Y F K+HA
Sbjct: 1240 FTIMERVRKGLWLKISEE---ERSSYIKAMRQNNVPDWYIESCGKI-----KYMFPKAHA 1291

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-KIK---------------------- 803
            AAY +++ + A+ K H+P+ +  A  ++     E K                        
Sbjct: 1292 AAYVLMALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLAAVKARMEDISNKRKRNE 1351

Query: 804  ------------KFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +  +   +        +   +F++  + +     A++G+G   A
Sbjct: 1352 ASNVENDLFTTLEIVNEMLERGFKFGKLDLYKSEATEFQIEGDTLIPPFIALEGLGENVA 1411

Query: 851  RHIMEASADKPFDSLEDFCSR 871
            R I++A  D  F S  +   R
Sbjct: 1412 RQIVKARQDGEFLSKMELRKR 1432



 Score = 75.4 bits (184), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  
Sbjct: 334 MPEGQKRVEFHAHTNMSTMDALPTVEDLIDTAARWGHQAVAITDHANVQSFPHGYHRARK 393

Query: 65  AGIQPII 71
            GI+ I 
Sbjct: 394 VGIKAIF 400


>gi|315222325|ref|ZP_07864231.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
 gi|315188658|gb|EFU22367.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
          Length = 1456

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 154/910 (16%), Positives = 316/910 (34%), Gaps = 164/910 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 594  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 651

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRE-- 197
            EGLI+ T  S G +  A        A +    +   ++    +Y  L          E  
Sbjct: 652  EGLILGTACSEGEVFDAVVSQGVDAAVEVAKYYDFIEIMPPAIYAPLIAKEQVKDVEELH 711

Query: 198  ---SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++    + P++AT +  ++  E+    +++         +  +    +  +P 
Sbjct: 712  TIIKNLIEVGNRLDKPVLATGDVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGENAQPA 771

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEI--ARRCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L + L + V I    + +   +    +         D  ++
Sbjct: 772  PLPKAHFRTTNEMLDEFAFLGDELAHKVVIDNPNQLAATFEPIEVVKGDLYTPFIDKSEE 831

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +       KA            I          +R++ EL+ I    F+  +L     +Q
Sbjct: 832  KVAEMTYAKAFE----------IYGNPLPDIVDRRIERELSSILGNGFAVIYLASQMLVQ 881

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 882  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMP 940

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 941  DKDCPHCGYKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAF 1000

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y++  R                              
Sbjct: 1001 RAGTVGTVAAKTAYGFV-KGYERDYNKFYR------------------------------ 1029

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1030 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDLTAEWQTTHFN 1086

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD E   L +    LG
Sbjct: 1087 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNEIPMDDQEVMALFSGTDVLG 1140

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            + Q E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1141 VTQ-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1199

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M       L    + +  + +R+ M  KI +E   ++  +I+ 
Sbjct: 1200 KQGIADLSTVIGCRDDIMVYLMHKGLEPKMAFTIMERVRKGMWLKISDE---ERNGYIAA 1256

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              +N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1257 MKENNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1311

Query: 796  MDNVE-KIK----------------------------------KFCQDARQFNIQIMPPS 820
                + K+                                   +   +  +   +     
Sbjct: 1312 AKAFDIKVMSSGLDAVKRKMNEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFKFGKLD 1371

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +    +A+ G+G   A+ +++A A+  F S  +   R        
Sbjct: 1372 LYKSDATEFLIDGDSLIPPFSAMDGLGDNVAKQLVKARAEGEFLSKTELRKRGGLSTTLV 1431

Query: 880  RVLESLVFAG 889
              ++ +   G
Sbjct: 1432 DKMDEMGILG 1441



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    +    H++ S ++    +  ++   A     A+AITD  N+ S     + A  
Sbjct: 325 MPEGEKRIEFHAHTNMSTMDALPEVEELIATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 384

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I         N+          +V  V T      L  + + +  +  
Sbjct: 385 AGIQLIYGMEANIVEDRVPITYNEVDMELKEATYVVFDVETT----GLSAIYNDLIQVAA 440

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F+    D +
Sbjct: 441 SKMYKGNVIAEFDEFINPGHPLSAFTTDLTGITDEHV--KNAKPLEQVLQEFQDFCQDTV 498

Query: 183 YVN 185
            V 
Sbjct: 499 LVA 501


>gi|327462769|gb|EGF09091.1| DNA polymerase III PolC [Streptococcus sanguinis SK1057]
          Length = 1462

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 157/912 (17%), Positives = 314/912 (34%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEVMPPAIYEPLIAKEQIKDQEELQ 717

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 718  TIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGENAQPA 777

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L   + I    + +   +    +         D  ++
Sbjct: 778  PLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTPFIDKAEE 837

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     +Q
Sbjct: 838  TVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQ 887

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 888  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMP 946

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 947  DKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGAEYAF 1006

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1007 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1035

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1036 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1092

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG
Sbjct: 1093 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNDIPMDDAGVMALFSGTDILG 1146

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            + Q E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1147 VTQ-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1205

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M       L    + +  + +R+ +  KI EE   ++  +I+ 
Sbjct: 1206 KQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEE---ERNGYIAA 1262

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              +N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1263 MKENNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1317

Query: 796  ---------MDNVEKIK--------------------------KFCQDARQFNIQIMPPS 820
                        ++ +K                          +   +  +   +     
Sbjct: 1318 AKAFDIKTMSGGLDAVKRRMNEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFKFGKLD 1377

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F + ++ +    +A+ G+G   AR ++ A  +  F S  +   R     L+ 
Sbjct: 1378 LYKSHATEFLIEEDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR---GGLSS 1434

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1435 TLVEKMDDMGIL 1446



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 331 MPEGQKRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 390

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+          +V  V T      L  + + +  +  
Sbjct: 391 AGIQLIYGMEANIVEDRVPIVYNEVDMELSDATYVVFDVETT----GLSAVYNDLIQVAA 446

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D           E+ L  F++   D +
Sbjct: 447 SKMHKGNIIAEFDEFINPGYPLSAFTTDLTGITDEHVRNAKP--LEQVLKEFQEFCQDSV 504

Query: 183 YVN 185
            V 
Sbjct: 505 LVA 507


>gi|225856031|ref|YP_002737542.1| DNA polymerase III PolC [Streptococcus pneumoniae P1031]
 gi|225725805|gb|ACO21657.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae P1031]
          Length = 1463

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 158/916 (17%), Positives = 314/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNL-----QRHRGYDR 194
            EGLI+ +  S G +  A        A +    +   ++    +Y  L      +     +
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKNLIEIGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPNKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNEIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERND 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 85.0 bits (209), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVERDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGYPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|260589219|ref|ZP_05855132.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
 gi|260540300|gb|EEX20869.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
          Length = 1487

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 161/897 (17%), Positives = 298/897 (33%), Gaps = 174/897 (19%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
                ++L     G   L  L+S  +L+    +  RI  S   +   EGL++ +   +G +
Sbjct: 652  TYHAIILAKNDVGRVNLYHLISDSHLI-YYHRRPRIPKSLFLKY-QEGLLIGSACEAGEL 709

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-----------RYRESQVVQLA 204
             +A      +    RL+ F      +   N       +           +    ++V+L 
Sbjct: 710  YQAVLNGRPEQEIARLVNFYDYLEIQPLGNNAFMLKNEDRSDITSWEDLQEINKKIVKLG 769

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
                 P+V T +  FL  ED     ++MA                   YL+   EM+  F
Sbjct: 770  EAFNKPVVGTCDVHFLDPEDEVYRRIIMAGKGFDDADD------QAPLYLRTTEEMLKEF 823

Query: 265  SDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            S L       + I    + + +++  +PI     + +C  + +  +  LR    +     
Sbjct: 824  SYLGREKAEEIVITNPNKIADMVEKISPIH----KGKCPPVIENSDAMLREICYSKAHEI 879

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
              +         +    RL+ ELN I    ++  ++I    +  +  +   VG  RGS  
Sbjct: 880  YGENL------PEMVEARLERELNSIISNGYAVMYMIAQKLVWKSNSDGYLVG-SRGSVG 932

Query: 383  GSVTAYALTITDIDPLR------------------------------------------- 399
             S  A    IT+++PL                                            
Sbjct: 933  SSFAATMSGITEVNPLSPHYYCAKCHYADFDSEEVRAYSGRAGCDMPDKKCPVCGEPLVK 992

Query: 400  --FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
              F + FE FL       PD D++F  D + +  RYV+  +G  +  +  T G+L  K A
Sbjct: 993  EGFDIPFETFLGFKGDKEPDIDLNFSGDYQGKAHRYVEVIFGAGQTFKAGTIGTLAEKTA 1052

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
               V                                      E R        +  I Q 
Sbjct: 1053 FGYVKNYY----------------------------------EERGQRKRYCEINRIVQG 1078

Query: 518  LEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFD 572
              G+ R    H  GI++      + +  P+     D+ SD+  T F+   I+   L+K D
Sbjct: 1079 CTGVRRTTGQHPGGIIVLPIGWDIEEFTPVQHPANDMNSDIITTHFDYHSIDS-NLLKLD 1137

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
             LG    T+++   D             IP D  E   L      LGI   +  G     
Sbjct: 1138 ILGHDDPTMIRMLEDLTGINAR-----EIPLDSKEVMSLFKNTDALGITPDDIRGCPLGC 1192

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIY 691
             G+     +  + ++    P    ++V  +   +G +  + +   LI          I  
Sbjct: 1193 LGIPEFGTDFAMQMLIDANPTSFSDLVRISGLSHGTDVWLGNAQDLIKSGTATITTCICT 1252

Query: 692  QEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++ +M       L  G + +  + +R+  G K  E +++ K+  +              +
Sbjct: 1253 RDDIMIYLINKGLEHGQAFTIMESVRKGKGLK-PEWIEEMKKHDVP-------------D 1298

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE------------- 795
             +    K   Y F K+HAAAY ++ ++ A+ K  +P+ + AA  ++              
Sbjct: 1299 WYIESCKKIKYMFPKAHAAAYVMMGWRIAYCKIFHPLAYYAAYFSIRATAFSYELMCQGK 1358

Query: 796  --------------------MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNR 834
                                  +  K  +  Q+        +P  +       F++ D +
Sbjct: 1359 EKLEYFMDDYEKRKDTLSKKEQDTYKDMRIVQEMYARGFDFVPIDIYKANAHTFQIIDGK 1418

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +  +L  I+G+G   A  ++ A+ +  F SL+DF +R         ++  L   G L
Sbjct: 1419 LMPALDTIEGLGDRAADAVVAAAEEGNFLSLDDFRNRTKVTSSTIDLMNDLGLFGKL 1475



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
           V L  H+  S ++G      ++ +       AIAITD   + +  E 
Sbjct: 370 VELHCHTKMSDMDGVSDAKALIKRAYEWGHKAIAITDHGVVQAFPEA 416


>gi|125718854|ref|YP_001035987.1| DNA polymerase III PolC [Streptococcus sanguinis SK36]
 gi|166217455|sp|A3CQI2|DPO3_STRSV RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|125498771|gb|ABN45437.1| DNA polymerase III polC-type, putative [Streptococcus sanguinis SK36]
          Length = 1462

 Score =  406 bits (1044), Expect = e-110,   Method: Composition-based stats.
 Identities = 157/912 (17%), Positives = 313/912 (34%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEVMPPAIYEPLIAKEQIKDQEELQ 717

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 718  TIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGENAQPA 777

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L   + I    + +   +    +         D  ++
Sbjct: 778  PLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTPFIDKAEE 837

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     +Q
Sbjct: 838  TVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQ 887

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 888  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMP 946

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 947  DKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGSEYAF 1006

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1007 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1035

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1036 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1092

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG
Sbjct: 1093 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNDIPMDDAGVMALFSGTDILG 1146

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            + Q E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1147 VTQ-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1205

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M       L    + +  + +R+ +  KI EE   ++  +I+ 
Sbjct: 1206 KQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEE---ERNGYIAA 1262

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              +N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1263 MKENNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1317

Query: 796  ---------MDNVEKIK--------------------------KFCQDARQFNIQIMPPS 820
                        ++ +K                          +   +  +   +     
Sbjct: 1318 AKAFDIKTMSGGLDAVKRRMSEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFKFGKLD 1377

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +    +A+ G+G   AR ++ A  +  F S  +   R     L+ 
Sbjct: 1378 LYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR---GGLSS 1434

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1435 TLVEKMDDMGIL 1446



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 331 MPEGQKRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 390

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+          +V  V T      L  + + +  +  
Sbjct: 391 AGIQLIYGMEANIVEDRVPIVYNEVDMELSDATYVVFDVETT----GLSAVYNDLIQVAA 446

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D           E+ L  F++   D +
Sbjct: 447 SKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKP--LEQVLKEFQEFCQDSV 504

Query: 183 YVN 185
            V 
Sbjct: 505 LVA 507


>gi|296329433|ref|ZP_06871922.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum
            ATCC 23726]
 gi|296153442|gb|EFG94272.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum
            ATCC 23726]
          Length = 1454

 Score =  406 bits (1043), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/950 (17%), Positives = 328/950 (34%), Gaps = 185/950 (19%)

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            N+F  + F  K    G++ +    +  ++               ++ +I++LV T +G +
Sbjct: 581  NMF--IIFLDKYKEKGLEYMKDINVGFEVN----------VKKQSLKNIMVLVKTQDGLK 628

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----GPIDRAFFFNSSQ 165
             +  LVS  ++   G +  RI  S L E   EGLI+ +  ++     G +   +  +  +
Sbjct: 629  NMYRLVSEAHIKYFGNKKARIPKSVLTE-NREGLIIGSSLTAHFMNIGELADLYLRHDLE 687

Query: 166  VAEKRLLTFK--KLFGDRLYVNLQRHRG--------YDRYRESQVVQLAYTHELPLVATN 215
              E+    +   +L     Y  L    G                   L     + + A++
Sbjct: 688  KLEEAAKFYDYIELLPKSTYNELIEKDGTGALGSYEEVEKMNKYFYDLGKRLGILVTASS 747

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ 269
            N  +L E +     +L+  +    V    +  +    Y +   EM+  FS L +      
Sbjct: 748  NVHYLDENEDIIRSILLYGSG--TVYNSRQYSINNGFYFRTTDEMLQEFSYLGDEKAKEV 805

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
             + NT +IA      +    PI   F   + ++ ++        KA      R+    + 
Sbjct: 806  VITNTNKIADMIESGI---KPIPEGFYPPKMENAEEIVRTMTYEKAY-----RIYGDPL- 856

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                      RL+ ELN I    FS  +L     ++ +  N   VG  RGS   S+ A+ 
Sbjct: 857  ----PNIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGSSLVAFM 911

Query: 390  LTITDIDPL-----------------------------------------RFSLLFERFL 408
            + IT+++ L                                          +S+ FE F+
Sbjct: 912  MGITEVNALYPHYICDNSECKYSEFIEREGVGIDLPDKICPKCGAKLRKDGYSIPFEVFM 971

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
                  +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V +     
Sbjct: 972  GFKGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVRKYF--- 1028

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
                                           E    +     ++ + +  +G  +    H
Sbjct: 1029 -------------------------------EDNNLNAVRAEIIRLGRLCQGAKKTTGQH 1057

Query: 529  AAGIVIGD--RPLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
              G+VI      + +  P+ R    +      T ++   +++  L+K D LG    T ++
Sbjct: 1058 PGGMVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDEQ-LVKLDILGHDDPTTIK 1116

Query: 584  KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
                 L Q    +++  IP  D +T  + ++  +LG+   E  G      G+       +
Sbjct: 1117 -----LLQEYTNIEIKDIPLADKDTLKIFSSTESLGVTP-EQIGTEIGTYGIPEFGTGFV 1170

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
              ++   RP     +V  +   +G    ++     +         +I  ++ +M      
Sbjct: 1171 RQMLIDTRPTTFAELVRISGLSHGTNVWLNNAQEFVRNGQATLSQIITVRDDIMNYLIDQ 1230

Query: 703  S---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
                  S    + +R+   KK  E  +K             + +    + +    +  +Y
Sbjct: 1231 GLDNSDSFKIMEFVRKGKPKKEPENWEKYSAM---------MKEKNVPDWYIESCRRIEY 1281

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------KIKKF-- 805
             F K HA AY +++ + A+ K H P+ F AA ++ + D+ +            K+++   
Sbjct: 1282 MFPKGHAVAYVMMAMRIAYFKVHQPLAFYAAFLSRKADDFDMEVMSRGILAKQKLEELSK 1341

Query: 806  -----------------CQDARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGT 847
                               +     ++++P  +       F + D +I   L  I G+G 
Sbjct: 1342 EPKLDPKKKNEQAICEIVVELEARGLKLLPVDIYLSDGKKFTIEDGKIRIPLIGINGLGG 1401

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
                 I++   +  F S+ED   R   ++     L+++   GA+     +
Sbjct: 1402 AVIDAIVKEREEGKFISVEDLKRRTKIQQPVVDKLKNI---GAISSLSET 1448



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L  H+  S + G   + +I+ +       AIAITD + + S     + A         
Sbjct: 336 VELHAHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYSVVHSYPAAFKTAKKFSTDEEK 395

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           ++ I GC++ +   +   +TN           +V  + T
Sbjct: 396 MKAIFGCEMYMIDDEAPMVTNPKDKKIDDEEFVVFDIET 434


>gi|225871273|ref|YP_002747220.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047]
 gi|225700677|emb|CAW95265.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047]
          Length = 1465

 Score =  406 bits (1043), Expect = e-110,   Method: Composition-based stats.
 Identities = 164/921 (17%), Positives = 319/921 (34%), Gaps = 181/921 (19%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F ++A    GI  ++          N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKEAREKHGITNLLQL--------NTDLVAEDSYKKARIKHATIYVQNQLGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNVK-YFEGVPRIPRTVLDQ-HREGLLLGTACSDGEVFDAVLTQGIDAAVDLAKYYDF 695

Query: 176  ------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                   ++   +   L + +         ++++    E P++AT N  ++  ED    D
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGVEQIIRDLIEVGRRAEKPVLATGNVHYIEPEDAIYRD 755

Query: 230  VLMA-------VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE------NTVE 276
            +++        +  +    +  +P   P+ + +  +EM+  F+ L + L       NT  
Sbjct: 756  IIVRSLGQGALINRTIGRGEAAKPVPLPEAHFRTTNEMLDDFAFLGQDLAYEVVVQNTQA 815

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            +A R   +  V   +   +I+K  + +   E    +  A+ G                  
Sbjct: 816  LADRIEKVEVVKDDLYTPYIDKAEETVA--ELTYQKAFAIYG------------NPLPDI 861

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++
Sbjct: 862  IDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVN 920

Query: 397  PLRF-----------------------------------------SLLFERFLNPDRMSM 415
            P+                                            + FE FL  D   +
Sbjct: 921  PMPPHYVCPSCQQSEFITDGSVGSGYDLPNKACPRCGTLYKKDGQDIPFETFLGFDGDKV 980

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D +      V++ +G E   +  T G++  K A   V +  +  Y      
Sbjct: 981  PDIDLNFSGDDQPNAHLDVRDIFGEEYAFRAGTVGTVAEKTAYGFV-KGYERDYG----- 1034

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             K  P                        D  VDRL   +    G+ R    H  GIV+ 
Sbjct: 1035 -KFYP------------------------DAEVDRL---AAGAAGVKRTTGQHPGGIVVI 1066

Query: 536  DR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+     DV +    T FN   I++  ++K D LG    T+++K  D   
Sbjct: 1067 PNYMDVYDFTPVQFPADDVTASWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-- 1123

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD +   L +    LG+   E  G    + G+       +  +V+  
Sbjct: 1124 ---SGIDPITIPADDPDVMALFSGTEVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVNET 1179

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYS 706
             P     ++  +   +G +  + +   LI   +   + VI  ++ +M     A L    +
Sbjct: 1180 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMA 1239

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             +  + +R+ +  KI EE   ++  +I    +N +      +  ++      Y F K+HA
Sbjct: 1240 FTIMERVRKGLWLKISEE---ERSSYIKAMRQNNVPDWYIESCGKI-----KYMFPKAHA 1291

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-KIK---------------------- 803
            AAY +++ + A+ K H+P+ +  A  ++     E K                        
Sbjct: 1292 AAYVLMALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLAAVKARMEDISNKRKRNE 1351

Query: 804  ------------KFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +  +   +        +   +F++  + +     A++G+G   A
Sbjct: 1352 ASNVENDLFTTLEIVNEMLERGFKFGKLDLYKSEATEFQIEGDTLIPPFIALEGLGENVA 1411

Query: 851  RHIMEASADKPFDSLEDFCSR 871
            R I++A  D  F S  +   R
Sbjct: 1412 RQIVKARQDGEFLSKMELRKR 1432



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  
Sbjct: 334 MPEGQKRVEFHAHTNMSTMDALPTVEDLIDTAARWGHQAVAITDHANVQSFPHGYHRARK 393

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 394 AGIKAIF 400


>gi|325695495|gb|EGD37395.1| DNA polymerase III PolC [Streptococcus sanguinis SK150]
          Length = 1462

 Score =  406 bits (1043), Expect = e-110,   Method: Composition-based stats.
 Identities = 157/912 (17%), Positives = 313/912 (34%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEVMPPAIYEPLIAKEQIKDQEELQ 717

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 718  TIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGENAQPA 777

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L   + I    + +   +    +         D  ++
Sbjct: 778  PLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTPFIDKAEE 837

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     +Q
Sbjct: 838  TVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQ 887

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 888  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMP 946

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 947  DKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGSEYAF 1006

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1007 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1035

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1036 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1092

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG
Sbjct: 1093 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNDIPMDDAGVMALFSGTDILG 1146

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            + Q E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1147 VTQ-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1205

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M       L    + +  + +R+ +  KI EE   ++  +I+ 
Sbjct: 1206 KQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEE---ERNGYIAA 1262

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              +N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1263 MKENNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1317

Query: 796  ---------MDNVEKIK--------------------------KFCQDARQFNIQIMPPS 820
                        ++ +K                          +   +  +   +     
Sbjct: 1318 AKAFDIKTMSGGLDAVKRRMSEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFKFGKLD 1377

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +    +A+ G+G   AR ++ A  +  F S  +   R     L+ 
Sbjct: 1378 LYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR---GGLSS 1434

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1435 TLVEKMDDMGIL 1446



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 63/183 (34%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 331 MPEGQKRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 390

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I   + +I       + N+          +V  V T      L  + + +  +  
Sbjct: 391 AGIQLIYSMEANIVEDRVPIVYNEVDMELSDATYVVFDVETT----GLSAVYNDLIQVAA 446

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D           E+ L  F++   D +
Sbjct: 447 SKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKP--LEQVLKEFQEFCQDSV 504

Query: 183 YVN 185
            V 
Sbjct: 505 LVA 507


>gi|293364694|ref|ZP_06611411.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037]
 gi|307702942|ref|ZP_07639889.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            oralis ATCC 35037]
 gi|291316144|gb|EFE56580.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037]
 gi|307623335|gb|EFO02325.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            oralis ATCC 35037]
          Length = 1463

 Score =  406 bits (1043), Expect = e-110,   Method: Composition-based stats.
 Identities = 161/916 (17%), Positives = 315/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPNKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNEIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ M  KI EE   +++ 
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGMWLKISEE---ERDG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLDAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRARQEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|289167137|ref|YP_003445404.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6]
 gi|288906702|emb|CBJ21536.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6]
          Length = 1463

 Score =  406 bits (1043), Expect = e-110,   Method: Composition-based stats.
 Identities = 155/912 (16%), Positives = 307/912 (33%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NVDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDAVLSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALEN--TVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L     +E     +   +    +         D  ++
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENPNALAETFEPVEVVKGDLYTPFIDKAEE 838

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     +Q
Sbjct: 839  TVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQ 888

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 889  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMP 947

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 948  NKDCPKCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAF 1007

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1008 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1036

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1037 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1093

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG
Sbjct: 1094 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNEIPMDDEGVMALFSGTDVLG 1147

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            +   E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1148 VTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1206

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I  
Sbjct: 1207 KQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEA 1263

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
               N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1264 MKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1318

Query: 796  MDNVE-KIK----------------------------------KFCQDARQFNIQIMPPS 820
                + K                                    +   +  +   +     
Sbjct: 1319 AKAFDIKTMGAGLDAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKFGKLD 1378

Query: 821  VNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R     L+ 
Sbjct: 1379 LYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---GGLSS 1435

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1436 TLVEKMDEMGIL 1447



 Score = 85.0 bits (209), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEKDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNIVAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|325697436|gb|EGD39322.1| DNA polymerase III PolC [Streptococcus sanguinis SK160]
          Length = 1462

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 157/912 (17%), Positives = 314/912 (34%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEVMPPAIYEPLIAKEQIKDQEELQ 717

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 718  TIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGENAQPA 777

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L   + I    + +   +    +         +  ++
Sbjct: 778  PLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKSDLYTPFIEKAEE 837

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     +Q
Sbjct: 838  TVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQ 887

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 888  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMP 946

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 947  DKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGAEYAF 1006

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1007 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1035

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1036 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1092

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG
Sbjct: 1093 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNDIPMDDAGVMALFSGTDILG 1146

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            + Q E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1147 VTQ-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1205

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M       L    + +  + +R+ +  KI EE   ++  +I+ 
Sbjct: 1206 KQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEE---ERNGYIAA 1262

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              KN + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1263 MKKNNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1317

Query: 796  ---------MDNVEKIK--------------------------KFCQDARQFNIQIMPPS 820
                        ++ +K                          +   +  +   +     
Sbjct: 1318 AKAFDIKTMSGGLDAVKRRMNEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFKFGKLD 1377

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F + ++ +    +A+ G+G   AR ++ A  +  F S  +   R     L+ 
Sbjct: 1378 LYKSHATEFLIEEDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR---GGLSS 1434

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1435 TLVEKMDDMGIL 1446



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 331 MPEGQKRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 390

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+          +V  V T      L  + + +  +  
Sbjct: 391 AGIQLIYGMEANIVEDRVPIVYNEVDMELSDATYVVFDVETT----GLSAVYNDLIQVAA 446

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D           E+ L  F++   D +
Sbjct: 447 SKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKP--LEQVLKEFQEFCQDSV 504

Query: 183 YVN 185
            V 
Sbjct: 505 LVA 507


>gi|323350531|ref|ZP_08086193.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66]
 gi|322123213|gb|EFX94898.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66]
          Length = 1462

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 156/912 (17%), Positives = 314/912 (34%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEVMPPAIYEPLIAKEQIKDQEELQ 717

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 718  TIIRNLIEVGNRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGENAQPA 777

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L   + I    + +   +    +         +  ++
Sbjct: 778  PLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTPFIEKAEE 837

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     +Q
Sbjct: 838  TVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQ 887

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 888  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMP 946

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 947  DKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGSEYAF 1006

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1007 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1035

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1036 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1092

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG
Sbjct: 1093 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNDIPMDDAGVMALFSGTDILG 1146

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            + Q E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1147 VTQ-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1205

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M       L    + +  + +R+ +  KI EE   ++  +I+ 
Sbjct: 1206 KQGIADLSTVIGCRDDIMVYLMHKGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIAA 1262

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              +N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1263 MKENNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1317

Query: 796  ---------MDNVEKIK--------------------------KFCQDARQFNIQIMPPS 820
                        ++ +K                          +   +  +   +     
Sbjct: 1318 AKAFDIKTMSGGLDAVKRGMNEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFKFGKLD 1377

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F + ++ +    +A+ G+G   AR ++ A  +  F S  +   R     L+ 
Sbjct: 1378 LYKSHATEFLIEEDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR---GGLSS 1434

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1435 TLVEKMDDMGIL 1446



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 331 MPEGQKRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 390

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+          +V  V T      L  + + +  +  
Sbjct: 391 AGIQLIYGMEANIVEDRVPIVYNEVDMELSDATYVVFDVETT----GLSAVYNDLIQVAA 446

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D           E+ L  F++   D +
Sbjct: 447 SKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKP--LEQVLKEFQEFCQDSV 504

Query: 183 YVN 185
            V 
Sbjct: 505 LVA 507


>gi|324989747|gb|EGC21690.1| DNA polymerase III PolC [Streptococcus sanguinis SK353]
          Length = 1462

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 157/912 (17%), Positives = 313/912 (34%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEVMPPAIYEPLIAKEQIKDQEELQ 717

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 718  TIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGENAQPA 777

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L   + I    + +   +    +         D  ++
Sbjct: 778  PLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTPFIDKAEE 837

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     +Q
Sbjct: 838  TVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQ 887

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 888  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMP 946

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 947  DKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGAEYAF 1006

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1007 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1035

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1036 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1092

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG
Sbjct: 1093 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNDIPMDDSGVMALFSGTDILG 1146

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            + Q E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1147 VTQ-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1205

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M       L    + +  + +R+ +  KI EE   ++  +I+ 
Sbjct: 1206 KQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEE---ERNGYIAA 1262

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              +N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1263 MKENNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1317

Query: 796  ---------MDNVEKIK--------------------------KFCQDARQFNIQIMPPS 820
                        ++ +K                          +   +  +   +     
Sbjct: 1318 AKAFDIKTMSGGLDAVKRRMNEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFKFGKLD 1377

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +    +A+ G+G   AR ++ A  +  F S  +   R     L+ 
Sbjct: 1378 LYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR---GGLSS 1434

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1435 TLVEKMDDMGIL 1446



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 331 MPEGQKRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 390

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+          +V  V T      L  + + +  +  
Sbjct: 391 AGIQLIYGMEANIVEDRVPIVYNEVDMELSDATYVVFDVETT----GLSAVYNDLIQVAA 446

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D           E+ L  F++   D +
Sbjct: 447 SKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKP--LEQVLKEFQEFCQDSV 504

Query: 183 YVN 185
            V 
Sbjct: 505 LVA 507


>gi|285808454|gb|ADC35979.1| error-prone DNA polymerase [uncultured bacterium 148]
          Length = 1642

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 155/583 (26%), Positives = 257/583 (44%), Gaps = 63/583 (10%)

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
             +R LE   +++G  RH S H+ G+++   PL  + P+ R    D  V QF+ + +E   
Sbjct: 999  WERWLEFCARIDGFPRHLSIHSGGMLVTAAPLIDIAPIERATMVDRVVVQFDKRDVETLK 1058

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            LIK D LGL  L  + ++L  +     V +DL  +P D  E + +L T  T+G+FQ+ES 
Sbjct: 1059 LIKLDLLGLGMLAAMDETLQLIEHDCGVCLDLDRLPEDVSEVFAMLQTADTVGVFQVESR 1118

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE 684
               Q L   +P  ++D++  V++ RPGPI    +  Y  RK G E +  +HP ++P+LK+
Sbjct: 1119 AQMQTLPKSRPHNLDDLVVEVAIIRPGPIQGNAVHPYLRRKQGLEPVEYLHPSLEPVLKD 1178

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISG-ASKNGIS 742
            + GVI+YQEQVM+IA  ++G+S +E+D  RRAMG      EM+K  +RF+ G   + G++
Sbjct: 1179 SMGVILYQEQVMRIAIEVAGFSPAESDGFRRAMGTWRSSREMEKLHQRFVDGAMRQPGMT 1238

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              +A  +F  +A FA +GF KSHAAA+A  +Y+++++K  YP +FL   +  +      +
Sbjct: 1239 IEVAEELFRQVAAFASFGFAKSHAAAFARTAYESSFLKLFYPAQFLVGLINAQPMGFYPV 1298

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGD------------------------------ 832
            +    DA++  + ++P  VN                                        
Sbjct: 1299 EVLVNDAKRHGVAVLPADVNGSSYKTTTEWVGRPGEPLPPGSGITERPEPVLSSACVVPS 1358

Query: 833  --------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                            +   L  +KG+G      +       P+ SL D   R D     
Sbjct: 1359 PEARDRWTPEVTVGWGVRLGLHLVKGIGEQHEALLDAERDRGPYRSLVDVVERTDL---P 1415

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT--------NKHENIFAHE 930
              VLE L+ +GA+D  G  R +LL  L  +   ++     RT         K        
Sbjct: 1416 EEVLERLIRSGAMDSLGRPRRELLWQLREVAGASRGRMDGRTVRGLGRAAGKRGAAAGRP 1475

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
                              S R  +   VLG       + +++P L ++G           
Sbjct: 1476 MDLRLPATDAPALPPITESERIGDAYAVLGVDARRQVVGLFRPALDRLGAVTNGALADRR 1535

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G  +R+  +VV++Q   T KG+   ++   +         +P
Sbjct: 1536 SG-PVRVGGLVVTRQHPMTAKGT--VFLALEDETGMVNVTMWP 1575



 Score =  361 bits (926), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 148/538 (27%), Positives = 225/538 (41%), Gaps = 79/538 (14%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            ++P +  L  H+++S L+GA + + ++++        +A TD N L+ ++ F+  A  A
Sbjct: 5   SRTP-YAELHAHTNFSFLDGASAPDELVERAVELGLTGLAATDHNGLYGSVRFTTAAEDA 63

Query: 66  GI-----------------------------------------------------QPIIG 72
           G+                                                     +P   
Sbjct: 64  GLHSVIGAEIELLDPAVGDPAGTVIPPRRARRRGRAAAATADPGVELAVDDGRPTRPRPD 123

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                  +D +K   +G       P ++LL  +  G++ L  L+SR  +    K   R  
Sbjct: 124 RARLPGHRDPVKEDFRGIGARARGPRLILLARSQIGWRSLCRLMSRANMAG-TKAVPRFR 182

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRHR- 190
            + L E   E +I L+GG SG I R         A          FGD    + L  H  
Sbjct: 183 HALLDE-HHEDVIALSGGRSGEIGRRLLVGDRAGARAAAERLAARFGDGGFAIELGHHLL 241

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVT 249
             D +  ++   LA    LP+V TN   +   ED E HDVL A+ H   +    D  R+ 
Sbjct: 242 PDDDWLVTESAALAADLRLPVVVTNAVHYARPEDRELHDVLTAIKHGRTLDTLADLRRID 301

Query: 250 PDHYLKNRSEMVSIFSD--------LPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            + YLK+  E+ ++ +           E +E +V IA  CS  L       P F   + +
Sbjct: 302 GESYLKSGDELAALGAALDGAAARAWHEGIERSVAIAASCSVDLGFEQYRFPGFPVPDGE 361

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                  + L     AG   R      A          RL  EL VI R   + +FLI  
Sbjct: 362 ----TPFSYLSELCWAGARRRYHPLTSA-------VVTRLAHELGVIERAGLAEFFLICW 410

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D + +AK   IP   GRGS AGS+  Y L I+ ++P+R  LLFERF+N  R + PD DID
Sbjct: 411 DLMVFAKGRGIP-AQGRGSAAGSIVTYVLGISRVEPIRHDLLFERFINEGRTTYPDVDID 469

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           F  +RR+EVI+YV  +YG E    +    + +A++A+R+VG AL  P   VDR+ K +
Sbjct: 470 FSSERREEVIQYVYERYGAEHTGMVCNLVTYRARSAVREVGYALGFPRPLVDRVAKAL 527


>gi|322377559|ref|ZP_08052049.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. M334]
 gi|321281324|gb|EFX58334.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. M334]
          Length = 1463

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/916 (17%), Positives = 317/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM------AVAHSTV-VSQKDRPR 247
                 ++++      P++AT N  ++  E+    ++++      A+ + T+   +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAIINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     I  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPIEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +  + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVHRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPNKDCPNCGYKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SSIDPNEIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLDAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|307709855|ref|ZP_07646304.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis SK564]
 gi|307619404|gb|EFN98531.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis SK564]
          Length = 1463

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 160/916 (17%), Positives = 317/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        + + RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQIGLKNIFKLVSLSNTK-YFEGAPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  + G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACAEGEVFDAVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEDLARKLVIENTNALAETFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFIIDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPNKDCPKCSHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNEIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLE---------MDNVEKIK--------------------------KFCQDARQFNIQI 816
             ++             ++ IK                          +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGGGLDAIKRRMEEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRARQEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEDERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|56808719|ref|ZP_00366439.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
            [Streptococcus pyogenes M49 591]
 gi|209560099|ref|YP_002286571.1| DNA polymerase III PolC [Streptococcus pyogenes NZ131]
 gi|209541300|gb|ACI61876.1| DNA polymerase III alpha subunit [Streptococcus pyogenes NZ131]
          Length = 1465

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 160/941 (17%), Positives = 324/941 (34%), Gaps = 184/941 (19%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+ ++          N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKDAREKHGIKNLLQL--------NTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDF 695

Query: 176  -KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y       L + +         ++++    + P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAVYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYRE 755

Query: 230  VL-------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVE 276
            ++         +  +    +  +P   P  + +  +EM+  F+ L +       +ENT +
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVENTQD 815

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
             A R   +  V   +   +I+K  + + +        KA            I        
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELT----YQKAFE----------IYGNPLPDI 861

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++
Sbjct: 862  IDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVN 920

Query: 397  PLRF-----------------------------------------SLLFERFLNPDRMSM 415
            P+                                            + FE FL  D   +
Sbjct: 921  PMPPHYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKV 980

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R 
Sbjct: 981  PDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYR- 1038

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                         D  VDRL   +    G+ R    H  GIV+ 
Sbjct: 1039 -----------------------------DAEVDRL---AAGAAGVKRTTGQHPGGIVVI 1066

Query: 536  DR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+             T FN   I++  ++K D LG    T+++K  D   
Sbjct: 1067 PNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDL-- 1123

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD     L +    LG+   E  G    + G+       +  +V+  
Sbjct: 1124 ---SGIDPITIPADDPGVMALFSGTEILGVTP-EQIGTPTGMLGIPEFGTNFVRGMVNET 1179

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYS 706
             P     ++  +   +G +  + +   LI   +   + VI  ++ +M     A L    +
Sbjct: 1180 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMA 1239

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             +  + +R+ +  KI EE   ++  +I    +N +      +  ++      Y F K+HA
Sbjct: 1240 FTIMERVRKGLWLKISEE---ERNGYIDAMRENNVPDWYIESCGKI-----KYMFPKAHA 1291

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIK-------------- 803
            AAY +++ + A+ K H+P+ +  A  ++             ++ +K              
Sbjct: 1292 AAYVLMALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNE 1351

Query: 804  ------------KFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +  +   +        +  ++F++  + +     A++G+G   A
Sbjct: 1352 ATNVENDLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVA 1411

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + I++A  +  F S  +   R      +  ++E +   G L
Sbjct: 1412 KQIVKARQEGEFLSKMELRKR---GGASSTLVEKMDEMGIL 1449



 Score = 77.7 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V L  H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  
Sbjct: 334 MPEGQKRVELHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARK 393

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 394 AGIKAIF 400


>gi|213418464|ref|ZP_03351530.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 391

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 160/407 (39%), Positives = 230/407 (56%), Gaps = 21/407 (5%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K A+   PA+AITD  NL   ++F      AGI+PI+G   ++  + 
Sbjct: 1   MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNE- 59

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                         +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 60  ---------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSE 259
           V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RP   +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +FSD+PEALENTVEIA+RC+  +++    LP+F   +        E+ L  K+  GL
Sbjct: 230 MCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDYLVKKSKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 391


>gi|323126468|gb|ADX23765.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
            equisimilis ATCC 12394]
          Length = 1465

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 157/941 (16%), Positives = 320/941 (34%), Gaps = 184/941 (19%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+ ++          N  +  +       +    + V    G + + +LV
Sbjct: 586  FLRDAREKHGIKNLLQL--------NTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDF 695

Query: 176  ------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                   ++   +   L + +         ++++    + P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYRE 755

Query: 230  VL-------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE------NTVE 276
            ++         +  +    +  +P   P  + +  +EM+  F+ L + L       NT +
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVQNTQD 815

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            +A R   +  V   +   +I+K  + + +        KA            I        
Sbjct: 816  MADRIEEVEVVKGDLYTPYIDKAEETVAELT----YQKAFE----------IYGNPLPDI 861

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++
Sbjct: 862  IDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVN 920

Query: 397  PLRF-----------------------------------------SLLFERFLNPDRMSM 415
            P+                                            + FE FL  D   +
Sbjct: 921  PMPPHYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKV 980

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R 
Sbjct: 981  PDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYR- 1038

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                         D  VDRL   +    G+ R    H  GIV+ 
Sbjct: 1039 -----------------------------DAEVDRL---AAGAAGVKRTTGQHPGGIVVI 1066

Query: 536  DR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+             T FN   I++  ++K D LG    T+++K  D   
Sbjct: 1067 PNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDL-- 1123

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD     L +    LG+   E  G    + G+       +  +V+  
Sbjct: 1124 ---SGIDPITIPADDPGVMALFSGTEVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVNET 1179

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYS 706
             P     ++  +   +G +  + +   LI   +   + VI  ++ +M            +
Sbjct: 1180 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLQPKMA 1239

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             +  + +R+ +  KI EE   ++  +I    +N +      +  ++      Y F K+HA
Sbjct: 1240 FTIMERVRKGLWLKISEE---ERNGYIDAMRENNVPDWYIESCGKI-----KYMFPKAHA 1291

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIK-------------- 803
            AAY +++ + A+ K H+P+ +  A  ++             ++ +K              
Sbjct: 1292 AAYVLMALRVAYFKVHHPLMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDISIKRKNNE 1351

Query: 804  ------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +  +   +     +      +F++  + +     A++G+G   A
Sbjct: 1352 ATNVENDLFTTLEIVNEMLERGFKFGKLDLYKSKATEFQIEGDTLIPPFVALEGLGENVA 1411

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + I++A  +  F S  +   R      +  ++E +   G L
Sbjct: 1412 KQIVKARQEGEFLSKMELRKR---GGASSTLVEKMDDMGIL 1449



 Score = 75.0 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  
Sbjct: 334 MPEGQKRVEFHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARK 393

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 394 AGIKAIF 400


>gi|139474447|ref|YP_001129163.1| DNA polymerase III PolC [Streptococcus pyogenes str. Manfredo]
 gi|166217453|sp|A2RGI3|DPO3_STRPG RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|134272694|emb|CAM30965.1| DNA polymerase III PolC-type [Streptococcus pyogenes str. Manfredo]
          Length = 1465

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 160/941 (17%), Positives = 323/941 (34%), Gaps = 184/941 (19%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+ ++          N  +  +       +    + V    G + + +LV
Sbjct: 586  FLRDAREKHGIKNLLQL--------NTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDF 695

Query: 176  ------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                   ++   +   L + +         ++++      P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYRE 755

Query: 230  VL-------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVE 276
            ++         +  +    +  +P   P  + +  +EM+  F+ L +       +ENT +
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVENTQD 815

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
             A R   +  V   +   +I+K  + + +        KA            I        
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELT----YQKAFE----------IYGNPLPDI 861

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++
Sbjct: 862  IDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVN 920

Query: 397  PLRF-----------------------------------------SLLFERFLNPDRMSM 415
            P+                                            + FE FL  D   +
Sbjct: 921  PMPPHYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKV 980

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R 
Sbjct: 981  PDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYR- 1038

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                         D  VDRL   +    G+ R    H  GIV+ 
Sbjct: 1039 -----------------------------DAEVDRL---AAGAAGVKRTTGQHPGGIVVI 1066

Query: 536  DR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+             T FN   I++  ++K D LG    T+++K  D   
Sbjct: 1067 PNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG 1125

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD     L +    LG+   E  G    + G+       +  +V+  
Sbjct: 1126 -----IDPITIPADDPGVMALFSGTEILGVTP-EQIGTPTGMLGIPEFGTNFVRGMVNET 1179

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYS 706
             P     ++  +   +G +  + +   LI   +   + VI  ++ +M     A L    +
Sbjct: 1180 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGVATLKTVIGCRDDIMVYLMHAGLEPKMA 1239

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             +  + +R+ +  KI EE   ++  +I    +N +      +  ++      Y F K+HA
Sbjct: 1240 FTIMERVRKGLWLKISEE---ERNGYIDAMRENNVPDWYIESCGKI-----KYMFPKAHA 1291

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIK-------------- 803
            AAY +++ + A+ K H+P+ +  A  ++           D ++ +K              
Sbjct: 1292 AAYVLMALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSDGLDAVKARMEDITIKRKNNE 1351

Query: 804  ------------KFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +  +   +        +  ++F++  + +     A++G+G   A
Sbjct: 1352 ATNVENDLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVA 1411

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + I++A  +  F S  +   R      +  ++E +   G L
Sbjct: 1412 KQIVKARQEGEFLSKMELRKR---GGASSTLVEKMDEMGIL 1449



 Score = 77.7 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V L  H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  
Sbjct: 334 MPEGQKRVELHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARK 393

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 394 AGIKAIF 400


>gi|327390689|gb|EGE89029.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae GA04375]
          Length = 1463

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 156/912 (17%), Positives = 308/912 (33%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALEN--TVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L     +E     + I +    +         D  ++
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENPNALADIFEPVEVVKGDLYTPFIDKAEE 838

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     +Q
Sbjct: 839  TVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQ 888

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 889  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMP 947

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 948  NKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAF 1007

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1008 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1036

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1037 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1093

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG
Sbjct: 1094 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNEIPMDDEGVMALFSGTDVLG 1147

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            +   E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1148 VTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1206

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I  
Sbjct: 1207 KQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEA 1263

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
               N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1264 MKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1318

Query: 796  MDNVE-KIK----------------------------------KFCQDARQFNIQIMPPS 820
                + K                                    +   +  +   +     
Sbjct: 1319 AKAFDIKTMGAGLDAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKFGKLD 1378

Query: 821  VNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R     L+ 
Sbjct: 1379 LYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---GGLSS 1435

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1436 TLVEKMDEMGIL 1447



 Score = 85.0 bits (209), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEIEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGYPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|163783833|ref|ZP_02178814.1| branched-chain alpha-keto acid dehydrogenase E2 subunit
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880904|gb|EDP74427.1| branched-chain alpha-keto acid dehydrogenase E2 subunit
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 352

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 160/350 (45%), Positives = 231/350 (66%), Gaps = 7/350 (2%)

Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
           + +E+++I +M F  YFLIV DFI+ AK+N IPVGPGRGS AGS+ AY L ITD++PL+ 
Sbjct: 1   MKYEIDIIKQMGFPEYFLIVQDFIKHAKENGIPVGPGRGSAAGSLVAYTLGITDVNPLQH 60

Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            L+FERFLNPDR+SMPD DIDFC + R ++I YV+NKYG + VAQIIT+  +++K  +RD
Sbjct: 61  GLIFERFLNPDRISMPDIDIDFCMENRPKIIEYVRNKYGEQAVAQIITYNFMKSKMVIRD 120

Query: 461 VGRALQMPYSQVDRLCKLIPNDPAHPVSL---QAIADDSRFREARLADPSVDRLLEISQK 517
           V R L  PYS+ D++ K+I   P    +L   + +  +  FR+    D  V +LL++++K
Sbjct: 121 VARVLGFPYSEADKIAKMILPGPVQGSTLTIEENLEANPEFRKLYETDERVRKLLDLAKK 180

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
           LEG  RH   HAAGIVI   PL + VP+Y D +     TQF+M  +E  GL+K DFLGLK
Sbjct: 181 LEGSARHTGIHAAGIVIAPGPLDEYVPVYVD-KDGTKATQFDMSTLEMLGLVKMDFLGLK 239

Query: 578 TLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
           TLT L      + +R  + ++   + FDD   Y LL +  T G+FQLES GM+  L  ++
Sbjct: 240 TLTELDYMRKLIKERHGIDLNFLELGFDDPNVYKLLQSGKTTGVFQLESKGMQNLLAKLK 299

Query: 637 PDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE 684
           PD  ++IIA+++L+RPGP+ + +V  Y  RK+G++K+      +  +LK+
Sbjct: 300 PDKFDEIIAILALFRPGPLMSGMVDEYIERKHGRKKVEYPFEEVKDVLKK 349


>gi|257466340|ref|ZP_05630651.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
            25563]
 gi|315917497|ref|ZP_07913737.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
            25563]
 gi|313691372|gb|EFS28207.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
            25563]
          Length = 1450

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 175/980 (17%), Positives = 346/980 (35%), Gaps = 189/980 (19%)

Query: 18   SSY--SLLEGALSLNNILDKIAADQQP------AIAITDTNNLFSALEFSQKACAAGIQP 69
            S +  S ++      ++  ++             +++ + +             A G   
Sbjct: 527  SDFNPSFIDTLQMAKDLYPELKQFGLGPLNKKLGLSLENHH------RAVDDCQATGNMF 580

Query: 70   IIGCQLDIDMQDNLKMTNQGKTP----FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            +I     +D   +     QG  P         +++LLV    G + L  LVS  +L   G
Sbjct: 581  LIFLDKYLDQGIHKLSEMQGAFPVNTKKQNTRNVMLLVKDRVGLENLNRLVSDAHLYHFG 640

Query: 126  KQSVRICLSWLQEIGTEGLIM---LTGGS--SGPIDRAFFFNSSQVAEKRLLTFK--KLF 178
             +  R+  S L++   EGLI+   LTG S     +   +   + +   +++  +   +L 
Sbjct: 641  NRKPRVLKSNLEKY-REGLIVGCSLTGHSINDSDLFHDYSTGNMERIPEKISFYDYIELL 699

Query: 179  GDRLYVNLQRHRG--------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              + Y     + G        Y          LA    + +  ++N  +L  E+ +   +
Sbjct: 700  PRQAYTENIEYNGTGLISGNSYIEKMNQYFYDLAKEKGILVTGSSNVHYLDPEEAKIRTI 759

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA------LENTVEIARRCSFI 284
            L+      V   K         Y +   E++  FS L E       ++NT  IA +   I
Sbjct: 760  LL-YGSGMVHGAKAYKTDNG-FYFRTTGELLEEFSYLGEEAAKEILIQNTNAIAEKIEVI 817

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                 PI   F     D+ ++        KA      R+    +      +   +RL+ E
Sbjct: 818  ----KPIPDGFYPPSIDNAEETVREMTYEKAY-----RIYGNPL-----PEIVEKRLERE 863

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------ 398
            LN I    FS  +L     ++ +  N   VG  RGS   S+ A+ + IT+++ L      
Sbjct: 864  LNAIIGNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGSSLVAFMMGITEVNALYPHYIC 922

Query: 399  -----------------------------------RFSLLFERFLNPDRMSMPDFDIDFC 423
                                                +S+ FE F+  +   +PD D++F 
Sbjct: 923  TNPDCKHVEFIEREGVGIDLPEKKCPKCGQMYKRDGYSIPFEVFMGFNGDKVPDIDLNFS 982

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + + E+ RY +  +G E V +  T  +L  K A   V +  +               D 
Sbjct: 983  GEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAAGYVKKYFE---------------DN 1027

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQ 541
               +S                      ++ +++K EG  +    H  G+V+   D  + +
Sbjct: 1028 GMSIS-------------------QAEVMRLAKKCEGAKKTTGQHPGGMVVVPSDHTIFE 1068

Query: 542  LVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
              P+ +   D  SD   T ++   +++  L+K D LG    T ++   ++       +D+
Sbjct: 1069 FCPVQKPANDENSDSITTHYDYHVMDEQ-LVKLDILGHDDPTTIKLLQEYTG-----LDI 1122

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP  D +T  + ++  +LG+   +  G   A  G+       +  ++   RP     +
Sbjct: 1123 YGIPLSDPDTLKIFSSTESLGVTP-QQIGSEVATFGIPEFGTPFVRQMLLDTRPTTFAEL 1181

Query: 659  VVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLR 714
            V  +   +G +  ++     I         VI  ++ +M       +  G +    + +R
Sbjct: 1182 VRISGLSHGTDVWLNNAQEFIRQKQATLSEVITVRDDIMNYLIDQGIEKGTAFKIMEFVR 1241

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +    K  E   K  +          + +    + +    +   Y F K HA AY +++ 
Sbjct: 1242 KGKPSKDPEGWKKYSDL---------MKEKHVKDWYIESCRRIKYMFPKGHAVAYVMMAI 1292

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNV--------EKIKKFCQ------------------- 807
            + A+ K HYP+ F AA ++ + ++         EK +   +                   
Sbjct: 1293 RIAYFKVHYPLAFYAAYLSRKAEDFNFETLGTPEKARIRLEELSKEGKLDVKKKAEQALC 1352

Query: 808  ----DARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
                +    +I+++P  +       F +  ++I   L A+ G+G     +I+E    + F
Sbjct: 1353 EVMIEMEARHIELLPIDLYHSAGKKFLIQGDKIRVPLIALAGLGGAVIDNILEERQKESF 1412

Query: 863  DSLEDFCSRVDSKKLNRRVL 882
             S+EDF  R    +     +
Sbjct: 1413 ISIEDFKKRTKVSQTIVEKM 1432



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 32/66 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S + G   + +I+ +       A+AITD   + S     + A  AGI+ I+
Sbjct: 337 VELHTHTKMSEMVGVTEVGDIIKRAKQYGHSAVAITDYGVVHSFPGAHKAAKEAGIKAIL 396

Query: 72  GCQLDI 77
           GC+  +
Sbjct: 397 GCEAYM 402


>gi|322411039|gb|EFY01947.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
            dysgalactiae ATCC 27957]
          Length = 1465

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/941 (16%), Positives = 319/941 (33%), Gaps = 184/941 (19%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+ ++          N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKDAREKHGIKNLLQL--------NTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDF 695

Query: 176  ------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                   ++   +   L + +         ++++      P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYRE 755

Query: 230  VL-------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE------NTVE 276
            ++         +  +    +  +P   P  + +  +EM+  F+ L + L       NT +
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKVHFRTTNEMLDEFTFLGKDLAYQVVVQNTQD 815

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            +A R   +  V   +   +I+K  + + +        KA            I        
Sbjct: 816  MADRIEEVEVVKGDLYTPYIDKAEETVAELT----YQKAFE----------IYGNPLPDI 861

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++
Sbjct: 862  IDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVN 920

Query: 397  PLRF-----------------------------------------SLLFERFLNPDRMSM 415
            P+                                            + FE FL  D   +
Sbjct: 921  PMPPHYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKV 980

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R 
Sbjct: 981  PDIDLNFSGDDQPSAHLDVRDIFGAEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYR- 1038

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                         D  VDRL   +    G+ R    H  GIV+ 
Sbjct: 1039 -----------------------------DAEVDRL---AAGAAGVKRTTGQHPGGIVVI 1066

Query: 536  DR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+             T FN   I++  ++K D LG    T+++K  D   
Sbjct: 1067 PNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDL-- 1123

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD     L +    LG+   E  G    + G+       +  +V+  
Sbjct: 1124 ---SGIDPITIPADDPGVMALFSGTEVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVNET 1179

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYS 706
             P     ++  +   +G +  + +   LI   +   + VI  ++ +M            +
Sbjct: 1180 HPTTFSELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLQPKMA 1239

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             +  + +R+ +  KI EE   ++  +I    KN +      +  ++      Y F K+HA
Sbjct: 1240 FTIMERVRKGLWLKISEE---ERNGYIDAMRKNNVPDWYIESCGKI-----KYMFPKAHA 1291

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIK-------------- 803
            AAY +++ + A+ K H+P+ +  A  ++             +E +K              
Sbjct: 1292 AAYVLMALRVAYFKVHHPLMYYCAYFSIRAKAFELKTMSGGLEAVKARMEDISIKRKNNE 1351

Query: 804  ------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +  +   +     +      +F++  + +     A++G+G   A
Sbjct: 1352 ATNVENDLFTTLEIVNEMLERGFKFGKLDLYKSKATEFQIEGDTLIPPFVALEGLGENVA 1411

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + I++A  +  F S  +   R      +  ++E +   G L
Sbjct: 1412 KQIVKARQEGEFLSKMELRKR---GGASSTLVEKMDDMGIL 1449



 Score = 75.0 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  
Sbjct: 334 MPEGQKRVEFHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARK 393

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 394 AGIKAIF 400


>gi|221231173|ref|YP_002510325.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669]
 gi|220673633|emb|CAR68120.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669]
          Length = 1463

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 160/916 (17%), Positives = 314/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALADIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPNKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNEIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLDAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSDATEFIIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 83.5 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLLEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|270292055|ref|ZP_06198270.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. M143]
 gi|270279583|gb|EFA25425.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. M143]
          Length = 1463

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 160/916 (17%), Positives = 314/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELAHRLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPNKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNEIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLDAIKRRMEEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 83.1 bits (204), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 69/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I++  A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEKIVETAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|307710886|ref|ZP_07647313.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis SK321]
 gi|307617331|gb|EFN96504.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis SK321]
          Length = 1463

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 156/912 (17%), Positives = 308/912 (33%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALEN--TVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L     +E     + I +    +         D  ++
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENPNALADIFEPVEVVKGDLYTPFIDKAEE 838

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     +Q
Sbjct: 839  TVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQ 888

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 889  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMP 947

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 948  NKDCPKCGNKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAF 1007

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1008 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1036

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1037 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1093

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG
Sbjct: 1094 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNEIPMDDEGVMALFSGTDVLG 1147

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            +   E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1148 VTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1206

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I  
Sbjct: 1207 KQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEA 1263

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
               N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1264 MKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1318

Query: 796  MDNVE-KIK----------------------------------KFCQDARQFNIQIMPPS 820
                + K                                    +   +  +   +     
Sbjct: 1319 AKAFDIKTMGAGLDAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKFGKLD 1378

Query: 821  VNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R     L+ 
Sbjct: 1379 LYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---GGLSS 1435

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1436 TLVEKMDEMGIL 1447



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|322386941|ref|ZP_08060565.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100]
 gi|321269223|gb|EFX52159.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100]
          Length = 1462

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 155/912 (16%), Positives = 312/912 (34%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEVMPPAIYEPLIAKEQIKDQEELQ 717

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 718  TIIRNLIEVGERLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGENAQPA 777

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L   + I    + +   +    +         D  ++
Sbjct: 778  PLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTPFIDKAEE 837

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     +Q
Sbjct: 838  TVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQ 887

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 888  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMP 946

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 947  DKNCPECGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAF 1006

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1007 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1035

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1036 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1092

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG
Sbjct: 1093 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNDIPMDDAGVMALFSGTDILG 1146

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            + + E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1147 VTE-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1205

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M       L    + +  + +R+ +  KI EE   ++  +I+ 
Sbjct: 1206 KQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEE---ERNGYIAA 1262

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              +N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1263 MKENNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1317

Query: 796  ---------MDNVEKIK--------------------------KFCQDARQFNIQIMPPS 820
                        ++ +K                          +   +  +   +     
Sbjct: 1318 AKAFDIKTMSGGLDAVKRRMSEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFKFGKLD 1377

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +    + + G+G   AR ++ A  +  F S  +   R     L+ 
Sbjct: 1378 LYKSHATEFLIEGDTLIPPFSTMDGLGDNVARQLVRAREEGEFLSKTELRKR---GGLSS 1434

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1435 TLVEKMDDMGIL 1446



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD +N+ S     + A  
Sbjct: 331 MPEGQKRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHSNVQSFPHGYKAAKK 390

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+          +V  V T      L  + + +  +  
Sbjct: 391 AGIQLIYGMEANIVEDRVPIVYNEVDMELSDATYVVFDVETT----GLSAVYNDLIQVAA 446

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D           E+ L  F++   D +
Sbjct: 447 SKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKP--LEQVLKEFQEFCQDSV 504

Query: 183 YVN 185
            V 
Sbjct: 505 LVA 507


>gi|21911223|ref|NP_665491.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS315]
 gi|28896601|ref|NP_802951.1| DNA polymerase III PolC [Streptococcus pyogenes SSI-1]
 gi|25452927|sp|Q8K5S8|DPO3_STRP3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|21905436|gb|AAM80294.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
            MGAS315]
 gi|28811855|dbj|BAC64784.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
            SSI-1]
          Length = 1465

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/941 (16%), Positives = 323/941 (34%), Gaps = 184/941 (19%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+ ++          N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKDAREKHGIKNLLQL--------NTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDF 695

Query: 176  ------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                   ++   +   L + +         ++++    + P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYRE 755

Query: 230  VL-------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVE 276
            ++         +  +    +  +P   P  + +  +EM+  F+ L +       +ENT +
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVENTQD 815

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
             A R   +  V   +   +I+K  + + +        KA            I        
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELT----YQKAFE----------IYGNPLPDI 861

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++
Sbjct: 862  IDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVN 920

Query: 397  PLRF-----------------------------------------SLLFERFLNPDRMSM 415
            P+                                            + FE FL  D   +
Sbjct: 921  PMPPHYVCPSCQHSEFITDGSVGSGYDLPNKACPKCGTPYQKDGQDIPFETFLGFDGDKV 980

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R 
Sbjct: 981  PDIDLNFSGDDQPSAHLDVRDIFGAEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYR- 1038

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                         D  VDRL   +    G+ R    H  GIV+ 
Sbjct: 1039 -----------------------------DAEVDRL---AAGAAGVKRTTGQHPGGIVVI 1066

Query: 536  DR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+             T FN   I++  ++K D LG    T+++K  D   
Sbjct: 1067 PNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG 1125

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD     L +    LG+   E  G    + G+       +  +V+  
Sbjct: 1126 -----IDPITIPADDPGVMALFSGTEVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVNET 1179

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYS 706
             P     ++  +   +G +  + +   LI   +   + VI  ++ +M     A L    +
Sbjct: 1180 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMA 1239

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             +  + +R+ +  KI EE   ++  +I    +N +      +  ++      Y F K+HA
Sbjct: 1240 FTIMERVRKGLWLKISEE---ERNGYIDAMRENNVPDWYIESCGKI-----KYMFPKAHA 1291

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIK-------------- 803
            AAY +++ + A+ K H+P+ +  A  ++             ++ +K              
Sbjct: 1292 AAYVLMALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNE 1351

Query: 804  ------------KFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +  +   +        +  ++F++  + +     A++G+G   A
Sbjct: 1352 ATNVENDLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVA 1411

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + I++A  +  F S  +   R      +  ++E +   G L
Sbjct: 1412 KQIVKARQEGEFLSKMELRKR---GGASSTLVEKMDEMGIL 1449



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 34/67 (50%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V L  H++ S ++  L++ +++D  A     A+AITD  N+ S      +A  
Sbjct: 334 MPEGQKRVELHAHTNMSTMDALLTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARK 393

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 394 AGIKAIF 400


>gi|169833032|ref|YP_001693801.1| DNA polymerase III PolC [Streptococcus pneumoniae Hungary19A-6]
 gi|168995534|gb|ACA36146.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae Hungary19A-6]
          Length = 1463

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 157/916 (17%), Positives = 314/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNL-----QRHRGYDR 194
            EGLI+ +  + G +  A        A +    +   ++    +Y  L      +     +
Sbjct: 659  EGLILGSACAEGEVFDAVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALADIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPNKDCPKCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNEIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLDAIKHRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+         A+AITD  N+ S     + A  
Sbjct: 332 MPEGDRRVEFHAHTNMSTMDALPEVEEIVATATKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVERDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|227432323|ref|ZP_03914316.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp.
            cremoris ATCC 19254]
 gi|227351929|gb|EEJ42162.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp.
            cremoris ATCC 19254]
          Length = 1437

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 164/948 (17%), Positives = 318/948 (33%), Gaps = 204/948 (21%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            A    ++A            L+   + N +MT              LLV  A G + L +
Sbjct: 575  AWRLIKEAQE-------RYNLNRHNELNDRMTEGDAWKHGRPVHATLLVQNATGLKNLYK 627

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVSR  + +   +  RI  S L++   EGL++ TG +SG +  +      Q AEK+   +
Sbjct: 628  LVSRSNI-EFFARVPRIPRSILEQY-REGLLVGTGDTSGDVIISLIEKGIQEAEKKAAYY 685

Query: 175  KKL-------FGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              +       +   +   L       +     +V +    + P+V T +  + + ED   
Sbjct: 686  DFIEIQPTANYQPMIESGLIATEEKLQSILKDIVAIGDKLKKPVVVTEDVKYTNPEDKIY 745

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRC 281
             ++L+A       +        PD   K   E++  ++ +         ++NT  +A   
Sbjct: 746  RNILIATQPGNPQN----RTALPDLNFKTTQELLDDYAFMGADLAKKLVIDNTHLVANML 801

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
              I  + +   P  I    D++   E      K   G                ++ + R+
Sbjct: 802  EDIDPLKSGSYPPNIPGAGDEL--TERTYRTAKQWYG------------EPIPKEIQARI 847

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF- 400
            D EL  I    F+ +++I    +  + K+   VG  RGS   S  A    IT+++PL   
Sbjct: 848  DQELKAIIGNGFAPHYIIAQRLVAKSVKDGYLVG-SRGSVGSSFVATMSGITEVNPLPPH 906

Query: 401  -----------------------------------------SLLFERFLNPDRMSMPDFD 419
                                                     ++ FE F+      +PD D
Sbjct: 907  YRSAHGDYFELVDPKEYESGYDLPEKEDPNHPGEFLIGDGQNIPFETFMGFTGNKVPDID 966

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +     Y++  +G   V +  T  ++  K A   V +A +  + Q  R     
Sbjct: 967  LNFSGDYQPIAHNYMKVLFGEHNVYRAGTIATVAEKTAFGYV-KAYEREHDQHYRGA--- 1022

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP- 538
                                           +  ++Q + G+ R    H  GI+I  R  
Sbjct: 1023 ------------------------------EIERLAQGMTGVKRTTGQHPGGILIVPREY 1052

Query: 539  -LSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T  +   I    L+K D LG    T+++   D       
Sbjct: 1053 EVYDFTPIQYPADDQKSLWQTTHMDYHSIHD-NLLKMDILGHDDPTMVRTLKDM-----S 1106

Query: 595  KVDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCI 640
             +D   IP +D     L               +  GTLG+ +  ++ +R  L   QP   
Sbjct: 1107 GIDPQSIPANDPGVLSLFTSTEALGVTPEQIFSNTGTLGLPEFGTNFVRGMLAETQPHTY 1166

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             +++ +  L     +         KNG   I ++    D ++ +     +          
Sbjct: 1167 SELLQISGLSHGTDVWLGNANELIKNGTATIGTVIGTRDKIMTDLINWGVP--------- 1217

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
              +  + +  + +R+   K I EE             +  + +      +        Y 
Sbjct: 1218 --AADAFNIMEKVRKG--KGITEE------------YQKQLREEKIPEWYIQSMLKIKYM 1261

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK----------------- 803
            F ++HAAAY +++ + A+ K ++P  + A   ++  D  + +                  
Sbjct: 1262 FPRAHAAAYVLMALRIAYFKVYFPTIYYATYFSVRADAFDIVAMSRGKDATKAAIQKLKS 1321

Query: 804  ----------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVG 846
                            +   +A + NI      +N    +++ +  + +     ++ G+G
Sbjct: 1322 LGNDATVGDKNLLTVLEMANEALERNISFAMVDLNKSEALEWVIDGDTLIPPFVSLPGLG 1381

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               A+ I+    +KPF S ED   R    K+++ ++E +     LD  
Sbjct: 1382 DNVAKQIVAERTEKPFISKEDLKKR---GKVSQTIIEFMTLHSVLDGL 1426



 Score = 65.0 bits (157), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H++ S ++     + +     +  Q A+A+TDT N+    E S      G++ I 
Sbjct: 331 IELHAHTNMSAMDAVTDFSGVAKLAKSWGQTALAVTDTGNVQGFPEASAAGAKNGLKMIY 390

Query: 72  GC 73
           G 
Sbjct: 391 GM 392


>gi|116617801|ref|YP_818172.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc
            mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096648|gb|ABJ61799.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc
            mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 1437

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 163/938 (17%), Positives = 322/938 (34%), Gaps = 184/938 (19%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            A    ++A            L+   + N +MT              LLV  A G + L +
Sbjct: 575  AWRLIKEAHE-------RYNLNRHNELNDRMTEGDAWKHGRPVHATLLVQNATGLKNLYK 627

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVSR  + +   +  RI  S L++   EGL++ TG +SG +  +      Q AEK+   +
Sbjct: 628  LVSRSNI-EFFARVPRIPRSILEQY-REGLLVGTGDTSGDVIISLIEKGIQEAEKKAAYY 685

Query: 175  KKL-------FGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              +       +   +   L       +     +V +    + P+V T +  + + ED   
Sbjct: 686  DFIEIQPTANYQPMIESGLIATEEKLQSILKDMVAIGDKLKKPVVVTEDVKYTNPEDKIY 745

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRC 281
             ++L+A       +        PD   K   E++  ++ +         ++NT  +A   
Sbjct: 746  RNILIATQPGNPQN----RTALPDLNFKTTQELLDDYAFMGADLAKKLVIDNTHLVANML 801

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
              I  + +   P  I    D++   E      K   G                ++ + R+
Sbjct: 802  EDIEPLKSGSYPPNIPGAGDEL--TERTYRTAKQWYG------------EPIPKEIQARI 847

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF- 400
            D EL  I    F+ +++I    +  + K+   VG  RGS   S  A    IT+++PL   
Sbjct: 848  DQELKAIIGNGFAPHYIIAQRLVAKSVKDGYLVG-SRGSVGSSFVATMSGITEVNPLPPH 906

Query: 401  -----------------------------------------SLLFERFLNPDRMSMPDFD 419
                                                     ++ FE F+      +PD D
Sbjct: 907  YRSAHGDYFELVDPKEYESGYDLPEKEDPNHPGEFLIGDGQNIPFETFMGFTGNKVPDID 966

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +     Y++  +G   V +  T  ++  K A   V +A +  + Q  R     
Sbjct: 967  LNFSGDYQPIAHNYMKVLFGEHNVYRAGTIATVAEKTAFGYV-KAYEREHDQHYRGA--- 1022

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP- 538
                                           +  ++Q + G+ R    H  GI+I  R  
Sbjct: 1023 ------------------------------EIERLAQGMTGVKRTTGQHPGGILIVPREY 1052

Query: 539  -LSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T  +   I    L+K D LG    T+++   D       
Sbjct: 1053 EVYDFTPIQYPADDQKSLWQTTHMDYHSIHD-NLLKMDILGHDDPTMVRTLKDM-----S 1106

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D   IP +D     L T+   LG+   E         G+       +  +++  +P  
Sbjct: 1107 GIDPQSIPANDPGVLSLFTSTEALGVTP-EQIFSNTGTLGLPEFGTNFVRGMLTETQPHT 1165

Query: 655  IDNIVVYNNRKNGKE-KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEA 710
               ++  +   +G +  + + + LI+        VI  ++++M       + +  + +  
Sbjct: 1166 YSELLQISGLSHGTDVWVGNANELIENGTATIGTVIGTRDKIMTDLINWGVPAADAFNIM 1225

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            + +R+   K I EE             +  + +      +        Y F ++HAAAY 
Sbjct: 1226 EKVRKG--KGITEE------------YQKQLREEKIPEWYIQSMLKIKYMFPRAHAAAYV 1271

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK--------------------------- 803
            +++ + A+ K ++P  + A   ++  D  + +                            
Sbjct: 1272 LMALRIAYFKVYFPTIYYATYFSVRADAFDIVAMSRGKDATKAAIQKLKSLGNDATVGDK 1331

Query: 804  ------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                  +   +A + NI      +N    +++ +  + +     ++ G+G   A+ I+ A
Sbjct: 1332 NLLTVLEMANEALERNITFAMVDLNKSEALEWVIDGDTLIPPFVSLPGLGDNVAKQIVAA 1391

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              +KPF S ED   R    K+++ ++E +     LD  
Sbjct: 1392 RTEKPFISKEDLKKR---GKVSQTIIEFMTLHSVLDGL 1426



 Score = 65.0 bits (157), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H++ S ++     + +     +  Q A+A+TDT N+    E S      G++ I 
Sbjct: 331 IELHAHTNMSAMDAVTDFSGVAKLAKSWGQTALAVTDTGNVQGFPEASAAGAKNGLKMIY 390

Query: 72  GC 73
           G 
Sbjct: 391 GM 392


>gi|71904322|ref|YP_281125.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS6180]
 gi|123747742|sp|Q48R90|DPO3_STRPM RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|71803417|gb|AAX72770.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS6180]
          Length = 1465

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/941 (16%), Positives = 322/941 (34%), Gaps = 184/941 (19%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+ ++          N  +  +       +    + V    G + + +LV
Sbjct: 586  FLRDAREKHGIKNLLQL--------NTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDF 695

Query: 176  ------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                   ++   +   L + +         ++++      P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYRE 755

Query: 230  VL-------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVE 276
            ++         +  +    +  +P   P  + +  +EM+  F+ L +       +ENT +
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVENTQD 815

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
             A R   +  V   +   +I+K  + + +        KA            I        
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELT----YQKAFE----------IYGNPLPDI 861

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++
Sbjct: 862  IDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVN 920

Query: 397  PLRF-----------------------------------------SLLFERFLNPDRMSM 415
            P+                                            + FE FL  D   +
Sbjct: 921  PMPPHYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKV 980

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R 
Sbjct: 981  PDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYR- 1038

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                         D  VDRL   +    G+ R    H  GIV+ 
Sbjct: 1039 -----------------------------DAEVDRL---AAGAAGVKRTTGQHPGGIVVI 1066

Query: 536  DR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+             T FN   I++  ++K D LG    T+++K  D   
Sbjct: 1067 PNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG 1125

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD     L +    LG+   E  G    + G+       +  +V+  
Sbjct: 1126 -----IDPITIPADDPGVMALFSGTEILGVTP-EQIGTPTGMLGIPEFGTNFVRGMVNET 1179

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYS 706
             P     ++  +   +G +  + +   LI   +   + VI  ++ +M     A L    +
Sbjct: 1180 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMA 1239

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             +  + +R+ +  KI EE   ++  +I    +N +      +  ++      Y F K+HA
Sbjct: 1240 FTIMERVRKGLWLKISEE---ERNGYIDAMRENNVPDWYIESCGKI-----KYMFPKAHA 1291

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIK-------------- 803
            AAY +++ + A+ K H+P+ +  A  ++             ++ +K              
Sbjct: 1292 AAYVLMALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNE 1351

Query: 804  ------------KFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +  +   +        +  ++F++  + +     A++G+G   A
Sbjct: 1352 ATNVENDLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVA 1411

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + I++A  +  F S  +   R      +  ++E +   G L
Sbjct: 1412 KQIVKARQEGEFLSKMELRKR---GGASSTLVEKMDEMGIL 1449



 Score = 77.7 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V L  H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  
Sbjct: 334 MPEGQKRVELHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARK 393

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 394 AGIKAIF 400


>gi|251781676|ref|YP_002995978.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
            equisimilis GGS_124]
 gi|242390305|dbj|BAH80764.1| DNA polymerase III subunit alpha [Streptococcus dysgalactiae subsp.
            equisimilis GGS_124]
          Length = 1465

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 158/941 (16%), Positives = 320/941 (34%), Gaps = 184/941 (19%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+ ++          N  +  +       +    + V    G + + +LV
Sbjct: 586  FLRDAREKHGIKNLLQL--------NTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDF 695

Query: 176  ------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                   ++   +   L + +         ++++    + P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYRE 755

Query: 230  VL-------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE------NTVE 276
            ++         +  +    +  +P   P  + +  +EM+  F+ L + L       NT +
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVQNTQD 815

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            +A R   +  V   +   +I+K  + + +        KA            I        
Sbjct: 816  MADRIEEVEVVKGDLYTPYIDKAEETVAELT----YQKAFE----------IYGNPLPDI 861

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++
Sbjct: 862  IDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVN 920

Query: 397  PLRF-----------------------------------------SLLFERFLNPDRMSM 415
            P+                                            + FE FL  D   +
Sbjct: 921  PMPPHYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKV 980

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R 
Sbjct: 981  PDIDLNFSGDDQPSAHLDVRDIFGAEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYR- 1038

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                         D  VDRL   +    G+ R    H  GIV+ 
Sbjct: 1039 -----------------------------DAEVDRL---AAGAAGVKRTTGQHPGGIVVI 1066

Query: 536  DR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+             T FN   I++  ++K D LG    T+++K  D   
Sbjct: 1067 PNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDL-- 1123

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD     L +    LG+   E  G    + G+       +  +V+  
Sbjct: 1124 ---SGIDPITIPADDPGVMALFSGTEVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVNET 1179

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYS 706
             P     ++  +   +G +  + +   LI   +   + VI  ++ +M            +
Sbjct: 1180 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLQPKMA 1239

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             +  + +R+ +  KI EE   ++  +I    +N +      +  ++      Y F K+HA
Sbjct: 1240 FTIMERVRKGLWLKISEE---ERNGYIDAMRENNVPDWYIESCGKI-----KYMFPKAHA 1291

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIK-------------- 803
            AAY +++ + A+ K H+P+ +  A  ++             +E +K              
Sbjct: 1292 AAYVLMALRVAYFKVHHPLMYYCAYFSIRAKAFELKTMSGGLEAVKARMEDISIKRKNNE 1351

Query: 804  ------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +  +   +     +      +F++  + +     A++G+G   A
Sbjct: 1352 ATNVENDLFTTLEIVNEMLERGFKFGKLDLYKSKATEFQIEGDTLIPPFVALEGLGENVA 1411

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + I++A  +  F S  +   R      +  ++E +   G L
Sbjct: 1412 KQIVKARQEGEFLSKMELRKR---GGASSTLVEKMDDMGIL 1449



 Score = 75.0 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  
Sbjct: 334 MPEGQKRVEFHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARK 393

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 394 AGIKAIF 400


>gi|171778812|ref|ZP_02919874.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
 gi|171282458|gb|EDT47882.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
          Length = 1464

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 161/916 (17%), Positives = 315/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+  +       V    + V    G + + +LVS   +    +   RI  + L +   
Sbjct: 602  NTKLVAEDSYKKARVKHATIYVQNQTGLKNIFKLVSLSNVK-YFEGVARIPRTVL-DAHR 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYD-----R 194
            EGL++ T  S G +  A   +    A K    +   ++    +Y  L            R
Sbjct: 660  EGLLLGTACSEGEVFDAVLSSGVDAAVKVAKYYDFIEVMPPAIYAPLLAQGTIKDEEGIR 719

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-------VAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  ED    ++++        +       +  +P 
Sbjct: 720  QVIRDLLEVGRRLNKPVLATGNVHYIEPEDEIYREIIVRSLGQGAPINRPIGRGEDAQPA 779

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALE------NTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E +       NT + A R   +  V   +   F+EK  +
Sbjct: 780  PLPKAHFRTTNEMLDEFAFLGEDVAYEIVVKNTNDFADRFEEVEVVKKDLYTPFLEKSEE 839

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             +          KA            I          +R++ EL  I    F+  +L   
Sbjct: 840  RV----AEMTYQKAFE----------IYGNPLPDIVDRRIEKELTSILGNGFAVIYLASQ 885

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------- 399
              +  + K    VG  RGS   S  A  + IT+++P+                       
Sbjct: 886  MLVIRSNKRGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSKFITDGSVGSG 944

Query: 400  -------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  D +      V++ +G 
Sbjct: 945  YDLPDKDCPECGTRYKKDGHDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGE 1004

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            +   +  T G++  + A   V +  +  Y       K+ P                    
Sbjct: 1005 QYAFRAGTVGTVADRTAYGFV-KGYERDYG------KMYP-------------------- 1037

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                +  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1038 ----EAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDLSAEWQT 1090

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D   IP DD +   L +  
Sbjct: 1091 THFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG-----IDPKDIPADDPDVMALFSGT 1144

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1145 EVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVEETHPTTFAELLQLSGLSHGTDVWLGNA 1203

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   +   + VI  ++ +M     A L    + +  + +R+ M  KI +E   ++  
Sbjct: 1204 QDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGMWLKISDE---ERNG 1260

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I    +N +      +  ++      Y F K+HAAAY +++ + A+ K HYP+ +  A 
Sbjct: 1261 YIEAMRENNVPDWYIESCGKI-----KYMFPKAHAAAYVLMALRVAYFKVHYPIYYYCAY 1315

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1316 FSIRAKAFDIKTMSAGLDAVKERMAEISTKRKNNEASNVEIDLYTTLELVNEMLERGYKF 1375

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ I++A  +  F S  +   R    
Sbjct: 1376 GQLDLYRSDATEFIIDGDTLIPPFVAMDGLGENVAKQIVKAREEGEFLSKMELRKR---G 1432

Query: 876  KLNRRVLESLVFAGAL 891
             ++  ++E +   G L
Sbjct: 1433 GVSATLVEKMDEMGIL 1448



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 87/274 (31%), Gaps = 19/274 (6%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++  ++D  A     A+AITD  N+ S      +A  
Sbjct: 333 MPEGQKRVEFHAHTNMSTMDALPTVEELIDTAAKWGHKAVAITDHCNVQSFPHGYHRARK 392

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            GI+ I G + +I         N           +V  V T      L  + + +  +  
Sbjct: 393 NGIKAIFGLEANIVEDKVPIAYNPQDIELNEATFVVFDVETT----GLSAVNNDLIQIAA 448

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      +    E    G  L   T   +G  D           E+ L  F+    D +
Sbjct: 449 SKMYKGNIVEQFDEFINPGHHLSAFTTELTGITDNHVRNAKP--IEEVLQMFQDFCQDTV 506

Query: 183 YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
              L  H     +    +      H +P++ T   +   E     +       H      
Sbjct: 507 ---LVAHNAT--FDVGFMNANYERHGMPII-TQPVIDTLEFARNLYP--EYKRHGLGPLT 558

Query: 243 KDRPRVTPDHYLKNRSEMVS---IFSDLPEALEN 273
           K        H++ N     +   +F  L EA EN
Sbjct: 559 KRFQVSLEHHHMANYDAEATGRLLFIFLKEAREN 592


>gi|306824435|ref|ZP_07457781.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str.
            73H25AP]
 gi|304433222|gb|EFM36192.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str.
            73H25AP]
          Length = 1463

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 154/910 (16%), Positives = 309/910 (33%), Gaps = 167/910 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY---VNLQRHRGYDRY- 195
            EGLI+ +  S G +  A        A +    +   ++    +Y   +  ++ +  D   
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMDELQ 718

Query: 196  -RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALEN--TVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L     +E     + I +    +         D  ++
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENPNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     +Q
Sbjct: 839  TVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQ 888

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 889  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMP 947

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 948  NKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAF 1007

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1008 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1036

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1037 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1093

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG
Sbjct: 1094 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNEIPMDDEGVMALFSGTDVLG 1147

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            +   E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1148 VTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1206

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M     A L    + +  + +R+ M  KI EE   ++  +I  
Sbjct: 1207 KQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGMWLKISEE---ERNGYIEA 1263

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
               N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1264 MKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1318

Query: 796  MDNVE-KIK----------------------------------KFCQDARQFNIQIMPPS 820
                + K                                    +   +  +   +     
Sbjct: 1319 AKAFDIKTMGAGLDAIKRRMQEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFKFGKLD 1378

Query: 821  VNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R     L+ 
Sbjct: 1379 LYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---GGLSS 1435

Query: 880  RVLESLVFAG 889
             ++E +   G
Sbjct: 1436 TLVEKMDEMG 1445



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|71911485|ref|YP_283035.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS5005]
 gi|71854267|gb|AAZ52290.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS5005]
          Length = 1465

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/941 (16%), Positives = 322/941 (34%), Gaps = 184/941 (19%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+ ++          N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKDAREKHGIKNLLQL--------NTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDF 695

Query: 176  ------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                   ++   +   L + +         ++++    + P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYRE 755

Query: 230  VL-------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE------NTVE 276
            ++         +  +    +  +P   P  + +  +EM+  F+ L + L       NT +
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVQNTQD 815

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
             A R   +  V   +   +I+K  + + +        KA            I        
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELT----YQKAFE----------IYGNPLPDI 861

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++
Sbjct: 862  IDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVN 920

Query: 397  PLRF-----------------------------------------SLLFERFLNPDRMSM 415
            P+                                            + FE FL  D   +
Sbjct: 921  PMPPHYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKV 980

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R 
Sbjct: 981  PDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYR- 1038

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                         D  VDRL   +    G+ R    H  GIV+ 
Sbjct: 1039 -----------------------------DAEVDRL---AAGAAGVKRTTGQHPGGIVVI 1066

Query: 536  DR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+             T FN   I++  ++K D LG    T+++K  D   
Sbjct: 1067 PNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDL-- 1123

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD     L +    LG+   E  G    + G+       +  +V+  
Sbjct: 1124 ---SGIDPITIPADDPGVMALFSGTEVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVNET 1179

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYS 706
             P     ++  +   +G +  + +   LI   +   + VI  ++ +M     A L    +
Sbjct: 1180 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMA 1239

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             +  + +R+ +  KI EE   ++  +I    +N +      +  ++      Y F K+HA
Sbjct: 1240 FTIMERVRKGLWLKISEE---ERNGYIDAMRENNVPDWYIESCGKI-----KYMFPKAHA 1291

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIK-------------- 803
            AAY +++ + A+ K H+P+ +  A  ++             ++ +K              
Sbjct: 1292 AAYVLMALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNE 1351

Query: 804  ------------KFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +  +   +        +  ++F++  + +     A++G+G   A
Sbjct: 1352 ATNVENDLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVA 1411

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + I++A  +  F S  +   R      +  ++E +   G L
Sbjct: 1412 KQIVKARQEGEFLSKMELRKR---GGASSTLVEKMDEMGIL 1449



 Score = 78.1 bits (191), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V L  H++ S ++   ++ +++D  A     AIAITD  N+ S      +A  
Sbjct: 334 MPEGQKRVELHAHTNMSTMDALPTVESLIDTAAKWGHKAIAITDHANVQSFPHGYHRARK 393

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 394 AGIKAIF 400


>gi|76363558|sp|P0C0B7|DPO3_STRPY RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|9789541|gb|AAF98345.1| DNA polymerase III alpha chain [Streptococcus pyogenes]
          Length = 1465

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/941 (16%), Positives = 322/941 (34%), Gaps = 184/941 (19%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+ ++          N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKDAREKHGIKNLLQL--------NTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDF 695

Query: 176  ------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                   ++   +   L + +         ++++    + P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYRE 755

Query: 230  VL-------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE------NTVE 276
            ++         +  +    +  +P   P  + +  +EM+  F+ L + L       NT +
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVQNTQD 815

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
             A R   +  V   +   +I+K  + + +        KA            I        
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELT----YQKAFE----------IYGNPLPDI 861

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++
Sbjct: 862  IDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVN 920

Query: 397  PLRF-----------------------------------------SLLFERFLNPDRMSM 415
            P+                                            + FE FL  D   +
Sbjct: 921  PMPPHYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKV 980

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R 
Sbjct: 981  PDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYR- 1038

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                         D  VDRL   +    G+ R    H  GIV+ 
Sbjct: 1039 -----------------------------DAEVDRL---AAGAAGVKRTTGQHPGGIVVI 1066

Query: 536  DR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+             T FN   I++  ++K D LG    T+++K  D   
Sbjct: 1067 PNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG 1125

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD     L +    LG+   E  G    + G+       +  +V+  
Sbjct: 1126 -----IDPITIPADDPGVMALFSGTEVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVNET 1179

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYS 706
             P     ++  +   +G +  + +   LI   +   + VI  ++ +M     A L    +
Sbjct: 1180 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMA 1239

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             +  + +R+ +  KI EE   ++  +I    +N +      +  ++      Y F K+HA
Sbjct: 1240 FTIMERVRKGLWLKISEE---ERNGYIDAMRENNVPDWYIESCGKI-----KYMFPKAHA 1291

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIK-------------- 803
            AAY +++ + A+ K H+P+ +  A  ++             ++ +K              
Sbjct: 1292 AAYVLMALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNE 1351

Query: 804  ------------KFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +  +   +        +  ++F++  + +     A++G+G   A
Sbjct: 1352 ATNVENDLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVA 1411

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + I++A  +  F S  +   R      +  ++E +   G L
Sbjct: 1412 KQIVKARQEGEFLSKMELRKR---GGASSTLVEKMDEMGIL 1449



 Score = 78.1 bits (191), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V L  H++ S ++   ++ +++D  A     AIAITD  N+ S      +A  
Sbjct: 334 MPEGQKRVELHAHTNMSTMDALPTVESLIDTAAKWGHKAIAITDHANVQSFPHGYHRARK 393

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 394 AGIKAIF 400


>gi|269123116|ref|YP_003305693.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM
            12112]
 gi|268314442|gb|ACZ00816.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM
            12112]
          Length = 1465

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 164/918 (17%), Positives = 321/918 (34%), Gaps = 161/918 (17%)

Query: 88   QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML 147
            + K       +I +LV    G +RL ELVS  +L   G++  RI  + L++     LI  
Sbjct: 582  EKKPKIADTENITILVKNLAGLKRLYELVSISHLKYYGEKKPRILKTDLEKDRENFLISS 641

Query: 148  TGGSSGPIDRAFFFN------SSQVAEKRLLTF-------KKLFGDRLYVNLQRHRGYDR 194
            +   SG  ++    +      S +   ++L  +       + ++ D + +       +  
Sbjct: 642  SPIYSGRFNKGKLVSLYVRGISREEIMQQLDFYDYVQVYPRCIYNDAIEMEEISGYEFIE 701

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                  VQ+A      +VAT N  +L + D ++   L+  +     +     ++   +Y 
Sbjct: 702  QMNKDFVQMAKEKNKLVVATGNVYYLDDRDKKSKAALLLGSDRAFRTY----QIDTGNYY 757

Query: 255  KNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +   EM+  FS L E    +  +    + +  ++   PI     +   +  + E  N   
Sbjct: 758  RTTEEMLDEFSYLNEEDIKDVVIYNTHKINDQIEKIKPIPDGDYKPVMEGAEDEVRNMTY 817

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            NKA            +      +    R+  EL+ I    F+  +LI    ++ +  N  
Sbjct: 818  NKAYE----------LYGNPLPEAVETRVKRELDSIIGNGFAVLYLIAQKLVKKSVDNGY 867

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPL---------------------------------- 398
             VG  RGS   S+ AY + IT+++ L                                  
Sbjct: 868  LVG-SRGSVGSSLVAYFMGITEVNALYPHYRCEECKYFEMKDFEGSGVDLEEKNCPKCNS 926

Query: 399  -----RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
                   S+ FE F+       PD D++F  + + E+ +Y +  +G + V +  T   L 
Sbjct: 927  KLIRDGHSIPFEVFMGFKGDKTPDIDLNFSGEYQGEIHKYTKELFGDDYVFRAGTISGLA 986

Query: 454  AKAALRDVGRALQ--MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA--DPSVD 509
             K A     +  +  +       +             +   +++ +  E      + +  
Sbjct: 987  EKNAYTTAKKYFEENIKKDFEKEIYNKYKTSLKKLDPITRSSEEKKLEERINDYCNKNKA 1046

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIE 564
             +  I+ K  G  +    H  G+++      +    P+     D  S    T F+   ++
Sbjct: 1047 EIYRIATKCTGARKTTGQHPGGMIVVPDYKSIYDFTPVQYPANDESSGSITTHFDYHVMD 1106

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------- 615
            +  L+K D LG    T L+   D        VD+  IP  D +   +  +          
Sbjct: 1107 QQ-LVKLDILGHDDPTTLRMLQDL-----TNVDIYNIPLTDPKVISIFNSTEALGVSEEQ 1160

Query: 616  -----GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
                 GT GI +  +  +++ LE   P    +++ +  L       ++ + N ++  +E 
Sbjct: 1161 IGSKMGTNGIPEFGTDFVKKMLEDTLPTTFAELVRISGLSHGT---DVWLNNAQEYVREG 1217

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA----DVLRRAMGKKIKEEMD 726
            I ++  +I             ++ +M    +  G   SEA    + +R+    K KE+ +
Sbjct: 1218 IATLSEVI-----------TVRDDIMN-RLIDKGMDKSEAFNIMEFVRKGQPSKNKEKWE 1265

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + KE          +  +     +    +   Y F K HA AY +++ + A+ K  YP+E
Sbjct: 1266 QYKEI---------MKASNIDEWYIESCEKIKYMFPKGHAVAYVMMAVRIAYFKVFYPLE 1316

Query: 787  FLAASMTLEMDNV------------------------------EK----IKKFCQDARQF 812
            F  A +  +  +                               +K    + +   +    
Sbjct: 1317 FYTAFLNRKYADFSFEKMFGSIDEVKMNLQKLKELETRDLKVLDKKQIILLEILVEMHYR 1376

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
             I+++   +       F + D +I   L A+  +G   AR I E    K F S+ED   R
Sbjct: 1377 GIELLNIDIYKSDSMKFTIEDGKIRLPLIAMDQLGEVVARTIAEEREIKEFTSIEDLTKR 1436

Query: 872  VDSKKLNRRVLESLVFAG 889
                K     L+     G
Sbjct: 1437 CRIPKTVLETLKCFGCIG 1454



 Score = 46.9 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 6/52 (11%)

Query: 12  VHLQVHSSYSLLEGALSLNN-----ILDKIAADQQPAIAITDTNNLFSALEF 58
           + L  H++ S +   +   +     ++++       A+A+TD   +  A  F
Sbjct: 312 IELAAHTNMSDMLSTIEPKSGKEGSLVNRAREFGHKAVAVTDYGVVH-AFPF 362


>gi|15675759|ref|NP_269933.1| DNA polymerase III PolC [Streptococcus pyogenes M1 GAS]
 gi|81175278|sp|P0C0B8|DPO3_STRP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|13622981|gb|AAK34654.1| DNA polymerase III (alpha subunit) [Streptococcus pyogenes M1 GAS]
          Length = 1465

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/941 (16%), Positives = 322/941 (34%), Gaps = 184/941 (19%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+ ++          N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKDAREKHGIKNLLQL--------NTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDF 695

Query: 176  ------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                   ++   +   L + +         ++++    + P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYRE 755

Query: 230  VL-------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE------NTVE 276
            ++         +  +    +  +P   P  + +  +EM+  F+ L + L       NT +
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVQNTQD 815

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
             A R   +  V   +   +I+K  + + +        KA            I        
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELT----YQKAFE----------IYGNPLPDI 861

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++
Sbjct: 862  IDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVN 920

Query: 397  PLRF-----------------------------------------SLLFERFLNPDRMSM 415
            P+                                            + FE FL  D   +
Sbjct: 921  PMPPHYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKV 980

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R 
Sbjct: 981  PDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYR- 1038

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                         D  VDRL   +    G+ R    H  GIV+ 
Sbjct: 1039 -----------------------------DAEVDRL---AAGAAGVKRTTGQHPGGIVVI 1066

Query: 536  DR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+             T FN   I++  ++K D LG    T+++K  D   
Sbjct: 1067 PNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG 1125

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD     L +    LG+   E  G    + G+       +  +V+  
Sbjct: 1126 -----IDPITIPADDPGVMALFSGTEVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVNET 1179

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYS 706
             P     ++  +   +G +  + +   LI   +   + VI  ++ +M     A L    +
Sbjct: 1180 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMA 1239

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             +  + +R+ +  KI EE   ++  +I    +N +      +  ++      Y F K+HA
Sbjct: 1240 FTIMERVRKGLWLKISEE---ERNGYIDAMRENNVPDWYIESCGKI-----KYMFPKAHA 1291

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIK-------------- 803
            AAY +++ + A+ K H+P+ +  A  ++             ++ +K              
Sbjct: 1292 AAYVLMALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNE 1351

Query: 804  ------------KFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +  +   +        +  ++F++  + +     A++G+G   A
Sbjct: 1352 ATNVENDLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVA 1411

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + I++A  +  F S  +   R      +  ++E +   G L
Sbjct: 1412 KQIVKARQEGEFLSKMELRKR---GGASSTLVEKMDEMGIL 1449



 Score = 78.1 bits (191), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V L  H++ S ++   ++ +++D  A     AIAITD  N+ S      +A  
Sbjct: 334 MPEGQKRVELHAHTNMSTMDALPTVESLIDTAAKWGHKAIAITDHANVQSFPHGYHRARK 393

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 394 AGIKAIF 400


>gi|157363106|ref|YP_001469873.1| DNA polymerase III PolC [Thermotoga lettingae TMO]
 gi|157313710|gb|ABV32809.1| DNA polymerase III, alpha subunit [Thermotoga lettingae TMO]
          Length = 1379

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 165/886 (18%), Positives = 319/886 (36%), Gaps = 168/886 (18%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                  ++V T EG + L +L+S  ++        RI  S LQ +   GL++ +    G 
Sbjct: 556  KPFHTTIIVQTKEGLKNLYKLISNAHVK-YFYSVPRIPKSELQAL-RAGLLIGSACVGGE 613

Query: 155  IDRAFFFN-SSQVAEKRLLTFKKLFGDRL-YVNLQRHRGYDRYRESQVV----QLAYTHE 208
            + +      +    E+++  +  +    L  + +    G  R R  ++     ++A    
Sbjct: 614  LIQEMLTGANESEIEEKMAFYDFVEVMPLDLLPVTNDLGLTRERLKELYIKLYEIARKIN 673

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV----SIF 264
            +P+V T +  FL  ED +   VL A     +  Q       P  YL+   EM+     IF
Sbjct: 674  VPVVMTGDVHFLDPEDEKIRKVLQAPQQENISEQ-------PAAYLRTTDEMLKAALEIF 726

Query: 265  SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
             D  +A +  VE   + +  ++   P+  +      +      E+++R  A+   E    
Sbjct: 727  EDTNKAYKVVVEFPNQIAESVEKIVPLEKKLHTPRIEGA----EDQVRTIAMQRAEQLYG 782

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                      +   +RL+ EL+ I    ++  +LI    +  +  +   VG  RGS   S
Sbjct: 783  T------PLPELVERRLNRELDAIINHGYAVLYLIAKKMVDKSLNDGYVVG-SRGSVGSS 835

Query: 385  VTAYALTITDIDPLRFSLL----------------------------------------- 403
              AY + IT+++PL                                              
Sbjct: 836  FIAYLMGITEVNPLPPHYFCSKCRYVEFIESNEYGSGYDLPVKICPSCGEPLNRNGQDIP 895

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE F+  +   +PD D++F  D +DE  R+++  +G + V +  T  ++ ++ A   V  
Sbjct: 896  FETFMGFEGDKVPDIDLNFSGDYQDEAHRFIETLFGKQHVYRAGTINTIASRTAFGFV-- 953

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
                                          ++   R+ R ++        ++  + G+ R
Sbjct: 954  ---------------------------RAYEEKSGRKVRKSEAE-----RLANAITGVKR 981

Query: 524  HASTHAAGIVIGDR--PLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKT 578
                H  G++I  +   +    P+     +    +  T F+ + I    L+K D LG   
Sbjct: 982  TTGQHPGGLMIIPKEYEVYDFTPIQHPANTKEAMVLTTHFDYESIHD-DLVKIDALGHDD 1040

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
             T ++     + +    +D   IP DD +T  L ++   LGI   E  G      G+   
Sbjct: 1041 PTFIK-----ILKDMTNIDPMKIPMDDEKTLKLFSSVEHLGIKPEEL-GTDVGTLGIPEF 1094

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQ 697
              + +  ++S  RP     +V  +   +G +  + +    I         VI  ++ +M 
Sbjct: 1095 GTQFVRGMLSETRPKSFAELVRISGLSHGTDVWLNNAQEWIRQKHATLSDVIACRDDIMN 1154

Query: 698  IAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
                  + +  +    + +R+  G   ++E + +K +                  +    
Sbjct: 1155 YLIKKGMNASKAFKIMENVRKGKGLSREDEEELKKLK--------------IPEWYIESC 1200

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------K 801
            K   Y F K+HA AY  ++++ A+ K H+P+ F AA  TL+ D  +             K
Sbjct: 1201 KRIKYLFPKAHATAYVSMAFRIAYFKVHHPLAFYAAYFTLKGDEFDLEAAMHGPEIVKKK 1260

Query: 802  IKKF-------------------CQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAA 841
            +++                      +        +P +VN      F + +N++      
Sbjct: 1261 LEELSGINDKDVRERAKETTLEVMLEMFLRGFSFLPVNVNKSHARLFLIEENKLRIPFNK 1320

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            +  +G   A  I+ A  +KPF SLED   R    K +    + LV 
Sbjct: 1321 LPNLGDNVAESIIAARREKPFTSLEDIVRRTKMNKSHIESFKKLVE 1366



 Score = 88.1 bits (217), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 38/99 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS +S L+  L ++  +++ ++    +IA+TD   +     F +      I+PI 
Sbjct: 283 VELHAHSKFSDLDSVLDIDEYVNRASSWGWKSIALTDHGVVQGIPYFYEACRKKDIKPIF 342

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
           G +  +       +    K         V++     G  
Sbjct: 343 GVEAYVVNDSEPVVIGMDKDIEIDQERYVIVDIETTGLH 381


>gi|168490797|ref|ZP_02714940.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC0288-04]
 gi|225853872|ref|YP_002735384.1| DNA polymerase III PolC [Streptococcus pneumoniae JJA]
 gi|183574875|gb|EDT95403.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC0288-04]
 gi|225723163|gb|ACO19016.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae JJA]
          Length = 1463

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 313/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNKIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGIEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|328944876|gb|EGG39036.1| DNA polymerase III PolC [Streptococcus sanguinis SK1087]
          Length = 1462

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 156/912 (17%), Positives = 312/912 (34%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEVMPPAIYEPLIAKEQIKDQEELQ 717

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 718  TIIRNLIEVGDRLGKPVLATGNVHYIDPEEEIYREIIVRSLGQGAMINRTIGHGENAQPA 777

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L   + I    + +   +    +         D  ++
Sbjct: 778  PLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTPFIDKAEE 837

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     +Q
Sbjct: 838  TVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQ 887

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 888  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMP 946

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 947  DKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGAEYAF 1006

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1007 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1035

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1036 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1092

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + I  DD     L +    LG
Sbjct: 1093 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNDISMDDAGVMALFSGTDILG 1146

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            + Q E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1147 VTQ-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1205

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M       L    + +  + +R+ +  KI EE   ++  +I+ 
Sbjct: 1206 KQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEE---ERNGYIAA 1262

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              +N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1263 MKENNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1317

Query: 796  ---------MDNVEKIK--------------------------KFCQDARQFNIQIMPPS 820
                        ++ +K                          +   +  +   +     
Sbjct: 1318 AKAFDIKTMSGGLDAVKRRMNEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFKFGKLD 1377

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +    +A+ G+G   AR ++ A  +  F S  +   R     L+ 
Sbjct: 1378 LYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR---GGLSS 1434

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1435 TLVEKMDDMGIL 1446



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 331 MPEGQKRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 390

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+          +V  V T      L  + + +  +  
Sbjct: 391 AGIQLIYGMEANIVEDRVPIVYNEVDMELSDATYVVFDVETT----GLSAVYNDLIQVAA 446

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D           E+ L  F++   D +
Sbjct: 447 SKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKP--LEQVLKEFQEFCQDSV 504

Query: 183 YVN 185
            V 
Sbjct: 505 LVA 507


>gi|298256053|ref|ZP_06979639.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada
            MDR_19A]
 gi|298502091|ref|YP_003724031.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|298237686|gb|ADI68817.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
          Length = 1463

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 313/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNKIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|301793541|emb|CBW35916.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV104]
          Length = 1463

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 313/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNEIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERND 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|223984468|ref|ZP_03634601.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
            12042]
 gi|223963539|gb|EEF67918.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
            12042]
          Length = 1451

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 169/968 (17%), Positives = 324/968 (33%), Gaps = 201/968 (20%)

Query: 48   DTNNLFSALEF-SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA 106
            D + L S      ++    G Q +   Q   D +  +K+  +          + ++    
Sbjct: 549  DADVLASVFMLMIKECKDRGAQTVADLQNLQDKKAFVKVMKR---------HVNVIAKNQ 599

Query: 107  EGYQRLIELVSRMYLL--------------DQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
             G + L +LV+                   ++     RI    +QE+    LI  +   +
Sbjct: 600  AGLKDLFKLVTLSNTDYLAVFGKANSKSSGEEFLAEPRILRRCIQELRGNLLI-GSACYN 658

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKL---FGDRLYVNLQRHRGYDRYRESQ----VVQLAY 205
            G +       + Q  E  +  +  +     +     ++ H   D  R  Q    +++ A 
Sbjct: 659  GEVFELAANRNQQDLEAAIAFYDYIEIQPLENYRPLVESHSLPDTDRLKQVLMRIIRTAK 718

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMA------VAHSTVVSQKDRP--RVTPDHYLKNR 257
                P+VAT +  +  +E+    D+ +       V H   +  K+R    VTPD +    
Sbjct: 719  KLNKPVVATGDVHYCKKEEKILRDIYIQTQGIGGVRHPLYIYDKERRSRTVTPDQHFLTT 778

Query: 258  SEMVSIFSDLPE---ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
            ++M+  F  + +   A E  VE     +  ++   P+  +      +      E +L+  
Sbjct: 779  NQMLQAFDWVEDRQLAYELVVEAPNAIADQVEKVLPVHDKLYTPVIEG----SEEKLKTI 834

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
                      +         +   +RL+ ELN I    F+  + I    ++ + ++   V
Sbjct: 835  CYENAHKTYGE------VLPEIVEKRLERELNSIIGNGFAVIYYISHLLVKKSNEDGYLV 888

Query: 375  GPGRGSGAGSVTAYALTITDIDPL------------------------------------ 398
            G  RGS   S  A    IT+++PL                                    
Sbjct: 889  G-SRGSVGSSFVATMSGITEVNPLIPHYVCPDCQHSEFITDGSVKSGFDLPAKKCPKCGA 947

Query: 399  -----RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
                    + FE FL  +   +PD D++F  + +D+   + +  +G + V +  T G++ 
Sbjct: 948  EMIVNGHDIAFETFLGFEGDKVPDIDLNFSGEYQDKAHAFTKTVFGEDHVFRAGTIGTVA 1007

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             K A   V       Y++                            E  L +    + L 
Sbjct: 1008 QKTAFGYVS-----GYAE----------------------------EMGLENMRQAQRLR 1034

Query: 514  ISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGL 568
            ++   EG+ R    H  GI++      +    P+     +  S+   T F+   I    +
Sbjct: 1035 LANGCEGVKRTTGQHPGGIIVIPSSMDVYDFTPVQYPANNPDSEWKTTHFDFHDIHD-NV 1093

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            +KFD LG    T ++     L Q    +D + IP +D ET  +  +   L        G 
Sbjct: 1094 LKFDILGHVDPTAMR-----LLQNISGIDPTTIPMNDPETMSIFNSVDALKADP-RVYGE 1147

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
                 G+     + +  ++ L RP     ++  +   +G +  ++    +         V
Sbjct: 1148 ATGAVGLPEFGTKFVRGILELTRPSTFSELLRISGLSHGTDVWLNNAKDLIDGGLTLHDV 1207

Query: 689  IIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
            I  ++ +M       +    S    + +R+  G K  E ++  KE        N I +  
Sbjct: 1208 IGCRDDIMTYLIEKGMPKKDSFFIMESVRKGKGLK-PEWIELMKE--------NNIPQWY 1258

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD-------- 797
              +  ++      Y F K+HA AY +++ + AW K H+P  +  A  TL  D        
Sbjct: 1259 IDSCLKI-----KYLFPKAHAVAYVMMAIRIAWFKVHHPYWYYVAFFTLRCDAYEIETMV 1313

Query: 798  -NVEKIKKFCQDARQF------------------------------NIQIMPPSVNTP-C 825
              ++ IK+   + +                                  +     ++    
Sbjct: 1314 KGMDAIKRRMDEIQAMKSNPETKRQVTKKDEDLYSMFEACLEMYARGYRFSNIDIDKSLA 1373

Query: 826  VDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
             +F+V       I      + G+G   A+ I+EA     F S ED  +R    +   R L
Sbjct: 1374 TEFRVLPDDLKTIIPPFTTVDGLGANVAKSIVEAREQGEFLSKEDLLNRTQLSQTLMRKL 1433

Query: 883  E-SLVFAG 889
            E     AG
Sbjct: 1434 EVLGTLAG 1441



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           V L  H++ S ++G   +  ++ +       AIA+TD      A   +Q   A  ++
Sbjct: 306 VELHCHTNKSEMDGVCEVEELVTQAFKWGHRAIAVTDHMA-CQAFPKAQSCAAKLLK 361


>gi|194397447|ref|YP_002036972.1| DNA polymerase III PolC [Streptococcus pneumoniae G54]
 gi|194357114|gb|ACF55562.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae G54]
          Length = 1463

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 313/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFESVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNKIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|168493969|ref|ZP_02718112.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC3059-06]
 gi|183576230|gb|EDT96758.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC3059-06]
 gi|332077575|gb|EGI88036.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae GA41301]
          Length = 1463

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 313/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNKIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|168576299|ref|ZP_02722182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae MLV-016]
 gi|307066950|ref|YP_003875916.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae AP200]
 gi|183577861|gb|EDT98389.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae MLV-016]
 gi|306408487|gb|ADM83914.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae AP200]
          Length = 1463

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 313/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFESVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNKIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|306826600|ref|ZP_07459906.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782]
 gi|304431208|gb|EFM34211.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782]
          Length = 1465

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/941 (16%), Positives = 321/941 (34%), Gaps = 184/941 (19%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+ ++          N  +  +       +    + V    G + + +LV
Sbjct: 586  FLRDAREKHGIKNLLQL--------NTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S   +    +   RI  + L +   EGL + T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLFLGTACSDGEVFDAVLTKGIDAAVDLAKYYDF 695

Query: 176  ------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                   ++   +   L + +         ++++      P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYRE 755

Query: 230  VL-------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVE 276
            ++         +  +    +  +P   P  + +  +EM+  F+ L +       +ENT +
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVENTQD 815

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
             A R   +  V   +   +I+K  + + +        KA            I        
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELT----YQKAFE----------IYGNPLPDI 861

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++
Sbjct: 862  IDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVN 920

Query: 397  PLRF-----------------------------------------SLLFERFLNPDRMSM 415
            P+                                            + FE FL  D   +
Sbjct: 921  PMPPHYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKV 980

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R 
Sbjct: 981  PDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYR- 1038

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                         D  VDRL   +    G+ R    H  GIV+ 
Sbjct: 1039 -----------------------------DAEVDRL---AAGAAGVKRTTGQHPGGIVVI 1066

Query: 536  DR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+             T FN   I++  ++K D LG    T+++K  D   
Sbjct: 1067 PNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG 1125

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD     L +    LG+   E  G    + G+       +  +V+  
Sbjct: 1126 -----IDPITIPADDPGVMALFSGTEILGVTP-EQIGTPTGMLGIPEFGTNFVRGMVNET 1179

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYS 706
             P     ++  +   +G +  + +   LI   +   + VI  ++ +M     A L    +
Sbjct: 1180 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGVATLKTVIGCRDDIMVYLMHAGLEPKMA 1239

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             +  + +R+ +  KI EE   ++  +I    +N +      +  ++      Y F K+HA
Sbjct: 1240 FTIMERVRKGLWLKISEE---ERNGYIDAMRENNVPDWYIESCGKI-----KYMFPKAHA 1291

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIK-------------- 803
            AAY +++ + A+ K H+P+ +  A  ++             ++ +K              
Sbjct: 1292 AAYVLMALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNE 1351

Query: 804  ------------KFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +  +   +        +  ++F++  + +     A++G+G   A
Sbjct: 1352 ATNVENDLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVA 1411

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + I++A  +  F S  +   R      +  ++E +   G L
Sbjct: 1412 KQIVKARQEGEFLSKMELRKR---GGASSTLVEKMDEMGIL 1449



 Score = 77.7 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V L  H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  
Sbjct: 334 MPEGQKRVELHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARK 393

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 394 AGIKAIF 400


>gi|307126490|ref|YP_003878521.1| DNA polymerase III subunit alpha, Gram-positive type [Streptococcus
            pneumoniae 670-6B]
 gi|306483552|gb|ADM90421.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae 670-6B]
 gi|332076720|gb|EGI87182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae GA17545]
          Length = 1463

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 313/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNKIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|225860309|ref|YP_002741818.1| DNA polymerase III PolC [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229634|ref|ZP_06963315.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada
            MDR_19F]
 gi|225727760|gb|ACO23611.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae Taiwan19F-14]
          Length = 1463

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 313/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNKIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|149006027|ref|ZP_01829756.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae SP18-BS74]
 gi|147762383|gb|EDK69344.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae SP18-BS74]
          Length = 1463

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 313/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNEIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|237649657|ref|ZP_04523909.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974]
 gi|237821357|ref|ZP_04597202.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974M2]
          Length = 1463

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 313/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNKIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYCSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|168485959|ref|ZP_02710467.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC1087-00]
 gi|183570911|gb|EDT91439.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC1087-00]
          Length = 1463

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 313/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNKIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYCSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 69/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L + T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSVFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|118586857|ref|ZP_01544291.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163]
 gi|290890494|ref|ZP_06553569.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429]
 gi|118432689|gb|EAV39421.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163]
 gi|290479890|gb|EFD88539.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429]
          Length = 1437

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 182/960 (18%), Positives = 335/960 (34%), Gaps = 207/960 (21%)

Query: 58   FSQKACA-AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F ++A    G+          D  ++ + T            + +LV    G + L +LV
Sbjct: 570  FLKEAEENYGVVYDEQLNEHTDDHESWRQTRP--------THLSILVKNQTGLKNLYKLV 621

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S   + +   +  R+  S L +    GL++ +G   G +           A +   +   
Sbjct: 622  SESNI-NYHYRVSRVPKSLLTKY-RNGLLVGSGDIGGNLFDTLAREGIDKAIELADS--- 676

Query: 177  LFGDRLYVNLQRHRGYDRYRES--------------QVVQLAYTHELPLVATNNSLFLSE 222
               +  Y+ +Q    Y    ES              Q V+LA   ELPLV T +  +L+E
Sbjct: 677  --INYDYIEVQPLENYQPRIESGFIKDRATLEKLIKQYVKLADILELPLVVTGDVHYLTE 734

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARR 280
            +D     +L+    +   +  +      D  +K    ++  F+ L +  A E  VE + +
Sbjct: 735  KDRIYRTILLNSKIARSAAAGETRYTLADLSMKKTQHLLDEFAFLGKEKAYEIVVENSHK 794

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             + ++    P+       + +      E+ LR KA A  +                 ++R
Sbjct: 795  INQMIDDVQPLKKGLSTPKIEG----SEDILRKKAYARAKEMYGN------PLPDLIQKR 844

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            LD ELN I    ++  ++I    +  + K+   VG  RGS   S+ A  + IT+++PL  
Sbjct: 845  LDRELNAIIGNGYAVIYVISQRLVDKSNKDGYIVG-SRGSVGSSLVATMMGITEVNPLPP 903

Query: 401  -----------------------------------------SLLFERFLNPDRMSMPDFD 419
                                                     ++ FE FL      +PD D
Sbjct: 904  HYRSVNGNYTEFVEDANVSSGFDLPEKRNPVDGTILIGDGQNIPFETFLGFKGDKVPDID 963

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +     Y +  +G   V +  T G++  K A   V    +             
Sbjct: 964  LNFSGDYQPIAHNYTKVMFGENNVFRAGTIGTVAEKTAYGMVKNYEE------------- 1010

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDR 537
                         A+D  +R+A            +S  + G+ R    HA GI+I   D 
Sbjct: 1011 -------------ANDVHYRKAEED--------RLSNGITGVKRTTGQHAGGIIIIPSDH 1049

Query: 538  PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+     D +S+   T  +   I    ++K D LG    TLL+   D       
Sbjct: 1050 DVYDFTPIQFPADDTKSNWKTTHLDYHSIHD-NVLKMDILGHDDPTLLRALQDM-----S 1103

Query: 595  KVDLSLIPFDDHETYHL--------------LTTKGTLGIFQLESSGMRQALEGMQPDCI 640
             +D   +P +D     L              ++  GTLGI +  ++ +R  LE  +P   
Sbjct: 1104 GIDPKTVPVNDPGVLSLFTSTKALHVTEDEIMSNTGTLGIPEFGTNFVRGMLEQTKPHNF 1163

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             +++ +  L     + N       KNG+  I ++    D ++ +     +      QI  
Sbjct: 1164 GELLQISGLSHGTNVWNGNADELIKNGQANIGTVIGTRDKIMTDLMSFGLESSDAFQI-- 1221

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
                      + +R+  G    E M+  K               +     + + K   Y 
Sbjct: 1222 ---------MEKVRKGKGI-SPEHMEILKAH-----------PKVPNWYIDSMLKI-QYM 1259

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN-----------VEKIKKFC--- 806
            F ++HAAAY + + + A+ K ++P  + AA  ++   +             K++      
Sbjct: 1260 FPRAHAAAYVMSALRIAFFKVYFPAIYYAAFFSVRAKDKTIDAVGITQGKTKVQALVKSY 1319

Query: 807  ---------------------QDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKG 844
                                  +A Q  I+        +   D+K+  N+I     A++G
Sbjct: 1320 RSRYNDLNKEESKTLAIYEIANEAWQRGIEFKMVDLYKSEAFDWKIDGNQIILPFVALQG 1379

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ 903
            +G   A+ I+ A A+  F S ED   R     +N+ +++ +     LD     ++M L  
Sbjct: 1380 LGDNVAKAIVAARAEHEFISKEDLAKR---GSVNKTLIDFMDQNHMLDGMTDANQMDLFA 1436



 Score = 61.9 bits (149), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H++ + L    S + +  + A   Q A+AITD  ++ +  E S  A   G++ I 
Sbjct: 324 IELHAHTTMTTLNAVNSASELFAQAAEWNQDALAITDNADVQAFPEASASAKKTGVKAIY 383

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +          N  +         +  + T
Sbjct: 384 GLEANYVEDGEAIAINTNREILKDCQYTIFDIET 417


>gi|257463693|ref|ZP_05628083.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
 gi|317061240|ref|ZP_07925725.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
 gi|313686916|gb|EFS23751.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
          Length = 1450

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 174/933 (18%), Positives = 335/933 (35%), Gaps = 175/933 (18%)

Query: 49   TNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
            T N+F  L F  K    GI  +   Q    +    + T           +I+LL    +G
Sbjct: 576  TGNMF--LIFLDKYLERGITKLSEMQEAFPVNTKKQNTR----------NIMLLAKNRQG 623

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM---LTGGS--SGPIDRAFFFNS 163
             + L  LVS  +L   G +  R+  S L++   EGL++   LTG S     +   +   +
Sbjct: 624  LENLNRLVSDAHLYHFGNRKPRVLKSTLKKY-REGLLVGCSLTGHSINDSELFHDYSTGN 682

Query: 164  SQVAEKRLLTFK--KLFGDRLYVNLQRHRG--------YDRYRESQVVQLAYTHELPLVA 213
                 +++  +   +L   + Y     + G        Y          LA    + +  
Sbjct: 683  IDRIPEKISFYDYIELLPRQAYAENIEYNGTGLISGNSYIEAMNQYFYSLAKEKGILVTG 742

Query: 214  TNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--AL 271
            ++N  +L  E+ +   +L+      V   K         Y ++  E++  FS L E  A 
Sbjct: 743  SSNVHYLDPEEAKIRTILL-YGSGMVHGAKAYKTDNG-FYFRSTGELLKEFSYLGEEVAK 800

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
            E  VE   +    ++V  PI   F     ++ ++        KA      R+    +   
Sbjct: 801  EIVVENTNKIVEEVEVIKPIPDGFYPPSIENAEETVREMTYEKAY-----RIYGNPL--- 852

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
               +   +RL+ ELN I    FS  +L     ++ +  N   VG  RGS   S+ A+ + 
Sbjct: 853  --PEIVAKRLERELNAIIGNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGSSLVAFMMG 909

Query: 392  ITDIDPL-----------------------------------------RFSLLFERFLNP 410
            IT+++ L                                          +S+ FE F+  
Sbjct: 910  ITEVNALYPHYICTNPDCKHSEFIEREGVGIDLPEKRCPKCNQIYKRDGYSIPFEVFMGF 969

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +   +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V +  +    
Sbjct: 970  NGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAAGYVRKYFE---- 1025

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
                       D    +S                      ++ +++K EG  +    H  
Sbjct: 1026 -----------DNGIAIS-------------------QAEVVRLAKKCEGAKKTTGQHPG 1055

Query: 531  GIVI--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            G+V+   D  + +  P+ +   D  SD   T ++   +++  L+K D LG    T ++  
Sbjct: 1056 GMVVVPSDHNIFEFCPVQKPANDEMSDSITTHYDYHVMDEQ-LVKLDILGHDDPTTIKLL 1114

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             ++       +D+  IP  D +T  + +   +LG+   E  G   A  G+       +  
Sbjct: 1115 QEYTG-----LDIYEIPLSDPDTLKIFSGTESLGVT-AEQIGSEVATFGIPEFGTPFVRQ 1168

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQI---AQL 701
            ++   RP     +V  +   +G +  ++     I         VI  ++ +M       +
Sbjct: 1169 MLLDTRPTTFAELVRISGLSHGTDVWLNNAQEFIRQKQATLSEVITVRDDIMNYLIDQGI 1228

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
              G +    + +R+    K  E   K  +          + +    + +    +   Y F
Sbjct: 1229 EKGTAFKIMEFVRKGKPSKDPEGWKKYSDL---------MKEKHVKDWYIESCRRIKYMF 1279

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV------------EKIKKF---- 805
             K HA AY +++ + A+ K HYP+ F AA ++ + ++              ++++     
Sbjct: 1280 PKGHAVAYVMMAIRIAYFKVHYPLAFYAAYLSRKAEDFNFETLGTPERARNRLEELSKEG 1339

Query: 806  ---------------CQDARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGTTT 849
                             +    +I+++P  +       F V  ++I   L A+ G+G   
Sbjct: 1340 KLDVKKKAEQALCEVMIEMEARHIELLPIDLYHSAGKKFLVEGDKIRVPLIALAGLGGAV 1399

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
              +I+E    + F S+EDF  R    +     +
Sbjct: 1400 IDNILEERQKESFISVEDFKKRTKVSQTIVEKM 1432



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 32/66 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS  S + G   +++I+ +       A+AITD   + S     + A   G++ I+
Sbjct: 337 VELHTHSKMSEMVGVTEVSDIIKRAKQYGHSAVAITDYGVVHSFPAAHKAASENGLKAIL 396

Query: 72  GCQLDI 77
           GC+  +
Sbjct: 397 GCEAYM 402


>gi|148994700|ref|ZP_01823804.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68]
 gi|168489751|ref|ZP_02713950.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae SP195]
 gi|147927100|gb|EDK78140.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68]
 gi|183571799|gb|EDT92327.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae SP195]
 gi|332075131|gb|EGI85601.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae GA17570]
          Length = 1463

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 312/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFINKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNKIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 83.5 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGIEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|331265607|ref|YP_004325237.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5]
 gi|326682279|emb|CBY99896.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5]
          Length = 1463

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 158/927 (17%), Positives = 314/927 (33%), Gaps = 168/927 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALEN--TVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L     +E     + I +    +         D  ++
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEDLARKLVIENPNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     +Q
Sbjct: 839  TVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQ 888

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 889  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMP 947

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 948  NKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAF 1007

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1008 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1036

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1037 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1093

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D       ++D + IP DD     L +    LG
Sbjct: 1094 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SRIDPNEIPMDDEGVMALFSGTDVLG 1147

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            +   E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1148 VTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1206

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I  
Sbjct: 1207 KQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEA 1263

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
               N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1264 MKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1318

Query: 796  MDNVE-KIK----------------------------------KFCQDARQFNIQIMPPS 820
                + K                                    +   +  +   +     
Sbjct: 1319 AKAFDIKTMGAGLDAIKRRMEEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFKFGKLD 1378

Query: 821  VNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R     L+ 
Sbjct: 1379 LYRSDATEFLIDGDTLIPPFVAMDGLGENVAKQLVRARQEGEFLSKTELRKR---GGLSS 1435

Query: 880  RVLESLVFAGALDCF-GYSRMQLLQSL 905
             ++E +   G L      +++ L   L
Sbjct: 1436 TLVEKMDEMGILSNMPEDNQLSLFDDL 1462



 Score = 81.2 bits (199), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVAIAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G         +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGI--TYDHVKNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|303259383|ref|ZP_07345360.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293]
 gi|303261138|ref|ZP_07347087.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292]
 gi|303263466|ref|ZP_07349389.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397]
 gi|303265758|ref|ZP_07351656.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457]
 gi|303267811|ref|ZP_07353613.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458]
 gi|302637975|gb|EFL68461.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292]
 gi|302639317|gb|EFL69775.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293]
 gi|302642507|gb|EFL72852.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458]
 gi|302644666|gb|EFL74915.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457]
 gi|302647239|gb|EFL77463.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397]
          Length = 1463

 Score =  403 bits (1035), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 313/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDGAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNEIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERND 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|15900208|ref|NP_344812.1| DNA polymerase III PolC [Streptococcus pneumoniae TIGR4]
 gi|111658314|ref|ZP_01409003.1| hypothetical protein SpneT_02000504 [Streptococcus pneumoniae TIGR4]
 gi|21263563|sp|Q97SQ2|DPO3_STRPN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|14971745|gb|AAK74452.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae TIGR4]
          Length = 1463

 Score =  403 bits (1035), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 313/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFESVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNKIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYCSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|327468385|gb|EGF13870.1| DNA polymerase III PolC [Streptococcus sanguinis SK330]
          Length = 1462

 Score =  403 bits (1035), Expect = e-109,   Method: Composition-based stats.
 Identities = 157/912 (17%), Positives = 314/912 (34%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEVMPPAIYEPLIAKEQIKDQEELQ 717

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 718  TIIRNLIEVGDRLCKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGENAQPA 777

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L   + I    + +   +    +         D  ++
Sbjct: 778  PLPKAHFRTTNEMLDEFTFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTPFIDKAEE 837

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     +Q
Sbjct: 838  TVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQ 887

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 888  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMS 946

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 947  DKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGSEYAF 1006

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1007 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1035

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1036 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1092

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG
Sbjct: 1093 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNDIPMDDTGVMALFSGTDILG 1146

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            + Q E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1147 VTQ-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1205

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M       L    + +  + +R+ +  KI EE   ++  +I+ 
Sbjct: 1206 KQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEE---ERNGYIAA 1262

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              +N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1263 MKENNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1317

Query: 796  ---------MDNVEKIK--------------------------KFCQDARQFNIQIMPPS 820
                        ++ +K                          +   +  +   +     
Sbjct: 1318 AKAFDIKTMSGGLDAVKRRMNEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFKFGKLD 1377

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F + ++ +    +A+ G+G   AR ++ A  +  F S  +   R     L+ 
Sbjct: 1378 LYKSHATEFLIEEDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR---GGLSS 1434

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1435 TLVEKMDDMGIL 1446



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 331 MPEGQKRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 390

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+          +V  V T      L  + + +  +  
Sbjct: 391 AGIQLIYGMEANIVEDRVPIVYNEVDMELSDATYVVFDVETT----GLSAVYNDLIQVAA 446

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D           E+ L  F++   D +
Sbjct: 447 SKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKP--LEQVLKEFQEFCQDSV 504

Query: 183 YVN 185
            V 
Sbjct: 505 LVA 507


>gi|320093660|ref|ZP_08025539.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 178 str.
            F0338]
 gi|319979392|gb|EFW10875.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 178 str.
            F0338]
          Length = 599

 Score =  403 bits (1035), Expect = e-109,   Method: Composition-based stats.
 Identities = 147/560 (26%), Positives = 236/560 (42%), Gaps = 60/560 (10%)

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            L GL RH   H  G+V+ D+P+S + P+         V Q++ +  E AGL+KFD LGL 
Sbjct: 1    LAGLPRHMGIHPGGMVLTDQPVSSVCPISWGSVPGRSVLQWDKEDCEDAGLVKFDLLGLG 60

Query: 578  TLTLLQKSLD-----------------FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
             L+ L+ + D                  L +RG+ + L  +P +D   Y LL    T+G+
Sbjct: 61   MLSALRLAFDRLAGAPEGEPWGRRSAPLLGRRGLPIGLHTLPQEDPGVYDLLCAADTVGV 120

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPLI 678
            FQ+ES      L  ++P C  DI+  V+L RPGPI       +  R+ G+E++  +HPL+
Sbjct: 121  FQVESRAQMSTLPRLKPRCFYDIVVEVALIRPGPIQGGSVTPFLRRRAGEEEVSYLHPLL 180

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEMDKQKERFISGAS 737
            +P L +T GV ++QEQ+M+IA   +G++ ++AD LRRA+G K   E ++  +   + G  
Sbjct: 181  EPALAKTLGVPLFQEQLMRIAADAAGFTPAQADRLRRALGAKRGVERVEGLRPALMEGMG 240

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            + GI       I E L  FAD+GF +SHA ++A I Y +AW+K   P  F AA +  +  
Sbjct: 241  RRGIDAATGAAIVEQLKGFADFGFPESHAFSFAHIVYASAWLKLRAPEHFYAALLACQPM 300

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------------------------ 833
                      DAR+  +++ PP VN   V   V +                         
Sbjct: 301  GFYSPSSLVHDARRHGVRVAPPDVNHSRVGAVVEEADEGEGGVPRAPEPVPQAVPLDVDP 360

Query: 834  --RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               +   L +I G+G    R    A  + P+ S+ D   R        + LE L  AGAL
Sbjct: 361  RLAVRIGLGSIAGLGAAAERT-ATARGEGPYSSVGDLARRARL---GEKDLERLAHAGAL 416

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
               G SR + + S        +            +         D          ++   
Sbjct: 417  ASLGASRREGMWS-AGALGAPRGPVGADGGWQPALPG------IDPAPAPDLPAMDAVEE 469

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +    G     HP  + +  L   G            G  + +A ++  +Q+  T  
Sbjct: 470  LRADTESTGLTTGDHPFALVRAHLDP-GALPVSALHGCDDGAIVSVAGLITHRQRPPTAA 528

Query: 1012 GSRIGWVTFSEPAKEYEANF 1031
            G+   ++T  + +       
Sbjct: 529  GT--VFLTLEDESGMVNVTC 546


>gi|39939077|ref|NP_950843.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
 gi|39722186|dbj|BAD04676.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
          Length = 625

 Score =  403 bits (1035), Expect = e-109,   Method: Composition-based stats.
 Identities = 186/658 (28%), Positives = 326/658 (49%), Gaps = 55/658 (8%)

Query: 18  SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDI 77
           S YSLL+   SL  ++ K   +    +A++D +NL+    F +      I+ I+G +++ 
Sbjct: 9   SFYSLLQSLNSLETLVQKAKENDYDFVALSD-DNLYGMPTFLKLCHNYQIKSILGLKINF 67

Query: 78  DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
             ++ L              ++++     +G + LI++ + +    + +++ +I L+ + 
Sbjct: 68  LHKNQL-------------ATLLIYAKNDQGIKNLIQISTII----KNEETPQITLNQIA 110

Query: 138 EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE 197
            +G + L  L  G +   D  FF +      +     +K+F D L + +     +     
Sbjct: 111 HLG-KDLFALIPGENPFFDDMFFRDQKDKFFQIANQLQKIF-DELVLGISYQNSFLELLS 168

Query: 198 SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY--LK 255
             ++  A   ++P V  N + + + +    + +L  + +     Q D   +T D++    
Sbjct: 169 ENIIDFANHFQIPYVPINKTCYDTFQAQPTYQILAQMENKKNDDQTDLSFLTKDNFDSAY 228

Query: 256 NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK----EEENEL 311
           N     ++F+ L + +           F ++    +  + +     D  +      +  L
Sbjct: 229 NAQTHKAMFAYLKKLI-----------FSIKYQNYLPQKMLLPSFVDFLQPQKITAKEYL 277

Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
           +  +  GL     Q    K      Y+QRLD EL +IA M++  YFLIV D +++AKK  
Sbjct: 278 KQISYEGLR----QYIDFKNPKYTKYQQRLDQELQIIADMEYDNYFLIVGDVVRYAKKQG 333

Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
           I VGPGRGS +GS+  + L IT+IDPL++ L+FERFLNP R +MPD D+DF ++ RD +I
Sbjct: 334 ILVGPGRGSSSGSLVCFCLQITEIDPLQYDLIFERFLNPQRKTMPDIDLDFPENTRDLII 393

Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DPAHPVSLQ 490
           +YV  KYG + VA IITFG   ++ A+             ++ L K +P         + 
Sbjct: 394 QYVCQKYGTKHVASIITFGRFVSQKAI-------------INELVKFMPTVKEFQTKRVL 440

Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
           A  D     +    D  + +LL ++  +EG+ R   TH AGI++   PL Q++P+ +   
Sbjct: 441 AYLDKKSTYQKETLDLQMKKLLTMASYIEGIPRFTGTHPAGIILSQMPLDQIIPLQKGTH 500

Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
           ++L  TQ+   ++E  GL+K DFLGL++LTL+ K +  + +      L  IP +D +T+ 
Sbjct: 501 NNLQQTQWEASFLESIGLLKIDFLGLRSLTLMNKMVLAIQKTNPHFGLFKIPLNDTKTFE 560

Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
           LL    T+GIFQLES   +  L+ M P   ED+IAL++L RPGPID+  ++   ++ K
Sbjct: 561 LLQQGKTIGIFQLESYNAKIFLQKMMPQKFEDLIALLALNRPGPIDSFNMFLKNRHQK 618


>gi|182683255|ref|YP_001835002.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|303255179|ref|ZP_07341253.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455]
 gi|182628589|gb|ACB89537.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|301801215|emb|CBW33889.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV200]
 gi|302597812|gb|EFL64884.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455]
          Length = 1463

 Score =  403 bits (1035), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 313/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDGAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNEIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERND 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|116491013|ref|YP_810557.1| DNA polymerase III, alpha subunit ( type) [Oenococcus oeni PSU-1]
 gi|116091738|gb|ABJ56892.1| DNA polymerase III, alpha subunit (gram-positive type) [Oenococcus
            oeni PSU-1]
          Length = 1437

 Score =  403 bits (1035), Expect = e-109,   Method: Composition-based stats.
 Identities = 182/960 (18%), Positives = 335/960 (34%), Gaps = 207/960 (21%)

Query: 58   FSQKACA-AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F ++A    G+          D  ++ + T            + +LV    G + L +LV
Sbjct: 570  FLKEAEENYGVVYDEQLNEHTDDHESWRQTRP--------THLSILVKNQTGLKNLYKLV 621

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S   + +   +  R+  S L +    GL++ +G   G +           A +   +   
Sbjct: 622  SESNI-NYHYRVSRVPKSLLTKY-RNGLLVGSGDIGGNLFDTLAREGIDKAIELADS--- 676

Query: 177  LFGDRLYVNLQRHRGYDRYRES--------------QVVQLAYTHELPLVATNNSLFLSE 222
               +  Y+ +Q    Y    ES              Q V+LA   ELPLV T +  +L+E
Sbjct: 677  --INYDYIEVQPLENYQPRIESGFIKDRATLEKLIKQYVKLADILELPLVVTGDVHYLTE 734

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARR 280
            +D     +L+    +   +  +      D  +K    ++  F+ L +  A E  VE + +
Sbjct: 735  KDRIYRTILLNSKIARSAAAGETRYTLADLSMKKTQHLLDEFAFLGKEKAYEIVVENSHK 794

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             + ++    P+       + +      E+ LR KA A  +                 ++R
Sbjct: 795  INQMIDDVQPLKKGLSTPKIEG----SEDILRKKAYARAKEMYGN------PLPDLIQKR 844

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            LD ELN I    ++  ++I    +  + K+   VG  RGS   S+ A  + IT+++PL  
Sbjct: 845  LDRELNAIIGNGYAVIYVISQRLVDKSNKDGYIVG-SRGSVGSSLVATMMGITEVNPLPP 903

Query: 401  -----------------------------------------SLLFERFLNPDRMSMPDFD 419
                                                     ++ FE FL      +PD D
Sbjct: 904  HYRSVNGNYTEFVEDANVSSGFDLPEKRNPVDGTILIGDGQNIPFETFLGFKGDKVPDID 963

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +     Y +  +G   V +  T G++  K A   V    +             
Sbjct: 964  LNFSGDYQPIAHNYTKVMFGENNVFRAGTIGTVAEKTAYGMVKNYEE------------- 1010

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDR 537
                         A+D  +R+A            +S  + G+ R    HA GI+I   D 
Sbjct: 1011 -------------ANDVHYRKAEED--------RLSNGITGVKRTTGQHAGGIIIIPSDH 1049

Query: 538  PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+     D +S+   T  +   I    ++K D LG    TLL+   D       
Sbjct: 1050 DVYDFTPIQFPADDTKSNWKTTHLDYHSIHD-NVLKMDILGHDDPTLLRALQDM-----S 1103

Query: 595  KVDLSLIPFDDHETYHL--------------LTTKGTLGIFQLESSGMRQALEGMQPDCI 640
             +D   +P +D     L              ++  GTLGI +  ++ +R  LE  +P   
Sbjct: 1104 GIDPKTVPVNDPGVLSLFTSTKALHVTEDEIMSNTGTLGIPEFGTNFVRGMLEQTKPHNF 1163

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             +++ +  L     + N       KNG+  I ++    D ++ +     +      QI  
Sbjct: 1164 GELLQISGLSHGTNVWNGNADELIKNGQANIGTVIGTRDKIMTDLMSFGLESSDAFQI-- 1221

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
                      + +R+  G    E M+  K               +     + + K   Y 
Sbjct: 1222 ---------MEKVRKGKGI-SPEHMEILKAH-----------PKVPNWYIDSMLKI-QYM 1259

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN-----------VEKIKKFC--- 806
            F ++HAAAY + + + A+ K ++P  + AA  ++   +             K++      
Sbjct: 1260 FPRAHAAAYVMSALRIAFFKVYFPAIYYAAFFSVRAKDKTIDAVGITQGKTKVQALVRSY 1319

Query: 807  ---------------------QDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKG 844
                                  +A Q  I+        +   D+K+  N+I     A++G
Sbjct: 1320 RSRYNDLNKEESKTLAIYEIANEAWQRGIEFKMVDLYKSEAFDWKIDGNQIILPFVALQG 1379

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ 903
            +G   A+ I+ A A+  F S ED   R     +N+ +++ +     LD     ++M L  
Sbjct: 1380 LGDNVAKAIVAARAEHEFISKEDLAKR---GSVNKTLIDFMDQNHMLDGMTDANQMDLFA 1436



 Score = 61.9 bits (149), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H++ + L    S + +  + A   Q A+AITD  ++ +  E S  A   G++ I 
Sbjct: 324 IELHAHTTMTTLNAVNSASELFAQAAEWNQDALAITDNADVQAFPEASASAKKTGVKAIY 383

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + +          N  +         +  + T
Sbjct: 384 GLEANYVEDGEAIAINTNREILKDCQYTIFDIET 417


>gi|19746871|ref|NP_608007.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS8232]
 gi|24418360|sp|Q8NZB5|DPO3_STRP8 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|19749113|gb|AAL98506.1| DNA polymerase III alpha chain [Streptococcus pyogenes MGAS8232]
          Length = 1465

 Score =  403 bits (1035), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/941 (16%), Positives = 322/941 (34%), Gaps = 184/941 (19%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+ ++          N  +  +       +    + V    G + + +LV
Sbjct: 586  FLRDAREKHGIKNLLQL--------NTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDF 695

Query: 176  ------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                   ++   +   L + +         ++++    + P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYRE 755

Query: 230  VL-------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE------NTVE 276
            ++         +  +    +  +P   P  + +  +EM+  F+ L + L       NT +
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVQNTQD 815

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
             A R   +  V   +   +I+K  + + +        KA            I        
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELT----YQKAFE----------IYGNPLPDI 861

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++
Sbjct: 862  IDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVN 920

Query: 397  PLRF-----------------------------------------SLLFERFLNPDRMSM 415
            P+                                            + FE FL  D   +
Sbjct: 921  PMPPHYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKV 980

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R 
Sbjct: 981  PDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYR- 1038

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                         D  VDRL   +    G+ R    H  GIV+ 
Sbjct: 1039 -----------------------------DAEVDRL---AAGAAGVKRTTGQHPGGIVVI 1066

Query: 536  DR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+             T FN   I++  ++K D LG    T+++K  D   
Sbjct: 1067 PNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG 1125

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD     L +    LG+   E  G    + G+       +  +V+  
Sbjct: 1126 -----IDPITIPADDPGVMALFSGTEILGVTP-EQIGTPTGMLGIPEFGTNFVRGMVNET 1179

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYS 706
             P     ++  +   +G +  + +   LI   +   + VI  ++ +M     A L    +
Sbjct: 1180 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMA 1239

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             +  + +R+ +  KI EE   ++  +I    +N +      +  ++      Y F K+HA
Sbjct: 1240 FTIMERVRKGLWLKISEE---ERNGYIDAMRENNVPDWYIESCGKI-----KYMFPKAHA 1291

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIK-------------- 803
            AAY +++ + A+ K H+P+ +  A  ++             ++ +K              
Sbjct: 1292 AAYVLMALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNE 1351

Query: 804  ------------KFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +  +   +        +  ++F++  + +     A++G+G   A
Sbjct: 1352 ATNVENDLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVA 1411

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + I++A  +  F S  +   R      +  ++E +   G L
Sbjct: 1412 KQIVKARQEGEFLSKMELRKR---GGASSTLVEKMDEMGIL 1449



 Score = 77.7 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V L  H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  
Sbjct: 334 MPEGQKRVELHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARK 393

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 394 AGIKAIF 400


>gi|149011144|ref|ZP_01832449.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP19-BS75]
 gi|147764780|gb|EDK71710.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP19-BS75]
          Length = 1463

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 155/912 (16%), Positives = 307/912 (33%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALEN--TVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L     +E     + I +    +         D  ++
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFVDKAEE 838

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     +Q
Sbjct: 839  TVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQ 888

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 889  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMP 947

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 948  HKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAF 1007

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1008 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1036

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1037 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1093

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG
Sbjct: 1094 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNKIPMDDEGVMALFSGTDVLG 1147

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            +   E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1148 VTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1206

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I  
Sbjct: 1207 KQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEA 1263

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
               N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1264 MKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1318

Query: 796  MDNVE-KIK----------------------------------KFCQDARQFNIQIMPPS 820
                + K                                    +   +  +   +     
Sbjct: 1319 AKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKFGKLD 1378

Query: 821  VNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R     L+ 
Sbjct: 1379 LYCSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---GGLSS 1435

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1436 TLVEKMDEMGIL 1447



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|307705682|ref|ZP_07642529.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis SK597]
 gi|307620762|gb|EFN99851.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis SK597]
          Length = 1463

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 155/912 (16%), Positives = 308/912 (33%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  + G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACAEGEVFDAVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQIKDTEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALEN--TVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L     +E     + I +    +         D  ++
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENPNALADIFEPVEVVKGDLYTPFIDKAEE 838

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     +Q
Sbjct: 839  TVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQ 888

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 889  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMP 947

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 948  NKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQASAHLDVRDIFGEEYAF 1007

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1008 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1036

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1037 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1093

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG
Sbjct: 1094 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNEIPMDDEGVMALFSGTDVLG 1147

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            +   E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1148 VTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1206

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I  
Sbjct: 1207 KQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEA 1263

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
               N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1264 MKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1318

Query: 796  MDNVE-KIK----------------------------------KFCQDARQFNIQIMPPS 820
                + K                                    +   +  +   +     
Sbjct: 1319 AKAFDIKTMGAGLDAIKRRMEEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFKFGKLD 1378

Query: 821  VNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R     L+ 
Sbjct: 1379 LYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---GGLSS 1435

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1436 TLVEKMDEMGIL 1447



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|315924481|ref|ZP_07920702.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622185|gb|EFV02145.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 1442

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 182/960 (18%), Positives = 317/960 (33%), Gaps = 197/960 (20%)

Query: 38   ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
                   AI D  ++ SA  F +     G+     C    D+   +++    KT  P   
Sbjct: 564  DMGHHHRAIDD--SICSAKIFVRLM---GLAEKQHCDRAADLNRLMRLEQIIKTERP--Y 616

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             +++     +G Q L +LVS  ++ D   +  RI  S LQ+   + L++ +   +G +  
Sbjct: 617  HVIIYAKDQDGLQALYDLVSASHV-DYFYKKPRIPKSLLQK-KRKHLLIGSACEAGELYT 674

Query: 158  AFFFNSSQVAEKRLLTFKKLFG-----DRLYVNLQRHRGYDRYRE--SQVVQLAYTHELP 210
            A   N +    + +L F   +      +  Y+        D   E   +++ L       
Sbjct: 675  AVKENWNDARLRPILDFYDYYEVQPLGNNAYLMRNGDLTRDDLIEINKRIIALGRQENKL 734

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE- 269
            +VAT +  F++  D +   +L A        +       P  Y  +  EM+  F  LP+ 
Sbjct: 735  VVATGDVHFVAPTDAQYRQILQAGQGYRDADE------QPPLYYHSTREMLDEFDYLPDD 788

Query: 270  -ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
             A E  V   R+ + ++    P+     +     + +  ++E+RN   A  +        
Sbjct: 789  AAYELVVTNTRKVADLIDDVKPV----PDGTFPPVIEGSDDEIRNSVYANAKELYGDPL- 843

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                       R+  EL  I    +S  +LI    ++ +      VG  RGS   S+ A 
Sbjct: 844  -----PDIVADRIHKELTSIIGNGYSVLYLIAEKLVKHSLDCGYLVG-SRGSVGSSLVAM 897

Query: 389  ALTITDIDPLR-----------------------------------------FSLLFERF 407
               IT+++ L                                          F + FE F
Sbjct: 898  LCGITEVNSLPPHYICPECKHVEWFDSTKVGVGPDLPDKICPECGHALNKDGFDIPFETF 957

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            L       PD D++F  D + E   Y +  +G  +V +  T  +L  K A   V   L  
Sbjct: 958  LGFKGDKEPDIDLNFSGDNQSEAHHYTEVIFGEGKVFRAGTIATLADKTAYGYVKNYL-- 1015

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                                           R   ++   +DRL+E      G+ R    
Sbjct: 1016 -----------------------------EERGIVVSHAEMDRLIE---GTAGVTRTTGQ 1043

Query: 528  HAAGIVIGDRP--LSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            H  G+++  +   ++Q  P+     D  S    T F+   IE   L+K D LG    T+L
Sbjct: 1044 HPGGVMVVPKDKEITQFTPVQYPANDRDSGTLTTHFDYHSIE-GRLLKLDILGHDDPTML 1102

Query: 583  QKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLESSGM 628
            +   D        VD + I  DD +   L                   T GI +  +S  
Sbjct: 1103 RMLKDITG-----VDPTTIALDDPKIIGLFEGTDSLDLIDDDFDVPLGTCGIPEFGTSFA 1157

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            RQ +    PD   D+I L  L     +                 +   LI+      + V
Sbjct: 1158 RQMVLDAHPDSYADLIRLSGLSHGTDVWLG--------------NAQTLIENGTATLKEV 1203

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I  ++ +M     + G +   A  +   + K             +    +  + K     
Sbjct: 1204 ICCRDDIMLGLISM-GLAPERAFWIMEHVRKGKG----------LLDDEEPYMRKNNVPE 1252

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------- 800
             +    K   Y F K+HAAAY +++ + A+ K +YP  + AA  ++     +        
Sbjct: 1253 WYIDSCKKIKYMFPKAHAAAYVMMAVRIAYYKVYYPPAYYAAWFSIRAKEFDLGVMKAGK 1312

Query: 801  -KIKKFCQDARQFNIQIMPPSVN-------------------------TPCVDFKVGDNR 834
              + +   + +    +      N                         +    F +    
Sbjct: 1313 EAVVRKMNEIKAQGNKASNKDSNLYTSLELAWEMFCRGYSFANVDIYKSHYRYFTLDGKT 1372

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +   L A+ G+G   A+ I E +  KPF S ED  +R    K N   L +    G L   
Sbjct: 1373 LIPPLTAVDGMGEVVAKSIYEEAKRKPFMSREDMQNRAHVNKANMDALAAF---GCLSEL 1429



 Score = 68.5 bits (166), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 33/83 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS YS ++    +  I+ +          ITD   + +  E  ++    GI+ + 
Sbjct: 342 VELHMHSQYSAMDAVSKVKKIVRQAVDFGHDIFGITDHGVVQAYPEIMKETKGKGIKVLY 401

Query: 72  GCQLDIDMQDNLKMTNQGKTPFP 94
           G +  +   D   +T     PF 
Sbjct: 402 GLEGYLVNDDIRIITGDQDEPFG 424


>gi|94991249|ref|YP_599349.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10270]
 gi|166217452|sp|Q1JEV4|DPO3_STRPD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94544757|gb|ABF34805.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10270]
          Length = 1465

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 158/941 (16%), Positives = 321/941 (34%), Gaps = 184/941 (19%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+ ++          N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKDAREKHGIKNLLQL--------NTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDF 695

Query: 176  ------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                   ++   +   L + +         ++++      P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYRE 755

Query: 230  VL-------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVE 276
            ++         +  +    +  +P   P  + +  +EM+  F+ L +       +ENT +
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVENTQD 815

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
             A R   +  V   +   +I+K  + + +        KA            I        
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELT----YQKAFE----------IYGNPLPDI 861

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++
Sbjct: 862  IDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVN 920

Query: 397  PLRF-----------------------------------------SLLFERFLNPDRMSM 415
            P+                                            + FE FL  D   +
Sbjct: 921  PMPPHYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKV 980

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R 
Sbjct: 981  PDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYR- 1038

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                         D  VDRL   +    G+ R    H  GIV+ 
Sbjct: 1039 -----------------------------DAEVDRL---AAGAAGVKRTTGQHPGGIVVI 1066

Query: 536  DR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+             T FN   I++  ++K D LG    T+++K  D   
Sbjct: 1067 PNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG 1125

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD     L +    LG+   E  G    + G+       +  +V+  
Sbjct: 1126 -----IDPITIPADDPGVMALFSGTEVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVNET 1179

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYS 706
             P     ++  +   +G +  + +   LI   +   + VI  ++ +M     A L    +
Sbjct: 1180 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMA 1239

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             +  + +R+ +  KI EE   ++  +I    +N +      +  ++      Y F K+HA
Sbjct: 1240 FTIMERVRKGLWLKISEE---ERNGYIDAMRENNVPDWYIESCGKI-----KYMFPKAHA 1291

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIK-------------- 803
            AAY +++ + A+ K H+P+ +  A  ++             ++ +K              
Sbjct: 1292 AAYVLMALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNE 1351

Query: 804  ------------KFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +  +   +        +  ++F++  + +     A++G+G    
Sbjct: 1352 ATNVENDLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVG 1411

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + I++A  +  F S  +   R      +  ++E +   G L
Sbjct: 1412 KQIVKARQEGEFLSKMELRKR---GGASSTLVEKMDEMGIL 1449



 Score = 75.0 bits (183), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  
Sbjct: 334 MPEGQKRVEFHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARK 393

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 394 AGIKAIF 400


>gi|149017968|ref|ZP_01834427.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP23-BS72]
 gi|147931532|gb|EDK82510.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP23-BS72]
          Length = 1463

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 312/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFINKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNKIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYCSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|148983680|ref|ZP_01816999.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP3-BS71]
 gi|147923827|gb|EDK74939.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP3-BS71]
 gi|301799415|emb|CBW31952.1| DNA polymerase III PolC-type [Streptococcus pneumoniae OXC141]
          Length = 1463

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 313/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNKIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERND 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYCSQTTEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|169350436|ref|ZP_02867374.1| hypothetical protein CLOSPI_01204 [Clostridium spiroforme DSM 1552]
 gi|169292756|gb|EDS74889.1| hypothetical protein CLOSPI_01204 [Clostridium spiroforme DSM 1552]
          Length = 1439

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 156/927 (16%), Positives = 291/927 (31%), Gaps = 173/927 (18%)

Query: 81   DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG 140
            D  K+T+           +  L     G + + +LVS            RI    L E  
Sbjct: 577  DVCKLTSDDVYKIVYPYHMCALALNKTGLKNMFKLVSEANTK-YFHGESRIPKERL-EYY 634

Query: 141  TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL----FGDRLY-VNLQRHRGYDRY 195
             EGL+  +   +  +  A    S +  E  +  +  +      D  + +   + +  D  
Sbjct: 635  REGLLFGSSCYNSDVFEAALNLSDERLENAMKFYDYIEIQPLEDYFHLIERGKLQDKDEL 694

Query: 196  R--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-----VAH--STVVSQKDRP 246
                 ++V  A      +VAT +  FL  +D    DV ++     + H    +  +++  
Sbjct: 695  IKSLQRIVTCAKKLNKIIVATGDVHFLDVKDRIFRDVFISNPTIGIGHKAHPLCDRRNPK 754

Query: 247  RVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               P  YL+   EM+  +  L   E  E  V    + + +++   PI  +    + D   
Sbjct: 755  AKNPCQYLRTTDEMLECYPYLSKEETFEYVVTNTNKIADMVEEIKPIHDKLFTPKIDGA- 813

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L+                          +RL+ EL+ I +  F   + I    +
Sbjct: 814  ---DENLKKLCYETAHKTYGN------PLPSIVEKRLEKELSNIIKHGFGVIYYISHLLV 864

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------- 399
            + +  +   VG  RGS   S  A    IT+++PL                          
Sbjct: 865  KKSNDDGYLVG-SRGSVGSSFVATMSGITEVNPLPPHYVCPNCTYSEFLEEGTIADGYDL 923

Query: 400  ----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                             ++ FE FL  +   +PD D++F  + +     + +  +G + V
Sbjct: 924  EDKPCPKCGTIMKGEGHNIPFETFLGFNADKVPDIDLNFSGEYQANAHAFTKEIFGEDHV 983

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
             +  T  ++  K A           Y       +L+  D +                   
Sbjct: 984  FRAGTISTVAEKTA-----------YGYAKGYAELMGKDQSI------------------ 1014

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDVRS---DLPVTQF 558
                   L  I+    G+ R    H  GI++  R +      P              T F
Sbjct: 1015 ---RSAELERIAAGCGGVKRTTGQHPGGIIVIPRDMDVFDFTPYQYPADDLSATWKTTHF 1071

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
            +   I    ++KFD LG    T+++   D        VD   IP +D +   L T+   L
Sbjct: 1072 DFHAIHD-NVLKFDILGHVDPTVIRALQDLTG-----VDPKTIPTNDKKVMSLFTSSKAL 1125

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPL 677
            G   LE  G +    G+       +  ++   +P    ++V+ +   +G +  + +   L
Sbjct: 1126 GC-DLEFIGCKSGALGLPEFGTNFVRGMLDQTQPKSFSDLVIISGLSHGTDVYLGNAESL 1184

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            I         VI  ++ +M            +    + +R+                F  
Sbjct: 1185 IKSGTCTLSEVIGCRDDIMVYLIEKGLPNKDAFDIMECVRKGKST----------AVFPK 1234

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               +  + K      +    K   Y F K+HA AY + + + AW K +YP E+ A   + 
Sbjct: 1235 MQYEELMKKHNVPQWYIESCKKIKYMFPKAHAVAYVLSAIRVAWWKVYYPREYYAVYFST 1294

Query: 795  EMDNVEKIKKFCQ------------------------------------DARQFNIQIMP 818
               +  +I+   Q                                    +  +      P
Sbjct: 1295 RC-DFYEIETLIQGKDAIMARREEIAQLKAQRSASNKEEGLWDVFEIALEMIERGYHFNP 1353

Query: 819  PSVNTP-CVDFKVGD---NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
             S+       F +       +    +A+  +G   A+ +++A    PF S ED   R   
Sbjct: 1354 ISLQYSQASKFILDPNDEFGLIPPFSAVDALGEAVAKTVIDARNQAPFLSKEDVIKRTKL 1413

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQL 901
               + + L      G  +     R QL
Sbjct: 1414 NNSHIKTL---TKMGVFNGM-QERNQL 1436



 Score = 76.2 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS  S ++G  ++   +  +A+    AIA+TD  N+ S  E    +  AGI+ I 
Sbjct: 316 VELHTHSKMSAMDGIGTIEQYIKTVASWGHKAIAVTDHGNVQSFPEAQSASLQAGIKMIY 375

Query: 72  GCQLDI 77
           G + ++
Sbjct: 376 GVEFNM 381


>gi|307298437|ref|ZP_07578240.1| DNA polymerase III, alpha subunit [Thermotogales bacterium
            mesG1.Ag.4.2]
 gi|306915602|gb|EFN45986.1| DNA polymerase III, alpha subunit [Thermotogales bacterium
            mesG1.Ag.4.2]
          Length = 1412

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 171/942 (18%), Positives = 322/942 (34%), Gaps = 199/942 (21%)

Query: 57   EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            +F Q+A   G++ +   +         K+             I +L    +G + L +LV
Sbjct: 559  KFLQQAKKRGVEKVNELE---------KLRKNQNLDSLKPVHISILSKNRKGLENLYKLV 609

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            +  +         RI  S L +   EGL++ +   SG + +A+   +S    + +  F  
Sbjct: 610  TASHTK-YFYMKPRIPKSLLTDF-REGLLIGSACISGELSKAYIGGASVDELEEIAKFYD 667

Query: 177  LFGDRLYVNLQRHRGYDRYRESQVVQL-------AYTHELPLVATNNSLFLSEEDYEAHD 229
                    N+    G     +  ++++            +P+V T +  F++  D     
Sbjct: 668  YIEVMPLDNIDTSEGETSMSKETLIKMYREFYKVGKKLNIPVVMTGDVHFVNPHDDIYRA 727

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM----VSIFSDLPEALENTVEIARRCSFIL 285
             + A          D  +  P  YL    EM    + IF D   A E  V+ +R  +  +
Sbjct: 728  AINAAQ------DYDNFQNQPSLYLHTTEEMIGKALEIFEDEGIAKEIVVDNSRLIASQI 781

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            +   PI  +        + +  + E+R  A+   E    +             +RL+ EL
Sbjct: 782  ENVVPIEGKLHPP----VIEGADEEVRKMAIENAERLYGK------PLPDIVEKRLNREL 831

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL-- 403
              I    ++  +LI    ++ + ++   VG  RGS   S+ A  + IT+++PL    L  
Sbjct: 832  EAIIGHGYAVLYLIAQKMVKKSNEDGYVVG-SRGSVGSSLVANVIGITEVNPLPPHYLCP 890

Query: 404  --------------------------------------FERFLNPDRMSMPDFDIDFCQD 425
                                                  FE FL  +   +PD D++F  +
Sbjct: 891  ECGKSVFPETDLESGYDLPAMKCPGCGNEMLKNGQSIPFETFLGFEGDKVPDIDLNFSGE 950

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +++   +++  +G + V +  T  ++  + A   V    +                   
Sbjct: 951  YQEKAHSFIEELFGRDHVFRAGTISTVAERTAFGFVRAYSEKS----------------- 993

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLV 543
              +L+    +                  I++ + G+ R    H  G++I  + +      
Sbjct: 994  GKTLRRAEQE-----------------RIARGIVGVKRTTGQHPGGLMIVPKDMDVHNFT 1036

Query: 544  PMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+     D +S +  T F  + I    L+K D LG    T ++   D        VD   
Sbjct: 1037 PVQHPANDTKSSILTTHFAYEVIHD-DLVKIDALGHDDPTFIKMLKDITG-----VDPEK 1090

Query: 601  IPFDDHET--------------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            IP DD ET              + L T  GTLGI +  ++ +R  L   +P    +++ +
Sbjct: 1091 IPMDDEETLGIFSSLKPLGLRFHELGTDVGTLGIPEFGTTFVRSMLSDTRPSTFGELVRI 1150

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
              L         V  NN K+    I S H  +  ++         ++ +M    +  G  
Sbjct: 1151 SGLSHGTD----VWLNNAKDI---ITSGHASLSQVIA-------CRDDIMNY-LIGKGME 1195

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
              EA  +   + K      + + E    G          A   F    K   Y F ++HA
Sbjct: 1196 PKEAFKIMEKVRKGKGLSKEDEIEVRSCG----------APEWFMNSCKKIKYLFPRAHA 1245

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIKKF-------- 805
            AAY  + Y+ A+ K H+P+ F +   +++    +             +I +         
Sbjct: 1246 AAYVSMGYRVAYFKVHFPLAFYSTYFSIKGGEFDIDICTSDINSIKKEIVRLRSDQDRNV 1305

Query: 806  -----------CQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
                         + +      +   +  +    F +  N +   L  ++ +G   AR +
Sbjct: 1306 KDRAKETLLEVVMEMKLRGFSFLNVDLMESHPTRFLIEGNSLRIPLNRLQNMGDKAARSV 1365

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                  +PF S+ED   R     LN+  +E L   GAL    
Sbjct: 1366 EVEREKRPFSSVEDLIRRT---ALNKTSVEMLRKYGALKNLA 1404



 Score = 86.2 bits (212), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           +   +EK    V L +H+  S L+  + +N++++ +      A A+TD   + S  EF  
Sbjct: 306 MDNAMEKR---VELHLHTKMSSLDSVVDVNDLVNTLKDWGHDAAAVTDHGVVQSIPEFYF 362

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFP 94
            A   GI+PI G +  +         N  K   P
Sbjct: 363 AAKKKGIKPIFGMEGYMIKDSEQISMNLEKEDSP 396


>gi|315611914|ref|ZP_07886833.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296]
 gi|315316092|gb|EFU64125.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296]
          Length = 1463

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 313/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVDAAVEVAEYYDFIEVMPPAIYAPLIAKEQVKDLEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++       ++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKHVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPNKDCPKCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNEIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLDAIKRRMEEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSDATEFIIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVAIAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|288904428|ref|YP_003429649.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus UCN34]
 gi|306830461|ref|ZP_07463631.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
            gallolyticus TX20005]
 gi|325977425|ref|YP_004287141.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
            gallolyticus ATCC BAA-2069]
 gi|288731153|emb|CBI12701.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus UCN34]
 gi|304427486|gb|EFM30588.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
            gallolyticus TX20005]
 gi|325177353|emb|CBZ47397.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
            gallolyticus ATCC BAA-2069]
          Length = 1464

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 161/916 (17%), Positives = 312/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+  +       V    + V    G + + +LVS   +    +   RI  + L +   
Sbjct: 602  NTKLVAEDSYKKARVKHATIYVQNQTGLKNIFKLVSLSNVK-YFEGVARIPRTVL-DAHR 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYD-----R 194
            EGL++ T  S G +  A   +    A K    +   ++    LY  L            R
Sbjct: 660  EGLLLGTACSEGEVFDAVLSSGVDAAVKVAKYYDFIEVMPPALYAPLLAQGTIKDEEGIR 719

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-------VAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  ED    ++++        +       +  +P 
Sbjct: 720  QVIRDLLEVGRRLNKPVLATGNVHYIEPEDEIYREIIVRSLGQGAPINRPIGRGENAQPA 779

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALE------NTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E +       NT + A R   +  V   +   F+EK  +
Sbjct: 780  PLPKAHFRTTNEMLDEFAFLGEDVAYEIVVKNTNDFADRFEEVEVVKKDLYTPFLEKSEE 839

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             +          KA            I           R++ EL  I    F+  +L   
Sbjct: 840  RV----AEMTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 885

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------- 399
              +  +      VG  RGS   S  A  + IT+++P+                       
Sbjct: 886  MLVIRSNDRGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSVGSG 944

Query: 400  -------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  D +      V++ +G 
Sbjct: 945  YDLPDKDCPECGTRYKKDGHDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGE 1004

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            +   +  T G++  + A   V +  +  Y       K  P                    
Sbjct: 1005 QYAFRAGTVGTVADRTAYGFV-KGYERDYG------KFYP-------------------- 1037

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                +  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1038 ----EAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDLSAEWQT 1090

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D   IP DD +   L +  
Sbjct: 1091 THFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG-----IDPKDIPADDPDVMALFSGT 1144

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1145 EVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVEETHPTTFAELLQLSGLSHGTDVWLGNA 1203

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   +   + VI  ++ +M     A L    + +  + +R+ M  KI +E   ++  
Sbjct: 1204 QDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGMWLKISDE---ERNG 1260

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I    +N +      +  ++      Y F K+HAAAY +++ + A+ K HYP+ +  A 
Sbjct: 1261 YIEAMRENNVPDWYIESCGKI-----KYMFPKAHAAAYVLMALRVAYFKVHYPIYYYCAY 1315

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1316 FSIRAKAFDIKTMSAGLDAVKERMADISNKRKNNEASNVEIDLYTTLEIVNEMLERGYKF 1375

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ I++A  +  F S  +   R    
Sbjct: 1376 GQLDLYRSDATEFIIDGDTLIPPFVAMDGLGENVAKQIVKAREEGEFLSKMELRKR---G 1432

Query: 876  KLNRRVLESLVFAGAL 891
             ++  ++E +   G L
Sbjct: 1433 GVSATLVEKMDEMGIL 1448



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 87/274 (31%), Gaps = 19/274 (6%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++  ++D  A     A+AITD  N+ S      +A  
Sbjct: 333 MPEGQKRVEFHAHTNMSTMDALPTVEELIDTAAKWGHKAVAITDHGNVQSFPHGYHRARK 392

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            GI+ I G + +I         N           +V  V T      L  + + +  +  
Sbjct: 393 NGIKAIFGLEANIVEDKVPIAYNPQDIELNEATYVVFDVETT----GLSAVNNELIQIAA 448

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      +    E    G  L   T   +G  D           E+ L  F+    D +
Sbjct: 449 SKMYKGNIVEQFDEFINPGHHLSAFTTELTGITDNHVRNAKP--IEEVLQMFQDFCQDTV 506

Query: 183 YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
              L  H     +    +      H +P++ T   +   E     +       H      
Sbjct: 507 ---LVAHNAT--FDVGFMNANYERHGMPII-TQPVIDTLEFARNLYP--EYKRHGLGPLT 558

Query: 243 KDRPRVTPDHYLKNRSEMVS---IFSDLPEALEN 273
           K        H++ N     +   +F  L EA EN
Sbjct: 559 KRFQVSLEHHHMANYDAEATGRLLFIFLKEAREN 592


>gi|197261382|ref|YP_002154198.1| putative DNA polymerase III, alpha subunit [Pseudomonas phage LBL3]
 gi|197244472|emb|CAR31207.1| putative DNA polymerase III, alpha subunit [Pseudomonas phage LBL3]
          Length = 1035

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 206/863 (23%), Positives = 358/863 (41%), Gaps = 98/863 (11%)

Query: 10  SFVHLQVHSSYSLLEGAL--SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SF  L+V S YS   GA       I+++    + P +AI D    +  + + Q A  A +
Sbjct: 2   SFPQLRVRSGYS--YGAAYGRFPEIIERAKEIESPFVAIVDDGT-WGHVRWEQAATKAEL 58

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
               G ++ I   D+ +   + K          +L       ++   L S+         
Sbjct: 59  PRGFGMEIPIKCADDGEKELKLKA--------WVLAKDT---KKFYRLTSKSVQNQG--- 104

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              +     QE   +G+I   G +   +D A                           + 
Sbjct: 105 ---LTPQEFQEA--DGVIKFAGEAYAHLDLAGI---------------DYIDINPASMVA 144

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVAT--NNSLFLSEED-YEAHDVLMAVAHSTVVSQKD 244
            H   +          A     P+V T  N+   +   D   A  V  +V    + ++++
Sbjct: 145 AHGAMET---------ARAFGKPVVITSYNDMPSIDHADFASAWKVRESVGLRHIATEEE 195

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               +   ++  R E          A+ NT  +  + + +    AP++            
Sbjct: 196 LW--SRLRHIMTREE-------FDSAIANTRAVVEQLADVKLAKAPMIH----------- 235

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              + ++   A  G   RL++G I      Q+Y  R   E+  I    F  YFL+VAD +
Sbjct: 236 --LDGDIVALAREGQAYRLSRGHIK--EWTQEYEDRFQEEIKQIQLKDFDSYFLVVADLV 291

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +AKK+ + VGP RGS AGS+  Y L IT++DPL   LLF+RF++  R  +PD DIDF  
Sbjct: 292 AFAKKH-MLVGPARGSSAGSLVCYLLGITEVDPLPHRLLFQRFIDISRSDLPDIDIDFAD 350

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DP 483
             R  V  Y+Q KYG   V ++    +L+A + +  VG+   +P+   D +   I     
Sbjct: 351 THRYLVFEYLQQKYGTWNVVKLGNINTLKAASVIAHVGKRFGIPFHDTDNIKNSIIEYTS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG----LYRHASTHAAGIVIGDRPL 539
           A     + + D     E            EI+    G       H+  HAAGI++ +  +
Sbjct: 411 ADERYGKGLEDT---FEKTQPGRDFREKYEIASACMGDLEIHPSHSGVHAAGILVCNDEV 467

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
                +  +      V Q +    E   L+K D LGL+TL ++Q +           +L 
Sbjct: 468 IDFCTVTSEG-----VAQLDKPDSEYLNLLKIDALGLRTLGVIQDA-----NCVTAQELY 517

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            +P +D     +L      GIFQ E   +R     +     E+I  + +L RPGP+ + +
Sbjct: 518 DLPLNDKAVLDILNEDKMSGIFQFEGQAVRSVANAINITAFENIDHITALARPGPLSSGM 577

Query: 660 --VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
              Y  R  G+E +    P ++  L  T GV +YQEQ+M I + +  +   +   +R+AM
Sbjct: 578 ATKYIERVAGREPVTYTIPQVEQYLSGTYGVFLYQEQIMSIVKDIGQFDWEQTSAIRKAM 637

Query: 718 GKKIKEE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             +  EE  +K++E FI GA   G++   A  +++ +  F  +GFN+SH+ +YAV++Y T
Sbjct: 638 SARKGEEFFNKRRELFIEGAKTIGVAPDDANRVWQEMVTFGAWGFNRSHSVSYAVVTYWT 697

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            +MK ++ +E+ AA +    D+ + +    + A++  ++          +++ V D R+ 
Sbjct: 698 CYMKRYHRLEYAAACLRAAKDDQQTVSILRELAKE-GVEYTALDPEHSELNWVVADGRLI 756

Query: 837 YSLAAIKGVGTTTARHIMEASAD 859
             +   KG G   A   +    +
Sbjct: 757 GGIMNAKGFGPAKAERFLRLREE 779


>gi|307692373|ref|ZP_07634610.1| DNA polymerase III PolC [Ruminococcaceae bacterium D16]
          Length = 1396

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 163/937 (17%), Positives = 314/937 (33%), Gaps = 175/937 (18%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
               F +K  A G+  +      +          +G         +++L     G + L +
Sbjct: 526  LPPFFEKLEAMGVHRLEDINAAM------PKLRKGGKARRQPKHLIVLAKNQTGLRNLYK 579

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L+S  +L +  K+   +  S + E   EGLI+ +   +G + +A   +      KR+ ++
Sbjct: 580  LISLAHL-EHFKRYPIMPKSVINE-NREGLIIGSACEAGELFQAVTADKDWEELKRIASW 637

Query: 175  ------KKLFGDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
                  + +  +   +     R  +  R     VV+L      P+ AT +  FL  ED  
Sbjct: 638  YDFLEIQPICNNMFMLRKGMVRSEEELRDFNRTVVRLGEELGKPVCATGDVHFLDPEDEI 697

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFI 284
               +L+A        +          Y K   EM+  F+ L +  A E  V+     +  
Sbjct: 698  YRHILLASKGFEDADEAL------PIYFKTTDEMLQEFAYLGKEKAYEVVVKNTNLIADW 751

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                 P+       + +D     + EL+                      Q    R++ E
Sbjct: 752  CDPIKPLPQGLFAPKLED----SDGELKRLVWGKAHELYGD------EPPQIVVDRINVE 801

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----- 399
            L  I R K+   ++     +Q + ++   VG  RGS   S+ A+   IT+++ L      
Sbjct: 802  LGDIIRCKYDVIYMSAQKLVQNSLEHGYLVG-SRGSVGSSLVAFMSGITEVNSLPAHYRC 860

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                    F++ FE FL      +PD D
Sbjct: 861  PKCKHSDFDYAQDPAHPYGCGADMPDAVCPICGTPYMKDGFNIPFETFLGFGGDKVPDID 920

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  + +    RY    +G   V +  T G++  K A   V + L        +     
Sbjct: 921  LNFSGEYQSSAHRYTFELFGQTHVFRAGTIGTVAEKTAFGYVKKYLDERGKMASK----- 975

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG--DR 537
                         A+++R                 +    G+ R    H  G+V+   D+
Sbjct: 976  -------------AEENRL----------------AIGCTGVKRTTGQHPGGMVVIPQDK 1006

Query: 538  PLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+     D  SD+  T F    +E   L+K D LG    T+++   D       
Sbjct: 1007 EIYDFCPVQHPADDPNSDIVTTHFEYHSMES-NLLKLDMLGHDDPTMIRMLEDLTGVNAR 1065

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                + IP DD +T  +  +   LG    +  G       +       +  ++   +P  
Sbjct: 1066 ----TDIPLDDKDTMSIFQSSKALGYENDKILG-PTGGTAIPEFGTSFVRGMLEDTQPDQ 1120

Query: 655  IDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             D +V  +   +G +  + +   LI     +    I  ++ +M +  +  G     +  +
Sbjct: 1121 FDILVRLSGFSHGTDVWLGNAKDLITSGTAKVSEAIGCRDDIM-LFLISKGMDPKRSFKI 1179

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
              A+ K           R +   +++ + +      +    K   Y F K+HA AY +++
Sbjct: 1180 MEAVRK----------GRGLPEGAEDEMREHGVPEWYIGSCKKIAYLFPKAHAVAYVMMA 1229

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIKKFCQ------------- 807
            ++ AW K H P+ F AA  ++     +             K+++                
Sbjct: 1230 FRIAWFKVHRPLAFYAAYFSIRAKAFDEAYMCRGMDVCQKKMREIIAKDKDASAVEQDML 1289

Query: 808  -------DARQFNIQIMPPSVNTP-CVDFKV--GDNRIYYSLAAIKGVGTTTARHIMEAS 857
                   +            +     + FK+   +N +     ++ G+G T A  + E  
Sbjct: 1290 TTLEVCYEFYLRGFTFRRMDIYQSDAIHFKMDLENNALIPPFVSVAGLGETAAISLAEQR 1349

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              K F S+E+  +     K+++  +E L  AGA    
Sbjct: 1350 KGKNFISIEEVAAACP--KVSKTHIELLKEAGAFGDL 1384



 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 4   YLEKSPS-FVHLQVHSSYSLLEG--ALSLN-----NILDKIAADQQPAIAITDTNNLFSA 55
            ++ +P   V L +H++ S ++   A+        N++ +  A    AIAITD     S 
Sbjct: 270 RMDNAPEKRVELHLHTTMSAMDALTAVGPKLGPERNVVKRAEAWGHRAIAITDHGVAQSF 329

Query: 56  LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPF 93
            +    A    +   +      D+ D + +  Q    F
Sbjct: 330 PDAWHSAKNIKLLYGVEAYFINDVDDRVVVHGQPCQDF 367


>gi|307707703|ref|ZP_07644182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis NCTC 12261]
 gi|307616201|gb|EFN95395.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis NCTC 12261]
          Length = 1463

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 314/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLVSPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  + G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACAEGEVFDAVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         V  +    +  +P 
Sbjct: 719  TIIKSLIEVGERLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMVNRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALADIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +  + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVLRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPNKDCPKCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNEIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLDAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +     ++F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSQAIEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|300813717|ref|ZP_07094037.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus
            sp. oral taxon 836 str. F0141]
 gi|300512174|gb|EFK39354.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus
            sp. oral taxon 836 str. F0141]
          Length = 1415

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 178/940 (18%), Positives = 325/940 (34%), Gaps = 189/940 (20%)

Query: 51   NLFSALEFSQKACAAG---IQPIIGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVST 105
            +L  A      A A     I+ I        +  N    + +Q +       S+ +L   
Sbjct: 538  SLVGAHRAVNDAEATAHLFIKLINKIFDPKHIDFNKLNSLKSQIEPEILFESSLSILTKN 597

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS- 164
             EG + L +LVS  ++ +   +  ++  S + +   +GL++ +G  SG I  AFF N   
Sbjct: 598  EEGLKNLYKLVSDSHM-NYFNRVAKVPRSLINKY-RKGLLIGSGDESGEIFNAFFRNLEI 655

Query: 165  QVAEKRLLTFKKL---FGDRLYVNLQRHRGYDR---YRESQVVQLAYTHELPLVATNNSL 218
               EK    +  L     D    +L R++           ++ ++     +P++AT+N  
Sbjct: 656  DEVEKIASFYDYLEIQPIDNFIPSLLRNKLTREDIIEINKKICKVGENLGIPVIATSNCF 715

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVE 276
            +L E+D     +++              ++    Y K+   M+  FS L   +A+E  V 
Sbjct: 716  YLDEKDDLVRRIILNGKVGVPDYNA---KIKQKLYFKSTDLMLEEFSYLGADKAMEVVVT 772

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
                 +  +    PI         +  ++  +N    KA            I      Q 
Sbjct: 773  NTNLINDSIDNVKPIPDGKYPPVIEGSEETLKNITYKKAHE----------IYGDPLPQI 822

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               RL  EL+ I    ++  ++I    ++ +  +   VG  RGS   S  A+   IT+++
Sbjct: 823  VEARLKKELDSIISNGYAVLYIIAQKLVKKSNDDGYLVG-SRGSVGSSFAAHMADITEVN 881

Query: 397  PLR-----------------------------------------FSLLFERFLNPDRMSM 415
            PL                                           ++ FE FL       
Sbjct: 882  PLPAHYICPQCKYSEFMEDPTIGSGVDLADKNCPKCGHKLNKNGHNIPFEVFLGFYGDKE 941

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  + +    +Y +  +G   V +  T G +  K A   V +  +         
Sbjct: 942  PDIDLNFAGEYQPNAHKYTEELFGKGYVFRAGTIGKVAYKTAYGYVKKFFE--------- 992

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                    +  ++   VDRL   +    G+ R +  H  G++I 
Sbjct: 993  -----------------------NQEDISQTEVDRLTIEA---TGVKRTSGQHPGGVMIC 1026

Query: 536  DR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
             +   +    P+     D  S +  T F+  +I    ++K D LG    T+++   DF+ 
Sbjct: 1027 PKSKDIFDFTPIQYPADDKSSGVITTHFDYNFIH-GKILKLDILGHDGPTIIKMLEDFIG 1085

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQ 636
                 +D S IP DD +T  L ++               GTLGI +  +  +RQ L   +
Sbjct: 1086 -----IDTSKIPLDDKDTLSLFSSGEKLNLDKNIFDVSTGTLGIPEFGTGFVRQMLIDTK 1140

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            P    +++ +  L     +                 +   L+         VI  +E +M
Sbjct: 1141 PKNFAELVRISGLSHGTDVWLG--------------NAADLVSSGQASLSEVICTREDIM 1186

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
             +  + +G     A      + K      ++ K           I   + +         
Sbjct: 1187 -LYLIAAGAENKMAFDTMEKVRKGKGLTDEQIKIMNNLKLPPWYIDSCLKIK-------- 1237

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQ 807
              Y F K+HA AY ++S++ A+ K +YP+ F A   T+++ +          E IK    
Sbjct: 1238 --YMFPKAHAVAYVMLSFRIAYCKLNYPLAFYATYFTIKLSDFVGEVIINGPEAIKAQID 1295

Query: 808  -----------------------DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIK 843
                                   +     ++ +P  +      +F + D +I   L A+ 
Sbjct: 1296 FINNKETPSSKEQTQMPIYEVALEMYSRGLEFLPVDIYKSKAQEFTIEDKKIRMPLRALT 1355

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            GVG   A++I+EA  D  F S ED   R    K    + E
Sbjct: 1356 GVGEQAAKNIIEARNDGQFLSKEDLLKRAKVGKSLLNIFE 1395



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L+VH+  S + G  S ++   +  +    AIAITD +++    E    +    I+ I 
Sbjct: 316 VELRVHTKMSQMNGVTSFSDFAKRAKSFGHKAIAITDVSDVQGFPEAMDASKDFDIKVIY 375


>gi|225858122|ref|YP_002739632.1| DNA polymerase III PolC [Streptococcus pneumoniae 70585]
 gi|225720766|gb|ACO16620.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae 70585]
          Length = 1463

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 313/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNKIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIVDLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYCSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 83.5 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEAIYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|50915026|ref|YP_060998.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10394]
 gi|73919253|sp|Q5X9U8|DPO3_STRP6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|50904100|gb|AAT87815.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10394]
          Length = 1465

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 156/939 (16%), Positives = 320/939 (34%), Gaps = 181/939 (19%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+ ++          N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKDAREKHGIKNLLQL--------NTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGIPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDF 695

Query: 176  ------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                   ++   +   L + +         ++++      P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYRE 755

Query: 230  VL-------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVE 276
            ++         +  +    +  +P   P  + +  +EM+  F+ L +       +ENT +
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVENTQD 815

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
             A R   +  V   +   +I+K  + + +        KA            I        
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELT----YQKAFE----------IYGNPLPDI 861

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++
Sbjct: 862  IDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVN 920

Query: 397  PLRF-----------------------------------------SLLFERFLNPDRMSM 415
            P+                                            + FE FL  D   +
Sbjct: 921  PMPPHYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKV 980

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R 
Sbjct: 981  PDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYR- 1038

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                         D  V+RL   +    G+ R    H  GIV+ 
Sbjct: 1039 -----------------------------DAEVERL---AAGAAGVKRTTGQHPGGIVVI 1066

Query: 536  DR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+             T FN   I++  ++K D LG    T+++K  D   
Sbjct: 1067 PNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG 1125

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD     L +    LG+   E  G    + G+       +  +V+  
Sbjct: 1126 -----IDPITIPADDPGVMALFSGTEVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVNET 1179

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYS 706
             P     ++  +   +G +  + +   LI   +   + VI  ++ +M     A L    +
Sbjct: 1180 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMA 1239

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             +  + +R+ +  KI EE   ++  +I    +N +      +  ++      Y F K+HA
Sbjct: 1240 FTIMERVRKGLWLKISEE---ERNGYIDAMRENNVPDWYIESCGKI-----KYMFPKAHA 1291

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIK-------------- 803
            AAY +++ + A+ K H+P+ +  A  ++             ++ +K              
Sbjct: 1292 AAYVLMALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNE 1351

Query: 804  ------------KFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +  +   +        +  ++F++  + +     A++G+G   A
Sbjct: 1352 ATNVENDLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVA 1411

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            + I++A  +  F S  +   R  +       ++ +   G
Sbjct: 1412 KQIVKARQEGEFLSKMELRKRGGASSTLVEKMDEMSILG 1450



 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  
Sbjct: 334 MPEGQKRVEFHAHTNMSTMDALPTVESLIDMAAKWGHKAVAITDHANVQSFPHGYHRARK 393

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 394 AGIKAIF 400


>gi|306830212|ref|ZP_07463396.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249]
 gi|304427738|gb|EFM30834.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249]
          Length = 1463

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 156/912 (17%), Positives = 310/912 (33%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A      + A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVEAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEI--ARRCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L E L + + I      + I +    +         D  ++
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELAHKLVIDNPNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     +Q
Sbjct: 839  TVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQ 888

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 889  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMP 947

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 948  NKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGSEYAF 1007

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1008 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1036

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1037 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1093

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG
Sbjct: 1094 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNEIPMDDEGVMALFSGTDVLG 1147

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            +   E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1148 VTP-EQIGTATGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1206

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  +I  
Sbjct: 1207 KQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEA 1263

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
               N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1264 MKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1318

Query: 796  MDNVE-KIK----------------------------------KFCQDARQFNIQIMPPS 820
                + K                                    +   +  +   +     
Sbjct: 1319 AKAFDIKTMGAGLDAIKRRMEEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFKFGKLD 1378

Query: 821  VNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R     L+ 
Sbjct: 1379 LYRSDATEFIIDGDTLIPPFVAMDGLGENVAKQLVRARQEGEFLSKTELRKR---GGLSS 1435

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1436 TLVEKMDEMGIL 1447



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|253573562|ref|ZP_04850905.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
            str. D14]
 gi|251847090|gb|EES75095.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
            str. D14]
          Length = 1438

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 168/923 (18%), Positives = 312/923 (33%), Gaps = 196/923 (21%)

Query: 81   DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG 140
            D L                 +      G + L +L+S  +  +  K+   I  S L E+ 
Sbjct: 594  DRLNDKVGKDLSNARPFHCGIYALNPVGKKNLFKLISLSHT-EYFKRVPCIPKSKLVEL- 651

Query: 141  TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHR-----GYD 193
             EGL++L+G   G         S + AE     +   ++    +Y++L            
Sbjct: 652  REGLLILSGCEKGEFFETVLNKSVEEAEAVAEFYDVLEIQPLTMYMHLVEKGLVGSTEEL 711

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +    ++V++    + P+VAT N  +L  +D    D+ +   H        +    PD +
Sbjct: 712  QTAIRKIVEIGMKLDKPVVATGNVHYLDPKDKLFRDITI---HGITGFSPLKEVRKPDAH 768

Query: 254  LKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   EM+  F+ L +       + NT  +A R   I          F +K    I +  
Sbjct: 769  FRTTEEMLEEFAFLGQEKAWEVVVTNTSALADRFEEIEL--------FPDKLFTPIIEGA 820

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + E+R K     +    +         +   +RL+ EL  I +  FS  +LI    ++ +
Sbjct: 821  DEEIRQKCYDTAKSIYGEEL------PEVIVKRLEKELEPIIKYGFSANYLISERLVKKS 874

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
             ++   VG  RGS   SV A  L I++++PL                             
Sbjct: 875  NQDGYLVG-SRGSVGSSVVALFLGISEVNPLPAHYICQNPECKYSEWFLDGSVPSGFDLP 933

Query: 400  ---------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL      +PD D++F  + +     Y +  +G + V 
Sbjct: 934  DKSCPKCGGKLKGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPVAHNYTKVLFGEKNVF 993

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++  K A     +  +                            +  +R A   
Sbjct: 994  RAGTIGTVAEKTAFGFAKKYEE--------------------------EHNKHWRGA--- 1024

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMY---RDVRSDLPVTQFN 559
                  L  ++    G+ R    H  GIV+    +    + P+     D  S+   T F+
Sbjct: 1025 -----ELNRLAAGCTGVKRSTGQHPGGIVVVPDYIDVEDITPVQYPADDTESEWKTTHFD 1079

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--- 616
                +   L+K D LG    T+++   D        VD + IP +D +   +  +     
Sbjct: 1080 YHAFDA-NLLKLDILGHDDPTMMRMLQDLTG-----VDPTTIPMNDPKVMSMFNSTDALG 1133

Query: 617  -----------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                       T GI ++ +  +RQ L   QP    D++ +  L     +          
Sbjct: 1134 VTPEQIRTPVATYGIPEMGTKFVRQMLVESQPSSFADLLQISGLSHGTGVWLG------- 1186

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
                   +   LI       + VI  ++ +M      +G     A  +  ++ K      
Sbjct: 1187 -------NAQELIKNGTCNIKTVIGCRDDIMLYLIYKAGMDAGLAFKITESVRKGKGLTP 1239

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +  +E          + K      +        Y F K+HAAAY + + +TA+ K +YP+
Sbjct: 1240 EWIEE----------MKKCKVPQWYIDSCLKIQYMFPKAHAAAYVISAVRTAYFKLYYPI 1289

Query: 786  EFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVN-------------- 822
            E+ A   ++  ++ +          I +  ++  Q   Q +P   N              
Sbjct: 1290 EYYATYFSVRGEDFDIELYCQGYEAIYRKIEEIEQKGFQALPKEKNMLPILEMALEMTAR 1349

Query: 823  -----------TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                       +    F V  + +    +A+ G+G   A++I  A     F S+EDF  +
Sbjct: 1350 GFHFKPIDLYRSDATKFIVDGDSLIPPFSALAGIGENAAKNIAAAKEQGEFLSIEDFQQK 1409

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K ++ ++E L   G     
Sbjct: 1410 ---SKASKTIMELLGSMGCFRGL 1429



 Score = 77.7 bits (190), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 40/94 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++    + + +   A     AIA+TD   + S  + ++ A   GI+ I 
Sbjct: 335 VEFHLHTTMSTMDAVTPIGDYVKMAAKWGHKAIAVTDHGGVQSFPDAAKAAKKHGIKMIY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++   D   + N       T   +V  + T
Sbjct: 395 GVEANVVNDDVAVVLNPRGDELKTATYVVFDIET 428


>gi|94995162|ref|YP_603260.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10750]
 gi|123382133|sp|Q1J4M0|DPO3_STRPF RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94548670|gb|ABF38716.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10750]
          Length = 1465

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 158/941 (16%), Positives = 321/941 (34%), Gaps = 184/941 (19%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+ ++          N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKDAREKHGIKNLLQL--------NTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDF 695

Query: 176  ------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                   ++   +   L + +         ++++       ++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKLVLATGNVHYLEPEEEIYRE 755

Query: 230  VL-------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVE 276
            ++         +  +    +  +P   P  + +  +EM+  F+ L +       +ENT +
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVENTQD 815

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
             A R   +  V   +   +I+K  + + +        KA            I        
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELT----YQKAFE----------IYGNPLPDI 861

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++
Sbjct: 862  IDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVN 920

Query: 397  PLRF-----------------------------------------SLLFERFLNPDRMSM 415
            P+                                            + FE FL  D   +
Sbjct: 921  PMPPHYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKV 980

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R 
Sbjct: 981  PDIDLNFSGDDQPSAHLDVRDIFGAEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYR- 1038

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                         D  VDRL   +    G+ R    H  GIV+ 
Sbjct: 1039 -----------------------------DAEVDRL---AAGAAGVKRTTGQHPGGIVVI 1066

Query: 536  DR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+             T FN   I++  ++K D LG    T+++K  D   
Sbjct: 1067 PNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG 1125

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD     L +    LG+   E  G    + G+       +  +V+  
Sbjct: 1126 -----IDPITIPADDPGVMALFSGTEVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVNET 1179

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYS 706
             P     ++  +   +G +  + +   LI   +   + VI  ++ +M     A L    +
Sbjct: 1180 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMA 1239

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             +  + +R+ +  KI EE   ++  +I    +N +      +  ++      Y F K+HA
Sbjct: 1240 FTIMERVRKGLWLKISEE---ERNGYIDAMRENNVPDWYIESCGKI-----KYMFPKAHA 1291

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIK-------------- 803
            AAY +++ + A+ K H+P+ +  A  ++             ++ +K              
Sbjct: 1292 AAYVLMALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNE 1351

Query: 804  ------------KFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +  +   +        +  ++F++  + +     A++G+G   A
Sbjct: 1352 ATNVENDLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVA 1411

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + I++A  +  F S  +   R      +  ++E +   G L
Sbjct: 1412 KQIVKARQEGEFLSKMELRKR---GGASSTLVEKMDEMGIL 1449



 Score = 77.7 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V L  H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  
Sbjct: 334 MPEGQKRVELHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARK 393

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 394 AGIKAIF 400


>gi|325688979|gb|EGD30987.1| DNA polymerase III PolC [Streptococcus sanguinis SK115]
          Length = 1462

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 155/912 (16%), Positives = 312/912 (34%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +  A        A +    +   ++    +Y  L          E Q
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEVMPPAIYEPLIAKEQIKDQEELQ 717

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++       ++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 718  TIIRNLIEVGERLGKLVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGENAQPA 777

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQK 305
              P  + +  +EM+  F+ L + L   + I    + +   +    +         D  ++
Sbjct: 778  PLPKAHFRTTNEMLDEFAFLGKDLAKKLVITNPNQLAETFEPVEVVKGDLYTPFIDKAEE 837

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     +Q
Sbjct: 838  TVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQ 887

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++PL                           
Sbjct: 888  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMP 946

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  + +      V++ +G E   
Sbjct: 947  DKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGAEYAF 1006

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V +  +  Y +  R                              
Sbjct: 1007 RAGTVGTVAAKTAYGFV-KGYERDYGKFYR------------------------------ 1035

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   T FN
Sbjct: 1036 DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFN 1092

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D + IP DD     L +    LG
Sbjct: 1093 FHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNDIPMDDAGVMALFSGTDILG 1146

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            + Q E  G    + G+       +  +V    P     ++  +   +G +  + +   LI
Sbjct: 1147 VTQ-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLI 1205

Query: 679  DPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M       L    + +  + +R+ +  KI EE   ++  +I+ 
Sbjct: 1206 KQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEE---ERNGYIAA 1262

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              +N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1263 MKENNVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIR 1317

Query: 796  ---------MDNVEKIK--------------------------KFCQDARQFNIQIMPPS 820
                        ++ +K                          +   +  +   +     
Sbjct: 1318 AKAFDIKTMSGGLDAVKRRMNEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFKFGKLD 1377

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   +F +  + +    +A+ G+G   AR ++ A  +  F S  +   R     L+ 
Sbjct: 1378 LYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR---GGLSS 1434

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1435 TLVEKMDDMGIL 1446



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 331 MPEGQKRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 390

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+          +V  V T      L  + + +  +  
Sbjct: 391 AGIQLIYGMEANIVEDRVPIVYNEVDMELSDATYVVFDVETT----GLSAVYNDLIQVAA 446

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D           E+ L  F++   D +
Sbjct: 447 SKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKP--LEQVLKEFQEFCQDSV 504

Query: 183 YVN 185
            V 
Sbjct: 505 LVA 507


>gi|94989303|ref|YP_597404.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS9429]
 gi|94993192|ref|YP_601291.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS2096]
 gi|123257711|sp|Q1J9R4|DPO3_STRPB RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|123382486|sp|Q1JJW3|DPO3_STRPC RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94542811|gb|ABF32860.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS9429]
 gi|94546700|gb|ABF36747.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS2096]
          Length = 1465

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 157/939 (16%), Positives = 320/939 (34%), Gaps = 181/939 (19%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+ ++          N  +  +       +    + V    G + + +LV
Sbjct: 586  FLRDAREKHGIKNLLQL--------NTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK- 175
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDF 695

Query: 176  ------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                   ++   +   L + +         ++++    + P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYRE 755

Query: 230  VL-------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE------NTVE 276
            ++         +  +    +  +P   P  + +  +EM+  F+ L + L       NT +
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVQNTQD 815

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
             A R   +  V   +   +I+K  + + +        KA            I        
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELT----YQKAFE----------IYGNPLPDI 861

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++
Sbjct: 862  IDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVN 920

Query: 397  PLRF-----------------------------------------SLLFERFLNPDRMSM 415
            P+                                            + FE FL  D   +
Sbjct: 921  PMPPHYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKV 980

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R 
Sbjct: 981  PDIDLNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYR- 1038

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                         D  VDRL   +    G+ R    H  GIV+ 
Sbjct: 1039 -----------------------------DAEVDRL---AAGAAGVKRTTGQHPGGIVVI 1066

Query: 536  DR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+             T FN   I++  ++K D LG    T+++K  D   
Sbjct: 1067 PNYMDVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG 1125

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D   IP DD     L +    LG+   E  G    + G+       +  +V+  
Sbjct: 1126 -----IDPITIPADDPGVMALFSGTEILGVTP-EQIGTPTGMLGIPEFGTNFVRGMVNET 1179

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYS 706
             P     ++  +   +G +  + +   LI   +   + VI  ++ +M     A L    +
Sbjct: 1180 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMA 1239

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             +  + +R+ +  KI EE   ++  +I    +N +      +  ++      Y F K+HA
Sbjct: 1240 FTIMERVRKGLWLKISEE---ERNGYIDAMRENNVPDWYIESCGKI-----KYMFPKAHA 1291

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIK-------------- 803
            AAY +++ + A+ K H+P+ +  A  ++             ++ +K              
Sbjct: 1292 AAYVLMALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNE 1351

Query: 804  ------------KFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +  +   +        +  ++F++  + +     A++G+G   A
Sbjct: 1352 ATNVENDLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVA 1411

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            + I++A  +  F S  +   R  +       ++ +   G
Sbjct: 1412 KQIVKARQEGEFLSKMELRKRGGASSTLVEKMDEMSILG 1450



 Score = 77.7 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V L  H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  
Sbjct: 334 MPEGQKRVELHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARK 393

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 394 AGIKAIF 400


>gi|310641590|ref|YP_003946348.1| DNA polymerase iii, alpha subunit [Paenibacillus polymyxa SC2]
 gi|309246540|gb|ADO56107.1| DNA polymerase III, alpha subunit [Paenibacillus polymyxa SC2]
          Length = 1438

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 169/917 (18%), Positives = 301/917 (32%), Gaps = 184/917 (20%)

Query: 81   DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG 140
            D L                 +      G + L +LVS  +  +  K+   I  S L E+ 
Sbjct: 594  DRLNDYVGKDLSTVRPFHCCIYALNPVGKKNLYKLVSMSHT-EYFKRVPCIPKSKLSEM- 651

Query: 141  TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-----KKLFGDRLYVNLQRHRGYDRY 195
             +GL++++G   G    A    S + AE+    +     + L      V  Q   G D  
Sbjct: 652  RDGLLIISGCEKGEFFEAVLNKSEEEAEEIAQFYDVLEIQPLTMYMHLVEKQLVSGPDAL 711

Query: 196  R--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +    +V  +    + P++AT N  +L   D    D+ +   H        +    PD +
Sbjct: 712  KTAIRKVCDIGKRLDKPVIATGNVHYLETRDKLYRDITI---HGITGFSPLKDIRKPDAH 768

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            L+   EM++ F  L E  E   E+  + +  L      L  F +K    +    + E+RN
Sbjct: 769  LRTTDEMLAEFEFLGE--EKAYEVVVKNTSELAERFEELELFPDKLFTPLLDGADEEIRN 826

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
                       +         +    RL+ EL  I +  FS  +LI    ++ + ++   
Sbjct: 827  TCYETARSIYGESL------PEVVVARLEKELEPIIKYGFSANYLISERLVKKSNQDGYL 880

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLR---------------------------------- 399
            VG  RGS   SV A  L I++++PL                                   
Sbjct: 881  VG-SRGSVGSSVVATFLGISEVNPLPAHYICGNSECRHSEWFLDGSVPSGFDLPDKNCPN 939

Query: 400  ---------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
                       + FE FL      +PD D++F  + +     Y +  +G + V +  T G
Sbjct: 940  CGGKLKGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPVAHNYTKVLFGEKSVFRAGTIG 999

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            ++  K A     +                                    EA         
Sbjct: 1000 TVAEKTAFGFAKKY----------------------------------EEAHHKKWRGAE 1025

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEK 565
            L  ++    G+ R    H  GIV+      +  + P+     D  S+   T F+    + 
Sbjct: 1026 LNRLASGCTGVKRSTGQHPGGIVVVPDYIEVEDITPVQYPADDTSSEWKTTHFDYHAFDA 1085

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------- 616
              L+K D LG    T+++   D        VD + IP +D +   +  +           
Sbjct: 1086 -NLLKLDILGHDDPTMMRMLQDLTG-----VDPTTIPMNDPKVMSMFNSTEALGVTPQQI 1139

Query: 617  -----TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                 T G+ ++ +  +RQ L   QP    D++ +  L     +                
Sbjct: 1140 RTPVATYGVPEMGTKFVRQMLVESQPSSFADLLQISGLSHGTGVWLG------------- 1186

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
             +   LI       + VI  ++ +M      +G     A  +  ++ K      +  +E 
Sbjct: 1187 -NAQELIKNNTCNIKTVIGCRDDIMLFLIYKAGMDAGLAFKITESVRKGKGLSAEWIEE- 1244

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
                     + K      +        Y F K+HAAAY + + +TA+ K ++P+E+ A  
Sbjct: 1245 ---------MKKCKVPQWYIDSCLKIQYMFPKAHAAAYVISAVRTAYFKLYHPIEYYATY 1295

Query: 792  MTLE---------MDNVEKIKKFCQDARQFNIQIMPPS---------------------- 820
             ++              + I +   +  Q   Q  P                        
Sbjct: 1296 FSVRAADFDIDLCCQGYDAIARKIVEIEQLGFQAPPKEKGMLPILEMALEMTARGFSFKS 1355

Query: 821  ---VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
                 +    FKV  + +     A++G+G   AR+I  A     F S+EDF  +    K 
Sbjct: 1356 IDLYRSEATRFKVDGDSLIPPFGALQGIGDNAARNIAAAREQGEFLSVEDFQQK---SKA 1412

Query: 878  NRRVLESLVFAGALDCF 894
            ++ ++E L   G     
Sbjct: 1413 SKTIVEMLSQMGCFRGL 1429



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+  S ++   S++  +   A     AIA+TD   +    + ++ A   GI+ I 
Sbjct: 335 VEFHLHTKMSAMDAVASIDQYVKTAAKWGHKAIAVTDHGGVQCYPDAAKAAKKNGIKMIY 394

Query: 72  GC 73
           G 
Sbjct: 395 GV 396


>gi|77409408|ref|ZP_00786106.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae COH1]
 gi|77171990|gb|EAO75161.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae COH1]
          Length = 1468

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 158/922 (17%), Positives = 315/922 (34%), Gaps = 175/922 (18%)

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
            M+ N K+  +       +    + V    G + + +LVS   +    +   RI  S L +
Sbjct: 603  MELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVSLSNVK-YFEGVARIPRSVL-D 660

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRG 191
               EGL++ T  S G +  A   N    A      +         ++   +  +L +   
Sbjct: 661  AHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYDFIEVMPPAIYRPLVVRDLIKDEA 720

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKD 244
              +     ++++    + P++AT N  ++  ED    +++         +  +    +  
Sbjct: 721  GIQQIIRDLIEVGRRLDKPVLATGNVHYIEPEDEIYREIIVRSLGQGAMINRTIGRGEDA 780

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            +P   P  + +  +EM+  F+ L + L   + +    +F  +                  
Sbjct: 781  QPAPLPKAHFRTTNEMLDEFAFLGKDLAYEIVVTNTNTFADRFED--------------V 826

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFL 358
            +  + +L    V   E R+A+   AK +             R++ EL  I    F+  +L
Sbjct: 827  EVVKGDLYTPFVDRAEERVAELTYAKAFEIYGNPLPDIIDLRIEKELASILGNGFAVIYL 886

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------ 400
                 +Q + +    VG  RGS   S  A  + IT+++P+                    
Sbjct: 887  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSC 945

Query: 401  -----------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  D +      V++ 
Sbjct: 946  GSGYDLPNKNCPKCGTLYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDI 1005

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++  K A   V +  +  Y++                          
Sbjct: 1006 FGEEYAFRAGTVGTVAEKTAFGFV-KGYERDYNK-------------------------- 1038

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---D 552
                   D  V+RL   +    G+ R    H  GIV+      +    P+          
Sbjct: 1039 ----FYNDAEVERL---ATGAAGVKRSTGQHPGGIVVIPNYMDVYDFTPVQYPADDMTAA 1091

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K  D        +D S I  DD +   L 
Sbjct: 1092 WQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDL-----SGIDPSNILPDDPDVMKLF 1145

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +    LG+ + E  G    + G+       +  +V+   P     ++  +   +G +  +
Sbjct: 1146 SGTEVLGVTE-EQIGTPTGMLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHGTDVWL 1204

Query: 673  -SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQ 728
             +   LI   +     VI  ++ +M            + +  + +R+ +  KI E    +
Sbjct: 1205 GNAQDLIKEGIATLSTVIGCRDDIMVYLMHAGLQPKMAFTIMERVRKGLWLKISE---DE 1261

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  +I     N +      +  ++      Y F K+HAAAY +++ + A+ K HYP+ + 
Sbjct: 1262 RNGYIQAMRDNNVPDWYIESCGKI-----KYMFPKAHAAAYVLMALRVAYFKVHYPIFYY 1316

Query: 789  AASMTLE--------------------MDNVEKIK---------------KFCQDARQFN 813
             A  ++                      D  EK +               +   +  +  
Sbjct: 1317 CAYFSIRAKAFELRTMSAGLDAVKARMKDITEKRQRNEATNVENDLFTTLELVNEMLERG 1376

Query: 814  IQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             +        +   DF + ++ +     A++G+G   A+ I+ A  D  F S  +   R 
Sbjct: 1377 FKFGKLDLYRSHATDFIIEEDTLIPPFVAMEGLGENVAKQIVRAREDGEFLSKTELRKR- 1435

Query: 873  DSKKLNRRVLESLVFAGALDCF 894
                ++  ++E     G L   
Sbjct: 1436 --GGVSSTLVEKFDEMGILGNL 1455



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +      V    H++ S ++   ++ +++D  A    PAIAITD  N+ S      +A  
Sbjct: 337 MPADQKRVEFHAHTNMSTMDALPTVESLIDTAAKWGHPAIAITDHANVQSFPHGYHRAKK 396

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 397 AGIKAIF 403


>gi|319745868|gb|EFV98158.1| DNA polymerase III PolC [Streptococcus agalactiae ATCC 13813]
          Length = 1468

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 158/922 (17%), Positives = 315/922 (34%), Gaps = 175/922 (18%)

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
            M+ N K+  +       +    + V    G + + +LVS   +    +   RI  S L +
Sbjct: 603  MELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVSLSNVK-YFEGVARIPRSVL-D 660

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRG 191
               EGL++ T  S G +  A   N    A      +         ++   +  +L +   
Sbjct: 661  AHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYDFIEVMPPAIYRPLVVRDLIKDEA 720

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKD 244
              +     ++++    + P++AT N  ++  ED    +++         +  +    +  
Sbjct: 721  GIQQIIRDLIEVGRRLDKPVLATGNVHYIEPEDEIYREIIVRSLGQGAMINRTIGRGEDA 780

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            +P   P  + +  +EM+  F+ L + L   + +    +F  +                  
Sbjct: 781  QPAPLPKAHFRTTNEMLDEFAFLGKDLAYEIVVTNTNTFADRFED--------------V 826

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFL 358
            +  + +L    V   E R+A+   AK +             R++ EL  I    F+  +L
Sbjct: 827  EVVKGDLYTPFVDRAEERVAELTYAKAFEIYGNPLPDIIDLRIEKELASILGNGFAVIYL 886

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------ 400
                 +Q + +    VG  RGS   S  A  + IT+++P+                    
Sbjct: 887  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSC 945

Query: 401  -----------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  D +      V++ 
Sbjct: 946  GSGYDLPNKNCPKCGTLYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDI 1005

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++  K A   V +  +  Y++                          
Sbjct: 1006 FGEEYAFRAGTVGTVAEKTAFGFV-KGYERDYNK-------------------------- 1038

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---D 552
                   D  V+RL   +    G+ R    H  GIV+      +    P+          
Sbjct: 1039 ----FYNDAEVERL---ATGAAGVKRSTGQHPGGIVVIPNYMDVYDFTPVQYPADDMTAA 1091

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K  D        +D S I  DD +   L 
Sbjct: 1092 WQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDL-----SGIDPSNILPDDPDVMKLF 1145

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +    LG+ + E  G    + G+       +  +V+   P     ++  +   +G +  +
Sbjct: 1146 SGTEVLGVTE-EQIGTPTGMLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHGTDVWL 1204

Query: 673  -SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQ 728
             +   LI   +     VI  ++ +M            + +  + +R+ +  KI E    +
Sbjct: 1205 GNAQDLIKEGIATLSTVIGCRDDIMVYLMHAGLQPKMAFTIMERVRKGLWLKISE---DE 1261

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  +I     N +      +  ++      Y F K+HAAAY +++ + A+ K HYP+ + 
Sbjct: 1262 RNGYIQAMRDNNVPDWYIESCGKI-----KYMFPKAHAAAYVLMALRVAYFKVHYPIFYY 1316

Query: 789  AASMTLE--------------------MDNVEKIK---------------KFCQDARQFN 813
             A  ++                      D  EK +               +   +  +  
Sbjct: 1317 CAYFSIRAKAFELRTMSAGLDAVKARMKDITEKRQRNEATNVENDLFTTLELVNEMLERG 1376

Query: 814  IQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             +        +   DF + ++ +     A++G+G   A+ I+ A  D  F S  +   R 
Sbjct: 1377 FKFGKLDLYRSHATDFIIEEDTLIPPFVAMEGLGENVAKQIVRAREDGEFLSKTELRKR- 1435

Query: 873  DSKKLNRRVLESLVFAGALDCF 894
                ++  ++E     G L   
Sbjct: 1436 --GGVSSTLVEKFDEMGILGNL 1455



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +      V    H++ S ++   ++ +++D  A    PAIAITD  N+ S      +A  
Sbjct: 337 MPADQKRVEFHAHTNMSTMDALPTVESLIDTAAKWGHPAIAITDHANVQSFPHGYHRAKK 396

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 397 AGIKAIF 403


>gi|310658999|ref|YP_003936720.1| DNA polymerase III polc [Clostridium sticklandii DSM 519]
 gi|308825777|emb|CBH21815.1| DNA polymerase III PolC [Clostridium sticklandii]
          Length = 1417

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 174/955 (18%), Positives = 329/955 (34%), Gaps = 212/955 (22%)

Query: 57   EFSQKACAAGIQPIIGCQLDIDMQDN---LKMTNQGKTPFPTVP--SIVLLVSTAEGYQR 111
                 A A  +  I   ++ ID   N   +     GK  + ++P   I ++     G + 
Sbjct: 549  RAVDDAKATALVFIKFMEMLIDKDINTFEMVNDKLGKLDYKSIPSNHITIIARDYTGLKN 608

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L +L+S  ++ D   ++ RI  S L +   EGL++ +   +G + +A     S      +
Sbjct: 609  LYKLISASHI-DYFYKNPRIPKSLLIK-HREGLLIGSACEAGELYQAVLRRKSDEEIDEI 666

Query: 172  LTFKKLF------GDRLYV--NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEE 223
             +F           +   +  N  +     +     ++ +A  +    VAT++  F++ E
Sbjct: 667  ASFYDYVEVMPTSNNNFMIRKNSVKDEIELQTINKTIIDIAIRNNKIPVATSDVHFINPE 726

Query: 224  DYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL-PE-----ALENTVEI 277
            D     VL         ++      +   Y K   EM+  FS L PE      +ENT +I
Sbjct: 727  DEAYRTVLKHSLGFKDANE------STPLYFKTTQEMLDDFSYLEPELANEIVIENTNKI 780

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
            A     IL V     P  IE          + ELR                      +  
Sbjct: 781  ADMIEDILPVPDGTYPPRIEGS--------DEELRQMCFDKARNIYGDNL------PEIV 826

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             +RL+ EL  I    ++  ++I    +  + ++   VG  RGS   S  A    IT+++P
Sbjct: 827  EKRLERELGSIISNGYAVMYIIAQKLVTKSMQDGYLVG-SRGSVGSSFAATMSDITEVNP 885

Query: 398  LR-----------------------------------------FSLLFERFLNPDRMSMP 416
            L                                            + FE FL  +    P
Sbjct: 886  LPPHYVCSNCKYSHFITDGSYGSGADLPDKLCPDCNTNLTKDGHDIPFEVFLGFEGDKEP 945

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D++F  + +    +Y +  +G   V +  T G++  K A     + ++    + +   
Sbjct: 946  DIDLNFAGEYQPNAHKYTEELFGKGYVFRAGTIGTIAEKTAYGFAKKYIEENEIEANG-- 1003

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                            A+  R +                    G+ R +  H  G+++  
Sbjct: 1004 ----------------AEVERLK----------------SGCTGIKRTSGQHPGGVMVVP 1031

Query: 537  R--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
                +    P+     D  S +  T F+   I    ++K D LG    ++++   D    
Sbjct: 1032 DYKEIFDFSPIQYPANDSSSGVITTHFDYHSI-SGRILKLDILGHDVPSIIKMLEDL--- 1087

Query: 592  RGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQP 637
                 + + IP DD +T  L T+               G+LGI +  +  +RQ L   QP
Sbjct: 1088 --TDTNATKIPLDDKDTMSLFTSTQKLGCDLSAINCTVGSLGIPEFGTKFVRQMLIDTQP 1145

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
                +++ +  L     +               I +   L+   + E + VI  ++ +M 
Sbjct: 1146 TTFAELVRISGLSHGTDV--------------WINNAQELVRNKVAELKDVISTRDDIMN 1191

Query: 698  IAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
               L+      +    + +R+  G   +   D              + +    + +    
Sbjct: 1192 YLILMGLKPKTAFKIMENVRKGKGLTDEHIQD--------------MKEKNVPSWYIDSC 1237

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------K 801
                Y F K+HAAAY ++S++ A+ K H+   F A   T + ++ +             K
Sbjct: 1238 NKIKYMFPKAHAAAYVMMSFRIAYYKVHHKEAFYATYFTTKAEDFDIALISKGKDAVLEK 1297

Query: 802  IKKF--------------------CQDARQFNIQIMPPSVNTPCVD-FKV-GDNRIYYSL 839
            +K+                       +     +++    +       FK+  D  +   L
Sbjct: 1298 LKELESLGNKATAKEKNIATVLEVAYEMFSRGVKLDRLDLYKSHSKVFKLSSDKALIPPL 1357

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             +++G+G T A +I   S+ + F S+EDF  R    K  + V+E+L+  G L+  
Sbjct: 1358 ISMQGLGETVAINIANESS-REFMSIEDFRQRT---KATKTVIETLISYGCLNSL 1408



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 2/107 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++    +  ++ K       AIAITD   + +  E  +     G++ I+
Sbjct: 321 VELHAHTNMSAMDAIPGVKALIKKAKEFGHKAIAITDHGVVQAFPEAMEVGQNEGVK-IL 379

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
                  + D  K+             +V  + T  G+    + ++ 
Sbjct: 380 YGVEGYLVNDMSKIVTIDTEGDFEDEYVVFDIET-TGFSNTSDEITE 425


>gi|225375372|ref|ZP_03752593.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM
            16841]
 gi|225212861|gb|EEG95215.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM
            16841]
          Length = 1512

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 168/954 (17%), Positives = 318/954 (33%), Gaps = 194/954 (20%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +     G++ +      +       M              ++L +   G   L  L
Sbjct: 645  VKFIEMLKERGMENLDDVNHMVSTSPETVMKMP-------TYHAIILATNDIGRINLYRL 697

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS  +L    K+  R+  S   +   EGL++ +   +G + RA      Q    RL+ F 
Sbjct: 698  VSLSHLTYYNKR-PRVPKSEFVKY-REGLLLGSACEAGELYRAIVGGRPQEEIIRLVKFY 755

Query: 175  -----KKLFGDRLYV----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
                 + L  +   +             +    ++ +L       +VAT +  FL  ED 
Sbjct: 756  DYLEIQPLGNNEFMLRSDKEPVNTMEELQDINRRICRLGEEFNKLVVATCDVHFLDPEDE 815

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA------LENTVEIAR 279
                ++MA        +          YL+   EM+  F  L  A      + N  +IA 
Sbjct: 816  IYRRIIMAGKGFKDADE------QAPLYLRTTEEMLKEFEYLGSAKAEEVVITNPNKIAD 869

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
             C  I  V     P FIE          +  LR+           +            ++
Sbjct: 870  MCEKIAPVRPDKCPPFIE--------NSDQMLRDICYNKAHSMYGEEL------PPIVKE 915

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RLD ELN I    ++  ++I    +  + ++   VG  RGS   S  A    IT+++PL+
Sbjct: 916  RLDRELNSIISNGYAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFAATMSGITEVNPLQ 974

Query: 400  ---------------------------------------------FSLLFERFLNPDRMS 414
                                                         F + FE FL      
Sbjct: 975  AHYRCEYCKYSDFDSPEVKAFSGRSGCDMPDKICPVCGKKLVKDGFDIPFETFLGFKGNK 1034

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D++F  + + +   Y +  +G+ +  +  T G+L  K A   +             
Sbjct: 1035 EPDIDLNFSGEYQSKAHAYCEVIFGYGQTFRAGTIGTLADKTAFGYIKNYY--------- 1085

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
                                    R     +  +DR++   Q   G+ R    H  GIV+
Sbjct: 1086 ----------------------EERGIHKRNCEIDRIV---QGCVGVRRTTGQHPGGIVV 1120

Query: 535  GD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
                  ++   P+             T F+   I+   L+K D LG    T+++   D  
Sbjct: 1121 LPVGEEINTFTPVQHPANDMTTATVTTHFDYHSIDH-NLLKLDILGHDDPTMIRMLQDLT 1179

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                  +D   IP DD     L      LG+   + +G+     G+     +  + +V  
Sbjct: 1180 G-----LDPQTIPLDDQTVMSLFMNTSALGVEPEDINGIPLGCLGIPEFGTDFAMQMVID 1234

Query: 650  YRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS----- 703
             +P    +++  +   +G +  + +   LI+  +      I  ++ +M     +      
Sbjct: 1235 AKPTEFSDLIRISGLSHGTDVWLGNAQTLIEQGIATISTAICTRDDIMIYLISMGLDSEQ 1294

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
             +++ E+    + + ++ KEEM             + + +    +  ++      Y F K
Sbjct: 1295 SFTIMESVRKGKGLKEEWKEEM-----------RAHNVPEWYIDSCLKI-----KYMFPK 1338

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLE---------------------------- 795
            +HAAAY +++++ A+ K  YP+ + AA  ++                             
Sbjct: 1339 AHAAAYVMMAWRIAYCKVFYPLAYYAAYFSIRATGFNYEIMCQGKERLEYFYKDYTRRKD 1398

Query: 796  -----MDNVEKIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTT 849
                   +V +  +  Q+         P  +       F++ D ++  +L  I+G+G   
Sbjct: 1399 SLSKKEQDVYRDMRIVQEMYARGFDFTPIDIYRALPGRFQIIDGKLMPALNTIEGMGDNA 1458

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            A  + EA+ D  F S +DF  R    K    ++  L   G  D    +++ L  
Sbjct: 1459 AIAVAEAAKDGKFLSKDDFRQRTKVTKSTIDLMADLGLLG--DMPESNQLSLFD 1510



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 2   TQYLEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           T  ++ SP   V L  H+  S ++G     +I+ +       AIAITD  ++ +  + + 
Sbjct: 392 TTRMDTSPEKRVELHCHTKMSDMDGVSECKDIVKRAMKWGHKAIAITDHGDVQAFPDANH 451

Query: 61  K 61
            
Sbjct: 452 A 452


>gi|77405656|ref|ZP_00782744.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae H36B]
 gi|77175729|gb|EAO78510.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae H36B]
          Length = 1468

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 158/922 (17%), Positives = 315/922 (34%), Gaps = 175/922 (18%)

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
            M+ N K+  +       +    + V    G + + +LVS   +    +   RI  S L +
Sbjct: 603  MELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVSLSNVK-YFEGVARIPRSVL-D 660

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRG 191
               EGL++ T  S G +  A   N    A      +         ++   +  +L +   
Sbjct: 661  AHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYDFIEVMPPAIYRPLVVRDLIKDEA 720

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKD 244
              +     ++++    + P++AT N  ++  ED    +++         +  +    +  
Sbjct: 721  GIQQIIRDLIEVGRRLDKPVLATGNVHYIEPEDEIYREIIVRSLGQGAMINRTIGRGEDA 780

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            +P   P  + +  +EM+  F+ L + L   + +    +F  +                  
Sbjct: 781  QPAPLPKAHFRTTNEMLDEFAFLGKDLAYEIVVTNTNTFADRFED--------------V 826

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFL 358
            +  + +L    V   E R+A+   AK +             R++ EL  I    F+  +L
Sbjct: 827  EVVKGDLYTPFVDRAEERVAELTYAKAFEIYGNPLPDIIDLRIEKELASILGNGFAVIYL 886

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------ 400
                 +Q + +    VG  RGS   S  A  + IT+++P+                    
Sbjct: 887  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSC 945

Query: 401  -----------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  D +      V++ 
Sbjct: 946  GSGYDLPNKNCPKCGTLYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDI 1005

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++  K A   V +  +  Y++                          
Sbjct: 1006 FGEEYAFRAGTVGTVAEKTAFGFV-KGYERDYNK-------------------------- 1038

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---D 552
                   D  V+RL   +    G+ R    H  GIV+      +    P+          
Sbjct: 1039 ----FYNDAEVERL---ATGAAGVKRSTGQHPGGIVVIPNYMDVYDFTPVQYPADDMTAA 1091

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K  D        +D S I  DD +   L 
Sbjct: 1092 WQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDL-----SGIDPSNILPDDPDVMKLF 1145

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +    LG+ + E  G    + G+       +  +V+   P     ++  +   +G +  +
Sbjct: 1146 SGTEVLGVTE-EQIGTPTGMLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHGTDVWL 1204

Query: 673  -SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQ 728
             +   LI   +     VI  ++ +M            + +  + +R+ +  KI E    +
Sbjct: 1205 GNAQDLIKEGIATLSTVIGCRDDIMVYLMHAGLQPKMAFTIMERVRKGLWLKISE---DE 1261

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  +I     N +      +  ++      Y F K+HAAAY +++ + A+ K HYP+ + 
Sbjct: 1262 RNGYIQAMRDNNVPDWYIESCGKI-----KYMFPKAHAAAYVLMALRVAYFKVHYPIFYY 1316

Query: 789  AASMTLE--------------------MDNVEKIK---------------KFCQDARQFN 813
             A  ++                      D  EK +               +   +  +  
Sbjct: 1317 CAYFSIRAKAFELRTMSAGLDAVKARMKDITEKRQRNEATNVENDLFTTLELVNEMLERG 1376

Query: 814  IQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             +        +   DF + ++ +     A++G+G   A+ I+ A  D  F S  +   R 
Sbjct: 1377 FKFGKLDLYRSHATDFIIEEDTLIPPFVAMEGLGENVAKQIVRAREDGEFLSKTELRKR- 1435

Query: 873  DSKKLNRRVLESLVFAGALDCF 894
                ++  ++E     G L   
Sbjct: 1436 --GGVSSTLVEKFDEMGILGNL 1455



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +      V    H++ S ++   ++ +++D  A    PAIAITD  N+ S      +A  
Sbjct: 337 MPADQKRVEFHAHTNMSTMDALPTVESLIDTAAKWGHPAIAITDHANVQSFPHGYHRAKK 396

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 397 AGIKAIF 403


>gi|15902295|ref|NP_357845.1| DNA polymerase III PolC [Streptococcus pneumoniae R6]
 gi|116515846|ref|YP_815772.1| DNA polymerase III PolC [Streptococcus pneumoniae D39]
 gi|32469721|sp|Q8DRA5|DPO3_STRR6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|122279342|sp|Q04MH6|DPO3_STRP2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|15457800|gb|AAK99055.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae R6]
 gi|116076422|gb|ABJ54142.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae D39]
          Length = 1463

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 313/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVSRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNKIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGIEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|76787214|ref|YP_330464.1| DNA polymerase III PolC [Streptococcus agalactiae A909]
 gi|76562271|gb|ABA44855.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae A909]
          Length = 1468

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 158/922 (17%), Positives = 315/922 (34%), Gaps = 175/922 (18%)

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
            M+ N K+  +       +    + V    G + + +LVS   +    +   RI  S L +
Sbjct: 603  MELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVSLSNVK-YFEGVARIPRSVL-D 660

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRG 191
               EGL++ T  S G +  A   N    A      +         ++   +  +L +   
Sbjct: 661  AHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYDFIEVMPPAIYRPLVVRDLIKDEA 720

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKD 244
              +     ++++    + P++AT N  ++  ED    +++         +  +    +  
Sbjct: 721  GIQQIIRDLIEVGRRLDKPVLATGNVHYIEPEDEIYREIIVRSLGQGAMINRTIGRGEDA 780

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            +P   P  + +  +EM+  F+ L + L   + +    +F  +                  
Sbjct: 781  QPAPLPKAHFRTTNEMLDEFAFLGKDLAYEIVVTNTNTFADRFED--------------V 826

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFL 358
            +  + +L    V   E R+A+   AK +             R++ EL  I    F+  +L
Sbjct: 827  EVVKGDLYTPFVDRAEERVAELTYAKAFEIYGNPLPDIIDLRIEKELASILGNGFAVIYL 886

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------ 400
                 +Q + +    VG  RGS   S  A  + IT+++P+                    
Sbjct: 887  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSC 945

Query: 401  -----------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  D +      V++ 
Sbjct: 946  GSGYDLPNKNCPKCGTLYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDI 1005

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++  K A   V +  +  Y++                          
Sbjct: 1006 FGEEYAFRAGTVGTVAEKTAFGFV-KGYERDYNK-------------------------- 1038

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---D 552
                   D  V+RL   +    G+ R    H  GIV+      +    P+          
Sbjct: 1039 ----FYNDAEVERL---ATGAAGVKRSTGQHPGGIVVIPNYMDVYDFTPVQYPADDMTAA 1091

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K  D        +D S I  DD +   L 
Sbjct: 1092 WQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDL-----SGIDPSNILPDDPDVMKLF 1145

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +    LG+ + E  G    + G+       +  +V+   P     ++  +   +G +  +
Sbjct: 1146 SGTEVLGVTE-EQIGTPTGMLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHGTDVWL 1204

Query: 673  -SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQ 728
             +   LI   +     VI  ++ +M            + +  + +R+ +  KI E    +
Sbjct: 1205 GNAQDLIKEGIATLSTVIGCRDDIMVYLMHAGLQPKMAFTIMERVRKGLWLKISE---DE 1261

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  +I     N +      +  ++      Y F K+HAAAY +++ + A+ K HYP+ + 
Sbjct: 1262 RNGYIQAMRDNNVPDWYIESCGKI-----KYMFPKAHAAAYVLMALRVAYFKVHYPIFYY 1316

Query: 789  AASMTLE--------------------MDNVEKIK---------------KFCQDARQFN 813
             A  ++                      D  EK +               +   +  +  
Sbjct: 1317 CAYFSIRAKAFELRTMSAGLDAVKARMKDITEKRQRNEATNVENDLFTTLELVNEMLERG 1376

Query: 814  IQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             +        +   DF + ++ +     A++G+G   A+ I+ A  D  F S  +   R 
Sbjct: 1377 FKFGKLDLYRSHATDFIIEEDTLIPPFVAMEGLGENVAKQIVRAREDGEFLSKTELRKR- 1435

Query: 873  DSKKLNRRVLESLVFAGALDCF 894
                ++  ++E     G L   
Sbjct: 1436 --GGVSSTLVEKFDEMGILGNL 1455



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +      V    H++ S ++   ++ +++D  A    PAIAITD  N+ S      +A  
Sbjct: 337 MPADQKRVEFHAHTNMSTMDALPTVESLIDTAAKWGHPAIAITDHANVQSFPHGYHRAKK 396

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 397 AGIKAIF 403


>gi|149408369|ref|YP_001294472.1| hypothetical protein ORF055 [Pseudomonas phage F8]
          Length = 1035

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 204/863 (23%), Positives = 357/863 (41%), Gaps = 98/863 (11%)

Query: 10  SFVHLQVHSSYSLLEGAL--SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SF  L+V S YS   GA       I+++    + P +AI D    +  + + Q A  A +
Sbjct: 2   SFPQLRVRSGYS--YGAAYGRFPEIIERAKEIESPFVAIVDDGT-WGHVRWEQAATKAEL 58

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
               G ++ I   D+     + K           L       ++   L S+         
Sbjct: 59  PRGFGMEIPIKCADDGDKELKLKA--------WALAKDT---RKFYRLTSKT-------- 99

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                      +  +GL         P +        + A +          D + +N  
Sbjct: 100 -----------VQNQGL--------SPQEFQDADGVIKFAGEAYAYLDLAGIDYIDIN-- 138

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVAT--NNSLFLSEED-YEAHDVLMAVAHSTVVSQKD 244
                        ++ A     P+V T  N+   +   D   A  V  +V    + ++++
Sbjct: 139 ---PASMVAAHGAMETARAFGKPVVITSYNDMPSIDHADFASAWKVRESVGLRHIATEEE 195

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               T   ++  R E         +A+ NT  +A + + +    AP++            
Sbjct: 196 LW--TRLRHIMTREE-------FDKAIANTHAVAEQLADVQLAKAPMIH----------- 235

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              + ++   A  G   RL++G I      Q Y  R   E+  I    F  YFL+VAD +
Sbjct: 236 --LDGDIVALAREGQAYRLSRGHIK--EWTQIYEDRFQEEIKQIQLKDFDSYFLVVADLV 291

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +AKK+ + VGP RGS AGS+  Y L IT++DPL   LLF+RF++  R  +PD DIDF  
Sbjct: 292 AFAKKH-MLVGPARGSSAGSLVCYLLGITEVDPLPHRLLFQRFIDISRSDLPDIDIDFAD 350

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DP 483
             R  V  Y+Q KYG   V ++    +L+A + +  VG+   +P+   D +   I     
Sbjct: 351 THRYLVFEYLQQKYGTWNVVKLGNINTLKAASVIAHVGKRFGIPFHDTDNIKNSIIEYTS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG----LYRHASTHAAGIVIGDRPL 539
           A     + + D     E            E++    G       H+  HAAGI++ +  +
Sbjct: 411 ADERYGKGLEDT---FEKTQPGRDFREKYEVASACMGDLEIHPSHSGVHAAGILVCNDEV 467

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
                +  +      + Q +    E   L+K D LGL+TL ++Q +           +L 
Sbjct: 468 IDFCTVTSEG-----IAQLDKPDSEYLNLLKIDALGLRTLGVIQDA-----NCVTAQELY 517

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            +P +D     +L      GIFQ E   +R     +     E+I  + +L RPGP+ + +
Sbjct: 518 DLPLNDKAVLDVLNEDKMSGIFQFEGQAVRSVANAINITAFENIDHITALARPGPLSSGM 577

Query: 660 --VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
              Y  R  G+E +    P ++  L  T GV +YQEQ+M I + +  +   +   +R+AM
Sbjct: 578 ATKYIERVAGREPVTYTIPQVEQYLSGTYGVFLYQEQIMSIVKDIGQFDWEQTSAIRKAM 637

Query: 718 GKKIKEE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             +  EE  +K++E FI GA   G++   A  +++ +  F  +GFN+SH+ +YAV++Y T
Sbjct: 638 SARKGEEFFNKRRELFIEGAKTIGVAPEDAHRVWQEMVTFGAWGFNRSHSVSYAVVTYWT 697

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            +MK ++ +E+ AA +    D+ + +    + A++  ++          +++ V D R+ 
Sbjct: 698 CYMKRYHRLEYAAACLRAAKDDQQTVSILRELAKE-GVEYTALDPEHSELNWVVADGRLI 756

Query: 837 YSLAAIKGVGTTTARHIMEASAD 859
             +   KG G   A   +    +
Sbjct: 757 GGIMNAKGFGPAKAERFLRLREE 779


>gi|77412300|ref|ZP_00788615.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae CJB111]
 gi|77161647|gb|EAO72643.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae CJB111]
          Length = 1468

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 158/922 (17%), Positives = 315/922 (34%), Gaps = 175/922 (18%)

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
            M+ N K+  +       +    + V    G + + +LVS   +    +   RI  S L +
Sbjct: 603  MELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVSLSNVK-YFEGVARIPRSVL-D 660

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQRHRG 191
               EGL++ T  S G +  A   N    A      +         ++   +  +L +   
Sbjct: 661  AHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYDFIEVMPPAIYRPLVVRDLIKDEA 720

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKD 244
              +     ++++    + P++AT N  ++  ED    +++         +  +    +  
Sbjct: 721  GIQQIIRDLIEVGRRLDKPVLATGNVHYIEPEDEIYREIIVRSLGQGAMINRTIGRGEDA 780

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            +P   P  + +  +EM+  F+ L + L   + +    +F  +                  
Sbjct: 781  QPAPLPKAHFRTTNEMLDEFAFLGKDLAYEIVVTNTNTFADRFED--------------V 826

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFL 358
            +  + +L    V   E R+A+   AK +             R++ EL  I    F+  +L
Sbjct: 827  EVVKGDLYTPFVDRAEERVAELTYAKAFEIYGNPLPDIIDLRIEKELASILGNGFAVIYL 886

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------ 400
                 +Q + +    VG  RGS   S  A  + IT+++P+                    
Sbjct: 887  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSC 945

Query: 401  -----------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  D +      V++ 
Sbjct: 946  GSGYDLPNKNCPKCGTLYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDI 1005

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++  K A   V +  +  Y++                          
Sbjct: 1006 FGEEYAFRAGTVGTVAEKTAFGFV-KGYERDYNK-------------------------- 1038

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---D 552
                   D  V+RL   +    G+ R    H  GIV+      +    P+          
Sbjct: 1039 ----FYNDAEVERL---ATGAAGVKRSTGQHPGGIVVIPNYMDVYDFTPVQYPADDMTAA 1091

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K  D        +D S I  DD +   L 
Sbjct: 1092 WQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDL-----SGIDPSNILPDDPDVMKLF 1145

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +    LG+ + E  G    + G+       +  +V+   P     ++  +   +G +  +
Sbjct: 1146 SGTEVLGVTE-EQIGTPTGMLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHGTDVWL 1204

Query: 673  -SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQ 728
             +   LI   +     VI  ++ +M            + +  + +R+ +  KI E    +
Sbjct: 1205 GNAQDLIKEGIATLSTVIGCRDDIMVYLMHAGLQPKMAFTIMERVRKGLWLKISE---DE 1261

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  +I     N +      +  ++      Y F K+HAAAY +++ + A+ K HYP+ + 
Sbjct: 1262 RNGYIQAMRDNNVPDWYIESCGKI-----KYMFPKAHAAAYVLMALRVAYFKVHYPIFYY 1316

Query: 789  AASMTLE--------------------MDNVEKIK---------------KFCQDARQFN 813
             A  ++                      D  EK +               +   +  +  
Sbjct: 1317 CAYFSIRAKAFELRTMSAGLDAVKARMKDITEKRQRNEATNVENDLFTTLELVNEMLERG 1376

Query: 814  IQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             +        +   DF + ++ +     A++G+G   A+ I+ A  D  F S  +   R 
Sbjct: 1377 FKFGKLDLYRSHATDFIIEEDTLIPPFVAMEGLGENVAKQIVRAREDGEFLSKTELRKR- 1435

Query: 873  DSKKLNRRVLESLVFAGALDCF 894
                ++  ++E     G L   
Sbjct: 1436 --GGVSSTLVEKFDEMGILGNL 1455



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +      V    H++ S ++   ++ +++D  A    PAIAITD  N+ S      +A  
Sbjct: 337 MPADQKRVEFHAHTNMSTMDALPTVESLIDTAAKWGHPAIAITDHANVQSFPHGYHRAKK 396

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 397 AGIKAIF 403


>gi|329929349|ref|ZP_08283102.1| DNA polymerase III, alpha subunit, Gram-positive type [Paenibacillus
            sp. HGF5]
 gi|328936718|gb|EGG33161.1| DNA polymerase III, alpha subunit, Gram-positive type [Paenibacillus
            sp. HGF5]
          Length = 1438

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 179/961 (18%), Positives = 327/961 (34%), Gaps = 208/961 (21%)

Query: 45   AITDTNNLFSALE--FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            AI DT  L   L    S      G++ +          D L                 + 
Sbjct: 566  AIDDTIALAGILNGLLSDVDKTKGVKML----------DRLNDYVGTDLSNTRPFHCGIY 615

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
                 G + L +L+S  +  +  K+   I  S LQE+  +GL++L+G   G         
Sbjct: 616  ALNMTGKKNLYKLISMSHT-EYFKRVPCIPKSKLQEM-RDGLLVLSGCEKGEFFETVLNK 673

Query: 163  SSQVAEKRLLTFK--KLFGDRLYVNLQR---HRGYDRYR--ESQVVQLAYTHELPLVATN 215
            + + AE+    +   ++    +Y++L         +  +   S+VV++      P++AT 
Sbjct: 674  TEEEAEEIAGFYDVLEIQPLTMYMHLVDKGLVGSPEEIKTAISKVVRIGEKLNKPVIATG 733

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ 269
            N  +L   D    D+ +   H        +    PD + +   EM+  F  L +      
Sbjct: 734  NVHYLEPRDKLFRDITI---HGITGFSPLKDMRKPDAHFRTTEEMLQEFEFLGQDKCYEV 790

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
             + NT E+A R    L++       F +K    I    + E+RN      +    +    
Sbjct: 791  VVTNTSELADRFE-ELEL-------FPDKLFTPILDGADEEIRNTCYDTAKSIYGENL-- 840

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                 +    RL+ EL  I +  FS  +LI    ++ + ++   VG  RGS   SV A  
Sbjct: 841  ----PEVVVARLEKELEPIIKYGFSANYLISEKLVKKSNRDGYLVG-SRGSVGSSVVATF 895

Query: 390  LTITDIDPLR-------------------------------------------FSLLFER 406
            L I++++PL                                              + FE 
Sbjct: 896  LGISEVNPLPAHYICLNSDCKHSEWFLDGSVPSGFDLPDKACPECGNMMKGEGQDIPFET 955

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL      +PD D++F  + +     + +  +G E V +  T G++  K A     +  +
Sbjct: 956  FLGFKGDKVPDIDLNFSGEYQPHAHNFTKEMFGEENVFRAGTIGTVAEKTAFGFAKKYEE 1015

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
                                       ++ R+R A         L  ++    G+ R   
Sbjct: 1016 H--------------------------NNKRWRGA--------ELNRLASGCTGVKRSTG 1041

Query: 527  THAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  GIV+      + ++ P+     DV ++   T F+    E   L+K D LG    T+
Sbjct: 1042 QHPGGIVVVPDYIEVEEITPVQFPADDVNAEWKTTHFDYHAFEA-NLLKLDILGHDDPTM 1100

Query: 582  LQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLESSG 627
            ++   D        VD + IP +D +   +  +                T G+ ++ +  
Sbjct: 1101 MRMLQDLTG-----VDPTTIPMNDPKVMSMFNSTEALGVKPEQIRSPVATFGVPEMGTKF 1155

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            +RQ L   QP    D++ +  L     +                 +   LI       + 
Sbjct: 1156 VRQMLVESQPSSFADLLQISGLSHGTGVWLG--------------NAQELIKNGTCNIKT 1201

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            VI  ++ +M      +G   S A  +  ++ K      +   E          + K    
Sbjct: 1202 VIGCRDDIMLFLIYKAGMDASLAFKITESVRKGRGLSQEWIDE----------MKKCKVP 1251

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------- 800
              +        Y F K+HAAAY + + +TA+ K +YP+E+ A   ++  ++ +       
Sbjct: 1252 QWYIDSCLKIQYMFPKAHAAAYVISAVRTAYFKLYYPIEYYATYFSVRAEDFDIELCCQG 1311

Query: 801  --KIKKFCQDARQFNIQIMPPS-------------------------VNTPCVDFKVGDN 833
               I +  ++  Q      P                             +  + FKV  +
Sbjct: 1312 YEAIYRRIEEIEQLGFGASPKEKGMLPILEMALEMTARGFSFKNIDLYQSDALRFKVDGD 1371

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +    +A+ G+G   AR+I  A     F S+EDF  +    K ++  +E L   G    
Sbjct: 1372 SLIPPFSALAGIGDNAARNIAAAREFGEFLSIEDFQQK---SKASKTAVELLTQMGCFRG 1428

Query: 894  F 894
             
Sbjct: 1429 L 1429



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++    ++  +   AA    AIA++D   +    + ++ A   GI+ + 
Sbjct: 335 VEFHLHTTMSTMDAVTPIDRYIKTAAAWGHKAIAVSDHGGVQCYPDAAKNAKKHGIKMMY 394

Query: 72  GC 73
           G 
Sbjct: 395 GV 396


>gi|160902928|ref|YP_001568509.1| DNA polymerase III PolC [Petrotoga mobilis SJ95]
 gi|160360572|gb|ABX32186.1| DNA polymerase III, alpha subunit [Petrotoga mobilis SJ95]
          Length = 1388

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 168/907 (18%), Positives = 311/907 (34%), Gaps = 197/907 (21%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +LV    G + L +LVS  ++     +  RI  S L  +    LI  +G   G I + +
Sbjct: 573  TILVKNKTGLKNLYKLVSNAHVK-YFYRVPRILKSELSRMREGLLIGSSGTEDGEIFQTY 631

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY---RESQVVQLAYTHELPLVATNN 216
                S      +  F           L      +         +  L     +P+V  +N
Sbjct: 632  LRGGSHDEIIEIAKFYDYLELTPLDALSDKTISEEQLKKIYQDIYNLGNELNMPVVMVSN 691

Query: 217  SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI----FSDLPEALE 272
            + +L +ED   ++ L           + R   +   YL+   EM+      F D   A +
Sbjct: 692  AHYLDKEDQIFYNALKVG--------EKRKTSSAHRYLRTTDEMIEEAQRIFGDKEIAEK 743

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
              +      +  +++  P+  +    + ++ + E E   + KA            I    
Sbjct: 744  IVITNTNEIADQIEIIKPLSNKLHPPKIENAEVEIEELAKKKAYE----------IYGNP 793

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              +    RL+ EL  I +  ++  +LI    +Q + ++   VG  RGS   S+ A  L I
Sbjct: 794  LPEIVESRLNRELESIVKHGYAVLYLIAQKIVQKSLEDGYLVG-SRGSVGSSLVATMLGI 852

Query: 393  TDIDPLRF-----------------------------------------SLLFERFLNPD 411
            T+I+PL                                            + FE F+  +
Sbjct: 853  TEINPLPPHYICPSCKNVEFFDKEEIGSGYDLVDKKCEKCGAKMKKDGQDIPFETFMGFE 912

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
               +PD D++F  D ++   +Y++  +G + V +  T  ++  + A     +  +     
Sbjct: 913  GDKIPDIDLNFSGDYQNMAHKYIEKMFGEDHVFRAGTISTIADRTAFGFAKKYCE----- 967

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                              Q I  +S              ++ I + + G+ R    H  G
Sbjct: 968  -----------------EQGIVKNSE-------------IMRIVKAITGVKRTTGQHPGG 997

Query: 532  IVIGD--RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            ++I      +    P+     D +S++  T F+   I    L+K D LG    T ++   
Sbjct: 998  LMIVPKEEEVYDYTPIQFPANDNKSNVQTTHFDYHVIHN-DLVKLDALGHDDPTFIKMMS 1056

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLLTTK---------------GTLGIFQLESSGMRQA 631
            D        VD   IP DD +T  L ++                GTLG+ +  ++ +R  
Sbjct: 1057 DLTG-----VDPMTIPMDDKKTLSLFSSTKALKIDLKNELGTTVGTLGVPEFGTTFVRMM 1111

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            LE  +P    +++ +  L     +   +  N               ID  +     VI  
Sbjct: 1112 LEDTRPKSFSELVRISGLSHGTDVWAGIAKNW--------------IDRKIATLDEVISC 1157

Query: 692  QEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++ +M            + S  + +R+  G   +E+++  KE                  
Sbjct: 1158 RDDIMNYLLSKGAPPKSAFSIMEKVRKGKGI-DEEDIELMKEL-------------KVPE 1203

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV--------- 799
             F +  +   Y F K+HAAAY  ++++ AW K HYP+ F +   T++ D           
Sbjct: 1204 WFIISCQKIKYLFPKAHAAAYVSMAFRIAWFKVHYPLAFYSTYFTVKGDEFNLKVIFSGR 1263

Query: 800  EKIKKFCQDARQF----------------------NIQIMPPSVNTPCV-DFKVGDNRIY 836
            + IKK   + R                                +N      F +  N + 
Sbjct: 1264 DAIKKRIFELRNMDLDVRKKNEMVVLELALEMMLRGYNFKMVDLNKSDSKKFLIDGNSLV 1323

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFG 895
                 +  +G   A +I+++     F S+EDF ++      NR  +E+L   G L D   
Sbjct: 1324 VPFIKVPNLGEKAAENIIKSRESG-FKSIEDFAAK---SGCNRTNVETLRELGVLKDLPE 1379

Query: 896  YSRMQLL 902
             ++M L 
Sbjct: 1380 TNQMSLF 1386



 Score = 77.7 bits (190), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 4/78 (5%)

Query: 3   QYLEKSPSF----VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
           + LE+  ++    V L +HS  S +EG L +  I+  I      A+AITD+  + S  EF
Sbjct: 282 ETLERKDNYPTKRVELHLHSKLSAMEGLLDVGEIVKTIKNWGHKAVAITDSGVVQSIPEF 341

Query: 59  SQKACAAGIQPIIGCQLD 76
            +KA A GI+PI G Q  
Sbjct: 342 YEKAVAVGIKPIFGIQAY 359


>gi|241895743|ref|ZP_04783039.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313]
 gi|241870786|gb|EER74537.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313]
          Length = 1437

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 162/931 (17%), Positives = 322/931 (34%), Gaps = 174/931 (18%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +    Q N  MT+            V+LV    G + L +L+S
Sbjct: 580  FLEEARE-------SYGITHADQLNDHMTDNDAWRHGRPNHAVVLVQNQTGVKNLYKLIS 632

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-- 175
               +     ++ R+  S L +   +GL++ TG SSG    A        A+ +   +   
Sbjct: 633  ESNIH-YLYRTPRVPRSVLNKY-RDGLLLGTGDSSGEFWEALMQKGYAAAKTKAKYYDYI 690

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++     Y+      L +     R    Q V++      P+V T +  +L+ ED     +
Sbjct: 691  EIQPSANYLPQIEGELIKDEARLRELMMQAVKIGDELNKPVVVTGDVHYLNPEDGIYRKI 750

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL-PE-----ALENTVEIARRCSFI 284
            L++       +        PD + +   E++  FS + PE      ++NT  +A     +
Sbjct: 751  LISSQGG---ANPLNRHSLPDLHFRTTQEVLDDFSWMKPELAKKLVIDNTHVVADMIDDV 807

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
              + +   P  +            +E+R K+      R+    +      +    R++ E
Sbjct: 808  EAIKSGNYPPNMP--------TANDEIRQKSYETA-YRMYGNPL-----PEIVEARIEQE 853

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----- 399
            LN I +  F+  +L+    +  + K+   VG  RGS   S+ A  + IT+++ L      
Sbjct: 854  LNSIIKNGFAVIYLVAQRLVAKSNKDGYLVG-SRGSVGSSLIALLIGITEVNALPPHYRS 912

Query: 400  ------------------------------------FSLLFERFLNPDRMSMPDFDIDFC 423
                                                 ++ FE FL      +PD D++F 
Sbjct: 913  VAGDYVEFVNPRDYESGYDLPERYSPIDGSKLIGDGHNIPFETFLGFKGNKVPDIDLNFS 972

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D +     Y+++ +G   V +  T  ++  K A   V +A +  + Q            
Sbjct: 973  GDYQPFAHNYMKSLFGENNVFRAGTIATVADKTAFGYV-KAYERDHDQ------------ 1019

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQ 541
                         +FR A +          ++    G+ R    H AGI+I      +  
Sbjct: 1020 -------------QFRGAEVE--------RLAMGATGVKRTTGQHPAGILIVPDDMEIYD 1058

Query: 542  LVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
              P+             T F+   I    ++K D LG    T+++   D        +D 
Sbjct: 1059 FTPIQYPADDLSATWRTTHFDFHSIHD-NILKMDILGHDDPTMIRALQDM-----SGIDP 1112

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D     L ++   LG+ + +    +    G+       +  ++    P     +
Sbjct: 1113 TTIPMNDPGVMSLFSSPEALGVTEDQI-FSKTGTLGVPEFGTAFVRGMLEETHPKNYSEL 1171

Query: 659  VVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +  +   +G +    +   LI+  +     VI  ++++M       G +   +  +   +
Sbjct: 1172 LQISGLSHGTDVWRGNADELIERGVATIGTVIGTRDKIMTDLINY-GVNPESSFQIMEKV 1230

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K      + Q E   +G  +  I   + +           Y F ++HAAAY +++ + A
Sbjct: 1231 RKGKGIVDEYQAEMRAAGVPEWYIESGLKIK----------YMFPRAHAAAYVLMALRIA 1280

Query: 778  WMKTHYPVEFLAASMTLEMDNVE-------------KIK--------------------K 804
            + K ++P  + AA  ++   N +             KI                     +
Sbjct: 1281 YFKVYFPTLYYAAYFSVRASNFDIVSMSRGLNSTKAKIMEIKHQGNDASAKDKDLLTVLE 1340

Query: 805  FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
               +A +  I      +     D + +  + +     ++ G+G   A+ I+ A A+  F 
Sbjct: 1341 IANEALERGITFSMVDLYKSDSDEWLIDGDTLIAPFNSVPGLGDNVAKRIVAARAEGEFL 1400

Query: 864  SLEDFCSRVDSKKLNRRVL-ESLVFAGALDC 893
            S ED   R    K   + + ++ V  G  D 
Sbjct: 1401 SKEDLAQRGGISKTLLQFMDDNGVLNGMPDE 1431



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS  S ++    + + + + +     AIAITDT       E +  A A  ++ I 
Sbjct: 335 VELHAHSLMSTMDATNGIKDYVKQASDWGMDAIAITDTAGAQGFPEAASSAAANDVKMIY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G ++++       + N           +V  V T
Sbjct: 395 GVEVNLVEDGEPIIFNPAHVELADAEYVVFDVET 428


>gi|330833568|ref|YP_004402393.1| DNA polymerase III PolC [Streptococcus suis ST3]
 gi|329307791|gb|AEB82207.1| DNA polymerase III PolC [Streptococcus suis ST3]
          Length = 1463

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 157/912 (17%), Positives = 306/912 (33%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++  +       V    L V    G + + +LVS        +   RI  + L     
Sbjct: 601  NTELIAEDSYKKARVKHATLYVINQVGLKNMFKLVSLSNTK-YFEGVPRIPRTVLN-AHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NLQRHRGYDR 194
            EGLI+ T    G +           A K    +   ++    LY         +      
Sbjct: 659  EGLILGTACQEGEVFDDLLSKGVDEAVKTAAYYDFIEVMPPALYAPMIAKEQFKDMAEIE 718

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-------VAHSTVVSQKDRPR 247
                Q++++     LP++AT N  ++  E+    ++++        +  +    +  +P 
Sbjct: 719  ETIKQLIEVGRRAGLPVLATGNVHYIDPEEEIYREIIVRALGQGAPINWTIGNGENAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR--FIEKECDDIQK 305
              P  + +  SEM+  F+ L E+L   + I    + + +     + +        +  ++
Sbjct: 779  PLPKAHFRTTSEMLDEFAFLGESLAREIVITNPNAMLDRFEDVQVVKTDLYTPYIEKAEE 838

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     +Q
Sbjct: 839  TVAELTYQKAFE----------IYGNPLPDIIDLRIEKELTSILGNGFAVIYLASQMLVQ 888

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++P+                           
Sbjct: 889  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSYGSGFDLP 947

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  D +      V++ +G E   
Sbjct: 948  DKDCEKCGTKYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEENAF 1007

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V R  +  Y +  R                              
Sbjct: 1008 RAGTVGTVAAKTAYGFV-RGYERDYGKFYR------------------------------ 1036

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +    G+ R    H  GI++      +    P+         +   T FN
Sbjct: 1037 DVEVERL---AAGAAGVKRTTGQHPGGIIVFPDYMDVYDFTPVQYPADDVTANWQTTHFN 1093

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D   IP DD     L +    LG
Sbjct: 1094 FHDIDE-NVLKLDVLGHDDPTMVRKLQDL-----SGIDPQTIPADDKGVMALFSGTEILG 1147

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            +   E  G    + G+       +  +V   +P     ++  +   +G +  + +   LI
Sbjct: 1148 VTP-EQIGTPTGMLGIPEFGTNFVRGMVEETKPTTFAELLQLSGLSHGTDVWLGNAQDLI 1206

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               + +   VI  ++ +M            + +  + +R+ +  KI EE   ++  +I  
Sbjct: 1207 KAGIADLSTVIGCRDDIMVYLMHAGLPPKMAFNIMERVRKGLWLKISEE---ERNGYIQA 1263

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
               N +      +  ++      Y F K+HAAAY +++ + A+ K HYP+ +  A  ++ 
Sbjct: 1264 MKDNKVPDWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHYPIYYYCAYFSIR 1318

Query: 796  MDNVE-------------KIKK----------------------FCQDARQFNIQIMPPS 820
                +             K+++                         +  +   +     
Sbjct: 1319 AKAFDLATMSGGLERVKAKMEEIALKKKNNEASNVEQDLYTTLELVNEMLERGFKFGKLD 1378

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   DF + D+ +     A+ G+G   A+ ++ A A+  F S  +   R        
Sbjct: 1379 LYKSHATDFLIEDDILIPPFVAMDGLGENVAKQVVAARAEGEFLSKTELRKRGGLSGT-- 1436

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1437 -LVEKMDEMGIL 1447



 Score = 85.4 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++ +++ + AA    A+AITD  N+ S       A  
Sbjct: 332 MPEGEKRVEFHAHTNMSTMDALPAVEDLVARAAAWGHKAVAITDHGNVQSFPHGYHAARK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGI+P+ G + +I         N+          +V  V T      L  + + +  +  
Sbjct: 392 AGIKPLFGMEANIVEDSVPIAYNEADVVLSDATYVVFDVETT----GLSAVNNALIQIAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D       S+  E+ L  F+    D +
Sbjct: 448 SKMHKGNIIAEFDEFIDPGHPLSQFTTDLTGITDEHVR--GSKPLEQVLREFQDFCQDSV 505

Query: 183 YVN 185
            V 
Sbjct: 506 MVA 508


>gi|223933907|ref|ZP_03625870.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
 gi|223897433|gb|EEF63831.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
          Length = 1463

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 157/912 (17%), Positives = 304/912 (33%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++  +       V    L V    G + + +LVS        +   RI  + L     
Sbjct: 601  NTELIAEDSYKKARVKHATLYVINQVGLKNMFKLVSLSNTK-YFEGVPRIPRTVLN-AHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NLQRHRGYDR 194
            EGLI+ T    G +           A K    +   ++    LY         +      
Sbjct: 659  EGLILGTACQEGEVFDDLLSKGIDEAVKTAAYYDFIEVMPPALYAPMIAKEQFKDMAEIE 718

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-------VAHSTVVSQKDRPR 247
                Q++++     LP++AT N  ++  E+    ++++        +  +    +  +P 
Sbjct: 719  ETIKQLIEVGRRAGLPVLATGNVHYIDPEEEIYREIIVRALGQGAPINWTIGNGENAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR--FIEKECDDIQK 305
              P  + +  SEM+  F+ L E+L   + I    + + +     + +        +  ++
Sbjct: 779  PLPKAHFRTTSEMLDEFAFLGESLAREIVITNPNAMLDRFEDVQVVKTDLYTPYIEKAEE 838

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     + 
Sbjct: 839  TVAELTYQKAFE----------IYGNPLPDIIDLRIEKELTSILGNGFAVIYLASQMLVH 888

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++P+                           
Sbjct: 889  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSYGSGFDLP 947

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  D +      V++ +G E   
Sbjct: 948  DKDCEKCGTKYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEENAF 1007

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V R  +  Y +  R                              
Sbjct: 1008 RAGTVGTVAAKTAYGFV-RGYERDYGKFYR------------------------------ 1036

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +    G+ R    H  GI++      +    P+             T FN
Sbjct: 1037 DVEVERL---AAGAAGVKRTTGQHPGGIIVFPDYMDVYDFTPVQYPADDVTASWQTTHFN 1093

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D   IP DD     L +    LG
Sbjct: 1094 FHDIDE-NVLKLDILGHDDPTMVRKLQDL-----SGIDPQTIPADDKGVMALFSGTEILG 1147

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            +   E  G    + G+       +  +V   +P     ++  +   +G +  + +   LI
Sbjct: 1148 VTP-EQIGTPTGMLGIPEFGTNFVRGMVEETKPTTFSELLQLSGLSHGTDVWLGNAQDLI 1206

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               +     VI  ++ +M            + +  + +R+ +  KI EE   ++  +I  
Sbjct: 1207 KAGIANLSTVIGCRDDIMVYLMHAGLPPKMAFNIMERVRKGLWLKISEE---ERNGYIQA 1263

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
               N +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1264 MKDNKVPDWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPLYYYCAYFSIR 1318

Query: 796  ---------MDNVEKIK--------------------------KFCQDARQFNIQIMPPS 820
                        ++K+K                          +   +  +   +     
Sbjct: 1319 AKAFDLATMSGGLDKVKAKMEEIALKKKNNEASNVEQDLYTTLELVNEMLERGFKFGKLD 1378

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   DF + DN +     A+ G+G   A+ ++ A A+  F S  +   R        
Sbjct: 1379 LYKSHATDFLIEDNTLIPPFVAMDGLGENVAKQVVAARAEGEFLSKTELRKRGGLSGT-- 1436

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1437 -LVEKMDEMGIL 1447



 Score = 85.4 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++ +++ + AA    A+AITD  N+ S       A  
Sbjct: 332 MPEGEKRVEFHAHTNMSTMDALPAVEDLVARAAAWGHKAVAITDHGNVQSFPHGYHAARK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGI+P+ G + +I         N+          +V  V T      L  + + +  +  
Sbjct: 392 AGIKPLFGMEANIVEDSVPIAYNEADVVLSDATYVVFDVETT----GLSAVNNALIQIAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D       S+  E+ L  F+    D +
Sbjct: 448 SKMHKGNIIAEFDEFIDPGHPLSQFTTDLTGITDEHVR--GSKPLEQVLREFQDFCQDSV 505

Query: 183 YVN 185
            V 
Sbjct: 506 MVA 508


>gi|225018411|ref|ZP_03707603.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum DSM
            5476]
 gi|224948829|gb|EEG30038.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum DSM
            5476]
          Length = 1453

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 170/946 (17%), Positives = 326/946 (34%), Gaps = 200/946 (21%)

Query: 54   SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
              + F++ A     + I    +      N  +              ++LV    G + L 
Sbjct: 586  GLV-FAEVAK----RLIQEKGVADIADINNCLGGAKDYKKLRTYHQIILVKNNTGLKNLY 640

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +LVS  +L +   +  R+  S L +   EGL++ +   +G + +A     S     ++  
Sbjct: 641  KLVSYGHL-NYFYKKPRVLKSDLVK-HREGLLIGSACEAGELYQAVADGKSWEDLCKIAD 698

Query: 174  F------KKLFGDRLYV--NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
            F      + +  +   +   L       +     +V+L      P+VAT +  F    D 
Sbjct: 699  FYDYLEIQPIGNNAFMIRSGLVPDEERLKEYNRTIVKLGEHLGKPVVATCDVHFQDAADA 758

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSF 283
                ++MA      +  KD     P  YL+   EM+  F+ L E  A E  V    + + 
Sbjct: 759  NYRAIIMAA-----LKFKDADNQAP-LYLRTTDEMLKEFAYLGEEKAYEVVVTNTNKIAD 812

Query: 284  ILQ-VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
            +++    PI       + +      E +L+       +              +  + RLD
Sbjct: 813  MVEGDLRPIPKGTYTPKIEGA----EEDLQRITWQRAKDMYGDPV------PELVKNRLD 862

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             EL+ I +  FS  ++I    +  ++ N   VG  RGS   S  A    I++++PL    
Sbjct: 863  RELSSIIKHGFSVLYMIAQKLVYESESNGYLVG-SRGSVGSSFVATMAGISEVNPLPPHY 921

Query: 400  --------------------------------------FSLLFERFLNPDRMSMPDFDID 421
                                                    + FE FL  D    PD D++
Sbjct: 922  ACPNCKHSEFITDGSVGSGFDLPPKDCPHCGTFMNRDGHDIPFETFLGFDGDKAPDIDLN 981

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  + +    RY +  +G + V +  T  ++  K A     + L+     V +       
Sbjct: 982  FSGEYQSSAHRYTEELFGKDHVFKAGTISTVAEKTAYGYALKYLEEREKTVHK------- 1034

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPL 539
                                          L +++  EG+ R    H  G+V+   D  +
Sbjct: 1035 ---------------------------AEELRLARGCEGIKRTTGQHPGGMVVVPSDYEV 1067

Query: 540  SQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
                P+     D  SD+  T F+   +    ++K D LG    TL +   D    + +  
Sbjct: 1068 YDFTPVQHPADDANSDIITTHFDFHSLHDT-ILKLDELGHDVPTLYKHLEDLTGTKVL-- 1124

Query: 597  DLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIED 642
                IP  D +   L               +  GTL + ++ +  +RQ L   QP C  D
Sbjct: 1125 ---DIPTSDEKVISLFTSTEALGVTPEQIYSKTGTLSLPEMGTPFVRQMLLDSQPKCFSD 1181

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI---A 699
            ++ +  L       ++ + N +            LI         VI  ++ +M      
Sbjct: 1182 LLQISGLSHGT---DVWLNNAQ-----------DLIKNGTCTISEVIGTRDNIMTYLLHK 1227

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
             L    +    ++ R+    K+        E  I    ++G+ +    +  ++      Y
Sbjct: 1228 GLEPKMAFKIMEITRKGKAPKL------LTEEHIQAMKEHGVPQWYVDSCMKI-----KY 1276

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIKKF- 805
             F K+HAAAY + + +  W K + P+E+ AA  T+   + +             K+++  
Sbjct: 1277 MFPKAHAAAYVIAAIRLGWYKVYRPLEYYAAFFTVRGGDFDVETTMRGQGSVAMKLEELK 1336

Query: 806  -------------------CQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGV 845
                                 +     ++ +P     +  V + + D +I     ++KG+
Sbjct: 1337 AKGNDRSQKESDTFDTLLIINEMLCRGLEFLPVDLYKSHAVKYTIEDGKIRLPFNSLKGL 1396

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            G   AR++ EA     + S+++  +R     +++ V+E+L  AG  
Sbjct: 1397 GEAAARNLQEAGEQGEYISVDEVSTR---SGVSKSVIETLEEAGVF 1439



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           V L +H++ S ++       ++         AIAITD   + +  +    
Sbjct: 344 VELHLHTNMSAMDALTPAGKLIKTAYNWGHKAIAITDHGVVQAFPDAMNA 393


>gi|197261474|ref|YP_002154289.1| putative DNA polymerase III, alpha subunit [Pseudomonas phage LMA2]
 gi|197244564|emb|CAR31298.1| putative DNA polymerase III, alpha subunit [Pseudomonas phage LMA2]
          Length = 1036

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 208/863 (24%), Positives = 357/863 (41%), Gaps = 98/863 (11%)

Query: 10  SFVHLQVHSSYSLLEGAL--SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SF  L+V S YS   GA       I+++    + P +AI D    +  + + Q A  A +
Sbjct: 3   SFPQLRVRSGYS--YGAAYGRFPEIIERAKEIESPFVAIVDDGT-WGHVRWEQAAAKAEL 59

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
               G ++ I   D+ +   + K          +L       ++   L S+         
Sbjct: 60  PRGFGMEIPIKCADDGEKELKLKA--------WVLAKDT---KKFYRLTSKSVQNQG--- 105

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              +     QE   +G+I   G +   +D A                           + 
Sbjct: 106 ---LTPQEFQEA--DGVIKFAGEAYAHLDLAGI---------------DYIDINPASMVA 145

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVAT--NNSLFLSEED-YEAHDVLMAVAHSTVVSQKD 244
            H   +          A     P+V T  N+   +   D   A  V  +V    + ++++
Sbjct: 146 AHGAMET---------ARAFGKPVVITSYNDMPSIDHADFASAWKVRESVGLRHIATEEE 196

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               +   ++  R E          A  NT  +  R + +    AP++            
Sbjct: 197 LW--SRLRHIMTREE-------FDTAAANTRAVVERLADVKLAKAPMI------------ 235

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              + ++   A  G   RL++G I      Q+Y  R   E+  I    F  YFL+VAD +
Sbjct: 236 -NLDGDIVALAREGQAYRLSRGHIK--EWTQEYEDRFQEEIKQIQLKDFDSYFLVVADLV 292

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +AKK+ + VGP RGS AGS+  Y L IT++DPL   LLF+RF++  R  +PD DIDF  
Sbjct: 293 AFAKKH-MLVGPARGSSAGSLVCYLLGITEVDPLPHRLLFQRFIDISRSDLPDIDIDFAD 351

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DP 483
             R  V  Y+Q KYG   V ++    +L+A + +  VG+   +P+   D +   I     
Sbjct: 352 THRYLVFEYLQQKYGTWNVVKLGNINTLKAASVIAHVGKRFGIPFHDTDNIKNSIIEYTS 411

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG----LYRHASTHAAGIVIGDRPL 539
           A     + + D     E            EI+    G       H+  HAAGI++ +  +
Sbjct: 412 ADERYGKGLEDT---FEKTQPGRDFREKYEIASACMGDLEIHPSHSGVHAAGILVCNDEV 468

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
                +  +      V Q +    E   L+K D LGL+TL ++Q +           +L 
Sbjct: 469 IDFCTVTSEG-----VAQLDKPDSEYLNLLKIDALGLRTLGVIQDA-----NCVTAQELY 518

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            +P +D     +L      GIFQ E   +R     +     E+I  + +L RPGP+ + +
Sbjct: 519 DLPLNDKAVLDILNEDKMSGIFQFEGQAVRSVANAINITAFENIDHITALARPGPLSSGM 578

Query: 660 --VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
              Y  R  G+E +    P ++  L  T GV +YQEQ+M I + +  +   +   +R+AM
Sbjct: 579 ATKYIERVAGREPVTYTIPQVEQYLSGTYGVFLYQEQIMSIVKDIGQFDWEQTSAIRKAM 638

Query: 718 GKKIKEE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             +  EE  +K++E FI GA   G++   A  +++ +  F  +GFN+SH+ +YAV++Y T
Sbjct: 639 SARKGEEFFNKRRELFIEGAKTIGVAPDDAHRVWQEMVTFGAWGFNRSHSVSYAVVTYWT 698

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            +MK ++ +E+ AA +    D+ + +    + A++  ++          +++ V D R+ 
Sbjct: 699 CYMKRYHRLEYAAACLRAAKDDQQTVSILRELAKE-GVEYTALDPEHSELNWVVADGRLI 757

Query: 837 YSLAAIKGVGTTTARHIMEASAD 859
             +   KG G   A   +    D
Sbjct: 758 GGIMNAKGFGPAKAERFLRLRED 780


>gi|168484148|ref|ZP_02709100.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC1873-00]
 gi|172042563|gb|EDT50609.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC1873-00]
          Length = 1463

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 313/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVSRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPHKDCPSCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNEIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERND 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYCSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|306820890|ref|ZP_07454510.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
            43715]
 gi|304551004|gb|EFM38975.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
            43715]
          Length = 1398

 Score =  399 bits (1026), Expect = e-108,   Method: Composition-based stats.
 Identities = 169/913 (18%), Positives = 317/913 (34%), Gaps = 179/913 (19%)

Query: 84   KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG 143
            +      T      + V+L     G + L +LVS  +       +  I  S ++    E 
Sbjct: 557  EKIKSIDTSKIRPVNAVILAKNQAGVKDLYKLVSLAHTKYLYSGTPTIPKSEIKN-HREN 615

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL------YVNLQRHRGYDRYRE 197
            L++ +G     +  A   N      + ++ F               +N +  R  +  + 
Sbjct: 616  LLVGSGFYESDVFSAILKNKPVKEIESIIDFYDYIEINPVTTMNSMINDESVRNVEEIKN 675

Query: 198  --SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
                + Q+A      ++A++NS +L E++     +L          +K       D YL+
Sbjct: 676  INKTIYQIATKMGKTVIASSNSHYLDEDEKLFRKIL------KSSIKKRDESPDNDLYLR 729

Query: 256  NRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               EM+  FS L E       +ENT  IA     ++ V     P  IE          + 
Sbjct: 730  TTDEMLQEFSYLGEDVARKIVVENTNAIANTIEKVIPVPDGTFPPVIEGS--------DE 781

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ELRN      +   +          +   +RL+ ELN I    ++  ++I    +  +  
Sbjct: 782  ELRNMCYEKAKRIYSDNL------PEIVEKRLEKELNSIINNGYAVMYIIAQKLVTKSLS 835

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------ 399
            +   VG  RGS   S+ AY   IT+++ L                               
Sbjct: 836  DGYLVG-SRGSVGSSLAAYMSDITEVNALPPHYICPKCKSSEFILDGSYPTGADMPDKDC 894

Query: 400  -----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
                       F + FE FL  +    PD D++F  + +    +Y Q  +G + V +  T
Sbjct: 895  PVCGERYHKDGFDIPFETFLGFEGDKEPDIDLNFAGEYQPNAHKYTQKLFGEDYVYRAGT 954

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
             G++  K A   + +                                   +  + +   +
Sbjct: 955  IGTVAEKTAYGFIKKY-------------------------------EELKSEKFSSAQI 983

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWI 563
            + L    +K  G+ R    H  G+++      +    P+     D +S    T F+   I
Sbjct: 984  EVLQ---KKCTGIKRTTGQHPGGVMVVPDYKDIYDFSPIQYPANDKKSGTLTTHFDYHSI 1040

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
                ++K D LG    +++++  +F        D + IP DD  T  L     +LG    
Sbjct: 1041 -SGRILKLDILGHDGPSIIRQLEEFTG-----TDATKIPLDDKLTMGLFANTDSLGCKLD 1094

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE-KIVSIHPLIDPML 682
            E         G+     + +  ++   +P  +  +V  +   +G    + +   L+   +
Sbjct: 1095 EID-CLTGTLGIPEFGTKFVRQMLIDTKPSTLGELVRISGLSHGTNVWVNNAQDLVRGNV 1153

Query: 683  KETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
               + VI  ++ +M    L       S    + +R+   K + EE             +N
Sbjct: 1154 ASLKEVICTRDDIMNYLILKGLNPKTSFKIMENVRKG--KGLTEE------------YEN 1199

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
             + +      +    K  +Y F K+HAAAY ++S++ A+ K HYP  F A   T ++ + 
Sbjct: 1200 DMKENKVPQWYIDSCKKIEYMFPKAHAAAYVMLSFRIAYYKIHYPEAFYATYFTTKVFDF 1259

Query: 800  E-------------KIKKF--------------------CQDARQFNIQIMPPS-VNTPC 825
            +             KI++                       +  + NI++      N+  
Sbjct: 1260 DVNIISKGQDAILEKIREINSLGNDASVKEKGLLTVLEVAFEMSKRNIKLEKVDLYNSDA 1319

Query: 826  VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              FK+  +N I     AI G+G   A  I + + +  F S+ED   R      ++ V+E 
Sbjct: 1320 KKFKLSENNTIIPPFLAIPGLGDVVAEKIYQEAKESEFISVEDLKERT---GASKTVIEE 1376

Query: 885  LVFAGALDCFGYS 897
            L  +G +D    +
Sbjct: 1377 LTNSGCIDNLSNT 1389



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 2/107 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH++ S ++G  S+  ++ +I + +  A+AITD   + +  +  + A   GI+PI 
Sbjct: 297 VELHVHTNMSQMDGLTSVKELMSRIKSYEHSAVAITDHAVVQAFPDVMEVAEKQGIKPIY 356

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
           GC+  + ++D  +     KT       IV  + T  G+    + ++ 
Sbjct: 357 GCEFYV-VEDTQEHIKVRKTAKFDGKYIVFDLET-TGFSNRNDAITE 401


>gi|22538049|ref|NP_688900.1| DNA polymerase III PolC [Streptococcus agalactiae 2603V/R]
 gi|25011937|ref|NP_736332.1| DNA polymerase III PolC [Streptococcus agalactiae NEM316]
 gi|76798733|ref|ZP_00780952.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae 18RS21]
 gi|54036993|sp|P63984|DPO3_STRA5 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|54040954|sp|P63983|DPO3_STRA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|22534952|gb|AAN00773.1|AE014277_21 DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae 2603V/R]
 gi|24413479|emb|CAD47557.1| DNA polymerase III (alpha subunit) [Streptococcus agalactiae NEM316]
 gi|76585912|gb|EAO62451.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae 18RS21]
          Length = 1468

 Score =  399 bits (1026), Expect = e-108,   Method: Composition-based stats.
 Identities = 159/922 (17%), Positives = 314/922 (34%), Gaps = 175/922 (18%)

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
            M+ N K+  +       +    + V    G + + +LVS   +    +   RI  S L +
Sbjct: 603  MELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVSLSNVK-YFEGVARIPRSVL-D 660

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYD--- 193
               EGL++ T  S G +  A   N    A      +   ++    +Y  L          
Sbjct: 661  AHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYDFIEVMPPAIYRPLVVRDLIKDEV 720

Query: 194  --RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKD 244
              +     ++++    + P++AT N  ++  ED    +++         +  +    +  
Sbjct: 721  GIQQIIRDLIEVGRRLDKPVLATGNVHYIEPEDEIYREIIVRSLGQGAMINRTIGRGEDA 780

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            +P   P  + +  +EM+  F+ L + L   + +    +F  +                  
Sbjct: 781  QPAPLPKAHFRTTNEMLDEFAFLGKDLAYEIVVTNTNTFADRFED--------------V 826

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFL 358
            +  + +L    V   E R+A+   AK +             R++ EL  I    F+  +L
Sbjct: 827  EVVKGDLYTPFVDRAEERVAELTYAKAFEIYGNPLPDIIDLRIEKELASILGNGFAVIYL 886

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------ 400
                 +Q + +    VG  RGS   S  A  + IT+++P+                    
Sbjct: 887  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSC 945

Query: 401  -----------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  D +      V++ 
Sbjct: 946  GSGYDLPNKNCPKCGTLYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDI 1005

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++  K A   V +  +  Y++                          
Sbjct: 1006 FGEEYAFRAGTVGTVAEKTAFGFV-KGYERDYNK-------------------------- 1038

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---D 552
                   D  V+RL   +    G+ R    H  GIV+      +    P+          
Sbjct: 1039 ----FYNDAEVERL---ATGAAGVKRSTGQHPGGIVVIPNYMDVYDFTPVQYPADDMTAA 1091

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K  D        +D S I  DD +   L 
Sbjct: 1092 WQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDL-----SGIDPSNILPDDPDVMKLF 1145

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +    LG+ + E  G    + G+       +  +V+   P     ++  +   +G +  +
Sbjct: 1146 SGTEVLGVTE-EQIGTPTGMLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHGTDVWL 1204

Query: 673  -SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQ 728
             +   LI   +     VI  ++ +M            + +  + +R+ +  KI E    +
Sbjct: 1205 GNAQDLIKEGIATLSTVIGCRDDIMVYLMHAGLQPKMAFTIMERVRKGLWLKISE---DE 1261

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  +I     N +      +  ++      Y F K+HAAAY +++ + A+ K HYP+ + 
Sbjct: 1262 RNGYIQAMRDNNVPDWYIESCGKI-----KYMFPKAHAAAYVLMALRVAYFKVHYPIFYY 1316

Query: 789  AASMTLE--------------------MDNVEKIK---------------KFCQDARQFN 813
             A  ++                      D  EK +               +   +  +  
Sbjct: 1317 CAYFSIRAKAFELRTMSAGLDAVKARMKDITEKRQRNEATNVENDLFTTLELVNEMLERG 1376

Query: 814  IQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             +        +   DF + ++ +     A++G+G   A+ I+ A  D  F S  +   R 
Sbjct: 1377 FKFGKLDLYRSHATDFIIEEDTLIPPFVAMEGLGENVAKQIVRAREDGEFLSKTELRKR- 1435

Query: 873  DSKKLNRRVLESLVFAGALDCF 894
                ++  ++E     G L   
Sbjct: 1436 --GGVSSTLVEKFDEMGILGNL 1455



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +      V    H++ S ++   ++ +++D  A    PAIAITD  N+ S      +A  
Sbjct: 337 MPADQKRVEFHAHTNMSTMDALPTVESLIDTAAKWGHPAIAITDHANVQSFPHGYHRAKK 396

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 397 AGIKAIF 403


>gi|306832698|ref|ZP_07465835.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338]
 gi|304425154|gb|EFM28283.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338]
          Length = 1464

 Score =  399 bits (1026), Expect = e-108,   Method: Composition-based stats.
 Identities = 164/940 (17%), Positives = 321/940 (34%), Gaps = 182/940 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A              +D+  N K+  +       V    + V    G + + +LVS
Sbjct: 585  FLKEAREN-----HSLANMMDL--NTKLVAEDSYKKARVKHATIYVQNQTGLKNIFKLVS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-- 175
               +    +   RI  + L +   EGL++ T  S G +  A   +    A K    +   
Sbjct: 638  LSNVK-YFEGVARIPRTVL-DAHREGLLLGTACSEGEVFDAVLSSGVDAAVKVAKYYDFI 695

Query: 176  KLFGDRLYVNLQRHRGYD-----RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    LY  L            R     ++++      P++AT N  ++  ED    ++
Sbjct: 696  EVMPPVLYAPLLAQGTIKDEEGIRQVIRDLLEVGRRLNKPVLATGNVHYIEPEDEIYREI 755

Query: 231  LMA-------VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE------NTVEI 277
            ++        +       +  +P   P  + +  +EM+  F+ L E +       NT + 
Sbjct: 756  IVRSLGQGAPINRPIGRGENAQPAPLPKAHFRTTNEMLDEFAFLGEDVAYQIVVKNTNDF 815

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
            A R   +  V   +   F+EK  + +   E    R   + G                   
Sbjct: 816  ADRFEEVEVVKKDLYTPFLEKSEERVA--EMTYQRAFEIYG------------NPLPDII 861

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
              R++ EL  I    F+  +L     +  +      VG  RGS   S  A  + IT+++P
Sbjct: 862  DLRIEKELTSILGNGFAVIYLASQMLVIRSNDRGYLVG-SRGSVGSSFVATMIGITEVNP 920

Query: 398  LR-----------------------------------------FSLLFERFLNPDRMSMP 416
            +                                            + FE FL  D   +P
Sbjct: 921  MPPHYVCPNCQHSEFITDGSVGSGYDLPDKDCPECGTRYKKDGHDIPFETFLGFDGDKVP 980

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D++F  D +      V++ +G +   +  T G++  + A   V +  +  Y       
Sbjct: 981  DIDLNFSGDDQPSAHLDVRDIFGEQYAFRAGTVGTVADRTAYGFV-KGYERDYG------ 1033

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            K  P                        +  V+RL   +Q   G+ R    H  GIV+  
Sbjct: 1034 KFYP------------------------EAEVERL---AQGAAGVKRTTGQHPGGIVVIP 1066

Query: 537  R--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
                +    P+         +   T FN   I++  ++K D LG    T+++K  D    
Sbjct: 1067 NYMDVYDFTPVQYPADDLSAEWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG- 1124

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +D   IP DD +   L +    LG+   E  G    + G+       +  +V    
Sbjct: 1125 ----IDPKDIPADDPDVMALFSGTEVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVEETH 1179

Query: 652  PGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSL 707
            P     ++  +   +G +  + +   LI   +   + VI  ++ +M     A L    + 
Sbjct: 1180 PTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAF 1239

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            +  + +R+ M  KI +E   ++  +I    +N +      +  ++      Y F K+HAA
Sbjct: 1240 TIMERVRKGMWLKISDE---ERNGYIEAMRENNVPDWYIESCGKI-----KYMFPKAHAA 1291

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-KIK----------------------- 803
            AY +++ + A+ K HYP+ +  A  ++     + K                         
Sbjct: 1292 AYVLMALRVAYFKVHYPIYYYCAYFSIRAKAFDIKTMSAGLDAVKERMADISNKRKNNEA 1351

Query: 804  -----------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTAR 851
                       +   +  +   +     +     ++F +  + +     A+ G+G   A+
Sbjct: 1352 SNVEIDLYTTLEIVNEMLERGYKFGQLDLYRSDAIEFIIDGDTLIPPFVAMDGLGENVAK 1411

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             I++A  +  F S  +   R     ++  ++E +   G L
Sbjct: 1412 QIVKARTEGEFLSKMELRKR---GGVSATLVEKMDEMGIL 1448



 Score = 78.9 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 87/274 (31%), Gaps = 19/274 (6%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++  ++D  A     A+AITD  N+ S      +A  
Sbjct: 333 MPEGQKRVEFHAHTNMSTMDALPTVEELIDTAAKWGHKAVAITDHGNVQSFPHGYHRARK 392

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            GI+ I G + +I         N           +V  V T      L  + + +  +  
Sbjct: 393 NGIKAIFGLEANIVEDKVPIAYNPQDIELNEATYVVFDVETT----GLSAVNNDLIQIAA 448

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      +    E    G  L   T   +G  D           E+ L  F+    D +
Sbjct: 449 SKMYKGNIVEQFDEFINPGHHLSAFTTELTGITDNHVRNAKP--IEEVLQMFQNFCQDTV 506

Query: 183 YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
              L  H     +    +      H +P++ T   +   E     +       H      
Sbjct: 507 ---LVAHNAT--FDVGFMNANYERHGMPII-TQPVIDTLEFARNLYP--EYKRHGLGPLT 558

Query: 243 KDRPRVTPDHYLKNRSEMVS---IFSDLPEALEN 273
           K        H++ N     +   +F  L EA EN
Sbjct: 559 KRFQVSLEHHHMANYDAEATGRLLFIFLKEAREN 592


>gi|325661459|ref|ZP_08150085.1| hypothetical protein HMPREF0490_00819 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472408|gb|EGC75620.1| hypothetical protein HMPREF0490_00819 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 1106

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 216/997 (21%), Positives = 402/997 (40%), Gaps = 131/997 (13%)

Query: 5   LEKSPSFVHLQVHSSYSL----LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           +EK  ++V   +HS  S     ++     N  +D   +    A+A ++  ++   +    
Sbjct: 1   MEK--NYVVYHLHSDLSNGVTNIDSVTKYNEYIDYAKSLGMKAMAFSEHGSVLEWVHKKN 58

Query: 61  KACAAGIQPIIGCQLD--------------------IDMQDNLKMTNQ----GKTPFPTV 96
               AG++ I   +                       D ++  K   +     K      
Sbjct: 59  AIEKAGMKYIHAEEFYVTKELYQYPDDTELCESLLGTDPEEAQKEIEEFLEGNKFQVRDN 118

Query: 97  PSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
              VL+    EG + +  L S+ ++ D       RI    L       LI  T    G  
Sbjct: 119 YHCVLIAKNYEGVKEINALSSKAFVRDGHFYYQPRITFEELINTSDNILI-TTACIGG-- 175

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVAT 214
                 + +   ++  L F     DR Y+ +Q H    + + +Q + +++  + +PL+A 
Sbjct: 176 ---ILASGTPDIQEDFLNFLIKNKDRCYLEIQHHCDDMQIKYNQYLAKISTQYGIPLIAG 232

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD-------- 266
            ++  L++E      ++         S+        D   K+  E+V  +          
Sbjct: 233 TDTHALNDEHMRGRAIMQRSKDVQFDSE-----SAWDMTFKSYDELVVAYEKQFAIAKDV 287

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
             +A+E T  IA R       ++   P+  +            E++ K   G++ R    
Sbjct: 288 YLKAIEETNRIADRVEEFKLDYSYKYPKLYDDSL--------TEIKKKIATGIKWR---- 335

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
            I K  + ++Y+ R+ +EL          + L+  D+    +KN +  G  RGS +GS+ 
Sbjct: 336 GIDKKKNYKEYQDRVVYELKTYIHNNALDFMLLEEDYKTELRKNGVKYGYSRGSVSGSLI 395

Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
           AY L IT++DP+RF+L FERF+N +R+S+ D D D+ ++ R +V +Y+ N+        I
Sbjct: 396 AYLLGITEVDPIRFNLNFERFMNEERVSLADIDSDWFKEDRWKVRQYLFNR-EKLHCCNI 454

Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
           ITF +++ K A++DVGRAL M   +   L  L+  D       + + +  R +       
Sbjct: 455 ITFNTVKMKGAIKDVGRALGMTPQETQLLSNLVQEDENKH---EFVDEKYRLQ------- 504

Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
               L E    + G       HAAG+V+   P+  +         + P++Q NMK I+  
Sbjct: 505 -YSELFEYVDIVVGTITSLGRHAAGLVVAPYPVDDVFGTLYISSDEKPISQINMKEIDSL 563

Query: 567 GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
             +K D LGL  + L+ K+ + +      +    + F+D E +  +    T  IFQ ES 
Sbjct: 564 NFVKLDVLGLDCVGLIYKTCEAVG--IPFLTPDNLDFNDEEVWEDIAK-DTTLIFQFESD 620

Query: 627 GMRQALEG-MQPDCIE------------DIIAL-VSLYRPGPIDN---IVVYNNRKNGKE 669
                L   ++P  I+            D++++     RP        +     R NG +
Sbjct: 621 FAGSYLRDILRPQVIKKIKEKNPNLSYIDLMSMANGAIRPAGESYRTKLAAGIYRDNGND 680

Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD--- 726
                   ++  L  T G ++YQEQ+++      G+++ EAD++RR   KK   E D   
Sbjct: 681 A-------LNKFLAPTLGFLVYQEQIIEFLHRFCGFTMGEADIVRRHFSKKTGTETDIPI 733

Query: 727 ------------KQKERFISGASK-----NGISKTIAVNIFEL----LAKFADYGFNKSH 765
                       K+ E +I G  K      G+ +  A  I E     +   ++Y F+K+H
Sbjct: 734 IKDGGYMNNIDGKKSEHYIKGFIKTMKDDYGVDQVDAEQIIESFLQVIIDASNYLFSKNH 793

Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
           A  Y+ + +   +++ +YP+E L  ++ +   + EK  K          +I P       
Sbjct: 794 ADPYSFLGFACGYLRHYYPLETLTTALNIYASDDEKSLKIKDYIISKGYEIFPIQFRKSK 853

Query: 826 VD--FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK-KLNRRVL 882
            +  F    N IY  +++IK      A  + E   +  +++  +    ++ K  +N + L
Sbjct: 854 AEYQFDKNSNSIYQGISSIKYCNEKIADELFELGKNS-YENFFELLFDINEKTSINSKQL 912

Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             L        FG ++  LL+ ++   K+A   + N+
Sbjct: 913 MILTGLNFFKEFGENKY-LLKLIEYFDKFAFKKQINK 948


>gi|329117787|ref|ZP_08246504.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            parauberis NCFD 2020]
 gi|326908192|gb|EGE55106.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            parauberis NCFD 2020]
          Length = 1465

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 164/916 (17%), Positives = 320/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+  +       V    + V    G + + +LVS   ++   +   RI  + L +   
Sbjct: 603  NTKLVAEDSYKKARVKHATIYVQNQVGLKNMFKLVSLSNVV-YFEGVPRIPRTILDQY-R 660

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYV-----NLQRHRGYDR 194
            EGL++ +  S G +           A +  +   F ++    +Y       L + +    
Sbjct: 661  EGLLLGSACSEGEVFDTVLNKGVDAAVEVGKYYDFIEIMPPAIYQPLIARELIKDQEGIH 720

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM------AVAHSTV-VSQKDRPR 247
                 ++++      P++ T N  ++  ED    ++++      A+ + T+   +  +P 
Sbjct: 721  QIIRDLIEVGARLNKPVLVTGNVHYIEPEDEIYREIIVRSLGQGAIINRTIGRGEGAQPA 780

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALE------NTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+   + L E L       NT + A R   +  V   +   FIEK  +
Sbjct: 781  PLPQAHFRTTNEMLDEMAFLGEDLAYQVVVQNTQDFADRIEEVEVVKGDLYTPFIEKAEE 840

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 841  TVAELT----YQKAFE----------IYGNPLPDIIDLRIEKELTSILGNGFAVIYLASQ 886

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +  + +    VG  RGS   S  A  + IT+++P+                       
Sbjct: 887  MLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPKCQRSEFITDGSVGSG 945

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  D +      V++ +G 
Sbjct: 946  YDLPDKDCPDCGTKYQKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGA 1005

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++  K A   V +  +  + +  R                          
Sbjct: 1006 EYAFRAGTVGTVADKTAYGFV-KGYERDFGKFYR-------------------------- 1038

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPV 555
                D  VDRL   ++   G+ R    H  GIV+      +    P+     DV +    
Sbjct: 1039 ----DAEVDRL---AKGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQFPAEDVSASWQT 1091

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D   I  DD     L +  
Sbjct: 1092 THFNFHDIDE-NVLKLDILGHDDPTMIKKLEDL-----SGIDAKTIQADDPGVMALFSGT 1145

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V+  RP     ++  +   +G +  + + 
Sbjct: 1146 EILGVTP-EQIGTPTGMLGIPEFGTSFVRGMVNETRPTTFAELLQLSGLSHGTDVWLGNA 1204

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   +   + VI  ++ +M     A L    + +  + +R+ M  KI EE   ++  
Sbjct: 1205 QDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGMWLKISEE---ERNS 1261

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I    KN +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1262 YIQAMRKNNVPDWYIESCGKI-----KYMFPKAHAAAYVLMALRVAYFKVHHPLMYYCAY 1316

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     E K                                    +   +  +   + 
Sbjct: 1317 FSIRAKAFELKTMSGGLKAVKARMEDIQIKRKNNEVTNVENDLFTTLEIVNEMLERGYKF 1376

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +     ++F++  + +     A++G+G   A+ I+ A  +  F S  +   R    
Sbjct: 1377 GKLDLYRSEAIEFQIDGDTLIPPFVAMEGLGENVAKQIVRARQEGEFLSKMELRKR---G 1433

Query: 876  KLNRRVLESLVFAGAL 891
              +  ++E +   G L
Sbjct: 1434 GASSTLVEKMDDMGIL 1449



 Score = 78.1 bits (191), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +      V    H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  
Sbjct: 334 MPADKKRVEFHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHGNVQSFPHGYHRARK 393

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 394 AGIKAIF 400


>gi|148988015|ref|ZP_01819478.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP6-BS73]
 gi|147926479|gb|EDK77552.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP6-BS73]
          Length = 1463

 Score =  398 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 159/916 (17%), Positives = 313/916 (34%), Gaps = 175/916 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVSRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGRPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPV 555
                D  V+RL   +Q   G+ R    H  GIV+      +    P+         +   
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQT 1089

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L +  
Sbjct: 1090 THFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDL-----SGIDPNKIPMDDEGVMALFSGT 1143

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
              LG+   E  G    + G+       +  +V    P     ++  +   +G +  + + 
Sbjct: 1144 DVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNA 1202

Query: 675  HPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              LI   + +   VI  ++ +M     A L    + +  + +R+ +  KI EE   ++  
Sbjct: 1203 QDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNG 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I     N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A 
Sbjct: 1260 YIEAMKANKVPEWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAY 1314

Query: 792  MTLEMDNVE-KIK----------------------------------KFCQDARQFNIQI 816
             ++     + K                                    +   +  +   + 
Sbjct: 1315 FSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKF 1374

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R    
Sbjct: 1375 GKLDLYCSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---G 1431

Query: 876  KLNRRVLESLVFAGAL 891
             L+  ++E +   G L
Sbjct: 1432 GLSSTLVEKMDEMGIL 1447



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|51892650|ref|YP_075341.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
            14863]
 gi|51856339|dbj|BAD40497.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
            14863]
          Length = 1475

 Score =  398 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 171/980 (17%), Positives = 329/980 (33%), Gaps = 213/980 (21%)

Query: 32   ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI---QPIIGCQLDIDMQDNLKMTNQ 88
            +       Q P   + D +           A  A +   + +   +    + D  ++T  
Sbjct: 582  LAALTKELQVP---LVDHH------RADADAKTAAMVLMKLLERAEGVETVADLNRLTKG 632

Query: 89   GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLT 148
                        +LV T  G + L +L+S  ++ +   ++ R+  S L E   EGL++ +
Sbjct: 633  INVEQLRPYHTTVLVKTQAGMKNLYKLISLSHI-EYFNRTPRVPRSEL-EKHREGLLVGS 690

Query: 149  GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD------RLYVNLQRHRGYDRYR--ESQV 200
                G +  A          +++ ++               +   +    ++      ++
Sbjct: 691  STYGGQLFDALIRGVPDEELEQMASWYDYLEILPRDCLAFLLESGQVNSEEQLLSLNRRI 750

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
             +L      P+ A +++ FL         +L             R       YL+   EM
Sbjct: 751  YELGKKLGKPVCAVSDAHFLDPHQQVFRRIL-------KHGIGFRDEYDRPFYLRTTQEM 803

Query: 261  VSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
            +  F+ L E  A E  VE     +  ++    +  +        + +    E R  +   
Sbjct: 804  LDEFAYLGEQAAYEVVVENPNAIAAQIEKVKVVPDKLHPP----VLEGSVEETRRLSWEK 859

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            ++         K  H      RL+ ELN I    F+  + I    ++ + +    VG  R
Sbjct: 860  VKRVYGDPVPEKIAH------RLEKELNAIIGNGFAVSYYISHLLVKKSMELGYLVG-SR 912

Query: 379  GSGAGSVTAYALTITDIDPLRF-------------------------------------- 400
            GS   S  A+A+ IT+++ L                                        
Sbjct: 913  GSVGSSFVAWAMDITEVNALPPHYICPQCKYLEWHDDGKTGSGFDLPRKDCPRCGTPLDR 972

Query: 401  ---SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER-VAQIITFGSLQAKA 456
                + FE FL      +PD D++F  + ++ + +Y +   G E+ V +  T G++  K 
Sbjct: 973  DGQDIPFETFLGFKGDKVPDIDLNFSGEVQNRIQKYSEELLGGEKYVFKAGTVGTIAEKT 1032

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A   V                            +A  ++SR    R A         ++Q
Sbjct: 1033 AFGMV----------------------------RAWLEESRITGVREAHIGY-----LAQ 1059

Query: 517  KLEGLYRHASTHAAGIVIGD--RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKF 571
             L G+ R    H  G+V+      + ++ P+     D  S +  T F+    E+A L+K 
Sbjct: 1060 GLAGVKRTTGQHPGGMVVCPVGMEIEEVTPVQYPADDRSSGVKTTHFDYHSFEQA-LMKL 1118

Query: 572  DFLGLKTLTLLQKSLDFLAQRGVKVDLS--LIPFDDHETYHLLTTK-------------- 615
            D LG    T+L+   D   ++    D     +P DD +   L +                
Sbjct: 1119 DILGHDDPTMLKMLQDLYREKKGDPDFDVRKVPVDDPQVLALFSPGGNRVLGIEDGKLQF 1178

Query: 616  --GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GT+ + ++ +  +RQ L    P    D++ +  L       ++   N ++  K+ I  
Sbjct: 1179 DLGTIVLPEMGTRFVRQMLMETSPRNFSDLVRISGLSHGT---DVWTNNAQELVKKGIPF 1235

Query: 674  IHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
                        Q VI  ++ +M       +    +    + +R+   K +  EM++   
Sbjct: 1236 ------------QDVIGCRDDIMVQLIYWGVEPATAFKIMESVRKG--KGLTPEMEE--- 1278

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                      +      + +    K   Y F K+HAAAY +   + AW K H P+ F AA
Sbjct: 1279 ---------TMRACNVPDWYIWSCKQIKYMFPKAHAAAYVLSCLRIAWFKVHEPLLFYAA 1329

Query: 791  SMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS--- 838
             +++   +V+          ++++ Q+         P        ++++ +         
Sbjct: 1330 YLSVRAGSVDANLLVAGPEAVRRYVQEIEAKGKDATPKE-KDSLTEYELVEEAFLRGIRF 1388

Query: 839  ------------------------LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                                      A+ G+G + A+ I+EA A  PF S ED  +R   
Sbjct: 1389 NRVDLYRSEATRYLIDGENTLLCPFNALPGLGDSAAQAIVEARAQGPFHSKEDLKNRARL 1448

Query: 875  KKLNRRVLESLVFAGALDCF 894
             K    +LE     G L+  
Sbjct: 1449 NKAVMELLEG---HGCLEGL 1465



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++  +    ++         A+AITD   + +    S        + I 
Sbjct: 367 VELHAHTTMSAMDALIDPAELVKTAVRWGHKAVAITDHGVVQAFPAASHVKVPDDFRVIY 426

Query: 72  GC 73
           GC
Sbjct: 427 GC 428


>gi|282882108|ref|ZP_06290749.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus
            lacrimalis 315-B]
 gi|281298138|gb|EFA90593.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus
            lacrimalis 315-B]
          Length = 1415

 Score =  398 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 178/940 (18%), Positives = 325/940 (34%), Gaps = 189/940 (20%)

Query: 51   NLFSALEFSQKACAAG---IQPIIGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVST 105
            +L  A      A A     I+ I        +  N    + +Q +       S+ +L   
Sbjct: 538  SLVGAHRAVNDAEATAHLFIKLINKIFDPKHIDFNKLNSLKSQIEPEILFESSLSILTKN 597

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS- 164
             EG + L +LVS  ++     +  ++  S + +   +GL++ +G  SG I  AFF N   
Sbjct: 598  EEGLKNLYKLVSDSHMK-YFNRVAKVPRSLINKY-RKGLLIGSGDESGEIFNAFFRNLEI 655

Query: 165  QVAEKRLLTFKKL---FGDRLYVNLQRHRGYDR---YRESQVVQLAYTHELPLVATNNSL 218
               EK    +  L     D    +L R++           ++ ++     +P++AT+N  
Sbjct: 656  DEVEKIASFYDYLEIQPIDNFIPSLLRNKLTREDIIEINKKICKVGENLGIPVIATSNCF 715

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVE 276
            +L E+D     +++   +  V +     ++    Y ++   M+  F  L   +A+E  V 
Sbjct: 716  YLDEKDDLVRRIIL---NGKVGAPDYNAKIKQKLYFRSTDLMLEEFLYLGTDKAMEVVVT 772

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
                 +  +    PI         +  ++  +N    KA            I      Q 
Sbjct: 773  NTNLINDSIDNVKPIPDGKYPPVIEGSEETLKNITYKKAHE----------IYGDPLPQI 822

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               RL  EL+ I    ++  ++I    ++ +  +   VG  RGS   S  A+   IT+++
Sbjct: 823  VEARLKKELDSIISNGYAVLYIIAQKLVKKSNDDGYLVG-SRGSVGSSFAAHMADITEVN 881

Query: 397  PLR-----------------------------------------FSLLFERFLNPDRMSM 415
            PL                                           ++ FE FL       
Sbjct: 882  PLPAHYICPQCKYSEFMEDPTIGSGVDLADKNCPKCGHKLNKNGHNIPFEVFLGFYGDKE 941

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  + +    +Y +  +G   V +  T G +  K A   V +  +         
Sbjct: 942  PDIDLNFAGEYQPNAHKYTEELFGKGYVFRAGTIGKVAYKTAYGYVKKFFE--------- 992

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                    +  ++   VDRL   +    G+ R +  H  G++I 
Sbjct: 993  -----------------------NQEDISQTEVDRLTIEA---TGVKRTSGQHPGGVMIC 1026

Query: 536  DR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
             +   +    P+     D  S +  T F+  +I    ++K D LG    T+++   DF+ 
Sbjct: 1027 PKSKDIFDFTPIQYPADDKSSGVITTHFDYNFIH-GKILKLDILGHDGPTIIKMLEDFIG 1085

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQ 636
                 +D S IP DD +T  L ++               GTLGI +  +  +RQ L   +
Sbjct: 1086 -----IDTSKIPLDDKDTLSLFSSGEKLNLDKNIFDVSTGTLGIPEFGTGFVRQMLIDTK 1140

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            P    +++ +  L     +                 +   L+         VI  +E +M
Sbjct: 1141 PKNFAELVRISGLSHGTDVWLG--------------NAADLVSSGQASLSEVICTREDIM 1186

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
                     +    D     M K  K +   +++  I    K           +      
Sbjct: 1187 LYLIAAGAENKMAFDT----MEKVRKGKGLTEEQIKIMNNLK-------LPPWYIDSCLK 1235

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQ 807
              Y F K+HA AY ++S++ A+ K +YP+ F A   T+++ +          E IK    
Sbjct: 1236 IKYMFPKAHAVAYVMLSFRIAYCKLNYPLAFYATYFTIKLSDFVGEVIINGPEAIKAQID 1295

Query: 808  -----------------------DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIK 843
                                   +     ++ +P  +      +F + D +I   L A+ 
Sbjct: 1296 FINNKETPSSKEQTQMPIYEVALEMYSRGLEFLPVDIYKSKAQEFTIEDKKIRMPLRALT 1355

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            GVG   A++I+EA  D  F S ED   R    K    + E
Sbjct: 1356 GVGEQAAKNIIEARNDGQFLSKEDLLKRAKVGKSLLNIFE 1395



 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L+VH+  S + G  S ++   +  +    AIAITD +++    E    +    I+ I 
Sbjct: 316 VELRVHTKMSQMNGVTSFSDFAKRAKSFGHKAIAITDVSDVQGFPEAMDASKDFDIKVIY 375


>gi|167770615|ref|ZP_02442668.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM
            17241]
 gi|167667210|gb|EDS11340.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM
            17241]
          Length = 1445

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 178/959 (18%), Positives = 325/959 (33%), Gaps = 205/959 (21%)

Query: 54   SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT---------PFPTVPSIVLLVS 104
                  +    A +   I  ++   MQ     ++ G+                  ++LV 
Sbjct: 565  GEFNHHRACDDAEMLARIYIRMMELMQSERACSDIGQINTSLAAVDVKKSPTYHQIILVK 624

Query: 105  TAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS 164
               G + L  L+S  +L D   +  RI  S L E   EGL++ +   +G + RA     S
Sbjct: 625  NLTGLKNLYRLISISHL-DYYAKRPRIPKSKLIE-HREGLLIGSACEAGQLYRAIVEGKS 682

Query: 165  QVAEKRLLTFKKLFG-----DRLYV---NLQRHRGYDRYRESQVVQLAYTHELPLVATNN 216
                  +  F          +  Y+   N+       R     VV+L     +P+VAT +
Sbjct: 683  WGDLCDIARFYDYLEIQPVANNEYMVRSNMVADEQAIREFNETVVRLGERLNIPVVATCD 742

Query: 217  SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENT 274
              F+   D +   +LMA       +  D+       Y +   EM+  F  L   +A E  
Sbjct: 743  VHFMDPGDAKFRAILMA---GMGFADADQ---QAPLYFRTTDEMLKEFEYLGAQKAHEVV 796

Query: 275  VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
            +E     + +++   PI             ++ +   R KA+             +G   
Sbjct: 797  IENPNLIADMVENIKPIPDGTFTPTIPGSDEDLQRITRAKAMELYGY--------QGQVP 848

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
            +   +RL+ EL  I +  F+  ++I    +  +++    VG  RGS   S  A    I++
Sbjct: 849  ELVSKRLERELGSIIKHGFAVLYMIAQKLVAKSEEGGYHVG-SRGSVGSSFVATMAGISE 907

Query: 395  IDPLR-----------------------------------------FSLLFERFLNPDRM 413
            ++PL                                            + FE FL  D  
Sbjct: 908  VNPLPPHYYCPDCHYSEFITDGSVGSGFDLPEKACPMCGATYKQDGHDIPFETFLGFDGD 967

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D++F  + + ++ +Y +  +G   V +  T  ++  K A   V +  Q       
Sbjct: 968  KAPDIDLNFSGEYQAQIHKYTEELFGPTHVFKAGTISTVAEKTAYGFVKKYAQE------ 1021

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
                                     R   +     +RL   +    G+ R    H  G+V
Sbjct: 1022 -------------------------RGLIMTRAEEERL---AIGCTGVKRTTGQHPGGMV 1053

Query: 534  I--GDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            +   D  +     + R   D  SD+  T F+   +    ++K D LG    T+ +   D 
Sbjct: 1054 VVPSDHEVFDFSAVQRPADDPNSDITTTHFDFHSLHDT-ILKLDELGHDVPTMYKYLKDM 1112

Query: 589  LAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEG 634
                   +D + +P +D +   L                  GTLGI +  ++ +R  L  
Sbjct: 1113 TG-----IDANDVPMNDQKVMSLFLSPEALGVTEEEIDCNTGTLGIPEFGTNFVRGMLIE 1167

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
             QP    D++ +  L     +                 +   LI   +     VI  ++ 
Sbjct: 1168 AQPKNFSDLLQISGLSHGTDVWLG--------------NAQELIKNKVCTISNVIGTRDS 1213

Query: 695  VMQI---AQLLSGYSLSEADVLRRAMGKKI--KEEMDKQKERFISGASKNGISKTIAVNI 749
            +M       L    +    ++ R+    K+  +E M   +E        +G+ +    + 
Sbjct: 1214 IMTYLLHKGLEPKMAFKIMEITRKGNAPKLLTEEHMTAMRE--------HGVPQWYIDSC 1265

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------- 800
             ++      Y F K+HAAAY + S +  W K ++P+ F A   T+   + +         
Sbjct: 1266 LKI-----KYMFPKAHAAAYDIASIRLCWFKVYHPLAFYAVIFTVRGGDFDAEAAVQGKS 1320

Query: 801  ----KIK--------------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRI 835
                KI+                    +   + +      +P  +       ++V D +I
Sbjct: 1321 ATKRKIQNLLQMGNERTAKDEGVLTMLQIIHECQARGYSFLPVDLYKSHYSIYEVEDGKI 1380

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
                 A+KGVG   AR + E +  + F S +D  +R     +++ V+E L  AGAL   
Sbjct: 1381 RLPFMALKGVGEAAARSLWETAKTEQFISADDISNRA---GVSKSVIEMLRGAGALGDL 1436



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           V L +HS+ S ++G      ++ +       A+AITD   +
Sbjct: 336 VELHMHSNMSAMDGITPAAKLIKRAYEFGHKAVAITDHGVV 376


>gi|320547752|ref|ZP_08042036.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812]
 gi|320447512|gb|EFW88271.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812]
          Length = 1464

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 160/938 (17%), Positives = 315/938 (33%), Gaps = 179/938 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A         G    +D+  N K+  +       V    + V    G + + +LVS
Sbjct: 585  FLKEAREN-----HGLTNMMDL--NTKLVAEDSYKKARVKHATIYVQNQTGLKNIFKLVS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-- 175
               +    +   RI  + L +   EGL++ T  S G +  A   +    A +    +   
Sbjct: 638  LSNVK-YFEGVARIPRTVL-DAHREGLLLGTACSEGEVFDAVLTSGVDKAVEVAKYYDFI 695

Query: 176  KLFGDRLYVNLQRHRGYD-----RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y  L            R     ++++      P++AT N  ++  ED    ++
Sbjct: 696  EVMPPAIYAPLLAQGTIKDEEGIRQVIRDLIEVGRRLNKPVLATGNVHYIEPEDEIYREI 755

Query: 231  LMA-------VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE------NTVEI 277
            ++        +       +  +P   P  + +  +EM+  F+ L E +       NT + 
Sbjct: 756  IVRSLGQGAPINRPIGRGEDAQPAPLPKAHFRTTNEMLDEFAFLGEDVAYEIVVKNTNDF 815

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
            A R   I  V   +   F+EK  + +          KA            I         
Sbjct: 816  AERFEEIEVVKKDLYTPFLEKSEERV----AEMTYQKAFE----------IYGNPLPDIV 861

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             +R++ EL  I    F+  +L     +  + K    VG  RGS   S  A  + IT+++P
Sbjct: 862  DRRIEKELTSILGNGFAVIYLASQMLVIRSNKRGYLVG-SRGSVGSSFVATMIGITEVNP 920

Query: 398  LR-----------------------------------------FSLLFERFLNPDRMSMP 416
            +                                            + FE FL  D   +P
Sbjct: 921  MPPHYVCPNCQHSEFITDGSVGSGYDLPNKDCPKCGTRYKKDGHDIPFETFLGFDGDKVP 980

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D++F  D +      V++ +G +   +  T G++  + A   V +  +  Y       
Sbjct: 981  DIDLNFSGDDQPSAHLDVRDIFGEQYAFRAGTVGTVADRTAYGFV-KGYERDYG------ 1033

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            K+ P                        +  V+RL   +Q   G+ R    H  GIV+  
Sbjct: 1034 KMYP------------------------EAEVERL---AQGAAGVKRTTGQHPGGIVVIP 1066

Query: 537  R--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
                +    P+         +   T FN   I++  ++K D LG    T+++K  D    
Sbjct: 1067 NYMDVYDFTPVQYPADDLSAEWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRKLQDLSG- 1124

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +D   IP DD +   L +    LG+   E  G    + G+       +  +V    
Sbjct: 1125 ----IDPKDIPADDPDVMALFSGTEVLGVTP-EQIGTPTGMLGIPEFGTNFVRGMVEETH 1179

Query: 652  PGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSL 707
            P     ++  +   +G +  + +   LI   +   + VI  ++ +M            + 
Sbjct: 1180 PTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLDPKMAF 1239

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            +  + +R+    KI +E   ++  +I     N +      +  ++      Y F K+HAA
Sbjct: 1240 TIMERVRKGRWLKISDE---ERNGYIQAMRDNNVPDWYIESCGKI-----KYMFPKAHAA 1291

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-KIK----------------------- 803
            AY +++ + A+ K HYP+ +  A  ++     + K                         
Sbjct: 1292 AYVLMALRVAYFKVHYPLYYYCAYFSIRAKAFDIKTMSTGLDAVKERMAEISTKRKNNEA 1351

Query: 804  -----------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTAR 851
                       +   +  +   +     +      +F +  + +     A+ G+G   A+
Sbjct: 1352 SNVEIDLYTTLELVNEMLERGFKFGQLDLYRSDATEFIIDGDTLIPPFVAMDGLGENVAK 1411

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             I++A  +  F S  +   R          ++ +   G
Sbjct: 1412 QIVKAREEGEFLSKMELRKRGGVSATLVDKMDEMGILG 1449



 Score = 77.7 bits (190), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++  ++D  A     A+AITD  N+ S      +A  
Sbjct: 333 MPEGEKRVEFHAHTNMSTMDALPTVEELIDTAAKWGHKAVAITDHGNVQSFPHGYHRARK 392

Query: 65  AGIQPII 71
            GI+ I 
Sbjct: 393 NGIKAIF 399


>gi|302024523|ref|ZP_07249734.1| DNA polymerase III PolC [Streptococcus suis 05HAS68]
          Length = 1463

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 156/912 (17%), Positives = 305/912 (33%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++  +       V    L V    G + + +LVS        +   RI  + L     
Sbjct: 601  NTELIAEDSYKKARVKHATLYVINQVGLKNMFKLVSLSNTK-YFEGVPRIPRTVLN-AHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NLQRHRGYDR 194
            EGLI+ T    G +           A K    +   ++    LY         + +    
Sbjct: 659  EGLILGTACQEGEVFDDLLSKGIDEAVKTAAYYDFIEVMPPALYAPMIAKEQFKDKAEIE 718

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-------VAHSTVVSQKDRPR 247
                Q++++     LP++AT N  ++  E+    ++++        +  +    +  +P 
Sbjct: 719  ETIKQLIEVGRRAGLPVLATGNVHYIDPEEEIYREIIVRALGQGAPINWTIGNGENAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR--FIEKECDDIQK 305
              P  + +  SEM+  F+ L E+L   + I    + + +     + +        +  ++
Sbjct: 779  PLPKAHFRTTSEMLDEFAFLGESLAREIVITNPNAMLDRFEDVQVVKTDLYTPYIEKAEE 838

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     + 
Sbjct: 839  TVAELTYQKAFE----------IYGNPLPDIIDLRIEKELTSILGNGFAVIYLASQMLVH 888

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++P+                           
Sbjct: 889  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSYGSGFDLP 947

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  D +      V++ +G E   
Sbjct: 948  DKDCEKCGTKYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEENAF 1007

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V R  +  Y +  R                              
Sbjct: 1008 RAGTVGTVAAKTAYGFV-RGYERDYGKFYR------------------------------ 1036

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +    G+ R    H  GI++      +    P+             T FN
Sbjct: 1037 DVEVERL---AAGAAGVKRTTGQHPGGIIVFPDYMDVYDFTPVQYPADDVTASWQTTHFN 1093

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D   IP DD     L +    LG
Sbjct: 1094 FHDIDE-NVLKLDILGHDDPTMVRKLQDL-----SGIDPQTIPADDKGVMALFSGTEILG 1147

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            +   E  G+   + G+       +  +V   +P     ++  +   +G +  + +   LI
Sbjct: 1148 VIP-EQIGIPTGMLGIPEFGTNFVRGMVEETKPTTFSELLQLSGLSHGTDVWLGNAQDLI 1206

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               +     VI  ++ +M            + +  + +R+ +  KI EE   ++  +I  
Sbjct: 1207 KAGIANLSTVIGCRDDIMVYLMHAGLPPKMAFNIMERVRKGLWLKISEE---ERNGYIQA 1263

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
               N +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1264 MKDNKVPDWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPLYYYCAYFSIR 1318

Query: 796  MDNVE-------------KIKK----------------------FCQDARQFNIQIMPPS 820
                +             K+++                         +  +   +     
Sbjct: 1319 AKAFDLATMSGGLERVKAKMEEIALKKKNNEASNVEQDLYTTLELVNEMLERGFKFGKLD 1378

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   DF + DN +     A+ G+G   A+ ++ A A+  F S  +   R        
Sbjct: 1379 LYKSHATDFLIEDNTLIPPFVAMDGLGENVAKQVVAARAEGEFLSKTELRKRGGLSGT-- 1436

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1437 -LVEKMDEMGIL 1447



 Score = 85.4 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++ +++ + AA    A+AITD  N+ S       A  
Sbjct: 332 MPEGEKRVEFHAHTNMSTMDALPAVEDLVARAAAWGHKAVAITDHGNVQSFPHGYHAARK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGI+P+ G + +I         N+          +V  V T      L  + + +  +  
Sbjct: 392 AGIKPLFGMEANIVEDSVPIAYNEADVVLSDATYVVFDVETT----GLSAVNNALIQIAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D       S+  E+ L  F+    D +
Sbjct: 448 SKMHKGNIIAEFDEFIDPGHPLSQFTTDLTGITDEHVR--GSKPLEQVLREFQDFCQDSV 505

Query: 183 YVN 185
            V 
Sbjct: 506 MVA 508


>gi|261407941|ref|YP_003244182.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10]
 gi|261284404|gb|ACX66375.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10]
          Length = 1438

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 180/961 (18%), Positives = 328/961 (34%), Gaps = 208/961 (21%)

Query: 45   AITDTNNLFSALE--FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            AI DT  L   L    S      G++ +          D L                 + 
Sbjct: 566  AIDDTIALAGILNGLLSDVDKTKGVKML----------DRLNDYVGMDLSNTRPFHCGIY 615

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
                 G + L +LVS  +  +  K+   I  S LQE+  +GL++L+G   G         
Sbjct: 616  ALNMTGKKNLYKLVSMSHT-EYFKRVPCIPKSKLQEM-RDGLLVLSGCEKGEFFETVLNK 673

Query: 163  SSQVAEKRLLTFK--KLFGDRLYVNLQR---HRGYDRYR--ESQVVQLAYTHELPLVATN 215
            + + AE+    +   ++    +Y++L         +  +   S+VV++      P++AT 
Sbjct: 674  TEEEAEEIAGFYDVLEIQPLTMYMHLVDKGLVGSPEEIKTAISKVVRIGEKLNKPVIATG 733

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ 269
            N  +L   D    D+ +   H        +    PD + +   EM+  F  L +      
Sbjct: 734  NVHYLEPRDKLFRDITI---HGITGFSPLKDMRKPDAHFRTTEEMLQEFEFLGQDKCYEV 790

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
             + NT E+A R    L++       F +K    I +  + E+RN      +    +    
Sbjct: 791  VVTNTSELADRFE-DLEL-------FPDKLFTPILEGADEEIRNTCYDTAKSIYGENL-- 840

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                 +    RL+ EL  I R  FS  +LI    ++ + ++   VG  RGS   SV A  
Sbjct: 841  ----PEVVVARLEKELEPIIRYGFSANYLISEKLVKKSNRDGYLVG-SRGSVGSSVVATF 895

Query: 390  LTITDIDPLR-------------------------------------------FSLLFER 406
            L I++++PL                                              + FE 
Sbjct: 896  LGISEVNPLPAHYICLNSDCKHSEWFLDGSVPSGFDLPDKACPECGNMMKGEGQDIPFET 955

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL      +PD D++F  + +     + +  +G + V +  T G++  K A     +  +
Sbjct: 956  FLGFKGDKVPDIDLNFSGEYQPHAHNFTKEMFGEKNVFRAGTIGTVAEKTAFGFAKKYEE 1015

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
                                       ++ R+R A         L  ++    G+ R   
Sbjct: 1016 H--------------------------NNKRWRGA--------ELNRLASGCTGVKRSTG 1041

Query: 527  THAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  GIV+      + ++ P+     DV ++   T F+    E   L+K D LG    T+
Sbjct: 1042 QHPGGIVVVPDYIEVEEITPVQYPADDVNAEWKTTHFDYHAFEA-NLLKLDILGHDDPTM 1100

Query: 582  LQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLESSG 627
            ++   D        VD + IP +D +   +  +                T G+ ++ +  
Sbjct: 1101 MRMLQDLTG-----VDPTTIPMNDPKVMSMFNSTEALGVKPEQIRSPVATFGVPEMGTKF 1155

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            +RQ L   QP    D++ +  L     +                 +   LI       + 
Sbjct: 1156 VRQMLVESQPSSFADLLQISGLSHGTGVWLG--------------NAQELIKNGTCNIKT 1201

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            VI  ++ +M      +G   S A  +  ++ K      +   E          + K    
Sbjct: 1202 VIGCRDDIMLFLIYKAGMDASLAFKITESVRKGRGLSQEWIDE----------MKKCKVP 1251

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------- 800
              +        Y F K+HAAAY + + +TA+ K +YP+E+ A   ++  ++ +       
Sbjct: 1252 QWYIDSCLKIQYMFPKAHAAAYVISAVRTAYFKLYYPIEYYATYFSVRAEDFDIELCCQG 1311

Query: 801  --KIKKFCQDARQFNIQIMPPS-------------------------VNTPCVDFKVGDN 833
               I +  ++  Q      P                             +  + FKV  +
Sbjct: 1312 YEAIYRRIEEIEQLGFGASPKEKGMLPILEMALEMTARGFSFKNIDLYQSDALRFKVDGD 1371

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +    +A+ G+G   AR+I  A     F S+EDF  +    K ++  +E L   G    
Sbjct: 1372 SLIPPFSALAGIGDNAARNIAAAREFGEFLSIEDFQQK---SKASKTAVELLTQMGCFRG 1428

Query: 894  F 894
             
Sbjct: 1429 L 1429



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++    ++  +   AA    AIA++D   +    + ++ A   GI+ + 
Sbjct: 335 VEFHLHTTMSTMDAVTPIDRYIKTAAAWGHKAIAVSDHGGVQCYPDAAKNAKKHGIKMMY 394


>gi|219523926|ref|YP_002455987.1| DNA polymerase [Pseudomonas phage PB1]
 gi|190333522|gb|ACE73777.1| DNA polymerase [Pseudomonas phage PB1]
          Length = 1035

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 204/863 (23%), Positives = 354/863 (41%), Gaps = 98/863 (11%)

Query: 10  SFVHLQVHSSYSLLEGAL--SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SF  L+V S YS   GA       I+++    + P +AI D    +  + + Q A  A +
Sbjct: 2   SFPQLRVRSGYS--YGAAYGRFPEIIERAKEIESPFVAIVDDGT-WGHVRWEQAATKAEL 58

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
               G ++ I   D+     + K           L       ++   L S+         
Sbjct: 59  PRGFGMEIPIKCADDGDKELKLKA--------WALAKDT---RKFYRLTSKT-------- 99

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                      +  +GL         P +        + A +          D + +N  
Sbjct: 100 -----------VQNQGL--------SPQEFQDADGVIKFAGEAYAYLDLAGIDYIDIN-- 138

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVAT--NNSLFLSEED-YEAHDVLMAVAHSTVVSQKD 244
                        ++ A     P+V T  N+   +   D   A  V  +V    + ++++
Sbjct: 139 ---PASMVAAHGAMETARAFGKPVVITSYNDMPSIDHADFASAWKVRESVGLRHIATEEE 195

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                   ++  R E         +A+ NT  +  +   +    AP++            
Sbjct: 196 LWARL--RHIMTREE-------FDKAVANTHAVVEQLVDVKLAKAPMIH----------- 235

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              + ++   A  G   RL++G I      Q Y  R   E+  I    F  YFL+VAD +
Sbjct: 236 --LDGDIVALAREGQAYRLSRGHIK--EWTQVYEDRFQEEIKQIQLKDFDSYFLVVADLV 291

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +AKK+ + VGP RGS AGS+  Y L IT++DPL   LLF+RF++  R  +PD DIDF  
Sbjct: 292 AFAKKH-MLVGPARGSSAGSLVCYLLGITEVDPLPHRLLFQRFIDISRSDLPDIDIDFAD 350

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DP 483
             R  V  Y+Q KYG   V ++    +L+A + +  VG+   +P+   D +   I     
Sbjct: 351 THRYLVFEYLQQKYGTWNVVKLGNINTLKAASVIAHVGKRFGIPFHDTDNIKNSIIEYTS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG----LYRHASTHAAGIVIGDRPL 539
           A     + + D     E            EI+    G       H+  HAAGI++ +  +
Sbjct: 411 ADERYGKGLEDT---FEKTQPGRDFREKYEIASACMGDLEIHPSHSGVHAAGILVCNDEV 467

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
                +  +      V Q +    E   L+K D LGL+TL ++Q +           +L 
Sbjct: 468 IDFCTVTSEG-----VAQLDKPDSEYLNLLKIDALGLRTLGVIQDA-----NCVTAQELY 517

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            +P +D     +L      GIFQ E   +R     +     E+I  + +L RPGP+ + +
Sbjct: 518 DLPLNDKAVLDVLNEDKMSGIFQFEGQAVRSVANAINITAFENIDHITALARPGPLSSGM 577

Query: 660 --VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
              Y  R  G+E +    P ++  L  T GV +YQEQ+M I + +  +   +   +R+AM
Sbjct: 578 ATKYIERVAGREPVTYTIPQVEQYLSGTYGVFLYQEQIMSIVKDIGQFDWEQTSAIRKAM 637

Query: 718 GKKIKEE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             +  EE  +K++E FI GA   G++   A  +++ +  F  +GFN+SH+ +YAV++Y T
Sbjct: 638 SARKGEEFFNKRRELFIEGAKTIGVAPEDAHRVWQEMVTFGAWGFNRSHSVSYAVVTYWT 697

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            +MK ++ +E+ AA +    D+ + +    + A++  ++          +++ V D R+ 
Sbjct: 698 CYMKRYHRLEYAAACLRAAKDDQQTVSILRELAKE-GVEYTALDPEHSELNWVVADGRLI 756

Query: 837 YSLAAIKGVGTTTARHIMEASAD 859
             +   KG G   A   +    +
Sbjct: 757 GGIMNAKGFGPAKAERFLRLREE 779


>gi|218148596|ref|YP_002364364.1| hypothetical protein PP141_gp56 [Pseudomonas phage 14-1]
 gi|218059792|emb|CAU13911.1| hypothetical protein [Pseudomonas phage 14-1]
          Length = 1035

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 206/863 (23%), Positives = 358/863 (41%), Gaps = 98/863 (11%)

Query: 10  SFVHLQVHSSYSLLEGAL--SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SF  L+V S YS   GA       I+++    + P +AI D    +  + + Q A  A +
Sbjct: 2   SFPQLRVRSGYS--YGAAYGRFPEIIERAKEIESPFVAIVDDGT-WGHVRWEQAAVKAEL 58

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
               G ++ I   D+ +   + K          +L       ++   L S+         
Sbjct: 59  PRGFGMEIPIKCADDGEKELKLKA--------WVLAKDT---KKFYRLTSKSVQNQG--- 104

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              +     QE   +G+I   G +   +D A                           + 
Sbjct: 105 ---LTPQEFQEA--DGVIKFAGEAYAHLDLAGI---------------DYIDINPASMVA 144

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVAT--NNSLFLSEED-YEAHDVLMAVAHSTVVSQKD 244
            H   +  R             P+V T  N+   +   D   A  V  +V    + ++++
Sbjct: 145 AHGAMETSR---------AFGKPVVITSYNDMPSIDHADFASAWKVRESVGLRHIATEEE 195

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               +   ++  R E          A+ NT  +  + + +    AP++            
Sbjct: 196 LW--SRLRHIMTREE-------FDSAITNTRAVVEQLADVKLAKAPMIH----------- 235

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              + ++   A  G   RL++G I      Q+Y  R   E+  I    F  YFL+VAD +
Sbjct: 236 --LDGDIVALAREGQAYRLSRGHIK--EWTQEYEDRFQEEIKQIQLKDFDSYFLVVADLV 291

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +AKK+ + VGP RGS AGS+  Y L IT++DPL   LLF+RF++  R  +PD DIDF  
Sbjct: 292 AFAKKH-MLVGPARGSSAGSLVCYLLGITEVDPLPHRLLFQRFIDISRSDLPDIDIDFAD 350

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DP 483
             R  V  Y+Q KYG   V ++    +L+A + +  VG+   +P+   D +   I     
Sbjct: 351 THRYLVFEYLQQKYGTWNVVKLGNINTLKAASVIAHVGKRFGIPFHDTDNIKNSIIEYTS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG----LYRHASTHAAGIVIGDRPL 539
           A     + + D     E            EI+    G       H+  HAAGI++ +  +
Sbjct: 411 ADERYGKGLEDT---FEKTHPGRDFREKYEIASACMGDLEIHPSHSGVHAAGILVCNDEV 467

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
                +  +      V Q +    E   L+K D LGL+TL ++Q +           +L 
Sbjct: 468 IDFCTVTSEG-----VAQLDKPDSEYLNLLKIDALGLRTLGVIQDA-----NCVTAQELY 517

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            +P +D     +L      GIFQ E   +R     +     E+I  + +L RPGP+ + +
Sbjct: 518 DLPLNDKAVLDILNEDKMSGIFQFEGQAVRSVANAINITAFENIDHITALARPGPLSSGM 577

Query: 660 --VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
              Y  R  G+E +    P ++  L  T GV +YQEQ+M I + +  +   +   +R+AM
Sbjct: 578 ATKYIERVAGREPVTYTIPQVEQYLSGTYGVFLYQEQIMSIVKDIGQFDWEQTSAIRKAM 637

Query: 718 GKKIKEE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             +  EE  +K++E FI GA   G++   A  +++ +  F  +GFN+SH+ +YAV++Y T
Sbjct: 638 SARKGEEFFNKRRELFIEGAKTIGVAPDDAHRVWQEMVTFGAWGFNRSHSVSYAVVTYWT 697

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            +MK ++ +E+ AA +    D+ + +    + A++  ++          +++ V D R+ 
Sbjct: 698 CYMKRYHRLEYAAACLRAAKDDQQTVSILRELAKE-GVEYTALDPEHSELNWVVADGRLI 756

Query: 837 YSLAAIKGVGTTTARHIMEASAD 859
             +   KG G   A   +    +
Sbjct: 757 GGIMNAKGFGPAKAERFLRLREE 779


>gi|291542732|emb|CBL15842.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus bromii
            L2-63]
          Length = 1452

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 173/917 (18%), Positives = 308/917 (33%), Gaps = 179/917 (19%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
                N K+        PT   I+L V    G + L  L+S  +L +   +  RI  S L 
Sbjct: 606  TNDINTKIAGGDFKKLPTYHQIIL-VKNKTGLKNLYRLISYSHL-NYFYKKPRIPKSELV 663

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRG 191
            +   EGLI+ +   +G +  A          K++ +F           +   +   R   
Sbjct: 664  KY-REGLIIGSACCAGQLYMAILEGKPWGELKQIASFYDYLEIQPAGNNSFMIRDGRFNS 722

Query: 192  YDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             D   E    +++LA     P+ AT +  F+   D E   +LMA        Q       
Sbjct: 723  VDELHEIDRTIIKLAKELGKPVCATCDVHFMDPTDSEFRKILMAGQGFKDAEQ------Q 776

Query: 250  PDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               Y +  +EM+  F  L +       +EN  +IA  C +I  +     P  IE      
Sbjct: 777  APLYFRTTAEMLKEFEWLGKDKAYEYVVENPNKIADMCEYIRPIPKGTFPPNIEG----- 831

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                + +L +      + +            +  + RLD ELN I    FS  ++     
Sbjct: 832  ---AQEQLIDITWKRAKEKYGD------PLPEIVKARLDKELNSITTYGFSVLYMTAQKL 882

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------------------- 398
            +  ++ +   VG  RGS   S  A    I++++PL                         
Sbjct: 883  VADSEAHGYLVG-SRGSVGSSFVATMSGISEVNPLCPHYVCPNCKHSEFITDGSYGSGFD 941

Query: 399  ----------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                               + FE FL      +PD D++F  + + +  RY +  +G   
Sbjct: 942  MPPKNCPECGTLMDQDGHEIPFETFLGFKGDKVPDIDLNFSGEYQSKSHRYTEELFGKNN 1001

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            V +  T  ++  K AL  V +  Q                                R   
Sbjct: 1002 VFKAGTISTVAEKTALGFVKKFAQE-------------------------------RGLV 1030

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQ 557
            +      RL   +    G+ R    H  G+V+  R   +    P+     DV SD   T 
Sbjct: 1031 MHKAEEKRL---AIGCTGVKRTTGQHPGGMVVVPRTNDVYDFCPVQHPANDVNSDNITTH 1087

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT 617
            F+   I    + K D LG    T+      +     +KV +S     D E   L T+   
Sbjct: 1088 FDFHSIHDT-ITKLDELGHDVPTIYHYLELYTGIPVMKVSMS-----DPEVMSLFTSPKA 1141

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHP 676
            LG+ + +    +     +       +  ++   +P    +++      +G +  + +   
Sbjct: 1142 LGVTEEDIDS-KTGTFSLPECGTSFVRGMLIEAQPKTFTDLLQIAGLSHGTDVWLGNAQE 1200

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
            LI         VI  ++ +M       L  G +    +++R+    K+        E   
Sbjct: 1201 LIHNGTCTISEVIGTRDSIMTYLMHKGLEPGMAFKIMEIVRKGNATKL------LTEEHF 1254

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
                ++ + +    +  ++      Y F K+HAAAY + + +  W K H  VE+ AA  T
Sbjct: 1255 KAMREHNVPEWYIDSCMKI-----KYMFPKAHAAAYMIATLRLGWYKVHKAVEYYAAYFT 1309

Query: 794  LEMDNV-------------EKIK----------------------KFCQDARQFNIQIMP 818
            +  +N+             +K+                       +   +     I+ +P
Sbjct: 1310 VRSENLDGAIAMQGHQAVRDKMNNIKQKQSVHEATAKDEAEFQTLQIVNEMMARKIEFLP 1369

Query: 819  PSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
              +       FKV D +I    +++ GVG   A  + E      + S+ED   +    K+
Sbjct: 1370 VDIYKSEAKMFKVEDGKIRLPFSSLPGVGGAAADSLAETGKHTEYLSIEDMQIKT---KV 1426

Query: 878  NRRVLESLVFAGALDCF 894
             + V+E+L   G L   
Sbjct: 1427 TKAVIETLKDVGVLKDL 1443



 Score = 65.8 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 25/53 (47%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           V L +H++ S ++   S  +++++       A+AITD     +  +  + A  
Sbjct: 345 VELHMHTNMSQMDAVTSAGDLVNRAYQWGHKAVAITDHGVAQAFPDAMKAADK 397


>gi|146319608|ref|YP_001199320.1| DNA polymerase III PolC [Streptococcus suis 05ZYH33]
 gi|146321806|ref|YP_001201517.1| DNA polymerase III PolC [Streptococcus suis 98HAH33]
 gi|253752606|ref|YP_003025747.1| DNA polymerase III PolC-type [Streptococcus suis SC84]
 gi|253754432|ref|YP_003027573.1| DNA polymerase III PolC-type [Streptococcus suis P1/7]
 gi|253756365|ref|YP_003029505.1| DNA polymerase III PolC-type [Streptococcus suis BM407]
 gi|166217454|sp|A4W428|DPO3_STRS2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|166217456|sp|A4VXT1|DPO3_STRSY RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|145690414|gb|ABP90920.1| DNA polymerase III, alpha subunit (gram-positive type) [Streptococcus
            suis 05ZYH33]
 gi|145692612|gb|ABP93117.1| DNA polymerase III, alpha subunit (gram-positive type) [Streptococcus
            suis 98HAH33]
 gi|251816895|emb|CAZ52544.1| DNA polymerase III PolC-type [Streptococcus suis SC84]
 gi|251818829|emb|CAZ56672.1| DNA polymerase III PolC-type [Streptococcus suis BM407]
 gi|251820678|emb|CAR47440.1| DNA polymerase III PolC-type [Streptococcus suis P1/7]
 gi|292559223|gb|ADE32224.1| DNA polymerase III, alpha subunit [Streptococcus suis GZ1]
 gi|319759021|gb|ADV70963.1| DNA polymerase III PolC [Streptococcus suis JS14]
          Length = 1463

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 154/912 (16%), Positives = 303/912 (33%), Gaps = 167/912 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++  +       V    L V    G + + +LVS        +   RI  + L     
Sbjct: 601  NTELIAEDSYKKARVKHATLYVINQVGLKNMFKLVSLSNTK-YFEGVPRIPRTVLN-AHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NLQRHRGYDR 194
            EGLI+ T    G +           A K    +   ++    LY         +      
Sbjct: 659  EGLILGTACQEGEVFDDLLSKGIDEAVKTAAYYDFIEVMPPALYAPMIAKEQFKDMAEIE 718

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-------VAHSTVVSQKDRPR 247
                Q++++     LP++AT N  ++  E+    ++++        +  +    +  +P 
Sbjct: 719  ETIKQLIEVGRRAGLPVLATGNVHYIDPEEEIYREIIVRALGQGAPINWTIGNGENAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR--FIEKECDDIQK 305
              P  + +  SEM+  F+ L E+L   + I    + + +     + +        +  ++
Sbjct: 779  PLPKAHFRTTSEMLDEFAFLGESLAREIVITNPNAMLDRFEDVQVVKTDLYTPYIEKAEE 838

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    KA            I           R++ EL  I    F+  +L     + 
Sbjct: 839  TVAELTYQKAFE----------IYGNPLPDIIDLRIEKELTSILGNGFAVIYLASQMLVH 888

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------- 400
             + +    VG  RGS   S  A  + IT+++P+                           
Sbjct: 889  RSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSYGSGFDLP 947

Query: 401  ----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL  D   +PD D++F  D +      V++ +G E   
Sbjct: 948  DKDCEKCGTKYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEENAF 1007

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++ AK A   V R  +  Y +  R                              
Sbjct: 1008 RAGTVGTVAAKTAYGFV-RGYERDYGKFYR------------------------------ 1036

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
            D  V+RL   +    G+ R    H  GI++      +    P+             T FN
Sbjct: 1037 DVEVERL---AAGAAGVKRTTGQHPGGIIVFPDYMDVYDFTPVQYPADDVTASWQTTHFN 1093

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I++  ++K D LG    T+++K  D        +D   IP DD     L +    LG
Sbjct: 1094 FHDIDE-NVLKLDILGHDDPTMVRKLQDL-----SGIDPQTIPADDKGVMALFSGTEILG 1147

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
            +   E  G    + G+       +  +V   +P     ++  +   +G +  + +   LI
Sbjct: 1148 VTP-EQIGTPTGMLGIPEFGTNFVRGMVEETKPTTFSELLQLSGLSHGTDVWLGNAQDLI 1206

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               +     VI  ++ +M            + +  + +R+ +  KI EE   ++  +I  
Sbjct: 1207 KAGIANLSTVIGCRDDIMVYLMHAGLPPKMAFNIMERVRKGLWLKISEE---ERNGYIQA 1263

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
               N +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1264 MKDNKVPDWYIESCGKI-----KYMFPKAHAAAYVMMALRVAYFKVHHPLYYYCAYFSIR 1318

Query: 796  MDNVE-------------KIKK----------------------FCQDARQFNIQIMPPS 820
                +             K+++                         +  +   +     
Sbjct: 1319 AKAFDLATMSGGLERVKAKMEEIALKKKNNEASNVEQDLYTTLELVNEMLERGFKFGKLD 1378

Query: 821  -VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +   DF + ++ +     A+ G+G   A+ ++ A A+  F S  +   R        
Sbjct: 1379 LYKSHATDFLIEEDTLIPPFVAMDGLGENVAKQVVAARAEGEFLSKTELRKRGGLSGT-- 1436

Query: 880  RVLESLVFAGAL 891
             ++E +   G L
Sbjct: 1437 -LVEKMDEMGIL 1447



 Score = 85.4 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++   ++ +++ + AA    A+AITD  N+ S       A  
Sbjct: 332 MPEGEKRVEFHAHTNMSTMDALPAVEDLVARAAAWGHKAVAITDHGNVQSFPHGYHAARK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGI+P+ G + +I         N+          +V  V T      L  + + +  +  
Sbjct: 392 AGIKPLFGMEANIVEDSVPIAYNEADVVLSDATYVVFDVETT----GLSAVNNALIQIAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D       S+  E+ L  F+    D +
Sbjct: 448 SKMHKGNIIAEFDEFIDPGHPLSQFTTDLTGITDEHVR--GSKPLEQVLREFQDFCQDSV 505

Query: 183 YVN 185
            V 
Sbjct: 506 MVA 508


>gi|154500376|ref|ZP_02038414.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC 29799]
 gi|150270881|gb|EDM98164.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC 29799]
          Length = 1390

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 169/940 (17%), Positives = 324/940 (34%), Gaps = 182/940 (19%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             + F +     GI  +     ++     L++  + +        +++L     G + L  
Sbjct: 524  LVPFFKMLEDLGIHTLQSINPEMT---RLRVKGKARR---QPKHLIVLAKNNMGLRNLYT 577

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L+S+ +L +  K+   +  S + +   EGLI+ +   +G +  A   +      KR+ ++
Sbjct: 578  LISKAHL-EHFKRYPIMPKSLINQY-REGLILGSACEAGELFEAVVKHKDFNELKRIASW 635

Query: 175  ------KKLFGDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
                  + L  +   +     +  +  R     +V L    + P+ AT +  FL  ED  
Sbjct: 636  YDFLEIQPLCNNAFMLRKGMVQSEEELRDFNRTIVALGKALDKPVCATGDVHFLDPEDEI 695

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARR 280
               +L+                      K   EM+  FS L +       + NT  +A  
Sbjct: 696  YRHILLDTKGFEDCDAPLPLY------FKTTEEMMEEFSYLGKEDCYNVVVRNTNLVADW 749

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            C        P+       + +D       EL        +    +         Q    R
Sbjct: 750  C----DRINPLPKGLFAPKLED----SAGELSRLVWGKAKSLYGEEV------PQIVSDR 795

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I +  +   ++     +Q + ++   VG  RGS   S+ A+   IT+++ L  
Sbjct: 796  INAELGDILKRHYDVIYMSAQKLVQNSLEHGYLVG-SRGSVGSSLVAFMSGITEVNSLPP 854

Query: 400  ------------------------------------------FSLLFERFLNPDRMSMPD 417
                                                      F++ FE FL      +PD
Sbjct: 855  HYRCPNCKHSDFEIAKELGAGCGADMPDAVCPVCGAQYAKDGFNIPFETFLGFGGDKVPD 914

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  + + +  RY    +G   V +  T G++  K A   V + L+     V R   
Sbjct: 915  IDLNFSGEYQAKAHRYTFELFGETHVFRAGTIGTVAEKTAFGYVKKYLEKRGIHVPR--- 971

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD- 536
                           A+++R                 +    G+ R    H  G+V+   
Sbjct: 972  ---------------AEENRL----------------AHGCTGVKRTTGQHPGGMVVIPQ 1000

Query: 537  -RPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
             R +    P+     D  +D+  T F    +E   L+K D LG    T+++   D     
Sbjct: 1001 NREIYDFCPVQHPADDPNTDIVTTHFEYHSMES-NLLKLDMLGHDDPTMIRMLEDLTGVN 1059

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                  + IP DD +T  L T+   LG       G       +       +  ++    P
Sbjct: 1060 AR----TDIPLDDKKTMSLFTSSEELGFVDDPVLG-PTGAVAIPEFGTSFVRGMLEDTSP 1114

Query: 653  GPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
               D ++  +   +G +  + +   LI          I  ++ +M        + +S   
Sbjct: 1115 SEFDILIRLSGFSHGTDVWLGNAKDLIVNQGIPVGQAIGCRDDIML-------FLISCGM 1167

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
              +R+   KI E +  +K R +   +++ +      + +    K   Y F K+HA AY +
Sbjct: 1168 PEKRSF--KIMESV--RKGRGLPEGAEDEMKAAGVPDWYIGSCKKIKYLFPKAHAVAYVM 1223

Query: 772  ISYQTAWMKTHYPVEFLAASMTLE---------MDNVEKIKKFCQDARQFNIQIMPPS-- 820
            ++++ AW K H P+ F AA  ++             ++ +K   ++ +  + +       
Sbjct: 1224 MAFRIAWFKVHRPLAFYAAYFSIRAKAFDETYMCRGMDVVKAKMKEIKAKDKEATAVEQD 1283

Query: 821  -----------------------VNTPCVDF---KVGDNRIYYSLAAIKGVGTTTARHIM 854
                                     +  ++F   K  D  +    +AI G+G T A  IM
Sbjct: 1284 MLTTLEVCYEFYLRGFTFEHVDLYKSHAINFIFSKTNDKALIPPFSAIPGLGETAAWSIM 1343

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            E    K F S+E+F +     K+++  +E L  AGA+D  
Sbjct: 1344 EQREGKEFISVEEFSAACP--KVSKTHIELLKAAGAMDGM 1381



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 31/82 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++       ++ +       AIAITD     S  +    A    +   +
Sbjct: 284 VELHLHTTMSSMDALTPTKAVVKRAEGWGHRAIAITDHGVAQSFPDAWHAAKNIKVLYGV 343

Query: 72  GCQLDIDMQDNLKMTNQGKTPF 93
                 D+ D + +  + +  F
Sbjct: 344 EAYYINDVDDRVVVHGEQEQDF 365


>gi|150021400|ref|YP_001306754.1| DNA-directed DNA polymerase [Thermosipho melanesiensis BI429]
 gi|149793921|gb|ABR31369.1| DNA-directed DNA polymerase [Thermosipho melanesiensis BI429]
          Length = 823

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 215/832 (25%), Positives = 372/832 (44%), Gaps = 130/832 (15%)

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
             +  +VV+ A+   +  +   ++ F +   +     +       +            +Y 
Sbjct: 16   LKLEEVVKFAHKQGVNSLLLCDTNFHATVKF-----IEECQKYKITPIISYLYNDKIYYA 70

Query: 255  KNRSEMVSIFSDLPEALENTVEIAR-RCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            KN  E+  +F+       NT   +  + ++I +    +   F  K    I +   N L  
Sbjct: 71   KNTEELYELFNAY-----NTNNFSSLKLNYIDKDDVYLAYYFPGKR--RIYELFCNVLGV 123

Query: 314  KAVA-GLEVRLAQGAIAKGYHAQ---------------------DYRQRLDFELNVIARM 351
            K V  G+   +     A GY  +                      Y++RL  EL +I   
Sbjct: 124  KCVEKGVLKNIYCNLEAYGYKLKSFQTLPTAPKNFIDVNKIKNNVYKERLIRELEIIKEK 183

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YF  V    + AK+++I +GPGRGS  GS+ +Y L IT IDP++ +LLFERFLN  
Sbjct: 184  NFLDYFHTVYKITKIAKEHDIAIGPGRGSAVGSLLSYMLGITKIDPIKHNLLFERFLNKG 243

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+D   ++R E+I  ++ ++    V  I TF ++  K                
Sbjct: 244  RKEPPDIDLDVEDEKRKELIELLKKEFK--YVYYISTFSNIGPK---------------- 285

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                            +++ IA++ +   + L+D            L GL  H S HAAG
Sbjct: 286  ----------------TIKKIANEYKISTSELSD------------LLGLPTHKSVHAAG 317

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            I+I   P+   VP+  D      V +++M  + K G IKFD LGLKTLT++ K    + +
Sbjct: 318  IIISKTPIK--VPIKED------VIEWDMDSLNKIGYIKFDILGLKTLTIMNKLEKKIGK 369

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                      P  D  T++ ++   T GIFQLES+  ++ +  ++P  I+++  ++SL R
Sbjct: 370  ----------PKLDKITFNFISKGYTNGIFQLESNISKRIIRAIKPSSIDELSIVISLNR 419

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+       +R+    K        + +L +T G+I++QEQ+M IA+  + +S  EAD
Sbjct: 420  PGPLKAK---LDRELAIAKWKQRKKSFE-LLNDTFGIIVFQEQIMLIAKKYANFSNEEAD 475

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            VLR+ + KK K+ ++   ++       N +S+     + +++ +F++Y FNKSHA AY+ 
Sbjct: 476  VLRKGIAKKEKKLVEPLIKKLKKNIL-NILSENETNELIKIILEFSEYAFNKSHAIAYSY 534

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISY  A+ K H+P +F +  +     +  KI+K   + +    +I+PP++N         
Sbjct: 535  ISYSLAYFKKHFPKDFYSTLLKY---DTTKIEKIIFEMQSRGFKILPPNIN----GNPEN 587

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
                +  L  +KG+     + I+   A+ P++SL+ F  +  +  +N  ++ESL+  G+ 
Sbjct: 588  KKEFHIPLTLVKGINEKIEKEII---ANAPYNSLKGFFEKNPN--INFSIVESLIKIGSF 642

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    SR +LL  L  I+          ++   ++F      FS++I +EK        R
Sbjct: 643  DYLSESRRKLLMKLKEIRSGVNEKILELSS---SLFG---KNFSNEIKIEKL-----WER 691

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
             + E   LGF  S  P D +K +L  + +    E    I    +     V  
Sbjct: 692  CDMEYNTLGFCISK-PFDEFKNLLSPLSVALSREQKLAINVKAV--GGYVSD 740



 Score = 43.4 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 18 SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          S YS     L L  ++         ++ + DT N  + ++F ++     I PI
Sbjct: 7  SPYSFKGSILKLEEVVKFAHKQGVNSLLLCDT-NFHATVKFIEECQKYKITPI 58


>gi|294663796|gb|ADF29350.1| putative DNA polymerase III alpha subunit [Pseudomonas phage JG024]
          Length = 1035

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 207/863 (23%), Positives = 358/863 (41%), Gaps = 98/863 (11%)

Query: 10  SFVHLQVHSSYSLLEGAL--SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SF  L+V S YS   GA       I+++    + P +AI D    +  + + Q A  A +
Sbjct: 2   SFPQLRVRSGYS--YGAAYGRFPEIIERAKEIESPFVAIVDDGT-WGHVRWEQAAVKAEL 58

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
               G ++ I   D+ +   + K          +L       ++   L S+         
Sbjct: 59  PRGFGMEIPIKCADDGEKELKLKA--------WVLAKDT---KKFYRLTSKSVQNQG--- 104

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              +     QE   +G+I   G +   +D A                           + 
Sbjct: 105 ---LTPQEFQEA--DGVIKFAGEAYAHLDLAGI---------------DYIDINPASMVA 144

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVAT--NNSLFLSEED-YEAHDVLMAVAHSTVVSQKD 244
            H   +  R             P+V T  N+   +   D   A  V  +V    + ++++
Sbjct: 145 AHGAMETSR---------AFGKPVVITSYNDMPSIDHADFASAWKVRESVGLRHIATEEE 195

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               +   ++  R E          A+ NT  +  + + +    AP++            
Sbjct: 196 LW--SRLRHIMTREE-------FDSAITNTRAVVEQLADVKLAKAPMIH----------- 235

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              + ++   A  G   RL++G I      Q+Y  R   E+  I    F  YFL+VAD +
Sbjct: 236 --LDGDIVALAREGQAYRLSRGHIK--EWTQEYEDRFQEEIKQIQLKDFDSYFLVVADLV 291

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +AKK+ + VGP RGS AGS+  Y L IT++DPL   LLF+RF++  R  +PD DIDF  
Sbjct: 292 AFAKKH-MLVGPARGSSAGSLVCYLLGITEVDPLPHRLLFQRFIDISRSDLPDIDIDFAD 350

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DP 483
             R  V  Y+Q KYG   V ++    +L+A + +  VG+   +P+   D +   I     
Sbjct: 351 THRYLVFEYLQQKYGTWNVVKLGNINTLKAASVIAHVGKRFGIPFHDTDNIKNSIIEYTS 410

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG----LYRHASTHAAGIVIGDRPL 539
           A     + + D     E            EI+    G       H+  HAAGI++ +  +
Sbjct: 411 ADERYGKGLEDT---FEKTQPGRDFREKYEIASACMGDLEIHPSHSGVHAAGILVCNDEV 467

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
                +  +      V Q +    E   L+K D LGL+TL ++Q +           +L 
Sbjct: 468 IDFCTVTSEG-----VAQLDKPDSEYLNLLKIDALGLRTLGVIQDA-----NCVTAQELY 517

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            +P +D     +L      GIFQ E   +R     +     E+I  + +L RPGP+ + +
Sbjct: 518 DLPLNDKAVLDILNEDKMSGIFQFEGQAVRSVANAINITAFENIDHITALARPGPLSSGM 577

Query: 660 --VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
              Y  R  G+E +    P ++  L  T GV +YQEQ+M I + +  +   +   +R+AM
Sbjct: 578 ATKYIERVAGREPVTYTIPQVEQYLSGTYGVFLYQEQIMSIVKDIGQFDWEQTSAIRKAM 637

Query: 718 GKKIKEE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             +  EE  +K++E FI GA   G++   A  +++ +  F  +GFN+SH+ +YAV++Y T
Sbjct: 638 SARKGEEFFNKRRELFIEGAKTIGVAPDDAHRVWQEMVTFGAWGFNRSHSVSYAVVTYWT 697

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            +MK ++ +E+ AA +    D+ + +    + A++  ++          +++ V D R+ 
Sbjct: 698 CYMKRYHRLEYAAACLRAAKDDQQTVSILRELAKE-GVEYTALDPEHSELNWVVADGRLI 756

Query: 837 YSLAAIKGVGTTTARHIMEASAD 859
             +   KG G   A   +    D
Sbjct: 757 GGIMNAKGFGPAKAEKFLRLRDD 779


>gi|218457858|ref|YP_002418863.1| DNA Polymerase III alpha subunit [Pseudomonas phage SN]
 gi|218379126|emb|CAT99713.1| DNA Polymerase III alpha subunit [Pseudomonas phage SN]
          Length = 1036

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 207/863 (23%), Positives = 357/863 (41%), Gaps = 98/863 (11%)

Query: 10  SFVHLQVHSSYSLLEGAL--SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SF  L+V S YS   GA       I+++    + P +AI D    +  + + Q A  A +
Sbjct: 3   SFPQLRVRSGYS--YGAAYGRFPEIIERAKEIESPFVAIVDDGT-WGHVRWEQAAVKAEL 59

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
               G ++ I   D+ +   + K          +L       ++   L S+         
Sbjct: 60  PRGFGMEIPIKCADDGEKELKLKA--------WVLAKDT---KKFYRLTSKSVQNQG--- 105

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              +     QE   +G+I   G +   +D A                           + 
Sbjct: 106 ---LTPQEFQEA--DGVIKFAGEAYAHLDLAGI---------------DYIDINPASMVA 145

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVAT--NNSLFLSEED-YEAHDVLMAVAHSTVVSQKD 244
            H   +          A     P+V T  N+   +   D   A  V  +V    + ++++
Sbjct: 146 AHGAMET---------ARAFGKPVVITSYNDMPSIDHADFASAWKVRESVGLRHIATEEE 196

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               +   ++  R E          A  NT  +  + + +    AP++            
Sbjct: 197 LW--SRLRHIMTREE-------FDAAAANTRAVVEQLADVKLAKAPMIH----------- 236

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              + ++   A  G   RL++G I      Q+Y  R   E+  I    F  YFL+VAD +
Sbjct: 237 --LDGDIVALAREGQAYRLSRGHIK--EWTQEYEDRFQEEIKQIQLKDFDSYFLVVADLV 292

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +AKK+ + VGP RGS AGS+  Y L IT++DPL   LLF+RF++  R  +PD DIDF  
Sbjct: 293 AFAKKH-MLVGPARGSSAGSLVCYLLGITEVDPLPHRLLFQRFIDISRSDLPDIDIDFAD 351

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DP 483
             R  V  Y+Q KYG   V ++    +L+A + +  VG+   +P+   D +   I     
Sbjct: 352 THRYLVFEYLQQKYGTWNVVKLGNINTLKAASVIAHVGKRFGIPFHDTDNIKNSIIEYTS 411

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG----LYRHASTHAAGIVIGDRPL 539
           A     + + D     E            EI+    G       H+  HAAGI++ +  +
Sbjct: 412 ADERYGKGLEDT---FEKTQPGRDFREKYEIASACMGDLEIHPSHSGVHAAGILVCNDEV 468

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
                +  +      V Q +    E   L+K D LGL+TL ++Q +           +L 
Sbjct: 469 IDFCTVTSEG-----VAQLDKPDSEYLNLLKIDALGLRTLGVIQDA-----NCVTAQELY 518

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            +P +D     +L      GIFQ E   +R     +     E+I  + +L RPGP+ + +
Sbjct: 519 DLPLNDKAVLDILNEDKMSGIFQFEGQAVRSVANAINITAFENIDHITALARPGPLSSGM 578

Query: 660 --VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
              Y  R  G+E +    P ++  L  T GV +YQEQ+M I + +  +   +   +R+AM
Sbjct: 579 ATKYIERVAGREPVTYTIPQVEQYLSGTYGVFLYQEQIMSIVKDIGQFDWEQTSAIRKAM 638

Query: 718 GKKIKEE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             +  EE  +K++E FI GA   G++   A  +++ +  F  +GFN+SH+ +YAV++Y T
Sbjct: 639 SARKGEEFFNKRRELFIEGAKTIGVAPDDAHRVWQEMVTFGAWGFNRSHSVSYAVVTYWT 698

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            +MK ++ +E+ AA +    D+ + +    + A++  ++          +++ V D R+ 
Sbjct: 699 CYMKRYHRLEYAAACLRAAKDDQQTVSILRELAKE-GVEYTALDPEHSELNWVVADGRLI 757

Query: 837 YSLAAIKGVGTTTARHIMEASAD 859
             +   KG G   A   +    D
Sbjct: 758 GGIMNAKGFGPAKAEKFLRLRDD 780


>gi|241888547|ref|ZP_04775855.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
            haemolysans ATCC 10379]
 gi|241864814|gb|EER69188.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
            haemolysans ATCC 10379]
          Length = 1449

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 168/927 (18%), Positives = 310/927 (33%), Gaps = 179/927 (19%)

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
                +ID + +L++ ++    FP      +LV  A+G + L  LVS             I
Sbjct: 599  EYHNEIDEKIDLELAHKRSRTFPCS----ILVKNAKGLKDLFRLVSYSCTKYLNSAKPTI 654

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRH 189
              S L +   E L++ +G     +      +     E  +  +   ++     Y N  R+
Sbjct: 655  PRSLLAQY-REDLLIGSGNGDNEVFEELLNSKEAKVEDIIDFYDYIEIQPKHHYANFIRN 713

Query: 190  -----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                          +++QLA   E  +VAT +  +L E  +    +L      TV S   
Sbjct: 714  ERIADNAELEEILKKLIQLAKKKEKIVVATGDCYYLDEYQHVYRQILRL----TVKSNPG 769

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDD 302
               + P   L    EM+  FS L E L   + I    + + ++++  P+  +      + 
Sbjct: 770  ARDLKPMATLLTTEEMLKEFSYLDEQLREELVIDNTHKINDMIELVVPLKDKLYTPNIEG 829

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                  +E+RN +         +         +   +RL+ EL  I    FS  +LI   
Sbjct: 830  A----ADEVRNLSYDMAHRIYGEEL------PEIVEKRLEKELASIIGNGFSVVYLISHK 879

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF---------------------- 400
             ++ +  +   VG  RGS   S+ A  + IT+++PL                        
Sbjct: 880  LVKKSLDDGYLVG-SRGSVGSSLVATMMEITEVNPLAPHYVCPECKHSEFFLNAEYASGF 938

Query: 401  -------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
                                + FE FL  +   +PD D++F  + +     + +  +G +
Sbjct: 939  DLPNKNCPHCDVKMTKDGQDIPFETFLGFNGDKVPDIDLNFSGEYQATAHNFTKEIFGED 998

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
             V +  T  ++  K A                                         R+ 
Sbjct: 999  YVYRAGTISTVAEKTAYSFT-------------------------------------RDY 1021

Query: 502  RLADPSVDRLLEI---SQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRSD---L 553
               +    R ++I   +   EG  R    H  GI++   D  +    P       +    
Sbjct: 1022 YEKNEIEKRSIDIERIAAGCEGSKRTTGQHPGGILVVPNDMDIFDFTPYQFPADDETSPW 1081

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
              T F+   I    ++KFD LG    T+++K  D        +D   I   D E   + +
Sbjct: 1082 RTTHFDFHSIHD-NILKFDILGHDDPTMIRKLQDL-----SGIDPKTIDVSDPEVMGIFS 1135

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV- 672
            T   LG+ + +         G+       +I ++   +P     +V  +   +G +  + 
Sbjct: 1136 TVEALGVTRDQVDSA-SGTFGIPEFGTNFVIQMLDDTKPTTYSELVQISGLSHGTDVWLG 1194

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQK 729
            +   LI     E + VI  ++ +M          G S    + +R+  G           
Sbjct: 1195 NAQELIKNGTCELKDVIGCRDDIMVYLIHAGLEEGLSFKIMESVRKGKG----------- 1243

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                    K  I K +     +   K   Y F K+HA AY +++ + AW K H P+ +  
Sbjct: 1244 --LTEDFEKEMIDKDVPEWYIDSCKKI-KYMFPKAHACAYVLMALRIAWFKVHQPLTYYC 1300

Query: 790  ASMTLEMDNVE-------------KIK---------------------KFCQDARQFNIQ 815
            A  ++   + +             KIK                     +   +  +    
Sbjct: 1301 AYYSVRASDFDIITVVKGTETLKAKIKEIKTTDKNELSNKDKDALVSYEIANEMMERGFT 1360

Query: 816  IMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      D+ +  N +    + + G+G   A  I++A  +K F S+EDF  R   
Sbjct: 1361 FSKVDLEKSASHDYIIEGNTLIPPFSIVPGLGDNVANKIVQAREEKAFLSIEDFSKR--- 1417

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQL 901
              ++  V+E L   G L      + QL
Sbjct: 1418 GSVSSTVVEYLREMGTLKGL-PEKAQL 1443



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 34/94 (36%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H+  S LEG  S    L +       AIA TDT  + +  E    +    I+PI 
Sbjct: 343 IELNTHTKMSQLEGISSAKEYLSRAIDWGHEAIAFTDTYGVQAYPEICLSSKGKDIKPIY 402

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G    I        TN  +        +V  V T
Sbjct: 403 GLNAFIMDDSITATTNPKELKLKDATYVVFDVET 436


>gi|329767541|ref|ZP_08259064.1| DNA polymerase III [Gemella haemolysans M341]
 gi|328835875|gb|EGF85597.1| DNA polymerase III [Gemella haemolysans M341]
          Length = 1449

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 169/931 (18%), Positives = 312/931 (33%), Gaps = 187/931 (20%)

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
                +ID + +L++ ++    FP      +LV  A+G + L  LVS             I
Sbjct: 599  EYHNEIDEKIDLELAHKRSRTFPCS----ILVKNAKGLKDLFRLVSYSCTKYLNSAKPTI 654

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRH 189
              S L++   E L++ +G     +      +     E  +  +   ++     Y N  R+
Sbjct: 655  PRSLLEQY-REDLLIGSGNGDNEVFEELLNSKEAKVENIIDFYDYIEIQPKHHYANFIRN 713

Query: 190  -----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                          ++++LA   E  +VAT +  +L E  +    +L      TV S   
Sbjct: 714  ERISDNAELEEILKKLIKLAEKKEKIVVATGDCYYLDEYQHVYRQILRL----TVKSNPG 769

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEK 298
               + P        EM+  FS L E       +ENT +I      ++ +   +    IE 
Sbjct: 770  AHDLKPMATFLTTDEMLKEFSYLDEQLREEIVIENTHKINDMIELVIPLKDKLYTPNIEG 829

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D        E+RN +         +         +   +RL+ EL+ I    FS  +L
Sbjct: 830  AAD--------EVRNLSYDMAHKIYGEQL------PEIVEKRLEKELSSIIGNGFSVVYL 875

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------ 400
            I    ++ +  +   VG  RGS   S+ A  + IT+++PL                    
Sbjct: 876  ISHKLVKKSLDDGYLVG-SRGSVGSSLVATMMEITEVNPLAPHYVCPKCKHSEFFLNAEY 934

Query: 401  -----------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  +   +PD D++F  + +     + +  
Sbjct: 935  ASGFDLPNKNCPHCDVKMIKDGQDIPFETFLGFNGDKVPDIDLNFSGEYQATAHNFTKEI 994

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G + V +  T  ++  K A                                        
Sbjct: 995  FGEDYVYRAGTISTVAEKTAYSFT------------------------------------ 1018

Query: 498  FREARLADPSVDRLLEI---SQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRSD 552
             R+    +    R ++I   +   EG  R    H  GI++   D  +    P       +
Sbjct: 1019 -RDYYEKNEVEKRSIDIERIAAGCEGSKRTTGQHPGGILVVPNDMDIFDFTPYQFPADDE 1077

Query: 553  ---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
                  T F+   I    ++KFD LG    T+++K  D        +D   I   D E  
Sbjct: 1078 TSPWRTTHFDFHSIHD-NILKFDILGHDDPTMIRKLQDL-----SGIDPKTIDVSDPEVM 1131

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             + +T   LG+ + +         G+       +I ++   +P     +V  +   +G +
Sbjct: 1132 GIFSTVEALGVTRDQVDSA-SGTFGIPEFGTNFVIQMLDDTKPTTYSELVQISGLSHGTD 1190

Query: 670  KIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEM 725
              + +   LI     E + VI  ++ +M          G S    + +R+  G       
Sbjct: 1191 VWLGNAQELIKNGTCELKDVIGCRDDIMVYLIHAGLEEGLSFKIMESVRKGKG------- 1243

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
                E F      N + +    +  ++      Y F K+HA AY +++ + AW K H P+
Sbjct: 1244 --LTEDFEKAMIDNNVPEWYIDSCKKI-----KYMFPKAHACAYVLMALRIAWFKVHQPL 1296

Query: 786  EFLAASMTLEMDNVE-------------KIK---------------------KFCQDARQ 811
             +  A  ++   + +             KIK                     +   +  +
Sbjct: 1297 TYYCAYYSVRASDFDIITVVKGAETLKAKIKEIKTTDKNELSNKDKDALVSYEIANEMME 1356

Query: 812  FNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
                     +      D+ +  N +    + + G+G   A  I++A  +K F S+EDF  
Sbjct: 1357 RGFTFSKVDLEKSASHDYIIEGNTLIPPFSIVPGLGDNVANKIVQAREEKAFLSIEDFSK 1416

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            R     ++  V+E L   G L      + QL
Sbjct: 1417 R---GSVSSTVVEYLREMGTLKGL-PEKAQL 1443



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 33/94 (35%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H+  S LEG  S    + +       AIA TDT  + +  E    +    I+PI 
Sbjct: 343 IELNTHTKMSQLEGISSAKEYIARAMDWGHEAIAFTDTYGVQAYPEICLSSKGKDIKPIY 402

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G    I        TN           +V  V T
Sbjct: 403 GLNAFIMDDSITATTNPKNLKLKDATYVVFDVET 436


>gi|237734614|ref|ZP_04565095.1| DNA-directed DNA polymerase [Mollicutes bacterium D7]
 gi|229382434|gb|EEO32525.1| DNA-directed DNA polymerase [Coprobacillus sp. D7]
          Length = 1440

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 160/921 (17%), Positives = 302/921 (32%), Gaps = 167/921 (18%)

Query: 84   KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG 143
            ++T            +  L     G + + +LVS            RI    L+    EG
Sbjct: 581  ELTGDDVYKIVYPYHMTALALNKAGLKNMFKLVSEANTK-YFHNGSRIPKERLEHY-REG 638

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL---FGDRLYVNLQRHRGYDRYRE--- 197
            L+  +   +G +  A    S +  E+ +  +  +     +  Y  + R +  D       
Sbjct: 639  LLYGSSCYNGDVFEAALNLSDEKLERAMEFYDYIEIQPLEDYYHLVDRGKLQDTDELIKS 698

Query: 198  -SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-------VAHSTVVSQKDRPRVT 249
              +++  A   +  +VAT +  FL   D    DV ++            +  +++     
Sbjct: 699  LHRIIDCAKKLDKLIVATGDVHFLEVRDKIFRDVFISNPTIGIGHRAHPLCDRRNPKAKN 758

Query: 250  PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P  YL+  +EM+  +  LP  E  E  V    + + +++   P+  +    + D      
Sbjct: 759  PCQYLRTTNEMLEGYPYLPQDEVFEYVVTNTNKIADMVEEIKPVHDKLFTPKIDGA---- 814

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L+                      Q   +RL+ EL+ I +  F   + I    ++ +
Sbjct: 815  DENLKKICYDTAHKTYGN------PLPQIVEKRLEKELSNIIKHGFGVIYYISHLLVKKS 868

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
              +   VG  RGS   S  A    IT+++PL                             
Sbjct: 869  NDDGYLVG-SRGSVGSSFVATMSGITEVNPLPPHYVCLHCSHSEFLEEGIVADGYDLEDK 927

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                          ++ FE FL  +   +PD D++F  + +     + +  +G + V + 
Sbjct: 928  VCPKCGKIMKGEGHNIPFETFLGFNADKVPDIDLNFSGEYQANAHAFTKEIFGEDHVFRA 987

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T  ++  K A           Y       +L+  D                        
Sbjct: 988  GTISTVAEKTA-----------YGYAKGYAELMGTDQTI--------------------- 1015

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMY---RDVRSDLPVTQFNMK 561
                L  I+    G+ R    H  GI++    +      P      D+ +    T F+  
Sbjct: 1016 RSAELERIAAGCGGVKRTTGQHPGGIIVIPGDMDVFDFTPYQFPADDLNAAWKTTHFDFH 1075

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I    ++KFD LG    T+ +   D        VD   IP +D +   L T+   LG  
Sbjct: 1076 AIHD-NVLKFDILGHVDPTVTRFLQDLTG-----VDPKDIPTNDKKVMSLFTSSEALGC- 1128

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
             L+  G +    G+       +  ++   +P   +++V+ +   +G +  + +   LI  
Sbjct: 1129 NLDFIGCKNGALGLPEFGTSFVRGMLDQTQPKTFNDLVIISGLSHGTDVYLGNAETLIKS 1188

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
                   VI  ++ +M +  +  G    +A  +   + K     +  +K+       +  
Sbjct: 1189 GTCTLSEVIGCRDDIM-VYLIEKGLPNKDAFDIMECVRKGKSPVVFPEKK------YEEL 1241

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            + +      +    K   Y F K+HAAAY + + + AW K +YP E+ A   T    +  
Sbjct: 1242 MKEYNVPQWYIDSCKKIKYMFPKAHAAAYVLSAIRVAWWKLYYPREYYAVYFTTRC-DFY 1300

Query: 801  KIKKFCQ------------------------------------DARQFNIQIMPPSVNTP 824
             I+   Q                                    +  +      P S+   
Sbjct: 1301 DIETLVQGKDAIMARRAEITQLRAERSSSNKDEGLWDIFEIALEMIERGFHFNPVSLEYS 1360

Query: 825  -CVDFKVGDNRI---YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                F +  N         +AI  +G + A+ +++A AD PF S ED   R      + +
Sbjct: 1361 QASKFILDPNDEKGLIPPFSAIDALGESVAKTVVDARADGPFLSKEDVIKRTKLNNSHIK 1420

Query: 881  VLESLVFAGALDCFGYSRMQL 901
             L      G  +     R QL
Sbjct: 1421 TLS---KMGVFNGM-QERNQL 1437



 Score = 75.4 bits (184), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 35/66 (53%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS  S ++G  ++   ++ +A+    AIA+TD  N+ S  E    A  AGI+ I 
Sbjct: 317 VELHTHSKMSAMDGVGTITQYINAVASWGHKAIAVTDHGNVQSFPEAQMAAGKAGIKMIY 376

Query: 72  GCQLDI 77
           G + ++
Sbjct: 377 GVEFNM 382


>gi|160915589|ref|ZP_02077800.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991]
 gi|158432709|gb|EDP10998.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991]
          Length = 1447

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 160/918 (17%), Positives = 303/918 (33%), Gaps = 183/918 (19%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK---------QSVRICLSWLQEIGTEG-L 144
                + +LV  A G + L ELV+  +                  RI    +++    G L
Sbjct: 585  RAKHVTILVKNAAGLKELFELVTLSHTKYLSYSDKSTGNIVAEPRILREEIEKRRRNGNL 644

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-----KKLFGDRLYVNLQRHRGYDRYRE-- 197
            ++ +   +G +         +   K +  +     + L   R  V        DR +E  
Sbjct: 645  LIGSSCLNGEVFDIAQTRGEEELLKVMQFYDYIELQPLGNYRHLVERDSIESMDRLKEIL 704

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA------VAH--STVVSQKDRPRVT 249
              +V+ A      ++A+ +  +    +    D+ ++      + H       +K R   +
Sbjct: 705  RSIVEAAKKCGKRIIASGDVHYAHPNEKMIRDIYISSQAIGGIRHPLYIYNQEKRRKFKS 764

Query: 250  PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            PD +L    EM+  F+ L E  A    V      + +++V  P+  R    + +      
Sbjct: 765  PDQHLLTTKEMLKEFAWLGEKEAYTYVVTNTNAIADMIEVVKPVKDRLYPPDIEG----S 820

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + +L +        +                +RL  EL+ I    F   + I    ++ +
Sbjct: 821  DQKLIDICYENAHKKYGPNL------PDIVEERLKRELDSIIGHGFYVVYYISHLLVKKS 874

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------------- 398
              +   VG  RGS   S  A    IT+++PL                             
Sbjct: 875  LNDGYLVG-SRGSVGSSFVATMAEITEVNPLAPHYVCPKCHYVKFFTDGSVADGFDLPDI 933

Query: 399  ------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL  +   +PD D++F  D +     Y +  +G + V + 
Sbjct: 934  QCPNCGETIRGDGHDIPFETFLGFEGDKVPDIDLNFSGDYQPTAHAYTKEVFGEDHVYRA 993

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  + A   V                            + +  +   R A     
Sbjct: 994  GTIGTVATQTAFGYVKGYQ------------------------EEMGIEGGMRNA----- 1024

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMY---RDVRSDLPVTQFNMK 561
               ++L +++  EG+ R    H  GI++    L      P+     +  +D   T F   
Sbjct: 1025 ---QVLRLAKGCEGVKRTTGQHPGGIIVIPLDLDVHDFTPVQYPANNPNADWKTTHFEFH 1081

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I    ++KFD LG    T ++       QR   VD   IP +D ET  + +    L I 
Sbjct: 1082 DIHD-NVLKFDILGHVDPTAMRML-----QRISGVDPVTIPMNDPETMSIFSKVDALKI- 1134

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
                +  +    G+     + +  ++ L  P   D ++  +   +G +  + +   LID 
Sbjct: 1135 DTSKACDKTGAAGLPEFGTKFVRGILELTEPTTFDELLKISGLSHGTDVWLGNAKDLIDQ 1194

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
             +   + VI  ++ +M +  L  G     A  +  ++ K         ++ +I    K+G
Sbjct: 1195 NICTLKSVIGCRDDIM-VYLLHKGLEPKLAFTIMESVRKGK-----GLRDEWIPEMKKHG 1248

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            +      +  ++      Y F K+HA AY +++ + AW K H P  +     ++  D  +
Sbjct: 1249 VEDWYIESCKKI-----KYMFPKAHATAYVMMAIRIAWFKVHLPQYYYCMFFSIRCDAYD 1303

Query: 801  KIKKFCQ----------------------------------------DARQFNIQIMPPS 820
             I+   Q                                        +            
Sbjct: 1304 -IQTMIQGEQAIRRRMNDIDERLRNNETKRDVSKKDKDIYNTLELALEMVLRGYFFRNID 1362

Query: 821  VNTPC-VDFKVGDNRIYY---SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            +N     +F V  +  +Y      +I G+G   A  ++EA     F S ED   R     
Sbjct: 1363 LNRSASSEFIVDPDNDHYLIPPFTSIDGLGENVADTVVEARKHGAFLSKEDLQRRTSLSG 1422

Query: 877  LNRRVLESLVFAGALDCF 894
               + LES+   G L+  
Sbjct: 1423 TLIKTLESM---GVLEGL 1437



 Score = 61.5 bits (148), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 29/72 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH+  S ++G   +   ++        AIA TD   + +  +   K  A   +   
Sbjct: 307 VELHVHTKLSEMDGVCGIEEYIETANEWGMNAIACTDHLVVQAFPKAQHKVAAINKKRET 366

Query: 72  GCQLDIDMQDNL 83
             ++   ++ N+
Sbjct: 367 PFKMIYGIEMNM 378


>gi|167756906|ref|ZP_02429033.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402]
 gi|167703081|gb|EDS17660.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402]
          Length = 1445

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 160/921 (17%), Positives = 302/921 (32%), Gaps = 167/921 (18%)

Query: 84   KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG 143
            ++T            +  L     G + + +LVS            RI    L+    EG
Sbjct: 586  ELTGDDVYKIVYPYHMTALALNKAGLKNMFKLVSEANTK-YFHNGSRIPKERLEHY-REG 643

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL---FGDRLYVNLQRHRGYDRYRE--- 197
            L+  +   +G +  A    S +  E+ +  +  +     +  Y  + R +  D       
Sbjct: 644  LLYGSSCYNGDVFEAALNLSDEKLERAMEFYDYIEIQPLEDYYHLVDRGKLQDTDELIKS 703

Query: 198  -SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-------VAHSTVVSQKDRPRVT 249
              +++  A   +  +VAT +  FL   D    DV ++            +  +++     
Sbjct: 704  LHRIIDCAKKLDKLIVATGDVHFLEVRDKIFRDVFISNPTIGIGHRAHPLCDRRNPKAKN 763

Query: 250  PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            P  YL+  +EM+  +  LP  E  E  V    + + +++   P+  +    + D      
Sbjct: 764  PCQYLRTTNEMLEGYPYLPQDEVFEYVVTNTNKIADMVEEIKPVHDKLFTPKIDGA---- 819

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L+                      Q   +RL+ EL+ I +  F   + I    ++ +
Sbjct: 820  DENLKKICYDTAHKTYGN------PLPQIVEKRLEKELSNIIKHGFGVIYYISHLLVKKS 873

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
              +   VG  RGS   S  A    IT+++PL                             
Sbjct: 874  NDDGYLVG-SRGSVGSSFVATMSGITEVNPLPPHYVCLHCSHSEFLEEGIVADGYDLEDK 932

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                          ++ FE FL  +   +PD D++F  + +     + +  +G + V + 
Sbjct: 933  VCPKCGKIMKGEGHNIPFETFLGFNADKVPDIDLNFSGEYQANAHAFTKEIFGEDHVFRA 992

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T  ++  K A           Y       +L+  D                        
Sbjct: 993  GTISTVAEKTA-----------YGYAKGYAELMGTDQTI--------------------- 1020

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMY---RDVRSDLPVTQFNMK 561
                L  I+    G+ R    H  GI++    +      P      D+ +    T F+  
Sbjct: 1021 RSAELERIAAGCGGVKRTTGQHPGGIIVIPGDMDVFDFTPYQFPADDLNAAWKTTHFDFH 1080

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I    ++KFD LG    T+ +   D        VD   IP +D +   L T+   LG  
Sbjct: 1081 AIHD-NVLKFDILGHVDPTVTRFLQDLTG-----VDPKDIPTNDKKVMSLFTSSEALGC- 1133

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
             L+  G +    G+       +  ++   +P   +++V+ +   +G +  + +   LI  
Sbjct: 1134 NLDFIGCKNGALGLPEFGTSFVRGMLDQTQPKTFNDLVIISGLSHGTDVYLGNAETLIKS 1193

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
                   VI  ++ +M +  +  G    +A  +   + K     +  +K+       +  
Sbjct: 1194 GTCTLSEVIGCRDDIM-VYLIEKGLPNKDAFDIMECVRKGKSPVVFPEKK------YEEL 1246

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            + +      +    K   Y F K+HAAAY + + + AW K +YP E+ A   T    +  
Sbjct: 1247 MKEYNVPQWYIDSCKKIKYMFPKAHAAAYVLSAIRVAWWKLYYPREYYAVYFTTRC-DFY 1305

Query: 801  KIKKFCQ------------------------------------DARQFNIQIMPPSVNTP 824
             I+   Q                                    +  +      P S+   
Sbjct: 1306 DIETLVQGKDAIMARRAEITQLRAERSSSNKDEGLWDIFEIALEMIERGFHFNPVSLEYS 1365

Query: 825  -CVDFKVGDNRI---YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                F +  N         +AI  +G + A+ +++A AD PF S ED   R      + +
Sbjct: 1366 QASKFILDPNDEKGLIPPFSAIDALGESVAKTVVDARADGPFLSKEDVIKRTKLNNSHIK 1425

Query: 881  VLESLVFAGALDCFGYSRMQL 901
             L      G  +     R QL
Sbjct: 1426 TLS---KMGVFNGM-QERNQL 1442



 Score = 75.4 bits (184), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 35/66 (53%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS  S ++G  ++   ++ +A+    AIA+TD  N+ S  E    A  AGI+ I 
Sbjct: 322 VELHTHSKMSAMDGVGTITQYINAVASWGHKAIAVTDHGNVQSFPEAQMAAGKAGIKMIY 381

Query: 72  GCQLDI 77
           G + ++
Sbjct: 382 GVEFNM 387


>gi|229829203|ref|ZP_04455272.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM
            14600]
 gi|229792366|gb|EEP28480.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM
            14600]
          Length = 1532

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 161/900 (17%), Positives = 305/900 (33%), Gaps = 176/900 (19%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
              +L+     G   L +L S  +L    ++  +I  S L E   EGLI+ +   +G + +
Sbjct: 691  HCILIARNDIGRINLYKLTSLSHLR-FFQRQAKIPKS-LVEKYREGLIIGSACEAGELFQ 748

Query: 158  AFFFNSSQVAEKRL------LTFKKLFGDRLYVNLQRHRG--YDRYR--ESQVVQLAYTH 207
            A           R+      L  + +  +R  +          +  R    ++V+L    
Sbjct: 749  ALEGGRPPQEISRIVSFYDYLEIQPIGNNRFLLEADNDNIQTEEDLRDFNRRIVRLGEDF 808

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
              P+ AT +  FL+ ED     +   +         D     P  +L    EM+  FS L
Sbjct: 809  HKPVCATGDVHFLNPEDEIYRRI---IQVGKGFKDADH---QPPLFLHTTEEMLEEFSYL 862

Query: 268  PE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
                     + NT  IA  C  I        P  I           +  LR         
Sbjct: 863  GMDKAREVVITNTNRIADMCERIHPTRPDKCPPVI--------ANSDQMLRTICHNRAHE 914

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
               +   A         +R++ ELN I    ++  ++I    +  + ++   VG  RGS 
Sbjct: 915  LYGKKLPA------IVEERMERELNSIIGNGYAVMYIIAQKLVWKSNEDGYLVG-SRGSV 967

Query: 382  AGSVTAYALTITDIDPLR------------------------------------------ 399
              S  AY   IT+++ L+                                          
Sbjct: 968  GSSFAAYLAGITEVNSLQAHYLCPDCKFVDFDSDQVKAFAGRSGCDMPDRKCPRCGADLM 1027

Query: 400  ---FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
               F + FE FL       PD D++F  + + +  +Y +  +G  +  +  T G+L  K 
Sbjct: 1028 KLGFDIPFETFLGFKGNKEPDIDLNFSGEYQAKAHKYTEVIFGEGQTFKAGTIGTLADKT 1087

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A   +                                     R        +DR++   Q
Sbjct: 1088 AYGYIKNYY-------------------------------EERGIHKRSCEIDRIV---Q 1113

Query: 517  KLEGLYRHASTHAAGIVIGD--RPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKF 571
               G+ R    H  GIV+      ++   P+     D+ SD+  T F+   I+   L+K 
Sbjct: 1114 GCVGIRRTTGQHPGGIVVLPVGEEINSFTPVQHPADDMTSDIITTHFDYHKID-GNLLKL 1172

Query: 572  DFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES--SGMR 629
            D LG    T+++K  D    R        IP DD     L     +LGI + +    G  
Sbjct: 1173 DILGHDDPTMIRKLEDLTGLRAT-----DIPLDDKAVMGLFMGTDSLGIPEGDQLWGGTS 1227

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGV 688
                G+     +  + ++   +P    +++  +   +G +  + +   LI   +      
Sbjct: 1228 MGTLGIPEFGTDFAMGMLRDAKPKEFSDLIRISGLSHGTDVWLGNAKDLIQQGIATISTA 1287

Query: 689  IIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
            I  ++ +M       + S  S +  + +R+ +  K   ++     ++ +   ++G+    
Sbjct: 1288 ICCRDDIMVYLINQGMDSEESFTIMERVRKGLVAK--GKVADDWAKWTADMKEHGVPDWY 1345

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA--------------- 790
              +  ++      Y F K+HAAAY +++++ A+ K +YP+ + AA               
Sbjct: 1346 IGSCEKI-----KYMFPKAHAAAYVMMAWRVAYCKVYYPLAYYAAFFSIRATAFSYEIMC 1400

Query: 791  ------------------SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP-CVDFKVG 831
                               ++ +  +  +  +  Q+      + +P  +       FK+ 
Sbjct: 1401 RGRNYLETILAEYDKRRDQLSNKEQDTYRDMRIVQEMYVRGYEFLPLDLYQSDARYFKIV 1460

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            D ++    A+I G+G   A  +  A+A   F S++D   R    +     L  L   G +
Sbjct: 1461 DGKLLPPFASIDGMGDKAAETLAIAAAQGKFLSMDDLKERGKLSQTIADKLNELGLTGDM 1520



 Score = 66.5 bits (161), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-SQKACAAGIQPI 70
           V L  H+  S ++G  ++ +I+ +       A+AITD   + +  +   +       + I
Sbjct: 413 VELHCHTKMSDMDGVSAVEDIVRQARHFGHKALAITDHGVVQAFPDADHEIGKDPDFKVI 472

Query: 71  IGC 73
            G 
Sbjct: 473 YGM 475


>gi|104161981|emb|CAJ75690.1| DNA polymerase III, alpha subunit [uncultured Thermotogales
            bacterium]
          Length = 1428

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 166/933 (17%), Positives = 309/933 (33%), Gaps = 181/933 (19%)

Query: 57   EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            +F Q A   G+Q +   +         K+             I +L    +G + L  LV
Sbjct: 575  KFVQLAKKRGVQNVNELE---------KLRKNQNLDSLKPFHISILAKNKKGLENLYRLV 625

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            +  +         RI  S L ++  EGL++ +   SG + +A+   +S    + +  F  
Sbjct: 626  TASHTK-YFYMKPRIPKSLLADM-REGLLIGSACVSGELSKAYIGGASTDELEEIAKFYD 683

Query: 177  LFGDRLYVNLQRHRGYDRYRESQVVQL-------AYTHELPLVATNNSLFLSEEDYEAHD 229
                    N+    G        + ++            +P+V T +  FL+  D     
Sbjct: 684  YIEVMPLDNIDTSEGETNMSRETLAKMYREFYKVGKRLNIPVVMTGDVHFLNPHDDIFRA 743

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--------ALENTVEIARRC 281
             + A          D  +  P  YL    EM+   S++ E         ++N+  IA   
Sbjct: 744  AINAAQ------DYDNFQNQPSLYLHTTEEMLDKASEIFEDEIIVREVVIDNSRYIASLI 797

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
              +  V   + P  IE          + E+R  A+   E              +   +RL
Sbjct: 798  EEVTPVEGKLHPPVIEG--------ADEEVRKMAIENAESLYG------SPLPEIVERRL 843

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + EL  I    ++  +LI    ++ + ++   VG  RGS   S+ A  + IT+++PL   
Sbjct: 844  NRELEAIIGHGYAVLYLIAQKMVKKSNEDGYVVG-SRGSVGSSLVANVIGITEVNPLHPH 902

Query: 402  LL----------------------------------------FERFLNPDRMSMPDFDID 421
             L                                        FE FL  +   +PD D++
Sbjct: 903  YLCPECGKSIFPETDLECGYDLPDMNCPICGKKMSKNGQSIPFETFLGFEGDKVPDIDLN 962

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  + ++    +++  +G + V +  T  +L  + A   V                    
Sbjct: 963  FSGEYQERAHSFIEELFGRDHVFRAGTISTLAERTAFGFV-------------------- 1002

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS- 540
                         +   R  R A+        I++ + G+ R    H  G++I  + +  
Sbjct: 1003 ---------RAYSEKSGRNLRRAEQE-----RIARGIVGVRRTTGQHPGGLMIVPKDMDV 1048

Query: 541  -QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
                P+     D +     T F  + I    L+K D LG    T ++   D        V
Sbjct: 1049 HSFTPVQHPANDTKGSTLTTHFAYEVIHD-DLVKIDALGHDDPTFIKMLKDITG-----V 1102

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D   IP DD ET  + ++  +LG+   E  G      G+       + +++S  RP    
Sbjct: 1103 DPEKIPMDDPETLSIFSSLKSLGVKYHEL-GTDMGTLGIPEFGTTFVRSMLSDTRPSTFG 1161

Query: 657  NIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  +   +G +  ++    +I         VI  ++ +M    +  G    +A  +  
Sbjct: 1162 ELVRISGLSHGTDVWLNNAKDIITSRQASLSNVIACRDDIMNY-LIARGMEPKDAFKIME 1220

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
             + K      + ++E    G          A   F    K   Y F ++HAAAY  + Y+
Sbjct: 1221 KVRKGKGLSEEDEREVRSCG----------APEWFVNSCKKIKYLFPRAHAAAYVSMGYR 1270

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVE--------------------------------KIK 803
             A+ K HYP+ F +   +++    +                                 + 
Sbjct: 1271 VAYFKVHYPLAFYSTYFSIKGGEFDIDICTSDTNSIKKEIIRLRADQDRNVKDRAKETLL 1330

Query: 804  KFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            +   +        +   +  +    F +    +      ++ +G   AR I +    + F
Sbjct: 1331 EVVMEMIYRGFNFLNVDLMKSHPTRFLIEGKSLRIPFNRLQNMGYKAARSIEQEREKRVF 1390

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             S+ED   R      N+  +E L   GAL    
Sbjct: 1391 SSVEDLVRRTSL---NKTSVEMLRKYGALKGLA 1420



 Score = 85.4 bits (210), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S L+  + +  +++ +      A AITD   + S  EF   A   GI+PI 
Sbjct: 330 VELHLHTKMSALDSVVDVRELVNTLKDWGHEAAAITDHGVVQSIPEFYFAAKKKGIKPIF 389

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +  +         N  +       ++ L
Sbjct: 390 GMEGYMINDSQQISMNLDEEDSSLDDALFL 419


>gi|170016990|ref|YP_001727909.1| DNA polymerase III, alpha subunit [Leuconostoc citreum KM20]
 gi|169803847|gb|ACA82465.1| DNA polymerase III, alpha subunit, Gram-positive type [Leuconostoc
            citreum KM20]
          Length = 1437

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 152/926 (16%), Positives = 303/926 (32%), Gaps = 173/926 (18%)

Query: 68   QPIIGCQLDIDMQD----NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            + I        + D    N  MT              LLV    G + L +LVSR  + +
Sbjct: 577  RLIKEANTTYALTDHEQLNDHMTEGDAWKHGRPVHATLLVQNTVGLKNLYKLVSRSNI-E 635

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL------ 177
               +  RI  S L ++  EGL++ TG +SG +           A ++   +  +      
Sbjct: 636  FFARVPRIPRSVLNQL-REGLLIGTGDTSGDVIMTLIEKGRVAALQKAKYYDFIEIQPTA 694

Query: 178  -FGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
             +   +   L  +    +     +V +    +  +V T +  + + ED     +L+    
Sbjct: 695  NYAPMIESGLIANESQLQSILKDMVSIGDELDKTVVVTGDIKYTNPEDRIYRQILI---- 750

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAP 290
             T           P++Y +   +++  F+ + +       ++NT +IA     I  + + 
Sbjct: 751  GTQPGNPQNRTALPENYFRTTQQLLDDFAFMGDTLARQLVIDNTHKIANCLETITPLKSG 810

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
              P  I    D        EL  +       R     +      +  + R+D EL  I  
Sbjct: 811  SYPPNIPTAGD--------ELTRRTFENA-KRWYGDPL-----PEVIQARIDQELEAIIG 856

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF---------- 400
              F+ +++I    ++ + K+   VG  RGS   S  A    IT+++P             
Sbjct: 857  NGFAPHYMIAQKLVEKSNKDGYLVG-SRGSVGSSFVATMSGITEVNPFAPHYRSAHGDYF 915

Query: 401  --------------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                                            ++ FE F+      +PD D++F  D + 
Sbjct: 916  ELADPKIYESGYDLPDKPDPNHPGEMLIGDGQNIPFETFMGFKGDKVPDIDLNFSGDYQP 975

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
                Y++  +G   V +  T  ++  K A   V                           
Sbjct: 976  IAHNYMKVLFGEHNVYRAGTIATVAEKTAFGYV--------------------------- 1008

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY 546
                     F      +     +  ++Q + G+ R    H  GI+I  R   +    P+ 
Sbjct: 1009 -------KGFERDHDKNYRGTEVERLAQGITGVKRTTGQHPGGILIVPREYDVYDFTPVQ 1061

Query: 547  RDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
                        T  +   I    L+K D LG    T+++   D        +D   IP 
Sbjct: 1062 YPADDQKSLWQTTHMDYHAIHD-NLLKMDILGHDDPTMVRTLKDMSG-----IDPQSIPV 1115

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D     L T+   LG+   E    +    G+       +  ++   +P     ++  + 
Sbjct: 1116 NDPGVLSLFTSTDALGVNP-EQIFSKTGTLGLPEFGTNFVRGMLEETQPHTYSELLQISG 1174

Query: 664  RKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              +G +  + + + LI+        VI  ++++M       G+  ++A  +   + K   
Sbjct: 1175 LSHGTDVWLGNANELIENGTATIGTVIGTRDKIMTDLINW-GFPAADAFNVMEKVRKGKG 1233

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
                      I+   +  +        +        Y F ++HAAAY +++ + A+ K +
Sbjct: 1234 ----------ITDEYQAQLRAAKIPEWYIQSMLKIKYMFPRAHAAAYVLMALRIAYFKVY 1283

Query: 783  YPVEFLAASMTLEMDNVEKIK---------------------------------KFCQDA 809
            +P  + A   ++  D  + +                                  +   +A
Sbjct: 1284 FPTIYYATYFSVRADQFDIVAMSRGKNATKEALKRLRALGNDATVGDKNLLTVLEMANEA 1343

Query: 810  RQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
             +  IQ     +      ++ +  + +    +A+  +G   A+ I+ A  +KPF S ED 
Sbjct: 1344 LERGIQFSMVDLYRSEASEWVIDGDTLIPPFSAVPSLGENVAKQIIVARQEKPFLSKEDL 1403

Query: 869  CSRVDSKKLNRRVL-ESLVFAGALDC 893
              R    +     L ++ V  G  D 
Sbjct: 1404 KKRGKVSQTIIDYLSQNSVLDGMPDE 1429



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 24/62 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L VH++ S ++       +     +  Q A+ + DT N+    E         ++ I 
Sbjct: 331 IELHVHTAMSAMDAVTDYGALAKLAKSWGQEALGVVDTANVQGFPEAVATGKKNDLKMIY 390

Query: 72  GC 73
           G 
Sbjct: 391 GM 392


>gi|326692542|ref|ZP_08229547.1| DNA polymerase III, alpha subunit [Leuconostoc argentinum KCTC 3773]
          Length = 1437

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 155/921 (16%), Positives = 299/921 (32%), Gaps = 195/921 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  MT              LLV  A G + L ELVSR  + +   +  RI  S L E   
Sbjct: 595  NDHMTEGDAWKHGRPVHATLLVKNAVGLKHLYELVSRSNI-EFFARLPRIPRSVL-EQHR 652

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-----KKLFGDRLYVNLQRHRGYDRYR 196
            EGL++ TG + G +           A ++   +     +        +        D+  
Sbjct: 653  EGLLVGTGDTGGDVIVTLIEKGYDAALEKAAYYDFIEIQPTANYAPMIESGLIADTDKLH 712

Query: 197  E--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
            +    +V +    + P+V T +  + + ED     +L+A       +        P+ + 
Sbjct: 713  DILRDMVAIGDELDKPVVVTGDIKYTNPEDRIYRQILIATQPGNPQN----RTTLPELHF 768

Query: 255  KNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            K   E++  ++ L E       ++NT  IA     +  + +   P  I    +       
Sbjct: 769  KTTQELLDDYAFLGEDLAKKVVIDNTHVIADSLEDVAPLKSGSYPPNIPTAGE------- 821

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL  + +   +       I         + R+D EL  I    F+ +++I    ++ + 
Sbjct: 822  -ELTRRTLETAKK-WYGDPI-----PDVIQARIDQELKAIIGNGFAPHYMIAQRLVEKSN 874

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRF---------------------------- 400
            K+   VG  RGS   S  A    IT+++P                               
Sbjct: 875  KDGYLVG-SRGSVGSSFVATMSGITEVNPFAPHYRSAHGDYFELADPKVYESGYDLPDKP 933

Query: 401  --------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                          ++ FE F+      +PD D++F  D +     Y++  +G   V + 
Sbjct: 934  DPNHPGEMLIGDGQNIPFETFMGFKGDKVPDIDLNFSGDYQPIAHNYMKVLFGEHNVYRA 993

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T  ++  K A   V +  +  + +  R                                
Sbjct: 994  GTIATVAEKTAFGYV-KGYERDHDKHYRGT------------------------------ 1022

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRSD---LPVTQFNMK 561
                +  ++Q + G+ R    H  GI+I  R   +    P+             T  +  
Sbjct: 1023 ---EVERLAQGITGVKRTTGQHPGGILIVPREYDVYDFTPVQYPADDQKSLWQTTHMDYH 1079

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------- 612
             I    L+K D LG    T+++   D        +D   IP +D     L          
Sbjct: 1080 SIHD-NLLKMDILGHDDPTMVRTLKDM-----SGIDPQSIPVNDPGVLSLFTSPKALGVT 1133

Query: 613  -----TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
                 +  GTLG+ +  ++ +R  LE  QP    +++ +  L     +            
Sbjct: 1134 PEQIFSKTGTLGLPEFGTNFVRGMLEETQPHNYSELLQISGLSHGTDVWLG--------- 1184

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
                 + + LI+        VI  ++++M       G+  ++A  +   + K        
Sbjct: 1185 -----NANELIENGTATIGTVIGTRDKIMTDLINW-GFPAADAFNVMEKVRKGKG----- 1233

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
                 I+   +  +        +        Y F ++HAAAY +++ + A+ K ++P  +
Sbjct: 1234 -----ITDEYQAQLRAAKIPEWYIQSMLKIKYMFPRAHAAAYVLMALRIAYFKVYFPTIY 1288

Query: 788  LAASMTLEMDNVE---------------------------------KIKKFCQDARQFNI 814
             A   ++  D  +                                  + +   +A +  I
Sbjct: 1289 YATYFSVRADQFDIVAMSRGKNATKEALKRLRALGNDATVGDKNLLTVMEMANEALERGI 1348

Query: 815  QIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                     +   ++ +  + +    +A+  +G   A+ I+ A  +KPF S ED   R  
Sbjct: 1349 TFSMVDLYKSEASEWVIDGDTLIPPFSAVPSLGDNVAKQIIVARQEKPFLSKEDLKKRGK 1408

Query: 874  SKKLNRRVL-ESLVFAGALDC 893
              +     L ++ V  G  D 
Sbjct: 1409 VSQTVIDYLTKNSVLDGMPDE 1429



 Score = 59.2 bits (142), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 24/62 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L VH++ S ++       +     +  Q A+ + DT N+    E         ++ I 
Sbjct: 331 IELHVHTNMSTMDSVTDYGAVAKLAKSWGQTALGVVDTANVQGFPEAVAAGKKNDLKMIY 390

Query: 72  GC 73
           G 
Sbjct: 391 GM 392


>gi|297588407|ref|ZP_06947050.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
 gi|297573780|gb|EFH92501.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
          Length = 1421

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 178/964 (18%), Positives = 324/964 (33%), Gaps = 212/964 (21%)

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNL-----KMTNQGKTPFPTVPSIVLLVST 105
            NLF+       A A G   I   +              K+ +          +  +    
Sbjct: 539  NLFNHHRACDDARATGEVFICMVKDLEKRGVKFDININKIDSDWSISKRESHTATIYAQN 598

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
              G + L +LV+   L     +   I  S L +   EGL++ +G   G + +A     S 
Sbjct: 599  LIGLKNLYKLVTASNLK-YFYREGGIPKSELNK-RREGLVIGSGNEDGELIKAILGFESD 656

Query: 166  VAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVVQLAYTHELPL 211
                      ++     ++ +Q    YD                   ++  L+  H  PL
Sbjct: 657  E------KLDEIISRYDFLEVQPPLYYDGVKSKRMSFNLKSCEELTRKLYDLSKKHNKPL 710

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            VA + + +  + DY   ++++      +  +K      P  + +   EM++ FS L + +
Sbjct: 711  VADSYAKYFEKTDYIFRNIILEGQPRKIYGEK-----FPTLFFRTTDEMMNEFSFLEKDV 765

Query: 272  ENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
               + I    + S +L    PI     +     + +  + ELR                 
Sbjct: 766  AEEILIDNTIKISEMLDDIKPI----PDGTFPPVIEGSDTELREMTYKKARSIYGDDL-- 819

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                 +    RL+ EL+ I    ++  ++I    ++ + ++   VG  RGS   S  A  
Sbjct: 820  ----PEIVESRLERELSSIISNGYAVLYIIAQKLVKKSNEDGYLVG-SRGSVGSSFVATM 874

Query: 390  LTITDIDPL-----------------------------------------RFSLLFERFL 408
              IT+++PL                                           ++ FE FL
Sbjct: 875  ADITEVNPLIPHYICENCKHSEFIHDENIGSGVDLEDKICPVCGQPLKKEGHNIPFEVFL 934

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
              D    PD D++F  + +  V +Y +  +G  +V +  T G++  K A   + +     
Sbjct: 935  GFDGDKEPDIDLNFAGEYQPTVHKYTEELFGEGKVFRAGTIGTISDKTAYGYIKKYF--- 991

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
                                          +   + +  +  L    + + G+ R +  H
Sbjct: 992  ----------------------------EDKNVYVNNSEIKYLQ---RGILGVKRTSGQH 1020

Query: 529  AAGIVIG--DRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
              G++I   D+ +    P+     DV SD+  T FN K I    ++K D LG    T+++
Sbjct: 1021 PGGVMIVPRDKDIEDFCPVQHPADDVNSDIITTHFNYKSI-SGRILKLDLLGHDVPTIIK 1079

Query: 584  KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLESSGMR 629
               D        VD   IP DD ET  + ++                TLGI +  ++ +R
Sbjct: 1080 MLSDMTG-----VDPLTIPMDDKETMSIFSSIDALHFEELIDGLDIGTLGIPEFGTNFVR 1134

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
              L    P    +++ +  L       N+ + N +            LI   + E +  I
Sbjct: 1135 GMLRDTTPKTFSELVRISGLSHGT---NVWLNNAQ-----------DLIRDGVVELKDTI 1180

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
              ++ +M                L +    KI E +  +K R +   + N +++    N 
Sbjct: 1181 CTRDDIMIYLINKG---------LEKKRSFKIMETV--RKNRLLDEDTLNYMTENGVPNW 1229

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS------------------ 791
            +    K  +Y F K+HA AY ++SY+ A+ K HYP  F +                    
Sbjct: 1230 YIESCKTIEYLFPKAHAVAYVMMSYRIAYFKVHYPEAFYSTFFTIKLQDYPGDVIVRGLS 1289

Query: 792  -------------------MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC-VDFKVG 831
                               MT +  N   + +  ++     I+     ++      FKV 
Sbjct: 1290 AIREEMQSLKDKYKESNSKMTAKDSNKYSVLEVAEEMYCRGIKQSRVDLHKSDKARFKVL 1349

Query: 832  DNRIY-YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            +         A++GV    +  I E      F S +DF  R    K+N+  LE L   G 
Sbjct: 1350 EKGFIQPPFNALEGVSDANSIAIFEEIQKGDFISKQDFTMRT---KVNKTALEILENHGV 1406

Query: 891  LDCF 894
            LD  
Sbjct: 1407 LDGL 1410



 Score = 68.5 bits (166), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 2/107 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L ++S  S L+G + L+     +     PA+ +TD + +    +        G++P+ 
Sbjct: 317 VELHMYSQMSQLDGFIDLDECCKTLKKWGHPALGLTDKSVVQGYPQLYDACSKNGLKPLF 376

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
           G +  I ++D+ ++             +V  + T  G     E ++ 
Sbjct: 377 GMEAKI-IEDDFRIITNPYDSMNLEEFVVFDIET-TGLSNATEKITE 421


>gi|126011012|ref|YP_001039762.1| hypothetical protein BcepF1.078 [Burkholderia ambifaria phage
           BcepF1]
 gi|119712588|gb|ABL96809.1| unknown [Burkholderia ambifaria phage BcepF1]
          Length = 956

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 203/837 (24%), Positives = 355/837 (42%), Gaps = 87/837 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L+V + YS  +    L++I+ ++     P   I D  + +  + F +      I P  G 
Sbjct: 6   LRVRTGYSFKKCYGHLDDIVARLGEVAAPFAGIVD-ASTWGHVRFDKAIRKTEITPGFGA 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++ I    +++            P   +L       +R+    +               L
Sbjct: 65  EIPIIGTGDME---------GFSPRAWILAKDT---RRMYNASTAAAQKGA--------L 104

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
           S  +     G+I   GG+   +      + S  A+   + +  +    L           
Sbjct: 105 SAFEFGALSGVIRFAGGALDAV----LADHSSQADHAPIDYIDVNPAFL----------- 149

Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE---AHDVLMAVAHSTVVSQKDRPRVTP 250
               ++ V+      +PLV T+ +      D     A +V  +V    + ++ +    + 
Sbjct: 150 -VHAARAVRWHRRSGIPLVLTSYNDMPRASDAHFAYATEVRDSVGMRHIATEDE--MWSQ 206

Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             ++  R E          A+ENT ++A     +    API    I  E D +       
Sbjct: 207 LQHVMTRLE-------FVTAIENTHDVAADLKGVALQKAPI----ISLEGDMLAW----- 250

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                  G   RLA+G I       +Y  RL  E   I    F  YFL VAD +++AK++
Sbjct: 251 ----CREGQAERLAKGHIK--EWTNEYESRLLMECEQIRSKNFDSYFLCVADLVRFAKRH 304

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            + VGP RGS AGS+  Y + IT++DPL + LLF+RF++  R   PD DIDF  ++R+ V
Sbjct: 305 -MLVGPARGSSAGSLVCYLMGITEVDPLPYGLLFQRFIDVSRSDFPDIDIDFNDEKREMV 363

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL-----CKLIPNDPAH 485
             Y+++KYG   VA++    +L+A + +  V +   + Y + D +          +D   
Sbjct: 364 FDYLRDKYGDASVARVGNVSTLKAASVIGMVSKKFGIGYIENDYIKNSLLSYAKGDDRYG 423

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                        ++     P   R++    ++E    H S HAAGI++ + P+S    +
Sbjct: 424 YELEDTFKQTEPGQDYAATHPGAARMMA---EVEIHPSHTSVHAAGILVCNDPVSDFCTV 480

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
             +      V   +    E   L+K D LGL+TL +++ +           +L  +   D
Sbjct: 481 EANG-----VASLDKDDAESLNLLKIDALGLRTLGIIESA-----NVMTPDELYALTPTD 530

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
              + +L     L IFQ E + +RQ  + +  D    I  + SL RPGP+   +   Y  
Sbjct: 531 QRVFDVLNEGKVLAIFQFEGNAVRQVTKRVHIDRFSKIDNITSLARPGPLGAGMDEPYIK 590

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722
           R  GKE +    P +   L +T G+++YQEQ+M I + + G+       +R+AMGK K  
Sbjct: 591 RTAGKEAVTFAFPELRKYLGDTFGILLYQEQIMAIVREIGGFDWPRVTEIRKAMGKSKGA 650

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
           E  DK  + F+ GA + GI+   A  +++ +  F  YGFNKSH+ AY++++Y T  +K  
Sbjct: 651 EYFDKHGDDFVKGAVERGINAEAARKLWKEMVTFGAYGFNKSHSVAYSLVTYWTLHLKRF 710

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
           + +EF AA +    D  + I    ++  Q  +Q           +++V + R+   +
Sbjct: 711 HRLEFAAACLRSAKDEQQTIA-ILRELVQEGVQYTALDPEYSTDNWRVANGRLVGGI 766


>gi|19548804|gb|AAL90799.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548806|gb|AAL90800.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548808|gb|AAL90801.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548810|gb|AAL90802.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548820|gb|AAL90807.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548824|gb|AAL90809.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548828|gb|AAL90811.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548834|gb|AAL90814.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548836|gb|AAL90815.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548838|gb|AAL90816.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548840|gb|AAL90817.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548842|gb|AAL90818.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548844|gb|AAL90819.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548846|gb|AAL90820.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548848|gb|AAL90821.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548854|gb|AAL90824.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548856|gb|AAL90825.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548860|gb|AAL90827.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548862|gb|AAL90828.1| polymerase III subunit alpha [Escherichia fergusonii]
          Length = 328

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 155/329 (47%), Positives = 225/329 (68%), Gaps = 13/329 (3%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
           +TLT++  +L+ + +R        +D++ IP DD +++ +L    T  +FQLES GM+  
Sbjct: 180 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 239

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKE 684
           ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E+I        H  + P+L+ 
Sbjct: 240 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 299

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
           T G+I+YQEQVMQIAQ+LSGY+L  AD+L
Sbjct: 300 TYGIILYQEQVMQIAQVLSGYTLGGADML 328


>gi|163791589|ref|ZP_02185990.1| DNA polymerase III, alpha subunit, Gram-positive type [Carnobacterium
            sp. AT7]
 gi|159873138|gb|EDP67241.1| DNA polymerase III, alpha subunit, Gram-positive type [Carnobacterium
            sp. AT7]
          Length = 1395

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 146/892 (16%), Positives = 290/892 (32%), Gaps = 198/892 (22%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A                + ++    +  K   P      ++ +T  G + L +L+S
Sbjct: 585  FLKEAREE-----HDIHFQDQLNEHTGEGDAYKRARP--FHATIIATTQTGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--- 174
               ++D   ++ R+  S L ++  EGLI+ T  S G +  A        A+ +   +   
Sbjct: 638  -SSMVDYFYRTARLPRSELIKL-REGLIIGTACSQGEVFEAMMQKGFDEAKNKAKFYDYI 695

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                K+++   +   L +           +V++     +P+VAT N  +L+ ED     +
Sbjct: 696  EVMPKEVYAPLIEQELVKDESDLEEIIRNLVKIGEDLNIPVVATGNVHYLNPEDSIYRKI 755

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFI 284
            L+        +        P+ + +  +EM+  FS L E       ++NT +I       
Sbjct: 756  LINSQGG---ANPLNRSELPEVHFRTTTEMLETFSFLGEETAQQIVVKNTNKIVDMVDDA 812

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            +    PI       + +      E+E+R  +                       +R++ E
Sbjct: 813  I---TPIKTDLYTPKIEG----SEDEIRQLSYDEAHRLYGN------PLPDIIEKRIEKE 859

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----- 399
            LN I    FS  +LI    +  +  +   VG  RGS   S  A    IT+++P+      
Sbjct: 860  LNSIIGNGFSVIYLISQKLVHKSMSDGYLVG-SRGSVGSSFVATMTGITEVNPMPPHYSC 918

Query: 400  ------------------------------------FSLLFERFLNPDRMSMPDFDIDFC 423
                                                  + FE FL      +PD D++F 
Sbjct: 919  PKCQYSEFFTDGSVGSGYDLPDKACPECGARLHKDGHDIPFETFLGFYGDKVPDIDLNFS 978

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D + +   Y +  +G E V +  T G++  + A   V                      
Sbjct: 979  GDYQSKAHNYTKELFGEEYVFRAGTIGTVADRTAFGYV---------------------- 1016

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQ 541
                  +    D+        +     +  +++   G+ R    H  GI++      +  
Sbjct: 1017 ------KGYERDNNL------NLRAAEIDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYD 1064

Query: 542  LVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
              P+        S+   T F+   I    ++K D LG    T+++   D        VD 
Sbjct: 1065 FTPIQFPADAQDSEWKTTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDL-----SGVDP 1118

Query: 599  SLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
              IP DD E   +               +  GTLGI +  +  +R  LE   P    +++
Sbjct: 1119 KTIPTDDPEVMKIFGGTEVLGVTPEQIQSKTGTLGIPEFGTRFVRGMLEETLPTTFAELL 1178

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
             +  L     +          N +E I      +  ++     +++Y    +    +  G
Sbjct: 1179 QISGLSHGTDVWLG-------NAEELIRVNDIPLSEVIGCRDDIMVY----LIHNGMEDG 1227

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
             +    + +R+  G              I    +  +        +        Y F K+
Sbjct: 1228 LAFKIMESVRKGKG--------------IPDDWQKAMRDENIPEWYIDSCLKIKYMFPKA 1273

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK--------------------- 803
            HAAAY +++ + A+ K H+P+ + AA  ++  D+ + +                      
Sbjct: 1274 HAAAYVLMALRVAYYKVHFPILYYAAYFSVRADDFDLVAMAKGKDSIKLKMKEITDKGLD 1333

Query: 804  ------------KFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAI 842
                        +   +  +   +     +  +   DF +  N +     A+
Sbjct: 1334 ASTKEKNLLTVLELTNEMVERGFEFKMVDLAKSDASDFVIEGNTLMAPFRAV 1385



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++   ++ +++++ A     A+AITD     S  +        GI+ + 
Sbjct: 340 VELHLHSNMSQMDATNTVTDLVNQAAKWGHKAVAITDHFGAQSFPDAFHAGQKNGIKILY 399


>gi|154484752|ref|ZP_02027200.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC 27560]
 gi|149734600|gb|EDM50517.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC 27560]
          Length = 1474

 Score =  389 bits (1000), Expect = e-105,   Method: Composition-based stats.
 Identities = 172/991 (17%), Positives = 324/991 (32%), Gaps = 206/991 (20%)

Query: 42   PAIAIT-DT------NNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFP 94
             A+ I  D       +   +AL F +       + I     ++D  +     ++      
Sbjct: 541  KALGIVLDHHHRAVDDAECTALIFLKLCKMLEGKGI----DNLDELNRQGKQSKNLIDKL 596

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                 ++LV    G   L +L+S+ ++     +  RI  S   E+ +EGLI+ +   +G 
Sbjct: 597  PAHHAIILVKNQVGRVNLYKLISKSHIETFANKRPRILKSDYLEL-SEGLIIGSACEAGE 655

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRGYDR------------YR 196
            + +A     SQ    RL  F   F       +   +        DR              
Sbjct: 656  LYQAILHGKSQQEIARLAEFYDYFEVQPIGNNEFMLKTGDPEIDDRKKFLVDSVEELQEV 715

Query: 197  ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKN 256
              +++ L        VAT +  FL  ED     ++    +    +    P       L+ 
Sbjct: 716  NKKIIDLGKKFNKMTVATCDVHFLDPEDEIYRRIIQC-GNGFKDADNQAPLY-----LRT 769

Query: 257  RSEMVSIFSDLPEALENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
              EM+  F  L   L   + I    R + +++  +PI P       D+     E  LRN 
Sbjct: 770  TDEMLKEFDYLDSDLAEEIVIKNPARINDMIENISPIHPDKCPPVLDN----SEENLRNI 825

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
                      +         +    RL+ ELN I    ++  +++    +  + ++   V
Sbjct: 826  CFEKAHDMYGEKL------PKIVEDRLEVELNSIIGNGYAVMYIMAQRLVWKSNEDGYLV 879

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLLFE----------------------------- 405
            G  RGS   S  A    IT+++PL                                    
Sbjct: 880  G-SRGSVGSSFAATMSGITEVNPLAPHYYCTECKSSFFEDEVTVPDEADKEAVKEIQDTI 938

Query: 406  ---RFLNPDRMSMPDFDIDFC--------------------------------QDRRDEV 430
               R      + +P     +C                                 + +   
Sbjct: 939  RQLREDGGVGLDLPPRKCPYCGKDMCRDGFEIPFETFLGFGGTKEPDIDLNFSGEYQSNA 998

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
              Y +  +G     +  T   L  K A   V    +  + Q+ R                
Sbjct: 999  HAYTEVMFGKGHTFRAGTIAGLAEKTAYGYVKNYYE-EHGQIKRTA-------------- 1043

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRD 548
                                +  IS+  +G+ R    H  GIVI  R   + +  P+ + 
Sbjct: 1044 -------------------EIDRISRGCQGIRRSTGQHPGGIVIVPRDKEIYEFTPIQKP 1084

Query: 549  VRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                  D+  T F    I+   L+K D LG    T++++          +     +P +D
Sbjct: 1085 ANDMTTDIITTHFEYHAIDA-NLLKLDILGHDDPTMIRRLEKLTNTNVNR----DVPIND 1139

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +   L T    LGI   +  G      G+     + +I ++   +P  I ++V  +   
Sbjct: 1140 PKVMSLFTGPEALGITSDDIDGCPTGSLGLPELGTDFVIQMLVDTKPTKISDLVNISGLS 1199

Query: 666  NGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKI 721
            +G +  + +   LI+         I  ++ +M       +    S    + +R+  G +I
Sbjct: 1200 HGTDVWLGNAQTLIEEGRCTISTAICTRDDIMVYLMHKGIEPQVSFQIMEHVRKGKGLQI 1259

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             ++    KE       +  + +    + +    K   Y F K+HAAAY +++ + AW K 
Sbjct: 1260 YKDKKSGKEI----NEEEVMHQHNVPDWYIGSCKKIKYMFPKAHAAAYIMMALRVAWYKV 1315

Query: 782  HYPVEFLAASMTLE---------MDNVEKIKKF--------------------------C 806
            + P+ + AA   +              EK++ +                           
Sbjct: 1316 YIPLAYYAAYFAIRAKAFNYETMCRGKEKLEYYMADLKRKKANHEIAKKDEDALGDMKVV 1375

Query: 807  QDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFD 863
            Q+      + MP  +      +F++ DN++  SL  I+G+G   A  ++EA A+   PF 
Sbjct: 1376 QEMYARGFEFMPIDIYKAKAHEFQIIDNKLMPSLDTIEGLGEKAADGLVEAVANQSGPFV 1435

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            S  +   +    KL++ V+E++   G L+  
Sbjct: 1436 SKNELREK---SKLSKTVIETMSSLGLLEGM 1463



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           + L  H+  S ++G      I+ +       AIAITD   + +  +   +
Sbjct: 313 IELHCHTKMSDMDGVSECKKIVRRAYEWGHKAIAITDHGVVQAFPDAWHE 362


>gi|19548852|gb|AAL90823.1| polymerase III subunit alpha [Escherichia coli]
          Length = 328

 Score =  389 bits (1000), Expect = e-105,   Method: Composition-based stats.
 Identities = 155/329 (47%), Positives = 225/329 (68%), Gaps = 13/329 (3%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
           +TLT++  +L+ + +R        +D++ IP DD +++ +L    T  +FQLES GM+  
Sbjct: 180 RTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 239

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKE 684
           ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E+I        H  + P+L+ 
Sbjct: 240 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 299

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
           T G+I+YQEQVMQIAQ+LSGY+L  AD+L
Sbjct: 300 TYGIILYQEQVMQIAQVLSGYTLGGADML 328


>gi|291563198|emb|CBL42014.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing
            bacterium SS3/4]
          Length = 1376

 Score =  389 bits (1000), Expect = e-105,   Method: Composition-based stats.
 Identities = 153/842 (18%), Positives = 268/842 (31%), Gaps = 180/842 (21%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
               +++L     G   L  LVS  +L     +  RI  S L +   EGLI+ +   +G +
Sbjct: 605  TYHVIILAKNDLGRVNLYRLVSWSHLK-YFSRRPRIPKSVLNQY-REGLIIGSACEAGEL 662

Query: 156  DRAFFFNSSQVAEKRLLTF------KKLFGDRLYV--NLQRHRGYDRY--RESQVVQLAY 205
             +A           +L+ F      + L  D   +       R  D       ++V L  
Sbjct: 663  YQAILRGVPDAELAKLVKFYDYLEIQPLGNDMFMLRDEKSTVRTVDDLMDINRKIVSLGE 722

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                P+ AT +  F+  +D     +LM+        +          +L+   EM++ F 
Sbjct: 723  QFNKPVCATCDVHFMDPDDAIYRKILMSGMGFKDADE------QAPLFLRTTEEMLAEFE 776

Query: 266  DLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
             L         + NT  IA  C  I  V     P  I+K         +  LRN      
Sbjct: 777  YLGSDKCYEVVVTNTRMIADMCEPIAPVRPDKCPPVIDKS--------DETLRNICYNRA 828

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                 +         +    RL+ EL+ I    F+  ++I    +  + ++   VG  RG
Sbjct: 829  HEMYGENL------PKIVVDRLERELHSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRG 881

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S  A    IT+++PL                                         
Sbjct: 882  SVGSSFVATMSGITEVNPLSPHYYCPNCHYYDFDSEEVKKYGGMAGCDMPDKVCPECGHP 941

Query: 400  -----FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                 F + FE FL       PD D++F  + +     Y +  +G  +  +  T G+L  
Sbjct: 942  MVKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSRAHDYTEVIFGKGQTFRAGTIGTLAD 1001

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V    +  + +  R C                                  +  I
Sbjct: 1002 KTAYGYVKNYFE-EHGERKRNC---------------------------------EINRI 1027

Query: 515  SQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLI 569
             Q   G+ R    H  GIV+      +    P+             T F+   I+   L+
Sbjct: 1028 VQGCVGVRRTTGQHPGGIVVLPLGEMIYSFTPVQHPANDMTTKTITTHFDYHSIDH-NLL 1086

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
            K D LG    T+++   D      V      IP D  E   L  +   LGI   +  G +
Sbjct: 1087 KLDILGHDDPTMIRMLQDLTGLDPV----KDIPLDSREVMSLFQSTDALGIKPEDIGGCK 1142

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGV 688
                G+     +  + ++   +P    ++V      +G +  + +   LI       Q  
Sbjct: 1143 LGALGVPEFGTDFAMQMLIDTKPKYFSDLVRIAGLAHGTDVWLGNAQTLIQEGKATIQTA 1202

Query: 689  IIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
            I  ++ +M          G + +  + +R+  G K + E +              ++K  
Sbjct: 1203 ICTRDDIMIYLIQQGLEEGLAFTIMEAVRKGKGLKPEWEEE--------------MTKHG 1248

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV------ 799
              + +    K   Y F K+HAAAY +++++ A+ K  YP+ + AA  ++           
Sbjct: 1249 VPDWYIWSCKKIKYMFPKAHAAAYVMMAWRIAYCKVFYPLAYYAAFFSIRASAFSYEIMC 1308

Query: 800  ---EKI------------------------KKFCQDARQFNIQIMPPSVNT-PCVDFKVG 831
               EK+                         +  Q+        +P  + T     F+V 
Sbjct: 1309 LGREKLEYHLADYKKRADTLSKKEQDTLRDMRIVQEMYARGFDFLPLDIYTAKARHFQVV 1368

Query: 832  DN 833
              
Sbjct: 1369 GG 1370



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           V L  H+  S ++G   + +++ +      PA+AITD   +  A   +  A   G
Sbjct: 329 VELHCHTKMSDMDGVSEVKDLVKRAKKWGMPALAITDHGCV-QAFPDANHALDKG 382


>gi|19548826|gb|AAL90810.1| polymerase III subunit alpha [Escherichia coli]
          Length = 328

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 155/329 (47%), Positives = 225/329 (68%), Gaps = 13/329 (3%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTQITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
           +TLT++  +L+ + +R        +D++ IP DD +++ +L    T  +FQLES GM+  
Sbjct: 180 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 239

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKE 684
           ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E+I        H  + P+L+ 
Sbjct: 240 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 299

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
           T G+I+YQEQVMQIAQ+LSGY+L  AD+L
Sbjct: 300 TYGIILYQEQVMQIAQVLSGYTLGGADML 328


>gi|296110428|ref|YP_003620809.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc
            kimchii IMSNU 11154]
 gi|295831959|gb|ADG39840.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc
            kimchii IMSNU 11154]
          Length = 1437

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 165/921 (17%), Positives = 307/921 (33%), Gaps = 195/921 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  MT+             LLV  A G + L +LVSR  + D   +  RI  S L +   
Sbjct: 595  NDYMTDGDAWKHGRPVHATLLVQNAVGLKNLYKLVSRSNI-DFFARVPRIPRSILNQY-R 652

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-------FGDRLYVNLQRHRGYDR 194
            EGLI+ TG +SG +         + A K+   +  +       +   +   L  +     
Sbjct: 653  EGLIIGTGDTSGDVIMTLIEKGREEALKKAKYYDYIEIQPTANYAPMIESELVANETKLH 712

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                ++V +  T + P+V T +  + + ED    D+L+A       +        P+ Y 
Sbjct: 713  DILKEMVSIGETLDKPVVVTGDVKYTNPEDKIYRDILIATQPGNPQN----RTALPELYF 768

Query: 255  KNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +    +++ FS +         ++NT  +A     I  + +   P  I    D++     
Sbjct: 769  RTTQALLTDFSFMGNDVAKKIVIDNTHIVADMLEAITPLKSGSYPPNIPSAGDELTS--- 825

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
               R  A A    +     +         + R+D EL  I    F+ +++I    ++ + 
Sbjct: 826  ---RTLATA---KKWYGDPL-----PSVIQSRIDQELQAIIGNGFAPHYMISQRLVEKSN 874

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRF---------------------------- 400
            K+   VG  RGS   S  A    IT+++P                               
Sbjct: 875  KDGYLVG-SRGSVGSSFVATMSGITEVNPFAPHYRSAHGDYFELADPKIYESGYDLPDKA 933

Query: 401  --------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                          ++ FE F+      +PD D++F  D +     Y++  +G   V + 
Sbjct: 934  DPNHPGEMLIGDGQNIPFETFMGFKGDKVPDIDLNFSGDYQPIAHNYMKVLFGEHNVYRA 993

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T  ++  K A   V +  +  + +  R                                
Sbjct: 994  GTIATVAEKTAFGYV-KGYERDHEKQYRGA------------------------------ 1022

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRSD---LPVTQFNMK 561
             V+RL   +Q + G+ R    H  GI+I  R   +    P+             T  +  
Sbjct: 1023 EVERL---AQGVTGVKRTTGQHPGGILIVPREYEVYDFTPVQYPADDQKSLWQTTHMDYH 1079

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------- 612
             I    L+K D LG    T+++   D        +D   IP +D     L          
Sbjct: 1080 AIHD-NLLKMDILGHDDPTMVRTLKDM-----SGIDPQSIPANDPGVLSLFTSPKALGVT 1133

Query: 613  -----TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
                 +  GTLG+ +  +S +R  LE  QP    +++ +  L     +            
Sbjct: 1134 EDQIFSKTGTLGLPEFGTSFVRGMLEETQPHTYSELLQISGLSHGTDVWLG--------- 1184

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
                 + + LI+        VI  ++++M       G+  ++A  +   + K        
Sbjct: 1185 -----NANELIENGTATIGTVIGTRDKIMTDLINW-GFPAADAFNVMEKVRKGKG----- 1233

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
                 I+ A +  + +      +        Y F ++HAAAY +++ + A+ K ++P  +
Sbjct: 1234 -----ITDAYQAQLREAKIPEWYIQSMLKIKYMFPRAHAAAYVLMALRIAYFKVYFPTIY 1288

Query: 788  LAASMTLEMDNVEKIK---------------------------------KFCQDARQFNI 814
             A   ++  D  + +                                  +   +A +  I
Sbjct: 1289 YATYFSVRADQFDIVAMSRGKNATKEAMKKIRTLGNDATVGDKNLLTVLEMANEALERGI 1348

Query: 815  QIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                     +   ++ +    +    +A+  +G   A+ I+ A  DKPF S ED   R  
Sbjct: 1349 TFSMVDLYKSEASEWVIDGETLIPPFSAVPSLGDNVAKQIIVARQDKPFLSKEDLKKRGK 1408

Query: 874  SKKLNRRVL-ESLVFAGALDC 893
              +     L  + V  G  D 
Sbjct: 1409 VSQTVIEYLSRNSVLDGMPDE 1429



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L VHS+ S ++   +   +     +  Q A+A+ DT N+    E         ++ I 
Sbjct: 331 IELHVHSTMSTMDAVTNYAAVAQLAKSWGQEALAVVDTANVQGFPEAVAAGAKNDLKMIY 390

Query: 72  GC 73
           G 
Sbjct: 391 GM 392


>gi|293402030|ref|ZP_06646169.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304422|gb|EFE45672.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 1443

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 157/921 (17%), Positives = 310/921 (33%), Gaps = 195/921 (21%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQS---------VRICLSWLQEIGTEG-LIML 147
             + +L     G + L EL++  +                  RI    +++    G L++ 
Sbjct: 585  HVTILAKNMAGLKELFELITLSHTEYLSYNRKSTANVVAEPRIIRKEIEKRRVNGNLLIG 644

Query: 148  TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD---RLYVNLQRHRGYDRYRESQV---- 200
            +   +G +       S +   + +  +  +           ++R+   D  R  ++    
Sbjct: 645  SSCVNGEVFDMAQTRSEKELAEVMQFYDYIEIQPLANYRFLVERNSIVDEARLKEILLSI 704

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLM---AVAHST-----VVSQKDRPRVTPDH 252
            V+ A      +VAT+++ ++   +    D+ +   A+            ++ R   +PD 
Sbjct: 705  VEKAEEMGKIIVATSDAHYVHPNEKLIRDIYINSQAIGGMRHALYIYNQERRRKFKSPDQ 764

Query: 253  YLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +L+   EM+  ++ L +       ++NT  IA +   I  V   + P  IE         
Sbjct: 765  HLRTTDEMLKEYAWLGQQRAYDMVIKNTKAIADQIEVIRPVKDALYPPDIEGS------- 817

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + +LR         +                +RL+ EL+ I    +   + I    ++ 
Sbjct: 818  -DQKLREICFENAHKKYGP------VLPDIVEKRLNRELDSIIGAGYYVVYYISHLLVKK 870

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------------------- 398
            +  +   VG  RGS   S  A    IT+++PL                            
Sbjct: 871  SLDDGYLVG-SRGSVGSSFVATMSEITEVNPLAPHYVCPKCHYVKFFTDGSVLNGYDLPD 929

Query: 399  -------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL  +   +PD D++F  D +     Y +  +G + V +
Sbjct: 930  IECPNCGETIRGDGHDIPFETFLGFEGDKVPDIDLNFSGDYQPNAHAYTKEVFGEDHVYR 989

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V                            +   ++     +    
Sbjct: 990  AGTIGTVAEKTAFGYV----------------------------KGYEEEMGIEGSMRN- 1020

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMY---RDVRSDLPVTQFNM 560
                ++L +++  EG+ R    H  GIV+    L      P+     D  ++   T F+ 
Sbjct: 1021 ---AQILRLAKGCEGVKRTTGQHPGGIVVVPLDLDVHDFTPVQYPANDPYAEWKTTHFDF 1077

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
              I    ++KFD LG    T ++       +R   +D++ IP +D ET  + +    L I
Sbjct: 1078 HQIHD-NILKFDILGHVDPTAMKML-----ERMSGIDVTTIPMNDPETMSIFSKVDALKI 1131

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLID 679
               +++       G+       +  ++ L RP   D ++  +   +G +  + +   LID
Sbjct: 1132 DTSKNT-EETGAAGLPEFGTPFVRGILELTRPTTFDELLKISGLSHGTDVWLGNAKDLID 1190

Query: 680  PMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
              +   + VI  ++ +M       L    + +  + +R+  G K         + +I   
Sbjct: 1191 DGICTLKSVIGCRDDIMVYLLHKGLRPKLAFTIMESVRKGKGLK---------DEWIPEM 1241

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             +NG+      +  ++      Y F K+HA AY +++ + AW K H P  +     ++  
Sbjct: 1242 KENGVEDWYIESCKKI-----KYMFPKAHAVAYVMMAIRIAWFKVHEPQYYYCMFFSIRC 1296

Query: 797  DNVE---------KIKKFCQ------------------------------DARQFNIQIM 817
            D  +          I+K  Q                              +         
Sbjct: 1297 DAYDIETMIKGEQSIRKKMQEIDFKLHDNAQKKDVTKKDKDTYNTLELALEMTLRGYYFA 1356

Query: 818  PPSVNTPC-VDFKVGDNRI---YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
               +      DF V   R         +I G+G + A  ++EA  +  F S ED   R  
Sbjct: 1357 NIDLMRSASRDFIVDPERPNYIIPPFTSIDGLGESVADTVVEARKNGAFLSKEDLQRRTA 1416

Query: 874  SKKLNRRVLESLVFAGALDCF 894
                  + LES+   G L+  
Sbjct: 1417 LSGTLIKKLESM---GVLEGL 1434



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           V L VH+  S ++G   ++  +         AIA+TD 
Sbjct: 304 VELHVHTKLSEMDGVCDISEYIKTANEWGWDAIALTDH 341


>gi|157310965|ref|YP_001468961.1| putative DNA polymerase III alpha subunit [Corynebacterium phage
           P1201]
 gi|95832113|gb|ABF57513.1| putative DNA polymerase III alpha subunit [Corynebacterium phage
           P1201]
          Length = 652

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 167/647 (25%), Positives = 284/647 (43%), Gaps = 69/647 (10%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           +K   FV L  H+S+S  +G  S    + ++      A+A+T+   + S ++  Q A  A
Sbjct: 27  KKDMKFVSLHSHTSFSSGDGHGSPAEHVARVKELGMSALALTEHGTVSSHVQLEQAALKA 86

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-- 123
           GI+PI G +  +      +  +Q            +L    EGY+ L  +V+  Y     
Sbjct: 87  GIKPIFGVEAYVAEPGEKRKFHQ-----------TILAMNEEGYRNLSRMVTESYKKKED 135

Query: 124 --QGKQSVRICLS-WLQEIGTEGLIMLTGGSSGPID--------------------RAFF 160
                    I     L   GTEGL++L+G +   +                     +   
Sbjct: 136 KSGFYHYPTINTETLLNRHGTEGLVILSGCADSWLSCTLAGGKSQGLRVREDIGPAQYSD 195

Query: 161 FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR--YRESQVVQLAYTHELPLVATNNSL 218
            +  Q+  + +  F  ++GDR Y+ +Q    YDR  +   Q+  L+   ++PLVAT ++ 
Sbjct: 196 DDRLQMGAELVERFLDVYGDRYYLEVQPFSNYDRTVFLNQQIESLSKELDVPLVATADAH 255

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLP-------EA 270
           +   ED+E   +  A+     + + DR     P  Y ++  EM               +A
Sbjct: 256 YPYPEDWEIQKLSNAIKWKIPMDKMDRDYAADPCTYPESDREMAIRLIKAGVSKDGAVKA 315

Query: 271 LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
           + N+  +A R +  L   + +       E +         L+     G++ R       +
Sbjct: 316 INNSSRVADRLNVTLPKTSQVRF----SESNGTASHAAYLLKEAIKEGVKFRAETNERFR 371

Query: 331 ---GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                  ++Y  R+  EL VI    FS YFLI    + WAK N I VGPGRGS AGS+  
Sbjct: 372 EDFRKRKEEYTARIKKELAVIIPKDFSDYFLINQQILGWAKDNGIAVGPGRGSAAGSLVC 431

Query: 388 YALTITDIDPLRF-SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
           Y L I++++P+ F  +LFERFL+P R   PD D D+  DRR+EV  + ++ YG + V  I
Sbjct: 432 YLLRISEVNPMEFPQMLFERFLDPGREDPPDVDTDYADDRRNEVFEFARSIYGVDNVGNI 491

Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADD----SRFREA 501
             F   + K A++D  +A+  P  + +  C+ I   P   P       D        ++ 
Sbjct: 492 GNFSRFRGKTAIKDTAKAIGAPPWEAEEFCEFIVEAPYGDPREFDTAEDTAIAFPEAKKI 551

Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ---F 558
               P     LE++ +LEG  +    HAAG+VI + P+S    +Y   +++  +T+   +
Sbjct: 552 IDNHPG----LELAFRLEGDQKTLGVHAAGMVISNSPISDTCAIYEREKTNGDMTEVLAY 607

Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
           + +     G++K D LGLKT+T++  ++  + + G      + P DD
Sbjct: 608 DKRDSAYLGMLKLDCLGLKTMTIISDTIKSVNEGGKS---DIKPTDD 651


>gi|329769168|ref|ZP_08260588.1| DNA polymerase III [Gemella sanguinis M325]
 gi|328839387|gb|EGF88965.1| DNA polymerase III [Gemella sanguinis M325]
          Length = 1449

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 165/947 (17%), Positives = 322/947 (34%), Gaps = 191/947 (20%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++   +    GI+       +ID + +LK+ ++    FP      +LV  A+G + L  +
Sbjct: 587  VKMLDQLYKLGIE----YHNEIDEKIDLKLAHKRSRTFPCS----ILVKNAKGLKDLFRI 638

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS             I  S L++   + L++ +G S   +      +     E  +  + 
Sbjct: 639  VSYSCTDYLSSGKPTIPRSLLEQY-RKDLLIGSGNSENEVFEELLNSKEDKVEGIIDFYD 697

Query: 176  KL---FGDRLYVNLQRHRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAH 228
             +     +  +  ++  R  D     ++++    +A   +  +VAT +  +L E  +   
Sbjct: 698  YIEIQPKNHYHSFIRSERITDEAELEELLKKLIDIAKKKDKIVVATGDCYYLDEYQHVYR 757

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCS 282
             +L      TV S      + P        EM++ FS L E       ++NT +I+    
Sbjct: 758  QILRL----TVKSNPGARDIKPMATFLTTEEMLNEFSFLDEKLREEIVIDNTHKISDLIE 813

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
             ++ +   +    IE   D        E+R+ + +                 +   +RL+
Sbjct: 814  LVVPLKNKLYTPNIEGAAD--------EVRDLSYSMAHKIYGDKL------PEIVEKRLE 859

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF-- 400
             EL  I    FS  +LI    ++ +  +   VG  RGS   S+ A  + IT+++PL    
Sbjct: 860  KELASIIGNGFSVVYLISHKLVKKSLDDGYLVG-SRGSVGSSLVATMMEITEVNPLAPHY 918

Query: 401  ---------------------------------------SLLFERFLNPDRMSMPDFDID 421
                                                    + FE FL  +   +PD D++
Sbjct: 919  VCPKCKHSEFFLNAEYASGFDLPNKNCPHCDVKMIKDGQDIPFETFLGFNGDKVPDIDLN 978

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  + +     + +  +G + V +  T  ++  K A                        
Sbjct: 979  FSGEYQATAHNFTKEIFGEDYVYRAGTISTVAEKTAYSFT-------------------- 1018

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEI---SQKLEGLYRHASTHAAGIVI--GD 536
                             R+    +    R ++I   +   EG  R    H  GI++   D
Sbjct: 1019 -----------------RDYYEKNEIEKRSIDIERIASGCEGSKRTTGQHPGGILVVPND 1061

Query: 537  RPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
              +    P       +      T F+   I    ++KFD LG    T+++K  D      
Sbjct: 1062 MDIFDFTPYQYPADDETSPWRTTHFDFHSIHD-NILKFDILGHDDPTMIRKLQDL----- 1115

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              ++   I   D E   + +T   LG+ + +         G+       +I ++   +P 
Sbjct: 1116 SGIEPKTIDVSDPEVMGIFSTVEALGVTREQVDSA-SGTFGIPEFGTNFVIQMLDDTKPT 1174

Query: 654  PIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSE 709
                +V  +   +G +  + +   LI     E + VI  ++ +M          G S   
Sbjct: 1175 TYSELVQISGLSHGTDVWLGNAQELIKNGTCELKDVIGCRDDIMVYLIHAGLEEGLSFKI 1234

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             + +R+  G           E F      N + +    +  ++      Y F K+HA AY
Sbjct: 1235 MESVRKGKG---------LTEDFEKAMRDNDVPEWYIDSCKKI-----KYMFPKAHACAY 1280

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIK------------- 803
             +++ + AW K H P+ +  A  ++   + +             KI+             
Sbjct: 1281 VLMALRIAWFKVHQPLTYYCAYYSVRASDFDIITVVKGEKSLKAKIQEIKTKDKNEVTAK 1340

Query: 804  --------KFCQDARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
                    +   +  +         +      D+ +  N +    + + G+G   A  I+
Sbjct: 1341 DKDALVSYEIANEMLERGFAFSKVDLEKSESHDYIIDGNTLIPPFSIVPGLGDNVANKIV 1400

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +A  +KPF S+EDF  R     ++  V+E L   G L      + QL
Sbjct: 1401 QARKEKPFLSIEDFSKR---GSVSSTVVEYLREMGTLKGL-PEKAQL 1443



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 37/94 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H+  S LEG  S  + L +  +    AIA TDT  + +  E    +    ++PI 
Sbjct: 343 IELNTHTKMSQLEGVSSAKDYLARAESWGHEAIAFTDTYGVQAYPEICLSSKGKELKPIY 402

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G    I        TN+ K        +V  V T
Sbjct: 403 GLNAFIMDDSITATTNKKKLRLKDATYVVFDVET 436


>gi|83319984|ref|YP_424323.1| DNA polymerase III, alpha subunit [Mycoplasma capricolum subsp.
            capricolum ATCC 27343]
 gi|83283870|gb|ABC01802.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            capricolum subsp. capricolum ATCC 27343]
          Length = 1479

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 166/923 (17%), Positives = 317/923 (34%), Gaps = 204/923 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG-TEGLIMLTGGSSGPID 156
               +LV    G + L +LV++ +  +    S +I  S L E+     L+  +   +  I 
Sbjct: 631  HTNILVKNQTGLKELYKLVTKSHTTN-FYSSPKIFKSDLIEVKKNNNLLFGSSCVNSEIF 689

Query: 157  RAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYD----RYRESQVVQLAYTHELP 210
                 ++ +  ++ +  +   ++    +Y NL ++   D    +   + ++ +A      
Sbjct: 690  ELARTSTLENLKQAISFYDYIEIQPISVYKNLLQNDSLDLDQLKKIITNIISIARQENKL 749

Query: 211  LVATNNSLFLSEEDYEAHDV------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
            +VA+++  + + E  +  +V      L  + H  +    ++ +  PD YL+  +EM+  F
Sbjct: 750  IVASSDCHYTNPELKQIREVYINAKGLGGIRH-PLFDFNNKVKDYPDQYLRTTNEMLEEF 808

Query: 265  SDLPEA---LENTVEIARRCSFILQVHA-PILPRFIEKECDDIQKEEENELRNKAVAGLE 320
            S L +     E  V  + + + ++ V+  PI       +  ++    + +LR+K     +
Sbjct: 809  SWLEDENLIYEIVVINSNKINEMIDVNVIPIKDGLFTPKIANV----DEKLRDKCYQTAK 864

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                +             +RL+ EL  I +  F+  + I    ++ +  +   VG  RGS
Sbjct: 865  QMYGENL------PDIVEKRLEKELGSITKHGFAIVYWISHLLVKQSYDDGYLVG-SRGS 917

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S  A    IT+++PL+                                         
Sbjct: 918  VGSSFVATMAQITEVNPLKAHYRCLNCKYSDFDTDPTYKCGYDLPTKKCPNCNEKLIGDG 977

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL  D   +PD D++F  + +++   + +  +G   V +  T  ++  K A  
Sbjct: 978  HDIPFETFLGFDGDKVPDIDLNFSGEYQNQAHNFTKKMFGENNVFRAGTISTVAEKTAFG 1037

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V       + +  R   L                           P    +  +++  +
Sbjct: 1038 YVKTY----FEETKRDASL---------------------------PRKTEINRLAKLAQ 1066

Query: 520  GLYRHASTHAAGIVIGDR--PLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H  GI+I      +    P+     D+ S    T F+   I    L+K D L
Sbjct: 1067 GVKRTTGQHPGGIIILPNEYEIEDFTPVNYPADDLSSTWKTTHFDFHSIHD-NLLKMDIL 1125

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT---------------KGTLG 619
            G    T L+   D        +D   IP DD   Y L ++                G +G
Sbjct: 1126 GHDDPTALRMLRDL-----TNIDPITIPTDDKNVYSLFSSLQALNLTSDKINDEITGAIG 1180

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            I +  +  +R  L+  +P    D++ +  L       ++ + N R            LI 
Sbjct: 1181 IPEFGTGFVRNMLKETKPKTFADLVQISGLSHGT---DVWLGNAR-----------DLIK 1226

Query: 680  PMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
                    VI  ++ +M     +      +    + +R+  G K KE +D  K       
Sbjct: 1227 DNKANISTVIGCRDDIMVYLINMGLESSLAFMIMESVRKGKGLK-KEWIDIMK------- 1278

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             K+ I      +  ++      Y F K+HA AY +++Y+ AW K +YP E+ A  ++ + 
Sbjct: 1279 -KHNIPDWYIDSCLKI-----KYMFPKAHATAYVLMAYRIAWYKIYYPTEYYATYLSTKA 1332

Query: 797  D--------------------------NVEKIKKF----------CQDARQFNIQIMPPS 820
            D                          N EK+ K             +    NI+     
Sbjct: 1333 DVFDLKTALGGYEAVLLKLKSQQQKVKNGEKLSKKEEDLEVVYEVLLEMFARNIKFSNID 1392

Query: 821  VNTP-CVDFKVGDNRI-----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                    FKV                I  +G   A  I+ A   KP  S+ D  +R  +
Sbjct: 1393 FEKSEATKFKVDILEDNTKIIIPPFNVIDSLGEAVALSIINARNTKPITSVNDLKNRTQT 1452

Query: 875  KKLNRRVLESLVFAGALDCFGYS 897
             +   ++ E       LD     
Sbjct: 1453 TQTQIKIFEEF---NILDSLSVD 1472



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           V L  H+  S+++G     + L+ I++    AIA TD  N+ +  +  +   +   + I
Sbjct: 338 VELHAHTKMSVMDGVSDPTDYLELISSWNHKAIAFTDHTNVQAFPDIYKALNSVNKKRI 396


>gi|19548830|gb|AAL90812.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548832|gb|AAL90813.1| polymerase III subunit alpha [Escherichia coli]
          Length = 327

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 154/328 (46%), Positives = 224/328 (68%), Gaps = 13/328 (3%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
           +TLT++  +L+ + +R        +D++ IP DD +++ +L    T  +FQLES GM+  
Sbjct: 180 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 239

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKE 684
           ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E+I        H  + P+L+ 
Sbjct: 240 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 299

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           T G+I+YQEQVMQIAQ+LSGY+L  AD+
Sbjct: 300 TYGIILYQEQVMQIAQVLSGYTLGGADM 327


>gi|315282169|ref|ZP_07870636.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            marthii FSL S4-120]
 gi|313614186|gb|EFR87863.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            marthii FSL S4-120]
          Length = 1367

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/838 (18%), Positives = 275/838 (32%), Gaps = 166/838 (19%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            I+                   +G       P    +   TA G + L +L++   + +  
Sbjct: 587  IKDAKEMHDIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYF 645

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-------KKLF 178
             +  RI  S L+++  EGLI+ T  S G +  A      Q AEK    +       K ++
Sbjct: 646  YRVPRIPRSQLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVY 704

Query: 179  GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               +   L R           +V++      P+VAT N  +    D     +L+      
Sbjct: 705  APLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILIHSQGG- 763

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFI 296
              +        PD + +   EM+  F+ L E  A E  V         ++   PI     
Sbjct: 764  --ANPLNRAELPDVHFRTTDEMLKEFAFLGEEKAKEIVVTNPNVVVDWMEDLKPIKDELY 821

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              + D      E+E+R+ + A       +         +    RL+ EL  I    F+  
Sbjct: 822  TPKIDGA----EDEVRDMSYAMAHQLYGENL------PEIVEARLEKELKSIIGHGFAVI 871

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL------------- 403
            +LI    ++ +  +   VG  RGS   S  A    IT+++PL    L             
Sbjct: 872  YLISHKLVKKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDG 930

Query: 404  ----------------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                        FE FL      +PD D++F  D +     Y +
Sbjct: 931  SIGSGFDLPDKDCPHCGTAYRKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTK 990

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G + V +  T G++  K A   V R  +   +   R                     
Sbjct: 991  EIFGEDYVFRAGTIGTVAEKTAFGYV-RNYERDMNMTIRGA------------------- 1030

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVR 550
                        +DRL+       G+ R    H  GI++      +    P+        
Sbjct: 1031 -----------EIDRLVA---GCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATD 1076

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
            S+   T F+   I    ++K D LG    T ++   D        +D   IP DD +   
Sbjct: 1077 SEWKTTHFDFHSIHD-NVLKLDILGHDDPTAIRMLQDL-----SGIDPKTIPTDDPDVMK 1130

Query: 611  LL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            L               +  GTLGI +  +  +RQ LE  +P    +++ +  L     + 
Sbjct: 1131 LFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHGTDVW 1190

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVL 713
                            +   LI     E   VI  ++ +M       L S  +    + +
Sbjct: 1191 LG--------------NAEELIKNKTCELPDVIGCRDDIMVFLIYQGLESSLAFKIMESV 1236

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+   K + +EM++             +        +    K   Y F K+HAAAY +++
Sbjct: 1237 RKG--KGLTDEMEEA------------MMANKVPLWYIESCKKIKYMFPKAHAAAYVLMA 1282

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPSVN 822
             + A+ K H+P+ F A   T+  D+ +          +K   ++     ++      N
Sbjct: 1283 VRIAYFKVHHPLFFYATYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGLEASTKEKN 1340



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++ +  + A     AIAITD +   S  E        G++ I 
Sbjct: 341 AELHLHSPMSQMDATSSVDALFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 400


>gi|317056777|ref|YP_004105244.1| DNA polymerase III subunit alpha [Ruminococcus albus 7]
 gi|315449046|gb|ADU22610.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7]
          Length = 1500

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 173/927 (18%), Positives = 316/927 (34%), Gaps = 199/927 (21%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
             V   ++LV    G + L +L+S   L    K+  RI  S L ++  EGLI+ +    G 
Sbjct: 641  DVYHQIILVRNNIGLKNLYKLISDSNLK-YFKRRPRIPKSELTKL-REGLIVGSACERGE 698

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFG-----DRLYVNLQRHRGYDRYR--------ESQVV 201
            + +A+  N      K++  F          + +++       YDR +           +V
Sbjct: 699  VIQAYLENKPYEYIKQIAAFYDYLEIQPDGNNMFMLTAEKPPYDRIKTVEDVKDINRFIV 758

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +L     +P+ AT +  FL++ED +   ++ A    +              YLK+ ++M+
Sbjct: 759  KLGEDLGIPVCATGDVHFLNKEDAKFRAIIQASMGFSDCDN------QAPLYLKSTTQML 812

Query: 262  SIFSDLPE------ALENTVEIARRCSFILQ-VHAPILPRFIEKECDDIQ---KEEENEL 311
               S L E       + NT  +A      LQ         FIE    ++Q     +  EL
Sbjct: 813  EELSYLGEDKAFEVVVTNTNNVADMIDADLQAFPVGTYTPFIEGAVYELQIICWRKACEL 872

Query: 312  RNKAVAG-LEVRLAQGAIAKGYHAQDYR----QRLDFELNVIARMKFSGYFLIVADFIQW 366
                    +EV   +      Y  +       +RL  EL+ I +  FS  ++I    + +
Sbjct: 873  YGDCDPMSIEVPEGEDVDVSAYFEEHVHPLVFKRLKRELDSIIKHGFSVLYMISQKLVAY 932

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            + +    VG  RGS   S  A    I++++PL                            
Sbjct: 933  SNECGYQVG-SRGSVGSSFVASMSGISEVNPLEPHYICRKCHYSEFFENGEYGSGFDLPP 991

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL  D    PD D++F  D + +V +Y +  +G + V +
Sbjct: 992  KDCPNCGIPMHRDGHKIPFETFLGFDGDKAPDIDLNFSGDCQGKVHKYTEELFGQDHVFK 1051

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V + L       +                                
Sbjct: 1052 AGTIGTVADKTAYGYVRKYLDERGKTANA------------------------------- 1080

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVR---SDLPVTQFNM 560
                 +  +      + R  S H  G+V+      +    P+        SD+  T F+ 
Sbjct: 1081 ---AEIQRLVNGCVDVKRTTSQHPGGMVVIPGDYEVYDFTPVQHPADKVDSDMVTTHFDF 1137

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-------- 612
              +    ++K D LG    T+ +   DF       ++++  P  D   Y L         
Sbjct: 1138 HSLHDT-ILKLDELGHDVPTMYKYLEDF-----THMNINDCPMSDPAVYSLFTSPDSLGV 1191

Query: 613  ------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
                     GTLGI ++ +  +R  L   +P    D++ +  L     +          N
Sbjct: 1192 TAEDIKCETGTLGIPEMGTPFVRGMLLESKPKNFSDLLQISGLSHGTDVWLG-------N 1244

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEM 725
             +E I +    I  ++     +++Y    +    L    +    ++ R+    K+  EEM
Sbjct: 1245 AQELIKNGTCDISNVIGTRDSIMVY----LLEHHLEPKLAFKIMEITRKGKAPKLLTEEM 1300

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             +           + + +    +  ++      Y F K+HAAAY   + +  W K H P+
Sbjct: 1301 KQ-------DMRAHDVPEWYIDSCLKI-----KYMFPKAHAAAYVTAAIRLCWFKVHEPL 1348

Query: 786  EFLAASMTLEMDNVEK----------------------------------IKKFCQDARQ 811
             F A   T+  ++ +                                   +     +   
Sbjct: 1349 AFYATYFTVRGEDFDAETTLKGIYMVRDKIDRLNNMSKDERSGKDSGVLDMLMLTNEMMS 1408

Query: 812  FNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
               + +P  +N      +++ D +I     AI GVG   A  I E +    F S+E+F  
Sbjct: 1409 RGYEFLPIDINKSHAYIYEIEDGKIRLPFVAINGVGLNAALAIYEKAKKNDFISIEEFQM 1468

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYS 897
               +  +++ V+E+L   GA      S
Sbjct: 1469 ---NSGISKTVIEALENIGAFGDLPKS 1492



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           V L  H++ S+++   +   ++ K A     A+AITD   +        K 
Sbjct: 359 VELHCHTNMSMMDALAAPEKLVAKAAGWGHKALAITDHGVVQGFPAAGTKC 409


>gi|213691703|ref|YP_002322289.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|322691507|ref|YP_004221077.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|213523164|gb|ACJ51911.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320456363|dbj|BAJ66985.1| putative DNA polymerase III alpha subunit [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|320457794|dbj|BAJ68415.1| putative DNA polymerase III alpha subunit [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 878

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 151/668 (22%), Positives = 272/668 (40%), Gaps = 75/668 (11%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FV+L VHS YSL +G  +++ ++ +     QPAI +TD  ++   +EF +     GI+P
Sbjct: 20  DFVNLHVHSDYSLADGVSTVSELMSEAQRLGQPAIGLTDHGSVGGLMEFWKAGRQRGIKP 79

Query: 70  IIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVP-------------SIVLLVST 105
           I+G +  +  +           DN       +     VP              + L   +
Sbjct: 80  ILGVEAYVTPETGRTDTRCVSWDNSWKERNTRRSVTCVPHDPYDVSGGGLFTHLTLWAES 139

Query: 106 AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
            EG   L++  S   L     +  R+  + L     +GLI  +G  SG I          
Sbjct: 140 DEGLVNLMKASSVANLEGLVSRYPRMDNNVLSSFA-KGLICGSGCMSGAIPTRLLLGQFD 198

Query: 166 VAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEE 223
            A +     + +F  D  ++ +  H    +    + +V+LA     PLVAT++  +   +
Sbjct: 199 EALRMAGELQDIFGRDNFFIEIMDHGLSIEHQIRNDLVELAKRINAPLVATSDVHYAKRD 258

Query: 224 DYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
           D   HDV + +    V+    R +  + ++YL++ + M S+FSD+PEA +NT+ IA RC 
Sbjct: 259 DSLKHDVRICIETGDVMDGPHRFKFESEEYYLRSSAVMRSLFSDVPEACDNTLLIAERCD 318

Query: 283 --FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             F +     ++P+ +  +     +     L+ +    L+ +        G        R
Sbjct: 319 TGFCVAEDGSLMPQHVGADG----RASSEILQGEVEGWLQTKY-------GSIPDSVWNR 367

Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
              E+ VI       Y + VA      ++    VGPG+G  A S+ AYAL I++IDP+ +
Sbjct: 368 AQHEMAVIRETHAEEYLMAVAYCTNRLREEGHLVGPGKGILARSLVAYALGISEIDPIEY 427

Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            L F  F +      P   +   +     V++Y+ ++YG+   A +I +       A++D
Sbjct: 428 DLPFTDFQD---SVFPTAVLQTERGLSRRVLQYLCDRYGNGYAAAVIAYSRFNDAKAVKD 484

Query: 461 VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
           V               +   +  +  V LQ  A  S                 I+  L+ 
Sbjct: 485 VSHVCGY---------QRFWDASSAEVWLQDNAKKS-----------------IADGLKD 518

Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
                S  +  + + ++PL+++  + R   S    T F+ K  ++ GL +    G + L 
Sbjct: 519 CIYDCSVRSDVLALCNKPLAEVTSIVRFP-SGAESTAFDAKGCDELGLPRLRIAGSRVLQ 577

Query: 581 LLQKSLDFLAQRGVKVDLSLIP--FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
           ++Q +L F+    V           D+   Y LL+   T GI  L+  GM+  L   +  
Sbjct: 578 VVQDALRFIPDCNVPQVWDDSCSSLDESRVYDLLSAGYTAGIPFLD--GMKSELMQQKLT 635

Query: 639 CIEDIIAL 646
              ++I +
Sbjct: 636 SFAELIDI 643



 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 76/198 (38%), Gaps = 17/198 (8%)

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVE--KIKKFCQDARQFNIQIMPPSVNTPCV-- 826
           + +Y+ A++KT Y +EF+ A +    ++    K++   ++     I +  P++N      
Sbjct: 659 MFAYRVAYVKTLYTIEFMTAMLNSYNEDGARAKLESIFEEMYCLGIHVRMPNINQSQYYA 718

Query: 827 -------DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878
                  D +     I     AI+G+    A  I+        + S  DF  RV  +  N
Sbjct: 719 TAYSSTGDDEKSAYGIQLGFNAIRGISEQLAEEIVSTRNKGSAYRSFNDFIRRVSLEHCN 778

Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHEKGT 933
              +  L+ AGA DC    R  L Q  +++ +  +     +++   ++      A     
Sbjct: 779 AGNVNYLIRAGAFDCVNPCRKALAQCGNDLIEAERQYRAAQSHGQGDLLQDVMDASPCAQ 838

Query: 934 FSDKITLEKFSVENSSVR 951
            S    +   S  + + R
Sbjct: 839 KSTDEVVPNGSDWDQTTR 856


>gi|224540943|ref|ZP_03681482.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM
            15897]
 gi|224526094|gb|EEF95199.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM
            15897]
          Length = 1444

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 161/922 (17%), Positives = 309/922 (33%), Gaps = 199/922 (21%)

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
               + +L  T EG + +  LVS         Q  RI  S L E   EGL+  +G  +  +
Sbjct: 594  PYHMCVLAKTPEGLKNMFRLVSIANTK-YFHQCDRIPRSEL-EFYREGLLFGSGCVNSKV 651

Query: 156  DRAFFFNSSQVAEKRLLTFKKL----FGDRLYV-NLQRHRGYD--RYRESQVVQLAYTHE 208
                     +   + +  +  +      D +Y+ +  ++   D       +++++A   +
Sbjct: 652  FEIASTRDEEELREEIKFYDYIEIQPLEDAMYLVDRGKYESIDDIERIYKRIIKIAKEEK 711

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMV 261
              + AT +  FL + D    +V +  +   +  +        +   +TPD YL+   EM+
Sbjct: 712  KLICATGDVHFLDKRDKVYREVFITNSKIQINGKPHPLLVRNNPRALTPDVYLRTTDEML 771

Query: 262  SIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
              F  L +       + NT ++A      + V    L     +  D        +LR   
Sbjct: 772  ECFPYLSDEETYEYVVTNTNKVADMIGDDIIVTKEGLYPPSIENVDV-------KLRELC 824

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
                     +         +    RL+ EL+ I +  F+  + I ++ ++ + +    VG
Sbjct: 825  HKNAHATYGE------VLPEIVSARLEKELSNIIKHGFAVIYFIASELVRVSNEAGYLVG 878

Query: 376  PGRGSGAGSVTAYALTITDIDPL------------------------------------- 398
              RGS   S  A    I++++PL                                     
Sbjct: 879  -SRGSVGSSFVATMAGISEVNPLAPHYICPHCKHNEFLDEGVISDGYDLPDKNCPVCGHK 937

Query: 399  ----RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                  ++ FE FL  +   +PD D++F  + + +   Y +  +G + V +  T  ++  
Sbjct: 938  MKGEGHNIPFETFLGFNADKVPDIDLNFSGEYQPKAHAYTKTIFGEDHVFRAGTISTVAE 997

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A                                +A A++    +    +     L  +
Sbjct: 998  KTAYGYA----------------------------KAYAENLGLED----NIRSAELQRL 1025

Query: 515  SQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLI 569
            +    G+ R    H  GI++      +    P      DV ++   T F+   I    ++
Sbjct: 1026 ANGCTGVKRTTGQHPGGIIVIPNDMEVFDFTPYQYPADDVNAEWRTTHFDFHKIHD-NVL 1084

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTK 615
            KFD LG    T+++   D        VD   IP +D +   L                  
Sbjct: 1085 KFDILGHVDPTVIRMLQDMTG-----VDPKSIPTNDQKVMSLFNSSKALGCDLSFLNCKT 1139

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
            G LG+ +  +  +R  LE   P C  +++ +  L          VY           +  
Sbjct: 1140 GALGLPEFGTKFVRGMLEQTHPTCFNELVIISGLSHGT-----DVYLG---------NAE 1185

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
             LI       Q VI  ++ +M +  +  G    +A  +   + K    ++  QK  ++  
Sbjct: 1186 TLIKSGTCTLQEVIGCRDDIM-VYLIEKGLPNKDAFDIMECVRKGKSPKVFPQKG-YVEL 1243

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              K+ + +    +  ++      Y F K+HA AY + + + AW K +YP E+ A   T  
Sbjct: 1244 MKKHNVPQWYIDSCLKI-----KYMFPKAHAVAYVLSAIRVAWWKLYYPREYYAVYFTTR 1298

Query: 796  MDNVEKIKKFCQ------------------------------------DARQFNIQIMPP 819
              +   I+                                        +  +  ++    
Sbjct: 1299 C-DFYDIETLIAGKEAVFDKYQECLKLKAEHKASNKEEGLITVFEVALEMFERGLKFSKI 1357

Query: 820  SVNTPC-VDFKVGDN---RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+       F    +    I     +I G+G      ++EA  ++PF S+ED   R    
Sbjct: 1358 SLEQSDSRKFICNPDDPTAIIPPFTSIDGLGDAVGDSVVEARKERPFTSIEDIKKRTRLS 1417

Query: 876  KLNRRVLESLVFAGALDCFGYS 897
              +   +E+L   G L+ F  S
Sbjct: 1418 GTH---IETLQKMGVLNGFSES 1436



 Score = 78.5 bits (192), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S ++G  S+ + + + +     AIA+TD  N+ S  +  Q A    ++ I 
Sbjct: 319 VELHCHSNMSTMDGIASVGSYIKRASEWGMKAIAVTDHGNVQSFPDA-QAAAGDKLKMIY 377

Query: 72  GCQLDI 77
           G ++++
Sbjct: 378 GIEMNM 383


>gi|300173484|ref|YP_003772650.1| DNA polymerase III subunit alpha [Leuconostoc gasicomitatum LMG
            18811]
 gi|299887863|emb|CBL91831.1| DNA polymerase III, alpha subunit, Gram-positive type [Leuconostoc
            gasicomitatum LMG 18811]
          Length = 1437

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/921 (17%), Positives = 305/921 (33%), Gaps = 195/921 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  MT              LLV    G + L +LVS+  + +   +  RI  S L +   
Sbjct: 595  NDHMTEGDAWKHGRPVHATLLVQNDIGLKNLYKLVSQSNI-NFFARVPRIPRSILDQY-R 652

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-------FGDRLYVNLQRHRGYDR 194
            EGLI+ TG +SG +           A K+   +  +       +   L   L  +     
Sbjct: 653  EGLIIGTGDTSGDVIMTLIEKGRDEALKKAQYYDYIEIQPTANYEPMLESELIANTEKLH 712

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                ++V +    + P+V T +  + + ED    D+L+A       +        P  Y 
Sbjct: 713  AILQEMVSIGDQLKKPVVVTGDVKYTNPEDKIYRDILIATQPGNPQN----RTALPKLYF 768

Query: 255  KNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   +++  ++ + E       ++NT  +A     I  + +   P  I    D++ K   
Sbjct: 769  RTTQDLLDDYAFMGEDLAKKLIIDNTHVVANMLETISPLKSGSYPPNIPSAGDELTK--- 825

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
               R  A A    +     +         + R+D EL  I    F+ +++I    ++ + 
Sbjct: 826  ---RTLATA---KKWYGDPV-----PNVIQSRIDQELTAIIGNGFAPHYIIAQRLVEKSN 874

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRF---------------------------- 400
            K+   VG  RGS   S  A    IT+++P                               
Sbjct: 875  KDGYLVG-SRGSVGSSFVATMSGITEVNPFAPHYRSAHGDYFELADPKIYESGYDLPDKA 933

Query: 401  --------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                          ++ FE F+      +PD D++F  D +     Y++  +G   V + 
Sbjct: 934  DPNHPNEMLIGDGQNIPFETFMGFKGDKVPDIDLNFSGDYQPIAHNYMKVLFGEHNVYRA 993

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T  ++  K A   V +  +  + +  R                                
Sbjct: 994  GTIATVAEKTAFGYV-KGYERDHEKQYRGA------------------------------ 1022

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRSD---LPVTQFNMK 561
             V+RL   +Q + G+ R    H  GI+I  R   +    P+             T  +  
Sbjct: 1023 EVERL---AQGVTGVKRTTGQHPGGILIVPREYEVYDFTPVQYPADDQKSLWQTTHMDYH 1079

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------- 612
             I    L+K D LG    T+++   D        +D   IP +D     L          
Sbjct: 1080 AIHD-NLLKMDILGHDDPTMVRTLKDM-----SGIDPQSIPANDPGVLSLFTSPKALGVT 1133

Query: 613  -----TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
                 +  GTLG+ +  ++ +R  LE  QP    +++ +  L     +            
Sbjct: 1134 EEQIFSKTGTLGLPEFGTNFVRGMLEETQPHNYSELLQISGLSHGTDVWLG--------- 1184

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
                 + + LI+        VI  ++++M       G+  ++A  +   + K        
Sbjct: 1185 -----NANELIENGTATIGTVIGTRDKIMTDLINW-GFPAADAFNVMEKVRKGKG----- 1233

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
                 I+   +  + +      +        Y F ++HAAAY +++ + A+ K ++P+ +
Sbjct: 1234 -----ITDDYQVQLREAKIPEWYIQSMLKIKYMFPRAHAAAYVLMALRIAYFKVYFPMIY 1288

Query: 788  LAASMTLEMDNVEKIK---------------------------------KFCQDARQFNI 814
             A   ++  D  + +                                  +   +A +  I
Sbjct: 1289 YATYFSVRADQFDIVAMSRGKNATKEALKRLRALGNDATVGDKNLLTVLEMANEALERGI 1348

Query: 815  QIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                  +      ++ +  + +    +A+  +G   A+ I+ A  DK F S ED   R  
Sbjct: 1349 TFSMVDLYKSEANEWVIDGDTLIPPFSAVPSLGENVAKQIIVARQDKSFLSKEDLKKRGK 1408

Query: 874  SKKLNRRVL-ESLVFAGALDC 893
              +     L ++ V  G  D 
Sbjct: 1409 VSQTVIDYLTQNSVLDGMPDE 1429



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + LQVHS+ S ++       +        Q A+AI DT N+    E         ++ I 
Sbjct: 331 IELQVHSTMSSMDAVTDYAAVAKLAKNWGQEALAIIDTANVQGFPEAVAAGQKNDLKMIY 390

Query: 72  GC 73
           G 
Sbjct: 391 GM 392


>gi|291166154|gb|EFE28200.1| DNA polymerase III, alpha subunit, Gram-positive type [Filifactor
            alocis ATCC 35896]
          Length = 1407

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 174/949 (18%), Positives = 310/949 (32%), Gaps = 220/949 (23%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +  I  C +    + N K+T +         SI +      G + L +L+S  ++     
Sbjct: 549  LTMIEECGVTTLAEVNQKIT-KTNIDTIRDKSITIFAQNLVGLKNLYKLISFSHIK-HFY 606

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-----SSQVAEKRLLTF------- 174
            +  RI  S L E   EGL++ TGG +G I               V ++++  +       
Sbjct: 607  RIPRILKSELVE-HREGLLIGTGGENGEIFGGVREEVERGVDPSVVDEKIKFYDFAEVMP 665

Query: 175  ----KKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                +  F  R  +N        R    ++   A    +  VA  N  +L+ ED     +
Sbjct: 666  VSTYRSFFSARFDMNETDL----RRINQRIYDAATQAGIMTVAVGNVHYLNPEDGIYRHI 721

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE------NTVEIARRCSFI 284
            L               R+    Y +   EM+  F  L + +       NT + A     +
Sbjct: 722  LRYGQKKKD------DRIDQALYYRTTQEMLDEFEYLGKEVAYEIVVKNTNDFADLIEEM 775

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            L V     P  IE   +D        LR       +       I      +   +RLD E
Sbjct: 776  LPVPEGTFPPEIEGAKED--------LREMCYEKAKR------IYGNPLPEIVEKRLDRE 821

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----- 399
            L+ I    ++  ++I    +  + ++   VG  RGS   S  A    IT+++PL      
Sbjct: 822  LSSIIGNGYAVMYIIAQKLVTKSLRDGYLVG-SRGSVGSSFAATMSDITEVNPLPPHYIC 880

Query: 400  --------------------------------------FSLLFERFLNPDRMSMPDFDID 421
                                                  F + FE FL  +    PD D++
Sbjct: 881  ENEDCKYSEFMESGAFGSGVDMPNKLCPCCGRELKKDGFDIPFEVFLGFEGDKEPDIDLN 940

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  + +    ++V++ +G   V +  T G++  K A   V + L                
Sbjct: 941  FAGEYQPNAHKFVEDLFGEGYVFRAGTIGTVAEKTAYGYVVKYL---------------- 984

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PL 539
                                   +    RL        G+ R +  H  G+++  +   +
Sbjct: 985  ---------------EENNLVANNAEKQRLQ---LGCTGIKRTSGQHPGGVMVCPKNKDI 1026

Query: 540  SQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
                P+     D +  +  T F+   I    ++K D LG    ++++   D        V
Sbjct: 1027 YDFTPVQYPANDTKCGVITTHFDYHSI-SGRILKLDILGHDVPSIIRHLEDM-----TNV 1080

Query: 597  DLSLIPFDDHETYHLLTTKG--------------TLGIFQLESSGMRQALEGMQPDCIED 642
              + IP DD     + T+                TLGI +  +  ++  L    P    +
Sbjct: 1081 VATEIPLDDERVMSIFTSTDAIDCDLSQIQCETGTLGIPEFGTRFVQHMLMDTNPHTFAE 1140

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            +I +  L     +               + +   L+       + VI  ++ +M      
Sbjct: 1141 LIRISGLSHGTDV--------------WVNNAQDLVRSNTVTLKDVISTRDDIMNYLIQE 1186

Query: 703  S---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
                  S    + +R+   K + EE ++             +      N +    K   Y
Sbjct: 1187 GLPSKMSFKIMENVRKG--KGLTEEQEEC------------MISHQVPNWYITSCKKIKY 1232

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------- 800
             F K+HA AY ++S++ A+ K ++   F AA  + ++DN +                   
Sbjct: 1233 MFPKAHAVAYVMMSFRIAYFKVYHKEAFYAACFSTKVDNFDVDLICRGKEAVMMAYQELK 1292

Query: 801  --------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGV 845
                           + +   +  Q  +++    +       F V DN I   L +I G+
Sbjct: 1293 QKENNLTAKEMGFITVLELAYEMHQRGVKMNHVDIYKSDSKKFYVLDNEILPPLLSIPGL 1352

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            G T A  I E +    F SLEDF  R    K ++ V+E+L   G L   
Sbjct: 1353 GLTVAEKIKEEAGKSEFISLEDFRIRT---KASKTVIETLRNHGCLQGL 1398



 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+S S +EG LS   +L         AIAITD   + +  +    A   GI+ + 
Sbjct: 305 VELHAHTSMSSMEGLLSAKELLGAAKEFGHKAIAITDDAVVQAFPDAMGSAKKTGIKVLY 364

Query: 72  GCQLD 76
           G +  
Sbjct: 365 GVEGH 369


>gi|293374694|ref|ZP_06621002.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
            sanguinis PC909]
 gi|292646608|gb|EFF64610.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
            sanguinis PC909]
          Length = 1528

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 162/1024 (15%), Positives = 326/1024 (31%), Gaps = 236/1024 (23%)

Query: 27   LSLNNILDK-IAADQQPAIA------ITDTNNLFSALEFSQKACAAG------IQPIIGC 73
             +++    + +      A++      +T  +           A A G      ++ I+  
Sbjct: 567  ATIDEKFKRKMKRFNLKALSKFFKVDLTQHH------RAIYDARATGQAFILMLRDILKL 620

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +    + N  +  +          + +L     G++ L ++VS+    D      RI  
Sbjct: 621  DIKTHDEVNQLVDKETSFKLDRTTHVTILAQNQVGFKNLFKVVSQSMTCD-LYGQPRIRR 679

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRG 191
            S+LQ    EGL++ +   +G +  +      +  +++   +   ++    +Y +L     
Sbjct: 680  SYLQ-AHREGLLIGSSCVNGEVWESALNKPYEDLQEKAKFYDYLEVQPPEVYSHLIDQNS 738

Query: 192  YD-----RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM---AVAHSTVVSQK 243
             +           ++++     +P+ AT +   L+ ED     +      +         
Sbjct: 739  KEMAQSIIETIKTIIKVGEELNIPVCATGDVHHLNREDKLYRQIYTRTPMIGGGRHPLNH 798

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEA------LENTVEIARRCSFILQVHAPILPRFIE 297
               +  P  + +   EM   FS L EA      + N   IA  C  I  +          
Sbjct: 799  PDIKEIPSMHFRTTDEMYHDFSFLDEAKQKEIIVTNPNAIADSCEMIKAIK--------- 849

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARM 351
               D++    ++ L++K +  ++ RL +    + +        Q    RL  ELN I   
Sbjct: 850  ---DELFTPADDFLKDKGIPSIKDRLTEMCYERAHEWYGEELPQYVLDRLIKELNSIIGN 906

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------RFSLLFE 405
             F+  + I    ++ +  +   VG  RGS   S  A    IT+++PL         L   
Sbjct: 907  GFAVIYYISHMLVKKSLDDGYLVG-SRGSVGSSFVATLTDITEVNPLSPHYRCPNCLFAA 965

Query: 406  RFLNPD-----------------------RMSMPDFDI---------------------- 420
              +N +                          +PD                         
Sbjct: 966  FKMNEEEKQRYGIRPEEEAFQDILANAESGFDLPDATCPHCGTKMRKDGHDIPFETFLGF 1025

Query: 421  ----------DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
                      +F  + +     Y +  +G +   +  T G++  K A   V         
Sbjct: 1026 KGDKVPDIDLNFSGEYQPVAHLYCREVFGDDFAFRAGTIGTVAEKTAFGYV--------- 1076

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
                                       F E    +     +  +++  EG+ R +  H  
Sbjct: 1077 -------------------------KGFLEDTNREMRTAEIERMAKGCEGVRRTSGQHPG 1111

Query: 531  GIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            GI++      +  + P+     D  ++   T F+   I    L+K D LG    T+++  
Sbjct: 1112 GIIVVPNYMDIYDVTPIQYPADDPTAEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRYL 1170

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQA 631
             D        +D   IP DD E Y L               +T G+ G+ +  +  +R  
Sbjct: 1171 QDI-----SGIDPKDIPTDDPEVYKLFYSTESLGVTPEQIRSTTGSYGVPEFGTPFVRNM 1225

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            LE  +P    +++ +  L          V+ N                    E + VI  
Sbjct: 1226 LEDTKPKTFAELVKISGLSHGT-----DVWLNNAADLVSGKYDKF----GKVEFKNVIGC 1276

Query: 692  QEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++ +M       L    +    + +R+ +  K  +   + +E          + K     
Sbjct: 1277 RDDIMVYLMYGGLEPALAFKIMEFVRKGLASKNPDGWKEFEEE---------MRKHKIPE 1327

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD---------NV 799
             +        Y F K+HA AY +++ + AW K H+P+ +  A  +   D           
Sbjct: 1328 WYIWSCGQIKYMFPKAHATAYVLMAIRIAWFKVHHPIYYYCAYFSKRADVFEMETMIKGP 1387

Query: 800  EKIKKFCQDARQFNIQIMPPSVN-------------------------TPCVDFKVGDNR 834
            + I+K   +  +      P   N                         +  VDFK+ ++ 
Sbjct: 1388 DAIRKRLDEIEEKGFDATPKEKNLVTILEIALEMTERGFYFQNFNIEESNAVDFKISEDG 1447

Query: 835  I--YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
                    A+ G+G   AR I+ A  + PF ++++   R    K+++ ++E L       
Sbjct: 1448 KSLIPPFTALDGLGENVARQIVAAREEAPFVTIKEVQQR---GKVSKALIEKLQLMNVFG 1504

Query: 893  CFGY 896
                
Sbjct: 1505 DMEL 1508



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS  S ++G   + + + + A     AIA+TD   + +  +    A    I+ I 
Sbjct: 347 VELHVHSKMSAMDGVTDIGDYIKQAAKWGHKAIALTDHGVVQAIPDAYHAAKKNDIKIIY 406

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G +  +   + L   N+   P      +V  V T
Sbjct: 407 GVEGYLVEDEPLLAWNEKSIPLNDATYVVYDVET 440


>gi|325843612|ref|ZP_08168008.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
            sp. HGF1]
 gi|325489298|gb|EGC91675.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
            sp. HGF1]
          Length = 1528

 Score =  386 bits (992), Expect = e-104,   Method: Composition-based stats.
 Identities = 162/1024 (15%), Positives = 326/1024 (31%), Gaps = 236/1024 (23%)

Query: 27   LSLNNILDK-IAADQQPAIA------ITDTNNLFSALEFSQKACAAG------IQPIIGC 73
             +++    + +      A++      +T  +           A A G      ++ I+  
Sbjct: 567  ATIDEKFKRKMKRFNLKALSKFFKVDLTQHH------RAIYDARATGQAFILMLRDILKL 620

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +    + N  +  +          + +L     G++ L ++VS+    D      RI  
Sbjct: 621  DIKTHDEVNQLVDKETSFKLDRTTHVTILAQNQVGFKNLFKVVSQSMTCD-LYGQPRIRR 679

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRG 191
            S+LQ    EGL++ +   +G +  +      +  +++   +   ++    +Y +L     
Sbjct: 680  SYLQ-AHREGLLIGSSCVNGEVWESALNKPYEDLQEKAKFYDYLEVQPPEVYSHLIDQNS 738

Query: 192  YD-----RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM---AVAHSTVVSQK 243
             +           ++++     +P+ AT +   L+ ED     +      +         
Sbjct: 739  KEMAQSIIETIKTIIKVGEELNIPVCATGDVHHLNREDKLYRQIYTRTPMIGGGRHPLNH 798

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEA------LENTVEIARRCSFILQVHAPILPRFIE 297
               +  P  + +   EM   FS L EA      + N   IA  C  I  +          
Sbjct: 799  PDIKEIPSMHFRTTDEMYHDFSFLDEAKQKEIIVTNPNAIADSCEMIKAIK--------- 849

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARM 351
               D++    ++ L++K +  ++ RL +    + +        Q    RL  ELN I   
Sbjct: 850  ---DELFTPADDFLKDKGIPSIKDRLTEMCYERAHEWYGEELPQYVLDRLIKELNSIIGN 906

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------RFSLLFE 405
             F+  + I    ++ +  +   VG  RGS   S  A    IT+++PL         L   
Sbjct: 907  GFAVIYYISHMLVKKSLDDGYLVG-SRGSVGSSFVATLTDITEVNPLSPHYRCPNCLFAA 965

Query: 406  RFLNPD-----------------------RMSMPDFDI---------------------- 420
              +N +                          +PD                         
Sbjct: 966  FKMNEEEKQRYGIRPEEEAFQDILANAESGFDLPDATCPHCGTKMRKDGHDIPFETFLGF 1025

Query: 421  ----------DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
                      +F  + +     Y +  +G +   +  T G++  K A   V         
Sbjct: 1026 KGDKVPDIDLNFSGEYQPVAHLYCREVFGDDFAFRAGTIGTVAEKTAFGYV--------- 1076

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
                                       F E    +     +  +++  EG+ R +  H  
Sbjct: 1077 -------------------------KGFLEDTNREMRTAEIERMAKGCEGVRRTSGQHPG 1111

Query: 531  GIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            GI++      +  + P+     D  ++   T F+   I    L+K D LG    T+++  
Sbjct: 1112 GIIVVPNYMDIYDVTPIQYPADDPTAEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRYL 1170

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQA 631
             D        +D   IP DD E Y L               +T G+ G+ +  +  +R  
Sbjct: 1171 QDI-----SGIDPKDIPTDDPEVYKLFYSTESLGVTPEQIRSTTGSYGVPEFGTPFVRNM 1225

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            LE  +P    +++ +  L          V+ N                    E + VI  
Sbjct: 1226 LEDTKPKTFAELVKISGLSHGT-----DVWLNNAADLVSGKYDKF----GKVEFKNVIGC 1276

Query: 692  QEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++ +M       L    +    + +R+ +  K  +   + +E          + K     
Sbjct: 1277 RDDIMVYLMYGGLEPALAFKIMEFVRKGLASKNPDGWKEFEEE---------MRKHKIPE 1327

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD---------NV 799
             +        Y F K+HA AY +++ + AW K H+P+ +  A  +   D           
Sbjct: 1328 WYIWSCGQIKYMFPKAHATAYVLMAIRIAWFKVHHPIYYYCAYFSKRADVFEMETMIKGP 1387

Query: 800  EKIKKFCQDARQFNIQIMPPSVN-------------------------TPCVDFKVGDNR 834
            + I+K   +  +      P   N                         +  VDFK+ ++ 
Sbjct: 1388 DAIRKRLDEIEEKGFDATPKEKNLVTILEIALEMTERGFYFQNFNIEESNAVDFKISEDG 1447

Query: 835  I--YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
                    A+ G+G   AR I+ A  + PF ++++   R    K+++ ++E L       
Sbjct: 1448 KSLIPPFTALDGLGENVARQIVAAREEAPFVTIKEVQQR---GKVSKALIEKLQLMNVFG 1504

Query: 893  CFGY 896
                
Sbjct: 1505 DMEL 1508



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS  S ++G   + + + + A     AIA+TD   + +  +    A    I+ I 
Sbjct: 347 VELHVHSKMSAMDGVTDIGDYIKQAAKWGHKAIALTDHGVVQAIPDAYHAAKKNDIKIIY 406

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G +  +   + L   N+   P      +V  V T
Sbjct: 407 GVEGYLVEDEPLLAWNEKSIPLNDATYVVYDVET 440


>gi|19548818|gb|AAL90806.1| polymerase III subunit alpha [Escherichia coli]
          Length = 324

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 152/324 (46%), Positives = 221/324 (68%), Gaps = 13/324 (4%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
           +TLT++  +L+ + +R        +D++ IP DD +++ +L    T  +FQLES GM+  
Sbjct: 180 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 239

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKE 684
           ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E+I        H  + P+L+ 
Sbjct: 240 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 299

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLS 708
           T G+I+YQEQVMQIAQ+LSGY+L 
Sbjct: 300 TYGIILYQEQVMQIAQVLSGYTLG 323


>gi|304439997|ref|ZP_07399890.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371489|gb|EFM25102.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 1403

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 166/952 (17%), Positives = 332/952 (34%), Gaps = 203/952 (21%)

Query: 51   NLFSALEFSQKACAAGIQPIIGCQ---LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
            NL  A      A A     I   +        ++  K+ ++             +V T E
Sbjct: 530  NLEGAHRAVNDAEATAEAFIKMMKLGGSPKSFEEINKLFDKIDKSVLFSKDSTAIVQTQE 589

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G + L +LVS  ++ +      ++  +   +   +G+++ +G S G +  A +F      
Sbjct: 590  GLKNLYKLVSASHM-EYFNIEAKVPKTIFNKY-RKGILLGSGTSKGELWNAIYFGKPHEK 647

Query: 168  EKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLF 219
               + ++      + +  +  YV  ++ +  +       +++ L      P+VAT +  +
Sbjct: 648  LLEIASYYDYLEIQPIGNNLNYVVSEKLKDKEDLININKKILALGDELNKPVVATGDVYY 707

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE-----NT 274
            L      +  ++++     V  +   P      Y +   +M+  F  L +  E     N+
Sbjct: 708  LYPHQDLSRRIVLSGVTGPVNPEVKIPNTL---YFRTTDQMLDEFDYLGDRCEEVVITNS 764

Query: 275  VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
             +IA     I  +     P +IE   + ++K   +  R  ++ G                
Sbjct: 765  NKIADMVDDIKPLPDGTFPPYIEGSEEMLKKITFD--RAHSIYG------------EDLP 810

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
            +   +RLD ELN I    ++  ++I    ++ +  +   VG  RGS   S  A    IT+
Sbjct: 811  EIVEKRLDRELNSIIGNGYAVLYIIAEKLVKKSNSDGYLVG-SRGSVGSSFAATMAGITE 869

Query: 395  IDPLR-----------------------------------------FSLLFERFLNPDRM 413
            ++PL                                           ++ FE FL  +  
Sbjct: 870  VNPLPPHYVCPKCKYSEFVDEKLVGSGVDLERKNCPVCGTELNRDGHNIPFEVFLGFEGD 929

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ---MPYS 470
              PD D++F  + +    +Y +  +G   V +  T G++    A R V    +   +P  
Sbjct: 930  KEPDIDLNFAGEYQPVAHKYTEELFGEGYVFRAGTIGTVAENTAYRIVKNYYKDEIVPPV 989

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            ++DRL K                                       ++ G+ R +  H  
Sbjct: 990  EIDRLAK---------------------------------------EITGVKRTSGQHPG 1010

Query: 531  GIVIGDR--PLSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            G++I  +   +    P+        S +  T F+  ++    ++K D LG    T+++  
Sbjct: 1011 GVMIVPKTSSIYDFSPIQYPADKKSSGVITTHFDYNFLH-GKILKLDILGHDGPTIIKML 1069

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQA 631
             D    +   + L     DD  T  L                  GTLGI +  +  +++ 
Sbjct: 1070 EDLTGLKSEDIYL-----DDKRTMSLFNSSEELKMNKEIYECETGTLGIPEFGTDFVKRM 1124

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            L   +P    +++ +  L       ++   N              L+D  L + Q VI  
Sbjct: 1125 LIKTKPSTFSELVQISGLSHGT---DVWTNNAE-----------DLVDQGLAKLQDVIST 1170

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            +E +M         +      + +   +K K   D+Q+E          + K    + + 
Sbjct: 1171 REDIMVYLIQAGAENKMAFFTMEK--VRKGKGLTDEQREI---------MEKLPLPSWYI 1219

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------- 800
               +   Y F K+HA AY ++S++ A+ K +YP+E+ A   T ++ + +           
Sbjct: 1220 GACEKIKYMFPKAHAVAYVMLSFRVAYYKLNYPLEYYATYFTNKLTDFDIETISKGVGAM 1279

Query: 801  --KIKKFCQ-------------------DARQFNIQIMPPSVNTPCVD-FKVGDNRIYYS 838
              K+ +  Q                   +     I+     +       F + D  I   
Sbjct: 1280 KEKLNELLQIKNPSQKEKGQRNTLEMALEMYSRGIEFKFIDIYKSQAKTFVIEDGAIRVP 1339

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL-ESLVFAG 889
              A+ G+G   A  I+E+S +  + S+EDF ++  + K    +L E+  F G
Sbjct: 1340 FMAVPGLGEAIANSIVESSKENKYISVEDFINKTGATKAIVEMLRENNCFEG 1391



 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L++H+  S + G                 A+AITD +++         + + GI+ I 
Sbjct: 308 VELRLHTKMSTMSGITDFEEFAKFAKDLGHSALAITDVSDVQGFTNAMDASKSTGIKAIY 367

Query: 72  GCQL 75
           G  +
Sbjct: 368 GLDM 371


>gi|309776025|ref|ZP_07671017.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916307|gb|EFP62055.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Erysipelotrichaceae bacterium 3_1_53]
          Length = 1271

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 153/912 (16%), Positives = 299/912 (32%), Gaps = 186/912 (20%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK---------QSVRICLSWLQEIGTEG-L 144
             V  + +L     G + L ELV+  +                  RI  S +++    G L
Sbjct: 408  RVKHVTVLAKNMAGLKELFELVTLSHTKYLAYSSKSTNNIVAEPRILRSEIEKRRINGNL 467

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-----KKLFGDRLYVNLQRHRGYDRYRE-- 197
            ++ +   +G +       + Q  E+ +  +     + L   R  V        DR +E  
Sbjct: 468  LIGSSCLNGEVFDMAQTRNEQTLEEVMQFYDYIEIQPLENYRHLVERDSISSMDRLKEIL 527

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH--------STVVSQKDRPRVT 249
              +V  A   +  LVAT +  ++   +    D+ ++                +K R    
Sbjct: 528  KSIVSAADKLDKLLVATGDCHYVQPGEKMIRDIYISSQAIGGVRHPLYIYNQEKRRKFKA 587

Query: 250  PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            PD + +   EM+  F+ L E  A +  ++  +  + ++Q   P+  R    + +      
Sbjct: 588  PDQHFRTTKEMLKEFAWLGEQRAYDMVIKNTKLIADMIQEVKPVKDRLYPPDIEG----S 643

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + +L +        +            +   +RL+ EL  I    F   + I    ++ +
Sbjct: 644  DQKLTDICYENAHKKYGP------VLPEIVEKRLEKELASIIGHGFYVVYYISHLLVKKS 697

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------------- 398
              +   VG  RGS   S  A    IT+++PL                             
Sbjct: 698  LNDGYLVG-SRGSVGSSFVATMSEITEVNPLAPHYVCPKCHYVKFYTDGSVADGFDLPDI 756

Query: 399  ------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL  +   +PD D++F  D +     Y +  +G + V + 
Sbjct: 757  ICPNCGETIRGDGHDIPFETFLGFEGDKVPDIDLNFSGDYQPNAHAYTKEVFGDDHVYRA 816

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  + A   V                            +   ++     +     
Sbjct: 817  GTIGTVATQTAFGYV----------------------------KGYEEEMGIEGSMRN-- 846

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMY---RDVRSDLPVTQFNMK 561
               ++L +++  EG+ R    H  GI++    L      P+     +  ++   T F   
Sbjct: 847  --AQVLHLAKGCEGVKRTTGQHPGGIIVIPLDLDVHDFTPVQYPANNPYAEWKTTHFEFH 904

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I    ++KFD LG    T ++       +R   +D + IP +D ET  + +    L I 
Sbjct: 905  DIHD-NVLKFDILGHVDPTAMKML-----ERMSGIDPTTIPMNDPETMSVFSKVDALKID 958

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              +S+       G+       +  ++ L RP   D ++  +   +G +  + +   LID 
Sbjct: 959  TSKST-EETGAAGLPEFGTPFVRGILELTRPTTFDELLKISGLSHGTDVWLGNAKDLIDN 1017

Query: 681  MLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
                 + VI  ++ +M       L    + +  + +R+  G K         + +I    
Sbjct: 1018 GTCTLKSVIGCRDDIMVYLLHKGLRPKLAFTIMESVRKGKGLK---------DEWIPEMK 1068

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             NG+      +  ++      Y F K+HA AY +++ + AW K H P  +     ++  D
Sbjct: 1069 ANGVEDWYIDSCLKI-----KYMFPKAHATAYVMMAIRIAWFKVHRPQVYYCMFFSIRCD 1123

Query: 798  NVEKIKKFCQ----------------------------------------DARQFNIQIM 817
              + I+   +                                        +         
Sbjct: 1124 AYD-IETMIKGEQAIRRRMQEISDMLKNNETKKDVSKKDKDTFNTLELALEMNLRGYYFT 1182

Query: 818  PPSVNTPC-VDFKVGDNRIYY---SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
               +      +F V      Y      +I G+G   A  ++EA     F S ED   R  
Sbjct: 1183 NIDIMRSASREFIVDPENASYIIPPFTSIDGLGENVADTVVEARKQGAFLSKEDLQRRTA 1242

Query: 874  SKKLNRRVLESL 885
                  + +ES+
Sbjct: 1243 LSGTLVKKMESM 1254



 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           V L VH+  S ++G  ++   +D+  A    AIAITD   + +  +   K
Sbjct: 129 VELHVHTKLSEMDGVCNIEEYIDQANAWGMDAIAITDHLVVQAFPKAQHK 178


>gi|317132568|ref|YP_004091882.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense YUAN-3]
 gi|315470547|gb|ADU27151.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense YUAN-3]
          Length = 1457

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 166/912 (18%), Positives = 308/912 (33%), Gaps = 191/912 (20%)

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            +T  G          +LLV  + G + L +L+S+  L    K   R+  S L  +  EGL
Sbjct: 620  VTTGGDVRRLPSYHQILLVKNSTGLKNLYKLISKSQLDYYFKH-PRVPRSELSRL-REGL 677

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-------HRGYDRYRE 197
            ++ +   +G +  A          K++  F      +   N           +       
Sbjct: 678  LVGSACEAGELFHAILEGKPWEELKQIAAFYDYLEIQPLCNNSFLVREGKATQAQLEEFN 737

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
              +++L     LP+VAT ++ F+ E D     +LM+        +       P  Y +  
Sbjct: 738  RMILRLGDELHLPVVATCDAHFIDERDGVFRQILMSGMGFKDTDE------QPPLYFRTT 791

Query: 258  SEMVSIFSDLPE-----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
             EM+  F+ L E      +EN  +IA      ++   PI         D      +++L 
Sbjct: 792  GEMLKEFAYLGERAQEVVVENPNKIADMVEDDIR---PIPKGTYPPSLDGA----DDDLT 844

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                        +         +   +RL  E++ I +  FS  ++I    +  ++ +  
Sbjct: 845  RIVWGRAHDMYGENL------PEIVEKRLAREMDSIIKHGFSVLYMIAQKLVAKSESDGY 898

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLR--------------------------------- 399
             VG  RGS   S  A    IT+++PL                                  
Sbjct: 899  LVG-SRGSVGSSFVATMSGITEVNPLPPHYVCPKCKHSEFITDGSVGSGFDLPAKTCPVC 957

Query: 400  --------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                      + FE FL  D    PD D++F  D +    +Y +  +G   V +  T  S
Sbjct: 958  GEPLWRDGHDIPFETFLGFDGDKSPDIDLNFSGDEQPTAHKYTEELFGKGHVFRAGTISS 1017

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            +  K A   V + L+     + +                  A+++R              
Sbjct: 1018 VAEKTAYGFVKKYLEEKGKTLHK------------------AEEARL------------- 1046

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYR---DVRSDLPVTQFNMKWIEKA 566
               +    G+ R    H  G+++  R   +    P+     D  SD   T F+   +   
Sbjct: 1047 ---ALGCTGVRRTTGQHPGGMIVVPRDYDVYDFTPVQHPADDTSSDTITTHFDFNCLHDT 1103

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-------------- 612
             ++K D LG    TL ++  +   +  +      +P  D +   L               
Sbjct: 1104 -ILKLDILGHDVPTLYKRLEELTDKPVM-----SVPVPDPKVLELFTSTAPLGVRPEDID 1157

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +  GT  + +L +  +R  L   QP    D++ +  L       ++ + N +        
Sbjct: 1158 SETGTFSLPELGTKFVRGMLVESQPKTFSDLLQISGLSHGT---DVWLNNAQ-------- 1206

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
                LI     +   VI  ++ +M    L  G     A  +   + K    ++    + +
Sbjct: 1207 ---ELIRNGTCDISEVIGTRDNIMTY-LLHKGLKPKSAFKIMEIVRKGRAPKL--LTDDY 1260

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I    ++G+      +  ++      Y F K+HAAAY + + +  W K + P+E+  A +
Sbjct: 1261 IQEMKEHGVPDWYIDSCMKI-----KYMFPKAHAAAYVIAALRLGWYKVYMPLEYYCAYL 1315

Query: 793  TLEMDNV-------------EKIK--------------------KFCQDARQFNIQIMPP 819
            ++   +              +K+K                    +  ++     I  +  
Sbjct: 1316 SVRGGDFDAEIMTRGVERVVDKMKEIAQKGRDATQKESDMHAMLEIVREIYARGIPFLTV 1375

Query: 820  SVNTPC-VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
             +     V F   + +I   L ++KG+G + AR I  A     F S+E+  SR  + K  
Sbjct: 1376 DIYRSDPVRFLPQEGKIRPPLTSVKGLGESVARSIAAAREQGKFLSMEELQSRGGASKTV 1435

Query: 879  RRVLESL-VFAG 889
               LES    AG
Sbjct: 1436 VESLESFGALAG 1447



 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 3/110 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF---SQKACAAGIQ 68
           V L +H++ S ++        + + A     AIAITD     +  E     +     G +
Sbjct: 353 VELHLHTNMSAMDAVTPAAAYIKRAARWGHKAIAITDHGVAQAFPEAMNTVEAIRKDGGE 412

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
             +   ++    D+      G    P     V       G  R  + ++ 
Sbjct: 413 IKVIYGIEAYFVDDTVPATVGGANMPFSGEFVAFDLETTGLNRENDRITE 462


>gi|50365104|ref|YP_053529.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
 gi|50363660|gb|AAT75645.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
          Length = 1493

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 156/932 (16%), Positives = 308/932 (33%), Gaps = 212/932 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L    +G + + +LVS  +  +             +      +++  G  +  
Sbjct: 636  RGAHVNVLAKNQQGLKDIFKLVSISHTDNFFNSPKIFKEKLKEFKEKNNILIGAGCVNSE 695

Query: 155  IDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRE----SQVVQLAYTHE 208
            +       + +  E+ +  +   ++    +Y NL      + +       ++++LA  + 
Sbjct: 696  VFETARIGTDEKLEEIIPFYDYIEIQPLSVYKNLINDNQLEEHELIDVIKKIIRLAKKYN 755

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMV 261
            + LVAT+++ +   E  +  DV +                  ++    PD YL+  +EM+
Sbjct: 756  VMLVATSDAHYTRPELKKIRDVYINAKGLGGSRHPLFSFRNKNKLIDYPDQYLRTTNEML 815

Query: 262  SIFSDLPE-------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
              F+ L E        + NT +IA      + V    L     +  D +       L++K
Sbjct: 816  KEFAWLSEPALVQEMVITNTNKIAEMIDSNIIVIKDGLFTPNIENVDTL-------LKDK 868

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
                                +    RL+ EL  I +  F+  + I    ++ +  +   V
Sbjct: 869  CYETAHAMYGD------VLPEIVESRLEKELTSIIKHGFAVVYWISHLLVERSNNDGYLV 922

Query: 375  GPGRGSGAGSVTAYALTITDIDPLR----------------------------------- 399
            G  RGS   S  A A  IT+++PL+                                   
Sbjct: 923  G-SRGSVGSSFVATASKITEVNPLKAHYRCLNCKYSDFNTPIEIKCGYDLPEQNCPKCNE 981

Query: 400  ------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
                    + FE FL  D   +PD D++F  + +     + +  +G   V +  T  ++ 
Sbjct: 982  KLIGDGHDIPFETFLGFDGDKVPDIDLNFSGEYQPIAHNFTKEMFGENNVFRAGTISTVA 1041

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             K A   V                            +A  +++   E  +  P    +  
Sbjct: 1042 EKTAFGYV----------------------------KAFYEETGVLEEDM--PRKIEIER 1071

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGL 568
             ++ +EG+ R    H  GI+I  +   +    P+     D  S    T F+   I    L
Sbjct: 1072 QAKLVEGVKRTTGQHPGGIIILPKEFEIEDFSPVNFPADDASSSWKTTHFDFHSIHD-NL 1130

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT-------------- 614
            +K D LG    T L+   D        V+   IP +D + Y L +               
Sbjct: 1131 LKMDILGHVDPTALRMLGDLTG-----VNPINIPTNDPKVYSLFSNLSALNIKPEQINGE 1185

Query: 615  -KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              G +G+ +  +  +R  L   +P    D++ +  L       ++ + N R         
Sbjct: 1186 TTGAIGLPEFGTGFVRSMLRETKPKTFADLVQISGLSHGT---DVWLGNAR--------- 1233

Query: 674  IHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRA--MGKKIKEEMDKQ 728
               LI         VI  ++ +M       + +  S    + +R+   + K+ KE M   
Sbjct: 1234 --DLIKNNTANISTVIGCRDDIMVYLMGQGIDATTSFKIMESVRKGQGLRKEWKEIM--- 1288

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
                      + + +    +  ++      Y F K+HA AY +++Y+ AW K +YP E+ 
Sbjct: 1289 --------LAHNVPEWYIESCLKI-----KYMFPKAHATAYVLMAYRIAWYKIYYPAEYY 1335

Query: 789  AASMTLEMDNVE-------------KIKKF-----------------------CQDARQF 812
            A  +T   D  +             K+ +                          +    
Sbjct: 1336 ATFLTNRADAFDLKTFLGGYNGVKEKLAELELRKNKKDKMTTKELALMPVLEIGLEMFSR 1395

Query: 813  NIQIMPPSVNTPCVDFKV-------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             I++   +      D  +       G+  +Y     I  +G   A  I++A +++P  S+
Sbjct: 1396 GIKMANLNFEKSLADKYIIEKDESTGEATLYPPFLVIDSLGDAVADSIIKARSERPLTSV 1455

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            +D  SR    +   ++ E       LD     
Sbjct: 1456 KDLTSRTTITQTQMKIFE---QLNVLDTLAQD 1484



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 11/119 (9%)

Query: 2   TQYLEKSPS---FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
           ++ + K  S    V L VH+  S ++G  S+   L  +      AIAITD  N+ +  + 
Sbjct: 332 SEAMVKDDSEQKRVELHVHTKMSAMDGVSSIQEYLQMVDKWNWKAIAITDHINVQTFPDA 391

Query: 59  S--------QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                     KA    ++ I G ++++  +++  +    K        +V+      G 
Sbjct: 392 YNELKKINKNKAEEDKLKLIYGLEMNMIEKEDYWIVKNPKGQKIRESKMVVFDLETTGL 450


>gi|313888341|ref|ZP_07822012.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus
            harei ACS-146-V-Sch2b]
 gi|312845744|gb|EFR33134.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus
            harei ACS-146-V-Sch2b]
          Length = 1012

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 164/960 (17%), Positives = 316/960 (32%), Gaps = 205/960 (21%)

Query: 51   NLFSALEFSQKACAAG---IQPIIGCQLDIDM--QDNLKMTNQGKTPFPTVPSIVLLVST 105
            +L  A      A A     I+ I   + + +   ++  K      +      S++LLV  
Sbjct: 137  SLVGAHRAVNDAEATAEVFIKLIEKIKREEEFNFENLNKEIVNIDSKRLFESSLLLLVQN 196

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
              G + L  L+S  ++        ++  S L +   EG+++ +G S+  +  A +    Q
Sbjct: 197  EIGLKNLYMLISDSHMK-YFNFVAKVPRSLLDKY-REGILVGSGNSNSELFDAIYRMCPQ 254

Query: 166  VAEKRLLTFKKLFGDR------LYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSL 218
                 +  +      +      L +   ++   D R    +++ +     +P+VA +++ 
Sbjct: 255  EELLEIAKYYDFLEIQPASDNILAIEDGKYTIEDIREINKKIISIGEELNIPVVADSDTY 314

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVE 276
            +L E +     +++   +        R       Y K   EM+  FS L +  A E  V 
Sbjct: 315  YLEESEDVLRRIVL---NGKPGRPDPRASRNQKFYFKTTEEMLDEFSYLGQDKAYEVVVT 371

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
               +    ++   PI     +     + +  ++ LR                      + 
Sbjct: 372  NTNKLKNSIKDIKPI----PDGTYPPVIEGSDDSLREMTYKKAHDIYGDEL------PKI 421

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               RL+ EL  I    +S  ++I    ++ +  +   VG  RGS   S  A    IT+++
Sbjct: 422  VEDRLEKELKSIISNGYSVLYIIAQKLVKKSNDDGFLVG-SRGSVGSSFVATMADITEVN 480

Query: 397  PLR-----------------------------------------FSLLFERFLNPDRMSM 415
            PL                                           ++ FE FL       
Sbjct: 481  PLPPHYICPNCKYSEFTEDLTYGSGVDMPDKVCPKCGSPLKKDGHNIPFEVFLGFYGDKE 540

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ---MPYSQV 472
            PD D++F  + +    +Y +  +G   V +  T G +  K A   V +  +   +   ++
Sbjct: 541  PDIDLNFAGEYQPRAHKYTEELFGEGYVFRAGTIGKIADKTAYGYVKKYFENKHISPIEI 600

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            DRL + I +                                         R +  H  G+
Sbjct: 601  DRLSRAITDG---------------------------------------KRTSGQHPGGV 621

Query: 533  VIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            +I  +   +    P+     D  S +  T F+  +I    ++K D LG    T+++   D
Sbjct: 622  MIVPKTNSIFDFTPIQYPADDPSSGVITTHFDYNFIH-GKILKLDILGHDGPTIIKMLED 680

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALE 633
            F       +D + I  DD +T  +                  GTLGI +  +S +   L 
Sbjct: 681  FTG-----IDSNTIRLDDKKTLSIFNSAEAFNMDEEVFSCKTGTLGIPEFGTSFVISMLL 735

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
               P    D++ +  L     +               I +   L+D    E + VI  +E
Sbjct: 736  ETNPKNFADLVRISGLSHGTDV--------------WISNAQELVDSGRAELKDVIATRE 781

Query: 694  QVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
             +M            +    + +R+   K + EE +   +                   +
Sbjct: 782  DIMVYLINAGAENKMAFDTMEKVRKG--KGLTEEQESIMKNLDL------------PEWY 827

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV----------- 799
                K   Y F K+HA AY ++S++ A+ K +YP+ F A   T+++ +            
Sbjct: 828  IDSCKKIKYMFPKAHAVAYVMLSFRIAYYKLNYPLAFYATFFTIKLTDFNGENIIEGPNF 887

Query: 800  -----------------EK----IKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY 837
                             +K    + +   +      Q +   +       F + D +I  
Sbjct: 888  LKNRIKMLREIEKPTAKDKGEIRVSEVALEMYARGFQFLKADIYKSKASKFTIEDGKIRM 947

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             + A+ G+G   A  I + S    + S+EDF  R         V+  L   G L+    +
Sbjct: 948  PIRAVPGIGENCANKIEQESQKSKYLSIEDFSKRT---GAGNSVITILQKNGMLEDLDET 1004


>gi|313665237|ref|YP_004047108.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            leachii PG50]
 gi|312949309|gb|ADR23905.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            leachii PG50]
          Length = 1480

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 161/923 (17%), Positives = 320/923 (34%), Gaps = 204/923 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG-TEGLIMLTGGSSGPID 156
               +LV    G + L +LV++ +  +    S +I  S L E+     L+  +   +  I 
Sbjct: 632  HTNILVKNQAGLKELYKLVTKSHTTN-FYSSPKIFKSDLIEVKKNNNLLFGSSCVNSEIF 690

Query: 157  RAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYD----RYRESQVVQLAYTHELP 210
                 ++ +  ++ +  +   ++    +Y NL ++   D    +   + ++ +A      
Sbjct: 691  ELARTSTLENLKQAISFYDYIEIQPISVYKNLLQNDSLDLDQLKQVITNIINIAKQENKL 750

Query: 211  LVATNNSLFLSEEDYEAHDV------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
            ++A+++  + + E  +  +V      L  + H  +    ++ +  PD YL+  +EM+  F
Sbjct: 751  IIASSDCHYTNPELKQIREVYINAKGLGGIRH-PLFDFNNKVKDYPDQYLRTTNEMLEEF 809

Query: 265  SDLPEA---LENTVEIARRCSFILQVHA-PILPRFIEKECDDIQKEEENELRNKAVAGLE 320
            S L +     E  V  + + + ++ ++  PI       +  ++      +L++K     +
Sbjct: 810  SWLEDENLIYEIVVINSNKINEMIDINVIPIKDGLFTPKIANVN----EKLKDKCYQTAK 865

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                +             +RL+ EL  I +  F+  + I    ++ +  +   VG  RGS
Sbjct: 866  QMYGENL------PDIVEKRLEKELGSITKHGFAIVYWISHLLVKQSYDDGYLVG-SRGS 918

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S  A    IT+++PL+                                         
Sbjct: 919  VGSSFVATMAQITEVNPLKAHYRCLNCKYSDFDTDPTYKCGYDLPTKNCPNCNQKLIGDG 978

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL  D   +PD D++F  + +++   + +  +G   V +  T  ++  K A  
Sbjct: 979  HDIPFETFLGFDGDKVPDIDLNFSGEYQNQAHNFTKKMFGENNVFRAGTISTVAEKTAFG 1038

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V                            +    D+         P    +  +++  +
Sbjct: 1039 YVK------------------------TYFEETKKDTNL-------PRKTEINRLAKLAQ 1067

Query: 520  GLYRHASTHAAGIVIGDRP--LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H  GI+I      +    P+     D+ S    T F+   I    L+K D L
Sbjct: 1068 GVKRTTGQHPGGIIILPNEYEIEDFTPVNYPADDLSSTWKTTHFDFHSIHD-NLLKMDIL 1126

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT---------------KGTLG 619
            G    T L+   D        +D   IP DD   Y L ++                G +G
Sbjct: 1127 GHDDPTALRMLRDL-----TNIDPITIPTDDKNVYSLFSSLQALNLTSDKINDEITGAIG 1181

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            I +  +  +R  L   +P    D++ +  L       ++ + N R            LI 
Sbjct: 1182 IPEFGTGFVRNMLRETKPKTFADLVQISGLSHGT---DVWLGNAR-----------DLIK 1227

Query: 680  PMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
                    VI  ++ +M     +      +    + +R+  G K KE +D  K       
Sbjct: 1228 DNKANISTVIGCRDDIMVYLINIGLESSLAFMIMESVRKGKGLK-KEWIDIMK------- 1279

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             K+ I      +  ++      Y F K+HA AY +++Y+ AW K +YP E+ A  ++ + 
Sbjct: 1280 -KHNIPDWYIDSCLKI-----KYMFPKAHATAYVLMAYRIAWYKIYYPTEYYATYLSTKA 1333

Query: 797  D--------------------------NVEKIKKFCQD---ARQFNIQIMPPSVNTPCVD 827
            D                          N EK+ K  +D     +  +++   ++    +D
Sbjct: 1334 DVFDLKTALGGYESVLLKLKSQQQKVKNGEKLSKKEEDLEVVYEVLLEMFARNIKFSNID 1393

Query: 828  FKV-------------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
            F+                  I      I  +G   A  I+ A   KP  S+ D  +R  +
Sbjct: 1394 FEKSEATKFKVDVLNDNTKIIIPPFNVIDSLGEAVALSIINARNTKPITSVNDLKNRTQT 1453

Query: 875  KKLNRRVLESLVFAGALDCFGYS 897
             +   ++ E       LD     
Sbjct: 1454 TQTQIKIFEEF---NILDSLSVD 1473



 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           V L  H+  S+++G     + L+ I+     AIA TD  N+ +  +  + 
Sbjct: 339 VELHAHTKMSVMDGVSDPIDYLELISNWNHKAIAFTDHTNVQAFPDIYKA 388


>gi|313899185|ref|ZP_07832705.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            sp. HGF2]
 gi|312956008|gb|EFR37656.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            sp. HGF2]
          Length = 1448

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 151/912 (16%), Positives = 299/912 (32%), Gaps = 186/912 (20%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK---------QSVRICLSWLQEIGTEG-L 144
             V  + +L     G + L ELV+  +                  RI  S +++    G L
Sbjct: 585  RVKHVTILAKNMAGLKELFELVTLSHTSYLAYSSKSTNNIVAEPRILRSEIEKRRINGNL 644

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-----KKLFGDRLYVNLQRHRGYDRYRESQ 199
            ++ +   +G +       + Q  E+ +  +     + L   R  V        +R +E  
Sbjct: 645  LIGSSCLNGEVFDMAQTRNEQTLEEVMQFYDYIELQPLENYRHLVERDSISSMERLKEIL 704

Query: 200  --VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH--------STVVSQKDRPRVT 249
              +V+ A   +  LVA+ +  ++   +    D+ ++                +K R    
Sbjct: 705  TCIVKAADKLDKLLVASGDCHYVQPGEKMIRDIYISSQAIGGVRHPLYIYNQEKRRKFKA 764

Query: 250  PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            PD + +   EM+  F+ L E  A +  ++  +R + ++    P+  R    + +      
Sbjct: 765  PDQHFRTTKEMLKEFAWLGEQRAYDMVIKNTKRIADMIGEVKPVKDRLYPPDIEG----S 820

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + +L +        +            +   +RL+ EL  I    F   + I    ++ +
Sbjct: 821  DQKLTDICYENAHKKYGP------VLPEIVEKRLEKELASIIGHGFYVVYYISHLLVKKS 874

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPL----------------------------- 398
              +   VG  RGS   S  A    IT+++PL                             
Sbjct: 875  LNDGYLVG-SRGSVGSSFVATMSEITEVNPLAPHYVCPKCHYVKFYTDGSVADGFDLPDI 933

Query: 399  ------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL  +   +PD D++F  D +     Y +  +G + V + 
Sbjct: 934  ICPNCGETIRGDGHDIPFETFLGFEGDKVPDIDLNFSGDYQPNAHAYTKEVFGDDHVYRA 993

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  + A   V                            +   ++     +     
Sbjct: 994  GTIGTVATQTAFGYV----------------------------KGYEEEMGIEGSMRN-- 1023

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMY---RDVRSDLPVTQFNMK 561
               ++L +++  EG+ R    H  GI++    L      P+     +  ++   T F   
Sbjct: 1024 --AQVLHLAKGCEGVKRTTGQHPGGIIVIPLDLDVHDFTPVQYPANNPYAEWKTTHFEFH 1081

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I    ++KFD LG    T ++       +R   +D + IP +D ET  + +    L I 
Sbjct: 1082 DIHD-NVLKFDILGHVDPTAMKML-----ERMSGIDPTTIPMNDPETMSVFSKVDALKID 1135

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDP 680
              +S        G+       +  ++ L RP   D ++  +   +G +  + +   LID 
Sbjct: 1136 TSKS-CEETGAAGLPEFGTPFVRGILELTRPTTFDELLKISGLSHGTDVWLGNAKDLIDN 1194

Query: 681  MLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
                 + VI  ++ +M       L    + +  + +R+  G K         + +I    
Sbjct: 1195 GTCTLKSVIGCRDDIMVYLLHKGLRPKLAFTIMESVRKGKGLK---------DEWIPEMK 1245

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             NG+      +  ++      Y F K+HA AY +++ + AW K H P  +     ++  D
Sbjct: 1246 ANGVEDWYIDSCLKI-----KYMFPKAHATAYVMMAIRIAWFKVHRPQVYYCMFFSIRCD 1300

Query: 798  NVEKIKKFCQ----------------------------------------DARQFNIQIM 817
              + I+   +                                        +         
Sbjct: 1301 AYD-IETMIKGEQAIRRRMQEISDMLKNNETKKDVSKKDKDTFNTLELALEMNLRGYYFT 1359

Query: 818  PPSVNTPC-VDFKVGDNR---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
               +      +F V       I     +I G+G   A  ++EA     F S ED   R  
Sbjct: 1360 NIDIMRSASREFIVDPENANYIIPPFTSIDGLGENVADTVVEARRQGAFLSKEDLQRRTA 1419

Query: 874  SKKLNRRVLESL 885
                  + +ES+
Sbjct: 1420 LSGTLVKKMESM 1431



 Score = 64.6 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA------LEFSQKACAA 65
           V L VH+  S ++G  ++   +D+  A    AIAITD   + +       +E   K    
Sbjct: 306 VELHVHTKLSEMDGVCNIEEYIDQANAWGMDAIAITDHLVVQAFPKAQHKVEAINKGRET 365

Query: 66  GIQPIIGCQLDI 77
             + I G ++++
Sbjct: 366 PFKMIYGLEMNM 377


>gi|42560899|ref|NP_975350.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
            SC str. PG1]
 gi|42492396|emb|CAE76992.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
            SC str. PG1]
 gi|301320644|gb|ADK69287.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            mycoides subsp. mycoides SC str. Gladysdale]
          Length = 1482

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 167/982 (17%), Positives = 320/982 (32%), Gaps = 212/982 (21%)

Query: 48   DTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
            D + L    E         I+ I     +    D +   +             +LV    
Sbjct: 586  DADILADIYERMLDETRKKIKIITDSDWNKI--DPINYADNLNYYKNKGFHTNILVKNQA 643

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQV 166
            G + L +LV++ +  +    S +I    L +I     L+      +  I      ++ + 
Sbjct: 644  GLKELYKLVTKSHTTN-FYSSPKIFKDDLIQIKQNNNLLFGASCVNSEIFELARTSTLEN 702

Query: 167  AEKRLLTFK--KLFGDRLYVNLQRHRGYD----RYRESQVVQLAYTHELPLVATNNSLFL 220
             ++ +  +   ++    +Y NL ++   D    +   + ++ +A      +VA+++  + 
Sbjct: 703  LKQAISFYDYIEVQPISVYKNLLQNDSLDLDQLKEIITNIINIAKQENKLVVASSDCHYT 762

Query: 221  SEEDYEAHDV------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE----- 269
            + E  +  +V      L  + H  +    +R +  PD +L+   EM+  F  L +     
Sbjct: 763  NPELKQIREVYINAKGLGGIRH-PLFDFNNRVKDYPDQHLRTTKEMLKEFEWLNDDDLIN 821

Query: 270  --ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
               + N+ +IA      +    PI       +  ++      +L++K     +    +  
Sbjct: 822  EIVITNSNKIADMIDSNVI---PIKDGLFTPKIANVN----EKLKDKCYQTAKQMYGEML 874

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                   +   +RL+ EL  I +  F+  + I    ++ +  +   VG  RGS   S  A
Sbjct: 875  ------PEIVEKRLEKELGSITKHGFAIVYWISHLLVKQSLDDGYLVG-SRGSVGSSFVA 927

Query: 388  YALTITDIDPLR-----------------------------------------FSLLFER 406
                IT+++PL+                                           + FE 
Sbjct: 928  TMAQITEVNPLKAHYRCLNCKYSDFNTDPAYKCGYDLPEKNCPNCNQKLIGDGHDIPFET 987

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL  +   +PD D++F  + +++   + +  +G   V +  T  ++  K A   V     
Sbjct: 988  FLGFNGDKVPDIDLNFSGEYQNQAHNFTKKMFGENNVFRAGTISTVAEKTAFGYVKTY-- 1045

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
              + +  R   L                           P    +  +++  +G+ R   
Sbjct: 1046 --FEETKRDASL---------------------------PRKTEINRLAKLAQGVKRTTG 1076

Query: 527  THAAGIVIGDR--PLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  GI+I      +    P+     D+ S    T F+   I    L+K D LG    T 
Sbjct: 1077 QHPGGIIILPNEYEIEDFTPVNYPADDLNSTWKTTHFDFHSIHD-NLLKMDILGHDDPTA 1135

Query: 582  LQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT---------------KGTLGIFQLESS 626
            L+   D        +D   IP DD   Y L ++                G +GI +  + 
Sbjct: 1136 LKMLRDL-----TNIDPITIPTDDKNVYSLFSSLQALNLTSDKINDEITGAIGIPEFGTG 1190

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
             +R  L+  QP    D++ +  L       ++ + N R            LI     +  
Sbjct: 1191 FVRNMLKETQPKTFADLVQISGLSHGT---DVWLGNAR-----------DLIKDKKADIS 1236

Query: 687  GVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             VI  ++ +M     +      +    + +R+  G K KE +D  K+  +          
Sbjct: 1237 TVIGCRDDIMVYLINMGLESSLAFMIMESVRKGKGLK-KEWIDVMKQYNVP--------- 1286

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD------ 797
                + +        Y F K+HA AY +++Y+ AW K +YP E+ A  +T   D      
Sbjct: 1287 ----DWYIDSCLKIKYMFPKAHATAYVLMAYRIAWYKIYYPTEYYATYLTTRADVFDLKT 1342

Query: 798  --------------------NVEKIKKF----------CQDARQFNIQIMPPSVNTP-CV 826
                                N EK+ K             +     I+            
Sbjct: 1343 VLGGYDAVLLKLKSQQQRVKNGEKLSKKEEDLEVVYEVLLEMFARGIKFSNIDFEKSEAT 1402

Query: 827  DFKVGDNRI-----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
             FKV   +            I  +G   A  I+ A   KP  S+ D  +R  + +   ++
Sbjct: 1403 KFKVDILQDNSKIIIPPFNVIDSLGEAVALSIINARNTKPITSVNDLKNRTQTTQTQIKI 1462

Query: 882  LESLVFAGALDCFGYSRMQLLQ 903
             E       LD           
Sbjct: 1463 FEEF---NILDSLSVDEQLAFD 1481



 Score = 58.8 bits (141), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           V L  H+  S+++G     + L+ I++    AIA TD  N+ +  +  + 
Sbjct: 341 VELHAHTKMSVMDGVSDPIDYLELISSWNHKAIAFTDHTNVQAFPDIYKA 390


>gi|19548814|gb|AAL90804.1| polymerase III subunit alpha [Escherichia coli]
          Length = 323

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 151/324 (46%), Positives = 220/324 (67%), Gaps = 13/324 (4%)

Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
            F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +
Sbjct: 1   EFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVI 60

Query: 459 RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
           RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++KL
Sbjct: 61  RDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKL 119

Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
           EG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+T
Sbjct: 120 EGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRT 179

Query: 579 LTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
           LT++  +L+ + +R        +D++ IP DD +++ +L    T  +FQLES GM+  ++
Sbjct: 180 LTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIK 239

Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQ 686
            +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E+I        H  + P+L+ T 
Sbjct: 240 RLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTY 299

Query: 687 GVIIYQEQVMQIAQLLSGYSLSEA 710
           G+I+YQEQVMQIAQ+LSGY+L  A
Sbjct: 300 GIILYQEQVMQIAQVLSGYTLGGA 323


>gi|256384095|gb|ACU78665.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            mycoides subsp. capri str. GM12]
 gi|256384927|gb|ACU79496.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            mycoides subsp. capri str. GM12]
 gi|296455696|gb|ADH21931.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic
            Mycoplasma mycoides JCVI-syn1.0]
          Length = 1482

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 169/982 (17%), Positives = 321/982 (32%), Gaps = 212/982 (21%)

Query: 48   DTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
            D + L    E         I+ I     +    D +   +             +LV    
Sbjct: 586  DADILADIYERMLDETRKKIKIITDSDWNKI--DPINYADNLNYYKNKGFHTNILVKNQA 643

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQV 166
            G + L +LV++ +  +      +I    L +I     L+      +  I      ++ + 
Sbjct: 644  GLKELYKLVTKSHTTN-FYAFPKIFKDDLIQIKQNNNLLFGASCVNSEIFELARTSTLEN 702

Query: 167  AEKRLLTFK--KLFGDRLYVNLQRHRGYD----RYRESQVVQLAYTHELPLVATNNSLFL 220
             ++ +  +   ++    +Y NL ++   D    +   + ++ +A      +VA+++  + 
Sbjct: 703  LKQAISFYDYIEIQPISVYKNLLQNDSLDLEQLKQIITNIINIAKQENKLIVASSDCHYT 762

Query: 221  SEEDYEAHDV------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE----- 269
            + E  +  +V      L  + H  +    +R +  PD +L+   EM++ F  L +     
Sbjct: 763  NPELKQIREVYINAKGLGGIRH-PLFDFNNRVKDYPDQHLRTTKEMLNEFEWLNDDDLIN 821

Query: 270  --ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
               + N+ +IA      +    PI       +  ++      +L++K     +    +  
Sbjct: 822  EIVITNSNKIADMIDSNVI---PIKDGLFTPKIANVN----EKLKDKCYQTAKQMYGEML 874

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                   +   +RL+ EL  I +  F+  + I    ++ +  +   VG  RGS   S  A
Sbjct: 875  ------PEIVEKRLEKELGSITKHGFAIVYWISHLLVKQSLDDGYLVG-SRGSVGSSFVA 927

Query: 388  YALTITDIDPLR-----------------------------------------FSLLFER 406
                IT+++PL+                                           + FE 
Sbjct: 928  TMAQITEVNPLKAHYRCLNCKYSDFNTDPTYKCGYDLPEKNCPDCNQKLIGDGHDIPFET 987

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL  D   +PD D++F  + +++   + +  +G   V +  T  ++  K A   V     
Sbjct: 988  FLGFDGDKVPDIDLNFSGEYQNQAHNFTKKMFGENNVFRAGTISTVAEKTAFGYV----- 1042

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
                      K    +    VSL                P    +  +++  +G+ R   
Sbjct: 1043 ----------KTYFEETKKDVSL----------------PRKTEINRLAKLAQGVKRTTG 1076

Query: 527  THAAGIVIGDRP--LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  GI+I      +    P+     D+ S    T F+   I    L+K D LG    T 
Sbjct: 1077 QHPGGIIILPNEYEIEDFTPVNYPADDLNSTWKTTHFDFHSIHD-NLLKMDILGHDDPTA 1135

Query: 582  LQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT---------------KGTLGIFQLESS 626
            L+   D        +D   IP DD   Y L ++                G +GI +  + 
Sbjct: 1136 LKMLRDL-----TNIDPITIPTDDKNVYSLFSSLQALNLTSDKINDEITGAIGIPEFGTG 1190

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
             +R  L+  QP    D++ +  L       ++ + N R            LI     +  
Sbjct: 1191 FVRNMLKETQPKTFADLVQISGLSHGT---DVWLGNAR-----------DLIKDKKADIS 1236

Query: 687  GVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             VI  ++ +M     +      +    + +R+  G K KE +D  K+  +          
Sbjct: 1237 TVIGCRDDIMVYLINMGLESSLAFMIMESVRKGKGLK-KEWIDVMKQYNVP--------- 1286

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD------ 797
                + +        Y F K+HA AY +++Y+ AW K +YP E+ A  +T   D      
Sbjct: 1287 ----DWYIDSCLKIKYMFPKAHATAYVLMAYRIAWYKIYYPTEYYATYLTTRADVFDLKT 1342

Query: 798  --------------------NVEKIKKF----------CQDARQFNIQIMPPSVNTP-CV 826
                                N EK+ K             +     I+            
Sbjct: 1343 ALGGYDAVLLKLKSQQQRVKNGEKLSKKEEDLEVVYEVLLEMFARGIKFSNIDFEKSEAT 1402

Query: 827  DFKVGDNRI-----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
             FKV   +            I  +G   A  I+ A   KP  S+ D  +R  + +   ++
Sbjct: 1403 KFKVDILQDNSKIIIPPFNVIDSLGEAVALSIINARNTKPITSVNDLKNRTQTTQTQIKI 1462

Query: 882  LESLVFAGALDCFGYSRMQLLQ 903
             E       LD           
Sbjct: 1463 FEEF---NILDSLSVDEQLAFD 1481



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           V L  H+  S+++G     + L+ I++    AIA TD  N+ +  +  + 
Sbjct: 341 VELHAHTKMSVMDGVSDPIDYLELISSWNHKAIAFTDHTNVQAFPDIYKA 390


>gi|218678990|ref|ZP_03526887.1| DNA polymerase III, alpha subunit [Rhizobium etli CIAT 894]
          Length = 443

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 131/443 (29%), Positives = 214/443 (48%), Gaps = 23/443 (5%)

Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
              L+D  +   L+++++L G  RH S H  G V+    L +LVP+     +D  V +++
Sbjct: 13  NLNLSDRRLRLALDLARQLMGAPRHLSQHPGGFVLTHDRLDELVPIEPAAMADRQVIEWD 72

Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTL 618
              I+    +K D L L  L+ +++ LD LA  +G+ +DL+ IP +D  TY ++    TL
Sbjct: 73  KDDIDTLRFMKVDVLALGMLSCMKRGLDMLADHKGINLDLATIPAEDPRTYAMIRRADTL 132

Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP 676
           G FQ+ES      L  ++P    D++  V++ RPGPI  D +  Y  R+ G E +V   P
Sbjct: 133 GTFQIESRAQMSMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRRREGLEPVVFPKP 192

Query: 677 LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISG 735
            ++ +L +T GV ++QEQ M++A   +G++  EAD+LR++M   K    +   KE+ I G
Sbjct: 193 ELEKVLGKTLGVPLFQEQAMRVAIECAGFTPGEADMLRKSMATFKFTGGVSSFKEKLIKG 252

Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              NG  +  A   F+ L  F  YGF +SHAA++A+I+Y +AW+K  +P  F AA +  +
Sbjct: 253 MVDNGYQRDFAEATFKQLEGFGSYGFPESHAASFALIAYASAWLKCWHPDVFCAALLNAQ 312

Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRIYYSLAAIKGVGTTT 849
                   +  +DA +  I I P   N    D  +          +   L  +KG+    
Sbjct: 313 PMGFYAPAQIVRDALEHGIDIRPVCANASRWDCTLEPTDDDSRFAVRLGLRMVKGLANAH 372

Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              I+ A AD+PF S++D   R     +    L  L  A A             +L   +
Sbjct: 373 GATIVGARADQPFASIDDLWRRA---GVPSAALVQLAEADAFR----------PALGLAR 419

Query: 910 KYAQWVEKNRTNKHENIFAHEKG 932
           + A W  K   ++   +FA    
Sbjct: 420 REALWAIKALRDEPLPLFAAASA 442


>gi|317495743|ref|ZP_07954108.1| DNA polymerase III [Gemella moribillum M424]
 gi|316914196|gb|EFV35677.1| DNA polymerase III [Gemella moribillum M424]
          Length = 1446

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 163/997 (16%), Positives = 327/997 (32%), Gaps = 213/997 (21%)

Query: 27   LSLNNIL------DKIAADQQPAIAITDTNNLFSA--LEFSQK---ACAAGIQPIIGCQL 75
             S++ +        +        +A      ++    ++  +      A     I     
Sbjct: 535  ASIDTLFISRAENKEAKRHGLSNLA-----KMYKVRLVQHHRAIYDTKATAEIFIKMLNQ 589

Query: 76   DIDM--QDNLKMTNQGKTPFPTVPSIVLLV----STAEGYQRLIELVSRMYLLDQGKQSV 129
               +  + + ++ N+    F    S           A+G + L  LVS            
Sbjct: 590  LYALGIERHNEIDNKIDLKFAHTRSRTFPCSILVKNAKGLKDLFRLVSYSCTEYLSSGKP 649

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I  S L++   + L++ +G S   +      +     E  +  +        Y+ +Q  
Sbjct: 650  TIPRSLLEQY-RQDLLIGSGNSENEVFEELLNSKEDKVESIIDFYD-------YIEIQPM 701

Query: 190  RGYDRYRESQVVQLAYTH--------------ELPLVATNNSLFLSEEDYEAHDVLMAVA 235
              Y+ +  ++ +                       +VAT +  +L E  +    +L    
Sbjct: 702  NHYESFITNERIADKTELEIILKKLISLSKKKGKIVVATGDCYYLDEYQHVYRQILRL-- 759

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHA 289
              +V +      + P        EM+  FS L +       +ENT +I+ +   ++ +  
Sbjct: 760  --SVKNNPGARDIKPMATFLTTEEMLEEFSFLDKELREEIVIENTHKISDKIELVVPLKD 817

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
             +    I+   D        E+RN + +       +         +   +RL+ EL  I 
Sbjct: 818  KLYTPNIKGAAD--------EVRNLSYSMAHKIYGEEL------PEIVEKRLEKELTSII 863

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------- 400
               FS  +LI    ++ +  +   VG  RGS   S+ A  + IT+++PL           
Sbjct: 864  GNGFSVVYLISHKLVKKSLDDGYLVG-SRGSVGSSLVATMMEITEVNPLAPHYVCPKCKH 922

Query: 401  --------------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                                             + FE FL  +   +PD D++F  + + 
Sbjct: 923  SEFFLNAEYASGFDLPNKNCPHCDVKMTKDGQDIPFETFLGFNGDKVPDIDLNFSGEYQA 982

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
                + +  +G + V +  T  ++  K A      +    Y + + + K         + 
Sbjct: 983  TAHNFTKEIFGEDYVYRAGTIATVAEKTAY-----SFTRDYYEKNEIEK-------RNID 1030

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY 546
            L+ I                      +   EG  R    H  GI++   D  +    P  
Sbjct: 1031 LERI----------------------AAGCEGAKRTTGQHPGGILVVPNDMDIFDFTPYQ 1068

Query: 547  RDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
                 +      T F+   I    ++KFD LG    T+++K  D        +D+S    
Sbjct: 1069 YPADDETSSWRTTHFDFHSIHD-NILKFDILGHDDPTMIRKLQDLSGINPKTIDVS---- 1123

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D E   + +    LG+ + E         G+       +I ++   +P     +V  + 
Sbjct: 1124 -DPEVMGIFSGVEALGVTR-EQVNSASGTFGIPEFGTNFVIQMLDDTKPTTYSELVQISG 1181

Query: 664  RKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGK 719
              +G +  + +   LI     E + VI  ++ +M          G + +  + +R+  G 
Sbjct: 1182 LSHGTDVWLGNAQELIRNGTCELKDVIGCRDDIMVYLIHAGLEEGLAFTIMESVRKGKG- 1240

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
                      E F +   +N +      +  ++      Y F K+HA AY +++ + AW 
Sbjct: 1241 --------LTEDFEAAMKENDVPAWYIDSCKKI-----KYMFPKAHACAYVLMALRIAWF 1287

Query: 780  KTHYPVEFLAASMTLEMDNVE-------------KIK---------------------KF 805
            K H P+ +  A  ++   + +             KI+                     + 
Sbjct: 1288 KVHQPLTYYCAYYSVRASDFDIITVVKGEKSLKAKIEEIKTTDKNELTAKDKDALVSYEI 1347

Query: 806  CQDARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
              +  +         +      D+ +  N +    + + G+G   A+ I++A  +KPF S
Sbjct: 1348 ANEMMERGFTFSKVDLEKSASHDYIMEGNTLIPPFSIVPGLGDNVAKKIVQARLEKPFLS 1407

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +EDF  R     ++  V+E L   G L      R QL
Sbjct: 1408 IEDFSKR---GSVSSTVVEYLREMGTLKGL-PERAQL 1440



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H+  S LEG  +  + L +  A    AIA TDT  + +  E    +    I+PI 
Sbjct: 340 IELNTHTKMSQLEGISTAKDYLARALAWGHEAIAFTDTYGVQAYPEICLGSKGKDIKPIY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G    I        TN  K        +V  V T
Sbjct: 400 GLNAFIMDDSITATTNPKKLKLREATYVVFDVET 433


>gi|169824428|ref|YP_001692039.1| DNA polymerase III subunit alpha [Finegoldia magna ATCC 29328]
 gi|167831233|dbj|BAG08149.1| DNA polymerase III alpha subunit [Finegoldia magna ATCC 29328]
          Length = 1421

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 177/965 (18%), Positives = 325/965 (33%), Gaps = 214/965 (22%)

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLK-----MTNQGKTPFPTVPSIVLLVST 105
            NLF+       A A G   I                   M +          +  +    
Sbjct: 539  NLFNHHRACDDARATGEVFICMVNNLEQRGFKFDININQMDSDWSISKRESHTATIYAKN 598

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSS 164
              G + L +LV+   L     +   I  S L +   EGL++ +G  +G + +A   F S 
Sbjct: 599  LIGLKNLYKLVTASNLK-YFSREGGIPKSELNK-RREGLVIGSGNENGELIKAILSFESD 656

Query: 165  QVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVVQLAYTHELP 210
            +  ++ +  +        ++ +Q    YD                   ++  L+  H   
Sbjct: 657  EKIDEIISRYD-------FLEVQPPLYYDGVKSKSMSFNLRSCEELTRKLYDLSLKHNKL 709

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
            LVA + + +  +EDY   ++++      +  +K      P  + +   EM++ F  L + 
Sbjct: 710  LVADSYAKYFEKEDYIFRNIILEGQPRKIYGEK-----FPTLFFRTTDEMMNEFGFLEKN 764

Query: 271  LENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
            +   + I    + S +L+   PI     +     + +  + ELR                
Sbjct: 765  VAEEIVIDNTIKISEMLEEIKPI----PDGTFPPVIEGSDTELREMTYKKARSIYGDDL- 819

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                  +    RL+ EL+ I    ++  ++I    ++ + ++   VG  RGS   S  A 
Sbjct: 820  -----PEIVESRLERELSSIISNGYAVLYIIAQKLVKKSNEDGYLVG-SRGSVGSSFVAT 873

Query: 389  ALTITDIDPL-----------------------------------------RFSLLFERF 407
               IT+++PL                                           ++ FE F
Sbjct: 874  MADITEVNPLIPHYICENCKHSEFIHDENIGSGVDLDDKICPVCGKPLKKEGHNIPFEVF 933

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            L  D    PD D++F  + +  V +Y +  +G  +V +  T G++  K A   + +    
Sbjct: 934  LGFDGDKEPDIDLNFAGEYQPTVHKYTEELFGEGKVFRAGTIGTISDKTAYGYIKKYF-- 991

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                                           +   + +  +  L    + + G+ R +  
Sbjct: 992  -----------------------------EDKNEYVNNSEIKYLQ---RGILGVKRTSGQ 1019

Query: 528  HAAGIVIG--DRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            H  G++I   D+ +    P+     DV SD+  T FN K I    ++K D LG    T++
Sbjct: 1020 HPGGVMIVPRDKDIEDFCPVQHPADDVNSDIITTHFNYKSI-SGRILKLDLLGHDVPTII 1078

Query: 583  QKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLESSGM 628
            +   D        VD   IP DD ET  + ++                TLGI +  ++ +
Sbjct: 1079 KMLSDMTG-----VDPLTIPMDDKETMSIFSSIDALHFEELIDGLDIGTLGIPEFGTNFV 1133

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            R  L    P    +++ +  L       N+ + N +            LI   + E +  
Sbjct: 1134 RGMLRDTTPKTFSELVRISGLSHGT---NVWLNNAQ-----------DLIRDGVVELKDT 1179

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I  ++ +M                L +    KI E +  +K R +   + N + +    +
Sbjct: 1180 ICTRDDIMIYLINKG---------LEKKKSFKIMETV--RKNRVLDDDTLNYMIQNGVPD 1228

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS----------------- 791
             +    K  +Y F K+HA AY ++SY+ A+ K HYP  F +                   
Sbjct: 1229 WYIESCKTIEYLFPKAHAVAYVMMSYRIAYFKVHYPEAFYSTFFTIKLQDYPGDVIVRGL 1288

Query: 792  --------------------MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC-VDFKV 830
                                MT +  N   + +  ++     I+     +       FKV
Sbjct: 1289 SAIREEMQYLKDKYKESNSKMTAKDSNKYSVLEVAEEMYCRGIKQSRVDLYKSDKARFKV 1348

Query: 831  GDNRIY-YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +         A++GV    +  I E      F S +DF  R    K+N+  LE L   G
Sbjct: 1349 LEKGFIQPPFNALEGVSDANSIAIFEEIQKGDFISKQDFAVRT---KVNKTALEILENHG 1405

Query: 890  ALDCF 894
             LD  
Sbjct: 1406 VLDGL 1410



 Score = 65.8 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 2/107 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L ++S  S L+G + L+     +      A+ +TD + +    +        G++P+ 
Sbjct: 317 VELHMYSQMSQLDGFIDLDECCKTLKKWGHSALGLTDKSVVQGYPQLYDACSNNGLKPLF 376

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
           G +  I ++D+ ++             +V  + T  G     E ++ 
Sbjct: 377 GMEAKI-LEDDFRIITNPYDSMNLREFVVFDIET-TGLSNATEKITE 421


>gi|302380708|ref|ZP_07269173.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
            magna ACS-171-V-Col3]
 gi|302311651|gb|EFK93667.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
            magna ACS-171-V-Col3]
          Length = 1421

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 176/965 (18%), Positives = 324/965 (33%), Gaps = 214/965 (22%)

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLK-----MTNQGKTPFPTVPSIVLLVST 105
            NLF+       A A G   I                   M +          +  +    
Sbjct: 539  NLFNHHRACDDARATGEVFICMVNNLEQRGFKFDININQMDSDWSISKRESHTATIYAKN 598

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSS 164
              G + L +LV+   L     +   I  S L +   EGL++ +G  +G + +A   F S 
Sbjct: 599  LIGLKNLYKLVTASNLK-YFSREGGIPKSELNK-RREGLVIGSGNENGELIKAILSFESD 656

Query: 165  QVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVVQLAYTHELP 210
            +  ++ +  +        ++ +Q    YD                   ++  L+  H   
Sbjct: 657  EKIDEIISRYD-------FLEVQPPLYYDGVKSKSMSFNLRSCEELTRKLYNLSLKHNKL 709

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
            LVA + + +  +EDY   ++++      +  +K      P  + +   EM++ F  L + 
Sbjct: 710  LVADSYAKYFEKEDYIFRNIILEGQPRKIYGEK-----FPTLFFRTTDEMMNEFVFLEKN 764

Query: 271  LENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
            +   + I    + S + +   PI     +     + +  + ELR                
Sbjct: 765  VAEEIVIDNTIKISEMFEEIKPI----PDGTFPPVIEGSDTELREMTYKKARSIYGDDL- 819

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                  +    RL+ EL+ I    ++  ++I    ++ + ++   VG  RGS   S  A 
Sbjct: 820  -----PEIVESRLERELSSIISNGYAVLYIIAQKLVKKSNEDGYLVG-SRGSVGSSFVAT 873

Query: 389  ALTITDIDPL-----------------------------------------RFSLLFERF 407
               IT+++PL                                           ++ FE F
Sbjct: 874  MADITEVNPLIPHYICENCKHSEFIHDENIGSGVDLDDKICPECGKPLKKEGHNIPFEVF 933

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            L  D    PD D++F  + +  V +Y +  +G  +V +  T G++  K A   + +    
Sbjct: 934  LGFDGDKEPDIDLNFAGEYQPTVHKYTEELFGEGKVFRAGTIGTISDKTAYGYIKKYF-- 991

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                                           +   + +  +  L    + + G+ R +  
Sbjct: 992  -----------------------------EDKNEYVNNSEIKYLQ---RGILGVKRTSGQ 1019

Query: 528  HAAGIVIG--DRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            H  G++I   D+ +    P+     DV SD+  T FN K I    ++K D LG    T++
Sbjct: 1020 HPGGVMIVPRDKDIEDFCPVQHPADDVNSDIITTHFNYKSI-SGRILKLDLLGHDVPTII 1078

Query: 583  QKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLESSGM 628
            +   D        VD   IP DD ET  + ++                TLGI +  ++ +
Sbjct: 1079 KMLSDMTG-----VDPLTIPMDDKETMSIFSSIDALHFEELIDGLDIGTLGIPEFGTNFV 1133

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            R  L    P    +++ +  L       N+ + N +            LI   + E +  
Sbjct: 1134 RGMLRDTTPKTFSELVRISGLSHGT---NVWLNNAQ-----------DLIRDGVVELKDT 1179

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I  ++ +M                L +    KI E +  +K R +   + N + +    +
Sbjct: 1180 ICTRDDIMIYLINKG---------LEKKKSFKIMETV--RKNRVLDDDTLNYMIQNGVPD 1228

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS----------------- 791
             +    K  +Y F K+HA AY ++SY+ A+ K HYP  F +                   
Sbjct: 1229 WYIESCKTIEYLFPKAHAVAYVMMSYRIAYFKVHYPEAFYSTFFTIKLQDYPGDVIVRGL 1288

Query: 792  --------------------MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC-VDFKV 830
                                MT +  N   + +  ++     I+     +       FKV
Sbjct: 1289 SAIREEMQSLKDKYKESNSKMTAKDSNKYSVLEVAEEMYCRGIKQSRVDLYKSDKARFKV 1348

Query: 831  GDNRIY-YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +         A++GV    +  I E      F S +DF  R    K+N+  LE L   G
Sbjct: 1349 LEKGFIQPPFNALEGVSDANSIAIYEEIQKGDFISKQDFADRT---KVNKTALEILENHG 1405

Query: 890  ALDCF 894
             LD  
Sbjct: 1406 VLDGL 1410



 Score = 65.8 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 2/107 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L ++S  S L+G + L+     +      A+ +TD + +    +        G++P+ 
Sbjct: 317 VELHMYSQMSQLDGFIDLDECCKTLKKWGHSALGLTDKSVVQGYPQLYDACSNNGLKPLF 376

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
           G +  I ++D+ ++             +V  + T  G     E ++ 
Sbjct: 377 GMEAKI-LEDDFRIITNPYDSMNLREFVVFDIET-TGLSNATEKITE 421


>gi|110004377|emb|CAK98715.1| probable dna polymerase III alpha subunit protein [Spiroplasma citri]
          Length = 1453

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 163/979 (16%), Positives = 311/979 (31%), Gaps = 192/979 (19%)

Query: 36   IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
                   AI +TD                  ++ +I         D   + +        
Sbjct: 555  AHRGDYDAIVLTDI-------------YEHQLRKMINNYGIEFDNDIENIHDPAVYKKLR 601

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
               + +L     G   L +L++  +       S ++  S + E     L++ +   +G +
Sbjct: 602  PKHMAILAKNQAGLLELFKLITSAHTK-YFYSSPKLLRSVI-EQHRSNLLIGSSCVNGDV 659

Query: 156  DRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQVVQ----LAYTHEL 209
                   +     + +  +   ++    +Y +L +       R   V++     A     
Sbjct: 660  FEVARNKNLSELRETIKFYDYIEVQPPSVYKHLVQMGDLSEERLLTVIKDIVFTAKELNK 719

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAH-----STVVSQKDRPRVTPDHYLKNRSEMVSIF 264
             +VAT +  +L+ ED    +V +           +   K R    PD +L+   EM++ F
Sbjct: 720  LVVATGDVHYLNPEDKIFREVYINAKGIGGRPHPLYDYKKRVTDNPDQFLRTTMEMMNEF 779

Query: 265  SDLPE---ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
              L +     E  V      S  ++    I  +    + +      +  L+         
Sbjct: 780  KFLNDDELIYEIVVTNPNLISDQIEKVEIIKDKLYTPKIEG----SDQLLKELCYQNAYK 835

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
                  I      +    RL+ ELN I +  F+  + I    +  + ++   VG  RGS 
Sbjct: 836  ------IYGNPLPKIVASRLERELNAIIKHGFAVIYWIAHKLVDKSLQDGYLVG-SRGSV 888

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL+                                          
Sbjct: 889  GSSFVATMSNITEVNPLQPHYLCSYCSYSEFIVDGSVKCGYDLSARTCPKCQKPLKGEGH 948

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL  +   +PD D++F  + +     + +  +G   V +  T  ++  K A   
Sbjct: 949  DIPFETFLGFEADKVPDIDLNFSGEYQPIAHDFTKEMFGERSVYRAGTISTVAEKTAYGY 1008

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V    +          K I       + L+  A+  R                I++  EG
Sbjct: 1009 VKGYFE---------SKNI-------LHLKRRAELER----------------IAKGCEG 1036

Query: 521  LYRHASTHAAGIVIGDRP--LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + R    H  GIV+      +    P+     D++S+   T F+   I    ++K D LG
Sbjct: 1037 VKRTTGQHPGGIVVIPNEYEVEAFTPVNFPADDIKSNWLTTHFDFHAIHD-NVLKLDILG 1095

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
                T L+   D        VD   IP +D     L  +   L I   + +G +    G+
Sbjct: 1096 HVDPTALRMLQDLTG-----VDPKTIPTNDEAVLSLFRSLDVLNIKPEDINGEKTGAIGI 1150

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE-KIVSIHPLIDPMLKETQGVIIYQEQ 694
                   +  ++   +P    ++V  +   +G +  I +   LI         VI  ++ 
Sbjct: 1151 PEFGTFFVRKMLLDTKPTSFADLVQISGLSHGTDVWIGNAQELIRNQNISISEVIGCRDD 1210

Query: 695  VM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            +M       L +  +    + +R+   K +  E ++             +        + 
Sbjct: 1211 IMVNLIYKGLPAQSAFKIMEDVRKG--KGLTAEHEQL------------MRDNNVEQWYI 1256

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------- 800
                   Y F K+HA AY +++++ AW K +YPVE+ A   +   D  +           
Sbjct: 1257 DSCNKIKYMFPKAHATAYVLMAWRVAWYKINYPVEYYATFFSTRTDVFDIKTILKGAETI 1316

Query: 801  ------------------------------KIKKFCQDARQFNIQIMPPSVNTP-CVDFK 829
                                           + +   +     I++    + T    +F 
Sbjct: 1317 KQVLRDIQTRLDNKDFNAPNKPTQKEKDLIPVYEIALEMYARGIKMSNIDLKTSRNKNFT 1376

Query: 830  V-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            V      +  I    +AI G+G      I+ A  +KPF S+ D   R +  K +   LES
Sbjct: 1377 VITTENNEKIILPPFSAIDGLGGAVGDSIINARYEKPFLSVADLQKRTNITKAH---LES 1433

Query: 885  LVFAGALDCFGYSRMQLLQ 903
                G L           +
Sbjct: 1434 FEELGILKDLSLDDQIAFE 1452



 Score = 54.6 bits (130), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-GIQPI 70
           + L +H+  S+++G   L  +   +      AIA TD  N+ +  E          I+ I
Sbjct: 323 IELHLHTKMSIMDGVTDLAMLFKTLQHWNHKAIAFTDHLNVQAYPEIYNLNKKYPDIKVI 382

Query: 71  IGC 73
            G 
Sbjct: 383 YGV 385


>gi|303233818|ref|ZP_07320472.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
            magna BVS033A4]
 gi|302495252|gb|EFL55004.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
            magna BVS033A4]
          Length = 1421

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 177/965 (18%), Positives = 325/965 (33%), Gaps = 214/965 (22%)

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLK-----MTNQGKTPFPTVPSIVLLVST 105
            NLF+       A A G   I                   M +          +  +    
Sbjct: 539  NLFNHHRACDDARATGEVFICMVNNLEQRGFKFDININQMDSDWSISKRESHTATIYAKN 598

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSS 164
              G + L +LV+   L     +   I  S L +   EGL++ +G  +G + +A   F S 
Sbjct: 599  LIGLKNLYQLVTASNLK-YFSREGGIPKSELNK-RREGLVIGSGNENGELIKAILSFESD 656

Query: 165  QVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVVQLAYTHELP 210
            +  ++ +  +        ++ +Q    YD                   ++  L+  H   
Sbjct: 657  EKIDEIISRYD-------FLEVQPPLYYDGVKSKSMSFNLRSCEELTRKLYNLSLKHNKL 709

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
            LVA + + +  +EDY   ++++      +  +K      P  + +   EM++ F  L + 
Sbjct: 710  LVADSYAKYFEKEDYIFRNIILEGQPRKIYGEK-----FPTLFFRTTDEMMNEFVFLEKN 764

Query: 271  LENTVEIAR--RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
            +   + I    + S +L+   PI     +     + +  + ELR                
Sbjct: 765  VAEEIVIDNTIKISEMLEEIKPI----PDGTFPPVIEGSDTELREMTYKKARSIYGDDL- 819

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                  +    RL+ EL+ I    ++  ++I    ++ + ++   VG  RGS   S  A 
Sbjct: 820  -----PEIVESRLERELSSIISNGYAVLYIIAQKLVKKSNEDGYLVG-SRGSVGSSFVAT 873

Query: 389  ALTITDIDPL-----------------------------------------RFSLLFERF 407
               IT+++PL                                           ++ FE F
Sbjct: 874  MADITEVNPLIPHYICENCKHSEFIHDENIGSGVDLDDKICPECGKPLKKEGHNIPFEVF 933

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            L  D    PD D++F  + +  V +Y +  +G  +V +  T G++  K A   + +    
Sbjct: 934  LGFDGDKEPDIDLNFAGEYQPTVHKYTEELFGEGKVFRAGTIGTISDKTAYGYIKKYF-- 991

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                                           +   + +  +  L    + + G+ R +  
Sbjct: 992  -----------------------------EDKNEYVNNSEIKYLQ---RGILGVKRTSGQ 1019

Query: 528  HAAGIVIG--DRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            H  G++I   D+ +    P+     DV SD+  T FN K I    ++K D LG    T++
Sbjct: 1020 HPGGVMIVPRDKDIEDFCPVQHPADDVNSDIITTHFNYKSI-SGRILKLDLLGHDVPTII 1078

Query: 583  QKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLESSGM 628
            +   D        VD   IP DD ET  + ++                TLGI +  ++ +
Sbjct: 1079 KMLSDMTG-----VDPLTIPMDDKETMSIFSSIDALHFEELIDGLDIGTLGIPEFGTNFV 1133

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            R  L    P    +++ +  L       N+ + N +            LI   + E +  
Sbjct: 1134 RGMLRDTTPKTFSELVRISGLSHGT---NVWLNNAQ-----------DLIRDGVVELKDT 1179

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I  ++ +M                L +    KI E +  +K R +   + N + +    +
Sbjct: 1180 ICTRDDIMIYLINKG---------LEKKKSFKIMETV--RKNRVLDDDTLNYMIQNGVPD 1228

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS----------------- 791
             +    K  +Y F K+HA AY ++SY+ A+ K HYP  F +                   
Sbjct: 1229 WYIESCKTIEYLFPKAHAVAYVMMSYRIAYFKVHYPEAFYSTFFTIKLQDYPGDVIVRGL 1288

Query: 792  --------------------MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC-VDFKV 830
                                MT +  N   + +  ++     I+     +       FKV
Sbjct: 1289 SAIREEMQSLKDKYKESNSKMTAKDSNKYSVLEVAEEMYCRGIKQSRVDLYKSDKARFKV 1348

Query: 831  GDNRIY-YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +         A++GV    +  I E      F S +DF  R    K+N+  LE L   G
Sbjct: 1349 LEKGFIQPPFNALEGVSDANSIAIYEEIQKGDFISKQDFADRT---KVNKTALEILENHG 1405

Query: 890  ALDCF 894
             LD  
Sbjct: 1406 VLDGL 1410



 Score = 65.8 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 2/107 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L ++S  S L+G + L+     +      A+ +TD + +    +        G++P+ 
Sbjct: 317 VELHMYSQMSQLDGFIDLDECCKTLKKWGHSALGLTDKSVVQGYPQLYDACSNNGLKPLF 376

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
           G +  I ++D+ ++             +V  + T  G     E ++ 
Sbjct: 377 GMEAKI-LEDDFRIITNPYDSMNLREFVVFDIET-TGLSNATEKITE 421


>gi|331703357|ref|YP_004400044.1| DNA polymerase III subunit alpha [Mycoplasma mycoides subsp. capri LC
            str. 95010]
 gi|328801912|emb|CBW54065.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. capri LC
            str. 95010]
          Length = 1482

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 168/982 (17%), Positives = 324/982 (32%), Gaps = 212/982 (21%)

Query: 48   DTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
            D + L    E         I+ I     +    D +  T+             +LV    
Sbjct: 586  DADILADIYERMLDETRKKIKIITDSDWNKI--DPINYTDNLNYYKNKGFHTNILVKNQA 643

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQV 166
            G + L +LV++ +  +      +I    L +I     L+      +  I      ++ + 
Sbjct: 644  GLKELYKLVTKSHTTN-FYAFPKIFKDDLIQIKQNNNLLFGASCVNSEIFELARTSTLEN 702

Query: 167  AEKRLLTFK--KLFGDRLYVNLQRHRGYD----RYRESQVVQLAYTHELPLVATNNSLFL 220
             ++ +  +   ++    +Y NL ++   D    +   + ++ +A      +VA+++  + 
Sbjct: 703  LKQAISFYDYIEIQPISVYKNLLQNDSLDLDQLKQIITNIINIAKQENKLVVASSDCHYT 762

Query: 221  SEEDYEAHDV------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE----- 269
            + E  +  +V      L  + H  +    +R +  PD +L+   EM+  F  L +     
Sbjct: 763  NPELKQIREVYINAKGLGGIRH-PLFDFNNRVKDYPDQHLRTTKEMLKEFEWLNDDDLIN 821

Query: 270  --ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
               + N+ +IA      +    PI       +  ++      +L++K     +    +  
Sbjct: 822  EIVITNSNKIADMIDSNVI---PIKDGLFTPKIANVN----EKLKDKCYQTAKQMYGE-- 872

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                   +   +RL+ EL  I +  F+  + I    ++ +  +   VG  RGS   S  A
Sbjct: 873  ----TLPEIVEKRLEKELGSITKHGFAIVYWISHLLVKQSLDDGYLVG-SRGSVGSSFVA 927

Query: 388  YALTITDIDPLR-----------------------------------------FSLLFER 406
                IT+++PL+                                           + FE 
Sbjct: 928  TMAQITEVNPLKAHYRCLNCKYSDFNTDPTYKCGYDLPEKNCPNCNQKLIGDGHDIPFET 987

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL  D   +PD D++F  + +++   + +  +G   V +  T  ++  K A   V     
Sbjct: 988  FLGFDGDKVPDIDLNFSGEYQNQAHNFTKKMFGENNVFRAGTISTVAEKTAFGYV----- 1042

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
                                   +   ++++   +      ++RL +++Q   G+ R   
Sbjct: 1043 -----------------------KTYFEETKKDASLPRKTEINRLAKLAQ---GVKRTTG 1076

Query: 527  THAAGIVIGDRP--LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  GI+I      +    P+     D+ S    T F+   I    L+K D LG    T 
Sbjct: 1077 QHPGGIIILPNEYEMEDFTPVNYPADDLSSTWKTTHFDFHSIHD-NLLKMDILGHDDPTA 1135

Query: 582  LQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT---------------KGTLGIFQLESS 626
            L+   D        +D   IP DD   Y L ++                G +GI +  + 
Sbjct: 1136 LKMLRDL-----TNIDPITIPTDDKNVYSLFSSLQALNLTSDKINDEITGAIGIPEFGTG 1190

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
             +R  L+  QP    D++ +  L       ++ + N R            LI     +  
Sbjct: 1191 FVRNMLKETQPKTFADLVQISGLSHGT---DVWLGNAR-----------DLIKDKKADIS 1236

Query: 687  GVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             VI  ++ +M     +      +    + +R+  G K KE +D  K+  +          
Sbjct: 1237 TVIGCRDDIMVYLINMGLESSLAFMIMESVRKGKGLK-KEWIDIMKQYNVP--------- 1286

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD------ 797
                + +        Y F K+HA AY +++Y+ AW K +YP E+ A  +T   D      
Sbjct: 1287 ----DWYIDSCLKIKYMFPKAHATAYVLMAYRIAWYKIYYPTEYYATYLTTRADVFDLKT 1342

Query: 798  --------------------NVEKIKKF----------CQDARQFNIQIMPPSVNTP-CV 826
                                N EK+ K             +     I+            
Sbjct: 1343 ALGGYDAVLLKLKSQQQRVKNGEKLSKKEEDLEVVYEVLLEMFARGIKFSNIDFEKSEAT 1402

Query: 827  DFKVGDNRI-----YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
             FKV   +            I  +G   A  I+ A   KP  S+ D  +R  + +   ++
Sbjct: 1403 KFKVDILQDNSKIIIPPFNVIDSLGEAVALSIINARNTKPITSVNDLKNRTQTTQTQIKI 1462

Query: 882  LESLVFAGALDCFGYSRMQLLQ 903
             E       LD           
Sbjct: 1463 FEEF---NILDSLSVDEQLAFD 1481



 Score = 58.8 bits (141), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           V L  H+  S+++G     + L+ I++    AIA TD  N+ +  +  + 
Sbjct: 341 VELHAHTKMSVMDGVSDPIDYLELISSWNHKAIAFTDHTNVQAFPDIYKA 390


>gi|227486439|ref|ZP_03916755.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235620|gb|EEI85635.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
          Length = 1463

 Score =  379 bits (974), Expect = e-102,   Method: Composition-based stats.
 Identities = 173/958 (18%), Positives = 327/958 (34%), Gaps = 206/958 (21%)

Query: 36   IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD-NLKMTNQGKTPFP 94
                  PA         F+    S  A A     I   ++ ++ +  NL   N+ KT +P
Sbjct: 579  ARKLDIPA---------FNHHRASDDARATAQIFIKMYKMIMEEEGLNLSKINRLKTNYP 629

Query: 95   TVPS----IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGG 150
                     +       G + L +L+S   +        R  +S L++   EGL++ TGG
Sbjct: 630  KAKHETFSALAFAKDKTGLKNLYKLISESRMNYMANGEARTPMSVLEKY-REGLVLGTGG 688

Query: 151  SSGPIDRAFFFNSSQVAEKRLLT---FKKLFGDRLYVNLQRHRGYD-----RYRESQVVQ 202
            + G +      + S++  K++L    F ++    ++++       D     +    +++ 
Sbjct: 689  AEGMLFEYILGDRSEMQIKKVLDLFDFYQVEPVSMFLDKVESGKIDSLAQVKEINQKIID 748

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
                    + AT    +L   DY+  +VL     S    +++RP      YL+   EM+ 
Sbjct: 749  FGEERGKLVAATGGVRYLDPGDYKLRNVLK--KGSFFFYKENRPLY----YLRTTDEMLG 802

Query: 263  IFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
             FS L +  A E  +   ++    L+   PI       +        E  LR+       
Sbjct: 803  EFSYLGDTKAYELVIRNPKKIVAGLEDIRPIPHGTFPPKIAG----SEEMLRDTCFKKAH 858

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                          +  + RLD EL+ I    ++  ++I    ++ + ++   VG  RGS
Sbjct: 859  EIYGDPL------PKIVQDRLDRELHSIISNGYAVLYIIAQKLVKKSNEDGYLVG-SRGS 911

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S  A    IT+++PL                                          
Sbjct: 912  VGSSFAATMADITEVNPLSPHYICPSCKHSEFFEEDLLGSGIDYPDKDCPVCGTPMHKDG 971

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
             ++ FE FL  +    PD D++F  + +  + +Y +  +G  +V +  T G +Q   A  
Sbjct: 972  HNIPFEVFLGFEGDKEPDIDLNFAGEYQPTIHKYTEVLFGEGKVFRAGTIGKIQDNTAFG 1031

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             + + +                                     L +  V +L    + L+
Sbjct: 1032 YIKKYM-------------------------------EENNLNLTNAQVRKLQ---RGLK 1057

Query: 520  GLYRHASTHAAGIVIGDRPL--SQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
             + R    H  G+++    +    + P+     D  S    T F  + +E+  L+K D L
Sbjct: 1058 DVKRSTGQHPGGLIVVPDDIEVFDICPIQYPADDPASGNKTTHFPYRVMEET-LLKLDLL 1116

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGI 620
            G    ++++   D         D   I  DD +   + +                GTLGI
Sbjct: 1117 GHDVPSVIRHLQDLTG-----TDPLKIKMDDKDVMKIFSCTEPLKIKHDFSNNDIGTLGI 1171

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  ++ +R  L+   P    ++  +  L       N+ + N +            +I  
Sbjct: 1172 PEFGTNFVRGMLKDTYPKKFSEMARISGLSHGT---NVWLNNAQ-----------DIIKS 1217

Query: 681  MLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
                   +I  ++ +M       L    S    + +R+  G   +EE+D  +E       
Sbjct: 1218 NTAGFNEIISTRDDIMNALIQEGLDKKKSFMIMEKVRKGKGL-SEEEIDYMRE------- 1269

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             NG+      +  ++      Y F K+HA AY ++SY+ A+ K +YP  F A+  + ++ 
Sbjct: 1270 -NGVKDWYIDSCLKI-----AYLFPKAHAVAYCLMSYRIAYYKVYYPEAFYASYFSSKLG 1323

Query: 798  NVE-------------KIKKF-------------------CQDARQFNIQIMPPSVNTP- 824
            +                +  +                    ++     I+I    +    
Sbjct: 1324 DFTYSTIISGLESVQMALNAYKEMFNISKRDQDLRTVLEVAEEMHAREIKISKADIYESD 1383

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
               F + D  I   LAA+  V    A+ I+E  A   F S+ED  SR    K   + L
Sbjct: 1384 ATKFLIKDGAILPPLAAVDDVSEAMAKDIVEERAKGDFISIEDLTSRTSVNKNALKSL 1441



 Score = 47.3 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           L     F  L++HS Y+ L+G +   ++L  +       I ITDT NL            
Sbjct: 350 LAADKRF-ELELHSKYTNLDGFVDDGDLLPVLKEWGWDTIGITDTENLQVLPYVYDTYKK 408

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
            GI+ + G +L +   D   +TN      PT  ++
Sbjct: 409 NGIRVLNGAELLLVEDDLRILTNLSGKDLPTFKNL 443


>gi|325681442|ref|ZP_08160968.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
            albus 8]
 gi|324106932|gb|EGC01222.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
            albus 8]
          Length = 1498

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 178/927 (19%), Positives = 317/927 (34%), Gaps = 199/927 (21%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
             V   ++LV    G + L +L+S   L    K+  RI  S L ++  EGLI+ +    G 
Sbjct: 639  DVYHQIILVRNNIGLKNLYKLISYSNLK-YFKRRPRIPKSELTKL-REGLILGSACERGE 696

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFG-----DRLYVNLQRHRGYDRYR--------ESQVV 201
            + +A+    S    K++ +F          + +++       YDR R           +V
Sbjct: 697  VIQAYLEGKSYDEIKQIASFYDYLEIQPDGNNMFMLTAEKPPYDRIRTEEDVKDINRFIV 756

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +L     +P+ AT +  FL+ ED +   ++ A    T              YLK+ ++M+
Sbjct: 757  RLGNDLGIPVCATGDVHFLNREDAKFRAIIQASMGFTDCDN------QAPLYLKSTNQML 810

Query: 262  SIFSDLPE------ALENTVEIARRCSFILQ-VHAPILPRFIEKECDDIQ---KEEENEL 311
               + L +       + NT  +A      L+         FIE    ++Q     +  EL
Sbjct: 811  DELAYLGKEKAYEVVVTNTNNVADMIDPDLKAFPVGTYTPFIEGAVYELQIICWRKACEL 870

Query: 312  RNKAVAG-LEVRLAQGAIAKGYHAQDYR----QRLDFELNVIARMKFSGYFLIVADFIQW 366
                    +EV   +      Y  +       +RL  EL+ I +  FS  ++I    + +
Sbjct: 871  YGDCDPMSIEVPEGEDVDVSAYFEEHVHPLVFKRLKRELDSIIKHGFSVLYMISQKLVAY 930

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            + +    VG  RGS   S  A    I++++PL                            
Sbjct: 931  SNQCGYQVG-SRGSVGSSFVASMSGISEVNPLEPHYICRKCHYSEFFENGEYGSGFDLPP 989

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL  D    PD D++F  D + +V +Y +  +G + V +
Sbjct: 990  KDCPNCGIPMHRDGHKIPFETFLGFDGDKAPDIDLNFSGDCQSKVHKYTEELFGEDHVFK 1049

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G +  K A   V + L                                  + R   
Sbjct: 1050 AGTIGKVADKTAYGYVKKYL----------------------------------DERGKT 1075

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVR---SDLPVTQFNM 560
                 +  +      + R  S H  G+V+      +    P+        SD+  T F+ 
Sbjct: 1076 ACPAEIQRLVNGCVDVKRTTSQHPGGMVVIPGDYEVYDFTPVQHPADKADSDMVTTHFDF 1135

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL-------- 612
              +    ++K D LG    T+ +   DF       +D++  P  D   Y L         
Sbjct: 1136 HSLHDT-ILKLDELGHDVPTMYKYLEDF-----THMDINECPMSDPAVYSLFTSPEALGV 1189

Query: 613  ------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
                     GTLGI ++ +  +R  L   +P    D++ +  L     +          N
Sbjct: 1190 KPEDIRCETGTLGIPEMGTPFVRGMLLESKPKNFSDLLQISGLSHGTDVWLG-------N 1242

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEM 725
             +E I +    I  ++     +++Y    +    L    +    ++ R+    K+  EEM
Sbjct: 1243 AQELIKNGTCDISNVIGTRDSIMVY----LLEHHLEPKLAFKIMEITRKGKAPKLLTEEM 1298

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             +           + + +    +  ++      Y F K+HAAAY   + +  W K H P+
Sbjct: 1299 KQ-------DMRAHDVPEWYIDSCLKI-----KYMFPKAHAAAYVTAAIRLCWFKVHEPL 1346

Query: 786  EFLAASMTLEMDNVE-------------KIKKF---------------------CQDARQ 811
             F A   T+  ++ +             KI K                        +   
Sbjct: 1347 AFYATYFTVRGEDFDAETTLKGIYMVRDKIDKLSNMSKEERSGKDSGVLDMLMLTNEMMS 1406

Query: 812  FNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
               + +P  +N      +++ D +I     AI GVG   A  I E +    F S+E+F S
Sbjct: 1407 RGYEFLPIDINKSHAFIYQIEDGKIRLPFCAINGVGVNAAIAIYEKAQKNDFISIEEFQS 1466

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYS 897
                  + + V+E+L   GA      S
Sbjct: 1467 ---DSGVTKAVVEALENIGAFGDLPKS 1490



 Score = 79.6 bits (195), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA---CAAG-- 66
           V L  H++ S+++   +   ++ K A     A+AITD   +    E   K      +G  
Sbjct: 357 VELHCHTNMSMMDALAAPEKLVAKAAGWGHRALAITDHGVVQGFPEAGNKCADIRKSGQE 416

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKT 91
            + I GC+      D        K 
Sbjct: 417 FKIIYGCEAYEVNNDARIFKGVDKR 441


>gi|642270|emb|CAA88043.1| DNA polymerase III [Staphylococcus aureus]
          Length = 1415

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/937 (17%), Positives = 315/937 (33%), Gaps = 208/937 (22%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +Q +    +    + N K++N+          + L+V   +G + L ++VS   L+    
Sbjct: 580  VQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVS-ASLVKYFY 638

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
            ++ RI  S L E   EGL++ T    G +  A         EK    +         L+ 
Sbjct: 639  RTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQ 697

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            D +   L R          +++    T  +P++AT N+ +L E D  A  +L+A      
Sbjct: 698  DLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNP 757

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            ++        P+ + +   EM++ F  L E  A E  V+     +  ++   PI      
Sbjct: 758  LN----RSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYT 813

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +        E+R  + A       +         Q    RL+ EL  I    F+  +
Sbjct: 814  PRMEGAN----EEIRELSYANARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIY 863

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF----------------- 400
            LI    ++ +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 864  LISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGS 922

Query: 401  ------------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE+FL      +PD D++F  + +     Y + 
Sbjct: 923  VGSGFDLPDKTCETCGAPLIKEGQDIPFEKFLGFKGDKVPDIDLNFSGEYQPNAHNYTKV 982

Query: 437  KYGHERVAQIITFGSLQAKAALRDVG-----RALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +G ++V +  T G++  K A   V      + +    +++DRL K   +          
Sbjct: 983  LFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKRGAEIDRLVKGYMDIYDFT----- 1037

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                        AD      +           H   H+         +   V        
Sbjct: 1038 -------PIQYPADDQNSAWM---------TTHFDFHS---------IHDNV-------- 1064

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
                             +K D LG    T+++   D        +D   IP DD E   +
Sbjct: 1065 -----------------LKLDILGHDDPTMIRMLQDL-----SGIDPKTIPVDDKEVMQI 1102

Query: 612  LTTKGTLGIFQLES-------------SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             +T  +LG+ + E                 RQ LE  +P    +++ +  L     +   
Sbjct: 1103 FSTPESLGVTEDEILCKTGTFGVPNSDRIRRQMLEDTKPTTFSELVQISGLSHGTDVWLG 1162

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
                          +   LI   + +   VI  ++ +M +  + +G   S A  +  ++ 
Sbjct: 1163 --------------NAQELIKTGICDLSSVIGCRDDIM-VYLMYAGLEPSMAFKIMESVR 1207

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K          E  I    +N +      +  ++      Y F K+HAAAY +++ + A+
Sbjct: 1208 KGK-----GLTEEMIETMKENEVPDWYLDSCLKI-----KYIFPKAHAAAYVLMAVRIAY 1257

Query: 779  MKTHYPVEFLAASMTLEMDNVE---------------------------------KIKKF 805
             K H+P+ + A+  T+   + +                                  + + 
Sbjct: 1258 FKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDVLTVLEI 1317

Query: 806  CQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
              +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA  D PF S
Sbjct: 1318 MNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEARDDGPFLS 1377

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             ED   +    +   +++E L   G+L      + QL
Sbjct: 1378 KEDLNKKAGLYQ---KIIEYLDELGSLPNL-PDKAQL 1410



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 393

Query: 72  GCQLD 76
           G +  
Sbjct: 394 GMEGM 398


>gi|295100646|emb|CBK98191.1| DNA polymerase III catalytic subunit, PolC type [Faecalibacterium
            prausnitzii L2-6]
          Length = 1417

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/945 (16%), Positives = 310/945 (32%), Gaps = 177/945 (18%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQD---------NLKMTNQGKTPFPTVPSIVLLVST 105
            A E  +    +     I C +  D+++         N  +    +        +++LV +
Sbjct: 536  AYEAHRACEDSAALGRIFCVMLKDLEEKQVTAVSGINTGLGGNREVLKKKYYHLIILVRS 595

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
              G + L ++VS  ++ +   +  R+  S L +   +GLI+ +   +G + RA     S 
Sbjct: 596  QMGLKNLYKIVSEAHV-NYFFKKPRVPRSLLNKY-RDGLILTSACEAGELYRAIVEGHSY 653

Query: 166  VAEKRLLTFKKLFG-----DRLYVNLQRHRGYDRYR---ESQVVQLAYTHELPLVATNNS 217
               K++ ++  +       +  Y+  +     +         V++L      P++AT + 
Sbjct: 654  EELKKIASYYDVLEVQPLGNNAYMVREGKVESEEVIKDFNRTVIKLGEDLHKPVIATGDV 713

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTV 275
             F   ED     VL A                P  + +   +M++ FS LP+  A E  V
Sbjct: 714  HFTEPEDAIYRSVLQAGNGFKDADN------QPPLFYRTTEDMLNQFSYLPKEKAYEIVV 767

Query: 276  EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
               R+ +  +  +   +PR          +  E +LR+      +              +
Sbjct: 768  TNPRKIAASIDGNVRAIPRGTYPPG---IEGAEQQLRDATWEHAKRDYGD------PLPE 818

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
               +RL  EL+ I    ++  ++I    + ++      VG  RGS   S  A+   I+++
Sbjct: 819  IVEKRLQKELDSICGHGYAVLYVIAVKLVAYSNAGGYQVG-SRGSVGSSAVAHFSGISEV 877

Query: 396  DPLR-----------------------------------------FSLLFERFLNPDRMS 414
            + L                                            + FE FL      
Sbjct: 878  NSLPPHYRCPKCKYSEFITDGSVDDGFDLPDKNCPHCGTRMLVDGHDIPFETFLGFYGDK 937

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D++F  + +  V RY +  +G   V +  T   +Q K A   V + L      V+ 
Sbjct: 938  EPDIDLNFSGEYQSNVHRYTEELFGKANVFKAGTVSGIQDKTAYGYVKKYLDERGRTVNH 997

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
                              A+++R                 +    G+ R    H  G+V+
Sbjct: 998  ------------------AEENRL----------------TLGCTGVKRTTGQHPGGMVV 1023

Query: 535  GDR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
                  +    P+          L  T F  K++    L+K D LG    T  +   ++ 
Sbjct: 1024 VPDTYEIYDFCPIQHPADDVAGGLLTTHFEFKYLHDT-LLKLDELGHDMPTFYKYFEEYT 1082

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                  + +  IP +D + Y LLT+   LG+   +         G+       +  ++  
Sbjct: 1083 G-----IPVDSIPMNDPKVYSLLTSPEELGVTPEQIDSQTGTF-GIPEMGTNFVRGMLVE 1136

Query: 650  YRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGY 705
             RP     ++  +   +G +    +   LI         VI  ++ +M       L    
Sbjct: 1137 ARPKNFSELIQISGLSHGTDVWTGNADELIRSGTCTIAEVIGCRDSIMLYLLRKGLEPKM 1196

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +    + +R+    K           F  G  +      +     E   K   Y F K+H
Sbjct: 1197 AFDIMEAVRKGKVAK---------GGFAPGWEEAMREHDVPDWYIESCRKI-KYMFPKAH 1246

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------------- 800
            A AY + + +  W K ++P  F A   T+  D+++                         
Sbjct: 1247 AVAYLMSAIRLMWFKLYHPQAFYAVYFTVRGDDIDYEAAVGGAAVARAHMNEVKRRLKEE 1306

Query: 801  KIKK---------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTA 850
            K  K            +      + +P  +       + V D ++     ++KG+G   A
Sbjct: 1307 KNAKDEDVLVSLQLVNEMLVRGYEFLPIELGKSRGSKYVVEDGKVRLPFCSLKGLGGAAA 1366

Query: 851  RHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              +  A+     + S+E+      +  +   +++ L   GAL   
Sbjct: 1367 DALENATLHGQEYLSIEELQQ---ASGVGSSIIDRLRQVGALGDL 1408



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 20/53 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           V L +H+  S ++       I+        PAIAITD        E    A A
Sbjct: 307 VELHLHTKLSSMDAFCDPGGIVKLAHRMGHPAIAITDHGVCQGYPEAMLAADA 359


>gi|19548822|gb|AAL90808.1| polymerase III subunit alpha [Escherichia coli]
          Length = 318

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 149/319 (46%), Positives = 217/319 (68%), Gaps = 13/319 (4%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
           +TLT++  +L+ + +R        +D++ IP DD +++ +L    T  +FQLES GM+  
Sbjct: 180 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 239

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKE 684
           ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E+I        H  + P+L+ 
Sbjct: 240 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 299

Query: 685 TQGVIIYQEQVMQIAQLLS 703
           T G+I+YQEQVMQIAQ+LS
Sbjct: 300 TYGIILYQEQVMQIAQVLS 318


>gi|291544892|emb|CBL18001.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp.
            18P13]
          Length = 1444

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/902 (17%), Positives = 296/902 (32%), Gaps = 193/902 (21%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
              ++L     G + L  L+S  ++ D   +   +  S L +   EGL+  +   +G + R
Sbjct: 619  HQIILAKNQTGLKNLYRLISYGHI-DCFYKKPLMPKSQLLKYH-EGLLFGSACEAGELFR 676

Query: 158  AFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHEL 209
            A            L  F      + L  +   +        D  +     + ++     L
Sbjct: 677  AMVDGRPYAELLELAKFYDYLEIQPLGNNAFMLRNGTAESEDDLKNWNRMICKIGDDLGL 736

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P+VAT +  F+  +D +   +LMA  +    + +  P       L+   EM+  FS L +
Sbjct: 737  PVVATCDVHFMDPKDGKYRQILMA-GNGFKDADQQAPLY-----LRTTDEMLEEFSYLGQ 790

Query: 270  ------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
                   +ENT  IA    F+  +        IE   +D+ +   N  R + + G     
Sbjct: 791  EKAYEVVVENTNRIADLIDFVRPIPKGTFTPNIEGAEEDLTRITNN--RAREIYG----- 843

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                       +   +RLD EL+ I +  FS  ++I    +  ++++   VG  RGS   
Sbjct: 844  -------DPLPEIVAKRLDRELSSIIKHGFSVLYIIAQKLVSNSEEHGYLVG-SRGSVGS 895

Query: 384  SVTAYALTITDIDPL-----------------------------------------RFSL 402
            S  A    I++++PL                                            +
Sbjct: 896  SFVASMAGISEVNPLAPHYVCPKCKHSEFITDGSYGSGFDLPAKNCPNCGIEMRRDGHDI 955

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL  D    PD D++F  + +    RY +  +G   V +  T  ++  K A     
Sbjct: 956  PFETFLGFDGDKAPDIDLNFSGEYQSSAHRYTEELFGRANVFKAGTISTVAEKTAFGYA- 1014

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                                               F E R    +      +++   G+ 
Sbjct: 1015 ---------------------------------KHFLEDRNESQNPAEENRLAKGCTGVK 1041

Query: 523  RHASTHAAGIVI--GDRPLSQLVPMYRD---VRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H  G+V+   D  +    P+        SD+  T F+   +    ++K D LG  
Sbjct: 1042 RTTGQHPGGMVVVPSDYDVYDFTPVQHPADSADSDVITTHFDFHSLHDT-ILKLDELGHV 1100

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGIFQL 623
              TL +   D    +     ++ +P  D +   +                  G+LGI ++
Sbjct: 1101 VPTLYKHLEDLTGIK-----IADVPTTDPDVIRMCTDVSVLGVTKEDVYCPTGSLGIPEM 1155

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             ++     L   +P    D + +  L     +          N K+ I +    I  ++ 
Sbjct: 1156 GTNFTIGMLMDAKPTKFSDFLQISGLSHGTDVWLG-------NAKDLIENKTCTISEVIG 1208

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
                ++ Y    +    +    +    +  R+    K            I     + + +
Sbjct: 1209 TRDSIMTY----LLYKGVEPKQAFQIMEDTRKGKAPK------TFTPERIQMLKDHNVPQ 1258

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK-- 801
                +  ++      Y F K+HAAAY + + +  W K H P+EF +   T+   + +   
Sbjct: 1259 WYIDSCLKI-----KYMFPKAHAAAYVIAAIKLGWFKLHKPLEFYSTYFTVRGGDFDADL 1313

Query: 802  -------------------------------IKKFCQDARQFNIQIMPPS-VNTPCVDFK 829
                                           I     +      + +P     +  V + 
Sbjct: 1314 AVRGIAAVRNRIEELRALGNDRSKKENDLYDILLIVNEMMSRGYEFLPIDLYKSHAVKYL 1373

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            + D +I     A+ GVG   A  + E +  + F S+E+F ++  + K     LES+   G
Sbjct: 1374 IEDGKIRIPFGALSGVGEAAAMSLYETAQARDFVSIEEFQNKCGASKTIVDTLESIGALG 1433

Query: 890  AL 891
            AL
Sbjct: 1434 AL 1435



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 2/108 (1%)

Query: 4   YLEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            ++ +P   V L +H++ S ++   S ++++ +  A    AIAITD     +  E     
Sbjct: 331 RMDNAPKKRVELHMHTTMSAMDAVSSASDLIARAQAWGHHAIAITDHGVAQAFPEAMNAI 390

Query: 63  -CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
             A   + I GC+  +      +    G+T      +I++      G 
Sbjct: 391 GKAKDFKVIYGCEAYVVNDIAERKILIGETDKTVNDTIIIFDVETTGL 438


>gi|240146858|ref|ZP_04745459.1| DNA polymerase III, alpha subunit [Roseburia intestinalis L1-82]
 gi|257200984|gb|EEU99268.1| DNA polymerase III, alpha subunit [Roseburia intestinalis L1-82]
          Length = 807

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/887 (17%), Positives = 300/887 (33%), Gaps = 190/887 (21%)

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +  RI  S   +   EGL++ +   +G + RA      +    RL+ F        Y+
Sbjct: 1   YNKRPRIPKSEFVKY-REGLLLGSACEAGELYRAIVGGRPEEEIIRLVKFYD------YL 53

Query: 185 NLQRHRGYD----------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
            +Q     +                +    ++V+L  T    +VAT +  FL  ED    
Sbjct: 54  EIQPLGNNEFMLKSDKESVSTIEELQDINRRIVKLGETFGKLVVATCDVHFLDPEDEIYR 113

Query: 229 DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR--RCSFILQ 286
            ++MA                   YL+   EM+  F  L  A    V I    + + + +
Sbjct: 114 RIIMAGKGFKDADD------QAPLYLRTTEEMLKEFEYLGSAKAEEVVITNPNKIADMCE 167

Query: 287 VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
             AP+ P     +C  + +  +  LR+           +   A        ++RLD ELN
Sbjct: 168 KIAPVRP----DKCPPVIENSDQMLRDICYTKAHSMYGEELPA------IVKERLDRELN 217

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
            I    ++  ++I    +  + ++   VG  RGS   S  A    IT+++PL+       
Sbjct: 218 SIISNGYAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFAATMSGITEVNPLQAHYRCPN 276

Query: 400 --------------------------------------FSLLFERFLNPDRMSMPDFDID 421
                                                 F + FE FL       PD D++
Sbjct: 277 CKYSDFDSPEVKAFSGRSGCDMPDKICPVCGEKLVKDGFDIPFETFLGFKGNKEPDIDLN 336

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           F  + + +   Y +  +G+ +  +  T G+L  K A   +                    
Sbjct: 337 FSGEYQSKAHAYCEVIFGYGQTFRAGTIGTLADKTAFGYIKNYY---------------- 380

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPL 539
                            R     +  +DR++   Q   G+ R    H  GIV+      +
Sbjct: 381 ---------------EERGIHKRNCEIDRIV---QGCVGVRRTTGQHPGGIVVLPVGEEI 422

Query: 540 SQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
           +   P+             T F+   I+   L+K D LG    T+++   D        +
Sbjct: 423 NTFTPVQHPANDMTTATVTTHFDYHSIDH-NLLKLDILGHDDPTMIRMLQDLTG-----I 476

Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
           D   IP DD     L      LG+   +  G+     G+     E  + +V   +P    
Sbjct: 477 DPVTIPLDDEAVMSLFKNTSALGVTPEDIGGIPLGCLGIPEFGTEFAMQMVIDAKPQEFS 536

Query: 657 NIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS-----GYSLSEA 710
           +++  +   +G +  + +   LI+  L      I  ++ +M     +       +++ E+
Sbjct: 537 DLIRISGLSHGTDVWLGNAQTLIEQGLATISTAICTRDDIMIYLIQMGLDSEQSFTIMES 596

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
               + + ++ KEEM             + + +    +  ++      Y F K+HAAAY 
Sbjct: 597 VRKGKGLKEEWKEEM-----------RAHDVPEWYIDSCLKI-----KYMFPKAHAAAYV 640

Query: 771 VISYQTAWMKT------------------HYPVEFLAA---------------SMTLEMD 797
           +++++ A+ K                   +Y +                    S++ +  
Sbjct: 641 MMAWRIAYCKVYYPLAYYAAYFSIRATGFNYEIMCQGRERLTYFQKDYERRKDSLSKKEQ 700

Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
           +V +  K  Q+         P  +     D F++ D ++  +L  I G+G   A  + EA
Sbjct: 701 DVYRDMKIVQEMYARGFDFTPIDIYRAKPDRFQIIDGKLMPALNTIDGMGDNAAIAVAEA 760

Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
           + D  F S +DF  R  + K    ++  L   G  D    +++ L  
Sbjct: 761 AKDGKFLSRDDFRQRTKATKTVIDLMGDLGLLG--DMPESNQLSLFD 805


>gi|319937397|ref|ZP_08011804.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1]
 gi|319807763|gb|EFW04356.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1]
          Length = 1438

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/921 (17%), Positives = 281/921 (30%), Gaps = 198/921 (21%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L     G + + +LVS        +++ RI    L E   EGL+  +G  +  
Sbjct: 586  RPKHMCVLAKDKTGLKNMFKLVSEANTT-YYQKTSRIPRERL-EFYREGLLFGSGCYNSE 643

Query: 155  IDRAFFFNSSQVAEKRLLTFK-----KLFGDRLYVNL--QRHRGYDRYRESQVVQLAYTH 207
            I       S +  +K +  +       L     +V       +   +    ++V  A   
Sbjct: 644  IFDLAMTRSIEELKKAMAFYDYIEILPLDICDYFVERGRVDTKEDLQRILRRIVDTAKEM 703

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMA----VAHSTVVSQKDRPR---VTPDHYLKNRSEM 260
               +VAT +  +L ++D    DV           T+    DR      TPD YL+   EM
Sbjct: 704  GKMIVATGDVHYLDQKDKIFRDVFTCNPKIGLGGTLHPLTDRNNPSAWTPDEYLRTTQEM 763

Query: 261  VSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
            +     L +       +ENT +IA        V   +  +      D+     +  LR  
Sbjct: 764  MDSLPYLTDDEKYEYVVENTNKIADMIDGSFHV---VHDKLFTPHIDNA----DENLRKL 816

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
                   +  +             +RL  EL+ I +  F   + I    ++ + +    V
Sbjct: 817  CFDNAHKQYGE------VLPDIVEKRLTKELDNIIKHGFGVIYYIAHKLVKKSNEAGYLV 870

Query: 375  GPGRGSGAGSVTAYALTITDIDPLR----------------------------------- 399
            G  RGS   S  A    I++++PL                                    
Sbjct: 871  G-SRGSVGSSFVATMAEISEVNPLPPHYYCPNCQYNEFLPDGFIANGFDLPNKVCPKCGK 929

Query: 400  ------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
                   ++ FE FL  +   +PD D++F  D +     Y +  +G   V +  T  ++ 
Sbjct: 930  PLKGDGHNIPFETFLGFNADKVPDIDLNFSGDYQPTAHAYTKEIFGESHVYRAGTISTVA 989

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             K A    G A                                     R        L  
Sbjct: 990  EKTAY---GYARGYAELMG-----------------------------RENSIRTAELER 1017

Query: 514  ISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGL 568
            I++   G+ R    H  GI++      +    P          +   T F+   I    +
Sbjct: 1018 IAKGCTGVKRTTGQHPGGIIVIPENMDVYDFTPYQYPADDLSAEWKTTHFDFHAIHD-NV 1076

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TT 614
            +KFD LG    T+++   D        +D   IP +D E   L                 
Sbjct: 1077 LKFDILGHVDPTVIRMLQDLTG-----IDPKDIPTNDPEVMSLFNSTEALKIDLGYLNCK 1131

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
             G LG+ +  +  +R  LE   P    D++ L  L          VY           + 
Sbjct: 1132 TGALGLPEFGTKFVRGMLEQTHPTSFSDLVILSGLSHGT-----DVYLG---------NA 1177

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
              LI       + VI  ++ +M +  +  G    +A  +   + K     +  +K+    
Sbjct: 1178 ETLISSGTCTLKEVIGCRDDIM-VYLIEKGLPNKDAFDIMECVRKGKSPVVFPEKK---- 1232

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               +  + +      +    K   Y F K+HAAAY + + + AW K +YP E+ A   T 
Sbjct: 1233 --YEELMRENDVPTWYIESCKKIKYMFPKAHAAAYVLSAVRVAWWKLYYPREYYAVYFTT 1290

Query: 795  EMDNVE-------------KIKKFCQ-----------------------DARQFNIQIMP 818
              D  +             K ++                          +  + +I    
Sbjct: 1291 RCDAYDIETLLQGKDVIYAKYQQILNDKQNGVKISNKEEALISVFEIALEMYERDIHFNN 1350

Query: 819  PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
             S+        +     ++ +     +I G+G      ++EA     F S ED   R   
Sbjct: 1351 ISLEKSDSRNFILDPDDEHGLLPPFTSIDGLGAAVGDSVVEARKVNSFLSKEDVTKRTKL 1410

Query: 875  KKLNRRVLESLVFAGALDCFG 895
                   L      G  +   
Sbjct: 1411 TNTQIDFL---TKIGVFEDMS 1428



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 33/66 (50%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS  S ++G  S+ + +++ A     AIAITD  N+ S  E    +    I+ I 
Sbjct: 311 VELHTHSKMSAMDGIGSITDYINRAAYWGHQAIAITDHGNVQSFPEAQMASIKNKIKMIY 370

Query: 72  GCQLDI 77
           G ++ +
Sbjct: 371 GVEMYM 376


>gi|168187670|ref|ZP_02622305.1| DNA Polymerase III alpha chain [Clostridium botulinum C str.
           Eklund]
 gi|169294481|gb|EDS76614.1| DNA Polymerase III alpha chain [Clostridium botulinum C str.
           Eklund]
          Length = 1032

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 168/936 (17%), Positives = 375/936 (40%), Gaps = 92/936 (9%)

Query: 15  QVHSSYSLL---EGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQP 69
             H+ YS L   +      + +++           T+    +    LE         ++ 
Sbjct: 7   HKHTHYSNLRTIDVITKPIDYIERAKELGHNTYFTTEHG--WGGNVLEAYTLCKENDLKM 64

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I G +    + + L+              I+L+    EG++ +  ++S   L        
Sbjct: 65  IFGVEAYY-VDNRLEKDRSNN-------HIILIALNREGFKDINRIISEANLSG-YYYKP 115

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           RI    +  +  + +I+ T   +G       F +    E+ ++     F +  Y+ +Q H
Sbjct: 116 RIDKELILSLNPKNVIITTACIAG-----RLFKTKDYEEEFVIPLLNHFKNHFYLEVQSH 170

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
           +    Y   Q+++L   ++L L+  N+S ++  +D +  D+ +         +       
Sbjct: 171 QQQSEY-NKQILELKLKYDLSLIHANDSHYIHSKDSKYRDMFLKAKGIFYEDEGSFILDY 229

Query: 250 PDHYLKNRSEMVSIFS--------DLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
           PD+      E+V  +          + E+L NT+ I  +C   L+    I       +  
Sbjct: 230 PDY-----DEIVERYEKQGVLNKEQIQESLNNTL-IFDKCE-DLEFDKEI-------KIP 275

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            + K++++    K +   E +  +  I +     +Y++ +  E++++ +     YF++  
Sbjct: 276 KVHKDKDSNKLLKTIISNEWKKERSNICRDKWN-EYKKAIKEEVDIVEKTNMEDYFILDY 334

Query: 362 DFIQWA--KKNNIPVGPGRGSGAGSVTAYALTITDIDPL--RFSLLFERFLNPDR----M 413
           + ++ A  +   +    GRGS         L  T+ID +    +L   RF++  R     
Sbjct: 335 EIVKKAVNEYKAVLTRTGRGSAPSFYINKLLGFTNIDRVSAPITLYPTRFMSTTRILQTR 394

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
           S+PD D+++     D VI+  ++  G + V  +I +  LQ  +A R   ++     ++ +
Sbjct: 395 SLPDIDLNWS--NIDPVIKASKDILGEDGVYFMIAYKPLQNSSAFRLWCKSKGFNINEYN 452

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            + K + +                     L D     ++E S+   G+    +      +
Sbjct: 453 EIAKNLDD--------------------YLEDEKWGEIIEESKIFRGVIESVAPSPCSFL 492

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
           + D+P+S+ + + +    +      +    ++   +K D+L +   +++ K  + + +  
Sbjct: 493 LLDKPISEEIGLIK--VGNQICCCLDGYNCDQYKYLKNDYLTVSVWSIISKVYEMINEPI 550

Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +       DD + ++L     T  + Q +S+     ++   P  I +I A V+  RPG
Sbjct: 551 DTIQQLENKVDD-KVWNLYKLGLTATLNQADSNYATPLIKKYSPKSIAEISAWVASIRPG 609

Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               +  +  RK     +  +  L+     ++   ++YQE +M+    L    ++E +  
Sbjct: 610 FASLMSNFLERKPYTTGVKELDNLLQ----DSYHYMMYQESIMKYLVWLG---IAEDETY 662

Query: 714 ----RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
               + A  K  ++E++  KE+ + G  KN  ++    N ++++   + Y FN SH+ + 
Sbjct: 663 GIIKKIAKKKFKEKELEVLKEKLLKGWIKNVGTEEGFENTWQVVNDASKYSFNASHSLSV 722

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            + S   A++K ++P+E+    + +   + E+  K   +   FNI+I+PP       ++ 
Sbjct: 723 GIDSLYGAYLKANHPLEYYTVVLNMYEGDTEETSKIVDELSYFNIKILPPKFRHSKSEYM 782

Query: 830 V--GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                N IY  L++IK +    A  + E   +K  D +E          +N R L+ L+ 
Sbjct: 783 CDKEQNSIYKGLSSIKYISKQVADELFELRNEKYNDFIEVLYDLNTKTSINSRQLDILIK 842

Query: 888 AGALDCFGYSRMQL-LQSLDNIQKYAQWVEKNRTNK 922
                 FG S+  L +  L +     + ++K + N+
Sbjct: 843 LNYFSEFGKSKRLLKITGLADSLLNKKQIKKEKLNE 878


>gi|217077906|ref|YP_002335624.1| DNA polymerase III subunit alpha [Thermosipho africanus TCF52B]
 gi|217037761|gb|ACJ76283.1| DNA polymerase III subunit alpha [Thermosipho africanus TCF52B]
          Length = 827

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 182/670 (27%), Positives = 322/670 (48%), Gaps = 92/670 (13%)

Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
           K      Y++R++ E+++I    F  YF  V   ++ AKKNNI +GPGRGS  GS+ +Y 
Sbjct: 162 KNVKNPIYKKRIEKEVSIIKEKNFVDYFFTVYKIVKIAKKNNIKIGPGRGSAVGSLVSYF 221

Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
           L IT +DP+++ LLFERFLN  R   PD D+D    +R  +I  ++ ++    V  I TF
Sbjct: 222 LGITSVDPIKYDLLFERFLNKGRNEPPDIDLDVEDTKRKLLIEKIREEFK--YVYYITTF 279

Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            S+  K                                +L+ IA +++            
Sbjct: 280 SSIGEK--------------------------------TLKKIAYENKISS--------- 298

Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
              +  + L  L  H S HAAGI+I    ++  VP+           +++M+ + K G I
Sbjct: 299 ---DKIKYLLNLPIHKSVHAAGIIISKEKIN--VPIKD------QTIEWDMESLHKIGYI 347

Query: 570 KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
           KFD LGLKTLT+L +               +   +D +T+HL++   T GIFQL+S+  +
Sbjct: 348 KFDLLGLKTLTILSELEK---------KFGVPRLNDQKTFHLISKGFTNGIFQLDSNLGK 398

Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
           + +  ++P  I+++   +SL RPGP+       ++K    KI +    +D +LK+T GV+
Sbjct: 399 KVIRTIKPRNIKELSIALSLNRPGPLKAG---IDKKYANSKIENSSQKLD-VLKDTNGVL 454

Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
           I+QEQ+M+IA   + ++  EADV R+A+ KK K+ M    ++         ++  I   +
Sbjct: 455 IFQEQIMKIATEYANFTEEEADVFRKAVSKKDKQIMKPLLKKLKD-GLLKKLNPNIVNEL 513

Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            E + +F++Y FNKSHA AYA I+Y  ++ KTH+P +F    +  +    EKI     + 
Sbjct: 514 IETIIEFSEYAFNKSHAIAYAHITYYLSYFKTHFPKQFYKTILKYDSSKSEKI---ILEL 570

Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                +++PP++    ++  + +N     +  I G+     + I+    +KP+DSL++F 
Sbjct: 571 HARGFKVIPPNLTQNELEN-LENNIFEIPITLISGINEKIGKQII---KNKPYDSLQNFL 626

Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            +  +  +N  ++ESL+  G+ D    SR  LL  L  ++          ++   ++F  
Sbjct: 627 HKNPN--INYSIIESLIKIGSFDYLSDSRRALLVKLKELRTGINTKMLEISS---SLFGK 681

Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
           +          +++ +E S  R + E   +GF  S  P++ ++  L  +       S + 
Sbjct: 682 KFS--------KEYKIEKSWERCDMEYTTVGFCISK-PVEKFENKLAPL---SLALSRSQ 729

Query: 990 IRGNNIRLAA 999
              +++ +  
Sbjct: 730 KIASHVSVIG 739



 Score = 44.2 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 18 SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDI 77
          S YS     L + + +   + +    + + DT N  + ++F     + GI+PII  + + 
Sbjct: 7  SPYSFSGSILKIEDAVKYASINGARCLILCDT-NFHATVKFIDICKSYGIKPIISFKHNN 65


>gi|218283081|ref|ZP_03489176.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989]
 gi|218216150|gb|EEC89688.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989]
          Length = 1446

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 154/943 (16%), Positives = 311/943 (32%), Gaps = 223/943 (23%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYL-----LDQGKQSVRICLSWLQEIGTEG-LIMLT 148
                + +     +G + L EL++  +      + +     RI    + +    G L++ +
Sbjct: 592  RPYHMTVFAKNKDGLKELFELITLSHTQYLVSMGKENGQPRIIKEEISKKWDNGNLLIGS 651

Query: 149  GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ----RHRGYDR---------- 194
               +G I       S +   + +  +        Y+ LQ         DR          
Sbjct: 652  SCQNGEIFELAHTRSKKELFEAMAYYD-------YIELQPLDCYKNMLDRGSITDVEDLK 704

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM---AVAHST-----VVSQKDRP 246
            +    +   A      ++A++++ +++  +    DV +   A+ ++         Q  + 
Sbjct: 705  WYLQFIYDTAKEAGKMVIASSDAHYVNPNEKRLRDVYINAKAIGNARHPLYIYNKQARKA 764

Query: 247  RVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               P+ +L    EM+  F  + E  A E  VE   +   + +   PI  +    + +   
Sbjct: 765  TSNPNQHLLTTDEMLKAFEWMGEDVAYEVVVENTNKLKLLTEPIFPIKDKLYPPDIEG-- 822

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               + +LR+           +             +RL  EL+ I    +   + I    +
Sbjct: 823  --SDQKLRDICFETAHQWYGKDL------PDIVEKRLTRELDSIIGHGYYVVYYISHLLV 874

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------ 400
            + +  +   VG  RGS   S  A    IT+++PL                          
Sbjct: 875  KKSNDDGYLVG-SRGSVGSSFVATMSNITEVNPLTPHYVCKNCQHYEFLDGDEAKSGFDL 933

Query: 401  -----------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                              + FE FL  +   +PD D++F  + +     Y +  +G + V
Sbjct: 934  PDKVCPVCGEIMRGDGQDIPFETFLGFEGDKVPDIDLNFSGEYQPNAHAYTKEVFGDDHV 993

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
             +  T G++Q K A   V                            +   ++        
Sbjct: 994  FRAGTVGTVQEKTAYGYV----------------------------KGYEEEMECEPFNE 1025

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIG--DRPLSQLVPMY---RDVRSDLPVTQF 558
            A     + +++++  EG+ R    H  GIV+   D  +    P+     +  +    T F
Sbjct: 1026 A-----KRVDLAKGCEGVKRTTGQHPGGIVVVPLDMDVHDFTPVQYPANNPNATWKTTHF 1080

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
            +   I    ++KFD LG    T ++       +R   V++  IP +D  T  + +T  +L
Sbjct: 1081 DFHQIHD-NILKFDILGHVDPTAMKML-----ERITGVNVRQIPMNDQATMAIFSTTESL 1134

Query: 619  --------------GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
                          GI +  +  +R  LE  +P    +++ +  L     +         
Sbjct: 1135 KIDTTKYNEVTGAAGIPEFGTPFVRGILELTKPTTFAELVTISGLSHGTDVWLG------ 1188

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKI 721
                    +   LID    +   VI  ++ +M       +    S +  + +R+  G K 
Sbjct: 1189 --------NAKDLIDNGTCKLNEVIGCRDDIMVDLMGYGVKPKLSFTIMESVRKGKGLK- 1239

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
                    + +++    N + +    +  ++      Y F K+HA AY +++ + AW K 
Sbjct: 1240 --------DEWVTEMKANNVPEWFIDSCTKI-----KYMFPKAHAVAYVMMAVRIAWFKV 1286

Query: 782  HYPVEFLAASMTLEMDNVE---------KIKKFCQDARQF-------------------- 812
            H PV +     ++  D  +          I++   D +                      
Sbjct: 1287 HMPVHYYCMYFSIRCDAYDVQTMIQGEAAIRQRMADIKHMKEDKTQKPSDKELAIYDTLE 1346

Query: 813  --------NIQIMPPSVNTP-CVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                      +    S+N     +F V       I     +I G+G+     +++A  +K
Sbjct: 1347 LALEMVLRGFRFSNISINRSAATEFIVDPDDPKAIIPPFTSIDGLGSNVGLSVVKAREEK 1406

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL 902
            PF S ED   R    K    ++E L    AL+     ++M L 
Sbjct: 1407 PFLSKEDVLKRTQLSKT---LVEKLAEMNALEGLDEENQMTLF 1446



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 18/38 (47%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
            VHS++S ++G  ++   + +       +I + D   +
Sbjct: 307 HVHSNFSEMDGVCAIEEFIQQAYDWGMDSIGVCDHQVV 344


>gi|268610447|ref|ZP_06144174.1| DNA polymerase III, alpha subunit [Ruminococcus flavefaciens FD-1]
          Length = 1441

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 158/904 (17%), Positives = 305/904 (33%), Gaps = 169/904 (18%)

Query: 84   KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG 143
            ++ ++ +T        ++LV    G + L +LVS   L +   +   I  S L E   EG
Sbjct: 602  RLVDEIETKKLKSYHHIILVRNQAGLKNLYKLVSLSNL-EYFYKKPLIPKSIL-EQHREG 659

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDR--Y 195
            LI  +   +G + +A      +   +++  F      + +  +   V   +    +    
Sbjct: 660  LIFGSACEAGELFQAILDIRDEEYIEQIAKFYDYLEIQPIGNNEFMVRDGKAENDEELMQ 719

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
               ++V+L     +P+ AT +  F+  +D     +++A      +  KD     P  YL+
Sbjct: 720  YNREIVELGDKLGIPVCATCDVHFIDPKDGIYRKIILA-----SMGFKDAENQAP-LYLR 773

Query: 256  NRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
               EM+  F+ L E  A E  +      +  ++V  PI         D      E EL  
Sbjct: 774  TTEEMMKEFAYLGEEKAKEIVITNTNNIADQIEVVRPIPKGTFTPTIDGA----EEELVK 829

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
                         +I      +   +RLD EL+ I +  FS  ++I    +  +  N   
Sbjct: 830  ITHEKA------FSIYGDPLPEIVDKRLDRELSSIIKHGFSVLYIIAQKLVWNSVDNGYL 883

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLR---------------------------------- 399
            VG  RGS   S  A    I++++PL                                   
Sbjct: 884  VG-SRGSVGSSFVASMAGISEVNPLPPHYVCPKCKHSEFLLDGKYGSGFDLPPKNCPDCG 942

Query: 400  -------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
                     + FE FL  D    PD D++F  + +    RY +  +G   V +  T   +
Sbjct: 943  TDMTRDGHDIPFETFLGFDGDKAPDIDLNFSDEYQFWAHRYTEKLFGKSNVFKAGTISVV 1002

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
              K A   V +  +     ++                                     L 
Sbjct: 1003 AEKTAYGYVKKYCEENGITLNN----------------------------------AELT 1028

Query: 513  EISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRD---VRSDLPVTQFNMKWIEKAG 567
             ++    G+ R    H  G+V+   D  +    P+        S++  T F    +    
Sbjct: 1029 RLAIGCTGIKRTTGQHPGGMVVVPSDYDVYDFTPVQHPADTADSEIITTHFTFNSLHDT- 1087

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            ++K D LG    TL +   D    +     +  +P  D +   + T    LG+   E   
Sbjct: 1088 ILKLDELGHVVPTLYKHLEDLTGIK-----IKDVPTSDPDVIRMCTNCDVLGVTPEEI-Y 1141

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQ 686
             +    G+        I ++   +P    + +  +   +G +  + +   LID  +    
Sbjct: 1142 CKTGSLGIPEMGTGFTIQMLLDAKPTKFSDFLQISGLSHGTDVWLGNAKDLIDQGVCTIS 1201

Query: 687  GVIIYQEQVMQ---IAQLLSGYSLSEADVLRRAMGKKI--KEEMDKQKERFISGASKNGI 741
             VI  ++ +M       +    +    +  R+    K    E +   ++  +        
Sbjct: 1202 EVIGTRDSIMTYLLYKGVEPKMAFQIMEWTRKGKAPKQFTPEIIQMLRDHNV-------- 1253

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +    +  ++      Y F K+HAAAY + + +  W K H P+E+ A   ++  ++ + 
Sbjct: 1254 PEWYIESCLKI-----KYMFPKAHAAAYVIAAIKLGWFKLHRPLEYYATYFSVRGEDFDA 1308

Query: 801  ------------KIKKF--------------------CQDARQFNIQIMPPSV-NTPCVD 827
                        KI++                       +      + +P  +  +   D
Sbjct: 1309 ELAVKGIKAVRAKIEELKALGNDRSNKESALYDILLITNEMMSRGYEFLPIDLFKSHAKD 1368

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            + V D ++    +A+ GVG   A  I +A     F S+E+F     + K    +L+++  
Sbjct: 1369 YLVEDGKLRIPFSAMSGVGDNAAMGIYDAVQKGGFMSIEEFQQESGASKTTIDMLKTIGA 1428

Query: 888  AGAL 891
             G L
Sbjct: 1429 FGDL 1432



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE-FSQKACAAGIQPI 70
           V L  H++ S ++       ++++ A+    A+AITD  N+ +  +          +   
Sbjct: 339 VELHCHTNMSAMDAVTDPVTLINRAASWGHQAMAITDHGNVQAFPDCMYNMPKDFKVIYG 398

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPT 95
           +   +  D++ ++ M  +    F  
Sbjct: 399 MEAYVVNDVERDMVMYGEDGRSFDD 423


>gi|160944143|ref|ZP_02091373.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii
            M21/2]
 gi|158444819|gb|EDP21823.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii
            M21/2]
          Length = 1417

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/945 (16%), Positives = 312/945 (33%), Gaps = 177/945 (18%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQD---------NLKMTNQGKTPFPTVPSIVLLVST 105
            A E  +    +     I C +  D+ +         N  +    +        +++LV  
Sbjct: 536  AYEAHRACEDSAALGRIFCVMLNDLAEKEVTKVSEINTGLGGNREVLKKKYYHLIILVKN 595

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
              G + L ++VS  ++ +   +  R+  S L +   +GL++ +   +G + RA    +S 
Sbjct: 596  QMGLKNLYKIVSEAHV-NYFFKKPRVPRSLLNKY-RDGLLLTSACEAGELYRAIVDGTSY 653

Query: 166  VAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNS 217
               K++  +      + L  +   V   +    +R +E    V++L      P++AT + 
Sbjct: 654  EELKKIAAYYDILEIQPLGNNAYMVRDGKVDSEERIKEFNRTVIKLGEDLHKPVIATGDV 713

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTV 275
             F   ED     VL A                P  + +   +M++ F  LP+  A E  V
Sbjct: 714  HFTEPEDAIYRAVLQAGNGFKDADN------QPPLFFRTTQDMLAQFYYLPKEKAYEVVV 767

Query: 276  EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
            +  R+ + ++  +   +PR          +  E +LR+      +              +
Sbjct: 768  KNPRKIAAMIDNNVRAIPR---GTYPPSIEGAEQQLRDATWEHAKRDYGD------PLPE 818

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
               +RL  EL+ I    ++  ++I    + ++      VG  RGS   S  A+   I+++
Sbjct: 819  IVEKRLQKELDSICGHGYAVLYVIAVKLVAYSNAGGYQVG-SRGSVGSSAVAHFSGISEV 877

Query: 396  DPLR-----------------------------------------FSLLFERFLNPDRMS 414
            + L                                            + FE FL      
Sbjct: 878  NSLPPHYRCPKCKHSEFITDGSVDDGFDLPDKNCPHCGTRMLVDGHDIPFETFLGFYGDK 937

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D++F  + +  V RY +  +G   V +  T   +Q K A   V + L      V+ 
Sbjct: 938  EPDIDLNFSGEYQSNVHRYTEELFGKANVFKAGTVSGIQDKTAYGYVKKYLDERQRTVNH 997

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
                              A+++R                 +    G+ R    H  G+V+
Sbjct: 998  ------------------AEENRL----------------TLGCTGVKRTTGQHPGGMVV 1023

Query: 535  GDR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
                  +    P+          L  T F  K++    L+K D LG    T  +   ++ 
Sbjct: 1024 VPDTYEIYDFCPIQHPADDVAGGLLTTHFEFKYLHDT-LLKLDELGHDMPTFYKYFEEYT 1082

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                  + +  IP +D + Y LLT+   LG+   +         G+       +  ++  
Sbjct: 1083 G-----IPVDSIPMNDPKVYSLLTSPEALGVTPEQIDSQTGTF-GIPEMGTNFVRGMLVE 1136

Query: 650  YRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGY 705
             RP     ++  +   +G +    +   LI         VI  ++ +M       L    
Sbjct: 1137 ARPKNFSELIQISGLSHGTDVWTGNADELIRSGTCTIAEVIGCRDSIMLYLLRKGLEPKM 1196

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +    + +R+    K           F  G  +      +     E   K   Y F K+H
Sbjct: 1197 AFDIMEAVRKGKVAK---------GGFQPGWEEAMREHEVPDWYIESCRKI-KYMFPKAH 1246

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------KIK-------------- 803
            A AY + + +  W K + P  F A   T+  D+++         +               
Sbjct: 1247 AVAYLMSAIRLMWYKIYKPQAFYAVYFTVRGDDIDYEAAIGGAAVARAHMEAVKRRLKEE 1306

Query: 804  ------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTA 850
                        +   +      + +P  +       + V D+++    +A+KG+G   A
Sbjct: 1307 KNAKDEDVLVSLQLVNEMLSRGYEFLPIELGKSLGSKYVVEDDKVRLPFSALKGLGGAAA 1366

Query: 851  RHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              +   +     + S+E+      +  +   +L+ L   GAL   
Sbjct: 1367 DALERVTIHGEEYISVEELQQ---ASGVGSSILDRLRQVGALGDL 1408



 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-----CAAG 66
           V L +H+  S ++G      I+        PAIAITD        E    A         
Sbjct: 307 VELHLHTKLSSMDGFCDPGGIVKLAHRMGHPAIAITDHGVCQGYPEAMLAADDIHKKDPD 366

Query: 67  IQPIIGCQLDI 77
            + I GC+   
Sbjct: 367 FKLIYGCEAYF 377


>gi|212695655|ref|ZP_03303783.1| hypothetical protein ANHYDRO_00172 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677328|gb|EEB36935.1| hypothetical protein ANHYDRO_00172 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 405

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/416 (30%), Positives = 216/416 (51%), Gaps = 19/416 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +F HL +H+ YSLL+G   ++ +++K+   +  + AITD  N++  +EF +K    GI+P
Sbjct: 4   NFTHLHLHTEYSLLDGFTKIDKLMEKLKEYKMNSCAITDHGNMYGVIEFYKKCQDNGIKP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIGC++ +   D+     Q K        ++LL    +GYQ LI++VS+ Y         
Sbjct: 64  IIGCEVYVSENDHKIKNPQNKR----YYHLILLAKNNKGYQNLIKIVSKAYTEG-FYYKP 118

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
           RI    L+E   + +I L+   +G I++    N  + A +    +  LF  +  Y+ +Q 
Sbjct: 119 RIDFEVLEEY-KDDIIALSACLNGEINQRILENDIEKAYQTAQKYLDLFGRENFYLEIQN 177

Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H   ++      ++++    ++ +V TN+  ++ + D    DVL  +   + +  + R +
Sbjct: 178 HGLKEQKIVNQNLLKIHEDLKIEMVCTNDVHYVEKNDSFYQDVLSCIQTGSFLEDEKRMK 237

Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
           +  D  YLK++  M  IF D P A EN+ +IA  C+  L+ H P LP F +   +     
Sbjct: 238 MPCDEFYLKDQQMMSEIFKDFPRAYENSQKIADMCNVKLEFHNPHLPYFTKVPEN---MT 294

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + L+     GL  +        G   +  ++R + E++VI  M +  YFLIV DF+++
Sbjct: 295 NLDYLKYLVNKGLAKKY-------GKVDEKIQKRAEKEISVINNMGYVDYFLIVWDFVRY 347

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           AK N I VGPGRGS AGS+ +YAL IT IDP++++LLFERF  P +     +   F
Sbjct: 348 AKDNKIAVGPGRGSAAGSIISYALDITQIDPIKYNLLFERFFKPRKSVHARYRYRF 403


>gi|257439598|ref|ZP_05615353.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
            A2-165]
 gi|257197965|gb|EEU96249.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
            A2-165]
          Length = 1417

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 166/944 (17%), Positives = 310/944 (32%), Gaps = 177/944 (18%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQG---------KTPFPTVPSIVLLVSTA 106
             E  +    +     I C +  D+ +    T +G         +        +++LV   
Sbjct: 537  YEAHRACEDSAALGRIFCVMLSDLAEKEVTTVEGINTGLGGNREVLKKKYFHLIILVKNQ 596

Query: 107  EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
             G + L ++VS  ++ +   +  R+  S L +   +GLI+ +   +G + RA     S  
Sbjct: 597  MGLKNLYKIVSEAHV-NYFFKKPRVPRSLLNKY-RDGLILTSACEAGELYRAVVEGRSYE 654

Query: 167  AEKRLLTF------KKLFGDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSL 218
              K++ ++      + L  +   V   +    +  +     +++L      P++AT +  
Sbjct: 655  ELKKIASYYDVLEIQPLGNNEYMVRDGKVESEEVIKDFNRTIIRLGEDLHKPVIATGDVH 714

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVE 276
            F   ED     VL A                P  + +   +M+  FS LP+  A E  V 
Sbjct: 715  FTEPEDAIYRTVLQAGNGFKDAD------TQPPLFYRTTEDMLKQFSYLPKEKAYEIVVT 768

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
              R+ +  +  +   +PR          +  E +LR+      +              + 
Sbjct: 769  NPRKIAATIDNNVRAIPR---GTYPPSIEGAEQQLRDATWEHAKRDYGD------PLPKI 819

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               RL  EL+ I    ++  ++I    + ++      VG  RGS   S  A+   I++++
Sbjct: 820  VEDRLKKELDSICGHGYAVLYVIAVKLVAYSNAGGYQVG-SRGSVGSSAVAHFSGISEVN 878

Query: 397  PLR-----------------------------------------FSLLFERFLNPDRMSM 415
             L                                            + FE FL       
Sbjct: 879  SLPPHYRCPKCKYSEFITDGSVDDGFDLPDKDCPHCGTRMLVDGHDIPFETFLGFYGDKE 938

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  + +  V RY +  +G   V +  T   +Q K A   V + L+     V+  
Sbjct: 939  PDIDLNFSGEYQSNVHRYTEELFGKANVFKAGTVSGIQDKTAYGYVKKYLEARGKTVNH- 997

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                             A+++R                 +    G+ R    H  G+V+ 
Sbjct: 998  -----------------AEENRL----------------TLGCTGVKRTTGQHPGGMVVV 1024

Query: 536  DR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+          L  T F  K++    L+K D LG    T  +   ++  
Sbjct: 1025 PDTYEIYDFCPIQHPADDVAGGLLTTHFEFKYLHDT-LLKLDELGHDMPTFYKYFEEYTG 1083

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 + +  IP +D   Y LLT+   LG+   +         G+       +  ++   
Sbjct: 1084 -----IPVDSIPMNDPRVYSLLTSPEELGVTPEQIDSQTGTF-GIPEMGTNFVRGMLVEA 1137

Query: 651  RPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYS 706
            RP     ++  +   +G +    +   LI         VI  ++ +M       L    +
Sbjct: 1138 RPRNFSELIQISGLSHGTDVWTGNADELIRSGTCTIAEVIGCRDSIMLYLLRKGLEPKMA 1197

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
                + +R+    K           F  G  +      +     E   K   Y F K+HA
Sbjct: 1198 FDIMEAVRKGKVAK---------GGFKPGWEEAMREHEVPDWYIESCRKI-KYMFPKAHA 1247

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------------KIK------- 803
             AY + + +  W K + P EF A   T+  D+++                 +K       
Sbjct: 1248 VAYLMSAIRLMWFKLYRPAEFYAVYFTVRGDDIDYEAAVGGAAVARAHMEAVKRRLKEEK 1307

Query: 804  -----------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTAR 851
                       +   +        +P  +       + V D ++     A+KGVG T A 
Sbjct: 1308 NAKDEDVLVSLQLVNEMLSRGYAFLPIELGKSRGNKYIVEDGKVRLPFCALKGVGGTAAA 1367

Query: 852  HIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             +  A+ D   + S+E+      +  +   VLESL  AG L   
Sbjct: 1368 SLERATIDGQEYISVEELQQ---ATGVTSAVLESLRSAGVLADL 1408



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 18/47 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
           V L +H+  S ++       I+        PAIAITD        E 
Sbjct: 307 VELHLHTKLSSMDAFCDPGGIVKLAHRMGHPAIAITDHGVCQGYPEA 353


>gi|160903239|ref|YP_001568820.1| DNA-directed DNA polymerase [Petrotoga mobilis SJ95]
 gi|160360883|gb|ABX32497.1| DNA-directed DNA polymerase [Petrotoga mobilis SJ95]
          Length = 989

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 171/949 (18%), Positives = 333/949 (35%), Gaps = 198/949 (20%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS  S     L +  ++D +++  Q A+AITD  N+     F + A   GI+ I 
Sbjct: 129 VELHAHSKMSSKLSILGMEELVDAVSSFGQKAVAITDNENVQIIPYFYEYAKRKGIKAIF 188

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           GC+L++  +               V  + +LV   EG + L +++S  ++ +   +S  I
Sbjct: 189 GCELNVHDERR-----------GIVKHVNVLVKNKEGLKNLYKIISISHM-NVVNKSAII 236

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRH 189
            LS L+ +  +GL++ +      +       S+   ++ +  F   +LF    Y +L   
Sbjct: 237 SLSDLKNL-RKGLLLGSSLDGFLLYSYLNKYSTNDLKEWITFFDYIELFPMNCYNDLCLE 295

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
           +G        V ++A     P+V + +  +L EED E    L A+   T    K R  V 
Sbjct: 296 KGKIIDYSRTVYEIAKDVRKPVVMSGDVHYLREEDREY---LNAMIVGTSTKSKPRKTVR 352

Query: 250 PDHYLKNRSEMV----SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             +Y ++ S+M      IF     A E  V+   + +  ++  AP   +           
Sbjct: 353 SVNYFRSTSQMYDEAFEIFKKRGIAKEIVVKNTNKIAGEIEELAPFDFKLKAPYIP---- 408

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             +  LR+   +  + R  +         +    R++ EL  I    ++  FLI AD ++
Sbjct: 409 SADQNLRDIVYSNAKKRYGEKL------HRIIIDRIEKELKSIVDNGYAVIFLISADMVE 462

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------------- 399
            + +   P+G  RGS   S+ A+ L IT+++PL                           
Sbjct: 463 KSLEMGYPIG-SRGSVGSSLVAFLLGITEVNPLPPHYFCESCGFIEFVENLNLSGFDLKE 521

Query: 400 --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                          ++ FE F+      +PD D++F  +   ++ R+++ K+G     +
Sbjct: 522 KSCPNCGAILNSDGHNIRFEVFMGYSGEKIPDIDVNFSAEIFTDIQRFLEEKFGRNYCYK 581

Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
             T  ++    A++                                          +  D
Sbjct: 582 AGTISTISRYNAMKMA------------------------------------LNYFKDED 605

Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFNM 560
            +   L  ISQK++G   +   H + ++I  +   +    P      S    +  T ++ 
Sbjct: 606 MNFAHLFWISQKIKGTKLNTGQHPSAMIIIPQEYDVHDFTPYQYSANSPEIGIVTTHYDF 665

Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK----- 615
           K +E   L+K D L     T L+   D         D + I   D     L ++      
Sbjct: 666 KALEN-DLLKIDVLSHDGPTFLKMLKDLTG-----YDYNDISMHDERILSLFSSTKELGV 719

Query: 616 ---------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
                    GTLG+ ++ +    + L   +P+   D+    SL         + +NN + 
Sbjct: 720 DLSEIGTEIGTLGVPEVWTPFSHKMLTETKPETFYDLCRTNSLAHGTD----IWFNNARE 775

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ---IAQLLSGYSLSEADVLRRAMGKKIKE 723
                     ++  +      ++  ++ ++       +    +    + +R+      KE
Sbjct: 776 ---------IVLKNVAG-IDQIVSCRDDILTTLEYFGVEPKTAFMVMEKVRKGKELTEKE 825

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
                            I  + A   +    K   Y F K+HA AY +++Y+ A+ K +Y
Sbjct: 826 L--------------KAIDDSEAPEWYLDSLKKIHYLFPKAHAVAYMIMAYKIAFYKLYY 871

Query: 784 PVEFLAASM--------------------------------TLEMDNVEKIKKFCQDARQ 811
           P+EF +                                     E  N     K   + R+
Sbjct: 872 PLEFYSVYFTIRARFFDIDIIMDEDLTVKTIKKLSKNEYQHNYEESNFYSTLKTAYEMRK 931

Query: 812 FNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                + P +       FK+    +   L  ++ +G+  A+ I++   +
Sbjct: 932 RGFGFLRPDLYKSEAKLFKIEGEYLRIPLTKVRNIGSKNAQRILKERGE 980


>gi|80159747|ref|YP_398491.1| DNA Polymerase III alpha chain [Clostridium phage c-st]
 gi|78675337|dbj|BAE47759.1| DNA Polymerase III alpha chain [Clostridium phage c-st]
          Length = 1032

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 167/936 (17%), Positives = 368/936 (39%), Gaps = 92/936 (9%)

Query: 15  QVHSSYSLL---EGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQP 69
             H+ YS L   +      + + +           T+    +    LE         ++ 
Sbjct: 7   HKHTHYSNLRTIDVITKPIDYIKRAKELGHNTYFTTEHG--WGGNVLEAYTLCKENNLKM 64

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I G +    + + L+              I+L+    +G++ +  ++S   L        
Sbjct: 65  IFGVEAYY-VDNRLEKDRSNN-------HIILIALNRDGFKDINRIISEANLSG-YYYKP 115

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           RI    +  +  + +I+ T   +G       F +    EK ++     F D  Y+ +Q H
Sbjct: 116 RIDKELILSLNPKNVIVTTACIAG-----RLFKTKDYEEKFVIPLLNHFKDHFYLEVQSH 170

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
           +    Y   Q+++L + + L L+  N+S ++   D +  D+ +         +       
Sbjct: 171 KQQSEY-NKQILELKFKYNLSLMHANDSHYIYSRDAKYRDMFLKAKGIIYEDEGGFILDY 229

Query: 250 PDHYLKNRSEMVSIFS--------DLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
           P++      E+V  +          + E+L NT+ I  +C   L+    I       +  
Sbjct: 230 PNY-----DEIVKRYEKQGVLNKEQIQESLNNTL-IFDKCE-DLKFDKEI-------KIP 275

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            + K++++    K +   E +  +  I +     +Y + +  E++++ +     YF++  
Sbjct: 276 KVHKDKDSNKLLKTIISNEWKKERNNICRDKWN-EYEKAIKEEVDIVQKTNMEDYFILDY 334

Query: 362 DFIQWAKK--NNIPVGPGRGSGAGSVTAYALTITDIDPL--RFSLLFERFLNPDR----M 413
           + ++ A      +    GRGS         L  T+ID +    +L   RF++  R     
Sbjct: 335 EIVKKAVDEYKAVLTRTGRGSAPSFYINKLLGFTNIDRVSAPITLYPTRFMSTTRILQTR 394

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
           S+PD D+++     + VI+  ++  G + V  +I +  LQ  +A R   ++     ++ +
Sbjct: 395 SLPDIDLNW--ANIEPVIKASKDILGEDGVYFMIAYKPLQNSSAFRLWCKSKGFNINEYN 452

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            + K + +                     + D    +++E S+   G+    +      +
Sbjct: 453 EIAKNLDD--------------------YIEDEKWGKIIEESKIFRGVIESVAPSPCSFL 492

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
           + D+P+S+ + + +    +      +    ++   +K D+L +   +++ K  + + +  
Sbjct: 493 LLDKPISEEIGLIK--VGNQICCCLDGYNCDQYKYLKNDYLTVSVWSIISKVYEMIREPI 550

Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +       DD   ++L     T  + Q +S+     ++   P  I +I A V+  RPG
Sbjct: 551 DTIQQLENKVDD-RVWNLYKLGLTATLNQADSNYATPLIKKYSPKSIAEISAWVASIRPG 609

Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               +  +  RK     +  +  L+     ++   ++YQE +M+    L    ++E +  
Sbjct: 610 FASLMSNFLERKPYTTGVKELDNLLQ----DSYHYMMYQESIMKYLVWLG---IAEDETY 662

Query: 714 ----RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
               + A  K  ++E++  KE+ + G  KN   K    N ++++   + Y FN SH+ + 
Sbjct: 663 GIIKKIAKKKFKEKELEALKEKLLKGWIKNVGEKEGFENTWQVVNDASKYSFNASHSLSV 722

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            + S   A++K +YP+E+    + +   + E+  K   +   FNI I+ P       ++ 
Sbjct: 723 GIDSLYGAYLKANYPLEYYTVVLNMYEGDTEETSKIVDELNYFNITILSPKFRYSKSEYM 782

Query: 830 V--GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                N IY  L++IK +    A  + E   +K  D +E          +N R L+ L+ 
Sbjct: 783 CDKEQNSIYKGLSSIKYISKQVADELFELRNEKYNDFIEVLSDLNTKTSINSRQLDILIK 842

Query: 888 AGALDCFGYSRMQL-LQSLDNIQKYAQWVEKNRTNK 922
                 FG S+  L +  L +     + ++K + N+
Sbjct: 843 LNYFSEFGKSKKLLKITELADNLLNKKQIKKEKLNE 878


>gi|313115651|ref|ZP_07801107.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
            KLE1255]
 gi|310622037|gb|EFQ05536.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
            KLE1255]
          Length = 1417

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 159/945 (16%), Positives = 313/945 (33%), Gaps = 177/945 (18%)

Query: 55   ALEFSQKAC-AAGIQPIIGCQLDI--------DMQDNLKMTNQGKTPFPTVPSIVLLVST 105
            A E  +    +A +  I G  L+           + N  +    +        +++LV  
Sbjct: 536  AYEAHRACEDSAALGRIFGVMLNDLKEKQVAKVSEINTGLGGNREVLKKKYYHLIILVKN 595

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
              G + L ++VS  ++ +   +  R+  S L +   +GL++ +   +G + RA    +S 
Sbjct: 596  QMGLKNLYKIVSEAHV-NYFFKKPRVPRSLLNKY-RDGLLLTSACEAGELYRAIVDGTSY 653

Query: 166  VAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNS 217
               K++ ++      + L  +   V   +    +  +     V++L      P++AT + 
Sbjct: 654  EELKKIASYYDILEIQPLGNNAYMVRDGKVDSEEDIKNFNRTVIKLGEDLHKPVIATGDV 713

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTV 275
             F   ED     VL A                P  + +   +M++ F  LP+  A E  V
Sbjct: 714  HFTEPEDAAYRAVLQAGNGFKDADN------QPPLFFRTTQDMLAQFYYLPKEKAYEVVV 767

Query: 276  EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
            +  R+ + ++  +   +PR          +  E +LR+      +              +
Sbjct: 768  KNPRKIAAMIDNNVRAIPR---GTYPPSIEGAEQQLRDATWEHAKRDYGD------PLPE 818

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
               +RL  EL+ I    ++  ++I    + ++      VG  RGS   S  A+   I+++
Sbjct: 819  IVEKRLQKELDSICGHGYAVLYVIAVKLVAYSNAGGYQVG-SRGSVGSSAVAHFSGISEV 877

Query: 396  DPLR-----------------------------------------FSLLFERFLNPDRMS 414
            + L                                            + FE FL      
Sbjct: 878  NSLPPHYRCPKCKHSEFITDGSVDDGFDLPDKNCPNCGTRMLVDGHDIPFETFLGFYGDK 937

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D++F  + +  V RY +  +G   V +  T   +Q K A   V + L      V+ 
Sbjct: 938  EPDIDLNFSGEYQSNVHRYTEELFGKANVFKAGTVSGIQDKTAYGYVKKYLDERGRTVNH 997

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
                              A+++R                 +    G+ R    H  G+V+
Sbjct: 998  ------------------AEENRL----------------TLGCTGVKRTTGQHPGGMVV 1023

Query: 535  GDR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
                  +    P+          L  T F  K++    L+K D LG    T  +   ++ 
Sbjct: 1024 VPDTYEIYDFCPIQHPADDVAGGLLTTHFEFKYLHDT-LLKLDELGHDMPTFYKYFEEYT 1082

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                  + +  IP +D + Y LLT+   LG+   +         G+       +  ++  
Sbjct: 1083 G-----IPIDSIPMNDPKVYSLLTSPEALGVTPEQIDSQTGTF-GIPEMGTNFVRGMLVE 1136

Query: 650  YRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGY 705
             RP     ++  +   +G +    +   LI         VI  ++ +M       L    
Sbjct: 1137 ARPKNFSELIQISGLSHGTDVWTGNADELIRSGTCTIAEVIGCRDSIMLYLLRKGLEPKM 1196

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +    + +R+    K           F  G  +      +     E   K   Y F K+H
Sbjct: 1197 AFDIMEAVRKGKVAK---------GGFKDGWEEAMREHEVPDWYIESCRKI-KYMFPKAH 1246

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------------- 800
            A AY + + +  W K + P EF A   T+  D+++                         
Sbjct: 1247 AVAYLMSAIRLMWFKIYRPPEFYAVYFTVRGDDIDYEAAVGGAAVARAHMEEVKRRLKEE 1306

Query: 801  KIKK---------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTA 850
            K  K            +      + +P  +       + V D ++    +++KG+G   A
Sbjct: 1307 KNAKDEDVLVSLQLVNEMLVRGYEFLPIELGKSRGSKYVVEDGKVRLPFSSLKGLGGAAA 1366

Query: 851  RHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              + + +     + S+E+      +  +   +L+ L   GAL   
Sbjct: 1367 DALEKVTIHGEEYISVEELQQ---ASGVGSSILDRLRQVGALGDL 1408



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           V L +H+  S ++G      I+        PA+AITD        E    A
Sbjct: 307 VELHLHTKLSSMDGFCDPGGIVKLAHRMGHPAVAITDHGVCQGYPEAMLAA 357


>gi|160947401|ref|ZP_02094568.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
 gi|158446535|gb|EDP23530.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
          Length = 1431

 Score =  370 bits (949), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 186/957 (19%), Positives = 332/957 (34%), Gaps = 201/957 (21%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT--VPSIVLLVSTAEGYQRLIELV 116
            ++      ++ I   + +  + D      + K P       + ++ V   E      ++V
Sbjct: 565  AEACAGILLELIKIVEKEGKVFDENINNIETKWPVAKNISYNSIIYVKKMEALSGFYKMV 624

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S   L+   ++      S L+E   EGL++ +G   G + RAF    S+     +  F  
Sbjct: 625  SEG-LMKYFRRVAGFPKSRLKEY-REGLLIGSGNWDGELFRAFIEEKSEEEILEIAKFYD 682

Query: 177  LFGDRLYVNLQRH------RGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             F  +   NL+           D  +E   ++ +L    +  +VAT N  +L + DY   
Sbjct: 683  FFEIQPISNLKHLFFRGKVLSIDDLKEINKKIYELGKKLDKLVVATGNVKYLDKNDYIFR 742

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQ 286
            +V++       + ++         Y +   EM   FS L   EA E  V+       +L+
Sbjct: 743  NVILYGQGRKNLEKEG------SFYFRTTDEMFDEFSYLGKDEAYEVVVKNTNIFKDMLE 796

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               PI         +      + ELR       +    +         +    RL+ EL+
Sbjct: 797  DILPIPNGTYPPFIEG----SDEELRKICYDKAKSIYGENL------PKIVEDRLERELS 846

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL-------- 398
             I +  ++  ++I    +  +  +   VG  RGS   S  A    IT+++PL        
Sbjct: 847  SIIKNGYAVLYIIAQKLVWRSNDDGYLVG-SRGSVGSSFAATMAGITEVNPLIPHYICPK 905

Query: 399  ---------------------------------RFSLLFERFLNPDRMSMPDFDIDFCQD 425
                                                + FE FL  D    PD D++F  +
Sbjct: 906  CKYSEFHEEYSGQSGVDMPDKECPHCKINMSKEGHDIPFEVFLGFDGDKEPDIDLNFAGE 965

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +    +Y +  +G ++V +  T G++  K A   V +                      
Sbjct: 966  YQSTCHKYTEELFGSDKVYRAGTIGTISDKTAFGYVKK---------------------- 1003

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLV 543
                        F E +    +   +    +K+ G+ R +  H  G++I    + +    
Sbjct: 1004 ------------FVEEKEISLTAGNIRRYVRKIVGVKRTSGQHPGGVMIVPHNKEIYDFT 1051

Query: 544  PMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+     D  S+   T F+ K I    ++K D LG    T+++   D        VD   
Sbjct: 1052 PIQYPADDPTSETKTTHFSYKSI-SGRILKLDLLGHDVPTIIKHLGDLTG-----VDPLN 1105

Query: 601  IPFDDHETYHLLTTKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            IP DD ET ++  +                TLGI +  ++ +RQ L   +P  + ++I +
Sbjct: 1106 IPMDDKETLNIFYSTDSLKLMDNKYKDSVGTLGIPEYGTNFVRQMLLDTRPKTLTELIRI 1165

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLS 703
              L     +          N +E I    PL + +          ++ +M       L +
Sbjct: 1166 SGLSHGTDVWLG-------NAQELIKKGIPLNETIC--------TRDDIMTFLIFKGLEN 1210

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
              S    + +R+   K + EE +           +NGI +    +  ++      Y F K
Sbjct: 1211 KRSFKIMETVRKG--KSLDEETESY-------MRENGIPEWYIESCKKI-----KYLFPK 1256

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV-------------EKIKKF----- 805
            +HA AY ++SY+ A+ K HYP  F A   T ++DN               K+K+      
Sbjct: 1257 AHAVAYVMMSYRIAYFKVHYPEAFYATYFTTKIDNYPGNLIFKGLTAIQTKMKEIEELGK 1316

Query: 806  ---------------CQDARQFNIQIMPPSVNTPC-VDFKV-GDNRIYYSLAAIKGVGTT 848
                            ++     I      +       F + G+ +I     A+  V   
Sbjct: 1317 LASQKEQDVYDILEVAEEMYLRGIVASKVDLERSDSSRFLIDGNGKILPPFRALDFVSDV 1376

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
             +  I E     PF S+EDF  R    K+N+  LESL   G L+    +    L  L
Sbjct: 1377 NSVSIYEEVRKLPFISIEDFQERT---KINKNALESLREHGVLNKLQETNQVSLFDL 1430



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 10/62 (16%)

Query: 1   LTQYLEKSPSFV----------HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           +   +EKS SFV           L ++S  S L+G ++L  +  ++       + +TD  
Sbjct: 311 MIDGMEKSSSFVYIDNAPEKRVELHLNSQMSGLDGCVNLEVLKSRLEEMGHTGVGVTDIG 370

Query: 51  NL 52
            +
Sbjct: 371 VV 372


>gi|160902203|ref|YP_001567784.1| DNA polymerase III, alpha subunit [Petrotoga mobilis SJ95]
 gi|160359847|gb|ABX31461.1| DNA polymerase III, alpha subunit [Petrotoga mobilis SJ95]
          Length = 802

 Score =  368 bits (945), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 181/632 (28%), Positives = 322/632 (50%), Gaps = 59/632 (9%)

Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
           + ++RL +ELN+I ++K   Y L V   +  AKKN I VGPGRGS  GS   Y L IT +
Sbjct: 172 EEKRRLSYELNIIKKLKVENYILTVKKIVDTAKKNGISVGPGRGSAVGSFLVYKLGITKV 231

Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
           +P+ + LLFERFLN  R  +PD D+D   ++R ++I+ +Q ++G  +++QI T+ +++ K
Sbjct: 232 NPIEYDLLFERFLNEYRHELPDIDLDIDAEKRVDLIKALQKEFGENKISQIRTYSTMKIK 291

Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
           +AL+     L                +      +++  +  +F+     +         +
Sbjct: 292 SALKKAEELLGYNL------------EAKINTPIRSKENIDKFKSLSQKE---KTFFYAA 336

Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
             LEG+    S HAAG++I    L    P+ +    ++P+ ++ M  ++  G+ KFD L 
Sbjct: 337 YYLEGIEVAESVHAAGLIISQNDLRTFSPLEKK---EVPIIEWEMSDLKYLGVEKFDILA 393

Query: 576 LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
           L TLT L++    + ++           +D +T+H L+   T GIFQL+S   ++  + +
Sbjct: 394 LDTLTFLKRLQ--IKEKYR-------ELNDSKTFHYLSKGLTKGIFQLDSKLGQKLAQRI 444

Query: 636 QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
           +P   E++I L+++ RPGP+++ +   ++    +        +  +  ET+GV++YQEQ+
Sbjct: 445 KPKNFEELILLLAINRPGPLESGM--IDQYVNDDSPEY----LKKIFSETKGVLVYQEQI 498

Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           M+IAQ+L  +S  E+D+LR+A+ KK K+++   K +F++ ASK  I +  A  +F  +  
Sbjct: 499 MKIAQILGEFSPQESDLLRKAVSKKEKDKITTFKNKFVTNASKK-IDEKEATLLFSQIEN 557

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
           FA Y FNKSHA AYA I+Y  +  K   P  F    + ++  +V+       +A    ++
Sbjct: 558 FAQYAFNKSHAVAYAHITYWLSEKKFKDPSNFFLEYVKIKGVDVD----VINEASVLGVK 613

Query: 816 IMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
           I  P +  P   F +     +   L  IKG+G   ++   EA       SLE+F + + +
Sbjct: 614 IKLPDIRYP---FGLASETELILPLYIIKGIGRNVSQIFEEAKL----LSLENFFNFIIN 666

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKG 932
           K +NR ++E ++ +GALD F  +R  LL+      +  +   +   +    +F    +K 
Sbjct: 667 KNINRNIVELIIKSGALDYFNNNRKNLLR---ETTQRVKGKVQQLEDIKSTLFGEREQKS 723

Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
           T   + TL+  +        + E   +GF  S
Sbjct: 724 TKKVETTLQDLA--------QYEIESIGFPLS 747


>gi|297520689|ref|ZP_06939075.1| DNA polymerase III subunit alpha [Escherichia coli OP50]
          Length = 305

 Score =  367 bits (943), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 149/305 (48%), Positives = 212/305 (69%), Gaps = 12/305 (3%)

Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
             AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+  
Sbjct: 1   YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKS 60

Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTKG 616
            +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +L    
Sbjct: 61  DVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSE 120

Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI 674
           T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E+I   
Sbjct: 121 TTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYP 180

Query: 675 -----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
                H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EEM KQ+
Sbjct: 181 DVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQR 240

Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+A
Sbjct: 241 SVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMA 300

Query: 790 ASMTL 794
           A MT 
Sbjct: 301 AVMTA 305


>gi|487436|gb|AAA18178.1| DNA polymerase III [Mycoplasma pulmonis]
 gi|1090178|prf||2018296A DNA polymerase III
          Length = 1435

 Score =  367 bits (941), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 157/899 (17%), Positives = 313/899 (34%), Gaps = 174/899 (19%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             I ++     G + L ++ S + L      + ++    ++   ++ L++ +GG + P+  
Sbjct: 596  DISIIAKNQAGLKELFKINSDV-LTKYYFANPKMFWEDIKR--SKNLLIGSGGLNSPLID 652

Query: 158  AFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQVVQL---AYTHELPLV 212
               F++ +     +  +   ++     + +    +  D+  + Q+ +L   A      +V
Sbjct: 653  KLLFSTQEDVLNEIDKYDYIEIPSPNNFSHFWTTKFSDQQIKIQLQKLIKWAKEKNKIIV 712

Query: 213  ATNNSLFLSEEDYEAHDVLMAVA------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
            A     +  +     H++ +         H   + +KD     P+   K  +EM   FS 
Sbjct: 713  AIGEPRYNEKWQKIIHEIYINSTGIENSLHPLFIIKKDMDTFYPEQIYKTTNEMKQEFSF 772

Query: 267  L--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
            L  PE +E  V  +   S  ++    I  +    + DD       +L+         +  
Sbjct: 773  LYDPELIEEIVVKSNLISSQIEKIQVIKDKLYTPKFDDSHI----KLKKLVYENAWKKYG 828

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +         +   QR++ EL  I    F   + I +  +Q +  +   VG  RGS   S
Sbjct: 829  KNL------PEIIEQRIEKELTPILNYGFDVIYWISSILVQKSLSDGYLVG-SRGSIGSS 881

Query: 385  VTAYALTITDIDPLRFSL-----------------------------------------L 403
            + A    IT+++PL                                              
Sbjct: 882  LVATLSGITEVNPLAPHYICSKCQYFELVKDPMTNSGFDLDDKKCPKCNSFLDKDGQTIP 941

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL      +PD D++F  + + ++   V+  +G +   +  T  ++  K A   + +
Sbjct: 942  FETFLGFKADKVPDIDLNFSGEYQGKIHDEVKRLFGSKHTFRAGTISTVAEKTAYGYIKK 1001

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             L                                      +D  VD L E S    G+ R
Sbjct: 1002 YL-------------------------------ETASLDYSDNFVDFLTEKS---TGVKR 1027

Query: 524  HASTHAAGIVIGDR--PLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                H  GI+I  +   +    P+     D  S    T F+   I    ++K D LG   
Sbjct: 1028 TTGQHPGGIIIIPKEFDVEDFTPVNFPANDTESSWKTTHFDFHAIHD-NVLKLDILGHDD 1086

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
             T L+            V++  IP  D +   + T+   LGI   E  G +    G+   
Sbjct: 1087 PTALKMLEKLTG-----VNVKDIPKKDEKIISIFTSPKALGISSEEILGEKTGALGIPEF 1141

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKE-KIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
                +  ++S  +P    ++V  +   +G +  I + H +I  + K    VI  ++ +M 
Sbjct: 1142 GTNFVRQMLSEAKPKTFADLVSISGLSHGTDVWINNAHYIIQSLGKTLDQVISCRDDIMV 1201

Query: 698  IAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
                       S +  + +R+  G      ++++KE+ I    +N           E + 
Sbjct: 1202 DLIKKGVPIDLSFTIMEQVRKGKGL----SLEQKKEKLIEHGIENWY--------IESME 1249

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------K 801
            K   Y F K+HA AY +++++ A+ K +YP+E+ A   +   +  +             K
Sbjct: 1250 KI-KYMFPKAHATAYVLMAWRVAFYKVYYPLEYYATYFSTRTEFFDIEIMSKDKLTLESK 1308

Query: 802  IKK------------------------FC-QDARQFNIQIMPPSVNTPCVDFKV---GDN 833
            IK+                        +   + +     I   ++     +  +      
Sbjct: 1309 IKELAYRENLRNDNQLTTKEKNTLPTLYIANEMKARGFNIQNINLKISLANDWIIDKNSK 1368

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             +      I G+G T A+ I+++  +K F S+EDF +R     +N  ++E     G  +
Sbjct: 1369 SLIPPFNVIDGLGETLAQKIVDSRNEKEFLSVEDFINRT---GINSTLVEKFKSMGIFE 1424



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           + L   S  S ++G LS  +I+ +       +IAI D N++ +  +F  
Sbjct: 312 IELSFRSKMSTMDGILSPLDIVKQAKKFNHSSIAILDHNSVQAFPDFHN 360


>gi|157363879|ref|YP_001470646.1| DNA-directed DNA polymerase [Thermotoga lettingae TMO]
 gi|157314483|gb|ABV33582.1| DNA-directed DNA polymerase [Thermotoga lettingae TMO]
          Length = 844

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 185/650 (28%), Positives = 299/650 (46%), Gaps = 95/650 (14%)

Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              Y+ R + E+ +I +M    YF  V   +  A+  NI VGPGRGS  GS+ A+ L IT
Sbjct: 170 PPGYQPRFESEVEIIEKMNLESYFYTVKKIVDTARSMNICVGPGRGSAVGSLVAFILGIT 229

Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            IDP++  LLFERFLN  R   PD DID    +R  +I  +   +     AQI +F +  
Sbjct: 230 QIDPVKHDLLFERFLNEYRQEPPDIDIDVEDRKRSMLIEQLIRVFPF--CAQISSFST-- 285

Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
                                            +SL++I  ++R     + D  +  L +
Sbjct: 286 ---------------------------------LSLKSINAEARRLNLTIKDEHIKLLNK 312

Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
                  L    S HAAG++I +  L+  +PM RD  S+  + +++M  ++  G+ K D 
Sbjct: 313 -------LPYRRSVHAAGLIIANEVLN--LPMVRD--SNFRILEYDMDSLQGIGVTKIDL 361

Query: 574 LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
           LGL TLT++      L        +  +P DD  TY ++++  T GIFQLES  +R    
Sbjct: 362 LGLTTLTMISNMKKTLK-------IDSVPVDDFSTYEMISSGKTTGIFQLESLPVRSLCR 414

Query: 634 GMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            ++P    ++  L+++ RPGP       +Y  RK G  +        + +  ET GV+IY
Sbjct: 415 QVRPQEFNELSVLLAINRPGPLIARLNRIYAERKRGCNR-----EYHEDLFPETFGVVIY 469

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QEQ+M++A  ++  S +E+D+ R+AM  K +  M    E+  +     G SK+    +  
Sbjct: 470 QEQIMKLAMSMADMSPAESDLFRKAMSHKDRLIMKAAVEKLRNKMIDKGYSKSFVNELAN 529

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
           +L +F+ Y FNKSH+ AYA++SYQ A++K H+P  F    +    ++  K+    Q+ R 
Sbjct: 530 ILIQFSSYAFNKSHSVAYAMLSYQLAYIKNHFPKVFFQHYIKEHSNDPSKVFAAVQELRT 589

Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              +++ PSVN   VD K    +    + AI GVG++  + + +  A  PF+ ++DF  +
Sbjct: 590 TGFEVIQPSVN--PVDLKEDQFQ--LPMEAIAGVGSSVVQ-LCQNRA--PFEDIQDFAKK 642

Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI---FA 928
                     ++ L  AGA DC  ++R       +N  K     +K        I   F 
Sbjct: 643 TSL---PLSTIQRLAHAGAFDCIYHTR-------ENSIKAFNSFQKGFDPSLLEISTVFG 692

Query: 929 HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
             +  F   +T             + E++V GF     PL  +K  L + 
Sbjct: 693 KRESRFDTNMTHIDI--------LKLEEQVYGF-----PLTPFKTYLSRK 729



 Score = 44.6 bits (104), Expect = 0.098,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 18 SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          S YS     L L  +++   +    ++ + D  N  + + F++   + GI P+ 
Sbjct: 7  SPYSFEGSILRLEEVVNAAKSFGLKSLMLADQ-NFHACVHFNKICRSNGIIPVH 59


>gi|15829146|ref|NP_326506.1| DNA polymerase III PolC [Mycoplasma pulmonis UAB CTIP]
 gi|14424449|sp|P47729|DPO3_MYCPU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|14090090|emb|CAC13848.1| DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII) [Mycoplasma
            pulmonis]
          Length = 1435

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 157/900 (17%), Positives = 309/900 (34%), Gaps = 176/900 (19%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             I ++     G + L ++ S + L      + ++    ++   ++ L++ +GG + P+  
Sbjct: 596  DISIIAKNQAGLKELFKINSDV-LTKYYFANPKMFWEDIKR--SKNLLIGSGGLNSPLID 652

Query: 158  AFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQVVQL---AYTHELPLV 212
               F++ +     +  +   ++     + +    +  D+  + Q+ +L   A      +V
Sbjct: 653  KLLFSTQEDVLNEIDKYDYIEIPSPNNFSHFWTTKFSDQQIKIQLQKLIKWAKEKNKIIV 712

Query: 213  ATNNSLFLSEEDYEAHDVLMAVA------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
            A     +  +     H++ +         H   + +KD     P+   K  +EM   FS 
Sbjct: 713  AIGEPRYNEKWQKIIHEIYINSTGIENSLHPLFIIKKDMDTFYPEQIYKTTNEMKQEFSF 772

Query: 267  L--PEALENTVE-IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            L  PE +E  V       S  ++    I  +    + DD       +L+         + 
Sbjct: 773  LYDPELIEEIVVKNPNLISSQIEKIQVIKDKLYTPKFDDSHI----KLKKLVYENAWKKY 828

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
             +         +   QR++ EL  I    F   + I +  +Q +  +   VG  RGS   
Sbjct: 829  GKNL------PEIIEQRIEKELTPILNYGFDVIYWISSILVQKSLSDGYLVG-SRGSIGS 881

Query: 384  SVTAYALTITDIDPLRFSL----------------------------------------- 402
            S+ A    IT+++PL                                             
Sbjct: 882  SLVATLSGITEVNPLAPHYICSKCQYFELVKDPMTNSGFDLDDKKCPKCNSFLDKDGQTI 941

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL      +PD D++F  + + ++   V+  +G +   +  T  ++  K A   + 
Sbjct: 942  PFETFLGFKADKVPDIDLNFSGEYQGKIHDEVKRLFGSKHTFRAGTISTVAEKTAYGYIK 1001

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            + L                                      +D  VD L E S    G+ 
Sbjct: 1002 KYL-------------------------------ETASLDYSDNFVDFLTEKS---TGVK 1027

Query: 523  RHASTHAAGIVIGDR--PLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H  GI+I  +   +    P+     D  S    T F+   I    ++K D LG  
Sbjct: 1028 RTTGQHPGGIIIIPKEFDVEDFTPVNFPANDTESSWKTTHFDFHAIHD-NVLKLDILGHD 1086

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
              T L+            V++  IP  D +   + T+   LGI   E  G +    G+  
Sbjct: 1087 DPTALKMLEKLTG-----VNVKDIPKKDEKIISIFTSPKALGISSEEILGEKTGALGIPE 1141

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE-KIVSIHPLIDPMLKETQGVIIYQEQVM 696
                 +  ++S  +P    ++V  +   +G +  I + H +I  + K    VI  ++ +M
Sbjct: 1142 FGTNFVRQMLSEAKPKTFADLVSISGLSHGTDVWINNAHYIIQSLGKTLDQVISCRDDIM 1201

Query: 697  QIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
                        S +  + +R+      K    +QK + I    +N           E +
Sbjct: 1202 VDLIKKGVPIDLSFTIMEQVRKG-----KGLSLEQKRKLIEHGIENWY--------IESM 1248

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------- 800
             K   Y F K+HA AY +++++ A+ K +YP+E+ A   +   +  +             
Sbjct: 1249 EKI-KYMFPKAHATAYVLMAWRVAFYKVYYPLEYYATYFSTRTEFFDIEIMSKDKLTLES 1307

Query: 801  KIKK------------------------FC-QDARQFNIQIMPPSVNTPCVDFKV---GD 832
            KIK+                        +   + +     I   ++     +  +     
Sbjct: 1308 KIKELAYRENLRNDNQLTTKEKNTLPTLYIANEMKARGFNIQNINLKISLANDWIIDKNS 1367

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              +      I G+G T A+ I+++  +K F S+EDF +R     +N  ++E     G  +
Sbjct: 1368 KSLIPPFNVIDGLGETLAQKIVDSRNEKEFLSVEDFINRT---GINSTLVEKFKSMGIFE 1424



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           + L   S  S ++G LS  +I+ +       +IAI D N++ +  +F  
Sbjct: 312 IELSFRSKMSTMDGILSPLDIVKQAKKFNHSSIAILDHNSVQAFPDFHN 360


>gi|218680670|ref|ZP_03528567.1| DNA polymerase III, alpha subunit [Rhizobium etli CIAT 894]
          Length = 521

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 136/540 (25%), Positives = 227/540 (42%), Gaps = 34/540 (6%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           ++  P+F  +   +++S LEGA S   ++ + A  +   + I D N++   +    +A  
Sbjct: 2   MKSEPAFFEIGARTNFSFLEGASSPEEMVVQAAHLRLGGLGIADRNSVAGVVRAHAQALQ 61

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPF-----------PTVPSIVLLVSTAEGYQRLI 113
              +        +   +      +   P               P I+       G+  L 
Sbjct: 62  LEERYRNR-DAIMAQAEREGKKEKIVDPIRIQPGARLVFSDDTPDILAYPRNRRGWANLC 120

Query: 114 ELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
            L+S   L ++  K    +  + L E G E ++ L    +    +A         E  L 
Sbjct: 121 RLLSAGNLKEEAVKGDCILTEAELMEWGDEMMLALVPDRTLVESKA----GQSALENYLE 176

Query: 173 TFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            F++ FG   Y+ L   + G DR   + +  LA  + LPL+ATN  L+   E     DV+
Sbjct: 177 RFRRRFGKAFYMALAPAYDGRDRQVFAVLAMLAARNRLPLIATNQPLYHHPERRPLSDVV 236

Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
           +A+     ++Q         + YLK+  EM  IF D P A+ENT     + SF L     
Sbjct: 237 IAIREHVEIAQAGFLLAPNAERYLKDSREMARIFRDYPAAIENTRAFFGKLSFSLTELEH 296

Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             P       +D  +  +  L      G   R  QG   K        +++D+EL +I  
Sbjct: 297 NYPP-----ENDPGETPQETLERLTRTGAAKRYPQGIPDK------VAKQIDYELKLIGE 345

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            K++ YFL V   I+ A+     +  GRGS A SV  Y L IT++DP + +LLF+RF++ 
Sbjct: 346 KKYASYFLTVHRIIRHARYELKVLCQGRGSAANSVICYCLEITEVDPQKSTLLFDRFISM 405

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
           DR   PD D+DF  DRR+EVI+Y+   Y  E         + + ++A R+V +A  +   
Sbjct: 406 DRDEPPDIDVDFEHDRREEVIQYIYKTYTREHAGLTAGVTTYRTRSAGREVAKAFGLSED 465

Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
               +  L+       +S      D++     + DP    +L+ + +L G  RH + H  
Sbjct: 466 VQSAISSLVWGWSEDNLS----ERDAKAAGLDIKDPVTRNVLKYASELLGFPRHLTQHVG 521


>gi|19548858|gb|AAL90826.1| polymerase III subunit alpha [Escherichia coli]
          Length = 302

 Score =  358 bits (918), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 136/303 (44%), Positives = 203/303 (66%), Gaps = 13/303 (4%)

Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
           LNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  
Sbjct: 1   LNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGH 60

Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
           PY  VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  
Sbjct: 61  PYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGK 119

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+
Sbjct: 120 HAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALE 179

Query: 588 FLAQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            + +R        +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED
Sbjct: 180 MINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFED 239

Query: 643 IIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQV 695
           +IALV+L+RPGP+ + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQV
Sbjct: 240 MIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQV 299

Query: 696 MQI 698
           MQI
Sbjct: 300 MQI 302


>gi|325479569|gb|EGC82665.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
            prevotii ACS-065-V-Col13]
          Length = 1369

 Score =  356 bits (915), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 158/940 (16%), Positives = 312/940 (33%), Gaps = 198/940 (21%)

Query: 57   EFSQKACAAGIQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPS----IVLLVSTAEGYQR 111
              S  A A     I      + M   +L   N+ K+  P        + +      G + 
Sbjct: 496  RASDDARATAQIFIKMFDRIMKMNGISLSNINKLKSYRPKAKHEYFSVTVYAKNKTGLKN 555

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L +L+S   + +      +  +S L++   EGLI+ +G   G +        ++    ++
Sbjct: 556  LYKLISESRM-NHFNNEAKTPISVLEKY-REGLIVGSGADEGILFYYLAQGRNKSDINKI 613

Query: 172  LTFKK--------LFGDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLS 221
                         +F D   +N  R R +D+ R     ++ +A       VAT    +L 
Sbjct: 614  RDMFDFYQLAPLGVFSDE--INKGRLRDFDQVRQINKNILAMAKEDNKLAVATGAVRYLE 671

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR-- 279
            ++DY   ++L    +      +      P +Y +   EM+  FS L    +  V I    
Sbjct: 672  KDDYILRNILHKGQYFKYHESE------PLYYFRTTKEMLDEFSYLTPLDQEDVVIRNPK 725

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
            +   +++   PI       + +      + ELR              +I      +    
Sbjct: 726  KIVELIEDIRPIPKGTFPPKIEG----SDKELRETCFNKAH------SIYGDPLPKIVED 775

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL+ ELN I    ++  ++I    +  +  +   VG  RGS   S  A    IT+++PL 
Sbjct: 776  RLNRELNSIISNGYAVLYIIAKKLVGKSNDDGYLVG-SRGSVGSSFAATMADITEVNPLS 834

Query: 400  -----------------------------------------FSLLFERFLNPDRMSMPDF 418
                                                      ++ FE FL  +    PD 
Sbjct: 835  PHYVCPSCKHSEFFEDDLLGAGIDYPDKVCPECGTMMKKDGHNIPFEVFLGFEGDKEPDI 894

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +  + +Y +  +G  +V +  T G++Q   A   + +               
Sbjct: 895  DLNFAGEYQPTIHKYTEELFGEGKVFRAGTIGAIQDNTAFGYIKKYS------------- 941

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                 E    + +  ++ +I + L+ + R    H  G+++    
Sbjct: 942  ---------------------EDYDVEFTNAQIRKIQRGLKDVKRTTGQHPGGLIVVPDD 980

Query: 539  L--SQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            +    + P+     D R D+  T F    + +  L+K D LG    ++++   D      
Sbjct: 981  IEIFDICPIQYPADDGRGDIKTTHFTYNMMHET-LLKLDLLGHDVPSIIRALQDLTGTNP 1039

Query: 594  VKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDC 639
            +++ +      D +   + ++               GTLGI +  ++ +R  L+   P  
Sbjct: 1040 LEITMG-----DPKVMKIFSSTETLDIKHDFSNNEIGTLGIPEFGTNFVRGMLKDAYPTK 1094

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
              ++  +  L     +      +  +NG      I    D ++                 
Sbjct: 1095 FSEMTRISGLSHGTDVWLNNAQDLVRNGTASFDEIISTRDDIMNALIQ-----------Q 1143

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
             L    S S  + +R+       E +   +E        N + +    +  ++      Y
Sbjct: 1144 GLDKKKSFSIMEKVRKGKPL-SDEILSYMRE--------NNVPEWYIESCLKI-----QY 1189

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQDAR 810
             F K+HA AY ++SY+ A+ K +YP  F A     ++++          E I+K   + R
Sbjct: 1190 LFPKAHAVAYCLMSYRIAYYKVYYPEAFYATYYNTKINDFKYSTIIKGLESIQKALDEVR 1249

Query: 811  Q-----------------------FNIQIMPPSVNTP-CVDFKVGDNRIY--YSLAAIKG 844
                                     +I++    +       F + D + Y    L+++  
Sbjct: 1250 DSFDLSQRDKQIRTVLEVAEEMAARDIKLEKADIYKSDATKFLLSDRKGYILPPLSSVDD 1309

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            V    A  I+       F S+ED   R    K     L+S
Sbjct: 1310 VSEAMAYDIVRERDKGEFISIEDLKQRTSVNKNALNSLKS 1349



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 42/88 (47%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L+VH+  + L+G +   ++++ + A +  A+ ITDT  L +  +        GI+ + 
Sbjct: 261 VELEVHTKMTNLDGFVDNKDLINTLKAWKMDAVGITDTETLQALPDLYDALSKEGIRMLP 320

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
           G +L +   +   +TN      P V  I
Sbjct: 321 GAELLLVEDELRVLTNLSDKNIPDVSDI 348


>gi|325847082|ref|ZP_08169908.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481054|gb|EGC84099.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 1010

 Score =  355 bits (912), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 155/896 (17%), Positives = 314/896 (35%), Gaps = 202/896 (22%)

Query: 100 VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
           ++     +G + L +++S   +     ++       L     EGLI+ +GG  G + +A 
Sbjct: 188 IIFAKNYQGLKNLYKIISDSRMKYFNLEAK--TPFDLVSKNKEGLIIGSGGKDGLLFKAI 245

Query: 160 FFNSSQVAEKRLLTFKK--------LFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPL 211
             + S+     +  F          +F D L     R++        ++++L   H+  +
Sbjct: 246 RDDYSEEKIDEICEFFDFFQIEALGVFADDLENGSIRNKEQIIEINKKIIELGKKHDKLV 305

Query: 212 VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
           VAT +  ++ ++DY   ++L                  P +YLK  +EM+  F  L +  
Sbjct: 306 VATGSVRYMEKKDYVLRNILHKGQFFHYREN------NPLYYLKTTNEMLDEFYYLDDQT 359

Query: 270 ----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
                ++NT++I+ +   I+ +     P  IE       K  ++    KA+         
Sbjct: 360 KMEVVIDNTIKISDQIESIMPIPHETFPPKIEGS----DKRLKDTTYEKAI--------- 406

Query: 326 GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
            +I      +  + RLD EL+ I    ++  ++I  + ++ + ++   VG  RGS   S 
Sbjct: 407 -SIYGDPLPELVKTRLDKELDSIISNGYAVLYIIAKELVEKSNRDGYLVG-SRGSVGSSF 464

Query: 386 TAYALTITDIDPL-----------------------------------------RFSLLF 404
            A    IT+++PL                                            + F
Sbjct: 465 AATMANITEVNPLAPHYICPNCKHSEFITDGSIGAGIDLPDKTCPKCGTEMNKDGHDIPF 524

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           E FL  +    PD D++F  + +  + +Y +  +G  +V +  T G+++   A   + + 
Sbjct: 525 EVFLGFEGDKEPDIDLNFAGEYQPTIHKYTEELFGEGKVFRAGTIGTIKDNTAFGYIKKY 584

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
           +                                  E  L++  + +     + L  + R 
Sbjct: 585 M-------------------------------EDNELTLSNAQIRK---YQRGLFDVKRT 610

Query: 525 ASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
              H  G++I   D+ +    P+     D + D+  T F    +    ++K D LG    
Sbjct: 611 TGQHPGGLMIVPNDKEIYDFSPVQYPADDGKDDIKTTHFTYNMMHGV-ILKLDLLGHDVP 669

Query: 580 TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLES 625
           T+++   D         D   +  DD    ++ ++               GTLGI +  +
Sbjct: 670 TIIRSLQDL-----TNTDPLKLQMDDENVMNIFSSTKPLNIKYDFSNNEIGTLGIPEFGT 724

Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
           S +R  L+   P    ++  +  L       ++ + N +            L+       
Sbjct: 725 SFVRGMLKDTFPTKFSEMTRISGLSHGT---DVWLNNAQ-----------DLVKSKTAGF 770

Query: 686 QGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
             +I  ++ +M     L      S    + +R+   K++ EE            + N + 
Sbjct: 771 DQIISTRDDIMNSLINLGLDKKKSFQIMEKVRKG--KELSEE------------TLNYMR 816

Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV--- 799
           +    + +        Y F K+HA AY ++SY+ A+ K +YP  F A   + ++++    
Sbjct: 817 ENKVPDWYIDSCLKIKYLFPKAHAVAYCLMSYRIAYYKVYYPKAFYATYFSTKLNDFQYS 876

Query: 800 -------------------EKIKK----------FCQDARQFNIQIMPPS-VNTPCVDFK 829
                              EK  +            ++    +I+I       +  V F 
Sbjct: 877 VIVKGLKSIQYALNEINQLEKPTQREKNLRSLLEVAEEMAARDIKIKKADLYKSEAVKFI 936

Query: 830 V-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
           +  D  I   L+A+  V    A+ ++E      F S+ED   R    K     L++
Sbjct: 937 LDEDGEILPPLSAVDDVSEAMAKDVVEEREKAKFISIEDLKKRTSLNKNALNSLKN 992


>gi|41817811|gb|AAS11663.1| polymerase III subunit alpha [Escherichia coli]
 gi|41817813|gb|AAS11664.1| polymerase III subunit alpha [Escherichia coli]
 gi|41817815|gb|AAS11665.1| polymerase III subunit alpha [Escherichia coli]
 gi|41817817|gb|AAS11666.1| polymerase III subunit alpha [Escherichia coli]
 gi|41817821|gb|AAS11668.1| polymerase III subunit alpha [Escherichia coli]
 gi|41817823|gb|AAS11669.1| polymerase III subunit alpha [Shigella boydii]
 gi|41817825|gb|AAS11670.1| polymerase III subunit alpha [Shigella boydii]
 gi|41817829|gb|AAS11672.1| polymerase III subunit alpha [Shigella dysenteriae]
 gi|41817831|gb|AAS11673.1| polymerase III subunit alpha [Shigella boydii]
 gi|41817833|gb|AAS11674.1| polymerase III subunit alpha [Shigella sonnei]
          Length = 300

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 134/301 (44%), Positives = 201/301 (66%), Gaps = 13/301 (4%)

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
           P+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY
Sbjct: 1   PERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPY 60

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
             VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA
Sbjct: 61  GFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHA 119

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +
Sbjct: 120 GGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI 179

Query: 590 AQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            +R        +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+I
Sbjct: 180 NKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMI 239

Query: 645 ALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQ 697
           ALV+L+RPGP+ + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQ
Sbjct: 240 ALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQ 299

Query: 698 I 698
           I
Sbjct: 300 I 300


>gi|257066105|ref|YP_003152361.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
 gi|256797985|gb|ACV28640.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
          Length = 1365

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 159/960 (16%), Positives = 325/960 (33%), Gaps = 198/960 (20%)

Query: 57   EFSQKACAAGIQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPS----IVLLVSTAEGYQR 111
              S  A A     I   ++ ++    NL   N+ K+ +P          +      G + 
Sbjct: 492  RASDDARATAQIFIKMFKMIMEEDGINLSTINKLKSHWPKSKHEYFSATVYAKDKVGLKN 551

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L +L+S   + +      +  +S L++   EGL++ +G   G +        S+    R+
Sbjct: 552  LYQLISESRM-NYFNSEAKTPISVLEKY-REGLLVGSGSDEGILFSHLQNKRSKRDLNRI 609

Query: 172  LTFKKLFGD------RLYVNLQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEE 223
                  +           VN  + R  D+      Q++  A       VAT    +L ++
Sbjct: 610  RDLFDFYQMAPLGIYNDMVNKGKIRDIDQVIEINKQILDFAKEDNKLAVATGAVRYLEKD 669

Query: 224  DYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRC 281
            DY   ++L    +      +      P +Y +   EM+  FS L   +A +  +   R+ 
Sbjct: 670  DYILRNILHKGQYFRYHEDE------PLYYFRTTREMMDDFSYLNPIDAEDVVIRNPRKI 723

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
              +++   PI       + +      + ELR+   A         +I      +    RL
Sbjct: 724  VDMIEDIRPIPKGTFPPKIEG----SDKELRDTCFAKAH------SIYGDPLPKIVEDRL 773

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-- 399
            + ELN I    ++  ++I    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 774  NRELNSIISNGYAVLYIIAKKLVGKSNEDGYLVG-SRGSVGSSFAATMADITEVNPLSPH 832

Query: 400  ---------------------------------------FSLLFERFLNPDRMSMPDFDI 420
                                                    ++ FE FL  +    PD D+
Sbjct: 833  YVCPNCKHSEFFEEDLLGAGIDYPDKACPECGTMMKKDGHNIPFEVFLGFEGDKEPDIDL 892

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  + +  + +Y +  +G  +V +  T G++Q   A   + +                 
Sbjct: 893  NFAGEYQPTIHKYTEVLFGEGKVFRAGTIGAIQDNTAFGYIKKY---------------- 936

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                           S   +    +  V ++    + L+ + R    H  G+++    + 
Sbjct: 937  ---------------SEDYQVEFTNAQVRKIQ---RGLKDVKRTTGQHPGGLIVVPDDID 978

Query: 541  --QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
               + P+     D   D+  T F    + +  L+K D LG    ++++   D      ++
Sbjct: 979  IFDICPIQYPADDGSGDIKTTHFTYNMMHET-LLKLDLLGHDVPSIIRALQDLTGTNPLE 1037

Query: 596  VDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDCIE 641
            + +      D +   + ++               GTLGI +  ++ +R  L+   P    
Sbjct: 1038 ITMG-----DPDVMKIFSSTESLDIKHDFSNNEIGTLGIPEFGTNFVRSMLKDTFPTKFS 1092

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            ++  +  L     +      +  +NG      I    D ++                  L
Sbjct: 1093 EMTRISGLSHGTDVWLNNAQDLVRNGTAGFDEIISTRDDIMNALIQ-----------QGL 1141

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                S S  + +R+       E ++  +E        NG+ +    +  ++      Y F
Sbjct: 1142 DKKKSFSIMEKVRKGKPL-SDEILEYMRE--------NGVPEWYIESCLKI-----QYLF 1187

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIKKF--- 805
             K+HA AY ++SY+ A+ K ++P  F A     ++++ +              +K++   
Sbjct: 1188 PKAHAVAYCLMSYRIAYYKVYFPEAFYATYFNTKINDFKYSTIIDGLESIQRALKEYAGN 1247

Query: 806  ----------------CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY---SLAAIKGVG 846
                             ++     I++    +        +  +R  Y    L+A+  V 
Sbjct: 1248 FDLSQRDKQIRTVLEVAEEMAAREIKLEKADIYKSDAKKFLLSDRKGYILPPLSAVDDVS 1307

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQSL 905
               A  I++      F SLED  +R      N+  + SL   G +D     ++M L   +
Sbjct: 1308 EAMAIDIVKEREKGEFISLEDLKTRTSV---NKNAINSLKSLGIIDGIQEKNQMSLFDGM 1364



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L+VH+  + L+G +   +++  +   +  A+ ITDT  L    +  +     GI+ + 
Sbjct: 257 IELEVHTKMTNLDGFVDNKDLVSTLKNWKMGAVGITDTATLQGLPDLYEALSKEGIRMLP 316

Query: 72  GC 73
           G 
Sbjct: 317 GA 318


>gi|218682009|ref|ZP_03529610.1| DNA polymerase III, alpha subunit [Rhizobium etli CIAT 894]
          Length = 564

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 108/461 (23%), Positives = 194/461 (42%), Gaps = 41/461 (8%)

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DN 657
                +    Y ++    TLG+FQ+ES      L  ++P    D++  V++ RPGPI  D 
Sbjct: 6    EHGDEGKPVYAMMGRADTLGVFQIESRAQMSMLPRLKPTVFYDLVIEVAIVRPGPIQGDM 65

Query: 658  IVVYNNRKNGKE---KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +  Y  R+  +     I      ++ +L+ T GV ++QEQ MQIA   +G+  +EAD LR
Sbjct: 66   VHPYLKRREQRARNIPIEYPSKELEAVLERTLGVPLFQEQAMQIAITAAGFKPAEADKLR 125

Query: 715  RAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RAM   K    +   ++RFI G +  G ++  A   F  +  F +YGF +SHAA++A++ 
Sbjct: 126  RAMATFKRTGTIGNFEKRFIEGMASKGYTEEFARQCFNQIKGFGEYGFPESHAASFALLV 185

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831
            Y ++W+K +YP  F AA +  +        +  +DAR+  ++I+P  +N    D  +   
Sbjct: 186  YASSWLKAYYPDVFCAAMLNSQPMGFYAPAQLVRDAREHGVKILPVDINESDWDCDLEAA 245

Query: 832  --------------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                                 + +      IKGV       +++      + S+ D   R
Sbjct: 246  AFDSDAVDFRHREMREIIKARHAVRLGFRQIKGVSDKEMELLVKNRGKG-YGSVRDLWLR 304

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
                 L + V+E L  A A    G SR   L ++  +       +     +   +F   +
Sbjct: 305  ---SGLQKSVIERLADADAFQSLGLSRRDALWAVRAL-------DVKSAAEELPLFEQAR 354

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                      K        +   + R L      HP+   +  L++MGI    + +    
Sbjct: 355  HVDLQAEPATKLPEMLPGEQVIEDYRYLSLSLKAHPVSFLREELQRMGITRNVDLLKVAN 414

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            G  + +A +V+ +Q+  + KG  + ++T  +      A  +
Sbjct: 415  GKRVTIAGLVLVRQRPGSAKG--VIFMTLEDETGVANAIVW 453


>gi|41817819|gb|AAS11667.1| polymerase III subunit alpha [Escherichia coli]
          Length = 300

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 134/301 (44%), Positives = 201/301 (66%), Gaps = 13/301 (4%)

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
           P+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY
Sbjct: 1   PERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPY 60

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
             VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA
Sbjct: 61  GFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHA 119

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +
Sbjct: 120 GGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI 179

Query: 590 AQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            +R        +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+I
Sbjct: 180 NKRRAKNDEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMI 239

Query: 645 ALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQ 697
           ALV+L+RPGP+ + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQ
Sbjct: 240 ALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQ 299

Query: 698 I 698
           I
Sbjct: 300 I 300


>gi|320528407|ref|ZP_08029569.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204]
 gi|320131321|gb|EFW23889.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204]
          Length = 1449

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 164/949 (17%), Positives = 301/949 (31%), Gaps = 231/949 (24%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLD-------------QGKQSVRICLSWLQEIGTEGL 144
             +  +    +G   L +LV+                         R+  S L++   E L
Sbjct: 588  HVCAIAKNHDGLVALYKLVTESNTNTLAVNGKATGKEGTDVAAEPRVVRSTLEKY-RENL 646

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY------------ 192
            ++ +   +G +            E+ +  +        Y+ LQ    Y            
Sbjct: 647  LLGSACLNGEVFELACNGDDARLEEAMKLYD-------YIELQPLGNYSTSIVLGSIPSV 699

Query: 193  DRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH--STVVSQKDRPRV 248
            DR +E Q  ++++A    +P+ AT+++ +   E     DV +       T+     R  V
Sbjct: 700  DRLKEVQKRILRMAQKLNIPVCATSDAHYCIPEQKIFRDVYIMSQGVGGTIHPLYIRDEV 759

Query: 249  ------TPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                   PD +++   EM   F+ L  P+ +E  V       F L      +        
Sbjct: 760  LRLRTKNPDQHIRLTDEMKKEFAWLDDPDLIEEIVVRNPNSIFDLIEE---VRPVPAGTY 816

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              + +  +++LR                 +G   +    RL+ EL+ I R  F  ++ I 
Sbjct: 817  PPVIEGSDDKLRKICHDTAMRMYGF----EGKVPEIVTDRLNSELDNIIRNGFGVHYYIA 872

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S TA    IT+++PLR                     
Sbjct: 873  HLLVKKSNDDGYVVG-SRGSVGSSFTATMSGITEVNPLRPHYLCPKCHYSEFFDDPSIAS 931

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                 ++ F+ FL  +    PD D++F  + +     ++++ +G
Sbjct: 932  GFDLPDKVCPHCGETMRGNGHNIPFQTFLGFNADKTPDIDLNFSNEYQWRAHAFIKDVFG 991

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             +   +  T G++  K A   V       Y +  ++  +      +              
Sbjct: 992  EDHAFRAGTIGTVAEKTAFGYV-----QGYCEKMKISNMRRPMKDY-------------- 1032

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMY---RDVRSDLP 554
                          ++   + + R    H  GI+I           P+     D  S   
Sbjct: 1033 --------------LAHGCQNVKRTTGQHPGGIIIIPHEYEAEDFTPVQYPANDPTSAWK 1078

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT- 613
             T ++   I    ++KFD LG    T ++     L Q+   V    IP +D ET  L + 
Sbjct: 1079 TTHYDFHDIHD-NVLKFDILGHVDPTAMR-----LLQKIATVKPLDIPMNDIETLSLFSC 1132

Query: 614  -------------TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                           G LG+ +  +   R  LE  +P    D++ +  L     +     
Sbjct: 1133 DDALKADTRIYKKETGALGLPEFGTRTTRGVLEETRPKKFSDLVIISGLSHGTDVWAG-- 1190

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAM 717
                 N +E I   H + + +          ++ +M       L S  +    + +R+  
Sbjct: 1191 -----NAQELIRQGHTIDEVIG--------CRDDIMTYLLDHNLESLDAFKIMESVRKG- 1236

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K + E              +  + +      +    K   Y F K+HA AY +++ + A
Sbjct: 1237 -KGLTEAW------------EKSMIEHQVPEWYIESCKKIKYMFPKAHAVAYVMMAMRIA 1283

Query: 778  WMKTHYPVEFLAASMTLEMD-----------------------------------NVEK- 801
            W K H P+ F    +TL  D                                   N EK 
Sbjct: 1284 WYKVHEPLNFYIQYLTLRCDTYEIETMAKGIDVIRTRMNDISTRIAERNPENPVSNKEKS 1343

Query: 802  ---IKKFCQDARQFNIQIMPPSVNTP-CVDFKV---GDNRIYYSLAAIKGVGTTTARHIM 854
               + + C++       I    +      +F++       I      I G+G   A+ I 
Sbjct: 1344 LFDVLEVCEELYARGYNISNVDLYKSLATEFRMSPDNPKTIIPPFTVIDGLGVNVAKSIE 1403

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL 902
            EA     F S ED   R         +L  L   G L+     ++M L 
Sbjct: 1404 EAREKGEFLSKEDILKRTQVSS---SMLVKLAHMGCLEGLQESNQMSLF 1449



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           V L +HS+ S ++G   + +I+  +       IAITD  ++ S ++    A +   +
Sbjct: 301 VELHMHSNLSEMDGVCDIKDIITYVYNLGHRGIAITDHADVQSLVKAYNTAQSLKKK 357


>gi|212696923|ref|ZP_03305051.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676213|gb|EEB35820.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 1010

 Score =  354 bits (908), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 154/896 (17%), Positives = 314/896 (35%), Gaps = 202/896 (22%)

Query: 100 VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
           ++     +G + L +++S   +     ++       L     EGLI+ +GG  G + +A 
Sbjct: 188 IIFAKNYQGLKNLYKIISDSRMKYFNLEAK--TPFDLVRKNKEGLIIGSGGKDGLLFKAI 245

Query: 160 FFNSSQVAEKRLLTFKK--------LFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPL 211
             + S+    ++  F          +F D L     R++        ++++L   H+  +
Sbjct: 246 RDDYSEEKIDKICEFFDFFQIEALGVFADDLENGSIRNKEQIIEINKKIIELGKKHDKLV 305

Query: 212 VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
           VAT +  ++ ++DY   ++L                  P +YLK  +EM+  F  L +  
Sbjct: 306 VATGSVRYMEKKDYVLRNILHKGQFFHYREN------NPLYYLKTTNEMLDEFYYLDDKT 359

Query: 270 ----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
                ++NT++I+ +   ++ +     P  IE       K  ++    KA+         
Sbjct: 360 KMEVVIDNTIKISDQIESVMPIPHETFPPKIEGS----DKRLKDTTYEKAI--------- 406

Query: 326 GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
            +I      +  + RLD EL+ I    ++  ++I  + ++ + ++   VG  RGS   S 
Sbjct: 407 -SIYGDPLPELVKTRLDKELDSIISNGYAVLYIIAKELVEKSNRDGYLVG-SRGSVGSSF 464

Query: 386 TAYALTITDIDPL-----------------------------------------RFSLLF 404
            A    IT+++PL                                            + F
Sbjct: 465 AATMANITEVNPLAPHYICPNCKHSEFITDGSIGAGIDLPDKTCPKCGTEMNKDGHDIPF 524

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           E FL  +    PD D++F  + +  + +Y +  +G  +V +  T G+++   A   + + 
Sbjct: 525 EVFLGFEGDKEPDIDLNFAGEYQPTIHKYTEELFGEGKVFRAGTIGTIKDNTAFGYIKKY 584

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
           +                                  E  L++  + +     + L  + R 
Sbjct: 585 M-------------------------------EDNELTLSNAQIRK---YQRGLFDVKRT 610

Query: 525 ASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
              H  G++I   D+ +    P+     D + D+  T F    +    ++K D LG    
Sbjct: 611 TGQHPGGLMIVPNDKEIYDFSPVQYPADDGKDDIKTTHFTYNMMHGV-ILKLDLLGHDVP 669

Query: 580 TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLES 625
           T+++   D         D   +  DD    ++ ++               GTLGI +  +
Sbjct: 670 TIIRSLQDL-----TNTDPLKLQMDDENVMNIFSSTKPLNIKYDFSNNEIGTLGIPEFGT 724

Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
           S +R  L+   P    ++  +  L       ++ + N +            L+       
Sbjct: 725 SFVRGMLKDTFPTKFSEMTRISGLSHGT---DVWLNNAQ-----------DLVKSKTAGF 770

Query: 686 QGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
             +I  ++ +M     L      S    + +R+      +E +   +E        N + 
Sbjct: 771 DQIISTRDDIMNSLINLGLDKKKSFQIMEKVRKGKEL-SEETLSYMRE--------NKVP 821

Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV--- 799
                +  ++      Y F K+HA AY ++SY+ A+ K +YP  F A   + ++++    
Sbjct: 822 DWYIDSCLKI-----KYLFPKAHAVAYCLMSYRIAYYKVYYPKAFYATYFSTKLNDFQYS 876

Query: 800 -------------------EKIKK----------FCQDARQFNIQIMPPS-VNTPCVDFK 829
                              EK  +            ++    +I+I       +  V F 
Sbjct: 877 VIVKGLKSIQYALNEINQLEKPTQREKNLRSLLEVAEEMAARDIKIKKADLYKSEAVKFI 936

Query: 830 V-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
           +  D  I   L+A+  V    A+ I+E      F S+ED   R    K     L++
Sbjct: 937 LDEDGEILPPLSAVDDVSEAMAKDIVEEREKTKFISIEDLKKRTSLNKNALNSLKN 992


>gi|41817827|gb|AAS11671.1| polymerase III subunit alpha [Shigella flexneri]
          Length = 300

 Score =  353 bits (905), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 132/301 (43%), Positives = 198/301 (65%), Gaps = 13/301 (4%)

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
           P+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR    PY
Sbjct: 1   PERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVRGHPY 60

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
             VDR+ KLIP DP   +  +A   + +  E   AD  V  L+ +++KLEG+ R+A  HA
Sbjct: 61  GFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALINMARKLEGVTRNAGKHA 119

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +
Sbjct: 120 GGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI 179

Query: 590 AQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            +R        +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+I
Sbjct: 180 NKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMI 239

Query: 645 ALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQ 697
           ALV+L+RPGP+ + +   + +RK+G+E+I        H  +  +L+ T G+I+YQEQVMQ
Sbjct: 240 ALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKSVLEPTYGIILYQEQVMQ 299

Query: 698 I 698
           I
Sbjct: 300 I 300


>gi|193216948|ref|YP_002000190.1| DNA polymerase III PolC [Mycoplasma arthritidis 158L3-1]
 gi|193002271|gb|ACF07486.1| DNA polymerase III subunit alpha [Mycoplasma arthritidis 158L3-1]
          Length = 1438

 Score =  352 bits (904), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 147/902 (16%), Positives = 317/902 (35%), Gaps = 171/902 (18%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            + ++    +G ++L +++S+  L D      R+ +   +    E L++ T  ++G +   
Sbjct: 599  VRVIAKNQKGLKKLFKIISKS-LTDDYHGGPRLFIDKWE--HDEDLLLGTSTNAGWVWEE 655

Query: 159  FFFNSSQVAEKRLLTFKKL------FGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212
                + +   K L  +  +        + +Y +        ++    +++ A       +
Sbjct: 656  AMTGTDENILKALAPYDYIEFPPISTFNYIYKDDSITLEQVQFAYKDLLEKAKKLGKLCI 715

Query: 213  ATNNSLFLSEEDYEAHDVLM---AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            A +++ ++ +     + + +    +       +K R   TPD       +M   F  L +
Sbjct: 716  AVSDARYIYDYQSLIYRIYVNAPTLGGGQHWLKKYREIATPDFKYLTTRQMKDEFKFLND 775

Query: 270  -------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
                    ++NT ++A + +  ++V   I  +      DD      N+L+       + R
Sbjct: 776  GTLINEIVVDNTHKLAEQITPKIEV---IKDKLYFPTFDD----SANKLKEVVYQTAKER 828

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                   K         R++ EL  I +  +S  + I    ++ + ++   VG  RGS  
Sbjct: 829  YGNNIDEK------ILSRIEKELGPITKYGYSVIYWISHKLVKRSNQDGYLVG-SRGSVG 881

Query: 383  GSVTAYALTITDIDPLR-----------------------------------------FS 401
             S+ A    IT+++PL+                                           
Sbjct: 882  SSIVANLAGITEVNPLKPHYLCEKCKHFEWSEDPHIFSGWDLPDKKCPKCATIMLKDGHD 941

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL  +   +PD D++F  + +  +  YV+  +G     +  T  ++ +K A    
Sbjct: 942  IPFETFLGFEANKVPDIDLNFSGEYQVTIHNYVKELFGEAHTFRAGTIATIASKTAYGFC 1001

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE-ISQKLEG 520
             +  +  +S                                  +P     L+ ++ K EG
Sbjct: 1002 RKYDEEIHSL-------------------------------HEEPWTRTFLDFLASKTEG 1030

Query: 521  LYRHASTHAAGIVIGDR--PLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + R    H  GI+I  +   +    P+     D+ S    T F+   I    ++K D LG
Sbjct: 1031 VKRTTGQHPGGIIIIPKEFDVEDFTPVNYPANDITSAWKTTHFDFTSIHD-NVLKLDLLG 1089

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
                T+++   D         D   IP  D +   L ++   + I   E S       G+
Sbjct: 1090 HDDPTVIRMLEDLTK-----TDAKKIPKFDEKVMSLFSSTEAIKINPSEISNETTGAYGL 1144

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
                   +  ++   +P   +++++ +   +G +        +    K+ Q  +  ++ +
Sbjct: 1145 PEFGTTFVRRMLKTAKPKSFNDLILMSGLSHGTDVWSGNAEELIKQGKKLQDCVCCRDDI 1204

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M+     +   L   +++ +   +K K   + Q+            SK + +   E L K
Sbjct: 1205 MRDLINWNIDHLEAFEIMEK--VRKGKGLSEYQESLLQ--------SKNVPIWYIESLKK 1254

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------------- 800
               Y F K+HA AY +++++ AW K +YP++F A+  +   D ++               
Sbjct: 1255 I-KYMFPKAHATAYVIMAWRIAWYKFYYPLQFYASFYSTRPDAIDIKVMSDGKDAVDNKL 1313

Query: 801  ----------------------KIKKFCQDARQFNIQIMPPSVNTPC---VDFKVGDNRI 835
                                   I +  Q+      +I    ++          + +  +
Sbjct: 1314 LELKKRSDSKKEPLSTKETNLIPILEITQELYARGFKITNVHISKSKAARWIVDIENKAL 1373

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                  ++G+G T A  I++A  +  F S+EDF  R    K+N ++   L   G LD   
Sbjct: 1374 IPPFVVVEGLGETVADSIIQARNEHEFLSVEDFEKRT---KVNSKIASQLKLLGILDELD 1430

Query: 896  YS 897
             +
Sbjct: 1431 ET 1432



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-IQPI 70
           +   + S+ S  +G  S +  L         AIAITD +++ S  EF         + PI
Sbjct: 317 IEFALRSNMSTQDGISSPSAYLKAAKHFGHRAIAITDLDDVQSFPEFYNATKKDKSVVPI 376

Query: 71  IGCQLDIDMQDN 82
            G  +     DN
Sbjct: 377 YGATISSISSDN 388


>gi|255316456|ref|ZP_05358039.1| DNA polymerase III catalytic subunit, DnaE type [Clostridium
           difficile QCD-76w55]
          Length = 482

 Score =  352 bits (904), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 135/409 (33%), Positives = 221/409 (54%), Gaps = 24/409 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+ YSLL+  + + ++       +    +ITD   ++ A+ F ++  +   +PIIG 
Sbjct: 91  LHGHTEYSLLDSIVRIGDL---AKETEYS-CSITDHGVMYGAINFYKQMVSKNKKPIIGF 146

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           +   +  D     N           +VLL     GY+ + +L S  Y  +   +S +I  
Sbjct: 147 EAYSESIDGSMNKN----------HLVLLAKDEVGYKNISKLCSMAY--NNFYKSPQIKY 194

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
           SWL++   +G+I+L+G  +G I RA    ++++A++  L  K +F D  Y+ +QRH   D
Sbjct: 195 SWLEKY-NKGVIVLSGCIAGEIPRAIADGNNKLAKQIALKLKGIFKDDFYIEIQRHNIKD 253

Query: 194 R-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD- 251
                 Q++ LA   ++ +VAT+++ +L +ED   H+  +     T +    R + + D 
Sbjct: 254 EDKINKQLMLLAKKLDIKVVATDDAHYLKKEDSLVHETHLCNQTKTTMDNPKRFKFSGDG 313

Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
           +Y+    +M   + D+PE L NT+EI  +C         ILP F  ++  ++  EE    
Sbjct: 314 YYVHTCGDMEEKYKDIPEVLFNTLEIMDKCDLHFDFGHNILPVFPREDEKNLNNEE--YF 371

Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
           +     G + R    +    Y + +Y++RL+FE+  I +M +  YFLIV DFI +AKKNN
Sbjct: 372 KKLCEEGFKERFYGSS---KYESVEYKERLEFEVKTICKMGYPDYFLIVWDFINFAKKNN 428

Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
           IP+GPGRGS  GS+ AY L IT++DP+R+ LLFERFLNPDR+SMPD D+
Sbjct: 429 IPIGPGRGSCVGSLVAYVLKITEMDPIRYDLLFERFLNPDRISMPDIDV 477


>gi|293363994|ref|ZP_06610730.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            alligatoris A21JP2]
 gi|292552484|gb|EFF41258.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            alligatoris A21JP2]
          Length = 1432

 Score =  352 bits (904), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 158/915 (17%), Positives = 305/915 (33%), Gaps = 196/915 (21%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            + ++     G ++L +LV++  L ++   S ++ L  L++   + L++ + G +G +   
Sbjct: 595  VSIIAKNQIGLKKLFKLVTKT-LTERFFDSPKLFLEDLEK--DQDLLVGSAGLNGFL-LN 650

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-------VVQLAYTHELPL 211
              F  S +  +  +            N +    Y+ +   Q       ++ LA  H   +
Sbjct: 651  TLFYKSDLVLREYIKLYDYVEIPSISNFKHWIEYEDFTLEQIQDGLRYLINLALEHSKIV 710

Query: 212  VATNNSLFLSEEDYEAHDVLMAV------AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
            +A  +  ++ +    A+D+L+         H     ++     TP+ +     +M+  F 
Sbjct: 711  IAVGDVRYIDKPGKAAYDLLIYAKAIGGDRHYLYEYRRRHNLKTPERFFLTTEQMLEEFE 770

Query: 266  DLPEALEN--TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
             L + L     V+     +  +     I       + DD       +L++        + 
Sbjct: 771  FLGKELAYKIVVQNTNLIADSIDNIEVIKKDLYTPKFDDSH----EKLKDLVYKTAHKKY 826

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
             +         +    R+  E++ I +  +   + I    ++ + +N   VG  RGS   
Sbjct: 827  GE------VLPEIIENRIKKEIDPILKYGYDVIYWISHKLVKKSVENGYLVG-SRGSVGS 879

Query: 384  SVTAYALTITDIDPLRFSL----------------------------------------- 402
            S+ A    IT+++PL                                             
Sbjct: 880  SLVATLSGITEVNPLPPHYICQNCKYFELVESPITTSGFDLDDKNCPKCNSILDKDGQTI 939

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL      +PD D++F  + + ++   V+  +G     +  T  +   K +   + 
Sbjct: 940  PFETFLGFKADKVPDIDLNFSGEYQAQIHNEVKRLFGQNHTFRAGTISTAAYKTSFGYIK 999

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             A       +D   K I ++    ++ Q                           +EG+ 
Sbjct: 1000 NA-------IDENGKHISDNFVDYLTTQ---------------------------IEGVK 1025

Query: 523  RHASTHAAGIVIGDR--PLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H  GI+I  +   +    P+     D  SD   T F+ + I    ++K D LG  
Sbjct: 1026 RTTGQHPGGILIIPKEFDVEDFCPINFPADDTSSDWKTTHFDFRAIHD-NVLKLDLLGHD 1084

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT---------------KGTLGIFQ 622
              T ++                 IP  D +   +  +                G LGI +
Sbjct: 1085 DPTAIRMLEKLTGLNVK----KDIPKKDEKVMSIFKSPKALGIEPSQIGNEQTGALGIPE 1140

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
              +  +R+ LE  +P    D+I+L  L     +          N +  I++    ID ++
Sbjct: 1141 FGTPFVRKMLEQSKPQHFSDLISLSGLSHGTDVWLN-------NAQSLIMNEGLTIDKVI 1193

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGI 741
                 +++Y  Q      + S  +    + +R+  G K  +EEM               +
Sbjct: 1194 SCRDDIMVYLIQ----NGVESLDAFKIMEQVRKGQGIKPDQEEM---------------L 1234

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             K    N +    K   Y F K+HA AY +++++ AW K + P+E+ A   T   D  + 
Sbjct: 1235 KKIGIKNWYIESMKKIKYMFPKAHATAYVLMAWRIAWFKVYKPLEYYATYFTTRCDVFDI 1294

Query: 801  ----------KIKKFCQD----------------------ARQ---FNIQIMPPSVNTPC 825
                      KI     +                      AR+       I   SV+   
Sbjct: 1295 ESMANDVNLAKINNKISEINNKSNNERSVKENNLIPVLEIARELYARGFSISSISVHESL 1354

Query: 826  VDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
             +  +       +  S + + G+G   A  I  A  ++PF S EDF  R    K      
Sbjct: 1355 ENEWIINREKKCLIPSFSTMDGLGINIAETITAARKERPFTSKEDFFKRTSITKTQFNEF 1414

Query: 883  ESLVFAGALDCFGYS 897
            E L   G L     +
Sbjct: 1415 EKLGIFGDLPDSEQN 1429



 Score = 61.9 bits (149), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +     S  + ++G L+   I+ K       A+A+ D+N++    EF   A   GI+PI+
Sbjct: 314 IEFNTKSKMNSMDGILNPAQIIKKAKELNHKAVALLDSNSVQGFPEFYSSALKQGIKPIL 373

Query: 72  GCQLDIDMQDNLKMTN 87
           G       + +  + N
Sbjct: 374 GTTFSAINKSHQAVLN 389


>gi|295091739|emb|CBK77846.1| DNA polymerase III, alpha chain, Gram-positive type [Clostridium cf.
            saccharolyticum K10]
          Length = 1037

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 138/756 (18%), Positives = 244/756 (32%), Gaps = 143/756 (18%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +   + GI+         ++ +  +M+ +     PT   I++L     G   L  L
Sbjct: 353  VKFVEMLKSRGIE------NLDELNEQSRMSVETIRKMPTN-HIIILAKNDVGRINLYRL 405

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL---- 171
            VS   L+    +  RI  S + +   EGLI+ +   +G + +A      +    ++    
Sbjct: 406  VSDSNLV-YYAKRPRIPKSQILKY-REGLIIGSACEAGELYQALLRGVPEAEINKIVSFY 463

Query: 172  --LTFKKLFGDRLYV--NLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDY 225
              L  + L  +   +       +  +  +    ++V+L      P+ AT +  FL  ED 
Sbjct: 464  DYLEIQPLGNNAFMLRDEKSTVKTEEDLKDLNRKIVELGERFNKPVCATCDVHFLDPEDE 523

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIAR 279
                ++MA                   YL+   EM+  F  L         + NT +IA 
Sbjct: 524  VYRRIIMAGKGFKDCDD------QAPLYLRTTEEMLREFEYLGSDKAEEVVITNTRKIAA 577

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
             C  I  V     P  I           +  LRN           +         +   +
Sbjct: 578  MCERISPVRPDKCPPVIP--------NSDEMLRNICYNRAHEMYGEDL------PKIVVE 623

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL+ ELN I    F+  ++I    +  + ++   VG  RGS   S  A    IT+++PL 
Sbjct: 624  RLERELNSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFVATMSGITEVNPLS 682

Query: 400  ---------------------------------------------FSLLFERFLNPDRMS 414
                                                         F + FE FL      
Sbjct: 683  PHYYCTNCHFYDFDSEEVKKFSGMAGCDMPDRLCPVCGKPLKKDGFDIPFETFLGFKGDK 742

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D++F  + +     Y +  +G  +  +  T G+L  K A   V +           
Sbjct: 743  EPDIDLNFSGEYQSRAHDYTEVIFGKGQTFRAGTIGTLADKTAFGYVKKYY--------- 793

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
                                     E R        +  I     G+ R    H  GI++
Sbjct: 794  -------------------------EERGQRKRACEINRIVTGCVGVRRTTGQHPGGIIV 828

Query: 535  GD--RPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
                  +    P+     D+ S    T F+   I+   L+K D LG    T+++   D  
Sbjct: 829  LPHGEEIYSFTPVQHPADDMTSKTITTHFDYHSIDH-NLLKLDILGHDDPTMIRMLQDLT 887

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                V+     IP D  E   L  +   LGI   +  G      G+     +  + ++  
Sbjct: 888  GLDPVR----DIPLDCKEVMSLFQSTEALGITPDDIGGCPLGALGVPEFGTDFAMQMLLD 943

Query: 650  YRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GY 705
             +P    ++V      +G +  + +   LI       Q  I  ++ +M          G 
Sbjct: 944  TKPKYFSDLVRIAGLAHGTDVWLGNAQTLIQEGKATIQTAICTRDDIMVYLISRGLEEGL 1003

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            S +  + +R+  G K     + ++E    G     I
Sbjct: 1004 SFTIMESVRKGKGLKP----EWEEEMTAHGVPDWYI 1035



 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++G   + +I+ +       AIA+TD   +  A   +  A   G    +
Sbjct: 111 VELHCHTKMSDMDGVSEVKDIIKRAKKWGMDAIAVTDHGCV-QAFPDANHAVEKGDGFKV 169

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
              ++  + D+LK   +         + V+      G+
Sbjct: 170 LYGVEGYLVDDLKQLAEDSRGQSLDHTCVVFDIETTGF 207


>gi|256544693|ref|ZP_05472065.1| Gram-positive family DNA polymerase III, alpha subunit [Anaerococcus
            vaginalis ATCC 51170]
 gi|256399582|gb|EEU13187.1| Gram-positive family DNA polymerase III, alpha subunit [Anaerococcus
            vaginalis ATCC 51170]
          Length = 1398

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 155/917 (16%), Positives = 315/917 (34%), Gaps = 206/917 (22%)

Query: 83   LKMTNQGKTPFPTVPS----IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
            L+  N  KT +P         ++      G + L +++S   +     ++       L +
Sbjct: 555  LEKINSIKTKWPLARHENFSSIIFAKNYHGLKNLYKIISESRMKYFNLEAK--TPFDLVK 612

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK--------LFGDRLYVNLQRHR 190
               EGLI+ +GG  G + +A     ++   +++  F          +F D L     R +
Sbjct: 613  ENKEGLIIGSGGKDGLLFKAIRDGYAEEKIEKICGFFDFFQIEAMGVFADDLENGAIRDK 672

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                    ++++L   +   +VAT +  ++ ++DY   ++L                  P
Sbjct: 673  NQIIEINKKIIELGKKYNKLVVATGSVRYMEKKDYVLRNILHKGQFFHYKEN------NP 726

Query: 251  DHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             +YLK  +EM+  F  L +       ++NT++IA      L+   PI       + +   
Sbjct: 727  LYYLKTTNEMLDEFYYLDDQTKMEVVIDNTIKIAD----SLERIMPIPHETFPPKIEGSD 782

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K+ ++    KA+          +I         + RLD EL+ I    ++  ++I  + +
Sbjct: 783  KKLKDTTYEKAI----------SIYGDPLPDLVKTRLDKELDSIISNGYAVLYIIAKELV 832

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL-------------------------- 398
            + + ++   VG  RGS   S  A    IT+++PL                          
Sbjct: 833  EKSNEDGYLVG-SRGSVGSSFAATMANITEVNPLAPHYVCPSCKHSEFITDGSVGAGIDL 891

Query: 399  ---------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                              + FE FL  +    PD D++F  + +  + +Y +  +G  +V
Sbjct: 892  PDKTCPKCGADMNKDGHDIPFEVFLGFEGDKEPDIDLNFAGEYQPTIHKYTEELFGEGKV 951

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
             +  T G+++   A   + + +                                  +  L
Sbjct: 952  FRAGTIGTIKDNTAFGYIKKYM-------------------------------EDNDLNL 980

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMY---RDVRSDLPVTQF 558
            ++  + +     + L  + R    H  G++I      +    P+     D + D+  T F
Sbjct: 981  SNAQIRK---YQRGLFDVKRTTGQHPGGLMIVPNDKNIYDFSPVQYPADDGKDDIKTTHF 1037

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK--- 615
                +    ++K D LG    T+++   D         D   +  DD    ++ ++    
Sbjct: 1038 TYNMMHGV-ILKLDLLGHDVPTIIRSLQDL-----TNTDPLKLQMDDENVMNIFSSTKPL 1091

Query: 616  -----------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
                       GTLGI +  +S +R  L+   P    ++  +  L       ++ + N +
Sbjct: 1092 NIKYDFSNNEIGTLGIPEFGTSFVRGMLKDTFPTKFSEMTRISGLSHGT---DVWLNNAQ 1148

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKI 721
                        L+         +I  ++ +M     L      S    + +R+      
Sbjct: 1149 -----------DLVKSKTAGFDQIISTRDDIMNSLINLGLDKKKSFQIMEKVRKGKTL-S 1196

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +E +   KE        N +      +  ++      Y F K+HA AY ++SY+ A+ K 
Sbjct: 1197 EETLAYMKE--------NNVPDWYIDSCLKI-----KYLFPKAHAVAYCLMSYRIAYYKV 1243

Query: 782  HYPVEFLAASMTLEMDNV----------------------EKIKK----------FCQDA 809
            +YP  F A   + ++++                       EK  +            ++ 
Sbjct: 1244 YYPKAFYATYFSTKLNDFQYSVIVNGLKSIQYALNEINQLEKPTQREKNLRSLLEVAEEM 1303

Query: 810  RQFNIQIMPPS-VNTPCVDFKVGDNRIYY-SLAAIKGVGTTTARHIMEASADKPFDSLED 867
               +I+I       +  V F + D+      L+A+  V    A+ I+       F S+ED
Sbjct: 1304 AARDIKIKKADLYKSEAVKFILDDDGEILPPLSAVDDVSEAMAKDIVIEREKAKFISIED 1363

Query: 868  FCSRVDSKKLNRRVLES 884
               R    K     L++
Sbjct: 1364 LKKRTSLNKNALNSLKN 1380



 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L++H+  + L+G + ++ +  K+ A    +  ITDT  L +  +   K     I+ + 
Sbjct: 292 VELEIHTKMTNLDGFVDMDELAKKLKAWGHSSCGITDTETLQALPDMYDKLGKNDIKMLA 351

Query: 72  GC 73
           G 
Sbjct: 352 GA 353


>gi|282600891|ref|ZP_06257782.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM
            15176]
 gi|282571272|gb|EFB76807.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM
            15176]
          Length = 1347

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 160/907 (17%), Positives = 298/907 (32%), Gaps = 168/907 (18%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                +++LV    G + L  +VS  +      +  R+  S L +   EGL++     +G 
Sbjct: 512  KYYHLIILVQNQVGLKNLYRIVSAAHT-QYFFKKPRVPRSLLNKY-REGLLLSPACEAGE 569

Query: 155  IDRAFFFNSSQVAEKRLLTF------KKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYT 206
            + RA           R+  +      + L  +   V   +    +  +     V++L   
Sbjct: 570  LYRAIVAGQPYEQLLRIADYYDYLEVQPLGNNEFMVRNGQVDSIEAIKNFNRTVIKLGED 629

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
               P+VAT +S F   ED+    VL A         +              +EM+  FS 
Sbjct: 630  LHKPVVATGDSHFQEPEDWIYRAVLQAGNGFKDADNQAPLYY------HTTTEMLEDFSY 683

Query: 267  LPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
            LP+  A E  V    + +  +  +   +P+             E ELR+           
Sbjct: 684  LPQDKAFEIVVTNPNKIAATIDNNLRAIPKGTYPPSIPG---AEQELRDDTWKHAARDYG 740

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                         ++RL  EL+ I    ++  ++I    + ++      VG  RGS   S
Sbjct: 741  T------PLPDVLQKRLKKELDSICGHGYAVLYVIAVRLVAYSNAGGYQVG-SRGSVGSS 793

Query: 385  VTAYALTITDIDPLR-----------------------------------------FSLL 403
              A+   I++++ +                                            + 
Sbjct: 794  AVAHFSGISEVNSMPPHYLCPECKHSEWIDDGIHMDGFDLPDKNCPVCGHKMIVEGHDIP 853

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL       PD D++F    +  V RY +  +G E V +  T   LQ K A   V +
Sbjct: 854  FETFLGFYGDKEPDIDLNFSGMYQSHVHRYTEELFGKENVFKAGTVSGLQDKTAYGYVKK 913

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             L+     V+R                  A+++R                      G+ R
Sbjct: 914  YLEERGKTVNR------------------AEENRL----------------VIGCTGVKR 939

Query: 524  HASTHAAGIVIGDR--PLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                H  G+V+      +     +     DV+  L  T F  K++    L+K D LG   
Sbjct: 940  TTGQHPGGMVVVPDTFDIYDFCAIQHPADDVKGGLLTTHFEFKYLHDT-LLKLDELGHDV 998

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
             T  +   ++       + +  +P +D + Y LLT+   LG+ + E  G +    G+   
Sbjct: 999  PTFYKYFEEY-----SGIPIDSVPMNDEKVYSLLTSPEALGVTE-EQIGSKTGTFGIPEM 1052

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQ 697
                +  ++   +P     ++  +   +G +   +    LI         VI  ++ +M 
Sbjct: 1053 GTNFVRQMLLDAQPKNFSELIQISGLSHGTDVWTNNADELIRSGTCTIAEVIGCRDSIML 1112

Query: 698  I---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
                  L    +    + +R+    K           F  G  +      +     E   
Sbjct: 1113 YLLRKGLEPKMAFDIMEAVRKGKVAK---------GGFQPGWEEAMREHDVPDWYIESCR 1163

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------KIKK-- 804
            K   Y F K+HA AY + + +  W K ++P  F A   T+   +++        ++ K  
Sbjct: 1164 KI-KYMFPKAHAVAYLMAAIRLMWFKVYHPAIFYAVYFTVRGADIDYEAAVGGVRVAKEH 1222

Query: 805  ------------------------FCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSL 839
                                       +  Q   Q +P  +  +    + V D ++    
Sbjct: 1223 LRDNERIPKEERTAKDDDALVSLQLENEMLQRGCQFLPIELGKSHASKYVVEDGKVRLPF 1282

Query: 840  AAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             +++G+G   A  + EA+     + S+E+      +  +   V + L   GAL     + 
Sbjct: 1283 TSLRGLGEAAAVALEEATIHGQEYISIEELQQ---ASGVASSVFDKLRSVGALGNLPETS 1339

Query: 899  MQLLQSL 905
               L SL
Sbjct: 1340 QVDLFSL 1346



 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 18/47 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
           V L +H+  S ++G      I+         AIAITD        E 
Sbjct: 231 VELHLHTKSSSMDGFNDPGKIVRLAHRMGHRAIAITDHGVCQGYPEA 277


>gi|289450465|ref|YP_003475243.1| DNA polymerase III subunit alpha, Gram-positive type [Clostridiales
            genomosp. BVAB3 str. UPII9-5]
 gi|289185012|gb|ADC91437.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridiales
            genomosp. BVAB3 str. UPII9-5]
          Length = 1495

 Score =  350 bits (899), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 156/931 (16%), Positives = 298/931 (32%), Gaps = 209/931 (22%)

Query: 80   QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI 139
            +  L    +          I+ LV    G   L  LVS  +      +  RI    L   
Sbjct: 629  RSGLLRPEEITDKEHKPNHIIFLVRNLLGLYNLYRLVSISHT-QYFHKRPRIPKHLLT-Y 686

Query: 140  GTEGLIMLTGGSSGPIDRAFFF--------------NSSQVAEKRLLTFKKLFG-----D 180
               G+I+     +G + R                    +  A K+L  +          +
Sbjct: 687  FRHGIIVGAACEAGEVFRHVRNLYESNGCDFELTKGKLNTPASKKLARYYDYLEIQPLTN 746

Query: 181  RLYVNLQRHRGYDRYRESQV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
             L++  ++    +      +    + LA   ++ +VAT +S FL++ED     +L+    
Sbjct: 747  NLFLTRRQQNPLNDKDLINLNLLVIHLAELTKMRVVATCDSHFLNKEDGIFRHILLTNIG 806

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPR 294
              V  +       P+ Y +N  EM++ F+ L   +A E  V   R   +   +  P +  
Sbjct: 807  YDVNER------QPELYFRNTDEMLAEFTYLSPDKAKEFCVTNPR---YFASLVEPNIRP 857

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            F +     +    + ++          R ++    +G   +   +R++ ELN I +  F+
Sbjct: 858  FPDGTFPPLIASADKDIETMTY----RRASELYEYQGKLPEIVSKRIEKELNSIIKNGFA 913

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------------- 398
              + I    ++ +  +   VG  RGS   S  A    IT+++PL                
Sbjct: 914  IMYYIAHKLVKKSNDDGYIVG-SRGSVGSSFVATLCGITEVNPLCPHYRCPHCRYSRFDE 972

Query: 399  -------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
                                        + FE FL  +    PD D++F    +    +Y
Sbjct: 973  SGKFGSGFDLPPEKCPDCGEMMIRDGQDIPFETFLGFNGDKQPDIDLNFSGVYQPHAHKY 1032

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            +Q  +G     +  T G    K AL  V + L+     ++R  +                
Sbjct: 1033 IQEMFGIAHTYRAGTIGCFAEKNALGMVRKYLEDTGEVINRAGQQ--------------- 1077

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVR- 550
                                ++  ++G+ R    H  GIV+    R +    P+      
Sbjct: 1078 -------------------RLAAGMDGVKRTTGQHPGGIVVIPKEREVFDFTPIQYPADK 1118

Query: 551  --SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
              S +  T F+   +    ++K D LG    T+L+   D    +        IP  D + 
Sbjct: 1119 LDSVMTTTHFDFNSLHDT-ILKLDILGHDDPTMLKVLSDMTKIKVT-----DIPIPDEKV 1172

Query: 609  YHLLTTKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              +  +                TLG+ ++ +   R  ++  +P    D++ L+ L     
Sbjct: 1173 MRMFVSTEPLGIPDGTSPADSATLGLPEMGTFMARGMIKETKPSRFYDLVQLMGLSHGTD 1232

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---QIAQLLSGYSLSEAD 711
            +                 +   LI   +     VI  ++ +M       L +  S    +
Sbjct: 1233 VWKG--------------NAQDLIHQGICTINEVIGCRDGIMTRLIYYGLPAKSSFDIME 1278

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +R+   K + EE +              + +    + +    K   Y F K+HAAAYA+
Sbjct: 1279 KVRKG--KGLSEEHEAL------------MREHNVPDWYIDSCKKIKYMFPKAHAAAYAI 1324

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEK------------------------------ 801
             + + AW K +YP  + +A  T+  D  +                               
Sbjct: 1325 SALRIAWFKVYYPEAYYSAYFTVRADEFDSDILCVDANTLQNNKRSLRLAFSQNDGKEKD 1384

Query: 802  -----IKKFCQDARQFNIQIMPPSVNTPC-VDF-KVGDNRIYYSLAAIKGVGTTTARHIM 854
                 I +  ++     I+ +P  +     V+F   G   +   L A+  + +  A  I 
Sbjct: 1385 KNLYYIAEIVEEMNLRGIKFLPIDIYDSDPVNFLPEGKGFVRPPLNALPSISSAIAMSIA 1444

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                   F +  +   R    +    VL   
Sbjct: 1445 AERDKGLFKNQSELMQRAKIGETALGVLRDH 1475



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 18/43 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           V L  H+  S  +   +  +++   A     A+A+TD   +  
Sbjct: 342 VELHCHTKMSAKDAVSNPADVVKLAAQFGHEAVAVTDHGVVQG 384


>gi|269115238|ref|YP_003303001.1| DNA polymerase III polC-type [Mycoplasma hominis]
 gi|268322863|emb|CAX37598.1| DNA polymerase III polC-type [Mycoplasma hominis ATCC 23114]
          Length = 1437

 Score =  350 bits (898), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 148/900 (16%), Positives = 302/900 (33%), Gaps = 178/900 (19%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +LV    G ++L +++SR  L  Q K++ +I    L     E L   +  +   +    
Sbjct: 602  RILVKNQAGLKKLFKIISRS-LTSQFKKNPQIYFDQL--GNDEDLFFGSATNQSYVWDQV 658

Query: 160  FFNSSQVAEKRLLTFKKLFGDRL----YVNLQRHRGYDRYRE--SQVVQLAYTHELPLVA 213
            F  +++     L  +  +    +    Y+    H   D  +     ++  A +     VA
Sbjct: 659  FTGTNENLLNSLKYYDYIELPPISSFQYMIDSNHVTLDELKFLYKDLISKAKSLNKMCVA 718

Query: 214  TNNSLFLSEEDYEAHDV-LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--- 269
             ++  ++       H++ + A      +    +    P+       EM+  F+ L +   
Sbjct: 719  VSDCRYIYNYQRLIHEIYIEAPTLGGGLHWLKKRPSHPEFRYLTTREMLKEFAFLNDSYL 778

Query: 270  ----ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
                 +EN  +IA   S  +QV   I  +      D+       +LR      L+ R   
Sbjct: 779  INEIVIENPNKIANEISSNIQV---IKDKLYVPTFDN----SPQKLREVVYRTLKERYGD 831

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                         +R++ ELN I +  +S  + I    ++ + ++   VG  RGS   S+
Sbjct: 832  NPDP------IIVKRIEKELNPIIKYGYSVIYWISHKLVKKSNEDGYLVG-SRGSVGSSI 884

Query: 386  TAYALTITDIDPLR-----------------------------------------FSLLF 404
             A    I++++PL                                           ++ F
Sbjct: 885  VANLAGISEVNPLPPHYLCKNCKYFEWNSNKEIYSGWDLPDKHCPNCNSILSKDGHNIPF 944

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  +   +PD D++F  + +  +  YV+  +G     +  T  ++  K A     + 
Sbjct: 945  ETFLGFEADKVPDIDLNFSGEYQPTIHNYVKELFGEAHTYRAGTIATVAEKTAYGFCKKY 1004

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
             +           L  +                                ++ K +G+ R 
Sbjct: 1005 EEEKRGNYQPWSHLFLDF-------------------------------LASKTQGVKRT 1033

Query: 525  ASTHAAGIVIGDR--PLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GI+I  +   +    P+     D  S    T F+   I    ++K D LG    
Sbjct: 1034 TGQHPGGIIIIPKEFDVEDFTPVNYPANDTESSWKTTHFDFTSIHD-NVLKLDLLGHDDP 1092

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            T+++                 IP  D E   L  T  +L I   +  G      G+    
Sbjct: 1093 TVIRMLETLTNTNAK-----EIPKFDAEVMKLFYTTESLKISPSDIGGETTGAYGLPEFG 1147

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
               +  ++   +P   +++++ +   +G +        +    K+    +  ++ +M+  
Sbjct: 1148 TNFVRKMLKKAQPRSFNDLILLSGLSHGTDVWTDNAEELVARGKKLIECVCCRDDIMRGL 1207

Query: 700  QL-----LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
                   L+ + + E     + +  + +E +             + + +    ++ ++  
Sbjct: 1208 IEWNIEPLTAFQIMEKVRKGKGLTPEWEELL-----------KSHNVPEWYIESLQKI-- 1254

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------- 800
                Y F K+HA AY +++++ AW K +YP+ F A+  T   D ++              
Sbjct: 1255 ---KYMFPKAHATAYVIMAWRIAWYKLYYPLPFYASFYTNRPDAIDIQIMSSGAASVHQK 1311

Query: 801  -----------------------KIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR 834
                                    + +  Q+      +I    +     D  +    D  
Sbjct: 1312 LIELKNRQNSTGEKLSVKEEALIPVLEITQELYARGFKIKNVDLKLSLADKWIIDEKDKA 1371

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +      + G+G T A+ I+ A  +  F S+ED  SR    K+N R++  L   G LDC 
Sbjct: 1372 LIPPFNVVDGLGITVAQTIVSARKEGFFLSIEDLASRT---KVNSRIISELKKIGVLDCL 1428



 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-AGIQPI 70
           V L   S+ S  +G  + ++ +D        AIA+TD +++    EF   A     ++PI
Sbjct: 320 VELAARSNMSAQDGISTPSDYIDAAKFYGHKAIALTDLDDVQGFPEFYNYAKKQKDVKPI 379

Query: 71  IGC 73
            G 
Sbjct: 380 YGA 382


>gi|162447117|ref|YP_001620249.1| DNA polymerase III subunit alpha [Acholeplasma laidlawii PG-8A]
 gi|161985224|gb|ABX80873.1| DNA polymerase III alpha subunit [Acholeplasma laidlawii PG-8A]
          Length = 1504

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 160/958 (16%), Positives = 316/958 (32%), Gaps = 201/958 (20%)

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
                  ++Q +L M    + P P   +++    T EGY+ L +LVS   L        R+
Sbjct: 599  EIYSYFELQASLDMNEVWRHPIPKYATVL--AQTQEGYKNLFKLVSDA-LTTHFDGGPRL 655

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQR- 188
              S   +   EGL++ +G     +  A    + +  ++ +  +  +       Y++L++ 
Sbjct: 656  LKSAFLKY-REGLLIGSGTEHSEVFEAALNLNDEQLKEAISFYDYIEVQPLNAYLHLEKE 714

Query: 189  ----HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQK 243
                 R   +    +++  A      ++A++N+ +L+ ED +  ++ +        +   
Sbjct: 715  IGALGREVIQAAIKKIITYAKEQNKIVIASSNAHYLNPEDKKYREIYIQTKSVGGGLHPL 774

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQ----VHAPILPRFIE 297
                 +PD +L   +EM+  FS L +  A E  V    + S + +        +      
Sbjct: 775  ANYETSPDQHLLTTTEMLDAFSFLDQQTAYEIVVTNTNKLSDMFENVRAFPKELYSIKDH 834

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               D +      E   + V     RL    I           R+  EL  I   +F+  +
Sbjct: 835  AFKDTLGIPSIKEHVEEMVMNEAKRLYGDPIH-----PYVLGRVQRELTNIIDNQFAPIY 889

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN-------- 409
             I    ++ +  +   VG  RGS   S+ A  + IT+++PLR     ++           
Sbjct: 890  FISHLLVKKSLDDGYLVG-SRGSVGSSLVATLMNITEVNPLRPHFRCKKGEYAVFKLTDE 948

Query: 410  ---------------------PDRMSMPDFDIDFCQD----------------------- 425
                                      +PD     C +                       
Sbjct: 949  EIYEQGVDARDEPFIEVLKHVKSGYDLPDMKCPICGELMHKDGHDIPFETFLGFDGDKIP 1008

Query: 426  ---------RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
                      + +   YV+   G E   +  T  ++  + A   V          ++ L 
Sbjct: 1009 DIDLNFSGDYQSKAHDYVRELLGEEYTFRAGTIQTVAERNAFGYVK-------GYLEYLG 1061

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            K                           D     +  +++ +EG+ R    H  GIV+  
Sbjct: 1062 K---------------------------DARSAYIERLAKGIEGVKRSTGQHPGGIVVVP 1094

Query: 537  RP--LSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +   +  + P+     DV S    T F+    E   L+K D LG    T+++  +D++ +
Sbjct: 1095 KDKSIYDVTPIQYPADDVNSAWKTTHFDYHAFED-NLLKLDILGHDDPTMIKFLMDYVKE 1153

Query: 592  RGVKVDLS---LIPFDDHETYHLLTTKGTLG---------------IFQLESSGMRQALE 633
                        IP DD   Y L      +G               I +  +   RQ L+
Sbjct: 1154 HPEDFPFDNAQDIPLDDPNVYRLFQDTSVIGLKDKDDVYGDIASYAIPEFGTPFTRQMLQ 1213

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +P     ++ +  L               KN +E ++               +I  ++
Sbjct: 1214 QTRPSTFAGLVKISGLSHGTD-------VWLKNSQELVL---GSTQFGKISFDDIIGCRD 1263

Query: 694  QVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
             +M       +    +    + +R+       ++  +          +N +  +   + +
Sbjct: 1264 DIMVELSDRGMKEAKAFEIMEFVRKGKPSSNPKKWAEY---------ENEMKASKIPDWY 1314

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------K 801
               A    Y F K+HA AY +++ + AW K + P+ F ++  +      E          
Sbjct: 1315 IWSASQIKYMFPKAHATAYVIMAMRIAWFKVYSPLLFYSSFFSKRAVQFEHDIMVAGTNA 1374

Query: 802  IKKFCQ-----------------------DARQFNIQIMPPSVNTP-CVDFKVGDNRIYY 837
            I+                           +  +   + +P ++      +F +  N +  
Sbjct: 1375 IRNRINTLRNDNNITAKDQDVIVTLLVALEMTKRGFKFLPVNIKKSHAKEFVMEKNGLRM 1434

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              ++I G+G   A +I+E   +KP++S ED   R    KLN+ V E L  AGA D   
Sbjct: 1435 PFSSIDGLGLQAAINIVENREEKPYNSKEDARVR---GKLNKTVFERLDLAGAFDDLA 1489



 Score = 69.6 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 35/81 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+  S ++   S+ + ++ + +    A AITD N L++  E  +      I+PI 
Sbjct: 324 VEFHIHTKASPMDAVTSITDYVETLESWGHKAFAITDRNGLYAYPELHKAIKGKKIKPIY 383

Query: 72  GCQLDIDMQDNLKMTNQGKTP 92
           G QLD    +   +       
Sbjct: 384 GVQLDYVDDEAFWVAKDYHED 404


>gi|307297423|ref|ZP_07577229.1| DNA-directed DNA polymerase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916683|gb|EFN47065.1| DNA-directed DNA polymerase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 898

 Score =  349 bits (895), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 187/645 (28%), Positives = 299/645 (46%), Gaps = 59/645 (9%)

Query: 323 LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
           L   A+ +     +Y  RL  EL+VI       YF+ V+  +  AK     +GPGRGS  
Sbjct: 184 LLGKALEEKKMGDEYLSRLKRELSVILAKNIQDYFMTVSKIVDIAKSIGCWIGPGRGSAV 243

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
           GS+ +Y L IT IDP+   L FERFL+  R   PD D+D     R  +++ +   +G++R
Sbjct: 244 GSLVSYLLEITRIDPVAEDLFFERFLSLKRADPPDIDLDVDDKSRPVLLKKMYEYFGNDR 303

Query: 443 VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
              I T  +   K A R++G+ L +     D++ KLI              D  RF  A 
Sbjct: 304 FCLIRTHSTYGFKGAARELGKKLGISK---DKISKLIEWS----------KDGKRFPYAF 350

Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
             D  + RL ++S+ + GL+   S HAAG+++    L  L+P+  D   DLPV+ ++M  
Sbjct: 351 EEDLDMKRLFDMSKLIAGLFSGYSLHAAGVILSGISLKGLIPV--DFSEDLPVSLWDMDS 408

Query: 563 IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
           +   GL K D LGLK L+LL++            +    P  D  TY  L +  T GIFQ
Sbjct: 409 LRIVGLQKIDILGLKNLSLLREM-------TQGKEPWDNPACDSNTYETLGSGYTTGIFQ 461

Query: 623 LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDP 680
           LE+    + +  ++P  + D+   ++L RPGPI + V   +        +I  +   + P
Sbjct: 462 LEAPYATKIIRSVKPSSLRDLSICIALNRPGPIKSGVTERFLKLSRVPSEIEKMRKRV-P 520

Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
           +L ET G ++YQEQV++IA  L      + ++LRRA+ KK ++ +D+    F S    + 
Sbjct: 521 VLAETAGFLVYQEQVLKIASSLLSLEADDGELLRRALSKKDRDAVDRL---FQSSPGYSR 577

Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
           +       ++  L  FA Y FNKSH+ +YAVIS+  A+ K+++P E     M  E+    
Sbjct: 578 LPDERRAKLYSFLLDFAGYAFNKSHSLSYAVISFWLAYFKSNHP-EIFYPLMLRELPRT- 635

Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
              +   + R   +++   S+     D K+       S+  +   G             K
Sbjct: 636 SFGRLVAEIRDRGLKL---SIENGVEDRKIVS----LSIPQLLNKGE---------LKPK 679

Query: 861 PF-DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
           PF DS   F  R +  K   R LE L+ +G LDC+G SR  LL+ +++         K+ 
Sbjct: 680 PFEDSFFTFV-RNNRSKYQARDLEKLIKSGYLDCYG-SRNDLLKKMNDALTGVNPELKSI 737

Query: 920 TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
                ++F +++     +        +    R   E   LGF  +
Sbjct: 738 R----SVFGYKEELQEAR------EEDTPVERAMMEIETLGFNVT 772


>gi|154249666|ref|YP_001410491.1| DNA-directed DNA polymerase [Fervidobacterium nodosum Rt17-B1]
 gi|154153602|gb|ABS60834.1| DNA-directed DNA polymerase [Fervidobacterium nodosum Rt17-B1]
          Length = 853

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 175/636 (27%), Positives = 292/636 (45%), Gaps = 92/636 (14%)

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
             ++Y++RL+ E+ ++   KF  YF  V   ++ AK +NI VG GRGS  GS+ AY L I
Sbjct: 193 QEKEYKERLEREIRLVKSFKFEDYFYTVKRIVEIAKAHNIEVGYGRGSAVGSLLAYRLGI 252

Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
           T IDP++++LLFERFLN  R   PD D+D    RR E+I+ +++++G   V  I TF   
Sbjct: 253 TKIDPVKYNLLFERFLNEGRTDYPDIDLDIEDVRRQELIKLLKSEFG--YVYNISTFV-- 308

Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
                         +P   +D +                              P      
Sbjct: 309 -------------GIPKKFLDSI------------------------------PE----- 320

Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
           E + +L  +    STHAAG++I   PL+  VPM     S +   +++M  ++  G IKFD
Sbjct: 321 EYANELSNIPIQRSTHAAGVIISTTPLN--VPMIH-SESGIDTIEWDMDDLQYLGYIKFD 377

Query: 573 FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGLKTL++ ++  D ++Q   +            TY  ++   T  +FQLESS  +  +
Sbjct: 378 LLGLKTLSIYKELRDTISQSFKEEKEEFK----KNTYRYISVGFTDNVFQLESSIGKSVV 433

Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
             ++P  I ++   +SL RPGP+ + +    R     KI  +      +L ET G+ IYQ
Sbjct: 434 RDVKPSNISELAITISLNRPGPLRSGITGEIR---NLKIKKLKKYNLEILDETYGLPIYQ 490

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQ+M+IA  L+G+S ++AD+LR+A+ KK  + + +  ER  +        + +   + + 
Sbjct: 491 EQIMKIAMELAGFSSTQADILRKAIAKKDIDSIRQLYERLKNALFGKLGKEGL--ELAKN 548

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA--- 809
           +  F +Y FNKSHA AY+ ++Y  A+ K ++P  F    +  +           QDA   
Sbjct: 549 ILAFGEYAFNKSHAIAYSHLTYYMAYFKVNFPDIFYDTYLKYDTS-------ILQDALYN 601

Query: 810 -RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
            +  N +++PP + +        +   +  L  + G+    ++ +        F S EDF
Sbjct: 602 LQTLNYKVLPPKLFSNLKTMNKDEKIYHLPLHILPGISVEKSKQLQTME----FKSFEDF 657

Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             + D       V+E+L+  GA D    SR + +Q L N++       +        +F 
Sbjct: 658 VEKADL---PLSVIEALIKVGAFDDIFESRRKAIQKLRNLR---NKFNQEAVKIGNKLFG 711

Query: 929 HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
                    + +++  VE    R   E  +LG   S
Sbjct: 712 KI-------VKVDETKVEEDWERTNMEYDILGIAVS 740


>gi|219883037|ref|YP_002478201.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6]
 gi|219862043|gb|ACL42384.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6]
          Length = 752

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 195/820 (23%), Positives = 331/820 (40%), Gaps = 120/820 (14%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +FVHL  HS YS  +   ++  ++   AAD Q A+A+TDT NL +A     +A   GI+P
Sbjct: 3   TFVHLNGHSEYSS-DSNATIKELVAAAAADGQGALALTDT-NLAAAPLLRAEARRHGIKP 60

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIG        D   + N+  T    V  + LL     G+  L+ L +   +   G+   
Sbjct: 61  IIGL-------DVRLVENRHSTDHQQVFHLTLLAENRTGWHNLVALYNSSAV--PGRSQS 111

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQR 188
            +    L  +  +GLI LTGG  GP++     N +  A       +  L   R+++    
Sbjct: 112 FVDHELLA-LHADGLIALTGGRRGPVEAFLDLNDADTARANFARLESTLGTGRVFLEA-- 168

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +  +    V +     + +VAT      + ED EA   LM +        K+    
Sbjct: 169 -SSPESAQLLTGVFMGRA--VHVVATGRYRQTALEDTEARQTLMDIRAG-----KEGRGY 220

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP--RFIEKECDDIQKE 306
               +L+  SEM     D  +A +N V IA      +   A   P          D  + 
Sbjct: 221 GEGGWLRTESEMRRQAPD-SQAWQNAVTIAATVGDAIHYDAIPEPGGNMPSFAVPDGFQS 279

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               LR+    G   R  + +        +  +RL+ EL VI     +   LI  D I+W
Sbjct: 280 SGEYLRHLTFRGAGSRFDEISF-------EAIERLNNELEVIISKGAADSILITHDLIKW 332

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
              N+I  G  RG+ + S+  Y L ITDI+PL + L +ERFL P R  +P  DID    R
Sbjct: 333 CTDNDILTG-ARGNSSSSLVLYCLGITDINPLTYGLRYERFLRPGRTEIPGLDIDIQASR 391

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
             +   Y+  ++  +RVA+  T   ++A                                
Sbjct: 392 MQDAHGYLSKRWP-DRVARAATHSRVKA------------------------------DT 420

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            + + +  + +                 +  ++G + + + H   +VI  R L+  +P+ 
Sbjct: 421 WTRRGLVSEEK-----------------AALVDGRFLNRNIHPCAVVIAARDLTDQLPVL 463

Query: 547 RDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDLS 599
            D R+     LPV  +  + +   G +  + LG  TL ++ ++           V + L 
Sbjct: 464 PDRRAGHEHELPVANWEAQTLLNEGYLVLNLLGSATLDVVAQAAALARLDRGSPVHLGLL 523

Query: 600 LIPFDD------HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
           L   DD         + L+T   T G+F L +     A +  +P  + D+  L +L   G
Sbjct: 524 LPVGDDLYARSTPAAWDLITAGDTDGVFGLGAEEAVAAAKLARPRNLTDMAVLTALS--G 581

Query: 654 PIDNIVVYNNRKNGKEKIVSIHPL-----------IDPMLKETQGVIIYQEQVMQIAQLL 702
             +    Y   +  + ++   H             +  +L  T G +++QEQVM +   +
Sbjct: 582 KEERRNRYLTARINRPRLRYYHLEHLTSEESEQAYLCRILAPTHGELVFQEQVMDLFSTV 641

Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-----------NGISKTIAVNIFE 751
            G+S  +A+   R + KK ++     +E+F++GA +              S   A  +F+
Sbjct: 642 GGFSDVDAEGAWRFLAKKPRD-WSGLREKFLAGAVQEKRGRAGDPYSMVFSAGTAEQVFD 700

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
           L+ +   + F+ SHA AYAV ++QTAW++ H+P  F    
Sbjct: 701 LIMEAVPFLFSASHAHAYAVRTFQTAWLRAHFPEAFQRVL 740


>gi|253682892|ref|ZP_04863680.1| DNA Polymerase III alpha chain [Clostridium phage D-1873]
 gi|253560906|gb|EES90367.1| DNA Polymerase III alpha chain [Clostridium phage D-1873]
          Length = 810

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 146/848 (17%), Positives = 333/848 (39%), Gaps = 89/848 (10%)

Query: 15  QVHSSYSLL---EGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQP 69
             H+ YS L   +      + + +           T+    +    LE         ++ 
Sbjct: 7   HKHTHYSNLRTIDVITKPIDYIKRAKELGHNTYFTTEHG--WGGNVLEAYTLCKENNLKM 64

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I G +    + + L+              I+L+    +G++ +  ++S   L        
Sbjct: 65  IFGVEAYY-VDNRLEKDRSNN-------HIILIALNRDGFKDINRIISEANLSG-YYYKP 115

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           RI    +  +  + +I+ T   +G       F +    EK ++     F D  Y+ +Q H
Sbjct: 116 RIDKELILSLNPKNVIVTTACIAG-----RLFKTKDYEEKFVIPLLNHFKDHFYLEVQSH 170

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
           +    Y   Q+++L + + L L+  N+S ++   D +  D+ +         +       
Sbjct: 171 KQQSEY-NKQILELKFKYNLSLIHANDSHYIHSRDAKYRDMFLKAKGIIYEDEGGFILDY 229

Query: 250 PDHYLKNRSEMVSIFS--------DLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
           P++      E+V  +          + E+L NT+ I  +C   L+    I       +  
Sbjct: 230 PNY-----DEIVERYEKQGVLNKEQIQESLNNTL-IFDKCE-DLKFDKEI-------KIP 275

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            + K++++    K +   E +  +  I +     +Y + +  E++++ +     YF++  
Sbjct: 276 KVHKDKDSNKLLKTIISNEWKKERNNICRDKWN-EYEKAIKEEVDIVQKTNMEDYFILDY 334

Query: 362 DFIQWAKK--NNIPVGPGRGSGAGSVTAYALTITDIDPL--RFSLLFERFLNPDR----M 413
           + ++ A      +    GRGS         L  T+ID +    +L   RF++  R     
Sbjct: 335 EIVKKAVDEYKAVLTRTGRGSAPSFYINKLLGFTNIDRVSAPITLYPTRFMSTTRILQTR 394

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
           S+PD D+++     + VI+  ++  G + V  +I +  LQ  +A R   ++     ++ +
Sbjct: 395 SLPDIDLNW--ANIEPVIKSSKDILGEDGVYFMIAYKPLQNSSAFRLWCKSKGFNINEYN 452

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            + K + +                     + D    +++E S+   G+    +      +
Sbjct: 453 EIAKNLDD--------------------YIEDEKWGKIIEESKIFRGVIESVAPSPCSFL 492

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
           + D+P+S+ + + +    +      +    ++   +K D+L +   +++ K  + + +  
Sbjct: 493 LLDKPISEEIGLIK--VGNQICCCLDGYNCDQYKYLKNDYLTVSVWSIISKVYEMIREPI 550

Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +   L    D++ ++L     T  + Q +S+     ++   P  I +I A V+  RPG
Sbjct: 551 DTIQ-QLENKVDYKVWNLYKLGLTATLNQADSNYATPLIKKYSPKSIAEISAWVASIRPG 609

Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               +  +  RK     +  +  L+     ++   ++YQE +M+    L    ++E +  
Sbjct: 610 FASLMSNFLERKPYTTGVKELDNLLQ----DSYHYMMYQESIMKYLVWLG---IAEDETY 662

Query: 714 ----RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
               + A  K  ++E++  KE+ + G  KN   K    N ++++   + Y FN SH+ + 
Sbjct: 663 GIIKKIAKKKFKEKELEALKEKLLKGWIKNVGKKEGFENTWQVVNDASKYSFNASHSLSV 722

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            + S   A++K +YP+E+    + +   + E+  K   +   FNI I+ P       ++ 
Sbjct: 723 GIDSLYGAYLKANYPLEYYTVVLNMYEGDTEETSKIVDELNYFNITILSPKFRYSKSEYM 782

Query: 830 VGDNRIYY 837
               +  Y
Sbjct: 783 CDKEQNLY 790


>gi|227499278|ref|ZP_03929390.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
 gi|227218629|gb|EEI83863.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
          Length = 1358

 Score =  347 bits (891), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 160/966 (16%), Positives = 329/966 (34%), Gaps = 210/966 (21%)

Query: 57   EFSQKACAAGIQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVPS----IVLLVSTAEGYQR 111
              S  A A     I   ++ + +   +L   N+ K+ +P          +      G + 
Sbjct: 485  RASDDARATAQIFIKMFKMIMKEDGIDLSSINKLKSYWPKAKHEYFSATVFAKNKIGLKN 544

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L +L+S   +        +  LS L++   EGL++ +G     +        ++    ++
Sbjct: 545  LYKLISESRMK-YFNDEAKTPLSVLEKY-REGLLLGSGSDESMLFSYLQNKRNKKDIDKI 602

Query: 172  LTFKK--------LFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLS 221
                         +F DR  VN  + R +++ RE   +++  A       VAT    +L 
Sbjct: 603  RGLFDFYQMAPLGVFNDR--VNKGKLRDFNQVREINEKILAFAKEDNKLAVATGAVRYLQ 660

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIAR 279
            +++Y   ++L           +        +YL+   EM+  FS L   +A +  +   +
Sbjct: 661  KDEYILRNILHKGQFFKYHENE------ALYYLRTTKEMMDDFSYLSPIDAEDVVIRNPK 714

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
            +    ++   PI       + +      + ELR    A         +I      +    
Sbjct: 715  KIVDFIEDIRPIPKGTFPPKIEG----SDTELRETCFAKAH------SIYGDPLPKIVED 764

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL+ ELN I    ++  ++I    +  + ++   VG  RGS   S  A    IT+++PL 
Sbjct: 765  RLNRELNSIISNGYAVLYIIAKKLVGKSNQDGYLVG-SRGSVGSSFAATMADITEVNPLS 823

Query: 400  -----------------------------------------FSLLFERFLNPDRMSMPDF 418
                                                      ++ FE FL  +    PD 
Sbjct: 824  PHYVCPKCKHSEFFEDDLLGAGIDYPDKTCPECGTMMKKDGHNIPFEVFLGFEGDKEPDI 883

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +  + +Y +  +G  +V +  T G++Q   A   + +               
Sbjct: 884  DLNFAGEYQPTIHKYTEELFGEGKVFRAGTIGAIQDNTAFGYIKKY-------------- 929

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                             S   + +  +  V ++    + L+ + R    H  G+++    
Sbjct: 930  -----------------SEDYQIQFTNAQVRKIQ---RGLKDVKRTTGQHPGGLIVVPDD 969

Query: 539  L--SQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            +    + P+     D R D+  T F    + +  L+K D LG    ++++   D      
Sbjct: 970  IEIFDICPIQYPADDGRGDIKTTHFTYNMMHET-LLKLDLLGHDVPSIIRALQDLTGTNP 1028

Query: 594  VKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQALEGMQPDC 639
            +++ +      D     + ++               GTLGI +  ++ +R  L+   P  
Sbjct: 1029 LEITMG-----DPRVMKIFSSTETLDIKHDFSNNEIGTLGIPEFGTNFVRGMLKDAYPTK 1083

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI- 698
              ++  +  L       ++ + N +   + KI S   +I             ++ +M   
Sbjct: 1084 FSEMTRISGLSHGT---DVWLNNAQDLVRNKIASFDEIIS-----------TRDDIMNAL 1129

Query: 699  --AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
                L    S S  + +R+      +E +   ++        NG+ +    +  ++    
Sbjct: 1130 IQQGLDKKKSFSIMEKVRKGKSL-SEETLAYMRD--------NGVPEWYIESCLKI---- 1176

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC---------- 806
              Y F K+HA AY ++SY+ A+ K +YP  F A     ++++  K               
Sbjct: 1177 -QYLFPKAHAVAYCLMSYRIAYYKVYYPEAFYATYFNTKINDF-KYSTIIKGLGEIQKAL 1234

Query: 807  -----------------------QDARQFNIQIMPPSVNTPCVDFKVGDNRIYY---SLA 840
                                   ++    +I++    +        +  +R  Y    L+
Sbjct: 1235 SEIGGDYDLTQRDKQIRTVLEVSEEMAARDIRLEKADIYKSDAKKFLLSDRKGYILPPLS 1294

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRM 899
            A+  V    A  I+       F SLED  +R      N+  + SL   G +D     +++
Sbjct: 1295 AVDDVSEAMALDIVREREKGEFISLEDLKNRTSV---NKNAITSLKNLGIIDGIQEENQI 1351

Query: 900  QLLQSL 905
             L   L
Sbjct: 1352 SLFDGL 1357



 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 41/88 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L++H+  + L+G +   ++L  + A +  A+ ITDT  L +  +        GI+ + 
Sbjct: 250 IELEIHTKMTNLDGFVDNKDLLRTLKAWKMGAVGITDTETLQALPDLYDSLSKEGIRMLP 309

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
           G +L +   +   +TN      P +  I
Sbjct: 310 GAELLLVDDELRVLTNLSDEEVPPIKKI 337


>gi|3676693|gb|AAC62072.1| DNA polymerase [Treponema denticola]
          Length = 361

 Score =  346 bits (888), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 109/366 (29%), Positives = 182/366 (49%), Gaps = 17/366 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FVHL VHS +SLL+GA S+  +  K     Q A+A+TD  N+F A+ F        I+P
Sbjct: 4   DFVHLHVHSDFSLLDGAASVKALAAKAEKLGQTALALTDHGNMFGAINFYNACKEKNIKP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIGC+  +  +   +   +          ++LL     GY+ L+ L S+ Y         
Sbjct: 64  IIGCEFYVAPESRFE--KKETPGGKKYYHLILLAKNETGYRNLMVLCSKGYTEGM-YYKP 120

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
           RI    L +   EGLI L+   +G +         + AE  +  ++++F  +  ++ LQ 
Sbjct: 121 RIDDELLAQYA-EGLICLSACLAGELPVLLLNGEKEKAEAHVRKYREIFGAENYFIELQD 179

Query: 189 HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H   +  + S+ ++++A    +PLV TN+  ++ ++DY A D+LM +    + +  +R +
Sbjct: 180 HGLKEEKKASKLLIEMARKVGVPLVLTNDIHYVEQKDYVAQDILMCIGMKKLRTDTNRMQ 239

Query: 248 VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + Y K+  EM  +F + PEA+ NTV IA  C+  +    PILP +   E       
Sbjct: 240 FEGSEFYFKSGEEMAQLFPEYPEAILNTVRIAEMCNLEIPQPGPILPIYKIPED---FSS 296

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
           +E+ +R+ A   L+ R             + + RL++EL+++ +M F GYFLIV DFI W
Sbjct: 297 KEDYIRHLAEGSLKKRYP-------VITDEIKNRLNYELDIVIKMDFVGYFLIVWDFINW 349

Query: 367 AKKNNI 372
           AK N +
Sbjct: 350 AKNNGV 355


>gi|12044881|ref|NP_072691.1| DNA polymerase III PolC [Mycoplasma genitalium G37]
 gi|1352298|sp|P47277|DPO3_MYCGE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|3844641|gb|AAC71247.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            genitalium G37]
 gi|166078825|gb|ABY79443.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic
            Mycoplasma genitalium JCVI-1.0]
          Length = 1451

 Score =  345 bits (885), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 164/907 (18%), Positives = 309/907 (34%), Gaps = 188/907 (20%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++ V    G+Q L E++S   L D       +  S L +     L +      G I +A 
Sbjct: 615  IVYVKNQRGFQNLYEMLSIA-LTDHNANRPLVLASSLAKFRKSFL-LTENPVQGDIFKAA 672

Query: 160  FFNSSQVAEKRLL--TFKKLFGDRLYVNLQRHRGYDRYRESQVVQL----AYTHELPLVA 213
                    EK +    F  +     Y+      G  +   +  ++L    A   +  +  
Sbjct: 673  LTKPINELEKAIEKVDFVLISQPNAYLGYTLREGLKKELINDAIKLVIKTATKLKKLVAV 732

Query: 214  TNNSLFLSEEDYEAHDVLMAVAH-----STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             +++ F+   + E +  ++             + K++ +  P+ +L    EM+   S L 
Sbjct: 733  ASDAYFIHPWENEYYKAIVCAKGLGGKWHRHFNNKEKEQTVPEVFLHTTDEMLKRMSFLG 792

Query: 269  EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
            E +   + +      +  +    L     K    + ++   +L +K     E R  +   
Sbjct: 793  EDIAYKLVVENTNKIVKLLDLNELVPTKNKLYPPVMQDSNQKLIDKTWKQAEKRYGKNL- 851

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                  +  ++R++ ELN I    F   F I    ++ + K+   VGP RGS   S+ A 
Sbjct: 852  -----PKLIKERIEKELNAIISNGFGIVFWISHLLVEQSVKDGYFVGP-RGSIGSSLIAN 905

Query: 389  ALTITDIDPL-----------------------------------------RFSLLFERF 407
             + I++I+PL                                           ++ F  F
Sbjct: 906  LIGISEINPLAAHYLCEQCHYFEVSDSVDDGYDLMIRDCPKCHEKASFKGDGHNIPFATF 965

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            +      +PD D++F  + + +   YV+  +G     +  T  ++  K A        ++
Sbjct: 966  MGFSGDKIPDIDLNFSSEYQAKAHDYVRKLFGVNNTFRAGTIATVAEKTAYGYARNYFEI 1025

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                               V L   A+  RF+                QKL G+ R    
Sbjct: 1026 ----------------IKRVDLATTAEIERFK----------------QKLIGIKRTTGQ 1053

Query: 528  HAAGIVI--GDRPLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            H  GI+I   D  + +  P      DV S+   T F    +  A ++K D LG    T+L
Sbjct: 1054 HPGGIMIFPSDHSVYEFTPCGFPADDVESEWKTTHFEYDALGDA-ILKLDILGQDDPTML 1112

Query: 583  QKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGM 628
            +   D        ++   IP  D     + ++               G +GI +  +  +
Sbjct: 1113 KHLADLTK-----INPQNIPHFDKNLISMFSSNKPLNLKPGIVDEVTGAVGIPEFGTKFV 1167

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            R+ LE  +P    D+I +  L       N+   N +K           LI       + V
Sbjct: 1168 RKILEQTKPKDFADLIRVSGLSHGK---NVWADNAQK-----------LIKSNRLTLRDV 1213

Query: 689  IIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
            I  ++ +M       + +  +    + +R+ + K   +E+   +                
Sbjct: 1214 IACRDDIMLYLINKGMQAKDAFEIMEKVRKGI-KVNAKEVSLMQN-------------CG 1259

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT-----LEMDNVE 800
                +       +Y F K+HAAAY +++++ AW K ++P+ + A  ++      +++  E
Sbjct: 1260 VEQYWINACLKINYLFPKAHAAAYVLMAWRIAWFKLYHPLSYYACLLSFKLKEHDINGFE 1319

Query: 801  KIKKFCQ------------------------------DARQFNIQIMPPSVNTPCVDFKV 830
            K  +F +                              +    NI++   S+        V
Sbjct: 1320 KGYEFIKNRLDELNKLYRIKKIKPKEAELLTSYEVYLEMMARNIKLQQISIQNSNARMFV 1379

Query: 831  GDNRIYY-SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              N +       I G+G   A  I+EA  +KPF SL DF  R    K +   +E L    
Sbjct: 1380 EHNGVLIAPFITIPGMGEAVASSIVEARNEKPFASLNDFKKRTKITKKHVETMEQLQL-- 1437

Query: 890  ALDCFGY 896
              D F +
Sbjct: 1438 -FDEFEH 1443



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 1/99 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  +  +G   +             AI +TD +N+    +F + A    ++ I 
Sbjct: 330 VELVFHTKMTAFDGINDIEEYAQFAKERGWKAITVTDKDNIHIYPKFYEVAKKYDLKAIY 389

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
           G + ++       + N   T       ++  + T  G  
Sbjct: 390 GLEFNLTDDHIKIVHNPDNTKLSDATFVIFDIET-TGLH 427


>gi|4566842|gb|AAD23482.1|AF117853_1 DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|4566843|gb|AAD23483.1|AF117854_1 DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|4566844|gb|AAD23484.1|AF117855_1 DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|4566845|gb|AAD23485.1|AF117856_1 DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|4566846|gb|AAD23486.1|AF117857_1 DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|4566847|gb|AAD23487.1|AF117858_1 DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 356

 Score =  344 bits (883), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 135/372 (36%), Positives = 200/372 (53%), Gaps = 21/372 (5%)

Query: 26  ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKM 85
              +  ++ K+AA   PA+A+TD  NL   ++F   A   G++PIIG             
Sbjct: 1   LSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DF 50

Query: 86  TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
           T Q +     +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI
Sbjct: 51  TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLI 109

Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLA 204
           +L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A
Sbjct: 110 VLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVA 169

Query: 205 YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSI 263
             ++LP+VATN  +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +
Sbjct: 170 EQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCEL 229

Query: 264 FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
           F+D+PEAL N+VEIA+RC+  +++    LP F            E+ L  K+  GLE RL
Sbjct: 230 FADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERL 284

Query: 324 A---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                    +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGS
Sbjct: 285 EFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGS 344

Query: 381 GAGSVTAYALTI 392
           GAGS+ AYAL I
Sbjct: 345 GAGSLVAYALKI 356


>gi|309804243|ref|ZP_07698320.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 11V1-d]
 gi|308163646|gb|EFO65916.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 11V1-d]
          Length = 674

 Score =  343 bits (880), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 138/749 (18%), Positives = 256/749 (34%), Gaps = 189/749 (25%)

Query: 250 PDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPRFIE---KEC 300
           PD +     EM+  FS L         ++NT  IA +   +  + + + P  IE   KE 
Sbjct: 2   PDLHFYTTQEMLDAFSFLDPKIAEEIVIKNTNIIADKIENVEPIKSGLYPPHIENADKEM 61

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
           + +  ++ +EL                       +  + RL++EL  I    ++  +LI 
Sbjct: 62  EQLTYDKAHELYG-----------------NPLPKIVKDRLEYELKSIISNGYAVIYLIS 104

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------RFSLLFER----- 406
              +  + K+   VG  RGS   S+ A    IT+++PL         ++S  FE+     
Sbjct: 105 QRLVAKSNKDGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGS 163

Query: 407 ---------------------------FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                      FL      +PD D++F  D +     Y++  +G
Sbjct: 164 GYDLPDKKCPKCNADLAKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFG 223

Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
            +   +  T G++  K A   V                            +   D++  +
Sbjct: 224 PDNSYRAGTIGTVADKIAYGYV----------------------------KHYEDENELK 255

Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRS---DLP 554
              L +  +DRL   SQ   G+ R    H AGIV+   D  +    P+            
Sbjct: 256 ---LRNAELDRL---SQGASGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWL 309

Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT- 613
            T F+   I    ++KFD LG    T+++   D        VD   IP  D     L + 
Sbjct: 310 TTHFDFHSIHD-NILKFDILGHDDPTMIRMLQDL-----SGVDPLTIPPCDPGVMSLFSG 363

Query: 614 -------------TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                          GTLG+ +  +  +R  LE  +P    +++ +  L     +     
Sbjct: 364 TDILGVTPEQIGVNTGTLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNA 423

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +    G  K+ ++    D ++ +     +  E           +S  E+    + +  +
Sbjct: 424 EDLINKGICKLKNVIGCRDNIMTDLIHWDVPPEVA---------FSTMESVRHGKGISDE 474

Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               + K K                  + +        Y F K+HA AY +++ + AW K
Sbjct: 475 NMAILSKNKN---------------IPDWYIQSCLKIKYMFPKAHATAYILMALRIAWFK 519

Query: 781 THYPVEFLAASMTLEMDNVEKIK---------------------------------KFCQ 807
            +YPV +  + +++  D  + +                                  +   
Sbjct: 520 VYYPVIYYTSYLSVRADLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIAN 579

Query: 808 DARQFNIQIMPPSVNTP-CVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
           +  +  I I    +     ++FK+  ++ I      + G+G   A+ I+ A  ++PF S 
Sbjct: 580 ECLERGININMVDIEKSDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSK 639

Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCF 894
           ED   R    K+++ ++E     G LD  
Sbjct: 640 EDLSIR---GKVSQTIMEYFENNGVLDGL 665


>gi|227872420|ref|ZP_03990765.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
 gi|227841738|gb|EEJ52023.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
          Length = 720

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 146/765 (19%), Positives = 255/765 (33%), Gaps = 162/765 (21%)

Query: 203 LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
           +    + P+ AT ++ +  EE+     +++A    T    + R         ++ +EM+ 
Sbjct: 1   MGEQLKKPVCATCDAHYADEENDVLRRIVLATKGMTDEEGEARLF------FRSTTEMLE 54

Query: 263 IFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
            FS L         ++N ++I + C  I  V     P  IE          +  LR    
Sbjct: 55  EFSYLDSNTQKQVVIDNPLKIMKMCEPIKPVRPDKCPPIIEHS--------DETLRQICY 106

Query: 317 AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                             +    RL+ ELN I    +S  ++I    +  + ++   VG 
Sbjct: 107 ETAHKIYGPKL------PEMVENRLETELNSIISNGYSVMYIIAQKLVDKSNEDGYLVG- 159

Query: 377 GRGSGAGSVTAYALTITDIDPLR------------------------------------- 399
            RGS   S  A    IT+++PL                                      
Sbjct: 160 SRGSVGSSFAATMAHITEVNPLPPHYVCPNCYYTDFDSEEVKSYSGMAGYDMPSKNCPHC 219

Query: 400 --------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                   F + FE FL  D    PD D++F  + +     Y    +G E   +  T G+
Sbjct: 220 GTVLNRLGFDIPFETFLGFDGDKEPDIDLNFSGEYQARAHAYTGAIFGEENTYKAGTIGT 279

Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
           L  K A   + +                                  F E R        L
Sbjct: 280 LAEKTAYGMIKK----------------------------------FYEERGEKKRTAEL 305

Query: 512 LEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKA 566
             +   + G+ R    H  GIV+      ++   P+     D  S +  T F+   I+  
Sbjct: 306 NRLVAGITGIRRTTGQHPGGIVVLPHGEDINTFTPVQHPANDTESPIITTHFDYHKIDH- 364

Query: 567 GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K D LG    T+++K  D      V      IP D  E   L  +   LGI   +  
Sbjct: 365 NLLKLDILGHDDPTMIRKLQDLTGLDPV----KDIPLDSPEVMSLFQSTEALGISPADIQ 420

Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKET 685
           G+     G+     +  + +V   +P  + +++  +   +G +  ++    LI   +   
Sbjct: 421 GVELGCLGIPEFGTQFAMQMVQDTKPKYLSDLIRISGLSHGTDVYLNNAQDLILSGVTTL 480

Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
           +  I  ++ +M     + G    E+  +  A  K    + +  +     G  +  I    
Sbjct: 481 REAICCRDDIMVYLMHM-GLEPGESFNIMEATRKHKPLKDEWCEHMLEHGVPQWYIDA-- 537

Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD--NVEKI- 802
                    K   Y F K+HAAAY +++Y+ A+ K  YP E+  A  T+  D  + +K+ 
Sbjct: 538 --------CKKIKYMFPKAHAAAYVMMAYRVAYCKVFYPKEYYTAYYTVRADGFDFDKMC 589

Query: 803 -----------------------------KKFCQDARQFNIQIMPPSV-NTPCVDFKV-G 831
                                         K C++     IQ  P  +      DF++  
Sbjct: 590 FGVEKLRFHIKEYSAREKLSATDQLCLRDMKICEEMYARGIQFAPLDIYKAKAKDFQITE 649

Query: 832 DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
              I  S + I G+G   A+ + E +    + S +DF  R    K
Sbjct: 650 KGEIMPSFSCIAGLGEAVAQGLEEGAKYGKYLSKDDFIQRTHCPK 694


>gi|167465812|ref|ZP_02330901.1| DNA polymerase III PolC [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 694

 Score =  342 bits (878), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 128/765 (16%), Positives = 257/765 (33%), Gaps = 174/765 (22%)

Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                +++++      P++AT N  +L   D    D+ +   +        +    PD +
Sbjct: 8   EDAVKRIIRIGEKLGKPVIATGNVHYLHPRDKVCRDITI---NGITGFSPLKDMKKPDAH 64

Query: 254 LKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            +  S+M+  F  L +  A E  V+     +   +        F +K    I +  + E+
Sbjct: 65  FRTTSDMLEQFQFLGKEKAYEVVVKNTNELADRFEELE----LFPDKLFTPIIEGADEEI 120

Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
           R K     +    +         Q    RL+ EL  I +  FS  +LI    ++ + ++ 
Sbjct: 121 RTKCYNTAKQIYGEDL------PQVIIDRLEKELVPIIKYGFSANYLISERLVKKSNEDG 174

Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRF------------------------------- 400
             VG  RGS   SV A  L I++++PL                                 
Sbjct: 175 YLVG-SRGSVGSSVVAMMLGISEVNPLPPHYICSSCKHSEWFMDGSVPSGFDLPDKECPH 233

Query: 401 ----------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
                      + FE FL      +PD D++F  + +     Y +  +G + V +  T G
Sbjct: 234 CGGKLKGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPVAHNYTKVLFGEKNVFRAGTIG 293

Query: 451 SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
           ++  K A   V +  +                          +   ++R A ++      
Sbjct: 294 TVAEKTAFGYVKKYEE--------------------------SLGKKWRNAEIS------ 321

Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEK 565
              ++    G+ R    H  GIV+      +  + P+     D +S+   T F+    + 
Sbjct: 322 --RLASGCTGVKRSTGQHPGGIVVVPDYIEVDDITPVQFPADDTKSEWKTTHFDYHAFDA 379

Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------- 616
             L+K D LG    T+++   D        VD   IP +D +   +  +           
Sbjct: 380 -NLLKLDILGHDDPTMMRMLQDLTG-----VDPLKIPMNDPKVMSIFNSTDALGVTPEQI 433

Query: 617 -----TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                T G+ ++ +  +RQ L+  QP    D++ +  L     +                
Sbjct: 434 RSPVGTFGVPEMGTKFVRQMLQETQPSSFADLLQISGLSHGTGVWLG------------- 480

Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
            +   LI   +   + VI  ++ +M      +G     A  +  ++ K      + ++E 
Sbjct: 481 -NAQELIRKGICSIKTVIGCRDDIMLYLIYKAGMDAGLAFKITESVRKGKGLTDEWKEE- 538

Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
                    + K    + +    +  +Y F K+HAAAY + + +TA+ K ++P+ F A  
Sbjct: 539 ---------MKKHNVPDWYIESCERIEYMFPKAHAAAYVISAVRTAYYKLYHPIAFYATY 589

Query: 792 MTLEMDNVE---------------------------------KIKKFCQDARQFNIQIMP 818
            ++  ++ E                                  I +   +         P
Sbjct: 590 FSVRAEDFELDLLCQGYDTILKRLIEIEEKGFQALPKERAMISILEMALEMTARGFSFKP 649

Query: 819 PSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
             +     + F +  + +    +A+ G+G   A++I  +     F
Sbjct: 650 VDLYRSEANKFIIDGDSLIPPFSAVPGIGENAAKNIAASREGGDF 694


>gi|330901815|gb|EGH33234.1| error-prone DNA polymerase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 377

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 191/386 (49%), Gaps = 22/386 (5%)

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                + +L+    +   + D    L  +V IARRC+F L       P  +  +     +
Sbjct: 9   LFANGERHLRPLDALSEHYPDW--LLAESVRIARRCTFDLGDLKYEYPHELVPKG----Q 62

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + LR     G+  R   G           R +++ EL +IA  KF  YFL V D ++
Sbjct: 63  TSTSWLRELTERGVRRRWPGGLTPAT------RAQVEKELALIAEKKFDSYFLTVHDIVE 116

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  D
Sbjct: 117 FARSQHI-LCQGRGSAANSAVCYALGITELNPEQSNLLFERFISRERNEPPDIDVDFEHD 175

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L +        
Sbjct: 176 RREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPDQINALAEAFSRWS-- 233

Query: 486 PVSLQAIADDSRFREARLAD--PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                ++    R RE       P + R+L ++ +L G  RH S H  G VI + PL  LV
Sbjct: 234 ----DSLPSPERLREYGFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLV 289

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602
           P+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   R  +  L+ +P
Sbjct: 290 PVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRDQRWTLASLP 349

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGM 628
            DD +TY +++   T+G+FQ+ES   
Sbjct: 350 GDDRKTYEMISRADTVGVFQIESRAQ 375


>gi|283769479|ref|ZP_06342375.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia
            extructa W1219]
 gi|283103747|gb|EFC05133.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia
            extructa W1219]
          Length = 1442

 Score =  341 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 165/982 (16%), Positives = 306/982 (31%), Gaps = 242/982 (24%)

Query: 48   DTNNLFSALE--FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
            D N L  A E           ++ I   Q  +    + K               +++   
Sbjct: 543  DANILADAFEHLLVDAKRQFQVETIRDLQDKVHTDSDFKR--------MFSKHAIVIAKN 594

Query: 106  AEGYQRLIELVSRMYLL----------DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
              G + L +LVS                      RI  S LQ+   + L++ +   +G +
Sbjct: 595  QAGLKVLYDLVSISNTETLAVKTKNEGSNAIGEPRIKRSTLQKY-RQNLLVGSACLNGEV 653

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVV 201
                        +K +  +        Y+ LQ    Y               +  + +++
Sbjct: 654  FEMACNGDDDRLKKTMAFYD-------YIELQPLGNYSTSLELGSLPNLARLKEVQQRMI 706

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK--------DRPRVTPDHY 253
             +A+  ELP++AT++  +  +E+    D+ +       ++           R    PD +
Sbjct: 707  AMAHELELPILATSDCHYCKQEEKIFRDIYITAKGVGGIAHPLYIRNEQIRRSHPNPDQH 766

Query: 254  LKNRSEMVSIFSDL-------PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            L+   EM+  FS L          L+   ++ +    I  V     P  IE         
Sbjct: 767  LRLTDEMIKEFSWLNNSQLVEELVLDTPHQLFKEIEEIEPVPKGTYPPIIEGS------- 819

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +++LR         R       +G      ++RLD EL+ I R  F  ++ I +  +  
Sbjct: 820  -DDQLRELCQKTAMDRYGF----RGKVPDLVQKRLDNELDNIIRNGFGVHYYIASLLVMK 874

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
              ++   VG  RGS   S  A    IT+++PL                            
Sbjct: 875  TNEDGYVVG-SRGSVGSSFAATMSHITEVNPLPPHYLCPQCHYSEFFLNGEVLSGFDLED 933

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                           ++ F+ FL  +    PD D++F    + +   ++++ +G E   +
Sbjct: 934  KSCPHCGAIMKGNGHNIPFQTFLGFNADKTPDIDLNFSDLYQAKAHNFIKDYFGEEHAFR 993

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V                            +   +D   + +    
Sbjct: 994  AGTIGTVAEKTAFGYV----------------------------KGYEEDMGVQFSYPMK 1025

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVR--SDLPVTQFNMK 561
                    ++   + + R    H  GIVI   +  +    P+            T F   
Sbjct: 1026 EY------LAMHCQDVKRTTGQHPGGIVIVPSNHVVEDFTPIQYPSNQPGPWKTTHFEYH 1079

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------- 612
                  ++KFD LG    T ++     L Q    V    IP +D +T  L          
Sbjct: 1080 DYGDQ-ILKFDILGHVDPTSMR-----LLQEIATVKPMDIPMNDRDTLSLFYEDKALKAD 1133

Query: 613  -----TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
                    G +G+ +  ++  R+ L+   P    D+  L  L     +          N 
Sbjct: 1134 PRLYHQETGAVGLPEFGTANTRRVLQETNPHTFSDLTILSGLTHGTDVWAG-------NA 1186

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEE 724
            +E +   HPL + +          ++ +M      +L    S    + +R+   K + EE
Sbjct: 1187 EELVKQGHPLNEVIG--------CRDDIMTYLLDKKLEPLDSFKIMESVRKG--KGLTEE 1236

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
                         +  + +    + +    K   Y F K+HA AY +++ + AW K H P
Sbjct: 1237 ------------QEKTMREHQVPDWYIDSCKKIKYMFPKAHAVAYVMMAVRIAWYKVHEP 1284

Query: 785  VEFLAASMTLEMD---------------------------------NVEK----IKKFCQ 807
            + F    +TL  D                                 N +K      + C+
Sbjct: 1285 INFYIQYLTLRCDAYDISIMSKGLNAIRLEMDRIKKLMDTRDPSLSNKDKALFNTLEICE 1344

Query: 808  DARQFNIQIMPPSVNTP-CVDFK---VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
            +       I   ++       FK        +      +  +G + A  I+EA     F 
Sbjct: 1345 EMYARGYSIENVNLYESLSTRFKKSPTNPKAVIPPFVVVDSLGESVAETIVEARQSGEFL 1404

Query: 864  SLEDFCSRVDSKKLNRRVLESL 885
            S ED  +R    K   +  E +
Sbjct: 1405 SKEDLLARTHLSKTLLQRFEEM 1426



 Score = 54.6 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 21/47 (44%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
           +    H+++S ++G  S   ++          I +TD  N+ S ++ 
Sbjct: 300 IEFHSHTNFSEMDGVCSPQEVIQYAWDLGHEGIVLTDHANVQSFVKA 346


>gi|213022841|ref|ZP_03337288.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. 404ty]
          Length = 346

 Score =  341 bits (874), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 119/318 (37%), Positives = 170/318 (53%), Gaps = 4/318 (1%)

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W
Sbjct: 2    KKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 61

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-Y 837
            +K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D     Y
Sbjct: 62   LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVY 121

Query: 838  SLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ +GA D  G 
Sbjct: 122  GIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 181

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENE 955
             R  L+ SL +  K A    K       ++F    +     + +          V  + E
Sbjct: 182  HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGE 241

Query: 956  QRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +   T++G+R
Sbjct: 242  RETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNR 301

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            IG  T  + +   E   F
Sbjct: 302  IGICTLDDRSGRLEVMLF 319


>gi|26554369|ref|NP_758303.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
 gi|26454379|dbj|BAC44707.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
          Length = 1458

 Score =  340 bits (873), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 153/904 (16%), Positives = 300/904 (33%), Gaps = 199/904 (22%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I +        + L +L+S   L        ++      E      I+    + G I  A
Sbjct: 616  ITVYCKNEGEIRNLYKLISTS-LTSNFDGGPKVYWENFNEFNNSF-IVSNSATEGEIFEA 673

Query: 159  FFFNSSQVAEKRLLTFK--------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELP 210
               N+ QV E  +            + F   ++  + +    +     +++++A  +   
Sbjct: 674  AMSNTQQVLEDIIKDKYDFITIGSPECFLHDIHREIYKRGWIEDAI-KRIIKIANKYNKK 732

Query: 211  LVATNNSLFLSEEDYEAHDV-----LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
            +VAT+++ +L+E D     V     ++    + +    +   V P +Y +   E+   FS
Sbjct: 733  VVATSDTYYLNESDEVYFRVYVNAKVLGGKRNRLFKYNELNTVLPKYYFRTTDELKDEFS 792

Query: 266  DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
             L     N   +                 +I    D   K  +  L +  + G   +L Q
Sbjct: 793  FL-----NDPVLVNDIVVT-------NSNYIASLIDANIKPIKETLHSPHIEGASDKLKQ 840

Query: 326  GAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                K Y         D + R+D E++ +    ++  +      ++ +  +   VG  RG
Sbjct: 841  LIYQKSYSIFGDAMNNDVKARIDREISSVIDNGYAMIYWFSHLLVKQSVDDGYVVG-SRG 899

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------F 400
            S   SV A+ + IT+++PL                                         
Sbjct: 900  SVGSSVAAWLVDITEVNPLEPHYICTNCKYFNFEKNVDSGFDLPESNCPKCKSKLKGDGH 959

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            ++ FE F+      +PD D++F    + +   +++N +G ERV +  T  +   K A   
Sbjct: 960  NIPFETFMGFKGDKIPDIDLNFSAVYQGKAHDFIKNMFGEERVFRAGTISTTAEKTAYGY 1019

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V                                    F E++  +     +  I++K E 
Sbjct: 1020 VKSY---------------------------------FEESKKMNARNAEITRIAKKCEN 1046

Query: 521  LYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLG 575
            + R    H  GIV+    + +    P          D   T    + +    L+KFD LG
Sbjct: 1047 VKRTTGQHPGGIVVVPHGKDVYDFTPFNYPADDKTQDWFTTHLAFESLHD-SLLKFDILG 1105

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL----------------G 619
                T+L+   +        V+   IP  D++   L  +  +L                G
Sbjct: 1106 HDNPTILKMLTE-----QTNVNADTIPNFDNDVMDLFNSTDSLKIKNPMINKILKTGSSG 1160

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            I +  ++ +++ L   +P    D+I +  L     + N               +   LI+
Sbjct: 1161 IPEFGTNFVKEMLLVTKPQKFSDLIRISGLSHGTNVWN--------------DNAKYLIE 1206

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
                    VI  ++ +M +  +  G +   A  +   + K      + QK         N
Sbjct: 1207 EKGLTISDVISCRDDIM-VYLIDKGITPIIAFKIMEDVRKGKGLNEEYQKVLND-----N 1260

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
             I      +  ++      Y F K+HA AY +++++ AW K +YP+ F A+  ++ +   
Sbjct: 1261 NIPTWYIESCNKI-----SYLFPKAHATAYVIMAWKIAWFKIYYPLHFYASYFSIRIKVF 1315

Query: 800  E-------------------------KIKKFCQ--------------DARQFNIQIMPPS 820
            +                         K K   +              +      +     
Sbjct: 1316 DIKSILNGESEITNKINEIKEKMANPKTKALVKNKELDLIPIYELALELLGRGYKFANID 1375

Query: 821  VNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +      DF V  + +    +AI G+G + A  I++A  +K F S EDF  R      + 
Sbjct: 1376 LKKSLATDFLVEGDYLIPPFSAIDGLGDSVATSIVKAREEKMFSSKEDFKKRTKVTTTHM 1435

Query: 880  RVLE 883
            +++E
Sbjct: 1436 KIME 1439



 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-GIQPI 70
             L  H++ +  EG +++  +    +     ++AITD  N  +  +F  +A     ++ I
Sbjct: 334 TELVNHTNMTAFEGLVNIKELFKFSSEMGYSSVAITDKFNCQNFPDFYNEAKKYSKLKAI 393

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
            G Q +I  ++   + N   T       ++  + T
Sbjct: 394 YGVQFNIIDKNIPIVLNANDTKISDATYVIFDIET 428


>gi|75758944|ref|ZP_00739054.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74493545|gb|EAO56651.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 420

 Score =  340 bits (872), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 208/368 (56%), Gaps = 3/368 (0%)

Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                 +E +       RL E++ ++E + R    HA G++I   P++  V + R  +  
Sbjct: 5   EALEEIKEVKAYAKRYPRLFELALEVESMPRTQGIHACGMLITAEPITNEVALVRG-KGG 63

Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHL 611
             +  ++   +E  G IKFDFLGLK L++++     +  R    +D+  +  +D +T+ +
Sbjct: 64  ESIAGYDGPTLEAKGYIKFDFLGLKNLSVVELCRRMVEDRYGYLIDVDNLIPEDQKTFDM 123

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
           +    T G+FQ+ES GM++   G+     E +IA VSLYRPGP+D I  Y    NG E++
Sbjct: 124 IQRGETDGVFQIESDGMKKMFMGLNKVDFETLIAGVSLYRPGPMDYIPKYTALANGHEEV 183

Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
             +HP  D + + T  ++IYQEQVMQ++  ++GYS  EADVLR+A+GKK  E ++   E 
Sbjct: 184 PQVHPAFDEITRNTFSIMIYQEQVMQVSTEMAGYSKGEADVLRKAVGKKKIEILEPALEE 243

Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
             +  ++N +   +A  I + +  FA Y FN+SHAA YA I+YQTA++K +YP+E++ A 
Sbjct: 244 LHNRLTQNNVPTQVATKICDDIRPFAGYAFNRSHAACYAYIAYQTAYLKANYPLEYMTAL 303

Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTA 850
           + +     +K+ K  +  R   I+++PP +N   + F + G+N I + L AIKG+G  T 
Sbjct: 304 LQVFYTEEDKVVKLVKVIRDMGIEVLPPDINRSEIGFTIEGENAIRFGLGAIKGLGEATL 363

Query: 851 RHIMEASA 858
             I+E   
Sbjct: 364 EAIIEERK 371


>gi|210608497|ref|ZP_03287873.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787]
 gi|210152988|gb|EEA83994.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787]
          Length = 1269

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 132/693 (19%), Positives = 236/693 (34%), Gaps = 120/693 (17%)

Query: 83   LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
               TN            ++L     G   L  L+S  +L     +  RI  S       E
Sbjct: 632  FGATNPDAVKKMPTYHAIILAKNDVGRVNLYRLISLSHLT-YYARRPRIPKSEFNRY-RE 689

Query: 143  GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH---------RGYD 193
            GL++ +   +G + +A   N S     RL+ F      +   N Q           R  +
Sbjct: 690  GLLIGSACEAGELYQAVLNNKSDETIARLVEFYDYLEIQPLGNNQFMVDSPKYSQIRSDE 749

Query: 194  RYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
              +    ++V+L      P+VAT +  FL  ED     +   +         D     P 
Sbjct: 750  DLKDINRKIVKLGEEFHKPVVATCDVHFLDAEDEVYRRI---IMTGKGFGDAD---SQPP 803

Query: 252  HYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             YL+   EM+  F+ L   +A E  +E   + S +++  +P+ P     +C  + ++ + 
Sbjct: 804  LYLRTTEEMMEEFAYLGSKKAHEVVIENTVKISDMIEKISPVRP----DKCPPVIEDSDQ 859

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR+   +                 +   +RL+ ELN I    F+  ++I    +  + +
Sbjct: 860  MLRDICYSKAHSMYGD------PLPEIVVERLERELNSIISNGFAVMYIIAQKLVWKSVE 913

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------ 399
            +   VG  RGS   S  A    IT+++PL                               
Sbjct: 914  DGYLVG-SRGSVGSSFAATMAGITEVNPLSPHYYCPNCFYSDFESEEVRAYAGGCGYDMP 972

Query: 400  ---------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                           F + FE FL       PD D++F  D +    +Y +  +G  +  
Sbjct: 973  DKLCPNCGKPLVKDGFDIPFETFLGFKGNKEPDIDLNFSGDYQSNAHKYTEVIFGEGQTY 1032

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G+L  K A   V    +  + Q  R C                            
Sbjct: 1033 RAGTIGTLADKTAYGFVKNYYE-EHGQGKRKC---------------------------- 1063

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFN 559
               ++R+L   Q   G+ R    H  GI++    + ++   P+         D+  T F+
Sbjct: 1064 --EIERIL---QGCTGIRRSTGQHPGGIIVLPLGQDINSFTPVQHPANDMTTDIVTTHFD 1118

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTL 618
               I+   L+K D LG    T+++   + + Q  G     + IP DD     L     +L
Sbjct: 1119 YHSIDH-NLLKLDILGHDDPTIIKMLEELVEQLTGKPFKATDIPLDDQGVMKLFRDTSSL 1177

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPL 677
            GI   +  G      G+     + +I +V   +P  + +++  +   +G +  + +   L
Sbjct: 1178 GITPDDIGGCPVGCLGIPEFGTDFVIQMVVDTKPKTLSDLIRISGLSHGTDVWLNNAQEL 1237

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            I          I  ++ +M       G    E 
Sbjct: 1238 IKSGKATISTAICTRDDIMTYLIN-KGMDSEEF 1269



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
           V L  H+  S ++G   +N I+ +      PAIAITD   + +  + 
Sbjct: 367 VELHCHTKMSDMDGVSDVNKIVKRAHDWGHPAIAITDHGVVQAFPDA 413


>gi|294155324|ref|YP_003559708.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli
            MP145]
 gi|291600469|gb|ADE19965.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli
            MP145]
          Length = 1447

 Score =  338 bits (867), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 155/911 (17%), Positives = 305/911 (33%), Gaps = 195/911 (21%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + ++    +G + L   VS + L ++     +I    ++   ++ +++ +   +G +  
Sbjct: 609  DVSVIALNQKGLKELFNFVS-LSLTERMYNQPKIFFEDIKR--SKNILVGSSTLNGLVIN 665

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRL-----YVNLQRHRGYD-RYRESQVVQLAYTHELPL 211
            A FF +       +  F  +    L     ++     +  D +     +V+ A   +  +
Sbjct: 666  ALFFKNDTELRNYIEKFDYIEIPCLSNFKHWIEYGDFKEEDIKNALKYLVKTAKEMKKIV 725

Query: 212  VATNNSLFLSEEDYEAHDVLMAV------AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
            VA  +  +++E +  A+ +L+         H     ++      P+ +     +M+  FS
Sbjct: 726  VAVGDVRYINETEKTAYSLLVYAKAIGGDRHYLFDYKRKHDLKLPERFYLTTEQMIEEFS 785

Query: 266  DLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
             L +  A E  VE     +  +     I       + DD   + ++ +   A      +L
Sbjct: 786  FLEDKLAYEIVVENTNLITDKINEIEVIKKDLYTPKFDDSPTKLKDLVYKTAREKYGEKL 845

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                       +    R+  E+N I +  +   + I    ++ +  N   VG  RGS   
Sbjct: 846  ----------PEIVENRIKKEINPILKYGYDVIYWISHKLVKKSIDNGYLVG-SRGSVGS 894

Query: 384  SVTAYALTITDIDPLRFS-----------------------------------------L 402
            S+ A    IT+++PL                                            +
Sbjct: 895  SLVATLSGITEVNPLPPHFVCPKCKKFELIDNLKISSGFDLDDKECEKCKITMDKDGQTI 954

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL  +   +PD D++F  D + E+   ++  +G     +  T  +  +K +   + 
Sbjct: 955  PFETFLGFEADKVPDIDLNFSGDYQGEIHNEIRRLFGENHTFRAGTIATAASKTSYGYIK 1014

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             A       +D   K I +     ++                             +EG+ 
Sbjct: 1015 NA-------LDESGKKISSTFVDYLT---------------------------SIIEGVK 1040

Query: 523  RHASTHAAGIVIGDRP--LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H  GI+I  +   +    P+     DV SD   T F+   I    ++K D LG  
Sbjct: 1041 RGTGQHPGGIIIIPKEYSVEDFTPINFPGNDVESDWKTTHFDFHAIHD-NVLKLDILGHD 1099

Query: 578  TLTLLQKSLDFLA---------QRGVKVDLSLIP--FDDHETYHLLTTKGTLGIFQLESS 626
              T ++                +    + +   P     + +       G LGI +  + 
Sbjct: 1100 DPTAIKMLERLTGVDVKKDIPKKDKKVMSIFTSPAALGINSSQIGGEPTGALGIPEFGTP 1159

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
             +R+ LE  +     D+I+L  L       ++ + N +   KEK  +I  +I        
Sbjct: 1160 FVRKMLEQAKAKSFADLISLSGLSHGT---DVWLNNAQSLIKEKGHTIDQVIS------- 1209

Query: 687  GVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
                 ++ +M       + S Y+    + +R+   K I EE ++             + K
Sbjct: 1210 ----CRDDIMVYLIKHGVDSLYAFKIMEQVRKG--KGITEEQEQ------------DLRK 1251

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                  +    K   Y F K+HA AY +++++ AW K + P+E+ A   T   D  + + 
Sbjct: 1252 NKIPQWYIDSMKKIKYMFPKAHATAYVLMAWRIAWFKVYKPLEYYATFFTTRCDVFD-VA 1310

Query: 804  KFCQDARQFNIQIMPPSVNTP-----------------------CVDFKVG--------- 831
              C+D +   I      +N+                           F +          
Sbjct: 1311 NMCEDFKITKINNRIAEINSKPINEISAKEANLIPVLEIARELYARGFTISKISITKSLE 1370

Query: 832  --------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                    +  I    +A+  +G +TA  I +A  +KPF S EDF +R    K      E
Sbjct: 1371 KEWVIDYQNKTIIPPFSALDSLGDSTAYSITQARKEKPFISKEDFANRTSVSKTQYAEFE 1430

Query: 884  SLVFAGALDCF 894
                 G     
Sbjct: 1431 ---KLGVFKEL 1438



 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 4/107 (3%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L   S  + ++G L+   +++K       A+A+ D+N++    +F   A  A I+PI+
Sbjct: 329 VELNTKSKMNTMDGILTPIQLINKAKELGHRAVALLDSNSVQGFPDFYNAAKKAKIKPIL 388

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG----YQRLIE 114
           G       Q N  ++N  K         V       G    Y  LIE
Sbjct: 389 GATFSTIPQSNNSVSNFQKDGILKEQEYVCFDIETTGLSPRYHELIE 435


>gi|215447691|ref|ZP_03434443.1| error-prone DNA polymerase [Mycobacterium tuberculosis T85]
          Length = 494

 Score =  338 bits (866), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 120/461 (26%), Positives = 206/461 (44%), Gaps = 28/461 (6%)

Query: 579  LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            L+ L  + D +A+   ++VDL+ +   +   Y +L    ++G+FQ+ES      L  ++P
Sbjct: 1    LSALHYAKDLVAEHKGIEVDLARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKP 60

Query: 638  DCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
                D++  V+L RPGPI       Y  R+NG + ++  HP + P L++T GV ++QEQ+
Sbjct: 61   RVFYDLVVEVALIRPGPIQGGSVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQL 120

Query: 696  MQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELL 753
            MQ+A   +G+S +EAD LRRAM  K+  E M + + RF  G    +G    +   I+E L
Sbjct: 121  MQLAVDCAGFSAAEADQLRRAMGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKL 180

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA++GF +SHA ++A + + +AW K H+P  F AA +  +       +    DAR+  
Sbjct: 181  EAFANFGFPESHALSFASLVFYSAWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHG 240

Query: 814  IQIMPPSVNTPCVDFKVGDNRI--YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
            + +  P VN         +        L A++ +G   A  ++    A+ PF SL D  S
Sbjct: 241  VAVHGPCVNASLAHATCENAGTEVRLGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTS 300

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RV     +   +E+L  AGAL CFG SR           +         T + + +    
Sbjct: 301  RVQL---SVPQVEALATAGALGCFGMSRR----------EALWAAGAAATGRPDRLPGVG 347

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
              +      +      +       +    G     +P    +  L  MG+   E   +  
Sbjct: 348  SSSH-----IPALPGMSELELAAADVWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVS 402

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             G+ + +A  V  +Q+  T +G  + ++   +         
Sbjct: 403  DGDRVLIAGAVTHRQRPATAQG--VTFINLEDETGMVNVLC 441


>gi|323342031|ref|ZP_08082264.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464456|gb|EFY09649.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 1433

 Score =  337 bits (865), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 139/939 (14%), Positives = 307/939 (32%), Gaps = 208/939 (22%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-----------DQ 124
               + D   + N+            ++  T    + L +L++  +             D 
Sbjct: 555  MQTIDDLQSLNNESSFKKLRKSHCTVIAKTQSSIKDLYQLITLSHTKYLAFFGKTSKGDA 614

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRL 182
                 RI    L E   E L++  G ++  +       S +  E+ +  +   ++    L
Sbjct: 615  VMAEPRILRREL-ERFRENLLIGAGCTNSELFEIAMNKSQEALERCVAFYDYVEIMPLDL 673

Query: 183  YVNLQRHRGYDRY-----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            Y  L   +  +         ++++  A     P++A  N  +    +    DV +     
Sbjct: 674  YAPLLESQAIESESRLLDIINRIIATATKLNKPILAVGNVHYNHPSEKVIRDVYIHSQGI 733

Query: 238  -------TVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQV 287
                    + +++ R     P+ + ++ +EM+  F+ L   +A E  V+   +    ++ 
Sbjct: 734  GGSRHPLYIFNEQRRMAFEAPNQHFRSTNEMLDAFAFLGADKAYEYVVKNPVKLLNEIED 793

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
             +P          ++  +  ++ + + A            +      +  + R++ EL  
Sbjct: 794  ISPKKKELFTPHLENSDELLKDIVYHNAHK----------LYGNPLPELVQARIERELKS 843

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------- 400
            I    +   + I    ++ +  +   VG  RGS   S+ A    IT+++PL         
Sbjct: 844  IFGNGYGVIYYISHLLVKKSLDDGYLVG-SRGSVGSSLVATMAEITEVNPLAPHYVCDNC 902

Query: 401  ----------------------------------SLLFERFLNPDRMSMPDFDIDFCQDR 426
                                               + FE FL  +   +PD D++F  D 
Sbjct: 903  HYNEFFLNGEYSSGFDLDPKDCPNCGKALHCEGQDIPFETFLGFEGDKVPDIDLNFSGDY 962

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            ++    Y +  +G E V +  T  ++  K A   V     + Y +   +         + 
Sbjct: 963  QEFAHAYTKEIFGEEYVYRAGTISTVAQKTAFGYV-----LGYHESMNITNSNNAWNTY- 1016

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVP 544
                                       ++   EG+ R    H  GI++      +    P
Sbjct: 1017 ---------------------------LAIGAEGVKRTTGQHPGGIIVVPDYMDVHDFTP 1049

Query: 545  MY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            +     +  S    T F    I+   ++K D LG    T ++            VD+  +
Sbjct: 1050 IQYPANNPDSTWYTTHFEFHDIDD-NVLKLDILGHVDPTAMKMLERLTG-----VDIHDV 1103

Query: 602  PFDDHETYHLLTTKGTL--------------GIFQLESSGMRQALEGMQPDCIEDIIALV 647
            P +D +T  L  +   L              G+ +  +  +R  LE  +P+   D++ + 
Sbjct: 1104 PMNDKKTLSLFGSTEALDVDERKYHEVTGGLGLPEFGTPFVRGMLEATRPNKFSDLVRIS 1163

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             L     +         +N  E+++      D ++         ++ +M       G   
Sbjct: 1164 GLSHGTDV--------WRNNAEELIKQGLAFDKVIG-------CRDDIMVDLMHY-GLEA 1207

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             EA  +  ++ K          + +I+   +N + +    +  ++      Y F K+HA 
Sbjct: 1208 KEAFTIMESVRKGR-----GLTDEWIASMKRNNVPEWYIDSCLKI-----KYMFPKAHAV 1257

Query: 768  AYAVISYQTAWMKTH----------------YPVEFLAAS----------MTLEMDNVE- 800
            AY +++ + AW K +                Y +E + AS          + + + + + 
Sbjct: 1258 AYVMMAIRVAWFKVYYARAYYAVYFTLRVNAYEIETMCASQEIVASRLNSINMRLKSFDT 1317

Query: 801  ------KIKKFCQ------DARQFNIQIMPPSVNTP-CVDFKVGD---NRIYYSLAAIKG 844
                  K K          + +    ++ P  +      +F +       I      + G
Sbjct: 1318 KKDVTIKEKNLIDTLEVTLELQSRGYKVSPLDLELSKATEFSLDPRDDKAILPPFNVVDG 1377

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            +G   AR +++A  ++PF S +D  +R      + + L+
Sbjct: 1378 LGDNVARQLVKAREEQPFISKKDLMTRGGISSTSVKKLD 1416



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 19/53 (35%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           V   +H+ +S ++G    +  + +      P + ITD   +    +       
Sbjct: 292 VEFHLHTKFSEMDGINDASEYMAQAFEWGHPGMIITDHTGVQGFPKAYGNLKK 344


>gi|182418219|ref|ZP_02949519.1| DNA polymerase III subunit alpha [Clostridium butyricum 5521]
 gi|237666115|ref|ZP_04526102.1| DNA polymerase III subunit alpha [Clostridium butyricum E4 str. BoNT
            E BL5262]
 gi|182378037|gb|EDT75577.1| DNA polymerase III subunit alpha [Clostridium butyricum 5521]
 gi|237658205|gb|EEP55758.1| DNA polymerase III subunit alpha [Clostridium butyricum E4 str. BoNT
            E BL5262]
          Length = 496

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 109/374 (29%), Positives = 181/374 (48%), Gaps = 36/374 (9%)

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG-----------ASKNGISKT 744
            M+I + L+GYS+  +D++RRAM KK  + M+++++ FI G             +NGIS+ 
Sbjct: 1    MEIVRKLAGYSMGRSDMVRRAMSKKKHKVMEEERKNFIHGIIENDEVVVPGCIRNGISEN 60

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +A  IF+ +  FA Y FNKSHAAAYAV+ YQTA++  +YPVE +AA +   M   EK+  
Sbjct: 61   VANKIFDNMMDFASYAFNKSHAAAYAVVGYQTAYLMRYYPVEMIAAMLNSIMGTSEKVAH 120

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFD 863
            +   A    IQ++PP +N     F V  + I + +AAIK VG      I++A  +   F+
Sbjct: 121  YINFAESLGIQVLPPDINESYSRFTVKGDTIRFGMAAIKNVGANVVDSIVKARENKGKFE 180

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            SL DF +++D   +N+R +E L+ AGALD F   R ++L   + +       +K   +  
Sbjct: 181  SLVDFINKMDVSTINKRAVECLIKAGALDNFNVYRSKMLAVHEKLIDSISSDKKRNIDGQ 240

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK-- 981
             ++F   +   + +++       +       E+ + G Y +GHPLD Y   L+       
Sbjct: 241  ISLFGATEELKNPEVSYPNIKEFDKRNLLAMEKEMTGLYITGHPLDDYAKSLKMQTTIEI 300

Query: 982  --------GYEESVA--------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
                      +E +                   + + L  ++ S  QK TR  + + ++T
Sbjct: 301  AKIFSVHETLDEVLEENIPDVNIFEGKNILKDNDRVVLGGILASVNQKVTRNNTIMAFLT 360

Query: 1020 FSEPAKEYEANFFP 1033
              +     E   FP
Sbjct: 361  LEDLTGSIEVIVFP 374


>gi|167470458|ref|ZP_02335162.1| DNA polymerase III, alpha subunit [Yersinia pestis FV-1]
          Length = 353

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 118/355 (33%), Positives = 179/355 (50%), Gaps = 21/355 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 15  PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 74

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 75  PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 124

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I   WL +   EGLI+L+GG  G + +     +    ++ L  +++ F D  Y+ L R
Sbjct: 125 PIIDRDWLIK-HKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYLELIR 183

Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
               D        V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP 
Sbjct: 184 TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 243

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++    LP+F   E       
Sbjct: 244 NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEM-----S 298

Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E+ L  KA  GLE RL         +     +Y +RLD EL VI +M F GYFL
Sbjct: 299 TEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELQVINQMGFPGYFL 353


>gi|289759527|ref|ZP_06518905.1| DNA polymerase subunit III (alpha) dnaE2 [Mycobacterium tuberculosis
            T85]
 gi|289715091|gb|EFD79103.1| DNA polymerase subunit III (alpha) dnaE2 [Mycobacterium tuberculosis
            T85]
          Length = 491

 Score =  334 bits (856), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 118/458 (25%), Positives = 204/458 (44%), Gaps = 28/458 (6%)

Query: 582  LQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  + D +A+   ++VDL+ +   +   Y +L    ++G+FQ+ES      L  ++P   
Sbjct: 1    MHYAKDLVAEHKGIEVDLARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVF 60

Query: 641  EDIIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
             D++  V+L RPGPI       Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+
Sbjct: 61   YDLVVEVALIRPGPIQGGSVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQL 120

Query: 699  AQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKF 756
            A   +G+S +EAD LRRAM  K+  E M + + RF  G    +G    +   I+E L  F
Sbjct: 121  AVDCAGFSAAEADQLRRAMGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAF 180

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A++GF +SHA ++A + + +AW K H+P  F AA +  +       +    DAR+  + +
Sbjct: 181  ANFGFPESHALSFASLVFYSAWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAV 240

Query: 817  MPPSVNTPCVDFKVGDNRI--YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
              P VN         +        L A++ +G   A  ++    A+ PF SL D  SRV 
Sbjct: 241  HGPCVNASLAHATCENAGTEVRLGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRVQ 300

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
                +   +E+L  AGAL CFG SR           +         T + + +      +
Sbjct: 301  L---SVPQVEALATAGALGCFGMSRR----------EALWAAGAAATGRPDRLPGVGSSS 347

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
                  +      +       +    G     +P    +  L  MG+   E   +   G+
Sbjct: 348  H-----IPALPGMSELELAAADVWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGD 402

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             + +A  V  +Q+  T +G  + ++   +         
Sbjct: 403  RVLIAGAVTHRQRPATAQG--VTFINLEDETGMVNVLC 438


>gi|197294585|ref|YP_001799126.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
            australiense]
 gi|171853912|emb|CAM11875.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
            australiense]
          Length = 1530

 Score =  333 bits (854), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 159/962 (16%), Positives = 326/962 (33%), Gaps = 214/962 (22%)

Query: 83   LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
              + +     +     I +LV+  +GY+ L EL+S   L D   +  R+  S L +   E
Sbjct: 630  FDLKDPIDPKYERSYHINILVANQKGYRNLFELLSAA-LTDGFYKKPRVLKSSLSK-HRE 687

Query: 143  GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGY--DRYRES 198
            GL++ +G     I      ++ +   K +  +   ++   + Y +L    G   ++   S
Sbjct: 688  GLLVGSGCYDSNIFEIALNSNIEKLRKAISFYDYIEIQPPQAYKHLISQLGDKGEKIIHS 747

Query: 199  QVVQL---AYTHELPLVATNNSLFLSEEDYEAHDVLMA---VAHSTVVSQKDRPRVTPDH 252
             ++++          ++AT +  ++   + +   + +    V        K      P++
Sbjct: 748  TLIKIIEETKKQNKIIIATGDVHYIHPWEKDYRQIYIKAKQVGGGLHKLSKYGDCNLPNN 807

Query: 253  YLKNRSEMVSIFSDL-------PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +L    EM+  F+ L          ++NT  +  +   I      +     +   D +  
Sbjct: 808  HLLTTQEMLEAFNFLQNDYLSREIIIDNTHLLNSKIEKIQPFTKELFSLKDDAFKDILNI 867

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA--------RMKFSGYF 357
                    K +  L  +  Q       H     +RL  ELN I             +  +
Sbjct: 868  PS----IKKEIQSLVQKKVQKLYGPNPHP-LIDKRLKQELNSIIGDVNDATSNQDIAPIY 922

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF------------- 404
             +    ++ + ++   VG  RGS   S+ A  L IT+++PLR                  
Sbjct: 923  YLSHLLVKKSLEDGYLVG-SRGSIGSSLVATMLDITEVNPLRPHYRCPNCCYTIIKTKPE 981

Query: 405  --ERFLNPDRMSMPDF-------------------------------------------- 418
              E++ + +  S  D                                             
Sbjct: 982  EKEKYYSLEEQSYYDALGKVFSGYDLENKKCPKCQSPLEKDGHDIPFETFLGFEGNKTPD 1041

Query: 419  -DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  D + +   Y++N  G +   +  T  ++  + A   V                
Sbjct: 1042 IDLNFAGDYQIKAHNYIKNLIGEKHAFRAGTIQTIAKRNAYGYV---------------- 1085

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD- 536
                                F E+   +    ++ +I+ K+EG+ R    H  GIVI   
Sbjct: 1086 ------------------KGFVESANKNWRKQKISQITTKIEGVKRSTGQHPGGIVIVPP 1127

Query: 537  -RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
             R + ++ P+     D  S+   T F+    E   L K D LG     +++  +D + + 
Sbjct: 1128 NRSIYEITPIQFPANDTNSEWKTTHFDYHSFEN-NLFKLDILGHDDPMMIKFLMDCVKKN 1186

Query: 593  GVKVDLS---LIPFDDHETYHLLTTK-------------GTLGIFQLESSGMRQALEGMQ 636
              K        IP DD E Y L +                +LGI +  ++ ++Q L+ ++
Sbjct: 1187 PNKFAFKKAQEIPLDDPEVYKLFSEDMKITSAQNETITIDSLGIPEFGTTFVKQMLKDIK 1246

Query: 637  PD-----CIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             +        D++ +  L     +   N      +    EK  + +   D ++       
Sbjct: 1247 KNHKKNINFADLVKISGLSHGTDVWLKNAKDVIGQTGDFEKYKNQNISFDDIIG------ 1300

Query: 690  IYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
              ++ +M   Q   + +  +    + +R+   +   +     K             +   
Sbjct: 1301 -CRDDIMLQLQDKGVDALKAFEIMEFIRKGQPQNDPKTWQDYKNLM----------EGKV 1349

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------ 800
             N +   A+   Y F K+HA AY +++ + AW K + P+ F +   +   +  +      
Sbjct: 1350 ENWYIDSAEKIKYLFPKAHATAYVIMALRIAWFKVYAPLIFYSGYFSKRAEQFDHQIMIS 1409

Query: 801  --------KIK------------------KFCQDARQFNIQIMPPSVNTPCVD-FKVGDN 833
                    KI                   +  ++  Q   + +    N   +D FK+ ++
Sbjct: 1410 NDPEIIQNKINNLKKNEIKAKEAVLINTLQIAKEMLQRGFKFLSVDFNKSDIDVFKIEND 1469

Query: 834  RI-YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
                  L  I G+G   A+ I++   DKPF   EDF +R    ++N+++ E ++    L+
Sbjct: 1470 NYLRMPLLCIDGLGMIAAKKIIKTREDKPFTQ-EDFRTR---SRVNKKIFEQIIKENLLE 1525

Query: 893  CF 894
              
Sbjct: 1526 SL 1527



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 38/88 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +    H+  S L+   S    L    +    AIA TD + ++S  E  + +    I+PI 
Sbjct: 358 IEFHTHTKMSNLDAINSAKEYLKIAESWGHEAIAFTDHDGIYSYPEIYEYSKGKKIKPIY 417

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
           G ++D   +  + +TNQ +       ++
Sbjct: 418 GLEIDFIQERPIYITNQIEDNLTQDFNL 445


>gi|308190354|ref|YP_003923285.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER]
 gi|307625096|gb|ADN69401.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER]
          Length = 1461

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 149/903 (16%), Positives = 297/903 (32%), Gaps = 186/903 (20%)

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
                EG +     ++     +      +  +  L    +E L++ +G     +   +F++
Sbjct: 625  AKNYEGLKEQYGYLTTALTKNLYNG-PKTFMEDLA-AHSENLLLGSGTLKSRLLDVYFYS 682

Query: 163  SSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATN 215
            S +   K L  +        ++F   +          +     ++++ A   +  +VAT 
Sbjct: 683  SHEEFIKELKLYDYIEVPAPQVFSHWIDNEFITQEQLE-ISLKEIIKEAIKAKKIVVATA 741

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQ--------KDRPRVTPDHYLKNRSEMVSIFSDL 267
            +  +L+  D  A++VL+                  K+     P+       EM+  F+ L
Sbjct: 742  DVKYLNLYDKVAYEVLVYAKGIKNSRHYLFNYEQAKNGNIPIPNQDYLTTEEMLEQFAFL 801

Query: 268  PE-------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
             +        + NT +IA  C         I  +    + +D  K+  + +   A     
Sbjct: 802  KDKQLIEDIVINNTNKIADMC----DKIQVIKDKLYTPKFEDSGKKLHDLVYETAYKKYG 857

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
             +L           +   +R++ ELN I    FS  + I    IQ +  N   VG  RGS
Sbjct: 858  EKL----------PKIVEERIEAELNPIIDYGFSVIYWISHILIQKSTDNGFVVG-SRGS 906

Query: 381  GAGSVTAYALTITDIDPLRFSLL------------------------------------- 403
               S  A    IT+++PL    L                                     
Sbjct: 907  VGSSFVATLAGITEVNPLPPHYLCNKCKYFELSKDEKITSGYDLPNKNCPKCNILLEADG 966

Query: 404  ----FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
                FE FL      +PD D++F  D + ++   V+  +G+    +  T  ++  K +  
Sbjct: 967  QGIPFETFLGFKADKVPDIDLNFSGDIQGDIHNEVKRIFGNTHTLKAGTISTVALKTSYG 1026

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V                            +A  +++       ++P +D L   + K+E
Sbjct: 1027 HV----------------------------KAFTEEA---MRNYSEPFIDFL---AHKIE 1052

Query: 520  GLYRHASTHAAGIVIGDR--PLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
             L R    H  GI+I  +   +    P+     +  S    + F+   I    ++K D L
Sbjct: 1053 KLKRTTGQHPGGILIIPKEFDVYDFTPINYPANEPDSSWLTSHFDFHSIHD-NILKLDLL 1111

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            G    T+++     L ++   +++  IP +D +   L  +   + I   + +       G
Sbjct: 1112 GHDNPTIIR-----LLKKYTNINIDDIPKNDPKVLSLFASTKAMNIKPEQINNETTGALG 1166

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQE 693
            +       +  ++   +P    N++      +G+   + +   L+     E   VI  ++
Sbjct: 1167 LPEFGTSFVRQMLKEAKPKSFANLISLAGLSHGENVWLNNAQELVSKKNFEITDVICCRD 1226

Query: 694  QVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
             +MQ     ++   ++ +  + +R+  G    E              K      +A  + 
Sbjct: 1227 DIMQFLLKKKVEPLFAFNIMEKVRKGKGLTDDE-------------VKRLKEYKVADWMI 1273

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS------------------- 791
            E + K   Y F K+HA AY ++++  AW K +YP+   A                     
Sbjct: 1274 ESMKKI-KYMFPKAHATAYVLMAWWIAWFKLYYPLAHYACYFATHAKAVEIESMIDIKGG 1332

Query: 792  ---------MTLEMDNVEKIK--------KFCQDARQFNIQIMPPSVNTPCVDFKV---G 831
                     +     N  K+K        +  Q+       I    +        +    
Sbjct: 1333 HKVTDRLNQLNNIPKNERKVKDDDLIPVFEIAQELYARGFYIANIDLKKSAAHEWIIDNK 1392

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               +     +I G+G   A  ++EA   K F S ED   R      N+ ++E +      
Sbjct: 1393 HGCLIPPFKSIDGLGDAAAVSLVEARDAKDFTSKEDVIRRTSV---NKTLIEKMDKLNIF 1449

Query: 892  DCF 894
               
Sbjct: 1450 KGL 1452



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 31/74 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L V S  + ++G +   +I+         A+AI D +      EF   A  + ++P+ 
Sbjct: 339 VELHVSSKMNTMDGLIFPKDIVAFAEKLNHSAVAIMDVDGAQGYPEFYNAAKKSKVKPLF 398

Query: 72  GCQLDIDMQDNLKM 85
           G    +  + N  +
Sbjct: 399 GTAFSVINKSNKSI 412


>gi|319777750|ref|YP_004137401.1| DNA polymerase iii alpha subunit [Mycoplasma fermentans M64]
 gi|318038825|gb|ADV35024.1| DNA polymerase III alpha subunit [Mycoplasma fermentans M64]
          Length = 1461

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 149/903 (16%), Positives = 297/903 (32%), Gaps = 186/903 (20%)

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
                EG +     ++     +      +  +  L    +E L++ +G     +   +F++
Sbjct: 625  AKNYEGLKEQYGYLTTALTKNLYNG-PKTFMEDLA-AHSENLLLGSGTLKSRLLDVYFYS 682

Query: 163  SSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATN 215
            S +   K L  +        ++F   +          +     ++++ A   +  +VAT 
Sbjct: 683  SHEEFIKELKLYDYIEVPAPQVFSHWIDNEFITQEQLE-ISLKEIIKEAIKAKKIVVATA 741

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQ--------KDRPRVTPDHYLKNRSEMVSIFSDL 267
            +  +L+  D  A++VL+                  K+     P+       EM+  F+ L
Sbjct: 742  DVKYLNLYDKVAYEVLVYAKGIKNSRHYLFNYEQAKNGNIPIPNQDYLTTEEMLEQFAFL 801

Query: 268  PE-------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
             +        + NT +IA  C         I  +    + +D  K+  + +   A     
Sbjct: 802  KDKQLIEDIVINNTNKIADMC----DKIQVIKDKLYTPKFEDSGKKLHDLVYETAYKKYG 857

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
             +L           +   +R++ ELN I    FS  + I    IQ +  N   VG  RGS
Sbjct: 858  EKL----------PKIVEERIEAELNPIIDYGFSVIYWISHILIQKSTDNGFVVG-SRGS 906

Query: 381  GAGSVTAYALTITDIDPLRFSLL------------------------------------- 403
               S  A    IT+++PL    L                                     
Sbjct: 907  VGSSFVATLAGITEVNPLPPHYLCNKCKYFELSKDEKITSGYDLPNKNCPKCNILLEADG 966

Query: 404  ----FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
                FE FL      +PD D++F  D + ++   V+  +G+    +  T  ++  K +  
Sbjct: 967  QGIPFETFLGFKADKVPDIDLNFSGDIQGDIHNEVKRIFGNTHTLKAGTISTVALKTSYG 1026

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V                            +A  +++       ++P +D L   + K+E
Sbjct: 1027 HV----------------------------KAFTEEA---MRNYSEPFIDFL---AHKIE 1052

Query: 520  GLYRHASTHAAGIVIGDR--PLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
             L R    H  GI+I  +   +    P+     +  S    + F+   I    ++K D L
Sbjct: 1053 KLKRTTGQHPGGILIIPKEFDVYDFTPINYPANEPDSSWLTSHFDFHSIHD-NILKLDLL 1111

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            G    T+++     L ++   +++  IP +D +   L  +   + I   + +       G
Sbjct: 1112 GHDNPTIIR-----LLKKYTNINIDDIPKNDPKVLSLFASTKAMNIKPEQINNETTGALG 1166

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQE 693
            +       +  ++   +P    N++      +G+   + +   L+     E   VI  ++
Sbjct: 1167 LPEFGTSFVRQMLKEAKPKSFANLISLAGLSHGENVWLNNAQELVSKKNFEITDVICCRD 1226

Query: 694  QVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
             +MQ     ++   ++ +  + +R+  G    E              K      +A  + 
Sbjct: 1227 DIMQFLLKKKVEPLFAFNIMEKVRKGKGLTDDE-------------VKRLKEYKVADWMI 1273

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS------------------- 791
            E + K   Y F K+HA AY ++++  AW K +YP+   A                     
Sbjct: 1274 ESMKKI-KYMFPKAHATAYVLMAWWIAWFKLYYPLAHYACYFATHAKAVEIESMIDIKGG 1332

Query: 792  ---------MTLEMDNVEKIK--------KFCQDARQFNIQIMPPSVNTPCVDFKV---G 831
                     +     N  K+K        +  Q+       I    +        +    
Sbjct: 1333 HKVTDRLNQLNNIPKNERKVKDDDLIPVFEIAQELYARGFYIANIDLKKSAAHEWIIDNK 1392

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               +     +I G+G   A  ++EA   K F S ED   R      N+ ++E +      
Sbjct: 1393 HGCLIPPFKSIDGLGDAAAVSLVEARDAKDFTSKEDVIRRTSV---NKTLIEKMDKLNIF 1449

Query: 892  DCF 894
               
Sbjct: 1450 KGL 1452



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 31/74 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L V S  + ++G +   +I+         A+AI D +      EF   A  + ++P+ 
Sbjct: 339 VELHVSSKMNTMDGLIFPKDIVAFAEKLNHSAVAIMDVDGAQGYPEFYNAAKKSKVKPLF 398

Query: 72  GCQLDIDMQDNLKM 85
           G    +  + N  +
Sbjct: 399 GTAFSVINKSNKSI 412


>gi|258539579|ref|YP_003174078.1| DNA polymerase III subunit alpha [Lactobacillus rhamnosus Lc 705]
 gi|257151255|emb|CAR90227.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus Lc 705]
          Length = 433

 Score =  331 bits (850), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 104/345 (30%), Positives = 174/345 (50%), Gaps = 14/345 (4%)

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    +  ++++FI GA K G  +  A  
Sbjct: 1    MVYQEQVMQVANVMGGFSLGEADLLRRAMSKKKSSVLAAEQDKFIEGALKQGFPEATAKT 60

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++  + +FA+YGFN+SHA AY+ +++  A++K HYP  F AA M   M+N+ K++ + Q+
Sbjct: 61   VYAYIDRFANYGFNRSHAVAYSKVAFWLAYLKVHYPAAFFAALMNASMNNLPKLRTYVQE 120

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
            A+   + ++ P +N     FK+   +I + L +IKG+       I  A  + PF  L D 
Sbjct: 121  AKARKVGLLGPDINQSNGGFKLSQGKIRFGLLSIKGMRRDFVEAIFAARKNGPFKDLRDL 180

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              R+D K L     ++   AGA D F  +R Q L +LD +    +    +       +F+
Sbjct: 181  LQRLDPKWLKTDYYKAPTLAGAFDQFSNNRAQTLANLDELINSVKLAGND-----VGLFS 235

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
                         +     +S R E E  VLG Y SGHP+D Y P+  +  +    +   
Sbjct: 236  MLAPKTI------EVPEMPASERLEAEAEVLGVYLSGHPVDKYAPLKTQYRLINVSDL-- 287

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               G  + +  +V   ++ +T+ G  + ++   +         FP
Sbjct: 288  -EEGRAVDILLLVRHIKRIRTKTGKPMAFIDGQDATGNVSLTIFP 331


>gi|163783832|ref|ZP_02178813.1| DNA polymerase III alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880903|gb|EDP74426.1| DNA polymerase III alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 432

 Score =  331 bits (850), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 108/343 (31%), Positives = 186/343 (54%), Gaps = 7/343 (2%)

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M +A +LSG++++EAD LR+A+GKK  + M K K+RFI+GA + G SK     +++ + K
Sbjct: 1    MFMANILSGFTMAEADTLRKAIGKKKADVMAKMKDRFINGAVEKGFSKEKISQLWDDIEK 60

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSH+ AYA ++Y TA++KT+YP EF A  +T E ++ +K      D + F I+
Sbjct: 61   FASYSFNKSHSTAYAYLTYWTAYIKTYYPEEFFAVKLTTEKND-DKFLNILNDMKDFGIE 119

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
            ++PP +N    +F +    +I + LA IK VG ++A+ I+E    +  +  + D   R+D
Sbjct: 120  LLPPHINKSLSEFAIEEKGKIRFGLARIKNVGESSAKAIVEERIKNGEYHDIFDIAERLD 179

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            SK +N+RVLE+L+ AGA D     R  +L ++D      Q   +++ +   ++       
Sbjct: 180  SKNMNKRVLEALIKAGAFDFTEVDRGVMLHNIDKALTSGQKQRQSKLSGQNSLLGLMMKP 239

Query: 934  FSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
               K   ++           + + E+ VLGFY SGHPL  Y+  L+   +      +   
Sbjct: 240  EETKTAVLSYNDAPHLTEREKLDYEKEVLGFYISGHPLKAYQKELKG-RVLPIASLITRK 298

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + +++A ++ + ++KKTR G+ +      +     +   FP
Sbjct: 299  SRDRVKVAGVISNVKKKKTRSGNTMAVFQLQDETGIMDVRAFP 341


>gi|239618295|ref|YP_002941617.1| DNA-directed DNA polymerase [Kosmotoga olearia TBF 19.5.1]
 gi|239507126|gb|ACR80613.1| DNA-directed DNA polymerase [Kosmotoga olearia TBF 19.5.1]
          Length = 914

 Score =  330 bits (845), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 175/666 (26%), Positives = 302/666 (45%), Gaps = 70/666 (10%)

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                ELR  A+ GL+          G   + Y +RLD EL ++    F  YFL++A+ +
Sbjct: 181 HTTIEELRALAIEGLKE--------AGITDKKYLERLDKELKIVQDKGFQDYFLLIAEIV 232

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           + AK     VGPGRGS  GS+   AL IT +DPL++ L FERFLNP R   PD D+D   
Sbjct: 233 KLAKSIGCWVGPGRGSAVGSLLVRALGITAVDPLKYDLYFERFLNPAREDFPDIDLDVED 292

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           ++R E+I  +   +  E+V  I T G+   ++A R + R +++  S++  L     N   
Sbjct: 293 EKRPELIHKITEHFSSEKVCLIQTMGTFSFRSAARALARKMKVSESEIRNLISWSRNGKF 352

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            P SL               D  +  + + + +L GLY   S HAAGI++ +  L  ++P
Sbjct: 353 LPSSLS-------------KDKRMTSIFKFANQLSGLYSTLSVHAAGIILSEEDLRTIIP 399

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
           + +    ++ ++Q++MK +E  G  K D LGL+ L+LL+K  +         +      D
Sbjct: 400 LRK--SDEIYISQWDMKSLEYLGFQKVDLLGLRNLSLLRKLCE-------GKEPWNKNPD 450

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
           + +++ +L+   T GIFQ+E +     ++ + P+ +ED+   ++L RPGPI + +   Y 
Sbjct: 451 NRKSFAILSRGYTTGIFQIEGNEATAIIKKISPENLEDLAIGIALNRPGPISSGITREYI 510

Query: 663 NRKNGKEKIVSIHPLIDPML--KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            R+   + I +     + +   ++T G++I+QEQV+++A         E ++LRRA+ KK
Sbjct: 511 RRRRFLKAIGNYTAG-EHIASLEDTLGLLIFQEQVIRLAISELKLKPEEGELLRRALSKK 569

Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             E ++K  E     + +N           E L  F+ Y FNKSH+ AY+++SY  A+ K
Sbjct: 570 DTETIEKLAEVVQERSPENS---EKISKYLEFLRDFSGYSFNKSHSIAYSLLSYWIAYHK 626

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSL 839
            + PV F    + L   +     +   +AR+  ++      N    +  +        SL
Sbjct: 627 ANNPVLFYKLLIPL--MDSGSRLRAAAEARELGLKFSI--FNPGNRNNIILVPGDFRPSL 682

Query: 840 AAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             I         +       ++ + +  D              LE L+  G  D +G SR
Sbjct: 683 TKIDTSKPPKEENFFAYVRKNRNYLTAAD--------------LEFLIKTGFFDQYG-SR 727

Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
           ++LL+ ++N             +  +         F  K       +E+   +   E   
Sbjct: 728 IKLLKDINNAL-----------SGVDPDLKSVLKVFGYKEEEITEEMESLVEKAAMEFET 776

Query: 959 LGFYFS 964
            GF  +
Sbjct: 777 FGFNLT 782


>gi|238810189|dbj|BAH69979.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 1467

 Score =  329 bits (844), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 148/903 (16%), Positives = 296/903 (32%), Gaps = 186/903 (20%)

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
                EG +     ++     +      +  +  L    +E L++ +G     +   +F++
Sbjct: 631  AKNYEGLKEQYGYLTTALTKNLYNG-PKTFMEDLA-AHSENLLLGSGTLKSRLLDVYFYS 688

Query: 163  SSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATN 215
            S +   K L  +        ++F   +          +     ++++ A   +  +VAT 
Sbjct: 689  SHEEFIKELKLYDYIEVPAPQVFSHWIDNEFITQEQLE-ISLKEIIKEAIKAKKIVVATA 747

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQ--------KDRPRVTPDHYLKNRSEMVSIFSDL 267
            +  +L+  D  A++VL+                  K+     P+       EM+  F+ L
Sbjct: 748  DVKYLNLYDKVAYEVLVYAKGIKNSRHYLFNYEQAKNGNIPIPNQDYLTTEEMLEQFAFL 807

Query: 268  PE-------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
             +        + NT +IA  C         I  +    + +D  K+  + +   A     
Sbjct: 808  KDKQLIEDIVINNTNKIADMC----DKIQVIKDKLYTPKFEDSGKKLHDLVYETAYKKYG 863

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
             +L           +   +R++ ELN I    FS  + I    IQ +  N   VG  RGS
Sbjct: 864  EKL----------PKIVEERIEAELNPIIDYGFSVIYWISHILIQKSTDNGFVVG-SRGS 912

Query: 381  GAGSVTAYALTITDIDPLRFSLL------------------------------------- 403
               S  A    IT+++PL    L                                     
Sbjct: 913  VGSSFVATLAGITEVNPLPPHYLCNKCKYFELSKDEKITSGYDLPNKNCPKCNILLEADG 972

Query: 404  ----FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
                FE FL      +PD D++F  D + ++   V+  + +    +  T  ++  K +  
Sbjct: 973  QGIPFETFLGFKADKVPDIDLNFSGDIQGDIHNEVKRIFDNTHTLKAGTISTVALKTSYG 1032

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V                            +A  +++       ++P +D L   + K+E
Sbjct: 1033 HV----------------------------KAFTEEA---MRNYSEPFIDFL---AHKIE 1058

Query: 520  GLYRHASTHAAGIVIGDR--PLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
             L R    H  GI+I  +   +    P+     +  S    + F+   I    ++K D L
Sbjct: 1059 KLKRTTGQHPGGILIIPKEFDVYDFTPINYPANEPDSSWLTSHFDFHSIHD-NILKLDLL 1117

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            G    T+++     L ++   +++  IP +D +   L  +   + I   + +       G
Sbjct: 1118 GHDNPTIIR-----LLKKYTNINIDDIPKNDPKVLSLFASTKAMNIKPEQINNETTGALG 1172

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQE 693
            +       +  ++   +P    N++      +G+   ++    L+     E   VI  ++
Sbjct: 1173 LPEFGTSFVRQMLKEAKPKSFANLISLAGLSHGENVWLNNAQELVSKKNFEITDVICCRD 1232

Query: 694  QVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
             +MQ     ++   ++ +  + +R+  G    E              K      +A  + 
Sbjct: 1233 DIMQFLLKKKVEPLFAFNIMEKVRKGKGLTDDE-------------VKRLKEYKVADWMI 1279

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS------------------- 791
            E + K   Y F K+HA AY ++++  AW K +YP+   A                     
Sbjct: 1280 ESMKKI-KYMFPKAHATAYVLMAWWIAWFKLYYPLAHYACYFATHAKAVEIESMIDIKGG 1338

Query: 792  ---------MTLEMDNVEKIK--------KFCQDARQFNIQIMPPSVNTPCVDFKV---G 831
                     +     N  K+K        +  Q+       I    +        +    
Sbjct: 1339 HKVTDRLNQLNNIPKNERKVKDDDLIPVFEIAQELYARGFYIANIDLKKSAAHEWIIDNK 1398

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               +     +I G+G   A  ++EA   K F S ED   R      N+ ++E +      
Sbjct: 1399 HGCLIPPFKSIDGLGDAAAVSLVEARDAKDFTSKEDVIRRTSV---NKTLIEKMDKLNIF 1455

Query: 892  DCF 894
               
Sbjct: 1456 KGL 1458



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 31/74 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L V S  + ++G +   +I+         A+AI D +      EF   A  + ++P+ 
Sbjct: 345 VELHVSSKMNTMDGLIFPKDIVAFAEKLNHSAVAIMDVDGAQGYPEFYNAAKKSKVKPLF 404

Query: 72  GCQLDIDMQDNLKM 85
           G    +  + N  +
Sbjct: 405 GTAFSVINKSNKSI 418


>gi|330900334|gb|EGH31753.1| error-prone DNA polymerase [Pseudomonas syringae pv. japonica str.
            M301072PT]
          Length = 453

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 105/420 (25%), Positives = 175/420 (41%), Gaps = 34/420 (8%)

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPML 682
            S      L  ++P+   D++  V++ RPGPI  D +  Y  R+NG+E +    P ++ + 
Sbjct: 1    SRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRRNGEEAVTYP-PKLESVF 59

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGI 741
            K T GV ++QEQVM++A L + Y+  EAD LRRAM   K    ++  +ER  +G  KNG 
Sbjct: 60   KRTLGVPLFQEQVMEVAILAADYTPGEADELRRAMAAWKRHGGLEPHRERLRTGMLKNGY 119

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
                A  IFE +  F  YGF +SHAA++A+++Y + W+K H P  F  A +         
Sbjct: 120  EADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPAAFTCALINSWPMGFYS 179

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGD---------NRIYYSLAAIKGVGTTTARH 852
              +  QDAR+ +I+I P  V     D  +             I   L  ++      A  
Sbjct: 180  PDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDRTRNLAIRLGLRMVRSFREEDALR 239

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            I  A A +PF    D   R +    + R  E+L  +GAL      R +    +  +    
Sbjct: 240  IEVARAKRPFVDATDLTLRAEL---DSRAAEALADSGALRGLIGHRHRARWEVAGV---- 292

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
                         +F       +  I      +   +     +   LG     HPL + +
Sbjct: 293  --------EAQRPLFDDLPSEETQVI----LPLPTVAEDLVADYTTLGTTLGPHPLALLR 340

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              L     +  ++ +       + +A +V+ +Q+  T  G  + +VT  +         +
Sbjct: 341  RQLAAKRFRSSQDLLHLENDRTLSVAGLVIGRQRPGTASG--VTFVTLEDEFGMVNVVVW 398


>gi|47458892|ref|YP_015754.1| DNA polymerase III PolC [Mycoplasma mobile 163K]
 gi|47458220|gb|AAT27543.1| DNA polymerase III alpha subunit [Mycoplasma mobile 163K]
          Length = 1433

 Score =  327 bits (838), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 144/902 (15%), Positives = 289/902 (32%), Gaps = 180/902 (19%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                I +L     G + L + +S            ++    L E     LI  +G     
Sbjct: 589  RPFEITILAKNQSGLKELFQKISLTSTKQYFNG-PKMFFEDLLEKSKNILI-GSGTLKSL 646

Query: 155  IDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ----VVQLAYTHE 208
            I    F  + +   + L  F   ++   + + +  ++    +    +    +V+ +    
Sbjct: 647  IINEVFRGTRKGLREYLKYFDYVEIIPPKNFSHWIKNEDILKEELLEGLKILVEESKKLN 706

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKN-----RSEMVSI 263
              +VA  +  ++ +++   H++ +       +          +            EM+  
Sbjct: 707  KIVVAVGDVRYVQKDEKILHEIYINAKGLQGIRHPLFKYDQSETDYPTLNYLNTQEMIDQ 766

Query: 264  FSDLPE-------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
            F  L +        ++NT  I+ +    ++V   I       + ++      N LR    
Sbjct: 767  FLFLQDNDLIKEIVVKNTHLISNQIENNIEV---IKKDLFTPKIEN----SANLLRELVY 819

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            A       +         +    R++ ELN I    +   + I    +  + ++   VG 
Sbjct: 820  AKAFEIYGKNL------PELIISRIEKELNPIIEQGYDVIYWISHKIVAKSLEDGYIVG- 872

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSL---------------------------------- 402
             RGS   S+ AY   IT+++PL                                      
Sbjct: 873  SRGSVGSSLVAYLSGITEVNPLPPHYICSNCKDCEFIKNLDITSGYDLPHKNCNNCYKAL 932

Query: 403  -------LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                    FE FL      +PD D++F  + +  V   V+  +G +   +  T      K
Sbjct: 933  KREGQTIPFETFLGFGANKVPDIDLNFSNEYQHIVHDEVRKWFGEDHCFRAGTISKTADK 992

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V     + +++ + L                            ++  +  L   +
Sbjct: 993  TAYGYV-----LAWAEENNLT--------------------------FSNAFIGYL---A 1018

Query: 516  QKLEGLYRHASTHAAGIVIGDRP--LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIK 570
             K+ G  R    H  GI++  +   +    P+     D  S    T F+   I    ++K
Sbjct: 1019 SKIVGTKRTTGQHPGGIIVIPKDFSVEDFTPINFPANDPNSSWKTTHFDFHAIHD-NVLK 1077

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
             D LG    T ++                 IPF+D +   L T+   L I   + SG   
Sbjct: 1078 LDLLGHNDPTAIKFLTSLTNVNVF-----DIPFNDEKVLSLFTSTKALNIKPEDISGEHT 1132

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVI 689
               G        +  ++   +     +++  +   +G +   +    LI     + + +I
Sbjct: 1133 GALGFPEFGTTFVRKMLVSAKAKSFSDLISVSGLSHGTDVWNNNAEDLILKKNLQLKDII 1192

Query: 690  IYQEQVMQIAQLLSG---YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
              ++ +M            +    + +R+  G   +EE              + +S    
Sbjct: 1193 SCRDDIMVFLITKGVNELKAFQIMENVRKGKGLNSEEEQLL---------KAHKVSDWYI 1243

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-KIK-- 803
             ++ ++      Y F K+HAAAY +++++ AW K +YP+EF A+  T   D ++ KI   
Sbjct: 1244 DSLNKI-----KYMFPKAHAAAYVMMAWRIAWFKLYYPLEFYASYFTTRADFIDIKIMSS 1298

Query: 804  -----------------------------------KFCQDARQFNIQIMPPSVNTPCVDF 828
                                               +  ++      +I   S+N      
Sbjct: 1299 TKKTISEKLSDFKRRRNSKGEDKLSAKEQGLITVLEIAEEMYARGFKISKISINKSEATN 1358

Query: 829  KV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL-NRRVLES 884
             +     N +     A+ G+G   A  I+E    KPF S+ED   R    K  N + +E 
Sbjct: 1359 WIIDKESNSLIPPFNAMDGLGVAVAESIIEQRKKKPFISIEDVIERTSVNKTLNEKFIEL 1418

Query: 885  LV 886
             +
Sbjct: 1419 EI 1420



 Score = 53.8 bits (128), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 32/76 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L + ++ S ++G    ++ +         ++AI D +++ S   F      A I+ I 
Sbjct: 313 IELSIRTTMSTMDGFKEADDFVSFAKQLNHESLAIVDIDSVQSFPNFFNAVKKANIKGIY 372

Query: 72  GCQLDIDMQDNLKMTN 87
           G       ++N  + N
Sbjct: 373 GASFSTIFKNNQAIKN 388


>gi|218670743|ref|ZP_03520414.1| DNA polymerase III, alpha subunit [Rhizobium etli GR56]
          Length = 385

 Score =  326 bits (835), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 107/394 (27%), Positives = 183/394 (46%), Gaps = 21/394 (5%)

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
           +D  +  +  L     AG   R  +G  AK         ++++EL++I +  ++ YFL V
Sbjct: 2   NDPGETPQETLERLTRAGAAKRYPEGIPAK------VAPQIEYELDLIGKKNYASYFLTV 55

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
              IQ A+ +   +  GRGS A SV  Y L IT++DP + +LLF+RF++ DR   PD D+
Sbjct: 56  HRIIQHARYDLKVLCQGRGSAANSVICYCLEITEVDPQKSTLLFDRFISMDRDEPPDIDV 115

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DF  DRR+EVI+++   Y  E         + + ++A R+V +A  +       +  L+ 
Sbjct: 116 DFEHDRREEVIQFIYKNYKREHAGLTAGVTTYRTRSAGREVAKAFGLSEDVQSAISSLVW 175

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 +S      D++     + DP    +L+ + +L G  RH + H  G VI    L 
Sbjct: 176 GWSEDNLS----ERDAKAAGLDVKDPVTRNVLKYASELLGFPRHLTQHVGGFVITRDRLD 231

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG----VKV 596
           ++VP+ +    D  + +++   ++   ++K D L L  LT L+K+   L           
Sbjct: 232 EVVPIMKTAMPDRYMIEWDKDDLDNVKILKVDVLALGMLTCLRKAFSLLELHYDVKKTLA 291

Query: 597 DLSLIPFDD--HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
           DL      D     Y ++    TLG+FQ+ES      L  ++P    D++  V++ RPGP
Sbjct: 292 DLGNREHGDEGKPVYEMMGRADTLGVFQIESRAQMSMLPRLKPKIFYDLVIEVAIVRPGP 351

Query: 655 I--DNIVVYNNRKNGKE---KIVSIHPLIDPMLK 683
           I  D +  Y  R+  +     I      +  +L+
Sbjct: 352 IQGDMVHPYLKRREQRARNIPIEYPSKELGAVLE 385


>gi|237711879|ref|ZP_04542360.1| DNA polymerase III alpha subunit [Bacteroides sp. 9_1_42FAA]
 gi|317474977|ref|ZP_07934246.1| bacterial DNA polymerase III alpha subunit [Bacteroides eggerthii
            1_2_48FAA]
 gi|229454574|gb|EEO60295.1| DNA polymerase III alpha subunit [Bacteroides sp. 9_1_42FAA]
 gi|316908880|gb|EFV30565.1| bacterial DNA polymerase III alpha subunit [Bacteroides eggerthii
            1_2_48FAA]
          Length = 702

 Score =  325 bits (833), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 168/663 (25%), Positives = 288/663 (43%), Gaps = 90/663 (13%)

Query: 417  DFDIDFCQDRRDEVIRYVQNKY---GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            D D+D+  DRR E+  Y++ +Y   G +RV    TF +++ KAAL+DV R  ++P+S V+
Sbjct: 13   DIDVDYASDRRQEIKDYLEERYNADGRQRVFSAGTFTTMKLKAALKDVARVHRVPHSIVN 72

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
             +  +I +        +  A + + R+     P V   +E  Q L G  + AS HA+ IV
Sbjct: 73   YITAMIDDGTDWTGLFRQAASNRKLRDFIQTYPLV---IEDVQGLLGQPKAASIHASAIV 129

Query: 534  IGDR-------PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            +               +P+ +       V++F+   +++ GL+K D L  K L  L   +
Sbjct: 130  VTPDTRDGRPAECFDFLPVRK--MDGALVSEFDGYSVDEIGLLKEDVLATKELAKLSAVI 187

Query: 587  DFLAQRG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
              + +          ++    +D +TY LL+   T  +FQ  S G+ + ++ +QP+CIED
Sbjct: 188  ALVNRNFGQELTIGRITQDMLEDGKTYRLLSDGNTQNVFQFSSPGITRFIQDVQPECIED 247

Query: 643  IIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            +IA+ +LYRP  +D      Y   + G+   V  +   +   K T G+++YQEQ M +A 
Sbjct: 248  LIAVNALYRPATLDIGATDDYVRFRRGEVAPVYNYGCYE-ATKNTFGIMVYQEQFMSVAH 306

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             L G+ L + D+LR+A+GKK  + M   K  FI+GA  NG     A  I+  +     Y 
Sbjct: 307  TLGGFDLGKTDLLRKAIGKKKADLMATLKADFIAGAVGNGCPDYEAEEIWHKIEVAGKYS 366

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPP 819
            FN+SHAAAYA+ +Y  AW+K +YP  F   ++  +  + ++I     +  R    +I+PP
Sbjct: 367  FNRSHAAAYALTAYCGAWLKANYPSAFYTVAL--QWADDKEIPSLMAEMERCSPAKIVPP 424

Query: 820  SVNTPCVDFKVGD--NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKK 876
             +N    +F      + I++SL  IK VG  T  +I+ E      +  +E+F  R+   K
Sbjct: 425  DINRSGTEFFTDYATDEIFWSLTRIKQVGLRTVEYIVTERDRGGAYTGIENFIHRIFRYK 484

Query: 877  LNR--------------------RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
            L +                    R ++ ++ AG  D     R++ + ++    + A    
Sbjct: 485  LKKYSYWDDPDNAEEAVKVPVNARHVKHMILAGCFD-----RIEKVGAVTE--RCALLER 537

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
              R       F+  +  F   +    F      +        +G          Y+ I  
Sbjct: 538  AARELG----FSLSEKDFPQDMRGRHFFWSQQQIAVSG----IG-SI------DYRRIFD 582

Query: 977  ----------KMGIKGYEESVATI-RGNNIRLAAMVVSK-------QQKKTRKGSRIGWV 1018
                      K      +E       G    + A VV         ++  +RK  R   +
Sbjct: 583  NSEASGQVKGKASYLTLDEVARDENDGRRAAVCATVVDVAEHTYKDRETGSRK--RFARL 640

Query: 1019 TFS 1021
            T S
Sbjct: 641  TLS 643


>gi|223930157|gb|ACN24727.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  325 bits (832), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 113/347 (32%), Positives = 197/347 (56%), Gaps = 7/347 (2%)

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A  
Sbjct: 3    IVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASANQ 62

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +
Sbjct: 63   VYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITE 122

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
            A+ + I ++ PS+N     F++ +   I YS   I+ V T     I+      PF    D
Sbjct: 123  AKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDFFD 182

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            FC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+F
Sbjct: 183  FCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLF 240

Query: 928  AHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            A +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I      
Sbjct: 241  AEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANL 300

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 301  SS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|223930145|gb|ACN24719.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930148|gb|ACN24721.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930172|gb|ACN24737.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930220|gb|ACN24769.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930256|gb|ACN24793.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930259|gb|ACN24795.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930298|gb|ACN24821.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930328|gb|ACN24841.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930331|gb|ACN24843.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930334|gb|ACN24845.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930364|gb|ACN24865.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930397|gb|ACN24887.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930427|gb|ACN24907.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930430|gb|ACN24909.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930433|gb|ACN24911.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930436|gb|ACN24913.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930439|gb|ACN24915.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930442|gb|ACN24917.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930445|gb|ACN24919.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 113/347 (32%), Positives = 197/347 (56%), Gaps = 7/347 (2%)

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A  
Sbjct: 3    IVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASANQ 62

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +
Sbjct: 63   VYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITE 122

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
            A+ + I ++ PS+N     F++ +   I YS   I+ V T     I+      PF    D
Sbjct: 123  AKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDFFD 182

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            FC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+F
Sbjct: 183  FCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLF 240

Query: 928  AHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            A +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I      
Sbjct: 241  AEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANL 300

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 301  SS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|301633239|gb|ADK86793.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            pneumoniae FH]
          Length = 1443

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 160/913 (17%), Positives = 315/913 (34%), Gaps = 204/913 (22%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++ + +  G+ +L EL+S   L D       +  S LQ+     +I       G I +A 
Sbjct: 607  IIYIKSQSGFAKLYELLSIA-LTDNNATRPLVLTSTLQKFAKSFVI-TDNPVQGDIFKAA 664

Query: 160  FFNSSQVAEKRLLT--FKKLFGDRLYVNLQRHRGYDRYRESQVVQL----AYTHELPLVA 213
                 +  E  +    F  +     Y       G  +      ++L    A      +  
Sbjct: 665  LTKPLKELEAAIKRVDFVLIAPPDAYAGYTIREGLKKEAIPNAIKLVVDTAQRLNKLVAV 724

Query: 214  TNNSLFLSEEDYEAHDVLMAV-----AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             +++ F+   + E +  ++             + K+R +  P+ +++   EM++  S L 
Sbjct: 725  ASDAYFIHPWENEYYKAIVCAKGLGGRWHRHFNYKEREQRVPNVFVRTTGEMLNEMSFLG 784

Query: 269  EALE------NTVEIARRCSFI--LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
            E L       NT ++A++ +    + V   + P  IE   +++  +  ++   KA+ G  
Sbjct: 785  EQLAYELVVKNTNKLAKQLTADDLVPVQTKLQPPVIEGSNENLAAKTWSQ--AKAIYG-- 840

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                          +   QR+  EL  I    F   + I    ++ + ++   VGP RGS
Sbjct: 841  ----------DPLPKLIEQRIQEELKAIIDNGFGIIYWISHLLVKQSVQDGYFVGP-RGS 889

Query: 381  GAGSVTAYALTITDIDPL-----------------------------------------R 399
               S+ A  + I++I+PL                                          
Sbjct: 890  IGSSLVANLIGISEINPLVPHYLCESCQYFEVNEEVDDGYDLMVRDCPKCGAKAAFKGDG 949

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
             ++ F  F+      +PD D++F  + + +   YV+  +G +   +  T  ++  K A  
Sbjct: 950  HNIPFATFMGFAGDKIPDIDLNFSSEYQAKAHAYVRELFGEQYTFRAGTIATVAEKTAYG 1009

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                  ++                     L    +  RF+                QKL 
Sbjct: 1010 YARNYFEI----------------IKQTELATAPEIERFK----------------QKLV 1037

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H  GI+I    + + +  P      D  SD   T F    +    ++K D L
Sbjct: 1038 GIKRTTGQHPGGIMIFPNHKSVYEFTPCGYPADDTSSDWKTTHFEYDALGDT-ILKLDIL 1096

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGI 620
            G    T+L+   D        V+   IP  D +   +                  G +GI
Sbjct: 1097 GQDDPTMLKHLADL-----THVNPQNIPRFDKKLTEMFWSVNPLKLKPHYLDEPTGAIGI 1151

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +R+ LE  +P    D+I +  L       N+   N +K           ++  
Sbjct: 1152 PEFGTKFVRKILEQTKPKGFGDLIRVSGLSHGK---NVWADNAQK-----------ILKD 1197

Query: 681  MLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
                 + VI  ++ +M       + +  +    + +R+ +    KE    Q         
Sbjct: 1198 QNLSLKDVIACRDDIMLYLIHKGMQAKDAFEIMEKVRKGIALNAKEVQLMQ--------- 1248

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             NG+ +    +  ++      Y F K+HAAAY +++++ AW K ++P+ + A  ++ ++ 
Sbjct: 1249 SNGVEQHWINSCLKI-----SYLFPKAHAAAYVLMAWRIAWFKLYHPLSYYACLLSFKLK 1303

Query: 798  NVE-------------KIKKF----------------------CQDARQFNIQIMPPSVN 822
              +             K+++                         +     I++   S+ 
Sbjct: 1304 EHDVSGFKSGVSFVKQKLEELNTLYRIKRIKPKEAELLTSYEVYLEMMARGIKLEQISLT 1363

Query: 823  TP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                  F   +  +      I G+G   A  I+EA  +KPF SL+DF  R    K+ ++ 
Sbjct: 1364 HSHATRFVEHNGMLIAPFITIPGMGEAVANSIIEARNEKPFSSLDDFKKRT---KITKKH 1420

Query: 882  LESLVFAGALDCF 894
            +E+      LD F
Sbjct: 1421 IEAFTQMQLLDEF 1433



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S  +G  S+              IA+TD +N+       + A   G++ I 
Sbjct: 322 VELVFHTKMSAFDGINSVQEYAQFAKERDWKTIAVTDKDNIHIYPTLYEVAKKYGLKAIY 381

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++       ++N  KT       ++  + T
Sbjct: 382 GLECNLIDDHIKIVSNPDKTKLKDATFVIFDIET 415


>gi|223930109|gb|ACN24695.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930130|gb|ACN24709.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930166|gb|ACN24733.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930199|gb|ACN24755.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930205|gb|ACN24759.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930262|gb|ACN24797.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930322|gb|ACN24837.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930343|gb|ACN24851.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930373|gb|ACN24871.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930379|gb|ACN24875.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930409|gb|ACN24895.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930412|gb|ACN24897.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930418|gb|ACN24901.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930421|gb|ACN24903.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930424|gb|ACN24905.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930448|gb|ACN24921.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930466|gb|ACN24933.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  324 bits (831), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 113/347 (32%), Positives = 197/347 (56%), Gaps = 7/347 (2%)

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A  
Sbjct: 3    IVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASANQ 62

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +
Sbjct: 63   VYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITE 122

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
            A+ + I ++ PS+N     F++ +   I YS   I+ V T     I+      PF    D
Sbjct: 123  AKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDFFD 182

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            FC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+F
Sbjct: 183  FCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLF 240

Query: 928  AHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            A +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I      
Sbjct: 241  AEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANL 300

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 301  SS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|112961114|gb|ABI28176.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961117|gb|ABI28178.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961120|gb|ABI28180.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961123|gb|ABI28182.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961126|gb|ABI28184.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961129|gb|ABI28186.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961132|gb|ABI28188.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961135|gb|ABI28190.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961138|gb|ABI28192.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961141|gb|ABI28194.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961144|gb|ABI28196.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961147|gb|ABI28198.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961150|gb|ABI28200.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961153|gb|ABI28202.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961156|gb|ABI28204.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961159|gb|ABI28206.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961162|gb|ABI28208.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961165|gb|ABI28210.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961168|gb|ABI28212.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961171|gb|ABI28214.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961177|gb|ABI28218.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961183|gb|ABI28222.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961186|gb|ABI28224.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961189|gb|ABI28226.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961192|gb|ABI28228.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961195|gb|ABI28230.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961198|gb|ABI28232.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961201|gb|ABI28234.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961204|gb|ABI28236.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961207|gb|ABI28238.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961210|gb|ABI28240.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961213|gb|ABI28242.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961216|gb|ABI28244.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961219|gb|ABI28246.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961222|gb|ABI28248.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961225|gb|ABI28250.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961228|gb|ABI28252.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961231|gb|ABI28254.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961234|gb|ABI28256.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961237|gb|ABI28258.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961240|gb|ABI28260.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961243|gb|ABI28262.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961246|gb|ABI28264.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961249|gb|ABI28266.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961252|gb|ABI28268.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961255|gb|ABI28270.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961258|gb|ABI28272.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961261|gb|ABI28274.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961264|gb|ABI28276.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961267|gb|ABI28278.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961270|gb|ABI28280.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961273|gb|ABI28282.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961276|gb|ABI28284.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961279|gb|ABI28286.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961282|gb|ABI28288.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961285|gb|ABI28290.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961288|gb|ABI28292.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961291|gb|ABI28294.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961294|gb|ABI28296.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961297|gb|ABI28298.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
          Length = 454

 Score =  324 bits (831), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 112/345 (32%), Positives = 193/345 (55%), Gaps = 7/345 (2%)

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S   A  ++
Sbjct: 1    YQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSRGYSDASANQVY 60

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            +++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +A+
Sbjct: 61   DMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITEAK 120

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
             + I ++ PS+N     F+V +     YS   I+ V T     I+      PF    DFC
Sbjct: 121  NYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVPTKFILEIINERKKAPFRDFFDFC 180

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+FA 
Sbjct: 181  ERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLFAE 238

Query: 930  EKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
            +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I       +
Sbjct: 239  DDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANLSS 298

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 299  ---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 340


>gi|223930400|gb|ACN24889.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930403|gb|ACN24891.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  324 bits (830), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 113/347 (32%), Positives = 197/347 (56%), Gaps = 7/347 (2%)

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A  
Sbjct: 3    IVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASANQ 62

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +
Sbjct: 63   VYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITE 122

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
            A+ + I ++ PS+N     F++ +   I YS   I+ V T     I+      PF    D
Sbjct: 123  AKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDFFD 182

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            FC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+F
Sbjct: 183  FCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLF 240

Query: 928  AHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            A +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I      
Sbjct: 241  AEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANL 300

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 301  SS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|223930112|gb|ACN24697.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930118|gb|ACN24701.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930124|gb|ACN24705.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930127|gb|ACN24707.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930133|gb|ACN24711.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930136|gb|ACN24713.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930139|gb|ACN24715.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930142|gb|ACN24717.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930151|gb|ACN24723.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930154|gb|ACN24725.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930160|gb|ACN24729.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930163|gb|ACN24731.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930169|gb|ACN24735.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930178|gb|ACN24741.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930181|gb|ACN24743.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930184|gb|ACN24745.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930187|gb|ACN24747.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930190|gb|ACN24749.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930196|gb|ACN24753.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930202|gb|ACN24757.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930214|gb|ACN24765.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930223|gb|ACN24771.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930226|gb|ACN24773.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930229|gb|ACN24775.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930232|gb|ACN24777.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930235|gb|ACN24779.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930238|gb|ACN24781.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930241|gb|ACN24783.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930244|gb|ACN24785.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930247|gb|ACN24787.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930250|gb|ACN24789.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930253|gb|ACN24791.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930265|gb|ACN24799.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930268|gb|ACN24801.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930271|gb|ACN24803.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930274|gb|ACN24805.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930277|gb|ACN24807.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930280|gb|ACN24809.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930289|gb|ACN24815.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930292|gb|ACN24817.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930295|gb|ACN24819.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930301|gb|ACN24823.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930304|gb|ACN24825.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930307|gb|ACN24827.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930310|gb|ACN24829.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930313|gb|ACN24831.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930319|gb|ACN24835.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930325|gb|ACN24839.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930337|gb|ACN24847.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930349|gb|ACN24855.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930355|gb|ACN24859.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930361|gb|ACN24863.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930367|gb|ACN24867.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930370|gb|ACN24869.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930376|gb|ACN24873.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930385|gb|ACN24879.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930388|gb|ACN24881.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930391|gb|ACN24883.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930415|gb|ACN24899.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930451|gb|ACN24923.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930454|gb|ACN24925.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930457|gb|ACN24927.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930463|gb|ACN24931.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930478|gb|ACN24941.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930481|gb|ACN24943.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  324 bits (830), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 113/347 (32%), Positives = 197/347 (56%), Gaps = 7/347 (2%)

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A  
Sbjct: 3    IVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASANQ 62

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +
Sbjct: 63   VYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITE 122

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
            A+ + I ++ PS+N     F++ +   I YS   I+ V T     I+      PF    D
Sbjct: 123  AKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDFFD 182

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            FC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+F
Sbjct: 183  FCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLF 240

Query: 928  AHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            A +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I      
Sbjct: 241  AEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANL 300

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 301  SS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|223930394|gb|ACN24885.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  324 bits (830), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 113/347 (32%), Positives = 197/347 (56%), Gaps = 7/347 (2%)

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A  
Sbjct: 3    IVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASANQ 62

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +
Sbjct: 63   VYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITE 122

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
            A+ + I ++ PS+N     F++ +   I YS   I+ V T     I+      PF    D
Sbjct: 123  AKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDFFD 182

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            FC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+F
Sbjct: 183  FCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLF 240

Query: 928  AHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            A +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I      
Sbjct: 241  AEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANL 300

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 301  SS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|223930211|gb|ACN24763.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  324 bits (830), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 113/347 (32%), Positives = 197/347 (56%), Gaps = 7/347 (2%)

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A  
Sbjct: 3    IVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASANQ 62

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +
Sbjct: 63   VYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITE 122

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
            A+ + I ++ PS+N     F++ +   I YS   I+ V T     I+      PF    D
Sbjct: 123  AKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDFFD 182

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            FC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+F
Sbjct: 183  FCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLF 240

Query: 928  AHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            A +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I      
Sbjct: 241  AEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANL 300

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 301  SS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|165928515|ref|ZP_02224347.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165919449|gb|EDR36805.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. F1991016]
          Length = 569

 Score =  324 bits (830), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 152/585 (25%), Positives = 257/585 (43%), Gaps = 44/585 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L V + +SL E AL   N +         A+   D+ N+ S +   Q+A    +  I G 
Sbjct: 4   LMVRTDFSLGESALKAENAVKIARDAGYTAVISADSMNIASVIPL-QRAAGDDMAVICGV 62

Query: 74  Q----LDIDMQDNLKMTNQGKTP-----FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +     D   +   ++  + +                L+   +GY+ + EL++     +Q
Sbjct: 63  KLNVVDDPTYEHRARLAKESERCMESLVRDRSYCFTALIKNEQGYRDVCELMTLANKREQ 122

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                R+ L  L     +G I+L     G + +         A+           D  Y 
Sbjct: 123 FYFVPRLALDQLAAAYAKGNIILLTSDIGSVFQ-----RRDFAKIIGTLVTAGGRDNFYS 177

Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +  H   +      + +++A   ++  VA   + + + +D +  D+   V ++  + Q 
Sbjct: 178 VVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYEAVDDADIKDIAHMVTNNIKIDQP 237

Query: 244 DRPRVTPDHY-----LKNRSEMVSIFS---DLP--EALENTVE--IARRCSFILQVHAPI 291
            R R+           ++  E +  FS   D+P   A+ +T +  I   C++      P 
Sbjct: 238 HRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEACTWRWHELPPA 297

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVI 348
           LP+  + E           L   AVAGL  RL     G        + Y  RL +E++ +
Sbjct: 298 LPKMADDEPAT--------LMKLAVAGLRKRLTTKEFGYTPPASEHRVYVDRLKYEMDTL 349

Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
            R+ F GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFERF+
Sbjct: 350 TRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFI 409

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
           NP+R+ +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R   + 
Sbjct: 410 NPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIYGVD 469

Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            + +  + K   N     +SL+ + +  +               + + KL+ L R    H
Sbjct: 470 AADM-AVSKEFKNLEDDSLSLEELRE--QLASLDKYATKYPEAFKAACKLQSLMRGFGRH 526

Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
           AAG+++   PL +  P+   +R +     F+ ++ E  GLIK D 
Sbjct: 527 AAGMIVAGVPLVERTPVE--LRGNARCIAFDKRYCEAMGLIKLDV 569


>gi|223930175|gb|ACN24739.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  323 bits (829), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 113/347 (32%), Positives = 197/347 (56%), Gaps = 7/347 (2%)

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A  
Sbjct: 3    IVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASANQ 62

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +
Sbjct: 63   VYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITE 122

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
            A+ + I ++ PS+N     F++ +   I YS   I+ V T     I+      PF    D
Sbjct: 123  AKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDFFD 182

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            FC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+F
Sbjct: 183  FCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDVVLQYISLLGED--SKGMNLF 240

Query: 928  AHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            A +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I      
Sbjct: 241  AEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANL 300

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 301  SS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|223930121|gb|ACN24703.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930193|gb|ACN24751.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930208|gb|ACN24761.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930217|gb|ACN24767.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930283|gb|ACN24811.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930286|gb|ACN24813.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930316|gb|ACN24833.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930340|gb|ACN24849.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930346|gb|ACN24853.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930352|gb|ACN24857.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930358|gb|ACN24861.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930382|gb|ACN24877.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930460|gb|ACN24929.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930469|gb|ACN24935.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930472|gb|ACN24937.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930475|gb|ACN24939.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930484|gb|ACN24945.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  323 bits (828), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 113/347 (32%), Positives = 197/347 (56%), Gaps = 7/347 (2%)

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A  
Sbjct: 3    IVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASANQ 62

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +
Sbjct: 63   VYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITE 122

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
            A+ + I ++ PS+N     F++ +   I YS   I+ V T     I+      PF    D
Sbjct: 123  AKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDFFD 182

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            FC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+F
Sbjct: 183  FCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLF 240

Query: 928  AHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            A +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I      
Sbjct: 241  AEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANL 300

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 301  FS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|13507773|ref|NP_109722.1| DNA polymerase III PolC [Mycoplasma pneumoniae M129]
 gi|2494192|sp|P75080|DPO3_MYCPN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|1673778|gb|AAB95768.1| DNA polymerase III (dnaE) alpha chain [Mycoplasma pneumoniae M129]
          Length = 1443

 Score =  323 bits (828), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 160/913 (17%), Positives = 316/913 (34%), Gaps = 204/913 (22%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++ + +  G+ +L EL+S   L D       +  S LQ+     +I       G I +A 
Sbjct: 607  IIYIKSQSGFAKLYELLSIA-LTDNNATRPLVLTSTLQKFAKSFVI-TDNPVQGDIFKAA 664

Query: 160  FFNSSQVAEKRLLT--FKKLFGDRLYVNLQRHRGYDRYRESQVVQL----AYTHELPLVA 213
                 +  E  +    F  +     Y       G  +      ++L    A      +  
Sbjct: 665  LTKPLKELEAAIKRVDFVLIAPPGAYAGYTIREGLKKEAIPNAIKLVVDTAQRLNKLVAV 724

Query: 214  TNNSLFLSEEDYEAHDVLMAV-----AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             +++ F+   + E +  ++             + K+R +  P+ +++   EM++  S L 
Sbjct: 725  ASDAYFIHPWENEYYKAIVCAKGLGGRWHRHFNYKEREQRVPNVFVRTTGEMLNEMSFLG 784

Query: 269  E------ALENTVEIARRCSFI--LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
            E       +ENT ++A++ +    + V   + P  IE   +++  +  ++   KA+ G  
Sbjct: 785  EQLAYELVVENTNKLAKQLTADDLVPVQTKLQPPVIEGSNENLAAKTWSQ--AKAIYG-- 840

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                          +   QR+  EL  I    F   + I    ++ + ++   VGP RGS
Sbjct: 841  ----------DPLPKLIEQRIQEELKAIIDNGFGIIYWISHLLVKQSVQDGYFVGP-RGS 889

Query: 381  GAGSVTAYALTITDIDPL-----------------------------------------R 399
               S+ A  + I++I+PL                                          
Sbjct: 890  IGSSLVANLIGISEINPLVPHYLCESCQYFEVNEEVDDGYDLMVRDCPKCGAKAAFKGDG 949

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
             ++ F  F+      +PD D++F  + + +   YV+  +G +   +  T  ++  K A  
Sbjct: 950  HNIPFATFMGFAGDKIPDIDLNFSSEYQAKAHAYVRELFGEQYTFRAGTIATVAEKTAYG 1009

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                  ++                     L    +  RF+                QKL 
Sbjct: 1010 YARNYFEI----------------IKQTELATAPEIERFK----------------QKLV 1037

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H  GI+I    + + +  P      D  SD   T F    +    ++K D L
Sbjct: 1038 GIKRTTGQHPGGIMIFPNHKSVYEFTPCGYPADDTSSDWKTTHFEYDALGNT-ILKLDIL 1096

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL--------------TTKGTLGI 620
            G    T+L+   D        V+   IP  D +   +                  G +GI
Sbjct: 1097 GQDDPTMLKHLGDL-----THVNPQNIPRFDKKLTEMFWSVNPLKLKPHYLDEPTGAIGI 1151

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +R+ LE  +P    D+I +  L       N+   N +K           ++  
Sbjct: 1152 PEFGTKFVRKILEQTKPKGFGDLIRVSGLSHGK---NVWADNAQK-----------ILKD 1197

Query: 681  MLKETQGVIIYQEQVM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
                 + VI  ++ +M       + +  +    + +R+ +    KE    Q         
Sbjct: 1198 QNLSLKDVIACRDDIMLYLIHKGMQAKDAFEIMEKVRKGIALNAKEVQLMQ--------- 1248

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             NG+ +    +  ++      Y F K+HAAAY +++++ AW K ++P+ + A  ++ ++ 
Sbjct: 1249 SNGVEQHWINSCLKI-----SYLFPKAHAAAYVLMAWRIAWFKLYHPLSYYACLLSFKLK 1303

Query: 798  NVE-------------KIKKF----------------------CQDARQFNIQIMPPSVN 822
              +             K+++                         +     I++   S+ 
Sbjct: 1304 EHDVSGFKSGVSFVKQKLEELNTLYRIKRIKPKEAELLTSYEVYLEMMARGIKLEQISLT 1363

Query: 823  TP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                  F   +  +      I G+G   A  I+EA  +KPF SL+DF  R    K+ ++ 
Sbjct: 1364 HSHATRFVEHNGMLIAPFITIPGMGEAVANSIIEARNEKPFSSLDDFKKRT---KITKKH 1420

Query: 882  LESLVFAGALDCF 894
            +E+      LD F
Sbjct: 1421 IEAFTQMQLLDEF 1433



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 1/99 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S  +G  S+              IA+TD +N+       + A   G++ I 
Sbjct: 322 VELVFHTKMSAFDGINSVQEYAQFAKERDWKTIAVTDKDNIHIYPTLYEVAKKYGLKAIY 381

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
           G + ++       ++N  KT       ++  + T  G  
Sbjct: 382 GLECNLIDDHIKIVSNPDKTKLKDATFVIFDIET-TGLH 419


>gi|309805518|ref|ZP_07699563.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 09V1-c]
 gi|308165169|gb|EFO67407.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 09V1-c]
          Length = 641

 Score =  322 bits (826), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 129/717 (17%), Positives = 243/717 (33%), Gaps = 183/717 (25%)

Query: 276 EIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
            IA +   +  + + + P  IE   KE + +  ++ +EL                     
Sbjct: 1   MIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHELYG-----------------NP 43

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
             +  + RL++EL  I    ++  +LI    +  + K+   VG  RGS   S+ A    I
Sbjct: 44  LPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGSVGSSLVATMSGI 102

Query: 393 TDIDPL---------RFSLLFER--------------------------------FLNPD 411
           T+++PL         ++S  FE+                                FL   
Sbjct: 103 TEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCNADLAKDGQDIPFATFLGFH 162

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
              +PD D++F  D +     Y++  +G +   +  T G++  K A   V          
Sbjct: 163 GDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADKIAYGYV---------- 212

Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                             +   D++  +   L +  +DRL   SQ   G+ R    H AG
Sbjct: 213 ------------------KHYEDENELK---LRNAELDRL---SQGASGVKRTTGQHPAG 248

Query: 532 IVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
           IV+   D  +    P+             T F+   I    ++KFD LG    T+++   
Sbjct: 249 IVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILKFDILGHDDPTMIRMLQ 307

Query: 587 DFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKGTLGIFQLESSGMRQAL 632
           D        VD   IP  D     L +                GTLG+ +  +  +R  L
Sbjct: 308 DL-----SGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTGTLGVPEFGTKFVRGML 362

Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           E  +P    +++ +  L     +      +    G  K+ ++    D ++ +     +  
Sbjct: 363 EETKPTTFSELLQISGLSHGTDVWLGNAEDLINKGICKLKNVIGCRDNIMTDLIHWDVPP 422

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           E           +S  E+    + +  +    + K K                  + +  
Sbjct: 423 EVA---------FSTMESVRHGKGISDENMAILSKNKN---------------IPDWYIQ 458

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK--------- 803
                 Y F K+HA AY +++ + AW K +YPV +  + +++  D  + +          
Sbjct: 459 SCLKIKYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRADLFDIVAMSHGKNTVK 518

Query: 804 ------------------------KFCQDARQFNIQIMPPSVNTP-CVDFKV-GDNRIYY 837
                                   +   +  +  I I    +     ++FK+  ++ I  
Sbjct: 519 AAMKKIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEKSDALNFKILDEHNILA 578

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               + G+G   A+ I+ A  ++PF S ED   R    K+++ ++E     G LD  
Sbjct: 579 PFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTIMEYFENNGVLDGL 632


>gi|223930115|gb|ACN24699.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  322 bits (826), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 113/347 (32%), Positives = 197/347 (56%), Gaps = 7/347 (2%)

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A  
Sbjct: 3    IVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASANQ 62

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +
Sbjct: 63   VYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITE 122

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
            A+ + I ++ PS+N     F++ +   I YS   I+ V T     I+      PF    D
Sbjct: 123  AKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKVPFRDFFD 182

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            FC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+F
Sbjct: 183  FCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLF 240

Query: 928  AHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            A +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I      
Sbjct: 241  AEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANL 300

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 301  SS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|54020575|ref|YP_116058.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae 232]
 gi|53987748|gb|AAV27949.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 232]
          Length = 1469

 Score =  322 bits (826), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 158/934 (16%), Positives = 320/934 (34%), Gaps = 205/934 (21%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + ++     G ++L +LVS     +       I    LQ+     L++ +GG    + +
Sbjct: 607  QLTIIAKNQIGIKKLYKLVSLANTENLI-SRPLIFYDHLQK--DPDLLIGSGGPESLLIQ 663

Query: 158  AFF-FNSSQVAE-KRLLTFKKLFGDRLYVNLQRHRGY--DRYRE--SQVVQLAYTHELPL 211
                F    VAE   +  F ++     +++L +   +  D+  E    ++ LA   ++P 
Sbjct: 664  TMLYFGPKNVAEFAHIFDFIEIPPPSAFIHLVKREIFTKDQIEEMLKNLINLAKKLQIPA 723

Query: 212  VATNNSLFLSEEDYEAHD-------------VLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            VA  +  +   ++   ++             VL           ++     P+ +  +  
Sbjct: 724  VAIGDVRYCLPKEKIFYELYIYAKGVGGVNHVLFDHREKEREDFRNSHIF-PEKHFFSTE 782

Query: 259  EMVSIFSDLPE-------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            E+   F  L +        ++N+  +A      +Q+   I         D+ + + +  +
Sbjct: 783  ELKKEFEFLEDQQLIEEIVVKNSNFVADLIENNIQI---IKSGLYPPSFDNSEVKLKEFV 839

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
              KA                +  +    R+  EL  I    F   + I    +  AK   
Sbjct: 840  YKKAYEKYGR----------FLPKLIENRIKTELEPIINHGFHVVYWISKHIVTEAKSQG 889

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPL--------------------------------- 398
              V   RGS   S+ A+   ITD++PL                                 
Sbjct: 890  AIVD-SRGSVGSSIVAFLTGITDVNPLLPHYWCKKCSKVEFPKSQQFLSGYDLPDKNCLD 948

Query: 399  --------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
                      ++ FE FL  +   +PD D++F    + ++  +V+  +G  +  +  T  
Sbjct: 949  CYKKMEKDGHNIPFETFLGFNVEKVPDIDLNFSGQTQLKMHDFVRTLFGINKTFRAGTIL 1008

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            +   K     + R L    +++D         P   ++ +     S F +          
Sbjct: 1009 TNAEKTVYG-LARKLGEYRARLD---------PKFDLNREVSYFTSAFLDF--------- 1049

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPM---YRDVRSDLPVTQFNMKWIEK 565
               ++ K +G+ R +  HA GI++    + +    P+     + +SD   T F+   +  
Sbjct: 1050 ---LATKAQGVKRTSGKHAGGIIVIPQNQEIEDFTPINYPANNEKSDWKTTHFDYNALHD 1106

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT----------- 614
              L+K D LG    T+L         +        IP  D +   L  +           
Sbjct: 1107 -NLLKLDILGHDDPTILLHLEKLTNIKS-----DEIPKSDPKILSLFRSCKELGISSDQI 1160

Query: 615  ----KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
                 GT+GI +  +  +R+ L+  Q     DI+A+  L        +   N  K   EK
Sbjct: 1161 LGEVTGTIGIPEFGTQFVRKMLQIAQVKSFADIVAICGLAHGT---GVWQDNAEKLILEK 1217

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
                  +I+ ++     ++IY  Q     Q+   +++ E     + +  + KE ++    
Sbjct: 1218 ----KHVINELISCRDDIMIYLLQKNIDHQVA--FNIMENVRKGKGLTDQEKELLEL--- 1268

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                             + +    +   Y F K+HA AYA+ +++ A+ K ++P+ F ++
Sbjct: 1269 -------------KKVPSWYIESLQKIGYLFPKAHAVAYAMKAWKIAYFKLYHPLAFYSS 1315

Query: 791  SMTLEMDNVE---------KIKKFCQ-------------------------------DAR 810
              ++  D  +         KI++                                  + +
Sbjct: 1316 YFSIRPDVKDLETLIQPVEKIREKINILNKKRLESQKGIQQLSAKEKDLIQFLEISLELK 1375

Query: 811  QFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
                +I   S+        +    +N +     AI G+G   AR I++A   +PF S+ED
Sbjct: 1376 SRGFEIEKVSLEKSEAQEWIINKENNSLIPPFIAIDGIGDVNARKIVQARNLRPFSSIED 1435

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            F  R ++   + + L+     G  D     R Q+
Sbjct: 1436 FEKRTETNSTSLKKLK---ELGIFDKISK-RAQV 1465



 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V +   +  S ++G  S    +     +   AI ITD +++ +  EF     +  I+PI 
Sbjct: 323 VEIAARTWKSTMDGISSAKEYVQHALKNGYLAIGITDLDSVQAFPEFYNAIKSTNIKPIY 382

Query: 72  GCQL 75
           G   
Sbjct: 383 GSTF 386


>gi|112961174|gb|ABI28216.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961180|gb|ABI28220.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
          Length = 454

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 112/345 (32%), Positives = 193/345 (55%), Gaps = 7/345 (2%)

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S   A  ++
Sbjct: 1    YQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSRGYSDASANQVY 60

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            +++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +A+
Sbjct: 61   DMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITEAK 120

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
             + I ++ PS+N     F+V +     YS   I+ V T     I+      PF    DFC
Sbjct: 121  NYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVLTKFILEIINERKKAPFRDFFDFC 180

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+FA 
Sbjct: 181  ERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLFAE 238

Query: 930  EKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
            +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I       +
Sbjct: 239  DDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANLSS 298

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 299  ---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 340


>gi|157284473|gb|ABV31084.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
          Length = 339

 Score =  321 bits (824), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 129/355 (36%), Positives = 190/355 (53%), Gaps = 21/355 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDDLT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGHTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ A
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVA 339


>gi|157284469|gb|ABV31082.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
 gi|157284471|gb|ABV31083.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
 gi|157284475|gb|ABV31085.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
 gi|157284477|gb|ABV31086.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
 gi|157284481|gb|ABV31088.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
          Length = 339

 Score =  321 bits (824), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 129/355 (36%), Positives = 190/355 (53%), Gaps = 21/355 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ A
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVA 339


>gi|71893884|ref|YP_279330.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae J]
 gi|71852011|gb|AAZ44619.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae J]
          Length = 1468

 Score =  320 bits (821), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 157/934 (16%), Positives = 320/934 (34%), Gaps = 205/934 (21%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + ++     G ++L +LVS     +       I    LQ+     L++ +GG    + +
Sbjct: 606  QLTIIAKNQIGIKKLYKLVSLANTENLI-SRPLIFYDHLQK--DPDLLIGSGGPESLLIQ 662

Query: 158  AFF-FNSSQVAE-KRLLTFKKLFGDRLYVNLQRHRGY--DRYRE--SQVVQLAYTHELPL 211
                F    VAE   +  F ++     +++L +   +  D+  +    ++ LA   ++P 
Sbjct: 663  TMLYFGPKNVAEFAHIFDFIEIPPPSAFIHLVKREIFTKDQIEDMLKNLINLAKKLQIPA 722

Query: 212  VATNNSLFLSEEDYEAHD-------------VLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            VA  +  +   ++   ++             VL           ++     P+ +  +  
Sbjct: 723  VAIGDVRYCLPKEKIFYELYIYAKGVGGVNHVLFDHREKEREDFRNSHIF-PEKHFFSTE 781

Query: 259  EMVSIFSDLPE-------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            E+   F  L +        ++N+  +A      +Q+   I         D+ + + +  +
Sbjct: 782  ELKKEFEFLEDQQLIEEIVVKNSNFVADLIENNIQI---IKSGLYPPSFDNSEVKLKEFV 838

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
              KA                +  +    R+  EL  I    F   + I    +  AK   
Sbjct: 839  YKKAYEKYGR----------FLPKLIENRIKTELEPIINQGFHVVYWISKHIVTEAKSQG 888

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPL--------------------------------- 398
              V   RGS   S+ A+   ITD++PL                                 
Sbjct: 889  AIVD-SRGSVGSSIVAFLTGITDVNPLLPHYWCKKCSKVEFPKSQQFLSGYDLPDKNCLD 947

Query: 399  --------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
                      ++ FE FL  +   +PD D++F    + ++  +V+  +G  +  +  T  
Sbjct: 948  CYKKMEKDGHNIPFETFLGFNVEKVPDIDLNFSGQTQLKMHDFVRTLFGINKTFRAGTIL 1007

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            +   K     + R L    +++D         P   ++ +     S F +          
Sbjct: 1008 TNAEKTVYG-LARKLGEYRARLD---------PKFDLNREVSYFTSAFLDF--------- 1048

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPM---YRDVRSDLPVTQFNMKWIEK 565
               ++ K +G+ R +  HA GI++    + +    P+     + +SD   T F+   +  
Sbjct: 1049 ---LATKAQGVKRTSGKHAGGIIVIPQNQEIEDFTPINYPANNEKSDWKTTHFDYNALHD 1105

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT----------- 614
              L+K D LG    T+L         +        IP  D +   L  +           
Sbjct: 1106 -NLLKLDILGHDDPTILLHLEKLTNIKS-----DEIPKSDPKILSLFRSCKELGISSDQI 1159

Query: 615  ----KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
                 GT+GI +  +  +R+ L+  Q     DI+A+  L        +   N  K   EK
Sbjct: 1160 LGEVTGTIGIPEFGTQFVRKMLQIAQVKSFADIVAICGLAHGT---GVWQDNAEKLILEK 1216

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
                  +I+ ++     ++IY  Q     Q+   +++ E     + +  + KE ++    
Sbjct: 1217 ----KHVINELISCRDDIMIYLLQKNIDHQVA--FNIMENVRKGKGLTDQEKELLEL--- 1267

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                             + +    +   Y F K+HA AYA+ +++ A+ K ++P+ F ++
Sbjct: 1268 -------------KKVPSWYIESLQKIGYLFPKAHAVAYAMKAWKIAYFKLYHPLAFYSS 1314

Query: 791  SMTLEMDNVE---------KIKKFCQ-------------------------------DAR 810
              ++  D  +         KI++                                  + +
Sbjct: 1315 YFSIRPDVKDLETLIQPVEKIREKISILNKKRLESQKGIQQLSAKEKDLIQFLEISLELK 1374

Query: 811  QFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
                +I   S+        +    +N +     AI G+G   AR I++A   +PF S+ED
Sbjct: 1375 SRGFEIEKVSLEKSEAQEWIINKENNSLIPPFIAIDGIGDVNARKIVQARNLRPFSSIED 1434

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            F  R ++   + + L+     G  D     R Q+
Sbjct: 1435 FEKRTETNSTSLKKLK---ELGIFDKISK-RAQV 1464



 Score = 59.2 bits (142), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V +   +  S ++G  S    +     +   AI I D +++ +  EF     +  I+PI 
Sbjct: 322 VEIAARTWKSTMDGISSAKEYVQHALKNGYLAIGIADLDSVQAFPEFYNAIKSTNIKPIY 381

Query: 72  GCQL 75
           G   
Sbjct: 382 GSTF 385


>gi|312601484|gb|ADQ90739.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 168]
          Length = 1447

 Score =  320 bits (821), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 157/934 (16%), Positives = 320/934 (34%), Gaps = 205/934 (21%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + ++     G ++L +LVS     +       I    LQ+     L++ +GG    + +
Sbjct: 585  QLTIVAKNQIGIKKLYKLVSLANTENLI-SRPLIFYDHLQK--DPDLLIGSGGPESLLIQ 641

Query: 158  AFF-FNSSQVAE-KRLLTFKKLFGDRLYVNLQRHRGY--DRYRE--SQVVQLAYTHELPL 211
                F    VAE   +  F ++     +++L +   +  D+  +    ++ LA   ++P 
Sbjct: 642  TMLYFGPKNVAEFAHIFDFIEIPPPSAFIHLVKREIFTKDQIEDMLKNLINLAKKLQIPA 701

Query: 212  VATNNSLFLSEEDYEAHD-------------VLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            VA  +  +   ++   ++             VL           ++     P+ +  +  
Sbjct: 702  VAIGDVRYCLPKEKIFYELYIYAKGVGGVNHVLFDHREKEREDFRNSHIF-PEKHFFSTE 760

Query: 259  EMVSIFSDLPE-------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            E+   F  L +        ++N+  +A      +Q+   I         D+ + + +  +
Sbjct: 761  ELKKEFEFLEDQQLIEEIVVKNSNFVADLIENNIQI---IKSGLYPPSFDNSEVKLKEFV 817

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
              KA                +  +    R+  EL  I    F   + I    +  AK   
Sbjct: 818  YKKAYEKYGR----------FLPKLIENRIKTELEPIINQGFHVVYWISKHIVTEAKSQG 867

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPL--------------------------------- 398
              V   RGS   S+ A+   ITD++PL                                 
Sbjct: 868  AIVD-SRGSVGSSIVAFLTGITDVNPLLPHYWCKKCSKVEFPKSQQFLSGYDLPDKNCLD 926

Query: 399  --------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
                      ++ FE FL  +   +PD D++F    + ++  +V+  +G  +  +  T  
Sbjct: 927  CYKKMEKDGHNIPFETFLGFNVEKVPDIDLNFSGQTQLKMHDFVRTLFGINKTFRAGTIL 986

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            +   K     + R L    +++D         P   ++ +     S F +          
Sbjct: 987  TNAEKTVYG-LARKLGEYRARLD---------PKFDLNREVSYFTSAFLDF--------- 1027

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPM---YRDVRSDLPVTQFNMKWIEK 565
               ++ K +G+ R +  HA GI++    + +    P+     + +SD   T F+   +  
Sbjct: 1028 ---LATKAQGVKRTSGKHAGGIIVIPQNQEIEDFTPINYPANNEKSDWKTTHFDYNALHD 1084

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT----------- 614
              L+K D LG    T+L         +        IP  D +   L  +           
Sbjct: 1085 -NLLKLDILGHDDPTILLHLEKLTNIKS-----DEIPKSDPKILSLFRSCKELGISSDQI 1138

Query: 615  ----KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
                 GT+GI +  +  +R+ L+  Q     DI+A+  L        +   N  K   EK
Sbjct: 1139 LGEVTGTIGIPEFGTQFVRKMLQIAQVKSFADIVAICGLAHGT---GVWQDNAEKLILEK 1195

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
                  +I+ ++     ++IY  Q     Q+   +++ E     + +  + KE ++    
Sbjct: 1196 ----KHVINELISCRDDIMIYLLQKNIDHQVA--FNIMENVRKGKGLTDQEKELLEL--- 1246

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                             + +    +   Y F K+HA AYA+ +++ A+ K ++P+ F ++
Sbjct: 1247 -------------KKVPSWYIESLQKIGYLFPKAHAVAYAMKAWKIAYFKLYHPLAFYSS 1293

Query: 791  SMTLEMDNVE---------KIKKFCQ-------------------------------DAR 810
              ++  D  +         KI++                                  + +
Sbjct: 1294 YFSIRPDVKDLETLIQPAEKIREKINILNKKRLESQKGIQQLSAKEKDLIQFLEISLELK 1353

Query: 811  QFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
                +I   S+        +    +N +     AI G+G   AR I++A   +PF S+ED
Sbjct: 1354 SRGFEIEKVSLEKSEAQEWIINKENNSLIPPFIAIDGIGDVNARKIVQARNLRPFSSIED 1413

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            F  R ++   + + L+     G  D     R Q+
Sbjct: 1414 FEKRTETNSTSLKKLK---ELGIFDKISK-RAQV 1443



 Score = 59.2 bits (142), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V +   +  S ++G  S    +     +   AI I D +++ +  EF     +  I+PI 
Sbjct: 301 VEIAARTWKSTMDGISSAKEYVQHALKNGYLAIGIADLDSVQAFPEFYNAIKSTNIKPIY 360

Query: 72  GCQL 75
           G   
Sbjct: 361 GSTF 364


>gi|157284483|gb|ABV31089.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
          Length = 339

 Score =  320 bits (819), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 128/355 (36%), Positives = 189/355 (53%), Gaps = 21/355 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++P IG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPFIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ A
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVA 339


>gi|223930406|gb|ACN24893.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  319 bits (818), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 112/347 (32%), Positives = 196/347 (56%), Gaps = 7/347 (2%)

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A  
Sbjct: 3    IVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASANQ 62

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +
Sbjct: 63   VYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITE 122

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
            A+ + I ++ PS+N     F++ +   I YS   I+ V T     I+      PF    D
Sbjct: 123  AKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKVPFRDFFD 182

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            FC R+  K L+  VLE+LVF+G  D FG  R  +  ++D + +Y   + ++  +K  N+F
Sbjct: 183  FCERMPHKMLSETVLEALVFSGCFDEFGEDRATISATIDAVLQYISLLGED--SKGMNLF 240

Query: 928  AHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            A +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I      
Sbjct: 241  AEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANL 300

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 301  SS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|237800159|ref|ZP_04588620.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. oryzae
            str. 1_6]
 gi|331023016|gb|EGI03073.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. oryzae
            str. 1_6]
          Length = 451

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 110/325 (33%), Positives = 173/325 (53%), Gaps = 20/325 (6%)

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY ++SYQTAW+KTHYP 
Sbjct: 1    AKQRGGFIDGCKTNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHYPA 60

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F+AA ++ +M N +K+    ++ R   +++  P VNT    F V  D RI Y L AIKG
Sbjct: 61   PFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTVSDDGRILYGLGAIKG 120

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY-------- 896
            VG      I +A  + PF  L DFC+RVD K++N+R L+ L+ +GALD  G         
Sbjct: 121  VGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALDRLGPYFELEPKA 180

Query: 897  -------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KGTFSDKITLEKFSVEN 947
                   +R  LL +L+   + A+   ++R + H ++F     +       +  K    +
Sbjct: 181  YQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFVEADADVYASHRKTRESS 240

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
               R   E+  LG Y +GHP+D Y+  +R+   +   +           +A ++++ +  
Sbjct: 241  LKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQ--TVAGLIIALRVM 298

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
            K +KG ++G++T  + +   EA+ F
Sbjct: 299  KNKKGDKMGFITLDDRSARIEASLF 323


>gi|328462500|gb|EGF34509.1| DNA polymerase III DnaE [Lactobacillus rhamnosus MTCC 5462]
          Length = 331

 Score =  318 bits (816), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 112/320 (35%), Positives = 174/320 (54%), Gaps = 11/320 (3%)

Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
           ++NI  +  RKNG+E I    P +  +LK T GV++YQEQVMQ+A ++ G+SL EAD+LR
Sbjct: 1   MENIDTFIARKNGQEPIAYPDPALAKILKPTYGVLVYQEQVMQVANVMGGFSLGEADLLR 60

Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           RAM KK    +  ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+ +++
Sbjct: 61  RAMSKKKSSVLAAEQDKFIEGALKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSKVAF 120

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             A++K HYP  F AA M   M+N+ K++ + Q+A+   + ++ P +N     FK+   +
Sbjct: 121 WLAYLKVHYPAAFFAALMNASMNNLPKLRTYVQEAKARKVGLLGPDINQSNGGFKLSQGK 180

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
           I + L +IKG+       I  A  + PF  L D   R+D K L     ++   AGA D F
Sbjct: 181 IRFGLLSIKGMRRDFVEAIFAARKNGPFKDLRDLLQRLDPKWLKTDYYKAPTLAGAFDQF 240

Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
             +R Q L +LD +    +    +       +F+             +     +S R E 
Sbjct: 241 SNNRAQTLANLDELINSVKLAGND-----VGLFSMLAPKTI------EVPEMPASERLEA 289

Query: 955 EQRVLGFYFSGHPLDVYKPI 974
           E  VLG Y SGHP+D Y P+
Sbjct: 290 EAEVLGVYLSGHPVDKYAPL 309


>gi|218513826|ref|ZP_03510666.1| DNA polymerase III subunit alpha [Rhizobium etli 8C-3]
          Length = 276

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 167/244 (68%), Positives = 213/244 (87%), Gaps = 1/244 (0%)

Query: 444 AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREAR 502
           AQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA+P  L +AI ++ + +E  
Sbjct: 1   AQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPANPTPLSKAIEEEPKLQEEA 60

Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
             +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LVPMYRD RSD+PVTQFNMKW
Sbjct: 61  AKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKW 120

Query: 563 IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
           +E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP DD +TY +L+   T+G+FQ
Sbjct: 121 VEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGISVDLAAIPLDDKKTYEMLSRGETVGVFQ 180

Query: 623 LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
           +ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN RK+G E++ SIHP+ID +L
Sbjct: 181 VESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNARKHGDEELESIHPMIDHLL 240

Query: 683 KETQ 686
           KETQ
Sbjct: 241 KETQ 244


>gi|157284479|gb|ABV31087.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
          Length = 339

 Score =  318 bits (814), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 127/355 (35%), Positives = 191/355 (53%), Gaps = 21/355 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGLPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVN-LQRHRGYDRYRESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+  ++  R  +       + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLEAIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ A
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVA 339


>gi|116687207|ref|YP_840453.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
 gi|116652922|gb|ABK13560.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
          Length = 422

 Score =  317 bits (813), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 115/432 (26%), Positives = 186/432 (43%), Gaps = 31/432 (7%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A  A + 
Sbjct: 10  PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKVANMP 69

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            II          + ++T    +P     ++       +GY  L E +S   +  + K S
Sbjct: 70  LII--------GSHFRLTATDGSPALAFTAL---AMNRDGYGNLCEFISLGRMRGK-KGS 117

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            R+    +         +        I    F  + Q  +  +  F ++FGDR +V L  
Sbjct: 118 YRLAPLDVDHPEAPYAHLRGLPDCLAILSPDFPANEQRLDAHVEWFARVFGDRAWVALTL 177

Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
           H R  D      V ++A  H +P+VAT+  L          DVL  +     V++     
Sbjct: 178 HARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGRPVTECGYEL 237

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L++R  + +I+     ALE TV +ARRC+F L       P  +     D    
Sbjct: 238 APNAERHLRSRLRLANIYP--AGALEETVRVARRCTFSLDDLKYEYPDELVPAGTD---- 291

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               LR +   G   R   G         D + +++ EL +IA +K+  YFL V D +Q+
Sbjct: 292 PATYLREQTYIGARRRFPAGI------PIDVQAQIEHELQLIADLKYEAYFLTVYDIVQF 345

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID----F 422
           A++  I +  GRGS A S   Y L +T++DP R S+LFERF++ +R   PD D+     +
Sbjct: 346 AREQGI-LCQGRGSAANSSVCYCLGVTEVDPSRQSMLFERFISKERNEPPDIDVYRTLVY 404

Query: 423 CQDRRDEVIRYV 434
             +RR  +  + 
Sbjct: 405 TDERRTCLSAFC 416


>gi|223036058|gb|ACM78682.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  317 bits (812), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 128/352 (36%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I   WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKEWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036338|gb|ACM78822.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  316 bits (811), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 128/352 (36%), Positives = 188/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAKKYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036206|gb|ACM78756.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036360|gb|ACM78833.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  316 bits (811), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 129/352 (36%), Positives = 188/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   GI+PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGIKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223035962|gb|ACM78634.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  316 bits (811), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 127/352 (36%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++E  +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEGSFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|330971218|gb|EGH71284.1| error-prone DNA polymerase [Pseudomonas syringae pv. aceris str.
            M302273PT]
          Length = 437

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 102/404 (25%), Positives = 169/404 (41%), Gaps = 34/404 (8%)

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
             D++  V++ RPGPI  D +  Y  R+NG+E +    P ++ + K T GV ++QEQVM++
Sbjct: 1    YDLVIEVAIVRPGPIQGDMVHPYLRRRNGEEDVTYP-PKLESVFKRTLGVPLFQEQVMEV 59

Query: 699  AQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            A L + Y+  EAD LRRAM   K    ++  +ER  +G  KNG     A  IFE +  F 
Sbjct: 60   AILAADYTPGEADELRRAMAAWKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFG 119

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             YGF +SHAA++A+++Y + W+K H P  F  A +           +  QDAR+ +I+I 
Sbjct: 120  SYGFPESHAASFALLTYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIR 179

Query: 818  PPSVNTPCVDFKVGD---------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
            P  V     D  +             I   L  ++      A  I  A A +PF    D 
Sbjct: 180  PVDVRYSDWDCSLEPLDHPDRTRNLAIRLGLRMVRSFREEDALRIEAARAKRPFVDATDL 239

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              R +    + R  E+L  +GAL      R +    +  +                 +F 
Sbjct: 240  TLRAEL---DSRAAEALADSGALRGLIGHRHRARWEVAGV------------EAQRPLFD 284

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
                  +  I      +   +     +   LG     HPL + +  L     +  ++ + 
Sbjct: 285  DLPSEETQVI----LPLPTVAEDLVADYTTLGTTLGPHPLALLRRQLAAKRFRSSQDLLH 340

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                  + +A +V+ +Q+  T  G  + +VT  +         +
Sbjct: 341  LENDRTLSVAGLVIGRQRPGTASG--VTFVTLEDEFGMVNVVVW 382


>gi|223036148|gb|ACM78727.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 127/352 (36%), Positives = 188/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++E+ +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEDSFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223035960|gb|ACM78633.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
 gi|223035964|gb|ACM78635.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035966|gb|ACM78636.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035976|gb|ACM78641.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035978|gb|ACM78642.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035982|gb|ACM78644.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035984|gb|ACM78645.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035986|gb|ACM78646.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035990|gb|ACM78648.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035998|gb|ACM78652.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036002|gb|ACM78654.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O139]
 gi|223036004|gb|ACM78655.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
 gi|223036006|gb|ACM78656.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O395]
 gi|223036008|gb|ACM78657.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036010|gb|ACM78658.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036012|gb|ACM78659.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036016|gb|ACM78661.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036018|gb|ACM78662.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036022|gb|ACM78664.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036024|gb|ACM78665.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036028|gb|ACM78667.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036040|gb|ACM78673.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036042|gb|ACM78674.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036046|gb|ACM78676.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036048|gb|ACM78677.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036050|gb|ACM78678.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036054|gb|ACM78680.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036060|gb|ACM78683.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036062|gb|ACM78684.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036064|gb|ACM78685.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036070|gb|ACM78688.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036076|gb|ACM78691.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036078|gb|ACM78692.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036086|gb|ACM78696.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036088|gb|ACM78697.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036092|gb|ACM78699.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036094|gb|ACM78700.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036102|gb|ACM78704.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036108|gb|ACM78707.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036112|gb|ACM78709.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036116|gb|ACM78711.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036118|gb|ACM78712.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036120|gb|ACM78713.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036122|gb|ACM78714.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036126|gb|ACM78716.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036128|gb|ACM78717.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036130|gb|ACM78718.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036132|gb|ACM78719.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036134|gb|ACM78720.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036136|gb|ACM78721.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036140|gb|ACM78723.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036142|gb|ACM78724.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036144|gb|ACM78725.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036146|gb|ACM78726.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036154|gb|ACM78730.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036158|gb|ACM78732.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036160|gb|ACM78733.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036162|gb|ACM78734.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036164|gb|ACM78735.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036166|gb|ACM78736.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036168|gb|ACM78737.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036172|gb|ACM78739.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036174|gb|ACM78740.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036176|gb|ACM78741.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036178|gb|ACM78742.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036180|gb|ACM78743.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036182|gb|ACM78744.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036184|gb|ACM78745.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036190|gb|ACM78748.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036192|gb|ACM78749.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036194|gb|ACM78750.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036196|gb|ACM78751.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036198|gb|ACM78752.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036200|gb|ACM78753.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036202|gb|ACM78754.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036204|gb|ACM78755.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036208|gb|ACM78757.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036210|gb|ACM78758.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036212|gb|ACM78759.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036216|gb|ACM78761.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036218|gb|ACM78762.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036222|gb|ACM78764.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036226|gb|ACM78766.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036228|gb|ACM78767.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036230|gb|ACM78768.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036236|gb|ACM78771.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036240|gb|ACM78773.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036242|gb|ACM78774.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036244|gb|ACM78775.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036252|gb|ACM78779.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036254|gb|ACM78780.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036258|gb|ACM78782.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036260|gb|ACM78783.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036262|gb|ACM78784.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036264|gb|ACM78785.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036266|gb|ACM78786.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036268|gb|ACM78787.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036270|gb|ACM78788.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036278|gb|ACM78792.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036282|gb|ACM78794.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036290|gb|ACM78798.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036296|gb|ACM78801.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036298|gb|ACM78802.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036300|gb|ACM78803.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036304|gb|ACM78805.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036306|gb|ACM78806.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036308|gb|ACM78807.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036310|gb|ACM78808.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036312|gb|ACM78809.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036314|gb|ACM78810.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036316|gb|ACM78811.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036318|gb|ACM78812.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036320|gb|ACM78813.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036324|gb|ACM78815.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036326|gb|ACM78816.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036334|gb|ACM78820.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036354|gb|ACM78830.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036358|gb|ACM78832.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036364|gb|ACM78835.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036366|gb|ACM78836.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036368|gb|ACM78837.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036370|gb|ACM78838.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036378|gb|ACM78842.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 128/352 (36%), Positives = 188/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223035972|gb|ACM78639.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036044|gb|ACM78675.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036066|gb|ACM78686.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036068|gb|ACM78687.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036104|gb|ACM78705.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036110|gb|ACM78708.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036138|gb|ACM78722.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036156|gb|ACM78731.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036214|gb|ACM78760.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036246|gb|ACM78776.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036248|gb|ACM78777.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036280|gb|ACM78793.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036330|gb|ACM78818.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036376|gb|ACM78841.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 128/352 (36%), Positives = 188/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036100|gb|ACM78703.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036256|gb|ACM78781.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036272|gb|ACM78789.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036294|gb|ACM78800.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036344|gb|ACM78825.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036346|gb|ACM78826.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036350|gb|ACM78828.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 128/352 (36%), Positives = 188/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPDVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036284|gb|ACM78795.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036286|gb|ACM78796.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036288|gb|ACM78797.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  316 bits (809), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 128/352 (36%), Positives = 188/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNIGYKNLTLLISKAYLRGHVQHQPVIDKTWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223035980|gb|ACM78643.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036052|gb|ACM78679.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036342|gb|ACM78824.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036356|gb|ACM78831.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  316 bits (809), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 128/352 (36%), Positives = 188/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHIQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036096|gb|ACM78701.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. SA0605-25]
          Length = 336

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 125/352 (35%), Positives = 188/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   GI+PIIG    +          Q       + 
Sbjct: 1   ALGMPAMALTDFTNLCGLVKFYGAAHGNGIKPIIGADFKM----------QSPEFGDDLT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + +L +   GY+ L  L+S+ YL    +    I   WL E+ +EGLI+L+G  +G I +
Sbjct: 51  QLTVLAADNTGYKNLTLLISKAYLRGHVQHQPVIDKEWLIEL-SEGLILLSGARNGEIGK 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + ++ E  +  +++ F DR Y+ L R    D        ++LA  ++LP+VATN 
Sbjct: 110 ALLKGNQKLVESCVAFYQQHFADRFYLELIRTGRSDEETYLHFAIELAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F+ +E ++AH++ +A+     +    RP   +P  YL+   EM  +F+D+PEALEN+V
Sbjct: 170 VVFIGQELFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F  +        E   L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLWEYFLPAFPTE-----GMAETEFLVMKSKEGLEERLEFLFPDPEIRAQ 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGS 336


>gi|223036072|gb|ACM78689.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036074|gb|ACM78690.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 127/352 (36%), Positives = 188/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG +G + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKNGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036188|gb|ACM78747.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 128/352 (36%), Positives = 189/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHDCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R  R  +       + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCVEFYQTHFADHFYLELIRTGRADEEXYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEEXFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036020|gb|ACM78663.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036186|gb|ACM78746.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036234|gb|ACM78770.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036302|gb|ACM78804.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036352|gb|ACM78829.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 128/352 (36%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y  RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDDRLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036098|gb|ACM78702.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. SA0605-34]
          Length = 336

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 125/352 (35%), Positives = 188/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   GI+PIIG    +          Q       + 
Sbjct: 1   ALGMPAMALTDFTNLCGLVKFYGAAHGNGIKPIIGADFKM----------QSPEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + +L +   GY+ L  L+S+ YL    +    I   WL E+ +EGLI+L+G  +G I +
Sbjct: 51  QLTVLAADNTGYKNLTLLISKAYLRGHVQHQPVIDKEWLIEL-SEGLILLSGARNGEIGK 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + ++ E  +  +++ F DR Y+ L R    D        ++LA  ++LP+VATN 
Sbjct: 110 ALLKGNQKLVESCVAFYQQHFADRFYLELIRTGRSDEETYLHFAIELAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F+ +E ++AH++ +A+     +    RP   +P  YL+   EM  +F+D+PEALEN+V
Sbjct: 170 VVFIGQELFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F  +        E   L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLWEYFLPAFPTE-----GMAETEFLVMKSKEGLEERLEFLFPDPEIRAQ 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGS 336


>gi|223036080|gb|ACM78693.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036082|gb|ACM78694.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036084|gb|ACM78695.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  315 bits (807), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 128/352 (36%), Positives = 188/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRSEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223035968|gb|ACM78637.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036340|gb|ACM78823.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  315 bits (807), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 128/352 (36%), Positives = 188/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEELFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036056|gb|ACM78681.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  315 bits (807), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 128/352 (36%), Positives = 188/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLYFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|229220849|ref|YP_287921.2| DNA polymerase III PolC [Mycoplasma hyopneumoniae 7448]
 gi|144575503|gb|AAZ53898.2| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 7448]
          Length = 1469

 Score =  315 bits (807), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 156/933 (16%), Positives = 314/933 (33%), Gaps = 210/933 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + ++     G ++L +LVS     +       I    LQ+     L++ +GG    + +
Sbjct: 607  QLTIIAKNQIGIKKLYKLVSLANTENLI-SRPLIFYDHLQK--DPDLLIGSGGPESLLIQ 663

Query: 158  AFF-FNSSQVAE-KRLLTFKKLFGDRLYVNLQRHRGY--DRYRE--SQVVQLAYTHELPL 211
                F    VAE   +  F ++     +++L +   +  D+  +    ++ LA   ++P 
Sbjct: 664  TMLYFGPKNVAEFAHIFDFIEIPPPIAFIHLVKREIFTKDQIEDMLKNLINLAKKLQIPA 723

Query: 212  VATNNSLFLSEEDYEAHD-------------VLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            VA  +  +   ++   ++             VL           ++     P+ +  +  
Sbjct: 724  VAIGDVRYCLPKEKIFYELYIYAKGVGGVNHVLFDHREKEREDFRNSHIF-PEKHFFSTE 782

Query: 259  EMVSIFSDLPE-------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            E+   F  L +        ++N+  +A      +Q+   I         D  + + +  +
Sbjct: 783  ELKKEFEFLEDQQLIEEIVVKNSNFVADLIENNIQI---IKSGLYPPSFDSSEVKLKEFV 839

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
              KA                +  +    R+  EL  I    F   + I    +  AK   
Sbjct: 840  YKKAYEKYGR----------FLPKLIENRIKTELEPIINQGFHVVYWISKHIVTEAKSQG 889

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPL--------------------------------- 398
              V   RGS   S+ A+   ITD++PL                                 
Sbjct: 890  AIVD-SRGSVGSSIVAFLTGITDVNPLLPHYWCKKCSKVEFPKSQQFLSGYDLPDKNCLD 948

Query: 399  --------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
                      ++ FE FL  +   +PD D++F    + ++  +V+  +G  +  +  T  
Sbjct: 949  CYKKMDKDGHNIPFETFLGFNVEKVPDIDLNFSGQTQLKMHDFVRTLFGINKTFRAGTIL 1008

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            +   K     + R L    +++D         P   ++ +     S F +          
Sbjct: 1009 TNAEKTVYG-LARKLGEFRARLD---------PKFDLNREVSYFTSAFLDF--------- 1049

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPM---YRDVRSDLPVTQFNMKWIEK 565
               ++ K +G+ R +  HA GI++    + +    P+     + +SD   T F+   +  
Sbjct: 1050 ---LATKAQGVKRTSGKHAGGIIVIPQNQEIEDFTPINYPANNEKSDWKTTHFDYNALHD 1106

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT----------- 614
              L+K D LG    T+L         +        IP  D +   L  +           
Sbjct: 1107 -NLLKLDILGHDDPTILLHLEKLTNIKS-----DEIPKSDPKILSLFRSCKELGISSDQI 1160

Query: 615  ----KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
                 GT+GI +  +  +R+ L+  Q     DI+A+  L        +   N  K   EK
Sbjct: 1161 LGEVTGTIGIPEFGTQFVRKMLQIAQVKSFADIVAICGLAHGT---GVWQDNAEKLILEK 1217

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
               I+ LI             ++ +M       +    + +  + +R+  G   +E    
Sbjct: 1218 NHVINELIS-----------CRDDIMIYLLEKNIDHKVAFNIMENVRKGKGLTDQE---- 1262

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
                      K  +      + +    +   Y F K+HA AYA+ +++ A+ K ++P+ F
Sbjct: 1263 ----------KELLELKKVPSWYIESLQKIGYLFPKAHAVAYAMKAWKIAYFKLYHPLAF 1312

Query: 788  LAASMTLEMDNVE---------KIKKFCQ------------------------------- 807
             ++  ++  D  +         KI++                                  
Sbjct: 1313 YSSYFSIRPDVKDLETLIQPVEKIREKISILNKKRLESQKGIQQLSAKEKDLIQFLEISL 1372

Query: 808  DARQFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            + +    +I   S+        +    +N +     AI G+G   AR I++A   +PF S
Sbjct: 1373 ELKSRGFEIEKVSLEKSEAQEWIINKENNSLIPPFIAIDGIGDVNARKIVQARNLRPFSS 1432

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            +EDF  R ++   + + L+     G  D    S
Sbjct: 1433 IEDFEKRTETNSTSLKKLK---ELGIFDKISKS 1462



 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V +   +  S ++G  S    +     +   AI I D +++ +  EF     +  I+PI 
Sbjct: 323 VEIAARTWKSTMDGISSAKEYVQYALKNGYLAIGIADLDSVQAFPEFYNAIKSTNIKPIY 382

Query: 72  GCQL 75
           G   
Sbjct: 383 GSTF 386


>gi|221316507|ref|ZP_03598312.1| hypothetical protein BsubsN3_22609 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
          Length = 731

 Score =  314 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 148/649 (22%), Positives = 272/649 (41%), Gaps = 62/649 (9%)

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN----VIARMK--FSGYF 357
           + + +    +    G+          K    ++   R++ EL+    +   +    S YF
Sbjct: 6   RYDIDRYYLHLIAEGM-------VAKKQDLNKENLSRINTELDELYHITENLGQPLSSYF 58

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           ++  D +    + +  VG  RGS       Y L I  ++P++F+L   RFL+ +R  +PD
Sbjct: 59  VLSKDVVDLMWQVS-LVGVSRGSACCFYLNYLLDIVQLNPIKFNLPHWRFLSKERPELPD 117

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            D+D    +R E+I+  ++ YG E V  + TF +   ++ +    R L +       +  
Sbjct: 118 IDLDSEGSKRHEIIQITKDHYGEENVLNMGTFTTEGTRSTVLTSCRGLGIDKDIAHNIAN 177

Query: 478 LIPNDPAHPVSLQAI------ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
           LIP       SL               +E        + L E    +EGL      HA+G
Sbjct: 178 LIPTRKGGIWSLHECFYGNPKEGTKPAKEFCREVDKYEGLKEAMLSIEGLISGRGQHASG 237

Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
           ++I      +   M +   S LP+TQF+ +     G +K D+L +  L  ++ +LD L +
Sbjct: 238 VIIFPDGYIKQNAMMK-TTSGLPITQFDAEDSIYMGGLKLDYLSINALDRIRTALDLLLE 296

Query: 592 R-------------GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                                ++  +  + + LL     L  FQ E++  +QAL  + P 
Sbjct: 297 HGKIEWQGSLRATYNKYFHPDVLEMESPKMFDLLFKGHVLNAFQFETAVGQQALTKINPR 356

Query: 639 CIEDIIALVSLYR-----PGPIDNIVVY-NNRKNGKEKIVSI------HPLIDPMLKETQ 686
             +++ A  SL R       P+D  V + NN ++  E++ +         +++  L +  
Sbjct: 357 SFDELCAGNSLMRLSTDGEQPLDKYVRFKNNIQDWYEEMKTAGLNEEEIKILEEHLLDRY 416

Query: 687 GVIIYQEQVMQIAQL--LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
           G+   QE +M +A    ++G+SL++A+  R+A+ K  ++ ++ Q+ +F  G  K G  K 
Sbjct: 417 GICDTQEGLMLLAMDERIAGFSLTQANKFRKAVAKANQKLIEDQRIKFYEGGEKTGARKV 476

Query: 745 IAVNIF-ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL-AASMTLEMDN---V 799
               ++ + L     Y F+  H A Y +I      +   Y   +   A +++        
Sbjct: 477 FLDYVWNKELKPQFGYSFSLPHIAGYTMILMIEMNICHRYGAIYWKTACLSVNAGMIGET 536

Query: 800 EKIKKFCQDAR---QFNIQIMPPSVNTPCVDFKV--GDNRIYYSLAAIKGVGTTTARHIM 854
           EK  K+   A+        I+ P +N    +F     +N+I + L  I G+GT     I+
Sbjct: 537 EKGTKYGAIAKAVGDMKGDILNPDINLSNKEFTPLEEENKILFGLKPIAGLGTDAIEKII 596

Query: 855 EASADKPFDSLEDFCSR-VDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
           E     P+ S  DF  + VD   ++   + SL+ AG  D F  +R  L+
Sbjct: 597 EHR---PYKSFGDFFKKIVDPGLISEAKVVSLIKAGCFDSFYPNRRLLM 642


>gi|223036038|gb|ACM78672.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036170|gb|ACM78738.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  314 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 128/352 (36%), Positives = 188/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAELYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPDVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036014|gb|ACM78660.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036332|gb|ACM78819.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  314 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 127/352 (36%), Positives = 188/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFIL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036036|gb|ACM78671.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  314 bits (806), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 127/352 (36%), Positives = 188/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F +  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFAEHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036224|gb|ACM78765.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036336|gb|ACM78821.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  314 bits (806), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 127/352 (36%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG  G + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKRGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036220|gb|ACM78763.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036232|gb|ACM78769.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036238|gb|ACM78772.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036250|gb|ACM78778.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036292|gb|ACM78799.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036322|gb|ACM78814.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036328|gb|ACM78817.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036348|gb|ACM78827.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  314 bits (806), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 128/352 (36%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++  EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEVEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223035970|gb|ACM78638.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035974|gb|ACM78640.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035988|gb|ACM78647.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036030|gb|ACM78668.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036152|gb|ACM78729.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036274|gb|ACM78790.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036276|gb|ACM78791.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036362|gb|ACM78834.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036372|gb|ACM78839.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036374|gb|ACM78840.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  314 bits (806), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 127/352 (36%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG  G + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKRGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|312271562|gb|ADQ56136.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. HB0308-1A5]
          Length = 336

 Score =  314 bits (805), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 132/352 (37%), Positives = 190/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   GI+PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGIKPIIGADFML----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    +  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNIGYKNLTLLISKAYLRGHVQHQPVLDKAWLIE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  EK L  ++  F D  Y+ L R    D        ++LA  +ELP+VATN 
Sbjct: 110 ALLKGNQQQVEKCLEFYQTHFADHFYLELIRTGRADEESYLHFALELAELYELPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL+  +EM  +F+D+PEALEN+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRTEAEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F  +         E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTE-----GMAIEDFLVMKSREGLEDRLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036150|gb|ACM78728.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 128/352 (36%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNIGYKNLTLLISKAYLRGHVQHQPVIDKTWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL++  EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEVEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|304373374|ref|YP_003856583.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
 gi|304309565|gb|ADM22045.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
          Length = 1457

 Score =  313 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 159/905 (17%), Positives = 316/905 (34%), Gaps = 162/905 (17%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I ++V   +G + L +LVS     D       +    +  + +  L+  T G    +   
Sbjct: 601  IRVIVKNQQGLKELFKLVSLSNT-DNFLSKPLLFYDKI--LPSNNLLWGTSGLDSQLMEI 657

Query: 159  FFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYR----ESQVVQLAYTHELPLV 212
             F+N     E  +  F   ++     +++L +     +         V++LA  H+  +V
Sbjct: 658  LFYNHHNDLETLIKKFDFIEIPTPSSFIHLIKRNKIKKEDIIKGLKLVIELARKHKKLIV 717

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAH--STVVS------QKDRPRVTPDHYLKNRSEMVSIF 264
            A++   ++++ED   H V +          +       K    + P  Y     E+ + F
Sbjct: 718  ASSEPRYINKEDKIFHLVYIYAKGVGGKPHNLFGGDTDKKEDHIFPTKYFMTTQELKAEF 777

Query: 265  SDLPE---ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
            + L +     E  V    + + +++    I  +    + DD   + ++ +  KA      
Sbjct: 778  AFLEDQDLIDEIVVRNPNKIADLVEQVQVIKDKLYPPKFDDSASKIKHLVYQKAHEKYGE 837

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
             L                R++ ELN I    +   + I  + +  AK     VG  RGS 
Sbjct: 838  NL----------PDQIALRIEKELNPIIDNGYDVVYWISKELVDKAKSEGQKVG-SRGSV 886

Query: 382  AGSVTAYALTITDIDPLRF----------------------------------------- 400
              SV AY + IT+++PL                                           
Sbjct: 887  GSSVVAYLIGITEVNPLEPHYVCNQCKNVKFSTDSNVLSGFDLKDKKCKTCNILYDKDGQ 946

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            ++ FE FL      +PD D++F  D + +   Y++  +G +   +  T      K+A   
Sbjct: 947  NIPFETFLGFKADKVPDIDLNFAGDFQVQTHNYIRELFGEKFTFRAGTILGYAEKSAF-- 1004

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                          L K + N+    + L    ++  F  +  ++  +D L   + K  G
Sbjct: 1005 -------------SLAKKL-NEIQTRLYLNEHPNEYEF--SMYSNTFLDFL---ATKTSG 1045

Query: 521  LYRHASTHAAGIVIGDRPLS--QLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + +    H  GI++    L   +  P+     D  SD   T F+ + I    ++KFD LG
Sbjct: 1046 VKKTTGQHPGGIIVIPNDLEIEEFTPINFPANDDNSDWKTTHFDFENIHD-NVLKFDLLG 1104

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
                 ++++       +        IP  D +   L ++   L I   +  G +    G+
Sbjct: 1105 HDDPIMVRELEKLTNTKV-----ENIPKSDPKIIKLFSSLEPLNIDSKDLPGEQNGARGL 1159

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI-VSIHPLIDPMLKETQGVIIYQEQ 694
                   +  +++  R     +++  +   +G      +   LI       + VI  ++ 
Sbjct: 1160 PEFGTSFVRRMLNTARVESFSDLIKVSGLSHGTNVWQDNAETLISQHNLTLRDVISCRDD 1219

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL-L 753
            +M         SL   ++            M+  ++       +  I +   V I+ +  
Sbjct: 1220 IMLYLINKGVDSLVSFNI------------MESVRKGKSITVEQQQILENHNVPIWYIES 1267

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV-------------- 799
             K   Y F K+HAAAY +++++  + K +YP+ F +   ++ +D                
Sbjct: 1268 LKKIKYMFPKAHAAAYVLMAWRITYYKLYYPLAFYSVYFSIRIDFKNIDALLLPKQQLSS 1327

Query: 800  ------------------EKIKKFC------QDARQFNIQIMPPSVNTPCVDFKV---GD 832
                              EK KK        ++ +    +I   ++N       V    +
Sbjct: 1328 QIMALKQRENSKKEDKLSEKEKKLIPILEVAEELKARGFEIEKINLNLSQATQWVINEEN 1387

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            N +    +++ G+G   A  I+ A  +K F S+EDF  R     +N  V++ L   G   
Sbjct: 1388 NSLIPPFSSLDGIGEANAAKIIAARTEKSFSSIEDFEKRA---GVNSTVIKKLKDMGVFK 1444

Query: 893  CFGYS 897
                +
Sbjct: 1445 DLSET 1449



 Score = 63.1 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 32/98 (32%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L   +  S ++G  +  + +         AI I+D  ++ +  +F      A I+ I 
Sbjct: 317 VELFARTKMSTMDGVTNAQDYVKIAKLLGHSAIGISDLESVQAFPDFYFACKNAKIKAIY 376

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
           G           K+ N  +         V+      G 
Sbjct: 377 GSTFSTTHSKIFKVLNLRQNQDLEHARYVVFDLETTGL 414


>gi|223036032|gb|ACM78669.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. PS0705-4B2]
          Length = 336

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 130/352 (36%), Positives = 189/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
               PA+A+TD  NL   ++F   A  +G++PIIG    +          Q       + 
Sbjct: 1   ELGMPAMALTDFTNLCGLVKFYGTAHGSGVKPIIGADFKM----------QSDEFGEELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL +   GY+ L  L+S+ YL    +    I  +WL E+ +EGLI+L+GG SG I R
Sbjct: 51  QVTLLAADNVGYKNLTLLISKAYLRGHVQHHPVIDKAWLAEM-SEGLIVLSGGKSGEIGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
                + Q+ +  +  +K+ F DR Y+ L R    D        V+LA   +LP+VATN 
Sbjct: 110 GLLKGNRQIVQGCVDFYKQHFPDRFYLELLRTGRPDEETYLHFAVELAEQQDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +FLS + ++AHD+ +A+     +    RP   +P  YL+   EM  +F+D+PEALEN+V
Sbjct: 170 VVFLSPDLFDAHDIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F  +       +E   L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPAFPTE-----GMKETEFLVMKSREGLEERLEFLFPDEEERKR 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGS 336


>gi|223036124|gb|ACM78715.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. SA0706-05S]
          Length = 336

 Score =  313 bits (802), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 127/352 (36%), Positives = 189/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
               PA+A+TD  NL   ++F   A  +G++PIIG    +          Q       + 
Sbjct: 1   ELGMPAMALTDFTNLCGLVKFYGTAHGSGVKPIIGADFKM----------QSDEFGEELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + +L +   GY+ L  L+S+ YL    +    I  +WL E+ +EGLI+L+G  +G I +
Sbjct: 51  QLTVLAADNAGYKNLTLLISKAYLRGHVQHQPVIDRAWLAEM-SEGLIVLSGAKNGDIGK 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + ++ E  +  +K+ F DR Y+ L R    D        + LA  H+LP+VATN 
Sbjct: 110 ALLKGNRKLVESCVEFYKQHFPDRFYLELIRTGRPDEETYLHFAIDLAEQHDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +FLS + ++AH++ +A+     +    RP   +P  YL+   EM  +F+D+PEALEN+V
Sbjct: 170 VVFLSADLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F  +       EE   L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPAFPTE-----GMEETEFLVMKSREGLEERLEFLFPDEEERKK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGAGS 336


>gi|223036106|gb|ACM78706.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. SA0606-03S]
 gi|223036114|gb|ACM78710.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. SA0606-63]
          Length = 336

 Score =  313 bits (802), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 127/352 (36%), Positives = 189/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
               PA+A+TD  NL   ++F   A  +G++PIIG    +          Q       + 
Sbjct: 1   ELGMPAMALTDFTNLCGLVKFYGTAHGSGVKPIIGADFKM----------QSDEFGEELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + +L +   GY+ L  L+S+ YL    +    I  +WL E+ +EGLI+L+G  +G I +
Sbjct: 51  QLTVLAADNAGYKNLTLLISKAYLRGHVQHQPVIDRAWLAEM-SEGLIVLSGAKNGDIGK 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + ++ E  +  +K+ F DR Y+ L R    D        + LA  H+LP+VATN 
Sbjct: 110 ALLKGNRKLVESCVEFYKQHFQDRFYLELIRTGRPDEETYLHFAIDLAEQHDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +FLS + ++AH++ +A+     +    RP   +P  YL+   EM  +F+D+PEALEN+V
Sbjct: 170 VVFLSADLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F  +       EE   L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPAFPTE-----GMEETEFLVMKSREGLEERLEFLFPNEEERKK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGAGS 336


>gi|85057593|ref|YP_456509.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
            phytoplasma AYWB]
 gi|84789698|gb|ABC65430.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
            phytoplasma AYWB]
          Length = 1572

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 152/978 (15%), Positives = 312/978 (31%), Gaps = 233/978 (23%)

Query: 83   LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
             ++  +    +     I +LV+   GY+ L EL+S     D   +  R+  S L  +  +
Sbjct: 661  FELQEKIDHKYERPYHINILVANQTGYRNLFELLSNALTKD-FNKRPRVLKSNLANL-RQ 718

Query: 143  GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYD-----RY 195
            GL++ +G  +  I       +    ++ +  +   ++   + Y +L    G +       
Sbjct: 719  GLLVGSGCMNSNIFEIALNQNIFKLQRAISFYDYIEVQPPQAYKHLIHDLGKNGIQIIET 778

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM---AVAHSTVVSQKDRPRVTPDH 252
                ++  A      ++AT +  ++   + +  ++ +    V        +   +  P++
Sbjct: 779  TLKTIITEAQKQAKIVIATGDVHYIHPWEKDYREIYISAKMVGGGLHKLSRYENKNLPEN 838

Query: 253  YLKNRSEMVSIFSDLPE-------ALENTVEIARRCS----FILQVHAPILPRFIEKECD 301
            +L    EM+  F+ L +        + NT  +  +      F  ++ +     F +    
Sbjct: 839  HLLTTQEMIDAFAFLHDENLIYKIVISNTHLLNSKIEKIKSFSSELFSFKDDAFKKNLQI 898

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA--------RMKF 353
               KEE   L +      +V+   G+          ++RLD EL  I             
Sbjct: 899  PSIKEEIKRLVD-----AKVKQMYGSPPH----PLIKKRLDQELKSIIGETKNEKTNQNI 949

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF--------- 404
            +  + +    ++ +      VG  RGS   S+ A  L IT+++PL+              
Sbjct: 950  APVYYLSHLLVKNSLAKGYLVG-SRGSIGSSLVATMLEITEVNPLKPHYYCPQCNYTIVQ 1008

Query: 405  --------------------ERFLNPDRMSMPDFDI------------------------ 420
                                E         +P+                           
Sbjct: 1009 LKKPQEKEQYYKPEEEKYHKELDNVFSGYDLPNMPCPKCNAQFKKNGHDIPFETFLGFEG 1068

Query: 421  --------DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
                    +F  D + +   Y++   G +   +  T  ++  + A    G  +     + 
Sbjct: 1069 NKTPDIDLNFAGDYQSQAHNYIKELLGEKHAFRAGTIQTVAQRNAY---GYTMGFVEEKQ 1125

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
             +  K                                ++ +I+ K++G+ R    H  GI
Sbjct: 1126 KQWRK-------------------------------QKVAQIANKIQGVKRSNGQHPGGI 1154

Query: 533  VIG--DRPLSQLVPMYRDVRS-DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            V+   DR + ++ P+       +   T F+    E+  L K D LG     +++  +D++
Sbjct: 1155 VVVPPDRSIYEVTPVQYPANDTNWKTTHFDYHSFEQ-NLFKLDILGHDDPMMIKFLMDYV 1213

Query: 590  AQ---RGVKVDLSLIPFDDHETYHLLTT---------------KGTLGIFQLESSGMRQA 631
             +            IP DD E Y L +                  +LGI +  +  ++Q 
Sbjct: 1214 KENSGNFPFTRAQDIPVDDPEVYKLFSNEFKINSSVNSGNKITIDSLGIPEFGTIFVKQM 1273

Query: 632  LEGMQPD-----------CIEDIIALVSLYRPGPIDNIVVYNNR----KNGK-EKIVSIH 675
            L+ +                  ++ +  L       ++   N R    K G+ EK  +  
Sbjct: 1274 LKDLTTTKQNSQKKAIKINFAALVKISGLSHGT---DVWNQNARDAINKTGEFEKYKNKT 1330

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               D ++         ++ +M   Q   G    +A  +   + K         ++ F + 
Sbjct: 1331 ISFDDIIG-------CRDDIMLQLQ-EKGIDPLKAFDIMEFIRKGKP------QDDFQTW 1376

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                   K      +   A    Y F K+HA AY +++ + AW K H P+ F +   +  
Sbjct: 1377 KKYKQEMKDKVEAWYIDSAAKIKYLFPKAHATAYVIMALRIAWFKMHAPLAFYSGYFSKR 1436

Query: 796  MDNVE-----------------KIK-------------------KFCQDARQFNIQIMPP 819
             +  +                 K+                    K  ++      + +  
Sbjct: 1437 TEQFDHQTMISNDIKIIKEKLNKLAELKKSKKIKAKEEALINTLKIAEEMVHRGFKFLTV 1496

Query: 820  SVNTPCVD-FKVGDNRI-YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
              N   V   K+ D       L ++ G+G   A  I+EA  +KPF    DF +R    K+
Sbjct: 1497 DFNKSDVSVLKIEDGGFLRMPLLSLDGLGLIAANKIVEARQEKPFT-KADFATR---SKI 1552

Query: 878  NRRVLESLVFAGALDCFG 895
            N+ +L        L+   
Sbjct: 1553 NKTILAKAKQENLLESLE 1570



 Score = 63.1 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 37/80 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +    H+  S L+   S    L    +    AIA TD + +++  E +Q +    I+PI 
Sbjct: 389 IEFHTHTKMSNLDAINSAKEYLQIAESWGHEAIAFTDHDGIYAYPEINQHSKNKKIKPIY 448

Query: 72  GCQLDIDMQDNLKMTNQGKT 91
           G ++D   +  + +TNQ + 
Sbjct: 449 GVEVDFIEEKPIYITNQKED 468


>gi|223036000|gb|ACM78653.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. L8M]
 gi|312271564|gb|ADQ56137.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. HB0308-2A5]
 gi|312271568|gb|ADQ56139.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. HB0308-1A6]
          Length = 336

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 131/352 (37%), Positives = 190/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   GI+PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGIKPIIGADFML----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    +  +WL +  TEGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNIGYKNLTLLISKAYLRGHVQHQPVLDKAWLID-HTEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  EK L  ++  F D  Y+ L R    D        + +A  +ELP+VATN 
Sbjct: 110 ALLKGNQQQVEKCLEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYELPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL+  +EM  +F+D+PEALEN+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRTEAEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F  +         E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTE-----GMAIEDFLVMKSREGLEDRLEFLFPDPEVRAQ 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 SRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223035992|gb|ACM78649.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. K0406-01S]
          Length = 336

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 129/352 (36%), Positives = 189/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
               PA+A+TD  NL   ++F   A  +G++PIIG    +          Q       + 
Sbjct: 1   ELGMPAMALTDFTNLCGLVKFYGTAHGSGVKPIIGADFKM----------QSDEFGEELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL +   GY+ L  L+S+ YL    +    I  +WL E+ +EGLI+L+GG SG I R
Sbjct: 51  QVTLLAADNVGYKNLTLLISKAYLRGHVQHYPVIDKAWLAEM-SEGLIVLSGGKSGEIGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
                + Q+ +  +  +K+ F DR Y+ L R    D        V+LA   +LP+VATN 
Sbjct: 110 GLLKGNRQIVQGCVDFYKQHFPDRFYLELLRTGRPDEETYLHFAVELAEQQDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +FLS + ++AH++ +A+     +    RP   +P  YL+   EM  +F+D+PEALEN+V
Sbjct: 170 VVFLSPDLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F  +       +E   L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPAFPTE-----GMKETEFLVMKSREGLEERLEFLFPDEEERKR 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGS 336


>gi|312271566|gb|ADQ56138.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. HB0308-1B5]
          Length = 336

 Score =  312 bits (800), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 130/352 (36%), Positives = 189/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   GI+PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGIKPIIGADFML----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    +  +WL +   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNIGYKNLTLLISKAYLRGHVQHQPVLDKAWLID-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  EK L  ++  F D  Y+ L R    D        + +A  +ELP+VATN 
Sbjct: 110 ALLKGNQQQVEKCLEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYELPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP   +P  YL+  +EM  +F+D+PEALEN+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRTEAEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F  +         E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPNFPTE-----GMAIEDFLVMKSREGLEDRLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|330723726|gb|AEC46096.1| DNA polymerase III PolC [Mycoplasma hyorhinis MCLD]
          Length = 1457

 Score =  312 bits (800), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 159/905 (17%), Positives = 317/905 (35%), Gaps = 162/905 (17%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I ++V   +G + L +LVS     D       +    +  + +  L+  T G    +   
Sbjct: 601  IRVIVKNQQGLKELFKLVSLSNT-DNFLSKPLLFYDKI--LPSNNLLWGTSGLDSQLMEI 657

Query: 159  FFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYR----ESQVVQLAYTHELPLV 212
             F+N     E  +  F   ++     +++L +     +         V++LA  H+  +V
Sbjct: 658  LFYNHHNDLETFIKKFDFIEIPTPSSFIHLIKRNKIKKEDIIKGLKLVIELARKHKKLIV 717

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAH--STVVS------QKDRPRVTPDHYLKNRSEMVSIF 264
            A++   ++++ED   H V +          +       K    + P  Y     E+ + F
Sbjct: 718  ASSEPRYINKEDKIFHLVYIYAKGVGGKPHNLFGGDTDKKEDHIFPTKYFMTTQELKAEF 777

Query: 265  SDLPE---ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
            + L +     E  V    + + +++    I  +    + DD   + ++ +  KA      
Sbjct: 778  AFLEDQDLIDEIVVRNPNKIADLVEQVQVIKDKLYPPKFDDSASKIKHLVYQKAHEKYGE 837

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
             L                R++ ELN I    +   + I  + +  AK     VG  RGS 
Sbjct: 838  NL----------PDQIALRIEKELNPIIDNGYDVVYWISKELVDKAKSEGQKVG-SRGSV 886

Query: 382  AGSVTAYALTITDIDPLRF----------------------------------------- 400
              SV AY + IT+++PL                                           
Sbjct: 887  GSSVVAYLIGITEVNPLEPHYVCNQCKNVKFSTDSNVLSGFDLKDKKCKTCNILYDKDGQ 946

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            ++ FE FL      +PD D++F  D + +   Y++  +G +   +  T      K+A   
Sbjct: 947  NIPFETFLGFKADKVPDIDLNFAGDFQVQTHNYIRELFGEKFTFRAGTILGYAEKSAF-- 1004

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                          L K + N+    + L    ++  F  +  ++  +D L   + K  G
Sbjct: 1005 -------------SLAKKL-NEIQTRLYLNEHPNEYEF--SMYSNTFLDFL---ATKTSG 1045

Query: 521  LYRHASTHAAGIVI--GDRPLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + +    H  GI++   D  + +  P+     D  SD   T F+ + I    ++KFD LG
Sbjct: 1046 VKKTTGQHPGGIIVILNDLEIEEFTPINFPANDDNSDWKTTHFDFENIHD-NVLKFDLLG 1104

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
                 ++++       +        IP  D +   L ++   L I   +  G +    G+
Sbjct: 1105 HDDPIMVRELEKLTNTKV-----ENIPKSDPKIIKLFSSLEPLNIDSKDLPGEQNGARGL 1159

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI-VSIHPLIDPMLKETQGVIIYQEQ 694
                   +  +++  R     +++  +   +G      +   LI       + VI  ++ 
Sbjct: 1160 PEFGTSFVRRMLNTARVESFSDLIKVSGLSHGTNVWQDNAEALISQHNLTLRDVISCRDD 1219

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL-L 753
            +M         SL   ++            M+  ++       +  I +   V I+ +  
Sbjct: 1220 IMLYLINKGVDSLVSFNI------------MESVRKGKSITVEQQQILENHNVPIWYIES 1267

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV-------------- 799
             K   Y F K+HAAAY +++++  + K +YP+ F +   ++ +D                
Sbjct: 1268 LKKIKYMFPKAHAAAYVLMAWRITYYKLYYPLAFYSVYFSIRIDFKNIDALLLPKQQLSS 1327

Query: 800  ------------------EKIKKFC------QDARQFNIQIMPPSVNTPCVDFKV---GD 832
                              EK KK        ++ +    +I   ++N       V    +
Sbjct: 1328 QIMALKQRENSKKEDKLSEKEKKLIPILEVAEELKARGFEIEKINLNLSQATQWVINEEN 1387

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            N +    +++ G+G   A  I+ A  +K F S+EDF  R     +N  V++ L   G   
Sbjct: 1388 NSLIPPFSSLDGIGEANAAKIIAARTEKSFSSIEDFEKRA---GVNSTVIKKLKDMGVFK 1444

Query: 893  CFGYS 897
                +
Sbjct: 1445 DLSET 1449



 Score = 63.1 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 32/98 (32%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L   +  S ++G  +  + +         AI I+D  ++ +  +F      A I+ I 
Sbjct: 317 VELFARTKMSTMDGVTNAQDYVKIAKLLGHSAIGISDLESVQAFPDFYFACKNAKIKAIY 376

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
           G           K+ N  +         V+      G 
Sbjct: 377 GSTFSTTHSKIFKVLNLRQNQDLEHARYVVFDLETTGL 414


>gi|223035996|gb|ACM78651.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. K0706-35]
          Length = 336

 Score =  312 bits (800), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 129/352 (36%), Positives = 189/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
               PA+A+TD  NL   ++F   A  +G++PIIG    +          Q       + 
Sbjct: 1   ELGMPAMALTDFTNLCGLVKFYGTAHGSGVKPIIGADFKM----------QSDEFGEELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL +   GY+ L  L+S+ YL    +    I  +WL E+ +EGLI+L+GG SG I R
Sbjct: 51  QVTLLAADNVGYKNLTLLISKAYLRGHVQHHPVIDKAWLAEM-SEGLIVLSGGKSGEIGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
                + Q+ +  +  +K+ F DR Y+ L R    D        V+LA   +LP+VATN 
Sbjct: 110 GLLKGNRQIVQGCVDFYKQHFPDRFYLELLRTGRPDEETYLHFAVELAEQQDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +FLS + ++AH++ +A+     +    RP   +P  YL+   EM  +F+D+PEALEN+V
Sbjct: 170 VVFLSPDLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F  +       +E   L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPAFPTE-----GMKETEFLVMKSREGLEERLEFLFPDEEERKR 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGS 336


>gi|260888664|ref|ZP_05899927.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC
           35185]
 gi|330839925|ref|YP_004414505.1| DNA polymerase III alpha subunit [Selenomonas sputigena ATCC 35185]
 gi|260861596|gb|EEX76096.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC
           35185]
 gi|329747689|gb|AEC01046.1| DNA polymerase III alpha subunit [Selenomonas sputigena ATCC 35185]
          Length = 831

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 153/850 (18%), Positives = 295/850 (34%), Gaps = 157/850 (18%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH+  S +E  LS+  +L   AA    A+A+TD + +    +  + A   G++ I 
Sbjct: 18  VELSVHTQMSEMESVLSVRELLRTAAAWGWKAVAVTDHDVVQVFPDAMKIAARLGVKVIY 77

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G    +  +D       GK   P    I +L    +G   L ELV+  +  +       I
Sbjct: 78  GMDGSMAQED-------GKESIP--YRISMLAKNKKGLLHLYELVTLSH-RNVFHHQPHI 127

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ---VAEKRLLTFKKLFGDRLYVNLQ- 187
                 E+  EGL++ + G+ G + RA     S    +A      + ++     YV L  
Sbjct: 128 PKRVFHEL-REGLLLGSAGAEGGLVRAIAAAKSDDEILAIANFYDYLEIQPAENYVGLIA 186

Query: 188 -----RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                  +  +  R    ++V+++      LVAT +  +L+ ED     VL+  A     
Sbjct: 187 DETFSCIQSEEDVRNIHRKIVEISKRTGKILVATGDVHYLNPEDAFCRRVLLNAAGKKDD 246

Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE- 297
                       +L+   EM+  FS L +  A E  +  + R + ++    P   + +  
Sbjct: 247 D------TQSSRFLRTTEEMLQNFSHLGKEAAYEAVITGSNRIADLMDEIDPSYEKCLPQ 300

Query: 298 -KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                DI K   +  +   + G                +  ++RL+ EL VI   ++S  
Sbjct: 301 IPHAHDIIKS-MSYDKATELYG------------RNLPRIVQERLEQELAVILEHEYSSL 347

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------- 399
           +L+    +Q A ++   +    GS   S+ A+ + IT+++PL                  
Sbjct: 348 YLLPQKLVQKAHEDG-HITCTNGSIGASLAAHLIGITEVNPLPPHWRCAKCQYSQFITDG 406

Query: 400 ------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                     + +   +  D    PD  + +    R      ++
Sbjct: 407 SVASGFNLQANICPQCGETLLGDGHDIPYAALVGFDGSRQPDIVMSYPDSYRSIAAENIE 466

Query: 436 NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
             +   RV    T  ++    A+  +  A        DR+   IP               
Sbjct: 467 KVWERVRVYPAGTIETISYDEAVAYIQNA----LDTTDRIPVGIP--------------- 507

Query: 496 SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDVRSD- 552
                          + +++++  G  +    + +  +I          +P+      + 
Sbjct: 508 ---------------MQDVAEQCVGTKKAMGINDSAFIILPEDAEPGFFLPLQDVSDQEG 552

Query: 553 --LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
               +  F+ + +     +K + L    L+LL+K      +RG    LS IPFDD     
Sbjct: 553 HTYRIPHFSYQNLTNH-FLKLNLLRYFVLSLLEKL-----ERGTGCSLSNIPFDDPSAIS 606

Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
           L     T+GI +  S  +RQ L+ +QP    +++ + +             N +K     
Sbjct: 607 LFRKADTVGIPEFHSPKVRQMLQELQPRFFSELVKISAFSHGTGAWEG---NAQK----- 658

Query: 671 IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
                 LI   +     V   ++ VM +  +  G     A  +  ++ K           
Sbjct: 659 ------LISRGVCTLNEVAATRDDVM-MYLIRKGIDPLRAFQIMESVRKGNG-------- 703

Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             I   +   + +    + +    +   Y F ++H   + + +Y+ A+ K H+P EF  A
Sbjct: 704 --ILPKTIKILQEKGVPSWYIQSCQKMGYMFPRAHVVDHVMSNYRLAYYKAHHPQEFYRA 761

Query: 791 SMTLEMDNVE 800
            +    D  +
Sbjct: 762 YIETMADASD 771


>gi|223035994|gb|ACM78650.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. K0606-41]
          Length = 336

 Score =  311 bits (796), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 128/352 (36%), Positives = 189/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
               PA+A+TD  NL   ++F   A  +G++PIIG    +          Q       + 
Sbjct: 1   ELGMPAMALTDFTNLCGLVKFYGTAHGSGVKPIIGADFKM----------QSDEFGEELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL +   GY+ L  L+S+ YL    +    I  +WL ++ +EGLI+L+GG SG I R
Sbjct: 51  QVTLLAADNVGYKNLTLLISKAYLRGHVQHHPVIDKAWLAKM-SEGLIVLSGGKSGEIGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
                + Q+ +  +  +K+ F DR Y+ L R    D        V+LA   +LP+VATN 
Sbjct: 110 GLLKGNRQIVQGCVDFYKQHFPDRFYLELLRTGRPDEETYLHFAVELAEQQDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +FLS + ++AH++ +A+     +    RP   +P  YL+   EM  +F+D+PEALEN+V
Sbjct: 170 VVFLSPDLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F  +       +E   L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPAFPTE-----GMKETEFLVMKSREGLEERLEFLFPDEEERKR 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGS 336


>gi|112959021|gb|ABI27000.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959024|gb|ABI27002.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959027|gb|ABI27004.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959030|gb|ABI27006.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959033|gb|ABI27008.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959036|gb|ABI27010.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959039|gb|ABI27012.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959042|gb|ABI27014.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959048|gb|ABI27018.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959051|gb|ABI27020.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959054|gb|ABI27022.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959057|gb|ABI27024.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959060|gb|ABI27026.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959063|gb|ABI27028.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959066|gb|ABI27030.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959069|gb|ABI27032.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959072|gb|ABI27034.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959075|gb|ABI27036.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959078|gb|ABI27038.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959081|gb|ABI27040.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959084|gb|ABI27042.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959087|gb|ABI27044.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959090|gb|ABI27046.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959093|gb|ABI27048.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959096|gb|ABI27050.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959099|gb|ABI27052.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959102|gb|ABI27054.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959105|gb|ABI27056.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959111|gb|ABI27060.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959114|gb|ABI27062.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959117|gb|ABI27064.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959120|gb|ABI27066.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959123|gb|ABI27068.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959126|gb|ABI27070.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959129|gb|ABI27072.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959132|gb|ABI27074.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959135|gb|ABI27076.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959138|gb|ABI27078.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959141|gb|ABI27080.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959144|gb|ABI27082.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959147|gb|ABI27084.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959150|gb|ABI27086.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959153|gb|ABI27088.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959156|gb|ABI27090.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959159|gb|ABI27092.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959162|gb|ABI27094.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959165|gb|ABI27096.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959168|gb|ABI27098.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959171|gb|ABI27100.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959174|gb|ABI27102.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959177|gb|ABI27104.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959180|gb|ABI27106.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959183|gb|ABI27108.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959186|gb|ABI27110.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959189|gb|ABI27112.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959192|gb|ABI27114.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959195|gb|ABI27116.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959198|gb|ABI27118.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959201|gb|ABI27120.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
          Length = 441

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 106/332 (31%), Positives = 182/332 (54%), Gaps = 7/332 (2%)

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S   A  +++++ +FA+YGFN+
Sbjct: 1    GFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNR 60

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +A+ + I ++ PS+N 
Sbjct: 61   SHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINH 120

Query: 824  PCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                F+V +     YS   I+ V T     I+      PF    DFC R+  K L+  VL
Sbjct: 121  SNYYFQVENESSIRYSFRVIRKVPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVL 180

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLE 941
            E+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+FA +       K    
Sbjct: 181  EALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYR 238

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            K +  +   + E E+   G Y S HP+  Y+  L+ + I       +   G N ++AA V
Sbjct: 239  KTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYV 295

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 296  HEVKSIRTKKGETMCFLTISDDSKELSAVMFP 327


>gi|223036026|gb|ACM78666.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. PS0705-3A4]
          Length = 336

 Score =  310 bits (795), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 128/352 (36%), Positives = 189/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
               PA+A+TD  NL   ++F   A ++G++PIIG    +          Q       + 
Sbjct: 1   ELGMPAMALTDFTNLCGLVKFYGTAHSSGVKPIIGADFKM----------QSDEFGEELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL +   GY+ L  L+S+ YL    +    I  +WL E+ +EGLI+L+GG SG I R
Sbjct: 51  QVTLLAADNVGYKNLTLLISKAYLRGHVQHHPVIDKAWLAEM-SEGLIVLSGGKSGEIGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
                + Q+ +  +  +K+ F DR Y+ L R    D        V+LA   +LP+VATN 
Sbjct: 110 GLLKGNRQIVQGCVDFYKQHFPDRFYLELLRTGRPDEETYLHFAVELAEQQDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +FLS + ++AH++ +A+     +    RP   +   YL+   EM  +F+D+PEALEN+V
Sbjct: 170 VVFLSPDLFDAHEIRVAIHDGYTLEDPRRPKNYSQQQYLRTEEEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F  +       +E   L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPAFPTE-----GMKETEFLVMKSREGLEERLEFLFPDEEERKR 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGS 336


>gi|313678200|ref|YP_004055940.1| DNA polymerase III subunit alpha [Mycoplasma bovis PG45]
 gi|312950476|gb|ADR25071.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            bovis PG45]
          Length = 1458

 Score =  310 bits (794), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 150/903 (16%), Positives = 313/903 (34%), Gaps = 181/903 (20%)

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
                +G ++  EL++   L  +              +    +++ +G   G +   +F++
Sbjct: 623  ALNNQGLKKQFELITDC-LTKKYINGPITFKEDFASLNRTDILVGSGTLKGLLIDKYFYS 681

Query: 163  SSQVA--EKRLLTFKKLFGDRLYVNLQRHRGYD----RYRESQVVQLAYTHELPLVATNN 216
            S      E +L  F ++   + + +  R+        +   S+++  A  H    +AT +
Sbjct: 682  SHDDFINELKLYDFIEIPAPQCFEHWIRYGFITTKQLQKGLSEIIYEAKKHSKIFIATAD 741

Query: 217  SLFLSEEDYEAHDVLMAVAHSTVVSQ--------KDRPRVTPDHYLKNRSEMVSIFSDLP 268
              +L   D E    L+                  ++   V P+       EM+  F+ L 
Sbjct: 742  VKYLDPWDQEIFKSLVYAKGIKNARHYLFDYKKAEEGRLVIPNQRFLTTEEMLKQFAFLQ 801

Query: 269  E-------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
            +        ++NT  IA     + +    I       E DD +K+  + +   A A    
Sbjct: 802  DNQLIEELVIDNTQLIAN----MAENIEVIKSGLFTPEFDDSKKKLYDLVYKNAYAKYGE 857

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
            +L           +  ++R+D ELN I +  F   + I    ++ +      VG  RGS 
Sbjct: 858  KL----------PEIIQKRIDSELNPIIKYGFDVIYWISYKLVKLSIDQGFIVG-SRGSI 906

Query: 382  AGSVTAYALTITDIDPL---------RF-------------------------------- 400
              S  A  + I++++PL         ++                                
Sbjct: 907  GSSFVASLIGISEVNPLIPHYCCPNCKYFEVANAPGVTSGYDLPDKPCPECNTLIKGDGQ 966

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            S+ FE FL  +   +PD D++F  + +  V   ++  +G     +  T   +  K A   
Sbjct: 967  SIPFETFLGFNADKVPDIDLNFTGEFQGVVHEEIRRLFGKSHTFRAGTISKVAEKTAFGY 1026

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V       Y++  R  + IP                 F E             ++ +++ 
Sbjct: 1027 VK-----SYAEQTR--QTIPQI---------------FVEF------------LANRIKD 1052

Query: 521  LYRHASTHAAGIVIGDR--PLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + R    H  GI+I  +   +    P+     D  S    T F+ K I    ++KFD LG
Sbjct: 1053 VKRTTGQHPGGIIIIPKQFDIFDFTPINYPANDQSSSWLTTHFDYKAIHD-NVLKFDILG 1111

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
                T ++     L ++   +++  +P +D     L ++   +GI   + S  +    G+
Sbjct: 1112 HDNPTSIK-----LLEQYTGINIYDVPKNDQNVIKLFSSTEPMGISPEQISNEKTGAIGL 1166

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE-KIVSIHPLIDPMLKETQGVIIYQEQ 694
                   +  +++  +P  + +++  +   +G    I +   L+    ++   V+  ++ 
Sbjct: 1167 PEFGTSFVRQMLNDIKPKTVADLISISGLSHGTNVWINNADELVLEKGRKLNEVVCCRDD 1226

Query: 695  VMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            +M +     +    S +  + +R+  G    E    +K               +   + +
Sbjct: 1227 IMPMLIAKGIEPLMSFTLMEKVRKGKGLSNDEVELLEKH-------------NVPNWLIK 1273

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE------MDNVEKIKKF 805
             + K  +Y F K+HA AY  ++   AW K + P+ F A+  T         + ++K    
Sbjct: 1274 SMQKI-EYLFPKAHATAYVTMALWIAWFKLYEPLAFYASYFTAHSKADDIKNMIDKPNGI 1332

Query: 806  ----------------------------CQDARQFNIQIMPPSVNTPCVDFKV---GDNR 834
                                         ++       I    ++    +  +       
Sbjct: 1333 KVSKRLYELKKTEDRSNKENDLIGVFEVAEELYARGFYISNVDIDKSQAEKWLIDKEKGC 1392

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +    + I+ +GT  A  I+ A  +KPF S EDF +R     +++ V +++     LD  
Sbjct: 1393 LIPPFSTIESLGTVKANDIVNAREEKPFLSKEDFKTRT---GVSKTVFDTMNQMKILDSL 1449

Query: 895  GYS 897
              S
Sbjct: 1450 NDS 1452



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   + +  + ++G  + ++ +++    + PAI I DT+      +   KA  +GI+ I 
Sbjct: 337 VEFHISTKMNTMDGLFNADDFVERAKRWKMPAIGIMDTDGAQGYPKLFNKAKKSGIKAIY 396


>gi|291320001|ref|YP_003515259.1| DNA polymerase III subunit alpha [Mycoplasma agalactiae]
 gi|290752330|emb|CBH40301.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae]
          Length = 1459

 Score =  310 bits (794), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 147/926 (15%), Positives = 312/926 (33%), Gaps = 174/926 (18%)

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             +     +D    T+           +  +    +G ++  EL++   L  +        
Sbjct: 594  SKNIFTFEDLGNFTSNDLYAKMHGYEVSTIALNNKGLKKQFELITDC-LTKKFINGPITF 652

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFGDRL-YV 184
                  +    +++ +G   G +   +F++S     K L  +        + F   + Y 
Sbjct: 653  KEDFVNLDRSDILVGSGTLKGLLIDKYFYSSHDDFIKELKHYDFIEIPAPQCFEHWIKYG 712

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-- 242
             +   + YD    S+++  A  H    +AT +  +L   D E    L+            
Sbjct: 713  FITTKQLYDG--LSEIISEAKKHSKICIATADVKYLDPWDKEIFMSLVYAKGIKNARHYL 770

Query: 243  ------KDRPRVTPDHYLKNRSEMVSIFSDLPE---ALENTVEIARRCSFILQVHAPILP 293
                  ++   V P+       EM+  F+ L +   A E  ++  ++ + + +    I  
Sbjct: 771  FDYKKAEEGKLVIPNQRFLTTDEMLEQFAFLNDKKLAEEIVIDNTQKIANMAENIEVIKN 830

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
                 E DD +K    +L +        +  +         +  ++R+D ELN I +  F
Sbjct: 831  GLFTPEFDDSKK----KLHDLVYKNAHAKYGENL------PELIQKRIDSELNPIIKYGF 880

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL--------------- 398
               + I    ++ +      VG  RGS   S  A  + I++++PL               
Sbjct: 881  DVIYWISYKLVKLSIDQGFIVG-SRGSIGSSFVASLIGISEVNPLVPHYCCPKCKHFEIA 939

Query: 399  --------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                                        S+ FE FL  +   +PD D++F  + +  V  
Sbjct: 940  NVPGITSGYDLPDKICPQCNTKIKGDGQSIPFETFLGFNADKVPDIDLNFTGEFQGVVHE 999

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
             ++  +G     +  T   +  K A   V       Y++  R  + IP            
Sbjct: 1000 EIRKLFGESHTFRAGTISKVAEKTAFGYVK-----SYAEQTR--QNIPQI---------- 1042

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPM---YR 547
                 F E             ++ +++ + R    H  GI+I  +   +    P+     
Sbjct: 1043 -----FVEF------------LANRIKDVKRTTGQHPGGIIIIPKQFDIFDFTPINYPAN 1085

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D  S    T F+ K I    ++KFD LG    T ++     L ++   +++  +P +D  
Sbjct: 1086 DQSSSWLTTHFDYKAIHD-NVLKFDILGHDNPTSIK-----LLEQYTGINIYDVPKNDES 1139

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
               L ++   +GI   + S  +    G+       +  +++  +P  + +++  +   +G
Sbjct: 1140 VIKLFSSTEPMGIKPDQISNEKTGAIGLPEFGTSFVRQMLNDIKPKTVADLISISGLSHG 1199

Query: 668  KE-KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKE 723
                I +   L+    ++   V+  ++ +M +     +    S +  + +R+  G   +E
Sbjct: 1200 TNVWINNADELVLEKCRKLNEVVCCRDDIMPMLIAKGIEPLLSFTLMEKVRKGKGLSNEE 1259

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
                +K               +   + + + K  +Y F K+HA AY  ++   AW K + 
Sbjct: 1260 VGLLEKH-------------NVPNWLIKSMQKI-EYLFPKAHATAYVTMALWIAWFKLYE 1305

Query: 784  PVEFLAASMTLE------MDNVEKIKKF----------------------------CQDA 809
            P+ F A+  T         + ++K                                 ++ 
Sbjct: 1306 PLAFYASYFTAHSKADDIENMIDKPNGIKVSKRLYELKKTEDRSNKENDLIGVFEVAEEL 1365

Query: 810  RQFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
                  I    ++    +  +       +    + I+ +G+  A  I+ A A+K F S E
Sbjct: 1366 YARGFYISNVDIDKSQAEKWLIDKERGCLIPPFSTIESLGSVKANDIVNARAEKAFLSKE 1425

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALD 892
            DF  R    K     +  +    +L+
Sbjct: 1426 DFKIRTGVSKTVFDTMNRMKILDSLN 1451



 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   + +  + ++G  + ++ +++    + PA+ I DT+      +   KA  AGI+ I 
Sbjct: 338 VEFHISTKMNTMDGLFNADDFVERAKRWKMPAVGIMDTDGAQGYPKLFNKAKKAGIKAIY 397


>gi|112959018|gb|ABI26998.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959045|gb|ABI27016.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959108|gb|ABI27058.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
          Length = 441

 Score =  310 bits (794), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 106/332 (31%), Positives = 182/332 (54%), Gaps = 7/332 (2%)

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S   A  +++++ +FA+YGFN+
Sbjct: 1    GFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNR 60

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +A+ + I ++ PS+N 
Sbjct: 61   SHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINH 120

Query: 824  PCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                F+V +     YS   I+ V T     I+      PF    DFC R+  K L+  VL
Sbjct: 121  SNYYFQVENESSIRYSFRVIRKVPTKFILEIINERKKAPFQDFFDFCERMPHKMLSETVL 180

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLE 941
            E+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+FA +       K    
Sbjct: 181  EALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYR 238

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            K +  +   + E E+   G Y S HP+  Y+  L+ + I       +   G N ++AA V
Sbjct: 239  KTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYV 295

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 296  HEVKSIRTKKGETMCFLTISDDSKELSAVMFP 327


>gi|157273447|gb|ABV27346.1| DNA polymerase III alpha subunit [Candidatus Chloracidobacterium
            thermophilum]
          Length = 445

 Score =  309 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 89/276 (32%), Positives = 133/276 (48%), Gaps = 4/276 (1%)

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
              SH+  Y +++Y+TA++K HYP  F AA +T E+ + +K+ ++ + AR   ++I+PP V
Sbjct: 45   ANSHSVCYGILAYRTAYLKAHYPSHFWAAVLTSELSDSDKVARYIECARAQGVEILPPDV 104

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRR 880
            N     F     RI + L AIKG+G  T   I+EA     PF SL D   R+D K LNRR
Sbjct: 105  NVSHHGFTATGGRIRFGLMAIKGIGEATVDAILEARQKGGPFRSLFDLTKRLDPKALNRR 164

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKIT 939
            VLESLV +GALD    SR Q   +++   +Y     ++      ++F     T  + +  
Sbjct: 165  VLESLVKSGALDSLPGSRAQKFAAIEAALEYGLQAHRDAATGQASLFDTTSSTDPAPESQ 224

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIRL 997
            L +            E+  LGFY SGHPL  ++  L       Y E        G  +R+
Sbjct: 225  LPQVPEWTEQESLAGEKASLGFYLSGHPLATFRETLAAFKSLSYAELAEQAPGPGQVVRM 284

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +V +   K T+KG R    T  +     E   +P
Sbjct: 285  GGIVSNFVVKNTKKGDRFAVFTLEDETGSIEVIAWP 320


>gi|223036034|gb|ACM78670.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. PS0705-5A3]
 gi|223036090|gb|ACM78698.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. SA0506-45]
          Length = 336

 Score =  309 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 127/352 (36%), Positives = 189/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
               PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   EMGMPAMALTDFTNLCGLVKFYGTAHNCGVKPIIGADFIM----------QSEEFADELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + +L +   GY+ L  L+S  YL    +    I  SWL +   EGLI+L+G  +G I +
Sbjct: 51  KLTVLATNNVGYKNLTLLISEAYLRGHVQHQPVIDKSWLIKYA-EGLIVLSGAKNGEIGK 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNN 216
           A    +  + +K +  ++  F DR Y+ L R +R  +       ++LA   +LP+VATN 
Sbjct: 110 ALLKGNHALVDKCVEFYQTHFADRFYLELIRTNRADEETYLHFALELAENKQLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +FL+EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEALEN+V
Sbjct: 170 VVFLTEEFFEAHEIRVAIHDGYTMVDPRRPKNYSPQQYLRSEAEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F  +       EE   L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGEYFLPAFPTE-----GMEETEYLVMKSKQGLEERLEFLFPDPEIRAQ 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL VI  M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLLIELEVINNMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|254247147|ref|ZP_04940468.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
 gi|124871923|gb|EAY63639.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
          Length = 428

 Score =  309 bits (792), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 99/414 (23%), Positives = 174/414 (42%), Gaps = 20/414 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA     ++++        IAITD  +L  A      A   G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASHAEELVERADELGYRGIAITDECSLAGAPRMHVAAKEKGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            +IG   D+   +       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVIGSYFDVTPDE----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMEAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            ++    L     +   +        I    +   + V + ++  F+  FG+R  + L Q
Sbjct: 124 YKLTSRILSAPPAKFAHLRGMPDCFAILVPTYPVRADVLDAQVAWFRATFGERARLGLVQ 183

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D  +  ++        + LVA  +            DV+ A+     V++     
Sbjct: 184 LQRALDGVQRDEIRAAGKRRGVRLVALGDVTMHVRSCKALQDVMTAIRVGMPVAECGYAL 243

Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + +L++R  +  +FS   E +  T  +   C F L       P  +          
Sbjct: 244 APNAEQHLRSRGRIAKLFS--AEEIGETCAMLDACDFDLDDLKYEYPLELVPRG----HT 297

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + L+ +  AG+  R   G   K        +++ +EL +IA++++  +FL V D +++
Sbjct: 298 PTSYLKQETWAGVARRYWNGVPEK------VAKQIRYELALIAKLEYEPFFLTVYDIVKY 351

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
           A+  NI +  GRGS A SV  Y L IT+++P + ++LFERF++  R   PD D+
Sbjct: 352 ARSQNI-LCQGRGSAANSVVCYCLGITEVNPDQSTMLFERFISEKRGEPPDIDV 404


>gi|148377333|ref|YP_001256209.1| DNA polymerase III PolC [Mycoplasma agalactiae PG2]
 gi|148291379|emb|CAL58763.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae PG2]
          Length = 1459

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 147/929 (15%), Positives = 308/929 (33%), Gaps = 180/929 (19%)

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             +     +D    T+           +  +    +G ++  EL++   L  +        
Sbjct: 594  SKNIFTFEDLGNFTSNDLYAKMHGYEVSTIALNNKGLKKQFELITDC-LTKKFINGPITF 652

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFGDR---- 181
                  +    +++ +G   G +   +F++S     K L  +        + F       
Sbjct: 653  KEDFVNLDRSDVLVGSGTLKGLLIDKYFYSSHDDFIKELKHYDFIEIPAPQCFEHWIKYG 712

Query: 182  LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
                 Q H G      S+++  A  H    +AT +  +L   D E    L+         
Sbjct: 713  FITTKQLHDGL-----SEIISEAKKHSKICIATADVKYLDPWDKEIFMSLVYAKGIKNAR 767

Query: 242  Q--------KDRPRVTPDHYLKNRSEMVSIFSDLPE---ALENTVEIARRCSFILQVHAP 290
                     ++   V P+       EM+  F+ L +   A E  ++  ++ + + +    
Sbjct: 768  HYLFDYKKAEEGKLVIPNQRFLTTDEMLEQFAFLNDKKLAEEIVIDNTQKIANMAENIEV 827

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            I       E DD +K    +L +        +  +         +  ++R+D ELN I +
Sbjct: 828  IKTGLFTPEFDDSKK----KLHDLVYKNAHAKYGENL------PELIQKRIDSELNPIIK 877

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------ 398
              F   + I    ++ +      VG  RGS   S  A  + I++++PL            
Sbjct: 878  YGFDVIYWISYKLVKLSIDQGFIVG-SRGSIGSSFVASLIGISEVNPLVPHYCCPKCKHF 936

Query: 399  -----------------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                           S+ FE FL  +   +PD D++F  + +  
Sbjct: 937  EIANVSGITSGYDLPDKTCPQCHTKIKGDGQSIPFETFLGFNADKVPDIDLNFTGEFQGV 996

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V   +   +G     +  T   +  K A   V       Y++  R  + IP         
Sbjct: 997  VHEEILKLFGESHTFRAGTISKVAEKTAFGYVK-----SYAEQTR--QNIPQI------- 1042

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPM-- 545
                    F E             ++ +++ + R    H  GI+I  +   +    P+  
Sbjct: 1043 --------FVEF------------LANRIKDVKRTTGQHPGGIIIIPKQFDIFDFTPINY 1082

Query: 546  -YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
               D  S    T F+ K I    ++KFD LG    T ++     L ++   +++  +P +
Sbjct: 1083 PANDQSSSWLTTHFDYKAIHD-NVLKFDILGHDNPTSIK-----LLEQYTGINIYDVPKN 1136

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D     L ++   +GI   + S  +    G+       +  +++  +P  + +++  +  
Sbjct: 1137 DESVIKLFSSTEPMGIKPDQISNEKTGAIGLPEFGTSFVRQMLNDIKPKTVADLISISGL 1196

Query: 665  KNGKE-KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKK 720
             +G    I +   L+    ++   V+  ++ +M +     +    S +  + +R+  G  
Sbjct: 1197 SHGTNVWINNADELVLEKGRKLNEVVCCRDDIMPMLIAKGIEPLMSFTLMEKVRKGKGLS 1256

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             +E    +K               +   + + + K  +Y F K+HA AY  ++   AW K
Sbjct: 1257 NEEVGLLEKH-------------NVPDWLIKSMQKI-EYLFPKAHATAYVTMALWIAWFK 1302

Query: 781  THYPVEFLAASMTLE------MDNVEKIKKF----------------------------C 806
             + P+ F A+  T         + ++K                                 
Sbjct: 1303 LYEPLAFYASYFTAHSKADDIENMIDKPNGIKVSKRLYELKKTEDRSNKENDLIGVFEVA 1362

Query: 807  QDARQFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
            ++       I    ++    +  +       +    + I+ +G+  A  I+ A A+K F 
Sbjct: 1363 EELYARGFYISNVDIDKSQAEKWLIDKERGCLIPPFSTIESLGSVKANDIVNARAEKAFL 1422

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            S EDF  R    K     +  +    +L+
Sbjct: 1423 SKEDFKIRTGVSKTVFDTMNRMKILDSLN 1451



 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   + +  + ++G  + ++ +++    + PA+ I DT+      +   KA  AGI+ I 
Sbjct: 338 VEFHISTKMNTMDGLFNADDFVERAKRWKMPAVGIMDTDGAQGYPKLFNKAKKAGIKAIY 397


>gi|330882993|gb|EGH17142.1| error-prone DNA polymerase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 325

 Score =  306 bits (785), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 104/344 (30%), Positives = 166/344 (48%), Gaps = 21/344 (6%)

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                + +L+    +   + D    L  +V IARRC+F L+      P  +  +     +
Sbjct: 1   MFANGERHLRPLDALAEHYPDW--LLAESVRIARRCTFDLKQLKYEYPHELVPKG----Q 54

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + LR     G   R   G           R +++ EL +I   KF  YFL V D ++
Sbjct: 55  TPTSWLRELTERGARKRWPNGLTPAT------RAQVEKELALITEKKFDSYFLTVHDIVE 108

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+  +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  D
Sbjct: 109 FARSQHI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISRERNEPPDIDVDFEHD 167

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L +        
Sbjct: 168 RREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPDQINALAEAFSRWS-- 225

Query: 486 PVSLQAIADDSRFREARLAD--PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                ++    R RE       P + R+L ++ +L G  RH S H  G VI + PL  LV
Sbjct: 226 ----DSLPSPERLREYGFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLV 281

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           P+     +D  + Q++   ++  GL+K D L L  L+ L+++ D
Sbjct: 282 PVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFD 325


>gi|148530008|gb|ABQ82210.1| DNA polymerase III alpha chain [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 353

 Score =  304 bits (780), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 146/363 (40%), Positives = 197/363 (54%), Gaps = 15/363 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FVHL+VHS+YSL +GA+ +  I       + PA+AITDT NLF ALEFSQ     G+QP
Sbjct: 5   DFVHLRVHSAYSLSQGAIRIPEIASLAQDMRMPAVAITDTGNLFGALEFSQYCSGKGVQP 64

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIGCQ        + +  +   P      +VLL     G   L  L S+ +L        
Sbjct: 65  IIGCQ--------VGLPPRNDKPGAPAEPVVLLAQDETGLMNLQYLSSQGFLTGDT-AEP 115

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            + L  L E   EGLI+LTGG+ GP+ R           + L      FG+RL V L RH
Sbjct: 116 TVTLDVLCERA-EGLILLTGGTRGPLFRMLADGQQDEVAQWLERLHAAFGERLAVELHRH 174

Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +   +  ++ LA    LPLVATN   F   E YEAHD L+ +A    ++++DR RV
Sbjct: 175 GLPVQKAVKPGMIALADRMGLPLVATNECFFPRPEMYEAHDALLCIAQGRTMAERDRWRV 234

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
           TP+H+ K  + M  +F+DLPEA + T+ IARRC+  ++   P+LP   + +       EE
Sbjct: 235 TPEHWFKPPAMMRDLFADLPEACDYTLAIARRCAVRVETRKPLLPVCPKVQ---PGATEE 291

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             LR  A  GL  RLA+  +      Q YR RL FEL++IA+M F GYF+IVADFIQWAK
Sbjct: 292 QTLRAMAEDGLARRLARMDMDDA-TRQVYRDRLTFELDIIAKMGFPGYFMIVADFIQWAK 350

Query: 369 KNN 371
            ++
Sbjct: 351 AHD 353


>gi|321309654|ref|YP_004191983.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str. Langford
            1]
 gi|319801498|emb|CBY92144.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            haemofelis str. Langford 1]
          Length = 1393

 Score =  304 bits (778), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 148/915 (16%), Positives = 297/915 (32%), Gaps = 194/915 (21%)

Query: 87   NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146
            N+G   +      ++ V    G + L E++S     +Q     +I  + +       LI+
Sbjct: 541  NKGVFNYIHGHKALVYVKNQAGVKDLYEILSIAQT-EQYLGKPQISRNSISSYRENLLIV 599

Query: 147  LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD---RLYVNLQRHRGYDRYRES---QV 200
             +   +         +      K    +  L           + R+        +   ++
Sbjct: 600  -SPPLNSEPIALLLRDDISTFLKASEFYDYLIIPPPSHFVHEVSRNNLDTEEVNALLAKL 658

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV------AHSTVVSQKDRPRVTPDHYL 254
             +L+  H + L+    + ++  ++Y+ +  L+         H    S  +     P  + 
Sbjct: 659  YELSKEHSIKLLFNYAARYIHPQEYQQYLTLIHTKGLSGKRHPLYKSGANNMDF-PLFHY 717

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC-DDIQKEEENELRN 313
            +  SE +  +  L    E  ++IA +               I+K+    I +   + L N
Sbjct: 718  RTTSEFLEEYGFLGIPKEELLDIAFKSQQEFLDSVEGGIEVIKKKLHPPIIEGCSDNLEN 777

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
                 L+    +         +   +R  FEL+ I    +S  + +    +Q +  N   
Sbjct: 778  FCRGKLKELYGENT------HEFLEKRFSFELSSIKNNNYSVIYWVSYLLVQESINNGYL 831

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLR---------------------------------- 399
            VG  RGS   S+ A+ L I++++PL                                   
Sbjct: 832  VG-SRGSVGSSLIAFLLNISEVNPLPPHYRCAKCSVFELHEEFTESGFDLPDKECPHCGA 890

Query: 400  ------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
                    + FE F+      +PD D++F  + ++    ++++  GH+RV +  T  ++ 
Sbjct: 891  ILGKDGHHIPFETFMGYGGSKVPDIDLNFSGEYQNRAHNFLRDLLGHDRVYRAGTISTMA 950

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             K A   V                            +   ++++       +  + +L  
Sbjct: 951  EKTAFAIV----------------------------KTYEEETQ------QELGLGKLNW 976

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGL 568
            I++++  + R +  H  GI++      +    P+     D  SD   T    + +  A L
Sbjct: 977  IAKQIIDVKRTSGQHPGGILVIPNDKTIYDFSPINYPANDTSSDWLTTHLEFEDLHDA-L 1035

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT-------------- 614
            +KFD LG    T L    +   Q     D   +P DD E  +L  +              
Sbjct: 1036 LKFDILGHDDPTTLALLKEITGQ-----DPRNVPTDDREVLNLFKSRKGIGIEDSSDFVG 1090

Query: 615  ---KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                G +G+ +  +   R+ +    P+   D+I +        +                
Sbjct: 1091 EDETGAIGLPEFGTLLTRKIIRTCDPNSFADLIRISGFSHGTGVWK-------------- 1136

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
             +I  LI     +   VI  ++ +  +    +G  + EA  +  ++ K       + K  
Sbjct: 1137 QNIDKLIKSKQYKLNQVITCRDDI-TLHLCSAGIQMEEAFAISESIRKGKGVSEAQLKL- 1194

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
                     +        +   AK   Y F K+HA AY ++S++ AW K ++ + F A  
Sbjct: 1195 ---------MQDNKVPQWYIDSAKKMTYIFPKAHATAYVLMSWKIAWYKRYHTLAFFAVF 1245

Query: 792  MTLEMDNV--------------------------------------EKIKKFCQDA---- 809
             TL  D+                                       +K   +  +A    
Sbjct: 1246 FTLRRDDFDYSLLVKNDIEAVKDKYHDIFKKMKSNNFEVKSTLKTKDKSAFYVYEAALEF 1305

Query: 810  RQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLED 867
             +   +    S+N      F      +      I G+G   A+H++E    + PF SL D
Sbjct: 1306 LKCGFRFKNISINESDFSKFIPQGQELLIPFIVIDGLGAIKAKHLVEKRNEEGPFQSLND 1365

Query: 868  FCSRVDSKKLNRRVL 882
            F  R    +   + L
Sbjct: 1366 FAKRTKLNRTVIQKL 1380



 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 49/123 (39%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           ++  S V L +H+ +S  +G     + + K  A    A+ +TD  ++ S  E  + +   
Sbjct: 258 KEEKSIVPLSIHTKFSAFDGLYVFKDFVSKAKALGHKALGVTDFTSVQSFAEIERVSRKE 317

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           GI+PI G +L+I   +   + N             +      G   L + ++ + +    
Sbjct: 318 GIKPIYGAELEIVPDEYPFIINTDYQREDQYNVYCVFDIETTGLNPLFDEITEIAIYKYS 377

Query: 126 KQS 128
            + 
Sbjct: 378 NKR 380


>gi|241068645|ref|XP_002408496.1| hypothetical protein IscW_ISCW016064 [Ixodes scapularis]
 gi|215492484|gb|EEC02125.1| hypothetical protein IscW_ISCW016064 [Ixodes scapularis]
          Length = 300

 Score =  304 bits (778), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 142/300 (47%), Positives = 202/300 (67%), Gaps = 10/300 (3%)

Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLAD----- 505
           +QAKA ++DV R L +PY   D L +L+P    +PVSL QAI +      A   +     
Sbjct: 1   MQAKAVIKDVARVLSLPYKFADYLTELVPFSAVNPVSLEQAIREVPELANAAKGNGLYNL 60

Query: 506 ----PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
                 +  +L+ S  LEGL+RH+STHAAGIVI    L  +VP+Y+D  SD+ V  ++MK
Sbjct: 61  EGEAELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVPVYKDANSDMLVVGYSMK 120

Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
           + E AGLIKFDFLGL+TLT++      L ++G++VD + + FDD++TY +L     +G+F
Sbjct: 121 YSEIAGLIKFDFLGLQTLTVITDCKKLLKEQGIEVDFNNMTFDDNKTYQMLCKGKGVGVF 180

Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
           Q ES GM+ AL  ++PD I D+IAL +LYRPGP++NI  Y   K+  ++   +H L+ P+
Sbjct: 181 QFESIGMKDALRRLKPDSIHDLIALGALYRPGPMENIPTYIACKHKLQQPDYLHELLKPI 240

Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
           L+ET GV+IYQEQV +IAQ+L+GY+L  AD+LRRAMGKKIK+EM++Q+E F+ GA  N I
Sbjct: 241 LEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRAMGKKIKKEMEEQEEIFVKGAIANNI 300


>gi|254716292|ref|ZP_05178103.1| error-prone DNA polymerase [Brucella ceti M13/05/1]
          Length = 471

 Score =  303 bits (777), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 92/409 (22%), Positives = 168/409 (41%), Gaps = 32/409 (7%)

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVII 690
             D++  V++ RPGPI  D +  Y  R++G+E      P         +  +L +T+GV +
Sbjct: 1    YDLVIEVAIVRPGPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPL 60

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +QEQ M+IA   + ++  EA+ LRRAM   +    +   +++ I G    G  +T A N 
Sbjct: 61   FQEQAMRIAMEAAKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENC 120

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            F  +  F +YGF +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DA
Sbjct: 121  FNQIKGFGEYGFPESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDA 180

Query: 810  RQFNIQIMPPSVNTPCVDFKVG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            R+  + ++P  VN    D  +         +      I G        ++    + P+ +
Sbjct: 181  REHGVTVLPVDVNFSQWDNILEETPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRT 239

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            +ED   R+     +RR    L  A A       R   L ++  +            ++  
Sbjct: 240  IEDMHRRLRL---DRRAFTLLADADAFGSLDIDRRAALWAVRRLP----------NDETL 286

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
             +F     +   +    K     +S     +         GHPL   +  L   G+    
Sbjct: 287  PLFRAAAASELAQEPRTKLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCR 346

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   G  +++A +V  +Q+  + KG  + ++T  +         +P
Sbjct: 347  AVQEGADGRRMKVAGVVTVRQRPGSAKG--VVFLTIEDETGIANIVIWP 393


>gi|330992109|ref|ZP_08316058.1| Error-prone DNA polymerase 2 [Gluconacetobacter sp. SXCC-1]
 gi|329761130|gb|EGG77625.1| Error-prone DNA polymerase 2 [Gluconacetobacter sp. SXCC-1]
          Length = 374

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 109/347 (31%), Positives = 164/347 (47%), Gaps = 17/347 (4%)

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +FS  PEA+  T++I  RC F L   A   P     E     +  +  L      G 
Sbjct: 1   MARLFSRYPEAVARTMDIVGRCRFSLDDLAYRYP----DEVSVPGQTPQQALEALTWEGA 56

Query: 320 EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                 G         D  + L  EL +I RM ++ YFL V   +++A+  +I +  GRG
Sbjct: 57  RSVYPDGV------PDDVAETLRHELGLIGRMNYAPYFLTVNSIVRYARSQDI-LCQGRG 109

Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
           S A S   Y L IT IDP R SLLFERF++ +R   PD D+DF   RR++VI++V   YG
Sbjct: 110 SAANSAVCYVLGITAIDPARNSLLFERFVSEERGEPPDIDVDFEHARREQVIQWVYEHYG 169

Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
            +R A        +AK ALRDVG+ + +P   +  L   I       +  +A+ D     
Sbjct: 170 RDRAALTAVVIRYRAKGALRDVGKVMGLPEDLIRSLSGHIWGW-GRKLDDEALNDTG--- 225

Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
              L+D  +   L++++ L G+ RH S H  G V+    L +LVP+         + +++
Sbjct: 226 -IDLSDRRIRLTLDLARCLIGMPRHLSQHPGGFVLTHDRLDELVPIEPASMEQRQIIEWD 284

Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
              I+    +K D L L  LT ++K LD LA+       L  +P ++
Sbjct: 285 KDDIDVLKFMKVDILALGMLTCMKKGLDLLAEHKGQHFTLQTLPAEE 331


>gi|322648191|gb|EFY44658.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
          Length = 321

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 100/317 (31%), Positives = 159/317 (50%), Gaps = 18/317 (5%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2   SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62  IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112 AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170

Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171 IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246 P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
           P   +P  Y+++  EM  +F+D+PEALENTVEIA+RC+  +++    LP+F   +     
Sbjct: 231 PRNYSPQQYMRSIDEMCELFADIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286

Query: 305 KEEENELRNKAVAGLEV 321
              E+ L  K   G   
Sbjct: 287 -TTEDYLVKKIERGARR 302


>gi|240047815|ref|YP_002961203.1| DNA polymerase III PolC [Mycoplasma conjunctivae HRC/581]
 gi|239985387|emb|CAT05400.1| DNA polymerase III alpha subunit [Mycoplasma conjunctivae]
          Length = 1455

 Score =  301 bits (771), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 158/898 (17%), Positives = 317/898 (35%), Gaps = 168/898 (18%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
              ++     G ++L +LVS     D       +    L++   E L++ +GG    +   
Sbjct: 598  FTIIAKNQAGIKKLYQLVSLSNT-DYLISKPLLFYDLLEK--DENLLIGSGGPESILIDN 654

Query: 159  FFFNSSQVAEKRL--LTFKKLFGDRLYVNLQRHRGYDRYR----ESQVVQLAYTHELPLV 212
              F++ + AEK +    F +L     + +L     + +         ++     ++ P+V
Sbjct: 655  LLFSTKENAEKFIPIFDFIELPPPEAFRHLIERNMFKKEHIFDLLKTLIAFGKKYKKPVV 714

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAH-----STVVSQKDRPRV-----TPDHYLKNRSEMVS 262
            A  +  ++  +    H++ +           +   ++R         PD YL    E+++
Sbjct: 715  AIGDVRYVEPKQKIFHELYIYAKRVGGGSHNLFDHREREDYKKSHIFPDKYLFTTEELIN 774

Query: 263  IFSDLPE-------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
             F+ L +        ++N+  I+ +    +++   I P   + + D+ + + +  +   A
Sbjct: 775  QFAFLEDEKLIKEIVIKNSNLISDQIDNNIEI---IKPGLYKPKFDNSEYKLKEFVYENA 831

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
                               +   +R+  ELN I    F   + I    +  AK+    V 
Sbjct: 832  HKKYGK----------IIPEKIEKRIKRELNPIIEHGFHVIYWISKSLVHEAKRQGAIVD 881

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLL-------------------------------- 403
              RGS   S+ AY   ITD++PL    L                                
Sbjct: 882  -SRGSVGSSIVAYLTGITDVNPLEPHYLCLSCQNVEFSDDPDILCGYDLPEKKCSKCGHI 940

Query: 404  ---------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                     FE FL  +   +PD D++F  D + ++  YV++ +G +   +  T  +   
Sbjct: 941  LNRDGQNIPFETFLGFEADKVPDIDLNFSSDIQLKMHDYVRDLFGDKNTFRAGTILTNAE 1000

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE- 513
            K                            A  +S    + D RF+  +         ++ 
Sbjct: 1001 KTVYG-----------------------LARKLSEVKASLDKRFQSNQEISFFTTTFMDF 1037

Query: 514  ISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGL 568
            ++ K  G+ R +  HA GI++      +    P+     + +S    T F+   I    L
Sbjct: 1038 LATKANGVKRTSGKHAGGIIVIPEEYDIEDFTPINYPANNEKSGWKTTHFDYDSIHD-NL 1096

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            +K D LG     +L      L +    +    IP  D +   L  +   L I   +  G 
Sbjct: 1097 LKLDILGHDDPKIL-----LLLEEITGIKSETIPKSDPQIIELFYSTKPLKIKPEQIGGE 1151

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI-VSIHPLIDPMLKETQG 687
                 G+       +  ++   R     +IV      +GK     +  PLI     + + 
Sbjct: 1152 LTGAIGLPEFGTPFVRKMLQNARVKSFADIVAICGLSHGKNVWQDNAEPLIREQKLQIKD 1211

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            VI  ++ +M      +   L+  +++ R    K  +E             +  I+K +  
Sbjct: 1212 VISCRDDIMIYLIKQNLDPLTAFNIMERVRKGKGVDE----------EQEQLMIAKNVPN 1261

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------- 800
               + L K   Y F K+HAAAYA+ +++ A+ K +YP+ F +   T+  D  +       
Sbjct: 1262 WYIDSLKKIG-YMFPKAHAAAYAMKAWKIAFFKLYYPLAFYSVFFTIRPDVKDIDSLTLP 1320

Query: 801  ------KIKKFCQ------------------------DARQFNIQIMPPSVNTPCVDFKV 830
                  KIK+  +                        + +    +I   ++        +
Sbjct: 1321 HAEIDRKIKELRKKVNSSSTSVSAKEKDLIPFLEISLELKARGFEIEKINLEKSEAQQWI 1380

Query: 831  ---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                +N +    ++++G+G   A +I++A ++K F S+EDF  R  +     + LE +
Sbjct: 1381 INYENNSLIPPFSSLEGIGDINASNIVKARSEKAFISIEDFEQRTGTNSTAIKKLEEM 1438



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L   +S S ++G  S    ++        AI I D++++ +  +F        I+ I 
Sbjct: 314 VELTARTSKSTMDGISSPKEYVEAAEQMGFTAIGIADSDSVQAFPDFFNALKGKSIKGIY 373

Query: 72  GCQL 75
           G   
Sbjct: 374 GSTF 377


>gi|291037377|ref|ZP_06568341.1| DNA polymerase III, alpha subunit [Gluconacetobacter xylinus NBRC
            3288]
          Length = 444

 Score =  300 bits (769), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 97/385 (25%), Positives = 172/385 (44%), Gaps = 23/385 (5%)

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+ G+EK +   P ++ +L++T G+ ++QEQVMQ+A + +G+S SEAD LRRA
Sbjct: 1    MVHPYLRRRAGQEKEIYPTPELEKVLRKTLGIPLFQEQVMQVAMVCAGFSASEADQLRRA 60

Query: 717  MGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M   K    + + + R I G +  G  +T A  IF+ L  F  YGF +SHAA++A+++Y 
Sbjct: 61   MATFKNTGTVSRFRTRLIEGMTARGYPETFAKRIFQQLEGFGSYGFPESHAASFAILAYS 120

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----- 830
            ++WMK  +P  FLAA +  +        +  +DAR+  ++I P  +N    D        
Sbjct: 121  SSWMKCTHPDVFLAALLNSQPMGFYAPAQLVRDAREHGVEIRPVCINASRWDSTPEGPER 180

Query: 831  --GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              G   +   +  +KG+    A  I+ A  D+PF S++D   R   K      L  L  A
Sbjct: 181  DDGLFAVRLGMNLVKGLANEDAARIVAARGDRPFASVDDLWRRAGVKG---AALTHLAEA 237

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
             A              L   ++ A W  K   ++   +FA        +           
Sbjct: 238  DAFR----------PGLGLARREALWAIKALRDEPLPLFAAAAVVREAEEPDVLLQPMRD 287

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
                  +    G     HP+   +P L + G+    ++      +++ +A +V+ +Q+  
Sbjct: 288  GAEVARDYNRTGLTLRDHPVAFLRPDLIERGMVTCRQAFEARDRSSLSVAGLVLVRQRPG 347

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +G  + ++T  +         +P
Sbjct: 348  SAEG--VVFMTLEDETAAINVIIWP 370


>gi|34762810|ref|ZP_00143796.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
            vincentii ATCC 49256]
 gi|27887512|gb|EAA24596.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
            vincentii ATCC 49256]
          Length = 1216

 Score =  299 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 124/696 (17%), Positives = 241/696 (34%), Gaps = 144/696 (20%)

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            N+F  + F +K    G++ +       ++               ++ +I++LV T  G +
Sbjct: 576  NMF--IIFLEKYKEKGLEYMKDINTGFEVNVRK----------QSLKNIMVLVKTQAGLK 623

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----GPIDRAFFFNSSQ 165
             +  LVS  ++   G +  RI  S L E   EGLI+ +  ++     G +   +  +  +
Sbjct: 624  NMYRLVSEAHIKYFGNKKARIPKSVLVE-NREGLIIGSSLTAHFMNTGELVDLYLRHDLE 682

Query: 166  VAEKRLLTFK--KLFGDRLYVNLQRHRG--------YDRYRESQVVQLAYTHELPLVATN 215
              E+    +   +L     Y  L    G                   L     + + A++
Sbjct: 683  KLEEAAKFYDYIELLPKSTYNELIEKDGTGALGSYEEVEKMNRYFYDLGKRLGILVTASS 742

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALEN 273
            N  +L E +     +L+  +    V    +  +    Y +   EM+  FS L E  A E 
Sbjct: 743  NVHYLDENEDIIRSILLYGSG--TVYNSRQYSINNGFYFRTTDEMLKEFSYLGENEAKEV 800

Query: 274  TVEIARRCSFILQVH-APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
             V    + + +++    PI   F   + ++ ++        KA      R+    +    
Sbjct: 801  VVTNTNKIADMIESGIRPIPEGFYPPKMENAEEIVRTMTYEKAY-----RIYGDPL---- 851

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
                   RL+ ELN I    FS  +L     ++ +  N   VG  RGS   S+ A+ + I
Sbjct: 852  -PDIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGSSLVAFMMGI 909

Query: 393  TDIDPL-----------------------------------------RFSLLFERFLNPD 411
            T+++ L                                          +S+ FE F+   
Sbjct: 910  TEVNALYPHYICDNPECKYSEFIEREGVGIDLPDKICPKCNAKLRKDGYSIPFEVFMGFK 969

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
               +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V +        
Sbjct: 970  GDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVRKYF------ 1023

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                                        E    +     ++ + +  +G  +    H  G
Sbjct: 1024 ----------------------------EDNNLNAVRAEIIRLGRLCQGAKKTTGQHPGG 1055

Query: 532  IVIGD--RPLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            +VI      + +  P+ R    +      T ++   +++  L+K D LG    T ++   
Sbjct: 1056 MVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDEQ-LVKLDILGHDDPTTIK--- 1111

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLLTTK--------------GTLGIFQLESSGMRQAL 632
              L Q    +++  IP  D +T  + ++               GT GI +  +S +RQ L
Sbjct: 1112 --LLQEYTNIEIKDIPLADKDTLKIFSSTESLGVTPEQIGTEIGTYGIPEFGTSFVRQML 1169

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
               +P    +++ +  L     +         +NG+
Sbjct: 1170 IDTRPTTFAELVRISGLSHGTNVWLNNAQEFVRNGQ 1205



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L  H+  S + G   + +I+ +       AIAITD + + S     + A         
Sbjct: 331 VELHAHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYSVVHSYPAAFKTAKKLSTDEEK 390

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           ++ I GC++ +   +   +TN           +V  + T
Sbjct: 391 MKAIFGCEMYMIDDEAPMVTNPKDKKIDDEEFVVFDIET 429


>gi|284931104|gb|ADC31042.1| DNA polymerase III alpha subunit polC/Gram positive-type [Mycoplasma
            gallisepticum str. F]
          Length = 1494

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 155/935 (16%), Positives = 321/935 (34%), Gaps = 223/935 (23%)

Query: 80   QDNLKMTNQGKTPFPTVPSI---VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            +DNL    Q          +   ++    A+G + L +LVS      Q   S ++  S L
Sbjct: 623  EDNLDQITQSNENLFNRIRLRKAIVYAKNAQGLKALYKLVSLASTK-QFYGSPKLFWSDL 681

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR-------LLTFKKLFGDRLY---VNL 186
            ++     L++ +   +G I  A  +++++   K        L+    LF   LY   + L
Sbjct: 682  EKY-QNDLLISSHPINGHIVHAAKYDTNENLRKLIKKHSFVLVPLPSLFKQDLYKKNIEL 740

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA--VAHSTVVSQKD 244
                       ++++ +    ++    ++ + +L +E    +D L+   +    +    D
Sbjct: 741  THVHDL----INRIISICEQEKILYTFSSAAHYLKQEQKRFYDCLITAEITGKKLHHFYD 796

Query: 245  RPRVT----PDHYLKNRSEMVSIFSDLP--EALE-----NTVEIARRCSFILQVHAPILP 293
            R   T    PD +++  +E+   FS +   E LE     N  +IA   +    +  P   
Sbjct: 797  RDLSTNQNVPDLHIRKNNEVYHDFSFIQDQEILEKLIYRNGEKIANLFNDEGLLPFPKKL 856

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
               + E  D      ++L        +                 + R+++ELN I +  +
Sbjct: 857  HPPKIEGSD------DKLIELVWNKAKELFGDEIDP------IIKSRIEYELNAIIKNGY 904

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------- 399
               + +    ++ +  +   VG  RGS   S+ A    I++++PL+              
Sbjct: 905  GIIYWLAHLLVKKSNDDGYLVG-SRGSVGSSIVALLAGISEVNPLQPYYYCKKCKKTKFV 963

Query: 400  ---------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                                        ++ F  F+       PD D++F    + +   
Sbjct: 964  DNVDDGHDLVNKPCEFLDCDGEMRGEGHNIPFASFMGFKGEKTPDIDLNFSSFYQAKAHD 1023

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YV+  +G     +  T  ++Q K A +     L++   +                     
Sbjct: 1024 YVRELFGESHTTRCGTISTMQDKTAYKIAKDYLEITIGE--------------------- 1062

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPM---YR 547
             +  R                 + ++  + R    H  GI++   D+ +    P+     
Sbjct: 1063 EESERLAGWY------------ASEMSEIKRTTGQHPGGILVFPKDKEIEDFCPVNYPAD 1110

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D  S    + F  +++    L+K D L  +  T+L+   +    +        IP +D +
Sbjct: 1111 DKSSKWKTSHFKFEYLHDT-LLKLDILSQEDPTILKYLYEITNVK-----PEEIPNNDPK 1164

Query: 608  TYHLLT----------------TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
               L                  + G LGI +  +   R+ L+  +P  + D+I +  L  
Sbjct: 1165 VLSLFNLDHCLENVNNNPILKDSTGALGIPEFGTKITREILKIAKPASVADLIRVSGLSH 1224

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLS 708
                 ++   N      + IV  H  ++ ++         ++ +M     L      + +
Sbjct: 1225 GT---DVWTNNAA----DLIVDKHYKLNEVIA-------CRDDIMTYLSSLGIENQIAFN 1270

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
              + +R+   KK+K E +K  + F        +S+    +  ++      Y F K+HA A
Sbjct: 1271 IMEDVRKG--KKLKPEYEKIMQEF-------NVSQDYIDSCNKI-----KYMFPKAHATA 1316

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-----------------KIKKFCQ---- 807
            Y +++++ AW K HYP  F AA  + ++   +                 +IK        
Sbjct: 1317 YVLMAWKIAWFKVHYPEAFYAAIFSFKVKEHDIETCINGGIRAITKRYNEIKSLINKTKF 1376

Query: 808  ------------------------DARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAI 842
                                    +  + NI++   S+     + F V +N+IY     I
Sbjct: 1377 AKNKSELTLNKKDEDLMPTYELYLEMLERNIKLEQVSLEHSDALHFVVKNNKIYPPFNTI 1436

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
             G+G   A+ I++   ++ F S  D  ++    K 
Sbjct: 1437 NGLGDEIAKLIVKKRNEEGFKSQADLKTKCKLNKN 1471



 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 1   LTQYLEKSPS-FV---HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           L ++L+ +P  F        H+  S+ +G   ++++      ++   IAITD+  +
Sbjct: 307 LPEWLKPTPEEFTNRHEFFFHTKMSVHDGLNDVDDLKKFCEENKLKDIAITDSGVV 362


>gi|299145851|ref|ZP_07038919.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23]
 gi|298516342|gb|EFI40223.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23]
          Length = 731

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 148/522 (28%), Positives = 248/522 (47%), Gaps = 49/522 (9%)

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHE---RVAQIITFGSLQAKAALRDVGRALQMP 468
             S+PD D+DF  DRR EV  Y++ +Y H+   RV    TF +L+ KA L+DV R  ++P
Sbjct: 31  GGSLPDVDVDFQSDRRQEVKEYIERRYNHDGKQRVFSAGTFTTLKLKAVLKDVARVHRVP 90

Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
            + V+ +  +  +D      L  +A  + +     +  P V   +E  + L G  R +S 
Sbjct: 91  VNIVNYITAIFEDDNMSWTDLFTMAATNKKVHSFIMEYPQV---IEDIRTLMGQPRSSSV 147

Query: 528 HAAGIVIGDR-------PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
           HA+ +++                P+ +     + +++F+   +++ GL+K D LG+K L+
Sbjct: 148 HASALLVTPDSKDGKDLECFDFTPIKK--IDGVLISEFDGYSLDEQGLLKNDCLGIKELS 205

Query: 581 LLQKSLDFLAQRG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            LQ  ++    +        ++     DD + Y LL    T  IFQ  S GM + L  MQ
Sbjct: 206 KLQAVINICNDKYHTNITFQNIVQSGLDDPKVYQLLQKGYTQNIFQFSSKGMTKFLVSMQ 265

Query: 637 PDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
           PD IED+IA  +L+RP  +D+     Y + K G    V +       +K T GV+ YQEQ
Sbjct: 266 PDKIEDLIAANALFRPATLDSGSTDKYVDCKLGDADPVYLWGTY-NAMKNTYGVLCYQEQ 324

Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
           + QIA+ +  +SL E   L + + KK  +++   +++F++GA++NG  K  A  I+ +  
Sbjct: 325 LAQIAREVGKFSLGEGVKLVKLISKKKVDKILALRDKFMTGANENGCPKEDAEAIWHMFE 384

Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFN 813
               Y FNKSHA AYAV +Y  A++K +YP  F   ++  +    ++I     +      
Sbjct: 385 VAGGYLFNKSHATAYAVTAYAGAYLKANYPTAFYTIAL--QWAKDDEIPTLMSEMELCSE 442

Query: 814 IQIMPPSVNTPCVDFKVGD--NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCS 870
            +I+PP +N     F      N+I++SL+ IK +G      I+        F S+E+F  
Sbjct: 443 AKIVPPDINVSGGTFITDYETNKIFWSLSRIKMLGAKATEWIINERNVRGEFSSIENFIE 502

Query: 871 RVDSKK--------------------LNRRVLESLVFAGALD 892
           R+   K                    +N R +  L+ +G  D
Sbjct: 503 RIFRYKLKQYKYWDDPDNPNEVTKCPVNARHVRHLILSGCFD 544


>gi|265763453|ref|ZP_06092021.1| DNA polymerase III subunit alpha [Bacteroides sp. 2_1_16]
 gi|263256061|gb|EEZ27407.1| DNA polymerase III subunit alpha [Bacteroides sp. 2_1_16]
          Length = 731

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 148/522 (28%), Positives = 248/522 (47%), Gaps = 49/522 (9%)

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHE---RVAQIITFGSLQAKAALRDVGRALQMP 468
             S+PD D+DF  DRR EV  Y++ +Y H+   RV    TF +L+ KA L+DV R  ++P
Sbjct: 31  GGSLPDVDVDFQSDRRQEVKEYIERRYNHDGKQRVFSAGTFTTLKLKAVLKDVARVHRVP 90

Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
            + V+ +  +  +D      L  +A  + +     +  P V   +E  + L G  R +S 
Sbjct: 91  VNIVNYITAIFEDDNMSWTDLFTMAATNKKVHSFIMEYPQV---IEDIRTLMGQPRSSSV 147

Query: 528 HAAGIVIGDR-------PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
           HA+ +++                P+ +     + +++F+   +++ GL+K D LG+K L+
Sbjct: 148 HASALLVTPDSKDGKDLECFDFTPIKK--IDGVLISEFDGYSLDEQGLLKNDCLGIKELS 205

Query: 581 LLQKSLDFLAQRG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            LQ  ++    +        ++     DD + Y LL    T  IFQ  S GM + L  MQ
Sbjct: 206 KLQAVINICNDKYHTDITFQNIVQSGLDDPKVYQLLQKGYTQNIFQFSSKGMTKFLVSMQ 265

Query: 637 PDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
           PD IED+IA  +L+RP  +D+     Y + K G    V +       +K T GV+ YQEQ
Sbjct: 266 PDKIEDLIAANALFRPATLDSGSTDKYVDCKLGDADPVYLWGTY-NAMKNTYGVLCYQEQ 324

Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
           + QIA+ +  +SL E   L + + KK  +++   +++F++GA++NG  K  A  I+ +  
Sbjct: 325 LAQIAREVGKFSLGEGVKLVKLISKKKVDKILALRDKFMAGANENGCPKEDAEAIWHMFE 384

Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFN 813
               Y FNKSHA AYAV +Y  A++K +YP  F   ++  +    ++I     +      
Sbjct: 385 VAGGYLFNKSHATAYAVTAYAGAYLKANYPTAFYTIAL--QWAKDDEIPTLMSEMELCSE 442

Query: 814 IQIMPPSVNTPCVDFKVGD--NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCS 870
            +I+PP +N     F      N+I++SL+ IK +G      I+        F S+E+F  
Sbjct: 443 AKIVPPDINVSGGTFITDYETNKIFWSLSRIKMLGAKATEWIINERNVRGEFSSIENFIE 502

Query: 871 RVDSKK--------------------LNRRVLESLVFAGALD 892
           R+   K                    +N R +  L+ +G  D
Sbjct: 503 RIFRYKLKLYKYWDDPDNPNEATKCPVNARHVRHLILSGCFD 544


>gi|188024469|ref|ZP_02997117.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 7 str. ATCC 27819]
 gi|188018579|gb|EDU56619.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 7 str. ATCC 27819]
          Length = 1442

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 163/918 (17%), Positives = 310/918 (33%), Gaps = 203/918 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + L + T    + + ELVS  +  D       I  S+L     + LI+        +  
Sbjct: 604  WVNLYIKTQANVKDMYELVSISHT-DMYYTRPTITTSFLANKKDK-LIISNSVHESDLIN 661

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR--------ESQVVQLAYTHEL 209
            A +  S    +  +  +  +      +  Q+H  Y +            ++V LA     
Sbjct: 662  ALYSKSDDEIKSIMQRYDFITLPS--IGSQKHLVYAQKITLENVQKAFKKLVSLALESNK 719

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P++ +++  +  ++D + +DV +    +T   +    R   + Y+ +       + D   
Sbjct: 720  PIIYSSSPYYFLKDDKKFYDVYV----NTKGLEGKSHRFANEEYVPDLE-----YVDQKS 770

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            A++    +       L ++    P+ I    DD  +  +  L    + G++ +       
Sbjct: 771  AIDELAYLEDENLINLIINE--NPQIINSWFDDKIQPLKEGLYAPKMEGVDQKTIDYVYH 828

Query: 330  KGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                           QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   
Sbjct: 829  TAKKIYGDNLPTIVEQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGS 887

Query: 384  SVTAYALTITDIDPL---------------------------------------RFSLLF 404
            S+ A  L ITD++PL                                         ++ F
Sbjct: 888  SLVATFLNITDVNPLAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPF 947

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  D   +PD D++F    +     ++++ +G     +  T G++  K+A   V + 
Sbjct: 948  ETFLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKY 1007

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
             +  +S+       I  D    +                            QK     R 
Sbjct: 1008 FENRFSE-----NQIVRDSTVSL--------------------------YVQKCIDSKRT 1036

Query: 525  ASTHAAGIVIGDRP--LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GI+I  +   +    P      D+      T F  +++    L+KFD LG    
Sbjct: 1037 TGQHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD-SLLKFDILGHDNP 1095

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT---------------TKGTLGIFQLE 624
            T+L+   D+       +D   +P  D     L +               T G + I +  
Sbjct: 1096 TILKLLKDYTG-----IDDRDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFG 1150

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +  +R  L   +P    D+I +  L     +      +  K+GK        L+  ++  
Sbjct: 1151 TRFVRGMLVDTKPKSFADLIRISGLSHGESVWLGNAQSLIKSGK--------LLKDVIA- 1201

Query: 685  TQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
                   ++ +M       +    +    + +R+   KKIK E                +
Sbjct: 1202 ------CRDDIMTYLIRQNVEPKTAFLIMEDVRKG--KKIKPEHQSI------------L 1241

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +      +   A    Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN + 
Sbjct: 1242 KELKIPEWYIESANKIKYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDL 1301

Query: 801  ----------------------------KIK----------KFCQDARQFNIQIMPPSVN 822
                                        K+           +   +      +I   S+ 
Sbjct: 1302 FVINQGKEFIEKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIE 1361

Query: 823  TPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                   V    +N I     AI+G+G T A  I+EA   K F ++ED  +R    K++R
Sbjct: 1362 QSQATSYVIDKQNNAIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISR 1418

Query: 880  RVLESLVFAGALDCFGYS 897
              L++L   G LD    +
Sbjct: 1419 TDLKNLRELGVLDHLSET 1436



 Score = 54.6 bits (130), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            L  H+  S L+  +S   ++D    +Q   I ITD N + S  E ++ +    ++ I 
Sbjct: 324 ELNFHTKMSSLDAIISAQELIDFAVKNQLKTIGITDRNVVQSYPEIAKFSKKQDLKIIY 382


>gi|261218071|ref|ZP_05932352.1| error-prone DNA polymerase [Brucella ceti M13/05/1]
 gi|260923160|gb|EEX89728.1| error-prone DNA polymerase [Brucella ceti M13/05/1]
          Length = 468

 Score =  298 bits (764), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 91/406 (22%), Positives = 166/406 (40%), Gaps = 32/406 (7%)

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQE 693
            +  V++ RPGPI  D +  Y  R++G+E      P         +  +L +T+GV ++QE
Sbjct: 1    MIEVAIVRPGPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQE 60

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            Q M+IA   + ++  EA+ LRRAM   +    +   +++ I G    G  +T A N F  
Sbjct: 61   QAMRIAMEAAKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQ 120

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  F +YGF +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+ 
Sbjct: 121  IKGFGEYGFPESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREH 180

Query: 813  NIQIMPPSVNTPCVDFKVG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
             + ++P  VN    D  +         +      I G        ++    + P+ ++ED
Sbjct: 181  GVTVLPVDVNFSQWDNILEETPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIED 239

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
               R+     +RR    L  A A       R   L ++  +            ++   +F
Sbjct: 240  MHRRLRL---DRRAFTLLADADAFGSLDIDRRAALWAVRRLP----------NDETLPLF 286

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                 +   +    K     +S     +         GHPL   +  L   G+       
Sbjct: 287  RAAAASELAQEPRTKLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQ 346

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                G  +++A +V  +Q+  + KG  + ++T  +         +P
Sbjct: 347  EGADGRRMKVAGVVTVRQRPGSAKG--VVFLTIEDETGIANIVIWP 390


>gi|188524415|ref|ZP_03004436.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 12 str. ATCC 33696]
 gi|198273773|ref|ZP_03206307.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 4 str. ATCC 27816]
 gi|195659873|gb|EDX53253.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 12 str. ATCC 33696]
 gi|198249528|gb|EDY74310.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 4 str. ATCC 27816]
          Length = 1442

 Score =  298 bits (764), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 163/918 (17%), Positives = 310/918 (33%), Gaps = 203/918 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + L + T    + + ELVS  +  D       I  S+L     + LI+        +  
Sbjct: 604  WVNLYIKTQANVKDMYELVSISHT-DMYYTRPTITTSFLANKKDK-LIISNSVHESDLIN 661

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR--------ESQVVQLAYTHEL 209
            A +  S    +  +  +  +      +  Q+H  Y +            ++V LA     
Sbjct: 662  ALYSKSDDEIKSIMQRYDFITLPS--IGSQKHLVYAQKITLENVQKAFKKLVSLALESNK 719

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P++ +++  +  ++D + +DV +    +T   +    R   + Y+ +       + D   
Sbjct: 720  PIIYSSSPYYFLKDDKKFYDVYV----NTKGLEGKSHRFANEEYVPDLE-----YVDQKS 770

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            A++    +       L ++    P+ I    DD  +  +  L    + G++ +       
Sbjct: 771  AIDELAYLEDENLINLIINE--NPQIINSWFDDKIQPLKEGLYAPKMEGVDQKTIDYVYH 828

Query: 330  KGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                           QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   
Sbjct: 829  TAKKIYGDNLPTIVEQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGS 887

Query: 384  SVTAYALTITDIDPL---------------------------------------RFSLLF 404
            S+ A  L ITD++PL                                         ++ F
Sbjct: 888  SLVATFLNITDVNPLAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPF 947

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  D   +PD D++F    +     ++++ +G     +  T G++  K+A   V + 
Sbjct: 948  ETFLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKY 1007

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
             +  +S+       I  D    +                            QK     R 
Sbjct: 1008 FENRFSE-----NQIVRDSTVSL--------------------------YVQKCIDSKRT 1036

Query: 525  ASTHAAGIVIGDRP--LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GI+I  +   +    P      D+      T F  +++    L+KFD LG    
Sbjct: 1037 TGQHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD-SLLKFDILGHDNP 1095

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT---------------TKGTLGIFQLE 624
            T+L+   D+       +D   +P  D     L +               T G + I +  
Sbjct: 1096 TILKLLKDYTG-----IDDRDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFG 1150

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +  +R  L   +P    D+I +  L     +      +  K+GK        L+  ++  
Sbjct: 1151 TRFVRGMLVDTKPKSFADLIRISGLSHGESVWLGNAQSLIKSGK--------LLKDVIA- 1201

Query: 685  TQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
                   ++ +M       +    +    + +R+   KKIK E                +
Sbjct: 1202 ------CRDDIMTYLIRQNVEPKTAFLIMEDVRKG--KKIKPEHQSI------------L 1241

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +      +   A    Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN + 
Sbjct: 1242 KELKIPEWYIESANKIKYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDL 1301

Query: 801  ----------------------------KIK----------KFCQDARQFNIQIMPPSVN 822
                                        K+           +   +      +I   S+ 
Sbjct: 1302 FVINQGKEFIEKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIE 1361

Query: 823  TPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                   V    +N I     AI+G+G T A  I+EA   K F ++ED  +R    K++R
Sbjct: 1362 QSQATSYVIDKQNNAIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISR 1418

Query: 880  RVLESLVFAGALDCFGYS 897
              L++L   G LD    +
Sbjct: 1419 TDLKNLRELGVLDHLSET 1436



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            L  H+  S L+  +S   ++D    +Q   I ITD N + S  E ++ +    ++ I 
Sbjct: 324 ELNFHTKMSSLDAIISAQELIDFAVKNQLKTIGITDRNVVQSYPEIAKFSKKQDLKIIY 382


>gi|188518224|ref|ZP_03003759.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 11 str. ATCC 33695]
 gi|188998138|gb|EDU67235.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 11 str. ATCC 33695]
          Length = 1442

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 163/918 (17%), Positives = 310/918 (33%), Gaps = 203/918 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + L + T    + + ELVS  +  D       I  S+L     + LI+        +  
Sbjct: 604  WVNLYIKTQANVKDMYELVSISHT-DMYYTRPTITTSFLANKKDK-LIISNSVHESDLIN 661

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR--------ESQVVQLAYTHEL 209
            A +  S    +  +  +  +      +  Q+H  Y +            ++V LA     
Sbjct: 662  ALYSKSDDEIKSIMQRYDFITLPS--IGSQKHLVYAQKMTLENVQKAFKKLVSLALESNK 719

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P++ +++  +  ++D + +DV +    +T   +    R   + Y+ +       + D   
Sbjct: 720  PIIYSSSPYYFLKDDKKFYDVYV----NTKGLEGKSHRFANEEYVPDLE-----YVDQKS 770

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            A++    +       L ++    P+ I    DD  +  +  L    + G++ +       
Sbjct: 771  AIDELAYLEDENLINLIINE--NPQIINSWFDDKIQPLKEGLYAPKMEGVDQKTIDYVYH 828

Query: 330  KGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                           QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   
Sbjct: 829  TAKKIYGDNLPTIVEQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGS 887

Query: 384  SVTAYALTITDIDPL---------------------------------------RFSLLF 404
            S+ A  L ITD++PL                                         ++ F
Sbjct: 888  SLVATFLNITDVNPLAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPF 947

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  D   +PD D++F    +     ++++ +G     +  T G++  K+A   V + 
Sbjct: 948  ETFLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKY 1007

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
             +  +S+       I  D    +                            QK     R 
Sbjct: 1008 FENRFSE-----NQIVRDSTVSL--------------------------YVQKCIDSKRT 1036

Query: 525  ASTHAAGIVIGDRP--LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GI+I  +   +    P      D+      T F  +++    L+KFD LG    
Sbjct: 1037 TGQHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD-SLLKFDILGHDNP 1095

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT---------------TKGTLGIFQLE 624
            T+L+   D+       +D   +P  D     L +               T G + I +  
Sbjct: 1096 TILKLLKDYTG-----IDDRDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFG 1150

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +  +R  L   +P    D+I +  L     +      +  K+GK        L+  ++  
Sbjct: 1151 TRFVRGMLVDTKPKSFADLIRISGLSHGESVWLGNAQSLIKSGK--------LLKDVIA- 1201

Query: 685  TQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
                   ++ +M       +    +    + +R+   KKIK E                +
Sbjct: 1202 ------CRDDIMTYLIRQNVEPKTAFLIMEDVRKG--KKIKPEHQSI------------L 1241

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +      +   A    Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN + 
Sbjct: 1242 KELKIPEWYIESANKIKYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDL 1301

Query: 801  ----------------------------KIK----------KFCQDARQFNIQIMPPSVN 822
                                        K+           +   +      +I   S+ 
Sbjct: 1302 FVINQGKEFIEKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIE 1361

Query: 823  TPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                   V    +N I     AI+G+G T A  I+EA   K F ++ED  +R    K++R
Sbjct: 1362 QSQATSYVIDKQNNAIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISR 1418

Query: 880  RVLESLVFAGALDCFGYS 897
              L++L   G LD    +
Sbjct: 1419 TDLKNLRELGVLDHLSET 1436



 Score = 54.6 bits (130), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            L  H+  S L+  +S   ++D    +Q   I ITD N + S  E ++ +    ++ I 
Sbjct: 324 ELNFHTKMSSLDAIISAQELIDFAVKNQLKTIGITDRNVVQSYPEIAKFSKKQDLKIIY 382


>gi|156339567|ref|XP_001620200.1| hypothetical protein NEMVEDRAFT_v1g223345 [Nematostella vectensis]
 gi|156204776|gb|EDO28100.1| predicted protein [Nematostella vectensis]
          Length = 308

 Score =  298 bits (762), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 115/307 (37%), Positives = 175/307 (57%), Gaps = 19/307 (6%)

Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR--FREARLADP--S 507
           +  K+A+RD  R L +P  + DR+ KLIP       +L     +     ++A  +D    
Sbjct: 1   MATKSAIRDTARVLDLPLFEADRIAKLIPGMMPSKWNLARFISEKEDDVKKALRSDEFDK 60

Query: 508 VDRLLEIS-------------QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
           V  L+ I+             + LEG  R+   HA G++I    ++  VP+     SDL 
Sbjct: 61  VKELIAIANEGDLAGETIQQAKILEGSMRNTGIHACGVIITPSDITNFVPVTTAKDSDLY 120

Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLT 613
           VTQF+    E AGL+K DFLGLKTLTL++ ++  +  R G+++D    P DD +TY L  
Sbjct: 121 VTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRLGIELDPDTFPIDDVKTYELFQ 180

Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              T+GIFQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RKNG+E+I  
Sbjct: 181 RGETVGIFQYESPGMQKYMKDLKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEEIKY 240

Query: 674 IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  L ET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK K+ +DK K +F+
Sbjct: 241 DLEACEEYLGETYGITVYQEQVMLLSQSLADFTKGEADVLRKAMGKKQKDVLDKMKPKFV 300

Query: 734 -SGASKN 739
             G  + 
Sbjct: 301 EQGCCQR 307


>gi|183508608|ref|ZP_02958116.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 14 str. ATCC 33697]
 gi|182676065|gb|EDT87970.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 14 str. ATCC 33697]
          Length = 1442

 Score =  297 bits (761), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 169/991 (17%), Positives = 322/991 (32%), Gaps = 228/991 (23%)

Query: 30   NNILDKIAADQQPAIAITDT-----NNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLK 84
            + I  +       AI +TD      NNLF                     +    + N K
Sbjct: 551  DEIAHRA---DYDAIVLTDVFKVMKNNLF-----------------NDFGITNLNEINTK 590

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            +             I L +      + + ELVS  +  D       I   +L     + L
Sbjct: 591  LQTTMLRNRSFGNWINLYIKNQANVKDMYELVSISHT-DMYYTRPTITTGFLANKKDK-L 648

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY--------DRYR 196
            I+        +  A +  + +  ++ +  +  +      +  Q+H  Y         +  
Sbjct: 649  IISNSIHESDLINALYSKNDEEIKRLIQRYDFITLPS--LGSQKHLVYAKKITIENVQKA 706

Query: 197  ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKN 256
              +++ LA      ++ +++  +  ++D + +DV +    +T   +    R   + Y+ +
Sbjct: 707  FKKLIYLALELNKIIIYSSSPYYFFKDDKKFYDVYV----NTKGLEGKAHRFANEVYVPD 762

Query: 257  RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
                   + D   A++    +       L ++    P  I    DD  +  +  L    +
Sbjct: 763  LE-----YIDQKNAIDELAYLEDEKLINLIINE--NPVHINSWFDDSIQPLKKGLYAPKM 815

Query: 317  AGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
             G++ +                      QR+  ELN I +  FS  + I    ++ + ++
Sbjct: 816  EGVDQKTIDYVYHTAKKIYGENLPTIVEQRIKKELNSIIKHGFSVVYWISHLLVEKSMQD 875

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPL-------------------------------- 398
               VG  RGS   S+ A  L ITD++PL                                
Sbjct: 876  GYGVG-SRGSVGSSLVATFLNITDVNPLTPHYLCPNCKKCEFITNADDGFDLAPKSCEQC 934

Query: 399  -------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                     ++ FE FL  D   +PD D++F    +     ++++ +G     +  T G+
Sbjct: 935  QTPMLTDGHNIPFETFLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGT 994

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            +   +A   V +  +  +S+   +           VSL                      
Sbjct: 995  MAQTSAENTVKKYFENRFSENKII-------RDSTVSL---------------------- 1025

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPM---YRDVRSDLPVTQFNMKWIEKA 566
                QK     R    H  GI+I  +   +    P      D+      T F  +++   
Sbjct: 1026 --YVQKCIDSKRTTGQHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD- 1082

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT------------- 613
             L+KFD LG    T+L+   D+       +D   +P  D       +             
Sbjct: 1083 SLLKFDILGHDNPTILKLLKDYTG-----IDERDVPMYDPLVMKSFSDISALNIKPSDVL 1137

Query: 614  --TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
              T G + I +  +  +R  L   +P    D+I +  L     +      +  K+GK   
Sbjct: 1138 NETTGAISIPEFGTRFVRGMLVDTKPKSFADLIRISGLSHGESVWLGNAQSLIKSGK--- 1194

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
                 L+  ++         ++ +M       +    +    + +R+   KKIK E    
Sbjct: 1195 -----LLKDVIA-------CRDDIMTYLIRQNVEPKTAFLIMEDVRKG--KKIKPEHQII 1240

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
                        + +      +   A    Y F K+HA AY + +++ AW K +YP+E+ 
Sbjct: 1241 ------------LKELKVPEWYIESANKIKYMFPKAHATAYVMHAWKFAWYKIYYPLEYY 1288

Query: 789  AASMTLEMDNVE-----------------------------KIK----------KFCQDA 809
            AA  ++  DN +                             K+           +   + 
Sbjct: 1289 AAFFSVRADNFDLFVINQGKEFIEKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIEL 1348

Query: 810  RQFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
                 +I   S+        V    +N I     AI+G+G T A  I+EA   K F ++E
Sbjct: 1349 LARGFKISNISIEQSQATSYVIDKENNAIIPPFIAIQGLGETVANSIIEARNQKVFSTIE 1408

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            D  +R    + + + L +L   G LD    +
Sbjct: 1409 DLKNRTKISRTDLKNLRAL---GVLDHLSET 1436



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            L  H+  S L+  +S   ++D    +Q   I ITD N + +  E ++ +    ++ I 
Sbjct: 324 ELNFHTKMSSLDAIISTQELIDFAVKNQLKTIGITDRNVVQAYPEIAKFSKKQDLKIIY 382


>gi|71894029|ref|YP_278137.1| DNA polymerase III PolC [Mycoplasma synoviae 53]
 gi|71850817|gb|AAZ43426.1| DNA polymerase III alpha subunit [Mycoplasma synoviae 53]
          Length = 1451

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 146/923 (15%), Positives = 293/923 (31%), Gaps = 222/923 (24%)

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
            V    G + L +LVS          + +I  S L+      +++ + G  G +      +
Sbjct: 610  VKNQAGLKELFQLVSIANTKT-FYGAPKIFWSTLKSFKN--ILVGSNGVQGELFDILLLS 666

Query: 163  SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-------------VVQLAYTHEL 209
            S Q  EK +           Y+ +     +D Y +               ++ LA  H  
Sbjct: 667  SRQRVEKYIQKLD-------YIEIPHPDLFDSYLDRNQLTKDQLLESLQILISLAKKHNK 719

Query: 210  PLVATNNSLFLSEEDYEAHDVLMA--VAHSTVVSQKDRPRVT-----PDHYLKNRSEMVS 262
             +++T    +  + D E   VL +  +          +         P+ Y     EM+ 
Sbjct: 720  LIISTAEPRYRHKGDREIFKVLTSFPIRDKRHFLWNYKAVKAGNYSVPNFYFLTTDEMLD 779

Query: 263  IFSDLPE-------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
             FS L +        + N  ++       ++V    L            K     L++  
Sbjct: 780  AFSFLKDKSLIEDIVVNNAHKLNNLIDENIEVIKTDLYP-------PSIKNSSELLKDLV 832

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
                + +  +         +  + R+D EL  I   KF   + I    ++ A  +   VG
Sbjct: 833  YKNAKKKYGE------VLPKLVQDRIDKELIPIINYKFDVVYWISHILVKKANDDGYVVG 886

Query: 376  PGRGSGAGSVTAYALTITDIDPLR------------------------------------ 399
              RGS   S+ A  + IT+++PL                                     
Sbjct: 887  -SRGSVGSSLIANLINITEVNPLEPHYICDNCKHFEVVNNDKITSGYDLDDKNCPNCDSI 945

Query: 400  -----FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                  S+ FE FL      +PD D++F  + +  +  Y +  +G ++  +  T  S+Q 
Sbjct: 946  MDKDGHSIPFETFLGFKADKVPDIDLNFSGEYQIAIHNYTRELFGEDKTFRAGTVSSIQY 1005

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            + A   + +                            I D + F      D        +
Sbjct: 1006 RKAFGFIKKY---------------------------IEDTNTFYSNGFID-------YL 1031

Query: 515  SQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS----DLPVTQFNMKWIEKAGL 568
            ++K   +      HA GIV+      + +  P+          +   T F   ++++  L
Sbjct: 1032 AEKCIDVKVTTGKHAGGIVVLPENLDIEEFTPVNYASDGLEDKEWKTTHFKYDFLKE-NL 1090

Query: 569  IKFDFLGLKTLTLLQ---KSLDFLAQRGVKVDLS-------LIPFDDHETYHLLTTKGTL 618
            +K D LG    T ++   ++   L++   K D +         P +         T G +
Sbjct: 1091 LKLDLLGHSDPTQIRFLEQATGLLSKNIPKKDKNLLKLFSSTEPMEIDPNDINGETTGAI 1150

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
             + +  +   R+ ++  +P    D+I++  L            N  KN  E       LI
Sbjct: 1151 ALPEFGTKFTREIIKTSKPHLFADLISISGLSHGQ--------NVWKNNAED------LI 1196

Query: 679  DPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
                K    ++  ++ +M       + +  S    + +R+  G               S 
Sbjct: 1197 LNENKTLNEIVCCRDDIMNYLIKKGVDASLSFKVTESVRKGKG-------------VDSE 1243

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              K   +  I    F+ + K   Y F ++HA AY +++++  + K +YP+EF A+  +++
Sbjct: 1244 DIKILSTYNIPDWFFDSMQKI-KYMFPRAHAVAYVIMAWRMGYYKLYYPLEFYASFFSVK 1302

Query: 796  MDNVE-------------KIKKFCQD----------------------------ARQFNI 814
                +             KIK   ++                                  
Sbjct: 1303 CSKFDLSAMIDFSKDGYWKIKNKIEEIEKLIRTNNKKDNKKEEDILESLNVALEMYSRGF 1362

Query: 815  QIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
             I    +        +       +    +A+ G+     + I+ A  ++PF ++ DF  R
Sbjct: 1363 TIQNIDIEKSDAYNWIIDKDSKSLIPPFSALDGIEAGAIK-IINARKERPFKTVLDFAKR 1421

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                 ++  ++E L         
Sbjct: 1422 ---SGVSSTIVEKLKELNVFKDL 1441



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +     S  + L+G L+   I+ +       A+ I+D N++FS  EF   A A  I+PI 
Sbjct: 324 IEFNCKSKNNTLDGLLTPEEIVAEAKRQGHSAVGISDYNSIFSFPEFYYAAKANNIKPIY 383

Query: 72  GCQLDI 77
           G    +
Sbjct: 384 GAGFAM 389


>gi|75909952|ref|YP_324248.1| DNA polymerase III subunit alpha [Anabaena variabilis ATCC 29413]
 gi|75703677|gb|ABA23353.1| intein / DNA polymerase III, alpha subunit [Anabaena variabilis ATCC
            29413]
          Length = 450

 Score =  296 bits (759), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 87/298 (29%), Positives = 142/298 (47%), Gaps = 12/298 (4%)

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
            N F      A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T   ++ +K++K+  
Sbjct: 25   NFFVKNGLIASNCFNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTANSNDTDKVQKYIS 84

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLE 866
                 NIQI PP +N   VDF     +I +  +A++ VG      ++EA      F SL 
Sbjct: 85   TCLSMNIQIEPPDINRSGVDFTPVAGKILFGFSAVRNVGQNAIASVLEARETTGEFKSLA 144

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DFC RVD + +NRR LESL++ GA D    +R QL+Q L+ +  +AQ   ++R +   N+
Sbjct: 145  DFCDRVDLRAVNRRTLESLIYCGAFDKIEANRHQLIQDLELVYDWAQSRARDRASGQGNL 204

Query: 927  FAHEKG-----------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            F    G            F      +         +   E+ +LGFY S HPL   + + 
Sbjct: 205  FDLLGGYSSTSTKTANNAFETAPKAKPVLDYPPQEKLRLEKELLGFYVSDHPLKSLRSVA 264

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +      +         + +  M+   ++  T+KG  +  +   +   + EA  FP
Sbjct: 265  PLLTPINLSQLGEQREDTRLCVIVMLNGVKKVMTKKGDAMAILQLEDLTSQSEAVVFP 322


>gi|13357937|ref|NP_078211.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC
            700970]
 gi|170762156|ref|YP_001752460.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|13959349|sp|Q9PQB4|DPO3_UREPA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|11279168|pir||C82898 DNA polymerase III alpha chain 1 UU377 [imported] - Ureaplasma
            urealyticum
 gi|6899360|gb|AAF30786.1|AE002135_2 DNA polymerase III alpha chain 1 [Ureaplasma parvum serovar 3 str.
            ATCC 700970]
 gi|168827733|gb|ACA32995.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 3 str. ATCC 27815]
          Length = 1442

 Score =  296 bits (757), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 160/918 (17%), Positives = 308/918 (33%), Gaps = 203/918 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             I L +      + + ELVS  +  D       I  S+L     + LI+        +  
Sbjct: 604  WINLYIKNQANVKDMYELVSISHT-DMYYTRPTITTSFLANKKDK-LIISNSIHESDLIN 661

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY--------DRYRESQVVQLAYTHEL 209
            A +  + +  ++ +  +  +      +  Q+H  Y         +    +++ LA     
Sbjct: 662  ALYSKNDEEIKRLIQRYDFITLPS--LGSQKHLVYAKKITIENVQKAFKKLIYLALELNK 719

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
             ++ +++  +  ++D + +DV +    +T   +    R   + Y+ +       + D   
Sbjct: 720  IIIYSSSPYYFFKDDKKFYDVYV----NTKGLEGKAHRFANEVYVPDLE-----YIDQKN 770

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            A++    +       L ++    P  I    DD  +  +  L    + G++ +       
Sbjct: 771  AIDELAYLEDEKLINLIINE--NPVHINSWFDDSIQPLKEGLYAPKMEGVDQKTIDYVYH 828

Query: 330  KGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                           QR+  ELN I +  FS  + I    ++ + ++   VG  RGS   
Sbjct: 829  TAKKIYGENLPTIVEQRIKKELNSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGS 887

Query: 384  SVTAYALTITDIDPL---------------------------------------RFSLLF 404
            S+ A  L ITD++PL                                         ++ F
Sbjct: 888  SLVATFLNITDVNPLTPHYLCPNCKKCEFITNADDGFDLAPKSCEQCQTPMLTDGHNIPF 947

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  D   +PD D++F    +     ++++ +G     +  T G++   +A   V + 
Sbjct: 948  ETFLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAQTSAENTVKKY 1007

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
             +  +++   +           VSL                          QK     R 
Sbjct: 1008 FENRFNENKII-------RDSTVSL------------------------YVQKCIDSKRT 1036

Query: 525  ASTHAAGIVIGDRP--LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GI+I  +   +    P      D+      T F  +++    L+KFD LG    
Sbjct: 1037 TGQHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD-SLLKFDILGHDNP 1095

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT---------------TKGTLGIFQLE 624
            T+L+   D+       +D   +P  D       +               T G + I +  
Sbjct: 1096 TILKLLKDYTG-----IDERDVPMYDPLVMKSFSDISALNIKPSDVLNETTGAISIPEFG 1150

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +  +R  L   +P    D+I +  L     +      +  K+GK        L+  ++  
Sbjct: 1151 TRFVRGMLVDTKPKSFADLIRISGLSHGESVWLGNAQSLIKSGK--------LLKDVIA- 1201

Query: 685  TQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
                   ++ +M       +    +    + +R+   KKIK E                +
Sbjct: 1202 ------CRDDIMTYLIRQNVEPKTAFLIMEDVRKG--KKIKPEHQII------------L 1241

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +      +   A    Y F K+HA AY + +++ AW K +YP+E+ AA  ++  DN + 
Sbjct: 1242 KELKVPEWYIESANKIKYMFPKAHATAYVMHAWKFAWYKIYYPLEYYAAFFSVRADNFDL 1301

Query: 801  ----------------------------KIK----------KFCQDARQFNIQIMPPSVN 822
                                        K+           +   +      +I   S+ 
Sbjct: 1302 FVINQGKEFIEKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIE 1361

Query: 823  TPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                   V    +N I     AI+G+G T A  I+EA   K F ++ED  +R    K++R
Sbjct: 1362 QSQATSYVIDKENNAIIPPFIAIQGLGETVANSIIEARNQKVFSTIEDLKNRT---KISR 1418

Query: 880  RVLESLVFAGALDCFGYS 897
              L++L   G LD    +
Sbjct: 1419 TDLKNLRVLGVLDHLSET 1436



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            L  H+  S L+  +S   ++D    +Q   I ITD N + +  E ++ +    ++ I 
Sbjct: 324 ELNFHTKMSSLDAIISTQELIDFAVKNQLKTIGITDRNVVQAYPEIAKFSKKQDLKIIY 382


>gi|294660232|ref|NP_852876.2| DNA polymerase III subunit alpha polC/Gram positive-type [Mycoplasma
            gallisepticum str. R(low)]
 gi|284811887|gb|AAP56444.2| DNA polymerase III alpha subunit polC/Gram positive-type [Mycoplasma
            gallisepticum str. R(low)]
 gi|284930337|gb|ADC30276.1| DNA polymerase III alpha subunit polC/Gram positive-type [Mycoplasma
            gallisepticum str. R(high)]
          Length = 1494

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 152/935 (16%), Positives = 320/935 (34%), Gaps = 223/935 (23%)

Query: 80   QDNLKMTNQGKTPFPTVPSI---VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            +DNL    Q          +   ++    A+G + L +LVS      Q   S ++  S L
Sbjct: 623  EDNLDQITQSNENLFNRIRLRKALVYAKNAQGLKALYKLVSLASTK-QFYGSQKLFWSDL 681

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR-------LLTFKKLFGDRLY---VNL 186
            ++     L++ +   +G I  A  +++++   K        L+    LF   LY   + L
Sbjct: 682  EKY-QNDLLISSHPINGHIVHAAKYDTNENLRKLIKKHSFVLVPLPSLFKQDLYKKNIEL 740

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA--VAHSTVVSQKD 244
                       ++++ +    ++    ++ + +L +E  + +D L+   +    +    D
Sbjct: 741  THVHDL----INRIISICEQEKILYTFSSAAHYLKQEQKQFYDCLITAEITGKKLHHFYD 796

Query: 245  RPRVT----PDHYLKNRSEMVSIFSDLPE-------ALENTVEIARRCSFILQVHAPILP 293
            R   T    PD +++  +E+   FS + +          N  +IA   +    +  P   
Sbjct: 797  RDLSTNQNVPDLHIRKNNEVYHDFSFIQDQEILAKLIYRNGEKIANLFNDEGLLPFPKKL 856

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
               + E  D      ++L        +                 + R+++ELN I +  +
Sbjct: 857  HPPKIEGSD------DKLIELVWNKAKELFGDEINP------IIKSRIEYELNAIIKNGY 904

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------- 399
               + +    ++ +  +   VG  RGS   S+ A    I++++PL+              
Sbjct: 905  GIIYWLAHLLVKKSNDDGYLVG-SRGSVGSSIVALLAGISEVNPLQPYYYCKKCKKTKFV 963

Query: 400  ---------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                                        ++ F  F+       PD D++F    + +   
Sbjct: 964  DNVDDGHDLVNKPCELLDCDGEMRGEGHNIPFASFMGFKGEKTPDIDLNFSSFYQAKAHD 1023

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YV+  +G     +  T  ++Q K A +     L++   +                     
Sbjct: 1024 YVRELFGESHTTRCGTISTMQDKTAYKIAKDYLEITIGE--------------------- 1062

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPM---YR 547
             +  R                 + ++  + R    H  GI++   D+ +    P+     
Sbjct: 1063 EESERLAGWY------------ASEMSEIKRTTGQHPGGILVFPKDKEIEDFCPVNYPAD 1110

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D  S    + F  +++    L+K D L  +  T+L+   +    +        IP +D +
Sbjct: 1111 DKSSKWKTSHFKFEYLHDT-LLKLDILSQEDPTILKYLYEITNVK-----PEEIPNNDPK 1164

Query: 608  TYHLLT----------------TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
               L                  + G LGI +  +   R+ L+  +P  + D+I +  L  
Sbjct: 1165 VLSLFNLDHCLENVNNNPILKDSTGALGIPEFGTKITREILKIAKPASVADLIRVSGLSH 1224

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLS 708
                 ++   N      + IV  H  ++ ++         ++ +M     L      + +
Sbjct: 1225 GT---DVWTNNAA----DLIVDKHYKLNEVIA-------CRDDIMTYLSSLGIENQIAFN 1270

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
              + +R+   KK+K E +K  + F        +S+    +  ++      Y F K+HA A
Sbjct: 1271 IMEDVRKG--KKLKPEYEKIMQEF-------NVSQDYIDSCNKI-----KYMFPKAHATA 1316

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-----------------KIKKFCQ---- 807
            Y +++++ AW K HYP  F AA  + ++   +                 +IK        
Sbjct: 1317 YVLMAWKIAWFKVHYPEAFYAAIFSFKVKEHDIETCINGGIRAITKRYNEIKSLINKTKF 1376

Query: 808  ------------------------DARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAI 842
                                    +  + NI++   S+     + F V +N+IY     I
Sbjct: 1377 AKNKSELTLNKKDEDLMPTYELYLEMLERNIKLEQVSLEHSDALHFVVKNNKIYPPFNTI 1436

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
             G+G   A+ I++   ++ F S  D  ++    K 
Sbjct: 1437 NGLGDEIAKLIVKKRNEEGFKSQADLKTKCKLNKN 1471



 Score = 39.6 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 1   LTQYLEKSPS-FV---HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           L ++L+ +P  F        H+  S+ +G   ++++      ++   IAITD+  +
Sbjct: 307 LPEWLKPTPEEFTNRHEFFFHTKMSVHDGLNDVDDLKKFCEENKLKDIAITDSGVV 362


>gi|17228549|ref|NP_485097.1| DNA polymerase III subunit alpha [Nostoc sp. PCC 7120]
 gi|17130400|dbj|BAB73011.1| DNA polymerase III alpha subunit [Nostoc sp. PCC 7120]
          Length = 450

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 142/298 (47%), Gaps = 12/298 (4%)

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
            N F      A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T   ++ +K++K+  
Sbjct: 25   NFFIKNGLIASNCFNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTANSNDTDKVQKYIS 84

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLE 866
                 NIQI PP +N   VDF     +I +  +A++ VG      ++EA      F SL 
Sbjct: 85   TCLSMNIQIEPPDINRSGVDFTPVAGKILFGFSAVRNVGQNAIASVLEARDTTGEFKSLA 144

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DFC R+D + +NRR LESL++ GA D    +R QL+Q L+ +  +AQ   ++R +   N+
Sbjct: 145  DFCDRIDLRAVNRRTLESLIYCGAFDKIEANRHQLIQDLELVYDWAQSRARDRASGQGNL 204

Query: 927  FAHEKG-----------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            F    G            F      +         +   E+ +LGFY S HPL   + + 
Sbjct: 205  FDLLGGYSSTNTKTANNAFETAPKAKPVLDYPPQEKLRLEKELLGFYVSDHPLKSLRSVA 264

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +      +         + +  M+   ++  T+KG  +  +   +   + EA  FP
Sbjct: 265  PLLTPINLSQLGEQREDTRLCVIVMLNGVKKVMTKKGDAMAILQLEDLTSQSEAVVFP 322


>gi|325522049|gb|EGD00722.1| DNA polymerase III, alpha subunit [Burkholderia sp. TJI49]
          Length = 335

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 107/338 (31%), Positives = 172/338 (50%), Gaps = 12/338 (3%)

Query: 573 FLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            L L  L++++++LD +  +RG   +L  IP +D  TY +L    ++G+FQ+ES      
Sbjct: 1   MLALGMLSMVRRALDMISEKRGETFELQDIPAEDKATYDMLCDGDSMGVFQVESRAQMSM 60

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
           L  ++P C  D++  V++ RPGP+   +   Y  R+ G E +      ++  LK T GV 
Sbjct: 61  LPRLRPQCFYDLVIEVAIVRPGPVQGGMVHPYLRRRQGLEPVTFPSDGMEKALKRTLGVP 120

Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVN 748
           I+QEQVMQ+A L +G+S  EAD LRRAM   K K  ++   +R +SG  + G  +  A  
Sbjct: 121 IFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKRKGGLEPYHDRLVSGMLERGYDREFAEA 180

Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
           IF  +  F +YGF +SHAA++A++ Y +AW++ H P  FLAA +  +        +  QD
Sbjct: 181 IFAQIKGFGEYGFPESHAASFALLVYSSAWLRRHEPAVFLAALLNSQPMGFYSPSQLLQD 240

Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRI----YYSLAAIKGVGTTTARHIMEASADKPFDS 864
           AR+  ++++P  VN    D  +             + ++G+    A  I  A A +PF  
Sbjct: 241 ARRRGVEVLPVDVNVSTWDSVIEGPTTSAPVRLGFSLLRGMRADVAGRIELARAVRPFVD 300

Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQL 901
           + D   R    + +  VL     A AL    G +R   
Sbjct: 301 VADLARRAQLDRHDLLVLAR---ANALRSLAGGNRRAA 335


>gi|171920838|ref|ZP_02932008.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 13 str. ATCC 33698]
 gi|171903036|gb|EDT49325.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 13 str. ATCC 33698]
          Length = 1442

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 162/918 (17%), Positives = 309/918 (33%), Gaps = 203/918 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + L + T    + + ELVS  +  D       I  S+L     + LI+        +  
Sbjct: 604  WVNLYIKTQANVKDMYELVSISHT-DMYYTRPTITTSFLANKKDK-LIISNSVHESDLIN 661

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR--------ESQVVQLAYTHEL 209
            A +  S    +  +  +  +      +  Q+H  Y +            ++V LA     
Sbjct: 662  ALYSKSDDEIKSIMQRYDFITLPS--IGSQKHLVYAQKITLENVQKAFKKLVNLALESNK 719

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
             ++ +++  +  ++D + +DV +    +T   +    R   + Y+ +       + D   
Sbjct: 720  LIIYSSSPYYFLKDDKKFYDVYV----NTKGLEGKSHRFANEEYVPDLE-----YVDQKS 770

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            A++    +       L ++    P+ I    DD  +  +  L    + G++ +       
Sbjct: 771  AIDELAYLEDENLVNLIINE--NPQIINSWFDDKIQPLKEGLYAPKMEGVDQKTIDYVYH 828

Query: 330  KGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                           QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   
Sbjct: 829  TAKKIYGDNLPTIVEQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGS 887

Query: 384  SVTAYALTITDIDPL---------------------------------------RFSLLF 404
            S+ A  L ITD++PL                                         ++ F
Sbjct: 888  SLVATFLNITDVNPLAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPF 947

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  D   +PD D++F    +     ++++ +G     +  T G++  K+A   V + 
Sbjct: 948  ETFLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKY 1007

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
             +  +S+       I  D    +                            QK     R 
Sbjct: 1008 FENRFSE-----NQIVRDSTVSL--------------------------YVQKCIDSKRT 1036

Query: 525  ASTHAAGIVIGDRP--LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GI+I  +   +    P      D+      T F  +++    L+KFD LG    
Sbjct: 1037 TGQHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD-SLLKFDILGHDNP 1095

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT---------------TKGTLGIFQLE 624
            T+L+   D+       +D   +P  D     L +               T G + I +  
Sbjct: 1096 TILKLLKDYTG-----IDDRDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFG 1150

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +  +R  L   +P    D+I +  L     +      +  K+GK        L+  ++  
Sbjct: 1151 TRFVRGMLVDTKPKSFADLIRISGLSHGESVWLGNAQSLIKSGK--------LLKDVIA- 1201

Query: 685  TQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
                   ++ +M       +    +    + +R+   KKIK E                +
Sbjct: 1202 ------CRDDIMTYLIRQNVEPKTAFLIMEDVRKG--KKIKPEHQSI------------L 1241

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +      +   A    Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN + 
Sbjct: 1242 KELKIPEWYIESANKIKYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDL 1301

Query: 801  ----------------------------KIK----------KFCQDARQFNIQIMPPSVN 822
                                        K+           +   +      +I   S+ 
Sbjct: 1302 FVINQGKEFIEKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIE 1361

Query: 823  TPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                   V    +N I     AI+G+G T A  I+EA   K F ++ED  +R    K++R
Sbjct: 1362 QSQATSYVIDKQNNAIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISR 1418

Query: 880  RVLESLVFAGALDCFGYS 897
              L++L   G LD    +
Sbjct: 1419 TDLKNLRELGVLDHLSET 1436



 Score = 54.6 bits (130), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 40/104 (38%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  H+  S L+  +S   ++D    +Q   I ITD N + S  E ++ +    ++ I G
Sbjct: 324 ELNFHTKMSSLDAIISAQELIDFAVKNQLKTIGITDRNVVQSYPEIAKFSKKQDLKIIYG 383

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            + +   +      N           ++  + T   +    E++
Sbjct: 384 LETEELEERIPLALNVRDQNLDDATYVIFDIETTGLFPNFDEII 427


>gi|56807373|ref|ZP_00365358.1| COG0587: DNA polymerase III, alpha subunit [Streptococcus pyogenes
           M49 591]
          Length = 360

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 198/377 (52%), Gaps = 25/377 (6%)

Query: 222 EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS-DLPEALENTVEIARR 280
           ++D E   +  A+  +  +++   P V  D  L +  ++ + +    P+AL+N  ++   
Sbjct: 1   QDDMETLHMCHAIRDNLSLAET--PVVESDQELTDCQQLTTFYQTHCPQALQNLEDLVSG 58

Query: 281 CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +    +   LP F      +  K  + EL+    AGL+         KG   + Y+ R
Sbjct: 59  IYYDFDTNL-KLPHF------NRDKSAKQELQELTEAGLKE--------KGLWKEPYQSR 103

Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
           L  EL +I+ M F  YFLIV D +++ +     +G GRGS AGS+ AYAL IT IDP++ 
Sbjct: 104 LLHELVIISDMGFDDYFLIVWDVLRFGRSKGYYMGMGRGSAAGSLVAYALNITGIDPVQH 163

Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            LLFERFLN +R SMPD DID     R E +RYV+N+YG +  AQI+TF +  +K A+RD
Sbjct: 164 DLLFERFLNKERYSMPDIDIDLPDIYRSEFLRYVRNRYGSDHSAQIVTFSTFGSKQAIRD 223

Query: 461 VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS-RFREARLADPSVDRLLEISQKLE 519
           V +   +P  ++  L K I        SL  + + S  FR+   +     +   I++++E
Sbjct: 224 VFKRFGVPEYELTNLTKKI----GFKDSLATVYEKSISFRQVINSRTEFQKAFAIAKRIE 279

Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
           G  R  S HAAGIV+ D  L+  +P+      D+ +TQ++   +E  GL+K DFLGL+ L
Sbjct: 280 GNPRQTSIHAAGIVMSDDTLTNHIPL--KSGDDMMITQYDAHAVEANGLLKMDFLGLRNL 337

Query: 580 TLLQKSLDFLAQRGVKV 596
           T + K  + +A+     
Sbjct: 338 TFVXKMQEKVAKDYGCQ 354


>gi|186701836|ref|ZP_02971504.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 6 str. ATCC 27818]
 gi|186701125|gb|EDU19407.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 6 str. ATCC 27818]
          Length = 1442

 Score =  294 bits (754), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 161/918 (17%), Positives = 307/918 (33%), Gaps = 203/918 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             I L +      + + ELVS  +  D       I  S+L     + LI+        +  
Sbjct: 604  WINLYIKNQVNVKDMYELVSISHT-DMYYTRPTITTSFLANKKDK-LIISNSVHESDLIN 661

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY--------DRYRESQVVQLAYTHEL 209
            A +  S    +  +  +  +      +  Q+H  Y         +    ++V LA     
Sbjct: 662  ALYSKSDDEIKSIMQRYDFITLPS--IGSQKHLVYAKKITIENVQKAFKKLVYLALELNK 719

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
             ++ +++  +  ++D + +DV +    +T   +    R   + Y+ +       + D   
Sbjct: 720  IIIYSSSPYYFLKDDKKFYDVYV----NTKGLEGKSHRFANEEYVPDLE-----YVDQKS 770

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            A++    +       L ++    P+ I    DD  +  +  L    + G++ +       
Sbjct: 771  AIDELAYLEDENLINLIINE--NPQIINSWFDDKIQPLKEGLYAPKMEGVDQKTIDYVYH 828

Query: 330  KGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                           QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   
Sbjct: 829  TAKKIYGDNLPTIVEQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGS 887

Query: 384  SVTAYALTITDIDPL---------------------------------------RFSLLF 404
            S+ A  L ITD++PL                                         ++ F
Sbjct: 888  SLVATFLNITDVNPLTPHYLCPNCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPF 947

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  D   +PD D++F    +     ++++ +G     +  T G++   +A   V + 
Sbjct: 948  ETFLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAQTSAENTVKKY 1007

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
             +  +++   +           VSL                          QK     R 
Sbjct: 1008 FENRFNENKII-------RDSTVSL------------------------YVQKCIDSKRT 1036

Query: 525  ASTHAAGIVIGDRP--LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GI+I  +   +    P      D+      T F  +++    L+KFD LG    
Sbjct: 1037 TGQHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD-SLLKFDILGHDNP 1095

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT---------------TKGTLGIFQLE 624
            T+L+   D+       +D   +P  D       +               T G + I +  
Sbjct: 1096 TILKLLKDYTG-----IDERDVPMYDPLVMKSFSDISALNIKPSDVLNETTGAISIPEFG 1150

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +  +R  L   +P    D+I +  L     +      +  K+GK        L+  ++  
Sbjct: 1151 TRFVRGMLVDTKPKSFADLIRISGLSHGESVWLGNAQSLIKSGK--------LLKDVIA- 1201

Query: 685  TQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
                   ++ +M       +    +    + +R+   KKIK E                +
Sbjct: 1202 ------CRDDIMTYLIRQNVEPKTAFLIMEDVRKG--KKIKPEHQII------------L 1241

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +      +   A    Y F K+HA AY + +++ AW K +YP+E+ AA  ++  DN + 
Sbjct: 1242 KELKVPEWYIESANKIKYMFPKAHATAYVMHAWKFAWYKIYYPLEYYAAFFSVRADNFDL 1301

Query: 801  ----------------------------KIK----------KFCQDARQFNIQIMPPSVN 822
                                        K+           +   +      +I   S+ 
Sbjct: 1302 FVINQGKEFIEKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIE 1361

Query: 823  TPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                   V    +N I     AI+G+G T A  I+EA   K F ++ED  +R    K++R
Sbjct: 1362 QSQATSYVIDKQNNAIIPPFIAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISR 1418

Query: 880  RVLESLVFAGALDCFGYS 897
              L++L   G LD    +
Sbjct: 1419 TDLKNLRELGVLDHLSET 1436



 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 75/200 (37%), Gaps = 15/200 (7%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  H+  S L+  +S   ++D    +Q   I ITD N + +  E ++ +    ++ I G
Sbjct: 324 ELNFHTKMSSLDAIISAQELIDFAVKNQLKTIGITDRNVVQAYPEIAKFSKKQDLKIIYG 383

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            + +        + N           ++  + T   +    E++    ++ Q  + +   
Sbjct: 384 LETEELEDQIPLVLNVRDQNLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDK 443

Query: 133 LSWLQ---EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           + +L    +   E +  LT      I +    N+    +  LL  K++F + +   L  H
Sbjct: 444 IQFLVKPIQQINENITNLTN-----ISQEMVNNAIDE-KTALLKIKEIFDNHI---LVAH 494

Query: 190 RGYD---RYRESQVVQLAYT 206
            G +    +   ++++    
Sbjct: 495 NGINFDINFINQRLLKWGLE 514


>gi|301631164|ref|XP_002944676.1| PREDICTED: DNA polymerase III subunit alpha-like, partial [Xenopus
           (Silurana) tropicalis]
          Length = 298

 Score =  294 bits (753), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 149/292 (51%), Positives = 191/292 (65%), Gaps = 9/292 (3%)

Query: 178 FGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
           F  R Y+ LQR  R  D    +    LA   +LP+VAT+   F+ E++YEAH+  + +A 
Sbjct: 11  FPHRFYIELQRAGRPDDEAHVAAAAPLAARLQLPVVATHPIQFMDEDEYEAHEARVCIAE 70

Query: 237 STVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
             +++   R  R T + Y K  ++M ++F+DLP AL+NTVEIARRCS  L +  P LP F
Sbjct: 71  GEILANPRRVRRFTREQYFKTTAQMQALFADLPSALQNTVEIARRCSLTLLLGKPQLPDF 130

Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMK 352
                  I    E   R  +  GL+ RL      A  +    Q Y +RL+FEL+ I +M 
Sbjct: 131 PTPNGMPI----EEYFRYASHQGLKERLEHLYPHAAEREQQRQRYLERLEFELDTILKMG 186

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           F GYFLIV DFIQWAK N  PVGPGRGSGAGS+ AYAL ITD+DPL++ LLFERFLNP+R
Sbjct: 187 FPGYFLIVGDFIQWAKANGCPVGPGRGSGAGSLVAYALKITDLDPLQYKLLFERFLNPER 246

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           +SMPDFDIDFCQ  RD VI YV++KYG + V+QI TFG++ AKAA+RDVGRA
Sbjct: 247 VSMPDFDIDFCQANRDRVIDYVKDKYGKDAVSQIATFGTMAAKAAIRDVGRA 298


>gi|195867849|ref|ZP_03079848.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 9 str. ATCC 33175]
 gi|195660426|gb|EDX53684.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 9 str. ATCC 33175]
          Length = 1442

 Score =  294 bits (753), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 162/918 (17%), Positives = 309/918 (33%), Gaps = 203/918 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + L + T    + + ELVS  +  D       I  S+L     + LI+        +  
Sbjct: 604  WVNLYIKTQANVKDMYELVSISHT-DMYYTRPTITTSFLANKKDK-LIISNSVHESDLIN 661

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY--------DRYRESQVVQLAYTHEL 209
            A +  S    +  +  +  +      +  Q+H  Y         +    ++V LA     
Sbjct: 662  ALYSKSDDEIKSIMQRYDFITLPS--IGSQKHLVYAKKITLENVQKAFKKLVSLALELNK 719

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
             ++ +++  +  ++D + +DV +    +T   +    R   + Y+ +       + D   
Sbjct: 720  IIIYSSSPYYFLKDDKKFYDVYV----NTKGLEGKSHRFANEEYVPDLE-----YVDQKS 770

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            A++    +       L ++    P+ I    DD  +  +  L    + G++ +       
Sbjct: 771  AIDELAYLEDENLINLIINE--NPQIINSWFDDKIQPLKEGLYAPKMEGVDQKTIDYVYH 828

Query: 330  KGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                           QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   
Sbjct: 829  TAKKIYGDNLPTIVEQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGS 887

Query: 384  SVTAYALTITDIDPL---------------------------------------RFSLLF 404
            S+ A  L ITD++PL                                         ++ F
Sbjct: 888  SLVATFLNITDVNPLAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPF 947

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  D   +PD D++F    +     ++++ +G     +  T G++  K+A   V + 
Sbjct: 948  ETFLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKY 1007

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
             +  +S+       I  D    +                            QK     R 
Sbjct: 1008 FENRFSE-----NQIVRDSTVSL--------------------------YVQKCIDSKRT 1036

Query: 525  ASTHAAGIVIGDRP--LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GI+I  +   +    P      D+      T F  +++    L+KFD LG    
Sbjct: 1037 TGQHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD-SLLKFDILGHDNP 1095

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT---------------TKGTLGIFQLE 624
            T+L+   D+       +D   +P  D     L +               T G + I +  
Sbjct: 1096 TILKLLKDYTG-----IDDRDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFG 1150

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +  +R  L   +P    D+I +  L     +      +  K+GK        L+  ++  
Sbjct: 1151 TRFVRGMLVDTKPKSFADLIRISGLSHGESVWLGNAQSLIKSGK--------LLKDVIA- 1201

Query: 685  TQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
                   ++ +M       +    +    + +R+   KKIK E                +
Sbjct: 1202 ------CRDDIMTYLIRQNVEPKTAFLIMEDVRKG--KKIKPEHQSI------------L 1241

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +      +   A    Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN + 
Sbjct: 1242 KELKIPEWYIESANKIKYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDL 1301

Query: 801  ----------------------------KIK----------KFCQDARQFNIQIMPPSVN 822
                                        K+           +   +      +I   S+ 
Sbjct: 1302 FVINQGKEFIEKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIE 1361

Query: 823  TPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                   V    +N I     AI+G+G T A  I+EA   K F ++ED  +R    K++R
Sbjct: 1362 QSQATSYVIDKQNNAIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISR 1418

Query: 880  RVLESLVFAGALDCFGYS 897
              L++L   G LD    +
Sbjct: 1419 TDLKNLRELGVLDHLSET 1436



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 40/104 (38%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  H+  S L+  +S   ++D    +Q   I ITD N + S  E ++ +    ++ I G
Sbjct: 324 ELNFHTKMSSLDAIISAQELIDFAVKNQLKTIGITDRNVVQSYPEIAKFSKKQDLKIIYG 383

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            + +   +      N           ++  + T   +    E++
Sbjct: 384 LETEELEERIPLALNVRDQNLDDATYVIFDIETTGLFPNFDEII 427


>gi|323351878|ref|ZP_08087529.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
           sanguinis VMC66]
 gi|322121935|gb|EFX93667.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
           sanguinis VMC66]
          Length = 485

 Score =  294 bits (752), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 138/532 (25%), Positives = 233/532 (43%), Gaps = 77/532 (14%)

Query: 3   QYLEKSPSFV-HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           Q + K  + V  L   + YS ++  + +   + K        + + D +NL+ A  F ++
Sbjct: 26  QSMFKEKNVVIQLDTKTVYSFMDSLIPIKKYVQKAKELGYSHLGMMDVDNLYGAYHFLEE 85

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
           A +AG+QP++G +L +                     + LL   ++GY+ L++ VS + +
Sbjct: 86  AESAGLQPLLGLELSL-------------IKAEQELHLRLLALDSQGYRNLMK-VSTLKM 131

Query: 122 LDQGKQSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
           + Q         +W       +GL ++     G            VA+  L         
Sbjct: 132 MGQ--------KNWEDFQHLFKGLAVIVPAFDG------------VADLDL--------- 162

Query: 181 RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     G D Y              P +  +   +    D E   +L A+  +  +
Sbjct: 163 ----------GLDFYVGVFPATPKQEFGRPTLPLHTVRYFDTGDLETLQMLRAIRENASL 212

Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +     +    +L     +   F +  PE+L N  ++ R   + +      LPRF    
Sbjct: 213 REIG--SLPNHEFLLGPDALAGAFKETFPESLANLEKLVRHVHYDIN-RELKLPRF---- 265

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             + ++    ELR ++ AGL+ R        G   + Y++RLD EL+VI +M F  YFLI
Sbjct: 266 --NRERPAVEELRERSEAGLKKR--------GLTGKLYQERLDQELDVIHQMGFDDYFLI 315

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V D +++ +     +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD D
Sbjct: 316 VWDLLRFGRSQGYYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDID 375

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           ID     R E IRYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I
Sbjct: 376 IDIPDVYRPEFIRYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKI 435

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY-RHASTHAA 530
               +      A   +  FR+   +     +  +I++K + +  R  ST  A
Sbjct: 436 RFGDSLT---SAYEKNMAFRQIINSKLEYQKAFDIAKKSKVIPVRLLSTQPA 484


>gi|225550655|ref|ZP_03771604.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 2 str. ATCC 27814]
 gi|225379809|gb|EEH02171.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 2 str. ATCC 27814]
          Length = 1442

 Score =  293 bits (751), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 164/918 (17%), Positives = 309/918 (33%), Gaps = 203/918 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + L + T    + + ELVS  +  D       I  S+L     + LI+        +  
Sbjct: 604  WVNLYIKTQANVKDMYELVSISHT-DMYYTRPTITTSFLANKKDK-LIISNSVHESDLIN 661

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY--------DRYRESQVVQLAYTHEL 209
            A +  S    +  +  +  +      +  Q+H  Y         +    ++V LA     
Sbjct: 662  ALYSKSDDEIKSIMQRYDFITLPS--IGSQKHLVYAKKITLENVQKAFKKLVSLALESNK 719

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
             ++ +++  +  ++D + +DV +    +T   +    R   + Y+ +       + D   
Sbjct: 720  LIIYSSSPYYFLKDDKKFYDVYV----NTKGLEGKSHRFANEEYVPDLE-----YVDQKS 770

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            A++    +       L ++    P+ I    DD  +  +  L    + G++ +       
Sbjct: 771  AIDELAYLEDENLINLIINE--NPQIINSWFDDKIQPLKEGLYAPKMEGVDQKTIDYVYH 828

Query: 330  KGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                           QR+  ELN I +  FS  + I    ++ + K+   VG  RGS   
Sbjct: 829  TAKKIYGDNLPTIVEQRIKKELNSIIKHGFSVVYWISHLLVEKSMKDGYGVG-SRGSVGS 887

Query: 384  SVTAYALTITDIDPL---------------------------------------RFSLLF 404
            S+ A  L ITD++PL                                         ++ F
Sbjct: 888  SLVATFLNITDVNPLAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPF 947

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  D   +PD D++F    +     ++++ +G     +  T G++  K+A   V + 
Sbjct: 948  ETFLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKY 1007

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
             +  +S+       I  D    +                            QK     R 
Sbjct: 1008 FENRFSE-----NQIVRDSTVSL--------------------------YVQKCIDSKRT 1036

Query: 525  ASTHAAGIVIGDRP--LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GI+I  +   +    P      D+      T F  +++    L+KFD LG    
Sbjct: 1037 TGQHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD-SLLKFDILGHDNP 1095

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT---------------TKGTLGIFQLE 624
            T+L+   D+       +D   +P  D     L +               T G + I +  
Sbjct: 1096 TILKLLKDYTG-----IDDRDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFG 1150

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +  +R  L   +P    D+I +  L     +      +  K+GK        L+  ++  
Sbjct: 1151 TRFVRGMLVDTKPKSFADLIRISGLSHGESVWLGNAQSLIKSGK--------LLKDVIA- 1201

Query: 685  TQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
                   ++ +M       +    +    + +R+   KKIK E                +
Sbjct: 1202 ------CRDDIMTYLIRQNVEPKTAFLIMEDVRKG--KKIKPEHQSI------------L 1241

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +      +   A    Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN + 
Sbjct: 1242 KELKIPEWYIESANKIKYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDL 1301

Query: 801  ----------------------------KIK----------KFCQDARQFNIQIMPPSVN 822
                                        K+           +   +      +I   S+ 
Sbjct: 1302 FVINQGKEFIEKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIE 1361

Query: 823  TPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                   V    +N I     AI+G+G T A  I+EA   K F ++ED  +R    K++R
Sbjct: 1362 QSQATSYVIDKQNNAIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISR 1418

Query: 880  RVLESLVFAGALDCFGYS 897
              L++L   G LD    +
Sbjct: 1419 TDLKNLRELGVLDHLSET 1436



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 40/104 (38%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  H+  S L+  +S   ++D    +Q   I ITD N + S  E ++ +    ++ I G
Sbjct: 324 ELNFHTKMSSLDAIISAQELIDFAVKNQLKTIGITDRNVVQSYPEIAKFSKKQDLKIIYG 383

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            + +   +      N           ++  + T   +    E++
Sbjct: 384 LETEELEERIPLALNVRDQNLDDATYVIFDIETTGLFPNFDEII 427


>gi|209554353|ref|YP_002284813.1| DNA polymerase III PolC [Ureaplasma urealyticum serovar 10 str. ATCC
            33699]
 gi|209541854|gb|ACI60083.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 10 str. ATCC 33699]
          Length = 1442

 Score =  293 bits (751), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 162/918 (17%), Positives = 310/918 (33%), Gaps = 203/918 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + L + T    + + ELVS  +  D       I  S+L     + LI+        +  
Sbjct: 604  WVNLYIKTQANVKDMYELVSISHT-DMYYTRPTITTSFLANKKDK-LIISNSVHESDLIN 661

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY--------DRYRESQVVQLAYTHEL 209
            A +  S+   +  +  +  +      +  Q+H  Y         +    ++V LA     
Sbjct: 662  ALYSKSNDEIKSIMQRYDFITLPS--IGSQKHLVYAKKITLENVQKAFKKLVSLALELNK 719

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
             ++ +++  +  ++D + +DV +    +T   +    R   + Y+ +       + D   
Sbjct: 720  IIIYSSSPYYFLKDDKKFYDVYV----NTKGLEGKSHRFANEEYVPDLE-----YVDQKS 770

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            A++    +       L ++    P+ I    DD  +  +  L    + G++ +       
Sbjct: 771  AIDELAYLEDENLINLIINE--NPQIINSWFDDKIQPLKEGLYAPKMEGVDQKTIDYVYH 828

Query: 330  KGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                           QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   
Sbjct: 829  TAKKIYGDNLPTIVEQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGS 887

Query: 384  SVTAYALTITDIDPL---------------------------------------RFSLLF 404
            S+ A  L ITD++PL                                         ++ F
Sbjct: 888  SLVATFLNITDVNPLAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPF 947

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  D   +PD D++F    +     ++++ +G     +  T G++  K+A   V + 
Sbjct: 948  ETFLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKY 1007

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
             +  +S+       I  D    +                            QK     R 
Sbjct: 1008 FENRFSE-----NQIVRDSTVSL--------------------------YVQKCIDSKRT 1036

Query: 525  ASTHAAGIVIGDRP--LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GI+I  +   +    P      D+      T F  +++    L+KFD LG    
Sbjct: 1037 TGQHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD-SLLKFDILGHDNP 1095

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT---------------TKGTLGIFQLE 624
            T+L+   D+       +D   +P  D     L +               T G + I +  
Sbjct: 1096 TILKLLKDYTG-----IDDRDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFG 1150

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +  +R  L   +P    D+I +  L     +      +  K+GK        L+  ++  
Sbjct: 1151 TRFVRGMLVDTKPKSFADLIRISGLSHGESVWLGNAQSLIKSGK--------LLKDVIA- 1201

Query: 685  TQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
                   ++ +M       +    +    + +R+   KKIK E                +
Sbjct: 1202 ------CRDDIMTYLIRQNVEPKTAFLIMEDVRKG--KKIKPEHQSI------------L 1241

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +      +   A    Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN + 
Sbjct: 1242 KELKIPEWYIESANKIKYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDL 1301

Query: 801  ----------------------------KIK----------KFCQDARQFNIQIMPPSVN 822
                                        K+           +   +      +I   S+ 
Sbjct: 1302 FVINQGKEFIEKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIE 1361

Query: 823  TPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                   V    +N I     AI+G+G T A  I+EA   K F ++ED  +R    K++R
Sbjct: 1362 QSQATSYVIDKQNNAIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISR 1418

Query: 880  RVLESLVFAGALDCFGYS 897
              L++L   G LD    +
Sbjct: 1419 TDLKNLRELGVLDHLSET 1436



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 40/104 (38%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  H+  S L+  +S   ++D    +Q   I ITD N + S  E ++ +    ++ I G
Sbjct: 324 ELNFHTKMSSLDAIISAQELIDFAVKNQLKTIGITDRNVVQSYPEIAKFSKKQDLKIIYG 383

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            + +   +      N           ++  + T   +    E++
Sbjct: 384 LETEELEERIPLALNVRDQNLDDATYVIFDIETTGLFPNFDEII 427


>gi|185178976|ref|ZP_02964733.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 5 str. ATCC 27817]
 gi|225551037|ref|ZP_03771983.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 8 str. ATCC 27618]
 gi|184209258|gb|EDU06301.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 5 str. ATCC 27817]
 gi|225378852|gb|EEH01217.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 8 str. ATCC 27618]
          Length = 1442

 Score =  293 bits (751), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 162/918 (17%), Positives = 309/918 (33%), Gaps = 203/918 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + L + T    + + ELVS  +  D       I  S+L     + LI+        +  
Sbjct: 604  WVNLYIKTQANVKDMYELVSISHT-DMYYTRPTITTSFLANKKDK-LIISNSVHESDLIN 661

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY--------DRYRESQVVQLAYTHEL 209
            A +  S    +  +  +  +      +  Q+H  Y         +    ++V LA     
Sbjct: 662  ALYSKSDDEIKSIMQRYDFITLPS--IGSQKHLVYAKKITLENVQKAFKKLVSLALELNK 719

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
             ++ +++  +  ++D + +DV +    +T   +    R   + Y+ +       + D   
Sbjct: 720  IIIYSSSPYYFLKDDKKFYDVYV----NTKGLEGKSHRFANEEYVPDLE-----YVDQKS 770

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            A++    +       L ++    P+ I    DD  +  +  L    + G++ +       
Sbjct: 771  AIDELAYLEDENLINLIINE--NPQIINSWFDDKIQPLKEGLYAPKMEGVDQKTIDYVYH 828

Query: 330  KGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                           QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   
Sbjct: 829  TAKKIYGDNLPTIIEQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGS 887

Query: 384  SVTAYALTITDIDPL---------------------------------------RFSLLF 404
            S+ A  L ITD++PL                                         ++ F
Sbjct: 888  SLVATFLNITDVNPLAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPF 947

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  D   +PD D++F    +     ++++ +G     +  T G++  K+A   V + 
Sbjct: 948  ETFLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKY 1007

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
             +  +S+       I  D    +                            QK     R 
Sbjct: 1008 FENRFSE-----NQIVRDSTVSL--------------------------YVQKCIDSKRT 1036

Query: 525  ASTHAAGIVIGDRP--LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GI+I  +   +    P      D+      T F  +++    L+KFD LG    
Sbjct: 1037 TGQHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD-SLLKFDILGHDNP 1095

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT---------------TKGTLGIFQLE 624
            T+L+   D+       +D   +P  D     L +               T G + I +  
Sbjct: 1096 TILKLLKDYTG-----IDDRDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFG 1150

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +  +R  L   +P    D+I +  L     +      +  K+GK        L+  ++  
Sbjct: 1151 TRFVRGMLVDTKPKSFADLIRISGLSHGESVWLGNAQSLIKSGK--------LLKDVIA- 1201

Query: 685  TQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
                   ++ +M       +    +    + +R+   KKIK E                +
Sbjct: 1202 ------CRDDIMTYLIRQNVEPKTAFLIMEDVRKG--KKIKPEHQSI------------L 1241

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +      +   A    Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN + 
Sbjct: 1242 KELKIPEWYIESANKIKYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDL 1301

Query: 801  ----------------------------KIK----------KFCQDARQFNIQIMPPSVN 822
                                        K+           +   +      +I   S+ 
Sbjct: 1302 FVINQGKEFIEKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIE 1361

Query: 823  TPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                   V    +N I     AI+G+G T A  I+EA   K F ++ED  +R    K++R
Sbjct: 1362 QSQATSYVIDKQNNAIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISR 1418

Query: 880  RVLESLVFAGALDCFGYS 897
              L++L   G LD    +
Sbjct: 1419 TDLKNLRELGVLDHLSET 1436



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            L  H+  S L+  +S   ++D    +Q   I +TD N + S  E ++ +    ++ I 
Sbjct: 324 ELNFHTKMSSLDAIISAQELIDFAVKNQLKTIGVTDRNVVQSYPEIAKFSKKQDLKIIY 382


>gi|158333930|ref|YP_001515102.1| DNA polymerase III subunit alpha [Acaryochloris marina MBIC11017]
 gi|158304171|gb|ABW25788.1| DNA polymerase III alpha subunit, putative [Acaryochloris marina
            MBIC11017]
          Length = 446

 Score =  293 bits (750), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 88/284 (30%), Positives = 141/284 (49%), Gaps = 7/284 (2%)

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A   FNKSH+ AY  ++YQTA++K +YPVE++AA +T    + +K++K+   A    I++
Sbjct: 34   AANCFNKSHSTAYGYVTYQTAYLKANYPVEYMAALLTANSGDQDKVQKYIATALSMGIEV 93

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSK 875
             PP +N   VDF   D  I + L+A++ +G      I+ A   D  F+SL + C RVD +
Sbjct: 94   EPPDINRSGVDFTPLDKNILFGLSAVRNLGQGAIEAILAARDEDGGFESLAELCDRVDPR 153

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AH 929
             +NRR LE+L+++GALD F  +R QL+  L+ I ++AQ   K+R     N+F        
Sbjct: 154  VVNRRALEALIYSGALDAFDTNRNQLVHDLELILEWAQSRAKDRAIGQGNLFDIMGGEGD 213

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
               +       E       S + + E+ +LGFY S HPL   +   R M           
Sbjct: 214  APTSLETAPKAEPVEDFQESEKLKLEKEILGFYISNHPLREIERPARLMAPISLANLEEQ 273

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 +    ++   +   T+KG R+  V   + + + E   FP
Sbjct: 274  PEKTTVSAIVLLTEVKPIITKKGDRMAIVQMEDLSGKAEGVVFP 317


>gi|171920237|ref|ZP_02690314.2| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 1 str. ATCC 27813]
 gi|171902634|gb|EDT48923.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 1 str. ATCC 27813]
          Length = 1442

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 161/918 (17%), Positives = 308/918 (33%), Gaps = 203/918 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + L + T    + + ELVS  +  D       I  S+L     + LI+        +  
Sbjct: 604  WVNLYIKTQANVKDMYELVSISHT-DMYYTRPTITTSFLANKKDK-LIISNSVHESDLIN 661

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------RYRESQVVQLAYTHEL 209
            A +  S    +  +  +  +      +  Q+H  Y         +    ++V LA     
Sbjct: 662  ALYSKSDDEIKSIIQRYDFITLPS--IGSQKHLVYVKKITLENVQKAFKKLVSLALELNK 719

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
             ++ +++  +  ++D + +DV +    +T   +    R   + Y+ +       + D   
Sbjct: 720  IIIYSSSPYYFLKDDKKFYDVYV----NTKGLEGKSHRFANEEYVPDLE-----YVDQKS 770

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            A++    +       L ++    P+ I    DD  +  +  L    + G++ +       
Sbjct: 771  AIDELAYLEDENLINLIINE--NPQIINSWFDDKIQPLKEGLYAPKMEGVDQKTIDYVYH 828

Query: 330  KGYH------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                           QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   
Sbjct: 829  TAKKIYGDNLPTIVEQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGS 887

Query: 384  SVTAYALTITDIDPL---------------------------------------RFSLLF 404
            S+ A  L ITD++PL                                         ++ F
Sbjct: 888  SLVATFLNITDVNPLTPHYLCPNCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPF 947

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  D   +PD D++F    +     ++++ +G     +  T G++   +A   V + 
Sbjct: 948  ETFLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAQTSAENTVKKY 1007

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
             +  +++   +           VSL                          QK     R 
Sbjct: 1008 FENRFNENKII-------RDSTVSL------------------------YVQKCIDSKRT 1036

Query: 525  ASTHAAGIVIGDRP--LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GI+I  +   +    P      D+      T F  +++    L+KFD LG    
Sbjct: 1037 TGQHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD-SLLKFDILGHDNP 1095

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT---------------TKGTLGIFQLE 624
            T+L+   D+       +D   +P  D       +               T G + I +  
Sbjct: 1096 TILKLLKDYTG-----IDERDVPMYDPLVMKSFSDISALNIKPSDVLNETTGAISIPEFG 1150

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +  +R  L   +P    D+I +  L     +      +  K+GK        L+  ++  
Sbjct: 1151 TRFVRGMLVDTKPKSFADLIRISGLSHGESVWLGNAQSLIKSGK--------LLKDVIA- 1201

Query: 685  TQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
                   ++ +M       +    +    + +R+   KKIK E                +
Sbjct: 1202 ------CRDDIMTYLIRQNVEPKTAFLIMEDVRKG--KKIKPEHQII------------L 1241

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +      +   A    Y F K+HA AY + +++ AW K +YP+E+ AA  ++  DN + 
Sbjct: 1242 KELKVPEWYIESANKIKYMFPKAHATAYVMHAWKFAWYKIYYPLEYYAAFFSVRADNFDL 1301

Query: 801  ----------------------------KIK----------KFCQDARQFNIQIMPPSVN 822
                                        K+           +   +      +I   S+ 
Sbjct: 1302 FVINQGKEFIEKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIE 1361

Query: 823  TPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                   V    +N I     AI+G+G T A  I+EA   K F ++ED  +R    K++R
Sbjct: 1362 QSQATSYVIDKQNNAIIPPFIAIQGLGETVANSIIEARNQKVFSTIEDLKNRT---KISR 1418

Query: 880  RVLESLVFAGALDCFGYS 897
              L++L   G LD    +
Sbjct: 1419 TDLKNLRELGVLDHLSET 1436



 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            L  H+  S L+G +S   ++D    +Q   I ITD N + +  E ++ +    ++ I 
Sbjct: 324 ELNFHTKMSSLDGIISAQELIDFAVKNQLKTIGITDRNVVQAYPEIAKFSKKQDLKIIY 382


>gi|291536050|emb|CBL09162.1| DNA polymerase III, alpha subunit (gram-positive type) [Roseburia
           intestinalis M50/1]
 gi|291538543|emb|CBL11654.1| DNA polymerase III, alpha subunit (gram-positive type) [Roseburia
           intestinalis XB6B4]
          Length = 609

 Score =  293 bits (749), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 117/663 (17%), Positives = 225/663 (33%), Gaps = 149/663 (22%)

Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                  ++RLD ELN I    ++  ++I    +  + ++   VG  RGS   S  A   
Sbjct: 4   EELPAIVKERLDRELNSIISNGYAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFAATMS 62

Query: 391 TITDIDPLR---------------------------------------------FSLLFE 405
            IT+++PL+                                             F + FE
Sbjct: 63  GITEVNPLQAHYRCPNCKYSDFDSPEVKAFSGRSGCDMPDKICPVCGEKLVKDGFDIPFE 122

Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            FL       PD D++F  + + +   Y +  +G+ +  +  T G+L  K A   +    
Sbjct: 123 TFLGFKGNKEPDIDLNFSGEYQSKAHAYCEVIFGYGQTFRAGTIGTLADKTAFGYIKNYY 182

Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
                                            R     +  +DR++   Q   G+ R  
Sbjct: 183 -------------------------------EERGIHKRNCEIDRIV---QGCVGVRRTT 208

Query: 526 STHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
             H  GIV+      ++   P+             T F+   I+   L+K D LG    T
Sbjct: 209 GQHPGGIVVLPVGEEINTFTPVQHPANDMTTATVTTHFDYHSIDH-NLLKLDILGHDDPT 267

Query: 581 LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           +++   D        +D   IP DD     L      LG+   +  G+     G+     
Sbjct: 268 MIRMLQDLTG-----IDPVTIPLDDEAVMSLFKNTSALGVTPEDIGGIPLGCLGIPEFGT 322

Query: 641 EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVMQIA 699
           E  + +V   +P    +++  +   +G +  + +   LI+  L      I  ++ +M   
Sbjct: 323 EFAMQMVIDAKPQEFSDLIRISGLSHGTDVWLGNAQTLIEQGLATISTAICTRDDIMIYL 382

Query: 700 QLLS-----GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
             +       +++ E+    + + ++ KEEM             + + +    +  ++  
Sbjct: 383 IQMGLDSEQSFTIMESVRKGKGLKEEWKEEM-----------RAHDVPEWYIDSCLKI-- 429

Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKT------------------HYPVEFLAA------ 790
               Y F K+HAAAY +++++ A+ K                   +Y +           
Sbjct: 430 ---KYMFPKAHAAAYVMMAWRIAYCKVYYPLAYYAAYFSIRATGFNYEIMCQGRERLTYF 486

Query: 791 ---------SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLA 840
                    S++ +  +V +  K  Q+         P  +     D F++ D ++  +L 
Sbjct: 487 QKDYERRKDSLSKKEQDVYRDMKIVQEMYARGFDFTPIDIYRAKPDRFQIIDGKLMPALN 546

Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            I G+G   A  + EA+ D  F S +DF  R  + K    ++  L   G  D    +++ 
Sbjct: 547 TIDGMGDNAAIAVAEAAKDGKFLSRDDFRQRTKATKTVIDLMGDLGLLG--DMPESNQLS 604

Query: 901 LLQ 903
           L  
Sbjct: 605 LFD 607


>gi|282897962|ref|ZP_06305957.1| hypothetical protein CRD_02527 [Raphidiopsis brookii D9]
 gi|281197106|gb|EFA72007.1| hypothetical protein CRD_02527 [Raphidiopsis brookii D9]
          Length = 447

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 84/289 (29%), Positives = 139/289 (48%), Gaps = 12/289 (4%)

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T    + +K++K+  +     I+I
Sbjct: 34   ASNCFNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTANSGDTDKVQKYLNNCNNMGIEI 93

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSK 875
             PP +N   +DF   D +I +  +A++ VG      I++A      F SL DFC R+D +
Sbjct: 94   DPPDINRSGLDFTPADQKILFGFSAVRNVGQNAIAAILDAREKGAEFKSLGDFCDRIDLR 153

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG--- 932
             +NRR LESL+  GA D    +R QL++ L+ + ++AQ   K+R     N+F        
Sbjct: 154  VVNRRTLESLIQCGAFDKIESNRHQLVKDLELVYEWAQSRAKDRAIGQGNLFDFMGAGTR 213

Query: 933  --------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                     F      +  S      +   E+ +LGFY S HPL   K     +      
Sbjct: 214  NASTSSNNGFKSIPKADPVSDYPPQEKLRMEKELLGFYVSAHPLKNIKQSSSLLAPINLV 273

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +       N + +  M+   ++  T+KG ++  +   +     EA  FP
Sbjct: 274  DLGEQKDKNLVCVVVMLNHVKKVMTKKGEQMAILQIEDLTTTSEAVVFP 322


>gi|313798984|gb|ADR82148.1| DNA polymerase III alpha subunit [Mycoplasma sp. 1220]
          Length = 337

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 132/346 (38%), Positives = 202/346 (58%), Gaps = 14/346 (4%)

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           D   +RRDEVI Y+  KYG E  + I TF +L AK ++RDVGR L +  +++D++ K + 
Sbjct: 1   DIQDNRRDEVINYIVEKYGIENCSLITTFQTLGAKNSIRDVGRVLNINLAEIDKISKTLA 60

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
           +  +     +    +SRFR A    P   +LLE+S+ +EGL R    H AGI+I D P+ 
Sbjct: 61  DGQSIE---EGYLKNSRFRIAIEKYP---KLLELSKNIEGLPRQKGVHPAGIIISDTPII 114

Query: 541 QLVPMYRDVRSDLPVTQFNM--KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            ++P+         + Q ++  ++IEK GLIK DFLGLKTLT++Q     L        +
Sbjct: 115 NIMPISVSTEK---INQVDLTLEYIEKFGLIKIDFLGLKTLTIIQNIEKDLNYEDRFDYI 171

Query: 599 SLIPFD---DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
           +    +   D +T   L +  + GIFQ++S GM++ ++ +  D   D+ A++SL+RPGP+
Sbjct: 172 ASTTPNIYQDSQTLKCLNSTLSQGIFQIDSPGMKKTIKNVGIDTFNDLFAIISLFRPGPM 231

Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
           + I  Y + K   + I  IHP+ D +++ET G+I+YQEQ+MQIAQ L G S  +AD+LRR
Sbjct: 232 EYISEYASNKKNPDNIELIHPVYDEIVRETFGIIVYQEQIMQIAQKLVGMSFGQADILRR 291

Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            + KK   +M++ K  F   A KN I   I+  I+  + KFA YGF
Sbjct: 292 TISKKDLIKMEQYKTFFNQLAQKNNIDPEISETIYRKIEKFASYGF 337


>gi|159026962|emb|CAO86680.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 445

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 81/287 (28%), Positives = 146/287 (50%), Gaps = 10/287 (3%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   DN +K++K+ ++ ++ NI 
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDNQDKVEKYRENCQKMNID 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRVD 873
            + PP +N     F     +I + L+A++ +G      I++A       F SL DFC RVD
Sbjct: 93   VEPPDINRSQKHFTPIGRKILFGLSAVRNLGENAIEAILKAREATGGKFTSLGDFCERVD 152

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             + +N+R LE+L++ GA D    +R QL++ L+ +  +AQ   K + +   NIF    G+
Sbjct: 153  LRVINKRALETLIYCGAFDKIQPNRHQLIEDLELVVAWAQKRTKEKESGQMNIFDMLGGS 212

Query: 934  --------FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                    F    +       +   + + E+  LGFY S HPL   +   + +      +
Sbjct: 213  TENKQESEFEQSPSATPVEDFSLQEKLKLEKEHLGFYVSEHPLKALQRAAQVLSPINLAD 272

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +    ++ + ++  T+KG+ + ++T  + + + EA  F
Sbjct: 273  LEEHKTRKKVSAIVLLNAVKKIMTKKGTPMAFLTLEDASGQSEAVVF 319


>gi|298492691|ref|YP_003722868.1| nucleic acid-binding OB-fold tRNA/helicase-type protein ['Nostoc
            azollae' 0708]
 gi|298234609|gb|ADI65745.1| nucleic acid binding OB-fold tRNA/helicase-type ['Nostoc azollae'
            0708]
          Length = 451

 Score =  290 bits (743), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 87/292 (29%), Positives = 143/292 (48%), Gaps = 14/292 (4%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T    + +K++K+  +     I+
Sbjct: 33   IASNCFNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTSNSGDTDKVQKYLNNCTSMGIE 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            I PP +N   +DF   + +I +  +A++ VG      I+EA A+   F SL DFC R+D 
Sbjct: 93   IDPPDINRSGLDFTPAEKKILFGFSAVRNVGQNAIACILEARAEGGEFKSLGDFCDRIDL 152

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            + +NRR LESL+  GA D    +R QL++ L+ +  +AQ   K R +   N+F    G+F
Sbjct: 153  RAVNRRTLESLIQCGAFDKIESNRQQLIRDLELVYDWAQSRAKERASGQGNLFDLMGGSF 212

Query: 935  SDKITL----------EKFSV---ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            ++   L           K  V        +   E+ +LGFY S HPL   K     +   
Sbjct: 213  ANNSNLQKSNNAFESAPKAEVTLDFPPQEKLRLEKELLGFYVSAHPLKDIKQSSSLLAPI 272

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +         +    M+ + ++  T+KG  +  +   +     EA  FP
Sbjct: 273  NLSQLGDQKDNTMLCAVVMLNNVKKVVTKKGDPMAILQIEDLTASSEAIVFP 324


>gi|166366494|ref|YP_001658767.1| DNA polymerase III subunit alpha [Microcystis aeruginosa NIES-843]
 gi|166088867|dbj|BAG03575.1| DNA polymerase III alpha subunit [Microcystis aeruginosa NIES-843]
          Length = 445

 Score =  290 bits (743), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 81/287 (28%), Positives = 146/287 (50%), Gaps = 10/287 (3%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   DN +K++K+ ++ ++ NI 
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDNQDKVEKYRENCQKMNID 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRVD 873
            + PP +N     F     +I + L+A++ +G      I++A       F SL DFC RVD
Sbjct: 93   VEPPDINRSQKHFTPIGRKILFGLSAVRNLGENAIEAILKAREATGGKFTSLGDFCERVD 152

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             + +N+R LE+L++ GA D    +R QL++ L+ +  +AQ   K + +   NIF    G+
Sbjct: 153  LRVINKRALETLIYCGAFDKIQPNRHQLIEDLELVVAWAQKRTKEKESGQMNIFDMLGGS 212

Query: 934  --------FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                    F    +       +   + + E+  LGFY S HPL   +   + +      +
Sbjct: 213  TENKQESEFEQSPSATAVEDFSLQEKLKLEKEHLGFYVSEHPLKALQRAAQVLSPINLAD 272

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +    ++ + ++  T+KG+ + ++T  + + + EA  F
Sbjct: 273  LEEHKTRKKVSAIVLLNAVKKIMTKKGTPMAFLTLEDASGQSEAVIF 319


>gi|282899107|ref|ZP_06307088.1| hypothetical protein CRC_00420 [Cylindrospermopsis raciborskii
            CS-505]
 gi|281196023|gb|EFA70939.1| hypothetical protein CRC_00420 [Cylindrospermopsis raciborskii
            CS-505]
          Length = 448

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 140/289 (48%), Gaps = 12/289 (4%)

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T    + +K++K+  +     I+I
Sbjct: 34   ASNCFNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTANSGDTDKVQKYLNNCNNMGIEI 93

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSK 875
             PP +N   +DF   D +I +  +A++ VG      I++A      F SL DFC R+D +
Sbjct: 94   DPPDINRSGLDFTPADQKILFGFSAVRNVGQNAIAGILDARQQGGEFTSLGDFCDRIDLR 153

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE----- 930
             +NRR LESL+  GA D    +R QL++ L+ + ++AQ   K+R     N+F        
Sbjct: 154  VVNRRTLESLIQCGAFDKIESNRHQLVKDLELVYEWAQSRAKDRAIGQGNLFDFMGTGIS 213

Query: 931  ------KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                  K  F      +  S      +   E+ +LGFY S HPL   K     +      
Sbjct: 214  NVSTSSKNGFKSIPKADPVSDYPPQEKLRMEKELLGFYVSAHPLKNIKQSSSLLAPINLV 273

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +       N + +  M+   ++  T+KG ++  +   +     EA  FP
Sbjct: 274  DLGEQKDKNLVCVVVMLNHVKKVMTKKGEQMAILQIEDLTTTSEAVVFP 322


>gi|170078979|ref|YP_001735617.1| DNA polymerase III subunit alpha [Synechococcus sp. PCC 7002]
 gi|169886648|gb|ACB00362.1| DNA polymerase III alpha subunit [Synechococcus sp. PCC 7002]
          Length = 446

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 83/286 (29%), Positives = 145/286 (50%), Gaps = 12/286 (4%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A ++    N +K++K+ ++A +  I 
Sbjct: 33   IAANCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLSASSGNKDKVRKYRENAERMGIL 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            ++PP +N   +DFK     I + L+A++ +G      I+ A    PF SL D CSR+D +
Sbjct: 93   VLPPDINESDLDFKPVGQGIRFGLSAVQNLGENAINAILAAREAGPFLSLSDLCSRLDLR 152

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---AHEKG 932
             +NRR LE+L+  G LD    +R  +L+ LD +  +AQ   K + +   N+F        
Sbjct: 153  VVNRRALETLITCGGLDSLHDNRQAMLKGLDLMMDWAQLKAKEKASGQTNLFESLGDTAA 212

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK----PILRKMGIKGYEESVA 988
             F +   L K +      +   E+ +LGFY S HPL+  +    PIL  + +      + 
Sbjct: 213  AFDEAPVLPKVADLTLEEKLRQEKELLGFYVSEHPLEKLRSTISPILSPISLTAIANHI- 271

Query: 989  TIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANFFP 1033
                  +   A++   ++  T+     + ++   + + + E   FP
Sbjct: 272  ---NKKVSAVAILTDMRKIFTKANNEPMAFIQLEDISGQVEGIVFP 314


>gi|257061525|ref|YP_003139413.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 8802]
 gi|256591691|gb|ACV02578.1| nucleic acid binding OB-fold tRNA/helicase-type [Cyanothece sp. PCC
            8802]
          Length = 448

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 143/289 (49%), Gaps = 11/289 (3%)

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
              A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   DN +K++K+ ++ ++  I
Sbjct: 32   SIASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDNQDKVEKYRENCQKMGI 91

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873
            ++ PP +N     F      I + L+A+K +G     +I++A  D   F SL DFCSRVD
Sbjct: 92   EVEPPDINRSQKHFTPIGEHILFGLSAVKNLGEGAIDNILKAREDEGDFTSLADFCSRVD 151

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------ 927
             + +N+R LE+L++ GA D    +R QL+  ++ +  +AQ   K + +   N+F      
Sbjct: 152  LRVVNKRALETLIYCGAFDKVQNNRKQLINDIELVTAWAQKRAKEKESGQLNLFDLVGNS 211

Query: 928  ----AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                      F    +    +      R + E+  LGFY S HPL   K     +     
Sbjct: 212  TSQNGASNSDFEQAPSSPAVADFPLPERLKLEKEHLGFYVSEHPLKSIKKAAAILSPINL 271

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             E         I    MV + ++  T++G  + ++T  + + + EA  F
Sbjct: 272  SELEEQKSKQKISAVVMVNTIKKIVTKQGKNMAFLTLEDISGQLEAVVF 320


>gi|218248458|ref|YP_002373829.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 8801]
 gi|218168936|gb|ACK67673.1| DNA-directed DNA polymerase [Cyanothece sp. PCC 8801]
          Length = 448

 Score =  289 bits (740), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 143/289 (49%), Gaps = 11/289 (3%)

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
              A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   DN +K++K+ ++ ++  I
Sbjct: 32   SIASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDNQDKVEKYRENCQKMGI 91

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873
            ++ PP +N     F      I + L+A+K +G     +I++A  D   F SL DFCSRVD
Sbjct: 92   EVEPPDINRSQKHFTPVGEHILFGLSAVKNLGEGAIDNILKAREDEGNFTSLADFCSRVD 151

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------ 927
             + +N+R LE+L++ GA D    +R QL+  ++ +  +AQ   K + +   N+F      
Sbjct: 152  LRVVNKRALETLIYCGAFDKVQNNRKQLINDIELVTAWAQKRAKEKESGQLNLFDLVGNS 211

Query: 928  ----AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                      F    +    +      R + E+  LGFY S HPL   K     +     
Sbjct: 212  TSQNGASNSDFEQAPSSPAVADFPLPERLKLEKEHLGFYVSEHPLKSIKKAAAILSPINL 271

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             E         I    MV + ++  T++G  + ++T  + + + EA  F
Sbjct: 272  SELEEQKSKQKISAVVMVNTIKKIVTKQGKNMAFLTLEDISGQLEAVVF 320


>gi|186685733|ref|YP_001868929.1| DNA polymerase III subunit alpha [Nostoc punctiforme PCC 73102]
 gi|186468185|gb|ACC83986.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Nostoc punctiforme
            PCC 73102]
          Length = 450

 Score =  288 bits (737), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 139/291 (47%), Gaps = 13/291 (4%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T    + +K++++  +     I 
Sbjct: 33   IASNCFNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTANSGDTDKVQRYITNCTNMGIS 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            I PP +N   VDF     +I +  +A++ VG      I+EA  +   F SL DFC RVD 
Sbjct: 93   IDPPDINRSGVDFTPTLGKILFGFSAVRNVGQNAIACILEARNETGEFKSLADFCDRVDL 152

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-- 932
            + +NRR LESL++ GA D    +R QL+   + +  +AQ   K+R +   N+F       
Sbjct: 153  RAVNRRTLESLIYCGAFDKIESNRQQLINDSELVYDWAQSRAKDRASGQGNLFDLLGDGF 212

Query: 933  ----------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
                       F      +  +      + + E+ +LGFY S HPL   + I   +    
Sbjct: 213  SSTQNKRVNNAFETAPKSKPVTDLPPQKKLQMEKELLGFYVSDHPLKSLRQIAPLLTPIN 272

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +         +    M+ + ++  T+KG ++  +   +   + EA  FP
Sbjct: 273  LSQLGEQREDTRLCAVVMLNNVKKVVTKKGDQMAILQIEDLTTQSEAVVFP 323


>gi|67920557|ref|ZP_00514077.1| Protein splicing (intein) site [Crocosphaera watsonii WH 8501]
 gi|67858041|gb|EAM53280.1| Protein splicing (intein) site [Crocosphaera watsonii WH 8501]
          Length = 450

 Score =  287 bits (735), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 84/291 (28%), Positives = 146/291 (50%), Gaps = 12/291 (4%)

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
              A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   D+ +K++K+ ++ ++  I
Sbjct: 32   SIASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDSQDKVEKYRENCQKMGI 91

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS--ADKPFDSLEDFCSRV 872
             ++PP +N    DF   D +I + L+A++ +G     +I++A    +  F SL DFC RV
Sbjct: 92   DVLPPDINLSKKDFTPIDKQILFGLSAVRNLGEGAIENILKAREEEEGGFKSLADFCCRV 151

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---- 928
            D + +N+R LE+L++AGA D    +R QL+  L+ +  +AQ   K + +   N+F     
Sbjct: 152  DLRSVNKRALETLIYAGAFDALNANRQQLINDLELVIPWAQKRTKEKESGQLNLFDLVSD 211

Query: 929  ------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
                    K  F    +       +   +   E+  LGFY S HPL   K   + +    
Sbjct: 212  NNGETTESKNDFQQAPSTSPVEAYSLQDKLRLEKEHLGFYVSEHPLTALKKAAKLLSPIN 271

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              E     +   +    MV   +Q  T+KG  + ++   + + + +   FP
Sbjct: 272  LNEIAEQKKNTKVSAVIMVNEVKQYTTKKGDPMAFLVLEDGSAQVKGVCFP 322


>gi|313798987|gb|ADR82149.1| DNA polymerase III alpha subunit [Mycoplasma anatis]
          Length = 334

 Score =  287 bits (735), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 130/343 (37%), Positives = 197/343 (57%), Gaps = 14/343 (4%)

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
             +RR+EVI Y+ +KYG E  A I TF +L AK ++RDVGR L +  S++D++ K + + 
Sbjct: 1   QDNRREEVINYIVDKYGIENCALITTFQTLGAKNSIRDVGRVLNINLSEIDKISKTLADG 60

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            +     +   ++SRFR A    P   +LLE+S+ +EGL R    H AGI+I D P+  +
Sbjct: 61  QSIE---EGYQNNSRFRIAIEKYP---KLLELSKNIEGLPRQKGVHPAGIIISDTPIIDI 114

Query: 543 VPMYRDVRSDLPVTQFNM--KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
           +P+         + Q ++   +IEK GLIK DFLGLKTLT++Q     L        ++ 
Sbjct: 115 MPISFSTEK---INQVDLTLDYIEKFGLIKIDFLGLKTLTIIQNIEKDLNYENCFDYIAS 171

Query: 601 IPFD---DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
              +   D +T   L +  + GIFQ++S GM++ +  +  D   D+ A++SL+RPGP++ 
Sbjct: 172 TTPNIYSDQKTLMCLNSTLSQGIFQIDSPGMKRTISNVGIDTFNDLFAIISLFRPGPMEY 231

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           I  Y   K    KI  IHP+ D +++ET G+I+YQEQ+MQIAQ L G S  +AD+LRR +
Sbjct: 232 IKEYALNKKNPNKIELIHPIYDEIVRETFGIIVYQEQIMQIAQKLVGMSFGQADILRRTI 291

Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            KK   +M++ K  F   A  N I    +  I+  + KFA YG
Sbjct: 292 SKKDLLKMEQYKTFFNDLAKNNNIDPHTSETIYNKIEKFASYG 334


>gi|307152451|ref|YP_003887835.1| nucleic acid-binding OB-fold tRNA/helicase-type [Cyanothece sp. PCC
            7822]
 gi|306982679|gb|ADN14560.1| nucleic acid binding OB-fold tRNA/helicase-type [Cyanothece sp. PCC
            7822]
          Length = 452

 Score =  287 bits (735), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 85/290 (29%), Positives = 147/290 (50%), Gaps = 12/290 (4%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   D+ +K++K+ ++ ++  I 
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDSQDKVEKYRENCKKMGID 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVD 873
            + PP +N    DF     +I + L+A++ +G     +I++A  +    F+SL DFC RVD
Sbjct: 93   VEPPDINRSQKDFTPVGEKILFGLSAVRNLGENAIENILKAREEAKGKFESLADFCLRVD 152

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             + +NRR LE+L++ GA D    +R QL+Q LD +  +AQ   K + +   ++F    G 
Sbjct: 153  LRVVNRRALETLIYCGAFDNINNNRNQLIQYLDIVIPWAQKRTKEKESGQLSLFDSLGGL 212

Query: 934  FSDK----------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
              D+           +L      +   + + E+  LGFY S HPL       + +     
Sbjct: 213  TVDEENSESKFDLVPSLPSVEPFSLDQKLKLEKEHLGFYVSEHPLQSIVEAAKFLSPINL 272

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             E         I    M+ S ++  T++G  + +V   + + + E   FP
Sbjct: 273  NELENQSTRKMISAVVMINSVKKITTKEGKPMAFVGLEDISGQVEGIVFP 322


>gi|313798997|gb|ADR82150.1| DNA polymerase III alpha subunit [Mycoplasma anatis]
          Length = 334

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 128/343 (37%), Positives = 196/343 (57%), Gaps = 14/343 (4%)

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
             +RR+EVI Y+ +KYG E  A I TF +L AK ++RDVGR L +  S++D++ K + + 
Sbjct: 1   QDNRREEVINYIVDKYGIENCALITTFQTLGAKNSIRDVGRVLNINLSEIDKISKTLADG 60

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            +     +   ++SRFR      P   +LLE+S+ +EGL R    H AGI+I D P+  +
Sbjct: 61  QSIE---EGYQNNSRFRITIEKYP---KLLELSKNIEGLPRQKGVHPAGIIISDTPIIDI 114

Query: 543 VPMYRDVRSDLPVTQFNM--KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
           +P+         + Q ++   ++EK GLIK DFLGLKTLT++Q     L        ++ 
Sbjct: 115 MPISFSTEK---INQVDLTLDYVEKFGLIKIDFLGLKTLTIIQNIEKDLNYENCFDYIAS 171

Query: 601 IPFD---DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
              +   D +T   L +  + GIFQ++S GM++ +  +  D   D+ A++SL+RPGP++ 
Sbjct: 172 TTPNIYSDQKTLMCLNSTLSQGIFQIDSPGMKRTISNVGIDTFNDLFAIISLFRPGPMEY 231

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           I  Y   K    KI  IHP+ D +++ET G+I+YQEQ+MQIAQ L G S  +AD+LRR +
Sbjct: 232 IKEYALNKKNPNKIELIHPIYDEIVRETFGIIVYQEQIMQIAQKLVGMSFGQADILRRTI 291

Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            KK   +M++ K  F   A  N I    +  I+  + KFA YG
Sbjct: 292 SKKDLLKMEQYKTFFNDLAKNNNIDPHTSETIYNKIEKFASYG 334


>gi|16329834|ref|NP_440562.1| DNA polymerase III subunit alpha [Synechocystis sp. PCC 6803]
 gi|1652319|dbj|BAA17242.1| DNA polymerase III alpha subunit [Synechocystis sp. PCC 6803]
          Length = 458

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 86/295 (29%), Positives = 147/295 (49%), Gaps = 16/295 (5%)

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
              A   FNKSH+ AYA ++YQTA++K +YPVE++AA +T   D+ EK++K+ ++ ++  I
Sbjct: 32   AIAANCFNKSHSTAYAYVTYQTAYLKANYPVEYMAALLTASSDSQEKVEKYRENCQKMGI 91

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSR 871
             + PP +N     F      I + L+A++ +G      I+ A     +K F SL DFC++
Sbjct: 92   TVEPPDINRSQRHFTPLGEAILFGLSAVRNLGEGAIEQIITARDNSEEKRFKSLADFCTQ 151

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--- 928
            VD + +NRR +E+L+ AGA D    +R QLL  L+ +  +AQ   K +     NIF    
Sbjct: 152  VDLRVVNRRAIETLIMAGAFDGVQSNRNQLLHDLELVIAWAQKRAKEKETGQLNIFDSLT 211

Query: 929  ---------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                          F  + +    +  +   + + E+  LGFY S HPL   +   R + 
Sbjct: 212  AGESIKAKEAANNGFEQEPSAPPVAEFSLQEKLQLEKEHLGFYVSEHPLKSVQRSARLLS 271

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
                 +         +   A++V+ ++  T+K G  + ++T  + + + EA  FP
Sbjct: 272  PINLVDLDQYKVRQKVSAVAILVAVKKIITKKNGQPMAFLTLEDMSGQSEAVVFP 326


>gi|266625640|ref|ZP_06118575.1| DNA polymerase III, alpha chain [Clostridium hathewayi DSM 13479]
 gi|288862456|gb|EFC94754.1| DNA polymerase III, alpha chain [Clostridium hathewayi DSM 13479]
          Length = 567

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 112/610 (18%), Positives = 200/610 (32%), Gaps = 142/610 (23%)

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------ 399
           +   VG  RGS   S  AY   IT+++ L                               
Sbjct: 1   DGYLVG-SRGSVGSSFVAYMSGITEVNSLSPHYYCASCHYYDFDSEEVKKYTGMAGCDMP 59

Query: 400 ---------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                          F + FE FL       PD D++F  + + +   Y +  +G  +  
Sbjct: 60  DKTCPVCGHPLTKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHDYTEVIFGKGQTF 119

Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
           +  T G+L  K A   V    +  +    R C                            
Sbjct: 120 RAGTIGTLADKTAYGYVKNYYE-EHGVHKRNC---------------------------- 150

Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRSDLP---VTQFN 559
                 +  I Q   G+ R    H  GI++      +    P+ R           T F+
Sbjct: 151 -----EINRIVQGCVGVRRTTGQHPGGIIVLPHGEEIYSFTPVQRPANDMTTMTVTTHFD 205

Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
              I+   L+K D LG    T+++   D +    V      IP D  E   L      LG
Sbjct: 206 YHSIDH-NLLKLDILGHDDPTMIRMLQDLIGFDPV----KDIPLDSREVMSLFQDTSALG 260

Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLI 678
           I   +  G +    G+     +  + ++   +P    ++V      +G +  + +   LI
Sbjct: 261 ITPEDIGGCKLGALGVPEFGTDFAMQMLIDTQPKYFSDLVRIAGLAHGTDVWLGNAQTLI 320

Query: 679 DPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
                  Q  I  ++ +M     +    G S +  + +R+  G K + E +         
Sbjct: 321 QEGKATIQTAICTRDDIMIYLISMGLEEGLSFTIMESVRKGKGLKPEWEEE--------- 371

Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              +G+        +    K   Y F K+HAAAY +++++ A+ K  YP+ + AA  ++ 
Sbjct: 372 MISHGVPD-----WYIWSCKKIKYMFPKAHAAAYVMMAWRIAYCKVFYPLAYYAAFFSIR 426

Query: 796 MDNV---------EKIKKF------------------------CQDARQFNIQIMPPSVN 822
            +           +K++ +                         Q+         P  + 
Sbjct: 427 ANGFSYELMCQGRDKLEYYLADYKKRMDTLSKKEQDTLRDMRIVQEMYARGYDFTPIDIY 486

Query: 823 -TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                 F++   ++  SL++I G+G   A  +++A  D  F S EDF +R    K    +
Sbjct: 487 QAKARHFQIIGGKLMPSLSSIDGLGEKAADAVVDAVKDGKFLSKEDFRNRTKVSKTVCDL 546

Query: 882 LESLVFAGAL 891
           +  L   G L
Sbjct: 547 MADLGLLGEL 556


>gi|77414679|ref|ZP_00790814.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 515]
 gi|77159276|gb|EAO70452.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 515]
          Length = 579

 Score =  284 bits (728), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 109/618 (17%), Positives = 209/618 (33%), Gaps = 139/618 (22%)

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF---------------------- 400
            +Q + +    VG  RGS   S  A  + IT+++P+                        
Sbjct: 2   LVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSCGSGY 60

Query: 401 -------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
                               + FE FL  D   +PD D++F  D +      V++ +G E
Sbjct: 61  DLPNKNCPKCGTLYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEE 120

Query: 442 RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
              +  T G++  K A   V +  +  Y++                              
Sbjct: 121 YAFRAGTVGTVAEKTAFGFV-KGYERDYNK------------------------------ 149

Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVT 556
              D  V+RL   +    G+ R    H  GIV+      +    P+             T
Sbjct: 150 FYNDAEVERL---ATGAAGVKRSTGQHPGGIVVIPNYMDVYDFTPVQYPADDMTAAWQTT 206

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
            FN   I++  ++K D LG    T+++K  D        +D S I  DD +   L +   
Sbjct: 207 HFNFHDIDE-NVLKLDILGHDDPTMIRKLQDL-----SGIDPSNILPDDPDVMKLFSGTE 260

Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIH 675
            LG+ + E  G    + G+       +  +V+   P     ++  +   +G +  + +  
Sbjct: 261 VLGVTE-EQIGTPTGMLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHGTDVWLGNAQ 319

Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERF 732
            LI   +     VI  ++ +M            + +  + +R+ +  KI E    ++  +
Sbjct: 320 DLIKEGIATLSTVIGCRDDIMVYLMHAGLQPKMAFTIMERVRKGLWLKISE---DERNGY 376

Query: 733 ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
           I     N +      +  ++      Y F K+HAAAY +++ + A+ K HYP+ +  A  
Sbjct: 377 IQAMRDNNVPDWYIESCGKI-----KYMFPKAHAAAYVLMALRVAYFKVHYPIFYYCAYF 431

Query: 793 TLE--------------------MDNVEKIK---------------KFCQDARQFNIQIM 817
           ++                      D  EK +               +   +  +   +  
Sbjct: 432 SIRAKAFELRTMSAGLDAVKARMKDITEKRQRNEATNVENDLFTTLELVNEMLERGFKFG 491

Query: 818 PPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
                 +   DF + ++ +     A++G+G   A+ I+ A  D  F S  +   R     
Sbjct: 492 KLDLYRSHATDFIIEEDTLIPPFVAMEGLGENVAKQIVRAREDGEFLSKTELRKR---GG 548

Query: 877 LNRRVLESLVFAGALDCF 894
           ++  ++E     G L   
Sbjct: 549 VSSTLVEKFDEMGILGNL 566


>gi|23321267|gb|AAN23128.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 316

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 111/332 (33%), Positives = 169/332 (50%), Gaps = 21/332 (6%)

Query: 37  AADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTV 96
           AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     +
Sbjct: 1   AAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDEL 50

Query: 97  PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
             + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + 
Sbjct: 51  TKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVG 109

Query: 157 RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATN 215
           RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN
Sbjct: 110 RALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATN 169

Query: 216 NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENT 274
             +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+
Sbjct: 170 EVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANS 229

Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKG 331
           VEIA+RC+  +++    LP F            E+ L  K+  GLE RL         + 
Sbjct: 230 VEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRA 284

Query: 332 YHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               +Y +RL  EL+VI +M F GYFLIV +F
Sbjct: 285 KRRPEYDERLQVELDVINQMGFPGYFLIVMEF 316


>gi|172039636|ref|YP_001806137.1| DNA polymerase III subunit alpha [Cyanothece sp. ATCC 51142]
 gi|171701090|gb|ACB54071.1| DNA polymerase III alpha subunit, C-terminal intein/extein
            [Cyanothece sp. ATCC 51142]
          Length = 452

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 86/290 (29%), Positives = 148/290 (51%), Gaps = 12/290 (4%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   DN +K++K+ ++ ++  I 
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDNQDKVEKYRENCQKMGID 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS--ADKPFDSLEDFCSRVD 873
            ++PP +N    DF     +I +  +A++ +G     +I++A   A+  F+SL DFC RVD
Sbjct: 93   VLPPDINRSQKDFTPVGKQILFGFSAVRNLGEGAIDNILKAREEAEGQFESLADFCCRVD 152

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG- 932
             + +N+R LE+L++AGA D    +R QL+  L+ +  +AQ   K + +   NIF    G 
Sbjct: 153  LRSVNKRALETLIYAGAFDAIYPNRKQLINDLELVVPWAQKRTKEKESGQLNIFDLMSGN 212

Query: 933  ---------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                      F    +       +   + + E+  LGFY S HPL   K   + +     
Sbjct: 213  TTESTEANTDFKQAPSASSVEDYSLQDKLKLEKEHLGFYVSEHPLTAVKKAAKILSPINL 272

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             E         +    MV   +Q  T+KG ++ ++   + + + +A  FP
Sbjct: 273  NEMGEQKAKTKVSAVIMVNEVKQYTTKKGDQMAFLVLEDGSAQVDAVCFP 322


>gi|260588428|ref|ZP_05854341.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
 gi|260541302|gb|EEX21871.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
          Length = 676

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 127/677 (18%), Positives = 261/677 (38%), Gaps = 72/677 (10%)

Query: 13  HLQVHSSYS---LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---KACAAG 66
           HL VHS YS   L++    ++ ++ K        IAITD  ++   ++  Q   K  + G
Sbjct: 3   HLHVHSDYSNIRLIDSINKVSKLIQKAVNLNNSGIAITDHESVSGHVQALQIVEKGKSEG 62

Query: 67  IQP----IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY-- 120
             P    +I       +    ++ +  K+        +LL     G+++L  L S  +  
Sbjct: 63  SIPEDFKLILGNEIYLVNSLEEVRDNYKSGITKFWHFILLAKDEIGHKQLRILSSLAWDN 122

Query: 121 --LLDQGKQSVRI--CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
                + +++  +   L  + +     LI  T    G           +   + +     
Sbjct: 123 SFKTGKMERTPTLKSDLEKIVKENPGHLIASTACLGGECSHWILNKDVEKFNEFVQYCYD 182

Query: 177 LFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           LFG+  Y  LQ +   ++      ++ ++   ++P + T ++ ++++ED   H+  +   
Sbjct: 183 LFGEDFYFELQPNNSEEQVLVNKTLISISEQLDIPFIVTCDAHYVNKEDRVFHEAYLNSH 242

Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHA 289
                 +++        Y+ N +E+            + +A+ NT  IA + S     H+
Sbjct: 243 E----EEREVGDFYATTYMMNVTEIHEYLDWQIGEENVNKAIRNTEVIADKVSNYTLAHS 298

Query: 290 PILPRFIEKECDDIQKEEE-----NELRNKAV------AGLEVRLAQGAIAKGYHA---- 334
            I+P     E  +    ++       +R  A         L   ++QG   KGY+     
Sbjct: 299 TIVPEANIPEYQEEHYFKDFYDTHEYIRKFAYSDNKYDRYLLHLISQGFKTKGYYVGIKD 358

Query: 335 ---QDYRQRLDFELNVI------ARMKFSGYFLIVADFIQWAKKNNI-PVGPGRGSGAGS 384
              +    R++ EL+ +       +   S Y++   + I+         VG  RGS  G 
Sbjct: 359 EELKILIDRIEIELSEMWKVTEKIKNSISSYYISTLELIEIMWNEGDSLVGVARGSVTGM 418

Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            T Y + +  ++P+++ L   R ++ +R  + D D+D  ++RR +++  ++ + G  RV 
Sbjct: 419 YTMYLIGLIQMNPIQWGLPHWRHISHERPELADIDLDSQRNRRKQIVNAIKKRKGERRVL 478

Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA--IADDSRFR--- 499
              TF +  +K+A+    R L +       +  LIP       S+      ++   R   
Sbjct: 479 NSCTFKTEGSKSAVITAARGLGVDNDIAQHIANLIPITRGFTWSIHDCLYGNEEEERKPV 538

Query: 500 -EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
            E       +  LLE +  +EGL    S HA+ + + +    +     +       +TQF
Sbjct: 539 IEFANEIKKIPNLLETALNIEGLISGRSIHASAVYLFNDDFIEHNARMKAPN-GTYITQF 597

Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----------RGVKVDLSLIPFDDHET 608
           NM   +  G +K D L + +L +++  ++ L +          R            D+ET
Sbjct: 598 NMHDSDWCGGLKQDMLTISSLDIVRHCMELLIEAGHMQWQGTLRDTYNKYLHPDVLDYET 657

Query: 609 ---YHLLTTKGTLGIFQ 622
              +  +     + +FQ
Sbjct: 658 KEMWDWIAENKVMDLFQ 674


>gi|145628378|ref|ZP_01784179.1| DNA polymerase III subunit alpha [Haemophilus influenzae 22.1-21]
 gi|144980153|gb|EDJ89812.1| DNA polymerase III subunit alpha [Haemophilus influenzae 22.1-21]
          Length = 309

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 96/322 (29%), Positives = 161/322 (50%), Gaps = 19/322 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1   MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +G++PIIG            +  +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61  SGMKPIIGA----------DVKVKSTLCGDEYFYLTLLAKNNEGYKNITLLLSKAYQRGY 110

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 I   WL E   EG+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 111 N-DLPYIDQDWLIE-HREGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168

Query: 185 NLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            L R    D  R  Q  ++LA +H LPLVATN+ +FL  +D+EAH++ +A+     +   
Sbjct: 169 ALTRTGKPDEERYIQAALKLAKSHGLPLVATNDVMFLKSDDFEAHEIRVAIHDGYTLDDP 228

Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            RP   T   Y ++  EM  +F+D+P ALENT+ IA+RCS  L++    LP+F   +   
Sbjct: 229 KRPKYYTSQQYFRSEDEMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL-- 286

Query: 303 IQKEEENELRNKAVAGLEVRLA 324
                E+ L  K+  GLE RLA
Sbjct: 287 ---STEDFLVQKSKEGLEERLA 305


>gi|30171791|gb|AAP20774.1| DNA polymerase III alpha subunit [Peanut witches'-broom phytoplasma]
          Length = 1492

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 143/932 (15%), Positives = 303/932 (32%), Gaps = 187/932 (20%)

Query: 90   KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
               F     + ++V   +GY  L  L+S     D   +  R+  S  ++   EGL++ +G
Sbjct: 593  DIKFERPYHVNIIVKNKKGYNNLFHLISDALTRD-FIKKPRLLKSNFEKY-REGLLIGSG 650

Query: 150  GSSGPIDRAFF-FNSSQVAEKRL----------LTFKKLFGD-----RLYVNLQRHRGYD 193
                 +       N+  +A+               ++ +  D        ++        
Sbjct: 651  CFDSNVFNIALYKNNYDLAKAISYYDYIEVQPPQAYRHIIYDLNGDSDFDIDNSYGLSII 710

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA---VAHSTVVSQKDRPRVTP 250
            +    ++++ A      ++AT +  +L   +    +V +    +        K   +  P
Sbjct: 711  KDTIIKIIKEAQRQNKIIIATGDVHYLYPYEKILREVYINAKLIGGGLHRLSKYPSKFLP 770

Query: 251  DHYLKNRSEMVSIFSDLPE-------ALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            D+Y     EM+  F+ + +        + NT  + ++     +        F   +   +
Sbjct: 771  DNYFLTTQEMLDSFNFISDEKLKKDLVINNTHLLNQQIE---KFKFFSDQLFNIPDDMFV 827

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI------ARMKFSGYF 357
            +  + + +R++ +  +  ++    +         + R++ EL+VI              +
Sbjct: 828  KNLKISSIRSEILNIVNEKILN--LYGKLLHPIIKYRIEQELSVIAPKDNLENNNIVAIY 885

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL--------------- 402
             +    ++ + ++  PVG  RGS   S+ A  L IT+I+PL                   
Sbjct: 886  YLSYLLVKKSTEDGYPVG-SRGSVGASLIANILGITEINPLPPHYRCVVCKYTIMKTSIT 944

Query: 403  --LFERFLN---------------------PDRMSMPDFDIDFC-----QDRRDEVIRYV 434
              L   + N                          +P     FC     +D +D      
Sbjct: 945  KTLTSEYQNYLQSWPFVIDIQQYQKKFKTIFSGYDLPKESCPFCNQPFVKDGQDIPFETF 1004

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGR-----ALQMPYSQVDRLCKLIPNDPAHPVSL 489
                G+++   I    S   +  + +  R             +  + K           +
Sbjct: 1005 LGFDGNKK-PDIDLNFSGDYQNQIHNYLRELLGENCVFRAGTIQTVAKQ-----NAYGYI 1058

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY- 546
            ++  ++ +       +    R++     +EG+ R    H  GIVI      +  + P+  
Sbjct: 1059 KSFMEEKQI--IIRDNERDRRVI----MIEGVKRSTGQHPGGIVIIPSGLSIYDVTPIQF 1112

Query: 547  --RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDLSLI 601
               DV S+   T F+   +EK  L K D LG    TL++  +D + +            I
Sbjct: 1113 PANDVSSEWKTTHFDYHALEK-NLFKLDILGHDDPTLIKFLMDDVLKNPSEFPFSRFQDI 1171

Query: 602  PFDDHETYHLLTTKG------------TLGIFQLESSGMRQALEGM----QPDCIEDIIA 645
            P DD+  Y +   K             +  I +  +  +R  L+ +    +      ++ 
Sbjct: 1172 PVDDNLVYEIFANKEDEIFANKEECKTSQAIPEFGTPFVRNMLKEIYLKEKKFNFSTLVK 1231

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ---LL 702
            +  L     + +     N ++  E   SI  LI             ++ ++       L 
Sbjct: 1232 VSGLSHGTGVWSG----NAQDQLEDNKSIFDLI-----------TCRDDILNYLISKGLK 1276

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
               S    +++R+              +R    A    + +    + +    +   Y F 
Sbjct: 1277 KLISFEIMELVRKGKQ---------NNDRQKWSALSKIMREHNVNDWYIESLQKIQYLFP 1327

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFC------- 806
            K HAAAY +++ + AW K H P+ F     +  +            +KI +         
Sbjct: 1328 KPHAAAYVLMALRIAWFKVHAPLLFYKGYFSTRVSQFDYENMMLTTDKIAQILKKSNEKE 1387

Query: 807  ---------------QDARQFNIQIMPPSVNTPCVD---FKVGDNRIYYSLAAIKGVGTT 848
                           ++ +      +P  +N    +    +V  N +      I G+G  
Sbjct: 1388 MTSVQKKKLHTLKIAKEMKDRGYNFLPIDLNKSEANLFVMEVSSNSLIMPFITIDGLGQV 1447

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
             A +I++A  +K F   +DF  RV   K   +
Sbjct: 1448 GANNIVKARGEKLFTQ-QDFEKRVKLNKTILK 1478



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 35/77 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +   +H+  S L+   S  + ++        AI  TD + L++  E  +      I+ I+
Sbjct: 312 IEFHIHTKMSNLDAITSAKDYIELAEKWGHEAITFTDHDGLYAFPEIYKYIYNKNIKVIL 371

Query: 72  GCQLDIDMQDNLKMTNQ 88
           G +LD   +  + +TNQ
Sbjct: 372 GVELDFIEEKPIFITNQ 388


>gi|113475572|ref|YP_721633.1| DNA polymerase III subunit alpha [Trichodesmium erythraeum IMS101]
 gi|110166620|gb|ABG51160.1| DNA polymerase III, alpha subunit / Intein [Trichodesmium erythraeum
            IMS101]
          Length = 517

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 86/292 (29%), Positives = 145/292 (49%), Gaps = 14/292 (4%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +Y +E++AA +T    + +K++K+  + ++FNI+
Sbjct: 33   IASNCFNKSHSTAYAYVAYQTAYLKANYSLEYMAALLTANSGDQDKVQKYLANCQKFNIE 92

Query: 816  IMPPSVNTPCVDFKV--------GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLE 866
            + PP++N   VDF            ++I   L+A+K VG      I++A  +   F SL 
Sbjct: 93   VEPPNINQSEVDFTPLPKVATKEIKDKILVGLSAVKNVGEGAIEAILKARKEGGEFKSLA 152

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            D C RV+   LN R LESL+  GA D    +R QL++ L+ + K+AQ   K+R     ++
Sbjct: 153  DLCDRVNLNALNSRTLESLIKCGAFDKIEANRHQLIKDLEGVMKWAQDRNKDRNIGQLSL 212

Query: 927  F-----AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            F       +   F         S   +  + E E+ +LGFY S HPL   +   +     
Sbjct: 213  FDNHIPGAKNSAFDSVPKSSPVSDFPAKEKLEYEKEILGFYVSDHPLKYAQEQNQIQDAI 272

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +       + I+L  M+   +   T+KG  + ++   +   + +A  FP
Sbjct: 273  SIAQMKEKKSNSKIKLVVMLAGIKPHVTKKGDPMAFIQVEDMTGQLDAVVFP 324


>gi|32526639|dbj|BAC79179.1| putative DNA polymerase III, alpha chain [Streptomyces
           violaceoruber]
          Length = 382

 Score =  282 bits (721), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 95/376 (25%), Positives = 170/376 (45%), Gaps = 31/376 (8%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG- 66
           + SFVHL  H+ YS+L+GA  L  +  ++     PA+A++D  N+F A EF Q A   G 
Sbjct: 15  ADSFVHLHNHTEYSMLDGAQKLKPMFAEVDRQGMPAVAMSDHGNMFGAYEFQQVAKGFGS 74

Query: 67  IQPIIGCQLDIDMQDNLKMTN------------------QGKTPFPTVPSIVLLVSTAEG 108
           ++PIIG +  +                            +  +       + +  + A+G
Sbjct: 75  VKPIIGIEAYVAPSSRRNRRQEFWGPGGQRAVSDDGEGSKDVSGGGRFTHMTMWATGAQG 134

Query: 109 YQRLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            + L  + +      Q      R+ +  + E   EG++  TG  SG +      N    A
Sbjct: 135 LRNLFYMSTEASYTGQFPAGKPRMDMELIAE-HAEGVVATTGCPSGAVQTRLRLNQYDEA 193

Query: 168 EKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
            +    ++ +F  +  ++ L  H    +R     +++LA    LPL+ATN++ ++ E   
Sbjct: 194 RQVASAYQDIFGKENYFLELMDHGLSIERDVREGLLRLARELSLPLLATNDAHYIHESQA 253

Query: 226 EAHDVLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
           +AHD L+ +      + + R R +   +YLK  +EM ++F++LPEA +NT+ IA R    
Sbjct: 254 DAHDNLLCIGVGKNKADEKRFRFSGSGYYLKTAAEMRALFAELPEACDNTLLIAERVGSY 313

Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            +V   +       +  D  + +E+ LR + + GL +R             +  +R + E
Sbjct: 314 DEVFDNVDEMPQFPDVPD-GETQESWLRKEVLTGLAMRYGDPV------PTEVLERFETE 366

Query: 345 LNVIARMKFSGYFLIV 360
           ++VI  M FS YFL+V
Sbjct: 367 MSVIGPMGFSSYFLVV 382


>gi|307327094|ref|ZP_07606283.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
 gi|306887175|gb|EFN18172.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
          Length = 408

 Score =  282 bits (721), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 134/290 (46%), Gaps = 13/290 (4%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y +NK+HAAAYA++SY TA++K +YP E++AA +T   D+ +K   +  + R+  I+
Sbjct: 3    FAGYAYNKAHAAAYALVSYWTAYLKANYPAEYMAALLTSVRDDKDKSAVYLNECRRMGIK 62

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L A++ VG      I+    A   + S  D+  + +
Sbjct: 63   VLPPNVNESEANFTAQGDDVILFGLTAVRNVGQNVVEAIIRGRKAKGKYASFPDYLDKAE 122

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F    G 
Sbjct: 123  AVVCNKRTTESLIKAGAFDEMGHTRKGLTAHYEALIDNVVAVKRKEAEGQFDLFGGMAGD 182

Query: 934  FSD--------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
              D         +          +     E+ +LG Y S HPL   + +L         +
Sbjct: 183  GGDGEGPGFGLDVEFSDV-EWEKTYLLAQEREMLGLYVSDHPLLGLEQLLAGTADATVAQ 241

Query: 986  SVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 242  LTGGDFADGAIVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 291


>gi|126659690|ref|ZP_01730819.1| DNA polymerase III subunit alpha [Cyanothece sp. CCY0110]
 gi|126619035|gb|EAZ89775.1| DNA polymerase III subunit alpha [Cyanothece sp. CCY0110]
          Length = 452

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 86/290 (29%), Positives = 146/290 (50%), Gaps = 12/290 (4%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   DN +K++K+ ++ ++  I 
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDNQDKVEKYRENCQKMGID 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS--ADKPFDSLEDFCSRVD 873
            ++PP +N    DF     +I +  +A++ +G     +I++A   A+  F+SL DFC RVD
Sbjct: 93   VLPPDINRSQKDFTPVGKQILFGFSAVRNLGEGAIDNILKAREEAEGAFESLADFCCRVD 152

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG- 932
             + +N+R LE+LV+AGA D    +R QL+  L+ +  +AQ   K + +   NIF    G 
Sbjct: 153  LRSVNKRALETLVYAGAFDAINPNRKQLINDLELVVPWAQKRTKEKESGQLNIFDLMSGN 212

Query: 933  ---------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                      F    +       +   + + E+  LGFY S HPL   K   + +     
Sbjct: 213  NTETTESNSDFKHAPSASPVEDYSLQDKLKLEKEHLGFYVSEHPLTAVKKAAKILSPINL 272

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             E         +    M    +Q  T+KG ++ ++   + + + E   FP
Sbjct: 273  NEIAEQKAKTKVSAVIMANEVKQYTTKKGDQMAFLVLEDGSAQVEGVCFP 322


>gi|22299612|ref|NP_682859.1| DNA polymerase III subunit alpha [Thermosynechococcus elongatus BP-1]
 gi|22295796|dbj|BAC09621.1| DNA polymerase III alpha subunit [Thermosynechococcus elongatus BP-1]
          Length = 452

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 89/296 (30%), Positives = 148/296 (50%), Gaps = 18/296 (6%)

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
              A   FNKSH+ AY  ++YQTA++K ++PVE++AA +T    + +K++++        I
Sbjct: 31   AIAANCFNKSHSTAYGYVTYQTAFLKANFPVEYMAALLTANSGDQDKVQRYIATCLSMGI 90

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV- 872
            +++PP VN   +DF    N+I + L+A++ VG      I++A A+   F SL DFC RV 
Sbjct: 91   EVLPPDVNRSDIDFTPVGNKILFGLSAVRNVGQGVIEAILQARAEGGAFQSLADFCERVP 150

Query: 873  ----DSKKLNRRVLESLVFAGALDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
                DS+ LNRR LESL+  GA+D      +R QL+Q L  + ++A    K+R     N+
Sbjct: 151  RAGGDSRILNRRALESLIACGAMDSLHPQRNRNQLMQDLPLVLEWALARAKDRAVGQVNL 210

Query: 927  FA--------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL-DVYKPILRK 977
            F           KG++    +         + +   E+ +LGFY S HPL D+++P    
Sbjct: 211  FDMLAGDSSNESKGSYDPAPSAPPVDDLPDTEKLRQEKDLLGFYVSNHPLKDIHRPA-AM 269

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +                + + A++   +   T++G R+  V   +   + EA  FP
Sbjct: 270  IAPISLANLEQHTGQGVVSVIALLTGLKSITTKRGERMAIVQLEDLTGQAEAVVFP 325


>gi|119512954|ref|ZP_01632016.1| DNA polymerase III subunit alpha [Nodularia spumigena CCY9414]
 gi|119462407|gb|EAW43382.1| DNA polymerase III subunit alpha [Nodularia spumigena CCY9414]
          Length = 448

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 135/288 (46%), Gaps = 11/288 (3%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T    + +K++K+  +     I 
Sbjct: 33   IASNCFNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTANSGDTDKVQKYINNCVNMGIT 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            I PP +N   +DF     +I +   A++ VG      I+ A  +   F SL DFC RVD 
Sbjct: 93   IDPPDINRSGLDFTPAAGKILFGFTAVRNVGQNAIASILSARNELGQFQSLADFCDRVDL 152

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH----- 929
            + +NRR +ESL++ GA D    +R QL+  L+ +  +AQ  +K+R +   NIF       
Sbjct: 153  RAVNRRTVESLIYCGAFDKIETNRQQLINDLELVYDWAQSRDKDRASGQGNIFDLLGTNV 212

Query: 930  -----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                     F      +         +   E+ +LGFY S HPL   +     +      
Sbjct: 213  TNNQTASNAFEAVPKAQPVQDFPPQEKLRKEKELLGFYVSDHPLKSLRQAASLLSPINLS 272

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +         +    M+ + ++  T KG+++  +   +   + EA  F
Sbjct: 273  QIKEQKEDTKVCAVIMLNNVKKVMTNKGAQMAILQIEDLTAQSEAVVF 320


>gi|218441796|ref|YP_002380125.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 7424]
 gi|218174524|gb|ACK73257.1| DNA-directed DNA polymerase [Cyanothece sp. PCC 7424]
          Length = 449

 Score =  278 bits (710), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 94/293 (32%), Positives = 152/293 (51%), Gaps = 18/293 (6%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   D+ EKI+K+ ++ ++ NI 
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDSQEKIEKYRENCQKLNID 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS--ADKPFDSLEDFCSRVD 873
            + PP +N    DF     +I + L+A++ +G     +I++A   A   F+SL DFCSRVD
Sbjct: 93   VEPPDINRSQKDFTPIKEKILFGLSAVRNLGENAIENILKARQEAGGKFESLADFCSRVD 152

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----- 928
             + +NRR LE+L++ GA D    +R QL++ LD +  +AQ   K + +   NIF      
Sbjct: 153  LRIVNRRALETLIYCGAFDQINDNRHQLIEYLDIVIPWAQKRNKEKESGQLNIFDALLEN 212

Query: 929  -----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK---MGI 980
                   +  F     L   +  +   + + E+  LGFY S HPL+    IL+K   +  
Sbjct: 213  IENKNDNEVVFDQAPNLPSVADYSLDEKLKLEKEHLGFYVSEHPLN---HILKKAHVLSP 269

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                E         I +  M+ S ++  TR+G  + +V   +   + E   FP
Sbjct: 270  VNLNELETQNSRKLISVVVMINSVKKITTREGKPMAFVGLEDTTAQVEGILFP 322


>gi|255103311|ref|ZP_05332288.1| DNA polymerase III subunit alpha [Clostridium difficile QCD-63q42]
          Length = 677

 Score =  277 bits (708), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 137/726 (18%), Positives = 274/726 (37%), Gaps = 74/726 (10%)

Query: 15  QVHSSYS---LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             H  YS    L+        +D+     Q     T+     +  E         ++ II
Sbjct: 7   HSHKIYSNIRSLDVITKPQQYIDRAIKLGQNTYFTTEHGYQGNVYEAKTLCDEYKLKMII 66

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +       N K              ++++    +GY+++ + +S     +      RI
Sbjct: 67  GAEFYYVNDINEK--------DRGNYHLIVIAKNNDGYKQINKALSLAN-KNGYYYKPRI 117

Query: 132 CLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               L EI   G +++ T   +G +         +  E+ +L  K  F +  ++ +Q H 
Sbjct: 118 DEKILFEIFKPGDVVITTACVAGIL-------KLENREELILKLKNYFKNNFFLEVQSHP 170

Query: 191 GYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAH-DVLMAVAHSTVVSQKDRPRV 248
              +      V++L+  + + ++  N+S ++  E+ +     L A   +           
Sbjct: 171 HKTQALHNKDVLELSNKYNIDIIHANDSHYIYPEESKYRTKFLKAKGINYPEEDGFILDY 230

Query: 249 TPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +  R E  ++    ++  AL+NT+ I   C  I  ++  I       +   I K 
Sbjct: 231 PNSEDIFKRYEKQNVLTKQEVERALKNTL-IFDECEEITLINDDI-------KLPSISKN 282

Query: 307 EENELRN-KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              EL+       LE R     I K     +Y   + +E ++I +     YF+I    +Q
Sbjct: 283 PNKELKEILNKEWLEKR---KNIPKNRW-NEYLDAIRYEFDIIEKTHMEDYFIIDYKIVQ 338

Query: 366 WAKK--NNIPVGPGRGSGAGSVTAYALTITDIDPL--RFSLLFERFLNPDRMSMPDFDID 421
            AK+  N +    GRGS    +    L +T+ID L     L   RF++ +R+       D
Sbjct: 339 RAKQEYNGLLTKTGRGSAPSFIITNLLGLTEIDRLNAPVPLFPTRFMSVERILSAKSLPD 398

Query: 422 FC--QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
                +  +  I+  ++  G E  A +I++  LQ  +A R   +A  M  S+ D + K +
Sbjct: 399 IDLNAEDAEPFIQATRDLLGEENCAWMISYKPLQDASAFRLWCKANDMKLSEYDEVAKNL 458

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                               +    D     +++ S+   G+    S     ++I DRP+
Sbjct: 459 --------------------DKYTNDVFWKDVIKESKVFVGVVESVSFSPCSMLIYDRPI 498

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            + V + +    D      +  + +K   +K D+L +K  +L++K+ +        ++  
Sbjct: 499 DEEVGLLK--TKDGVCCNIDGYYCDKYKYLKNDYLTVKVWSLIRKTCELANISIPTIE-E 555

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
           L    D +TY +   K T  I Q++S          +   + +  A V+  RPG    + 
Sbjct: 556 LNILLDAKTYDIYKDKLTCTINQVDSDYATNLASKYKISSVAETSAFVASIRPGFASLLD 615

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL----RR 715
            + NR++    +  +  L++    ++   ++YQE +M+    L        D++    +R
Sbjct: 616 NFINRESYTTNVKELDILLE----DSYHYLMYQESIMKYLIWLGIEESESYDIINKIKKR 671

Query: 716 AMGKKI 721
            + KK 
Sbjct: 672 DLRKKS 677


>gi|325989643|ref|YP_004249342.1| DNA polymerase III subunit alpha [Mycoplasma suis KI3806]
 gi|323574728|emb|CBZ40384.1| DNA polymerase III subunit alpha [Mycoplasma suis]
          Length = 827

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 183/842 (21%), Positives = 337/842 (40%), Gaps = 150/842 (17%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITD-----TNNLFSALEFSQKACAAGIQ 68
           L V +++S+ E  +S++ +++    ++   +  T+              F  KA   G+ 
Sbjct: 11  LFVKTNHSIFESTISMDQLIEFSLKNKHKHVFFTESQWIKH-----FPTFHLKAKNKGLI 65

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           P++      +                     +L+    EGY+ L    ++  LL+     
Sbjct: 66  PLLSLHYIWENSSE----------------WLLIPKNYEGYEALSRFTNKNELLEDN--- 106

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                    E      I ++G                  +++ + +K       Y+    
Sbjct: 107 ---------EWSQIIKIFISG------------------DEKSIPWKD--DQDFYI---- 133

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-- 246
                          A +     ++   +LFL EEDY+   ++ ++ + +  S++     
Sbjct: 134 ---------------ANSDCPQGISVRENLFLKEEDYDLFALVSSLKNKSSFSRELELNS 178

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +   + L N SE  ++     + ++N +++ + C+F        L  F        +K 
Sbjct: 179 HLKNSYLLNNYSENNNV-----QRIKNLIKLLKECNFYSLREKSQLSLF--------KKN 225

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
           +  E+     + LE  + +    K     +Y++R   E+N+     +  YF IV +  Q+
Sbjct: 226 KREEILEHCSSRLEKYILEFPKEKQL---EYQKRYKREINLFDLKGYWDYFSIVWELTQY 282

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +K+NI + PGRGS  GS+  + + +  IDP ++ LL +RFLN     MPD DID    R
Sbjct: 283 IQKSNILISPGRGSSCGSLLIFLMGVNQIDPFKYGLLLDRFLNETSERMPDLDIDIEGSR 342

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R E+++++Q+ +G E                                 + K I N  +  
Sbjct: 343 RLEILKFLQSTFGEEGFIIPS---------------------------ILKRIKNINSIF 375

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL--SQLVP 544
            SLQ +  +   +++           ++  KL  L      H + I+    P+  + L  
Sbjct: 376 ASLQKVFSEEEEKDS-----------QLMGKLIDLPFLIQPHPSSII----PIFSTFLES 420

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            Y+D  S  PVT           L KFD L  + L  + + +  +        L  I F+
Sbjct: 421 TYKDDNSVFPVTPLEYSSTSYIHLQKFDLLSSQYLEFISEIIKDIG--FSSQQLFEINFE 478

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D  T++LL    T  +F L+SS ++  +   +   I D+  L+++ RPG   +I  + N 
Sbjct: 479 DKNTWNLLNRGLTYYLFHLDSSYIKSIIPMFELKSISDLAQLLAIIRPGINKHISKFLNY 538

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           K+ K+       LI  +L ET+G+I++QEQ+M I   ++G SLS +D  R  + K   EE
Sbjct: 539 KSPKDSNCPP--LIRELLLETRGIILFQEQIMNIVSKVTGMSLSSSDKYRIILQKNKIEE 596

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           +   K  F S A +   +      I+  +  F  Y FNKSHA AYA +S+Q A++K +Y 
Sbjct: 597 LSSLKREFFSLAREKKRNNFEINQIWNFINTFGKYSFNKSHAVAYAALSFQAAYLKANYC 656

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD---FKVGDNRIYYSLAA 841
            +F  +++  E       +   ++ +    +I   +          F       Y  L  
Sbjct: 657 EKFFISAIKREGLR----ESCLEEIKSMGYKIKVINFLNKVSHTGFFDSEKKEFYIGLNG 712

Query: 842 IK 843
           IK
Sbjct: 713 IK 714


>gi|325663118|ref|ZP_08151568.1| hypothetical protein HMPREF0490_02309 [Lachnospiraceae bacterium
            4_1_37FAA]
 gi|325470572|gb|EGC73802.1| hypothetical protein HMPREF0490_02309 [Lachnospiraceae bacterium
            4_1_37FAA]
          Length = 429

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 90/295 (30%), Positives = 137/295 (46%), Gaps = 12/295 (4%)

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            E +        + SHAAAYAV+SYQTA++K +YP+EF+AA MT  ++N  K+ ++   AR
Sbjct: 9    EKMEIIPKSYLSVSHAAAYAVVSYQTAYLKYYYPIEFMAALMTSVIENPTKVSEYIYAAR 68

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFC 869
            Q  I+I+PP +N     F V +  I Y LAAIK +G      I+ E   +  +  L+DF 
Sbjct: 69   QMGIKILPPDINRGVSGFSVDEGNIRYGLAAIKSIGKPVIEAIVSEREENGLYRGLKDFI 128

Query: 870  SRVDSKKL-NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             R+  K++ N+R +E+ + AGALD  G +R Q +     I       +K   +   ++F 
Sbjct: 129  ERISLKEMLNKRSIENFIKAGALDNLGGTRKQFMMIYIQIVDNVNQEKKFSMSGQMSLFD 188

Query: 929  --HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
               E      +I L              E+ VLG Y SGHPLD Y+   +K       + 
Sbjct: 189  FVDEDQKKEFEIQLPDVGEYEKETLLAFEKEVLGVYISGHPLDAYEEQWKKSVSATTLDF 248

Query: 987  V--------ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                         G    +  M+V K  K T+    + ++T  +     E   FP
Sbjct: 249  QLDEETNRTKVHDGAKEIIGGMIVGKTIKHTKTNQMMAFITVEDLLGTVEVVVFP 303


>gi|157283913|ref|YP_001468181.1| DNA polymerase III, alpha subunit [Kineococcus radiotolerans
           SRS30216]
 gi|151363055|gb|ABS06057.1| DNA polymerase III, alpha subunit [Kineococcus radiotolerans
           SRS30216]
          Length = 1280

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 141/643 (21%), Positives = 253/643 (39%), Gaps = 64/643 (9%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S  F HL V S +S   G      +    A+    A+A+TD   +   ++       AGI
Sbjct: 2   STPFTHLHVASGHSHHHGTTDPATLAAAAASAGASALALTDRGQMAGLIQHVSACRFAGI 61

Query: 68  QPIIGCQ---LDIDMQDNLKMTNQGKTPFP------TVPSIVLLVSTAEGYQRLIELVSR 118
            PI G          +D+ + +  G T          V  +    +   G+  L    + 
Sbjct: 62  DPIAGVDLALHSSTRRDSTRTSKPGTTGSGFSAGSGRVVVLAHGHTHGAGWAALCRATTA 121

Query: 119 MYLLD----QGKQSVRICLSWL------QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
            +  +        +  +  + L               +L G     + RA      +   
Sbjct: 122 AHRTNTTPSASAATASLTPADLVAALAPAAGNDPAATVLLGP-GTDLGRALATGRMREVI 180

Query: 169 KRLLTFKKLFG-DRLYVNLQRHRGYDRYRES-----QVVQLAYTHELPLVATNNSLFLSE 222
                + +L     L V +  H   + +  S     +V++ A    +P V +N    L  
Sbjct: 181 DAWEAWTRLLPASALAVEVVCHLTREGHPASVGVTARVLRAAAAVGIPTVLSNAVRLLHP 240

Query: 223 EDYEAHDV---LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--------- 270
            D    DV   + A+     +            +LK    M  +  ++  A         
Sbjct: 241 GDVPTADVGDAVAALRGLEELHAAHALSPNAQAWLKPPHLMEDLAREIATAAGVEHRGRD 300

Query: 271 -----LENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQKEEEN------------ELR 312
                LE T  +A RC   L+        R  E     I     +             LR
Sbjct: 301 HAGGLLERTAALAERCRLDLERDLGWGRARVPEPAVLGIDAAATSAGDPHGYAAALGMLR 360

Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            +A AG+  R    ++AK    +  ++R+  EL V+ R+ ++ YFL V++  +      +
Sbjct: 361 ARADAGIGRRHPGASLAK---VRAVQERVQAELAVVDRLNYATYFLAVSEATRLIHGLGV 417

Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                RGSG GSV  + L ++++DPL   LLFERF++  R ++PD D+D    RR ++ R
Sbjct: 418 R-ATARGSGVGSVLLWLLGVSNVDPLDQGLLFERFISDRRETLPDIDLDVESARRHDIYR 476

Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            +++++G ERV  + T  + +A+ A+R  G AL +    VD +   +    A  V  +A+
Sbjct: 477 AIRDRFGAERVTLMATTQAYRARGAVRAAGLALGVEPEVVDEVAASLRGVSASRVR-EAM 535

Query: 493 ADDSRFREARL---ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
           A+    RE      +   +D L++++  L+ L RH S H  G+++ D  L    P+    
Sbjct: 536 AELPELRELAELVRSHRQLDLLVDVTATLDRLPRHLSMHPCGVILSDASLLTRTPVQACG 595

Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
              + ++QF+   I+  G +K D LG++  + +  +L  + + 
Sbjct: 596 IEGMAMSQFDKDDIDPMGWLKLDVLGVRMQSAIAYTLTEIERT 638



 Score =  197 bits (501), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 98/320 (30%), Positives = 154/320 (48%), Gaps = 28/320 (8%)

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             DL  I  DDH T+ L+ +  TLG+FQ+ES G R+ L   QP    D++  V+L+RPGP+
Sbjct: 703  PDLDAIALDDHATFELIRSTHTLGVFQIESPGQRELLGKFQPRAFSDLVIDVALFRPGPM 762

Query: 656  --DNIVVYNNRKNGK----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
              D I  +    +G           HP + P+L ET GV+I+ EQVM+I  + +G  L+ 
Sbjct: 763  AGDMISPFLEGHHGWVATGGPRRLPHPDLTPILSETHGVVIFHEQVMRILDVFTGCGLAR 822

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            ADV RR +     +   + +  F + A+  G  + +   +++L+A    +GF ++HAAA+
Sbjct: 823  ADVWRRHLS--DPDARVEVEADFRTAATARGYPRDVVDAVWKLIAAHGGFGFARAHAAAF 880

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A I+YQ+AW+K HYPV+FL   +  +   +   +    +AR+  I I+P  V T    ++
Sbjct: 881  AAITYQSAWLKAHYPVQFLTGLLEHDPG-MYPRRLLVAEARRLGIAILPVDVQTSTDVWR 939

Query: 830  VG-------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
                              I   L  +K +       I+     +PF  + DF  R   + 
Sbjct: 940  AELPAPTGQSAGGERRWGIRPPLTVVKDLHAAEVERIVAT---QPFADVGDFRDRARPR- 995

Query: 877  LNRRVLESLVFAGALDCFGY 896
              R  L  L   GALD    
Sbjct: 996  --RPTLIRLARLGALDDLAG 1013



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 10/124 (8%)

Query: 910  KYAQWVEKNRTNKHENI-FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
            ++A W           +         +    L     +  S          G     H L
Sbjct: 1123 RFAGWH-----PGQLVLPLGDLDLASAPAGHLAPTPEQQVSTELA----STGMDLQQHIL 1173

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
              + P LR+ G    E  +      ++ +A + V+ Q    R G R+ ++T  +     +
Sbjct: 1174 TPHLPELRRRGFTPAERLLEVRTDVDVLVAGVRVATQTPPVRSGRRVVFLTLDDGTGCVD 1233

Query: 1029 ANFF 1032
               F
Sbjct: 1234 VTVF 1237


>gi|261349359|gb|ACX71239.1| DNA polymerase III alpha subunit [Streptococcus suis]
          Length = 318

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 113/326 (34%), Positives = 184/326 (56%), Gaps = 9/326 (2%)

Query: 590 AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            +   ++D++ I  +D +T  L     T GIFQ E  G    L  ++P   EDI+A  SL
Sbjct: 2   ERYQQEIDIAKIDLEDKKTLELFAAGRTKGIFQFEQPGAISVLRRVKPGRFEDIVATTSL 61

Query: 650 YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            RPG  D    +  RK+G+E +  + P I P+L+ T G+++YQEQVMQIAQ+ +G++L +
Sbjct: 62  NRPGASDYSDNFVKRKHGQETVDLLDPTIAPILQPTYGIMLYQEQVMQIAQVYAGFTLGK 121

Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
           AD+LRRAM KK  +EM   +  F+ GA KNG ++  A  IF ++AKFA YGFN+SHA AY
Sbjct: 122 ADLLRRAMSKKNAQEMQAMEAEFLQGALKNGHAEESAREIFGMMAKFAGYGFNRSHAYAY 181

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
           + +++Q A+ K+HY   F    +            + +DA QF+ ++   ++N      K
Sbjct: 182 SALAFQMAYFKSHYTDVFFDVMLNHSS------SAYIEDAMQFDFEVARLTINNIPYHDK 235

Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              +++Y  L  +KG+    A  I++     P+ S+EDF  R+      + +L  L+  G
Sbjct: 236 FDKSKVYLGLKTLKGLPKDLALWILDHR---PYKSVEDFILRLPDNFKKKDLLIPLIQIG 292

Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWV 915
             D F  +R +++++LDN+  +A+ +
Sbjct: 293 LFDDFDANRKKIIENLDNLFVFAEAI 318


>gi|325973200|ref|YP_004250264.1| DNA polymerase III subunit alpha [Mycoplasma suis str. Illinois]
 gi|323651802|gb|ADX97884.1| DNA polymerase III, alpha subunit [Mycoplasma suis str. Illinois]
          Length = 826

 Score =  273 bits (697), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 185/842 (21%), Positives = 339/842 (40%), Gaps = 151/842 (17%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITD-----TNNLFSALEFSQKACAAGIQ 68
           L V +++S+ E  +S++ +++    ++   +  T+              F  KA   G+ 
Sbjct: 11  LFVKTNHSIFESTISMDQLIEFSLKNKHKHVFFTESQWIKH-----FPTFHLKAKNKGLI 65

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           P++      +                     +L+    EGY+ L    ++  LL+     
Sbjct: 66  PLLSLHYIWENSSE----------------WLLIPKNYEGYEALSRFTNKNELLEDN--- 106

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                    E      I ++G                  +++ + +K       Y+    
Sbjct: 107 ---------EWSQIIKIFISG------------------DEKSIPWKD--DQDFYI---- 133

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-- 246
                          A +     ++   +LFL EEDY+   ++ ++ + +  S++     
Sbjct: 134 ---------------ANSDCPQGISVRENLFLKEEDYDLFALVSSLKNKSSFSRELELNS 178

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +   + L N SE  ++     + ++N +++ + C+F        L  F        +K 
Sbjct: 179 HLKNSYLLNNYSENNNV-----QRIKNLIKLLKECNFYSLREKSQLSLF--------KKN 225

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
           +  E+     + LE  + +    K     +Y++R   E+N+     +  YF IV +  Q+
Sbjct: 226 KRGEILEHCSSRLEKYILEFPKEKQL---EYQKRYKREINLFDLKGYWDYFSIVWELTQY 282

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +K+NI + PGRGS  GS+  + + +  IDP ++ LL +RFLN     MPD DID    R
Sbjct: 283 IQKSNILISPGRGSSCGSLLIFLMGVNQIDPFKYGLLLDRFLNETSERMPDLDIDIEGSR 342

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R E+++++Q+ +G E     I    L+    +  +  ALQ  +S+ ++  +LI       
Sbjct: 343 RLEILKFLQSTFGEE---SFIIPSILKRIKNINSIFAALQKVFSEEEKDSQLIG------ 393

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL--SQLVP 544
                                         KL  L      H + I+    P+  + L  
Sbjct: 394 ------------------------------KLIDLPFLIQPHPSSII----PIFSTFLES 419

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            Y+D  S  PVT           L KFD L  + L  + + +  +        L  I F+
Sbjct: 420 TYKDDNSVFPVTPLEYSSTSYIHLQKFDLLSSQYLEFISEIIKDIG--FSSQQLFEINFE 477

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           D  T++LL    T  +F L+SS ++  +   +   I D+  L+++ RPG   +I  + N 
Sbjct: 478 DKNTWNLLNRGLTYYLFHLDSSYIKSIIPMFELKSISDLAQLLAIIRPGINKHISKFLNY 537

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           K+ K+       LI  +L ET+G+I++QEQ+M I   ++G SLS +D  R  + K   EE
Sbjct: 538 KSPKDSNCPP--LIRELLLETRGIILFQEQIMNIVSKVTGMSLSSSDKYRIILQKNKIEE 595

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           +   K  F S A +   +      I+  +  F  Y FNKSHA AYA +S+Q A++K +Y 
Sbjct: 596 LSSLKREFFSLAREKKRNNFEINQIWNFINTFGKYSFNKSHAVAYAALSFQAAYLKANYC 655

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD---FKVGDNRIYYSLAA 841
            +F  +++  E  +    +   ++ +    +I   +          F       Y  L  
Sbjct: 656 EKFFISAIKREGLS----ESCLEEIKSMGYKIKVINFLNKVSHTGFFDSEKKEFYIGLNG 711

Query: 842 IK 843
           IK
Sbjct: 712 IK 713


>gi|19548816|gb|AAL90805.1| polymerase III subunit alpha [Escherichia coli]
          Length = 223

 Score =  272 bits (695), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 103/223 (46%), Positives = 149/223 (66%), Gaps = 6/223 (2%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHLLTT 614
           +TLT++  +L+ + +R        +D++ IP DD +++ +L  
Sbjct: 180 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 222


>gi|284928952|ref|YP_003421474.1| DNA polymerase III subunit alpha [cyanobacterium UCYN-A]
 gi|284809411|gb|ADB95116.1| DNA polymerase III, alpha subunit [cyanobacterium UCYN-A]
          Length = 450

 Score =  271 bits (694), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 86/289 (29%), Positives = 158/289 (54%), Gaps = 11/289 (3%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA I+YQTA++K +YPVE++AA +T   DN +KI+K+ ++ ++  IQ
Sbjct: 33   IASNCFNKSHSTAYAYITYQTAYLKANYPVEYMAALLTANSDNQDKIEKYRENCQKMGIQ 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS--ADKPFDSLEDFCSRVD 873
            ++PP ++    DF   +N+I + L+A++ +G      I++A    +  F+SL DFCS  D
Sbjct: 93   VLPPDISLSLKDFTPLENQILFGLSAVRNLGEGAIDSILKARIQLNTKFNSLADFCSNTD 152

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----- 928
            S+ +N+R LE+L+++GA D    +R QL+  LD +  +AQ   K++ +   N+F      
Sbjct: 153  SRTVNKRALETLIYSGAFDSVSNNRKQLINDLDLVISWAQKKAKDKESGQLNLFDLITNN 212

Query: 929  ----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                +    + D  +       +   + + E+  LGFY S HPL + +  +  +    ++
Sbjct: 213  ADNSNLDLEYEDVPSSPSVEDFSLQDKLKFEKEYLGFYISEHPLRIIEEPVSILSPVSFD 272

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            E +      NI + + +   ++  T+KG ++ ++   + ++  E   FP
Sbjct: 273  EIIVQKAKRNITILSTIAEIKEYTTKKGDQMAFLVLEDTSRHIEGVCFP 321


>gi|330880634|gb|EGH14783.1| error-prone DNA polymerase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 305

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 97/302 (32%), Positives = 154/302 (50%), Gaps = 14/302 (4%)

Query: 580 TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
           + L+++ D +   RG +  L+ +P DD ETY +++   T+G+FQ+ES      L  ++P+
Sbjct: 1   SALRRTFDLVHLHRGKRWTLADLPGDDRETYEMISRADTIGVFQIESRAQMAMLPRLRPE 60

Query: 639 CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
              D++  V++ RPGPI  D +  Y  R+N +E I    P +  + + T GV ++QEQVM
Sbjct: 61  KFYDLVIEVAIVRPGPIQGDMVHPYLRRRNKEEAITYP-PKLKSVFERTLGVPLFQEQVM 119

Query: 697 QIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           ++A + +GY+  EAD LRRAM   K    ++  +ER  +G  KNG     A  IFE +  
Sbjct: 120 EVAIIAAGYTPGEADELRRAMAAWKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKG 179

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
           F  YGF +SHAA++A+++Y + W+K H P  F  A +           +  QDAR+ +I+
Sbjct: 180 FGSYGFPESHAASFALLTYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIE 239

Query: 816 IMPPSVNTPCVDFKVGD---------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
           I P  V     D  +             I   L  ++G     AR I  A + + F    
Sbjct: 240 IRPVDVRYSDWDCSLEPLDHPDSTRNLAIRLGLRMVRGFREDDARRIETARSKRLFSDAT 299

Query: 867 DF 868
           D 
Sbjct: 300 DL 301


>gi|289752087|ref|ZP_06511465.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           T92]
 gi|289692674|gb|EFD60103.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           T92]
          Length = 399

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 88/357 (24%), Positives = 157/357 (43%), Gaps = 18/357 (5%)

Query: 3   QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           + +  S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A
Sbjct: 57  ERVGSSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAA 116

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               ++ + G       + +L  T + + P P  P +++L    EGY+RL   ++  +L 
Sbjct: 117 AELDVRTVFGA------ELSLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLA 170

Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-R 181
              K   R     L E       +LTG   G + +A        A++ L      F   R
Sbjct: 171 GGEKGKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSR 230

Query: 182 LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA-HDVLMAVAHSTV 239
           + + L  H    D  R + +  LA    + +VAT  + F           +    A  ++
Sbjct: 231 VSIELTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSL 290

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            S           +L++  EM  +F+  PEA+    E+  R +F LQ+ AP LP F   +
Sbjct: 291 DSAAGWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERWAFGLQLIAPRLPPFDVPD 350

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                  E++ LR+  +AG   R      A   ++     +++ EL VIA+++F GY
Sbjct: 351 G----HTEDSWLRSLVMAGARERYGPPKSAPRAYS-----QIEHELKVIAQLRFPGY 398


>gi|298500381|ref|ZP_07010186.1| DNA polymerase III [Vibrio cholerae MAK 757]
 gi|297541074|gb|EFH77128.1| DNA polymerase III [Vibrio cholerae MAK 757]
          Length = 278

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 77/246 (31%), Positives = 122/246 (49%), Gaps = 3/246 (1%)

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTT 848
            A MT +MDN EK+     + +   + ++PP +N+    F V DN  I Y + AIKGVG  
Sbjct: 2    AVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKGVGEG 61

Query: 849  TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                I+EA      F  L DFC+R+D KK+N+RV+E L+ AGALD  G  R  ++ S+D+
Sbjct: 62   PIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMASVDD 121

Query: 908  IQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
              + A    +       ++F          +    +       VR E E+  LG Y +GH
Sbjct: 122  AVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLYLTGH 181

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P+D Y   L K       E+  T R  ++ +A +V++ +   T++G+RIG +T  + +  
Sbjct: 182  PVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGR 241

Query: 1027 YEANFF 1032
             E   +
Sbjct: 242  MEVMLY 247


>gi|215428873|ref|ZP_03426792.1| error-prone DNA polymerase [Mycobacterium tuberculosis T92]
          Length = 380

 Score =  267 bits (682), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 88/357 (24%), Positives = 157/357 (43%), Gaps = 18/357 (5%)

Query: 3   QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           + +  S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A
Sbjct: 38  ERVGSSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAA 97

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               ++ + G       + +L  T + + P P  P +++L    EGY+RL   ++  +L 
Sbjct: 98  AELDVRTVFGA------ELSLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLA 151

Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-R 181
              K   R     L E       +LTG   G + +A        A++ L      F   R
Sbjct: 152 GGEKGKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSR 211

Query: 182 LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA-HDVLMAVAHSTV 239
           + + L  H    D  R + +  LA    + +VAT  + F           +    A  ++
Sbjct: 212 VSIELTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSL 271

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            S           +L++  EM  +F+  PEA+    E+  R +F LQ+ AP LP F   +
Sbjct: 272 DSAAGWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERWAFGLQLIAPRLPPFDVPD 331

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                  E++ LR+  +AG   R      A   ++     +++ EL VIA+++F GY
Sbjct: 332 G----HTEDSWLRSLVMAGARERYGPPKSAPRAYS-----QIEHELKVIAQLRFPGY 379


>gi|255030789|ref|ZP_05302740.1| hypothetical protein LmonL_19816 [Listeria monocytogenes LO28]
          Length = 279

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 99/271 (36%), Positives = 168/271 (61%), Gaps = 3/271 (1%)

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            RK+GKEKI   HP +  +L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  
Sbjct: 1   ARKHGKEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKA 60

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
           + +++++  F+ GA   G S+  A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H
Sbjct: 61  DVLNEERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAH 120

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAA 841
           +P  F+++ ++    N +KI ++  +A+ + I ++ PS+N     F++ +   I YS   
Sbjct: 121 FPAAFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRV 180

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           I+ V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +
Sbjct: 181 IRKVPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATI 240

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
           L ++D + +Y   + ++  +K  N+FA +  
Sbjct: 241 LATIDAVLQYISLLGED--SKGMNLFAEDDE 269


>gi|56750961|ref|YP_171662.1| DNA polymerase III subunit alpha [Synechococcus elongatus PCC 6301]
 gi|81299381|ref|YP_399589.1| DNA polymerase III subunit alpha [Synechococcus elongatus PCC 7942]
 gi|56685920|dbj|BAD79142.1| DNA polymerase III alpha subunit [Synechococcus elongatus PCC 6301]
 gi|81168262|gb|ABB56602.1| DNA polymerase III, alpha subunit / Intein [Synechococcus elongatus
            PCC 7942]
          Length = 447

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/286 (30%), Positives = 141/286 (49%), Gaps = 9/286 (3%)

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A   FNKSH+ AY  +++QTA++K ++PVE++AA +T+   N +K++K+  +     I++
Sbjct: 34   ASNCFNKSHSTAYGYVTFQTAYLKANFPVEYMAALLTVNSGNADKVQKYIANCAAMGIEV 93

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSK 875
            +PP +N   VDF    +RI + L+AI+ +G      I+ A     PF SL D C RVD+ 
Sbjct: 94   LPPDINRSGVDFTPTGDRILFGLSAIRNLGLGAIESILAARDVGGPFLSLADLCDRVDTG 153

Query: 876  KLNRRVLESLVFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--- 930
             LNRR +ESL+ AGALD    G +R QL+  L  +  +A    K+R +   N+F      
Sbjct: 154  SLNRRAMESLIHAGALDVLETGANRQQLVADLPLVIDWANSRAKDRASGQGNLFDMLGSN 213

Query: 931  ---KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                               +   + + E+ +LGFY S HPL V +   R +      +  
Sbjct: 214  DSNSSPLDTAPKAPAVPDYSPDEKLKLEKELLGFYLSDHPLKVVQEPARLLAPASISDLE 273

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   I   A++   +   T+KG R+  +   + +   EA  FP
Sbjct: 274  DYCDRGLISTIALLTEVKPVVTKKGDRMAILRIEDLSGNTEAVVFP 319


>gi|41817835|gb|AAS11675.1| polymerase III subunit alpha [Shigella flexneri]
          Length = 300

 Score =  265 bits (678), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 104/301 (34%), Positives = 164/301 (54%), Gaps = 13/301 (4%)

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
           P+R+SMPDFD+DFC ++ D+VI +V                                   
Sbjct: 1   PERVSMPDFDVDFCMEKLDQVIEHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
                        P   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA
Sbjct: 61  XXXXXXXXXXXXXPGMTL-AKAFEAELQLPEIYEADEEVKALIDMARKLEGVTRNAGKHA 119

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +
Sbjct: 120 GGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI 179

Query: 590 AQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            +R        +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+I
Sbjct: 180 NKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMI 239

Query: 645 ALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQ 697
           ALV+L+RPGP+ + +   + +RK+G+E+I        H  +  +L+ T G+I+YQEQVMQ
Sbjct: 240 ALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKSVLEPTYGIILYQEQVMQ 299

Query: 698 I 698
           I
Sbjct: 300 I 300


>gi|325989695|ref|YP_004249394.1| DNA polymerase III polC-type [Mycoplasma suis KI3806]
 gi|323574780|emb|CBZ40440.1| DNA polymerase III, polC-type [Mycoplasma suis]
          Length = 1438

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 161/912 (17%), Positives = 293/912 (32%), Gaps = 207/912 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            ++++     +G + L ELVS  +  +      R+    + E   E LI+L+  ++  +  
Sbjct: 596  NVIIFAKNQKGLKSLYELVSIAHT-EHFVDKPRLKWDAI-ETRRENLIVLSSPTNSALVN 653

Query: 158  AFFFNSSQVAEKRLLTFKKL---FGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPL 211
            A   +     +K    F  +           + R    D   E+ +    + A   +  L
Sbjct: 654  AVLNDEFDTFKKEGEKFDYISLPPPSNFSHEISRGFFEDGEVETLLKTFYEWADNCQFKL 713

Query: 212  VATNNSLFLSEEDYEAHDVLMAVA-----HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
            +A     +   ++ E + VL+           + S K    V PD+  +    +++ +  
Sbjct: 714  IANYCLKYQDFKEVEQYKVLVHAKSIGGKRHYLYSSKHGNDVLPDYSWRTTERLIAEYDF 773

Query: 267  L------PEALENTV--EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
            L       E L  T   E+A   S  + V+          +     +  +  +  K  A 
Sbjct: 774  LSLSEKEKEDLFFTYRYELANSVSPDIFVNK---SELAIPKIPGALENIKEYIHRKLTAK 830

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
               +L           +  +  ++ EL  I    +   +      +Q +K     VG  R
Sbjct: 831  YGKKL----------DKQIQATINRELTGIVENGYESVYWCAHLLVQRSKSEGFLVG-SR 879

Query: 379  GSGAGSVTAYALTITDIDPLRF-------------------------------------- 400
            GS   S  A+AL I+D++PL                                        
Sbjct: 880  GSVGSSFLAHALEISDVNPLPPHYYCSQCSYFLMCTNFRESGFDLETRRCPQCASELSSD 939

Query: 401  --SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
              ++ FE FL  +R  +PD D++F    + +   +++  +G E   +  T  ++  K + 
Sbjct: 940  GQNIPFETFLGLERNKIPDIDLNFSGQYQQKAHNFLRELFGKEHTFRAGTISAIAEKTSF 999

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
                            L K                    F +    D +   L  +S +L
Sbjct: 1000 ---------------ALAK-------------------NFLQDNQIDFNKGHLHWLSYRL 1025

Query: 519  EGLYRHASTHAAGIVIGDR--PLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
              + R    H  GI++  R   +    P+     D+ S+   T F+    +   L KFD 
Sbjct: 1026 TDVKRTTGQHPGGIIVIPRGESIYNYTPVNFPANDIESEWLTTHFDKDTFKD-SLFKFDI 1084

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT-----------------KG 616
            LG    T+L      L      VDL  IPF +     + +                   G
Sbjct: 1085 LGQDDPTILA-----LLSNFTGVDLEKIPFKNERLLKMFSDISVLEIPQNKLELLGEVVG 1139

Query: 617  TLGIFQLESSGMRQALE--GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
            TLG+ +  +   R+ ++    +     D+I +  +            N  KN  EK    
Sbjct: 1140 TLGLPEFGTEKTREIMKACRSKIKHFSDLIRISGISHGK--------NVWKNNIEK---- 1187

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
              LI         VI  ++ +M    L     +  A  +  ++ +      +       +
Sbjct: 1188 --LISSQKLSLNEVITCRDDIMNY-LLEKKIDIQNAFKITESVRRGGGIPPENLPLLRKA 1244

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            G  +  I    A  I         Y F K+HA AY ++ ++ A+ K  YPV+F AA +T+
Sbjct: 1245 GVPEWYI--ECANKI--------TYIFPKAHATAYVLMCWKIAYFKLEYPVDFYAAYLTI 1294

Query: 795  ---------------------------------EMDNVEKIKKFC------QDARQFNIQ 815
                                               +N+EK K          +     I 
Sbjct: 1295 TNRHFDVETLTTNDLATIKRKYQEGKMLIKSKKSGENIEKTKYLVIIYEVALEMISRGIT 1354

Query: 816  IMPPSVNTP-CVDFKVGDNRI--YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871
                 +N      FK            ++I  +G  TA+ + +       F + ED   R
Sbjct: 1355 FKMVDLNESLASTFKPDRKNKTILLPFSSIARLGAITAKQLEDERNRGGKFLNREDLEKR 1414

Query: 872  VDSKKLNRRVLE 883
            V       ++LE
Sbjct: 1415 VKLNVSILKLLE 1426



 Score = 44.6 bits (104), Expect = 0.094,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 2   TQYLEKS--PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
           TQ+ + S   +F  L V++ YS  +G  +        A      +A+TD NN+ S  E  
Sbjct: 296 TQFTDNSEKKAF-PLNVYTKYSSFDGLFTSAEWAKLSAECGYDVLALTDFNNVHSFPESE 354

Query: 60  QKACAAGIQPIIGCQLDIDMQD 81
           +      ++ + G + ++   D
Sbjct: 355 KSVKKNKLKALYGAEFEVVSSD 376


>gi|148996699|ref|ZP_01824417.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP11-BS70]
 gi|147757274|gb|EDK64313.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP11-BS70]
          Length = 553

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 98/536 (18%), Positives = 193/536 (36%), Gaps = 97/536 (18%)

Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            + FE FL  D   +PD D++F  + +      V++ +G E   +  T G++ AK A   
Sbjct: 54  DIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGF 113

Query: 461 VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
           V +  +  Y +  R                              D  V+RL   +Q   G
Sbjct: 114 V-KGYERDYGKFYR------------------------------DAEVERL---AQGAAG 139

Query: 521 LYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLG 575
           + R    H  GIV+      +    P+         +   T FN   I++  ++K D LG
Sbjct: 140 VKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLG 198

Query: 576 LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
               T+++K  D        +D + IP DD     L +    LG+   E  G    + G+
Sbjct: 199 HDDPTMIRKLQDL-----SGIDPNKIPMDDEGVMALFSGTDVLGVTP-EQIGTPTGMLGI 252

Query: 636 QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQ 694
                  +  +V    P     ++  +   +G +  + +   LI   + +   VI  ++ 
Sbjct: 253 PEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDD 312

Query: 695 VM---QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           +M     A L    + +  + +R+ +  KI EE   ++  +I     N + +    +  +
Sbjct: 313 IMVYLMHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMKANKVPEWYIESCGK 369

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-KIK------- 803
           +      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++     + K         
Sbjct: 370 I-----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIRAKAFDIKTMGAGLEVI 424

Query: 804 ---------------------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRI 835
                                      +   +  +   +     +      +F +  + +
Sbjct: 425 KRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKFGKLDLYRSQATEFLIDGDTL 484

Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
                A+ G+G   A+ ++ A  +  F S  +   R     L+  ++E +   G L
Sbjct: 485 IPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---GGLSSTLVEKMDEMGIL 537


>gi|325973260|ref|YP_004250324.1| DNA polymerase III PolC [Mycoplasma suis str. Illinois]
 gi|323651862|gb|ADX97944.1| DNA polymerase III, PolC [Mycoplasma suis str. Illinois]
          Length = 1438

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 162/912 (17%), Positives = 293/912 (32%), Gaps = 207/912 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            ++++     +G + L ELVS  +  +      R+    + E   E LI+L+  ++  +  
Sbjct: 596  NVIIFAKNQKGLKSLYELVSIAHT-EHFVDKPRLKWDAI-ETRRENLIVLSSPTNSALVN 653

Query: 158  AFFFNSSQVAEKRLLTFKKL---FGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPL 211
            A   +     +K    F  +           + R    D   E+ +    + A   +  L
Sbjct: 654  AVLNDEFDTFKKEGEKFDYISLPPPSNFSHEISRGFFEDGEVETLLKTFYEWADNCQFKL 713

Query: 212  VATNNSLFLSEEDYEAHDVLMAVA-----HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
            +A     +   ++ E + VL+           + S K    V PD+  +    ++S +  
Sbjct: 714  IANYCLKYQDFKEVEQYKVLVHAKSIGGKRHYLYSSKHGNDVLPDYSWRTTERLISEYDF 773

Query: 267  L------PEALENTV--EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
            L       E L  T   E+A   S  + V+          +     +  +  +  K  A 
Sbjct: 774  LSLSEKEKEDLFFTYRYELANSVSPDIFVNK---SELAIPKIPGALENIKEYIHRKLTAK 830

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
               +L           +  +  ++ EL  I    +   +      +Q +K     VG  R
Sbjct: 831  YGKKL----------DKQIQATINRELTGIVENGYESVYWCAHLLVQRSKSEGFLVG-SR 879

Query: 379  GSGAGSVTAYALTITDIDPLRF-------------------------------------- 400
            GS   S  A+AL I+D++PL                                        
Sbjct: 880  GSVGSSFLAHALEISDVNPLPPHYYCSQCSYFLMCTNFRESGFDLETRRCPQCASELSSD 939

Query: 401  --SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
              ++ FE FL  +R  +PD D++F    + +   +++  +G E   +  T  ++  K + 
Sbjct: 940  GQNIPFETFLGLERNKIPDIDLNFSGQYQQKAHNFLRELFGKEHTFRAGTISAIAEKTSF 999

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
                            L K                    F +    D +   L  +S +L
Sbjct: 1000 ---------------ALAK-------------------NFLQDNQIDFNKGHLHWLSYRL 1025

Query: 519  EGLYRHASTHAAGIVIGDR--PLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
              + R    H  GI++  R   +    P+     D+ S+   T F+    +   L KFD 
Sbjct: 1026 TDVKRTTGQHPGGIIVIPRGESIYNYTPVNFPANDIESEWLTTHFDKDTFKD-SLFKFDI 1084

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT-----------------KG 616
            LG    T+L      L      VDL  IPF +     + +                   G
Sbjct: 1085 LGQDDPTILA-----LLSNFTGVDLEKIPFKNERLLKMFSDISVLEIPQNKLELLGEVVG 1139

Query: 617  TLGIFQLESSGMRQALE--GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
            TLG+ +  +   R+ ++    +     D+I +  +            N  KN  EK    
Sbjct: 1140 TLGLPEFGTEKTREIMKACRSKIKHFSDLIRISGISHGK--------NVWKNNIEK---- 1187

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
              LI         VI  ++ +M    L     +  A  +  ++ +      +       +
Sbjct: 1188 --LISSQKLSLNEVITCRDDIMNY-LLEKKIDIQNAFKITESVRRGGGIPPENLPLLRKA 1244

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            G  +  I    A  I         Y F K+HA AY ++ ++ A+ K  YPV+F AA +T+
Sbjct: 1245 GVPEWYI--ECANKI--------TYIFPKAHATAYVLMCWKIAYFKLEYPVDFYAAYLTI 1294

Query: 795  ---------------------------------EMDNVEKIKKFC------QDARQFNIQ 815
                                               +N+EK K          +     I 
Sbjct: 1295 TNRHFDVETLTTNDLATIKRKYQEGKMLIKSKKSGENIEKTKYLVIIYEVALEMISRGIT 1354

Query: 816  IMPPSVNTP-CVDFKVGDNRI--YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871
                 +N      FK            ++I  +G  TA+ + +       F + ED   R
Sbjct: 1355 FKMVDLNESLASTFKPDRKNKTILLPFSSIARLGAITAKQLEDERNRGGKFLNREDLEKR 1414

Query: 872  VDSKKLNRRVLE 883
            V       ++LE
Sbjct: 1415 VKLNVSILKLLE 1426



 Score = 44.6 bits (104), Expect = 0.094,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 2   TQYLEKS--PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
           TQ+ + S   +F  L V++ YS  +G  +        A      +A+TD NN+ S  E  
Sbjct: 296 TQFTDNSEKKAF-PLNVYTKYSSFDGLFTSAEWAKLSAECGYDVLALTDFNNVHSFPESE 354

Query: 60  QKACAAGIQPIIGCQLDIDMQD 81
           +      ++ + G + ++   D
Sbjct: 355 KSVKKNKLKALYGAEFEVVSSD 376


>gi|19548850|gb|AAL90822.1| polymerase III subunit alpha [Escherichia coli]
          Length = 215

 Score =  264 bits (674), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 102/216 (47%), Positives = 145/216 (67%), Gaps = 6/216 (2%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHE 607
           +TLT++  +L+ + +R        +D++ IP DD +
Sbjct: 180 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 215


>gi|258614815|ref|ZP_05712585.1| DNA polymerase III PolC [Enterococcus faecium DO]
          Length = 446

 Score =  264 bits (674), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 98/499 (19%), Positives = 171/499 (34%), Gaps = 112/499 (22%)

Query: 144 LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYV-----NLQRHRGYDRYR 196
           L++ +    G I  A      + A  R   +   ++    +Y       L ++       
Sbjct: 1   LLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYAPLIEQELVKNEHDLEEI 60

Query: 197 ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKN 256
              +V++  + +  +VAT N  +L+EED     +L+        +        PD + + 
Sbjct: 61  IQNLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILINSMGG---ANPLNRHSLPDVHFRT 117

Query: 257 RSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             EM++ F  L E       +ENT +IA  C  ++ V   +    I    D+I   E + 
Sbjct: 118 TDEMLTAFHFLGEETAKEIVVENTNKIADICEEVIPVKDELYTPKIPGSEDEI--SELSY 175

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            + K + G                +  ++RL  ELN I    FS  +LI    +  + ++
Sbjct: 176 TKAKQMYG------------DPLPEIIQKRLKKELNSINGNGFSVIYLIAQKLVHKSNED 223

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPL-------------------------------- 398
              VG  RGS   S  A    IT+++PL                                
Sbjct: 224 GYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEKQCP 282

Query: 399 ---------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                       + FE FL      +PD D++F  D + E   Y +  +G + V +  T 
Sbjct: 283 KCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRAGTI 342

Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
           G++  K A   V                            +    D+  +        VD
Sbjct: 343 GTVADKTAYGYV----------------------------KGYERDNNLQ---FRSAEVD 371

Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIE 564
           RL   ++   G+ R    H  GI++      +    P+     D  S+   T F+   I 
Sbjct: 372 RL---AKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWKTTHFDFHSIH 428

Query: 565 KAGLIKFDFLGLKTLTLLQ 583
              ++K D LG    T+++
Sbjct: 429 D-NVLKLDILGHDDPTVIR 446


>gi|207108969|ref|ZP_03243131.1| DNA polymerase III subunit alpha [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 256

 Score =  263 bits (673), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 112/256 (43%), Positives = 161/256 (62%), Gaps = 9/256 (3%)

Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
           +G E I      ++P+LK T G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M
Sbjct: 1   HGIEPIAYAFKELEPILKPTYGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIM 60

Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              K +F+ GA   G     A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  
Sbjct: 61  ADNKAKFVEGAKNLGHDGQKAANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKH 120

Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY--------- 836
           EF+AA +T E + +E + ++  + R   I++MPP +N+   DF V + +           
Sbjct: 121 EFMAAMLTSESNKIESVARYIDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIV 180

Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
           + L AIKGVG    ++I+E  A   + SLEDF SRVD  KL ++ LE LV +G+LD  GY
Sbjct: 181 FGLGAIKGVGGEPIKNIIEERAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGY 240

Query: 897 SRMQLLQSLDNIQKYA 912
           +R  +L +LD I    
Sbjct: 241 TRKTMLANLDLICDAG 256


>gi|57867460|ref|YP_189102.1| DNA polymerase III, alpha subunit, putative [Staphylococcus
           epidermidis RP62A]
 gi|57638118|gb|AAW54906.1| DNA polymerase III, alpha subunit, putative [Staphylococcus
           epidermidis RP62A]
          Length = 828

 Score =  262 bits (669), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 129/543 (23%), Positives = 236/543 (43%), Gaps = 57/543 (10%)

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           D DID    +R  +I  ++  YG +RV  + T+G+  AK+A++   R L +P ++   L 
Sbjct: 2   DIDIDCEGSKRQRIIGALKKHYGEDRVLNVCTYGTEGAKSAIKMAARGLNIPDTEAQYLG 61

Query: 477 KLIPNDPAHPVSLQAI---------ADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
             I  +     S++             D++F+      P   RLLE + KLEGL      
Sbjct: 62  SFIKVERGQQWSIKDTLYGNPDKDRKPDTQFKNEMEKYP---RLLETAMKLEGLVTRRGI 118

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           HA G++I +    +   +      D+ VTQ+N+   E  G +KFD L ++ L  ++ +L+
Sbjct: 119 HAGGVIIFNDEAYKNNAIMTASGGDVHVTQYNLSDSEYMGGVKFDLLSVENLDRIRATLE 178

Query: 588 FLAQRGVKVD-------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L++  +  +                +  + +E + L +T     +FQ ++   +  L+ 
Sbjct: 179 LLSKDVLIDNTKSLRENFSDLLHPKNLDLESNEYFELASTGEINDLFQFQTEIGQTTLKR 238

Query: 635 MQPDCIEDIIALVSLYR---PGPIDNIVVYNNRKNGKEKI----------VSIHPLIDPM 681
           +QP+  E   A  SL R    G    I  Y   KN   +                +++  
Sbjct: 239 VQPETFEQFCAANSLMRLQSDGEEQPIDKYIRHKNDINEWYKEMREFGLNEEEIKIMEEH 298

Query: 682 LKETQGVIIYQEQVM--QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
           L   +G+ I QE  M       +S +++ E + LR+A+ K     +D+ K  F S   + 
Sbjct: 299 LLHDKGLNITQENSMGLSADNRISNFTILEQNKLRKAIAKPKGSALDQIKSLFYSKGKEC 358

Query: 740 GISKTIAVNIFE-LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP-VEFLAASMTLEMD 797
           G  +     ++    A    Y F+  H  AY+VI  Q   +   +P + +  A + ++ D
Sbjct: 359 GAREVFLDYVWNVQFAMQFSYSFSLLHTTAYSVIGIQNLELNRRFPRIYWQTACLNVDSD 418

Query: 798 ---------NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK--VGDNRIYYSLAAIKGVG 846
                    + EKI       ++  + +  PS+N   ++F   V  N I Y L  +K + 
Sbjct: 419 SISTDSKDIDYEKIANGIGKMKENGVTVKLPSINKSTLEFSPDVEHNAIVYGLKPVKNIN 478

Query: 847 TTTARHIMEASADKPFDSLEDFCSRV-DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                HI+   A++P+ SL+D  +++ D+K +  + L S+V +G LD FG  +  ++  +
Sbjct: 479 NEIVDHII---ANRPYHSLDDVLTKLYDTKLITNKHLISIVKSGMLDEFGERKKIMMDVV 535

Query: 906 DNI 908
             I
Sbjct: 536 KYI 538


>gi|149002437|ref|ZP_01827371.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP14-BS69]
 gi|147759374|gb|EDK66366.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP14-BS69]
          Length = 419

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 93/337 (27%), Positives = 161/337 (47%), Gaps = 27/337 (8%)

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQ+AQ  +G+SL +AD+LRRAMGKK    M + +  FI G+ + G +   A  +F+++ K
Sbjct: 1    MQVAQRFAGFSLGKADILRRAMGKKDVSAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEK 60

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA YGFN+SHA AY+ +++Q A+ KTHYP  F    +     +      +  DA +   +
Sbjct: 61   FAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQIMLNSANSD------YLIDALEAGFE 114

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            + P S+NT     K+ +  IY  L +IKGV    A  I+E   ++P+ ++EDF +++   
Sbjct: 115  VAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDLALWIIE---NRPYSNIEDFIAKLPEN 171

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
             L   +LE LV  G  D F  +R ++  +L N+ ++ +        +  ++F     ++ 
Sbjct: 172  YLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFEFVK--------ELGSLFGDAIYSWQ 223

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
            +              +F  EQ +LG   S HPL      +    I            +  
Sbjct: 224  ES------EDWTEQEKFYMEQELLGIGVSKHPLQ----AIASKAIYPITPIGNLSENSYA 273

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   V   +  +T+KG  + ++   +  K+ +   F
Sbjct: 274  IILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVTLF 310


>gi|289759528|ref|ZP_06518906.1| DNA polymerase subunit III (alpha) dnaE2 [Mycobacterium
           tuberculosis T85]
 gi|289715092|gb|EFD79104.1| DNA polymerase subunit III (alpha) dnaE2 [Mycobacterium
           tuberculosis T85]
          Length = 325

 Score =  261 bits (666), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 101/333 (30%), Positives = 160/333 (48%), Gaps = 13/333 (3%)

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNL 186
             R     L E       +LTG   G + +A        A++ L      F   R+ + L
Sbjct: 1   KPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIEL 60

Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKD 244
             H    D  R + +  LA    + +VAT  + F           + A+    ++ S   
Sbjct: 61  THHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAAG 120

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                   +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +     
Sbjct: 121 WLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDG---- 176

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             E++ LR+  +AG   R      A   ++     +++ EL VIA+++F GYFL+V D  
Sbjct: 177 HTEDSWLRSLVMAGARERYGPPKSAPRAYS-----QIEHELKVIAQLRFPGYFLVVHDIT 231

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           ++ + N+I +  GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID   
Sbjct: 232 RFCRDNDI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIES 290

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
           D+R++VI+YV +KYG +  AQ+    + + ++A
Sbjct: 291 DQREKVIQYVYHKYGRDYAAQVANVITYRGRSA 323


>gi|309805699|ref|ZP_07699739.1| DNA polymerase III subunit alpha domain protein [Lactobacillus iners
            LactinV 09V1-c]
 gi|308164952|gb|EFO67195.1| DNA polymerase III subunit alpha domain protein [Lactobacillus iners
            LactinV 09V1-c]
          Length = 393

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 106/364 (29%), Positives = 185/364 (50%), Gaps = 17/364 (4%)

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   EM K   
Sbjct: 1    MVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSMEMKKIGV 60

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++ A + G S   A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP +F  A
Sbjct: 61   DFVNRAVQQGHSAAAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQFYVA 120

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY-SLAAIKGVGTTT 849
             +   + + +K+ K+  D +  NI+I  P +N    +F + D       L +I G+    
Sbjct: 121  LLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSIIGLRMDF 180

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               IM     +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL S +++ 
Sbjct: 181  VEQIMN--LQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLASYEDLL 238

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 +    +  +  +F   +    D        + +++ + E E  VLGF     P+ 
Sbjct: 239  -----ICIKMSGGNNVLFQALEPKELD------IKMPSNAQKEEWETSVLGFSPQIDPIL 287

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K G K + +      G ++     ++  +   T+   ++ +  F++  +  + 
Sbjct: 288  AAQIYAKKYGFKPFSDFTFYDEGVSV---GKMMDIKVITTKNNKKMAFAKFNDLHETVDF 344

Query: 1030 NFFP 1033
              FP
Sbjct: 345  VIFP 348


>gi|319937868|ref|ZP_08012268.1| hypothetical protein HMPREF9488_03104 [Coprobacillus sp. 29_1]
 gi|319806774|gb|EFW03413.1| hypothetical protein HMPREF9488_03104 [Coprobacillus sp. 29_1]
          Length = 454

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 132/458 (28%), Positives = 196/458 (42%), Gaps = 58/458 (12%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL V S +SL+ G   ++N+L+K A  +  A+AITD N + +  +F Q A     +  
Sbjct: 2   FIHLNVKSCFSLMNGFNKIDNVLEKTARMKSNAVAITDINTMHTFYDFEQAALKKTKKTK 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSV 129
              +  I     +    + +       +I LL     GYQ LI L +      +Q     
Sbjct: 62  SLKRDSIHPIFGITFIVKARYVENEFFNITLLAKNEIGYQHLIALSTIANTNHEQFAY-- 119

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            +    L+    EGL  L+GG  G +      +    A   L   K  FG+ LY+ +  H
Sbjct: 120 -LTFEDLKH-HGEGLFCLSGGEEGEVFDLVVNDRIDEAVMLLKDLKAFFGENLYLEVSNH 177

Query: 190 --RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV----------LMAVAHS 237
             +  +++ ES +++ A +  +  VATNN+ +L +ED +   +          L A    
Sbjct: 178 FMKEEEKFIESGIIEKALSIGIDYVATNNAYYLRKEDAQYRSLAVSMNSELNSLKANEVD 237

Query: 238 TVVSQKDRP-RVTPDHYLKNRSEMVSIFS----DLPEALENTVEIARRCSFILQVHAPIL 292
            + +   R      + YLK   EM   FS      P  LENT++IA  C   +       
Sbjct: 238 WIHNYASRHVDFNSEWYLKTEVEMTKAFSKYLLKYPNLLENTLKIANACQATVPKLQ-TF 296

Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG-AIAKGYHAQDYRQRLDFELNVIARM 351
           P F   +       EE+  R   + G E R     A    +  QDY  R+++E   +  M
Sbjct: 297 PEFPLPQG----YTEESYFRELMLKGFEERFPDDSAFDPRFTRQDYIDRMEYEFETVKEM 352

Query: 352 KFSGYFLIVADFIQWAKKN------------------------------NIPVGPGRGSG 381
            F GY LIV D+I +AK                                 I VGPGRGSG
Sbjct: 353 GFLGYLLIVQDYINFAKDEKVFKHPERYFPRNCYPEYSRIPEGILKKNYKIAVGPGRGSG 412

Query: 382 AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           AGS+  Y L IT+++PL   LLFERFLN +R+SMP   
Sbjct: 413 AGSLLCYLLKITNLEPLSLDLLFERFLNIERVSMPKLV 450


>gi|309807104|ref|ZP_07701083.1| DNA polymerase III subunit alpha domain protein [Lactobacillus iners
            LactinV 03V1-b]
 gi|308166534|gb|EFO68734.1| DNA polymerase III subunit alpha domain protein [Lactobacillus iners
            LactinV 03V1-b]
          Length = 393

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 107/364 (29%), Positives = 185/364 (50%), Gaps = 17/364 (4%)

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   EM K   
Sbjct: 1    MVYPDPVLINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSIEMKKIGV 60

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++ A K G S + A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP +F  A
Sbjct: 61   DFVNRAVKQGHSASAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQFYVA 120

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY-SLAAIKGVGTTT 849
             +   + + +K+ K+  D +  NI+I  P +N    +F + D       L +I G+    
Sbjct: 121  LLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSIIGLRMDF 180

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               IM     +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL S  ++ 
Sbjct: 181  VEQIMN--LQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLASYKDLL 238

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 +    +  +  +F   +    D        + +++ + E E  VLGF     P+ 
Sbjct: 239  -----ICIKMSGGNNVLFQALEPKELD------IKMPSNAQKEEWETSVLGFSPQIDPIL 287

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K G K + +      G ++     ++  +   T+   ++ +  F++  +  + 
Sbjct: 288  AAQIYAKKYGFKPFSDFTFYDEGVSV---GKMMDIKVITTKNNKKMAFAKFNDLHETVDF 344

Query: 1030 NFFP 1033
              FP
Sbjct: 345  VIFP 348


>gi|301646509|ref|ZP_07246383.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            146-1]
 gi|301075262|gb|EFK90068.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            146-1]
          Length = 382

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 82/253 (32%), Positives = 123/253 (48%), Gaps = 4/253 (1%)

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAI 842
            P EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AI
Sbjct: 1    PAEFMAAGMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 60

Query: 843  KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L
Sbjct: 61   KGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 120

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            + SL +  K A    K       ++F    +     + +          V  + E+  LG
Sbjct: 121  MNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLG 180

Query: 961  FYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T
Sbjct: 181  LYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICT 240

Query: 1020 FSEPAKEYEANFF 1032
              + +   E   F
Sbjct: 241  LDDRSGRLEVMLF 253


>gi|28557086|dbj|BAC57546.1| DNA polymerase III alpha-chain [Clostridium novyi]
          Length = 245

 Score =  258 bits (659), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 133/249 (53%), Gaps = 6/249 (2%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           K   FVHL  H+ YSLL+G+  +  ++++       ++AITD   +F  ++F +KA  AG
Sbjct: 2   KGQKFVHLHTHTEYSLLDGSGKIGGLIERAKELGMDSLAITDHGTMFGCVDFYKKAKEAG 61

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I+PIIG ++ +  +    M  +          +VLLV    GY+ L+++VS+  + D   
Sbjct: 62  IKPIIGSEIYVASKS---MNIKRNDRENKNHHLVLLVKNEIGYKNLMKIVSKAAI-DGFY 117

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              R+   +L+E  +EGLI L+   +G +       + + A +  L +K +F D  Y+ L
Sbjct: 118 YKPRVDHEYLRE-HSEGLIALSACLAGEVSYNLLNGTKEKAREVALFYKDIFKDGFYLEL 176

Query: 187 QRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           Q H    + R ++ +++L+   ++PLVATN+  ++ +ED ++HDVL+ +     +   DR
Sbjct: 177 QYHGIDKQLRVNEMLIELSRELDIPLVATNDVHYIKKEDAKSHDVLLCIQTGKTLDDTDR 236

Query: 246 PRVTPDHYL 254
            R  P ++ 
Sbjct: 237 MRYEPQNFY 245


>gi|118479038|ref|YP_896189.1| DNA polymerase III, subunit alpha [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044620|ref|ZP_03111855.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225865797|ref|YP_002751175.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|229186055|ref|ZP_04313225.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
 gi|118418263|gb|ABK86682.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|196024655|gb|EDX63327.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225789817|gb|ACO30034.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|228597474|gb|EEK55124.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
 gi|324327712|gb|ADY22972.1| DNA polymerase III subunit alpha, Gram-positive type [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 483

 Score =  254 bits (648), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 99/531 (18%), Positives = 175/531 (32%), Gaps = 127/531 (23%)

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           + F  + +     Y +  +G + V +  T G++  K A   V               K  
Sbjct: 15  LYFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEKTAYGYV---------------KGY 59

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR-- 537
            ND    +                 +  +DRL+       G+ R    H  GI++     
Sbjct: 60  ANDHNLTI----------------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYM 100

Query: 538 PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
            +    P+     S   +   T F+   I    L+K D LG    T+++   D       
Sbjct: 101 DIFDFSPIQYPADSIGAEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----S 154

Query: 595 KVDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +D   IP DD E   +                  GTLGI +  +  +RQ LE  +P   
Sbjct: 155 GIDPKTIPTDDPEVMKIFSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTF 214

Query: 641 EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---Q 697
            +++ +  L     +                 + + LI         VI  ++ +M    
Sbjct: 215 SELVQISGLSHGTDVWLG--------------NANELIYNGTCTLSEVIGCRDDIMVYLI 260

Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
              L    +    + +R+   K + EE ++             +        +    K  
Sbjct: 261 YQGLDPSLAFKIMESVRKG--KGVPEEWEE------------DMKSNNVPGWYIDSCKKI 306

Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD 808
            Y F K+HAAAY +++ + A+ K H+ + F AA  T+  D+ +          I+    +
Sbjct: 307 KYMFPKAHAAAYVLMAVRIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDE 366

Query: 809 ARQFNIQIMPPS-------------------------VNTPCVDFKVGDNRIYYSLAAIK 843
             Q  +   P                             +   DF +  + +     A+ 
Sbjct: 367 IAQKGLDAAPKEKSLLTVLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVP 426

Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
           G+GT  A  I+EA  +  F S ED   R    K+++ ++E L   G L   
Sbjct: 427 GLGTNAALSIVEARKNGEFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 474


>gi|42782906|ref|NP_980153.1| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987]
 gi|42738833|gb|AAS42761.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus ATCC 10987]
          Length = 483

 Score =  253 bits (647), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 99/531 (18%), Positives = 175/531 (32%), Gaps = 127/531 (23%)

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           + F  + +     Y +  +G + V +  T G++  K A   V               K  
Sbjct: 15  LYFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEKTAYGYV---------------KGY 59

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR-- 537
            ND    +                 +  +DRL+       G+ R    H  GI++     
Sbjct: 60  ANDHNLTI----------------RNAEIDRLVA---GCTGVKRTTGQHPGGIIVVPDYM 100

Query: 538 PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
            +    P+     S   +   T F+   I    L+K D LG    T+++   D       
Sbjct: 101 DIFDFSPIQYPADSIGAEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDL-----S 154

Query: 595 KVDLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +D   IP DD E   +                  GTLGI +  +  +RQ LE  +P   
Sbjct: 155 GIDPKTIPTDDPEVMKIFSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTF 214

Query: 641 EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM---Q 697
            +++ +  L     +                 + + LI         VI  ++ +M    
Sbjct: 215 SELVQISGLSHGTDVWLG--------------NANELIYNGTCTLSEVIGCRDDIMVYLI 260

Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
              L    +    + +R+   K + EE ++             +        +    K  
Sbjct: 261 YQGLDPSLAFKIMESVRKG--KGVPEEWEE------------DMKNNNVPGWYIDSCKKI 306

Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFCQD 808
            Y F K+HAAAY +++ + A+ K H+ + F AA  T+  D+ +          I+    +
Sbjct: 307 KYMFPKAHAAAYVLMAVRIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDE 366

Query: 809 ARQFNIQIMPPS-------------------------VNTPCVDFKVGDNRIYYSLAAIK 843
             Q  +   P                             +   DF +  + +     A+ 
Sbjct: 367 IAQKGLDAAPKEKSLLTVLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVP 426

Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
           G+GT  A  I+EA  +  F S ED   R    K+++ ++E L   G L   
Sbjct: 427 GLGTNAALSIVEARKNGEFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 474


>gi|227546868|ref|ZP_03976917.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227212830|gb|EEI80711.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 676

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 108/483 (22%), Positives = 200/483 (41%), Gaps = 50/483 (10%)

Query: 171 LLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
               + +F  D  ++ +  H    +    + +V+LA     PLVAT++  +   +D   H
Sbjct: 2   AGELQDIFGRDNFFIEIMDHGLSIEHQIRNDLVELAKRINAPLVATSDVHYAKRDDSLKH 61

Query: 229 DVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS--FIL 285
           DV + +    V+    R +  + ++YL++ + M S+FSD+PEA +NT+ IA RC   F +
Sbjct: 62  DVRICIETGDVMDGPHRFKFESEEYYLRSSAVMRSLFSDVPEACDNTLLIAERCDTGFCV 121

Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                ++P+ +  +     +     L+ +    L+ +        G        R   E+
Sbjct: 122 AEDGSLMPQHVGADG----RASSEILQGEVEGWLQTKY-------GSIPDSVWNRAQHEM 170

Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            VI       Y + VA      ++    VGPG+G  A S+ AYAL I++IDP+ + L F 
Sbjct: 171 AVIRETHAEEYLMAVAYCTNRLREEGHLVGPGKGILARSLVAYALGISEIDPIEYDLPFT 230

Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            F +      P   +   +     V++Y+ ++YG+   A +I +       A++DV    
Sbjct: 231 DFQD---SVFPTAVLQTERGLSRRVLQYLCDRYGNGYAAAVIAYSRFNDAKAVKDVSHVC 287

Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
                      +   +  +  V LQ  A  S                 I+  L+      
Sbjct: 288 GY---------QRFWDASSAEVWLQDNAKKS-----------------IADGLKDCIYDC 321

Query: 526 STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
           S  +  + + ++PL+++  + R   S    T F+ K  ++ GL +    G + L ++Q +
Sbjct: 322 SVRSDVLALCNKPLAEVTSIVRFP-SGAESTAFDAKGCDELGLPRLRIAGSRVLQVVQDA 380

Query: 586 LDFLAQRGVKVDLSLIP--FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
           L F+    V           D+   Y LL+   T GI  L+  GM+  L   +     ++
Sbjct: 381 LRFIPDCNVPQVWDDSCSSLDESRVYDLLSAGYTAGIPFLD--GMKSELMQQKLTSFAEL 438

Query: 644 IAL 646
           I +
Sbjct: 439 IDI 441



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 76/198 (38%), Gaps = 17/198 (8%)

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVE--KIKKFCQDARQFNIQIMPPSVNTPCV-- 826
           + +Y+ A++KT Y +EF+ A +    ++    K++   ++     I +  P++N      
Sbjct: 457 MFAYRVAYVKTLYTIEFMTAMLNSYNEDGARAKLESIFEEMYCLGIHVRMPNINQSQYYA 516

Query: 827 -------DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878
                  D +     I     AI+G+    A  I+        + S  DF  RV  +  N
Sbjct: 517 TAYSSTGDDEKSAYGIQLGFNAIRGISEQLAEEIVSTRNKGSAYRSFNDFIRRVSLEHCN 576

Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHEKGT 933
              +  L+ AGA DC    R  L Q  +++ +  +     +++   ++      A     
Sbjct: 577 AGNVNYLIRAGAFDCVNPCRKALAQCGNDLIEAERQYRAAQSHGQGDLLQDVMDASPCAQ 636

Query: 934 FSDKITLEKFSVENSSVR 951
            S    +   S  + + R
Sbjct: 637 KSTDEVVPNGSDWDQTTR 654


>gi|291516124|emb|CBK69740.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
           longum F8]
          Length = 676

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 110/483 (22%), Positives = 202/483 (41%), Gaps = 50/483 (10%)

Query: 171 LLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
               + +F  D  ++ +  H    +    + +V+LA     PLVAT++  +   +D   H
Sbjct: 2   AGELQDIFGRDNFFIEIMDHGLSIEHQIRNDLVELAKRINAPLVATSDVHYAKRDDSLKH 61

Query: 229 DVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS--FIL 285
           DV + +    V+    R +  + ++YL++ + M S+FSD+PEA +NT+ IA RC   F +
Sbjct: 62  DVRICIETGDVMDGPHRFKFESEEYYLRSSAVMRSLFSDVPEACDNTLLIAERCDTGFCV 121

Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                ++P+ +  +     +     L+ +    L+ +        G        R   E+
Sbjct: 122 AEDGSLMPQHVGADG----RASSEILQGEVEGWLQTKY-------GSIPDSVWNRAQHEM 170

Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            VI       Y + VA      ++    VGPG+G  A S+ AYAL I++IDP+ + L F 
Sbjct: 171 AVIRETHAEEYLMAVAYCTNRLREEGHLVGPGKGILARSLVAYALGISEIDPIEYDLPFT 230

Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            F +      P   +   +     V++Y+ ++YG+   A +I +       A++DV    
Sbjct: 231 DFQD---SVFPTAVLQTERGLSRRVLQYLCDRYGNGYAAAVIAYSRFNDAKAVKDVSHVC 287

Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
                      +   +  +  V LQ  A  S                 I+  L+      
Sbjct: 288 GY---------QRFWDASSAEVWLQDNAKKS-----------------IADGLKDCIYDC 321

Query: 526 STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
           S  +  + + ++PL+++  + R   S    T F+ K  ++ GL +    G + L ++Q +
Sbjct: 322 SVRSDVLALCNKPLAEVTSIVRFP-SGAESTAFDAKGCDELGLPRLRIAGSRVLQVVQDA 380

Query: 586 LDFLAQRGVK--VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
           L F+    V    D S    D+   Y LL+   T GI  L+  GM+  L   +     ++
Sbjct: 381 LRFIPDCNVPQAWDDSCSSLDESRVYDLLSAGYTAGIPFLD--GMKSELMQQKLTSFAEL 438

Query: 644 IAL 646
           I +
Sbjct: 439 IDI 441



 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 76/198 (38%), Gaps = 17/198 (8%)

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVE--KIKKFCQDARQFNIQIMPPSVNTPCV-- 826
           + +Y+ A++KT Y +EF+ A +    ++    K++   ++     I +  P++N      
Sbjct: 457 MFAYRVAYVKTLYTIEFMTAMLNSYNEDGARAKLESIFEEIYCLGIHVRMPNINQSQYYA 516

Query: 827 -------DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878
                  D +     I     AI+G+    A  I+        + S  DF  RV  +  N
Sbjct: 517 TAYSSTGDDEKSAYGIQLGFNAIRGISEQLAEEIVSTRNKGSAYRSFNDFIRRVSLEHCN 576

Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHEKGT 933
              +  L+ AGA DC    R  L Q  +++ +  +     +++   ++      A     
Sbjct: 577 AGNVNYLIRAGAFDCVNPCRKALAQCGNDLIEAERQYRAAQSHGQGDLLQDVMDASPCAQ 636

Query: 934 FSDKITLEKFSVENSSVR 951
            S    +   S  + + R
Sbjct: 637 KSTDEVVPNGSDWDQTTR 654


>gi|297517314|ref|ZP_06935700.1| DNA polymerase III subunit alpha [Escherichia coli OP50]
          Length = 376

 Score =  252 bits (645), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 4/247 (1%)

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTT 848
            A MT +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIKGVG  
Sbjct: 1    AVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEG 60

Query: 849  TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +
Sbjct: 61   PIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGD 120

Query: 908  IQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
              K A    K       ++F    +     + +          V  + E+  LG Y +GH
Sbjct: 121  ALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGH 180

Query: 967  PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            P++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + + 
Sbjct: 181  PINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSG 240

Query: 1026 EYEANFF 1032
              E   F
Sbjct: 241  RLEVMLF 247


>gi|300900774|ref|ZP_07118920.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            198-1]
 gi|300355759|gb|EFJ71629.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            198-1]
          Length = 375

 Score =  252 bits (643), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/245 (31%), Positives = 117/245 (47%), Gaps = 4/245 (1%)

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTA 850
            MT +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIKGVG    
Sbjct: 2    MTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPI 61

Query: 851  RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  
Sbjct: 62   EAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDAL 121

Query: 910  KYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
            K A    K       ++F    +     + +          V  + E+  LG Y +GHP+
Sbjct: 122  KAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPI 181

Query: 969  DVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            + Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +   
Sbjct: 182  NQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRL 241

Query: 1028 EANFF 1032
            E   F
Sbjct: 242  EVMLF 246


>gi|224482500|gb|ACN50106.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  251 bits (642), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 96/302 (31%), Positives = 151/302 (50%), Gaps = 18/302 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++    LP F         +  E+ L  K+  GLE RL          
Sbjct: 230 SVEIAKRCNVTVRLGEYFLPNFPTG-----GEAIEDFLVMKSREGLEERLEFLFPDPEVR 284

Query: 334 AQ 335
           A+
Sbjct: 285 AK 286


>gi|224482470|gb|ACN50091.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  251 bits (642), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 96/302 (31%), Positives = 151/302 (50%), Gaps = 18/302 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++    LP F         +  E+ L  K+  GLE RL          
Sbjct: 230 SVEIAKRCNVTVRLGEYFLPNFPTG-----GEAIEDFLVMKSREGLEERLEFFFPDPEVR 284

Query: 334 AQ 335
           A+
Sbjct: 285 AK 286


>gi|330001696|ref|ZP_08304090.1| nucleic acid-binding domain protein [Klebsiella sp. MS 92-3]
 gi|328537572|gb|EGF63793.1| nucleic acid-binding domain protein [Klebsiella sp. MS 92-3]
          Length = 379

 Score =  251 bits (642), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 116/247 (46%), Gaps = 4/247 (1%)

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTT 848
              MT +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIKGVG  
Sbjct: 4    GVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEG 63

Query: 849  TARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                I+EA  +   F  L D C+R D KKLNRRVLE L+ +GA D  G  R  L+ SL +
Sbjct: 64   PIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGD 123

Query: 908  IQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
              K A    K       ++F    +     + +          V  + E+  LG Y +GH
Sbjct: 124  ALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGH 183

Query: 967  PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            P++ Y   + +  G    ++   T RG     A +V++ +   T++G+RIG  T  + + 
Sbjct: 184  PINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSG 243

Query: 1026 EYEANFF 1032
              E   F
Sbjct: 244  RLEVMLF 250


>gi|330721716|gb|EGG99713.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC2047]
          Length = 377

 Score =  251 bits (642), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 77/252 (30%), Positives = 123/252 (48%), Gaps = 9/252 (3%)

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVG 846
            +AA ++ +M N +K+    +D RQ  + I+ P VN     F V   +R+ Y L AIKG+G
Sbjct: 1    MAAVLSADMQNTDKVVILIEDCRQMELPIVLPDVNVSEYKFTVDLQDRVVYGLGAIKGLG 60

Query: 847  TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+EA      F  L DFC+RVD K++NRR LE+L+ +GA+D  G  R  L+   
Sbjct: 61   EGPVSAIIEARQQGGAFKDLFDFCARVDLKRVNRRALEALIRSGAMDKLGAHRAALMACQ 120

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-----LEKFSVENSSVRFENEQRVLG 960
            D   K A+   KN+     ++F    G+ + +         +       VR + E+  LG
Sbjct: 121  DEAVKVAEQHVKNQNAGMMDMFGDMPGSVATQDEDVYANYARIKPWTDKVRLQAEKETLG 180

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             Y  GHP+D Y+  LR +         A+      ++A +VV+ +  K+++G  I +VT 
Sbjct: 181  LYLQGHPIDEYEAELRNIAKDPLVALQASKNDQ--KIAGLVVALRTMKSKRGDTIAFVTL 238

Query: 1021 SEPAKEYEANFF 1032
             +     E + F
Sbjct: 239  DDRTSRMEVSVF 250


>gi|224482472|gb|ACN50092.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482476|gb|ACN50094.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482482|gb|ACN50097.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482494|gb|ACN50103.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482498|gb|ACN50105.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482508|gb|ACN50110.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482512|gb|ACN50112.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482514|gb|ACN50113.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  251 bits (640), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 96/302 (31%), Positives = 150/302 (49%), Gaps = 18/302 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++    LP F            E+ L  K+  GLE RL          
Sbjct: 230 SVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVR 284

Query: 334 AQ 335
           A+
Sbjct: 285 AK 286


>gi|224482480|gb|ACN50096.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482484|gb|ACN50098.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482496|gb|ACN50104.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  251 bits (640), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 96/302 (31%), Positives = 150/302 (49%), Gaps = 18/302 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++    LP F            E+ L  K+  GLE RL          
Sbjct: 230 SVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFFFPDPEVR 284

Query: 334 AQ 335
           A+
Sbjct: 285 AK 286


>gi|300990431|ref|ZP_07179199.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            200-1]
 gi|300305731|gb|EFJ60251.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            200-1]
          Length = 375

 Score =  251 bits (640), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 76/246 (30%), Positives = 116/246 (47%), Gaps = 4/246 (1%)

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTT 849
             M  +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIKGVG   
Sbjct: 1    LMPADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGP 60

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
               I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL + 
Sbjct: 61   IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 120

Query: 909  QKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
             K A    K       ++F    +     + +          V  + E+  LG Y +GHP
Sbjct: 121  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 180

Query: 968  LDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            ++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +  
Sbjct: 181  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 240

Query: 1027 YEANFF 1032
             E   F
Sbjct: 241  LEVMLF 246


>gi|19548812|gb|AAL90803.1| polymerase III subunit alpha [Escherichia coli]
          Length = 209

 Score =  250 bits (639), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 87/209 (41%), Positives = 136/209 (65%), Gaps = 12/209 (5%)

Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
             AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+  
Sbjct: 1   YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKS 60

Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTKG 616
            +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +L    
Sbjct: 61  DVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSE 120

Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI 674
           T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E+I   
Sbjct: 121 TTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYP 180

Query: 675 -----HPLIDPMLKETQGVIIYQEQVMQI 698
                H  + P+L+ T G+I+YQEQVMQI
Sbjct: 181 DVQWQHESLKPVLEPTYGIILYQEQVMQI 209


>gi|224482502|gb|ACN50107.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  250 bits (639), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 98/307 (31%), Positives = 152/307 (49%), Gaps = 23/307 (7%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++    LP F         K  E  L  K+  GLE RL        + 
Sbjct: 230 SVEIAKRCNVTVRLGEYFLPNFPTG-----GKAIEIFLVMKSREGLEERLEFL-----FP 279

Query: 334 AQDYRQR 340
             + R R
Sbjct: 280 DPEVRAR 286


>gi|301025930|ref|ZP_07189416.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            69-1]
 gi|300395785|gb|EFJ79323.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            69-1]
          Length = 376

 Score =  250 bits (638), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 116/247 (46%), Gaps = 4/247 (1%)

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTT 848
              M  +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIKGVG  
Sbjct: 1    GVMPADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEG 60

Query: 849  TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +
Sbjct: 61   PIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGD 120

Query: 908  IQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
              K A    K       ++F    +     + +          V  + E+  LG Y +GH
Sbjct: 121  ALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGH 180

Query: 967  PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            P++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + + 
Sbjct: 181  PINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSG 240

Query: 1026 EYEANFF 1032
              E   F
Sbjct: 241  RLEVMLF 247


>gi|224482520|gb|ACN50116.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  250 bits (638), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 96/302 (31%), Positives = 151/302 (50%), Gaps = 18/302 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++    LP F            E+ L  K+  GLE RL      +   
Sbjct: 230 SVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSRKGLEERLEFLFPDQEVR 284

Query: 334 AQ 335
           A+
Sbjct: 285 AK 286


>gi|224482516|gb|ACN50114.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  250 bits (638), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 94/302 (31%), Positives = 150/302 (49%), Gaps = 18/302 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++    LP F         +  E+ L  K+  G + RL          
Sbjct: 230 SVEIAKRCNVTVRLGEYFLPNFPTG-----GEAIEDFLVMKSREGWKERLKFLFPDPEVR 284

Query: 334 AQ 335
           A+
Sbjct: 285 AK 286


>gi|301330014|ref|ZP_07222701.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            78-1]
 gi|300843968|gb|EFK71728.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            78-1]
 gi|324008215|gb|EGB77434.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            57-2]
 gi|324014131|gb|EGB83350.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            60-1]
          Length = 374

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/245 (31%), Positives = 116/245 (47%), Gaps = 4/245 (1%)

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTA 850
            M  +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIKGVG    
Sbjct: 1    MPADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPI 60

Query: 851  RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  
Sbjct: 61   EAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDAL 120

Query: 910  KYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
            K A    K       ++F    +     + +          V  + E+  LG Y +GHP+
Sbjct: 121  KAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPI 180

Query: 969  DVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            + Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +   
Sbjct: 181  NQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRL 240

Query: 1028 EANFF 1032
            E   F
Sbjct: 241  EVMLF 245


>gi|300920130|ref|ZP_07136583.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            115-1]
 gi|300956069|ref|ZP_07168393.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            175-1]
 gi|300317063|gb|EFJ66847.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            175-1]
 gi|300412864|gb|EFJ96174.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            115-1]
          Length = 374

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 115/243 (47%), Gaps = 4/243 (1%)

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARH 852
             +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIKGVG      
Sbjct: 3    ADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEA 62

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K 
Sbjct: 63   IIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKA 122

Query: 912  AQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            A    K       ++F    +     + +          V  + E+  LG Y +GHP++ 
Sbjct: 123  ADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQ 182

Query: 971  YKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +   E 
Sbjct: 183  YLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEV 242

Query: 1030 NFF 1032
              F
Sbjct: 243  MLF 245


>gi|222832232|gb|EEE70709.1| predicted protein [Populus trichocarpa]
          Length = 283

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/248 (30%), Positives = 113/248 (45%), Gaps = 3/248 (1%)

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVG 846
            +AA MT EMDN +KI  F  +  +  + I+PP +NT    F V DN    Y + AIKGVG
Sbjct: 1    MAAVMTSEMDNTDKIVSFYDECLRMGLTIVPPDINTGKHHFSVNDNGEIVYGIGAIKGVG 60

Query: 847  TTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+ A      F  L D C+RVD KK+NRR  E+L+ +GA D  G  R  L Q+L
Sbjct: 61   EVPINAIVSAREQGGIFKDLFDLCARVDLKKVNRRTFENLIKSGAFDKLGPHRAALAQNL 120

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFS 964
            ++  K +    K+      ++F     +  D +         +     + E+  LG Y S
Sbjct: 121  EDALKASDQHAKDEAIGQVDMFGVLTSSHEDVETAYAHTPRWSEKQILDGERETLGLYLS 180

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+  Y   L         E     RG    +  ++V+ +   T+KG+R+G  T  + +
Sbjct: 181  SHPITRYLKELSHYSSTRLNELSPNTRGKISTVCGLIVALRFAVTKKGNRLGIATLDDRS 240

Query: 1025 KEYEANFF 1032
               +   F
Sbjct: 241  GLLDITLF 248


>gi|300932142|ref|ZP_07147425.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            187-1]
 gi|300460079|gb|EFK23572.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            187-1]
          Length = 378

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 115/243 (47%), Gaps = 4/243 (1%)

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARH 852
             +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIKGVG      
Sbjct: 7    ADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEA 66

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K 
Sbjct: 67   IIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKA 126

Query: 912  AQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            A    K       ++F    +     + +          V  + E+  LG Y +GHP++ 
Sbjct: 127  ADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQ 186

Query: 971  YKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +   E 
Sbjct: 187  YLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEV 246

Query: 1030 NFF 1032
              F
Sbjct: 247  MLF 249


>gi|309808826|ref|ZP_07702711.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
 gi|308167952|gb|EFO70085.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
          Length = 493

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/540 (17%), Positives = 183/540 (33%), Gaps = 121/540 (22%)

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
                 +PD D++F  D +     Y++  +G +   +  T G++  K A   V       
Sbjct: 12  GFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADKIAYGYV------- 64

Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
                                +   D++  +   L +  +DRL   SQ   G+ R    H
Sbjct: 65  ---------------------KHYEDENELK---LRNAELDRL---SQGASGVKRTTGQH 97

Query: 529 AAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
            AGIV+   D  +    P+             T F+   I    ++KFD LG    T+++
Sbjct: 98  PAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILKFDILGHDDPTMIR 156

Query: 584 KSLDFLAQRGVKVDLSLIPFDDHETYHLLT--------------TKGTLGIFQLESSGMR 629
              D        VD   IP  D     L +                GTLG+ +  +  +R
Sbjct: 157 MLQDLSG-----VDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTGTLGVPEFGTKFVR 211

Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             LE  +P    +++ +  L     +      +    G  K+ ++    D ++ +     
Sbjct: 212 GMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINKGICKLKNVIGCRDNIMTDLIHWD 271

Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
           +  E           +S  E+    + +  +    + K K                  + 
Sbjct: 272 VPPEVA---------FSTMESVRHGKGISDENMAILSKNKN---------------IPDW 307

Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------ 803
           +        Y F K+HA AY +++ + AW K +YPV +  + +++  D  + +       
Sbjct: 308 YIQSCLKIKYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRADLFDIVAMSHGKN 367

Query: 804 ---------------------------KFCQDARQFNIQIMPPSVNTP-CVDFKV-GDNR 834
                                      +   +  +  I I    +     ++FK+  ++ 
Sbjct: 368 TVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEKSDALNFKILDEHN 427

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
           I      + G+G   A+ I+ A  ++PF S ED   R    K+++ ++E     G LD  
Sbjct: 428 ILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTIMEYFENNGVLDGL 484


>gi|300949782|ref|ZP_07163757.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            116-1]
 gi|300450847|gb|EFK14467.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            116-1]
          Length = 373

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 115/243 (47%), Gaps = 4/243 (1%)

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARH 852
             +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIKGVG      
Sbjct: 2    ADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEA 61

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K 
Sbjct: 62   IIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKA 121

Query: 912  AQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            A    K       ++F    +     + +          V  + E+  LG Y +GHP++ 
Sbjct: 122  ADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQ 181

Query: 971  YKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +   E 
Sbjct: 182  YLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEV 241

Query: 1030 NFF 1032
              F
Sbjct: 242  MLF 244


>gi|224482486|gb|ACN50099.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482490|gb|ACN50101.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/302 (31%), Positives = 149/302 (49%), Gaps = 18/302 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++    LP F            E  L  K+  GLE RL          
Sbjct: 230 SVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEIFLVMKSREGLEERLEFLFPDPEVR 284

Query: 334 AQ 335
           A+
Sbjct: 285 AK 286


>gi|224482504|gb|ACN50108.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  249 bits (635), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 95/291 (32%), Positives = 147/291 (50%), Gaps = 18/291 (6%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
           +VEIA+RC+  +++    LP F            E  L  K+  GLE RL 
Sbjct: 230 SVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEIFLVMKSCEGLEERLE 275


>gi|315300656|gb|EFU59883.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            16-3]
          Length = 374

 Score =  249 bits (635), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 115/243 (47%), Gaps = 4/243 (1%)

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARH 852
             +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIKGVG      
Sbjct: 3    ADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEA 62

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K 
Sbjct: 63   IIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKA 122

Query: 912  AQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            A    K       ++F    +     + +          V  + E+  LG Y +GHP++ 
Sbjct: 123  ADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQ 182

Query: 971  YKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +   E 
Sbjct: 183  YLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEV 242

Query: 1030 NFF 1032
              F
Sbjct: 243  MLF 245


>gi|300938593|ref|ZP_07153325.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            21-1]
 gi|301028679|ref|ZP_07191899.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            196-1]
 gi|299878278|gb|EFI86489.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            196-1]
 gi|300456439|gb|EFK19932.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            21-1]
 gi|315285284|gb|EFU44729.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            110-3]
          Length = 372

 Score =  249 bits (635), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 115/243 (47%), Gaps = 4/243 (1%)

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARH 852
             +MDN EK+     +  +  ++I+PP +N+    F V D+    Y + AIKGVG      
Sbjct: 1    ADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEA 60

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K 
Sbjct: 61   IIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKA 120

Query: 912  AQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            A    K       ++F    +     + +          V  + E+  LG Y +GHP++ 
Sbjct: 121  ADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQ 180

Query: 971  YKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +   E 
Sbjct: 181  YLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEV 240

Query: 1030 NFF 1032
              F
Sbjct: 241  MLF 243


>gi|255657858|ref|ZP_05403267.1| putative DNA polymerase III, alpha subunit [Mitsuokella multacida
           DSM 20544]
 gi|260850046|gb|EEX70053.1| putative DNA polymerase III, alpha subunit [Mitsuokella multacida
           DSM 20544]
          Length = 765

 Score =  248 bits (633), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 88/396 (22%), Positives = 172/396 (43%), Gaps = 45/396 (11%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           ++ L  HS  SLL+G  ++  ++ +  +   PAI++TD   + + + F ++     I+PI
Sbjct: 2   YISLHNHSDGSLLDGYQTVQEMVARAKSLGMPAISLTDHGTMRNTIRFYEECQKNDIKPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +GC+       N++              +V+L    EGY  L +L +  Y  D      R
Sbjct: 62  VGCEFYFCPDVNIR-------DKSLTHHLVILAMNDEGYMNLKKLDTFAYNEDSYYYKPR 114

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I    L+E  ++GLI L+   +  +       +++  E+    +K+LFGDR Y  +Q   
Sbjct: 115 IDWEALRE-HSDGLICLSACMASIV-------NTENGEEWFEKYKELFGDRFYAEIQPLN 166

Query: 191 GYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              ++    +V+ LA  +++PLV T ++ +   ED   H   + +  +            
Sbjct: 167 LEKQWEYNDKVIGLARKYDVPLVVTTDAHYSIPEDKVYHSHWIRINGNQYHDD------- 219

Query: 250 PDHYLKNRSEMVSIFSDLP-----EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            ++Y+ +  E+ S    +P     E +ENT  IA  C+  +       P++         
Sbjct: 220 -ENYIWSDDEIRST-KWIPQDVIDECIENTEHIASLCNVTIPDSGSHYPKYPC------- 270

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              + ++R         R  +  + KG + ++Y +R + E+  +    +  Y LI+   +
Sbjct: 271 SNPKEKVREIC-----RRHWKELVPKGKY-KEYAERFEMEMKDLEATNYLEYLLIIWSVL 324

Query: 365 QWAKKNNIPVGPGRGS--GAGSVTAYALTITDIDPL 398
            W K+  IP+G GRG       V  +  T+ +I+ +
Sbjct: 325 SWCKEQRIPLGEGRGCSISGTKVLMWNGTVKNIEDI 360



 Score = 45.4 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
             +   F    D    A    +       S AG +  Y + I  IDP+++   F RF N 
Sbjct: 702 KGYVYDFTTDVDHSYIANNTVVH-----NSSAGCLVGYLMGIHKIDPIKYHTEFFRFCNR 756

Query: 411 DRMSMPD 417
           +R S  D
Sbjct: 757 ERRSPAD 763


>gi|224482468|gb|ACN50090.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  247 bits (632), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 95/302 (31%), Positives = 149/302 (49%), Gaps = 18/302 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++    LP F            E+ L  K+   LE RL          
Sbjct: 230 SVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSRERLEERLEFLFPDPEVR 284

Query: 334 AQ 335
           A+
Sbjct: 285 AK 286


>gi|224482510|gb|ACN50111.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  247 bits (631), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 94/302 (31%), Positives = 147/302 (48%), Gaps = 18/302 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++    LP F            E  L  K+  G E RL          
Sbjct: 230 SVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEIFLVMKSREGWEERLEFLFPDPEVR 284

Query: 334 AQ 335
            +
Sbjct: 285 GK 286


>gi|224482506|gb|ACN50109.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  247 bits (631), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 95/302 (31%), Positives = 148/302 (49%), Gaps = 18/302 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++    LP F            E  L  K+  G E RL          
Sbjct: 230 SVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEIFLVMKSREGWEERLEFLFPDPEVR 284

Query: 334 AQ 335
           A+
Sbjct: 285 AK 286


>gi|224482474|gb|ACN50093.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  247 bits (630), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 95/302 (31%), Positives = 148/302 (49%), Gaps = 18/302 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD   L   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTTLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++    LP F            E  L  K+  GLE RL          
Sbjct: 230 SVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEIFLVMKSREGLEERLEFLFPDPEVR 284

Query: 334 AQ 335
           A+
Sbjct: 285 AK 286


>gi|297580887|ref|ZP_06942812.1| DNA polymerase III [Vibrio cholerae RC385]
 gi|297534713|gb|EFH73549.1| DNA polymerase III [Vibrio cholerae RC385]
          Length = 353

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 110/224 (49%), Gaps = 3/224 (1%)

Query: 812  FNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFC 869
              + ++PP +N+    F V DN  I Y + AIKGVG      I+EA      F  L DFC
Sbjct: 1    MGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFC 60

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA- 928
            +R+D KK+N+RV+E L+ AGALD  G  R  ++ S+D+  + A    +       ++F  
Sbjct: 61   ARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGV 120

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
                    +    +       VR E E+  LG Y +GHP+D Y   L K       E+  
Sbjct: 121  LTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAP 180

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            T R  ++ +A +V++ +   T++G+RIG +T  + +   E   +
Sbjct: 181  TRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLY 224


>gi|224482488|gb|ACN50100.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 95/302 (31%), Positives = 150/302 (49%), Gaps = 18/302 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  +L   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTHLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++    LP F            E+ L  K+  GLE RL          
Sbjct: 230 SVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVR 284

Query: 334 AQ 335
           A+
Sbjct: 285 AK 286


>gi|255657859|ref|ZP_05403268.1| DNA polymerase III, alpha subunit [Mitsuokella multacida DSM 20544]
 gi|260850049|gb|EEX70056.1| DNA polymerase III, alpha subunit [Mitsuokella multacida DSM 20544]
          Length = 826

 Score =  246 bits (628), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 112/458 (24%), Positives = 197/458 (43%), Gaps = 56/458 (12%)

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ----AKAALRDVGRALQMPYSQVD 473
            D D     R  VI +V+  YG   V ++ T G  +      A    V +A Q  +++  
Sbjct: 2   VDSDLSTLNRGRVIEHVKEMYG--NVCKVQTLGYTKDPDKPSAGKEAVLKAWQALFNKYK 59

Query: 474 RLCKLIPNDPAHPVSLQ-AIADDSRFREAR-----------------LADPSVDRLLEIS 515
               +IP +    + +  +   + +F+                    L +     L++++
Sbjct: 60  DNAPMIPCEEQGGLMIDPSWEYNPKFKTEASKYVESSIDDLQDAPISLNEEQKAELIDVA 119

Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD--------LPVTQFNMKWIEKAG 567
           +   G       HA+ +++    L    P+     +D        +    ++   +E+ G
Sbjct: 120 KHFCGRIDKIGVHASAVLVTPDDLVNYTPVEGCYSNDTSTKKREYIRTACYSFHELEQRG 179

Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            +K D LGL TL L+ K + ++       +L  IP DD + Y + +     G+FQ+ES G
Sbjct: 180 NLKLDLLGLNTLDLIDKCMKYIGNDM---NLDDIPMDDVKAYEMYSNGNLDGVFQMESPG 236

Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
           MR+  + +   C +D+ ALV+LYRPGP+D+ ++  Y + KNG   +  +      + K T
Sbjct: 237 MRKVAKELHVSCFDDVAALVALYRPGPLDSGMMQQYIDGKNG-AAVDYLCDAYKEVTKNT 295

Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
            GVI+YQEQ M++A  ++GYSL EAD+LR+ +G+K   ++D   + FI+   K+G S  +
Sbjct: 296 FGVIVYQEQCMKLAMKMAGYSLGEADMLRKVIGRKEMTKIDAAVKEFITRCMKHGYSHEV 355

Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH----YPVEFLAASMTLE------ 795
           A  +   +     Y FNK  +    V+ +  A  K      Y           +      
Sbjct: 356 AEKVGMQIKAAGRYLFNKCLSGRECVVMHTGARTKRSIRELYRFFHDDKYNKRQLDPWNV 415

Query: 796 -------MDNVEKIKK-FCQDARQFNIQIMPPSVNTPC 825
                  MDN  K+ + +  D R+  I  +   V    
Sbjct: 416 NGVKACSMDNDGKMVENYIVDVRESGIMPVFILVTESG 453



 Score =  119 bits (298), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 116/290 (40%), Gaps = 55/290 (18%)

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
                SH+ AY  +SY+TA++K HYPV+F+ A +  + D  E I  +  + +   I+I+PP
Sbjct: 525  VVCNSHSVAYGRLSYKTAYLKAHYPVQFMCALLNTK-DKQEDILPYVANCKAMGIRILPP 583

Query: 820  SVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
            S+     +++ VG+N I   L  IKGVG               F+  E   +  D    N
Sbjct: 584  SLFEGNREWEIVGNNAIRVGLTYIKGVGKKLV-----TEKYGAFNDREMLTTWKDIVAYN 638

Query: 879  -RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE--KNRTNKHENIFAHEKGTFS 935
               V++SL+ AGALD    SR  ++ +L   Q++ + +   + R N + + + +      
Sbjct: 639  SSDVVKSLISAGALDFLKKSRGWMMGNLLETQRFTKRMAQCEERFNYYRDQYDNATNDKD 698

Query: 936  DKITLEKFSVENSS-------VRFE-------NEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                +   +  N          + E        E +VLGF FS  P      IL      
Sbjct: 699  KARAIRMANQWNDKINATILHEKPEVSFDNAAGEMKVLGFSFSSLP-----DILT----- 748

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS----EPAKEY 1027
                              +  S  +  T+ G+++  VTF     +     
Sbjct: 749  -----------------GIASSVHEITTKNGNKMALVTFKTDYGDFKGSI 781


>gi|257458196|ref|ZP_05623350.1| DNA polymerase III, alpha subunit family [Treponema vincentii ATCC
           35580]
 gi|257444490|gb|EEV19579.1| DNA polymerase III, alpha subunit family [Treponema vincentii ATCC
           35580]
          Length = 239

 Score =  246 bits (628), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 67/236 (28%), Positives = 116/236 (49%), Gaps = 4/236 (1%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FVHL VHS YSLL+GA S+  ++       Q A+A+TD  N+F+AL F ++  A GI+P
Sbjct: 4   DFVHLHVHSDYSLLDGASSIKKLISTAKNLGQTALALTDHGNMFAALRFFRECKAQGIKP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           +IGC++ +             T       ++LL  T  GY+ L+ L S+ Y         
Sbjct: 64  VIGCEVYVANGSRFGKPENTNTGVRKYFHLILLAETEIGYRNLMVLCSKGYTEGM-YYKP 122

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
           RI    L +  +EGLI L+   +G +           AE  +  ++ +F  +  ++ LQ+
Sbjct: 123 RIDEELLTQY-SEGLICLSACLAGELPSLLLQGKQAEAEAHVRRYRSIFGINNYFIELQK 181

Query: 189 HRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
           H   D  + +  ++++A    +P+V TN++ +  ++D  A D+L+ +     V   
Sbjct: 182 HGIADEEKAAPMLIEMARKLGVPMVVTNDAHYAEQKDAVAQDILLCIGTKKTVPTP 237


>gi|224482478|gb|ACN50095.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 95/302 (31%), Positives = 148/302 (49%), Gaps = 18/302 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++    LP F            E  L  K+   LE RL          
Sbjct: 230 SVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEIFLVMKSRERLEERLEFLFPDPEVR 284

Query: 334 AQ 335
           A+
Sbjct: 285 AK 286


>gi|224482518|gb|ACN50115.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  244 bits (624), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 145/288 (50%), Gaps = 18/288 (6%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
           +VEIA+RC+  +++    LP F            E+ L  K+   LE 
Sbjct: 230 SVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSRERLEE 272


>gi|324017839|gb|EGB87058.1| DNA polymerase III, alpha subunit [Escherichia coli MS 117-3]
          Length = 209

 Score =  243 bits (621), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 110/207 (53%), Positives = 152/207 (73%), Gaps = 7/207 (3%)

Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPG
Sbjct: 3   PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPG 62

Query: 654 PIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
           P+ + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+
Sbjct: 63  PLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYT 122

Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
           L  AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+
Sbjct: 123 LGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHS 182

Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMT 793
           AAYA++SYQT W+K HYP EF+AA MT
Sbjct: 183 AAYALVSYQTLWLKAHYPAEFMAAGMT 209


>gi|194246813|ref|YP_002004452.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
 gi|193807170|emb|CAP18609.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
          Length = 1449

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 155/911 (17%), Positives = 308/911 (33%), Gaps = 180/911 (19%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
            F     I LLV    G   L +L+S+  + +    +    +  +       L++    + 
Sbjct: 592  FIKPFRITLLVKNQIGLTTLYQLLSKAQITNFNSTTKLTFMDLIN--HRSNLLIGNTIND 649

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKL------FGDRLYVNLQRHRG-YDRYRESQVVQLAY 205
            G +       +    E  +  +  +          L +NL  +     +    ++++ A 
Sbjct: 650  GDLMEIALNENDFDLENAINFYDYITIQPITCYQHLMLNLGTNGSKIIQNAIKRIIKFAK 709

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMA---VAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
              +  ++AT N  +L  E  + + +      +A       K      P++     +EM+ 
Sbjct: 710  KAKKLIIATGNVFYLDHEQKKYYAIYTKTALIAKKLHPLVKCEFEDLPNNAFLTTTEMLK 769

Query: 263  IFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
            +F  L +   +E  V I             ILP+ +    D+             +  + 
Sbjct: 770  MFEFLNDSKLIEEIVIINPNLLNTKIASINILPQKLLTLADNELATSP-----LKINSIN 824

Query: 321  VRLAQGAIAK------GYHAQDYRQRLDFELNVIARM---KFS---GYFLIVADFIQWAK 368
              L Q  + K         + + +QR   E  +I       +      +L+    +Q + 
Sbjct: 825  QTLKQIILTKMITKYGENWSLELKQRFYQEFQIIINHQSPNYENITVMYLLAYLLVQKSL 884

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------------- 399
            ++   VG  RGS   S  AY + IT+++PL+                             
Sbjct: 885  QDGYLVG-SRGSIGSSFIAYLIGITEVNPLKPHYYCQNCLQTWFNVSELESTIECPRCDL 943

Query: 400  ------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
                   ++ FE FL  +    PD D++F    +++   Y+Q   G ++V ++ T  ++ 
Sbjct: 944  LLFKTGNNIPFEAFLGLNGNKTPDIDLNFASKYQEKAQNYLQFILGIKQVFKVSTIQTIS 1003

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             K A   V                           L+     +RF +  L          
Sbjct: 1004 NKTAFSYVYNY------------------------LKTQQIKARFHQINL---------- 1029

Query: 514  ISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLI 569
            IS++L G  R   TH++G++I  +   + Q+ P    + +        F     E   L 
Sbjct: 1030 ISKQLIGTKRTIGTHSSGLIIVPKNNSIYQIAPFQNSIHNSKIWQTISFEYHSFEN-NLS 1088

Query: 570  KFDFLGLKTLTLLQKSLDFLAQR---GVKVDLSLIPFDDHETYHLLTTK---------GT 617
            K D L  +  TL +   D++ Q        +   IP +D + + L T            T
Sbjct: 1089 KLDILSHENPTLFKMFFDYIKQHPKKFPFKNYHEIPINDSKVFQLFTQTFKNSQGITIST 1148

Query: 618  LGIFQLESSGMRQALEGM-----QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            LGI +  +  +R+ L  +     QP  +E +I +  L   G    +    +  N   +  
Sbjct: 1149 LGIPEFGTKFVRKMLVNIYQVENQPFNLEKLIKVSGLSH-GTNVWLNNGLDIINQTNEFQ 1207

Query: 673  SIHPLIDPMLKETQGVIIYQEQV---MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++     P+    + +I  +E +   + I Q+    +    + +R+    +   E     
Sbjct: 1208 NL-----PVKITFKDIIACREDIYNYLIINQVPKIKAFEIMEFVRKGKQHQNLTEWQTL- 1261

Query: 730  ERFISGASKNGISKTIAVNIFELLAKF-ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
                    +N I        +   + F   Y F K+HA+AY +++ + A+ K +YP+ F 
Sbjct: 1262 ----IKPYQNLIP------TWYWKSAFKIKYLFPKAHASAYTLMAIKIAYFKVYYPILFY 1311

Query: 789  AASMTLEMDNVE------------------------KIK----------KFCQDARQFNI 814
                + ++                            K+           +   + +Q N 
Sbjct: 1312 YGYFSQKITQFNYQLIIGSIKNLEQEIKTLNQIKQRKLTNLENESLITYELVLEFKQQNF 1371

Query: 815  QIMPPSVNTPCVD--FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            ++ P + N   ++    + +  +   L A+  +G   A  I++    K F    DF  R 
Sbjct: 1372 KLQPINWNYSAINEFLIINETTLLIPLTALNSLGIEKANLIIQQRQQKLFTDKTDFIKRT 1431

Query: 873  DSKKLNRRVLE 883
               K     LE
Sbjct: 1432 KISKTLISQLE 1442


>gi|300932140|ref|ZP_07147424.1| DNA polymerase III, alpha subunit [Escherichia coli MS 187-1]
 gi|300460097|gb|EFK23590.1| DNA polymerase III, alpha subunit [Escherichia coli MS 187-1]
          Length = 209

 Score =  241 bits (616), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 108/204 (52%), Positives = 150/204 (73%), Gaps = 7/204 (3%)

Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPG
Sbjct: 3   PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPG 62

Query: 654 PIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
           P+ + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+
Sbjct: 63  PLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYT 122

Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
           L  AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+
Sbjct: 123 LGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHS 182

Query: 767 AAYAVISYQTAWMKTHYPVEFLAA 790
           AAYA++SYQT W+K HYP EF+AA
Sbjct: 183 AAYALVSYQTLWLKAHYPAEFMAA 206


>gi|300920132|ref|ZP_07136584.1| DNA polymerase III, alpha subunit [Escherichia coli MS 115-1]
 gi|300412845|gb|EFJ96155.1| DNA polymerase III, alpha subunit [Escherichia coli MS 115-1]
          Length = 208

 Score =  241 bits (615), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 108/204 (52%), Positives = 150/204 (73%), Gaps = 7/204 (3%)

Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPG
Sbjct: 3   PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPG 62

Query: 654 PIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
           P+ + +   + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+
Sbjct: 63  PLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYT 122

Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
           L  AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+
Sbjct: 123 LGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHS 182

Query: 767 AAYAVISYQTAWMKTHYPVEFLAA 790
           AAYA++SYQT W+K HYP EF+AA
Sbjct: 183 AAYALVSYQTLWLKAHYPAEFMAA 206


>gi|224482492|gb|ACN50102.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  241 bits (615), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 93/302 (30%), Positives = 147/302 (48%), Gaps = 18/302 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD   L   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTILCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++    LP F            E  L  K+  G + RL          
Sbjct: 230 SVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEIFLVMKSREGSQERLEFLFPDPEVR 284

Query: 334 AQ 335
           A+
Sbjct: 285 AK 286


>gi|330982627|gb|EGH80730.1| error-prone DNA polymerase [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 325

 Score =  241 bits (614), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 81/362 (22%), Positives = 143/362 (39%), Gaps = 40/362 (11%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +  +  L   S++S   GA S   + ++       A+AITD   L   +   Q + + G+
Sbjct: 2   TSEYAELHCLSNFSFQRGASSARELFERAVRHGYKALAITDECTLAGIVRAWQASKSTGL 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             I+G ++ I+                  P +VLLV    GY+ L  L++      + K 
Sbjct: 62  PLIVGSEMHIENG----------------PKVVLLVENQAGYEALCTLITVARRRAK-KG 104

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             R+      E   +GL+ L         +A                ++ F +RL++ + 
Sbjct: 105 EYRVLREDF-EPAPDGLLALWLPDLDGDAQACLAGG--------RWLRERFTERLWLGVG 155

Query: 188 RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            HRG  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V++    
Sbjct: 156 LHRGPDDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEAGHL 215

Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                + +L+    +   + D    L  +V IARRC+F L       P  +  +     +
Sbjct: 216 LFANGERHLRPLDALSEHYPDW--LLAESVRIARRCTFDLGDLKYEYPHELVPKG----Q 269

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + LR     G+  R   G           R +++ EL +IA  KF  YFL V D ++
Sbjct: 270 TSTSWLRELTERGVRRRWPGGLTPAT------RAQVEKELALIAEKKFDSYFLTVHDIVE 323

Query: 366 WA 367
           +A
Sbjct: 324 FA 325


>gi|330686382|gb|EGG97983.1| nucleic acid-binding domain protein [Staphylococcus epidermidis
            VCU121]
          Length = 393

 Score =  239 bits (610), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 139/288 (48%), Gaps = 15/288 (5%)

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  ++  + + +K     
Sbjct: 3    KQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPNYFYANILSNVIGSEKKTAAMI 62

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865
             +A+  +I I+PP++N     +K   + IY SL AIKG G  + + I++    +  F   
Sbjct: 63   DEAKHQSITILPPNINESHWFYKATSDGIYLSLGAIKGAGYQSVKLIVDERYQNGDFKDF 122

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DF  R+  +   R++LESL+  GA D FG +R  LL S+D +      +E++     + 
Sbjct: 123  FDFARRLPKRVKTRKLLESLILVGAFDIFGKNRATLLHSIDQVIDQVTDIEQD-----DM 177

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            +F      F+ K + E+       +  E E+  LGFY S HP++       K       +
Sbjct: 178  LFDF----FTPKQSYEEKEELPDQLISEYEKEYLGFYISKHPVE---KEFNKKQYLTIYK 230

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                     I +       ++ +T+ G  + +VT ++     +   FP
Sbjct: 231  LSNAKNHQPILV--QFDQIKRIRTKNGQNMAFVTLNDGIHLLDGVIFP 276


>gi|330859614|emb|CBX69954.1| hypothetical protein YEW_DO15370 [Yersinia enterocolitica W22703]
          Length = 234

 Score =  238 bits (607), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 117/239 (48%), Gaps = 12/239 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A +AG++
Sbjct: 4   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHSAGVK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PIIG    +          Q +     +  + +L    +GYQ L  L+S  Y    G   
Sbjct: 64  PIIGADFYV----------QSEILGDELAHLTVLARNNKGYQNLTLLISEAYQRGYGAAG 113

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I   WL +   EGLI+L+GG  G + +     +    E+ L  +++ F D  Y+ L R
Sbjct: 114 PIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHAQVEQCLEFYQEHFPDSYYLELIR 172

Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
               D        V LA    LP+VATN+  F+ E D++AH++ +A+     +    RP
Sbjct: 173 TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRP 231


>gi|75758946|ref|ZP_00739056.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228904735|ref|ZP_04068789.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
 gi|74493547|gb|EAO56653.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228854749|gb|EEM99353.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
          Length = 511

 Score =  238 bits (607), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 96/360 (26%), Positives = 163/360 (45%), Gaps = 16/360 (4%)

Query: 56  LEFSQKACA---AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
           +EF  K      A    +                 +     P +  ++++    EGY+ L
Sbjct: 135 VEFLAKLNEKDPAAFDALKKSTRWYLSGKQDDKQKRLFEWSPRIAHLLMIAKNNEGYKNL 194

Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
           I+L +   +        R     +++ G +G+I  +    G I +       +VA+  + 
Sbjct: 195 IKLTTIGSVEG-FYGKPRFDYGDIKKYG-KGIIATSSCLGGTIPQLIRRGKFRVAKNHIK 252

Query: 173 TFKKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            +KK F D  Y+ +Q     ++    + +++ +   ++PLVAT+++  L  ED   H  +
Sbjct: 253 FYKKCF-DEFYLEIQPSTMQEQILVNNILIEWSKELDVPLVATSDAHMLRPEDRPVHKAI 311

Query: 232 MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
            ++       + D           +  EM+++     EAL N   IA  C   L   +  
Sbjct: 312 TSINKGKDEDESDIDVYEH-CVFYSAEEMLAM-GMPEEALINAYNIAHSCHVDLDESSIK 369

Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ---RLDFELNVI 348
            P F   +  D     ++ L + +  GL  ++A+G        + YR+   RLD+EL VI
Sbjct: 370 YPEFEVPDDFDF----DSYLAHISNKGLMEKIAEGNFVGKNFYKMYRKYKRRLDYELEVI 425

Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
                S Y LIV D+I +AK+N+I VGPGRGS AGS+ AY   IT++DP+R++LLFER L
Sbjct: 426 KNKNISAYMLIVWDYINFAKRNDILVGPGRGSAAGSLVAYVTGITNLDPIRYNLLFERKL 485



 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 20/195 (10%)

Query: 1   LTQYLEKSPSFVHLQVHS-SYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
           +T    K   F HL +H+   SLL+G   ++ ++         +I ++D    F+ ++F 
Sbjct: 1   MTLTNNKIVPFAHLHLHTPEGSLLDGFCRIDPMIKLAQEFGMDSIGVSDHGTCFAHIQFY 60

Query: 60  QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
           +K  AAGI P++G +  I  +   K  +  +  +  V             + L +L S  
Sbjct: 61  KKCKAAGIHPVLGMEGYIAPRKQWKKADFDRINYTDVAYRTK--------EELAKLESEG 112

Query: 120 YLL---------DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
           Y+           +GK +    + +L ++  +              R +        +KR
Sbjct: 113 YIAFEKKQRDSFTKGKTTKPEHVEFLAKLNEKDPAAFDALKKS--TRWYLSGKQDDKQKR 170

Query: 171 LLTFKKLFGDRLYVN 185
           L  +       L + 
Sbjct: 171 LFEWSPRIAHLLMIA 185


>gi|227495220|ref|ZP_03925536.1| possible DNA-directed DNA polymerase [Actinomyces coleocanis DSM
           15436]
 gi|226831672|gb|EEH64055.1| possible DNA-directed DNA polymerase [Actinomyces coleocanis DSM
           15436]
          Length = 583

 Score =  237 bits (605), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 101/277 (36%), Positives = 156/277 (56%), Gaps = 9/277 (3%)

Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD------FLAQRGVKVDLSLIPFD 604
           S+    Q++ ++  +AGL+KF  LGL  LT L++         ++   G K+DL  +P +
Sbjct: 305 SEEIALQWDKEYCAEAGLVKFVLLGLGMLTALRRMFSALEKQGYVQADGRKLDLYSLPAE 364

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYN 662
           D +   LL    T+G+FQ+ES      L  ++P C  D++  V L RPGPI    +  Y 
Sbjct: 365 DPQVCDLLCADDTVGVFQVESRAQMNTLPRLRPRCFYDLVVEVVLIRPGPIQGNAVNPYL 424

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            R  GKE +  +  L+ P+L+ T GV  +QEQ+MQIA   +G+S +EAD LR+AMG K  
Sbjct: 425 RRCLGKEPVRYVDELLKPILERTLGVPFFQEQLMQIAVEAAGFSAAEADQLRKAMGSKRS 484

Query: 723 EE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
           EE M K K +  +G ++NGI    A  IFE  + FA++ F +SHA ++A I Y +AWMK 
Sbjct: 485 EERMRKLKPQLYAGLAQNGIVGERAEEIFEYFSGFAEFSFPESHAFSFAYIVYASAWMKV 544

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
           H+P EF A+ +  +      +     DA +  ++++P
Sbjct: 545 HFPHEFYASIIASQPMGFYSVYSLVADAHRRGVRVLP 581



 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 100/322 (31%), Positives = 152/322 (47%), Gaps = 11/322 (3%)

Query: 157 RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQL-AYTHELPLVATN 215
           +A      +  +++L    ++F  +L V        DR   SQ + L A   +LPLVAT 
Sbjct: 3   QALEAGGLEAGKRQLDFLSEVFSRKLAVESTLVTERDREYVSQQLGLLAKQADLPLVATT 62

Query: 216 NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +            VL A+     +SQ +         L++ ++MV I    PEA+ N  
Sbjct: 63  AARAADLRSLRKSHVLRAIQMQGSLSQVEPFLEAFLPILRSAADMVQIHKYHPEAVTNAA 122

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
           ++A   +F  ++ AP LP       +     E   LR  A  G ++R    A  +     
Sbjct: 123 QLAGEIAFDFRLLAPQLPVGQVSAGE----TETAWLRKCAYEGAKLRYDSRAENRKA--- 175

Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
              + +D EL +IA + F GYFLIV + + + K N+I +  GRGS A S   YAL IT +
Sbjct: 176 --WETIDHELKIIANLGFCGYFLIVKEIVDFCKANDI-LCQGRGSAANSAVCYALGITAV 232

Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
           D +   L+FERFL+PDR   PD DID    RR+EVI++V  KYG    AQ+    + + +
Sbjct: 233 DAVYHRLMFERFLSPDRSGPPDIDIDIEAKRREEVIQHVFEKYGRHNAAQVANVITYRHR 292

Query: 456 AALRDVGRALQMPYSQVDRLCK 477
           +A+RD  +A         +  K
Sbjct: 293 SAIRDAAKAFGFSEEIALQWDK 314


>gi|254416530|ref|ZP_05030282.1| hypothetical protein MC7420_2412 [Microcoleus chthonoplastes PCC
           7420]
 gi|196176734|gb|EDX71746.1| hypothetical protein MC7420_2412 [Microcoleus chthonoplastes PCC
           7420]
          Length = 230

 Score =  236 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 10/234 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+       AIA+TD   ++ A+E  +     GI+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPQLVDRAVELGMSAIALTDHGVMYGAIELIKVCRGKGIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD----QG 125
           IIG ++ +   D    T + +  +      V+L    +GY+ L++L +  +L        
Sbjct: 62  IIGNEMYVINGDIQDKTKKKQRKY----HQVVLAKNTQGYKNLVKLTTISHLKGIQGTGI 117

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            Q   I   +LQ+   +GLI+ +G   G + +A      Q A +    +K++FGD  Y+ 
Sbjct: 118 FQRPCINKEFLQQY-RDGLIVTSGCLGGEVPQAILKGDVQKARELAQWYKEVFGDDYYLE 176

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
           +Q H    DR    ++V++A   E+ +VATN+S F+S  D EAHD L+ + +  
Sbjct: 177 IQDHGSIEDRIVNVEIVKIARELEIKIVATNDSHFISCYDVEAHDALLCIQYGN 230


>gi|213610033|ref|ZP_03369859.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 239

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/249 (30%), Positives = 121/249 (48%), Gaps = 13/249 (5%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2   SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62  IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112 AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170

Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171 IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246 P-RVTPDHY 253
           P   +P  Y
Sbjct: 231 PRNYSPQQY 239


>gi|324017849|gb|EGB87068.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            117-3]
          Length = 358

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 4/229 (1%)

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865
            +  +  ++I+PP +N+    F V D+    Y + AIKGVG      I+EA      F  L
Sbjct: 1    ECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFREL 60

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A    K       +
Sbjct: 61   FDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQAD 120

Query: 926  IFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGY 983
            +F    +     + +          V  + E+  LG Y +GHP++ Y   + +  G    
Sbjct: 121  MFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRL 180

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++   T RG  I  A +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 181  KDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 229


>gi|312978244|ref|ZP_07789988.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus
           crispatus CTV-05]
 gi|310894962|gb|EFQ44032.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus
           crispatus CTV-05]
          Length = 471

 Score =  234 bits (597), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 89/529 (16%), Positives = 174/529 (32%), Gaps = 119/529 (22%)

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           + F  D +     +++  +G +   +  T  ++  K A                      
Sbjct: 1   MTFSGDYQPVAHNFIRVMFGPDNSYRAGTIATVADKTAYGYA------------------ 42

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP- 538
                     +   ++   +   L +  +DRL   +  + G+ R    H AGIV+     
Sbjct: 43  ----------KHYDEEHDLK---LRNAELDRL---AAGVRGVKRTTGQHPAGIVVVPDDM 86

Query: 539 -LSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
            +    P+     DV +   +T ++   I    ++KFD LG    T+++   D       
Sbjct: 87  DIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDPTMIRHLQDL-----S 140

Query: 595 KVDLSLIPFDDHETYHLLTT--------------KGTLGIFQLESSGMRQALEGMQPDCI 640
            +D   IP DD     L ++               GTLG+ +  +  +R  LE  +P   
Sbjct: 141 GIDPLTIPPDDPGVMSLFSSPDILGVTPEQIQSETGTLGVPEFGTRFVRGMLEETKPTTF 200

Query: 641 EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            +++ +  L     +      +    G  K+ ++    D ++ +     +  E       
Sbjct: 201 SELLQISGLSHGTDVWLGNAEDLINQGICKLKNVIGCRDNIMMDLIHWGVKPEVA----- 255

Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
               +S  E+    R +  +    +               I      +  ++      Y 
Sbjct: 256 ----FSTMESVRHGRGISDENMAIL----------KKNKNIPDWYIPSCLKI-----KYM 296

Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK----------------- 803
           F K+HA AY +++ + AW K +YP  +  A  ++  D  + +                  
Sbjct: 297 FPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFDLVAMSHGKNTVKAAMKEIQD 356

Query: 804 ----------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGV 845
                           +   +  +  I+I    ++     DFK+ D         A+ G+
Sbjct: 357 KGNDASAKDKSLMTVLEIANECLERGIKIKMVDIDQSEATDFKILDKHTILAPFNAVPGL 416

Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL-ESLVFAGALDC 893
           G   A+ I+ A A+K F S ED   R    +       E+ V  G  D 
Sbjct: 417 GDNAAKQIVAARAEKKFLSKEDLAKRGKVSQTIMNYFEENGVLEGMPDE 465


>gi|119632807|gb|ABL84408.1| DNA polymerase III alpha subunit [Streptococcus suis]
          Length = 236

 Score =  234 bits (596), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 79/238 (33%), Positives = 126/238 (52%), Gaps = 6/238 (2%)

Query: 436 NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
           ++YG    AQI+T+ +  AK A+RDV +    P  ++  + K I    +      A   +
Sbjct: 1   DRYGSTHAAQIVTYSTFGAKQAIRDVFKRFGTPEYELSNITKKISFRDSLT---SAYQRN 57

Query: 496 SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
           + FR+   +     +   I+Q++EG  R  S HAAGIV+ D  L+  +P+   +  D+ V
Sbjct: 58  AAFRQIINSKIEYQKAFAIAQQIEGQPRQTSIHAAGIVMSDEELTDTIPL--KIGDDMLV 115

Query: 556 TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTT 614
           TQ++   +E  GL+K DFLGL+ LT +QK  + + +R  + +D++ I  +D +T  L   
Sbjct: 116 TQYDAHAVEANGLLKMDFLGLRNLTFVQKMAEGVRERYQQEIDIAKIDLEDKKTLELFAA 175

Query: 615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
             T GIFQ E  G    L  ++P   EDI+A  SL RPG  D    +  RK+G+E + 
Sbjct: 176 GRTKGIFQFEQPGAISLLRRVKPGRFEDIVATTSLNRPGASDYSDNFVKRKHGQETVD 233


>gi|254838526|gb|ACT83411.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|254838528|gb|ACT83412.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|254838530|gb|ACT83413.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|254838532|gb|ACT83414.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|254838534|gb|ACT83415.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|254838536|gb|ACT83416.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 252

 Score =  232 bits (591), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 101/258 (39%), Positives = 148/258 (57%), Gaps = 11/258 (4%)

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L R   
Sbjct: 1   DKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGR 59

Query: 192 YDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVT 249
            D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    RP   +
Sbjct: 60  ADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYS 119

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
           P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F            E+
Sbjct: 120 PKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIED 174

Query: 310 ELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW
Sbjct: 175 FLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQW 234

Query: 367 AKKNNIPVGPGRGSGAGS 384
           +K N+IPVGPGRGSGAGS
Sbjct: 235 SKDNDIPVGPGRGSGAGS 252


>gi|37784572|gb|AAP47637.1| DnaE precursor [Aphanizomenon ovalisporum]
          Length = 259

 Score =  232 bits (591), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 13/226 (5%)

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T    + +K++K+  +     I 
Sbjct: 33  IASNCFNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTANSGDTDKVQKYINNCANMGIT 92

Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874
           I PP +N   +DF     +I + L+A++ VG      I+ A      F SL DFC  VD 
Sbjct: 93  IDPPDINRSGLDFTPAGGKILFGLSAVRNVGQNAIACILSARNEGGDFQSLADFCDGVDL 152

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-- 932
           + +NRR +ESL+  GA D    +R QL+  L+ +  +AQ   K+R +   N+F    G  
Sbjct: 153 RVVNRRTVESLIHCGAFDKIEANRKQLIHDLELVYDWAQSRAKDRASGQGNLFDLLGGSS 212

Query: 933 ----------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                     TF      +     +   +   E+ +LGFY S HPL
Sbjct: 213 ANTNHQIASSTFEAVPKAQPVPDFHPQEKLRMEKELLGFYVSDHPL 258


>gi|222873367|gb|EEF10498.1| predicted protein [Populus trichocarpa]
          Length = 388

 Score =  232 bits (591), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 114/319 (35%), Gaps = 35/319 (10%)

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                G  +  A   F  +  F +YGF +SHAA++A++ Y +AW K +YP  F AA +  +
Sbjct: 1    MEARGYPRAFAERCFRQIEGFGEYGFPESHAASFALLVYASAWFKAYYPDVFCAAILNSQ 60

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----------------------DN 833
                    +  +DAR+  ++I    +N+   D  +                       ++
Sbjct: 61   PMGFYAPAQLVRDAREHGVEIREVDINSSKWDCTLEEASFDPARVADRHAGMRSIIRTED 120

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +      +KG+       ++       + S+ D   R     L++ V+  L  A A   
Sbjct: 121  AVRLGFRQVKGLAEADMEQLVRNRGVG-YRSVRDLWLR---SGLSKSVIARLAEADAFRS 176

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
             G  R   L ++       Q +++ R      +    +    +     +      S+   
Sbjct: 177  LGLDRRTALWAV-------QALDETRAADRLPLLDRPEINLGEDEPEVRLPSMPLSMHVV 229

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            ++ + L      HP+   +  L    +   E       G  + +A +V+ +Q+  T K  
Sbjct: 230  HDYQSLSLSLKAHPVSFLRDQLAAEKVVPNERLQDLDNGRRVSVAGLVLIRQRPGTAKN- 288

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + ++T  +         +
Sbjct: 289  -VIFMTIEDETGIANIVVW 306


>gi|313835829|gb|EFS73543.1| PHP domain protein [Propionibacterium acnes HL037PA2]
          Length = 312

 Score =  230 bits (587), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 88/320 (27%), Positives = 140/320 (43%), Gaps = 14/320 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +  L  HSSYS L+GA S  +++ +        +A+TD + L+  +  ++ A   GI  
Sbjct: 3   PYAELHCHSSYSFLDGASSPEDLVTRAVELGLSGLALTDHDGLYGVVRMAEAAEVCGIPT 62

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128
           IIG +L I + +      Q     P    +++L +  EGY+RL E ++  YL + G K  
Sbjct: 63  IIGSELSIGIPE-----PQNGVADPVGSHLLVLANGPEGYRRLTEALTDAYLAEGGHKGH 117

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
               L  L E+      +LTG   G + R         AE  L     LF    + V L 
Sbjct: 118 PVHNLDHLAEVADGHWTVLTGCRKGAV-RQGLAKGMPQAEAELRRLVDLFGIGNVLVELT 176

Query: 188 RHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
            HR     R++ V+ +LA  H +  VAT  + +   E +E    L AV     + + D  
Sbjct: 177 DHRAPTDSRDNDVLAELASRHSVSTVATTAAHYAGAEQFELSCALSAVRARRSLDEMDGW 236

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               P   L++ +EM  +FS   +A++NTV +A + +F LQ   P LP     +      
Sbjct: 237 LPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAEKTAFHLQSVRPRLPEQKVPDG----H 292

Query: 306 EEENELRNKAVAGLEVRLAQ 325
              + LR+    G  V L +
Sbjct: 293 TPISWLRHLVEEGRRVLLRE 312


>gi|328905984|gb|EGG25759.1| error-prone DNA polymerase [Propionibacterium sp. P08]
          Length = 368

 Score =  230 bits (587), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 88/320 (27%), Positives = 140/320 (43%), Gaps = 14/320 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +  L  HSSYS L+GA S  +++ +        +A+TD + L+  +  ++ A   GI  
Sbjct: 59  PYAELHCHSSYSFLDGASSPEDLVTRAVELGLSGLALTDHDGLYGVVRMAEAAEVCGIPT 118

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128
           IIG +L I + +      Q     P    +++L +  EGY+RL E ++  YL + G K  
Sbjct: 119 IIGSELSIGIPE-----PQNGVADPVGSHLLVLANGPEGYRRLTEALTDAYLAEGGHKGH 173

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
               L  L E+      +LTG   G + R         AE  L     LF    + V L 
Sbjct: 174 PVHNLDHLAEVADGHWTVLTGCRKGAV-RQGLAKGMPQAEAELRRLVDLFGIGNVLVELT 232

Query: 188 RHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
            HR     R++ V+ +LA  H +  VAT  + +   E +E    L AV     + + D  
Sbjct: 233 DHRAPTDSRDNDVLAELASRHSVSTVATTAAHYAGAEQFELSCALSAVRARRSLDEMDGW 292

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               P   L++ +EM  +FS   +A++NTV +A + +F LQ   P LP     +      
Sbjct: 293 LPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAEKTAFHLQSVRPRLPEQKVPDG----H 348

Query: 306 EEENELRNKAVAGLEVRLAQ 325
              + LR+    G  V L +
Sbjct: 349 TPISWLRHLVEEGRRVLLRE 368


>gi|218514385|ref|ZP_03511225.1| DNA polymerase III subunit alpha [Rhizobium etli 8C-3]
          Length = 256

 Score =  230 bits (587), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 129/227 (56%), Positives = 161/227 (70%), Gaps = 1/227 (0%)

Query: 3   QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           + +  +P F+HL+VHS+YSLLEGAL L  I+ K A D QPAIAITDTNNLF ALEFSQKA
Sbjct: 11  EAIGGTPGFIHLRVHSAYSLLEGALPLKKIIYKAAGDNQPAIAITDTNNLFVALEFSQKA 70

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
              G+QPIIGCQ+ IDM+D L+   +G +     +PSIVLL +T  GY+RL++LVSR YL
Sbjct: 71  MDDGLQPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATEAGYERLVDLVSRAYL 130

Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                Q++ I  SWL+E GTEGLI LTG  +GP+D A     +  AE RLL  K+LFGDR
Sbjct: 131 GGDSNQAIHIRASWLEEAGTEGLIALTGALTGPVDAAIREGHTAQAEARLLMLKRLFGDR 190

Query: 182 LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
           LYV LQRH  YD+  E ++V LAY H+LPLVATN + F + +DY AH
Sbjct: 191 LYVELQRHGTYDKPHEQKIVGLAYAHDLPLVATNEAFFPTRDDYHAH 237


>gi|194246482|ref|YP_002004121.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
 gi|193806839|emb|CAP18268.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
          Length = 1522

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 115/616 (18%), Positives = 217/616 (35%), Gaps = 144/616 (23%)

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L+ ELN I ++ +SGY L   D             P  GSG           T +     
Sbjct: 988  LNQELNEIRKV-YSGYDLPNKD------------CPNCGSG-----------TKLKKDGN 1023

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL  +   +PD D++F  D + +   Y++   G   V +  T  ++  + A   
Sbjct: 1024 DIPFETFLGIEGNKIPDIDLNFAGDYQLKAHNYIKELLGKYNVFRAGTIQTVAERNAYGY 1083

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            +                              + D  +F    L +  + R    ++ ++G
Sbjct: 1084 IK---------------------------GFLKDKQQF----LNESEISR---RTKVIQG 1109

Query: 521  LYRHASTHAAGIVIGDRP--LSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + R    H  GIVI  +   +  + P+     D  S+   T F+    E   L+K D LG
Sbjct: 1110 VKRSTGQHPGGIVIVPKECSIYDITPIQYPANDKDSEWKTTHFDYHSFEN-NLLKLDILG 1168

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLS---LIPFDDHETYHLLT-----TKGT-LGIFQLESS 626
                 +++  +D++ +   + D +    IP DD   Y + +        T LGI +  + 
Sbjct: 1169 HDDPIMIKFLMDYVEKNPQEFDFNKAQDIPLDDELVYKIFSEDNEIKGYTVLGIPEFGTV 1228

Query: 627  GMRQALEGMQPDC-------IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
             +R+ L+ +             D++ +  L         V  NN +   +     H   +
Sbjct: 1229 FVRRMLKDIVNKDSQKTILKFSDLVKISGLSHGT----GVWTNNAEKLIDHNEKNHREFN 1284

Query: 680  PMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
             ++         ++ +M       +    +    + +R+ +  + KE+  + K+      
Sbjct: 1285 EIIA-------CRDDIMIQLIEKKIEPLKAFEIMEFIRKGLPSQNKEQWSEYKKI----- 1332

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
                + +    + +   AK  +Y F K+HA AY +++ + AW K H P+ F +   +   
Sbjct: 1333 ----MKENQIEDWYIDSAKKIEYLFPKAHAVAYVIMAMRIAWFKFHKPLLFYSGYFSKRA 1388

Query: 797  DNVE--------------KIKKF-------CQDA--------------RQFNIQIMPPSV 821
            D+ +              KI           ++A              R+   Q  P  +
Sbjct: 1389 DHFDYDTMTSDKYNAIENKINFLNNNIKNSAKEANLLSILKVAKEFRNRKEKFQFFPIDL 1448

Query: 822  NTPCVDFK--VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            N    +    V +  +      + G+G   A  I+E    KPF   +DF  R    K   
Sbjct: 1449 NKSEKNNFILVKNQGLLMPFITLDGLGPVAASRIIEERKIKPFT-KKDFLKRSKVNKTIF 1507

Query: 880  RVLESLVFAGALDCFG 895
              +ES+   G L+   
Sbjct: 1508 SKIESM---GLLNSLS 1520



 Score =  140 bits (352), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/338 (17%), Positives = 129/338 (38%), Gaps = 33/338 (9%)

Query: 91  TPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGG 150
           + +     I +LVS   GY+ L +++S   L +   +  R+  S L +   EGL++ +G 
Sbjct: 598 SKYERTYDINVLVSNQIGYRNLFKVLSDA-LTNNFYKKPRVLKSVLHQY-REGLLIGSGC 655

Query: 151 SSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYD-----RYRESQVVQL 203
            +G +      +  +  +K +  +   ++   + Y +L    G +          +++Q 
Sbjct: 656 YNGNVFEIALNDDLESLKKAISFYDYIEVQPPQSYNHLIYELGIEGKKIIEQTILKIIQE 715

Query: 204 AYTHELPLVATNNSLFLSEEDYEAHDVLMA---VAHSTVVSQKDRPRVTPDHYLKNRSEM 260
           +   +  ++A+ +  +L   +    ++ +    +        K      PD+      EM
Sbjct: 716 SKKQKKIIIASGDVHYLHPYEKIYREIYINAKLIGGGLHKLSKYEIAQLPDNAFLTTQEM 775

Query: 261 VSIFSDLPEALENTVEIARRCSFILQVHA-PILPRFIEKECDDIQKEEEN------ELRN 313
           +  F+ L   +   + I        ++    I P  +    DD  KE  N      E+++
Sbjct: 776 LDSFNFLDSEIAKEIVITNTNILNQKIEKIKIFPNKLFSLSDDAFKENLNIDSIKLEIKS 835

Query: 314 KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA-------RMKFSGYFLIVADFIQW 366
              + L     +            + R++ E  +I         + FS  + +    ++ 
Sbjct: 836 IVNSKLTELYGK------KPHDLIKDRINKEFEIINGDEKDPNSLNFSPIYYLSHLLVKK 889

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           +  +   VG  RGS   S+ A  L IT+++PL+   + 
Sbjct: 890 SLSDGYLVG-SRGSIGSSLVAKLLEITEVNPLKPHYIC 926



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 38/79 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +   +H+  S L+   S  + L+K       AIA TD N +++  E  + +    I+PI 
Sbjct: 324 IEFHLHTKMSNLDAITSAKDYLEKAEEWGHKAIAFTDHNGIYAYPEIFKYSKDKKIKPIY 383

Query: 72  GCQLDIDMQDNLKMTNQGK 90
           G +L+   +  + +TN  K
Sbjct: 384 GAELEFIEEKPIFITNHNK 402


>gi|39938951|ref|NP_950717.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
 gi|39722060|dbj|BAD04550.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
          Length = 1571

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 101/571 (17%), Positives = 191/571 (33%), Gaps = 131/571 (22%)

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL  +    PD D++F  D + +   Y++   G +   +  T  ++  + A  
Sbjct: 1055 HDIPFETFLGFEGNKTPDIDLNFAGDYQSQAHNYIKELLGEKHAFRAGTIQTVAQRNAY- 1113

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
              G  +     +  +  K                                ++ +I+ K+E
Sbjct: 1114 --GYTMGFVEEKQKQWRK-------------------------------QKVAQIANKIE 1140

Query: 520  GLYRHASTHAAGIVIG--DRPLSQLVPMYRDVRS-DLPVTQFNMKWIEKAGLIKFDFLGL 576
            G+ R    H  GIV+   DR + ++ P+       +   T F+    E+  L K D LG 
Sbjct: 1141 GVKRSNGQHPGGIVVVPPDRSIYEVTPVQYPANDTNWKTTHFDYHSFEQ-NLFKLDILGH 1199

Query: 577  KTLTLLQKSLDFLAQRGVKVDL---SLIPFDDHETYHLLTT---------------KGTL 618
                +++  +D++ +            IP DD E Y L +                  +L
Sbjct: 1200 DDPMMIKFLMDYVKENRRIFPFTRAQDIPVDDPEVYKLFSNEFKIDSSVNPGNKITIDSL 1259

Query: 619  GIFQLESSGMRQALEGMQPD-----------CIEDIIALVSLYRPGPIDNIVVYNNR--- 664
            GI +  +  ++Q L+ +                  ++ +  L       ++   N R   
Sbjct: 1260 GIPEFGTIFVKQMLKDLTTAKKNSQKQAIKINFAALVKISGLSHGT---DVWNQNARDAI 1316

Query: 665  -KNGK-EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             K G+ EK  +     D ++         ++ +M   Q   G    +A  +   + K   
Sbjct: 1317 NKTGEFEKYKNKTISFDDIIG-------CRDDIMLQLQ-EKGLDPLKAFDIMEFIRKGKP 1368

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
                  ++ F +        K      +   A    Y F K+HA AY +++ + AW K H
Sbjct: 1369 ------QDDFQTWNKYKQEIKDKVEAWYIDSAAKIKYLFPKAHATAYVIMALRIAWFKMH 1422

Query: 783  YPVEFLAASMTLEMDNVE-----------------KIK-------------------KFC 806
             P+ F +   +   +  +                 K+                    K  
Sbjct: 1423 APLAFYSGYFSKRTEQFDHQTMISNDIKIIKEKLNKLAELKKSKKIKAKEDALINTLKIA 1482

Query: 807  QDARQFNIQIMPPSVNTPCVD-FKVGDNRI-YYSLAAIKGVGTTTARHIMEASADKPFDS 864
            ++      + +    N   V   K+ D       L ++ G+G   A  I+EA  +KPF  
Sbjct: 1483 EEMVHRGFKFLTVDFNKSDVSVLKIEDGGFLRMPLLSLDGLGLIAANKIVEARQEKPFT- 1541

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             +DF +R    K+N+ +L        LD   
Sbjct: 1542 KDDFATR---SKINKTILAKAKQENLLDSLE 1569



 Score = 65.0 bits (157), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 37/80 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +    H+  S L+   S    L    +    AIA TD + +++  E ++ A    I+PI 
Sbjct: 389 IEFHTHTKMSNLDAINSAKEYLQIAESWGHEAIAFTDHDGIYAYPEINEHAKNKKIKPIY 448

Query: 72  GCQLDIDMQDNLKMTNQGKT 91
           G ++D   +  + +TNQ + 
Sbjct: 449 GVEVDFIEEKPIYITNQKED 468


>gi|254413650|ref|ZP_05027420.1| OB-fold nucleic acid binding domain protein [Microcoleus
            chthonoplastes PCC 7420]
 gi|196179757|gb|EDX74751.1| OB-fold nucleic acid binding domain protein [Microcoleus
            chthonoplastes PCC 7420]
          Length = 386

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 113/259 (43%), Gaps = 13/259 (5%)

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A +T    N +K++K+        I ++ P +N   VDF     +I +  +AI+ +G 
Sbjct: 1    MTALLTASSGNQDKVQKYIATCTTMGIDVLQPDINRSHVDFTPVSGKILFGFSAIRNLGE 60

Query: 848  TTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 I+ +   D  F SL DFC RV+ + +NRR LESL+++GA D    +R QL+  LD
Sbjct: 61   GAIETILHQREKDGDFQSLADFCDRVELRVVNRRALESLIYSGAFDRLESNRKQLINDLD 120

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKG----------TFSDKITLEKFSVENSSVRFENEQ 956
             +  + Q   K+R +   NIF   +            +       K    ++  +   E+
Sbjct: 121  VLISWGQDRAKDRQSGQINIFDVLEDADTNNSERNNAWKAAPKTPKVEDFSAQEKLLQEK 180

Query: 957  RVLGFYFSGHPLDVYKPILRK-MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSR 1014
             +LGFY S HPL   +P   + +      E     +   +    M+   +   T+  G R
Sbjct: 181  ELLGFYVSDHPLKSVRPFANQVLTPINLNELADQNKRTILSAIVMLTEVKFHVTKTSGDR 240

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + +V   +   + +   FP
Sbjct: 241  MAFVQMEDLTGQADGVIFP 259


>gi|37784580|gb|AAP47641.1| DnaE precursor [Oscillatoria limnetica str. 'Solar Lake']
          Length = 254

 Score =  228 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 118/223 (52%), Gaps = 10/223 (4%)

Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
           + A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T   DN +K++++        I
Sbjct: 32  EIASNCFNKSHSMAYGYVTYQTAYLKANYPIEYMAALLTANSDNQDKVQRYIATCLNMGI 91

Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
            + PP +N   VDF     +I + L A++ VG      I+E+   D PF +L D C RVD
Sbjct: 92  AVEPPDINRSGVDFTPLSGKILFGLNAVRNVGHAAILCILESREKDGPFQNLADLCDRVD 151

Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            + +NRR LESL+  GA+DC   +R QLL+ L  +  +A    K+R +   +IF     +
Sbjct: 152 LRTVNRRALESLIQCGAMDCLNSNRHQLLEDLGYVIDWAHTRAKDRASGQGSIFDLFGDS 211

Query: 934 FSDK---------ITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
             ++             + +      +   E+ +LGFY S HP
Sbjct: 212 QEEQPQKKGLEQAPKAPEVADFTPQEKLRLEKDLLGFYISDHP 254


>gi|255606732|ref|XP_002538623.1| conserved hypothetical protein [Ricinus communis]
 gi|223511314|gb|EEF23760.1| conserved hypothetical protein [Ricinus communis]
          Length = 242

 Score =  228 bits (581), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 131/228 (57%), Positives = 163/228 (71%), Gaps = 1/228 (0%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           + P FVHL+VHS+YSLLEGAL L  IL K A D QPAIAI DTNNLF ALEFSQKA   G
Sbjct: 15  EMPEFVHLRVHSAYSLLEGALPLKKILAKAAGDSQPAIAIADTNNLFVALEFSQKAMDEG 74

Query: 67  IQPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           +QPIIGCQ+ IDM+D  +   +G +     +PSIVLL +T +GY+RL++LVSR YL  +G
Sbjct: 75  LQPIIGCQVSIDMEDGGEGEKRGPQQALAKLPSIVLLAATEQGYERLVDLVSRAYLGGEG 134

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             +V I  SWL EIGTEG+I LTG  +GP+D A     +  A  RLL  K+LFGDRLY+ 
Sbjct: 135 NHAVHIAASWLDEIGTEGMIALTGSLTGPVDMALKEGHAPQALSRLLALKRLFGDRLYIE 194

Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           LQRH  YDR  E +++ +AY HE+PLVATN + F + +DY+AHD LMA
Sbjct: 195 LQRHGTYDRRHEQKMIAMAYEHEIPLVATNEAFFPTRDDYDAHDALMA 242


>gi|37784576|gb|AAP47639.1| DnaE precursor [Aphanothece halophytica]
          Length = 255

 Score =  227 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 124/222 (55%), Gaps = 11/222 (4%)

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
           A   FNKSH+ AY+ ++YQTA++K +YPVE++AA +T   +N +KI+K+    R+ NI +
Sbjct: 34  ASNCFNKSHSTAYSYVTYQTAYLKANYPVEYMAALLTASSNNTDKIEKYIDTCRRMNIDV 93

Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDS 874
            PP +N   +DF   + +I + L+A++ +G     +I+ A  +    F SL D C+R+D 
Sbjct: 94  EPPDINRSQIDFTPDNEKILFGLSAVRNLGQGAIENILAAREEAGGTFTSLADLCARIDL 153

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
             +NRR LE+L++ GA D    +R QLL  L+ +  +AQ   K++ +   N+F     + 
Sbjct: 154 HTVNRRALEALIYCGAFDKINSNRNQLLHDLEPVLSWAQSRAKDKASGQTNLFEALNSSQ 213

Query: 935 SDK---------ITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +           T       +++ + ++E+ +LGFY   HP
Sbjct: 214 EEDHNRSDYKDVPTASPVEDFSATDKLKHEKDLLGFYVXXHP 255


>gi|300900776|ref|ZP_07118921.1| DNA polymerase III, alpha subunit [Escherichia coli MS 198-1]
 gi|300355741|gb|EFJ71611.1| DNA polymerase III, alpha subunit [Escherichia coli MS 198-1]
          Length = 189

 Score =  225 bits (574), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 103/188 (54%), Positives = 139/188 (73%), Gaps = 7/188 (3%)

Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNG 667
            +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G
Sbjct: 1   DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 60

Query: 668 KEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
           +E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  
Sbjct: 61  REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 120

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
           EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K H
Sbjct: 121 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 180

Query: 783 YPVEFLAA 790
           YP EF+AA
Sbjct: 181 YPAEFMAA 188


>gi|300990396|ref|ZP_07179194.1| DNA polymerase III, alpha subunit [Escherichia coli MS 200-1]
 gi|300305749|gb|EFJ60269.1| DNA polymerase III, alpha subunit [Escherichia coli MS 200-1]
          Length = 192

 Score =  225 bits (574), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 102/188 (54%), Positives = 138/188 (73%), Gaps = 7/188 (3%)

Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNG 667
            +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +   + +RK+G
Sbjct: 1   DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 60

Query: 668 KEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
           +E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  
Sbjct: 61  REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 120

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
           EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K H
Sbjct: 121 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 180

Query: 783 YPVEFLAA 790
           YP EF+A 
Sbjct: 181 YPAEFMAG 188


>gi|223469661|gb|ACM90173.1| DnaE [Vibrio parahaemolyticus]
 gi|223469669|gb|ACM90177.1| DnaE [Vibrio parahaemolyticus]
 gi|223469679|gb|ACM90182.1| DnaE [Vibrio parahaemolyticus]
 gi|223469683|gb|ACM90184.1| DnaE [Vibrio parahaemolyticus]
 gi|223469691|gb|ACM90188.1| DnaE [Vibrio parahaemolyticus]
          Length = 196

 Score =  224 bits (572), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 109/201 (54%), Positives = 140/201 (69%), Gaps = 8/201 (3%)

Query: 259 EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
           EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       EE   L  K+  G
Sbjct: 1   EMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMEETEFLVMKSREG 55

Query: 319 LEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
           LE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVG
Sbjct: 56  LEERLEFLFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVG 115

Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
           PGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V 
Sbjct: 116 PGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVA 175

Query: 436 NKYGHERVAQIITFGSLQAKA 456
             YG + V+QIITFG++ AKA
Sbjct: 176 EMYGRDAVSQIITFGTMAAKA 196


>gi|223469667|gb|ACM90176.1| DnaE [Vibrio parahaemolyticus]
 gi|223469671|gb|ACM90178.1| DnaE [Vibrio parahaemolyticus]
 gi|223469675|gb|ACM90180.1| DnaE [Vibrio parahaemolyticus]
 gi|223469677|gb|ACM90181.1| DnaE [Vibrio parahaemolyticus]
 gi|223469687|gb|ACM90186.1| DnaE [Vibrio parahaemolyticus]
 gi|223469689|gb|ACM90187.1| DnaE [Vibrio parahaemolyticus]
 gi|223469693|gb|ACM90189.1| DnaE [Vibrio parahaemolyticus]
 gi|223469695|gb|ACM90190.1| DnaE [Vibrio parahaemolyticus]
 gi|223469697|gb|ACM90191.1| DnaE [Vibrio parahaemolyticus]
          Length = 196

 Score =  224 bits (572), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 109/201 (54%), Positives = 140/201 (69%), Gaps = 8/201 (3%)

Query: 259 EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
           EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       EE   L  K+  G
Sbjct: 1   EMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMEETEFLVMKSREG 55

Query: 319 LEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
           LE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVG
Sbjct: 56  LEERLEFLFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVG 115

Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
           PGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V 
Sbjct: 116 PGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVA 175

Query: 436 NKYGHERVAQIITFGSLQAKA 456
             YG + V+QIITFG++ AKA
Sbjct: 176 EMYGRDAVSQIITFGTMAAKA 196


>gi|163785584|ref|ZP_02180146.1| DNA polymerase III alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879148|gb|EDP73090.1| DNA polymerase III alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 243

 Score =  224 bits (572), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 113/238 (47%), Gaps = 6/238 (2%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S  F HL +HS YSLL+GA+ +  +  K       A+A+TD  N+F A+EF Q+    G+
Sbjct: 2   SKDFTHLHLHSHYSLLDGAIKIPELAKKAKEYGYKAVALTDHGNIFGAIEFYQEMKKVGV 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPF--PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           +PIIG +      +  +   +G           ++L      G++ L++L S  Y     
Sbjct: 62  KPIIGMEAYFTN-NRFEKKGEGSDSILADKNYHLILHAKDKTGFKNLMKLSSLAYTEG-F 119

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
               RI    L++   EGLI  T    G I           A +     K +FG+ LY  
Sbjct: 120 YYKPRIDWELLEKYH-EGLICQTACLKGFIPHLLSKGKFDEAYEYGKRLKDIFGEDLYFE 178

Query: 186 LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           +Q +   ++      +++LA   ++ +VATN+S +L+EED EAHDV+ A+     + +
Sbjct: 179 IQINGLEEQEIANKGILELAEKLDVKVVATNDSHYLNEEDAEAHDVIKALQMKMTLKE 236


>gi|223469673|gb|ACM90179.1| DnaE [Vibrio parahaemolyticus]
          Length = 196

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 108/201 (53%), Positives = 139/201 (69%), Gaps = 8/201 (3%)

Query: 259 EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
           EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       EE   L  K+  G
Sbjct: 1   EMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMEETEFLVMKSREG 55

Query: 319 LEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
           LE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVG
Sbjct: 56  LEERLEFLFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVG 115

Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
           PGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V 
Sbjct: 116 PGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVA 175

Query: 436 NKYGHERVAQIITFGSLQAKA 456
             YG + V+ IITFG++ AKA
Sbjct: 176 EMYGRDAVSHIITFGTMAAKA 196


>gi|75677041|ref|YP_319462.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Nitrobacter
            winogradskyi Nb-255]
 gi|74421911|gb|ABA06110.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Nitrobacter
            winogradskyi Nb-255]
          Length = 409

 Score =  223 bits (568), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 60/305 (19%), Positives = 117/305 (38%), Gaps = 18/305 (5%)

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
               NG  +  A   F  +  F  YGF +S+AA++A+++Y ++W+K H+P  F AA +  +
Sbjct: 1    MIANGYDRDFAERTFSQIEGFGSYGFPESYAASFALLAYASSWLKCHHPDVFCAALLNAQ 60

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRIYYSLAAIKGVGTTT 849
                    +  +DA++  +++ P  VN    D  +          +   +  +KG+    
Sbjct: 61   PMGFCAPAQIVRDAKEHGVEVHPVCVNASRWDCTLEMTGCEDRFAVRLGMRMVKGLANAD 120

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSLDNI 908
            A  I+    + PF S++D   R      +   L  L  A A  +  G  R   L ++  +
Sbjct: 121  AAAIIATRGEAPFISVDDLSRRASVPAAS---LVQLADADAFRESLGLPRRDALWAIRAL 177

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
            +     +      +     A         + L   +     V    +   +G     HP+
Sbjct: 178  RDTPLPLFAAAARREA---ATVPEIREPAVALRPMTAGAEVV---EDYGHVGLTLRHHPV 231

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
               +  L +  I    E++A   G     A +V+ +Q   + KG  + ++T  +      
Sbjct: 232  SFLRGDLARRRIVPCAEAMAARDGRWCEAAGIVLVRQMPGSAKG--VMFITIEDETGIAN 289

Query: 1029 ANFFP 1033
               +P
Sbjct: 290  VVVWP 294


>gi|223469685|gb|ACM90185.1| DnaE [Vibrio parahaemolyticus]
          Length = 196

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 109/201 (54%), Positives = 140/201 (69%), Gaps = 8/201 (3%)

Query: 259 EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
           EM  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       EE   L  K+  G
Sbjct: 1   EMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMEETEFLVMKSREG 55

Query: 319 LEVRLAQGAIA---KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
           LE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVG
Sbjct: 56  LEERLEFLFPEEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVG 115

Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
           PGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V 
Sbjct: 116 PGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVA 175

Query: 436 NKYGHERVAQIITFGSLQAKA 456
             YG + V+QIITFG++ AKA
Sbjct: 176 EMYGRDAVSQIITFGTMAAKA 196


>gi|223469663|gb|ACM90174.1| DnaE [Vibrio parahaemolyticus]
 gi|223469665|gb|ACM90175.1| DnaE [Vibrio parahaemolyticus]
 gi|223469681|gb|ACM90183.1| DnaE [Vibrio parahaemolyticus]
          Length = 196

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 108/201 (53%), Positives = 140/201 (69%), Gaps = 8/201 (3%)

Query: 259 EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
           +M  +F+D+PEALEN+VEIA+RC+  +++    LP F  +       EE   L  K+  G
Sbjct: 1   DMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMEETEFLVMKSREG 55

Query: 319 LEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
           LE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVG
Sbjct: 56  LEERLEFLFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVG 115

Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
           PGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V 
Sbjct: 116 PGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVA 175

Query: 436 NKYGHERVAQIITFGSLQAKA 456
             YG + V+QIITFG++ AKA
Sbjct: 176 EMYGRDAVSQIITFGTMAAKA 196


>gi|329770058|ref|ZP_08261453.1| hypothetical protein HMPREF0433_01217 [Gemella sanguinis M325]
 gi|328837369|gb|EGF86999.1| hypothetical protein HMPREF0433_01217 [Gemella sanguinis M325]
          Length = 414

 Score =  221 bits (562), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 159/310 (51%), Gaps = 16/310 (5%)

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M+     FI  +   G  + +A ++F+L+  FA+YGFNKSHA  Y++++Y+ A++K +Y 
Sbjct: 1    MEYYGRIFIEKSVAAGYDRNVAKSLFDLIVTFANYGFNKSHAVVYSMLAYRLAYLKVYYT 60

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
              F+ A +   + + +KI ++ Q+     I+++ P VN    DF V    I ++L AIK 
Sbjct: 61   KYFMTALLNNVISSEKKINEYKQELNNLGIKLIKPDVNVSLSDFSVYKQDIVFALTAIKN 120

Query: 845  VGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG  ++  I++   +   +  ++DF  R++ KK++ +   SLV AGALD FGY+R  L++
Sbjct: 121  VGYRSSYEIVQDRLNFGKYLDIDDFLKRMN-KKVDYQAAASLVKAGALDTFGYNRATLMK 179

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             + +  +  +    N         + E G     + +E+    + + R + E+ V G YF
Sbjct: 180  KVKDYYEDNRQYINNVRVA----LSAETGL---TLKVEEVEDYSITERIQMEKEVTGTYF 232

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
              HP+ V K    K      +     I  + +     V++K++ KT+ G  + ++T ++ 
Sbjct: 233  LKHPVQVEKE---KYSYLPLQYIGRDITDSYVE----VITKKEIKTKNGDYMAFLTVNDG 285

Query: 1024 AKEYEANFFP 1033
              +Y+   FP
Sbjct: 286  KNDYDITVFP 295


>gi|228471411|ref|ZP_04056206.1| DNA polymerase III, alpha subunit family [Porphyromonas uenonis
           60-3]
 gi|228306785|gb|EEK15911.1| DNA polymerase III, alpha subunit family [Porphyromonas uenonis
           60-3]
          Length = 429

 Score =  219 bits (557), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 89/269 (33%), Positives = 136/269 (50%), Gaps = 5/269 (1%)

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
           TH   I I  + +  +V + +    + P    +M   E AGLI F  L  + L+++   L
Sbjct: 152 THP--IFICSQNIVDIVSVEKKGVRNRPTIAVSMLDAEDAGLIPFHLLRTEALSVIDLCL 209

Query: 587 DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
                     DL  +P +D  T +L     T GI+  +SS M+  L    P   E+++AL
Sbjct: 210 TM---SDGNFDLDNLPLNDKTTMNLFRQGDTCGIYDFDSSTMQDLLRQAAPQTFEELVAL 266

Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            ++  PGP+D    Y  RKNG + I  + P +  +L  T G+ IYQEQ+M IAQ L+ ++
Sbjct: 267 YTMCHPGPLDWTTEYIARKNGDKPIEYVIPELREILGYTYGMTIYQEQIMLIAQRLASFT 326

Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             E+D LRR +GKK  +     K++FI+  ++NG        IFE       Y F +SHA
Sbjct: 327 PGESDQLRRDLGKKKYDSFVVLKDKFIAQGTRNGFPTDALRGIFEEWEHTTCYTFIRSHA 386

Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLE 795
             Y  ++YQ  ++K H+P EF  A  T+E
Sbjct: 387 VCYTFLAYQIGYLKVHFPKEFATAYKTME 415



 Score =  137 bits (346), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 57/151 (37%), Positives = 82/151 (54%), Gaps = 9/151 (5%)

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
           ++  +  D    +E  LR+  V G   R  +        + +   R+D+EL  I    ++
Sbjct: 6   YLLPKYWDNASGDEEYLRDLVVEGACERYGED------WSDELANRIDYELRYIEDSGYA 59

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFLIVAD++Q A++    V PGRGS AGS+  Y L IT IDPL+F LLFERF NPD+  
Sbjct: 60  DYFLIVADYVQHAREIG-RVSPGRGSAAGSIVNYCLGITSIDPLKFGLLFERFCNPDKRL 118

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
           +PD DID     + ++  Y+   Y  + VA 
Sbjct: 119 LPDIDIDVDMATQGKMFDYLSEHY--DHVAY 147


>gi|76581584|gb|ABA51059.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia pseudomallei
            1710b]
          Length = 389

 Score =  218 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 107/244 (43%), Gaps = 14/244 (5%)

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI-------YYSLAAIKGVGTT 848
            MD+ +K+K    D     + ++PP +N     F+              Y L AIKG G  
Sbjct: 1    MDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKRSRTIRYGLGAIKGSGQN 60

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
                I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA D    +R QLL S+   
Sbjct: 61   AIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAFDSLHENRAQLLASVPLA 120

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             + A+    N       +F    G  + +  L      +   R + E+  LGFY SGH  
Sbjct: 121  MEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKRRLQEEKGALGFYLSGHLF 177

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            D Y+  +R+   +   E      G +  +A ++ S + + T++G  +      +   + E
Sbjct: 178  DAYRDEVRRFVRQKLGEL---KEGRDKVVAGVIASLRTQMTQRGK-MVIALLDDGTGQCE 233

Query: 1029 ANFF 1032
               F
Sbjct: 234  VTVF 237


>gi|255523409|ref|ZP_05390378.1| PHP domain protein [Clostridium carboxidivorans P7]
 gi|255512867|gb|EET89138.1| PHP domain protein [Clostridium carboxidivorans P7]
          Length = 232

 Score =  217 bits (552), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 58/218 (26%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           EK+  +V L  H+ YSLL+ +  +  ++ K       +IAITD   ++  ++F ++A   
Sbjct: 3   EKTYDWVSLHQHTGYSLLDSSAKIPELISKAKELGMKSIAITDHGVMYGCVDFYKEAKEQ 62

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           GI+PIIGC++ +  +      N  +        +VLLV    GY+ L+++VS+  +    
Sbjct: 63  GIKPIIGCEVYVAGKSMHIKQNDKEN---ENYHLVLLVKNETGYKNLMKIVSKASVEG-F 118

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
               R    +L++  +EGLI L+    G I       +   A++  L +K +F D  Y+ 
Sbjct: 119 YYKPRTDHDYLKK-HSEGLISLSACLGGEIQSYILKGNLSKAKEIALLYKDIFKDGFYLE 177

Query: 186 LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSE 222
           LQ H   ++ +   ++++++   ++PLVATN+  ++ +
Sbjct: 178 LQYHGMEEQEKVNEELIKMSKELDIPLVATNDVHYIKK 215


>gi|218508746|ref|ZP_03506624.1| DNA polymerase III protein, alpha subunit [Rhizobium etli Brasil 5]
          Length = 393

 Score =  215 bits (547), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 114/297 (38%), Gaps = 35/297 (11%)

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            +YGF +SHAA++A++ Y ++W+K +YP  F AA +  +        +  +DAR+  ++I+
Sbjct: 1    EYGFPESHAASFALLVYASSWLKAYYPDVFCAAMLNSQPMGFYAPAQLVRDAREHGVRIL 60

Query: 818  PPSVNTPCVDFKVG----------------------DNRIYYSLAAIKGVGTTTARHIME 855
               +N    D  +                        + +      IKG+ +   + ++ 
Sbjct: 61   AVDINESEWDCTLEEAVFDRKTVDFRHGQMREIIKTRHAVRLGFRQIKGLSSDDMKRLVG 120

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
                  + S+ D   R     L + V+E L  A A      SR + L ++  +       
Sbjct: 121  NRGQG-YGSVRDLWLR---SGLPKSVIERLADADAFRSIHLSRREALWAVRAL------- 169

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            +     +   +F   +          K        +   + R L      HP+   +  L
Sbjct: 170  DVKSAAEELPLFEQVRHIDLQPEPAAKLPDMLPGEQVIEDYRYLSLSLKAHPVSFLREEL 229

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            RK GI    + ++   G  + +A +V+ +Q+  + KG  + ++T  +      A  +
Sbjct: 230  RKAGITRNVDLLSVPNGKRVTIAGLVLVRQRPGSAKG--VIFMTLEDETGVANAIVW 284


>gi|255019086|ref|ZP_05291212.1| hypothetical protein LmonF_17486 [Listeria monocytogenes FSL
           F2-515]
          Length = 188

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 83/187 (44%), Positives = 123/187 (65%), Gaps = 1/187 (0%)

Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
            +     +Y++RL++EL VI  M F+ YFLIV D I+++++  +  GPGRGS AGS+ +Y
Sbjct: 3   ERNLLGMEYQERLEYELKVITEMGFADYFLIVWDVIRYSREAGVLTGPGRGSAAGSLVSY 62

Query: 389 ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
           AL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRDEVI YV +KYG   VAQI T
Sbjct: 63  ALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRDEVISYVVSKYGEAHVAQIGT 122

Query: 449 FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
           FG+L AKAA+RD  R+  +    +    KLIP+     +  +A+ +  R      +    
Sbjct: 123 FGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITLQ-EALQESPRLENHIKSSKEN 181

Query: 509 DRLLEIS 515
           + + E++
Sbjct: 182 EMIWEVA 188


>gi|296163562|ref|ZP_06846301.1| DNA-directed DNA polymerase [Burkholderia sp. Ch1-1]
 gi|295886188|gb|EFG66067.1| DNA-directed DNA polymerase [Burkholderia sp. Ch1-1]
          Length = 372

 Score =  212 bits (539), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 65/318 (20%), Positives = 126/318 (39%), Gaps = 27/318 (8%)

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             + +DK  +R ++G  + G  K  A +IF+ +  F +Y F +SHAA++A++ Y ++W+K 
Sbjct: 22   PDGIDKYYDRIVNGMMERGYEKDFAESIFQQIHGFGEYSFPESHAASFALLVYASSWLKC 81

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------RI 835
            H P  FL A +     +     +F QDA++ N++++P  V     +  +  +       +
Sbjct: 82   HEPEAFLVAMLNSMPLDFYSASQFIQDAQRHNVKVLPADVTISNWNSVLERHKSASRPAV 141

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L+ +KG+    A  I  A A + F S+ D   R    + + +VL +   A +L    
Sbjct: 142  RLGLSLLKGMKDGAAERIEAARAVRQFASVSDLAKRAQLDRKDLQVLAA---ANSLSSLA 198

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R + L +          +   R +    +                            +
Sbjct: 199  GNRREALWASVAAVPDRDILADARMDDETPVLG----------------APTEGEDIVAD 242

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
               +      HPL + +P L +  +      +    G   R   +V  +Q+  T KG  +
Sbjct: 243  YNSMSLTLGRHPLSLLRPALLEQRLVPAATLMTYRNGRLARGCGLVTVRQRPGTAKG--V 300

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +VT  +         +P
Sbjct: 301  MFVTIEDETGNVNIIIWP 318


>gi|149688722|gb|ABR27772.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
          Length = 316

 Score =  211 bits (537), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 97/332 (29%), Positives = 158/332 (47%), Gaps = 25/332 (7%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
               + P + I+DT+NL  ALEF++     G QPIIG Q+    +D   +          
Sbjct: 2   CKEKKIPCLGISDTSNLCGALEFAENISKVGTQPIIGTQIYFRFEDTTGL---------- 51

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
              + L+     GY+R+IEL SR YL +       + +  L  I TEG+ +L+G   G  
Sbjct: 52  ---LPLIALNENGYKRIIELSSRSYLENDALSDPHLDVKDLL-IDTEGVSLLSGTIQGLF 107

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVAT 214
            + F         K   +    F D  Y+ +QRH   +     +  ++ +   ++P++AT
Sbjct: 108 GKLFEKGRLDEISKLYRSLSSKFNDNFYLEIQRHGDQNEIAFEKFNLEQSLKIQIPIIAT 167

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
           N   +L+ + +EAHD L  +   T V++K+R + +  HY K+  EM  +FSDLPEALEN 
Sbjct: 168 NEVYYLTPDMHEAHDALTCIGSKTYVNEKNRIKYSNQHYFKSNEEMSKLFSDLPEALENN 227

Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL------AQGAI 328
             +  +C+F  Q   P+LP    ++        +  L+  ++ GL+ +        +  +
Sbjct: 228 FNLPFKCNFRPQFSKPVLPNISSEKG----GNADEMLKKDSLDGLKEKFQKVFKIEENNL 283

Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                   Y+ RLD EL +I  MK+  YFLIV
Sbjct: 284 KTDDKFLKYKDRLDHELKIIIEMKYPSYFLIV 315


>gi|32481342|gb|AAP84018.1| catalase [Vibrio cholerae]
          Length = 188

 Score =  210 bits (535), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 99/193 (51%), Positives = 133/193 (68%), Gaps = 8/193 (4%)

Query: 264 FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
           F+++P+AL N+V+IA+RC+  +++    LP F            E+ L  K+  GLE RL
Sbjct: 1   FANIPKALANSVQIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERL 55

Query: 324 A---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                    +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGS
Sbjct: 56  EFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGS 115

Query: 381 GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
           GAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG 
Sbjct: 116 GAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGR 175

Query: 441 ERVAQIITFGSLQ 453
           + V+QIITFG++ 
Sbjct: 176 DAVSQIITFGTMA 188


>gi|149688712|gb|ABR27767.1| ATP-dependent helicase [Candidatus Pelagibacter ubique HTCC1002]
 gi|149688714|gb|ABR27768.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
 gi|149688716|gb|ABR27769.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
 gi|149688718|gb|ABR27770.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
 gi|149688720|gb|ABR27771.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
 gi|149688724|gb|ABR27773.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
          Length = 316

 Score =  210 bits (535), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 97/332 (29%), Positives = 158/332 (47%), Gaps = 25/332 (7%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
               + P + I+DT+NL  ALEF++     G QPIIG Q+    +D   +          
Sbjct: 2   CKEKKIPCLGISDTSNLCGALEFAENISKVGTQPIIGTQIYFRFEDTTGL---------- 51

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
              + L+     GY+R+IEL SR YL +       + +  L  I TEG+ +L+G   G  
Sbjct: 52  ---LPLIALNENGYKRIIELSSRSYLENDALSDPHLDVKDLL-IDTEGVSLLSGTIQGLF 107

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVAT 214
            + F         K   +    F D  Y+ +QRH   +     +  ++ +   ++P++AT
Sbjct: 108 GKLFEKGRLDEISKLYRSLSSKFNDNFYLEIQRHGDQNEIAFEKFNLEQSLKIQIPIIAT 167

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
           N   +L+ + +EAHD L  +   T V++K+R + +  HY K+  EM  +FSDLPEALEN 
Sbjct: 168 NEVYYLTPDMHEAHDALTCIGSKTYVNEKNRIKYSNQHYFKSNEEMSKLFSDLPEALENN 227

Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL------AQGAI 328
             +  +C+F  Q   P+LP    ++        +  L+  ++ GL+ +        +  +
Sbjct: 228 FNLPFKCNFRPQFSKPVLPNISSEKG----GSADEILKKDSLDGLKEKFLKVFKVEENNL 283

Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                   Y+ RLD EL +I  MK+  YFLIV
Sbjct: 284 KTDDKFLKYKDRLDHELKIIIEMKYPSYFLIV 315


>gi|213609969|ref|ZP_03369795.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. E98-2068]
          Length = 338

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 94/205 (45%), Gaps = 3/205 (1%)

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +  I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ +G
Sbjct: 5    DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 64

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENS 948
            A D  G  R  L+ SL +  K A    K       ++F    +     + +         
Sbjct: 65   AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPE 124

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +  
Sbjct: 125  QVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVM 184

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 185  VTKRGNRIGICTLDDRSGRLEVMLF 209


>gi|149688728|gb|ABR27775.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
          Length = 316

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 97/332 (29%), Positives = 158/332 (47%), Gaps = 25/332 (7%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
               + P + I+DT+NL  ALEF++     G QPIIG Q+    +D   +          
Sbjct: 2   CKEKKIPCLGISDTSNLCGALEFAENISKVGTQPIIGTQIYFKFEDTTGL---------- 51

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
              + L+     GY+R+IEL SR YL +       + +  L  I TEG+ +L+G   G  
Sbjct: 52  ---LPLIALNENGYKRIIELSSRSYLENDALSDPHLDVKELL-IDTEGVSLLSGTIQGLF 107

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVAT 214
            + F         K   +    F D  Y+ +QRH   +     +  ++ +   ++P++AT
Sbjct: 108 GKLFEKGRLDEISKLYRSLSSKFNDNFYLEIQRHGDQNEIAFEKFNLEQSLKIQIPIIAT 167

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
           N   +L+ + +EAHD L  +   T V++K+R + +  HY K+  EM  +FSDLPEALEN 
Sbjct: 168 NEVYYLTPDMHEAHDALTCIGSKTYVNEKNRIKYSNQHYFKSNEEMSKLFSDLPEALENN 227

Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL------AQGAI 328
             +  +C+F  Q   P+LP    ++        +  L+  ++ GL+ +        +  +
Sbjct: 228 FNLPFKCNFRPQFSKPVLPNISSEKG----GSADEILKKDSLDGLKEKFQKVFKIEENNL 283

Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                   Y+ RLD EL +I  MK+  YFLIV
Sbjct: 284 KTDDKFLKYKDRLDHELKIIIEMKYPSYFLIV 315


>gi|156069377|gb|ABU44601.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
          Length = 185

 Score =  209 bits (531), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 103/190 (54%), Positives = 132/190 (69%), Gaps = 8/190 (4%)

Query: 266 DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA- 324
           D+PEALEN+VEIA+RC+  +++    LP F  +       EE   L  K+  GLE RL  
Sbjct: 1   DIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMEETEFLVMKSREGLEERLEF 55

Query: 325 --QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                  +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGA
Sbjct: 56  LFPDVEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGA 115

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
           GS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + 
Sbjct: 116 GSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDA 175

Query: 443 VAQIITFGSL 452
           V+QIITFG++
Sbjct: 176 VSQIITFGTM 185


>gi|68271948|gb|AAY89240.1| putative DNA polymerase III alpha subunit [uncultured bacterium
            BAC-L1N9]
          Length = 437

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 75/370 (20%), Positives = 142/370 (38%), Gaps = 38/370 (10%)

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            + +    +G  LS  D LR+A+ KK   +++      F +GA+  G    +AV ++E++ 
Sbjct: 2    LNVCAAFAGMPLSTGDGLRKALSKKRPTKQLAAYAGEFFAGAAALGRDPEVAVKVWEMVL 61

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y F K H+ +Y  ++    +++ HYP EF+AA +        +   +  +A +  +
Sbjct: 62   SFAGYSFCKGHSCSYIRVAQHACYLRAHYPAEFIAAVL-ANGGGFYRPFAYVAEAMRMGL 120

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-------------- 860
             + PP VN         D  +      IKG+   T   I  A  ++              
Sbjct: 121  AVRPPDVNASAFRTTGHDGEVRIGFQFIKGLSDDTVERIACARGEQGTGNGERDNAPVAR 180

Query: 861  --------PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF--GYSRMQLLQSLDNIQK 910
                    PF S +D   R + +  + R+L   +  GA D    G +R  +L ++D    
Sbjct: 181  SPFPVPGSPFVSFDDLRIRTNLRPDDLRLL---IRVGACDAIAGGMTRPMMLWAVDAASP 237

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFS-------DKITLEKFSVENSSVRFENEQRVLGFYF 963
                           +FA    + +       +   + +    ++  R   E  +LGF  
Sbjct: 238  PGPLSTFVER-GSTALFASFPLSLARERGTGGEGTGVPRLREYDTDRRRRAEYELLGFTT 296

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
              HP+ ++   L +  +     ++    G  +  A M+ + +   T     + + TF + 
Sbjct: 297  DIHPMRLFTEELSRFRVVK-STALPQHVGRTVLCAGMLTTAKPVHTITEEPMEFATFDDG 355

Query: 1024 AKEYEANFFP 1033
                E   FP
Sbjct: 356  DGLIETVLFP 365


>gi|156069341|gb|ABU44583.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069343|gb|ABU44584.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069345|gb|ABU44585.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069347|gb|ABU44586.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069349|gb|ABU44587.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069351|gb|ABU44588.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069353|gb|ABU44589.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069355|gb|ABU44590.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069359|gb|ABU44592.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069361|gb|ABU44593.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069363|gb|ABU44594.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069365|gb|ABU44595.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069367|gb|ABU44596.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069369|gb|ABU44597.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069371|gb|ABU44598.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069373|gb|ABU44599.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069375|gb|ABU44600.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069379|gb|ABU44602.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069381|gb|ABU44603.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069383|gb|ABU44604.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069385|gb|ABU44605.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069387|gb|ABU44606.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|193221945|gb|ACF16337.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
          Length = 185

 Score =  208 bits (529), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 103/190 (54%), Positives = 132/190 (69%), Gaps = 8/190 (4%)

Query: 266 DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA- 324
           D+PEALEN+VEIA+RC+  +++    LP F  +       EE   L  K+  GLE RL  
Sbjct: 1   DIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMEETEFLVMKSREGLEERLEF 55

Query: 325 --QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                  +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGA
Sbjct: 56  LFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGA 115

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
           GS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + 
Sbjct: 116 GSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDA 175

Query: 443 VAQIITFGSL 452
           V+QIITFG++
Sbjct: 176 VSQIITFGTM 185


>gi|156069319|gb|ABU44572.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069321|gb|ABU44573.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069323|gb|ABU44574.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069325|gb|ABU44575.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069327|gb|ABU44576.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069329|gb|ABU44577.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069331|gb|ABU44578.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069333|gb|ABU44579.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069335|gb|ABU44580.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069337|gb|ABU44581.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069339|gb|ABU44582.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069357|gb|ABU44591.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|193221941|gb|ACF16335.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|193221943|gb|ACF16336.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
          Length = 185

 Score =  208 bits (529), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 103/190 (54%), Positives = 132/190 (69%), Gaps = 8/190 (4%)

Query: 266 DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA- 324
           D+PEALEN+VEIA+RC+  +++    LP F  +       EE   L  K+  GLE RL  
Sbjct: 1   DIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMEETEFLVMKSREGLEERLEF 55

Query: 325 --QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                  +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGA
Sbjct: 56  LFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGA 115

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
           GS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + 
Sbjct: 116 GSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDA 175

Query: 443 VAQIITFGSL 452
           V+QIITFG++
Sbjct: 176 VSQIITFGTM 185


>gi|156069389|gb|ABU44607.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
          Length = 185

 Score =  208 bits (529), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 102/190 (53%), Positives = 131/190 (68%), Gaps = 8/190 (4%)

Query: 266 DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA- 324
           D+PEALEN+VEIA+RC+  +++    LP F  +       EE   L  K+  GLE RL  
Sbjct: 1   DIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMEETEFLVMKSREGLEERLEF 55

Query: 325 --QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                  +     +Y +R   EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGA
Sbjct: 56  LFPNEEERKKRRPEYDERFQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGA 115

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
           GS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + 
Sbjct: 116 GSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDA 175

Query: 443 VAQIITFGSL 452
           V+QIITFG++
Sbjct: 176 VSQIITFGTM 185


>gi|149688726|gb|ABR27774.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
          Length = 316

 Score =  208 bits (529), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 96/332 (28%), Positives = 158/332 (47%), Gaps = 25/332 (7%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
               + P + I+DT+NL  +LEF++     G QPIIG Q+    +D   +          
Sbjct: 2   CKEKKIPCLGISDTSNLCGSLEFAENISKVGTQPIIGTQIYFRFEDTTGL---------- 51

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
              + L+     GY+R+IEL SR YL +       + +  L  I TEG+ +L+G   G  
Sbjct: 52  ---LPLIALNENGYKRIIELSSRSYLENDALSDPHLDVKDLL-IDTEGVSLLSGTIQGLF 107

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVAT 214
            + F         K   +    F D  Y+ +QRH   +     +  ++ +   ++P++AT
Sbjct: 108 GKLFEKGRLDEISKLYRSLSSKFNDNFYLEIQRHGDQNEIAFEKFNLEQSLKIQIPIIAT 167

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
           N   +L+ + +EAHD L  +   T V++K+R + +  HY K+  EM  +FSDLPEALEN 
Sbjct: 168 NEVYYLTPDMHEAHDALTCIGSKTYVNEKNRIKYSNQHYFKSNEEMSKLFSDLPEALENN 227

Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL------AQGAI 328
             +  +C+F  Q   P+LP    ++        +  L+  ++ GL+ +        +  +
Sbjct: 228 FNLPFKCNFRPQFSKPVLPNISSEKG----GSADEILKKDSLDGLKEKFLKVFKIEENNL 283

Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                   Y+ RLD EL +I  MK+  YFLIV
Sbjct: 284 KTNDKFLKYKDRLDHELKIIIEMKYPSYFLIV 315


>gi|257487763|ref|ZP_05641804.1| error-prone DNA polymerase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 207

 Score =  207 bits (528), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 69/208 (33%), Positives = 115/208 (55%), Gaps = 6/208 (2%)

Query: 496 SRFREARLAD--PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            R RE       P + R+L ++ +L G  RH S H  G VI + PL  LVP+     +D 
Sbjct: 1   ERLREYGFDADMPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLVPVENAAMADR 60

Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLL 612
            + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P DD +TY ++
Sbjct: 61  TIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADLPGDDRKTYEMI 120

Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEK 670
           +   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  D +  Y  R+N +E 
Sbjct: 121 SRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRRNKEEA 180

Query: 671 IVSIHPLIDPMLKETQGVIIYQEQVMQI 698
           I    P +  + + T GV ++QEQVM++
Sbjct: 181 ITYP-PKLKSVFERTLGVPLFQEQVMEV 207


>gi|149001610|ref|ZP_01826583.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
 gi|147760068|gb|EDK67057.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
          Length = 1113

 Score =  207 bits (528), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 89/510 (17%), Positives = 166/510 (32%), Gaps = 112/510 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
            EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200  -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                 ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719  TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248  VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779  PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTPFIDKAEE 838

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +        KA            I           R++ EL  I    F+  +L   
Sbjct: 839  TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQ 884

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF--------------------- 400
              +Q + +    VG  RGS   S  A  + IT+++PL                       
Sbjct: 885  MLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSG 943

Query: 401  --------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  D   +PD D++F  + +      V++ +G 
Sbjct: 944  FDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGE 1003

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E   +  T G++ AK A   V +  +  Y +  R                          
Sbjct: 1004 EYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYR-------------------------- 1036

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAA 530
                D  V+RL   +Q   G+ R    H  
Sbjct: 1037 ----DAEVERL---AQGAAGVKRTTGQHPG 1059



 Score = 84.6 bits (208), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|32481344|gb|AAP84019.1| catalase [Vibrio cholerae]
          Length = 183

 Score =  207 bits (528), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 100/188 (53%), Positives = 129/188 (68%), Gaps = 8/188 (4%)

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA-- 324
           +PEAL N+VEIA+RC+  +++    LP F            E+ L  K+  GLE RL   
Sbjct: 1   IPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFL 55

Query: 325 -QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                 +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAG
Sbjct: 56  FPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAG 115

Query: 384 SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
           S+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + V
Sbjct: 116 SLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAV 175

Query: 444 AQIITFGS 451
           +QIITFG+
Sbjct: 176 SQIITFGT 183


>gi|257487764|ref|ZP_05641805.1| error-prone DNA polymerase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 226

 Score =  207 bits (527), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 114/234 (48%), Gaps = 13/234 (5%)

Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
           + +L+    +   + D    L  +V IARRC+F L+      P  +  +     +   + 
Sbjct: 1   ERHLRPLDALAEHYPDW--LLAESVRIARRCTFDLKQLKYEYPHELVPKG----QTPTSW 54

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           LR     G   R   G           R +++ EL +I   KF  YFL V D +++A+  
Sbjct: 55  LRELTERGARKRWPNGLTPAT------RAQVEKELALITEKKFDSYFLTVHDIVEFARSQ 108

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
           +I +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  DRR+EV
Sbjct: 109 HI-LCQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERNEPPDIDVDFEHDRREEV 167

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           I+Y+  +YG  R A      +     A+RDV + L +P  Q++ L         
Sbjct: 168 IQYIFRRYGRGRAALTAVASTYHGSGAVRDVAKVLGLPPDQINALADAFSRWSD 221


>gi|193221947|gb|ACF16338.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
          Length = 185

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 102/190 (53%), Positives = 132/190 (69%), Gaps = 8/190 (4%)

Query: 266 DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA- 324
           D+PEALEN+VEIA+RC+  +++    LP F  +       +E   L  K+  GLE RL  
Sbjct: 1   DIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMKETEFLVMKSREGLEERLEF 55

Query: 325 --QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                  +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGA
Sbjct: 56  LFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGA 115

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
           GS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + 
Sbjct: 116 GSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDA 175

Query: 443 VAQIITFGSL 452
           V+QIITFG++
Sbjct: 176 VSQIITFGTM 185


>gi|196044660|ref|ZP_03111895.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225865799|ref|YP_002751177.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|229186057|ref|ZP_04313227.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
 gi|196024695|gb|EDX63367.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225786021|gb|ACO26238.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|228597476|gb|EEK55126.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
          Length = 970

 Score =  206 bits (524), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 78/398 (19%), Positives = 148/398 (37%), Gaps = 42/398 (10%)

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578 LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
           +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637 RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696 HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 753

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754 -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDVAKEIVVTNTQKIASLIGDVHPVKDDLYT 812

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813 PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL---------LFERFL 408
           LI    ++ +  +   VG  RGS   S  A  + IT+++PL              F    
Sbjct: 863 LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                 +PD +   C       I YV++  GH+   + 
Sbjct: 922 VGSGFDLPDKECPTCN------IPYVKD--GHDIPFET 951



 Score = 67.7 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEEHRLLADETYVVFDVET 425


>gi|42782909|ref|NP_980156.1| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987]
 gi|42738836|gb|AAS42764.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus ATCC 10987]
          Length = 970

 Score =  205 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 77/398 (19%), Positives = 148/398 (37%), Gaps = 42/398 (10%)

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578 LKEVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
           +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637 RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 696 HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 753

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754 -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDVAKEIVVTNTQKIASLIGDVHPVKDDLYT 812

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813 PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL---------LFERFL 408
           LI    ++ +  +   VG  RGS   S  A  + IT+++PL              F    
Sbjct: 863 LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                 +PD +   C       + YV++  GH+   + 
Sbjct: 922 VGSGFDLPDKECPTCN------VPYVKD--GHDIPFET 951



 Score = 69.6 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIAITD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAITDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|118479040|ref|YP_896191.1| DNA polymerase III, subunit alpha [Bacillus thuringiensis str. Al
           Hakam]
 gi|118418265|gb|ABK86684.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
           Hakam]
          Length = 972

 Score =  205 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 78/398 (19%), Positives = 148/398 (37%), Gaps = 42/398 (10%)

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 580 LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 638

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
           +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 639 RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 697

Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             +   L R  G  +   S +V+L  T + P+VAT N  +L  ED     +L++      
Sbjct: 698 HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGG-- 755

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 756 -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDVAKEIVVTNTQKIASLIGDVHPVKDDLYT 814

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 815 PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 864

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL---------LFERFL 408
           LI    ++ +  +   VG  RGS   S  A  + IT+++PL              F    
Sbjct: 865 LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 923

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                 +PD +   C       I YV++  GH+   + 
Sbjct: 924 VGSGFDLPDKECPTCN------IPYVKD--GHDIPFET 953



 Score = 67.7 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 334 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 394 GVEANLVNDGVPIAYNEEHRLLADETYVVFDVET 427


>gi|324327715|gb|ADY22975.1| DNA polymerase III subunit alpha, Gram-positive type [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 970

 Score =  205 bits (521), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 78/398 (19%), Positives = 149/398 (37%), Gaps = 42/398 (10%)

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ +I    +   Q N  M             + LL ++  G + L +LVS  +L +   
Sbjct: 578 LKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFY 636

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
           +  R+  S L++   EG+++ T    G +  A    + +  E+    +        ++  
Sbjct: 637 RVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLR 695

Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             +   L R  G  +   S +V+L  T + P+VAT N  +L+ ED     +L++      
Sbjct: 696 HLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLNPEDAMYRKILVSSQGG-- 753

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIE 297
            +        P  + +   EM+  FS L E  A E  V   ++ + ++    P+      
Sbjct: 754 -ANPLNRHSLPPVHFRTTDEMLECFSFLGEDVAREIVVTNTQKIASLIGDVHPVKDDLYT 812

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            + +      ++E R+ +         +         +    RL+ EL  I    F+  +
Sbjct: 813 PKIEGA----DDETRDMSYKMARSIYGEEL------PEIVEARLEKELKSIIGHGFAVIY 862

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL---------LFERFL 408
           LI    ++ +  +   VG  RGS   S  A  + IT+++PL              F    
Sbjct: 863 LISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGS 921

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                 +PD +   C       I YV++  GH+   + 
Sbjct: 922 VGSGFDLPDKECPTCN------IPYVKD--GHDIPFET 951



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIAITD     S  E       AGI+ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAITDHAVAQSFPEAYSAGKKAGIKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N+          +V  V T
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVFDVET 425


>gi|156069315|gb|ABU44570.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069317|gb|ABU44571.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
          Length = 185

 Score =  205 bits (521), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 102/190 (53%), Positives = 132/190 (69%), Gaps = 8/190 (4%)

Query: 266 DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA- 324
           D+PEALEN+VEIA+RC+  +++    LP F  +       +E   L  K+  GLE RL  
Sbjct: 1   DIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----GMKETEFLVMKSREGLEERLEF 55

Query: 325 --QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                  +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGA
Sbjct: 56  LFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGA 115

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
           GS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + 
Sbjct: 116 GSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDA 175

Query: 443 VAQIITFGSL 452
           V+QIITFG++
Sbjct: 176 VSQIITFGTM 185


>gi|182626383|ref|ZP_02954137.1| DNA polymerase III PolC-type [Clostridium perfringens D str.
           JGS1721]
 gi|177908334|gb|EDT70882.1| DNA polymerase III PolC-type [Clostridium perfringens D str.
           JGS1721]
          Length = 391

 Score =  204 bits (519), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 149/404 (36%), Gaps = 65/404 (16%)

Query: 532 IVIGDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
           +V  D  +    P+     DV +D+  T F+   I    L+K D LG    T+L+   D 
Sbjct: 2   VVPNDNEIYNFCPIQHPADDVNTDIITTHFDYHSI-SGRLLKLDILGHDDPTVLRMLQDL 60

Query: 589 LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
                  +D   IP +D +   L T+   LG+ + E  G      G+     + +  ++ 
Sbjct: 61  TG-----LDPKTIPLNDPKVISLFTSPDALGVTKEEL-GCEVGSYGLPEFGTKFVRQMLV 114

Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVM---QIAQLLSG 704
             +P    ++V  +   +G +  ++     I       +  I  ++ +M       L   
Sbjct: 115 DTQPKSFADLVRISGLSHGTDVWLNNAQYFIKEGYTTLKDCIATRDDIMVYLMYKDLPPK 174

Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            + +  + +R+   K + E+ +              + +    + +    K   Y F K 
Sbjct: 175 TAFTIMEKVRKG--KGLSEDDEAL------------MREKNVPDWYIESCKRIKYMFPKG 220

Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK----------------------- 801
           HA AY +++ + A+ K +YP  +     T+  D+ +                        
Sbjct: 221 HAVAYVMMAVRIAYYKVYYPEAYYTTYFTVRADDFDADLICKGEEAIKAKMEELNSLGNN 280

Query: 802 ----------IKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                     I +   +  +  +  +      +    FK+ ++ I   L A++GVG   A
Sbjct: 281 ISVKEKGLLTILEISYEMYKRGLNFLKVDLYKSEATKFKIEEDGIRPPLNALQGVGDNAA 340

Query: 851 RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
           + I+E   +  F S ED   R    K+++ V+E+L   G L+  
Sbjct: 341 KSIVECRVNGEFISKEDLRLR---SKVSKTVIETLDNHGCLEGM 381


>gi|327197959|ref|YP_004306276.1| putative DNA polymerase III alpha subunit [Lactococcus phage 949]
 gi|306009279|gb|ADM73674.1| putative DNA polymerase III alpha subunit [Lactococcus phage 949]
          Length = 1429

 Score =  204 bits (519), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 93/526 (17%), Positives = 208/526 (39%), Gaps = 36/526 (6%)

Query: 380  SGAGSVTAYALTITDIDPL--RFSLLFERFLNPDRMSMPDF--DIDFCQDRRDEVIRYVQ 435
            S         L  T +D +     L   RF++  R+       D+DF     +  ++  +
Sbjct: 742  SAPSFYLNKLLDFTAVDRVNSPLKLYPTRFMSESRILEAKSLPDVDFNTANPEPFMKAQK 801

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
               G +   Q+I +G++Q K A +   R L +P ++   + + +                
Sbjct: 802  EILGEDNAYQMIAYGTMQEKDAFKTYCRGLDIPKNEYWTIAEDL---------------- 845

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
                E  +       +++ SQ+  G+    S H    ++   P+S+ + + +  +  + V
Sbjct: 846  ----ERWVKTDKWRDIIKASQQFIGVVTSFSPHPCSSLLLSDPISRKIGVIK-TKEGVDV 900

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTT 614
                    +    +K D L +    ++ K    L         L+ +  ++ + + L   
Sbjct: 901  ALIGSYDSDVYKYLKNDLLVVTVWDIIAKVCKELNIEIPDVRTLTKLVENNDKVWDLYKD 960

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
                 + Q  +   +  +   +P  + ++   V+  RP        + NR    +     
Sbjct: 961  GMVATLNQAGTPSGKPQVMQYKPQSVRELSMWVAGIRPSFASMKSYFLNR----QPFSYN 1016

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
             P  D +LK++   +++QE +M   Q  +GY       L +A+ KK K  ++   ++FI 
Sbjct: 1017 IPAFDELLKDSDNFVLFQESIMATLQ-FAGYEEDVTYGLLKAIAKKKKGIIEPIHDKFIE 1075

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            G      S+  A+ ++ ++    +YGFN SHA + A+ S   AW+K  YP+ + A  + +
Sbjct: 1076 GFVAKTGSEEQALKVWTIIENAVNYGFNSSHAYSVALDSLYGAWLKATYPLVYFAVVLNV 1135

Query: 795  EMDNVEKIKKFCQDARQFNI--QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
              ++ +K  +   +   F+I  + +    +     ++   N IY  ++ +  +    A +
Sbjct: 1136 YKNSKDKQAELINELEYFDISLKGLQFGKSKSDYSYETETNTIYKGISTVAYLNQQVADN 1195

Query: 853  IMEASADKPFDS---LEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            +   + ++ ++    ++ F   +D    + R +  L+  G    FG
Sbjct: 1196 LYNLAKERHYEKDDVIQLFLDILDGALADNRQMNILIKLGFFKEFG 1241



 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/385 (14%), Positives = 141/385 (36%), Gaps = 40/385 (10%)

Query: 10  SFVHLQVHSSYS---LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           ++ ++  HS YS     +  +S  ++  +        ++  +   + +  E  + A    
Sbjct: 8   TYQNIHSHSFYSNISTHDSVISRTDVAKRAVELGHTTLSCIEHGYMGNVFETYRIAKEFN 67

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ I G +    ++D  +          T   ++++     G + +  L+S  Y      
Sbjct: 68  LKLIFGTEFYY-VKDRFEKDR-------TNSHLLVVAKNENGKEAITGLISESYQTG-FY 118

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              RI    L  +  + +I+ T   + PI+    +     AE  +   K  FGD  ++ +
Sbjct: 119 GRNRIDEELLFSLPKDDVIVTTACIASPINLYEGY-----AEYFIPKAKAYFGDNFFLEV 173

Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           Q H    +     +++     + +P +   ++ ++ EEDY+  D+ +         ++  
Sbjct: 174 QPHWNKKQADFNEKLIGYRKKYNVPFILGVDTHYIKEEDYKMRDIYLKSRKIVYDKEEGF 233

Query: 246 PRVTPDHYLKNRSEMVSIF--------SDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
               P+        ++  F          + EA +N+  + +  + ++     +   + +
Sbjct: 234 FMDYPE-----TKTIIERFKKQNVLSDEQIIEAFDNSHVVDKFDAIVINDDIKMPSVYPD 288

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
           K     +KE+   L+              +  +     +Y   + +E++++     + YF
Sbjct: 289 K----TEKEKVKILKKHINKAWTEDRKHISKERWG---EYLDAIKYEMSIVENTHMTDYF 341

Query: 358 LIVADFIQWAKKN--NIPVGPGRGS 380
           L+    I+  K+    +    GRG 
Sbjct: 342 LMNEKIIRLGKQKYGGVLTKTGRGC 366


>gi|121592122|ref|ZP_01679085.1| DNA polymerase III alpha subunit [Vibrio cholerae 2740-80]
 gi|121546174|gb|EAX56515.1| DNA polymerase III alpha subunit [Vibrio cholerae 2740-80]
          Length = 182

 Score =  204 bits (518), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 96/186 (51%), Positives = 127/186 (68%), Gaps = 8/186 (4%)

Query: 256 NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
           + +EM  +F+D+PEAL N+VEIA+RC+  +++    LP F            E+ L  K+
Sbjct: 1   SEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKS 55

Query: 316 VAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+I
Sbjct: 56  REGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDI 115

Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
           PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI 
Sbjct: 116 PVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVID 175

Query: 433 YVQNKY 438
           +V N +
Sbjct: 176 HVANVW 181


>gi|265763455|ref|ZP_06092023.1| predicted protein [Bacteroides sp. 2_1_16]
 gi|263256063|gb|EEZ27409.1| predicted protein [Bacteroides sp. 2_1_16]
          Length = 569

 Score =  203 bits (517), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 108/459 (23%), Positives = 187/459 (40%), Gaps = 52/459 (11%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           L  +  FV+L +H+ + LL G+ SL + + K     Q A+ I D N + + L   ++  A
Sbjct: 102 LNHAQEFVNLGIHTPFELLNGSFSLTDWIKKAKYLGQSALGICDYNTMAATLILQKECEA 161

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ + G  L                         +   + EG Q L+ +   + +  +
Sbjct: 162 AGIQWVFGYSLTFTDGIEKIDAK-------------IYCQSQEGLQNLLRIQKCINVDSE 208

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY- 183
            K    I L  L + G   +I+ +  +S  +         +     L  F   F D  Y 
Sbjct: 209 NK---IIDLQDLLKHGAGNIIVFSKYASFWL---------KEIGNNLDRFFDSFDDCFYQ 256

Query: 184 VNLQRHRGYDRYRESQVVQLAYTH--------ELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           ++L   +      + +V+     +        +LP V   +  +L ++D +   +L  +A
Sbjct: 257 LDLSEFKA--ERIDIKVLDATKCYFDYIYDTGDLPPVLICDCYYLDKDDAKNKIILNKIA 314

Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFS----DLPE----ALENTVEIARRCSFILQV 287
                 Q D               M  +F     D+ +    A ENTV+IA       ++
Sbjct: 315 EGAAHEQSDDQYFKDLDEHWTT--MSGLFDEHKWDIEDIFNWACENTVKIAEGAKARYEI 372

Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
               +P++   + +  +       R++    L        + KG     YR++LD+E+ V
Sbjct: 373 ERNFMPQYDMADNEKSKYAN----RHEMFLDLLEDGFNKLVPKGKE-DIYRKQLDYEIYV 427

Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
           +       Y L+  D + WA+KN I VG GRGS  G +  Y L IT IDP+++ LLFERF
Sbjct: 428 LESTNNVDYMLVQYDTVNWARKNGILVGCGRGSAGGCLVLYLLGITLIDPIKYDLLFERF 487

Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
           L P+R  +   D+    D  D   +Y++    + +  +I
Sbjct: 488 LLPERAGLYPSDVTIIGDDVD-SNQYIEVTLENHKTYKI 525


>gi|299145849|ref|ZP_07038917.1| putative DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23]
 gi|298516340|gb|EFI40221.1| putative DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23]
          Length = 569

 Score =  202 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 109/459 (23%), Positives = 188/459 (40%), Gaps = 52/459 (11%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           L  +  FV+L +H+ + LL G+ SL + + K     Q A+ I D N + + L   ++  A
Sbjct: 102 LNHAQEFVNLGIHTPFELLNGSFSLTDWIKKAKYLGQSALGICDYNTMAATLILQKECEA 161

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ + G  L                         +   + EG Q L+ +   + +  +
Sbjct: 162 AGIQWVFGYSLTFTDGIEKIDAK-------------IYCQSQEGLQNLLRIQKCINVDSE 208

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY- 183
            K    I L  L + GT  +I+ +  +S  +         +     L  F   F D  Y 
Sbjct: 209 NK---IIDLQDLLKHGTGNIIVFSKYASFWL---------KEIGNNLDRFFDSFDDCFYQ 256

Query: 184 VNLQRHRGYDRYRESQVVQLAYTH--------ELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           ++L   +      + +V+     +        +LP V   +  +L ++D +   +L  +A
Sbjct: 257 LDLSEFKA--ERIDIKVLDATKCYFDYIYDTGDLPPVLICDCYYLDKDDAKNKIILNKIA 314

Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFS----DLPE----ALENTVEIARRCSFILQV 287
                 Q D               M  +F     D+ +    A ENTV+IA       ++
Sbjct: 315 EGAAHEQSDDQYFKDLDEHWTT--MSGLFDEHKWDIEDIFNWACENTVKIAEGAKARYEI 372

Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
               +P++   + +  +       R++    L        + KG     YR++LD+E+ V
Sbjct: 373 ERNFMPQYDMADNEKSKYAN----RHEMFLDLLEDGFNKLVPKGKE-DIYRKQLDYEVYV 427

Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
           +       Y L+  D + WA+KN I VG GRGS  G +  Y L IT IDP+++ LLFERF
Sbjct: 428 LESTNNVDYMLVQYDTVNWARKNGILVGCGRGSAGGCLVLYLLGITLIDPIKYDLLFERF 487

Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
           L P+R  +   D+    D  D   +Y++    + +  +I
Sbjct: 488 LLPERAGLYPSDVTIIGDDVD-SNQYIEVTLENHKTYKI 525


>gi|156902002|gb|ABU96794.1| DNA polymerase III alpha subunit [Vibrio cholerae]
 gi|295848033|gb|ADG44928.1| DNA polymerase III alpha subunit [Vibrio cholerae]
 gi|295848037|gb|ADG44930.1| DNA polymerase III alpha subunit [Vibrio cholerae]
          Length = 179

 Score =  202 bits (514), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 96/184 (52%), Positives = 125/184 (67%), Gaps = 8/184 (4%)

Query: 263 IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
           +F+D+PEAL N+VEIA+RC+  +++    LP F            E+ L  K+  GLE R
Sbjct: 1   LFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEER 55

Query: 323 LA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
           L         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRG
Sbjct: 56  LEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRG 115

Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
           SGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG
Sbjct: 116 SGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYG 175

Query: 440 HERV 443
            + V
Sbjct: 176 RDAV 179


>gi|213420366|ref|ZP_03353432.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 192

 Score =  200 bits (510), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 90/192 (46%), Positives = 131/192 (68%), Gaps = 12/192 (6%)

Query: 584 KSLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            +L+ + +R        +D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPD
Sbjct: 1   WALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPD 60

Query: 639 CIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIY 691
           C ED+IALV+L+RPGP+ + +   + +RK+G+E++        H  + P+L+ T G+I+Y
Sbjct: 61  CFEDMIALVALFRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILY 120

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
           QEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+
Sbjct: 121 QEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFD 180

Query: 752 LLAKFADYGFNK 763
           L+ KFA YGFNK
Sbjct: 181 LVEKFAGYGFNK 192


>gi|331014281|gb|EGH94337.1| error-prone DNA polymerase [Pseudomonas syringae pv. lachrymans str.
            M302278PT]
          Length = 307

 Score =  200 bits (510), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 97/273 (35%), Gaps = 30/273 (10%)

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +A+++Y + W+K H P  F  A +           +  QDAR+ +I+I P  V     D 
Sbjct: 1    FALLTYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSHWDC 60

Query: 829  KVGDN---------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
             +             I   L  ++      A  I  A + +PF    D   R     L+ 
Sbjct: 61   TLEPLDHPDSTRNLAIRLGLRMLRSFREEDALRIEAARSKRPFADATDLAQRA---GLDS 117

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R  E+L  +GAL      R +    +  +                 +F  +  +   ++T
Sbjct: 118  RAAEALADSGALRGLIGHRHRARWEVAGV------------EAQRPLF-DDVTSEEVQVT 164

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
            L   +V   +     +   LG     HPL + +  L     +  ++ +       + +A 
Sbjct: 165  LPLPTV---AEDLVADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLTLENNRTLSVAG 221

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V+ +Q+  T  G  + +VT  +         +
Sbjct: 222  LVIGRQRPGTASG--VTFVTLEDEFGMVNVVVW 252


>gi|295848035|gb|ADG44929.1| DNA polymerase III alpha subunit [Vibrio cholerae]
          Length = 178

 Score =  200 bits (509), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 96/183 (52%), Positives = 124/183 (67%), Gaps = 8/183 (4%)

Query: 264 FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
           F+D+PEAL N+VEIA+RC+  +++    LP F            E+ L  K+  GLE RL
Sbjct: 1   FADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERL 55

Query: 324 A---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                    +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGS
Sbjct: 56  EFLFPDPDVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGS 115

Query: 381 GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
           GAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG 
Sbjct: 116 GAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGR 175

Query: 441 ERV 443
           + V
Sbjct: 176 DAV 178


>gi|23006744|ref|ZP_00048923.1| COG0587: DNA polymerase III, alpha subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 227

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 94/218 (43%), Positives = 123/218 (56%), Gaps = 6/218 (2%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           K   FVHL VHSSYSLLEG +   +++   AAD+QPA+A+TDTNNLF ALEFS+ A  AG
Sbjct: 6   KEVGFVHLHVHSSYSLLEGGVKAGDLVKAAAADRQPALALTDTNNLFGALEFSEYAAKAG 65

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           IQPI G QL I  +         + P     +IVLL     GY  L+ L SR Y      
Sbjct: 66  IQPIAGIQLTICFE---APDPMARLPQAGCGNIVLLAQDETGYGNLLRLGSRAYFDGALG 122

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
           +  R+ +S L E   +G+I LTGG +GP+D +        A KRL   K  F  +RLYV 
Sbjct: 123 EPPRVAVSAL-EGAVDGVIALTGGLTGPLDTSLRAGRHDQAAKRLEFLKSAFGEERLYVE 181

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
           +QRH    +R  E ++++LA +H L +VATN   F   
Sbjct: 182 IQRHGLADERAVERELLRLADSHGLGIVATNEPYFAKP 219


>gi|324014113|gb|EGB83332.1| hypothetical protein HMPREF9533_01825 [Escherichia coli MS 60-1]
          Length = 164

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 92/163 (56%), Positives = 124/163 (76%), Gaps = 7/163 (4%)

Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKET 685
           + +QPDC ED+IALV+L+RPGP+ + +   + +RK+G+E+I        H  + P+L+ T
Sbjct: 1   KRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPT 60

Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
            G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +
Sbjct: 61  YGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAEL 120

Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
           A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+
Sbjct: 121 AMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 163


>gi|156902006|gb|ABU96796.1| DNA polymerase III alpha subunit [Vibrio cholerae]
          Length = 177

 Score =  198 bits (503), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 95/181 (52%), Positives = 123/181 (67%), Gaps = 8/181 (4%)

Query: 264 FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
           F+D+PEAL N+VEIA+RC+  +++    LP F            E+ L  K+  GLE RL
Sbjct: 1   FADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERL 55

Query: 324 A---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                    +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGS
Sbjct: 56  EFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGS 115

Query: 381 GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
           GAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG 
Sbjct: 116 GAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGR 175

Query: 441 E 441
           +
Sbjct: 176 D 176


>gi|94502355|ref|ZP_01308822.1| DNA polymerase III alpha subunit [Candidatus Sulcia muelleri str.
           Hc (Homalodisca coagulata)]
 gi|94451087|gb|EAT14045.1| DNA polymerase III alpha subunit [Candidatus Sulcia muelleri str.
           Hc (Homalodisca coagulata)]
          Length = 511

 Score =  198 bits (503), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 74/283 (26%), Positives = 126/283 (44%), Gaps = 24/283 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------- 63
           + H+  H+S+S+L     +N+++ K       A+ ITD  N+     F  +         
Sbjct: 236 YSHIHNHTSFSILSSTXDINSLIKKTIEYDMDAVGITDYGNMMGVFNFINRIKNINDNFL 295

Query: 64  -AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               I+PIIGC+L I   D +K T++       + + V       GY  L +L S  ++ 
Sbjct: 296 VKKKIKPIIGCELYISYNDLIKKTDK-------IYNQVFFAKNKNGYYNLSKLCSHGFID 348

Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                   I  + L E     LI ++G  +  I           AEK    +  LFGD  
Sbjct: 349 GYYSGIPIIGKN-LVEKYKANLIAVSGDLNSEIPFTILNKGENEAEKVFKWWHNLFGDDF 407

Query: 183 YVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           Y+ + RH   +    +Q +++ +    +  +  NN+ +LS++DY AHD+L+ V +S   S
Sbjct: 408 YIEILRHGLKEEDHVNQILLKFSKKFNVKFIPQNNNFYLSQKDYHAHDILLCVKNSQKQS 467

Query: 242 QK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
                           + Y KN+++M ++FSDLPEA +N  E+
Sbjct: 468 TPIGKGRGFRFGFPNQEFYFKNKNQMYNLFSDLPEAFDNLKEL 510


>gi|32481340|gb|AAP84017.1| catalase [Vibrio cholerae]
          Length = 178

 Score =  197 bits (501), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 95/183 (51%), Positives = 123/183 (67%), Gaps = 8/183 (4%)

Query: 272 ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAI 328
            N+VEIA+RC+  +++    LP F            E+ L  K+  GLE RL        
Sbjct: 1   ANSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPE 55

Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
            +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AY
Sbjct: 56  VRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAY 115

Query: 389 ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
           AL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + V+ IIT
Sbjct: 116 ALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSHIIT 175

Query: 449 FGS 451
           FG+
Sbjct: 176 FGT 178


>gi|57867461|ref|YP_189103.1| DNA polymerase III, alpha subunit, truncation [Staphylococcus
           epidermidis RP62A]
 gi|57638119|gb|AAW54907.1| DNA polymerase III, alpha subunit, truncation [Staphylococcus
           epidermidis RP62A]
          Length = 482

 Score =  197 bits (500), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 92/478 (19%), Positives = 166/478 (34%), Gaps = 77/478 (16%)

Query: 14  LQVHSSYS---LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           L  H+ +S   +++   S   +L   +      +AIT+  +L SA++  Q+  +   Q I
Sbjct: 8   LHNHTMFSNFRIIDAITSPKELLTTASKLGYNGLAITEHESLSSAVQMIQELKSLKEQNI 67

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTV--------PSIVLLVSTAEGYQRLIELVSRMYLL 122
           +     + + + + + +  +              P  +L+    +G++ L +L S  +  
Sbjct: 68  VDESFKLVLGNEIYLVDSLEEVRDNYVGGGVTKFPHFILMAKNRKGFEALSKLSSEAWKN 127

Query: 123 DQGKQ---SVRICLSWLQ-----EIGTEGLIMLTGGSSGPID---------------RAF 159
                          +L+     E     ++  T      ++                  
Sbjct: 128 SFFTGLMERTPTTKDFLRSVATSEEYKGTIMATTACIGSSVNIQLQKMKAAEENGSSSEE 187

Query: 160 FFNSSQVAEKRLLTFKKLF-GDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNS 217
             N    A K L    + F  D  YV LQ      +      +V LA    L  +  N++
Sbjct: 188 IANCYNAARKELHWCIETFGKDDFYVELQPAESEVQIYCNKHLVNLANETGLKCIVANDT 247

Query: 218 LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL-----PEALE 272
            +   ED + H V +          ++        Y+ +  EM    S L      EA++
Sbjct: 248 HYARPEDRDVHRVFLNSKEG----DREVDEFYYYCYMHSIDEMKKQMSYLSEEIIEEAIK 303

Query: 273 NTVEIARRCSFILQVHAPILPRFIEKECD-------------------DIQKEEENELRN 313
           NT +I  +       H  I+P+    E +                   +  K ++  L  
Sbjct: 304 NTEKIYDKVEVYDINHTSIIPKSTIPEFELSHIFSKAYDTYEHIKYLANSDKVDDQYLLY 363

Query: 314 KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA------RMKFSGYFLIVADFIQWA 367
               G    L    I +    Q   +R+D EL+ I           S Y+L   + +   
Sbjct: 364 LIEKGYFKELHYKGIGRKEFHQ-ILKRIDDELSEIIGISHKLNQTMSSYYLTCREIVNIM 422

Query: 368 KKNN-----IPVGPGRGSGAGSVTAYALTITDIDPLRF-SLLFERFLNPDRMSMPDFD 419
            K++       VG GRGSGAG +  Y L IT I+PL++ +L   R L  +R  +P   
Sbjct: 423 WKDDECGGNSLVGSGRGSGAGFLLNYLLGITQINPLKYNNLPHWRHLTKERPELPKMI 480


>gi|32481348|gb|AAP84021.1| catalase [Vibrio cholerae]
          Length = 177

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 96/182 (52%), Positives = 123/182 (67%), Gaps = 8/182 (4%)

Query: 271 LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGA 327
           L N+VEIA+RC+  +++    LP F            E+ L  K+  GLE RL       
Sbjct: 1   LANSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDP 55

Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
             +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ A
Sbjct: 56  EVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVA 115

Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
           YAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + V+QII
Sbjct: 116 YALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQII 175

Query: 448 TF 449
           TF
Sbjct: 176 TF 177


>gi|309808831|ref|ZP_07702716.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
 gi|308167957|gb|EFO70090.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
          Length = 946

 Score =  194 bits (492), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 138/359 (38%), Gaps = 49/359 (13%)

Query: 93  FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                 + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   
Sbjct: 594 RAKPNHMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQ 651

Query: 153 GPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-----VVQLAY 205
           G +  +          +  R+  F ++     Y +L   +     +E Q     + +L  
Sbjct: 652 GDVFISMMQKGYDATREKARIYDFLEVQPPATYQHLLDDKLIKDKKELQEIITNIYKLGK 711

Query: 206 THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
              +P+VAT+++ ++ ++D     +L++       + + +    PD +     EM+  FS
Sbjct: 712 ELGIPVVATSDAHYIDKKDAIYRKILLSAQ----KANRGKNYELPDLHFYTTQEMLDAFS 767

Query: 266 DL------PEALENTVEIARRCSFILQVHAPILPRFIE---KECDDIQKEEENELRNKAV 316
            L         ++NT  IA +   +  + + + P  IE   KE + +  ++ +EL     
Sbjct: 768 FLDPKIAEEIVIKNTNMIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHELYG--- 824

Query: 317 AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                             +  + RL++EL  I    ++  +LI    +  + K+   VG 
Sbjct: 825 --------------NPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG- 869

Query: 377 GRGSGAGSVTAYALTITDIDPL---------RFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            RGS   S+ A    IT+++PL         ++S  FE+        +PD     C   
Sbjct: 870 SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCNAD 928



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 321 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 380

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++     L + N     +     ++  V T
Sbjct: 381 GYEANMINDQALLVLNPANMDYRGQEYVIFDVET 414


>gi|165928506|ref|ZP_02224338.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165919458|gb|EDR36814.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. F1991016]
          Length = 405

 Score =  193 bits (491), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 99/326 (30%), Positives = 151/326 (46%), Gaps = 65/326 (19%)

Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
           G++P   + ++A  +L+RPGPI + +   Y +   G     S+HP++D +  ET GVI+Y
Sbjct: 3   GIEPMSFKTVVATTALFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDELTAETNGVILY 62

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS--------- 742
           QEQ M   +LL+G++++EAD +R+A+GKK  E+M    E+F+  A    I          
Sbjct: 63  QEQTMNATRLLAGFTMAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWIDVEMEDGTTQ 122

Query: 743 -------------------------------------------KTIAVNIFELLAKFADY 759
                                                      +T A  I++   K   Y
Sbjct: 123 RIHRAEHFKCEDGALRTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEIWDAFEKNGAY 182

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            FNKSH  AY++ISYQ+ W+KTHYP EF AA++T+     +K +   +DA  + I ++PP
Sbjct: 183 QFNKSHPVAYSLISYQSMWLKTHYPAEFFAAALTI--LGEDKHQGLVKDALTYGIHVLPP 240

Query: 820 SVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRV 872
            VN      ++     G   +Y   +A+KG      + IM A       F+SLE F   V
Sbjct: 241 DVNVSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGCQAIMRAREKVGGKFESLEQFEEAV 300

Query: 873 DSK--KLNRRVLESLVFAGALDCFGY 896
           + +    N RV ESL   GA      
Sbjct: 301 EKRACACNSRVRESLQKVGAFASIEP 326


>gi|196234155|ref|ZP_03132988.1| DNA-directed DNA polymerase [Chthoniobacter flavus Ellin428]
 gi|196221806|gb|EDY16343.1| DNA-directed DNA polymerase [Chthoniobacter flavus Ellin428]
          Length = 340

 Score =  193 bits (491), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 116/310 (37%), Gaps = 24/310 (7%)

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M+    +      + G S  +   + + +  FA YGF +SHA ++A+++Y +AW K H  
Sbjct: 1    MNAACAKLRKRMKEKGHSDEVTELVVKSVQSFAVYGFPESHAISFALLAYASAWYKVHRA 60

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIK 843
             EF A+ +  +           +DA++  +  +P SV     +  V  D+ +   L  + 
Sbjct: 61   PEFYASLLNNQPMGFYSSATLIKDAQRRGLHFLPVSVCESEWNCTVIDDSTVRLGLCVVN 120

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            G+    A H++     +PF S+ DF  R    K  +R L  +   GAL      R   L 
Sbjct: 121  GLRQEHAAHLLLERMRQPFTSVADFNLRTKLTKPEQRTLARI---GALSGLSAHRRDALW 177

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             ++                 E++FA                   S  R   +   +    
Sbjct: 178  QVELPFDS------------ESLFAKPATPPPTTPLA----PMTSWERMHADHSGMNLSI 221

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
              HP+ + +  + +       +      G  +++A  V+ +Q+  T KG    +++  + 
Sbjct: 222  GKHPMRLLRDRVPQ--AWRAADLAQGANGTYVQIAGQVICRQRPGTAKG--FVFISLEDE 277

Query: 1024 AKEYEANFFP 1033
                 A   P
Sbjct: 278  TGVANAIVVP 287


>gi|289673966|ref|ZP_06494856.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae FF5]
          Length = 200

 Score =  193 bits (490), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 11/205 (5%)

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD--PSVDRLLEISQKLEGLYRHAST 527
            Q++ L +             ++    R RE       P + R+L ++ +L G  RH S 
Sbjct: 1   DQINALAEAFSRWS------DSLPSPERLREYGFDADTPILKRVLALTGELIGFPRHLSQ 54

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           H  G VI + PL  LVP+     +D  + Q++   ++  GL+K D L L  L+ L+++ D
Sbjct: 55  HPGGFVISEHPLETLVPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFD 114

Query: 588 FLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            +   RG +  L+ +P DD +TY +++   T+G+FQ+ES      L  ++P+   D++  
Sbjct: 115 LVHLHRGQRWTLATLPGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIE 174

Query: 647 VSLYRPGPI--DNIVVYNNRKNGKE 669
           V++ RPGPI  D +  Y  R+NG+E
Sbjct: 175 VAIVRPGPIQGDMVHPYLRRRNGEE 199


>gi|169344082|ref|ZP_02865068.1| DNA polymerase III subunit alpha [Clostridium perfringens C str.
           JGS1495]
 gi|169297817|gb|EDS79914.1| DNA polymerase III subunit alpha [Clostridium perfringens C str.
           JGS1495]
          Length = 166

 Score =  193 bits (490), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 101/158 (63%), Gaps = 3/158 (1%)

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           + FC + R  VI YV  KYGH+ V+QIITFG++ A+A +RDVGRA+   Y++VDR+ K I
Sbjct: 11  LYFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMNYTYAEVDRIAKQI 70

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
           P      +  +A+  +   +     +  V  L+++S++LEGL RH+STHAAG+VI  +PL
Sbjct: 71  PTVLGVTID-KALDLNPELKTIYDTEERVRELIDVSRRLEGLPRHSSTHAAGVVIASQPL 129

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            + VP+ +    +  VTQF+M  +E+ GL+K D   +K
Sbjct: 130 VEYVPLQK--NDESIVTQFDMTTLEELGLLKMDVRNVK 165


>gi|222083244|ref|YP_002542647.1| DNA polymerase III alpha chain [Agrobacterium vitis S4]
 gi|221738624|gb|ACM39462.1| DNA polymerase III alpha chain [Agrobacterium vitis S4]
          Length = 363

 Score =  192 bits (488), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 104/267 (38%), Gaps = 17/267 (6%)

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +I+Y ++W+K  +P  F AA +  +        +  +DA++ ++ I P  +N    D  +
Sbjct: 7    LIAYASSWLKCWHPDVFCAALLNAQPMGFYAPAQIVRDAQKHHVVIRPVCINASRWDCTL 66

Query: 831  -----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                 G   +      +KG+       I+ A  D+PF+S++D   R +    +   L  L
Sbjct: 67   EPTEDGRFAVRLGFRMVKGLANKHGAAIVAAREDQPFESIDDLWRRANVPSAS---LVQL 123

Query: 886  VFAGAL-DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
              A A       +R + L +++ ++     +      + +   A         + L+  +
Sbjct: 124  AEADAFQPGLKLARREALWAIEALRDEPLPLFAAAAAREQ---AVIPEAIEPVVALKPMT 180

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V    +   +G     HPL   +  L K  I   E+++    G  +  A +V+ +
Sbjct: 181  SGGEVV---EDYSHVGLTLRAHPLSFLRNDLTKRRIVTCEDAMNARDGKWLEAAGLVLVR 237

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            Q+  + KG  + ++T  +         
Sbjct: 238  QRPGSAKG--VMFITIEDETSHANLVV 262


>gi|77414701|ref|ZP_00790833.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae 515]
 gi|77159245|gb|EAO70424.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae 515]
          Length = 1036

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 151/438 (34%), Gaps = 78/438 (17%)

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
            M+ N K+  +       +    + V    G + + +LVS   +    +   RI  S L +
Sbjct: 603  MELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVSLSNVK-YFEGVARIPRSVL-D 660

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYD--- 193
               EGL++ T  S G +  A   N    A      +   ++    +Y  L          
Sbjct: 661  AHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYDFIEVMPPAIYRPLVVRDLIKDEV 720

Query: 194  --RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKD 244
              +     ++++    + P++AT N  ++  ED    +++         +  +    +  
Sbjct: 721  GIQQIIRDLIEVGRRLDKPVLATGNVHYIEPEDEIYREIIVRSLGQGAMINRTIGRGEDA 780

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            +P   P  + +  +EM+  F+ L + L   + +    +F  +                  
Sbjct: 781  QPAPLPKAHFRTTNEMLDEFAFLGKDLAYEIVVTNTNTFADRFED--------------V 826

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGYFL 358
            +  + +L    V   E R+A+   AK +             R++ EL  I    F+  +L
Sbjct: 827  EVVKGDLYTPFVDRAEERVAELTYAKAFEIYGNPLPDIIDLRIEKELASILGNGFAVIYL 886

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF------------------ 400
                 +Q + +    VG  RGS   S  A  + IT+++P+                    
Sbjct: 887  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSC 945

Query: 401  -----------------------SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  D +      V++ 
Sbjct: 946  GSGYDLPNKNCPKCGTLYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDI 1005

Query: 438  YGHERVAQIITFGSLQAK 455
            +G E   +  T G++  K
Sbjct: 1006 FGEEYAFRAGTVGTVAEK 1023



 Score = 77.7 bits (190), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +      V    H++ S ++   ++ +++D  A    PAIAITD  N+ S      +A  
Sbjct: 337 MPADQKRVEFHAHTNMSTMDALPTVESLIDTAAKWGHPAIAITDHANVQSFPHGYHRAKK 396

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 397 AGIKAIF 403


>gi|32481336|gb|AAP84015.1| catalase [Vibrio cholerae]
          Length = 175

 Score =  192 bits (487), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 95/180 (52%), Positives = 122/180 (67%), Gaps = 8/180 (4%)

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAK 330
           +VEIA+RC+  +++    LP F            E+ L  K+  GLE RL         +
Sbjct: 1   SVEIAKRCNVPVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVR 55

Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL
Sbjct: 56  AKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYAL 115

Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
            ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + V+QIITFG
Sbjct: 116 KITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQIITFG 175


>gi|312796989|ref|YP_004029911.1| DNA polymerase III alpha subunit [Burkholderia rhizoxinica HKI 454]
 gi|312168764|emb|CBW75767.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia
           rhizoxinica HKI 454]
          Length = 262

 Score =  190 bits (484), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 75/257 (29%), Positives = 119/257 (46%), Gaps = 8/257 (3%)

Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGA 736
           +   L  T GV I+QEQVMQ+A L +G++  EAD LRRAM   + +  +++  ER + G 
Sbjct: 1   MRTALARTLGVPIFQEQVMQVAMLAAGFTAGEADQLRRAMAAWRSQGGLEQYYERIVHGM 60

Query: 737 SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
              G  +  A +IF  +  F +YGF +SHAA++A++ Y +AW+K H    FL A +  + 
Sbjct: 61  VTRGYDRAFAESIFAQIRGFGEYGFPESHAASFALLVYVSAWLKCHASAVFLCALLNSQP 120

Query: 797 DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----RIYYSLAAIKGVGTTTARH 852
                  +  QDAR+  ++++P  V     D  +  +     +   L+ I+G+    A  
Sbjct: 121 MGFYTPSQLVQDARRHGVEVLPVDVTVSDWDSTLQGHILDAPVRLGLSLIRGLAEDAAAR 180

Query: 853 IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
           I  A A +PF  + D   R       RR L++L  A AL     +R   L          
Sbjct: 181 IELARAVRPFADVTDLARRAQLT---RRDLQALASANALASLAGNRRAALWHALAAVPDK 237

Query: 913 QWVEKNRTNKHENIFAH 929
             +     +     FA 
Sbjct: 238 DLLRATSDDDATPAFAA 254


>gi|32481334|gb|AAP84014.1| catalase [Vibrio cholerae]
          Length = 174

 Score =  190 bits (484), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 93/179 (51%), Positives = 120/179 (67%), Gaps = 8/179 (4%)

Query: 272 ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAI 328
            N+VEIA+RC+  +++    LP F            E+ L  K+  GLE RL        
Sbjct: 1   ANSVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPE 55

Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
            +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AY
Sbjct: 56  VRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAY 115

Query: 389 ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
           AL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + V+QII
Sbjct: 116 ALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQII 174


>gi|309807955|ref|ZP_07701883.1| PHP domain protein [Lactobacillus iners LactinV 01V1-a]
 gi|308168806|gb|EFO70896.1| PHP domain protein [Lactobacillus iners LactinV 01V1-a]
          Length = 335

 Score =  190 bits (484), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 81/351 (23%), Positives = 153/351 (43%), Gaps = 28/351 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6   LQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
           Q          +   G         ++++     GYQ ++ L S + L  + GK+ + + 
Sbjct: 66  Q----------LRINGLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
           L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
               Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +       +  
Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDVFLQEVLQSIDDNQSIRDGYELTLKH 233

Query: 250 -PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +HYLK + ++   ++ L   EAL NT ++    +  ++   P LP+FI+ + D     
Sbjct: 234 VGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD----T 289

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               L + A+ GL+ +       K      Y  RL +EL +I  M F+ YF
Sbjct: 290 SYEFLHHLAMTGLQAKF-----NKHDIPAKYLNRLKYELKIIDEMGFNDYF 335


>gi|213422542|ref|ZP_03355607.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 149

 Score =  190 bits (483), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/150 (44%), Positives = 96/150 (64%), Gaps = 1/150 (0%)

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 1   FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 60

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
           DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 61  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 119

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
             P+Y D     PVTQF+   +E AGL+KF
Sbjct: 120 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKF 149


>gi|325524834|gb|EGD02791.1| error-prone DNA polymerase [Burkholderia sp. TJI49]
          Length = 266

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 102/259 (39%), Gaps = 7/259 (2%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  L   S++S L GA     ++++        +AITD  +L  A      A AAG+ 
Sbjct: 9   PAYAELFCRSNFSFLHGASHAEELVERAVKLGYRGLAITDECSLAGAPRMHVAAQAAGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG   ++   +       G  P P    +VLL    EGY  L EL+S   +    K +
Sbjct: 69  LIIGSYFEVTPDE----APPGHDPGPGAFGLVLLAQNREGYGNLSELISWRRMA-APKGT 123

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
            ++    L     E   +        I    +   + V + ++  F+  FG+R  + L Q
Sbjct: 124 YQLTPRMLSRPPEEFAHLRGMPDCFAILVPVYPVRADVLDAQVAWFRATFGERARLGLVQ 183

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  D  +  ++        + +VA  +            DV+ A+     VS+     
Sbjct: 184 LQRALDGPQRDEIRAAGARRGVRVVALGDVTMHRRSCKPLQDVMTAIRVGMPVSECGYAL 243

Query: 248 V-TPDHYLKNRSEMVSIFS 265
               + +L++R+ +  +FS
Sbjct: 244 APNAEQHLRSRARIAKLFS 262


>gi|255520144|ref|ZP_05387381.1| DNA polymerase III (alpha subunit) DnaE [Listeria monocytogenes FSL
            J1-175]
          Length = 329

 Score =  185 bits (471), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 105/220 (47%), Gaps = 7/220 (3%)

Query: 816  IMPPSVNTPCVDFKVGDNRI-YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
            ++ PS+N     F+V +     YS   I+ V T     I+      PF    DFC R+  
Sbjct: 1    MLAPSINHSNYYFQVENESSIRYSFRVIRKVPTKFILEIINERKKAPFRDFFDFCERMPH 60

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+FA +    
Sbjct: 61   KMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLFAEDDDFL 118

Query: 935  SD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
               K    K +  +   + E E+   G Y S HP+  Y+  L+ + I       +   G 
Sbjct: 119  KKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANLSS---GK 175

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 176  NYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 215


>gi|267798807|gb|ACY79084.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798809|gb|ACY79085.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798815|gb|ACY79088.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798817|gb|ACY79089.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798819|gb|ACY79090.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798821|gb|ACY79091.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798823|gb|ACY79092.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798825|gb|ACY79093.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798827|gb|ACY79094.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798829|gb|ACY79095.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798831|gb|ACY79096.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798833|gb|ACY79097.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798835|gb|ACY79098.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798837|gb|ACY79099.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798839|gb|ACY79100.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 203

 Score =  185 bits (469), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 66/212 (31%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
           N  +F++EE +EAH++ +A+     +    RP
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRP 201


>gi|156902008|gb|ABU96797.1| DNA polymerase III alpha subunit [Vibrio cholerae]
          Length = 170

 Score =  184 bits (468), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 90/175 (51%), Positives = 117/175 (66%), Gaps = 8/175 (4%)

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAK 330
           +VEIA+RC+  +++    LP F            E+ L  K+  GLE RL         +
Sbjct: 1   SVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVR 55

Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL
Sbjct: 56  AKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYAL 115

Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
            ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + V+Q
Sbjct: 116 KITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQ 170


>gi|156901996|gb|ABU96791.1| DNA polymerase III alpha subunit [Vibrio cholerae]
 gi|156901998|gb|ABU96792.1| DNA polymerase III alpha subunit [Vibrio cholerae]
 gi|156902000|gb|ABU96793.1| DNA polymerase III alpha subunit [Vibrio cholerae]
          Length = 168

 Score =  182 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 89/173 (51%), Positives = 115/173 (66%), Gaps = 8/173 (4%)

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 1   EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 55

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL I
Sbjct: 56  RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKI 115

Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
           TD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + V+Q
Sbjct: 116 TDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQ 168


>gi|267798813|gb|ACY79087.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 203

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 65/212 (30%), Positives = 103/212 (48%), Gaps = 12/212 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
           N  +F++EE +EAH++ + +     +    RP
Sbjct: 170 NEVVFITEESFEAHEIQVPIHDGYTLEDPRRP 201


>gi|156902004|gb|ABU96795.1| DNA polymerase III alpha subunit [Vibrio cholerae]
          Length = 166

 Score =  181 bits (459), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 88/171 (51%), Positives = 113/171 (66%), Gaps = 8/171 (4%)

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP F            E+ L  K+  GLE RL         +  
Sbjct: 1   EIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 55

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL I
Sbjct: 56  RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKI 115

Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
           TD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + V
Sbjct: 116 TDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAV 166


>gi|267798811|gb|ACY79086.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 203

 Score =  180 bits (458), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 65/212 (30%), Positives = 103/212 (48%), Gaps = 12/212 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD   L   ++F   A   G++PIIG             T Q +     
Sbjct: 1   VAAMGMPAMALTDFTILCGLVKFYSTAHNCGVKPIIGA----------DFTLQSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
           N  +F++EE +EAH++ +A+     +    RP
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRP 201


>gi|163787272|ref|ZP_02181719.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium ALC-1]
 gi|159877160|gb|EDP71217.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium ALC-1]
          Length = 336

 Score =  180 bits (457), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 80/205 (39%), Gaps = 11/205 (5%)

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GY 896
            + AIKGVG    + I+E    D  + S+ D   R+D +  N++  E L  AG  DC+   
Sbjct: 1    MGAIKGVGHGAVKTIVEGRKEDGHYKSIFDLAKRIDLRAANKKAFEGLANAGGFDCWPDT 60

Query: 897  SRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
             R Q           L+   KY    ++N  +   ++F         +  +       + 
Sbjct: 61   HRAQYFSHDGDGITFLEKAVKYGAKHQENENSAQISMFGAASDVQIAEPIVPPCEDWGTM 120

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQK 1007
             +   E+ V+G Y SGHPLD +K  ++            + ++    +    +V   Q +
Sbjct: 121  EKLSREKEVVGIYISGHPLDDFKIEMKTFCNGNIALFNDLNSVLNREVTFGGVVTDVQHR 180

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             +++G      T  +    +E   F
Sbjct: 181  VSKQGKGWALFTIEDYTDSFEFRIF 205


>gi|325663120|ref|ZP_08151570.1| hypothetical protein HMPREF0490_02311 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470574|gb|EGC73804.1| hypothetical protein HMPREF0490_02311 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 182

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/179 (40%), Positives = 107/179 (59%), Gaps = 8/179 (4%)

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           +  I ++D      + T  T G+FQLES+GM+  ++ ++P  +EDIIA +SLYRPGP+D 
Sbjct: 1   MGEIDYNDKLVLDSIGTGKTDGVFQLESAGMKNFMKELKPQSLEDIIAGISLYRPGPMDF 60

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           I  Y   KN K  I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM
Sbjct: 61  IPQYIKGKNDKGSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAM 120

Query: 718 GKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            KK  + M+++++ F+         G   NGI +  A  I++ +  FA Y FNK    +
Sbjct: 121 SKKKADVMERERQSFVYGNIDEGVPGCLNNGIDEKTANKIYDEMIDFAKYAFNKCSTRS 179


>gi|320096511|ref|ZP_08027909.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319976701|gb|EFW08501.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 194

 Score =  179 bits (453), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 72/202 (35%), Positives = 100/202 (49%), Gaps = 10/202 (4%)

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
           +IAR  +F L++ AP LPR             ++ L   A  G   R      + G    
Sbjct: 3   DIAREAAFDLRLVAPRLPRTRVP----GGHTPDSWLARLAHEGARERYGDRGESPGAWRT 58

Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
                +D EL VIA + F+GYFLIV + + +     I +  GRGS A S   Y L IT +
Sbjct: 59  -----IDHELEVIASLGFAGYFLIVKEIVDFCSARGI-LCQGRGSAANSAVCYCLGITAV 112

Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
           D +R  LLFERFL+  R   PD DID    RR+EVI++V + YG  R AQ+    + + +
Sbjct: 113 DAVRHQLLFERFLSSARSGPPDIDIDIESGRREEVIQHVYDAYGRHRAAQVANVITYRPR 172

Query: 456 AALRDVGRALQMPYSQVDRLCK 477
           +A+RD  RAL     Q     +
Sbjct: 173 SAIRDAARALGHSQGQAAAWSR 194


>gi|218659790|ref|ZP_03515720.1| DNA polymerase III subunit alpha [Rhizobium etli IE4771]
          Length = 248

 Score =  177 bits (448), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/150 (42%), Positives = 92/150 (61%), Gaps = 2/150 (1%)

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            ++FAGA DCFG  R QL   LD I  YAQ  ++N+ +   +IF     +  +KI L  FS
Sbjct: 1    MIFAGAFDCFGTDRAQLSAGLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKIALPPFS 60

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVV 1002
               +S R   E +VLGFY + HPLD Y  IL+KM ++ + E  A I+   +N RLA  V+
Sbjct: 61   PWLASERLLKEFQVLGFYLTAHPLDSYSNILQKMRVQTFAEFSAAIKQGASNARLAGTVI 120

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            SKQ++KTR G+++G + FS+ + ++EA  F
Sbjct: 121  SKQERKTRTGNKMGIIVFSDSSGQFEAVLF 150


>gi|207109660|ref|ZP_03243822.1| DNA polymerase III subunit alpha [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 168

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 99/167 (59%), Gaps = 2/167 (1%)

Query: 496 SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLP 554
            + +E   ++    ++ E S  LE L R+A  HAA +V+   + L    P++   ++   
Sbjct: 1   PKIKELVESNELAKQVWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGI 60

Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLT 613
           VTQ++MK++E   LIKFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + 
Sbjct: 61  VTQYSMKYLEPVDLIKFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQ 120

Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
           +  T+GIFQ+ES   +   + ++P   EDIIA+++L RPGP+++ +V
Sbjct: 121 SGDTVGIFQIESGMFQGLNKRLRPSSFEDIIAIIALGRPGPMESGMV 167


>gi|167948888|ref|ZP_02535962.1| DNA polymerase III, alpha subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 158

 Score =  175 bits (443), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 92/140 (65%), Positives = 104/140 (74%)

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
           +I +M F GYFLIVADFIQWAK N IPVGPGRGSGAGS+ AY L ITD+DP+   LLFER
Sbjct: 1   MINQMGFPGYFLIVADFIQWAKDNAIPVGPGRGSGAGSLVAYVLKITDLDPIEHELLFER 60

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           FLNP+R+SMPDFDIDFC DRRDEVI YV  KYG + V+QIIT+GS+ AKA +RDVGR L 
Sbjct: 61  FLNPERVSMPDFDIDFCMDRRDEVIDYVARKYGRDSVSQIITYGSMAAKAVVRDVGRVLG 120

Query: 467 MPYSQVDRLCKLIPNDPAHP 486
            PY       K  P    H 
Sbjct: 121 HPYGFYRPGGKDDPLRAGHD 140


>gi|210608496|ref|ZP_03287872.1| hypothetical protein CLONEX_00051 [Clostridium nexile DSM 1787]
 gi|210153020|gb|EEA84026.1| hypothetical protein CLONEX_00051 [Clostridium nexile DSM 1787]
          Length = 377

 Score =  174 bits (441), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 140/374 (37%), Gaps = 48/374 (12%)

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTK 615
            F+   I+   L+K D LG    T+++   + + Q  G     + IP DD     L    
Sbjct: 1   HFDYHSIDH-NLLKLDILGHDDPTIIKMLEELVEQLTGKPFKATDIPLDDQGVMKLFRDT 59

Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SI 674
            +LGI   +  G      G+     + +I +V   +P  + +++  +   +G +  + + 
Sbjct: 60  SSLGITPDDIGGCPVGCLGIPEFGTDFVIQMVVDTKPKTLSDLIRISGLSHGTDVWLNNA 119

Query: 675 HPLIDPMLKETQGVIIYQEQVMQIAQ---LLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
             LI          I  ++ +M       + S  S +  + +R+ +  K K    K    
Sbjct: 120 QELIKSGKATISTAICTRDDIMTYLINKGMDSEESFTIMERVRKGLVAKGK---CKDWPE 176

Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH--------- 782
           F     ++GI        +    +   Y F K+HAAAY +++++ A+ K +         
Sbjct: 177 FKKDMIEHGIPD-----WYIWSCEKIKYMFPKAHAAAYVMMAFRIAYCKVYYPLAYYAAY 231

Query: 783 ---------YPVEFLAA---------------SMTLEMDNVEKIKKFCQDARQFNIQIMP 818
                    Y +                    S++ +  +  K  K  Q+      + +P
Sbjct: 232 FSIRASAFSYELMCQGKEKLEFYMNDYKRRSDSLSKKEQDTLKDMKIVQEMYARGFEFLP 291

Query: 819 PSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
             +       F++ D ++   L++I+G+G   A  +  A+AD P+ S +DF  R    K 
Sbjct: 292 LDIYRAKATKFQIIDGKLMPPLSSIEGMGDKAADAVEMAAADGPYLSKDDFRQRTKVSKT 351

Query: 878 NRRVLESLVFAGAL 891
               +  L   G L
Sbjct: 352 VIDFMADLGMFGDL 365


>gi|32481338|gb|AAP84016.1| catalase [Vibrio cholerae]
          Length = 162

 Score =  172 bits (436), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 85/167 (50%), Positives = 111/167 (66%), Gaps = 8/167 (4%)

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAK 330
           +VEIA+RC+  +++    LP F            E+ L  K+  GLE RL         +
Sbjct: 1   SVEIAKRCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVR 55

Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL
Sbjct: 56  AKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYAL 115

Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
            ITD+DP+ + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   
Sbjct: 116 KITDLDPVEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEM 162


>gi|32481350|gb|AAP84022.1| catalase [Vibrio cholerae]
          Length = 160

 Score =  172 bits (435), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 85/165 (51%), Positives = 109/165 (66%), Gaps = 8/165 (4%)

Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRL 341
           +++    LP F            E+ L  K+  GLE RL         +     +Y +RL
Sbjct: 1   VRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERL 55

Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
             EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + 
Sbjct: 56  QVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYD 115

Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
           LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + V+QI
Sbjct: 116 LLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQI 160


>gi|218510794|ref|ZP_03508672.1| DNA polymerase III alpha subunit protein [Rhizobium etli Brasil 5]
          Length = 345

 Score =  171 bits (433), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 88/247 (35%), Gaps = 29/247 (11%)

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK---VGDNRIYYSLAAIKGVGTTTARHIM 854
                  +   DA++   ++ P  +N    D     V    +   +  ++G+ T  +  I+
Sbjct: 13   GFYAPAQIVIDAKKHGAEVRPVCINRSRWDCTLEEVEGTAVRLGMRLVRGLATADSARIV 72

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
             A  D+PF S++D   R     +    L  L  A A           L SL   ++ A W
Sbjct: 73   AARGDEPFASVDDMWRR---SGVPAASLVELAEADAF----------LPSLRLERRDALW 119

Query: 915  VEKNRTNKHENIF--------AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
              K   ++   +F                  + L + +  ++ V    +   +G     H
Sbjct: 120  AIKALRDEPLPLFTAAAEREARAIAEQQEPDVELRQMTDGHNVV---EDYTHIGLTLREH 176

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            PL   +  L K  I    E++    G  +  A +V+ +Q+  + KG  + ++T  +    
Sbjct: 177  PLRFLRADLAKRRIVTCAEAMTARDGQWLMAAGLVLVRQRPGSAKG--VMFITIEDETGI 234

Query: 1027 YEANFFP 1033
                 +P
Sbjct: 235  ANVVVWP 241


>gi|237749593|ref|ZP_04580073.1| predicted protein [Helicobacter bilis ATCC 43879]
 gi|229374811|gb|EEO25202.1| predicted protein [Helicobacter bilis ATCC 43879]
          Length = 175

 Score =  169 bits (429), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 4/179 (2%)

Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
           F+   +T  + N EK+ ++  +A+   + ++ PS+N     F V +  + YSL A+KGVG
Sbjct: 1   FMCGLLTSAIGNEEKLAQYIYEAKGKGLNVLGPSINKSGYPFFVENGALRYSLRAVKGVG 60

Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               + I  A  +KPF  L DFC R   K +NR+ +E+L+FAGA+D FG +R  LL S+D
Sbjct: 61  IAAVKEIYRARKEKPFADLFDFCVRTSVKSVNRKTIEALIFAGAMDEFGENRATLLASVD 120

Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              ++A+    +  N     F  E  T   K    +           +E+  LG YFS 
Sbjct: 121 VALEHAELFAGD--NDQLGFFLDEGLTI--KPKYAETEEMPLVDLLAHEKETLGIYFSD 175


>gi|291532877|emb|CBL05990.1| DNA polymerase III, alpha subunit [Megamonas hypermegale ART12/1]
          Length = 207

 Score =  169 bits (429), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 8/195 (4%)

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYV 184
               R+    L++   EG+I L+   +G I +A   ++ + AEK +  +  +F  D  ++
Sbjct: 2   YYKPRVDKDLLRQYH-EGIICLSSCIAGEIPQAIIRDNMERAEKLVQEYVDIFGKDNFFL 60

Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +Q H+  +  +    ++ LA  ++L LVATN+  ++ +ED + HDVL+ +     +  K
Sbjct: 61  EIQNHQIPEEAKANKGLISLAQKYDLKLVATNDIHYIKKEDNDFHDVLLCIQTGRTLDDK 120

Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           DR      D YLK+ +EM+++F D PEA+ NT+EIA RC+   +     LP F   E   
Sbjct: 121 DRMKFYNDDFYLKSGAEMLALFKDTPEAITNTLEIANRCNVSFEFGHLHLPNFPLPEGM- 179

Query: 303 IQKEEENELRNKAVA 317
               +E  L      
Sbjct: 180 ---TDEQYLHKLCKE 191


>gi|257458195|ref|ZP_05623349.1| DNA polymerase III subunit alpha [Treponema vincentii ATCC 35580]
 gi|257444489|gb|EEV19578.1| DNA polymerase III subunit alpha [Treponema vincentii ATCC 35580]
          Length = 153

 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/159 (45%), Positives = 95/159 (59%), Gaps = 10/159 (6%)

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
           T   YLK+  EM  +F   PE L NT  IA RC+F +    P+LP +   E       +E
Sbjct: 5   TDQFYLKSAEEMEKLFPGYPEMLSNTCRIAERCNFEIPQPGPLLPVYQIPED---FATKE 61

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             + +    GL+ R            ++  +R ++EL +I +M F GYFLIV DFI WAK
Sbjct: 62  EYITHLVQEGLKKRY-------NPVTEEMTKRAEYELGIIMKMDFVGYFLIVWDFINWAK 114

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
           ++ IPVGPGRGSGAGS+ AYA+ ITDIDPL++ LLFERF
Sbjct: 115 EHGIPVGPGRGSGAGSIVAYAMRITDIDPLKYKLLFERF 153


>gi|312985340|gb|ADR30813.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|312985344|gb|ADR30815.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 25/244 (10%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +  +  N      + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLNYDTKN-----AYLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY     IKG+       I+E       F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGVIYVGFGKIKGLNRKVIDEIVEERNSHGLFSGLTDFLQRMAGSDIGESDIVQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L +AG+LD FGY+R +L  +  ++    +             F    G+   +  +    
Sbjct: 116  LTYAGSLDHFGYNRQELKTNAASLITAME-------------FG---GSLLSETKISAIG 159

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   R  +E+ VLGF  SGHP+D  +  + K G     +  A      +++A M+ S 
Sbjct: 160  EMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVKKGYTQINDLKA---DQIVKMAVMIDSI 216

Query: 1005 QQKK 1008
            +  +
Sbjct: 217  RTTR 220


>gi|32481346|gb|AAP84020.1| catalase [Vibrio cholerae]
          Length = 156

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 82/161 (50%), Positives = 105/161 (65%), Gaps = 8/161 (4%)

Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQD 336
           RC+  +++    LP F            E+ L  K+  GLE RL         +     +
Sbjct: 1   RCNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPE 55

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
           Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+D
Sbjct: 56  YDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLD 115

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
           PL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   
Sbjct: 116 PLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEM 156


>gi|23321269|gb|AAN23129.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|23321271|gb|AAN23130.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|23321273|gb|AAN23131.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 201

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 110/206 (53%), Gaps = 10/206 (4%)

Query: 163 SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLS 221
           + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN  +F++
Sbjct: 1   NQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFIT 60

Query: 222 EEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
           EE +EAH++ +A+     +    RP   +P  YL++ +EM  +F+D+PEAL N+VEIA+R
Sbjct: 61  EESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKR 120

Query: 281 CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDY 337
           C+  +++    LP F            E+ L  K+  GLE RL         +     +Y
Sbjct: 121 CNVTVRLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEY 175

Query: 338 RQRLDFELNVIARMKFSGYFLIVADF 363
            +RL  EL+VI +M F GYFLIV +F
Sbjct: 176 DERLQVELDVINQMGFPGYFLIVMEF 201


>gi|224383918|gb|ACN42755.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|224383920|gb|ACN42756.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|224383922|gb|ACN42757.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|224383924|gb|ACN42758.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|224383928|gb|ACN42760.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|312985350|gb|ADR30818.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 105/244 (43%), Gaps = 25/244 (10%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +  +  N      + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLNYDTKNS-----YLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY  L  IKG+       I++       F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGVIYVGLGKIKGLNRKVIDEIVKERNSHGLFSGLTDFLQRMAGSDIGESDIVQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L +AG+LD FGY+R +L  +  ++    +             F    G+   +  +    
Sbjct: 116  LTYAGSLDHFGYNRQELKTNAASLITAME-------------FG---GSLLSETKISAIG 159

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   R  +E+ VLGF  SGHP+D  +  + K G     +  A      +++A M+ S 
Sbjct: 160  EMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVKKGYTQINDLKA---DQIVKMAVMIDSI 216

Query: 1005 QQKK 1008
            +  +
Sbjct: 217  RTTR 220


>gi|224383930|gb|ACN42761.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 25/244 (10%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +  +  N      + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLNYDSKN-----AYLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY     IKG+       I+E       F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGVIYVGFGKIKGLNRKVINEIVEERNSHGLFSGLTDFLQRMAGSDIGESDIIQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L +AG+LD FGY+R +L  +  ++    +             F    G+   +  +    
Sbjct: 116  LTYAGSLDHFGYNRQELKTNAASLITAME-------------FG---GSLLSETKISAIG 159

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   R  +E+ VLGF  SGHP+D  +  + K G     +  A      +++A M+ S 
Sbjct: 160  EMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVKKGYTQINDLKA---DQIVKMAVMIDSI 216

Query: 1005 QQKK 1008
            +  +
Sbjct: 217  RTTR 220


>gi|312985332|gb|ADR30809.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score =  165 bits (419), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 25/244 (10%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +  +  N      + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLNYDSKN-----AYLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY     IKG+       I+E       F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGFIYVGFGKIKGLNRKVIDEIVEERNSHGLFSGLTDFLQRMAGSDIGESDIIQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L +AG+LD FGY+R +L  +  ++    +             F    G+   +  +    
Sbjct: 116  LTYAGSLDHFGYNRQELKTNAASLITAME-------------FG---GSLLSETKISAIG 159

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   R  +E+ VLGF  SGHP+D  +  + K G     +  A      +++A M+ S 
Sbjct: 160  EMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVKKGYTQINDLKA---DQIVKMAVMIDSI 216

Query: 1005 QQKK 1008
            +  +
Sbjct: 217  RTTR 220


>gi|224383932|gb|ACN42762.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|224383934|gb|ACN42763.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|312985338|gb|ADR30812.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score =  165 bits (419), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 25/244 (10%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +  +  N      + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLNYDSKN-----AYLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY     IKG+       I+E       F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGIIYVGFGKIKGLNRKVIDEIVEERNSHGLFSGLTDFLQRMAGSDIGESDIIQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L +AG+LD FGY+R +L  +  ++    +             F    G+   +  +    
Sbjct: 116  LTYAGSLDHFGYNRQELKTNAASLITAME-------------FG---GSLLSETKISAIG 159

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   R  +E+ VLGF  SGHP+D  +  + K G     +  A      +++A M+ S 
Sbjct: 160  EMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVKKGYTQINDLKA---DQIVKMAVMIDSI 216

Query: 1005 QQKK 1008
            +  +
Sbjct: 217  RTTR 220


>gi|224383926|gb|ACN42759.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score =  165 bits (418), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 105/244 (43%), Gaps = 25/244 (10%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +  +  N      + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLNYDTKNS-----YLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY  L  IKG+       I++       F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGVIYVGLGKIKGLNRKVMDEIVKERNSHGLFSGLTDFLQRMAGSDIGESDIVQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L +AG+LD FGY+R +L  +  ++    +             F    G+   +  +    
Sbjct: 116  LTYAGSLDHFGYNRQELKTNAASLITAME-------------FG---GSLLSETKISAIG 159

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   R  +E+ VLGF  SGHP+D  +  + K G     +  A      +++A M+ S 
Sbjct: 160  EMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVKKGYTQINDLKA---DQIVKMAVMIDSI 216

Query: 1005 QQKK 1008
            +  +
Sbjct: 217  RTTR 220


>gi|312985346|gb|ADR30816.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|312985348|gb|ADR30817.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 104/244 (42%), Gaps = 25/244 (10%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +  +  N      + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLNYDSKN-----AYLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY     IKG+       I++       F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGVIYVGFGKIKGLNRKVIDEIVKERNSHGLFSGLTDFLQRMAGSDIGESDIVQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L +AG+LD FGY+R +L  +  ++    +             F    G+   +  +    
Sbjct: 116  LTYAGSLDHFGYNRQELKTNAASLITAME-------------FG---GSLLSETKISAIG 159

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   R  +E+ VLGF  SGHP+D  +  + K G     +  A      +++A M+ S 
Sbjct: 160  EMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVKKGYTQINDLKA---DQIVKMAVMIDSI 216

Query: 1005 QQKK 1008
            +  +
Sbjct: 217  RTTR 220


>gi|289806004|ref|ZP_06536633.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 158

 Score =  164 bits (416), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 11/167 (6%)

Query: 20  YSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDM 79
           YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+PI+G   ++  
Sbjct: 1   YSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHN 60

Query: 80  QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI 139
           +               +  + +L +   GYQ L  L+S+ Y    G     I   WL E+
Sbjct: 61  E----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL 110

Query: 140 GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 111 -KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 156


>gi|312985334|gb|ADR30810.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|312985336|gb|ADR30811.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score =  164 bits (415), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 105/244 (43%), Gaps = 25/244 (10%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +  +  N      + Q+ +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLNYDTKNS-----YLQNIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY  L  IKG+       I++       F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGVIYVGLGKIKGLNRKVIDEIVKERNSHGLFSGLTDFLQRMAGSDIGESDIVQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L +AG+LD FGY+R +L  +  ++    +             F    G+   +  +    
Sbjct: 116  LTYAGSLDHFGYNRQELKTNAASLITAME-------------FG---GSLLSETKISAIG 159

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   R  +E+ VLGF  SGHP+D  +  + K G     +  A      +++A M+ S 
Sbjct: 160  EMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVKKGYTQINDLKA---DQIVKMAVMIDSI 216

Query: 1005 QQKK 1008
            +  +
Sbjct: 217  RTTR 220


>gi|257487765|ref|ZP_05641806.1| error-prone DNA polymerase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 218

 Score =  164 bits (415), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 95/243 (39%), Gaps = 27/243 (11%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +  +  L   S++S   GA S   + ++       A+AITD   L   +   Q + + G+
Sbjct: 2   TSEYAELHCLSNFSFQRGASSARELFERALRHGYQALAITDECTLAGIVRAWQASISTGL 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             IIG ++ I+                  P  VLLV +  GY+ L +L++        K 
Sbjct: 62  PLIIGSEMHIENG----------------PKAVLLVESQTGYEALCKLITVARRR-ARKG 104

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             R+      E   +GL+         I        +Q         ++ F +RL++ ++
Sbjct: 105 EYRLLREDF-EPSPDGLLA--------IWLPEIEGDAQACLAHGRWLRERFAERLWLGVE 155

Query: 188 RHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            HRG  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V++    
Sbjct: 156 LHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEAGHL 215

Query: 247 RVT 249
              
Sbjct: 216 LFA 218


>gi|312985342|gb|ADR30814.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score =  164 bits (415), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 103/244 (42%), Gaps = 25/244 (10%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +  +  N      + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLNYDTKN-----AYLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY     IKG+       I+E       F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGVIYVGFGKIKGLNRKVIDEIVEERNSHGLFSGLTDFLQRMAGSDIGESDIVQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L +A +LD FGY+R +L  +  ++    +             F    G+   +  +    
Sbjct: 116  LTYASSLDHFGYNRQELKTNAASLITAME-------------FG---GSLLSETKISAIG 159

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   R  +E+ VLGF  SGHP+D  +  + K G     +  A      +++A M+ S 
Sbjct: 160  EMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVKKGYTQINDLKA---DQIVKMAVMIDSI 216

Query: 1005 QQKK 1008
            +  +
Sbjct: 217  RTTR 220


>gi|258647015|ref|ZP_05734484.1| DNA polymerase III, alpha subunit [Dialister invisus DSM 15470]
 gi|260404455|gb|EEW98002.1| DNA polymerase III, alpha subunit [Dialister invisus DSM 15470]
          Length = 901

 Score =  163 bits (412), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 117/763 (15%), Positives = 232/763 (30%), Gaps = 176/763 (23%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYE-----AHDVLMA--VAHSTVVSQKDRPRVTPDHYL 254
           +L    ++ ++A+     +SE  +      A D+L    + ++    +  +     D  +
Sbjct: 222 ELKAGMKIRMMASGKVCTVSEVGHFLPFPAAADILCCGSIGYAAANMENIQDWEIGDTVV 281

Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
            + +  ++      +A       A+   F+           +E   +   +E  ++L   
Sbjct: 282 DSENNTLTALPGYVKA-------AKPTIFLGLFPIIKQGDPVEMGTNHEHEEVYDKLGKL 334

Query: 315 AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
                       A+      +  + RL  EL  I    +S  F      +Q++     P 
Sbjct: 335 CYDRAH------AVYGDPLPEIVKDRLRLELKFIQDNGYSTIFYTAHKLVQYSNDGGHPA 388

Query: 375 GPGRGSGAGSVTAYALTITDIDPLR---------FSLLFERFLNPDRMSMPDFDIDFCQD 425
           G  R S   S  A+   IT+I+PL          ++  +          +PD +   C  
Sbjct: 389 G-VRDSLGSSFVAFMSGITEINPLPSHYVCPKCHWNHFYTDGSVGSGFDLPDHNCPECGT 447

Query: 426 RRDEVIRYVQNKYGHERVAQI-----ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
                   +  K GH     +      T         ++D G A    Y +     KL+ 
Sbjct: 448 --------LLYKDGHNIPYSVLFGLDGTNIKGFGLVFVQDAGLAEVYKYME-----KLLG 494

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +       + I    +F    L  P V + L    +                       
Sbjct: 495 REHVLCYGDKLIPGSEKF----LKYPDVYKWLNAKDR----------------------- 527

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT-----LTLLQKSLDFLAQRGVK 595
                     S     +FN   I        D L L       LT++ +  +        
Sbjct: 528 -----RWPANS---TVRFNYHSIMD------DMLSLTMNGNDALTMVHELQNLTG----- 568

Query: 596 VDLSLIPFDDHETYHLLTTKG---------------------TLGIFQLESSGMRQALEG 634
           ++   IPF+D     +  +                       TLG+    +   R  LE 
Sbjct: 569 INPQSIPFNDARALSVFCSTDALGITPSKLADVIVNGKVTVGTLGLPGYGTPFARGVLED 628

Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
           +QP    +++  VS +R G    + V N R    E I +    I+ ++   + V+ Y   
Sbjct: 629 VQPKNFSELVK-VSGFRYGT--GVWVNNAR----ELIKNDTVKIEEVISTREDVMNY--L 679

Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
           +    + L+ +++ E     + +  K    + + +   +                F    
Sbjct: 680 IHHGVESLTSFTVMENVRKGKGIESKGSNHLAELEAAHVP-------------QWFIDSC 726

Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN---------------- 798
               Y   K+     A+ + + AW K ++P+ + AA  T+                    
Sbjct: 727 LKIRYLPPKAPPIFSAMTALRIAWFKVYHPLAYYAAYFTVYAGGAFNATVILNGLASQKQ 786

Query: 799 -------------VEK----IKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLA 840
                        V+K    + +   +     ++ +P S+       FK+ D ++  S  
Sbjct: 787 ELARIAALKHLTAVDKDNAAVIEVAAEMYLRGMEFLPISLEKSEATAFKIEDGKLLPSFN 846

Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            I  +G   A  I++   +  F S  D   R    +     +E
Sbjct: 847 CIPALGNAAAGEIVKVRNEHLFTSKADLKKRGKVSQSIIDTME 889


>gi|36938266|gb|AAQ86809.1| DnaE precursor [Thermosynechococcus vulcanus]
          Length = 200

 Score =  163 bits (412), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/167 (38%), Positives = 97/167 (58%), Gaps = 8/167 (4%)

Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             A   FNKSH+ AY  ++YQTA++K ++PVE++AA +T    + +K++++        I
Sbjct: 31  AIAANCFNKSHSTAYGYVTYQTAFLKANFPVEYMAALLTANSGDQDKVQRYIATCLSMGI 90

Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV- 872
           +++PP VN   +DF    N+I + L+A++ VG      I++A      F SL DFC RV 
Sbjct: 91  EVLPPDVNRSDIDFTPVGNKILFGLSAVRNVGQGMIEVILQARSEGGAFQSLGDFCERVP 150

Query: 873 ----DSKKLNRRVLESLVFAGALDCFGYSR--MQLLQSLDNIQKYAQ 913
               DS+ LNRR LESL+  GA+D     R   QLLQ L  + ++AQ
Sbjct: 151 RVAGDSRILNRRALESLIACGAMDSLHPQRNCNQLLQDLPLVLEWAQ 197


>gi|121998458|ref|YP_001003245.1| DNA polymerase III subunit alpha-like protein [Halorhodospira
           halophila SL1]
 gi|121589863|gb|ABM62443.1| DNA polymerase III alpha subunit-like protein [Halorhodospira
           halophila SL1]
          Length = 590

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 145/381 (38%), Gaps = 27/381 (7%)

Query: 579 LTL-LQKSLDFLAQRGVKVDLSLI-PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
           LT  + +    L        L    P+DD +T  L+    T GI  LE + +++ +    
Sbjct: 168 LTCEMVRLARALNDNRDCDPLRWAYPWDDPDTLRLIARGETAGIPLLEDAQLQERMREAA 227

Query: 637 PDCIEDIIALVSLYRPG-PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
           P  +E++  +V   R G P   +  Y   + G  +    HP ++ +L  T  + +Y+EQV
Sbjct: 228 PRSLEEVTQVVVAARDGAPHGLLERYRAARTGASRPPLPHPELEDILAPTGYIWLYREQV 287

Query: 696 MQIAQLLSGYSLSEADVL--RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
           +     L G  L+EA  L  R +       E +  ++     A++  +     + +   L
Sbjct: 288 VAALARLLGCELAEAVGLAQRLSEEGGDAHEGELSRQLGERIAARCQLPYARGLYLLRAL 347

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL------------------- 794
            +      +++        +Y+ A+ K  YP  F AA +                     
Sbjct: 348 RQGLAQVVDRAATLVEVTEAYRQAYYKARYPAVFQAARLNRALRRVTPRGGVRYGVGGGP 407

Query: 795 --EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTAR 851
                + E + + C++A    + ++PP +N     F+ +  N + Y L AI  +   TA 
Sbjct: 408 DGVCPHREILIRLCKEALSDGVTVLPPDINRSDWGFRPLDRNTVIYGLGAIAQIDRQTAD 467

Query: 852 HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            ++       + SL D   R          +E L+F+GALD FG  R  L + LD  Q  
Sbjct: 468 RLVLRRRGGEYRSLMDLIIRGFGGTAPAIQVEPLIFSGALDEFGRDRWHLRRELDEAQAV 527

Query: 912 AQWVEKNRTNKHENIFAHEKG 932
             W          ++      
Sbjct: 528 RGWQYAADGRTTHSLAGGLDA 548


>gi|530430|emb|CAA83754.1| DNA Polymerase III (alpha) [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 198

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/195 (38%), Positives = 112/195 (57%), Gaps = 1/195 (0%)

Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
           IFQLES GM   +   Q D IE I    +LYRPGP + I +Y   K    K   I   + 
Sbjct: 4   IFQLESKGMTDLISKXQVDSIELISIASALYRPGPQEMIPIYLENKK-TNKFKIIDKSVY 62

Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
            +LK T G+I+YQEQVMQ+   ++ +S ++AD++RRAM KK  + M   K  FI+ A KN
Sbjct: 63  EILKPTYGIIVYQEQVMQMLNKVANFSYAKADIIRRAMSKKNNKVMQSMKLEFINSAIKN 122

Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
             S   A  I+  + KF++YGFNKSH+ +Y+ ISY  A+ K H+  EF  + +   + N 
Sbjct: 123 NFSYNKANLIWNWIEKFSNYGFNKSHSISYSYISYWLAYFKAHFTTEFYTSLLDQNIGNE 182

Query: 800 EKIKKFCQDARQFNI 814
            K +++ ++   + I
Sbjct: 183 IKTQQYIKELYDYKI 197


>gi|157310964|ref|YP_001468960.1| putative DNA polymerase III alpha subunit [Corynebacterium phage
           P1201]
 gi|95832112|gb|ABF57512.1| putative DNA polymerase III alpha subunit [Corynebacterium phage
           P1201]
          Length = 476

 Score =  162 bits (410), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/281 (26%), Positives = 126/281 (44%), Gaps = 18/281 (6%)

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM-----QPDCIEDIIALVSLY 650
             +  +P+DD ET          GIFQ E    R  ++ +            +  + +L 
Sbjct: 6   QTMYDLPYDDEETLKEFAKDNLTGIFQFEGRATRSIMKKIYSGTDNVPDFMTLADVNALS 65

Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
           RPG + + +   Y +   GKE    IHP++D +L ET   ++YQEQVMQI     G S  
Sbjct: 66  RPGSLISGMTAEYIDVARGKEPRK-IHPVVDEILSETNNCLVYQEQVMQIGSRFGGLSDH 124

Query: 709 EADVLRRAMGKKIKEE-MDKQKERFISGASKN-GISKTIAVNIFELLAKFADYGFNKSHA 766
           E   LR+ +G K      ++   +F  GA    G  + ++  +++ +A  A Y FN +HA
Sbjct: 125 EIGRLRKIIGAKQAGGAFEEFWIKFRDGARDTVGADEALSREVWDYMAASASYLFNIAHA 184

Query: 767 AAYAVISYQTAWMKTHYPVEFL------AASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            +YA+++Y   ++K H+P EF       A+  +     ++      Q+A    + + PP 
Sbjct: 185 ISYALVAYWCMYLKVHHPAEFYAASLKSASKKSKTKGKIDPQLPLLQEAIANGLTVSPPH 244

Query: 821 VNTPCVDFKVGDNRIYY--SLAAIKGVGTTTARHIMEASAD 859
                V ++  ++R         I GVG  TA  ++EA   
Sbjct: 245 PRLSGVSWEPNEHRTGVVGGFTQIPGVGEKTAEKMLEARNK 285


>gi|258615947|ref|ZP_05713717.1| DNA polymerase III PolC [Enterococcus faecium DO]
          Length = 340

 Score =  161 bits (407), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 137/358 (38%), Gaps = 71/358 (19%)

Query: 597 DLSLIPFDDHETYHLL--------------TTKGTLGIFQLESSGMRQALEGMQPDCIED 642
           D   IP DD E   +               +  GTLGI +  +  +R  LE   P    +
Sbjct: 5   DPQTIPTDDPEVMRIFAGPEVLGVSQEQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAE 64

Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
           ++ +  L     +          N +E I      +  ++     +++Y    +  A L 
Sbjct: 65  LLQISGLSHGTDVWLG-------NAEELIRRGDATLAEVIGCRDDIMVY----LIHAGLD 113

Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
           SG +    + +R+    KI +E+   +E ++S   +N +      +  ++      Y F 
Sbjct: 114 SGMAFKIMETVRKGQWNKIPDEL---RETYLSAMKENNVPDWYIDSCSKI-----KYMFP 165

Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------------------- 800
           K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ +                      
Sbjct: 166 KAHAAAYVLMALRVAYFKVYFPILYYCAYFSVRADDFDLVSMCKGKDAVKQAMKEITDKG 225

Query: 801 -----------KIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
                       + +   +  +   +        +  V+F +  + +     A+  +GT 
Sbjct: 226 LDASVKEKNQLTVLELANEMLERGFKFGMIDLYKSDAVNFVIEGDTLIAPFRAVPSLGTN 285

Query: 849 TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
            A+ I+EA  D PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 286 VAKQIVEARKDGPFLSKEDLATR---GKVSKTLIEYMNDNGVLKDLPDENQLSLFDML 340


>gi|261885746|ref|ZP_06009785.1| DNA polymerase III subunit alpha [Campylobacter fetus subsp.
            venerealis str. Azul-94]
          Length = 401

 Score =  159 bits (403), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 1/195 (0%)

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            +AAIKGVG      I++A  D PF+S++ F S+ D   +NRRV ESL+ +GA D FG++R
Sbjct: 1    MAAIKGVGVGAVEDIIKAREDGPFESVDSFISKTDCTTVNRRVFESLIKSGAFDDFGFTR 60

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE-NSSVRFENEQR 957
              L+ +L+ I + ++ +   + N   ++F+ +       + L     E +     + EQ 
Sbjct: 61   KMLIHNLETIIENSKRISDIKKNATNSLFSDDDSMSEISVDLVNIKDEFDKKEILKFEQE 120

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            +LG Y SGHPLD Y+  + K+      E      G+ I +   +     K T+ G ++  
Sbjct: 121  ILGVYVSGHPLDEYRDKIDKINYTVSSEFENVEDGSEILVVGKIEDTTTKITKTGKKMAI 180

Query: 1018 VTFSEPAKEYEANFF 1032
            +   +     EA  F
Sbjct: 181  INILDIHGNIEATAF 195



 Score = 41.1 bits (95), Expect = 0.95,   Method: Composition-based stats.
 Identities = 5/51 (9%), Positives = 17/51 (33%)

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++     + + I +   +     + T+ G  +  +   + +   E   F
Sbjct: 270  TIKDIPNLTKESEILIIGKMSHINIRTTKSGMEMAILNIVDISGNSEMIAF 320


>gi|226343795|gb|ACO48520.1| DnaE [Escherichia coli]
 gi|226343797|gb|ACO48521.1| DnaE [Escherichia coli]
 gi|226343803|gb|ACO48524.1| DnaE [Escherichia coli]
 gi|226343805|gb|ACO48525.1| DnaE [Escherichia coli]
 gi|226343807|gb|ACO48526.1| DnaE [Escherichia coli]
 gi|226343809|gb|ACO48527.1| DnaE [Escherichia coli]
 gi|226343811|gb|ACO48528.1| DnaE [Escherichia coli]
 gi|226343813|gb|ACO48529.1| DnaE [Escherichia coli]
 gi|226343815|gb|ACO48530.1| DnaE [Escherichia coli]
 gi|226343819|gb|ACO48532.1| DnaE [Escherichia coli]
 gi|226343821|gb|ACO48533.1| DnaE [Escherichia coli]
 gi|226343823|gb|ACO48534.1| DnaE [Escherichia coli]
 gi|226343827|gb|ACO48536.1| DnaE [Escherichia coli]
 gi|226343829|gb|ACO48537.1| DnaE [Escherichia coli]
 gi|226343831|gb|ACO48538.1| DnaE [Escherichia coli]
 gi|226343833|gb|ACO48539.1| DnaE [Escherichia coli]
 gi|226343835|gb|ACO48540.1| DnaE [Escherichia coli]
 gi|226343837|gb|ACO48541.1| DnaE [Escherichia coli]
 gi|226343839|gb|ACO48542.1| DnaE [Escherichia coli]
 gi|226343841|gb|ACO48543.1| DnaE [Escherichia coli]
 gi|226343843|gb|ACO48544.1| DnaE [Escherichia coli]
 gi|226343845|gb|ACO48545.1| DnaE [Escherichia coli]
 gi|226343847|gb|ACO48546.1| DnaE [Escherichia coli]
 gi|226343849|gb|ACO48547.1| DnaE [Escherichia coli]
 gi|226343851|gb|ACO48548.1| DnaE [Escherichia coli]
 gi|226343855|gb|ACO48550.1| DnaE [Escherichia coli]
 gi|226343857|gb|ACO48551.1| DnaE [Escherichia coli]
 gi|226343859|gb|ACO48552.1| DnaE [Escherichia coli]
          Length = 142

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/147 (52%), Positives = 98/147 (66%), Gaps = 8/147 (5%)

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP+F   +        E+ L  +A  GLE RLA        +  
Sbjct: 1   EIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGLEERLAFLFPDEEERVK 55

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL I
Sbjct: 56  RRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKI 115

Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFD 419
           TD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 116 TDLDPLEFDLLFERFLNPERVSMPDFD 142


>gi|226343853|gb|ACO48549.1| DnaE [Escherichia coli]
          Length = 142

 Score =  159 bits (402), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/147 (52%), Positives = 97/147 (65%), Gaps = 8/147 (5%)

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP+F            E+ L  +A  GLE RLA        +  
Sbjct: 1   EIAKRCNVTVRLGEYFLPQFPTGNM-----STEDYLVKRAKEGLEERLAFLFPDEEERVK 55

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL I
Sbjct: 56  RRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKI 115

Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFD 419
           TD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 116 TDLDPLEFDLLFERFLNPERVSMPDFD 142


>gi|226343799|gb|ACO48522.1| DnaE [Escherichia coli]
          Length = 142

 Score =  158 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/147 (52%), Positives = 98/147 (66%), Gaps = 8/147 (5%)

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP+F   +        E+ L  +A  GLE RLA        +  
Sbjct: 1   EIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGLEERLAFLFPDEEERLK 55

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL I
Sbjct: 56  RRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKI 115

Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFD 419
           TD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 116 TDLDPLEFDLLFERFLNPERVSMPDFD 142


>gi|226343817|gb|ACO48531.1| DnaE [Escherichia coli]
          Length = 141

 Score =  158 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/146 (52%), Positives = 97/146 (66%), Gaps = 8/146 (5%)

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP+F   +        E+ L  +A  GLE RLA        +  
Sbjct: 1   EIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGLEERLAFLFPDEEERVK 55

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL I
Sbjct: 56  RRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKI 115

Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDF 418
           TD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 116 TDLDPLEFDLLFERFLNPERVSMPDF 141


>gi|226343801|gb|ACO48523.1| DnaE [Escherichia coli]
          Length = 142

 Score =  158 bits (399), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 77/147 (52%), Positives = 98/147 (66%), Gaps = 8/147 (5%)

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++    LP+F   +        E+ L  +A  GLE RLA        +  
Sbjct: 1   EIAKRCNVTVRLGEXFLPQFPTGDM-----STEDYLVKRAKEGLEERLAFLFPDEEERVK 55

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL I
Sbjct: 56  RRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKI 115

Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFD 419
           TD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 116 TDLDPLEFDLLFERFLNPERVSMPDFD 142


>gi|291529693|emb|CBK95279.1| DNA polymerase III, alpha subunit [Eubacterium rectale M104/1]
          Length = 572

 Score =  156 bits (395), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 79/267 (29%), Positives = 123/267 (46%), Gaps = 29/267 (10%)

Query: 165 QVAEKRLLTFKKLF-GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
             A    L+  K+F  D  +  +Q H    ++    ++ +LA    + LVATN+      
Sbjct: 305 DDALNMALSLIKIFGHDNFFAEVQYHGIDLEKEIYPKIAELARELNIKLVATNDVHMAER 364

Query: 223 EDYEAHDVLMAVAHSTVVSQKDRPRVTPD--HYLKNRSEMVSIFSDL------PEALENT 274
            D E   +L      +    K    +  D   Y K   E  ++ S++       EA+ N 
Sbjct: 365 SDLEKRTLLRNFGKVSQKEPKWSAPIQGDSELYYKTGDEKAAMLSEILPEDMVNEAMNNI 424

Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
             IA +C+  L  +A   P F            +  LR     G++              
Sbjct: 425 ELIADQCNLELS-NAKHYPHFD---------NAKELLRKMCEDGIKEFYPGDL-----WT 469

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN---IPVGPGRGSGAGSVTAYALT 391
           ++   R+++EL  I +M F+ YF  VADFIQ+AK +    + +GPGRGSGAGS+      
Sbjct: 470 KELADRMEYELETINKMGFNDYFCEVADFIQYAKAHGENSVEIGPGRGSGAGSLVCRLCK 529

Query: 392 ITD-IDPLRFSLLFERFLNPDRMSMPD 417
           IT+ +DP+ ++LLFERFLNP+R+SMP 
Sbjct: 530 ITEGLDPIEYNLLFERFLNPERVSMPK 556



 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 10/154 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H+  SL +GA++    +DK      PAIAITD    ++ L+F     +  I+PI+
Sbjct: 6   IELHAHTDASLSDGAMTYKEYVDKAIEYGAPAIAITDHGGAWNWLDFFNYCKSKNIKPIL 65

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +  + +Q  L  +            I+LL     G+Q +   +S       G      
Sbjct: 66  GTEGYVGIQIPLSPSKTVSKRM----HILLLAKDYLGFQAISRYISESNRHIDGLGKPLG 121

Query: 132 CLSWLQEI------GTEGLIMLTGGSSGPIDRAF 159
            +  L +       G   +I  +   +G +   F
Sbjct: 122 SIEMLDKFFGPKSEGYNHVICCSACIAGVLATPF 155


>gi|226343825|gb|ACO48535.1| DnaE [Escherichia coli]
          Length = 142

 Score =  156 bits (395), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 77/147 (52%), Positives = 97/147 (65%), Gaps = 8/147 (5%)

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC   +++    LP+F   +        E+ L  +A  GLE RLA        +  
Sbjct: 1   EIAKRCXVTVRLGEXFLPQFPTGDM-----STEDYLVKRAKEGLEERLAFLFPDEEERVK 55

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL I
Sbjct: 56  RRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKI 115

Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFD 419
           TD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 116 TDLDPLEFDLLFERFLNPERVSMPDFD 142


>gi|319645716|ref|ZP_07999947.1| DNA polymerase III [Bacillus sp. BT1B_CT2]
 gi|317392263|gb|EFV73059.1| DNA polymerase III [Bacillus sp. BT1B_CT2]
          Length = 468

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/453 (16%), Positives = 161/453 (35%), Gaps = 69/453 (15%)

Query: 27  LSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK---ACAAGIQP---IIGCQLDIDMQ 80
           +++  +L+         +AITD   L + LE  Q        G  P    +    +  + 
Sbjct: 19  ITVKGLLETALEMNYKGLAITDHEVLSAHLEAIQTVRSMKKEGEMPQDFKLILGNEAYLV 78

Query: 81  DNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS------VRICL 133
           D+L+       P  T  P  ++L    +G+++L  L S+ +       +      V+  +
Sbjct: 79  DSLEEVRDNYQPGKTKFPHFLMLAVDEKGHEQLRILSSKAWENSFYTGTMERVPTVKKDV 138

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFF--------NSSQVAEKR-------LLTFKKLF 178
             L +     +I  T      ++                ++ ++        +     +F
Sbjct: 139 EDLLKKDPGHIIATTACLGSEVNIYLQKIMEVEKNDGDPELIKEYKLKIHQFITWCIDVF 198

Query: 179 -GDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
             D+ ++ LQ     ++     ++VQ+A  + L  + T ++ +L  ED   H   +    
Sbjct: 199 GKDKFFIELQPALSEEQIYCNKKLVQIADGYGLKRIVTTDAHYLRPEDRAIHQAFLNAKD 258

Query: 237 STVVSQKDRPRVTPDHYLKNRSEMVSIFSDL-----PEALENTVEIARRCSFILQVHAPI 291
                +++        +++N  E+    + +      EA++NT+ I          H PI
Sbjct: 259 G----EREVDSFYEACFVQNVDEIHERMNYIDKEIVEEAIQNTLLIGEMIEDYTIEHEPI 314

Query: 292 LPRFIEK-------------------ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
           +P+                       +  + + +++  L      G E +L +  + +  
Sbjct: 315 IPKMELPNFKLRHLFKPAYDKYEYIRKMSESKDDQDRYLLKLIEDGFENKLLKNDLTRDE 374

Query: 333 HAQDYRQRLDFELNVIAR------MKFSGYFLIVADFIQWAKKNNI----PVGPGRGSGA 382
             +    R++ EL  +           + Y++ V + I     +       VG  RGS A
Sbjct: 375 FHK-ILSRINVELGELWEISQKLNQSMASYYVTVREIINIIWDDECGGDSLVGAARGSAA 433

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
           G +  Y L  T I+P+++ L   R ++  R   
Sbjct: 434 GFLINYLLDNTQINPMQYDLPHWRHIHKSRPDC 466


>gi|317474981|ref|ZP_07934250.1| dnaE protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908884|gb|EFV30569.1| dnaE protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 585

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 83/423 (19%), Positives = 153/423 (36%), Gaps = 54/423 (12%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FV+L +H+SY LL    S  ++  K       A+ I D N + + L   ++    G++ 
Sbjct: 106 PFVNLGIHTSYELLNACCSPEDLCRKAKWLGHTAVGICDRNTMAATLNLQKECANTGLKH 165

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I G  L +  ++                 + +     EG   L+ +  R  ++D    ++
Sbjct: 166 IFGYSLTMMHEEER-------------VGLKIYALDNEGLHNLLRIQ-RAVMVDSEDNTL 211

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           R     L       +++            +     +   KR+    +    ++  N  + 
Sbjct: 212 RY--EQLLMYAAGCVVVFA-----IRSVYWMAGHPKQV-KRIRKGAEAVYYQVDANEYKA 263

Query: 190 RGYDRYRESQVV--------QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
              DR +   +             +  +  V   +  ++ ++D     V+  +A      
Sbjct: 264 DRIDREQLEALKYYFGNCYDADTDSFTVEPVLIPDCYYMDKDDAGYRIVVNKIATGAAHE 323

Query: 242 QKDRPRVTPDHYLKNRSEMVS----IFSDLPE-------ALENTVEIARRCSFILQVHAP 290
           Q D      D Y K   E+      +FS   +           TVEIA R     +    
Sbjct: 324 QSD------DQYFKTADELYDTLRPLFSGQWDFDSLFRRMCRPTVEIAGRADASFETGRM 377

Query: 291 ILPRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
            +P + +  E  +   +           GL+ ++ +    +     D        + +I 
Sbjct: 378 FMPEYRMRPEERERYGDRRTMFLRLLDDGLDRKVPEPERERYRERLDEE------VYIIE 431

Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
                 YFL+  D ++ A +  I  G GRGS  GS+ +Y L IT IDPL++ L+F RFL 
Sbjct: 432 STDNVDYFLVQWDMVREAHRRGIATGIGRGSAGGSLVSYLLGITSIDPLKYDLIFSRFLV 491

Query: 410 PDR 412
           P+R
Sbjct: 492 PER 494


>gi|289673965|ref|ZP_06494855.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae FF5]
          Length = 155

 Score =  155 bits (393), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 60/166 (36%), Positives = 89/166 (53%), Gaps = 11/166 (6%)

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
           ARRC+F L       P  +  +     +   + LR     G+  R   G           
Sbjct: 1   ARRCTFDLGDLKYEYPHELVPKG----QTSTSWLRELTERGVRRRWPGGLTPAT------ 50

Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
           R +++ EL +IA  KF  YFL V D +++A+  +I +  GRGS A S   YAL IT+++P
Sbjct: 51  RAQVEKELALIAEKKFDSYFLTVHDIVEFARSQHI-LCQGRGSAANSAVCYALGITELNP 109

Query: 398 LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            + +LLFERF++ +R   PD D+DF  DRR+EVI+Y+  +YG  R 
Sbjct: 110 EQSNLLFERFISRERNEPPDIDVDFEHDRREEVIQYIFRRYGRGRA 155


>gi|37695666|gb|AAR00364.1| DnaE [Vibrio parahaemolyticus]
 gi|37695674|gb|AAR00368.1| DnaE [Vibrio parahaemolyticus]
 gi|37695676|gb|AAR00369.1| DnaE [Vibrio parahaemolyticus]
 gi|37695678|gb|AAR00370.1| DnaE [Vibrio parahaemolyticus]
 gi|37695680|gb|AAR00371.1| DnaE [Vibrio parahaemolyticus]
 gi|37695682|gb|AAR00372.1| DnaE [Vibrio parahaemolyticus]
 gi|37695684|gb|AAR00373.1| DnaE [Vibrio parahaemolyticus]
 gi|145952266|gb|ABP98956.1| DnaE [Vibrio parahaemolyticus]
          Length = 149

 Score =  155 bits (393), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 80/154 (51%), Positives = 101/154 (65%), Gaps = 8/154 (5%)

Query: 283 FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQ 339
             +++    LP F  +       EE   L  K+  GLE RL         +     +Y +
Sbjct: 1   VTVRLGEYFLPAFPTE-----GMEETEFLVMKSREGLEERLEFLFPNEEERKKRRPEYDE 55

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
           RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL 
Sbjct: 56  RLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLE 115

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
           + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +
Sbjct: 116 YDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDH 149


>gi|37695662|gb|AAR00362.1| DnaE [Vibrio parahaemolyticus]
 gi|37695670|gb|AAR00366.1| DnaE [Vibrio parahaemolyticus]
 gi|37695686|gb|AAR00374.1| DnaE [Vibrio parahaemolyticus]
 gi|145952254|gb|ABP98950.1| DnaE [Vibrio parahaemolyticus]
 gi|145952256|gb|ABP98951.1| DnaE [Vibrio parahaemolyticus]
 gi|145952258|gb|ABP98952.1| DnaE [Vibrio parahaemolyticus]
 gi|145952260|gb|ABP98953.1| DnaE [Vibrio parahaemolyticus]
 gi|145952262|gb|ABP98954.1| DnaE [Vibrio parahaemolyticus]
 gi|145952264|gb|ABP98955.1| DnaE [Vibrio parahaemolyticus]
 gi|145952268|gb|ABP98957.1| DnaE [Vibrio parahaemolyticus]
          Length = 149

 Score =  155 bits (393), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 80/154 (51%), Positives = 101/154 (65%), Gaps = 8/154 (5%)

Query: 283 FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQ 339
             +++    LP F  +       EE   L  K+  GLE RL         +     +Y +
Sbjct: 1   VTVRLGEYFLPAFPTE-----GMEETEFLVMKSREGLEERLEFLFPDEEERKKRRPEYDE 55

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
           RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL 
Sbjct: 56  RLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLE 115

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
           + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +
Sbjct: 116 YDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDH 149


>gi|37695672|gb|AAR00367.1| DnaE [Vibrio parahaemolyticus]
          Length = 149

 Score =  155 bits (392), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 80/154 (51%), Positives = 101/154 (65%), Gaps = 8/154 (5%)

Query: 283 FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQ 339
             +++    LP F  +       EE   L  K+  GLE RL         +     +Y +
Sbjct: 1   VTVRLGEYFLPAFPTE-----GIEETEFLVMKSREGLEERLEFLFPDEEERKKRRPEYDE 55

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
           RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL 
Sbjct: 56  RLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLE 115

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
           + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +
Sbjct: 116 YDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDH 149


>gi|270710974|ref|ZP_06223163.1| DNA polymerase III, alpha subunit [Haemophilus influenzae HK1212]
 gi|270315668|gb|EFA27841.1| DNA polymerase III, alpha subunit [Haemophilus influenzae HK1212]
          Length = 144

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 70/138 (50%), Positives = 95/138 (68%)

Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
           Q+L+GY+L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA Y
Sbjct: 2   QVLAGYTLGGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGY 61

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           GFNKSH+AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP
Sbjct: 62  GFNKSHSAAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPP 121

Query: 820 SVNTPCVDFKVGDNRIYY 837
            +N     F V +    Y
Sbjct: 122 DINIGKHHFSVNEQGXIY 139


>gi|257487762|ref|ZP_05641803.1| error-prone DNA polymerase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 204

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 12/196 (6%)

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              ++  +ER  +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W+K 
Sbjct: 1   HGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKC 60

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD--------- 832
           H P  F  A +           +  QDAR+ +I+I P  V     D  +           
Sbjct: 61  HEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDSTRN 120

Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I   L  ++G     AR I  A + + F    D   R     L+ R  E+L  +GAL 
Sbjct: 121 LAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLSLRA---GLDARAAEALADSGALR 177

Query: 893 CFGYSRMQLLQSLDNI 908
                R +    +  +
Sbjct: 178 GLIGHRHRARWEVAGV 193


>gi|37695660|gb|AAR00361.1| DnaE [Vibrio parahaemolyticus]
          Length = 149

 Score =  154 bits (390), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 79/154 (51%), Positives = 101/154 (65%), Gaps = 8/154 (5%)

Query: 283 FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQ 339
             +++    LP F  +       +E   L  K+  GLE RL         +     +Y +
Sbjct: 1   VTVRLGEYFLPAFPTE-----GMKETEFLVMKSREGLEERLEFLFPDEEERKKRRPEYDE 55

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
           RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL 
Sbjct: 56  RLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLE 115

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
           + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +
Sbjct: 116 YDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDH 149


>gi|255024238|ref|ZP_05296224.1| DNA polymerase III PolC [Listeria monocytogenes FSL J1-208]
          Length = 280

 Score =  154 bits (389), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 58/294 (19%), Positives = 99/294 (33%), Gaps = 62/294 (21%)

Query: 230 VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQV 287
           +L+        +        PD + +   EM+  F+ L E  A E  V  +      ++ 
Sbjct: 1   ILIHSQGG---ANPLNRAELPDVHFRTTDEMLKEFAFLGEEKAKEIVVTNSNLVVDWMED 57

Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
             PI       + D      E+E+RN +         +         +    RL+ EL  
Sbjct: 58  LKPIKDELYTPKIDGA----EDEVRNMSYEMAHQLYGENL------PEIVEARLEKELKS 107

Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL---- 403
           I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL    L    
Sbjct: 108 IIGHGFAVIYLISHKLVKKSLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNC 166

Query: 404 -------------------------------------FERFLNPDRMSMPDFDIDFCQDR 426
                                                FE FL      +PD D++F  D 
Sbjct: 167 KASEFFDDGSVGSGFDLPDKDCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDY 226

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA-----LQMPYSQVDRL 475
           +     Y +  +G + V +  T G++  K A   V        + +  +++DRL
Sbjct: 227 QPVAHAYTKEIFGEDYVFRAGTIGTVAEKTAFGYVRNYERDMNMTIRGAEIDRL 280


>gi|145640822|ref|ZP_01796404.1| DNA polymerase III subunit alpha [Haemophilus influenzae R3021]
 gi|145274336|gb|EDK14200.1| DNA polymerase III subunit alpha [Haemophilus influenzae 22.4-21]
          Length = 276

 Score =  154 bits (389), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 1/146 (0%)

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946
            +GA D  G  R  L ++L++  + +    K+      ++F     T  D +         
Sbjct: 2    SGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTPPY 61

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                  + E+  LG Y S HP+  Y   L        ++     RG    +A +V + + 
Sbjct: 62   TEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVAASRI 121

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+KG+R+G  T  + +   +   F
Sbjct: 122  AMTKKGNRLGIATLDDRSGRLDLTLF 147


>gi|37695664|gb|AAR00363.1| DnaE [Vibrio parahaemolyticus]
          Length = 149

 Score =  154 bits (389), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 80/154 (51%), Positives = 100/154 (64%), Gaps = 8/154 (5%)

Query: 283 FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQ 339
             +++    LP F  +       EE   L  K+  GLE RL         +     +Y +
Sbjct: 1   VTVRLGEYFLPAFPTE-----GMEETEFLVMKSREGLEERLEFLFPDEEERKKRRPEYDE 55

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
           RL  EL VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL 
Sbjct: 56  RLQIELYVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLE 115

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
           + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +
Sbjct: 116 YDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDH 149


>gi|37695668|gb|AAR00365.1| DnaE [Vibrio parahaemolyticus]
          Length = 149

 Score =  154 bits (389), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 80/154 (51%), Positives = 100/154 (64%), Gaps = 8/154 (5%)

Query: 283 FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQ 339
             +++    LP F  +       EE   L  K+  GLE RL         +     +Y +
Sbjct: 1   VTVRLGEYFLPAFPTE-----GMEETEFLVMKSREGLEERLEFLFPNEEERKKRRPEYDE 55

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
           RL  EL VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL 
Sbjct: 56  RLQIELYVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLE 115

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
           + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +
Sbjct: 116 YDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDH 149


>gi|319651828|ref|ZP_08005953.1| hypothetical protein HMPREF1013_02565 [Bacillus sp. 2_A_57_CT2]
 gi|317396480|gb|EFV77193.1| hypothetical protein HMPREF1013_02565 [Bacillus sp. 2_A_57_CT2]
          Length = 226

 Score =  153 bits (388), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 96/215 (44%), Gaps = 17/215 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SF+HL V+S+YSLL     +  ++     ++ PA+A+TD N ++ A+ F ++     I+P
Sbjct: 2   SFIHLHVYSAYSLLSSTARIEQLVSGARENRFPALALTDRNVMYGAVAFYKECLKQSIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I+           L +    +        +VLL    +G+Q L+++ S +    Q K   
Sbjct: 62  IL----------GLSVDVLSEISEGEAYPMVLLAKDRQGFQNLLKITSTV----QTKSPE 107

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
            I + WL+     GL  LT G  G I+          A++    F  LF     +  +Q 
Sbjct: 108 GIPVKWLKHYAG-GLFALTPGLDGEIEHYLEAGEYGQAKRIAELFSSLFEPHSFFFTIQD 166

Query: 189 HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSE 222
           H   +  +  + +VQL+    + L A+N   ++ +
Sbjct: 167 HGLREEKKNHELLVQLSGETGIGLAASNGVCYIKK 201


>gi|330880636|gb|EGH14785.1| error-prone DNA polymerase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 199

 Score =  153 bits (388), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 89/223 (39%), Gaps = 27/223 (12%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +  +  L   S++S   GA S   + ++ +     A+AITD   L   +   Q + + G+
Sbjct: 2   TSEYAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASISTGL 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             IIG ++ I+                  P  VLLV +  GY+ L +L++        K 
Sbjct: 62  PLIIGSEMHIENG----------------PKAVLLVESQTGYEALCKLITVARRR-ARKG 104

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             R+      E  ++GL+         I        +Q         ++ F +RL++ ++
Sbjct: 105 EYRLLREDF-EPSSDGLLA--------IWLPDIEGDAQACLAHGRWLRERFAERLWLGVE 155

Query: 188 RHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            HRG  D  R + ++ LA +  +P VA+ +    +       D
Sbjct: 156 LHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQD 198


>gi|325001989|ref|ZP_08123101.1| error-prone DNA polymerase [Pseudonocardia sp. P1]
          Length = 638

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 5/149 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +  L  HS +S L+GA +   ++++ A     AIA+TD + ++  + F++ A A GI+ 
Sbjct: 63  PYAELHCHSHFSFLDGASAPEELVERAAELGLEAIALTDHDGMYGVVRFAEAARALGIRT 122

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           + G +L + +        Q     P    ++LL    +GY+ L   +S   +    K   
Sbjct: 123 VFGAELSLGLS-----APQNGVADPEGEHLLLLARGPDGYRALCRTISTAQMRGGEKGRP 177

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
              L  +       +++LTG   G + RA
Sbjct: 178 VYDLDEVVADTAGRVVVLTGCRKGAVRRA 206


>gi|153873150|ref|ZP_02001825.1| polymerase III subunit alpha [Beggiatoa sp. PS]
 gi|152070383|gb|EDN68174.1| polymerase III subunit alpha [Beggiatoa sp. PS]
          Length = 170

 Score =  152 bits (384), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/118 (41%), Positives = 74/118 (62%), Gaps = 1/118 (0%)

Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
           +++KLEGL R+   HA G+VI    L+   P+Y +      +TQF+   +E  GL+KFDF
Sbjct: 1   MARKLEGLTRNPGKHAGGVVIAPTVLTDFTPLYCEADGSDLMTQFDKGDVEAVGLVKFDF 60

Query: 574 LGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
           LGL+TLT+++ +L+ +      K+D++ IP DD ETY L     T  +FQLESSG++ 
Sbjct: 61  LGLRTLTIIKWALEMIHDSTDKKIDIAKIPLDDPETYDLFKRADTTAVFQLESSGIKS 118


>gi|149001609|ref|ZP_01826582.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
 gi|147760067|gb|EDK67056.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
          Length = 350

 Score =  150 bits (380), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 126/351 (35%), Gaps = 57/351 (16%)

Query: 581 LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           +++K  D        +D + IP DD     L +    LG+   E  G    + G+     
Sbjct: 1   MIRKLQDL-----SGIDPNKIPMDDEGVMALFSGTDVLGVTP-EQIGTPTGMLGIPEFGT 54

Query: 641 EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-SIHPLIDPMLKETQGVIIYQEQVM--- 696
             +  +V    P     ++  +   +G +  + +   LI   + +   VI  ++ +M   
Sbjct: 55  NFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYL 114

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
             A L    + +  + +R+ +  KI EE   ++  +I     N + +    +  ++    
Sbjct: 115 MHAGLEPKMAFTIMERVRKGLWLKISEE---ERNGYIEAMKANKVPEWYIESCGKI---- 167

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-KIK------------ 803
             Y F K+HAAAY +++ + A+ K H+P+ +  A  ++     + K              
Sbjct: 168 -KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIRAKAFDIKTMGAGLEVIKRRME 226

Query: 804 ----------------------KFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLA 840
                                 +   +  +   +     +      +F +  + +     
Sbjct: 227 EISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKFGKLDLYCSQATEFLIDGDTLIPPFV 286

Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
           A+ G+G   A+ ++ A  +  F S  +   R     L+  ++E +   G L
Sbjct: 287 AMDGLGENVAKQLVRAREEGEFLSKTELRKR---GGLSSTLVEKMDEMGIL 334


>gi|218673335|ref|ZP_03523004.1| DNA polymerase III, alpha chain [Rhizobium etli GR56]
          Length = 251

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 100/250 (40%), Gaps = 30/250 (12%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           S+  LQV + +S L GA S   + +        A+ + D N+L   +   + + A G++ 
Sbjct: 2   SYAELQVTTHFSFLRGASSAQELFETAKQLGIEALGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           ++GC                +       S+++       Y RL  L++    L + +   
Sbjct: 62  VVGC----------------RLDLADGMSVLVYPMDRSAYSRLTRLIT----LGKSRGGK 101

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
             C+     +  + ++  + G  G I      +   +   +L    +LFGDR YV+L  R
Sbjct: 102 NNCI-----LHWDDIVAYSEGMIG-ILVPDLPD--DLCAIQLRKMAELFGDRAYVSLCLR 153

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
            R  D+ R  ++  +A   ++  V TN+ LF      +  D++  + H+T +        
Sbjct: 154 RRPNDQLRLHEISNMAARFKVRTVVTNDVLFHEPGRRQLQDIVTCIRHNTTIDDVGFERE 213

Query: 248 VTPDHYLKNR 257
              D YLK  
Sbjct: 214 RHADRYLKPP 223


>gi|302668628|ref|YP_003833076.1| DNA polymerase III-associated protein [Butyrivibrio proteoclasticus
           B316]
 gi|302397592|gb|ADL36494.1| DNA polymerase III-associated protein [Butyrivibrio proteoclasticus
           B316]
          Length = 480

 Score =  149 bits (376), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 31/254 (12%)

Query: 568 LIKFDFLGLKT---LTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
           L+K   + +K    L++++ +L+ +   +  ++D+  I   D   + LL +  T GI   
Sbjct: 214 LLKMADISIKEWVELSIIKDTLEIISRSKRERIDIVRIDKTDPAVFELLLSGETNGILFF 273

Query: 624 ES--------------------------SGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           +                           +G     E ++P  +++++A ++L RP   ++
Sbjct: 274 DKDDPHSYSTWWHLDDNGKWHEYHEPLVAGNAALYEVIRPKNMDELMAAITLDRPLSEEH 333

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           I  Y       + I    P ++ +L  T G +IYQEQ+M+I Q L G+S  ++D+ RR +
Sbjct: 334 IEKYLRNIKNSQYITYECPELETILSTTYGCVIYQEQIMRILQDLGGFSPEKSDLCRRDL 393

Query: 718 GKKIKEEMDKQKERFISGASKNGISK-TIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            K+ +  + + +E F+ GA+ + I    +A  IF++L   A Y FNKSH AA++++ Y+ 
Sbjct: 394 SKRKQFTIGEMREEFVYGATSSKIVGMDVANAIFDMLWDKARYSFNKSHVAAFSLMIYEM 453

Query: 777 AWMKTHYPVEFLAA 790
           AW+K +Y  EF+ A
Sbjct: 454 AWLKLYYRSEFMEA 467



 Score =  117 bits (293), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 8/137 (5%)

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            K     L      G   +            +D   RL  EL VI +    G FLI+ D 
Sbjct: 79  GKTAFGFLEELCHKGFSEKYPN-------VTEDVHARLAHELEVINKKGMVGGFLIIYDL 131

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM-PDFDIDF 422
           I++A+ NN+ + PG G+  GS+ AY L IT +DP++ +LLFER+LN  R +      ID 
Sbjct: 132 IEFARSNNLMISPGCGALPGSLVAYCLGITGVDPIKENLLFERYLNMGRETPSYCIRIDV 191

Query: 423 CQDRRDEVIRYVQNKYG 439
            +  +  +  Y+   YG
Sbjct: 192 EKGAKPLIFGYLTEMYG 208


>gi|222872380|gb|EEF09511.1| predicted protein [Populus trichocarpa]
          Length = 177

 Score =  148 bits (374), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 12/169 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL++H+ +S+++G   +N I+   A D Q A+A+TD NNLF  ++F ++  A G++P+
Sbjct: 19  FVHLRLHTEFSVVDGTNRINAIVKAAAEDGQVALAVTDFNNLFGGVKFYREGRAKGVKPV 78

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G ++ I+ ++              V  I++LV +  GY  L EL++R +  +  K    
Sbjct: 79  LGAEIQIEGENG-----------AAVSRIIVLVQSPLGYHNLSELLARGWTRNVVKGQAV 127

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
              +WLQE+G EGLI+L G  +GP+ +A        A         ++ 
Sbjct: 128 HTWAWLQELG-EGLIVLAGAQAGPVGQALMRGDEAGAAAVAQRLASIWP 175


>gi|134291535|ref|YP_001115304.1| phosphotransferase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134134724|gb|ABO59049.1| PHP C-terminal domain protein [Burkholderia vietnamiensis G4]
          Length = 208

 Score =  145 bits (367), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 12/181 (6%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AA + 
Sbjct: 10  PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAANMP 69

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            II          + ++T    +P     ++       +GY  L E +S   +  + K +
Sbjct: 70  LII--------GSHFRLTAADGSPALAFTAL---AMNRDGYGNLCEFISLGRMRGK-KGT 117

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            R+    L+        +        I    F  + Q  + ++  F ++FGDR +V L  
Sbjct: 118 YRLAPLDLEHPEAPYTHLRGLPDCIAILSPDFPANEQRLDAQVEWFARVFGDRAWVALTL 177

Query: 189 H 189
           H
Sbjct: 178 H 178


>gi|261883882|ref|ZP_06007921.1| DNA polymerase III PolC [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 267

 Score =  145 bits (366), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 79/230 (34%), Gaps = 45/230 (19%)

Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            + FE FL      +PD D++F  + +     Y +  +G E V +  T G++  K A   
Sbjct: 45  DIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEEYVYRAGTIGTVAEKTAYGY 104

Query: 461 VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
           V       YS  + L                              P    +  + Q   G
Sbjct: 105 V-----RGYSNDNNLT-----------------------------PRGAEIDRLVQGCTG 130

Query: 521 LYRHASTHAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
           + R    H  GI++      +    P+        S+   T F+   I    ++K D LG
Sbjct: 131 VKRTTGQHPGGIIVIPDYMDVHDFTPIQFPADAQDSEWKTTHFDFHSIHD-NVLKLDILG 189

Query: 576 LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
               T+++   D        ++   IP DD E   + +   +LG+ + + 
Sbjct: 190 HDDPTVIRMLQDL-----SGMEPKAIPVDDPEVMKIFSGTESLGVTEEQI 234


>gi|158316805|ref|YP_001509313.1| DNA-directed DNA polymerase [Frankia sp. EAN1pec]
 gi|158112210|gb|ABW14407.1| DNA-directed DNA polymerase [Frankia sp. EAN1pec]
          Length = 260

 Score =  144 bits (364), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 59/143 (41%), Positives = 94/143 (65%), Gaps = 4/143 (2%)

Query: 657 NIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           + + Y +RKNG++ +V +HP +    + +L  T  +++YQEQVM IA+ L+GYSL  AD+
Sbjct: 118 SHIEYADRKNGRKPVVPVHPELDGPLEDILGATYHLVVYQEQVMTIARELAGYSLGRADL 177

Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           LRRAMGKK K+ +D     F +G +  G S   A  ++++L  F+ Y FNKSH A Y V+
Sbjct: 178 LRRAMGKKKKDVLDAHHAEFTAGMTGRGYSAEAAQALWDVLVPFSGYRFNKSHTAGYGVV 237

Query: 773 SYQTAWMKTHYPVEFLAASMTLE 795
           ++ TA++K ++P E++AA +T  
Sbjct: 238 AFWTAYLKANFPAEYMAALLTSV 260


>gi|330900333|gb|EGH31752.1| error-prone DNA polymerase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 180

 Score =  144 bits (363), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 79/204 (38%), Gaps = 27/204 (13%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +  +  L   S++S   GA S   + ++       A+AITD   L   +   Q + + G+
Sbjct: 2   TSEYAELHCLSNFSFQRGASSARELFERALRHGYKALAITDECTLAGIVRAWQASKSTGL 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             I+G ++ I+                  P +VLLV    GY+ L  L++      + K 
Sbjct: 62  PLIVGSEMHIENG----------------PKVVLLVENQAGYEALCTLITVARRRAK-KG 104

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             R+     +      L +      G   +A   +            ++ F +RL++ + 
Sbjct: 105 EYRVLREDFEPAPDWLLALWLPDLDGD-AQACLADG--------RWLRERFTERLWLGVG 155

Query: 188 RHRGY-DRYRESQVVQLAYTHELP 210
            HRG  D  R + ++ LA +  +P
Sbjct: 156 LHRGPDDEQRLADLLALAQSLGIP 179


>gi|169836105|ref|ZP_02869293.1| DNA polymerase III, alpha subunit [candidate division TM7
           single-cell isolate TM7a]
          Length = 107

 Score =  142 bits (357), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 69/107 (64%), Positives = 82/107 (76%)

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                 GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLNPDR+SMPD DID    RR+
Sbjct: 1   STGHHFGPGRGSAAGSIIAYALNITDLDPLKYDLLFERFLNPDRVSMPDIDIDIQDTRRN 60

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
           EVI Y  NKYGHERVA I TFG++ A+A++RDV R LQ+PY + DRL
Sbjct: 61  EVIEYCANKYGHERVANICTFGTMAARASVRDVARVLQVPYGESDRL 107


>gi|307636097|gb|ADN78741.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636099|gb|ADN78742.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636101|gb|ADN78743.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636103|gb|ADN78744.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636105|gb|ADN78745.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636107|gb|ADN78746.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636109|gb|ADN78747.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636111|gb|ADN78748.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636113|gb|ADN78749.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636115|gb|ADN78750.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score =  142 bits (357), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 71/136 (52%), Positives = 87/136 (63%), Gaps = 8/136 (5%)

Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLD 342
           ++    LP F            E+ L  K+  GLE RL         +     +Y +RL 
Sbjct: 1   RLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQ 55

Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            ELNVI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + L
Sbjct: 56  VELNVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDL 115

Query: 403 LFERFLNPDRMSMPDF 418
           LFERFLNP+R+SMPDF
Sbjct: 116 LFERFLNPERVSMPDF 131


>gi|307636021|gb|ADN78703.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636023|gb|ADN78704.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636025|gb|ADN78705.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636027|gb|ADN78706.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O395]
 gi|307636029|gb|ADN78707.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636031|gb|ADN78708.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636033|gb|ADN78709.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636035|gb|ADN78710.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae C6706]
 gi|307636037|gb|ADN78711.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636039|gb|ADN78712.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636041|gb|ADN78713.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636043|gb|ADN78714.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636045|gb|ADN78715.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636047|gb|ADN78716.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636049|gb|ADN78717.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636051|gb|ADN78718.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636053|gb|ADN78719.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636055|gb|ADN78720.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636057|gb|ADN78721.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636059|gb|ADN78722.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636061|gb|ADN78723.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636063|gb|ADN78724.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636065|gb|ADN78725.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636067|gb|ADN78726.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636069|gb|ADN78727.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636071|gb|ADN78728.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636073|gb|ADN78729.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636075|gb|ADN78730.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636077|gb|ADN78731.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636079|gb|ADN78732.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636081|gb|ADN78733.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636083|gb|ADN78734.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636085|gb|ADN78735.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636087|gb|ADN78736.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636089|gb|ADN78737.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636091|gb|ADN78738.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636093|gb|ADN78739.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636095|gb|ADN78740.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636117|gb|ADN78751.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636119|gb|ADN78752.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636121|gb|ADN78753.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636123|gb|ADN78754.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636125|gb|ADN78755.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636127|gb|ADN78756.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636129|gb|ADN78757.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636131|gb|ADN78758.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636133|gb|ADN78759.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636135|gb|ADN78760.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636137|gb|ADN78761.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636139|gb|ADN78762.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636141|gb|ADN78763.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636143|gb|ADN78764.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636145|gb|ADN78765.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636147|gb|ADN78766.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636151|gb|ADN78768.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636153|gb|ADN78769.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636155|gb|ADN78770.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636157|gb|ADN78771.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636159|gb|ADN78772.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636161|gb|ADN78773.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636163|gb|ADN78774.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636165|gb|ADN78775.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636167|gb|ADN78776.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636169|gb|ADN78777.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636171|gb|ADN78778.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636173|gb|ADN78779.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636177|gb|ADN78781.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636179|gb|ADN78782.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score =  141 bits (356), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 70/136 (51%), Positives = 87/136 (63%), Gaps = 8/136 (5%)

Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLD 342
           ++    LP F            E+ L  K+  GLE RL         +     +Y +RL 
Sbjct: 1   RLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQ 55

Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + L
Sbjct: 56  VELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDL 115

Query: 403 LFERFLNPDRMSMPDF 418
           LFERFLNP+R+SMPDF
Sbjct: 116 LFERFLNPERVSMPDF 131


>gi|255030455|ref|ZP_05302406.1| hypothetical protein LmonL_17616 [Listeria monocytogenes LO28]
          Length = 193

 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 53/210 (25%), Positives = 102/210 (48%), Gaps = 18/210 (8%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +L    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PIIG         
Sbjct: 1   MLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPIIGMT------- 53

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
              +T QG         ++L+  +  GY +L+++ S +   ++G     +  SWL+   +
Sbjct: 54  ---VTIQGYLNPINSYELILIAESTAGYHQLLKIASAIQTREEG---PELPQSWLRAYSS 107

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRHRGYDRYRESQV 200
             LI+++ G+ G I+R       + A +      ++F  + +Y++ Q+    +    +++
Sbjct: 108 -DLIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQK---ENPRLFAKI 163

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              +    +P+VAT N  +L  +D +A +V
Sbjct: 164 ETFSSEENVPVVATKNVQYLEPKDAQAKEV 193


>gi|314927243|gb|EFS91074.1| hypothetical protein HMPREF9607_02750 [Propionibacterium acnes
           HL044PA1]
 gi|314970781|gb|EFT14879.1| hypothetical protein HMPREF9622_02070 [Propionibacterium acnes
           HL037PA3]
          Length = 262

 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 74/271 (27%), Positives = 115/271 (42%), Gaps = 14/271 (5%)

Query: 59  SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
           ++ A   GI  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2   AEAAEVCGIPTIIGSELSIGIPE-----PQNGVADPVGSHLLVLANGPEGYRRLTEALTD 56

Query: 119 MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            YL + G K      L  L E+      +LTG   G + R         AE  L     L
Sbjct: 57  AYLAEGGHKGHPVHNLDHLAEVADGHWTVLTGCRKGAV-RQGLAKGMPQAEAELRRLVDL 115

Query: 178 F-GDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           F    + V L  HR     R++ V+ +LA  H +  VAT  + +   E +E    L AV 
Sbjct: 116 FGIGNVLVELTDHRAPTDSRDNDVLAELASRHSVSTVATTAAHYAGAEQFELSCALSAVR 175

Query: 236 HSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
               + + D      P   L++ +EM  +FS   +A++NTV +A + +F LQ   P LP 
Sbjct: 176 ARRSLDEMDGWLPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAEKTAFHLQSVRPRLPE 235

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
               +         + LR+    G  V L +
Sbjct: 236 QKVPDG----HTPISWLRHLVEEGRRVLLRE 262


>gi|307636011|gb|ADN78698.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636013|gb|ADN78699.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636015|gb|ADN78700.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636017|gb|ADN78701.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636019|gb|ADN78702.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636181|gb|ADN78783.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 70/136 (51%), Positives = 87/136 (63%), Gaps = 8/136 (5%)

Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLD 342
           ++    LP F            E+ L  K+  GLE RL         +     +Y +RL 
Sbjct: 1   RLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQ 55

Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + L
Sbjct: 56  IELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDL 115

Query: 403 LFERFLNPDRMSMPDF 418
           LFERFLNP+R+SMPDF
Sbjct: 116 LFERFLNPERVSMPDF 131


>gi|307636005|gb|ADN78695.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636007|gb|ADN78696.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636009|gb|ADN78697.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636149|gb|ADN78767.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score =  141 bits (355), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 70/136 (51%), Positives = 87/136 (63%), Gaps = 8/136 (5%)

Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLD 342
           ++    LP F            E+ L  K+  GLE RL         +     +Y +RL 
Sbjct: 1   RLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPDVRAKRRPEYDERLQ 55

Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + L
Sbjct: 56  VELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDL 115

Query: 403 LFERFLNPDRMSMPDF 418
           LFERFLNP+R+SMPDF
Sbjct: 116 LFERFLNPERVSMPDF 131


>gi|307636175|gb|ADN78780.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score =  140 bits (354), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 70/136 (51%), Positives = 86/136 (63%), Gaps = 8/136 (5%)

Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLD 342
           ++    LP F            E+ L  K+  GLE RL         +     +Y +RL 
Sbjct: 1   RLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQ 55

Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + L
Sbjct: 56  VELDVINQMGFPGYFLIVMEFIQWSKDNYIPVGPGRGSGAGSLVAYALKITDLDPLEYDL 115

Query: 403 LFERFLNPDRMSMPDF 418
           LFERFLNP+R+SMPDF
Sbjct: 116 LFERFLNPERVSMPDF 131


>gi|307636195|gb|ADN78790.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score =  140 bits (354), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/136 (51%), Positives = 88/136 (64%), Gaps = 8/136 (5%)

Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLD 342
           ++    LP F  +         E+ L  K+  GLE RL         +     +Y +RL 
Sbjct: 1   RLGEYFLPNFPTE-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAQRRPEYDERLQ 55

Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + L
Sbjct: 56  IELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDL 115

Query: 403 LFERFLNPDRMSMPDF 418
           LFERFLNP+R+SMPDF
Sbjct: 116 LFERFLNPERVSMPDF 131


>gi|307636191|gb|ADN78788.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636193|gb|ADN78789.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score =  140 bits (354), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/136 (51%), Positives = 88/136 (64%), Gaps = 8/136 (5%)

Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLD 342
           ++    LP F  +         E+ L  K+  GLE RL         +     +Y +RL 
Sbjct: 1   RLGEYFLPNFPTE-----GMAIEDFLVMKSREGLEERLEFLFPNPEVRAQRRPEYDERLQ 55

Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + L
Sbjct: 56  IELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDL 115

Query: 403 LFERFLNPDRMSMPDF 418
           LFERFLNP+R+SMPDF
Sbjct: 116 LFERFLNPERVSMPDF 131


>gi|288549238|gb|ADC52798.1| putative cytoplasmic protein [Streptomyces platensis]
          Length = 281

 Score =  140 bits (354), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 6/158 (3%)

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            +ESL+ AG  D   +SR  L    ++       V+K  +   +++FA   G  S      
Sbjct: 1    MESLIKAGTFDSLQHSRKGLTAIHEDAIDAVIPVKKAASFGQDDLFADLGGEGSSVAPFG 60

Query: 942  -----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-NI 995
                   +          E+ +LG Y S HPLD  + IL         E +A+ R   ++
Sbjct: 61   LDFAIDDTEWPRRQLLATERDMLGLYVSAHPLDGAEHILSGARDCSIAELLASGRTTGDV 120

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +L+ ++   Q K T++G+    V   +     E  FFP
Sbjct: 121  QLSGLITGIQLKMTKQGNAWAIVNLVDRDAGIEVLFFP 158


>gi|5912340|emb|CAB56071.1| DNA polymerase III alpha subunit [Rickettsia felis]
          Length = 386

 Score =  140 bits (354), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 107/253 (42%), Gaps = 16/253 (6%)

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP E +   +  E   ++         R     I     +     +    + I ++L AI
Sbjct: 27   YP-EKVKTVLNHESMKMDS--------RFCGNDIKGSRNDIEDTGYDKEKSTIIFALGAI 77

Query: 843  KGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGV     + +  E  A   F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QL
Sbjct: 78   KGVTPNFGKLVTDERKARGAFKSITDFIERLPLKSINSKLLENLIKSGCFDELHDNRLQL 137

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
              S+  +  Y+      + +   ++   +  + S  I +     +N+++ F  E   +G 
Sbjct: 138  FSSISKLLAYSASYHAEQESNQFSL--IKVSSLSPNILIASDYADNNTLAF-YEFESMGL 194

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESV-ATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            + S HPL  Y+ I  ++ I    +       G N + LA ++  K  + + +G R   + 
Sbjct: 195  FISNHPLTQYQEIFSRLNILNTADLHNNLPDGTNRVNLAGVIQKKDSRMSARG-RFVTLV 253

Query: 1020 FSEPAKEYEANFF 1032
             S+P   +E + F
Sbjct: 254  LSDPENIFELSIF 266


>gi|307636183|gb|ADN78784.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636185|gb|ADN78785.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636187|gb|ADN78786.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636189|gb|ADN78787.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score =  140 bits (354), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/136 (51%), Positives = 86/136 (63%), Gaps = 8/136 (5%)

Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLD 342
           ++    LP F            E+ L  K+  GLE RL         +     +Y  RL 
Sbjct: 1   RLGEYFLPNFPTG-----GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDDRLQ 55

Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + L
Sbjct: 56  VELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDL 115

Query: 403 LFERFLNPDRMSMPDF 418
           LFERFLNP+R+SMPDF
Sbjct: 116 LFERFLNPERVSMPDF 131


>gi|255018386|ref|ZP_05290512.1| hypothetical protein LmonF_13006 [Listeria monocytogenes FSL
           F2-515]
          Length = 161

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 14/172 (8%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+P
Sbjct: 2   GFVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIG            +T QG         ++L+  +  GY +L+++ S +   ++G    
Sbjct: 62  IIGMT----------VTIQGYLNPINSYELILIAESTAGYHQLLKIASAIQTREEG---P 108

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
            +  SWL+   +  LI+++ G+ G I+R       + A +      ++FG  
Sbjct: 109 ELPQSWLRAYSS-DLIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKE 159


>gi|5912303|emb|CAB56087.1| DNA polymerase III alpha subunit [Rickettsia prowazekii]
 gi|5912308|emb|CAB56091.1| DNA polymerase III alpha subunit [Rickettsia prowazekii]
          Length = 361

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 92/200 (46%), Gaps = 7/200 (3%)

Query: 836  YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             ++L AIKGV     + +  E  A   F S+ DF  R+  K +N ++LE+L+ AG  D  
Sbjct: 46   IFALGAIKGVTANFGKLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKAGCFDEL 105

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R+QL  S+  +  Y+    + + +   ++   +  + S  I +     + +++ F  
Sbjct: 106  HDNRLQLFLSIPKLIAYSTSYHQEQESNQFSL--IKVSSLSPTILVSSDYADKNTLAF-Y 162

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKG 1012
            E   +G + S HPL  Y+ I  ++ I    +    +    N + LA ++  K  + + +G
Sbjct: 163  EFEAMGLFLSNHPLTEYQGIFSRLNILNTRDLYNKLPNGTNRVTLAGVIQKKDSRMSARG 222

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
             R   +  S+P   +E   F
Sbjct: 223  -RFVTLVLSDPENIFELTIF 241


>gi|41019060|gb|AAR98502.1| DNA polymerase III alpha subunit [Pasteuria penetrans]
          Length = 199

 Score =  140 bits (352), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 13/198 (6%)

Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
           ++    + +  + IP          A      FR  +L +P    L    Q   GL R  
Sbjct: 1   KVSKELLKQWLQWIPRTS--TTLEVAFQSAPAFRR-QLEEPVYTTLRTFLQHWVGLPRQV 57

Query: 526 STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            TH AG++I  R L +  P+     +   + Q++M  + K G +K D LGL+ L +L   
Sbjct: 58  VTHPAGVIITSRSLVEQFPLEVGTHAMWRI-QYDMHVLRKLGFLKLDILGLRHLAILD-- 114

Query: 586 LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
                   ++   S IP  D  TY LL    T+G+FQ+ES GMR+ L  ++P  ++D++ 
Sbjct: 115 -------SIRSVQSHIPDGDAATYQLLARGDTVGLFQVESPGMRRLLRTIRPTRLDDLMD 167

Query: 646 LVSLYRPGPIDNIVVYNN 663
           +++L+RPG       Y  
Sbjct: 168 ILALHRPGTQAYANRYLR 185


>gi|257463850|ref|ZP_05628237.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
          Length = 289

 Score =  140 bits (352), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 1/162 (0%)

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            +  + LN++ LE+ ++AGALD    +R + ++SLD +  Y Q   K    +  N+F   K
Sbjct: 1    MRKEGLNKKGLEAFIYAGALDSLPGNRHEKIESLDKVLDYVQRKSKADDIQQMNLFGDSK 60

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                 + +L +       +  E E+  LGFY S +PLD Y+ + R               
Sbjct: 61   KNLI-QFSLPQLEEYPMDILLEKEKEFLGFYVSANPLDKYENLYRSFEFDELNVLKEEHT 119

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               + L  +V + ++ +T+KG  + +        +     FP
Sbjct: 120  EKEVWLYGIVQNLKKTRTKKGDPMAFADLENYQGQIPTVIFP 161


>gi|5912321|emb|CAB56106.1| DNA polymerase III alpha subunit [Rickettsia sibirica]
          Length = 360

 Score =  139 bits (350), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 95/203 (46%), Gaps = 7/203 (3%)

Query: 833  NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I ++L AIKGV     + +  E  A   F S+ DF  R+  K +N ++LE+L+ +G  
Sbjct: 42   GAIIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCF 101

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R+QLL S+  +  Y+    + + +   ++   +  + S  I +     + +++ 
Sbjct: 102  DELHDNRLQLLSSIPKLLSYSTAYHEEQESNQFSL--IKVSSLSPTILVSSDYADKNTLA 159

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-ATIRG-NNIRLAAMVVSKQQKKT 1009
            F  E   +G + S HPL  Y+ I  ++ I    +       G N + LA ++  K  + +
Sbjct: 160  F-YEFEAMGLFISNHPLTEYQEIFSRLNILNIADLHNNLPDGTNRVNLAGVIQKKDSRMS 218

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
             +G R   +  S+P   +E + F
Sbjct: 219  ARG-RFVTLVLSDPENIFELSIF 240


>gi|5912334|emb|CAB56077.1| DNA polymerase III alpha subunit [Rickettsia helvetica]
          Length = 357

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 95/202 (47%), Gaps = 7/202 (3%)

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I ++L AIKGV     + +  E  A  PF S+ DF  R+  K +N ++LE+L+ +G  D
Sbjct: 41   AIIFALGAIKGVTPNFGKLVTDERKARGPFKSITDFIERLPPKSINSKLLENLIKSGCFD 100

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                +R+QL  S+  +  Y+    + + +   ++   +  + S  I +     + +++ F
Sbjct: 101  ELHDNRLQLFSSIPKLLSYSTSYHEEQESNQLSL--IKVSSLSPTILVSSDYADKNTLAF 158

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRG-NNIRLAAMVVSKQQKKTR 1010
              E   +G + S HPL  Y+ I  ++ I    +       G N + LA ++  K  + + 
Sbjct: 159  -YEFEAMGLFISNHPLTQYQEIFSRLNILNTADLYNNLPEGTNRVNLAGVIQKKDSRMSA 217

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G R   +  S+P   +E + F
Sbjct: 218  RG-RFVTLVLSDPENIFELSIF 238


>gi|5912317|emb|CAB56101.1| DNA polymerase III alpha subunit [Rickettsia rickettsii]
          Length = 360

 Score =  138 bits (348), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 95/203 (46%), Gaps = 7/203 (3%)

Query: 833  NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I ++L AIKGV     + +  E  A   F S+ DF  R+  K +N ++LE+L+ +G  
Sbjct: 42   GAIIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCF 101

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R+QLL S+  +  Y+    + + +   ++   +  + S  I +     + +++ 
Sbjct: 102  DELHDNRLQLLSSIPKLLSYSTAYHEEQESNQFSL--IKVSSLSPTILVSSDYADKNTLA 159

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-ATIRG-NNIRLAAMVVSKQQKKT 1009
            F  E   +G + S HPL  Y+ I  ++ I    +       G N + LA ++  K  + +
Sbjct: 160  F-YEFEAMGLFISNHPLTEYQEIFSRLNILNTADLHNNLPDGTNRVNLAGVIQKKDSRMS 218

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
             +G R   +  S+P   +E + F
Sbjct: 219  ARG-RFVTLVLSDPENIFELSIF 240


>gi|5912329|emb|CAB56096.1| DNA polymerase III alpha subunit [Rickettsia rhipicephali]
          Length = 360

 Score =  138 bits (348), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 49/203 (24%), Positives = 90/203 (44%), Gaps = 7/203 (3%)

Query: 833  NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I ++L AIKGV     + +  E  A   F S+ DF  R+  K +N ++LE+L+ +G  
Sbjct: 42   GAIIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCF 101

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R+QLL S+  +  Y+    + + +   ++    K +      L      + +  
Sbjct: 102  DELHDNRLQLLSSIPKLLSYSTSYHEEQESNQFSL---IKVSSLSPTVLVSSDYADKNTL 158

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-ATIRG-NNIRLAAMVVSKQQKKT 1009
               E   +G + S HPL  Y+ I  ++ I    +       G N + LA ++  K  + +
Sbjct: 159  AFYEFEAMGLFISNHPLTEYQEIFSRLNILNTADLHNNLPDGTNRVNLAGVIQKKDSRMS 218

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
             +G R   +  S+P   +E + F
Sbjct: 219  ARG-RFVTLVLSDPENIFELSIF 240


>gi|5912325|emb|CAB56082.1| DNA polymerase III alpha subunit [Rickettsia montanensis]
          Length = 360

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 95/203 (46%), Gaps = 7/203 (3%)

Query: 833  NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I ++L AIKGV     + +  E  A   F S+ DF  R+  K +N ++LE+L+ +G  
Sbjct: 42   GAIIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCF 101

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R+QLL S+  +  Y+    + + +   ++   +  + S  I +     + +++ 
Sbjct: 102  DELHDNRLQLLSSIPKLLSYSTSYHEEQESNQFSL--IKVSSLSPTILVSSDYADKNTLA 159

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-ATIRG-NNIRLAAMVVSKQQKKT 1009
            F  E   +G + S HPL  Y+ I  ++ I    +       G N + LA ++  K  + +
Sbjct: 160  F-YEFEAMGLFISNHPLTEYQEIFSRLNILNTADLHNNLPDGTNRVNLAGVIQKKDSRMS 218

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
             +G R   +  S+P   +E + F
Sbjct: 219  ARG-RFVTLVLSDPENIFELSIF 240


>gi|289609822|emb|CBI60377.1| unnamed protein product [Sordaria macrospora]
          Length = 119

 Score =  138 bits (347), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 61/113 (53%), Positives = 83/113 (73%), Gaps = 1/113 (0%)

Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
           +PVTQF+MK++E AGL+KFDFLGLKTL++L+ +++ LA+RG+ VDL  + +DD  TY LL
Sbjct: 1   MPVTQFDMKYVEGAGLVKFDFLGLKTLSVLKFAVELLARRGIVVDLDSLLWDDEATYELL 60

Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
               T+G+FQLES GMR+ L  ++P    DIIALVSLYRPG    I  +  R+
Sbjct: 61  KRGDTVGVFQLESEGMRRTLTAVRPTNFGDIIALVSLYRPGRWTTIP-FVRRR 112


>gi|5912313|emb|CAB56110.1| DNA polymerase III alpha subunit [Rickettsia typhi]
          Length = 359

 Score =  138 bits (347), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 92/200 (46%), Gaps = 7/200 (3%)

Query: 836  YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             ++L AIKGV     + +  E  A   F S+ DF  R+  K +N ++LE+L+ AG  D  
Sbjct: 44   IFALGAIKGVTPNFGKLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKAGCFDEL 103

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R+QL  S+  +  Y+    + + +   ++   +  + S  I +     + +++ F  
Sbjct: 104  HDNRLQLFLSVPKLIAYSTSYHQEQESNQFSL--IKVSSLSPTILVSSNYADKNTLAF-Y 160

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKG 1012
            E   +G + S HPL  Y+ I  ++ I    +    +    N + LA ++  K  + + +G
Sbjct: 161  EFESMGLFISNHPLTEYQEIFSRLNILNTRDLYNKLPNGTNQVTLAGVIQKKDSRMSARG 220

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
             R   +  S+P   +E   F
Sbjct: 221  -RFVTLVLSDPENIFELTIF 239


>gi|318061956|ref|ZP_07980677.1| DNA polymerase III subunit alpha [Streptomyces sp. SA3_actG]
 gi|318079883|ref|ZP_07987215.1| DNA polymerase III subunit alpha [Streptomyces sp. SA3_actF]
          Length = 333

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/337 (20%), Positives = 113/337 (33%), Gaps = 39/337 (11%)

Query: 5   LEKSPS-----FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
           + +SP      F HL+  S  S   GA     +  + A     A+A+TD + +  A+ F+
Sbjct: 1   MTRSPGLSGLGFAHLRTVSGNSARYGASHPEALAARAAERDMDAVALTDRDTVAGAVRFA 60

Query: 60  QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP---------FPTVPSIVLLVST-AEGY 109
           +     G++P+ G  L +D+         G+             + P +  L    A G+
Sbjct: 61  KACAEEGVRPLFGVDLAVDVPATRDARGGGRRRAPVRGGAFIDESAPRVTFLARDGARGW 120

Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
             L  LV+  +   +     R  L        EGL +L G  S  I RA        A +
Sbjct: 121 ASLCALVTAAHARGE-----RPPLLPWDANHGEGLTVLLGPES-DIGRALAAGRPDRAAR 174

Query: 170 RLLTFKKLFGDRLYVNLQRHR----GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEED 224
            L  +++ +GD L +    H     G    R  ++ V  A    +  V TN   +     
Sbjct: 175 LLAPWRERYGDALRLEAVHHGRGGTGPGSLRLAARTVGFAAEQGVRPVLTNAVRYADPGQ 234

Query: 225 YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL-----------EN 273
               DVL A     V     +   + + +LK+   M      +  A             +
Sbjct: 235 GRIADVLDAAR-RLVPIDPAKGLDSGERWLKDAGLMAREAERITTAAGFGPDAAAALLAH 293

Query: 274 TVEIARRCSFILQVHAPILP-RFIEKECDDIQKEEEN 309
           T   A  C    +    +   RF E       +    
Sbjct: 294 TARTAAECLVDPEDDLGLGSVRFPEPRLVGAGRRTAQ 330


>gi|312978245|ref|ZP_07789989.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus
           crispatus CTV-05]
 gi|310894963|gb|EFQ44033.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus
           crispatus CTV-05]
          Length = 836

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 91/235 (38%), Gaps = 19/235 (8%)

Query: 93  FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                 + +L     G + L +LVS     D  +   R   S L  +   GL+  +G   
Sbjct: 606 RARPSHMTVLAKDQAGLKNLYKLVSIASTKDFFRI-PRTPKSDLARLHD-GLLYGSGCWQ 663

Query: 153 GPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHR---GYDRYRE--SQVVQLAY 205
           G +  A        A ++   +   ++     Y  L         D+  E    +++L  
Sbjct: 664 GDVFIAMMQKGYDEAREKAKFYDYLEVQPPATYSQLIADGLIKDEDQLHEIIENIIKLGK 723

Query: 206 THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
               P+VAT+++ ++ ++D     +L+A       S   R +  PD +  +  EM+  FS
Sbjct: 724 ELNKPVVATSDAHYVDQKDAIYRKILIAAQ----RSNPSRNKPQPDLHFYSTQEMLDAFS 779

Query: 266 DLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
            L E       ++NT +IA   S I  +   + P  IE   ++++K   ++    
Sbjct: 780 FLGEDVAKKIVIDNTNKIADELSEIQPIKDGLYPPHIEHADEEMKKLTYDKAYEL 834



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%)

Query: 2   TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           T+  E  P  V L VH++ S ++   +  + +       Q AIAITD  ++ S  E    
Sbjct: 323 TEKYEGEPKRVELHVHTNMSQVDATNTPTDFIKTAKKFGQKAIAITDHGDVQSFPEAYSS 382

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
             A  ++ + G + ++     L + N     +     ++  V T
Sbjct: 383 GKALDMKILYGVEANMIDDHALLVLNPAPMTYEDREFVIFDVET 426


>gi|218660311|ref|ZP_03516241.1| DNA polymerase III protein, alpha subunit [Rhizobium etli IE4771]
          Length = 240

 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 12/197 (6%)

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
           + G DR   + +  LA  + +PL+ATN  L+   E     DV++A+     +SQ      
Sbjct: 49  YDGRDRQVFAVLAMLAARNRVPLIATNQPLYHHPERRPLSDVVIAIREHVQISQAGFLLA 108

Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              + YLK+  EM+ IF D P+A+ENT     + +F L+      P       +D  +  
Sbjct: 109 PNAERYLKDSREMMRIFGDYPDAVENTQVFFGKLTFSLKELQHNYPP-----ENDPGETP 163

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
           +  L     AG   R   G   K        Q++D+EL +I    ++ YFL V   IQ A
Sbjct: 164 QQTLERLTRAGAARRYPGGVPPK------VAQQIDYELKLIGDKNYASYFLTVHRIIQHA 217

Query: 368 KKNNIPVGPGRGSGAGS 384
           + +   +  GRGS    
Sbjct: 218 RYDLKVLCQGRGSAGKF 234


>gi|309797646|ref|ZP_07692033.1| uracil-DNA glycosylase, family 4 [Escherichia coli MS 145-7]
 gi|308118743|gb|EFO56005.1| uracil-DNA glycosylase, family 4 [Escherichia coli MS 145-7]
          Length = 389

 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 9/165 (5%)

Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
           NG++   A  I+ +  K   Y FNKSH+ AY++ISYQ+ W+KTHYP EF AA++T+    
Sbjct: 11  NGLTHERAEEIWNMFEKSGAYAFNKSHSVAYSLISYQSMWLKTHYPAEFFAAALTI--LG 68

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHI 853
            +K +   +DA  + I+++PP VN      ++     G   +Y   +A+KG      + I
Sbjct: 69  EDKHQGLVKDALTYGIRVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGCQAI 128

Query: 854 MEASA--DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
           M A       F+SL  F   V+ +  N RV ESL   GA      
Sbjct: 129 MRAREKVGGKFESLAQFEEAVEKRACNSRVRESLQKVGAFASIEP 173


>gi|167717944|ref|ZP_02401180.1| error-prone DNA polymerase [Burkholderia pseudomallei DM98]
          Length = 131

 Score =  132 bits (331), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129 VRICLSWL 136
            R+    L
Sbjct: 124 YRLTPRML 131


>gi|323934239|gb|EGB30663.1| uracil DNA glycosylase superfamily protein [Escherichia coli E1520]
          Length = 389

 Score =  131 bits (330), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 9/165 (5%)

Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
           NG++   A  I+ +  K   Y FNKSH+ AY++ISYQ+ W+KTHYP EF AA++T+    
Sbjct: 11  NGLTHERAEEIWNMFEKSGAYAFNKSHSVAYSLISYQSMWLKTHYPAEFFAAALTI--LG 68

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHI 853
            +K +   +DA  + I+++PP VN      ++     G   +Y   +A+KG      + I
Sbjct: 69  EDKHQGLVKDALTYGIRVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGCQAI 128

Query: 854 MEASA--DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
           M A       F+SL  F   V+ +  N RV ESL   GA      
Sbjct: 129 MRAREKVGGKFESLAQFEEAVEKRACNSRVRESLQKVGAFASIEP 173


>gi|294635139|ref|ZP_06713648.1| DNA polymerase III, alpha subunit [Edwardsiella tarda ATCC 23685]
 gi|291091444|gb|EFE24005.1| DNA polymerase III, alpha subunit [Edwardsiella tarda ATCC 23685]
          Length = 264

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 2/135 (1%)

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             L+ SL++  K A+   +       ++F    +     + +          +  + E+  
Sbjct: 1    ALMSSLNDALKAAEQHARAEAIGQADMFGVLAEEPEQVEKSYGSVPPWPPQMVLDGERET 60

Query: 959  LGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            LG Y +GHP+  Y   + +  G    ++   T RG       +V+  +   T++G+RIG 
Sbjct: 61   LGLYLTGHPITQYLKEIERYAGGGRLKDMHPTERGKMTTAVGLVLGARVMTTKRGNRIGM 120

Query: 1018 VTFSEPAKEYEANFF 1032
             T  + +   E   F
Sbjct: 121  CTLDDRSGRLEVMLF 135


>gi|46143201|ref|ZP_00135688.2| COG0587: DNA polymerase III, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 131

 Score =  129 bits (324), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/121 (49%), Positives = 82/121 (67%), Gaps = 7/121 (5%)

Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDP 680
           M+  + G   DC EDIIALV+L+R GP+++ +   + +RK+G E++        H  + P
Sbjct: 1   MKDLISGGGHDCFEDIIALVALFRTGPLESGMVQNFIDRKHGHEEVSYPDAQYQHESLKP 60

Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
           +L  T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM  Q+E F  GA K G
Sbjct: 61  ILDPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQG 120

Query: 741 I 741
           +
Sbjct: 121 V 121


>gi|58698588|ref|ZP_00373486.1| DNA polymerase III, alpha subunit, form 1, putative [Wolbachia
            endosymbiont of Drosophila ananassae]
 gi|58534884|gb|EAL58985.1| DNA polymerase III, alpha subunit, form 1, putative [Wolbachia
            endosymbiont of Drosophila ananassae]
          Length = 292

 Score =  128 bits (322), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 11/170 (6%)

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
              + +F        +N+R LESL+ +GA D    +R QL +S+D +  +A   +++R + 
Sbjct: 9    KDIWEFIQ-NSGHIINKRALESLIKSGAFDSVHKNRKQLYESMDTLIYFANKNKQDRESS 67

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
               +F         K  LE     +   + E+E   LGFY + HPL+ ++ +L K+ I  
Sbjct: 68   QAALFGSLDVL---KPKLENVEDFDEEEKLEHELFSLGFYLTNHPLEKFRTLLEKLNIGF 124

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              E          + A ++++ + + + +G R   +T S+P    E  F+
Sbjct: 125  IGE------NRTAKTAGVILNARMRTSERG-RFVILTLSDPHNVSEIAFY 167


>gi|167470312|ref|ZP_02335016.1| DNA polymerase III [Yersinia pestis FV-1]
          Length = 290

 Score =  128 bits (321), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 59/168 (35%), Positives = 86/168 (51%), Gaps = 11/168 (6%)

Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
           + G+S+T A  I++   K   Y FNKSH  AY++ISYQ+ W+KTHYP EF AA++T+   
Sbjct: 46  QPGLSETKAKEIWDAFEKNGAYQFNKSHPVAYSLISYQSMWLKTHYPAEFFAAALTI--L 103

Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARH 852
             +K +   +DA  + I ++PP VN      ++     G   +Y   +A+KG      + 
Sbjct: 104 GEDKHQGLVKDALTYGIHVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGCQA 163

Query: 853 IMEASA--DKPFDSLEDFCSRVDSK--KLNRRVLESLVFAGALDCFGY 896
           IM A       F+SLE F   V+ +    N RV ESL   GA      
Sbjct: 164 IMRAREKVGGKFESLEQFEEAVEKRACACNSRVRESLQKVGAFASIEP 211


>gi|3287186|emb|CAA75320.1| DNA polymerase III alpha chain-like protein [Lactococcus lactis
           subsp. cremoris]
          Length = 281

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 108/293 (36%), Gaps = 62/293 (21%)

Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM-- 696
              D++ +  L     + +               +   LI   + +   VI  ++ +M  
Sbjct: 1   NFADLLQISGLSHGTDVWSG--------------NAQDLIRSGIADLSSVIGCRDDIMVY 46

Query: 697 -QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
                L +G + +  + +R+ M  KI  E   ++E+++    ++ + +    +  ++   
Sbjct: 47  LIHKGLENGLAFTIMERVRKGMWNKIPAE---EREKYVEAMREHEVPEWYIESCSKI--- 100

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKKFC 806
              Y F K+HAAAY +++ + A+ K H+P+ +  A  ++     +          +K   
Sbjct: 101 --KYMFPKAHAAAYIMMALRVAYFKVHHPIFYYCAWFSIRATAFDIGVMGAGLEAVKSKM 158

Query: 807 QDARQFNIQIMPPSVN-------------------------TPCVDFKVGDNRIYYSLAA 841
           ++ +    +      N                         +   +F +  + +      
Sbjct: 159 KEIKDKGFEATNVETNLYTTLELCNEMLERGFTFGKIDLYRSEATEFVIDGDTLIPPFVT 218

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
           + G+G   A+ I+ A A+  F S  +   R     +++ ++E++   G L+  
Sbjct: 219 MDGLGENVAKQIVAARAEGEFLSKMELRKR---GGVSQTIIENMTNMGVLEGM 268


>gi|266625917|ref|ZP_06118852.1| DNA polymerase III, alpha subunit [Clostridium hathewayi DSM 13479]
 gi|288862187|gb|EFC94485.1| DNA polymerase III, alpha subunit [Clostridium hathewayi DSM 13479]
          Length = 333

 Score =  126 bits (317), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 93/266 (34%), Gaps = 31/266 (11%)

Query: 56  LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
           ++F Q     G++ +        M   +               ++++ +   G   L +L
Sbjct: 77  VKFVQMLRERGVETLTELNSLKTMTPEMIKKLP-------TYHVIIIATNDVGRVNLYKL 129

Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           +S  ++ D   +  RI  S L +   EGLI+ +   +G + +A     S     RL+ F 
Sbjct: 130 ISWSHI-DYYARRPRIPKSLLNQ-NREGLIVGSACEAGELYQALLRGGSNAEIARLVRFY 187

Query: 176 KLFGDRLYVNLQRHRGYDR----------YRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
                +   N       ++              ++V+L      P+ AT +  FL  ED 
Sbjct: 188 DYLEIQPLGNNSFMLRDEKSTVNSEQDLIDINKKIVELGDQFGKPVCATCDVHFLDPEDE 247

Query: 226 EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIAR 279
               ++MA        +          YL+   EM+  F  L         + NT +IA 
Sbjct: 248 VYRRIIMAGQGFKDSDE------QAPLYLRTTEEMLKEFEYLGPNKAEEVVIRNTRKIAD 301

Query: 280 RCSFILQVHAPILPRFIEKECDDIQK 305
            C  I  V     P  IE    D+++
Sbjct: 302 MCEKISPVRPDKCPPVIENSDGDLRQ 327


>gi|320093662|ref|ZP_08025540.1| error-prone DNA polymerase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979385|gb|EFW10869.1| error-prone DNA polymerase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 219

 Score =  124 bits (311), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 10/215 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L  HS+++ L+G      ++         A+A+ D + + SA+  +  A  AG+ 
Sbjct: 6   PRYAELHAHSAFTFLDGTCEPAEMVRAAQGLGLEALAVLDVDGMHSAVRTTMAAREAGLP 65

Query: 69  PIIGCQLDIDMQD-NLKMTNQGKTPFPTVP-------SIVLLVSTAEGYQRLIELVSRMY 120
            + G +L ID       +   G   +   P        + +L ++ +GY  L+  +S   
Sbjct: 66  IVHGSELTIDASSLRPALPGAGGPGWGLRPGAHDPGVRLPVLAASPQGYSALVSAMSDHA 125

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-G 179
           L   G++     L  L        ++LTG   GP+ RA   + +  A + L +   LF  
Sbjct: 126 LSRPGRRDSSHRLDDLSGRAR-DWLVLTGSGRGPLRRALRSHGTAGARRVLDSLVDLFGR 184

Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVAT 214
           D + V +QR  G        +  LA T  L LVAT
Sbjct: 185 DAVVVEVQRRAGDGPEEADALAGLARTRGLRLVAT 219


>gi|461952|sp|P34699|DPO3A_SACEN RecName: Full=DNA polymerase III subunit alpha
          Length = 264

 Score =  123 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 9/136 (6%)

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK------FSVENSSVRFENEQRVLG 960
                    +++ +     ++F        ++ +                     E+ +LG
Sbjct: 1    RAVDAVIGLKRQQALGQFDLFGGGDDAGGEESSSPLAHLQFTPDEWPRKQMLSYEREMLG 60

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIR---GNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             Y S HPLD  + +L      G  E V   R    + +++A M+   Q++  + G     
Sbjct: 61   LYVSAHPLDGAERLLAPYQDTGIAELVGGEREAGKDQVKIAGMISGIQRRINKNGHPWAI 120

Query: 1018 VTFSEPAKEYEANFFP 1033
            VT  +     E  FFP
Sbjct: 121  VTLEDLDASVEVLFFP 136


>gi|167947394|ref|ZP_02534468.1| hypothetical protein Epers_12972 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 120

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/101 (53%), Positives = 72/101 (71%)

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           +LRRAMGKK  EEM KQ+  F  GA  NGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 1   MLRRAMGKKKPEEMAKQRAVFKEGAENNGIDAELAMKIFDLVEKFAGYGFNKSHSAAYAL 60

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           +SYQT W+K HYP  F+AA  + +MDN +K+     ++R+ 
Sbjct: 61  VSYQTMWLKAHYPAAFMAAVCSADMDNTDKVVPLIDESRRM 101


>gi|2956673|emb|CAA04471.1| DNA-polymeraseIII [Rhodobacter capsulatus]
          Length = 105

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 5/109 (4%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             P F+HL+VH+ YSLLEGA+ +  ++    A   PAIA+TDTN +F+ALEFS  A  AG
Sbjct: 2   SDPRFIHLRVHTEYSLLEGAVPVKKLIKLCDAMNMPAIAVTDTNAMFAALEFSVLAQGAG 61

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
           +QPI+GCQ+ +  +    +   G+ P    P +VLL     GY  L++L
Sbjct: 62  LQPIVGCQVSVAYE----VAAPGEKPRLPAP-VVLLAQNEAGYMNLMKL 105


>gi|218680309|ref|ZP_03528206.1| DNA polymerase III, alpha subunit [Rhizobium etli CIAT 894]
          Length = 179

 Score =  121 bits (303), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 76/207 (36%), Gaps = 29/207 (14%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +     +  LQV S +S L GA S   +  + A     A+A+ D N+L   +   + A  
Sbjct: 1   MTSPARYAELQVTSHFSFLRGASSCEEMFAQAAIQGIEAVAVVDRNSLAGIVRAFEAAKT 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G++ I+GC                +       SI++  +    Y RL  L+S   L  +
Sbjct: 61  TGVRLIVGC----------------RLDLADGASILVYPTDRAAYGRLCRLLS---LGKK 101

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                +  L W           L   S G I       + +    RL   +   GDR Y+
Sbjct: 102 RGGKAKCILEWAD---------LVAYSDGLIGILVPDEADETCGLRLRRLRDTLGDRAYL 152

Query: 185 NLQ-RHRGYDRYRESQVVQLAYTHELP 210
            L  R R  D+ R  ++  LA    +P
Sbjct: 153 ALTLRRRPNDQLRVHKLSNLAAQMRVP 179


>gi|148996698|ref|ZP_01824416.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70]
 gi|147757273|gb|EDK64312.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70]
          Length = 910

 Score =  121 bits (303), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 99/297 (33%), Gaps = 36/297 (12%)

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
           N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHRGYDRYRESQ 199
           EGLI+ +  S G +           A +    +   ++    +Y  L          E Q
Sbjct: 659 EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQ 718

Query: 200 -----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-------MAVAHSTVVSQKDRPR 247
                ++++      P++AT N  ++  E+    +++         +  +    +  +P 
Sbjct: 719 TIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPA 778

Query: 248 VTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             P  + +  +EM+  F+ L E       +ENT  +A     +  V   +   FI+K  +
Sbjct: 779 PLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFESVEVVKGDLYTPFIDKAEE 838

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            + +        KA            I           R++ EL  I    F+    
Sbjct: 839 TVAELT----YKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIIW 881



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVFDVETT----GLSAIYNDLIQVAA 447

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++  E+ L  F++   D +
Sbjct: 448 SKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV--KNAKPLEQVLQEFQEFCKDTV 505

Query: 183 YVN 185
            V 
Sbjct: 506 LVA 508


>gi|167901171|ref|ZP_02488376.1| error-prone DNA polymerase [Burkholderia pseudomallei NCTC 13177]
          Length = 239

 Score =  119 bits (298), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 68/201 (33%), Gaps = 20/201 (9%)

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            G   +   L+ ++G+G   AR I  A A  PF S+++   R       RR LE+L  A A
Sbjct: 3    GRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRACL---ERRDLEALAAANA 59

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
                  +R   L             +         + A      + +  L   +  +   
Sbjct: 60   FATLAGNRRDALW------------QAVAAAPERGLLAAAPIDEAVRPALGAPTEADDVF 107

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                + R +G   + HP+ + +P L    +           G   R   +V ++Q   T 
Sbjct: 108  ---ADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGLVTARQMPGTA 164

Query: 1011 KGSRIGWVTFSEPAKEYEANF 1031
            KG  + +VT  +         
Sbjct: 165  KG--VLFVTLEDETGCVNVIV 183


>gi|327541636|gb|EGF28163.1| protein containing Polymerase and histidinol phosphatase,
           N-terminal domain [Rhodopirellula baltica WH47]
          Length = 108

 Score =  118 bits (296), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 44/86 (51%)

Query: 2   TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
              + ++  FVHL  HS YSLL+GA  +  ++ +       A+A+TD  NL  ALEF +K
Sbjct: 15  ATEIPETKPFVHLHCHSHYSLLDGAGDIGKLVKRAVDHGMNALALTDHGNLHGALEFYRK 74

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTN 87
           A  AGI PIIG +  I          
Sbjct: 75  AKDAGINPIIGYEAYIAPGSRFDKGG 100


>gi|167947393|ref|ZP_02534467.1| DNA polymerase III subunit alpha [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 92

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 53/79 (67%)

Query: 512 LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
           +++++KLEGL R+A  HA G+VI    L+   P+Y +      VTQF+   +E+AGL+KF
Sbjct: 1   IKMARKLEGLARNAGKHAGGVVIAPGLLTDFAPLYCEEGGGNLVTQFDKNDVEQAGLVKF 60

Query: 572 DFLGLKTLTLLQKSLDFLA 590
           DFLGL+TLT++  +L  + 
Sbjct: 61  DFLGLRTLTIIDWALQTVN 79


>gi|330946296|gb|EGH47446.1| error-prone DNA polymerase [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 126

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +  +  L   S++S   GA S   + ++       A+AITD   L   +   Q + + G+
Sbjct: 2   TSEYAELHCLSNFSFQRGASSARELFERAVRHGYKALAITDECTLAGIVRAWQASKSTGL 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             I+G ++ I+                  P +VLLV    GY+ L  L++      + K 
Sbjct: 62  PLIVGSEMHIENG----------------PKVVLLVENQAGYEALCTLITVARRRAK-KG 104

Query: 128 SVRICLSWLQEIGTEGLIML 147
             R+      E   +GL+ L
Sbjct: 105 EYRVLREDF-EPAPDGLLAL 123


>gi|289610137|emb|CBI60314.1| unnamed protein product [Sordaria macrospora]
          Length = 195

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 72/204 (35%), Gaps = 50/204 (24%)

Query: 363 FIQWAKK--NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +++A    + +    GRGS A S+                          R   PD D+
Sbjct: 40  LVRFATDVRSGLYCAEGRGSAANSI--------------------------RGEPPDIDV 73

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DF  +RR+EVI+Y+  +YG ER     T    + ++A+ +VG+ L +      RL   + 
Sbjct: 74  DFEHERREEVIQYIYARYGRERAGIAATVIHYRPRSAVGEVGKVLGLTRDVTQRLGSTVW 133

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                                              + LE   RH S H  G V+    L 
Sbjct: 134 AVSPADGGAALYQ---------------------CRILE-FPRHLSQHVGGFVLTQGRLD 171

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIE 564
           +LVP++          +++   I+
Sbjct: 172 ELVPIHNGAMEGRTFIEWDKDDID 195


>gi|291536049|emb|CBL09161.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis M50/1]
          Length = 911

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 97/290 (33%), Gaps = 43/290 (14%)

Query: 56  LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
           ++F +     G++ +              M              ++L +   G   L  L
Sbjct: 637 VKFVKMLHDRGMETLDQVNQMGQASPETIMK-------MNTYHAIILATNDIGRINLYRL 689

Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           +S  +L    K+  RI  S   +   EGL++ +   +G + RA      +    RL+ F 
Sbjct: 690 ISLSHLTYYNKR-PRIPKSEFVKY-REGLLLGSACEAGELYRAIVGGRPEEEIIRLVKFY 747

Query: 176 KLFGDRLYVNLQRHRGYD----------------RYRESQVVQLAYTHELPLVATNNSLF 219
                  Y+ +Q     +                +    ++V+L  T    +VAT +  F
Sbjct: 748 D------YLEIQPLGNNEFMLKSDKESVSTIEELQDINRRIVKLGETFGKLVVATCDVHF 801

Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA- 278
           L  ED     ++MA                   YL+   EM+  F  L  A    V I  
Sbjct: 802 LDPEDEIYRRIIMAGKGFKDADD------QAPLYLRTTEEMLKEFEYLGSAKAEEVVITN 855

Query: 279 -RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
             + + + +  AP+ P     +C  + +  +  LR+         + + A
Sbjct: 856 PNKIADMCEKIAPVRP----DKCPPVIENSDQMLRDICYTKAHRYVWRRA 901



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 4   YLEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            ++ SP   V L  H+  S ++G   + +I+ +       AIAITD  ++ +  + +  
Sbjct: 386 RMDTSPEKRVELHCHTKMSDMDGVSEVKDIVKRAMKWGHKAIAITDHGDVQAFPDANHA 444


>gi|167814069|ref|ZP_02445749.1| error-prone DNA polymerase [Burkholderia pseudomallei 91]
          Length = 217

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 58/181 (32%), Gaps = 20/181 (11%)

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
            R I  A A  PF S+++   R       RR LE+L  A A      +R   L        
Sbjct: 1    RRIGAARAAGPFASVDELARRACL---ERRDLEALAAANAFATLAGNRRDALW------- 50

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
                 +         + A      + +  L   +  +       + R +G   + HP+ +
Sbjct: 51   -----QAVAAAPERGLLAAAPIDEAVRPALGAPTEADDVF---ADYRTIGLTLNRHPVAL 102

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +P L    +           G   R   +V ++Q   T KG  + +VT  +        
Sbjct: 103  LRPALDARRLSSAAALRDRRNGRLARACGLVTARQMPGTAKG--VLFVTLEDETGCVNVI 160

Query: 1031 F 1031
             
Sbjct: 161  V 161


>gi|330004311|ref|ZP_08304869.1| uracil-DNA glycosylase, family 4 [Klebsiella sp. MS 92-3]
 gi|328536683|gb|EGF63005.1| uracil-DNA glycosylase, family 4 [Klebsiella sp. MS 92-3]
          Length = 386

 Score =  116 bits (290), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 98/226 (43%), Gaps = 16/226 (7%)

Query: 737 SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
            K G+S++ A  +++   KF  YGFNKSHA AY  ISYQ  ++KTH+P  F AA++T++ 
Sbjct: 9   EKPGLSESKAKEVWDAFEKFGSYGFNKSHAVAYTAISYQAMYLKTHHPAAFFAAALTIQD 68

Query: 797 DNVEKIKKFCQDARQFNIQIMPPSVNTPC-----VDFKVGDNRIYYSLAAIKGVGTTTAR 851
           D  EK +   +DA    + +MPP +N        V+ K G   +Y   +A+KG     + 
Sbjct: 69  D--EKHRAVVKDALARGVIVMPPDINLSTDRIEIVELKDGRAALYAPFSAVKGCSEKGSL 126

Query: 852 HIMEASA--DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            IM A       F+S   F   ++++  N RV E+L   GA               +   
Sbjct: 127 AIMRARERVGGKFESRAQFKEAIEARLCNIRVQEALDAVGAFASIEP-------GSEPAM 179

Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             ++   ++       I A +     +     +  V         E
Sbjct: 180 AESRRKAQSELMGSLIIDAVKVSRPFEMNPKRQAEVSMLMEELRKE 225


>gi|298251234|ref|ZP_06975037.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297545826|gb|EFH79694.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 94

 Score =  116 bits (290), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           +SP F HL VH+ YSLL+G   +  ++ +        +AITD   ++ AL+F +   A 
Sbjct: 4  TRSPDFAHLHVHTEYSLLDGFSRIKTLVKQTKELGMKHLAITDHGAMYGALKFYKACKAN 63

Query: 66 GIQP 69
           I+P
Sbjct: 64 DIRP 67


>gi|291538542|emb|CBL11653.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis XB6B4]
          Length = 905

 Score =  115 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 97/290 (33%), Gaps = 43/290 (14%)

Query: 56  LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
           ++F +     G++ +              M              ++L +   G   L  L
Sbjct: 631 VKFVKMLHDRGMETLDQVNQMGQASPETIMK-------MNTYHAIILATNDIGRINLYRL 683

Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           +S  +L    K+  RI  S   +   EGL++ +   +G + RA      +    RL+ F 
Sbjct: 684 ISLSHLTYYNKR-PRIPKSEFVKY-REGLLLGSACEAGELYRAIVGGRPEEEIIRLVKFY 741

Query: 176 KLFGDRLYVNLQRHRGYD----------------RYRESQVVQLAYTHELPLVATNNSLF 219
                  Y+ +Q     +                +    ++V+L  T    +VAT +  F
Sbjct: 742 D------YLEIQPLGNNEFMLKSDKESVSTIEELQDINRRIVKLGETFGKLVVATCDVHF 795

Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA- 278
           L  ED     ++MA                   YL+   EM+  F  L  A    V I  
Sbjct: 796 LDPEDEIYRRIIMAGKGFKDADD------QAPLYLRTTEEMLKEFEYLGSAKAEEVVITN 849

Query: 279 -RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
             + + + +  AP+ P     +C  + +  +  LR+         + + A
Sbjct: 850 PNKIADMCEKIAPVRP----DKCPPVIENSDQMLRDICYTKAHRYVWRRA 895



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 4   YLEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            ++ SP   V L  H+  S ++G   + +I+ +       AIAITD  ++ +  + +  
Sbjct: 380 RMDTSPEKRVELHCHTKMSDMDGVSEVKDIVKRAMKWGHKAIAITDHGDVQAFPDANHA 438


>gi|157964617|ref|YP_001499441.1| DNA polymerase III alpha chain [Rickettsia massiliae MTU5]
 gi|157844393|gb|ABV84894.1| DNA polymerase III alpha chain [Rickettsia massiliae MTU5]
          Length = 2794

 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 66/279 (23%), Positives = 110/279 (39%), Gaps = 26/279 (9%)

Query: 521 LYRHASTHAAGIVIG-DRPLSQLVPMYRDVRSDLPV-----TQFNMKWIEKAGLIKFDFL 574
           L  HA    AG ++  +  L Q     + V S+L +     T +N    +  G IKFD L
Sbjct: 621 LITHAYQGRAGWMMKKNNSLHQSAIGIKPVNSNLAIKNGNFTDYNK-CTDIKGFIKFDLL 679

Query: 575 GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
             K L    +                   +D +TY L+       +FQ+    M +  + 
Sbjct: 680 SSKELYKFNQVCK-----QQTDVTKRDSLNDAKTYQLIANGDVQNLFQISK--MGKVCKE 732

Query: 635 MQPDCIEDIIALVSLYR--PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           + P C  D++ L+++ R  P   +  +     K     I  +      +   T+GVI+++
Sbjct: 733 LHPTCFNDLVNLLAVNRSIPQIRNTNINILAGKQLSSLIDPLS-----VFSSTKGVILFK 787

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQ+MQ A    G ++       + +  K        K+       K  I    A  +F  
Sbjct: 788 EQIMQAANRYFGVNVKNTYQFLKDLKDKKIG-----KDEKKQYIKKANIFTDQADQLFTE 842

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
           L K +   F+K+HA + A I Y +A++K HYP  F    
Sbjct: 843 LQKASSSVFSKAHAISCAKIIYNSAYVKAHYPELFKQVY 881



 Score = 91.2 bits (225), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
           ++Y++RL  ELN+I +  ++  FLI A+ ++  +  +I      GS   S+ A AL I  
Sbjct: 525 EEYQKRLTEELNIIKQFDYAENFLIAANIVKICQYFDIRYQL-IGSANSSLVAKALNIHT 583

Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           I+P+   LLFE FL+ DR   PDFD     ++R  +  Y+       R   ++   +   
Sbjct: 584 INPIEHQLLFEVFLSDDR--QPDFDFYIDSEQRHIICNYLITHAYQGRAGWMMKKNNSLH 641

Query: 455 KAALR 459
           ++A+ 
Sbjct: 642 QSAIG 646


>gi|239502679|ref|ZP_04661989.1| putative DNA polymerase III alpha chain [Acinetobacter baumannii
           AB900]
          Length = 421

 Score =  114 bits (286), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 99/222 (44%), Gaps = 44/222 (19%)

Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
           +G+ +++A  I+E     A+Y FNKSH+  Y++IS   A+++ HYP E+ AAS+++  D 
Sbjct: 11  DGLEESVAERIWEQTEANANYQFNKSHSVEYSIISMWCAYIRVHYPAEYFAASLSVV-DT 69

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY-SLAAIKGVGTTTARHIMEAS 857
            +K+    +DAR+  I+I+PP +N     +K+  N        A+KG+  T A+ I++  
Sbjct: 70  EDKLTGLVKDARECGIEILPPDINYSADRYKIKSNTEILAPFNAVKGISETIAKAIVKLR 129

Query: 858 AD----------------------KP---------FDSLEDFCSRV--DSKKLNRRVLES 884
                                    P         FDS ++F       + K+N+ ++E+
Sbjct: 130 EKNRAWKVVRYKKSRKTGETTPVYGPDGSVPPKKRFDSFDEFEKAASQPNSKVNKTIVEN 189

Query: 885 LVFAGALDCFGYS---------RMQLLQSLDNIQKYAQWVEK 917
           L   GA      S         R   ++ L  +   +   ++
Sbjct: 190 LRAIGAFASIEPSEPSAKDLSRRKDQMRLLPGLIIDSVKADR 231


>gi|34762809|ref|ZP_00143795.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887511|gb|EAA24595.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 214

 Score =  114 bits (285), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 82/220 (37%), Gaps = 44/220 (20%)

Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + +R+   KK  E  +K             + +    + +    +  +Y F K HA AY
Sbjct: 1   MEFVRKGKPKKEPENWEKYSAM---------MKEKNVPDWYIESCRRIEYMFPKGHAVAY 51

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------KIKKF------------ 805
            +++ + A+ K H P+ F AA ++ + D+ +            K+++             
Sbjct: 52  VMMAMRIAYFKVHQPLAFYAAFLSRKADDFDMEVMSRGILAKQKLEELSKKPKLDPKKKN 111

Query: 806 -------CQDARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                    +     ++++P  +       F +  N+I   L  I G+G      I++  
Sbjct: 112 EQAICEIVVEMEARGLELLPVDIYLSDGKKFTIEYNKIRIPLIGINGLGGAVIDAIVKER 171

Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            +  F S+ED   R   ++     L+++   GA+     +
Sbjct: 172 EEGKFISVEDLKRRTKIQQPVVDKLKNI---GAISSLSET 208


>gi|328462506|gb|EGF34511.1| DNA polymerase III subunit alpha [Lactobacillus rhamnosus MTCC
           5462]
          Length = 122

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/129 (36%), Positives = 64/129 (49%), Gaps = 9/129 (6%)

Query: 265 SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
           + L  A+  T  IA R    +    P LP +        Q   ++ L   A +GL  R  
Sbjct: 3   AGLQAAVTQTEAIAARADVTIDFKQPQLPHYQTPN----QTPSKDYLTKLAESGLAKRFH 58

Query: 325 QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
             +I        Y++RL +EL VI  M F+ YFL+V D + +A K NI  G GRGS AGS
Sbjct: 59  GQSI-----PPAYQERLQYELRVIIEMGFADYFLVVWDVMNYAHKVNIMTGAGRGSAAGS 113

Query: 385 VTAYALTIT 393
           + +YAL IT
Sbjct: 114 LVSYALAIT 122


>gi|167617802|ref|ZP_02386433.1| error-prone DNA polymerase [Burkholderia thailandensis Bt4]
          Length = 217

 Score =  112 bits (280), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 57/181 (31%), Gaps = 20/181 (11%)

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
            R I  A A  PF S++         +L RR LE+L  A A      +R   L        
Sbjct: 1    RRIEAARAAGPFASVD---ELARRARLERRDLEALAAANAFATLAGNRRDALWQAVAAV- 56

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
                          ++ A      + K  L   +  +       +   +G   + HP+ +
Sbjct: 57   -----------PQRDLLAGAPIDEAVKPALGAPTEADDVF---ADYHTIGLTLNRHPVAL 102

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +P L    +           G   R   +V ++Q   T KG  + +VT  +        
Sbjct: 103  LRPALDARRLSSAAALRDRRNGQLARACGLVTARQMPGTAKG--VLFVTLEDETGCVNVI 160

Query: 1031 F 1031
             
Sbjct: 161  V 161


>gi|330893149|gb|EGH25810.1| type II secretion system, protein F domain [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 179

 Score =  111 bits (279), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
           LP+A  +  E+  R  F L      +         ++ +     +R++  AG ++R   G
Sbjct: 20  LPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTG 79

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                             L ++  +  +GYFL V D +++A+  +I +  GRGS A S  
Sbjct: 80  ETRMTALV----------LALL-PVGMAGYFLTVHDIVEFARSQHI-LCQGRGSAANSAV 127

Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            YAL IT+++P + +LLFERF++ +R   PD D+DF  DRR+EVI+Y+  +Y
Sbjct: 128 CYALGITELNPEKSNLLFERFISKERNEPPDIDVDFEHDRREEVIQYIFRRY 179


>gi|221316478|ref|ZP_03598283.1| hypothetical protein BsubsN3_22464 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
          Length = 329

 Score =  110 bits (276), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/330 (13%), Positives = 119/330 (36%), Gaps = 25/330 (7%)

Query: 3   QYLEKSPSFVHLQV-HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           +  +K P   H     S++ L +       ++D         + ITD   L S ++  + 
Sbjct: 3   ENYKKKPFLTHSHTDASNFRLRDAINKPEELIDYCHEIGLSGVVITDHETLSSHVKAHKY 62

Query: 62  ACAAGIQ----PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
                 +     +        +     M  +      +    +L+  + +GY+ L +L S
Sbjct: 63  VEENKERLGDFKLGFGNEIYLVDKEDTMEKKSLNQKISFHHFILIAKSQKGYEGLKKLSS 122

Query: 118 RMYLLDQGKQSVRICLSW------LQEIGTEGLIMLTGGSSGPIDRAFFF-------NSS 164
           + +      + +    ++      L +     +I  T    G + ++           + 
Sbjct: 123 KAWYNSFFYRGMERVPTYKDELMSLMQEYQGEIIACTACVGGELPQSLISYHDKPTPENK 182

Query: 165 QVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEE 223
           +     ++  K +FG+ LY  LQ  +  D+      +++++  + +  + + ++ +L+++
Sbjct: 183 KRVHDFIVWLKGVFGEDLYFELQPSKNRDQLVANEMMLKVSEAYNVKCIVSTDAHYLNKK 242

Query: 224 DYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRC 281
              AH + +  +      +++        Y+    E++  F +  L   ++NT EI  + 
Sbjct: 243 YAPAHKIYLTASEG----EREVDEFYATTYVMGYEELLEYFDEELLDVLVDNTNEIRSKL 298

Query: 282 SFILQVHAPILPRFIEKECDDIQKEEENEL 311
             I       +P+    + +  Q    + +
Sbjct: 299 GTITFAQETKVPKAHIPKYEMSQLFVPHYM 328


>gi|312888221|ref|ZP_07747798.1| nucleic acid binding OB-fold tRNA/helicase-type [Mucilaginibacter
            paludis DSM 18603]
 gi|311299252|gb|EFQ76344.1| nucleic acid binding OB-fold tRNA/helicase-type [Mucilaginibacter
            paludis DSM 18603]
          Length = 253

 Score =  110 bits (276), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 59/178 (33%), Gaps = 23/178 (12%)

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
              D  +  +    +++ S  +    LE L  A A    G  R   L           W  
Sbjct: 7    RKDG-YTHI----NQLRSAGVPEAALEKLADADAFRSMGTDRRMAL-----------WEI 50

Query: 917  KNRTNKHENIFAHE--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
                ++   +F  +  +    D + L   +     V    +    G     HP+ + +  
Sbjct: 51   SALADRPVGLFDGQVSETVLEDAVPLPLMTRGEHVV---QDYISTGLSLKDHPVGLVRTQ 107

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            L ++      +      G++I LA ++  +Q+  T KG  + ++T  +         +
Sbjct: 108  LNRLYNVRISDLAKYKDGDSICLAGLITVRQRPGTAKG--VLFMTLEDETGSANVVVW 163


>gi|213580324|ref|ZP_03362150.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-0664]
          Length = 89

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 43/74 (58%)

Query: 7  KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2  SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67 IQPIIGCQLDIDMQ 80
          I+PI+G   ++  +
Sbjct: 62 IKPIVGADFNVHNE 75


>gi|330950664|gb|EGH50924.1| DNA polymerase III subunit alpha [Pseudomonas syringae Cit 7]
          Length = 230

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R   E+  LG Y +GHP+D Y+  +R+   +   +           +A ++++ +  K
Sbjct: 21   KDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQ--TVAGLIIALRVMK 78

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
             +KG ++G++T  + +   EA+ F
Sbjct: 79   NKKGDKMGFITLDDRSARIEASLF 102


>gi|290794221|gb|ADD64432.1| DNA polymerase III [Streptococcus salivarius]
          Length = 165

 Score =  108 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 17/177 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
             A   + P+V  +   +    D     +L A++ +  +S+     +     L +  EM 
Sbjct: 6   DAAKEFDYPVVPLHTVCYFENADRSTIQMLHAISQNVSLSEASICPMN--QLLFSPQEME 63

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
           S +SD+PEAL N  ++    ++        LPRF      +      ++LR  A +GLE 
Sbjct: 64  SAYSDIPEALNNLEQLVSDITYQFDTDL-KLPRF------NRDMPAVDQLRQLAQSGLE- 115

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
                  +K   +  Y++RLD EL++I +M F  YFLIV D +++ +     +G GR
Sbjct: 116 -------SKKLTSAVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGYYMGMGR 165


>gi|262067830|ref|ZP_06027442.1| putative DNA polymerase III PolC-type [Fusobacterium periodonticum
           ATCC 33693]
 gi|291378554|gb|EFE86072.1| putative DNA polymerase III PolC-type [Fusobacterium periodonticum
           ATCC 33693]
          Length = 868

 Score =  108 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 59/494 (11%), Positives = 158/494 (31%), Gaps = 100/494 (20%)

Query: 81  DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----------GKQSVR 130
           D   +    KTP   +      +   +G   L +++++ Y                +   
Sbjct: 366 DRDHLILLLKTPDEEIDYHGEKLKINKGLVELYKIITKSYTDYFSTPTEADKKMYGKRPV 425

Query: 131 ICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQ 187
           I   +L +    +  I+ +  + G   +       +   + +      ++      + + 
Sbjct: 426 IPYEYLFQPEIRKHFIITSACAFGKHMKLITEGKEKEFREWIKNLDAVEIHPSWNNIFMV 485

Query: 188 RHRGYDRYR--------ESQVVQLAYTHELPLVATNNSLFLSEEDYEA---------HDV 230
            H+ ++  +          ++ ++     +P +  +++   S+ED            H +
Sbjct: 486 EHKDFENIKTEEDVYALHRKIYKICKEENVPCIIVSDAHITSKEDRVLRSNFKNGYIHLI 545

Query: 231 LMAVAHS--TVVSQKDRPRVTPDHYLKNRSEMVSIF-------SDLPEALENTVEIARRC 281
           L   +       S  +   +    Y+ +  +++  +        ++ E   NT ++A +C
Sbjct: 546 LNNFSKGDEQRTSTDEDFNIETQPYVMSYDDVIRDYTKQGFTLEEIEEMHNNTNKLAEQC 605

Query: 282 SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
                +   +  +    E  ++    + E+          + ++    K    +  ++R+
Sbjct: 606 INGFDI-TILPNKLFLPEFPNM--NSKEEMPKMVWEEAIKKYSKDG-TKETIDKKIKERI 661

Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
           ++EL +     F   +++     + +++    VG  RGS    + +  L I++++PL   
Sbjct: 662 EYELELTRESGFETLYMLAYKSCRDSEELGYIVG-SRGSVGSMIISNLLKISEVNPLDSH 720

Query: 402 LLFERFLNPD-------------------------------------------------R 412
              E   N +                                                 +
Sbjct: 721 YYCEHCHNIEWYEEEGKTGLDLPDKTCSVCGNIMKGDGVSIESHNFVGWIEKDENGKIMK 780

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL------- 465
             +PD D++F ++ +  V + V + +G E   +  T    Q  A   D+ R +       
Sbjct: 781 TKIPDIDLNFSENVQSSVQQRVIDLFGKENAIKSGTQQVYQEDALKNDIFRNIPNIQEKV 840

Query: 466 QMPYSQVDRLCKLI 479
           +     +D   K I
Sbjct: 841 KNEEFDIDFFAKNI 854



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             L  H+ YS  +   S  + L    +++  A+AITD  ++F  + F  +    
Sbjct: 180 AELHCHTMYSKNDALSSPEDYLKAFNSNKCHAMAITDHGSVFGFIPFVNQLKGK 233


>gi|213029070|ref|ZP_03343517.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
          Length = 73

 Score =  108 bits (270), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%)

Query: 7  KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2  SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67 IQPIIGCQLDID 78
          I+PI+G   ++ 
Sbjct: 62 IKPIVGADFNVH 73


>gi|167892675|ref|ZP_02480077.1| error-prone DNA polymerase [Burkholderia pseudomallei 7894]
          Length = 208

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 54/172 (31%), Gaps = 20/172 (11%)

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             PF S+++   R       RR LE+L  A A      +R   L             +   
Sbjct: 1    GPFASVDELARRACL---ERRDLEALAAANAFATLAGNRRDALW------------QAVA 45

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                  + A      + +  L   +  +       + R +G   + HP+ + +P L    
Sbjct: 46   AAPERGLLAAAPIDEAVRPALGAPTEADDVF---ADYRTIGLTLNRHPVALLRPALDARR 102

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +           G   R   +V ++Q   T KG  + +VT  +         
Sbjct: 103  LSSAAALRDRRNGRLARACGLVTARQMPGTAKG--VLFVTLEDETGCVNVIV 152


>gi|213417925|ref|ZP_03351016.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 102

 Score =  106 bits (266), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 1/102 (0%)

Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A    K       ++F
Sbjct: 1   MCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF 60

Query: 928 A-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
               +     + +          V  + E+  LG Y +GHP+
Sbjct: 61  GVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPI 102


>gi|170703141|ref|ZP_02893955.1| DNA-directed DNA polymerase [Burkholderia ambifaria IOP40-10]
 gi|170131945|gb|EDT00459.1| DNA-directed DNA polymerase [Burkholderia ambifaria IOP40-10]
          Length = 169

 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 5/116 (4%)

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            +        ++ A       DK  L   S  +  +    +    G   + HP+ + +P L
Sbjct: 3    QAVAAAPERDLLAAAPIDEPDKPALGAPSEADDIL---ADYDTTGLTLNRHPVALLRPAL 59

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            R   +    E      G   R   +V ++Q   T KG  + ++T  +         
Sbjct: 60   RAQRLSSAAELRDRPDGRLARACGIVTARQMPGTAKG--VMFMTLEDETGCVNVIV 113


>gi|319645714|ref|ZP_07999945.1| hypothetical protein HMPREF1012_00979 [Bacillus sp. BT1B_CT2]
 gi|317392261|gb|EFV73057.1| hypothetical protein HMPREF1012_00979 [Bacillus sp. BT1B_CT2]
          Length = 252

 Score =  105 bits (262), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 97/234 (41%), Gaps = 28/234 (11%)

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKV-------- 596
                +   +TQFNM   E  G +KFD L ++ L  ++ +LD  +    ++         
Sbjct: 1   MMKTPNGAYITQFNMGDSEAMGSVKFDLLTIEALDKIRVTLDQLIENEEIQWQGSLKETY 60

Query: 597 ----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR- 651
                  ++ ++D   + +      + +FQ  +    QA+  +QP  + +     SL R 
Sbjct: 61  NKYIHPDVLEYEDARLWEMAGNGEIMDLFQFSTEVGHQAVIKVQPKNLLEAAVTNSLMRL 120

Query: 652 --PGPIDNIVVYNNRKNG-----KEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIA 699
              G    +  Y   KN      +E            +++  LK+  GV   QE VMQ+ 
Sbjct: 121 MSDGEEQPVDTYVKYKNNLSLWYEEMRKYGLSDDAIKVVEKHLKDIYGVADTQEVVMQMV 180

Query: 700 QL--LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
               ++G+ + E++ LR+++ KK ++ + + ++ F     + G S  +   ++ 
Sbjct: 181 MDKEIAGFDIKESNYLRKSIAKKKEDVLKEVQKLFFKKGKEIGASDNLLNYVWN 234


>gi|218673758|ref|ZP_03523427.1| DNA polymerase III protein, alpha subunit [Rhizobium etli GR56]
          Length = 150

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 68/178 (38%), Gaps = 32/178 (17%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  LQV + +S L GA S + +          A+ + D N+L   +   + + A G++ +
Sbjct: 3   YAELQVTTHFSFLRGASSADELFATAKELGIEAVGVVDRNSLAGIVRALEASRATGVRLV 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +GC                +       SI++  +    Y RL  L++    L +G+    
Sbjct: 63  VGC----------------RLDLQDGMSILVYPTNRAAYSRLTRLLT----LGKGRGGKD 102

Query: 131 ICLSWLQE--IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             +  L +  +  EGL+ +                      +L    ++FG+R YV+L
Sbjct: 103 NSILHLDDVALYAEGLLGILVPDLPD----------DTCGVQLRKMSEIFGNRAYVSL 150


>gi|330883651|gb|EGH17800.1| error-prone DNA polymerase [Pseudomonas syringae pv. glycinea str.
            race 4]
          Length = 141

 Score =  105 bits (261), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 7/132 (5%)

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             L+ L   +  A+W E         +F ++  +   ++TL   +V   +     +   LG
Sbjct: 5    ALRGLIGHRHRARW-EVAGVEAQRPLF-NDLPSEDTQVTLPLPTV---AEDLMADYATLG 59

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                 HPL + +  L     +  ++ ++      + +A +V+ +Q+  T  G  + +VT 
Sbjct: 60   TTLGPHPLALLRRQLAAKRFRSSQDLLSLENDRTLSVAGLVIGRQRPGTASG--VTFVTL 117

Query: 1021 SEPAKEYEANFF 1032
             +         +
Sbjct: 118  EDEFGMVNVVVW 129


>gi|92111602|gb|ABE73545.1| DNA polymerase III [Streptococcus salivarius]
 gi|92111604|gb|ABE73546.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score =  104 bits (259), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 17/171 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
                 + P+V  +   +    D     +L A++ +  +S+     +     L +  EM 
Sbjct: 7   DAGKEFDYPVVPLHTVRYFENSDRSTIQMLHAISQNVSLSEASICPMN--QLLFSPQEME 64

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
           S +SD+PEAL N  ++    ++        LPRF      +      ++LR  A +GLE 
Sbjct: 65  SAYSDIPEALNNLEQLVSDITYQFDTDL-KLPRF------NRDMPAVDQLRQLAQSGLE- 116

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                  +K   +  Y++RLD EL++I +M F  YFLIV D +++ +    
Sbjct: 117 -------SKKLTSPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGY 160


>gi|92111608|gb|ABE73548.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 17/171 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
                 + P+V  +   +    D     +L A++ +  +S+     +     L +  EM 
Sbjct: 7   DAGKEFDYPVVPLHTVRYFENADRSTIQMLHAISQNVSLSEASICPMN--QLLFSPQEME 64

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
           S +SD+PEAL N  ++    ++        LPRF      +      ++LR  A +GLE 
Sbjct: 65  SAYSDIPEALNNLEQLVSDITYQFDTDL-KLPRF------NRDMPAVDQLRQLAQSGLE- 116

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                  +K   +  Y++RLD EL++I +M F  YFLIV D +++ +    
Sbjct: 117 -------SKKLTSPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGY 160


>gi|270719404|ref|ZP_06223309.1| DNA polymerase III, alpha subunit [Haemophilus influenzae HK1212]
 gi|270315437|gb|EFA27694.1| DNA polymerase III, alpha subunit [Haemophilus influenzae HK1212]
          Length = 116

 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 12/128 (9%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++  + +  ++   AA++  A+ +TD  N    + F  +  ++G++PIIG         
Sbjct: 1   MIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLSSGMKPIIGA-------- 52

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
              +  +          + LL    EGY+ +  L+S+ Y          I   WL E   
Sbjct: 53  --DVKVKSALCGDEYFDLTLLAKNNEGYKNITLLLSKAYQRGYN-DLPYIDQDWLIE-HR 108

Query: 142 EGLIMLTG 149
           EG+I+L+G
Sbjct: 109 EGVIILSG 116


>gi|218671864|ref|ZP_03521533.1| DNA polymerase III protein, alpha subunit [Rhizobium etli GR56]
          Length = 243

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 47/138 (34%), Gaps = 9/138 (6%)

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              SR + L ++  +       +     +   +F   +                   +   
Sbjct: 6    SLSRREALWAVRAL-------DVKSAAEELPLFEQVRHVDLQPEPAAVLPDMLPGEQVIE 58

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            + R L      HP+   +   RK+GI    + +    G  + +A +V+ +Q+  + KG  
Sbjct: 59   DYRYLSLSLKAHPVSFLREEFRKIGITRNVDLLRVPNGKRVTIAGLVLVRQRPGSAKG-- 116

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + ++T  +      A  +
Sbjct: 117  VIFMTLEDETGVANAIVW 134


>gi|92111572|gb|ABE73530.1| DNA polymerase III [Streptococcus vestibularis]
          Length = 160

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 17/171 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
                 + P+V  +   +    D      L A++ +  +S+     +     L +  EM 
Sbjct: 7   DAGKEFDYPVVPLHTVHYFENADRSTIQTLHAISQNVSLSEASICPMN--QLLFSPQEME 64

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
           S +SD+PEAL N  ++    ++    +   LPRF      + +    ++LR  A +GL+ 
Sbjct: 65  SAYSDIPEALNNLEQLVSDITYQFDTNL-KLPRF------NREMPAVDQLRQLAQSGLD- 116

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                  +K      Y++RLD EL++I +M F  YFLIV D +++ +    
Sbjct: 117 -------SKALREPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGY 160


>gi|92111612|gb|ABE73550.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 17/171 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +    + P+V  +   +    D     +L A++ +  +S+     +     L +  EM 
Sbjct: 7   DVGKEFDYPVVPLHTVRYFENADRSTIQMLHAISQNVSLSEASICPMN--QLLFSPQEME 64

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
           S +SD+PEAL N  ++    ++        LPRF      +      ++LR  A +GLE 
Sbjct: 65  SAYSDIPEALNNLEQLVSDITYQFDTDL-KLPRF------NRDMPAVDQLRQLAQSGLE- 116

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                  +K   +  Y++RLD EL++I +M F  YFLIV D +++ +    
Sbjct: 117 -------SKKLTSAVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGY 160


>gi|167568661|ref|ZP_02361535.1| error-prone DNA polymerase [Burkholderia oklahomensis C6786]
          Length = 201

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 6/125 (4%)

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
              ++ A W       +  ++ A      + K  L   S  +  +    +   +G   + H
Sbjct: 27   GHRRDALWQAVAAVPE-RDLLAAAPIDEAVKPELGAPSEADDVL---ADYHTIGLTLNRH 82

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P+ + +P L    +           G   R   +V ++Q   T KG  + +VT  +    
Sbjct: 83   PVALLRPELDARRLSSAAALRDRRNGRLARACGLVTARQMPGTAKG--VLFVTLEDETGC 140

Query: 1027 YEANF 1031
                 
Sbjct: 141  VNVIV 145


>gi|237732880|ref|ZP_04563361.1| DNA polymerase III subunit alpha [Mollicutes bacterium D7]
 gi|229384033|gb|EEO34124.1| DNA polymerase III subunit alpha [Coprobacillus sp. D7]
          Length = 101

 Score =  102 bits (255), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 13/113 (11%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL + + YS+L     ++ +++K   +   A+AITD NN+     F +K   AG++PI
Sbjct: 2   FTHLNIKTEYSMLNSIAKIDGLIEKAKRNNMKALAITDINNMHIVYNFEEKCKKAGLKPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
           +G  L +   +N K+             + LL    +GY+++ ++V+   + +
Sbjct: 62  LGVTLVVKYDNNYKL-------------LGLLAKNEQGYKKITKIVTETNVGE 101


>gi|92111614|gb|ABE73551.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score =  102 bits (255), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 17/171 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
                 + P+V  +   +    D     +L A++ +  +S+     +     L +  EM 
Sbjct: 7   DAGKEFDYPVVPLHTVRYFENADRSTIQMLHAISQNVSLSEASICPMN--QLLFSPQEME 64

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
           S +SD+PEAL N  ++    ++        LPRF      +      ++LR  A +GLE 
Sbjct: 65  SAYSDIPEALNNLEQLVSDITYQFDTDL-KLPRF------NRDMPAVDQLRQLAQSGLE- 116

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                  +K   +  Y++RLD EL++I +M F  YFLIV D +++ +    
Sbjct: 117 -------SKKLTSAVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGY 160


>gi|167736964|ref|ZP_02409738.1| error-prone DNA polymerase [Burkholderia pseudomallei 14]
          Length = 186

 Score =  102 bits (254), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 6/123 (4%)

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
            ++ A W       +   + A       D+           +     + R +G   + HP+
Sbjct: 14   RRDALWQAVAAAPERGLLAAAP----IDEAVRPALGAPTEADDVFADYRTIGLTLNRHPV 69

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             + +P L    +           G   R   +V ++Q   T KG  + +VT  +      
Sbjct: 70   ALLRPALDARRLSSAAALRDRRNGRLARACGLVTARQMPGTAKG--VLFVTLEDETGCVN 127

Query: 1029 ANF 1031
               
Sbjct: 128  VIV 130


>gi|92111582|gb|ABE73535.1| DNA polymerase III [Streptococcus salivarius]
 gi|92111584|gb|ABE73536.1| DNA polymerase III [Streptococcus salivarius]
 gi|92111592|gb|ABE73540.1| DNA polymerase III [Streptococcus salivarius]
 gi|92111594|gb|ABE73541.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score =  101 bits (253), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 17/171 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
                 + P++  +   +    D     +L A++ +  +S+     +     L +  EM 
Sbjct: 7   DAGKEFDYPVIPLHTVRYFENVDRSTIQMLHAISQNVSLSEASICPMN--QLLFSPQEME 64

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
           S +SD+PEAL N  ++    ++        LPRF      +      ++LR  A +GLE 
Sbjct: 65  SAYSDIPEALNNLEQLVSDITYQFDTDL-KLPRF------NRDMPAVDQLRQLAQSGLE- 116

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                   K   A  Y++RLD EL++I +M F  YFLIV D +++ +    
Sbjct: 117 -------TKKLSAAVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGY 160


>gi|92111586|gb|ABE73537.1| DNA polymerase III [Streptococcus salivarius]
 gi|92111588|gb|ABE73538.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score =  101 bits (252), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 17/171 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
                 + P++  +   +    D     +L A++ +  +S+     +     L +  EM 
Sbjct: 7   DAGKEFDYPVIPLHTVRYFENVDRSTIQMLHAISQNVSLSEASICPMN--QLLFSPQEME 64

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
           S +SD+PEAL N  ++    ++        LPRF      +      ++LR  A +GLE 
Sbjct: 65  SAYSDIPEALNNLEQLVSDITYQFDTDL-KLPRF------NRDMPAVDQLRQLAQSGLE- 116

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                   K   A  Y++RLD EL++I +M F  YFLIV D +++ +    
Sbjct: 117 -------TKKLSAAVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGY 160


>gi|288919035|ref|ZP_06413376.1| PHP domain protein [Frankia sp. EUN1f]
 gi|288349575|gb|EFC83811.1| PHP domain protein [Frankia sp. EUN1f]
          Length = 132

 Score =  101 bits (252), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 7/113 (6%)

Query: 1   LTQYLEKSP-----SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
           L + L   P      +  L  HS++S L+GA    +++ +       A+A+TD N ++  
Sbjct: 5   LVEKLAAKPQVPVVRYAELHCHSAFSFLDGASQPEDLVAEAVRLGLSALALTDHNGMYGT 64

Query: 56  LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           + F++ A AAG+  + G   ++        T +     PT  S         G
Sbjct: 65  VRFAEAAAAAGLPTVFG--TEVSFGSPAPATGRRIPTRPTSSSSPGTPRGTAG 115


>gi|92111596|gb|ABE73542.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 17/171 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
                 + P++      +    D     +L A++ +  +S+     +     L +  EM 
Sbjct: 7   DAGKEFDYPVIPLRTVRYFENADRSTIQMLHAISQNVSLSEASICPMN--QLLFSPQEME 64

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
           S +SD+PEAL N  ++    ++        LPRF      +      ++LR  A +GLE 
Sbjct: 65  SAYSDIPEALNNLEQLVSDITYQFDTDL-KLPRF------NRDMPAVDQLRQLAQSGLET 117

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
           +   GA+        Y++RLD EL++I +M F  YFLIV D +++ +    
Sbjct: 118 KKLSGAV--------YQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGY 160


>gi|92111618|gb|ABE73553.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score =  101 bits (251), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 17/171 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
                 + P+V  +   +    D     +L A+  +  +S+     +     L +  EM 
Sbjct: 7   DAGKEFDYPVVPLHTVRYFENADRSTIQMLHAILQNVSLSEASICPMN--QLLFSPQEME 64

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
           S +SD+PEAL N  ++    ++        LPRF      +      ++LR  A +GLE 
Sbjct: 65  SAYSDIPEALNNLEQLVSDITYQFDTDL-KLPRF------NRDMPAVDQLRQLAQSGLE- 116

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                  +K   +  Y++RLD EL++I +M F  YFLIV D +++ +    
Sbjct: 117 -------SKKLTSAVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGY 160


>gi|92111574|gb|ABE73531.1| DNA polymerase III [Streptococcus vestibularis]
          Length = 160

 Score =  101 bits (251), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 17/171 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
                 + P+V  +   +    D      L A++ +  +S+     +     L +  EM 
Sbjct: 7   DAGKEFDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEASICPMN--QLLFSPQEME 64

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
           S +SD+PEAL N  ++    ++        LPRF      +      ++LR  A +GL+ 
Sbjct: 65  SAYSDIPEALNNLEQLVSDITYQFDTDL-KLPRF------NRDMPAVDQLRQLAQSGLD- 116

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                  +K      Y++RLD EL++I +M F  YFLIV D +++ +    
Sbjct: 117 -------SKALREPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGY 160


>gi|92111578|gb|ABE73533.1| DNA polymerase III [Streptococcus vestibularis]
          Length = 160

 Score =  101 bits (251), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 17/171 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
                 + P+V  +   +    D      L A++ +  +S+     +     L +  EM 
Sbjct: 7   DAGKEFDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEVSICPMN--QLLFSPQEME 64

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
           S +SD+PEAL N  ++    S+    +   LPRF      +      ++LR  A +GL+ 
Sbjct: 65  SAYSDIPEALNNLEQLVSDVSYQFDTNL-KLPRF------NRDMPAVDQLRQLAQSGLD- 116

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                  +K      Y++RLD EL++I +M F  YFLIV D +++ +    
Sbjct: 117 -------SKALREPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGY 160


>gi|160689454|gb|ABX45585.1| polymerase C [Bacillus pumilus]
          Length = 259

 Score =  100 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 9/178 (5%)

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++      +    Q N  M              +L+     G + L +LVS  ++     
Sbjct: 73  LKDAAEKDIAYHDQLNENMGQSNAYQRSRPYHAILIAQNETGLKNLFKLVSLSHIH-YFY 131

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY- 183
           +  RI  S L++   EGLI+ +    G +       S    E     +   ++    +Y 
Sbjct: 132 RVPRIPRSQLEKY-REGLIIGSACDKGEVFEGMMQKSPDEVEDIAAFYDYLEVHPPEVYQ 190

Query: 184 ----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
               + L R     +   + +V+L      P+VAT N  +L +ED     +L++    
Sbjct: 191 HLLQLELVRDERALKEIITNIVKLGEKLNKPVVATGNVHYLHQEDKIYRKILISSQGG 248


>gi|92111600|gb|ABE73544.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score =  100 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 17/171 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
                 + P+V  +   +    D     +L A++ +  +S+     +     L +  E+ 
Sbjct: 7   DAGKEFDYPVVPLHTVRYFENSDRSTIQMLHAISQNVSLSEASICPMN--QLLFSPQEIE 64

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
           S +SD+PEAL N  ++    ++        LPRF      +      ++LR  A +GLE 
Sbjct: 65  SAYSDIPEALNNLEQLVSDITYQFDTDL-KLPRF------NRDMPAVDQLRQLAQSGLE- 116

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                  +K   +  Y++RLD EL++I +M F  YFLIV D +++ +    
Sbjct: 117 -------SKKLTSPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGY 160


>gi|92111598|gb|ABE73543.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score =  100 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 17/171 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
                 + P+V  +   +    D     +L A++ +  +S+     +     L +  E+ 
Sbjct: 7   DAGKEFDYPVVPLHTVRYFENSDRSTIQMLHAISQNVSLSEASICPMN--QLLFSPQEIE 64

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
           S +SD+PEAL N  ++    ++        LPRF      +      ++LR  A +GLE 
Sbjct: 65  SAYSDIPEALNNLGQLVSDITYQFDTDL-KLPRF------NRDMPAVDQLRQLAQSGLE- 116

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                  +K   +  Y++RLD EL++I +M F  YFLIV D +++ +    
Sbjct: 117 -------SKKLTSPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGY 160


>gi|92111606|gb|ABE73547.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 17/171 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
                 + P+V  +   +    D     +L A++ +  +S+     +     L +  EM 
Sbjct: 7   DAGKEFDYPVVPLHTVRYFENSDRSTIQMLHAISQNVSLSEASICPMN--QLLFSPQEME 64

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
           S +SD+PEAL N  ++    ++        LPRF      +      ++L   A +GLE 
Sbjct: 65  SAYSDIPEALNNLEQLVSDITYQFDTDL-KLPRF------NRDMPAVDQLSQLAQSGLE- 116

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                  +K   +  Y++RLD EL++I +M F  YFLIV D +++ +    
Sbjct: 117 -------SKKLTSAVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGY 160


>gi|92111576|gb|ABE73532.1| DNA polymerase III [Streptococcus vestibularis]
          Length = 160

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 17/171 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
                 + P++  +   +    D      L A++ +  +S+     +     L +  EM 
Sbjct: 7   DAGKEFDYPVIPLHTVRYFENADRSTIQTLHAISQNVSLSEASICPMN--QLLFSPQEME 64

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
           S +SD+PEAL N  ++    ++        LPRF      +      ++LR  A +GL+ 
Sbjct: 65  SAYSDIPEALNNLEQLVSDITYQFDTDL-KLPRF------NRDMPAVDQLRQLAQSGLD- 116

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                  +K      Y++RLD EL++I +M F  YFLIV D +++ +    
Sbjct: 117 -------SKALREPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGY 160


>gi|312602648|ref|YP_004022493.1| DNA polymerase III subunit alpha [Burkholderia rhizoxinica HKI 454]
 gi|312169962|emb|CBW76974.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia
           rhizoxinica HKI 454]
          Length = 153

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 44/92 (47%)

Query: 499 REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
           R        +++   ++  L G  RH S H+ G VI     S+LVP+      D  V Q+
Sbjct: 41  RRIFERALIIEQWATLAATLLGFPRHLSQHSGGFVISRGKPSRLVPIESAAMPDRSVIQW 100

Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           +   I+   L+K D L L  L +++++L  +A
Sbjct: 101 DKNDIDALELLKIDILALGMLPVIRRALALVA 132


>gi|92111580|gb|ABE73534.1| DNA polymerase III [Streptococcus vestibularis]
          Length = 160

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 17/171 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
                 + P++  +   +    D      L A++ +  +S+     +     L +  EM 
Sbjct: 7   DAGKEFDYPVIPLHTVRYFENADRSTIQTLHAISQNVSLSEVSICPMN--QLLFSPQEME 64

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
           S +SD+PEAL N  ++    S+    +   LPRF      +      ++LR  A +GL+ 
Sbjct: 65  SAYSDIPEALNNLEQLVSDVSYQFDTNL-KLPRF------NRDMPAVDQLRQLAQSGLD- 116

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                  +K      Y++RLD EL++I +M F  YFLIV D +++ +    
Sbjct: 117 -------SKALREPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGY 160


>gi|92111616|gb|ABE73552.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 17/171 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
                 + P+V  +   +    D     +L A++ +  +S+     +     L +  EM 
Sbjct: 7   DAGKEFDYPVVPLHTVRYFENADRSTIQMLHAISQNVSLSEASICPMN--QLLFSPQEME 64

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
           S +SD+PEAL N  ++    ++        LPRF      +      ++L   A +GLE 
Sbjct: 65  SAYSDIPEALNNLEQLVSDITYQFDTDL-KLPRF------NRDMPAVDQLSQLAQSGLE- 116

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                  +K   +  Y++RLD EL++I +M F  YFLIV D +++ +    
Sbjct: 117 -------SKKLTSAVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGY 160


>gi|220961822|gb|ACL93348.1| DNA polymerase III [Streptococcus thermophilus]
 gi|220961824|gb|ACL93349.1| DNA polymerase III [Streptococcus thermophilus]
          Length = 160

 Score = 99.3 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 17/171 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
                 + P+V  +   +    D      L A++ +  +S+     +     L +  EM 
Sbjct: 7   DAGKEFDYPVVPLHTVRYFENADRSTIQTLHAISQNVPLSEVSICPMN--QLLFSAKEME 64

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
             +S LPEAL N  ++    S+    +   LPRF      + +    ++LR  A +GL+ 
Sbjct: 65  EAYSKLPEALNNLNQLVSDVSYQFDTNL-KLPRF------NREMPAVDQLRQLAQSGLD- 116

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                  +K      Y++RLD EL++I +M F  YFLIV D +++ +    
Sbjct: 117 -------SKALREPAYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGY 160


>gi|160689348|gb|ABX45532.1| polymerase C [Bacillus subtilis subsp. spizizenii]
          Length = 259

 Score = 98.9 bits (245), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 69  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 120

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 121 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDVAAFY 178

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 179 DYLEVQPPEVYRHLLELELVRDEKSLKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 238

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 239 RKILISSQGG 248


>gi|160689366|gb|ABX45541.1| polymerase C [Bacillus sonorensis]
          Length = 259

 Score = 98.9 bits (245), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 71/190 (37%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            ++  + A    I           + +N+  +N  +   P      LL     G + L +
Sbjct: 69  LVKMLKDAAEKNI------LYHDQLNENMGQSNAYQRSRP--YHATLLAVNETGLKNLFK 120

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++ +   +  RI  S L E   EGL++ +    G +       S +  E     +
Sbjct: 121 LVSLAHI-NYFYRVPRIPRSQL-EKHREGLLIGSACDKGEVFEGMMQKSPEEVEDIASFY 178

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L     +P+VAT N  +L+ ED   
Sbjct: 179 DYLEVMPPEVYRHLIELELVRDEKALKEIITNITKLGDKLNIPVVATGNVHYLNPEDKIY 238

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 239 RKILISSQGG 248


>gi|92111610|gb|ABE73549.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score = 98.5 bits (244), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 17/171 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +    + P+V  +   +    D     +L A++ +  +S+     +     L +  E+ 
Sbjct: 7   DVGKEFDYPVVPLHTVRYFENADRSTIQMLHAISQNVSLSEASICPMN--QLLFSPQEIE 64

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
           S +SD+PEAL N  ++    ++        LPRF      +      ++LR  A +GLE 
Sbjct: 65  SAYSDIPEALNNLEQLVSDITYQFDTDL-KLPRF------NRDMPAVDQLRQLAQSGLE- 116

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                  +K   +  Y++RLD EL++I +M F  YFLIV D + + +    
Sbjct: 117 -------SKKLTSAVYQERLDKELSIIHQMGFDDYFLIVWDLLSFGRSRGY 160


>gi|220961830|gb|ACL93352.1| DNA polymerase III [Streptococcus thermophilus]
          Length = 160

 Score = 98.5 bits (244), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 17/171 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
                 + P+V  +   +    D      L A++ +  +S+     +     L +  EM 
Sbjct: 7   DAGKEFDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEVSICPMN--QLLFSAKEME 64

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
             +S LPEAL N  ++    S+    +   LPRF      + +    ++LR  A +GL+ 
Sbjct: 65  EAYSKLPEALNNLNQLVSDVSYQFDTNL-KLPRF------NREMPAVDQLRQLAQSGLD- 116

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                   K      Y++RLD EL++I +M F  YFLIV D +++ +    
Sbjct: 117 -------TKALREPAYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGY 160


>gi|92111590|gb|ABE73539.1| DNA polymerase III [Streptococcus salivarius]
          Length = 160

 Score = 98.5 bits (244), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 17/171 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
                 + P++  +   +    D     +L A++ +  +S+     +     L +  E+ 
Sbjct: 7   DAGKEFDYPVIPLHTVRYFENVDRSTIQMLHAISQNVSLSEASICPMN--QLLFSPQEIE 64

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
           S +SD+PEAL N  ++    ++        LPRF      +      ++LR  A +GLE 
Sbjct: 65  SAYSDIPEALNNLEQLVSDITYQFDTDL-KLPRF------NRDMPAVDQLRQLAQSGLET 117

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
           +   GA+        Y++RLD EL++I +M F  YFLIV D +++ +    
Sbjct: 118 KKLSGAV--------YQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGY 160


>gi|160689410|gb|ABX45563.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
          Length = 259

 Score = 98.5 bits (244), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 69  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 120

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 121 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDVASFY 178

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 179 DYLEVQPPEVYRHLLELELVRDEKSLKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 238

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 239 RKILISSQGG 248


>gi|160689338|gb|ABX45527.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
 gi|160689350|gb|ABX45533.1| polymerase C [Bacillus subtilis subsp. spizizenii]
 gi|160689352|gb|ABX45534.1| polymerase C [Bacillus subtilis subsp. spizizenii]
 gi|160689354|gb|ABX45535.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
 gi|160689356|gb|ABX45536.1| polymerase C [Bacillus subtilis subsp. spizizenii]
 gi|160689358|gb|ABX45537.1| polymerase C [Bacillus subtilis subsp. spizizenii]
 gi|160689360|gb|ABX45538.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
 gi|160689362|gb|ABX45539.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
 gi|160689412|gb|ABX45564.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
 gi|160689414|gb|ABX45565.1| polymerase C [Bacillus subtilis subsp. spizizenii]
 gi|293627263|gb|ADE58306.1| DNA polymerase III alpha subunit [Bacillus subtilis subsp.
           inaquosorum]
          Length = 259

 Score = 98.5 bits (244), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 69  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 120

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 121 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDVASFY 178

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 179 DYLEVQPPEVYRHLLELELVRDEKSLKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 238

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 239 RKILISSQGG 248


>gi|332148500|dbj|BAK20099.1| DNA polymerase III PolC [Bacillus subtilis]
 gi|332148512|dbj|BAK20105.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 250

 Score = 98.5 bits (244), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 65  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 116

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 117 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 174

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 175 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 234

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 235 RKILISSQGG 244


>gi|332148548|dbj|BAK20123.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 248

 Score = 98.5 bits (244), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 65  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 116

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 117 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 174

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 175 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 234

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 235 RKILISSQGG 244


>gi|220961826|gb|ACL93350.1| DNA polymerase III [Streptococcus thermophilus]
 gi|220961828|gb|ACL93351.1| DNA polymerase III [Streptococcus thermophilus]
          Length = 160

 Score = 98.5 bits (244), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 17/171 (9%)

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
                 + P+V  +   +    D      L A++ +  +S+     +     L +  EM 
Sbjct: 7   DAGKEFDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEVSICPMN--QLLFSAKEME 64

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
             +S LPEAL N  ++    S+    +   LPRF      + +    ++LR  A +GL+ 
Sbjct: 65  EAYSKLPEALNNLNQLVSDVSYQFDTNL-KLPRF------NREMPAVDQLRQLAQSGLD- 116

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                  +K      Y++RLD EL++I +M F  YFLIV D +++ +    
Sbjct: 117 -------SKALREPAYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGY 160


>gi|332148506|dbj|BAK20102.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 247

 Score = 98.1 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 65  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 116

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 117 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 174

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 175 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 234

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 235 RKILISSQGG 244


>gi|332148508|dbj|BAK20103.1| DNA polymerase III PolC [Bacillus subtilis]
 gi|332148510|dbj|BAK20104.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 256

 Score = 98.1 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 65  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 116

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 117 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 174

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 175 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 234

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 235 RKILISSQGG 244


>gi|332148552|dbj|BAK20125.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 256

 Score = 98.1 bits (243), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 65  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 116

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 117 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 174

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 175 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 234

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 235 RKILISSQGG 244


>gi|332148520|dbj|BAK20109.1| DNA polymerase III PolC [Bacillus subtilis]
 gi|332148532|dbj|BAK20115.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 257

 Score = 98.1 bits (243), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 66  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 117

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 118 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 175

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 176 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 235

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 236 RKILISSQGG 245


>gi|160689394|gb|ABX45555.1| polymerase C [Bacillus tequilensis]
          Length = 259

 Score = 98.1 bits (243), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 69  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 120

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 121 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDVASFY 178

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 179 DYLEVQPPEVYRHLLELELVRDEKSLKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 238

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 239 RKILVSSQGG 248


>gi|332148502|dbj|BAK20100.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 254

 Score = 98.1 bits (243), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 65  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 116

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 117 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 174

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 175 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 234

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 235 RKILISSQGG 244


>gi|332148516|dbj|BAK20107.1| DNA polymerase III PolC [Bacillus subtilis]
 gi|332148526|dbj|BAK20112.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 255

 Score = 98.1 bits (243), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 66  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 117

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 118 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 175

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 176 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 235

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 236 RKILISSQGG 245


>gi|332148504|dbj|BAK20101.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 253

 Score = 98.1 bits (243), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 64  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 115

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 116 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 173

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 174 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 233

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 234 RKILISSQGG 243


>gi|332148524|dbj|BAK20111.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 256

 Score = 98.1 bits (243), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 66  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 117

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 118 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 175

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 176 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 235

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 236 RKILISSQGG 245


>gi|332148538|dbj|BAK20118.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 256

 Score = 98.1 bits (243), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 66  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 117

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 118 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 175

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 176 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 235

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 236 RKILISSQGG 245


>gi|332148534|dbj|BAK20116.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
          Length = 230

 Score = 98.1 bits (243), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 50  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 101

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 102 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 159

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 160 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 219

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 220 RKILISSQGG 229


>gi|167579727|ref|ZP_02372601.1| error-prone DNA polymerase [Burkholderia thailandensis TXDOH]
          Length = 162

 Score = 98.1 bits (243), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 35/110 (31%), Gaps = 5/110 (4%)

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
               ++ A      + K  L   +  +       +   +G   + HP+ + +P L    + 
Sbjct: 2    PQRDLLAAAPIDEAVKPALGAPTEADDVF---ADYHTIGLTLNRHPVALLRPALDARRLS 58

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                      G   R   +V ++Q   T KG  + +VT  +         
Sbjct: 59   SAAALRDRRNGQLARACGLVTARQMPGTAKG--VLFVTLEDETGCVNVIV 106


>gi|332148522|dbj|BAK20110.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 252

 Score = 98.1 bits (243), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 61  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 112

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 113 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 170

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 171 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 230

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 231 RKILISSQGG 240


>gi|160689324|gb|ABX45520.1| polymerase C [Bacillus subtilis]
 gi|160689326|gb|ABX45521.1| polymerase C [Bacillus subtilis]
 gi|160689344|gb|ABX45530.1| polymerase C [Bacillus subtilis]
 gi|160689364|gb|ABX45540.1| polymerase C [Bacillus subtilis]
 gi|160689372|gb|ABX45544.1| polymerase C [Bacillus subtilis]
 gi|160689380|gb|ABX45548.1| polymerase C [Bacillus subtilis]
 gi|160689382|gb|ABX45549.1| polymerase C [Bacillus subtilis]
 gi|160689384|gb|ABX45550.1| polymerase C [Bacillus subtilis]
 gi|160689386|gb|ABX45551.1| polymerase C [Bacillus subtilis]
 gi|160689400|gb|ABX45558.1| polymerase C [Bacillus subtilis]
 gi|160689402|gb|ABX45559.1| polymerase C [Bacillus subtilis]
 gi|160689416|gb|ABX45566.1| polymerase C [Bacillus subtilis]
 gi|160689418|gb|ABX45567.1| polymerase C [Bacillus subtilis]
 gi|160689420|gb|ABX45568.1| polymerase C [Bacillus subtilis]
 gi|160689424|gb|ABX45570.1| polymerase C [Bacillus subtilis]
 gi|160689438|gb|ABX45577.1| polymerase C [Bacillus subtilis]
 gi|160689442|gb|ABX45579.1| polymerase C [Bacillus subtilis]
 gi|160689448|gb|ABX45582.1| polymerase C [Bacillus subtilis]
 gi|160689456|gb|ABX45586.1| polymerase C [Bacillus subtilis]
 gi|160689458|gb|ABX45587.1| polymerase C [Bacillus subtilis]
          Length = 259

 Score = 98.1 bits (243), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 69  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 120

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 121 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 178

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 179 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 238

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 239 RKILISSQGG 248


>gi|332148528|dbj|BAK20113.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 253

 Score = 97.7 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 63  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 114

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 115 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 172

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 173 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 232

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 233 RKILISSQGG 242


>gi|160689328|gb|ABX45522.1| polymerase C [Bacillus subtilis]
 gi|160689330|gb|ABX45523.1| polymerase C [Bacillus subtilis]
 gi|160689334|gb|ABX45525.1| polymerase C [Bacillus subtilis]
 gi|160689342|gb|ABX45529.1| polymerase C [Bacillus subtilis]
 gi|160689374|gb|ABX45545.1| polymerase C [Bacillus subtilis]
 gi|160689376|gb|ABX45546.1| polymerase C [Bacillus subtilis]
 gi|160689378|gb|ABX45547.1| polymerase C [Bacillus subtilis]
 gi|160689404|gb|ABX45560.1| polymerase C [Bacillus subtilis]
 gi|160689422|gb|ABX45569.1| polymerase C [Bacillus subtilis]
 gi|160689426|gb|ABX45571.1| polymerase C [Bacillus subtilis]
 gi|160689428|gb|ABX45572.1| polymerase C [Bacillus subtilis]
 gi|160689430|gb|ABX45573.1| polymerase C [Bacillus subtilis]
 gi|160689436|gb|ABX45576.1| polymerase C [Bacillus subtilis]
 gi|160689440|gb|ABX45578.1| polymerase C [Bacillus subtilis]
 gi|160689450|gb|ABX45583.1| polymerase C [Bacillus subtilis]
 gi|160689460|gb|ABX45588.1| polymerase C [Bacillus subtilis]
          Length = 259

 Score = 97.7 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 69  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 120

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 121 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 178

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 179 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 238

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 239 RKILISSQGG 248


>gi|332148546|dbj|BAK20122.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
          Length = 233

 Score = 97.7 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 54  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 105

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 106 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 163

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 164 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 223

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 224 RKILISSQGG 233


>gi|332148530|dbj|BAK20114.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 255

 Score = 97.7 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 63  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 114

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 115 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 172

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 173 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 232

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 233 RKILISSQGG 242


>gi|332148518|dbj|BAK20108.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 251

 Score = 97.7 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 61  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 112

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 113 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 170

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 171 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 230

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 231 RKILISSQGG 240


>gi|160689346|gb|ABX45531.1| polymerase C [Bacillus vallismortis]
          Length = 259

 Score = 97.7 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 69  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 120

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 121 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 178

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 179 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 238

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 239 RKILISSQGG 248


>gi|77410103|ref|ZP_00786629.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae COH1]
 gi|77171288|gb|EAO74631.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae COH1]
          Length = 202

 Score = 97.7 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 70/187 (37%), Gaps = 25/187 (13%)

Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            LGI +  ++ +R  +    P    +++ L  L     +                 +   
Sbjct: 1   MLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHGTDVWLG--------------NAQD 46

Query: 677 LIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
           LI   +     VI  ++ +M            + +  + +R+ +  KI E    ++  +I
Sbjct: 47  LIKEGIATLSTVIGCRDDIMVYLMHAGLQPKMAFTIMERVRKGLWLKISE---DERNGYI 103

Query: 734 SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
                N +      +  ++      Y F K+HAAAY +++ + A+ K HYP+ +  A  +
Sbjct: 104 QAMRDNNVPDWYIESCGKI-----KYMFPKAHAAAYVLMALRVAYFKVHYPIFYYCAYFS 158

Query: 794 LEMDNVE 800
           +     E
Sbjct: 159 IRAKAFE 165


>gi|332148514|dbj|BAK20106.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 252

 Score = 97.7 bits (242), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ         ++ +N+  +N  +   P      LL   + G + L +
Sbjct: 62  LLKMLKDAAEKGIQ------YHDELNENMGQSNAYQRSRP--YHATLLAVNSTGLKNLFK 113

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 114 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 171

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 172 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 231

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 232 RKILISSQGG 241


>gi|237799620|ref|ZP_04588081.1| error-prone DNA polymerase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022475|gb|EGI02532.1| error-prone DNA polymerase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 170

 Score = 97.7 bits (242), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 7/121 (5%)

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            A+W E         +F+   G     +TL   +V   +     +   LG     HPL + 
Sbjct: 2    ARW-EVAGVEAQRPLFSDLPG-EETHVTLPLPTV---AEDLVADYASLGTTLGPHPLALL 56

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +  L     +  ++ +       + LA +V+ +Q+  T  G  + +VT  +         
Sbjct: 57   RRQLTAKRFRSSQDLLTLENDRTLSLAGLVIGRQRPGTASG--VTFVTLEDEFGMVNVVV 114

Query: 1032 F 1032
            +
Sbjct: 115  W 115


>gi|282852083|ref|ZP_06261441.1| hypothetical protein HMPREF9209_1086 [Lactobacillus gasseri 224-1]
 gi|282556843|gb|EFB62447.1| hypothetical protein HMPREF9209_1086 [Lactobacillus gasseri 224-1]
          Length = 125

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 12/134 (8%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V LQ  SS++LLE    + ++ +        A+A+TD N     + F + A   GI+P++
Sbjct: 4   VSLQNLSSFTLLESPTKVKDLAENAKKKGYSALALTDVNITCGLVNFYKAAKETGIKPLL 63

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G Q          +   G         ++++    +GY+ ++ L S + LL +  +   +
Sbjct: 64  GMQ----------LRINGLIDQANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENV 113

Query: 132 CLSWLQEIGTEGLI 145
               L+E+    +I
Sbjct: 114 L--ELEELKNILVI 125


>gi|160689390|gb|ABX45553.1| polymerase C [Bacillus mojavensis]
 gi|160689392|gb|ABX45554.1| polymerase C [Bacillus mojavensis]
 gi|160689432|gb|ABX45574.1| polymerase C [Bacillus mojavensis]
          Length = 259

 Score = 97.0 bits (240), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 74/190 (38%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ          + +N+  +N  +   P      +L   + G + L +
Sbjct: 69  LLKMLEDAAEKGIQ------YHDQLNENMGQSNAYQRSRP--YHATVLAVNSTGLKNLFK 120

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 121 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDVASFY 178

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 179 DYLEVQPPEVYRHLLELELVRDEKSLKEIITNITKLGEKLNKPVVATGNVHYLNDEDKIY 238

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 239 RKILVSSQGG 248


>gi|325522079|gb|EGD00751.1| DNA polymerase III, alpha subunit [Burkholderia sp. TJI49]
          Length = 165

 Score = 97.0 bits (240), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 2/95 (2%)

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
             +      +       + R +GF    HPL + +  L    ++  E+      G   R  
Sbjct: 19   AVPALPQASEGKEIVTDYRAMGFTLGRHPLALLRDRLTLDRLQSAEQLATLRSGQLARAC 78

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +V  +Q+  T  G  + ++T  +   +     +P
Sbjct: 79   GLVTVRQRPGTANG--VLFMTLEDETGQVNVILWP 111


>gi|160689340|gb|ABX45528.1| polymerase C [Bacillus mojavensis]
          Length = 259

 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 74/190 (38%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            ++  + A   GIQ          + +N+  +N  +   P      +L   + G + L +
Sbjct: 69  LMKMLEDAAEKGIQ------YHDQLNENMGQSNAYQRSRP--YHATVLAVNSTGLKNLFK 120

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 121 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDVASFY 178

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 179 DYLEVQPPEVYRHLLELELVRDEKSLKEIITNITKLGEKLNKPVVATGNVHYLNDEDKIY 238

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 239 RKILVSSQGG 248


>gi|218660270|ref|ZP_03516200.1| DNA polymerase III alpha subunit protein [Rhizobium etli IE4771]
          Length = 228

 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 2/94 (2%)

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
            T  K        +   + R L      HP+   +  LRK GI    + +    G  + +A
Sbjct: 26   TAAKLPDMLPGEQVIEDYRYLSLSLKAHPVSFLREELRKAGITRNVDLLTVPNGKRVTIA 85

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +V+ +Q+  + KG  + ++T  +      A  +
Sbjct: 86   GLVLVRQRPGSAKG--VIFMTLEDETGVANAIVW 117


>gi|227495219|ref|ZP_03925535.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
 gi|226831671|gb|EEH64054.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
          Length = 117

 Score = 95.8 bits (237), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 12/116 (10%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SP +  L  HS YS L GA    +++D         IA+ D + ++ A++ +Q A    +
Sbjct: 2   SPEYAELHAHSCYSFLHGADQPPHLIDTALKLGLTGIALIDYDGVYGAVQTAQAAKNTPL 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
           + + G +L ++             P   +  + +L +   GY ++ +L+S   L  
Sbjct: 62  KTVFGTELTLN------------DPTYGLTHLPVLANNLNGYHQICKLISTKQLHH 105


>gi|270661252|ref|ZP_06222402.1| DNA polymerase III, alpha subunit [Haemophilus influenzae HK1212]
 gi|270316901|gb|EFA28605.1| DNA polymerase III, alpha subunit [Haemophilus influenzae HK1212]
          Length = 115

 Score = 95.8 bits (237), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 38/67 (56%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1  MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65 AGIQPII 71
          +G++PI 
Sbjct: 61 SGMKPIQ 67


>gi|257487761|ref|ZP_05641802.1| error-prone DNA polymerase [Pseudomonas syringae pv. tabaci ATCC
            11528]
          Length = 149

 Score = 94.3 bits (233), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
              +   +     +   LG     HPL + +  L     +  ++ ++      + +A +V+
Sbjct: 7    LPLPTVAEDLMADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENDRTLSVAGLVI 66

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +Q+  T  G  + +VT  +         +
Sbjct: 67   GRQRPGTASG--VTFVTLEDEFGMVNVVVW 94


>gi|218507046|ref|ZP_03504924.1| DNA polymerase III protein, alpha subunit [Rhizobium etli Brasil 5]
          Length = 160

 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 11/158 (6%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-- 62
           ++   +F  +   +++S LEGA S   ++ + A  +   + I D N++   +    +A  
Sbjct: 1   MKGERAFFEIGARTNFSFLEGASSPEEMVLQAAHLRLGGLGIADRNSVAGVVRAHAQAEQ 60

Query: 63  -------CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIE 114
                    A +           +   +++    +  F    P I+       G+  L  
Sbjct: 61  IEERYKNRDAILAEAEKTGKKERIFHPIRIQPGARLVFSDDTPDILAYPCNRRGWANLCR 120

Query: 115 LVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGS 151
           L+S   L ++  K S  +  + L E G E ++ L    
Sbjct: 121 LLSAGNLKEEAVKGSCILTEAELMEWGDEMMLALVADR 158


>gi|213026945|ref|ZP_03341392.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 98

 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 94  PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG 153
             +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  EGLI+L+GG  G
Sbjct: 6   DELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-KEGLILLSGGRMG 64

Query: 154 PIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            + R     +  + E+ +  ++  F DR ++ L
Sbjct: 65  DVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 97


>gi|160689434|gb|ABX45575.1| polymerase C [Bacillus amyloliquefaciens]
          Length = 259

 Score = 93.5 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 9/178 (5%)

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++      +    Q N  M               LL     G + L +LVS  ++     
Sbjct: 73  LKDAAEKDIFYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFKLVSISHI-QYFY 131

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
           +  RI  S L +   EGL++ +    G +       S +  E     +        +++ 
Sbjct: 132 RVPRIPRSQLDKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLEVQPPEVYR 190

Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             L + L R     +   + + +L      P+VAT N  +L++ED     +L++    
Sbjct: 191 HLLQLELVRDEKALKEIITNITKLGEKLNKPVVATGNVHYLNDEDKIYRKILVSSQGG 248


>gi|328479971|gb|EGF49011.1| DNA polymerase III PolC [Lactobacillus rhamnosus MTCC 5462]
          Length = 155

 Score = 93.5 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 55/145 (37%), Gaps = 16/145 (11%)

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVI 348
            I    DD     +++L    V G+E +L    +A  Y        +   QRLD EL  I
Sbjct: 7   LIAGWIDDNITPVKDKLYTPEVPGVEEKLKHDVMATAYELYGNPLPEIVAQRLDKELKSI 66

Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------R 399
               FS  + I    +  + K+   VG  RGS   S+ A    IT+++PL         +
Sbjct: 67  IGNGFSVIYNIAQRLVLKSNKDGYLVG-SRGSVGSSLAATMAEITEVNPLPPHYRCPKCQ 125

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQ 424
           +S  F          +PD     C 
Sbjct: 126 YSEFFTHGEVGSGFDLPDKTCPKCG 150


>gi|160689336|gb|ABX45526.1| polymerase C [Bacillus amyloliquefaciens]
          Length = 259

 Score = 93.5 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 9/178 (5%)

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++      +    Q N  M               LL     G + L +LVS  ++     
Sbjct: 73  LKDAAEKDIFYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFKLVSISHI-QYFY 131

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
           +  RI  S L +   EGL++ +    G +       S +  E     +        +++ 
Sbjct: 132 RVPRIPRSQLDKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLEVQPPEVYR 190

Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             L + L R     +   + + +L      P+VAT N  +L++ED     +L++    
Sbjct: 191 HLLQLELVRDEKALKEIITNITKLGEKLNKPVVATGNVHYLNDEDKIYRKILVSSQGG 248


>gi|295091740|emb|CBK77847.1| hypothetical protein [Clostridium cf. saccharolyticum K10]
          Length = 179

 Score = 93.5 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 37/169 (21%)

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKI-------- 802
            F K+HAAAY +++++ A+ K  YP+ + AA  ++              EK+        
Sbjct: 1   MFPKAHAAAYVMMAWRIAYCKVFYPLAYYAAFFSIRASGFSYELMCQGREKLEYHLADYK 60

Query: 803 ----------------KKFCQDARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGV 845
                            +  Q+      + MP  +      +F++ D ++  SL++I G+
Sbjct: 61  KRLDTLSKKEQDTLRDMRIVQEMYARGFEFMPIDIYRASARNFQIIDGKLMPSLSSIDGL 120

Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
           G   A  I+ A+ D PF S EDF +R    K+ + V + +   G L   
Sbjct: 121 GEKAADGIVFAAEDGPFLSKEDFINR---SKVTKTVADLMADLGLLKGL 166


>gi|160689446|gb|ABX45581.1| polymerase C [Bacillus atrophaeus]
          Length = 259

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 73/190 (38%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A    IQ          + +N+  +N  +   P      LL     G + L +
Sbjct: 69  LLKMLKDAAEKDIQ------YHDQLNENMGQSNAYQRSRP--YHATLLAVNDTGLKNLFK 120

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 121 LVSMSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 178

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L    + P+VAT N  +L++ED   
Sbjct: 179 DYLEVQPPEVYRHLLQLELVRDEKALKEIITNITKLGEKLDKPVVATGNVHYLNDEDKIY 238

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 239 RKILISSQGG 248


>gi|313618735|gb|EFR90649.1| DNA polymerase III, alpha subunit [Listeria innocua FSL S4-378]
          Length = 212

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            K    K +  +   + E E+   G Y S HP+  Y+  L+ + I       +   G   +
Sbjct: 5    KPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLASVSS---GKIYQ 61

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 62   VAAYVHEVKSIRTKKGETMCFLTISDESKELSAVMFP 98


>gi|160689452|gb|ABX45584.1| polymerase C [Bacillus atrophaeus]
          Length = 259

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 73/190 (38%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A    IQ          + +N+  +N  +   P      LL     G + L +
Sbjct: 69  LLKMLKDAAEKDIQ------YHDQLNENMGQSNAYQRSRP--YHATLLAVNDTGLKNLFK 120

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 121 LVSMSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 178

Query: 175 K-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                   +++   L + L R     +   + + +L    + P+VAT N  +L++ED   
Sbjct: 179 DYLEVQPPEVYRHLLQLELVRDEKALKEIITNITKLGEKLDKPVVATGNVHYLNDEDKIY 238

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 239 RKILISSQGG 248


>gi|313623606|gb|EFR93775.1| DNA polymerase III, alpha subunit [Listeria innocua FSL J1-023]
          Length = 212

 Score = 93.1 bits (230), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            K    K +  +   + E E+   G Y S HP+  Y+  L+ + I       +   G   +
Sbjct: 5    KPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLASVSS---GKIYQ 61

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 62   VAAYVHEVKSIRTKKGETMCFLTISDESKELSAVMFP 98


>gi|160689368|gb|ABX45542.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689370|gb|ABX45543.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689396|gb|ABX45556.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689398|gb|ABX45557.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689444|gb|ABX45580.1| polymerase C [Bacillus amyloliquefaciens]
          Length = 259

 Score = 92.7 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 9/178 (5%)

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++      +    Q N  M               LL     G + L +LVS  ++     
Sbjct: 73  LKDAAEKDIFYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFKLVSISHI-QYFY 131

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
           +  RI  S L +   EGL++ +    G +       S +  E     +        +++ 
Sbjct: 132 RVPRIPRSQLNKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLEVQPPEVYR 190

Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             L + L R     +   + + +L      P+VAT N  +L++ED     +L++    
Sbjct: 191 HLLQLELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIYRKILISSQGG 248


>gi|330974636|gb|EGH74702.1| error-prone DNA polymerase [Pseudomonas syringae pv. aceris str.
          M302273PT]
          Length = 74

 Score = 92.7 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 32/70 (45%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +  L   S++S   GA S   + ++       A+AITD   L   +   Q + + G+  I
Sbjct: 5  YAELHCLSNFSFQRGASSARELFERALRHGYKALAITDECTLAGIVRAWQASKSTGLPLI 64

Query: 71 IGCQLDIDMQ 80
          +G ++ I+  
Sbjct: 65 VGSEMHIENG 74


>gi|160689332|gb|ABX45524.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689388|gb|ABX45552.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689406|gb|ABX45561.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689408|gb|ABX45562.1| polymerase C [Bacillus amyloliquefaciens]
          Length = 259

 Score = 92.7 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 9/178 (5%)

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++      +    Q N  M               LL     G + L +LVS  ++     
Sbjct: 73  LKDAAEKDIFYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFKLVSISHI-QYFY 131

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
           +  RI  S L +   EGL++ +    G +       S +  E     +        +++ 
Sbjct: 132 RVPRIPRSQLNKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLEVQPPEVYR 190

Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             L + L R     +   + + +L      P+VAT N  +L++ED     +L++    
Sbjct: 191 HLLQLELVRDEKALKEIITNITKLGEKLNKPVVATGNVHYLNDEDKIYRKILISSQGG 248


>gi|289673971|ref|ZP_06494861.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae FF5]
          Length = 150

 Score = 92.7 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
              +   +     +   LG     HPL + +  L     +  ++ +       + +A +V+
Sbjct: 8    LPLPTVAEDLVADYTTLGTTLGPHPLALLRRQLAAKRFRSSQDLLHLENDRTLSVAGLVI 67

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +Q+  T  G  + +VT  +         +
Sbjct: 68   GRQRPGTASG--VTFVTLEDEFGMVNVVVW 95


>gi|289673969|ref|ZP_06494859.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae FF5]
          Length = 85

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 41/80 (51%)

Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
             +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W+K H P  F  A 
Sbjct: 1   MRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPAAFTCAL 60

Query: 792 MTLEMDNVEKIKKFCQDARQ 811
           +           +  QDAR+
Sbjct: 61  INSWPMGFYSPDQLLQDARR 80


>gi|289673963|ref|ZP_06494853.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae FF5]
          Length = 145

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 27/168 (16%)

Query: 47  TDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA 106
           TD   L   +   Q + + G+  I+G ++ I+                  P +VLLV   
Sbjct: 1   TDECTLAGIVRAWQASKSTGLPLIVGSEMHIEHG----------------PKVVLLVENQ 44

Query: 107 EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
            GY+ L  L++      + K   R+      E    GL+ L                +Q 
Sbjct: 45  TGYEALCTLITVARRRAK-KGEYRVLREDF-EPAPAGLLAL--------WLPNLDGDAQA 94

Query: 167 AEKRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVA 213
                   ++ F +RL++ +  HRG  D  R + ++ LA +  +P VA
Sbjct: 95  CLAGGRWLRERFAERLWLGVGLHRGPDDEQRLADLLALAQSLGIPAVA 142


>gi|47176989|ref|YP_015600.1| DNA polymerase III alpha chain [Oligotropha carboxidovorans OM5]
 gi|7159964|emb|CAB76244.1| DNA-polymerase III-alpha chain [Oligotropha carboxidovorans OM5]
          Length = 112

 Score = 91.6 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 4/94 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +  LQV S +S L GA S   +  + A     A+A+ D N+L   +   + A A G++ 
Sbjct: 5   RYAELQVTSQFSFLRGASSCEELFAQAALLGIEALAVADRNSLAGVVRAHEAANATGVRL 64

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           I         + + ++ + G +         +  
Sbjct: 65  IRRL----SPRSHGRLFDPGLSNRSRRLCAAVPA 94


>gi|169841567|ref|ZP_02874680.1| dnaE [candidate division TM7 single-cell isolate TM7a]
          Length = 70

 Score = 90.8 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 48/68 (70%)

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                T G+FQLES+GM++ L  ++P+  EDIIA+V+LYRPGP+  I  +  RK+G+E I
Sbjct: 1   FQRGDTTGVFQLESAGMKRYLRELKPEVFEDIIAMVALYRPGPMQFIDSFIKRKHGEEDI 60

Query: 672 VSIHPLID 679
           + +HP ++
Sbjct: 61  IYLHPGME 68


>gi|302533608|ref|ZP_07285950.1| DNA polymerase III alpha subunit [Streptomyces sp. C]
 gi|302442503|gb|EFL14319.1| DNA polymerase III alpha subunit [Streptomyces sp. C]
          Length = 148

 Score = 90.8 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 38/67 (56%)

Query: 7  KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
          + P F HL   S +S+  GA     + ++ A     A+A+TD ++L  A+ F++ A AAG
Sbjct: 30 RVPGFTHLHTVSGFSVRYGASHPERLAERAAERGMDALALTDRDSLAGAVRFAKAAAAAG 89

Query: 67 IQPIIGC 73
          I+P+ G 
Sbjct: 90 IRPLFGV 96


>gi|239996958|ref|ZP_04717482.1| DNA polymerase III, alpha subunit [Alteromonas macleodii ATCC
           27126]
          Length = 111

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 14/112 (12%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L   S+YS L GA S   ++   +     A+AITD  ++   +    +    G+   
Sbjct: 3   YSELFCQSNYSFLCGASSPAELVTTASFLGYDALAITDECSVAGVVRAFDEIKHQGLPIT 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
           +         D L              S VLL      Y  L  +++     
Sbjct: 63  LIVGSYFVFDDTL--------------SFVLLCPNKAAYSELCRIITNARRR 100


>gi|330993051|ref|ZP_08316989.1| Error-prone DNA polymerase 1 [Gluconacetobacter sp. SXCC-1]
 gi|329759821|gb|EGG76327.1| Error-prone DNA polymerase 1 [Gluconacetobacter sp. SXCC-1]
          Length = 167

 Score = 90.0 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
              + L+        VR   +   LG     HPL   +  L+  GI   + ++A   G  +
Sbjct: 2    PSVLLQPMRDGAEVVR---DYNRLGLTLRNHPLTFLRGDLQTRGIISCQHALAAKDGKRL 58

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +A +V+ +Q+  + +G  + ++T  +         +P
Sbjct: 59   TVAGLVLVRQRPGSAEG--VVFMTLEDETANMNVIIWP 94


>gi|169835547|ref|ZP_02868735.1| DNA polymerase III DnaE [candidate division TM7 single-cell isolate
           TM7a]
          Length = 85

 Score = 90.0 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 39  DQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS 98
               A AITD   L  A+EF ++A  AGI+PIIG +  +  +       Q          
Sbjct: 1   MGMEACAITDHGTLSGAIEFYKEAKKAGIKPIIGMEAYVAARGRADRDPQKDKAR---YH 57

Query: 99  IVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           +VLL    +GYQ L+ L +   L     
Sbjct: 58  LVLLAMNHKGYQNLMRLSTIANLEGMYY 85


>gi|332148536|dbj|BAK20117.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
 gi|332148540|dbj|BAK20119.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
 gi|332148542|dbj|BAK20120.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
 gi|332148544|dbj|BAK20121.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
 gi|332148550|dbj|BAK20124.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
          Length = 238

 Score = 90.0 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 64/179 (35%), Gaps = 9/179 (5%)

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++      +    Q N  M               LL     G + L +LVS  ++     
Sbjct: 60  LKDAAEKDIFYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFKLVSISHI-QYFY 118

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFG 179
           +  RI  S L +   EGL++ +    G +       S +  E     +        +++ 
Sbjct: 119 RVPRIPRSQLNKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLEVQPPEVYR 177

Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             L + L R     +   + + +L      P+VAT N  +L++ED     +L++ A   
Sbjct: 178 HLLQLELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIYRKILISSARRR 236


>gi|239992083|ref|ZP_04712747.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL
          11379]
          Length = 59

 Score = 90.0 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          + K P F HL VH+ YSLL+GA    ++ +         IA+TD  NL  A +F   A  
Sbjct: 1  MTKPP-FTHLHVHTQYSLLDGAARFTDMFESANKMGMTHIAMTDHGNLHGAYDFFHSAKK 59


>gi|146320383|ref|YP_001200094.1| DNA polymerase III, alpha subunit [Streptococcus suis 98HAH33]
 gi|145691189|gb|ABP91694.1| DNA polymerase III, alpha subunit [Streptococcus suis 98HAH33]
          Length = 234

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 101/281 (35%), Gaps = 53/281 (18%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L   + Y+ ++  +++ + + +       A+ I D N+L++A  F +     G+QPII
Sbjct: 3   AQLDTKTVYTFMDSMVTIESYVGRGKELGYHALGIMDKNSLYAAYSFMESCNKMGLQPII 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           GC         L    QG+    T     L+  T  GY+ L+++ +        K + + 
Sbjct: 63  GC--------ELDWKLQGEEQDITT---QLIALTTRGYRNLLKISTA-------KMTGQD 104

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +++   +  I +       I+                      G   Y+ +     
Sbjct: 105 DFETIRQYLVD--IAVVVPYFSGIEHLEL------------------GVNYYIGVTVDTP 144

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
              ++++ +              +   F  EE  E+  VL A+  +  ++Q     V   
Sbjct: 145 VQDFKQAPL------------PIHTVRFFEEEQLESLQVLHAIRDNIPLNQV--SDVDSR 190

Query: 252 HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPI 291
             L +   + ++FS   P+A++N  ++       ++    I
Sbjct: 191 QKLLSADSLTNLFSNRFPQAVDNLRDLVAGHFLSIKYRFKI 231


>gi|46206142|ref|ZP_00210206.1| COG0587: DNA polymerase III, alpha subunit [Magnetospirillum
          magnetotacticum MS-1]
          Length = 72

 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
             P +  L  HS++S L+GA     +  + A      +A TD   L+  + F + A  
Sbjct: 5  TTGPRYAELHAHSAFSFLDGASHPEELAAEGARLGLSGLAGTDHEGLYGVVRFDEGARK 63


>gi|222083078|ref|YP_002542443.1| DNA polymerase-related protein [Agrobacterium radiobacter K84]
 gi|221727757|gb|ACM30846.1| DNA polymerase-related protein [Agrobacterium radiobacter K84]
          Length = 210

 Score = 88.5 bits (218), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +   +G     HPL   +  L K  I    E++    G  +  A +V+ +Q+  + KG 
Sbjct: 31   EDYGHVGLTLRSHPLSFLRADLEKRRIVTCREAMQARDGTWLEAAGLVLVRQRPGSAKG- 89

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + ++T  +         +
Sbjct: 90   -VMFITIEDETGIANLVVW 107


>gi|298230238|ref|ZP_06963919.1| DNA polymerase III DnaE [Streptococcus pneumoniae str. Canada
           MDR_19F]
          Length = 172

 Score = 87.7 bits (216), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 77/222 (34%), Gaps = 52/222 (23%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3   AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++ + + D                ++  L  ++ GYQ+L++L +      QG+++  +
Sbjct: 63  GLEMTVFVDD-------------QEVNLRFLALSSVGYQQLMKLSTA---KMQGEKTWSV 106

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              +L++I    +I+                               F     + L    G
Sbjct: 107 LSQYLEDIA---VIV-----------------------------PYFDRVESLEL----G 130

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            D Y       LA     P++           D E   VL A
Sbjct: 131 CDYYIGVYPETLASEFHHPILPLYRVNAFESRDREVLQVLTA 172


>gi|253315123|ref|ZP_04838336.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
          Length = 107

 Score = 87.7 bits (216), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 13/107 (12%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI 
Sbjct: 3   AYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIF 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
           G  + +    N   T             V+L    +G + L +L S 
Sbjct: 63  GMTIYVTNGLNTVET-------------VVLAKNNDGLKDLYQLSSE 96


>gi|288919036|ref|ZP_06413377.1| DNA polymerase III alpha subunit-like protein [Frankia sp. EUN1f]
 gi|288349576|gb|EFC83812.1| DNA polymerase III alpha subunit-like protein [Frankia sp. EUN1f]
          Length = 190

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 61/183 (33%), Gaps = 18/183 (9%)

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS---------------QVAEKRLLTFKKLF 178
                       +LTG   G + RA                       A + L     LF
Sbjct: 6   EAFAAASGGHWQILTGCRKGAVPRALAAGEPAVEHERGMAVAERGVDAARRALDELVGLF 65

Query: 179 -GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
             + + V L       D  R   + +LA    LP+VAT N  F +         + AV  
Sbjct: 66  GRENVAVELWDRAAPLDSARNDALAELARDAGLPVVATGNVHFATPASARLAATMAAVRA 125

Query: 237 STVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
              + + D         +L++  EM + F   P A++    I   C+F L + AP LP F
Sbjct: 126 RRSLDEMDGWLPAAGTAHLRSGPEMAARFGRYPGAVDAAARIGAECAFGLDLVAPRLPDF 185

Query: 296 IEK 298
              
Sbjct: 186 PFP 188


>gi|255103312|ref|ZP_05332289.1| DNA polymerase III, alpha subunit [Clostridium difficile QCD-63q42]
          Length = 346

 Score = 86.2 bits (212), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 86/185 (46%), Gaps = 7/185 (3%)

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M +   +  +   K   ++    + ++++   A Y FN SH+ +YA  S   A++K+HYP
Sbjct: 1   MKEFHIKLKNNWIKKVGTENNFEDTWQVVNDAASYSFNASHSLSYAYDSLYCAYLKSHYP 60

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--FKVGDNRIYYSLAAI 842
           +E+   +  L  ++ E+ +K   +   F+I++  P       +  F    N IY  + +I
Sbjct: 61  LEYYTVAFNLYNEDTERTRKLTDEIEYFSIKLENPKFRFSKSEYFFNRDTNSIYKGIESI 120

Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL-NRRVLESLVFAGALDCFGYSRMQL 901
           K + +    ++  +  D  +DS  +    +D +   N + L  L+     + FG S  +L
Sbjct: 121 KFLNSDIGEYLY-SLKDNKYDSFLELL--IDLQGHINSKQLSILIKLDFFEEFGKS-NKL 176

Query: 902 LQSLD 906
           L++ D
Sbjct: 177 LETYD 181


>gi|297181302|gb|ADI17494.1| DNA polymerase III, alpha subunit [uncultured beta
          proteobacterium HF0130_04F21]
          Length = 66

 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          + +S SFVHL++H+ YS+ +  + +  +++K   D+QPAI ITD  N F+ ++F + A  
Sbjct: 1  MSES-SFVHLRLHTEYSISDSIVKIPRVIEKACLDRQPAIGITDLGNTFALMKFYRNARK 59

Query: 65 AGIQPI 70
           GI+PI
Sbjct: 60 KGIKPI 65


>gi|302668959|ref|YP_003832784.1| DNA polymerase III-associated phosphoesterase [Butyrivibrio
           proteoclasticus B316]
 gi|302397299|gb|ADL36202.1| DNA polymerase III-associated phosphoesterase [Butyrivibrio
           proteoclasticus B316]
          Length = 510

 Score = 84.6 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 54/156 (34%), Gaps = 15/156 (9%)

Query: 14  LQVHSSY-SLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA----CAAGIQ 68
           L  H+   S  +  L+++  L         ++++TD   ++  L   +            
Sbjct: 39  LHTHTDMGSAKDSILTVDEYLKTAIEMGARSVSVTDHAYMYGVLPLYKACETYNAEHKDA 98

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD---QG 125
             I C + ++      + ++ K     +  ++      +GY+ L  +V++          
Sbjct: 99  DPIKCIIGVEFYVCEDVEDKTKKKHTRL-HLIAYAKDEKGYKTLCSMVTKSNTRKIVAGK 157

Query: 126 KQSVRICLSWLQEI------GTEGLIMLTGGSSGPI 155
            +   I    L+E       G + +I+ +    G +
Sbjct: 158 NEYPCISKKILEEYMGPGTEGHDHIILTSACIGGVV 193



 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 61/157 (38%), Gaps = 10/157 (6%)

Query: 161 FNSSQVAEKRLLTFKKL-FGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSL 218
            N     +K +L ++ L      ++ +Q H    ++     + +LA   ++PLVA N++ 
Sbjct: 350 NNVEDAFKKEMLYYENLAGKGNWFIEMQFHGVANEKKYMHVLAKLANELDMPLVAANDAH 409

Query: 219 FLSEEDYEAHDVLMAVAHSTVVS-QKDRPRVTPDHYLKNRSEMVSIF------SDLPEAL 271
             + +   A  ++  +   T  S  +D      + YLK  +E+           D   A+
Sbjct: 410 MSTRDKVMARKIVNGLRFDTKGSRWQDPSAEEEEMYLKTDAELYQWLCKEISSDDAMNAM 469

Query: 272 ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            N   I   C+ +L       P+F   + ++     E
Sbjct: 470 INRDLIVDACNCVLTFGK-HYPKFPISDAEEFGDCSE 505


>gi|16266063|gb|AAL16728.1|AF358675_1 putative DNA polymerase III alpha chain [Helicobacter hepaticus]
          Length = 78

 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 54/77 (70%)

Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             + +YQEQVMQI Q + G+SL  AD++RRAMGKK  +EM + K+ F  GA K G ++  
Sbjct: 2   MVLFVYQEQVMQIVQRIGGFSLGGADLVRRAMGKKKLDEMLRLKKEFADGAQKQGYNRAK 61

Query: 746 AVNIFELLAKFADYGFN 762
           A +++E++ KFA YGFN
Sbjct: 62  AEDLWEIIVKFAGYGFN 78


>gi|258614448|ref|ZP_05712218.1| DNA polymerase III, alpha subunit [Enterococcus faecium DO]
          Length = 85

 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 37/73 (50%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3  FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71 IGCQLDIDMQDNL 83
          IG  L    ++ +
Sbjct: 63 IGLHLSYTYEEKI 75


>gi|293560685|ref|ZP_06677169.1| DNA polymerase III subunit alpha [Enterococcus faecium E1162]
 gi|291605359|gb|EFF34809.1| DNA polymerase III subunit alpha [Enterococcus faecium E1162]
          Length = 85

 Score = 83.5 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 35/70 (50%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3  FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71 IGCQLDIDMQ 80
          IG  L    +
Sbjct: 63 IGLHLSYTYE 72


>gi|330955875|gb|EGH56135.1| error-prone DNA polymerase [Pseudomonas syringae Cit 7]
          Length = 56

 Score = 82.7 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%)

Query: 8  SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
          +  +  L   S++S   GA S   + ++       A+AITD   L   +     A
Sbjct: 2  TSEYAELHCLSNFSFQRGASSARELFERALRHGYQALAITDECTLAGIVRAWPAA 56


>gi|238060268|ref|ZP_04604977.1| error-prone DNA polymerase [Micromonospora sp. ATCC 39149]
 gi|237882079|gb|EEP70907.1| error-prone DNA polymerase [Micromonospora sp. ATCC 39149]
          Length = 148

 Score = 82.7 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 2/93 (2%)

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
            T        +  R   +    G     HP    +  L  +G            G  IR+ 
Sbjct: 5    TAPTLPGMEAVDRLVADVWATGLSPESHPARFLRERLDALGAVPIARLGRVDPGRRIRVG 64

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             +V  +Q+  T  G  + ++   +         
Sbjct: 65   GIVTHRQRPATAGG--VTFLNLEDETGMLNVTC 95


>gi|309799630|ref|ZP_07693854.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302]
 gi|308116752|gb|EFO54204.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302]
          Length = 681

 Score = 82.7 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 67/183 (36%), Gaps = 8/183 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  ++   A     A+AITD  N+ S     + A  
Sbjct: 333 MPEGERRVEFHAHTNMSTMDALPEVEELIATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 392

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGIQ I G + +I       + N+ +        +V  V T      L  + + +  +  
Sbjct: 393 AGIQLIYGMEANIVEDRVPIVYNEVEVDLSEATYVVFDVETT----GLSAIYNDLIQVAA 448

Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            K      ++   E    G  L   T   +G  D      +++   + L  F++   D +
Sbjct: 449 SKMYKGNIIAEFDEFINPGHHLSAFTTELTGITDDHV--KNAKPLVQVLKEFQEFCKDTV 506

Query: 183 YVN 185
            V 
Sbjct: 507 LVA 509



 Score = 52.7 bits (125), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
           NL + +        V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 602 NLDLISPDSYKKARVKHATIYVKNQVGLKNIFKLVSLSNT-QYFEGVPRIPRTVL-DAHR 659

Query: 142 EGLIMLTGGSSGPI 155
           EGLI+ +  + G +
Sbjct: 660 EGLILGSACTEGEV 673


>gi|255025012|ref|ZP_05296998.1| DNA polymerase III PolC [Listeria monocytogenes FSL J1-208]
          Length = 160

 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 34/157 (21%)

Query: 737 SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
            +  +        +    K   Y F K+HAAAY +++ + A+ K HYP+ F A   T+  
Sbjct: 4   MEEAMMANKVPLWYIESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHYPLYFYATYFTVRA 63

Query: 797 DNVE---------------------------------KIKKFCQDARQFNIQIMPPS-VN 822
           D+ +                                  + +   +               
Sbjct: 64  DDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQKVDLYK 123

Query: 823 TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
           +   +F +  + +     AI  +GT  A+ I+ A  +
Sbjct: 124 SSADEFLIDGDSLIPPFNAIPSLGTNVAKQIVAAREN 160


>gi|309805552|ref|ZP_07699597.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165203|gb|EFO67441.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c]
          Length = 758

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 60/150 (40%), Gaps = 9/150 (6%)

Query: 93  FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                 + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   
Sbjct: 590 RAKPNHMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQ 647

Query: 153 GPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-----VVQLAY 205
           G +  +          +  R+  F ++     Y +L   +     +E Q     + +L  
Sbjct: 648 GDVFISMMQKGYDATREKARIYDFLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKLGK 707

Query: 206 THELPLVATNNSLFLSEEDYEAHDVLMAVA 235
              +P+VAT+++ ++ ++D     +L++  
Sbjct: 708 ELGIPVVATSDAHYIDKKDAIYRKILLSAQ 737



 Score = 72.3 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 317 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 376

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++     L + N     +     ++  V T
Sbjct: 377 GYEANMINDQALLVLNPANMDYRGQEYVIFDVET 410


>gi|260579154|ref|ZP_05847046.1| error-prone DNA polymerase [Corynebacterium jeikeium ATCC 43734]
 gi|258602753|gb|EEW16038.1| error-prone DNA polymerase [Corynebacterium jeikeium ATCC 43734]
          Length = 208

 Score = 81.2 bits (199), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 45/164 (27%), Gaps = 38/164 (23%)

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGAL   G +R Q           A W       +   +     G  +           +
Sbjct: 1    AGALGSLGLTRRQ-----------AVWAAGVAATERPGMLPGTSGVHA-----PALPGMS 44

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRK--------------------MGIKGYEESV 987
            +     +E    G   + HP+ + +  L +                      +   +  +
Sbjct: 45   AFEMVASELATTGVTTAEHPVHLLREYLDEWHLRPAPRGAHSGDTAPRGGAAVVTADSLL 104

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                G  +R+A +V  +Q+  T  G  + +    +         
Sbjct: 105  RVPDGARLRVAGVVTHRQRPATAGG--VVFFGLEDETGLANIVV 146


>gi|319645712|ref|ZP_07999943.1| hypothetical protein HMPREF1012_00977 [Bacillus sp. BT1B_CT2]
 gi|317392259|gb|EFV73055.1| hypothetical protein HMPREF1012_00977 [Bacillus sp. BT1B_CT2]
          Length = 457

 Score = 80.8 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 28/168 (16%)

Query: 768 AYAVISYQTAWMKTHY-PVEFLAASMTLEMDNVE--------------------KIKKFC 806
           AY++I+ Q   +   Y P+ +  A +T+    VE                    K+    
Sbjct: 2   AYSIIALQELNLNYRYNPLYWNTACLTVNSGGVENEEESDDPDKKKKTQKTDYGKVASAI 61

Query: 807 QDARQFNIQIMPPSVNTPCVDFK--VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            + R+  I++  P +N     FK  + +N I + +  + G+G      I+   +++P+  
Sbjct: 62  GNIRRRGIKVDLPDINKAGFGFKADIENNSIIFGMKGMNGIGDEVVHQII---SNRPYTD 118

Query: 865 LEDFCSRVDSKKLNRR-VLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            EDF  R+    + ++  +  L+  G  D FG  R  L++S  ++   
Sbjct: 119 FEDFLERMYYSGIIKKGQVIQLIKGGCFDSFGE-RKDLMKSFISLISE 165


>gi|242065942|ref|XP_002454260.1| hypothetical protein SORBIDRAFT_04g027670 [Sorghum bicolor]
 gi|241934091|gb|EES07236.1| hypothetical protein SORBIDRAFT_04g027670 [Sorghum bicolor]
          Length = 427

 Score = 79.6 bits (195), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 9/132 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS++S  +G+LS  +++++   +    +A+TD + +    E  + A    I+ I 
Sbjct: 97  VELHAHSAFS--DGSLSPADLVERAHRNGVKVLALTDHDTMAGVPEAVEAAKQYPIRIIP 154

Query: 72  GCQLD-IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           G ++  +      +M+ +                  E  + L        + D      +
Sbjct: 155 GVEISAVHSPSGDEMSAEEPVHILAYYGAWGPAKPQELERFL------AIIRDGRYARAK 208

Query: 131 ICLSWLQEIGTE 142
             L  L+++G  
Sbjct: 209 QMLQKLKDLGMP 220


>gi|153846678|ref|ZP_01993880.1| error-prone DNA polymerase [Vibrio parahaemolyticus AQ3810]
 gi|149744874|gb|EDM56254.1| error-prone DNA polymerase [Vibrio parahaemolyticus AQ3810]
          Length = 144

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 13/117 (11%), Positives = 38/117 (32%), Gaps = 6/117 (5%)

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP--IL 975
             R    +++         ++ ++      +       +    G   + HP+ + +   IL
Sbjct: 3    ARWAAMDSLSDLPLFHHIEEPSVGYQVQPSEYESLIEDYASTGLSLNRHPITLLEEAGIL 62

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +      ++ V     + + +A +V  +Q   T  G  + + T  +         +
Sbjct: 63   PRF--TRMKQLVDKEHKSLVTVAGVVTGRQSPGTAAG--VTFFTLEDDTGNINVVVW 115


>gi|330955450|gb|EGH55710.1| hypothetical protein PSYCIT7_29776 [Pseudomonas syringae Cit 7]
          Length = 248

 Score = 78.9 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 8  SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL 56
          +  +  L   S++S   GA S   + ++       A+AITD   L   +
Sbjct: 2  TSEYAELHCLSNFSFQRGASSARELFERALRHGYQALAITDECTLAGIV 50


>gi|414429|gb|AAC43185.1| Homologous to Swiss-Prot Accession Number P13267, DNA polymerase
           III [Mycoplasma genitalium]
          Length = 129

 Score = 78.5 bits (192), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 55/162 (33%), Gaps = 38/162 (23%)

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           D D++F  + + +   YV+  +G     +  T  ++  K A        ++         
Sbjct: 1   DIDLNFSSEYQAKAHDYVRKLFGVNNTFRAGTIATVAEKTAYGYARNYFEI--------- 51

Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI-- 534
                     V L   A+  RF+                QKL G+ R    H  GI+I  
Sbjct: 52  -------IKRVDLATTAEIERFK----------------QKLIGIKRTTGQHPGGIMIFP 88

Query: 535 GDRPLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
            D  + +  P      DV S+   T F    +  A ++K D 
Sbjct: 89  SDHSVYEFTPCGFPADDVESEWKTTHFEYDALGDA-ILKLDI 129


>gi|77412699|ref|ZP_00788952.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
 gi|77161250|gb|EAO72308.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
          Length = 240

 Score = 78.5 bits (192), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +      V    H++ S ++   ++ +++D  A    PAIAITD  N+ S      +A  
Sbjct: 37  MPADQKRVEFHAHTNMSTMDALPTVESLIDTAAKWGHPAIAITDHANVQSFPHGYHRAKK 96

Query: 65  AGIQPII 71
           AGI+ I 
Sbjct: 97  AGIKAIF 103


>gi|309798624|ref|ZP_07692897.1| DNA polymerase III subunit alpha [Streptococcus infantis SK1302]
 gi|308117766|gb|EFO55169.1| DNA polymerase III subunit alpha [Streptococcus infantis SK1302]
          Length = 157

 Score = 78.5 bits (192), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)

Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
           +  DA +   ++ P S+NT     K+ +  IY  L +IKG+    A  I+E   ++PF S
Sbjct: 9   YILDALEMGFELTPLSLNTIPYQDKLTEKTIYLGLKSIKGMPRDFAYWILE---NRPFSS 65

Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
           +EDF +R+        +L  LV  G  D F  
Sbjct: 66  VEDFVTRLPKNYQKLSLLTPLVEIGLFDSFEK 97


>gi|75758943|ref|ZP_00739053.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
            israelensis ATCC 35646]
 gi|74493544|gb|EAO56650.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
            israelensis ATCC 35646]
          Length = 159

 Score = 77.7 bits (190), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 10/102 (9%)

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
            G   D   +E+ +     ++FE E+ VLG Y SGH LD             +E       
Sbjct: 6    GEAPDSELIEQITKYTDRIKFEKEREVLGLYISGHVLDRLAE------PTDWEGLDDATH 59

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               + L       +  +T+KG  + ++       E     FP
Sbjct: 60   TTMVAL----TEARVIRTKKGDNMAFLRVDTLEGERSLTLFP 97


>gi|258615946|ref|ZP_05713716.1| DNA polymerase III PolC [Enterococcus faecium DO]
          Length = 663

 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       AG++ + 
Sbjct: 341 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKAGVKILY 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++         N           +V  V T
Sbjct: 401 GVEANVVDDGVPIAYNDAHEALSEATYVVFDVET 434


>gi|220932020|ref|YP_002508928.1| PHP domain protein [Halothermothrix orenii H 168]
 gi|219993330|gb|ACL69933.1| PHP domain protein [Halothermothrix orenii H 168]
          Length = 270

 Score = 75.8 bits (185), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L +H++ S  +G+LS   ++ K       AIAITD + +   +   Q A  + ++ I 
Sbjct: 3  VDLHIHTNAS--DGSLSPGEVVKKAIDLGYKAIAITDHDTVAGIIPALQVARKSSLEVIP 60

Query: 72 GCQLDIDMQDN 82
          G +++ D++D 
Sbjct: 61 GIEINTDIEDR 71


>gi|309800242|ref|ZP_07694420.1| DNA polymerase III subunit alpha [Streptococcus infantis SK1302]
 gi|308116134|gb|EFO53632.1| DNA polymerase III subunit alpha [Streptococcus infantis SK1302]
          Length = 100

 Score = 75.0 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 38/72 (52%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            L   + YS +E  +S+   +D+  A    A+ I D +NL+ A  F ++    GIQP++
Sbjct: 3  AQLDTKTVYSFMESMISIQKYVDQGKAYGYSALGIMDIDNLYGAYYFIKECQKQGIQPLL 62

Query: 72 GCQLDIDMQDNL 83
          G ++ +  ++ L
Sbjct: 63 GLEVTVHHKEEL 74


>gi|315124218|ref|YP_004066222.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
            ICDCCJ07001]
 gi|315017940|gb|ADT66033.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
            ICDCCJ07001]
          Length = 234

 Score = 74.2 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 31/84 (36%)

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              +   E+ +LG Y SGHPLD +   +  +      +  +      I     +   +   
Sbjct: 1    MEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGEILSIGKIEDFKSMM 60

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            ++   R G +   +    ++A  F
Sbjct: 61   SKNNKRYGRIEILDYYSSFDATVF 84


>gi|149010468|ref|ZP_01831839.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP19-BS75]
 gi|147764949|gb|EDK71878.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP19-BS75]
          Length = 75

 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 33/70 (47%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3  AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72 GCQLDIDMQD 81
          G ++ + + D
Sbjct: 63 GLEMTVFVDD 72


>gi|167948889|ref|ZP_02535963.1| DNA polymerase III subunit alpha [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 86

 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 218 LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVE 276
            FL+ ED+EAH+V + +     +    RPR+  +  YL+ + EM  +F+D+PEAL N+VE
Sbjct: 2   RFLASEDFEAHEVRVCIHDGRTLEDSRRPRLYSELQYLRTQQEMCELFADIPEALANSVE 61

Query: 277 IARRCSFILQVHAPILPRFIEKE 299
           IA+RCS  +     +  R  +  
Sbjct: 62  IAKRCSPCVNSRQALPARLPDPP 84


>gi|266622988|ref|ZP_06115923.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
 gi|288865254|gb|EFC97552.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
          Length = 595

 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           V L  H+  S ++G   + +I+ +      PAIA+TD   + S  + +  
Sbjct: 437 VELHCHTKMSDMDGVSEVKDIVKRAKKWGMPAIAVTDHGCVQSFPDANHA 486


>gi|255578839|ref|XP_002530274.1| hypothetical protein RCOM_0265760 [Ricinus communis]
 gi|223530206|gb|EEF32114.1| hypothetical protein RCOM_0265760 [Ricinus communis]
          Length = 302

 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 4/130 (3%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  HS +S  +G LS + ++++   +    +A+TD + +    E  + A   GI+ I G
Sbjct: 100 ELHSHSKFS--DGFLSPSKLVERAHGNGVKVLALTDHDTMAGIPEAIEAARRFGIKIIPG 157

Query: 73  CQL--DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            ++       D   +    K              +  G   L  L  + +L         
Sbjct: 158 VEISTIYSPSDLADVYGLLKLGGSDYHGRGGNSESEVGSVNLPVLALQDFLKVARPVWCG 217

Query: 131 ICLSWLQEIG 140
                L+   
Sbjct: 218 AIRDILENYA 227


>gi|227872422|ref|ZP_03990766.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
 gi|227841719|gb|EEJ52005.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
          Length = 821

 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 10/135 (7%)

Query: 81  DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG 140
           D+L++   GK        I+LL     G   L  LVS+ +L    +   RI  S L++  
Sbjct: 692 DSLEVDQVGKVRKLPSYHIILLAKNDIGRINLYRLVSQSHL-QYFRMKPRIPKSLLKKY- 749

Query: 141 TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV 200
            EGLI+ +  SSG + +A    +       + +F        Y+ +Q         ES  
Sbjct: 750 REGLIIGSACSSGELFQAMVRGADDQQLLEIASFYD------YLEIQPLGNNAYMLESD- 802

Query: 201 VQLAYTHELPLVATN 215
            + +   E  L+A N
Sbjct: 803 -RFSAETEEDLIAYN 816



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 3   QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           + LEK    V L +H+  S ++G   +   +D+      PA+AITD   + +  +     
Sbjct: 421 EDLEKEKR-VELHLHTKMSDMDGVSDVEKYIDRALDFGMPAMAITDHGVVQAFPDAMAYL 479

Query: 63  CAAGIQP 69
              G Q 
Sbjct: 480 KKIGRQK 486


>gi|289609092|emb|CBI60500.1| unnamed protein product [Sordaria macrospora]
          Length = 78

 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 696 MQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
           M++A + + +S  EA+ LRRAM   +    + K +E+ I G ++ G     A   F  + 
Sbjct: 1   MKLAIVAADFSPGEANELRRAMATFRNPGTIQKLREKLIEGMTRRGYEPDFAERCFRQIE 60

Query: 755 KFADYGFNKSHAAAYAVI 772
            F  YGF +SHA ++A +
Sbjct: 61  GFGSYGFPESHALSFARL 78


>gi|303262213|ref|ZP_07348157.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP14-BS292]
 gi|302636536|gb|EFL67027.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP14-BS292]
          Length = 65

 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P+
Sbjct: 3  AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPL 61


>gi|309804220|ref|ZP_07698297.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d]
 gi|308163623|gb|EFO65893.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d]
          Length = 762

 Score = 72.3 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 321 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 380

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++     L + N     +     ++  V T
Sbjct: 381 GYEANMINDQALLVLNPANMDYRGQEYVIFDVET 414



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 55/141 (39%), Gaps = 9/141 (6%)

Query: 93  FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                 + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   
Sbjct: 594 RAKPNHMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQ 651

Query: 153 GPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-----VVQLAY 205
           G +  +          +  R+  F ++     Y +L   +     +E Q     + +L  
Sbjct: 652 GDVFISMMQKGYDATREKARIYDFLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKLGK 711

Query: 206 THELPLVATNNSLFLSEEDYE 226
              +P+VAT+++ ++ ++   
Sbjct: 712 ELGIPVVATSDAHYIDKKMQF 732


>gi|224059026|ref|XP_002299681.1| predicted protein [Populus trichocarpa]
 gi|222846939|gb|EEE84486.1| predicted protein [Populus trichocarpa]
          Length = 408

 Score = 71.9 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  HS +S  +G LS + ++++   +    +A+TD + +    E ++ A   GI+ I G
Sbjct: 46  ELHTHSKFS--DGFLSPSKLVERAHGNGVKVLALTDHDTMSGIPEATEAARRFGIKIIPG 103

Query: 73  CQLDIDMQDN 82
            ++       
Sbjct: 104 VEISTMFSPR 113


>gi|297569042|ref|YP_003690386.1| PHP domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296924957|gb|ADH85767.1| PHP domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 301

 Score = 71.9 bits (175), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
          +++ L  HS++S  +GAL+ + ++D        A+A+TD + +    +F   A    IQ 
Sbjct: 2  NWIDLHTHSTFS--DGALTPSELVDLALQRGLQALALTDHDTVAGLPDFLAAATDKPIQL 59

Query: 70 I 70
          I
Sbjct: 60 I 60


>gi|291542227|emb|CBL15337.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Ruminococcus bromii L2-63]
          Length = 283

 Score = 71.9 bits (175), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F  L  HS++S  +G  S   I+ K       A+A+ D N +    EF       G+  +
Sbjct: 2  FCDLHTHSTFS--DGTFSPTEIVLKAKEIGLDAVALCDHNTVAGLDEFVSAGKKYGVTTV 59

Query: 71 IGCQLDIDMQDN 82
           G +   +    
Sbjct: 60 SGIEFSTEYNSK 71


>gi|326497631|dbj|BAK05905.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 426

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 10/125 (8%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  HS++S  +G LS + ++++   +    +A+TD + +    E    A   GI+ I G
Sbjct: 70  ELHSHSNHS--DGFLSPSALVERAHRNGVKVLALTDHDTMAGIPEAMSSAHKCGIRIIPG 127

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-RMYLLDQGKQSVRI 131
            ++              + P    P  +L      G  R  EL S  + + D   Q  + 
Sbjct: 128 VEISALHSPR-------EIPGAGEPVHILAYYGMCGPSRFDELDSMLLNIRDGRYQRAKN 180

Query: 132 CLSWL 136
            L+ L
Sbjct: 181 MLAKL 185


>gi|125541161|gb|EAY87556.1| hypothetical protein OsI_08967 [Oryza sativa Indica Group]
          Length = 444

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 2/169 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +G+LS   ++ +   +    +A+TD + +    E  + A    I+ I 
Sbjct: 101 VELHAHSTCS--DGSLSPAALVQRAHRNGVKVLALTDHDTMAGVPEAIESAKQCSIRIIP 158

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++      +  +  +           +      E  + L  +    Y   +G      
Sbjct: 159 GVEISAMYSPSDGIGAEEPVHILAYYGSLGPAKPQELDRFLGSIRDGRYTRAKGMLLKLR 218

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L    E+     I   G + G +  A     +   E     F +   D
Sbjct: 219 SLDMPMELEDVCTIAGDGVAPGRLHVARAMVEAGYVENIRQAFSRYLYD 267


>gi|46390125|dbj|BAD15560.1| putative PHP domain N-terminal region:PHP domain C-terminal region
           [Oryza sativa Japonica Group]
 gi|46390228|dbj|BAD15659.1| putative PHP domain N-terminal region:PHP domain C-terminal region
           [Oryza sativa Japonica Group]
 gi|125583712|gb|EAZ24643.1| hypothetical protein OsJ_08411 [Oryza sativa Japonica Group]
          Length = 444

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 2/169 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +G+LS   ++ +   +    +A+TD + +    E  + A    I+ I 
Sbjct: 101 VELHAHSTCS--DGSLSPAALVQRAHRNGVKVLALTDHDTMAGVPEAIESAKQCSIRIIP 158

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++      +  +  +           +      E  + L  +    Y   +G      
Sbjct: 159 GVEISAMYSPSDGIGAEEPVHILAYYGSLGPAKPQELDRFLGSIRDGRYTRAKGMLLKLR 218

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L    E+     I   G + G +  A     +   E     F +   D
Sbjct: 219 SLDMPMELEDVCTIAGDGVAPGRLHVARAMVEAGYVENIRQAFSRYLYD 267


>gi|91203372|emb|CAJ71025.1| unknown protein [Candidatus Kuenenia stuttgartiensis]
          Length = 422

 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 6   EKSPSF--VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
           EK+P F    L +H+++S  +G  +   ++D+       AIAITD + +   L   +   
Sbjct: 145 EKAPDFGISDLHIHTNFS--DGTATPEEVVDEAIRLGLSAIAITDHDTIQGFLRADKYNK 202

Query: 64  AAGIQPII 71
              +Q I 
Sbjct: 203 GGNLQIIP 210


>gi|167464458|ref|ZP_02329547.1| DNA polymerase III PolC [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 686

 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 38/94 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G   +   +   A     AIAITD + +    + ++     G++ I 
Sbjct: 335 VEFHLHTTMSTMDGITPVGEYIKTAAKWGHKAIAITDHSGVQCYPDANKAGKKHGMKVIY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           G + ++       + N  +        +V  + T
Sbjct: 395 GLEANVVNDSVPIVENSKEIKLKEATYVVFDIET 428



 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 95  TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                 +      G + L  LVS  +  +   +   I  S L E+  EGLI+ +G   G 
Sbjct: 607 RPFHCCIYAKDMVGKKNLYRLVSLSHT-EYFHRVACIPKSKLIEL-REGLIIASGCEKGE 664

Query: 155 IDRAFFFNSSQVAEKRLLTFK 175
              A    S + AE     + 
Sbjct: 665 FFEAVLNKSMEEAEGIAEFYD 685


>gi|218192239|gb|EEC74666.1| hypothetical protein OsI_10344 [Oryza sativa Indica Group]
          Length = 429

 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  HS++S  +G LS + ++++   +    +A+TD + +    E    A   G++ I G
Sbjct: 73  ELHSHSNHS--DGFLSPSELVERAHRNGVKVLALTDHDTMAGIPEAVSAAHRFGMRIIPG 130

Query: 73  C 73
            
Sbjct: 131 V 131


>gi|115451271|ref|NP_001049236.1| Os03g0192000 [Oryza sativa Japonica Group]
 gi|108706612|gb|ABF94407.1| PHP domain C-terminal region family protein, expressed [Oryza
           sativa Japonica Group]
 gi|113547707|dbj|BAF11150.1| Os03g0192000 [Oryza sativa Japonica Group]
 gi|222624344|gb|EEE58476.1| hypothetical protein OsJ_09734 [Oryza sativa Japonica Group]
          Length = 429

 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  HS++S  +G LS + ++++   +    +A+TD + +    E    A   G++ I G
Sbjct: 73  ELHSHSNHS--DGFLSPSELVERAHRNGVKVLALTDHDTMAGIPEAVSAAHRFGMRIIPG 130

Query: 73  C 73
            
Sbjct: 131 V 131


>gi|218462587|ref|ZP_03502678.1| DNA polymerase III alpha subunit protein [Rhizobium etli Kim 5]
          Length = 170

 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +  LRK GI    + +    G  + +A +V+ +Q+  + KG  + ++T  +      A  
Sbjct: 1    REELRKAGITRNVDLLTVPNGKRVTIAGLVLVRQRPGSAKG--VIFMTLEDETGVANAIV 58

Query: 1032 F 1032
            +
Sbjct: 59   W 59


>gi|255030410|ref|ZP_05302361.1| DNA polymerase III PolC [Listeria monocytogenes LO28]
          Length = 459

 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 258 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 317


>gi|242277543|ref|YP_002989672.1| PHP domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242120437|gb|ACS78133.1| PHP domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 285

 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++         AIA+TD + +    E  +    +G++ + GC
Sbjct: 6  LHTHSTAS--DGTFTPKELVKAAKEAGLTAIALTDHDTMEGLPEALEAGVKSGVEVVPGC 63


>gi|240146857|ref|ZP_04745458.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
 gi|257200990|gb|EEU99274.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
          Length = 697

 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 4   YLEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            ++ SP   V L  H+  S ++G   + +I+ +       AIAITD  ++ +  + +  
Sbjct: 380 RMDTSPEKRVELHCHTKMSDMDGVSEVKDIVKRAMKWGHKAIAITDHGDVQAFPDANHA 438


>gi|33322829|gb|AAQ07150.1|AF496460_1 DNA polymerase III, alpha chain [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 90

 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
           D+  +   T F+   I    L+KFD LG +  T+++   D        +D   IP DD +
Sbjct: 7   DISKEWKTTHFDFHQIHD-NLLKFDILGHQDPTMIRMLQDL-----SGIDPLTIPTDDPK 60

Query: 608 TYHLLTTKGTLGIFQLES 625
              L ++   LG+   + 
Sbjct: 61  VMSLFSSPEALGVTPEQI 78


>gi|255522073|ref|ZP_05389310.1| DNA polymerase III PolC [Listeria monocytogenes FSL J1-175]
          Length = 444

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401


>gi|242036639|ref|XP_002465714.1| hypothetical protein SORBIDRAFT_01g044400 [Sorghum bicolor]
 gi|241919568|gb|EER92712.1| hypothetical protein SORBIDRAFT_01g044400 [Sorghum bicolor]
          Length = 418

 Score = 69.6 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  HS++S  +G LS + ++++   +    +A+TD + +    E    A   GI+ I G
Sbjct: 64  ELHSHSNHS--DGFLSPSALVERAHRNGVKVLALTDHDTMAGIPEAVSAASKFGIRIIPG 121

Query: 73  C 73
            
Sbjct: 122 V 122


>gi|254992868|ref|ZP_05275058.1| DNA polymerase III PolC [Listeria monocytogenes FSL J2-064]
          Length = 415

 Score = 69.6 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401


>gi|283782933|ref|YP_003373687.1| PHP domain protein [Gardnerella vaginalis 409-05]
 gi|283442217|gb|ADB14683.1| PHP domain protein [Gardnerella vaginalis 409-05]
          Length = 321

 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+ YS  +G  +  +++ +        +AITD +      +F + A A+ +  + G 
Sbjct: 47  LHCHTVYS--DGTATPEDLITQAKIVGLQGVAITDHDTTAGWHDFQEAAKASNVPVLFGS 104


>gi|297242785|ref|ZP_06926723.1| metal-dependent phosphoesterase (PHP family) [Gardnerella
          vaginalis AMD]
 gi|296888996|gb|EFH27730.1| metal-dependent phosphoesterase (PHP family) [Gardnerella
          vaginalis AMD]
          Length = 285

 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+ YS  +G  +  +++ +        +AITD +      +F + A A+ +  + G 
Sbjct: 11 LHCHTVYS--DGTATPEDLITQAKIVGLQGVAITDHDTTAGWHDFQEAAKASNVPVLFGS 68


>gi|258516249|ref|YP_003192471.1| PHP domain-containing protein [Desulfotomaculum acetoxidans DSM
          771]
 gi|257779954|gb|ACV63848.1| PHP domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 275

 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L VH++ S  +G  S   ++ +       AIAITD + L   L   ++A    I  + 
Sbjct: 3  VDLHVHTTAS--DGTDSPEEVVKRAWRLGLEAIAITDHDVLEGILPAQKEARDKNIDIVP 60

Query: 72 GC 73
          G 
Sbjct: 61 GV 62


>gi|148546652|ref|YP_001266754.1| phosphotransferase domain-containing protein [Pseudomonas putida
          F1]
 gi|148510710|gb|ABQ77570.1| PHP C-terminal domain protein [Pseudomonas putida F1]
          Length = 286

 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +GALS + ++ +       A+A+TD + L    E  Q     G++ + 
Sbjct: 3  VDLHCHSTAS--DGALSPSVLVARAHEHGVQALALTDHDTLEGLPEARQACVDLGMRWVS 60

Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
          G +L                P    P +
Sbjct: 61 GVELSCTWGGATIHVLGYDFPLDAPPLL 88


>gi|26991185|ref|NP_746610.1| trpH family protein [Pseudomonas putida KT2440]
 gi|24986232|gb|AAN70074.1|AE016647_4 trpH family protein [Pseudomonas putida KT2440]
          Length = 286

 Score = 69.2 bits (168), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +GALS + ++ +       A+A+TD + L    E  Q     G++ + 
Sbjct: 3  VDLHCHSTAS--DGALSPSVLVARAHEHGVQALALTDHDTLEGLPEARQACVDLGMRWVS 60

Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
          G +L                P    P +
Sbjct: 61 GVELSCTWGGATIHVLGYDFPLDAPPLL 88


>gi|294507082|ref|YP_003571140.1| hypothetical protein SRM_01266 [Salinibacter ruber M8]
 gi|294343409|emb|CBH24187.1| conserved hypothetical protein [Salinibacter ruber M8]
          Length = 531

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +  +P +  L  H+  S  +G L+   ++ + A     A A+TD + +       + A A
Sbjct: 255 MPDAPVYADLHTHTQCS--DGHLAPEALVARAAEQGLQAFAVTDHDTVAGLPAAREAAAA 312

Query: 65  AGIQPIIGCQLDIDMQDN-LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            G++ + G +L   +    + +   G  P  +  +  L   T+   +RL ++V R+    
Sbjct: 313 HGLRLVSGVELSTAVDGRGVHLLGYGFDPEHSALTDYLTAFTSRRRERLRQMVRRLADRG 372


>gi|298253435|ref|ZP_06977227.1| metal-dependent phosphoesterase (PHP family) [Gardnerella
          vaginalis 5-1]
 gi|297532830|gb|EFH71716.1| metal-dependent phosphoesterase (PHP family) [Gardnerella
          vaginalis 5-1]
          Length = 306

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+ YS  +G  +  +++ +        +AITD +      +F + A A+ +  + G 
Sbjct: 32 LHCHTVYS--DGTATPEDLITQAKIVGLQGVAITDHDTTAGWHDFQEAAKASNMPVLFGS 89


>gi|295091713|emb|CBK77820.1| Predicted metal-dependent phosphoesterases (PHP family)
           [Clostridium cf. saccharolyticum K10]
          Length = 315

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 69/182 (37%), Gaps = 15/182 (8%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           ++    ++ L VHSS S  +G ++   ++D  A     A+A+TD + +       + A  
Sbjct: 1   MKYIEEYIDLHVHSSAS--DGTMTPAEVVDCAAKAGLSAVALTDHDTVAGVAPALEAARI 58

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              + +   ++    + +    ++ K     +  + +   +      L       +L D 
Sbjct: 59  RADKGLYSPEVIPGTELSCIWEHEQKKTELHMLGLFVDCKSGA----LC-----AFLNDV 109

Query: 125 GKQSVRICLSWLQEIGTEGLIM----LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                R     LQ +  + + +    LTGG+   +     F S+ +A+  + T  + F  
Sbjct: 110 LAARERRNDEILQRLAADHIYLSRQELTGGNPDAVITRAHFASALIAKGIVSTTDQAFRR 169

Query: 181 RL 182
            L
Sbjct: 170 YL 171


>gi|217039454|gb|ACJ76886.1| DNA polymerase III alpha subunit [Streptococcus agalactiae]
 gi|217039456|gb|ACJ76887.1| DNA polymerase III alpha subunit [Streptococcus agalactiae]
 gi|217039458|gb|ACJ76888.1| DNA polymerase III alpha subunit [Streptococcus agalactiae]
 gi|217039462|gb|ACJ76890.1| DNA polymerase III alpha subunit [Streptococcus agalactiae]
 gi|217039464|gb|ACJ76891.1| DNA polymerase III alpha subunit [Streptococcus agalactiae]
 gi|217039466|gb|ACJ76892.1| DNA polymerase III alpha subunit [Streptococcus agalactiae]
          Length = 146

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 26/165 (15%)

Query: 608 TYHLLTT-KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
           T   + T  G LGI +  ++ +R  +    P    +++ L  L     +           
Sbjct: 4   TEEQIGTPTGMLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHGTDVWLG-------- 55

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKE 723
                 +   LI   +     VI  ++ +M            + +  + +R+ +  KI E
Sbjct: 56  ------NAQDLIKEGIATLSTVIGCRDDIMVYLMHAGLQPKMAFTIMERVRKGLWLKISE 109

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
               ++  +I     N +      +  ++      Y F K+HAAA
Sbjct: 110 ---DERNGYIQAMRDNNVPDWYIESCGKI-----KYMFPKAHAAA 146


>gi|83814693|ref|YP_445199.1| hypothetical protein SRU_1067 [Salinibacter ruber DSM 13855]
 gi|83756087|gb|ABC44200.1| conserved hypothetical protein [Salinibacter ruber DSM 13855]
          Length = 277

 Score = 68.5 bits (166), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +  +P +  L  H+  S  +G L+   ++ + A     A A+TD + +       + A A
Sbjct: 1   MPDAPVYADLHAHTQCS--DGHLAPEALVARAAEQGLQAFAVTDHDTVAGLPAAREAAAA 58

Query: 65  AGIQPIIGCQLDIDMQDN-LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            G++ + G +L   +    + +   G  P  +  +  L   T+   +RL ++V R+    
Sbjct: 59  HGLRLVPGVELSTAVDGRGVHLLGYGFDPEHSALTDYLTAFTSRRRERLRQMVRRLADRG 118


>gi|253700534|ref|YP_003021723.1| PHP domain protein [Geobacter sp. M21]
 gi|251775384|gb|ACT17965.1| PHP domain protein [Geobacter sp. M21]
          Length = 293

 Score = 68.5 bits (166), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 2/94 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+YS  +G  +   ++   A     AIA+ D + +    E      A G++ + 
Sbjct: 5   VDLHLHSTYS--DGVRTPAELVAMAAELGLKAIALADHDTVDGVDEAIAAGSAKGVEVLP 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
             +  +       +   G       P ++ ++  
Sbjct: 63  AMEFSVAFGSYRDVHLLGYLLDHHDPQLLAMLKD 96


>gi|226498434|ref|NP_001148541.1| protein trpH [Zea mays]
 gi|195620186|gb|ACG31923.1| protein trpH [Zea mays]
          Length = 416

 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  HS++S  +G LS + ++++   +    +A+TD + +    E    A   G++ I G
Sbjct: 62  ELHSHSNHS--DGFLSPSALVERAHRNGVKVLALTDHDTMAGIPEAVSAASKFGMRIIPG 119

Query: 73  C 73
            
Sbjct: 120 V 120


>gi|223974061|gb|ACN31218.1| unknown [Zea mays]
          Length = 416

 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  HS++S  +G LS + ++++   +    +A+TD + +    E    A   G++ I G
Sbjct: 62  ELHSHSNHS--DGFLSPSALVERAHRNGVKVLALTDHDTMAGIPEAVSAASKFGMRIIPG 119

Query: 73  C 73
            
Sbjct: 120 V 120


>gi|291087726|ref|ZP_06347295.2| PHP domain protein [Clostridium sp. M62/1]
 gi|291074122|gb|EFE11486.1| PHP domain protein [Clostridium sp. M62/1]
          Length = 343

 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 79/224 (35%), Gaps = 15/224 (6%)

Query: 4   YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
           +++    ++ L VHSS S  +G ++   ++D  A     A+A+TD + +       + A 
Sbjct: 28  FMKYIEEYIDLHVHSSAS--DGTMTPAEVVDCAAKAGLSAVALTDHDTVAGVATALEAAR 85

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
               + +   ++    + +    ++ K     +  + +   +      L       +L D
Sbjct: 86  IRADKGLYSPEVIPGTELSCIWEHEQKKTELHMLGLFVDCKSGA----LC-----AFLND 136

Query: 124 QGKQSVRICLSWLQEIGTEGLIM----LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
                 R     LQ +  + + +    LTGG+   +     F S+ +A+  + T  + F 
Sbjct: 137 VLAARERRNDEILQRLAADHIYLSRQELTGGNPDAVITRAHFASALIAKGIVSTTDQAFR 196

Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEE 223
             L    +     +     + VQL        V  +   +    
Sbjct: 197 RYLAAGGKYCPPKETVSPEKAVQLILQSGGFPVLAHPMRYHLSW 240


>gi|298217523|emb|CAA83841.2| DNA polymerase III (alpha) [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 121

 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 21/108 (19%)

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
           D+ S    T FB   I    L+K D LG    T L+   D        +D   IP DD  
Sbjct: 2   DLSSTWKTTHFBFHSIHD-NLLKMDILGHDDPTALRMLXD-----XTNIDPITIPTDDKN 55

Query: 608 TYHLLTT---------------KGTLGIFQLESSGMRQALEGMQPDCI 640
            Y L ++                G +GI +  +  +   L+  +    
Sbjct: 56  VYSLFSSLQALNXTSDKINDEITGAIGIPEFGTGFVXXMLKENKTKSF 103


>gi|77407423|ref|ZP_00784298.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae H36B]
 gi|77173967|gb|EAO76961.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae H36B]
          Length = 165

 Score = 68.1 bits (165), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 39/159 (24%)

Query: 772 ISYQTAWMKTHYPVEFLAASMTLE--------------------MDNVEKIK-------- 803
           +  + A++K HYP+ +  A  ++                      D  EK +        
Sbjct: 1   MPLRVAYLKVHYPIFYYCAIFSIRAKAFELRTMSAGLDAVKARMKDITEKRQRNEATNVE 60

Query: 804 -------KFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                  +   +  +   +        +   DF + ++ +     A++G+G   A+ I+ 
Sbjct: 61  NDLFTTLELVNEMLERGFKFGKLDLYRSHATDFIIEEDTLIPPFVAMEGLGENVAKQIVR 120

Query: 856 ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
           A  D  F S  +   R     ++  ++E     G L   
Sbjct: 121 AREDGEFLSKTELRKR---GGVSSTLVEKFDEMGILGNL 156


>gi|217039460|gb|ACJ76889.1| DNA polymerase III alpha subunit [Streptococcus agalactiae]
          Length = 146

 Score = 67.7 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 26/165 (15%)

Query: 608 TYHLLTT-KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
           T   + T  G LGI +  ++ +R  +    P    +++ L  L     +           
Sbjct: 4   TEEQIGTPTGMLGIPEFGTNFVRGMVNETHPTKFAELLQLSGLSHGTDVWLG-------- 55

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS---GYSLSEADVLRRAMGKKIKE 723
                 +   LI   +     VI  ++ +M            + +  + +R+ +  KI E
Sbjct: 56  ------NAQDLIKEGIATLSTVIGCRDDIMVYLMHAGLQPKMAFTIMERVRKGLWLKISE 109

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
               ++  +I     N +      +  ++      Y F K+HAAA
Sbjct: 110 ---DERNGYIQAMRDNNVPDWYIESCGKI-----KYMFPKAHAAA 146


>gi|94263315|ref|ZP_01287130.1| PHP-like [delta proteobacterium MLMS-1]
 gi|93456270|gb|EAT06400.1| PHP-like [delta proteobacterium MLMS-1]
          Length = 288

 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 5/108 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+YS  +G +    ++D        A+A+TD + +    +    A    I  + G 
Sbjct: 6   LHTHSTYS--DGTMGPEELIDLALRRGLGALALTDHDTVAGVPDLLAHAAGKDILVMAGI 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL--VSTAEGYQRLIELVSRM 119
           +L     ++              P ++ L  V  A   + L E+++R+
Sbjct: 64  ELSTWYGEDSMHILGYGIDHGHPPLLIALEEVQRARHRRNL-EILTRL 110


>gi|110834253|ref|YP_693112.1| polymerase and histidinol phosphatase PHP [Alcanivorax borkumensis
           SK2]
 gi|110647364|emb|CAL16840.1| Polymerase and Histidinol Phosphatase PHP, putative [Alcanivorax
           borkumensis SK2]
          Length = 278

 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +G LS  +++ + A      +A+TD + L    E  Q A A G+  I G 
Sbjct: 7   LHCHSLAS--DGTLSPTDLVARAADYGVTHLALTDHDTLRGLEEAHQAAQARGLTLINGI 64

Query: 74  QLDIDMQDN-LKMTNQGKTPFPTVPSIVLLVSTAE 107
           +L +   +    +               +      
Sbjct: 65  ELSVRHDNREFHILGLWVDVASAALQARVSAQNEA 99


>gi|317484872|ref|ZP_07943763.1| PHP domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316923880|gb|EFV45075.1| PHP domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 268

 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 9  PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          P FV L  H++ S  +G  +  +++ + A+ +  A+A+TD + +    E        G++
Sbjct: 3  PRFVDLHTHTTAS--DGTDAPRDLIRRAASLKLAAVAVTDHDTVSGLDEAEAAGREYGVE 60

Query: 69 PIIGC 73
           I GC
Sbjct: 61 IIRGC 65


>gi|46579069|ref|YP_009877.1| phosphotransferase domain-containing protein [Desulfovibrio
          vulgaris str. Hildenborough]
 gi|46448482|gb|AAS95136.1| PHP domain protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232914|gb|ADP85768.1| PHP domain protein [Desulfovibrio vulgaris RCH1]
          Length = 288

 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 8  SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          +P F+ L  H++ S  +G+ S  +++ K       A+A+TD + +    E        GI
Sbjct: 2  TPRFIDLHTHTTAS--DGSDSPADLVRKATEAGLAAVAVTDHDTVAGLDEAVAMGHETGI 59

Query: 68 QPIIGC 73
          + + GC
Sbjct: 60 EVVRGC 65


>gi|225159092|ref|ZP_03725399.1| DNA polymerase III, alpha subunit [Opitutaceae bacterium TAV2]
 gi|224802298|gb|EEG20563.1| DNA polymerase III, alpha subunit [Opitutaceae bacterium TAV2]
          Length = 229

 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             + + E+ +LGFY SGHPL+ Y  +L  +      E +        R+  +  +  +K +
Sbjct: 6    EKLQFEKELLGFYVSGHPLNDYDGLLEAIDSHFIHELLEQPDRTPFRIGGIAGTIAKKLS 65

Query: 1010 RK-GSRIGWVTFSEPAKEYEANFF 1032
            +K        + +      + N F
Sbjct: 66   KKDNRPWAAFSLATKEATLQLNMF 89


>gi|167967354|ref|ZP_02549631.1| error-prone DNA polymerase [Mycobacterium tuberculosis H37Ra]
          Length = 133

 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P    +  L  MG+   E   +   G+ + +A  V  +Q+  T +G  + ++   +    
Sbjct: 18   PTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQG--VTFINLEDETGM 75

Query: 1027 YEANF 1031
                 
Sbjct: 76   VNVLC 80


>gi|120603348|ref|YP_967748.1| phosphotransferase domain-containing protein [Desulfovibrio
          vulgaris DP4]
 gi|120563577|gb|ABM29321.1| PHP C-terminal domain protein [Desulfovibrio vulgaris DP4]
          Length = 288

 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 8  SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          +P F+ L  H++ S  +G+ S  +++ K       A+A+TD + +    E        GI
Sbjct: 2  TPRFIDLHTHTTAS--DGSDSPADLVRKATEAGLAAVAVTDHDTVAGLDEAVAMGHETGI 59

Query: 68 QPIIGC 73
          + + GC
Sbjct: 60 EVVRGC 65


>gi|149202134|ref|ZP_01879107.1| putative dna polymerase iii alpha chain protein [Roseovarius sp.
            TM1035]
 gi|149144232|gb|EDM32263.1| putative dna polymerase iii alpha chain protein [Roseovarius sp.
            TM1035]
          Length = 124

 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     G  + +A +V+ +Q+  T +G  + +VT  +         +
Sbjct: 16   AAALPEVAPGRRVTVAGLVLVRQRPGTARG--VVFVTLEDETGTINVVIW 63


>gi|328479974|gb|EGF49012.1| DNA polymerase III PolC [Lactobacillus rhamnosus MTCC 5462]
          Length = 108

 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 6/107 (5%)

Query: 802 IKKFCQDARQFNIQIMPPSVNTPC-VDFKVGDNRIYY-SLAAIKGVGTTTARHIMEASAD 859
           + +   +  +   +I    V      DF + D+        A+ G+G   A+ I+ A  +
Sbjct: 4   VLEIANECLERGFKIKMIDVTKSDSHDFLIQDDHTILAPFRAVPGLGDNVAKQIVAAREE 63

Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQSL 905
           KPF S ED  +R    K+++ +++ +     LD     +++ L   L
Sbjct: 64  KPFLSKEDLANR---GKVSKTLIDYMTTNHVLDDLPDENQLSLFDGL 107


>gi|197118692|ref|YP_002139119.1| metal-dependent phosphoesterase [Geobacter bemidjiensis Bem]
 gi|197088052|gb|ACH39323.1| metal-dependent phosphoesterase, PHP family [Geobacter bemidjiensis
           Bem]
          Length = 285

 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 2/94 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+YS  +G  +   ++   A     AIA+ D + +    E      A G++ + 
Sbjct: 5   VDLHLHSTYS--DGVRTPAELVAMAAELGLKAIALADHDTVDGIDEAMAAGSAQGVEVLP 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
             +  +       +   G       P ++ ++  
Sbjct: 63  AIEFSVAFGSYRDVHLLGYLLDHRDPQLLAILKD 96


>gi|254496474|ref|ZP_05109351.1| metal dependent phosphoesterase [Legionella drancourtii LLAP12]
 gi|254354330|gb|EET12988.1| metal dependent phosphoesterase [Legionella drancourtii LLAP12]
          Length = 274

 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L  HS +S  +GALS   +++K    Q   +++TD + +    E  Q A    I+ I 
Sbjct: 4  LHCHSYFS--DGALSPKELIEKAQQQQIDCLSLTDHDTVAGYPELLQAAAFTSIKIIN 59


>gi|120554796|ref|YP_959147.1| phosphotransferase domain-containing protein [Marinobacter
          aquaeolei VT8]
 gi|120324645|gb|ABM18960.1| PHP C-terminal domain protein [Marinobacter aquaeolei VT8]
          Length = 288

 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GALS   ++ +        +A+TD + +         A  +G+  I G 
Sbjct: 13 LHCHSTAS--DGALSPEALVARAVEQGVSHLALTDHDTIAGLEVARSAASGSGLSLINGV 70

Query: 74 QLDIDMQDN 82
          +L    + +
Sbjct: 71 ELSCVWRSH 79


>gi|90021363|ref|YP_527190.1| hypothetical protein Sde_1718 [Saccharophagus degradans 2-40]
 gi|89950963|gb|ABD80978.1| PHP-like protein [Saccharophagus degradans 2-40]
          Length = 278

 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L  HS YS  +G LS N+++ +  A     +A+TD +         + A   GI  I 
Sbjct: 7  LHCHSFYS--DGILSPNDLVSRAKAHNVSYLALTDHDTTQGIAVAQKAAKDEGIDLIP 62


>gi|308235628|ref|ZP_07666365.1| PHP domain protein [Gardnerella vaginalis ATCC 14018]
 gi|311114376|ref|YP_003985597.1| PHP domain-containing protein [Gardnerella vaginalis ATCC 14019]
 gi|310945870|gb|ADP38574.1| PHP domain protein [Gardnerella vaginalis ATCC 14019]
          Length = 295

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+ YS  +G  S  +++++        +AITD +      +F + A  A    I G 
Sbjct: 25 LHCHTFYS--DGTKSPEDLVNEAKTIGLKGVAITDHDTTAGWSDFKEAANIADFPVIFGS 82


>gi|239908604|ref|YP_002955346.1| PHP domain protein [Desulfovibrio magneticus RS-1]
 gi|239798471|dbj|BAH77460.1| PHP domain protein [Desulfovibrio magneticus RS-1]
          Length = 300

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +G  +   ++   A+    A+AITD + L    E        G++ I G 
Sbjct: 6  LHTHTTAS--DGTATPAELVAMAASKGLAAVAITDHDTLAGLPEARAAGAEHGVEVIAGV 63

Query: 74 QLDIDMQ 80
          +L +  +
Sbjct: 64 ELSVADE 70


>gi|86741555|ref|YP_481955.1| phosphoesterase PHP-like protein [Frankia sp. CcI3]
 gi|86568417|gb|ABD12226.1| Phosphoesterase PHP-like [Frankia sp. CcI3]
          Length = 59

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 32 ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
          +L ++   Q PA+AITD   ++ A +F ++A AAG++PIIGC+  +  +  
Sbjct: 1  MLKEVFRQQMPAVAITDHGYMYGAYDFHKQATAAGVKPIIGCEAYVAPESR 51


>gi|269793135|ref|YP_003318039.1| PHP domain-containing protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100770|gb|ACZ19757.1| PHP domain protein [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 274

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 2/93 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS++S  +G L+ + ++          +A+TD + +    EF     + GI+ I 
Sbjct: 4   VDLHLHSTFS--DGTLTPHELVRLGRRLGLSVMALTDHDTMEGNEEFLAACASQGIKGIP 61

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
           G ++  +    L +     +P   +   ++ + 
Sbjct: 62  GVEVSGEAPYTLHILGYRVSPTGPLSDALVWIR 94


>gi|220905008|ref|YP_002480320.1| PHP domain protein [Desulfovibrio desulfuricans subsp.
          desulfuricans str. ATCC 27774]
 gi|219869307|gb|ACL49642.1| PHP domain protein [Desulfovibrio desulfuricans subsp.
          desulfuricans str. ATCC 27774]
          Length = 286

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  H+  S  +G  S   ++ K A     A+A+TD + L    E +      G++ I 
Sbjct: 4  VDLHTHTRAS--DGTDSPAQLMAKAAEAGLKAVAVTDHDTLAGLDEAAAAGRELGVELIR 61

Query: 72 GC 73
          GC
Sbjct: 62 GC 63


>gi|145219306|ref|YP_001130015.1| phosphotransferase domain-containing protein [Prosthecochloris
          vibrioformis DSM 265]
 gi|145205470|gb|ABP36513.1| PHP C-terminal domain protein [Chlorobium phaeovibrioides DSM
          265]
          Length = 286

 Score = 65.8 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G  S   I++K AA    AI+ITD +++    +    A   GI+ I G 
Sbjct: 18 LHIHTKCS--DGLFSPEEIVEKAAAAGLKAISITDHDSVAGIDKAKPSAIEKGIELITGA 75

Query: 74 QLDIDMQ 80
          ++    +
Sbjct: 76 EMSSAYK 82


>gi|46190609|ref|ZP_00121259.2| COG0613: Predicted metal-dependent phosphoesterases (PHP family)
           [Bifidobacterium longum DJO10A]
          Length = 289

 Score = 65.8 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+++S  +G  +   + ++  A     +AI+D +      E    A   G+ P++   
Sbjct: 13  HCHTAFS--DGTETPATLAEQSKALGLKGVAISDHDTTAGWPEAEAAAHRVGL-PLLRGT 69

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGY----QRLIELVSRMY 120
                 +N+ +   G    PT   I  L  +T        QR++EL+SR Y
Sbjct: 70  EITATDENVSVHMLGYQYDPTNQHITDLFANTRAARLQRTQRMVELLSRDY 120


>gi|325274082|ref|ZP_08140225.1| phosphotransferase domain-containing protein [Pseudomonas sp.
          TJI-51]
 gi|324100782|gb|EGB98485.1| phosphotransferase domain-containing protein [Pseudomonas sp.
          TJI-51]
          Length = 285

 Score = 65.8 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 2/88 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +GALS   ++ +        +A+TD + L    E        G++ + 
Sbjct: 3  VDLHCHSTAS--DGALSPTALVARAHEHGVQTLALTDHDTLEGLPEARLACVERGMRWVS 60

Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
          G +L                P    P +
Sbjct: 61 GVELSCTWGGATIHVLGYDFPLDAPPLL 88


>gi|23464715|ref|NP_695318.1| hypothetical protein BL0089 [Bifidobacterium longum NCC2705]
 gi|227546824|ref|ZP_03976873.1| PHP family metal-dependent phosphoesterase [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|312132410|ref|YP_003999749.1| metal-dependent phosphoesterse [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|23325281|gb|AAN23954.1| conserved hypothetical protein with phosphoesterase domain
           [Bifidobacterium longum NCC2705]
 gi|227212786|gb|EEI80667.1| PHP family metal-dependent phosphoesterase [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|311772786|gb|ADQ02274.1| Putative metal-dependent phosphoesterse [Bifidobacterium longum
           subsp. longum BBMN68]
          Length = 297

 Score = 65.8 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+++S  +G  +   + ++  A     +AI+D +      E    A   G+ P++   
Sbjct: 21  HCHTAFS--DGTETPATLAEQSKALGLKGVAISDHDTTAGWPEAEAAAHRVGL-PLLRGT 77

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGY----QRLIELVSRMY 120
                 +N+ +   G    PT   I  L  +T        QR++EL+SR Y
Sbjct: 78  EITATDENVSVHMLGYQYDPTNQHITDLFANTRAARLQRTQRMVELLSRDY 128


>gi|189438970|ref|YP_001954051.1| putative metal-dependent phosphoesterse [Bifidobacterium longum
           DJO10A]
 gi|239620802|ref|ZP_04663833.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|322689585|ref|YP_004209319.1| hypothetical protein BLIF_1402 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|189427405|gb|ACD97553.1| Putative metal-dependent phosphoesterse [Bifidobacterium longum
           DJO10A]
 gi|239516378|gb|EEQ56245.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|291516155|emb|CBK69771.1| Predicted metal-dependent phosphoesterases (PHP family)
           [Bifidobacterium longum subsp. longum F8]
 gi|320460921|dbj|BAJ71541.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 297

 Score = 65.8 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+++S  +G  +   + ++  A     +AI+D +      E    A   G+ P++   
Sbjct: 21  HCHTAFS--DGTETPATLAEQSKALGLKGVAISDHDTTAGWPEAEAAAHRVGL-PLLRGT 77

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGY----QRLIELVSRMY 120
                 +N+ +   G    PT   I  L  +T        QR++EL+SR Y
Sbjct: 78  EITATDENVSVHMLGYQYDPTNQHITDLFANTRAARLQRTQRMVELLSRDY 128


>gi|254421521|ref|ZP_05035239.1| hypothetical protein S7335_1671 [Synechococcus sp. PCC 7335]
 gi|196189010|gb|EDX83974.1| hypothetical protein S7335_1671 [Synechococcus sp. PCC 7335]
          Length = 278

 Score = 65.8 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           L  H++ S  +G+L+   +++  A     A+AITD + +   +E ++ A    ++ + 
Sbjct: 3  ELHSHTTCS--DGSLTPTELVNFAAEQGVKALAITDHDTMAGWVEATEAARPFDLEIVP 59


>gi|104782900|ref|YP_609398.1| PHP family phosphoesterase [Pseudomonas entomophila L48]
 gi|95111887|emb|CAK16611.1| putative phosphoesterase (PHP family) [Pseudomonas entomophila L48]
          Length = 286

 Score = 65.8 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 2/97 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +GALS   ++ +        +++TD + L    E  Q     G+Q + 
Sbjct: 3   VDLHCHSTAS--DGALSPTALVARAHEHGVRTLSLTDHDTLEGLPEARQACAEQGMQWVS 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           G +L                P    P +  + +   G
Sbjct: 61  GVELSCTWGGATIHVLGYDFPLDAPPLLEAIDNLHRG 97


>gi|194430795|ref|ZP_03063190.1| PHP domain protein [Escherichia coli B171]
 gi|194411161|gb|EDX27588.1| PHP domain protein [Escherichia coli B171]
          Length = 281

 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 49/157 (31%), Gaps = 28/157 (17%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +G  S   ++     +   A+A+TD +      E    A    +  + 
Sbjct: 2   VDLHTHSTAS--DGTFSPKELVILAKKEGLQALALTDHDTTQGLKEAYLTAKEVDLPFLC 59

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL------VSTAEGYQRLIELVSRMYLLDQG 125
           G ++ I  +        G    P +P I                + + +L          
Sbjct: 60  GVEISIKFEGPGHFHLLGYFLQPEIPEIQSTLEILQKARDTRNQKMIEKLQ--------- 110

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
           +  + I L  L+EI             G I R    N
Sbjct: 111 QAGIDITLEELEEIA-----------QGEIGRPHIAN 136


>gi|323701912|ref|ZP_08113582.1| PHP domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323533216|gb|EGB23085.1| PHP domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 284

 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H++ S  +G+     I+ K       AIA++D + +    E  + A    I+ + G 
Sbjct: 5  LHIHTTAS--DGSDRPEEIVRKALRLGLGAIAVSDHDTMAGVTEAQRAAKDFKIEVLPGI 62

Query: 74 QLDIDMQDN 82
          +++   Q  
Sbjct: 63 EINTYFQGR 71


>gi|303269800|ref|ZP_07355548.1| DNA polymerase III DnaE [Streptococcus pneumoniae BS458]
 gi|302640660|gb|EFL71059.1| DNA polymerase III DnaE [Streptococcus pneumoniae BS458]
          Length = 55

 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +    
Sbjct: 3  AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKK 55


>gi|257464667|ref|ZP_05629038.1| metal-dependent phosphoesterase [Actinobacillus minor 202]
 gi|257450327|gb|EEV24370.1| metal-dependent phosphoesterase [Actinobacillus minor 202]
          Length = 273

 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +G LS   ++ +        +AITD + +    E  + A    IQ I G 
Sbjct: 5  LHTHTTAS--DGLLSPTELVLRAVEQGVEMLAITDHDTVAGIAEAKKAAENQPIQLISGV 62

Query: 74 QLDIDMQDN 82
          ++ I  QD 
Sbjct: 63 EVSIVWQDK 71


>gi|167748097|ref|ZP_02420224.1| hypothetical protein ANACAC_02841 [Anaerostipes caccae DSM 14662]
 gi|167652089|gb|EDR96218.1| hypothetical protein ANACAC_02841 [Anaerostipes caccae DSM 14662]
          Length = 304

 Score = 65.4 bits (158), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS YS  +G      ++ K        +A+TD N++ +  E  + A   GI  I G 
Sbjct: 13 LHMHSYYSD-DGEYQPEELVKKCKEKGIQYMAVTDHNSVRAVGEGREAAQKEGIHFISGV 71

Query: 74 QLDIDMQDN 82
          ++D   +D 
Sbjct: 72 EVDCTFKDR 80


>gi|253996062|ref|YP_003048126.1| PHP domain-containing protein [Methylotenera mobilis JLW8]
 gi|253982741|gb|ACT47599.1| PHP domain protein [Methylotenera mobilis JLW8]
          Length = 289

 Score = 65.4 bits (158), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 66/176 (37%), Gaps = 10/176 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++   A      +A+TD +++    E  Q A   GIQ I G 
Sbjct: 9   LHSHSNIS--DGLLSPTELVAHAAQHGVSVLALTDHDDISGLSEARQAAALHGIQLINGV 66

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC- 132
           ++ +  +                     L +  +G       + R   +  G +   I  
Sbjct: 67  EISVTWKKRTLHVVGLNVDVENEALKTGLAAVRQGR------LERAKQMAAGLEKSGILG 120

Query: 133 -LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              W      + ++     +   ++R +  ++  V +K L+  K  F D  +++L+
Sbjct: 121 SFEWASAYAGQSILTRMHFARFLVERQYAKDTKAVFKKYLVKGKPGFVDHQWMDLE 176


>gi|330839224|ref|YP_004413804.1| PHP domain protein [Selenomonas sputigena ATCC 35185]
 gi|329746988|gb|AEC00345.1| PHP domain protein [Selenomonas sputigena ATCC 35185]
          Length = 276

 Score = 65.0 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQP 69
          L  H+SYS  +G ++   ++          IAITD + +       ++    A   GI P
Sbjct: 5  LHTHTSYS--DGKMTPEELVAAAKEAGLRYIAITDHDTVDGVTHLYEEGLLPAKGIGIIP 62

Query: 70 IIGCQLDIDMQD 81
           I      + ++
Sbjct: 63 GIEFSAHHEKRE 74


>gi|237733531|ref|ZP_04564012.1| phosphotransferase [Mollicutes bacterium D7]
 gi|229383364|gb|EEO33455.1| phosphotransferase [Coprobacillus sp. D7]
          Length = 274

 Score = 65.0 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +  L VH++YS  +G  S+   +          IAITD + +F   E  +     G++ I
Sbjct: 3  YADLHVHTAYS--DGIHSIEETIKLAKEKGIKVIAITDHDTVFHFEEVQKVCRQNGLETI 60

Query: 71 IGCQLDIDMQDNLKMTN 87
           G ++     D  K  +
Sbjct: 61 RGVEMSCYDYDVHKKVH 77


>gi|302386094|ref|YP_003821916.1| PHP domain protein [Clostridium saccharolyticum WM1]
 gi|302196722|gb|ADL04293.1| PHP domain protein [Clostridium saccharolyticum WM1]
          Length = 284

 Score = 65.0 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 89/260 (34%), Gaps = 53/260 (20%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV L VHS+ S  +G L+ + ++   A +   AIA+TD + +    E    A    I+ I
Sbjct: 3   FVDLHVHSNAS--DGTLTPSQVVALAAENNLGAIALTDHDTIDGLSEAQAAASGLPIEII 60

Query: 71  IGCQLDIDMQDN--------LKMTNQGKTPFPTVPSIVLLVSTAEGYQ------------ 110
            G +L    Q          +  T++           +      E  +            
Sbjct: 61  PGIELSCVYQGEEIHILGLYVDPTDKAFVSETNTLKEIRKKRNEEMIRRFQNAGISITFD 120

Query: 111 -----RLIELVSRMY----LLDQGK-------------QSVRICLSWLQEIGTEGLIMLT 148
                    +++R +    LL++G               +   C    +      + +LT
Sbjct: 121 EVMAGNPDTVITRAHFARVLLEKGYVKSMDQAFKKYLDYNGPYCPRKEKISPGHAIKILT 180

Query: 149 GGSSGPI----DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLA 204
              + P+     +    ++    E+ +   K+L    L V    H   ++Y   ++ +LA
Sbjct: 181 DCKASPVLAHPYQYHLGDN--KTEELVRYLKELGLHGLEV---YHSSNNQYESGKLKKLA 235

Query: 205 YTHELPLVATNNSLFLSEED 224
             ++L     ++    ++ D
Sbjct: 236 GKYDLFPTGGSDFHGSNKPD 255


>gi|167754655|ref|ZP_02426782.1| hypothetical protein CLORAM_00158 [Clostridium ramosum DSM 1402]
 gi|167705487|gb|EDS20066.1| hypothetical protein CLORAM_00158 [Clostridium ramosum DSM 1402]
          Length = 274

 Score = 65.0 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +  L VH++YS  +G  S+   +          IAITD + +F   E  +     G++ I
Sbjct: 3  YADLHVHTAYS--DGIHSIEETIKLAKEKGIKVIAITDHDTVFHFEEVQKVCRQNGLETI 60

Query: 71 IGCQLDIDMQDNLKMTN 87
           G ++     D  K  +
Sbjct: 61 RGVEMSCYDYDVHKKVH 77


>gi|222529901|ref|YP_002573783.1| PHP domain-containing protein [Caldicellulosiruptor bescii DSM
          6725]
 gi|222456748|gb|ACM61010.1| PHP domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 279

 Score = 65.0 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L VH+++S  +G L+   ++         AIAITD +     +    +    GI+ + 
Sbjct: 2  VDLHVHTTFS--DGTLTPQEVVKLAKEKGLFAIAITDHDTTDGVIHAIDEGNRLGIKVVS 59

Query: 72 GCQLDIDMQ 80
          G ++  D +
Sbjct: 60 GVEISADFE 68


>gi|302389766|ref|YP_003825587.1| PHP domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302200394|gb|ADL07964.1| PHP domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 268

 Score = 65.0 bits (157), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          V L +H+++S  +G L+   ++DK  +    AIAITD + +   +   ++A    +
Sbjct: 3  VDLHLHTTFS--DGTLTPEQVVDKAFSLNLRAIAITDHDTVDGIVPAVERAKKYPM 56


>gi|240949250|ref|ZP_04753594.1| metal-dependent phosphoesterase [Actinobacillus minor NM305]
 gi|240296366|gb|EER47010.1| metal-dependent phosphoesterase [Actinobacillus minor NM305]
          Length = 273

 Score = 65.0 bits (157), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +G LS   ++ +        +AITD + +    E  + A    I+ I G 
Sbjct: 5  LHTHTTAS--DGLLSPTELVLRAVEQGVEMLAITDHDTVAGIAEAKKAAENQSIRLISGV 62

Query: 74 QLDIDMQDN 82
          ++ I  QD 
Sbjct: 63 EISIVWQDK 71


>gi|322691546|ref|YP_004221116.1| hypothetical protein BLLJ_1357 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456402|dbj|BAJ67024.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 297

 Score = 64.6 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+++S  +G  +   + ++  A     +AI+D +      E    A   G+ P++   
Sbjct: 21  HCHTAFS--DGTETPATLAEQSKALGLKGVAISDHDTTAGWPEAEAAAHRVGL-PLLRGT 77

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGY----QRLIELVSRMY 120
                 +N+ +   G    PT   I  L  +T        QR++EL+SR Y
Sbjct: 78  EITATDENVSVHMLGYQYDPTNQHIADLFANTRAARLQRTQRMVELLSRDY 128


>gi|330966748|gb|EGH67008.1| PHP domain-containing protein [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 287

 Score = 64.6 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 2/161 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +GALS   ++ +        +++TD + L    E    A + G+Q + 
Sbjct: 3   VDLHCHSTAS--DGALSPTALVARAHEYGVRVLSLTDHDTLEGLEEARTAAHSLGMQLVN 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L                          +    EG     E +SR   +     ++  
Sbjct: 61  GVELSCTWGGATIHVLGYGFDTQAPALTEAIARLHEGRWLRAEEISRKLAIKGMPGALEG 120

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             +  QE+G  G        +  + RA F      A ++ L
Sbjct: 121 ARAIQQELGDSGNAPARPHFADFMVRAGFVKDRAEAFRKWL 161


>gi|317154883|ref|YP_004122931.1| PHP domain-containing protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316945134|gb|ADU64185.1| PHP domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 286

 Score = 64.6 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++         AIA+TD + L    E  +     GI+ I GC
Sbjct: 5  LHTHSTAS--DGTLSPTELVRLAREIGLDAIALTDHDTLGGLDEAVEAGKTCGIEVIRGC 62


>gi|227495221|ref|ZP_03925537.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
 gi|226831673|gb|EEH64056.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
          Length = 80

 Score = 64.6 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 825 CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            V+  +    +      +KG+   +A+ +++A  ++PF SL +  SR    +   R+L  
Sbjct: 1   MVEETLSGKAVRLGFQQVKGLSRESAKRLVQARLEQPFISLSNVASRAYLSEAELRLL-- 58

Query: 885 LVFAGALDCFGYSRMQLLQS 904
              AGA +  G SR +    
Sbjct: 59  -GLAGAFESLGVSRREAAWQ 77


>gi|328947110|ref|YP_004364447.1| PHP domain protein [Treponema succinifaciens DSM 2489]
 gi|328447434|gb|AEB13150.1| PHP domain protein [Treponema succinifaciens DSM 2489]
          Length = 293

 Score = 64.6 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  + + ++   A  +  AIA+TD +N+   LE  +KA   GI+ I G 
Sbjct: 4  LHTHSTAS--DGTCTPSQLISYAAEKKISAIALTDHDNIDGILEAQEKAKELGIEFIPGI 61

Query: 74 QLDIDMQDN 82
          ++ I+    
Sbjct: 62 EISIEWPSG 70


>gi|317481617|ref|ZP_07940653.1| PHP domain-containing protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916977|gb|EFV38363.1| PHP domain-containing protein [Bifidobacterium sp. 12_1_47BFAA]
          Length = 297

 Score = 64.6 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+++S  +G  +   + ++  A     +AI+D +      E    A   G+ P++   
Sbjct: 21  HCHTAFS--DGTETPATLAEQSKALGLKGVAISDHDTTAGWPEAEAAAHRVGL-PLLRGT 77

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGY----QRLIELVSRMY 120
                 +N+ +   G    PT   I  L  +T        QR++EL+SR Y
Sbjct: 78  EITATDENVSVHMLGYQYDPTNQHIADLFANTRAARLQRTQRMVELLSRDY 128


>gi|328462503|gb|EGF34510.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus MTCC
           5462]
          Length = 66

 Score = 64.6 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%)

Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
           A       +      P    L + +  LEGL RH STHAAGIV+ + PL+  V +  
Sbjct: 10  AYEQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQP 66


>gi|330876949|gb|EGH11098.1| PHP domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 287

 Score = 64.6 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 2/161 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +GALS   ++ +        +++TD + L    E    A + G+Q + 
Sbjct: 3   VDLHCHSTAS--DGALSPTALVARAHEYGVRVLSLTDHDTLEGLEEARTAAHSLGMQLVN 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L                          +    EG     E +SR   +     ++  
Sbjct: 61  GVELSCTWGGATIHVLGYGFDTQAPALTEAIARLHEGRWLRAEEISRKLAIKGMPGALEG 120

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             +  QE+G  G        +  + RA F      A ++ L
Sbjct: 121 ARAIQQELGDSGNAPARPHFADFMVRAGFVKDRAEAFRKWL 161


>gi|260438054|ref|ZP_05791870.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Butyrivibrio crossotus DSM 2876]
 gi|292809533|gb|EFF68738.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Butyrivibrio crossotus DSM 2876]
          Length = 280

 Score = 64.6 bits (156), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VHS+YS  +G  S   ++ +   +   A A+TD +      E       AGI+ I G 
Sbjct: 6  LHVHSTYS--DGTFSPAELVKEAVKNGISAFALTDHDTTDGIDEAIDAGGKAGIEVIPGI 63

Query: 74 QLDIDMQDN 82
          ++    +D 
Sbjct: 64 EISTSYKDK 72


>gi|330960479|gb|EGH60739.1| phosphoesterase PHP [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 287

 Score = 64.6 bits (156), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 2/132 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + 
Sbjct: 3   VDLHCHSTAS--DGALSPTALVARAHENGVRVLSLTDHDTLEGLEEARAAAHSLGMQLVN 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L                          +    EG     E +SR   +     ++  
Sbjct: 61  GVELSCTWGGATIHVLGYGFDTQAPALTAAIARLHEGRWLRAEEISRKLAIKGMPGALEG 120

Query: 132 CLSWLQEIGTEG 143
             +  QE+G  G
Sbjct: 121 ARAIQQELGDSG 132


>gi|126729294|ref|ZP_01745108.1| DNA polymerase III, alpha subunit, putative [Sagittula stellata E-37]
 gi|126710284|gb|EBA09336.1| DNA polymerase III, alpha subunit, putative [Sagittula stellata E-37]
          Length = 122

 Score = 64.6 bits (156), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                         G  + +A +V+ +Q+  T KG  + +VT  +         +
Sbjct: 8    SATPARLLREVPNGARVTVAGLVILRQRPGTAKG--VIFVTLEDETGVINIVVW 59


>gi|170722952|ref|YP_001750640.1| phosphotransferase domain-containing protein [Pseudomonas putida
           W619]
 gi|169760955|gb|ACA74271.1| PHP domain protein [Pseudomonas putida W619]
          Length = 286

 Score = 64.6 bits (156), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 2/132 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +GAL+   ++ +        +A+TD + L    E  Q     G++ + 
Sbjct: 3   VDLHCHSTAS--DGALAPAVLVARAQEHGVQTLALTDHDTLEGLPEARQACVERGMRWVS 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L                P    P +  + S   G     E + +       + ++  
Sbjct: 61  GVELSCTWGGATIHVLGYDFPLEAPPLLEAIESLHRGRWLRAEEIDKRLAAKGMRGTLEG 120

Query: 132 CLSWLQEIGTEG 143
             +  QE+G  G
Sbjct: 121 ARAVQQELGDSG 132


>gi|239626665|ref|ZP_04669696.1| PHP domain-containing protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516811|gb|EEQ56677.1| PHP domain-containing protein [Clostridiales bacterium 1_7_47FAA]
          Length = 287

 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 10/112 (8%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +  +V L VHS+ S  +G  +   ++   A     AIA+TD +      E      A G+
Sbjct: 8   TMDYVDLHVHSNAS--DGTCTPAEVVGLAAQADLRAIALTDHDTTAGIPEALLAGAACGM 65

Query: 68  QPIIGCQLDIDMQDN--------LKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           + I G ++    + +        +   N           +       E ++R
Sbjct: 66  EVIPGIEVSSSYKGHEIHILGLFVTAGNPALEAVLKQFRLRRDQRNEEMFRR 117


>gi|226313604|ref|YP_002773498.1| hypothetical protein BBR47_40170 [Brevibacillus brevis NBRC
          100599]
 gi|226096552|dbj|BAH44994.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 281

 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+  S  +G       +         A+AITD + +    E  + A A G++ I G 
Sbjct: 7  LHTHTKAS--DGTCEPAENVRLAKEAGLAALAITDHDTVAGIPEAMEAARALGVEIIPGV 64


>gi|260433217|ref|ZP_05787188.1| error-prone DNA polymerase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417045|gb|EEX10304.1| error-prone DNA polymerase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 143

 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 +       G  + +A +V+ +Q+  T KG  + +VT  +         +
Sbjct: 35   ACLPADRLEEPPEGARVTVAGLVILRQRPGTAKG--VIFVTLEDETGIVNVIVW 86


>gi|293389959|ref|ZP_06634293.1| fumarate hydratase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950493|gb|EFE00612.1| fumarate hydratase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 278

 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +        +A+TD + +   LE  Q+A  +GI+ I G 
Sbjct: 6  LHCHSTAS--DGVLSPTEVVLRAHEKGVNVLALTDHDTVAGVLEARQQAEKSGIRLINGV 63

Query: 74 QLDIDMQDN 82
          ++    ++ 
Sbjct: 64 EISTVWENR 72


>gi|311743778|ref|ZP_07717584.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
           [Aeromicrobium marinum DSM 15272]
 gi|311312908|gb|EFQ82819.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
           [Aeromicrobium marinum DSM 15272]
          Length = 274

 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 82/257 (31%), Gaps = 26/257 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  S   +++  AA     +A+TD ++     E    A  AGI+ + G 
Sbjct: 5   LHTHSNRS--DGTDSPTELVEHAAAAGLSVVALTDHDSTAGWDEAQAAADRAGIRLVPGI 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++   ++                  ++           L EL     L  +  +   I  
Sbjct: 63  EVSCRLEH-------------QSIHLLGYAFDPHDEALLAEL--DRVLAGRDGRLPGI-- 105

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-VNLQRHRGY 192
             +  +   G+ +     +     A       VA+  +   + +  DR          G 
Sbjct: 106 --IGRLNDLGIEITQADVAAVSGHAMASGRPHVADALVE--RGVVADRSEAFERFLKPGR 161

Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM--AVAHSTVVSQKDRPRVTP 250
             Y +     LA   EL + A   ++        +  VL   A+A               
Sbjct: 162 PAYVDRYAAPLATAIELIVAAGGTTVLAHPWSRGSDRVLTADAIAGLVPHGLAGIEVDHN 221

Query: 251 DHYLKNRSEMVSIFSDL 267
           DH    R  + +I +DL
Sbjct: 222 DHDPAAREALRTIATDL 238


>gi|312876459|ref|ZP_07736443.1| PHP domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796817|gb|EFR13162.1| PHP domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 279

 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH+++S  +G L+   ++         AIAITD +     +    +    GI+ + G 
Sbjct: 4  LHVHTTFS--DGTLTPQEVVKLAKEKGLFAIAITDHDTTDGVIHAIDEGNRLGIKVVSGV 61

Query: 74 QLDIDMQ 80
          ++  D +
Sbjct: 62 EISADFE 68


>gi|312792991|ref|YP_004025914.1| PHP domain-containing protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312180131|gb|ADQ40301.1| PHP domain protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 279

 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L VH+++S  +G L+   ++         AIAITD +     +    +    GI+ + 
Sbjct: 2  VDLHVHTTFS--DGTLTPQEVIKLAKEKGLFAIAITDHDTTDGVIHAIDEGNRLGIKVVS 59

Query: 72 GCQLDIDMQ 80
          G ++  D +
Sbjct: 60 GVEISADFE 68


>gi|291614093|ref|YP_003524250.1| PHP domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291584205|gb|ADE11863.1| PHP domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 286

 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 4/115 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L+   ++ + AA +   +A+TD + +    E  Q A A GI+ I G 
Sbjct: 6   LHCHSNVS--DGTLTPTELVARAAAREVKVLALTDHDEVDGLTEAEQAATAHGIEFINGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST-AEGYQRLIELVSRMYLLDQGKQ 127
           ++ +  + +  +   G    P  P++V  +     G +   EL+S          
Sbjct: 64  EISVSWRSHT-IHIVGLHIDPQYPALVDGLRAIRSGRKHRAELMSESLARSGIGG 117


>gi|317133650|ref|YP_004092964.1| PHP domain protein [Ethanoligenens harbinense YUAN-3]
 gi|315471629|gb|ADU28233.1| PHP domain protein [Ethanoligenens harbinense YUAN-3]
          Length = 295

 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+  S  +G++ +  +           +A+TD +++       + A   G++ I G 
Sbjct: 5   LHCHTRVS--DGSMRVEELAAYAVRIGLDCLAVTDHDSMDGVARAQKAAAGTGLRVIPGL 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           ++        K  +      P    ++ L 
Sbjct: 63  EISAYDHVRGKKVHLLCYAPPKPDELLALC 92


>gi|167035001|ref|YP_001670232.1| phosphotransferase domain-containing protein [Pseudomonas putida
          GB-1]
 gi|166861489|gb|ABY99896.1| PHP domain protein [Pseudomonas putida GB-1]
          Length = 286

 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 2/88 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +GALS   ++ +        +A+TD + +    E  Q     G++ + 
Sbjct: 3  VDLHCHSTAS--DGALSPTVLVARAHEHGVQTLALTDHDTIEGLPEARQACVDLGMRWVS 60

Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
          G +L                P    P +
Sbjct: 61 GVELSCTWGGATIHVLGYDFPLDAPPLL 88


>gi|297836026|ref|XP_002885895.1| PHP domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297331735|gb|EFH62154.1| PHP domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 434

 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  HS+ S  +G LS + ++++   +    +++TD + +    E  +     GI+ I G
Sbjct: 70  ELHSHSNRS--DGFLSPSKLVERAHNNGVKVLSLTDHDTMAGIPEAVEAGRRFGIKIIPG 127

Query: 73  CQLDIDMQDNLKMTNQ 88
            ++          + +
Sbjct: 128 IEISTLFGSRDSGSEE 143


>gi|221633699|ref|YP_002522925.1| putative PHP domain [Thermomicrobium roseum DSM 5159]
 gi|221155453|gb|ACM04580.1| putative PHP domain [Thermomicrobium roseum DSM 5159]
          Length = 285

 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 8/171 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++ S  +G LS   +++  A      + ITD + +         A    ++ + G 
Sbjct: 6   LHTHTTAS--DGILSPEELVELAAVRGIEVLGITDHDTVAGLPAAQSAAAHRSVKIVPGI 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ-RLIELVSRMYLLDQGKQSVRIC 132
           +L   ++                     L S A   + R   +V R+  L      + + 
Sbjct: 64  ELSTAVETGEVHILGYFIDPADPVLQAHLASLATARRERAQRMVDRLRQLG-----IPVT 118

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
           +  L+ I   G I     +   + R F  +  +  E+ L   +  +  R Y
Sbjct: 119 MEDLEAIAQGGTITRAHAARLLVARGFAGSIDEAFERFLGRNRPAYVPRTY 169


>gi|295394595|ref|ZP_06804814.1| PHP domain protein [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972488|gb|EFG48344.1| PHP domain protein [Brevibacterium mcbrellneri ATCC 49030]
          Length = 279

 Score = 63.8 bits (154), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS++S  +G  +   +L + +      + +TD + +       Q A   G+Q + G 
Sbjct: 4  LHTHSAFS--DGTQTPEELLAQASDAGVTTLGLTDHDTVAGWSPAVQAARTHGVQLVRGM 61

Query: 74 QLDIDMQ 80
          ++    Q
Sbjct: 62 EVSCRFQ 68


>gi|213691666|ref|YP_002322252.1| PHP C-terminal domain protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523127|gb|ACJ51874.1| PHP C-terminal domain protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457757|dbj|BAJ68378.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 297

 Score = 63.8 bits (154), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+ +S  +G  +   + ++  A     +AI+D +      E    A   G+ P++   
Sbjct: 21  HCHTVFS--DGTETPVTLAEQSKALGLKGVAISDHDTTAGWPEAEAAAHRVGL-PLLRGT 77

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGY----QRLIELVSRMY 120
                 +N+ +   G    PT   I  L   T        QR++EL+SR Y
Sbjct: 78  EITATDENVSVHMLGYQYDPTNQHITDLFADTRAARLQRTQRMVELLSRDY 128


>gi|260914029|ref|ZP_05920502.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Pasteurella dagmatis ATCC 43325]
 gi|260631662|gb|EEX49840.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Pasteurella dagmatis ATCC 43325]
          Length = 277

 Score = 63.8 bits (154), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS  +++++ A      +A+TD + +    E  Q A   GIQ I G 
Sbjct: 7  LHCHSTAS--DGVLSPTDVVNRAAEKGVNVLALTDHDTVSGLAEAKQAANQQGIQLINGV 64

Query: 74 QLDIDMQDN 82
          ++    ++ 
Sbjct: 65 EISTYWENR 73


>gi|73668928|ref|YP_304943.1| hypothetical protein Mbar_A1404 [Methanosarcina barkeri str.
           Fusaro]
 gi|72396090|gb|AAZ70363.1| hypothetical protein Mbar_A1404 [Methanosarcina barkeri str.
           Fusaro]
          Length = 215

 Score = 63.8 bits (154), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 68/209 (32%), Gaps = 49/209 (23%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS YS  +G L    I+          IAITD N +   L+  +       + I+G 
Sbjct: 7   LHIHSKYSS-DGVLDPKKIVKTAIKRNLKGIAITDHNTIKGGLKAIEYETK-DFKVIVGS 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++  D  + + +    +     + ++V  +    G                         
Sbjct: 65  EIMTDQGEVIGLFLSEEIKSNNLINVVSEIKAQNG------------------------- 99

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                      I++       + R+      + A   L+   + F  R            
Sbjct: 100 -----------IVIVPHPFDEMRRSALHPKEECA--SLIDCIEGFNSRCIF--------- 137

Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSE 222
           +    + V+ A  H LPLVA +++ F +E
Sbjct: 138 QKYNDKAVEYANKHNLPLVAGSDAHFANE 166


>gi|89894682|ref|YP_518169.1| hypothetical protein DSY1936 [Desulfitobacterium hafniense Y51]
 gi|89334130|dbj|BAE83725.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 286

 Score = 63.8 bits (154), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
          L  H+S S  +G L+   ++ + A     A+ ITD + L       +KA  AG
Sbjct: 13 LHCHTSAS--DGLLTPWELVKQAAELGLKAVGITDHDTLSG----WEKASQAG 59


>gi|126668124|ref|ZP_01739086.1| hypothetical protein MELB17_08661 [Marinobacter sp. ELB17]
 gi|126627394|gb|EAZ98029.1| hypothetical protein MELB17_08661 [Marinobacter sp. ELB17]
          Length = 303

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
          ++SP  + L  HS+ S  +GALS  ++L +        +A+TD + L         A   
Sbjct: 20 QQSPLCIDLHCHSTAS--DGALSPADLLARAHEKGVSHLALTDHDTLNGLRSARLAAQDY 77

Query: 66 GIQPIIGCQLDIDMQDN 82
           I+ I G +L    + +
Sbjct: 78 NIELISGVELSCAWRSH 94


>gi|312127087|ref|YP_003991961.1| PHP domain-containing protein [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311777106|gb|ADQ06592.1| PHP domain protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 279

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH+++S  +G L+   ++         AIAITD +     +    +    G++ + G 
Sbjct: 4  LHVHTTFS--DGTLTPQEVVKLAKEKGLFAIAITDHDTTDGVIHAIDEGNRLGLKVVSGV 61

Query: 74 QLDIDMQ 80
          ++  D +
Sbjct: 62 EISADFE 68


>gi|78186331|ref|YP_374374.1| phosphoesterase PHP-like [Chlorobium luteolum DSM 273]
 gi|78166233|gb|ABB23331.1| Phosphoesterase PHP-like protein [Chlorobium luteolum DSM 273]
          Length = 286

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G  +   I+DK A+    AI+ITD +++    +    A A GI+ I G 
Sbjct: 18 LHIHTKCS--DGIHTPEEIVDKAASAGLSAISITDHDSVAGIDKAKPSASAKGIELIPGV 75

Query: 74 QLDIDMQ 80
          ++    +
Sbjct: 76 EMSSTYK 82


>gi|322419435|ref|YP_004198658.1| PHP domain-containing protein [Geobacter sp. M18]
 gi|320125822|gb|ADW13382.1| PHP domain protein [Geobacter sp. M18]
          Length = 284

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 2/93 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+YS  +G  +   ++         AIA+ D + +    E      A G++ + 
Sbjct: 5   VDLHMHSTYS--DGVRTPTELVAMAKGLGLKAIALADHDTVDGIDEALAAGAAQGVEVLP 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
             +  +       +   G       P + L++ 
Sbjct: 63  ALEFSVAYGSFRDVHLLGYLLDHRDPQLQLILK 95


>gi|219669123|ref|YP_002459558.1| PHP domain protein [Desulfitobacterium hafniense DCB-2]
 gi|219539383|gb|ACL21122.1| PHP domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 286

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
          L  H+S S  +G L+   ++ + A     A+ ITD + L       +KA  AG
Sbjct: 13 LHCHTSAS--DGLLTPWELVKQAAELGLKAVGITDHDTLSG----WEKASQAG 59


>gi|126179543|ref|YP_001047508.1| phosphotransferase domain-containing protein [Methanoculleus
          marisnigri JR1]
 gi|125862337|gb|ABN57526.1| PHP C-terminal domain protein [Methanoculleus marisnigri JR1]
          Length = 221

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
           +HS+YS  +  +    IL +        +AITD + +  +L   +     G+  I G +
Sbjct: 9  HIHSNYS-QDSLMRPGRILKRAKEVGLTGVAITDHDTIRGSLHARKLEKEVGVTVIPGVE 67

Query: 75 LDIDMQD 81
          +  D  D
Sbjct: 68 ILTDSGD 74


>gi|283850997|ref|ZP_06368282.1| PHP domain protein [Desulfovibrio sp. FW1012B]
 gi|283573643|gb|EFC21618.1| PHP domain protein [Desulfovibrio sp. FW1012B]
          Length = 305

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 67/170 (39%), Gaps = 20/170 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G+L  + ++   A +   A+A+TD + L    E        G++ I G 
Sbjct: 6   LHTHSTAS--DGSLFPSQLVALAAQNGLAALALTDHDTLDGLAEARTAGRVHGLEIIAGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           +L +   D              V  + L +    G  RL + +   YL ++     R  L
Sbjct: 64  ELSVADGDR------------GVHILGLFLPDRPG--RLADAL--AYLRERRHNRNRRIL 107

Query: 134 SWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             L+E G       +T  + G + R      + VA   + +FK+ F   L
Sbjct: 108 DKLREQGVPLDYDAVTALARGAVGRPHIA-QALVAMGAVTSFKEAFTRYL 156


>gi|225572724|ref|ZP_03781479.1| hypothetical protein RUMHYD_00913 [Blautia hydrogenotrophica DSM
          10507]
 gi|225039897|gb|EEG50143.1| hypothetical protein RUMHYD_00913 [Blautia hydrogenotrophica DSM
          10507]
          Length = 278

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VHS+YS  +G  +   ++         A A+TD +        ++ A   G++ I G 
Sbjct: 7  LHVHSNYS--DGTYTPQELVRIALEKGLRAFALTDHDTTEGIPLAAEAARGTGLEVIPGI 64

Query: 74 QLDIDMQ 80
          +     Q
Sbjct: 65 EFSTSYQ 71


>gi|258517160|ref|YP_003193382.1| PHP domain-containing protein [Desulfotomaculum acetoxidans DSM
          771]
 gi|257780865|gb|ACV64759.1| PHP domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 264

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H++ S  +G  + ++I+ K        IAITD + +    E  +     GI+ I G 
Sbjct: 14 LHIHTTAS--DGVYTPSDIVQKAYGLGLKTIAITDHDTMSGVKEAVEAGKELGIKVIPGV 71


>gi|78223182|ref|YP_384929.1| PHP-like [Geobacter metallireducens GS-15]
 gi|78194437|gb|ABB32204.1| PHP-like protein [Geobacter metallireducens GS-15]
          Length = 293

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VHS+YS  +G     +++   A     AIAI D + +    E        G++ +   
Sbjct: 7   LHVHSNYS--DGIHPPADLVKMAAERGLVAIAIADHDTVDGIDEALIAGARLGVEVVPAV 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           +L  +      M   G       P +V +
Sbjct: 65  ELSAEHGRYRDMHILGYHLDHRDPRLVDM 93


>gi|254427175|ref|ZP_05040882.1| hypothetical protein ADG881_405 [Alcanivorax sp. DG881]
 gi|196193344|gb|EDX88303.1| hypothetical protein ADG881_405 [Alcanivorax sp. DG881]
          Length = 283

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 3/95 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +GALS  +++ + A      +A+TD + L    E  Q A A G+  I G 
Sbjct: 7   LHSHSLAS--DGALSPTDLVARAADYGVTHLALTDHDTLRGLDEARQAAQARGMTLINGI 64

Query: 74  QLDIDMQDN-LKMTNQGKTPFPTVPSIVLLVSTAE 107
           +L +   +    +               +      
Sbjct: 65  ELSVRHDNREFHVLGLWVDVDDPTLQARVSAQNEA 99


>gi|56750020|ref|YP_170721.1| hypothetical protein syc0011_d [Synechococcus elongatus PCC 6301]
 gi|81300362|ref|YP_400570.1| phosphoesterase PHP-like [Synechococcus elongatus PCC 7942]
 gi|56684979|dbj|BAD78201.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81169243|gb|ABB57583.1| Phosphoesterase PHP-like [Synechococcus elongatus PCC 7942]
          Length = 297

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           L  H++YS  +G+LS   +++   A    A+AITD + L    E    A
Sbjct: 30 ELHTHTTYS--DGSLSPTELVEAAIAAGVTALAITDHDTLGGWTEAIAAA 77


>gi|320353939|ref|YP_004195278.1| PHP domain-containing protein [Desulfobulbus propionicus DSM 2032]
 gi|320122441|gb|ADW17987.1| PHP domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 287

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 78/256 (30%), Gaps = 23/256 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS YS  +G+ +   +++   A+    +A+TD + +    E  +    AG+  + G 
Sbjct: 5   LHTHSVYS--DGSSTPAELIELAVANGISGLALTDHDTVEGVAEVKRLGEQAGLSVLTGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++   ++ +                   L+   +G +R   ++                 
Sbjct: 63  EISTTLRQHTLHILGYGIDADDPQLHRWLLPLQQGRERRNAII----------------- 105

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-FKKLFGDRLYVNLQRHRGY 192
             L ++   G I +T      I R        +A   +       F     + L R++  
Sbjct: 106 --LDKLRGLG-IDITAEEIQEISRCGQTGRPHIARLLVAKGVVDSFEAAFRLYLGRNKPA 162

Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
              R S     A      +          + D E       +    +          P H
Sbjct: 163 WEGRFSYSATEAIDMIHRVGGVAVLAHPGQLDSEMRLQPPLIRELALRGLDGIEIYYPTH 222

Query: 253 YLKNRSEMVSIFSDLP 268
             K   ++ ++ ++L 
Sbjct: 223 TRKTMKKLKTLAAELE 238


>gi|225174594|ref|ZP_03728592.1| PHP domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169721|gb|EEG78517.1| PHP domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 279

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH+  S  +G  +   ++ +       AIAITD + +    E    A    I    G 
Sbjct: 7  LHVHTQAS--DGVYTPREVVARARRLGLDAIAITDHDTVDGIAEALSAAKEQRITVFPGV 64

Query: 74 QLDIDMQDN 82
          +L  +  D 
Sbjct: 65 ELSTEYNDR 73


>gi|302810884|ref|XP_002987132.1| hypothetical protein SELMODRAFT_44729 [Selaginella moellendorffii]
 gi|300145029|gb|EFJ11708.1| hypothetical protein SELMODRAFT_44729 [Selaginella moellendorffii]
          Length = 309

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 45/128 (35%), Gaps = 11/128 (8%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S  +G LS   ++++        +A+TD + +         A + G++ I 
Sbjct: 21  VDLHCHTTCS--DGLLSPPALVERAHKRGVKVLALTDHDTMAGVPAAIAAARSYGMRIIP 78

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++      +     +                  E  +RL       ++ +      R 
Sbjct: 79  GVEISCRYLSSSGEMGE-LVHVLAYYGCCGPAQGLE--ERL------AHIREGRYARARS 129

Query: 132 CLSWLQEI 139
            +  L+++
Sbjct: 130 MVDKLRDL 137


>gi|295100077|emb|CBK89166.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Eubacterium cylindroides T2-87]
          Length = 295

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
          S++ L +H+ YS  +G      ++D         +AI D N + +  E  ++A   G++ 
Sbjct: 3  SYIDLHMHTKYSD-DGQFEPAKLVDMCKEAGVKIMAIADHNTVNAIPEAIKQAQKNGMKY 61

Query: 70 IIGCQLDIDMQD 81
          I   ++D   +D
Sbjct: 62 IPAIEIDCTYKD 73


>gi|148272371|ref|YP_001221932.1| hypothetical protein CMM_1191 [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|147830301|emb|CAN01235.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
          Length = 291

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
          E+ P  + L  HS  S+ +G  +   ++ + AA    A+A+TD ++     + S  A   
Sbjct: 3  EQQPGPIDLHTHS--SVSDGTETPVELVAQAAAQGLSAVALTDHDSTAGWGDASAAALVQ 60

Query: 66 GIQPIIGCQLDIDMQ 80
          GI  + G ++   ++
Sbjct: 61 GITLVPGMEMSTQLE 75


>gi|302788915|ref|XP_002976226.1| hypothetical protein SELMODRAFT_54787 [Selaginella
          moellendorffii]
 gi|300155856|gb|EFJ22486.1| hypothetical protein SELMODRAFT_54787 [Selaginella
          moellendorffii]
          Length = 296

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  H++ S  +G LS   ++++        +A+TD + +         A + G++ I 
Sbjct: 8  VDLHCHTTCS--DGLLSPPALVERAHKRGVKVLALTDHDTMAGVPAAIAAARSYGMRIIP 65

Query: 72 GCQLDI 77
          G ++  
Sbjct: 66 GVEISC 71


>gi|328479969|gb|EGF49010.1| DNA polymerase III PolC [Lactobacillus rhamnosus MTCC 5462]
          Length = 76

 Score = 63.1 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             ++   T  G + L +LVS   +     +  R+  S LQ++  EGL++ +  SSG +  
Sbjct: 3   HAIVFAKTQAGLKNLFKLVSLSNVK-YFYRVPRVPRSQLQKL-REGLLVGSACSSGEVFT 60

Query: 158 AFFFNSSQVAEKRLL 172
           A        A  +  
Sbjct: 61  AMMQKGEAEARAKAA 75


>gi|320161955|ref|YP_004175180.1| DNA polymerase X family protein [Anaerolinea thermophila UNI-1]
 gi|319995809|dbj|BAJ64580.1| DNA polymerase X family protein [Anaerolinea thermophila UNI-1]
          Length = 581

 Score = 63.1 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE 57
            L  HS++S  +GA+S+  ++    A    AIAITD ++    + 
Sbjct: 345 ELHTHSTWS--DGAVSIEEMVRAALARGYHAIAITDHSSYMGIVR 387


>gi|312602647|ref|YP_004022492.1| DNA polymerase III subunit alpha [Burkholderia rhizoxinica HKI 454]
 gi|312169961|emb|CBW76973.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia
           rhizoxinica HKI 454]
          Length = 121

 Score = 63.1 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGT 847
           +  +        +  QDAR+  ++++P  V     D  +  +     +   L+ I+G+  
Sbjct: 50  LNSQPMGFYTPSQLVQDARRHGVKVLPVDVTVSDWDSTLQRHSLEVPMRLGLSLIRGLAE 109

Query: 848 TTARHIMEASA 858
             A  I  A A
Sbjct: 110 DAAARIELARA 120



 Score = 52.7 bits (125), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 24/41 (58%)

Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
           +++   T+G+FQ+ES      L  ++P C  D++  V++ R
Sbjct: 1   MISRADTVGVFQIESRAQMSMLPRLRPRCFYDLVIEVAIVR 41


>gi|323699499|ref|ZP_08111411.1| PHP domain protein [Desulfovibrio sp. ND132]
 gi|323459431|gb|EGB15296.1| PHP domain protein [Desulfovibrio desulfuricans ND132]
          Length = 286

 Score = 63.1 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +G LS   +++        AIA+TD +      E  +     G++ I G 
Sbjct: 5  LHTHTTAS--DGTLSPTELVELAGETGLDAIAVTDHDTFQGVAEAVEAGKRLGVEVIPGA 62

Query: 74 QLDIDMQDNLKMTN 87
          +L ++  +     +
Sbjct: 63 ELSLESPEGAGWIH 76


>gi|78043953|ref|YP_361040.1| phosphotransferase domain-containing protein [Carboxydothermus
          hydrogenoformans Z-2901]
 gi|77996068|gb|ABB14967.1| PHP domain protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 278

 Score = 63.1 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +G  +   ++     +    +A+TD ++    +E  +     G++ I G 
Sbjct: 4  LHTHTTAS--DGTCTPEALVRLAQKEGLKILAVTDHDSAAGVIEAVEAGKKYGVKVIPGV 61


>gi|28869016|ref|NP_791635.1| PHP domain-containing protein [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213968656|ref|ZP_03396798.1| PHP domain protein [Pseudomonas syringae pv. tomato T1]
 gi|301384614|ref|ZP_07233032.1| PHP domain protein [Pseudomonas syringae pv. tomato Max13]
 gi|302062061|ref|ZP_07253602.1| PHP domain protein [Pseudomonas syringae pv. tomato K40]
 gi|302130739|ref|ZP_07256729.1| PHP domain protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28852256|gb|AAO55330.1| PHP domain protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926589|gb|EEB60142.1| PHP domain protein [Pseudomonas syringae pv. tomato T1]
 gi|331017428|gb|EGH97484.1| PHP domain protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 287

 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 2/161 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +GALS   ++ +        +++TD + L    E    A + G+Q + 
Sbjct: 3   VDLHCHSTAS--DGALSPTALVARAHEYGVRVLSLTDHDTLEGLEEARTAAHSLGMQLVN 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L                          +    EG     E +SR   +     ++  
Sbjct: 61  GVELSCTWGGATIHVLGYGFDTQAPALTEAIARLHEGRWLRAEEISRKLAIKGMPGALEG 120

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             +  Q +G  G        +  + RA F      A ++ L
Sbjct: 121 ARAIQQALGDSGNAPARPHFADFMVRAGFVKDRAEAFRKWL 161


>gi|330939569|gb|EGH42886.1| phosphoesterase PHP [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 287

 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 2/132 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + 
Sbjct: 3   VDLHCHSTAS--DGALSPTALVTRAHENGVRVLSLTDHDTLEGLEEAHAAAHSLGMQLVN 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L                          +    EG     E +SR   +     ++  
Sbjct: 61  GVELSCTWGGATIHILGYGFDTQAPALTEAISRLHEGRWLRAEEISRKLAIKGMPGALEG 120

Query: 132 CLSWLQEIGTEG 143
             +  QE+G  G
Sbjct: 121 ARAIQQELGDSG 132


>gi|255505835|ref|ZP_05348396.3| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Bryantella formatexigens DSM 14469]
 gi|255265562|gb|EET58767.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Bryantella formatexigens DSM 14469]
          Length = 289

 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L VHS+ S  +G +S   ++         A A+TD + +    E    A    ++ + 
Sbjct: 11 VDLHVHSNCS--DGTMSPAELVSYACEKGLRAFALTDHDTVAGLPEAFAAAEGTALEVVA 68

Query: 72 GCQLDIDMQ 80
          G +   + +
Sbjct: 69 GIEFSTEYK 77


>gi|194334498|ref|YP_002016358.1| PHP domain-containing protein [Prosthecochloris aestuarii DSM
          271]
 gi|194312316|gb|ACF46711.1| PHP domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 286

 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G  +   I+ K       AI+ITD +++    +    A   GI+ I G 
Sbjct: 18 LHIHTKCS--DGVFTPEEIVLKAKKAGLKAISITDHDSVSGIDKAKPLAIQHGIELINGV 75

Query: 74 QLDIDMQDN 82
          ++    QD+
Sbjct: 76 EMSSTYQDH 84


>gi|326203828|ref|ZP_08193690.1| PHP domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325985926|gb|EGD46760.1| PHP domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 285

 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
          +F+ L  HS+ S  +G++S   ++         A+A+TD + +    E  ++   +G++ 
Sbjct: 3  NFIDLHTHSTAS--DGSMSPAELVRHAKERGLAAVALTDHDTVDGTQEAIKEGKRSGVEV 60

Query: 70 II 71
          I 
Sbjct: 61 IP 62


>gi|146296057|ref|YP_001179828.1| phosphotransferase domain-containing protein
          [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409633|gb|ABP66637.1| PHP C-terminal domain protein [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 279

 Score = 62.7 bits (151), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH+++S  +G  S  ++++        AIAITD +         +K    G++ I G 
Sbjct: 4  LHVHTTFS--DGTYSPEDVVELAKEKGLFAIAITDHDTTDGVKMALKKGEEIGLKIISGV 61

Query: 74 QLDIDMQ 80
          ++  D +
Sbjct: 62 EISADFE 68


>gi|328954239|ref|YP_004371573.1| PHP domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328454563|gb|AEB10392.1| PHP domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 289

 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
          +KS  +V L VHS+ S  +G+ S   ++ K  +    AIA+TD + +    E        
Sbjct: 3  DKSTVYVDLHVHSTAS--DGSFSPREVVIKAKSRGLQAIALTDHDTVDGLEEALAAGKEV 60

Query: 66 GIQPIIGCQLDIDMQDN 82
          G++ I G ++  + +  
Sbjct: 61 GLEVIPGIEISAEHEPG 77


>gi|146276990|ref|YP_001167149.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Rhodobacter
            sphaeroides ATCC 17025]
 gi|145555231|gb|ABP69844.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Rhodobacter
            sphaeroides ATCC 17025]
          Length = 166

 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                         G  + +A +V+ +Q+  T +G  + ++T  +         
Sbjct: 26   RAVPAARLDEPPSGARVAVAGLVLVRQRPGTARG--VIFLTLEDETGVVNVVV 76


>gi|189500798|ref|YP_001960268.1| PHP domain-containing protein [Chlorobium phaeobacteroides BS1]
 gi|189496239|gb|ACE04787.1| PHP domain protein [Chlorobium phaeobacteroides BS1]
          Length = 286

 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G  +   I++K       AI+ITD +++    E    A   GI+ I G 
Sbjct: 18 LHIHTKCS--DGVFTPEEIVEKAKKTGLKAISITDHDSVLGIDEAKPLAIEYGIELITGV 75

Query: 74 QLDIDMQDN 82
          ++    Q +
Sbjct: 76 EMSSTYQGH 84


>gi|325290313|ref|YP_004266494.1| PHP domain protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324965714|gb|ADY56493.1| PHP domain protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 284

 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +G +    ++   A     A+AITD + +    E  + A    I  I G 
Sbjct: 14 LHCHTNMS--DGLMDPAEVVRIAAQKGLSALAITDHDTIQGFAEGKKAALQYNIDFIPGI 71

Query: 74 QLDIDMQDN 82
          +++ D    
Sbjct: 72 EINTDWCGR 80


>gi|323144450|ref|ZP_08079053.1| PHP domain protein [Succinatimonas hippei YIT 12066]
 gi|322415765|gb|EFY06496.1| PHP domain protein [Succinatimonas hippei YIT 12066]
          Length = 281

 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          SF+ L  H++ S  +GALS   ++D+    +   +AITD + +         AC 
Sbjct: 2  SFIDLHCHTNAS--DGALSPEGVVDRAVNYKLTHLAITDHDTVNGIKAAQAAACG 54


>gi|125975229|ref|YP_001039139.1| PHP-like protein [Clostridium thermocellum ATCC 27405]
 gi|256003109|ref|ZP_05428101.1| PHP domain protein [Clostridium thermocellum DSM 2360]
 gi|281419203|ref|ZP_06250219.1| PHP domain protein [Clostridium thermocellum JW20]
 gi|125715454|gb|ABN53946.1| PHP-like protein [Clostridium thermocellum ATCC 27405]
 gi|255992800|gb|EEU02890.1| PHP domain protein [Clostridium thermocellum DSM 2360]
 gi|281407069|gb|EFB37331.1| PHP domain protein [Clostridium thermocellum JW20]
 gi|316939393|gb|ADU73427.1| PHP domain protein [Clostridium thermocellum DSM 1313]
          Length = 282

 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           F+ + +HS+ S  +G++  + ++     +   A+A+TD + +    E  ++    G++ 
Sbjct: 3  RFIDMHIHSTAS--DGSMRPSELVRHAKENGLAAVALTDHDTVDGIKEALEEGERIGLEV 60

Query: 70 IIGCQLDIDMQDNLKM 85
          + G ++ +D    + M
Sbjct: 61 VPGVEISLDFDTEMHM 76


>gi|257457385|ref|ZP_05622556.1| PHP domain protein [Treponema vincentii ATCC 35580]
 gi|257445307|gb|EEV20379.1| PHP domain protein [Treponema vincentii ATCC 35580]
          Length = 286

 Score = 62.3 bits (150), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 69/220 (31%), Gaps = 23/220 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ--PII 71
           L  HS+ S  +G  S   +  +         A+TD + +    E  Q     GI+  P I
Sbjct: 4   LHTHSTAS--DGTFSPAELAAEAHKAGLSLFALTDHDTVAGVAEAQQAGKTLGIRVLPGI 61

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
              ++    +   +     +   T+ S++         +       R  +    +  + I
Sbjct: 62  EISVEWQPGELHLLGLGIDSKNATLASLMQYAQEKRVERN------RRIIEKFYEAGIVI 115

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               L  I    +I     +   ++           +K L   +       Y+  +    
Sbjct: 116 DEEKLAHIAGGSVIGRPHFAKYLVESGKVKTIQDAFQKYLAKGRP-----FYIEKECLPL 170

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLS---EEDYEAH 228
            D      +  +   H +P++A   SL+LS     D  A 
Sbjct: 171 SD-----AIAAIKVAHGVPVLAHPMSLYLSWGKLPDAIAQ 205


>gi|309390073|gb|ADO77953.1| PHP domain protein [Halanaerobium praevalens DSM 2228]
          Length = 295

 Score = 61.9 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 87/274 (31%), Gaps = 31/274 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H++ S  +GA +   ++D         IA+TD +NL S  E    A   G++ I G 
Sbjct: 16  LHMHTTAS--DGASTPAELVDTCLELGLETIAVTDHDNLNSVKETQALASKKGLKVIPGI 73

Query: 74  QLDIDMQDN----------------LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
           ++                       L +T             ++   +  GY    E V 
Sbjct: 74  EISTYRGGAEYHILGYFIDLENDALLGLTEAILDSRVERTHKMIEKLSQMGYPLEFEDVK 133

Query: 118 RMYLLDQGKQSVRICLS-----WLQEIGTEG---LIMLTGGSSGPIDRAFFFNSSQVAEK 169
           + +          +  +     ++ EIG      LI   G +               A +
Sbjct: 134 K-FATGVSLGRPHLARAMVEKGYIDEIGDAFTQELIAGGGKAYAE----KKNVLPAEAIE 188

Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            +L    +        +      ++   +++ ++           ++          A++
Sbjct: 189 VILNAGGIPVIAHPYVINHGPALEQAEIARLKEVGLKGIEVYQTKHDQKTTEHYKKIANE 248

Query: 230 VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
           + + +   +    ++ P + P     +R+E+  +
Sbjct: 249 LDLLITGGSDYHGENSPGILPGDCGLSRAELEKL 282


>gi|255028893|ref|ZP_05300844.1| hypothetical protein LmonL_06366 [Listeria monocytogenes LO28]
          Length = 173

 Score = 61.9 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 4    LQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 59


>gi|149376753|ref|ZP_01894511.1| hypothetical protein MDG893_00310 [Marinobacter algicola DG893]
 gi|149358992|gb|EDM47458.1| hypothetical protein MDG893_00310 [Marinobacter algicola DG893]
          Length = 292

 Score = 61.9 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +GAL    ++ +  A     +AITD + +    E S+ A  AG+  I G 
Sbjct: 13 LHCHTTAS--DGALPPKELVARAHARGVTHLAITDHDTIAGLEEASEAAREAGLTLIAGT 70

Query: 74 QLDIDMQDN 82
          +L    + +
Sbjct: 71 ELSCLWKSH 79


>gi|145629509|ref|ZP_01785307.1| hypothetical protein CGSHi22121_08818 [Haemophilus influenzae
          22.1-21]
 gi|145639003|ref|ZP_01794611.1| hypothetical protein CGSHiII_02415 [Haemophilus influenzae
          PittII]
 gi|144978352|gb|EDJ88116.1| hypothetical protein CGSHi22121_08818 [Haemophilus influenzae
          22.1-21]
 gi|145271975|gb|EDK11884.1| hypothetical protein CGSHiII_02415 [Haemophilus influenzae
          PittII]
 gi|309750963|gb|ADO80947.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
          Length = 274

 Score = 61.9 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HSS S  +G LS   ++ +  A     +A+ D + +    E    A   GI+ I G 
Sbjct: 7  LHCHSSAS--DGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGV 64

Query: 74 QLDIDMQDN 82
          ++  + +  
Sbjct: 65 EISTNWEGR 73


>gi|330811306|ref|YP_004355768.1| hypothetical protein PSEBR_c2g91 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379414|gb|AEA70764.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 287

 Score = 61.9 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 2/132 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +GAL+   ++ +        +A+TD + L    E    A A G+Q + 
Sbjct: 3   VDLHCHSTAS--DGALAPAVLVARAFEHGVRVLALTDHDTLEGLDEARSAATALGMQLVN 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L                       +  +    +G     E +SR   L     ++  
Sbjct: 61  GVELSCTWGGATIHVLGYGFDVNAPALVQAIAQLRDGRWLRSEEISRKLALKGMPGALDG 120

Query: 132 CLSWLQEIGTEG 143
                QE+G  G
Sbjct: 121 ARQIQQELGDSG 132


>gi|257482785|ref|ZP_05636826.1| phosphotransferase domain-containing protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|331012311|gb|EGH92367.1| phosphotransferase domain-containing protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 287

 Score = 61.9 bits (149), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 2/161 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + 
Sbjct: 3   VDLHCHSTAS--DGALSPTALVARAHENGVRVLSLTDHDTLEGLEEARTAAHSLGMQLVN 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L                          +    EG     E +SR   +     ++  
Sbjct: 61  GVELSCTWGGATIHILGYGFDTQAPALTEAISRLHEGRWLRAEEISRKLAIKGMPGALEG 120

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             +  QE+G  G        +  + RA F      A ++ L
Sbjct: 121 ARAIQQELGDSGNAPARPHFADFMVRAGFVKDRAEAFRKWL 161


>gi|291563573|emb|CBL42389.1| Predicted metal-dependent phosphoesterases (PHP family)
          [butyrate-producing bacterium SS3/4]
          Length = 287

 Score = 61.9 bits (149), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +G+L+   ++++       A+A+TD + +    E  + A    ++ I G 
Sbjct: 6  LHIHSTAS--DGSLTPTEVVNRANDLGLTAMALTDHDTVAGIDEALEAAKDLDMEVIPGI 63

Query: 74 QLDI 77
          ++  
Sbjct: 64 EVSC 67


>gi|309973087|gb|ADO96288.1| Conserved hypothetical protein [Haemophilus influenzae R2846]
          Length = 274

 Score = 61.9 bits (149), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +  A     +A+ D + +    E    A   GI+ I G 
Sbjct: 7  LHCHSTAS--DGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGV 64

Query: 74 QLDIDMQDN 82
          ++  + +  
Sbjct: 65 EISTNWEGR 73


>gi|119489615|ref|ZP_01622375.1| hypothetical protein L8106_08401 [Lyngbya sp. PCC 8106]
 gi|119454527|gb|EAW35675.1| hypothetical protein L8106_08401 [Lyngbya sp. PCC 8106]
          Length = 273

 Score = 61.9 bits (149), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           L  H++YS  +G L+ + ++         A+AITD + L  
Sbjct: 3  ELHCHTTYS--DGTLAPSELVASAIQAGVKALAITDHDTLSG 42


>gi|85706855|ref|ZP_01037946.1| putative DNA polymerase III alpha chain protein [Roseovarius sp. 217]
 gi|85668648|gb|EAQ23518.1| putative DNA polymerase III alpha chain protein [Roseovarius sp. 217]
          Length = 118

 Score = 61.9 bits (149), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     G  I +A +V+ +Q+  T +G  + +VT  +         +
Sbjct: 10   AARLSEVSSGARITVAGLVLVRQRPGTARG--VVFVTLEDETGVVNVVIW 57


>gi|229844135|ref|ZP_04464276.1| fumarate hydratase [Haemophilus influenzae 6P18H1]
 gi|229813129|gb|EEP48817.1| fumarate hydratase [Haemophilus influenzae 6P18H1]
          Length = 274

 Score = 61.9 bits (149), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +  A     +A+ D + +    E    A   GI+ I G 
Sbjct: 7  LHCHSTAS--DGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGV 64

Query: 74 QLDIDMQDN 82
          ++  + +  
Sbjct: 65 EISTNWEGR 73


>gi|312135646|ref|YP_004002984.1| PHP domain-containing protein [Caldicellulosiruptor owensensis
          OL]
 gi|311775697|gb|ADQ05184.1| PHP domain protein [Caldicellulosiruptor owensensis OL]
          Length = 279

 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH+++S  +G L+   ++         AIAITD +         ++    G++ + G 
Sbjct: 4  LHVHTTFS--DGTLTPQEVVKLAKEKGLIAIAITDHDTTDGVKAAIEEGERLGLKVVSGV 61

Query: 74 QLDIDMQ 80
          ++  D +
Sbjct: 62 EISADFE 68


>gi|298488127|ref|ZP_07006164.1| Protein trpH [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298157406|gb|EFH98489.1| Protein trpH [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 287

 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 2/161 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + 
Sbjct: 3   VDLHCHSTAS--DGALSPTALVARAHENGVRVLSLTDHDTLEGLEEARAAAHSLGMQLVN 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L                          +    EG     E +SR   +     ++  
Sbjct: 61  GVELSCTWGGATIHILGYGFDTQAPALTEAISRLHEGRWLRAEEISRKLAIKGMPGALEG 120

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             +  QE+G  G        +  + RA F      A ++ L
Sbjct: 121 ARAIQQELGDSGNAPARPHFADFMVRAGFVKDRAEAFRKWL 161


>gi|71733848|ref|YP_275691.1| phosphotransferase domain-containing protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|289624035|ref|ZP_06456989.1| phosphotransferase domain-containing protein [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289650384|ref|ZP_06481727.1| phosphotransferase domain-containing protein [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|71554401|gb|AAZ33612.1| PHP domain protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320323238|gb|EFW79326.1| phosphotransferase domain-containing protein [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320329731|gb|EFW85720.1| phosphotransferase domain-containing protein [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330866209|gb|EGH00918.1| phosphotransferase domain-containing protein [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330881428|gb|EGH15577.1| phosphotransferase domain-containing protein [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 287

 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 2/161 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + 
Sbjct: 3   VDLHCHSTAS--DGALSPTALVARAHENGVRVLSLTDHDTLEGLEEARAAAHSLGMQLVN 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L                          +    EG     E +SR   +     ++  
Sbjct: 61  GVELSCTWGGATIHILGYGFDTQAPALTEAISRLHEGRWLRAEEISRKLAIKGMPGALEG 120

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             +  QE+G  G        +  + RA F      A ++ L
Sbjct: 121 ARAIQQELGDSGNAPARPHFADFMVRAGFVKDRAEAFRKWL 161


>gi|148825941|ref|YP_001290694.1| fumarate hydratase [Haemophilus influenzae PittEE]
 gi|148716101|gb|ABQ98311.1| fumarate hydratase [Haemophilus influenzae PittEE]
          Length = 274

 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +  A     +A+ D + +    E    A   GI+ I G 
Sbjct: 7  LHCHSTAS--DGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGV 64

Query: 74 QLDIDMQDN 82
          ++  + +  
Sbjct: 65 EISTNWEGR 73


>gi|325578396|ref|ZP_08148531.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Haemophilus parainfluenzae ATCC 33392]
 gi|325160132|gb|EGC72261.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Haemophilus parainfluenzae ATCC 33392]
          Length = 275

 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L+   ++ +        +A+ D + +    E   +A   GI+ I G 
Sbjct: 7  LHCHSTAS--DGVLTPTELVQRAHEQGVNVLALCDHDTVMGIDEAQIEADKLGIELINGV 64

Query: 74 QLDIDMQDN 82
          ++  + +  
Sbjct: 65 EISTNWEGR 73


>gi|253577101|ref|ZP_04854422.1| PHP domain-containing protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251843483|gb|EES71510.1| PHP domain-containing protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 340

 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 6/132 (4%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  H+ +S  +GA +L  + +  A     AIA+TD N +         +   G+  + G
Sbjct: 7   ELHTHTLHS--DGAQTLEELAEGAAKLGFDAIALTDHNTMTGLAGKETISKKFGLLIVPG 64

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            +        + +       +             EG Q +  L     L    +     C
Sbjct: 65  MEWTTFYGHMVTIGLSEYADWRKADR----SKIDEGIQAVHRLGGIAGLAHPFRIGSPAC 120

Query: 133 LSWLQEIGTEGL 144
                E   +  
Sbjct: 121 TGCFWEYEIQDW 132


>gi|313623920|gb|EFR94028.1| DNA polymerase III PolC-type [Listeria innocua FSL J1-023]
          Length = 81

 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
             +   +F +  + +     AI  +GT  A+ I+ A  D  F S ED   R    K+++ 
Sbjct: 2   YKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAAREDGEFLSKEDLQQR---GKVSKT 58

Query: 881 VLESLVFAGALDCF 894
           +++ +   G L+  
Sbjct: 59  IIQYMDDQGCLEGL 72


>gi|315282171|ref|ZP_07870637.1| DNA polymerase III PolC-type [Listeria marthii FSL S4-120]
 gi|313614183|gb|EFR87861.1| DNA polymerase III PolC-type [Listeria marthii FSL S4-120]
          Length = 80

 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
             +   +F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    K+++ 
Sbjct: 1   YKSSADEFLIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---GKVSKT 57

Query: 881 VLESLVFAGALDCF 894
           +++ +   G L+  
Sbjct: 58  IIQYMDDQGCLEGL 71


>gi|260583026|ref|ZP_05850808.1| fumarate hydratase [Haemophilus influenzae NT127]
 gi|260093877|gb|EEW77783.1| fumarate hydratase [Haemophilus influenzae NT127]
          Length = 274

 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +  A     +A+ D + +    E    A   GI+ I G 
Sbjct: 7  LHCHSTAS--DGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGV 64

Query: 74 QLDIDMQDN 82
          ++  + +  
Sbjct: 65 EISTNWEGR 73


>gi|325960100|ref|YP_004291566.1| PHP domain-containing protein [Methanobacterium sp. AL-21]
 gi|325331532|gb|ADZ10594.1| PHP domain protein [Methanobacterium sp. AL-21]
          Length = 210

 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             HS YS  +G +    ++          IA+TD   +  ALE  +K     I+ IIG +
Sbjct: 6   HTHSKYSA-DGYVKPRELVKAAVKKGLDGIAVTDHGTIKGALEA-KKYETNKIKVIIGSE 63

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           +  ++ + + +    +        +V  + +  G
Sbjct: 64  ILTNIGEVIGLFLMDEVVSYDFYDVVEDIKSQNG 97


>gi|52425091|ref|YP_088228.1| hypothetical protein MS1036 [Mannheimia succiniciproducens
          MBEL55E]
 gi|52307143|gb|AAU37643.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 288

 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS + I+ +       ++A+TD + +    E  ++A   G++ I G 
Sbjct: 8  LHCHSTAS--DGILSPSEIVQRAHEQGVQSLALTDHDTISGLTEARRQAELLGVEFINGV 65

Query: 74 QLDIDMQDN 82
          ++    ++ 
Sbjct: 66 EISTSWENK 74


>gi|319776316|ref|YP_004138804.1| hypothetical protein HICON_17170 [Haemophilus influenzae F3047]
 gi|329123466|ref|ZP_08252030.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Haemophilus aegyptius ATCC 11116]
 gi|317450907|emb|CBY87133.1| conserved hypothetical protein [Haemophilus influenzae F3047]
 gi|327471048|gb|EGF16503.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Haemophilus aegyptius ATCC 11116]
          Length = 274

 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +  A     +A+ D + +    E    A   GI+ I G 
Sbjct: 7  LHCHSTAS--DGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGV 64

Query: 74 QLDIDMQDN 82
          ++  + +  
Sbjct: 65 EISTNWEGR 73


>gi|229846743|ref|ZP_04466850.1| fumarate hydratase [Haemophilus influenzae 7P49H1]
 gi|229810232|gb|EEP45951.1| fumarate hydratase [Haemophilus influenzae 7P49H1]
          Length = 264

 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +  A     +A+ D + +    E    A   GI+ I G 
Sbjct: 7  LHCHSTAS--DGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGV 64

Query: 74 QLDIDMQDN 82
          ++  + +  
Sbjct: 65 EISTNWEGR 73


>gi|52841672|ref|YP_095471.1| metal dependent phosphoesterase [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
 gi|52628783|gb|AAU27524.1| metal dependent phosphoesterase [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
          Length = 282

 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L  HSS+S  +GAL+   ++ + +  Q   +++TD + +         A    I+ + 
Sbjct: 7  LHCHSSFS--DGALTPEELIKRASTLQVECLSLTDHDTVAGYDALYDAAVHTNIKIVK 62


>gi|16273309|ref|NP_439553.1| hypothetical protein HI1400 [Haemophilus influenzae Rd KW20]
 gi|260580764|ref|ZP_05848590.1| trpH protein [Haemophilus influenzae RdAW]
 gi|1175777|sp|P44176|TRPH_HAEIN RecName: Full=Protein trpH
 gi|1574235|gb|AAC23046.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260092581|gb|EEW76518.1| trpH protein [Haemophilus influenzae RdAW]
          Length = 274

 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +  A     +A+ D + +    E    A   GI+ I G 
Sbjct: 7  LHCHSTAS--DGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGV 64

Query: 74 QLDIDMQDN 82
          ++  + +  
Sbjct: 65 EISTNWEGR 73


>gi|307718423|ref|YP_003873955.1| hypothetical protein STHERM_c07240 [Spirochaeta thermophila DSM
          6192]
 gi|306532148|gb|ADN01682.1| hypothetical protein STHERM_c07240 [Spirochaeta thermophila DSM
          6192]
          Length = 283

 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GALS + ++ + A      +A+TD +      E S+ A   GI  I G 
Sbjct: 5  LHTHSTAS--DGALSPSLLIKEAARLGIGLLALTDHDTTSGLEEASRAAREEGISFIPGI 62

Query: 74 QLDIDMQDN 82
          ++++  +  
Sbjct: 63 EMEVAHEGG 71


>gi|254236162|ref|ZP_04929485.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126168093|gb|EAZ53604.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 295

 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 10/109 (9%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +G L+   ++ +        +A+TD + L    E  Q A   GI+ + 
Sbjct: 3   VDLHCHSTAS--DGVLAPAALVQRAHEKGVGLLALTDHDTLEGLPEAHQAAARLGIELVN 60

Query: 72  GCQLDIDMQD--------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
           G +L                 +                     E  +RL
Sbjct: 61  GVELSCTWGGATIHVLGYGFDLDAAPLRQATEALHRGRWARAEEIDRRL 109


>gi|15598396|ref|NP_251890.1| hypothetical protein PA3200 [Pseudomonas aeruginosa PAO1]
 gi|9949320|gb|AAG06588.1|AE004744_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 295

 Score = 61.5 bits (148), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 10/109 (9%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +G L+   ++ +        +A+TD + L    E  Q A   GI+ + 
Sbjct: 3   VDLHCHSTAS--DGVLAPAALVQRAHEKGVGLLALTDHDTLEGLPEAHQAAARLGIELVN 60

Query: 72  GCQLDIDMQD--------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
           G +L                 +                     E  +RL
Sbjct: 61  GVELSCTWGGATIHVLGYGFDLDAAPLRQATEALHRGRWARAEEIDRRL 109


>gi|296454513|ref|YP_003661656.1| PHP C-terminal domain-containing protein [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296183944|gb|ADH00826.1| PHP C-terminal domain protein [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 297

 Score = 61.5 bits (148), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 8/111 (7%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+ +S  +G  +   + ++  A     +AI+D +      E        G+ P++   
Sbjct: 21  HCHTVFS--DGTETPATLAEQSKALGLKGVAISDHDTTAGWPEAEAATHRVGL-PLLRGT 77

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGY----QRLIELVSRMY 120
                 +N+ +   G    PT   I  L   T        QR++EL+SR Y
Sbjct: 78  EITATDENVSVHMLGYQYDPTNQHITDLFADTRAARLQRTQRMVELLSRDY 128


>gi|152997399|ref|YP_001342234.1| phosphotransferase domain-containing protein [Marinomonas sp.
          MWYL1]
 gi|150838323|gb|ABR72299.1| PHP domain protein [Marinomonas sp. MWYL1]
          Length = 283

 Score = 61.5 bits (148), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 5  LEKSPSF--VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
          + ++ S+  V L  HS+ S  +G  S   ++D          A+TD + L   +E SQ+A
Sbjct: 1  MPEAASYRKVDLHTHSTRS--DGRFSPAELVDLAVEQGVSLFALTDHDTLDGIVEASQRA 58

Query: 63 CAAGIQPIIGC 73
             G+  I G 
Sbjct: 59 VEHGLSFIHGV 69


>gi|159045272|ref|YP_001534066.1| hypothetical protein Dshi_2732 [Dinoroseobacter shibae DFL 12]
 gi|157913032|gb|ABV94465.1| hypothetical protein Dshi_2732 [Dinoroseobacter shibae DFL 12]
          Length = 137

 Score = 61.5 bits (148), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 +       G  +R+A +V+ +Q+  T  G  + ++T  +         +
Sbjct: 27   ACVPAQLLDRPPNGARVRVAGLVLLRQRPGTAHG--VIFITLEDETGTINVVVW 78


>gi|296388313|ref|ZP_06877788.1| putative PHP domain protein [Pseudomonas aeruginosa PAb1]
 gi|313108517|ref|ZP_07794518.1| putative PHP domain-containing protein [Pseudomonas aeruginosa
           39016]
 gi|310881020|gb|EFQ39614.1| putative PHP domain-containing protein [Pseudomonas aeruginosa
           39016]
          Length = 295

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 10/109 (9%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +G L+   ++ +        +A+TD + L    E  Q A   GI+ + 
Sbjct: 3   VDLHCHSTAS--DGVLAPAALVQRAHEKGVGLLALTDHDTLEGLPEAHQAAARLGIELVN 60

Query: 72  GCQLDIDMQD--------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
           G +L                 +                     E  +RL
Sbjct: 61  GVELSCTWGGATIHVLGYGFDLDAAPLRQATEALHRGRWARAEEIDRRL 109


>gi|145636112|ref|ZP_01791782.1| fumarate hydratase [Haemophilus influenzae PittHH]
 gi|145270634|gb|EDK10567.1| fumarate hydratase [Haemophilus influenzae PittHH]
          Length = 274

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +  A     +A+ D + +    E    A   GI+ I G 
Sbjct: 7  LHCHSTAS--DGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGV 64

Query: 74 QLDIDMQDN 82
          ++  + +  
Sbjct: 65 EISTNWEGR 73


>gi|291538550|emb|CBL11661.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Roseburia intestinalis XB6B4]
          Length = 289

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L VHS+ S  +G  +   ++ +       AIA+TD +      +    A  AGI+ I 
Sbjct: 6  VDLHVHSTES--DGTFTPTEVIAEAKKAGLSAIALTDHDTATGIRKAMGAAKEAGIELIP 63

Query: 72 GCQLDIDMQDNLKMTNQ 88
          G +L        K   +
Sbjct: 64 GIELSTAYTFPGKKQEK 80


>gi|253583313|ref|ZP_04860511.1| phosphotransferase domain-containing protein [Fusobacterium
          varium ATCC 27725]
 gi|251833885|gb|EES62448.1| phosphotransferase domain-containing protein [Fusobacterium
          varium ATCC 27725]
          Length = 276

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V + +H+  S  +G  +   I+ +  +    +IAITD + +    E  + A   GI+ I 
Sbjct: 3  VDMHIHTIAS--DGTFTPEEIVKRAKSLGMKSIAITDHDTIDGLEEGKRTAAEIGIEFIQ 60

Query: 72 GCQLDIDMQD 81
          G ++  ++ +
Sbjct: 61 GIEISCNVDN 70


>gi|226227396|ref|YP_002761502.1| hypothetical protein GAU_1990 [Gemmatimonas aurantiaca T-27]
 gi|226090587|dbj|BAH39032.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 299

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 87/236 (36%), Gaps = 35/236 (14%)

Query: 4   YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
           +   +P+FV LQVH++ S  +GAL+   ++      Q  AIAITD + +    E +    
Sbjct: 19  HTASTPAFVDLQVHTTAS--DGALAPAVVVQAAHDAQLAAIAITDHDTVDGLDEATAAGE 76

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR-LIELVSRMYLL 122
           A G++ + G +L    ++              +  + L ++  +  +  L EL ++  + 
Sbjct: 77  ALGVRIVPGVELSTHFENE------------ELHLLGLHIANRDAIRSALRELQAQRVVR 124

Query: 123 DQG-------KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +                + L+E G            G + R     +  +A   +  F+
Sbjct: 125 AERIVAVLNAHGMPITMDAVLREAG-----------DGAVGRPHVARAM-LAGGWVREFR 172

Query: 176 KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED-YEAHDV 230
           + F   +      +   DR+  +  + L +      V  +     ++    +  DV
Sbjct: 173 EAFDKWIGFGRPAYMAKDRFDVADAIALVHRAGGIAVWAHPGEQATQPRIRKLMDV 228


>gi|148826883|ref|YP_001291636.1| fumarate hydratase [Haemophilus influenzae PittGG]
 gi|148718125|gb|ABQ99252.1| fumarate hydratase [Haemophilus influenzae PittGG]
          Length = 274

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +  A     +A+ D + +    E    A   GI+ I G 
Sbjct: 7  LHCHSTAS--DGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGV 64

Query: 74 QLDIDMQDN 82
          ++  + +  
Sbjct: 65 EISTNWEGR 73


>gi|229592267|ref|YP_002874386.1| hypothetical protein PFLU4880 [Pseudomonas fluorescens SBW25]
 gi|229364133|emb|CAY51765.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 287

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 2/132 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +GAL+   ++ +        +++TD + L    E  + A + G+Q + 
Sbjct: 3   VDLHCHSTAS--DGALAPAVLVARAFEKGVRVLSLTDHDTLEGLDEAREAAHSLGMQLVN 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L                     P +  +    +G     E +SR   L     ++  
Sbjct: 61  GVELSCTWGGATIHVLGYGFDQNAAPLVAAIAQLHDGRWLRSEEISRKLSLKGMPGALEG 120

Query: 132 CLSWLQEIGTEG 143
             +  QE+G  G
Sbjct: 121 ARAIQQELGDSG 132


>gi|118579101|ref|YP_900351.1| phosphotransferase domain-containing protein [Pelobacter
          propionicus DSM 2379]
 gi|118501811|gb|ABK98293.1| PHP C-terminal domain protein [Pelobacter propionicus DSM 2379]
          Length = 294

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 1  LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          +   +  +P ++ L VHS+ S  +GALS   ++++    +   IAI D +++ +  + + 
Sbjct: 1  MRSMIASTPGYIDLHVHSNCS--DGALSPAALVEEAKRLELSTIAIADHDSIVAVDQAAH 58

Query: 61 KACAAGIQPIIGC 73
           A   GI+ +   
Sbjct: 59 CAVLRGIELMPAV 71


>gi|212703383|ref|ZP_03311511.1| hypothetical protein DESPIG_01426 [Desulfovibrio piger ATCC
          29098]
 gi|212673229|gb|EEB33712.1| hypothetical protein DESPIG_01426 [Desulfovibrio piger ATCC
          29098]
          Length = 286

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F+ L  HS  S  +G  S   ++         A+A+TD + +    E    A   G+  +
Sbjct: 3  FIDLHTHSQAS--DGTDSPGQLVRNARMQGLAAVAVTDHDTVSGLDEAEAAARDLGLDFV 60

Query: 71 IGC 73
           GC
Sbjct: 61 RGC 63


>gi|78188459|ref|YP_378797.1| phosphoesterase PHP-like [Chlorobium chlorochromatii CaD3]
 gi|78170658|gb|ABB27754.1| Phosphoesterase PHP-like protein [Chlorobium chlorochromatii CaD3]
          Length = 286

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 84/260 (32%), Gaps = 58/260 (22%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H+  S  +G  +   I++K A     AI+ITD +++    +    A   G++ I G 
Sbjct: 18  LHIHTKCS--DGLFTPEEIVEKAARIGLNAISITDHDSVLGIDKAKPLALEKGVELIAGV 75

Query: 74  -------------------QLDIDMQDNLKMTNQGKTPFPT--------------VPSIV 100
                                  +++D L    Q +T                  +  I+
Sbjct: 76  EMSSTYKGYDIHILGYFFDYQHSELKDYLDHCRQLRTDRAERMVSKLAKMGVKIGIEQII 135

Query: 101 LLVST-------------AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML 147
           +                   GY   ++  S  +    G  S     S   E     +I L
Sbjct: 136 VKAQNGSVGRPHIAAVLQDGGY---VKSFSEAFSKYLGAHSPAYVKSV--ETHPADIIRL 190

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
              +SG    A    +    ++ L     L  D + +    H  +D YR++   ++A  +
Sbjct: 191 INKASGLSFLAHPAQNVP--DEVLKQLITLGLDGIEI---IHPSHDTYRQNYYREIANEY 245

Query: 208 ELPLVATNNSLFLSEEDYEA 227
            L     ++   + E D + 
Sbjct: 246 FLLFSGGSDYHGIRERDEDL 265


>gi|240146868|ref|ZP_04745469.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Roseburia
          intestinalis L1-82]
 gi|257200966|gb|EEU99250.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Roseburia
          intestinalis L1-82]
          Length = 188

 Score = 61.2 bits (147), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L VHS+ S  +G  +   ++ +       AIA+TD +      +    A  AGI+ I 
Sbjct: 6  VDLHVHSTES--DGTFTPTEVIAEAKKAGLSAIALTDHDTATGIRKAMGAAKEAGIELIP 63

Query: 72 GCQLDIDMQDNLKMTNQ 88
          G +L        K   +
Sbjct: 64 GIELSTAYTFPGKKQEK 80


>gi|225389528|ref|ZP_03759252.1| hypothetical protein CLOSTASPAR_03276 [Clostridium asparagiforme
           DSM 15981]
 gi|225044413|gb|EEG54659.1| hypothetical protein CLOSTASPAR_03276 [Clostridium asparagiforme
           DSM 15981]
          Length = 282

 Score = 61.2 bits (147), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 81/262 (30%), Gaps = 55/262 (20%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FV L VHS+ S  +G+     ++         AIA+TD + +         A AAGI+ 
Sbjct: 2   GFVDLHVHSTAS--DGSCPPEAVISLAVQAGLDAIALTDHDTVDGIPAAQDAADAAGIRL 59

Query: 70  IIGCQ-----------------LDIDMQDNLKMTNQGKTPFPTVPSI------------- 99
           I G +                    D      + +  +        +             
Sbjct: 60  IPGIEVSSIYHGTEIHILGLFVTPSDPALGSMLEDFRRIRDDRNRQLLSSLEKDGMPLTR 119

Query: 100 ----------------VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG 143
                           V       GY   ++   + YL   GK   R      + + +  
Sbjct: 120 AQLTGSNPDTVITRAHVARAMVEAGYASSLDQAYKRYLRYGGKYCPRKASPAPEAVVSA- 178

Query: 144 LIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRHRGYDRYRESQVVQ 202
             +L+GG+   +   + +N      + L    K++    L V    H  ++++   ++  
Sbjct: 179 --LLSGGAFVSLAHPYQYNLGDGGIRTLATQMKEMGMQGLEV---YHSSHNQHESGKLQV 233

Query: 203 LAYTHELPLVATNNSLFLSEED 224
           LA    L     ++    ++ D
Sbjct: 234 LAKELGLLPTGGSDFHGANKPD 255


>gi|291522841|emb|CBK81134.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Coprococcus catus GD/7]
          Length = 277

 Score = 61.2 bits (147), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G+++ + ++   A+    A+A+TD +      E  Q A   GI+ + G 
Sbjct: 6  LHTHSTAS--DGSMTPSELVHHAASCGLRAVALTDHDTTVGLTEAQQAANEIGIELVHGV 63


>gi|134299764|ref|YP_001113260.1| phosphotransferase domain-containing protein [Desulfotomaculum
          reducens MI-1]
 gi|134052464|gb|ABO50435.1| PHP C-terminal domain protein [Desulfotomaculum reducens MI-1]
          Length = 275

 Score = 61.2 bits (147), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +  L +H++ S  +G+ + + ++ K       AIAI+D + +   LE  + A    ++ I
Sbjct: 3  YADLHIHTTAS--DGSDTPSEVVHKALEIGLRAIAISDHDTMDGVLEAERAAEKFNLEVI 60

Query: 71 IGCQLDIDMQ 80
           G +++   +
Sbjct: 61 SGVEVNTFFE 70


>gi|320104117|ref|YP_004179708.1| PHP domain-containing protein [Isosphaera pallida ATCC 43644]
 gi|319751399|gb|ADV63159.1| PHP domain protein [Isosphaera pallida ATCC 43644]
          Length = 320

 Score = 61.2 bits (147), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 85/274 (31%), Gaps = 48/274 (17%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+S S  +G+ +   ++   AA    A+AITD + +        +A   G+  + G 
Sbjct: 18  LHTHTSRS--DGSCAPGEVVRAAAALGLSAVAITDHDTIAGLSPARLEAERLGLILVPGV 75

Query: 74  QLDIDMQDN--------LKMTNQG------KTPFPTVPSIVLLVST-------------- 105
           +L +  +           +  + G            V  +  +V+               
Sbjct: 76  ELTVHWRGREFHLLAYGFREEDPGLNAMLDGLAQARVERLRTIVANLEHRHGVVVEFEAV 135

Query: 106 AEGYQRLI--------ELVSR---MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
             GY R           LV++       D   + +      L     +    +       
Sbjct: 136 RAGYPRAALGRGHLADHLVTQGVVASRRDAFDRFLGDDQLDLPRPSLDLEQAIHTVRQAG 195

Query: 155 IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVAT 214
              A       + + + + ++ L  + +     R    DR    ++ +LA      +VA 
Sbjct: 196 GFTALAHPPRDLDDSQWVQWRDLGMEAV---ETRWPAADRNTRVKMGRLARRLGFEIVAG 252

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
           ++  F        H  + AV       ++ R R+
Sbjct: 253 SD--FHHPGRAGRH--VGAVGLGPGEWERLRDRL 282


>gi|107102730|ref|ZP_01366648.1| hypothetical protein PaerPA_01003797 [Pseudomonas aeruginosa PACS2]
 gi|218890607|ref|YP_002439471.1| putative PHP domain protein [Pseudomonas aeruginosa LESB58]
 gi|254241888|ref|ZP_04935210.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126195266|gb|EAZ59329.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218770830|emb|CAW26595.1| putative PHP domain protein [Pseudomonas aeruginosa LESB58]
          Length = 295

 Score = 61.2 bits (147), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 10/109 (9%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +G L+   ++ +        +A+TD + L    E  Q A   GI+ + 
Sbjct: 3   VDLHCHSTAS--DGVLAPAALVQRAHEKGVGLLALTDHDTLEGLPEAHQAAARLGIELVN 60

Query: 72  GCQLDIDMQD--------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
           G +L                 +                     E  +RL
Sbjct: 61  GIELSCTWGGATIHVLGYGFDLDAAPLRQATEALHRGRWARAEEIDRRL 109


>gi|312621881|ref|YP_004023494.1| PHP domain-containing protein [Caldicellulosiruptor
          kronotskyensis 2002]
 gi|312202348|gb|ADQ45675.1| PHP domain protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 279

 Score = 61.2 bits (147), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH+++S  +G L+   ++      +  AIAITD +     +    +    GI+ + G 
Sbjct: 4  LHVHTTFS--DGTLTPQEVVKLAKEKRLFAIAITDHDTTDGVIHAIDEGNRLGIKVVSGV 61

Query: 74 QLDIDMQ 80
          ++  D +
Sbjct: 62 EISADFE 68


>gi|291532878|emb|CBL05991.1| DNA polymerase III, alpha subunit [Megamonas hypermegale ART12/1]
          Length = 62

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 41  QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
             +IAITD   ++  + F ++A   GI+PIIGC++ +  +         +        ++
Sbjct: 1   MKSIAITDHGTMYGTIAFYKEALKQGIKPIIGCEVYVAPKSRFDNF---EVEGTRYYHLI 57

Query: 101 LLVS 104
           LL  
Sbjct: 58  LLAE 61


>gi|237799075|ref|ZP_04587536.1| phosphotransferase domain-containing protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331021929|gb|EGI01986.1| phosphotransferase domain-containing protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 187

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 2/132 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + 
Sbjct: 3   VDLHCHSTAS--DGALSPKALVARAHENGVRVLSLTDHDTLEGLEEARAAALSLGMQLVN 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L                          +    +G     E +SR   +     ++  
Sbjct: 61  GVELSCVWGGATIHVLGYGFDTQAPALTDAIARLHDGRWLRAEEISRKLAIKGMPGALEG 120

Query: 132 CLSWLQEIGTEG 143
             +  QE+G  G
Sbjct: 121 ARAIQQELGDSG 132


>gi|302391015|ref|YP_003826835.1| PHP domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302203092|gb|ADL11770.1| PHP domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 451

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 78/243 (32%), Gaps = 38/243 (15%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S  +G+ +   +++K        IA+TD + +         A    ++ I 
Sbjct: 4   VDLHLHTTAS--DGSYTPEELVEKAVGMGLETIAVTDHDTVGGVAPALTAAKEVDLEVIP 61

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR----LIELVSRMYLLDQGK- 126
           G +    +             +     ++ L    E  +     ++E ++++ L  + K 
Sbjct: 62  GVEFTTYVGQEEVHILGYYFDYLDQNFLMELTKLKEARENRGKKIVEKLNKLGLELEWKS 121

Query: 127 ----------QSVRICLSWLQEIGTEGLIML---TGGSSGPIDRAFFFNSSQVAEKR--- 170
                         I  + + E     +        G  GP        + Q A +    
Sbjct: 122 VIEVAGSGAVGRPHIARALVNEGYVADVSAAFEDYLGDRGPAYVPKTQLTPQDAIEAINE 181

Query: 171 ------LLTFKKLFGDRLYVNLQ---------RHRGYDRYRESQVVQLAYTHELPLVATN 215
                 L     L  + L V +           + G+D     Q ++LA  ++L +   +
Sbjct: 182 AGGVAVLAHPGHLSTNELIVEIIEAGIDGIEAYYSGHDEEETKQYIKLANRYDLIITGGS 241

Query: 216 NSL 218
           +  
Sbjct: 242 DCH 244


>gi|258404845|ref|YP_003197587.1| PHP domain-containing protein [Desulfohalobium retbaense DSM
          5692]
 gi|257797072|gb|ACV68009.1| PHP domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 291

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L+   ++     +Q  A+A+TD +      E  +     G++ I GC
Sbjct: 6  LHTHSNAS--DGTLTPRELIALARQEQVAAVALTDHDTTMGLPEAIEAGRELGVEVIPGC 63

Query: 74 QLDIDMQDNL 83
          +L +D    +
Sbjct: 64 ELSVDFPGGM 73


>gi|149914439|ref|ZP_01902970.1| DNA polymerase III alpha subunit, putative [Roseobacter sp. AzwK-3b]
 gi|149811958|gb|EDM71791.1| DNA polymerase III alpha subunit, putative [Roseobacter sp. AzwK-3b]
          Length = 127

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     G  + +A +V+ +Q+  T KG  + ++T  +         +
Sbjct: 27   AARLSEPPEGARVAVAGLVILRQRPGTAKG--VIFLTLEDETGVVNVVVW 74


>gi|110596846|ref|ZP_01385136.1| PHP-like [Chlorobium ferrooxidans DSM 13031]
 gi|110341533|gb|EAT59993.1| PHP-like [Chlorobium ferrooxidans DSM 13031]
          Length = 286

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G  +   I++K AA    AI+ITD +++    +    A A GI+ + G 
Sbjct: 18 LHIHTKCS--DGLYTPEEIVEKAAAAGLKAISITDHDSVSGIDKAKPLALAKGIELVPGV 75

Query: 74 QLDIDMQ 80
          ++    +
Sbjct: 76 EMSSTYK 82


>gi|302188868|ref|ZP_07265541.1| phosphoesterase PHP, N-terminal:PHP, C-terminal [Pseudomonas
          syringae pv. syringae 642]
          Length = 287

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + 
Sbjct: 3  VDLHCHSTAS--DGALSPTALVARAHENGVRVLSLTDHDTLEGLEEARTAAHSLGMQLVN 60

Query: 72 GCQLDIDMQ 80
          G +L     
Sbjct: 61 GVELSCTWG 69


>gi|302872359|ref|YP_003840995.1| PHP domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302575218|gb|ADL43009.1| PHP domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 279

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH+++S  +G  +   ++         AIAITD +      +  ++    G++ + G 
Sbjct: 4  LHVHTTFS--DGTFTPQEVVRFAKEKGLFAIAITDHDTTDGVKDAIEEGERLGLKVVSGV 61

Query: 74 QLDIDMQ 80
          ++  D +
Sbjct: 62 EISADFE 68


>gi|317125691|ref|YP_004099803.1| PHP domain protein [Intrasporangium calvum DSM 43043]
 gi|315589779|gb|ADU49076.1| PHP domain protein [Intrasporangium calvum DSM 43043]
          Length = 305

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 69/203 (33%), Gaps = 21/203 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  + + ++          +AITD + +    E  Q A   G+  + G 
Sbjct: 27  LHTHSTAS--DGTDTPSELVAAAQQAGIDVLAITDHDTVAGWAEAEQAARHLGVTLVRGI 84

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV---LLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           ++      +  +   G  P P   +++        +    RL  +V  M           
Sbjct: 85  EVSTAYG-HASIHVLGYLPDPADETLMGELARARDSRA-TRLERMVDLMAADG----IPI 138

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                L+++        T G     D      + +  ++    +  L  +  Y     H 
Sbjct: 139 TYPEVLRQVAPGA----TPGRPHIADALIANGTIRHRDEAFREW--LTNESPY--YVTHY 190

Query: 191 GYDRYRESQVVQLAYTHELPLVA 213
             D  R  ++V+ A    +P++A
Sbjct: 191 SPDPVRACELVRRA--GGVPVLA 211


>gi|54294523|ref|YP_126938.1| hypothetical protein lpl1599 [Legionella pneumophila str. Lens]
 gi|53754355|emb|CAH15839.1| hypothetical protein lpl1599 [Legionella pneumophila str. Lens]
          Length = 279

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HSS+S  +GAL+   ++ +    Q   +++TD + +         A    I+ + G 
Sbjct: 4  LHCHSSFS--DGALTPEELIKRATTLQVQCLSLTDHDTVAGYDALYDAAIHTNIKIVKGV 61


>gi|315185557|gb|EFU19326.1| PHP domain protein [Spirochaeta thermophila DSM 6578]
          Length = 283

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GALS + ++ + A      +A+TD +      E S+ A   GI  I G 
Sbjct: 5  LHTHSTAS--DGALSPSLLIKEAARLGIGLLALTDHDTTSGLEEASRAAREEGISFIPGI 62

Query: 74 QLDIDMQDN 82
          ++++  +  
Sbjct: 63 EIEVAHEGG 71


>gi|307610145|emb|CBW99691.1| hypothetical protein LPW_14591 [Legionella pneumophila 130b]
          Length = 279

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L  HSS+S  +GAL+   ++ +    Q   +++TD + +         A    I+ + 
Sbjct: 4  LHCHSSFS--DGALTPEELIKRATTLQVQCLSLTDHDTVAGYDALYDAAIHTNIKIVK 59


>gi|77457714|ref|YP_347219.1| PHP-like [Pseudomonas fluorescens Pf0-1]
 gi|77381717|gb|ABA73230.1| coserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 287

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 2/107 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +GAL+   ++ +   +    +++TD + L    E    A A G+Q + 
Sbjct: 3   VDLHCHSTAS--DGALAPAALVARAFENGVRVLSLTDHDTLEGLAEARTAAEALGMQLVN 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
           G +L                     P +  + +  +G     E +SR
Sbjct: 61  GVELSCTWGGATIHVLGYGFDVNAAPLVEAIANLHDGRWLRSEEISR 107


>gi|88856775|ref|ZP_01131429.1| hypothetical protein A20C1_13211 [marine actinobacterium PHSC20C1]
 gi|88813943|gb|EAR23811.1| hypothetical protein A20C1_13211 [marine actinobacterium PHSC20C1]
          Length = 286

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 61/179 (34%), Gaps = 9/179 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +  +P  + L  HS+ S  +G  +   ++   A      +AITD ++     E    A  
Sbjct: 1   MPNTP--IDLHTHSAVS--DGTETPTQLIRSAARAGLGTVAITDHDSTAGWQEAIAAASV 56

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +GI  I G +L  +                    +       +G      L     ++++
Sbjct: 57  SGINVIPGMELSTNYGPASVHVLAYLFDPLNRTIVTETARIRDG-----RLRRAERIVEK 111

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             Q   +    +    ++G  +     +  + R     +   A + +L ++  + ++ Y
Sbjct: 112 ISQDYDLTWDDVLAESSDGTTLGRPHIADALVRKGHVVNRSAAFESILHWQGGYYEKYY 170


>gi|260598147|ref|YP_003210718.1| protein trpH [Cronobacter turicensis z3032]
 gi|260217324|emb|CBA31311.1| Protein trpH [Cronobacter turicensis z3032]
          Length = 298

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          L  H++ S  +G L+   ++ +        +AITD +         Q+   AG+
Sbjct: 18 LHSHTTAS--DGLLTPEQLVHRAVEMGIHTLAITDHDTTAGLPAAHQEIKHAGL 69


>gi|20807816|ref|NP_622987.1| metal-dependent phosphoesterase [Thermoanaerobacter tengcongensis
          MB4]
 gi|254479233|ref|ZP_05092578.1| putative PHP domain protein [Carboxydibrachium pacificum DSM
          12653]
 gi|20516375|gb|AAM24591.1| predicted metal-dependent phosphoesterases (PHP family)
          [Thermoanaerobacter tengcongensis MB4]
 gi|214034834|gb|EEB75563.1| putative PHP domain protein [Carboxydibrachium pacificum DSM
          12653]
          Length = 308

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F  L +HS  S  +G  S   ++    A     IA+TD + +    E  + +   GI+ I
Sbjct: 27 FADLHMHSKAS--DGTNSPREVVRLAKAHGLSCIALTDHDTVDGLQEAIEASFELGIEVI 84

Query: 71 IGCQLDIDMQD 81
           G + +   +D
Sbjct: 85 PGIEFNCYYKD 95


>gi|66046815|ref|YP_236656.1| phosphoesterase PHP, N-terminal:PHP, C-terminal [Pseudomonas
          syringae pv. syringae B728a]
 gi|63257522|gb|AAY38618.1| Phosphoesterase PHP, N-terminal:PHP, C-terminal [Pseudomonas
          syringae pv. syringae B728a]
 gi|330972286|gb|EGH72352.1| phosphoesterase PHP [Pseudomonas syringae pv. aceris str.
          M302273PT]
          Length = 287

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + 
Sbjct: 3  VDLHCHSTAS--DGALSPTALVARAHENGVRVLSLTDHDTLEGLEEARAAAHSLGMQLVN 60

Query: 72 GCQLDIDMQ 80
          G +L     
Sbjct: 61 GVELSCTWG 69


>gi|302668626|ref|YP_003833074.1| DNA polymerase III-associated protein [Butyrivibrio proteoclasticus
           B316]
 gi|302397590|gb|ADL36492.1| DNA polymerase III-associated protein [Butyrivibrio proteoclasticus
           B316]
          Length = 332

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 59/145 (40%), Gaps = 11/145 (7%)

Query: 302 DIQKEEENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
           D+   E+    L +  +  +  R     +++ Y      +R+  EL  I +   +  F++
Sbjct: 4   DLTYTEQAYIKLEHLCITRIYDRYNDNDLSEAY------ERMKKELAAIKKKGTAPLFIV 57

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP--LRFSLLFERFLNPDRMSMPD 417
           V + +      +      RG    SV AY L I++IDP  +R  L  E     +      
Sbjct: 58  VYEALCGVGAKHEKFSL-RGDTGSSVVAYLLDISEIDPVRIRPRLYSEFCFGLNGEENLS 116

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHER 442
            +I+  +    ++++Y ++  G  R
Sbjct: 117 IEINVTRKLYRKLVKYFEHYNGDAR 141


>gi|325295170|ref|YP_004281684.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM
          11699]
 gi|325065618|gb|ADY73625.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM
          11699]
          Length = 277

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G+LS   +++K        +++TD + +    E  ++    GI+ I G 
Sbjct: 11 LHCHSTAS--DGSLSPKKLVEKAKNIGISILSVTDHDTVSGVSEAVEEGKKLGIKVIPGI 68

Query: 74 QLDID 78
          ++  D
Sbjct: 69 EVTAD 73


>gi|148264848|ref|YP_001231554.1| phosphotransferase domain-containing protein [Geobacter
          uraniireducens Rf4]
 gi|146398348|gb|ABQ26981.1| PHP C-terminal domain protein [Geobacter uraniireducens Rf4]
          Length = 288

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          FV L +HSSYS  +G      ++   A     AIA+ D + +    E  +     G++ I
Sbjct: 4  FVDLHMHSSYS--DGIHKPEILVAMAAEKNLKAIALADHDAVEGIDEALEAGERLGVEVI 61

Query: 71 IGCQLDIDMQDNLKM 85
             +L ++ + +  +
Sbjct: 62 PAVELSVEFKKHHDV 76


>gi|307546302|ref|YP_003898781.1| hypothetical protein HELO_3712 [Halomonas elongata DSM 2581]
 gi|307218326|emb|CBV43596.1| K07053 [Halomonas elongata DSM 2581]
          Length = 320

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          L +HS+ S  +GALS   +++  AA     +A+TD + +             G+
Sbjct: 37 LHMHSTAS--DGALSPEALVEACAARGLTHMALTDHDTVAGVERARAAGERHGV 88


>gi|51246088|ref|YP_065972.1| hypothetical protein DP2236 [Desulfotalea psychrophila LSv54]
 gi|50877125|emb|CAG36965.1| hypothetical protein DP2236 [Desulfotalea psychrophila LSv54]
          Length = 289

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          L VHSS+S  +G+++   +++        A++ITD +N+ S  E        G+
Sbjct: 5  LHVHSSFS--DGSMTPTELVELAKRKGLHALSITDHDNILSVSEALCAGKQYGL 56


>gi|84686147|ref|ZP_01014042.1| putative dna polymerase iii alpha chain protein [Maritimibacter
            alkaliphilus HTCC2654]
 gi|84665674|gb|EAQ12149.1| putative dna polymerase iii alpha chain protein [Rhodobacterales
            bacterium HTCC2654]
          Length = 141

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 11/69 (15%)

Query: 973  PILRKMG---------IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            P+L + G            +        G  + +A +V+ +Q+  T  G  + ++T  + 
Sbjct: 5    PLLSRFGPRDWPRPPHAVPHRMLDRPHEGARVTVAGLVLVRQRPGTANG--VVFITLEDE 62

Query: 1024 AKEYEANFF 1032
                    +
Sbjct: 63   TGIANIVVW 71


>gi|307297798|ref|ZP_07577604.1| PHP domain protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306917058|gb|EFN47440.1| PHP domain protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 280

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          FV    HS +S  +G  S+  I+ K A      +++TD + L    E  +    AGI+ I
Sbjct: 2  FVDFHCHSDHS--DGTDSVAAIVQKAANKGISILSVTDHDTLAGQNEARELCLRAGIKYI 59

Query: 71 IGCQLDIDMQDNLKMTNQG 89
           G ++  D  + L +   G
Sbjct: 60 RGVEISCDFHETLDVLGYG 78


>gi|126462759|ref|YP_001043873.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Rhodobacter
            sphaeroides ATCC 17029]
 gi|221639781|ref|YP_002526043.1| Nucleic acid binding, OB-fold, tRNA/helicase-type [Rhodobacter
            sphaeroides KD131]
 gi|126104423|gb|ABN77101.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Rhodobacter
            sphaeroides ATCC 17029]
 gi|221160562|gb|ACM01542.1| Nucleic acid binding, OB-fold, tRNA/helicase-type [Rhodobacter
            sphaeroides KD131]
          Length = 140

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                      G  + +A +V+ +Q+  T KG  + ++T  +         +
Sbjct: 29   PAGRLNEPPSGARVAVAGLVLVRQRPGTAKG--VIFLTLEDETGVVNVVVW 77


>gi|289759529|ref|ZP_06518907.1| DNA polymerase subunit III (alpha) dnaE2 [Mycobacterium
          tuberculosis T85]
 gi|289715093|gb|EFD79105.1| DNA polymerase subunit III (alpha) dnaE2 [Mycobacterium
          tuberculosis T85]
          Length = 131

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 3  QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQ 40
          + +  S ++  L  HS+YS L+GA +   ++++ A   
Sbjct: 50 ERVGSSVAYAELHAHSAYSFLDGASTPEELVEEAAPAG 87


>gi|296134084|ref|YP_003641331.1| PHP domain protein [Thermincola sp. JR]
 gi|296032662|gb|ADG83430.1| PHP domain protein [Thermincola potens JR]
          Length = 287

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L VH++ S  +G L+   ++         A+AITD + +    E  ++A   G + I 
Sbjct: 8  LHVHTTAS--DGTLTPAELIRYAKGRNLAAVAITDHDTIDGLPEALKEAKQQGFELIP 63


>gi|215447692|ref|ZP_03434444.1| error-prone DNA polymerase [Mycobacterium tuberculosis T85]
          Length = 116

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 3  QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQ 40
          + +  S ++  L  HS+YS L+GA +   ++++ A   
Sbjct: 35 ERVGSSVAYAELHAHSAYSFLDGASTPEELVEEAAPAG 72


>gi|197335981|ref|YP_002155837.1| PHP domain containing protein [Vibrio fischeri MJ11]
 gi|197317471|gb|ACH66918.1| PHP domain containing protein [Vibrio fischeri MJ11]
          Length = 279

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 3/117 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP-IIG 72
           L  H++ S  +G LS   ++++  +     +AITD +++    E         +   +I 
Sbjct: 5   LHSHTTAS--DGRLSPTELVERAVSFDVKVLAITDHDSVAGLDEAHAAIKEQNLPLQLID 62

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
                 +  N  +   G       P +V L+   E  +    +     L   G    
Sbjct: 63  GIEISTLWSNKDIHVVGLNLDIHHPDLVELIKNQEARRDARAIKMAERLEKAGYGGA 119


>gi|270160109|ref|ZP_06188765.1| PHP domain protein [Legionella longbeachae D-4968]
 gi|289165113|ref|YP_003455251.1| TrpH protein [Legionella longbeachae NSW150]
 gi|269988448|gb|EEZ94703.1| PHP domain protein [Legionella longbeachae D-4968]
 gi|288858286|emb|CBJ12154.1| putative TrpH protein [Legionella longbeachae NSW150]
          Length = 279

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L  HS++S  +GAL+   ++ K    +   +++TD + +       Q A    I+ I 
Sbjct: 4  LHCHSNFS--DGALTPKALIQKAQNQKIRCLSLTDHDTVAGYPGLLQAATNTSIRIIN 59


>gi|289675279|ref|ZP_06496169.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv.
          syringae FF5]
          Length = 41

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 24/36 (66%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIA 45
          SFVHL++H+ YSL++G + +  ++  +     PA+A
Sbjct: 4  SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVA 39


>gi|254168402|ref|ZP_04875247.1| hypothetical protein ABOONEI_324 [Aciduliprofundum boonei T469]
 gi|289595773|ref|YP_003482469.1| PHP domain protein [Aciduliprofundum boonei T469]
 gi|197622683|gb|EDY35253.1| hypothetical protein ABOONEI_324 [Aciduliprofundum boonei T469]
 gi|289533560|gb|ADD07907.1| PHP domain protein [Aciduliprofundum boonei T469]
          Length = 216

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          V +  HS+YS  +G + + ++L +       AIAITD N +  AL    KA   GI
Sbjct: 3  VDMHTHSAYSP-DGKVPIKDMLKRAKKIGLGAIAITDHNEIKGAL----KAKKLGI 53


>gi|297617240|ref|YP_003702399.1| PHP domain protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145077|gb|ADI01834.1| PHP domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 319

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 67/176 (38%), Gaps = 18/176 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L VHS+ S  +G L+   ++++  A     +A+TD + +         A A       I 
Sbjct: 18  LHVHSTAS--DGLLTPPELVEEAVAAGLEGMALTDHDTVAGVEAAWAYARARHSSFWFIP 75

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI--VLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I         + ++          P +  +  +        +QR +++V+++  +    
Sbjct: 76  GIEMNTDVGPHEVHVLGYFIDPRYEPLLNRLEEIRQAR----FQRNLKMVAKLNAMGY-- 129

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
              +I +  + E+   GLI     +   +++ + F+  +  EK +   K  +  R 
Sbjct: 130 ---KISVERVSELAQGGLIGRPHIAQALMEKGYVFSIREAFEKLIGQGKPAYVPRY 182


>gi|295697614|ref|YP_003590852.1| PHP domain protein [Bacillus tusciae DSM 2912]
 gi|295413216|gb|ADG07708.1| PHP domain protein [Bacillus tusciae DSM 2912]
          Length = 285

 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 38/135 (28%), Gaps = 10/135 (7%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---IQ 68
           V L  H+  S  + + S+  ++ +        +AITD +         +   A G   + 
Sbjct: 4   VDLHCHTRMS--DSSRSIEEVIARAKEVGVDQLAITDHDTTAGLNRAIEIGRAQGVNIVP 61

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I     D        +      P       +        ++   E+V ++         
Sbjct: 62  GIEISAYDFARGRRAHLLGLYVEPGHKALESLCRPMRERRHRASFEMVGKLQRAGY---- 117

Query: 129 VRICLSWLQEIGTEG 143
             I    +Q     G
Sbjct: 118 -EITWEEVQRYARGG 131


>gi|317472374|ref|ZP_07931699.1| PHP domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316900094|gb|EFV22083.1| PHP domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 296

 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS YS  +G      ++ K   +    +AI D N + +  +  + A   GI  I G 
Sbjct: 4  LHMHSYYSD-DGEFQPEELVQKCKEEGIRYMAIADHNCVRAVEKGRKAAQKEGIHFISGV 62

Query: 74 QLDIDMQ 80
          ++D   Q
Sbjct: 63 EIDCTFQ 69


>gi|291536057|emb|CBL09169.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Roseburia intestinalis M50/1]
          Length = 289

 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L VHS+ S  +G  +   ++ +       AIA+TD +      +    A  AGI+ I 
Sbjct: 6  VDLHVHSTES--DGTFTPTEVIAEAKNAGLSAIALTDHDTATGIRKAMGAAKEAGIELIP 63

Query: 72 GCQLDIDMQDNLKMTNQ 88
          G +L        K   +
Sbjct: 64 GIELSTAYTFPGKKQEK 80


>gi|289677278|ref|ZP_06498168.1| phosphoesterase PHP, N-terminal:PHP, C-terminal [Pseudomonas
           syringae pv. syringae FF5]
 gi|330897266|gb|EGH28685.1| phosphoesterase PHP [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 287

 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 2/132 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + 
Sbjct: 3   VDLHCHSTAS--DGALSPTALVTRAHENGVRVLSLTDHDTLEGLEEARAAAHSLGMQLVN 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L                          +    EG     E +SR   +     ++  
Sbjct: 61  GVELSCTWGGATIHILGYGFDTQAPALTEAISRLHEGRWLRAEEISRKLAIKGMPGALEG 120

Query: 132 CLSWLQEIGTEG 143
             +  QE+G  G
Sbjct: 121 ARAIQQELGDSG 132


>gi|192973057|gb|ACF06956.1| nucleic acid binding OB-fold tRNA/helicase type protein [uncultured
            Roseobacter sp.]
          Length = 130

 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 7/54 (12%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +        G  + +A +V+ +Q+  T  G  + ++T  +         +
Sbjct: 20   AALPHAMLELPPNGARVTVAGLVLVRQRPGTANG--VIFITLEDETGVCNVIVW 71


>gi|169839690|ref|ZP_02872878.1| DNA polymerase III alpha subunit [candidate division TM7
           single-cell isolate TM7a]
          Length = 63

 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 529 AAGIVIGDRP--LSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
             G+++  +   +    P+ R   D++S    T F+   +++  L+K D LG    T L+
Sbjct: 1   PGGMIVVPKDKSIYDFCPIQRPANDMKSTSKTTHFDYHVMDEQ-LVKLDILGHDDPTTLR 59


>gi|330980372|gb|EGH78485.1| phosphoesterase PHP [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 286

 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 2/132 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + 
Sbjct: 3   VDLHCHSTAS--DGALSPTALVTRAHENGVRVLSLTDHDTLEGLEEARAAAHSLGMQLVN 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L                          +    EG     E +SR   +     ++  
Sbjct: 61  GVELSCTWGGATIHILGYGFDTQAPALTEAISRLHEGRWLRAEEISRKLAIKGMPGALEG 120

Query: 132 CLSWLQEIGTEG 143
             +  QE+G  G
Sbjct: 121 ARAIQQELGDSG 132


>gi|156933737|ref|YP_001437653.1| hypothetical protein ESA_01563 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156531991|gb|ABU76817.1| hypothetical protein ESA_01563 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 292

 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          L  H++ S  +G L+   ++ +        +AITD +         ++   AG+
Sbjct: 12 LHSHTTAS--DGLLTPEQLVHRAVEMGIHTLAITDHDTTAGLPAAHEEIARAGL 63


>gi|160881560|ref|YP_001560528.1| phosphotransferase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160430226|gb|ABX43789.1| PHP domain protein [Clostridium phytofermentans ISDg]
          Length = 287

 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 50/122 (40%), Gaps = 11/122 (9%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +V L VH++ S  +G L+   +++     +  AIAITD + ++   E  + A A      
Sbjct: 3   YVDLHVHTNVS--DGTLTPTEVVNLAVQKKLAAIAITDHDTIYGIEEAKRAALAQ----- 55

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
                ++++   ++++ + K     +  + +          L +++S+       +    
Sbjct: 56  RENGYELELISGVEISAEYKKKDIHILGLFVNEKDPH----LQDILSKALKERDERNQKM 111

Query: 131 IC 132
           I 
Sbjct: 112 ID 113


>gi|70728988|ref|YP_258723.1| phosphotransferase domain-containing protein [Pseudomonas
           fluorescens Pf-5]
 gi|68343287|gb|AAY90893.1| PHP domain protein [Pseudomonas fluorescens Pf-5]
          Length = 292

 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 2/161 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +GAL+   ++ +        +++TD + L    E  Q A   G+Q + 
Sbjct: 9   VDLHCHSTAS--DGALAPAVLVARAYERGVRILSLTDHDTLEGLDEARQAAQQLGMQLVN 66

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L                       +  +    EG     E +SR   L     ++  
Sbjct: 67  GVELSCTWGGATIHVLGYGFDTQAPALVQAIEKLHEGRWLRSEEISRKLALKGMPGALEG 126

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             +  QE+G  G        +  + RA F      A ++ L
Sbjct: 127 ARAIQQELGDSGNAPARPHFADYLVRAGFVKDRAEAFRKWL 167


>gi|147920138|ref|YP_686098.1| metal-dependent phosphoesterase [uncultured methanogenic archaeon
          RC-I]
 gi|110621494|emb|CAJ36772.1| putative metal-dependent phosphoesterase (PHP family) [uncultured
          methanogenic archaeon RC-I]
          Length = 220

 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L VHS+YS  +G  S+  IL    A     +AITD +    
Sbjct: 6  LHVHSNYSP-DGHSSVEEILKAAKARGLDGVAITDHDTTAG 45


>gi|254519453|ref|ZP_05131509.1| phosphotransferase domain-containing protein [Clostridium sp.
          7_2_43FAA]
 gi|226913202|gb|EEH98403.1| phosphotransferase domain-containing protein [Clostridium sp.
          7_2_43FAA]
          Length = 274

 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
          ++  L +HSSYS  +G+++   I+DK  +    +I+ITD +++ 
Sbjct: 2  NYADLHIHSSYS--DGSMTPEEIVDKAKSLGVKSISITDHDSIA 43


>gi|59711641|ref|YP_204417.1| hypothetical protein VF_1034 [Vibrio fischeri ES114]
 gi|59479742|gb|AAW85529.1| conserved protein [Vibrio fischeri ES114]
          Length = 279

 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 65/196 (33%), Gaps = 17/196 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP-IIG 72
           L  H++ S  +G LS   ++++  +     +AITD +++    E         +   +I 
Sbjct: 5   LHSHTTAS--DGRLSPTELVERAVSFDVKVLAITDHDSVAGLDEAHAAIKDQNLPLQLIN 62

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                 +  N  +   G       P ++ L+   E  +     +     L++        
Sbjct: 63  GIEISTLWSNKDIHVVGLNLDIHHPDLIELIKNQEARRD-ARAIKMAERLEKAGY----- 116

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
                E   EG   L G   G + RA F     V E    T + +F   L  N   +   
Sbjct: 117 -----EGALEGAKALAG--DGTLTRAHF-GKWLVDEGHAKTMQAVFKKFLTRNNIGYVPP 168

Query: 193 DRYRESQVVQLAYTHE 208
           D     + V + +   
Sbjct: 169 DWCTIEEAVNVIHKAG 184


>gi|223939372|ref|ZP_03631251.1| PHP domain protein [bacterium Ellin514]
 gi|223891976|gb|EEF58458.1| PHP domain protein [bacterium Ellin514]
          Length = 282

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F  L +H+++S  +G  +   +       +  A+A+TD + L             GI+ +
Sbjct: 2  FADLHLHTNFS--DGTFTPEELAMHGKRHELAAMALTDHDTLEGCERMGAACETNGIEFV 59

Query: 71 IGCQLDIDMQ 80
           G +L  +++
Sbjct: 60 TGTELTAELR 69


>gi|301156292|emb|CBW15763.1| conserved protein [Haemophilus parainfluenzae T3T1]
          Length = 275

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L    ++ +        +A+ D + +    E   +A   GI+ I G 
Sbjct: 7  LHCHSTAS--DGVLMPTELVQRAHEQGVNVLALCDHDTVMGIDEAKLEADKLGIELINGV 64

Query: 74 QLDIDMQDN 82
          ++  + +  
Sbjct: 65 EISTNWEGR 73


>gi|220928267|ref|YP_002505176.1| PHP domain protein [Clostridium cellulolyticum H10]
 gi|219998595|gb|ACL75196.1| PHP domain protein [Clostridium cellulolyticum H10]
          Length = 285

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L  HS+ S  +G++S   ++    A    AIA+TD + +    E   +   +GI+ I 
Sbjct: 7  LHTHSTAS--DGSMSPAELVRHAKAIGLAAIALTDHDTVDGVEEAINEGKRSGIEVIP 62


>gi|152985099|ref|YP_001347307.1| hypothetical protein PSPA7_1926 [Pseudomonas aeruginosa PA7]
 gi|150960257|gb|ABR82282.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 295

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 83/294 (28%), Gaps = 52/294 (17%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +G L+   ++ +        +A+TD + L    E    A   GI+ + 
Sbjct: 3   VDLHCHSTAS--DGVLAPAALVQRAHEKGVGLLALTDHDTLEGLPEAHAAATRLGIELVN 60

Query: 72  GCQLDIDMQD-------------------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
           G +L                           +  +QG+          L      G    
Sbjct: 61  GVELSCTWGGATIHVLGYGFALEAEPLRRATEALHQGRWARAEEIDRRLAAKGMPGALHG 120

Query: 113 IELVSRMYLLDQGKQSVRICLS-------WLQEIGTEGLIMLTGGSSGPIDRAF-----F 160
              + R  L D G    R   +       W+++        L  G  G + + +      
Sbjct: 121 ARAIQRA-LGDSGNAPARPHFAEFLVQGGWVKDRAEAFRKWLGAGKLGDVKQHWPTLEEV 179

Query: 161 FNSSQVAEKRLLTFKKLFGD-------RL---YVNLQRH------RGYDRYRESQVVQLA 204
               + A   +        D       RL   ++    H            +   +  LA
Sbjct: 180 VGCLREARAWISLAHPYHYDFTRTKRRRLVADFLQAGGHAIEVVNGVQPAEQVGTLSILA 239

Query: 205 YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
               L + A ++  F +  D+    +  AV     V      R   D    + +
Sbjct: 240 REFGLMVTAGSD--FHAPGDWSELGMYRAVPEDLPVMWPRFARHFRDTERHSEA 291


>gi|94499322|ref|ZP_01305860.1| TrpH [Oceanobacter sp. RED65]
 gi|94428954|gb|EAT13926.1| TrpH [Oceanobacter sp. RED65]
          Length = 276

 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 6/172 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +G LS  +++++        +A+TD + +    E  Q A   G++ I G 
Sbjct: 5   LHCHSLRS--DGQLSPTDLVNRAYEQGVTHLALTDHDTINGLQEAKQAAKPLGLEIIHG- 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                + + + +   G       P+++  +   E   RL    +    L+  KQ      
Sbjct: 62  IEISTVWNGMGIHVVGLNFDAEHPAMLAAIERQEN-CRLERAKTIAKKLE--KQGAEGIW 118

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
              Q++     I     +   ID     N +   ++ L   K      L+  
Sbjct: 119 EAAQKVANGAQIGRPHFAQALIDMGKVNNMAAAFKRYLGAGKSGDVKTLWPE 170


>gi|330889221|gb|EGH21882.1| phosphotransferase domain-containing protein [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 287

 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 2/161 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + 
Sbjct: 3   VDLHCHSTAS--DGALSPTALVARAHENGVRVLSLTDHDTLEGLEEARAVAHSLGMQLVN 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L                          +    EG     E +SR   +     ++  
Sbjct: 61  GVELSCTWGGATIHILGYGFDTQAPALTEAISRLHEGRWLRAEEISRKLAIKGMPGALEG 120

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             +  QE+G  G        +  + RA F      A ++ L
Sbjct: 121 ARAIQQELGDSGNAPARPHFADFMVRAGFVKDRAEAFRKWL 161


>gi|301170154|emb|CBW29758.1| conserved protein [Haemophilus influenzae 10810]
          Length = 274

 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   +  +  A     +A+ D + +    E    A   GI+ I G 
Sbjct: 7  LHCHSTAS--DGVLSPTELAHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGV 64

Query: 74 QLDIDMQDN 82
          ++  + +  
Sbjct: 65 EISTNWEGR 73


>gi|288573199|ref|ZP_06391556.1| PHP domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568940|gb|EFC90497.1| PHP domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 275

 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 3/102 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HSS S  +G +  + +           +++TD + +     F+++    G++ + 
Sbjct: 4   VDLHTHSSCS--DGTVPPDKLAKLAHRSGISVVSLTDHDTVDGVPVFTRECRRLGVKSLS 61

Query: 72  GCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRL 112
           G +L  D    + +   G    FP +  ++  +      + L
Sbjct: 62  GVELSADYPTTMHILGYGFDLAFPELVEVLQDLRDHRERRNL 103


>gi|225448307|ref|XP_002264419.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 450

 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 78/238 (32%), Gaps = 13/238 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +G LS + ++++   +    +A+TD + +    E  + A   G++ I G 
Sbjct: 90  LHSHSIRS--DGFLSPSKVVERAHGNGVKVLALTDHDTMSGIPEALEAARKFGMRIIPGV 147

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++        +  ++         S        E  + L  +    YL  +        L
Sbjct: 148 EISTMFSPRGESGSEEPVHVLAYYSSCGPTRCEELEKFLANIRDGRYLRAKNMVLKLNNL 207

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-VNLQRHRGY 192
               +      I   G + G +  A       V    +   ++ F   LY        G 
Sbjct: 208 KLPLKWEHVAKIAGKGVAPGRLHVARAM----VEAGHVENLRQAFARYLYDGGPAYSTGS 263

Query: 193 DRYRESQVVQLAYTHELPLVAT-----NNSLFLSE-EDYEAHDVLMAVAHSTVVSQKD 244
           +   E  V  +  T  + ++A      N    +   +D   H + +  +   + +  D
Sbjct: 264 EPQAEEAVKLICETGGVAVLAHPWALKNPVTIVRRLKDAGLHGIEVYRSDGKLAAYND 321


>gi|37522485|ref|NP_925862.1| hypothetical protein gll2916 [Gloeobacter violaceus PCC 7421]
 gi|35213486|dbj|BAC90857.1| gll2916 [Gloeobacter violaceus PCC 7421]
          Length = 263

 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          V L  H+ +S  +G  S   ++ +  A     +AITD N++  
Sbjct: 3  VGLHNHTCFS--DGRYSPAALVAQAEALGYERLAITDHNSVAG 43


>gi|312962722|ref|ZP_07777211.1| PHP-like protein [Pseudomonas fluorescens WH6]
 gi|311283097|gb|EFQ61689.1| PHP-like protein [Pseudomonas fluorescens WH6]
          Length = 287

 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 2/132 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +GAL+   ++ +        +A+TD + L    E    A A G+Q + 
Sbjct: 3   VDLHCHSTAS--DGALAPAVLVARAFEKGVRVLALTDHDTLEGLDEARTAAHALGMQLVN 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L                       +  +    +G     E +SR   L     ++  
Sbjct: 61  GVELSCTWGGATIHILGYGFDQTAPALVQAIADLHDGRWLRSEEISRKLSLKGMPNALDG 120

Query: 132 CLSWLQEIGTEG 143
             +  QE+G  G
Sbjct: 121 ARAIQQELGDSG 132


>gi|317051784|ref|YP_004112900.1| PHP domain-containing protein [Desulfurispirillum indicum S5]
 gi|316946868|gb|ADU66344.1| PHP domain protein [Desulfurispirillum indicum S5]
          Length = 287

 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          L  HS+ S  +G+ S   +  + A     A+A+TD + +     F Q     G++ I
Sbjct: 5  LHAHSTAS--DGSDSPAMLASRAAEAHLSALALTDHDTVAGVEPFMQACALCGVEGI 59


>gi|225412421|ref|ZP_03761610.1| hypothetical protein CLOSTASPAR_05644 [Clostridium asparagiforme
          DSM 15981]
 gi|225042056|gb|EEG52302.1| hypothetical protein CLOSTASPAR_05644 [Clostridium asparagiforme
          DSM 15981]
          Length = 318

 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS  S+ +G L    ++ +  +    A A+TD N++       ++A   GI+   G 
Sbjct: 21 LHMHSVISI-DGELEPEEVIRRAVSRGIRAAALTDHNSVRGVSRAWEEAARLGIRLAKGV 79

Query: 74 QLDIDMQDN 82
          +LD  + + 
Sbjct: 80 ELDCRLGER 88


>gi|167561430|ref|ZP_02354346.1| error-prone DNA polymerase [Burkholderia oklahomensis EO147]
          Length = 104

 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 2/50 (4%)

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                      G   R   +V ++Q   T KG  + +VT  +         
Sbjct: 1    SAAALRDRRNGRLARACGLVTARQMPGTAKG--VLFVTLEDETGCVNVIV 48


>gi|326791646|ref|YP_004309467.1| PHP domain protein [Clostridium lentocellum DSM 5427]
 gi|326542410|gb|ADZ84269.1| PHP domain protein [Clostridium lentocellum DSM 5427]
          Length = 284

 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VHS+ S  +G LS   I     A    AIA+TD + +    E  +K    G+  I G 
Sbjct: 6  LHVHSTAS--DGTLSPQEIALYAKAKGLSAIALTDHDTVAGVNECMKKGLEIGVIVIPGI 63

Query: 74 QLDIDM 79
          +   D 
Sbjct: 64 ECSADY 69


>gi|257467828|ref|ZP_05631924.1| PHP domain protein [Fusobacterium ulcerans ATCC 49185]
 gi|317062117|ref|ZP_07926602.1| phosphotransferase domain-containing protein [Fusobacterium
          ulcerans ATCC 49185]
 gi|313687793|gb|EFS24628.1| phosphotransferase domain-containing protein [Fusobacterium
          ulcerans ATCC 49185]
          Length = 276

 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V + +H+  S  +G  +   ++ +  +     IAITD + +    E  + A   GI+ I 
Sbjct: 3  VDMHIHTIAS--DGTFTPEEVVKRAKSFGMKTIAITDHDTVDGLAEGKKTADEVGIEFIQ 60

Query: 72 GCQLDIDMQD 81
          G ++  ++ +
Sbjct: 61 GIEISCNVDN 70


>gi|54297352|ref|YP_123721.1| hypothetical protein lpp1397 [Legionella pneumophila str. Paris]
 gi|53751137|emb|CAH12548.1| hypothetical protein lpp1397 [Legionella pneumophila str. Paris]
          Length = 279

 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L  HSS+S  +GAL+   ++ + +  Q   +++TD + +         A    I+ + 
Sbjct: 4  LHCHSSFS--DGALTPEELIKRASTLQVQCLSLTDHDTVAGYDALYGAAIHTNIEIVK 59


>gi|282163333|ref|YP_003355718.1| putative phosphatase, PHP family [Methanocella paludicola SANAE]
 gi|282155647|dbj|BAI60735.1| putative phosphatase, PHP family [Methanocella paludicola SANAE]
          Length = 219

 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 2/95 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H+ YS  +GA+   + +          IAITD + +   LE  +     G+  I+G 
Sbjct: 6   LHMHTIYS-RDGAIKPADAIRIAKKRGLDGIAITDHDTIRGGLEALKL-KTEGLDIIVGA 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           ++  D  D + +    +        ++  + +  G
Sbjct: 64  EIKTDRGDVIGLFLNEEIRERDHMEVIDAIRSQGG 98


>gi|170717599|ref|YP_001784682.1| phosphotransferase domain-containing protein [Haemophilus somnus
          2336]
 gi|168825728|gb|ACA31099.1| PHP domain protein [Haemophilus somnus 2336]
          Length = 275

 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  S+ +G LS   I+ +        +A+TD + +    +   +A   GI  I G 
Sbjct: 7  LHCHS--SISDGTLSPQEIVIRAHQQGVNVLALTDHDTIAGLSQARTQAEQLGISLINGV 64

Query: 74 QLDIDMQD 81
          ++    ++
Sbjct: 65 EISTSWEN 72


>gi|303328152|ref|ZP_07358591.1| PHP domain protein [Desulfovibrio sp. 3_1_syn3]
 gi|302861978|gb|EFL84913.1| PHP domain protein [Desulfovibrio sp. 3_1_syn3]
          Length = 285

 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 7/98 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+  S  +G  S + ++ K       A+A+TD + +    E  +     GI+ I GC
Sbjct: 6   LHTHTLAS--DGTDSPSALVQKAHTAGLAAVAVTDHDTVSGLDEAEEAGRDLGIKVIRGC 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           +L    +           P    P          GY R
Sbjct: 64  ELSTHTEYGEVHILGLWLPRDAAPL-----QDQLGYLR 96


>gi|167746211|ref|ZP_02418338.1| hypothetical protein ANACAC_00916 [Anaerostipes caccae DSM 14662]
 gi|167654204|gb|EDR98333.1| hypothetical protein ANACAC_00916 [Anaerostipes caccae DSM 14662]
          Length = 302

 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 60/180 (33%), Gaps = 6/180 (3%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           EK  + + L +HS  S  +G L    +L         A A+TD + +             
Sbjct: 21  EKGQTMIDLHLHSDAS--DGTLKPEEVLRAAKEKGLYAFALTDHDTVAGIPPILHSGELT 78

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           GI  + G +L  + + +                +    +T EG +R     +   +    
Sbjct: 79  GIHFMPGIELSCEAEKHEIHILGYHIDICNQNLL----NTLEGLRRGRRQRNLSMIEKFR 134

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
           +  + + L  L     + +I     +   I+  +  N  Q  +K +    + +  + Y  
Sbjct: 135 EDGIPMTLEKLLHGNEQTVITRAHFARVLIEEGYCANKEQAFKKYVGDGCRYYIPKPYFA 194


>gi|300087150|ref|YP_003757672.1| PHP domain-containing protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299526883|gb|ADJ25351.1| PHP domain protein [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 279

 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 70/174 (40%), Gaps = 17/174 (9%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-AGIQPIIG 72
           L VHS+ S  +G LS   ++ K  A     +A+TD + +F   E  ++      +  I G
Sbjct: 7   LHVHSNAS--DGVLSPAEVVRKAVAQGVTYLALTDHDTVFGIEEAVREVRRFQNLTFIPG 64

Query: 73  CQLDIDMQDNL-----KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            ++  D++           +   T F +    +       G   + +L +    LD G+ 
Sbjct: 65  VEISTDVEAGDVHILGYFVDWKDTEFISKLQTMRESRVERGQAMVSKLSALGMPLDWGR- 123

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                   +Q+I  + +I     +   +++++  N S+  EK L   K  + +R
Sbjct: 124 --------IQKIAGDAVIGRPHIAQAMLEKSYINNFSEAFEKYLGRGKPAYAER 169


>gi|77165847|ref|YP_344372.1| PHP family metal-dependent phosphoesterase [Nitrosococcus oceani
           ATCC 19707]
 gi|254434372|ref|ZP_05047880.1| hypothetical protein NOC27_1303 [Nitrosococcus oceani AFC27]
 gi|76884161|gb|ABA58842.1| metal-dependent phosphoesterases (PHP family) [Nitrosococcus oceani
           ATCC 19707]
 gi|207090705|gb|EDZ67976.1| hypothetical protein NOC27_1303 [Nitrosococcus oceani AFC27]
          Length = 278

 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 64/208 (30%), Gaps = 19/208 (9%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L    ++ + A      +A+TD +      E S  A +  +  I G 
Sbjct: 8   LHTHSTVS--DGTLKPAELVRRAADQGVNVLALTDHDCTAGLTEASAVAESLALNLIPGV 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++ +           G       P +        G Q+L     R Y  +      R   
Sbjct: 66  EISVTWGGRTVHI-LGLGINQEEPGL------QAGLQKL-----RAYRDE----RAREIA 109

Query: 134 SWLQEIGTEGLIMLTGG-SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
             LQ+ G EG +      + G I     F    VA+      + +F   L      H   
Sbjct: 110 HGLQKAGIEGALEGASCYAQGSILSRTHFARFLVAKGYAKNTQAVFKRYLVQGKPGHVSG 169

Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFL 220
                 Q V          V  + + + 
Sbjct: 170 CWTTLEQAVTWIRQAGGCAVVAHPARYH 197


>gi|260548776|ref|ZP_05822998.1| metal-dependent phosphoesterase [Acinetobacter sp. RUH2624]
 gi|260407944|gb|EEX01415.1| metal-dependent phosphoesterase [Acinetobacter sp. RUH2624]
          Length = 283

 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++      +   +A+TD + +       + A A  ++ I G 
Sbjct: 6  LHTHSNIS--DGTLSPELLVQAAVDVKLHTLALTDHDTMDGLQRAKKAAQAHDLKIISGV 63


>gi|18397349|ref|NP_565360.1| PHP domain-containing protein [Arabidopsis thaliana]
 gi|20197611|gb|AAD15431.2| expressed protein [Arabidopsis thaliana]
 gi|20197796|gb|AAM15252.1| expressed protein [Arabidopsis thaliana]
 gi|330251170|gb|AEC06264.1| Polymerase/histidinol phosphatase-like protein [Arabidopsis
           thaliana]
          Length = 434

 Score = 59.2 bits (142), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            L  HS+ S  +G LS + ++++   +    +++TD + +    E  +     GI+ I 
Sbjct: 70  ELHSHSNRS--DGFLSPSKVVERAYNNGVKVLSLTDHDTMAGVPEAVEAGRRFGIKIIP 126


>gi|15450377|gb|AAK96482.1| At2g13860/F13J11.19 [Arabidopsis thaliana]
 gi|20466107|gb|AAM19975.1| At2g13860/F13J11.19 [Arabidopsis thaliana]
          Length = 433

 Score = 59.2 bits (142), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            L  HS+ S  +G LS + ++++   +    +++TD + +    E  +     GI+ I 
Sbjct: 69  ELHSHSNRS--DGFLSPSKVVERAYNNGVKVLSLTDHDTMAGVPEAVEAGRRFGIKIIP 125


>gi|292669737|ref|ZP_06603163.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Selenomonas noxia ATCC 43541]
 gi|292648534|gb|EFF66506.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Selenomonas noxia ATCC 43541]
          Length = 276

 Score = 59.2 bits (142), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          L +H+++S  +G  +   I++   A     IAITD +++    E  +
Sbjct: 5  LHIHTTFS--DGRDTPEEIVEAAKAAGLRYIAITDHDSVEGVTELYE 49


>gi|251792527|ref|YP_003007253.1| fumarate hydratase [Aggregatibacter aphrophilus NJ8700]
 gi|247533920|gb|ACS97166.1| fumarate hydratase [Aggregatibacter aphrophilus NJ8700]
          Length = 275

 Score = 59.2 bits (142), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +        +A+TD + +    E  ++A   GIQ I G 
Sbjct: 6  LHCHSTAS--DGVLSPTEVVLRAYEKGVNVLALTDHDTVAGVSEARKQADLLGIQLINGV 63

Query: 74 QLDIDMQDN 82
          +L    ++ 
Sbjct: 64 ELSTLWENR 72


>gi|225375381|ref|ZP_03752602.1| hypothetical protein ROSEINA2194_01006 [Roseburia inulinivorans
          DSM 16841]
 gi|225212870|gb|EEG95224.1| hypothetical protein ROSEINA2194_01006 [Roseburia inulinivorans
          DSM 16841]
          Length = 281

 Score = 59.2 bits (142), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VHS+ S  +G L+  +++ +       A A+TD +      +    A +AGI+ I G 
Sbjct: 8  LHVHSTES--DGTLTPEDLVAEAKKVGLAAFALTDHDTCQGVGKAMPCAASAGIELIPGI 65

Query: 74 QLDIDMQ 80
          +L  D  
Sbjct: 66 ELSTDYH 72


>gi|330953599|gb|EGH53859.1| phosphoesterase PHP [Pseudomonas syringae Cit 7]
          Length = 287

 Score = 59.2 bits (142), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 2/132 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + 
Sbjct: 3   VDLHCHSTAS--DGALSPMALVARAHENGVRVLSLTDHDTLEGLEEARAAAHSLGMQLVN 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L                          +    EG     E +SR   +     ++  
Sbjct: 61  GVELSCTWGGATIHILGYGFDTQAPALTEAIGRLHEGRWLRAEEISRKLAIKGMPGALEG 120

Query: 132 CLSWLQEIGTEG 143
             +  QE+G  G
Sbjct: 121 ARAIQQELGDSG 132


>gi|167757633|ref|ZP_02429760.1| hypothetical protein CLORAM_03183 [Clostridium ramosum DSM 1402]
 gi|167702630|gb|EDS17209.1| hypothetical protein CLORAM_03183 [Clostridium ramosum DSM 1402]
          Length = 296

 Score = 59.2 bits (142), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 15/186 (8%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +EK   ++ L +HS YS  +G  +   ++++        +AI D N++ +  E  + A  
Sbjct: 1   MEK---YIDLHMHSKYSD-DGEFTPTQLVEQCHKAGIKVMAIADHNSVKAIDEAKEAAAK 56

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             I+ I   ++D       K  N     +         V+  E         S+  +   
Sbjct: 57  LNIKYIPSVEIDCTY----KGINLHVLGYGVDYHHADFVTLEENVLNQELACSKEKVKLT 112

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG--DRL 182
                 +  + L  +   G  + TG   G +      +        L  ++      D  
Sbjct: 113 NMLGFDVDQAALDALSDNG--VYTGEMFGEV---LLNDQRYNENSLLKPYRSGGERSDNP 167

Query: 183 YVNLQR 188
           YVN   
Sbjct: 168 YVNFYW 173


>gi|307822361|ref|ZP_07652593.1| PHP domain protein [Methylobacter tundripaludum SV96]
 gi|307736927|gb|EFO07772.1| PHP domain protein [Methylobacter tundripaludum SV96]
          Length = 277

 Score = 59.2 bits (142), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 12/173 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +GALS   ++ +       ++A+TD + +    E    A AAGI+ I G 
Sbjct: 7   LHCHSTAS--DGALSPTAVVQRAHGCGVTSLALTDHDTVSGLNEAQAAADAAGIKLIPGI 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-RMYLLDQGKQSVRIC 132
           +L    Q N      G    P  P +      AE  + L  + + R   +    +  RI 
Sbjct: 65  ELSTSWQ-NKCFHIVGLGIDPAYPPL------AEATRNLQTMRTERAEKIADKLEKKRIP 117

Query: 133 --LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             L  +++   EG+I  T  +   + +       +  ++ L   K  F    +
Sbjct: 118 GALEAVKKAAGEGMITRTHFADFLLSQFHVSTQQEAFDRYLGAGKAAFVPTTW 170


>gi|312796988|ref|YP_004029910.1| DNA polymerase III alpha subunit [Burkholderia rhizoxinica HKI 454]
 gi|312168763|emb|CBW75766.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia
            rhizoxinica HKI 454]
          Length = 100

 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G   R   +V  +Q+  T KG  + +VT  + +       +P
Sbjct: 2    QRYRDGQLARACGLVTVRQRPGTAKG--VLFVTLEDESGYTNVIIWP 46


>gi|284048372|ref|YP_003398711.1| PHP domain protein [Acidaminococcus fermentans DSM 20731]
 gi|283952593|gb|ADB47396.1| PHP domain protein [Acidaminococcus fermentans DSM 20731]
          Length = 277

 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 13/118 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA------GI 67
           L +H+++S  +G  +   I+ +  A    AIAITD +N    ++   +A          +
Sbjct: 5   LHIHTTFS--DGIYTPEKIVAQARASGITAIAITDHDN----IQAYNRAARTIHFRHLDL 58

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY-QRLIELVSRMYLLDQ 124
           + I G ++D D +                P +  +  T  G   R+ ++V R+  L  
Sbjct: 59  ELIRGVEIDTDYKGKDVHVLGYHFDPDNQPLLQAMAWTRVGRIARIRKIVERVNALGY 116


>gi|218780517|ref|YP_002431835.1| nucleic acid binding OB-fold tRNA/helicase-type [Desulfatibacillum
            alkenivorans AK-01]
 gi|218761901|gb|ACL04367.1| nucleic acid binding OB-fold tRNA/helicase-type [Desulfatibacillum
            alkenivorans AK-01]
          Length = 108

 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 23/61 (37%)

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +P + + G    +       G  ++    V+      T+ G R+ ++T  +    ++   
Sbjct: 2    EPEVWEKGCMESDRIRWCEDGRYVKACGRVIIIHTPPTKSGKRVMFITLEDARGLFDVTV 61

Query: 1032 F 1032
            F
Sbjct: 62   F 62


>gi|148358973|ref|YP_001250180.1| metal dependent phosphoesterase [Legionella pneumophila str.
          Corby]
 gi|296107022|ref|YP_003618722.1| metal dependent phosphoesterase [Legionella pneumophila 2300/99
          Alcoy]
 gi|148280746|gb|ABQ54834.1| metal dependent phosphoesterase [Legionella pneumophila str.
          Corby]
 gi|295648923|gb|ADG24770.1| metal dependent phosphoesterase [Legionella pneumophila 2300/99
          Alcoy]
          Length = 279

 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L  HSS+S  +GAL+   ++ + +  Q   +++TD + +         A    I+ + 
Sbjct: 4  LHCHSSFS--DGALTPEELIKRASTLQVQCLSLTDHDTIAGYDALYDAAIHTNIEIVK 59


>gi|222055485|ref|YP_002537847.1| PHP domain protein [Geobacter sp. FRC-32]
 gi|221564774|gb|ACM20746.1| PHP domain protein [Geobacter sp. FRC-32]
          Length = 280

 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+YS  +G      ++   AA     IA+ D + +    E  +   +  ++ I   
Sbjct: 4  LHIHSTYS--DGIYKPAELVAMAAAKGLKTIALADHDTVAGIDEALEAGQSRNVEVIPAV 61


>gi|15602481|ref|NP_245553.1| hypothetical protein PM0616 [Pasteurella multocida subsp.
          multocida str. Pm70]
 gi|12720889|gb|AAK02700.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 277

 Score = 58.8 bits (141), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +        +A+TD +      E    A    +  I G 
Sbjct: 7  LHCHSTAS--DGVLSPTEVVARAVEKGVNVLALTDHDTTAGLAEARLAAQQTDLTLISGV 64

Query: 74 QLDIDMQDN 82
          ++    ++ 
Sbjct: 65 EISTTWENR 73


>gi|168334757|ref|ZP_02692885.1| PHP domain protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 285

 Score = 58.8 bits (141), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 68/174 (39%), Gaps = 11/174 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L+   +     A    AIA+TD +      E  +     G++ I G 
Sbjct: 6   LHTHSTMS--DGTLTPRELAFYAKAKGLFAIALTDHDTTAGIAECIKAGNMVGLKVIPGI 63

Query: 74  QLDIDMQ--DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           ++       +   +         T+  ++  +      +  ++++ R+  L        I
Sbjct: 64  EISCKYHKIEIHLLGYYIDIENQTLQDVIAKILNERKARN-VKMIERLTELGY-----PI 117

Query: 132 CLSWLQEIGTEGLIMLTGGSSGP-IDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            +  L     E + +  G  +G  +++ +F N  +V EK L   +  + +R ++
Sbjct: 118 TMKDLNPNNDENMSITRGNVAGVLLEKGYFANREEVFEKCLRVGQPGYVEREFI 171


>gi|289177399|gb|ADC84645.1| PHP domain containing protein (TRPH) [Bifidobacterium animalis
           subsp. lactis BB-12]
          Length = 304

 Score = 58.8 bits (141), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 3/87 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+ +S  +G  +   ++ +  +     +AI D +      E  Q +    + P++  
Sbjct: 27  LHCHTVFS--DGTRTPREMVQEAKSLGLHGVAIADHDTTAGWEEAGQASHDLHL-PLMRG 83

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
                   N+ +        P    I 
Sbjct: 84  TEITAQDGNVSVHMLAYLYDPRNRHIC 110


>gi|219683322|ref|YP_002469705.1| PHP C-terminal domain protein [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|219620972|gb|ACL29129.1| PHP C-terminal domain protein [Bifidobacterium animalis subsp.
           lactis AD011]
          Length = 289

 Score = 58.8 bits (141), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 3/87 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+ +S  +G  +   ++ +  +     +AI D +      E  Q +    + P++  
Sbjct: 12  LHCHTVFS--DGTRTPREMVQEAKSLGLHGVAIADHDTTAGWEEAGQASHDLHL-PLMRG 68

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
                   N+ +        P    I 
Sbjct: 69  TEITAQDGNVSVHMLAYLYDPRNRHIC 95


>gi|84500008|ref|ZP_00998274.1| DNA polymerase III, alpha subunit, putative [Oceanicola batsensis
            HTCC2597]
 gi|84391942|gb|EAQ04210.1| DNA polymerase III, alpha subunit, putative [Oceanicola batsensis
            HTCC2597]
          Length = 146

 Score = 58.8 bits (141), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                        +G  + +A +V+ +Q+  T KG  + ++T  +         +
Sbjct: 25   ACLPAALLDRPPQGARVAVAGLVILRQRPGTAKG--VIFITLEDETGVVNVIVW 76


>gi|83589933|ref|YP_429942.1| PHP-like [Moorella thermoacetica ATCC 39073]
 gi|83572847|gb|ABC19399.1| PHP-like protein [Moorella thermoacetica ATCC 39073]
          Length = 280

 Score = 58.8 bits (141), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +G L    ++         A+ ITD + +    E        G++ I G 
Sbjct: 7  LHTHTTAS--DGQLCPAKMVRLARERGLTALGITDHDTVSGLAEALAAGREVGLKVIPGI 64

Query: 74 QLDIDMQDN 82
          +L  + +  
Sbjct: 65 ELSTEWEGR 73


>gi|284042257|ref|YP_003392597.1| PHP domain protein [Conexibacter woesei DSM 14684]
 gi|283946478|gb|ADB49222.1| PHP domain protein [Conexibacter woesei DSM 14684]
          Length = 640

 Score = 58.8 bits (141), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 69/211 (32%), Gaps = 51/211 (24%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+ +S  + A  +  +L    A    AIA+TD N +  ALE   +A A+GI+ I+
Sbjct: 410 VDLHMHTDHS-GDCATPVEVLLATAKARGLGAIAVTDHNEISGALEA--QAKASGIKVIV 466

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK--QSV 129
                    + +K  +QG+     +  ++         + L    +   +  QG      
Sbjct: 467 --------GEEVKTKDQGEVIGLFLTELIP--------RGLSLAATIAEIKRQGGVVYVP 510

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
                                   P DR       +     L            + +   
Sbjct: 511 H-----------------------PFDRMHAVPDYEHLLAVLDDVDA-------IEIFNP 540

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
           R   +    + V+ A  + +P  A +++   
Sbjct: 541 RIAIQEFNEEAVRFAAKYRIPAGAGSDAHVA 571


>gi|319936357|ref|ZP_08010773.1| phosphotransferase [Coprobacillus sp. 29_1]
 gi|319808472|gb|EFW05024.1| phosphotransferase [Coprobacillus sp. 29_1]
          Length = 296

 Score = 58.8 bits (141), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 65/190 (34%), Gaps = 30/190 (15%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +++ L +HS YS  +G  + + ++ +        +AI D N++ +  E  +     GI+ 
Sbjct: 3   NYIDLHMHSKYSD-DGQFTPSELVHQCLEAGVEIMAIADHNSVKAIDEEIKCCQEVGIKC 61

Query: 70  IIGCQLDIDMQD-NLKMTNQGKTPFP--------TVPSIVLLVSTAEGYQRLIELVSRMY 120
           I   ++D   +  NL +   G              V    L  S  +     ++L + + 
Sbjct: 62  IPAVEIDCTFEGVNLHVVGYGMDYHQEEIKALEENVLRQELSCSNQK-----LKLTNALG 116

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK--LF 178
                     +    L  +   G  + TG   G +             + L  +++    
Sbjct: 117 FD--------LKKEDLDAVSDNG--VWTGEMFGEV---LLAKEEYKNHELLKPYREGGKR 163

Query: 179 GDRLYVNLQR 188
            D  YVN   
Sbjct: 164 SDNPYVNFYW 173


>gi|183602363|ref|ZP_02963729.1| hypothetical protein BIFLAC_04940 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241191283|ref|YP_002968677.1| hypothetical protein Balac_1260 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196689|ref|YP_002970244.1| hypothetical protein Balat_1260 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218282|gb|EDT88927.1| hypothetical protein BIFLAC_04940 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249675|gb|ACS46615.1| hypothetical protein Balac_1260 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251243|gb|ACS48182.1| hypothetical protein Balat_1260 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794276|gb|ADG33811.1| hypothetical protein BalV_1223 [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 294

 Score = 58.8 bits (141), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 3/87 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+ +S  +G  +   ++ +  +     +AI D +      E  Q +    + P++  
Sbjct: 17  LHCHTVFS--DGTRTPREMVQEAKSLGLHGVAIADHDTTAGWEEAGQASHDLHL-PLMRG 73

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
                   N+ +        P    I 
Sbjct: 74  TEITAQDGNVSVHMLAYLYDPRNRHIC 100


>gi|68250081|ref|YP_249193.1| TrpH [Haemophilus influenzae 86-028NP]
 gi|145632848|ref|ZP_01788581.1| TrpH [Haemophilus influenzae 3655]
 gi|145634285|ref|ZP_01789995.1| TrpH [Haemophilus influenzae PittAA]
 gi|68058280|gb|AAX88533.1| TrpH [Haemophilus influenzae 86-028NP]
 gi|144986504|gb|EDJ93070.1| TrpH [Haemophilus influenzae 3655]
 gi|145268265|gb|EDK08259.1| TrpH [Haemophilus influenzae PittAA]
          Length = 274

 Score = 58.8 bits (141), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +  A     +A+ D + +    E    A   GI+ I G 
Sbjct: 7  LHCHSTAS--DGVLSPTELVHRAYAQGVNVLALCDHDTIVGIDEAEITAKEVGIELITGV 64

Query: 74 QLDIDMQDN 82
          ++  + +  
Sbjct: 65 EISTNWEGR 73


>gi|237748692|ref|ZP_04579172.1| phosphotransferase domain-containing protein [Oxalobacter
          formigenes OXCC13]
 gi|229380054|gb|EEO30145.1| phosphotransferase domain-containing protein [Oxalobacter
          formigenes OXCC13]
          Length = 277

 Score = 58.8 bits (141), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  S  +G LS   ++ +  A+    +A+TD + +    E  + A   GI+ + G 
Sbjct: 6  LHSHSRVS--DGVLSPTELVGRAQANGVKVLALTDHDEVGGITEAKKAAAKHGIRLVSGV 63

Query: 74 QLDIDM 79
          ++ I  
Sbjct: 64 EISITW 69


>gi|297626174|ref|YP_003687937.1| Predicted metal-dependent phosphoesterase [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921939|emb|CBL56499.1| Predicted metal-dependent phosphoesterase [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 293

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 82/258 (31%), Gaps = 35/258 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  +   ++ K   D    IA+ D +      E  +     G+  + G 
Sbjct: 5   LHTHSNVS--DGTDTPTALVQKAQRDGLAVIALCDHDTFDGLAEAEEAGRRFGVAVLPGI 62

Query: 74  QLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
           ++   +    + +   G  P+       L    A    RL +++++++ L        + 
Sbjct: 63  EISTHVGSTEVHLLGYGADPWAQPLRRELAHMRASRLDRLPKMIAKLHELG-------MD 115

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFF----FNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
           LS                  G +++            VA+  +        D  +     
Sbjct: 116 LSV-----------------GDVEKQMLGASSAGRPHVADALVAKGYVANRDEAFAKYLD 158

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             G   Y   + + LA   +L   A    +          DV+ +   +++ +      +
Sbjct: 159 STGP-AYVPRETLALARAIDLVHGAHGACIIAHPWIRGTRDVVTSALLASLKADHGLDGI 217

Query: 249 ---TPDHYLKNRSEMVSI 263
               PD   + R+ +  +
Sbjct: 218 EVDHPDQDQQTRALLFEL 235


>gi|193213346|ref|YP_001999299.1| PHP domain-containing protein [Chlorobaculum parvum NCIB 8327]
 gi|193086823|gb|ACF12099.1| PHP domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 288

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G  +   I+ K       AI+ITD + +    +    A   G++ I G 
Sbjct: 18 LHIHTKCS--DGLFTPEEIVRKAVHGGLKAISITDHDTVAGIDKAKPLALELGLELIPGV 75

Query: 74 QLDIDMQ 80
          ++    +
Sbjct: 76 EMSSAYK 82


>gi|160945453|ref|ZP_02092679.1| hypothetical protein FAEPRAM212_02977 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443184|gb|EDP20189.1| hypothetical protein FAEPRAM212_02977 [Faecalibacterium prausnitzii
           M21/2]
 gi|295105385|emb|CBL02929.1| Predicted metal-dependent phosphoesterases (PHP family)
           [Faecalibacterium prausnitzii SL3/3]
          Length = 286

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 4/123 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS+ S  +GA+ +  +    A     AIA++D + L SA          G++ I   
Sbjct: 5   LHIHSTCS--DGAVPIERLAPIAARTGLHAIALSDHDTLLSAQYAYAHTGQDGVELIPAV 62

Query: 74  Q-LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
           +    D +   ++      P    P++    +  +  +    L S    L+Q        
Sbjct: 63  ELTGYDFERQHRVHLLCYYPDVDCPALREHCAIMKERRNACALQS-AKELEQLYPQFTTD 121

Query: 133 LSW 135
           L+W
Sbjct: 122 LAW 124


>gi|218134196|ref|ZP_03463000.1| hypothetical protein BACPEC_02086 [Bacteroides pectinophilus ATCC
          43243]
 gi|217991571|gb|EEC57577.1| hypothetical protein BACPEC_02086 [Bacteroides pectinophilus ATCC
          43243]
          Length = 105

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VHS+YS  +G  +   ++D+       A+A+TD +      +    +    ++ I G 
Sbjct: 6  LHVHSTYS--DGTFTPKMLIDEAVRKGLSAMALTDHDTTDGIDDARLASAGTNVELIPGI 63

Query: 74 QLDIDMQ 80
          +L    +
Sbjct: 64 ELSCSYK 70


>gi|167822589|ref|ZP_02454060.1| error-prone DNA polymerase [Burkholderia pseudomallei 9]
          Length = 103

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 2/49 (4%)

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                     G   R   +V ++Q   T KG  + +VT  +         
Sbjct: 1    AAALRDRRNGRLARACGLVTARQMPGTAKG--VLFVTLEDETGCVNVIV 47


>gi|255022093|ref|ZP_05294097.1| PHP domain protein [Acidithiobacillus caldus ATCC 51756]
 gi|254968451|gb|EET26009.1| PHP domain protein [Acidithiobacillus caldus ATCC 51756]
          Length = 279

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 17 HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          HS++S  +G+LS+  ++ ++A      +A+TD +N       +++A   G++ I G 
Sbjct: 2  HSTFS--DGSLSVPELVARVADTGVEVMALTDHDNTAGVEMAAREAKRHGLRLISGV 56


>gi|325981007|ref|YP_004293409.1| PHP domain-containing protein [Nitrosomonas sp. AL212]
 gi|325530526|gb|ADZ25247.1| PHP domain protein [Nitrosomonas sp. AL212]
          Length = 290

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 63/176 (35%), Gaps = 11/176 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L    ++++ A      +A+TD +++    E  Q A A  I  I G 
Sbjct: 6   LHCHSNIS--DGVLPPAQLVERAAMRGVEILALTDHDDISGLAEARQMAEAKSITFINGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++ +  +                P I  L     G  +     +    L+     V I  
Sbjct: 64  EISVSWRGRTLHIIGLDIDPAYAPLIEGLADIRAGRAQ--RAENIARELE----KVGIPD 117

Query: 134 SWLQEIGTEG---LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
           S        G   LI  T  +   +++ +  +   V +K L+  K  +    + +L
Sbjct: 118 SLSGAYAHVGERRLIGRTHFARFLVEQGYAKDVKSVFKKYLVKGKPGYAAHEWASL 173


>gi|218282553|ref|ZP_03488803.1| hypothetical protein EUBIFOR_01385 [Eubacterium biforme DSM 3989]
 gi|218216540|gb|EEC90078.1| hypothetical protein EUBIFOR_01385 [Eubacterium biforme DSM 3989]
          Length = 297

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS YS  +G  +   +++         IA++D + +    E  +    AGI+ I   
Sbjct: 6  LHMHSCYSS-DGQFTPKELIEIAKEKGLKTIALSDHDCISGVKEMIRLGNEAGIEVIPAI 64

Query: 74 QLDIDMQ 80
          +    + 
Sbjct: 65 ECSTSIG 71


>gi|88601691|ref|YP_501869.1| PHP-like protein [Methanospirillum hungatei JF-1]
 gi|88187153|gb|ABD40150.1| PHP-like protein [Methanospirillum hungatei JF-1]
          Length = 227

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS YS  +  LS  NI+ +    +   IAITD N +   LE  +    + I  I+G 
Sbjct: 5   LHIHSKYSF-DSFLSPKNIIKEAKKHKIDVIAITDHNTIRGGLETLRINLDSKISVIVGS 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           ++  ++ D + +    +        ++  + +  G
Sbjct: 64  EIHTEIGDIIGLYLNEEIKSRLSLDVIDEIKSQGG 98


>gi|116051190|ref|YP_789979.1| PHP domain-containing protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115586411|gb|ABJ12426.1| putative PHP domain protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 295

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 10/109 (9%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +G L+   ++ +        +A+TD + L    E  Q A    I+ + 
Sbjct: 3   VDLHCHSTAS--DGVLAPAALVQRAHEKGVGLLALTDHDTLEGLPEAHQAAARLSIELVN 60

Query: 72  GCQLDIDMQD--------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
           G +L                 +                     E  +RL
Sbjct: 61  GVELSCTWGGATIHVLGYGFDLDAAPLRQATEALHRGRWARAEEIDRRL 109


>gi|294635972|ref|ZP_06714414.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Edwardsiella tarda ATCC 23685]
 gi|291090701|gb|EFE23262.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Edwardsiella tarda ATCC 23685]
          Length = 314

 Score = 58.5 bits (140), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 1  LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          L    E  P    L  H+  S  +G LS   ++ +        +AITD + +       Q
Sbjct: 14 LAHAPESPPVLFDLHSHTQAS--DGLLSPEALVARAVMRGVSTLAITDHDTVAGIAPARQ 71

Query: 61 KACAAGIQ 68
             A  + 
Sbjct: 72 AIAAQKLP 79


>gi|256825729|ref|YP_003149689.1| putative metal-dependent phosphoesterase, PHP family [Kytococcus
          sedentarius DSM 20547]
 gi|256689122|gb|ACV06924.1| predicted metal-dependent phosphoesterase, PHP family [Kytococcus
          sedentarius DSM 20547]
          Length = 283

 Score = 58.5 bits (140), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            HS+ S  +G  +   ++   A     A+A+TD +     +E      A G+Q
Sbjct: 12 HTHSAAS--DGTQAPAELVRTAAELGLGAVALTDHDTTSGWVEALAAGEALGVQ 63


>gi|295099978|emb|CBK89067.1| Predicted metal-dependent phosphoesterases (PHP family)
           [Eubacterium cylindroides T2-87]
          Length = 215

 Score = 58.5 bits (140), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 12/132 (9%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS YS  +G  S   ++D         I++TD + +    E ++     GI+ I G 
Sbjct: 6   LHMHSMYS-GDGQFSPKELIDIADKKGLKIISLTDHDAVKGVKEITELGKEKGIRVIPGI 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD----QGKQSV 129
           +    ++ N                + L         RL +L+   + L     Q K  +
Sbjct: 65  ECSTILEGNDVHLLGYGIDIENSYFVNLAD-------RLNKLMYDAFYLRVEKIQNKYGI 117

Query: 130 RICLSWLQEIGT 141
            +    L E   
Sbjct: 118 ELDADELIEASH 129


>gi|330989192|gb|EGH87295.1| phosphotransferase domain-containing protein [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 287

 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 2/161 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + 
Sbjct: 3   VDLHCHSTAS--DGALSSTALVARAHENGVRVLSLTDHDTLEGLEEARTAAHSLGMQLVN 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L                          +    EG     E +SR   +     ++  
Sbjct: 61  GVELSCTWGGATIHILGYGFDTQAPALTEAISRLHEGRWLRAEEISRKLAIKGMPGALEG 120

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             +  QE+G  G        +  + RA F      A ++ L
Sbjct: 121 ARAIQQELGDSGNAPARPHFADFMVRAGFVKDRAEAFRKWL 161


>gi|110679213|ref|YP_682220.1| DNA polymerase III alpha subunit, putative [Roseobacter denitrificans
            OCh 114]
 gi|109455329|gb|ABG31534.1| DNA polymerase III alpha subunit, putative [Roseobacter denitrificans
            OCh 114]
          Length = 131

 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 7/50 (14%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +     +   + +A +V+ +Q+  T KG  + ++T  +         +
Sbjct: 29   ARQLTQPPQNARVAVAGIVILRQRPGTAKG--VIFLTLEDETGVVNVIVW 76


>gi|95931125|ref|ZP_01313850.1| PHP-like [Desulfuromonas acetoxidans DSM 684]
 gi|95132815|gb|EAT14489.1| PHP-like [Desulfuromonas acetoxidans DSM 684]
          Length = 288

 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS  S  +GA +   +++K A +   A+A+ D +N+       Q     GI  I 
Sbjct: 5   VDLHTHSCCS--DGAFTPQQLIEKAAQNHVVAMALCDHDNIDGVEPARQAGHQRGIDVIS 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           G +L    ++   +   G    P  P ++
Sbjct: 63  GVELSCVWKEFEDIHLLGYGFDPRHPRLI 91


>gi|319897052|ref|YP_004135247.1| hypothetical protein HIBPF07670 [Haemophilus influenzae F3031]
 gi|317432556|emb|CBY80916.1| conserved hypothetical protein [Haemophilus influenzae F3031]
          Length = 274

 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +  A     +A+ D + +    E    A   GI+ I G 
Sbjct: 7  LHCHSTAS--DGVLSPTELVYRAYAQGVNVLALCDHDTIAGIDEAEISAKEVGIELITGV 64

Query: 74 QLDIDMQDN 82
          ++  + +  
Sbjct: 65 EISTNWEGR 73


>gi|168044390|ref|XP_001774664.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673964|gb|EDQ60479.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 294

 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS  +++ +   +    +A+TD + +       + A   G++ I G 
Sbjct: 3  LHTHSTCS--DGRLSPTDLVLRAHRNGVNVLALTDHDTMEGVPVALKVARDLGMRLIPGV 60


>gi|126725610|ref|ZP_01741452.1| DNA polymerase III, alpha subunit, putative [Rhodobacterales
            bacterium HTCC2150]
 gi|126704814|gb|EBA03905.1| DNA polymerase III, alpha subunit, putative [Rhodobacterales
            bacterium HTCC2150]
          Length = 128

 Score = 58.1 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++       G+ + +A +V+ +Q+  T KG  + ++T  +         +
Sbjct: 20   ACLPHDRLNDPPNGSLVAVAGLVLVRQRPGTAKG--VIFLTLEDETGVSNIVVW 71


>gi|127513178|ref|YP_001094375.1| phosphotransferase domain-containing protein [Shewanella loihica
          PV-4]
 gi|126638473|gb|ABO24116.1| PHP C-terminal domain protein [Shewanella loihica PV-4]
          Length = 286

 Score = 58.1 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS--QKA 62
          +      + L  H++ S  +G L+ + ++ +   +    +AITD + L    E      +
Sbjct: 1  MTDETRLIDLHSHTTAS--DGQLTPSELVARALDNGVQMLAITDHDTLAGLKEAHSFNDS 58

Query: 63 CAAGIQPIIGC 73
           A  +  I GC
Sbjct: 59 QAEPLTLINGC 69


>gi|192359793|ref|YP_001982271.1| PHP domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190685958|gb|ACE83636.1| PHP domain protein [Cellvibrio japonicus Ueda107]
          Length = 304

 Score = 58.1 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 3/99 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+ YS  +G LS   +  +  A Q   +A+TD + +         A   GI  + G 
Sbjct: 31  LHSHTHYS--DGRLSPAELFARAKARQVGVLAVTDHDTIAGLQSAQAAALEQGIGFVAGI 88

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
           +        + +   G    P   +++  V   E  +RL
Sbjct: 89  EFSCRWG-KVNVHVLGLAIDPQAAALIDAVQQQEDARRL 126


>gi|320537414|ref|ZP_08037364.1| PHP domain protein [Treponema phagedenis F0421]
 gi|320145740|gb|EFW37406.1| PHP domain protein [Treponema phagedenis F0421]
          Length = 284

 Score = 58.1 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 54/172 (31%), Gaps = 19/172 (11%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +G  +   +          A A+TD + +    E  + A   GI+ I 
Sbjct: 2   VDLHTHSTAS--DGTFTPTELAFLAKEAGLTAWALTDHDTMSGIEEAKKAADLLGIEFIN 59

Query: 72  GCQ-LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           G +           +   G +P  +    +L     +G        SR       K  + 
Sbjct: 60  GVELSIRWSPGEFHLLGLGVSPDSSGLRNLLH-KMKKGRIN----RSRQMAEKLNKAGIS 114

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
           I    L  +               I R  F     V EK++ T ++ F    
Sbjct: 115 IDFDRLMAVTKH----------SSIGRPHFA-RYLVQEKQVKTIQEAFDKYF 155


>gi|281413940|ref|ZP_06245682.1| DNA polymerase III, alpha subunit [Micrococcus luteus NCTC 2665]
          Length = 204

 Score = 58.1 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 58/178 (32%), Gaps = 24/178 (13%)

Query: 108 GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG-----------------LIMLTGG 150
           GY+ L ELVS  +    G  +     + + E+                     L +L G 
Sbjct: 28  GYRSLCELVSAAHARTTGGAAGGSPWASVAELAAAAAGRVPTAANRDNPPTPELFVLLGP 87

Query: 151 SSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH-----RGYDRYRESQVVQLA 204
            S  + R             L  +K  L     + ++  H     R  D     + ++ A
Sbjct: 88  DS-DVGRHLARRRYAAGLAALRRWKAALPAGSPHADVVTHLSAPGRRLDTGHAVKTLRAA 146

Query: 205 YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
               +P V TN   + + +     DVL AV   + +      +     +LK+ + M  
Sbjct: 147 RQARIPAVLTNAVRYAAPDGAATADVLDAVRALSSLDALHDLQPNGQGWLKSTAAMHR 204


>gi|303239051|ref|ZP_07325581.1| PHP domain protein [Acetivibrio cellulolyticus CD2]
 gi|302593389|gb|EFL63107.1| PHP domain protein [Acetivibrio cellulolyticus CD2]
          Length = 278

 Score = 58.1 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G++S   ++         A+A+TD + +    E   +    GI+ I G 
Sbjct: 7  LHTHSTAS--DGSVSPRELVRHAKESGLAAVALTDHDTIDGIEEALDEGNRIGIEVIAGV 64

Query: 74 QLDIDMQDNLKM 85
          +  +D    + +
Sbjct: 65 ETSVDFNPEMHI 76


>gi|85860568|ref|YP_462770.1| DNA polymerase IV [Syntrophus aciditrophicus SB]
 gi|85723659|gb|ABC78602.1| DNA polymerase IV [Syntrophus aciditrophicus SB]
          Length = 584

 Score = 58.1 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 74/244 (30%), Gaps = 44/244 (18%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSAL---EFSQKACA--- 64
           L VH+++S  +G  SL ++     A     +AITD +    +   L      ++  A   
Sbjct: 346 LHVHTNWS--DGTASLEDMARAAKALGYQYLAITDHSGGLGIAGGLNEERLLKQMQAIRQ 403

Query: 65  -----AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                 GI+ + G +++I     L + +   +    V + V                S  
Sbjct: 404 LDERLEGIRLLAGIEVNILADGRLDLPDGILSRLDVVVASVHSALNQ----------SEA 453

Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +        R  L  L+    + L   T    G   R       +   +     +K+  
Sbjct: 454 KMT-------RRILKALENPHVDILAHPTCRLIG--QREPIAVDLEAVFQAAAQHRKI-- 502

Query: 180 DRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
                 L+ +   DR     + +  A    + L    ++      D     + MA     
Sbjct: 503 ------LEINSMPDRLDLQDISIYRARELGVLLAIDTDAHRPEHFDLVRFGIAMARRGWC 556

Query: 239 VVSQ 242
             + 
Sbjct: 557 RPAH 560


>gi|302877022|ref|YP_003845655.1| PHP domain-containing protein [Clostridium cellulovorans 743B]
 gi|307687711|ref|ZP_07630157.1| PHP domain-containing protein [Clostridium cellulovorans 743B]
 gi|302579879|gb|ADL53891.1| PHP domain protein [Clostridium cellulovorans 743B]
          Length = 286

 Score = 58.1 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+  + +G+ +   ++D    ++  AIA+TD +N+    E ++ A    I  + 
Sbjct: 5  VDLHTHSN--ITDGSCTPKELIDVAVKEKVKAIALTDHDNIGGLEEAAKYAKEKNIDFLK 62

Query: 72 GCQLDIDMQDN 82
          G ++    +D 
Sbjct: 63 GIEISALYRDG 73


>gi|262183813|ref|ZP_06043234.1| DNA polymerase III, alpha subunit [Corynebacterium aurimucosum
          ATCC 700975]
          Length = 55

 Score = 58.1 bits (139), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 14/38 (36%)

Query: 7  KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAI 44
           +  F  L   SSYS L GA     ++ +        I
Sbjct: 18 SAVPFAELHAVSSYSFLRGASEPEELVARAVDLGLWGI 55


>gi|254168238|ref|ZP_04875084.1| hypothetical protein ABOONEI_2764 [Aciduliprofundum boonei T469]
 gi|197622747|gb|EDY35316.1| hypothetical protein ABOONEI_2764 [Aciduliprofundum boonei T469]
          Length = 216

 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          V +  HS+YS  +G + + ++L +       AIAITD N +   L    KA   GI
Sbjct: 3  VDMHTHSAYSP-DGKVPIKDMLKRAKKIGLGAIAITDHNEIKGTL----KAKKLGI 53


>gi|330503929|ref|YP_004380798.1| phosphotransferase domain-containing protein [Pseudomonas
          mendocina NK-01]
 gi|328918215|gb|AEB59046.1| phosphotransferase domain-containing protein [Pseudomonas
          mendocina NK-01]
          Length = 303

 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +GALS   ++ +        +A+TD + L    E  + A A  ++ + 
Sbjct: 18 VDLHCHSTAS--DGALSPAVLVARAHERGVRLLALTDHDTLEGLDEARRAATALDMKLVN 75

Query: 72 GCQLDIDMQ 80
          G +L     
Sbjct: 76 GIELSCTWG 84


>gi|226941024|ref|YP_002796098.1| hypothetical protein LHK_02105 [Laribacter hongkongensis HLHK9]
 gi|226715951|gb|ACO75089.1| phosphotransferase domain-containing protein [Laribacter
          hongkongensis HLHK9]
          Length = 287

 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L    ++ + AA     +A+TD +      E  Q A   G+  + G 
Sbjct: 6  LHCHSTAS--DGDLPPAELVARAAARGCRILALTDHDCTAGLAEARQAAETCGVHLVAGV 63

Query: 74 QLDIDMQDN 82
          ++ +   + 
Sbjct: 64 EVSVTWHNR 72


>gi|194337269|ref|YP_002019063.1| PHP domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309746|gb|ACF44446.1| PHP domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 286

 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G  +   I++K A     AI+ITD +++    +    A   GI+ I G 
Sbjct: 18 LHIHTKCS--DGIFTPAEIVEKAALVGLKAISITDHDSVLGIDKAKPLASEKGIELIPGV 75

Query: 74 QLDIDMQDN 82
          ++    + N
Sbjct: 76 EMSSTYKGN 84


>gi|292656099|ref|YP_003535996.1| PHP domain-containing protein [Haloferax volcanii DS2]
 gi|291372947|gb|ADE05174.1| PHP domain protein [Haloferax volcanii DS2]
          Length = 234

 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L VH+  S  +  +S+  +L + AA    A+AITD +++ +       A   G++ + 
Sbjct: 16 VDLHVHTDASY-DCEMSVEAVLARAAAVGLDAVAITDHDSVGALPRAFDIAHEYGVRVVP 74

Query: 72 GCQLDIDMQD 81
          G ++      
Sbjct: 75 GVEVSTADGH 84


>gi|313200704|ref|YP_004039362.1| php domain-containing protein [Methylovorus sp. MP688]
 gi|312440020|gb|ADQ84126.1| PHP domain protein [Methylovorus sp. MP688]
          Length = 298

 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 2/97 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L+   ++   AA     +A+TD +++    E  Q A   G+Q + G 
Sbjct: 14  LHSHSTVS--DGTLTPAELVRHAAAQGVRLLALTDHDDVAGLEEARQVADEHGMQFVSGV 71

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
           ++ +  +         +      P +  L     G  
Sbjct: 72  EISVTWKRRTLHIVGLRIDPAYQPLVDGLARIRAGRH 108


>gi|294495841|ref|YP_003542334.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
 gi|292666840|gb|ADE36689.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
          Length = 286

 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            HS YS  +G LS  +++ + A      I +TD + L   L         G++ I G 
Sbjct: 6  HTHSFYS--DGTLSPEDLVKEAAEVGLKYICLTDHDTLDGVLSIGDTKSRYGVELIPGV 62


>gi|262371121|ref|ZP_06064443.1| metal-dependent phosphoesterase [Acinetobacter johnsonii SH046]
 gi|262314007|gb|EEY95052.1| metal-dependent phosphoesterase [Acinetobacter johnsonii SH046]
          Length = 283

 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +G  +   ++D  A      +A+TD + +         A +  ++ I 
Sbjct: 4  VDLHTHSNIS--DGTFTPKQLVDAAAEKGIHTLALTDHDTMDGLALAELAAKSHTMRIIS 61

Query: 72 GC 73
          G 
Sbjct: 62 GV 63


>gi|167717946|ref|ZP_02401182.1| error-prone DNA polymerase [Burkholderia pseudomallei DM98]
          Length = 101

 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 2/46 (4%)

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                  G   R   +V ++Q   T KG  + +VT  +         
Sbjct: 2    LRDRRNGRLARACGLVTARQMPGTAKG--VLFVTLEDETGCVNVIV 45


>gi|325268070|ref|ZP_08134716.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Kingella
           denitrificans ATCC 33394]
 gi|324980455|gb|EGC16121.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Kingella
           denitrificans ATCC 33394]
          Length = 278

 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +GAL    ++   A +    +A+TD ++          A    I+ I G 
Sbjct: 4   LHCHSHIS--DGALPPEEVVALAAKNGCTMLALTDHDHTGGLAAARSAAQQHNIRFINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           ++ +  +                    LL    +G
Sbjct: 62  EISVTWRGRTIHMVGLDFDEHESSLQSLLAQLRQG 96


>gi|237735186|ref|ZP_04565667.1| phosphotransferase [Mollicutes bacterium D7]
 gi|229381962|gb|EEO32053.1| phosphotransferase [Coprobacillus sp. D7]
          Length = 296

 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          +EK   ++ L +HS YS  +G  +   ++++        +AI D N++ +  E  + A  
Sbjct: 1  MEK---YIDLHMHSKYSD-DGEFTPTQLVEQCHKAGIKVMAIADHNSVKAIDEAKEAAAK 56

Query: 65 AGIQPIIGCQLDIDMQ 80
            I+ I   ++D   +
Sbjct: 57 LNIKYIPSVEIDCTYK 72


>gi|296108982|ref|YP_003615931.1| PHP domain protein [Methanocaldococcus infernus ME]
 gi|295433796|gb|ADG12967.1| PHP domain protein [Methanocaldococcus infernus ME]
          Length = 294

 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 9/69 (13%)

Query: 14 LQVHSSYS---------LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          L +HS YS          L+      +I+          IAITD N +   LE  +    
Sbjct: 7  LHIHSKYSGIGRLGKLRFLDSIEEPRDIVKTAKKKGLDVIAITDHNTIRGGLEGKKYEKE 66

Query: 65 AGIQPIIGC 73
            I+ ++G 
Sbjct: 67 FDIEVVVGS 75


>gi|134095365|ref|YP_001100440.1| phosphoesterase PHP, N-terminal [Herminiimonas arsenicoxydans]
 gi|133739268|emb|CAL62317.1| Putative metal-dependent phosphoesterases (PHP family)
           [Herminiimonas arsenicoxydans]
          Length = 276

 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 2/105 (1%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS++S  +G L+  ++  +  A      A+TD + +    E    A A  +  + G 
Sbjct: 6   LHSHSNFS--DGTLTPADLAARAKAHGVDVWAMTDHDEVSGIAEARVAATALDLPFVSGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
           ++ I            +        +  L +T  G ++    +S 
Sbjct: 64  EISITWAAQTVHIVGLQIDEKNAALVQGLAATRGGREQRAREISA 108


>gi|182417284|ref|ZP_02948633.1| PHP domain protein [Clostridium butyricum 5521]
 gi|237667808|ref|ZP_04527792.1| PHP domain protein [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378881|gb|EDT76396.1| PHP domain protein [Clostridium butyricum 5521]
 gi|237656156|gb|EEP53712.1| PHP domain protein [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 280

 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V   VH+S S  +G LS  +I+ +   +    +AITD + L    E   +     I+ I 
Sbjct: 4  VDFHVHTSAS--DGILSPKDIVKRAKMNGVKFLAITDHDTLTGLDEAISEGLNQKIKVIP 61


>gi|110801623|ref|YP_698414.1| metal-dependent phosphoesterase [Clostridium perfringens SM101]
 gi|110682124|gb|ABG85494.1| conserved hypothetical protein [Clostridium perfringens SM101]
          Length = 314

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
                HS  S  +G LS   ++ +        IA+TD +      E  + A    IQ I 
Sbjct: 39  AEFHCHSLAS--DGTLSPKEVVAEAKKSGISLIALTDHDITSGLDEAKEAAKELDIQFIP 96

Query: 72  GCQLDIDMQ 80
           G +L  + +
Sbjct: 97  GIELSCEHK 105


>gi|270308036|ref|YP_003330094.1| PHP domain protein [Dehalococcoides sp. VS]
 gi|270153928|gb|ACZ61766.1| PHP domain protein [Dehalococcoides sp. VS]
          Length = 219

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 17/164 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VH++YS+ +      +++ K        I++ D      AL     A  + I+ I+  
Sbjct: 6   LHVHTNYSM-DSNTKPEDLIKKCVEKGVNCISLCDHGTAEGALML---AQNSPIKIIVSE 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++     + + M  +   P        +    A+G      LV   +  D+ + S  I  
Sbjct: 62  EVLTHHGEIMGMFLKESIPSGISVDECVSRIKAQG-----ALVCIPHPYDKLRGSALID- 115

Query: 134 SWLQEIGTEGLIMLTGGSSGPID--RAFFFNSSQVAEKRLLTFK 175
           S L+ + +EG I         +   R     S + A K    + 
Sbjct: 116 SELERLASEGKI-----DVLEVFNSRTLLNGSLKKARKLAKQYD 154


>gi|331082964|ref|ZP_08332084.1| hypothetical protein HMPREF0992_01008 [Lachnospiraceae bacterium
          6_1_63FAA]
 gi|330399959|gb|EGG79617.1| hypothetical protein HMPREF0992_01008 [Lachnospiraceae bacterium
          6_1_63FAA]
          Length = 278

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          ++ L VHS+ S  +G  + + ++         A A+TD +      E  + AC + ++ I
Sbjct: 4  YIDLHVHSTVS--DGTFTPSELVHYAIEKNLSAFALTDHDTTDGLEEAFKAACGSNLEII 61

Query: 71 IGCQLDIDMQD 81
           G +L      
Sbjct: 62 PGIELSTTWNS 72


>gi|258592351|emb|CBE68660.1| PHP-like [NC10 bacterium 'Dutch sediment']
          Length = 289

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++          +A+TD + L        +A   GIQ + G 
Sbjct: 6  LHAHSTAS--DGVLSPQELVHLAKDSGLSVLALTDHDTLEGLPMAMAEAERVGIQVVAGV 63

Query: 74 QLDIDMQD 81
          ++   ++D
Sbjct: 64 EITAHVED 71


>gi|256822096|ref|YP_003146059.1| PHP domain-containing protein [Kangiella koreensis DSM 16069]
 gi|256795635|gb|ACV26291.1| PHP domain protein [Kangiella koreensis DSM 16069]
          Length = 276

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+  S  +G+LS   ++          +AITD +++   L   ++     I+ I G 
Sbjct: 5  LHNHTHAS--DGSLSPLELVSLAVERGVDELAITDHDSVAGVLSLREQTHDFDIKIIEGV 62


>gi|253998630|ref|YP_003050693.1| PHP domain-containing protein [Methylovorus sp. SIP3-4]
 gi|253985309|gb|ACT50166.1| PHP domain protein [Methylovorus sp. SIP3-4]
          Length = 298

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 89/292 (30%), Gaps = 57/292 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L+   ++   AA     +A+TD +++    E  Q A   G+Q + G 
Sbjct: 14  LHSHSTVS--DGTLTPAELVRHAAAQGVRLLALTDHDDVAGLEEARQVADEHGMQFVSGV 71

Query: 74  QLDIDMQ-------------------DNLKMTNQGKTPFPTVPSIVLLVSTAEG-----Y 109
           ++ +  +                   D L     G+       +  L  +  EG     Y
Sbjct: 72  EISVTWKRRTLHIVGLRIDPTYQPLVDGLARIRAGRHIRAQGMAASLQAAGVEGSLEGAY 131

Query: 110 QRLIELVSRMYLLDQ------------------GKQSVRIC-LSWLQEIGTEGLIMLTGG 150
           +    ++SR +                       K         W       G I+ +GG
Sbjct: 132 KHAKGIISRTHFARYLVEAGYAADTRKVFKRYLVKGKPGYYEHHWADLDEALGWIIESGG 191

Query: 151 SSGPIDRAFFFNSSQVAEK----RLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYT 206
               +          +        L  F+ L G  + V    H   D+++E    +LA  
Sbjct: 192 ----VAVLAHPGRYDLGRTNMLLLLEEFRSLGGSAIEVVTGSHT-PDQFQEFG--KLARQ 244

Query: 207 HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
             L     ++         E    L  + H      +D P +     L + +
Sbjct: 245 FSLRASLGSDYHGPGHTYIEMGR-LPDLPHGCTPVWQDWPELEKLAPLPSAA 295


>gi|160937034|ref|ZP_02084397.1| hypothetical protein CLOBOL_01923 [Clostridium bolteae ATCC
          BAA-613]
 gi|158439935|gb|EDP17683.1| hypothetical protein CLOBOL_01923 [Clostridium bolteae ATCC
          BAA-613]
          Length = 279

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          S+V L VHS+ S  +G LS   ++         AIA+TD + 
Sbjct: 2  SYVDLHVHSNAS--DGTLSPEQVVRLAHEAGLSAIALTDHDT 41


>gi|257452728|ref|ZP_05618027.1| metal-dependent phosphoesterase [Fusobacterium sp. 3_1_5R]
 gi|317059269|ref|ZP_07923754.1| metal-dependent phosphoesterase [Fusobacterium sp. 3_1_5R]
 gi|313684945|gb|EFS21780.1| metal-dependent phosphoesterase [Fusobacterium sp. 3_1_5R]
          Length = 272

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L +HS+ S  +G+ S   I+      +  AIA+TD + +    E  Q+A   GI+ + 
Sbjct: 3  VDLHLHSTAS--DGSFSPKQIVQLALLKKMKAIALTDHDTIDGLYEAKQEAEKWGIEFVP 60


>gi|193214679|ref|YP_001995878.1| PHP domain-containing protein [Chloroherpeton thalassium ATCC
          35110]
 gi|193088156|gb|ACF13431.1| PHP domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 284

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L +H++ S  +G LS   I++K       AI++TD + + +       A A GI+ + 
Sbjct: 14 VDLHIHTTCS--DGVLSPKEIVEKAKQAGLKAISLTDHDTIKAIEPALPIAAAHGIELVP 71

Query: 72 GCQLDIDMQD 81
          G ++    ++
Sbjct: 72 GVEMSATHEE 81


>gi|330433206|gb|AEC18265.1| DNA polymerase III PolC [Gallibacterium anatis UMN179]
          Length = 279

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +        +A+TD + +    E    A    I  I G 
Sbjct: 14 LHSHSNAS--DGVLSPTALISRAKEQGIEVLALTDHDTVDGIAEAKTAAQQQQITLISGV 71


>gi|219870305|ref|YP_002474680.1| metal-dependent phosphoesterase [Haemophilus parasuis SH0165]
 gi|219690509|gb|ACL31732.1| metal-dependent phosphoesterase [Haemophilus parasuis SH0165]
          Length = 273

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 42/120 (35%), Gaps = 6/120 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L+   ++ +        +A+TD + +    E    A    +  I G 
Sbjct: 5   LHSHSTAS--DGVLTPTELVKRAVEQGVTMLALTDHDTVAGIAEAKTFAQNQPLTFISGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV----SRMYLLDQGKQSV 129
           ++ +  +                  + LL    +  Q   EL+    S+  + +  + + 
Sbjct: 63  EISVLWEGKSLHLTALNIDETHPAVVNLLARQKQLRQERAELIGEKLSKAGIPNAYQGAK 122


>gi|307245524|ref|ZP_07527611.1| hypothetical protein appser1_7280 [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
 gi|307254480|ref|ZP_07536316.1| hypothetical protein appser9_7260 [Actinobacillus
          pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258938|ref|ZP_07540669.1| hypothetical protein appser11_7350 [Actinobacillus
          pleuropneumoniae serovar 11 str. 56153]
 gi|306853583|gb|EFM85801.1| hypothetical protein appser1_7280 [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
 gi|306862530|gb|EFM94488.1| hypothetical protein appser9_7260 [Actinobacillus
          pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866962|gb|EFM98819.1| hypothetical protein appser11_7350 [Actinobacillus
          pleuropneumoniae serovar 11 str. 56153]
          Length = 272

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          L  HS+ S  +G LS   ++ +    Q   +A+TD + +    E    A    I+ I
Sbjct: 5  LHSHSTAS--DGMLSPTELVQRALEQQIEMLALTDHDTVAGIQEAKHAAQGQPIRFI 59


>gi|304316834|ref|YP_003851979.1| PHP domain protein [Thermoanaerobacterium thermosaccharolyticum
          DSM 571]
 gi|302778336|gb|ADL68895.1| PHP domain protein [Thermoanaerobacterium thermosaccharolyticum
          DSM 571]
          Length = 272

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L +H++ S  +G      ++     +    IAITD + L    E  + +   GI+ I 
Sbjct: 5  LHIHTTKS--DGTCKPKEVVQMAKNENLSTIAITDHDTLDGIDEAKEASKLYGIEIIP 60


>gi|190149980|ref|YP_001968505.1| TrpH-like protein [Actinobacillus pleuropneumoniae serovar 7 str.
          AP76]
 gi|189915111|gb|ACE61363.1| TrpH-like protein [Actinobacillus pleuropneumoniae serovar 7 str.
          AP76]
          Length = 272

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          L  HS+ S  +G LS   ++ +    Q   +A+TD + +    E    A    I+ I
Sbjct: 5  LHSHSTAS--DGMLSPTELVQRALEQQIEMLALTDHDTVAGIQEAKHAAQGQPIRFI 59


>gi|238927423|ref|ZP_04659183.1| PHP family metal-dependent phosphoesterase [Selenomonas flueggei
          ATCC 43531]
 gi|238884705|gb|EEQ48343.1| PHP family metal-dependent phosphoesterase [Selenomonas flueggei
          ATCC 43531]
          Length = 276

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          L +H+++S  +G  +   I++         I+ITD + +    E  +
Sbjct: 5  LHIHTTFS--DGRNTPEEIVEAAKEAGLRYISITDHDTVEGVTELYE 49


>gi|110799839|ref|YP_695716.1| hypothetical protein CPF_1270 [Clostridium perfringens ATCC
          13124]
 gi|110674486|gb|ABG83473.1| conserved hypothetical protein [Clostridium perfringens ATCC
          13124]
          Length = 280

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
               HS  S  +G LS   ++ +        IA+TD +      E  + A    IQ I 
Sbjct: 5  AEFHCHSLAS--DGTLSPKEVIAEAKKAGISLIALTDHDITSGLDEAKKAAKELDIQFIP 62

Query: 72 GCQLDIDMQ 80
          G +L  + +
Sbjct: 63 GIELSCEHK 71


>gi|53729176|ref|ZP_00134019.2| COG0613: Predicted metal-dependent phosphoesterases (PHP family)
          [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208151|ref|YP_001053376.1| TrpH-like protein [Actinobacillus pleuropneumoniae L20]
 gi|303250426|ref|ZP_07336624.1| TrpH-like protein [Actinobacillus pleuropneumoniae serovar 6 str.
          Femo]
 gi|307249876|ref|ZP_07531850.1| hypothetical protein appser4_6740 [Actinobacillus
          pleuropneumoniae serovar 4 str. M62]
 gi|307252221|ref|ZP_07534118.1| hypothetical protein appser6_7370 [Actinobacillus
          pleuropneumoniae serovar 6 str. Femo]
 gi|307256690|ref|ZP_07538469.1| hypothetical protein appser10_6930 [Actinobacillus
          pleuropneumoniae serovar 10 str. D13039]
 gi|307261132|ref|ZP_07542809.1| hypothetical protein appser12_6940 [Actinobacillus
          pleuropneumoniae serovar 12 str. 1096]
 gi|307263308|ref|ZP_07544926.1| hypothetical protein appser13_7270 [Actinobacillus
          pleuropneumoniae serovar 13 str. N273]
 gi|126096943|gb|ABN73771.1| TrpH-like protein [Actinobacillus pleuropneumoniae serovar 5b
          str. L20]
 gi|302650752|gb|EFL80910.1| TrpH-like protein [Actinobacillus pleuropneumoniae serovar 6 str.
          Femo]
 gi|306858065|gb|EFM90147.1| hypothetical protein appser4_6740 [Actinobacillus
          pleuropneumoniae serovar 4 str. M62]
 gi|306860143|gb|EFM92159.1| hypothetical protein appser6_7370 [Actinobacillus
          pleuropneumoniae serovar 6 str. Femo]
 gi|306864738|gb|EFM96642.1| hypothetical protein appser10_6930 [Actinobacillus
          pleuropneumoniae serovar 10 str. D13039]
 gi|306869162|gb|EFN00962.1| hypothetical protein appser12_6940 [Actinobacillus
          pleuropneumoniae serovar 12 str. 1096]
 gi|306871370|gb|EFN03096.1| hypothetical protein appser13_7270 [Actinobacillus
          pleuropneumoniae serovar 13 str. N273]
          Length = 272

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          L  HS+ S  +G LS   ++ +    Q   +A+TD + +    E    A    I+ I
Sbjct: 5  LHSHSTAS--DGMLSPTELVQRALEQQIEMLALTDHDTVAGIQEAKHAAQGQPIRFI 59


>gi|147677642|ref|YP_001211857.1| metal-dependent phosphoesterases [Pelotomaculum thermopropionicum
          SI]
 gi|146273739|dbj|BAF59488.1| predicted metal-dependent phosphoesterases [Pelotomaculum
          thermopropionicum SI]
          Length = 274

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L VH++ S  +G  S   ++ K  A    AIAITD + L       +      ++ + 
Sbjct: 3  VDLHVHTTAS--DGTDSPAEVVLKAKAIGLSAIAITDHDTLEGVEPAFEAGQLEKLEIVP 60


>gi|303248922|ref|ZP_07335169.1| PHP domain protein [Desulfovibrio fructosovorans JJ]
 gi|302489645|gb|EFL49581.1| PHP domain protein [Desulfovibrio fructosovorans JJ]
          Length = 300

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +  +++   A     A+A+TD + L    E        G+  + G 
Sbjct: 6  LHTHSTAS--DGTFAPGDLVALAAQKNLAAVALTDHDTLEGLAEARTAGERYGVDVVSGV 63

Query: 74 QLDIDMQDN 82
          +L +   D 
Sbjct: 64 ELSVADGDR 72


>gi|308177942|ref|YP_003917348.1| PHP domain-containing protein [Arthrobacter arilaitensis Re117]
 gi|307745405|emb|CBT76377.1| PHP domain-containing protein [Arthrobacter arilaitensis Re117]
          Length = 281

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 86/255 (33%), Gaps = 31/255 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  +   ++   +      +A+TD +      + ++ A   G+  I G 
Sbjct: 5   LHTHSNVS--DGTETPTQLMHAASVAGLDVVALTDHDQTTGWAQATEAASKLGLGFIPGM 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++     + + +        P+   ++  +  A        L SR+          R  +
Sbjct: 63  EITCQDSNGISVHLLSYLHDPSYQPLLDELDNA--------LNSRI-------IRARRIV 107

Query: 134 SWLQEIGTE-----GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNL 186
             L E         G   L G + G    A    ++ V E R   F  +     R YV  
Sbjct: 108 DLLAEDYPISWDLVGEHCLPGSTVGRPHIADALVTAGVVENRNEAFANILSSRSRYYV-- 165

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVAT--NNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             H   +     Q+V+ A    +P+ A    ++      D   HD++ A      V  +D
Sbjct: 166 -SHPAVNPVTAVQLVREA--GGVPVFAHPKASARGRVVPDSTFHDMIDAGLAGVEVHHRD 222

Query: 245 RPRVTPDHYLKNRSE 259
                    L+  +E
Sbjct: 223 NTAEGKTWLLELAAE 237


>gi|303252410|ref|ZP_07338576.1| TrpH-like protein [Actinobacillus pleuropneumoniae serovar 2 str.
          4226]
 gi|307247641|ref|ZP_07529683.1| hypothetical protein appser2_6360 [Actinobacillus
          pleuropneumoniae serovar 2 str. S1536]
 gi|302648869|gb|EFL79059.1| TrpH-like protein [Actinobacillus pleuropneumoniae serovar 2 str.
          4226]
 gi|306855853|gb|EFM88014.1| hypothetical protein appser2_6360 [Actinobacillus
          pleuropneumoniae serovar 2 str. S1536]
          Length = 272

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          L  HS+ S  +G LS   ++ +    Q   +A+TD + +    E    A    I+ I
Sbjct: 5  LHSHSTAS--DGMLSPTELVQRALEQQIEMLALTDHDTVAGIQEAKHAAQGQPIRFI 59


>gi|165976086|ref|YP_001651679.1| metal-dependent phosphoesterase [Actinobacillus pleuropneumoniae
          serovar 3 str. JL03]
 gi|165876187|gb|ABY69235.1| probable metal-dependent phosphoesterase [Actinobacillus
          pleuropneumoniae serovar 3 str. JL03]
          Length = 272

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          L  HS+ S  +G LS   ++ +    Q   +A+TD + +    E    A    I+ I
Sbjct: 5  LHSHSTAS--DGMLSPTELVQRALEQQIEMLALTDHDTVAGIQEAKHAAQGQPIRFI 59


>gi|260588430|ref|ZP_05854343.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM
           20583]
 gi|260541304|gb|EEX21873.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM
           20583]
          Length = 166

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 16/159 (10%)

Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN---IVVYNNRKNGKE 669
            +  T     +++    QA + +QP  + ++    S+ R    D    I  Y   KN   
Sbjct: 4   CSVATTNEQNVDTQVGLQAAKRIQPHSLVELATANSIMRLMVTDGEQPIDTYIRYKNDIS 63

Query: 670 KI-----VSIH------PLIDPMLKETQGVIIYQEQVMQIAQL--LSGYSLSEADVLRRA 716
           +         H       +I+P L    GV   QE VM+++    ++ +S++E++ LR++
Sbjct: 64  EWYKCMREEYHLTEVEIKIIEPYLLPVYGVGDTQEIVMELSMDEHIANFSVAESNKLRKS 123

Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           + KK KE   K K  F       G S  +   I+  +  
Sbjct: 124 IAKKDKELQQKMKHTFFEAGRGIGTSDNLLNYIWNEVVG 162


>gi|225569694|ref|ZP_03778719.1| hypothetical protein CLOHYLEM_05788 [Clostridium hylemonae DSM
           15053]
 gi|225161164|gb|EEG73783.1| hypothetical protein CLOHYLEM_05788 [Clostridium hylemonae DSM
           15053]
          Length = 289

 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 12/100 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VH++ S  +G+ S+  +LD         IA+TD +    + +    A   G + I G 
Sbjct: 19  LHVHTACS--DGSASVEYVLDYAKRAGLRYIAVTDHDTFAGSRKARAAAGPGGPEVIPGA 76

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
                     +++ +       V  +       +G QR +
Sbjct: 77  ----------EISARDDKRGRNVHMLCYCPKDEDGLQRFM 106


>gi|315227024|ref|ZP_07868811.1| PHP family metal-dependent phosphoesterase [Parascardovia
          denticolens DSM 10105]
 gi|315119474|gb|EFT82607.1| PHP family metal-dependent phosphoesterase [Parascardovia
          denticolens DSM 10105]
          Length = 305

 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L  H+++S  +G ++   +LD+ +      +A+TD +   S +   + A       I 
Sbjct: 28 LHCHTTFS--DGTVTPQGMLDQASRLGLAGVAVTDHDTTASWVPAKESALDLPFPLIR 83


>gi|302392224|ref|YP_003828044.1| PHP domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302204301|gb|ADL12979.1| PHP domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 288

 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L +H++ S  +G+ + + +++K        IAITD + +    E   +A    ++ I 
Sbjct: 3  VDLHLHTTAS--DGSFTPSEVVNKAVQLGLDVIAITDHDTVGGIPEAKAEAFDKDLEVIS 60

Query: 72 GCQLDIDMQD 81
          G +L+ ++ D
Sbjct: 61 GIELNTELFD 70


>gi|294787407|ref|ZP_06752660.1| PHP domain N- region family protein [Parascardovia denticolens
          F0305]
 gi|294484763|gb|EFG32398.1| PHP domain N- region family protein [Parascardovia denticolens
          F0305]
          Length = 302

 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L  H+++S  +G ++   +LD+ +      +A+TD +   S +   + A       I 
Sbjct: 25 LHCHTTFS--DGTVTPQGMLDQASRLGLAGVAVTDHDTTASWVPAKESALDLPFPLIR 80


>gi|283457685|ref|YP_003362270.1| putative metal-dependent phosphoesterase [Rothia mucilaginosa
           DY-18]
 gi|283133685|dbj|BAI64450.1| predicted metal-dependent phosphoesterase [Rothia mucilaginosa
           DY-18]
          Length = 343

 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 75/213 (35%), Gaps = 11/213 (5%)

Query: 3   QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           ++L ++  +  L +HS+ S  +G  SL  ++  IA       A+TD +      + +Q A
Sbjct: 47  EHLNRAGRY-DLHIHSAIS--DGTQSLIELVPLIARAGLAGFALTDHDTTAGWAQAAQLA 103

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              G+  + G +         + T+           ++       G   L   V  +   
Sbjct: 104 GEYGLDFLPGAEFSC----RYRYTDGEDRARTKTIHLLAYGFDPVG-SELARRVEAIRAS 158

Query: 123 DQGKQSVRICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
            +G+    +        +  + ++   G  +  + R    ++  VA   +    + F   
Sbjct: 159 REGRAQAIVGRLAADYPLTWDDVLAQVGEGNTAVGRPHIADAL-VAAGVVTDRSEAFAKL 217

Query: 182 LYVNLQRHRGYDRYRESQVVQLAYTH-ELPLVA 213
           LY     +   D     + V+L      +P++A
Sbjct: 218 LYTGSPYYVPQDALDPLEAVRLVREAGGVPVIA 250


>gi|298674507|ref|YP_003726257.1| PHP domain-containing protein [Methanohalobium evestigatum
          Z-7303]
 gi|298287495|gb|ADI73461.1| PHP domain protein [Methanohalobium evestigatum Z-7303]
          Length = 223

 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           VHS +S  +    L +I+     +   A+AI D + +   +E  + A   G +
Sbjct: 8  HVHSCFS-KDSNSKLESIISFAEKNGLDAVAICDHDTVEGGIEGLKVAKKLGSK 60


>gi|298675161|ref|YP_003726911.1| phosphoresterase PHP domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298288149|gb|ADI74115.1| PHP domain protein [Methanohalobium evestigatum Z-7303]
          Length = 221

 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ-KACAAGIQPIIG 72
           L  H+ YS   G      +++         IA+TD + +  ALE  + +    G+  IIG
Sbjct: 5   LHTHTKYSPRCGVTEPKKLVNTAIKKGLDGIAVTDHDTIKGALEAKKFETPDFGV--IIG 62

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           C++  D  + + +  Q +    +   ++  +    G
Sbjct: 63  CEVSTDKGELIGLFLQDEITSTSPEDVIEDIHNQGG 98


>gi|260575479|ref|ZP_05843478.1| nucleic acid binding OB-fold tRNA/helicase-type [Rhodobacter sp. SW2]
 gi|259022399|gb|EEW25696.1| nucleic acid binding OB-fold tRNA/helicase-type [Rhodobacter sp. SW2]
          Length = 126

 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                  G  + +A +V+ +Q+  T KG  + ++T  +         +
Sbjct: 26   LDEPPVGARVCVAGLVLVRQRPGTAKG--VIFLTLEDETAVCNVVVW 70


>gi|310778048|ref|YP_003966381.1| PHP domain protein [Ilyobacter polytropus DSM 2926]
 gi|309747371|gb|ADO82033.1| PHP domain protein [Ilyobacter polytropus DSM 2926]
          Length = 278

 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V + +H++ S  +GALS   +++K        +AITD + +    E  +KA   GI+ I 
Sbjct: 2  VDMHLHTTVS--DGALSPTELVEKAYEKGIKVLAITDHDTVDGLEEGRKKALELGIEFIN 59

Query: 72 GCQLDIDM 79
          G ++  D 
Sbjct: 60 GIEISCDW 67


>gi|56478936|ref|YP_160525.1| metal-dependent phosphoesterase [Aromatoleum aromaticum EbN1]
 gi|56314979|emb|CAI09624.1| predicted metal-dependent phosphoesterases (PHP family)
           [Aromatoleum aromaticum EbN1]
          Length = 276

 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 68/234 (29%), Gaps = 47/234 (20%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L+   ++ + AA+    +A+TD + +    E    A   GI+ + G 
Sbjct: 5   LHCHSTMS--DGWLAPAEVVRRAAANGVTLLALTDHDEVGGLDEAIATAAEVGIRLVPGV 62

Query: 74  QLDIDMQD-------------------NLKMTNQGKTPFPTVPSIVLLVSTAEG------ 108
           ++ +                        L     G+          L  +   G      
Sbjct: 63  EISVSFSGETVHVVGLGIDHRHPRLLAGLAEVRAGRDGRAVRIGAALEAAGIHGALEGAR 122

Query: 109 -YQRLIELVSRMYLLDQ------------------GKQSVR-ICLSWLQEIGTEGLIMLT 148
            + R   LVSR +                       +     +   W       G I   
Sbjct: 123 KFARNPALVSRAHFARHLVASGLMPDVGTVFRHYLARGKPGYVEHEWATLEDAVGWIHAA 182

Query: 149 GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQ 202
           GG +     A +  S    E     F    G+ + V    H   +  + + V +
Sbjct: 183 GGIAVIAHPARYRFSEAELEALFDRFTACGGEAVEVVSGAHSDAEVLKFASVAR 236


>gi|313895925|ref|ZP_07829479.1| PHP domain protein [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975350|gb|EFR40811.1| PHP domain protein [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 277

 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC---AAGIQPI 70
          L +H+++S  +G  +   I++   A     I+ITD +++    E  +       + ++ I
Sbjct: 5  LHIHTTFS--DGRDTPEEIVEAAKAAGLRYISITDHDSVEGVTELYESGRCPAGSQLRII 62

Query: 71 IGCQLDIDMQDN 82
           G     D  D 
Sbjct: 63 PGVGFSADYPDR 74


>gi|257466589|ref|ZP_05630900.1| metal-dependent phosphoesterase [Fusobacterium gonidiaformans
          ATCC 25563]
 gi|315917744|ref|ZP_07913984.1| metal-dependent phosphoesterase [Fusobacterium gonidiaformans
          ATCC 25563]
 gi|313691619|gb|EFS28454.1| metal-dependent phosphoesterase [Fusobacterium gonidiaformans
          ATCC 25563]
          Length = 272

 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          V L +HS+ S  +G+ S   I+      +  AIA+TD + +    E  Q+A   GI+ +
Sbjct: 3  VDLHLHSTAS--DGSFSPKQIVQLALLKKMKAIALTDHDTIDGLYEAKQEAEKWGIEFV 59


>gi|169831226|ref|YP_001717208.1| phosphotransferase domain-containing protein [Candidatus
          Desulforudis audaxviator MP104C]
 gi|169638070|gb|ACA59576.1| PHP C-terminal domain protein [Candidatus Desulforudis
          audaxviator MP104C]
          Length = 270

 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          L VH++ S  +G ++   ++    A    AIAITD + +       Q+A A     +I 
Sbjct: 5  LHVHTTAS--DGTVTPAGVVQLARALGLGAIAITDHDTVSGVAPALQRAGATDGPLVIP 61


>gi|42528118|ref|NP_973216.1| phosphotransferase domain-containing protein [Treponema denticola
          ATCC 35405]
 gi|41819163|gb|AAS13135.1| PHP domain protein [Treponema denticola ATCC 35405]
          Length = 291

 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +G  +   +   +      A A+TD + L    E + +A   GI  I 
Sbjct: 2  VDLHTHSTAS--DGTFTPAELAAAVKKAGISAFALTDHDILSGLDEAAAEAKRQGIIFIR 59

Query: 72 GC 73
          G 
Sbjct: 60 GV 61


>gi|325474669|gb|EGC77855.1| PHP domain-containing protein [Treponema denticola F0402]
          Length = 291

 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +G  +   +   +      A A+TD + L    E + +A   GI  I 
Sbjct: 2  VDLHTHSTAS--DGTFTPAELAAAVKKAGISAFALTDHDILSGLDEAAAEAKRQGIIFIR 59

Query: 72 GC 73
          G 
Sbjct: 60 GV 61


>gi|198283229|ref|YP_002219550.1| PHP domain-containing protein [Acidithiobacillus ferrooxidans
          ATCC 53993]
 gi|218667411|ref|YP_002425461.1| hypothetical protein AFE_0987 [Acidithiobacillus ferrooxidans
          ATCC 23270]
 gi|198247750|gb|ACH83343.1| PHP domain protein [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519624|gb|ACK80210.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans
          ATCC 23270]
          Length = 286

 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 1  LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          + Q    SP  V L +HS  S  +G ++  +++ ++       +A+TD +N     E + 
Sbjct: 1  MAQQYPVSP--VDLHMHSMAS--DGTMTPADLVQRVHGAGVRVMALTDHDNTAGLDEAAV 56

Query: 61 KACAAGIQPIIGCQLDIDMQ 80
          +A    I+ I G ++  + +
Sbjct: 57 QAETLDIRLIPGVEISSEWE 76


>gi|57234471|ref|YP_181454.1| phosphotransferase domain-containing protein [Dehalococcoides
           ethenogenes 195]
 gi|57224919|gb|AAW39976.1| PHP domain protein [Dehalococcoides ethenogenes 195]
          Length = 219

 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 17/164 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VH++YS+ +      +++ +        I++ D      AL     A  + I+ I+  
Sbjct: 6   LHVHTNYSM-DSNTKPEDLIKRCLEKGINCISVCDHGTAEGALML---AKNSPIKIIVSE 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++     + + M  +   P        +    A+G      LV   +  D+ + S  I  
Sbjct: 62  EVLTPHGEIMGMFLKESIPSGISVDECVSRIKAQG-----ALVCIPHPYDKLRGSALID- 115

Query: 134 SWLQEIGTEGLIMLTGGSSGPID--RAFFFNSSQVAEKRLLTFK 175
           S L+ + +EG I         +   R     S + A K    + 
Sbjct: 116 SELERLASEGKI-----DVLEVFNSRTLLNGSLKKARKLAKQYD 154


>gi|239501670|ref|ZP_04660980.1| metal-dependent phosphoesterase [Acinetobacter baumannii AB900]
          Length = 283

 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++      +   +A+TD + +       + A    +Q I G 
Sbjct: 6  LHTHSNIS--DGTLSPELLVQAAVDVKLHTLALTDHDTMDGLQRARKAAQPHDLQIISGV 63


>gi|255326973|ref|ZP_05368049.1| PHP domain protein [Rothia mucilaginosa ATCC 25296]
 gi|255296190|gb|EET75531.1| PHP domain protein [Rothia mucilaginosa ATCC 25296]
          Length = 322

 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 75/213 (35%), Gaps = 11/213 (5%)

Query: 3   QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           ++L ++  +  L +HS+ S  +G  SL  ++  IA       A+TD +      + +Q A
Sbjct: 26  EHLNRAGRY-DLHIHSAIS--DGTQSLIELVPLIARAGLAGFALTDHDTTAGWAQAAQLA 82

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              G+  + G +         + T+           ++       G   L   V  +   
Sbjct: 83  GEYGLDFLPGAEFSC----RYRYTDGEDRARTKTIHLLAYGFDPVG-SELARRVEAIRAS 137

Query: 123 DQGKQSVRICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
            +G+    +        +  + ++   G  +  + R    ++  VA   +    + F   
Sbjct: 138 REGRAQAIVGRLAADYPLTWDDVLAQVGEGNTAVGRPHIADAL-VAAGVVTDRSEAFAKL 196

Query: 182 LYVNLQRHRGYDRYRESQVVQLAYTH-ELPLVA 213
           LY     +   D     + V+L      +P++A
Sbjct: 197 LYTGSPYYVPQDALDPLEAVRLVREAGGVPVIA 229


>gi|197725318|pdb|3E0F|A Chain A, Crystal Structure Of A Putative Metal-Dependent
          Phosphoesterase (Bad_1165) From Bifidobacterium
          Adolescentis Atcc At 2.40 A Resolution
 gi|304446059|pdb|3O0F|A Chain A, Crystal Structure Of A Putative Metal-Dependent
          Phosphoesterase (Bad_1165) From Bifidobacterium
          Adolescentis Atcc 15703 At 1.94 A Resolution
          Length = 301

 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            H+ +S  +G  +   ++++        +AI D +      E ++ +   G+  ++G +
Sbjct: 18 HCHTVFS--DGTETPRTLVEQARKLGLHGVAIADHDTTAGWDEATEASEEIGLPLLLGTE 75

Query: 75 LDIDMQD 81
          +    +D
Sbjct: 76 ITAVDED 82


>gi|109899137|ref|YP_662392.1| PHP-like [Pseudoalteromonas atlantica T6c]
 gi|109701418|gb|ABG41338.1| PHP-like protein [Pseudoalteromonas atlantica T6c]
          Length = 288

 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 80/256 (31%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
           L  H+ YS  +G LS   ++D+    Q   +AITD + + +       Q      +  + 
Sbjct: 5   LHCHTYYS--DGQLSPVELVDRANNMQVDVLAITDHDTVQALDEARAHQAKQKRKMHIVN 62

Query: 72  G-----CQLDIDM------------------------QDNLKMTNQGKTPFPTVPSIVLL 102
           G        + D+                        +D        K     V +++  
Sbjct: 63  GIELSTSWHNFDIHILGLNVDKDDEVFRQRLVEQKNERDARAQKMSDKLAKAGVENVLDD 122

Query: 103 VSTAEGYQRLIE------LVSRMYLLD---------QGKQSVRICLSWLQEIGTEGLIML 147
                G  +L        LV R  + D            +   +   W+        I  
Sbjct: 123 AKLLAGEGQLTRAHFARVLVERKAVRDFESAFKKYLGKGKRAHVKPQWISIEEAIEWIHD 182

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
            GG +       +  +++   + +  FK+  GD +      H   +  +   +V+LA  H
Sbjct: 183 AGGKAVLAHPGHYDMTTKWLRRLVTEFKQAGGDGI---ETTHTRINPEKRKLIVELAMEH 239

Query: 208 ELPLVATNNSLFLSEE 223
            L   A ++  F+S  
Sbjct: 240 NLQASAGSDFHFVSRW 255


>gi|167037597|ref|YP_001665175.1| phosphotransferase domain-containing protein [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|167040259|ref|YP_001663244.1| phosphotransferase domain-containing protein [Thermoanaerobacter
          sp. X514]
 gi|300914343|ref|ZP_07131659.1| PHP domain protein [Thermoanaerobacter sp. X561]
 gi|307724421|ref|YP_003904172.1| PHP domain-containing protein [Thermoanaerobacter sp. X513]
 gi|320116012|ref|YP_004186171.1| PHP domain-containing protein [Thermoanaerobacter brockii subsp.
          finnii Ako-1]
 gi|166854499|gb|ABY92908.1| PHP C-terminal domain protein [Thermoanaerobacter sp. X514]
 gi|166856431|gb|ABY94839.1| PHP C-terminal domain protein [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|300889278|gb|EFK84424.1| PHP domain protein [Thermoanaerobacter sp. X561]
 gi|307581482|gb|ADN54881.1| PHP domain protein [Thermoanaerobacter sp. X513]
 gi|319929103|gb|ADV79788.1| PHP domain protein [Thermoanaerobacter brockii subsp. finnii
          Ako-1]
          Length = 278

 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F  L +HS  S  +G  S + ++          I++TD + +    E  + +    I+ I
Sbjct: 2  FADLHMHSKAS--DGTNSPSEVVRLAKEHGLSCISLTDHDTVDGLEEAMEASAKYEIEVI 59

Query: 71 IGCQLDIDMQD 81
           G + +   Q+
Sbjct: 60 PGIEFNCYYQN 70


>gi|147919696|ref|YP_686559.1| metal-dependent phosphoesterase [uncultured methanogenic archaeon
          RC-I]
 gi|110621955|emb|CAJ37233.1| putative metal-dependent phosphoesterase (PHP family) [uncultured
          methanogenic archaeon RC-I]
          Length = 219

 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS YS  +G + + ++L          IAITD + +   +E  +     GI  I GC
Sbjct: 6  LHSHSRYS-KDGIMDVRDLLKIAKKRGLDGIAITDHDTIRGGMEAVKL-KPEGIDVICGC 63

Query: 74 QLDIDMQD 81
          ++  D  D
Sbjct: 64 EVKTDRGD 71


>gi|150016290|ref|YP_001308544.1| phosphotransferase domain-containing protein [Clostridium
          beijerinckii NCIMB 8052]
 gi|149902755|gb|ABR33588.1| PHP C-terminal domain protein [Clostridium beijerinckii NCIMB
          8052]
          Length = 279

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V   VH+S S  +G LS   ++ +   +    +AITD + L    +  +++    I  I 
Sbjct: 4  VDFHVHTSSS--DGTLSPKEVVKRAHDNNVKYLAITDHDTLSGLDKAIEESLKYDITLIP 61


>gi|262281057|ref|ZP_06058839.1| metal-dependent phosphoesterase [Acinetobacter calcoaceticus
          RUH2202]
 gi|262257288|gb|EEY76024.1| metal-dependent phosphoesterase [Acinetobacter calcoaceticus
          RUH2202]
          Length = 283

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          L  HS+ S  +G LS   ++          +A+TD + +         A    ++ I
Sbjct: 6  LHTHSNIS--DGTLSPELLVQAAIDVNLHTLALTDHDTMDGLQRAKIAAQGHDLKII 60


>gi|113461026|ref|YP_719093.1| TrpH protein [Haemophilus somnus 129PT]
 gi|112823069|gb|ABI25158.1| possible TrpH protein [Haemophilus somnus 129PT]
          Length = 269

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            HS  S+ +G LS   I+ +        +A+TD + +    +   +A   GI  I G +
Sbjct: 2  HCHS--SISDGTLSPQEIVIRAHQQGVNVLALTDHDTIAGLSQARTQAEQLGISLINGVE 59

Query: 75 LDIDMQD 81
          +    ++
Sbjct: 60 ISTSWEN 66


>gi|299768775|ref|YP_003730801.1| PHP domain protein [Acinetobacter sp. DR1]
 gi|298698863|gb|ADI89428.1| PHP domain protein [Acinetobacter sp. DR1]
          Length = 283

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          L  HS+ S  +G LS   ++          +A+TD + +         A    ++ I
Sbjct: 6  LHTHSNIS--DGTLSPELLVQAAIDVNLHTLALTDHDTMDGLQRARIAAQGHDLKII 60


>gi|119356499|ref|YP_911143.1| phosphotransferase domain-containing protein [Chlorobium
          phaeobacteroides DSM 266]
 gi|119353848|gb|ABL64719.1| PHP C-terminal domain protein [Chlorobium phaeobacteroides DSM
          266]
          Length = 286

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G  +   I++K AA    AI+ITD +++    +    A   G++ I G 
Sbjct: 18 LHIHTKCS--DGIFTPEQIIEKAAAVGLKAISITDHDSVLGIDKAKPLALTKGVELIPGV 75

Query: 74 QLDIDMQ 80
          ++    +
Sbjct: 76 EMSSTFK 82


>gi|167772831|ref|ZP_02444884.1| hypothetical protein ANACOL_04219 [Anaerotruncus colihominis DSM
           17241]
 gi|167664764|gb|EDS08894.1| hypothetical protein ANACOL_04219 [Anaerotruncus colihominis DSM
           17241]
          Length = 278

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 12/101 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+  S  +G+  +++++          +AITD + +       Q     GI  I G 
Sbjct: 5   LHCHTRVS--DGSTGIDDVVLYAKRGGLDFVAITDHDTMAGVSRAEQLGRRCGIGVIAGA 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
                     +++         V  +  L    +  + L++
Sbjct: 63  ----------ELSAWDFVRKRKVHLLCYLPKNPDRLEGLMK 93


>gi|325263475|ref|ZP_08130209.1| phosphoesterase [Clostridium sp. D5]
 gi|324031184|gb|EGB92465.1| phosphoesterase [Clostridium sp. D5]
          Length = 299

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS +S  +G  S++ + +K A     AI I D +   +A E  +++   GIQ +   
Sbjct: 3  LHIHSGHSS-DGTYSVHELFEKAAEYGMEAIIIADHDTWEAAGEAQKESKDLGIQTLPAL 61

Query: 74 QLDIDMQDNL 83
          +L    +  +
Sbjct: 62 ELSCIDEGRM 71


>gi|261492020|ref|ZP_05988595.1| putative PHP family metal-dependent phosphoesterase [Mannheimia
          haemolytica serotype A2 str. BOVINE]
 gi|261312303|gb|EEY13431.1| putative PHP family metal-dependent phosphoesterase [Mannheimia
          haemolytica serotype A2 str. BOVINE]
          Length = 272

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +        +A+TD + +    E    A    ++ I G 
Sbjct: 5  LHAHSTAS--DGVLSPTELVQRAVEQGVTMLALTDHDTISGIQEAKNFAQNQPLELISGV 62


>gi|169632422|ref|YP_001706158.1| phosphoesterase [Acinetobacter baumannii SDF]
 gi|169151214|emb|CAO99894.1| putative phosphoesterase (PHP family) [Acinetobacter baumannii]
          Length = 283

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++      +   +A+TD + +         A    +Q I G 
Sbjct: 6  LHTHSNIS--DGTLSPELLVQAAVDVKLHTLALTDHDTMDGLQRARNAAQPHDLQIISGV 63


>gi|82703431|ref|YP_412997.1| PHP-like [Nitrosospira multiformis ATCC 25196]
 gi|82411496|gb|ABB75605.1| PHP-like protein [Nitrosospira multiformis ATCC 25196]
          Length = 279

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 71/174 (40%), Gaps = 8/174 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L+   +++  AA     +A+TD +++    E  + A   G+  I G 
Sbjct: 6   LHCHSTVS--DGLLTPTQLVEHAAARGVEVLALTDHDDIGGLEEARKAADKNGVLFIDGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST-AEGYQRLIELVSRMYLLDQGKQSVRIC 132
           ++ +  +        G    P  P +V  +ST  +G  R +   +    LD+    +   
Sbjct: 64  EISVSWRGQTVHIV-GLGIDPADPQLVEGLSTIRQG--RTMRARNIAAQLDKFG--IHGS 118

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               +     GLI     +   +++ +  +   V +K L+  K  +    +V+L
Sbjct: 119 FEGARRNAGNGLIGRMHFARFLVEQGYAKDVRTVFKKYLVKGKPGYAPHQWVSL 172


>gi|298531114|ref|ZP_07018515.1| PHP domain protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509137|gb|EFI33042.1| PHP domain protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 285

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G ++   ++         A+A+TD +     ++  Q     G++ + GC
Sbjct: 6   LHTHSTAS--DGTMTPYELVSHARNIGLKALALTDHDTTKGLMQALQAGNDLGLEVVPGC 63

Query: 74  QLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQR 111
           +L ++    + +     ++  P +   +  +      + 
Sbjct: 64  ELSVEYPGLMHILGLWLRSDAPALNKAMQELRDKRNMRN 102


>gi|193078352|gb|ABO13325.2| putative phosphoesterase (PHP family) [Acinetobacter baumannii
          ATCC 17978]
          Length = 283

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++      +   +A+TD + +         A    +Q I G 
Sbjct: 6  LHTHSNIS--DGTLSPELLVQAAVDVKLHTLALTDHDTMDGLQRARNAAQPHDLQIITGV 63


>gi|169794699|ref|YP_001712492.1| phosphoesterase [Acinetobacter baumannii AYE]
 gi|213157930|ref|YP_002320728.1| PHP domain protein [Acinetobacter baumannii AB0057]
 gi|215482286|ref|YP_002324468.1| PHP domain protein [Acinetobacter baumannii AB307-0294]
 gi|294839341|ref|ZP_06784024.1| PHP domain protein [Acinetobacter sp. 6013113]
 gi|294857021|ref|ZP_06794790.1| PHP domain protein [Acinetobacter sp. 6013150]
 gi|301347244|ref|ZP_07227985.1| PHP domain protein [Acinetobacter baumannii AB056]
 gi|301511790|ref|ZP_07237027.1| PHP domain protein [Acinetobacter baumannii AB058]
 gi|301595296|ref|ZP_07240304.1| PHP domain protein [Acinetobacter baumannii AB059]
 gi|169147626|emb|CAM85489.1| putative phosphoesterase (PHP family) [Acinetobacter baumannii
          AYE]
 gi|213057090|gb|ACJ41992.1| PHP domain protein [Acinetobacter baumannii AB0057]
 gi|213988056|gb|ACJ58355.1| PHP domain protein [Acinetobacter baumannii AB307-0294]
          Length = 283

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++      +   +A+TD + +         A    +Q I G 
Sbjct: 6  LHTHSNIS--DGTLSPELLVQAAVDVKLHTLALTDHDTMDGLQRARNAAQPHDLQIISGV 63


>gi|312138886|ref|YP_004006222.1| phosphatase [Rhodococcus equi 103S]
 gi|311888225|emb|CBH47537.1| putative phosphatase [Rhodococcus equi 103S]
          Length = 298

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 11/89 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  S   ++ K AA     +AITD +      E +  A  +G++ + G 
Sbjct: 5   LHTHSTAS--DGTDSPAELVRKAAASGVDVLAITDHDTTAGWKEAA-AALPSGLRLVRGM 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++  +         +G+   P    ++  
Sbjct: 62  EMSCE--------GRGEDGRPVAVHLLAY 82


>gi|315634273|ref|ZP_07889560.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Aggregatibacter segnis ATCC 33393]
 gi|315476863|gb|EFU67608.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Aggregatibacter segnis ATCC 33393]
          Length = 278

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L+   ++ +        +A+TD + +    E  Q+A +  ++ I G 
Sbjct: 6  LHCHSTAS--DGILTPTEVVLRAHEKGVNVLALTDHDTVAGVAEARQQAESLRMRLINGV 63

Query: 74 QLDIDMQDN 82
          ++    ++ 
Sbjct: 64 EISTLWENR 72


>gi|293605791|ref|ZP_06688164.1| DNA-directed DNA polymerase III alpha subunit [Achromobacter
            piechaudii ATCC 43553]
 gi|292815786|gb|EFF74894.1| DNA-directed DNA polymerase III alpha subunit [Achromobacter
            piechaudii ATCC 43553]
          Length = 166

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 2/55 (3%)

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +  ++  E           R   +V  +Q+ +T KG  + +VT  +         
Sbjct: 58   RAQLQPAEVLNTYPDKRVARACGIVTVRQRPQTSKG--VIFVTLEDETGPVNVVV 110


>gi|260557104|ref|ZP_05829320.1| metal-dependent phosphoesterase [Acinetobacter baumannii ATCC
          19606]
 gi|260409210|gb|EEX02512.1| metal-dependent phosphoesterase [Acinetobacter baumannii ATCC
          19606]
          Length = 283

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++      +   +A+TD + +         A    +Q I G 
Sbjct: 6  LHTHSNIS--DGTLSPELLVQAAVDVKLHTLALTDHDTMDGLQRARNAAQPHDLQIITGV 63


>gi|218780584|ref|YP_002431902.1| ribonuclease III [Desulfatibacillum alkenivorans AK-01]
 gi|218761968|gb|ACL04434.1| Ribonuclease III [Desulfatibacillum alkenivorans AK-01]
          Length = 535

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          +      + L +HS+ S  +G L+   IL      +  AIAITD + +   L   +    
Sbjct: 1  MASKDGRIDLHIHSTAS--DGTLTPQEILAAAKDLELRAIAITDHDTVDGTLNALESGIP 58

Query: 65 AGIQPIIGCQLDIDMQDNL 83
           G++ + G ++  D+    
Sbjct: 59 EGLEFVPGVEISADIPSPF 77


>gi|254362097|ref|ZP_04978219.1| possible PHP family metal-dependent phosphoesterase [Mannheimia
          haemolytica PHL213]
 gi|261494567|ref|ZP_05991049.1| putative PHP family metal-dependent phosphoesterase [Mannheimia
          haemolytica serotype A2 str. OVINE]
 gi|153093656|gb|EDN74615.1| possible PHP family metal-dependent phosphoesterase [Mannheimia
          haemolytica PHL213]
 gi|261309758|gb|EEY10979.1| putative PHP family metal-dependent phosphoesterase [Mannheimia
          haemolytica serotype A2 str. OVINE]
          Length = 272

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +        +A+TD + +    E    A    ++ I G 
Sbjct: 5  LHAHSTAS--DGVLSPTELVQRAVEQGVTMLALTDHDTISGIQEAKNFAQNQPLELISGV 62


>gi|308187011|ref|YP_003931142.1| Protein TrpH [Pantoea vagans C9-1]
 gi|308057521|gb|ADO09693.1| Protein TrpH [Pantoea vagans C9-1]
          Length = 305

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H+  S  +G L+  +++ +    +   +AITD +++    E  Q A    + 
Sbjct: 23 LHSHTRAS--DGLLTPADLVQRAVEMRVGVLAITDHDSVAGVEEAQQTARDHDLP 75


>gi|146306865|ref|YP_001187330.1| phosphotransferase domain-containing protein [Pseudomonas
          mendocina ymp]
 gi|145575066|gb|ABP84598.1| PHP C-terminal domain protein [Pseudomonas mendocina ymp]
          Length = 303

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +GAL+ + ++++  A     +A+TD + L    E  + A A  +Q + 
Sbjct: 18 VDLHCHSTAS--DGALAPSVLVERAHARGVRVLALTDHDTLEGLDEAQRTAAALDMQLVN 75

Query: 72 GCQLDIDMQ 80
          G +L     
Sbjct: 76 GIELSCTWG 84


>gi|294791399|ref|ZP_06756556.1| putative PHP domain protein [Scardovia inopinata F0304]
 gi|294457870|gb|EFG26224.1| putative PHP domain protein [Scardovia inopinata F0304]
          Length = 285

 Score = 56.5 bits (135), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 13/122 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+ YS  +G  +   ++ +        +AITD +   S     Q A AA +      
Sbjct: 8   LHCHTVYS--DGTCTPQELISQAQQKGLAGVAITDHDTTSS----WQPAKAASLSDKYPL 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                     ++T +       V + +         + L     +  L    +   RI  
Sbjct: 62  IR------GTEITAEAGKTSVHVLAYLYDCEDKAALE-LFARTRQARLERTHEMVDRISR 114

Query: 134 SW 135
            +
Sbjct: 115 DY 116


>gi|184159491|ref|YP_001847830.1| metal-dependent phosphoesterase [Acinetobacter baumannii ACICU]
 gi|294842543|ref|ZP_06787226.1| metal-dependent phosphoesterase [Acinetobacter sp. 6014059]
 gi|183211085|gb|ACC58483.1| predicted metal-dependent phosphoesterase (PHP family)
          [Acinetobacter baumannii ACICU]
 gi|322509404|gb|ADX04858.1| Putative phosphoesterase [Acinetobacter baumannii 1656-2]
          Length = 283

 Score = 56.5 bits (135), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++      +   +A+TD + +         A    +Q I G 
Sbjct: 6  LHTHSNIS--DGTLSPELLVQAAVDVKLHTLALTDHDTMDGLQRAKNAAQPHDLQIISGV 63


>gi|325676407|ref|ZP_08156085.1| PHP domain protein [Rhodococcus equi ATCC 33707]
 gi|325552585|gb|EGD22269.1| PHP domain protein [Rhodococcus equi ATCC 33707]
          Length = 298

 Score = 56.5 bits (135), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 11/89 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  S   ++ K AA     +AITD +      E +  A  +G++ + G 
Sbjct: 5   LHTHSTAS--DGTDSPAELVRKAAASGVDVLAITDHDTTAGWKEAA-AALPSGLRLVRGM 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++  +         +G+   P    ++  
Sbjct: 62  EMSCE--------GRGEDGRPVAVHLLAY 82


>gi|189485629|ref|YP_001956570.1| putative metal-dependent phosphoesterase [uncultured Termite
          group 1 bacterium phylotype Rs-D17]
 gi|170287588|dbj|BAG14109.1| putative metal-dependent phosphoesterase [uncultured Termite
          group 1 bacterium phylotype Rs-D17]
          Length = 291

 Score = 56.5 bits (135), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +V + +H++YS  +G  +   +++  +  +  AI+ITD + +    E  + A   G++ +
Sbjct: 10 YVDMHIHTNYS--DGVFAPKEVVEYASKMKLAAISITDHDCVDGIDEALEIASKTGLEIV 67

Query: 71 I 71
           
Sbjct: 68 P 68


>gi|119026183|ref|YP_910028.1| hypothetical protein BAD_1165 [Bifidobacterium adolescentis ATCC
          15703]
 gi|118765767|dbj|BAF39946.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 300

 Score = 56.5 bits (135), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            H+ +S  +G  +   ++++        +AI D +      E ++ +   G+  ++G +
Sbjct: 17 HCHTVFS--DGTETPRTLVEQARKLGLHGVAIADHDTTAGWDEATEASEEIGLPLLLGTE 74

Query: 75 LDIDMQD 81
          +    +D
Sbjct: 75 ITAVDED 81


>gi|18309997|ref|NP_561931.1| hypothetical protein CPE1015 [Clostridium perfringens str. 13]
 gi|18144676|dbj|BAB80721.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 280

 Score = 56.5 bits (135), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
               HS  S  +G LS   ++ +        IA+TD +      E  + A    IQ I 
Sbjct: 5  AEFHCHSLAS--DGTLSPKEVIAEAKKSGISLIALTDHDITSGLDEAKEAAKELDIQFIP 62

Query: 72 GCQLDIDMQ 80
          G +L  + +
Sbjct: 63 GIELSCEHK 71


>gi|224371667|ref|YP_002605831.1| putative metal-dependent phosphoesterase [Desulfobacterium
          autotrophicum HRM2]
 gi|223694384|gb|ACN17667.1| putative metal-dependent phosphoesterase [Desulfobacterium
          autotrophicum HRM2]
          Length = 307

 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 7  KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
          K P +  L  H++ S  +G  S  +++         A+ +TD + + +  E        G
Sbjct: 2  KGPFYADLHNHTTAS--DGDYSPQDLVAAAKKAGLSALGVTDHDTIDAVGEAIVAGDRHG 59

Query: 67 IQPIIGC 73
          ++ + G 
Sbjct: 60 LEVVPGV 66


>gi|121996959|ref|YP_001001746.1| phosphotransferase domain-containing protein [Halorhodospira
          halophila SL1]
 gi|121588364|gb|ABM60944.1| PHP C-terminal domain protein [Halorhodospira halophila SL1]
          Length = 282

 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          L  HSS S  +G L+   ++ + A      +A+TD + +    E    A   G++ +
Sbjct: 7  LHCHSSAS--DGHLAPAAVVHRAAERGVETLALTDHDTVAGIEEARAAAAPLGLRLV 61


>gi|260589536|ref|ZP_05855449.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Blautia
          hansenii DSM 20583]
 gi|260540104|gb|EEX20673.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Blautia
          hansenii DSM 20583]
          Length = 278

 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          ++ L VHS+ S  +G  + + ++         A A+TD +      E  + A  + ++ I
Sbjct: 4  YIDLHVHSTVS--DGTFTPSELVHYAIEKNLSAFALTDHDTTDGLEEAFKAAYGSNLEII 61

Query: 71 IGCQLDIDMQD 81
           G +L      
Sbjct: 62 PGIELSTTWNS 72


>gi|253575765|ref|ZP_04853100.1| PHP domain-containing protein [Paenibacillus sp. oral taxon 786
          str. D14]
 gi|251844808|gb|EES72821.1| PHP domain-containing protein [Paenibacillus sp. oral taxon 786
          str. D14]
          Length = 294

 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 2/58 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L  H+  S  +G       +          +AITD + +    E        G+  + 
Sbjct: 12 LHSHTQAS--DGMNKPAENVRLAKEKGLTGLAITDHDTVAGIEEALLAGKELGVDVVP 67


>gi|304438467|ref|ZP_07398407.1| PHP domain protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304368550|gb|EFM22235.1| PHP domain protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 276

 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          L +H+++S  +G  +   I++   A     I+ITD +++    E  +
Sbjct: 5  LHIHTTFS--DGRNTPEEIMEAAKAAGLRYISITDHDSVEGVTELYE 49


>gi|73748512|ref|YP_307751.1| phosphotransferase domain-containing protein [Dehalococcoides sp.
           CBDB1]
 gi|147669293|ref|YP_001214111.1| phosphotransferase domain-containing protein [Dehalococcoides sp.
           BAV1]
 gi|289432560|ref|YP_003462433.1| PHP domain protein [Dehalococcoides sp. GT]
 gi|73660228|emb|CAI82835.1| PHP domain protein [Dehalococcoides sp. CBDB1]
 gi|146270241|gb|ABQ17233.1| PHP C-terminal domain protein [Dehalococcoides sp. BAV1]
 gi|288946280|gb|ADC73977.1| PHP domain protein [Dehalococcoides sp. GT]
          Length = 219

 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 17/164 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VH++YS+ +      +++ K        I++ D      AL     A  + I+ II  
Sbjct: 6   LHVHTNYSM-DSNTQPKDLISKCVEKGINCISLCDHGTAEGALML---AKESPIKIIISE 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++     + + M  +   P        +    A+G      LV   +  D  + S  I  
Sbjct: 62  EVLTPHGEIMGMFLKESIPSGISVDECVSRIKAQG-----ALVCIPHPYDGLRGSALIDT 116

Query: 134 SWLQEIGTEGLIMLTGGSSGPID--RAFFFNSSQVAEKRLLTFK 175
             L+ + +EG I         +   R     S + A K    + 
Sbjct: 117 E-LERLASEGKI-----DVLEVFNSRTLLNGSLKKARKLAKQYD 154


>gi|300114808|ref|YP_003761383.1| PHP domain-containing protein [Nitrosococcus watsonii C-113]
 gi|299540745|gb|ADJ29062.1| PHP domain protein [Nitrosococcus watsonii C-113]
          Length = 278

 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L    ++ + A      +A+TD +      E S       +  I G 
Sbjct: 8  LHTHSTAS--DGTLKPAELVRRAAGQGVNVLALTDHDCTAGLTEASVATEDLALNLIPGV 65

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 66 EISVTWGGR 74


>gi|225181650|ref|ZP_03735090.1| PHP domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167631|gb|EEG76442.1| PHP domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 513

 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH+ +S  +G   +  ++   A      +A+TD 
Sbjct: 277 LHVHTDWS--DGTADVEKMVKAAAELGYEYLAVTDH 310


>gi|298243918|ref|ZP_06967725.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297556972|gb|EFH90836.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 293

 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 67/210 (31%), Gaps = 33/210 (15%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +G  S   +L          +A+TD ++     E  + A    I  + 
Sbjct: 5   VDLHTHSTAS--DGIYSPTELLSHAHEAGLKVMALTDHDSTNGLDEALEAARQYDIDLLP 62

Query: 72  GCQLDIDMQDNLKMTNQG--KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           G +L+ D             +   P    I+  +  A                   +   
Sbjct: 63  GIELNTDFSGGEVHVLGYFLEYKRPAFQHILQSLRNA------------------REHRG 104

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-FKKLFGDRL--YVNL 186
           +  +  L E G    I +T      I +        VA   L   + +   +    Y+  
Sbjct: 105 QRMVEQLNEAG----IHITWERVREIAQGSV-GRPHVARALLEAGYVQSIPEAFEKYIGN 159

Query: 187 QRHRGYDRYRESQVVQ---LAYTHELPLVA 213
            +     RY+ + +     +A  + LP+VA
Sbjct: 160 GQVGYVPRYKLAPIDAVRLIASANGLPVVA 189


>gi|220933066|ref|YP_002509974.1| PHP domain protein [Halothermothrix orenii H 168]
 gi|219994376|gb|ACL70979.1| PHP domain protein [Halothermothrix orenii H 168]
          Length = 281

 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L +HS+YS  +G+ +   ++   A      IA+ D + +    E  +     GI+ I 
Sbjct: 5  LHIHSTYS--DGSYTPAELVSYAAKKGLKTIAVADHDTVEGVAEALKYGRERGIEVIP 60


>gi|256750816|ref|ZP_05491701.1| PHP domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750399|gb|EEU63418.1| PHP domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 108

 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F  L +HS  S  +G  S + ++          I++TD + +    E  + +    I+ I
Sbjct: 2  FADLHMHSKAS--DGTNSPSEVVRLAKEHGLSCISLTDHDTVDGLEEAMEASAKYEIEVI 59

Query: 71 IGCQLDIDMQD 81
           G + +   Q+
Sbjct: 60 PGIEFNCYYQN 70


>gi|150400010|ref|YP_001323777.1| phosphotransferase domain-containing protein [Methanococcus
           vannielii SB]
 gi|150012713|gb|ABR55165.1| PHP domain protein [Methanococcus vannielii SB]
          Length = 295

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 9/113 (7%)

Query: 5   LEKSPSFVHLQVHSSYS---------LLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
           +EK  S   L +H+ YS           +       ++    A+    IA+TD N++  A
Sbjct: 1   MEKEISRADLHIHTKYSGMMKYMGLKFPDSVEEPLKVMKYAKANNMDVIAVTDHNSIKGA 60

Query: 56  LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           LE  +     GI+ ++G ++     + L +      P    P   +     +G
Sbjct: 61  LETKKFEKEFGIEVVVGSEIMSTEGEILGLFLNEDIPKRLSPEETIDKIREQG 113


>gi|33322977|gb|AAQ07225.1|AF496533_1 DNA polymerase III, alpha chain [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 68

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%)

Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
           ++ FE FL      +PD D++F  D +     +++  +G     +  T G+L  K A+  
Sbjct: 2   NIPFETFLGFHGDKVPDIDLNFSGDXQPVAHNFIRVMFGPNHSFKAGTVGTLADKKAIGY 61

Query: 461 VGRALQ 466
                 
Sbjct: 62  AKHYQD 67


>gi|117620611|ref|YP_857425.1| phosphotransferase domain-containing protein [Aeromonas
          hydrophila subsp. hydrophila ATCC 7966]
 gi|117562018|gb|ABK38966.1| PHP domain containing protein [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
          Length = 293

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G LS   ++ + AA     +A+TD + L     +  +  A    ++ + 
Sbjct: 5  LHCHTTAS--DGVLSPAELVRRAAAQGVEVLAVTDHDTLAGLDEVRRTIDAEQLPLRLVS 62

Query: 72 GCQLDIDMQDN 82
          G ++    + +
Sbjct: 63 GVEISTGWEHH 73


>gi|154488992|ref|ZP_02029841.1| hypothetical protein BIFADO_02302 [Bifidobacterium adolescentis
          L2-32]
 gi|154083129|gb|EDN82174.1| hypothetical protein BIFADO_02302 [Bifidobacterium adolescentis
          L2-32]
          Length = 300

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            H+ +S  +G  +   ++ +        +AI D +      E ++ +   G+  ++G +
Sbjct: 17 HCHTVFS--DGTETPRTLVAQARKLGLHGVAIADHDTTAGWDEATEASEEIGLPLLLGTE 74

Query: 75 LDIDMQD 81
          +    +D
Sbjct: 75 ITAVDED 81


>gi|219853268|ref|YP_002467700.1| PHP domain protein [Methanosphaerula palustris E1-9c]
 gi|219547527|gb|ACL17977.1| PHP domain protein [Methanosphaerula palustris E1-9c]
          Length = 221

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
          L +H+++S  +G  S+  IL +       AIAITD + +  A      A 
Sbjct: 6  LHIHTNHS-RDGESSVEEILLQAEKVGLDAIAITDHDTMDGA---WYAAK 51


>gi|294495750|ref|YP_003542243.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
 gi|292666749|gb|ADE36598.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
          Length = 570

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 79/230 (34%), Gaps = 17/230 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VH+SYS  +G  SLN+++ +        I ITD +         + A   G   +   
Sbjct: 342 LHVHTSYS--DGTDSLNSMIAQADKLGYEYIGITDHS------RSRKIAGGLGTDKVKEQ 393

Query: 74  QLDID-MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             +ID ++D+  +          +P   L           +++V             ++ 
Sbjct: 394 WKEIDGLRDDFDIEILKGIEVDILPDGSLDCPDDI--LEEMDIVVGSIHSGYKSPKKKMT 451

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              +  +  E L +L   +S  I       + +V   ++       G  L +N Q  R  
Sbjct: 452 ERIITALQNEFLHVLGHPTSRKIG---IREAYEVDLDKIFETAAENGKLLEINSQPERLD 508

Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                  ++  A  ++L    +++S   ++ D+  + V  A         
Sbjct: 509 ---LNDNLILQAKEYDLKFCISSDSHSSAQLDFMKYGVGQARRGWLTKDD 555


>gi|227499054|ref|ZP_03929191.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904503|gb|EEH90421.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 282

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--KACAAGIQPII 71
           L +H+++S  +G  +   ++ +       A+AITD +N  +  E  +   A   GI  I 
Sbjct: 5   LHMHTTFS--DGVNTPEELVREAEKAHLCAMAITDHDNTLAYDEAKKVIDARQDGIHLIR 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY-QRLIELVSRMYLLDQ 124
           G ++D D +                     L     G  +R+++++ ++  L  
Sbjct: 63  GVEMDTDYKGKDVHVLGFHFDPAVPIFQQALAWNRSGRVERVMKIIEKIQSLGY 116


>gi|189485717|ref|YP_001956658.1| putative histidinol phosphatase [uncultured Termite group 1
          bacterium phylotype Rs-D17]
 gi|170287676|dbj|BAG14197.1| putative histidinol phosphatase [uncultured Termite group 1
          bacterium phylotype Rs-D17]
          Length = 217

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+ +S  +G LS + ++ +       AIA+TD 
Sbjct: 4  LHTHTFFS--DGVLSPSELVYRAKYKGYTAIALTDH 37


>gi|119505058|ref|ZP_01627134.1| PHP-like protein [marine gamma proteobacterium HTCC2080]
 gi|119459040|gb|EAW40139.1| PHP-like protein [marine gamma proteobacterium HTCC2080]
          Length = 280

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            H++ S  +GALS + +L + A     A+A+TD + L    + +Q   A GI  + G +
Sbjct: 12 HTHTTAS--DGALSPSQLLLRAAERGVQALALTDHDTLSG-WQAAQALEADGIAIVCGAE 68

Query: 75 LDIDMQ 80
          L     
Sbjct: 69 LSCQWG 74


>gi|222479047|ref|YP_002565284.1| PHP domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222451949|gb|ACM56214.1| PHP domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 227

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +G   ++ +L++ AA    A+A+TD + + +++E ++KA   G+  I+
Sbjct: 4  VELHTHSALSY-DGRDPVDLLLEQAAAVGLDALAVTDHDEIDASIEAAEKAPDYGLVGIV 62

Query: 72 GCQLDIDMQD 81
          G ++      
Sbjct: 63 GMEVTSAAGH 72


>gi|312602646|ref|YP_004022491.1| DNA polymerase III subunit alpha [Burkholderia rhizoxinica HKI 454]
 gi|312169960|emb|CBW76972.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia
            rhizoxinica HKI 454]
          Length = 106

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                       G   R   +V  +Q+  T KG  + +VT    +       +P
Sbjct: 2    LPAAALQRYRDGQLARACGLVTVRQRPGTAKG--VLFVTLEVESGHTNVIIWP 52


>gi|304388349|ref|ZP_07370462.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           meningitidis ATCC 13091]
 gi|304337666|gb|EFM03822.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           meningitidis ATCC 13091]
          Length = 278

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSTVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADKLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +  +                    LL    +G  RL  L +    L++
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQG--RLKRLEAIAAKLEK 110


>gi|317470626|ref|ZP_07930012.1| PHP domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901917|gb|EFV23845.1| PHP domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 277

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 56/172 (32%), Gaps = 6/172 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS  S  +G L    +L         A A+TD + +             GI  + G 
Sbjct: 4   LHLHSDAS--DGTLKPAEVLRAAKEKGLYAFALTDHDTVAGIPPILHSGELTGIHFMPGI 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           +L  + + +                +    +T EG +R     +   +    +  + + L
Sbjct: 62  ELSCEAEKHEIHILGYHIDICNQNLL----NTLEGLRRGRRQRNLSMIEKFREDGIPMTL 117

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             L     + +I     +   I+  +  N  Q  +K +    + +  + Y  
Sbjct: 118 EKLLHGNEQTVITRAHFARVLIEEGYCANKEQAFKKYVGDGCRYYIPKPYFA 169


>gi|147920239|ref|YP_685994.1| phosphoesterase [uncultured methanogenic archaeon RC-I]
 gi|110621390|emb|CAJ36668.1| predicted phosphoesterase [uncultured methanogenic archaeon RC-I]
          Length = 296

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 75/206 (36%), Gaps = 18/206 (8%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +H++ S  +G  ++  +    +      ++ITD + +        +A   GI+ I G +
Sbjct: 6   HIHTTCS--DGRKTVPEVFQLASELGIRLLSITDHDTVAGYPAAFGEAEKHGIRLIPGVE 63

Query: 75  LDIDMQDNL-------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
                +D            +    P  T   ++      E   RL++ V+  YL ++ + 
Sbjct: 64  FSTRNEDGHVDVHVVGLRIDPDYAPLQTELKLLADAR-VEARMRLLDRVN-AYLAEKYEG 121

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              +    +++  + G I+     +  I      +  ++ E+ L    +L        ++
Sbjct: 122 IEPVKFESVRKRVS-GTIVGKPHIAAEIIETARRSGIEIPEEELYAIFRLP------EVE 174

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVA 213
             + Y+      +  +     LP++A
Sbjct: 175 TKKAYELTMAECIELIKAAGGLPVLA 200


>gi|269122194|ref|YP_003310371.1| PHP domain protein [Sebaldella termitidis ATCC 33386]
 gi|268616072|gb|ACZ10440.1| PHP domain protein [Sebaldella termitidis ATCC 33386]
          Length = 279

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L +HS YS  +G  S++ ++ +        +++TD + +    E +++     I+ I 
Sbjct: 2  VDLHMHSLYS--DGTFSVSELVKRSGEKGIKILSLTDHDTVEGLAEAAKECIENNIKFIN 59


>gi|289673970|ref|ZP_06494860.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae FF5]
          Length = 94

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 12/94 (12%)

Query: 814 IQIMPPSVNTPCVDFKVGDN---------RIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
           ++I P  V     D  +             I   L  ++      A  I  A A +PF  
Sbjct: 1   MEIRPVDVRYSDWDCSLEPLDHPDRTRNLAIRLGLRMVRSFREEDALRIEAARAKRPFVD 60

Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             D   R +    + R  E+L  +GAL      R
Sbjct: 61  ATDLTLRAEL---DSRAAEALADSGALRGLIGHR 91


>gi|257439574|ref|ZP_05615329.1| putative phosphoesterase PHP [Faecalibacterium prausnitzii A2-165]
 gi|257197941|gb|EEU96225.1| putative phosphoesterase PHP [Faecalibacterium prausnitzii A2-165]
          Length = 282

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 3/110 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++YS  +G++ +  +    A     A+AI+D + L S           G++ I   
Sbjct: 5   LHNHTTYS--DGSVPVARLPLMAARVGLDAMAISDHDTLRSVQYAYDHPVQDGVKLIPAT 62

Query: 74  Q-LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
           +    D +   ++      P P   ++          +    L S   L 
Sbjct: 63  ELTGYDYERQHRVHLLAYWPDPESEALRRHCDIMRQRRNECCLQSARELE 112


>gi|83644950|ref|YP_433385.1| metal-dependent phosphoesterase [Hahella chejuensis KCTC 2396]
 gi|83632993|gb|ABC28960.1| predicted metal-dependent phosphoesterases (PHP family) [Hahella
          chejuensis KCTC 2396]
          Length = 286

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--CAAGIQPII 71
          L  H++ S  +G+ S   +L+   +    A+AITD + +  A      +     GI+ I 
Sbjct: 10 LHCHTTAS--DGSRSPAELLELAVSRGLTALAITDHDTVEGARSLMNASLDKKQGIRLIT 67

Query: 72 GCQLDI 77
          G +   
Sbjct: 68 GAEFSC 73


>gi|120598423|ref|YP_962997.1| phosphotransferase domain-containing protein [Shewanella sp.
          W3-18-1]
 gi|146293498|ref|YP_001183922.1| phosphotransferase domain-containing protein [Shewanella
          putrefaciens CN-32]
 gi|120558516|gb|ABM24443.1| PHP C-terminal domain protein [Shewanella sp. W3-18-1]
 gi|145565188|gb|ABP76123.1| PHP C-terminal domain protein [Shewanella putrefaciens CN-32]
 gi|319426803|gb|ADV54877.1| PHP family metal-dependent phosphoesterase, TrpH [Shewanella
          putrefaciens 200]
          Length = 286

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL--EFSQKACAAGIQPII 71
          L  H++ S  +G L+ + ++ +         AITD + +          +A AA ++ I 
Sbjct: 10 LHSHTTAS--DGQLTPSELVARALEKGVQLFAITDHDTVAGLPEARAFNQAQAAPLKLIS 67

Query: 72 GCQLDIDMQD 81
          G ++      
Sbjct: 68 GVEISTRWNS 77


>gi|332174587|gb|AEE23841.1| PHP domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 288

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 78/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACA------A 65
           L  H+ YS  +G LS   ++D+    Q   +AITD + + +       Q           
Sbjct: 5   LHCHTYYS--DGQLSPVELVDRANNMQVDVLAITDHDTVQALDEARAHQAKQKRLMHIVN 62

Query: 66  GIQPIIGCQLDI-----------------------DMQDNLKMTNQGKTPFPTVPSIVLL 102
           GI+                                + +D        K     V +++  
Sbjct: 63  GIELSTSWHNFDIHILGLNVNKDDELFQQRLVEQKNERDERAQKMADKLAKAGVENVLDD 122

Query: 103 VSTAEGYQRLIE------LVSRMYLLD---------QGKQSVRICLSWLQEIGTEGLIML 147
                G  +L        LV R  + D            +   +   W+        I  
Sbjct: 123 AKLLSGEGQLTRAHFARVLVERKEVRDFESAFKKYLGKGKRAHVKPRWISIEEAVQWIHD 182

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
            GG +       +  +++   + +  FK+  GD +      H   +  +   +V+LA  +
Sbjct: 183 AGGKAVIAHPGHYDMTAKWLRRLVAQFKEAGGDGI---ETTHARINPEKRKLIVELATEY 239

Query: 208 ELPLVATNNSLFLSEE 223
            L   A ++  F+S  
Sbjct: 240 NLQASAGSDFHFVSRW 255


>gi|209694704|ref|YP_002262632.1| hypothetical protein VSAL_I1155 [Aliivibrio salmonicida LFI1238]
 gi|208008655|emb|CAQ78840.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 281

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 4/116 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI-IG 72
           L  H++ S  +G LS   ++++         AITD + +    E  +      +    I 
Sbjct: 5   LHSHTTAS--DGRLSPTELVERAVNFDVKVFAITDHDTVAGLAEAHKAIKEKDLPLHLID 62

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                 +  N  +   G       P ++ L+   E  +R+         L++    
Sbjct: 63  GIEISTLWSNKDIHVVGLNLDINHPELLALIEQQEA-RRIARAEKMAERLERAGYP 117


>gi|167628565|ref|YP_001679064.1| hypothetical protein HM1_0436 [Heliobacterium modesticaldum Ice1]
 gi|167591305|gb|ABZ83053.1| conserved domain protein [Heliobacterium modesticaldum Ice1]
          Length = 286

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 9/101 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G+L+   ++     +    +A+TD + +    E  +     G+Q + G 
Sbjct: 6   LHSHSTAS--DGSLTPRELVALAKREGVGLMALTDHDTVDGVAEARKAGEELGVQILNGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
           +L +D +   +M   G    P  P +       EG +RLI 
Sbjct: 64  ELSVDHEHR-EMHLLGYRIDPGNPVL------QEGLRRLIH 97


>gi|304310658|ref|YP_003810256.1| Predicted metal-dependent phosphoesterase [gamma proteobacterium
           HdN1]
 gi|301796391|emb|CBL44599.1| Predicted metal-dependent phosphoesterase [gamma proteobacterium
           HdN1]
          Length = 303

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 51/155 (32%), Gaps = 18/155 (11%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             HS+YS  +G+ +   +   +AA      A+TD + +         A A GI+ + G +
Sbjct: 6   HCHSTYS--DGSQTPEWLAQAMAAAGVELFALTDHDTVAGVHRVQIAAQANGIRALAGVE 63

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
           +      +                +  L S     +RL                 RIC  
Sbjct: 64  ISCRWGAHEIHVVGIHVDALATALLEQLASQHA--RRLARAE-------------RICQK 108

Query: 135 WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            LQ+ G   +  L+   + P + A        A+ 
Sbjct: 109 -LQKQGLPDVFALSLHLAQPAEPAQPAEPLDAAQA 142


>gi|291456380|ref|ZP_06595770.1| putative PHP domain protein [Bifidobacterium breve DSM 20213]
 gi|291381657|gb|EFE89175.1| putative PHP domain protein [Bifidobacterium breve DSM 20213]
          Length = 297

 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 46/109 (42%), Gaps = 8/109 (7%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+++S  +G  +   + ++  A     ++I+D +      +    A   G+ P++   
Sbjct: 21  HCHTAFS--DGTETPAVLAEQSKAVGLKGVSISDHDTTAGWPQAEAAARKVGL-PLLRGT 77

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGY----QRLIELVSR 118
                 D++ +   G    PT   IV L   T +      QR++EL+S+
Sbjct: 78  EITATDDSVSVHMLGFQYDPTNQCIVDLFARTRQARLRRTQRMVELMSK 126


>gi|327401532|ref|YP_004342371.1| PHP domain-containing protein [Archaeoglobus veneficus SNP6]
 gi|327317040|gb|AEA47656.1| PHP domain protein [Archaeoglobus veneficus SNP6]
          Length = 216

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VHS +S  +G  S+  ++          I+ITD N +  +LE  +     G+  +I  
Sbjct: 6  LHVHSDHS-NDGLDSIKALIAAALEKGLNCISITDHNTVNGSLEAIEYVEEEGLPILIIP 64

Query: 74 QLDIDMQDN 82
           ++I   D 
Sbjct: 65 GVEISTSDG 73


>gi|255319390|ref|ZP_05360606.1| PHP domain protein [Acinetobacter radioresistens SK82]
 gi|262380854|ref|ZP_06074005.1| metal-dependent phosphoesterase [Acinetobacter radioresistens
           SH164]
 gi|255303526|gb|EET82727.1| PHP domain protein [Acinetobacter radioresistens SK82]
 gi|262297489|gb|EEY85407.1| metal-dependent phosphoesterase [Acinetobacter radioresistens
           SH164]
          Length = 288

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++    A     +A+TD +N+        KAC+  ++     
Sbjct: 6   LHTHSNIS--DGTLSPEALVHAAVAAGVHTLALTDHDNMDGIQRA--KACSQTLEAPYSL 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
           ++    + + + +         V  + L +    
Sbjct: 62  RIIPGAEISSQWSRPATKKSYGVHVVALGMQNPA 95


>gi|296242743|ref|YP_003650230.1| PHP domain-containing protein [Thermosphaera aggregans DSM 11486]
 gi|296095327|gb|ADG91278.1| PHP domain protein [Thermosphaera aggregans DSM 11486]
          Length = 229

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-AGIQPIIG 72
           L +HS YS  +G  S   I+    A+    I+ITD N    ++   + A +   I  I G
Sbjct: 7   LHIHSYYS--DGRASPREIIAYAVANGLSVISITDHNTFQGSIAAMKIASSFKNIMVIPG 64

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
            ++  D  D L    +       + +++       
Sbjct: 65  VEVRTDEGDILVYCYEEFDFPRRLETLLDKARDNN 99


>gi|329904389|ref|ZP_08273783.1| putative metal-dependent phosphoesterases (PHP family)
          [Oxalobacteraceae bacterium IMCC9480]
 gi|327547993|gb|EGF32732.1| putative metal-dependent phosphoesterases (PHP family)
          [Oxalobacteraceae bacterium IMCC9480]
          Length = 282

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          L  HS++S  +G L+   +  +  A+     A+TD + +    E    A A  +Q I
Sbjct: 6  LHCHSTFS--DGLLAPAQVAARAKANGVDVWALTDHDEVSGIAEARHAAQALDLQFI 60


>gi|284162715|ref|YP_003401338.1| PHP domain protein [Archaeoglobus profundus DSM 5631]
 gi|284012712|gb|ADB58665.1| PHP domain protein [Archaeoglobus profundus DSM 5631]
          Length = 209

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          L +HS++S  +G  S+  IL+   A    AI+ITD +N+  +LE  +      +  +
Sbjct: 7  LHIHSNHS--DGRSSVREILETAIAKGLKAISITDHDNINGSLEAIEIVKEEHLPIV 61


>gi|155212706|gb|ABT17427.1| probable histidinol phosphatase [Halorubrum sp. TP009]
          Length = 235

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +G   +  +L++ AA    A+A+TD + + +++E ++KA   G+  ++
Sbjct: 12 VELHAHSALSY-DGRDPVELLLEQAAAVGLDALAVTDHDEIDASIEAAEKAPDYGLVGVV 70

Query: 72 GCQLDIDMQD 81
          G ++   +  
Sbjct: 71 GMEVTSAVGH 80


>gi|288941909|ref|YP_003444149.1| PHP domain-containing protein [Allochromatium vinosum DSM 180]
 gi|288897281|gb|ADC63117.1| PHP domain protein [Allochromatium vinosum DSM 180]
          Length = 286

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 11/115 (9%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L+   ++ +  A     +A+TD +N     E  + A   G+  I G 
Sbjct: 7   LHTHSTAS--DGTLTPTELVVRAGAAGVQVLALTDHDNTDGLAEAGRAADDLGLTLIPGV 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           ++ +     L +   G    P    +        G  RL+E   R +  ++  + 
Sbjct: 65  EISVTWNT-LTVHVVGLRLDPANSDL------QAGLARLMEF--RAWRAEEIGRR 110


>gi|118443644|ref|YP_877742.1| metal-dependent phosphoesterase [Clostridium novyi NT]
 gi|118134100|gb|ABK61144.1| Predicted metal-dependent phosphoesterase (PHP family)
          [Clostridium novyi NT]
          Length = 277

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +H++ S  +G LS   +++    +    IAITD +N F   E        G++ I 
Sbjct: 8  HLHTTAS--DGKLSPYELVNLAKEEGFDIIAITDHDNTFGINEAITCGTEVGVKVIP 62


>gi|325123443|gb|ADY82966.1| putative phosphoesterase (PHP family) [Acinetobacter
          calcoaceticus PHEA-2]
          Length = 283

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++          +A+TD + +         A    +  I G 
Sbjct: 6  LHTHSNIS--DGTLSPELLVQAAIDVNLHTLALTDHDTMDGLQRAKIAAQGHDLNIISGA 63


>gi|282900858|ref|ZP_06308796.1| PHP-like protein [Cylindrospermopsis raciborskii CS-505]
 gi|281194257|gb|EFA69216.1| PHP-like protein [Cylindrospermopsis raciborskii CS-505]
          Length = 228

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 27/151 (17%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           +  P   +   H+ +S  +G L  + ++++  A     +AITD ++    +E  +KA   
Sbjct: 25  QSCPQLFNFHAHTVFS--DGKLHPHVLMEQAIAIGLKGLAITDHHS----VEGYEKAK-- 76

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS-TAEGYQRLIELVSRMYLLDQ 124
                           N     Q   PF   P +   V   AE     + ++S  + ++ 
Sbjct: 77  ----------------NWLEEWQCHHPFSPAPHLWSGVEINAELLDVEVHILSYSFEVEH 120

Query: 125 GKQSVRICLSWL--QEIGTEGLIMLTGGSSG 153
            +    +       +E     +I     + G
Sbjct: 121 HRMKPYLQREAAIGEEYKALNVIAAVHDAGG 151


>gi|15677660|ref|NP_274821.1| hypothetical protein NMB1824 [Neisseria meningitidis MC58]
 gi|7227077|gb|AAF42159.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|316984427|gb|EFV63400.1| PHP domain protein [Neisseria meningitidis H44/76]
 gi|325139644|gb|EGC62183.1| PHP domain protein [Neisseria meningitidis CU385]
 gi|325200885|gb|ADY96340.1| PHP domain protein [Neisseria meningitidis H44/76]
          Length = 278

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSTVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADKLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +  +                    LL    +G  RL  L +    L++
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRKG--RLKRLEAIAAKLEK 110


>gi|307352725|ref|YP_003893776.1| PHP domain-containing protein [Methanoplanus petrolearius DSM
          11571]
 gi|307155958|gb|ADN35338.1| PHP domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 222

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L VH+ YS  +G  S+ +I+          IAITD + +  A
Sbjct: 6  LHVHTKYS-RDGESSVEDIIRMAEKRGLDVIAITDHDTVGGA 46


>gi|108758872|ref|YP_630956.1| hypothetical protein MXAN_2739 [Myxococcus xanthus DK 1622]
 gi|108462752|gb|ABF87937.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 272

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L  H++ S  +G  +   +L + AA     +AITD + +    E    A A G++ + 
Sbjct: 4  LHSHTTAS--DGQYAPTELLARAAAAGVTVLAITDHDTVAGLAEAEVAARAHGVELVP 59


>gi|84494623|ref|ZP_00993742.1| hypothetical protein JNB_07494 [Janibacter sp. HTCC2649]
 gi|84384116|gb|EAP99996.1| hypothetical protein JNB_07494 [Janibacter sp. HTCC2649]
          Length = 281

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 81/251 (32%), Gaps = 26/251 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  S   ++    A     IAITD +      E  + A   GI  + G 
Sbjct: 5   LHAHSTAS--DGTESPAELVAAAKAAGLTTIAITDHDTTAGWDEAVEAAIHEGIGLVRGI 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSI---VLLVSTAEGYQRLIELVSRMYLLDQGK--QS 128
           ++    +D   +   G  P P  P +   +     +         VSRM  + Q      
Sbjct: 63  EISCS-RDYRSIHLLGYLPDPDDPRLAIELARARDSR--------VSRMDRMVQRMADDG 113

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
           + I +  ++     G  +     +  +  +        A + LL      G + YV    
Sbjct: 114 IPITIEEVRAQVAPGATLGRPHLADALVVSGVVPDRDEAFRDLL----HDGSKYYVG--- 166

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATN-NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H   D     ++V+ A    +P++A        +  D    +   A         +D   
Sbjct: 167 HYAPDPVAAIKLVRGA--GGVPVLAHPFAMRTATISDEMVQEWAAAGLGGLEAHHRDHEP 224

Query: 248 VTPDHYLKNRS 258
              +  ++   
Sbjct: 225 ADVERAIRLAE 235


>gi|261337447|ref|ZP_05965331.1| PHP domain protein [Bifidobacterium gallicum DSM 20093]
 gi|270277837|gb|EFA23691.1| PHP domain protein [Bifidobacterium gallicum DSM 20093]
          Length = 288

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 74/260 (28%), Gaps = 54/260 (20%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+ +S  +G  +   ++          +AITD +      E  Q A   G QP++  
Sbjct: 12  LHCHTVFS--DGTETPTALVRLSREIGLHGVAITDHDTTAGWQEAEQAAVTIG-QPLMRG 68

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGY----QRLIELVSR---------- 118
                    + +        P    I  L  +T +G     +R++ L+S+          
Sbjct: 69  TEITAHVHGVSVHMLAYLYNPHSQHIRELFETTRQGRLERTKRMVALMSKDLPISWDDVL 128

Query: 119 MYLLDQGK---QSVRICLSWLQE-------IGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
             +    +       I  + +            +G +  +     P          +   
Sbjct: 129 AQVKQGSRTTIGRPHIADALVAAGVYRDRNEAFQGAVASSSPYYLPTPSPTAQQVVEAIR 188

Query: 169 -----------------------KRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAY 205
                                  +++        D L V    HRG    +  ++++LA 
Sbjct: 189 DAGGVTVIAHAADPSRNKHVLSDEQIRELADQGLDGLEV---WHRGNPEDQRRRLLELAR 245

Query: 206 THELPLVATNNSLFLSEEDY 225
              L +   ++     + + 
Sbjct: 246 QCHLLVTGGSDWHGAGKPNA 265


>gi|261367114|ref|ZP_05979997.1| putative PHP domain protein [Subdoligranulum variabile DSM 15176]
 gi|282571237|gb|EFB76772.1| putative PHP domain protein [Subdoligranulum variabile DSM 15176]
          Length = 287

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/110 (11%), Positives = 33/110 (30%), Gaps = 2/110 (1%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+++S  +G+     +           +AI+D +++             G+  I   
Sbjct: 5   LHTHTTFS--DGSTPAEKLPFLAKCAGMTHLAISDHDSMRGIRYAYAHPTQEGVHLIPAI 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
           ++     +     +           +          +R+  L S   L +
Sbjct: 63  EMTAYDYERAHRVHLLCYWPDDCAPLAEFCDMMAERRRVAVLQSCRELEE 112


>gi|163733307|ref|ZP_02140750.1| DNA polymerase III alpha subunit, putative [Roseobacter litoralis Och
            149]
 gi|161393095|gb|EDQ17421.1| DNA polymerase III alpha subunit, putative [Roseobacter litoralis Och
            149]
          Length = 100

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   + +A +V+ +Q+  T KG  + ++T  +         +
Sbjct: 5    PQNARVAVAGIVILRQRPGTAKG--VIFLTLEDETGVVNVIVW 45


>gi|270308859|ref|YP_003330917.1| PHP C-terminal domain protein [Dehalococcoides sp. VS]
 gi|270154751|gb|ACZ62589.1| PHP C-terminal domain protein [Dehalococcoides sp. VS]
          Length = 287

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 79/253 (31%), Gaps = 48/253 (18%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA------ 65
           V L +H++ S  +G  S  NI+ K A      IAI D +NL       + A         
Sbjct: 5   VDLHIHTTVS--DGVHSPENIIAKAAKVNMEYIAICDHDNLGGVGIALEAARKYPKLRVI 62

Query: 66  -GIQP--------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            G++         +      +D +D        +     V     +V    G    I   
Sbjct: 63  PGVEISTDYSGGDVHILGYFVDYKDPFLNETLTEMRRSRVERARDMVIKLNGLGMEISWQ 122

Query: 117 SRMYLLDQGK-QSVRICLSWLQEIGTEGL-------IMLTGGSSGPIDRAFFFNSSQVAE 168
               +  +G      I  + L++   + +       I    G  GP        S + A 
Sbjct: 123 KVSEIAGEGTVGRPHIAAAMLEKGYIQNMGEAFDKFI----GRGGPAYVERIKMSPEEAV 178

Query: 169 KRLLTF---------KKLFGDRLYVN---------LQRH-RGYDRYRESQVVQLAYTHEL 209
           + +L+            +      V          L+ H  G++  +   +V+LA  H L
Sbjct: 179 RLVLSCGGIPVMAHPLTIMDHEPMVERLVQAGLMGLECHYGGFNPQQIDGLVKLAAKHNL 238

Query: 210 PLVATNNSLFLSE 222
                ++   L E
Sbjct: 239 LTTGGSDYHGLDE 251


>gi|308271417|emb|CBX28025.1| hypothetical protein N47_G33490 [uncultured Desulfobacterium sp.]
          Length = 302

 Score = 55.4 bits (132), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L +HS+ S  +G L  N IL         AIAITD + +      S++A   GI 
Sbjct: 23 LHIHSNAS--DGTLYPNEILALAKKLGLSAIAITDHDTIDG----SKEAIETGIP 71


>gi|281415805|ref|ZP_06247547.1| predicted metal-dependent phosphoesterase, PHP family protein
           [Micrococcus luteus NCTC 2665]
          Length = 283

 Score = 55.4 bits (132), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 65/206 (31%), Gaps = 15/206 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G     +++   A      +A+TD +      E +  A   G+  + G 
Sbjct: 6   LHTHSTES--DGTEPPADVVRAAARVGLDGLALTDHDTTAGWAEAAHAARETGLTLVPGM 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++     D + +        P  P+++       G  R   L+    ++ +      I  
Sbjct: 64  EMSCTSADGVSVHVLSYLHDPEDPALL----REVGLARDARLIRAQEMVRRLGADFPITW 119

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
             +QE   E   +     +  +           A   +L  +  +          H   D
Sbjct: 120 ELVQEHAAENATIGRPHLADALVTIGAVPDRSAAFTEILAGRSKYY-------VPHFAPD 172

Query: 194 RYRESQVVQLAYTHELPLVATNNSLF 219
                 +++ A    +P+ A   +  
Sbjct: 173 PAEAVALIRAA--GGVPVFAHPRARM 196


>gi|260588431|ref|ZP_05854344.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM
           20583]
 gi|260541305|gb|EEX21874.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM
           20583]
          Length = 428

 Score = 55.4 bits (132), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query: 809 ARQFNIQIMPPSVNTPCVDFKV--GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            ++ NI I  P +N     F     +NRI Y+L AI G+G    R ++E   ++P+  ++
Sbjct: 1   MQKRNIPIALPYINQANFGFYPDEENNRIIYALKAINGIGDDVVRILLE---NRPYRDMQ 57

Query: 867 DFCSRVDSKKLNR-RVLESLVFAGALDCFG-YSRMQLL 902
           DF  R+   KL +   +  L+ AG  D      R++L+
Sbjct: 58  DFYERMIKTKLVKNSQMMQLIKAGVFDEISNTDRIELM 95


>gi|331001830|ref|ZP_08325352.1| hypothetical protein HMPREF0491_00214 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330412804|gb|EGG92187.1| hypothetical protein HMPREF0491_00214 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 290

 Score = 55.4 bits (132), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          + K   ++ L  HS+ S  +G  S  ++           IA+TD + +    E  +K   
Sbjct: 1  MNKISGYIDLHTHSTSS--DGTYSPTDVAVLAKQASLSLIALTDHDTMAGVDECFKKGLK 58

Query: 65 AGIQPIIGCQLDIDMQDN 82
           G+  I G ++    ++ 
Sbjct: 59 LGLFVIPGVEMSCVYEEK 76


>gi|167844170|ref|ZP_02469678.1| error-prone DNA polymerase [Burkholderia pseudomallei B7210]
          Length = 95

 Score = 55.4 bits (132), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 2/41 (4%)

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             G   R   +V ++Q   T KG  + +VT  +         
Sbjct: 1    NGRLARACGLVTARQMPGTAKG--VLFVTLEDETGCVNVIV 39


>gi|293611115|ref|ZP_06693414.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826767|gb|EFF85133.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 283

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++          +A+TD + +         A    +  I G 
Sbjct: 6  LHTHSNIS--DGTLSPELLVQAAIDVNLHTLALTDHDTMDGLQRAKIAAQGHDLNIISGA 63


>gi|15615934|ref|NP_244238.1| hypothetical protein BH3372 [Bacillus halodurans C-125]
 gi|10175995|dbj|BAB07091.1| BH3372 [Bacillus halodurans C-125]
          Length = 266

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 19/177 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H++ S  +G  S   I+ K        IAITD + L    E        GI  I   
Sbjct: 14  LHIHTTAS--DGEYSPTAIVKKAKEIGLRTIAITDHDTLDGIEEAVIAGKRHGINVIPA- 70

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLV------STAEGYQRLIELVSRMYLLDQGKQ 127
              I++    K TN     +    S  L           EG  R ++++ +   +     
Sbjct: 71  ---IELTTKYKGTNVDILGYNVKASEKLQAILVQLKKHREG--RAMQIIEKFNDIGF--- 122

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              I L  +++   +G+I     +   + + +  +   V ++ L   K    D++ +
Sbjct: 123 --TITLDEVKQFSEDGVIARPHIAKAIVKKGYVLDYQTVFDEYLADGKPCAIDKMIL 177


>gi|148653782|ref|YP_001280875.1| phosphotransferase domain-containing protein [Psychrobacter sp.
          PRwf-1]
 gi|148572866|gb|ABQ94925.1| PHP C-terminal domain protein [Psychrobacter sp. PRwf-1]
          Length = 309

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G+ S + +L K  A      A+TD + L    E    A A GI  I G 
Sbjct: 21 LHSHSTCS--DGSNSPSELLHKAHAAHIDIFALTDHDTLAGIPEAKATAQALGITLINGV 78

Query: 74 QLDI 77
          ++  
Sbjct: 79 EISC 82


>gi|258591353|emb|CBE67652.1| PHP C-terminal domain protein [NC10 bacterium 'Dutch sediment']
          Length = 290

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L +H+  S  +GAL    ++          +A+TD +++    E  + A    I+
Sbjct: 7  LHLHTKAS--DGALQPAELVKAADRIGIRVMAVTDHDSVNGIAEAQEAASDLAIE 59


>gi|332178528|gb|AEE14217.1| PHP domain protein [Thermodesulfobium narugense DSM 14796]
          Length = 244

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAAD-QQPAIAITDTNNLFSALEFSQKACAAGI 67
          L +HSS+S  +G  S   I+  +A       IAITD +N+  +L+  +     GI
Sbjct: 10 LHIHSSFS--DGIASPEEIVKYVANYTDLKIIAITDHDNIKGSLKAVELGEKYGI 62


>gi|239918017|ref|YP_002957575.1| predicted metal-dependent phosphoesterase, PHP family [Micrococcus
           luteus NCTC 2665]
 gi|239839224|gb|ACS31021.1| predicted metal-dependent phosphoesterase, PHP family [Micrococcus
           luteus NCTC 2665]
          Length = 286

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 65/206 (31%), Gaps = 15/206 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G     +++   A      +A+TD +      E +  A   G+  + G 
Sbjct: 9   LHTHSTES--DGTEPPADVVRAAARVGLDGLALTDHDTTAGWAEAAHAARETGLTLVPGM 66

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++     D + +        P  P+++       G  R   L+    ++ +      I  
Sbjct: 67  EMSCTSADGVSVHVLSYLHDPEDPALL----REVGLARDARLIRAQEMVRRLGADFPITW 122

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
             +QE   E   +     +  +           A   +L  +  +          H   D
Sbjct: 123 ELVQEHAAENATIGRPHLADALVTIGAVPDRSAAFTEILAGRSKYY-------VPHFAPD 175

Query: 194 RYRESQVVQLAYTHELPLVATNNSLF 219
                 +++ A    +P+ A   +  
Sbjct: 176 PAEAVALIRAA--GGVPVFAHPRARM 199


>gi|50086134|ref|YP_047644.1| phosphoesterase [Acinetobacter sp. ADP1]
 gi|49532110|emb|CAG69822.1| putative phosphoesterase (PHP family) [Acinetobacter sp. ADP1]
          Length = 283

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS + ++D   A     +A+TD + +       Q+A    IQ I G 
Sbjct: 6  LHTHSNIS--DGTLSPSCLVDAAIACGIHTLALTDHDTMDGLETAIQQAQGHDIQIISGA 63


>gi|308050244|ref|YP_003913810.1| PHP domain protein [Ferrimonas balearica DSM 9799]
 gi|307632434|gb|ADN76736.1| PHP domain protein [Ferrimonas balearica DSM 9799]
          Length = 275

 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++ S  +G L+   ++ + A  Q   +AITD + +    + +  A   G++ I G 
Sbjct: 5   LHCHTTAS--DGTLTPTELVTRAALQQVTILAITDHDTVAGLDQAADAAAQKGVRLISGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
                     ++   G    P  P++V
Sbjct: 63  -EISTRWHGFEIHIVGLNFDPQHPAMV 88


>gi|239994451|ref|ZP_04714975.1| PHP domain protein [Alteromonas macleodii ATCC 27126]
          Length = 89

 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
          L  H+ +S  +G L+   ++ +    Q  A+A+TD + +    E  
Sbjct: 5  LHSHTKFS--DGHLTPEELILRAHTMQVDALAVTDHDTVAGLEEAH 48


>gi|21673167|ref|NP_661232.1| hypothetical protein CT0328 [Chlorobium tepidum TLS]
 gi|21646246|gb|AAM71574.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 288

 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G  +   I+ K       AI+ITD + +    +    A   G++ I G 
Sbjct: 18 LHIHTKCS--DGLFTPEEIVHKAIHVGLKAISITDHDTVTGIDQAKPLALELGLELIPGV 75

Query: 74 QLDIDMQ 80
          ++    +
Sbjct: 76 EMSSAYK 82


>gi|325127572|gb|EGC50495.1| PHP domain protein [Neisseria meningitidis N1568]
          Length = 278

 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSTVS--DGMLSPTEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +  +                    LL    +G  RL  L +    L++
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAKVRQG--RLKRLEAIAAKLEK 110


>gi|294669715|ref|ZP_06734781.1| hypothetical protein NEIELOOT_01615 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308281|gb|EFE49524.1| hypothetical protein NEIELOOT_01615 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 197

 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 62/173 (35%), Gaps = 5/173 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +GAL+   ++    A+    +A+TD ++     E   +A   GI+ I G 
Sbjct: 4   LHCHSTVS--DGALAPAEVVRLARANGCTLLALTDHDHTGGLAEARAEAETLGIRFINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++ +  +                P   LL    +G  RL  L +    L++ K       
Sbjct: 62  EISVTWRKRTIHIVGLDFDEHHAPLQNLLAEVRKG--RLKRLEAIAAKLEK-KGIFGAYE 118

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             L+      ++  T  +S  +D     N  Q   K L   K       +  L
Sbjct: 119 GALERAANPEMVSRTHIASFLLDNGHVRNKQQAFTKYLGEGKSCSVPHQWAEL 171


>gi|239618499|ref|YP_002941821.1| PHP domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239507330|gb|ACR80817.1| PHP domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 279

 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 12/167 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VHS+ S  +G  +   +L++ A      +AITD + +    E         +  I G 
Sbjct: 5   LHVHSTAS--DGTCTPEELLEEAADKGIEVLAITDHDTINGVKELPNVFKD--VIVIKGV 60

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL-VSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
           ++  +    L +   G  P        L  +      + LI +               I 
Sbjct: 61  EISAEFNGVLHILGYGVDPNNERIDQTLTELQDYRLKRNLIMI------EKMKSHGFDIT 114

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
           L  L+E+G + LI     +S  I + +  +S   A ++ L    LF 
Sbjct: 115 LEELKEVGNDDLIGRPHFASLMIKKGYV-DSYDEAFEKYLKKGALFY 160


>gi|269119198|ref|YP_003307375.1| PHP domain protein [Sebaldella termitidis ATCC 33386]
 gi|268613076|gb|ACZ07444.1| PHP domain protein [Sebaldella termitidis ATCC 33386]
          Length = 298

 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS YS  +G    + ++          IA+ D N++    E   K    G++ I   
Sbjct: 8  LHMHSGYSD-DGEFKPSVLVQMCKDAGLKYIAVADHNSVKGVEEAVNKGEELGVKVITAI 66

Query: 74 QLDIDMQ 80
          ++D   +
Sbjct: 67 EIDCTYE 73


>gi|93006797|ref|YP_581234.1| PHP-like [Psychrobacter cryohalolentis K5]
 gi|92394475|gb|ABE75750.1| PHP-like [Psychrobacter cryohalolentis K5]
          Length = 315

 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++ +        +A+TD + L    E    A A  IQ I G 
Sbjct: 27 LHCHSTCS--DGTYAPAEVVQRAHTAGINVLALTDHDTLLGIDEARAAAEACNIQLINGV 84

Query: 74 QLDIDM 79
          ++  + 
Sbjct: 85 EISCEH 90


>gi|148656462|ref|YP_001276667.1| phosphotransferase domain-containing protein [Roseiflexus sp. RS-1]
 gi|148568572|gb|ABQ90717.1| PHP C-terminal domain protein [Roseiflexus sp. RS-1]
          Length = 241

 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            VH+ YS  +G  S+  +L+         +AITD + +  ALE  + A    ++ I+G +
Sbjct: 10  HVHTRYS--DGHSSVAQVLEYADHIGLHVVAITDHDTIDGALEARRMARGFNVEVIVGEE 67

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           +       L +  +   P        +  +  +G
Sbjct: 68  VSTADGHLLVLFLERALPPGRPAPETIAAAHEQG 101


>gi|325133599|gb|EGC56260.1| PHP domain protein [Neisseria meningitidis M13399]
          Length = 278

 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 4/113 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSTVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ +  +                    LL    +G  RL  L +    L++  
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQG--RLKRLEAIAAKLEKRG 112


>gi|325129565|gb|EGC52389.1| PHP domain protein [Neisseria meningitidis OX99.30304]
 gi|325135609|gb|EGC58226.1| PHP domain protein [Neisseria meningitidis M0579]
          Length = 278

 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   I+     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSTVS--DGMLSPAEIVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +  +                    LL    +G  RL  L +    L++
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQG--RLKRLEAIADKLEK 110


>gi|297538006|ref|YP_003673775.1| PHP domain-containing protein [Methylotenera sp. 301]
 gi|297257353|gb|ADI29198.1| PHP domain protein [Methylotenera sp. 301]
          Length = 299

 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 64/176 (36%), Gaps = 10/176 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++ S  +G LS   ++   A      +A+TD ++       +++A   G+  I G 
Sbjct: 7   LHSHTTVS--DGMLSPVELVAYAAKQGVDVLALTDHDDTGGLAVAAEEAKRWGLHFINGV 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC- 132
           ++ +  +         K           L +   G        +R   +  G   V I  
Sbjct: 65  EISVTWKKRTIHIVGLKINPEYPALKAGLAALRAGRH------TRAEGMAAGLDKVGITG 118

Query: 133 -LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            L    +   +G+I     +   ++     ++  V +K L+  K  + +  + +L+
Sbjct: 119 SLEGAYQYVNDGIIGRIHFARFLVENGVSKDNKSVFKKYLVKGKPGYFEHQWASLE 174


>gi|254671588|emb|CBA09253.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
 gi|319409853|emb|CBY90165.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
          Length = 278

 Score = 55.0 bits (131), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 4/113 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSTVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ +  +                    LL    +G  RL  L +    L++  
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQG--RLKRLEAIAAKLEKRG 112


>gi|33152479|ref|NP_873832.1| metal-dependent phosphoesterase [Haemophilus ducreyi 35000HP]
 gi|33148702|gb|AAP96221.1| TrpH-like protein, probable metal-dependent phosphoesterase
          [Haemophilus ducreyi 35000HP]
          Length = 275

 Score = 55.0 bits (131), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L+   ++ +    +   +A+TD + L    E    A +  IQ I G 
Sbjct: 5  LHSHSTAS--DGMLTPTELILRAVEQKVDVLALTDHDTLAGIQEAKIAAESQPIQLISGV 62


>gi|297571786|ref|YP_003697560.1| PHP domain protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296932133|gb|ADH92941.1| PHP domain protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 278

 Score = 55.0 bits (131), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 73/240 (30%), Gaps = 28/240 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++ S  +G  S   ++ K        I +TD + +    E S  A A  I+ + G 
Sbjct: 5   LHTHTTCS--DGTDSPTELMKKACEVGIDVIGLTDHDTVSGWEEASIAARANNIRLVRGM 62

Query: 74  QL---DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           ++      ++ ++               I  +  + EG  R         + ++      
Sbjct: 63  EITATCHGVRVHILGYLFNSEDNKVQDHIRSVRESREGRAR--------AITERLAADFP 114

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGP-IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           +    +      G  +     +   +++    N S+  E+ L T    + ++        
Sbjct: 115 VTFEDVMRQAAPGATLGRPHIADALVEKGILANRSEAFEQVLATSSPYYVEQY------- 167

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLF---LSEEDYEAHDVLMAVAHSTVVSQKDRP 246
              D      VV+  +      V  +           D    ++  A      V  +D P
Sbjct: 168 -APDAR---AVVEFIHAAGGKTVWAHPKAMKRGTVAPDRAYRELAEAGLFGIEVDHRDNP 223


>gi|156937832|ref|YP_001435628.1| phosphotransferase domain-containing protein [Ignicoccus hospitalis
           KIN4/I]
 gi|156566816|gb|ABU82221.1| PHP C-terminal domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 225

 Score = 55.0 bits (131), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 64/228 (28%), Gaps = 61/228 (26%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VH++YS  +G   +  +L+         IAITD N    +L  S+     G+  ++  
Sbjct: 8   LHVHTTYS--DGLDPVEVVLEAALEKGLDVIAITDHNTFKGSLAASKVIKEKGLDLVLV- 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD--------QG 125
                                              Y   +       L+D         G
Sbjct: 65  -----------------------------------YGNEVRASYLGKLMDVLVLCPEYPG 89

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
           +   R  L+        G +         +    F +      + L          ++  
Sbjct: 90  EGWPRDALTLYDWAEKRGCLY--------VPAHPFDSRRYGCGELLYDL------EVHAI 135

Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
              +    R    + ++ A     P +A +++    +    AH VL A
Sbjct: 136 EVWNARAPRSLNEEALRAAELLGKPGIANSDAHEAEQV-ALAHSVLEA 182


>gi|325957827|ref|YP_004289293.1| PHP domain-containing protein [Methanobacterium sp. AL-21]
 gi|325329259|gb|ADZ08321.1| PHP domain protein [Methanobacterium sp. AL-21]
          Length = 216

 Score = 54.6 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +HS+YS  +   S  +I+ +       AIA+ D N +  +L   ++A  
Sbjct: 6  HIHSTYSS-DSTASPRDIIKRAKKIGLDAIAVADHNTIKGSLVTIEEAKD 54


>gi|251796908|ref|YP_003011639.1| PHP domain protein [Paenibacillus sp. JDR-2]
 gi|247544534|gb|ACT01553.1| PHP domain protein [Paenibacillus sp. JDR-2]
          Length = 331

 Score = 54.6 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           L  H+ +S  +G  SL  +     A     +A+TD N +    +        G+  I G
Sbjct: 7  ELHSHTDHS--DGRQSLLELAQGAKALGFDCVALTDHNTMTGLKDREYVERETGLTIISG 64

Query: 73 CQLDIDMQD 81
           +       
Sbjct: 65 MEWTTFYGH 73


>gi|152992587|ref|YP_001358308.1| family X DNA polymerase IV [Sulfurovum sp. NBC37-1]
 gi|151424448|dbj|BAF71951.1| DNA polymerase IV, family X [Sulfurovum sp. NBC37-1]
          Length = 571

 Score = 54.6 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+ YS  +G  S+  +           IAITD 
Sbjct: 342 LHMHTHYS--DGHNSIEEMALAAKEHGYEYIAITDH 375


>gi|325204781|gb|ADZ00235.1| PHP domain protein [Neisseria meningitidis M01-240355]
          Length = 278

 Score = 54.6 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 4/113 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSTVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ +  +                    LL    +G  RL  L +    L++  
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQG--RLKRLEAIAAKLEKRG 112


>gi|325143826|gb|EGC66142.1| PHP domain protein [Neisseria meningitidis M01-240013]
 gi|325206740|gb|ADZ02193.1| PHP domain protein [Neisseria meningitidis M04-240196]
          Length = 278

 Score = 54.6 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 4/113 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSTVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ +  +                    LL    +G  RL  L +    L++  
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQG--RLKRLEAIAAKLEKRG 112


>gi|218459457|ref|ZP_03499548.1| DNA polymerase III alpha subunit protein [Rhizobium etli Kim 5]
          Length = 287

 Score = 54.6 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +    G  +  A +V+ +Q+  + KG  + ++T  +         +P
Sbjct: 137  DGIVARDGQWLMEAGLVLVRQRPGSAKG--VMFITIEDETGIANVVVWP 183


>gi|11498832|ref|NP_070061.1| hypothetical protein AF1233 [Archaeoglobus fulgidus DSM 4304]
 gi|2649349|gb|AAB90011.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 211

 Score = 54.6 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L +HS+YS  +G  S+  I  +       AIAI D 
Sbjct: 4  LHIHSNYS--DGQGSVEEIARRAKERGLKAIAIVDH 37


>gi|116754100|ref|YP_843218.1| phosphotransferase domain-containing protein [Methanosaeta
          thermophila PT]
 gi|116665551|gb|ABK14578.1| PHP C-terminal domain protein [Methanosaeta thermophila PT]
          Length = 216

 Score = 54.6 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          L +HS YS  +G  S+  I+          IA+TD N L  ++   +   +
Sbjct: 5  LHIHSKYS--DGGASVEEIVRVARRKGLGGIAVTDHNTLDGSMAALRICRS 53


>gi|268608563|ref|ZP_06142290.1| putative phophoesterase [Ruminococcus flavefaciens FD-1]
          Length = 278

 Score = 54.6 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+  S  +G+L + +++++ A      ++ITD + + S       A  AGI+ + G 
Sbjct: 5  LHCHTKLS--DGSLGIEDVIEQAARTGIDWLSITDHDTMASFSRADVLAERAGIKVLHGV 62

Query: 74 QLDIDMQDNLKMTN 87
          +L    ++     +
Sbjct: 63 ELSAWDKERNSKVH 76


>gi|260881699|ref|ZP_05405044.2| PHP domain protein [Mitsuokella multacida DSM 20544]
 gi|260848197|gb|EEX68204.1| PHP domain protein [Mitsuokella multacida DSM 20544]
          Length = 270

 Score = 54.6 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 17 HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC--AAGIQPIIGCQ 74
          H++YS  +G L+   ++ K        +AITD + +       +     A GI  I G +
Sbjct: 2  HTTYS--DGKLTPEELVAKAKEAGLSYMAITDHDTVEGISHLYENGLYPARGIHIIPGIE 59

Query: 75 LDIDMQDN 82
                  
Sbjct: 60 FSAHHPTR 67


>gi|326389412|ref|ZP_08210979.1| PHP domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325994417|gb|EGD52842.1| PHP domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 278

 Score = 54.6 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F  L +HS  S  +G  S + ++          I++TD + +    E    +    I+ I
Sbjct: 2  FADLHMHSKAS--DGTNSPSEVVRLAKEHGLSCISLTDHDTIDGLEEAIGASSRYEIEVI 59

Query: 71 IGCQLDIDMQD 81
           G + +   QD
Sbjct: 60 PGIEFNCYYQD 70


>gi|159036340|ref|YP_001535593.1| phosphotransferase domain-containing protein [Salinispora arenicola
           CNS-205]
 gi|157915175|gb|ABV96602.1| PHP domain protein [Salinispora arenicola CNS-205]
          Length = 284

 Score = 54.6 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 70/205 (34%), Gaps = 24/205 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQKACAAGIQPI 70
           L  HS+ S  +G L+   ++    A     +AITD +       A+     A  AG++ +
Sbjct: 7   LHTHSTAS--DGTLTPAELVHAAGAAGLDVVAITDHDTTAGWEPAVR----ALPAGLRLV 60

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQSV 129
            G +L                       ++  +   +      EL    +    +G+++V
Sbjct: 61  RGAELSC---------RWYGEDPAVPLHLLAYLFDPDAPDLAAELSRVRHARTVRGERTV 111

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           R+  +   E+      +L G   G + R     +   A     T +    D  ++  +  
Sbjct: 112 RLLQADGIEVSWSE--ILAGARGGTVGRPHIAQALIRAGLVATTREAFGPD--WLGERYR 167

Query: 190 RGYDRYRESQVVQLAYTH-ELPLVA 213
              D     Q V+L      +P+ A
Sbjct: 168 LPKDDIEVFQAVRLVRAAGGVPVFA 192


>gi|110667649|ref|YP_657460.1| histidinol phosphatase [Haloquadratum walsbyi DSM 16790]
 gi|109625396|emb|CAJ51820.1| probable histidinol phosphatase [Haloquadratum walsbyi DSM 16790]
          Length = 227

 Score = 54.6 bits (130), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HSS S  +G   +  +L++ AA    A+A+TD + + ++L  ++ A    +  I 
Sbjct: 4  VELHAHSSLSY-DGHDPVELLLEQAAAIGLDALAVTDHDEIDASLRAAELASEYDLIGIP 62

Query: 72 GCQLDIDMQD 81
            ++      
Sbjct: 63 AMEVSSAAGH 72


>gi|309810407|ref|ZP_07704241.1| PHP domain protein [Dermacoccus sp. Ellin185]
 gi|308435647|gb|EFP59445.1| PHP domain protein [Dermacoccus sp. Ellin185]
          Length = 282

 Score = 54.6 bits (130), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 76/247 (30%), Gaps = 22/247 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  S  +++ + +      +A+TD +      + +  A   GI  + G 
Sbjct: 5   LHTHSNRS--DGTTSPADVVAEASEAGLDVVALTDHDTTRGWDDAADAARRVGIDVVRGI 62

Query: 74  QL-DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQGKQSVRI 131
           ++       ++ +      P   +   +     +         V+R   ++++  + V I
Sbjct: 63  EISCRHRGISIHLLAYLPAPEGELFDEMERARESR--------VTRAERMVERLGRDVPI 114

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +         +     +  +           A + LL+    +          H  
Sbjct: 115 TYEQVLAQAGPDATIGRPHIADALVANGVVPDRSTAFEHLLSNSGPYH-------VGHYA 167

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            D  R   +V+ A    +      +      +D    +++ A     +  +      TP+
Sbjct: 168 IDPVRAVTLVRAAGGVPVMAHPFADVRGRVVDDAVIEEMIDA---GLLGLEAHHRDHTPE 224

Query: 252 HYLKNRS 258
                R 
Sbjct: 225 QVRHARD 231


>gi|307267396|ref|ZP_07548888.1| PHP domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917581|gb|EFN47863.1| PHP domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 278

 Score = 54.6 bits (130), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F  L +HS  S  +G  S + ++          I++TD + +    E    +    I+ I
Sbjct: 2  FADLHMHSKAS--DGTNSPSEVVRLAKEHGLSCISLTDHDTIDGLEEAIGASSRYEIEVI 59

Query: 71 IGCQLDIDMQD 81
           G + +   QD
Sbjct: 60 PGIEFNCYYQD 70


>gi|167855669|ref|ZP_02478426.1| TrpH-like protein [Haemophilus parasuis 29755]
 gi|167853187|gb|EDS24444.1| TrpH-like protein [Haemophilus parasuis 29755]
          Length = 273

 Score = 54.6 bits (130), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L+   ++ +        +A+TD + +    E    A    +  I G 
Sbjct: 5   LHSHSTAS--DGVLTPTELVKRAVEQNVTMLALTDHDTVAGITEAKMFAQNQPLTFISGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV----SRMYLLDQGKQSV 129
           ++ +  +                  + LL S  +  Q   EL+    S+  + +  + + 
Sbjct: 63  EISVLWEGKSLHLTALNIDETHPAIVNLLASQKQLRQERAELIGEKLSKAGIPNAYQGAK 122

Query: 130 RI 131
            I
Sbjct: 123 AI 124


>gi|167749579|ref|ZP_02421706.1| hypothetical protein EUBSIR_00537 [Eubacterium siraeum DSM 15702]
 gi|167657433|gb|EDS01563.1| hypothetical protein EUBSIR_00537 [Eubacterium siraeum DSM 15702]
          Length = 281

 Score = 54.6 bits (130), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 19/84 (22%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------------FS-----AL 56
          L  H++ S  +G+L L   + +         AITD + L            +      A+
Sbjct: 5  LHCHTTMS--DGSLGLEETIAQAKRYGIDYFAITDHDTLSSSSRAVVLGERYGVNVIPAV 62

Query: 57 EFSQKACAAGIQPIIGCQLDIDMQ 80
          EFS      G +  I C       
Sbjct: 63 EFSTYDSKHGTKAHIICYNPEKPN 86


>gi|322514437|ref|ZP_08067479.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Actinobacillus ureae ATCC 25976]
 gi|322119644|gb|EFX91706.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Actinobacillus ureae ATCC 25976]
          Length = 252

 Score = 54.6 bits (130), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          L  HS+ S  +G LS   ++ +    Q   +A+TD + +    E  Q A    I  I
Sbjct: 5  LHSHSTAS--DGMLSPAELVQRALEQQIEMLALTDHDTVEGIQEAKQAAQGQPISLI 59


>gi|315651456|ref|ZP_07904479.1| PHP domain protein [Eubacterium saburreum DSM 3986]
 gi|315486276|gb|EFU76635.1| PHP domain protein [Eubacterium saburreum DSM 3986]
          Length = 288

 Score = 54.6 bits (130), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 13/136 (9%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           ++ L  HS+ S  +G+ S + +     +    AIA+TD + +    E  +      +  I
Sbjct: 3   YIDLHTHSTAS--DGSFSPSKVAMLAKSADMKAIALTDHDTMAGVEECFKMGLQLDLPVI 60

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G ++        ++   G       P+  L +                 L    ++   
Sbjct: 61  AGVEMSCVYNS-KEIHILGYLLPDNFPAKNLHIKDEV----------LADLEFFARERAD 109

Query: 131 ICLSWLQEIGTEGLIM 146
                +     +G+I+
Sbjct: 110 RNAEIINRFKKDGIII 125


>gi|154149763|ref|YP_001403381.1| phosphotransferase domain-containing protein [Candidatus
          Methanoregula boonei 6A8]
 gi|153998315|gb|ABS54738.1| PHP C-terminal domain protein [Methanoregula boonei 6A8]
          Length = 225

 Score = 54.6 bits (130), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          L VH+++S  +G  S+  IL +  A     IAITD + +  A + 
Sbjct: 6  LHVHTNFS-KDGESSVEEILRQAEAVGLDVIAITDHDCVDGAKKA 49


>gi|73668938|ref|YP_304953.1| hypothetical protein Mbar_A1414 [Methanosarcina barkeri str.
           Fusaro]
 gi|72396100|gb|AAZ70373.1| hypothetical protein Mbar_A1414 [Methanosarcina barkeri str.
           Fusaro]
          Length = 214

 Score = 54.6 bits (130), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 68/209 (32%), Gaps = 49/209 (23%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS YS  +G L    I           IAITD N +   L+  ++      + IIG 
Sbjct: 6   LHLHSKYSS-DGILDPKTITKVAIRRGLNGIAITDHNTIKGGLKA-KEYETKNFKVIIGS 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++  +  + + +    +     +  ++  +    G                         
Sbjct: 64  EIMTNNGEVIGLFLSEEIRSTDLIEVISTIKAQNG------------------------- 98

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                      I++       +  +  + + + A   L+   + F  R            
Sbjct: 99  -----------IVVIPHPFDKMRHSALYPTDEEA--HLIDCIEGFNSRCIF--------- 136

Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSE 222
           +    + V+ A  H LPLVA +++ F +E
Sbjct: 137 QKYNDKAVEYANKHNLPLVAGSDAHFANE 165


>gi|317055173|ref|YP_004103640.1| PHP domain-containing protein [Ruminococcus albus 7]
 gi|315447442|gb|ADU21006.1| PHP domain protein [Ruminococcus albus 7]
          Length = 307

 Score = 54.6 bits (130), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +G+L +  ++ +        +AITD + L S           G+  I   
Sbjct: 5  LHCHTTLS--DGSLGIEEVIAQAKRMGLDFLAITDHDTLSSTSRAQILGERYGVNIIQAV 62

Query: 74 QLDIDMQDNLKMTN 87
          +L    +   +  +
Sbjct: 63 ELSAWDKKRNEKVH 76


>gi|254804361|ref|YP_003082582.1| putative metal-dependent phosphoesterase [Neisseria meningitidis
           alpha14]
 gi|254667903|emb|CBA04043.1| putative metal-dependent phosphoesterase [Neisseria meningitidis
           alpha14]
          Length = 278

 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSTVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +  +                    LL    +G  RL  L +    L++
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQG--RLKRLEAIAAKLEK 110


>gi|261393162|emb|CAX50774.1| conserved hypothetical protein [Neisseria meningitidis 8013]
          Length = 278

 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 4/113 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSTVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGISEARAEADKLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ +  +                    LL    +G  RL  L +    L++  
Sbjct: 62  EISVTWRGRTIHVVGLDFDERDENLQNLLAQVRQG--RLKRLEAIAAKLEKRG 112


>gi|261401660|ref|ZP_05987785.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           lactamica ATCC 23970]
 gi|269208239|gb|EEZ74694.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           lactamica ATCC 23970]
          Length = 278

 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSTVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +  +                    LL    +G  RL  L +    L++
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQG--RLKRLEAIAAKLEK 110


>gi|74312364|ref|YP_310783.1| hypothetical protein SSON_1877 [Shigella sonnei Ss046]
 gi|73855841|gb|AAZ88548.1| putative enzyme [Shigella sonnei Ss046]
          Length = 293

 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 79/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +N  + +   ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEVLVHRAVEMRVGTLAITDHDNTAAIVPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            +RL +   V+R +                         ++  +   W        +I  
Sbjct: 130 ARRLAQGGAVTRGHFARFLVGCGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLAALARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|254673559|emb|CBA09034.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
          Length = 278

 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSTVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +  +                    LL    +G  RL  L +    L++
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQG--RLKRLEAIAAKLEK 110


>gi|308069689|ref|YP_003871294.1| Protein trpH [Paenibacillus polymyxa E681]
 gi|305858968|gb|ADM70756.1| Protein trpH [Paenibacillus polymyxa E681]
          Length = 289

 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+  S  +G     + +          +AITD + +    E  ++    GI  + G 
Sbjct: 12 LHTHTQAS--DGMQPPADNVRWAKEKGLAGVAITDHDTVAGLEEALEEGKRIGITVVPGV 69


>gi|330465619|ref|YP_004403362.1| phosphotransferase domain-containing protein [Verrucosispora maris
           AB-18-032]
 gi|328808590|gb|AEB42762.1| phosphotransferase domain-containing protein [Verrucosispora maris
           AB-18-032]
          Length = 286

 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 70/206 (33%), Gaps = 26/206 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG- 72
           L  HS+ S  +G LS   ++   A      +AITD +         Q     G++ + G 
Sbjct: 7   LHTHSTAS--DGTLSPPQLVRAAAEAGLDVVAITDHDTTAGWEPALQALPG-GLRLVRGA 63

Query: 73  --CQLDIDMQDNLKMTNQGKTPFPTVPSIVL-LVSTAEG-YQRLIELVSRMYLLDQGKQS 128
                   ++ +L +        P  P +V  L        QR   +V+ ++        
Sbjct: 64  ELSCRWNGVEPSLPLHLLAYLFDPDAPELVAELARVRAARLQRGERIVALLWADG----- 118

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I +SW +        +L G   G + R     +   A   + T +    D  ++  + 
Sbjct: 119 --IDVSWPE--------ILAGAGGGTVGRPHIAQALIRAGLVVTTTEAFGPD--WLGERY 166

Query: 189 HRGYDRYRESQVVQLAYTH-ELPLVA 213
               +     Q V+L      +P+ A
Sbjct: 167 RLPKEDIDVFQAVRLIRAAGGVPVFA 192


>gi|309378414|emb|CBX22967.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 278

 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSTVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +  +                    LL    +G  RL  L +    L++
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQG--RLKRLEAIAAKLEK 110


>gi|261378280|ref|ZP_05982853.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           cinerea ATCC 14685]
 gi|269145371|gb|EEZ71789.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           cinerea ATCC 14685]
          Length = 278

 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSTVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +  +                    LL    +G  RL  L +    L++
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQG--RLKRLEAIAAKLEK 110


>gi|171742435|ref|ZP_02918242.1| hypothetical protein BIFDEN_01546 [Bifidobacterium dentium ATCC
           27678]
 gi|171278049|gb|EDT45710.1| hypothetical protein BIFDEN_01546 [Bifidobacterium dentium ATCC
           27678]
          Length = 311

 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 36/101 (35%), Gaps = 4/101 (3%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+ +S  +G  +   +L++  +     +AITD +      +  + A  A + P++   
Sbjct: 17  HCHTVFS--DGTETPRTLLEQAKSRGLQGVAITDHDTTAGWSDAQRAATWAEL-PLLRGT 73

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGYQRLIE 114
                 + + +        P    I  +  +T     R  +
Sbjct: 74  EITADDNRISVHMLAFQYDPDNAQIREMFANTRAARLRRTK 114


>gi|169350513|ref|ZP_02867451.1| hypothetical protein CLOSPI_01281 [Clostridium spiroforme DSM 1552]
 gi|169292833|gb|EDS74966.1| hypothetical protein CLOSPI_01281 [Clostridium spiroforme DSM 1552]
          Length = 297

 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 19/188 (10%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +EK   ++ L +HS YS  +G      +++K        +AI D N++ +  E  + A  
Sbjct: 2   MEK---YIDLHMHSKYSD-DGEFKPAELVEKCHKKNIKIMAIADHNSVKAIEESKKVANK 57

Query: 65  AGIQPIIGCQLDIDMQ--DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
             I  I   ++D   +  D   +            S+   +   E  +   E +     L
Sbjct: 58  LNITYIPAIEIDCTYKGIDLHVLGYGIDYHHEDFESLEKNILNQE-LKNSKEKIELTNNL 116

Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG--D 180
                   +    L+++   G  + TG   G I      +   +    L  ++K     D
Sbjct: 117 GF-----DVDKEALKKLSASG--VYTGEMFGEI---LLNDQRYLDHPLLKPYRKDGNRSD 166

Query: 181 RLYVNLQR 188
             YVN   
Sbjct: 167 NPYVNFYW 174


>gi|239627729|ref|ZP_04670760.1| PHP domain-containing protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239517875|gb|EEQ57741.1| PHP domain-containing protein [Clostridiales bacterium 1_7_47FAA]
          Length = 301

 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS YS  +G  +   ++ K +      +AI D N++ +      +A  AGI  I   
Sbjct: 8  LHMHSYYSD-DGEFTPEELVRKCSDSGIKVMAIADHNSVRANARGELEAAKAGITYIPAI 66

Query: 74 QLDIDMQ 80
          ++D   +
Sbjct: 67 EIDCTFR 73


>gi|78485575|ref|YP_391500.1| PHP-like [Thiomicrospira crunogena XCL-2]
 gi|78363861|gb|ABB41826.1| conserved hypothetical protein with PHP domain [Thiomicrospira
          crunogena XCL-2]
          Length = 281

 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V    H+  S+ +G+L+   ++D         +AITD +           A    ++ I 
Sbjct: 3  VDFHCHT--SISDGSLTPKALVDLAKEKGITTLAITDHDTTHGYELIKDYAKEQDLELIA 60

Query: 72 GCQLDIDMQDN 82
            ++    + +
Sbjct: 61 ASEISCQWKGH 71


>gi|317492215|ref|ZP_07950644.1| PHP domain-containing protein [Enterobacteriaceae bacterium
          9_2_54FAA]
 gi|316919554|gb|EFV40884.1| PHP domain-containing protein [Enterobacteriaceae bacterium
          9_2_54FAA]
          Length = 294

 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          L  H++ S  +G LS   ++ +        +AITD +         Q 
Sbjct: 24 LHSHTTAS--DGLLSPAELVARAVEMGVTTLAITDHDTTVGLPAARQA 69


>gi|323143035|ref|ZP_08077741.1| PHP domain protein [Succinatimonas hippei YIT 12066]
 gi|322417229|gb|EFY07857.1| PHP domain protein [Succinatimonas hippei YIT 12066]
          Length = 295

 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS YS  +G  S  +++ +        +AITD N + +  E  + A    I  I G 
Sbjct: 4  LHIHSLYS-NDGEYSPTDLVRQCVKSGINVMAITDHNTVAATGEAKKSALEHNIDYIPGI 62

Query: 74 QLDIDMQD 81
          ++D   ++
Sbjct: 63 EIDCTFKN 70


>gi|319790038|ref|YP_004151671.1| PHP domain protein [Thermovibrio ammonificans HB-1]
 gi|317114540|gb|ADU97030.1| PHP domain protein [Thermovibrio ammonificans HB-1]
          Length = 575

 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA ++ + + +        IAI+D 
Sbjct: 339 LHLHSTWS--DGASTIEDYVKRALEMGYSYIAISDH 372


>gi|306822345|ref|ZP_07455724.1| PHP family metal-dependent phosphoesterase [Bifidobacterium dentium
           ATCC 27679]
 gi|309802144|ref|ZP_07696253.1| PHP domain protein [Bifidobacterium dentium JCVIHMP022]
 gi|304554343|gb|EFM42251.1| PHP family metal-dependent phosphoesterase [Bifidobacterium dentium
           ATCC 27679]
 gi|308221224|gb|EFO77527.1| PHP domain protein [Bifidobacterium dentium JCVIHMP022]
          Length = 311

 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 36/101 (35%), Gaps = 4/101 (3%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+ +S  +G  +   +L++  +     +AITD +      +  + A  A + P++   
Sbjct: 17  HCHTVFS--DGTETPRTLLEQAKSRGLQGVAITDHDTTAGWSDAQRAATWAEL-PLLRGT 73

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGYQRLIE 114
                 + + +        P    I  +  +T     R  +
Sbjct: 74  EITADDNRISVHMLAFQYDPDNAQIREMFANTRAARLRRTK 114


>gi|323141756|ref|ZP_08076626.1| PHP domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322413745|gb|EFY04594.1| PHP domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 274

 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 76/253 (30%), Gaps = 53/253 (20%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ--- 68
           V L +HS++S  +G  +   ++D+  A     IAITD ++     E  + A   G +   
Sbjct: 6   VDLHLHSTFS--DGRYTPTMLVDEAVAKGIGVIAITDHDSWNGMAEACEAAKRYGGRIRV 63

Query: 69  -------------PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE--GYQRLI 113
                         +      + M          +  +     +  ++   E  GY   +
Sbjct: 64  LTGVELGTQYEDDAVHILGYHVSMDCEALHNKMDEMRYAREHRLYAMLEKLEKLGYHVEV 123

Query: 114 E-----------------LVSRMYLLD---------QGKQSVRICLSWLQEIGTEGLIML 147
           E                 LV++ Y                   +    L       LI  
Sbjct: 124 EACDPKNRAVGRPHVAKALVAKGYFATVQEVFDALLHRGGPAYVPQPKLSPHEAVALIHE 183

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
            GG       A   + S++ +K L   + L  +        H   D   ++  + LA  H
Sbjct: 184 AGGI------AVLAHPSELVDKTLPE-RLLAAEPFDGIEVWHPSADARAQAHWLALAKEH 236

Query: 208 ELPLVATNNSLFL 220
            L +   ++   +
Sbjct: 237 GLLVSGGSDFHGI 249


>gi|239906357|ref|YP_002953098.1| PHP domain protein [Desulfovibrio magneticus RS-1]
 gi|239796223|dbj|BAH75212.1| PHP domain protein [Desulfovibrio magneticus RS-1]
          Length = 221

 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+++S  +G L    ++ +       A+A+TD 
Sbjct: 4  LHTHTTFS--DGVLIPAELVRRAVKAGYKAVALTDH 37


>gi|320529390|ref|ZP_08030478.1| PHP domain protein [Selenomonas artemidis F0399]
 gi|320138356|gb|EFW30250.1| PHP domain protein [Selenomonas artemidis F0399]
          Length = 277

 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC---AAGIQPI 70
          L +H+++S  +G  +   I++         I+ITD +++    E  +       + ++ I
Sbjct: 5  LHIHTTFS--DGRDTPEEIVEAAKTAGLRYISITDHDSVEGVTELYESGRCPAGSQLRII 62

Query: 71 IGCQLDIDMQDN 82
           G     D  + 
Sbjct: 63 PGVGFSADYPER 74


>gi|113969805|ref|YP_733598.1| phosphotransferase domain-containing protein [Shewanella sp.
          MR-4]
 gi|113884489|gb|ABI38541.1| PHP C-terminal domain protein [Shewanella sp. MR-4]
          Length = 286

 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G LS + ++ +         AITD + +          +A A  ++ I 
Sbjct: 10 LHSHTTAS--DGHLSPSELVARALEKGVQLFAITDHDTVAGLSEARAFNQAQAEPLKLIS 67

Query: 72 GCQLDIDMQD 81
          G ++      
Sbjct: 68 GVEISTRWNS 77


>gi|148244944|ref|YP_001219638.1| hypothetical protein COSY_0808 [Candidatus Vesicomyosocius
          okutanii HA]
 gi|146326771|dbj|BAF61914.1| conserved hypothetical protein [Candidatus Vesicomyosocius
          okutanii HA]
          Length = 276

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L  HS YS  +G LS   ++          +A+TD + +    E S +A    +Q + 
Sbjct: 5  LHNHSYYS--DGILSPTEVVRLANKQNCDMVALTDHDTIDGLAEASYEANKLNLQFVF 60


>gi|315501748|ref|YP_004080635.1| php domain protein [Micromonospora sp. L5]
 gi|315408367|gb|ADU06484.1| PHP domain protein [Micromonospora sp. L5]
          Length = 288

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 7  KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
            P+ + L  HS+ S  +G L+   ++   A      +A+TD +    
Sbjct: 2  SVPARIDLHTHSTAS--DGTLTPAELVRAAAEAGLDVVALTDHDTTAG 47


>gi|126180240|ref|YP_001048205.1| phosphotransferase domain-containing protein [Methanoculleus
          marisnigri JR1]
 gi|125863034|gb|ABN58223.1| PHP C-terminal domain protein [Methanoculleus marisnigri JR1]
          Length = 221

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL 56
          L VH+ +S  +G  S+  IL +  A    AIAITD + +  AL
Sbjct: 6  LHVHTRHS-KDGESSVEEILRRAEAVGLDAIAITDHDTVEGAL 47


>gi|325679052|ref|ZP_08158646.1| PHP domain protein [Ruminococcus albus 8]
 gi|324109176|gb|EGC03398.1| PHP domain protein [Ruminococcus albus 8]
          Length = 296

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +G++ +  ++ +        +AITD + L S+          G++ I   
Sbjct: 5  LHCHTTLS--DGSMGIEEVIAQAKRVGLDFLAITDHDTLSSSSRAQILGERYGVKIIQAV 62


>gi|297619717|ref|YP_003707822.1| PHP domain protein [Methanococcus voltae A3]
 gi|297378694|gb|ADI36849.1| PHP domain protein [Methanococcus voltae A3]
          Length = 298

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 9/86 (10%)

Query: 5  LEKSPSFVHLQVHSSYS---------LLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          +E   S   L  HS YS           +       I+   A      +A+TD N +   
Sbjct: 1  MEDYNSLADLHTHSKYSGLMRYMGLKFPDSVEEPEKIVRCAAKRGLSVVAVTDHNTIQGG 60

Query: 56 LEFSQKACAAGIQPIIGCQLDIDMQD 81
          L+  + A    +  + G ++  +  +
Sbjct: 61 LKAKEFAKKYDVDVVAGSEVMTNDGE 86


>gi|288553661|ref|YP_003425596.1| hypothetical protein BpOF4_03190 [Bacillus pseudofirmus OF4]
 gi|288544821|gb|ADC48704.1| hypothetical protein BpOF4_03190 [Bacillus pseudofirmus OF4]
          Length = 571

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 9/55 (16%)

Query: 2   TQYLEKSPSFV-----H--LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +Y E    +V     H  L +H+++S  +GA S+  ++    A     IAITD 
Sbjct: 319 VEYFESEKEYVDLEHIHGDLHMHTTWS--DGANSIQEMVKAAQARGYDYIAITDH 371


>gi|302865202|ref|YP_003833839.1| PHP domain-containing protein [Micromonospora aurantiaca ATCC
          27029]
 gi|302568061|gb|ADL44263.1| PHP domain protein [Micromonospora aurantiaca ATCC 27029]
          Length = 288

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 7  KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
            P+ + L  HS+ S  +G L+   ++   A      +A+TD +    
Sbjct: 2  SVPARIDLHTHSTAS--DGTLTPAELVRAAAEAGLDVVALTDHDTTAG 47


>gi|257453670|ref|ZP_05618958.1| PHP domain protein [Enhydrobacter aerosaccus SK60]
 gi|257448948|gb|EEV23903.1| PHP domain protein [Enhydrobacter aerosaccus SK60]
          Length = 307

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 5  LEKSPSFVHL----QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          L  SP +  L      HS+ S  +G  S + ++ K        ++++D + +   LE  Q
Sbjct: 9  LSSSPIYTQLPIDMHCHSTRS--DGTFSPSEVVQKAHDKGVKVLSLSDHDTVLGILEARQ 66

Query: 61 KACAAGIQPIIGCQLDIDMQ 80
           A + G+  I G ++    +
Sbjct: 67 TAESLGMTLIHGVEISCRHR 86


>gi|330830521|ref|YP_004393473.1| metal-dependent phosphoesterase, PHP family [Aeromonas veronii
          B565]
 gi|328805657|gb|AEB50856.1| Metal-dependent phosphoesterase, PHP family [Aeromonas veronii
          B565]
          Length = 293

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G LS   ++ + A  Q   +A+TD + L     +  + +A    ++ + 
Sbjct: 5  LHCHTTAS--DGVLSPAELVRRAAEKQVEVLAVTDHDTLAGLDEVRRTIEAEQLPLRLVS 62

Query: 72 GCQLDIDMQDN 82
          G ++    + +
Sbjct: 63 GVEISTGWEHH 73


>gi|71066252|ref|YP_264979.1| PHP family metal-dependent phosphoesterase [Psychrobacter arcticus
           273-4]
 gi|71039237|gb|AAZ19545.1| possible metal-dependent phosphoesterases (PHP family)
           [Psychrobacter arcticus 273-4]
          Length = 293

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 68/209 (32%), Gaps = 8/209 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  +   ++ +        +A+TD + L    E    A A  IQ I G 
Sbjct: 5   LHCHSTCS--DGTYAPAEVVQRAHTAGINVLALTDHDTLLGIDEARAAADACNIQLINGV 62

Query: 74  QLDIDM---QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           ++  +        K  +  K                   Q+L E  SR     +  + + 
Sbjct: 63  EISCEHTLSGGYGKNKSTNKIIHVLGLDFTDREKMHATLQQLQE--SRATRGQRITEKLS 120

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
             L    +   + ++   GG+   + RA            + T +K F   L  N   + 
Sbjct: 121 TLLGIDYDELWQAVLAKAGGNPQAVGRAHI-GQVLFERGEVKTVQKAFDKYLADNKAAYV 179

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLF 219
             +     + ++L        V  + + +
Sbjct: 180 AIEALTMQRGIELIQECGGKAVLAHPTRY 208


>gi|254786473|ref|YP_003073902.1| PHP domain-containing protein [Teredinibacter turnerae T7901]
 gi|237686709|gb|ACR13973.1| PHP domain protein [Teredinibacter turnerae T7901]
          Length = 275

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L  HSS+S  +G LS   ++ +  + Q   +A+TD + +      +++A   GI  I 
Sbjct: 6  LHSHSSHS--DGVLSPVELVVRAKSKQVDVLALTDHDTVSGLEAAAKQATIEGIDLIP 61


>gi|325131472|gb|EGC54179.1| PHP domain protein [Neisseria meningitidis M6190]
 gi|325137579|gb|EGC60160.1| PHP domain protein [Neisseria meningitidis ES14902]
          Length = 278

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 4/113 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSIVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ +  +                    LL    +G  RL  L +    L++  
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQG--RLKRLEAIAAKLEKRG 112


>gi|262377392|ref|ZP_06070615.1| phosphoesterase [Acinetobacter lwoffii SH145]
 gi|262307622|gb|EEY88762.1| phosphoesterase [Acinetobacter lwoffii SH145]
          Length = 283

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +G  S   +++         +A+TD + +       + A    I+ I 
Sbjct: 4  VDLHTHSNIS--DGTFSPQQLVEAAVEKLVHTLALTDHDTMDGLALAEEAAKNHEIKIIS 61

Query: 72 GCQLDIDMQDNLKMTNQG 89
          G ++           N G
Sbjct: 62 GVEISSQWSRPATKKNYG 79


>gi|73670707|ref|YP_306722.1| hypothetical protein Mbar_A3261 [Methanosarcina barkeri str.
          Fusaro]
 gi|72397869|gb|AAZ72142.1| conserved hypothetical protein [Methanosarcina barkeri str.
          Fusaro]
          Length = 215

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNLFSALEFSQKAC 63
          L  H+ +S  +G L  + ++ +       AIA+TD     NL   +E  QKA 
Sbjct: 4  LHTHTIFS--DGELIPSELVRRAVIHGYKAIALTDHADYTNLEQLIEAGQKAK 54


>gi|145593293|ref|YP_001157590.1| phosphotransferase domain-containing protein [Salinispora tropica
          CNB-440]
 gi|145302630|gb|ABP53212.1| PHP C-terminal domain protein [Salinispora tropica CNB-440]
          Length = 284

 Score = 53.8 bits (128), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQKACAAGIQPI 70
          L  HS+ S  +G L+   ++   AA     +AITD +       A+     A  AG++ +
Sbjct: 7  LHTHSTAS--DGTLTPGELVHAAAAAGLDVVAITDHDTTAGWEPAVR----ALPAGLRLV 60

Query: 71 IGCQLDIDMQ 80
           G +L     
Sbjct: 61 RGAELSCRWD 70


>gi|269926667|ref|YP_003323290.1| PHP domain protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269790327|gb|ACZ42468.1| PHP domain protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 287

 Score = 53.8 bits (128), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G      ++          IAITD + +    E        G++ I G 
Sbjct: 11 LHMHTDRS--DGRYPPRELVQLARDVGLKTIAITDHDTVAGVDEAVAAGEELGLEVIPGI 68

Query: 74 QLDIDMQ 80
          +L   ++
Sbjct: 69 ELSTTVE 75


>gi|311898239|dbj|BAJ30647.1| hypothetical protein KSE_48690 [Kitasatospora setae KM-6054]
          Length = 282

 Score = 53.8 bits (128), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  S   ++    A     +A+TD + +    E +      G+  + G 
Sbjct: 5  LHAHSNAS--DGTDSPAELVANAVAAGLDVVALTDHDTVSGYGEAAAAVAGTGLVLVPGA 62

Query: 74 QLDI 77
          +L  
Sbjct: 63 ELSC 66


>gi|121634259|ref|YP_974504.1| hypothetical protein NMC0394 [Neisseria meningitidis FAM18]
 gi|120865965|emb|CAM09702.1| hypothetical protein NMC0394 [Neisseria meningitidis FAM18]
          Length = 278

 Score = 53.8 bits (128), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 4/113 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSIVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ +  +                    LL    +G  RL  L +    L++  
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQG--RLKRLEAIAAKLEKRG 112


>gi|291514934|emb|CBK64144.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Alistipes shahii WAL 8301]
          Length = 300

 Score = 53.8 bits (128), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS YS  +G L +  I+   AA    A ++TD N++    E ++ A   GI  + G 
Sbjct: 6  LHIHSGYSS-DGELPVAAIVGLCAARGLDAFSLTDHNSVRGVGEAARLARERGIGFVPGI 64

Query: 74 QLDIDMQ 80
          ++D + +
Sbjct: 65 EIDCNYR 71


>gi|119715701|ref|YP_922666.1| phosphotransferase domain-containing protein [Nocardioides sp.
           JS614]
 gi|119536362|gb|ABL80979.1| PHP C-terminal domain protein [Nocardioides sp. JS614]
          Length = 296

 Score = 53.8 bits (128), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 82/251 (32%), Gaps = 40/251 (15%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +G  +   ++   AA     +AITD +      E ++ A AAG+  + G 
Sbjct: 5   LHTHSRAS--DGTDTPTELVRAAAATGLDVVAITDHDTAAGWAEATRAAEAAGVDVVPGM 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++  + +    +   G  P PT P +V         + L    SR+ +L +  +S+ I +
Sbjct: 63  EISTEHRGR-SVHLLGYLPDPTYPPLV-----EALDRVLDGRESRVPVLIERLRSLGIDI 116

Query: 134 -SWLQEIGTEGLIMLTGGSSGP--IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-- 188
            S      + G             +      +  +     L   K    DR  V L    
Sbjct: 117 TSDDVRRASYGTAATGRPHVADALVAIGAVADRDEAFATYLGWGKPAHIDRYAVPLVDAL 176

Query: 189 ----------------------HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
                                   G +R  E  +  L     L  +  +      + D  
Sbjct: 177 RLIAEAGGVSVIAHPWGRGGLALGGSERADEEALSGL-QELGLAGIEVD----HQDHDAR 231

Query: 227 AHDVLMAVAHS 237
           A D L A+A +
Sbjct: 232 ARDRLRAIARN 242


>gi|313669040|ref|YP_004049324.1| hypothetical protein NLA_17620 [Neisseria lactamica ST-640]
 gi|313006502|emb|CBN87966.1| conserved hypothetical protein [Neisseria lactamica 020-06]
          Length = 278

 Score = 53.8 bits (128), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSTVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +  +                    LL    +G  RL  L +    L++
Sbjct: 62  EISVTWRGRTIHVVGLDFDERDENLQNLLAQVRQG--RLKRLEAIAAKLEK 110


>gi|20090153|ref|NP_616228.1| hypothetical protein MA1289 [Methanosarcina acetivorans C2A]
 gi|19915137|gb|AAM04708.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 218

 Score = 53.8 bits (128), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNLFSALEFSQKAC 63
          L  H+ +S  +G L  + ++ +       AIA+TD     NL   L+ ++KA 
Sbjct: 7  LHTHTIFS--DGELLPSELVRRAVIHGYEAIALTDHADYTNLEQLLDAAKKAK 57


>gi|160931700|ref|ZP_02079094.1| hypothetical protein CLOLEP_00532 [Clostridium leptum DSM 753]
 gi|156869345|gb|EDO62717.1| hypothetical protein CLOLEP_00532 [Clostridium leptum DSM 753]
          Length = 276

 Score = 53.8 bits (128), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 25/66 (37%)

Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
          + +G+ S++ ++          IA+TD +    A          GI+ I G ++      
Sbjct: 1  MSDGSASIDEVVLMAKKLGLKTIAVTDHDTFAGATRACVYGRRQGIEVIHGAEISCIDSA 60

Query: 82 NLKMTN 87
            +  +
Sbjct: 61 RGRKVH 66


>gi|313888330|ref|ZP_07822001.1| nucleic acid-binding domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845733|gb|EFR33123.1| nucleic acid-binding domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 407

 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L++HS  S + G  S  +  ++       +I I+DTN++    E  + A   G++ + 
Sbjct: 318 TELRIHSKMSQMSGVTSFTDFANRAKLWGHDSIGISDTNDVQGFPEAMEAAEKTGLKILY 377

Query: 72  GCQLDI 77
           G  ++ 
Sbjct: 378 GTDINF 383


>gi|145589029|ref|YP_001155626.1| phosphotransferase domain-containing protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047435|gb|ABP34062.1| PHP C-terminal domain protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 282

 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 80/258 (31%), Gaps = 53/258 (20%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +G L+   + ++  A+     A+TD + L         A A  I      
Sbjct: 11  LHCHSVVS--DGTLTPEALAERAKANGVNLWALTDHDELGGQERAIDAASALKI------ 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA---EGYQRLIELVSRMYLLDQGKQSVR 130
               D    ++++         +  + +        EG +R           +      +
Sbjct: 63  ----DYLSGVEISVTWMGQTIHIVGLGIDAKHTGIIEGLRR---------TREGRGNRAQ 109

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           +    LQ++G      ++G   G +    +  +  +         +    R  V     +
Sbjct: 110 LMAEQLQKVG------ISGAYEGAL---HYAGNHDL-------ISRTHFARFLVEQGVCK 153

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             ++  ++ +V+     + P    +    L   D  A   + A     V++   R + T 
Sbjct: 154 DTEQVFKNYLVE-----DKPGYVPHQWASLD--DAVAW--IKAAGGVAVIAHPGRYKFTA 204

Query: 251 DHYLKNRSEMVSIFSDLP 268
                   E+   F D+ 
Sbjct: 205 MQM----DELYKHFKDIG 218


>gi|218767592|ref|YP_002342104.1| hypothetical protein NMA0635 [Neisseria meningitidis Z2491]
 gi|121051600|emb|CAM07900.1| hypothetical protein NMA0635 [Neisseria meningitidis Z2491]
          Length = 278

 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSTVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +  +                    LL    +G  RL  L +    L++
Sbjct: 62  EISVTWRGRTIHVVGLDFDERDENLQNLLAQVRQG--RLKRLEAIAAKLEK 110


>gi|310642752|ref|YP_003947510.1| php domain-containing protein [Paenibacillus polymyxa SC2]
 gi|309247702|gb|ADO57269.1| PHP domain-containing protein [Paenibacillus polymyxa SC2]
          Length = 289

 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+  S  +G  S  + +          +AITD + +    E  ++    G+  + G 
Sbjct: 12 LHTHTQAS--DGMQSPADNVRWAKEKGLAGVAITDHDTVAGLEEALEEGRRIGMTVVPGV 69


>gi|302873856|ref|YP_003842489.1| PHP domain-containing protein [Clostridium cellulovorans 743B]
 gi|307689898|ref|ZP_07632344.1| PHP domain-containing protein [Clostridium cellulovorans 743B]
 gi|302576713|gb|ADL50725.1| PHP domain protein [Clostridium cellulovorans 743B]
          Length = 235

 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 6/100 (6%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +H++ S  +G L+   ++    +     IAI+D N++    E S+     G+  I   +
Sbjct: 8   HIHTTAS--DGYLNPRQVVMFAKSRGIDTIAISDHNSIDGIYEASEAGKEFGVSVIPAIE 65

Query: 75  LDIDMQDN----LKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
           L     D     L      +        I+ LV   E Y+
Sbjct: 66  LSTRFDDESIHVLGYFKDDRYNSLDFHRILRLVKAREAYK 105


>gi|312143800|ref|YP_003995246.1| PHP domain protein [Halanaerobium sp. 'sapolanicus']
 gi|311904451|gb|ADQ14892.1| PHP domain protein [Halanaerobium sp. 'sapolanicus']
          Length = 575

 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFS 54
           L +HS YS  +GA ++  +  K A      IA+TD +   N+  
Sbjct: 346 LHLHSRYS--DGAFTIKKMAQKAAERGYEYIAVTDHSQSLNIAG 387


>gi|284165032|ref|YP_003403311.1| PHP domain protein [Haloterrigena turkmenica DSM 5511]
 gi|284014687|gb|ADB60638.1| PHP domain protein [Haloterrigena turkmenica DSM 5511]
          Length = 228

 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 82/272 (30%), Gaps = 65/272 (23%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HSS S  +G   +  IL++  A    AIA+TD + + ++LE +++A   G+  I 
Sbjct: 4   VELHTHSSLSY-DGRDPVELILEQADAVGLDAIAVTDHDEIDASLEAAERAADYGLLGIP 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++       L    +   P        L     +G                       
Sbjct: 63  GMEISSKAGHVLGFGLEEAVPPGLSYESTLEAIWEQG----------------------- 99

Query: 132 CLSWLQEIGTEGLIMLTGG-SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                      GL ++               +  ++A                + +   R
Sbjct: 100 -----------GLAVIPHPFQESRHGVMARISREELARGDA------------IEVYNSR 136

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLF-------LSEEDYEAHD---VLMAVAHSTVV 240
                   Q  + A   +LP+ A +++         ++  D E      VL A+      
Sbjct: 137 LLTGRANRQAERFARARDLPMTAGSDAHISEMVGQAVTRVDAEERSVDAVLEAIREGRTT 196

Query: 241 SQKDR-------PRVTPDHYLKNRSEMVSIFS 265
            +  R        +       + R+ M+ +F 
Sbjct: 197 VEGKRTPWHISFRQAAGGVTRRVRNTMLGLFR 228


>gi|170782267|ref|YP_001710600.1| hypothetical protein CMS_1901 [Clavibacter michiganensis subsp.
          sepedonicus]
 gi|169156836|emb|CAQ02003.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
          sepedonicus]
          Length = 291

 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  S+ +G  +   +  + AA    A+A+TD ++     + S  A A GI  + G 
Sbjct: 11 LHTHS--SVSDGTETPVELAAQAAAQGLSAVALTDHDSTAGWADASDAALAHGITLVPGM 68

Query: 74 QLDIDMQ 80
          ++   ++
Sbjct: 69 EMSTQLE 75


>gi|67922806|ref|ZP_00516306.1| Helix-hairpin-helix motif [Crocosphaera watsonii WH 8501]
 gi|67855365|gb|EAM50624.1| Helix-hairpin-helix motif [Crocosphaera watsonii WH 8501]
          Length = 294

 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 8/136 (5%)

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
           ++    ++  + +H     ++  +   +  HY  EF        +   E I    Q+   
Sbjct: 158 IITGSHNWSASANHQNDETLLVIKNPLITRHYQQEFERLYNNSTLGIPEYINNKIQE--- 214

Query: 812 FNIQIMPPSVNTPCVDFKVG----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
            NI+  P        +  +     +      L  + G+G + A  I+EA   +PF SLED
Sbjct: 215 -NIKKCPSLSTLKTEENVIKIINLNTASLGELETLPGIGESLAERIIEAREAQPFSSLED 273

Query: 868 FCSRVDSKKLNRRVLE 883
                   +   + LE
Sbjct: 274 LTRVKGIGESKMKKLE 289


>gi|319790405|ref|YP_004152038.1| PHP domain protein [Thermovibrio ammonificans HB-1]
 gi|317114907|gb|ADU97397.1| PHP domain protein [Thermovibrio ammonificans HB-1]
          Length = 220

 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 78/248 (31%), Gaps = 45/248 (18%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT----NNLFSALEFSQKACAAGIQP 69
           L  H+ +S  +G L  + ++ +  A    AIA+TD     N  F     S+       + 
Sbjct: 4   LHTHTIFS--DGELIPSELVRRAEAKGYRAIALTDHVDHSNYDFVIERVSRACELLNRET 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +     +++            P   +P ++     A                  G   V
Sbjct: 62  SLVVIPGVEI---------THVPPAAIPELIHRCRNA------------------GALIV 94

Query: 130 RICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            +    + E    G  L  + GG+   +         +                +Y+ + 
Sbjct: 95  VVHGETVVEPVAPGTNLAAIEGGAD-ILAHPGLLTEREAEFAA--------EKGVYLEIT 145

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             RG++      VV+LA      LV   ++   S+    A  V + V     VS+ D   
Sbjct: 146 ARRGHN-ITNGHVVRLAREAGAKLVINTDAHSPSDLITRAFAVTVGVGAGLTVSEVDACF 204

Query: 248 VTPDHYLK 255
           V  +  +K
Sbjct: 205 VNSETLVK 212


>gi|296314597|ref|ZP_06864538.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           polysaccharea ATCC 43768]
 gi|296838636|gb|EFH22574.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           polysaccharea ATCC 43768]
          Length = 278

 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A   G++ + G 
Sbjct: 4   LHCHSTVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGISEARAEADKLGLRFVNGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +  +                    LL    +G  RL  L +    L++
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQG--RLKRLEAIAAKLEK 110


>gi|329118190|ref|ZP_08246900.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465611|gb|EGF11886.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 278

 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 4/106 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++    A+    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSTIS--DGRLSPAEVVRLAHANGCTLLALTDHDHTGGLPEARAEAAKLGLRLINGA 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
           ++ +  + +                  LL    +G  RL  L +  
Sbjct: 62  EISVTWRGSTIHIVGLDFDEHNETLQNLLARVKKG--RLKRLAAIA 105


>gi|156743084|ref|YP_001433213.1| phosphotransferase domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156234412|gb|ABU59195.1| PHP domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 240

 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +H+ YS  +G  S+  +L+         IAITD + +  ALE  + A    ++ IIG +
Sbjct: 10  HIHTRYS--DGHSSVAQVLEYADHIGLRVIAITDHDTIDGALEAQRMARGFDVEVIIGEE 67

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           +       L +      P     S  +  + A+G
Sbjct: 68  VSTTDGHLLVLFLTHALPPRRPASETIAAAHAQG 101


>gi|71279433|ref|YP_270195.1| phosphotransferase domain-containing protein [Colwellia
          psychrerythraea 34H]
 gi|71145173|gb|AAZ25646.1| PHP domain protein [Colwellia psychrerythraea 34H]
          Length = 301

 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 7  KSPSFVH----LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          K+  F H    L  H++ S  +G LS   ++D+ A  Q   +AITD + +   
Sbjct: 15 KTEGFAHKRIDLHSHTNCS--DGGLSPQTLIDRAANFQIDVLAITDHDTVAGL 65


>gi|315646167|ref|ZP_07899287.1| PHP domain protein [Paenibacillus vortex V453]
 gi|315278366|gb|EFU41682.1| PHP domain protein [Paenibacillus vortex V453]
          Length = 289

 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          L  H+  S  +G    +  +         A+AITD + +    E  Q 
Sbjct: 12 LHSHTQAS--DGMNRPSENVQLAFERGLGALAITDHDTVAGVEEALQA 57


>gi|296133371|ref|YP_003640618.1| PHP domain protein [Thermincola sp. JR]
 gi|296031949|gb|ADG82717.1| PHP domain protein [Thermincola potens JR]
          Length = 575

 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +G  S+  I+++        IAITD 
Sbjct: 345 LHLHSNWS--DGVNSIEQIVEQAKKMGYEYIAITDH 378


>gi|284166550|ref|YP_003404829.1| PHP domain protein [Haloterrigena turkmenica DSM 5511]
 gi|284016205|gb|ADB62156.1| PHP domain protein [Haloterrigena turkmenica DSM 5511]
          Length = 244

 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 2/94 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            VH++ S  +G  +   ++D         IA+TD + +  A E ++ A    +  I+GC+
Sbjct: 22  HVHTAASY-DGTTTPAELVDAARRAGLDGIAVTDHDTIDGAREVARLAPD-DLLVIVGCE 79

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           +       L +            +         G
Sbjct: 80  VSTADGHLLALGVDAAPEPGRPLARTARAVREAG 113


>gi|226943681|ref|YP_002798754.1| phosphoesterase [Azotobacter vinelandii DJ]
 gi|226718608|gb|ACO77779.1| Phosphoesterase (PHP family) [Azotobacter vinelandii DJ]
          Length = 287

 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +GALS   ++ +        +A+TD + L    E    +    I+ I 
Sbjct: 3  VDLHCHSTAS--DGALSPAEVVCRAHGRGVRLLALTDHDTLDGLPEAQAASAGLDIELIN 60


>gi|322369142|ref|ZP_08043707.1| PHP domain protein [Haladaptatus paucihalophilus DX253]
 gi|320550874|gb|EFW92523.1| PHP domain protein [Haladaptatus paucihalophilus DX253]
          Length = 228

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +G   +  +L++  A    AIA+TD + + ++L+ ++ A   G+  I 
Sbjct: 4  VELHCHSALS-HDGRDPVELLLEQAKAVDLDAIAVTDHDEIDASLKAAELAPEYGLVGIP 62

Query: 72 GC 73
          G 
Sbjct: 63 GM 64


>gi|169837691|ref|ZP_02870879.1| hypothetical protein cdivTM_11437 [candidate division TM7
          single-cell isolate TM7a]
          Length = 48

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 22/35 (62%)

Query: 4  YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAA 38
           + K+  +VHL  H+ +SLL+G   + ++++++  
Sbjct: 14 RMLKASDYVHLHNHTHHSLLDGLTKIPDLVNRVKE 48


>gi|111022961|ref|YP_705933.1| hypothetical protein RHA1_ro05998 [Rhodococcus jostii RHA1]
 gi|110822491|gb|ABG97775.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 284

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 11/89 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  S  +++    A     +AITD +      E    A  AG+  + G 
Sbjct: 5   LHTHSTAS--DGTDSPADLVRAAGAAGLDIVAITDHDTTAGWAEA-VAALPAGLALVRGM 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++  +         +G+   P    ++  
Sbjct: 62  EMSCE--------GRGEDGRPVAVHLLAY 82


>gi|257470616|ref|ZP_05634706.1| PHP domain protein [Fusobacterium ulcerans ATCC 49185]
          Length = 300

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS YS  +G  S   I+     ++   +A+TD N++    E ++    AGI+ I G 
Sbjct: 7  LHMHSLYSD-DGEFSPEEIIAIGKKEEMEIMALTDHNSVKGVDEMTEYGKKAGIKVISGV 65

Query: 74 QLDI 77
          ++D 
Sbjct: 66 EIDC 69


>gi|307130976|ref|YP_003882992.1| hypothetical protein Dda3937_00578 [Dickeya dadantii 3937]
 gi|306528505|gb|ADM98435.1| conserved protein [Dickeya dadantii 3937]
          Length = 286

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 43/111 (38%), Gaps = 5/111 (4%)

Query: 5   LEKSPSF--VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           +  SP+F    L  H++ S  +G L+   ++ +  + +   +AITD +   +  E     
Sbjct: 1   MPVSPTFPLYDLHSHTTAS--DGLLTPTELVQRAVSMRVSVLAITDHDTTAALDEAYAAI 58

Query: 63  CAAGIQPIIGC-QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
               +   +        + +N ++   G       P++  L+     Y+ L
Sbjct: 59  QRQALPLRLISGVEISTVWENHEIHIVGLGLDCRHPALTSLLQQQVQYREL 109


>gi|325141630|gb|EGC64092.1| PHP domain protein [Neisseria meningitidis 961-5945]
 gi|325141662|gb|EGC64123.1| PHP domain protein [Neisseria meningitidis 961-5945]
 gi|325141696|gb|EGC64156.1| PHP domain protein [Neisseria meningitidis 961-5945]
 gi|325197673|gb|ADY93129.1| PHP domain protein [Neisseria meningitidis G2136]
          Length = 278

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSIVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +  +                    LL    +G  RL  L +    L++
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQG--RLKRLEAIAAKLEK 110


>gi|303257825|ref|ZP_07343835.1| PHP domain protein [Burkholderiales bacterium 1_1_47]
 gi|302859428|gb|EFL82509.1| PHP domain protein [Burkholderiales bacterium 1_1_47]
          Length = 281

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS++S  +G      ++ +   +    I++TD +           A   G+Q + G 
Sbjct: 9  LHMHSTFS--DGVEEPEELVIRAKNNGVELISLTDHDETGGLERMKAAAAQHGLQFVNGV 66

Query: 74 QLDIDMQD 81
          ++  D  +
Sbjct: 67 EISADYGE 74


>gi|24374542|ref|NP_718585.1| TrpH family protein [Shewanella oneidensis MR-1]
 gi|24349134|gb|AAN56029.1|AE015738_4 TrpH family protein [Shewanella oneidensis MR-1]
          Length = 286

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G L+ + ++ +         AITD + +          +A A  ++ I 
Sbjct: 10 LHSHTTAS--DGHLTPSELVARALEKGVQLFAITDHDTVAGLSEARAFNQAQAEPLKLIS 67

Query: 72 GCQLDIDMQD 81
          G ++      
Sbjct: 68 GVEISTRWNS 77


>gi|21228391|ref|NP_634313.1| hypothetical protein MM_2289 [Methanosarcina mazei Go1]
 gi|20906864|gb|AAM31985.1| hypothetical protein MM_2289 [Methanosarcina mazei Go1]
          Length = 214

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNLFSALEFSQKAC 63
          L  H+ +S  +G L  + ++ +       AIA+TD     NL   L+ ++KA 
Sbjct: 4  LHTHTIFS--DGELIPSELVRRAVIHGYEAIALTDHADYTNLEQLLDAAKKAK 54


>gi|117919969|ref|YP_869161.1| phosphotransferase domain-containing protein [Shewanella sp.
          ANA-3]
 gi|117612301|gb|ABK47755.1| PHP C-terminal domain protein [Shewanella sp. ANA-3]
          Length = 286

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G L+ + ++ +         AITD + +          +A A  ++ I 
Sbjct: 10 LHSHTTAS--DGHLTPSELVARALEKGVQLFAITDHDTVAGLGEARAFNQAQAEPLKLIS 67

Query: 72 GCQLDIDMQD 81
          G ++      
Sbjct: 68 GVEISTRWNS 77


>gi|261364156|ref|ZP_05977039.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           mucosa ATCC 25996]
 gi|288567751|gb|EFC89311.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           mucosa ATCC 25996]
          Length = 278

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A   G++ + G 
Sbjct: 4   LHCHSTVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADKLGLRFVNGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +                       LL    +G  RL  L +    L++
Sbjct: 62  EISVTWHGRTIHVVGLDFDEQDENLQNLLAQVRQG--RLKRLEAIADKLEK 110


>gi|124486486|ref|YP_001031102.1| hypothetical protein Mlab_1674 [Methanocorpusculum labreanum Z]
 gi|124364027|gb|ABN07835.1| PHP C-terminal domain protein [Methanocorpusculum labreanum Z]
          Length = 232

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 84/242 (34%), Gaps = 58/242 (23%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H+S S  +G   + +++ K       AI+ITD +    A +        GI  I G 
Sbjct: 8   LHIHTSASA-DGKCPVKDVIAKAKERGLDAISITDHDTTEGAKQAL-ALKNPGILIIPGI 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           +                            VST +G   L+   ++M+  +QGK      L
Sbjct: 66  E----------------------------VSTKQG-HLLVLGTTKMF--EQGKDV----L 90

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
             ++E   EG + +          A   +S    ++      ++F  R Y+         
Sbjct: 91  ETIREAKAEGCLTIVPHPYHRWRHAVGLHSPDALQEADA--IEVFNSRYYIG-------- 140

Query: 194 RYRESQVVQLAYTHELPLVATNNSLF----------LSEEDYEAHDVLMAVAHSTVVSQK 243
               S+  ++A  +  P+ A +++            +  E+     VL A+    + S+ 
Sbjct: 141 -TANSRAAKVAKKYHKPMTAGSDAHTCQFVGYGINIIDAEERTVASVLDAIRKGKIESRC 199

Query: 244 DR 245
            +
Sbjct: 200 KK 201


>gi|118595136|ref|ZP_01552483.1| PHP-like protein [Methylophilales bacterium HTCC2181]
 gi|118440914|gb|EAV47541.1| PHP-like protein [Methylophilales bacterium HTCC2181]
          Length = 292

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  S   ++    +     +A+TD +++    +  ++A A G+  I G 
Sbjct: 8  LHCHSTIS--DGLFSPTELVKYAHSKGVQVLALTDHDDIDGLPQAREQASALGMVFINGV 65

Query: 74 QLDIDMQDN 82
          ++ +  Q  
Sbjct: 66 EISVTWQKR 74


>gi|114047034|ref|YP_737584.1| phosphotransferase domain-containing protein [Shewanella sp.
          MR-7]
 gi|113888476|gb|ABI42527.1| PHP C-terminal domain protein [Shewanella sp. MR-7]
          Length = 286

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G L+ + ++ +         AITD + +          +A A  ++ I 
Sbjct: 10 LHSHTTAS--DGHLTPSELVARALEKGVQLFAITDHDTVAGLSEARAFNQAQAEPLKLIS 67

Query: 72 GCQLDIDMQD 81
          G ++      
Sbjct: 68 GVEISTRWNS 77


>gi|262374187|ref|ZP_06067463.1| metal-dependent phosphoesterase [Acinetobacter junii SH205]
 gi|262310745|gb|EEY91833.1| metal-dependent phosphoesterase [Acinetobacter junii SH205]
          Length = 283

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  H+  S  +G  S   ++      +   +A+TD + +       + A    IQ I 
Sbjct: 4  VDLHTHTHIS--DGTFSPEQLVQAAVDLKIHMLAVTDHDTIDGLSSARKYAQDHDIQIIS 61

Query: 72 GC 73
          G 
Sbjct: 62 GV 63


>gi|300788855|ref|YP_003769146.1| phosphoesterase [Amycolatopsis mediterranei U32]
 gi|299798369|gb|ADJ48744.1| putative phosphoesterase [Amycolatopsis mediterranei U32]
          Length = 272

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G    + +           +A+TD +           A +AG++ + G 
Sbjct: 5  LHAHSTAS--DGTTPPSELPRLATEAGLTVLALTDHDTFAGLPAAL--AASAGVEIVPGV 60

Query: 74 QLDIDMQD 81
          ++   + D
Sbjct: 61 EISCRLDD 68


>gi|152991030|ref|YP_001356752.1| family X DNA polymerase IV [Nitratiruptor sp. SB155-2]
 gi|151422891|dbj|BAF70395.1| DNA polymerase IV, family X [Nitratiruptor sp. SB155-2]
          Length = 571

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+ YS  +G  ++ ++           IAITD 
Sbjct: 341 LHMHTVYS--DGKHTIEDMAKAAKEMGYEYIAITDH 374


>gi|261405787|ref|YP_003242028.1| PHP domain-containing protein [Paenibacillus sp. Y412MC10]
 gi|261282250|gb|ACX64221.1| PHP domain protein [Paenibacillus sp. Y412MC10]
          Length = 288

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          L  H+  S  +G  + +  +         A+AITD + +    E  Q      I
Sbjct: 12 LHSHTQAS--DGMNTPSENVQLAYERGLGALAITDHDTVAGIEEALQAGERLNI 63


>gi|300863596|ref|ZP_07108540.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Oscillatoria sp. PCC 6506]
 gi|300338395|emb|CBN53682.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Oscillatoria sp. PCC 6506]
          Length = 498

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 14/136 (10%)

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
             + A+YG ++      A++  ++  +  H+  EF      + +     I +   +A++ 
Sbjct: 366 WTEAANYGNDE------ALLVIESETVAAHFEREFERLYQNVVLGLPRAIAQKI-EAQKQ 418

Query: 813 NIQIMPPS----VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
               +P S    VN         +      L  + GVG   A+ I+ A   +PF SLED 
Sbjct: 419 LCAALPKSDGKMVNAAEKKLVNLNVANQAELETLPGVGPKLAQKIIAARKQQPFSSLEDL 478

Query: 869 CSRVDSKKLNRRVLES 884
             RV    + +++LE 
Sbjct: 479 -DRVP--GVGKKMLER 491


>gi|298369655|ref|ZP_06980972.1| PHP domain protein [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282212|gb|EFI23700.1| PHP domain protein [Neisseria sp. oral taxon 014 str. F0314]
          Length = 278

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A A G++ + G 
Sbjct: 4   LHCHSTVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADAIGLRFVNGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +  +                    LL    +G  RL  L +    L++
Sbjct: 62  EISVTWRGRTIHVVGLDFNEQDENLQNLLAQVRQG--RLKRLEAIAAKLEK 110


>gi|255065753|ref|ZP_05317608.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           sicca ATCC 29256]
 gi|255050071|gb|EET45535.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           sicca ATCC 29256]
          Length = 278

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A   G++ + G 
Sbjct: 4   LHCHSTVS--DGMLSPAEVVRLAHKNGCTLLALTDHDHTGGIAEARAEADKLGMRFVNGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +  +                    LL    +G  RL  L +    L++
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQG--RLKRLEAIAVKLEK 110


>gi|313672802|ref|YP_004050913.1| php domain protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939558|gb|ADR18750.1| PHP domain protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 278

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 8/113 (7%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGI 67
           V L  HS YS  +G+L++  IL          +AITD + +     F          AG+
Sbjct: 2   VDLHCHSRYS--DGSLTIEEILKLAEKSDIDVLAITDHDTVDGIEHFVNTDSNVQKVAGV 59

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL--VSTAEGYQRLIELVSR 118
           +  +           L + ++      T+  +            + L EL+ R
Sbjct: 60  EISVDWDKGTFHLVGLFIDHKNTKLRETLDKLKHFRRERNINLIKNLSELLGR 112


>gi|296121981|ref|YP_003629759.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776]
 gi|296014321|gb|ADG67560.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776]
          Length = 570

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 76/232 (32%), Gaps = 20/232 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H+  +  +GA S+  +++   A     IAITD +         + A A G+  +   
Sbjct: 338 LHMHT--TATDGAGSIEEMIEGARAAGLKYIAITDHS--------KRVAMANGLDSVRLR 387

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR--I 131
           +    +    + T   +        I+   +       L E    + +L  G +     I
Sbjct: 388 EHWRKIDSIRQKTRGIEVLCGIECDILEDATLDLPDDVLAEADWVIAVLHYGLRQPAEMI 447

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRHR 190
               L  I    +  + G  SG         S   AE    TF K   D  + + +  + 
Sbjct: 448 EKRLLAAIQNPHVDCI-GHPSG-----RLIGSRAPAEINYHTFLKAAQDYGVMLEINANP 501

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                 + Q  + A    +P+V  ++S  +       + V  A       + 
Sbjct: 502 ARLDLNDIQSAR-AKELRIPIVINSDSHHIHGFQVLEYGVHQARRAGLTKAD 552


>gi|150400728|ref|YP_001324494.1| phosphotransferase domain-containing protein [Methanococcus
          aeolicus Nankai-3]
 gi|150013431|gb|ABR55882.1| PHP domain protein [Methanococcus aeolicus Nankai-3]
          Length = 297

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 14 LQVHSSYS---------LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          L +HS YS           +      NI+          IAITD N +   LE  +    
Sbjct: 10 LHIHSKYSGLMKYMGLTFPDSVEEPKNIIRSAKKKGLDIIAITDHNTIRGGLETKKLEKE 69

Query: 65 AGIQPIIGCQLDIDMQD 81
           G++ I+G ++     +
Sbjct: 70 YGVEVIVGSEIMTKDGE 86


>gi|206577138|ref|YP_002239003.1| putative phosphoesterase [Klebsiella pneumoniae 342]
 gi|206566196|gb|ACI07972.1| putative phosphoesterase [Klebsiella pneumoniae 342]
          Length = 287

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 53/123 (43%), Gaps = 8/123 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP-IIG 72
           L  H++ S  +G L+   ++ +    +   +AITD +++ +     ++   AG+   ++ 
Sbjct: 12  LHSHTTAS--DGRLTPQELVHRAHEMRVGTLAITDHDSVAAIPAAREEIARAGLPLTLVN 69

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                 + +N ++   G       P++  L+   +  ++L     R  ++ +  +  RI 
Sbjct: 70  GVEISTLWENHEIHIVGLNIDIAHPTMTALLEEQKARRQL-----RGQMIAERLEKARIP 124

Query: 133 LSW 135
            +W
Sbjct: 125 GAW 127


>gi|294661171|ref|YP_003573046.1| hypothetical protein Aasi_1597 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336321|gb|ACP20918.1| hypothetical protein Aasi_1597 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 566

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 10/66 (15%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            VH+ YS  +G  SL N+     A     I ITD +           A A G++P    +
Sbjct: 332 HVHTQYS--DGQTSLENMAAYCQALGYSYIGITDHS--------QSAAYAGGLRPHTVQE 381

Query: 75  LDIDMQ 80
               + 
Sbjct: 382 QHHAID 387


>gi|16331686|ref|NP_442414.1| hypothetical protein sll0549 [Synechocystis sp. PCC 6803]
 gi|1001243|dbj|BAA10484.1| sll0549 [Synechocystis sp. PCC 6803]
          Length = 249

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
              P F +  +H+  S  +G ++   ++++    +   +AITD + +       +
Sbjct: 48  TSCPRFYNFHLHTRCS--DGQMTPEGLIEQAIHQELQGLAITDHHCVAGYYRAQR 100


>gi|313159489|gb|EFR58852.1| PHP domain protein [Alistipes sp. HGB5]
          Length = 296

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS YS  +G     +I+ K AA      A+TD N +    E    A  AG++ + G 
Sbjct: 6  LHIHSQYSS-DGEFRPADIVGKCAAGGVDLFALTDHNTVRGLDEACDGALQAGLEFVPGI 64

Query: 74 QLDIDMQ 80
          ++D   +
Sbjct: 65 EIDCSFE 71


>gi|300855365|ref|YP_003780349.1| putative metal-dependent phosphoesterase [Clostridium ljungdahlii
          DSM 13528]
 gi|300435480|gb|ADK15247.1| predicted metal-dependent phosphoesterase, PHP family
          [Clostridium ljungdahlii DSM 13528]
          Length = 285

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +H++ S  +G L    ++     +    IAITD + L    E   +    GI+ I 
Sbjct: 8  HLHTNAS--DGNLFPAKLVCMAKREGVDIIAITDHDTLSGIDEALMEGKKIGIKVIP 62


>gi|290512943|ref|ZP_06552307.1| phosphoesterase [Klebsiella sp. 1_1_55]
 gi|289774556|gb|EFD82560.1| phosphoesterase [Klebsiella sp. 1_1_55]
          Length = 287

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 53/123 (43%), Gaps = 8/123 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP-IIG 72
           L  H++ S  +G L+   ++ +    +   +AITD +++ +     ++   AG+   ++ 
Sbjct: 12  LHSHTTAS--DGRLTPQELVHRAHEMRVGTLAITDHDSVAAIPAAREEIARAGLPLTLVN 69

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                 + +N ++   G       P++  L+   +  ++L     R  ++ +  +  RI 
Sbjct: 70  GVEISTLWENHEIHIVGLNIDIAHPTMTALLEEQKARRQL-----RGQMIAERLEKARIP 124

Query: 133 LSW 135
            +W
Sbjct: 125 GAW 127


>gi|271967158|ref|YP_003341354.1| hypothetical protein Sros_5876 [Streptosporangium roseum DSM 43021]
 gi|270510333|gb|ACZ88611.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
          Length = 401

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 2/95 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+ +S  +G+LS++ +    A      +A+TD N +    E    A  A I  I G 
Sbjct: 154 LHTHTVHS--DGSLSVSELACLAADRGLDFLAVTDHNTVSHHTELPAAATYAAITLIPGQ 211

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           ++  D+       + G   F   P +        G
Sbjct: 212 EVTTDLGHANAFGDIGWIDFRDSPDLWARTVRDRG 246


>gi|329922616|ref|ZP_08278168.1| PHP domain protein [Paenibacillus sp. HGF5]
 gi|328941958|gb|EGG38241.1| PHP domain protein [Paenibacillus sp. HGF5]
          Length = 288

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          L  H+  S  +G  + +  +         A+AITD + +    E  Q      I
Sbjct: 12 LHSHTQAS--DGMNTPSENVQLAYERGLGALAITDHDTVAGIEEALQAGERLNI 63


>gi|291563199|emb|CBL42015.1| hypothetical protein CK3_24630 [butyrate-producing bacterium SS3/4]
          Length = 67

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
             S+ +I G+G   A  I EA+ D  F S EDF +R    K    ++E
Sbjct: 1   MPSINSIDGLGEKAADSIEEAAKDGKFLSKEDFRNRTKVSKTICDLME 48


>gi|172039327|ref|YP_001805828.1| hypothetical protein cce_4414 [Cyanothece sp. ATCC 51142]
 gi|171700781|gb|ACB53762.1| conserved hypothetical protein [Cyanothece sp. ATCC 51142]
          Length = 545

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 36/106 (33%), Gaps = 2/106 (1%)

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQ-DARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
           +  HY  EF        +   E I    Q D +     + P SV        +       
Sbjct: 436 ITAHYQQEFNRLYDNSTLGIPETINNKIQADIKNCPTLLTPKSVINQTEKINLNT-ASLE 494

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            L  + G+G + A  I+E    +PF SLED            + LE
Sbjct: 495 ELETLPGIGRSLAERIIEVRKIRPFTSLEDLTRVKGIGNSKIKELE 540


>gi|307266752|ref|ZP_07548278.1| PHP domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918243|gb|EFN48491.1| PHP domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 572

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH++YS  +GA +L  +++         I ITD 
Sbjct: 340 HVHTTYS--DGASTLIEMVEAARKLGYKYIGITDH 372


>gi|260220461|emb|CBA28021.1| Protein trpH [Curvibacter putative symbiont of Hydra
          magnipapillata]
          Length = 284

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  S  +G L+   + ++  ++     A+TD + +         A A G++ + G 
Sbjct: 9  LHCHSVVS--DGTLTPEALAERAKSNGVELWALTDHDEIGGLQRARDAAHAQGMRYLTGV 66

Query: 74 QLDIDM 79
          ++ +  
Sbjct: 67 EISVTF 72


>gi|268317483|ref|YP_003291202.1| PHP domain-containing protein [Rhodothermus marinus DSM 4252]
 gi|262335017|gb|ACY48814.1| PHP domain protein [Rhodothermus marinus DSM 4252]
          Length = 279

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 67/247 (27%), Gaps = 38/247 (15%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H+S S  +G LS   ++ +        +AITD + +    E  Q A    +  I G 
Sbjct: 9   LHLHTSRS--DGRLSPAELVRRAREAGLYCVAITDHDTIDGLEEARQAAARWAMVVIPGV 66

Query: 74  Q--------------LDIDMQDNLKMTNQGKTPFPTVPSI-VLLVSTAEGYQRLIELVSR 118
           +                 D                    +  +L    E   RL E   +
Sbjct: 67  ELSVQVEEEEVHLLGYFFDPDHPALREALTAYRKAREERLAAMLARLQEVGVRLSEEQVQ 126

Query: 119 MYLLDQGKQSVRICLS-----WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA------ 167
             +         +  +     + +         L  G  G + +  +     VA      
Sbjct: 127 TAVGHGVPGRPHVARALVAAGYAESYREAFQRYLLPGGPGYVPKPAWTAEEAVAVLHEAG 186

Query: 168 -EKRLLTFKKLFGDRLYVNL---------QRHRGYDRYRESQVVQLAYTHELPLVATNNS 217
               L    +   DR++  L           H  +  Y      Q+A    L     ++ 
Sbjct: 187 GIAVLAHPGEHLRDRVFRALLQAGIDGIEVIHPAHSYYLVQHYRQVARDFGLLETGGSDY 246

Query: 218 LFLSEED 224
                ED
Sbjct: 247 HGHRPED 253


>gi|85860226|ref|YP_462427.1| phosphotransferase domain-containing protein [Syntrophus
          aciditrophicus SB]
 gi|85723317|gb|ABC78260.1| php domain containing protein (trph) [Syntrophus aciditrophicus
          SB]
          Length = 281

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +G ++ +N++ + +      +AI D + +    E +  A   GI  I   
Sbjct: 4  LHCHTTAS--DGVVTPSNVIRQASRKGIAVLAIADHDTVNGLDEAAGAAEKEGICLIPAI 61

Query: 74 QLDIDMQ 80
          +L +   
Sbjct: 62 ELSVAFP 68


>gi|325847024|ref|ZP_08169850.1| nucleic acid-binding domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480996|gb|EGC84041.1| nucleic acid-binding domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 365

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L++H+  + L+G + ++ +  ++ +    A  ITDT  L +  +   K     I+ + 
Sbjct: 285 VELEIHTKMTNLDGFVDMDELAKRLKSWGHTACGITDTETLQALPDMYDKLGKNDIKMLA 344

Query: 72  GC 73
           G 
Sbjct: 345 GS 346


>gi|298675552|ref|YP_003727302.1| PHP domain-containing protein [Methanohalobium evestigatum
          Z-7303]
 gi|298288540|gb|ADI74506.1| PHP domain protein [Methanohalobium evestigatum Z-7303]
          Length = 212

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNLFSALEFSQKAC 63
          L  H+ +S  +G L  + ++ +       AIAITD     N    ++ ++KA 
Sbjct: 4  LHTHTVFS--DGELIPSELVRRAVVTGYEAIAITDHADYTNFEQLVDVAEKAK 54


>gi|297621028|ref|YP_003709165.1| phosphoesterase [Waddlia chondrophila WSU 86-1044]
 gi|297376329|gb|ADI38159.1| phosphoesterase [Waddlia chondrophila WSU 86-1044]
          Length = 274

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L  HS+ S  +G  S   ++D         ++ITD + L
Sbjct: 9  LHCHSTCS--DGTASPKELIDLAIDQGLSGLSITDHDTL 45


>gi|257068312|ref|YP_003154567.1| putative metal-dependent phosphoesterase, PHP family
          [Brachybacterium faecium DSM 4810]
 gi|256559130|gb|ACU84977.1| predicted metal-dependent phosphoesterase, PHP family
          [Brachybacterium faecium DSM 4810]
          Length = 294

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 8  SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          +P  + L  HS+ S  +G  S+  +  +        +A+TD + +  
Sbjct: 9  TPQRIDLHAHSACS--DGTTSVEELFAQARTAGLDVLALTDHDTVAG 53


>gi|262276081|ref|ZP_06053890.1| putative metal-dependent phosphoesterase [Grimontia hollisae CIP
           101886]
 gi|262219889|gb|EEY71205.1| putative metal-dependent phosphoesterase [Grimontia hollisae CIP
           101886]
          Length = 291

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 56/172 (32%), Gaps = 21/172 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII-- 71
           L  H++ S  +G  +   ++ +    +   +AITD + +    E  + A A    P+   
Sbjct: 5   LHSHTTAS--DGRFTPEQLVKRAVDFRVNVLAITDHDTVAGLDEA-KAAVARDKLPLHLI 61

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
                  +  N  +   G    P  P +  L++   G +               K    +
Sbjct: 62  DGIEISTVWQNKDIHIVGLNIDPQSPVLQALIAEQAGRR---------------KARAEM 106

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK-RLLTFKKLFGDRL 182
               L++    G +      +G +       +  + E+  +   + +F   L
Sbjct: 107 IAERLEKQRIPGALEGAQALAGEVPLTRAHFARWMVEQGHVKNMQSVFKKYL 158


>gi|331694930|ref|YP_004331169.1| PHP domain-containing protein [Pseudonocardia dioxanivorans
          CB1190]
 gi|326949619|gb|AEA23316.1| PHP domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 287

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++   AA     +AITD +           A  AG++ + G 
Sbjct: 6  LHAHSTAS--DGTDTPEELVATAAAAGVDVLAITDHDTTGGWARAVG-ALPAGMRLVRGA 62

Query: 74 QLDIDMQDN 82
          +      D 
Sbjct: 63 EFSCVSDDG 71


>gi|220913252|ref|YP_002488561.1| PHP domain protein [Arthrobacter chlorophenolicus A6]
 gi|219860130|gb|ACL40472.1| PHP domain protein [Arthrobacter chlorophenolicus A6]
          Length = 282

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G     +++   A      +A+TD ++     E S  A   G+  + G 
Sbjct: 5   LHAHSNVS--DGTEKPADVMASAARAGLDVVALTDHDSTDGWAEASAAAIEVGVALVPGM 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           ++     + + +        P+ P ++
Sbjct: 63  EVSCRTAEGISVHLLSYLHDPSHPGLL 89


>gi|20808870|ref|NP_624041.1| family X DNA polymerase IV [Thermoanaerobacter tengcongensis MB4]
 gi|20517526|gb|AAM25645.1| DNA polymerase IV (family X) [Thermoanaerobacter tengcongensis MB4]
          Length = 570

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH++YS  +G  SL +++ K        IAITD 
Sbjct: 340 HVHTTYS--DGRNSLEDMVRKARDLGYKYIAITDH 372


>gi|225077289|ref|ZP_03720488.1| hypothetical protein NEIFLAOT_02348 [Neisseria flavescens
           NRL30031/H210]
 gi|224951433|gb|EEG32642.1| hypothetical protein NEIFLAOT_02348 [Neisseria flavescens
           NRL30031/H210]
          Length = 278

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A   G+  + G 
Sbjct: 4   LHCHSTVS--DGMLSPTEVVRLARQNGCTLLALTDHDHTGGLAEARAEADTLGLPFVNGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +  +D                   LL    +G  RL  L +    L++
Sbjct: 62  EISVTWRDRTIHVVGLDFDEHNKTLQNLLAEVRKG--RLKRLEAIAAKLEK 110


>gi|238919594|ref|YP_002933109.1| hypothetical protein NT01EI_1693 [Edwardsiella ictaluri 93-146]
 gi|238869163|gb|ACR68874.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 303

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 1  LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L  + E  P+   L  H+  S  +G LS   ++ +        +AITD + L   
Sbjct: 3  LAHFPEGRPALFDLHSHTRAS--DGLLSPEALVVRAVERGVTTLAITDHDTLGGI 55


>gi|254518395|ref|ZP_05130451.1| metal-dependent phosphoesterase [Clostridium sp. 7_2_43FAA]
 gi|226912144|gb|EEH97345.1| metal-dependent phosphoesterase [Clostridium sp. 7_2_43FAA]
          Length = 278

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L +HS  S  +G  + ++I+          +++TD + L    E   +A A  ++ I 
Sbjct: 6  LHIHSICS--DGRFTPSDIVKMAKEKNLDYVSLTDHDTLTGIKEALSEAEALNVKLIP 61


>gi|226365467|ref|YP_002783250.1| hypothetical protein ROP_60580 [Rhodococcus opacus B4]
 gi|226243957|dbj|BAH54305.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 284

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 11/89 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  S  +++    A     +AITD +      E    A   G+  + G 
Sbjct: 5   LHTHSTAS--DGTDSPADLVRAAGAAGLDIVAITDHDTTAGWAEA-VAALPKGLALVRGM 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++  +         +G+   P    ++  
Sbjct: 62  EMSCE--------GRGEDGRPVAVHLLAY 82


>gi|288556832|ref|YP_003428767.1| hypothetical protein BpOF4_19180 [Bacillus pseudofirmus OF4]
 gi|288547992|gb|ADC51875.1| hypothetical protein BpOF4_19180 [Bacillus pseudofirmus OF4]
          Length = 288

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 68/212 (32%), Gaps = 29/212 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS+ S  +G  +  +++DK        +A+TD + +       +   A G+  I G 
Sbjct: 9   LHMHSTAS--DGNYTPKDLMDKCKEAGLEIVALTDHDTVQGVEAAIEAGQALGLAVIPGI 66

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ--RLIELVSRM------------ 119
           +L   +             +        L +  + Y+  RL E+++++            
Sbjct: 67  ELSTKIHGKSVHILGYGIDYTNNNLKSFLATQQQ-YRSERLDEMIAKLSRIGIELNRQQV 125

Query: 120 --YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA-----FFFNSSQVAEKRLL 172
             ++         +  + +           +   +     A     F     ++  K  +
Sbjct: 126 LKHVDGGSIGRPHVAKAMIDAGYVN-----SVSEAFDEFLAEGKPGFVEKQKEMTVKEAI 180

Query: 173 TFKKLFGDRLYVNLQRHRGYDRYRESQVVQLA 204
            F   +     V    + G D   ES V++  
Sbjct: 181 EFIHKYEGVAIVAHPDYYGLDEEIESWVIEWG 212


>gi|217970100|ref|YP_002355334.1| PHP domain protein [Thauera sp. MZ1T]
 gi|217507427|gb|ACK54438.1| PHP domain protein [Thauera sp. MZ1T]
          Length = 301

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS  S+ +G L    ++ +  A+    +A+TD + L         A A G+  + 
Sbjct: 14 VDLHCHS--SVSDGWLEPEALVLRAIANGVELLALTDHDELGGIASAQLVARAHGLAFVP 71

Query: 72 GC 73
          G 
Sbjct: 72 GV 73


>gi|56964441|ref|YP_176172.1| hypothetical protein ABC2676 [Bacillus clausii KSM-K16]
 gi|56910684|dbj|BAD65211.1| DNA-directed DNA polymerase beta chain [Bacillus clausii KSM-K16]
          Length = 571

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H+++S  +GA SL  + +         IAITD +       F + A    I+ +   
Sbjct: 339 LHMHTTWS--DGAHSLEEMAEAAKKRGYTHIAITDHS------RFLKVANGLSIERLKQQ 390

Query: 74  QLD 76
              
Sbjct: 391 HEY 393


>gi|89094113|ref|ZP_01167056.1| hypothetical protein MED92_16260 [Oceanospirillum sp. MED92]
 gi|89081588|gb|EAR60817.1| hypothetical protein MED92_16260 [Oceanospirillum sp. MED92]
          Length = 277

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 8/163 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           PS+  L  HS+ S  +GAL+   +L++  +     +A+TD + +   +   ++    GI+
Sbjct: 4   PSY-DLHCHSTAS--DGALAPLELLERARSRDIKILALTDHDTVQG-VREIERYSDEGIK 59

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I G +L       +           +      L    E    L    S+       K  
Sbjct: 60  IIPGTELTCLWNGRVIHLVGLGFDSGSSELNAYLARINE----LRVARSQAIAQRMVKLG 115

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
           +       Q++   G++     +   +++    N  Q  +K L
Sbjct: 116 LPDLYDDAQKLAGNGVVGRPHYARAMVEKGLVANEQQAFKKYL 158


>gi|269836736|ref|YP_003318964.1| PHP domain-containing protein [Sphaerobacter thermophilus DSM
          20745]
 gi|269785999|gb|ACZ38142.1| PHP domain protein [Sphaerobacter thermophilus DSM 20745]
          Length = 283

 Score = 52.7 bits (125), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  H++ S  +G +S   +++  +      +A+TD ++     E        G+  I 
Sbjct: 11 VDLHTHTTAS--DGVISPAELVELASQRGLRVLAVTDHDSTDGIDEAIAAGQRLGVTVIP 68

Query: 72 GCQLDIDMQDN 82
          G +L  + +  
Sbjct: 69 GIELGTETEHG 79


>gi|317121767|ref|YP_004101770.1| ATP-dependent DNA helicase RecG [Thermaerobacter marianensis DSM
            12885]
 gi|315591747|gb|ADU51043.1| ATP-dependent DNA helicase RecG [Thermaerobacter marianensis DSM
            12885]
          Length = 924

 Score = 52.7 bits (125), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%)

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++     + G    +  +VV  Q+  TR G  +  +T S+ +   +A FF
Sbjct: 273  TWKPIARLVPGEVATVQGVVVDAQRVPTRTGRTVVRITVSDGSGRLDAVFF 323


>gi|295101769|emb|CBK99314.1| Predicted metal-dependent phosphoesterases (PHP family)
           [Faecalibacterium prausnitzii L2-6]
          Length = 285

 Score = 52.7 bits (125), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 3/105 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G++ ++ +    A     A+A++D +   SA          G++ I   
Sbjct: 5   LHTHSTCS--DGSVPIHRLPLMAARLGLSALALSDHDTTLSAQYAYDHPVQDGVRLIPAA 62

Query: 74  Q-LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
           +    D + + ++      P    P++          +    L S
Sbjct: 63  ELTGYDFERSHRVHLLTFWPDLDCPALRRHCDIMRQRRNECALQS 107


>gi|256828396|ref|YP_003157124.1| PHP domain protein [Desulfomicrobium baculatum DSM 4028]
 gi|256577572|gb|ACU88708.1| PHP domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 217

 Score = 52.7 bits (125), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNL-FSALEFSQKACAAGI 67
          L  HSS+S  +G L    +  +       AIAITD    +N+ F+    +  A    I
Sbjct: 4  LHTHSSFS--DGELIPAELARRAKVAGYRAIAITDHADASNMDFALPRVAAMAKEYSI 59


>gi|257463093|ref|ZP_05627494.1| phosphotransferase domain-containing protein [Fusobacterium sp.
          D12]
          Length = 272

 Score = 52.7 bits (125), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L +HS+ S  +G+ S   ++      +  AIA+TD + +   LE   +A   G++ ++
Sbjct: 3  VDLHIHSTAS--DGSFSPKQVVQLAMMKKMRAIALTDHDTIDGLLEAKCEADKWGLEFVM 60

Query: 72 GCQLDIDMQDN 82
          G +     +++
Sbjct: 61 GIEFSTYWKNH 71


>gi|156937849|ref|YP_001435645.1| hypothetical protein Igni_1060 [Ignicoccus hospitalis KIN4/I]
 gi|156566833|gb|ABU82238.1| Protein of unknown function DUF655 [Ignicoccus hospitalis KIN4/I]
          Length = 209

 Score = 52.7 bits (125), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            ++L  + GVG      I+EA  +KPF+S ED   R   K     ++E ++ 
Sbjct: 124 LHALELLPGVGRKMLEEILEARKNKPFESFEDLAKRTHLKHPVDVLVERIIK 175


>gi|20090155|ref|NP_616230.1| hypothetical protein MA1291 [Methanosarcina acetivorans C2A]
 gi|19915139|gb|AAM04710.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 218

 Score = 52.7 bits (125), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAIT---DTNNLFSALEFSQKAC 63
          L  H+ +S  +G    + ++         A+AIT   D  NL   LE ++KA 
Sbjct: 7  LHTHTIFS--DGEFLPSELVRHAVLHGYEAVAITDHADHTNLEWLLEAAKKAK 57


>gi|288932584|ref|YP_003436644.1| PHP domain protein [Ferroglobus placidus DSM 10642]
 gi|288894832|gb|ADC66369.1| PHP domain protein [Ferroglobus placidus DSM 10642]
          Length = 206

 Score = 52.7 bits (125), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            L VHS++S  +G  S+  +LD+        I+ITD + +  +LE  +
Sbjct: 3  AELHVHSNHS--DGRDSVKKLLDRALEIGIEVISITDHDTVNGSLEAIE 49


>gi|57233605|ref|YP_182305.1| phosphotransferase domain-containing protein [Dehalococcoides
          ethenogenes 195]
 gi|57224053|gb|AAW39110.1| PHP domain N-terminal region family protein [Dehalococcoides
          ethenogenes 195]
          Length = 287

 Score = 52.7 bits (125), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          V L +H++ S  +G  S  NI+ K A      IAI D +NL   
Sbjct: 5  VDLHIHTTVS--DGVHSPENIVAKAAKVNMEYIAICDHDNLGGV 46


>gi|320161755|ref|YP_004174980.1| hypothetical protein ANT_23540 [Anaerolinea thermophila UNI-1]
 gi|319995609|dbj|BAJ64380.1| hypothetical protein ANT_23540 [Anaerolinea thermophila UNI-1]
          Length = 251

 Score = 52.7 bits (125), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          L +H+ YS  +G  S+  +L  +        IAITD +++  ALE   +A A  ++ I G
Sbjct: 6  LHIHTIYSY-DGTCSVPAVLKHVKTQTLLDVIAITDHDSIRGALEALDRASAYHLEVIPG 64

Query: 73 C 73
          C
Sbjct: 65 C 65


>gi|309389096|gb|ADO76976.1| PHP domain protein [Halanaerobium praevalens DSM 2228]
          Length = 575

 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS+YS  +G  ++  + +         +A+TD 
Sbjct: 346 LHLHSNYS--DGVFTIKEMAEAAKKRNYRYLAVTDH 379


>gi|317060692|ref|ZP_07925177.1| metal-dependent phosphoesterase [Fusobacterium sp. D12]
 gi|313686368|gb|EFS23203.1| metal-dependent phosphoesterase [Fusobacterium sp. D12]
          Length = 280

 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L +HS+ S  +G+ S   ++      +  AIA+TD + +   LE   +A   G++ ++
Sbjct: 11 VDLHIHSTAS--DGSFSPKQVVQLAMMKKMRAIALTDHDTIDGLLEAKCEADKWGLEFVM 68

Query: 72 GCQLDIDMQDN 82
          G +     +++
Sbjct: 69 GIEFSTYWKNH 79


>gi|111222140|ref|YP_712934.1| hypothetical protein FRAAL2718 [Frankia alni ACN14a]
 gi|111149672|emb|CAJ61364.1| conserved hypothetical protein [Frankia alni ACN14a]
          Length = 289

 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 3/75 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-CAAGIQPIIG 72
          L  HSS S  +G +    ++   A      + +TD +      E +        + P   
Sbjct: 9  LHSHSSES--DGTVRPKELVGLAAEAGLKYLGLTDHDTTSGIDEAAGALPRGLTLLPGAE 66

Query: 73 CQLDIDMQDNLKMTN 87
              + + D  +  +
Sbjct: 67 LSCSVTVNDRPRTVH 81


>gi|323705371|ref|ZP_08116946.1| PHP domain protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535273|gb|EGB25049.1| PHP domain protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 271

 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          F  L +H++ S  +G      ++          IAITD + L    E 
Sbjct: 2  FADLHIHTTKS--DGTHKPKEVVHLAKKAGLSIIAITDHDTLEGIDEA 47


>gi|167948891|ref|ZP_02535965.1| DNA polymerase III, alpha subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 78

 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 10/69 (14%)

Query: 56  LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
           ++F Q A   GI+PI G  L +   D++               ++LLV   EGY+ L  L
Sbjct: 1   IKFYQAALGGGIKPIAGTDLWLRNPDDVNK----------PFRLLLLVQNLEGYRNLTRL 50

Query: 116 VSRMYLLDQ 124
           VSR Y   Q
Sbjct: 51  VSRSYREGQ 59


>gi|311279825|ref|YP_003942056.1| PHP domain-containing protein [Enterobacter cloacae SCF1]
 gi|308749020|gb|ADO48772.1| PHP domain protein [Enterobacter cloacae SCF1]
          Length = 293

 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H++ S  +G L+   ++ +  A +   +AITD +++ +      +   AG+ 
Sbjct: 12 LHSHTTAS--DGCLTPEELVHRALAMRVGTLAITDHDSVAAIPAARAEIARAGLP 64


>gi|303240430|ref|ZP_07326947.1| PHP domain protein [Acetivibrio cellulolyticus CD2]
 gi|302591995|gb|EFL61726.1| PHP domain protein [Acetivibrio cellulolyticus CD2]
          Length = 569

 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS+YS  +GA ++  ++          + ITD 
Sbjct: 339 LHVHSTYS--DGANTIEELVKFSMNKGYTYLGITDH 372


>gi|167835341|ref|ZP_02462224.1| error-prone DNA polymerase [Burkholderia thailandensis MSMB43]
          Length = 92

 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             R   +V ++Q   T KG  + +VT  +         
Sbjct: 2    ARACGLVTARQMPGTAKG--VLFVTLEDETGSVNVIV 36


>gi|269125471|ref|YP_003298841.1| PHP domain-containing protein [Thermomonospora curvata DSM 43183]
 gi|268310429|gb|ACY96803.1| PHP domain protein [Thermomonospora curvata DSM 43183]
          Length = 280

 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G     +++ +        +A+TD + +    E + +A  AG+  + G 
Sbjct: 5  LHSHSNAS--DGTQPPADVVRRARRAGLDVLALTDHDTVAGLREAA-EALPAGLTLVPGM 61

Query: 74 QLDIDMQ 80
          +L   + 
Sbjct: 62 ELSCRLG 68


>gi|330817635|ref|YP_004361340.1| PHP-like protein [Burkholderia gladioli BSR3]
 gi|327370028|gb|AEA61384.1| PHP-like protein [Burkholderia gladioli BSR3]
          Length = 276

 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GAL+   +  +  A      A+TD + +   L   + A A G++ + G 
Sbjct: 5  LHCHSNVS--DGALTPAEVAQRAHAAGVTLWALTDHDEVGGQLAAREAAQALGMRYVCGV 62

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 63 EISVTWASR 71


>gi|325479724|gb|EGC82814.1| PHP domain protein [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 278

 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN--NLFSALEFSQKACAAGIQ 68
          +  L  H+++S  +G L + ++L +        +AITD +  N F  ++  +KA   GI+
Sbjct: 5  YADLHSHTNHS--DGLLEIEDVLKRAKDKGVEVLAITDHDTSNHFGEIK--KKAGEIGIK 60

Query: 69 PIIGCQLDIDMQDNLKMTN 87
           +   ++     +  K  +
Sbjct: 61 TLKALEMSCYDYEVDKKVH 79


>gi|332180209|gb|AEE15897.1| PHP domain protein [Treponema brennaborense DSM 12168]
          Length = 284

 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 8/169 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G+L  + ++   AA     +A+TD +      E +  A  A +  + G 
Sbjct: 4   LHTHSTAS--DGSLPPSELISYAAAKGIRVLALTDHDTDSGLTEAADAASRADVTFVPGI 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR-LIELVSRMYLLDQGKQSVRIC 132
           +L++                       ++    EG +    +++ +M           + 
Sbjct: 62  ELNVSWPTGEFHLLGLGLQHTDPALARIIAFLQEGRKNRNSQIIEKMKNDGF-----DVS 116

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
           L+ LQ      +I     +   + +    N  Q  +  L   +  + +R
Sbjct: 117 LTELQSAYPGAIIGRPHIAEYFVRQKICKNRQQAFDTYLGKGRPYYVER 165


>gi|160893296|ref|ZP_02074083.1| hypothetical protein CLOL250_00845 [Clostridium sp. L2-50]
 gi|156864988|gb|EDO58419.1| hypothetical protein CLOL250_00845 [Clostridium sp. L2-50]
          Length = 290

 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           F+ L VH++ S  +G+ + + +          A+AITD + +    E  +        P
Sbjct: 2  RFIDLHVHTTAS--DGSFTPSEVCQMALDKGLAALAITDHDTVDGVPEAIRFMENHQPAP 59


>gi|256752187|ref|ZP_05493052.1| PHP domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748915|gb|EEU61954.1| PHP domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 576

 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH++YS  +GA +L  +++         I ITD 
Sbjct: 340 HVHTTYS--DGANTLVEMVEAARKLGYKYIGITDH 372


>gi|167036645|ref|YP_001664223.1| phosphotransferase domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115072|ref|YP_004185231.1| PHP domain-containing protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166855479|gb|ABY93887.1| PHP C-terminal domain protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319928163|gb|ADV78848.1| PHP domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 576

 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH++YS  +GA +L  +++         I ITD 
Sbjct: 340 HVHTTYS--DGANTLVEMVEAARKLGYKYIGITDH 372


>gi|223984227|ref|ZP_03634374.1| hypothetical protein HOLDEFILI_01667 [Holdemania filiformis DSM
          12042]
 gi|223963796|gb|EEF68161.1| hypothetical protein HOLDEFILI_01667 [Holdemania filiformis DSM
          12042]
          Length = 270

 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          +  L +HS YS  +  ++++ I+++        IA+TD N L  + E  QK    GI+
Sbjct: 2  YADLHIHSWYS--DRTMTVDEIVEQARVRHVSLIAVTDHNQLAGSRECLQKTRGTGIR 57


>gi|30249686|ref|NP_841756.1| phosphotransferase domain-containing protein [Nitrosomonas europaea
           ATCC 19718]
 gi|30180723|emb|CAD85635.1| PHP domain N-terminal region:PHP domain C-terminal region
           [Nitrosomonas europaea ATCC 19718]
          Length = 316

 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 31/186 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS + +L   A      +A+TD +++    E S+ A    I  I G 
Sbjct: 17  LHSHSTIS--DGMLSPSRLLAHAAVRGVNVLALTDHDDIAGLSEASRSAQQENITLIRGV 74

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++ +       +   G    P  P +       EG +++          D      R   
Sbjct: 75  EISVTWHGRT-LHILGLGINPEHPPLT------EGLKKI---------RDGRMDRARAIA 118

Query: 134 SWLQEIGTEG-------------LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
           + L + G  G             LI  T  +   + + +  N   V +K L+  K     
Sbjct: 119 AQLDKFGIHGSFEGASAQAGISRLIGRTHFARFLVSQGYAKNVKSVFKKYLVKGKPGHVS 178

Query: 181 RLYVNL 186
            ++V+L
Sbjct: 179 HVWVSL 184


>gi|261417358|ref|YP_003251041.1| PHP domain protein [Fibrobacter succinogenes subsp. succinogenes
          S85]
 gi|261373814|gb|ACX76559.1| PHP domain protein [Fibrobacter succinogenes subsp. succinogenes
          S85]
 gi|302328090|gb|ADL27291.1| PHP domain protein [Fibrobacter succinogenes subsp. succinogenes
          S85]
          Length = 290

 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 2  TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          +  + ++  +  L +H+  S  +G LS++ +L          I+ITD +NL S     + 
Sbjct: 6  STIITENGGYADLHMHTKLS--DGTLSVDELLMLCKRKGLRCISITDHDNLDSYKLAEEP 63

Query: 62 ACAAGIQPII 71
          A   G++ I 
Sbjct: 64 AKEIGLEIIP 73


>gi|160901964|ref|YP_001567545.1| phosphotransferase domain-containing protein [Petrotoga mobilis
           SJ95]
 gi|160359608|gb|ABX31222.1| PHP domain protein [Petrotoga mobilis SJ95]
          Length = 570

 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH++YS  +GA +L  +++         I ITD 
Sbjct: 340 HVHTNYS--DGANTLTEMVNGARELGYKYIGITDH 372


>gi|167039309|ref|YP_001662294.1| phosphotransferase domain-containing protein [Thermoanaerobacter
           sp. X514]
 gi|300913949|ref|ZP_07131266.1| PHP domain protein [Thermoanaerobacter sp. X561]
 gi|307725366|ref|YP_003905117.1| PHP domain-containing protein [Thermoanaerobacter sp. X513]
 gi|166853549|gb|ABY91958.1| PHP C-terminal domain protein [Thermoanaerobacter sp. X514]
 gi|300890634|gb|EFK85779.1| PHP domain protein [Thermoanaerobacter sp. X561]
 gi|307582427|gb|ADN55826.1| PHP domain protein [Thermoanaerobacter sp. X513]
          Length = 570

 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH++YS  +GA +L  +++         I ITD 
Sbjct: 340 HVHTTYS--DGANTLVEMVEAARKLGYKYIGITDH 372


>gi|163848545|ref|YP_001636589.1| phosphotransferase domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526478|ref|YP_002570949.1| PHP domain-containing protein [Chloroflexus sp. Y-400-fl]
 gi|163669834|gb|ABY36200.1| PHP domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450357|gb|ACM54623.1| PHP domain protein [Chloroflexus sp. Y-400-fl]
          Length = 235

 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 80/256 (31%), Gaps = 54/256 (21%)

Query: 14  LQVHSSYSLLEGALSLNNILDK-IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           L +H++ S  +G  S   +L           IAITD + L  AL   ++A   GI  I+G
Sbjct: 10  LHIHTTAS--DGTASPEAVLSYVATETDLRVIAITDHDTLRGALYARERASHYGIDVIVG 67

Query: 73  CQLDIDMQDNLKMTNQGKTP--------FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           C++       L +  +   P           +     +   A  +  L+  + R +LL  
Sbjct: 68  CEISTRSGHLLALFIEQPVPAGLSVTETVARIHDQGGMAFAAHPFGMLVPSIGRRHLLGP 127

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKKLFGDRL 182
                R  + W+Q  G              +  A  +N  +++ A +    +        
Sbjct: 128 E----RTDVDWMQLDGI------------EVFNASLWNPMNNERAARCAQRW-------- 163

Query: 183 YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA---HSTV 239
              L    G D             H L ++    +LF      +    L   A   H   
Sbjct: 164 --GLTHIGGSD------------AHNLTMIGAGRTLFAGTGAADLRRALQRRATLVHGRY 209

Query: 240 VSQKDRPRVTPDHYLK 255
              +    V  +   +
Sbjct: 210 WGWRGVAGVVRERVWR 225


>gi|302389951|ref|YP_003825772.1| PHP domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302200579|gb|ADL08149.1| PHP domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 572

 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS++S  +G  S+  I  +        +AITD 
Sbjct: 341 LHVHSNWS--DGINSIEEIAIRAREMGYEYVAITDH 374


>gi|296188693|ref|ZP_06857081.1| PHP domain protein [Clostridium carboxidivorans P7]
 gi|296046957|gb|EFG86403.1| PHP domain protein [Clostridium carboxidivorans P7]
          Length = 279

 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +H++ S  +G  S   +++  + +    ++ITD + ++  LE   +    GI+ I 
Sbjct: 8  HLHTTAS--DGKFSPKELVNMASKENIDIMSITDHDTIYGVLEAVLEGKKLGIKVIP 62


>gi|268589489|ref|ZP_06123710.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Providencia
           rettgeri DSM 1131]
 gi|291315157|gb|EFE55610.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Providencia
           rettgeri DSM 1131]
          Length = 299

 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKACAAGIQPII 71
           L  H++ S  +G L+   ++++        +AITD +     LE           I+ + 
Sbjct: 22  LHSHTNAS--DGDLTPAELIERAVEKGVNILAITDHDTCEGVLEARRYLAEHERPIELVN 79

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G      + +N+++   G    P+ P++V L+ T     RL   +     L    Q   I
Sbjct: 80  GV-EISTLWENIEIHIVGLNFSPSHPAMVQLLKTQS-EHRLERGIEMGRRL----QKAGI 133

Query: 132 CLSWLQEIGTEG 143
             +W       G
Sbjct: 134 DDAWENAQRISG 145


>gi|307266741|ref|ZP_07548267.1| PHP domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918232|gb|EFN48480.1| PHP domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 570

 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH++YS  +G  SL +++++        IAITD 
Sbjct: 340 HVHTTYS--DGRNSLVDMVERARKLGYKYIAITDH 372


>gi|171463678|ref|YP_001797791.1| PHP domain protein [Polynucleobacter necessarius subsp.
          necessarius STIR1]
 gi|171193216|gb|ACB44177.1| PHP domain protein [Polynucleobacter necessarius subsp.
          necessarius STIR1]
          Length = 283

 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 8  SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          SP    L  HS  S  +G L+   + ++  A+     A+TD + L         A A  I
Sbjct: 5  SPPNTDLHCHSVIS--DGTLTPEELAERAKANGVHLWALTDHDELGGQKRARAAASALNI 62


>gi|170757413|ref|YP_001780294.1| phosphotransferase domain-containing protein [Clostridium
          botulinum B1 str. Okra]
 gi|169122625|gb|ACA46461.1| PHP domain protein [Clostridium botulinum B1 str. Okra]
          Length = 272

 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +  L VH+++S  +G   + N+LD        AIAITD + +    E S+      ++ +
Sbjct: 3  YADLHVHTNHS--DGICEIANVLDMAKKKGIKAIAITDHDTVDQFDEISELGRKMDLEVV 60

Query: 71 IGCQLDIDMQDNLKMTN 87
           G ++     D  K  +
Sbjct: 61 KGVEMSCYDYDVFKKVH 77


>gi|326390020|ref|ZP_08211582.1| PHP domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325993885|gb|EGD52315.1| PHP domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 570

 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH++YS  +G  SL +++++        IAITD 
Sbjct: 340 HVHTTYS--DGRNSLVDMVERARKLGYKYIAITDH 372


>gi|288935911|ref|YP_003439970.1| PHP domain protein [Klebsiella variicola At-22]
 gi|288890620|gb|ADC58938.1| PHP domain protein [Klebsiella variicola At-22]
          Length = 287

 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 53/123 (43%), Gaps = 8/123 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ-PIIG 72
           L  H++ S  +G L+   ++ +    +   +AITD +++ +     ++   AG+   ++ 
Sbjct: 12  LHSHTTAS--DGRLTPQELVHRAHKMRVGTLAITDHDSVAAIPAAREEIARAGLPLTLVN 69

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                 + +N ++   G       P++  L+   +  ++L     R  ++ +  +  RI 
Sbjct: 70  GVEISTLWENHEIHIVGLNIDIAHPTMTALLEEQKARRQL-----RGQMIAERLEKARIP 124

Query: 133 LSW 135
            +W
Sbjct: 125 GAW 127


>gi|268323179|emb|CBH36767.1| conserved hypothetical protein containing PHP domain [uncultured
          archaeon]
          Length = 220

 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH++YS  +G  S+  I+    A +   IAI D + +  +    +      +  II  
Sbjct: 11 LHVHTNYS-HDGHDSVEKIIASAIAQKLDGIAICDHDTMDGSFAAREYVADNHLDLIIIP 69

Query: 74 QLDID 78
           +++ 
Sbjct: 70 GMEVT 74


>gi|253682289|ref|ZP_04863086.1| PHP domain protein [Clostridium botulinum D str. 1873]
 gi|253562001|gb|EES91453.1| PHP domain protein [Clostridium botulinum D str. 1873]
          Length = 277

 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +H++ S  +G LS   ++     +    I+ITD +N F   E        GI+ I 
Sbjct: 8  HLHTTAS--DGKLSPTELVTLAKENGFDIISITDHDNTFGLEEGISSGTKLGIKIIP 62


>gi|37521617|ref|NP_924994.1| hypothetical protein gll2048 [Gloeobacter violaceus PCC 7421]
 gi|35212615|dbj|BAC89989.1| gll2048 [Gloeobacter violaceus PCC 7421]
          Length = 269

 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          + L  H++ S  +G L+ + ++   AA    A+AITD + L    E  +     G++ I 
Sbjct: 2  IELHCHTTCS--DGTLTPSELVASAAAAGITALAITDHDTLSGWPEAHEACLRHGLELIP 59


>gi|271969052|ref|YP_003343248.1| phosphotransferase domain-containing protein [Streptosporangium
           roseum DSM 43021]
 gi|270512227|gb|ACZ90505.1| phosphotransferase domain-containing protein [Streptosporangium
           roseum DSM 43021]
          Length = 284

 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 68/262 (25%), Gaps = 65/262 (24%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS-------------AL---- 56
           L  HS+ S  +G      + +K AA     +A+TD +                  +    
Sbjct: 5   LHAHSTAS--DGTDPPGELAEKAAAAGLDVVALTDHDTTAGWEAAAAALPAGLTLVRGAE 62

Query: 57  ---EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV------------- 100
               +       G+  +             ++    ++        V             
Sbjct: 63  LSGRWYGAEPTVGLHLLAYLFDPGHGPLAAELARVRRSREQRAERTVALLNDGGIDVTVP 122

Query: 101 ----LLVSTAEG---------YQRLIELVSRMYLLDQGKQSVRICLSWLQEI-------G 140
                      G          + L+E VS  +  +   +  R+  + +           
Sbjct: 123 EIREYAAGGTVGRPHLAQALIRRGLVETVSEAFAPEWLGRRYRLPKADIDAFTAVRLVNE 182

Query: 141 TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV 200
             G+ +L    +    R      + +AE        +  D        H   DR     V
Sbjct: 183 AGGVSVLAHPRAS--SRGHIVPDTLIAELAAAGLWGVEADH-----TDHTADDRAH---V 232

Query: 201 VQLAYTHELPLVATNNSLFLSE 222
            +LA    L +  +++    ++
Sbjct: 233 RRLARDLGLRVTGSSDYHGTNK 254


>gi|189219139|ref|YP_001939780.1| Metal-dependent phosphoesterase (PHP family) [Methylacidiphilum
          infernorum V4]
 gi|189185997|gb|ACD83182.1| Metal-dependent phosphoesterase (PHP family) [Methylacidiphilum
          infernorum V4]
          Length = 268

 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 1/46 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            HS +S  +G      ++           A+TD N       F Q
Sbjct: 39 HCHSRFSA-DGVSEPEEMVRVAKRKGLNGFALTDHNTSAGIDYFEQ 83


>gi|167746151|ref|ZP_02418278.1| hypothetical protein ANACAC_00847 [Anaerostipes caccae DSM 14662]
 gi|167654666|gb|EDR98795.1| hypothetical protein ANACAC_00847 [Anaerostipes caccae DSM 14662]
          Length = 301

 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+  S  +GAL+++ ++ +        IA+TD N+  S           GI  I G 
Sbjct: 5   LHSHTVLS--DGALNVDQLISQAKRVGLDYIAVTDHNSTHSIPAVLALGKELGINVIPGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           +++   + +    +        V  +   +     YQR     +++ + ++  +   I  
Sbjct: 63  EINSVHEASDTKPHLLCYYPADVKKLQRKLDRYLEYQR----QTKLAMYEKLMEDYPITK 118

Query: 134 SWLQEIGT 141
             L E   
Sbjct: 119 EQLFEAAR 126


>gi|331269029|ref|YP_004395521.1| putative metal-dependent phosphoesterase [Clostridium botulinum
          BKT015925]
 gi|329125579|gb|AEB75524.1| Predicted metal-dependent phosphoesterase (PHP family)
          [Clostridium botulinum BKT015925]
          Length = 277

 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +H++ S  +G LS   ++     D    I+ITD +N F   E        GI+ I 
Sbjct: 8  HLHTTAS--DGKLSPTELVTLAKNDGFDIISITDHDNTFGLEEAIVSGTKLGIKIIP 62


>gi|311695115|gb|ADP97988.1| PHP C-terminal domain protein [marine bacterium HP15]
          Length = 284

 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L  HS+ S  +GALS   ++++ A      +A+TD + +
Sbjct: 5  LHCHSTAS--DGALSPAALVERAAGRGVTHLALTDHDTI 41


>gi|330998753|ref|ZP_08322481.1| PHP domain protein [Parasutterella excrementihominis YIT 11859]
 gi|329576250|gb|EGG57766.1| PHP domain protein [Parasutterella excrementihominis YIT 11859]
          Length = 281

 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS++S  +G      ++ +   +    I++TD +           A   G+Q   G 
Sbjct: 9  LHMHSTFS--DGVEEPEELVIRAKNNGVELISLTDHDETGGLERMKAAAAQHGLQFANGV 66

Query: 74 QLDIDMQD 81
          ++  D  +
Sbjct: 67 EISADYGE 74


>gi|325295033|ref|YP_004281547.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM
          11699]
 gi|325065481|gb|ADY73488.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM
          11699]
          Length = 222

 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+ +S  +G L  + ++ +  +    A+AITD 
Sbjct: 4  LHTHTIFS--DGELIPSELVRRAESIGYRALAITDH 37


>gi|283785439|ref|YP_003365304.1| putative phosphoesterase [Citrobacter rodentium ICC168]
 gi|282948893|emb|CBG88495.1| putative phosphoesterase [Citrobacter rodentium ICC168]
          Length = 293

 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 57/172 (33%), Gaps = 21/172 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ-PIIG 72
           L  H++ S  +G L+   ++ + A  +   +AITD +   +    S++   + +   +I 
Sbjct: 12  LHSHTTAS--DGTLTPEALVHRAAEMRVGTLAITDHDTTAAIPAASEEISRSALPLTLIP 69

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                 + +N ++   G       P++                       ++ +   ++ 
Sbjct: 70  GVEISTVWENHEIHIVGLNIDIAHPALRAF---------------LAQQSERRQHRAKLI 114

Query: 133 LSWLQEIGTEGLI--MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
              L++    G     L     G + R  F     V   +  T   +F   L
Sbjct: 115 AERLEKAHIPGAWEGALRLADGGAVTRGHFA-RYLVECGKAATMADIFKKYL 165


>gi|291287365|ref|YP_003504181.1| PHP domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884525|gb|ADD68225.1| PHP domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 276

 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L  HS++S  +G +    ++          +A+TD + +   
Sbjct: 4  LHTHSTFS--DGTMHPEKLVSYAEKRGVEVLALTDHDTVDGL 43


>gi|317473298|ref|ZP_07932593.1| PHP domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899134|gb|EFV21153.1| PHP domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 301

 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+  S  +GAL+++ ++ +        IA+TD N+  S           GI  I G 
Sbjct: 5   LHSHTVLS--DGALNVDQLISQAKRVGLDYIAVTDHNSTHSIPAVLALGKELGINVIPGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           +++   + +    +        V  +   +     YQR     +++ + ++  +   I  
Sbjct: 63  EINSVHEASDTKPHLLCYYPADVKKLQRKLDRYLEYQR----QTKLAMYEKLMEDYPITK 118

Query: 134 SWLQEIGT 141
             L E   
Sbjct: 119 EQLFEAAR 126


>gi|317048306|ref|YP_004115954.1| PHP domain-containing protein [Pantoea sp. At-9b]
 gi|316949923|gb|ADU69398.1| PHP domain protein [Pantoea sp. At-9b]
          Length = 301

 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H+  S  +G L+   ++ +    +   +AITD + +    E  Q A    + 
Sbjct: 19 LHSHTLAS--DGVLTPAALVQRAVEMRVGVLAITDHDTVVGVAEAQQTAAELNLP 71


>gi|238894320|ref|YP_002919054.1| putative enzyme of the trp operon [Klebsiella pneumoniae
          NTUH-K2044]
 gi|238546636|dbj|BAH62987.1| putative enzyme of the trp operon [Klebsiella pneumoniae subsp.
          pneumoniae NTUH-K2044]
          Length = 287

 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H++ S  +G L+   ++ +    +   +AITD +++ +     ++   AG+ 
Sbjct: 12 LHSHTTAS--DGRLTPQELVHRAHEMRVGTLAITDHDSVAAIPAAREEIARAGLP 64


>gi|218699973|ref|YP_002407602.1| hypothetical protein ECIAI39_1602 [Escherichia coli IAI39]
 gi|218369959|emb|CAR17733.1| conserved hypothetical protein [Escherichia coli IAI39]
          Length = 293

 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPRALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 130 AQRLAQGGAVTRGHFARFLVECRKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|83589989|ref|YP_429998.1| PHP-like [Moorella thermoacetica ATCC 39073]
 gi|83572903|gb|ABC19455.1| PHP-like protein [Moorella thermoacetica ATCC 39073]
          Length = 291

 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +  L +H+  S  +G+L+   IL+        A++ TD  +L   ++   +A   G++ +
Sbjct: 3  YADLHIHTLAS--DGSLAPAAILELARQKGLKALSFTDHESLSGYIQVYNQARELGLELL 60

Query: 71 IGCQLDIDMQDN 82
           G ++    +  
Sbjct: 61 PGIEMVTSFRGR 72


>gi|74317546|ref|YP_315286.1| phosphoesterase PHP [Thiobacillus denitrificans ATCC 25259]
 gi|74057041|gb|AAZ97481.1| phosphoesterase PHP [Thiobacillus denitrificans ATCC 25259]
          Length = 287

 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L  HS  S  +G LS   ++ + AA+    +A+TD +++   
Sbjct: 6  LHCHSDVS--DGLLSPAEVVARAAANGVDVLALTDHDDVSGI 45


>gi|310829478|ref|YP_003961835.1| hypothetical protein ELI_3928 [Eubacterium limosum KIST612]
 gi|308741212|gb|ADO38872.1| hypothetical protein ELI_3928 [Eubacterium limosum KIST612]
          Length = 312

 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 48/130 (36%), Gaps = 21/130 (16%)

Query: 5   LEKSPSF-VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FS--A 55
           ++  P++   L  H++ S  +G  +    LD  AA     +AITD + L           
Sbjct: 1   MDYKPNYLCDLHSHTTRS--DGNDTPKEFLDTAAALGMKVVAITDHDVLPPEKIEVGGLM 58

Query: 56  LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA-------EG 108
           ++  + A   G++ + G +   + +            + +   +              + 
Sbjct: 59  VDVERYAQKKGMKVLKGIEFSCETEVEDVHLVAFGCDYSSPEIL---AMNRIIVQSKIDS 115

Query: 109 YQRLIELVSR 118
           Y+RL EL++ 
Sbjct: 116 YRRLTELLTE 125


>gi|330002628|ref|ZP_08304383.1| PHP domain protein [Klebsiella sp. MS 92-3]
 gi|328537248|gb|EGF63509.1| PHP domain protein [Klebsiella sp. MS 92-3]
          Length = 287

 Score = 51.9 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H++ S  +G L+   ++ +    +   +AITD +++ +     ++   AG+ 
Sbjct: 12 LHSHTTAS--DGRLTPQELVHRAHEMRVGTLAITDHDSVAAIPAAREEIARAGLP 64


>gi|168178032|ref|ZP_02612696.1| PHP domain protein [Clostridium botulinum NCTC 2916]
 gi|182670378|gb|EDT82352.1| PHP domain protein [Clostridium botulinum NCTC 2916]
          Length = 272

 Score = 51.9 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +  L VH+++S  +G   + N+LD        AIAITD + +    E S+      ++ +
Sbjct: 3  YADLHVHTNHS--DGICEIANVLDMAKKKGIKAIAITDHDTVDQFDEISELGRKMDLEVV 60

Query: 71 IGCQLDIDMQDNLKMTN 87
           G ++     D  K  +
Sbjct: 61 KGVEMSCYDYDVFKKVH 77


>gi|262043012|ref|ZP_06016155.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
          13884]
 gi|259039614|gb|EEW40742.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
          13884]
          Length = 287

 Score = 51.9 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H++ S  +G L+   ++ +    +   +AITD +++ +     ++   AG+ 
Sbjct: 12 LHSHTTAS--DGRLTPQELVHRAHEMRVGTLAITDHDSVAAIPAAREEIARAGLP 64


>gi|153001237|ref|YP_001366918.1| phosphotransferase domain-containing protein [Shewanella baltica
           OS185]
 gi|151365855|gb|ABS08855.1| PHP domain protein [Shewanella baltica OS185]
          Length = 302

 Score = 51.9 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 13/155 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL--EFSQKACAAGIQPII 71
           L  H++ S  +G L+ + ++ +         AITD + +           + A  ++ I 
Sbjct: 26  LHSHTTAS--DGQLTPSELVARALEKGVQLFAITDHDTVAGLPEARAFNLSQAEPLKLIS 83

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++         +           P+++  +      + L EL  R   +        I
Sbjct: 84  GVEISTRWNS-YDIHIVALNFDADNPALLAFLENQ---RELREL--RAQEIGHRLAKAGI 137

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
             ++       G   L+    G   R    N   V
Sbjct: 138 EGAYEGAKALAGEAALS---RGHYARWMAENGHAV 169


>gi|169235729|ref|YP_001688929.1| phosphotransferase domain-containing protein [Halobacterium
          salinarum R1]
 gi|167726795|emb|CAP13581.1| PHP domain protein [Halobacterium salinarum R1]
          Length = 227

 Score = 51.9 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS  S  +G   +  +L++  A    A+A+TD + + ++L  ++ A    +  I 
Sbjct: 4  VELHAHSERSY-DGRDPVEMLLEQAQAVGLDALAVTDHDEIDASLRAAELAADYDLVGIP 62

Query: 72 GCQLDIDMQDNLKMTNQGKTP 92
          G ++       L +  +   P
Sbjct: 63 GMEVTSADGHVLAIGVERAVP 83


>gi|331007377|ref|ZP_08330566.1| hypothetical protein IMCC1989_1395 [gamma proteobacterium
          IMCC1989]
 gi|330418811|gb|EGG93288.1| hypothetical protein IMCC1989_1395 [gamma proteobacterium
          IMCC1989]
          Length = 293

 Score = 51.9 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L  HS  S  +G LS  +++          +A+TD + L   
Sbjct: 4  LHTHSHCS--DGYLSPQDLVALAKQQGVSVLALTDHDTLEGI 43


>gi|158521514|ref|YP_001529384.1| phosphotransferase domain-containing protein [Desulfococcus
           oleovorans Hxd3]
 gi|158510340|gb|ABW67307.1| PHP domain protein [Desulfococcus oleovorans Hxd3]
          Length = 294

 Score = 51.9 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 80/219 (36%), Gaps = 22/219 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VHS+ S  +G L+   I+ K       A++ITD + +       + A  A ++ + G 
Sbjct: 11  LHVHSTAS--DGTLTPLEIVKKSEQAGLAALSITDHDTVAGCRPVLEAALPASLKFLTGV 68

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++      +  ++  G          +   +   G +RL           + +++ +I  
Sbjct: 69  EISAAYPASCSLS--GSLHVLGYDIDIHDTALNHGLERL--------QTARNQRTPKI-- 116

Query: 134 SWLQEIGTEGLIMLTGGSS-----GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             L+++   G+ +    ++     G + RA    +   A   + + ++ F   L  N   
Sbjct: 117 --LEQLNRLGMDISMAETAAFAGGGQVGRAHIAQAM-KARGVVRSIREAFDRYLGKNKPA 173

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
           +   +R    + + L        V  +  L  + +D   
Sbjct: 174 YVDKERIPCDRAIALIRQAGGVAVLAHPFLVDTPDDKAL 212


>gi|161869394|ref|YP_001598561.1| hypothetical protein NMCC_0401 [Neisseria meningitidis 053442]
 gi|161594947|gb|ABX72607.1| conserved hypothetical protein [Neisseria meningitidis 053442]
          Length = 278

 Score = 51.9 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A    ++ I G 
Sbjct: 4   LHCHSTVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLDLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +  +                    LL    +G  RL  L +    L++
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQG--RLKRLEAIAAKLEK 110


>gi|152969812|ref|YP_001334921.1| putative enzyme [Klebsiella pneumoniae subsp. pneumoniae MGH
          78578]
 gi|150954661|gb|ABR76691.1| putative enzyme [Klebsiella pneumoniae subsp. pneumoniae MGH
          78578]
          Length = 280

 Score = 51.9 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H++ S  +G L+   ++ +    +   +AITD +++ +     ++   AG+ 
Sbjct: 5  LHSHTTAS--DGRLTPQELVHRAHEMRVGTLAITDHDSVAAIPAAREEIARAGLP 57


>gi|20092421|ref|NP_618496.1| hypothetical protein MA3621 [Methanosarcina acetivorans C2A]
 gi|19917677|gb|AAM06976.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 224

 Score = 51.9 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L VHS YS  +   S  +IL+          AI D + +   L  ++KA   G++
Sbjct: 5  LHVHSEYS-RDSESSHEDILENALKRGLDGFAICDHDTVEGGLACAKKALELGLE 58


>gi|319639394|ref|ZP_07994144.1| hypothetical protein HMPREF0604_01768 [Neisseria mucosa C102]
 gi|317399289|gb|EFV79960.1| hypothetical protein HMPREF0604_01768 [Neisseria mucosa C102]
          Length = 278

 Score = 51.9 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A   G+  I G 
Sbjct: 4   LHCHSTVS--DGMLSPTEVVRLARQNGCTLLALTDHDHTGGLAEARAEADTLGLPFINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +  +                    LL    +G  RL  L +    L++
Sbjct: 62  EISVTWRGRTIHVVGLDFDEHNETLQNLLAEVRKG--RLKRLEAIAAKLEK 110


>gi|254468369|ref|ZP_05081775.1| hypothetical protein KB13_594 [beta proteobacterium KB13]
 gi|207087179|gb|EDZ64462.1| hypothetical protein KB13_594 [beta proteobacterium KB13]
          Length = 279

 Score = 51.9 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +G L+ + ++   A  +   +A+TD +++       +K+   GIQ I 
Sbjct: 4  VDLHSHSNVS--DGILNPDELITYAAEKKVNMLALTDHDDIAGLEIAKKKSVELGIQFIN 61

Query: 72 GCQLDIDMQDN 82
          G ++ +  ++ 
Sbjct: 62 GVEISVSWRNR 72


>gi|217972842|ref|YP_002357593.1| PHP domain-containing protein [Shewanella baltica OS223]
 gi|217497977|gb|ACK46170.1| PHP domain protein [Shewanella baltica OS223]
          Length = 286

 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 13/155 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL--EFSQKACAAGIQPII 71
           L  H++ S  +G L+ + ++ +         AITD + +           + A  ++ I 
Sbjct: 10  LHSHTTAS--DGQLTPSELVARALEKGVQLFAITDHDTVAGLPEARAFNLSQAEPLKLIS 67

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++         +           P+++  +      + L EL  R   +        I
Sbjct: 68  GVEISTRWNS-YDIHIVALNFDADNPALLAFLENQ---RELREL--RAQEIGHRLAKAGI 121

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
             ++       G   L+    G   R    N   V
Sbjct: 122 EGAYEGAKALAGEAALS---RGHYARWMAENGHAV 153


>gi|313904658|ref|ZP_07838032.1| histidinol phosphate phosphatase HisJ family [Eubacterium
          cellulosolvens 6]
 gi|313470451|gb|EFR65779.1| histidinol phosphate phosphatase HisJ family [Eubacterium
          cellulosolvens 6]
          Length = 266

 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
            H+ YS  +G      +  +        +A TD  ++F
Sbjct: 7  HTHTHYSF-DGMGDPEEMCRRAVELGLQELAFTDHMDIF 44


>gi|304411910|ref|ZP_07393521.1| PHP domain protein [Shewanella baltica OS183]
 gi|307303322|ref|ZP_07583077.1| PHP domain protein [Shewanella baltica BA175]
 gi|304349770|gb|EFM14177.1| PHP domain protein [Shewanella baltica OS183]
 gi|306913682|gb|EFN44104.1| PHP domain protein [Shewanella baltica BA175]
          Length = 302

 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 13/155 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL--EFSQKACAAGIQPII 71
           L  H++ S  +G L+ + ++ +         AITD + +           + A  ++ I 
Sbjct: 26  LHSHTTAS--DGQLTPSELVARALEKGVQLFAITDHDTVAGLPEARAFNLSQAEPLKLIS 83

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++         +           P+++  +      + L EL  R   +        I
Sbjct: 84  GVEISTRWNS-YDIHIVALNFDADNPALLAFLENQ---RELREL--RAQEIGHRLAKAGI 137

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
             ++       G   L+    G   R    N   V
Sbjct: 138 EGAYEGAKALAGEAALS---RGHYARWMAENGHAV 169


>gi|300711015|ref|YP_003736829.1| PHP domain protein [Halalkalicoccus jeotgali B3]
 gi|299124698|gb|ADJ15037.1| PHP domain protein [Halalkalicoccus jeotgali B3]
          Length = 229

 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +G   ++ +L++ +A    AIAITD +   ++ E ++ A   G+  I 
Sbjct: 4  VELHAHSALS-HDGRDPVDFLLEQASAVGLDAIAITDHDAFEASREAARLAPEYGLVGIP 62


>gi|91793801|ref|YP_563452.1| PHP-like protein [Shewanella denitrificans OS217]
 gi|91715803|gb|ABE55729.1| PHP-like protein [Shewanella denitrificans OS217]
          Length = 286

 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          L  H++ S  +G LS  +++ +         AITD + L    E  Q
Sbjct: 10 LHSHTTAS--DGQLSPTDLVARALDKGVQMFAITDHDTLAGLDEAHQ 54


>gi|225388551|ref|ZP_03758275.1| hypothetical protein CLOSTASPAR_02287 [Clostridium asparagiforme
           DSM 15981]
 gi|225045396|gb|EEG55642.1| hypothetical protein CLOSTASPAR_02287 [Clostridium asparagiforme
           DSM 15981]
          Length = 146

 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 42/139 (30%), Gaps = 14/139 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-NLF-SALEFSQKACAAGIQPII 71
           L  H+S S      SL+ +    A     AI ITD    +   A+           + + 
Sbjct: 8   LHTHTSVS-QHAYSSLDEMARSAAELGLAAIGITDHGPGMMDGAIRHHFYCMRGLPKAVH 66

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L    + N+K  + G      V   +  V     Y   +E +         +     
Sbjct: 67  GLRLVTGAEVNIKDFDGGLDLDRDVLRQLDFV--VASYH--VEAIDPAASEQHTRG---- 118

Query: 132 CLSWLQEIGTEGLIMLTGG 150
              WL  I    +  L   
Sbjct: 119 ---WLNVIANPDVDCLGHC 134


>gi|160875911|ref|YP_001555227.1| phosphotransferase domain-containing protein [Shewanella baltica
           OS195]
 gi|160861433|gb|ABX49967.1| PHP domain protein [Shewanella baltica OS195]
          Length = 302

 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 13/155 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL--EFSQKACAAGIQPII 71
           L  H++ S  +G L+ + ++ +         AITD + +           + A  ++ I 
Sbjct: 26  LHSHTTAS--DGQLTPSELVARALEKGVQLFAITDHDTVAGLPEARAFNLSQAEPLKLIS 83

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++         +           P+++  +      + L EL  R   +        I
Sbjct: 84  GVEISTRWNS-YDIHIVALNFDADNPALLAFLENQ---RELREL--RAQEIGHRLAKAGI 137

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
             ++       G   L+    G   R    N   V
Sbjct: 138 EGAYEGAKALAGEAALS---RGHYARWMAENGHAV 169


>gi|149195655|ref|ZP_01872712.1| PHP-like protein [Lentisphaera araneosa HTCC2155]
 gi|149141117|gb|EDM29513.1| PHP-like protein [Lentisphaera araneosa HTCC2155]
          Length = 282

 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +G L+   + + ++       ++TD +      E +  A   G+Q I 
Sbjct: 7  VDLHCHSNIS--DGKLTPVELTELMSQQGVKLFSLTDHDTTAGCKEAADHAKKLGLQFIP 64

Query: 72 GCQLDIDMQDN 82
          G ++  D  D 
Sbjct: 65 GVEVSSDFNDK 75


>gi|111225427|ref|YP_716221.1| hypothetical protein FRAAL6083 [Frankia alni ACN14a]
 gi|111152959|emb|CAJ64707.1| Conserved hypothetical protein [Frankia alni ACN14a]
          Length = 300

 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  HS+ S  +G +S  +++   A      IA+TD + 
Sbjct: 17 LHTHSTAS--DGLVSPEDLVRLAAESGLSVIALTDHDT 52


>gi|168187863|ref|ZP_02622498.1| PHP domain protein [Clostridium botulinum C str. Eklund]
 gi|169294300|gb|EDS76433.1| PHP domain protein [Clostridium botulinum C str. Eklund]
          Length = 277

 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           +H++ S  +G LS + +++         IAITD +N F   E        G++
Sbjct: 8  HLHTTAS--DGKLSPSELVNLAKKQAFDIIAITDHDNTFGLKEGISTGKEIGVK 59


>gi|59800542|ref|YP_207254.1| hypothetical protein NGO0081 [Neisseria gonorrhoeae FA 1090]
 gi|239998213|ref|ZP_04718137.1| hypothetical protein Ngon3_01837 [Neisseria gonorrhoeae 35/02]
 gi|240013396|ref|ZP_04720309.1| hypothetical protein NgonD_01889 [Neisseria gonorrhoeae DGI18]
 gi|240112185|ref|ZP_04726675.1| hypothetical protein NgonM_01139 [Neisseria gonorrhoeae MS11]
 gi|240120467|ref|ZP_04733429.1| hypothetical protein NgonPI_01574 [Neisseria gonorrhoeae PID24-1]
 gi|254492991|ref|ZP_05106162.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|260441255|ref|ZP_05795071.1| hypothetical protein NgonDG_09263 [Neisseria gonorrhoeae DGI2]
 gi|268594068|ref|ZP_06128235.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268598245|ref|ZP_06132412.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|291044600|ref|ZP_06570309.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|59717437|gb|AAW88842.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|226512031|gb|EEH61376.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268547457|gb|EEZ42875.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268582376|gb|EEZ47052.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|291011494|gb|EFE03490.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|317163501|gb|ADV07042.1| hypothetical protein NGTW08_0064 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 278

 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L    ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSTVS--DGMLPPAEVVRLAHQNGCTLLALTDHDHTGGISEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +  +                    LL    +G  RL  L +    L++
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLADVRKG--RLKRLEAIAAKLEK 110


>gi|114566774|ref|YP_753928.1| PHP family metal-dependent phosphoesterase [Syntrophomonas wolfei
          subsp. wolfei str. Goettingen]
 gi|114337709|gb|ABI68557.1| metal-dependent phosphoesterases (PHP family) [Syntrophomonas
          wolfei subsp. wolfei str. Goettingen]
          Length = 284

 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQK 61
          L  H+S S  +G LS   ++ +      P +AITD + +     A  F ++
Sbjct: 5  LHTHTSAS--DGLLSPGEVISQAKDIGLPGLAITDHDTVDGLEEARRFIEE 53


>gi|256018488|ref|ZP_05432353.1| hypothetical protein ShiD9_06207 [Shigella sp. D9]
 gi|332101896|gb|EGJ05242.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 293

 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 78/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ           V +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKVQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 130 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLAALARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|196230412|ref|ZP_03129274.1| PHP domain protein [Chthoniobacter flavus Ellin428]
 gi|196225342|gb|EDY19850.1| PHP domain protein [Chthoniobacter flavus Ellin428]
          Length = 238

 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  HS YS  +G  S  +++           A+TD N 
Sbjct: 7  LHCHSWYS-GDGVSSPESLIASARKKGLHGFALTDHNT 43


>gi|194097703|ref|YP_002000744.1| hypothetical protein NGK_0119 [Neisseria gonorrhoeae NCCP11945]
 gi|240015838|ref|ZP_04722378.1| hypothetical protein NgonFA_01507 [Neisseria gonorrhoeae FA6140]
 gi|240079978|ref|ZP_04724521.1| hypothetical protein NgonF_01490 [Neisseria gonorrhoeae FA19]
 gi|240114930|ref|ZP_04728992.1| hypothetical protein NgonPID1_01527 [Neisseria gonorrhoeae PID18]
 gi|240117218|ref|ZP_04731280.1| hypothetical protein NgonPID_01944 [Neisseria gonorrhoeae PID1]
 gi|240122768|ref|ZP_04735724.1| hypothetical protein NgonP_02275 [Neisseria gonorrhoeae PID332]
 gi|240124961|ref|ZP_04737847.1| hypothetical protein NgonSK_01839 [Neisseria gonorrhoeae SK-92-679]
 gi|268596118|ref|ZP_06130285.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268600590|ref|ZP_06134757.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268602907|ref|ZP_06137074.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268681374|ref|ZP_06148236.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268683542|ref|ZP_06150404.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|193932993|gb|ACF28817.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|268549906|gb|EEZ44925.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268584721|gb|EEZ49397.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268587038|gb|EEZ51714.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268621658|gb|EEZ54058.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268623826|gb|EEZ56226.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
          Length = 278

 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L    ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSTVS--DGMLPPAEVVRLAHQNGCTLLALTDHDHTGGISEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +  +                    LL    +G  RL  L +    L++
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLADVRKG--RLKRLEAIAAKLEK 110


>gi|323185575|gb|EFZ70936.1| PHP domain protein [Escherichia coli 1357]
          Length = 286

 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 78/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 5   LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 62

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ           V +    EG
Sbjct: 63  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKVQIPGALEG 122

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 123 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 182

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 183 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLAALARQH 239

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 240 HLWASQGSDFHQPCPW 255


>gi|284162331|ref|YP_003400954.1| PHP domain protein [Archaeoglobus profundus DSM 5631]
 gi|284012328|gb|ADB58281.1| PHP domain protein [Archaeoglobus profundus DSM 5631]
          Length = 213

 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L VHS +S  +G L  + I+ + A      +AITD 
Sbjct: 4  LHVHSVFS--DGELIPSEIVRRCAEIGYEGVAITDH 37


>gi|238062527|ref|ZP_04607236.1| phosphotransferase [Micromonospora sp. ATCC 39149]
 gi|237884338|gb|EEP73166.1| phosphotransferase [Micromonospora sp. ATCC 39149]
          Length = 288

 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L  HS+ S  +G L+   ++   A      +AITD +    
Sbjct: 9  LHAHSTAS--DGTLTPAELVRAAADAGLDVLAITDHDTTAG 47


>gi|121536009|ref|ZP_01667799.1| PHP C-terminal domain protein [Thermosinus carboxydivorans Nor1]
 gi|121305399|gb|EAX46351.1| PHP C-terminal domain protein [Thermosinus carboxydivorans Nor1]
          Length = 275

 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 4/119 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H++ S  +G L+   ++++        IAITD + +   L+   +    G++ I G 
Sbjct: 5   LHIHTTAS--DGRLNPGEVVEQAVQAGLNCIAITDHDTVDG-LKILMEENKEGLRIIPGI 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ-RLIELVSRMYLLDQGKQSVRI 131
           +   D+  +          +        L   A G Q RL  +V ++  L       R+
Sbjct: 62  EFSTDLPQHEVHILGYYIDWCEDELCSCLERLAAGRQTRLRLMVDKINRLGYKIDYERV 120


>gi|291085289|ref|ZP_06352648.2| PHP domain protein [Citrobacter youngae ATCC 29220]
 gi|291071512|gb|EFE09621.1| PHP domain protein [Citrobacter youngae ATCC 29220]
          Length = 296

 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 18/150 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++ S  +G L+   ++ +    +   +AITD +         ++   +G+   +  
Sbjct: 16  LHSHTTAS--DGRLTPEALVHRAVEMRVGTLAITDHDTTAGIAAAREEISRSGLALNLIS 73

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++I         +           ++             E +++    ++ +Q  R+  
Sbjct: 74  GVEISTVWENHEIHIVGLNIDIAHPLM------------CEFLTQ--QTERRQQRARLIA 119

Query: 134 SWLQEIGTEGLI--MLTGGSSGPIDRAFFF 161
             L++    G     L     G + R  F 
Sbjct: 120 ERLEKAHIPGAWEGALRLADGGAVTRGHFA 149


>gi|50545509|ref|XP_500292.1| YALI0A20548p [Yarrowia lipolytica]
 gi|49646157|emb|CAG84230.1| YALI0A20548p [Yarrowia lipolytica]
          Length = 419

 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           +P ++    H+++S  +G+L+ + ++D   A    AI +TD NN+  
Sbjct: 103 TPIYLETHSHTNHS--DGSLTPSQLVDWAQAYGLTAICVTDHNNIEG 147


>gi|32471446|ref|NP_864439.1| DNA polymerase beta family protein [Rhodopirellula baltica SH 1]
 gi|32443287|emb|CAD72118.1| DNA polymerase beta family [Rhodopirellula baltica SH 1]
          Length = 589

 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 68/237 (28%), Gaps = 29/237 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALEFSQKACA----AG 66
           L +H+  S  +G  ++  + D         IAITD +    +   L+  +          
Sbjct: 355 LHMHT--SATDGQNTIAEMADAAIERGLKYIAITDHSKRVTMAGGLDAERLLKQWEIIDE 412

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           I+P    +L I       +   G    P  V      +  +  Y              Q 
Sbjct: 413 IRPKYEGRLVILKGIECDILEAGGMDLPDEVLEQGDWILGSVHY-------------GQK 459

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
           +   +I    L  I    +  +   +   ++R   ++    A  +         +  ++ 
Sbjct: 460 QPRDQITDRILGAIENPHVDCIAHPTGRILNRREAYDVDMDAVMQAAK-----ENNKFLE 514

Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           L  +       +  +   A    +P+V   ++          + +  A       + 
Sbjct: 515 LNANPARLDLNDVHLSA-AKKRGIPIVINTDAHVTDGLWVMRYGIRQARRGGLTAAD 570


>gi|315923983|ref|ZP_07920211.1| PHP family histidinol phosphatase/hydrolase [Pseudoramibacter
          alactolyticus ATCC 23263]
 gi|315622823|gb|EFV02776.1| PHP family histidinol phosphatase/hydrolase [Pseudoramibacter
          alactolyticus ATCC 23263]
          Length = 256

 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LFSA-LEFSQKACA 64
          L  H+++S   G  ++  ++D+  A +  AIAI+D      L+       +K  A
Sbjct: 7  LHTHTTFS--HGRNTIEEMVDRARALELAAIAISDHGRSHPLYGVKPRHFRKMRA 59


>gi|302348322|ref|YP_003815960.1| hypothetical protein ASAC_0522 [Acidilobus saccharovorans 345-15]
 gi|302328734|gb|ADL18929.1| hypothetical protein ASAC_0522 [Acidilobus saccharovorans 345-15]
          Length = 229

 Score = 51.5 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            L  HS  S  +G  +   ++ + A     A+A++D N    +      A    +
Sbjct: 8  AELHSHSRAS--DGKPTPEEVVIRAAQLGLSAVALSDHNTFRGSALAQASAKELDL 61


>gi|269925521|ref|YP_003322144.1| PHP domain protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269789181|gb|ACZ41322.1| PHP domain protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 225

 Score = 51.5 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            L  H+S+S  +  +  + ++          +AITD N +  A E +  A
Sbjct: 9  AELHCHTSWS-RDCLMRPDRLVQVCIEKGIEVLAITDHNEIGGAFEVASIA 58


>gi|254519099|ref|ZP_05131155.1| metal-dependent phosphoesterase [Clostridium sp. 7_2_43FAA]
 gi|226912848|gb|EEH98049.1| metal-dependent phosphoesterase [Clostridium sp. 7_2_43FAA]
          Length = 291

 Score = 51.5 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS +S  +G  +   I+D+   +    I+I+D N++ +       +    I+ I G 
Sbjct: 6  LHMHSCFSD-DGEYTPEEIVDRAMKNNVEIISISDHNSVKAVERALNYSRDKDIKVIPGI 64

Query: 74 QLDIDMQD 81
          ++D    D
Sbjct: 65 EIDCTFND 72


>gi|261402960|ref|YP_003247184.1| PHP domain protein [Methanocaldococcus vulcanius M7]
 gi|261369953|gb|ACX72702.1| PHP domain protein [Methanocaldococcus vulcanius M7]
          Length = 292

 Score = 51.5 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 9/77 (11%)

Query: 14 LQVHSSYS---------LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          L +H+ YS           +       IL          +AITD N +   +E  +    
Sbjct: 5  LHIHTKYSGIGRFWKLKFPDSVEEPKCILKMAKKRGIDIVAITDHNTIRGGIEAKKIEKE 64

Query: 65 AGIQPIIGCQLDIDMQD 81
           G++ IIG ++     +
Sbjct: 65 FGVEVIIGSEIMTSQGE 81


>gi|152981327|ref|YP_001352967.1| hypothetical protein mma_1277 [Janthinobacterium sp. Marseille]
 gi|151281404|gb|ABR89814.1| Uncharacterized conserved protein [Janthinobacterium sp.
          Marseille]
          Length = 278

 Score = 51.5 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L  HS++S  +G L+   +  +  A+     A+TD + +   
Sbjct: 6  LHCHSNFS--DGTLTPTALAARAKANGVDVWAMTDHDEVGGL 45


>gi|119775263|ref|YP_928003.1| PHP-like protein [Shewanella amazonensis SB2B]
 gi|119767763|gb|ABM00334.1| PHP-like protein [Shewanella amazonensis SB2B]
          Length = 286

 Score = 51.5 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
          V L  H++ S  +G LS ++++ +        +AITD + L    E  
Sbjct: 8  VDLHCHTTAS--DGQLSPSDVVTRAIERGVNLLAITDHDTLDGLEEAH 53


>gi|289578362|ref|YP_003476989.1| PHP domain protein [Thermoanaerobacter italicus Ab9]
 gi|289528075|gb|ADD02427.1| PHP domain protein [Thermoanaerobacter italicus Ab9]
          Length = 278

 Score = 51.5 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F  L +HS  S  +G  S + ++          I++TD + +    E    +    I+ I
Sbjct: 2  FADLHMHSKAS--DGTNSPSEVVRLAKEHGLSCISLTDHDTIDGLEEAVWISFKYEIEVI 59

Query: 71 IGCQLDIDMQD 81
           G + +   Q+
Sbjct: 60 PGIEFNCYYQN 70


>gi|218549043|ref|YP_002382834.1| hypothetical protein EFER_1691 [Escherichia fergusonii ATCC 35469]
 gi|218356584|emb|CAQ89207.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469]
          Length = 293

 Score = 51.5 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 78/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAKLIAERLEKSQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL++   V+R +                         ++  +   W        +I  
Sbjct: 130 AQRLVQGGAVTRGHFARFLVECGKASSIADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|297617350|ref|YP_003702509.1| PHP domain protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145187|gb|ADI01944.1| PHP domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 290

 Score = 51.5 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 61/163 (37%), Gaps = 6/163 (3%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S  +GA S   ++ + AA     I+  D  ++    +  + A   G++ I 
Sbjct: 6   VDLHLHTTAS--DGATSALELVHQAAAMGLKTISFCDHESIEGYKQALETAEELGLELIP 63

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G    + M +  ++   G    P  P +   +      +    +++   +    K    I
Sbjct: 64  GV-ELLTMHEGREIHLLGYYVDPDSPVLNSWLKELREDRN---VIAEQMVDKFNKHGYDI 119

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
               ++EI T+ + +        +  A + N+       L  +
Sbjct: 120 KFERVKEIATDNVAIGKNHFLFALIEAGYINTKDEIIHILRDY 162


>gi|289578765|ref|YP_003477392.1| PHP domain protein [Thermoanaerobacter italicus Ab9]
 gi|289528478|gb|ADD02830.1| PHP domain protein [Thermoanaerobacter italicus Ab9]
          Length = 337

 Score = 51.5 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 20/120 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LF--------SALEFSQKA 62
           L  H+++S  +G  S   ++   A      +AITD +    L+        S  EF   A
Sbjct: 30  LHCHTTHS--DGNDSPEELIINAAKSGLKVVAITDHDVPPPLYLDTPQGRISVKEF---A 84

Query: 63  CAAGIQPI----IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
              G++ +      C   +D    L      + P        +  S  E Y++L E+++ 
Sbjct: 85  HQHGVEIVLGIEFSCDTYVDDVHILGYRMDWENPLLAEAVERMRRSKTEAYRKLCEILTA 144


>gi|315268102|gb|ADT94955.1| PHP domain protein [Shewanella baltica OS678]
          Length = 286

 Score = 51.5 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 13/155 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL--EFSQKACAAGIQPII 71
           L  H++ S  +G L+ + ++ +         AITD + +           + A  ++ I 
Sbjct: 10  LHSHTTAS--DGQLTPSELVARALEKGVQLFAITDHDTVAGLPEARAFNLSQAEPLKLIS 67

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++         +           P+++  +      + L EL  R   +        I
Sbjct: 68  GVEISTRWNS-YDIHIVALNFDADNPALLAFLENQ---RELREL--RAQEIGHRLAKAGI 121

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
             ++       G   L+    G   R    N   V
Sbjct: 122 EGAYEGAKALAGEAALS---RGHYARWMAENGHAV 153


>gi|308389925|gb|ADO32245.1| hypothetical protein NMBB_2081 [Neisseria meningitidis alpha710]
          Length = 278

 Score = 51.5 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A    ++ I G 
Sbjct: 4   LHCHSTVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLDLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +  +                    LL    +G  RL  L +    L++
Sbjct: 62  EISVTWRGRTIHVVGLDFDERDENLQNLLAQVRQG--RLKRLEAIAAKLEK 110


>gi|301119415|ref|XP_002907435.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262105947|gb|EEY63999.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 318

 Score = 51.1 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 59/185 (31%), Gaps = 17/185 (9%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +HS  S  +G    + ++ K AA+    +++TD + +    E    A   G+       
Sbjct: 84  HLHSICS--DGKFKPSGVIAKAAANGVTFMSLTDHDTMAGVSEAIAAAQKLGV------- 134

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV---RI 131
             +     +    +G      +       ++AE  ++L+++ +  +   +G        I
Sbjct: 135 -LVFPGVEISAEVKGGENLHILGYFYPGSNSAELEKQLLKIRTGRHKRGKGMLKKLEMGI 193

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
            L W + +     I        P        +  VA  R    + L  D        H  
Sbjct: 194 KLEWERVLE----IAGEAAPGRPHVAEALVEAGHVANFRQAFARYLHNDGPAYVEGEHFP 249

Query: 192 YDRYR 196
            +   
Sbjct: 250 PEEAI 254


>gi|330445590|ref|ZP_08309242.1| PHP domain protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489781|dbj|GAA03739.1| PHP domain protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 296

 Score = 51.1 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 42/116 (36%), Gaps = 4/116 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ-PIIG 72
           L  H++ S  +G L+   ++ +    +   +AITD + +    E         +   +I 
Sbjct: 5   LHSHTTAS--DGRLTPQELVRRAVDMRVDILAITDHDTVAGLHEAHSVIEQEDLPITLIN 62

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                 +  N  +   G    P  P+++  +   +  +RL         L++ +  
Sbjct: 63  GIEISTVWQNFDIHIVGLNIDPHNPALLSFIE-EQAERRLARAKEIGARLEKNRMP 117


>gi|303243512|ref|ZP_07329854.1| PHP domain protein [Methanothermococcus okinawensis IH1]
 gi|302486073|gb|EFL48995.1| PHP domain protein [Methanothermococcus okinawensis IH1]
          Length = 222

 Score = 51.1 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
            H+ +S  +G L  + ++ +       AIAITD  
Sbjct: 8  HTHTVFS--DGELIPSELVRRAKVLNHKAIAITDHG 41


>gi|325201530|gb|ADY96984.1| PHP domain protein [Neisseria meningitidis M01-240149]
 gi|325207509|gb|ADZ02961.1| PHP domain protein [Neisseria meningitidis NZ-05/33]
          Length = 278

 Score = 51.1 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A    ++ I G 
Sbjct: 4   LHCHSTVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLDLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           ++ +  +                    LL    +G  RL  L +    L++
Sbjct: 62  EISVTWRGRTIHVVGLDFDERDENLQNLLAQVRQG--RLKRLEAIAAKLEK 110


>gi|262199755|ref|YP_003270964.1| DNA-directed DNA polymerase [Haliangium ochraceum DSM 14365]
 gi|262083102|gb|ACY19071.1| DNA-directed DNA polymerase [Haliangium ochraceum DSM 14365]
          Length = 586

 Score = 51.1 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 80/262 (30%), Gaps = 36/262 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALEFSQKACAAGIQPI 70
           L VH++ S  +G   L +I++  +      +AITD      +        ++    +  +
Sbjct: 352 LHVHTALS-GDGRSPLGDIVEAASGRGYGYLAITDHGEDLAINGVTRAQLRSQREELDRL 410

Query: 71  IGCQLDIDM--QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
                D+ +     L +  +G   +     + L           +  V   + LDQ  Q+
Sbjct: 411 GERYPDMRLLQGCELNIGPEGGLDYDLDFRMQLDWC--------VAAVHSHFDLDQATQT 462

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            RI  +  ++     +  LTG   G   R           +                   
Sbjct: 463 KRIIAAM-EDPSVHAIAHLTGRRIG--RRPGIELDIDAVLEAAAE--------------- 504

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             G      S + +L  + ++ L    +   L   D +AH V      +    Q  R  V
Sbjct: 505 -TGTAIEINSALGRLDVSADV-LRRAQDPRVLFLIDTDAHHVSELERMAAGCQQATRGWV 562

Query: 249 TPDHYLKNRSEMVSIFSDLPEA 270
             +  L   +     F D   A
Sbjct: 563 PRERVLNTWT--REAFLDWVRA 582


>gi|148378656|ref|YP_001253197.1| PHP domain protein [Clostridium botulinum A str. ATCC 3502]
 gi|153932799|ref|YP_001383039.1| phosphotransferase domain-containing protein [Clostridium
          botulinum A str. ATCC 19397]
 gi|153934904|ref|YP_001386588.1| phosphotransferase domain-containing protein [Clostridium
          botulinum A str. Hall]
 gi|148288140|emb|CAL82208.1| putative phophoesterase [Clostridium botulinum A str. ATCC 3502]
 gi|152928843|gb|ABS34343.1| PHP domain protein [Clostridium botulinum A str. ATCC 19397]
 gi|152930818|gb|ABS36317.1| PHP domain protein [Clostridium botulinum A str. Hall]
          Length = 272

 Score = 51.1 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +  L VH+++S  +G   + N+LD        AIAITD + +    E ++      ++ +
Sbjct: 3  YADLHVHTNHS--DGICEIANVLDMAKKKGIKAIAITDHDTVDQFDEINELGRKMDLEVV 60

Query: 71 IGCQLDIDMQDNLKMTN 87
           G ++     D  K  +
Sbjct: 61 KGVEMSCYDYDVFKKVH 77


>gi|323484737|ref|ZP_08090096.1| PHP domain-containing protein [Clostridium symbiosum WAL-14163]
 gi|323401974|gb|EGA94313.1| PHP domain-containing protein [Clostridium symbiosum WAL-14163]
          Length = 285

 Score = 51.1 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F+ L VHSS S  +G L+   + +        A A+TD +      E  + A   G++ I
Sbjct: 3  FIDLHVHSSAS--DGTLAPGPVTELALEKGLYAYALTDHDTTDGIDEAVRAAAGTGLEVI 60

Query: 71 IGCQLDIDMQ 80
           G +L    +
Sbjct: 61 PGTELSCIYE 70


>gi|326562576|gb|EGE12889.1| PHP-like protein [Moraxella catarrhalis 103P14B1]
 gi|326573516|gb|EGE23479.1| PHP-like protein [Moraxella catarrhalis 101P30B1]
 gi|326577766|gb|EGE27639.1| PHP-like protein [Moraxella catarrhalis O35E]
          Length = 314

 Score = 51.1 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +G  +   ++ K+A       A+TD + +    E  Q A   G++ I G 
Sbjct: 20 LHMHSTCS--DGTNTPTELIKKVALAGIQMAALTDHDTIKGLDEAKQTAKMVGVELIRGV 77

Query: 74 QLDIDM 79
          ++    
Sbjct: 78 EVSCTH 83


>gi|168183339|ref|ZP_02618003.1| PHP domain protein [Clostridium botulinum Bf]
 gi|237793977|ref|YP_002861529.1| PHP domain-containing protein [Clostridium botulinum Ba4 str.
          657]
 gi|182673439|gb|EDT85400.1| PHP domain protein [Clostridium botulinum Bf]
 gi|229262616|gb|ACQ53649.1| PHP domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 272

 Score = 51.1 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +  L VH+++S  +G   + N+LD        AIAITD + +    E ++      ++ +
Sbjct: 3  YADLHVHTNHS--DGICEIANVLDMAKKKGIKAIAITDHDTVDQFDEINELGRKMDLEVV 60

Query: 71 IGCQLDIDMQDNLKMTN 87
           G ++     D  K  +
Sbjct: 61 KGVEMSCYDYDVFKKVH 77


>gi|95931013|ref|ZP_01313741.1| PHP-like [Desulfuromonas acetoxidans DSM 684]
 gi|95132909|gb|EAT14580.1| PHP-like [Desulfuromonas acetoxidans DSM 684]
          Length = 243

 Score = 51.1 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 48/159 (30%), Gaps = 19/159 (11%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-NLFSALEFS 59
           +++ L      V L VH+  S      ++       AA     I +TD   ++  A  F 
Sbjct: 1   MSEILSPE---VDLHVHTIAS-GHAFSTIEENARAAAALGLKGIGMTDHGPSMPGAPHFY 56

Query: 60  QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                 G  P   C + I       + ++G+                   Q L  +++  
Sbjct: 57  HFMV-LGFIPDTLCGVRIFRGIEANLLDEGRIDLDESY-----------LQNLDVILAGF 104

Query: 120 YLLDQGKQSVRIC--LSWLQEIGTEGLIMLTGGSSGPID 156
           +       + R     + +  +    + +++   +    
Sbjct: 105 HADCGYTGTTRDDHTRTMMLAMENPLVHIISHPGNPEFP 143


>gi|326571695|gb|EGE21710.1| PHP-like protein [Moraxella catarrhalis BC7]
          Length = 314

 Score = 51.1 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +G  +   ++ K+A       A+TD + +    E  Q A   G++ I G 
Sbjct: 20 LHMHSTCS--DGTNTPTELIKKVALAGIQMAALTDHDTIKGLDEAKQTAKMVGVELIRGV 77

Query: 74 QLDIDM 79
          ++    
Sbjct: 78 EVSCTH 83


>gi|326562550|gb|EGE12865.1| PHP-like protein [Moraxella catarrhalis 46P47B1]
 gi|326569090|gb|EGE19153.1| PHP-like protein [Moraxella catarrhalis BC8]
          Length = 314

 Score = 51.1 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +G  +   ++ K+A       A+TD + +    E  Q A   G++ I G 
Sbjct: 20 LHMHSTCS--DGTNTPTELIKKVALAGIQMAALTDHDTIKGLDEAKQTAKMVGVELIRGV 77

Query: 74 QLDIDM 79
          ++    
Sbjct: 78 EVSCTH 83


>gi|297526076|ref|YP_003668100.1| PHP domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297254992|gb|ADI31201.1| PHP domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 222

 Score = 51.1 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +HS+YS  +G  S   I+          I+ITD N+   ++  S+ A  
Sbjct: 2  HIHSTYS--DGRASPKEIILTAIYKGLNIISITDHNSFQGSVAASKLAKD 49


>gi|189424390|ref|YP_001951567.1| PHP domain protein [Geobacter lovleyi SZ]
 gi|189420649|gb|ACD95047.1| PHP domain protein [Geobacter lovleyi SZ]
          Length = 286

 Score = 51.1 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HSS S  +G L+   ++          IA+ D + +      +      GI+ I G 
Sbjct: 4  LHLHSSCS--DGILAPAQLVSAAQLSGLSTIALCDHDTVAGVEAATLAGKEQGIEVIPGV 61


>gi|326576320|gb|EGE26230.1| PHP-like protein [Moraxella catarrhalis CO72]
          Length = 314

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +G  +   ++ K+A       A+TD + +    E  Q A   G++ I G 
Sbjct: 20 LHMHSTCS--DGTNTPTELIKKVALAGIQMAALTDHDTIKGLDEAKQTAKMVGVELIRGV 77

Query: 74 QLDIDM 79
          ++    
Sbjct: 78 EVSCTH 83


>gi|322804981|emb|CBZ02540.1| protein trpH [Clostridium botulinum H04402 065]
          Length = 272

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +  L VH+++S  +G   + N+LD        AIAITD + +    E ++      ++ +
Sbjct: 3  YADLHVHTNHS--DGICEIANVLDMAKKKGIKAIAITDHDTVDQFDEINELGRKMDLEVV 60

Query: 71 IGCQLDIDMQDNLKMTN 87
           G ++     D  K  +
Sbjct: 61 KGVEMSCYDYDVFKKVH 77


>gi|296112536|ref|YP_003626474.1| PHP-like protein [Moraxella catarrhalis RH4]
 gi|295920230|gb|ADG60581.1| PHP-like protein [Moraxella catarrhalis RH4]
 gi|326564103|gb|EGE14343.1| PHP-like protein [Moraxella catarrhalis 12P80B1]
          Length = 314

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +G  +   ++ K+A       A+TD + +    E  Q A   G++ I G 
Sbjct: 20 LHMHSTCS--DGTNTPTELIKKVALAGIQMAALTDHDTIKGLDEAKQTAKMVGVELIRGV 77

Query: 74 QLDIDM 79
          ++    
Sbjct: 78 EVSCTH 83


>gi|237807719|ref|YP_002892159.1| PHP domain-containing protein [Tolumonas auensis DSM 9187]
 gi|237499980|gb|ACQ92573.1| PHP domain protein [Tolumonas auensis DSM 9187]
          Length = 287

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
          L  HS+ S  +G  S + ++ +    +   +A+TD +++    +  Q     G
Sbjct: 5  LHSHSTCS--DGHFSPDELVARAVEKEVDVLALTDHDSVDGIAQAQQAIEKNG 55


>gi|326561305|gb|EGE11663.1| PHP-like protein [Moraxella catarrhalis 7169]
          Length = 314

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +G  +   ++ K+A       A+TD + +    E  Q A   G++ I G 
Sbjct: 20 LHMHSTCS--DGTNTPTELIKKVALAGIQMAALTDHDTIKGLDEAKQTAKMVGVELIRGV 77

Query: 74 QLDIDM 79
          ++    
Sbjct: 78 EVSCTH 83


>gi|227326054|ref|ZP_03830078.1| putative phosphoesterase [Pectobacterium carotovorum subsp.
          carotovorum WPP14]
          Length = 290

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 2  TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          +Q +   P +  L  H++ S  +G L+   ++ +    +   +AITD +      E  Q 
Sbjct: 5  SQPISSFPLY-DLHSHTTAS--DGLLTPAALVSRAVDMRVSVLAITDHDTTAGLDEAQQA 61

Query: 62 ACAAGIQ 68
              G+ 
Sbjct: 62 IAQQGLP 68


>gi|158320577|ref|YP_001513084.1| phosphotransferase domain-containing protein [Alkaliphilus
          oremlandii OhILAs]
 gi|158140776|gb|ABW19088.1| PHP domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 275

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
          F+ +  HS+ S  +G      +++         IAITD + +    E    A
Sbjct: 3  FIDMHTHSTAS--DGVYRPKELVEYALEKGLSGIAITDHDTIDGIEEAVDHA 52


>gi|187777776|ref|ZP_02994249.1| hypothetical protein CLOSPO_01368 [Clostridium sporogenes ATCC
          15579]
 gi|187774704|gb|EDU38506.1| hypothetical protein CLOSPO_01368 [Clostridium sporogenes ATCC
          15579]
          Length = 272

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +  L VH+++S  +G   + N+LD        AIAITD + +    E ++      ++ +
Sbjct: 3  YADLHVHTNHS--DGICEIANVLDMAKKKGIKAIAITDHDTVDQFDEINELGRKMDLEVV 60

Query: 71 IGCQLDIDMQDNLKMTN 87
           G ++     D  K  +
Sbjct: 61 KGVEMSCYDYDVFKKVH 77


>gi|218247571|ref|YP_002372942.1| PHP domain-containing protein [Cyanothece sp. PCC 8801]
 gi|257061096|ref|YP_003138984.1| PHP domain protein [Cyanothece sp. PCC 8802]
 gi|218168049|gb|ACK66786.1| PHP domain protein [Cyanothece sp. PCC 8801]
 gi|256591262|gb|ACV02149.1| PHP domain protein [Cyanothece sp. PCC 8802]
          Length = 230

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 2  TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          T + E  P   +  +H++ S  +G L   +++++  A     +AITD +++  
Sbjct: 23 TLHPESCPYHYNFHMHTTCS--DGQLRPKSLIEQAIAIGLKGLAITDHHSING 73


>gi|30062789|ref|NP_836960.1| putative enzyme [Shigella flexneri 2a str. 2457T]
 gi|194435043|ref|ZP_03067282.1| putative phosphoesterase [Shigella dysenteriae 1012]
 gi|30041037|gb|AAP16767.1| putative enzyme [Shigella flexneri 2a str. 2457T]
 gi|194416700|gb|EDX32830.1| putative phosphoesterase [Shigella dysenteriae 1012]
 gi|281600688|gb|ADA73672.1| putative metal-dependent phosphoesterases (PHP family) [Shigella
           flexneri 2002017]
 gi|320181706|gb|EFW56617.1| hypothetical protein SGB_01069 [Shigella boydii ATCC 9905]
 gi|332098263|gb|EGJ03236.1| PHP domain protein [Shigella dysenteriae 155-74]
          Length = 293

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQQIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 130 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|33322983|gb|AAQ07228.1|AF496536_1 DNA polymerase III, alpha chain [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 67

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 803 KKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGTTTARHIMEASADK 860
            +   +A +  I      +N      +K+ D         A+ G G + A+ I+ A ++ 
Sbjct: 5   MELVNEAIERGINFKMVDINESEATTYKIVDKHTILAPFNAVDGXGDSAAKQIVAARSEA 64

Query: 861 PF 862
           PF
Sbjct: 65  PF 66


>gi|293414598|ref|ZP_06657247.1| yciV enzyme [Escherichia coli B185]
 gi|291434656|gb|EFF07629.1| yciV enzyme [Escherichia coli B185]
          Length = 292

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQQIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 130 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|197286071|ref|YP_002151943.1| metal-dependent phosphoesterase [Proteus mirabilis HI4320]
 gi|227356587|ref|ZP_03840974.1| metal-dependent phosphoesterase [Proteus mirabilis ATCC 29906]
 gi|194683558|emb|CAR44422.1| putative metal-dependent phosphoesterase [Proteus mirabilis
          HI4320]
 gi|227163343|gb|EEI48270.1| metal-dependent phosphoesterase [Proteus mirabilis ATCC 29906]
          Length = 274

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +  L VH+++S  +G   + ++L+    +    IAITD +      E  ++    G+  +
Sbjct: 3  YADLHVHTNHS--DGVCEIKDVLENAFRNGIKTIAITDHDTTNHYDEIYREGERLGLNIV 60

Query: 71 IGCQLDIDMQDNLKMTN 87
           G ++     D  K  +
Sbjct: 61 KGVEMSCYDFDVYKKVH 77


>gi|226952862|ref|ZP_03823326.1| metal-dependent phosphoesterase [Acinetobacter sp. ATCC 27244]
 gi|226836373|gb|EEH68756.1| metal-dependent phosphoesterase [Acinetobacter sp. ATCC 27244]
          Length = 291

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 6/66 (9%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGI 67
          V L  H+  S  +G  S   ++      +   +A+TD + +       +     A    I
Sbjct: 4  VDLHTHTLIS--DGTYSPEQLVQAAVDLKIHTLALTDHDTMDGLTRAQRYLDEHAQDYDI 61

Query: 68 QPIIGC 73
          + I G 
Sbjct: 62 RLISGV 67


>gi|331667651|ref|ZP_08368515.1| protein TrpH [Escherichia coli TA271]
 gi|331065236|gb|EGI37131.1| protein TrpH [Escherichia coli TA271]
          Length = 314

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 89/290 (30%), Gaps = 51/290 (17%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 5   LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 62

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 63  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEG 122

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 123 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 182

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 183 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLAALARQH 239

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
            L     ++             + +      V    ++P+ T +  + ++
Sbjct: 240 HLWASQGSDFHQPCPWIELGRKLWLPAGVEGVWQLWEQPQNTTERGIMSQ 289


>gi|328867600|gb|EGG15982.1| hypothetical protein DFA_09654 [Dictyostelium fasciculatum]
          Length = 434

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           F+    HS YS  +G  +   +++   A+   A+ +TD N +  +L   + A   
Sbjct: 89  FMDTHCHSVYS--DGMFTPEQLIEWHIANGYNAMVVTDHNTVDGSLAAQKLAREK 141


>gi|257388033|ref|YP_003177806.1| PHP domain protein [Halomicrobium mukohataei DSM 12286]
 gi|257170340|gb|ACV48099.1| PHP domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 228

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HSS S  +G   +  +L++  A    A+A+TD + + ++LE ++ A   G+  I 
Sbjct: 4  VELHAHSSLSY-DGRDPVELLLEQAEAVGLDALAVTDHDEIDASLEAARLAPEYGLIGIP 62

Query: 72 GC 73
          G 
Sbjct: 63 GA 64


>gi|110805269|ref|YP_688789.1| hypothetical protein SFV_1279 [Shigella flexneri 5 str. 8401]
 gi|110614817|gb|ABF03484.1| putative enzymes [Shigella flexneri 5 str. 8401]
          Length = 286

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 5   LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 62

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 63  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQQIAERLEKAQIPGALEG 122

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 123 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 182

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 183 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 239

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 240 HLWASQGSDFHQPCPW 255


>gi|290475291|ref|YP_003468179.1| protein trpH [Xenorhabdus bovienii SS-2004]
 gi|289174612|emb|CBJ81406.1| Protein trpH [Xenorhabdus bovienii SS-2004]
          Length = 285

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          L  H++ S  +G LS   ++D+  +     +AITD +        
Sbjct: 13 LHSHTTAS--DGVLSPEQLVDRAVSMGINVLAITDHDTTDGIPPA 55


>gi|26247595|ref|NP_753635.1| protein trpH [Escherichia coli CFT073]
 gi|91210557|ref|YP_540543.1| putative enzyme [Escherichia coli UTI89]
 gi|215486561|ref|YP_002328992.1| hypothetical protein E2348C_1456 [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218558251|ref|YP_002391164.1| hypothetical protein ECS88_1400 [Escherichia coli S88]
 gi|227886306|ref|ZP_04004111.1| PHP family metal-dependent phosphoesterase [Escherichia coli 83972]
 gi|237705289|ref|ZP_04535770.1| trpH [Escherichia sp. 3_2_53FAA]
 gi|306813711|ref|ZP_07447892.1| hypothetical protein ECNC101_17402 [Escherichia coli NC101]
 gi|331657313|ref|ZP_08358275.1| protein TrpH [Escherichia coli TA206]
 gi|26107997|gb|AAN80197.1|AE016760_56 Protein trpH [Escherichia coli CFT073]
 gi|91072131|gb|ABE07012.1| putative enzyme [Escherichia coli UTI89]
 gi|215264633|emb|CAS09004.1| predicted protein [Escherichia coli O127:H6 str. E2348/69]
 gi|218365020|emb|CAR02723.1| conserved hypothetical protein [Escherichia coli S88]
 gi|222033070|emb|CAP75810.1| Protein trpH [Escherichia coli LF82]
 gi|226900046|gb|EEH86305.1| trpH [Escherichia sp. 3_2_53FAA]
 gi|227836510|gb|EEJ46976.1| PHP family metal-dependent phosphoesterase [Escherichia coli 83972]
 gi|305852985|gb|EFM53430.1| hypothetical protein ECNC101_17402 [Escherichia coli NC101]
 gi|307553324|gb|ADN46099.1| putative phosphoesterase [Escherichia coli ABU 83972]
 gi|307627160|gb|ADN71464.1| hypothetical protein UM146_10455 [Escherichia coli UM146]
 gi|312945900|gb|ADR26727.1| hypothetical protein NRG857_06495 [Escherichia coli O83:H1 str. NRG
           857C]
 gi|320195721|gb|EFW70346.1| hypothetical protein EcoM_02147 [Escherichia coli WV_060327]
 gi|323949131|gb|EGB45023.1| PHP domain-containing protein [Escherichia coli H252]
 gi|323953863|gb|EGB49664.1| PHP domain-containing protein [Escherichia coli H263]
 gi|331055561|gb|EGI27570.1| protein TrpH [Escherichia coli TA206]
          Length = 293

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 78/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W     +  +I  
Sbjct: 130 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQSIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|291617618|ref|YP_003520360.1| TrpH [Pantoea ananatis LMG 20103]
 gi|291152648|gb|ADD77232.1| TrpH [Pantoea ananatis LMG 20103]
          Length = 295

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H+  S  +G LS   ++++    +   +AITD + +    E  Q      + 
Sbjct: 12 LHSHTRAS--DGLLSPQALVERAVDMRVGVLAITDHDTVAGVTEAQQTVRDQQLP 64


>gi|283853070|ref|ZP_06370326.1| PHP domain protein [Desulfovibrio sp. FW1012B]
 gi|283571537|gb|EFC19541.1| PHP domain protein [Desulfovibrio sp. FW1012B]
          Length = 221

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+++S  +G L  + +  +       A+A+TD 
Sbjct: 4  LHTHTTFS--DGVLIPSELARRATKAGYRAMAMTDH 37


>gi|294649265|ref|ZP_06726700.1| PHP family metal-dependent phosphoesterase [Acinetobacter
          haemolyticus ATCC 19194]
 gi|292824818|gb|EFF83586.1| PHP family metal-dependent phosphoesterase [Acinetobacter
          haemolyticus ATCC 19194]
          Length = 291

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 6/66 (9%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGI 67
          V L  H+  S  +G  S   ++      +   +A+TD + +       +     A    I
Sbjct: 4  VDLHTHTLIS--DGTYSPEQLVQAAVDLKIHTLAVTDHDTMDGLTRAQRYLDEHAQDHDI 61

Query: 68 QPIIGC 73
          + I G 
Sbjct: 62 RLISGV 67


>gi|163839945|ref|YP_001624351.1| phosphotransferase domain-containing protein [Renibacterium
           salmoninarum ATCC 33209]
 gi|162953421|gb|ABY22936.1| PHP domain containing protein (TRPH) [Renibacterium salmoninarum
           ATCC 33209]
          Length = 277

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 80/243 (32%), Gaps = 17/243 (6%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             HS+ S  +G      ++    A +   +A+TD ++       S  A   GI  + G +
Sbjct: 2   HTHSNVS--DGTELPAYLVQSAVAARLDVVALTDHDSTAGWPAASVAARELGIALVPGME 59

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
           +     + + +        P    ++  +S ++   RL    S +  L +      +   
Sbjct: 60  VSCRTSEGITVHLLSYLHDPQHSGLLAEISKSK-DARLRRAESMVSKLAEDY---PLNWD 115

Query: 135 WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR 194
            + +    G  +     +  +  A   +    A   +LT +  +          H   D 
Sbjct: 116 DVSQHVAPGATVGRPHITDALVAAGIVSDRNEAFASILTSRSKY-------WVSHYAPDP 168

Query: 195 YRESQVVQLAYTHELPLVATNNSLFLSE--EDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
               ++V+ A    +P+ A   ++       +    D++ A      +  +D P    + 
Sbjct: 169 ILAVELVRAA--GGVPVFAHPVAVERGRVVSEAVYQDMIDAGLAGLEIEHRDNPAEGKEF 226

Query: 253 YLK 255
             K
Sbjct: 227 LYK 229


>gi|20808251|ref|NP_623422.1| PHP family histidinol phosphatase/hydrolase [Thermoanaerobacter
          tengcongensis MB4]
 gi|254479439|ref|ZP_05092768.1| putative PHP domain protein [Carboxydibrachium pacificum DSM
          12653]
 gi|20516849|gb|AAM25026.1| Histidinol phosphatase and related hydrolases of the PHP family
          [Thermoanaerobacter tengcongensis MB4]
 gi|214034624|gb|EEB75369.1| putative PHP domain protein [Carboxydibrachium pacificum DSM
          12653]
          Length = 243

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 5/48 (10%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSA 55
          F     H+ YS   G  ++   + K       AIAITD       +  
Sbjct: 4  FADYHTHTIYS--HGKGTIEENVKKAVELGLKAIAITDHGPAHVFYGM 49


>gi|15801913|ref|NP_287933.1| putative enzyme [Escherichia coli O157:H7 EDL933]
 gi|15831092|ref|NP_309865.1| hypothetical protein ECs1838 [Escherichia coli O157:H7 str. Sakai]
 gi|168751154|ref|ZP_02776176.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4113]
 gi|168758350|ref|ZP_02783357.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4401]
 gi|168763587|ref|ZP_02788594.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4501]
 gi|168771264|ref|ZP_02796271.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4486]
 gi|168775074|ref|ZP_02800081.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4196]
 gi|168783768|ref|ZP_02808775.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4076]
 gi|168790065|ref|ZP_02815072.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC869]
 gi|168801612|ref|ZP_02826619.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC508]
 gi|195939199|ref|ZP_03084581.1| hypothetical protein EscherichcoliO157_22731 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208811183|ref|ZP_03253016.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4206]
 gi|208816135|ref|ZP_03257314.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4045]
 gi|208820932|ref|ZP_03261252.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4042]
 gi|209398686|ref|YP_002270320.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4115]
 gi|217329083|ref|ZP_03445163.1| putative phosphoesterase [Escherichia coli O157:H7 str. TW14588]
 gi|254792854|ref|YP_003077691.1| hypothetical protein ECSP_1784 [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224248|ref|ZP_05938529.1| hypothetical protein EscherichiacoliO157_06540 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257496|ref|ZP_05950029.1| hypothetical protein EscherichiacoliO157EcO_16987 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291282353|ref|YP_003499171.1| putative phosphoesterase [Escherichia coli O55:H7 str. CB9615]
 gi|12515531|gb|AAG56549.1|AE005380_8 putative enzymes [Escherichia coli O157:H7 str. EDL933]
 gi|13361303|dbj|BAB35261.1| putative enzymes [Escherichia coli O157:H7 str. Sakai]
 gi|187769236|gb|EDU33080.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4196]
 gi|188014757|gb|EDU52879.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4113]
 gi|188998944|gb|EDU67930.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4076]
 gi|189354808|gb|EDU73227.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4401]
 gi|189359945|gb|EDU78364.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4486]
 gi|189366264|gb|EDU84680.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4501]
 gi|189370412|gb|EDU88828.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC869]
 gi|189376266|gb|EDU94682.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC508]
 gi|208724689|gb|EDZ74397.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4206]
 gi|208732783|gb|EDZ81471.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4045]
 gi|208741055|gb|EDZ88737.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4042]
 gi|209160086|gb|ACI37519.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4115]
 gi|209772048|gb|ACI84336.1| putative enzyme [Escherichia coli]
 gi|209772050|gb|ACI84337.1| putative enzyme [Escherichia coli]
 gi|209772052|gb|ACI84338.1| putative enzyme [Escherichia coli]
 gi|209772054|gb|ACI84339.1| putative enzyme [Escherichia coli]
 gi|209772056|gb|ACI84340.1| putative enzyme [Escherichia coli]
 gi|217317522|gb|EEC25950.1| putative phosphoesterase [Escherichia coli O157:H7 str. TW14588]
 gi|254592254|gb|ACT71615.1| conserved protein [Escherichia coli O157:H7 str. TW14359]
 gi|290762226|gb|ADD56187.1| Putative phosphoesterase [Escherichia coli O55:H7 str. CB9615]
 gi|320189983|gb|EFW64635.1| hypothetical protein ECoD_03466 [Escherichia coli O157:H7 str.
           EC1212]
 gi|320637160|gb|EFX06986.1| putative phosphoesterase [Escherichia coli O157:H7 str. G5101]
 gi|320642526|gb|EFX11774.1| putative phosphoesterase [Escherichia coli O157:H- str. 493-89]
 gi|320647879|gb|EFX16587.1| putative phosphoesterase [Escherichia coli O157:H- str. H 2687]
 gi|320653481|gb|EFX21586.1| putative phosphoesterase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320659181|gb|EFX26770.1| putative phosphoesterase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320663974|gb|EFX31161.1| putative phosphoesterase [Escherichia coli O157:H7 str. LSU-61]
 gi|326341074|gb|EGD64867.1| hypothetical protein ECF_03624 [Escherichia coli O157:H7 str. 1125]
 gi|326343315|gb|EGD67082.1| putative phosphoesterase [Escherichia coli O157:H7 str. 1044]
          Length = 293

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQQIAERLEKAHIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 130 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHDGDAMEVAQCQQSPNER---TQLATLARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|292488389|ref|YP_003531271.1| protein trpH [Erwinia amylovora CFBP1430]
 gi|292899586|ref|YP_003538955.1| phosphoesterase [Erwinia amylovora ATCC 49946]
 gi|291199434|emb|CBJ46551.1| putative phosphoesterase [Erwinia amylovora ATCC 49946]
 gi|291553818|emb|CBA20863.1| Protein trpH [Erwinia amylovora CFBP1430]
 gi|312172532|emb|CBX80788.1| Protein trpH [Erwinia amylovora ATCC BAA-2158]
          Length = 303

 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 59/171 (34%), Gaps = 19/171 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+  S  +G L+   ++ +    +   +AITD +               GI P    
Sbjct: 16  LHSHTRAS--DGLLTPEQLVLRAVQQRVGVLAITDHDT------------TDGIAPAREA 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +   +   L    +  T +      ++ +     + +++ L+      ++     R+  
Sbjct: 62  MMRHQLPLRLVDGVEISTLWENHEIHIVGLGIDIAHPQMVALL--AAQAERRLARARLIA 119

Query: 134 SWLQEIGTEGLI--MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             L++    G +   L     G + R  F     +A  +    +++F + L
Sbjct: 120 GRLEKAHIPGALDGALALAEGGAVTRGHFA-RFLIAAGKADNMQQVFKNYL 169


>gi|302524379|ref|ZP_07276721.1| phosphotransferase domain-containing protein [Streptomyces sp.
          AA4]
 gi|302433274|gb|EFL05090.1| phosphotransferase domain-containing protein [Streptomyces sp.
          AA4]
          Length = 290

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L  HS+ S  +G  S   ++   A      +AITD +    
Sbjct: 8  LHAHSTAS--DGTDSPAELVGAAARAGLDVVAITDHDTTAG 46


>gi|117623526|ref|YP_852439.1| hypothetical protein APECO1_426 [Escherichia coli APEC O1]
 gi|312966806|ref|ZP_07781024.1| PHP domain protein [Escherichia coli 2362-75]
 gi|115512650|gb|ABJ00725.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|294493888|gb|ADE92644.1| putative phosphoesterase [Escherichia coli IHE3034]
 gi|312288270|gb|EFR16172.1| PHP domain protein [Escherichia coli 2362-75]
          Length = 286

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 78/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 5   LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 62

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 63  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEG 122

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W     +  +I  
Sbjct: 123 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQSIDVIHH 182

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 183 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 239

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 240 HLWASQGSDFHQPCPW 255


>gi|11498116|ref|NP_069341.1| hypothetical protein AF0505 [Archaeoglobus fulgidus DSM 4304]
 gi|2650121|gb|AAB90733.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 208

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            L VHSS+S  +G   +  IL+     +   IAITD + +  +LE         + 
Sbjct: 4  AELHVHSSFS--DGRDGVRKILEAAVEKKLEVIAITDHDTVQGSLEAIDIVKEEHLP 58


>gi|153938431|ref|YP_001390013.1| phosphotransferase domain-containing protein [Clostridium
          botulinum F str. Langeland]
 gi|152934327|gb|ABS39825.1| PHP domain protein [Clostridium botulinum F str. Langeland]
 gi|295318099|gb|ADF98476.1| PHP domain protein [Clostridium botulinum F str. 230613]
          Length = 272

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +  L VH+++S  +G   + N+LD        AIAITD + +    E ++      ++ +
Sbjct: 3  YADLHVHTNHS--DGICEIANVLDMAKKKGIKAIAITDHDTVDQFDEINELGRKMDLEVV 60

Query: 71 IGCQLDIDMQDNLKMTN 87
           G ++     D  K  +
Sbjct: 61 KGVEMSCYDYDVFKKVH 77


>gi|226947911|ref|YP_002803002.1| PHP domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|226843276|gb|ACO85942.1| PHP domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 272

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +  L VH+++S  +G   + N+LD        AIAITD + +    E ++      ++ +
Sbjct: 3  YADLHVHTNHS--DGICEIANVLDMAKKKGIKAIAITDHDTVDQFDEINELGRKMDLEVV 60

Query: 71 IGCQLDIDMQDNLKMTN 87
           G ++     D  K  +
Sbjct: 61 KGIEMSCYDYDVFKKVH 77


>gi|116754615|ref|YP_843733.1| phosphotransferase domain-containing protein [Methanosaeta
           thermophila PT]
 gi|116666066|gb|ABK15093.1| PHP C-terminal domain protein [Methanosaeta thermophila PT]
          Length = 588

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS++S  +G  S+  ++    +     IAITD 
Sbjct: 358 LHVHSTWS--DGVGSIEEMVSHARSLGYEYIAITDH 391


>gi|304396085|ref|ZP_07377967.1| PHP domain protein [Pantoea sp. aB]
 gi|304356454|gb|EFM20819.1| PHP domain protein [Pantoea sp. aB]
          Length = 294

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H+  S  +G L+   ++ +    +   +AITD +++    E  Q A    + 
Sbjct: 12 LHSHTRAS--DGFLTPAALVQRAVEMRVGVLAITDHDSVAGVEEAQQTALDQDLP 64


>gi|221134962|ref|ZP_03561265.1| PHP-like protein [Glaciecola sp. HTCC2999]
          Length = 286

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 80/256 (31%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LFSALEFSQKACAA----- 65
           L  H+ YS  +G LS   ++ +    Q   +AITD +    L  A     +         
Sbjct: 5   LHSHTYYS--DGHLSPAELVLRAHQMQLDVLAITDHDTTQALAEARHAQAQEKRHLEIIS 62

Query: 66  GIQPIIGCQLD-----------IDMQDNLKMTNQGKTPFPTVPSIVL------------L 102
           GI+                    D Q   ++  Q +T       I +             
Sbjct: 63  GIELTTRWHGFDIHILGLHFDEHDEQLQQRLLEQTRTRVDRARQICVKLAKCGIENVFDD 122

Query: 103 VSTAEGYQRLIE------LVSR--------MYLLDQGK-QSVRICLSWLQEIGTEGLIML 147
                G  ++        L+ R         +    GK +   +   W+        I  
Sbjct: 123 AMVKVGQGQITRAHIAQVLLERGEVSSFQGAFTKYLGKDKRAFVSAQWIDIATAIQWIHE 182

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
            GG +     A +   ++  ++ L  FK L GD + V    H      ++  + +LA  +
Sbjct: 183 AGGVAAIAHPASYDMKTKWLKRLLSEFKSLGGDGMEV---THPNMQPTKKELLAKLALEY 239

Query: 208 ELPLVATNNSLFLSEE 223
           +L  V  ++  F S  
Sbjct: 240 DLKAVVGSDFHFPSRW 255


>gi|15679475|ref|NP_276592.1| hypothetical protein MTH1478 [Methanothermobacter
          thermautotrophicus str. Delta H]
 gi|2622593|gb|AAB85953.1| conserved protein [Methanothermobacter thermautotrophicus str.
          Delta H]
          Length = 154

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           +HS YS  +   +   IL + +A    A+A+ D N +  ++   +++   GI  +   
Sbjct: 7  HIHSVYS-GDARGTPREILRRASAVGLDAVAVADHNTMKGSIIALKESRGMGITVVPAM 64


>gi|238916545|ref|YP_002930062.1| hypothetical protein EUBELI_00602 [Eubacterium eligens ATCC
          27750]
 gi|238871905|gb|ACR71615.1| Hypothetical protein EUBELI_00602 [Eubacterium eligens ATCC
          27750]
          Length = 297

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
          L VHS+ S  +G  S   ++DK       A A+TD +      E     
Sbjct: 6  LHVHSTCS--DGTDSPAVLVDKAVDKGLAAFALTDHDTTRGVKEALLAC 52


>gi|304317960|ref|YP_003853105.1| PHP domain protein [Thermoanaerobacterium thermosaccharolyticum
          DSM 571]
 gi|302779462|gb|ADL70021.1| PHP domain protein [Thermoanaerobacterium thermosaccharolyticum
          DSM 571]
          Length = 225

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
             VH++YS  +G   + ++   +       +AI+D N L  A+E  +
Sbjct: 7  EFHVHTNYS-NDGFSKVPDLKKSLMKKGINIVAISDHNTLKGAVEAEK 53


>gi|330507071|ref|YP_004383499.1| PHP domain-containing protein [Methanosaeta concilii GP-6]
 gi|328927879|gb|AEB67681.1| PHP domain protein [Methanosaeta concilii GP-6]
          Length = 210

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+++S  +G L  + ++ +       AI ITD 
Sbjct: 4  LHTHTTFS--DGELIPSELVRRAEVLGYTAIGITDH 37


>gi|229491240|ref|ZP_04385068.1| PHP domain protein [Rhodococcus erythropolis SK121]
 gi|229321978|gb|EEN87771.1| PHP domain protein [Rhodococcus erythropolis SK121]
          Length = 333

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G   +  ++ + AA      A+TD 
Sbjct: 99  LHTHSDWS--DGGSPIEEMMRRAAALGHDYCALTDH 132


>gi|147919686|ref|YP_686569.1| hypothetical protein RCIX2111 [uncultured methanogenic archaeon
          RC-I]
 gi|110621965|emb|CAJ37243.1| predicted metal-dependent phosphoesterase (PHP family)
          [uncultured methanogenic archaeon RC-I]
          Length = 218

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 11/78 (14%)

Query: 14 LQVHSSYSLL-EGALSLNNILDKIAADQQPAIAITDT---NNLFSALEFSQKAC----AA 65
          L  H   SLL +G L  + ++ +       AIAITD     NL   ++ S+KA     + 
Sbjct: 4  LHTH---SLLSDGELLPSELVRRAKVIGYEAIAITDHADYTNLERLIDASKKARVLEESY 60

Query: 66 GIQPIIGCQLDIDMQDNL 83
          GI  I G +L     +++
Sbjct: 61 GIVVISGVELTHLPPEHI 78


>gi|157154837|ref|YP_001462563.1| putative phosphoesterase [Escherichia coli E24377A]
 gi|157076867|gb|ABV16575.1| putative phosphoesterase [Escherichia coli E24377A]
          Length = 286

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 87/287 (30%), Gaps = 51/287 (17%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 5   LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 62

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 63  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEG 122

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 123 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 182

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 183 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 239

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
            L     ++             + +      V    ++P+ T +  L
Sbjct: 240 HLWASQGSDFHQPCPWIELGRKLWLPAGVKGVWQLWEQPQNTTEREL 286


>gi|284030507|ref|YP_003380438.1| PHP domain-containing protein [Kribbella flavida DSM 17836]
 gi|283809800|gb|ADB31639.1| PHP domain protein [Kribbella flavida DSM 17836]
          Length = 351

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS +S  +G   +  +    A      +A+TD 
Sbjct: 113 LHLHSDWS--DGGSPIEEMARTAARLGHRYMALTDH 146


>gi|82776623|ref|YP_402972.1| putative enzymes [Shigella dysenteriae Sd197]
 gi|81240771|gb|ABB61481.1| putative enzymes [Shigella dysenteriae Sd197]
          Length = 293

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 130 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|312898914|ref|ZP_07758302.1| PHP domain protein [Megasphaera micronuciformis F0359]
 gi|310620076|gb|EFQ03648.1| PHP domain protein [Megasphaera micronuciformis F0359]
          Length = 274

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
          FV L VH+  S  +G  S   + +K A      I++TD + L 
Sbjct: 2  FVDLHVHTDCS--DGVYSPEEVTEKAARAGLSVISLTDHDTLA 42


>gi|226309456|ref|YP_002769418.1| hypothetical protein RER_59710 [Rhodococcus erythropolis PR4]
 gi|226188575|dbj|BAH36679.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 333

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G   +  ++ + AA      A+TD 
Sbjct: 99  LHTHSDWS--DGGSPIEEMMRRAAALGHDYCALTDH 132


>gi|317126165|ref|YP_004100277.1| PHP domain protein [Intrasporangium calvum DSM 43043]
 gi|315590253|gb|ADU49550.1| PHP domain protein [Intrasporangium calvum DSM 43043]
          Length = 338

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS +S  +G   +  ++       Q  +A+TD 
Sbjct: 103 LHVHSDWS--DGGSPIEEMVLTAVELGQEWMALTDH 136


>gi|209918506|ref|YP_002292590.1| hypothetical protein ECSE_1315 [Escherichia coli SE11]
 gi|209911765|dbj|BAG76839.1| conserved hypothetical protein [Escherichia coli SE11]
          Length = 293

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 130 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLAALARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|16129227|ref|NP_415782.1| conserved protein [Escherichia coli str. K-12 substr. MG1655]
 gi|89108112|ref|AP_001892.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110]
 gi|170020370|ref|YP_001725324.1| phosphotransferase domain-containing protein [Escherichia coli ATCC
           8739]
 gi|170080943|ref|YP_001730263.1| hypothetical protein ECDH10B_1381 [Escherichia coli str. K-12
           substr. DH10B]
 gi|191166661|ref|ZP_03028489.1| putative phosphoesterase [Escherichia coli B7A]
 gi|193062671|ref|ZP_03043765.1| putative phosphoesterase [Escherichia coli E22]
 gi|193069985|ref|ZP_03050933.1| putative phosphoesterase [Escherichia coli E110019]
 gi|194426096|ref|ZP_03058652.1| putative phosphoesterase [Escherichia coli B171]
 gi|218694837|ref|YP_002402504.1| hypothetical protein EC55989_1423 [Escherichia coli 55989]
 gi|238900499|ref|YP_002926295.1| hypothetical protein BWG_1095 [Escherichia coli BW2952]
 gi|256023026|ref|ZP_05436891.1| hypothetical protein E4_06614 [Escherichia sp. 4_1_40B]
 gi|260843614|ref|YP_003221392.1| hypothetical protein ECO103_1428 [Escherichia coli O103:H2 str.
           12009]
 gi|260854964|ref|YP_003228855.1| hypothetical protein ECO26_1831 [Escherichia coli O26:H11 str.
           11368]
 gi|260867715|ref|YP_003234117.1| hypothetical protein ECO111_1646 [Escherichia coli O111:H- str.
           11128]
 gi|293433627|ref|ZP_06662055.1| trpH [Escherichia coli B088]
 gi|307137903|ref|ZP_07497259.1| hypothetical protein EcolH7_07192 [Escherichia coli H736]
 gi|307309980|ref|ZP_07589630.1| PHP domain protein [Escherichia coli W]
 gi|331641824|ref|ZP_08342959.1| protein TrpH [Escherichia coli H736]
 gi|331677044|ref|ZP_08377740.1| protein TrpH [Escherichia coli H591]
 gi|3025078|sp|P77766|TRPH_ECOLI RecName: Full=Protein trpH
 gi|1742058|dbj|BAA14800.1| conserved hypothetical protein [Escherichia coli str. K12 substr.
           W3110]
 gi|1787520|gb|AAC74348.1| conserved protein [Escherichia coli str. K-12 substr. MG1655]
 gi|169755298|gb|ACA77997.1| PHP domain protein [Escherichia coli ATCC 8739]
 gi|169888778|gb|ACB02485.1| conserved protein [Escherichia coli str. K-12 substr. DH10B]
 gi|190903310|gb|EDV63031.1| putative phosphoesterase [Escherichia coli B7A]
 gi|192931793|gb|EDV84393.1| putative phosphoesterase [Escherichia coli E22]
 gi|192956738|gb|EDV87193.1| putative phosphoesterase [Escherichia coli E110019]
 gi|194416151|gb|EDX32417.1| putative phosphoesterase [Escherichia coli B171]
 gi|218351569|emb|CAU97281.1| conserved hypothetical protein [Escherichia coli 55989]
 gi|238860470|gb|ACR62468.1| conserved protein [Escherichia coli BW2952]
 gi|257753613|dbj|BAI25115.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368]
 gi|257758761|dbj|BAI30258.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009]
 gi|257764071|dbj|BAI35566.1| conserved predicted protein [Escherichia coli O111:H- str. 11128]
 gi|260449604|gb|ACX40026.1| PHP domain protein [Escherichia coli DH1]
 gi|291324446|gb|EFE63868.1| trpH [Escherichia coli B088]
 gi|306909698|gb|EFN40192.1| PHP domain protein [Escherichia coli W]
 gi|309701564|emb|CBJ00871.1| putative phosphoesterase [Escherichia coli ETEC H10407]
 gi|315060517|gb|ADT74844.1| conserved protein [Escherichia coli W]
 gi|315135902|dbj|BAJ43061.1| hypothetical protein ECDH1ME8569_1205 [Escherichia coli DH1]
 gi|320199301|gb|EFW73892.1| hypothetical protein ECoL_03400 [Escherichia coli EC4100B]
 gi|323378920|gb|ADX51188.1| PHP domain protein [Escherichia coli KO11]
 gi|323937587|gb|EGB33855.1| PHP domain-containing protein [Escherichia coli E1520]
 gi|323942380|gb|EGB38550.1| PHP domain-containing protein [Escherichia coli E482]
 gi|323947453|gb|EGB43457.1| PHP domain-containing protein [Escherichia coli H120]
 gi|324117541|gb|EGC11447.1| PHP domain-containing protein [Escherichia coli E1167]
 gi|331038622|gb|EGI10842.1| protein TrpH [Escherichia coli H736]
 gi|331075733|gb|EGI47031.1| protein TrpH [Escherichia coli H591]
          Length = 293

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 130 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLAALARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|257065918|ref|YP_003152174.1| PHP domain-containing protein [Anaerococcus prevotii DSM 20548]
 gi|256797798|gb|ACV28453.1| PHP domain protein [Anaerococcus prevotii DSM 20548]
          Length = 276

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +  L  H+++S  +G L ++ +L      +   +AITD +      E  +KA   GI+ +
Sbjct: 5  YADLHSHTNHS--DGLLEIDELLKLAQEAKIEVLAITDHDTTDQYEEIREKAKEIGIRTV 62

Query: 71 IGCQLDI 77
           G ++  
Sbjct: 63 KGVEISC 69


>gi|82544280|ref|YP_408227.1| enzyme [Shigella boydii Sb227]
 gi|81245691|gb|ABB66399.1| putative enzymes [Shigella boydii Sb227]
          Length = 293

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 78/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQQIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W     T  +I  
Sbjct: 130 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQTIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLTTLARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|320187504|gb|EFW62190.1| hypothetical protein SGF_00294 [Shigella flexneri CDC 796-83]
          Length = 293

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQQIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 130 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLTTLARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|241759417|ref|ZP_04757521.1| PHP domain protein [Neisseria flavescens SK114]
 gi|241320199|gb|EER56532.1| PHP domain protein [Neisseria flavescens SK114]
          Length = 278

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++     +    +A+TD ++     E   +A   G+  + G 
Sbjct: 4   LHCHSTVS--DGMLSPTEVVRLARQNGCTLLALTDHDHTGGLAEARTEADTLGLPFVNGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
           ++ +                       LL    +G  RL  L S
Sbjct: 62  EISVTWHGRTIHIVGLDFDEHNEALQNLLAEVRKG--RLKRLES 103


>gi|324113138|gb|EGC07113.1| PHP domain-containing protein [Escherichia fergusonii B253]
          Length = 293

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAKLIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 130 AQRLAQGGAVTRGHFARFLVECGKASSIADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|282891350|ref|ZP_06299852.1| hypothetical protein pah_c050o149 [Parachlamydia acanthamoebae
          str. Hall's coccus]
 gi|281498847|gb|EFB41164.1| hypothetical protein pah_c050o149 [Parachlamydia acanthamoebae
          str. Hall's coccus]
          Length = 280

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 10/71 (14%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPI 70
            HS+ S  +G  S   ++D         ++ITD ++    +E  Q     A   GI+ +
Sbjct: 9  HCHSTCS--DGTCSPEELVDIAFKSGLKGLSITDHDS----VEAYQSAVEPAAKLGIKLL 62

Query: 71 IGCQLDIDMQD 81
           G +   +   
Sbjct: 63 SGVEFSAEQDS 73


>gi|170681023|ref|YP_001743921.1| putative phosphoesterase [Escherichia coli SMS-3-5]
 gi|170518741|gb|ACB16919.1| putative phosphoesterase [Escherichia coli SMS-3-5]
          Length = 293

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVRRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 130 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|149907889|ref|ZP_01896557.1| putative metal-dependent phosphoesterase [Moritella sp. PE36]
 gi|149808895|gb|EDM68826.1| putative metal-dependent phosphoesterase [Moritella sp. PE36]
          Length = 308

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--KACAAGIQPII 71
          L  H++ S  +G+LS   ++ +    +    AITD +      E      A A  I  I 
Sbjct: 23 LHSHTTAS--DGSLSPAELVQRAVEHRVDVFAITDHDTTNGLQEAHDTIAAHALPITLIN 80

Query: 72 GCQLDIDMQDN 82
          G ++  + Q++
Sbjct: 81 GVEVSTNWQNH 91


>gi|332178530|gb|AEE14219.1| PHP domain protein [Thermodesulfobium narugense DSM 14796]
          Length = 223

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL 56
          L VH+++S  +  +S++ +  K        IAITD N +  A+
Sbjct: 7  LHVHTNFS-KDSNISIDELYKKSILSGINVIAITDHNTVKGAM 48


>gi|284007496|emb|CBA72977.1| conserved hypothetical protein [Arsenophonus nasoniae]
          Length = 285

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          L  H+  S  +G L+   ++D+        +AITD + +   L   Q
Sbjct: 14 LHSHTKAS--DGDLTPVELVDRAVLMGVDVLAITDHDTVNGILPAWQ 58


>gi|255659413|ref|ZP_05404822.1| putative PHP domain protein [Mitsuokella multacida DSM 20544]
 gi|260848375|gb|EEX68382.1| putative PHP domain protein [Mitsuokella multacida DSM 20544]
          Length = 299

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VHS  S  +G+ + +++          A A+TD +N+    E +  A   GI  I G 
Sbjct: 6  LHVHSLVS--DGSYTPHDLARHAREVGLSAFALTDHDNIAGNEEAAAAAKEQGIDFINGM 63

Query: 74 QLDIDMQDNL 83
          +L  D     
Sbjct: 64 ELTADFMGRK 73


>gi|331662677|ref|ZP_08363600.1| protein TrpH [Escherichia coli TA143]
 gi|331061099|gb|EGI33063.1| protein TrpH [Escherichia coli TA143]
          Length = 293

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 78/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAISPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 130 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F + +GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHYGDAMEVAQCQQSPNER---TQLATLARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|148263726|ref|YP_001230432.1| phosphotransferase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146397226|gb|ABQ25859.1| PHP C-terminal domain protein [Geobacter uraniireducens Rf4]
          Length = 577

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 70/238 (29%), Gaps = 32/238 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT----NNLFSALEFSQKACAAGIQP 69
           L VHS +S  +G  ++  ++    A     +AITD                 A    I  
Sbjct: 340 LHVHSRWS--DGGHTIEELVAAAKARGLSYLAITDHSQGLGVAHGLTVERLMAQKQEIAA 397

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSI-----VLLVSTAEGYQRLIELVSRMYLLDQ 124
           +        +    +M  +                +++ S   G+++  E ++       
Sbjct: 398 LNIQLTGFTILHGTEMDIKSDGSLDFPDQALKELDLVIASIHSGFKQTKEQITT------ 451

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                RI  +      +  +   TG   G        +  +V    +L      G  + +
Sbjct: 452 -----RIIKAMKNPYVSI-IAHPTGRLIGE------RDPYEVEMDDILRVAADTGTAIEI 499

Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           N    R           + A    +PLV   ++  +S+ D   + + +A         
Sbjct: 500 NAYPLRLD---LNDSHARRAKELGVPLVINTDTHSISQFDTLPYGIAIARRAWLEKGD 554


>gi|220931411|ref|YP_002508319.1| DNA polymerase X family protein [Halothermothrix orenii H 168]
 gi|219992721|gb|ACL69324.1| DNA polymerase X family protein [Halothermothrix orenii H 168]
          Length = 573

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HSSYS  +G  S+  I++         +AITD 
Sbjct: 342 LHIHSSYS--DGGFSIREIIEAARKKGYEYLAITDH 375


>gi|309789074|ref|ZP_07683669.1| PHP domain protein [Shigella dysenteriae 1617]
 gi|308923345|gb|EFP68857.1| PHP domain protein [Shigella dysenteriae 1617]
          Length = 286

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 5   LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 62

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 63  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEG 122

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 123 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 182

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 183 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 239

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 240 HLWASQGSDFHQPCPW 255


>gi|261821580|ref|YP_003259686.1| PHP domain protein [Pectobacterium wasabiae WPP163]
 gi|261605593|gb|ACX88079.1| PHP domain protein [Pectobacterium wasabiae WPP163]
          Length = 290

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 2  TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          +Q +   P +  L  H++ S  +G L+   ++ +    +   +AITD +      E    
Sbjct: 5  SQPISSFPLY-DLHSHTTAS--DGLLTPTALVSRAVDMRVSVLAITDHDTTAGLEEARNA 61

Query: 62 ACAAGIQ 68
              G+ 
Sbjct: 62 IAQHGLP 68


>gi|118620043|ref|YP_908375.1| hypothetical protein MUL_5029 [Mycobacterium ulcerans Agy99]
 gi|118572153|gb|ABL06904.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
          Length = 335

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS +S  +G+  +  ++D  AA      A+TD 
Sbjct: 100 LHLHSEWS--DGSAPIEELMDTAAALGHEYCALTDH 133


>gi|89074054|ref|ZP_01160555.1| putative metal-dependent phosphoesterase [Photobacterium sp. SKA34]
 gi|89050192|gb|EAR55703.1| putative metal-dependent phosphoesterase [Photobacterium sp. SKA34]
          Length = 296

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--KACAAGIQPII 71
           L  H++ S  +G L+   ++ +    +   +AITD + +    E     +  A  I  I 
Sbjct: 5   LHSHTTAS--DGRLTPQELVRRAVDMRVDILAITDHDTVAGLHEAHTVIEQEALPITLIN 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
           G ++    Q N  +   G    P  P++V  + 
Sbjct: 63  GIEISTVWQ-NFDIHIVGLNIDPQNPTLVAFIE 94


>gi|157160771|ref|YP_001458089.1| putative phosphoesterase [Escherichia coli HS]
 gi|188494841|ref|ZP_03002111.1| PHP domain protein [Escherichia coli 53638]
 gi|312971454|ref|ZP_07785629.1| PHP domain protein [Escherichia coli 1827-70]
 gi|157066451|gb|ABV05706.1| putative phosphoesterase [Escherichia coli HS]
 gi|188490040|gb|EDU65143.1| PHP domain protein [Escherichia coli 53638]
 gi|310336051|gb|EFQ01251.1| PHP domain protein [Escherichia coli 1827-70]
 gi|315619344|gb|EFU99888.1| PHP domain protein [Escherichia coli 3431]
 gi|323153302|gb|EFZ39560.1| PHP domain protein [Escherichia coli EPECa14]
 gi|323162373|gb|EFZ48228.1| PHP domain protein [Escherichia coli E128010]
 gi|323172378|gb|EFZ58015.1| PHP domain protein [Escherichia coli LT-68]
 gi|323179782|gb|EFZ65343.1| PHP domain protein [Escherichia coli 1180]
          Length = 286

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 5   LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 62

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 63  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEG 122

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 123 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 182

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 183 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLAALARQH 239

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 240 HLWASQGSDFHQPCPW 255


>gi|325294733|ref|YP_004281247.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065181|gb|ADY73188.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 574

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +G  ++  I  K        IAITD 
Sbjct: 338 LHIHSNWS--DGVSTIEEIALKALKMGYKYIAITDH 371


>gi|331652303|ref|ZP_08353322.1| protein TrpH [Escherichia coli M718]
 gi|331050581|gb|EGI22639.1| protein TrpH [Escherichia coli M718]
          Length = 293

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQQIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 130 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHDGDAMEVAQCQQSPNER---TQLATLARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|227494911|ref|ZP_03925227.1| PHP domain protein [Actinomyces coleocanis DSM 15436]
 gi|226831363|gb|EEH63746.1| PHP domain protein [Actinomyces coleocanis DSM 15436]
          Length = 284

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VHS  S  +G  +   ++ K        IA+TD +      E + +    G+  + G 
Sbjct: 9  LHVHSHLS--DGTDTPTELMQKAQEANLDVIALTDHDITSGWEEAASQVQTTGVSLVRGM 66

Query: 74 QLDIDMQ 80
          +L    Q
Sbjct: 67 ELSCAWQ 73


>gi|293375266|ref|ZP_06621548.1| PHP domain protein [Turicibacter sanguinis PC909]
 gi|325842096|ref|ZP_08167598.1| PHP domain protein [Turicibacter sp. HGF1]
 gi|292646022|gb|EFF64050.1| PHP domain protein [Turicibacter sanguinis PC909]
 gi|325489730|gb|EGC92087.1| PHP domain protein [Turicibacter sp. HGF1]
          Length = 274

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L +H+ YS  +G+ S   ++          I++TD N + +  EF        +  ++
Sbjct: 3  VDLHMHTYYS--DGSFSPREMVQLAKKKGLGLISVTDHNTIEAHEEFEAACQELEMNYVV 60

Query: 72 GCQLDI 77
          G +LD 
Sbjct: 61 GVELDC 66


>gi|169840066|ref|ZP_02873254.1| DNA polymerase III subunit alpha [candidate division TM7
           single-cell isolate TM7a]
          Length = 58

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 21/50 (42%)

Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
           +F     +I   L A+ G+G   A +I+       F S+ED   R    K
Sbjct: 6   NFHNTGWKIRMPLIAMDGLGDAVAENIVSERKKDSFLSIEDLVKRTKLNK 55


>gi|218961330|ref|YP_001741105.1| putative PHP domain protein [Candidatus Cloacamonas
          acidaminovorans]
 gi|167729987|emb|CAO80899.1| putative PHP domain protein [Candidatus Cloacamonas
          acidaminovorans]
          Length = 287

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          V+L +H++ S  +G +S   ++ +        I+ITD + 
Sbjct: 12 VNLHLHTNVS--DGNISPKELIKRAQEIGLDLISITDHDT 49


>gi|197121779|ref|YP_002133730.1| PHP domain protein [Anaeromyxobacter sp. K]
 gi|196171628|gb|ACG72601.1| PHP domain protein [Anaeromyxobacter sp. K]
          Length = 267

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 14 LQVHSSYSLLEG-ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          L VHS ++   G AL+  +++ +        +A TD + L    E    A   G+  + G
Sbjct: 5  LHVHSHHT--RGCALAPRDVVRRAREAGLDGVAFTDHDTLEGLEEIRAAAREEGLLALCG 62

Query: 73 CQLDIDMQD 81
           ++  D   
Sbjct: 63 VEVTTDRGH 71


>gi|303246490|ref|ZP_07332769.1| PHP domain protein [Desulfovibrio fructosovorans JJ]
 gi|302492200|gb|EFL52075.1| PHP domain protein [Desulfovibrio fructosovorans JJ]
          Length = 221

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+++S  +G L  + +  + A     A+A+TD 
Sbjct: 4  LHTHTTFS--DGELIPSELARRAAKAGYRAMAMTDH 37


>gi|90581220|ref|ZP_01237018.1| putative metal-dependent phosphoesterase [Vibrio angustum S14]
 gi|90437591|gb|EAS62784.1| putative metal-dependent phosphoesterase [Vibrio angustum S14]
          Length = 296

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
          L  H++ S  +G L+   ++ +    +   +AITD + +    E  
Sbjct: 5  LHSHTTAS--DGRLTPQELVRRAVDMRVDILAITDHDTVAGLHEAH 48


>gi|194437044|ref|ZP_03069143.1| putative phosphoesterase [Escherichia coli 101-1]
 gi|253773737|ref|YP_003036568.1| PHP domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161345|ref|YP_003044453.1| hypothetical protein ECB_01240 [Escherichia coli B str. REL606]
 gi|194424027|gb|EDX40015.1| putative phosphoesterase [Escherichia coli 101-1]
 gi|242377043|emb|CAQ31767.1| conserved protein [Escherichia coli BL21(DE3)]
 gi|253324781|gb|ACT29383.1| PHP domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973246|gb|ACT38917.1| hypothetical protein ECB_01240 [Escherichia coli B str. REL606]
 gi|253977460|gb|ACT43130.1| hypothetical protein ECD_01240 [Escherichia coli BL21(DE3)]
 gi|284921147|emb|CBG34213.1| putative phosphoesterase [Escherichia coli 042]
 gi|323962566|gb|EGB58146.1| PHP domain-containing protein [Escherichia coli H489]
 gi|323973494|gb|EGB68680.1| PHP domain-containing protein [Escherichia coli TA007]
          Length = 293

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 130 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|134046445|ref|YP_001097930.1| phosphotransferase domain-containing protein [Methanococcus
          maripaludis C5]
 gi|132664070|gb|ABO35716.1| PHP C-terminal domain protein [Methanococcus maripaludis C5]
          Length = 299

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 15 QVHSSYS---------LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           +H+ YS           +       ++    A+    IA+TD N +  ALE  +     
Sbjct: 11 HIHTKYSGMMKYMGLKFPDSVEEPLKVMKCAKANGMDIIAVTDHNTIKGALETKKYEKEF 70

Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTP 92
          GI+ ++G ++     + L +      P
Sbjct: 71 GIEVVVGSEIMSKDGEILGLFLNDDIP 97


>gi|86158909|ref|YP_465694.1| phosphoesterase, PHP-like [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775420|gb|ABC82257.1| phosphoesterase, PHP-like protein [Anaeromyxobacter dehalogenans
          2CP-C]
          Length = 255

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 14 LQVHSSYSLLEG-ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          L VHS ++   G AL+   ++ +        +A TD + L    E    A   G+  + G
Sbjct: 5  LHVHSHHT--RGCALAPREVVRRAREAGLDGVAFTDHDTLEGLEEIRAAAREEGLLALCG 62

Query: 73 CQLDIDMQD 81
           ++  D   
Sbjct: 63 VEVTTDRGH 71


>gi|21227996|ref|NP_633918.1| DNA polymerase beta [Methanosarcina mazei Go1]
 gi|20906424|gb|AAM31590.1| DNA polymerase beta [Methanosarcina mazei Go1]
          Length = 584

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+ YS  EGA SL  +++K  +     IA+TD 
Sbjct: 352 LHMHTDYS--EGAESLETMVEKAESMGYEYIAVTDH 385


>gi|329945969|ref|ZP_08293656.1| PHP domain protein [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528417|gb|EGF55395.1| PHP domain protein [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 281

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            HS+ S  +G  S   ++ + A      + +TD + +    E +      G+  + G +
Sbjct: 6  HTHSACS--DGTDSPAELMARAAGSGLDVVGLTDHDTMAGWDEAASAVPVTGVTLLRGTE 63

Query: 75 LDIDMQ 80
          +     
Sbjct: 64 ISCAAD 69


>gi|86609265|ref|YP_478027.1| phosphotransferase domain-containing protein [Synechococcus sp.
          JA-2-3B'a(2-13)]
 gi|86557807|gb|ABD02764.1| PHP domain protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 222

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +H+  S  +G +   ++ ++        +AITD + L       ++A A   +P
Sbjct: 37 HLHTRCS--DGQMDPVDLAEQARRHGLKGLAITDHHTLKG----YERARAHLDRP 85


>gi|323187497|gb|EFZ72806.1| PHP domain protein [Escherichia coli RN587/1]
          Length = 286

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 78/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 5   LHSHTTVS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 62

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 63  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEG 122

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W     +  +I  
Sbjct: 123 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQSIDVIHH 182

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 183 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 239

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 240 HLWASQGSDFHQPCPW 255


>gi|212696922|ref|ZP_03305050.1| hypothetical protein ANHYDRO_01485 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676212|gb|EEB35819.1| hypothetical protein ANHYDRO_01485 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 368

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L++H+  + L+G + ++ +  ++ +    A  ITDT  L +  +   K     I+ + 
Sbjct: 288 VELEIHTKMTNLDGFVDMDELSKRLKSWGHTACGITDTETLQALPDMYDKLGKNDIKMLA 347

Query: 72  GC 73
           G 
Sbjct: 348 GA 349


>gi|289522113|ref|ZP_06438967.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504643|gb|EFD25807.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 296

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L VHS+ S  +G LS ++++ +        +++TD +      EF +      +  + 
Sbjct: 3  VDLHVHSTAS--DGTLSPSDVVIRAKKKAISLLSLTDHDTTDGLQEFEESCRKHNVPGLP 60

Query: 72 GCQLDIDMQDNLKMTNQG 89
          G +L  +  D++ +   G
Sbjct: 61 GIELSAEYYDDVHILGYG 78


>gi|229817190|ref|ZP_04447472.1| hypothetical protein BIFANG_02449 [Bifidobacterium angulatum DSM
          20098]
 gi|229784979|gb|EEP21093.1| hypothetical protein BIFANG_02449 [Bifidobacterium angulatum DSM
          20098]
          Length = 293

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
            H+ +S  +G  +   ++     +    IAITD +    
Sbjct: 18 HCHTVFS--DGTETPQGMVSLALRNGLDGIAITDHDTSAG 55


>gi|147669993|ref|YP_001214811.1| phosphotransferase domain-containing protein [Dehalococcoides sp.
          BAV1]
 gi|146270941|gb|ABQ17933.1| PHP C-terminal domain protein [Dehalococcoides sp. BAV1]
          Length = 287

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
          V L +H++ S  +G  S  NI+ K A      IAI D +NL       Q A   
Sbjct: 5  VDLHIHTTVS--DGVHSPENIIAKAAKVHMEYIAICDHDNLDGIGLAIQTARKY 56


>gi|315647907|ref|ZP_07901008.1| putative phosphoesterase [Paenibacillus vortex V453]
 gi|315276553|gb|EFU39896.1| putative phosphoesterase [Paenibacillus vortex V453]
          Length = 284

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  H++ S  +G+LS   I+     +    +AIT+ +      E  +    +G++ I 
Sbjct: 3  VDLHCHTNIS--DGSLSFGEIVALAKQEGVGYLAITNHDTTKGLGEMVEAGVKSGVEIIP 60

Query: 72 GCQLDIDMQDNLKMTN 87
          G ++     +  +  +
Sbjct: 61 GMEISAYDFERNRRVH 76


>gi|294339975|emb|CAZ88338.1| putative Phosphoesterase PHP family [Thiomonas sp. 3As]
          Length = 283

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 1  LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          ++    ++P    L  HS+ S  +G L+   +  +  A+     A+TD + L    E  Q
Sbjct: 1  MSASFARNPD---LHCHSTVS--DGTLTPAALAQRAHANGVDLWALTDHDELGGLTEARQ 55

Query: 61 KACAAGIQPIIGC 73
           A + G++ + G 
Sbjct: 56 SAESLGLRFVTGV 68


>gi|282897548|ref|ZP_06305548.1| PHP-like protein [Raphidiopsis brookii D9]
 gi|281197471|gb|EFA72367.1| PHP-like protein [Raphidiopsis brookii D9]
          Length = 228

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 25/130 (19%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           +  P   +   H+ +S  +G L  + ++++        +AITD ++    +E  +KA   
Sbjct: 25  QSCPKLFNFHAHTVFS--DGKLHPHILMEQAITIGLKGLAITDHHS----VEGYEKAK-- 76

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS-TAEGYQRLIELVSRMYLLDQ 124
                           N     Q   PF  VP +   V   AE     + ++   + +  
Sbjct: 77  ----------------NWLEEWQWHHPFSPVPHLWSGVEINAELLDVEVHILGYGFEVGH 120

Query: 125 GKQSVRICLS 134
            +    +   
Sbjct: 121 HRMKPYLQRE 130


>gi|224583787|ref|YP_002637585.1| hypothetical protein SPC_2008 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224468314|gb|ACN46144.1| hypothetical protein SPC_2008 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 293

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 8/124 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G     I 
Sbjct: 16  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 73

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQ 127
            +    +  + + ++   N           +       +   RLI E + + ++    + 
Sbjct: 74  GVEISTVWENHEIHIVGLNIDIAHPAMRDFLAQQTQRRQARGRLIAERLEKAHIPGAWEG 133

Query: 128 SVRI 131
           ++R+
Sbjct: 134 ALRL 137


>gi|167947395|ref|ZP_02534469.1| DNA polymerase III, alpha subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 35

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRV 872
           + AIKGVG +    I+ E  A+ PF  L  FC R+
Sbjct: 1   MGAIKGVGESAIESIVLERDANGPFADLFSFCRRI 35


>gi|188588182|ref|YP_001921951.1| PHP domain protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188498463|gb|ACD51599.1| PHP domain protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 277

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +H+S S  +G LS   ++ +   +    +AITD + L       +     G+  I 
Sbjct: 7  HIHTSSS--DGLLSPTEVVKRAKENSVSYLAITDHDTLSGLDAGIKCGKELGVTIIP 61


>gi|289579329|ref|YP_003477956.1| PHP domain protein [Thermoanaerobacter italicus Ab9]
 gi|289529042|gb|ADD03394.1| PHP domain protein [Thermoanaerobacter italicus Ab9]
          Length = 573

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH++YS  +GA +L  +++         I ITD 
Sbjct: 340 HVHTTYS--DGANTLIEMIETARKLGYKYIGITDH 372


>gi|320085780|emb|CBY95556.1| Protein trpH [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 293

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G     I 
Sbjct: 16  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 73

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQ 127
            +    +  + + ++   N           +       +   RLI E + + ++    + 
Sbjct: 74  GVEISTVWENHEIHIVGLNIDIAHPAMRDFLAQQTQRRQARGRLIAERLEKAHIPGAWEG 133

Query: 128 SVRI 131
           ++R+
Sbjct: 134 ALRL 137


>gi|207856766|ref|YP_002243417.1| hypothetical protein SEN1312 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|206708569|emb|CAR32890.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 293

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G     I 
Sbjct: 16  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 73

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQ 127
            +    +  + + ++   N           +       +   RLI E + + ++    + 
Sbjct: 74  GVEISTVWENHEIHIVGLNIDIAHPAMRDFLAQQTQRRQARGRLIAERLEKAHIPGAWEG 133

Query: 128 SVRI 131
           ++R+
Sbjct: 134 ALRL 137


>gi|326384545|ref|ZP_08206224.1| PHP domain-containing protein [Gordonia neofelifaecis NRRL
          B-59395]
 gi|326196679|gb|EGD53874.1| PHP domain-containing protein [Gordonia neofelifaecis NRRL
          B-59395]
          Length = 288

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  H+++S  +G  S   +L          IA+TD + 
Sbjct: 9  LHTHTAFS--DGTDSPAQLLAAAREAGLTTIALTDHDT 44


>gi|289191688|ref|YP_003457629.1| PHP domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938138|gb|ADC68893.1| PHP domain protein [Methanocaldococcus sp. FS406-22]
          Length = 289

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 9/93 (9%)

Query: 14 LQVHSSYS---------LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          L +H+ YS           +      NIL          IAITD N +   +E  +    
Sbjct: 5  LHIHTKYSGIGKFWKLKFPDSVEEPRNILKVAKKRGIDIIAITDHNTIKGGIETKKLEKE 64

Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G++ IIG ++     + + +      P    P
Sbjct: 65 FGVEVIIGSEIMTTEGEIIGLFLNEDIPKGLTP 97


>gi|205352605|ref|YP_002226406.1| hypothetical protein SG1393 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272386|emb|CAR37266.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326627669|gb|EGE34012.1| PHP domain-containing protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 293

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G     I 
Sbjct: 16  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 73

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQ 127
            +    +  + + ++   N           +       +   RLI E + + ++    + 
Sbjct: 74  GVEISTVWENHEIHIVGLNIDIAHPAMRDFLAQQTQRRQARGRLIAERLEKAHIPGAWEG 133

Query: 128 SVRI 131
           ++R+
Sbjct: 134 ALRL 137


>gi|297545480|ref|YP_003677782.1| PHP domain protein [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296843255|gb|ADH61771.1| PHP domain protein [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 570

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH++YS  +GA +L  +++         I ITD 
Sbjct: 340 HVHTTYS--DGANTLIEMIETARKLGYKYIGITDH 372


>gi|281419901|ref|ZP_06250900.1| conserved hypothetical protein [Prevotella copri DSM 18205]
 gi|281406028|gb|EFB36708.1| conserved hypothetical protein [Prevotella copri DSM 18205]
          Length = 166

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 2/105 (1%)

Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392
             +   R+  EL V A +  +   + + D +   K+       P +G  AGS  AY L +
Sbjct: 36  TPEIETRIKEELLVFANLGIAKDLMTLRDVMDKVKEQLGYSAEPSKGILAGSYVAYCLGL 95

Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
              +P+      E   +          I +  + R+EV+ +++  
Sbjct: 96  EPSNPMVTGKEIEPK-DFQVTLPLGLTICYDNEIRNEVVNWMKEH 139


>gi|170727253|ref|YP_001761279.1| phosphotransferase domain-containing protein [Shewanella woodyi
          ATCC 51908]
 gi|169812600|gb|ACA87184.1| PHP domain protein [Shewanella woodyi ATCC 51908]
          Length = 287

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
          L  H++ S  +G L+ + ++++   +     AITD +      E  
Sbjct: 10 LHSHTTAS--DGMLTPSELVERAIGNGVEMFAITDHDTTAGLAEAH 53


>gi|332039132|gb|EGI75554.1| PHP domain-containing protein [Hylemonella gracilis ATCC 19624]
          Length = 285

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 18/130 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +G L+   +  +         A+TD + +         A + G+  + G 
Sbjct: 9   LHCHSVAS--DGTLTPEALAQRAKLAGVELWALTDHDEVSGQQRAMAAARSQGLPYLTGV 66

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++ I         +     F    ++++     EG ++               +  R   
Sbjct: 67  EISITFAGQT--VHIVGLGFDAADTLLV-----EGLRQ---------TRGGRGERAREMS 110

Query: 134 SWLQEIGTEG 143
             L + G  G
Sbjct: 111 EQLAQAGIPG 120


>gi|289523831|ref|ZP_06440685.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502929|gb|EFD24093.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 197

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L VHS+ S  +G LS ++++ +        +++TD +      EF +      +  + 
Sbjct: 3  VDLHVHSTAS--DGTLSPSDVVIRAKKRAISLLSLTDHDTTDGLQEFEESCRKHNLPGLP 60

Query: 72 GCQLDIDMQDNLKMTNQG 89
          G +L  +  D++ +   G
Sbjct: 61 GIELSAEYYDDVHILGYG 78


>gi|323220710|gb|EGA05155.1| hypothetical protein SEEM0047_22880 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
          Length = 293

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G     I 
Sbjct: 16  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 73

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQ 127
            +    +  + + ++   N           +       +   RLI E + + ++    + 
Sbjct: 74  GVEISTVWENHEIHIVGLNIDIAHPAMRDFLAQQTQRRQARGRLIAERLEKAHIPGAWEG 133

Query: 128 SVRI 131
           ++R+
Sbjct: 134 ALRL 137


>gi|169842583|ref|ZP_02875688.1| DNA polymerase III, subunit alpha [candidate division TM7
           single-cell isolate TM7a]
          Length = 58

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              RI    L+E   EGL++L+  +SG I      ++ + A++    +K +    + +
Sbjct: 1   YKPRIDHEILEEY-NEGLLVLSACASGEIGENLRDDNYEEAKRIASWYKSVLVIDIIL 57


>gi|297616967|ref|YP_003702126.1| PHP domain protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297144804|gb|ADI01561.1| PHP domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 348

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           +H+ YS  +G+ S++ +++  A      I ITD N L
Sbjct: 9  HLHTEYS--DGSGSVDRVVEAAARAGLDFIVITDHNTL 44


>gi|282853711|ref|ZP_06263048.1| PHP domain protein [Propionibacterium acnes J139]
 gi|282583164|gb|EFB88544.1| PHP domain protein [Propionibacterium acnes J139]
          Length = 286

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 70/260 (26%), Gaps = 51/260 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  S   ++ K A      +A+TD +      E        G++ + G 
Sbjct: 5   LHTHSTIS--DGTDSPTRLMMKAAGSGLDVVALTDHDTFDGLEEAQAAGQRFGVRLLPGF 62

Query: 74  QLDIDMQDN-LKMTNQGKTPFPTVPSIVLLVSTAEGYQRL---IELVSRMYL-------- 121
           ++   +    + +   G  P   V    L  + A    RL    + +S   +        
Sbjct: 63  EMTCHIGGRDVHLLGYGARPDDPVLGRELQATRASRAGRLDAICQRLSDAGMTVTIDDVH 122

Query: 122 --------------------LDQGKQSVRICLSWLQE-------------IGTEGLIMLT 148
                                   +        WL +                  LI   
Sbjct: 123 RTSGSASSLGRPHVADAMVAKGYVEDRDEAFRDWLSDGKPAYVPRRSVALEEGIDLIHNA 182

Query: 149 GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           GG +             +  + + +       D + V  Q H   D+     +  L    
Sbjct: 183 GGVAVLAHPWGRGAQQDLTPQVIASLSAYHQLDGIEVEHQDH---DQVARRMLFDLGGRL 239

Query: 208 ELPLVATNNSLFLSEEDYEA 227
            L     ++     + D+E 
Sbjct: 240 GLVRTGASDYHGSGKRDHEL 259


>gi|169335021|ref|ZP_02862214.1| hypothetical protein ANASTE_01427 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169257759|gb|EDS71725.1| hypothetical protein ANASTE_01427 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 274

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE 57
          L VH+  S  +G+ +++ ++    A     +AITD + +  A E
Sbjct: 6  LHVHTIMS--DGSNTIDELIPMCKARGVDTLAITDHDTI-GAFE 46


>gi|204927588|ref|ZP_03218789.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204322930|gb|EDZ08126.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 282

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G     I 
Sbjct: 5   LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQ 127
            +    +  + + ++   N           +       +   RLI E + + ++    + 
Sbjct: 63  GVEISTVWENHEIHIVGLNIDIAHPAMRDFLAQQTQRRQARGRLIAERLEKAHIPGAWEG 122

Query: 128 SVRI 131
           ++R+
Sbjct: 123 ALRL 126


>gi|56413353|ref|YP_150428.1| hypothetical protein SPA1155 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362277|ref|YP_002141914.1| hypothetical protein SSPA1074 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56127610|gb|AAV77116.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093754|emb|CAR59228.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 293

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 8/124 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G     I 
Sbjct: 16  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 73

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQ 127
            +    +  + + ++   N           +       +   RLI E + + ++    + 
Sbjct: 74  GVEISTVWENHEIHIVGLNIDIAHPAMRDFLAQQTQRRQARGRLIAERLEKAHIPGAWEG 133

Query: 128 SVRI 131
           ++R+
Sbjct: 134 ALRL 137


>gi|145298416|ref|YP_001141257.1| PHP family metal-dependent phosphoesterase [Aeromonas salmonicida
          subsp. salmonicida A449]
 gi|142851188|gb|ABO89509.1| metal-dependent phosphoesterase, PHP family [Aeromonas
          salmonicida subsp. salmonicida A449]
          Length = 293

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G LS  +++ + A  Q   +A+TD + L     +  + +A    ++ + 
Sbjct: 5  LHCHTTAS--DGVLSPADLVRRAAEKQVEVLAVTDHDTLDGLDEVRRTIEAEQLPLRLVS 62

Query: 72 GCQLDIDMQDN 82
          G ++    + +
Sbjct: 63 GVEISTGWEHH 73


>gi|50842808|ref|YP_056035.1| metal-dependent phosphoesterase [Propionibacterium acnes KPA171202]
 gi|50840410|gb|AAT83077.1| predicted metal-dependent phosphoesterase [Propionibacterium acnes
           KPA171202]
          Length = 286

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 70/260 (26%), Gaps = 51/260 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  S   ++ K A      +A+TD +      E        G++ + G 
Sbjct: 5   LHTHSTIS--DGTDSPTRLMMKAAGSGLDVVALTDHDTFDGLEEAQAAGQRFGVRLLPGF 62

Query: 74  QLDIDMQDN-LKMTNQGKTPFPTVPSIVLLVSTAEGYQRL---IELVSRMYL-------- 121
           ++   +    + +   G  P   V    L  + A    RL    + +S   +        
Sbjct: 63  EMTCHIGGRDVHLLGYGARPDDPVLGRELQATRASRAGRLDAICQRLSDAGMTVTIDDVH 122

Query: 122 --------------------LDQGKQSVRICLSWLQE-------------IGTEGLIMLT 148
                                   +        WL +                  LI   
Sbjct: 123 RTSGSASSLGRPHVADAMVAKGYVEDRDEAFRDWLSDGKPAYVPRRSVALEEGIDLIHNA 182

Query: 149 GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           GG +             +  + + +       D + V  Q H   D+     +  L    
Sbjct: 183 GGVAVLAHPWGRGAQQDLTPQVIASLSAYHQLDGIEVEHQDH---DQVARRMLFDLGGRL 239

Query: 208 ELPLVATNNSLFLSEEDYEA 227
            L     ++     + D+E 
Sbjct: 240 GLVRTGASDYHGSGKRDHEL 259


>gi|152967979|ref|YP_001363763.1| hypothetical protein Krad_4036 [Kineococcus radiotolerans SRS30216]
 gi|151362496|gb|ABS05499.1| PHP domain protein [Kineococcus radiotolerans SRS30216]
          Length = 381

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 27/91 (29%), Gaps = 6/91 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN----NLFSALEFSQKACAAGIQP 69
           L  H+  S  +G   L  +    A      +A+TD +             ++A    I  
Sbjct: 129 LHTHTDAS--DGGSPLAEMAATAAELGHEYLAVTDHSEGLKVAHGLDRARREAQLDQIAA 186

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           +        +   +++           P ++
Sbjct: 187 LAAPLAPFRLLSGIEVDIGRDGVLDCPPDLL 217


>gi|188533747|ref|YP_001907544.1| Protein TrpH [Erwinia tasmaniensis Et1/99]
 gi|188028789|emb|CAO96651.1| Protein TrpH [Erwinia tasmaniensis Et1/99]
          Length = 308

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 40/114 (35%), Gaps = 4/114 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+  S  +G L+   ++ +    +   +AITD +     +   +      +   +  
Sbjct: 21  LHSHTRAS--DGLLTPEQLVLRAVEQRVGVLAITDHDTTDGIIPAREAIARHQLPLRLIS 78

Query: 74  -QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
                 + +N ++   G       P ++  ++   G +RL         L++  
Sbjct: 79  GVEISTLWENHEIHIVGLGIDIAHPGMIAFLAGQAG-RRLARAQLIAERLEKAH 131


>gi|220916573|ref|YP_002491877.1| PHP domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954427|gb|ACL64811.1| PHP domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 266

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 14 LQVHSSYSLLEG-ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          L VHS ++   G AL+  +++ +        +A TD + L    E    A   G+  + G
Sbjct: 5  LHVHSHHT--RGCALAPRDVVRRAREAGLDGVAFTDHDTLEGLEEIRAAARDEGLVALCG 62

Query: 73 CQLDIDMQD 81
           ++  D   
Sbjct: 63 VEVTTDRGH 71


>gi|134097651|ref|YP_001103312.1| phosphotransferase domain-containing protein [Saccharopolyspora
          erythraea NRRL 2338]
 gi|133910274|emb|CAM00387.1| PHP C-terminal domain protein [Saccharopolyspora erythraea NRRL
          2338]
          Length = 292

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
          L  HS+ S  +G  + + ++    A     IA+TD +      E  +     
Sbjct: 7  LHTHSTES--DGTDTPSELVATAIAAGLDVIALTDHDTTAGWAEAERAVREH 56


>gi|294101300|ref|YP_003553158.1| PHP domain protein [Aminobacterium colombiense DSM 12261]
 gi|293616280|gb|ADE56434.1| PHP domain protein [Aminobacterium colombiense DSM 12261]
          Length = 275

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 83/263 (31%), Gaps = 32/263 (12%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+ L +HS+ S  +G ++   +  K  +      ++TD +       F +      ++ +
Sbjct: 3   FIDLHLHSTCS--DGTITPRALAFKAKSQGLSVASLTDHDTTEGVKAFLKTCARREVRGV 60

Query: 71  IGCQLDIDMQDNLK----MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            G +L  D    +       +     F      +        Y+ + + + R+ L     
Sbjct: 61  AGVELSADFHSVMHILGYRIDVDSPLFQKHMKHLREGRDERNYK-ICQKLQRLGLS---- 115

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               I +  +Q      +I     +   I + +  +     E+ L      +  R  ++ 
Sbjct: 116 ----ISIEEVQAEAQGEVIARPHIARVLIRKGYVQSMGAAFERYLGREAPAYVPRYRLSP 171

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDR 245
           Q           Q ++  +      V  +      +   E  D+L ++        +   
Sbjct: 172 Q-----------QCIETIHQAGGVAVLAHPVQTTDDY-GELVDILSSLKELGLWGMECLA 219

Query: 246 PRVTPD---HYLKNRSEMVSIFS 265
           P   P     YL+   EM  +F 
Sbjct: 220 PSHAPQQVFQYLRIAKEM-GLFP 241


>gi|219850371|ref|YP_002464804.1| PHP domain-containing protein [Chloroflexus aggregans DSM 9485]
 gi|219544630|gb|ACL26368.1| PHP domain protein [Chloroflexus aggregans DSM 9485]
          Length = 235

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 15/131 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAAD-QQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           L +H++ S  +G  S   +L  +A +     IAITD + L  AL   + A   GI  IIG
Sbjct: 10  LHIHTTAS--DGTASPEAVLSYVAEETDLRVIAITDHDTLEGALVARRLAPHYGIDVIIG 67

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG--------YQRLIELVSRMYLLDQ 124
           C++   +   L +  +   P     +  + +   +G        +  L+  V R +LL  
Sbjct: 68  CEISTAIGHVLALFIEQPIPAGLDLTTTVNLIHEQGGLAFAAHPFGTLVASVGRRHLLGP 127

Query: 125 GKQSVRICLSW 135
                RI L W
Sbjct: 128 E----RIDLDW 134


>gi|326796236|ref|YP_004314056.1| PHP domain protein [Marinomonas mediterranea MMB-1]
 gi|326547000|gb|ADZ92220.1| PHP domain protein [Marinomonas mediterranea MMB-1]
          Length = 284

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L +HS  S  +G  +   ++ +   +    +A+TD ++L    E   +A   G++ I 
Sbjct: 9  VDLHMHSLAS--DGVFAPAVLMQRAYENGVEVVALTDHDSLNGLDEARCEAVKLGMKFIN 66

Query: 72 GC 73
          G 
Sbjct: 67 GV 68


>gi|291008804|ref|ZP_06566777.1| phosphotransferase domain-containing protein [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 290

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
          L  HS+ S  +G  + + ++    A     IA+TD +      E  +     
Sbjct: 5  LHTHSTES--DGTDTPSELVATAIAAGLDVIALTDHDTTAGWAEAERAVREH 54


>gi|269102964|ref|ZP_06155661.1| putative metal-dependent phosphoesterase [Photobacterium damselae
          subsp. damselae CIP 102761]
 gi|268162862|gb|EEZ41358.1| putative metal-dependent phosphoesterase [Photobacterium damselae
          subsp. damselae CIP 102761]
          Length = 289

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL 56
          L  H++ S  +G L+   ++ +    +   +AITD + + +  
Sbjct: 5  LHTHTTAS--DGRLTPEELVKRAVERRVDVLAITDHDTVAALP 45


>gi|302871310|ref|YP_003839946.1| hypothetical protein COB47_0645 [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574169|gb|ADL41960.1| hypothetical protein COB47_0645 [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 433

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 2/80 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +H+ YS      S +  +   A    P   I D + +  A EF      AGI   IG +
Sbjct: 48  HIHTFYSF--SPYSPSKAIYMAAKSGLPTAGIMDHDTIAGAQEFMAAGKLAGIATTIGVE 105

Query: 75  LDIDMQDNLKMTNQGKTPFP 94
              D    L    +   P  
Sbjct: 106 CRADFSKTLLFGKKINNPDQ 125


>gi|294995166|ref|ZP_06800857.1| hypothetical protein Mtub2_11787 [Mycobacterium tuberculosis 210]
          Length = 311

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +G+  +  ++   AA      A+TD 
Sbjct: 76  LHLHSNWS--DGSAPIEEMMATAAALGHQYCALTDH 109


>gi|205359668|ref|ZP_02831544.2| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205343638|gb|EDZ30402.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
          Length = 282

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G     I 
Sbjct: 5   LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQ 127
            +    +  + + ++   N           +       +   RLI E + + ++    + 
Sbjct: 63  GVEISTVWENHEIHIVGLNIDIAHPAMRDFLAQQTQRRQARGRLIAERLEKAHIPGAWEG 122

Query: 128 SVRI 131
           ++R+
Sbjct: 123 ALRL 126


>gi|198245413|ref|YP_002215420.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197939929|gb|ACH77262.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326623167|gb|EGE29512.1| Polymerase and histidinol phosphatase, N-terminal domain protein
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
          Length = 282

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G     I 
Sbjct: 5   LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQ 127
            +    +  + + ++   N           +       +   RLI E + + ++    + 
Sbjct: 63  GVEISTVWENHEIHIVGLNIDIAHPAMRDFLAQQTQRRQARGRLIAERLEKAHIPGAWEG 122

Query: 128 SVRI 131
           ++R+
Sbjct: 123 ALRL 126


>gi|54026685|ref|YP_120927.1| hypothetical protein nfa47120 [Nocardia farcinica IFM 10152]
 gi|54018193|dbj|BAD59563.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 293

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 11/89 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  +   ++   AA     +AITD +      E    A   G+  + G 
Sbjct: 14  LHTHSTAS--DGTDTPAELVRHAAAAGLDVVAITDHDTTSGWAEA-VAALPQGMTLVRGM 70

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++             G+  +P    ++  
Sbjct: 71  EMSC--------IGLGEDGWPVPVHLLAY 91


>gi|194468714|ref|ZP_03074698.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205358289|ref|ZP_02655218.2| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194455078|gb|EDX43917.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205335358|gb|EDZ22122.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 282

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 8/124 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G     I 
Sbjct: 5   LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQ 127
            +    +  + + ++   N           +       +   RLI E + + ++    + 
Sbjct: 63  GVEISTVWENHEIHIVGLNIDIAHPAMRDFLAQQTQRRQARGRLIAERLEKAHIPGAWEG 122

Query: 128 SVRI 131
           ++R+
Sbjct: 123 ALRL 126


>gi|266622525|ref|ZP_06115460.1| PHP domain protein [Clostridium hathewayi DSM 13479]
 gi|288865734|gb|EFC98032.1| PHP domain protein [Clostridium hathewayi DSM 13479]
          Length = 87

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +G  +   ++    A     IA+TD N++ S       A + G++ + G 
Sbjct: 6  LHIHSAASD-DGEYTPQELVAMCTAQGMELIAVTDHNSVRSVTAAQSTASSCGLRVLSGV 64

Query: 74 QLDIDMQDN 82
          +LD   +  
Sbjct: 65 ELDCTHKGR 73


>gi|194735330|ref|YP_002114753.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197300994|ref|ZP_02662832.2| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|238911887|ref|ZP_04655724.1| hypothetical protein SentesTe_12246 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|194710832|gb|ACF90053.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197289199|gb|EDY28566.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 282

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G     I 
Sbjct: 5   LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQ 127
            +    +  + + ++   N           +       +   RLI E + + ++    + 
Sbjct: 63  GVEISTVWENHEIHIVGLNIDIAHPAMRDFLAQQTQRRQARGRLIAERLEKAHIPGAWEG 122

Query: 128 SVRI 131
           ++R+
Sbjct: 123 ALRL 126


>gi|183985376|ref|YP_001853667.1| hypothetical protein MMAR_5407 [Mycobacterium marinum M]
 gi|183178702|gb|ACC43812.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 335

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS +S  +G+  +  ++D  AA      A+TD 
Sbjct: 100 LHLHSEWS--DGSAPIEEMMDTAAALGHEYCALTDH 133


>gi|54309648|ref|YP_130668.1| putative metal-dependent phosphoesterase [Photobacterium
          profundum SS9]
 gi|46914086|emb|CAG20866.1| putative metal-dependent phosphoesterase [Photobacterium
          profundum SS9]
          Length = 297

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L  H++ S  +G LS   +L +    +  A+AITD + +
Sbjct: 5  LHSHTTAS--DGCLSPEELLKRAVERRVDALAITDHDTV 41


>gi|322614980|gb|EFY11905.1| hypothetical protein SEEM315_01816 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621426|gb|EFY18280.1| hypothetical protein SEEM971_11625 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623232|gb|EFY20074.1| hypothetical protein SEEM973_05846 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628522|gb|EFY25310.1| hypothetical protein SEEM974_16305 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633686|gb|EFY30426.1| hypothetical protein SEEM201_01499 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638506|gb|EFY35201.1| hypothetical protein SEEM202_14830 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640824|gb|EFY37473.1| hypothetical protein SEEM954_09144 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645312|gb|EFY41840.1| hypothetical protein SEEM054_03159 [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651805|gb|EFY48177.1| hypothetical protein SEEM675_03232 [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654298|gb|EFY50620.1| hypothetical protein SEEM965_10364 [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659263|gb|EFY55511.1| hypothetical protein SEEM19N_12186 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662735|gb|EFY58942.1| hypothetical protein SEEM801_18177 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667654|gb|EFY63814.1| hypothetical protein SEEM507_07014 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671932|gb|EFY68053.1| hypothetical protein SEEM877_04051 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677022|gb|EFY73086.1| hypothetical protein SEEM867_17429 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680316|gb|EFY76355.1| hypothetical protein SEEM180_05890 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685255|gb|EFY81251.1| hypothetical protein SEEM600_09034 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195435|gb|EFZ80614.1| hypothetical protein SEEM581_00410 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199314|gb|EFZ84408.1| hypothetical protein SEEM501_04654 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204772|gb|EFZ89768.1| hypothetical protein SEEM460_05076 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205932|gb|EFZ90895.1| hypothetical protein SEEM020_06039 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323209960|gb|EFZ94869.1| hypothetical protein SEEM6152_14306 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217257|gb|EGA01978.1| hypothetical protein SEEM0077_19775 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323227966|gb|EGA12118.1| hypothetical protein SEEM0055_13142 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323232121|gb|EGA16228.1| hypothetical protein SEEM0052_17274 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234648|gb|EGA18735.1| hypothetical protein SEEM3312_15965 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238100|gb|EGA22159.1| hypothetical protein SEEM5258_03738 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243296|gb|EGA27315.1| hypothetical protein SEEM1156_03134 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248447|gb|EGA32382.1| hypothetical protein SEEM9199_22444 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252553|gb|EGA36396.1| hypothetical protein SEEM8282_02211 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255422|gb|EGA39188.1| hypothetical protein SEEM8283_12875 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260824|gb|EGA44426.1| hypothetical protein SEEM8284_12334 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267589|gb|EGA51072.1| hypothetical protein SEEM8285_08419 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270945|gb|EGA54381.1| hypothetical protein SEEM8287_13329 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 282

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G     I 
Sbjct: 5   LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQ 127
            +    +  + + ++   N           +       +   RLI E + + ++    + 
Sbjct: 63  GVEISTVWENHEIHIVGLNIDIAHPAMRDFLAQQTQRRQARGRLIAERLEKAHIPGAWEG 122

Query: 128 SVRI 131
           ++R+
Sbjct: 123 ALRL 126


>gi|332091656|gb|EGI96736.1| PHP domain protein [Shigella boydii 5216-82]
          Length = 293

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQQIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            Q+L +   V+R +                         ++  +   W        +I  
Sbjct: 130 AQQLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|323964603|gb|EGB60076.1| PHP domain-containing protein [Escherichia coli M863]
 gi|323977103|gb|EGB72190.1| PHP domain-containing protein [Escherichia coli TW10509]
          Length = 293

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDIAHSAMSEFLAQQTERRNQRAKLIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 130 AQRLAQGGAVTRGHFARFLVECGKASSIADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|292492351|ref|YP_003527790.1| PHP domain protein [Nitrosococcus halophilus Nc4]
 gi|291580946|gb|ADE15403.1| PHP domain protein [Nitrosococcus halophilus Nc4]
          Length = 278

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 68/211 (32%), Gaps = 20/211 (9%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L+   ++ + AA     +A+TD +      E S  +    ++ + G 
Sbjct: 8   LHTHSTAS--DGTLNPTALVQRAAAQGVAVLALTDHDCTGGLAEASAVSANLELELVSGV 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++ +                  +           G Q+L     R Y  +      R   
Sbjct: 66  EISVTWGGRTVHILGLGIDRENL-------ELQAGLQQL-----RAYRDE----RAREIA 109

Query: 134 SWLQEIGTEGLIMLTGG-SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RG 191
             LQ+ G EG +      + G I     F    V +      + +F   L      H  G
Sbjct: 110 QGLQKAGIEGALEGASCYAQGNILSRTHFARFLVEKGYAKNTQDVFKRYLVQGKPGHVAG 169

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
                E  V  + +    P+VA      L+ 
Sbjct: 170 RWATLEEAVTWIRHAGGFPVVAHPARYRLTR 200


>gi|90412189|ref|ZP_01220195.1| putative metal-dependent phosphoesterase [Photobacterium
          profundum 3TCK]
 gi|90326913|gb|EAS43298.1| putative metal-dependent phosphoesterase [Photobacterium
          profundum 3TCK]
          Length = 297

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L  H++ S  +G LS   +L +    +  A+AITD + +
Sbjct: 5  LHSHTTAS--DGCLSPEELLKRAVERRVDALAITDHDTV 41


>gi|251779550|ref|ZP_04822470.1| PHP domain protein [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
 gi|243083865|gb|EES49755.1| PHP domain protein [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
          Length = 277

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +H+S S  +G LS   ++ +   +    +AITD + L       +     G+  I 
Sbjct: 7  HIHTSSS--DGLLSPTEVVKRAKENSVSYLAITDHDTLSGLDSGIKCGKELGVTIIP 61


>gi|194450192|ref|YP_002045768.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197251221|ref|YP_002146305.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205356973|ref|ZP_02343528.2| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205358942|ref|ZP_02666232.2| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194408496|gb|ACF68715.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197214924|gb|ACH52321.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205325106|gb|EDZ12945.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205339093|gb|EDZ25857.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 282

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 8/124 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G     I 
Sbjct: 5   LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQ 127
            +    +  + + ++   N           +       +   RLI E + + ++    + 
Sbjct: 63  GVEISTVWENHEIHIVGLNIDIAHPAMRDFLAQQTQRRQARGRLIAERLEKAHIPGAWEG 122

Query: 128 SVRI 131
           ++R+
Sbjct: 123 ALRL 126


>gi|167769569|ref|ZP_02441622.1| hypothetical protein ANACOL_00903 [Anaerotruncus colihominis DSM
           17241]
 gi|167668537|gb|EDS12667.1| hypothetical protein ANACOL_00903 [Anaerotruncus colihominis DSM
           17241]
          Length = 274

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 52/135 (38%), Gaps = 7/135 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S  +G      ++          +A+TD +++    +    A A G+  + 
Sbjct: 2   VDLHLHTTAS--DGQYPPEQVVRMAHERGVTFLAVTDHDSVNGVEKARTAAAALGVGFV- 58

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
              ++I  + N ++   G         +  + +T +  +   +     YL ++G     +
Sbjct: 59  -SGIEISTKGNRELHMLGYKIDSNNKELCDMCATFQRDRDERKYRILDYLREKGM---PL 114

Query: 132 CLSWLQEIGTEGLIM 146
            L  ++     GLI 
Sbjct: 115 SLEEVEMQAGGGLIA 129


>gi|50121221|ref|YP_050388.1| putative phosphoesterase [Pectobacterium atrosepticum SCRI1043]
 gi|49611747|emb|CAG75196.1| putative phosphoesterase [Pectobacterium atrosepticum SCRI1043]
          Length = 294

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 2  TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          +Q +   P +  L  H++ S  +G L+   ++ +    +   +AITD +      E    
Sbjct: 5  SQPISSFPLY-DLHSHTTAS--DGLLTPTALVSRAVDMRVSVLAITDHDTTAGLDEAQHA 61

Query: 62 ACAAGIQ 68
              G+ 
Sbjct: 62 IAQQGLP 68


>gi|167768606|ref|ZP_02440659.1| hypothetical protein CLOSS21_03165 [Clostridium sp. SS2/1]
 gi|167710130|gb|EDS20709.1| hypothetical protein CLOSS21_03165 [Clostridium sp. SS2/1]
 gi|291560559|emb|CBL39359.1| Predicted metal-dependent phosphoesterases (PHP family)
          [butyrate-producing bacterium SSC/2]
          Length = 74

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
          L  H+  S  +GA+ ++ I+          IAI+D  +  S  E  +     G+  
Sbjct: 5  LHCHTVLS--DGAMRVDQIMPYAKRIGLDYIAISDHESTHSIPEAVRLGKELGVHA 58


>gi|163816444|ref|ZP_02207808.1| hypothetical protein COPEUT_02633 [Coprococcus eutactus ATCC 27759]
 gi|158448144|gb|EDP25139.1| hypothetical protein COPEUT_02633 [Coprococcus eutactus ATCC 27759]
          Length = 306

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            F+ + +H++ S  +G+ S + +          AIAITD + +    E    A       
Sbjct: 2   RFIDMHLHTTAS--DGSCSPSEVCQLAIDKGLAAIAITDHDTIDGVSEAISYAKHHN-AS 58

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           +    +    ++    ++ G      VP I +  
Sbjct: 59  LPSEVVPNTKENGSAFSSSGDRHITVVPGIEMSA 92


>gi|229013754|ref|ZP_04170882.1| PHP C-terminal domain protein [Bacillus mycoides DSM 2048]
 gi|228747423|gb|EEL97298.1| PHP C-terminal domain protein [Bacillus mycoides DSM 2048]
          Length = 573

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRAHGYKFMAITDH 374


>gi|319948348|ref|ZP_08022492.1| ATP-dependent DNA helicase RecG [Dietzia cinnamea P4]
 gi|319437979|gb|EFV92955.1| ATP-dependent DNA helicase RecG [Dietzia cinnamea P4]
          Length = 756

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 985  ESVATIRGNNIRLAAMVVSKQQKK--TRKGSR--IGWVTFSEPAKEYEANFF 1032
            +    + G  + +   V + + +   T+KG    +  +T  +   E+   FF
Sbjct: 51   DKRQLVDGERVTVIGTVTTARTRTYHTKKGQPREMLTLTVEDGDTEFRVVFF 102


>gi|317121907|ref|YP_004101910.1| PHP domain protein [Thermaerobacter marianensis DSM 12885]
 gi|315591887|gb|ADU51183.1| PHP domain protein [Thermaerobacter marianensis DSM 12885]
          Length = 281

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +G ++    +    A     + ITD + L       + A AAGI  + G 
Sbjct: 7  LHTHTTAS--DGTVTPEERIRMAVAAGLEWVGITDHDTLAGLPAAREAARAAGIGLVPGV 64

Query: 74 QLDIDMQDNLKMTN 87
          +L  D+    +   
Sbjct: 65 ELSTDVDLGTRRVG 78


>gi|289425199|ref|ZP_06426976.1| PHP domain protein [Propionibacterium acnes SK187]
 gi|289428090|ref|ZP_06429793.1| PHP domain protein [Propionibacterium acnes J165]
 gi|295130861|ref|YP_003581524.1| PHP domain protein [Propionibacterium acnes SK137]
 gi|289154177|gb|EFD02865.1| PHP domain protein [Propionibacterium acnes SK187]
 gi|289158690|gb|EFD06891.1| PHP domain protein [Propionibacterium acnes J165]
 gi|291375958|gb|ADD99812.1| PHP domain protein [Propionibacterium acnes SK137]
          Length = 286

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 6/112 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  S   ++ K A      +A+TD +      E        G++ + G 
Sbjct: 5   LHTHSTIS--DGTDSPTRLMMKAAGSGLDVVALTDHDTFDGLEEAQAAGQRFGVRLLPGF 62

Query: 74  QLDIDMQDN-LKMTNQGKTPFPTVPSIVLLVSTAEGYQRL---IELVSRMYL 121
           ++   +    + +   G  P   V    L  + A    RL    + +S   +
Sbjct: 63  EMTCHIGGRDVHLLGYGARPDDPVLGRELQATRASRAGRLDAICQRLSDAGM 114


>gi|149195333|ref|ZP_01872420.1| DNA polymerase X family/PHP domain protein [Caminibacter
           mediatlanticus TB-2]
 gi|149134525|gb|EDM23014.1| DNA polymerase X family/PHP domain protein [Caminibacter
           mediatlanticus TB-2]
          Length = 567

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H+ YS  +GA S+  ++ K        I ITD 
Sbjct: 342 HMHTIYS--DGANSIEEMVKKAINLNYKYITITDH 374


>gi|331672791|ref|ZP_08373577.1| protein TrpH [Escherichia coli TA280]
 gi|331070012|gb|EGI41381.1| protein TrpH [Escherichia coli TA280]
          Length = 293

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAISPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIRIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 130 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|289755501|ref|ZP_06514879.1| predicted protein [Mycobacterium tuberculosis EAS054]
 gi|289696088|gb|EFD63517.1| predicted protein [Mycobacterium tuberculosis EAS054]
          Length = 94

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             G+ + +A  V  +Q+  T +G  + ++   +         
Sbjct: 3    DGDRVLIAGAVTHRQRPATAQG--VTFINLEDETGMVNVLC 41


>gi|269217019|ref|ZP_06160873.1| putative histidinol phosphatase [Slackia exigua ATCC 700122]
 gi|269129558|gb|EEZ60642.1| putative histidinol phosphatase [Slackia exigua ATCC 700122]
          Length = 267

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H++YS  +GA S+  +  +       A   TD 
Sbjct: 10 LHAHTTYS--DGANSMEEMARRAVDLGFSAFGFTDH 43


>gi|86606260|ref|YP_475023.1| phosphotransferase domain-containing protein [Synechococcus sp.
          JA-3-3Ab]
 gi|86554802|gb|ABC99760.1| PHP domain protein [Synechococcus sp. JA-3-3Ab]
          Length = 222

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +H+  S  +G +   ++ ++        +AITD + L       ++A A   +P
Sbjct: 37 HLHTCCS--DGRMDPADLAEQARRHGLKGLAITDHHTLKG----YEQAQAYLDRP 85


>gi|327253956|gb|EGE65585.1| PHP domain protein [Escherichia coli STEC_7v]
          Length = 307

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 26  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 83

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 84  GVEISTVWENHEIHIVGLNIDIAHSAMSEFLAQQTERRNQRAKLIAERLEKAQIPGALEG 143

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 144 AQRLAQGGAVTRGHFARFLVECGKASSIADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 203

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 204 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 260

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 261 HLWASQGSDFHQPCPW 276


>gi|312134600|ref|YP_004001938.1| hypothetical protein Calow_0558 [Caldicellulosiruptor owensensis
           OL]
 gi|311774651|gb|ADQ04138.1| hypothetical protein Calow_0558 [Caldicellulosiruptor owensensis
           OL]
          Length = 433

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 2/80 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +H+ YS      S +  +   A    P   I D + +  A EF      AGI   IG +
Sbjct: 48  HIHTFYSF--SPYSPSKAIYMAAKSGLPTAGIMDHDTIAGAQEFIVAGKLAGIATTIGVE 105

Query: 75  LDIDMQDNLKMTNQGKTPFP 94
              D    L    +   P  
Sbjct: 106 CRADFSKTLLSGKKINNPDQ 125


>gi|110641495|ref|YP_669225.1| phosphotransferase domain-containing protein [Escherichia coli 536]
 gi|191171062|ref|ZP_03032613.1| putative phosphoesterase [Escherichia coli F11]
 gi|218689256|ref|YP_002397468.1| hypothetical protein ECED1_1472 [Escherichia coli ED1a]
 gi|218704789|ref|YP_002412308.1| hypothetical protein ECUMN_1564 [Escherichia coli UMN026]
 gi|293404807|ref|ZP_06648799.1| metal-dependent phosphoesterase [Escherichia coli FVEC1412]
 gi|293409650|ref|ZP_06653226.1| trpH [Escherichia coli B354]
 gi|298380448|ref|ZP_06990047.1| trpH [Escherichia coli FVEC1302]
 gi|331682751|ref|ZP_08383370.1| protein TrpH [Escherichia coli H299]
 gi|110343087|gb|ABG69324.1| PHP domain containing protein (TRPH) [Escherichia coli 536]
 gi|190908794|gb|EDV68382.1| putative phosphoesterase [Escherichia coli F11]
 gi|218426820|emb|CAR07670.2| conserved hypothetical protein [Escherichia coli ED1a]
 gi|218431886|emb|CAR12771.1| conserved hypothetical protein [Escherichia coli UMN026]
 gi|291427015|gb|EFF00042.1| metal-dependent phosphoesterase [Escherichia coli FVEC1412]
 gi|291470118|gb|EFF12602.1| trpH [Escherichia coli B354]
 gi|298277890|gb|EFI19404.1| trpH [Escherichia coli FVEC1302]
 gi|331080382|gb|EGI51561.1| protein TrpH [Escherichia coli H299]
          Length = 293

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAISPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 130 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|15610992|ref|NP_218373.1| hypothetical protein Rv3856c [Mycobacterium tuberculosis H37Rv]
 gi|15843487|ref|NP_338524.1| hypothetical protein MT3971 [Mycobacterium tuberculosis CDC1551]
 gi|31795030|ref|NP_857523.1| hypothetical protein Mb3886c [Mycobacterium bovis AF2122/97]
 gi|121639774|ref|YP_979998.1| hypothetical protein BCG_3919c [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148663724|ref|YP_001285247.1| hypothetical protein MRA_3896 [Mycobacterium tuberculosis H37Ra]
 gi|148825065|ref|YP_001289819.1| hypothetical protein TBFG_13892 [Mycobacterium tuberculosis F11]
 gi|167969980|ref|ZP_02552257.1| hypothetical protein MtubH3_18893 [Mycobacterium tuberculosis
           H37Ra]
 gi|215405913|ref|ZP_03418094.1| hypothetical protein Mtub0_19933 [Mycobacterium tuberculosis
           02_1987]
 gi|215413784|ref|ZP_03422452.1| hypothetical protein Mtub9_20550 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215432840|ref|ZP_03430759.1| hypothetical protein MtubE_19773 [Mycobacterium tuberculosis
           EAS054]
 gi|215448202|ref|ZP_03434954.1| hypothetical protein MtubT_20489 [Mycobacterium tuberculosis T85]
 gi|218755644|ref|ZP_03534440.1| hypothetical protein MtubG1_20419 [Mycobacterium tuberculosis GM
           1503]
 gi|219559957|ref|ZP_03539033.1| hypothetical protein MtubT1_22557 [Mycobacterium tuberculosis T17]
 gi|224992269|ref|YP_002646959.1| hypothetical protein JTY_3921 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253800907|ref|YP_003033909.1| hypothetical protein TBMG_03905 [Mycobacterium tuberculosis KZN
           1435]
 gi|254233345|ref|ZP_04926671.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254366401|ref|ZP_04982445.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254548862|ref|ZP_05139309.1| hypothetical protein Mtube_00075 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260184786|ref|ZP_05762260.1| hypothetical protein MtubCP_01837 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260198911|ref|ZP_05766402.1| hypothetical protein MtubT4_01894 [Mycobacterium tuberculosis T46]
 gi|260203067|ref|ZP_05770558.1| hypothetical protein MtubK8_01937 [Mycobacterium tuberculosis K85]
 gi|289441297|ref|ZP_06431041.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289445458|ref|ZP_06435202.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289556126|ref|ZP_06445336.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289572114|ref|ZP_06452341.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289572511|ref|ZP_06452738.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289747699|ref|ZP_06507077.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289755990|ref|ZP_06515368.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289760025|ref|ZP_06519403.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289764045|ref|ZP_06523423.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|297636542|ref|ZP_06954322.1| hypothetical protein MtubK4_20555 [Mycobacterium tuberculosis KZN
           4207]
 gi|297733537|ref|ZP_06962655.1| hypothetical protein MtubKR_20700 [Mycobacterium tuberculosis KZN
           R506]
 gi|298527331|ref|ZP_07014740.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306778222|ref|ZP_07416559.1| hypothetical protein TMAG_00604 [Mycobacterium tuberculosis
           SUMu001]
 gi|306778750|ref|ZP_07417087.1| hypothetical protein TMBG_02397 [Mycobacterium tuberculosis
           SUMu002]
 gi|306786778|ref|ZP_07425100.1| hypothetical protein TMCG_01367 [Mycobacterium tuberculosis
           SUMu003]
 gi|306786907|ref|ZP_07425229.1| hypothetical protein TMDG_01814 [Mycobacterium tuberculosis
           SUMu004]
 gi|306791460|ref|ZP_07429762.1| hypothetical protein TMEG_00356 [Mycobacterium tuberculosis
           SUMu005]
 gi|306795528|ref|ZP_07433830.1| hypothetical protein TMFG_02094 [Mycobacterium tuberculosis
           SUMu006]
 gi|306801502|ref|ZP_07438170.1| hypothetical protein TMHG_02928 [Mycobacterium tuberculosis
           SUMu008]
 gi|306805709|ref|ZP_07442377.1| hypothetical protein TMGG_01403 [Mycobacterium tuberculosis
           SUMu007]
 gi|306970105|ref|ZP_07482766.1| hypothetical protein TMIG_00213 [Mycobacterium tuberculosis
           SUMu009]
 gi|306974339|ref|ZP_07487000.1| hypothetical protein TMJG_01113 [Mycobacterium tuberculosis
           SUMu010]
 gi|307082045|ref|ZP_07491215.1| hypothetical protein TMKG_01107 [Mycobacterium tuberculosis
           SUMu011]
 gi|307086656|ref|ZP_07495769.1| hypothetical protein TMLG_00352 [Mycobacterium tuberculosis
           SUMu012]
 gi|313660868|ref|ZP_07817748.1| hypothetical protein MtubKV_20695 [Mycobacterium tuberculosis KZN
           V2475]
 gi|1781100|emb|CAB06234.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13883860|gb|AAK48338.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|31620628|emb|CAD96072.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121495422|emb|CAL73909.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124603138|gb|EAY61413.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134151913|gb|EBA43958.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148507876|gb|ABQ75685.1| hypothetical protein MRA_3896 [Mycobacterium tuberculosis H37Ra]
 gi|148723592|gb|ABR08217.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224775385|dbj|BAH28191.1| hypothetical protein JTY_3921 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253322411|gb|ACT27014.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289414216|gb|EFD11456.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289418416|gb|EFD15617.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289440758|gb|EFD23251.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289536942|gb|EFD41520.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289545869|gb|EFD49516.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289688227|gb|EFD55715.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289696577|gb|EFD64006.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289711551|gb|EFD75567.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289715589|gb|EFD79601.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298497125|gb|EFI32419.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308213378|gb|EFO72777.1| hypothetical protein TMAG_00604 [Mycobacterium tuberculosis
           SUMu001]
 gi|308328232|gb|EFP17083.1| hypothetical protein TMBG_02397 [Mycobacterium tuberculosis
           SUMu002]
 gi|308328630|gb|EFP17481.1| hypothetical protein TMCG_01367 [Mycobacterium tuberculosis
           SUMu003]
 gi|308336374|gb|EFP25225.1| hypothetical protein TMDG_01814 [Mycobacterium tuberculosis
           SUMu004]
 gi|308339972|gb|EFP28823.1| hypothetical protein TMEG_00356 [Mycobacterium tuberculosis
           SUMu005]
 gi|308343971|gb|EFP32822.1| hypothetical protein TMFG_02094 [Mycobacterium tuberculosis
           SUMu006]
 gi|308347755|gb|EFP36606.1| hypothetical protein TMGG_01403 [Mycobacterium tuberculosis
           SUMu007]
 gi|308351692|gb|EFP40543.1| hypothetical protein TMHG_02928 [Mycobacterium tuberculosis
           SUMu008]
 gi|308352380|gb|EFP41231.1| hypothetical protein TMIG_00213 [Mycobacterium tuberculosis
           SUMu009]
 gi|308356329|gb|EFP45180.1| hypothetical protein TMJG_01113 [Mycobacterium tuberculosis
           SUMu010]
 gi|308360285|gb|EFP49136.1| hypothetical protein TMKG_01107 [Mycobacterium tuberculosis
           SUMu011]
 gi|308363920|gb|EFP52771.1| hypothetical protein TMLG_00352 [Mycobacterium tuberculosis
           SUMu012]
 gi|323717440|gb|EGB26644.1| hypothetical protein TMMG_00352 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326905693|gb|EGE52626.1| hypothetical protein TBPG_03654 [Mycobacterium tuberculosis W-148]
 gi|328460635|gb|AEB06058.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 335

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +G+  +  ++   AA      A+TD 
Sbjct: 100 LHLHSNWS--DGSAPIEEMMATAAALGHQYCALTDH 133


>gi|296135810|ref|YP_003643052.1| PHP domain protein [Thiomonas intermedia K12]
 gi|295795932|gb|ADG30722.1| PHP domain protein [Thiomonas intermedia K12]
          Length = 283

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L+   +  +  A+     A+TD + L    E  Q A A G++ + G 
Sbjct: 11 LHCHSTVS--DGTLTPAALAQRAHANGVDLWALTDHDELGGLTEARQSAEALGLRFVPGV 68


>gi|327542194|gb|EGF28686.1| phosphotransferase domain-containing protein [Rhodopirellula
           baltica WH47]
          Length = 589

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 68/237 (28%), Gaps = 29/237 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALEFSQKACA----AG 66
           L +H+  S  +G  ++  + D         IAITD +    +   L+  +          
Sbjct: 355 LHMHT--SATDGQNTIAEMADAAIERGLKYIAITDHSKRVTMAGGLDTERLLKQWEIIDE 412

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           I+P    +L I       +   G    P  V      +  +  Y              Q 
Sbjct: 413 IRPKYEGRLVILKGIECDILEAGGMDLPDEVLEQGDWILGSVHY-------------GQK 459

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
           +   +I    L  I    +  +   +   ++R   ++    A  +         +  ++ 
Sbjct: 460 QPRDQITDRILGAIENPHVDCIAHPTGRILNRREAYDVDMDAVMQAAK-----ENNKFLE 514

Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           L  +       +  +   A    +P+V   ++          + +  A       + 
Sbjct: 515 LNANPARLDLNDVHLSA-AKKRGIPIVINTDAHVTDGLWVMRYGIRQARRGGLTAAD 570


>gi|149173335|ref|ZP_01851965.1| DNA polymerase beta family protein [Planctomyces maris DSM 8797]
 gi|148847517|gb|EDL61850.1| DNA polymerase beta family protein [Planctomyces maris DSM 8797]
          Length = 573

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 70/237 (29%), Gaps = 30/237 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLF-SA----LEFSQKACAA 65
           L +H+  +  +G  S+  + +   A     IAITD +    +        L    KA   
Sbjct: 341 LHMHT--TATDGTASILEMAEGAKAKGYQYIAITDHSKRVTMANGLDAKRLRAHWKAIEK 398

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
               I G Q+   ++ ++        P   +     ++            V    L    
Sbjct: 399 VQDKISGIQILKGIECDILEDGSMDLPDDVLSEADWVI-----------AVLHYGLKQPQ 447

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
           KQ  +  L+ +Q      +  L+G   G    A    +     K    +         + 
Sbjct: 448 KQINQRLLNAIQNPNVSIIGHLSGRLIGKRPGADL--NYGEILKAAADYGT------MLE 499

Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           +  H       +    + A    +P+V   ++  +S  D   + +  A         
Sbjct: 500 INAHPMRLDIDDIHAAR-AKELGIPIVINTDAHSVSGLDVMQYGIYQARRAGLTKKD 555


>gi|260893633|ref|YP_003239730.1| DNA-directed DNA polymerase [Ammonifex degensii KC4]
 gi|260865774|gb|ACX52880.1| DNA-directed DNA polymerase [Ammonifex degensii KC4]
          Length = 576

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 9/50 (18%)

Query: 7   KSPSFVHL-------QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           + P  V L        VHS YS  +GA +L  I  +        +AI D 
Sbjct: 325 RLPDLVELKDIKGDFHVHSKYS--DGAATLEEIAAEARKLGLEWVAICDH 372


>gi|167040549|ref|YP_001663534.1| phosphotransferase domain-containing protein [Thermoanaerobacter
           sp. X514]
 gi|300914593|ref|ZP_07131909.1| PHP domain protein [Thermoanaerobacter sp. X561]
 gi|307724173|ref|YP_003903924.1| PHP domain-containing protein [Thermoanaerobacter sp. X513]
 gi|166854789|gb|ABY93198.1| PHP C-terminal domain protein [Thermoanaerobacter sp. X514]
 gi|300889528|gb|EFK84674.1| PHP domain protein [Thermoanaerobacter sp. X561]
 gi|307581234|gb|ADN54633.1| PHP domain protein [Thermoanaerobacter sp. X513]
          Length = 335

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 20/120 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LF--------SALEFSQKA 62
           L  H++ S  +G  S   ++   A      +AITD +    L+        S  EF   A
Sbjct: 28  LHCHTTRS--DGNDSPEELVINAAKGGLKVVAITDHDVPPPLYLDTPQGRISVKEF---A 82

Query: 63  CAAGIQPI----IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
              G++ +      C   +D    L      + P        +  S  E Y++L E+++ 
Sbjct: 83  HQHGVEIVLGIEFSCDTYVDDVHILGYRMDWENPLLAEAVERMRRSKTEAYRKLCEILTA 142


>gi|293401783|ref|ZP_06645924.1| putative PHP domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
 gi|291304735|gb|EFE45983.1| putative PHP domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
          Length = 295

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-AGIQPIIG 72
          L +HS YS+ +G  S+  + ++   +    +AI D N+               G+Q I  
Sbjct: 6  LHMHSQYSI-DGEFSVKELCEQANHNGLRVMAIADHNST----RAYHDVTDTKGVQLIPA 60

Query: 73 CQLDIDMQDN 82
           +LD   Q +
Sbjct: 61 IELDCTFQGH 70


>gi|319943943|ref|ZP_08018223.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Lautropia
           mirabilis ATCC 51599]
 gi|319742704|gb|EFV95111.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Lautropia
           mirabilis ATCC 51599]
          Length = 288

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 11/135 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++ S  +G LS   ++++  A+    +A+TD + L    E    A A G+  I G 
Sbjct: 10  LHSHTTRS--DGMLSPTALVERARANGVDMLALTDHDVLDGLPEARAAARAEGLVLIPGV 67

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++ I            +        +  L +   G         R   +    +   +  
Sbjct: 68  EVSITWAGETIHIVGLRVDPQDATLLAGLEANRAGRTE------RAREMAAELERCGVPD 121

Query: 134 SW---LQEIGTEGLI 145
           +W   L+ +G   LI
Sbjct: 122 AWEGALKYVGNPALI 136


>gi|294141572|ref|YP_003557550.1| TrpH family protein [Shewanella violacea DSS12]
 gi|293328041|dbj|BAJ02772.1| TrpH family protein [Shewanella violacea DSS12]
          Length = 291

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
          L  H+S S  +G L+ + ++++   +     AITD +      E  
Sbjct: 10 LHSHTSAS--DGQLTPSELIERAIGNGVQMFAITDHDTTAGLAEAH 53


>gi|302558566|ref|ZP_07310908.1| phosphoesterase PHP, N [Streptomyces griseoflavus Tu4000]
 gi|302476184|gb|EFL39277.1| phosphoesterase PHP, N [Streptomyces griseoflavus Tu4000]
          Length = 285

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++ K AA     IA+TD +      E    A   G+  + G 
Sbjct: 5  LHTHSTAS--DGTDTPAELVRKAAAAGLDVIALTDHDTTRGHAEAL-AALPEGLTLVPGA 61

Query: 74 QLDIDMQ 80
          +L   + 
Sbjct: 62 ELSCRLD 68


>gi|161503165|ref|YP_001570277.1| hypothetical protein SARI_01233 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864512|gb|ABX21135.1| hypothetical protein SARI_01233 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 293

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 46/124 (37%), Gaps = 8/124 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H++ S  +G L+   ++ +    +   + ITD +   +     ++   +G     I 
Sbjct: 16  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLGITDHDTTAAIPAAREEISRSGLALNLIP 73

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQ 127
            +    +  + + ++   N           +       +   RLI E + + ++    + 
Sbjct: 74  GVEISTVWENHEIHIVGLNIDIAHPAMCHFLAQQTQRRQARGRLIAERLEKAHIPGAWEG 133

Query: 128 SVRI 131
           ++R+
Sbjct: 134 ALRL 137


>gi|229087100|ref|ZP_04219250.1| PHP C-terminal domain protein [Bacillus cereus Rock3-44]
 gi|228696168|gb|EEL49003.1| PHP C-terminal domain protein [Bacillus cereus Rock3-44]
          Length = 572

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|262067828|ref|ZP_06027440.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
           33693]
 gi|291378552|gb|EFE86070.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
           33693]
          Length = 130

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD----------HET 608
              ++E   LIK D LG    T+L++  DF       +  +     D           E 
Sbjct: 17  EYHFLENQ-LIKLDMLGHSDPTMLKELKDFTGFDFKNIRFNNTVLYDGILNKEVIGLKEK 75

Query: 609 YHLL-TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             L      T+GI ++ S    + L  ++P  + D+IA      
Sbjct: 76  EDLYPFPSNTMGISEMNSDFTMKTLSELKPKNMFDLIAFSGYSH 119


>gi|320353885|ref|YP_004195224.1| PHP domain-containing protein [Desulfobulbus propionicus DSM
          2032]
 gi|320122387|gb|ADW17933.1| PHP domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 218

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS +S  +GAL  +  + ++      AIAITD 
Sbjct: 4  LHSHSFFS--DGALVPSEHVRRVEHLGYQAIAITDH 37


>gi|227825031|ref|ZP_03989863.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905530|gb|EEH91448.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 270

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L +H+  S  +G+ +    +          +A+TD ++L S     + A   GI+ I 
Sbjct: 5  VDLHLHTIAS--DGSWTPREAVLAAKKAGLGIMAVTDHDSLGSVAPVMKLAPKEGIEVIA 62

Query: 72 GCQLDIDMQDN 82
          G ++    +  
Sbjct: 63 GVEMCSTYEGR 73


>gi|195940874|ref|ZP_03086256.1| phosphotransferase domain-containing protein [Escherichia coli
          O157:H7 str. EC4024]
          Length = 293

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          L  H+  S  +G L+   ++ +    +   +AITD +          +   +G+
Sbjct: 12 LHSHTQAS--DGLLTPEALVHRAVEMRVGTLAITDHDTTDGIPAARAEIARSGL 63


>gi|87309229|ref|ZP_01091366.1| DNA polymerase beta family protein [Blastopirellula marina DSM
           3645]
 gi|87288220|gb|EAQ80117.1| DNA polymerase beta family protein [Blastopirellula marina DSM
           3645]
          Length = 576

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 76/259 (29%), Gaps = 41/259 (15%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H+  S  +GA +L  ++          IAITD +         +   A G+      
Sbjct: 345 LHMHTQAS--DGANTLAEMVAAAREKGLKFIAITDHS--------QRVTMANGLNSERLL 394

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE---------LVSRMYLLDQ 124
           +    + +  K  +        +   +L     +G   L +         + S  Y  +Q
Sbjct: 395 EQWKLIDEFRKSIDDDFLVLKGIECDIL----EQGGMDLPDEVLAQADWVIGSVHYGQNQ 450

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            K+ +   +    E     +I    G           N           ++    +R ++
Sbjct: 451 SKRQITDRIVGALENPHVCMIAHPTGR-------LINNRPPYEVDLEEVYQAAIANRKFL 503

Query: 185 NLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            L  +    R   + V    A    +P+V   ++          + +L A       +  
Sbjct: 504 EL--NAAPKRLDLNDVYCAAAKQRGIPIVINTDAHRTEGLAQARYGILQARRGGLTKADV 561

Query: 244 DRPRVTPDHYLKNRSEMVS 262
                      ++ +EM  
Sbjct: 562 --------ANTRSWAEMQK 572


>gi|294789678|ref|ZP_06754911.1| PHP domain protein [Simonsiella muelleri ATCC 29453]
 gi|294482390|gb|EFG30084.1| PHP domain protein [Simonsiella muelleri ATCC 29453]
          Length = 276

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  S  +G LS   ++   AA+    +A+TD ++    ++  ++A   GI+ I G 
Sbjct: 4  LHCHSYVS--DGELSPIELVKMAAANSCTMLALTDHDHTGGIVQAREEAMWRGIRFISGV 61


>gi|237731720|ref|ZP_04562201.1| trpH [Citrobacter sp. 30_2]
 gi|226907259|gb|EEH93177.1| trpH [Citrobacter sp. 30_2]
          Length = 292

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 47/150 (31%), Gaps = 18/150 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++ S  +G L+   ++ +    +   +AITD +         ++   +G+   +  
Sbjct: 12  LHSHTTAS--DGRLTPEALVHRAVEMRVGTLAITDHDTTAGIAAAREEISRSGLALNLIP 69

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++I         +           ++             E +      ++ +Q  R+  
Sbjct: 70  GVEISTVWENHEIHIVGLNIDIAHPMM------------CEFL--AQQTERRQQRARLIA 115

Query: 134 SWLQEIGTEGLI--MLTGGSSGPIDRAFFF 161
             L +    G     L     G + R  F 
Sbjct: 116 ERLDKAHIPGAWEGALRLADGGAVTRGHFA 145


>gi|159905085|ref|YP_001548747.1| phosphotransferase domain-containing protein [Methanococcus
          maripaludis C6]
 gi|159886578|gb|ABX01515.1| PHP domain protein [Methanococcus maripaludis C6]
          Length = 299

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 15 QVHSSYS---------LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           +H+ YS           +       ++    A+    IA+TD N +  ALE  +     
Sbjct: 11 HIHTKYSGMMKYMGLKFPDSVEEPLKVMKCAKANGMDIIAVTDHNTIKGALETKKYEKEF 70

Query: 66 GIQPIIGCQLDIDMQD 81
          GI+ ++G ++     +
Sbjct: 71 GIEVVVGSEIMSKDGE 86


>gi|121535802|ref|ZP_01667603.1| phosphoesterase PHP domain protein [Thermosinus carboxydivorans
          Nor1]
 gi|121305634|gb|EAX46575.1| phosphoesterase PHP domain protein [Thermosinus carboxydivorans
          Nor1]
          Length = 133

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
            HS +S  +G LS   ++ +       AI +TD  ++
Sbjct: 6  HTHSFFS--DGVLSPIELIRRAHVAGYAAIGVTDHASM 41


>gi|16765065|ref|NP_460680.1| hypothetical protein STM1721 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|20141852|sp|O54453|TRPH_SALTY RecName: Full=Protein trpH
 gi|16420251|gb|AAL20639.1| trpR controlled transcriptional unit in the 5' upstream region of
           the trp operon [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|261246911|emb|CBG24728.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993666|gb|ACY88551.1| hypothetical protein STM14_2084 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158249|emb|CBW17748.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323129993|gb|ADX17423.1| Protein trpH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 293

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G     I 
Sbjct: 16  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 73

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQ 127
            +    +  + + ++   N           +       +   RLI E + + ++    + 
Sbjct: 74  GVEISTVWENHEIHIVGLNIDIAHPAMRDFLAQQTERRQARGRLIAERLEKAHIPGAWEG 133

Query: 128 SVRI 131
           ++R+
Sbjct: 134 ALRL 137


>gi|114332005|ref|YP_748227.1| phosphotransferase domain-containing protein [Nitrosomonas
          eutropha C91]
 gi|114309019|gb|ABI60262.1| PHP C-terminal domain protein [Nitrosomonas eutropha C91]
          Length = 295

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS + +L   A+     +A+TD +++    E    A    I  I G 
Sbjct: 17 LHSHSTIS--DGMLSPSRLLAHAASRGVNILALTDHDDIAGLSEARHCALQENITLINGV 74

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 75 EISVTWHSR 83


>gi|317497917|ref|ZP_07956226.1| hypothetical protein HMPREF0996_01207 [Lachnospiraceae bacterium
          5_1_63FAA]
 gi|316894796|gb|EFV16969.1| hypothetical protein HMPREF0996_01207 [Lachnospiraceae bacterium
          5_1_63FAA]
          Length = 74

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
          L  H+  S  +GA+ ++ I+          IAI+D  +  S  E        G+  
Sbjct: 5  LHCHTVLS--DGAMRVDQIIPYAKRIGLDYIAISDHESTHSIPEAVILGKELGVHA 58


>gi|296166989|ref|ZP_06849403.1| probable DNA polymerase beta chain [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295897669|gb|EFG77261.1| probable DNA polymerase beta chain [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 335

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +G+  ++ ++   AA      A+TD 
Sbjct: 100 LHLHSNWS--DGSAPIDEMMATAAALGHEYCALTDH 133


>gi|289583184|ref|YP_003481650.1| PHP domain protein [Natrialba magadii ATCC 43099]
 gi|289532737|gb|ADD07088.1| PHP domain protein [Natrialba magadii ATCC 43099]
          Length = 228

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +G   +  IL++  A    AIA+TD + + ++LE +++A   G+  I 
Sbjct: 4  VELHAHSALSY-DGRDPVELILEQADAVGLDAIAVTDHDEIDASLEAAERAPDYGLIGIP 62

Query: 72 GC 73
            
Sbjct: 63 AM 64


>gi|269218761|ref|ZP_06162615.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Actinomyces
           sp. oral taxon 848 str. F0332]
 gi|269211872|gb|EEZ78212.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Actinomyces
           sp. oral taxon 848 str. F0332]
          Length = 299

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 3/98 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  +   ++ + A      + +TD + +    E + +  A G   + G 
Sbjct: 26  LHTHSTAS--DGRSTPAELMREAARAGIDVLGLTDHDTVAGWAEAAGQVEATGTALVRGM 83

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
                  D + +   G    P    +   V+     +R
Sbjct: 84  -ELSAKIDGISVHILGYLFDPDDERLTAHVARMLAERR 120


>gi|291279178|ref|YP_003496013.1| hypothetical protein DEFDS_0779 [Deferribacter desulfuricans
          SSM1]
 gi|290753880|dbj|BAI80257.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 220

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          +  L  H+++S  +G L       +        IAITD 
Sbjct: 3  YADLHTHTTFS--DGVLIPAESARRAKTVGYSGIAITDH 39


>gi|320176680|gb|EFW51718.1| hypothetical protein SDB_00824 [Shigella dysenteriae CDC 74-1112]
          Length = 293

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 76/256 (29%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H+  S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTIAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQQIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 130 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLTTLARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|284033257|ref|YP_003383188.1| PHP domain-containing protein [Kribbella flavida DSM 17836]
 gi|283812550|gb|ADB34389.1| PHP domain protein [Kribbella flavida DSM 17836]
          Length = 293

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G   ++ ++     D    IA+TD +      E  + A   GI  + G 
Sbjct: 5  LHTHSNRS--DGTDPVDVLIAHAKRDGLDVIALTDHDTADGWAEGRRAAEQLGIGFVPGI 62

Query: 74 QLDI 77
          ++  
Sbjct: 63 EISC 66


>gi|256811039|ref|YP_003128408.1| PHP domain protein [Methanocaldococcus fervens AG86]
 gi|256794239|gb|ACV24908.1| PHP domain protein [Methanocaldococcus fervens AG86]
          Length = 289

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 14 LQVHSSYS---------LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          L +H+ YS           +      NIL          +AITD N +   +E  +    
Sbjct: 5  LHIHTKYSGICKFWKLSFPDSVEEPRNILKVAKKRGIGVLAITDHNTIRGGVETKKIEKE 64

Query: 65 AGIQPIIGCQLDIDMQD 81
           G++ I+G ++     +
Sbjct: 65 FGVEVIVGSEIMTKEGE 81


>gi|56460848|ref|YP_156129.1| metal-dependent phosphoesterase [Idiomarina loihiensis L2TR]
 gi|56179858|gb|AAV82580.1| Predicted metal-dependent phosphoesterase, PHP family [Idiomarina
          loihiensis L2TR]
          Length = 275

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          L  HS+ S  +G+LS++ ++ +        +AITD + +    E S+
Sbjct: 6  LHCHSTCS--DGSLSVSELVLRACEQNVDVLAITDHDCVDGLAEASR 50


>gi|281178454|dbj|BAI54784.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 293

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            Q+L +   V+R +                         ++  +   W        +I  
Sbjct: 130 AQQLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|312912714|dbj|BAJ36688.1| hypothetical protein STMDT12_C17450 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224352|gb|EFX49415.1| putative metal-dependent phosphoesterases PHP family [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
          Length = 282

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G     I 
Sbjct: 5   LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQ 127
            +    +  + + ++   N           +       +   RLI E + + ++    + 
Sbjct: 63  GVEISTVWENHEIHIVGLNIDIAHPAMRDFLAQQTERRQARGRLIAERLEKAHIPGAWEG 122

Query: 128 SVRI 131
           ++R+
Sbjct: 123 ALRL 126


>gi|258405709|ref|YP_003198451.1| hypothetical protein Dret_1589 [Desulfohalobium retbaense DSM 5692]
 gi|257797936|gb|ACV68873.1| PHP domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 220

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 83/237 (35%), Gaps = 39/237 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+ +S  +G L    +  +       A+A+TD             A A+ +QPI+  
Sbjct: 4   LHTHTVFS--DGELIPAELARRARVAGYRAVAMTDH------------ADASNLQPIL-- 47

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                  DN+    +   P   +     +  T      + +LV+     D G Q V +  
Sbjct: 48  -------DNVGRMVRQFGPHCGIELFFGVELTHVPPALIPDLVAAA--RDGGAQLVVVHG 98

Query: 134 SWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             L E   EG  L  +  G    +D        +  E RL   + +      + +   +G
Sbjct: 99  ETLVEPVEEGTNLAAIEAG----VDILAHPGLIRDEEARLAAERGVA-----LEITTRKG 149

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
           +       V   A  H   LV  N++      D+   D+   VA    +SQ++  +V
Sbjct: 150 H-SLTNGHVAVQARHHGARLVINNDAHG--PSDFVDRDLRRGVALGAGLSQEEYHQV 203


>gi|169836436|ref|ZP_02869624.1| DNA polymerase III subunit alpha [candidate division TM7
           single-cell isolate TM7a]
          Length = 32

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 24/32 (75%)

Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
           +HAA Y +I+Y TA++K HYP  F+AA MT +
Sbjct: 1   THAACYGLIAYWTAYLKAHYPDAFMAALMTSD 32


>gi|302874551|ref|YP_003843184.1| PHP domain-containing protein [Clostridium cellulovorans 743B]
 gi|307690838|ref|ZP_07633284.1| PHP domain-containing protein [Clostridium cellulovorans 743B]
 gi|302577408|gb|ADL51420.1| PHP domain protein [Clostridium cellulovorans 743B]
          Length = 275

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           +HS+ S  +G LS   I+     +    IA+TD +N     E         I+ I G 
Sbjct: 7  HIHSTAS--DGTLSPTEIVTLAKNNGVDVIALTDHDNTKGVEEAILAGLTHNIKVIPGV 63


>gi|170768075|ref|ZP_02902528.1| putative phosphoesterase [Escherichia albertii TW07627]
 gi|170122841|gb|EDS91772.1| putative phosphoesterase [Escherichia albertii TW07627]
          Length = 293

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 84/256 (32%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G+L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGSLTAEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMY----LLDQGK---------------QSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +    L+++GK               ++  +   W        +I  
Sbjct: 130 AQRLAQGGAVTRGHFARFLVERGKASSIADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|194443247|ref|YP_002040975.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194401910|gb|ACF62132.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 282

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 8/124 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G     I 
Sbjct: 5   LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQ 127
            +    +  + + ++   N           +       +   RLI E + + ++    + 
Sbjct: 63  GVEISTVWENHEIHIVGLNIDIAHPAMRDFLAQQTERRQARGRLIAERLEKAHIPGAWEG 122

Query: 128 SVRI 131
           ++R+
Sbjct: 123 ALRL 126


>gi|158522364|ref|YP_001530234.1| hypothetical protein Dole_2353 [Desulfococcus oleovorans Hxd3]
 gi|158511190|gb|ABW68157.1| PHP domain protein [Desulfococcus oleovorans Hxd3]
          Length = 212

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L +H+ +S  +G L  + +  +       AIAITD  
Sbjct: 4  LHMHTIFS--DGVLIPSELARRAEHKGLAAIAITDHG 38


>gi|228960822|ref|ZP_04122457.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798844|gb|EEM45823.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 573

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|218231679|ref|YP_002369350.1| hypothetical protein BCB4264_A4663 [Bacillus cereus B4264]
 gi|218159636|gb|ACK59628.1| PHP domain protein [Bacillus cereus B4264]
          Length = 573

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|205374418|ref|ZP_03227215.1| hypothetical protein Bcoam_15021 [Bacillus coahuilensis m4-4]
          Length = 311

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA SL  ++++        +AITD 
Sbjct: 252 LHMHTTWS--DGAYSLEEMVEECRRLGYSYMAITDH 285


>gi|163942284|ref|YP_001647168.1| hypothetical protein BcerKBAB4_4381 [Bacillus weihenstephanensis
           KBAB4]
 gi|163864481|gb|ABY45540.1| PHP domain protein [Bacillus weihenstephanensis KBAB4]
          Length = 572

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|296505028|ref|YP_003666728.1| hypothetical protein BMB171_C4199 [Bacillus thuringiensis BMB171]
 gi|296326080|gb|ADH09008.1| hypothetical protein BMB171_C4199 [Bacillus thuringiensis BMB171]
          Length = 572

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|169627202|ref|YP_001700851.1| hypothetical protein MAB_0097 [Mycobacterium abscessus ATCC 19977]
 gi|169239169|emb|CAM60197.1| Conserved hypothetical protein (PHP domain protein) [Mycobacterium
           abscessus]
          Length = 336

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +G++ +  ++    A      A+TD 
Sbjct: 100 LHLHSNWS--DGSVPIEEMMSTAKALGHEYCALTDH 133


>gi|327400305|ref|YP_004341144.1| PHP domain-containing protein [Archaeoglobus veneficus SNP6]
 gi|327315813|gb|AEA46429.1| PHP domain protein [Archaeoglobus veneficus SNP6]
          Length = 209

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L +HS+YS  +G  ++  I+ K    +   IAITD 
Sbjct: 4  LHIHSAYS--DGQGTIEEIVRKAKERRIKVIAITDH 37


>gi|301056060|ref|YP_003794271.1| DNA polymerase X family [Bacillus anthracis CI]
 gi|300378229|gb|ADK07133.1| DNA polymerase X family [Bacillus cereus biovar anthracis str. CI]
          Length = 572

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|300723351|ref|YP_003712654.1| protein trpH [Xenorhabdus nematophila ATCC 19061]
 gi|297629871|emb|CBJ90489.1| Protein trpH [Xenorhabdus nematophila ATCC 19061]
          Length = 290

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 1  LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          +T+   +      L  H++ S  +G LS   ++D+  A     +AITD +          
Sbjct: 1  MTEAASEMTKRYDLHSHTTAS--DGVLSPEQLVDRAIAVGIHVLAITDHDTTEGIQPALN 58

Query: 61 KACAAGIQ 68
                + 
Sbjct: 59 HIQQNNLP 66


>gi|228941732|ref|ZP_04104279.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974656|ref|ZP_04135222.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981250|ref|ZP_04141550.1| PHP C-terminal domain protein [Bacillus thuringiensis Bt407]
 gi|228778450|gb|EEM26717.1| PHP C-terminal domain protein [Bacillus thuringiensis Bt407]
 gi|228785059|gb|EEM33072.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817944|gb|EEM64022.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326942337|gb|AEA18233.1| hypothetical protein CT43_CH4573 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 573

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229135385|ref|ZP_04264174.1| PHP C-terminal domain protein [Bacillus cereus BDRD-ST196]
 gi|228648081|gb|EEL04127.1| PHP C-terminal domain protein [Bacillus cereus BDRD-ST196]
          Length = 573

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|218899707|ref|YP_002448118.1| PHP domain protein [Bacillus cereus G9842]
 gi|218541143|gb|ACK93537.1| PHP domain protein [Bacillus cereus G9842]
          Length = 573

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|217962034|ref|YP_002340604.1| hypothetical protein BCAH187_A4679 [Bacillus cereus AH187]
 gi|229141280|ref|ZP_04269818.1| PHP C-terminal domain protein [Bacillus cereus BDRD-ST26]
 gi|217068143|gb|ACJ82393.1| PHP domain protein [Bacillus cereus AH187]
 gi|228642061|gb|EEK98354.1| PHP C-terminal domain protein [Bacillus cereus BDRD-ST26]
          Length = 573

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|62180288|ref|YP_216705.1| hypothetical protein SC1718 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62127921|gb|AAX65624.1| trpR controlled transcriptional unit in the 5' upstream region of
           the trp operon [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322714762|gb|EFZ06333.1| trpR controlled transcriptional unit in the 5' upstream region of
           the trp operon [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 293

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 8/124 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H+  S  +G L+   ++ +    +   +AITD +   +     ++    G     I 
Sbjct: 16  LHSHTMAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 73

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQ 127
            +    +  + + ++   N           +       +   RLI E + + ++    + 
Sbjct: 74  GVEISTVWENHEIHIVGLNIDIAHPAMRDFLAQQTQRRQARGRLIAERLEKAHIPGAWEG 133

Query: 128 SVRI 131
           ++R+
Sbjct: 134 ALRL 137


>gi|30264621|ref|NP_846998.1| hypothetical protein BA_4795 [Bacillus anthracis str. Ames]
 gi|47530092|ref|YP_021441.1| hypothetical protein GBAA_4795 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187443|ref|YP_030695.1| hypothetical protein BAS4448 [Bacillus anthracis str. Sterne]
 gi|167641574|ref|ZP_02399821.1| PHP domain protein [Bacillus anthracis str. A0193]
 gi|254686956|ref|ZP_05150814.1| hypothetical protein BantC_24384 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254736659|ref|ZP_05194365.1| hypothetical protein BantWNA_15961 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741697|ref|ZP_05199384.1| hypothetical protein BantKB_11897 [Bacillus anthracis str. Kruger
           B]
 gi|254754706|ref|ZP_05206741.1| hypothetical protein BantV_19657 [Bacillus anthracis str. Vollum]
 gi|254757538|ref|ZP_05209565.1| hypothetical protein BantA9_04446 [Bacillus anthracis str.
           Australia 94]
 gi|30259279|gb|AAP28484.1| PHP domain protein [Bacillus anthracis str. Ames]
 gi|47505240|gb|AAT33916.1| PHP domain protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181370|gb|AAT56746.1| PHP domain protein [Bacillus anthracis str. Sterne]
 gi|167510459|gb|EDR85858.1| PHP domain protein [Bacillus anthracis str. A0193]
          Length = 572

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|88808544|ref|ZP_01124054.1| hypothetical protein WH7805_02602 [Synechococcus sp. WH 7805]
 gi|88787532|gb|EAR18689.1| hypothetical protein WH7805_02602 [Synechococcus sp. WH 7805]
          Length = 218

 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKACAAGIQPIIG 72
             H+  S  +G+L   +++ + ++     +A+TD ++  + L      +A      P   
Sbjct: 27  HCHTICS--DGSLRPEDLIQQASSHGLRHLAVTDHHSSAAYLPMQSWLEAQTELDHPAPT 84

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
               +++   L+            P    L     G
Sbjct: 85  LWTGMEISCTLRGCLVHVLALGFEPRHRALAVYNHG 120


>gi|240168333|ref|ZP_04746992.1| hypothetical protein MkanA1_03412 [Mycobacterium kansasii ATCC
           12478]
          Length = 335

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +G++ +  ++   A       A+TD 
Sbjct: 100 LHLHSNWS--DGSVPIEEMMATAADLGHEYCALTDH 133


>gi|229019773|ref|ZP_04176576.1| PHP C-terminal domain protein [Bacillus cereus AH1273]
 gi|229026000|ref|ZP_04182384.1| PHP C-terminal domain protein [Bacillus cereus AH1272]
 gi|228735281|gb|EEL85892.1| PHP C-terminal domain protein [Bacillus cereus AH1272]
 gi|228741498|gb|EEL91695.1| PHP C-terminal domain protein [Bacillus cereus AH1273]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229062236|ref|ZP_04199558.1| PHP C-terminal domain protein [Bacillus cereus AH603]
 gi|228717064|gb|EEL68743.1| PHP C-terminal domain protein [Bacillus cereus AH603]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|222098017|ref|YP_002532074.1| hypothetical protein BCQ_4359 [Bacillus cereus Q1]
 gi|229158158|ref|ZP_04286226.1| PHP C-terminal domain protein [Bacillus cereus ATCC 4342]
 gi|221242075|gb|ACM14785.1| DNA polymerase X family [Bacillus cereus Q1]
 gi|228625320|gb|EEK82079.1| PHP C-terminal domain protein [Bacillus cereus ATCC 4342]
          Length = 572

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|187733133|ref|YP_001880096.1| putative phosphoesterase [Shigella boydii CDC 3083-94]
 gi|187430125|gb|ACD09399.1| putative phosphoesterase [Shigella boydii CDC 3083-94]
          Length = 286

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 5   LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 62

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 63  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQQIAERLEKAQIPGALEG 122

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 123 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVSPQWCTIEQAIDVIHH 182

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 183 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLTTLARQH 239

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 240 HLWASQGSDFHQPCPW 255


>gi|228910377|ref|ZP_04074192.1| PHP C-terminal domain protein [Bacillus thuringiensis IBL 200]
 gi|228849143|gb|EEM93982.1| PHP C-terminal domain protein [Bacillus thuringiensis IBL 200]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229124118|ref|ZP_04253310.1| PHP C-terminal domain protein [Bacillus cereus 95/8201]
 gi|228659420|gb|EEL15068.1| PHP C-terminal domain protein [Bacillus cereus 95/8201]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229112017|ref|ZP_04241560.1| PHP C-terminal domain protein [Bacillus cereus Rock1-15]
 gi|229152749|ref|ZP_04280933.1| PHP C-terminal domain protein [Bacillus cereus m1550]
 gi|228630727|gb|EEK87372.1| PHP C-terminal domain protein [Bacillus cereus m1550]
 gi|228671340|gb|EEL26641.1| PHP C-terminal domain protein [Bacillus cereus Rock1-15]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229175260|ref|ZP_04302775.1| PHP C-terminal domain protein [Bacillus cereus MM3]
 gi|228608092|gb|EEK65399.1| PHP C-terminal domain protein [Bacillus cereus MM3]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|116754123|ref|YP_843241.1| phosphotransferase domain-containing protein [Methanosaeta
          thermophila PT]
 gi|116665574|gb|ABK14601.1| PHP C-terminal domain protein [Methanosaeta thermophila PT]
          Length = 219

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+ +S  +G L    +L +  A    AIAITD 
Sbjct: 4  LHTHTVFS--DGELIPAELLRRAEASGYTAIAITDH 37


>gi|324328444|gb|ADY23704.1| hypothetical protein YBT020_22380 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 572

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|228935863|ref|ZP_04098673.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823631|gb|EEM69453.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|228987802|ref|ZP_04147911.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771850|gb|EEM20307.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229032199|ref|ZP_04188172.1| PHP C-terminal domain protein [Bacillus cereus AH1271]
 gi|228728979|gb|EEL79982.1| PHP C-terminal domain protein [Bacillus cereus AH1271]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229093647|ref|ZP_04224747.1| PHP C-terminal domain protein [Bacillus cereus Rock3-42]
 gi|228689734|gb|EEL43541.1| PHP C-terminal domain protein [Bacillus cereus Rock3-42]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|49478687|ref|YP_038601.1| hypothetical protein BT9727_4286 [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330243|gb|AAT60889.1| DNA polymerase X family [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 572

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|116626955|ref|YP_829111.1| phosphotransferase domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116230117|gb|ABJ88826.1| PHP C-terminal domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 273

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 4/112 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++ S  +G  S   ++++        + ITD +      +    A  AG++ + G 
Sbjct: 4   LHSHTNES--DGTCSPAQLIEEAVRVGVKTLGITDHDTFKGYDQACAHAAPAGVELVCGI 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ--RLIELVSRMYLLD 123
           +L   +  +             +      V   +  +  R I LV+R+  L 
Sbjct: 62  ELSTKLHGHSVHLLGYFLDGNGLNDFRTWVLDQQAARRDRNIRLVARLQELG 113


>gi|65321919|ref|ZP_00394878.1| COG1796: DNA polymerase IV (family X) [Bacillus anthracis str.
           A2012]
 gi|165871528|ref|ZP_02216175.1| PHP domain protein [Bacillus anthracis str. A0488]
 gi|167635563|ref|ZP_02393875.1| PHP domain protein [Bacillus anthracis str. A0442]
 gi|170688225|ref|ZP_02879435.1| PHP domain protein [Bacillus anthracis str. A0465]
 gi|170708721|ref|ZP_02899159.1| PHP domain protein [Bacillus anthracis str. A0389]
 gi|177653152|ref|ZP_02935439.1| PHP domain protein [Bacillus anthracis str. A0174]
 gi|190567066|ref|ZP_03019982.1| PHP domain protein [Bacillus anthracis Tsiankovskii-I]
 gi|227817335|ref|YP_002817344.1| PHP domain protein [Bacillus anthracis str. CDC 684]
 gi|229603710|ref|YP_002868831.1| PHP domain protein [Bacillus anthracis str. A0248]
 gi|164712825|gb|EDR18355.1| PHP domain protein [Bacillus anthracis str. A0488]
 gi|167528983|gb|EDR91738.1| PHP domain protein [Bacillus anthracis str. A0442]
 gi|170126401|gb|EDS95290.1| PHP domain protein [Bacillus anthracis str. A0389]
 gi|170667731|gb|EDT18484.1| PHP domain protein [Bacillus anthracis str. A0465]
 gi|172081676|gb|EDT66747.1| PHP domain protein [Bacillus anthracis str. A0174]
 gi|190562057|gb|EDV16026.1| PHP domain protein [Bacillus anthracis Tsiankovskii-I]
 gi|227004335|gb|ACP14078.1| PHP domain protein [Bacillus anthracis str. CDC 684]
 gi|229268118|gb|ACQ49755.1| PHP domain protein [Bacillus anthracis str. A0248]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|239814617|ref|YP_002943527.1| hypothetical protein Vapar_1610 [Variovorax paradoxus S110]
 gi|239801194|gb|ACS18261.1| conserved hypothetical protein [Variovorax paradoxus S110]
          Length = 113

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
           L  IKGVG   ++ I++A  +  F    DF  RV   K  +
Sbjct: 31  LDGIKGVGPAMSKRILDARKEGEFKDWPDFMQRVKGVKEKK 71


>gi|170759450|ref|YP_001786008.1| phosphotransferase domain-containing protein [Clostridium
          botulinum A3 str. Loch Maree]
 gi|169406439|gb|ACA54850.1| PHP domain protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 272

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +    VH+++S  +G   + N+LD        AIAITD + +    E ++      ++ +
Sbjct: 3  YADFHVHTNHS--DGICEIANVLDMAKEKGIKAIAITDHDTVDQFDEINELGRKMDLEVV 60

Query: 71 IGCQLDIDMQDNLKMTN 87
           G ++     D  K  +
Sbjct: 61 KGVEMSCYDYDVFKKVH 77


>gi|228917191|ref|ZP_04080748.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228842392|gb|EEM87483.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|206977723|ref|ZP_03238614.1| PHP domain protein [Bacillus cereus H3081.97]
 gi|229198702|ref|ZP_04325401.1| PHP C-terminal domain protein [Bacillus cereus m1293]
 gi|206744024|gb|EDZ55440.1| PHP domain protein [Bacillus cereus H3081.97]
 gi|228584778|gb|EEK42897.1| PHP C-terminal domain protein [Bacillus cereus m1293]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|150399879|ref|YP_001323646.1| hypothetical protein Mevan_1134 [Methanococcus vannielii SB]
 gi|150012582|gb|ABR55034.1| PHP domain protein [Methanococcus vannielii SB]
          Length = 232

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
            H+ +S  +G L  + ++ +       AI ITD  ++
Sbjct: 20 HTHTVFS--DGELIPSELVRRAKVLGHVAIGITDHADM 55


>gi|52140953|ref|YP_085876.1| hypothetical protein BCZK4297 [Bacillus cereus E33L]
 gi|51974422|gb|AAU15972.1| DNA polymerase X family [Bacillus cereus E33L]
          Length = 572

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|94310009|ref|YP_583219.1| PHP-like protein [Cupriavidus metallidurans CH34]
 gi|93353861|gb|ABF07950.1| putative metal-dependent phosphoesterase (PHP family) [Cupriavidus
           metallidurans CH34]
          Length = 322

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 75/236 (31%), Gaps = 30/236 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS +++  +  A      ++TD + +   +E  + A A G++ + G 
Sbjct: 52  LHCHSTVS--DGLLSPSDVAARAHAGGVAFWSLTDHDEVGGQIEARRAAEALGMRYVPGV 109

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR--------LIEL-VSRMYLLDQ 124
           ++ +            +        I  L  T +G  R        L ++ +S  Y    
Sbjct: 110 EISVTWAGQTVHIVGLQIDPFHPELIDGLAKTRDGRARRAQDIGDALAKVGISGAY-DGA 168

Query: 125 GKQSVRICL-------SWLQEIGTEGLIM------LTGGSSGPIDRAFFFNSSQVAEKRL 171
            +      L        WL + G    I       L+ G  G +   +         + +
Sbjct: 169 LRYVGNPDLISRTHFARWLVDEGRCATIGDVFAEYLSEGRPGFVPHRW-----ATLAEAV 223

Query: 172 LTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              +   G  +  +  R+   D   ++   +        +     S    +    A
Sbjct: 224 GWIRTAGGIPVMAHPGRYNYTDTQHDALFDEFTQLGGRAVEVVTGSHTPDQFRRYA 279


>gi|254724520|ref|ZP_05186303.1| hypothetical protein BantA1_18965 [Bacillus anthracis str. A1055]
          Length = 572

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|229163543|ref|ZP_04291493.1| PHP C-terminal domain protein [Bacillus cereus R309803]
 gi|228619925|gb|EEK76801.1| PHP C-terminal domain protein [Bacillus cereus R309803]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229169280|ref|ZP_04296991.1| PHP C-terminal domain protein [Bacillus cereus AH621]
 gi|228614175|gb|EEK71289.1| PHP C-terminal domain protein [Bacillus cereus AH621]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|218905778|ref|YP_002453612.1| PHP domain protein [Bacillus cereus AH820]
 gi|228929600|ref|ZP_04092618.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228948277|ref|ZP_04110560.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229105179|ref|ZP_04235828.1| PHP C-terminal domain protein [Bacillus cereus Rock3-28]
 gi|229118042|ref|ZP_04247402.1| PHP C-terminal domain protein [Bacillus cereus Rock1-3]
 gi|218537637|gb|ACK90035.1| PHP domain protein [Bacillus cereus AH820]
 gi|228665491|gb|EEL20973.1| PHP C-terminal domain protein [Bacillus cereus Rock1-3]
 gi|228678105|gb|EEL32333.1| PHP C-terminal domain protein [Bacillus cereus Rock3-28]
 gi|228811264|gb|EEM57602.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228829987|gb|EEM75606.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|196034533|ref|ZP_03101942.1| PHP domain protein [Bacillus cereus W]
 gi|195993075|gb|EDX57034.1| PHP domain protein [Bacillus cereus W]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|42783725|ref|NP_980972.1| hypothetical protein BCE_4679 [Bacillus cereus ATCC 10987]
 gi|42739655|gb|AAS43580.1| PHP domain protein [Bacillus cereus ATCC 10987]
          Length = 572

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|251789772|ref|YP_003004493.1| PHP domain-containing protein [Dickeya zeae Ech1591]
 gi|247538393|gb|ACT07014.1| PHP domain protein [Dickeya zeae Ech1591]
          Length = 290

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          L  H++ S  +G L+   ++ +  + +   +AITD +          +A AA +Q ++ 
Sbjct: 16 LHSHTTAS--DGLLTPTELVQRAVSMRVSVLAITDHDTTAGL----DEARAAIVQQVLP 68


>gi|229099011|ref|ZP_04229946.1| PHP C-terminal domain protein [Bacillus cereus Rock3-29]
 gi|228684509|gb|EEL38452.1| PHP C-terminal domain protein [Bacillus cereus Rock3-29]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|75762596|ref|ZP_00742446.1| DNA Polymerase X family [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228903070|ref|ZP_04067207.1| PHP C-terminal domain protein [Bacillus thuringiensis IBL 4222]
 gi|228967650|ref|ZP_04128671.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|74489916|gb|EAO53282.1| DNA Polymerase X family [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228792026|gb|EEM39607.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228856556|gb|EEN01079.1| PHP C-terminal domain protein [Bacillus thuringiensis IBL 4222]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|331646587|ref|ZP_08347690.1| protein TrpH [Escherichia coli M605]
 gi|330911129|gb|EGH39639.1| putative metal-dependent phosphoesterases (PHP family) [Escherichia
           coli AA86]
 gi|331045339|gb|EGI17466.1| protein TrpH [Escherichia coli M605]
          Length = 293

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            Q+L +   V+R +                         ++  +   W        +I  
Sbjct: 130 AQQLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|256390916|ref|YP_003112480.1| PHP domain-containing protein [Catenulispora acidiphila DSM 44928]
 gi|256357142|gb|ACU70639.1| PHP domain protein [Catenulispora acidiphila DSM 44928]
          Length = 407

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           L  H+ +S  +G LS+  + +  A      +A+TD N +
Sbjct: 149 LHAHTDHS--DGTLSVGALAELAAETGLDFLAVTDHNTI 185


>gi|228954822|ref|ZP_04116842.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228804811|gb|EEM51410.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229129837|ref|ZP_04258803.1| PHP C-terminal domain protein [Bacillus cereus BDRD-Cer4]
 gi|228653528|gb|EEL09400.1| PHP C-terminal domain protein [Bacillus cereus BDRD-Cer4]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229147112|ref|ZP_04275471.1| PHP C-terminal domain protein [Bacillus cereus BDRD-ST24]
 gi|228636361|gb|EEK92832.1| PHP C-terminal domain protein [Bacillus cereus BDRD-ST24]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|223984247|ref|ZP_03634393.1| hypothetical protein HOLDEFILI_01687 [Holdemania filiformis DSM
          12042]
 gi|223963778|gb|EEF68144.1| hypothetical protein HOLDEFILI_01687 [Holdemania filiformis DSM
          12042]
          Length = 289

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
           +H+  S  +   +   I+     +    +AITD NN+ S  E +    A GI+ I G +
Sbjct: 7  HIHTIVS-TDADYTPAEIIRMAKKNGVKTLAITDHNNVASVAEAASLGEAEGIRVIPGIE 65

Query: 75 LDIDMQ 80
          +D D +
Sbjct: 66 IDCDFE 71


>gi|213585447|ref|ZP_03367273.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 38

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             F  + DF  ++D  K+NRR LESL+ AGA D FG++
Sbjct: 1   GEFKDINDFLGKIDPTKINRRTLESLIKAGAFDEFGFT 38


>gi|196042098|ref|ZP_03109382.1| PHP domain protein [Bacillus cereus NVH0597-99]
 gi|196027034|gb|EDX65657.1| PHP domain protein [Bacillus cereus NVH0597-99]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|126174908|ref|YP_001051057.1| phosphotransferase domain-containing protein [Shewanella baltica
           OS155]
 gi|125998113|gb|ABN62188.1| PHP C-terminal domain protein [Shewanella baltica OS155]
          Length = 302

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 13/155 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL--EFSQKACAAGIQPII 71
           L  H++ S  +G L+ + ++ +         AITD + +           + A  ++ I 
Sbjct: 26  LHSHTTAS--DGQLTPSELVARALGKGVQLFAITDHDTVAGLPEARAFNLSQAKPLKLIS 83

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++         +           P+++  +      + L EL  R   +        I
Sbjct: 84  GVEISTRWNS-YDIHIVALNFDADNPALLAFLENQ---RELREL--RAQEIGHRLAKAGI 137

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
             ++       G   L+    G   R    N   V
Sbjct: 138 EGAYEGAKALAGEAALS---RGHYARWMAENGHAV 169


>gi|114319848|ref|YP_741531.1| phosphotransferase domain-containing protein [Alkalilimnicola
          ehrlichii MLHE-1]
 gi|114226242|gb|ABI56041.1| PHP C-terminal domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 284

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L+   ++ +  A     +A+TD +      E    A   G++ I G 
Sbjct: 7  LHSHSTAS--DGRLTPTELVTRARAKGVATLALTDHDTTAGVAEAQAAAEEQGLRLIPGV 64

Query: 74 QLDIDMQDN 82
          ++       
Sbjct: 65 EISTTWARR 73


>gi|30022628|ref|NP_834259.1| hypothetical protein BC4553 [Bacillus cereus ATCC 14579]
 gi|29898186|gb|AAP11460.1| DNA polymerase X family [Bacillus cereus ATCC 14579]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229048261|ref|ZP_04193829.1| PHP C-terminal domain protein [Bacillus cereus AH676]
 gi|228722986|gb|EEL74363.1| PHP C-terminal domain protein [Bacillus cereus AH676]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229072055|ref|ZP_04205264.1| PHP C-terminal domain protein [Bacillus cereus F65185]
 gi|229081806|ref|ZP_04214298.1| PHP C-terminal domain protein [Bacillus cereus Rock4-2]
 gi|229180872|ref|ZP_04308207.1| PHP C-terminal domain protein [Bacillus cereus 172560W]
 gi|229192753|ref|ZP_04319711.1| PHP C-terminal domain protein [Bacillus cereus ATCC 10876]
 gi|228590592|gb|EEK48453.1| PHP C-terminal domain protein [Bacillus cereus ATCC 10876]
 gi|228602429|gb|EEK59915.1| PHP C-terminal domain protein [Bacillus cereus 172560W]
 gi|228701394|gb|EEL53888.1| PHP C-terminal domain protein [Bacillus cereus Rock4-2]
 gi|228710989|gb|EEL62955.1| PHP C-terminal domain protein [Bacillus cereus F65185]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|206969975|ref|ZP_03230929.1| PHP domain protein [Bacillus cereus AH1134]
 gi|206735663|gb|EDZ52831.1| PHP domain protein [Bacillus cereus AH1134]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|152976938|ref|YP_001376455.1| hypothetical protein Bcer98_3241 [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152025690|gb|ABS23460.1| PHP domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 572

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|282165289|ref|YP_003357674.1| putative phosphatase, PHP family [Methanocella paludicola SANAE]
 gi|282157603|dbj|BAI62691.1| putative phosphatase, PHP family [Methanocella paludicola SANAE]
          Length = 220

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+ +S  +G L  + ++ +       AIA+TD 
Sbjct: 5  LHTHTLFS--DGELIPSELVRRAKVAGYQAIALTDH 38


>gi|237738045|ref|ZP_04568526.1| phosphotransferase domain-containing protein [Fusobacterium
          mortiferum ATCC 9817]
 gi|229419925|gb|EEO34972.1| phosphotransferase domain-containing protein [Fusobacterium
          mortiferum ATCC 9817]
          Length = 276

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V + +H+  S  +G  +   I+ +   +   A+AITD + +    +  + A   G++ I 
Sbjct: 3  VDMHIHTIES--DGTYTPEEIIVRAIKNNVIALAITDHDTVSGVEKGKEIADKYGMEFIK 60

Query: 72 GCQLDIDMQDNLKM 85
          G ++    +DNL++
Sbjct: 61 GIEISC-NEDNLEI 73


>gi|228923297|ref|ZP_04086585.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836251|gb|EEM81604.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|302036874|ref|YP_003797196.1| hypothetical protein NIDE1531 [Candidatus Nitrospira defluvii]
 gi|190343288|gb|ACE75676.1| phosphoesterase [Candidatus Nitrospira defluvii]
 gi|300604938|emb|CBK41271.1| conserved protein of unknown function, PHP family Phosphoesterase
          [Candidatus Nitrospira defluvii]
          Length = 282

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+++S  +G+ S  +++         A+AITD + +    E +      GI+ + G 
Sbjct: 6  LHLHTTHS--DGSFSTRDVMAFAKQAGVTALAITDHDIVEGIAEATAIGAELGIEVVPGV 63


>gi|325497460|gb|EGC95319.1| putative phosphoesterase [Escherichia fergusonii ECD227]
          Length = 286

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 5   LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 62

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 63  GVEISTVWENHEIHIVGLNIDIAHSAMSEFLVQQTERRNQRAQLIAERLEKAQIPGALEG 122

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 123 AQRLAQGGAVTRGHFARFLVECGKASSIADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 182

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 183 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQH 239

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 240 HLWASQGSDFHQPCPW 255


>gi|124027818|ref|YP_001013138.1| hypothetical protein Hbut_0945 [Hyperthermus butylicus DSM 5456]
 gi|123978512|gb|ABM80793.1| universally conserved protein [Hyperthermus butylicus DSM 5456]
          Length = 242

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 76/238 (31%), Gaps = 40/238 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S+ +G  S   I+      +   IAITD ++   +L+  +     G++ ++  
Sbjct: 8   LHTHS--SVSDGRESPEEIVLTAIDKELGVIAITDHDSFLGSLKARKVVRELGVELVVVI 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +I  +    +    + P   +P            +   ELV              +  
Sbjct: 66  GAEIRTEAGDILVYCSENPLERIP------------RNPFELVDVAREEG-----CLVVP 108

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
           +   +I  +G           I    +      A +    +     +R        R  +
Sbjct: 109 AHPFDIRRKG-----------ISELVYRGRWD-AIEVFNAYSDPLSNR--------RAVE 148

Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE-AHDVLMAVAHSTVVSQKDRPRVTP 250
             R  ++  LA +      A  ++  + E     A +VL A+    V     RP ++ 
Sbjct: 149 AARVLKLPGLANSDAHVAAAIGSAYNIIEVREPSAEEVLEAIRVGRVTPVAGRPSISA 206


>gi|325963997|ref|YP_004241903.1| metal-dependent phosphoesterase, PHP family [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470084|gb|ADX73769.1| putative metal-dependent phosphoesterase, PHP family [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 282

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G     +++   A      +A+TD ++     E +  A   GI  + G 
Sbjct: 5   LHAHSNVS--DGTEKPADVMASAARAGLDVVALTDHDSTAGWDEAAAAALEQGIALVPGM 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           ++    ++ + +        P    ++
Sbjct: 63  EVSCRTEEGISVHLLSYLHDPNHAGLL 89


>gi|146282790|ref|YP_001172943.1| phosphotransferase domain-containing protein [Pseudomonas stutzeri
           A1501]
 gi|145570995|gb|ABP80101.1| PHP domain protein [Pseudomonas stutzeri A1501]
 gi|327481128|gb|AEA84438.1| phosphotransferase domain-containing protein [Pseudomonas stutzeri
           DSM 4166]
          Length = 288

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 66/205 (32%), Gaps = 8/205 (3%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +G L+   ++++        +A+TD + +    E    A A G+Q + 
Sbjct: 3   VDLHCHSTAS--DGVLAPTKLVERAHGRGVQLLALTDHDTVDGLAEARAAALALGVQLVN 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L                          +    EG  R  E +++         ++  
Sbjct: 61  GIELSCLWNGATIHVLGYAFAADAPALQQAIAQLHEGRWRRAEQIAQRLEAKGMPGALEG 120

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             +  QE+G       +G +      A F   +     R   F+K  G     ++++H  
Sbjct: 121 ARAIQQELGD------SGNAPARPHFAEFLVRAGHVRDRAEAFRKWLGSGKLGDVKQHWP 174

Query: 192 YDRYRESQVVQLAYTHELPLVATNN 216
                   + +      L      +
Sbjct: 175 SLEQTVRTLREAGAWISLAHPWQYD 199


>gi|329894514|ref|ZP_08270328.1| putative metal-dependent phosphoesterases (PHP family) [gamma
          proteobacterium IMCC3088]
 gi|328923039|gb|EGG30364.1| putative metal-dependent phosphoesterases (PHP family) [gamma
          proteobacterium IMCC3088]
          Length = 279

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 9/55 (16%)

Query: 1  LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          ++Q L+       L VHS+ S  +GALS+ ++L++  A     IA+TD + +   
Sbjct: 1  MSQRLD-------LHVHSTCS--DGALSVPDLLERALAADIQTIALTDHDTIKGV 46


>gi|323691805|ref|ZP_08106062.1| PHP domain-containing protein [Clostridium symbiosum WAL-14673]
 gi|323504171|gb|EGB19976.1| PHP domain-containing protein [Clostridium symbiosum WAL-14673]
          Length = 285

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F+ L VHSS S  +G L+   + +        A A+TD +      E  + A   G++ I
Sbjct: 3  FIDLHVHSSAS--DGTLAPGLVTELALEKGLYAYALTDHDTTDGIDEAVRAAAGTGLEVI 60

Query: 71 IGCQLDIDMQ 80
           G +L    +
Sbjct: 61 PGTELSCIYE 70


>gi|163750228|ref|ZP_02157470.1| TrpH family protein [Shewanella benthica KT99]
 gi|161330084|gb|EDQ01068.1| TrpH family protein [Shewanella benthica KT99]
          Length = 291

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
          L  H+  S  +G LS + ++++   +     AITD +      E  
Sbjct: 10 LHSHTKAS--DGQLSPSELIERAIVNGVQMFAITDHDTTAGLAEAH 53


>gi|292492014|ref|YP_003527453.1| PHP domain protein [Nitrosococcus halophilus Nc4]
 gi|291580609|gb|ADE15066.1| PHP domain protein [Nitrosococcus halophilus Nc4]
          Length = 573

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H+  +  +G+ SL  +    A      +AITD 
Sbjct: 342 LHCHTKAT--DGSNSLEEMAQAAAERGYEYLAITDH 375


>gi|313126967|ref|YP_004037237.1| metal-dependent phosphoesterase, php family [Halogeometricum
          borinquense DSM 11551]
 gi|312293332|gb|ADQ67792.1| predicted metal-dependent phosphoesterase, PHP family
          [Halogeometricum borinquense DSM 11551]
          Length = 227

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HSS S  +    +  +L++  A    A+A+TD + + ++L+ +  A   G+  I 
Sbjct: 4  VELHAHSSLSY-DARDPIELLLEQAEAVGLDALAVTDHDEIDASLQAADIAEDYGLVGIP 62

Query: 72 GCQLDIDMQD 81
          G ++      
Sbjct: 63 GMEVTSAAGH 72


>gi|15669783|ref|NP_248596.1| hypothetical protein MJ_1587 [Methanocaldococcus jannaschii DSM
          2661]
 gi|2496191|sp|Q58982|Y1587_METJA RecName: Full=Uncharacterized protein MJ1587
 gi|1500483|gb|AAB99616.1| hypothetical protein MJ_1587 [Methanocaldococcus jannaschii DSM
          2661]
          Length = 171

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 14 LQVHSSYS---------LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          L +H+ YS           +      NIL          +AITD N +   +E  +    
Sbjct: 5  LHIHTKYSGIGKFWKLKFPDSVEEPRNILKVAKKKGIEVVAITDHNTIRGGVETKKLEKE 64

Query: 65 AGIQPIIGCQLDIDMQD 81
           G++ +IG ++     +
Sbjct: 65 FGVEVVIGSEIMTTEGE 81


>gi|297172010|gb|ADI22994.1| DNA polymerase IV (family X) [uncultured Planctomycetales bacterium
           HF0500_40D21]
 gi|297183360|gb|ADI19495.1| DNA polymerase IV (family x) [uncultured Planctomycetales bacterium
           HF0500_40D21]
          Length = 583

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 69/218 (31%), Gaps = 28/218 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALEFSQ-KACAAGIQP 69
           L +H+  +  +G  S+  ++    A ++  IAITD +    +   L+  + +A    I  
Sbjct: 352 LHMHT--TATDGTASIEEMIAAAKARKRKYIAITDHSKRVTMAGGLDAKRLRAHWKQIDK 409

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I G    I++   ++              ++                    +L  G +  
Sbjct: 410 IRGSVSGIEVLCGIECDILEDATLDLPDDVLAEADWVIA------------VLHYGLKQP 457

Query: 130 R--ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNL 186
           R  I    +  +    + ++ G  SG             AE       +   D  + + +
Sbjct: 458 REQIDARLMTAVQNPHVDVI-GHPSG-----RLIGKRPGAEISYPGLFQAAADHGVMMEI 511

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
             H       +      A  H +P+V + ++      D
Sbjct: 512 NAHPSRLDLDDVHAAA-ARDHGIPIVISTDAHSTGGMD 548


>gi|256396923|ref|YP_003118487.1| PHP domain-containing protein [Catenulispora acidiphila DSM
          44928]
 gi|256363149|gb|ACU76646.1| PHP domain protein [Catenulispora acidiphila DSM 44928]
          Length = 288

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQKACAAGI 67
          L  H++ S  +G      ++    A     +AITD +       A    +    AG+
Sbjct: 5  LHAHTTAS--DGTFEPAELVGMAEAAGLTVVAITDHDGTAGWSEARRALRYGHEAGV 59


>gi|218553818|ref|YP_002386731.1| hypothetical protein ECIAI1_1285 [Escherichia coli IAI1]
 gi|218360586|emb|CAQ98144.1| conserved hypothetical protein [Escherichia coli IAI1]
          Length = 293

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+      
Sbjct: 12  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTVAIAPAREEISRSGLALNLIP 69

Query: 70  ---------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                                I    +   +    +  NQ             +    EG
Sbjct: 70  GVEISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEG 129

Query: 109 YQRLIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIML 147
            QRL +   V+R +                         ++  +   W        +I  
Sbjct: 130 AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHH 189

Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
           +GG +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H
Sbjct: 190 SGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLAALARQH 246

Query: 208 ELPLVATNNSLFLSEE 223
            L     ++       
Sbjct: 247 HLWASQGSDFHQPCPW 262


>gi|167462818|ref|ZP_02327907.1| predicted metal-dependent phosphoesterase (PHP family) protein
          [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322384341|ref|ZP_08058039.1| hypothetical protein PL1_0900 [Paenibacillus larvae subsp. larvae
          B-3650]
 gi|321150843|gb|EFX44280.1| hypothetical protein PL1_0900 [Paenibacillus larvae subsp. larvae
          B-3650]
          Length = 280

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS  S  +G  +    +         A+AITD + +    E  ++    G Q + 
Sbjct: 6  VDLHTHSLAS--DGTQTPGENVRMAWEIGLAAVAITDHDTVDGLEEAMEEGKRLGFQVVP 63

Query: 72 GC 73
          G 
Sbjct: 64 GV 65


>gi|15615669|ref|NP_243973.1| hypothetical protein BH3107 [Bacillus halodurans C-125]
 gi|10175729|dbj|BAB06826.1| DNA-dependent DNA polymerase beta chain [Bacillus halodurans C-125]
          Length = 571

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  + +         IAITD 
Sbjct: 338 LHMHTTWS--DGAHSIEEMAEAARQRGYEYIAITDH 371


>gi|39996548|ref|NP_952499.1| PHP domain protein [Geobacter sulfurreducens PCA]
 gi|39983429|gb|AAR34822.1| PHP domain protein [Geobacter sulfurreducens PCA]
 gi|298505564|gb|ADI84287.1| metal-dependent phosphoesterase, PHP family [Geobacter
          sulfurreducens KN400]
          Length = 288

 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VHS +S  +G L+   ++   A     ++AI D + +    E   +    G+  I   
Sbjct: 6  LHVHSYHS--DGVLAPAVLVAMAAERGLASLAIADHDAVDGIDEAVAEGVRLGVDVIPAV 63


>gi|302671083|ref|YP_003831043.1| PHP domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302395556|gb|ADL34461.1| PHP domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 282

 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          L  HS+ S  +G  S+  ++D   A    AIA+TD + +    E  +    
Sbjct: 6  LHTHSTCS--DGTYSVKELMDYAYAKGLAAIALTDHDTVKGLREADEYVKE 54


>gi|238794707|ref|ZP_04638311.1| hypothetical protein yinte0001_18110 [Yersinia intermedia ATCC
           29909]
 gi|238725938|gb|EEQ17488.1| hypothetical protein yinte0001_18110 [Yersinia intermedia ATCC
           29909]
          Length = 316

 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 10/124 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--KACAAGIQPII 71
           L  H++ S  +G L+ + ++ + A  +   +AITD +      E +         +Q I 
Sbjct: 36  LHSHTTAS--DGLLTPSALVIRAAQMRVGVLAITDHDTTAGLAEAATTIAQQQLALQLIA 93

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G      + +N ++   G        SI  L+S    Y+ L     R   +       RI
Sbjct: 94  GV-EISTLWENHEIHIVGLGIDTQHASICKLLSEQSNYRHL-----RAQEISARLAKARI 147

Query: 132 CLSW 135
             +W
Sbjct: 148 PGAW 151


>gi|45357818|ref|NP_987375.1| isoleucyl-tRNA synthetase-like protein [Methanococcus maripaludis
          S2]
 gi|45047378|emb|CAF29811.1| isoleucyl-tRNA synthetase related [Methanococcus maripaludis S2]
          Length = 299

 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 15 QVHSSYS---------LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           +H+ YS           +       ++    A+    IA+TD N +  ALE  +     
Sbjct: 11 HIHTKYSGMMKYMGLKFPDSVEEPLKVMKCAKANGMNIIAVTDHNTIKGALETKKYEKEF 70

Query: 66 GIQPIIGCQLDIDMQD 81
          GI+ ++G ++     +
Sbjct: 71 GIEVVVGSEIMSKDGE 86


>gi|224368198|ref|YP_002602361.1| two domain fusion protein Includes: metal-dependent
          phosphoesterase / ribonuclease III [Desulfobacterium
          autotrophicum HRM2]
 gi|223690914|gb|ACN14197.1| two domain fusion protein Includes: metal-dependent
          phosphoesterase / ribonuclease III [Desulfobacterium
          autotrophicum HRM2]
          Length = 520

 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +G LS   I+         AIAITD +      E  +      ++ I G 
Sbjct: 4  LHIHSTAS--DGTLSPLEIVKTAVDSAINAIAITDHDTTDGVREIIEAGVPQTLELITGI 61

Query: 74 QLDIDMQDNLKM 85
          ++        ++
Sbjct: 62 EISATPPPGFEI 73


>gi|324999668|ref|ZP_08120780.1| hypothetical protein PseP1_12910 [Pseudonocardia sp. P1]
          Length = 289

 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++    A     +AITD +      + +  A  AG+  + G 
Sbjct: 6  LHAHSTAS--DGTDTPAELVRAAGAAGLDVVAITDHDTTHG-WDDAVAALPAGLSLVRGA 62

Query: 74 QLDI 77
          +   
Sbjct: 63 EFSC 66


>gi|238754968|ref|ZP_04616317.1| hypothetical protein yruck0001_15200 [Yersinia ruckeri ATCC
          29473]
 gi|238706827|gb|EEP99195.1| hypothetical protein yruck0001_15200 [Yersinia ruckeri ATCC
          29473]
          Length = 303

 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 1  LTQYLEKSPSFV--HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          +T    +  +F    L  H++ S  +G L+   ++ + A+ +   +AITD +      E 
Sbjct: 1  MTDTTTEPTAFTLYDLHSHTTAS--DGLLTPTQLVVRAASMRVGVLAITDHDTTGGLAEA 58

Query: 59 SQKACAAGIQ 68
          +Q      + 
Sbjct: 59 AQAIKEQHLP 68


>gi|56421229|ref|YP_148547.1| hypothetical protein GK2694 [Geobacillus kaustophilus HTA426]
 gi|56381071|dbj|BAD76979.1| DNA-dependent DNA polymerase beta chain [Geobacillus kaustophilus
           HTA426]
          Length = 574

 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA SL  + +         IAITD 
Sbjct: 340 LHMHSAWS--DGACSLEELAEACRRRGYRYIAITDH 373


>gi|303228545|ref|ZP_07315373.1| PHP domain protein [Veillonella atypica ACS-134-V-Col7a]
 gi|302516792|gb|EFL58706.1| PHP domain protein [Veillonella atypica ACS-134-V-Col7a]
          Length = 274

 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 65/253 (25%), Gaps = 40/253 (15%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA---------------L 56
           V   +HS++S  +G  +   +L          IA+TD + +                   
Sbjct: 3   VDFHMHSTFS--DGVETPEQLLQHAIEADLKMIALTDHDEIAGIDVMLQNNSSIQIITGC 60

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           EFS       I  +       D      +    +     +  I+     A GY      +
Sbjct: 61  EFSGHYKGKDIHILGYGFNHHDEGLRKFIEFFKEKRESRIKEIISRCI-AHGYDISFSEL 119

Query: 117 SRMYLLDQGKQSVRICLSWLQEIGT-------EGLI-----MLTGGSSGPIDRAFFFNSS 164
             +Y   +      +    +            +G++              +        +
Sbjct: 120 QNLYPNTKSYGRPHVARLLIDHGYAKDVQDVFDGILNSKSPCYIPKVKLEVPEILDIIHN 179

Query: 165 QVAEKRLLTFKKLFGDRLYVNL---------QRHRGYDRYRESQVVQLAYTHELPLVATN 215
                 L   K +  D     L           H  +D   E + + +A    L +   +
Sbjct: 180 ANGLAVLAHPKLVRNDEYVAELLNYSFDGVEVYHSKHDYDDEVKYLTMAKERNLFVTGGS 239

Query: 216 NSLFLSEEDYEAH 228
           +   +    Y  H
Sbjct: 240 DYHGI-PNRYPYH 251


>gi|297544639|ref|YP_003676941.1| PHP domain protein [Thermoanaerobacter mathranii subsp. mathranii
          str. A3]
 gi|296842414|gb|ADH60930.1| PHP domain protein [Thermoanaerobacter mathranii subsp. mathranii
          str. A3]
          Length = 278

 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F  L +HS  S  +G    + ++          I++TD + +    E    +    I+ I
Sbjct: 2  FADLHMHSKAS--DGTNLPSEVVRLAKEHGLSCISLTDHDTIDGLEEAVWISFKYEIEVI 59

Query: 71 IGCQLDIDMQD 81
           G + +   Q+
Sbjct: 60 PGIEFNCYYQN 70


>gi|293606025|ref|ZP_06688390.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Achromobacter piechaudii ATCC 43553]
 gi|292815480|gb|EFF74596.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Achromobacter piechaudii ATCC 43553]
          Length = 291

 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  HS+ S  +GAL+  ++  +  A+     A+TD + +    E ++ A   G++
Sbjct: 20 LHCHSTVS--DGALAPADVARRAHANGVDVWALTDHDEIGGLAEAARAAEDLGMR 72


>gi|320101258|ref|YP_004176850.1| PHP domain-containing protein [Desulfurococcus mucosus DSM 2162]
 gi|319753610|gb|ADV65368.1| PHP domain protein [Desulfurococcus mucosus DSM 2162]
          Length = 230

 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
          L VHSSYS  +G      IL   A      IAITD +     LE  + +  A
Sbjct: 6  LHVHSSYS--DGRAGPREILRYAALKGVGVIAITDHDTFRGGLEGYRLSREA 55


>gi|297157477|gb|ADI07189.1| hypothetical protein SBI_04068 [Streptomyces bingchenggensis
          BCW-1]
          Length = 308

 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
          L  HS+ S  +G  +   ++   AA     +A+TD + +       ++A  A
Sbjct: 5  LHTHSTAS--DGTDTPAELVLGAAAAGLDVVALTDHDTVGG----YEEAKRA 50


>gi|257054725|ref|YP_003132557.1| putative metal-dependent phosphoesterase, PHP family
          [Saccharomonospora viridis DSM 43017]
 gi|256584597|gb|ACU95730.1| predicted metal-dependent phosphoesterase, PHP family
          [Saccharomonospora viridis DSM 43017]
          Length = 295

 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L  HS+ S  +G  S   ++   A      IA+TD +    
Sbjct: 8  LHTHSAVS--DGTDSPAELVRIAAESGLDVIALTDHDTTAG 46


>gi|206889853|ref|YP_002248452.1| PHP domain protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741791|gb|ACI20848.1| PHP domain protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 216

 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L +HS +S  +G L    I+ +  A    A+AITD 
Sbjct: 4  LHIHSVFS--DGELIPAEIIRRAEAIGYKALAITDH 37


>gi|168185378|ref|ZP_02620013.1| PHP domain protein [Clostridium botulinum C str. Eklund]
 gi|169296252|gb|EDS78385.1| PHP domain protein [Clostridium botulinum C str. Eklund]
          Length = 243

 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            VH+ YS  +  +  N +   +  +    IAITD N +  A++F +K     I  IIG +
Sbjct: 8   HVHTEYSP-DSDIKFNKLYQVLKKNDIYGIAITDHNTIEGAVKFKEK-YGEDIHVIIGEE 65

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           +     + + +  +        P  V+     +G
Sbjct: 66  IMTTEGEIIGLFLKTGIKKGLTPEEVIKEINNQG 99


>gi|295399459|ref|ZP_06809441.1| PHP domain protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978925|gb|EFG54521.1| PHP domain protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 572

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +         +AITD 
Sbjct: 340 LHMHSAWS--DGACSIEEMAEACRKKGYRYMAITDH 373


>gi|312109982|ref|YP_003988298.1| PHP domain protein [Geobacillus sp. Y4.1MC1]
 gi|311215083|gb|ADP73687.1| PHP domain protein [Geobacillus sp. Y4.1MC1]
          Length = 572

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +         +AITD 
Sbjct: 340 LHMHSAWS--DGACSIEEMAEACRKKGYRYMAITDH 373


>gi|322833323|ref|YP_004213350.1| PHP domain protein [Rahnella sp. Y9602]
 gi|321168524|gb|ADW74223.1| PHP domain protein [Rahnella sp. Y9602]
          Length = 307

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H++ S  +G L+   ++ +    +   +AITD ++       ++      + 
Sbjct: 25 LHSHTTAS--DGYLTPEALVARAVEMRVGVLAITDHDSTEGLARAARAIADNQLP 77


>gi|297529146|ref|YP_003670421.1| PHP domain protein [Geobacillus sp. C56-T3]
 gi|297252398|gb|ADI25844.1| PHP domain protein [Geobacillus sp. C56-T3]
          Length = 574

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA SL  +++         IAITD 
Sbjct: 340 LHMHSAWS--DGACSLAELVEACRRRGYRYIAITDH 373


>gi|257884189|ref|ZP_05663842.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257820027|gb|EEV47175.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
          Length = 271

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 2/42 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L VHS YS   G      +L    A +   +AI D +     
Sbjct: 5  LHVHSCYS--NGFFHPKELLSLATAQEINHLAIVDHHTFAGI 44


>gi|88603644|ref|YP_503822.1| PHP-like protein [Methanospirillum hungatei JF-1]
 gi|88189106|gb|ABD42103.1| PHP-like protein [Methanospirillum hungatei JF-1]
          Length = 221

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 69/237 (29%), Gaps = 62/237 (26%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA--AGIQPII 71
           L +H+S S  +G  ++  ++          IAITD + +       + AC   A I  II
Sbjct: 6   LHIHTSCS-KDGESTVAQVIAAAVTAGMDVIAITDHDTMDG----YRIACEISADI-LII 59

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
                   + +L      K P P  P                                  
Sbjct: 60  PGVEVSTREGHLIALGVEKAPLPGFP---------------------------------- 85

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
            L  +QE+   G I +       +   F       A K    F         + +   R 
Sbjct: 86  ILDTIQEVRQAGGITI-------LPHPFHRYRHGAALKCAEAFGAADA----IEVYNSRY 134

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLF---------LSEEDYEAHDVLMAVAHSTV 239
              +   + ++LA T   P VA +++           L + D     VL A+     
Sbjct: 135 VIPHANHRAMRLARTMGKPAVAGSDAHNARFIGYGRTLIDADRNIGSVLNAIQEGKT 191


>gi|171059263|ref|YP_001791612.1| phosphotransferase domain-containing protein [Leptothrix cholodnii
           SP-6]
 gi|170776708|gb|ACB34847.1| PHP domain protein [Leptothrix cholodnii SP-6]
          Length = 298

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 63/173 (36%), Gaps = 5/173 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS  ++  + A +     A+TD + +   L     A A G+  + G 
Sbjct: 18  LHCHSTVS--DGTLSPEDLAARAANNGVELWALTDHDEIGGQLRARAAAHAHGMAYLCGT 75

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++ +           G    P  P ++  ++   G + L        L   G        
Sbjct: 76  EISVTFAGETVHIV-GLGFDPLDPQLIDGLARTRGGRELRARDMAASLAKVGIHGA--FE 132

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             L+ +G   LI  T  +   ++     ++S+V  + L   K  F    +  L
Sbjct: 133 GALKYVGNPDLISRTHFARHLVEVGVCNDTSEVFRRFLTEGKPGFVPHRWAGL 185


>gi|312137208|ref|YP_004004545.1| php domain protein [Methanothermus fervidus DSM 2088]
 gi|311224927|gb|ADP77783.1| PHP domain protein [Methanothermus fervidus DSM 2088]
          Length = 212

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +H+ YS  +     ++I+         AIAITD N     ++  +      I+ I
Sbjct: 7  HIHTLYS-GDSKNIPDDIVKIAKKRGLDAIAITDHNT----IKGYEVIAKRNIEDI 57


>gi|310826757|ref|YP_003959114.1| putative PHP domain protein [Eubacterium limosum KIST612]
 gi|308738491|gb|ADO36151.1| putative PHP domain protein [Eubacterium limosum KIST612]
          Length = 243

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 5/46 (10%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LFSALE 57
            H++YS   G  ++  ++++  A    AI I+D      +F    
Sbjct: 8  HTHTTYS--HGKNTIEEMVEQARALGLRAIVISDHGRSHPMFGVRR 51


>gi|307265937|ref|ZP_07547485.1| PHP domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919001|gb|EFN49227.1| PHP domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 339

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 14/116 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LF-----SALEFSQKACAA 65
           L  H++ S  +G  +   ++   A +    +AITD +    L+       ++    A   
Sbjct: 32  LHCHTTRS--DGNDTPQELIVNAAKNGLRVVAITDHDVQPPLYLDTTNGKIDIKDFARQQ 89

Query: 66  GIQPI----IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
           GI+ +      C   +D    L      K P        +  S  E Y++L E+++
Sbjct: 90  GIELVLGIEFSCDTYVDDVHILGYRMDWKNPLLEEAIERMRKSKTEAYKKLCEVLT 145


>gi|302344089|ref|YP_003808618.1| PHP domain protein [Desulfarculus baarsii DSM 2075]
 gi|301640702|gb|ADK86024.1| PHP domain protein [Desulfarculus baarsii DSM 2075]
          Length = 219

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+ +S  +GAL    ++ +  A    A+AITD 
Sbjct: 4  LHNHTLFS--DGALVPAELIQRHHALGNRAVAITDH 37


>gi|294621409|ref|ZP_06700580.1| putative phosphoesterase [Enterococcus faecium U0317]
 gi|291598982|gb|EFF30028.1| putative phosphoesterase [Enterococcus faecium U0317]
          Length = 271

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 2/42 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L VHS YS   G      +L    A +   +AI D +     
Sbjct: 5  LHVHSCYS--NGFFHPKELLSLATAQEINHLAIVDHHTFAGI 44


>gi|197262479|ref|ZP_03162553.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197240734|gb|EDY23354.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 282

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G     I 
Sbjct: 5   LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQ 127
            +    +  + + ++   N           +       +   RLI E + + ++    + 
Sbjct: 63  GVEISTVWENHEIHIVGLNIDIAHPAMRDFLAQQTERRQARSRLIAERLEKAHIPGAWEG 122

Query: 128 SVRI 131
           ++R+
Sbjct: 123 ALRL 126


>gi|187777428|ref|ZP_02993901.1| hypothetical protein CLOSPO_00995 [Clostridium sporogenes ATCC
           15579]
 gi|187774356|gb|EDU38158.1| hypothetical protein CLOSPO_00995 [Clostridium sporogenes ATCC
           15579]
          Length = 225

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 10/106 (9%)

Query: 15  QVH-SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            +H S YS L+  +SL  I+ +        + ITD  +     E    + A G   ++G 
Sbjct: 6   HIHESKYS-LDSKISLEEIVKRAKEIGLDGVCITDHESSDIMDEAHAYSKATGFLILVGA 64

Query: 74  QLDIDMQD----NLKMTNQGKTPFPTVPSIVL----LVSTAEGYQR 111
           ++     D     LK   + K     +  IV     +  +A  Y+ 
Sbjct: 65  EILTYEGDILVFGLKDIPKNKMHAKDLLRIVYENNGVAISAHPYRN 110


>gi|257061013|ref|YP_003138901.1| hypothetical protein Cyan8802_3228 [Cyanothece sp. PCC 8802]
 gi|256591179|gb|ACV02066.1| helix-hairpin-helix motif protein [Cyanothece sp. PCC 8802]
          Length = 545

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD--NRIYYS 838
            HY  EF     T ++   + ++K  Q  +  +      +  +     ++ +        
Sbjct: 438 AHYQREFDRLYSTAQLGLPDFVQKKIQ--KDTDNCPTFSTRKSSRHTDEIINLNTATQAE 495

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
           L ++ G+G  TA+ I+E    KPF SL+D   
Sbjct: 496 LESLPGIGEKTAQKIIEERQKKPFTSLDDLTR 527


>gi|218247652|ref|YP_002373023.1| helix-hairpin-helix motif protein [Cyanothece sp. PCC 8801]
 gi|218168130|gb|ACK66867.1| helix-hairpin-helix motif protein [Cyanothece sp. PCC 8801]
          Length = 545

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD--NRIYYS 838
            HY  EF     T ++   + ++K  Q  +  +      +  +     ++ +        
Sbjct: 438 AHYQREFDRLYSTAQLGLPDFVQKKIQ--KDTDNCPTFSTRKSSRHTDEIINLNTATQAE 495

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
           L ++ G+G  TA+ I+E    KPF SL+D   
Sbjct: 496 LESLPGIGEKTAQKIIEERQKKPFTSLDDLTR 527


>gi|54026152|ref|YP_120394.1| hypothetical protein nfa41810 [Nocardia farcinica IFM 10152]
 gi|54017660|dbj|BAD59030.1| putative DNA polymerase [Nocardia farcinica IFM 10152]
          Length = 351

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS++S  +G   +  ++   AA      A+TD 
Sbjct: 115 LHTHSNWS--DGGSPIEEMMRVAAALGHEYCALTDH 148


>gi|242239362|ref|YP_002987543.1| PHP domain protein [Dickeya dadantii Ech703]
 gi|242131419|gb|ACS85721.1| PHP domain protein [Dickeya dadantii Ech703]
          Length = 297

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 1  LTQYLEKSPSF-VH-LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          ++++   S SF V+ L  H++ S  +G L+   ++ +    +   +AITD + +    E 
Sbjct: 5  VSEHATPSLSFPVYDLHSHTTAS--DGVLTPAELVRRAVDMRVGVLAITDHDTIAGLQEA 62

Query: 59 SQKACAAGIQ 68
           +    + + 
Sbjct: 63 EETIRQSSLP 72


>gi|326391222|ref|ZP_08212765.1| PHP domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325992726|gb|EGD51175.1| PHP domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 336

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 20/120 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LF--------SALEFSQKA 62
           L  H++ S  +G  S   ++   A      +AITD +    L+        S  EF   A
Sbjct: 29  LHCHTTRS--DGNDSPEELIINAAKSGLKVVAITDHDVPPPLYLDTSQGRISVKEF---A 83

Query: 63  CAAGIQPI----IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
              G++ +      C   +D    L      + P        +  S  E Y++L E+++ 
Sbjct: 84  HQHGVEIVLGIEFSCDTYVDDVHILGYRMDWENPLLAEVVERMRRSKTEAYRKLCEILTA 143


>gi|295099879|emb|CBK88968.1| Predicted metal-dependent phosphoesterases (PHP family)
           [Eubacterium cylindroides T2-87]
          Length = 503

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN----NLFSALEFSQKACAAGIQP 69
           L + S+YS  +G   +  I  +    +   I+ITD N    N  +A  F   A   GIQ 
Sbjct: 213 LHIRSNYSD-DGYYDVEEIFKQAKQLKMEVISITDHNCARAN-AAATRF---AELYGIQY 267

Query: 70  IIGC 73
           I G 
Sbjct: 268 IPGV 271


>gi|138896258|ref|YP_001126711.1| hypothetical protein GTNG_2621 [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250215|ref|ZP_03148909.1| PHP domain protein [Geobacillus sp. G11MC16]
 gi|134267771|gb|ABO67966.1| PHP domain protein [Geobacillus thermodenitrificans NG80-2]
 gi|196210399|gb|EDY05164.1| PHP domain protein [Geobacillus sp. G11MC16]
          Length = 575

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA SL  + +         +AITD 
Sbjct: 340 LHMHSAWS--DGACSLEELAEACRRRGYQYMAITDH 373


>gi|315180441|gb|ADT87355.1| metal-dependent phosphoesterase YciV [Vibrio furnissii NCTC
          11218]
          Length = 283

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LFSALEFSQKACAAGIQPI 70
          L  H++ S  +G L+++ ++D+       A+AITD +    L  A           +  I
Sbjct: 6  LHSHTTAS--DGRLNVDQLIDRAVEFNLDALAITDHDTVDALAPA-RAYIAERGYSLTLI 62

Query: 71 I 71
           
Sbjct: 63 N 63


>gi|210613571|ref|ZP_03289765.1| hypothetical protein CLONEX_01972 [Clostridium nexile DSM 1787]
 gi|210151119|gb|EEA82127.1| hypothetical protein CLONEX_01972 [Clostridium nexile DSM 1787]
          Length = 219

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 11 FVHLQVH-SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
          F+ + +H S++S  +  L L+ +++        AI ITD +++    E++++       P
Sbjct: 2  FIDMHMHESTFS-KDSFLKLDEMVELAKERGLGAICITDHDDM-GLKEYAKEYSEKTGFP 59

Query: 70 IIGCQLDIDMQDNL 83
          I        +Q ++
Sbjct: 60 IFVGIEFFSLQGDI 73


>gi|302878815|ref|YP_003847379.1| PHP domain-containing protein [Gallionella capsiferriformans
          ES-2]
 gi|302581604|gb|ADL55615.1| PHP domain protein [Gallionella capsiferriformans ES-2]
          Length = 282

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L+   ++++        +A+TD ++     E    A   G+  I G 
Sbjct: 6  LHCHSNIS--DGTLTPTEVVERAFGRGVKMLALTDHDDTDGLDEARAVASGHGMIFINGV 63

Query: 74 QLDIDMQDN 82
          ++ +  + +
Sbjct: 64 EISVTWRKH 72


>gi|157374826|ref|YP_001473426.1| phosphotransferase domain-containing protein [Shewanella sediminis
           HAW-EB3]
 gi|157317200|gb|ABV36298.1| PHP C-terminal domain protein [Shewanella sediminis HAW-EB3]
          Length = 285

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 5/101 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKACAAGIQPII 71
           L  H++ S  +G L+ + ++++   +     AITD +      E     +     ++ I 
Sbjct: 10  LHSHTTAS--DGQLTPSELIERAIGNGVEMFAITDHDTTAGLAEAHTYNQRHETPLKLIN 67

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
           G         N  +   G         +   ++     + L
Sbjct: 68  GV-EISTRWHNHDIHVVGLNVDLEDIQLDDFLTNQRHLREL 107


>gi|323705039|ref|ZP_08116615.1| PHP domain protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535465|gb|EGB25240.1| PHP domain protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 570

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH+ YS  +GA +++ +++         I ITD 
Sbjct: 342 HVHTIYS--DGANTISEMVNAARDCGYKIIGITDH 374


>gi|303232096|ref|ZP_07318799.1| PHP domain protein [Veillonella atypica ACS-049-V-Sch6]
 gi|302513202|gb|EFL55241.1| PHP domain protein [Veillonella atypica ACS-049-V-Sch6]
          Length = 274

 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 65/253 (25%), Gaps = 40/253 (15%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA---------------L 56
           V   +HS++S  +G  +   +L          IA+TD + +                   
Sbjct: 3   VDFHMHSTFS--DGVETPEQLLQHAIEADLKMIALTDHDEIAGIDVMLQNNSSIQIITGC 60

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           EFS       I  +       D      +    +     +  I+     A GY      +
Sbjct: 61  EFSGHYKGKDIHILGYGFNHHDEGLRKFIEFFKEKRESRIKEIISRCI-AHGYDISFSEL 119

Query: 117 SRMYLLDQGKQSVRICLSWLQEIGT-------EGLI-----MLTGGSSGPIDRAFFFNSS 164
             +Y   +      +    +            +G++              +        +
Sbjct: 120 QNLYPNTKSYGRPHVARLLIDHGYAKDVQDVFDGILNSKSPCYIPKVKLEVPEILDIIHN 179

Query: 165 QVAEKRLLTFKKLFGDRLYVNL---------QRHRGYDRYRESQVVQLAYTHELPLVATN 215
                 L   K +  D     L           H  +D   E + + +A    L +   +
Sbjct: 180 ANGLAVLAHPKLVRNDEYVAELLNYSFDGVEVYHSKHDYDDEIKYLTMAKERNLFVTGGS 239

Query: 216 NSLFLSEEDYEAH 228
           +   +    Y  H
Sbjct: 240 DYHGI-PNRYPYH 251


>gi|16760159|ref|NP_455776.1| hypothetical protein STY1329 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29142070|ref|NP_805412.1| hypothetical protein t1634 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|25323500|pir||AG0653 conserved hypothetical protein STY1329 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502453|emb|CAD08410.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137699|gb|AAO69261.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 293

 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 8/124 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G     I 
Sbjct: 16  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 73

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQ 127
            +    +  + + ++   N           +       +   RLI E + + ++    + 
Sbjct: 74  GVEISTVWENHEIHIVGLNIDIAHPAMRDFLAQQTHRRQARGRLIAERLEKAHIPGAWEG 133

Query: 128 SVRI 131
           ++R+
Sbjct: 134 ALRL 137


>gi|218295448|ref|ZP_03496261.1| PHP domain protein [Thermus aquaticus Y51MC23]
 gi|218244080|gb|EED10606.1| PHP domain protein [Thermus aquaticus Y51MC23]
          Length = 575

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 66/221 (29%), Gaps = 32/221 (14%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALEFSQKACAAGIQPI 70
           LQVHS+YS  +G  +L  +           +A+TD +    +       +      I+ I
Sbjct: 341 LQVHSTYS--DGQNTLEELWQAARELGYEYLAVTDHSPAVRVAGGPSAEEALKR--IEAI 396

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFP--TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK-Q 127
                       L        P      P  VL             LVS   +  Q K  
Sbjct: 397 RRFNEAHGPPYLLAGAEVDIRPDGSLDYPDWVLRELDIV-------LVS---IHSQFKLP 446

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY--VN 185
                   L+ +    + +L          A         E     ++ +F   L   V 
Sbjct: 447 KADQTRRILKALENPFVHVL------AHPTARLLGRRPPIEA---DWEAIFQKALERGVA 497

Query: 186 LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDY 225
           ++    YDR      + ++AY   L +  + ++  L    +
Sbjct: 498 VEIDGYYDRMDLPDDLARMAYGMGLWVSLSTDAHQLDHLRF 538


>gi|260768738|ref|ZP_05877672.1| putative metal-dependent phosphoesterase YciV [Vibrio furnissii
          CIP 102972]
 gi|260616768|gb|EEX41953.1| putative metal-dependent phosphoesterase YciV [Vibrio furnissii
          CIP 102972]
          Length = 283

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LFSALEFSQKACAAGIQPI 70
          L  H++ S  +G L+++ ++D+       A+AITD +    L  A           +  I
Sbjct: 6  LHSHTTAS--DGRLNVDQLIDRAVEFNLDALAITDHDTVDALAPA-RAYIAERGYSLTLI 62

Query: 71 I 71
           
Sbjct: 63 N 63


>gi|302536726|ref|ZP_07289068.1| PHP domain-containing protein [Streptomyces sp. C]
 gi|302445621|gb|EFL17437.1| PHP domain-containing protein [Streptomyces sp. C]
          Length = 288

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++   AA     +A+TD + +    E    A  AG+  + G 
Sbjct: 5  LHAHSTAS--DGTDTPAELVRNAAAAGLDVVALTDHDTVGGYAEAI-AALPAGLTLVTGA 61

Query: 74 QLDIDMQ 80
          +L   + 
Sbjct: 62 ELSCRLD 68


>gi|325677365|ref|ZP_08157030.1| DNA polymerase beta chain [Rhodococcus equi ATCC 33707]
 gi|325551828|gb|EGD21525.1| DNA polymerase beta chain [Rhodococcus equi ATCC 33707]
          Length = 341

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS +S  +G   ++ ++   A       A+TD 
Sbjct: 104 LHVHSDWS--DGGSPIDEMMRAAATLGHEYCALTDH 137


>gi|303244377|ref|ZP_07330713.1| PHP domain protein [Methanothermococcus okinawensis IH1]
 gi|302485272|gb|EFL48200.1| PHP domain protein [Methanothermococcus okinawensis IH1]
          Length = 296

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 9/86 (10%)

Query: 5  LEKSPSFVHLQVHSSYS---------LLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          +E   S   L +HS YS           +      NI+          IA+TD N +   
Sbjct: 1  MENKYSKADLHIHSKYSGVMKYMGFKFPDSVEEPRNIMKYAKKKGLDVIAVTDHNTIKGG 60

Query: 56 LEFSQKACAAGIQPIIGCQLDIDMQD 81
          LE  +     GI  ++G ++     +
Sbjct: 61 LETKKLEKEFGIDVVVGSEIMTKDGE 86


>gi|300716951|ref|YP_003741754.1| metal-dependent phosphoesterases [Erwinia billingiae Eb661]
 gi|299062787|emb|CAX59907.1| metal-dependent phosphoesterases [Erwinia billingiae Eb661]
          Length = 303

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+  S  +G L+   ++ +    +   +AITD + +       +      +   +  
Sbjct: 27 LHSHTRAS--DGLLTPEELVLRAVEHRVGVLAITDHDTIDGVQPAREAIAKHQLPLKLMA 84


>gi|293374528|ref|ZP_06620850.1| PHP domain protein [Turicibacter sanguinis PC909]
 gi|292646907|gb|EFF64895.1| PHP domain protein [Turicibacter sanguinis PC909]
          Length = 267

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH++ S  + +LS    L          +AIT+ + +    E        GI+ I G 
Sbjct: 5  LHVHTNIS--DSSLSTEATLLLAKERGLTHVAITNHDTVMGLKEAIALGKMIGIEVIPGI 62

Query: 74 QLD-IDMQDNLKMTNQGKTPFPTVPSI 99
          ++   D   ++K    G       P I
Sbjct: 63 EISAYDFNRHVKAHILGYNFDLEAPHI 89


>gi|320095769|ref|ZP_08027415.1| PHP domain protein [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977299|gb|EFW08996.1| PHP domain protein [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 287

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 70/252 (27%), Gaps = 43/252 (17%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             HSSYS  +G  +   ++          + +TD +      E +      G+  + G +
Sbjct: 13  HTHSSYS--DGTDAPAQLMRAARDAGLSMVGLTDHDTFAGWDEAAAAVGETGVALLRGVE 70

Query: 75  LDI--------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
           +                D  D        +T          +V        +       +
Sbjct: 71  ISCSADGITVHLLGYLVDPADAALNGAFARTVEDRRTRARRMVDNLAADFPITWEQVLAF 130

Query: 121 LLDQGK-QSVRICLSWLQ-----EIGTEGLIML--TGGS----------------SGPID 156
               G      I  + +      +  +  +  L  +G                   G   
Sbjct: 131 APSDGPVGRPHIADALVAAGAFPDRDSAFVHALHPSGPYYARHWAPDPVDAVRMVRGAGG 190

Query: 157 RAFFFNSSQVAEKRLLT---FKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVA 213
                +    A +RLL     +++    LY   + HR +D    + V +LA    L +  
Sbjct: 191 VPVLAHPRARARQRLLPEDVIERMAEAGLYGIERDHRDHDEAGRADVDRLAARLGLAITG 250

Query: 214 TNNSLFLSEEDY 225
           +++     + + 
Sbjct: 251 SSDYHGTGKPNR 262


>gi|237745673|ref|ZP_04576153.1| metal-dependent phosphoesterase [Oxalobacter formigenes HOxBLS]
 gi|229377024|gb|EEO27115.1| metal-dependent phosphoesterase [Oxalobacter formigenes HOxBLS]
          Length = 277

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L  HS  S  +G L+   ++ + +A+    +A+TD + +   
Sbjct: 6  LHSHSRVS--DGVLTPAELVRRASANGVRMLALTDHDEVAGV 45


>gi|73667901|ref|YP_303916.1| isoleucyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
 gi|72395063|gb|AAZ69336.1| isoleucyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
          Length = 224

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L VHS YS  +   S ++IL           AI D + +   L   ++A   G++
Sbjct: 5  LHVHSEYS-KDSKSSHDDILKIARKRGLDGFAICDHDTVEGGLICKKRALELGLE 58


>gi|325841143|ref|ZP_08167268.1| PHP domain protein [Turicibacter sp. HGF1]
 gi|325490000|gb|EGC92346.1| PHP domain protein [Turicibacter sp. HGF1]
          Length = 267

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH++ S  + +LS    L          +AIT+ + +    E        GI+ I G 
Sbjct: 5  LHVHTNIS--DSSLSTEATLLLAKERGLTHVAITNHDTVMGLKEAIALGKMIGIEVIPGI 62

Query: 74 QLD-IDMQDNLKMTNQGKTPFPTVPSI 99
          ++   D   ++K    G       P I
Sbjct: 63 EISAYDFNRHVKAHILGYNFDLEAPHI 89


>gi|319942357|ref|ZP_08016671.1| hypothetical protein HMPREF9464_01890 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804045|gb|EFW00953.1| hypothetical protein HMPREF9464_01890 [Sutterella wadsworthensis
           3_1_45B]
          Length = 332

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 2   TQYLEKSPSFV---HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
            + ++   SFV    L +HS+ S  +G L    ++   A +    +++TD + +    E 
Sbjct: 36  AKRVQSFKSFVVTIDLHMHSNAS--DGILPPAEVVRLCAGNGVKLMSLTDHDTMKGIEEA 93

Query: 59  SQKACAAGIQPII 71
             +A   GI  + 
Sbjct: 94  RAEAERLGIAFVP 106


>gi|124025710|ref|YP_001014826.1| metal-dependent phosphoesterase [Prochlorococcus marinus str.
          NATL1A]
 gi|123960778|gb|ABM75561.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Prochlorococcus marinus str. NATL1A]
          Length = 231

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          +  P+ ++  +HS+YS  +G+LS   I ++         AITD +++
Sbjct: 31 DSCPNSINFHMHSTYS--DGSLSPKEIYNQALELNIDHYAITDHHSV 75


>gi|319779408|ref|YP_004130321.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Taylorella equigenitalis MCE9]
 gi|317109432|gb|ADU92178.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Taylorella equigenitalis MCE9]
          Length = 278

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +G+ S + +     +      ++TD + L      S+KA   GI+ + 
Sbjct: 4  VDLHCHSTAS--DGSYSPDELAVIAKSKNVDIWSLTDHDVLSGQERASKKAQELGIKYVS 61

Query: 72 GC 73
          G 
Sbjct: 62 GV 63


>gi|260893320|ref|YP_003239417.1| PHP domain protein [Ammonifex degensii KC4]
 gi|260865461|gb|ACX52567.1| PHP domain protein [Ammonifex degensii KC4]
          Length = 273

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L VH+  S  +GA +   ++ +  +     IA+TD + +
Sbjct: 7  LHVHTMAS--DGAETPAEVVARAKSIGLAGIAVTDHDTV 43


>gi|195873181|ref|ZP_02696735.2| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|200389821|ref|ZP_03216432.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|213163147|ref|ZP_03348857.1| hypothetical protein Salmoneentericaenterica_25223 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213424438|ref|ZP_03357251.1| hypothetical protein SentesTyphi_01485 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213855223|ref|ZP_03383463.1| hypothetical protein SentesT_14587 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289829087|ref|ZP_06546767.1| hypothetical protein Salmonellentericaenterica_21269 [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|195633902|gb|EDX52254.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|199602266|gb|EDZ00812.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 282

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 8/124 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G     I 
Sbjct: 5   LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQ 127
            +    +  + + ++   N           +       +   RLI E + + ++    + 
Sbjct: 63  GVEISTVWENHEIHIVGLNIDIAHPAMRDFLAQQTHRRQARGRLIAERLEKAHIPGAWEG 122

Query: 128 SVRI 131
           ++R+
Sbjct: 123 ALRL 126


>gi|323706217|ref|ZP_08117784.1| PHP domain protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534381|gb|EGB24165.1| PHP domain protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 259

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH+ YS  +GA +++ +++         I ITD 
Sbjct: 133 HVHTIYS--DGANTISEMVNAARDCGYKIIGITDH 165


>gi|291279852|ref|YP_003496687.1| hypothetical protein DEFDS_1471 [Deferribacter desulfuricans
          SSM1]
 gi|290754554|dbj|BAI80931.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 277

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          L  HS+YS  +G L+ + ++          +A+TD + +     F
Sbjct: 4  LHTHSTYS--DGTLAPDELIRLAECKNIKMLALTDHDTVNGIDNF 46


>gi|289523842|ref|ZP_06440696.1| cell division topological specificity factor MinE [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502498|gb|EFD23662.1| cell division topological specificity factor MinE [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 615

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 78/232 (33%), Gaps = 19/232 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ+HS++S  +G   L  +++K     +  I ITD +             A G+ P    
Sbjct: 376 LQIHSNWS--DGKRPLKEMVEKACELGRSYILITDHSQGLGV--------AKGLTPDRLM 425

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           Q   ++ D L     GK        + +    +  Y   + L S   ++     ++R   
Sbjct: 426 QQWREI-DELNEMLAGKIVILKGTEVEVKADGSLDYDDEL-LKSFDVVVAAVHSNLRQDR 483

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRA--FFFNSSQVAEKRLLT-FKKLFGDRLYVNLQRHR 190
           + L E        ++      +       F S + AE      F+        + +  H 
Sbjct: 484 AQLTERYIR---AISHPLVHILAHPTGRLFGSREEAEADWEEIFQTAASTGTLLEINAHP 540

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                 E ++ Q A+      V + ++  + E++Y    V  A      V  
Sbjct: 541 SRLDLSEKRIRQ-AFNLGCKFVISTDAHDIYEQEYMFFGVAQARRAWLTVED 591


>gi|152991703|ref|YP_001357424.1| DNA uptake protein [Sulfurovum sp. NBC37-1]
 gi|151423564|dbj|BAF71067.1| DNA uptake protein [Sulfurovum sp. NBC37-1]
          Length = 111

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
           L  IKG+G   A  I++      F S EDF  
Sbjct: 33  LMQIKGIGEKKADAIIKERKKGKFKSFEDFQR 64


>gi|126465640|ref|YP_001040749.1| phosphotransferase domain-containing protein [Staphylothermus
          marinus F1]
 gi|126014463|gb|ABN69841.1| PHP C-terminal domain protein [Staphylothermus marinus F1]
          Length = 228

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +HS+YS  +G  S   I+          I+ITD N+   ++  S+ A  
Sbjct: 9  HIHSTYS--DGRASPKEIILTAIYKGLNIISITDHNSFQGSIIASRLAKD 56


>gi|291532879|emb|CBL05992.1| hypothetical protein MHY_10070 [Megamonas hypermegale ART12/1]
          Length = 53

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 10 SFVHLQVHSSYSLLEGALSLN 30
           F HL VH+ YSLL+GA  + 
Sbjct: 17 DFTHLHVHTEYSLLDGASRVK 37


>gi|323492458|ref|ZP_08097606.1| hypothetical protein VIBR0546_15516 [Vibrio brasiliensis LMG 20546]
 gi|323313245|gb|EGA66361.1| hypothetical protein VIBR0546_15516 [Vibrio brasiliensis LMG 20546]
          Length = 288

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 7/105 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L  N ++D+  + Q   +AITD + +              +      
Sbjct: 5   LHSHTTAS--DGRLPPNELIDRALSFQLDVLAITDHDTVDGLAPAHHYIKENNLPLKLIN 62

Query: 70  -IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
            I    +  +   ++   N           I       EG   LI
Sbjct: 63  GIEISTVWQNKDIHIVGLNIDPDSQALNALIEQQKKHREGRAELI 107


>gi|307331743|ref|ZP_07610847.1| PHP domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306882609|gb|EFN13691.1| PHP domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 284

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          L  HS+ S  +G  +   ++   AA     +A+TD + +    E ++ 
Sbjct: 5  LHTHSTAS--DGTDTPAELVRNAAAAGLDVVALTDHDTVGGYAEATRA 50


>gi|167630611|ref|YP_001681110.1| phosphoesterase php, n-terminal, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167593351|gb|ABZ85099.1| phosphoesterase php, n-terminal, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 291

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 73/205 (35%), Gaps = 24/205 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H++ S  +G  S   ILD         ++ITD  ++   LE +  A   GI+ I G 
Sbjct: 16  LHLHTTVS--DGLHSPMEILDMAVQAGLTTLSITDHESIEGCLEIAGAADKKGIRVIPGV 73

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           +L +    N                +  L    +  + ++   +   L     Q + I L
Sbjct: 74  ELLVTYAGNEIHLLGYGMDLTDGSFLQRLAELRQA-RNIVAEQTVRNL-----QKLGIPL 127

Query: 134 SWLQEI---GTEGLIMLTGGSSGPIDRAFFFNS--SQVAEKRLLTFKKLFGDRLYVNLQR 188
           +W   +      G I     S G I  A       +  A++ +  +  L  D L      
Sbjct: 128 AWEDVVSIAHPRGAI-----SKGHIIHALHLGGLLTHPAQEFIRLY--LSRDGLAHVEYN 180

Query: 189 HRGYDRYRESQVVQLAYTHELPLVA 213
              +D+  E+    +     +P+VA
Sbjct: 181 SNSFDQGVET----IKSAGGVPIVA 201


>gi|148981775|ref|ZP_01816523.1| putative metal-dependent phosphoesterase YciV [Vibrionales
          bacterium SWAT-3]
 gi|145960742|gb|EDK26081.1| putative metal-dependent phosphoesterase YciV [Vibrionales
          bacterium SWAT-3]
          Length = 289

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H++ S  +G L+   ++D+  +    A+AITD +      E         + 
Sbjct: 5  LHSHTTAS--DGRLTPPELIDRALSFNIEALAITDHDTTDGLAEARNYIADNNLP 57


>gi|77918819|ref|YP_356634.1| hypothetical protein Pcar_1215 [Pelobacter carbinolicus DSM 2380]
 gi|77544902|gb|ABA88464.1| histidinol phosphatase/PHP family hydrolase [Pelobacter
          carbinolicus DSM 2380]
          Length = 217

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  H+ +S  +G L    +  + A     AI ITD  
Sbjct: 4  LHTHTVFS--DGELIPAELTRRAAVAGYRAIGITDHG 38


>gi|84489978|ref|YP_448210.1| hypothetical protein Msp_1186 [Methanosphaera stadtmanae DSM
          3091]
 gi|84373297|gb|ABC57567.1| predicted hydrolase [Methanosphaera stadtmanae DSM 3091]
          Length = 223

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS +S  +G L  + +  +       A+AITD 
Sbjct: 9  LHTHSIFS--DGELLPSELARRADVLGHKALAITDH 42


>gi|205360264|ref|ZP_02682030.2| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205351027|gb|EDZ37658.1| putative phosphoesterase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 282

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 8/124 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G     I 
Sbjct: 5   LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQ 127
            +    +  + + ++   N           +       +   RLI E + + ++    + 
Sbjct: 63  GVEISTVWENHEIHIVGLNIDIAHPAMRDFLAQQTHRRQARGRLIAERLEKAHIPGAWEG 122

Query: 128 SVRI 131
           ++R+
Sbjct: 123 ALRL 126


>gi|90408506|ref|ZP_01216664.1| PHP domain containing protein (TRPH) [Psychromonas sp. CNPT3]
 gi|90310385|gb|EAS38512.1| PHP domain containing protein (TRPH) [Psychromonas sp. CNPT3]
          Length = 286

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  HS+ S  +G L+   ++ + A  Q   +A+TD + +       +     G++
Sbjct: 5  LHSHSTAS--DGQLTPQELVIRAANRQVDILALTDHDTIDGLAPAHKAIADLGLK 57


>gi|213024603|ref|ZP_03339050.1| hypothetical protein Salmonelentericaenterica_19786 [Salmonella
          enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 92

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G+
Sbjct: 5  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGL 56


>gi|53802475|ref|YP_112891.1| phosphotransferase domain-containing protein [Methylococcus
          capsulatus str. Bath]
 gi|53756236|gb|AAU90527.1| PHP domain protein [Methylococcus capsulatus str. Bath]
          Length = 277

 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L  HS+ S  +G LS   ++    A     +A+TD +++
Sbjct: 4  LHAHSTAS--DGTLSPTELVRAATAGGIRTLALTDHDSV 40


>gi|312136822|ref|YP_004004159.1| php domain protein [Methanothermus fervidus DSM 2088]
 gi|311224541|gb|ADP77397.1| PHP domain protein [Methanothermus fervidus DSM 2088]
          Length = 216

 Score = 48.4 bits (114), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L +HS +S  +G L  + I  +       AIAITD 
Sbjct: 6  LHIHSIFS--DGDLIPSEIARRAKFLGHEAIAITDH 39


>gi|294495190|ref|YP_003541683.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
 gi|292666189|gb|ADE36038.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
          Length = 211

 Score = 48.4 bits (114), Expect = 0.007,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+ +S  +G L  +  + +       AI +TD 
Sbjct: 4  LHTHTIFS--DGELIPSEQVRRAKTLGYEAIGLTDH 37


>gi|13541145|ref|NP_110833.1| RNA-binding protein [Thermoplasma volcanium GSS1]
 gi|14324531|dbj|BAB59458.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 182

 Score = 48.4 bits (114), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
           N   +SL  + G+G  T   I+E    KPFDS ED  +RV S    ++++
Sbjct: 112 NARLHSLELLPGLGNKTMWAILEERKKKPFDSFEDLVNRVKSIHNPQKMI 161


>gi|320531828|ref|ZP_08032746.1| PHP domain protein [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135956|gb|EFW27986.1| PHP domain protein [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 281

 Score = 48.4 bits (114), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            HS+ S  +G  S   ++ + A      + +TD + +    E ++    +G+  + G +
Sbjct: 6  HTHSACS--DGTDSPAGLMAQAAGAGLDVVGLTDHDTMAGWDEAARAVPDSGVALLRGTE 63

Query: 75 LDIDMQ 80
          +     
Sbjct: 64 ISCAAD 69


>gi|300865126|ref|ZP_07109951.1| PHP domain protein [Oscillatoria sp. PCC 6506]
 gi|300336897|emb|CBN55101.1| PHP domain protein [Oscillatoria sp. PCC 6506]
          Length = 237

 Score = 48.4 bits (114), Expect = 0.007,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
           +H+  S  +G L  + +++   A     +AITD ++     + 
Sbjct: 41 HLHTVCS--DGQLRPDELMESAIAIGLKGLAITDHHSTNGYFQA 82


>gi|113475538|ref|YP_721599.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Trichodesmium erythraeum IMS101]
 gi|110166586|gb|ABG51126.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Trichodesmium erythraeum IMS101]
          Length = 545

 Score = 48.4 bits (114), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 8/105 (7%)

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMD----NVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
           ++  +++ +  H+  EF     T  M      ++K++K  Q+      ++    +     
Sbjct: 426 LLVIESSTVAAHFEREFQRLYQTATMGIPSWLIKKVEKQQQEC---GDRLTKTEIFLTNT 482

Query: 827 DFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
           + K+  N      L  + GVG   A  I++A  +KPF SL D   
Sbjct: 483 NNKINLNTATAEELETLPGVGPKLAERIIQARKNKPFTSLADLDQ 527


>gi|150390417|ref|YP_001320466.1| phosphotransferase domain-containing protein [Alkaliphilus
          metalliredigens QYMF]
 gi|149950279|gb|ABR48807.1| PHP C-terminal domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 276

 Score = 48.4 bits (114), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
          ++ +  H++ S  +G LS + ++D   A     IAITD +++    E   ++   
Sbjct: 3  YIDMHTHTTAS--DGNLSPSQLIDYAVAKGLNGIAITDHDSINGLEEAQLQSRKY 55


>gi|126696317|ref|YP_001091203.1| metal-dependent phosphoesterase [Prochlorococcus marinus str. MIT
          9301]
 gi|126543360|gb|ABO17602.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Prochlorococcus marinus str. MIT 9301]
          Length = 215

 Score = 48.4 bits (114), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             P+ ++   H+ +S  +G+L    +LD+   +    ++ITD +     ++  +     
Sbjct: 16 NSCPNNINFHCHTKFS--DGSLEPYELLDQAYKNNLKFLSITDHHT----IKAHEYIKKN 69

Query: 66 GI 67
           I
Sbjct: 70 NI 71


>gi|188026070|ref|ZP_02960761.2| hypothetical protein PROSTU_02729 [Providencia stuartii ATCC
          25827]
 gi|188021500|gb|EDU59540.1| hypothetical protein PROSTU_02729 [Providencia stuartii ATCC
          25827]
          Length = 282

 Score = 48.4 bits (114), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          L  H+  S  +G LS   ++++        ++ITD +     +E 
Sbjct: 6  LHCHTQAS--DGDLSPIEVVERAIEMGVNVLSITDHDTCEGVIEA 48


>gi|172037262|ref|YP_001803763.1| hypothetical protein cce_2347 [Cyanothece sp. ATCC 51142]
 gi|171698716|gb|ACB51697.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 230

 Score = 48.4 bits (114), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +H+  S  +G L+   ++ +        +AITD ++    +E  + A  
Sbjct: 36 HMHTICS--DGQLTPEQLIQQATRIGLKGLAITDHHS----VEGYKIAQK 79


>gi|91773173|ref|YP_565865.1| hypothetical protein Mbur_1192 [Methanococcoides burtonii DSM
          6242]
 gi|91712188|gb|ABE52115.1| Hypothetical protein with PHP domain [Methanococcoides burtonii
          DSM 6242]
          Length = 212

 Score = 48.4 bits (114), Expect = 0.007,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+ +S  +G L  + ++ +        I ITD 
Sbjct: 4  LHTHTIFS--DGELIPSELVRRAVTFGYRGIGITDH 37


>gi|150390915|ref|YP_001320964.1| phosphotransferase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950777|gb|ABR49305.1| PHP C-terminal domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 575

 Score = 48.4 bits (114), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VHS YS  +G  S+  I+     +    I I+D 
Sbjct: 342 HVHSHYS--DGVNSIEEIVQAAIKEGFQYIGISDH 374


>gi|88798245|ref|ZP_01113831.1| predicted metal-dependent phosphoesterase (PHP family) protein
          [Reinekea sp. MED297]
 gi|88779021|gb|EAR10210.1| predicted metal-dependent phosphoesterase (PHP family) protein
          [Reinekea sp. MED297]
          Length = 303

 Score = 48.4 bits (114), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 6/57 (10%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +  HS +S  +G LS   +L +  A     +A+TD +         + A    + P
Sbjct: 10 EMHCHSRFS--DGRLSPEALLAEAQAKGVEHLALTDHDT----ARGYRYAVDQQLVP 60


>gi|289673962|ref|ZP_06494852.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae
          FF5]
          Length = 32

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 6/31 (19%), Positives = 13/31 (41%)

Query: 8  SPSFVHLQVHSSYSLLEGALSLNNILDKIAA 38
          +  +  L   S++S   GA S   + ++   
Sbjct: 2  TSEYAELHCLSNFSFQRGASSARELFERAVR 32


>gi|291084641|ref|ZP_06540538.2| hypothetical protein Salmonellaentericaenterica_38137 [Salmonella
          enterica subsp. enterica serovar Typhi str. AG3]
          Length = 172

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G+
Sbjct: 5  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGL 56


>gi|238020975|ref|ZP_04601401.1| hypothetical protein GCWU000324_00872 [Kingella oralis ATCC 51147]
 gi|237867955|gb|EEP68961.1| hypothetical protein GCWU000324_00872 [Kingella oralis ATCC 51147]
          Length = 283

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 3/111 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +GAL+   ++   A +    +A+TD ++     E   +A    IQ I G 
Sbjct: 4   LHTHSTIS--DGALTPTQLVQAAAQNGCRLLALTDHDHTGGLAEARAEAARHRIQFINGA 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY-QRLIELVSRMYLLD 123
           ++ +  +                    LL    +G   RL ++ +++    
Sbjct: 62  EISVTWRHRTIHIVALDFDEHNSRLQTLLAQVRQGRIARLHQIAAKLAKHG 112


>gi|297202203|ref|ZP_06919600.1| PHP domain-containing protein [Streptomyces sviceus ATCC 29083]
 gi|197713646|gb|EDY57680.1| PHP domain-containing protein [Streptomyces sviceus ATCC 29083]
          Length = 285

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +G  +   ++   AA     +A+TD +      E    A  AG+  + 
Sbjct: 3  VDLHCHSTAS--DGTDTPAELVRNAAAAGLDVVALTDHDTTRGYGEAI-AALPAGLTLVT 59

Query: 72 GCQLDI 77
          G +L  
Sbjct: 60 GAELSC 65


>gi|297624702|ref|YP_003706136.1| PHP domain-containing protein [Truepera radiovictrix DSM 17093]
 gi|297165882|gb|ADI15593.1| PHP domain protein [Truepera radiovictrix DSM 17093]
          Length = 583

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             H+++S  +GA SL+ ++    A     +A+ D 
Sbjct: 342 HNHTTWS--DGACSLDEMVAAARALGYRYLALADH 374


>gi|239827969|ref|YP_002950593.1| hypothetical protein GWCH70_2633 [Geobacillus sp. WCH70]
 gi|239808262|gb|ACS25327.1| PHP domain protein [Geobacillus sp. WCH70]
          Length = 572

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +         +AITD 
Sbjct: 340 LHMHSTWS--DGACSIEEMAEACRKKGYRYMAITDH 373


>gi|315924838|ref|ZP_07921055.1| fructose-bisphosphate aldolase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621737|gb|EFV01701.1| fructose-bisphosphate aldolase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 601

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 4   YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN-------LFSA- 55
            ++++P  V L  HS+ S  +G  +   ++D  A      +A+TD +        +    
Sbjct: 280 QMDRAPYAVDLHTHSTRS--DGGDTPQELIDNAAKRGVRVLALTDHDVIPPQKIEVNGIM 337

Query: 56  LEFSQKACAAGIQPIIGCQLDID 78
           ++    A   GIQ I G +   +
Sbjct: 338 VDPIAYAKTKGIQFIPGIEFSCE 360


>gi|294496067|ref|YP_003542560.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
 gi|292667066|gb|ADE36915.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
          Length = 221

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 38/100 (38%), Gaps = 1/100 (1%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VHS +S  +     ++IL+    +    +AI D +++      +++A       ++  
Sbjct: 5   LHVHSCFSD-DSNSQFDSILEWAKKNGIDGVAICDHDSVEGGFACARRASEIASDILVIP 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
             ++   +   +        P   S++  +  A     L+
Sbjct: 64  GQEVSSAEGHVLVLGASESVPAAMSVLSTIKYAHDLGGLV 103


>gi|188586429|ref|YP_001917974.1| PHP domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351116|gb|ACB85386.1| PHP domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 571

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++++  +GA  L +++D         IAITD 
Sbjct: 341 LHIHTNWT--DGAGDLQDMVDGAKNMGYEYIAITDH 374


>gi|111020472|ref|YP_703444.1| hypothetical protein RHA1_ro03483 [Rhodococcus jostii RHA1]
 gi|110820002|gb|ABG95286.1| possible DNA polymerase [Rhodococcus jostii RHA1]
          Length = 338

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G   +  ++ + AA      AITD 
Sbjct: 100 LHTHSDWS--DGRCPIREMMRRAAALGHEYCAITDH 133


>gi|157961470|ref|YP_001501504.1| phosphotransferase domain-containing protein [Shewanella pealeana
          ATCC 700345]
 gi|157846470|gb|ABV86969.1| PHP domain protein [Shewanella pealeana ATCC 700345]
          Length = 292

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--KACAAGIQP 69
          V L  H++ S  +G L+ + ++++  +      AITD +     +E  +  +A    ++ 
Sbjct: 14 VDLHSHTTAS--DGQLTPSQLIERAISKGVHMFAITDHDTTDGLIEAHEFNRAHETPLEL 71

Query: 70 IIGC 73
          I G 
Sbjct: 72 INGV 75


>gi|319936965|ref|ZP_08011375.1| PHP domain-containing protein [Coprobacillus sp. 29_1]
 gi|319807901|gb|EFW04480.1| PHP domain-containing protein [Coprobacillus sp. 29_1]
          Length = 278

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +  L VH+++S  +G   + ++L          IAITD + +    E  +     GI+ I
Sbjct: 3  YADLHVHTNHS--DGTKEIRDVLMMAKEKGIQRIAITDHDTIDHLDEVKRLGEELGIRTI 60

Query: 71 IGCQLDIDMQDNLKMTN 87
           G ++    +D  K  +
Sbjct: 61 RGVEMSCYDEDVAKKIH 77


>gi|319651780|ref|ZP_08005906.1| hypothetical protein HMPREF1013_02518 [Bacillus sp. 2_A_57_CT2]
 gi|317396599|gb|EFV77311.1| hypothetical protein HMPREF1013_02518 [Bacillus sp. 2_A_57_CT2]
          Length = 572

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  +++   A     +AITD 
Sbjct: 340 LHMHSTWS--DGAYSIEEMIEACRARGYKYMAITDH 373


>gi|33240406|ref|NP_875348.1| PHP family metal-dependent phosphoesterase [Prochlorococcus
          marinus subsp. marinus str. CCMP1375]
 gi|33237933|gb|AAQ00001.1| PHP family metal-dependent phosphoesterase [Prochlorococcus
          marinus subsp. marinus str. CCMP1375]
          Length = 217

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
             P  ++   HS+ S  +G+++  +++ + +  +   +A+TD +N+
Sbjct: 18 NSCPRHINFHCHSTLS--DGSMNPIDLIVQASKLKLKHLAVTDHHNI 62


>gi|33862998|ref|NP_894558.1| hypothetical protein PMT0726 [Prochlorococcus marinus str. MIT
          9313]
 gi|33634915|emb|CAE20901.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
          9313]
          Length = 218

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          E  P+ ++   H+  S  +G+L    ++ + +      IAITD ++
Sbjct: 18 ESCPNIMNFHCHTICS--DGSLEPELLIAQASQRGLQHIAITDHHS 61


>gi|297562764|ref|YP_003681738.1| PHP domain protein [Nocardiopsis dassonvillei subsp. dassonvillei
          DSM 43111]
 gi|296847212|gb|ADH69232.1| PHP domain protein [Nocardiopsis dassonvillei subsp. dassonvillei
          DSM 43111]
          Length = 291

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          L  HS  S+ +G  +   +++   A     +A+TD + +    E +Q
Sbjct: 6  LHAHS--SVSDGTDTPAEVVEHAVAAGLDVLALTDHDTVGGIGEAAQ 50


>gi|213586721|ref|ZP_03368547.1| hypothetical protein SentesTyph_37755 [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-0664]
          Length = 269

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G+
Sbjct: 5  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGL 56


>gi|302390064|ref|YP_003825885.1| PHP domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302200692|gb|ADL08262.1| PHP domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 286

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 80/242 (33%), Gaps = 27/242 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H++ S  +G      +L K+ +      A+TD +   +  E +  A   G++ I G 
Sbjct: 18  LHIHTTAS--DGTWRPKTLLKKLISAGIKLFAVTDHDTTENLAETAALAKEYGLKFINGV 75

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           +++    ++                  LL       ++L+E      +    ++   +C 
Sbjct: 76  EVNTTYNNHNYHILGLGIQPENEELQRLLKRN----RQLMEEKDDESIKYLERKYPIVCF 131

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              +E              G     +  +     +K   ++K  F     +       ++
Sbjct: 132 DEYKEYKNN------PDRGGWKALNYLID-----KKLCRSYKDFFS----LFGDWGNPFE 176

Query: 194 RYRE----SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
           +         +  +     +P++A +      ++DY+A  +   +       +   P  +
Sbjct: 177 KLEFVSPGEAIKAICMAGGVPVLA-HPGASFYDKDYKAL-ITFMIGEGIRGIECYHPENS 234

Query: 250 PD 251
           P+
Sbjct: 235 PE 236


>gi|302542714|ref|ZP_07295056.1| PHP domain N- region family protein [Streptomyces hygroscopicus
          ATCC 53653]
 gi|302460332|gb|EFL23425.1| PHP domain N- region family protein [Streptomyces himastatinicus
          ATCC 53653]
          Length = 291

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
          L  HS+ S  +G  +   ++   AA     +A+TD + +       ++A  A
Sbjct: 5  LHTHSTAS--DGTDTPAELVRNAAAAGLDVVALTDHDTVGG----YEEAAGA 50


>gi|253584021|ref|ZP_04861219.1| histidinol phosphate phosphatase HisJ family [Fusobacterium
          varium ATCC 27725]
 gi|251834593|gb|EES63156.1| histidinol phosphate phosphatase HisJ family [Fusobacterium
          varium ATCC 27725]
          Length = 268

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           VHS +S  +    +  I+ K  +     IAITD 
Sbjct: 7  HVHSEFS-GDSTQDMEEIVQKAISLGLQEIAITDH 40


>gi|260886992|ref|ZP_05898255.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Selenomonas sputigena ATCC 35185]
 gi|260863054|gb|EEX77554.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Selenomonas sputigena ATCC 35185]
          Length = 261

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 4/57 (7%)

Query: 29 LNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPIIGCQLDIDMQD 81
             ++          IAITD + +       ++    A   GI P I      + ++
Sbjct: 3  PEELVAAAKEAGLRYIAITDHDTVDGVTHLYEEGLLPAKGIGIIPGIEFSAHHEKRE 59


>gi|269986505|gb|EEZ92790.1| protein of unknown function DUF655 [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 176

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 17/93 (18%)

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI----YYSLAAIKGVGTTTARHIM 854
            +KI +   +             N       +          +SLA I G G    + IM
Sbjct: 84  TDKIHEIVAE-------------NESNYISIINRLGPINVRLHSLALIPGAGKKMVQKIM 130

Query: 855 EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           E  +   F S +DF  RV       + +E+ + 
Sbjct: 131 EERSKGEFKSYKDFDDRVGFTSGIAKSIENRIK 163


>gi|313125440|ref|YP_004035704.1| metal-dependent phosphoesterase, php family [Halogeometricum
           borinquense DSM 11551]
 gi|312291805|gb|ADQ66265.1| predicted metal-dependent phosphoesterase, PHP family
           [Halogeometricum borinquense DSM 11551]
          Length = 259

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            VHS  S  +    +  IL++ A     A+ ITD + +  ++  ++ A   G+  I G +
Sbjct: 10  HVHSDASY-DAHDPVELILEQAAEIGLDAVVITDHDVIHESVRAAELAPMYGLVGIPGVE 68

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVL-LVSTAEG 108
           +       L +  +   P        +  V    G
Sbjct: 69  VSTADGHLLALGVREMPPRRAPMKETIEWVRDRGG 103


>gi|148239609|ref|YP_001224996.1| metal-dependent phosphoesterase [Synechococcus sp. WH 7803]
 gi|147848148|emb|CAK23699.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Synechococcus sp. WH 7803]
          Length = 218

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE--FSQKACAAGIQPIIG 72
            H+  S  +G+L   +++ + +++    +A+TD ++  + L      +A     QP+  
Sbjct: 27 HCHTICS--DGSLEPKDLIQQASSNGLRHLAVTDHHSSAAYLPMQAWLRAEQEQGQPVPT 84

Query: 73 CQLDID 78
              ++
Sbjct: 85 LWTGME 90


>gi|309782694|ref|ZP_07677415.1| cell division topological specificity factor MinE [Ralstonia sp.
           5_7_47FAA]
 gi|308918472|gb|EFP64148.1| cell division topological specificity factor MinE [Ralstonia sp.
           5_7_47FAA]
          Length = 580

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH+S S  +G  SL  +  +        +A+TD 
Sbjct: 347 LHVHTSAS--DGTASLEAMAAQARLLGYQYLAVTDH 380


>gi|256810071|ref|YP_003127440.1| PHP domain protein [Methanocaldococcus fervens AG86]
 gi|256793271|gb|ACV23940.1| PHP domain protein [Methanocaldococcus fervens AG86]
          Length = 218

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G L  + ++ +    +  AIAITD 
Sbjct: 6  HTHTVFS--DGELIPSELVRRAKVLRHKAIAITDH 38


>gi|124267941|ref|YP_001021945.1| hypothetical protein Mpe_A2756 [Methylibium petroleiphilum PM1]
 gi|124260716|gb|ABM95710.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 287

 Score = 48.1 bits (113), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          L  HS+ S  +G L    +  +   +     A+TD + +         A A G+  +
Sbjct: 10 LHCHSNVS--DGTLEPEALAARAQTNGVELWALTDHDEVGGQRRARDAALALGLPYL 64


>gi|15614846|ref|NP_243149.1| hypothetical protein BH2283 [Bacillus halodurans C-125]
 gi|10174903|dbj|BAB06002.1| BH2283 [Bacillus halodurans C-125]
          Length = 290

 Score = 48.1 bits (113), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L +HS+ S  +G  S   +++K        +A+TD + +    E  Q A   G   I 
Sbjct: 9  LHMHSTAS--DGGYSPTELMEKCHQANLKFVALTDHDTVNGIEEAKQTAHRLGFILIP 64


>gi|330860990|emb|CBX71263.1| protein trpH [Yersinia enterocolitica W22703]
          Length = 316

 Score = 48.1 bits (113), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 6/122 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++ S  +G+LS   ++ + A  +   +AITD +      E +       +   +  
Sbjct: 39  LHSHTTAS--DGSLSPAALVIRAAQMRVGVLAITDHDTTAGLAEAAATIKQQQLPIRLIS 96

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++I         +            +  + + +   R     SR   +       RI  
Sbjct: 97  GVEISTLWENHEIHIVGLGMDIQHPSICQLLSQQSEHR----YSRAQEISARLAKARIPD 152

Query: 134 SW 135
           +W
Sbjct: 153 AW 154


>gi|332161876|ref|YP_004298453.1| hypothetical protein YE105_C2254 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666106|gb|ADZ42750.1| hypothetical protein YE105_C2254 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 305

 Score = 48.1 bits (113), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 6/122 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++ S  +G+LS   ++ + A  +   +AITD +      E +       +   +  
Sbjct: 28  LHSHTTAS--DGSLSPAALVIRAAQMRVGVLAITDHDTTAGLAEAAATIKQQQLPIRLIS 85

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++I         +            +  + + +   R     SR   +       RI  
Sbjct: 86  GVEISTLWENHEIHIVGLGMDIQHPSICQLLSQQSEHR----YSRAQEISARLAKARIPD 141

Query: 134 SW 135
           +W
Sbjct: 142 AW 143


>gi|320450381|ref|YP_004202477.1| DNA-dependent DNA polymerase subunit beta [Thermus scotoductus
           SA-01]
 gi|320150550|gb|ADW21928.1| DNA-dependent DNA polymerase beta chain [Thermus scotoductus SA-01]
          Length = 575

 Score = 48.1 bits (113), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           LQVHS+YS  +G  SL  +     +     + +TD 
Sbjct: 341 LQVHSTYS--DGQNSLEELWQAAKSLGYEYLGVTDH 374


>gi|262198731|ref|YP_003269940.1| glycosyl transferase group 1 [Haliangium ochraceum DSM 14365]
 gi|262082078|gb|ACY18047.1| glycosyl transferase group 1 [Haliangium ochraceum DSM 14365]
          Length = 810

 Score = 48.1 bits (113), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 12/62 (19%)

Query: 12 VHLQVHSSYS------LLE------GALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
          V L VHSSYS       L          S   + +         + +TD N +  ALE +
Sbjct: 10 VDLHVHSSYSDTPQNWFLRTGGVAESYTSPQTVYETAMRRGMSLVTLTDHNTIAGALELA 69

Query: 60 QK 61
           K
Sbjct: 70 AK 71


>gi|94969416|ref|YP_591464.1| DNA polymerase X family protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551466|gb|ABF41390.1| DNA polymerase X family protein [Candidatus Koribacter versatilis
           Ellin345]
          Length = 584

 Score = 48.1 bits (113), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 76/239 (31%), Gaps = 42/239 (17%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-NLFSALEFSQKACAAGIQPIIGC 73
            +H+  +  +G  ++  +     A     IAITD + NL         A A G+      
Sbjct: 349 HMHTVET--DGRNTIEEMAQAAKARGYEYIAITDHSKNL---------AMANGL------ 391

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS-----TAEGYQRL-------IELVSRMYL 121
               D +  L+   + +     +  I +         A+G   L       +++V     
Sbjct: 392 ----DDRRALEHIKRIRRASDQLEGITIFAGIECDILADGAMDLSDEVLAQMDIVIASVH 447

Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
               ++   +    L+ I    + +L   +               A       K     R
Sbjct: 448 SHFSQERAEMTERVLKAIANPHVSLLGHPTG-----RLLLRRDAYALDMDAVMKAAAQHR 502

Query: 182 LYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           + + L  +   DR   S V +++A    +PLV   ++   S  D   + +L A      
Sbjct: 503 VAMEL--NASPDRLDLSDVHLRMARERGIPLVINTDAHHTSHFDLLKYGILQARRAWLT 559


>gi|167624540|ref|YP_001674834.1| phosphotransferase domain-containing protein [Shewanella
          halifaxensis HAW-EB4]
 gi|167354562|gb|ABZ77175.1| PHP domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 292

 Score = 48.1 bits (113), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--KACAAGIQP 69
          V L  H++ S  +G L+ + ++ +  +      AITD +      E  +  +A    +  
Sbjct: 14 VDLHSHTTAS--DGQLTPSELIARAISKGVQIFAITDHDTTDGLKEAHEFNQAHETPLAL 71

Query: 70 IIGC 73
          I G 
Sbjct: 72 INGV 75


>gi|269138887|ref|YP_003295588.1| hypothetical protein ETAE_1536 [Edwardsiella tarda EIB202]
 gi|267984548|gb|ACY84377.1| hypothetical protein ETAE_1536 [Edwardsiella tarda EIB202]
 gi|304558873|gb|ADM41537.1| hypothetical protein ETAF_1425 [Edwardsiella tarda FL6-60]
          Length = 303

 Score = 48.1 bits (113), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 1  LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L  + E  P+   L  H+  S  +G LS   ++ +        +AITD + L
Sbjct: 3  LAYFPEGRPALFDLHSHTRAS--DGLLSPEALVARAVERSVTTLAITDHDTL 52


>gi|332107762|gb|EGJ08986.1| hypothetical protein RBXJA2T_01585 [Rubrivivax benzoatilyticus
          JA2]
          Length = 285

 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  S  +G L    + ++  A      A+TD + L       + A   G+  + GC
Sbjct: 8  LHSHSDVS--DGTLDPATLAERAHARGVELWALTDHDELGGVARAREAALDLGLDFLAGC 65

Query: 74 QLDIDM 79
          ++ +  
Sbjct: 66 EISVTF 71


>gi|225026473|ref|ZP_03715665.1| hypothetical protein EUBHAL_00722 [Eubacterium hallii DSM 3353]
 gi|224956212|gb|EEG37421.1| hypothetical protein EUBHAL_00722 [Eubacterium hallii DSM 3353]
          Length = 289

 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPA----IAITDTNNLFSALEFSQKACAA 65
          +++ L +HS+ S  +G  S   I++             IA+TD + +    EF + A   
Sbjct: 3  TYIDLHIHSTAS--DGTFSPTEIINDALKLAGDKNPVVIALTDHDTVAGTEEFQKAAAKH 60


>gi|311107032|ref|YP_003979885.1| PHP domain-containing protein [Achromobacter xylosoxidans A8]
 gi|310761721|gb|ADP17170.1| PHP domain protein [Achromobacter xylosoxidans A8]
          Length = 281

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          L  HS+ S  +GAL+  ++  +  A+     A+TD + +    E ++ A    +
Sbjct: 10 LHCHSTVS--DGALAPRDVAQRAHANGVDVWALTDHDEVGGLAEAARAARDLDM 61


>gi|254166601|ref|ZP_04873455.1| conserved hypothetical protein [Aciduliprofundum boonei T469]
 gi|254167305|ref|ZP_04874157.1| conserved hypothetical protein [Aciduliprofundum boonei T469]
 gi|289596438|ref|YP_003483134.1| Protein of unknown function DUF655 [Aciduliprofundum boonei T469]
 gi|197623568|gb|EDY36131.1| conserved hypothetical protein [Aciduliprofundum boonei T469]
 gi|197624211|gb|EDY36772.1| conserved hypothetical protein [Aciduliprofundum boonei T469]
 gi|289534225|gb|ADD08572.1| Protein of unknown function DUF655 [Aciduliprofundum boonei T469]
          Length = 182

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           L  + G+G  T   I+E     PF   ED  +RV       +++ + + 
Sbjct: 118 LELLPGLGKKTMWAILEERKKGPFKDFEDLRNRVKLTHHPVKLIVNRIL 166


>gi|268611681|ref|ZP_06145408.1| hypothetical protein RflaF_19513 [Ruminococcus flavefaciens FD-1]
          Length = 281

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
            H+ +S ++    +   + +       A AITD  
Sbjct: 7  HTHTQFS-VDSEADIEKCIGRAIELGLAAYAITDHC 41


>gi|228993276|ref|ZP_04153192.1| PHP C-terminal domain protein [Bacillus pseudomycoides DSM 12442]
 gi|228766344|gb|EEM14987.1| PHP C-terminal domain protein [Bacillus pseudomycoides DSM 12442]
          Length = 572

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++          +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRGRGYKFMAITDH 373


>gi|166365472|ref|YP_001657745.1| hypothetical protein MAE_27310 [Microcystis aeruginosa NIES-843]
 gi|166087845|dbj|BAG02553.1| hypothetical protein MAE_27310 [Microcystis aeruginosa NIES-843]
          Length = 227

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
          +  P   +  +H+  S  +G +S  +++ +        +AITD ++    +E  ++A 
Sbjct: 27 DSCPYHYNFHLHTHCS--DGQMSPQDLMRQALDIGLKGLAITDHHS----IEGYRQAQ 78


>gi|119963803|ref|YP_948484.1| PHP domain-containing protein [Arthrobacter aurescens TC1]
 gi|119950662|gb|ABM09573.1| putative PHP domain protein [Arthrobacter aurescens TC1]
          Length = 281

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++    +    A+A+TD ++       +  A   GI  + G 
Sbjct: 5  LHAHSNVS--DGTETPAGVIISAVSAGLDAVALTDHDSTDGWESAAAAAREHGIAFVPGM 62

Query: 74 QLDIDMQ 80
          ++    +
Sbjct: 63 EISCRTE 69


>gi|312622983|ref|YP_004024596.1| hypothetical protein Calkro_1933 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203450|gb|ADQ46777.1| hypothetical protein Calkro_1933 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 433

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 2/80 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +H+ YS      S +  +   A    P   I D + +  + EF      AGI   IG +
Sbjct: 48  HIHTFYSF--SPYSPSKAIYMAAKSGLPTAGIMDHDTIAGSEEFISAGKIAGIATTIGVE 105

Query: 75  LDIDMQDNLKMTNQGKTPFP 94
              D    L    +   P  
Sbjct: 106 CRADFSKTLLSGKKINNPDQ 125


>gi|254388914|ref|ZP_05004145.1| PHP C-terminal domain-containing protein [Streptomyces
          clavuligerus ATCC 27064]
 gi|294814851|ref|ZP_06773494.1| PHP domain-containing protein [Streptomyces clavuligerus ATCC
          27064]
 gi|326443228|ref|ZP_08217962.1| hypothetical protein SclaA2_19283 [Streptomyces clavuligerus ATCC
          27064]
 gi|197702632|gb|EDY48444.1| PHP C-terminal domain-containing protein [Streptomyces
          clavuligerus ATCC 27064]
 gi|294327450|gb|EFG09093.1| PHP domain-containing protein [Streptomyces clavuligerus ATCC
          27064]
          Length = 287

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++   AA     +A+TD +      E    A   G+  + G 
Sbjct: 5  LHTHSTAS--DGTDTPAELVRNAAAAGLDVVALTDHDTTRGHAEAI-AALPEGLTLVTGA 61

Query: 74 QLDIDMQ 80
          +L   + 
Sbjct: 62 ELSCALD 68


>gi|16082291|ref|NP_394754.1| hypothetical protein Ta1299 [Thermoplasma acidophilum DSM 1728]
 gi|10640643|emb|CAC12421.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 182

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%)

Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
           N   +SL  + G+G  T   I+E    KPF S  D   RV S    ++++ + +     D
Sbjct: 112 NARLHSLELLPGLGNKTMWAILEERKKKPFSSFADLQERVKSIHNPQKMIVNRIIDELKD 171

Query: 893 CFGY 896
            F  
Sbjct: 172 RFEK 175


>gi|239929083|ref|ZP_04686036.1| hypothetical protein SghaA1_12736 [Streptomyces ghanaensis ATCC
          14672]
 gi|291437420|ref|ZP_06576810.1| PHP C-terminal domain-containing protein [Streptomyces ghanaensis
          ATCC 14672]
 gi|291340315|gb|EFE67271.1| PHP C-terminal domain-containing protein [Streptomyces ghanaensis
          ATCC 14672]
          Length = 285

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +  +++ K  A     IA+TD +      E    A  AG+  + G 
Sbjct: 5  LHTHSTAS--DGTDTPADLVRKAGAAGLDVIALTDHDTTRGHAEAL-AALPAGLTLVTGA 61

Query: 74 QLDIDMQ 80
          +L   + 
Sbjct: 62 ELSCRLD 68


>gi|228999326|ref|ZP_04158906.1| PHP C-terminal domain protein [Bacillus mycoides Rock3-17]
 gi|229006881|ref|ZP_04164513.1| PHP C-terminal domain protein [Bacillus mycoides Rock1-4]
 gi|228754374|gb|EEM03787.1| PHP C-terminal domain protein [Bacillus mycoides Rock1-4]
 gi|228760523|gb|EEM09489.1| PHP C-terminal domain protein [Bacillus mycoides Rock3-17]
          Length = 572

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++          +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRGRGYKFMAITDH 373


>gi|254977155|ref|ZP_05273627.1| putative phophoesterase [Clostridium difficile QCD-66c26]
 gi|255094485|ref|ZP_05323963.1| putative phophoesterase [Clostridium difficile CIP 107932]
 gi|255102741|ref|ZP_05331718.1| putative phophoesterase [Clostridium difficile QCD-63q42]
 gi|255308562|ref|ZP_05352733.1| putative phophoesterase [Clostridium difficile ATCC 43255]
 gi|255316236|ref|ZP_05357819.1| putative phophoesterase [Clostridium difficile QCD-76w55]
 gi|255518897|ref|ZP_05386573.1| putative phophoesterase [Clostridium difficile QCD-97b34]
 gi|255652076|ref|ZP_05398978.1| putative phophoesterase [Clostridium difficile QCD-37x79]
 gi|260685049|ref|YP_003216334.1| putative phophoesterase [Clostridium difficile CD196]
 gi|260688707|ref|YP_003219841.1| putative phophoesterase [Clostridium difficile R20291]
 gi|260211212|emb|CBA66710.1| putative phophoesterase [Clostridium difficile CD196]
 gi|260214724|emb|CBE07396.1| putative phophoesterase [Clostridium difficile R20291]
          Length = 278

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            L  H+  S+ +   +   I+ K A      +AIT+ + L    E        GI  I 
Sbjct: 3  TELHCHT--SISDNNFTTEEIIKKAAEKNINILAITNHDTLSGLDEALVLGEHYGITIIP 60

Query: 72 GCQLDIDMQDNLKMTN 87
          G ++      N K  +
Sbjct: 61 GIEISAYDYKNRKRVH 76


>gi|126701155|ref|YP_001090052.1| putative phophoesterase [Clostridium difficile 630]
 gi|115252592|emb|CAJ70435.1| putative polymerase/histidinol phosphatase-like [Clostridium
          difficile]
          Length = 278

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            L  H+  S+ +   +   I+ K A      +AIT+ + L    E        GI  I 
Sbjct: 3  TELHCHT--SISDNNFTTEEIIKKAAEKNINILAITNHDTLSGLDEALVLGEHYGITIIP 60

Query: 72 GCQLDIDMQDNLKMTN 87
          G ++      N K  +
Sbjct: 61 GIEISAYDYKNRKRVH 76


>gi|269792308|ref|YP_003317212.1| PHP domain-containing protein [Thermanaerovibrio acidaminovorans
          DSM 6589]
 gi|269099943|gb|ACZ18930.1| PHP domain protein [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 259

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 14 LQVHSSYSL---LE-GALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
          L VHS  S    LE G     +I  + A      +A+TD N   +A    + A   G+  
Sbjct: 10 LHVHSVLSPCGELEMGLS---DIARRAAEVGLDGLALTDHNACANAAGLIEAAQELGLWV 66

Query: 70 IIGCQLDIDMQDN 82
          I GC++  +   +
Sbjct: 67 IPGCEVQTEEDIH 79


>gi|145221713|ref|YP_001132391.1| hypothetical protein Mflv_1121 [Mycobacterium gilvum PYR-GCK]
 gi|145214199|gb|ABP43603.1| PHP C-terminal domain protein [Mycobacterium gilvum PYR-GCK]
          Length = 334

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS++S  +G+  +  ++           A+TD 
Sbjct: 100 LHVHSNWS--DGSAPIEEMMLAARDLGHEYCALTDH 133


>gi|254520784|ref|ZP_05132840.1| phosphotransferase domain-containing protein [Clostridium sp.
           7_2_43FAA]
 gi|226914533|gb|EEH99734.1| phosphotransferase domain-containing protein [Clostridium sp.
           7_2_43FAA]
          Length = 239

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 67/214 (31%), Gaps = 23/214 (10%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +HS+ S  +G L    I+      +   IA+TD N +    +        G++ I G +
Sbjct: 19  HIHSTES--DGELKPGEIVLLAKERRVDIIALTDHNTVSGNKQAVNVGQIHGVKVIPGIE 76

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
           L    + N        T          ++           L +R +   Q     ++   
Sbjct: 77  LSTRFKGNKVHILGYFTDDKYQSDEFKMILNN--------LCTRKFKACQIYFKGKLSFK 128

Query: 135 WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT---FKKLFGDRLY-VNLQRHR 190
                   G I  + G         +     +A   LL    F+++       +  + +R
Sbjct: 129 -----SEGGKIATSAGID---FLHHYNVKVVLAHPTLLDRGVFEQIINLNFDGIEAKYYR 180

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
             D   E   + +A    +   A ++   L + D
Sbjct: 181 NKDNETE-YFINVAKKKNIIYTAGSDFHSLKKVD 213


>gi|187926586|ref|YP_001892931.1| PHP domain protein [Ralstonia pickettii 12J]
 gi|241666097|ref|YP_002984456.1| PHP domain protein [Ralstonia pickettii 12D]
 gi|187728340|gb|ACD29504.1| PHP domain protein [Ralstonia pickettii 12J]
 gi|240868124|gb|ACS65784.1| PHP domain protein [Ralstonia pickettii 12D]
          Length = 582

 Score = 47.7 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH+S S  +G  SL  +  +        +A+TD 
Sbjct: 349 LHVHTSAS--DGTASLEAMAAQARMLGYQYLAVTDH 382


>gi|88859928|ref|ZP_01134567.1| hypothetical protein PTD2_17990 [Pseudoalteromonas tunicata D2]
 gi|88817922|gb|EAR27738.1| hypothetical protein PTD2_17990 [Pseudoalteromonas tunicata D2]
          Length = 282

 Score = 47.7 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L  H+ +S  +G+L+   ++D+    +   +AITD + +
Sbjct: 5  LHSHTLFS--DGSLTPEQLIDRAIEKKVDVLAITDHDTI 41


>gi|315446551|ref|YP_004079430.1| PHP family phosphohydrolase, histidinol phosphatase [Mycobacterium
           sp. Spyr1]
 gi|315264854|gb|ADU01596.1| PHP family phosphohydrolase, histidinol phosphatase [Mycobacterium
           sp. Spyr1]
          Length = 334

 Score = 47.7 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS++S  +G+  +  ++           A+TD 
Sbjct: 100 LHVHSNWS--DGSAPIEEMMLAARDLGHEYCALTDH 133


>gi|291278778|ref|YP_003495613.1| DNA uptake protein [Deferribacter desulfuricans SSM1]
 gi|290753480|dbj|BAI79857.1| DNA uptake protein [Deferribacter desulfuricans SSM1]
          Length = 84

 Score = 47.7 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L ++KG+G   A  I+E    KPFDS+E+       K + +R LE  
Sbjct: 31  LMSLKGLGEKKAEAIIERREKKPFDSIEELLE---IKGIGKRFLEKN 74


>gi|311031395|ref|ZP_07709485.1| hypothetical protein Bm3-1_12746 [Bacillus sp. m3-13]
          Length = 573

 Score = 47.7 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 82/253 (32%), Gaps = 30/253 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN----NLFSALEFSQKACAAGIQP 69
           L +HS+YS  +GA ++  +++   A     +AITD +              +     I+ 
Sbjct: 340 LHMHSTYS--DGAHTMEEMIEANRAKGYKYMAITDHSQYLKVANGLTPERLRQQKEEIKK 397

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           +     DI +   ++M             ++            +++V    +     Q  
Sbjct: 398 LNEKYDDITILSGVEMDILPDGSLDYDDELL----------EEMDIV-IASIHSSFSQKR 446

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            + +  L++      + +    +G +          V  + L+   K     L +N   +
Sbjct: 447 EVIMDRLRKALENNHVDIIAHPTGRL--IGRREGYDVDVEMLIQLAKETDTALELNANPN 504

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
           R       S  V+LA    + LV   ++  +        D+L  +      ++K   +  
Sbjct: 505 RLD---LASHYVRLAQDAGVKLVINTDAHSI--------DMLEHMEVGVAAARKGWIKKD 553

Query: 250 PDHYLKNRSEMVS 262
                 +  E+  
Sbjct: 554 NVINTWSLDELKK 566


>gi|261340038|ref|ZP_05967896.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Enterobacter cancerogenus ATCC 35316]
 gi|288317958|gb|EFC56896.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Enterobacter cancerogenus ATCC 35316]
          Length = 293

 Score = 47.7 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  H+  S  +G L+   ++ + A  +   +AITD + 
Sbjct: 12 LHSHTQAS--DGLLTPEALVHRAAEMRVGTLAITDHDT 47


>gi|218780255|ref|YP_002431573.1| response regulator receiver protein [Desulfatibacillum
          alkenivorans AK-01]
 gi|218761639|gb|ACL04105.1| Protein with response regulator receiver domain
          [Desulfatibacillum alkenivorans AK-01]
          Length = 352

 Score = 47.7 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  H+ +S  +G L    +  +       A+A+TD  
Sbjct: 4  LHTHTIFS--DGVLIPAELARRAQVAGLTAMAMTDHG 38


>gi|118479702|ref|YP_896853.1| hypothetical protein BALH_4136 [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044868|ref|ZP_03112102.1| PHP domain protein [Bacillus cereus 03BB108]
 gi|225866526|ref|YP_002751904.1| PHP domain protein [Bacillus cereus 03BB102]
 gi|229186806|ref|ZP_04313961.1| PHP C-terminal domain protein [Bacillus cereus BGSC 6E1]
 gi|118418927|gb|ABK87346.1| DNA polymerase X family [Bacillus thuringiensis str. Al Hakam]
 gi|196024356|gb|EDX63029.1| PHP domain protein [Bacillus cereus 03BB108]
 gi|225787972|gb|ACO28189.1| PHP domain protein [Bacillus cereus 03BB102]
 gi|228596543|gb|EEK54208.1| PHP C-terminal domain protein [Bacillus cereus BGSC 6E1]
          Length = 573

 Score = 47.7 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++          +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRTRGYKFMAITDH 374


>gi|330815904|ref|YP_004359609.1| hypothetical protein bgla_1g09710 [Burkholderia gladioli BSR3]
 gi|327368297|gb|AEA59653.1| hypothetical protein bgla_1g09710 [Burkholderia gladioli BSR3]
          Length = 111

 Score = 47.7 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
           +L  IKG+G   AR I+E   A  P+    D   RV    +  + +E LV  G 
Sbjct: 31  ALRGIKGIGPAKARAIVEEREAHGPYKDTADLARRV--SGIGEKSVERLVAEGL 82


>gi|227111428|ref|ZP_03825084.1| putative phosphoesterase [Pectobacterium carotovorum subsp.
          brasiliensis PBR1692]
          Length = 294

 Score = 47.7 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 2  TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          +Q +   P +  L  H++ S  +G L+   ++ +    +   +AITD +      E    
Sbjct: 5  SQPISSFPLY-DLHSHTTAS--DGLLTPTALVSRAVDMRVSVLAITDHDTTAGLDEAQDA 61

Query: 62 ACAAGIQ 68
               + 
Sbjct: 62 IAQQDLP 68


>gi|187478046|ref|YP_786070.1| phosphoesterase [Bordetella avium 197N]
 gi|115422632|emb|CAJ49157.1| putative phosphoesterase [Bordetella avium 197N]
          Length = 281

 Score = 47.7 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L   ++  +  A+     A+TD + +    +    A   G++ I G 
Sbjct: 10 LHCHSTMS--DGMLPPADVARRAHANGVDVWALTDHDEVSGVAQARAAAAELGMRFITGA 67


>gi|121605696|ref|YP_983025.1| hypothetical protein Pnap_2802 [Polaromonas naphthalenivorans CJ2]
 gi|120594665|gb|ABM38104.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
          Length = 119

 Score = 47.7 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN---RRVLESLVFAGA 890
           L  IKGVG  T++ I+       F S +DF +RV         +   E +  AGA
Sbjct: 31  LDGIKGVGPATSQRIVAERKKSEFKSWDDFIARVKGVGEKNAAKFSAEGMTVAGA 85


>gi|291545075|emb|CBL18184.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Ruminococcus sp. 18P13]
          Length = 279

 Score = 47.7 bits (112), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+  S  +G+L + +I+ +        ++ITD + L S    +      G++ I G 
Sbjct: 5  LHCHTKLS--DGSLGIEDIIMQAKRTGIDFLSITDHDTLSSFSRANILGERYGVRIIQGV 62


>gi|284162549|ref|YP_003401172.1| PHP domain protein [Archaeoglobus profundus DSM 5631]
 gi|284012546|gb|ADB58499.1| PHP domain protein [Archaeoglobus profundus DSM 5631]
          Length = 215

 Score = 47.7 bits (112), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          V L +HS YS  +G  +++ I  +        IAI D 
Sbjct: 3  VDLHIHSIYS--DGVATIDQIARRAKERGLKVIAIVDH 38


>gi|126179709|ref|YP_001047674.1| phosphotransferase domain-containing protein [Methanoculleus
           marisnigri JR1]
 gi|125862503|gb|ABN57692.1| PHP C-terminal domain protein [Methanoculleus marisnigri JR1]
          Length = 576

 Score = 47.7 bits (112), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH+ +S  EGA S+  +           +AI D 
Sbjct: 346 LHVHTRWS--EGAHSIEEMAKAARTLGYEYVAICDH 379


>gi|284989047|ref|YP_003407601.1| PHP domain-containing protein [Geodermatophilus obscurus DSM 43160]
 gi|284062292|gb|ADB73230.1| PHP domain protein [Geodermatophilus obscurus DSM 43160]
          Length = 357

 Score = 47.7 bits (112), Expect = 0.012,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS +S  +G   +  + +         +A+TD 
Sbjct: 109 LHVHSDWS--DGGSPIREMAEAAIGLGHEYMALTDH 142


>gi|186476190|ref|YP_001857660.1| phosphotransferase domain-containing protein [Burkholderia
          phymatum STM815]
 gi|184192649|gb|ACC70614.1| PHP domain protein [Burkholderia phymatum STM815]
          Length = 277

 Score = 47.7 bits (112), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GA +   +  +  A      A+TD + +   +E  + A A G+Q + G 
Sbjct: 6  LHCHSTVS--DGAFAPAEVARRAHAGGVTLWALTDHDEIGGQVEAREAAEALGMQYLSGV 63

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 64 EISVTWASR 72


>gi|238798393|ref|ZP_04641875.1| hypothetical protein ymoll0001_19720 [Yersinia mollaretii ATCC
          43969]
 gi|238717778|gb|EEQ09612.1| hypothetical protein ymoll0001_19720 [Yersinia mollaretii ATCC
          43969]
          Length = 309

 Score = 47.7 bits (112), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          L  H++ S  +G+LS + ++ + A  +   +AITD +      E +       +
Sbjct: 22 LHSHTTAS--DGSLSPSALVIRAAQMRVGVLAITDHDTTAGLAEAAATIAQEKL 73


>gi|213416670|ref|ZP_03349814.1| hypothetical protein Salmonentericaenterica_01292 [Salmonella
          enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 92

 Score = 47.7 bits (112), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G+
Sbjct: 5  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGL 56


>gi|328884854|emb|CCA58093.1| Predicted metal-dependent phosphoesterases [Streptomyces venezuelae
           ATCC 10712]
          Length = 304

 Score = 47.7 bits (112), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 17/104 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK------------ 61
           L  HS+ S  +G  S   ++   AA     +A+TD +      E  +             
Sbjct: 21  LHTHSTAS--DGTDSPAELVRNAAAAGLDVVALTDHDTTRGHAEAIEALPEGLTLVTGAE 78

Query: 62  --ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
                 GI  +       D ++   +  +       VP    +V
Sbjct: 79  LSCRVDGI-GLHMLAYLFDPEEPALLAERELVRDDRVPRARAMV 121


>gi|304404128|ref|ZP_07385790.1| PHP domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304347106|gb|EFM12938.1| PHP domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 288

 Score = 47.7 bits (112), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 76/258 (29%), Gaps = 31/258 (12%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+  S  +G  +   ++         A+AITD + +    E   +    GI+ I G +
Sbjct: 10  HTHTLAS--DGTNAPAVVVRLAKEAGLAAVAITDHDTISGWAEAMAEGERIGIEVIPGVE 67

Query: 75  --LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
               ++ +D   +     +        +       G + L+ ++ R+  L          
Sbjct: 68  LSTVMNGRDIHILGYWCNSDDEQWQERLRSQQGFRGKRNLM-MIERLQALG--------- 117

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-----FKKLFGDRL-YVNL 186
                ++  + +I L       ++ A       +AE  +        ++ F   L    L
Sbjct: 118 ----IDVTIDEIIALARKHGKQVEGAEQIGRPHLAEVLIARGVVTDIREAFDRYLGESGL 173

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                        +  +     + ++A          D E  + +  V H     +    
Sbjct: 174 AYCNPPRLQPFEAIDWIREAGGVSVIA----HPGLYGDDELVEAI--VRHGAQGIEAYHS 227

Query: 247 RVTPDHYLKNRSEMVSIF 264
               D  L+    M   +
Sbjct: 228 DHDADQELR-YEAMAQRY 244


>gi|289433342|ref|YP_003463215.1| PHP domain protein [Dehalococcoides sp. GT]
 gi|288947062|gb|ADC74759.1| PHP domain protein [Dehalococcoides sp. GT]
          Length = 287

 Score = 47.7 bits (112), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
          V L +H++ S  +G  S  NI+ K A      IAI D +NL       Q A   
Sbjct: 5  VDLHIHTTVS--DGVHSPLNIIAKAAKVHMEYIAICDHDNLGGIGLAIQTARKY 56


>gi|254672045|emb|CBA04627.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha275]
          Length = 187

 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 5/33 (15%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
              V + +    ++G  I +V+  + + + E   
Sbjct: 26   GFVTAVRTMMGKRGK-IAFVSLEDLSGQVEIMV 57


>gi|73749384|ref|YP_308623.1| phosphotransferase domain-containing protein [Dehalococcoides sp.
          CBDB1]
 gi|73661100|emb|CAI83707.1| PHP domain N-terminal region family protein [Dehalococcoides sp.
          CBDB1]
          Length = 287

 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
          V L +H++ S  +G  S  NI+ K A      IAI D +NL       Q A   
Sbjct: 5  VDLHIHTTVS--DGVHSPLNIIAKAAKVHMEYIAICDHDNLGGIGLAIQTARKY 56


>gi|271500651|ref|YP_003333676.1| PHP domain-containing protein [Dickeya dadantii Ech586]
 gi|270344206|gb|ACZ76971.1| PHP domain protein [Dickeya dadantii Ech586]
          Length = 290

 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 1  LTQYLEKSPSF--VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          +   L  SP+F    L  H++ S  +G L+   ++ +  + +   +AITD + 
Sbjct: 1  MPDELPASPAFPLYDLHSHTTAS--DGLLTPAELVQRAVSMRVSVLAITDHDT 51


>gi|312795462|ref|YP_004028384.1| COME operon protein 1 [Burkholderia rhizoxinica HKI 454]
 gi|312167237|emb|CBW74240.1| COME operon protein 1 [Burkholderia rhizoxinica HKI 454]
          Length = 123

 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           L AI G+G +TA+ I+EA  A  PF S +D   RV      
Sbjct: 54  LQAIHGIGPSTAQAIIEARDAQGPFSSADDLVRRVKRVGAK 94


>gi|222478877|ref|YP_002565114.1| PHP domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222451779|gb|ACM56044.1| PHP domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 605

 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H+ +S  +G  S+  +++  A     A A+TD 
Sbjct: 352 LHTHTDWS--DGGFSIAEMIEAAAERGYDAHAVTDH 385


>gi|307354311|ref|YP_003895362.1| PHP domain-containing protein [Methanoplanus petrolearius DSM
           11571]
 gi|307157544|gb|ADN36924.1| PHP domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 215

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 85/249 (34%), Gaps = 49/249 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNLFSALEFSQ----KACAAG 66
           L  H+ +S  +G L    ++ + A      I ITD    +N+   ++ ++     A   G
Sbjct: 4   LHTHTIHS--DGELLPTELIRRAAVLGYDIIGITDHADRSNISQIIKMTESIRSSAEEYG 61

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I+ + G ++                P   +P +  L         ++   + +  + +G 
Sbjct: 62  IRLVTGVEITH-------------VPPREIPELARLAKEEGAEIVIVHGETVVEPVMKGT 108

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            S      ++  +   GLI                  +++A+             +++ +
Sbjct: 109 NSAACSCEYVDILAHPGLI--------------SEQDAELAKA----------SGVFLEI 144

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
               G++R     V ++A      +V  ++       D    +   AVA    +++    
Sbjct: 145 TSRGGHNR-TNGHVYRIAERTGCRMVVDSD--THDPGDLMTEEARKAVALGAGMNRDTAD 201

Query: 247 RVTPDHYLK 255
           ++  D+ ++
Sbjct: 202 KILSDYEVR 210


>gi|169835977|ref|ZP_02869165.1| DNA polymerase III, alpha chain [candidate division TM7 single-cell
           isolate TM7a]
          Length = 52

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 32/44 (72%)

Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
           ++  LK T G+++YQEQ MQI++   G++  +AD LR+A+GK+ 
Sbjct: 3   MENSLKNTYGILVYQEQFMQISKEWCGFTGGQADTLRKAVGKRN 46


>gi|146295903|ref|YP_001179674.1| hypothetical protein Csac_0867 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409479|gb|ABP66483.1| hypothetical protein Csac_0867 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 436

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 2/81 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +H+ YS      S +  +    A   P   I D + +  A+EF +    A I   IG +
Sbjct: 51  HIHTFYSF--SPYSPSKAIWMAKASSLPTAGIMDHDTVAGAIEFIEAGKIAQIATTIGVE 108

Query: 75  LDIDMQDNLKMTNQGKTPFPT 95
              D         +   P   
Sbjct: 109 CRADFSKTPLNGKKINNPDQD 129


>gi|317128868|ref|YP_004095150.1| PHP domain protein [Bacillus cellulosilyticus DSM 2522]
 gi|315473816|gb|ADU30419.1| PHP domain protein [Bacillus cellulosilyticus DSM 2522]
          Length = 291

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +G  S + +++K   +    +++TD +     +E  + A    ++ I G 
Sbjct: 13 LHMHSTAS--DGGYSPSQLMEKCINNHLSIVSLTDHDTTAGVIEAMKVAKEHHLRFIPG- 69

Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPS 98
             I++   +K T+     +   P 
Sbjct: 70 ---IELSTRIKNTHVDILGYGIDPH 91


>gi|297617886|ref|YP_003703045.1| PHP domain protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145723|gb|ADI02480.1| PHP domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 558

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+ +S  +GA SL  ++   A      +A+T+ 
Sbjct: 327 LHIHTDWS--DGAHSLREMVAAAAKLGYSYMAVTEH 360


>gi|118470220|ref|YP_890658.1| hypothetical protein MSMEG_6445 [Mycobacterium smegmatis str. MC2
           155]
 gi|118171507|gb|ABK72403.1| PHP domain protein [Mycobacterium smegmatis str. MC2 155]
          Length = 334

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS++S  +G+  +  ++           A+TD 
Sbjct: 100 LHVHSNWS--DGSAPIEEMMMAARDLGHEYCALTDH 133


>gi|78779304|ref|YP_397416.1| phosphoesterase PHP-like [Prochlorococcus marinus str. MIT 9312]
 gi|78712803|gb|ABB49980.1| Phosphoesterase PHP-like protein [Prochlorococcus marinus str.
          MIT 9312]
          Length = 215

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             P  ++   H+ +S  +G+L    +L++   +    ++ITD +     ++  +     
Sbjct: 16 NSCPKNINFHCHTKFS--DGSLEPYELLEQAYKNNLKFLSITDHHT----IKAHEYIKKN 69

Query: 66 GI 67
           +
Sbjct: 70 NL 71


>gi|87302681|ref|ZP_01085492.1| hypothetical protein WH5701_13050 [Synechococcus sp. WH 5701]
 gi|87282564|gb|EAQ74522.1| hypothetical protein WH5701_13050 [Synechococcus sp. WH 5701]
          Length = 217

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            H++ S  +G+L    + D+        +A+TD ++  + +   ++
Sbjct: 26 HCHTTCS--DGSLQPEWLADQAVDRGLEHLAVTDHHSTAALVPLQRR 70


>gi|238786120|ref|ZP_04630075.1| hypothetical protein yberc0001_36550 [Yersinia bercovieri ATCC
          43970]
 gi|238712972|gb|EEQ05029.1| hypothetical protein yberc0001_36550 [Yersinia bercovieri ATCC
          43970]
          Length = 309

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          L  H++ S  +G+L+   ++ + A  +   +AITD +      E +       +
Sbjct: 22 LHSHTTAS--DGSLTPAALVIRAAQMRVSVLAITDHDTTAGLAEAAATIAQEKL 73


>gi|67920422|ref|ZP_00513942.1| Phosphoesterase PHP, N-terminal [Crocosphaera watsonii WH 8501]
 gi|67857906|gb|EAM53145.1| Phosphoesterase PHP, N-terminal [Crocosphaera watsonii WH 8501]
          Length = 230

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           +H+  S  +G L+   ++++        +AITD +++  
Sbjct: 36 HMHTKCS--DGQLTPEQLIEQATNIGLKGLAITDHHSVEG 73


>gi|21223530|ref|NP_629309.1| hypothetical protein SCO5161 [Streptomyces coelicolor A3(2)]
 gi|256785363|ref|ZP_05523794.1| hypothetical protein SlivT_12811 [Streptomyces lividans TK24]
 gi|289769259|ref|ZP_06528637.1| PHP domain-containing protein [Streptomyces lividans TK24]
 gi|9714446|emb|CAC01362.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
 gi|289699458|gb|EFD66887.1| PHP domain-containing protein [Streptomyces lividans TK24]
          Length = 285

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++ K AA     +A+TD +      E    A   G+  + G 
Sbjct: 5  LHTHSTAS--DGTDTPAQLVRKAAATGLDVVALTDHDTTRGHAEA-VAALPEGLTLVTGA 61

Query: 74 QLDIDMQ 80
          +L   + 
Sbjct: 62 ELSCRLD 68


>gi|260773019|ref|ZP_05881935.1| hypothetical protein VIB_001481 [Vibrio metschnikovii CIP 69.14]
 gi|260612158|gb|EEX37361.1| hypothetical protein VIB_001481 [Vibrio metschnikovii CIP 69.14]
          Length = 290

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          L  H++ S  +G  S   ++D+        +AITD + +       +    AG  PI
Sbjct: 5  LHSHTTAS--DGRFSPEQLIDRALEFNVDVLAITDHDTIDGLAPA-RAYIEAGQHPI 58


>gi|296109208|ref|YP_003616157.1| PHP domain protein [Methanocaldococcus infernus ME]
 gi|295434022|gb|ADG13193.1| PHP domain protein [Methanocaldococcus infernus ME]
          Length = 219

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           +H+ YS  +G L  + +  +        IAITD  +  +  E  +KA
Sbjct: 6  HMHTVYS--DGELIPSELARRAKVLGHKVIAITDHGDFSNYKELIEKA 51


>gi|307729567|ref|YP_003906791.1| putative DNA uptake protein, ComEA-like protein [Burkholderia sp.
           CCGE1003]
 gi|307584102|gb|ADN57500.1| putative DNA uptake protein, ComEA-like protein [Burkholderia sp.
           CCGE1003]
          Length = 227

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   A+ I+E    + PF S +D  +RV      
Sbjct: 33  ALESVKGIGPAHAKAIIEERTKNGPFRSADDLAARVKGIGNK 74


>gi|269926497|ref|YP_003323120.1| putative transcriptional regulator [Thermobaculum terrenum ATCC
          BAA-798]
 gi|269790157|gb|ACZ42298.1| putative transcriptional regulator [Thermobaculum terrenum ATCC
          BAA-798]
          Length = 586

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 12 VHLQVHSSYS---LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          V L +H+  S    L+  +   +IL K A  Q  AIAITD N +    EF ++
Sbjct: 15 VDLHIHTPASSLCYLDKNVRFIDILRKTAEKQLDAIAITDHNTVVGIAEFRRR 67


>gi|313674911|ref|YP_004052907.1| php domain protein [Marivirga tractuosa DSM 4126]
 gi|312941609|gb|ADR20799.1| PHP domain protein [Marivirga tractuosa DSM 4126]
          Length = 570

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS+YS  +G  SL  +           + I+D 
Sbjct: 331 LHNHSTYS--DGKNSLEEMAQYCKDLGYEYLGISDH 364


>gi|312128177|ref|YP_003993051.1| hypothetical protein Calhy_1972 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778196|gb|ADQ07682.1| conserved hypothetical protein [Caldicellulosiruptor hydrothermalis
           108]
          Length = 433

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 2/80 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +H+ YS      S +  +   A    P   I D + +  + EF      AGI   IG +
Sbjct: 48  HIHTFYSF--SPYSPSKAIYMAAKSGLPTAGIMDHDTIAGSEEFISAGKIAGIATTIGVE 105

Query: 75  LDIDMQDNLKMTNQGKTPFP 94
              D    L    +   P  
Sbjct: 106 CRADFSKTLLSGKKINNPDQ 125


>gi|187934032|ref|YP_001887030.1| metal-dependent phosphoesterase [Clostridium botulinum B str.
          Eklund 17B]
 gi|187722185|gb|ACD23406.1| PHP domain protein [Clostridium botulinum B str. Eklund 17B]
          Length = 277

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
           VH+S S  +G LS   ++++   +    +AITD + L   
Sbjct: 7  HVHTSCS--DGLLSPIEVVNRAKQNSVSYLAITDHDTLSGL 45


>gi|213612806|ref|ZP_03370632.1| hypothetical protein SentesTyp_09994 [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-2068]
          Length = 108

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G+
Sbjct: 5  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGL 56


>gi|261402393|ref|YP_003246617.1| PHP domain protein [Methanocaldococcus vulcanius M7]
 gi|261369386|gb|ACX72135.1| PHP domain protein [Methanocaldococcus vulcanius M7]
          Length = 223

 Score = 47.3 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G L    ++ +    +  AIAITD 
Sbjct: 12 HTHTIFS--DGELLPAELVRRAKVLKHRAIAITDH 44


>gi|150403178|ref|YP_001330472.1| phosphotransferase domain-containing protein [Methanococcus
          maripaludis C7]
 gi|150034208|gb|ABR66321.1| PHP domain protein [Methanococcus maripaludis C7]
          Length = 299

 Score = 47.3 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 15 QVHSSYS---------LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           +H+ YS           +       +L    A+    IA+TD N +  ALE  +     
Sbjct: 11 HIHTKYSGMMKYMGLKFPDSVEEPLKVLKCAKANNMDIIAVTDHNTIKGALETKKYEKEF 70

Query: 66 GIQPIIGCQLDIDMQD 81
          GI+ ++G ++     +
Sbjct: 71 GIEVVVGSEIMSKDGE 86


>gi|111020584|ref|YP_703556.1| hypothetical protein RHA1_ro03595 [Rhodococcus jostii RHA1]
 gi|110820114|gb|ABG95398.1| possible DNA polymerase [Rhodococcus jostii RHA1]
          Length = 338

 Score = 47.3 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G   ++ ++   AA      A+TD 
Sbjct: 105 LHTHSDWS--DGGSPIDEMMRSAAALGHEYCALTDH 138


>gi|94264293|ref|ZP_01288086.1| PHP-like [delta proteobacterium MLMS-1]
 gi|93455259|gb|EAT05469.1| PHP-like [delta proteobacterium MLMS-1]
          Length = 218

 Score = 47.3 bits (111), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS +S  +GAL     L ++      A+AITD 
Sbjct: 4  LHTHSLFS--DGALVPAEHLRRVEILGYQAVAITDH 37


>gi|317406343|gb|EFV86574.1| phosphoesterase [Achromobacter xylosoxidans C54]
          Length = 277

 Score = 47.3 bits (111), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  HS+ S  +GAL+  ++  +  A+     A+TD + +    E +  A   G++
Sbjct: 6  LHCHSTVS--DGALAPRDVAQRAHANGVDVWALTDHDEVGGLAEAAAMAGELGMR 58


>gi|312880669|ref|ZP_07740469.1| PHP domain protein [Aminomonas paucivorans DSM 12260]
 gi|310783960|gb|EFQ24358.1| PHP domain protein [Aminomonas paucivorans DSM 12260]
          Length = 276

 Score = 47.3 bits (111), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L +HS  S  +G LS  ++ +     +   +A+TD +      EF +    A +Q
Sbjct: 6  LHIHSRCS--DGTLSPASLAELARRRRVSVVALTDHDTTSGQEEFRRACARAEVQ 58


>gi|222528703|ref|YP_002572585.1| hypothetical protein Athe_0697 [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455550|gb|ACM59812.1| conserved hypothetical protein [Caldicellulosiruptor bescii DSM
           6725]
          Length = 433

 Score = 47.3 bits (111), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 2/80 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +H+ YS      S +  +   A    P   I D + +  + EF      AGI   IG +
Sbjct: 48  HIHTFYSF--SPYSPSKAIYMAAKSGLPTAGIMDHDTIAGSNEFIVAGKLAGIATTIGVE 105

Query: 75  LDIDMQDNLKMTNQGKTPFP 94
              D    L    +   P  
Sbjct: 106 CRADFSKTLLSGKKINNPDQ 125


>gi|317064822|ref|ZP_07929307.1| phosphotransferase domain-containing protein [Fusobacterium
          ulcerans ATCC 49185]
 gi|313690498|gb|EFS27333.1| phosphotransferase domain-containing protein [Fusobacterium
          ulcerans ATCC 49185]
          Length = 292

 Score = 47.3 bits (111), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 17 HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
          HS YS  +G  S   I+     ++   +A+TD N++    E ++    AGI+ I G ++D
Sbjct: 2  HSLYSD-DGEFSPEEIIAIGKKEEMEIMALTDHNSVKGVDEMTEYGKKAGIKVISGVEID 60

Query: 77 I 77
           
Sbjct: 61 C 61


>gi|254294841|ref|YP_003060864.1| PHP domain protein [Hirschia baltica ATCC 49814]
 gi|254043372|gb|ACT60167.1| PHP domain protein [Hirschia baltica ATCC 49814]
          Length = 379

 Score = 47.3 bits (111), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+ +S  +GA+  +  +++   D   A+AIT+ 
Sbjct: 43 LHTHTVFS--DGAVWPSIRVEEAHRDGLDALAITEH 76


>gi|302553967|ref|ZP_07306309.1| PHP domain-containing protein [Streptomyces viridochromogenes DSM
          40736]
 gi|302471585|gb|EFL34678.1| PHP domain-containing protein [Streptomyces viridochromogenes DSM
          40736]
          Length = 286

 Score = 47.3 bits (111), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++ K AA     +A+TD +      E    A   G+  + G 
Sbjct: 5  LHTHSTAS--DGTDAPAELVRKAAATGLDVVALTDHDTTRGHAEAI-AALPEGLTLVTGA 61

Query: 74 QLDIDMQ 80
          +L   + 
Sbjct: 62 ELSCRLD 68


>gi|326334206|ref|ZP_08200429.1| PHP domain protein [Nocardioidaceae bacterium Broad-1]
 gi|325947997|gb|EGD40114.1| PHP domain protein [Nocardioidaceae bacterium Broad-1]
          Length = 291

 Score = 47.3 bits (111), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  HS  S  +G  S   ++    A     +AITD + 
Sbjct: 5  LHTHSRVS--DGTDSPTELIQAAKAAGLDVVAITDHDT 40


>gi|218281349|ref|ZP_03487827.1| hypothetical protein EUBIFOR_00392 [Eubacterium biforme DSM 3989]
 gi|218217441|gb|EEC90979.1| hypothetical protein EUBIFOR_00392 [Eubacterium biforme DSM 3989]
          Length = 546

 Score = 47.3 bits (111), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L + S+YS  +G   +  +  +   +    I+ITD N
Sbjct: 258 LHIRSNYSD-DGYYDVEELFKQAKDNGLEVISITDHN 293


>gi|212638406|ref|YP_002314926.1| hypothetical protein Aflv_0560 [Anoxybacillus flavithermus WK1]
 gi|212559886|gb|ACJ32941.1| DNA polymerase IV fused to PHP family metal-dependent
           phosphoesterase [Anoxybacillus flavithermus WK1]
          Length = 569

 Score = 47.3 bits (111), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  + +         IAITD 
Sbjct: 339 LHMHTTWS--DGAFSIEQMAEACRKKGYRYIAITDH 372


>gi|194288920|ref|YP_002004827.1| hypothetical protein RALTA_A0786 [Cupriavidus taiwanensis LMG
           19424]
 gi|193222755|emb|CAQ68758.1| conserved hypothetical protein; nucleic acid binding
           Helix-hairpin-helix motif [Cupriavidus taiwanensis LMG
           19424]
          Length = 135

 Score = 47.3 bits (111), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L +IKGVG  TARHI+E      PF    D   RV      
Sbjct: 43  ALTSIKGVGAATARHIVEERNKRGPFKDAADLAERVSGIGPK 84


>gi|75907184|ref|YP_321480.1| PHP-like protein [Anabaena variabilis ATCC 29413]
 gi|75700909|gb|ABA20585.1| PHP-like protein [Anabaena variabilis ATCC 29413]
          Length = 228

 Score = 46.9 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          +  P   +  +H+ YS  +G L  + ++++  A      AITD + +       + A A
Sbjct: 25 QSCPKLFNFHMHTVYS--DGRLQPSVLMEQAIAIGLQGFAITDHHTVGG----YEAAQA 77


>gi|17230432|ref|NP_486980.1| hypothetical protein alr2940 [Nostoc sp. PCC 7120]
 gi|17132034|dbj|BAB74639.1| alr2940 [Nostoc sp. PCC 7120]
          Length = 228

 Score = 46.9 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          +  P   +  +H+ YS  +G L  + ++++  A      AITD + +       + A A
Sbjct: 25 QSCPKLFNFHMHTVYS--DGRLQPSVLMEQAIAIGLQGFAITDHHTVGG----YEAAQA 77


>gi|188586105|ref|YP_001917650.1| PHP domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350792|gb|ACB85062.1| PHP domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 276

 Score = 46.9 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS--QKACAAGIQPII 71
          L +H++ S  +G L  + I+D+    Q   IAI D +      +    ++   + I  I 
Sbjct: 7  LHIHTTAS--DGVLHPHEIIDRAEEKQIDYIAIADHDTFLGVEKLLVDKRLKRSKITLIP 64

Query: 72 GCQLDIDMQDN 82
            ++  D+ D 
Sbjct: 65 AIEISTDLADE 75


>gi|294101677|ref|YP_003553535.1| PHP domain protein [Aminobacterium colombiense DSM 12261]
 gi|293616657|gb|ADE56811.1| PHP domain protein [Aminobacterium colombiense DSM 12261]
          Length = 264

 Score = 46.9 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 10/107 (9%)

Query: 9   PSFVHLQVHSSYSL---LE-GALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           P +V L +H+  S    LE GA   ++I+ K   +    IAITD N+   AL       A
Sbjct: 16  PYYVDLHIHTVLSPCGELEMGA---HDIVSKARQEGIQIIAITDHNS---ALNVPAITKA 69

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
           AG  P++   L++   +++ +    +           L     G + 
Sbjct: 70  AGGSPVVIPGLEVQTAEDIHIVTLFRDCQVASDYQRWLWERMPGLRN 116


>gi|327399483|ref|YP_004340352.1| PHP domain-containing protein [Hippea maritima DSM 10411]
 gi|327182112|gb|AEA34293.1| PHP domain protein [Hippea maritima DSM 10411]
          Length = 224

 Score = 46.9 bits (110), Expect = 0.017,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+ +S  +G L  + +  +       AIA TD 
Sbjct: 4  LHTHTLFS--DGELIPSELARRAKDIGYRAIAFTDH 37


>gi|304316214|ref|YP_003851359.1| PHP domain protein [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302777716|gb|ADL68275.1| PHP domain protein [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 572

 Score = 46.9 bits (110), Expect = 0.017,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH+ YS  +GA +L+ +++         I ITD 
Sbjct: 342 HVHTIYS--DGANTLSEMVNAARDRGYKIIGITDH 374


>gi|85059381|ref|YP_455083.1| hypothetical protein SG1403 [Sodalis glossinidius str.
          'morsitans']
 gi|84779901|dbj|BAE74678.1| conserved hypothetical protein [Sodalis glossinidius str.
          'morsitans']
          Length = 297

 Score = 46.9 bits (110), Expect = 0.017,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L  H++ S  +G L    ++ +        +AITD + +  
Sbjct: 16 LHSHTTSS--DGLLKPRELVVRAHGMGVDVLAITDHDTVEG 54


>gi|318605610|emb|CBY27108.1| putative metal-dependent phosphoesterases (PHP family) [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 316

 Score = 46.9 bits (110), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 6/122 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++ S  +G+LS   ++ + A  +   +AITD +      E         +   +  
Sbjct: 39  LHSHTTAS--DGSLSPAALVIRAAQMRVGVLAITDHDTTAGLAEAVATIKQQQLPIRLIS 96

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++I         +            +  + + +   R     SR   +       RI  
Sbjct: 97  GVEISTLWENHEIHIVGLGMDIQHPSICQLLSQQSEHR----YSRAQEISARLAKARIPD 152

Query: 134 SW 135
           +W
Sbjct: 153 AW 154


>gi|282858119|ref|ZP_06267314.1| PHP domain protein [Pyramidobacter piscolens W5455]
 gi|282584041|gb|EFB89414.1| PHP domain protein [Pyramidobacter piscolens W5455]
          Length = 275

 Score = 46.9 bits (110), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 45/138 (32%), Gaps = 15/138 (10%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V +  HS  S  +G+ S   +           +++TD + +     F       GI+ + 
Sbjct: 4   VDMHFHSFCS--DGSDSPEALARLGKKRGLAVMSLTDHDTMKGVPAFMSMCRKLGIRAVS 61

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPS----IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           G ++  +    L +      P           +         + L +L          + 
Sbjct: 62  GVEISAEYPRTLHILGYNYDPQDEEFRAALAKIQYYREERNRRVLAKL---------NEL 112

Query: 128 SVRICLSWLQEIGTEGLI 145
            + I L  +Q+   +G+I
Sbjct: 113 GIPITLKDVQDEAGKGVI 130


>gi|212634745|ref|YP_002311269.1| phosphoesterase PHP, N-terminal:PHP [Shewanella piezotolerans WP3]
 gi|212556229|gb|ACJ28683.1| Phosphoesterase PHP, N-terminal:PHP [Shewanella piezotolerans WP3]
          Length = 334

 Score = 46.9 bits (110), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           V L  H++ S  +G L+ + ++++  +      AITD +      E  Q
Sbjct: 56  VDLHSHTTAS--DGQLTPSELIERAISKGVQVFAITDHDTTDGLAEAHQ 102


>gi|147920405|ref|YP_685820.1| DNA-directed DNA polymerase X [uncultured methanogenic archaeon
           RC-I]
 gi|110621216|emb|CAJ36494.1| DNA-directed DNA polymerase X [uncultured methanogenic archaeon
           RC-I]
          Length = 574

 Score = 46.9 bits (110), Expect = 0.017,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH+ +S  +G+ S+ ++     A     +AI D 
Sbjct: 343 LHVHTEWS--DGSSSIQDMAMAARAKGYEYVAICDH 376


>gi|325264395|ref|ZP_08131126.1| putative PHP domain protein [Clostridium sp. D5]
 gi|324030466|gb|EGB91750.1| putative PHP domain protein [Clostridium sp. D5]
          Length = 291

 Score = 46.9 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 71/227 (31%), Gaps = 15/227 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS  S  +G      ++D          AI D N+  +      +A   G++ I   
Sbjct: 6   LHMHSVISD-DGEFEPEKLMDMCREAGLKTAAIADHNSTRAVKRALARAGENGLELIPAV 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI---ELVSRMYLLDQGKQSVR 130
           +LD  ++   ++   G    P  P    +       Q L    ++ S+  L       + 
Sbjct: 65  ELDCFIR-GKELHVLGYGIDPDYPEYGKV------EQNLFDQEQVSSKERLGLAEAAGLI 117

Query: 131 ICLSWLQEIGTEGL----IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
           +    + E+  +G+    ++         +     +     ++    +   + D      
Sbjct: 118 VDHDLVYELAHDGVVTGEVIAEAALQNEENHGLLKDYLPGGKRSDNPYVNFYWDWCSQGK 177

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +   +     + V++        +  +      E++    D+  A
Sbjct: 178 CAYAPVEFISLDKAVEIITESGGVPILAHPGNNTKEDEALLQDIFKA 224


>gi|294631252|ref|ZP_06709812.1| phosphoesterase PHP, N [Streptomyces sp. e14]
 gi|292834585|gb|EFF92934.1| phosphoesterase PHP, N [Streptomyces sp. e14]
          Length = 285

 Score = 46.9 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++   AA     +A+TD +      E    A   G+  + G 
Sbjct: 5  LHTHSTAS--DGTDTPAELVRNAAAAGLDVVALTDHDTTRGHAEAL-AALPEGLTLVTGA 61

Query: 74 QLDI 77
          +L  
Sbjct: 62 ELSC 65


>gi|319792453|ref|YP_004154093.1| hypothetical protein Varpa_1772 [Variovorax paradoxus EPS]
 gi|315594916|gb|ADU35982.1| hypothetical protein Varpa_1772 [Variovorax paradoxus EPS]
          Length = 106

 Score = 46.9 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 3/57 (5%)

Query: 825 CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
            VD   G       L    GVG   ++ I+EA     F    D   RV   K  +  
Sbjct: 20  AVDVNKGTEAELDGLN---GVGPAMSKRILEARKQGEFKDWPDLMQRVKGVKEKKAQ 73


>gi|119493968|ref|ZP_01624528.1| hypothetical protein L8106_04136 [Lyngbya sp. PCC 8106]
 gi|119452289|gb|EAW33485.1| hypothetical protein L8106_04136 [Lyngbya sp. PCC 8106]
          Length = 253

 Score = 46.9 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           +   PS  +  +H+  S  +G L  N ++++  A     +AITD +      E  +
Sbjct: 47  INSCPSSYNFHMHTVKS--DGQLKPNQLIEQAIAIGLKGLAITDHHTTQGYTEAQR 100


>gi|311069350|ref|YP_003974273.1| hypothetical protein BATR1942_12055 [Bacillus atrophaeus 1942]
 gi|310869867|gb|ADP33342.1| hypothetical protein BATR1942_12055 [Bacillus atrophaeus 1942]
          Length = 570

 Score = 46.9 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  +           +AITD 
Sbjct: 338 LHMHSAWS--DGAFSIREMAKACMEKGYEYMAITDH 371


>gi|17545859|ref|NP_519261.1| hypothetical protein RSc1140 [Ralstonia solanacearum GMI1000]
 gi|17428153|emb|CAD14842.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000]
          Length = 286

 Score = 46.9 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 2/108 (1%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           + +    +P    L  HS+ S  +G L+   +  + AA      A+TD + +       +
Sbjct: 1   MLKRSASAPINADLHCHSTVS--DGLLAPREVAARAAAHGVTLWALTDHDEVGGQAAARE 58

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
            A + G+  + G ++ +                     +  L  T  G
Sbjct: 59  AAESLGMDYLAGVEISVTWAGRTLHIVGLGIDPDDAALVQGLARTRSG 106


>gi|290957579|ref|YP_003488761.1| hypothetical protein SCAB_31021 [Streptomyces scabiei 87.22]
 gi|260647105|emb|CBG70204.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 286

 Score = 46.9 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++ +  A     +A+TD +      E    A   G+  + G 
Sbjct: 5  LHCHSTAS--DGTDTPAELVVEARAAGLDVVALTDHDTTRGHAEAI-AALPEGLTLVTGA 61

Query: 74 QLDIDMQ 80
          +L   + 
Sbjct: 62 ELSCRLD 68


>gi|238763132|ref|ZP_04624098.1| hypothetical protein ykris0001_40710 [Yersinia kristensenii ATCC
          33638]
 gi|238698631|gb|EEP91382.1| hypothetical protein ykris0001_40710 [Yersinia kristensenii ATCC
          33638]
          Length = 292

 Score = 46.9 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
          L  H++ S  +G+LS + ++ + A  +   +AITD +      E +
Sbjct: 18 LHSHTTAS--DGSLSPSALVIRAAQMRVGVLAITDHDTTAGLAEAA 61


>gi|257389025|ref|YP_003178798.1| PHP domain protein [Halomicrobium mukohataei DSM 12286]
 gi|257171332|gb|ACV49091.1| PHP domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 577

 Score = 46.9 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 17/115 (14%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSAL------------EF 58
           L  H+S+S  +G  ++  +++  AA     +AITD      +   +            E 
Sbjct: 350 LHTHTSWS--DGRATIVEMIEGAAAFGHDYLAITDHATGPGMVGGVGLDDEQLRDQLAEI 407

Query: 59  SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
              A  AGI    G + ++     + + +   +    V +        +G +RLI
Sbjct: 408 RAAADEAGIDVFAGVEANVAADGQVSVADDLLSDLDLVVASPHAALDGDGTERLI 462


>gi|296102092|ref|YP_003612238.1| phosphotransferase domain-containing protein [Enterobacter
          cloacae subsp. cloacae ATCC 13047]
 gi|295056551|gb|ADF61289.1| phosphotransferase domain-containing protein [Enterobacter
          cloacae subsp. cloacae ATCC 13047]
          Length = 293

 Score = 46.9 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  H+  S  +G L+   ++ +    +   +AITD + 
Sbjct: 12 LHSHTQAS--DGLLTPEALVHRAVEMRVGTLAITDHDT 47


>gi|255657484|ref|ZP_05402893.1| putative phophoesterase [Clostridium difficile QCD-23m63]
 gi|296449080|ref|ZP_06890870.1| PHP family metal-dependent phosphoesterase [Clostridium difficile
          NAP08]
 gi|296879903|ref|ZP_06903876.1| PHP family metal-dependent phosphoesterase [Clostridium difficile
          NAP07]
 gi|296262173|gb|EFH08978.1| PHP family metal-dependent phosphoesterase [Clostridium difficile
          NAP08]
 gi|296429192|gb|EFH15066.1| PHP family metal-dependent phosphoesterase [Clostridium difficile
          NAP07]
          Length = 278

 Score = 46.9 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            L  H++ S  +   +   I+ K A      +AIT+ + L    E        GI  I 
Sbjct: 3  TELHCHTNIS--DNNFTTEEIIKKAAEKNINILAITNHDTLSGLDEAIVLGEHYGITIIP 60

Query: 72 GCQLDIDMQDNLKMTN 87
          G ++      N K  +
Sbjct: 61 GIEISAYDYINRKRVH 76


>gi|92112839|ref|YP_572767.1| PHP-like protein [Chromohalobacter salexigens DSM 3043]
 gi|91795929|gb|ABE58068.1| PHP-like protein [Chromohalobacter salexigens DSM 3043]
          Length = 297

 Score = 46.9 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L +HS+ S  +GALS   + +   A       +TD + +    E  + A + G++
Sbjct: 20 LHMHSTAS--DGALSPCALAEACQAKGVTRFCLTDHDTVAGVAEAQRHADSLGLR 72


>gi|261418292|ref|YP_003251974.1| hypothetical protein GYMC61_0823 [Geobacillus sp. Y412MC61]
 gi|319767748|ref|YP_004133249.1| PHP domain protein [Geobacillus sp. Y412MC52]
 gi|261374749|gb|ACX77492.1| PHP domain protein [Geobacillus sp. Y412MC61]
 gi|317112614|gb|ADU95106.1| PHP domain protein [Geobacillus sp. Y412MC52]
          Length = 574

 Score = 46.9 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA SL  + +         IAITD 
Sbjct: 340 LHMHSAWS--DGACSLAELAEACRRRGYRYIAITDH 373


>gi|170692322|ref|ZP_02883485.1| putative DNA uptake protein, ComEA-like protein [Burkholderia
           graminis C4D1M]
 gi|170142752|gb|EDT10917.1| putative DNA uptake protein, ComEA-like protein [Burkholderia
           graminis C4D1M]
          Length = 217

 Score = 46.9 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   A+ I+E    + PF   +D  +RV      
Sbjct: 33  ALESVKGIGPAHAKAIIEERSKNGPFKDADDLAARVKGIGSK 74


>gi|222479778|ref|YP_002566015.1| histidinol phosphate phosphatase HisJ family [Halorubrum
          lacusprofundi ATCC 49239]
 gi|222452680|gb|ACM56945.1| histidinol phosphate phosphatase HisJ family [Halorubrum
          lacusprofundi ATCC 49239]
          Length = 283

 Score = 46.9 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           VH++YS  +GA  L+ ++D         + ITD  N+
Sbjct: 26 HVHTNYS--DGAF-LSRMVDAATDAGLDGVGITDHCNV 60


>gi|73669152|ref|YP_305167.1| bifunctional DNA polymerase X family protein/ histidinol
           phosphatase [Methanosarcina barkeri str. Fusaro]
 gi|72396314|gb|AAZ70587.1| DNA polymerase X family / putative histidinol phosphatase
           [Methanosarcina barkeri str. Fusaro]
          Length = 584

 Score = 46.9 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+ YS  EG  SL  +++K        IA+TD 
Sbjct: 352 LHMHTEYS--EGKDSLKTMIEKAETLGYEYIAVTDH 385


>gi|55981119|ref|YP_144416.1| DNA polymerase beta family protein [Thermus thermophilus HB8]
 gi|55772532|dbj|BAD70973.1| DNA polymerase beta family (X family) [Thermus thermophilus HB8]
          Length = 575

 Score = 46.9 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           LQVHS+YS  +G  +L  + +         +A+TD 
Sbjct: 341 LQVHSTYS--DGQNTLEELWEAAKTMGYRYLAVTDH 374


>gi|146311855|ref|YP_001176929.1| phosphotransferase domain-containing protein [Enterobacter sp.
          638]
 gi|145318731|gb|ABP60878.1| PHP C-terminal domain protein [Enterobacter sp. 638]
          Length = 298

 Score = 46.9 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  H+  S  +G L+   ++ +    +   +AITD + 
Sbjct: 16 LHSHTQAS--DGLLTPEALVHRAVEMRVGTLAITDHDT 51


>gi|46199091|ref|YP_004758.1| DNA-dependent DNA polymerase beta chain [Thermus thermophilus HB27]
 gi|46196715|gb|AAS81131.1| DNA-dependent DNA polymerase beta chain [Thermus thermophilus HB27]
          Length = 575

 Score = 46.9 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           LQVHS+YS  +G  +L  + +         +A+TD 
Sbjct: 341 LQVHSTYS--DGQNTLEELWEAAKTMGYRYLAVTDH 374


>gi|86147037|ref|ZP_01065354.1| putative metal-dependent phosphoesterase YciV [Vibrio sp. MED222]
 gi|85835102|gb|EAQ53243.1| putative metal-dependent phosphoesterase YciV [Vibrio sp. MED222]
          Length = 284

 Score = 46.9 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          L  H++ S  +G L+   ++D+       A+AITD +      E 
Sbjct: 5  LHSHTTAS--DGRLTPPELIDRALGFNIEALAITDHDTTDGLAEA 47


>gi|197116665|ref|YP_002137092.1| DNA polymerase IV domain-/PHP phosphoesterase domain-containing
           protein [Geobacter bemidjiensis Bem]
 gi|197086025|gb|ACH37296.1| DNA polymerase IV (family X) domain and PHP phosphoesterase domain
           protein PRK08609 [Geobacter bemidjiensis Bem]
          Length = 578

 Score = 46.9 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS +S  +GA  +  +++         IA+TD 
Sbjct: 340 LHVHSRWS--DGAHGIAELVEAARERGLSYIAVTDH 373


>gi|110669006|ref|YP_658817.1| hypothetical protein HQ3120A [Haloquadratum walsbyi DSM 16790]
 gi|109626753|emb|CAJ53220.1| conserved hypothetical protein [Haloquadratum walsbyi DSM 16790]
          Length = 258

 Score = 46.9 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 2/129 (1%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            VHS+ S  +       +L++ A     AI +TD + L  +L  +  A   G+  I G +
Sbjct: 10  HVHSAASY-DADDPAELLLEQAAEIGLDAIVVTDHDVLHESLRAADLAPRYGLIGIPGVE 68

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR-ICL 133
           +       L +      P     +  +      G   ++    +       K+ +R +  
Sbjct: 69  VSTADGHLLAIGVTSLPPRRAPMTKTVSWVRDRGGVAIVPHPFQRSRHGIRKRRLRQVDP 128

Query: 134 SWLQEIGTE 142
             ++   + 
Sbjct: 129 DAIEVYNSW 137


>gi|116754302|ref|YP_843420.1| hypothetical protein Mthe_0995 [Methanosaeta thermophila PT]
 gi|116665753|gb|ABK14780.1| Protein of unknown function DUF655 [Methanosaeta thermophila PT]
          Length = 201

 Score = 46.9 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 21/58 (36%)

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             + L  + G+G      I+      PF S +D   RV       +++   +    +D
Sbjct: 120 RMHGLELLPGIGKKLMWAILNERKKGPFRSFKDLSERVKGLHNPEKLIAKRIEEELMD 177


>gi|15921506|ref|NP_377175.1| hypothetical protein ST1243 [Sulfolobus tokodaii str. 7]
 gi|15622292|dbj|BAB66284.1| 220aa long conserved hypothetical protein [Sulfolobus tokodaii
          str. 7]
          Length = 220

 Score = 46.9 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
           VH+ YS  +G  S   +L+         IAITD + 
Sbjct: 7  HVHTYYS--DGKESPKEMLNYALKVGLNGIAITDHDT 41


>gi|84394231|ref|ZP_00992959.1| putative metal-dependent phosphoesterase YciV [Vibrio splendidus
          12B01]
 gi|84375145|gb|EAP92064.1| putative metal-dependent phosphoesterase YciV [Vibrio splendidus
          12B01]
          Length = 289

 Score = 46.9 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          L  H++ S  +G L+   ++D+       A+AITD +      E 
Sbjct: 5  LHSHTTAS--DGRLTPPELIDRALGFNIEALAITDHDTTDGLAEA 47


>gi|295706822|ref|YP_003599897.1| DNA-directed DNA polymerase X [Bacillus megaterium DSM 319]
 gi|294804481|gb|ADF41547.1| DNA-directed DNA polymerase X [Bacillus megaterium DSM 319]
          Length = 570

 Score = 46.9 bits (110), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +   A     +AITD 
Sbjct: 338 LHMHSTWS--DGAYSIEEMAEACRARGYEYMAITDH 371


>gi|289675280|ref|ZP_06496170.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. syringae
           FF5]
          Length = 50

 Score = 46.9 bits (110), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 10/60 (16%)

Query: 51  NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
           N+ S ++F + A  +GI+PI G  L +           G+     +  I LL   A GY+
Sbjct: 1   NMCSLVKFYKAAQGSGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAPGYR 50


>gi|257886981|ref|ZP_05666634.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257823035|gb|EEV49967.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
          Length = 271

 Score = 46.9 bits (110), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 2/42 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L VHS YS   G      +L      +   +AI D +     
Sbjct: 5  LHVHSCYS--NGFFHPKELLSLATTQEVNHLAIVDHHTFAGI 44


>gi|21226610|ref|NP_632532.1| isoleucyl-tRNA synthetase [Methanosarcina mazei Go1]
 gi|20904888|gb|AAM30204.1| Isoleucyl-tRNA synthetase [Methanosarcina mazei Go1]
          Length = 230

 Score = 46.9 bits (110), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L VHS +S  +   S  +I++          AI D + +   L  ++KA   G++
Sbjct: 11 LHVHSEHS-KDSNSSHRDIIEVARRRGLDGFAICDHDTVEGGLACAEKALELGLE 64


>gi|159903425|ref|YP_001550769.1| metal-dependent phosphoesterase [Prochlorococcus marinus str. MIT
          9211]
 gi|159888601|gb|ABX08815.1| Predicted metal-dependent phosphoesterase (PHP family)
          [Prochlorococcus marinus str. MIT 9211]
          Length = 217

 Score = 46.9 bits (110), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
             P  ++L  H+  S  +G+LS   ++ +  +     IA+TD + +
Sbjct: 18 NSCPKNINLHCHTLLS--DGSLSPIELISQAYSIGLRHIAVTDHHTV 62


>gi|300087793|ref|YP_003758315.1| PHP domain-containing protein [Dehalogenimonas
          lykanthroporepellens BL-DC-9]
 gi|299527526|gb|ADJ25994.1| PHP domain protein [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 220

 Score = 46.9 bits (110), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          V L +H+ +S  +   +   +  K       AIAI D   +  ALEF +
Sbjct: 4  VDLHIHTFHSP-DANTTFEELTSKCRQVGLDAIAIADHGTIEGALEFLE 51


>gi|254507057|ref|ZP_05119195.1| php domain containing protein (trph) [Vibrio parahaemolyticus 16]
 gi|219550052|gb|EED27039.1| php domain containing protein (trph) [Vibrio parahaemolyticus 16]
          Length = 283

 Score = 46.9 bits (110), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H++ S  +G L  N ++D+  +     IAITD + +              + 
Sbjct: 5  LHSHTTAS--DGRLPPNELIDRALSFNLEVIAITDHDTVDGLAPAHDYINENQLP 57


>gi|281354905|ref|ZP_06241399.1| PHP domain protein [Victivallis vadensis ATCC BAA-548]
 gi|281317785|gb|EFB01805.1| PHP domain protein [Victivallis vadensis ATCC BAA-548]
          Length = 944

 Score = 46.9 bits (110), Expect = 0.020,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             H+ +S  +G  +   +L +  A     + I+D + +  AL   +     G
Sbjct: 677 HTHTIFS--DGQSTPAGLLAEAPAAGFDFLVISDHDEVAGALRLMENMRRNG 726


>gi|221068834|ref|ZP_03544939.1| PHP domain protein [Comamonas testosteroni KF-1]
 gi|220713857|gb|EED69225.1| PHP domain protein [Comamonas testosteroni KF-1]
          Length = 296

 Score = 46.9 bits (110), Expect = 0.020,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 63/179 (35%), Gaps = 15/179 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +G L+   +  + A       A+TD + +      +  A +AG+  + G 
Sbjct: 19  LHCHSVVS--DGTLTPEQLALRAAERGVELWALTDHDEVGGQHRAAAAAKSAGLDYLTGT 76

Query: 74  QLDIDM-QDNLKMTNQGKTPFPTVPSIVLLVSTAEGY----QRLIELVSRMYLLDQGKQS 128
           ++ +      + +   G        +  L   T  G     + +   +    +    + +
Sbjct: 77  EISVSFSGCGVHIVGLGFDADDAALTQGLY-DTRHGRGPRAREMARQLELAGIAGAYEGA 135

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                  L+  G   LI  T  +   ++     ++ +V ++ L   K  +   ++ NL 
Sbjct: 136 -------LRHAGNPELISRTHFARFLVETGVCADTYEVFKRYLTEGKPGYVAHVWANLH 187


>gi|158335490|ref|YP_001516662.1| phosphotransferase domain-containing protein [Acaryochloris
          marina MBIC11017]
 gi|158305731|gb|ABW27348.1| PHP domain protein [Acaryochloris marina MBIC11017]
          Length = 226

 Score = 46.9 bits (110), Expect = 0.020,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 13 HLQ-VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          HL  +HS     +G L    ++ +       ++AITD +++       +
Sbjct: 33 HLHTIHS-----DGRLEPQQLVQQAIDTGITSLAITDHHSVGGYWRALE 76


>gi|89098888|ref|ZP_01171768.1| hypothetical protein B14911_05961 [Bacillus sp. NRRL B-14911]
 gi|89086292|gb|EAR65413.1| hypothetical protein B14911_05961 [Bacillus sp. NRRL B-14911]
          Length = 572

 Score = 46.9 bits (110), Expect = 0.021,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA ++  + +         +AITD 
Sbjct: 340 LHMHSTWS--DGAHTIEEMAEACRKRGYQYLAITDH 373


>gi|308272042|emb|CBX28650.1| Uncharacterized protein MJ1295 [uncultured Desulfobacterium sp.]
          Length = 211

 Score = 46.5 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  H+ +S  +G L  + +  +        IA TD  
Sbjct: 4  LHTHTFFS--DGVLIPSELARRAEDAGLKGIAFTDHG 38


>gi|148643435|ref|YP_001273948.1| RNA-binding protein [Methanobrevibacter smithii ATCC 35061]
 gi|222445677|ref|ZP_03608192.1| hypothetical protein METSMIALI_01318 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349775|ref|ZP_05975192.1| DNA-binding protein [Methanobrevibacter smithii DSM 2374]
 gi|148552452|gb|ABQ87580.1| predicted RNA-binding protein [Methanobrevibacter smithii ATCC
           35061]
 gi|222435242|gb|EEE42407.1| hypothetical protein METSMIALI_01318 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860559|gb|EFC92857.1| DNA-binding protein [Methanobrevibacter smithii DSM 2374]
          Length = 218

 Score = 46.5 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           L  I G+G      I+EA  +KPF+S ED   R+ S      ++ + V 
Sbjct: 131 LELIPGIGKKYMWEIVEARKEKPFESFEDITKRIPSLNNPAEMIVNRVK 179


>gi|292655208|ref|YP_003535105.1| PHP domain-containing protein [Haloferax volcanii DS2]
 gi|291370636|gb|ADE02863.1| PHP domain protein [Haloferax volcanii DS2]
          Length = 227

 Score = 46.5 bits (109), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          V L  HSS S  +G   +  +L++  A    A+A+TD +
Sbjct: 4  VELHSHSSLSY-DGRDPIEYLLEQAVAVGLDALAVTDHD 41


>gi|154249409|ref|YP_001410234.1| phosphotransferase domain-containing protein [Fervidobacterium
          nodosum Rt17-B1]
 gi|154153345|gb|ABS60577.1| PHP domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 280

 Score = 46.5 bits (109), Expect = 0.022,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
          V    H++ S  +G L  N ++ K        +AITD + + 
Sbjct: 3  VDFHTHTTCS--DGTLEPNELVKKAKLIGIEVLAITDHDTIC 42


>gi|294501474|ref|YP_003565174.1| DNA-directed DNA polymerase X [Bacillus megaterium QM B1551]
 gi|294351411|gb|ADE71740.1| DNA-directed DNA polymerase X [Bacillus megaterium QM B1551]
          Length = 570

 Score = 46.5 bits (109), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +   A     +AITD 
Sbjct: 338 LHMHSTWS--DGAYSIEEMAEACRARGYEYMAITDH 371


>gi|206901108|ref|YP_002251308.1| DNA polymerase beta family [Dictyoglomus thermophilum H-6-12]
 gi|206740211|gb|ACI19269.1| DNA polymerase beta family [Dictyoglomus thermophilum H-6-12]
          Length = 580

 Score = 46.5 bits (109), Expect = 0.022,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH+ +S  +GA +L  +++         + I+D 
Sbjct: 345 HVHTDWS--DGANTLEEMVETAYRLGYKYVVISDH 377


>gi|254526857|ref|ZP_05138909.1| PHP family metal-dependent phosphoesterase [Prochlorococcus
          marinus str. MIT 9202]
 gi|221538281|gb|EEE40734.1| PHP family metal-dependent phosphoesterase [Prochlorococcus
          marinus str. MIT 9202]
          Length = 215

 Score = 46.5 bits (109), Expect = 0.022,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 7  KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
            P  ++   H+++S  +G++   ++LD+   ++   ++ITD +++
Sbjct: 17 SCPHIINFHCHTNFS--DGSMCPEDLLDQAFRNKLQFLSITDHHSI 60


>gi|157413347|ref|YP_001484213.1| metal-dependent phosphoesterase [Prochlorococcus marinus str. MIT
          9215]
 gi|157387922|gb|ABV50627.1| Predicted metal-dependent phosphoesterase (PHP family)
          [Prochlorococcus marinus str. MIT 9215]
          Length = 215

 Score = 46.5 bits (109), Expect = 0.022,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 7  KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
            P  ++   H+++S  +G++   ++LD+   ++   ++ITD +++
Sbjct: 17 SCPHIINFHCHTNFS--DGSMCPEDLLDQAFRNKLQFLSITDHHSI 60


>gi|299067191|emb|CBJ38387.1| conserved protein of unknown function, PHP domain-like [Ralstonia
           solanacearum CMR15]
          Length = 286

 Score = 46.5 bits (109), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L+   +  + AA      A+TD + +       + A + G+  + G 
Sbjct: 14  LHCHSTVS--DGLLAPREVAARAAAHGVTLWALTDHDEVGGQAAAREAAESLGMDYLAGV 71

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           ++ +                     +  L  T  G
Sbjct: 72  EISVTWAGRTLHIVGLGIDPDDAALVQGLARTRSG 106


>gi|256831944|ref|YP_003160671.1| PHP domain-containing protein [Jonesia denitrificans DSM 20603]
 gi|256685475|gb|ACV08368.1| PHP domain protein [Jonesia denitrificans DSM 20603]
          Length = 280

 Score = 46.5 bits (109), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  S  +G  S   ++    +     +A+TD ++       +++A   G+  + GC
Sbjct: 5  LHTHSHVS--DGTDSPEQVMRDAHSAGLDVVALTDHDSTLGWEAAARQARDLGLIFVPGC 62


>gi|157693277|ref|YP_001487739.1| hypothetical protein BPUM_2517 [Bacillus pumilus SAFR-032]
 gi|157682035|gb|ABV63179.1| DNA polymerase beta [Bacillus pumilus SAFR-032]
          Length = 570

 Score = 46.5 bits (109), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 9/51 (17%)

Query: 6   EKSPSFVHL-------QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           ++S  FV L        +HS++S  +GA S+  + +   A     +AITD 
Sbjct: 323 KESMQFVELRDIKGDLHMHSTWS--DGAFSIREMAEACIAKGYEYMAITDH 371


>gi|15791255|ref|NP_281079.1| hypothetical protein VNG2493C [Halobacterium sp. NRC-1]
 gi|169237013|ref|YP_001690213.1| hypothetical protein OE4492F [Halobacterium salinarum R1]
 gi|10581888|gb|AAG20559.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167728079|emb|CAP14867.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 267

 Score = 46.5 bits (109), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 12 VH--LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          VH  L VH++ S  +G L+++ + D        A+AITD + L  AL+ 
Sbjct: 2  VHADLHVHTTNS--DGTLTIDAVPDAAHDAGVTAVAITDHDRLHPALDA 48


>gi|184200489|ref|YP_001854696.1| hypothetical protein KRH_08430 [Kocuria rhizophila DC2201]
 gi|183580719|dbj|BAG29190.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 283

 Score = 46.5 bits (109), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 2/87 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +G  +  ++     A      A+TD +      E    A + G+  + G 
Sbjct: 5   LHTHSIAS--DGTETPADVARSAHAAGLSVFALTDHDTTAGWQEAGDTAVSLGVAFVPGM 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           ++     D + +        P    +V
Sbjct: 63  EITCTTADGISVHMLSYLHDPAYQPLV 89


>gi|116619976|ref|YP_822132.1| phosphotransferase domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223138|gb|ABJ81847.1| PHP C-terminal domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 581

 Score = 46.5 bits (109), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 19/137 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFS------ALEFSQKACA 64
           L +H+  +  +G  +L  + +         IAITD +   ++ +       +EF+++   
Sbjct: 349 LHMHT--TETDGRATLEEMAEAAREKGYEYIAITDHSKALSMTNGLDEKRVVEFARRVRE 406

Query: 65  -----AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ---RLIELV 116
                 GI+   G + DI     + + N        V   V      EG +   RL+  +
Sbjct: 407 INRAGLGIRIFSGIECDILKDGAMDLENDALAELDLVIGSVHSHMNQEGAEMTDRLLRAL 466

Query: 117 SRMYLLDQGKQSVRICL 133
              +L   G  + RI L
Sbjct: 467 ECPHLRILGHPTGRILL 483


>gi|288928714|ref|ZP_06422560.1| alpha subunit superfamily DNA polymerase III [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288329698|gb|EFC68283.1| alpha subunit superfamily DNA polymerase III [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 165

 Score = 46.5 bits (109), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV-GPGRGSGAGSVTAYALTI 392
             + R R+D EL ++  +  +   L +   +  A+++   V  P +G+ AGS+ AY L I
Sbjct: 36  TDEMRTRIDDELRLLLNLGLADNLLTLKAIVDGARQDLEAVPEPFKGNLAGSIVAYCLGI 95

Query: 393 TDIDPLRFSLL 403
           T  +PL  +LL
Sbjct: 96  TTGNPLEKNLL 106


>gi|194017065|ref|ZP_03055677.1| DNA polymerase beta [Bacillus pumilus ATCC 7061]
 gi|194010933|gb|EDW20503.1| DNA polymerase beta [Bacillus pumilus ATCC 7061]
          Length = 570

 Score = 46.5 bits (109), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 9/51 (17%)

Query: 6   EKSPSFVHL-------QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           ++S  FV L        +HS++S  +GA S+  + +   A     +AITD 
Sbjct: 323 KESMQFVELKDIKGDLHMHSTWS--DGAFSIREMAEACIAKGYEYMAITDH 371


>gi|226362690|ref|YP_002780468.1| hypothetical protein ROP_32760 [Rhodococcus opacus B4]
 gi|226241175|dbj|BAH51523.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 338

 Score = 46.5 bits (109), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G   L  ++ + AA      AITD 
Sbjct: 100 LHTHSDWS--DGRCPLREMMRRAAALGHEYCAITDH 133


>gi|85859087|ref|YP_461289.1| hypothetical protein SYN_03192 [Syntrophus aciditrophicus SB]
 gi|85722178|gb|ABC77121.1| PHP family phosphoesterase [Syntrophus aciditrophicus SB]
          Length = 194

 Score = 46.5 bits (109), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN-------LFSALEFSQKACAAG 66
          L  H+ +S  +G    + ++ +       A+A+TD  +       L   +   +K   A 
Sbjct: 4  LHTHTIHS--DGEFLPSELVRRARVVGYRAMALTDHGDHSNLELILPGIVRVCKKLSKAY 61

Query: 67 IQPIIG 72
            P+I 
Sbjct: 62 DMPVIP 67


>gi|207722876|ref|YP_002253310.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
 gi|207743519|ref|YP_002259911.1| hypothetical protein RSIPO_01698 [Ralstonia solanacearum IPO1609]
 gi|206588060|emb|CAQ18640.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
 gi|206594917|emb|CAQ61844.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
          Length = 286

 Score = 46.5 bits (109), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L+   +  + AA      A+TD + +       + A + G+  + G 
Sbjct: 14  LHCHSTVS--DGLLAPREVAARAAAHGVTLWALTDHDEVGGQAAAREAAESLGMGYLPGV 71

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           ++ +                     +  L  T  G
Sbjct: 72  EISVTWAGRTLHIVGLGIDPDDAALVQGLARTRSG 106


>gi|197285201|ref|YP_002151073.1| hypothetical protein PMI1342 [Proteus mirabilis HI4320]
 gi|227355626|ref|ZP_03840020.1| PHP family metal-dependent phosphoesterase [Proteus mirabilis
          ATCC 29906]
 gi|194682688|emb|CAR42841.1| conserved hypothetical protein [Proteus mirabilis HI4320]
 gi|227164233|gb|EEI49126.1| PHP family metal-dependent phosphoesterase [Proteus mirabilis
          ATCC 29906]
          Length = 286

 Score = 46.5 bits (109), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H++ S  +G LS + ++D+    Q   +AITD +   +            + 
Sbjct: 14 LHSHTTAS--DGELSPDELIDRAIEKQITVLAITDHDTTAAIQPAKNYIAEKSLP 66


>gi|254381817|ref|ZP_04997180.1| PHP C-terminal domain containing protein [Streptomyces sp. Mg1]
 gi|194340725|gb|EDX21691.1| PHP C-terminal domain containing protein [Streptomyces sp. Mg1]
          Length = 291

 Score = 46.5 bits (109), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA--AGIQPII 71
          L  HS+ S  +G  S   ++   AA     +A+TD + +    E         AG+  + 
Sbjct: 5  LHAHSTAS--DGTDSPAELMRNAAAAGLDVVALTDHDTVGGYAEAIAALRGIPAGLTLVT 62

Query: 72 GCQLDIDMQ 80
          G +L   + 
Sbjct: 63 GAELSCRLD 71


>gi|312144372|ref|YP_003995818.1| PHP domain protein [Halanaerobium sp. 'sapolanicus']
 gi|311905023|gb|ADQ15464.1| PHP domain protein [Halanaerobium sp. 'sapolanicus']
          Length = 284

 Score = 46.5 bits (109), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          ++K    + L +H++ S  +GAL+   ++ K         ++TD +N  +  E  ++A  
Sbjct: 1  MKKKRKKIDLHMHTTAS--DGALTPKELVQKCLEFDLDVFSVTDHDNTTALRELEKEADK 58

Query: 65 AGIQPIIGCQLDIDMQD 81
            I+ + G ++     +
Sbjct: 59 YPIEFVPGIEISTYRGE 75


>gi|145641428|ref|ZP_01797007.1| fumarate hydratase [Haemophilus influenzae R3021]
 gi|145273971|gb|EDK13838.1| fumarate hydratase [Haemophilus influenzae 22.4-21]
          Length = 257

 Score = 46.5 bits (109), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 22/55 (40%)

Query: 28 SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
          S   ++ +  A     +A+ D + +    E    A   GI+ I G ++  + +  
Sbjct: 2  SPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGVEISTNWEGR 56


>gi|269837382|ref|YP_003319610.1| PHP domain-containing protein [Sphaerobacter thermophilus DSM
          20745]
 gi|269786645|gb|ACZ38788.1| PHP domain protein [Sphaerobacter thermophilus DSM 20745]
          Length = 307

 Score = 46.5 bits (109), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V   +H+  S  +G  + + ++D +        A+ D + + S  E  + A   GI  I 
Sbjct: 14 VDFHLHTRAS--DGGWTPHQLVDHLVEHGFKVAAVCDHDTMRSVPEAMEHAANRGILIIP 71

Query: 72 GCQLDIDMQDNLK 84
          G ++    +D   
Sbjct: 72 GVEVTTWWEDRQW 84


>gi|238061545|ref|ZP_04606254.1| hypothetical protein MCAG_02511 [Micromonospora sp. ATCC 39149]
 gi|237883356|gb|EEP72184.1| hypothetical protein MCAG_02511 [Micromonospora sp. ATCC 39149]
          Length = 357

 Score = 46.5 bits (109), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 62/227 (27%), Gaps = 26/227 (11%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPI 70
             HS +S  +G   +  +           + +TD      +          A     Q  
Sbjct: 110 HTHSDWS--DGGSPIEEMALAAVELGHEYVVLTDH-----SPRLKVARGLTADRLRRQLD 162

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
               ++  + +  ++    +       S+       E   RL  +V  ++      +  R
Sbjct: 163 HVAAVNEALPEGFRILTGIEVDILADGSL---DQDEELLARLDVVVGSVHS-GLNDERGR 218

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDR--AFFFNSSQVA-EKRLLTFKKLFGDRLYVNLQ 187
           +    L  I    L +L   +   +    A    +   A   R         D ++    
Sbjct: 219 MTRRMLAAIANPHLDVLGHCTGRMVSSRPAGVTGAGDRAHRARTRAESDFDADAVFAACA 278

Query: 188 RH--------RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            H        R   +    ++++ A           ++    + D++
Sbjct: 279 EHDVAVEINSRPERQDPPKRLIRRALEVGCRFAINTDAHAPGQLDWQ 325


>gi|253698904|ref|YP_003020093.1| PHP domain protein [Geobacter sp. M21]
 gi|251773754|gb|ACT16335.1| PHP domain protein [Geobacter sp. M21]
          Length = 578

 Score = 46.5 bits (109), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS +S  +GA +++ +++         +A+TD 
Sbjct: 340 LHVHSRWS--DGAHAVSELVEAARERGLSYLAVTDH 373


>gi|332178641|gb|AEE14330.1| PHP domain protein [Thermodesulfobium narugense DSM 14796]
          Length = 573

 Score = 46.5 bits (109), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH++YS  +G  S+  ++D   +     I +TD 
Sbjct: 328 LHVHTNYS--DGTHSIEELVDFYMSKGFQYIVLTDH 361


>gi|298246013|ref|ZP_06969819.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297553494|gb|EFH87359.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 589

 Score = 46.5 bits (109), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 11/77 (14%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+YS  +G  +L  +++         + ITD          S+ A  AG       
Sbjct: 350 LHAHSTYS--DGQKTLREMVEGCIERGYSYLGITDH---------SKAAAYAGGLSEEDV 398

Query: 74  QLDIDMQDNLKMTNQGK 90
           +      D +    QG+
Sbjct: 399 RRQWAEIDQINAELQGR 415


>gi|81299654|ref|YP_399862.1| phosphoesterase PHP-like [Synechococcus elongatus PCC 7942]
 gi|81168535|gb|ABB56875.1| Phosphoesterase PHP-like [Synechococcus elongatus PCC 7942]
          Length = 236

 Score = 46.5 bits (109), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          +  P   +  +H++ S  +G L    ++++  A     +AITD +     +   + ACA
Sbjct: 32 DSCPRLYNFHLHTTCS--DGKLQPREVMEQAIAIGLRGLAITDHHG----VRGYEAACA 84


>gi|20089612|ref|NP_615687.1| DNA-dependent DNA polymerase family X protein [Methanosarcina
           acetivorans C2A]
 gi|19914532|gb|AAM04167.1| DNA-directed DNA polymerase, family X [Methanosarcina acetivorans
           C2A]
          Length = 588

 Score = 46.5 bits (109), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H+ YS  EG  SL  ++ K        IA+TD 
Sbjct: 357 HLHTDYS--EGRASLETMVKKAETMGYEYIAVTDH 389


>gi|222480531|ref|YP_002566768.1| PHP domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222453433|gb|ACM57698.1| PHP domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 308

 Score = 46.5 bits (109), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 1/94 (1%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            VHS  S  +G   +  IL+  +     A+ ITD + +  +   ++ A   G+  I G +
Sbjct: 11  HVHSDDSY-DGHEPVELILEHASEIGLDAVVITDHDVIGESKRAAEIADEYGLIGIPGVE 69

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           +       L +  +   P        +      G
Sbjct: 70  VSTAHGHLLAVGVERMPPRRRPYDETIAWIHEHG 103


>gi|218961480|ref|YP_001741255.1| predicted metal-dependent phosphoesterase (PHP family)
          [Candidatus Cloacamonas acidaminovorans]
 gi|167730137|emb|CAO81049.1| predicted metal-dependent phosphoesterase (PHP family)
          [Candidatus Cloacamonas acidaminovorans]
          Length = 245

 Score = 46.5 bits (109), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 14 LQVHSSYSLLEGA-LSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          L +HS  S   G  +S N+I+ ++       +AITD N++ +   + + A   G+
Sbjct: 8  LHIHSVLSPCGGLEMSPNSIMQRLKQFGIQWLAITDHNSMANCPAYQKVAEKEGL 62


>gi|91776229|ref|YP_545985.1| PHP-like protein [Methylobacillus flagellatus KT]
 gi|91710216|gb|ABE50144.1| PHP-like protein [Methylobacillus flagellatus KT]
          Length = 284

 Score = 46.5 bits (109), Expect = 0.026,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 88/276 (31%), Gaps = 27/276 (9%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           PS + L  HS+ S  +G L+   ++   A      +++TD ++       +  A   G++
Sbjct: 2   PSPIDLHSHSTVS--DGLLAPEALVAHAAEQGVKVLSLTDHDDTSGLAPAASAAAGHGME 59

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I G ++ +  +    +   G    P    +   +      + L    +    L++    
Sbjct: 60  FINGVEISVTWR-RKTIHVVGLRVDPDHGPLREGLEKIRAGRHL-RAENIAASLEKFGIK 117

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY----- 183
               L        +G+I     +   ID+ +  N   + ++ L+  K  + +  +     
Sbjct: 118 G--SLEGAYAHARQGIIGRAHFARYLIDQGYASNMKAIFKRYLVKGKPGYVEHHWATLEE 175

Query: 184 ----------VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
                     V +  H G YD  R + ++ L     L   A          D       +
Sbjct: 176 VVAWINGSGGVAVLAHPGRYDIGRSNMLLLLEEFRNLGGTAIEVVTGSHNADQFQEYAKL 235

Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
           A       S            +    EM  +  DLP
Sbjct: 236 AHMFGLKSSMGSDYHGPGHGNI----EMGRL-PDLP 266


>gi|332178821|gb|AEE14510.1| Soluble ligand binding domain protein [Thermodesulfobium narugense
           DSM 14796]
          Length = 193

 Score = 46.5 bits (109), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           L ++ G+G   A  I++      F  +EDF  R++        L+ L+
Sbjct: 144 LNSLPGIGKVIAERIIDERNRAKFKDIEDFKQRLNLSSAKIDRLKGLI 191


>gi|237808539|ref|YP_002892979.1| PHP domain-containing protein [Tolumonas auensis DSM 9187]
 gi|237500800|gb|ACQ93393.1| PHP domain protein [Tolumonas auensis DSM 9187]
          Length = 296

 Score = 46.5 bits (109), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L +HS++S L+  L +  ++D+  A+Q   +A+TD N++ S 
Sbjct: 6  LHMHSAFS-LDADLPVEILIDRCLANQVSTLAVTDHNSVHSV 46


>gi|168705124|ref|ZP_02737401.1| PHP-like protein [Gemmata obscuriglobus UQM 2246]
          Length = 307

 Score = 46.5 bits (109), Expect = 0.026,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 7/138 (5%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +P+   L  H+  S  +G  + + ++      +  A+AITD + L    E    A  A I
Sbjct: 32  APARADLHTHTVAS--DGDYTPSQVVALARQARLAAVAITDHDTLAGVPEAQHAAAGA-I 88

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI-VLLVSTAEGYQRLIELVSRMYLLDQGK 126
           + + G ++        ++   G    P  P +   L    EG +     +  + L+    
Sbjct: 89  EVVPGVEISTSFAGR-ELHLLGYFVRPDHPELGAALARVREGRRERFRAL--VALVQARG 145

Query: 127 QSVRICLSWLQEIGTEGL 144
            S+    + L E   + L
Sbjct: 146 ASIPDDRARLTETAADSL 163


>gi|239816991|ref|YP_002945901.1| PHP domain protein [Variovorax paradoxus S110]
 gi|239803568|gb|ACS20635.1| PHP domain protein [Variovorax paradoxus S110]
          Length = 285

 Score = 46.5 bits (109), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L  HS  S  +G L+   +  + AA+     A+TD + +  
Sbjct: 9  LHCHSVVS--DGTLTPEELAARAAANGVELWALTDHDEVGG 47


>gi|284047274|ref|YP_003397614.1| PHP domain protein [Conexibacter woesei DSM 14684]
 gi|283951495|gb|ADB54239.1| PHP domain protein [Conexibacter woesei DSM 14684]
          Length = 592

 Score = 46.5 bits (109), Expect = 0.026,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H++ S  +G   +  + +   A     +AITD 
Sbjct: 353 LHSHTTAS--DGRNEIEEMAEAAQALGYEYLAITDH 386


>gi|162457066|ref|YP_001619433.1| DNA polymerase lambda [Sorangium cellulosum 'So ce 56']
 gi|161167648|emb|CAN98953.1| DNA polymerase lambda [Sorangium cellulosum 'So ce 56']
          Length = 589

 Score = 46.5 bits (109), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 8/65 (12%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+ YS  +G  ++  +  +  A     + ITD +        +  A   G+  +    
Sbjct: 360 HCHTVYS--DGKNTIEEMALEAEAMGMKYLTITDHS------PAAHYANGVGLDRLKQQW 411

Query: 75  LDIDM 79
            +I  
Sbjct: 412 DEIAR 416


>gi|291165659|gb|EFE27708.1| PHP domain-containing protein [Filifactor alocis ATCC 35896]
          Length = 273

 Score = 46.5 bits (109), Expect = 0.027,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 84/246 (34%), Gaps = 39/246 (15%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H++ S  +G+ S+  I+ K   +    IAIT+ ++L    E        GIQ +   
Sbjct: 7   LHMHTTIS--DGSDSIQTIVQKCKQNGLTHIAITNHDDLDGYEEIQYYTENLGIQTVKSL 64

Query: 74  QLDIDMQDNLKMTN------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD---- 123
           ++     +     +      Q + P   +   +L        +++  L +  Y ++    
Sbjct: 65  EITTVDSETGTKAHLLGYRIQDEMPIRRLTDAMLQRRHNNALEQIKRLQNEGYDINVEEL 124

Query: 124 -QGKQSVRICLSWLQEIGTEGL---IMLT--------GGSSGPIDRAFFFNSSQVAEKRL 171
            Q    +    + +Q +  +G+   I  T        G              + VA K+ 
Sbjct: 125 KQNVYKIIYKQNLIQYLVDKGIADGIYGTFYQNYFSKGKLCDIRPTDIELRDAIVAIKKA 184

Query: 172 LTFK----KLFGDRLYV-----NL------QRHRGYDRYRESQVVQLAYTHELPLVATNN 216
             F         +  ++      L       RH   D   + ++++L+  + L L   ++
Sbjct: 185 GGFAVLAHPAQQNNYHLLPMLCELGLDGIEYRHPSNDENAKQKILELSKQYNLFLTGGSD 244

Query: 217 SLFLSE 222
               + 
Sbjct: 245 YHGTNN 250


>gi|168183666|ref|ZP_02618330.1| PHP domain protein [Clostridium botulinum Bf]
 gi|237797045|ref|YP_002864597.1| PHP domain-containing protein [Clostridium botulinum Ba4 str.
          657]
 gi|182673262|gb|EDT85223.1| PHP domain protein [Clostridium botulinum Bf]
 gi|229262814|gb|ACQ53847.1| PHP domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 225

 Score = 46.1 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 15 QVH-SSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +H S YS L+  +SL  I+ +        + ITD 
Sbjct: 6  HIHESKYS-LDSEISLEQIVKRAKEIGLNGVCITDH 40


>gi|187477858|ref|YP_785882.1| hypothetical protein BAV1360 [Bordetella avium 197N]
 gi|115422444|emb|CAJ48969.1| putative exported protein [Bordetella avium 197N]
          Length = 129

 Score = 46.1 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
           L  +KGVG  +A  I+ E     PF SL+D   RV  + +  R +     AG 
Sbjct: 32  LRELKGVGPRSAELIVRERERGGPFLSLQDLSERV--RGIGERKIAGFAEAGL 82


>gi|114566632|ref|YP_753786.1| DNA-dependent DNA polymerase family X protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337567|gb|ABI68415.1| DNA-dependent DNA polymerase family X [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 557

 Score = 46.1 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +GA  + +++          +AIT+ 
Sbjct: 326 LHTHSRWS--DGAHDIEDMVQAAKDSGYSYLAITEH 359


>gi|310820750|ref|YP_003953108.1| hypothetical protein STAUR_3491 [Stigmatella aurantiaca DW4/3-1]
 gi|309393822|gb|ADO71281.1| conserved uncharacterized protein [Stigmatella aurantiaca
          DW4/3-1]
          Length = 272

 Score = 46.1 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L  H++ S  +G  S   +L   A+     +A+TD + +   
Sbjct: 4  LHSHTTAS--DGQHSPEELLALAASAGVTVLAVTDHDTVAGL 43


>gi|297619875|ref|YP_003707980.1| PHP domain protein [Methanococcus voltae A3]
 gi|297378852|gb|ADI37007.1| PHP domain protein [Methanococcus voltae A3]
          Length = 221

 Score = 46.1 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
            H+ YS  +G L  + ++ +  A +   IA+TD  
Sbjct: 6  HAHTLYS--DGELLPSELIRRAIALKHKTIALTDHG 39


>gi|325663090|ref|ZP_08151540.1| hypothetical protein HMPREF0490_02280 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|325470544|gb|EGC73774.1| hypothetical protein HMPREF0490_02280 [Lachnospiraceae bacterium
          4_1_37FAA]
          Length = 219

 Score = 46.1 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 11 FVHLQVHSS-YSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
          F+ L +H   YS  +  L L  I++        A+ ITD +++    E++ +       P
Sbjct: 2  FIDLHMHECTYS-KDSHLKLEEIVELAKKRGLGAVCITDHDDM-GLKEYAAEYSEKTGFP 59

Query: 70 IIGCQLDIDMQDNL 83
          I        +Q ++
Sbjct: 60 IFVGIEFFSLQGDI 73


>gi|268324575|emb|CBH38163.1| conserved hypothetical protein containing PHP domain [uncultured
          archaeon]
          Length = 306

 Score = 46.1 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            H+++S  +    + + L          +AITD N +   +E  +
Sbjct: 43 HYHTNHS--DSPTRVKDALKLAKQKGF-GLAITDHNQISGVIEAYE 85


>gi|238019358|ref|ZP_04599784.1| hypothetical protein VEIDISOL_01222 [Veillonella dispar ATCC
          17748]
 gi|237864057|gb|EEP65347.1| hypothetical protein VEIDISOL_01222 [Veillonella dispar ATCC
          17748]
          Length = 275

 Score = 46.1 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
          V   +HS YS  +G  S   +L      +   +A+TD + +   ++  + A         
Sbjct: 3  VDFHMHSIYS--DGVKSPEELLRLALECKLSMMALTDHDEIDG-IKALRAAQKQLDPEKT 59

Query: 67 IQPIIGCQLDIDMQDN 82
          I+ I GC+   D +D 
Sbjct: 60 IKIINGCEFSADYKDK 75


>gi|258652375|ref|YP_003201531.1| PHP domain-containing protein [Nakamurella multipartita DSM 44233]
 gi|258555600|gb|ACV78542.1| PHP domain protein [Nakamurella multipartita DSM 44233]
          Length = 287

 Score = 46.1 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 75/256 (29%), Gaps = 52/256 (20%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---AL-------------E 57
           L  HS+ S  +G  +   ++   AA     +AITD +N      AL             E
Sbjct: 5   LHAHSTAS--DGTDTPAELMLAAAAAGLDVVAITDHDNTMGWAPALAARPAGLTVIRGAE 62

Query: 58  FSQKACAAGIQP-IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA---------- 106
           FS  A A G +  +       D +    +  Q +     +   + +V             
Sbjct: 63  FSTTAHADGHRVSVHLLGYLFDPEHRAIVDEQARLRQERLHRGMAIVERMVAAGVPITAD 122

Query: 107 ----------EGYQRLIELVSRMYLLD----------QGKQSVRICLSWLQEIGTEGLIM 146
                      G   +   +    +++           G+    +  +        G+I+
Sbjct: 123 QVMEIAAGAPVGRPHIGRALVDAGVVESVDQAFAMHLSGRGPYYVPKADTDLPTAIGMIV 182

Query: 147 LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYT 206
             GG S             +    L     L    L V    H  +DR   +++  +A  
Sbjct: 183 AAGGVSVIAHPRGRGERRALTADYLSELADLGLGGLEV---DHPDHDRPERAELRAIADR 239

Query: 207 HELPLVATNNSLFLSE 222
             L    +++    ++
Sbjct: 240 LGLLRTGSSDYHGTNK 255


>gi|86742505|ref|YP_482905.1| PHP-like protein [Frankia sp. CcI3]
 gi|86569367|gb|ABD13176.1| PHP-like [Frankia sp. CcI3]
          Length = 289

 Score = 46.1 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  HS+ S  +G  S  N++   A      +A+TD + 
Sbjct: 8  LHTHSTAS--DGLESPENLVRLAAGQGLSILALTDHDT 43


>gi|27467754|ref|NP_764391.1| hypothetical protein SE0836 [Staphylococcus epidermidis ATCC 12228]
 gi|293366875|ref|ZP_06613551.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|27315298|gb|AAO04433.1|AE016746_223 DNA-dependent DNA polymerase beta chain [Staphylococcus epidermidis
           ATCC 12228]
 gi|291319176|gb|EFE59546.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329734426|gb|EGG70739.1| PHP domain protein [Staphylococcus epidermidis VCU045]
 gi|329736264|gb|EGG72536.1| PHP domain protein [Staphylococcus epidermidis VCU028]
          Length = 569

 Score = 46.1 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++YS  +GA S+  +++         + ITD 
Sbjct: 336 LHMHTTYS--DGAFSIKEMIEANIEKGYEFMVITDH 369


>gi|33861437|ref|NP_892998.1| hypothetical protein PMM0880 [Prochlorococcus marinus subsp.
          pastoris str. CCMP1986]
 gi|33634014|emb|CAE19339.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
          pastoris str. CCMP1986]
          Length = 215

 Score = 46.1 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          E  P  V+   H+ +S  +G+     +LD+   ++   I+ITD + +
Sbjct: 16 ESCPGLVNFHCHTKFS--DGSFDPEQLLDQAFINKIKFISITDHHTV 60


>gi|329939620|ref|ZP_08288921.1| PHP domain-containing protein [Streptomyces griseoaurantiacus
          M045]
 gi|329301190|gb|EGG45085.1| PHP domain-containing protein [Streptomyces griseoaurantiacus
          M045]
          Length = 285

 Score = 46.1 bits (108), Expect = 0.029,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          L  HS+ S  +G  +   ++   AA     +A+TD +      E    
Sbjct: 5  LHTHSTAS--DGTDTPAELVRNAAAAGLDVVALTDHDTTRGHAEALAA 50


>gi|284045752|ref|YP_003396092.1| PHP domain protein [Conexibacter woesei DSM 14684]
 gi|283949973|gb|ADB52717.1| PHP domain protein [Conexibacter woesei DSM 14684]
          Length = 393

 Score = 46.1 bits (108), Expect = 0.029,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
           VH+++S  +G  ++  +L         A+ +TD + L 
Sbjct: 15 HVHTTFS--DGTATVPELLAAARGSGADAVLLTDHDTLA 51


>gi|313897265|ref|ZP_07830809.1| PHP domain protein [Clostridium sp. HGF2]
 gi|312957986|gb|EFR39610.1| PHP domain protein [Clostridium sp. HGF2]
          Length = 295

 Score = 46.1 bits (108), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS YS  +G      +L    A     +AI D N++  +    +     GI  I   
Sbjct: 6  LHMHSKYSD-DGQYEPIELLKMCKAAGLDMMAIADHNSVRGSRIALRHQQEYGITCIPAI 64

Query: 74 QLDIDMQD 81
          ++D   QD
Sbjct: 65 EIDAVSQD 72


>gi|218516210|ref|ZP_03513050.1| DNA polymerase III protein, alpha subunit [Rhizobium etli 8C-3]
          Length = 37

 Score = 46.1 bits (108), Expect = 0.029,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 19/37 (51%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQ 41
          ++   +F  +   +++S LEGA S   ++ + A  + 
Sbjct: 1  MKGERAFFEIGARTNFSFLEGASSPEEMVLQAAYLRL 37


>gi|169842449|ref|ZP_02875554.1| DNA polymerase III, alpha subunit [candidate division TM7
           single-cell isolate TM7a]
          Length = 72

 Score = 46.1 bits (108), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIF-SDLPEALENTVE 276
           +LS  D +AH++L+ V   + +S + R  +   + ++ + ++++  +    P A+ NT  
Sbjct: 1   YLSHSDQDAHEILLCVGTGSYLSDEKRMSLKDFELHVTDPADIIERWNKTNPRAVANTKN 60

Query: 277 IARRCSFILQVH 288
           IA RC+  +++ 
Sbjct: 61  IADRCNLEIELG 72


>gi|282162751|ref|YP_003355136.1| family X DNA polymerase [Methanocella paludicola SANAE]
 gi|282155065|dbj|BAI60153.1| family X DNA polymerase [Methanocella paludicola SANAE]
          Length = 568

 Score = 46.1 bits (108), Expect = 0.029,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS +S  +GA ++ +I     A     +AI D 
Sbjct: 336 LHVHSDWS--DGANTIQDIAIAARAMGYEYVAICDH 369


>gi|251810591|ref|ZP_04825064.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|251805751|gb|EES58408.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus
           epidermidis BCM-HMP0060]
          Length = 569

 Score = 46.1 bits (108), Expect = 0.029,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++YS  +GA S+  +++         + ITD 
Sbjct: 336 LHMHTTYS--DGAFSIKEMIEANIEKGYEFMVITDH 369


>gi|323141626|ref|ZP_08076508.1| PHP domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322413891|gb|EFY04728.1| PHP domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 256

 Score = 46.1 bits (108), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 14 LQVHSSYSLLEGALSLN----NILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
          L VH+   LL     +     +I+ + A     A+AITD N   +     + A   G++ 
Sbjct: 8  LHVHT---LLSPCAEVEMTPHHIVMRAAEYGIGAVAITDHNASANVQAALEAAQRYGVKV 64

Query: 70 IIGC 73
            G 
Sbjct: 65 FPGM 68


>gi|282876409|ref|ZP_06285276.1| PHP domain protein [Staphylococcus epidermidis SK135]
 gi|281295434|gb|EFA87961.1| PHP domain protein [Staphylococcus epidermidis SK135]
          Length = 569

 Score = 46.1 bits (108), Expect = 0.030,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++YS  +GA S+  +++         + ITD 
Sbjct: 336 LHMHTTYS--DGAFSIKEMIEANIEKGYEFMVITDH 369


>gi|114562607|ref|YP_750120.1| phosphotransferase domain-containing protein [Shewanella
          frigidimarina NCIMB 400]
 gi|114333900|gb|ABI71282.1| PHP C-terminal domain protein [Shewanella frigidimarina NCIMB
          400]
          Length = 286

 Score = 46.1 bits (108), Expect = 0.030,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          L  H++ S  +G L+   +L +         AITD + +    E    
Sbjct: 10 LHSHTTAS--DGQLTPTELLTRAIEKGVEMFAITDHDTVGGLAEAHLA 55


>gi|297192244|ref|ZP_06909642.1| PHP domain-containing protein [Streptomyces pristinaespiralis
          ATCC 25486]
 gi|197719778|gb|EDY63686.1| PHP domain-containing protein [Streptomyces pristinaespiralis
          ATCC 25486]
          Length = 287

 Score = 46.1 bits (108), Expect = 0.030,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  HS+ S  +G  +   ++   AA     +A+TD + 
Sbjct: 5  LHTHSTAS--DGTDTPAELVRHAAAAGLDVVALTDHDT 40


>gi|296129747|ref|YP_003636997.1| PHP domain protein [Cellulomonas flavigena DSM 20109]
 gi|296021562|gb|ADG74798.1| PHP domain protein [Cellulomonas flavigena DSM 20109]
          Length = 347

 Score = 46.1 bits (108), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 6/91 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT----NNLFSALEFSQKACAAGIQP 69
           L  H+  S  +GA  +  ++       +  +A+TD                +A  A +  
Sbjct: 112 LHSHTEAS--DGAAPVQEMVLTALDLGRDYLAVTDHSPRLTVAHGLSAARLRAQLADLAA 169

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           +       D+   +++           P ++
Sbjct: 170 LRPALAPFDVLSGIEVDILDDGSLDQEPDLL 200


>gi|124023196|ref|YP_001017503.1| metal-dependent phosphoesterase [Prochlorococcus marinus str. MIT
          9303]
 gi|123963482|gb|ABM78238.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Prochlorococcus marinus str. MIT 9303]
          Length = 218

 Score = 46.1 bits (108), Expect = 0.030,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          E  P+ ++   H+  S  +G+L    ++ + +      IA+TD ++
Sbjct: 18 ESCPNTMNFHCHTICS--DGSLEPELLIAQASERGLQHIAVTDHHS 61


>gi|320101815|ref|YP_004177406.1| Helix-hairpin-helix DNA-binding class 1 [Isosphaera pallida ATCC
           43644]
 gi|319749097|gb|ADV60857.1| Helix-hairpin-helix DNA-binding class 1 [Isosphaera pallida ATCC
           43644]
          Length = 214

 Score = 46.1 bits (108), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 809 ARQFNIQIMPPS--VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
           A+  + +  PP   +N   ++           L  + G+G   A+ I+      PF SLE
Sbjct: 121 AKAEHKEESPPETAINRLDLN-----QANAIELQGLPGIGPVLAQRILAERVRGPFQSLE 175

Query: 867 DFCSRVDSKKLNRRVLES 884
           D   RV  + +  R +E 
Sbjct: 176 DLAERV--RGIGPRTVER 191


>gi|257469629|ref|ZP_05633721.1| HisJ family histidinol phosphate phosphatase [Fusobacterium
          ulcerans ATCC 49185]
 gi|317063865|ref|ZP_07928350.1| histidinol phosphate phosphatase HisJ family [Fusobacterium
          ulcerans ATCC 49185]
 gi|313689541|gb|EFS26376.1| histidinol phosphate phosphatase HisJ family [Fusobacterium
          ulcerans ATCC 49185]
          Length = 270

 Score = 46.1 bits (108), Expect = 0.031,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           VHS +S  +    +  I+ K  +     IA+TD 
Sbjct: 9  HVHSEFS-GDSTQDMEEIIQKAISLGLQEIALTDH 42


>gi|123968514|ref|YP_001009372.1| metal-dependent phosphoesterase [Prochlorococcus marinus str.
          AS9601]
 gi|123198624|gb|ABM70265.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Prochlorococcus marinus str. AS9601]
          Length = 215

 Score = 46.1 bits (108), Expect = 0.031,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             P  ++   H+ +S  +G+L    +L++   +    ++ITD +     ++  +     
Sbjct: 16 NSCPKNINFHCHTKFS--DGSLEPYELLEQAYKNNLKFLSITDHHT----IKAHEYINKN 69

Query: 66 GI 67
           I
Sbjct: 70 NI 71


>gi|312141974|ref|YP_004009310.1| DNA polymerase [Rhodococcus equi 103S]
 gi|311891313|emb|CBH50634.1| putative DNA polymerase [Rhodococcus equi 103S]
          Length = 341

 Score = 46.1 bits (108), Expect = 0.032,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS +S  +G   ++ ++   A       A+TD 
Sbjct: 104 LHVHSDWS--DGGSPIDEMMRAAATIGHEYCALTDH 137


>gi|224826311|ref|ZP_03699413.1| PHP domain protein [Lutiella nitroferrum 2002]
 gi|224601412|gb|EEG07593.1| PHP  domain protein [Lutiella nitroferrum 2002]
          Length = 284

 Score = 46.1 bits (108), Expect = 0.032,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 72/250 (28%), Gaps = 50/250 (20%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------------FSA--LEFS 59
           L  HS +S  +GALS   ++ + A      +A+TD +                   L   
Sbjct: 6   LHFHSLFS--DGALSPAEVIRRGAERGATLLALTDHDCTAGLAEAAATARNCGVSFLNGV 63

Query: 60  QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA---------EGYQ 110
           + + + G   +    L ID   +             +     +  +          EG  
Sbjct: 64  EISVSWGKHTVHIVGLGIDPDHDALAAGLQGIRDGRINRARAMAESLAKVGIEGAFEGAS 123

Query: 111 RLI-------------ELVSRMYLLDQG---------KQSVRICLSWLQEIGTEGLIMLT 148
            L               LVS  ++ D            +   +   W       G I   
Sbjct: 124 ALCDNLEMIGRTHVARYLVSSGHVKDVRSVFRKYLTPGKPGYVPHEWASLADAVGWICSA 183

Query: 149 GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
           GG +       +     + E+ +  FK   G+ + V    H   D     +   +A  ++
Sbjct: 184 GGIAVIAHPGRYDMGRTLTERLIFDFKDAGGEAIEVASGSHSLDD---LHKYALIAQRYD 240

Query: 209 LPLVATNNSL 218
           L   A ++  
Sbjct: 241 LLASAGSDFH 250


>gi|87124472|ref|ZP_01080321.1| hypothetical protein RS9917_12700 [Synechococcus sp. RS9917]
 gi|86168044|gb|EAQ69302.1| hypothetical protein RS9917_12700 [Synechococcus sp. RS9917]
          Length = 218

 Score = 46.1 bits (108), Expect = 0.032,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE 57
          E  P+ ++   H+  S  +G+LS + ++ +        +A+TD ++  +A  
Sbjct: 18 ESCPAALNFHCHTLCS--DGSLSPDALIRQARDQGLQHLAVTDHHS-AAAFR 66


>gi|300312578|ref|YP_003776670.1| PHP family metal-dependent phosphoesterase [Herbaspirillum
           seropedicae SmR1]
 gi|300075363|gb|ADJ64762.1| PHP family metal-dependent phosphoesterase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 282

 Score = 46.1 bits (108), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 5/132 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L    +  +  A+     A+TD + +         A A G+  + G 
Sbjct: 10  LHCHSNVS--DGLLPPEQVAARAKANGVGVWALTDHDEIDGVARARAAAQALGMVHVGGV 67

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++ +    +       +        +  L +T  G +R    +     L+Q         
Sbjct: 68  EISVTWAGHTVHIVGLQIDETNPALVQGLAATRNGRERRAREI--AAQLEQ-HGVAGAYE 124

Query: 134 SWLQEIGTEGLI 145
             L+ +G   LI
Sbjct: 125 GALKHVGNPDLI 136


>gi|55377529|ref|YP_135379.1| DNA polymerase IV [Haloarcula marismortui ATCC 43049]
 gi|55230254|gb|AAV45673.1| DNA polymerase IV [Haloarcula marismortui ATCC 43049]
          Length = 578

 Score = 46.1 bits (108), Expect = 0.033,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             H+++S  +G+ S+  +++  AA     +A+TD 
Sbjct: 351 HTHTNWS--DGSNSITEMVEGAAAFGHDYLAVTDH 383


>gi|328912883|gb|AEB64479.1| DNA polymerase (family X) [Bacillus amyloliquefaciens LL3]
          Length = 570

 Score = 46.1 bits (108), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +   A     +AITD 
Sbjct: 338 LHMHSAWS--DGAFSIREMAEACMAKGYQYMAITDH 371


>gi|309775130|ref|ZP_07670142.1| putative PHP domain protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917085|gb|EFP62813.1| putative PHP domain protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 296

 Score = 46.1 bits (108), Expect = 0.034,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 84/270 (31%), Gaps = 38/270 (14%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS +S+ +G      ++          +A+ D N++             G +  +  
Sbjct: 4   LHLHSKWSI-DGEYECTQLIQIAKKAGLRTVALCDHNSMQGI----DTMREEGNRHGVHV 58

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
              I+              +       +       +Q L E ++ +      K++ R  L
Sbjct: 59  IAAIEFDSLFHGYETHIIGYGLDYHAPV-------FQNLHEEINALEFAAFRKKAQR--L 109

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA-EKRLLTFKKLFGD---------RLY 183
             L ++      +L    +    +  +    Q+A +K +   +  F D           Y
Sbjct: 110 QELYQVVMPLEYLLHRCETENPFQVIYGTFLQLAQQKHIQELRPYFTDGEKAANAVVGFY 169

Query: 184 VNLQRHR----GYDRYRESQVV--QLAYTHELPLVATNNSLFLSEE---DYEAHDVLMAV 234
            ++  +         Y E+Q V  ++     + ++A     F   E   D   HD +  +
Sbjct: 170 WDVCSYGKKAFVPVPYPEAQAVIDRIHAYGGIAVLAHPGVAFYHREALLDELYHDGIDGI 229

Query: 235 AHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
              T    +         + K  ++   +F
Sbjct: 230 EVFTTYHDEKER-----QFFKTYAKKRKLF 254


>gi|218439846|ref|YP_002378175.1| PHP domain protein [Cyanothece sp. PCC 7424]
 gi|218172574|gb|ACK71307.1| PHP domain protein [Cyanothece sp. PCC 7424]
          Length = 230

 Score = 46.1 bits (108), Expect = 0.034,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          L   P   +  +H++ S  +G LS   ++++        +AITD ++        + A  
Sbjct: 26 LNSCPYHYNFHMHTTCS--DGKLSPVALIEQAVKIGLKGMAITDHHSTQG----YKIAQE 79


>gi|328554479|gb|AEB24971.1| hypothetical protein BAMTA208_14050 [Bacillus amyloliquefaciens
           TA208]
          Length = 570

 Score = 46.1 bits (108), Expect = 0.034,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +   A     +AITD 
Sbjct: 338 LHMHSAWS--DGAFSIREMAEACMAKGYQYMAITDH 371


>gi|308174556|ref|YP_003921261.1| YshC [Bacillus amyloliquefaciens DSM 7]
 gi|307607420|emb|CBI43791.1| YshC [Bacillus amyloliquefaciens DSM 7]
          Length = 582

 Score = 46.1 bits (108), Expect = 0.034,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +   A     +AITD 
Sbjct: 350 LHMHSAWS--DGAFSIREMAEACMAKGYQYMAITDH 383


>gi|266624868|ref|ZP_06117803.1| putative PHP domain protein [Clostridium hathewayi DSM 13479]
 gi|288863253|gb|EFC95551.1| putative PHP domain protein [Clostridium hathewayi DSM 13479]
          Length = 276

 Score = 46.1 bits (108), Expect = 0.035,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 47/165 (28%), Gaps = 21/165 (12%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +H+  S  +G   +  ++D    +   A+A+TD + L       Q+            +
Sbjct: 6   HMHTLCS--DGIYEVETVVDMAVNNGILAMAVTDHDTLAGIGRARQRCQG-------RVR 56

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
                +        G  P P    ++      E  + L  L+S        K+       
Sbjct: 57  YMTGTELTCAERPWGSLPVPQSIHLLGYGFD-ENDETLCALLSS------RKERTETVYR 109

Query: 135 WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            L E  T      +G      D      +       +   +K F 
Sbjct: 110 DLAEAVTA-----SGCPLRIPDVPKSCGNVLQLRDVMAHVRKTFP 149


>gi|220906345|ref|YP_002481656.1| PHP domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219862956|gb|ACL43295.1| PHP domain protein [Cyanothece sp. PCC 7425]
          Length = 228

 Score = 45.7 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          E  P   +  +H+ YS  +G L+   ++ +        +AITD + 
Sbjct: 25 ESCPYHYNFHLHTIYS--DGRLAPLELMQQAIDHGLQGLAITDHHT 68


>gi|238026543|ref|YP_002910774.1| hypothetical protein bglu_1g08870 [Burkholderia glumae BGR1]
 gi|237875737|gb|ACR28070.1| Hypothetical protein bglu_1g08870 [Burkholderia glumae BGR1]
          Length = 107

 Score = 45.7 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 11/64 (17%)

Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874
                VN    D          +L  IKG+G   A+ I++   A  P+    D   RV  
Sbjct: 19  WAAVDVNQANSD----------ALRGIKGIGVAKAQAIVDERNAHGPYKDAADLARRVKG 68

Query: 875 KKLN 878
               
Sbjct: 69  IGPK 72


>gi|331086697|ref|ZP_08335774.1| hypothetical protein HMPREF0987_02077 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330409863|gb|EGG89298.1| hypothetical protein HMPREF0987_02077 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 219

 Score = 45.7 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 11 FVHLQVHSS-YSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          F+ L +H   YS  +  L L  I++        A+ ITD +++
Sbjct: 2  FIDLHMHECTYS-KDSHLKLEEIVELAKKRGLGAVCITDHDDM 43


>gi|325183698|emb|CCA18157.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 571

 Score = 45.7 bits (107), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +HS+ S  +G L  ++++ + A +    +++TD + +    E  Q A   G+
Sbjct: 36 HMHSTCS--DGKLRPSHVIREAAGNGVTYMSLTDHDTMAGTNEALQTAQQLGV 86


>gi|88602519|ref|YP_502697.1| PHP-like protein [Methanospirillum hungatei JF-1]
 gi|88187981|gb|ABD40978.1| PHP-like protein [Methanospirillum hungatei JF-1]
          Length = 306

 Score = 45.7 bits (107), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 15/94 (15%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS------------ 59
           V + +H+++S  +G   ++++L          +AITD N +  +L+              
Sbjct: 28  VDMHLHTNHS--DGMTKISDLLTYAKKRNI-GVAITDHNEISGSLDALSHSSDVLVIPGI 84

Query: 60  QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPF 93
           +     G   +       DM+D  K+ +Q +  +
Sbjct: 85  ELETEEGPHLLFYFYSSGDMEDFFKIFSQKRVEY 118


>gi|298674967|ref|YP_003726717.1| PHP domain-containing protein [Methanohalobium evestigatum Z-7303]
 gi|298287955|gb|ADI73921.1| PHP domain protein [Methanohalobium evestigatum Z-7303]
          Length = 573

 Score = 45.7 bits (107), Expect = 0.037,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 92/278 (33%), Gaps = 55/278 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS++S  +G  ++  I D   +     +AI D +          +A A+G+      
Sbjct: 341 LHIHSNWS--DGKSTIQQIADNARSLGYEYVAICDHS--------KSRANASGLSEGQLL 390

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS---TAEGYQRLIELVSRMYL---LDQGKQ 127
           +   +++      +  +    T   I    S    +   +++  +++ ++     D+   
Sbjct: 391 RRMDEIEKINSRYDDFRILAGTECDIKANASLDYNSNILEKMDIVIAAIHTGFDEDKKTI 450

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
           + RI  +   E     L   TG   G   RA +        +      K+        L+
Sbjct: 451 TKRIVRALENEYVNV-LAHPTGRRLGE--RAEYDVDMDKLMETAKRNNKI--------LE 499

Query: 188 RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            +    R   + +  + A    +PLV   ++          HD+   +     V+++   
Sbjct: 500 INGSPSRLDLNDINAKTAKEMGIPLVINTDAH-------WTHDMSRNMKTGVNVARRGWL 552

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
                                P+ + NT  +   CSF+
Sbjct: 553 E--------------------PKDVVNTQNLDDFCSFM 570


>gi|323526160|ref|YP_004228313.1| Helix-hairpin-helix DNA-binding class 1 [Burkholderia sp. CCGE1001]
 gi|323383162|gb|ADX55253.1| Helix-hairpin-helix DNA-binding class 1 [Burkholderia sp. CCGE1001]
          Length = 201

 Score = 45.7 bits (107), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   A+ I+E    + PF + +D  +RV      
Sbjct: 33  ALESVKGIGPAHAKAIIEERTKNGPFKNADDLAARVKGIGNK 74


>gi|149371919|ref|ZP_01891238.1| lysyl-tRNA synthetase [unidentified eubacterium SCB49]
 gi|149355059|gb|EDM43620.1| lysyl-tRNA synthetase [unidentified eubacterium SCB49]
          Length = 563

 Score = 45.7 bits (107), Expect = 0.037,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 73/194 (37%), Gaps = 14/194 (7%)

Query: 228 HDV-LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
           H++   A      ++   +     D   K+  E+ +   D+  A++NT+   +    I  
Sbjct: 310 HEIDFKAPYARVTMADSIKHFTGFDITGKSEDELRAAAKDMGIAVDNTMGKGKLIDEIFG 369

Query: 287 ---VHAPILPRFI---EKECDDIQKEEEN--ELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                  I P FI    KE   + KE  +  EL  +    +  +    A ++     D R
Sbjct: 370 EKCEGNYIQPTFITDYPKEMSPLCKEHRDNPELTERFELMVCGKEIANAYSELNDPIDQR 429

Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
           +R + +L +  +        I  DF++ A +  +P   G G G   +  Y       +P 
Sbjct: 430 ERFEAQLKLAEKGDDEATAFIDHDFLR-ALEYGMPPTSGMGIGMDRLIMYLTN----NPS 484

Query: 399 RFSLLFERFLNPDR 412
              +LF   + P++
Sbjct: 485 IQEVLFFPQMRPEK 498


>gi|256828523|ref|YP_003157251.1| PHP domain protein [Desulfomicrobium baculatum DSM 4028]
 gi|256577699|gb|ACU88835.1| PHP domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 290

 Score = 45.7 bits (107), Expect = 0.038,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 81/214 (37%), Gaps = 23/214 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++    A +  AIA+TD + +    E        G++ I GC
Sbjct: 6   LHTHSTAS--DGTLSPAELVAAAVAARLKAIALTDHDTVIGLPEACAAGRELGLEVIGGC 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY---LLDQGKQSVR 130
           +L ++ +   + +      +     + L  +    Y  L +L +      + +     V 
Sbjct: 64  ELSVEFE---RGSMHLLGLWLPQHPLRLQATLD--Y--LSDLRTARNENIIANLNAYGVD 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I  + L++       + TGGS G    A        A    + F+  F + L    + + 
Sbjct: 117 ITRAELED-------ITTGGSIGRPHFAQLLVQKGFA----VNFQDAFMNWLRPGTKGYA 165

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
             ++    Q ++L    +  ++  +      E+D
Sbjct: 166 PKEKLSPRQAIELLKDEQATVILAHPCTLKLEKD 199


>gi|76802131|ref|YP_327139.1| hypothetical protein NP2980A [Natronomonas pharaonis DSM 2160]
 gi|76557996|emb|CAI49581.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160]
          Length = 225

 Score = 45.7 bits (107), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          V L  HSS S  +G   +  +L++  A    A+A+TD +
Sbjct: 4  VELHAHSSLSY-DGRDPVELLLEQAEAVGLDALAVTDHD 41


>gi|269794445|ref|YP_003313900.1| ATP-dependent DNA helicase RecG [Sanguibacter keddieii DSM 10542]
 gi|269096630|gb|ACZ21066.1| ATP-dependent DNA helicase RecG [Sanguibacter keddieii DSM 10542]
          Length = 758

 Score = 45.7 bits (107), Expect = 0.039,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 14/100 (14%)

Query: 942  KFSVENSSVRFENEQRV------LGFYFSGHPLDVYKPILRKMGIKGY-EESVATIRGNN 994
             F+++    +   E+R       LG   +G   D+ +   R+    G   +    + G +
Sbjct: 6    PFTLDEPLTKV-FEKRTSNQLAKLGLTTTG---DLLRHYPRRYADPGAMSQLSTLVVGEH 61

Query: 995  IRLAAMVVS--KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + + A VVS   ++ ++R G  +     S+        FF
Sbjct: 62   VTVMAQVVSATVREMRSR-GGAMLQAVVSDGTDRLSLTFF 100


>gi|226330255|ref|ZP_03805773.1| hypothetical protein PROPEN_04168 [Proteus penneri ATCC 35198]
 gi|225201050|gb|EEG83404.1| hypothetical protein PROPEN_04168 [Proteus penneri ATCC 35198]
          Length = 91

 Score = 45.7 bits (107), Expect = 0.039,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          L  H++ S  +G LS   ++D+    Q   +AITD +   +    
Sbjct: 14 LHSHTTAS--DGELSPEELVDRAIERQINVLAITDHDTTAAIAPA 56


>gi|119962368|ref|YP_947284.1| hypothetical protein AAur_1516 [Arthrobacter aurescens TC1]
 gi|119949227|gb|ABM08138.1| putative DNA polymerase beta chain [Arthrobacter aurescens TC1]
          Length = 339

 Score = 45.7 bits (107), Expect = 0.039,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS++S  +G   +  ++       +  +A+TD 
Sbjct: 103 LHSHSNWS--DGGSPIEAMVAAARTLGREYLALTDH 136


>gi|325959848|ref|YP_004291314.1| PHP domain-containing protein [Methanobacterium sp. AL-21]
 gi|325331280|gb|ADZ10342.1| PHP domain protein [Methanobacterium sp. AL-21]
          Length = 221

 Score = 45.7 bits (107), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ-KACAAGIQPIIG 72
          L  HS +S  +G L  + I  +       A+AITD       ++ S  +     I+ +  
Sbjct: 7  LHTHSIFS--DGELLPSEIARRALVLNHSAVAITDH------VDASNIECVGNVIKAVTD 58

Query: 73 CQLDIDMQ 80
           + + D++
Sbjct: 59 IRDNWDIE 66


>gi|225175316|ref|ZP_03729311.1| PHP domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169068|gb|EEG77867.1| PHP domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 254

 Score = 45.7 bits (107), Expect = 0.039,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 65/214 (30%), Gaps = 18/214 (8%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN------NLFSALEFSQKACAAGIQ 68
             H+ YS   G  S+ + ++         +AI D         +     F +        
Sbjct: 8   HTHTRYS--HGKGSIKDNVEAAVKRGLSTLAIADHGPGHFFIGIGGVQAFYRMQKEVASL 65

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS----RMYLLDQ 124
                +L+I +     + +   T       +  L     GY +L+++ S    +    + 
Sbjct: 66  RRKYPKLEILLGVEANIVDTDGTIDVPTTMLRELDILLVGYHKLVKVKSFDGFKQMAQNF 125

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                    S L++I T+ ++        PID           +   L  +       ++
Sbjct: 126 LAGWTGRSSSRLRQINTDAIVA--AVKRYPIDIITHPGLQVDIDTVALA-RACHQQNTFL 182

Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSL 218
            +    G +       ++ A    +  V  +++ 
Sbjct: 183 EINSSYGEE---LDPFIKAAMPTGVRFVINSDAH 213


>gi|154686994|ref|YP_001422155.1| hypothetical protein RBAM_025660 [Bacillus amyloliquefaciens FZB42]
 gi|154352845|gb|ABS74924.1| YshC [Bacillus amyloliquefaciens FZB42]
          Length = 570

 Score = 45.7 bits (107), Expect = 0.039,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +   A     +AITD 
Sbjct: 338 LHMHSAWS--DGAFSIREMAEACMAKGYQYMAITDH 371


>gi|238788420|ref|ZP_04632213.1| hypothetical protein yfred0001_840 [Yersinia frederiksenii ATCC
          33641]
 gi|238723333|gb|EEQ14980.1| hypothetical protein yfred0001_840 [Yersinia frederiksenii ATCC
          33641]
          Length = 314

 Score = 45.7 bits (107), Expect = 0.040,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
          L  H++ S  +G+L+   ++ + A  +   +AITD +      E +
Sbjct: 34 LHSHTTAS--DGSLTPAALVIRAAQMRVGVLAITDHDTTAGLAEAA 77


>gi|120406629|ref|YP_956458.1| hypothetical protein Mvan_5687 [Mycobacterium vanbaalenii PYR-1]
 gi|119959447|gb|ABM16452.1| PHP C-terminal domain protein [Mycobacterium vanbaalenii PYR-1]
          Length = 335

 Score = 45.7 bits (107), Expect = 0.040,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS++S  +G+  +  ++    A      A+TD 
Sbjct: 100 LHVHSNWS--DGSAPIEEMMLAARAIGHEYCALTDH 133


>gi|156740853|ref|YP_001430982.1| phosphotransferase domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156232181|gb|ABU56964.1| PHP domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 285

 Score = 45.7 bits (107), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 36/123 (29%), Gaps = 6/123 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H+  +      +   + +  A      IA+TD N   +     +    AG +  I  
Sbjct: 4   LHIHTHATPHHATWTPEMLAEAAARAGLRVIAVTDHNTTATV----RATQEAGARIGIQV 59

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG--YQRLIELVSRMYLLDQGKQSVRI 131
              +++                +  +++     +    Q L   V      D      R+
Sbjct: 60  ISGVEIDSGFPAGRSDDLLPFKLWHVLVYGVDPDAPQLQALCRSVEARNRADAAALRDRL 119

Query: 132 CLS 134
             +
Sbjct: 120 MRA 122


>gi|52786737|ref|YP_092566.1| hypothetical protein BLi03006 [Bacillus licheniformis ATCC 14580]
 gi|163119581|ref|YP_080151.2| hypothetical protein BL00334 [Bacillus licheniformis ATCC 14580]
 gi|52349239|gb|AAU41873.1| YshC [Bacillus licheniformis ATCC 14580]
 gi|145903091|gb|AAU24513.2| putative DNA polymerase YshC [Bacillus licheniformis ATCC 14580]
          Length = 571

 Score = 45.7 bits (107), Expect = 0.040,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +   A     +AITD 
Sbjct: 338 LHMHSAWS--DGAFSIREMAEACMAKGYRYMAITDH 371


>gi|74025428|ref|XP_829280.1| kinesin [Trypanosoma brucei TREU927]
 gi|70834666|gb|EAN80168.1| kinesin, putative [Trypanosoma brucei]
 gi|261335249|emb|CBH18243.1| kinesin, putative [Trypanosoma brucei gambiense DAL972]
          Length = 916

 Score = 45.7 bits (107), Expect = 0.041,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 78/242 (32%), Gaps = 20/242 (8%)

Query: 106 AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
               + L  L +    L+  K+        L E+   G   +     G   +        
Sbjct: 488 ENNRKLLERLEAERDELEALKKQKETDSKRLAELDMGGQHSIGCDFDGSFSQENLLRDIA 547

Query: 166 VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
           + E+ +   K+   + ++         +  + +Q   L+    L     N    L   + 
Sbjct: 548 LKERHIQELKQRNEEAVW-------ALEDSKRNQEEVLSVKRRLEEDLANAVTKLESTEM 600

Query: 226 EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR-CSFI 284
           E              ++++R     +  L+   EM   +    E  E T+++ +R C+  
Sbjct: 601 EQQR---------KQAERNRLFALHEERLRKAEEMAETYRRRVE--EATLQLNQRQCNEE 649

Query: 285 L-QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
           L Q     +P   E+    +    E + R + +A   V+  +    +    +    RL  
Sbjct: 650 LIQQLQAQIPEMREELNRHVVAVREGQQREQKMAASYVQKVKKMKRQMRETEAQVSRLQV 709

Query: 344 EL 345
           EL
Sbjct: 710 EL 711


>gi|332035710|gb|EGI72198.1| conserved enzyme [Pseudoalteromonas haloplanktis ANT/505]
          Length = 284

 Score = 45.7 bits (107), Expect = 0.041,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H+++S  +G L++  +L +         AITD + + +     Q   A  + 
Sbjct: 6  LHSHTTHS--DGRLTVEELLHRAVDKNIDVFAITDHDTVAAIKPAQQFIEAENLP 58


>gi|297518504|ref|ZP_06936890.1| hypothetical protein EcolOP_12758 [Escherichia coli OP50]
          Length = 280

 Score = 45.7 bits (107), Expect = 0.042,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 76/253 (30%), Gaps = 51/253 (20%)

Query: 17  HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP------- 69
           H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G+         
Sbjct: 2   HTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIPGVE 59

Query: 70  ------------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
                             I    +   +    +  NQ             +    EG QR
Sbjct: 60  ISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQLIAERLEKAQIPGALEGAQR 119

Query: 112 LIE--LVSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLIMLTGG 150
           L +   V+R +                         ++  +   W        +I  +GG
Sbjct: 120 LAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVIHHSGG 179

Query: 151 SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELP 210
            +       +  S++  ++ +  F +  GD + V   +    +R   +Q+  LA  H L 
Sbjct: 180 KAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNER---TQLATLARQHHLW 236

Query: 211 LVATNNSLFLSEE 223
               ++       
Sbjct: 237 ASQGSDFHQPCPW 249


>gi|126658635|ref|ZP_01729781.1| PHP-like protein [Cyanothece sp. CCY0110]
 gi|126620072|gb|EAZ90795.1| PHP-like protein [Cyanothece sp. CCY0110]
          Length = 230

 Score = 45.7 bits (107), Expect = 0.042,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           +H+  S  +G L+   ++ +        +AITD +++  
Sbjct: 36 HMHTICS--DGQLTPEQLITQATQIGLKGLAITDHHSVEG 73


>gi|296134208|ref|YP_003641455.1| PHP domain protein [Thermincola sp. JR]
 gi|296032786|gb|ADG83554.1| PHP domain protein [Thermincola potens JR]
          Length = 243

 Score = 45.7 bits (107), Expect = 0.042,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 2/40 (5%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          F     H+ YS  +G  ++              + ITD  
Sbjct: 4  FADYHTHTVYS--DGGGTIEENARAAKEKGLEVLGITDHG 41


>gi|293401883|ref|ZP_06646024.1| putative PHP domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
 gi|291304835|gb|EFE46083.1| putative PHP domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
          Length = 297

 Score = 45.7 bits (107), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS YS  +G  +   +++K+   +   IA++D N      E  Q      I+ I   
Sbjct: 6  LHMHSLYSS-DGQFTCQELIEKVKEAKLSLIALSDHNTAQGVDEMMQLGKQNEIRVIPAI 64

Query: 74 QL 75
          + 
Sbjct: 65 EC 66


>gi|23099580|ref|NP_693046.1| hypothetical protein OB2125 [Oceanobacillus iheyensis HTE831]
 gi|22777810|dbj|BAC14081.1| DNA-dependent DNA polymerase beta chain [Oceanobacillus iheyensis
           HTE831]
          Length = 572

 Score = 45.7 bits (107), Expect = 0.042,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA SL  +++K+       + ITD 
Sbjct: 340 LHMHTTWS--DGAQSLEEMVNKVREKGYQFMGITDH 373


>gi|85813996|emb|CAG38674.1| putative DNA polymerase beta chain [Micromonospora echinospora]
          Length = 357

 Score = 45.7 bits (107), Expect = 0.042,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 63/242 (26%), Gaps = 26/242 (10%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPI 70
             HS +S  +G   +  +           + +TD      +          A     Q  
Sbjct: 106 HTHSDWS--DGGSPIEEMALAAVELGHEYLVLTDH-----SPRLKVARGLTADRLRRQLD 158

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
              QL+  + +  ++    +       S+       E   RL  +V  ++         R
Sbjct: 159 HVAQLNDALPEGFRVLTGIEVDILADGSL---DQDDELLARLDVVVGSVHS-GLNDDRAR 214

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDR--AFFFNSSQVAEK-RLLTFKKLFGDRLYVNLQ 187
           +    L  +    L +L   +   +    A        A + R         D ++    
Sbjct: 215 MTRRMLTAVANPHLDILGHCTGRMVASRPAGVRGPGDRAHRPRTRPESDFDADAVFAACA 274

Query: 188 RH--------RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            H        R   +    ++++ A           ++    + D++      A      
Sbjct: 275 EHGKAVEVNSRPERQDPPKRLIRRALEAGCVFAVNTDAHAPGQLDWQRFGCERAARCGVP 334

Query: 240 VS 241
             
Sbjct: 335 AD 336


>gi|322417835|ref|YP_004197058.1| PHP domain-containing protein [Geobacter sp. M18]
 gi|320124222|gb|ADW11782.1| PHP domain protein [Geobacter sp. M18]
          Length = 576

 Score = 45.7 bits (107), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS +S  +GA S+ ++ +         IA+TD 
Sbjct: 340 LHVHSKWS--DGAHSIADLAEAARQSGLSYIAVTDH 373


>gi|254303493|ref|ZP_04970851.1| possible PHP family metal-dependent phosphoesterase
          [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148323685|gb|EDK88935.1| possible PHP family metal-dependent phosphoesterase
          [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 270

 Score = 45.7 bits (107), Expect = 0.044,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           +H++ S  +G  + + I+          IAITD + L    E    A    I+
Sbjct: 6  HLHTTAS--DGQYTPSEIVYLAHKLGIEKIAITDHDTLNGLDEAICAASQYSIE 57


>gi|225390219|ref|ZP_03759943.1| hypothetical protein CLOSTASPAR_03969 [Clostridium asparagiforme
          DSM 15981]
 gi|225043730|gb|EEG53976.1| hypothetical protein CLOSTASPAR_03969 [Clostridium asparagiforme
          DSM 15981]
          Length = 297

 Score = 45.7 bits (107), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
          L  H+  S  +GA S+  +L +    +   ++ITD N + 
Sbjct: 4  LHTHTCCS--DGADSVETLLRRAEEQKLSVLSITDHNTVA 41


>gi|307730613|ref|YP_003907837.1| helix-hairpin-helix motif protein [Burkholderia sp. CCGE1003]
 gi|307585148|gb|ADN58546.1| helix-hairpin-helix motif protein [Burkholderia sp. CCGE1003]
          Length = 121

 Score = 45.7 bits (107), Expect = 0.044,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L  IKG+G   A+ I+E   A  PF    D   RV     +
Sbjct: 31  ALRGIKGIGPAKAKAILEERAAHGPFKDPADLSKRVKGMGGH 72


>gi|323526947|ref|YP_004229100.1| helix-hairpin-helix motif protein [Burkholderia sp. CCGE1001]
 gi|323383949|gb|ADX56040.1| helix-hairpin-helix motif protein [Burkholderia sp. CCGE1001]
          Length = 121

 Score = 45.7 bits (107), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L  IKG+G   A+ I+E   A  PF    D   RV     +
Sbjct: 31  ALRGIKGIGPAKAKAILEERAAHGPFKDPADLSKRVKGMGGH 72


>gi|218886428|ref|YP_002435749.1| hypothetical protein DvMF_1332 [Desulfovibrio vulgaris str.
          'Miyazaki F']
 gi|218757382|gb|ACL08281.1| PHP domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 219

 Score = 45.7 bits (107), Expect = 0.045,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L VH+ +S  + +++    +         A+A+TD 
Sbjct: 4  LHVHTCFS--DSSMTPATAVRFARLAGYRAVALTDH 37


>gi|257387176|ref|YP_003176949.1| PHP domain protein [Halomicrobium mukohataei DSM 12286]
 gi|257169483|gb|ACV47242.1| PHP domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 261

 Score = 45.7 bits (107), Expect = 0.045,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L VH+  S  +G LSL+ +          A+A+TD +
Sbjct: 6  LHVHTQRS--DGTLSLDEVPAAARRGGLDAVAVTDHD 40


>gi|206895366|ref|YP_002246803.1| DNA polymerase beta family [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737983|gb|ACI17061.1| DNA polymerase beta family [Coprothermobacter proteolyticus DSM
           5265]
          Length = 571

 Score = 45.7 bits (107), Expect = 0.045,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL 56
           L VHS++S  +G  ++  +  K        + I+D       +
Sbjct: 340 LHVHSTFS--DGTDTVETMARKAKEMGYEWLVISDHATGLGVV 380


>gi|28898728|ref|NP_798333.1| putative metal-dependent phosphoesterase YciV [Vibrio
          parahaemolyticus RIMD 2210633]
 gi|153839759|ref|ZP_01992426.1| PHP domain containing protein [Vibrio parahaemolyticus AQ3810]
 gi|260363730|ref|ZP_05776506.1| PHP domain protein [Vibrio parahaemolyticus K5030]
 gi|260877276|ref|ZP_05889631.1| PHP domain protein [Vibrio parahaemolyticus AN-5034]
 gi|260897777|ref|ZP_05906273.1| PHP domain protein [Vibrio parahaemolyticus Peru-466]
 gi|260903497|ref|ZP_05911892.1| PHP domain protein [Vibrio parahaemolyticus AQ4037]
 gi|28806946|dbj|BAC60217.1| putative metal-dependent phosphoesterase YciV [Vibrio
          parahaemolyticus RIMD 2210633]
 gi|149746726|gb|EDM57714.1| PHP domain containing protein [Vibrio parahaemolyticus AQ3810]
 gi|308087591|gb|EFO37286.1| PHP domain protein [Vibrio parahaemolyticus Peru-466]
 gi|308090281|gb|EFO39976.1| PHP domain protein [Vibrio parahaemolyticus AN-5034]
 gi|308106755|gb|EFO44295.1| PHP domain protein [Vibrio parahaemolyticus AQ4037]
 gi|308114910|gb|EFO52450.1| PHP domain protein [Vibrio parahaemolyticus K5030]
 gi|328474708|gb|EGF45513.1| putative metal-dependent phosphoesterase YciV [Vibrio
          parahaemolyticus 10329]
          Length = 285

 Score = 45.7 bits (107), Expect = 0.045,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKACAAGIQPII 71
          L  H++ S  +G L   +++D+        +AITD + +          +     I+ I 
Sbjct: 5  LHSHTTAS--DGRLEPKDLVDRALGFDIEVLAITDHDTVDGLARAKQYVEENDLPIKIIN 62


>gi|300741896|ref|ZP_07071917.1| PHP domain protein [Rothia dentocariosa M567]
 gi|300381081|gb|EFJ77643.1| PHP domain protein [Rothia dentocariosa M567]
          Length = 287

 Score = 45.7 bits (107), Expect = 0.046,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +G   L  ++  I        A+TD +      + ++ A   G+  + G 
Sbjct: 7  LHIHSAIS--DGTQPLTELIPLIRKAGLTGFALTDHDTACGWSQAAELAGEYGLDFLPGA 64

Query: 74 QLDIDMQDNLKMTNQ 88
          +         +   +
Sbjct: 65 EFSCRYTYRDEHGRK 79


>gi|186686498|ref|YP_001869694.1| phosphotransferase domain-containing protein [Nostoc punctiforme
          PCC 73102]
 gi|186468950|gb|ACC84751.1| PHP C-terminal domain protein [Nostoc punctiforme PCC 73102]
          Length = 228

 Score = 45.7 bits (107), Expect = 0.046,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 9  PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          P   +  +H+ +S  +G L  + ++++  A     +AITD + +       Q A A
Sbjct: 28 PRLFNFHMHTVHS--DGRLQPSGLMEQAIAIGLKGLAITDHHGIIG----YQAALA 77


>gi|170077174|ref|YP_001733812.1| PHP family metal-dependent phosphoesterase [Synechococcus sp. PCC
          7002]
 gi|169884843|gb|ACA98556.1| metal-dependent phosphoesterases (PHP family), putative
          [Synechococcus sp. PCC 7002]
          Length = 230

 Score = 45.7 bits (107), Expect = 0.046,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           +HS  S  +G L+   I+D+  A      AITD + +  
Sbjct: 36 HMHSVCS--DGQLTPTEIVDQAIAIGLKGFAITDHHTIHG 73


>gi|114794742|pdb|2I5H|A Chain A, Crystal Structure Of Af1531 From Archaeoglobus Fulgidus,
           Pfam Duf655
          Length = 205

 Score = 45.7 bits (107), Expect = 0.046,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           L  + GVG      I+E    +PF+S ED   RV   +   +++ S +
Sbjct: 134 LELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVKGIQRPEKLIVSRI 181


>gi|319652297|ref|ZP_08006414.1| hypothetical protein HMPREF1013_03027 [Bacillus sp. 2_A_57_CT2]
 gi|317395958|gb|EFV76679.1| hypothetical protein HMPREF1013_03027 [Bacillus sp. 2_A_57_CT2]
          Length = 288

 Score = 45.4 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  H++ S  +  LS++ +L+   A++   +AIT+ +      E  ++     ++ I 
Sbjct: 3  VELHCHTNIS--DCPLSIDEVLNLAIANEVSHLAITNHDTTKGLQEAIERGKRYRVEVIP 60

Query: 72 GCQLDIDMQDNLKMTN 87
          G ++     D  +  +
Sbjct: 61 GIEISAFDFDRARRVH 76


>gi|311111791|ref|YP_003983013.1| PHP domain-containing protein [Rothia dentocariosa ATCC 17931]
 gi|310943285|gb|ADP39579.1| PHP domain protein [Rothia dentocariosa ATCC 17931]
          Length = 287

 Score = 45.4 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +G   L  ++  I        A+TD +      + ++ A   G+  + G 
Sbjct: 7  LHIHSAIS--DGTQPLTELIPLIHEAGLTGFALTDHDTACGWSQAAELAGEYGLDFLPGA 64

Query: 74 QLDI 77
          +   
Sbjct: 65 EFSC 68


>gi|319647267|ref|ZP_08001489.1| YshC protein [Bacillus sp. BT1B_CT2]
 gi|317390614|gb|EFV71419.1| YshC protein [Bacillus sp. BT1B_CT2]
          Length = 413

 Score = 45.4 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +   A     +AITD 
Sbjct: 180 LHMHSAWS--DGAFSIREMAEACMAKGYRYMAITDH 213


>gi|119510545|ref|ZP_01629676.1| PHP-like protein [Nodularia spumigena CCY9414]
 gi|119464812|gb|EAW45718.1| PHP-like protein [Nodularia spumigena CCY9414]
          Length = 227

 Score = 45.4 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 10/53 (18%)

Query: 13 HLQ-VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          HL  VHS     +G L  + ++++  A     +AITD ++    ++  + A  
Sbjct: 34 HLHTVHS-----DGKLQPSTLMEQAIAIGLQGLAITDHHS----IKGYEAAQD 77


>gi|319779321|ref|YP_004130234.1| hypothetical protein TEQUI_1168 [Taylorella equigenitalis MCE9]
 gi|317109345|gb|ADU92091.1| hypothetical protein TEQUI_1168 [Taylorella equigenitalis MCE9]
          Length = 135

 Score = 45.4 bits (106), Expect = 0.048,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 839 LAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L +IKG+G   A  I+EA  +   F S  D   RV    L +  ++SL  AG L+  G  
Sbjct: 33  LDSIKGIGPKMATLIIEARKNGGNFKSYSDLAERVKGLGLKK--IKSLRIAG-LEIKGAV 89

Query: 898 RMQLLQSLD 906
              LL  ++
Sbjct: 90  DEDLLPQIE 98


>gi|260220848|emb|CBA28824.1| hypothetical protein Csp_A09070 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 80

 Score = 45.4 bits (106), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
           L  ++G+G ++   I++A A  PF S  DF +RV   K 
Sbjct: 19  LDGLRGLGPSSTARILQARAAGPFQSWADFMARVKGIKP 57


>gi|159035899|ref|YP_001535152.1| hypothetical protein Sare_0226 [Salinispora arenicola CNS-205]
 gi|157914734|gb|ABV96161.1| PHP domain protein [Salinispora arenicola CNS-205]
          Length = 356

 Score = 45.4 bits (106), Expect = 0.048,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             HS +S  +G  S+  +           + ITD 
Sbjct: 107 HTHSDWS--DGGSSIEEMALAAVELGHEYLVITDH 139


>gi|119944819|ref|YP_942499.1| phosphotransferase domain-containing protein [Psychromonas
           ingrahamii 37]
 gi|119863423|gb|ABM02900.1| PHP C-terminal domain protein [Psychromonas ingrahamii 37]
          Length = 291

 Score = 45.4 bits (106), Expect = 0.048,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 62/180 (34%), Gaps = 15/180 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+  S  +G L+   ++ + A  Q   +AITD + +    E  Q      ++  +  
Sbjct: 5   LHSHTKAS--DGQLTPTELVVRAANRQVNILAITDHDTVDGLAEAKQTIIDNKLKLTLIN 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +++         +          S         G   LI+L          +   R+  
Sbjct: 63  GIELTSNWLNHEIHVVGVNIDPAHS---------GLSDLIKLQKEKREARAVEMGARLAK 113

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
           + + ++  EG   L G   G I RA F     V      TF+K+F   L      +  +D
Sbjct: 114 AKIPDVY-EGAKALAG--EGAITRAHFA-RYLVEIGVAPTFQKVFDKYLSRGNTGYVPHD 169


>gi|121610828|ref|YP_998635.1| hypothetical protein Veis_3910 [Verminephrobacter eiseniae EF01-2]
 gi|121555468|gb|ABM59617.1| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2]
          Length = 130

 Score = 45.4 bits (106), Expect = 0.049,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
           L  IKG+G + +  I+E     PF   +DF  RV      
Sbjct: 31  LEGIKGIGPSLSGKIVEERKSGPFKDWDDFVRRVGGVGKK 70


>gi|224825434|ref|ZP_03698539.1| PHP domain protein [Lutiella nitroferrum 2002]
 gi|224602355|gb|EEG08533.1| PHP  domain protein [Lutiella nitroferrum 2002]
          Length = 573

 Score = 45.4 bits (106), Expect = 0.049,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS  S  +G  S+ ++     A     +AITD 
Sbjct: 342 LHTHSVAS--DGQNSIKDMALAAHALGLVYLAITDH 375


>gi|318041429|ref|ZP_07973385.1| metal-dependent phosphoesterase [Synechococcus sp. CB0101]
          Length = 216

 Score = 45.4 bits (106), Expect = 0.050,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
             P  ++   H+ +S  +G+L    +  +  A     +A+TD ++  
Sbjct: 16 NSCPGRLNFHCHTIHS--DGSLRPEQLGQQALAIGLEHLAVTDHHSTA 61


>gi|313901804|ref|ZP_07835227.1| PHP domain protein [Thermaerobacter subterraneus DSM 13965]
 gi|313467924|gb|EFR63415.1| PHP domain protein [Thermaerobacter subterraneus DSM 13965]
          Length = 288

 Score = 45.4 bits (106), Expect = 0.050,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 52/173 (30%), Gaps = 28/173 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++ S  +G ++    +      +   + ITD + L       + A  AG+  + G 
Sbjct: 10  LHTHTTAS--DGTVTPRERIRMAREAELEFVGITDHDTLAGLPAAREAAREAGVVLVPGV 67

Query: 74  QLDIDMQDNLKMTN----QGKTPFPTVPSIVLLVSTAEGY-QRLIELVS----------- 117
           +L  D+    +                P + LL        QRL  ++            
Sbjct: 68  ELSTDVDLGSRRVGVHILGYWVDEAAEPLVQLLARRRASREQRLARMLQRLAEAGIVLDE 127

Query: 118 ---RMYLLDQGKQSVRICLSWLQEIGTEGLIM------LTGGSSGPIDRAFFF 161
              R            +  + L E G    +       LT G  G + RA   
Sbjct: 128 ERIRAMAQGGAIGRPHVARA-LVEAGVVATVAEAFERYLTPGKPGYVPRAPLA 179


>gi|290969110|ref|ZP_06560640.1| PHP domain protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290780870|gb|EFD93468.1| PHP domain protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 271

 Score = 45.4 bits (106), Expect = 0.050,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 69/220 (31%), Gaps = 24/220 (10%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S  +G  +   ++ + A      +AITD + +        +A  +G     
Sbjct: 3   VDLHMHTTCS--DGVYTPQELIRRAAQANIRILAITDHDTV--------EAHVSGYTRSQ 52

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
             ++   ++ + +   +          +       +  Q      S+   +   +   R 
Sbjct: 53  EVEVIRAIEMSSRYGEEDVHILGYDIDVR-----NQALQSYCRDYSQRRKIRARRMFQR- 106

Query: 132 CLSW---LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
           CL     L     E L+       G + R        + +       ++F   L+     
Sbjct: 107 CLDLGYTLDAQAFEALLA----KKGSVGRPHIA-RLLIEKGYFTEVGEVFHAILHRGAPA 161

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
           +  Y+R   +  +QL +      V  +  L     +    
Sbjct: 162 YVPYERESIAACIQLIHQAGGMAVLAHPGLIADGLEAVLQ 201


>gi|261343644|ref|ZP_05971289.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Providencia rustigianii DSM 4541]
 gi|282568027|gb|EFB73562.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Providencia rustigianii DSM 4541]
          Length = 290

 Score = 45.4 bits (106), Expect = 0.050,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          L  H++ S  +G L+   ++++        ++ITD +     +E 
Sbjct: 14 LHSHTNAS--DGDLTPAELVERAIQMGVNILSITDHDTCDGLIEA 56


>gi|313900709|ref|ZP_07834202.1| PHP domain protein [Clostridium sp. HGF2]
 gi|312954771|gb|EFR36446.1| PHP domain protein [Clostridium sp. HGF2]
          Length = 294

 Score = 45.4 bits (106), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS YS  +G  +   ++          IA++D N      +  +   A GI+ I   
Sbjct: 6  LHMHSCYS-NDGEFTPQELIHMADEAHLTTIALSDHNTPKGIADMVRLGEAKGIRVIPAM 64

Query: 74 QLDIDMQD 81
          + D   ++
Sbjct: 65 EFDTLFEE 72


>gi|147678282|ref|YP_001212497.1| DNA polymerase IV, histidinol phosphatase and related hydrolases
           [Pelotomaculum thermopropionicum SI]
 gi|146274379|dbj|BAF60128.1| DNA polymerase IV, histidinol phosphatase and related hydrolases
           [Pelotomaculum thermopropionicum SI]
          Length = 567

 Score = 45.4 bits (106), Expect = 0.050,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +G  ++  +  +        IA+TD 
Sbjct: 336 LHIHTTWS--DGLGTVEQMAARAREKGYQYIAVTDH 369


>gi|319401543|gb|EFV89753.1| PHP domain protein [Staphylococcus epidermidis FRI909]
          Length = 569

 Score = 45.4 bits (106), Expect = 0.051,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++YS  +GA S+  +++   A     + ITD 
Sbjct: 336 LHMHTTYS--DGAFSIKEMIEANIAKGYEFMVITDH 369


>gi|238899276|ref|YP_002924959.1| hypothetical protein HDEF_2270 [Candidatus Hamiltonella defensa
          5AT (Acyrthosiphon pisum)]
 gi|229467037|gb|ACQ68811.1| conserved hypothetical protein, PHP domain protein [Candidatus
          Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 293

 Score = 45.4 bits (106), Expect = 0.051,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H+S S  +G L+   ++ +        +AITD +     +   +      + 
Sbjct: 12 LHSHTSAS--DGLLTPMQLVHRAVTMGVHILAITDHDTTSGLMAAKKTIQEQQLP 64


>gi|238757069|ref|ZP_04618257.1| hypothetical protein yaldo0001_17240 [Yersinia aldovae ATCC
          35236]
 gi|238704899|gb|EEP97428.1| hypothetical protein yaldo0001_17240 [Yersinia aldovae ATCC
          35236]
          Length = 314

 Score = 45.4 bits (106), Expect = 0.051,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H++ S  +G+L+ + ++ + A+ +   +AITD +      E +       + 
Sbjct: 28 LHSHTTAS--DGSLAPSALVLRAASMRVGVLAITDHDTTAGLAEAAATIEQHQLP 80


>gi|57866653|ref|YP_188309.1| hypothetical protein SERP0726 [Staphylococcus epidermidis RP62A]
 gi|57637311|gb|AAW54099.1| DNA-dependent DNA polymerase family X [Staphylococcus epidermidis
           RP62A]
          Length = 569

 Score = 45.4 bits (106), Expect = 0.051,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++YS  +GA S+  +++   A     + ITD 
Sbjct: 336 LHMHTTYS--DGAFSIKEMIEANIAKGYEFMVITDH 369


>gi|11499126|ref|NP_070360.1| hypothetical protein AF1531 [Archaeoglobus fulgidus DSM 4304]
 gi|2649033|gb|AAB89717.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 195

 Score = 45.4 bits (106), Expect = 0.051,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           L  + GVG      I+E    +PF+S ED   RV   +   +++ S +
Sbjct: 132 LELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVKGIQRPEKLIVSRI 179


>gi|172058181|ref|YP_001814641.1| hypothetical protein Exig_2172 [Exiguobacterium sibiricum 255-15]
 gi|171990702|gb|ACB61624.1| PHP domain protein [Exiguobacterium sibiricum 255-15]
          Length = 571

 Score = 45.4 bits (106), Expect = 0.051,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H+++S  +G LS++ ++D  AA     +AITD 
Sbjct: 336 HMHTTWS--DGTLSVDELVDACAARGYSWMAITDH 368


>gi|320536339|ref|ZP_08036381.1| PHP domain protein [Treponema phagedenis F0421]
 gi|320146820|gb|EFW38394.1| PHP domain protein [Treponema phagedenis F0421]
          Length = 308

 Score = 45.4 bits (106), Expect = 0.052,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           L  H++ S  +G+L++  + D + AD   A A+TD N +       +KA +
Sbjct: 6  ELHNHTNES--DGSLTVEELTDFMVADTVDAFALTDHNTISG----HKKAQS 51


>gi|304313837|ref|YP_003848984.1| phosphoesterase [Methanothermobacter marburgensis str. Marburg]
 gi|302587296|gb|ADL57671.1| predicted phosphoesterase [Methanothermobacter marburgensis str.
          Marburg]
          Length = 220

 Score = 45.4 bits (106), Expect = 0.053,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           +H+ YS  +   +  ++L + +     A+AI D N +  +L   + +   G+  +   
Sbjct: 7  HIHTVYS-GDARGTPRDVLKRASLVGLDAVAIADHNTMKGSLIAMEDSAEFGVTVVPAV 64


>gi|225019133|ref|ZP_03708325.1| hypothetical protein CLOSTMETH_03085 [Clostridium methylpentosum
           DSM 5476]
 gi|224948106|gb|EEG29315.1| hypothetical protein CLOSTMETH_03085 [Clostridium methylpentosum
           DSM 5476]
          Length = 294

 Score = 45.4 bits (106), Expect = 0.053,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 3/99 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++ S  +G+  +  ++          +AITD ++  S           G+  I G 
Sbjct: 23  LHCHTTLS--DGSAGIGEVIANAKLVGVDFLAITDHDSTSSFNRARVIGERYGVHIIEGV 80

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLV-STAEGYQR 111
           +L    Q   +  +           ++ +     E  +R
Sbjct: 81  ELSAFDQKRGRRVHILCYRPLKPDRLLGICTRNTENRKR 119


>gi|77920179|ref|YP_357994.1| putative hydrolase [Pelobacter carbinolicus DSM 2380]
 gi|90101852|sp|Q3A1D3|Y2586_PELCD RecName: Full=Putative hydrolase Pcar_2586
 gi|77546262|gb|ABA89824.1| histidinol phosphatase [Pelobacter carbinolicus DSM 2380]
          Length = 240

 Score = 45.4 bits (106), Expect = 0.053,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 12/52 (23%)

Query: 12 VHLQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN-NLFSALE 57
          V L VHS     +YS      ++N I  + A      +A+TD   N+ +A  
Sbjct: 9  VDLHVHSLASGHAYS------TINEIAAEAARRGLRGVAMTDHGPNMPAAPH 54


>gi|326566173|gb|EGE16327.1| PHP-like protein [Moraxella catarrhalis BC1]
          Length = 293

 Score = 45.4 bits (106), Expect = 0.054,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 17 HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
          HS+ S  +G  +   ++ K+A       A+TD + +    E  Q A   G++ I G ++ 
Sbjct: 2  HSTCS--DGTNTPTELIKKVALAGIQMAALTDHDTIKGLDEAKQTAKMVGVELIRGVEVS 59

Query: 77 IDM 79
             
Sbjct: 60 CTH 62


>gi|167586771|ref|ZP_02379159.1| PHP domain protein [Burkholderia ubonensis Bu]
          Length = 276

 Score = 45.4 bits (106), Expect = 0.054,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS  ++  +  A      A+TD + +        +A A G++ + G 
Sbjct: 5  LHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHDEVGGQAAARSEAEALGMRYLSGV 62

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 63 EISVTWASR 71


>gi|159026462|emb|CAO88974.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 227

 Score = 45.4 bits (106), Expect = 0.054,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
          +  P   +  +H+  S  +G +S   ++ +        +AITD ++    +E  ++A 
Sbjct: 27 DSCPHHYNFHLHTHCS--DGQMSPQGLMRQALDIGLKGLAITDHHS----IEGYRQAQ 78


>gi|323141461|ref|ZP_08076350.1| PHP domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322414041|gb|EFY04871.1| PHP domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 278

 Score = 45.4 bits (106), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H++ S  +G  +   ++ +    Q   IA+TD +++ +  E    A AAGI  +   
Sbjct: 7  LHIHTTAS--DGTWTPAELIAEAQKQQLGLIAVTDHDSVANVAEAMTLAAAAGITLLPAA 64

Query: 74 QLDIDMQD 81
          ++    +D
Sbjct: 65 EICSTKED 72


>gi|323497599|ref|ZP_08102616.1| hypothetical protein VISI1226_22270 [Vibrio sinaloensis DSM 21326]
 gi|323317348|gb|EGA70342.1| hypothetical protein VISI1226_22270 [Vibrio sinaloensis DSM 21326]
          Length = 283

 Score = 45.4 bits (106), Expect = 0.055,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 38/116 (32%), Gaps = 8/116 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-----IQ 68
           L  H++ S  +G L+ ++++D+  +     +AITD + +                   I 
Sbjct: 5   LHSHTTAS--DGRLAPHDLIDRALSFNLDVLAITDHDTVDGLQAAHDYIAQHQHPLKLIN 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLD 123
            I    +  +   ++   N           I       EG   LI   +S+     
Sbjct: 63  GIEISTVWQNKDIHIVGLNIDPDSEALNTLIEQQKKHREGRAELIAHRLSKATREG 118


>gi|288931666|ref|YP_003435726.1| PHP domain protein [Ferroglobus placidus DSM 10642]
 gi|288893914|gb|ADC65451.1| PHP domain protein [Ferroglobus placidus DSM 10642]
          Length = 212

 Score = 45.4 bits (106), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 9/74 (12%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNLFSALE----FSQKACAAG 66
          L VHS +S  +G L  + I  ++ +    A+ I D    +NL S +E    F+++    G
Sbjct: 4  LHVHSIFS--DGELIPSEIARRLESLDYKAVCIADHADLSNLSSVIEKLWKFAEEREEYG 61

Query: 67 IQPIIGCQLDIDMQ 80
          ++ ++G ++     
Sbjct: 62 VKVLVGVEITHVPP 75


>gi|193216104|ref|YP_001997303.1| PHP domain-containing protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193089581|gb|ACF14856.1| PHP domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 237

 Score = 45.4 bits (106), Expect = 0.055,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 64/176 (36%), Gaps = 17/176 (9%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-NLFSALEFSQKACAAGIQPIIGC 73
            +H+++S  +GALSL + ++  A +    I ITD   N     +   +    G+      
Sbjct: 11  HIHTAFS--DGALSLEDTIELYAENGFDVICITDHVLNEAELWDSWPQDQHPGVLLKAYY 68

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           +  I            K     +P I L  +  +G+  L   V       +   +  + +
Sbjct: 69  EDYIAALKVAAKKAWEKHELIVIPGIELT-NNTQGFHLLGVGV-------ESYMNPGLPI 120

Query: 134 SWL-QEIGTEGLIM-----LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             L  EI  +G I      L G   G  +  + +N  +  +  +  ++    + LY
Sbjct: 121 EVLAAEIHKQGGIAVAAHPLRGYLEGTNELMYLWNHREQFKHMIDAWEIGNRNELY 176


>gi|225351500|ref|ZP_03742523.1| hypothetical protein BIFPSEUDO_03096 [Bifidobacterium
          pseudocatenulatum DSM 20438]
 gi|225157844|gb|EEG71127.1| hypothetical protein BIFPSEUDO_03096 [Bifidobacterium
          pseudocatenulatum DSM 20438]
          Length = 308

 Score = 45.4 bits (106), Expect = 0.055,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            H+ +S  +G  +   +L +  A +   +AI D +      +    +  
Sbjct: 17 HCHTVFS--DGTETPRALLQEARALRLHGVAIADHDTTSGWQDALAASRE 64


>gi|212715495|ref|ZP_03323623.1| hypothetical protein BIFCAT_00392 [Bifidobacterium catenulatum
          DSM 16992]
 gi|212661577|gb|EEB22152.1| hypothetical protein BIFCAT_00392 [Bifidobacterium catenulatum
          DSM 16992]
          Length = 292

 Score = 45.4 bits (106), Expect = 0.055,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            H+ +S  +G  +   +L +  + +   +AI D +      +    +   G+  + 
Sbjct: 17 HCHTVFS--DGTETPCTLLKEARSLRLHGVAIADHDTTSGWQDALDASRQIGLPLLR 71


>gi|148654513|ref|YP_001274718.1| phosphotransferase domain-containing protein [Roseiflexus sp. RS-1]
 gi|148566623|gb|ABQ88768.1| PHP C-terminal domain protein [Roseiflexus sp. RS-1]
          Length = 286

 Score = 45.4 bits (106), Expect = 0.056,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 4/111 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H++ +      + + ++          IA+TD N   S     +     GI  I G 
Sbjct: 4   LHIHTNATPHHATWTPDTLMAAAVRAGLQVIAVTDHNTTASVRAVQEAGGRTGIHVISGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRLIELVSRMYLLD 123
           ++D       +     + PF     +V            L   V    L D
Sbjct: 64  EIDAGFPAGQR---DDRLPFKLWHVLVYGADPEHPSLLALCRSVDERNLAD 111


>gi|15669485|ref|NP_248295.1| hypothetical protein MJ_1295 [Methanocaldococcus jannaschii DSM
          2661]
 gi|41018419|sp|Q58691|Y1295_METJA RecName: Full=Uncharacterized protein MJ1295
 gi|1591933|gb|AAB99302.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
          2661]
          Length = 218

 Score = 45.4 bits (106), Expect = 0.056,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G L    ++ +    +  AIAITD 
Sbjct: 6  HTHTVFS--DGELIPAELVRRARVLKHRAIAITDH 38


>gi|167629877|ref|YP_001680376.1| DNA polymerase x family protein, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592617|gb|ABZ84365.1| DNA polymerase x family protein, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 572

 Score = 45.4 bits (106), Expect = 0.057,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 9/48 (18%)

Query: 9   PSFVHL-------QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           P  V L        +H+++S  +G  SL  ++          +AITD 
Sbjct: 327 PDLVELGDILGDFHIHTNWS--DGVSSLEEMVSAGRDRGYAYMAITDH 372


>gi|321312392|ref|YP_004204679.1| hypothetical protein BSn5_05120 [Bacillus subtilis BSn5]
 gi|320018666|gb|ADV93652.1| hypothetical protein BSn5_05120 [Bacillus subtilis BSn5]
          Length = 570

 Score = 45.4 bits (106), Expect = 0.059,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +         +AITD 
Sbjct: 338 LHMHSTWS--DGAFSIREMAEACIKKGYQYMAITDH 371


>gi|304413777|ref|ZP_07395221.1| PHP domain-containing hypothetical protein [Candidatus Regiella
          insecticola LSR1]
 gi|304283868|gb|EFL92262.1| PHP domain-containing hypothetical protein [Candidatus Regiella
          insecticola LSR1]
          Length = 289

 Score = 45.4 bits (106), Expect = 0.059,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          L  H+  S  +G L+   ++ + A  +   +AITD +      E         +
Sbjct: 16 LHSHTVAS--DGLLTPTELVTRAALMRVGVLAITDHDTTNGLAEADAAIQQQNL 67


>gi|300311698|ref|YP_003775790.1| DNA polymerase IV protein [Herbaspirillum seropedicae SmR1]
 gi|300074483|gb|ADJ63882.1| DNA polymerase IV protein [Herbaspirillum seropedicae SmR1]
          Length = 593

 Score = 45.4 bits (106), Expect = 0.059,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH+ Y   +G  ++  +    A      IAITD 
Sbjct: 341 LHVHTHYP--DGKNTIIEMASTAALLGLEYIAITDH 374


>gi|312883595|ref|ZP_07743320.1| putative metal-dependent phosphoesterase YciV [Vibrio
          caribbenthicus ATCC BAA-2122]
 gi|309368818|gb|EFP96345.1| putative metal-dependent phosphoesterase YciV [Vibrio
          caribbenthicus ATCC BAA-2122]
          Length = 283

 Score = 45.4 bits (106), Expect = 0.060,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          L  H++ S  +G LS   ++D+    +   +AITD + +    +  +
Sbjct: 5  LHSHTTAS--DGRLSPQALVDRAIDFELDVLAITDHDTIEGLDQAHR 49


>gi|16079911|ref|NP_390737.1| hypothetical protein BSU28590 [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221310800|ref|ZP_03592647.1| hypothetical protein Bsubs1_15606 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315125|ref|ZP_03596930.1| hypothetical protein BsubsN3_15512 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320043|ref|ZP_03601337.1| hypothetical protein BsubsJ_15418 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324325|ref|ZP_03605619.1| hypothetical protein BsubsS_15577 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81637732|sp|P94544|POLX_BACSU RecName: Full=DNA polymerase/3'-5' exonuclease PolX; Includes:
           RecName: Full=DNA polymerase type-X; Includes: RecName:
           Full=3'-5' exodeoxyribonuclease; Short=3'-5' exonuclease
 gi|1770035|emb|CAA99568.1| hypothetical protein [Bacillus subtilis]
 gi|2635324|emb|CAB14819.1| DNA polymerase X [Bacillus subtilis subsp. subtilis str. 168]
          Length = 570

 Score = 45.4 bits (106), Expect = 0.060,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +         +AITD 
Sbjct: 338 LHMHSTWS--DGAFSIREMAEACIKKGYQYMAITDH 371


>gi|291485291|dbj|BAI86366.1| hypothetical protein BSNT_04172 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 570

 Score = 45.0 bits (105), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +         +AITD 
Sbjct: 338 LHMHSTWS--DGAFSIREMAEACIKKGYQYMAITDH 371


>gi|72382170|ref|YP_291525.1| phosphoesterase PHP, N-terminal [Prochlorococcus marinus str.
          NATL2A]
 gi|72002020|gb|AAZ57822.1| phosphoesterase PHP, N-terminal protein [Prochlorococcus marinus
          str. NATL2A]
          Length = 219

 Score = 45.0 bits (105), Expect = 0.061,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          +  P+ ++  +HS+YS  +G+LS   I ++         AITD +++
Sbjct: 19 DSCPNSINFHMHSTYS--DGSLSPIEIYNQALELNIDHYAITDHHSV 63


>gi|152965131|ref|YP_001360915.1| PHP domain protein [Kineococcus radiotolerans SRS30216]
 gi|151359648|gb|ABS02651.1| PHP domain protein [Kineococcus radiotolerans SRS30216]
          Length = 285

 Score = 45.0 bits (105), Expect = 0.061,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 12/171 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G      ++   A      IA+TD +      E        G++ + G 
Sbjct: 5   LHTHSNAS--DGTQPPAGVVTSAAEAGLDVIALTDHDTSDGWDEAVATGERLGVRVVPGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++              +      P   +L  +           SR  L+ + +      L
Sbjct: 63  EISCLRGGVSVHLLSYRHDPADEPLARMLAGSRTSRA------SRARLMVE-RLGPDTGL 115

Query: 134 SW---LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
            W   L+ +     I     +   + R    +  +     L    + F  +
Sbjct: 116 RWEDVLEHVHGGATIGRPHIADALVARGVVADRDEAFATVLSGRSRYFVPQ 166


>gi|242242443|ref|ZP_04796888.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus
           epidermidis W23144]
 gi|242234093|gb|EES36405.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus
           epidermidis W23144]
          Length = 466

 Score = 45.0 bits (105), Expect = 0.062,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++YS  +GA S+  +++   A     + ITD 
Sbjct: 233 LHMHTTYS--DGAFSIKEMIEANIAKGYEFMVITDH 266


>gi|240102962|ref|YP_002959271.1| hypothetical protein TGAM_0905 [Thermococcus gammatolerans EJ3]
 gi|239910516|gb|ACS33407.1| Conserved hypothetical protein [Thermococcus gammatolerans EJ3]
          Length = 206

 Score = 45.0 bits (105), Expect = 0.062,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             +SL  + G+G      I+E    +PF S ED  SRV        ++   V    +D  
Sbjct: 133 RLHSLELLPGIGKKLMWEILEERRKEPFKSFEDLKSRVKGLHDPCEMIAKRV----IDEL 188

Query: 895 -GYSRMQLL 902
            G  R +L 
Sbjct: 189 QGKDRYRLF 197


>gi|315230156|ref|YP_004070592.1| RNA-binding protein [Thermococcus barophilus MP]
 gi|315183184|gb|ADT83369.1| RNA-binding protein [Thermococcus barophilus MP]
          Length = 207

 Score = 45.0 bits (105), Expect = 0.062,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             +SL  + G+G      I+E    +PF+S ED   RV       +++   +    LD  
Sbjct: 134 RLHSLELLPGIGKKHMWEIIEERQRQPFESFEDLRHRVKGLPDPVKMIAKRI----LDEL 189

Query: 895 -GYSRMQLLQSLDNIQKY 911
            G  R +L    + + + 
Sbjct: 190 QGKDRYRLFVGHNRLFRE 207


>gi|126178422|ref|YP_001046387.1| hypothetical protein Memar_0472 [Methanoculleus marisnigri JR1]
 gi|125861216|gb|ABN56405.1| PHP C-terminal domain protein [Methanoculleus marisnigri JR1]
          Length = 214

 Score = 45.0 bits (105), Expect = 0.062,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+  S  +G L    ++ + A      +A+TD 
Sbjct: 4  LHTHTILS--DGELLPTELVRRAAVLGYETLAVTDH 37


>gi|124003545|ref|ZP_01688394.1| DNA polymerase IV [Microscilla marina ATCC 23134]
 gi|123991114|gb|EAY30566.1| DNA polymerase IV [Microscilla marina ATCC 23134]
          Length = 567

 Score = 45.0 bits (105), Expect = 0.063,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS+YS  +G  +L  +   +       + ITD 
Sbjct: 330 LHAHSTYS--DGKNTLEEMALAVKNAGYEYLGITDH 363


>gi|111222360|ref|YP_713154.1| hypothetical protein FRAAL2942 [Frankia alni ACN14a]
 gi|111149892|emb|CAJ61586.1| conserved hypothetical protein [Frankia alni ACN14a]
          Length = 288

 Score = 45.0 bits (105), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G +    ++          IA+TD +     ++ +  A   G+  I G 
Sbjct: 8  LHTHSTAS--DGLIHPEALMRLAVEMALLVIALTDHDTYRG-IDAAASALPPGLTLIPGV 64

Query: 74 QLDI 77
          ++  
Sbjct: 65 EISC 68


>gi|257465638|ref|ZP_05630009.1| tryptophan synthase subunit alpha [Actinobacillus minor 202]
 gi|257451298|gb|EEV25341.1| tryptophan synthase subunit alpha [Actinobacillus minor 202]
          Length = 268

 Score = 45.0 bits (105), Expect = 0.064,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 52/153 (33%), Gaps = 12/153 (7%)

Query: 33  LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
             + A +   A+ I D   L  A EF+  A   GIQP+  C  + D     K+    +  
Sbjct: 115 FKRCAENGVDAVLIADLPVLA-AEEFTGTAKKYGIQPVFICPPNADQATIEKVAELTEGY 173

Query: 93  FPTVPSI-VLLVSTAEGYQRLIELV-------SRMYLLDQGKQSVRICLSWLQEIGTEGL 144
              V    V           L  LV       S   L   G          L  +G +G 
Sbjct: 174 TYLVSRAGVTSAENQAHASNLDHLVESLKRSNSAPILQGFGIAKPAQVKEALA-LGCDG- 231

Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             ++G +   I  A   N +++ ++     K++
Sbjct: 232 -AISGSAIVKIIEANLANQTKLLQELGQFVKEM 263


>gi|254171910|ref|ZP_04878586.1| DNA-binding protein [Thermococcus sp. AM4]
 gi|214033806|gb|EEB74632.1| DNA-binding protein [Thermococcus sp. AM4]
          Length = 206

 Score = 45.0 bits (105), Expect = 0.064,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             +SL  + G+G      I+E    +PF S ED  SRV        ++   V    +D  
Sbjct: 133 RLHSLELLPGIGKKLMWEILEERRKEPFKSFEDLKSRVKGLHDPCDMIAKRV----IDEL 188

Query: 895 -GYSRMQLL 902
            G  R +L 
Sbjct: 189 QGKDRYRLF 197


>gi|317129870|ref|YP_004096152.1| PHP domain protein [Bacillus cellulosilyticus DSM 2522]
 gi|315474818|gb|ADU31421.1| PHP domain protein [Bacillus cellulosilyticus DSM 2522]
          Length = 574

 Score = 45.0 bits (105), Expect = 0.065,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  +++     +   +AITD 
Sbjct: 342 LHMHTTWS--DGADSIEEMIEACRNRKYDYMAITDH 375


>gi|166365135|ref|YP_001657408.1| hypothetical protein MAE_23940 [Microcystis aeruginosa NIES-843]
 gi|166087508|dbj|BAG02216.1| hypothetical protein MAE_23940 [Microcystis aeruginosa NIES-843]
          Length = 546

 Score = 45.0 bits (105), Expect = 0.065,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
            H+  EF     T ++   E IK   +  R    +  P SV          +      L 
Sbjct: 443 AHFDREFQYLYRTAKLGLPETIKNRIEQDR----KNCPQSVTIKSDRLINLNTATKEELD 498

Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
           ++ G+    A  I+ A   KPF SLED   RV      +
Sbjct: 499 SLPGISGKLAEKIIAARQQKPFTSLEDL-DRVSGIGQGK 536


>gi|148242304|ref|YP_001227461.1| metal-dependent phosphoesterase [Synechococcus sp. RCC307]
 gi|147850614|emb|CAK28108.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Synechococcus sp. RCC307]
          Length = 218

 Score = 45.0 bits (105), Expect = 0.065,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
             P+ ++   HS  S  +G+LS   I D+        +A+TD +++ 
Sbjct: 18 NSCPTRLNFHCHSLCS--DGSLSPAQIADQAVEIGLEHMAVTDHHSVA 63


>gi|48477459|ref|YP_023165.1| hypothetical protein PTO0387 [Picrophilus torridus DSM 9790]
 gi|48430107|gb|AAT42972.1| hypothetical protein DUF655 [Picrophilus torridus DSM 9790]
          Length = 183

 Score = 45.0 bits (105), Expect = 0.065,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%)

Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           N   ++L  + G+G  +   I+E    KPF+S ED   RV S    ++++ + + 
Sbjct: 113 NSRLHTLELLPGLGNKSMWSILEERKKKPFESFEDISERVKSVHNPKKMIVNRIL 167


>gi|217966976|ref|YP_002352482.1| PHP domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217336075|gb|ACK41868.1| PHP domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 244

 Score = 45.0 bits (105), Expect = 0.065,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +H+ YS  +G +S + I++         + I D ++   A +    A +  I
Sbjct: 6  HIHTKYSF-DGMMSPSKIVEYAKRRVINILLICDHDSFEGARQALDYAYSKKI 57


>gi|121608595|ref|YP_996402.1| phosphotransferase domain-containing protein [Verminephrobacter
          eiseniae EF01-2]
 gi|121553235|gb|ABM57384.1| PHP C-terminal domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 303

 Score = 45.0 bits (105), Expect = 0.065,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  S  +G LS  ++  +  A+     A+TD +
Sbjct: 13 LHCHSVVS--DGTLSPEDLAARARANGVQLWALTDHD 47


>gi|289191845|ref|YP_003457786.1| PHP domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938295|gb|ADC69050.1| PHP domain protein [Methanocaldococcus sp. FS406-22]
          Length = 218

 Score = 45.0 bits (105), Expect = 0.066,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G L    ++ +    +  AIAITD 
Sbjct: 6  HTHTIFS--DGELIPAELVRRARVLKHKAIAITDH 38


>gi|187924970|ref|YP_001896612.1| hypothetical protein Bphyt_2994 [Burkholderia phytofirmans PsJN]
 gi|187716164|gb|ACD17388.1| helix-hairpin-helix motif [Burkholderia phytofirmans PsJN]
          Length = 121

 Score = 45.0 bits (105), Expect = 0.067,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 11/68 (16%)

Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
           F        VNT   D          +L  IKG+G   A+ I+E   A  PF    D   
Sbjct: 15  FGHAYAAVDVNTANED----------ALRGIKGIGPAKAKAILEERSAHGPFKDPADLGK 64

Query: 871 RVDSKKLN 878
           RV     +
Sbjct: 65  RVKGMGGH 72


>gi|116750328|ref|YP_847015.1| group 1 glycosyl transferase [Syntrophobacter fumaroxidans MPOB]
 gi|116699392|gb|ABK18580.1| glycosyl transferase, group 1 [Syntrophobacter fumaroxidans MPOB]
          Length = 827

 Score = 45.0 bits (105), Expect = 0.068,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 12/67 (17%)

Query: 3  QYLEKSPSFVHLQVHSSYSLL------------EGALSLNNILDKIAADQQPAIAITDTN 50
          +  E   + V L +HS +S+             E       +           + ITD N
Sbjct: 4  ESTESETTRVDLHLHSKFSIRPSQWVLQKIGCPESFADPAELYGLARRKGMSLVTITDHN 63

Query: 51 NLFSALE 57
           +   LE
Sbjct: 64 TIAGCLE 70


>gi|322514044|ref|ZP_08067115.1| tryptophan synthase alpha subunit [Actinobacillus ureae ATCC 25976]
 gi|322120061|gb|EFX92032.1| tryptophan synthase alpha subunit [Actinobacillus ureae ATCC 25976]
          Length = 275

 Score = 45.0 bits (105), Expect = 0.069,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 46/149 (30%), Gaps = 12/149 (8%)

Query: 33  LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
             + A     A+ I D   L  A EF+Q A   GIQ +  C  + +     ++ N  +  
Sbjct: 120 FKRCAEIGVDAVLIADVPVLA-AEEFTQTAKKHGIQLVFICPPNANKATIERIANLTEGY 178

Query: 93  FPTVPSI-VLLVSTAEGYQRLIELV-------SRMYLLDQGKQSVRICLSWLQEIGTEGL 144
              V    V           L  L+       S   L   G          L  +G +G 
Sbjct: 179 TYLVSRAGVTSAENQAHAANLDNLIDSLKRSNSAPILQGFGIAKPEQVKEALA-LGCDG- 236

Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             ++G +   I      N  Q+  +    
Sbjct: 237 -AISGSAIVKIIENHLDNQPQLLAELASF 264


>gi|313673816|ref|YP_004051927.1| php domain protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940572|gb|ADR19764.1| PHP domain protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 220

 Score = 45.0 bits (105), Expect = 0.069,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+++S  +G L       +        IAITD 
Sbjct: 4  LHTHTTFS--DGVLIPAESCRRAKVAGYQGIAITDH 37


>gi|303238207|ref|ZP_07324743.1| PHP domain protein [Acetivibrio cellulolyticus CD2]
 gi|302594253|gb|EFL63965.1| PHP domain protein [Acetivibrio cellulolyticus CD2]
          Length = 262

 Score = 45.0 bits (105), Expect = 0.069,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
          L +HS+ S  +G+ +++ I+D    +    IAITD + + 
Sbjct: 5  LHIHSTVS--DGSKTIHEIIDMATNNGLDFIAITDHDTMA 42


>gi|116070560|ref|ZP_01467829.1| Phosphoesterase PHP-like protein [Synechococcus sp. BL107]
 gi|116065965|gb|EAU71722.1| Phosphoesterase PHP-like protein [Synechococcus sp. BL107]
          Length = 215

 Score = 45.0 bits (105), Expect = 0.069,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            H+  S  +G+L    ++ +        +A+TD ++
Sbjct: 24 HCHTVCS--DGSLEPIELIQQATTLGLSHLAVTDHHS 58


>gi|315126775|ref|YP_004068778.1| hypothetical protein PSM_A1702 [Pseudoalteromonas sp. SM9913]
 gi|315015289|gb|ADT68627.1| hypothetical protein PSM_A1702 [Pseudoalteromonas sp. SM9913]
          Length = 284

 Score = 45.0 bits (105), Expect = 0.070,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L  H+++S  +G L++  +L +         AITD + + + 
Sbjct: 6  LHSHTTHS--DGHLTVEELLARAVDKNIDVFAITDHDTVAAI 45


>gi|46447259|ref|YP_008624.1| hypothetical protein pc1625 [Candidatus Protochlamydia
          amoebophila UWE25]
 gi|46400900|emb|CAF24349.1| conserved hypothetical protein [Candidatus Protochlamydia
          amoebophila UWE25]
          Length = 280

 Score = 45.0 bits (105), Expect = 0.070,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +G +    I++         ++ITD + + +  + +  A   G+  I G 
Sbjct: 8  LHCHTTCS--DGTVDPLEIINLAINSGLQGLSITDHDTIEAYKDAAPFAQQKGLSLIPGV 65

Query: 74 QLDIDMQ 80
          +    + 
Sbjct: 66 EFSASLG 72


>gi|217967981|ref|YP_002353487.1| PHP domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217337080|gb|ACK42873.1| PHP domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 580

 Score = 45.0 bits (105), Expect = 0.071,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH+ +S  +GA +L  +++         + I+D 
Sbjct: 345 HVHTDWS--DGANTLEEMVEVAYKLGYKYVVISDH 377


>gi|37522720|ref|NP_926097.1| hypothetical protein glr3151 [Gloeobacter violaceus PCC 7421]
 gi|35213722|dbj|BAC91092.1| glr3151 [Gloeobacter violaceus PCC 7421]
          Length = 241

 Score = 45.0 bits (105), Expect = 0.071,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 14/139 (10%)

Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAW-MKTHYPVEFLAASMTLEMDNVEKIKKF--C 806
           + ++          +   A     + T W +   +  +  +      +   +  ++    
Sbjct: 36  WAVVYAILSSLGVIAGTVAGEWFLFWTVWGLVAAHTFQVQSEYQNRLLLMQDSQQRLQSD 95

Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSL 865
           QD R      M   +N   +D           L  + G+    AR I+EA     P+ S 
Sbjct: 96  QDMRLARELGMGIDINRCSIDD----------LLRLPGLSIIEARRIVEARRSGGPYLSA 145

Query: 866 EDFCSRVDSKKLNRRVLES 884
           ++   R D   +  R LE 
Sbjct: 146 DELIERADLSSIKVRRLEP 164


>gi|294623387|ref|ZP_06702245.1| hypothetical protein EfmU0317_2645 [Enterococcus faecium U0317]
 gi|291597208|gb|EFF28401.1| hypothetical protein EfmU0317_2645 [Enterococcus faecium U0317]
          Length = 331

 Score = 45.0 bits (105), Expect = 0.073,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
          + L  H+ +S  +G  S++ ++     +    + +TD N   
Sbjct: 6  IELHAHTCHS--DGDFSIHQLIQAAKEEPYQVLTVTDHNTFA 45


>gi|288559417|ref|YP_003422903.1| RNA-binding protein [Methanobrevibacter ruminantium M1]
 gi|288542127|gb|ADC46011.1| RNA-binding protein [Methanobrevibacter ruminantium M1]
          Length = 249

 Score = 45.0 bits (105), Expect = 0.073,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           L  I G+G    + I+E    +PF   ED   RV        +L   V
Sbjct: 130 LELIPGIGKKHTQMILEERKKEPFKDFEDLKKRVPLLGDPVDMLAKRV 177


>gi|218262083|ref|ZP_03476680.1| hypothetical protein PRABACTJOHN_02352 [Parabacteroides johnsonii
          DSM 18315]
 gi|218223612|gb|EEC96262.1| hypothetical protein PRABACTJOHN_02352 [Parabacteroides johnsonii
          DSM 18315]
          Length = 246

 Score = 45.0 bits (105), Expect = 0.073,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 12 VHLQVHSSYSLLEGA-LSLNNILDKIAADQQPAIAITDTNN 51
          V L +H+  S      +S   I++        AIA+TD N+
Sbjct: 6  VDLHLHTCLSPCGSLEMSPRQIVETALEQGLDAIAVTDHNS 46


>gi|307297301|ref|ZP_07577107.1| histidinol phosphate phosphatase HisJ family [Thermotogales
          bacterium mesG1.Ag.4.2]
 gi|306916561|gb|EFN46943.1| histidinol phosphate phosphatase HisJ family [Thermotogales
          bacterium mesG1.Ag.4.2]
          Length = 250

 Score = 45.0 bits (105), Expect = 0.074,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          V L  HSS+S  +    +  I+++        I I+D ++L
Sbjct: 3  VDLHNHSSFSP-DSQTPVEEIVEEAILKGLKVIGISDHDDL 42


>gi|89894549|ref|YP_518036.1| hypothetical protein DSY1803 [Desulfitobacterium hafniense Y51]
 gi|219668981|ref|YP_002459416.1| PHP domain protein [Desulfitobacterium hafniense DCB-2]
 gi|89333997|dbj|BAE83592.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539241|gb|ACL20980.1| PHP domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 280

 Score = 45.0 bits (105), Expect = 0.074,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 8  SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          +P+ + L +H+  S  +G+LS+  ++ + A      +A+TD        E  +      +
Sbjct: 2  APTAIDLHIHTIES--DGSLSVAGVIQEAAERGVRVLALTDHETTNGVPEAMELGQKHNL 59

Query: 68 QPIIGCQLDIDMQ 80
            I G +L    +
Sbjct: 60 NIIPGVELITAFK 72


>gi|83591307|ref|YP_431316.1| putative hydrolase [Moorella thermoacetica ATCC 39073]
 gi|83574221|gb|ABC20773.1| PHP-like protein [Moorella thermoacetica ATCC 39073]
          Length = 248

 Score = 45.0 bits (105), Expect = 0.074,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 62/223 (27%), Gaps = 31/223 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+  S      ++  + +         IAITD                  +      
Sbjct: 7   LHTHTVAS-GHAYSTVKELAEAAEKRGLKMIAITDHG--------------LKMPGGPHE 51

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE----LVSRMYLLDQGKQSV 129
               ++    +     +       +I+ +    +  +RL+E    +++  +         
Sbjct: 52  YHFGNLVALPRKIGGVEILRGVEANIIDVDGNLDLPERLLEELDIVLAGFHTGTGFDNRP 111

Query: 130 RIC--LSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 + L  I      LI+  G    P+D                  K L  +    +
Sbjct: 112 AEDYTRAVLAAIANPRVHLIVHPGNPDFPVDIEKL------VLAAAREHKALEINNNSFS 165

Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
           + R       R   + +LA  H++ +   +++   S     A 
Sbjct: 166 ISRQGSLP--RCQLLAKLAQKHKVQVAVNSDAHIFSSVGNFAR 206


>gi|212710705|ref|ZP_03318833.1| hypothetical protein PROVALCAL_01772 [Providencia alcalifaciens DSM
           30120]
 gi|212686402|gb|EEB45930.1| hypothetical protein PROVALCAL_01772 [Providencia alcalifaciens DSM
           30120]
          Length = 307

 Score = 45.0 bits (105), Expect = 0.075,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 59/150 (39%), Gaps = 18/150 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++ S  +G L+   ++++        ++ITD +     +  ++   A   +P+   
Sbjct: 31  LHSHTNAS--DGDLTPAELVERAIVMGVNVLSITDHDTCDGVI-AARAYLAENPRPLTLV 87

Query: 74  Q--LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
                  + +N+++   G    P+ P++            L+E  S+  L    +   R+
Sbjct: 88  NGVEISTLWENIEIHIVGLNFSPSEPAMAT----------LLEQQSQRRLERGIEMGRRL 137

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
             + + +        L+GG  G + RA F 
Sbjct: 138 QKAGIDDAWENAQ-ALSGG--GQVTRAHFA 164


>gi|197121699|ref|YP_002133650.1| PHP domain protein [Anaeromyxobacter sp. K]
 gi|196171548|gb|ACG72521.1| PHP domain protein [Anaeromyxobacter sp. K]
          Length = 592

 Score = 45.0 bits (105), Expect = 0.076,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
             H+++S  +G  S+  +     A     + ITD +    
Sbjct: 362 HCHTTWS--DGRASVEEMARAAEALGMAYLTITDHSGSAG 399


>gi|121533599|ref|ZP_01665426.1| PHP C-terminal domain protein [Thermosinus carboxydivorans Nor1]
 gi|121307590|gb|EAX48505.1| PHP C-terminal domain protein [Thermosinus carboxydivorans Nor1]
          Length = 576

 Score = 45.0 bits (105), Expect = 0.078,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH+ YS  +G  ++  +     A     I ITD 
Sbjct: 340 HVHTVYS--DGTATIAEMARGAQARGWQYIGITDH 372


>gi|73662961|ref|YP_301742.1| hypothetical protein SSP1652 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495476|dbj|BAE18797.1| DNA polymerase X family protein [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 570

 Score = 45.0 bits (105), Expect = 0.079,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ +++          + ITD 
Sbjct: 337 HMHTTYS--DGAFSIEDMVKANIEKGYEFMVITDH 369


>gi|255525939|ref|ZP_05392865.1| phosphoesterase PHP domain protein [Clostridium carboxidivorans
          P7]
 gi|255510358|gb|EET86672.1| phosphoesterase PHP domain protein [Clostridium carboxidivorans
          P7]
          Length = 59

 Score = 44.6 bits (104), Expect = 0.079,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           +H++ S  +G  S   +++  + +    ++ITD + ++  LE   +     ++
Sbjct: 8  HLHTTAS--DGKFSPKELVNMASKENIDIMSITDHDTIYGVLEAVLEGKNLELR 59


>gi|167570783|ref|ZP_02363657.1| hypothetical protein BoklC_13125 [Burkholderia oklahomensis C6786]
          Length = 105

 Score = 44.6 bits (104), Expect = 0.079,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
           +L  IKG+G   AR I++   A  P+    D   RV  K +  + +E L   G 
Sbjct: 31  ALRGIKGIGPAKARAIVDERTAHGPYKDAADLARRV--KGMGGKTVERLQAEGL 82


>gi|311104922|ref|YP_003977775.1| helix-hairpin-helix DNA-binding, class 1 [Achromobacter
           xylosoxidans A8]
 gi|310759611|gb|ADP15060.1| helix-hairpin-helix DNA-binding, class 1 [Achromobacter
           xylosoxidans A8]
          Length = 164

 Score = 44.6 bits (104), Expect = 0.080,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
           L  ++G+G   A  I+ E      F+SL D   RV      +    +L  AG L
Sbjct: 67  LEGVRGIGPRMAEIIVKERERGGKFESLNDLAERVRGIGPKKAQ--ALQEAGLL 118


>gi|126459054|ref|YP_001055332.1| putative nucleotide binding protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126248775|gb|ABO07866.1| putative nucleotide binding protein [Pyrobaculum calidifontis JCM
           11548]
          Length = 194

 Score = 44.6 bits (104), Expect = 0.081,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            +SL  ++GVG    + I+E    KPF S ED   RV
Sbjct: 124 MHSLELLRGVGKKKVQEILEERKKKPFTSYEDVKQRV 160


>gi|297570593|ref|YP_003691937.1| PHP domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296926508|gb|ADH87318.1| PHP domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 205

 Score = 44.6 bits (104), Expect = 0.083,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH+S+S     L L  IL   AA     + +TD N + +  +  +   A G+  I+G 
Sbjct: 5  LHVHTSHSAC-STLELGQILAHAAARGLDGVCLTDHNTMAAGQQVREGIQADGLCVIVGM 63

Query: 74 QLDIDMQD 81
          +      D
Sbjct: 64 EYATPQGD 71


>gi|330507627|ref|YP_004384055.1| DNA polymerase D, small subunit DP1 [Methanosaeta concilii GP-6]
 gi|328928435|gb|AEB68237.1| DNA polymerase D, small subunit DP1 [Methanosaeta concilii GP-6]
          Length = 540

 Score = 44.6 bits (104), Expect = 0.083,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 972  KPIL-RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            + IL R++  +  E    +  G  + L  MV+  +   T KG+R+  +   +P     A 
Sbjct: 173  REILSRRINSRPIESLSKSTSGREVSLIGMVLDIRN--TSKGNRV--IELEDPTGMIVAV 228

Query: 1031 F 1031
             
Sbjct: 229  I 229


>gi|302870410|ref|YP_003839047.1| PHP domain-containing protein [Micromonospora aurantiaca ATCC
           27029]
 gi|302573269|gb|ADL49471.1| PHP domain protein [Micromonospora aurantiaca ATCC 27029]
          Length = 356

 Score = 44.6 bits (104), Expect = 0.083,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 61/227 (26%), Gaps = 26/227 (11%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPI 70
             HS  S  +G   +  +           + +TD      +   +      A     Q  
Sbjct: 107 HTHSDCS--DGGSPIEEMALAAVELGHEYMVLTDH-----SPRLTVARGLTAERLRKQLD 159

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
               ++  +    ++    +       S+       +   RL  +V  ++         +
Sbjct: 160 HVAAVNEALPKGFRILTGIEVDILADGSL---DQDEKLLARLDVVVGSVHS-GLNDDRAK 215

Query: 131 ICLSWLQEIGTEGLIMLTGGSS-----------GPIDRAFFFNSSQVAEKRLLTFKKLFG 179
           +    L  I    L +L   +            GP DR     + + +E           
Sbjct: 216 MTRRMLTAIANPHLDILGHCTGRMVSSRPAGVTGPGDRGHRARTRKESEFDADAVFAACA 275

Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
           +         R   +    ++++LA           ++    + D++
Sbjct: 276 EHDVAVEINSRPERQDPPKRLIRLALEAGCRFAIDTDAHAPGQLDWQ 322


>gi|325290155|ref|YP_004266336.1| PHP domain protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324965556|gb|ADY56335.1| PHP domain protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 283

 Score = 44.6 bits (104), Expect = 0.085,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G LS+       A      IA  D        +  + A    I  I G 
Sbjct: 9  LHIHTKES--DGLLSVEEAFQTAAQAGLSTIAFVDHETTVGVEKSFKLAEVYQINLIPGV 66

Query: 74 QLDIDMQD 81
          +++ D ++
Sbjct: 67 EIETDYKN 74


>gi|323700736|ref|ZP_08112648.1| PHP domain protein [Desulfovibrio sp. ND132]
 gi|323460668|gb|EGB16533.1| PHP domain protein [Desulfovibrio desulfuricans ND132]
          Length = 205

 Score = 44.6 bits (104), Expect = 0.085,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 12 VH----LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          VH    L VHS+ S     L  + IL    +    A+ ITD + +
Sbjct: 4  VHMLIDLHVHSTCSPC-SVLKPSEILANARSLGLDAVCITDHDTM 47


>gi|148654262|ref|YP_001274467.1| phosphotransferase domain-containing protein [Roseiflexus sp. RS-1]
 gi|148566372|gb|ABQ88517.1| PHP C-terminal domain protein [Roseiflexus sp. RS-1]
          Length = 580

 Score = 44.6 bits (104), Expect = 0.085,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 67/250 (26%), Gaps = 17/250 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-AAGIQPIIG 72
           L +HS++S  +G   +  + +   A     IAITD +               A  + I  
Sbjct: 345 LHMHSTWS--DGRADIRTMAEAARARGYSHIAITDHSAYIGLTHGLDAERLRAQRREIAA 402

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                  Q        G     T    + L         L  +V+  ++  Q +QS    
Sbjct: 403 LNAAYAAQGIPFRILCGVEVDMTPEGSLALPDDV--LAELDIVVASAHI--QLRQSPEAA 458

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              L        + + G   G         S + A   +    +   +   +        
Sbjct: 459 TERLLRAVRNPHVDIIGHPVG-----RMLGSREGAPVDIDALARAAAEHGVLLEVNSGPT 513

Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
               E   V+ A      +   +++      D+    V+ A             +V    
Sbjct: 514 RLDLEGPAVRRALELGATIAINSDAHHPDNLDWIRFGVITARRG-----WAGAAQVANTW 568

Query: 253 YLKNRSEMVS 262
             +   E + 
Sbjct: 569 SFEALQEWLR 578


>gi|323698029|ref|ZP_08109941.1| PHP domain protein [Desulfovibrio sp. ND132]
 gi|323457961|gb|EGB13826.1| PHP domain protein [Desulfovibrio desulfuricans ND132]
          Length = 216

 Score = 44.6 bits (104), Expect = 0.086,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNLFSALE 57
          L  H+ +S  +G L    ++ +       AI +TD      ++ ALE
Sbjct: 4  LHTHTIFS--DGELIPAELVRRAEVIGYKAICMTDHADEATMYHALE 48


>gi|269967047|ref|ZP_06181115.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269828306|gb|EEZ82572.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 285

 Score = 44.6 bits (104), Expect = 0.086,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L  H++ S  +G L   +++++  +     +AITD + +   
Sbjct: 5  LHSHTTAS--DGRLEPKDLVERALSFDIEVLAITDHDTVDGL 44


>gi|317153129|ref|YP_004121177.1| PHP domain-containing protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943380|gb|ADU62431.1| PHP domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 220

 Score = 44.6 bits (104), Expect = 0.086,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+ +S  +G L    ++ +       AI +TD 
Sbjct: 4  LHTHTIFS--DGELIPAELVRRAEVIGYKAICMTDH 37


>gi|171322307|ref|ZP_02911139.1| PHP domain protein [Burkholderia ambifaria MEX-5]
 gi|171092369|gb|EDT37730.1| PHP domain protein [Burkholderia ambifaria MEX-5]
          Length = 276

 Score = 44.6 bits (104), Expect = 0.086,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS  ++  +  A      A+TD + +        +A A G++ + G 
Sbjct: 5  LHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHDEIGGQAAARSEAQALGMRYLSGV 62

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 63 EISVTWASR 71


>gi|237736943|ref|ZP_04567424.1| histidinol phosphate phosphatase [Fusobacterium mortiferum ATCC
          9817]
 gi|229420805|gb|EEO35852.1| histidinol phosphate phosphatase [Fusobacterium mortiferum ATCC
          9817]
          Length = 271

 Score = 44.6 bits (104), Expect = 0.087,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           VHS +S  +    L  I++K    +   I ITD 
Sbjct: 7  HVHSEFS-GDSKEKLEKIIEKAKELKMDEITITDH 40


>gi|254181096|ref|ZP_04887694.1| putative competence protein [Burkholderia pseudomallei 1655]
 gi|184211635|gb|EDU08678.1| putative competence protein [Burkholderia pseudomallei 1655]
          Length = 105

 Score = 44.6 bits (104), Expect = 0.088,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
           +L  I+G+G   A+ I++   A  PF    D   RV  K +  + +E L   G 
Sbjct: 31  ALRGIRGIGPAKAKAIVDERSAHGPFKDAADLARRV--KGMGGKTVERLQAEGL 82


>gi|288870549|ref|ZP_06114508.2| histidinol phosphatase [Clostridium hathewayi DSM 13479]
 gi|288866768|gb|EFC99066.1| histidinol phosphatase [Clostridium hathewayi DSM 13479]
          Length = 277

 Score = 44.6 bits (104), Expect = 0.089,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 17/42 (40%), Gaps = 4/42 (9%)

Query: 9  PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          P +    +H+ +S  +        +++       ++ ITD +
Sbjct: 15 PDY---HLHTDFS-GDSTTPPRAQIERAIQLGMDSLCITDHH 52


>gi|261253233|ref|ZP_05945806.1| PHP family hydrolase [Vibrio orientalis CIP 102891]
 gi|260936624|gb|EEX92613.1| PHP family hydrolase [Vibrio orientalis CIP 102891]
          Length = 288

 Score = 44.6 bits (104), Expect = 0.089,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L  H++ S  +G L  N ++D+  +     +AITD + +   
Sbjct: 5  LHSHTTAS--DGRLPPNELIDRALSFNLEVLAITDHDTVDGL 44


>gi|134046575|ref|YP_001098060.1| hypothetical protein MmarC5_1549 [Methanococcus maripaludis C5]
 gi|132664200|gb|ABO35846.1| PHP C-terminal domain protein [Methanococcus maripaludis C5]
          Length = 239

 Score = 44.6 bits (104), Expect = 0.089,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G L  + ++ +    +  A+ ITD 
Sbjct: 28 HTHTVFS--DGELIPSELVRRAIVLEHRALGITDH 60


>gi|167563621|ref|ZP_02356537.1| hypothetical protein BoklE_13780 [Burkholderia oklahomensis EO147]
          Length = 105

 Score = 44.6 bits (104), Expect = 0.090,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
           +L  IKG+G   AR I++   A  P+    D   RV  K +  + +E L   G 
Sbjct: 31  ALRGIKGIGPAKARAIVDERTAHGPYKDAADLARRV--KGMGGKTVERLQAEGL 82


>gi|325263538|ref|ZP_08130272.1| PHP domain protein [Clostridium sp. D5]
 gi|324031247|gb|EGB92528.1| PHP domain protein [Clostridium sp. D5]
          Length = 317

 Score = 44.6 bits (104), Expect = 0.091,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 5  LEKSPSFV-HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          +EKS +F   L  H++ S  +GA +   ++ + AA     +A+TD + +
Sbjct: 1  MEKS-NFTCDLHTHTTRS--DGADTPMEVIQRAAALGVRVLALTDHDTV 46


>gi|260904106|ref|ZP_05912428.1| phosphotransferase domain-containing protein [Brevibacterium
          linens BL2]
          Length = 285

 Score = 44.6 bits (104), Expect = 0.091,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L VH+++S  +G  + + +L + + +    + +TD + 
Sbjct: 5  LHVHTAFS--DGTQTPSELLSEASMEGIDVLGVTDHDT 40


>gi|258406109|ref|YP_003198851.1| glycosyl transferase group 1 [Desulfohalobium retbaense DSM 5692]
 gi|257798336|gb|ACV69273.1| glycosyl transferase group 1 [Desulfohalobium retbaense DSM 5692]
          Length = 820

 Score = 44.6 bits (104), Expect = 0.091,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 12/56 (21%)

Query: 14 LQVHSSYS------LL------EGALSLNNILDKIAADQQPAIAITDTNNLFSALE 57
          L VHS +S      +L      E       + D         + ITD N L  +LE
Sbjct: 9  LHVHSKFSKRPSQWILQKINCPESFTEPKRLYDIARQRGMDLVTITDHNTLAGSLE 64


>gi|91228666|ref|ZP_01262581.1| putative metal-dependent phosphoesterase YciV [Vibrio
          alginolyticus 12G01]
 gi|91187787|gb|EAS74104.1| putative metal-dependent phosphoesterase YciV [Vibrio
          alginolyticus 12G01]
          Length = 285

 Score = 44.6 bits (104), Expect = 0.091,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L  H++ S  +G L   +++++  +     +AITD + +   
Sbjct: 5  LHSHTTAS--DGRLEPKDLVERALSFDIEVLAITDHDTVDGL 44


>gi|221633160|ref|YP_002522385.1| phosphoesterase PHP, N-terminal [Thermomicrobium roseum DSM 5159]
 gi|221156732|gb|ACM05859.1| phosphoesterase PHP, N-terminal [Thermomicrobium roseum DSM 5159]
          Length = 321

 Score = 44.6 bits (104), Expect = 0.091,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 99/337 (29%), Gaps = 64/337 (18%)

Query: 11  FVH----LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           F H    L +H+  S  +G  ++  ++D +A  +    A+ D + + +  +  +     G
Sbjct: 24  FAHDAVDLHLHTLAS--DGRWTVAELIDYLATKRFRVAALCDHDTMAAVDDAIELGKKYG 81

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           +  + G ++     D                           +  L+      Y +D   
Sbjct: 82  LVIVPGVEVTTRWADRQ-------------------------WHLLV------YGVDPAL 110

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            + R   + L E+       L   ++  I           A + ++  + L    + + L
Sbjct: 111 PTARAFRAILDELADR----LWAEAARAIVALERNGYRLRALREIVGGRPLRPHHVLLAL 166

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            +         +   ++      P+      + LS     AH+         +++   R 
Sbjct: 167 IQEGS--ATNLATAHEITKRLGEPMTV---DVPLSRAVAAAHEA----GGICILAHPGRD 217

Query: 247 RVTPDHYLKNRSEMVS-------IFSDLPEALENTVEIARRCS-FILQVHAPILPRFIEK 298
                  ++    M                 LE T  +   C+ F L   A         
Sbjct: 218 DGAGVLTVETLERMRMEIPIDGLEAHYRSHTLEQTETLRAWCARFGLLASAGSDSHAPGH 277

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
             D I     +      +AGL  R A   +++   ++
Sbjct: 278 PVDPIPYPAVS------IAGLLRRFAIDVLSEEDVSE 308


>gi|149928515|ref|ZP_01916747.1| PHP-like protein [Limnobacter sp. MED105]
 gi|149822775|gb|EDM82030.1| PHP-like protein [Limnobacter sp. MED105]
          Length = 232

 Score = 44.6 bits (104), Expect = 0.091,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L  HS+ S  +G L    +  + AA+     ++TD + +   
Sbjct: 24 LHCHSTVS--DGTLEPEELAARAAANGVQIWSLTDHDEVSGL 63


>gi|255524344|ref|ZP_05391302.1| PHP domain protein [Clostridium carboxidivorans P7]
 gi|296185299|ref|ZP_06853709.1| PHP domain protein [Clostridium carboxidivorans P7]
 gi|255512027|gb|EET88309.1| PHP domain protein [Clostridium carboxidivorans P7]
 gi|296050133|gb|EFG89557.1| PHP domain protein [Clostridium carboxidivorans P7]
          Length = 256

 Score = 44.6 bits (104), Expect = 0.095,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 7  KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           S  F+ L  H+ +S  +G  S   I++        AI I+D 
Sbjct: 4  SSIDFMDLHNHTLWS--DGIHSPEKIIENAIEHNLTAIGISDH 44


>gi|167570497|ref|ZP_02363371.1| hypothetical protein BoklC_11679 [Burkholderia oklahomensis
          C6786]
          Length = 279

 Score = 44.6 bits (104), Expect = 0.095,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS  ++  +  A      A+TD + +       + A A G++ + G 
Sbjct: 8  LHCHSNVS--DGQLSPADVARRAHAGGVTLWALTDHDEVGGQRAARETAEALGMRYLHGV 65

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 66 EISVTWASR 74


>gi|84490272|ref|YP_448504.1| metal-dependent phosphoesterase [Methanosphaera stadtmanae DSM
          3091]
 gi|84373591|gb|ABC57861.1| predicted metal-dependent phosphoesterase [Methanosphaera
          stadtmanae DSM 3091]
          Length = 218

 Score = 44.6 bits (104), Expect = 0.095,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           +HS YS  +    L NI+         AIAITD +
Sbjct: 6  HIHSKYS-KDSITPLENIIKYSKKIGLNAIAITDHD 40


>gi|83718855|ref|YP_442182.1| hypothetical protein BTH_I1645 [Burkholderia thailandensis E264]
 gi|167581060|ref|ZP_02373934.1| hypothetical protein BthaT_23137 [Burkholderia thailandensis TXDOH]
 gi|167619139|ref|ZP_02387770.1| hypothetical protein BthaB_22741 [Burkholderia thailandensis Bt4]
 gi|257138371|ref|ZP_05586633.1| competence protein ComE [Burkholderia thailandensis E264]
 gi|83652680|gb|ABC36743.1| conserved hypothetical protein [Burkholderia thailandensis E264]
          Length = 105

 Score = 44.6 bits (104), Expect = 0.095,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
           +L  I+G+G   A+ I++   A  PF    D   RV  K +  + +E L   G 
Sbjct: 31  ALRGIRGIGPAKAKAIVDERSAHGPFKDAADLSRRV--KGMGGKTVERLQAEGL 82


>gi|271967572|ref|YP_003341768.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270510747|gb|ACZ89025.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 560

 Score = 44.6 bits (104), Expect = 0.097,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H+   L +G  SL +++    A      A+TD 
Sbjct: 331 LHTHTD--LTDGIASLEDMVAAARARGHSYYAVTDH 364


>gi|323356521|ref|YP_004222917.1| histidinol phosphatase [Microbacterium testaceum StLB037]
 gi|323272892|dbj|BAJ73037.1| histidinol phosphatase [Microbacterium testaceum StLB037]
          Length = 330

 Score = 44.6 bits (104), Expect = 0.098,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G   +  +++   A     +A+TD 
Sbjct: 96  LHSHSEWS--DGVTPIEAMVEAGRALGHEYLALTDH 129


>gi|269837328|ref|YP_003319556.1| PHP domain-containing protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269786591|gb|ACZ38734.1| PHP domain protein [Sphaerobacter thermophilus DSM 20745]
          Length = 223

 Score = 44.6 bits (104), Expect = 0.098,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 60/204 (29%), Gaps = 32/204 (15%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+ +S  +G LS      +        + +TD   +    E  +   A   + II   
Sbjct: 6   HTHTFWS--DGELSPMEQARRAVQRGYRVLGLTDHVGVGGVPELIKALKAD--REIIERY 61

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             I +   +++T+      P      L                 + L  +          
Sbjct: 62  WPITVVVGVELTHVPAEAIPEAARFALDAGAEI-----------VVLHGETPVEP----- 105

Query: 135 WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR 194
            + E      I+     SG +D           + R    + +F     + +   RG+  
Sbjct: 106 -VPEGSNHAAII-----SGLVDVIGHPGHITEEDVREAAARDIF-----LEITSRRGH-S 153

Query: 195 YRESQVVQLAYTHELPLVATNNSL 218
                V +LA  +   ++  +++ 
Sbjct: 154 LTNGHVARLAQRYGAKMIVNSDTH 177


>gi|119469323|ref|ZP_01612262.1| hypothetical protein ATW7_07719 [Alteromonadales bacterium TW-7]
 gi|119447187|gb|EAW28456.1| hypothetical protein ATW7_07719 [Alteromonadales bacterium TW-7]
          Length = 284

 Score = 44.6 bits (104), Expect = 0.098,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H+++S  +G L++  +L++         AITD + + +         +  + 
Sbjct: 6  LHSHTTHS--DGHLTVEELLNRAVDKNINVFAITDHDTVAAIKPAQSFIKSENLP 58


>gi|123966195|ref|YP_001011276.1| metal-dependent phosphoesterase [Prochlorococcus marinus str. MIT
          9515]
 gi|123200561|gb|ABM72169.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Prochlorococcus marinus str. MIT 9515]
          Length = 215

 Score = 44.6 bits (104), Expect = 0.099,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          +   P  ++   H+ +S  +G+     +LD++  ++   IAITD + +
Sbjct: 15 INSCPHIINFHCHTKFS--DGSFEPEQLLDQVFINKLKFIAITDHHTV 60


>gi|33592113|ref|NP_879757.1| hypothetical protein BP0956 [Bordetella pertussis Tohama I]
 gi|33571757|emb|CAE41258.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
          Length = 162

 Score = 44.6 bits (104), Expect = 0.099,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
           L  ++GVG  TAR I+E       F SLED   RV      +  ++SL  AG 
Sbjct: 83  LETVRGVGPRTARVIIEERQRGGRFLSLEDLSERVSGIGHKK--MQSLQAAGL 133


>gi|18978234|ref|NP_579591.1| DNA-binding protein [Pyrococcus furiosus DSM 3638]
 gi|18894049|gb|AAL81986.1| DNA-binding protein [Pyrococcus furiosus DSM 3638]
          Length = 205

 Score = 44.6 bits (104), Expect = 0.099,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             +SL  + G+G      I+E    KPF+S ED   RV       +++   + 
Sbjct: 132 RLHSLELLPGIGKKHMWEIIEEREKKPFESFEDLKKRVKGLPDPVKMIAKRIL 184


>gi|293399764|ref|ZP_06643910.1| putative PHP domain protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306164|gb|EFE47407.1| putative PHP domain protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 501

 Score = 44.6 bits (104), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 12  VHLQVHSSYSLLEGAL-SLNNILDKIAADQQPAIAITDTNN 51
           V L +HS++S+  GA  ++  I           I+ITD N 
Sbjct: 213 VDLHIHSNFSI--GADYNIEEIFQSAKRQGLKTISITDLNT 251


>gi|295677270|ref|YP_003605794.1| helix-hairpin-helix motif protein [Burkholderia sp. CCGE1002]
 gi|295437113|gb|ADG16283.1| helix-hairpin-helix motif protein [Burkholderia sp. CCGE1002]
          Length = 124

 Score = 44.6 bits (104), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 13/80 (16%)

Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
           F        VNT   D          +L  IKG+G   A+ I++   A  PF    D   
Sbjct: 15  FGHAYAAVDVNTANED----------ALRGIKGIGPAKAKAIVDERNAHGPFKDAADLGK 64

Query: 871 RVDSKKLNRRVLESLVFAGA 890
           RV  K +    +E L   G 
Sbjct: 65  RV--KGMGGHTIERLQAEGL 82


>gi|317969875|ref|ZP_07971265.1| metal-dependent phosphoesterase [Synechococcus sp. CB0205]
          Length = 215

 Score = 44.6 bits (104), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL---EFSQKACAAGIQP 69
            H++ S  +G+L+   +  +  +     +A+TD ++  + L    + ++   +G+ P
Sbjct: 24 HCHTTNS--DGSLAPEALAQQALSIGLEHLAVTDHHSTAAFLAIQRWFEQQLESGMSP 79


>gi|227486304|ref|ZP_03916620.1| metal-dependent phosphoesterase [Anaerococcus lactolyticus ATCC
          51172]
 gi|227235715|gb|EEI85730.1| metal-dependent phosphoesterase [Anaerococcus lactolyticus ATCC
          51172]
          Length = 276

 Score = 44.6 bits (104), Expect = 0.10,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          +  L +H+S+S  +G   +  +++         +AITD +
Sbjct: 3  YADLHMHTSFS--DGDYDIKEVIEMAVGAGIKTMAITDHD 40


>gi|163803030|ref|ZP_02196916.1| putative metal-dependent phosphoesterase YciV [Vibrio sp. AND4]
 gi|159173204|gb|EDP58033.1| putative metal-dependent phosphoesterase YciV [Vibrio sp. AND4]
          Length = 285

 Score = 44.6 bits (104), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ-PIIG 72
           L  H++ S  +G  +  +++D+  +     +AITD + +       Q      +   II 
Sbjct: 5   LHSHTTAS--DGRFTPQDLVDRALSFDIEVLAITDHDTVDGLAPAKQYVEENNLPIKIIN 62

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
                 +  N  +   G    P  P++  L+   +
Sbjct: 63  GIEISTVWQNKDIHIVGLNIDPASPALAKLIQQQK 97


>gi|150019281|ref|YP_001311535.1| phosphotransferase domain-containing protein [Clostridium
          beijerinckii NCIMB 8052]
 gi|149905746|gb|ABR36579.1| PHP C-terminal domain protein [Clostridium beijerinckii NCIMB
          8052]
          Length = 230

 Score = 44.6 bits (104), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           +HS++S  +G  +   ++      +   I+ITD N+     E        G++ I G 
Sbjct: 8  HIHSTFS--DGKCTPRELVILSKKREVDIISITDHNSTSGLDEAVMAGENLGVRVIPGV 64


>gi|295676451|ref|YP_003604975.1| putative DNA uptake protein, ComEA-like protein [Burkholderia sp.
           CCGE1002]
 gi|295436294|gb|ADG15464.1| putative DNA uptake protein, ComEA-like protein [Burkholderia sp.
           CCGE1002]
          Length = 190

 Score = 44.6 bits (104), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
           +L ++KG+G   A+ I++  A + PF + +D  +RV  K + ++ +E+L  AG 
Sbjct: 33  ALESVKGIGPVHAKAILDERAKNGPFKNADDLAARV--KGIGQKSVENLEAAGL 84


>gi|256752810|ref|ZP_05493653.1| PHP domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748314|gb|EEU61375.1| PHP domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 247

 Score = 44.6 bits (104), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 6/59 (10%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSA-LEFSQKACAA 65
          F     H+ YS   G  ++ + + +        IAITD       +       +K    
Sbjct: 8  FADYHTHTVYS--HGKGTIEDNVKRAIEIGLEVIAITDHGPAHVFYGLRKRDFKKMREE 64


>gi|55274189|gb|AAV48975.1| polC [Weissella paramesenteroides]
          Length = 122

 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 49/147 (33%), Gaps = 25/147 (17%)

Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
           +  ++ +R  LE   P    +++ +  L     +                 +   LI+  
Sbjct: 1   EFGTAFVRGMLEETHPKNYSELLQISGLSHGTDVWRG--------------NADELIERG 46

Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
           +     VI  ++++M       G +   +  +   + K      + Q E   +G  +  I
Sbjct: 47  VATIGTVIGTRDKIMTDLINY-GVNPESSFQIMEKVRKGKGIVDEYQAEMRAAGVPEWYI 105

Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAA 768
              + +           Y F ++HAAA
Sbjct: 106 ESGLKIK----------YMFPRAHAAA 122


>gi|167037086|ref|YP_001664664.1| phosphotransferase domain-containing protein [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|167039822|ref|YP_001662807.1| phosphotransferase domain-containing protein [Thermoanaerobacter
          sp. X514]
 gi|166854062|gb|ABY92471.1| PHP C-terminal domain protein [Thermoanaerobacter sp. X514]
 gi|166855920|gb|ABY94328.1| PHP C-terminal domain protein [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
          Length = 243

 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 6/59 (10%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSA-LEFSQKACAA 65
          F     H+ YS   G  ++ + + +        IAITD       +       +K    
Sbjct: 4  FADYHTHTVYS--HGKGTIEDNVKRAIEIGLEVIAITDHGPAHVFYGLRKRDFKKMREE 60


>gi|254230517|ref|ZP_04923889.1| PHP domain containing protein [Vibrio sp. Ex25]
 gi|151936965|gb|EDN55851.1| PHP domain containing protein [Vibrio sp. Ex25]
          Length = 285

 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L  H++ S  +G L   +++++  +     +AITD + +   
Sbjct: 5  LHSHTTAS--DGRLEPKDLVERALSFDIEVLAITDHDTVDGL 44


>gi|159905210|ref|YP_001548872.1| hypothetical protein MmarC6_0823 [Methanococcus maripaludis C6]
 gi|159886703|gb|ABX01640.1| PHP domain protein [Methanococcus maripaludis C6]
          Length = 239

 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G L  + ++ +    +  A+ ITD 
Sbjct: 28 HTHTVFS--DGELIPSELVRRAIVLEHRALGITDH 60


>gi|119898406|ref|YP_933619.1| hypothetical protein azo2115 [Azoarcus sp. BH72]
 gi|119670819|emb|CAL94732.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 283

 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          V L  HS+ S  +G LS   ++ +   +    +A+TD +
Sbjct: 8  VDLHCHSTVS--DGWLSPEEVVGRAHRNGADLLALTDHD 44


>gi|53720118|ref|YP_109104.1| hypothetical protein BPSL2508 [Burkholderia pseudomallei K96243]
 gi|53724779|ref|YP_102233.1| competence protein ComE [Burkholderia mallei ATCC 23344]
 gi|67642907|ref|ZP_00441658.1| competence protein ComE [Burkholderia mallei GB8 horse 4]
 gi|76808771|ref|YP_334364.1| competence protein ComE [Burkholderia pseudomallei 1710b]
 gi|121598591|ref|YP_993866.1| competence protein ComE [Burkholderia mallei SAVP1]
 gi|124385920|ref|YP_001026929.1| competence protein ComE [Burkholderia mallei NCTC 10229]
 gi|126441341|ref|YP_001059894.1| putative competence protein [Burkholderia pseudomallei 668]
 gi|126449015|ref|YP_001079784.1| competence protein ComE [Burkholderia mallei NCTC 10247]
 gi|126452906|ref|YP_001067183.1| putative competence protein [Burkholderia pseudomallei 1106a]
 gi|166999741|ref|ZP_02265575.1| competence protein ComE [Burkholderia mallei PRL-20]
 gi|167720659|ref|ZP_02403895.1| hypothetical protein BpseD_16742 [Burkholderia pseudomallei DM98]
 gi|167739646|ref|ZP_02412420.1| hypothetical protein Bpse14_16397 [Burkholderia pseudomallei 14]
 gi|167816851|ref|ZP_02448531.1| hypothetical protein Bpse9_17057 [Burkholderia pseudomallei 91]
 gi|167825252|ref|ZP_02456723.1| hypothetical protein Bpseu9_16393 [Burkholderia pseudomallei 9]
 gi|167846755|ref|ZP_02472263.1| hypothetical protein BpseB_15845 [Burkholderia pseudomallei B7210]
 gi|167895343|ref|ZP_02482745.1| hypothetical protein Bpse7_16477 [Burkholderia pseudomallei 7894]
 gi|167903729|ref|ZP_02490934.1| hypothetical protein BpseN_15857 [Burkholderia pseudomallei NCTC
           13177]
 gi|167911978|ref|ZP_02499069.1| hypothetical protein Bpse112_15908 [Burkholderia pseudomallei 112]
 gi|167919969|ref|ZP_02507060.1| hypothetical protein BpseBC_15589 [Burkholderia pseudomallei
           BCC215]
 gi|217420736|ref|ZP_03452241.1| competence protein homolog [Burkholderia pseudomallei 576]
 gi|226197828|ref|ZP_03793402.1| competence protein homolog [Burkholderia pseudomallei Pakistan 9]
 gi|237813288|ref|YP_002897739.1| competence protein ComE [Burkholderia pseudomallei MSHR346]
 gi|242317006|ref|ZP_04816022.1| competence protein homolog [Burkholderia pseudomallei 1106b]
 gi|254176960|ref|ZP_04883617.1| competence protein ComE [Burkholderia mallei ATCC 10399]
 gi|254191930|ref|ZP_04898430.1| putative competence protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254195647|ref|ZP_04902074.1| putative competence protein [Burkholderia pseudomallei S13]
 gi|254203917|ref|ZP_04910277.1| competence protein ComE [Burkholderia mallei FMH]
 gi|254208897|ref|ZP_04915245.1| competence protein ComE [Burkholderia mallei JHU]
 gi|254259982|ref|ZP_04951036.1| competence protein homolog [Burkholderia pseudomallei 1710a]
 gi|254295629|ref|ZP_04963087.1| putative competence protein [Burkholderia pseudomallei 406e]
 gi|254360047|ref|ZP_04976317.1| competence protein ComE [Burkholderia mallei 2002721280]
 gi|52210532|emb|CAH36515.1| putative exported protein [Burkholderia pseudomallei K96243]
 gi|52428202|gb|AAU48795.1| competence protein ComE [Burkholderia mallei ATCC 23344]
 gi|76578224|gb|ABA47699.1| competence protein ComE [Burkholderia pseudomallei 1710b]
 gi|121227401|gb|ABM49919.1| competence protein ComE [Burkholderia mallei SAVP1]
 gi|124293940|gb|ABN03209.1| competence protein ComE [Burkholderia mallei NCTC 10229]
 gi|126220834|gb|ABN84340.1| putative competence protein [Burkholderia pseudomallei 668]
 gi|126226548|gb|ABN90088.1| competence protein homolog [Burkholderia pseudomallei 1106a]
 gi|126241885|gb|ABO04978.1| competence protein ComE [Burkholderia mallei NCTC 10247]
 gi|147745429|gb|EDK52509.1| competence protein ComE [Burkholderia mallei FMH]
 gi|147750773|gb|EDK57842.1| competence protein ComE [Burkholderia mallei JHU]
 gi|148029287|gb|EDK87192.1| competence protein ComE [Burkholderia mallei 2002721280]
 gi|157805532|gb|EDO82702.1| putative competence protein [Burkholderia pseudomallei 406e]
 gi|157987752|gb|EDO95517.1| putative competence protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|160698001|gb|EDP87971.1| competence protein ComE [Burkholderia mallei ATCC 10399]
 gi|169652393|gb|EDS85086.1| putative competence protein [Burkholderia pseudomallei S13]
 gi|217396148|gb|EEC36165.1| competence protein homolog [Burkholderia pseudomallei 576]
 gi|225930016|gb|EEH26029.1| competence protein homolog [Burkholderia pseudomallei Pakistan 9]
 gi|237503697|gb|ACQ96015.1| competence protein ComE [Burkholderia pseudomallei MSHR346]
 gi|238524124|gb|EEP87559.1| competence protein ComE [Burkholderia mallei GB8 horse 4]
 gi|242140245|gb|EES26647.1| competence protein homolog [Burkholderia pseudomallei 1106b]
 gi|243064233|gb|EES46419.1| competence protein ComE [Burkholderia mallei PRL-20]
 gi|254218671|gb|EET08055.1| competence protein homolog [Burkholderia pseudomallei 1710a]
          Length = 105

 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
           +L  I+G+G   A+ I++   A  PF    D   RV  K +  + +E L   G 
Sbjct: 31  ALRGIRGIGPAKAKAIVDERSAHGPFKDAADLARRV--KGMGGKTVERLQAEGL 82


>gi|260434650|ref|ZP_05788620.1| PHP domain protein [Synechococcus sp. WH 8109]
 gi|260412524|gb|EEX05820.1| PHP domain protein [Synechococcus sp. WH 8109]
          Length = 215

 Score = 44.2 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            H+  S  +G+L    ++ +        +A+TD ++
Sbjct: 24 HCHTVCS--DGSLEPIKLIQQATERGLKHLAVTDHHS 58


>gi|226357870|ref|YP_002787610.1| PHP-like protein [Deinococcus deserti VCD115]
 gi|226320113|gb|ACO48106.1| putative PHP-like protein [Deinococcus deserti VCD115]
          Length = 472

 Score = 44.2 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            L  H+ +S  +G  +   +           +A+TD 
Sbjct: 151 ELHAHTHHS--DGRPTPGELAGAARRAGLDFVALTDH 185


>gi|157370906|ref|YP_001478895.1| phosphotransferase domain-containing protein [Serratia
          proteamaculans 568]
 gi|157322670|gb|ABV41767.1| PHP domain protein [Serratia proteamaculans 568]
          Length = 295

 Score = 44.2 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 1  LTQYLEKSPSFV--HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          +T    +  +F    L  H++ S  +G L+   ++ +    +   +AITD +     
Sbjct: 1  MTDSSPQPSAFTLYDLHSHTTAS--DGYLTPAQLVQRAVEMRVGVLAITDHDTTSGL 55


>gi|283778801|ref|YP_003369556.1| PHP domain-containing protein [Pirellula staleyi DSM 6068]
 gi|283437254|gb|ADB15696.1| PHP domain protein [Pirellula staleyi DSM 6068]
          Length = 578

 Score = 44.2 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+  +  +G  S++ +     A     IAITD 
Sbjct: 346 LHMHT--TATDGNNSIDEMATAARARGMQYIAITDH 379


>gi|91774321|ref|YP_567013.1| PHP-like protein [Methanococcoides burtonii DSM 6242]
 gi|91713336|gb|ABE53263.1| phosphoesterase [Methanococcoides burtonii DSM 6242]
          Length = 223

 Score = 44.2 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L VHS +S  +      +IL+    +    +AI D + 
Sbjct: 5  LHVHSWFS-KDSNSDPASILEYAKMNGLDGVAICDHDT 41


>gi|300915394|ref|ZP_07132708.1| PHP domain protein [Thermoanaerobacter sp. X561]
 gi|307724854|ref|YP_003904605.1| PHP domain-containing protein [Thermoanaerobacter sp. X513]
 gi|320115501|ref|YP_004185660.1| PHP domain-containing protein [Thermoanaerobacter brockii subsp.
          finnii Ako-1]
 gi|300888670|gb|EFK83818.1| PHP domain protein [Thermoanaerobacter sp. X561]
 gi|307581915|gb|ADN55314.1| PHP domain protein [Thermoanaerobacter sp. X513]
 gi|319928592|gb|ADV79277.1| PHP domain protein [Thermoanaerobacter brockii subsp. finnii
          Ako-1]
          Length = 247

 Score = 44.2 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 6/59 (10%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSA-LEFSQKACAA 65
          F     H+ YS   G  ++ + + +        IAITD       +       +K    
Sbjct: 8  FADYHTHTVYS--HGKGTIEDNVKRAIEIGLEVIAITDHGPAHVFYGLRKRDFKKMREE 64


>gi|254251990|ref|ZP_04945308.1| Phosphoesterase PHP [Burkholderia dolosa AUO158]
 gi|124894599|gb|EAY68479.1| Phosphoesterase PHP [Burkholderia dolosa AUO158]
          Length = 279

 Score = 44.2 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS  ++  +  A      A+TD + +        +A A G++ + G 
Sbjct: 8  LHCHSNVS--DGLLSPVDVARRAHAGGVTLWALTDHDEIGGQAAARSEAEALGMRYLCGV 65

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 66 EISVTWASR 74


>gi|145592764|ref|YP_001157061.1| hypothetical protein Strop_0198 [Salinispora tropica CNB-440]
 gi|145302101|gb|ABP52683.1| PHP C-terminal domain protein [Salinispora tropica CNB-440]
          Length = 356

 Score = 44.2 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +HS +S  +G  S+  +           + +TD 
Sbjct: 107 HIHSDWS--DGGSSIEEMALTAVELGHEYLVLTDH 139


>gi|330470618|ref|YP_004408361.1| hypothetical protein VAB18032_03385 [Verrucosispora maris
           AB-18-032]
 gi|328813589|gb|AEB47761.1| hypothetical protein VAB18032_03385 [Verrucosispora maris
           AB-18-032]
          Length = 353

 Score = 44.2 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/259 (11%), Positives = 66/259 (25%), Gaps = 28/259 (10%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPI 70
             HS +S  +G   +  +           + +TD      +          A     Q  
Sbjct: 106 HTHSDWS--DGGSPIEEMALAAVELGHEYLVLTDH-----SPRLKVARGLTADRLRRQLD 158

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
              QL+  + +  ++    +       S+       E   RL  +V  ++         +
Sbjct: 159 HVAQLNEALPEGFRILTGIEVDILADGSL---DQEEELLARLDVVVGSVHS-GLNDDRAK 214

Query: 131 ICLSWLQEIGTEGLIMLTGGSS-----------GPIDRAFFFN-SSQVAEKRLLTFKKLF 178
           +    L  +    L +L   +            GP DR        +        F    
Sbjct: 215 MTRRMLTAVANPHLDILGHCTGRMVSSRPAGVTGPGDRGHRARTRPESDFDADAVFAACV 274

Query: 179 GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +R  V +   R   +    ++++ A           ++    + D++      A     
Sbjct: 275 ENRTAVEINS-RPERQDPPKRLIRRALEAGCLFAIDTDAHAPGQLDWQRFGCERAARCGV 333

Query: 239 VVSQKDRPRVTPDHYLKNR 257
              +        D      
Sbjct: 334 PADRVINTWTATDLTAWTT 352


>gi|209522309|ref|ZP_03270934.1| PHP domain protein [Burkholderia sp. H160]
 gi|209497254|gb|EDZ97484.1| PHP domain protein [Burkholderia sp. H160]
          Length = 276

 Score = 44.2 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  +  ++  +  A+     A+TD + +    E    A A G+  + G 
Sbjct: 5   LHCHSTVS--DGQFAPGDVARRAHANGVTLWALTDHDEVAGQHEARATAEALGMDYLGGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           ++ +                 +   I  L  T +G
Sbjct: 63  EISVTWAGRTVHIVGLGIDPTSQILIDGLARTRDG 97


>gi|126336795|ref|XP_001374259.1| PREDICTED: similar to KIAA1706 protein [Monodelphis domestica]
          Length = 340

 Score = 44.2 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L  ++GV    A  I+E   +  PF S+ED          +   L   +FA A+     S
Sbjct: 135 LRGLRGVSERLALAIVEHRQERGPFRSVEDLLRLDGVSPASLDKLRPQLFAAAVPSAERS 194

Query: 898 R 898
           R
Sbjct: 195 R 195


>gi|158333742|ref|YP_001514914.1| phospholipase D/transphosphatidylase [Acaryochloris marina
           MBIC11017]
 gi|158303983|gb|ABW25600.1| phospholipase D/Transphosphatidylase [Acaryochloris marina
           MBIC11017]
          Length = 562

 Score = 44.2 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
              +   P VN+  V+      +    L A+ GVG   A  I+E   ++ F SL DF  
Sbjct: 490 LGKEQTAP-VNSSLVNLNTASQQE---LEALPGVGPKLAARIIEVRQERLFTSLADFDQ 544


>gi|153940346|ref|YP_001392942.1| phosphotransferase domain-containing protein [Clostridium
          botulinum F str. Langeland]
 gi|152936242|gb|ABS41740.1| PHP domain protein [Clostridium botulinum F str. Langeland]
 gi|295320920|gb|ADG01298.1| PHP domain protein [Clostridium botulinum F str. 230613]
          Length = 225

 Score = 44.2 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 15 QVH-SSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +H S YS L+  +SL  I+ +        + ITD 
Sbjct: 6  HIHESKYS-LDSEISLEEIVKRGKEIGLDGVCITDH 40


>gi|186475518|ref|YP_001856988.1| hypothetical protein Bphy_0753 [Burkholderia phymatum STM815]
 gi|184191977|gb|ACC69942.1| conserved hypothetical protein [Burkholderia phymatum STM815]
          Length = 122

 Score = 44.2 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L  IKG+G   A+ I++   A  PF    D   RV     +
Sbjct: 31  ALRGIKGIGPAKAKAILDERAAHGPFKDAADLSKRVKGLGGH 72


>gi|315503313|ref|YP_004082200.1| php domain protein [Micromonospora sp. L5]
 gi|315409932|gb|ADU08049.1| PHP domain protein [Micromonospora sp. L5]
          Length = 356

 Score = 44.2 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 62/227 (27%), Gaps = 26/227 (11%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPI 70
             HS +S  +G   +  +           + +TD      +   +      A     Q  
Sbjct: 107 HTHSDWS--DGGSPIEEMALAAVELGHEYMVLTDH-----SPRLTVARGLTAERLRKQLD 159

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
               ++  +    ++    +       S+       +   RL  +V  ++         +
Sbjct: 160 HVAAVNEALPKGFRILTGIEVDILADGSL---DQDEDLLARLDVVVGSVHS-GLNDDRAK 215

Query: 131 ICLSWLQEIGTEGLIMLTGGSS-----------GPIDRAFFFNSSQVAEKRLLTFKKLFG 179
           +    L  I    L +L   +            GP DR     + + +E           
Sbjct: 216 MTRRMLTAIANPHLDILGHCTGRMVSSRPAGVTGPGDRGHRARTRKESEFDADAVFAACA 275

Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
           +         R   +    ++++LA           ++    + D++
Sbjct: 276 EHDVAVEINSRPERQDPPKRLIRLALEAGCRFAIDTDAHAPGQLDWQ 322


>gi|170693726|ref|ZP_02884884.1| helix-hairpin-helix motif [Burkholderia graminis C4D1M]
 gi|170141508|gb|EDT09678.1| helix-hairpin-helix motif [Burkholderia graminis C4D1M]
          Length = 121

 Score = 44.2 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L  +KG+G   A+ I+E   A  PF    D   RV     +
Sbjct: 31  ALRGVKGIGPAKAKAILEERAAHGPFKDPADLGKRVKGMGGH 72


>gi|320008718|gb|ADW03568.1| PHP domain protein [Streptomyces flavogriseus ATCC 33331]
          Length = 288

 Score = 44.2 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++   AA     +A+TD + +    E +  A   G+  + G 
Sbjct: 5  LHTHSTAS--DGTDTPAELVANAAAAGLDVVALTDHDTVGGHAEAA-AALPEGLTLVTGA 61

Query: 74 QLDI 77
          +L  
Sbjct: 62 ELSC 65


>gi|160936596|ref|ZP_02083963.1| hypothetical protein CLOBOL_01486 [Clostridium bolteae ATCC
          BAA-613]
 gi|158440387|gb|EDP18132.1| hypothetical protein CLOBOL_01486 [Clostridium bolteae ATCC
          BAA-613]
          Length = 208

 Score = 44.2 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          HL   + YS  +  +SL  I+         A+ ITD +++
Sbjct: 6  HLHECT-YSS-DSKISLEEIVTTARGRGLDAVCITDHDSM 43


>gi|134277660|ref|ZP_01764375.1| competence protein-like protein [Burkholderia pseudomallei 305]
 gi|134251310|gb|EBA51389.1| competence protein-like protein [Burkholderia pseudomallei 305]
          Length = 105

 Score = 44.2 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L  I+G+G   A+ I++   A  PF    D   RV  K +  + +E L   G
Sbjct: 31  ALRGIRGIGPAKAKAIVDERSAHGPFKDAADLARRV--KGMGGKTVERLQAEG 81


>gi|108802024|ref|YP_642221.1| hypothetical protein Mmcs_5061 [Mycobacterium sp. MCS]
 gi|119871176|ref|YP_941128.1| hypothetical protein Mkms_5149 [Mycobacterium sp. KMS]
 gi|108772443|gb|ABG11165.1| PHP-like protein [Mycobacterium sp. MCS]
 gi|119697265|gb|ABL94338.1| PHP C-terminal domain protein [Mycobacterium sp. KMS]
          Length = 334

 Score = 44.2 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS++S  +G+  +  ++            +TD 
Sbjct: 100 LHVHSNWS--DGSAPIEEMMLAARDLGHEYCVLTDH 133


>gi|284165904|ref|YP_003404183.1| DNA-directed DNA polymerase [Haloterrigena turkmenica DSM 5511]
 gi|284015559|gb|ADB61510.1| DNA-directed DNA polymerase [Haloterrigena turkmenica DSM 5511]
          Length = 583

 Score = 44.2 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H+ +S  +G  ++  ++D  A       A+ D 
Sbjct: 353 LHTHTEWS--DGNTTIEAMVDAAAEMGYDYYAVADH 386


>gi|167468904|ref|ZP_02333608.1| hypothetical protein YpesF_13629 [Yersinia pestis FV-1]
          Length = 180

 Score = 44.2 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  H++ S  +G L+ + ++ + A  +   +AITD + 
Sbjct: 31 LHSHTTAS--DGTLTPSELVIRAAQMRVGVLAITDHDT 66


>gi|33865776|ref|NP_897335.1| hypothetical protein SYNW1242 [Synechococcus sp. WH 8102]
 gi|33632946|emb|CAE07757.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 215

 Score = 44.2 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            H+  S  +G+L    ++ + +      +A+TD ++
Sbjct: 24 HCHTICS--DGSLEPLELIRQASERGLSHLAVTDHHS 58


>gi|78222692|ref|YP_384439.1| glycosyl transferase, group 1:PHP-like [Geobacter metallireducens
          GS-15]
 gi|78193947|gb|ABB31714.1| Glycosyl transferase, group 1:PHP-like protein [Geobacter
          metallireducens GS-15]
          Length = 803

 Score = 44.2 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 12/56 (21%)

Query: 14 LQVHSSYS------LLE------GALSLNNILDKIAADQQPAIAITDTNNLFSALE 57
          L VHSS+S       L          S  +I D   A     +AITD N +  ALE
Sbjct: 9  LHVHSSHSNKPTYWALRKFKCPESFTSPRHIYDTAKAAGMDYVAITDHNTITGALE 64


>gi|170755093|ref|YP_001783223.1| phosphotransferase domain-containing protein [Clostridium
          botulinum B1 str. Okra]
 gi|169120305|gb|ACA44141.1| PHP domain protein [Clostridium botulinum B1 str. Okra]
          Length = 225

 Score = 44.2 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 15 QVH-SSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +H S YS L+  +SL  I+ +        + ITD 
Sbjct: 6  HIHESKYS-LDSEISLEEIVKRGKEIGLDGVCITDH 40


>gi|186475705|ref|YP_001857175.1| putative DNA uptake protein, ComEA-like protein [Burkholderia
           phymatum STM815]
 gi|184192164|gb|ACC70129.1| putative DNA uptake protein, ComEA-like protein [Burkholderia
           phymatum STM815]
          Length = 186

 Score = 44.2 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN-RRVLES 884
           +L ++KG+G   A+ I++    + PF   +D  +RV        + LE+
Sbjct: 33  ALESVKGIGPVHAKAIIDERTKNGPFKDADDLANRVKGIGQKSVKNLEA 81


>gi|148381525|ref|YP_001256066.1| PHP domain protein [Clostridium botulinum A str. ATCC 3502]
 gi|153931689|ref|YP_001385899.1| phosphotransferase domain-containing protein [Clostridium
          botulinum A str. ATCC 19397]
 gi|153937841|ref|YP_001389306.1| phosphotransferase domain-containing protein [Clostridium
          botulinum A str. Hall]
 gi|148291009|emb|CAL85146.1| putative phosphoesterase [Clostridium botulinum A str. ATCC 3502]
 gi|152927733|gb|ABS33233.1| PHP domain protein [Clostridium botulinum A str. ATCC 19397]
 gi|152933755|gb|ABS39254.1| PHP domain protein [Clostridium botulinum A str. Hall]
 gi|322807910|emb|CBZ05485.1| hypothetical protein H04402_03687 [Clostridium botulinum H04402
          065]
          Length = 225

 Score = 44.2 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 15 QVH-SSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +H S YS L+  +SL  I+ +        + ITD 
Sbjct: 6  HIHESKYS-LDSEISLEEIVKRGKEIGLDGVCITDH 40


>gi|257464269|ref|ZP_05628648.1| HisJ family histidinol phosphate phosphatase [Fusobacterium sp.
          D12]
 gi|317061784|ref|ZP_07926269.1| histidinol phosphate phosphatase HisJ family [Fusobacterium sp.
          D12]
 gi|313687460|gb|EFS24295.1| histidinol phosphate phosphatase HisJ family [Fusobacterium sp.
          D12]
          Length = 267

 Score = 44.2 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +HS +S  + + +L  +++         IAITD 
Sbjct: 7  HIHSEFS-GDSSQNLGELIEHCIQLGLKEIAITDH 40


>gi|134299491|ref|YP_001112987.1| phosphotransferase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134052191|gb|ABO50162.1| PHP C-terminal domain protein [Desulfotomaculum reducens MI-1]
          Length = 569

 Score = 44.2 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  + AL +++I+++         AITD 
Sbjct: 340 LHIHTTWS--DSALEIDDIINRCREKGYSYAAITDH 373


>gi|300704490|ref|YP_003746093.1| hypothetical protein RCFBP_20294 [Ralstonia solanacearum
          CFBP2957]
 gi|299072154|emb|CBJ43486.1| conserved protein of unknown function, PHP domain-like [Ralstonia
          solanacearum CFBP2957]
          Length = 286

 Score = 44.2 bits (103), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 1  LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          + +    +P    L  HS+ S  +G L+   +  + AA      A+TD + +       +
Sbjct: 1  MLKRSASTPINADLHCHSTVS--DGLLAPREVAARAAAHGVTLWALTDHDEVGGQAAARE 58

Query: 61 KACAAGIQPIIGCQLDIDMQDN 82
           A + G+  + G ++ +     
Sbjct: 59 AAESLGMDYLPGVEISVTWAGR 80


>gi|323359562|ref|YP_004225958.1| metal-dependent phosphoesterase [Microbacterium testaceum
          StLB037]
 gi|323275933|dbj|BAJ76078.1| predicted metal-dependent phosphoesterase [Microbacterium
          testaceum StLB037]
          Length = 286

 Score = 44.2 bits (103), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS++S  +G  +   ++    +      A+TD +      E ++ A + G+  + G 
Sbjct: 13 LHLHSTHS--DGTEAPALVMAAAHSHGLRTAALTDHDTTSGWAEAAEAATSLGMTFVPGM 70


>gi|312144193|ref|YP_003995639.1| PHP domain protein [Halanaerobium sp. 'sapolanicus']
 gi|311904844|gb|ADQ15285.1| PHP domain protein [Halanaerobium sp. 'sapolanicus']
          Length = 246

 Score = 44.2 bits (103), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 14 LQVHSSYS----LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
          L +HS  S    LL   +S   I++K   +    +A+TD N+  +A  F        I  
Sbjct: 8  LHIHSVLSPCADLL---MSPAEIVNKAKKEGIEVLALTDHNSAANAEVFKYFCEQNNIFF 64

Query: 70 IIGC 73
          I   
Sbjct: 65 IPAM 68


>gi|126438003|ref|YP_001073694.1| hypothetical protein Mjls_5440 [Mycobacterium sp. JLS]
 gi|126237803|gb|ABO01204.1| PHP C-terminal domain protein [Mycobacterium sp. JLS]
          Length = 334

 Score = 44.2 bits (103), Expect = 0.13,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS++S  +G+  +  ++            +TD 
Sbjct: 100 LHVHSNWS--DGSAPIEEMMLAARDLGHEYCVLTDH 133


>gi|269987017|gb|EEZ93292.1| PHP domain protein [Candidatus Parvarchaeum acidiphilum ARMAN-4]
          Length = 568

 Score = 44.2 bits (103), Expect = 0.13,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH+  S  +G  SL  + +         +A+T+ 
Sbjct: 340 LHVHTKDS--DGVNSLEEMAEAAKKRGLKYLALTNH 373


>gi|290559667|gb|EFD92993.1| conserved hypothetical protein [Candidatus Parvarchaeum acidophilus
           ARMAN-5]
          Length = 190

 Score = 44.2 bits (103), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 14/101 (13%)

Query: 800 EKIKKFC--QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
           ++I       + +  +I     S+N              +S   + GVG    + I+E  
Sbjct: 85  DRIATIVKENEEKYIDIINKLGSINV-----------RLHSFHLLPGVGKKIVQKILEER 133

Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
               F S EDF  RV       + +E  +  G L+     R
Sbjct: 134 TKAKFKSYEDFNERVGFTSDIAKSIEDRI-MGELNGEDKYR 173


>gi|226951040|ref|YP_002806131.1| PHP domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|226843353|gb|ACO86019.1| PHP domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 225

 Score = 44.2 bits (103), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 15 QVH-SSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +H S YS L+  +SL  I+ +        + ITD 
Sbjct: 6  HIHESKYS-LDSEISLEEIVKRGKEIGLDGVCITDH 40


>gi|291566399|dbj|BAI88671.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 551

 Score = 44.2 bits (103), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
           L ++ G+G   A+ I+EA + +PF SL+D         +  + +E 
Sbjct: 502 LESLPGIGPALAQRIIEARSQQPFTSLDDVTR---VSGIGPKTIER 544


>gi|154509569|ref|ZP_02045211.1| hypothetical protein ACTODO_02101 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799203|gb|EDN81623.1| hypothetical protein ACTODO_02101 [Actinomyces odontolyticus ATCC
           17982]
          Length = 282

 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 73/252 (28%), Gaps = 26/252 (10%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             HS+YS  +G  +   +L   A      IA+TD +      E +      G+  I G +
Sbjct: 8   HTHSAYS--DGTDTPAQLLAIAAQAGLDTIALTDHDTTIGWDEAAAAVADTGVSLIRGAE 65

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
           +       + +        P  P +V          R         +++       I L 
Sbjct: 66  MSCS-SSGITVHLLAYLFDPASPGLV----DNFRRTREDRETRAARMVENLSADYPITLD 120

Query: 135 WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA----EKRLLTFKKLFGDRLYVNLQRHR 190
            +     EG         GP+ R    ++   A    ++     + L     Y     H 
Sbjct: 121 DVLAFAPEG---------GPVGRPHIADALVAAGAFPDRSAAFVQALHPSGPY--YVHHW 169

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSE--EDYEAHDVLMAVAHSTVVSQKDRPRV 248
             D     + V+ A    +P++A   +        +    D+  A         +D    
Sbjct: 170 APDPVEAVRCVRKA--GGVPVLAHPRARKRQRLLPEAVIADMAEAGLFGIERDHRDHAPE 227

Query: 249 TPDHYLKNRSEM 260
                 +   EM
Sbjct: 228 DRADVERMAREM 239


>gi|156938222|ref|YP_001436018.1| aspartyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I]
 gi|156567206|gb|ABU82611.1| aspartyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I]
          Length = 453

 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 12/61 (19%)

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            Y+ +L         E    + G  +R+A  V + +        ++ ++   + +   +  
Sbjct: 3    YRDLL-------VAEITPEMEGRRVRVAGWVHAVRSIG-----KLAFLILRDFSGTIQVT 50

Query: 1031 F 1031
            F
Sbjct: 51   F 51


>gi|293604183|ref|ZP_06686591.1| competence protein ComE [Achromobacter piechaudii ATCC 43553]
 gi|292817408|gb|EFF76481.1| competence protein ComE [Achromobacter piechaudii ATCC 43553]
          Length = 176

 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRV 881
           L  I+G+G  TA  I+ E      FDS ED   RV      +  
Sbjct: 88  LETIRGIGPRTAEIIINERERGGRFDSFEDLADRVRGIGEKKAQ 131


>gi|170024276|ref|YP_001720781.1| phosphotransferase domain-containing protein [Yersinia
          pseudotuberculosis YPIII]
 gi|169750810|gb|ACA68328.1| PHP domain protein [Yersinia pseudotuberculosis YPIII]
          Length = 311

 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  H++ S  +G L+ + ++ + A  +   +AITD + 
Sbjct: 31 LHSHTTAS--DGTLTPSELVIRAAQMRVGVLAITDHDT 66


>gi|78066875|ref|YP_369644.1| PHP-like metal-dependent phosphoesterase [Burkholderia sp. 383]
 gi|77967620|gb|ABB09000.1| PHP-like metal-dependent phosphoesterase [Burkholderia sp. 383]
          Length = 279

 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS  ++  +  A      A+TD + +        +A A G++ + G 
Sbjct: 8  LHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHDEIGGQAAARSEAEALGMRYLSGV 65

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 66 EISVTWASR 74


>gi|320014875|gb|ADV98446.1| conserved protein [Yersinia pestis biovar Medievalis str. Harbin
          35]
          Length = 299

 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  H++ S  +G L+ + ++ + A  +   +AITD + 
Sbjct: 19 LHSHTTAS--DGTLTPSELVIRAAQMRVGVLAITDHDT 54


>gi|261210664|ref|ZP_05924956.1| PHP family hydrolase [Vibrio sp. RC341]
 gi|260840149|gb|EEX66729.1| PHP family hydrolase [Vibrio sp. RC341]
          Length = 290

 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++++  +     +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQELIERAVSFNIDVLAITDHDTVAALNDARAYIAQQQYPLQLVN 62


>gi|162421523|ref|YP_001606746.1| phosphotransferase domain-containing protein [Yersinia pestis
          Angola]
 gi|162354338|gb|ABX88286.1| PHP domain protein [Yersinia pestis Angola]
          Length = 310

 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  H++ S  +G L+ + ++ + A  +   +AITD + 
Sbjct: 28 LHSHTTAS--DGTLTPSELVIRAAQMRVGVLAITDHDT 63


>gi|282865438|ref|ZP_06274490.1| PHP domain protein [Streptomyces sp. ACTE]
 gi|282559911|gb|EFB65461.1| PHP domain protein [Streptomyces sp. ACTE]
          Length = 288

 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++ + AA     +A+TD + +    E +  A   G+  + G 
Sbjct: 5  LHTHSTAS--DGTDTPAELVARAAAAGLDVVALTDHDTVGGHAEAA-AALPEGLTLVPGA 61

Query: 74 QLDI 77
          +L  
Sbjct: 62 ELSC 65


>gi|45441808|ref|NP_993347.1| hypothetical protein YP_2008 [Yersinia pestis biovar Microtus
          str. 91001]
 gi|51596459|ref|YP_070650.1| hypothetical protein YPTB2133 [Yersinia pseudotuberculosis IP
          32953]
 gi|149365870|ref|ZP_01887905.1| hypothetical protein YPE_1048 [Yersinia pestis CA88-4125]
 gi|153948700|ref|YP_001400905.1| phosphotransferase domain-containing protein [Yersinia
          pseudotuberculosis IP 31758]
 gi|218929307|ref|YP_002347182.1| hypothetical protein YPO2211 [Yersinia pestis CO92]
 gi|229894894|ref|ZP_04510072.1| conserved protein [Yersinia pestis Pestoides A]
 gi|229897637|ref|ZP_04512793.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229898282|ref|ZP_04513429.1| conserved protein [Yersinia pestis biovar Orientalis str. India
          195]
 gi|229902141|ref|ZP_04517262.1| conserved protein [Yersinia pestis Nepal516]
 gi|45436670|gb|AAS62224.1| conserved hypothetical protein [Yersinia pestis biovar Microtus
          str. 91001]
 gi|51589741|emb|CAH21371.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
          32953]
 gi|115347918|emb|CAL20840.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|149292283|gb|EDM42357.1| hypothetical protein YPE_1048 [Yersinia pestis CA88-4125]
 gi|152960195|gb|ABS47656.1| PHP domain protein [Yersinia pseudotuberculosis IP 31758]
 gi|229681037|gb|EEO77132.1| conserved protein [Yersinia pestis Nepal516]
 gi|229688572|gb|EEO80641.1| conserved protein [Yersinia pestis biovar Orientalis str. India
          195]
 gi|229693974|gb|EEO84023.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701989|gb|EEO90010.1| conserved protein [Yersinia pestis Pestoides A]
          Length = 299

 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  H++ S  +G L+ + ++ + A  +   +AITD + 
Sbjct: 19 LHSHTTAS--DGTLTPSELVIRAAQMRVGVLAITDHDT 54


>gi|22125942|ref|NP_669365.1| hypothetical protein y2052 [Yersinia pestis KIM 10]
 gi|108807564|ref|YP_651480.1| hypothetical protein YPA_1569 [Yersinia pestis Antiqua]
 gi|108811840|ref|YP_647607.1| hypothetical protein YPN_1678 [Yersinia pestis Nepal516]
 gi|145598221|ref|YP_001162297.1| hypothetical protein YPDSF_0924 [Yersinia pestis Pestoides F]
 gi|165927360|ref|ZP_02223192.1| PHP domain protein [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|165938264|ref|ZP_02226823.1| PHP domain protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|166010684|ref|ZP_02231582.1| PHP domain protein [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166210749|ref|ZP_02236784.1| PHP domain protein [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|167400776|ref|ZP_02306282.1| PHP domain protein [Yersinia pestis biovar Antiqua str.
          UG05-0454]
 gi|167420381|ref|ZP_02312134.1| PHP domain protein [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167424991|ref|ZP_02316744.1| PHP domain protein [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|186895508|ref|YP_001872620.1| phosphotransferase domain-containing protein [Yersinia
          pseudotuberculosis PB1/+]
 gi|270490616|ref|ZP_06207690.1| PHP domain protein [Yersinia pestis KIM D27]
 gi|294503751|ref|YP_003567813.1| hypothetical protein YPZ3_1641 [Yersinia pestis Z176003]
 gi|21958882|gb|AAM85616.1|AE013807_10 putative enzyme [Yersinia pestis KIM 10]
 gi|108775488|gb|ABG18007.1| hypothetical protein YPN_1678 [Yersinia pestis Nepal516]
 gi|108779477|gb|ABG13535.1| hypothetical protein YPA_1569 [Yersinia pestis Antiqua]
 gi|145209917|gb|ABP39324.1| hypothetical protein YPDSF_0924 [Yersinia pestis Pestoides F]
 gi|165913925|gb|EDR32543.1| PHP domain protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|165920626|gb|EDR37874.1| PHP domain protein [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|165990386|gb|EDR42687.1| PHP domain protein [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166207929|gb|EDR52409.1| PHP domain protein [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|166962076|gb|EDR58097.1| PHP domain protein [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167049629|gb|EDR61037.1| PHP domain protein [Yersinia pestis biovar Antiqua str.
          UG05-0454]
 gi|167056178|gb|EDR65956.1| PHP domain protein [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|186698534|gb|ACC89163.1| PHP domain protein [Yersinia pseudotuberculosis PB1/+]
 gi|262362129|gb|ACY58850.1| hypothetical protein YPD4_1943 [Yersinia pestis D106004]
 gi|262365458|gb|ACY62015.1| hypothetical protein YPD8_1330 [Yersinia pestis D182038]
 gi|270339120|gb|EFA49897.1| PHP domain protein [Yersinia pestis KIM D27]
 gi|294354210|gb|ADE64551.1| hypothetical protein YPZ3_1641 [Yersinia pestis Z176003]
          Length = 311

 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  H++ S  +G L+ + ++ + A  +   +AITD + 
Sbjct: 31 LHSHTTAS--DGTLTPSELVIRAAQMRVGVLAITDHDT 66


>gi|295112162|emb|CBL28912.1| competence protein ComEA helix-hairpin-helix repeat region
           [Synergistetes bacterium SGP1]
          Length = 230

 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
           L A++G+G T AR I+E   +  PF S+ED   
Sbjct: 178 LEALRGIGPTLARRIVEYRQEHGPFTSVEDLVR 210


>gi|262402466|ref|ZP_06079027.1| PHP family hydrolase [Vibrio sp. RC586]
 gi|262351248|gb|EEZ00381.1| PHP family hydrolase [Vibrio sp. RC586]
          Length = 290

 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++++  +     +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQELIERAVSFNIDVLAITDHDTVAALNDARAYIAQQQYPLQLVN 62


>gi|297565571|ref|YP_003684543.1| PHP domain-containing protein [Meiothermus silvanus DSM 9946]
 gi|296850020|gb|ADH63035.1| PHP domain protein [Meiothermus silvanus DSM 9946]
          Length = 532

 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             H++YS  +G  SL  + +         + I+D 
Sbjct: 304 HNHTTYS--DGTASLREMAEAAIERGYEYMVISDH 336


>gi|188587414|ref|YP_001918959.1| PHP domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352101|gb|ACB86371.1| PHP domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 352

 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +H+ YS  +G  ++  I +K        I I D 
Sbjct: 9  HIHTKYS--DGTSTIEEIAEKAKKRNLDFIIINDH 41


>gi|240949361|ref|ZP_04753703.1| tryptophan synthase subunit alpha [Actinobacillus minor NM305]
 gi|240296211|gb|EER46864.1| tryptophan synthase subunit alpha [Actinobacillus minor NM305]
          Length = 268

 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 53/153 (34%), Gaps = 12/153 (7%)

Query: 33  LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
             + A +   A+ I D   L  A EF+  A   GIQP+  C  + D     K+    +  
Sbjct: 115 FKRCAENGVDAVLIADLPVLA-AEEFTGTAKKYGIQPVFICPPNADQATIEKVAELTEGY 173

Query: 93  FPTVPSI-VLLVSTAEGYQRLIELV-------SRMYLLDQGKQSVRICLSWLQEIGTEGL 144
              V    V           L  LV       S   L   G          L  +G +G 
Sbjct: 174 TYLVSRAGVTSAENQAHSSNLDHLVESLKWSNSAPILQGFGIAKPAQVKEALA-LGCDG- 231

Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             ++G +   I  A   N +++ ++  L  K++
Sbjct: 232 -AISGSAIVKIIEANLDNQTKLLQELGLFVKEM 263


>gi|115352188|ref|YP_774027.1| phosphotransferase domain-containing protein [Burkholderia
          ambifaria AMMD]
 gi|115282176|gb|ABI87693.1| PHP C-terminal domain protein [Burkholderia ambifaria AMMD]
          Length = 276

 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS  ++  +  A      A+TD + +        +A A G++ + G 
Sbjct: 5  LHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHDEIGGQAAARSEAEALGMRYLSGV 62

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 63 EISVTWASR 71


>gi|254412866|ref|ZP_05026639.1| hypothetical protein MC7420_1510 [Microcoleus chthonoplastes PCC
          7420]
 gi|196180601|gb|EDX75592.1| hypothetical protein MC7420_1510 [Microcoleus chthonoplastes PCC
          7420]
          Length = 235

 Score = 43.8 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 6/58 (10%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
          +  P   +   H++ S  +G L    ++++  A      AITD + +       Q A 
Sbjct: 32 DSCPRSYNFHCHTTAS--DGQLYPKTLIEQAIAIGLKGFAITDHHTIDG----YQIAK 83


>gi|113955217|ref|YP_730564.1| phosphotransferase domain-containing protein [Synechococcus sp.
          CC9311]
 gi|113882568|gb|ABI47526.1| PHP domain protein [Synechococcus sp. CC9311]
          Length = 218

 Score = 43.8 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQKA 62
          E  P  ++L  H+  S  +G+L    ++++    +   IA+TD +++ +    +++  +A
Sbjct: 18 ESCPERINLHCHTICS--DGSLEPIALIEQATVRKLLHIAVTDHHSIAAYKPMVDWLNQA 75

Query: 63 CAAG 66
             G
Sbjct: 76 RDRG 79


>gi|226324998|ref|ZP_03800516.1| hypothetical protein COPCOM_02790 [Coprococcus comes ATCC 27758]
 gi|225206346|gb|EEG88700.1| hypothetical protein COPCOM_02790 [Coprococcus comes ATCC 27758]
          Length = 129

 Score = 43.8 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 7/112 (6%)

Query: 315 AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
           +   L  +   G        +  ++R   EL  +        F I     + AKK+N  +
Sbjct: 17  SQEKLVEKYPNGV------PEAIQKRYLQELTFLENSDCIDDFEIFRCLSEEAKKSNTLM 70

Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
              RG+ +GS+  Y L     +PL            +++    F ID    +
Sbjct: 71  NM-RGTVSGSILCYLLGNHSFNPLSTHYYCTECGYYEKVDTHLFGIDLPSRK 121


>gi|134295086|ref|YP_001118821.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Burkholderia vietnamiensis G4]
 gi|134138243|gb|ABO53986.1| helix-hairpin-helix motif protein [Burkholderia vietnamiensis G4]
          Length = 115

 Score = 43.8 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882
                   +     +L  I+G+G   A+ I++   A  PF S +D  SRV  K +    +
Sbjct: 17  SAWAAVDVNTANENALVGIRGIGPARAKAILDERSARGPFKSADDLASRV--KGMGGHTV 74

Query: 883 ESLVFAGA 890
           E L   G 
Sbjct: 75  ERLQQEGL 82


>gi|172061055|ref|YP_001808707.1| phosphotransferase domain-containing protein [Burkholderia
          ambifaria MC40-6]
 gi|171993572|gb|ACB64491.1| PHP domain protein [Burkholderia ambifaria MC40-6]
          Length = 276

 Score = 43.8 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS  ++  +  A      A+TD + +        +A A G++ + G 
Sbjct: 5  LHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHDEIGGQAAARSEAEALGMRYLSGV 62

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 63 EISVTWASR 71


>gi|289578833|ref|YP_003477460.1| PHP domain protein [Thermoanaerobacter italicus Ab9]
 gi|297545053|ref|YP_003677355.1| PHP domain protein [Thermoanaerobacter mathranii subsp. mathranii
          str. A3]
 gi|289528546|gb|ADD02898.1| PHP domain protein [Thermoanaerobacter italicus Ab9]
 gi|296842828|gb|ADH61344.1| PHP domain protein [Thermoanaerobacter mathranii subsp. mathranii
          str. A3]
          Length = 243

 Score = 43.8 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALEFSQKACAAGI 67
          F     H+ YS   G  ++ + + +        IAITD       +   ++  K     I
Sbjct: 4  FADYHTHTVYS--HGKGTIEDNVKRAIKIGLEEIAITDHGPAHVFYGLRKWDFKKMREEI 61

Query: 68 QPIIG 72
            I  
Sbjct: 62 DKINE 66


>gi|229543615|ref|ZP_04432675.1| PHP domain protein [Bacillus coagulans 36D1]
 gi|229328035|gb|EEN93710.1| PHP domain protein [Bacillus coagulans 36D1]
          Length = 572

 Score = 43.8 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+ +S  +G  SL ++++         IAITD 
Sbjct: 338 LHMHTVWS--DGKDSLEDMVNACRRRGYEYIAITDH 371


>gi|29827309|ref|NP_821943.1| hypothetical protein SAV_768 [Streptomyces avermitilis MA-4680]
 gi|29604408|dbj|BAC68478.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 129

 Score = 43.8 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 15/116 (12%)

Query: 25  GALSLNNILDKIAADQQPAIAITDTNNLFSALE--FSQKACAAGIQPIIGCQ-------- 74
           GA     ++ + A      +A T  + +   +   F   A AAG +P++G          
Sbjct: 9   GASLPGALVQRAAERGMTTLAPTGRDTVAGTVRFLFLTAAAAAGSRPVLGVDVARRPSRP 68

Query: 75  ----LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL-IELVSRMYLLDQG 125
                        +   +         +   L  T  G   L + LVS  +    G
Sbjct: 69  AGPVCRTAAYARTRRRARDGAAPADHFARTELARTERGRVDLAVPLVSAAHAEADG 124


>gi|322369245|ref|ZP_08043810.1| PHP domain protein [Haladaptatus paucihalophilus DX253]
 gi|320550977|gb|EFW92626.1| PHP domain protein [Haladaptatus paucihalophilus DX253]
          Length = 579

 Score = 43.8 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNLFSALEFSQKACAAGIQPI 70
           L +H+++S  +G  ++  +++  A      IAI+D    + +   +    +   A I  +
Sbjct: 352 LHLHTNWS--DGNDTIAEMVEGAADFGHDYIAISDHATGSGMVGGVGLDDEELEAQIDEV 409

Query: 71  IGCQLDIDMQ 80
                D  + 
Sbjct: 410 RAVAEDAAID 419


>gi|292656355|ref|YP_003536252.1| PHP domain-containing protein [Haloferax volcanii DS2]
 gi|291372415|gb|ADE04642.1| PHP domain protein [Haloferax volcanii DS2]
          Length = 289

 Score = 43.8 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 1/94 (1%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            VHS  S  +   S+  IL++ A     A+ +TD + +  +L  +Q A   G+  I G +
Sbjct: 11  HVHSEGSY-DAHDSVELILEQAAEIGLDAVVVTDHDVIDESLRAAQLAPMYGLVGIPGVE 69

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           +       L +  +   P               G
Sbjct: 70  VSTADGHLLALGVEELPPRRRPLDETARWVRERG 103


>gi|154492140|ref|ZP_02031766.1| hypothetical protein PARMER_01772 [Parabacteroides merdae ATCC
          43184]
 gi|154087365|gb|EDN86410.1| hypothetical protein PARMER_01772 [Parabacteroides merdae ATCC
          43184]
          Length = 246

 Score = 43.8 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 12 VHLQVHSSYSLLEGA-LSLNNILDKIAADQQPAIAITDTNN 51
          V L +H+  S      +S   I++        AIA+TD N+
Sbjct: 6  VDLHLHTCLSPCGSLEMSPQRIVETALERGLDAIAVTDHNS 46


>gi|77360237|ref|YP_339812.1| hypothetical protein PSHAa1294 [Pseudoalteromonas haloplanktis
          TAC125]
 gi|76875148|emb|CAI86369.1| conserved protein of unknown function ; putative conserved enzyme
          (phosphoesterase domain) [Pseudoalteromonas
          haloplanktis TAC125]
          Length = 284

 Score = 43.8 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          L  H+++S  +G LS+  +L +         AITD + + +    
Sbjct: 6  LHSHTTHS--DGQLSVAELLHRAVDKNIDVFAITDHDTVAAIKPA 48


>gi|119872094|ref|YP_930101.1| putative nucleotide binding protein [Pyrobaculum islandicum DSM
           4184]
 gi|119673502|gb|ABL87758.1| putative nucleotide binding protein [Pyrobaculum islandicum DSM
           4184]
          Length = 195

 Score = 43.8 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            +SL  +KGVG    + I+E    KPF S ED   RV
Sbjct: 125 LHSLELLKGVGKKKVQEIIEERRKKPFVSYEDVKQRV 161


>gi|187935455|ref|YP_001886489.1| PHP domain protein [Clostridium botulinum B str. Eklund 17B]
 gi|187723608|gb|ACD24829.1| PHP domain protein [Clostridium botulinum B str. Eklund 17B]
          Length = 231

 Score = 43.8 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
           +HS+ S  +G  +   +++         I++TD NN     E   +    G++ I G +
Sbjct: 8  HIHSTSS--DGGYTPKQVVNFAKKRGVDIISLTDHNNTCGIDESILEGEKIGVKVIPGVE 65

Query: 75 LDIDMQDNLKM 85
          L    ++  ++
Sbjct: 66 LSTKHKNGSRV 76


>gi|170699293|ref|ZP_02890342.1| PHP domain protein [Burkholderia ambifaria IOP40-10]
 gi|170135785|gb|EDT04064.1| PHP  domain protein [Burkholderia ambifaria IOP40-10]
          Length = 276

 Score = 43.8 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS  ++  +  A      A+TD + +        +A A G++ + G 
Sbjct: 5  LHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHDEIGGQAAARSEAEALGMRYLSGV 62

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 63 EISVTWASR 71


>gi|254247808|ref|ZP_04941129.1| Phosphoesterase PHP, N-terminal [Burkholderia cenocepacia PC184]
 gi|124872584|gb|EAY64300.1| Phosphoesterase PHP, N-terminal [Burkholderia cenocepacia PC184]
          Length = 279

 Score = 43.8 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS  ++  +  A      A+TD + +        +A A G++ + G 
Sbjct: 8  LHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHDEIGGQAAARSEAEALGMRYLSGV 65

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 66 EISVTWASR 74


>gi|60280060|gb|AAX16399.1| ABC transporter [uncultured murine large bowel bacterium BAC 54B]
          Length = 595

 Score = 43.8 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G  S  +ILD+  A     IAITD + + +       A  AG+  I G 
Sbjct: 14 LHLHTDAS--DGKGSCQDILDEAIAKNIKCIAITDHHTVDNVDMMKTLAKDAGVTVISGV 71

Query: 74 QLDIDMQ 80
          +   +  
Sbjct: 72 EFRTEYG 78


>gi|78043654|ref|YP_360397.1| DNA polymerase family X protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995769|gb|ABB14668.1| DNA polymerase, X family [Carboxydothermus hydrogenoformans Z-2901]
          Length = 550

 Score = 43.8 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS +S  +G  S+ ++           I++ D 
Sbjct: 318 LHVHSQHS--DGINSIKDLALAAQKLGYEYISVNDH 351


>gi|326390953|ref|ZP_08212503.1| PHP domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325992995|gb|EGD51437.1| PHP domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 243

 Score = 43.8 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 5/48 (10%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSA 55
          F     H+ YS   G  ++ + + +        IAITD       +  
Sbjct: 4  FADYHTHTVYS--HGKGTIEDNVKRAIEIGLEEIAITDHGPAHVFYGL 49


>gi|170733454|ref|YP_001765401.1| phosphotransferase domain-containing protein [Burkholderia
          cenocepacia MC0-3]
 gi|169816696|gb|ACA91279.1| PHP domain protein [Burkholderia cenocepacia MC0-3]
          Length = 279

 Score = 43.8 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS  ++  +  A      A+TD + +        +A A G++ + G 
Sbjct: 8  LHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHDEIGGQAAARSEAEALGMRYLSGV 65

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 66 EISVTWASR 74


>gi|18314000|ref|NP_560667.1| hypothetical protein PAE3336 [Pyrobaculum aerophilum str. IM2]
 gi|18161576|gb|AAL64849.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 194

 Score = 43.8 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 15/88 (17%)

Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY---------------SLAAIKG 844
           +K+ K  +  R  ++Q          V   V      +               SL  ++G
Sbjct: 74  DKVDKIVRRIRYEDLQPQGRENLRAVVRKIVEQQEGRFVKWLNDAGPITLKLHSLELLRG 133

Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRV 872
           VG    + I++    +PF S ED   RV
Sbjct: 134 VGKKKVQEILDERKKRPFTSYEDVKQRV 161


>gi|84685169|ref|ZP_01013068.1| hypothetical protein 1099457000257_RB2654_09889 [Maritimibacter
          alkaliphilus HTCC2654]
 gi|84666901|gb|EAQ13372.1| hypothetical protein RB2654_09889 [Rhodobacterales bacterium
          HTCC2654]
          Length = 307

 Score = 43.8 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS+ S  +GAL    +  +  A+    IA+TD 
Sbjct: 17 LHTHSNLS--DGALDPGEVCRRYQAEGYDFIALTDH 50


>gi|307265906|ref|ZP_07547455.1| PHP domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919075|gb|EFN49300.1| PHP domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 243

 Score = 43.8 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 5/48 (10%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSA 55
          F     H+ YS   G  ++ + + +        IAITD       +  
Sbjct: 4  FADYHTHTVYS--HGKGTIEDNVKRAIEIGLEEIAITDHGPAHVFYGL 49


>gi|254427544|ref|ZP_05041251.1| PKD domain protein [Alcanivorax sp. DG881]
 gi|196193713|gb|EDX88672.1| PKD domain protein [Alcanivorax sp. DG881]
          Length = 908

 Score = 43.8 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 4/38 (10%)

Query: 14  LQVHSSYSLLEGA--LSLNNILDKIAADQQPAIAITDT 49
           L  H+ YS  +GA      ++ +++ A       +TD 
Sbjct: 534 LHAHTGYS--DGALNSRPADVFERVKAQGLDFTGVTDH 569


>gi|226325358|ref|ZP_03800876.1| hypothetical protein COPCOM_03159 [Coprococcus comes ATCC 27758]
 gi|225206101|gb|EEG88455.1| hypothetical protein COPCOM_03159 [Coprococcus comes ATCC 27758]
          Length = 223

 Score = 43.8 bits (102), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 20 YSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDM 79
          YS  +  L L N+++         I ITD +++    EF+ +       PI        +
Sbjct: 8  YS-GDSFLRLENMVEIAKHRGLDGICITDHDSM-GLKEFAAEYSEKTGFPIFVGIEFYSL 65

Query: 80 QDNLKMTNQGKTPFPTVP 97
          Q ++        P   +P
Sbjct: 66 QGDIVAFGIEDYPKERIP 83


>gi|91200048|emb|CAJ73090.1| conserved hypothetical protein [Candidatus Kuenenia
          stuttgartiensis]
          Length = 213

 Score = 43.8 bits (102), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+ +S  +G L  + ++ +        +AITD 
Sbjct: 4  LHTHTLFS--DGVLLPSELIRRCEVKGFRGLAITDH 37


>gi|115350984|ref|YP_772823.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Burkholderia ambifaria AMMD]
 gi|115280972|gb|ABI86489.1| helix-hairpin-helix motif protein [Burkholderia ambifaria AMMD]
          Length = 114

 Score = 43.8 bits (102), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882
                   +     +L  IKG+G   A+ I++   A  PF + ED  SRV  K +    +
Sbjct: 17  SAWAAVDVNTANEDALVGIKGIGPARAKAILDERGAHGPFRNAEDLASRV--KGMGGHTV 74

Query: 883 ESLVFAGA 890
           E L   G 
Sbjct: 75  ERLQQEGL 82


>gi|330428685|gb|AEC20019.1| hypothetical protein PT7_1479 [Pusillimonas sp. T7-7]
          Length = 164

 Score = 43.8 bits (102), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881
           L  ++G+G  TA+ I+E       ++SLED   R+      +  
Sbjct: 94  LRGVRGIGPKTAKTIIEERSRAGRYESLEDLSDRIKGIGPKKAA 137


>gi|283850563|ref|ZP_06367851.1| PHP domain protein [Desulfovibrio sp. FW1012B]
 gi|283574134|gb|EFC22106.1| PHP domain protein [Desulfovibrio sp. FW1012B]
          Length = 574

 Score = 43.8 bits (102), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H++Y+  +G  S   +     A     +AITD 
Sbjct: 344 LHAHTNYT--DGRDSPREMGLAARARGYEYLAITDH 377


>gi|163783747|ref|ZP_02178733.1| hypothetical protein HG1285_01583 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880993|gb|EDP74511.1| hypothetical protein HG1285_01583 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 346

 Score = 43.8 bits (102), Expect = 0.17,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          S+V L +H+ +S  +      +++          + +TD +N
Sbjct: 46 SYV-LHIHTQFSY-DSLGKPEDVIRARDRCGIDYVIVTDHDN 85


>gi|530468|emb|CAA83805.1| DNA polymerase III (alpha) [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 95

 Score = 43.8 bits (102), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-KIKKFCQDARQFNIQIMPPSVNT 823
            AY +++Y+ AW K +YP E+ A  ++ + D  + K      +A    ++     V  
Sbjct: 1   TAYVLMAYRIAWYKIYYPTEYYATYLSTKADVFDLKTALGGYEAVLLKLKSQQQKVKN 58


>gi|319641887|ref|ZP_07996561.1| hypothetical protein HMPREF9011_02160 [Bacteroides sp. 3_1_40A]
 gi|317386489|gb|EFV67394.1| hypothetical protein HMPREF9011_02160 [Bacteroides sp. 3_1_40A]
          Length = 632

 Score = 43.8 bits (102), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L +HS  S  +G ++   I+DK   ++   IA+TD + +
Sbjct: 13 LHIHSDAS--DGKMNCQEIIDKAKEEKLSVIALTDHHTV 49


>gi|294791809|ref|ZP_06756957.1| PHP domain protein [Veillonella sp. 6_1_27]
 gi|294457039|gb|EFG25401.1| PHP domain protein [Veillonella sp. 6_1_27]
          Length = 275

 Score = 43.8 bits (102), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
          V   +HS +S  +G  +  ++L          +A+TD + +   ++  + A         
Sbjct: 3  VDFHIHSIFS--DGVETPKDLLQHAIDCNVSMMALTDHDEIDG-IQALRAAQKKLDPNES 59

Query: 67 IQPIIGCQLDIDMQDN 82
          I+ + GC+   D +D 
Sbjct: 60 IKIVNGCEFSADYKDK 75


>gi|307249704|ref|ZP_07531684.1| Tryptophan synthase alpha chain [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858270|gb|EFM90346.1| Tryptophan synthase alpha chain [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 269

 Score = 43.8 bits (102), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 39/125 (31%), Gaps = 10/125 (8%)

Query: 33  LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
             + A     A+ I D   L  A EF+Q A   GIQ +  C  + D     ++    +  
Sbjct: 115 FKRCAETGVDAVLIADVPVLA-AEEFTQAAKKHGIQSVFICPPNADQATIERIARLTEGY 173

Query: 93  FPTVPSI-VLLVSTAEGYQRLIELV-------SRMYLLDQGKQSVRICLSWLQEIGTEGL 144
              V    V         + L  L+       S   L   G          L  +G +G 
Sbjct: 174 TYLVSRAGVTSAENQAHAKNLDNLIESLKRSNSAPILQGFGIAKPEQVKEALA-LGCDGA 232

Query: 145 IMLTG 149
           I  + 
Sbjct: 233 ISGSA 237


>gi|296331593|ref|ZP_06874062.1| hypothetical protein BSU6633_10823 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675448|ref|YP_003867120.1| DNA polymerase X [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151188|gb|EFG92068.1| hypothetical protein BSU6633_10823 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413692|gb|ADM38811.1| DNA polymerase X [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 570

 Score = 43.8 bits (102), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +         +AITD 
Sbjct: 338 LHMHSTWS--DGAFSIREMAEACMNKGYQYMAITDH 371


>gi|165975929|ref|YP_001651522.1| tryptophan synthase subunit alpha [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|226741247|sp|B0BU73|TRPA_ACTPJ RecName: Full=Tryptophan synthase alpha chain
 gi|165876030|gb|ABY69078.1| tryptophan synthase alpha chain [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 269

 Score = 43.8 bits (102), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 39/125 (31%), Gaps = 10/125 (8%)

Query: 33  LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
             + A     A+ I D   L  A EF+Q A   GIQ +  C  + D     ++    +  
Sbjct: 115 FKRCAETGVDAVLIADVPVLA-AEEFTQAAKKHGIQSVFICPPNADQATIERIARLTEGY 173

Query: 93  FPTVPSI-VLLVSTAEGYQRLIELV-------SRMYLLDQGKQSVRICLSWLQEIGTEGL 144
              V    V         + L  L+       S   L   G          L  +G +G 
Sbjct: 174 TYLVSRAGVTSAENQAHAKNLDNLIESLKRSNSAPILQGFGIAKPEQVKEALA-LGCDGA 232

Query: 145 IMLTG 149
           I  + 
Sbjct: 233 ISGSA 237


>gi|188997023|ref|YP_001931274.1| phosphoesterase PHP domain protein [Sulfurihydrogenibium sp.
          YO3AOP1]
 gi|188932090|gb|ACD66720.1| phosphoesterase PHP domain protein [Sulfurihydrogenibium sp.
          YO3AOP1]
          Length = 347

 Score = 43.4 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAA-DQQPAIAITDTNNL 52
           VH+ +S  +     ++ + K    +    + ITD +NL
Sbjct: 37 HVHTQFSF-DSLGKPSD-IKKAMEINNIDYVFITDHDNL 73


>gi|168181055|ref|ZP_02615719.1| PHP domain protein [Clostridium botulinum NCTC 2916]
 gi|182668161|gb|EDT80140.1| PHP domain protein [Clostridium botulinum NCTC 2916]
          Length = 225

 Score = 43.4 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 15 QVH-SSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +H S YS L+  +SL  I+ K        + ITD 
Sbjct: 6  HIHESKYS-LDSEISLEEIVKKGKEIGLDGVCITDH 40


>gi|150403051|ref|YP_001330345.1| hypothetical protein MmarC7_1128 [Methanococcus maripaludis C7]
 gi|150034081|gb|ABR66194.1| PHP domain protein [Methanococcus maripaludis C7]
          Length = 240

 Score = 43.4 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G L  + ++ +    +  AI ITD 
Sbjct: 28 HTHTIFS--DGELIPSELVRRAIVLEHRAIGITDH 60


>gi|293605207|ref|ZP_06687595.1| glycosyltransferase [Achromobacter piechaudii ATCC 43553]
 gi|292816392|gb|EFF75485.1| glycosyltransferase [Achromobacter piechaudii ATCC 43553]
          Length = 722

 Score = 43.4 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 71/235 (30%), Gaps = 45/235 (19%)

Query: 25  GALSLNN-------ILDKIAADQQPAIAITDTNNLFS---------ALEFSQKACAAGIQ 68
           G L           ++ ++ A   PA+ +     +           A E  + A   GI 
Sbjct: 195 GVLRPEKGQADLLRVVQRLRALGVPAVGL-----VVGMPTPATKAYAYELYRLAVELGIS 249

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +                           ++L+ S AE +       SR+       + 
Sbjct: 250 EHVVFAGH----------RSDVPDMIQAADVMLVPSAAEAW-------SRVVPESFAMRR 292

Query: 129 VRIC-----LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RL 182
             +      L  + + G  G +   G  +  +D      +   A + ++   + F D   
Sbjct: 293 PVVASDVGGLPEIVKPGHTGWLAAPGDVAAYVDCILQIRNQPAAAQAIVNHARAFADTHF 352

Query: 183 YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            +  + HR  + YR +     A    L L+AT   +  +     A D+L+     
Sbjct: 353 RLEEKMHRTLEAYRLAMEPGGASQPGLSLLATRPKVLAAGGLAGA-DLLVCAQTG 406


>gi|218884365|ref|YP_002428747.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Desulfurococcus kamchatkensis 1221n]
 gi|218765981|gb|ACL11380.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Desulfurococcus kamchatkensis 1221n]
          Length = 232

 Score = 43.4 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          L +HS YS  +G  S   I+          I+ITD +     LE  + +  
Sbjct: 10 LHIHSVYS--DGKASPREIIRHALIRGINVISITDHDTFKGGLEGYRFSRE 58


>gi|206560534|ref|YP_002231299.1| putative phosphoesterase [Burkholderia cenocepacia J2315]
 gi|198036576|emb|CAR52473.1| putative phosphoesterase [Burkholderia cenocepacia J2315]
          Length = 279

 Score = 43.4 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS  ++  +  A      A+TD + +        +A A G++ + G 
Sbjct: 8  LHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHDEIGGQAAARSEAEALGMRYLSGV 65

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 66 EISVTWASR 74


>gi|78184692|ref|YP_377127.1| phosphoesterase PHP-like [Synechococcus sp. CC9902]
 gi|78168986|gb|ABB26083.1| Phosphoesterase PHP-like [Synechococcus sp. CC9902]
          Length = 215

 Score = 43.4 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            H+  S  +G+L    ++ +        +A+TD ++
Sbjct: 24 HCHTVCS--DGSLEPVGLVQQATNLGLTHLAVTDHHS 58


>gi|51894035|ref|YP_076726.1| DNA-dependent DNA polymerase family X protein [Symbiobacterium
           thermophilum IAM 14863]
 gi|51857724|dbj|BAD41882.1| DNA-dependent DNA polymerase family X [Symbiobacterium thermophilum
           IAM 14863]
          Length = 555

 Score = 43.4 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH++ S  +G   L  + +   A     +A+ D 
Sbjct: 324 LHVHTAAS--DGTAGLAEMAEAARALGHRYLAVCDH 357


>gi|330508533|ref|YP_004384961.1| hypothetical protein MCON_2753 [Methanosaeta concilii GP-6]
 gi|328929341|gb|AEB69143.1| Protein of unknown function (DUF655) [Methanosaeta concilii GP-6]
          Length = 193

 Score = 43.4 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 21/58 (36%)

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             ++L  + G+G      ++      PF S  D   RV       +++   +    +D
Sbjct: 121 RMHALELLPGIGKKLMWSVLNERKKGPFKSFADLVERVKGLHNPEKLIAKRIEDELMD 178


>gi|253583381|ref|ZP_04860579.1| histidinol-phosphatase [Fusobacterium varium ATCC 27725]
 gi|251833953|gb|EES62516.1| histidinol-phosphatase [Fusobacterium varium ATCC 27725]
          Length = 267

 Score = 43.4 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +HS +S  +   +++ ++ K  +     IAITD 
Sbjct: 7  HLHSEFS-GDSIQNIDELILKAISMGIEEIAITDH 40


>gi|332158062|ref|YP_004423341.1| hypothetical protein PNA2_0420 [Pyrococcus sp. NA2]
 gi|331033525|gb|AEC51337.1| hypothetical protein PNA2_0420 [Pyrococcus sp. NA2]
          Length = 205

 Score = 43.4 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             +SL  + G+G      I+E    KPF+S ED   RV       +++   + 
Sbjct: 132 RLHSLELLPGIGKKHMWDIIEEREKKPFESFEDLKKRVKGLPDPVKMIAKRIL 184


>gi|314936677|ref|ZP_07844024.1| DNA-dependent DNA polymerase family X [Staphylococcus hominis
           subsp. hominis C80]
 gi|313655296|gb|EFS19041.1| DNA-dependent DNA polymerase family X [Staphylococcus hominis
           subsp. hominis C80]
          Length = 570

 Score = 43.4 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++YS  +GA S+  +++         + ITD 
Sbjct: 336 LHMHTTYS--DGAFSIREMIEANIKKGYEYMVITDH 369


>gi|107028720|ref|YP_625815.1| PHP-like [Burkholderia cenocepacia AU 1054]
 gi|116690121|ref|YP_835744.1| phosphotransferase domain-containing protein [Burkholderia
          cenocepacia HI2424]
 gi|105897884|gb|ABF80842.1| PHP-like protein [Burkholderia cenocepacia AU 1054]
 gi|116648210|gb|ABK08851.1| PHP C-terminal domain protein [Burkholderia cenocepacia HI2424]
          Length = 279

 Score = 43.4 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS  ++  +  A      A+TD + +        +A A G++ + G 
Sbjct: 8  LHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHDEIGGQATARSEAEALGMRYLSGV 65

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 66 EISVTWASR 74


>gi|229821390|ref|YP_002882916.1| PHP domain protein [Beutenbergia cavernae DSM 12333]
 gi|229567303|gb|ACQ81154.1| PHP domain protein [Beutenbergia cavernae DSM 12333]
          Length = 280

 Score = 43.4 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  S  +G  +  +++   A      +A+TD +      E +      G+  + G 
Sbjct: 5  LHTHSRAS--DGTDAPADLMRAAADAGLDVVALTDHDTARGWGEAADAVPETGVVLVRGT 62

Query: 74 QLDI 77
          ++  
Sbjct: 63 EISC 66


>gi|228476245|ref|ZP_04060947.1| DNA-dependent DNA polymerase beta chain [Staphylococcus hominis
           SK119]
 gi|228269648|gb|EEK11150.1| DNA-dependent DNA polymerase beta chain [Staphylococcus hominis
           SK119]
          Length = 570

 Score = 43.4 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++YS  +GA S+  +++         + ITD 
Sbjct: 336 LHMHTTYS--DGAFSIREMIEANIKKGYEYMVITDH 369


>gi|299531544|ref|ZP_07044950.1| PHP-like protein [Comamonas testosteroni S44]
 gi|298720507|gb|EFI61458.1| PHP-like protein [Comamonas testosteroni S44]
          Length = 296

 Score = 43.4 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L  HS  S  +G L+   +  + A       A+TD + +  
Sbjct: 19 LHCHSVVS--DGTLTPEQLALRAAERGVELWALTDHDEVGG 57


>gi|264676973|ref|YP_003276879.1| PHP-like protein [Comamonas testosteroni CNB-2]
 gi|262207485|gb|ACY31583.1| PHP-like protein [Comamonas testosteroni CNB-2]
          Length = 287

 Score = 43.4 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L  HS  S  +G L+   +  + A       A+TD + +  
Sbjct: 10 LHCHSVVS--DGTLTPEQLALRAAERGVELWALTDHDEVGG 48


>gi|169842053|ref|ZP_02875158.1| DNA polymerase III alpha subunit [candidate division TM7
           single-cell isolate TM7a]
          Length = 54

 Score = 43.4 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 320 EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
           E +       +    ++   RLD EL+V+  M ++GYFLIV DFI W K 
Sbjct: 5   EAKKLTNKELRAKLTKEQIDRLDMELSVLDNMGYNGYFLIVQDFINWGKS 54


>gi|154248897|ref|YP_001409722.1| HisJ family histidinol phosphate phosphatase [Fervidobacterium
           nodosum Rt17-B1]
 gi|154152833|gb|ABS60065.1| histidinol phosphate phosphatase HisJ family [Fervidobacterium
           nodosum Rt17-B1]
          Length = 240

 Score = 43.4 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 24/201 (11%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA------LEFSQKACAAGIQ 68
            +HS+YS  +   ++  IL+     +   I ITD   L  +      +E  +K       
Sbjct: 9   HIHSNYSP-DSNSTIEEILETAREKRIEHIIITDHYELADSHFNVIDIETYRKEMEKYSL 67

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR-LIELVSRMYLLDQGKQ 127
           P+        +++ L +              V    T E Y+  L+ L+  +   D    
Sbjct: 68  PVGVELGWDGIKE-LNIDTTKFDYVLLAHHYVEEPITQESYKNYLLRLLDIVKRFDSYHA 126

Query: 128 SVRICL------------SWLQEIGTEGL-IMLTGGSSGPIDRAF--FFNSSQVAEKRLL 172
              +                L +I TE L I+++ G    ++ +    +     +   L 
Sbjct: 127 LAHLDFPRRYHPQREEFSKELYDIITEILKIVISNGKMLEVNVSPIKLYGEPNPSIDILK 186

Query: 173 TFKKLFGDRLYVNLQRHRGYD 193
            +K L G  + +    H+  D
Sbjct: 187 LYKSLGGRNITIGSDAHKLED 207


>gi|46579395|ref|YP_010203.1| hypothetical protein DVU0982 [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120603049|ref|YP_967449.1| hypothetical protein Dvul_2006 [Desulfovibrio vulgaris DP4]
 gi|46448809|gb|AAS95462.1| PHP domain protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|120563278|gb|ABM29022.1| PHP C-terminal domain protein [Desulfovibrio vulgaris DP4]
 gi|311233218|gb|ADP86072.1| PHP domain protein [Desulfovibrio vulgaris RCH1]
          Length = 219

 Score = 43.4 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           VH+++S  +  ++    +         A+A+TD 
Sbjct: 5  HVHTTFS--DSTMTPAVAVRHAKMAGYRAVALTDH 37


>gi|119715758|ref|YP_922723.1| hypothetical protein Noca_1522 [Nocardioides sp. JS614]
 gi|119536419|gb|ABL81036.1| PHP C-terminal domain protein [Nocardioides sp. JS614]
          Length = 378

 Score = 43.4 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G   +  +           + +TD 
Sbjct: 140 LHSHSDWS--DGGSPIEEMAFTAIELGHDYLVLTDH 173


>gi|291279182|ref|YP_003496017.1| hypothetical protein DEFDS_0783 [Deferribacter desulfuricans
          SSM1]
 gi|290753884|dbj|BAI80261.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 286

 Score = 43.4 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          L +H+++S  +G  S   I  +I        +ITD N++   L+   K
Sbjct: 5  LHIHTNFSS-DGEFSPLEIYKEIKKRGVSLFSITDHNSIDGVLDLYSK 51


>gi|323526590|ref|YP_004228743.1| PHP domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323383592|gb|ADX55683.1| PHP domain protein [Burkholderia sp. CCGE1001]
          Length = 277

 Score = 43.4 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 2/95 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  +  ++  +  A      A+TD + L    E  Q A   G++ + G 
Sbjct: 6   LHCHSTVS--DGQFAPADVARRAHAGGVTLWALTDHDELGGQHEARQAAEELGMRYLSGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           ++ +                 +   I  L  T  G
Sbjct: 64  EISVTWAARTVHIVGLGIDPTSSVLIDGLARTRNG 98


>gi|29829645|ref|NP_824279.1| hypothetical protein SAV_3103 [Streptomyces avermitilis MA-4680]
 gi|29606753|dbj|BAC70814.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 288

 Score = 43.4 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  HS+ S  +G  +   ++    A     +A+TD ++
Sbjct: 5  LHTHSTAS--DGTDTPAELVRNAGAAGLDVVALTDHDS 40


>gi|171914276|ref|ZP_02929746.1| PHP domain protein [Verrucomicrobium spinosum DSM 4136]
          Length = 581

 Score = 43.4 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             H++ S  +G  SL  + ++        + I D 
Sbjct: 343 HNHTTAS--DGVNSLEEMAEEAQELGLQYLGIADH 375


>gi|302556922|ref|ZP_07309264.1| trehalose synthase [Streptomyces griseoflavus Tu4000]
 gi|302474540|gb|EFL37633.1| trehalose synthase [Streptomyces griseoflavus Tu4000]
          Length = 572

 Score = 43.4 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 89/307 (28%), Gaps = 47/307 (15%)

Query: 41  QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
             A+ + D  +L   +EF+  A   G++ II   ++    ++       K P        
Sbjct: 86  YTAV-LPDFGDLADFVEFADAAHHRGMRVIIDFVMNHTSDEHPWFQESRKDPDGPYGDFY 144

Query: 101 LLVSTAEGY--QRL----IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
           +      GY   R+     E  +  Y   +G+       S   ++  E            
Sbjct: 145 VWADDDRGYPDARIIFVDTEASNWTYDPVRGQYYFHRFFSHQPDLNYEN----------- 193

Query: 155 IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH----RGYDRYRESQVVQLAYTHELP 210
                     +     L  +  L  D   ++   +     G +                 
Sbjct: 194 ------PRVQEEILAALKFWLDLGIDGFRLDAVPYLYAAEGTNCENLPASHAFLKRVRKE 247

Query: 211 LVATN-NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF----- 264
           + A   +++ L+E +    DV+           +                M  IF     
Sbjct: 248 IDAQYPDTVLLAEANQWPEDVVDYFGDYAAGGDECHMAFHFPV-------MPRIFMAVRR 300

Query: 265 -SDLP--EALENTVEIARRCSFILQVHAPI---LPRFIEKECDDIQKEEENELRNKAVAG 318
            S  P  E L  T  I   C + + +       L    ++E D +  E   + R +A  G
Sbjct: 301 ESRYPVSEILAKTPAIPSGCQWGIFLRNHDELTLEMVTDEERDYMWAEYAKDPRMRANIG 360

Query: 319 LEVRLAQ 325
           +  RLA 
Sbjct: 361 IRRRLAP 367


>gi|213422874|ref|ZP_03355907.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 35

 Score = 43.4 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
           A MT +MDN EK+     +  +  ++I+PP +N+
Sbjct: 1   AVMTADMDNTEKVVGLVDECWRMGLKILPPDINS 34


>gi|308802708|ref|XP_003078667.1| unnamed protein product [Ostreococcus tauri]
 gi|116057120|emb|CAL51547.1| unnamed protein product [Ostreococcus tauri]
          Length = 189

 Score = 43.4 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 8/59 (13%), Positives = 16/59 (27%), Gaps = 12/59 (20%)

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             LR+                 + +   VV ++ +K  K       T  +     E   +
Sbjct: 66   ELRRKVGTTIA--------RRVEVCGYVVERRTRKDSK----VIFTLDDGTGCVECVVW 112


>gi|328952581|ref|YP_004369915.1| PHP domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452905|gb|AEB08734.1| PHP domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 220

 Score = 43.4 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 70/225 (31%), Gaps = 16/225 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS-QKACAAGIQPIIG 72
           L  HS YS  +G L     + ++       + ITD     S  +F  ++   A I+    
Sbjct: 4   LHTHSLYS--DGELLPAEAVRRVTVLGYRYLGITDH-VDASNFDFVIERLRRAAIELNRV 60

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            Q  +              P   + S+V  V        ++   + +  ++ G     + 
Sbjct: 61  NQTKLIPGVEFTHV-----PPSQIGSLVNQVRAMGAVLVVVHGETIVEPVEPGTNRAGL- 114

Query: 133 LSWLQEIGTEGLI----MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            + +  +   GLI           G +          +A   +    +  G RL +N   
Sbjct: 115 EADIDILAHPGLISREDAELAARRGIMLELSARAGHSLANGHVAAIARQVGARLVLNTDS 174

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           H   +     +  Q+A    L L   +    L+  +  A   L  
Sbjct: 175 HSPGNYITREKAYQIAQGAGLSLEECH--QMLANSEALALRALDC 217


>gi|309781238|ref|ZP_07675975.1| PHP domain protein [Ralstonia sp. 5_7_47FAA]
 gi|308920059|gb|EFP65719.1| PHP domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 286

 Score = 43.4 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 2/106 (1%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L+ + +  + AA      A+TD + +       + A   G+  + G 
Sbjct: 14  LHCHSTVS--DGMLAPHEVAARAAAHGVTLWALTDHDEVGGQAAAREAATVLGMDYLSGV 71

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
           ++ +                        L  T  G     E +S  
Sbjct: 72  EISVTWAGRTLHIVGLGIDPDNADLAQGLERTRSGRCARAEDISAA 117


>gi|317489456|ref|ZP_07947966.1| PHP domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|316911385|gb|EFV32984.1| PHP domain-containing protein [Eggerthella sp. 1_3_56FAA]
          Length = 262

 Score = 43.4 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 9/114 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VHS+ S  +G+ +   +L++ A      +A T+ +         +     G+Q + G 
Sbjct: 5   LHVHSTMS--DGSDTFEQVLEQAAQRGVERLAFTNHDTTAGLTAARELGERLGVQVVGGI 62

Query: 74  QLDIDMQDNLKMTN-------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
           ++     +  +  +       +G      +    L    A    +L  LV   Y
Sbjct: 63  EVSAYDFERGRKVHILGLGVEEGAPALAALCGPTLQQRNANSLWQLDRLVEAGY 116


>gi|259908327|ref|YP_002648683.1| Protein TrpH [Erwinia pyrifoliae Ep1/96]
 gi|224963949|emb|CAX55454.1| Protein TrpH [Erwinia pyrifoliae Ep1/96]
 gi|283478265|emb|CAY74181.1| Protein trpH [Erwinia pyrifoliae DSM 12163]
          Length = 303

 Score = 43.4 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H+  S  +G L+   ++ +    +   +AITD +         +      + 
Sbjct: 16 LHSHTRAS--DGLLTPEQLVLRAVQQRVGVLAITDHDTTDGIAPAREAVTRHQLP 68


>gi|217076982|ref|YP_002334698.1| PHP domain protein [Thermosipho africanus TCF52B]
 gi|217036835|gb|ACJ75357.1| PHP domain protein [Thermosipho africanus TCF52B]
          Length = 266

 Score = 43.4 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 64/178 (35%), Gaps = 15/178 (8%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP-I 70
           V   +HS+ S  +G  + N ++  +   +    ++TD + +    +  +K    G++  I
Sbjct: 3   VDFHMHSTAS--DGTFNPNELVTLVKERKIECFSLTDHDTIDGVKQIKEKNFIPGVEISI 60

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
                   +     + N+                    Y+R +++V +   L        
Sbjct: 61  EHPTTLHILGYGFDINNEKFNKVLDQLKQYR-------YERNVKMVEKANALGF-----D 108

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
           I L  L E     LI     +S  + + +  +  +  EK L     L+ D+  ++L+ 
Sbjct: 109 ITLEELLEEANGTLIGRPHFASLLLKKGYVKDRKEAFEKYLKRGMPLYEDKKRLDLEN 166


>gi|258654515|ref|YP_003203671.1| hypothetical protein Namu_4395 [Nakamurella multipartita DSM 44233]
 gi|258557740|gb|ACV80682.1| PHP domain protein [Nakamurella multipartita DSM 44233]
          Length = 337

 Score = 43.4 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G   +  +            A+TD 
Sbjct: 102 LHAHSDWS--DGGSPIQEMTVTAQELGHEYQALTDH 135


>gi|330823717|ref|YP_004387020.1| PHP domain-containing protein [Alicycliphilus denitrificans K601]
 gi|329309089|gb|AEB83504.1| PHP domain protein [Alicycliphilus denitrificans K601]
          Length = 322

 Score = 43.4 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  S  +G L+   +  +  A+     A+TD +
Sbjct: 38 LHCHSVVS--DGTLTPEQLAARAHANGVQLWALTDHD 72


>gi|301310229|ref|ZP_07216168.1| putative PHP domain protein [Bacteroides sp. 20_3]
 gi|300831803|gb|EFK62434.1| putative PHP domain protein [Bacteroides sp. 20_3]
          Length = 248

 Score = 43.4 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 1  LTQYLEKSPSFVHLQVHSSYSLLEGA-LSLNNILDKIAADQQPAIAITDTNN 51
          + QYL        L +H+  S      +S + I+ +  A    AIAITD N 
Sbjct: 1  MKQYL------ADLHIHTCLSPCGSLEMSPSEIVRRSLAKGLDAIAITDHNT 46


>gi|294676571|ref|YP_003577186.1| PHP domain-containing protein [Rhodobacter capsulatus SB 1003]
 gi|294475391|gb|ADE84779.1| PHP domain protein [Rhodobacter capsulatus SB 1003]
          Length = 317

 Score = 43.4 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS  S  +GAL    +  + AA+    +A+TD 
Sbjct: 16 LHGHSDRS--DGALPPEEVCRRYAAEGYDFLALTDH 49


>gi|242279949|ref|YP_002992078.1| hypothetical protein Desal_2483 [Desulfovibrio salexigens DSM
          2638]
 gi|242122843|gb|ACS80539.1| PHP domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 218

 Score = 43.4 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G L    +  +       A+A+TD 
Sbjct: 5  HTHTVFS--DGELIPAELARRARVAGYRALAMTDH 37


>gi|284051767|ref|ZP_06381977.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Arthrospira platensis str. Paraca]
          Length = 551

 Score = 43.4 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
           L ++ G+G   A+ I+EA + +PF SL+D         +  + +E 
Sbjct: 502 LESLPGIGPGLAQRIIEARSQQPFTSLDDVTR---VSGIGPKTIER 544


>gi|209525765|ref|ZP_03274301.1| helix-hairpin-helix motif [Arthrospira maxima CS-328]
 gi|209493738|gb|EDZ94057.1| helix-hairpin-helix motif [Arthrospira maxima CS-328]
          Length = 551

 Score = 43.4 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
           L ++ G+G   A+ I+EA + +PF SL+D         +  + +E 
Sbjct: 502 LESLPGIGPGLAQRIIEARSQQPFTSLDDVTR---VSGIGPKTIER 544


>gi|170698408|ref|ZP_02889481.1| helix-hairpin-helix motif [Burkholderia ambifaria IOP40-10]
 gi|170136661|gb|EDT04916.1| helix-hairpin-helix motif [Burkholderia ambifaria IOP40-10]
          Length = 114

 Score = 43.4 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882
                   +     +L  IKG+G   A+ I++   A  PF + ED  SRV  K +    +
Sbjct: 17  SAWAAVDVNTANEDALVGIKGIGPARAKAILDERGARGPFRNAEDLASRV--KGMGGHTV 74

Query: 883 ESLVFAGA 890
           E L   G 
Sbjct: 75  ERLQQEGL 82


>gi|45357692|ref|NP_987249.1| hypothetical protein MMP0129 [Methanococcus maripaludis S2]
 gi|45047252|emb|CAF29685.1| Conserved Hypothetical Protein [Methanococcus maripaludis S2]
          Length = 218

 Score = 43.4 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G L  + ++ + +  +  A+ ITD 
Sbjct: 6  HTHTVFS--DGELIPSELIRRASVLEHRAVGITDH 38


>gi|288930670|ref|YP_003434730.1| hypothetical protein Ferp_0274 [Ferroglobus placidus DSM 10642]
 gi|288892918|gb|ADC64455.1| Protein of unknown function DUF655 [Ferroglobus placidus DSM 10642]
          Length = 192

 Score = 43.4 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
           L  + G+G  T   I+E    +PF S ED   RV       + + + +  
Sbjct: 129 LELLPGIGKKTMWAILEERKKEPFKSFEDIAKRVKGLSHPEKCIVNRIIH 178


>gi|148508267|gb|ABQ76052.1| PHP domain protein [uncultured haloarchaeon]
          Length = 295

 Score = 43.4 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 1  LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL 56
          +   +     F  L VH++ S  +G  +L+    +      P  A+TD + +  A 
Sbjct: 1  MNVEMINEHGFADLHVHTTAS--DGVDTLSERCARAREVDLPIFAVTDHDCVHPAF 54


>gi|28493351|ref|NP_787512.1| comE operon protein 1-like protein [Tropheryma whipplei str. Twist]
 gi|28572539|ref|NP_789319.1| DNA uptake protein [Tropheryma whipplei TW08/27]
 gi|28410671|emb|CAD67057.1| putative DNA uptake protein [Tropheryma whipplei TW08/27]
 gi|28476392|gb|AAO44481.1| comE operon protein 1-like protein [Tropheryma whipplei str. Twist]
          Length = 193

 Score = 43.4 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK 860
           + +  +D     I ++P    +  V+    +      L +IKG+G  TA+ I++      
Sbjct: 111 LAELLRD--GQKIVVLPKDSESSPVN---INTADAQRLQSIKGIGKATAKRIIDWRNKHG 165

Query: 861 PFDSLEDF 868
           PF  LED 
Sbjct: 166 PFKRLEDL 173


>gi|310767750|gb|ADP12700.1| Protein TrpH [Erwinia sp. Ejp617]
          Length = 293

 Score = 43.4 bits (101), Expect = 0.22,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H+  S  +G L+   ++ +    +   +AITD +         +      + 
Sbjct: 16 LHSHTRAS--DGLLTPEQLVLRAVQQRVGVLAITDHDTTDGIAPAREAVTRHQLP 68


>gi|221201268|ref|ZP_03574308.1| DNA-binding protein [Burkholderia multivorans CGD2M]
 gi|221206278|ref|ZP_03579291.1| DNA-binding protein [Burkholderia multivorans CGD2]
 gi|221213557|ref|ZP_03586531.1| DNA-binding protein [Burkholderia multivorans CGD1]
 gi|221166346|gb|EED98818.1| DNA-binding protein [Burkholderia multivorans CGD1]
 gi|221173587|gb|EEE06021.1| DNA-binding protein [Burkholderia multivorans CGD2]
 gi|221179118|gb|EEE11525.1| DNA-binding protein [Burkholderia multivorans CGD2M]
          Length = 118

 Score = 43.4 bits (101), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 13/76 (17%)

Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874
                VN+   D          +L  IKG+G   A+ I++   A  PF    D  SRV  
Sbjct: 19  WAAVDVNSANED----------ALMGIKGIGPARAKAILDERGARGPFKDAADLASRV-- 66

Query: 875 KKLNRRVLESLVFAGA 890
           K +    +E L   G 
Sbjct: 67  KGMGGHTVERLQKEGL 82


>gi|163856206|ref|YP_001630504.1| hypothetical protein Bpet1896 [Bordetella petrii DSM 12804]
 gi|163259934|emb|CAP42235.1| conserved hypothetical protein [Bordetella petrii]
          Length = 159

 Score = 43.4 bits (101), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNR 879
           L A+ GVG  TA+ I++      PF+SL+D   RV      R
Sbjct: 80  LEALHGVGPRTAQIIVQERERAGPFESLQDLSDRVRGIGPKR 121


>gi|161525420|ref|YP_001580432.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Burkholderia multivorans ATCC 17616]
 gi|189349843|ref|YP_001945471.1| competence protein [Burkholderia multivorans ATCC 17616]
 gi|160342849|gb|ABX15935.1| helix-hairpin-helix motif [Burkholderia multivorans ATCC 17616]
 gi|189333865|dbj|BAG42935.1| competence protein [Burkholderia multivorans ATCC 17616]
          Length = 125

 Score = 43.4 bits (101), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 13/76 (17%)

Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874
                VN+   D          +L  IKG+G   A+ I++   A  PF    D  SRV  
Sbjct: 19  WAAVDVNSANED----------ALMGIKGIGPARAKAILDERSARGPFKDAADLASRV-- 66

Query: 875 KKLNRRVLESLVFAGA 890
           K +    +E L   G 
Sbjct: 67  KGMGGHTVERLQKEGL 82


>gi|262381757|ref|ZP_06074895.1| metal-dependent phosphoesterase [Bacteroides sp. 2_1_33B]
 gi|262296934|gb|EEY84864.1| metal-dependent phosphoesterase [Bacteroides sp. 2_1_33B]
          Length = 248

 Score = 43.4 bits (101), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 1  LTQYLEKSPSFVHLQVHSSYSLLEGA-LSLNNILDKIAADQQPAIAITDTNN 51
          + QYL        L +H+  S      +S + I+ +  A    AIAITD N 
Sbjct: 1  MKQYL------ADLHIHTCLSPCGSLEMSPSEIVRRSLAKGLDAIAITDHNT 46


>gi|297584171|ref|YP_003699951.1| PHP domain-containing protein [Bacillus selenitireducens MLS10]
 gi|297142628|gb|ADH99385.1| PHP domain protein [Bacillus selenitireducens MLS10]
          Length = 284

 Score = 43.4 bits (101), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L +HS+ S  +G      ++ K A      I++TD +      +    A A G+  I 
Sbjct: 8  LHMHSTAS--DGGYGQEALVKKAADAGLTMISLTDHDTTNGLEKARHTAAALGLSFIN 63


>gi|302669634|ref|YP_003829594.1| cell wall binding domain-containing protein [Butyrivibrio
           proteoclasticus B316]
 gi|302394107|gb|ADL33012.1| cell wall binding domain-containing protein [Butyrivibrio
           proteoclasticus B316]
          Length = 1802

 Score = 43.4 bits (101), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAA--DQQPAIAITDTNN 51
           F  L  H++YS  +GA S +   +  A   D    +A+TD +N
Sbjct: 677 FGQLHSHTNYS--DGAGSCDEAFNHAANEVDNLDFLAVTDHSN 717


>gi|149919633|ref|ZP_01908112.1| PHP-like protein [Plesiocystis pacifica SIR-1]
 gi|149819576|gb|EDM79004.1| PHP-like protein [Plesiocystis pacifica SIR-1]
          Length = 743

 Score = 43.4 bits (101), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++ S  +G  SL ++  K AA     IAITD 
Sbjct: 347 LHMHTTDS--DGRGSLRDMAAKAAALGHRYIAITDH 380


>gi|85704469|ref|ZP_01035571.1| hypothetical protein ROS217_05304 [Roseovarius sp. 217]
 gi|85670877|gb|EAQ25736.1| hypothetical protein ROS217_05304 [Roseovarius sp. 217]
          Length = 307

 Score = 43.4 bits (101), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS  S  +G L    +  + AA+    IA+TD 
Sbjct: 16 LHTHSDRS--DGVLPPEEVCRRYAAEGYDFIALTDH 49


>gi|171316185|ref|ZP_02905409.1| helix-hairpin-helix motif [Burkholderia ambifaria MEX-5]
 gi|171098694|gb|EDT43489.1| helix-hairpin-helix motif [Burkholderia ambifaria MEX-5]
          Length = 114

 Score = 43.4 bits (101), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882
                   +     +L  IKG+G   A+ I++   A  PF + +D  SRV  K +    +
Sbjct: 17  SAWAAVDVNTANEDALVGIKGIGPARAKAILDERGAHGPFRNADDLASRV--KGMGGHTV 74

Query: 883 ESLVFAGA 890
           E L   G 
Sbjct: 75  ERLQQEGL 82


>gi|222053564|ref|YP_002535926.1| PHP domain protein [Geobacter sp. FRC-32]
 gi|221562853|gb|ACM18825.1| PHP domain protein [Geobacter sp. FRC-32]
          Length = 236

 Score = 43.4 bits (101), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 20/58 (34%)

Query: 15 QVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN-NL--------FSALEF 58
            H+     +YS      ++N + +  A     AIA+TD    +        F A+ F
Sbjct: 8  HTHTIASGHAYS------TVNELAEAAARKGLKAIALTDHGPAMPGGPHLYHFGAIRF 59


>gi|297620436|ref|YP_003708573.1| UvrABC system protein B [Waddlia chondrophila WSU 86-1044]
 gi|297375737|gb|ADI37567.1| UvrABC system protein B [Waddlia chondrophila WSU 86-1044]
          Length = 668

 Score = 43.4 bits (101), Expect = 0.23,   Method: Composition-based stats.
 Identities = 60/390 (15%), Positives = 117/390 (30%), Gaps = 51/390 (13%)

Query: 164 SQVAEKRLLTFKKLFGDRLYV---------NLQRHRGYDRYRESQVVQLAYTHELPLVAT 214
            + A +  +++   +    Y+         ++  +   D+ R S    L    ++ +VA+
Sbjct: 80  PENAVEYFVSYYDYYQPEAYIPRTDTFIEKDMSINDRIDKMRLSATRSLLEREDVLIVAS 139

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS------------EMVS 262
            + ++          + + +       + D      +   K               E++ 
Sbjct: 140 VSCIYGLGSPEYYRGMNLHIKTGVEYRRDDLLLHLVEMQYKRNDYDFFRATFRVRGEIID 199

Query: 263 IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE-----EENELRNKAVA 317
           IF    E L   +E        L    P+  + I    +             E+R +A+ 
Sbjct: 200 IFPAYEEDLALRLEFFGDELERLTEIDPLTGKMIRLIDEATIYPSSHHVTPEEIRLQAIE 259

Query: 318 ----GLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                LE R+A      K    Q  ++R  ++L +I  + F            +++    
Sbjct: 260 TIKAELEERMAYFDREKKLIELQRIQERTRYDLEMIKEVGFCKGIE------NYSRHFGR 313

Query: 373 PVGPGRGSGAGSVTAYA----LTITDIDPLRFSLLFERFLNPDRM---SMPDFDIDFCQD 425
                 G     +  Y     L I D        L     N DR    S+ DF       
Sbjct: 314 R---EEGQAPSCLLDYFPSNYLLIVDESHQTIPQLHA-MFNGDRARKQSLVDFGFRLPSA 369

Query: 426 RRDEVIRYVQNKYGHER--VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +  +R+ +  Y      V    T G  + K A   +   +  P   +D + +  P   
Sbjct: 370 YDNRPLRF-EETYSRINQVVYVSATPGEWEIKEAAGLLVEQVIRPTGLLDPIIETRPAVG 428

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLE 513
               +L  I  ++      L      RL E
Sbjct: 429 QVDDALDEIRRETLKGNRVLVTTLTKRLAE 458


>gi|70607163|ref|YP_256033.1| hypothetical protein Saci_1410 [Sulfolobus acidocaldarius DSM
          639]
 gi|68567811|gb|AAY80740.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
          Length = 223

 Score = 43.4 bits (101), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
           VHS +S  +G  S  NI+         AIA+TD + 
Sbjct: 6  HVHSFFS--DGRESPLNIIKYALRIGLDAIALTDHDT 40


>gi|314933340|ref|ZP_07840705.1| DNA-dependent DNA polymerase family X [Staphylococcus caprae C87]
 gi|313653490|gb|EFS17247.1| DNA-dependent DNA polymerase family X [Staphylococcus caprae C87]
          Length = 570

 Score = 43.0 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+  +++   A     + ITD 
Sbjct: 337 HMHTTYS--DGANSIREMVEANIAKGYKFMVITDH 369


>gi|284166936|ref|YP_003405215.1| PHP domain protein [Haloterrigena turkmenica DSM 5511]
 gi|284016591|gb|ADB62542.1| PHP domain protein [Haloterrigena turkmenica DSM 5511]
          Length = 249

 Score = 43.0 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            VHS  S  +G   +  IL++ A      + ITD + +  +L  ++ A   G+  I G +
Sbjct: 12  HVHSDDSY-DGHEPIELILEQAADIGLDGVVITDHDEIGESLRAAELAPEYGLIGIPGVE 70

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           +       L +  + +       +  +      G
Sbjct: 71  VSTRHGHLLAIGVEERPDPGQPFTETVAAVRDLG 104


>gi|223985286|ref|ZP_03635366.1| hypothetical protein HOLDEFILI_02672 [Holdemania filiformis DSM
          12042]
 gi|223962742|gb|EEF67174.1| hypothetical protein HOLDEFILI_02672 [Holdemania filiformis DSM
          12042]
          Length = 293

 Score = 43.0 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H S S  +   S++ IL      Q   IAI+D N +  ALE   KA A GI+ + G 
Sbjct: 5  LHIHCSASF-DATESVDTILRLAREQQLDLIAISDHNEIDGALELETKASAVGIETLRGI 63

Query: 74 QLDIDMQDNL 83
          ++D     N+
Sbjct: 64 EIDCFFGRNI 73


>gi|150007735|ref|YP_001302478.1| metal-dependent phosphoesterase [Parabacteroides distasonis ATCC
          8503]
 gi|255013560|ref|ZP_05285686.1| metal-dependent phosphoesterase [Bacteroides sp. 2_1_7]
 gi|256840001|ref|ZP_05545510.1| metal-dependent phosphoesterase [Parabacteroides sp. D13]
 gi|298375680|ref|ZP_06985637.1| PHP domain-containing protein [Bacteroides sp. 3_1_19]
 gi|149936159|gb|ABR42856.1| predicted metal-dependent phosphoesterase [Parabacteroides
          distasonis ATCC 8503]
 gi|256738931|gb|EEU52256.1| metal-dependent phosphoesterase [Parabacteroides sp. D13]
 gi|298268180|gb|EFI09836.1| PHP domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 248

 Score = 43.0 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 1  LTQYLEKSPSFVHLQVHSSYSLLEGA-LSLNNILDKIAADQQPAIAITDTNN 51
          + QYL        L +H+  S      +S + I+ +  A    AIAITD N 
Sbjct: 1  MKQYL------ADLHIHTCLSPCGSLEMSPSEIVRRSLAKGLDAIAITDHNT 46


>gi|33326782|gb|AAQ08813.1| BzdU [Azoarcus sp. CIB]
          Length = 212

 Score = 43.0 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ YS  +  L   +++ +        + IT+ 
Sbjct: 6  HCHTKYSY-DNWLEPVDLIRRAKELGLDGVCITEH 39


>gi|89900706|ref|YP_523177.1| hypothetical protein Rfer_1920 [Rhodoferax ferrireducens T118]
 gi|89345443|gb|ABD69646.1| conserved hypothetical protein [Rhodoferax ferrireducens T118]
          Length = 183

 Score = 43.0 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN---RRVLESLVFAGA 890
           L  IKG+G  T + I+       F S +DF +RV         +   E L  +GA
Sbjct: 48  LDGIKGIGPVTTKLIISERKKGEFKSWDDFVTRVKGVGDKNAAKFSAEGLTVSGA 102


>gi|14520594|ref|NP_126069.1| hypothetical protein PAB0252 [Pyrococcus abyssi GE5]
 gi|5457810|emb|CAB49300.1| Predicted RNA-binding protein [Pyrococcus abyssi GE5]
          Length = 209

 Score = 43.0 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             +SL  + G+G      I+E    KPF+S ED   RV       +++   + 
Sbjct: 132 RLHSLELLPGIGKKHMWDILEEREKKPFESFEDLKKRVKGLPDPVKMIAKRIL 184


>gi|156740035|ref|YP_001430164.1| phosphotransferase domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156231363|gb|ABU56146.1| PHP domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 580

 Score = 43.0 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
           L +HS++S  +G   +  + +         IAITD +             
Sbjct: 345 LHLHSTWS--DGRADIRTMAEAARTRGYSHIAITDHSAYMGMTHGLDAER 392


>gi|18369661|emb|CAD21634.1| hypothetical protein [Azoarcus evansii]
          Length = 213

 Score = 43.0 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ YS  +  L   +++ +        + IT+ 
Sbjct: 6  HCHTKYSY-DNWLEPVDLIRRAKELGLDGVCITEH 39


>gi|304316242|ref|YP_003851387.1| PHP domain protein [Thermoanaerobacterium thermosaccharolyticum
          DSM 571]
 gi|302777744|gb|ADL68303.1| PHP domain protein [Thermoanaerobacterium thermosaccharolyticum
          DSM 571]
          Length = 243

 Score = 43.0 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          F     H+ +S   G  ++ + +          IAITD  
Sbjct: 4  FADYHTHTVFS--HGKGTIEDNVKAAIKMGLREIAITDHG 41


>gi|148656671|ref|YP_001276876.1| phosphotransferase domain-containing protein [Roseiflexus sp.
          RS-1]
 gi|148568781|gb|ABQ90926.1| PHP C-terminal domain protein [Roseiflexus sp. RS-1]
          Length = 352

 Score = 43.0 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L +H+ +S  +G+ S+ ++           I ITD ++L
Sbjct: 8  LHMHTRFS--DGSGSVEDLARAACDAGLRWIIITDHDDL 44


>gi|73542247|ref|YP_296767.1| hypothetical protein Reut_A2562 [Ralstonia eutropha JMP134]
 gi|72119660|gb|AAZ61923.1| conserved hypothetical protein [Ralstonia eutropha JMP134]
          Length = 112

 Score = 43.0 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G  TA++I++      P+ S  D   RV      
Sbjct: 36  ALTSVKGIGPATAKNIIDERTKHGPYKSAADLAERVSGVGAK 77


>gi|330685727|gb|EGG97363.1| PHP domain protein [Staphylococcus epidermidis VCU121]
          Length = 570

 Score = 43.0 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 336 LHMHTTYS--DGAFSIRDMIEANIAKGYEFMVITDH 369


>gi|325969172|ref|YP_004245364.1| PHP C-terminal domain protein [Vulcanisaeta moutnovskia 768-28]
 gi|323708375|gb|ADY01862.1| PHP C-terminal domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 250

 Score = 43.0 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          L  HS YS  +G     +++          ++ITD +    +L+  +   + G+
Sbjct: 34 LHTHSIYS--DGRGDPRDVIKSALDRGIGLLSITDHDTFKGSLKALEFIRSNGL 85


>gi|320156840|ref|YP_004189219.1| putative metal-dependent phosphoesterases (PHP family) [Vibrio
          vulnificus MO6-24/O]
 gi|319932152|gb|ADV87016.1| predicted metal-dependent phosphoesterases (PHP family) [Vibrio
          vulnificus MO6-24/O]
          Length = 293

 Score = 43.0 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  S   ++++        +A+TD + + +   +          I+ I 
Sbjct: 5  LHSHTTAS--DGRFSPQELIERALTLDLDVLAVTDHDTVEALAEIHRYVDEKQLPIKIIN 62


>gi|2222700|emb|CAB09923.1| hypothetical protein MLCL383.21 [Mycobacterium leprae]
          Length = 257

 Score = 43.0 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 374 VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
           +   RGS A S   YAL +T +DP+   LLFE   +             C        R 
Sbjct: 1   MCQSRGSAAKSEVRYALGVTAVDPVANKLLFE---SNTWAGWVVGSTTACAGCTAPPTRL 57

Query: 434 VQNKYGHERVAQIITF 449
           +   Y    V+ +  F
Sbjct: 58  IDRTYEKLEVSSVSAF 73


>gi|326318413|ref|YP_004236085.1| PHP domain-containing protein [Acidovorax avenae subsp. avenae
          ATCC 19860]
 gi|323375249|gb|ADX47518.1| PHP domain protein [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 288

 Score = 43.0 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L  HS  S  +G L+   +  +  A+     A+TD + +  
Sbjct: 10 LHCHSVVS--DGTLTPEALAQRARANGVELWALTDHDEVGG 48


>gi|110669313|ref|YP_659124.1| hypothetical protein HQ3441A [Haloquadratum walsbyi DSM 16790]
 gi|109627060|emb|CAJ53538.1| conserved hypothetical protein [Haloquadratum walsbyi DSM 16790]
          Length = 271

 Score = 43.0 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
            +PS   L +H++ S  +G L+++ + +         +A+TD +
Sbjct: 8  TDAPS-ADLHIHTTAS--DGLLTIDELPEVAHKAGIDTVAVTDHD 49


>gi|222478452|ref|YP_002564689.1| PHP domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222451354|gb|ACM55619.1| PHP domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 269

 Score = 43.0 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  H++ S  +G ++ + ++D         +AITD +
Sbjct: 10 LHAHTTVS--DGTMTADELVDVARETGLDWVAITDHD 44


>gi|33602434|ref|NP_889994.1| hypothetical protein BB3461 [Bordetella bronchiseptica RB50]
 gi|33576873|emb|CAE33953.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 194

 Score = 43.0 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
           L  ++GVG  TAR I+E       F SLED   RV    L +  ++SL  AG 
Sbjct: 115 LETVRGVGPRTARVIIEERQRGGRFLSLEDLSERVSGIGLKK--MQSLQAAGL 165


>gi|262203261|ref|YP_003274469.1| PHP domain-containing protein [Gordonia bronchialis DSM 43247]
 gi|262086608|gb|ACY22576.1| PHP domain protein [Gordonia bronchialis DSM 43247]
          Length = 349

 Score = 43.0 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H+ +S  +G   L  +    AA  Q  +AITD 
Sbjct: 112 LHAHTDWS--DGGAPLWEMASAAAAFGQDWLAITDH 145


>gi|189230288|ref|NP_001121468.1| DENN/MADD domain containing 5A [Xenopus (Silurana) tropicalis]
 gi|183986178|gb|AAI66235.1| LOC100158564 protein [Xenopus (Silurana) tropicalis]
          Length = 1285

 Score = 43.0 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 76/252 (30%), Gaps = 50/252 (19%)

Query: 778 WMKTHYPVEF--------LAASMTLEMDNVEKIKKFCQDARQF--NIQIMPPSVNTPCVD 827
           W K + P ++         +  + L+ D  EK   + Q+AR     I+  P   N     
Sbjct: 686 WTKRNAPAQWRRKDRQKQHSEHLRLDNDQREK---YIQEARNMSSGIRQ-PKLSNLSPSV 741

Query: 828 FKVGDNRIYYSL----------AAIKGVGTTTAR------HIMEASADKPFDSLEDFCSR 871
               + +    L            ++ +G            I     +    SL D   R
Sbjct: 742 IAQTNWKFVEGLLKECRNKTKRMLVEKMGREAVELGHGEVSITGVEENALIASLCDLLER 801

Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
           + S  L  +  +S +++  L      R     SL          E+ +++    ++  + 
Sbjct: 802 IWSHGLQVKQGKSALWSHLLHYQDSRRRATWGSLGGT-DLVLDCERRKSDPFLVMYPLKI 860

Query: 932 GTFSDKITLEKFSV-------ENSSVRFENEQRVLGFYFSGHPLDVY-------KPILRK 977
               D   ++             + VR   E+++L    S H L          K + ++
Sbjct: 861 SLVQDMRHIQNIGEIKTDVGKARAWVRLSMEKKLL----SRH-LKQLLLDHDLSKKLYKR 915

Query: 978 MGIKGYEESVAT 989
                 ++    
Sbjct: 916 YAFLRCDDEKEQ 927


>gi|92119329|ref|YP_579058.1| hypothetical protein Nham_3908 [Nitrobacter hamburgensis X14]
 gi|91802223|gb|ABE64598.1| hypothetical protein Nham_3908 [Nitrobacter hamburgensis X14]
          Length = 71

 Score = 43.0 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 8  SPSFVHLQVHSSYSLLEGALSLNNILD 34
          +  +  LQV S +S L GA S   +  
Sbjct: 2  TSRYAELQVTSHFSFLRGASSCEELFA 28


>gi|305662786|ref|YP_003859074.1| PHP domain protein [Ignisphaera aggregans DSM 17230]
 gi|304377355|gb|ADM27194.1| PHP domain protein [Ignisphaera aggregans DSM 17230]
          Length = 335

 Score = 43.0 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  H+  S  +G LS  N+++   +     IAITD  
Sbjct: 13 LHCHTLNS--DGLLSPENVVEFYRSRGYGVIAITDHG 47


>gi|319789314|ref|YP_004150947.1| PHP domain protein [Thermovibrio ammonificans HB-1]
 gi|317113816|gb|ADU96306.1| PHP domain protein [Thermovibrio ammonificans HB-1]
          Length = 281

 Score = 43.0 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +G  + + +++          ++TD + +    +   +    G+  I 
Sbjct: 8  VDLHSHSTAS--DGTFTPSELVELAHLKGITLFSLTDHDTVDGLPQARLRGRELGVNVIP 65

Query: 72 GCQLDID 78
          G ++  D
Sbjct: 66 GIEVTAD 72


>gi|254431448|ref|ZP_05045151.1| PHP domain protein [Cyanobium sp. PCC 7001]
 gi|197625901|gb|EDY38460.1| PHP domain protein [Cyanobium sp. PCC 7001]
          Length = 223

 Score = 43.0 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
             P+  +   H+  S  +G+L+   +  +  A     +A+TD + L
Sbjct: 23 ASCPTRFNFHCHTICS--DGSLTPEGLAHQALAIGLDHLAVTDHHAL 67


>gi|159028894|emb|CAO90699.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 516

 Score = 43.0 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
            H+  EF     T ++   E IK   +     + +  P S+          +      L 
Sbjct: 413 AHFDREFQYLYRTAKLGLPETIKNRIE----RDRKNCPQSLTIKSDRLINLNTATKEELD 468

Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCS 870
            + G+    A  I+ A   KPF SLED   
Sbjct: 469 TLPGISGKLAEKIIAARQQKPFTSLEDLDR 498


>gi|163815110|ref|ZP_02206491.1| hypothetical protein COPEUT_01266 [Coprococcus eutactus ATCC
          27759]
 gi|158449519|gb|EDP26514.1| hypothetical protein COPEUT_01266 [Coprococcus eutactus ATCC
          27759]
          Length = 282

 Score = 43.0 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           +HS +S  + +  L++I+ K      P I +TD +
Sbjct: 16 HIHSEFSS-DSSAPLDSIIQKAIQLGIPKICLTDHH 50


>gi|212223554|ref|YP_002306790.1| hypothetical protein TON_0408 [Thermococcus onnurineus NA1]
 gi|212008511|gb|ACJ15893.1| hypothetical protein, conserved [Thermococcus onnurineus NA1]
          Length = 206

 Score = 43.0 bits (100), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             +SL  + G+G      I+E    +PF S ED   RV       +++   V     +  
Sbjct: 133 RLHSLELLPGIGKKHMWEIIEERKKEPFKSFEDLRHRVKGLPDPAKMITKRV---VDELE 189

Query: 895 GYSRMQLL 902
           G  R +L 
Sbjct: 190 GKDRYRLF 197


>gi|218440024|ref|YP_002378353.1| helix-hairpin-helix motif protein [Cyanothece sp. PCC 7424]
 gi|218172752|gb|ACK71485.1| helix-hairpin-helix motif protein [Cyanothece sp. PCC 7424]
          Length = 543

 Score = 43.0 bits (100), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 1/109 (0%)

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
           +I  ++  +  H+  EF        +     I +  +  RQ   Q   P           
Sbjct: 420 LIILESPIVAAHFQQEFERLYQKASLGIPTYIAQKIEQDRQTCSQFTTPVSQVAERQLIN 479

Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +      L  + G+G + A+ I++   +KPF S++D   RV     N+
Sbjct: 480 LNTATLAELETLPGIGPSLAQKIIKTREEKPFTSVQDL-ERVAGIGENK 527


>gi|220916495|ref|YP_002491799.1| PHP domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954349|gb|ACL64733.1| PHP domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 592

 Score = 43.0 bits (100), Expect = 0.27,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
             H+++S  +G  S+  +     A     + +TD +    
Sbjct: 362 HCHTTWS--DGRASVEEMARAAEALGMAYLTVTDHSGSAG 399


>gi|297583685|ref|YP_003699465.1| PHP domain-containing protein [Bacillus selenitireducens MLS10]
 gi|297142142|gb|ADH98899.1| PHP domain protein [Bacillus selenitireducens MLS10]
          Length = 575

 Score = 43.0 bits (100), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S++ +++         +AITD 
Sbjct: 342 LHMHTTWS--DGAQSIDEMIEACRMKGHAFMAITDH 375


>gi|86158982|ref|YP_465767.1| phosphoesterase, PHP-like [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775493|gb|ABC82330.1| phosphoesterase, PHP-like protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 592

 Score = 43.0 bits (100), Expect = 0.27,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
             H+++S  +G  S+  +     A     + +TD +    
Sbjct: 362 HCHTTWS--DGRASVEEMARAAEALGMAYLTVTDHSGSAG 399


>gi|121606164|ref|YP_983493.1| phosphotransferase domain-containing protein [Polaromonas
          naphthalenivorans CJ2]
 gi|120595133|gb|ABM38572.1| PHP C-terminal domain protein [Polaromonas naphthalenivorans CJ2]
          Length = 287

 Score = 43.0 bits (100), Expect = 0.27,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  S  +G L+   + ++   +     A+TD +
Sbjct: 11 LHCHSVVS--DGTLTPEALAERAKNNGVELWALTDHD 45


>gi|325679360|ref|ZP_08158945.1| histidinol phosphate phosphatase HisJ family [Ruminococcus albus
          8]
 gi|324108957|gb|EGC03188.1| histidinol phosphate phosphatase HisJ family [Ruminococcus albus
          8]
          Length = 282

 Score = 43.0 bits (100), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 9/50 (18%)

Query: 15 QVHSSYS--LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            HSS+S    + A     + +K A     A A+TD  +    + F ++A
Sbjct: 9  HTHSSHSPDADDSAS---AMCEKAAELGMKAYALTDHCD----VNFWEEA 51


>gi|189345929|ref|YP_001942458.1| ATP-dependent DNA helicase RecG [Chlorobium limicola DSM 245]
 gi|189340076|gb|ACD89479.1| ATP-dependent DNA helicase RecG [Chlorobium limicola DSM 245]
          Length = 706

 Score = 43.0 bits (100), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW-VTFSEPAKEYEAN 1030
            +  L +  I+   E  A   G  + +   V+  + + T+ G R+ + V  ++     E  
Sbjct: 38   RRYLDRRTIRRIGELRA---GEAVTVVGTVLQARLEGTQPG-RMRFKVVLADGTGSIELT 93

Query: 1031 FF 1032
            +F
Sbjct: 94   WF 95


>gi|187923805|ref|YP_001895447.1| DNA uptake protein, ComEA-like protein [Burkholderia phytofirmans
           PsJN]
 gi|187714999|gb|ACD16223.1| putative DNA uptake protein, ComEA-like protein [Burkholderia
           phytofirmans PsJN]
          Length = 196

 Score = 43.0 bits (100), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   A+ I++    + PF   +D  +RV      
Sbjct: 33  ALESVKGIGPVHAKAIIDERTKNGPFKDADDLATRVKGIGTK 74


>gi|296159955|ref|ZP_06842775.1| helix-hairpin-helix motif protein [Burkholderia sp. Ch1-1]
 gi|295889701|gb|EFG69499.1| helix-hairpin-helix motif protein [Burkholderia sp. Ch1-1]
          Length = 121

 Score = 43.0 bits (100), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 11/68 (16%)

Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
           F        VNT   D          +L  IKG+G   A+ I++   A  PF    D   
Sbjct: 15  FGHAYAAVDVNTANED----------ALRGIKGIGPAKAKAILDERAAHGPFKDPADLGK 64

Query: 871 RVDSKKLN 878
           RV     +
Sbjct: 65  RVKGMGGH 72


>gi|299822578|ref|ZP_07054464.1| cell division topological specificity factor MinE [Listeria grayi
           DSM 20601]
 gi|299816107|gb|EFI83345.1| cell division topological specificity factor MinE [Listeria grayi
           DSM 20601]
          Length = 570

 Score = 43.0 bits (100), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 9/57 (15%)

Query: 3   QYLEKSPSFVH-------LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           + +++  +F+        L +H+++S  +GA SL  +++   A +   + ITD    
Sbjct: 321 ERIKRQSTFIEEKDIRGDLHMHTTWS--DGAYSLPEMIEACIAKKYEYMVITDHGGF 375


>gi|218709946|ref|YP_002417567.1| hypothetical protein VS_1964 [Vibrio splendidus LGP32]
 gi|218322965|emb|CAV19142.1| hypothetical metal-dependent phosphoesterase YciV [Vibrio
          splendidus LGP32]
          Length = 307

 Score = 43.0 bits (100), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          L  H++ S  +G L+   ++D+        +AITD +      E 
Sbjct: 28 LHSHTTAS--DGRLTPPELIDRALGFNIEVLAITDHDTTDGLAEA 70


>gi|312127261|ref|YP_003992135.1| histidinol phosphate phosphatase hisj family
          [Caldicellulosiruptor hydrothermalis 108]
 gi|311777280|gb|ADQ06766.1| histidinol phosphate phosphatase HisJ family
          [Caldicellulosiruptor hydrothermalis 108]
          Length = 266

 Score = 43.0 bits (100), Expect = 0.28,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           +HS++S  +  +S+ + + K        IA TD  +L
Sbjct: 5  HIHSNFSS-DSNMSMEDAVKKAIELNLDEIAFTDHMDL 41


>gi|172059989|ref|YP_001807641.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Burkholderia ambifaria MC40-6]
 gi|171992506|gb|ACB63425.1| helix-hairpin-helix motif protein [Burkholderia ambifaria MC40-6]
          Length = 114

 Score = 43.0 bits (100), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882
                   +     +L  IKG+G   A+ I++   A  PF + ED  SRV  K +    +
Sbjct: 17  SAWAAVDVNTANEDALVGIKGIGPARAKAILDERGARGPFRNAEDLASRV--KGMGGHTV 74

Query: 883 ESLVFAGA 890
           E L   G 
Sbjct: 75  ERLQQEGL 82


>gi|323451853|gb|EGB07729.1| hypothetical protein AURANDRAFT_64732 [Aureococcus anophagefferens]
          Length = 1021

 Score = 43.0 bits (100), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL---NRRVLESLVFAGALDCFGYSR 898
           + G+G   AR ++EA A++PFD L++  +R+   K    N   L + VFA        ++
Sbjct: 103 LAGIGVVRARRVVEARAERPFDDLDEALARLGLSKRQAENIDSLPATVFAEQESPLALAQ 162

Query: 899 MQLLQSLDNI 908
                +L   
Sbjct: 163 RVAASALRRA 172


>gi|284166689|ref|YP_003404968.1| histidinol phosphate phosphatase HisJ family [Haloterrigena
          turkmenica DSM 5511]
 gi|284016344|gb|ADB62295.1| histidinol phosphate phosphatase HisJ family [Haloterrigena
          turkmenica DSM 5511]
          Length = 268

 Score = 43.0 bits (100), Expect = 0.29,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 9/41 (21%)

Query: 15 QVHSSYS---LLEGALSLNNILDKIAADQQPAIAITDTNNL 52
            H++YS    L G      ++          I +TD   +
Sbjct: 5  HAHTNYSDGKFLRG------MVQAAEEAGLEGIGLTDHCTI 39


>gi|258517036|ref|YP_003193258.1| PHP domain-containing protein [Desulfotomaculum acetoxidans DSM
          771]
 gi|257780741|gb|ACV64635.1| PHP domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 245

 Score = 43.0 bits (100), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          F     H+ +S  +G  ++       AA     +AITD  
Sbjct: 4  FADYHTHTVFS--DGLGTVRENAASAAARGLSEVAITDHG 41


>gi|282850157|ref|ZP_06259536.1| PHP domain protein [Veillonella parvula ATCC 17745]
 gi|294793670|ref|ZP_06758807.1| PHP domain protein [Veillonella sp. 3_1_44]
 gi|282579650|gb|EFB85054.1| PHP domain protein [Veillonella parvula ATCC 17745]
 gi|294455240|gb|EFG23612.1| PHP domain protein [Veillonella sp. 3_1_44]
          Length = 275

 Score = 43.0 bits (100), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
          V   +HS +S  +G  +  ++L          +A+TD + +   ++  + A         
Sbjct: 3  VDFHMHSIFS--DGVETPKDLLQHAIDCNVSMMALTDHDEIDG-IQALRAAQKKLDPNES 59

Query: 67 IQPIIGCQLDIDMQDN 82
          I+ + GC+   D +D 
Sbjct: 60 IKIVNGCEFSADYKDK 75


>gi|28493533|ref|NP_787694.1| ATP-dependent DNA helicase [Tropheryma whipplei str. Twist]
 gi|28476575|gb|AAO44663.1| ATP-dependent DNA helicase [Tropheryma whipplei str. Twist]
          Length = 768

 Score = 43.0 bits (100), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            R +      +    I G+ + +   V+S +Q+KT  G+    VT S+     +  FF
Sbjct: 119  RYICRGKLTKLSELIPGDEVTIVGRVLSTEQRKTFSGANFLSVTLSDGENIIQLVFF 175


>gi|14591573|ref|NP_143655.1| hypothetical protein PH1822 [Pyrococcus horikoshii OT3]
 gi|3258258|dbj|BAA30941.1| 205aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 205

 Score = 43.0 bits (100), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%)

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             +SL  + G+G      I+E    KPF++ ED   RV       +++   + 
Sbjct: 132 RLHSLELLPGIGKKHMWSIIEEREKKPFENFEDLKKRVKGLPDPVKMIARRIL 184


>gi|269959635|ref|ZP_06174015.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835558|gb|EEZ89637.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 292

 Score = 43.0 bits (100), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 3/98 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ-PIIG 72
           L  H++ S  +G  + ++++D+  +     +AITD + +       Q      +   II 
Sbjct: 5   LHSHTTAS--DGRFAPHDLVDRALSFDIEVLAITDHDTVDGLAPAKQYVEENNLPIKIIN 62

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
                 +  N  +   G    P  P++  L+   + ++
Sbjct: 63  GIEISTVWQNKDIHIVGLNIDPESPALAELIQQQKAHR 100


>gi|292654904|ref|YP_003534801.1| DNA polymerase X [Haloferax volcanii DS2]
 gi|291371449|gb|ADE03676.1| DNA polymerase X [Haloferax volcanii DS2]
          Length = 582

 Score = 42.7 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H+  S  +G  S+  ++   A       A+TD 
Sbjct: 352 LHTHTDRS--DGDNSIAEMVAAAAERGYDYHAVTDH 385


>gi|313893381|ref|ZP_07826953.1| PHP domain protein [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442022|gb|EFR60442.1| PHP domain protein [Veillonella sp. oral taxon 158 str. F0412]
          Length = 275

 Score = 42.7 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 43/147 (29%), Gaps = 24/147 (16%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL--------------- 56
           V   +HS YS  +G  +   +L          +A+TD +                     
Sbjct: 3   VDFHMHSVYS--DGIETPKELLRHALDCNVSMMALTDHDETDGIKALRTAQQELDPHETI 60

Query: 57  ------EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
                 EFS       I  +  C  + + + N  +T   +     V  ++      EGY 
Sbjct: 61  KIINGCEFSADYKDKSIHILGYCFDENNKELNEFITFFKRKREERVDEMIRRC-NIEGYH 119

Query: 111 RLIELVSRMYLLDQGKQSVRICLSWLQ 137
              E + + +   +      I    + 
Sbjct: 120 ITKEDLIKQFPDTKAYGRPHIGKLLID 146


>gi|28572355|ref|NP_789135.1| ATP-dependent DNA helicase RecG [Tropheryma whipplei TW08/27]
 gi|28410486|emb|CAD66872.1| ATP-dependent DNA helicase RecG [Tropheryma whipplei TW08/27]
          Length = 673

 Score = 42.7 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            R +      +    I G+ + +   V+S +Q+KT  G+    VT S+     +  FF
Sbjct: 24   RYICRGKLTKLSELIPGDEVTIVGRVLSTEQRKTFSGANFLSVTLSDGENIIQLVFF 80


>gi|78212889|ref|YP_381668.1| phosphoesterase PHP-like [Synechococcus sp. CC9605]
 gi|78197348|gb|ABB35113.1| Phosphoesterase PHP-like [Synechococcus sp. CC9605]
          Length = 215

 Score = 42.7 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            H+  S  +G+L    ++ +        +A+TD ++
Sbjct: 24 HCHTVCS--DGSLEPIELIWQATERGLKHLAVTDHHS 58


>gi|328951369|ref|YP_004368704.1| PHP domain protein [Marinithermus hydrothermalis DSM 14884]
 gi|328451693|gb|AEB12594.1| PHP domain protein [Marinithermus hydrothermalis DSM 14884]
          Length = 536

 Score = 42.7 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 11/69 (15%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H++YS  +GA SL  + +   A     + ++D          SQ A  AG   +   +
Sbjct: 306 HAHTTYS--DGAASLREMAEAARARGYRYLVVSDH---------SQAAAYAGGLDLEALE 354

Query: 75  LDIDMQDNL 83
                 D L
Sbjct: 355 AQWAEIDRL 363


>gi|167841219|ref|ZP_02467903.1| hypothetical protein Bpse38_31385 [Burkholderia thailandensis
           MSMB43]
          Length = 105

 Score = 42.7 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
           +L  I+G+G   A+ I++   A  PF    D   RV  K +  + +E L   G 
Sbjct: 31  ALRGIRGIGPAKAKAIVDERAAHGPFKDAADLAHRV--KGMGGKTVERLQAEGL 82


>gi|323702092|ref|ZP_08113760.1| PHP domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323532974|gb|EGB22845.1| PHP domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 569

 Score = 42.7 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  + A+ L +++ +         AITD 
Sbjct: 340 LHIHTTWS--DSAMDLADVVQRCQEKGYTYAAITDH 373


>gi|37679407|ref|NP_934016.1| metal-dependent phosphoesterase [Vibrio vulnificus YJ016]
 gi|37198150|dbj|BAC93987.1| predicted metal-dependent phosphoesterase [Vibrio vulnificus
          YJ016]
          Length = 293

 Score = 42.7 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  S   ++++        +A+TD + + +   +          I+ I 
Sbjct: 5  LHSHTTAS--DGRFSPQELIERALTFNLDVLAVTDHDTVEALAEIHRYVDEKQLPIKIIN 62


>gi|145345363|ref|XP_001417183.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577410|gb|ABO95476.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 137

 Score = 42.7 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                E+ A+     + +   VV K+++K  K       T  + +   E   +
Sbjct: 13   TKASETKASFVARRVEVCGFVVEKRRRKDSK----VIFTVDDGSGCVECVVW 60


>gi|115974961|ref|XP_001186049.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 1629

 Score = 42.7 bits (99), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 19/161 (11%)

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            PF+       R      N      ++  G +D     R Q+L ++   + YA  + K   
Sbjct: 809  PFEDKLSEDDRRLMLVCNLPEALEVMEEGMMDSLVPRRTQMLPAIKTPRPYALSITKPLL 868

Query: 921  NKHENIFAHE---------KGTFSDKITLEKFSVENSSVRFENEQRVLGF------YFS- 964
            + + N+   +             SDK     +        + NEQR L F      Y   
Sbjct: 869  SGY-NLGEADFRSKNRLLVSAVLSDKFAGRPWMKFLVRYGYSNEQRYLRFWHAAQEYLDA 927

Query: 965  GHPLDVYKPILRKMGIKG--YEESVATIRGNNIRLAAMVVS 1003
             HP+   +  L +  + G      +       +R+  ++ +
Sbjct: 928  AHPIAAMRQNLMRQKLAGELITNFLQPADDRKVRIGRLLTA 968


>gi|57640835|ref|YP_183313.1| hypothetical protein TK0900 [Thermococcus kodakarensis KOD1]
 gi|57159159|dbj|BAD85089.1| hypothetical protein, conserved, DUF655 family [Thermococcus
           kodakarensis KOD1]
          Length = 206

 Score = 42.7 bits (99), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             +SL  + G+G      I+E    +PF S ED   RV       +++   +     D  
Sbjct: 133 RLHSLELLPGIGKKHMWEIIEERQREPFKSFEDLKQRVKGLPDPVKMIAKRIVDELQD-- 190

Query: 895 GYSRMQLLQSLDNIQK 910
              R +L      + +
Sbjct: 191 -KDRYKLFVGHRRLFR 205


>gi|23098430|ref|NP_691896.1| hypothetical protein OB0975 [Oceanobacillus iheyensis HTE831]
 gi|22776656|dbj|BAC12931.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 268

 Score = 42.7 bits (99), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS YS  +G+ +++ ++ +   +    ++  D + + + L+  Q+A    I  I 
Sbjct: 3   VDLHVHSHYS--DGSDAVSKVMKQAKKNGVTHLSFVDHDTVDNLLDIQQQAIHFDIDVIP 60

Query: 72  GCQLD-IDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
           G ++   D +   K+   G    P    I  +  
Sbjct: 61  GIEISAYDFKRKRKVHVLGYNYKPEANHIRNICK 94


>gi|237737445|ref|ZP_04567926.1| histidinol phosphate phosphatase [Fusobacterium mortiferum ATCC
          9817]
 gi|229421307|gb|EEO36354.1| histidinol phosphate phosphatase [Fusobacterium mortiferum ATCC
          9817]
          Length = 271

 Score = 42.7 bits (99), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +HS +S  + +  L  I +K  +     IAITD 
Sbjct: 10 HIHSEFS-GDSSQDLVEIFEKAISLGLEEIAITDH 43


>gi|88812679|ref|ZP_01127926.1| metal-dependent phosphoesterase (PHP family) protein [Nitrococcus
           mobilis Nb-231]
 gi|88790095|gb|EAR21215.1| metal-dependent phosphoesterase (PHP family) protein [Nitrococcus
           mobilis Nb-231]
          Length = 277

 Score = 42.7 bits (99), Expect = 0.32,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 60/242 (24%), Gaps = 51/242 (21%)

Query: 28  SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN----- 82
           S  +++ + A      +A+TD +         + A   G++ I G ++            
Sbjct: 2   SPADLVVRAAERGVRVLALTDHDTTDGLPAACRSAQLRGVELIPGVEVSATWAGRTLHIV 61

Query: 83  ----------------------------LKMTNQGKTPFPTVPSIVLLVS----TAEGYQ 110
                                       +    +G         +  L          Y 
Sbjct: 62  GLGVDADNALLQRGLTNIRSTRLQRAREIGRMLEGAGLEGAWDGVRTLAQGDVVGRAHYA 121

Query: 111 RLIEL------VSRMYLLDQGKQSVR-ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
           RL+ L       S  +     +     + + W       G +   GG +  +        
Sbjct: 122 RLLVLRGLAADPSEAFRRYLRRGRPGYVPVQWADLDEVVGWVHQAGGLA--VLAHPLQYR 179

Query: 164 SQVA--EKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLS 221
              A   + L  F  + GD L +      G    + S     A    L     ++   L 
Sbjct: 180 YPRAFLRRMLAAFAAVGGDALEI---VTGGSTAEQVSTAATYARRLGLAGSLGSDFHTLH 236

Query: 222 EE 223
             
Sbjct: 237 PP 238


>gi|317056323|ref|YP_004104790.1| histidinol phosphate phosphatase HisJ family [Ruminococcus albus
          7]
 gi|315448592|gb|ADU22156.1| histidinol phosphate phosphatase HisJ family [Ruminococcus albus
          7]
          Length = 282

 Score = 42.7 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 5/48 (10%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            HSSYS  +   S   +  K A       A+TD  +    + F ++A
Sbjct: 9  HTHSSYSP-DAEDSAEAMCLKAAELGMSVYALTDHCD----VNFWEEA 51


>gi|226362809|ref|YP_002780587.1| hypothetical protein ROP_33950 [Rhodococcus opacus B4]
 gi|226241294|dbj|BAH51642.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 332

 Score = 42.7 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G   ++ ++   A       A+TD 
Sbjct: 99  LHTHSDWS--DGGSPIDEMMRSAALIGHEYCALTDH 132


>gi|124486408|ref|YP_001031024.1| GTP:adenosylcobinamide-phosphate guanylyltransferase-like protein
          [Methanocorpusculum labreanum Z]
 gi|124363949|gb|ABN07757.1| PHP C-terminal domain protein [Methanocorpusculum labreanum Z]
          Length = 253

 Score = 42.7 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
           VHS+ S  +G      +   +  +   A AITD N +F   E 
Sbjct: 2  HVHSTAS--DGRTQPKTLAKYLNKNDISA-AITDHNVIFGVKEA 42


>gi|92114278|ref|YP_574206.1| competence protein ComEA helix-hairpin-helix region
           [Chromohalobacter salexigens DSM 3043]
 gi|91797368|gb|ABE59507.1| Competence protein ComEA helix-hairpin-helix region
           [Chromohalobacter salexigens DSM 3043]
          Length = 90

 Score = 42.7 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           LA + G+G   A+ I+E   A+ PF SLED        +     LE+ V
Sbjct: 40  LAELPGIGEVKAQAIVEDREANGPFASLEDLTRVSGIGEGTVHDLENRV 88


>gi|150401837|ref|YP_001325603.1| hypothetical protein Maeo_1415 [Methanococcus aeolicus Nankai-3]
 gi|150014540|gb|ABR56991.1| PHP domain protein [Methanococcus aeolicus Nankai-3]
          Length = 217

 Score = 42.7 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G L  + +L +        IAITD 
Sbjct: 6  HTHTVFS--DGELIPSELLRRAIVLNHKTIAITDH 38


>gi|113866831|ref|YP_725320.1| hypothetical protein H16_A0805 [Ralstonia eutropha H16]
 gi|113525607|emb|CAJ91952.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 122

 Score = 42.7 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L ++KGVG  TAR+I++      P+    D   RV      
Sbjct: 43  ALTSVKGVGAATARNIIDERNKRGPYKDAADLAERVSGIGPK 84


>gi|269792380|ref|YP_003317284.1| selenocysteine-specific translation elongation factor
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100015|gb|ACZ19002.1| selenocysteine-specific translation elongation factor
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 629

 Score = 42.7 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 8/125 (6%)

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV----- 184
            +  SWL      GL+ L     G +    F    +  ++ L   +    +R ++     
Sbjct: 477 GLLRSWLGHESLAGLLEL---DEGRVKDPSFARDLEGLDRLLQRLEAHLDERGFLLPELW 533

Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            ++ H G D     +VV LA    L ++   +    S+        L  +   TV + +D
Sbjct: 534 EMRAHLGVDDETFKRVVALAKERGLGVILPGDLFLSSKLRDALWRTLAEMGEITVATVRD 593

Query: 245 RPRVT 249
           R  ++
Sbjct: 594 RLGLS 598


>gi|71908080|ref|YP_285667.1| PHP, C-terminal [Dechloromonas aromatica RCB]
 gi|71847701|gb|AAZ47197.1| PHP, C-terminal [Dechloromonas aromatica RCB]
          Length = 295

 Score = 42.7 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            HS  S  +G L    +  + A +     A+TD +++   +     A   G+  + G +
Sbjct: 25 HCHSIVS--DGLLPPEVVARRAAENGVDLWALTDHDDIGGLVTARTTAEEVGMSFVNGVE 82

Query: 75 LDIDMQ 80
          + I+ +
Sbjct: 83 ISIEWR 88


>gi|94309674|ref|YP_582884.1| helix-hairpin-helix DNA-binding, class 1 [Cupriavidus metallidurans
           CH34]
 gi|93353526|gb|ABF07615.1| conserved hypothetical protein; putative exported protein
           [Cupriavidus metallidurans CH34]
          Length = 126

 Score = 42.7 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 12/99 (12%)

Query: 823 TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881
           +P       ++    +LA +KG+G  TA+ I +    +  F    D   RV    +  + 
Sbjct: 38  SPAYADVDVNSADEVALATVKGIGPATAKRIADERGKNGAFKDANDLVDRVP--GIGPKS 95

Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
           + +L  AG    FG +        D  +K A+   K  T
Sbjct: 96  VANLQAAGL--SFGKT-------PDVARKDARPAPKAAT 125


>gi|284162334|ref|YP_003400957.1| hypothetical protein Arcpr_1232 [Archaeoglobus profundus DSM 5631]
 gi|284012331|gb|ADB58284.1| Protein of unknown function DUF655 [Archaeoglobus profundus DSM
           5631]
          Length = 192

 Score = 42.7 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
           L  + GVG  T   I+E    +PF S ED   R+ 
Sbjct: 131 LELLPGVGKKTMWAIIEERKKEPFKSFEDIAKRIK 165


>gi|172060804|ref|YP_001808456.1| hypothetical protein BamMC406_1755 [Burkholderia ambifaria MC40-6]
 gi|171993321|gb|ACB64240.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6]
          Length = 203

 Score = 42.7 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L A+KG+G   ++ I++    + PF   +D  +RV      
Sbjct: 33  ALEAVKGLGPVKSKAIIDERTKNGPFKDADDLANRVKGLGTK 74


>gi|115351834|ref|YP_773673.1| hypothetical protein Bamb_1783 [Burkholderia ambifaria AMMD]
 gi|115281822|gb|ABI87339.1| conserved hypothetical protein [Burkholderia ambifaria AMMD]
          Length = 203

 Score = 42.7 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L A+KG+G   ++ I++    + PF   +D  +RV      
Sbjct: 33  ALEAVKGLGPVKSKAIIDERTKNGPFKDADDLANRVKGLGTK 74


>gi|134295876|ref|YP_001119611.1| hypothetical protein Bcep1808_1772 [Burkholderia vietnamiensis G4]
 gi|134139033|gb|ABO54776.1| conserved hypothetical protein [Burkholderia vietnamiensis G4]
          Length = 200

 Score = 42.7 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L A+KG+G   ++ I++    + PF   +D  +RV      
Sbjct: 33  ALEAVKGLGPVKSKAIIDERTKNGPFKDADDLANRVKGLGTK 74


>gi|330506782|ref|YP_004383210.1| PHP domain/helix-hairpin-helix motif protein [Methanosaeta concilii
           GP-6]
 gi|328927590|gb|AEB67392.1| PHP domain/helix-hairpin-helix motif protein [Methanosaeta concilii
           GP-6]
          Length = 577

 Score = 42.7 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS +S  +G  S+  +     +     IA++D 
Sbjct: 345 LHVHSIWS--DGRASIIELAQAARSLGYEYIALSDH 378


>gi|312793904|ref|YP_004026827.1| histidinol phosphate phosphatase hisj family
          [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181044|gb|ADQ41214.1| histidinol phosphate phosphatase HisJ family
          [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 266

 Score = 42.7 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           +HS++S  +  +S+ + + K        IA TD  +L
Sbjct: 5  HIHSNFSS-DSNMSMEDAVKKAIELNLDEIAFTDHMDL 41


>gi|154493744|ref|ZP_02033064.1| hypothetical protein PARMER_03085 [Parabacteroides merdae ATCC
          43184]
 gi|154086494|gb|EDN85539.1| hypothetical protein PARMER_03085 [Parabacteroides merdae ATCC
          43184]
          Length = 606

 Score = 42.7 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +H+ YS  +G ++    + +  A+   AI+ITD 
Sbjct: 59 HLHTYYS--DGHVTPEMRVLEAWAEGLDAISITDH 91


>gi|120612351|ref|YP_972029.1| phosphotransferase domain-containing protein [Acidovorax citrulli
          AAC00-1]
 gi|120590815|gb|ABM34255.1| PHP C-terminal domain protein [Acidovorax citrulli AAC00-1]
          Length = 287

 Score = 42.7 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L  HS  S  +G L+   +  +  A+     A+TD + +  
Sbjct: 9  LHCHSVVS--DGTLTPEALAQRARANGVELWALTDHDEVGG 47


>gi|15897766|ref|NP_342371.1| hypothetical protein SSO0873 [Sulfolobus solfataricus P2]
 gi|284175569|ref|ZP_06389538.1| hypothetical protein Ssol98_13075 [Sulfolobus solfataricus 98/2]
 gi|13814053|gb|AAK41161.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261602469|gb|ACX92072.1| PHP domain protein [Sulfolobus solfataricus 98/2]
          Length = 219

 Score = 42.7 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          F  L VHS YS  +G     +I+    A +   +AITD + 
Sbjct: 2  FFDLHVHSRYS--DGKYLPKDIIAYAKA-KHIHVAITDHDT 39


>gi|322368101|ref|ZP_08042670.1| PHP domain protein [Haladaptatus paucihalophilus DX253]
 gi|320552117|gb|EFW93762.1| PHP domain protein [Haladaptatus paucihalophilus DX253]
          Length = 262

 Score = 42.7 bits (99), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
          F  L VH++ S  +GA+ L+ +     +     +AITD + L 
Sbjct: 4  FADLHVHTTNS--DGAMELSEVPSAARSAGVSVVAITDHDRLH 44


>gi|302871532|ref|YP_003840168.1| histidinol phosphate phosphatase HisJ family
          [Caldicellulosiruptor obsidiansis OB47]
 gi|302574391|gb|ADL42182.1| histidinol phosphate phosphatase HisJ family
          [Caldicellulosiruptor obsidiansis OB47]
          Length = 266

 Score = 42.7 bits (99), Expect = 0.35,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           +HS++S  +  +S+ + + K        IA TD  +L
Sbjct: 5  HIHSNFSS-DSNMSMEDAVKKAIELNLDEIAFTDHMDL 41


>gi|225851436|ref|YP_002731670.1| DNA polymerase beta family [Persephonella marina EX-H1]
 gi|225645277|gb|ACO03463.1| DNA polymerase beta family [Persephonella marina EX-H1]
          Length = 586

 Score = 42.7 bits (99), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAA-DQQPAIAITDT 49
           L VHS++S  +G +S+  I+D +    +   IAITD 
Sbjct: 348 LHVHSTWS--DGVVSIKEIIDFVKKKYRYDYIAITDH 382


>gi|91786905|ref|YP_547857.1| PHP-like protein [Polaromonas sp. JS666]
 gi|91696130|gb|ABE42959.1| PHP-like protein [Polaromonas sp. JS666]
          Length = 286

 Score = 42.7 bits (99), Expect = 0.35,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  S  +G L+   + ++   +     A+TD +
Sbjct: 11 LHCHSVVS--DGTLTPEALAERAKTNGVELWALTDHD 45


>gi|328953344|ref|YP_004370678.1| PHP domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328453668|gb|AEB09497.1| PHP domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 236

 Score = 42.7 bits (99), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
          L VH+  S  + A  L  I+  +      A A+TD N L 
Sbjct: 16 LHVHTLVS-KDAAAPLAAIIRAMKRLGLNAAALTDHNALA 54


>gi|313127204|ref|YP_004037474.1| DNA polymerase iv (family x) [Halogeometricum borinquense DSM
           11551]
 gi|312293569|gb|ADQ68029.1| DNA polymerase IV (family X) [Halogeometricum borinquense DSM
           11551]
          Length = 582

 Score = 42.7 bits (99), Expect = 0.35,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL 56
           L  HS +S  +G  S++ ++           A+TD       +
Sbjct: 352 LHTHSDWS--DGRYSISEMVAAAEERGYDYYAVTDHATGPGMV 392


>gi|220911392|ref|YP_002486701.1| hypothetical protein Achl_0614 [Arthrobacter chlorophenolicus A6]
 gi|219858270|gb|ACL38612.1| PHP domain protein [Arthrobacter chlorophenolicus A6]
          Length = 344

 Score = 42.7 bits (99), Expect = 0.35,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G   +  ++       +  +A+TD 
Sbjct: 103 LHSHSEWS--DGGSPIEVMVAAAEVLGREYLALTDH 136


>gi|76801079|ref|YP_326087.1| family X DNA-dependent DNA polymerase [Natronomonas pharaonis DSM
           2160]
 gi|76556944|emb|CAI48518.1| DNA-directed DNA polymerase (family X) / ycdX protein homolog
           [Natronomonas pharaonis DSM 2160]
          Length = 580

 Score = 42.7 bits (99), Expect = 0.35,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL 56
           L +H++ S  +G  S+  + +  A      IA+ D       +
Sbjct: 353 LHLHTTAS--DGQTSVEGMAEAAAEYGHEYIAVADHATGPGMV 393


>gi|323705030|ref|ZP_08116606.1| PHP domain protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535456|gb|EGB25231.1| PHP domain protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 243

 Score = 42.7 bits (99), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          F     H+ +S   G  ++ + +          IAITD  
Sbjct: 4  FADYHTHTVFS--HGKGTIEDNVKAAIKKGLKEIAITDHG 41


>gi|188589165|ref|YP_001921428.1| PHP domain protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188499446|gb|ACD52582.1| PHP domain protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 231

 Score = 42.7 bits (99), Expect = 0.36,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
           +HS+ S  +G  +   +++         I++TD NN     E   +    G++ I G +
Sbjct: 8  HIHSTSS--DGGYTPKQVVNFAKKRGVDIISLTDHNNTCGIDESILEGERIGVKVIPGVE 65

Query: 75 LDIDMQDNLKM 85
          L    ++  ++
Sbjct: 66 LSTKHKNGSRV 76


>gi|312877399|ref|ZP_07737364.1| histidinol phosphate phosphatase HisJ family
          [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795873|gb|EFR12237.1| histidinol phosphate phosphatase HisJ family
          [Caldicellulosiruptor lactoaceticus 6A]
          Length = 266

 Score = 42.7 bits (99), Expect = 0.36,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           +HS++S  +  +S+ + + K        IA TD  +L
Sbjct: 5  HIHSNFSS-DSNMSMEDAVKKAIELNLDEIAFTDHMDL 41


>gi|304315446|ref|YP_003850593.1| RNA-binding protein [Methanothermobacter marburgensis str. Marburg]
 gi|302588905|gb|ADL59280.1| predicted RNA-binding protein [Methanothermobacter marburgensis
           str. Marburg]
          Length = 193

 Score = 42.7 bits (99), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
           L  + G+G      I++A  +KPF+S ED  +RV       +++   +    LD  G  R
Sbjct: 118 LELLPGIGKKHMWDILKAREEKPFESFEDIKNRVPMLSDPVKLIVRRILM-ELDVEGAKR 176


>gi|301307875|ref|ZP_07213831.1| putative PHP domain protein [Bacteroides sp. 20_3]
 gi|300834218|gb|EFK64832.1| putative PHP domain protein [Bacteroides sp. 20_3]
          Length = 347

 Score = 42.7 bits (99), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G +  +  + +   +   AIAITD 
Sbjct: 50 HTHTVFS--DGLVWPDARIYEAWQEGLDAIAITDH 82


>gi|268324173|emb|CBH37761.1| probable DNA polymerase II small subunit [uncultured archaeon]
          Length = 492

 Score = 42.7 bits (99), Expect = 0.36,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 4/56 (7%)

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            R++                + +  MV S    KT KG+    V   +P+       
Sbjct: 127  RRISCGQIRYLKNRREKEEVSIVGMVSSIN--KTAKGNT--RVDLEDPSGIMSVIL 178


>gi|241767650|ref|ZP_04765292.1| phosphoesterase PHP domain protein [Acidovorax delafieldii 2AN]
 gi|241361422|gb|EER57905.1| phosphoesterase PHP domain protein [Acidovorax delafieldii 2AN]
          Length = 97

 Score = 42.7 bits (99), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 7/50 (14%)

Query: 1  LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          +T YL        L  HS  S  +G L+  ++  +  A+     ++TD +
Sbjct: 1  MTTYLN-----ADLHCHSVVS--DGTLAPEDLAARAKANGVELWSLTDHD 43


>gi|296130317|ref|YP_003637567.1| PHP domain protein [Cellulomonas flavigena DSM 20109]
 gi|296022132|gb|ADG75368.1| PHP domain protein [Cellulomonas flavigena DSM 20109]
          Length = 280

 Score = 42.7 bits (99), Expect = 0.36,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L  HS  S  +G  +   ++          +A+TD +    
Sbjct: 5  LHTHSRAS--DGTQAPAVLVAAARDAGLDVVALTDHDTTAG 43


>gi|255039387|ref|YP_003090008.1| PHP domain-containing protein [Dyadobacter fermentans DSM 18053]
 gi|254952143|gb|ACT96843.1| PHP domain protein [Dyadobacter fermentans DSM 18053]
          Length = 572

 Score = 42.7 bits (99), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS+YS  +G  +L  +  +        + I D 
Sbjct: 330 LHNHSTYS--DGQHTLEQMALRCRDLGFEYLGIADH 363


>gi|328875325|gb|EGG23690.1| hypothetical protein DFA_05824 [Dictyostelium fasciculatum]
          Length = 664

 Score = 42.7 bits (99), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
             HS+YS  +G LS+ N++     +   A+ +TD N +   L   + A     + I
Sbjct: 278 HSHSTYS--DGKLSVENLILWHIKNGFNAMIVTDHNTVSGGLAAEKLAKEKYQEKI 331


>gi|256838784|ref|ZP_05544294.1| phosphotransferase domain-containing protein [Parabacteroides sp.
          D13]
 gi|256739703|gb|EEU53027.1| phosphotransferase domain-containing protein [Parabacteroides sp.
          D13]
          Length = 347

 Score = 42.7 bits (99), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G +  +  + +   +   AIAITD 
Sbjct: 50 HTHTVFS--DGLVWPDARIYEAWQEGLDAIAITDH 82


>gi|50954622|ref|YP_061910.1| hypothetical protein Lxx09150 [Leifsonia xyli subsp. xyli str.
          CTCB07]
 gi|50951104|gb|AAT88805.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
          CTCB07]
          Length = 271

 Score = 42.7 bits (99), Expect = 0.36,   Method: Composition-based stats.
 Identities = 6/33 (18%), Positives = 15/33 (45%)

Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          + +G  +   ++   AA     +A+TD ++   
Sbjct: 1  MSDGTDTPGELVRAAAAAGLGTVALTDHDSTAG 33


>gi|15606601|ref|NP_213981.1| DNA polymerase beta family protein [Aquifex aeolicus VF5]
 gi|2983818|gb|AAC07374.1| DNA polymerase beta family [Aquifex aeolicus VF5]
          Length = 581

 Score = 42.7 bits (99), Expect = 0.36,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +G  +L  +++         I I D 
Sbjct: 346 LHMHTNWS--DGVNTLEEMVETAYKLGYQYIVIGDH 379


>gi|319764019|ref|YP_004127956.1| php domain protein [Alicycliphilus denitrificans BC]
 gi|317118580|gb|ADV01069.1| PHP domain protein [Alicycliphilus denitrificans BC]
          Length = 293

 Score = 42.7 bits (99), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  S  +G L+   +  +  A+     A+TD +
Sbjct: 9  LHCHSVVS--DGTLTPEQLAARAHANGVQLWALTDHD 43


>gi|295676915|ref|YP_003605439.1| PHP domain protein [Burkholderia sp. CCGE1002]
 gi|295436758|gb|ADG15928.1| PHP domain protein [Burkholderia sp. CCGE1002]
          Length = 276

 Score = 42.7 bits (99), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  +  ++  +  A+     A+TD + +    E    A A G+  + G 
Sbjct: 5   LHCHSTVS--DGQFAPTDVARRAHANGVTLWALTDHDEVGGQHEARAAAEALGMNYLSGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           ++ +                 +   I  L  T +G
Sbjct: 63  EISVTWAGRTVHIVGLGIDPTSQILIDGLARTRDG 97


>gi|157363267|ref|YP_001470034.1| phosphotransferase domain-containing protein [Thermotoga lettingae
           TMO]
 gi|157313871|gb|ABV32970.1| PHP domain protein [Thermotoga lettingae TMO]
          Length = 459

 Score = 42.7 bits (99), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +H+ YS  +G   +  +     A       +TD N +   +E    A   G+ PI
Sbjct: 115 HLHTIYS--DGKQDVETVAKACVACGLSWAILTDHNTIKGGIE-WTAASKYGLLPI 167


>gi|20095094|ref|NP_614941.1| RNA-binding protein [Methanopyrus kandleri AV19]
 gi|19888382|gb|AAM02871.1| Predicted RNA-binding protein [Methanopyrus kandleri AV19]
          Length = 204

 Score = 42.7 bits (99), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK---GVGTTTARHIME 855
            +++    ++     ++ +        V F      I   L  ++   G+G  T   I+E
Sbjct: 87  YDELTATAREELPHAVEKIIEDNEEDFVRFFNEARPITPRLHQLELLPGIGRKTLERILE 146

Query: 856 ASADKPFDSLEDFCSRVDSKKLNRRVL 882
               +PF+SL+D   RV   +++ R +
Sbjct: 147 EREKEPFESLDDIKERVKGLRMHPRDM 173


>gi|307152976|ref|YP_003888360.1| PHP domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306983204|gb|ADN15085.1| PHP domain protein [Cyanothece sp. PCC 7822]
          Length = 230

 Score = 42.7 bits (99), Expect = 0.37,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           +H++ S  +G LS   +++++       +AITD ++   
Sbjct: 36 HMHTTCS--DGQLSPIALIEQVLKIGLKGLAITDHHSTQG 73


>gi|325968730|ref|YP_004244922.1| nucleotide binding protein [Vulcanisaeta moutnovskia 768-28]
 gi|323707933|gb|ADY01420.1| putative nucleotide binding protein [Vulcanisaeta moutnovskia
           768-28]
          Length = 190

 Score = 42.7 bits (99), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 800 EKIKKFCQ---------DARQFNIQIMPPSVNTPCVDFKVGDNR------IYYSLAAIKG 844
           +K+ K  +         +A+    +I+   V      F    N+        +SL  +KG
Sbjct: 76  DKVNKIVRRINYDELTSEAKNALPEIVAKIVKAQESRFVDFFNKAGPITLKMHSLELLKG 135

Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRV 872
           +G  T   I+E    KPF S ED  SR+
Sbjct: 136 IGKKTLWQILEERRKKPFQSFEDIKSRI 163


>gi|312891565|ref|ZP_07751078.1| PHP domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311295932|gb|EFQ73088.1| PHP domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 413

 Score = 42.7 bits (99), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            L VHS +S+     S+  I+    A     + ITD +N
Sbjct: 68  ELHVHSRHSIESSNNSVAKIIAFCKAVGVDYVCITDHDN 106


>gi|160903075|ref|YP_001568656.1| phosphotransferase domain-containing protein [Petrotoga mobilis
           SJ95]
 gi|160360719|gb|ABX32333.1| PHP domain protein [Petrotoga mobilis SJ95]
          Length = 275

 Score = 42.7 bits (99), Expect = 0.37,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 65/174 (37%), Gaps = 7/174 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    HS+ S  +G+ + N +L+         ++ITD + L              ++ + 
Sbjct: 3   VDFHTHSTGS--DGSNTPNELLNLALEKNIEYLSITDHDTLDGVKSLENFKDLKKLKFVP 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++  +    L +   G        + VL     E  Q   +  + + + +  K   +I
Sbjct: 61  GVEISAEFPTTLHLLGYGFDSNNERLNKVL-----EELQEFRKKRNVLMIENMQKLGFQI 115

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            L  L++     LI     +S  + + +  N  +  +K L     L+ D+  +N
Sbjct: 116 TLEELKKEAGGELIGRPHFASLMVKKNYVSNKQEAFDKYLKKGAPLYLDKKRLN 169


>gi|19074286|ref|NP_585792.1| REPLICATION FACTOR A PROTEIN 2 (32KDA SUBUNIT) [Encephalitozoon
            cuniculi GB-M1]
 gi|19068928|emb|CAD25396.1| REPLICATION FACTOR A PROTEIN 2 (32KDA SUBUNIT) [Encephalitozoon
            cuniculi GB-M1]
          Length = 274

 Score = 42.7 bits (99), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 18/84 (21%)

Query: 956  QRVLGFYFSGHPLDVYKPI-LRKMGIKGYEE-----SVATIRGNNIRLAAMVVSKQQKKT 1009
            + +LG       +   + + ++++G   ++E      V +    N+++   VVS +   +
Sbjct: 63   RELLG-------VKTLRALTIKQIGSCDFDETSSTHLVDSAEVTNVQIIGWVVSSKT--S 113

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
              GS        +     +  F+P
Sbjct: 114  ATGSMFV---LEDGTGSVDCTFWP 134


>gi|91784804|ref|YP_560010.1| hypothetical protein Bxe_A0989 [Burkholderia xenovorans LB400]
 gi|91688758|gb|ABE31958.1| Putative exported protein [Burkholderia xenovorans LB400]
          Length = 121

 Score = 42.7 bits (99), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 11/68 (16%)

Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
           F        VNT   D          +L  IKG+G   A+ I++   A  PF    D   
Sbjct: 15  FGHAYAAVDVNTANED----------ALRGIKGIGPAKAKAILDERAAHGPFKDPADLGK 64

Query: 871 RVDSKKLN 878
           RV     +
Sbjct: 65  RVKGMGGH 72


>gi|257451454|ref|ZP_05616753.1| HisJ family histidinol phosphate phosphatase [Fusobacterium sp.
          3_1_5R]
 gi|317058034|ref|ZP_07922519.1| histidinol phosphate phosphatase HisJ family [Fusobacterium sp.
          3_1_5R]
 gi|313683710|gb|EFS20545.1| histidinol phosphate phosphatase HisJ family [Fusobacterium sp.
          3_1_5R]
          Length = 267

 Score = 42.7 bits (99), Expect = 0.38,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
           +HS +S  +   ++  +++   +     IAITD  + +  
Sbjct: 7  HIHSEFS-GDSNQNIEELIEHCISIGLKEIAITDH-SEYGI 45


>gi|20093609|ref|NP_613456.1| phosphatase [Methanopyrus kandleri AV19]
 gi|19886471|gb|AAM01386.1| Predicted phosphatase of the PHP family [Methanopyrus kandleri
          AV19]
          Length = 236

 Score = 42.7 bits (99), Expect = 0.38,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  H+ YS  +G  +    +          +A+TD  
Sbjct: 7  LHTHTVYS--DGHGTPLENVLAAEERGLETVALTDHG 41


>gi|325527402|gb|EGD04750.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Burkholderia sp. TJI49]
          Length = 109

 Score = 42.7 bits (99), Expect = 0.38,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882
                   +     +L  IKG+G   A+ I++   A  PF + +D  +RV  K +  + +
Sbjct: 17  SAWAAVDVNTASEDALVGIKGIGPARAKAILDERGARGPFKNADDLAARV--KGMGGQTV 74

Query: 883 ESLVFAGA 890
           E L   G 
Sbjct: 75  ERLQKEGL 82


>gi|257466919|ref|ZP_05631230.1| HisJ family histidinol phosphate phosphatase [Fusobacterium
          gonidiaformans ATCC 25563]
 gi|315918065|ref|ZP_07914305.1| histidinol phosphate phosphatase HisJ family [Fusobacterium
          gonidiaformans ATCC 25563]
 gi|313691940|gb|EFS28775.1| histidinol phosphate phosphatase HisJ family [Fusobacterium
          gonidiaformans ATCC 25563]
          Length = 267

 Score = 42.7 bits (99), Expect = 0.38,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
           +HS +S  +   ++  +++   +     IAITD  + +  
Sbjct: 7  HIHSEFS-GDSNQNIEELIEHCISIGLKEIAITDH-SEYGI 45


>gi|160938539|ref|ZP_02085893.1| hypothetical protein CLOBOL_03436 [Clostridium bolteae ATCC
          BAA-613]
 gi|158438526|gb|EDP16284.1| hypothetical protein CLOBOL_03436 [Clostridium bolteae ATCC
          BAA-613]
          Length = 294

 Score = 42.7 bits (99), Expect = 0.38,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 9/68 (13%)

Query: 17 HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----SQKACAAGIQPIIG 72
          HS YS  +G  S   ++ + A      ++I D N+    +       Q A  AGI+ + G
Sbjct: 2  HSYYSD-DGEFSPEELVRQCAMSGIRVMSIADHNS----VRANDGGRQAARRAGIRYVSG 56

Query: 73 CQLDIDMQ 80
           ++D   +
Sbjct: 57 IEIDCTFR 64


>gi|153835308|ref|ZP_01987975.1| PHP domain containing protein [Vibrio harveyi HY01]
 gi|148868173|gb|EDL67326.1| PHP domain containing protein [Vibrio harveyi HY01]
          Length = 292

 Score = 42.7 bits (99), Expect = 0.38,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H++ S  +G  + ++++D+  +     +AITD + +       Q      + 
Sbjct: 5  LHSHTTAS--DGRFAPHDLVDRALSFDIEVLAITDHDTVDGLAPAKQYVEENNLP 57


>gi|153954165|ref|YP_001394930.1| hydrolase [Clostridium kluyveri DSM 555]
 gi|146347046|gb|EDK33582.1| Predicted hydrolase [Clostridium kluyveri DSM 555]
          Length = 282

 Score = 42.7 bits (99), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +H++ S  +G LS   I+          IAITD + +        +     I+ I 
Sbjct: 8  HLHTTAS--DGKLSPAEIVTNSKKAGLDIIAITDHDTISGIDSALYQGEKVNIKVIP 62


>gi|302380207|ref|ZP_07268679.1| PHP domain protein [Finegoldia magna ACS-171-V-Col3]
 gi|302311990|gb|EFK93999.1| PHP domain protein [Finegoldia magna ACS-171-V-Col3]
          Length = 249

 Score = 42.7 bits (99), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 15 QVHSSYS-LLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALE 57
           VHS YS    G  ++  I+ +  A +   I+ITD      ++    
Sbjct: 12 HVHSVYSRNNHGKSTIEEIVQEARAKKLKTISITDHGPGHMMYGIKR 58


>gi|219854774|ref|YP_002471896.1| hypothetical protein CKR_1431 [Clostridium kluyveri NBRC 12016]
 gi|219568498|dbj|BAH06482.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 285

 Score = 42.7 bits (99), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +H++ S  +G LS   I+          IAITD + +        +     I+ I 
Sbjct: 11 HLHTTAS--DGKLSPAEIVTNSKKAGLDIIAITDHDTISGIDSALYQGEKVNIKVIP 65


>gi|302555975|ref|ZP_07308317.1| PHP domain-containing protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302473593|gb|EFL36686.1| PHP domain-containing protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 347

 Score = 42.7 bits (99), Expect = 0.39,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +HS +S  +G   +  +    A       A+TD 
Sbjct: 106 HLHSDWS--DGGSPIEEMGRAAAELGHEWAALTDH 138


>gi|251778017|ref|ZP_04820937.1| PHP domain protein [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
 gi|243082332|gb|EES48222.1| PHP domain protein [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
          Length = 231

 Score = 42.7 bits (99), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
           +HS+ S  +G  +   +++         I++TD NN     E   +    G++ I G +
Sbjct: 8  HIHSTSS--DGGYTPKQVVNFAKKRGVDIISLTDHNNTCGIDESILEGERIGVKVIPGVE 65

Query: 75 LDIDMQDNLKM 85
          L    ++  ++
Sbjct: 66 LSTKHKNGSRV 76


>gi|298481951|ref|ZP_07000140.1| PHP domain-containing protein [Bacteroides sp. D22]
 gi|295087301|emb|CBK68824.1| Histidinol phosphatase and related hydrolases of the PHP family
          [Bacteroides xylanisolvens XB1A]
 gi|298271815|gb|EFI13387.1| PHP domain-containing protein [Bacteroides sp. D22]
          Length = 385

 Score = 42.3 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L +H+ +S  +G LS +  + +   D   AI++TD 
Sbjct: 63 LHLHTYFS--DGHLSPSARVREAWLDGLDAISVTDH 96


>gi|169824782|ref|YP_001692393.1| histidinol phosphatase/ hydrolase [Finegoldia magna ATCC 29328]
 gi|167831587|dbj|BAG08503.1| putative histidinol phosphatase and related hydrolases of the PHP
          family [Finegoldia magna ATCC 29328]
          Length = 249

 Score = 42.3 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 15 QVHSSYS-LLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALE 57
           VHS YS    G  ++  I+ +  A +   I+ITD      ++    
Sbjct: 12 HVHSVYSRNNHGKSTIEEIVQEARAKKLKTISITDHGPGHMMYGIKR 58


>gi|53728837|ref|ZP_00134880.2| COG0159: Tryptophan synthase alpha chain [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207954|ref|YP_001053179.1| tryptophan synthase subunit alpha [Actinobacillus pleuropneumoniae
           L20]
 gi|166235093|sp|A3MZI8|TRPA_ACTP2 RecName: Full=Tryptophan synthase alpha chain
 gi|126096746|gb|ABN73574.1| tryptophan synthase alpha chain [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 269

 Score = 42.3 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 39/125 (31%), Gaps = 10/125 (8%)

Query: 33  LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
             + A     A+ I D   L  A EF+Q A   GIQ +  C  + D     ++    +  
Sbjct: 115 FKRCAETGVDAVLIADVPVLA-AEEFTQAAKKHGIQSVFICPPNADQATIERIARLTEGY 173

Query: 93  FPTVPSI-VLLVSTAEGYQRLIELV-------SRMYLLDQGKQSVRICLSWLQEIGTEGL 144
              V    V         + L  L+       S   L   G          L  +G +G 
Sbjct: 174 TYLVSRAGVTSAENQAHAKNLDNLIESLKRSNSAPILQGFGIAKPEQVKEALV-LGCDGA 232

Query: 145 IMLTG 149
           I  + 
Sbjct: 233 ISGSA 237


>gi|295320994|gb|ADG01371.1| truncated DNA polymerase III DnaE [Clostridium botulinum F str.
            230613]
          Length = 155

 Score = 42.3 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 5/34 (14%), Positives = 15/34 (44%)

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +++    K TR  + + ++   + ++      FP
Sbjct: 2    VILEVLIKVTRNNTIMAFLKLEDLSESILVIVFP 35


>gi|146304464|ref|YP_001191780.1| phosphotransferase domain-containing protein [Metallosphaera
          sedula DSM 5348]
 gi|145702714|gb|ABP95856.1| PHP C-terminal domain protein [Metallosphaera sedula DSM 5348]
          Length = 220

 Score = 42.3 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          V   VHS +S  +G      ++          IA+TD + 
Sbjct: 3  VDFHVHSFFS--DGKHEPETLVKYAKKLNLV-IALTDHDT 39


>gi|222529696|ref|YP_002573578.1| histidinol phosphate phosphatase HisJ family protein
          [Caldicellulosiruptor bescii DSM 6725]
 gi|222456543|gb|ACM60805.1| histidinol phosphate phosphatase HisJ family
          [Caldicellulosiruptor bescii DSM 6725]
          Length = 266

 Score = 42.3 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           +HS++S  +  +S+ + + K        IA TD  +L
Sbjct: 5  HIHSNFSS-DSNMSMEDAVKKAIELNLEEIAFTDHMDL 41


>gi|156975030|ref|YP_001445937.1| hypothetical protein VIBHAR_02756 [Vibrio harveyi ATCC BAA-1116]
 gi|156526624|gb|ABU71710.1| hypothetical protein VIBHAR_02756 [Vibrio harveyi ATCC BAA-1116]
          Length = 292

 Score = 42.3 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H++ S  +G  + ++++D+  +     +AITD + +       Q      + 
Sbjct: 5  LHSHTTAS--DGRFAPHDLVDRALSFDIEVLAITDHDTVDGLAPAKQYVEENNLP 57


>gi|15679325|ref|NP_276442.1| hypothetical protein MTH1325 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622431|gb|AAB85803.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 193

 Score = 42.3 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
           L  + G+G      I++A  +KPF+S ED  +RV       +++   V    LD  G  R
Sbjct: 118 LELLPGIGKKHMWDILKAREEKPFESFEDIKNRVPMLSDPVKLIVRRVLM-ELDVEGAKR 176


>gi|317493784|ref|ZP_07952201.1| PHP domain-containing protein [Enterobacteriaceae bacterium
          9_2_54FAA]
 gi|316918111|gb|EFV39453.1| PHP domain-containing protein [Enterobacteriaceae bacterium
          9_2_54FAA]
          Length = 299

 Score = 42.3 bits (98), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE 57
          L +HS YS  +    +  ++ +   +    +A+TD N+ FS  E
Sbjct: 6  LHMHSHYSD-DADYPVAELIARCLREGVTTLAVTDHNSAFSFAE 48


>gi|254393165|ref|ZP_05008321.1| hypothetical protein SSCG_05663 [Streptomyces clavuligerus ATCC
           27064]
 gi|197706808|gb|EDY52620.1| hypothetical protein SSCG_05663 [Streptomyces clavuligerus ATCC
           27064]
          Length = 39

 Score = 42.3 bits (98), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
                P+ Q + + +E  GL+K D LG+
Sbjct: 6   TPGGYPMVQADKRDVEDLGLVKIDVLGV 33


>gi|303234969|ref|ZP_07321593.1| PHP domain protein [Finegoldia magna BVS033A4]
 gi|302493824|gb|EFL53606.1| PHP domain protein [Finegoldia magna BVS033A4]
          Length = 249

 Score = 42.3 bits (98), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 15 QVHSSYS-LLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALE 57
           VHS YS    G  ++  I+ +  A +   I+ITD      ++    
Sbjct: 12 HVHSVYSRNNHGKSTIEEIVQEARAKKLKTISITDHGPGHMMYGIKR 58


>gi|193222378|emb|CAL62495.2| Putative DNA polymerase X [Herminiimonas arsenicoxydans]
          Length = 576

 Score = 42.3 bits (98), Expect = 0.41,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
           L  H+  S  +G  SL  +  +        +AITD ++
Sbjct: 342 LHAHTKAS--DGQHSLREMAMEAKNRGLSYLAITDHSS 377


>gi|116872602|ref|YP_849383.1| hypothetical protein lwe1186 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741480|emb|CAK20604.1| DNA polymerase X family protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 570

 Score = 42.3 bits (98), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|189423674|ref|YP_001950851.1| glycosyl transferase group 1 [Geobacter lovleyi SZ]
 gi|189419933|gb|ACD94331.1| glycosyl transferase group 1 [Geobacter lovleyi SZ]
          Length = 819

 Score = 42.3 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 12/56 (21%)

Query: 14 LQVHSSYS-------LL-----EGALSLNNILDKIAADQQPAIAITDTNNLFSALE 57
          L VHSSYS       +      E   S   +     A     + ITD N +  ALE
Sbjct: 10 LHVHSSYSNKPTYWAMRKFNCPESYTSPRQLYQTALARGMHYVTITDHNAIGGALE 65


>gi|41615122|ref|NP_963620.1| hypothetical protein NEQ334 [Nanoarchaeum equitans Kin4-M]
 gi|40068846|gb|AAR39181.1| NEQ334 [Nanoarchaeum equitans Kin4-M]
          Length = 172

 Score = 42.3 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 4/112 (3%)

Query: 780 KTHY-PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
           K +  P +       ++    +++  F ++  +  I+ +        V+F      I   
Sbjct: 44  KVYVGPGKRDKIQYIIKRLKYDELTDFAKEQLEKAIEQIVKEREKEFVEFFNMAGPITLR 103

Query: 839 LAAIK---GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           L +++   G+G  T   I+     + F S ED   R+   K   +++   + 
Sbjct: 104 LHSLELFEGIGKKTVNEIISEREREKFKSFEDIEKRIPKLKNIVKIIAKRIL 155


>gi|307327194|ref|ZP_07606382.1| PHP domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306887085|gb|EFN18083.1| PHP domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 581

 Score = 42.3 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H++  L +G   L +++ K         AITD 
Sbjct: 342 LHTHTN--LTDGLEPLEDMITKAERRGYAYYAITDH 375


>gi|134095542|ref|YP_001100617.1| putative DNA polymerase [Herminiimonas arsenicoxydans]
          Length = 528

 Score = 42.3 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
           L  H+  S  +G  SL  +  +        +AITD ++
Sbjct: 294 LHAHTKAS--DGQHSLREMAMEAKNRGLSYLAITDHSS 329


>gi|327482456|gb|AEA85766.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 350

 Score = 42.3 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
           L  I G+  + A  I+    +KP+  L D   R+
Sbjct: 236 LQTIAGIDDSLAEAIVRERQNKPYTDLADANQRI 269


>gi|149190889|ref|ZP_01869152.1| putative metal-dependent phosphoesterase YciV [Vibrio shilonii
          AK1]
 gi|148835244|gb|EDL52218.1| putative metal-dependent phosphoesterase YciV [Vibrio shilonii
          AK1]
          Length = 297

 Score = 42.3 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          L  H++ S  +G LS+  +LD+        +AITD + L +  E  +
Sbjct: 5  LHSHTTAS--DGRLSVAELLDRAIGFDVKVLAITDHDTLDAIPEALE 49


>gi|167040993|ref|YP_001663978.1| phosphoesterase domain-containing protein [Thermoanaerobacter sp.
           X514]
 gi|300913796|ref|ZP_07131113.1| PHP domain protein [Thermoanaerobacter sp. X561]
 gi|307725517|ref|YP_003905268.1| PHP domain-containing protein [Thermoanaerobacter sp. X513]
 gi|166855233|gb|ABY93642.1| phosphoesterase PHP domain protein [Thermoanaerobacter sp. X514]
 gi|300890481|gb|EFK85626.1| PHP domain protein [Thermoanaerobacter sp. X561]
 gi|307582578|gb|ADN55977.1| PHP domain protein [Thermoanaerobacter sp. X513]
          Length = 524

 Score = 42.3 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
             L VHS++S  +G  +   I++         + ITD  +L
Sbjct: 194 AQLHVHSNFS--DGKKTPQEIVNIYKGMGYKVVYITDHTDL 232


>gi|187924530|ref|YP_001896172.1| PHP domain protein [Burkholderia phytofirmans PsJN]
 gi|187715724|gb|ACD16948.1| PHP domain protein [Burkholderia phytofirmans PsJN]
          Length = 276

 Score = 42.3 bits (98), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 2/95 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  +  ++  +  A      A+TD + L   LE    A + G+  + G 
Sbjct: 5   LHCHSTVS--DGQFAPADVARRAHAGGVTLWALTDHDELGGQLEARSTAESLGMDYLSGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           ++ +                 +   I  L  T  G
Sbjct: 63  EISVTWASRTVHIVGLGIDPTSSILIDGLARTRNG 97


>gi|241764524|ref|ZP_04762544.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
 gi|241366060|gb|EER60664.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
          Length = 154

 Score = 42.3 bits (98), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
           L  IKG+G   +  I+E   +  F    DF +RV    
Sbjct: 31  LDGIKGIGPGISGKIVEERKNGSFKDWNDFITRVRGVG 68


>gi|239944097|ref|ZP_04696034.1| hypothetical protein SrosN15_24061 [Streptomyces roseosporus NRRL
          15998]
 gi|239990550|ref|ZP_04711214.1| hypothetical protein SrosN1_24798 [Streptomyces roseosporus NRRL
          11379]
 gi|291447565|ref|ZP_06586955.1| PHP C-terminal domain-containing protein [Streptomyces
          roseosporus NRRL 15998]
 gi|291350512|gb|EFE77416.1| PHP C-terminal domain-containing protein [Streptomyces
          roseosporus NRRL 15998]
          Length = 288

 Score = 42.3 bits (98), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          L  HS+ S  +G  +   ++   AA     +A+TD + +         
Sbjct: 5  LHTHSTAS--DGTDTPAELVANAAAAGLDVVALTDHDTVGGHQRAIDA 50


>gi|222054249|ref|YP_002536611.1| PHP domain protein [Geobacter sp. FRC-32]
 gi|221563538|gb|ACM19510.1| PHP domain protein [Geobacter sp. FRC-32]
          Length = 579

 Score = 42.3 bits (98), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS +S  +G  SL+ +           IA+TD 
Sbjct: 341 LHVHSRWS--DGMHSLDKMAAAARKRGLAYIALTDH 374


>gi|188584737|ref|YP_001916282.1| PHP domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349424|gb|ACB83694.1| PHP domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 251

 Score = 42.3 bits (98), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 5  LEKSPSF-VHLQVHSSYSL---LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          + K   F   L +HS  S    L+  +  NNI+D    +    IAITD N   +   F +
Sbjct: 1  MSKGKWFKADLHIHSVLSPCADLD--MGPNNIIDICKRENIEIIAITDHNTGRNVPAFQK 58

Query: 61 KACAAGIQPIIGC 73
          KA   GI  I G 
Sbjct: 59 KAAREGITVIPGM 71


>gi|108803083|ref|YP_643020.1| PHP-like protein [Rubrobacter xylanophilus DSM 9941]
 gi|108764326|gb|ABG03208.1| PHP-like protein [Rubrobacter xylanophilus DSM 9941]
          Length = 569

 Score = 42.3 bits (98), Expect = 0.44,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH+SYS  +G  ++ ++ +   A     +   D 
Sbjct: 337 LHVHTSYS--DGKGTIESMAEAAIALGYEYLVFCDH 370


>gi|126667147|ref|ZP_01738121.1| hypothetical protein MELB17_07319 [Marinobacter sp. ELB17]
 gi|126628303|gb|EAZ98926.1| hypothetical protein MELB17_07319 [Marinobacter sp. ELB17]
          Length = 97

 Score = 42.3 bits (98), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 838 SLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           SLA++ G+G + A  I+E   A+ PF S +D     + K +  R +E   
Sbjct: 37  SLASLSGIGQSKAEAIVEYREANGPFTSTQDLA---NVKGIGARTVEKNA 83


>gi|29345441|ref|NP_808944.1| hypothetical protein BT_0031 [Bacteroides thetaiotaomicron
          VPI-5482]
 gi|29337333|gb|AAO75138.1| Polymerase and histidinol phosphatase [Bacteroides
          thetaiotaomicron VPI-5482]
          Length = 354

 Score = 42.3 bits (98), Expect = 0.45,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L +H+ +S  +G LS +  + +   D   AI++TD 
Sbjct: 32 LHLHTYFS--DGHLSPSARVREAWLDGLDAISVTDH 65


>gi|163846634|ref|YP_001634678.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Chloroflexus aurantiacus J-10-fl]
 gi|222524431|ref|YP_002568902.1| helix-turn-helix domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163667923|gb|ABY34289.1| helix-hairpin-helix motif [Chloroflexus aurantiacus J-10-fl]
 gi|222448310|gb|ACM52576.1| helix-hairpin-helix motif protein [Chloroflexus sp. Y-400-fl]
          Length = 245

 Score = 42.3 bits (98), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 11/63 (17%)

Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSL 865
           ++      ++ P  +N               +L A+ G+G   A  I+    A  PF S+
Sbjct: 169 EEVSAEGTELAPVDINR----------ADRETLIALPGIGPVLADRIIAYREAHGPFKSV 218

Query: 866 EDF 868
           +D 
Sbjct: 219 DDL 221


>gi|292654268|ref|YP_003534165.1| PHP domain-containing protein [Haloferax volcanii DS2]
 gi|291370280|gb|ADE02507.1| PHP domain protein [Haloferax volcanii DS2]
          Length = 264

 Score = 42.3 bits (98), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          +++SP    L +H++ S  +G L+++ + D   A     +A+TD +
Sbjct: 1  MDESPPVADLHLHTTAS--DGRLTIDALPDAARAGGVDVVAVTDHD 44


>gi|313633657|gb|EFS00414.1| PHP domain protein [Listeria seeligeri FSL N1-067]
          Length = 570

 Score = 42.3 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 75/222 (33%), Gaps = 18/222 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI--I 71
           L +H+++S  +GA ++  +++   A     + ITD        +F + A     + +   
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG------KFLRVANGLDEKRLLEQ 390

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
             ++     +  ++          +P   L        Q    + S      Q ++ +  
Sbjct: 391 QAEIKKVAANYPEIDVYSGVEMDILPDGSLDFEDETLEQLDFVIASIHSSFGQSEKEIMK 450

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
            L    E     LI    G      + +  N      K L+   K  G  L +N    R 
Sbjct: 451 RLKAACENPHIRLIAHPTGRIIVKRKPYHVNM-----KELIELAKNTGTALELNANPQR- 504

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            D  RE   ++LA    +P+    ++      D+ +  V  A
Sbjct: 505 LDLNREH--LELAQIAGVPVAINTDAHDTKHLDFMSLGVRAA 544


>gi|307594672|ref|YP_003900989.1| hypothetical protein Vdis_0540 [Vulcanisaeta distributa DSM 14429]
 gi|307549873|gb|ADN49938.1| Protein of unknown function DUF655 [Vulcanisaeta distributa DSM
           14429]
          Length = 187

 Score = 42.3 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 15/88 (17%)

Query: 800 EKIKKFC---------QDARQFNIQIMPPSVNTPCVDFKVGDNR------IYYSLAAIKG 844
           +K+ K            +A+    +++   V      F    N+        +SL  ++G
Sbjct: 73  DKVNKIVRRISYDELTNEAKNALPEVVAKIVKAQENRFVDFFNKAGPITLKMHSLELLRG 132

Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRV 872
           +G  T   I+E    KPF S ED  SRV
Sbjct: 133 IGKKTLWQILEERRKKPFQSFEDIKSRV 160


>gi|262165446|ref|ZP_06033183.1| PHP family hydrolase [Vibrio mimicus VM223]
 gi|262025162|gb|EEY43830.1| PHP family hydrolase [Vibrio mimicus VM223]
          Length = 290

 Score = 42.3 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++++  +     +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIERAVSFNIDVLAITDHDTVAALSDARAYITEQQHPLQLVN 62


>gi|239636361|ref|ZP_04677363.1| DNA-dependent DNA polymerase beta chain [Staphylococcus warneri
           L37603]
 gi|239597716|gb|EEQ80211.1| DNA-dependent DNA polymerase beta chain [Staphylococcus warneri
           L37603]
          Length = 570

 Score = 42.3 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++YS  +GA S+ ++ +   A     + ITD 
Sbjct: 336 LHMHTTYS--DGAFSIRDMAEANIAKGYEFMVITDH 369


>gi|238027047|ref|YP_002911278.1| putative comE protein [Burkholderia glumae BGR1]
 gi|237876241|gb|ACR28574.1| Putative comE protein [Burkholderia glumae BGR1]
          Length = 213

 Score = 42.3 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++    + PF S +D  +RV      
Sbjct: 33  ALESVKGLGPVKSKAIIDERTKNGPFKSADDLANRVKGLGQK 74


>gi|152982284|ref|YP_001354354.1| hypothetical protein mma_2664 [Janthinobacterium sp. Marseille]
 gi|151282361|gb|ABR90771.1| Hypothetical protein mma_2664 [Janthinobacterium sp. Marseille]
          Length = 113

 Score = 42.3 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 14/91 (15%)

Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCS 870
            N+      VN               +L  IKGVG   ++ I++       F   +D   
Sbjct: 16  MNLAWAEVDVN----------KADQAALDGIKGVGPAMSKAILDERKKGGNFKDWDDLQK 65

Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           RV  K +  +  E L  AG L   G +R   
Sbjct: 66  RV--KGVGEKNSEKLSEAG-LTVNGVTRSGA 93


>gi|147679065|ref|YP_001213280.1| PHP family histidinol phosphatase/hydrolase [Pelotomaculum
          thermopropionicum SI]
 gi|146275162|dbj|BAF60911.1| histidinol phosphatase and related hydrolases of the PHP family
          [Pelotomaculum thermopropionicum SI]
          Length = 244

 Score = 42.3 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          F     H+++S  +G  +  + +   A     A+AITD  
Sbjct: 4  FADYHTHTTHS--DGRGTPADNIRAAAGRGLKALAITDHG 41


>gi|89069391|ref|ZP_01156746.1| putative secreted protein [Oceanicola granulosus HTCC2516]
 gi|89045021|gb|EAR51099.1| putative secreted protein [Oceanicola granulosus HTCC2516]
          Length = 458

 Score = 42.3 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
             H+ +S  + A S   +           +A+TD N +
Sbjct: 140 HCHTFHS--DAAGSPETLHAAARQAGLDFLAVTDHNTV 175


>gi|328475249|gb|EGF46030.1| hypothetical protein LM220_17512 [Listeria monocytogenes 220]
          Length = 552

 Score = 42.3 bits (98), Expect = 0.47,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 321 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 355


>gi|289434480|ref|YP_003464352.1| DNA polymerase family protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170724|emb|CBH27264.1| DNA polymerase family protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 570

 Score = 42.3 bits (98), Expect = 0.47,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|268323588|emb|CBH37176.1| conserved hypothetical protein, containing PHP domain [uncultured
           archaeon]
          Length = 577

 Score = 42.3 bits (98), Expect = 0.47,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH+++S  +G  ++  +     +     IA+ D 
Sbjct: 341 LHVHTNWS--DGKNTIEEMALTAISSGYEYIAVADH 374


>gi|163784375|ref|ZP_02179270.1| hypothetical protein HG1285_08141 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880358|gb|EDP73967.1| hypothetical protein HG1285_08141 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 135

 Score = 42.3 bits (98), Expect = 0.47,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
           +H+ +S  +     ++I   +  +    + ITD NN
Sbjct: 51 HIHTQFSF-DSLGKPSDIKKAMEENDIDFVFITDHNN 86


>gi|315302786|ref|ZP_07873553.1| PHP domain protein [Listeria ivanovii FSL F6-596]
 gi|313628843|gb|EFR97209.1| PHP domain protein [Listeria ivanovii FSL F6-596]
          Length = 570

 Score = 42.3 bits (98), Expect = 0.47,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|291521263|emb|CBK79556.1| histidinol phosphate phosphatase HisJ family [Coprococcus catus
          GD/7]
          Length = 280

 Score = 42.3 bits (98), Expect = 0.47,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
           +HS YS  +G+  L+ I           IAITD  +++
Sbjct: 7  HMHSKYSF-DGSEELDTICQTAIRRGLSEIAITDHMDIY 44


>gi|313638203|gb|EFS03451.1| PHP domain protein [Listeria seeligeri FSL S4-171]
          Length = 570

 Score = 42.3 bits (98), Expect = 0.48,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 75/222 (33%), Gaps = 18/222 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI--I 71
           L +H+++S  +GA ++  +++   A     + ITD        +F + A     + +   
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG------KFLRVANGLDEKRLLEQ 390

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
             ++     +  ++          +P   L        Q    + S      Q ++ +  
Sbjct: 391 QAEIKKVAANYPEIDVYSGVEMDILPDGSLDFEDETLEQLDFVIASIHSSFGQSEKEIMK 450

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
            L    E     LI    G      + +  N      K L+   K  G  L +N    R 
Sbjct: 451 RLKAACENPHIRLIAHPTGRIIVKRKPYHVNM-----KELIELAKNTGTALELNANPQR- 504

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            D  RE   ++LA    +P+    ++      D+ +  V  A
Sbjct: 505 LDLNREH--LELAQIAGVPVAINTDAHDTKHLDFMSLGVRAA 544


>gi|222110587|ref|YP_002552851.1| hypothetical protein Dtpsy_1387 [Acidovorax ebreus TPSY]
 gi|221730031|gb|ACM32851.1| conserved hypothetical protein [Acidovorax ebreus TPSY]
          Length = 114

 Score = 42.3 bits (98), Expect = 0.48,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
           L  ++G+G   +  I+   A  PF    D  +RV     +
Sbjct: 34  LDGVRGIGPAMSSRILAERARGPFQDWSDLIARVKGIGPS 73


>gi|16803271|ref|NP_464756.1| hypothetical protein lmo1231 [Listeria monocytogenes EGD-e]
 gi|16410647|emb|CAC99309.1| lmo1231 [Listeria monocytogenes EGD-e]
          Length = 570

 Score = 42.3 bits (98), Expect = 0.48,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|88800815|ref|ZP_01116371.1| hypothetical protein MED297_06529 [Reinekea sp. MED297]
 gi|88776455|gb|EAR07674.1| hypothetical protein MED297_06529 [Reinekea sp. MED297]
          Length = 2587

 Score = 42.3 bits (98), Expect = 0.48,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 838 SLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLES 884
           SL ++KG+G  TA  I+EA      F+S+E+    V   K   R +E+
Sbjct: 14  SLQSVKGIGEKTAERIIEARNAGVEFNSMEELKGVVSYNKAFERDIEN 61


>gi|297588762|ref|ZP_06947405.1| histidinol phosphatase/ hydrolase [Finegoldia magna ATCC 53516]
 gi|297574135|gb|EFH92856.1| histidinol phosphatase/ hydrolase [Finegoldia magna ATCC 53516]
          Length = 249

 Score = 42.3 bits (98), Expect = 0.48,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 15 QVHSSYS-LLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALE 57
           VHS YS    G  ++  I+ +  + +   I+ITD      ++    
Sbjct: 12 HVHSVYSRNNHGKSTIEEIVQEARSKKLKTISITDHGPGHIMYGIKR 58


>gi|224499097|ref|ZP_03667446.1| hypothetical protein LmonF1_05110 [Listeria monocytogenes Finland
           1988]
          Length = 570

 Score = 42.3 bits (98), Expect = 0.48,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|76801013|ref|YP_326021.1| hypothetical protein NP0722A [Natronomonas pharaonis DSM 2160]
 gi|76556878|emb|CAI48452.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160]
          Length = 256

 Score = 42.3 bits (98), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
          L VH+  S  +G+L+L  I +   A     +A+TD + L 
Sbjct: 6  LHVHTQNS--DGSLTLGAIPEAAKAAGLSTVAVTDHDRLH 43


>gi|313619288|gb|EFR91027.1| DNA Polymerase X family [Listeria innocua FSL S4-378]
          Length = 371

 Score = 42.3 bits (98), Expect = 0.49,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 140 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 174


>gi|167766771|ref|ZP_02438824.1| hypothetical protein CLOSS21_01279 [Clostridium sp. SS2/1]
 gi|167711525|gb|EDS22104.1| hypothetical protein CLOSS21_01279 [Clostridium sp. SS2/1]
 gi|291560703|emb|CBL39503.1| Predicted metal-dependent phosphoesterases (PHP family)
          [butyrate-producing bacterium SSC/2]
          Length = 275

 Score = 42.3 bits (98), Expect = 0.49,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +G  +   I+ K+ A      ++TD + +    E         ++ I G 
Sbjct: 4  LHIHSTCS--DGTFTPKQIVQKVIAKGLYGFSLTDHDTVDGIPEILAMDLPDDLKFIPGI 61

Query: 74 QLDIDMQDN 82
          ++  D    
Sbjct: 62 EISCDALHR 70


>gi|119476864|ref|ZP_01617145.1| hypothetical protein GP2143_09937 [marine gamma proteobacterium
           HTCC2143]
 gi|119449671|gb|EAW30908.1| hypothetical protein GP2143_09937 [marine gamma proteobacterium
           HTCC2143]
          Length = 425

 Score = 42.3 bits (98), Expect = 0.49,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 68/241 (28%), Gaps = 62/241 (25%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             HSS+S  +G +     +++   D   AIAIT+                          
Sbjct: 76  HTHSSFS--DGHVWPRIRVEEALRDGLDAIAITEH------------------------- 108

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
                       +    P P       +   A G   L+ +       +       I   
Sbjct: 109 -------LEWQPHMADLPHPDRNRAYQIAREANGDNPLMIIAGSEITRETPSG--HINAL 159

Query: 135 WLQEIGTEGLIMLTGGSSGPID---RAFFFNSSQVAEKRLLTFKKLFGDRLY-------- 183
           ++ +     L +       PI+   R   F      +  +     LF +  +        
Sbjct: 160 FITDANKMLLPIAAPEPFDPIEYYRRMHQFPEQDAVDAAVEQEAFLFWNHPWWHTDYVAD 219

Query: 184 --VNLQRHR---------GYDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             +  + HR         G +         Q  Q+A   +L ++  ++   L + DY+ H
Sbjct: 220 IPIIPEFHRKNAANGKIQGIEIANGFNYSEQAFQMALDLDLAVIGASDVHELIDWDYKPH 279

Query: 229 D 229
           +
Sbjct: 280 E 280


>gi|47097373|ref|ZP_00234925.1| PHP domain protein [Listeria monocytogenes str. 1/2a F6854]
 gi|254830015|ref|ZP_05234670.1| hypothetical protein Lmon1_01600 [Listeria monocytogenes 10403S]
 gi|254898608|ref|ZP_05258532.1| hypothetical protein LmonJ_02295 [Listeria monocytogenes J0161]
 gi|254911903|ref|ZP_05261915.1| PHP domain-containing protein [Listeria monocytogenes J2818]
 gi|254936228|ref|ZP_05267925.1| PHP domain-containing protein [Listeria monocytogenes F6900]
 gi|284801551|ref|YP_003413416.1| hypothetical protein LM5578_1304 [Listeria monocytogenes 08-5578]
 gi|284994693|ref|YP_003416461.1| hypothetical protein LM5923_1257 [Listeria monocytogenes 08-5923]
 gi|47014245|gb|EAL05226.1| PHP domain protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258608818|gb|EEW21426.1| PHP domain-containing protein [Listeria monocytogenes F6900]
 gi|284057113|gb|ADB68054.1| hypothetical protein LM5578_1304 [Listeria monocytogenes 08-5578]
 gi|284060160|gb|ADB71099.1| hypothetical protein LM5923_1257 [Listeria monocytogenes 08-5923]
 gi|293589861|gb|EFF98195.1| PHP domain-containing protein [Listeria monocytogenes J2818]
          Length = 570

 Score = 42.3 bits (98), Expect = 0.49,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|289705028|ref|ZP_06501440.1| PHP domain protein [Micrococcus luteus SK58]
 gi|289558240|gb|EFD51519.1| PHP domain protein [Micrococcus luteus SK58]
          Length = 286

 Score = 42.3 bits (98), Expect = 0.49,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 66/206 (32%), Gaps = 15/206 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G     +++   A      +A+TD +      E +Q A   G+  + G 
Sbjct: 9   LHTHSTES--DGTEPPADVVRAAARAGLDGLALTDHDTTAGWAEAAQAARETGLTLVPGM 66

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++     D + +        P  P+++       G  R   L+    ++ +      I  
Sbjct: 67  EMSCTSADGVSVHVLSYLHDPEDPALL----REVGLARDARLIRAQEMVRRLGADFPITW 122

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
             +QE   E   +     +  +           A   +L  +  +          H   D
Sbjct: 123 ELVQEHAAENATIGRPHLADALVTIGAVPDRSAAFTEILAGRSKYY-------VPHFAPD 175

Query: 194 RYRESQVVQLAYTHELPLVATNNSLF 219
                 +++ A    +P+ A   +  
Sbjct: 176 PAEAVALIRAA--GGVPVFAHPRARM 199


>gi|297566359|ref|YP_003685331.1| PHP domain-containing protein [Meiothermus silvanus DSM 9946]
 gi|296850808|gb|ADH63823.1| PHP domain protein [Meiothermus silvanus DSM 9946]
          Length = 576

 Score = 42.3 bits (98), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           LQVHS++S  +G  +L  +     A     +A+TD 
Sbjct: 341 LQVHSTWS--DGKNTLLELAQAAKALGYAYLAVTDH 374


>gi|47094126|ref|ZP_00231848.1| PHP domain protein [Listeria monocytogenes str. 4b H7858]
 gi|47017493|gb|EAL08304.1| PHP domain protein [Listeria monocytogenes str. 4b H7858]
          Length = 570

 Score = 42.3 bits (98), Expect = 0.49,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|291530565|emb|CBK96150.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Eubacterium siraeum 70/3]
 gi|291557841|emb|CBL34958.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Eubacterium siraeum V10Sc8a]
          Length = 271

 Score = 42.3 bits (98), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 17/76 (22%)

Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNL------------FS-----ALEFSQKACA 64
          + +G+L L   + +         AITD + L            +      A+EFS     
Sbjct: 1  MSDGSLGLEETIAQAKRYGIDYFAITDHDTLSSSSRAVVLGERYGVNVIPAVEFSTYDSK 60

Query: 65 AGIQPIIGCQLDIDMQ 80
           G +  I C       
Sbjct: 61 HGTKAHIICYNPEKPN 76


>gi|226223831|ref|YP_002757938.1| DNA polymerase beta [Listeria monocytogenes Clip81459]
 gi|225876293|emb|CAS05002.1| Putative DNA polymerase beta [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
          Length = 570

 Score = 42.3 bits (98), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|217964703|ref|YP_002350381.1| DNA polymerase X family protein [Listeria monocytogenes HCC23]
 gi|217333973|gb|ACK39767.1| DNA polymerase X family protein [Listeria monocytogenes HCC23]
 gi|307570736|emb|CAR83915.1| DNA polymerase X family protein [Listeria monocytogenes L99]
          Length = 570

 Score = 42.3 bits (98), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|254932891|ref|ZP_05266250.1| PHP domain-containing protein [Listeria monocytogenes HPB2262]
 gi|293584445|gb|EFF96477.1| PHP domain-containing protein [Listeria monocytogenes HPB2262]
          Length = 570

 Score = 42.3 bits (98), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|254828591|ref|ZP_05233278.1| PHP domain-containing protein [Listeria monocytogenes FSL N3-165]
 gi|258600989|gb|EEW14314.1| PHP domain-containing protein [Listeria monocytogenes FSL N3-165]
          Length = 570

 Score = 42.3 bits (98), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|254823515|ref|ZP_05228516.1| PHP domain-containing protein [Listeria monocytogenes FSL J1-194]
 gi|254852900|ref|ZP_05242248.1| PHP domain-containing protein [Listeria monocytogenes FSL R2-503]
 gi|255521230|ref|ZP_05388467.1| hypothetical protein LmonocFSL_08400 [Listeria monocytogenes FSL
           J1-175]
 gi|300764380|ref|ZP_07074374.1| PHP domain-containing protein [Listeria monocytogenes FSL N1-017]
 gi|258606235|gb|EEW18843.1| PHP domain-containing protein [Listeria monocytogenes FSL R2-503]
 gi|293592735|gb|EFG00496.1| PHP domain-containing protein [Listeria monocytogenes FSL J1-194]
 gi|300515032|gb|EFK42085.1| PHP domain-containing protein [Listeria monocytogenes FSL N1-017]
 gi|328466625|gb|EGF37760.1| hypothetical protein LM1816_08608 [Listeria monocytogenes 1816]
          Length = 570

 Score = 42.3 bits (98), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|16800263|ref|NP_470531.1| hypothetical protein lin1194 [Listeria innocua Clip11262]
 gi|16413653|emb|CAC96425.1| lin1194 [Listeria innocua Clip11262]
          Length = 570

 Score = 42.3 bits (98), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|330817191|ref|YP_004360896.1| hypothetical protein bgla_1g23130 [Burkholderia gladioli BSR3]
 gi|327369584|gb|AEA60940.1| hypothetical protein bgla_1g23130 [Burkholderia gladioli BSR3]
          Length = 214

 Score = 42.3 bits (98), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++  A + PF S +D  SRV      
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKSADDLASRVKGLGQK 74


>gi|313624053|gb|EFR94137.1| DNA polymerase IV fused to PHP phosphatase [Listeria innocua FSL
           J1-023]
          Length = 570

 Score = 42.3 bits (98), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|117620566|ref|YP_856383.1| hypothetical protein AHA_1849 [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561973|gb|ABK38921.1| conserved domain protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 851

 Score = 42.3 bits (98), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 6/101 (5%)

Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
            T      KAAL D   A ++    +    + +      P   Q +A+  +  E  +   
Sbjct: 543 GTLSGNDIKAALADEELAGKLRMLFIKHKSEWVKPGQEWPRLKQELAEQPKLYEYAMQVH 602

Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIV------IGDRPLSQ 541
           +    +E + K+ G  +    H AG++      + D  + +
Sbjct: 603 NNMAWMEDASKILGDIKPWFIHPAGMMGLVADPVSDDEMDE 643


>gi|16331618|ref|NP_442346.1| ComE ORF1 [Synechocystis sp. PCC 6803]
 gi|1001681|dbj|BAA10416.1| ComE ORF1 [Synechocystis sp. PCC 6803]
          Length = 553

 Score = 42.3 bits (98), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 6/126 (4%)

Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC----QDARQFN 813
           ++    +H     V+  Q A +  HY  E        E      ++       Q+     
Sbjct: 420 NWSPAANHNNDETVLVLQNAQIAAHYQRELDRLYAVTEYGLPPTVQARIDRQEQECANPR 479

Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
               P +  TP     +        L ++ G+G +TA  I+     K F SLED   RV 
Sbjct: 480 PSPKPLAKATPNRLVNLNRG-SQEELESLPGIGPSTAEKIISTREQKAFTSLEDLG-RVK 537

Query: 874 SKKLNR 879
               ++
Sbjct: 538 GIGPSK 543


>gi|311746059|ref|ZP_07719844.1| PHP domain protein [Algoriphagus sp. PR1]
 gi|126576276|gb|EAZ80554.1| PHP domain protein [Algoriphagus sp. PR1]
          Length = 555

 Score = 42.3 bits (98), Expect = 0.51,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS+YS  +G  SL  + +         + I+D 
Sbjct: 315 LHNHSTYS--DGKHSLRQMAEACRDLGYEYLGISDH 348


>gi|46907450|ref|YP_013839.1| hypothetical protein LMOf2365_1240 [Listeria monocytogenes str. 4b
           F2365]
 gi|46880718|gb|AAT04016.1| PHP domain protein [Listeria monocytogenes serotype 4b str. F2365]
          Length = 570

 Score = 42.3 bits (98), Expect = 0.51,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|170694766|ref|ZP_02885917.1| PHP domain protein [Burkholderia graminis C4D1M]
 gi|170140397|gb|EDT08574.1| PHP  domain protein [Burkholderia graminis C4D1M]
          Length = 285

 Score = 42.3 bits (98), Expect = 0.51,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 6/108 (5%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           L Q +  +     L  HS+ S  +G  +  ++  +  A      A+TD + L    E  +
Sbjct: 5   LLQTMMNAD----LHCHSTVS--DGQFAPADVARRAHAGGVTLWALTDHDELGGQQEARE 58

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
            A   G+  + G ++ +                 +   I  L  T  G
Sbjct: 59  AAAELGMDYLSGVEISVTWAARTVHIVGLGIDPTSSVLIDGLARTRNG 106


>gi|94676885|ref|YP_588765.1| putative hydrolase [Baumannia cicadellinicola str. Hc
          (Homalodisca coagulata)]
 gi|166988625|sp|Q1LTE9|Y316_BAUCH RecName: Full=Putative hydrolase BCI_0316
 gi|94220035|gb|ABF14194.1| PHP family protein [Baumannia cicadellinicola str. Hc
          (Homalodisca coagulata)]
          Length = 244

 Score = 42.3 bits (98), Expect = 0.51,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 11/44 (25%)

Query: 12 VHLQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          V L VH+     +YS L+      + + +        IAITD  
Sbjct: 4  VDLHVHTIASTHAYSTLQ------DYIAEAKQKGIKLIAITDHG 41


>gi|312602641|ref|YP_004022486.1| DNA polymerase III subunit alpha [Burkholderia rhizoxinica HKI 454]
 gi|312169955|emb|CBW76967.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia
            rhizoxinica HKI 454]
          Length = 88

 Score = 41.9 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +V  +Q+  T KG  + +V   +         +P
Sbjct: 3    LVTVRQRPGTAKG--VLFVMLEDERGHTNVIIWP 34


>gi|270262117|ref|ZP_06190389.1| phosphotransferase domain-containing protein [Serratia odorifera
          4Rx13]
 gi|270043993|gb|EFA17085.1| phosphotransferase domain-containing protein [Serratia odorifera
          4Rx13]
          Length = 330

 Score = 41.9 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  H++ S  +G L+   ++ +    +   +AITD + 
Sbjct: 51 LHSHTTAS--DGYLTPAQLVQRAVEMRVGVLAITDHDT 86


>gi|298377902|ref|ZP_06987851.1| ABC transporter [Bacteroides sp. 3_1_19]
 gi|298265146|gb|EFI06810.1| ABC transporter [Bacteroides sp. 3_1_19]
          Length = 982

 Score = 41.9 bits (97), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
          L +H+  S  +G  +   IL + AA +   IA+TD + + 
Sbjct: 14 LHIHTDAS--DGKGTCEEILKEAAAKKISCIAVTDHHTVA 51


>gi|258621659|ref|ZP_05716690.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|262171791|ref|ZP_06039469.1| PHP family hydrolase [Vibrio mimicus MB-451]
 gi|258585890|gb|EEW10608.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|261892867|gb|EEY38853.1| PHP family hydrolase [Vibrio mimicus MB-451]
          Length = 290

 Score = 41.9 bits (97), Expect = 0.52,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++++  +     +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIERAVSFNIDVLAITDHDTVAALSDARAYITEQQYPLQLVN 62


>gi|258423814|ref|ZP_05686700.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A9635]
 gi|257846046|gb|EEV70074.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A9635]
          Length = 570

 Score = 41.9 bits (97), Expect = 0.52,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|255025808|ref|ZP_05297794.1| hypothetical protein LmonocytFSL_04760 [Listeria monocytogenes FSL
           J2-003]
          Length = 555

 Score = 41.9 bits (97), Expect = 0.52,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|329313811|gb|AEB88224.1| DNA-dependent DNA polymerase beta chain [Staphylococcus aureus
           subsp. aureus T0131]
          Length = 570

 Score = 41.9 bits (97), Expect = 0.52,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|323440693|gb|EGA98403.1| hypothetical protein SAO11_0545 [Staphylococcus aureus O11]
          Length = 570

 Score = 41.9 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|309777202|ref|ZP_07672165.1| PHP domain protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915072|gb|EFP60849.1| PHP domain protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 295

 Score = 41.9 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L +HS YS  +G      +L          +A+ D N++  +          GI  I 
Sbjct: 6  LHMHSRYSD-DGQYEPTELLQMCKKAGLDMMAVADHNSVRGSRIALHHQAEYGITCIP 62


>gi|298694431|gb|ADI97653.1| DNA-dependent DNA polymerase beta chain [Staphylococcus aureus
           subsp. aureus ED133]
          Length = 570

 Score = 41.9 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|307729237|ref|YP_003906461.1| PHP domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307583772|gb|ADN57170.1| PHP domain protein [Burkholderia sp. CCGE1003]
          Length = 277

 Score = 41.9 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  +  ++  +  A      A+TD + L    E  Q A A G+  + G 
Sbjct: 6   LHCHSTVS--DGQFAPADVARRAHAGGVTLWALTDHDELGGQQEARQAAEALGMGYLSGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           +  +                 +   I  L  T  G
Sbjct: 64  ETSVTWAARTVHIVGLGIDPTSSVLIDGLARTRNG 98


>gi|269215626|ref|ZP_06159480.1| competence protein [Slackia exigua ATCC 700122]
 gi|269131113|gb|EEZ62188.1| competence protein [Slackia exigua ATCC 700122]
          Length = 258

 Score = 41.9 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 838 SLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
           +L  I GVG  TAR I+E      PF S++D  +RV+     +  LE +  +  
Sbjct: 207 ALDRIPGVGPATARAIVEEREKSGPFSSVDD-ITRVEGIGKKK--LERMRDSLC 257


>gi|315282006|ref|ZP_07870513.1| bifunctional DNA polymerase/histidinol phosphatase [Listeria
           marthii FSL S4-120]
 gi|313614351|gb|EFR87988.1| bifunctional DNA polymerase/histidinol phosphatase [Listeria
           marthii FSL S4-120]
          Length = 570

 Score = 41.9 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|262340925|ref|YP_003283780.1| ATP-dependent DNA helicase RecG [Blattabacterium sp. (Blattella
            germanica) str. Bge]
 gi|262272262|gb|ACY40170.1| ATP-dependent DNA helicase RecG [Blattabacterium sp. (Blattella
            germanica) str. Bge]
          Length = 686

 Score = 41.9 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 15/98 (15%)

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSG--H-PLDVYKPILRKMGIKGYEESVATIRGNN 994
            ++L+K  + ++ ++    + +L FY  G  H P+           +K   E       N 
Sbjct: 16   LSLKKAHLFHTELKLHTYEDLLFFYPKGYIHLPI-----------LKNISELSKNNNNNF 64

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +++   + + ++   +KG         +     E  +F
Sbjct: 65   VKILGEITNIEEINYKKGKIW-IARLEDKTGFIELVWF 101


>gi|90422975|ref|YP_531345.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
 gi|90104989|gb|ABD87026.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Rhodopseudomonas palustris BisB18]
          Length = 850

 Score = 41.9 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 49/129 (37%), Gaps = 2/129 (1%)

Query: 18  SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDI 77
           + ++LLE   + ++ + ++       +AI D    +S+LE+ +      ++       ++
Sbjct: 707 TEFALLESTKANSDTIRRVRELGIS-VAIDDFGTGYSSLEYLRTYRVNRLKIPQQFMTEV 765

Query: 78  DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR-ICLSWL 136
            ++       +          +  +    E  ++L  L+S      QG    R I    L
Sbjct: 766 AIESGDAAIVRAALVLARELGMDAIAEGVETPEQLAFLLSAGCRNVQGYYFSRPIPAEAL 825

Query: 137 QEIGTEGLI 145
           + +   G+I
Sbjct: 826 RPLLACGVI 834


>gi|323442364|gb|EGA99993.1| hypothetical protein SAO46_1700 [Staphylococcus aureus O46]
          Length = 570

 Score = 41.9 bits (97), Expect = 0.54,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|91784221|ref|YP_559427.1| hypothetical protein Bxe_A1580 [Burkholderia xenovorans LB400]
 gi|91688175|gb|ABE31375.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 276

 Score = 41.9 bits (97), Expect = 0.54,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  +  ++  +  A      A+TD + L    E    A A G+  + G 
Sbjct: 5   LHCHSTVS--DGQFAPADVARRAHAGGVTLWALTDHDELGGQREAKSTAEALGMAYLSGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           ++ +                 +   I  L  T  G
Sbjct: 63  EISVTWASRTVHIVGLGIDPTSAVLIDGLARTRNG 97


>gi|148273322|ref|YP_001222883.1| hypothetical protein CMM_2138 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831252|emb|CAN02208.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 533

 Score = 41.9 bits (97), Expect = 0.54,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 9/59 (15%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF--------SALEFSQKACAA 65
            VH+ +S  +G   + + + +  A+    I +TD  N          + + F ++A   
Sbjct: 56  HVHTLFS-NDGKYRVRDHIRQAVANGVQWIVLTDHGNTAHSTKGSVDAIVPFIEEARKE 113


>gi|82750750|ref|YP_416491.1| hypothetical protein SAB1007 [Staphylococcus aureus RF122]
 gi|82656281|emb|CAI80695.1| DNA-dependent DNA polymerase beta chain [Staphylococcus aureus
           RF122]
          Length = 570

 Score = 41.9 bits (97), Expect = 0.54,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|21282755|ref|NP_645843.1| hypothetical protein MW1026 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485981|ref|YP_043202.1| hypothetical protein SAS1077 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651752|ref|YP_186016.1| hypothetical protein SACOL1153 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87162139|ref|YP_493740.1| hypothetical protein SAUSA300_1042 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194844|ref|YP_499642.1| hypothetical protein SAOUHSC_01098 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221267|ref|YP_001332089.1| hypothetical protein NWMN_1055 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509317|ref|YP_001574976.1| hypothetical protein USA300HOU_1078 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221140459|ref|ZP_03564952.1| hypothetical protein SauraJ_02341 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|258451840|ref|ZP_05699861.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A5948]
 gi|262048724|ref|ZP_06021606.1| hypothetical protein SAD30_1554 [Staphylococcus aureus D30]
 gi|282919920|ref|ZP_06327649.1| rpoD hypothetical protein [Staphylococcus aureus A9765]
 gi|284024068|ref|ZP_06378466.1| hypothetical protein Saura13_05734 [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848133|ref|ZP_06788880.1| hypothetical protein SKAG_00192 [Staphylococcus aureus A9754]
 gi|297208219|ref|ZP_06924649.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300912296|ref|ZP_07129739.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304381300|ref|ZP_07363953.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|21204193|dbj|BAB94891.1| DNA-dependent DNA polymerase beta chain [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244424|emb|CAG42852.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57285938|gb|AAW38032.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus COL]
 gi|87128113|gb|ABD22627.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202402|gb|ABD30212.1| DNA-dependent DNA polymerase beta chain, putative [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|150374067|dbj|BAF67327.1| DNA-dependent DNA polymerase beta chain [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|160368126|gb|ABX29097.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|257860448|gb|EEV83275.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A5948]
 gi|259163180|gb|EEW47740.1| hypothetical protein SAD30_1554 [Staphylococcus aureus D30]
 gi|269940637|emb|CBI49016.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282594636|gb|EFB99620.1| rpoD hypothetical protein [Staphylococcus aureus A9765]
 gi|294824933|gb|EFG41355.1| hypothetical protein SKAG_00192 [Staphylococcus aureus A9754]
 gi|296886958|gb|EFH25861.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300886542|gb|EFK81744.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|302750966|gb|ADL65143.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340283|gb|EFM06224.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|315196866|gb|EFU27209.1| hypothetical protein CGSSa01_03830 [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320143099|gb|EFW34889.1| PHP domain protein [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329728864|gb|EGG65285.1| PHP domain protein [Staphylococcus aureus subsp. aureus 21193]
 gi|329730727|gb|EGG67106.1| PHP domain protein [Staphylococcus aureus subsp. aureus 21189]
          Length = 570

 Score = 41.9 bits (97), Expect = 0.54,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|224419232|ref|ZP_03657238.1| competence protein ComEA helix-hairpin-helix region [Helicobacter
           canadensis MIT 98-5491]
          Length = 67

 Score = 41.9 bits (97), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDF 868
           L +IKG+G   A+ I++     PF S++D 
Sbjct: 28  LMSIKGIGEAKAQAIIDYREKTPFKSIDDL 57


>gi|253733621|ref|ZP_04867786.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|253728420|gb|EES97149.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus aureus
           subsp. aureus TCH130]
          Length = 477

 Score = 41.9 bits (97), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 244 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 276


>gi|229815190|ref|ZP_04445526.1| hypothetical protein COLINT_02236 [Collinsella intestinalis DSM
           13280]
 gi|229809200|gb|EEP44966.1| hypothetical protein COLINT_02236 [Collinsella intestinalis DSM
           13280]
          Length = 246

 Score = 41.9 bits (97), Expect = 0.55,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 819 PSVNTPC-----VDFKVGDNRIYYS-LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871
           P V          D  V  NR   S L A+ GVG +TAR I+E   A+ PF ++ED    
Sbjct: 170 PDVGASAQGAATADGPVDINRASESDLDALPGVGPSTARAIVEDRDANGPFSTIEDLMRV 229

Query: 872 VDSKKLNRRVLESLV 886
               +     L+S +
Sbjct: 230 SGIGEKKFEKLKSSI 244


>gi|320141042|gb|EFW32889.1| PHP domain protein [Staphylococcus aureus subsp. aureus MRSA131]
          Length = 570

 Score = 41.9 bits (97), Expect = 0.56,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|288573328|ref|ZP_06391685.1| PHP domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569069|gb|EFC90626.1| PHP domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 246

 Score = 41.9 bits (97), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 7/73 (9%)

Query: 12 VHLQVHSSYSL---LE-GALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          V L +H+  S    LE GA     I+ +        +A+TD N+  +    +  A    I
Sbjct: 6  VDLHLHTVLSPCGELEMGA---PEIVSRAVEQGIDLLAVTDHNSCLNYPALAGAAEGQPI 62

Query: 68 QPIIGCQLDIDMQ 80
          + I G ++     
Sbjct: 63 RIIPGMEIQSAED 75


>gi|113954059|ref|YP_731994.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9311]
 gi|122945488|sp|Q0I6C8|DNLJ_SYNS3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|113881410|gb|ABI46368.1| DNA ligase, NAD-dependent [Synechococcus sp. CC9311]
          Length = 697

 Score = 41.9 bits (97), Expect = 0.57,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 26/171 (15%)

Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAA--IKGVGTTTARHIMEASADKPFDSLE--DFCS 870
           +     +N+ C     G  R + S  A  I G+G+     +++    +    L   D   
Sbjct: 439 ESATRCINSSCPAILRGALRHWVSKGAMDIDGLGSKLIEQLVDRGLVQSIADLYRLDMAL 498

Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ-----------------SLDNIQKYAQ 913
               +++  +  E+L+ A        SR Q                    ++      A 
Sbjct: 499 LGSLERMGSKSAENLIQA-----LNASRSQGWAKQLYGLGIHHVGDVNAKAITTAFPNAD 553

Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            + +   +  E+I A          +L+++    ++ R  +E R LGF  S
Sbjct: 554 SLNQAACHAPESITAIFGVGKEIAQSLQQWFSSPANQRLLDELRSLGFSLS 604


>gi|107022132|ref|YP_620459.1| hypothetical protein Bcen_0575 [Burkholderia cenocepacia AU 1054]
 gi|116689077|ref|YP_834700.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Burkholderia cenocepacia HI2424]
 gi|170732365|ref|YP_001764312.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Burkholderia cenocepacia MC0-3]
 gi|254245984|ref|ZP_04939305.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184]
 gi|105892321|gb|ABF75486.1| conserved hypothetical protein [Burkholderia cenocepacia AU 1054]
 gi|116647166|gb|ABK07807.1| helix-hairpin-helix motif protein [Burkholderia cenocepacia HI2424]
 gi|124870760|gb|EAY62476.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184]
 gi|169815607|gb|ACA90190.1| helix-hairpin-helix motif [Burkholderia cenocepacia MC0-3]
          Length = 115

 Score = 41.9 bits (97), Expect = 0.57,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882
                   +     +L  IKG+G   A+ I++   A  PF + +D  +RV  K +    +
Sbjct: 17  SAWAAVDVNTANEDALVGIKGIGPARAKAILDERGARGPFRNADDLATRV--KGMGGHTV 74

Query: 883 ESLVFAGA 890
           E L   G 
Sbjct: 75  ERLQQEGL 82


>gi|121595727|ref|YP_987623.1| phosphotransferase domain-containing protein [Acidovorax sp.
          JS42]
 gi|222111933|ref|YP_002554197.1| php domain-containing protein [Acidovorax ebreus TPSY]
 gi|120607807|gb|ABM43547.1| PHP C-terminal domain protein [Acidovorax sp. JS42]
 gi|221731377|gb|ACM34197.1| PHP domain protein [Acidovorax ebreus TPSY]
          Length = 292

 Score = 41.9 bits (97), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  S  +G L+   +  +  A+     A+TD +
Sbjct: 9  LHCHSVVS--DGTLTPEALAARAHANGVALWALTDHD 43


>gi|148267635|ref|YP_001246578.1| hypothetical protein SaurJH9_1202 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393690|ref|YP_001316365.1| hypothetical protein SaurJH1_1224 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|147740704|gb|ABQ49002.1| PHP C-terminal domain protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946142|gb|ABR52078.1| PHP domain protein [Staphylococcus aureus subsp. aureus JH1]
          Length = 570

 Score = 41.9 bits (97), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|15924133|ref|NP_371667.1| hypothetical protein SAV1143 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926727|ref|NP_374260.1| hypothetical protein SA0990 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156979465|ref|YP_001441724.1| hypothetical protein SAHV_1134 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253317074|ref|ZP_04840287.1| hypothetical protein SauraC_13244 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255005929|ref|ZP_05144530.2| hypothetical protein SauraM_05650 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795127|ref|ZP_05644106.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A9781]
 gi|258407165|ref|ZP_05680314.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A9763]
 gi|258421744|ref|ZP_05684665.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A9719]
 gi|258432912|ref|ZP_05688601.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A9299]
 gi|258443402|ref|ZP_05691745.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A8115]
 gi|258446075|ref|ZP_05694237.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A6300]
 gi|258449812|ref|ZP_05697910.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A6224]
 gi|258454911|ref|ZP_05702874.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A5937]
 gi|269202755|ref|YP_003282024.1| hypothetical protein SAAV_1110 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282894170|ref|ZP_06302401.1| hypothetical protein SGAG_01521 [Staphylococcus aureus A8117]
 gi|282928665|ref|ZP_06336262.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|295405947|ref|ZP_06815756.1| hypothetical protein SMAG_01105 [Staphylococcus aureus A8819]
 gi|296275630|ref|ZP_06858137.1| hypothetical protein SauraMR_04760 [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297246507|ref|ZP_06930345.1| hypothetical protein SLAG_02580 [Staphylococcus aureus A8796]
 gi|13700943|dbj|BAB42239.1| DNA-dependent DNA polymerase beta chain [Staphylococcus aureus
           subsp. aureus N315]
 gi|14246913|dbj|BAB57305.1| DNA-dependent DNA polymerase beta chain [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|156721600|dbj|BAF78017.1| DNA-dependent DNA polymerase beta chain [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257789099|gb|EEV27439.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A9781]
 gi|257841320|gb|EEV65765.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A9763]
 gi|257842077|gb|EEV66505.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A9719]
 gi|257849352|gb|EEV73329.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A9299]
 gi|257851492|gb|EEV75431.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A8115]
 gi|257855133|gb|EEV78074.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A6300]
 gi|257856732|gb|EEV79635.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A6224]
 gi|257862791|gb|EEV85556.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A5937]
 gi|262075045|gb|ACY11018.1| hypothetical protein SAAV_1110 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282589704|gb|EFB94790.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|282763656|gb|EFC03785.1| hypothetical protein SGAG_01521 [Staphylococcus aureus A8117]
 gi|285816823|gb|ADC37310.1| DNA polymerase X family [Staphylococcus aureus 04-02981]
 gi|294969382|gb|EFG45402.1| hypothetical protein SMAG_01105 [Staphylococcus aureus A8819]
 gi|297176613|gb|EFH35876.1| hypothetical protein SLAG_02580 [Staphylococcus aureus A8796]
 gi|312829536|emb|CBX34378.1| PHP domain protein [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128540|gb|EFT84545.1| hypothetical protein CGSSa03_01265 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329725170|gb|EGG61659.1| PHP domain protein [Staphylococcus aureus subsp. aureus 21172]
          Length = 570

 Score = 41.9 bits (97), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|297680661|ref|XP_002818101.1| PREDICTED: endonuclease/exonuclease/phosphatase family
           domain-containing protein 1-like isoform 1 [Pongo
           abelii]
 gi|297680663|ref|XP_002818102.1| PREDICTED: endonuclease/exonuclease/phosphatase family
           domain-containing protein 1-like isoform 2 [Pongo
           abelii]
          Length = 569

 Score = 41.9 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 147 LMSVRGLSEKMALSIVDFRREHGPFRSVEDLVR 179


>gi|296209068|ref|XP_002751376.1| PREDICTED: endonuclease/exonuclease/phosphatase family
           domain-containing protein 1 [Callithrix jacchus]
          Length = 565

 Score = 41.9 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 147 LMSVRGLSEKMALSIVDFRREHGPFRSVEDLVR 179


>gi|258626396|ref|ZP_05721243.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258581448|gb|EEW06350.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 290

 Score = 41.9 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++++  +     +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIERAVSFNIDVLAITDHDTVAALSDARAYITEQQYPLQLVN 62


>gi|168185765|ref|ZP_02620400.1| putative DNA polymerase beta [Clostridium botulinum C str.
          Eklund]
 gi|169296182|gb|EDS78315.1| putative DNA polymerase beta [Clostridium botulinum C str.
          Eklund]
          Length = 249

 Score = 41.9 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
            H+ +S   G  ++   ++     +   IAITD  
Sbjct: 8  HTHTKFS--HGVGTIEENVEFAIRKKLKTIAITDHG 41


>gi|114612832|ref|XP_527721.2| PREDICTED: similar to KIAA1706 protein isoform 4 [Pan troglodytes]
 gi|114612834|ref|XP_001169567.1| PREDICTED: similar to KIAA1706 protein isoform 2 [Pan troglodytes]
 gi|114612836|ref|XP_001169584.1| PREDICTED: similar to KIAA1706 protein isoform 3 [Pan troglodytes]
          Length = 569

 Score = 41.9 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 147 LMSVRGLSEKMALSIVDFRREHGPFRSVEDLVR 179


>gi|114612838|ref|XP_001169508.1| PREDICTED: similar to KIAA1706 protein isoform 1 [Pan troglodytes]
          Length = 518

 Score = 41.9 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 147 LMSVRGLSEKMALSIVDFRREHGPFRSVEDLVR 179


>gi|109066841|ref|XP_001103689.1| PREDICTED: endonuclease/exonuclease/phosphatase family
           domain-containing protein 1-like isoform 1 [Macaca
           mulatta]
          Length = 569

 Score = 41.9 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 147 LMSVRGLSEKMALSIVDFRREHGPFRSVEDLVR 179


>gi|22213026|gb|AAH25571.1| Endonuclease/exonuclease/phosphatase family domain containing 1
           [Mus musculus]
          Length = 569

 Score = 41.9 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 147 LMSVRGLSEKMALSIVDYRREHGPFRSVEDLVR 179


>gi|71043966|ref|NP_085139.2| endonuclease/exonuclease/phosphatase family domain-containing
           protein 1 [Homo sapiens]
 gi|296434489|sp|Q7L9B9|EEPD1_HUMAN RecName: Full=Endonuclease/exonuclease/phosphatase family
           domain-containing protein 1
          Length = 569

 Score = 41.9 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 147 LMSVRGLSEKMALSIVDFRREHGPFRSVEDLVR 179


>gi|71043968|ref|NP_080465.3| endonuclease/exonuclease/phosphatase family domain-containing
           protein 1 [Mus musculus]
 gi|123783293|sp|Q3TGW2|EEPD1_MOUSE RecName: Full=Endonuclease/exonuclease/phosphatase family
           domain-containing protein 1
 gi|74214399|dbj|BAE40436.1| unnamed protein product [Mus musculus]
 gi|148693355|gb|EDL25302.1| RIKEN cDNA 2310005P05 [Mus musculus]
          Length = 569

 Score = 41.9 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 147 LMSVRGLSEKMALSIVDYRREHGPFRSVEDLVR 179


>gi|12843816|dbj|BAB26125.1| unnamed protein product [Mus musculus]
          Length = 569

 Score = 41.9 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 147 LMSVRGLSEKMALSIVDYRREHGPFRSVEDLVR 179


>gi|50511063|dbj|BAD32517.1| mKIAA1706 protein [Mus musculus]
          Length = 607

 Score = 41.9 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 185 LMSVRGLSEKMALSIVDYRREHGPFRSVEDLVR 217


>gi|12697957|dbj|BAB21797.1| KIAA1706 protein [Homo sapiens]
          Length = 573

 Score = 41.9 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 151 LMSVRGLSEKMALSIVDFRREHGPFRSVEDLVR 183


>gi|14042026|dbj|BAB55076.1| unnamed protein product [Homo sapiens]
 gi|41388939|gb|AAH65518.1| EEPD1 protein [Homo sapiens]
 gi|51094729|gb|EAL23976.1| KIAA1706 protein [Homo sapiens]
 gi|119614469|gb|EAW94063.1| KIAA1706 protein [Homo sapiens]
 gi|168270656|dbj|BAG10121.1| KIAA1706 protein [synthetic construct]
          Length = 569

 Score = 41.9 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 147 LMSVRGLSEKMALSIVDFRREHGPFRSVEDLVR 179


>gi|255030161|ref|ZP_05302112.1| hypothetical protein LmonL_15721 [Listeria monocytogenes LO28]
          Length = 293

 Score = 41.9 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 64 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 98


>gi|223043722|ref|ZP_03613765.1| PHP domain protein [Staphylococcus capitis SK14]
 gi|222442819|gb|EEE48921.1| PHP domain protein [Staphylococcus capitis SK14]
          Length = 570

 Score = 41.9 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+  +++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIREMVEANIAKGYQFMVITDH 369


>gi|121594814|ref|YP_986710.1| hypothetical protein Ajs_2473 [Acidovorax sp. JS42]
 gi|120606894|gb|ABM42634.1| conserved hypothetical protein [Acidovorax sp. JS42]
          Length = 114

 Score = 41.9 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
           L  ++G+G   +  I+   A  PF    D  +RV     
Sbjct: 34  LDGVRGIGPAMSSRILAERARGPFQDWSDLIARVKGIGP 72


>gi|298244345|ref|ZP_06968151.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297551826|gb|EFH85691.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 286

 Score = 41.9 bits (97), Expect = 0.59,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L +H++YS  +G  S   +L  +A +    IA+TD +
Sbjct: 13 LHMHTTYS--DGRWSAEELLAYVAQEGFDVIAVTDHD 47


>gi|169831315|ref|YP_001717297.1| phosphotransferase domain-containing protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638159|gb|ACA59665.1| PHP C-terminal domain protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 578

 Score = 41.9 bits (97), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VHS YS  +GA +L +I  +        + + D 
Sbjct: 341 HVHSVYS--DGAGTLEDIAAEALRLGLEWVGVCDH 373


>gi|169334724|ref|ZP_02861917.1| hypothetical protein ANASTE_01130 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169257462|gb|EDS71428.1| hypothetical protein ANASTE_01130 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 281

 Score = 41.9 bits (97), Expect = 0.60,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 2/43 (4%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          V L  H++ S  +G   +  I+            ITD    + 
Sbjct: 4  VSLHNHTTLS--DGKTDMEEIVLAAIERGFTHFGITDHVCTYG 44


>gi|268324198|emb|CBH37786.1| conserved hypothetical protein, DUF655 family [uncultured archaeon]
          Length = 201

 Score = 41.9 bits (97), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%)

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             ++L  + G+G      I+E   + PF   E    RV       +++   + 
Sbjct: 133 RLHTLDLLPGIGKKLMWAILEERKEGPFSDFETLTKRVKGLHHPEKIIAKRIE 185


>gi|182416382|ref|YP_001821448.1| phosphotransferase domain-containing protein [Opitutus terrae
          PB90-1]
 gi|177843596|gb|ACB77848.1| PHP domain protein [Opitutus terrae PB90-1]
          Length = 387

 Score = 41.9 bits (97), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G++  N  + +   D   AIA+TD 
Sbjct: 53 HQHTVFS--DGSVWPNIRVQEAERDGLDAIAVTDH 85


>gi|300871713|ref|YP_003786586.1| putative hydrolase [Brachyspira pilosicoli 95/1000]
 gi|300689414|gb|ADK32085.1| putative hydrolase [Brachyspira pilosicoli 95/1000]
          Length = 237

 Score = 41.9 bits (97), Expect = 0.61,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 67/209 (32%), Gaps = 25/209 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+  S      +++ I++        A+AITD               + G +P+   
Sbjct: 7   LHTHTIVS-QHAFSTVDEIINAAKDKGFLAVAITDHG----------PKSSDGAKPVHFR 55

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +    +      N  +       +I+      +  + ++E +     +        I  
Sbjct: 56  SMHNIPE----YVNGIRVLRGAEANIIDYDGNIDLRKNVLECL---DFVIASYHEDSITP 108

Query: 134 SWLQEIGTEGLIMLT----GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           S + E  T G I L         G +    F    +   K    + KL       + +  
Sbjct: 109 SNI-ESHTNGYIGLIKNSYVDCLGHVGNPKFAFDMEKIIKLCKDYNKLIEIN-SASFKVR 166

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSL 218
           +G D     +V  L   + L +V T++S 
Sbjct: 167 KGSD-TNCKEVALLCKKYNLNIVVTSDSH 194


>gi|296157754|ref|ZP_06840588.1| putative DNA uptake protein, ComEA-like protein [Burkholderia sp.
           Ch1-1]
 gi|295892000|gb|EFG71784.1| putative DNA uptake protein, ComEA-like protein [Burkholderia sp.
           Ch1-1]
          Length = 199

 Score = 41.9 bits (97), Expect = 0.61,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   A+ I++    + PF + +D  +RV      
Sbjct: 33  ALESVKGIGPVHAKAIIDERTKNGPFKNADDLATRVKGIGTK 74


>gi|237737011|ref|ZP_04567492.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC
          9817]
 gi|229420873|gb|EEO35920.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC
          9817]
          Length = 207

 Score = 41.9 bits (97), Expect = 0.61,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 12 VHLQVH-SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          V L +H S YS  +  +S+  I+++        IA+T+  ++
Sbjct: 3  VDLHLHDSKYSS-DSHVSIAEIIEEARRKGLDGIALTNHESV 43


>gi|209519351|ref|ZP_03268150.1| conserved hypothetical protein [Burkholderia sp. H160]
 gi|209500235|gb|EEA00292.1| conserved hypothetical protein [Burkholderia sp. H160]
          Length = 124

 Score = 41.9 bits (97), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           L  IKG+G   A+ I++   A  PF    D   RV     +
Sbjct: 32  LRGIKGIGAARAKAILDERTAHGPFKDAADLGKRVKGMGGH 72


>gi|91783444|ref|YP_558650.1| putative DNA uptake protein, ComEA-like [Burkholderia xenovorans
           LB400]
 gi|91687398|gb|ABE30598.1| Putative DNA uptake protein, ComEA-like protein [Burkholderia
           xenovorans LB400]
          Length = 201

 Score = 41.9 bits (97), Expect = 0.61,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   A+ I++    + PF + +D  +RV      
Sbjct: 33  ALESVKGIGPVHAKAIIDERTKNGPFKNADDLATRVKGIGTK 74


>gi|83815721|ref|YP_445801.1| phosphotransferase domain-containing protein [Salinibacter ruber
           DSM 13855]
 gi|83757115|gb|ABC45228.1| PHP domain protein [Salinibacter ruber DSM 13855]
          Length = 576

 Score = 41.9 bits (97), Expect = 0.61,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS+YS  +GA +L  +             I D 
Sbjct: 339 LHNHSTYS--DGAHTLREMALAARDRGYSYFGICDH 372


>gi|282162979|ref|YP_003355364.1| putative phosphatase, PHP family [Methanocella paludicola SANAE]
 gi|282155293|dbj|BAI60381.1| putative phosphatase, PHP family [Methanocella paludicola SANAE]
          Length = 289

 Score = 41.9 bits (97), Expect = 0.61,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F+   VH+S+S  +G      ++   A+     ++ITD + + +     + A +AGI+ I
Sbjct: 2  FIDTHVHTSHS--DGLHPEAQVIRDAASAGISLLSITDHDCVDAYPAALKLAKSAGIRLI 59

Query: 71 IGCQLDIDMQ 80
           G ++    +
Sbjct: 60 PGVEMTTKNE 69


>gi|254425001|ref|ZP_05038719.1| hypothetical protein S7335_5164 [Synechococcus sp. PCC 7335]
 gi|196192490|gb|EDX87454.1| hypothetical protein S7335_5164 [Synechococcus sp. PCC 7335]
          Length = 204

 Score = 41.9 bits (97), Expect = 0.61,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 11/80 (13%)

Query: 17 HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
          H+  S  +G L+ + ++++        IAITD +     ++   +A A      +     
Sbjct: 2  HTYCS--DGKLAPSELMEQAVKIGLRGIAITDHHT----IKGYSQAKAW-----MEDWRW 50

Query: 77 IDMQDNLKMTNQGKTPFPTV 96
           +     +    G    P V
Sbjct: 51 HNPSPWRRNPKPGAKNLPKV 70


>gi|312796990|ref|YP_004029912.1| DNA polymerase III alpha subunit [Burkholderia rhizoxinica HKI 454]
 gi|312168765|emb|CBW75768.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia
           rhizoxinica HKI 454]
          Length = 78

 Score = 41.9 bits (97), Expect = 0.62,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 582 LQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
           ++++L  +A QRG    L  IP +D  TY +++   T+G+FQ+ES  
Sbjct: 15  VRRALALVAHQRGEPFGLPDIPAEDTATYEMISRADTVGVFQIESRA 61


>gi|289644751|ref|ZP_06476809.1| PHP domain protein [Frankia symbiont of Datisca glomerata]
 gi|289505447|gb|EFD26488.1| PHP domain protein [Frankia symbiont of Datisca glomerata]
          Length = 307

 Score = 41.9 bits (97), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS  S  +GAL    I  +        +AITD 
Sbjct: 17 LHTHSDRS--DGALPPAEIGRRYREAGYDFLAITDH 50


>gi|170759893|ref|YP_001788930.1| putative phosphoesterase [Clostridium botulinum A3 str. Loch
          Maree]
 gi|169406882|gb|ACA55293.1| PHP domain protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 225

 Score = 41.9 bits (97), Expect = 0.62,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 15 QVH-SSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +H S YS L+  +SL  I+ +        + ITD 
Sbjct: 6  HIHESKYS-LDSEISLEEIVKRGNEIGLDGVCITDH 40


>gi|260438459|ref|ZP_05792275.1| histidinol-phosphatase [Butyrivibrio crossotus DSM 2876]
 gi|292809048|gb|EFF68253.1| histidinol-phosphatase [Butyrivibrio crossotus DSM 2876]
          Length = 268

 Score = 41.9 bits (97), Expect = 0.63,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           VH+ +S  +       ++ K  +     I  TD 
Sbjct: 6  HVHTKFSS-DCNSEPEELIKKAISLGMNEICFTDH 39


>gi|256789652|ref|ZP_05528083.1| hypothetical protein SlivT_34653 [Streptomyces lividans TK24]
          Length = 372

 Score = 41.9 bits (97), Expect = 0.63,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +HS +S  +G   +  +    AA      A+TD 
Sbjct: 131 HLHSDWS--DGGSPIEEMGRTAAALGHEWAALTDH 163


>gi|86559624|ref|YP_473444.1| putative metal-dependent phosphoesterase [Clostridium
          perfringens]
 gi|168206638|ref|ZP_02632643.1| putative metal-dependent phosphoesterase [Clostridium perfringens
          E str. JGS1987]
 gi|86475896|dbj|BAE79071.1| putative metal-dependent phosphoesterase [Clostridium
          perfringens]
 gi|170661910|gb|EDT14593.1| putative metal-dependent phosphoesterase [Clostridium perfringens
          E str. JGS1987]
          Length = 382

 Score = 41.9 bits (97), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L +HS+YS  +G  +L  IL   +  +   I+ITD +++
Sbjct: 36 LHIHSNYS-CDGMQTLKQILMFASEKKLDVISITDHDSI 73


>gi|312137229|ref|YP_004004566.1| hypothetical protein Mfer_1009 [Methanothermus fervidus DSM 2088]
 gi|311224948|gb|ADP77804.1| Protein of unknown function DUF655 [Methanothermus fervidus DSM
           2088]
          Length = 201

 Score = 41.9 bits (97), Expect = 0.63,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           L  + G+G      I++A   +PF S ED   RV S     ++L   + 
Sbjct: 118 LELLPGIGKKYMWEIIKAREKEPFKSFEDIKKRVPSLSDPVKILVKRIL 166


>gi|294507701|ref|YP_003571759.1| DNA polymerase IV (family X) [Salinibacter ruber M8]
 gi|294344029|emb|CBH24807.1| DNA polymerase IV (family X) [Salinibacter ruber M8]
          Length = 584

 Score = 41.9 bits (97), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS+YS  +GA +L  +             I D 
Sbjct: 347 LHNHSTYS--DGAHTLREMALAARDRGYSYFGICDH 380


>gi|229819561|ref|YP_002881087.1| PHP domain protein [Beutenbergia cavernae DSM 12333]
 gi|229565474|gb|ACQ79325.1| PHP domain protein [Beutenbergia cavernae DSM 12333]
          Length = 339

 Score = 41.9 bits (97), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH+S S  +G   L  +        +  IAITD 
Sbjct: 105 LHVHTSES--DGGSPLGEMAGVARRLGREYIAITDH 138


>gi|260893333|ref|YP_003239430.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Ammonifex degensii KC4]
 gi|260865474|gb|ACX52580.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Ammonifex degensii KC4]
          Length = 194

 Score = 41.9 bits (97), Expect = 0.64,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCS 870
           +L  + G+G T AR I+E  A + PF S+ED   
Sbjct: 142 ALQTLPGIGPTLARRIVEYRAKNGPFTSVEDLAK 175


>gi|229515558|ref|ZP_04405017.1| hypothetical protein VCB_003216 [Vibrio cholerae TMA 21]
 gi|229347327|gb|EEO12287.1| hypothetical protein VCB_003216 [Vibrio cholerae TMA 21]
          Length = 320

 Score = 41.9 bits (97), Expect = 0.64,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++D+  + +   +AITD + + +              +Q + 
Sbjct: 35 LHSHTNAS--DGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIAQQLYPLQLVN 92


>gi|302384905|ref|YP_003820727.1| histidinol phosphate phosphatase HisJ family [Clostridium
          saccharolyticum WM1]
 gi|302195533|gb|ADL03104.1| histidinol phosphate phosphatase HisJ family [Clostridium
          saccharolyticum WM1]
          Length = 261

 Score = 41.9 bits (97), Expect = 0.64,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           VH+ YS  +   S+  I+ +        IA+TD 
Sbjct: 6  HVHTYYSD-DSECSMEEIIQRAILLGFHEIAVTDH 39


>gi|313673583|ref|YP_004051694.1| glycosyl transferase group 1 [Calditerrivibrio nitroreducens DSM
          19672]
 gi|312940339|gb|ADR19531.1| glycosyl transferase group 1 [Calditerrivibrio nitroreducens DSM
          19672]
          Length = 777

 Score = 41.9 bits (97), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 14 LQVHSSYS------LLE--GALS----LNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          L VHS YS       L   GA         +  K+       + ITD N +   L+  +K
Sbjct: 6  LHVHSKYSRKPSEWFLRKIGAAESYTEPETLYFKLKDRGMDLVTITDHNTIKGCLKLKEK 65


>gi|296159004|ref|ZP_06841832.1| PHP domain protein [Burkholderia sp. Ch1-1]
 gi|295890879|gb|EFG70669.1| PHP domain protein [Burkholderia sp. Ch1-1]
          Length = 276

 Score = 41.9 bits (97), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  +  ++  +  A      A+TD + L    E    A A G+  + G 
Sbjct: 5   LHCHSTVS--DGQFAPADVARRAHAGGVTLWALTDHDELGGQREAKSTAEALGMAYLSGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           ++ +                 +   I  L  T  G
Sbjct: 63  EISVTWASRTVHIVGLGIDPTSSVLIDGLARTRNG 97


>gi|288560266|ref|YP_003423752.1| PHP domain-containing protein [Methanobrevibacter ruminantium M1]
 gi|288542976|gb|ADC46860.1| PHP domain-containing protein [Methanobrevibacter ruminantium M1]
          Length = 214

 Score = 41.9 bits (97), Expect = 0.65,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 17 HSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          HS +S  +G L  + +  +       AIAITD 
Sbjct: 2  HSLFS--DGELLPSELARRALVLGHEAIAITDH 32


>gi|253826950|ref|ZP_04869835.1| hypothetical protein HCAN_0297 [Helicobacter canadensis MIT
           98-5491]
 gi|253510356|gb|EES89015.1| hypothetical protein HCAN_0297 [Helicobacter canadensis MIT
           98-5491]
          Length = 82

 Score = 41.9 bits (97), Expect = 0.65,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDF 868
           L +IKG+G   A+ I++     PF S++D 
Sbjct: 28  LMSIKGIGEAKAQAIIDYREKTPFKSIDDL 57


>gi|218133632|ref|ZP_03462436.1| hypothetical protein BACPEC_01501 [Bacteroides pectinophilus ATCC
          43243]
 gi|217991007|gb|EEC57013.1| hypothetical protein BACPEC_01501 [Bacteroides pectinophilus ATCC
          43243]
          Length = 271

 Score = 41.9 bits (97), Expect = 0.65,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 15/37 (40%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            H+    L+   ++   + ++       + ITD N+
Sbjct: 6  HCHTKEGSLDAFATMEEYVSRLMELGYDGMMITDHNS 42


>gi|154151849|ref|YP_001405467.1| hypothetical protein Mboo_2310 [Candidatus Methanoregula boonei
          6A8]
 gi|154000401|gb|ABS56824.1| PHP C-terminal domain protein [Methanoregula boonei 6A8]
          Length = 217

 Score = 41.9 bits (97), Expect = 0.65,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNLFSALEFS----QKACAAG 66
          L  H+  S  +G +    ++ ++A      +AITD    +N  S ++      + A   G
Sbjct: 7  LHTHTILS--DGEMLPTELVRRMAVIGYTTVAITDHVDTSNAVSVVKTLLDVQESARLFG 64

Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTP 92
          ++ + G ++       +    +    
Sbjct: 65 VRLLCGVEITHVPPSQIAAVARQARD 90


>gi|52548908|gb|AAU82757.1| DNA-directed DNA polymerase, subunit 1 [uncultured archaeon
            GZfos19C8]
          Length = 492

 Score = 41.9 bits (97), Expect = 0.65,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 4/56 (7%)

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            R++                + +  MV S    KT KG+    V   +P+       
Sbjct: 127  RRISCGQIRYIKDRREKEEVSIVGMVSSIN--KTAKGNT--RVDLEDPSGNMSVIL 178


>gi|297154346|gb|ADI04058.1| PHP domain protein [Streptomyces bingchenggensis BCW-1]
          Length = 580

 Score = 41.9 bits (97), Expect = 0.66,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H++  L +G   L  ++           A+TD 
Sbjct: 342 LHTHTN--LTDGLEPLEEMIAAARRRGYAYYAVTDH 375


>gi|186682939|ref|YP_001866135.1| phospholipase D/transphosphatidylase [Nostoc punctiforme PCC 73102]
 gi|186465391|gb|ACC81192.1| phospholipase D/Transphosphatidylase [Nostoc punctiforme PCC 73102]
          Length = 186

 Score = 41.9 bits (97), Expect = 0.66,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 12/104 (11%)

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP------CVDFKVGDNR 834
            HY  EF      ++      I++     +    Q   P + +        +     +  
Sbjct: 78  AHYVREFARLYAKVKPGLPPAIQE-----KVKLEQTRCPQIKSSSSSELQAIKQININIA 132

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
               L  + GVG   A+ I+ +   + F SL+D   RV   K  
Sbjct: 133 SLPELETLPGVGKKLAQRIILSRQQQKFTSLQDL-ERVPGVKAK 175


>gi|21219312|ref|NP_625091.1| hypothetical protein SCO0789 [Streptomyces coelicolor A3(2)]
 gi|11071281|emb|CAC14354.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
          Length = 372

 Score = 41.9 bits (97), Expect = 0.66,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +HS +S  +G   +  +    AA      A+TD 
Sbjct: 131 HLHSDWS--DGGSPIEEMGRTAAALGHEWAALTDH 163


>gi|254412599|ref|ZP_05026372.1| Phospholipase D active site motif domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180334|gb|EDX75325.1| Phospholipase D active site motif domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 542

 Score = 41.9 bits (97), Expect = 0.66,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
           L  + G+G   A  I+ A + KPF SL D   
Sbjct: 493 LETLPGIGPKLAERIITARSQKPFTSLADLDR 524


>gi|160900160|ref|YP_001565742.1| hypothetical protein Daci_4728 [Delftia acidovorans SPH-1]
 gi|160365744|gb|ABX37357.1| conserved hypothetical protein [Delftia acidovorans SPH-1]
          Length = 136

 Score = 41.9 bits (97), Expect = 0.67,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
           L +IKG+G   +  I+E      F    DF +RV    
Sbjct: 32  LTSIKGIGPAMSARILEERKSSAFKDWPDFIARVKGVG 69


>gi|148657441|ref|YP_001277646.1| phosphotransferase domain-containing protein [Roseiflexus sp.
          RS-1]
 gi|148569551|gb|ABQ91696.1| PHP C-terminal domain protein [Roseiflexus sp. RS-1]
          Length = 300

 Score = 41.9 bits (97), Expect = 0.67,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS+ S  +G L    ++    A     +A+TD 
Sbjct: 17 LHTHSNRS--DGELPPEEVIAAYRAQGYDFLALTDH 50


>gi|312144588|ref|YP_003996034.1| histidinol phosphate phosphatase HisJ family [Halanaerobium sp.
          'sapolanicus']
 gi|311905239|gb|ADQ15680.1| histidinol phosphate phosphatase HisJ family [Halanaerobium sp.
          'sapolanicus']
          Length = 274

 Score = 41.5 bits (96), Expect = 0.68,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           +HS +S  +  +++  I++         IAITD +
Sbjct: 6  HMHSHFSA-DSQMNMEEIIETAIKIGLDEIAITDHH 40


>gi|284051986|ref|ZP_06382196.1| phosphotransferase domain-containing protein [Arthrospira
          platensis str. Paraca]
 gi|291570487|dbj|BAI92759.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 253

 Score = 41.5 bits (96), Expect = 0.68,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            H++ S  +G L    ++ +  A     +AITD + 
Sbjct: 56 HAHTTKS--DGQLDPIALIQQAIAIGLKGLAITDHHT 90


>gi|284047184|ref|YP_003397524.1| PHP domain protein [Conexibacter woesei DSM 14684]
 gi|283951405|gb|ADB54149.1| PHP domain protein [Conexibacter woesei DSM 14684]
          Length = 299

 Score = 41.5 bits (96), Expect = 0.68,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          + K P+F  LQ HS +S  +G L   +++++ AA     +A++D + +    E       
Sbjct: 1  MTK-PTF-DLQSHSLHS--DGVLPAADVVERAAAAGVELLALSDHDTVDGVDEALAAGAR 56

Query: 65 AGI 67
           G+
Sbjct: 57 HGV 59


>gi|227827615|ref|YP_002829395.1| PHP domain protein [Sulfolobus islandicus M.14.25]
 gi|229584819|ref|YP_002843321.1| PHP domain protein [Sulfolobus islandicus M.16.27]
 gi|238619772|ref|YP_002914598.1| PHP domain protein [Sulfolobus islandicus M.16.4]
 gi|227459411|gb|ACP38097.1| PHP domain protein [Sulfolobus islandicus M.14.25]
 gi|228019869|gb|ACP55276.1| PHP domain protein [Sulfolobus islandicus M.16.27]
 gi|238380842|gb|ACR41930.1| PHP domain protein [Sulfolobus islandicus M.16.4]
 gi|323477399|gb|ADX82637.1| PHP domain protein [Sulfolobus islandicus HVE10/4]
          Length = 219

 Score = 41.5 bits (96), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          F  L VHS YS  +G     +I+    A     +AITD + 
Sbjct: 2  FFDLHVHSRYS--DGKYFPKDIIAYARARNI-YVAITDHDT 39


>gi|209523566|ref|ZP_03272120.1| PHP domain protein [Arthrospira maxima CS-328]
 gi|209495971|gb|EDZ96272.1| PHP domain protein [Arthrospira maxima CS-328]
          Length = 253

 Score = 41.5 bits (96), Expect = 0.68,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            H++ S  +G L    ++ +  A     +AITD + 
Sbjct: 56 HAHTTKS--DGQLDPIALIQQAIAIGLKGLAITDHHT 90


>gi|227830303|ref|YP_002832083.1| PHP domain protein [Sulfolobus islandicus L.S.2.15]
 gi|229579128|ref|YP_002837526.1| PHP domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|229582131|ref|YP_002840530.1| PHP domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|284997725|ref|YP_003419492.1| PHP C-terminal domain protein [Sulfolobus islandicus L.D.8.5]
 gi|227456751|gb|ACP35438.1| PHP domain protein [Sulfolobus islandicus L.S.2.15]
 gi|228009842|gb|ACP45604.1| PHP domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|228012847|gb|ACP48608.1| PHP domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|284445620|gb|ADB87122.1| PHP C-terminal domain protein [Sulfolobus islandicus L.D.8.5]
          Length = 219

 Score = 41.5 bits (96), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          F  L VHS YS  +G     +I+    A     +AITD + 
Sbjct: 2  FFDLHVHSRYS--DGKYFPKDIIAYARARNI-YVAITDHDT 39


>gi|317499052|ref|ZP_07957333.1| PHP domain-containing protein [Lachnospiraceae bacterium
          5_1_63FAA]
 gi|316893702|gb|EFV15903.1| PHP domain-containing protein [Lachnospiraceae bacterium
          5_1_63FAA]
          Length = 275

 Score = 41.5 bits (96), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +G  +   I+ K+ A      ++TD + +    E         ++ I G 
Sbjct: 4  LHIHSTCS--DGTFTPKQIVQKVIAKGLYGFSLTDHDTVDGIPEILAIDLPDDLKFIPGI 61

Query: 74 QLDIDMQDN 82
          ++  D    
Sbjct: 62 EISCDALHR 70


>gi|253731755|ref|ZP_04865920.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253724484|gb|EES93213.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
          Length = 428

 Score = 41.5 bits (96), Expect = 0.69,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 195 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 227


>gi|288869627|ref|ZP_05975320.2| putative PHP domain protein [Methanobrevibacter smithii DSM 2374]
 gi|288860686|gb|EFC92984.1| putative PHP domain protein [Methanobrevibacter smithii DSM 2374]
          Length = 225

 Score = 41.5 bits (96), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
           +H  YS  + +  +++I+ K   D+   IAI+D N +  +    +K  
Sbjct: 13 HIHCQYSP-DSSTKIDDIIKKSIEDKIDIIAISDHNTVEGSKVAVEKTK 60


>gi|189347227|ref|YP_001943756.1| PHP domain protein [Chlorobium limicola DSM 245]
 gi|189341374|gb|ACD90777.1| PHP domain protein [Chlorobium limicola DSM 245]
          Length = 286

 Score = 41.5 bits (96), Expect = 0.69,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G L+  +I+ + AA    AI+ITD +++    +    A   G++ I G 
Sbjct: 18 LHIHTKCS--DGILTPEDIVARAAASGLAAISITDHDSVEGIDKAKPLALEKGLELIPGA 75

Query: 74 QLDIDMQ 80
          ++    +
Sbjct: 76 EMSSTYK 82


>gi|256393553|ref|YP_003115117.1| PHP domain-containing protein [Catenulispora acidiphila DSM 44928]
 gi|256359779|gb|ACU73276.1| PHP domain protein [Catenulispora acidiphila DSM 44928]
          Length = 579

 Score = 41.5 bits (96), Expect = 0.69,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H+   L +G   L  +L   A       A+TD 
Sbjct: 342 LHTHTD--LTDGLAPLEVMLQTAADLGYAYYAVTDH 375


>gi|225405640|ref|ZP_03760829.1| hypothetical protein CLOSTASPAR_04861 [Clostridium asparagiforme
          DSM 15981]
 gi|225042834|gb|EEG53080.1| hypothetical protein CLOSTASPAR_04861 [Clostridium asparagiforme
          DSM 15981]
          Length = 242

 Score = 41.5 bits (96), Expect = 0.69,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 14 LQVHSSYSLL-EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          L VHS  S   +  ++  NI    A     A+A+TD N   +   F   A   G+  + G
Sbjct: 8  LHVHSCLSPCGDDDMTPANIAGMAALKGLDAVALTDHNTCRNCPAFLAAAEEYGVLAVPG 67

Query: 73 CQLDIDMQ 80
           +++   +
Sbjct: 68 MEINTSEE 75


>gi|218264190|ref|ZP_03478074.1| hypothetical protein PRABACTJOHN_03764 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222236|gb|EEC94886.1| hypothetical protein PRABACTJOHN_03764 [Parabacteroides johnsonii
           DSM 18315]
          Length = 404

 Score = 41.5 bits (96), Expect = 0.69,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           F     H++YS  +G   ++ +        +  + I+D 
Sbjct: 174 FGSFHNHTNYS--DGRCKISELRKLAIECGREYVGISDH 210


>gi|254252920|ref|ZP_04946238.1| Helix-turn-helix protein [Burkholderia dolosa AUO158]
 gi|124895529|gb|EAY69409.1| Helix-turn-helix protein [Burkholderia dolosa AUO158]
          Length = 115

 Score = 41.5 bits (96), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
                   +     +L  IKG+G   A+ I++   A  PF + +D  SRV     +
Sbjct: 17  SAWAAVDVNTANEDALVGIKGIGPARAKAILDERGARGPFKNADDLASRVKGMGGH 72


>gi|326774789|ref|ZP_08234054.1| PHP domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|326655122|gb|EGE39968.1| PHP domain protein [Streptomyces cf. griseus XylebKG-1]
          Length = 334

 Score = 41.5 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +HS +S  +G   +  +    A       A+TD 
Sbjct: 104 HLHSDWS--DGGSPIEEMGRTAAELGHAWAALTDH 136


>gi|182434276|ref|YP_001821995.1| hypothetical protein SGR_483 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178462792|dbj|BAG17312.1| putative DNA polymerase beta chain [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 334

 Score = 41.5 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +HS +S  +G   +  +    A       A+TD 
Sbjct: 104 HLHSDWS--DGGSPIEEMGRTAAELGHAWAALTDH 136


>gi|27366332|ref|NP_761860.1| putative metal-dependent phosphoesterase [Vibrio vulnificus
          CMCP6]
 gi|27362533|gb|AAO11387.1| predicted metal-dependent phosphoesterase [Vibrio vulnificus
          CMCP6]
          Length = 293

 Score = 41.5 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  S   ++++        +A+TD + + +   +          I+ I 
Sbjct: 5  LHSHTTAS--DGRFSPQELIERALTFDLDVLAVTDHDTVEALAEIHRYVDEKQLPIKIIN 62


>gi|78065639|ref|YP_368408.1| DNA-binding protein [Burkholderia sp. 383]
 gi|77966384|gb|ABB07764.1| DNA-binding protein [Burkholderia sp. 383]
          Length = 113

 Score = 41.5 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
                   +     +L  IKG+G   A+ I++   A  PF + +D  SRV     +
Sbjct: 17  SAWAAVDVNTANEDALVGIKGIGPARAKAILDERGARGPFRNADDLASRVKGMGGH 72


>gi|322371361|ref|ZP_08045912.1| histidinol phosphate phosphatase HisJ family protein
          [Haladaptatus paucihalophilus DX253]
 gi|320549059|gb|EFW90722.1| histidinol phosphate phosphatase HisJ family protein
          [Haladaptatus paucihalophilus DX253]
          Length = 259

 Score = 41.5 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
            HS+YS  +G   L+ ++          I +TD   +
Sbjct: 5  HTHSNYS--DGTF-LSRMVRAAEEVGLDGIGVTDHCTV 39


>gi|206561278|ref|YP_002232043.1| hypothetical protein BCAL2943 [Burkholderia cenocepacia J2315]
 gi|198037320|emb|CAR53244.1| putative exported protein [Burkholderia cenocepacia J2315]
          Length = 115

 Score = 41.5 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882
                   +     +L  IKG+G   A+ I++   A  PF + +D   RV  K +    +
Sbjct: 17  SAWAAVDVNTANEDALVGIKGIGPARAKAILDERGARGPFRNADDLAKRV--KGMGGHTV 74

Query: 883 ESLVFAGA 890
           E L   G 
Sbjct: 75  ERLQQEGL 82


>gi|297268438|ref|XP_002799688.1| PREDICTED: DENN domain-containing protein 5A-like isoform 2 [Macaca
           mulatta]
          Length = 1242

 Score = 41.5 bits (96), Expect = 0.72,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 77/251 (30%), Gaps = 47/251 (18%)

Query: 778 WMKTHYPVEF--------LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV-NTPCVDF 828
           W K + P ++            + L+ D  EK   + Q+AR     I  P + N      
Sbjct: 688 WTKRNAPAQWRRKDRQKQHTEHLRLDNDQREK---YIQEARTMGSTIRQPKLSNLSPSVI 744

Query: 829 KVGDNRIYYSL----------AAIKGVGTTTAR------HIMEASADKPFDSLEDFCSRV 872
              + +    L            ++ +G           +I     +    SL D   R+
Sbjct: 745 AQTNWKFVEGLLKECRNKTKRMLVEKMGREAVELGHGEVNITGVEENTLIASLCDLLERI 804

Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            S  L  +  +S +++  L  +  +R + L S            + R +   ++    + 
Sbjct: 805 WSHGLQVKQGKSALWSHLL-HYQDNRQRKLTSGSLSMSGILLDSERRKSDASSLMPPLRI 863

Query: 933 TFSDKITL--------EKFSVENSSVRFENEQRVLGFYFSGH---PLDVYK---PILRKM 978
           +    +                 + VR   E+++L    S H    L  ++    + ++ 
Sbjct: 864 SLIQDMRHIQNIGEIKTDVGKARAWVRLSMEKKLL----SRHLKQLLSDHELTKKLYKRY 919

Query: 979 GIKGYEESVAT 989
                ++    
Sbjct: 920 AFLRCDDEKEQ 930


>gi|297268436|ref|XP_002799687.1| PREDICTED: DENN domain-containing protein 5A-like isoform 1 [Macaca
           mulatta]
          Length = 1288

 Score = 41.5 bits (96), Expect = 0.72,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 77/251 (30%), Gaps = 47/251 (18%)

Query: 778 WMKTHYPVEF--------LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV-NTPCVDF 828
           W K + P ++            + L+ D  EK   + Q+AR     I  P + N      
Sbjct: 688 WTKRNAPAQWRRKDRQKQHTEHLRLDNDQREK---YIQEARTMGSTIRQPKLSNLSPSVI 744

Query: 829 KVGDNRIYYSL----------AAIKGVGTTTAR------HIMEASADKPFDSLEDFCSRV 872
              + +    L            ++ +G           +I     +    SL D   R+
Sbjct: 745 AQTNWKFVEGLLKECRNKTKRMLVEKMGREAVELGHGEVNITGVEENTLIASLCDLLERI 804

Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            S  L  +  +S +++  L  +  +R + L S            + R +   ++    + 
Sbjct: 805 WSHGLQVKQGKSALWSHLL-HYQDNRQRKLTSGSLSMSGILLDSERRKSDASSLMPPLRI 863

Query: 933 TFSDKITL--------EKFSVENSSVRFENEQRVLGFYFSGH---PLDVYK---PILRKM 978
           +    +                 + VR   E+++L    S H    L  ++    + ++ 
Sbjct: 864 SLIQDMRHIQNIGEIKTDVGKARAWVRLSMEKKLL----SRHLKQLLSDHELTKKLYKRY 919

Query: 979 GIKGYEESVAT 989
                ++    
Sbjct: 920 AFLRCDDEKEQ 930


>gi|296137202|ref|YP_003644444.1| General secretion pathway protein K [Thiomonas intermedia K12]
 gi|295797324|gb|ADG32114.1| General secretion pathway protein K [Thiomonas intermedia K12]
          Length = 324

 Score = 41.5 bits (96), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
           LAA+ GV   TA+ ++EA     F +L D  + +         L S V  G  D     R
Sbjct: 224 LAAVLGVSADTAQALVEARKRAYFRNLGDISTLLPQGATINPQLVS-VATGYFDAIARVR 282

Query: 899 MQLLQSLDNIQ 909
           +  L+  +   
Sbjct: 283 IDKLEYAERAL 293


>gi|294341501|emb|CAZ89918.1| putative General secretion pathway protein K [Thiomonas sp. 3As]
          Length = 353

 Score = 41.5 bits (96), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
           LAA+ GV   TA+ ++EA     F +L D  + +         L S V  G  D     R
Sbjct: 253 LAAVLGVSADTAQALVEARKRAYFRNLGDISTLLPQGATINPQLVS-VATGYFDAIARVR 311

Query: 899 MQLLQSLDNIQ 909
           +  L+  +   
Sbjct: 312 IDKLEYAERAL 322


>gi|289773540|ref|ZP_06532918.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|289703739|gb|EFD71168.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 358

 Score = 41.5 bits (96), Expect = 0.73,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +HS +S  +G   +  +    AA      A+TD 
Sbjct: 117 HLHSDWS--DGGSPIEEMGRTAAALGHEWAALTDH 149


>gi|257063736|ref|YP_003143408.1| competence protein ComEA-like protein with helix-hairpin-helix
           repeat region [Slackia heliotrinireducens DSM 20476]
 gi|256791389|gb|ACV22059.1| competence protein ComEA-like protein with helix-hairpin-helix
           repeat region [Slackia heliotrinireducens DSM 20476]
          Length = 243

 Score = 41.5 bits (96), Expect = 0.73,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNR 879
           L  + G+G  TA  I++   A+ PF S+ED   RV      +
Sbjct: 193 LQQLSGIGPATAEAIVKDREANGPFASVEDL-QRVSGIGEKK 233


>gi|167569693|ref|ZP_02362567.1| hypothetical protein BoklC_07623 [Burkholderia oklahomensis C6786]
          Length = 202

 Score = 41.5 bits (96), Expect = 0.73,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++  A + PF   +D  +RV      
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRVKGLGTK 74


>gi|167562513|ref|ZP_02355429.1| hypothetical protein BoklE_08124 [Burkholderia oklahomensis EO147]
          Length = 202

 Score = 41.5 bits (96), Expect = 0.73,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++  A + PF   +D  +RV      
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRVKGLGTK 74


>gi|160916069|ref|ZP_02078276.1| hypothetical protein EUBDOL_02096 [Eubacterium dolichum DSM 3991]
 gi|158431793|gb|EDP10082.1| hypothetical protein EUBDOL_02096 [Eubacterium dolichum DSM 3991]
          Length = 485

 Score = 41.5 bits (96), Expect = 0.73,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 2   TQYLEKSPSF---VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
            + ++  P +   + L +HS +S   G  ++  +    A +    I+ITD +
Sbjct: 183 VRSVKPQPQYRSRIDLHLHSDFSA-NGEYNVEELFQLAAKNNMQTISITDLD 233


>gi|322421857|ref|YP_004201080.1| PHP domain-containing protein [Geobacter sp. M18]
 gi|320128244|gb|ADW15804.1| PHP domain protein [Geobacter sp. M18]
          Length = 286

 Score = 41.5 bits (96), Expect = 0.74,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 66/215 (30%), Gaps = 36/215 (16%)

Query: 15  QVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             H+     +YS      ++N + +  A      +AITD                 G+  
Sbjct: 56  HTHTLASGHAYS------TINELANAAAQAGLRGLAITDHG--------------PGLPG 95

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE--LVSRMYLLDQGKQ 127
                    M+      +  +       +I+       G   L +  L +  +++    +
Sbjct: 96  GPHRYHFCAMRFVPATISGVRIFRGIEANIL----DHTGRLDLEQDVLETLDFVMAGFHE 151

Query: 128 SVRICLSWLQEIGTEGLIM----LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
              IC    +      L +    L    S P +  F  N  +V    L T   L  +   
Sbjct: 152 DCGICGHDRERNTRTLLAVMENPLVKCISHPGNPIFPLNYEEVVMAALATDTALELNNSS 211

Query: 184 VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSL 218
           +     +G +    +++ +L      P++  +++ 
Sbjct: 212 LAAVSRKGSEGNC-TEIARLCAKIGAPVMIGSDAH 245


>gi|257051419|ref|YP_003129252.1| PHP domain protein [Halorhabdus utahensis DSM 12940]
 gi|256690182|gb|ACV10519.1| PHP domain protein [Halorhabdus utahensis DSM 12940]
          Length = 257

 Score = 41.5 bits (96), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           VH++YS  +G   L  ++D         +   D  N+F A E  Q    A
Sbjct: 5  HVHTTYS--DG-SFLPRMIDAAERAGLDGVGFADHCNVFDA-EADQAYREA 51


>gi|298491829|ref|YP_003722006.1| PHP domain-containing protein ['Nostoc azollae' 0708]
 gi|298233747|gb|ADI64883.1| PHP domain protein ['Nostoc azollae' 0708]
          Length = 229

 Score = 41.5 bits (96), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 8/52 (15%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          HL   SS    +G L  N ++++  +     +AITD +         Q A A
Sbjct: 35 HLHTVSS----DGRLQPNILMEQAISIGLKGLAITDHHGTGG----YQAASA 78


>gi|307151063|ref|YP_003886447.1| helix-hairpin-helix motif protein [Cyanothece sp. PCC 7822]
 gi|306981291|gb|ADN13172.1| helix-hairpin-helix motif protein [Cyanothece sp. PCC 7822]
          Length = 538

 Score = 41.5 bits (96), Expect = 0.74,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
           A  K  +   +  A + +     EKIKK  Q+   F+                  +    
Sbjct: 431 AHFKQEFERLYQNAILGIPTYVAEKIKKDQQNCSHFSSTTSQ----ASGGKLINLNTASL 486

Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
             L  + G+GT+ A+ I++   +KPF SLED   RV   +  +
Sbjct: 487 EELETLPGIGTSLAKKILKTRQEKPFTSLEDL-QRVPGIRQGK 528


>gi|149201117|ref|ZP_01878092.1| hypothetical protein RTM1035_15867 [Roseovarius sp. TM1035]
 gi|149145450|gb|EDM33476.1| hypothetical protein RTM1035_15867 [Roseovarius sp. TM1035]
          Length = 307

 Score = 41.5 bits (96), Expect = 0.74,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS+ S  +G L    +  + AA+    +A+TD 
Sbjct: 16 LHTHSTRS--DGVLPPEEVCRRYAAEGYDFMALTDH 49


>gi|148380559|ref|YP_001255100.1| hypothetical protein CBO2604 [Clostridium botulinum A str. ATCC
          3502]
 gi|148290043|emb|CAL84162.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
          3502]
          Length = 279

 Score = 41.5 bits (96), Expect = 0.74,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            H+S S  +G  S   ++     +    I+ITD +      E         I+ I 
Sbjct: 8  HTHTSAS--DGKYSSKELIYLAKKEGLDIISITDHDTTDGIEEALFYGKKLNIKVIP 62


>gi|222445539|ref|ZP_03608054.1| hypothetical protein METSMIALI_01179 [Methanobrevibacter smithii
          DSM 2375]
 gi|222435104|gb|EEE42269.1| hypothetical protein METSMIALI_01179 [Methanobrevibacter smithii
          DSM 2375]
          Length = 219

 Score = 41.5 bits (96), Expect = 0.74,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
           +H  YS  + +  +++I+ K   D+   IAI+D N +  +    +K  
Sbjct: 7  HIHCQYSP-DSSTKIDDIIKKSIEDKIDIIAISDHNTVEGSKVAVEKTK 54


>gi|302332751|gb|ADL22944.1| bifunctional DNA polymerase / phosphoesterase [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 570

 Score = 41.5 bits (96), Expect = 0.75,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H+++S  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTFS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|222151570|ref|YP_002560726.1| DNA-dependent DNA polymerase beta chain [Macrococcus caseolyticus
           JCSC5402]
 gi|222120695|dbj|BAH18030.1| DNA-dependent DNA polymerase beta chain [Macrococcus caseolyticus
           JCSC5402]
          Length = 569

 Score = 41.5 bits (96), Expect = 0.75,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA +L  +++   A     + ITD 
Sbjct: 340 HMHTTYS--DGAHTLEQMIEACIAKGYEYMMITDH 372


>gi|209519548|ref|ZP_03268341.1| Helix-hairpin-helix DNA-binding class 1 [Burkholderia sp. H160]
 gi|209500027|gb|EEA00090.1| Helix-hairpin-helix DNA-binding class 1 [Burkholderia sp. H160]
          Length = 189

 Score = 41.5 bits (96), Expect = 0.75,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   A+ I++  A + PF + +D  +RV      
Sbjct: 33  ALESVKGIGPVHAQAILDERAKNGPFKNADDLATRVKGLGQK 74


>gi|148643304|ref|YP_001273817.1| metal-dependent phosphoesterase [Methanobrevibacter smithii ATCC
          35061]
 gi|148552321|gb|ABQ87449.1| predicted metal-dependent phosphoesterase, PHP family
          [Methanobrevibacter smithii ATCC 35061]
          Length = 219

 Score = 41.5 bits (96), Expect = 0.75,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +H  YS  + +  +++I+ K   D+   IAI+D N +  +    +K   
Sbjct: 7  HIHCQYSP-DSSTKIDDIIKKSIEDKIDIIAISDHNTVEGSKVAVEKTKD 55


>gi|28212115|ref|NP_783059.1| putative DNA polymerase beta [Clostridium tetani E88]
 gi|28204558|gb|AAO36996.1| putative DNA polymerase beta [Clostridium tetani E88]
          Length = 253

 Score = 41.5 bits (96), Expect = 0.75,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
            H+ +S   G  ++ + +          IAITD  
Sbjct: 8  HTHTKFS--HGVGTIEDNIQIAIKKGLKTIAITDHG 41


>gi|163845682|ref|YP_001633726.1| phosphotransferase domain-containing protein [Chloroflexus
          aurantiacus J-10-fl]
 gi|222523388|ref|YP_002567858.1| PHP domain-containing protein [Chloroflexus sp. Y-400-fl]
 gi|163666971|gb|ABY33337.1| PHP domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447267|gb|ACM51533.1| PHP domain protein [Chloroflexus sp. Y-400-fl]
          Length = 357

 Score = 41.5 bits (96), Expect = 0.76,   Method: Composition-based stats.
 Identities = 7/42 (16%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL 56
           +H++YS  +G+ +  +++          + +TD + L    
Sbjct: 12 HMHTTYS--DGSATFPHLIAAAREAGLRWVIVTDHDTLEGLP 51


>gi|41615034|ref|NP_963532.1| DNA polymerase II small subunit [Nanoarchaeum equitans Kin4-M]
 gi|40068758|gb|AAR39093.1| NEQ240 [Nanoarchaeum equitans Kin4-M]
          Length = 526

 Score = 41.5 bits (96), Expect = 0.79,   Method: Composition-based stats.
 Identities = 8/67 (11%), Positives = 19/67 (28%), Gaps = 6/67 (8%)

Query: 968  LDVYKPILR-KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            LD YK +L+ ++        +       + +   V    ++          +   +    
Sbjct: 145  LDFYKRLLKGRLNPISIRNVLNLKENTEVSIIGRVFEIVKR-----DNYASLVLEDTTGR 199

Query: 1027 YEANFFP 1033
                 FP
Sbjct: 200  VIVKLFP 206


>gi|282916392|ref|ZP_06324154.1| hypothetical protein SATG_01227 [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770203|ref|ZP_06343095.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           subsp. aureus H19]
 gi|282319832|gb|EFB50180.1| hypothetical protein SATG_01227 [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460350|gb|EFC07440.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           subsp. aureus H19]
          Length = 570

 Score = 41.5 bits (96), Expect = 0.80,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H+++S  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTFS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|269797928|ref|YP_003311828.1| PHP domain protein [Veillonella parvula DSM 2008]
 gi|269094557|gb|ACZ24548.1| PHP domain protein [Veillonella parvula DSM 2008]
          Length = 275

 Score = 41.5 bits (96), Expect = 0.80,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACA--AGI 67
          V   +HS +S  +G  +  ++L          +A+TD + +    AL  +QK       I
Sbjct: 3  VDFHMHSIFS--DGVETPKDLLQHAIDCNVSMMALTDHDEIDGLQALRVAQKELDPNESI 60

Query: 68 QPIIGCQLDIDMQDN 82
          + + GC+   D +D 
Sbjct: 61 KIVNGCEFSADYKDK 75


>gi|167910603|ref|ZP_02497694.1| hypothetical protein Bpse112_08915 [Burkholderia pseudomallei 112]
          Length = 125

 Score = 41.5 bits (96), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++  A + PF   +D  +RV      
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRVKGLGAK 74


>gi|167823827|ref|ZP_02455298.1| hypothetical protein Bpseu9_09115 [Burkholderia pseudomallei 9]
          Length = 225

 Score = 41.5 bits (96), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++  A + PF   +D  +RV      
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRVKGLGAK 74


>gi|167815418|ref|ZP_02447098.1| hypothetical protein Bpse9_09754 [Burkholderia pseudomallei 91]
          Length = 129

 Score = 41.5 bits (96), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++  A + PF   +D  +RV      
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRVKGLGAK 74


>gi|167581673|ref|ZP_02374547.1| hypothetical protein BthaT_26249 [Burkholderia thailandensis TXDOH]
          Length = 202

 Score = 41.5 bits (96), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++  A + PF   +D  +RV      
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRVKGLGAK 74


>gi|161528890|ref|YP_001582716.1| hypothetical protein Nmar_1382 [Nitrosopumilus maritimus SCM1]
 gi|160340191|gb|ABX13278.1| Protein of unknown function DUF655 [Nitrosopumilus maritimus SCM1]
          Length = 188

 Score = 41.5 bits (96), Expect = 0.80,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             ++L  I G+G T  + ++E    K F+S ED   RV  K+  + + E ++     +  
Sbjct: 122 RIHALELIPGIGKTYMKTMLEEREKKLFESYEDLQERVGFKEPIKHITERIMD----EIT 177

Query: 895 GYSRMQLL 902
           G SRM L 
Sbjct: 178 GESRMNLF 185


>gi|134277120|ref|ZP_01763835.1| putative comE protein [Burkholderia pseudomallei 305]
 gi|134250770|gb|EBA50849.1| putative comE protein [Burkholderia pseudomallei 305]
          Length = 202

 Score = 41.5 bits (96), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++  A + PF   +D  +RV      
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRVKGLGAK 74


>gi|126439923|ref|YP_001059256.1| putative comE protein [Burkholderia pseudomallei 668]
 gi|254257971|ref|ZP_04949025.1| putative comE protein [Burkholderia pseudomallei 1710a]
 gi|254297400|ref|ZP_04964853.1| putative comE protein [Burkholderia pseudomallei 406e]
 gi|126219416|gb|ABN82922.1| putative comE protein [Burkholderia pseudomallei 668]
 gi|157807461|gb|EDO84631.1| putative comE protein [Burkholderia pseudomallei 406e]
 gi|254216660|gb|EET06044.1| putative comE protein [Burkholderia pseudomallei 1710a]
          Length = 231

 Score = 41.5 bits (96), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++  A + PF   +D  +RV      
Sbjct: 62  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRVKGLGAK 103


>gi|124383988|ref|YP_001026041.1| hypothetical protein BMA10229_A0032 [Burkholderia mallei NCTC
           10229]
 gi|124292008|gb|ABN01277.1| conserved domain protein [Burkholderia mallei NCTC 10229]
          Length = 231

 Score = 41.5 bits (96), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++  A + PF   +D  +RV      
Sbjct: 62  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRVKGLGAK 103


>gi|83720464|ref|YP_442728.1| hypothetical protein BTH_I2207 [Burkholderia thailandensis E264]
 gi|167619790|ref|ZP_02388421.1| hypothetical protein BthaB_26027 [Burkholderia thailandensis Bt4]
 gi|257138940|ref|ZP_05587202.1| hypothetical protein BthaA_06975 [Burkholderia thailandensis E264]
 gi|83654289|gb|ABC38352.1| hypothetical protein BTH_I2207 [Burkholderia thailandensis E264]
          Length = 199

 Score = 41.5 bits (96), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++  A + PF   +D  +RV      
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRVKGLGAK 74


>gi|53723602|ref|YP_103034.1| hypothetical protein BMA1375 [Burkholderia mallei ATCC 23344]
 gi|52427025|gb|AAU47618.1| conserved domain protein [Burkholderia mallei ATCC 23344]
          Length = 321

 Score = 41.5 bits (96), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++  A + PF   +D  +RV      
Sbjct: 152 ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRVKGLGAK 193


>gi|53719120|ref|YP_108106.1| hypothetical protein BPSL1486 [Burkholderia pseudomallei K96243]
 gi|254197933|ref|ZP_04904355.1| putative comE protein [Burkholderia pseudomallei S13]
 gi|52209534|emb|CAH35487.1| hypothetical protein BPSL1486 [Burkholderia pseudomallei K96243]
 gi|169654674|gb|EDS87367.1| putative comE protein [Burkholderia pseudomallei S13]
          Length = 231

 Score = 41.5 bits (96), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++  A + PF   +D  +RV      
Sbjct: 62  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRVKGLGAK 103


>gi|126452843|ref|YP_001066523.1| putative comE protein [Burkholderia pseudomallei 1106a]
 gi|167845368|ref|ZP_02470876.1| hypothetical protein BpseB_08773 [Burkholderia pseudomallei B7210]
 gi|167902364|ref|ZP_02489569.1| hypothetical protein BpseN_08842 [Burkholderia pseudomallei NCTC
           13177]
 gi|217421283|ref|ZP_03452787.1| putative comE protein [Burkholderia pseudomallei 576]
 gi|226197421|ref|ZP_03792998.1| putative comE protein [Burkholderia pseudomallei Pakistan 9]
 gi|237812579|ref|YP_002897030.1| hypothetical protein GBP346_A2329 [Burkholderia pseudomallei
           MSHR346]
 gi|242315540|ref|ZP_04814556.1| putative comE protein [Burkholderia pseudomallei 1106b]
 gi|254189088|ref|ZP_04895599.1| putative comE protein [Burkholderia pseudomallei Pasteur 52237]
 gi|126226485|gb|ABN90025.1| putative comE protein [Burkholderia pseudomallei 1106a]
 gi|157936767|gb|EDO92437.1| putative comE protein [Burkholderia pseudomallei Pasteur 52237]
 gi|217395025|gb|EEC35043.1| putative comE protein [Burkholderia pseudomallei 576]
 gi|225930800|gb|EEH26810.1| putative comE protein [Burkholderia pseudomallei Pakistan 9]
 gi|237503640|gb|ACQ95958.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346]
 gi|242138779|gb|EES25181.1| putative comE protein [Burkholderia pseudomallei 1106b]
          Length = 202

 Score = 41.5 bits (96), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++  A + PF   +D  +RV      
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRVKGLGAK 74


>gi|76811864|ref|YP_333782.1| hypothetical protein BURPS1710b_2387 [Burkholderia pseudomallei
           1710b]
 gi|167738228|ref|ZP_02411002.1| hypothetical protein Bpse14_09180 [Burkholderia pseudomallei 14]
 gi|167893912|ref|ZP_02481314.1| hypothetical protein Bpse7_09151 [Burkholderia pseudomallei 7894]
 gi|167918628|ref|ZP_02505719.1| hypothetical protein BpseBC_08740 [Burkholderia pseudomallei
           BCC215]
 gi|254179521|ref|ZP_04886120.1| putative comE protein [Burkholderia pseudomallei 1655]
 gi|76581317|gb|ABA50792.1| hypothetical protein BURPS1710b_2387 [Burkholderia pseudomallei
           1710b]
 gi|184210061|gb|EDU07104.1| putative comE protein [Burkholderia pseudomallei 1655]
          Length = 202

 Score = 41.5 bits (96), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++  A + PF   +D  +RV      
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRVKGLGAK 74


>gi|67639677|ref|ZP_00438517.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
 gi|121599878|ref|YP_993184.1| hypothetical protein BMASAVP1_A1865 [Burkholderia mallei SAVP1]
 gi|126450439|ref|YP_001080690.1| hypothetical protein BMA10247_1136 [Burkholderia mallei NCTC 10247]
 gi|167003459|ref|ZP_02269245.1| conserved domain protein [Burkholderia mallei PRL-20]
 gi|254177923|ref|ZP_04884578.1| conserved domain protein [Burkholderia mallei ATCC 10399]
 gi|254199980|ref|ZP_04906346.1| conserved domain protein [Burkholderia mallei FMH]
 gi|254206313|ref|ZP_04912665.1| conserved domain protein [Burkholderia mallei JHU]
 gi|121228688|gb|ABM51206.1| conserved domain protein [Burkholderia mallei SAVP1]
 gi|126243309|gb|ABO06402.1| conserved domain protein [Burkholderia mallei NCTC 10247]
 gi|147749576|gb|EDK56650.1| conserved domain protein [Burkholderia mallei FMH]
 gi|147753756|gb|EDK60821.1| conserved domain protein [Burkholderia mallei JHU]
 gi|160698962|gb|EDP88932.1| conserved domain protein [Burkholderia mallei ATCC 10399]
 gi|238520266|gb|EEP83728.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
 gi|243061020|gb|EES43206.1| conserved domain protein [Burkholderia mallei PRL-20]
          Length = 202

 Score = 41.5 bits (96), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++  A + PF   +D  +RV      
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRVKGLGAK 74


>gi|325519566|gb|EGC98929.1| hypothetical protein B1M_39131 [Burkholderia sp. TJI49]
          Length = 203

 Score = 41.5 bits (96), Expect = 0.81,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++    + PF   +D  +RV      
Sbjct: 33  ALESVKGLGPVKSKAIIDERTKNGPFKDADDLANRVKGLGTK 74


>gi|283470353|emb|CAQ49564.1| DNA-dependent DNA polymerase beta chain [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 570

 Score = 41.5 bits (96), Expect = 0.81,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H+++S  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTFS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|282908433|ref|ZP_06316264.1| DNA polymerase beta [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282328098|gb|EFB58380.1| DNA polymerase beta [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 488

 Score = 41.5 bits (96), Expect = 0.81,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H+++S  +GA S+ ++++   A     + ITD 
Sbjct: 346 HMHTTFS--DGAFSIRDMVEANIAKGYKFMVITDH 378


>gi|257425194|ref|ZP_05601620.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257427857|ref|ZP_05604255.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257430492|ref|ZP_05606874.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433254|ref|ZP_05609612.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436093|ref|ZP_05612140.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus M876]
 gi|282903691|ref|ZP_06311579.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905460|ref|ZP_06313315.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282910718|ref|ZP_06318521.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282913918|ref|ZP_06321705.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus M899]
 gi|282923963|ref|ZP_06331639.1| hypothetical protein SARG_01504 [Staphylococcus aureus subsp.
           aureus C101]
 gi|283957886|ref|ZP_06375337.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293500953|ref|ZP_06666804.1| hypothetical protein SCAG_01483 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509910|ref|ZP_06668619.1| hypothetical protein SAZG_01811 [Staphylococcus aureus subsp.
           aureus M809]
 gi|293526497|ref|ZP_06671182.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295427630|ref|ZP_06820262.1| hypothetical protein SIAG_00150 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297591416|ref|ZP_06950054.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus MN8]
 gi|257272170|gb|EEV04302.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257274698|gb|EEV06185.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278620|gb|EEV09239.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281347|gb|EEV11484.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284375|gb|EEV14495.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313935|gb|EFB44327.1| hypothetical protein SARG_01504 [Staphylococcus aureus subsp.
           aureus C101]
 gi|282321986|gb|EFB52310.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325323|gb|EFB55632.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282330752|gb|EFB60266.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595309|gb|EFC00273.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790035|gb|EFC28852.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920569|gb|EFD97632.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095958|gb|EFE26219.1| hypothetical protein SCAG_01483 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467360|gb|EFF09877.1| hypothetical protein SAZG_01811 [Staphylococcus aureus subsp.
           aureus M809]
 gi|295127988|gb|EFG57622.1| hypothetical protein SIAG_00150 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576302|gb|EFH95018.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312438481|gb|ADQ77552.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315193813|gb|EFU24208.1| hypothetical protein CGSSa00_10424 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 570

 Score = 41.5 bits (96), Expect = 0.81,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H+++S  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTFS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|206560281|ref|YP_002231045.1| hypothetical protein BCAL1917 [Burkholderia cenocepacia J2315]
 gi|198036322|emb|CAR52218.1| putative exported protein [Burkholderia cenocepacia J2315]
          Length = 216

 Score = 41.5 bits (96), Expect = 0.81,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++    + PF   +D  +RV      
Sbjct: 47  ALESVKGLGPVKSKAIIDERTKNGPFKDADDLANRVKGLGTK 88


>gi|189219913|ref|YP_001941131.1| DNA polymerase IV fused to PHP phosphatase [Methylacidiphilum
           infernorum V4]
 gi|189186771|gb|ACD83956.1| DNA polymerase IV fused to PHP phosphatase [Methylacidiphilum
           infernorum V4]
          Length = 656

 Score = 41.5 bits (96), Expect = 0.81,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             H++ S  +G  SL  +           + I D 
Sbjct: 417 HCHTTES--DGRSSLEEMAKAAMDMGLEYLGIADH 449


>gi|170704037|ref|ZP_02894679.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
 gi|170131053|gb|EDS99738.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
          Length = 203

 Score = 41.5 bits (96), Expect = 0.81,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++    + PF   +D  +RV      
Sbjct: 33  ALESVKGLGPVKSKAIIDERTKNGPFKDADDLANRVKGLGTK 74


>gi|167587018|ref|ZP_02379406.1| hypothetical protein BuboB_16872 [Burkholderia ubonensis Bu]
          Length = 112

 Score = 41.5 bits (96), Expect = 0.81,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++    + PF   +D  +RV      
Sbjct: 33  ALESVKGLGPVKSKAIIDERTKNGPFKDADDLANRVKGLGTK 74


>gi|254248041|ref|ZP_04941362.1| DNA uptake protein [Burkholderia cenocepacia PC184]
 gi|124872817|gb|EAY64533.1| DNA uptake protein [Burkholderia cenocepacia PC184]
          Length = 167

 Score = 41.5 bits (96), Expect = 0.81,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++    + PF   +D  +RV      
Sbjct: 61  ALESVKGLGPVKSKAIIDERTKNGPFKDADDLANRVKGLGTK 102


>gi|170733205|ref|YP_001765152.1| hypothetical protein Bcenmc03_1869 [Burkholderia cenocepacia MC0-3]
 gi|169816447|gb|ACA91030.1| conserved hypothetical protein [Burkholderia cenocepacia MC0-3]
          Length = 203

 Score = 41.5 bits (96), Expect = 0.81,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++    + PF   +D  +RV      
Sbjct: 33  ALESVKGLGPVKSKAIIDERTKNGPFKDADDLANRVKGLGTK 74


>gi|107028976|ref|YP_626071.1| hypothetical protein Bcen_6234 [Burkholderia cenocepacia AU 1054]
 gi|116689866|ref|YP_835489.1| hypothetical protein Bcen2424_1845 [Burkholderia cenocepacia
           HI2424]
 gi|105898140|gb|ABF81098.1| conserved hypothetical protein [Burkholderia cenocepacia AU 1054]
 gi|116647955|gb|ABK08596.1| conserved hypothetical protein [Burkholderia cenocepacia HI2424]
          Length = 203

 Score = 41.5 bits (96), Expect = 0.81,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++    + PF   +D  +RV      
Sbjct: 33  ALESVKGLGPVKSKAIIDERTKNGPFKDADDLANRVKGLGTK 74


>gi|83951582|ref|ZP_00960314.1| hypothetical protein ISM_13505 [Roseovarius nubinhibens ISM]
 gi|83836588|gb|EAP75885.1| hypothetical protein ISM_13505 [Roseovarius nubinhibens ISM]
          Length = 309

 Score = 41.5 bits (96), Expect = 0.81,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS  S  +G L    +  +  A+    +A+TD 
Sbjct: 17 LHTHSDRS--DGVLPPEEVCRRYHAEGYDFLALTDH 50


>gi|299140056|ref|ZP_07033225.1| PHP domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298597902|gb|EFI54071.1| PHP domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 628

 Score = 41.5 bits (96), Expect = 0.82,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++ S  +G  S+  + +         IAITD 
Sbjct: 366 LHMHTTES--DGGNSIREMAEAAIGRGLEYIAITDH 399


>gi|73670680|ref|YP_306695.1| hypothetical protein Mbar_A3233 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397842|gb|AAZ72115.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 240

 Score = 41.5 bits (96), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 22/60 (36%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
           L  + G+G      I++      F S +D   R+ S     +VL   +     D F   R
Sbjct: 172 LDLLPGIGKKLMWSIIDERKKGDFKSFQDIRERIPSLHDPAKVLAHRIEDELKDDFIKYR 231


>gi|49483306|ref|YP_040530.1| hypothetical protein SAR1116 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49241435|emb|CAG40119.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
          Length = 570

 Score = 41.5 bits (96), Expect = 0.82,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H+++S  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTFS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|282918841|ref|ZP_06326576.1| hypothetical protein SASG_00147 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282316651|gb|EFB47025.1| hypothetical protein SASG_00147 [Staphylococcus aureus subsp.
           aureus C427]
          Length = 570

 Score = 41.5 bits (96), Expect = 0.83,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H+++S  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTFS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|260427278|ref|ZP_05781257.1| PHP C- domain protein [Citreicella sp. SE45]
 gi|260421770|gb|EEX15021.1| PHP C- domain protein [Citreicella sp. SE45]
          Length = 306

 Score = 41.5 bits (96), Expect = 0.83,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS+ S  +G L+   +  + AA+    +A+TD 
Sbjct: 17 LHTHSTLS--DGCLAPEEVCRRYAAEGYDFLALTDH 50


>gi|182436157|ref|YP_001823876.1| hypothetical protein SGR_2364 [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|326776783|ref|ZP_08236048.1| PHP domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|178464673|dbj|BAG19193.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
          13350]
 gi|326657116|gb|EGE41962.1| PHP domain protein [Streptomyces cf. griseus XylebKG-1]
          Length = 288

 Score = 41.5 bits (96), Expect = 0.83,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L  HS+ S  +G  +   ++   AA     +A+TD + +  
Sbjct: 5  LHTHSTAS--DGTDTPAELVANAAAAGLDVVALTDHDTVGG 43


>gi|219848084|ref|YP_002462517.1| PHP domain-containing protein [Chloroflexus aggregans DSM 9485]
 gi|219542343|gb|ACL24081.1| PHP domain protein [Chloroflexus aggregans DSM 9485]
          Length = 353

 Score = 41.5 bits (96), Expect = 0.83,   Method: Composition-based stats.
 Identities = 7/42 (16%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL 56
           +H++YS  +G+ +  +++          + +TD + L    
Sbjct: 12 HMHTTYS--DGSATFPHLIAAAREAGLRWVIVTDHDTLEGLP 51


>gi|95928240|ref|ZP_01310988.1| glycosyl transferase, group 1 [Desulfuromonas acetoxidans DSM
          684]
 gi|95135511|gb|EAT17162.1| glycosyl transferase, group 1 [Desulfuromonas acetoxidans DSM
          684]
          Length = 813

 Score = 41.5 bits (96), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 16/49 (32%), Gaps = 12/49 (24%)

Query: 14 LQVHSSYS------LLE--GALS----LNNILDKIAADQQPAIAITDTN 50
          L VHS YS       L+  GA         I           + ITD N
Sbjct: 6  LHVHSKYSNHPSEWFLQRLGASESYTEPETIYKLARQRGMDFVTITDHN 54


>gi|66805583|ref|XP_636513.1| hypothetical protein DDB_G0288779 [Dictyostelium discoideum AX4]
 gi|60464896|gb|EAL63011.1| hypothetical protein DDB_G0288779 [Dictyostelium discoideum AX4]
          Length = 493

 Score = 41.5 bits (96), Expect = 0.83,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 46/138 (33%), Gaps = 11/138 (7%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+ YS  +G+LS    +     +    + +TD N ++  L   + A       I+   
Sbjct: 147 HSHTYYS--DGSLSPEENIKWHILNGYNVMFMTDHNQVYGGLVGMKIAQEKYSDKILVIP 204

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV-SRMYLLDQGKQSV---- 129
                     +   G         ++   +  E  + LI+LV S+  L+           
Sbjct: 205 GIEWTNCRCHLNLIG---ITENVPLIKYPTDEE-IKNLIDLVHSKGGLVILNHYPWSSWS 260

Query: 130 RICLSWLQEIGTEGLIML 147
            +    +Q+    G+  L
Sbjct: 261 GLDQPSIQQWYDWGIDFL 278


>gi|325959164|ref|YP_004290630.1| PHP domain-containing protein [Methanobacterium sp. AL-21]
 gi|325330596|gb|ADZ09658.1| PHP domain protein [Methanobacterium sp. AL-21]
          Length = 569

 Score = 41.5 bits (96), Expect = 0.84,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           LQ+H+++S  +G  S+  +  K        IAITD 
Sbjct: 339 LQMHTNWS--DGKNSIEELAFKSQTMGYEYIAITDH 372


>gi|322497465|emb|CBZ32539.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 2167

 Score = 41.5 bits (96), Expect = 0.86,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 16/158 (10%)

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
              L  +     + +  VD   + I  D +    L+ + D   F E  +        +E++
Sbjct: 1811 TVLGKLCSYYYISHITVDLFNRNIEPDHSCGELLRLLCDAEEFNELPVRHNEDKLNMELA 1870

Query: 516  QKLEGLYRHA---STHAAGIVI-------GDRPLSQLVPMYRDVRSD-LPVTQFNMKWIE 564
            ++L    R A   S HA   ++          P++  +   +    + + V Q  +    
Sbjct: 1871 RQLPLPVRDAEADSPHAKAFLLFQALFERAPMPITDYITDQKSAMDNAVRVIQAMVDVAA 1930

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
              G +   +  L+ +TL+Q  +   A+      L  IP
Sbjct: 1931 NNGHL---YAALRCMTLMQCMVQ--ARWWDDNSLLQIP 1963


>gi|284121620|ref|ZP_06386816.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Candidatus Poribacteria sp. WGA-A3]
 gi|283829401|gb|EFC33789.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Candidatus Poribacteria sp. WGA-A3]
          Length = 106

 Score = 41.5 bits (96), Expect = 0.86,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           L  + G+G   A+ I+E   A+ PF S ED        K     ++  +  G
Sbjct: 46  LQQLPGIGKGLAKRIVEFRTANGPFKSAEDLMQVRGIGKKTFAKMKERITVG 97


>gi|153854943|ref|ZP_01996156.1| hypothetical protein DORLON_02162 [Dorea longicatena DSM 13814]
 gi|149752440|gb|EDM62371.1| hypothetical protein DORLON_02162 [Dorea longicatena DSM 13814]
          Length = 219

 Score = 41.5 bits (96), Expect = 0.86,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 11/91 (12%)

Query: 11 FVHLQVH----SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE-FSQKACAA 65
          FV   +H    S  S L     L  +++        AI ITD +++    E  ++ +   
Sbjct: 2  FVDTHMHEMTCSKDSFL----KLEEMVEIAREKGLGAICITDHDDM-GLKEYAAEYSKKT 56

Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTV 96
          G  PI        +Q ++      + P   +
Sbjct: 57 GF-PIFVGIEFFSLQGDIIAFGIEEYPDERI 86


>gi|146080734|ref|XP_001464070.1| RNA helicase [Leishmania infantum JPCM5]
 gi|134068160|emb|CAM66445.1| putative RNA helicase [Leishmania infantum JPCM5]
          Length = 2167

 Score = 41.5 bits (96), Expect = 0.86,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 16/158 (10%)

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
              L  +     + +  VD   + I  D +    L+ + D   F E  +        +E++
Sbjct: 1811 TVLGKLCSYYYISHITVDLFNRNIEPDHSCGELLRLLCDAEEFNELPVRHNEDKLNMELA 1870

Query: 516  QKLEGLYRHA---STHAAGIVI-------GDRPLSQLVPMYRDVRSD-LPVTQFNMKWIE 564
            ++L    R A   S HA   ++          P++  +   +    + + V Q  +    
Sbjct: 1871 RQLPLPVRDAEADSPHAKAFLLFQALFERAPMPITDYITDQKSAMDNAVRVIQAMVDVAA 1930

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
              G +   +  L+ +TL+Q  +   A+      L  IP
Sbjct: 1931 NNGHL---YAALRCMTLMQCMVQ--ARWWDDNSLLQIP 1963


>gi|257076451|ref|ZP_05570812.1| hypothetical protein Faci_05275 [Ferroplasma acidarmanus fer1]
          Length = 182

 Score = 41.5 bits (96), Expect = 0.86,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 26/54 (48%)

Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           N   ++L  + G+G  +   +++     PF S ED   RV S    ++++ + +
Sbjct: 112 NTRMHTLELLPGLGNKSMWSVLDERKKGPFKSFEDISERVKSVHNPKKMVVNRI 165


>gi|116625961|ref|YP_828117.1| phosphotransferase domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229123|gb|ABJ87832.1| PHP C-terminal domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 571

 Score = 41.5 bits (96), Expect = 0.86,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            L  HS+ S  +G  S+  +           I I+D 
Sbjct: 340 ELHAHSTSS--DGVHSIEQMAIAARERGYEYIGISDH 374


>gi|242398593|ref|YP_002994017.1| Predicted RNA-binding protein [Thermococcus sibiricus MM 739]
 gi|242264986|gb|ACS89668.1| Predicted RNA-binding protein [Thermococcus sibiricus MM 739]
          Length = 213

 Score = 41.5 bits (96), Expect = 0.87,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             +SL  + G+G      I+E    +PF S +D   RV       +++   +    LD  
Sbjct: 140 RLHSLELLPGIGKKHMWDILEERQREPFKSFDDLKHRVKGLADPVKMIAKRI----LDEL 195

Query: 895 G-YSRMQLL 902
               R +L 
Sbjct: 196 ENKDRYRLF 204


>gi|187250678|ref|YP_001875160.1| putative metal-dependent phosphoesterase [Elusimicrobium minutum
          Pei191]
 gi|186970838|gb|ACC97823.1| putative metal-dependent phosphoesterase [Elusimicrobium minutum
          Pei191]
          Length = 270

 Score = 41.5 bits (96), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS +S  +G    + ++           A+TD + +    +  +KA +  +  + G 
Sbjct: 6  LHTHSKFS--DGTSKPSEVVVAAVKKGVKLYALTDHDTIEGVPQAKEKAQSYKMNFVTGV 63

Query: 74 QLDIDMQDNL 83
          ++  +  ++L
Sbjct: 64 EISTNEDEHL 73


>gi|281357534|ref|ZP_06244022.1| PHP domain protein [Victivallis vadensis ATCC BAA-548]
 gi|281316137|gb|EFB00163.1| PHP domain protein [Victivallis vadensis ATCC BAA-548]
          Length = 285

 Score = 41.5 bits (96), Expect = 0.87,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
          S++ L  HS  S  +G+ +   +++   A    A A+TD + +    EF + A   
Sbjct: 2  SYIDLHTHSRCS--DGSCTPAELVELAVAAGLKAAALTDHDTVAGLAEFREAAARH 55


>gi|78066615|ref|YP_369384.1| hypothetical protein Bcep18194_A5146 [Burkholderia sp. 383]
 gi|77967360|gb|ABB08740.1| hypothetical protein Bcep18194_A5146 [Burkholderia sp. 383]
          Length = 207

 Score = 41.5 bits (96), Expect = 0.87,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           L ++KG+G   ++ I++    + PF   +D  +RV      
Sbjct: 34  LESVKGLGPVKSKAIIDERTKNGPFKDADDLANRVKGLGTK 74


>gi|312878136|ref|ZP_07738068.1| PHP domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795094|gb|EFR11491.1| PHP domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 242

 Score = 41.1 bits (95), Expect = 0.88,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          V    H++ S      +L  ++ +        I ITD  
Sbjct: 7  VETHCHTNAS-GHAYNTLEEMVLEAQRKGLKGICITDHG 44


>gi|313112629|ref|ZP_07798287.1| PHP domain protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310625052|gb|EFQ08349.1| PHP domain protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 306

 Score = 41.1 bits (95), Expect = 0.88,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L  HS+ S  +G++ ++ +    A      +AI+D + L
Sbjct: 26 LHNHSTCS--DGSVPIHRLPLMAARAGLDTMAISDHDTL 62


>gi|218961223|ref|YP_001740998.1| putative Histidinol-phosphatase [Candidatus Cloacamonas
          acidaminovorans]
 gi|167729880|emb|CAO80792.1| putative Histidinol-phosphatase [Candidatus Cloacamonas
          acidaminovorans]
          Length = 246

 Score = 41.1 bits (95), Expect = 0.88,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +H+  S  + ++   +++ +        IAIT+ 
Sbjct: 6  HIHTEDSY-DSSIKAIDLIKRAIELNYDEIAITEH 39


>gi|297619967|ref|YP_003708072.1| Protein of unknown function DUF655 [Methanococcus voltae A3]
 gi|297378944|gb|ADI37099.1| Protein of unknown function DUF655 [Methanococcus voltae A3]
          Length = 197

 Score = 41.1 bits (95), Expect = 0.88,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
             +SL  +  +G T    I+E    KPF+S +DF  RV   
Sbjct: 125 RLHSLQILPSIGKTAMWKIIEEREKKPFESFDDFEKRVHKH 165


>gi|225848610|ref|YP_002728773.1| hypothetical protein SULAZ_0793 [Sulfurihydrogenibium azorense
          Az-Fu1]
 gi|225643088|gb|ACN98138.1| conserved hypothetical protein [Sulfurihydrogenibium azorense
          Az-Fu1]
          Length = 353

 Score = 41.1 bits (95), Expect = 0.89,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
           VH+ +S  +     ++I   +  +    + ITD +N
Sbjct: 46 HVHTQFSF-DSLGKPSDIKKAMEENSIDFVFITDHDN 81


>gi|149927247|ref|ZP_01915503.1| putative secreted protein [Limnobacter sp. MED105]
 gi|149823961|gb|EDM83184.1| putative secreted protein [Limnobacter sp. MED105]
          Length = 413

 Score = 41.1 bits (95), Expect = 0.89,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 14  LQVHSSYSLLEGALSL-NNILDKIAADQQPAIAITDTNN 51
           L VH++YS  + +      ++     +    +A++D +N
Sbjct: 68  LHVHTNYS-TDASNRPMAEVISIAKNNGLNFLAVSDHDN 105


>gi|282857574|ref|ZP_06266799.1| PHP domain protein [Pyramidobacter piscolens W5455]
 gi|282584587|gb|EFB89930.1| PHP domain protein [Pyramidobacter piscolens W5455]
          Length = 216

 Score = 41.1 bits (95), Expect = 0.90,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 15 QVHS-SYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
           +H+  YS  +  L +   + +        + +TD + L  A E 
Sbjct: 6  HMHTAEYSP-DSFLPIAEAVARAREMGIGGLCVTDHDTL-GAREA 48


>gi|148266263|ref|YP_001232969.1| putative hydrolase [Geobacter uraniireducens Rf4]
 gi|146399763|gb|ABQ28396.1| PHP C-terminal domain protein [Geobacter uraniireducens Rf4]
          Length = 237

 Score = 41.1 bits (95), Expect = 0.90,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 20/58 (34%)

Query: 15 QVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN-NL--------FSALEF 58
            H+     +YS      ++N + D  A+    AIA+TD    L        F A+ F
Sbjct: 8  HTHTIASGHAYS------TVNELADAAASIGLKAIALTDHGPALPGGPHLYHFGAMRF 59


>gi|302391193|ref|YP_003827013.1| PHP domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302203270|gb|ADL11948.1| PHP domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 571

 Score = 41.1 bits (95), Expect = 0.91,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH+ +S  +G  ++  +           ++I D 
Sbjct: 341 LHVHTDWS--DGGNTIQEMALAARDRGYKFLSICDH 374


>gi|404603|gb|AAD10548.1| uncertain [Mycoplasma genitalium]
          Length = 94

 Score = 41.1 bits (95), Expect = 0.92,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 28/66 (42%)

Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
               +     + +K K   +   +  I+I PP +N    +  + + +IY  L  IKG+  
Sbjct: 1   YLWLLNHFQSSKDKQKLIIRTLEKSGIEIYPPLLNKAQPNSVIENKKIYLGLNLIKGIND 60

Query: 848 TTARHI 853
              +++
Sbjct: 61  RYIQNL 66


>gi|149706121|ref|XP_001501241.1| PREDICTED: similar to endonuclease/exonuclease/phosphatase family
           domain containing 1 [Equus caballus]
          Length = 569

 Score = 41.1 bits (95), Expect = 0.93,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 147 LMSVRGLTEKMAASIVDYRREHGPFRSVEDLVR 179


>gi|329766404|ref|ZP_08257950.1| hypothetical protein Nlim_1755 [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329137173|gb|EGG41463.1| hypothetical protein Nlim_1755 [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 188

 Score = 41.1 bits (95), Expect = 0.94,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             ++L  I G+G T  + ++E    K F S  D   RV  K+  R + E ++     +  
Sbjct: 122 RIHALELIPGIGKTYMKTMIEEREKKKFQSYADLQERVGFKEPIRHISERIMH----EIT 177

Query: 895 GYSRMQLL 902
           G SRM L 
Sbjct: 178 GESRMNLF 185


>gi|291614511|ref|YP_003524668.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Sideroxydans lithotrophicus ES-1]
 gi|291584623|gb|ADE12281.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Sideroxydans lithotrophicus ES-1]
          Length = 153

 Score = 41.1 bits (95), Expect = 0.94,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDF 868
           L A+KG+G   A+ I++    + PF S+ED 
Sbjct: 32  LDAVKGIGPAKAQAIIDYRTKNGPFASVEDL 62


>gi|300870380|ref|YP_003785251.1| histidinol-phosphatase-like protein [Brachyspira pilosicoli
           95/1000]
 gi|300688079|gb|ADK30750.1| histidinol-phosphatase-related protein [Brachyspira pilosicoli
           95/1000]
          Length = 273

 Score = 41.1 bits (95), Expect = 0.95,   Method: Composition-based stats.
 Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 2/93 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            VH+ +S  +    L  ++          I ITD    +   +   +        I    
Sbjct: 6   HVHTEFSD-DSNYPLEEVIKDAIKLNIDDICITDH-VDYGIKKDWDEIKIKEKNTITNVN 63

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
               ++D  K+  +          +   + T  
Sbjct: 64  YPKYIEDINKIKEKYSKQINIKTGLECGIQTHT 96


>gi|225175810|ref|ZP_03729803.1| PHP domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168734|gb|EEG77535.1| PHP domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 346

 Score = 41.1 bits (95), Expect = 0.95,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           +HSS+S  +GA S+  I  + +      I +TD +
Sbjct: 9  HIHSSHS--DGAQSIPEIAKEASQAGLDFIIVTDHD 42


>gi|62078909|ref|NP_001014110.1| endonuclease/exonuclease/phosphatase family domain-containing
           protein 1 [Rattus norvegicus]
 gi|81883711|sp|Q5XI74|EEPD1_RAT RecName: Full=Endonuclease/exonuclease/phosphatase family
           domain-containing protein 1
 gi|53733575|gb|AAH83816.1| Endonuclease/exonuclease/phosphatase family domain containing 1
           [Rattus norvegicus]
 gi|68533864|gb|AAH99214.1| Endonuclease/exonuclease/phosphatase family domain containing 1
           [Rattus norvegicus]
 gi|149027895|gb|EDL83355.1| similar to RIKEN cDNA 2310005P05 [Rattus norvegicus]
          Length = 569

 Score = 41.1 bits (95), Expect = 0.95,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 147 LMSVRGLSEKMAVSIVDYRREHGPFRSVEDLVR 179


>gi|259417166|ref|ZP_05741085.1| PHP C- domain protein [Silicibacter sp. TrichCH4B]
 gi|259346072|gb|EEW57886.1| PHP C- domain protein [Silicibacter sp. TrichCH4B]
          Length = 309

 Score = 41.1 bits (95), Expect = 0.95,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS  S  +GAL    +  +  A     I++TD 
Sbjct: 17 LHTHSDVS--DGALPPAEVCRRYKAQGYDFISLTDH 50


>gi|168699735|ref|ZP_02732012.1| DNA polymerase IV (family X) [Gemmata obscuriglobus UQM 2246]
          Length = 581

 Score = 41.1 bits (95), Expect = 0.95,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             H++YS  +G  SL ++             + D 
Sbjct: 347 HNHTTYS--DGVASLEDMALACKKLGWEYFGVADH 379


>gi|15894377|ref|NP_347726.1| metal-dependent phosphoesterase [Clostridium acetobutylicum ATCC
          824]
 gi|15024008|gb|AAK79066.1|AE007625_10 Predicted metal-dependent phosphoesterase (PHP family), YciV
          ortholog [Clostridium acetobutylicum ATCC 824]
 gi|325508505|gb|ADZ20141.1| metal-dependent phosphoesterase (PHP family) [Clostridium
          acetobutylicum EA 2018]
          Length = 274

 Score = 41.1 bits (95), Expect = 0.96,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           +H++ S  +G  +   +L+         +AITD +   S  +        GI+
Sbjct: 8  HIHTNAS--DGKYTPEKVLELAKTAGINILAITDHDTTSSVKKAIAVGNELGIK 59


>gi|186682905|ref|YP_001866101.1| hypothetical protein Npun_R2604 [Nostoc punctiforme PCC 73102]
 gi|186465357|gb|ACC81158.1| hypothetical protein Npun_R2604 [Nostoc punctiforme PCC 73102]
          Length = 173

 Score = 41.1 bits (95), Expect = 0.97,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 832 DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
           ++    ++AA++GV    A+ + E     PF SLED   RV   K  +
Sbjct: 94  NDATIEAIAALEGVSIVVAKKVAEERVKSPFTSLEDLKLRVPLGKNLK 141


>gi|171317870|ref|ZP_02907047.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
 gi|171096939|gb|EDT41809.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
          Length = 201

 Score = 41.1 bits (95), Expect = 0.98,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++    + PF   +D  SRV      
Sbjct: 33  ALESVKGLGPVKSKAIIDERTKNGPFKDADDLASRVKGLGTK 74


>gi|331092197|ref|ZP_08341027.1| hypothetical protein HMPREF9477_01670 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330401969|gb|EGG81543.1| hypothetical protein HMPREF9477_01670 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 220

 Score = 41.1 bits (95), Expect = 0.99,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 11 FVHLQVHSS-YSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-ACAAGIQ 68
          F+   +H   YS  +  L L +++          I ITD +++    +++++ A   G  
Sbjct: 2  FIDTHMHECTYS-KDSYLKLEDMVKVAKRRGLGGICITDHDDM-GLKQYAEEYAKKVGFP 59

Query: 69 PIIGCQLDIDMQD 81
            +G +      D
Sbjct: 60 IFVGIEFFSLQGD 72


>gi|312129879|ref|YP_003997219.1| php domain protein [Leadbetterella byssophila DSM 17132]
 gi|311906425|gb|ADQ16866.1| PHP domain protein [Leadbetterella byssophila DSM 17132]
          Length = 555

 Score = 41.1 bits (95), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 10/67 (14%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+YS  +G  S+  +             I D +           A A G+ P    
Sbjct: 324 LHNHSTYS--DGEASVEAMAQACRDLGFVYFGIADHS--------QTAAYAKGLWPETVS 373

Query: 74  QLDIDMQ 80
           +   ++ 
Sbjct: 374 KQHKEID 380


>gi|297565200|ref|YP_003684172.1| GTP-binding protein Obg/CgtA [Meiothermus silvanus DSM 9946]
 gi|296849649|gb|ADH62664.1| GTP-binding protein Obg/CgtA [Meiothermus silvanus DSM 9946]
          Length = 415

 Score = 41.1 bits (95), Expect = 0.99,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 60/187 (32%), Gaps = 30/187 (16%)

Query: 843  KGVGTTTARHIMEAS--------ADKP---FDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            KG+G    RHI             ++P   F +L       D   L+R  L +L     L
Sbjct: 222  KGLGLEFLRHIARTRVLLYVLDAGERPVSNFQTLRAELRSYDPDLLSRPALIALNKIDLL 281

Query: 892  DCFGYSR--MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            +    +R   +L Q+   +   +    K   +  E +FA         +       E   
Sbjct: 282  EEEEVTRLEAELSQTGLPVLAVSVLERKGLESLVEALFALVAAAPKPALATPAPRPEEPQ 341

Query: 950  VRFENEQRVLGFY-------------FSGHPLDV---YKPILRKMGIKGYEESVATIRGN 993
                 E    G Y               G  ++     + + ++ G++   +S     G+
Sbjct: 342  GVQVREVEE-GVYEVQAPQVERHLRRLKGDLMEATSYLQDLFKRYGVESALKSKGVRAGD 400

Query: 994  NIRLAAM 1000
             +RLA +
Sbjct: 401  TVRLAGL 407


>gi|167586539|ref|ZP_02378927.1| helix-hairpin-helix motif [Burkholderia ubonensis Bu]
          Length = 117

 Score = 41.1 bits (95), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 11/64 (17%)

Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874
                VNT   D          +L  IKG+G   A+ I++   A  PF + +D  +RV  
Sbjct: 19  WAAVDVNTAGED----------ALIGIKGIGPARAKAILDERSAHGPFKNADDLAARVKG 68

Query: 875 KKLN 878
              +
Sbjct: 69  MGGH 72


>gi|311900165|dbj|BAJ32573.1| hypothetical protein KSE_68150 [Kitasatospora setae KM-6054]
          Length = 326

 Score = 41.1 bits (95), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 20/213 (9%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +HS +S+  G  S   +     A      A+TD          +       +  I    
Sbjct: 102 HLHSDWSV--GTASPERMARTARALGHHWAALTDRG-------LAPDRLREQLDLIEQLN 152

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +     L  T     P  T+          +  +RL  +V+ ++  D G         
Sbjct: 153 PRLAPFRLLTGTECEILPDGTLD------QDEDLLRRLDVVVAAVHT-DPGDDPAATTRR 205

Query: 135 WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR 194
            L       + +L   +   +       +   A+      ++       V +  H    R
Sbjct: 206 LLAAARNPLVDVLGHCTGRRLGEHPRPPAEFDADAVFTACREHDT---AVEINCH-PDRR 261

Query: 195 YRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                ++  A           ++    + D++ 
Sbjct: 262 DPPDDLLARAADLGCLFAIDTDAHAPGQLDWQL 294


>gi|304315218|ref|YP_003850365.1| hypothetical protein MTBMA_c14730 [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588677|gb|ADL59052.1| hypothetical protein MTBMA_c14730 [Methanothermobacter marburgensis
           str. Marburg]
          Length = 173

 Score = 41.1 bits (95), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 23/123 (18%)

Query: 346 NVIARMKFSGYFLIVADFIQWAKKNN-IPVGP-GRGSGAGSVTAYALT-------ITDID 396
           N+I +  FS   + V     + ++     V P   GS  G V  + L        I   +
Sbjct: 44  NMICQ--FSIILITVWIITVFIRRRMRYMVHPYAAGSAMGWVVNFELRYDGLLWRIRTPN 101

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQ-------DRRDEVIRYVQNKY-----GHERVA 444
           P+  S + ER +N +    P  + D  Q       D R     + +  +       ERVA
Sbjct: 102 PVNRSQVNERLVNIEGPRCPKCETDLEQVDKFYWYDIRCPYCNFSKKTWLHIAKSEERVA 161

Query: 445 QII 447
           +I 
Sbjct: 162 KIA 164


>gi|182419048|ref|ZP_02950302.1| PHP domain protein [Clostridium butyricum 5521]
 gi|237669315|ref|ZP_04529297.1| PHP C- domain protein [Clostridium butyricum E4 str. BoNT E
          BL5262]
 gi|182377003|gb|EDT74573.1| PHP domain protein [Clostridium butyricum 5521]
 gi|237655202|gb|EEP52760.1| PHP C- domain protein [Clostridium butyricum E4 str. BoNT E
          BL5262]
          Length = 230

 Score = 41.1 bits (95), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           +HS+ S  +G  +   ++          I++TD N      E        GI+ I G 
Sbjct: 8  HIHSTAS--DGNCTPKEVVSIAKKRNVDIISLTDHNTTQGLNEAISYGNNIGIKVIPGV 64


>gi|91787665|ref|YP_548617.1| hypothetical protein Bpro_1783 [Polaromonas sp. JS666]
 gi|91696890|gb|ABE43719.1| conserved hypothetical protein [Polaromonas sp. JS666]
          Length = 181

 Score = 41.1 bits (95), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
           L  IKG+G  T + I+       F + +DF +RV      
Sbjct: 31  LDGIKGIGPVTTKLIISERKKGEFKNWDDFIARVKGVGDK 70


>gi|111220663|ref|YP_711457.1| aspartate tRNA synthetase [Frankia alni ACN14a]
 gi|111148195|emb|CAJ59864.1| aspartate tRNA synthetase [Frankia alni ACN14a]
          Length = 618

 Score = 41.1 bits (95), Expect = 1.1,   Method: Composition-based stats.
 Identities = 7/55 (12%), Positives = 17/55 (30%), Gaps = 4/55 (7%)

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             M      +  A   G  + +   V  ++Q     G  + +V   + +   +   
Sbjct: 27   AMRTHLCADLRADHVGRTVSVCGWVAHRRQH----GQSLTFVDLRDHSGLLQVVV 77


>gi|288561413|ref|YP_003424899.1| PHP domain-containing protein [Methanobrevibacter ruminantium M1]
 gi|288544123|gb|ADC48007.1| PHP domain-containing protein [Methanobrevibacter ruminantium M1]
          Length = 221

 Score = 41.1 bits (95), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           +HS +S  +      +IL +       AIAI+D N
Sbjct: 6  HIHSVFS-GDSRSEPIDILIQAQKIGLDAIAISDHN 40


>gi|229821037|ref|YP_002882563.1| PHP domain protein [Beutenbergia cavernae DSM 12333]
 gi|229566950|gb|ACQ80801.1| PHP domain protein [Beutenbergia cavernae DSM 12333]
          Length = 425

 Score = 41.1 bits (95), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 2/94 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+ +S  +G+ S++ +  +  A     +A+TD N +             GI  + G +
Sbjct: 149 HAHTLHS--DGSESIDQLAARGVASGLDFLAVTDHNTVSHHAHLPGVGARHGISLVPGQE 206

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           +           + G   F       +    A G
Sbjct: 207 VTTARGHANAFGDIGWIDFRRPGQDWVDDVAARG 240


>gi|229493739|ref|ZP_04387521.1| PHP domain protein [Rhodococcus erythropolis SK121]
 gi|229319339|gb|EEN85178.1| PHP domain protein [Rhodococcus erythropolis SK121]
          Length = 284

 Score = 41.1 bits (95), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 11/89 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  +   ++   A      +AITD +      E +Q A  AG+  + G 
Sbjct: 5   LHTHSNAS--DGTDTPAALMRAAADAGLDVVAITDHDTTSGWAEAAQ-ALPAGVSLVRGM 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++  +         +G+  +P    ++  
Sbjct: 62  EMSCE--------GRGERGWPVAVHLLAY 82


>gi|71907132|ref|YP_284719.1| hypothetical protein Daro_1500 [Dechloromonas aromatica RCB]
 gi|71846753|gb|AAZ46249.1| hypothetical protein Daro_1500 [Dechloromonas aromatica RCB]
          Length = 370

 Score = 41.1 bits (95), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
           LAAIKG+    AR I+ A    P+ SL+D C 
Sbjct: 324 LAAIKGLPREVARAIIAAR---PYASLDDVCK 352


>gi|241662682|ref|YP_002981042.1| PHP domain-containing protein [Ralstonia pickettii 12D]
 gi|240864709|gb|ACS62370.1| PHP domain protein [Ralstonia pickettii 12D]
          Length = 286

 Score = 41.1 bits (95), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L  HS+ S  +G L+ + +  + AA      A+TD + L  
Sbjct: 14 LHCHSTVS--DGMLAPHEVAARAAAHGVTLWALTDHDELGG 52


>gi|269926190|ref|YP_003322813.1| PHP domain protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269789850|gb|ACZ41991.1| PHP domain protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 584

 Score = 41.1 bits (95), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +G  S+ ++     +     I ITD 
Sbjct: 351 LHMHSTWS--DGKCSIRDMALAARSLGYEYICITDH 384


>gi|126180378|ref|YP_001048343.1| phosphotransferase domain-containing protein [Methanoculleus
          marisnigri JR1]
 gi|125863172|gb|ABN58361.1| PHP C-terminal domain protein [Methanoculleus marisnigri JR1]
          Length = 288

 Score = 41.1 bits (95), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H+ +S  +    + + L   A      +AITD N +        +A   GI+
Sbjct: 27 LHFHTRHS--DSPTRVRDALKLAARRGI-GLAITDHNQVGGV----SEAERQGIR 74


>gi|291296714|ref|YP_003508112.1| PHP domain-containing protein [Meiothermus ruber DSM 1279]
 gi|290471673|gb|ADD29092.1| PHP domain protein [Meiothermus ruber DSM 1279]
          Length = 536

 Score = 41.1 bits (95), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            VHS+YS  +G+ +L  + +   A     + I D +           A A G++P    +
Sbjct: 307 HVHSTYS--DGSATLRQMAEAALAQGLEYMVICDHS--------QSAAYAGGLRPPDVLR 356

Query: 75  LDIDMQ 80
              +++
Sbjct: 357 QWAEIE 362


>gi|330885050|gb|EGH19199.1| hypothetical protein Pgy4_40155 [Pseudomonas syringae pv. glycinea
            str. race 4]
          Length = 39

 Score = 41.1 bits (95), Expect = 1.1,   Method: Composition-based stats.
 Identities = 5/37 (13%), Positives = 15/37 (40%)

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
            PL + +  L     +  ++ ++      + +A +V  
Sbjct: 1    PLALLRRQLAAKRFRSSQDLLSLENDRTLSVAGLVTC 37


>gi|225018886|ref|ZP_03708078.1| hypothetical protein CLOSTMETH_02836 [Clostridium methylpentosum
          DSM 5476]
 gi|224948356|gb|EEG29565.1| hypothetical protein CLOSTMETH_02836 [Clostridium methylpentosum
          DSM 5476]
          Length = 248

 Score = 41.1 bits (95), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 13/43 (30%)

Query: 14 LQVHS-----SYS-LLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  H+     +YS LLE        ++        A+AITD  
Sbjct: 7  LHTHTIASDHAYSTLLEN-------IEYAKRAGMQALAITDHG 42


>gi|313497708|gb|ADR59074.1| TrpH family protein [Pseudomonas putida BIRD-1]
          Length = 257

 Score = 41.1 bits (95), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 20/59 (33%)

Query: 41 QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
            A+A+TD + L    E  Q     G++ + G +L                P    P +
Sbjct: 1  MQALALTDHDTLEGLPEARQACVDLGMRWVSGVELSCTWGGATIHVLGYDFPLDAPPLL 59


>gi|160940323|ref|ZP_02087668.1| hypothetical protein CLOBOL_05213 [Clostridium bolteae ATCC
          BAA-613]
 gi|158436903|gb|EDP14670.1| hypothetical protein CLOBOL_05213 [Clostridium bolteae ATCC
          BAA-613]
          Length = 269

 Score = 41.1 bits (95), Expect = 1.1,   Method: Composition-based stats.
 Identities = 6/36 (16%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           +H+ +S  +    ++  ++K        + ITD +
Sbjct: 6  HLHTEFS-GDSNTPISLQIEKAIELGMKEMCITDHH 40


>gi|255994074|ref|ZP_05427209.1| histidinol phosphatase [Eubacterium saphenum ATCC 49989]
 gi|255993742|gb|EEU03831.1| histidinol phosphatase [Eubacterium saphenum ATCC 49989]
          Length = 246

 Score = 40.7 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S   G  S+ + +         A+AI+D 
Sbjct: 13 HTHTVFS--HGKGSIEDNVLSARKLGLKAVAISDH 45


>gi|220911843|ref|YP_002487152.1| PHP domain protein [Arthrobacter chlorophenolicus A6]
 gi|219858721|gb|ACL39063.1| PHP domain protein [Arthrobacter chlorophenolicus A6]
          Length = 528

 Score = 40.7 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
           VH+ +S  +G   + + + +        + +TD  N+ 
Sbjct: 52 HVHTLFS-NDGKYRVQDHVRQAIRYGVDWLVLTDHGNVA 89


>gi|307256525|ref|ZP_07538306.1| Tryptophan synthase alpha chain [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864935|gb|EFM96837.1| Tryptophan synthase alpha chain [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 269

 Score = 40.7 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 40/125 (32%), Gaps = 10/125 (8%)

Query: 33  LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
             + A+    A+ I D   L  A EF+Q A   GIQ +  C  + D     ++    +  
Sbjct: 115 FKRCASTGVDAVLIADVPVLA-AEEFTQAAKKHGIQSVFICPPNADQATIERIARLTEGY 173

Query: 93  FPTVPSI-VLLVSTAEGYQRLIELV-------SRMYLLDQGKQSVRICLSWLQEIGTEGL 144
              V    V         + L  L+       S   L   G          L  +G +G 
Sbjct: 174 TYLVSRAGVTSAENQAHAKNLDNLIESLKRSNSAPILQGFGIAKPAQVKEALA-LGCDGA 232

Query: 145 IMLTG 149
           I  + 
Sbjct: 233 ISGSA 237


>gi|283782025|ref|YP_003372780.1| DNA uptake protein-like protein DNA-binding protein [Pirellula
           staleyi DSM 6068]
 gi|283440478|gb|ADB18920.1| DNA uptake protein-like protein DNA-binding protein [Pirellula
           staleyi DSM 6068]
          Length = 172

 Score = 40.7 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 827 DFKVGDN-RIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLES 884
           DFK+  N   +  L  + GVG + A+ I+E      PF S ED   RV            
Sbjct: 87  DFKLDINGADWPELCLLPGVGESLAQSIVEDRQRRGPFASHEDLL-RVRKLGPKTLAAIR 145

Query: 885 LVFAGALDCFGYSRMQL 901
                  +  G +  ++
Sbjct: 146 PYLLPLEESQGPNAAEV 162


>gi|221198115|ref|ZP_03571161.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Burkholderia multivorans CGD2M]
 gi|221208394|ref|ZP_03581397.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Burkholderia multivorans CGD2]
 gi|221171807|gb|EEE04251.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Burkholderia multivorans CGD2]
 gi|221182047|gb|EEE14448.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Burkholderia multivorans CGD2M]
          Length = 207

 Score = 40.7 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++    + PF   +D  +RV      
Sbjct: 33  ALESVKGLGPVKSKAIIDERTKNGPFKDADDLATRVKGLGTK 74


>gi|221215146|ref|ZP_03588113.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Burkholderia multivorans CGD1]
 gi|221165082|gb|EED97561.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Burkholderia multivorans CGD1]
          Length = 207

 Score = 40.7 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++    + PF   +D  +RV      
Sbjct: 33  ALESVKGLGPVKSKAIIDERTKNGPFKDADDLATRVKGLGTK 74


>gi|196231131|ref|ZP_03129991.1| PHP domain protein [Chthoniobacter flavus Ellin428]
 gi|196224961|gb|EDY19471.1| PHP domain protein [Chthoniobacter flavus Ellin428]
          Length = 584

 Score = 40.7 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             H++ S  +G  +L  +++         + I D 
Sbjct: 348 HNHTTAS--DGRNTLAEMVEAAQELGLQYLGIADH 380


>gi|161524601|ref|YP_001579613.1| hypothetical protein Bmul_1428 [Burkholderia multivorans ATCC
           17616]
 gi|189350643|ref|YP_001946271.1| putative DNA uptake protein and related DNA-binding protein
           [Burkholderia multivorans ATCC 17616]
 gi|160342030|gb|ABX15116.1| conserved hypothetical protein [Burkholderia multivorans ATCC
           17616]
 gi|189334665|dbj|BAG43735.1| putative DNA uptake protein and related DNA-binding protein
           [Burkholderia multivorans ATCC 17616]
          Length = 207

 Score = 40.7 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
           +L ++KG+G   ++ I++    + PF   +D  +RV      
Sbjct: 33  ALESVKGLGPVKSKAIIDERTKNGPFKDADDLATRVKGLGTK 74


>gi|124028497|ref|YP_001013817.1| hypothetical protein Hbut_1658 [Hyperthermus butylicus DSM 5456]
 gi|123979191|gb|ABM81472.1| conserved archaeal protein [Hyperthermus butylicus DSM 5456]
          Length = 239

 Score = 40.7 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF--KVGDNRIYY-S 838
           HY        M L     + +    +      ++ +  +     V+F    G   + + S
Sbjct: 84  HYDRVRKRRHMDLHRIEYDDLTSLAKSMLPSIVEQIVRNREQIFVEFFNIAGPITLRFHS 143

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
           L  +  VG  T   I+E    +PF   ED  SRV
Sbjct: 144 LELLPSVGKKTVLRILEQREKEPFKDFEDIASRV 177


>gi|327400013|ref|YP_004340852.1| PHP domain-containing protein [Archaeoglobus veneficus SNP6]
 gi|327315521|gb|AEA46137.1| PHP domain protein [Archaeoglobus veneficus SNP6]
          Length = 218

 Score = 40.7 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 80/227 (35%), Gaps = 48/227 (21%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VHS+ S  +G L  + I  ++AA     +AITD             A  + I  I+ C
Sbjct: 4   LHVHSTLS--DGELIPSEIARRMAAMGNEGVAITDH------------ADFSNIPLIMDC 49

Query: 74  -QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV-----SRMYLLDQGKQ 127
            +   D++D+  +          VP  ++  +    ++   E+V     +    +++G  
Sbjct: 50  LRKLQDLRDDYGVELLFGVEITHVPPKLIGKAVELAWREGAEIVVVHGETIAEPVEKGTN 109

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            V +    +  +   GLI                   + AE           + +Y+ + 
Sbjct: 110 EVAV-QEEIDILAHPGLI-----------------DIKTAELAA-------SNGVYLEIS 144

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEE--DYEAHDVLM 232
             RG+       V ++A      LV   ++    +   D  A  VL+
Sbjct: 145 ARRGH-CLANGHVARIALETGCKLVINTDAHSPDDFIDDGFAMKVLV 190


>gi|293189174|ref|ZP_06607899.1| PHP domain protein [Actinomyces odontolyticus F0309]
 gi|292821912|gb|EFF80846.1| PHP domain protein [Actinomyces odontolyticus F0309]
          Length = 282

 Score = 40.7 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            HS+YS  +G  +   +L   A      IA+TD +      E +      G+  I G +
Sbjct: 8  HTHSAYS--DGTDTPAQLLAIAAQAGLDTIALTDHDTTIGWDEAAAAVADTGVSLIRGAE 65

Query: 75 LDI 77
          +  
Sbjct: 66 MSC 68


>gi|91772908|ref|YP_565600.1| hypothetical protein Mbur_0903 [Methanococcoides burtonii DSM 6242]
 gi|91711923|gb|ABE51850.1| DUF655 containing protein [Methanococcoides burtonii DSM 6242]
          Length = 198

 Score = 40.7 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 21/49 (42%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           L  + G+G      I++      F  L+D   RV    + ++++ + + 
Sbjct: 127 LELLPGIGKKLMWAIIDERKKGEFKDLQDLHDRVGGVHIPQKIIVNRIL 175


>gi|56478443|ref|YP_160032.1| hypothetical protein ebA5293 [Aromatoleum aromaticum EbN1]
 gi|56314486|emb|CAI09131.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 212

 Score = 40.7 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ YS  +  L   N++ +  A    A+ IT+ 
Sbjct: 6  HCHTKYSY-DNWLEPVNLIRRARALGLDAVCITEH 39


>gi|94987492|ref|YP_595425.1| metal-dependent phosphoesterase [Lawsonia intracellularis
          PHE/MN1-00]
 gi|94731741|emb|CAJ55104.1| predicted metal-dependent phosphoesterases (PHP family) [Lawsonia
          intracellularis PHE/MN1-00]
          Length = 288

 Score = 40.7 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 9  PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          P FV L  H+  S  +G  +   ++ K A  +  AIAITD + +    E  Q      I+
Sbjct: 3  PYFVDLHTHTIAS--DGTDTPRELVIKAAKLKLAAIAITDHDTIAGLEEAEQAGRENQIE 60

Query: 69 PIIGC 73
           I GC
Sbjct: 61 VIRGC 65


>gi|304315526|ref|YP_003850673.1| DNA polymerase II, small subunit [Methanothermobacter marburgensis
            str. Marburg]
 gi|302588985|gb|ADL59360.1| predicted DNA polymerase II, small subunit [Methanothermobacter
            marburgensis str. Marburg]
          Length = 487

 Score = 40.7 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 7/63 (11%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 971  YKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             + +L++         +A +RG +  + +  ++   +   T+   R+  +   +   E  
Sbjct: 118  LRDLLKRRPELKSHVPIADLRGGDDAVSIIGIINEIRT--TKNNHRM--LELEDDTGEIT 173

Query: 1029 ANF 1031
               
Sbjct: 174  VVV 176


>gi|262204293|ref|YP_003275501.1| phosphoenolpyruvate carboxykinase (GTP) [Gordonia bronchialis DSM
           43247]
 gi|262087640|gb|ACY23608.1| Phosphoenolpyruvate carboxykinase (GTP) [Gordonia bronchialis DSM
           43247]
          Length = 608

 Score = 40.7 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 67/194 (34%), Gaps = 29/194 (14%)

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           F   R+  V    + K     V    T GS Q  AA   VG   + P + +  +   + +
Sbjct: 419 FGGRRKTTVPLVTEAKDWQNGVFMGATVGSEQTAAAEGKVGTVRRDPMAMLPFMGYHVGD 478

Query: 482 DPAHPVSLQAIADDSRFREARLAD----------------PSVDRLLEISQKLEGLYRHA 525
             AH +++   AD ++  +    +                 +   L  I  ++EG     
Sbjct: 479 YFAHWINIGKNADATKLPKVFYVNWFRRGDDGRFLWPGFGENSRVLKWIIGRIEGENEGV 538

Query: 526 STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW-------IEKAGLIKFDFLGLKT 578
           ST   GIV     +  +  +            F+          IE+     FDF+G K 
Sbjct: 539 ST-PIGIVAKPDEI-DVTGLDVPADDLAAALDFDADEWRKEIPLIEEL----FDFVGEKL 592

Query: 579 LTLLQKSLDFLAQR 592
            T L+  LD L QR
Sbjct: 593 PTNLRDELDALKQR 606


>gi|149183060|ref|ZP_01861513.1| hypothetical protein BSG1_17740 [Bacillus sp. SG-1]
 gi|148849241|gb|EDL63438.1| hypothetical protein BSG1_17740 [Bacillus sp. SG-1]
          Length = 573

 Score = 40.7 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS+++  +GA SL  +++         +A TD 
Sbjct: 340 LHMHSTWT--DGAYSLEEMIEACREKGYKYMAFTDH 373


>gi|325522913|gb|EGD01364.1| error-prone DNA polymerase [Burkholderia sp. TJI49]
          Length = 86

 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 2/32 (6%)

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +V+S+Q   T  G  + ++T  +         
Sbjct: 1    IVISRQMPGTSNG--VMFMTLEDETGCVNVIV 30


>gi|325970922|ref|YP_004247113.1| PHP domain protein [Spirochaeta sp. Buddy]
 gi|324026160|gb|ADY12919.1| PHP domain protein [Spirochaeta sp. Buddy]
          Length = 236

 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 15/66 (22%)

Query: 14 LQVHS--------SYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
          L  HS         +S          +  +        +A+TD N+  +   F +     
Sbjct: 7  LHNHSCLSPCANDDFS-------PALLAVEAMEQGIQILALTDHNSARNLAPFQEACQLC 59

Query: 66 GIQPII 71
          GI P+ 
Sbjct: 60 GILPLF 65


>gi|270294332|ref|ZP_06200534.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275799|gb|EFA21659.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 360

 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G +   N + + A      IAITD 
Sbjct: 58 HTHTIFS--DGDIKPENRVWEAAIRGLDVIAITDH 90


>gi|212213026|ref|YP_002303962.1| DNA Polymerase X family [Coxiella burnetii CbuG_Q212]
 gi|212011436|gb|ACJ18817.1| DNA Polymerase X family [Coxiella burnetii CbuG_Q212]
          Length = 594

 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H++ +  +G  SL  + +         +AITD 
Sbjct: 363 LHCHTNAT--DGKYSLEAMAEAAQTRGYRYMAITDH 396


>gi|209364119|ref|YP_001424924.2| DNA Polymerase X family [Coxiella burnetii Dugway 5J108-111]
 gi|212218905|ref|YP_002305692.1| DNA Polymerase X family [Coxiella burnetii CbuK_Q154]
 gi|215918974|ref|NP_819524.2| DNA polymerase X family/PHP domain-containing protein [Coxiella
           burnetii RSA 493]
 gi|206583859|gb|AAO90038.2| DNA Polymerase X family [Coxiella burnetii RSA 493]
 gi|207082052|gb|ABS78173.2| DNA Polymerase X family [Coxiella burnetii Dugway 5J108-111]
 gi|212013167|gb|ACJ20547.1| DNA Polymerase X family [Coxiella burnetii CbuK_Q154]
          Length = 594

 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H++ +  +G  SL  + +         +AITD 
Sbjct: 363 LHCHTNAT--DGKYSLEAMAEAAQTRGYRYMAITDH 396


>gi|161830379|ref|YP_001596420.1| DNA-binding/PHP domain-containing protein [Coxiella burnetii RSA
           331]
 gi|164686005|ref|ZP_01947535.2| PHP domain protein [Coxiella burnetii 'MSU Goat Q177']
 gi|161762246|gb|ABX77888.1| putative DNA-binding/PHP domain protein [Coxiella burnetii RSA 331]
 gi|164601535|gb|EAX31846.2| PHP domain protein [Coxiella burnetii 'MSU Goat Q177']
          Length = 578

 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H++ +  +G  SL  + +         +AITD 
Sbjct: 347 LHCHTNAT--DGKYSLEAMAEAAQTRGYRYMAITDH 380


>gi|312622081|ref|YP_004023694.1| histidinol phosphate phosphatase hisj family
          [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202548|gb|ADQ45875.1| histidinol phosphate phosphatase HisJ family
          [Caldicellulosiruptor kronotskyensis 2002]
          Length = 266

 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           +HS++S  +  +++ + + K        IA TD  +L
Sbjct: 5  HIHSNFSS-DSNMNMEDAVKKAIELNLEEIAFTDHMDL 41


>gi|282856049|ref|ZP_06265335.1| histidinol phosphate phosphatase HisJ family [Pyramidobacter
          piscolens W5455]
 gi|282586070|gb|EFB91352.1| histidinol phosphate phosphatase HisJ family [Pyramidobacter
          piscolens W5455]
          Length = 270

 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +H+  S  +   ++ + LD+        + ITD 
Sbjct: 6  HIHTEASS-DSKTTIEDQLDRAVKLGMKYVCITDH 39


>gi|145591951|ref|YP_001153953.1| putative nucleotide binding protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145283719|gb|ABP51301.1| putative nucleotide binding protein [Pyrobaculum arsenaticum DSM
           13514]
          Length = 195

 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 15/88 (17%)

Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY---------------SLAAIKG 844
           +KI K  +  R  ++Q          V   V      +               SL  ++G
Sbjct: 74  DKIDKIVRRIRYEDLQPQGRENLKAVVRKIVEQQEQRFVKWLNEAGPITLKLHSLELLRG 133

Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRV 872
           VG    + I+E    + F S ED   R 
Sbjct: 134 VGKRKVQEILEERKKRQFTSYEDVKQRT 161


>gi|254291996|ref|ZP_04962775.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|150422073|gb|EDN14041.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
          Length = 290

 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++D+  + +   +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIAQQQYPLQLVN 62


>gi|18976771|ref|NP_578128.1| s1p family ribosomal protein [Pyrococcus furiosus DSM 3638]
 gi|18892362|gb|AAL80523.1| member of s1p family of ribosomal proteins [Pyrococcus furiosus DSM
            3638]
          Length = 740

 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/103 (12%), Positives = 33/103 (32%), Gaps = 16/103 (15%)

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL--RKMGIKG 982
            ++    +    D+I ++   V       +             PL  Y+ +   +++ +  
Sbjct: 164  DLLGKREYKPGDEIIVQVLDVRPDKREIDF-LEA--------PLTKYREVHVKKELPVTP 214

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             EE    + G  +++   V   Q      G    + T ++   
Sbjct: 215  IEELKEELAGRTVKIRGKVTQVQV----TGGPTVF-TLTDGTG 252


>gi|74025020|ref|XP_829076.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70834462|gb|EAN79964.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 865

 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 89/285 (31%), Gaps = 32/285 (11%)

Query: 78  DMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
           D +D   + + + K    +V SI+  V     Y  L   VS   L++  ++  ++ +   
Sbjct: 446 DPEDRTMVKSIRMKQHKASVISILEQVRNE--YCSLCCAVSLPDLVEAFRRKRQVNI--- 500

Query: 137 QEIGTEGLI--ML--------TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            E+    +I   L               ++     N  +   +RL+  +      + +  
Sbjct: 501 -EVAKSAMIRDALEKQKRLFECAERKLEVEANRAKNLQE--RERLIELRNERLQEMMMEK 557

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R +  +      + Q      + L    N+    E   E  + L      T   Q  R 
Sbjct: 558 VRRKREEDL----IAQQNAAARIKLQQERNAEREKEYQRELQERLERAEERTARQQAARD 613

Query: 247 RVTPDHYL---KNRSEMVSIFSDLPEALENTVEIARR------CSFILQVHAPILPRFIE 297
            +     +   KN  E  +    + E  E   EI RR          L        +   
Sbjct: 614 HLLEQRRIRRKKNAEERQARIERMAEMQEQQSEILRRKYEERDAKVQLVQEERERKQREA 673

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
           +E    +  +  ELR +A     +R  +   A     Q+   RL 
Sbjct: 674 QELLAARAAKSQELREQARQRALLREEEVRQAALGQQQEVENRLR 718


>gi|195953813|ref|YP_002122103.1| PHP domain protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195933425|gb|ACG58125.1| PHP domain protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 576

 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +G  SL  ++          I I+D 
Sbjct: 348 HMHTTYS--DGKASLRQMVQACYELGYRYIVISDH 380


>gi|148658551|ref|YP_001278756.1| phosphotransferase domain-containing protein [Roseiflexus sp. RS-1]
 gi|148570661|gb|ABQ92806.1| PHP C-terminal domain protein [Roseiflexus sp. RS-1]
          Length = 458

 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
           L  H+ +S  +G   +  +L+   A     +A+TD N + 
Sbjct: 155 LHAHTVHS--DGEWDIPALLEAARARHLDFVALTDHNTIA 192


>gi|15678578|ref|NP_275693.1| DNA-dependent DNA polymerase family X protein [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621626|gb|AAB85056.1| DNA-dependent DNA polymerase family X [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 550

 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS +S  +G  S+  + +  +   +  IAITD 
Sbjct: 338 LHMHSLFS--DGIDSMEQMAEYASVLGREYIAITDH 371


>gi|297578777|ref|ZP_06940705.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297536371|gb|EFH75204.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 290

 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++D+  + +   +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIAQQQYPLQLVN 62


>gi|331698772|ref|YP_004335011.1| PHP domain-containing protein [Pseudonocardia dioxanivorans CB1190]
 gi|326953461|gb|AEA27158.1| PHP domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 340

 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             H+  S  +G   L  +++         + ITD 
Sbjct: 108 HSHTDAS--DGGSPLAEMVETAIDLGHDYLVITDH 140


>gi|229529735|ref|ZP_04419125.1| hypothetical protein VCG_002832 [Vibrio cholerae 12129(1)]
 gi|229333509|gb|EEN98995.1| hypothetical protein VCG_002832 [Vibrio cholerae 12129(1)]
 gi|327483878|gb|AEA78285.1| Predicted metal-dependent phosphoesterases (PHP family) [Vibrio
          cholerae LMA3894-4]
          Length = 290

 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++D+  + +   +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIAQQQYPLQLVN 62


>gi|160900843|ref|YP_001566425.1| phosphotransferase domain-containing protein [Delftia acidovorans
          SPH-1]
 gi|160366427|gb|ABX38040.1| PHP domain protein [Delftia acidovorans SPH-1]
          Length = 287

 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L  HS  S  +G L+   + ++ A+      A+TD + +  
Sbjct: 10 LHSHSVVS--DGTLTPEQLAERAASRGVQLSALTDHDEVGG 48


>gi|219850480|ref|YP_002464913.1| ATP-dependent DNA helicase RecG [Chloroflexus aggregans DSM 9485]
 gi|219544739|gb|ACL26477.1| ATP-dependent DNA helicase RecG [Chloroflexus aggregans DSM 9485]
          Length = 862

 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 44/170 (25%), Gaps = 52/170 (30%)

Query: 898  RMQLLQ-SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R Q L  +++ ++         RTN      A         +   + S      R  +++
Sbjct: 71   RDQALATAIEELRSLF------RTNHPTPALATTAPVTLPSLAPRRTSSRQERQRLASDK 124

Query: 957  RVLGFYFSGHPLDVYK----------------PILRKMGIKGYEESV------------- 987
                     HPL                       R++G+    + +             
Sbjct: 125  ---------HPLTDLDLDAKLDQIAGVDSRTVASFRRIGVVTIRDLLYHFPRRYDDVRSR 175

Query: 988  ----ATIRGNNIRLAAMVVSKQQKKTRKGSRI-GWVTFSEPAKEYEANFF 1032
                    G    +   V   +   T  G ++   V  S+     EA FF
Sbjct: 176  RTIDELQVGAEETVIGEVTDVRTIGT--GPKLRVRVEVSDETGSIEAIFF 223


>gi|254226703|ref|ZP_04920280.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125620764|gb|EAZ49121.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 290

 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++D+  + +   +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIAQQQYPLQLVN 62


>gi|328786667|ref|XP_001122024.2| PREDICTED: LOW QUALITY PROTEIN: e3 SUMO-protein ligase RanBP2 [Apis
           mellifera]
          Length = 2830

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 61/153 (39%), Gaps = 9/153 (5%)

Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
            +Q   I D+    S  RP P          +   + I S   +I  + ++T+ ++   +
Sbjct: 851 KLQHQDILDLSRNRSEARPSPERLDAQI---RAINQMIHSKDNMIQSIAEQTKTILELNK 907

Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK--ERFISGASKNGISKTIAVNIFE 751
            VM+I + L+     E   LR+ + K+  + ++     E  +   S++  +         
Sbjct: 908 TVMEIVERLAK----EMTELRKEIQKQRTQTVNVNPNLEEDLCILSEDDYNDLNYNANQS 963

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
             +  +   F  SH   Y+ + Y +A  + +YP
Sbjct: 964 GASSISGNMFQSSHRHPYSHLVYPSATFQGYYP 996


>gi|291550047|emb|CBL26309.1| histidinol phosphate phosphatase HisJ family [Ruminococcus
          torques L2-14]
          Length = 273

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +H+ +S  +   S++++LD        A+ ITD 
Sbjct: 7  HMHTRFSE-DSDASVHSMLDAAIERGMEAVCITDH 40


>gi|289580814|ref|YP_003479280.1| DNA-directed DNA polymerase [Natrialba magadii ATCC 43099]
 gi|289530367|gb|ADD04718.1| DNA-directed DNA polymerase [Natrialba magadii ATCC 43099]
          Length = 586

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H+ +S  +G  S+  ++            I D 
Sbjct: 356 LHSHTEWS--DGNTSIEAMVAAAEDRGYDYFGIADH 389


>gi|20090301|ref|NP_616376.1| hypothetical protein MA1442 [Methanosarcina acetivorans C2A]
 gi|19915301|gb|AAM04856.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 197

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
           L  + G+G      I++      F S +D   R+ S     +V+   +     D F   R
Sbjct: 124 LELLPGIGKKLMWSIIDERKKGEFKSFQDIRERIPSLHDPAKVIAHRIEEELKDDFIKYR 183


>gi|89902005|ref|YP_524476.1| PHP-like protein [Rhodoferax ferrireducens T118]
 gi|89346742|gb|ABD70945.1| PHP-like [Rhodoferax ferrireducens T118]
          Length = 319

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 13/55 (23%)

Query: 7  KSPSFV-----------HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          KSP++             L  HS+ S  +G L+   +  +   +     A+TD +
Sbjct: 11 KSPTYAKIVLVTSPFNADLHSHSTVS--DGTLTPEELAARAKTNGVALWALTDHD 63


>gi|116668963|ref|YP_829896.1| hypothetical protein Arth_0395 [Arthrobacter sp. FB24]
 gi|116609072|gb|ABK01796.1| PHP C-terminal domain protein [Arthrobacter sp. FB24]
          Length = 339

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G   +  + D      +  +A+TD 
Sbjct: 103 LHSHSDWS--DGGSPIELMADAARTLGREYLALTDH 136


>gi|15641190|ref|NP_230822.1| hypothetical protein VC1177 [Vibrio cholerae O1 biovar El Tor
          str. N16961]
 gi|121587804|ref|ZP_01677563.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121728253|ref|ZP_01681286.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147674944|ref|YP_001216748.1| hypothetical protein VC0395_A0798 [Vibrio cholerae O395]
 gi|153819080|ref|ZP_01971747.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153823504|ref|ZP_01976171.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227081349|ref|YP_002809900.1| hypothetical protein VCM66_1132 [Vibrio cholerae M66-2]
 gi|229505229|ref|ZP_04394739.1| hypothetical protein VCF_000437 [Vibrio cholerae BX 330286]
 gi|229511101|ref|ZP_04400580.1| hypothetical protein VCE_002508 [Vibrio cholerae B33]
 gi|229518220|ref|ZP_04407664.1| hypothetical protein VCC_002244 [Vibrio cholerae RC9]
 gi|229608248|ref|YP_002878896.1| hypothetical protein VCD_003166 [Vibrio cholerae MJ-1236]
 gi|254848303|ref|ZP_05237653.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255745587|ref|ZP_05419535.1| hypothetical protein VCH_001939 [Vibrio cholera CIRS 101]
 gi|262158340|ref|ZP_06029456.1| PHP family hydrolase [Vibrio cholerae INDRE 91/1]
 gi|262169498|ref|ZP_06037190.1| PHP family hydrolase [Vibrio cholerae RC27]
 gi|298498721|ref|ZP_07008528.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9655653|gb|AAF94336.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
          str. N16961]
 gi|121547968|gb|EAX58049.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121629504|gb|EAX61930.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|126510363|gb|EAZ72957.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126518972|gb|EAZ76195.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|146316827|gb|ABQ21366.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227009237|gb|ACP05449.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227013094|gb|ACP09304.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229344935|gb|EEO09909.1| hypothetical protein VCC_002244 [Vibrio cholerae RC9]
 gi|229351066|gb|EEO16007.1| hypothetical protein VCE_002508 [Vibrio cholerae B33]
 gi|229357452|gb|EEO22369.1| hypothetical protein VCF_000437 [Vibrio cholerae BX 330286]
 gi|229370903|gb|ACQ61326.1| hypothetical protein VCD_003166 [Vibrio cholerae MJ-1236]
 gi|254844008|gb|EET22422.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255736662|gb|EET92059.1| hypothetical protein VCH_001939 [Vibrio cholera CIRS 101]
 gi|262022311|gb|EEY41020.1| PHP family hydrolase [Vibrio cholerae RC27]
 gi|262029781|gb|EEY48429.1| PHP family hydrolase [Vibrio cholerae INDRE 91/1]
 gi|297543054|gb|EFH79104.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 290

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++D+  + +   +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIAQQQYPLQLVN 62


>gi|323474667|gb|ADX85273.1| PHP domain protein [Sulfolobus islandicus REY15A]
          Length = 219

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L VHS YS  +G     +I+    A     +AITD + 
Sbjct: 5  LHVHSRYS--DGKYFPKDIIAYARARNI-YVAITDHDT 39


>gi|300692106|ref|YP_003753101.1| hypothetical protein RPSI07_2468 [Ralstonia solanacearum PSI07]
 gi|299079166|emb|CBJ51834.1| conserved exported protein of unknown function [Ralstonia
           solanacearum PSI07]
          Length = 105

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
           +L  + GVG   ++ I+E    + P+    DF +RV    +  + L  L   G    FG 
Sbjct: 32  ALETLSGVGPKRSKAIVEERTKNGPYKDAADFMARVP--GIGEKSLAKLQNEGL--TFGK 87

Query: 897 SRMQLLQSLDNIQKY 911
               L     + +  
Sbjct: 88  GGAALAPVRKDARDA 102


>gi|153826665|ref|ZP_01979332.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|149739527|gb|EDM53755.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
          Length = 290

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++D+  + +   +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIAQQQYPLQLVN 62


>gi|134095737|ref|YP_001100812.1| hypothetical protein HEAR2569 [Herminiimonas arsenicoxydans]
 gi|133739640|emb|CAL62691.1| Conserved hypothetical protein, putative DNA-binding [Herminiimonas
           arsenicoxydans]
          Length = 121

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 819 PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKL 877
            S++    D +V       +L  IKG+G TT++ I+E       F    D  +RV     
Sbjct: 14  VSISFAFADVEVN-QADQAALDGIKGIGPTTSKAILEERKKGGNFKDWNDLQTRVKGVGD 72

Query: 878 NRRVLESLVFAGA 890
                E    AG 
Sbjct: 73  KSS--EKFSQAGL 83


>gi|330836465|ref|YP_004411106.1| PHP domain-containing protein [Spirochaeta coccoides DSM 17374]
 gi|329748368|gb|AEC01724.1| PHP domain protein [Spirochaeta coccoides DSM 17374]
          Length = 262

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           VH+ +S  +G  +++++L   A      +AITD 
Sbjct: 7  HVHTVFS--DGRNTISDVLRLAAQRNIGTLAITDH 39


>gi|313679719|ref|YP_004057458.1| phosphoenolpyruvate carboxylase [Oceanithermus profundus DSM 14977]
 gi|313152434|gb|ADR36285.1| Phosphoenolpyruvate carboxylase [Oceanithermus profundus DSM 14977]
          Length = 872

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 16/164 (9%)

Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             +  +G      I E S ++ ++ +E+  +R    +      E       +      R 
Sbjct: 9   RDVDRLGRALGEAIREVSGERLYELVEEVRARTKRLRQRPDDAERAALVRLVASLDLHRA 68

Query: 900 QLL-------QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
           + L         L N+ +    V      K E  FA    T +      +      + R 
Sbjct: 69  EGLTRAFTSFFYLANLAESYHRVHTAADAKGE--FARAARTLASWGVPPE-----EAARL 121

Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
               R L   F+ HP +  +  +R   ++   +++A      +R
Sbjct: 122 ARSMR-LWLTFTAHPTEARRRTVRHH-LERLRDALARGDRAAVR 163


>gi|163857071|ref|YP_001631369.1| hypothetical protein Bpet2759 [Bordetella petrii DSM 12804]
 gi|163260799|emb|CAP43101.1| conserved hypothetical protein [Bordetella petrii]
          Length = 281

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          V L  HS+ S  +G L    +  +  A+     A+TD + +    +    A   G++ I
Sbjct: 8  VDLHCHSTVS--DGVLPPAEVARRAHANGVDVWALTDHDEVGGLAQAGAAARELGMRFI 64


>gi|219849424|ref|YP_002463857.1| helix-turn-helix domain-containing protein [Chloroflexus aggregans
           DSM 9485]
 gi|219543683|gb|ACL25421.1| helix-hairpin-helix motif protein [Chloroflexus aggregans DSM 9485]
          Length = 298

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 11/58 (18%)

Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           ++ +P  +N               +L  + G+G   A  I+    A  PF S++D  +
Sbjct: 230 VEFVPVDINR----------ADRATLITLPGIGPVLADRIIAYREAHGPFKSVDDLIA 277


>gi|331091037|ref|ZP_08339879.1| hypothetical protein HMPREF9477_00522 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330405259|gb|EGG84795.1| hypothetical protein HMPREF9477_00522 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 266

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 1/36 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           +H+ +S  +   S   ++          + ITD  
Sbjct: 6  HMHTEFS-TDAHCSPEEMVLGAIKKGLTTVCITDHM 40


>gi|295695353|ref|YP_003588591.1| GTP-binding protein Obg/CgtA [Bacillus tusciae DSM 2912]
 gi|295410955|gb|ADG05447.1| GTP-binding protein Obg/CgtA [Bacillus tusciae DSM 2912]
          Length = 439

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 15/109 (13%)

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             +L+  + ++       E         +F  E  TFS     E+F V  + V    E+ +
Sbjct: 323  RELIYFVADLLDQMPAQEVGDEEPQGPVFRLEDDTFSVDREGEEFVVRGARV----EK-L 377

Query: 959  LGFYFSGHPLDVYKPI------LRKMGIKGYEESVATIRGNNIRLAAMV 1001
            +       PLD Y+ +      LR+MG+           G+ +R+   V
Sbjct: 378  VRMT----PLDQYEAVHRLARTLRRMGVDEALRRKGARDGDTVRIGGFV 422


>gi|260575517|ref|ZP_05843515.1| PHP domain protein [Rhodobacter sp. SW2]
 gi|259022160|gb|EEW25458.1| PHP  domain protein [Rhodobacter sp. SW2]
          Length = 308

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS+ S  +G L    +  +  A+    +A+TD 
Sbjct: 19 LHTHSTRS--DGVLPPEEVCRRYRAEGYDFLALTDH 52


>gi|256784336|ref|ZP_05522767.1| hypothetical protein SlivT_07608 [Streptomyces lividans TK24]
 gi|289768215|ref|ZP_06527593.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|289698414|gb|EFD65843.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 571

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 41/148 (27%), Gaps = 19/148 (12%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-NLF---SA------LEFSQKACA 64
            +H+ YS  +G   + + + + A      + ITD   N             +  ++ A  
Sbjct: 98  HIHTQYSS-DGKYRVVDQVRQGARHGMDWLVITDHGSNTHAKIGVEKVNPDIREARAAHE 156

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI-------VLLVSTAEGYQRLIELVS 117
             +            +      + GK     +          V     +      + +  
Sbjct: 157 DTLVFQGLEWNIPAAEHGTVFVHPGKHEVSVLKQFETDYDGSVKGAGDSTPANEALAIAG 216

Query: 118 RMYLLDQGKQSVRICLSWLQ-EIGTEGL 144
             +L DQ K+        L      +G+
Sbjct: 217 LSFLADQVKRRKVKDALMLANHPARKGI 244


>gi|169334365|ref|ZP_02861558.1| hypothetical protein ANASTE_00764 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169259082|gb|EDS73048.1| hypothetical protein ANASTE_00764 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 316

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN----NLFSA----LEFSQKACAAG 66
            H++ S  +G  +   ++D  A +    + I+D +    N        ++  + A + G
Sbjct: 15 HCHTTRS--DGLCTPKELIDLAAGEGMNVLTISDHDMIPPNTVEVDGKEVDSVEYAKSIG 72

Query: 67 IQPIIGCQLDID 78
          +  +  C+   D
Sbjct: 73 VNLLKACEFSCD 84


>gi|86606791|ref|YP_475554.1| phospholipase D/competence protein ComEA [Synechococcus sp.
           JA-3-3Ab]
 gi|86555333|gb|ABD00291.1| phospholipase D/competence protein ComEA helix-hairpin-helix domain
           protein [Synechococcus sp. JA-3-3Ab]
          Length = 587

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
           L  + G+G   A+ I+EA    PF SLED   RV      R
Sbjct: 541 LQQLPGIGPALAQRIIEAR---PFSSLEDL-QRVKGIGPAR 577


>gi|21224471|ref|NP_630250.1| hypothetical protein SCO6145 [Streptomyces coelicolor A3(2)]
 gi|4007694|emb|CAA22379.1| hypothetical protein SC1A9.09 [Streptomyces coelicolor A3(2)]
          Length = 572

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 41/148 (27%), Gaps = 19/148 (12%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-NLF---SA------LEFSQKACA 64
            +H+ YS  +G   + + + + A      + ITD   N             +  ++ A  
Sbjct: 99  HIHTQYSS-DGKYRVVDQVRQGARHGMDWLVITDHGSNTHAKIGVEKVNPDIREARAAHE 157

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI-------VLLVSTAEGYQRLIELVS 117
             +            +      + GK     +          V     +      + +  
Sbjct: 158 DTLVFQGLEWNIPAAEHGTVFVHPGKHEVSVLKQFETDYDGSVKGAGDSTPANEALAIAG 217

Query: 118 RMYLLDQGKQSVRICLSWLQ-EIGTEGL 144
             +L DQ K+        L      +G+
Sbjct: 218 LSFLADQVKRRKVKDALMLANHPARKGI 245


>gi|229496467|ref|ZP_04390182.1| aspartyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
 gi|229316607|gb|EEN82525.1| aspartyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
          Length = 553

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 6/54 (11%), Positives = 15/54 (27%), Gaps = 5/54 (9%)

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                   E      G+ + LA  V   ++        + ++   +     +  F
Sbjct: 2    YRTNTCGELRKEHIGSEVTLAGWVSKLRRMG-----AMAFLDLRDRYGITQLVF 50


>gi|183179582|ref|ZP_02957793.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|183012993|gb|EDT88293.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
          Length = 290

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++D+  + +   +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIAQQQYPLQLVN 62


>gi|153215340|ref|ZP_01949953.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153829609|ref|ZP_01982276.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|229520394|ref|ZP_04409819.1| hypothetical protein VIF_000915 [Vibrio cholerae TM 11079-80]
 gi|124114783|gb|EAY33603.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|148874885|gb|EDL73020.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|229342492|gb|EEO07485.1| hypothetical protein VIF_000915 [Vibrio cholerae TM 11079-80]
          Length = 290

 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++D+  + +   +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIAQQQYPLQLVN 62


>gi|329117808|ref|ZP_08246525.1| comEA protein [Streptococcus parauberis NCFD 2020]
 gi|326908213|gb|EGE55127.1| comEA protein [Streptococcus parauberis NCFD 2020]
          Length = 225

 Score = 40.7 bits (94), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G   A  I+EA      F SLED         + ++ LE +
Sbjct: 174 LTKIPGIGEKRAHEIIEARDKMGGFKSLEDL---TKISGIGKKTLEKM 218


>gi|294783833|ref|ZP_06749155.1| DHHA1 domain-containing protein [Fusobacterium sp. 1_1_41FAA]
 gi|294479645|gb|EFG27424.1| DHHA1 domain-containing protein [Fusobacterium sp. 1_1_41FAA]
          Length = 358

 Score = 40.7 bits (94), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 58/196 (29%), Gaps = 38/196 (19%)

Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
           M        +  EQ  ++  L    +  +AD L  AM  K  EEM+ + + F+  +S + 
Sbjct: 1   MADILYDTRLKSEQAPKVIIL----THGDADGLVSAMIVKSFEEMENRSKTFLIMSSMDV 56

Query: 741 ISKTIAVNIFELLAKFAD-------YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            S+      F+ + K+         Y  ++   +          W+K  Y        + 
Sbjct: 57  TSEQT-DKTFDYICKYTSLGPKDRVYILDRPIPS--------IDWLKMKYLAYTNV--IN 105

Query: 794 LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
           ++     K   +  +                   +    +  Y +L   K +        
Sbjct: 106 IDHHLTNKPTLYKDEC----------CCENIFFHWSDKWSAAYLTLEWFKPLVEKA---- 151

Query: 854 MEASADKPFDSLEDFC 869
                   +  LED  
Sbjct: 152 --ERYKNLYKKLEDLA 165


>gi|291288861|ref|YP_003505677.1| glycosyl transferase group 1 [Denitrovibrio acetiphilus DSM
          12809]
 gi|290886021|gb|ADD69721.1| glycosyl transferase group 1 [Denitrovibrio acetiphilus DSM
          12809]
          Length = 797

 Score = 40.7 bits (94), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 12/50 (24%)

Query: 15 QVHSSYS------LLE--GALS----LNNILDKIAADQQPAIAITDTNNL 52
            HS +S       L+  GA       + I +   +     + ITD NN+
Sbjct: 7  HCHSKFSKHPSEWFLQRIGAAESYTEPDFIYNTAKSRGMDFVTITDHNNM 56


>gi|253682325|ref|ZP_04863122.1| histidinol phosphate phosphatase HisJ family [Clostridium botulinum
           D str. 1873]
 gi|253562037|gb|EES91489.1| histidinol phosphate phosphatase HisJ family [Clostridium botulinum
           D str. 1873]
          Length = 263

 Score = 40.7 bits (94), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 16/125 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT----NN--LFSALEF------SQK 61
           L  HS+ S  +   S+ ++           IA T+     NN   +  + F       ++
Sbjct: 5   LHTHSNNSF-DSKASIVDLCKSAINTGITHIAFTEHFSIDNNKKTYGYMNFEKYFEDIKE 63

Query: 62  ACA---AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
           A     + +    G +L    +   K   + K     +    +      G++ L + +S+
Sbjct: 64  AKEIYSSNLNIYTGLELCEPHESPNKFIYELKDLDIDMILGSVHNINNIGHRALCKQLSK 123

Query: 119 MYLLD 123
               D
Sbjct: 124 SETYD 128


>gi|261335024|emb|CBH18018.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 865

 Score = 40.7 bits (94), Expect = 1.5,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 83/272 (30%), Gaps = 31/272 (11%)

Query: 90  KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI--ML 147
           K    +V SI+  V     Y  L   VS   L++  ++  ++ +    E+    +I   L
Sbjct: 459 KQHKASVISILEQVRNE--YCSLCCAVSLPDLVEAFRRKRQVNI----EVAKSAMIRDAL 512

Query: 148 --------TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ 199
                          ++     N  +   +RL+  +      + +   R +  +      
Sbjct: 513 EKQKRLFECAERKLEVEANRAKNLQE--RERLIELRNERLQEMMMEKVRRKREEDL---- 566

Query: 200 VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL---KN 256
           + Q      + L    N+    E   E  + L      T   Q  R  +     +   KN
Sbjct: 567 IAQQNAAARIKLQQERNAEREKEYQRELQERLERAEERTARQQAARDHLLEQRRIRRKKN 626

Query: 257 RSEMVSIFSDLPEALENTVEIARR------CSFILQVHAPILPRFIEKECDDIQKEEENE 310
             E  +    + E  E   EI RR          L        +   +E    +  +  E
Sbjct: 627 AEERQARIERMAEMQEQQSEILRRKYEERDAKVQLVQEERERKQREAQELLAARAAKSQE 686

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
           LR +A     +R  +   A     Q+   RL 
Sbjct: 687 LREQARQRALLREEEVRQAALGQQQEVENRLR 718


>gi|257784608|ref|YP_003179825.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Atopobium parvulum DSM 20469]
 gi|257473115|gb|ACV51234.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Atopobium parvulum DSM 20469]
          Length = 250

 Score = 40.7 bits (94), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              +KGVG   A+ I+     + PF + ED        +     L+  +  
Sbjct: 200 FTKLKGVGEGLAKRIVADRQKNGPFKTTEDLMRVSGIGQKKFDQLKDNIRV 250


>gi|169334970|ref|ZP_02862163.1| hypothetical protein ANASTE_01376 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169257708|gb|EDS71674.1| hypothetical protein ANASTE_01376 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 154

 Score = 40.7 bits (94), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +H+  S  +    L +I+          IAITD 
Sbjct: 7  HIHTDLS-GDSNAKLEDIVHTAIKKNLSEIAITDH 40


>gi|315022849|gb|EFT35873.1| lysyl-tRNA synthetase [Riemerella anatipestifer RA-YM]
          Length = 565

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 17/175 (9%)

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
           ++   R     D   K   E+ +    +   +++T+   +    I          FI+  
Sbjct: 323 MTDAIRKFTGFDITGKTEEELRTFAKSIGIEVDDTMGKGKLIDEI--FGEKCEGNFIQPT 380

Query: 300 CDDIQKEEENEL--RNKAVAGLEVRLAQGAIAKGY--------HAQDYRQRLDFELNVIA 349
                  E + L  ++++  GL  R       K             D R+R + +L + +
Sbjct: 381 FITDYPIEMSPLTKKHRSKEGLTERFELMVCGKEIANAYSELNDPIDQRERFEEQLKL-S 439

Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
                    I  DF++ A +  +P   G G G   +  +    T+   ++  L F
Sbjct: 440 EKGDDEAMFIDQDFLR-ALEYGMPPTAGLGIGMDRLVMFL---TNNASIQEVLFF 490


>gi|86610182|ref|YP_478944.1| phospholipase D/competence protein ComEA [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558724|gb|ABD03681.1| phospholipase D/competence protein ComEA helix-hairpin-helix domain
           protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 591

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
           L  + G+G   A+ I+EA    PF SLED   RV+     R
Sbjct: 545 LEQLPGIGPALAQRIIEAR---PFSSLEDL-QRVNGIGPAR 581


>gi|312796686|ref|YP_004029608.1| PHP domain containing protein (TRPH) [Burkholderia rhizoxinica HKI
           454]
 gi|312168461|emb|CBW75464.1| PHP domain containing protein (TRPH) [Burkholderia rhizoxinica HKI
           454]
          Length = 276

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 86/256 (33%), Gaps = 52/256 (20%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS  ++  + A       A+TD + +    +    A A  ++ + G 
Sbjct: 5   LHCHSTLS--DGRLSPADVARRAADGGVQLWALTDHDEVRGLAQARAAAAALQMRYVTGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY--------QRLIE----------- 114
           ++ +                     +  L +T  G         +RL E           
Sbjct: 63  EISVTWASRTIHVVGLGIDEGHRALVDGLAATRSGRQARAVEIGRRLAEVGIDHAYEGAL 122

Query: 115 -------LVSRMY----LLDQGK---------------QSVRICLSWLQEIGTEGLIMLT 148
                  L+SR +    L+D G                +   +   W       G I+  
Sbjct: 123 RYVSNPDLISRTHFARFLVDAGYAVSTADVFARYLVQNKPGYVPHRWATLEDAMGWILGA 182

Query: 149 GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE 208
           GG +       +  +S   +  L TFK+L G+ + V    H   D+YRE    Q+A    
Sbjct: 183 GGVAVLAHPGRYKYTSLELDTLLSTFKQLGGEAIEVVTGSHT-PDQYRE--YAQVARRFG 239

Query: 209 LPLVATNNSLFLSEED 224
           L   A+  S F +  D
Sbjct: 240 LQ--ASRGSDFHAPGD 253


>gi|86136075|ref|ZP_01054654.1| hypothetical protein MED193_18169 [Roseobacter sp. MED193]
 gi|85826949|gb|EAQ47145.1| hypothetical protein MED193_18169 [Roseobacter sp. MED193]
          Length = 306

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS+ S  +G L    +  +  ++    IA+TD 
Sbjct: 17 LHTHSNRS--DGVLDPAEVCRRYKSEGYDFIALTDH 50


>gi|134296281|ref|YP_001120016.1| phosphotransferase domain-containing protein [Burkholderia
          vietnamiensis G4]
 gi|134139438|gb|ABO55181.1| PHP C-terminal domain protein [Burkholderia vietnamiensis G4]
          Length = 276

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L  HS+ S  +G LS  ++  +  A      A+TD + L  
Sbjct: 5  LHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHDELGG 43


>gi|317490550|ref|ZP_07949026.1| comEA protein [Eggerthella sp. 1_3_56FAA]
 gi|316910330|gb|EFV31963.1| comEA protein [Eggerthella sp. 1_3_56FAA]
          Length = 226

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNR 879
           L A+ GVG +TA  I+    A+ PF ++ED   RV      +
Sbjct: 175 LDALPGVGPSTAEKIVADREANGPFRTVEDL-KRVSGIGDKK 215


>gi|257791408|ref|YP_003182014.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Eggerthella lenta DSM 2243]
 gi|325831532|ref|ZP_08164786.1| comEA protein [Eggerthella sp. HGA1]
 gi|257475305|gb|ACV55625.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Eggerthella lenta DSM 2243]
 gi|325486786|gb|EGC89234.1| comEA protein [Eggerthella sp. HGA1]
          Length = 226

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNR 879
           L A+ GVG +TA  I+    A+ PF ++ED   RV      +
Sbjct: 175 LDALPGVGPSTAEKIVADREANGPFRTVEDL-KRVSGIGDKK 215


>gi|313205755|ref|YP_004044932.1| lysyl-tRNA synthetase [Riemerella anatipestifer DSM 15868]
 gi|312445071|gb|ADQ81426.1| lysyl-tRNA synthetase [Riemerella anatipestifer DSM 15868]
 gi|325336803|gb|ADZ13077.1| Lysyl-tRNA synthetase (class II) [Riemerella anatipestifer RA-GD]
          Length = 566

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 17/175 (9%)

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
           ++   R     D   K   E+ +    +   +++T+   +    I          FI+  
Sbjct: 324 MTDAIRKFTGFDITGKTEEELRTFAKSIGIEVDDTMGKGKLIDEI--FGEKCEGNFIQPT 381

Query: 300 CDDIQKEEENEL--RNKAVAGLEVRLAQGAIAKGY--------HAQDYRQRLDFELNVIA 349
                  E + L  ++++  GL  R       K             D R+R + +L + +
Sbjct: 382 FITDYPIEMSPLTKKHRSKEGLTERFELMVCGKEIANAYSELNDPIDQRERFEEQLKL-S 440

Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
                    I  DF++ A +  +P   G G G   +  +    T+   ++  L F
Sbjct: 441 EKGDDEAMFIDQDFLR-ALEYGMPPTAGLGIGMDRLVMFL---TNNASIQEVLFF 491


>gi|229525788|ref|ZP_04415193.1| hypothetical protein VCA_003424 [Vibrio cholerae bv. albensis
          VL426]
 gi|229339369|gb|EEO04386.1| hypothetical protein VCA_003424 [Vibrio cholerae bv. albensis
          VL426]
          Length = 290

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++D+  + +   +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIALQQYPLQLVN 62


>gi|288931772|ref|YP_003435832.1| PHP domain protein [Ferroglobus placidus DSM 10642]
 gi|288894020|gb|ADC65557.1| PHP domain protein [Ferroglobus placidus DSM 10642]
          Length = 212

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 25/171 (14%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA-----------LEFSQKAC 63
            +HS+YS  +G   ++ I+ K    +   I I D ++               +E      
Sbjct: 5   HIHSTYS--DGKGKIDEIVRKAMERKLKIICIADHSSEHPLGLTKKKAEKRSIEIEMAEQ 62

Query: 64  AAGIQPIIGCQLDIDMQDNLKMT-----------NQGKTPFPTVPSIVLLVSTAEGYQRL 112
             G++ + G +  I     ++             +   TP      +   + T E    L
Sbjct: 63  KYGVKVLNGIECGILENGRVEKPEFEFDLVIASIHSYLTPEEYYRRLRECIKTQE-IHVL 121

Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
             L S M  LD       + +  L +     + + +   + P+D       
Sbjct: 122 GHLHSEMVSLDGRIPEYDLEIIDLAKENCVAIEINSYHRAPPLDVIEEAGR 172


>gi|238062946|ref|ZP_04607655.1| hypothetical protein MCAG_03912 [Micromonospora sp. ATCC 39149]
 gi|237884757|gb|EEP73585.1| hypothetical protein MCAG_03912 [Micromonospora sp. ATCC 39149]
          Length = 557

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
            VHS YS  +    +   + + A      + +TD  N+
Sbjct: 68  HVHSQYS-NDAMYPVATQVQRAARYGLDWLVVTDHGNV 104


>gi|291336918|gb|ADD96447.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426]
          Length = 121

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 45/130 (34%), Gaps = 21/130 (16%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGA-----------LSLNNILDKIAADQQPAIAITDTNNLF 53
           +++ P F      S YSL +                ++I+     ++   + + D +++ 
Sbjct: 1   MKQIPLF-----KSHYSLGKSILTLDKPEDSDPSGPDSIISICKENKIKNLYLVD-DSMS 54

Query: 54  SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
             L+    +    I    G ++         +  + +    T    ++     +GY+RLI
Sbjct: 55  GFLQGYLNSKDEKINFNFGLRMTFC----ADIEIKDEDSRKTNCKFIIFAKNKQGYKRLI 110

Query: 114 ELVSRMYLLD 123
           ++ +      
Sbjct: 111 KISTDAACKG 120


>gi|296123210|ref|YP_003630988.1| DNA-binding protein [Planctomyces limnophilus DSM 3776]
 gi|296015550|gb|ADG68789.1| Helix-hairpin-helix DNA-binding class 1 [Planctomyces limnophilus
           DSM 3776]
          Length = 150

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 834 RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             +     + G+G T AR I+       PF S++D    V  + L  +++E  
Sbjct: 84  ANWIEFLQLDGIGETLARRIVADRDERGPFQSVDDL---VRVRGLGEKMIERF 133


>gi|327400293|ref|YP_004341132.1| hypothetical protein Arcve_0384 [Archaeoglobus veneficus SNP6]
 gi|327315801|gb|AEA46417.1| protein of unknown function DUF655 [Archaeoglobus veneficus SNP6]
          Length = 192

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           L  + G+G  T   I++    +PF S +D  SRV   +   +++ + +
Sbjct: 129 LELLPGIGKKTMWAILDERKKEPFKSFDDIASRVKGLQRPEKLIINRI 176


>gi|291531075|emb|CBK96660.1| histidinol phosphate phosphatase HisJ family [Eubacterium siraeum
          70/3]
          Length = 273

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            HS+ S  +G+     ++ +         ++TD 
Sbjct: 11 HNHSNLSP-DGSNDPEEMVRRAIELGIRYYSLTDH 44


>gi|242373375|ref|ZP_04818949.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus
           epidermidis M23864:W1]
 gi|242348738|gb|EES40340.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus
           epidermidis M23864:W1]
          Length = 570

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIRDMIEANIAKGYQFMVITDH 369


>gi|117165216|emb|CAJ88773.1| putative metal-dependent phosphoesterase (PHP family)
          [Streptomyces ambofaciens ATCC 23877]
          Length = 310

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS+ S  +GALS    L          +A+TD 
Sbjct: 17 LHTHSNRS--DGALSPEESLRHYRDAGYDFVALTDH 50


>gi|327275223|ref|XP_003222373.1| PREDICTED: endonuclease/exonuclease/phosphatase family
           domain-containing protein 1-like isoform 2 [Anolis
           carolinensis]
          Length = 519

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
           L +I+G+    A  I+E   +  PF S+ED   
Sbjct: 138 LMSIRGITEKIAHGIVEYRKEHGPFKSIEDLVK 170


>gi|327275221|ref|XP_003222372.1| PREDICTED: endonuclease/exonuclease/phosphatase family
           domain-containing protein 1-like isoform 1 [Anolis
           carolinensis]
          Length = 556

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
           L +I+G+    A  I+E   +  PF S+ED   
Sbjct: 138 LMSIRGITEKIAHGIVEYRKEHGPFKSIEDLVK 170


>gi|291394670|ref|XP_002713802.1| PREDICTED: endonuclease/exonuclease/phosphatase family domain
           containing 1 [Oryctolagus cuniculus]
          Length = 568

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 146 LMSVRGLTEKMALSIVDYRREHGPFRSVEDLVR 178


>gi|22299882|ref|NP_683129.1| hypothetical protein tll2339 [Thermosynechococcus elongatus BP-1]
 gi|22296067|dbj|BAC09891.1| tll2339 [Thermosynechococcus elongatus BP-1]
          Length = 565

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
           L  + GVG+  A  I+ A   KPF SL D  +      +  ++LE 
Sbjct: 516 LETLPGVGSKLAAEIIRAREHKPFQSLADLDA---VPGVGPKLLER 558


>gi|153004169|ref|YP_001378494.1| phosphotransferase domain-containing protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027742|gb|ABS25510.1| PHP domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 589

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
             H+++S  +G  SL  +     A     + +TD +   
Sbjct: 359 HCHTNWS--DGRASLEEMARAAEALGVEYLTVTDHSVTA 395


>gi|229828594|ref|ZP_04454663.1| hypothetical protein GCWU000342_00658 [Shuttleworthia satelles DSM
           14600]
 gi|229793188|gb|EEP29302.1| hypothetical protein GCWU000342_00658 [Shuttleworthia satelles DSM
           14600]
          Length = 267

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 69/228 (30%), Gaps = 35/228 (15%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-------------NLFSALEF 58
           V L  H+  S      ++  +    +      + I+D               NL  A   
Sbjct: 4   VDLHTHTIASGHGSTATIGQMARAASERGLRLLGISDHGPATPGAAFSSYFQNLAFAPRE 63

Query: 59  SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
                  G++ + G + +I     L + N        V + +     +  Y         
Sbjct: 64  H-----FGVRLLYGVEANILDGGGLDLDNSVLARLDYVIASMHRPPRSVIYHG------- 111

Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE-KRLLTFKK- 176
               D      R    +++ +    + ++    +          +   AE K +L   + 
Sbjct: 112 --RDDIEAYRDRNTKDYIEAMSNPLVRIIGHPDNSQFPYCVHRLTDAAAECKVILEVNEA 169

Query: 177 -LFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSE 222
            L  D  +    R  G D  +  + +++L     +PL+ +++S     
Sbjct: 170 SLGPDGYH----RVAGLDTEQNYRILIKLCKKKGIPLLISSDSHGPDR 213


>gi|260776103|ref|ZP_05884998.1| hypothetical protein VIC_001487 [Vibrio coralliilyticus ATCC
          BAA-450]
 gi|260607326|gb|EEX33591.1| hypothetical protein VIC_001487 [Vibrio coralliilyticus ATCC
          BAA-450]
          Length = 283

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          L  H++ S  +G L  N ++D+        +AITD + +       Q
Sbjct: 5  LHSHTTAS--DGRLPANELIDRALGFDIDVLAITDHDTVDGLEIAHQ 49


>gi|284034795|ref|YP_003384726.1| PHP domain-containing protein [Kribbella flavida DSM 17836]
 gi|283814088|gb|ADB35927.1| PHP domain protein [Kribbella flavida DSM 17836]
          Length = 583

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            +H+ +S  +G   + +     AA     + ITD   
Sbjct: 106 HIHTQFSS-DGMYRVVDQARHAAAYGLDWLVITDHGG 141


>gi|15606300|ref|NP_213679.1| hypothetical protein aq_993 [Aquifex aeolicus VF5]
 gi|2983500|gb|AAC07078.1| putative protein [Aquifex aeolicus VF5]
          Length = 343

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 4/41 (9%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAA-DQQPAIAITDT 49
          S+    VH+ +S  +      + + K         + +TD 
Sbjct: 44 SYA-FHVHTQFSY-DSLGKPED-VKKAREICGLDYVIVTDH 81


>gi|332108547|gb|EGJ09771.1| hypothetical protein RBXJA2T_05548 [Rubrivivax benzoatilyticus JA2]
          Length = 104

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 16/38 (42%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
           L  +KG+G   +  I+EA     F S  D   RV    
Sbjct: 34  LETVKGIGPGLSAKILEARMAGAFKSWADMVDRVPGIG 71


>gi|291002976|ref|ZP_06560949.1| hypothetical protein SeryN2_00440 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 329

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             HS +S  +G   +  + +         + +TD 
Sbjct: 100 HTHSDWS--DGGSPIEEMAETARDLGHEWMVLTDH 132


>gi|212224226|ref|YP_002307462.1| hypothetical protein TON_1077 [Thermococcus onnurineus NA1]
 gi|212009183|gb|ACJ16565.1| phosphohydrolase [Thermococcus onnurineus NA1]
          Length = 216

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H++YS  +G  S+   +          + I+D 
Sbjct: 6  LHTHTTYS--DGTGSVPENIAAAEQKGLRLLGISDH 39


>gi|134100034|ref|YP_001105695.1| hypothetical protein SACE_3496 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912657|emb|CAM02770.1| putative histidinol phosphatase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 323

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             HS +S  +G   +  + +         + +TD 
Sbjct: 94  HTHSDWS--DGGSPIEEMAETARDLGHEWMVLTDH 126


>gi|15897650|ref|NP_342255.1| hypothetical protein SSO0750 [Sulfolobus solfataricus P2]
 gi|284174976|ref|ZP_06388945.1| hypothetical protein Ssol98_10011 [Sulfolobus solfataricus 98/2]
 gi|6015726|emb|CAB57553.1| hypothetical protein [Sulfolobus solfataricus P2]
 gi|13813917|gb|AAK41045.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261602419|gb|ACX92022.1| Protein of unknown function DUF655 [Sulfolobus solfataricus 98/2]
          Length = 208

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%)

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             ++L  +  +G  T R I+E    KPF+S +D  SR+  K +   ++E ++ 
Sbjct: 119 RLHALELLPNIGKKTLRIILEERKKKPFESFKDIESRIGVKDVASILVERIIK 171


>gi|153004247|ref|YP_001378572.1| phosphotransferase domain-containing protein [Anaeromyxobacter
          sp. Fw109-5]
 gi|152027820|gb|ABS25588.1| PHP domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 259

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 14 LQVHSSYSLLEG-ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          L VHS +S   G  L+    L +        +  TD N L    E        GI  ++G
Sbjct: 5  LHVHSHHS--RGSTLAPREALRRAKQAGLDGVVFTDLNTLDGLEEIRAAGREEGILALVG 62

Query: 73 CQLDIDMQDNL 83
           ++  D    L
Sbjct: 63 VEVATDHGHYL 73


>gi|187928075|ref|YP_001898562.1| PHP domain-containing protein [Ralstonia pickettii 12J]
 gi|187724965|gb|ACD26130.1| PHP domain protein [Ralstonia pickettii 12J]
          Length = 286

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L  HS+ S  +G L+ + +  + AA      A+TD + +  
Sbjct: 14 LHCHSTVS--DGMLAPHEVAARAAAHGVTLWALTDHDEVGG 52


>gi|73976315|ref|XP_865627.1| PREDICTED: hypothetical protein XP_860534 isoform 3 [Canis
           familiaris]
          Length = 569

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +I+G+    A  I++      PF S+ED   
Sbjct: 147 LMSIRGLTEKMAVSIVDYRREHGPFRSVEDLVR 179


>gi|73976313|ref|XP_539516.2| PREDICTED: hypothetical protein XP_539516 isoform 2 [Canis
           familiaris]
          Length = 564

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +I+G+    A  I++      PF S+ED   
Sbjct: 147 LMSIRGLTEKMAVSIVDYRREHGPFRSVEDLVR 179


>gi|212710794|ref|ZP_03318922.1| hypothetical protein PROVALCAL_01862 [Providencia alcalifaciens
          DSM 30120]
 gi|212686491|gb|EEB46019.1| hypothetical protein PROVALCAL_01862 [Providencia alcalifaciens
          DSM 30120]
          Length = 245

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          V L  H+  S      ++N    + AA      AITD  
Sbjct: 4  VDLHAHTIAS-THAFSTVNEYFAEAAACGMKLFAITDHG 41


>gi|207111598|ref|ZP_03245760.1| DNA polymerase III subunit alpha [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 43

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 851 RHIMEASADKPFDSLEDFCSRVDSKK 876
           ++I+E  A   + SLEDF SRVD  K
Sbjct: 1   KNIIEERAKGDYKSLEDFISRVDFSK 26


>gi|206901694|ref|YP_002250631.1| PHP domain, putative [Dictyoglomus thermophilum H-6-12]
 gi|206740797|gb|ACI19855.1| PHP domain, putative [Dictyoglomus thermophilum H-6-12]
          Length = 249

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 12 VHLQVHSSYSLL-EGALSLNNILDKIAADQQPAIAITDTN 50
          V L +H+  S   +  +S   I+++        + ITD +
Sbjct: 6  VDLHIHTILSPCGDWDMSPKKIVERAKEVGLSVMGITDHH 45


>gi|220907422|ref|YP_002482733.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Cyanothece sp. PCC 7425]
 gi|219864033|gb|ACL44372.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Cyanothece sp. PCC 7425]
          Length = 585

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDF 868
           L A+ G+G  TA+ ++ A ++KPF SL+D 
Sbjct: 536 LDALPGIGPKTAKAMIAARSEKPFASLDDL 565


>gi|313609175|gb|EFR84853.1| DNA Polymerase X family [Listeria monocytogenes FSL F2-208]
          Length = 454

 Score = 40.4 bits (93), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 223 LHMHTTWS--DGAYAIPEMIEVCIAKGYEYMVITDHG 257


>gi|153005481|ref|YP_001379806.1| phosphotransferase domain-containing protein [Anaeromyxobacter
          sp. Fw109-5]
 gi|152029054|gb|ABS26822.1| PHP domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 266

 Score = 40.4 bits (93), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
              VH+S S  +   S   ++++  A     + +TD + +
Sbjct: 4  AEYHVHTSASY-DSRASPAELVERALAAGLDVVFVTDHDTI 43


>gi|282163124|ref|YP_003355509.1| putative phosphatase, PHP family [Methanocella paludicola SANAE]
 gi|282155438|dbj|BAI60526.1| putative phosphatase, PHP family [Methanocella paludicola SANAE]
          Length = 226

 Score = 40.4 bits (93), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          L VHS++S  +G  S+ +IL   AA     +AITD N         +
Sbjct: 9  LHVHSNFS-KDGLSSVEDILRAAAAKGLAGLAITDHNTTAGGRRALE 54


>gi|225174708|ref|ZP_03728706.1| polysaccharide deacetylase [Dethiobacter alkaliphilus AHT 1]
 gi|225169835|gb|EEG78631.1| polysaccharide deacetylase [Dethiobacter alkaliphilus AHT 1]
          Length = 355

 Score = 40.4 bits (93), Expect = 1.8,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 98/303 (32%), Gaps = 39/303 (12%)

Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID-------RAFFFN 162
           ++L  + +  +   QG       +  L+E G +  I+     +G +        +A  F+
Sbjct: 5   RQLYRVQAGAFSSRQG---AEEQVKNLKEAGFDAFIISPAPENGDLSGQKLYRVQAGAFS 61

Query: 163 SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
           S + A++++   K+   D  +++ Q   G     E+  + +     +P  + N+S  +S+
Sbjct: 62  SKERAKEQVRRLKEAGFDAFFISPQPPEGRVE-PETPAIYVGQQLIIPF-SENDSPSISK 119

Query: 223 --EDYEAHDVLMAVAHSTVVSQ-----KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTV 275
              +     + +         Q      +  +         R+  V    DL   + N  
Sbjct: 120 VVNEGILKQIALTFDAGWYYDQTIPLLDELDKYNVKSTFFPRALWVRDNPDLTREIVNRG 179

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
            I                     +   + + E  E   ++   +E    +          
Sbjct: 180 HIVE------------NHSLTHADMSQMNETEIREELGESTRIIEEITNRRPYLFRPPYG 227

Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            Y +R+   L ++A+  +    +   D   WA +       G+   A  +    L  +  
Sbjct: 228 AYNERM---LKILAQEGYPYTIMWTVDSHDWAHEIG-----GKPITADYLVNRVLDNSSP 279

Query: 396 DPL 398
           + +
Sbjct: 280 NGI 282


>gi|149916746|ref|ZP_01905248.1| hypothetical protein PPSIR1_05278 [Plesiocystis pacifica SIR-1]
 gi|149822463|gb|EDM81852.1| hypothetical protein PPSIR1_05278 [Plesiocystis pacifica SIR-1]
          Length = 482

 Score = 40.4 bits (93), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 10/97 (10%)

Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
           I+   + A+          +N             +  L+A+ GVG   A  I+    + P
Sbjct: 339 IEVLIEAAQAGGYDQKVLDLNA----------ACHSELSALPGVGWVIANRILSRRQESP 388

Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
           F S++               L               R
Sbjct: 389 FLSVDGLAEVEGISAQTVEALRRHCQVQRPKSLLDPR 425


>gi|303244271|ref|ZP_07330608.1| Protein of unknown function DUF655 [Methanothermococcus okinawensis
           IH1]
 gi|302485398|gb|EFL48325.1| Protein of unknown function DUF655 [Methanothermococcus okinawensis
           IH1]
          Length = 194

 Score = 40.4 bits (93), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 29/90 (32%), Gaps = 20/90 (22%)

Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
           E           N +K  +F  +      ++                     SL  + G+
Sbjct: 95  ELFYVIKEAVKRNEKKFIQFINECGPITNKMH--------------------SLQLLPGI 134

Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSK 875
           G TT   I+E    KPF+S ED   RV   
Sbjct: 135 GKTTMWKIIEEREAKPFESFEDVEKRVHRN 164


>gi|159042535|ref|YP_001541787.1| hypothetical protein Cmaq_1981 [Caldivirga maquilingensis IC-167]
 gi|157921370|gb|ABW02797.1| Protein of unknown function DUF655 [Caldivirga maquilingensis
           IC-167]
          Length = 191

 Score = 40.4 bits (93), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            +SL  +KG+G  T   ++E    KPF+S +DF +R+      R ++E ++
Sbjct: 124 LHSLELLKGIGKKTLNQVLEERVKKPFESFDDFKNRIGINVQ-RLIVERII 173


>gi|313125979|ref|YP_004036249.1| RNA-binding protein [Halogeometricum borinquense DSM 11551]
 gi|312292344|gb|ADQ66804.1| predicted RNA-binding protein [Halogeometricum borinquense DSM
           11551]
          Length = 211

 Score = 40.4 bits (93), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
           L  + G+G     +I++     P++S ED   RV      R VL
Sbjct: 145 LNLLPGIGKKLRNNILDERKRGPYESFEDLEDRVSGLHHPRDVL 188


>gi|222444698|ref|ZP_03607213.1| hypothetical protein METSMIALI_00311 [Methanobrevibacter smithii
          DSM 2375]
 gi|288869764|ref|ZP_05976180.2| PHP family phosphoesterase [Methanobrevibacter smithii DSM 2374]
 gi|222434263|gb|EEE41428.1| hypothetical protein METSMIALI_00311 [Methanobrevibacter smithii
          DSM 2375]
 gi|288860518|gb|EFC92816.1| PHP family phosphoesterase [Methanobrevibacter smithii DSM 2374]
          Length = 213

 Score = 40.4 bits (93), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 17 HSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          HS +S  +G L  + +  + A      IAITD 
Sbjct: 2  HSLFS--DGELLPSELARRAANLNHEVIAITDH 32


>gi|148642123|ref|YP_001272636.1| hypothetical protein Msm_0063 [Methanobrevibacter smithii ATCC
          35061]
 gi|148551140|gb|ABQ86268.1| amidohydrolase (PHP family) [Methanobrevibacter smithii ATCC
          35061]
          Length = 213

 Score = 40.4 bits (93), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 17 HSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          HS +S  +G L  + +  + A      IAITD 
Sbjct: 2  HSLFS--DGELLPSELARRAANLNHEVIAITDH 32


>gi|328956846|ref|YP_004374232.1| putative phosphoesterase [Carnobacterium sp. 17-4]
 gi|328673170|gb|AEB29216.1| putative phosphoesterase [Carnobacterium sp. 17-4]
          Length = 270

 Score = 40.4 bits (93), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 2/87 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VHS +S  +G  S+  +LD    +    I+  D +   +     +     GI  + G 
Sbjct: 5   LHVHSEFS--DGYDSIETVLDLAQQNGIEMISFVDHDTTATYPAAKEAGEKRGITVVPGI 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           ++        +  +     +      +
Sbjct: 63  EISSYDFKRSRKVHILGYNYRYPTHHI 89


>gi|302335767|ref|YP_003800974.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Olsenella uli DSM 7084]
 gi|301319607|gb|ADK68094.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Olsenella uli DSM 7084]
          Length = 229

 Score = 40.4 bits (93), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNR 879
           L  + GVG  TA+ I+E    + PF S ED   RV      +
Sbjct: 179 LKGLSGVGEATAKSIVEDRGKNGPFSSPEDLM-RVSGIGEKK 219


>gi|299066883|emb|CBJ38078.1| conserved exported protein of unknown function [Ralstonia
           solanacearum CMR15]
          Length = 105

 Score = 40.4 bits (93), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
           +L  + GVG   ++ I+E  A + P+    DF +RV      
Sbjct: 32  ALETLSGVGPKRSKAIVEERAKNGPYKDAADFMARVPGIGEK 73


>gi|288818365|ref|YP_003432713.1| hypothetical protein HTH_1054 [Hydrogenobacter thermophilus TK-6]
 gi|288787765|dbj|BAI69512.1| hypothetical protein HTH_1054 [Hydrogenobacter thermophilus TK-6]
 gi|308751958|gb|ADO45441.1| PHP domain protein [Hydrogenobacter thermophilus TK-6]
          Length = 367

 Score = 40.4 bits (93), Expect = 1.9,   Method: Composition-based stats.
 Identities = 6/39 (15%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
             +H+ +S  +      +++  + A     + +TD +N
Sbjct: 44 EFHLHTQFSY-DSLGKPEDVIASMQAQDIDFVIVTDHDN 81


>gi|108761686|ref|YP_631664.1| ComE protein [Myxococcus xanthus DK 1622]
 gi|108465566|gb|ABF90751.1| comE protein [Myxococcus xanthus DK 1622]
          Length = 138

 Score = 40.4 bits (93), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
           LA + GVG   AR ++EA  +   F S +D  +         + L +    GA    G 
Sbjct: 78  LALLPGVGRALARSLVEAREEQGGFKSWDDVDAVRGVGSAKLQTLRAATALGAPPDAGP 136


>gi|17545635|ref|NP_519037.1| putative ComEA-related signal peptide protein [Ralstonia
           solanacearum GMI1000]
 gi|17427928|emb|CAD14618.1| putative signal peptide protein [Ralstonia solanacearum GMI1000]
          Length = 105

 Score = 40.4 bits (93), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
           +L  + GVG   ++ I+E  A + P+    DF +RV      
Sbjct: 32  ALETLSGVGPKRSKAIVEERAKNGPYKDAADFMARVPGIGEK 73


>gi|160881032|ref|YP_001560000.1| HisJ family histidinol phosphate phosphatase [Clostridium
          phytofermentans ISDg]
 gi|160429698|gb|ABX43261.1| histidinol phosphate phosphatase HisJ family [Clostridium
          phytofermentans ISDg]
          Length = 274

 Score = 40.4 bits (93), Expect = 1.9,   Method: Composition-based stats.
 Identities = 6/36 (16%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
            H+++S  +   S  +++++  +       ITD  
Sbjct: 7  HTHTNFS-TDSDYSPESMIERAISLGLSTYCITDHM 41


>gi|300176945|emb|CBK25514.2| unnamed protein product [Blastocystis hominis]
          Length = 274

 Score = 40.4 bits (93), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +H+++S  +G  +   +++         + I D + +   L   +     GI
Sbjct: 2  HMHTNFS--DGVKTPAELIEYAKQRHVDIMCINDHDTVKGVLN-VKTMKVEGI 51


>gi|146296211|ref|YP_001179982.1| putative hydrolase [Caldicellulosiruptor saccharolyticus DSM
          8903]
 gi|257096841|sp|A4XIQ6|Y1188_CALS8 RecName: Full=Putative hydrolase Csac_1188
 gi|145409787|gb|ABP66791.1| PHP C-terminal domain protein [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 239

 Score = 40.4 bits (93), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 1/39 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          V    H+  S      +L  ++ +        I ITD  
Sbjct: 5  VETHCHTIAS-GHAYNTLEEMVAEAKNKGLKGICITDHG 42


>gi|323190203|gb|EFZ75479.1| hypothetical protein ECRN5871_1358 [Escherichia coli RN587/1]
          Length = 553

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 47/144 (32%), Gaps = 23/144 (15%)

Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
               A+   EA  +  +D   DF  R    +  +        + + +       Q     
Sbjct: 427 RQAAAQRFNEAEHNGSYDDFRDFSRRQPLTQQQKDAARQRYQSASPE-------QRQAVH 479

Query: 906 DNIQKYAQWVEKNRTNKH--ENIFAHEKGTFSDKIT---LEKFSVENSSVRFENEQRVLG 960
           + IQ   Q  ++    +   ++    ++  F +K+     ++ +  N + R  NEQR   
Sbjct: 480 EKIQANPQNQQRREAARQRIQSASPEQRQVFREKVQESRPQRLNDSNHTARLNNEQR--- 536

Query: 961 FYFSGHPLDVYKPILRKMGIKGYE 984
                      +  L + G +  E
Sbjct: 537 --------SAARERLSERGARRLE 552


>gi|307245309|ref|ZP_07527397.1| Tryptophan synthase alpha chain [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254258|ref|ZP_07536099.1| Tryptophan synthase alpha chain [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258720|ref|ZP_07540452.1| Tryptophan synthase alpha chain [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853650|gb|EFM85867.1| Tryptophan synthase alpha chain [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862805|gb|EFM94758.1| Tryptophan synthase alpha chain [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867071|gb|EFM98927.1| Tryptophan synthase alpha chain [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 269

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 40/125 (32%), Gaps = 10/125 (8%)

Query: 33  LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
            ++ A     A+ I D   L S  EF+Q A   GIQ +  C  + D     ++    +  
Sbjct: 115 FNRCAESGVDAVLIADVPVLASE-EFTQAAKKHGIQSVFICPPNADQATIERIARLTEGY 173

Query: 93  FPTVPSI-VLLVSTAEGYQRLIELV-------SRMYLLDQGKQSVRICLSWLQEIGTEGL 144
              V    V         + L  L+       S   L   G          L  +G +G 
Sbjct: 174 TYLVSRAGVTSAENQAHAKNLDNLIESLKRSNSAPILQGFGIAKPEQVKEALA-LGCDGA 232

Query: 145 IMLTG 149
           I  + 
Sbjct: 233 ISGSA 237


>gi|297568783|ref|YP_003690127.1| PHP domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296924698|gb|ADH85508.1| PHP domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 223

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNL-FSALEFSQKA 62
          L  H  +S  +G L     L ++A     A+AITD    +NL F      Q A
Sbjct: 4  LHTHCLFS--DGELVPAEHLRRVAVLGYQAVAITDHADSSNLDFIIPRLVQAA 54


>gi|253688395|ref|YP_003017585.1| PHP domain protein [Pectobacterium carotovorum subsp. carotovorum
          PC1]
 gi|251754973|gb|ACT13049.1| PHP domain protein [Pectobacterium carotovorum subsp. carotovorum
          PC1]
          Length = 296

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L  H++ S  +G L+   ++++    +   +AITD +     
Sbjct: 16 LHSHTTAS--DGVLTPTALVNRAINMRVSVLAITDHDTTRGL 55


>gi|300691880|ref|YP_003752875.1| hypothetical protein RPSI07_2236 [Ralstonia solanacearum PSI07]
 gi|299078940|emb|CBJ51600.1| conserved protein of unknown function, PHP domain-like [Ralstonia
          solanacearum PSI07]
          Length = 286

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 1  LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          + +    +P    L  HS+ S  +G L+   +  + AA      A+TD + +  
Sbjct: 1  MLKRSASAPINADLHCHSTVS--DGLLAPREVAARAAAHGVTLWALTDHDEVGG 52


>gi|257790010|ref|YP_003180616.1| PHP domain-containing protein [Eggerthella lenta DSM 2243]
 gi|257473907|gb|ACV54227.1| PHP domain protein [Eggerthella lenta DSM 2243]
          Length = 262

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 9/114 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VHS+ S  +G+ +   +L++ A      +A T+ +         +     G+Q + G 
Sbjct: 5   LHVHSTMS--DGSDTFEQVLEQAAQRGVERLAFTNHDTTAGLTAARELGERLGVQVVGGI 62

Query: 74  QLDIDMQDNLKMTN-------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
           ++     +  +  +       +G      +    L    A    +L  LV   Y
Sbjct: 63  EVSAYDFERGRKVHILGLGVEEGAPALAALCGSTLERRHANSLWQLDRLVEAGY 116


>gi|330506687|ref|YP_004383115.1| PHP domain-containing protein [Methanosaeta concilii GP-6]
 gi|328927495|gb|AEB67297.1| PHP domain protein [Methanosaeta concilii GP-6]
          Length = 221

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          L VHS+ S  +G   +  IL   A      ++ITD + L  + +  +      +  I
Sbjct: 5  LHVHSNCS--DGRDDVRTILRAAARRDLDGLSITDHDTLRGSQQAMKIIQEDKLDLI 59


>gi|315645942|ref|ZP_07899063.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Paenibacillus vortex V453]
 gi|315278703|gb|EFU42017.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Paenibacillus vortex V453]
          Length = 222

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + G+G   A+ I++      PF S+ D    ++ K +  ++LE +
Sbjct: 172 LMELPGIGEAKAQAIIDYRKQFGPFRSIADL---MNVKGIGPKMLEKM 216


>gi|254780313|ref|YP_003064726.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039990|gb|ACT56786.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 227

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSL----DFLAQRGVKVDLSLIPFDDHETYHLLTT 614
           +M+ I      KFDFL L +   +++++    D +        +     D   T   L  
Sbjct: 105 DMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMS-LCE 163

Query: 615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
             T    ++ + G    ++  Q     DI+ L+
Sbjct: 164 AATFFALEMLNIGGDFLVKTFQGGTTNDILCLL 196


>gi|307717400|gb|ADN88753.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 6/87 (6%)

Query: 58  FSQKACAA-GIQPIIGCQLDIDMQDNLKMTN----QGKTPFPTVPSIVLLVSTAEGYQRL 112
           F  +A A  G + I   +   D+  +  + +                 +   TA G + L
Sbjct: 144 FDAEATAYLGWKLIKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNL 203

Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEI 139
            +L++   + +   +  RI  S L+++
Sbjct: 204 FKLITMSNI-NYFYRVPRIPRSQLKKL 229


>gi|323140375|ref|ZP_08075305.1| comEA protein [Phascolarctobacterium sp. YIT 12067]
 gi|322415131|gb|EFY05920.1| comEA protein [Phascolarctobacterium sp. YIT 12067]
          Length = 218

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 19/49 (38%)

Query: 822 NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
           N+  +     ++     L  + G+G   A+ I+E      F S +D   
Sbjct: 151 NSSMMQSVRINSASAGELQQLPGIGPALAQRIVETRNSGRFTSADDLLR 199


>gi|108757053|ref|YP_634709.1| competence protein comEA [Myxococcus xanthus DK 1622]
 gi|108460933|gb|ABF86118.1| competence protein comEA [Myxococcus xanthus DK 1622]
          Length = 116

 Score = 40.0 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
           L  + GVG   A+ I+E    +PF  +E+   
Sbjct: 42  LDLLPGVGEKAAQRIIEHRQKRPFKRVEELVR 73


>gi|325830364|ref|ZP_08163821.1| PHP domain protein [Eggerthella sp. HGA1]
 gi|325487831|gb|EGC90269.1| PHP domain protein [Eggerthella sp. HGA1]
          Length = 262

 Score = 40.0 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 9/114 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VHS+ S  +G+ +   +L++ A      +A T+ +         +     G+Q + G 
Sbjct: 5   LHVHSTMS--DGSDTFEQVLEQAAQRGVERLAFTNHDTTAGLTAARELGERLGVQVVGGI 62

Query: 74  QLDIDMQDNLKMTN-------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
           ++     +  +  +       +G      +    L    A    +L  LV   Y
Sbjct: 63  EVSAYDFERGRKVHILGLGVEEGAPALAALCGSTLERRHANSLWQLDRLVEAGY 116


>gi|309389878|gb|ADO77758.1| PHP domain protein [Halanaerobium praevalens DSM 2228]
          Length = 246

 Score = 40.0 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 14 LQVHSSYS----LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
          L +HS  S    LL   ++   I+ K  A +   +A+TD N+  +A  F        ++ 
Sbjct: 8  LHLHSVLSPCGDLL---MTPAQIIKKAKAKRIDVLALTDHNSAENAEVFKYYCEKYNLKF 64

Query: 70 IIGC 73
          I   
Sbjct: 65 IPAM 68


>gi|227827663|ref|YP_002829443.1| hypothetical protein M1425_1392 [Sulfolobus islandicus M.14.25]
 gi|229584867|ref|YP_002843369.1| hypothetical protein M1627_1442 [Sulfolobus islandicus M.16.27]
 gi|238619834|ref|YP_002914660.1| Protein of unknown function DUF655 [Sulfolobus islandicus M.16.4]
 gi|227459459|gb|ACP38145.1| Protein of unknown function DUF655 [Sulfolobus islandicus M.14.25]
 gi|228019917|gb|ACP55324.1| Protein of unknown function DUF655 [Sulfolobus islandicus M.16.27]
 gi|238380904|gb|ACR41992.1| Protein of unknown function DUF655 [Sulfolobus islandicus M.16.4]
          Length = 208

 Score = 40.0 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 28/52 (53%)

Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            ++L  +  +G  T R I+E    KPF+S +D  +R+  K +   ++E ++ 
Sbjct: 120 LHALELLPNIGKKTLRIILEERKKKPFESFKDIETRIGIKDVASILVERIIK 171


>gi|262194522|ref|YP_003265731.1| PHP domain protein [Haliangium ochraceum DSM 14365]
 gi|262077869|gb|ACY13838.1| PHP domain protein [Haliangium ochraceum DSM 14365]
          Length = 287

 Score = 40.0 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          V L  H++ S  +GA S   ++D  +      +A TD 
Sbjct: 15 VDLHCHTTRS--DGAWSPEQVIDHASEIGVRVLAFTDH 50


>gi|239627937|ref|ZP_04670968.1| PHP domain-containing protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239518083|gb|EEQ57949.1| PHP domain-containing protein [Clostridiales bacterium 1_7_47FAA]
          Length = 239

 Score = 40.0 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 14 LQVHSSYSLL-EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          L +HS  S   +  ++  NI    A     A+A+TD N   +   F   A   G+  + G
Sbjct: 8  LHIHSCLSPCGDDDMTPANIAGMAALKGLEAVALTDHNTCRNCPAFMAAAEEYGVLAVPG 67

Query: 73 CQLDIDMQ 80
           +++   +
Sbjct: 68 MEINTSEE 75


>gi|323477449|gb|ADX82687.1| Protein of unknown function DUF655 [Sulfolobus islandicus HVE10/4]
          Length = 197

 Score = 40.0 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 28/52 (53%)

Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            ++L  +  +G  T R I+E    KPF+S +D  +R+  K +   ++E ++ 
Sbjct: 109 LHALELLPNIGKKTLRIILEERKKKPFESFKDIETRIGIKDVASILVERIIK 160


>gi|15920669|ref|NP_376338.1| hypothetical protein ST0457 [Sulfolobus tokodaii str. 7]
 gi|15621452|dbj|BAB65447.1| 222aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 222

 Score = 40.0 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 26/52 (50%)

Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            ++L  +  +G  T R I+E    +PF   +D  +RV  K +   ++E ++ 
Sbjct: 123 LHALELLPNIGKKTLRIILEERKKQPFVDFKDIENRVGIKDVVGLLIERIIK 174


>gi|332170841|gb|AEE20096.1| hypothetical protein Krodi_2114 [Krokinobacter diaphorus 4H-3-7-5]
          Length = 116

 Score = 40.0 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE-YEANFFP 1033
               + +   +V+ +   T  G+R+ + TF +   +  +   FP
Sbjct: 6    NKTVEIYGYLVTAKNTGTSNGNRMSFGTFLDYNGDWIDTVHFP 48


>gi|329729974|gb|EGG66365.1| PHP domain protein [Staphylococcus epidermidis VCU144]
          Length = 569

 Score = 40.0 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAIT 47
           L +H++YS  +GA S+  +++         + IT
Sbjct: 336 LHMHTTYS--DGAFSIKEMIEANIEKGYEFMVIT 367


>gi|227830360|ref|YP_002832140.1| Protein of unknown function DUF655 [Sulfolobus islandicus L.S.2.15]
 gi|284997866|ref|YP_003419633.1| hypothetical protein LD85_1597 [Sulfolobus islandicus L.D.8.5]
 gi|227456808|gb|ACP35495.1| Protein of unknown function DUF655 [Sulfolobus islandicus L.S.2.15]
 gi|284445761|gb|ADB87263.1| hypothetical protein LD85_1597 [Sulfolobus islandicus L.D.8.5]
          Length = 208

 Score = 40.0 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 28/52 (53%)

Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            ++L  +  +G  T R I+E    KPF+S +D  +R+  K +   ++E ++ 
Sbjct: 120 LHALELLPNIGKKTLRIILEERKKKPFESFKDIETRIGIKDVASILVERIIK 171


>gi|291287250|ref|YP_003504066.1| PHP domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884410|gb|ADD68110.1| PHP domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 221

 Score = 40.0 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+++S  +G L  +    +   D    +A TD 
Sbjct: 7  LHTHTTFS--DGVLIPSESARRAEIDGYAGMAFTDH 40


>gi|229579178|ref|YP_002837576.1| Protein of unknown function DUF655 [Sulfolobus islandicus
           Y.G.57.14]
 gi|229582070|ref|YP_002840469.1| Protein of unknown function DUF655 [Sulfolobus islandicus
           Y.N.15.51]
 gi|228009892|gb|ACP45654.1| Protein of unknown function DUF655 [Sulfolobus islandicus
           Y.G.57.14]
 gi|228012786|gb|ACP48547.1| Protein of unknown function DUF655 [Sulfolobus islandicus
           Y.N.15.51]
          Length = 197

 Score = 40.0 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 28/52 (53%)

Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            ++L  +  +G  T R I+E    KPF+S +D  +R+  K +   ++E ++ 
Sbjct: 109 LHALELLPNIGKKTLRIILEERKKKPFESFKDIETRIGIKDVASILVERIIK 160


>gi|119720336|ref|YP_920831.1| phosphotransferase domain-containing protein [Thermofilum pendens
           Hrk 5]
 gi|119525456|gb|ABL78828.1| PHP C-terminal domain protein [Thermofilum pendens Hrk 5]
          Length = 452

 Score = 40.0 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           L VHS +S  +G  S+  +    +      + +TD N +
Sbjct: 145 LHVHSVHS--DGDASVAELARIASGKGLDFVVLTDHNTV 181


>gi|167750976|ref|ZP_02423103.1| hypothetical protein EUBSIR_01961 [Eubacterium siraeum DSM 15702]
 gi|167656155|gb|EDS00285.1| hypothetical protein EUBSIR_01961 [Eubacterium siraeum DSM 15702]
          Length = 273

 Score = 40.0 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            HS+ S  +G+     ++ +         ++TD 
Sbjct: 11 HNHSNLSP-DGSNDPEEMVRRATELGIRYYSLTDH 44


>gi|110636887|ref|YP_676715.1| family X DNA polymerase IV [Cytophaga hutchinsonii ATCC 33406]
 gi|110279568|gb|ABG57754.1| DNA polymerase IV, family X [Cytophaga hutchinsonii ATCC 33406]
          Length = 563

 Score = 40.0 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             HS+YS  +G  +L  +  +  A       I+D 
Sbjct: 331 HNHSTYS--DGKHTLEEMAKECMALGYAYFGISDH 363


>gi|298246251|ref|ZP_06970057.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297553732|gb|EFH87597.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 287

 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAAD-QQPAIAITDTNNLFSALEF 58
           +HS+YS  +G+ ++  IL  +  +     IAITD + +  +L  
Sbjct: 53 HMHSTYS--DGSATIEQILQHVEHNTDLDVIAITDHDVIEGSLRA 95


>gi|254284238|ref|ZP_04959206.1| PHP C-terminal domain protein [gamma proteobacterium NOR51-B]
 gi|219680441|gb|EED36790.1| PHP C-terminal domain protein [gamma proteobacterium NOR51-B]
          Length = 269

 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 17 HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          HS+ S  +GAL    +L ++        A+TD + +    E    
Sbjct: 2  HSTAS--DGALRPRELLARLREAGVERFALTDHDTIAGFSELRDA 44


>gi|114883631|ref|YP_740321.1| hypothetical protein pLB1_p23 [Plasmid pLB1]
 gi|113734272|dbj|BAF30448.1| hypothetical protein [Plasmid pLB1]
          Length = 935

 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 31 NILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           ++         AIAITD + +   + F ++A A    P
Sbjct: 39 KLVAACRERGIQAIAITDHHCMT-FVPFIRQAAAEETGP 76


>gi|319762259|ref|YP_004126196.1| hypothetical protein Alide_1549 [Alicycliphilus denitrificans BC]
 gi|330825814|ref|YP_004389117.1| hypothetical protein Alide2_3260 [Alicycliphilus denitrificans
           K601]
 gi|317116820|gb|ADU99308.1| hypothetical protein Alide_1549 [Alicycliphilus denitrificans BC]
 gi|329311186|gb|AEB85601.1| hypothetical protein Alide2_3260 [Alicycliphilus denitrificans
           K601]
          Length = 106

 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 15/39 (38%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
           L  IKG+G   +  I+   A   F    D  SRV     
Sbjct: 34  LDGIKGIGPALSSRILAERAKGRFQDWRDLISRVKGIGP 72


>gi|225873244|ref|YP_002754703.1| PHP domain protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793638|gb|ACO33728.1| PHP domain protein [Acidobacterium capsulatum ATCC 51196]
          Length = 580

 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H+  +  +G  ++  + +         IAITD 
Sbjct: 348 HMHTDAT--DGRNTIREMAEAALERGYQYIAITDH 380


>gi|219851490|ref|YP_002465922.1| PHP domain protein [Methanosphaerula palustris E1-9c]
 gi|219545749|gb|ACL16199.1| PHP domain protein [Methanosphaerula palustris E1-9c]
          Length = 203

 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +H+SY+  +G  S++    +      P +A T+ 
Sbjct: 17 HIHTSYT--DGHNSVDEYCRRAGELGIPLVAFTEH 49


>gi|325519091|gb|EGC98579.1| putative phosphoesterase [Burkholderia sp. TJI49]
          Length = 256

 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L  HS+ S  +G LS  ++  +  A      A+TD + +  
Sbjct: 5  LHCHSNVS--DGLLSPADVARRAQAGGVTLWALTDHDEVGG 43


>gi|323474721|gb|ADX85327.1| conserved hypothetical protein [Sulfolobus islandicus REY15A]
          Length = 197

 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            ++L  +  +G  T R I+E    KPF+S +D  +R+  K L   ++E ++ 
Sbjct: 109 LHALELLPNIGKKTLRIILEERKKKPFESFKDIETRIGIKDLASILVERIIK 160


>gi|291557456|emb|CBL34573.1| histidinol phosphate phosphatase HisJ family [Eubacterium siraeum
          V10Sc8a]
          Length = 273

 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            HS+ S  +G+     ++ +         ++TD 
Sbjct: 11 HNHSNLSP-DGSNDPEEMVRRATELGIRYYSLTDH 44


>gi|225012344|ref|ZP_03702780.1| PHP domain protein [Flavobacteria bacterium MS024-2A]
 gi|225003321|gb|EEG41295.1| PHP domain protein [Flavobacteria bacterium MS024-2A]
          Length = 365

 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L +H+ +S  +GA+  +  +++   +    IA+T+ 
Sbjct: 39 LHIHTVFS--DGAVWPSIRVEEARKEGLDLIAMTEH 72


>gi|169335214|ref|ZP_02862407.1| hypothetical protein ANASTE_01622 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169257952|gb|EDS71918.1| hypothetical protein ANASTE_01622 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 294

 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H++ S  +G  S   I+ K   +    I+ITD + +  A +  +     GI+ I   
Sbjct: 5  LHIHTNNS--DGDDSTKEIIKKTRDNDIELISITDHDTVM-AYDDLKYINTDGIKIIPAV 61

Query: 74 QLDIDMQDNLK 84
          +L       ++
Sbjct: 62 ELSYAYNHEMR 72


>gi|90415551|ref|ZP_01223485.1| metal dependent phosphoesterase [marine gamma proteobacterium
          HTCC2207]
 gi|90332874|gb|EAS48044.1| metal dependent phosphoesterase [marine gamma proteobacterium
          HTCC2207]
          Length = 273

 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
            H++ S  +G L    +++     +   ++ITD + L 
Sbjct: 6  HCHTTAS--DGTLDPAALINLAREREIDMLSITDHDTLA 42


>gi|254478999|ref|ZP_05092357.1| hypothetical protein CDSM653_1326 [Carboxydibrachium pacificum DSM
           12653]
 gi|214035079|gb|EEB75795.1| hypothetical protein CDSM653_1326 [Carboxydibrachium pacificum DSM
           12653]
          Length = 524

 Score = 40.0 bits (92), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
             L VHS++S  +G  +   I +         + ITD  +L
Sbjct: 194 AQLHVHSNFS--DGKKTPLEIANTYKGMGYKVVYITDHTDL 232


>gi|222099038|ref|YP_002533606.1| PHP C-terminal domain protein precursor [Thermotoga neapolitana DSM
           4359]
 gi|221571428|gb|ACM22240.1| PHP C-terminal domain protein precursor [Thermotoga neapolitana DSM
           4359]
          Length = 546

 Score = 40.0 bits (92), Expect = 2.4,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 57/181 (31%), Gaps = 35/181 (19%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           + +L  H+SYS  +G+ + +   +         +AITD      A  F+QK        +
Sbjct: 21  YGNLHSHTSYS--DGSGTPDQAYEYAKNY-LDVLAITDH-----AYYFAQKINGKTKPYL 72

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPS------IVLLVSTAEG-----YQRLIEL---- 115
                +   +D   +  QG      V        +  +    E      Y+ L+E     
Sbjct: 73  TKLAAERHTEDGKFVALQGFEWTAGVGHINVYESLEWIDRNRESSLEGFYRWLVEHRKLA 132

Query: 116 -----VSRMYLLDQGKQSVRICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
                +S     D  +          L E+G          SSG +     + +  +A  
Sbjct: 133 QFNHPISTFGTFDSFRYFPEADEYVNLIEVGNGNW------SSGDVINPEMYGNYILALN 186

Query: 170 R 170
           R
Sbjct: 187 R 187


>gi|115399146|ref|XP_001215162.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114192045|gb|EAU33745.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 292

 Score = 40.0 bits (92), Expect = 2.4,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 20/156 (12%)

Query: 228 HDVLMAVAHSTVVS--QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
           H +  A ++ T        R    P   L   ++++  + D+P AL+ ++E  +     L
Sbjct: 51  HHIDAADSYGTEREVGIAIRESGIPREQLFITTKVLEGWKDVPGALDASLERLQLDYVDL 110

Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            +       ++     DIQ          A  GLE   A G       +   R  L+  L
Sbjct: 111 YLLHN---PYVIPNLTDIQS---------AWKGLEAVKATGKARSIGVSNFQRNHLEAIL 158

Query: 346 NV------IARMKFSGYFLIVADFIQWAKKNNIPVG 375
                   I ++++  Y     DFI W ++  I V 
Sbjct: 159 ETCSVVPAINQLEYHPYLQRSHDFIPWMRERGIEVS 194


>gi|15679404|ref|NP_276521.1| DNA polymerase II small subunit [Methanothermobacter
            thermautotrophicus str. Delta H]
 gi|13431445|sp|O27456|DP2S_METTH RecName: Full=DNA polymerase II small subunit; Short=Pol II
 gi|2622517|gb|AAB85882.1| DNA polymerase delta small subunit [Methanothermobacter
            thermautotrophicus str. Delta H]
          Length = 482

 Score = 40.0 bits (92), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 17/60 (28%), Gaps = 8/60 (13%)

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +P L+  G     +         + +  MV   +   T+   R   +   +   E     
Sbjct: 120  RPELK--GHIPIADLRGGED--VVSIIGMVNDVRN--TKNNHR--IIELEDDTGEISVVV 171


>gi|325265025|ref|ZP_08131752.1| putative histidinol-phosphatase (HolPase) [Clostridium sp. D5]
 gi|324029715|gb|EGB91003.1| putative histidinol-phosphatase (HolPase) [Clostridium sp. D5]
          Length = 272

 Score = 40.0 bits (92), Expect = 2.5,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           +H+ +S  +   +  ++++   A     I ITD N
Sbjct: 7  HMHTDFSS-DSEAAPRDMIEGAIAKGMRRICITDHN 41


>gi|218782931|ref|YP_002434249.1| PHP domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218764315|gb|ACL06781.1| PHP domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 208

 Score = 40.0 bits (92), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 23/68 (33%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH+        +    ++ K          +T+   L+   E  + A   GI+   G 
Sbjct: 5  LHVHTWPKSQCSQIEPVELVLKAKELGLDGFCLTEHQVLWDLEEVRKLAADNGIKIFRGN 64

Query: 74 QLDIDMQD 81
          ++     D
Sbjct: 65 EITTAQGD 72


>gi|226307622|ref|YP_002767582.1| hypothetical protein RER_41350 [Rhodococcus erythropolis PR4]
 gi|226186739|dbj|BAH34843.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 284

 Score = 40.0 bits (92), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 11/89 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  +   ++   A      +AITD +      E +  A  AG+  + G 
Sbjct: 5   LHTHSNAS--DGTDTPAALMRAAADAGLDVVAITDHDTTSGWAEAAH-ALPAGVSLVRGM 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++  +         +G+  +P    ++  
Sbjct: 62  EMSCE--------GRGERGWPVAVHLLAY 82


>gi|84489086|ref|YP_447318.1| hypothetical protein Msp_0259 [Methanosphaera stadtmanae DSM 3091]
 gi|84372405|gb|ABC56675.1| hypothetical protein Msp_0259 [Methanosphaera stadtmanae DSM 3091]
          Length = 122

 Score = 40.0 bits (92), Expect = 2.5,   Method: Composition-based stats.
 Identities = 7/53 (13%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                E   +   N +++  ++ +     T+ G+    +T ++ +   +   FP
Sbjct: 33   LSVNEIDKSKIDNQVKVTGIIENYT--ITKTGTM--IITLNDGSNVIKVVIFP 81


>gi|326922202|ref|XP_003207340.1| PREDICTED: endonuclease/exonuclease/phosphatase family
           domain-containing protein 1-like, partial [Meleagris
           gallopavo]
          Length = 471

 Score = 40.0 bits (92), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
           L +I+G+    A  I++   +  PF S+ED   
Sbjct: 52  LMSIRGITEKIANSIVDYRKEHGPFKSIEDLVR 84


>gi|305663449|ref|YP_003859737.1| Protein of unknown function DUF655 [Ignisphaera aggregans DSM
           17230]
 gi|304378018|gb|ADM27857.1| Protein of unknown function DUF655 [Ignisphaera aggregans DSM
           17230]
          Length = 216

 Score = 40.0 bits (92), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             +SL  I G+G  T   I+E    K FDS +D   R+      +  ++ ++ 
Sbjct: 124 RMHSLELIPGIGKKTLAMILEERKKKKFDSFDDIRKRLKINDPAKLFVDRIIL 176


>gi|224045591|ref|XP_002197268.1| PREDICTED: similar to Endonuclease/exonuclease/phosphatase family
           domain-containing protein 1 [Taeniopygia guttata]
          Length = 790

 Score = 40.0 bits (92), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
           L +I+G+    A  I++   +  PF S+ED   
Sbjct: 370 LMSIRGITEKIANSIVDYRKEHGPFKSIEDLVR 402


>gi|118086197|ref|XP_418838.2| PREDICTED: similar to KIAA1706 protein [Gallus gallus]
          Length = 558

 Score = 40.0 bits (92), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
           L +I+G+    A  I++   +  PF S+ED   
Sbjct: 139 LMSIRGITEKIANSIVDYRKEHGPFKSIEDLVR 171


>gi|120609510|ref|YP_969188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax citrulli AAC00-1]
 gi|120587974|gb|ABM31414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax citrulli AAC00-1]
          Length = 519

 Score = 40.0 bits (92), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 1/131 (0%)

Query: 110 QRLIELVSRMYLLD-QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
             L+ +V+ +  L    + ++  C       G   LI   G     +D A   ++ + A 
Sbjct: 320 HNLLAVVASLRALGIPLEHALWACAQLAPVPGRMELIHEPGQPLVAVDYAHTPDALEQAL 379

Query: 169 KRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
           + L    +  G RL+         DR +   + ++A      ++ T+++          H
Sbjct: 380 QALRPVAEQRGGRLWCVFGCGGNRDRAKRPLMGRIAQQRADAVIVTSDNPRNEAPGAILH 439

Query: 229 DVLMAVAHSTV 239
           ++L+     T 
Sbjct: 440 EILLGTVAGTT 450


>gi|46578510|ref|YP_009318.1| glycosyl transferase domain-containing protein [Desulfovibrio
          vulgaris str. Hildenborough]
 gi|46447921|gb|AAS94577.1| conserved domain protein/glycosyl transferase, group 1 family
          protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232437|gb|ADP85291.1| glycosyl transferase group 1 [Desulfovibrio vulgaris RCH1]
          Length = 816

 Score = 40.0 bits (92), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 12/58 (20%)

Query: 12 VHLQVHSSYS------LL------EGALSLNNILDKIAADQQPAIAITDTNNLFSALE 57
          V L VHS +S      LL      E   +   I D         + ITD N +  +LE
Sbjct: 8  VDLHVHSRFSTRPSQWLLQKLGCSESYTAPQAIYDIARKRGMDLVTITDHNTIAGSLE 65


>gi|330834389|ref|YP_004409117.1| phosphotransferase domain-containing protein [Metallosphaera
          cuprina Ar-4]
 gi|329566528|gb|AEB94633.1| phosphotransferase domain-containing protein [Metallosphaera
          cuprina Ar-4]
          Length = 220

 Score = 39.6 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          V   VHS +S  +G      ++++ +      IA+TD + 
Sbjct: 3  VDFHVHSVFS--DGKHDPEVLVNQASKMNI-FIALTDHDT 39


>gi|120603907|ref|YP_968307.1| glycosyl transferase, group 1 [Desulfovibrio vulgaris DP4]
 gi|120564136|gb|ABM29880.1| glycosyl transferase, group 1 [Desulfovibrio vulgaris DP4]
          Length = 816

 Score = 39.6 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 12/58 (20%)

Query: 12 VHLQVHSSYS------LL------EGALSLNNILDKIAADQQPAIAITDTNNLFSALE 57
          V L VHS +S      LL      E   +   I D         + ITD N +  +LE
Sbjct: 8  VDLHVHSRFSTRPSQWLLQKLGCSESYTAPQAIYDIARKRGMDLVTITDHNTIAGSLE 65


>gi|21228640|ref|NP_634562.1| hypothetical protein MM_2538 [Methanosarcina mazei Go1]
 gi|20907140|gb|AAM32234.1| Conserved hypothetical protein [Methanosarcina mazei Go1]
          Length = 243

 Score = 39.6 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
           L  + G+G      I++      F S +D   R+ S     +V+   +     D F   R
Sbjct: 172 LELLPGIGKKLMWSIIDERKKGDFKSFQDIRERIPSLHDPAKVISHRIEEELKDDFIKYR 231


>gi|317047784|ref|YP_004115432.1| PHP domain-containing protein [Pantoea sp. At-9b]
 gi|316949401|gb|ADU68876.1| PHP domain protein [Pantoea sp. At-9b]
          Length = 245

 Score = 39.6 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-NLFSALEFS 59
          V L +H+  S      +L++ + +   +     AITD   ++  A  + 
Sbjct: 4  VDLHMHTVAS-THAYSTLHDYVAQAKQNGLKLFAITDHGPDMADAPHYW 51


>gi|328704995|ref|XP_001950403.2| PREDICTED: alpha-aminoadipic semialdehyde synthase,
           mitochondrial-like [Acyrthosiphon pisum]
          Length = 924

 Score = 39.6 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 51/164 (31%), Gaps = 16/164 (9%)

Query: 264 FSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
           FS  P  AL NTV  A+     L+ H  I               + + L   +  G   R
Sbjct: 649 FSWFPRGALVNTVAEAK----YLRDHEIIDI--PAGGALMNSTTDLDFLPGFSFEGFPNR 702

Query: 323 LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF-IQWAKKNNIPVGPGRGSG 381
            +         A + +  L      I    FS   +I+    +  +K +      G    
Sbjct: 703 DSTRYAKLYGIAAEVQTMLR---GTIRYKGFSEMMMILQKLRLIESKDHAALHPNGPDIT 759

Query: 382 AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
              +    L I +ID     + +E  L+     +    +D   D
Sbjct: 760 WCQLICTLLEINEID-----MFYENMLSKVADKIGPSVLDKVMD 798


>gi|296533687|ref|ZP_06896241.1| 1-deoxy-D-xylulose-5-phosphate synthase [Roseomonas cervicalis ATCC
           49957]
 gi|296265986|gb|EFH12057.1| 1-deoxy-D-xylulose-5-phosphate synthase [Roseomonas cervicalis ATCC
           49957]
          Length = 650

 Score = 39.6 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 104/313 (33%), Gaps = 44/313 (14%)

Query: 171 LLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
           L  F+K F  R Y         +++  +    LA     P VA  ++      D   HDV
Sbjct: 363 LDAFQKRFPKRTY----DVGIAEQHAVTFAAGLATEGIKPFVAIYSTFLQRAYDQVMHDV 418

Query: 231 LMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEAL----ENTVEIARRCSFIL 285
             A+ +  V    DR  +   D      +  ++    LP+ +     + VE+A   +   
Sbjct: 419 --ALQNLPVRFALDRAGLVGADGATHAGAYDIAYLGCLPQMVLMAPSDEVELAHMVATSA 476

Query: 286 QVHA-PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                PI  RF   E   +Q       R + +     R+ +        +  Y  RL   
Sbjct: 477 AYDEGPIAFRFPRGEGFGLQPVPA---RGEVMEIGRGRVLREGTKVALLS--YGARLQEC 531

Query: 345 LNVIARMKFSGYFLIVAD----------FI-QWAKKNNIPVGPGRGSGAGS--VTAYALT 391
           L     +   G    VAD           + + A+++ + V    GS  G   +  + L 
Sbjct: 532 LKAAEELAARGLSCTVADARFAKPLDTALVERLAREHEVMVTIEEGSVGGFGALVMHHLA 591

Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
           +         L F     PDR            D+ +   +Y +   G +  A + T G+
Sbjct: 592 LRG--AFDHGLRFRPMALPDR--------YIDHDKPER--QYAEA--GLDAAAIVATVGA 637

Query: 452 LQAKAALRDVGRA 464
               AAL    RA
Sbjct: 638 ALGDAALTQPARA 650


>gi|229089391|ref|ZP_04220664.1| hypothetical protein bcere0021_2400 [Bacillus cereus Rock3-42]
 gi|228693940|gb|EEL47630.1| hypothetical protein bcere0021_2400 [Bacillus cereus Rock3-42]
          Length = 929

 Score = 39.6 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 14 LQVHSSYS--LLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L +H+  S    + +++    +D+        +A+TD N 
Sbjct: 17 LHLHTPASKCFRDQSVTPQQWVDRCLEQGLNIVAVTDHNT 56


>gi|289582043|ref|YP_003480509.1| PHP domain protein [Natrialba magadii ATCC 43099]
 gi|289531596|gb|ADD05947.1| PHP domain protein [Natrialba magadii ATCC 43099]
          Length = 260

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 9/42 (21%)

Query: 15 QVHSSYS---LLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
           VHS+YS    L G      ++    +     I   D  N+ 
Sbjct: 5  HVHSNYSDGSFLRG------MVRAAESADLDGIGFADHCNVA 40


>gi|326421338|gb|ADZ73697.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Moschus moschiferus]
          Length = 224

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 122 LMSVRGLTEKMAVSIVDYRREHGPFRSVEDLVR 154


>gi|326421336|gb|ADZ73696.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Elaphurus davidianus]
          Length = 224

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 122 LMSVRGLTEKMAVSIVDYRREHGPFRSVEDLVR 154


>gi|326421334|gb|ADZ73695.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Platanista gangetica]
          Length = 222

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 120 LMSVRGLTEKMAVSIVDYRREHGPFRSVEDLVR 152


>gi|326421332|gb|ADZ73694.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Kogia sima]
          Length = 222

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 120 LMSVRGLTEKMAVSIVDYRREHGPFRSVEDLVR 152


>gi|326421330|gb|ADZ73693.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Balaenoptera omurai]
          Length = 222

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 120 LMSVRGLTEKMAVSIVDYRREHGPFRSVEDLVR 152


>gi|326421318|gb|ADZ73687.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Delphinus capensis]
          Length = 222

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 120 LMSVRGLTEKMAVSIVDYRREHGPFRSVEDLVR 152


>gi|326421316|gb|ADZ73686.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Lipotes vexillifer]
          Length = 222

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 120 LMSVRGLTEKMAVSIVDYRREHGPFRSVEDLVR 152


>gi|326322020|gb|ADZ54010.1| endonuclease/exonuclease/phosphatase family domain containing 1
           [Mesoplodon densirostris]
 gi|326421314|gb|ADZ73685.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Neophocaena phocaenoides]
 gi|326421320|gb|ADZ73688.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Grampus griseus]
 gi|326421322|gb|ADZ73689.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Stenella attenuata]
 gi|326421324|gb|ADZ73690.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Tursiops aduncus]
 gi|326421326|gb|ADZ73691.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Stenella coeruleoalba]
 gi|326421328|gb|ADZ73692.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Sousa chinensis]
 gi|326421340|gb|ADZ73698.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Delphinapterus leucas]
          Length = 222

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 120 LMSVRGLTEKMAVSIVDYRREHGPFRSVEDLVR 152


>gi|315187051|gb|EFU20808.1| hypothetical protein SpithDRAFT_0416 [Spirochaeta thermophila DSM
           6578]
          Length = 453

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +H+ YS      + +    + A          D ++L +A E  + +   G+  I+G +
Sbjct: 51  HIHTCYSF--SPYTPSMAALRAAEAGLAVAGSVDHDSLAAAEEMVEASRFLGLGGIVGFE 108

Query: 75  LDIDMQDNLKMTNQGKTPF 93
           L +  ++      +   P 
Sbjct: 109 LRVSFRNTPFGDRKLNNPD 127


>gi|301766552|ref|XP_002918698.1| PREDICTED: endonuclease/exonuclease/phosphatase family
           domain-containing protein 1-like [Ailuropoda
           melanoleuca]
 gi|281339468|gb|EFB15052.1| hypothetical protein PANDA_007201 [Ailuropoda melanoleuca]
          Length = 569

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 147 LMSVRGLTEKMAVSIVDYRREHGPFRSVEDLVR 179


>gi|77735773|ref|NP_001029581.1| endonuclease/exonuclease/phosphatase family domain-containing
           protein 1 [Bos taurus]
 gi|122145064|sp|Q3MHJ7|EEPD1_BOVIN RecName: Full=Endonuclease/exonuclease/phosphatase family
           domain-containing protein 1
 gi|75948260|gb|AAI05213.1| Endonuclease/exonuclease/phosphatase family domain containing 1
           [Bos taurus]
 gi|296488465|gb|DAA30578.1| endonuclease/exonuclease/phosphatase family domain-containing
           protein 1 [Bos taurus]
          Length = 571

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 149 LMSVRGLTEKMAVSIVDYRREHGPFRSVEDLVR 181


>gi|45825823|gb|AAS77580.1| KIAA1706 protein [Bos taurus]
          Length = 362

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 145 LMSVRGLTEKMAVSIVDYRREHGPFRSVEDLVR 177


>gi|225619746|ref|YP_002721003.1| putative hydrolase [Brachyspira hyodysenteriae WA1]
 gi|225214565|gb|ACN83299.1| putative hydrolase [Brachyspira hyodysenteriae WA1]
          Length = 233

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 11/42 (26%)

Query: 14 LQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  H+     +YS      +++ +++        A+AITD  
Sbjct: 7  LHTHTLVSEHAYS------TVDEMVNSANEKGFLALAITDHG 42


>gi|254383014|ref|ZP_04998369.1| PHP domain containing protein [Streptomyces sp. Mg1]
 gi|194341914|gb|EDX22880.1| PHP domain containing protein [Streptomyces sp. Mg1]
          Length = 304

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS  S  +GALS   +           +A+TD 
Sbjct: 14 LHTHSDQS--DGALSPEEVGRLYREAGYDFLAVTDH 47


>gi|327311282|ref|YP_004338179.1| putative nucleotide binding protein [Thermoproteus uzoniensis
           768-20]
 gi|326947761|gb|AEA12867.1| putative nucleotide binding protein [Thermoproteus uzoniensis
           768-20]
          Length = 194

 Score = 39.6 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            +SL  ++G+G    + I+     KPF+S ED   RV
Sbjct: 124 MHSLELLQGIGKKKVQEILAERRKKPFESYEDIRKRV 160


>gi|319440333|ref|ZP_07989489.1| excinuclease ABC subunit B [Corynebacterium variabile DSM 44702]
          Length = 721

 Score = 39.6 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 91/264 (34%), Gaps = 30/264 (11%)

Query: 258 SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
            E+ S+F   P   +   E+          H    P  +EK   DI+ E E+ + +    
Sbjct: 241 DEIDSLFYIHPLTGDVIREV-EEIRIFPATHYVAGPERMEKAMADIRDELEHRVADLENR 299

Query: 318 GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
           G           K   AQ  R R +++L +I ++ +            +++  +      
Sbjct: 300 G-----------KLLEAQRLRMRTEYDLEMIQQVGYCSGIE------NYSRHIDQR---E 339

Query: 378 RGSGAGSVTAYA----LTI---TDIDPLRFSLLFERFLNPDRMSM-PDFDIDFCQDRRDE 429
            GS   ++  Y     LTI   + +   +   +FE  ++  R  +   F +    D R  
Sbjct: 340 SGSAPATLIDYFPDDYLTIIDESHVTVPQIGGMFEGDMSRKRNLVDFGFRLPSALDNRPL 399

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
                 ++ G   V    T G+ +  AA  +    +  P   VD   ++ P D      +
Sbjct: 400 TWEEFDDRKGQ-CVYMSATPGNYEIAAAGGEFVEQVIRPTGLVDPKVEVRPTDGQIDDLI 458

Query: 490 QAIADDSRFREARLADPSVDRLLE 513
           + I      +E  L      R+ E
Sbjct: 459 EQIRQRVEKKERVLVTTLTKRMAE 482


>gi|256544544|ref|ZP_05471917.1| histidinol phosphatase [Anaerococcus vaginalis ATCC 51170]
 gi|256399869|gb|EEU13473.1| histidinol phosphatase [Anaerococcus vaginalis ATCC 51170]
          Length = 264

 Score = 39.6 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L +HS +S  +   +    +     ++   +A TD 
Sbjct: 4  LHLHSHFSF-DSNTNPEENVKSAIKNKIKIMAFTDH 38


>gi|167722536|ref|ZP_02405772.1| DNA polymerase X family protein [Burkholderia pseudomallei DM98]
          Length = 600

 Score = 39.6 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           L  H++ +  +G  SL ++  +        +AITD   +            A
Sbjct: 343 LHAHTNAT--DGRDSLRDMALEARKRGLDYLAITDHARVPGVAHGLDAERLA 392


>gi|320334950|ref|YP_004171661.1| ATP-dependent DNA helicase RecG [Deinococcus maricopensis DSM 21211]
 gi|319756239|gb|ADV67996.1| ATP-dependent DNA helicase RecG [Deinococcus maricopensis DSM 21211]
          Length = 779

 Score = 39.6 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 968  LDVYKPIL-----RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW--VTF 1020
            L   + +L     R    +     V    G  + ++ +VVSK ++  +   ++    VT 
Sbjct: 124  LHTLRDLLHAYPRRHEDRRALPNLVDVEDGQKVTVSGVVVSKNRRTPK--PKMLILEVTL 181

Query: 1021 SEPAKE 1026
             +P  +
Sbjct: 182  EDPYGQ 187


>gi|313623714|gb|EFR93861.1| ComEA family DNA-binding protein [Listeria innocua FSL J1-023]
          Length = 200

 Score = 39.6 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 792 MTLEMDNVEKIKKFCQ---DARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGT 847
           + L     +++  +     +A   + +++   + +   D KV  N      L  + G+G 
Sbjct: 100 LNLAEKLKDEMSIYVYKKGEA--GSEEVVKDDIESSETDKKVNINSATKVDLQQVPGIGD 157

Query: 848 TTARHIME-ASADKPFDSLEDF 868
           + A  I+E    +  F ++ED 
Sbjct: 158 SKATAIIEYREKEGLFQTIEDL 179


>gi|256394002|ref|YP_003115566.1| hypothetical protein Caci_4865 [Catenulispora acidiphila DSM 44928]
 gi|256360228|gb|ACU73725.1| PHP domain protein [Catenulispora acidiphila DSM 44928]
          Length = 332

 Score = 39.6 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +HS +S  +G   +  + +   A       +TD 
Sbjct: 99  HLHSDWS--DGGSPIEEMAEAARALGHRWAVLTDH 131


>gi|167565137|ref|ZP_02358053.1| PHP domain N-terminal region family protein [Burkholderia
           oklahomensis EO147]
          Length = 643

 Score = 39.6 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           L  H++ +  +G  SL ++           +AITD ++             AG
Sbjct: 370 LHAHTNAT--DGQDSLRDMALAARKRGLEYLAITDHSHRLGVAHGLDAERLAG 420


>gi|317125995|ref|YP_004100107.1| metallophosphoesterase [Intrasporangium calvum DSM 43043]
 gi|315590083|gb|ADU49380.1| metallophosphoesterase [Intrasporangium calvum DSM 43043]
          Length = 472

 Score = 39.6 bits (91), Expect = 2.9,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 43/139 (30%), Gaps = 17/139 (12%)

Query: 155 IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY--RESQVVQLAYTHELPLV 212
           +       +   A+      +    D  ++  + HRG +          +L Y  +L LV
Sbjct: 240 VPVFPAIGNHDSADSEGSDDRAQMEDNFHIEERFHRGLETASVLPGLFYRLRYGADLELV 299

Query: 213 ATNNSLFLSEEDYEAHDVLMAVAH-------------STVVSQKDRPRVTPDHYLKNRSE 259
             +    L  ED E H    A  H               ++     P  T     +N  E
Sbjct: 300 CLDT--SLDSEDQEIHRYFQAPKHRDWLRQTFGGRPRRWLIPFSHHPVFTAGPDHQNDEE 357

Query: 260 MVSIFSDLPEALENTVEIA 278
           M   F  L +A    + +A
Sbjct: 358 MRESFEPLFDAAGVRLVLA 376


>gi|156744224|ref|YP_001434353.1| phosphotransferase domain-containing protein [Roseiflexus
          castenholzii DSM 13941]
 gi|156235552|gb|ABU60335.1| PHP domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 300

 Score = 39.6 bits (91), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS+ S  +G LS  +++          +A+TD 
Sbjct: 17 LHTHSTVS--DGELSPEDVVAAYRVQGYDFLALTDH 50


>gi|302337826|ref|YP_003803032.1| PHP domain protein [Spirochaeta smaragdinae DSM 11293]
 gi|301635011|gb|ADK80438.1| PHP domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 237

 Score = 39.6 bits (91), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 14 LQVHSSYSLLEGA-LSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L +HS  S      +S   I+ +  A     +A+TD N   +   F   A  + I PI 
Sbjct: 7  LHIHSCLSPCGSLEMSPARIITEAEAAGLDLVALTDHNCARNLRAFDHAARKSNITPIF 65


>gi|167574903|ref|ZP_02367777.1| PHP domain N-terminal region family protein [Burkholderia
           oklahomensis C6786]
          Length = 680

 Score = 39.6 bits (91), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           L  H++ +  +G  SL ++           +AITD ++             AG
Sbjct: 407 LHAHTNAT--DGQDSLRDMALAARKRGLEYLAITDHSHRLGVAHGLDAERLAG 457


>gi|78044476|ref|YP_361443.1| hypothetical protein CHY_2651 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996591|gb|ABB15490.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 676

 Score = 39.6 bits (91), Expect = 2.9,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 56/199 (28%), Gaps = 47/199 (23%)

Query: 211 LVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYL-----KNRSEMVS-- 262
            VA +    +S +D +A  ++   +A  +    K+    T          ++   ++   
Sbjct: 271 CVAFDEVAGISFKDKDAIQIMKDYMASGSFARGKEEKAATASMVFIGNINQSVDALLKTS 330

Query: 263 -IFSDLPEALENTVEIARRCSFILQ--VHAPILPRFIEKECDDIQKEEENELRN------ 313
            +F   PEA+ N      R  + L         P F   E   I       LR       
Sbjct: 331 HLFEPFPEAIANDTAFFDRIHYYLPGWEIPKFRPEFFTDEYGFITDYLAEFLREMRKRSF 390

Query: 314 -----------------------KAVAGLEVRLAQGAIAKGYHAQDY-------RQRLDF 343
                                  K V+GL   +           ++        R+R+  
Sbjct: 391 SDAFDRYFKLGNNLNQRDVIAVRKTVSGLVKLIYPNGEFDKDDIEEILRYALIGRRRVKE 450

Query: 344 ELNVIARMKFSGYFLIVAD 362
           +L  I  M+F        D
Sbjct: 451 QLKKIGGMEFYDVHFSYID 469


>gi|313884436|ref|ZP_07818197.1| PHP domain protein [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620220|gb|EFR31648.1| PHP domain protein [Eremococcus coleocola ACS-139-V-Col8]
          Length = 489

 Score = 39.6 bits (91), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
             L  H+ +S  +   S   +L +        +AITD N 
Sbjct: 180 TELHSHTLHS--DAQQSTEYLLQQAQEQGIDWLAITDHNT 217


>gi|254974622|ref|ZP_05271094.1| putative phosphatase [Clostridium difficile QCD-66c26]
 gi|255092014|ref|ZP_05321492.1| putative phosphatase [Clostridium difficile CIP 107932]
 gi|255313748|ref|ZP_05355331.1| putative phosphatase [Clostridium difficile QCD-76w55]
 gi|255516430|ref|ZP_05384106.1| putative phosphatase [Clostridium difficile QCD-97b34]
 gi|255649528|ref|ZP_05396430.1| putative phosphatase [Clostridium difficile QCD-37x79]
 gi|260682696|ref|YP_003213981.1| putative phosphatase [Clostridium difficile CD196]
 gi|260686294|ref|YP_003217427.1| putative phosphatase [Clostridium difficile R20291]
 gi|306519658|ref|ZP_07406005.1| putative phosphatase [Clostridium difficile QCD-32g58]
 gi|260208859|emb|CBA61804.1| putative phosphatase [Clostridium difficile CD196]
 gi|260212310|emb|CBE03084.1| putative phosphatase [Clostridium difficile R20291]
          Length = 264

 Score = 39.6 bits (91), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +HSS+S  +G  ++  ++ K        I  TD 
Sbjct: 6  HMHSSFS-TDGKSTMEEMVKKSIELGLEEICFTDH 39


>gi|262191633|ref|ZP_06049811.1| PHP family hydrolase [Vibrio cholerae CT 5369-93]
 gi|262032475|gb|EEY51035.1| PHP family hydrolase [Vibrio cholerae CT 5369-93]
          Length = 290

 Score = 39.6 bits (91), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++D+  + +   +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIAQQLYPLQLVN 62


>gi|307717334|gb|ADN88720.1| DNA polymerase III [Listeria seeligeri]
 gi|307717336|gb|ADN88721.1| DNA polymerase III [Listeria seeligeri]
 gi|307717366|gb|ADN88736.1| DNA polymerase III [Listeria seeligeri]
 gi|307717402|gb|ADN88754.1| DNA polymerase III [Listeria seeligeri]
 gi|307717406|gb|ADN88756.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score = 39.6 bits (91), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 58  FSQKACAA-GIQPIIGCQLDIDMQDNLKMTN----QGKTPFPTVPSIVLLVSTAEGYQRL 112
           F  +A A  G + I   +   D+  +  + +                 +   TA G + L
Sbjct: 144 FDAEATAYLGWKLIKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNL 203

Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEI 139
            +L++   + +   +  RI  S L ++
Sbjct: 204 FKLITMSNI-NYFYRVPRIPRSQLNKL 229


>gi|296451077|ref|ZP_06892819.1| histidinol-phosphatase [Clostridium difficile NAP08]
 gi|296880570|ref|ZP_06904532.1| histidinol-phosphatase [Clostridium difficile NAP07]
 gi|296260084|gb|EFH06937.1| histidinol-phosphatase [Clostridium difficile NAP08]
 gi|296428524|gb|EFH14409.1| histidinol-phosphatase [Clostridium difficile NAP07]
          Length = 264

 Score = 39.6 bits (91), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +HSS+S  +G  ++  ++ K        I  TD 
Sbjct: 6  HMHSSFS-TDGKSTMEEMVKKSIELGLEEICFTDH 39


>gi|126698656|ref|YP_001087553.1| putative phosphatase [Clostridium difficile 630]
 gi|255100108|ref|ZP_05329085.1| putative phosphatase [Clostridium difficile QCD-63q42]
 gi|255305998|ref|ZP_05350170.1| putative phosphatase [Clostridium difficile ATCC 43255]
 gi|115250093|emb|CAJ67913.1| putative histidinol phosphatase/hydrolase, PHP family
          [Clostridium difficile]
          Length = 264

 Score = 39.6 bits (91), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +HSS+S  +G  ++  ++ K        I  TD 
Sbjct: 6  HMHSSFS-TDGKSTMEEMVKKSIELGLEEICFTDH 39


>gi|110634842|ref|YP_675050.1| radical SAM family protein [Mesorhizobium sp. BNC1]
 gi|110285826|gb|ABG63885.1| Radical SAM [Chelativorans sp. BNC1]
          Length = 409

 Score = 39.6 bits (91), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 50/162 (30%), Gaps = 19/162 (11%)

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF-------CQD 808
           +A Y   + + +A++   + +A +    P E         +   + + +F        ++
Sbjct: 245 YASYALQRVYYSAFSPTGHPSAVL----PAEPTPLIREHRLYQTDWLLRFYGFSLPEVEE 300

Query: 809 ARQFNIQIMPPSVNT----PCVDFKVG--DNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
           A    +  +             DF     +      L  + G+G      I+ A      
Sbjct: 301 ALPGGMLDLSIDPKLAWALSHRDFFPVDVNKASRELLLRVPGLGVKAVDRIIAARRHGSL 360

Query: 863 DSLEDFCSRVDSKKLNRR-VLESLVFAGALDCFGYSRMQLLQ 903
             L +      S K  R  VL      G+L      R +L+ 
Sbjct: 361 R-LAELARLTGSLKRVRPFVLTPDWQPGSLLEQPRLRQRLVA 401


>gi|269792732|ref|YP_003317636.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100367|gb|ACZ19354.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 235

 Score = 39.6 bits (91), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           L ++ GVG  TA+ I++   A+ PF  ++D    +  K +  + LE + 
Sbjct: 183 LKSLPGVGDKTAQAIIDYRTANGPFRDVKDL---MKVKGIGPKKLEKMA 228


>gi|239626066|ref|ZP_04669097.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239520296|gb|EEQ60162.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 269

 Score = 39.6 bits (91), Expect = 3.1,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           +H+++S  +    +   ++K        I ITD +
Sbjct: 6  HLHTAFS-GDSDTPVRRQIEKAMELGMKEICITDHH 40


>gi|296125704|ref|YP_003632956.1| PHP domain protein [Brachyspira murdochii DSM 12563]
 gi|296017520|gb|ADG70757.1| PHP domain protein [Brachyspira murdochii DSM 12563]
          Length = 235

 Score = 39.6 bits (91), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 11/42 (26%)

Query: 14 LQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  H+     +YS      ++N +L         A+AITD  
Sbjct: 7  LHTHTIVSEHAYS------TVNEMLQSAKEKGFLALAITDHG 42


>gi|289581691|ref|YP_003480157.1| PHP domain protein [Natrialba magadii ATCC 43099]
 gi|289531244|gb|ADD05595.1| PHP domain protein [Natrialba magadii ATCC 43099]
          Length = 268

 Score = 39.6 bits (91), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           +  L VH++ S  +G+L L  + D  A      +AITD +
Sbjct: 2  PYADLHVHTTRS--DGSLELEAVPDAAARADLRVVAITDHD 40


>gi|226225942|ref|YP_002760048.1| DNA polymerase X family protein [Gemmatimonas aurantiaca T-27]
 gi|226089133|dbj|BAH37578.1| DNA polymerase X family protein [Gemmatimonas aurantiaca T-27]
          Length = 592

 Score = 39.6 bits (91), Expect = 3.1,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS YS  +G  ++  +     A     + ++D 
Sbjct: 351 LHCHSQYS--DGGATIEQMAAAARARGLRYLGVSDH 384


>gi|312137398|ref|YP_004004735.1| DNA polymerase ii small subunit [Methanothermus fervidus DSM 2088]
 gi|311225117|gb|ADP77973.1| DNA polymerase II small subunit [Methanothermus fervidus DSM 2088]
          Length = 470

 Score = 39.6 bits (91), Expect = 3.2,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 12/66 (18%)

Query: 969  DVYKPILRKM--GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            +  + +L K    I   ++       N +++A +V   +   T+K  +   +   +   +
Sbjct: 106  EKLRGLLEKRLGKIVDIKDIGD----NEVKIAGIVNEVRT--TKKNHK--IIELEDKTGK 157

Query: 1027 YEANFF 1032
                 F
Sbjct: 158  --CIVF 161


>gi|326386746|ref|ZP_08208367.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208799|gb|EGD59595.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 467

 Score = 39.6 bits (91), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 15/120 (12%)

Query: 806 CQDARQFNIQIMPPSVNTP-----CVDFKVGDNRIYYSLAAI--------KGVGTTTARH 852
            Q+A+   I+I    VN         +F      +   L +I        + +    A  
Sbjct: 128 IQEAKGVGIEIDEEEVNQSFDRVAQQNFGQNTAALEKYLTSIGSSAASLKRQIKGEMAWQ 187

Query: 853 IMEASADKPFDSLEDFCSR--VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
            +     +P+ ++ D   R  +D  K  +   E  +    L     +R Q+L + D I +
Sbjct: 188 RLLRRNVQPYINVSDSEVREMMDRMKAAKGTEEYHIGEIFLSATDENRSQVLANADKIVE 247


>gi|117617708|ref|YP_857858.1| lysyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC
            7966]
 gi|166229790|sp|A0KNK7|SYK_AERHH RecName: Full=Lysyl-tRNA synthetase; AltName: Full=Lysine--tRNA
            ligase; Short=LysRS
 gi|117559115|gb|ABK36063.1| lysyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC
            7966]
          Length = 511

 Score = 39.6 bits (91), Expect = 3.3,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             + G K  +E  A   G  +++A  +++++           + T  + A + +   
Sbjct: 52   AEFGDKSADELAAL--GKRVKIAGRIMTRRIMGKAS-----FATLQDMAGKIQVYV 100


>gi|237753409|ref|ZP_04583889.1| competence protein 1 [Helicobacter winghamensis ATCC BAA-430]
 gi|229375676|gb|EEO25767.1| competence protein 1 [Helicobacter winghamensis ATCC BAA-430]
          Length = 90

 Score = 39.6 bits (91), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L ++KG+G   A+ I++  A +PF S+++    V+ K    + +E +
Sbjct: 28  LMSVKGIGEIKAQAILDYRAKQPFKSVDEL---VNVKGFGDKSVEKI 71


>gi|157866176|ref|XP_001681794.1| RNA helicase [Leishmania major strain Friedlin]
 gi|68125093|emb|CAJ02563.1| putative RNA helicase [Leishmania major strain Friedlin]
          Length = 1985

 Score = 39.6 bits (91), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 16/158 (10%)

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
              L  +     + +  VD   + I  D +    L+ + D   F E  +        +E++
Sbjct: 1641 TVLGKLCSYYYISHITVDLFNRNIEPDHSSGELLRLLCDAEEFNELPVRHNEDKLNMELA 1700

Query: 516  QKLEGLYRHA---STHAAGIVI-------GDRPLSQLVPMYRDVRSD-LPVTQFNMKWIE 564
            ++L    R A   S H    ++          P++  +   +    + + V Q  +    
Sbjct: 1701 RQLPLPVRDAEADSPHVKAFLLFQALFERAPMPITDYITDQKSAMDNAVRVIQAMVDVAA 1760

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
              G +   +  L+ +TL+Q  +   A+      L  IP
Sbjct: 1761 NNGHL---YAALRCMTLMQCMVQ--ARWWDDNSLLQIP 1793


>gi|300711869|ref|YP_003737683.1| PHP domain protein [Halalkalicoccus jeotgali B3]
 gi|299125552|gb|ADJ15891.1| PHP domain protein [Halalkalicoccus jeotgali B3]
          Length = 580

 Score = 39.2 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 2/44 (4%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL 56
            L  H+ +S  +G  S++  +          + I+D       +
Sbjct: 349 ELHTHTDWS--DGTESIDEWIASAETFGHEYLCISDHATGPGMV 390


>gi|282600248|ref|ZP_06257526.1| putative hydrolase YcdX [Providencia rustigianii DSM 4541]
 gi|282566017|gb|EFB71552.1| putative hydrolase YcdX [Providencia rustigianii DSM 4541]
          Length = 248

 Score = 39.2 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 1/39 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          V L  H+  S      +++    +  A      AITD  
Sbjct: 7  VDLHAHTIAS-THAFSTVDEYFAEATARGMKLFAITDHG 44


>gi|290955489|ref|YP_003486671.1| hypothetical protein SCAB_9211 [Streptomyces scabiei 87.22]
 gi|260645015|emb|CBG68101.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 349

 Score = 39.2 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VHS +S  +G   +  +    A        +TD 
Sbjct: 106 HVHSDWS--DGGSPIEEMGRTAARLGHEWAVLTDH 138


>gi|114767053|ref|ZP_01445950.1| hypothetical protein 1100011001291_R2601_07886 [Pelagibaca
          bermudensis HTCC2601]
 gi|114540772|gb|EAU43837.1| hypothetical protein R2601_07886 [Roseovarius sp. HTCC2601]
          Length = 306

 Score = 39.2 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS  S  +G L+   +  +  A+    +A+TD 
Sbjct: 17 LHTHSDRS--DGCLTPQEVCRRYRAEGYDFLALTDH 50


>gi|303250262|ref|ZP_07336462.1| tryptophan synthase subunit alpha [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252027|ref|ZP_07533927.1| Tryptophan synthase alpha chain [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307260955|ref|ZP_07542637.1| Tryptophan synthase alpha chain [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|302650878|gb|EFL81034.1| tryptophan synthase subunit alpha [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860496|gb|EFM92509.1| Tryptophan synthase alpha chain [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306869257|gb|EFN01052.1| Tryptophan synthase alpha chain [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 269

 Score = 39.2 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 42/125 (33%), Gaps = 10/125 (8%)

Query: 33  LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
            ++ A     A+ I D   L S  EF+Q A   GIQ +  C  + D     ++ N  +  
Sbjct: 115 FNRCAESGVDAVLIADVPVLASE-EFTQAAKKHGIQSVFICPPNADQVTIERIANLTEGY 173

Query: 93  -FPTVPSIVLLVSTAEGYQRLIELV-------SRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            +    S V         + L  L+       S   L   G          L  +G +G 
Sbjct: 174 TYLVSRSGVTSAENQAHAKNLDNLIESLKRSNSAPILQGFGIAKPAQVKEALA-LGCDGA 232

Query: 145 IMLTG 149
           I  + 
Sbjct: 233 ISGSA 237


>gi|238027995|ref|YP_002912226.1| PHP-like protein [Burkholderia glumae BGR1]
 gi|237877189|gb|ACR29522.1| PHP-like protein [Burkholderia glumae BGR1]
          Length = 276

 Score = 39.2 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 2/95 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L+   +  +  A      A+TD + +   L   + A A G++ + G 
Sbjct: 5   LHCHSNVS--DGHLAPAEVARRAQAAGVTLWALTDHDEVGGQLAAREAAEALGMRYLSGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           ++ +                     +  L  T  G
Sbjct: 63  EISVTWASRTVHVVGLHIDPANPALVDGLCRTRNG 97


>gi|217966636|ref|YP_002352142.1| phosphoesterase PHP domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217335735|gb|ACK41528.1| phosphoesterase PHP domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 480

 Score = 39.2 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
            +HS +S  +G LS+  ++          I +TD N +  
Sbjct: 193 HLHSYHS--DGELSIEELIKFSIKRGLDFIFLTDHNKISG 230


>gi|190149816|ref|YP_001968341.1| tryptophan synthase alpha chain [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303252140|ref|ZP_07338308.1| tryptophan synthase subunit alpha [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247476|ref|ZP_07529521.1| Tryptophan synthase alpha chain [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307263136|ref|ZP_07544757.1| Tryptophan synthase alpha chain [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|238692327|sp|B3GX47|TRPA_ACTP7 RecName: Full=Tryptophan synthase alpha chain
 gi|189914947|gb|ACE61199.1| tryptophan synthase alpha chain [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302648923|gb|EFL79111.1| tryptophan synthase subunit alpha [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855979|gb|EFM88137.1| Tryptophan synthase alpha chain [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306871498|gb|EFN03221.1| Tryptophan synthase alpha chain [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 269

 Score = 39.2 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 42/125 (33%), Gaps = 10/125 (8%)

Query: 33  LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
            ++ A     A+ I D   L S  EF+Q A   GIQ +  C  + D     ++ N  +  
Sbjct: 115 FNRCAESGVDAVLIADVPVLASE-EFTQAAKKHGIQSVFICPPNADQVTIERIANLTEGY 173

Query: 93  -FPTVPSIVLLVSTAEGYQRLIELV-------SRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            +    S V         + L  L+       S   L   G          L  +G +G 
Sbjct: 174 TYLVSRSGVTSAENQAHAKNLDNLIESLKRSNSAPILQGFGIAKPAQVKEALA-LGCDGA 232

Query: 145 IMLTG 149
           I  + 
Sbjct: 233 ISGSA 237


>gi|15790241|ref|NP_280065.1| hypothetical protein VNG1168C [Halobacterium sp. NRC-1]
 gi|169235970|ref|YP_001689170.1| hypothetical protein OE2676R [Halobacterium salinarum R1]
 gi|10580703|gb|AAG19545.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167727036|emb|CAP13822.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 197

 Score = 39.2 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           L  + G+G     +I+E      PF+S  D   RVD     + V+   + 
Sbjct: 132 LNLLPGIGEKLRDNILEERKRRGPFESFADVSERVDGLHTPQEVIVERIL 181


>gi|257051818|ref|YP_003129651.1| PHP domain protein [Halorhabdus utahensis DSM 12940]
 gi|256690581|gb|ACV10918.1| PHP domain protein [Halorhabdus utahensis DSM 12940]
          Length = 228

 Score = 39.2 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 67/244 (27%), Gaps = 56/244 (22%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HSS S  +G   +  +L + A     A+A+TD + + ++L   + A   G+  I 
Sbjct: 4   VELHAHSSLSY-DGRDGVEKLLARAADAGLDALAVTDHDEIAASLRAVELAPEYGLLGIP 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++       L +    K                                         
Sbjct: 63  GMEVTSAAGHVLALGVDEKITDGLPFGTT------------------------------- 91

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               L  I  +G +++                S+    R             + +   R 
Sbjct: 92  ----LDRIHDQGGVVVVPHPFQESRSGVMAKISRAELARADA----------IEVYNSRL 137

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSL---------FLSEEDYEAH-DVLMAVAHSTVVS 241
                  Q    A  H +P  A +++           L E D  +   +L A+       
Sbjct: 138 LTGRANRQARTFAREHGIPQTAGSDAHISEMVGRAVTLVETDERSVPAILEAIREGRTHI 197

Query: 242 QKDR 245
           +  R
Sbjct: 198 EGRR 201


>gi|206895105|ref|YP_002246645.1| ATP-dependent DNA helicase RecG [Coprothermobacter proteolyticus DSM
            5265]
 gi|206737722|gb|ACI16800.1| ATP-dependent DNA helicase RecG [Coprothermobacter proteolyticus DSM
            5265]
          Length = 793

 Score = 39.2 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                G +  +   VV  + +KT +G R+  VT  +     +  FF
Sbjct: 157  QLRTGIDATVLGTVVDVKLQKTYRGYRLLTVTLQDDTGRVDLVFF 201


>gi|305665895|ref|YP_003862182.1| hypothetical protein FB2170_06425 [Maribacter sp. HTCC2170]
 gi|88710670|gb|EAR02902.1| hypothetical protein FB2170_06425 [Maribacter sp. HTCC2170]
          Length = 415

 Score = 39.2 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
          L  HS +S  +G      I D   +     +A+TD N L 
Sbjct: 51 LHTHSYWS--DGDEFPEPIFDWYKSQNYHFLALTDHNTLA 88


>gi|188586730|ref|YP_001918275.1| copper amine oxidase domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351417|gb|ACB85687.1| copper amine oxidase domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 502

 Score = 39.2 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
           L  I  +    A  I+E   ++PF SL+D   RV 
Sbjct: 450 LTQIINIDVDRAEQIVELRKERPFTSLDDL-ERVK 483


>gi|167563324|ref|ZP_02356240.1| hypothetical protein BoklE_12273 [Burkholderia oklahomensis
          EO147]
          Length = 279

 Score = 39.2 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS  ++  +  A      A+TD + +       + A A G++ + G 
Sbjct: 8  LHCHSNVS--DGQLSPADVARRAHAGGVTLWALTDHDEVGGQRAAREAAEALGMRYLHGV 65

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 66 EISVTWASR 74


>gi|218779029|ref|YP_002430347.1| glycosyl transferase group 1 [Desulfatibacillum alkenivorans
          AK-01]
 gi|218760413|gb|ACL02879.1| glycosyl transferase group 1 [Desulfatibacillum alkenivorans
          AK-01]
          Length = 812

 Score = 39.2 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 12/55 (21%)

Query: 15 QVHSSYS------LLE--GALS----LNNILDKIAADQQPAIAITDTNNLFSALE 57
           VHS YS      +L   GA         +           + ITD N++  ALE
Sbjct: 11 HVHSKYSKRPSEWVLRKLGAAESYTEPTELYRIARDRGMNLVTITDHNSIGGALE 65


>gi|289704904|ref|ZP_06501321.1| UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate
           N-acetyltransferase [Micrococcus luteus SK58]
 gi|289558400|gb|EFD51674.1| UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate
           N-acetyltransferase [Micrococcus luteus SK58]
          Length = 497

 Score = 39.2 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 8/96 (8%)

Query: 27  LSLNNILDK-IAADQQPAIAITDTNNLFS---ALEFSQKACAAGIQPIIGCQLDI----D 78
             +   ++   A     A+AI D +++     A+E    A  A ++  +           
Sbjct: 63  ARVAEHIETVAAQLGIDALAIADQDDVPGTGRAVELGLAALPADLEGTVVVTYGDVPLLT 122

Query: 79  MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            +   ++    +     V  +   +  A GY R++ 
Sbjct: 123 PETLARLVADHEADGNAVTVLTATLEDATGYGRIVR 158


>gi|239917079|ref|YP_002956637.1| UDP-N-acetylglucosamine pyrophosphorylase /glucosamine-1-phosphate
           N-acetyltransferase [Micrococcus luteus NCTC 2665]
 gi|281414459|ref|ZP_06246201.1| UDP-N-acetylglucosamine pyrophosphorylase /glucosamine-1-phosphate
           N-acetyltransferase [Micrococcus luteus NCTC 2665]
 gi|259647740|sp|C5C9D1|GLMU_MICLC RecName: Full=Bifunctional protein glmU; Includes: RecName:
           Full=UDP-N-acetylglucosamine pyrophosphorylase; AltName:
           Full=N-acetylglucosamine-1-phosphate uridyltransferase;
           Includes: RecName: Full=Glucosamine-1-phosphate
           N-acetyltransferase
 gi|239838286|gb|ACS30083.1| UDP-N-acetylglucosamine pyrophosphorylase /glucosamine-1-phosphate
           N-acetyltransferase [Micrococcus luteus NCTC 2665]
          Length = 497

 Score = 39.2 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 8/96 (8%)

Query: 27  LSLNNILDK-IAADQQPAIAITDTNNLFS---ALEFSQKACAAGIQPIIGCQLDI----D 78
             +   ++   A     A+AI D +++     A+E    A  A ++  +           
Sbjct: 63  ARVAEHIETVAAQLGIDALAIADQDDVPGTGRAVELGLAALPADLEGTVVVTYGDVPLLT 122

Query: 79  MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            +   ++    +     V  +   +  A GY R++ 
Sbjct: 123 PETLARLVADHEADGNAVTVLTATLEDATGYGRIVR 158


>gi|156741821|ref|YP_001431950.1| phosphotransferase domain-containing protein [Roseiflexus
          castenholzii DSM 13941]
 gi|156233149|gb|ABU57932.1| PHP domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 382

 Score = 39.2 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           +H+ +S  +G+ S+ ++           I ITD ++L
Sbjct: 9  HMHTRFS--DGSGSVEDLACAARDAGLRWIIITDHDDL 44


>gi|148655572|ref|YP_001275777.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Roseiflexus sp. RS-1]
 gi|148567682|gb|ABQ89827.1| helix-hairpin-helix motif [Roseiflexus sp. RS-1]
          Length = 220

 Score = 39.2 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDF 868
           L A+ G+G+  A  I+E    + PF S++D 
Sbjct: 168 LDALPGIGSVLANRIVEWREREGPFRSVDDL 198


>gi|221632119|ref|YP_002521340.1| ATP-dependent DNA helicase RecG [Thermomicrobium roseum DSM 5159]
 gi|221156495|gb|ACM05622.1| ATP-dependent DNA helicase RecG [Thermomicrobium roseum DSM 5159]
          Length = 807

 Score = 39.2 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 58/206 (28%), Gaps = 26/206 (12%)

Query: 851  RHIMEASADKPFDS------LEDFCSR------VDSKKLNRRVLESLV-FAGALDCFGYS 897
            R I+E    K F        LE   +R       +      R+ E    F G  D    +
Sbjct: 14   RRILELEKRKGFQDTAAAGGLERLVARNLLGWLAEFPSQKARLQELAALFRGYADRSPAA 73

Query: 898  RMQL----LQSLDN-IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            R +L    L  LD      A+   +    +     A  +   + +       +     + 
Sbjct: 74   RAELVEKALAVLDGSASVPAEQTRRPARPRPAARTAPVRVDRAVEPDDPVTVLPGVGSQR 133

Query: 953  ENEQRVLGFY-FSGHPLDVY--KPILRKMGIKGYEESVATIR-GNNIR--LAAMVVSKQQ 1006
              +   LG        L     +  L    +         +R G  +   +   VV  + 
Sbjct: 134  ARQLEALGVTTVRD--LLFLVPRRYLDYTQVVPIGRLGRLVRPGEEVTCSVIGEVVQIET 191

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++T  G R   V   +        +F
Sbjct: 192  RETSGGRRYVSVQLRDETGTIPVIWF 217


>gi|206901292|ref|YP_002251736.1| putative secreted protein [Dictyoglomus thermophilum H-6-12]
 gi|206740395|gb|ACI19453.1| putative secreted protein [Dictyoglomus thermophilum H-6-12]
          Length = 480

 Score = 39.2 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
            +HS +S  +G LS+  ++          I +TD N +  
Sbjct: 193 HLHSYHS--DGELSIEELIKFSIKRGLDFIFLTDHNKISG 230


>gi|309775930|ref|ZP_07670922.1| putative PHP domain N- region family protein [Erysipelotrichaceae
          bacterium 3_1_53]
 gi|308916212|gb|EFP61960.1| putative PHP domain N- region family protein [Erysipelotrichaceae
          bacterium 3_1_53]
          Length = 273

 Score = 39.2 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
          L +HSS S  + +L + +I+          I+ITD +   
Sbjct: 6  LHIHSSCS--DSSLDVAHIIALAREQHMQTISITDHDTFA 43


>gi|315647285|ref|ZP_07900398.1| phosphoesterase PHP domain protein [Paenibacillus vortex V453]
 gi|315277487|gb|EFU40816.1| phosphoesterase PHP domain protein [Paenibacillus vortex V453]
          Length = 435

 Score = 39.2 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 3   QYLEKSPSFV--HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
           +++ K+P ++   L  HS +S  +GA +L      + +     IA+TD N 
Sbjct: 120 EFMHKTPRWLKGDLHTHSVHS--DGAYTLEENAAIMESLGCDFIAMTDHNT 168


>gi|294495699|ref|YP_003542192.1| hypothetical protein Mmah_1029 [Methanohalophilus mahii DSM 5219]
 gi|292666698|gb|ADE36547.1| Protein of unknown function DUF655 [Methanohalophilus mahii DSM
           5219]
          Length = 198

 Score = 39.2 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 20/48 (41%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           L  + G+G      I++      F SLE+   RV      ++ + + +
Sbjct: 127 LELLPGIGKKLMWAIIDERKKGEFKSLEELHERVGGVHTPQKAIVNRI 174


>gi|257051709|ref|YP_003129542.1| Protein of unknown function DUF655 [Halorhabdus utahensis DSM
           12940]
 gi|256690472|gb|ACV10809.1| Protein of unknown function DUF655 [Halorhabdus utahensis DSM
           12940]
          Length = 188

 Score = 39.2 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             +SL  + G+G      I++    KPF+S E+   RVD     + VL   + 
Sbjct: 118 RLHSLNLLPGIGKKLRNGILDERKRKPFESFEELTERVDGLHNPKEVLVDRIL 170


>gi|330507825|ref|YP_004384253.1| PHP domain [Methanosaeta concilii GP-6]
 gi|328928633|gb|AEB68435.1| PHP domain, putative [Methanosaeta concilii GP-6]
          Length = 203

 Score = 39.2 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 14/30 (46%)

Query: 28 SLNNILDKIAADQQPAIAITDTNNLFSALE 57
              +++     +   +A+TD N +  ALE
Sbjct: 2  KPERLVEHAKKKELDGLAVTDHNTIDGALE 31


>gi|325961947|ref|YP_004239853.1| PHP family phosphohydrolase, histidinol phosphatase [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323468034|gb|ADX71719.1| PHP family phosphohydrolase, histidinol phosphatase [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 347

 Score = 39.2 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G   +  +        +  +A+TD 
Sbjct: 103 LHSHSDWS--DGGSPIELMAAAAGVLGREYLALTDH 136


>gi|150376699|ref|YP_001313295.1| phosphotransferase domain-containing protein [Sinorhizobium
          medicae WSM419]
 gi|150031246|gb|ABR63362.1| PHP domain protein [Sinorhizobium medicae WSM419]
          Length = 246

 Score = 39.2 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          V LQVH+  S  +G  +   IL         A+A T+ 
Sbjct: 27 VELQVHT--SWTDGQATALEILQTAKERGLAALAFTEH 62


>gi|217077076|ref|YP_002334792.1| histidinol phosphatase [Thermosipho africanus TCF52B]
 gi|217036929|gb|ACJ75451.1| histidinol phosphatase [Thermosipho africanus TCF52B]
          Length = 238

 Score = 39.2 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE 57
           +HS++S  +   S+ +I+          I ITD    + A+E
Sbjct: 5  HIHSNFSP-DSNSSVEDIVKYAREKNLK-IIITDH---YEAVE 42


>gi|312135462|ref|YP_004002800.1| histidinol phosphate phosphatase hisj family
          [Caldicellulosiruptor owensensis OL]
 gi|311775513|gb|ADQ05000.1| histidinol phosphate phosphatase HisJ family
          [Caldicellulosiruptor owensensis OL]
          Length = 266

 Score = 39.2 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           +HS++S  +  +S+   + K        IA TD  +L
Sbjct: 5  HIHSNFSS-DSNMSMEEAVKKAIDLSLDEIAFTDHMDL 41


>gi|217967304|ref|YP_002352810.1| PHP domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217336403|gb|ACK42196.1| PHP domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 249

 Score = 39.2 bits (90), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 12 VHLQVHSSYSLL-EGALSLNNILDKIAADQQPAIAITDTN 50
          V L +H+  S   +  +S   I++K        I ITD +
Sbjct: 6  VDLHIHTILSPCGDWNMSPKKIVEKAKEIGLGIIGITDHH 45


>gi|225571518|ref|ZP_03780514.1| hypothetical protein CLOHYLEM_07616 [Clostridium hylemonae DSM
           15053]
 gi|225159595|gb|EEG72214.1| hypothetical protein CLOHYLEM_07616 [Clostridium hylemonae DSM
           15053]
          Length = 243

 Score = 39.2 bits (90), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 11  FVHLQVH--SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           F+   +H  + YS  +  L+L  ++++        I ITD +++    +++++  A    
Sbjct: 27  FIDTHMHEMT-YS-KDSILTLREMVERGREKGLGGICITDHDSM-GIRDYAREYAAKTAF 83

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           PI        ++ ++      + P   VP
Sbjct: 84  PIFTGIEYYSLEGDIVAFGIREYPKERVP 112


>gi|70726819|ref|YP_253733.1| hypothetical protein SH1818 [Staphylococcus haemolyticus JCSC1435]
 gi|68447543|dbj|BAE05127.1| DNA-dependent DNA polymerase beta chain [Staphylococcus
           haemolyticus JCSC1435]
          Length = 569

 Score = 39.2 bits (90), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++         + ITD 
Sbjct: 336 HMHTTYS--DGAFSIRDMIEANINKGYQFMVITDH 368


>gi|83956085|ref|ZP_00964567.1| hypothetical protein NAS141_02791 [Sulfitobacter sp. NAS-14.1]
 gi|83839651|gb|EAP78830.1| hypothetical protein NAS141_02791 [Sulfitobacter sp. NAS-14.1]
          Length = 741

 Score = 39.2 bits (90), Expect = 3.9,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 60/160 (37%), Gaps = 22/160 (13%)

Query: 810 RQFNIQIMPPSVNTPCVDFKV------GDNRIYYSLAAIKGVGTTTA--RHIM--EASAD 859
           R+      PP +N     F +       D R Y  ++A+ G+G      R I+   ASA 
Sbjct: 349 RRKTAIFPPPGINRRDSHFALTRALKDADGRRYVGISAL-GIGPRKVMLRSIVPMLASAQ 407

Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
           + F    D  +R  SK      + +L +  AL   G SR  +   +    +   W  +  
Sbjct: 408 QQF----DHDNRDGSKNPADPYMTALCYFNALRELGASRRIIEDEVATNLR--VWPRRRL 461

Query: 920 TNKHE---NIFAHEKGTFSDKIT--LEKFSVENSSVRFEN 954
            +  +   + FA    T  D++T  L    V  +  R E 
Sbjct: 462 RDGQDEVSSSFAARNITAPDELTSRLSTDDVAIAKERLEQ 501


>gi|300709615|ref|YP_003735429.1| PHP domain protein [Halalkalicoccus jeotgali B3]
 gi|299123298|gb|ADJ13637.1| PHP domain protein [Halalkalicoccus jeotgali B3]
          Length = 259

 Score = 39.2 bits (90), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          +  L VH++ S  +GA++L ++           +AITD +
Sbjct: 3  YADLHVHTTAS--DGAMALASVPAAARKAGVAVVAITDHD 40


>gi|240102058|ref|YP_002958366.1| hypothetical protein TGAM_2157 [Thermococcus gammatolerans EJ3]
 gi|239909611|gb|ACS32502.1| Conserved hypothetical protein containing PHP domain N-terminal
          region [Thermococcus gammatolerans EJ3]
          Length = 208

 Score = 39.2 bits (90), Expect = 4.0,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           VH++Y+  +G  S+  I ++      P +A T+ 
Sbjct: 17 HVHTNYT--DGRNSVFEICERARELGIPLLAFTEH 49


>gi|34499286|ref|NP_903501.1| DNA transport competence protein [Chromobacterium violaceum ATCC
           12472]
 gi|34105137|gb|AAQ61493.1| probable DNA transport competence protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 105

 Score = 39.2 bits (90), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           L A+KG+G   A+ I++    + PF +++D         +  + LESL  
Sbjct: 32  LEALKGIGPAKAKAIVDYRTKNGPFKTVDDLKK---VSGIGDKTLESLRK 78


>gi|307717410|gb|ADN88758.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
 gi|307717414|gb|ADN88760.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
 gi|307717416|gb|ADN88761.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
          Length = 231

 Score = 39.2 bits (90), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 2/74 (2%)

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           I+                   +G       P    +   TA G + L +L++   + +  
Sbjct: 157 IKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYF 215

Query: 126 KQSVRICLSWLQEI 139
            +  RI  S L+++
Sbjct: 216 YRVPRIPRSQLKKL 229


>gi|307717332|gb|ADN88719.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score = 39.2 bits (90), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 2/74 (2%)

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           I+                   +G       P    +   TA G + L +L++   + +  
Sbjct: 157 IKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYF 215

Query: 126 KQSVRICLSWLQEI 139
            +  RI  S L+++
Sbjct: 216 YRVPRIPRSQLKKL 229


>gi|307594937|ref|YP_003901254.1| PHP domain-containing protein [Vulcanisaeta distributa DSM 14429]
 gi|307550138|gb|ADN50203.1| PHP domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 228

 Score = 39.2 bits (90), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          L  H+ YS  +G  +   ++          ++ITD +    +L+ 
Sbjct: 5  LHTHTIYS--DGKGTPEEVIINALNKGIGILSITDHDTFKGSLKA 47


>gi|91214598|ref|ZP_01251571.1| ATP-dependent DNA helicase RecG [Psychroflexus torquis ATCC 700755]
 gi|91187025|gb|EAS73395.1| ATP-dependent DNA helicase RecG [Psychroflexus torquis ATCC 700755]
          Length = 700

 Score = 39.2 bits (90), Expect = 4.2,   Method: Composition-based stats.
 Identities = 7/58 (12%), Positives = 18/58 (31%), Gaps = 3/58 (5%)

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + K       E         +++   +   +    ++G R+    F +     E  +F
Sbjct: 45   IDKSRFYKISELQD--NSAEVQIIGKITGVRTLPMKQGKRVV-ANFQDDTGSIELVWF 99


>gi|307717322|gb|ADN88714.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717324|gb|ADN88715.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717408|gb|ADN88757.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717412|gb|ADN88759.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717418|gb|ADN88762.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
          Length = 231

 Score = 39.2 bits (90), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 2/74 (2%)

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           I+                   +G       P    +   TA G + L +L++   + +  
Sbjct: 157 IKDAKEMHDIEYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYF 215

Query: 126 KQSVRICLSWLQEI 139
            +  RI  S L+++
Sbjct: 216 YRVPRIPRSQLKKL 229


>gi|269796060|ref|YP_003315515.1| putative metal-dependent phosphoesterase, PHP family
          [Sanguibacter keddieii DSM 10542]
 gi|269098245|gb|ACZ22681.1| predicted metal-dependent phosphoesterase, PHP family
          [Sanguibacter keddieii DSM 10542]
          Length = 284

 Score = 39.2 bits (90), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L  HS+ S  +G  S   ++   AA     +A+TD +      E ++ A  +G+  + 
Sbjct: 9  LHTHSNAS--DGTESPAGVVGSAAAAGLDVVALTDHDTTAGWDEAAEAALRSGVALVR 64


>gi|253743510|gb|EES99882.1| Metal-dependent phosphoesterase, putative [Giardia intestinalis
          ATCC 50581]
          Length = 320

 Score = 39.2 bits (90), Expect = 4.3,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          V L +H+ +S  +G      +L+   ++     A+TD + L
Sbjct: 3  VDLHMHTRFS--DGEHPPETVLEMAYSNGVTLCALTDHDTL 41


>gi|257388712|ref|YP_003178485.1| hypothetical protein Hmuk_2672 [Halomicrobium mukohataei DSM 12286]
 gi|257171019|gb|ACV48778.1| Protein of unknown function DUF655 [Halomicrobium mukohataei DSM
           12286]
          Length = 190

 Score = 38.8 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL-ESLVFAGALDCFGYS 897
           L  + G+G      I++    KPF+S E+   RV      + VL E ++   + D   YS
Sbjct: 122 LNLLPGIGKKLRNSILDERKRKPFESFEELEERVSGLHNPKEVLVERILEELSEDDLKYS 181

Query: 898 R 898
           R
Sbjct: 182 R 182


>gi|315644672|ref|ZP_07897803.1| PHP domain protein [Paenibacillus vortex V453]
 gi|315279931|gb|EFU43230.1| PHP domain protein [Paenibacillus vortex V453]
          Length = 258

 Score = 38.8 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 77/242 (31%), Gaps = 42/242 (17%)

Query: 14  LQVH------SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           L  H      S +S          ++ +   +   A+A+T+  N  +  E  Q+     +
Sbjct: 5   LHTHAKLSKASDFS----QTYYEEMVREAMDNGLHALALTEHFNTRNFDEVYQQ-----L 55

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             +     +      LK+    +        I+L+            L +R  L D  ++
Sbjct: 56  DRMFPYNGEYYDAGGLKIFPGMEVDIRETGHILLIGRKE------FILETRRQLNDYTEK 109

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              I    L ++  E L +L  G+    +     +      +RL  F     D       
Sbjct: 110 GAFIPFDDLMDLA-EALPLLKIGAHPFRESTPLHHLDHSQLQRLDAFDLNAKD------- 161

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            ++      + QV + A     P+ A +++                + + +V ++ D P 
Sbjct: 162 MYQYGCEANQDQVQRFAAKLGKPVTAGSDTHQ-------------CLQYGSVYNELDMPC 208

Query: 248 VT 249
            T
Sbjct: 209 ET 210


>gi|308186525|ref|YP_003930656.1| hydrolase [Pantoea vagans C9-1]
 gi|308057035|gb|ADO09207.1| Putative hydrolase [Pantoea vagans C9-1]
          Length = 245

 Score = 38.8 bits (89), Expect = 4.5,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 12/54 (22%)

Query: 12 VHLQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN-NLFSALEFS 59
          V L +H+     +YS L       + + +         AITD   ++  A  + 
Sbjct: 4  VDLHMHTIASTHAYSTLH------DYVTQAKQTGMKLFAITDHGPDMADAPHYW 51


>gi|225388376|ref|ZP_03758100.1| hypothetical protein CLOSTASPAR_02112 [Clostridium asparagiforme
          DSM 15981]
 gi|225045564|gb|EEG55810.1| hypothetical protein CLOSTASPAR_02112 [Clostridium asparagiforme
          DSM 15981]
          Length = 268

 Score = 38.8 bits (89), Expect = 4.5,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           +H+ +S  +    +   +D+  A     I ITD +
Sbjct: 6  HMHTEFS-GDSETPVRTQIDRAIALGMEEICITDHH 40


>gi|289548703|ref|YP_003473691.1| hypothetical protein Thal_0932 [Thermocrinis albus DSM 14484]
 gi|289182320|gb|ADC89564.1| hypothetical protein Thal_0932 [Thermocrinis albus DSM 14484]
          Length = 333

 Score = 38.8 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 12/87 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN-----------LFSALEFSQKA 62
           L +H+ +S  +      +I   +  +    + ITD  N           L      +++ 
Sbjct: 49  LHLHTQFSY-DSLGKPEDIRRAMEEEDVNFVFITDHENDYIKYFCDERMLAGIERKTEEG 107

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQG 89
               I P+         +   K   +G
Sbjct: 108 AVLCIGPVKVIAHPFKEKYRWKGNREG 134


>gi|291287254|ref|YP_003504070.1| PHP domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884414|gb|ADD68114.1| PHP domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 301

 Score = 38.8 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L +HS +S  +G LS + IL    +      +ITD N++ SA
Sbjct: 10 LHMHSDHSS-DGVLSPDEILTVTRSRGINMFSITDHNSVASA 50


>gi|171186021|ref|YP_001794940.1| putative nucleotide binding protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170935233|gb|ACB40494.1| putative nucleotide binding protein [Thermoproteus neutrophilus
           V24Sta]
          Length = 193

 Score = 38.8 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 15/90 (16%)

Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY---------------SLAAIKG 844
           EK+ K  +  R  ++Q          V   V      +               SL  ++G
Sbjct: 74  EKVDKIVRRIRYEDLQPQGRDNLKIVVRKIVEQQESRFVKWINETGPVTLKLHSLELLRG 133

Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDS 874
           VG      ++E    KPF S E+   RV  
Sbjct: 134 VGKKKVHEVLEERKKKPFSSYEEVKQRVGL 163


>gi|163782603|ref|ZP_02177600.1| DNA polymerase beta family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882176|gb|EDP75683.1| DNA polymerase beta family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 581

 Score = 38.8 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 9/50 (18%)

Query: 7   KSPSFVHL-------QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           K P  V L        +H+++S  +G  SL  ++D         I I D 
Sbjct: 331 KLPKLVELKDIKGDFHMHTNWS--DGINSLEEVVDACYKLGYEYIVIGDH 378


>gi|89100805|ref|ZP_01173657.1| ComEA [Bacillus sp. NRRL B-14911]
 gi|89084451|gb|EAR63600.1| ComEA [Bacillus sp. NRRL B-14911]
          Length = 136

 Score = 38.8 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           L  I G+G + A  I+E    + PF SLED        +     L+S + 
Sbjct: 85  LQDIPGIGPSKAAAIIEYRETEGPFQSLEDLMQISGIGEKTFEKLKSYIK 134


>gi|159901054|ref|YP_001547301.1| phosphotransferase domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894093|gb|ABX07173.1| PHP domain protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 279

 Score = 38.8 bits (89), Expect = 4.8,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 42/133 (31%), Gaps = 18/133 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+  +      +   ++    A     I I D N       F++ A AAG+  I G 
Sbjct: 5   LHCHTIATPHHSHWTPTELMAAAQAAGIQVIGIADHNTTSQVTAFAEAAQAAGLDFIGGV 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS-TAEGYQRLIELVSRMYLLDQGK-----Q 127
           + D      L              ++V   +    G   L E V R    D  +     +
Sbjct: 65  EFDSAFNGKLW------------HTLVYGANPNDPGILGLCEAVVRRNHADAQRLLEQTR 112

Query: 128 SVRICLSWLQEIG 140
           S    L  L +I 
Sbjct: 113 SAGHDLPSLAQIA 125


>gi|308162572|gb|EFO64959.1| Metal-dependent phosphoesterase, putative [Giardia lamblia P15]
          Length = 320

 Score = 38.8 bits (89), Expect = 4.8,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          L  H+ +S  +G      +L+   ++     A+TD + L +    
Sbjct: 5  LHTHTQFS--DGEHPPETVLEMACSNNTALCALTDHDTLQAYFHL 47


>gi|169832211|ref|YP_001718193.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Candidatus Desulforudis audaxviator MP104C]
 gi|169639055|gb|ACA60561.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 190

 Score = 38.8 bits (89), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 810 RQFNIQIMPPSVNTPC--VDFKVGDN-RIYYSLAAIKGVGTTTARHIME-ASADKPFDSL 865
           R  + + + P  N P   VD ++  N      L  + G+G + A  I+     + PF S+
Sbjct: 107 RPPDPEGVGPGSNAPAAPVDSRININTADRAELERLPGIGPSLAERIIRYREQNGPFSSV 166

Query: 866 EDF 868
           +D 
Sbjct: 167 DDL 169


>gi|145295505|ref|YP_001138326.1| excinuclease ABC subunit B [Corynebacterium glutamicum R]
 gi|140845425|dbj|BAF54424.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 720

 Score = 38.8 bits (89), Expect = 4.9,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 83/259 (32%), Gaps = 36/259 (13%)

Query: 258 SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
            E+ +++  +     +T+            H    P  +EK   DI+ E E  L +    
Sbjct: 262 DEIDALY-YIHPLTGDTIRQVNEIRIFPATHYVAGPERMEKAVTDIKAELEVRLADLENR 320

Query: 318 GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
           G           K   AQ  R R +++L +I ++ F            +++  +   G G
Sbjct: 321 G-----------KLLEAQRLRMRTEYDLEMIEQVGFCSGIE------NYSRHID---GRG 360

Query: 378 RGSGAGSVTAY----ALTI---TDIDPLRFSLLFERFLNPDRM-SMPDFDIDFCQDRRDE 429
            G+   ++  Y     LTI   + +   +   +FE  ++  R      F +    D R  
Sbjct: 361 EGTAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEFGFRLPSAMDNRPL 420

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
                  + G   V    T G  +  AA  +    +  P   VD      P     P   
Sbjct: 421 TWEEFDERRGQT-VFMSATPGKFEIAAADGEFVEQVIRPTGLVD------PKVTVKPTKG 473

Query: 490 QAIADDSRFREARLADPSV 508
           Q        R+    D  V
Sbjct: 474 QIDDLIHEIRQRTDKDERV 492


>gi|317121943|ref|YP_004101946.1| stage IV sporulation protein A [Thermaerobacter marianensis DSM
           12885]
 gi|315591923|gb|ADU51219.1| stage IV sporulation protein A [Thermaerobacter marianensis DSM
           12885]
          Length = 492

 Score = 38.8 bits (89), Expect = 4.9,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 81/250 (32%), Gaps = 27/250 (10%)

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               + E  T G+++ T GS G I R  F  + Q   + L    K F   + +N      
Sbjct: 137 TRKIITEHSTLGVVVTTDGSFGEIPRENFVEAEQQVIRELKELGKPFV--VLLNTADPLS 194

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            +  + ++ +   Y  ++  +A N             D+L+ +    +        V   
Sbjct: 195 PETAQLAETLAFDYDVQVIPIALNRVGE--------RDLLVVLEQLLLEFPVRELVVRLP 246

Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSF----ILQVHAPILPRFIEKECDDIQKEE 307
            +++   E   +     +A+  TV+   R       I Q+        ++ E  D+    
Sbjct: 247 AWVEELDEDFWLRRHYADAIGATVQNVERLRDVERAIAQLGEYQHVEKVDLEQLDLGTGV 306

Query: 308 EN----------ELRNKAVAGLEVRLAQGAIA---KGYHAQDYRQRLDFELNVIARMKFS 354
                        L    ++G+E+R  +  +        A+    R+   L       ++
Sbjct: 307 ATVDVSVPEDLFWLVLGEISGMEIRGKENLVRLVRDLSRAKAVYDRIGRSLEAADEHGYA 366

Query: 355 GYFLIVADFI 364
                + D +
Sbjct: 367 VVMPALDDLV 376


>gi|219851213|ref|YP_002465645.1| Protein of unknown function DUF655 [Methanosphaerula palustris
           E1-9c]
 gi|219545472|gb|ACL15922.1| Protein of unknown function DUF655 [Methanosphaerula palustris
           E1-9c]
          Length = 186

 Score = 38.8 bits (89), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           L  + G+G      I++A   KPF+S  D   R+        ++++ + 
Sbjct: 122 LHLLPGIGKKLMWEILDARGKKPFESFADISQRIKGIPHPEIMIKNRIL 170


>gi|302038376|ref|YP_003798698.1| excinuclease ABC subunit B [Candidatus Nitrospira defluvii]
 gi|300606440|emb|CBK42773.1| Excinuclease ABC, subunit B [Candidatus Nitrospira defluvii]
          Length = 665

 Score = 38.8 bits (89), Expect = 4.9,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 31/239 (12%)

Query: 151 SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV---------NLQRHRGYDRYRESQVV 201
            +G + + F       A +  +++   +    Y+         +   +   D+ R +   
Sbjct: 68  LAGQLYQEFKQFFPHNAVEYFISYYDYYQPEAYIPQSDTYIAKDASINDAIDQMRHAATT 127

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV------------VSQKDRPRVT 249
            L   +++ +V++ + ++        HD+L+ +                 +         
Sbjct: 128 SLLQRNDVLIVSSVSCIYGLGSPEVYHDMLVYLEEGMETRREKILAKLVEIQYARNDVDF 187

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                + R +++ IF    EA    +E+       +    P+  + + K          +
Sbjct: 188 HRGTFRARGDVIEIFPASSEAKSVRIELFGDVVDAIHEIDPLTGKSLGKLPKIAIYPNTH 247

Query: 310 EL-----RNKAVAGLEVRLAQGAIAKGY-----HAQDYRQRLDFELNVIARMKFSGYFL 358
            L       +A+ G+E  L     A         AQ   QR  F+L +I  M +     
Sbjct: 248 YLIAPDRYERAITGIEEELDARVAAFKKNGQLLEAQRIEQRTKFDLEMIRAMGYCHGIE 306


>gi|213401819|ref|XP_002171682.1| DNA replication licensing factor mcm10 [Schizosaccharomyces japonicus
            yFS275]
 gi|211999729|gb|EEB05389.1| DNA replication licensing factor mcm10 [Schizosaccharomyces japonicus
            yFS275]
          Length = 662

 Score = 38.8 bits (89), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 9/73 (12%)

Query: 969  DVYKPILRKMGIKGYEESVAT--------IRGNNIRLAAMVVSKQ-QKKTRKGSRIGWVT 1019
            +  +  L  M +      +             +N  LA +V  K     T +GS+   +T
Sbjct: 225  EQLRECLSGMRVLLVPHMLKLVIPPKFEPPDEDNYVLAGIVAQKSPVLTTARGSKYCIIT 284

Query: 1020 FSEPAKEYEANFF 1032
             ++   E +   F
Sbjct: 285  LTDLKSELDCFLF 297


>gi|307717320|gb|ADN88713.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717330|gb|ADN88718.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717378|gb|ADN88742.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717380|gb|ADN88743.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717394|gb|ADN88750.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717396|gb|ADN88751.1| DNA polymerase III [Listeria monocytogenes]
          Length = 231

 Score = 38.8 bits (89), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 2/74 (2%)

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           I+                   +G       P    +   TA G + L +L++   + +  
Sbjct: 157 IKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYF 215

Query: 126 KQSVRICLSWLQEI 139
            +  RI  S L+++
Sbjct: 216 YRVPRIPRSQLKKL 229


>gi|297204244|ref|ZP_06921641.1| PHP domain-containing protein [Streptomyces sviceus ATCC 29083]
 gi|297148618|gb|EFH29049.1| PHP domain-containing protein [Streptomyces sviceus ATCC 29083]
          Length = 349

 Score = 38.8 bits (89), Expect = 5.1,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +HS +S  +G   +  +    A        +TD 
Sbjct: 108 HLHSDWS--DGGSPIEEMGRTAAELGHEWAVLTDH 140


>gi|157364326|ref|YP_001471093.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Thermotoga lettingae TMO]
 gi|157314930|gb|ABV34029.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotoga lettingae TMO]
          Length = 180

 Score = 38.8 bits (89), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 14/70 (20%)

Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKK 876
           P  +N+            Y  L  I G+G   AR I++    + PF S+ED     +   
Sbjct: 49  PIDINS----------ATYEELLEIPGIGPAKARSILDYRESNGPFQSIEDL---TNVSG 95

Query: 877 LNRRVLESLV 886
           + R   E + 
Sbjct: 96  IGRATAEKMA 105


>gi|78221406|ref|YP_383153.1| RNA binding S1 [Geobacter metallireducens GS-15]
 gi|78192661|gb|ABB30428.1| RNA binding S1 [Geobacter metallireducens GS-15]
          Length = 757

 Score = 38.8 bits (89), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLAAIKGVGTTTARHIMEAS-A 858
           + ++  D  Q  ++     V   CV+F     +   +  L+ + GVG + A+ I+    A
Sbjct: 465 VGQYQHDVDQKALKKALDDVVESCVNFVGVDLNTASWALLSYVSGVGQSLAKAIVTRRDA 524

Query: 859 DKPFDS 864
           + PF S
Sbjct: 525 EGPFAS 530


>gi|320095621|ref|ZP_08027282.1| hypothetical protein HMPREF9005_1894 [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977442|gb|EFW09124.1| hypothetical protein HMPREF9005_1894 [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 434

 Score = 38.8 bits (89), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +H+ YS      +  +            +   D +++ +A E +    A G+    G  
Sbjct: 37  HIHTCYSF--SPYTPTHAALLARRAGLRVVGSVDHDSIAAAPEMTAATRALGM----GSV 90

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLV-STAEGYQRLIELVSRMYLLDQGKQSVRICL 133
              +++                P    +   T +G           +L  + +  +R  L
Sbjct: 91  TGFEIRARFDPDGPLDGRKLNNPDSAGIAYMTVQGVPAPARAAVDAWLAPKRQARLRRTL 150

Query: 134 SWLQEI 139
           +   E 
Sbjct: 151 AMADEA 156


>gi|225023842|ref|ZP_03713034.1| hypothetical protein EIKCOROL_00708 [Eikenella corrodens ATCC
          23834]
 gi|224943316|gb|EEG24525.1| hypothetical protein EIKCOROL_00708 [Eikenella corrodens ATCC
          23834]
          Length = 258

 Score = 38.8 bits (89), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 32 ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
          ++    A+    +A+TD ++     E  Q+A A GI+ I G ++ +  +  
Sbjct: 1  MVKLAHANGCTLLALTDHDHTGGLAEARQEAEALGIRLINGVEISVSWRKR 51


>gi|325261969|ref|ZP_08128707.1| putative PHP domain protein [Clostridium sp. D5]
 gi|324033423|gb|EGB94700.1| putative PHP domain protein [Clostridium sp. D5]
          Length = 271

 Score = 38.8 bits (89), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H++ S  + +L    IL    A     ++ TD +    A +    A   GIQ I G 
Sbjct: 7  LHIHTAVS--DCSLQTEAILAGAKAAGITHLSFTDHDTTADAQKHKAMAREQGIQAIKGI 64

Query: 74 QLDIDMQDNLKMTN 87
          ++        K  +
Sbjct: 65 EMSAYDFKRNKKVH 78


>gi|292656865|ref|YP_003536762.1| putative RNA-binding protein [Haloferax volcanii DS2]
 gi|291370661|gb|ADE02888.1| Predicted RNA-binding protein [Haloferax volcanii DS2]
          Length = 197

 Score = 38.8 bits (89), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           L  + G+G      I+E+     PF+S ED  +RV      + V+   + 
Sbjct: 129 LNLLPGIGKKLRDKILESRKRQGPFESFEDLEARVSGLHRPKEVIVERIL 178


>gi|302539938|ref|ZP_07292280.1| cell division topological specificity factor MinE [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302457556|gb|EFL20649.1| cell division topological specificity factor MinE [Streptomyces
           himastatinicus ATCC 53653]
          Length = 581

 Score = 38.8 bits (89), Expect = 5.2,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H+   L +G   L N++           A+TD 
Sbjct: 342 LHTHTD--LTDGLEPLENMIATAERRGYAYYAVTDH 375


>gi|153004145|ref|YP_001378470.1| phosphotransferase domain-containing protein [Anaeromyxobacter
          sp. Fw109-5]
 gi|152027718|gb|ABS25486.1| PHP domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 279

 Score = 38.8 bits (89), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  S  +G  +   + ++ AA       + D + +       Q A   G++ + G 
Sbjct: 12 LHSHSLAS--DGEYAAGEVAERAAAAGLRVWGLCDHDTVAGLTAAQQAADRVGLRFVPG- 68

Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSI 99
                 D  ++   G    P  P +
Sbjct: 69 IELSAFLDRREIHLLGHFVDPEHPGL 94


>gi|167578728|ref|ZP_02371602.1| PHP domain N-terminal region family protein [Burkholderia
           thailandensis TXDOH]
          Length = 614

 Score = 38.8 bits (89), Expect = 5.4,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H++ +  +G  SL ++  +        +AITD 
Sbjct: 343 LHAHTNAT--DGRDSLQDMALEARKRGLDYLAITDH 376


>gi|161524349|ref|YP_001579361.1| phosphotransferase domain-containing protein [Burkholderia
          multivorans ATCC 17616]
 gi|189350897|ref|YP_001946525.1| putative phosphoesterase [Burkholderia multivorans ATCC 17616]
 gi|160341778|gb|ABX14864.1| PHP domain protein [Burkholderia multivorans ATCC 17616]
 gi|189334919|dbj|BAG43989.1| putative phosphoesterase [Burkholderia multivorans ATCC 17616]
          Length = 279

 Score = 38.8 bits (89), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L  HS+ S  +G LS  ++  +         A+TD + +  
Sbjct: 8  LHCHSNVS--DGLLSPADVARRAYDGGVTLWALTDHDEVGG 46


>gi|220914686|ref|YP_002489994.1| Integrase catalytic region [Methylobacterium nodulans ORS 2060]
 gi|219952437|gb|ACL62827.1| Integrase catalytic region [Methylobacterium nodulans ORS 2060]
          Length = 323

 Score = 38.8 bits (89), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 22/108 (20%)

Query: 4   YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIA---------ITDTNNLFS 54
            ++++  FVHL           A+  + +     A  + A+A         +TD  + F+
Sbjct: 160 AIDRASRFVHL-----------AVKDDEMAASAIAFLEEALAALPFRVTQVLTDRGSCFT 208

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           A EF       G++           + N  +          V SI L 
Sbjct: 209 ADEFETACRRHGVE--HRTTRPYTPRTNSMVERFNDRVQREVLSITLY 254


>gi|319795293|ref|YP_004156933.1| php domain protein [Variovorax paradoxus EPS]
 gi|315597756|gb|ADU38822.1| PHP domain protein [Variovorax paradoxus EPS]
          Length = 285

 Score = 38.8 bits (89), Expect = 5.5,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 67/176 (38%), Gaps = 11/176 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +G L+   +  + AA+     A+TD + +      +  A   G++ + G 
Sbjct: 9   LHCHSVVS--DGTLTPEALAARAAANGVELWALTDHDEVGGQHRAAAAARENGMRYLTGT 66

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++ +   +       G    P   ++   +    G +       R   + +G   V I  
Sbjct: 67  EISVTFANETVHIV-GLGFDPDDAAMTQGLYDTRGGRG-----KRAQEMSEGLAKVGIHG 120

Query: 134 SW---LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
           ++   L+ +G   LI  T  +   +++    ++ +V  K L   K  +    + +L
Sbjct: 121 AYEGALRFVGNPELISRTHFARFLVEQGHCRDTPEVFRKFLTEGKPGYVPHRWASL 176


>gi|221214751|ref|ZP_03587720.1| PHP C- domain protein [Burkholderia multivorans CGD1]
 gi|221165290|gb|EED97767.1| PHP C- domain protein [Burkholderia multivorans CGD1]
          Length = 279

 Score = 38.8 bits (89), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L  HS+ S  +G LS  ++  +         A+TD + +  
Sbjct: 8  LHCHSNVS--DGLLSPADVARRAYDGGVTLWALTDHDEVGG 46


>gi|254168503|ref|ZP_04875347.1| hypothetical protein ABOONEI_2671 [Aciduliprofundum boonei T469]
 gi|197622558|gb|EDY35129.1| hypothetical protein ABOONEI_2671 [Aciduliprofundum boonei T469]
          Length = 240

 Score = 38.8 bits (89), Expect = 5.5,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          S ++  +HS++S  +G  +   I+ +    +   IAITD 
Sbjct: 7  SMINFHIHSTWS--DGLYTPEIIVREAIKKKMEKIAITDH 44


>gi|221198405|ref|ZP_03571451.1| PHP C- domain protein [Burkholderia multivorans CGD2M]
 gi|221208918|ref|ZP_03581915.1| PHP C- domain protein [Burkholderia multivorans CGD2]
 gi|221171201|gb|EEE03651.1| PHP C- domain protein [Burkholderia multivorans CGD2]
 gi|221182337|gb|EEE14738.1| PHP C- domain protein [Burkholderia multivorans CGD2M]
          Length = 279

 Score = 38.8 bits (89), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L  HS+ S  +G LS  ++  +         A+TD + +  
Sbjct: 8  LHCHSNVS--DGLLSPADVARRAYDGGVTLWALTDHDEVGG 46


>gi|254166791|ref|ZP_04873645.1| hypothetical protein ABOONEI_1883 [Aciduliprofundum boonei T469]
 gi|289596138|ref|YP_003482834.1| PHP domain protein [Aciduliprofundum boonei T469]
 gi|197624401|gb|EDY36962.1| hypothetical protein ABOONEI_1883 [Aciduliprofundum boonei T469]
 gi|289533925|gb|ADD08272.1| PHP domain protein [Aciduliprofundum boonei T469]
          Length = 240

 Score = 38.8 bits (89), Expect = 5.5,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          S ++  +HS++S  +G  +   I+ +    +   IAITD 
Sbjct: 7  SMINFHIHSTWS--DGLYTPEIIVREAIKKKMEKIAITDH 44


>gi|39996408|ref|NP_952359.1| phosphotransferase domain-containing protein [Geobacter
          sulfurreducens PCA]
 gi|39983288|gb|AAR34682.1| PHP domain protein [Geobacter sulfurreducens PCA]
          Length = 514

 Score = 38.8 bits (89), Expect = 5.6,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 12 VHLQVHS-SYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          + +  H+  YS   G  ++ N++ ++AA     I +TD ++L+ A E +     A + 
Sbjct: 9  IEMHCHTSEYSSCSGVAAV-NLVRQVAAKNLQGIVLTDHHHLWEASELADVRRRAEVP 65


>gi|154151412|ref|YP_001405030.1| hypothetical protein Mboo_1872 [Candidatus Methanoregula boonei
           6A8]
 gi|153999964|gb|ABS56387.1| Protein of unknown function DUF655 [Methanoregula boonei 6A8]
          Length = 187

 Score = 38.8 bits (89), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 25/49 (51%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           L  + G+G      ++E+   KPF+S  D  +R+ S     +++E+ + 
Sbjct: 123 LHLLPGIGKKLMWEVLESRNRKPFESFADISTRIKSLPHPEKMIEARIL 171


>gi|225028153|ref|ZP_03717345.1| hypothetical protein EUBHAL_02425 [Eubacterium hallii DSM 3353]
 gi|224954465|gb|EEG35674.1| hypothetical protein EUBHAL_02425 [Eubacterium hallii DSM 3353]
          Length = 313

 Score = 38.4 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  H++ S  +G  S    +          +AITD +
Sbjct: 9  LHGHTNRS--DGNDSPVEYIRHAVHRGVKILAITDHD 43


>gi|83716502|ref|YP_440157.1| phosphotransferase domain-containing protein [Burkholderia
           thailandensis E264]
 gi|167616864|ref|ZP_02385495.1| PHP domain N-terminal region family protein [Burkholderia
           thailandensis Bt4]
 gi|257140786|ref|ZP_05589048.1| phosphotransferase domain-containing protein [Burkholderia
           thailandensis E264]
 gi|83650327|gb|ABC34391.1| PHP domain N-terminal region family [Burkholderia thailandensis
           E264]
          Length = 614

 Score = 38.4 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H++ +  +G  SL ++  +        +AITD 
Sbjct: 343 LHAHTNAT--DGRDSLQDMALEARKRGLDYLAITDH 376


>gi|298505417|gb|ADI84140.1| phosphotransferase, PolIIIAc domain-containing, putative
          [Geobacter sulfurreducens KN400]
          Length = 508

 Score = 38.4 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 12 VHLQVHS-SYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          + +  H+  YS   G  ++ N++ ++AA     I +TD ++L+ A E +     A + 
Sbjct: 3  IEMHCHTSEYSSCSGVAAV-NLVRQVAAKNLQGIVLTDHHHLWEASELADVRRRAEVP 59


>gi|242309633|ref|ZP_04808788.1| competence protein ComEA [Helicobacter pullorum MIT 98-5489]
 gi|239523634|gb|EEQ63500.1| competence protein ComEA [Helicobacter pullorum MIT 98-5489]
          Length = 94

 Score = 38.4 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L +IKG+G   A+ I++     P  S++D     + K    +++E +
Sbjct: 42  LMSIKGIGEAKAQAIIDYREKTPLKSIDDLK---NIKGFGPKIIEKI 85


>gi|33592251|ref|NP_879895.1| hypothetical protein BP1116 [Bordetella pertussis Tohama I]
 gi|33571896|emb|CAE41414.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
          Length = 281

 Score = 38.4 bits (88), Expect = 5.8,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          V L  HS+ S  +G++    +  +  A+     A+TD + +   
Sbjct: 8  VDLHCHSTVS--DGSMPPAAVARRAHANGVDVWALTDHDEIGGV 49


>gi|307717326|gb|ADN88716.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717328|gb|ADN88717.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717342|gb|ADN88724.1| DNA polymerase III [Listeria marthii]
 gi|307717348|gb|ADN88727.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717364|gb|ADN88735.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717370|gb|ADN88738.1| DNA polymerase III [Listeria marthii]
 gi|307717372|gb|ADN88739.1| DNA polymerase III [Listeria marthii]
 gi|307717376|gb|ADN88741.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717382|gb|ADN88744.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717384|gb|ADN88745.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717398|gb|ADN88752.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717404|gb|ADN88755.1| DNA polymerase III [Listeria monocytogenes]
          Length = 231

 Score = 38.4 bits (88), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 2/74 (2%)

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           I+                   +G       P    +   TA G + L +L++   + +  
Sbjct: 157 IKDAKEMHDIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYF 215

Query: 126 KQSVRICLSWLQEI 139
            +  RI  S L+++
Sbjct: 216 YRVPRIPRSQLKKL 229


>gi|167838923|ref|ZP_02465700.1| PHP domain N-terminal region family protein [Burkholderia
           thailandensis MSMB43]
          Length = 616

 Score = 38.4 bits (88), Expect = 5.9,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H++ +  +G  SL+++  +        +AITD 
Sbjct: 343 LHAHTNAT--DGRDSLHDMALEARKRGLDYLAITDH 376


>gi|55377171|ref|YP_135021.1| hypothetical protein rrnAC0258 [Haloarcula marismortui ATCC 43049]
 gi|55229896|gb|AAV45315.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 190

 Score = 38.4 bits (88), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           L  + G+G      I++    KPF+S ED   RV      +  L   + 
Sbjct: 121 LNLLPGIGKKLRNTILDERKRKPFESFEDLEKRVSGLHSPKETLVERIL 169


>gi|159904285|ref|YP_001551629.1| lysyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
 gi|238687128|sp|A9BD62|SYK_PROM4 RecName: Full=Lysyl-tRNA synthetase; AltName: Full=Lysine--tRNA
            ligase; Short=LysRS
 gi|159889461|gb|ABX09675.1| Lysyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
          Length = 503

 Score = 38.4 bits (88), Expect = 5.9,   Method: Composition-based stats.
 Identities = 7/60 (11%), Positives = 19/60 (31%), Gaps = 9/60 (15%)

Query: 972  KPILRKMGIKGYEESVATIRGNN----IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            +  +         E      G      + +A  V+S++        ++ + T S+ +   
Sbjct: 26   RFEVTHKAAVLQVEHQDLANGQERQLEVCVAGRVISRRVMG-----KLAFFTLSDESGSI 80


>gi|260584663|ref|ZP_05852409.1| competence protein ComEA [Granulicatella elegans ATCC 700633]
 gi|260157686|gb|EEW92756.1| competence protein ComEA [Granulicatella elegans ATCC 700633]
          Length = 201

 Score = 38.4 bits (88), Expect = 6.1,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886
           L  IKG+G   A  I++   +   F + ED        K     +ES V
Sbjct: 150 LQTIKGIGKKKAEAILQYRKEHGAFRTKEDLLQVKGIGKKALEAIESQV 198


>gi|210615407|ref|ZP_03290534.1| hypothetical protein CLONEX_02750 [Clostridium nexile DSM 1787]
 gi|210150256|gb|EEA81265.1| hypothetical protein CLONEX_02750 [Clostridium nexile DSM 1787]
          Length = 428

 Score = 38.4 bits (88), Expect = 6.1,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 8/137 (5%)

Query: 216 NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTV 275
                   D    D+   +    +     +            + M     ++PEA+ +T 
Sbjct: 257 EVSEFDTLDAYKADIKAKIKEQKIADGNRKKEDQAVEKAVANATM-----EIPEAMIDTQ 311

Query: 276 E--IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
              +A+  +  +Q     + ++ +       +    ELR +AV  +E RL   AIAK  +
Sbjct: 312 VNQMAQDFAQRIQQQGLSMEQYFQFTGMTA-ESMMEELRPQAVKRIETRLVLEAIAKAEN 370

Query: 334 AQDYRQRLDFELNVIAR 350
            +   +R+D EL  +A 
Sbjct: 371 IEITDERIDEELAKMAE 387


>gi|169837717|ref|ZP_02870905.1| hypothetical protein cdivTM_11567 [candidate division TM7
           single-cell isolate TM7a]
          Length = 49

 Score = 38.4 bits (88), Expect = 6.1,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 18/40 (45%)

Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
             + +D+  +     +P+   + + + +LEG  R    HA
Sbjct: 8   NTLVEDADLKHEYETNPTAKTVYDFASQLEGTIRSHGVHA 47


>gi|307717354|gb|ADN88730.1| DNA polymerase III [Listeria innocua]
          Length = 231

 Score = 38.4 bits (88), Expect = 6.2,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 68  QPIIGCQLDIDMQDNLKMTN----QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
           + I   +   D++ +  + +                 +   T  G + L +L++   + +
Sbjct: 155 KLIKDAKEMHDIEFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLITMSNI-N 213

Query: 124 QGKQSVRICLSWLQEI 139
              +  RI  S L+++
Sbjct: 214 YFYRVPRIPRSQLKKL 229


>gi|269837329|ref|YP_003319557.1| PHP domain-containing protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269786592|gb|ACZ38735.1| PHP domain protein [Sphaerobacter thermophilus DSM 20745]
          Length = 554

 Score = 38.4 bits (88), Expect = 6.2,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS +S  +G  ++  + +         + I D 
Sbjct: 324 LHLHSEWS--DGRATILQLAEAARDRGYEYLCIADH 357


>gi|197303194|ref|ZP_03168236.1| hypothetical protein RUMLAC_01917 [Ruminococcus lactaris ATCC
          29176]
 gi|197297734|gb|EDY32292.1| hypothetical protein RUMLAC_01917 [Ruminococcus lactaris ATCC
          29176]
          Length = 273

 Score = 38.4 bits (88), Expect = 6.2,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           +H+ +S  +   ++ ++LD         + ITD  +L
Sbjct: 7  HMHTCFSA-DSEATVTSMLDAAVEKGLEGVCITDHMDL 43


>gi|25989628|gb|AAN28958.1| UvrB [Corynebacterium glutamicum]
          Length = 698

 Score = 38.4 bits (88), Expect = 6.2,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 80/260 (30%), Gaps = 27/260 (10%)

Query: 258 SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
            E+        + ++    I       ++    I  R           E   +      A
Sbjct: 230 EELAVRIEFFGDEIDALYYIHPLTGDTIRQVNEI--RIFPATHYVAGPERMEKAVADIKA 287

Query: 318 GLEVRLAQGAIA-KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            LEVRLA      K   AQ  R R +++L +I ++ F            +++  +   G 
Sbjct: 288 ELEVRLADLENRGKLLEAQRLRMRTEYDLEMIEQVGFCSGIE------NYSRHID---GR 338

Query: 377 GRGSGAGSVTAY----ALTI---TDIDPLRFSLLFERFLNPDRM-SMPDFDIDFCQDRRD 428
           G G+   ++  Y     LTI   + +   +   +FE  ++  R      F +    D R 
Sbjct: 339 GEGTAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEFGFRLPSAMDNRP 398

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
                   + G   V    T G  +  AA  +    +  P   VD      P     P  
Sbjct: 399 LTWEEFDERRGQT-VFMSATPGKFEIAAADGEFVEQVIRPTGLVD------PKVTVKPTK 451

Query: 489 LQAIADDSRFREARLADPSV 508
            Q        R+    D  V
Sbjct: 452 GQIDDLIHEIRQRTDKDERV 471


>gi|11499145|ref|NP_070379.1| hypothetical protein AF1550 [Archaeoglobus fulgidus DSM 4304]
 gi|2649010|gb|AAB89696.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 213

 Score = 38.4 bits (88), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L VHS +S  +G L  + I  ++ A      AITD 
Sbjct: 4  LHVHSVFS--DGELIPSEIARRMYAAGNKGFAITDH 37


>gi|327393554|dbj|BAK10976.1| histidinol phosphatase and related hydrolase of PHP family
          protein YcdX [Pantoea ananatis AJ13355]
          Length = 245

 Score = 38.4 bits (88), Expect = 6.4,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-NLFSALEFS 59
          V L +H+  S      +L++ + +   +     AITD   ++  A  + 
Sbjct: 4  VDLHMHTVAS-THAYSTLHDYVAQAKLNGLKLFAITDHGPDMADAPHYW 51


>gi|291617109|ref|YP_003519851.1| YcdX [Pantoea ananatis LMG 20103]
 gi|291152139|gb|ADD76723.1| YcdX [Pantoea ananatis LMG 20103]
          Length = 250

 Score = 38.4 bits (88), Expect = 6.4,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-NLFSALEFS 59
          V L +H+  S      +L++ + +   +     AITD   ++  A  + 
Sbjct: 9  VDLHMHTVAS-THAYSTLHDYVAQAKLNGLKLFAITDHGPDMADAPHYW 56


>gi|315122262|ref|YP_004062751.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495664|gb|ADR52263.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 242

 Score = 38.4 bits (88), Expect = 6.6,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSL----DFLAQRGVKVDLSLIPFDDHETYHLLTT 614
           +M+ I      KFDFL L++   + +++    D +        +     D   T   L  
Sbjct: 120 DMEPILGVKFFKFDFLDLESWEFIHQAIGGNPDLVLSDMAYPTIGHRKTDHLRTMS-LCE 178

Query: 615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
             T    ++ + G    ++  Q    +DI+ L+
Sbjct: 179 AATFFALEMLNEGGDFLVKTFQGGTTQDILCLL 211


>gi|315426861|dbj|BAJ48482.1| DNA polymerase II small subunit [Candidatus Caldiarchaeum
            subterraneum]
          Length = 492

 Score = 38.4 bits (88), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            R++      E  A   G    +A M++SK++     G+    +T  +P+ + E  
Sbjct: 125  RRLEFTPVSEVPAIRDGGETVVAVMILSKKEGP---GN--IKITCDDPSGQLEVV 174


>gi|150020557|ref|YP_001305911.1| phosphotransferase domain-containing protein [Thermosipho
          melanesiensis BI429]
 gi|149793078|gb|ABR30526.1| PHP C-terminal domain protein [Thermosipho melanesiensis BI429]
          Length = 267

 Score = 38.4 bits (88), Expect = 6.7,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          V   +H++ S  +G  S  ++++ +        +ITD + +   
Sbjct: 3  VDFHLHTTAS--DGTFSPEDLINLLKEKNIEYFSITDHDTVDGI 44


>gi|169333945|ref|ZP_02861138.1| hypothetical protein ANASTE_00331 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169259510|gb|EDS73476.1| hypothetical protein ANASTE_00331 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 290

 Score = 38.4 bits (88), Expect = 6.8,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L +HS+ S  +G +S+++I+D    +    IAI D  ++ +       A    I  I 
Sbjct: 3  VDLHIHSNASS-DGEVSVSDIIDMSIKEDLKYIAIADHESIDNVQNALDYAKDKDIAVIP 61

Query: 72 GCQLDIDMQDNL 83
            ++ +  +  L
Sbjct: 62 AAEIFVSHKGKL 73


>gi|298246489|ref|ZP_06970295.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297553970|gb|EFH87835.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 286

 Score = 38.4 bits (88), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L +H++YS  +G      +++ +  ++   +A+TD + +    E  + A + G+  + 
Sbjct: 14 VDLHMHTTYS--DGRWPAEQLINYLVEEKFDLVAVTDHDRVDKVAEIRELAASKGLPVLP 71

Query: 72 GCQLDI 77
          G ++  
Sbjct: 72 GVEITC 77


>gi|257459354|ref|ZP_05624466.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Campylobacter gracilis RM3268]
 gi|257443247|gb|EEV18378.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Campylobacter gracilis RM3268]
          Length = 155

 Score = 38.4 bits (88), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
           L A+ G+G   A+ I++   D  F  +ED    +      R  L     A
Sbjct: 31  LMALPGIGEAKAQAIIDYRKDNKFKDIED-IKNIKGIGDKRFELIKDDLA 79


>gi|126179902|ref|YP_001047867.1| hypothetical protein Memar_1959 [Methanoculleus marisnigri JR1]
 gi|125862696|gb|ABN57885.1| Protein of unknown function DUF655 [Methanoculleus marisnigri JR1]
          Length = 187

 Score = 38.4 bits (88), Expect = 7.0,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           L  + G+G      I+E    KPF+S  D   R+ S     R++ S + 
Sbjct: 123 LHLLPGIGKKLMWEIIEQRGKKPFESFADISGRIKSLPHPDRMIVSRIL 171


>gi|323466776|gb|ADX70463.1| DNA uptake protein and related DNA-binding protein-like protein
           [Lactobacillus helveticus H10]
          Length = 231

 Score = 38.4 bits (88), Expect = 7.2,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 838 SLAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
            L  + G+G   A  I+     + PF  +ED   
Sbjct: 180 GLQKLTGIGEKKAEQIIAYREQNGPFKKVEDLMQ 213


>gi|260101773|ref|ZP_05752010.1| competence protein ComEA [Lactobacillus helveticus DSM 20075]
 gi|260084417|gb|EEW68537.1| competence protein ComEA [Lactobacillus helveticus DSM 20075]
          Length = 233

 Score = 38.4 bits (88), Expect = 7.2,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 838 SLAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
            L  + G+G   A  I+     + PF  +ED   
Sbjct: 182 GLQKLTGIGEKKAEQIIAYREQNGPFKKVEDLMQ 215


>gi|161507341|ref|YP_001577295.1| competence protein ComEA [Lactobacillus helveticus DPC 4571]
 gi|160348330|gb|ABX27004.1| Competence protein ComEA [Lactobacillus helveticus DPC 4571]
          Length = 231

 Score = 38.4 bits (88), Expect = 7.2,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 838 SLAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
            L  + G+G   A  I+     + PF  +ED   
Sbjct: 180 GLQKLTGIGEKKAEQIIAYREQNGPFKKVEDLMQ 213


>gi|111610192|gb|ABH11584.1| DNA uptake protein and related DNA-binding protein-like protein
           [Lactobacillus helveticus CNRZ32]
 gi|328468541|gb|EGF39543.1| competence protein ComEA [Lactobacillus helveticus MTCC 5463]
          Length = 231

 Score = 38.4 bits (88), Expect = 7.2,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 838 SLAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
            L  + G+G   A  I+     + PF  +ED   
Sbjct: 180 GLQKLTGIGEKKAEQIIAYREQNGPFKKVEDLMQ 213


>gi|73669127|ref|YP_305142.1| hypothetical protein Mbar_A1616 [Methanosarcina barkeri str.
          Fusaro]
 gi|72396289|gb|AAZ70562.1| conserved hypothetical protein [Methanosarcina barkeri str.
          Fusaro]
          Length = 334

 Score = 38.4 bits (88), Expect = 7.2,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 7/56 (12%)

Query: 2  TQYLEKSPSFVHLQVHSSYSL-----LEGALSLNNILDKIAADQQPAIAITDTNNL 52
           + +E+      L VH++ S       +  L   ++ +K        +  TD + +
Sbjct: 19 VELMEEGWRRADLHVHTTCSFDVLPVRD--LHPESLYEKALKMGMDYVTFTDHDTI 72


>gi|221632593|ref|YP_002521814.1| PHP domain-containing protein [Thermomicrobium roseum DSM 5159]
 gi|221156427|gb|ACM05554.1| PHP domain protein [Thermomicrobium roseum DSM 5159]
          Length = 581

 Score = 38.4 bits (88), Expect = 7.4,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH+ +S  +G   L  + +   A     + I+D 
Sbjct: 341 LHVHTDWS--DGHEPLERMCEAARARGYEYLVISDH 374


>gi|88604256|ref|YP_504434.1| hypothetical protein Mhun_3028 [Methanospirillum hungatei JF-1]
 gi|88189718|gb|ABD42715.1| Protein of unknown function DUF655 [Methanospirillum hungatei JF-1]
          Length = 186

 Score = 38.4 bits (88), Expect = 7.4,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           L  + G+G      I+E    K FDS  D   R+ +     R++ + + 
Sbjct: 122 LHLLPGIGKKLMWEIIEEREKKQFDSFADISQRIKTIPHPDRMILNRIL 170


>gi|72383033|ref|YP_292388.1| lysyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
 gi|72002883|gb|AAZ58685.1| lysyl-tRNA synthetase, class-2 [Prochlorococcus marinus str. NATL2A]
          Length = 513

 Score = 38.4 bits (88), Expect = 7.4,   Method: Composition-based stats.
 Identities = 5/40 (12%), Positives = 15/40 (37%), Gaps = 5/40 (12%)

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
               + + + +A  V S++        ++ + T S+     
Sbjct: 53   GEEKKDEVSIAGRVTSRRVMG-----KLAFFTLSDETGII 87


>gi|291544579|emb|CBL17688.1| Predicted metal-dependent phosphoesterases (PHP family)
           [Ruminococcus sp. 18P13]
          Length = 238

 Score = 38.0 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 14/99 (14%)

Query: 14  LQVHSSYS------LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           L +HS  S      +L      +NI+          IA+TD N   +   F + A A GI
Sbjct: 8   LHLHSCLSPCGDDDML-----PSNIVGMAVVKGLDVIALTDHNTSRNCPAFLELAEAYGI 62

Query: 68  QPIIGCQLDIDMQDN---LKMTNQGKTPFPTVPSIVLLV 103
             I G +L    + +   L  T +G   F       +  
Sbjct: 63  LAIPGMELCTSEEVHVVCLFPTLEGAMDFDRYVHRRIPP 101


>gi|226360119|ref|YP_002777897.1| excinuclease ABC subunit B [Rhodococcus opacus B4]
 gi|226238604|dbj|BAH48952.1| UvrABC system protein B [Rhodococcus opacus B4]
          Length = 720

 Score = 38.0 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 82/275 (29%), Gaps = 45/275 (16%)

Query: 252 HYLKNRSEMV---SIFSDLPEAL-------ENTVEIARRCSFILQVHAPILPRFIEKECD 301
             + +  E+      F D  EAL        + V            H    P  +E+   
Sbjct: 224 EIIPSYEELAVRIEFFGDEIEALYYLHPLTGDVVRKVDSVRIFPATHYVAGPERMERAVK 283

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
           DI+ E E  L +    G           K   AQ  R R  ++L +I ++ F        
Sbjct: 284 DIEAELEERLADLENKG-----------KLLEAQRLRMRTQYDLEMIKQVGFCSGIE--- 329

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAY-----ALTI--TDIDPLRFSLLFERFLNPDRM- 413
               +++  +   G G G+   ++  Y      L I  + +   +   ++E  ++  R  
Sbjct: 330 ---NYSRHID---GRGPGTAPATLIDYFPEDFLLVIDESHVTVPQIGAMYEGDMSRKRNL 383

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
               F +    D R         + G   V    T G  +   A  +    +  P   VD
Sbjct: 384 VEFGFRLPSATDNRPLTWEEFTQRIGQT-VYLSATPGKYELGQAGGEFVEQVIRPTGLVD 442

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
                 P     P   Q        RE    D  V
Sbjct: 443 ------PEVVVKPTKGQIDDLVHEIRERADRDERV 471


>gi|309789534|ref|ZP_07684116.1| Helix-hairpin-helix DNA-binding class 1 [Oscillochloris trichoides
           DG6]
 gi|308228422|gb|EFO82068.1| Helix-hairpin-helix DNA-binding class 1 [Oscillochloris trichoides
           DG6]
          Length = 211

 Score = 38.0 bits (87), Expect = 7.5,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L  + G+G   A  I+       PF S+ED   
Sbjct: 160 LEELPGIGQALAARIVAYREQQGPFSSVEDLQQ 192


>gi|241258821|ref|YP_002978705.1| NmrA family protein [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240863291|gb|ACS60954.1| NmrA family protein [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 300

 Score = 38.0 bits (87), Expect = 7.6,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 14/150 (9%)

Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA--VAHSTVVSQKDRPRVTPD 251
           R     + ++A   +    A  +   L+  DY AH  +         ++ ++ R      
Sbjct: 84  RQMLQSIERMAEAVD----AAQSPRVLAISDYGAHLTIDTGITRLFRLMEERFRQCSARM 139

Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            +L++   M +    L        +IA     +  +H P+   F      DI     + L
Sbjct: 140 VFLRSAEHMENWARYL--------KIANETGVMPSMHQPLARPFPTVSAADIGDMAADLL 191

Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
                 G   R+  G   + Y A +    L
Sbjct: 192 LADEDHGPSPRIVHGEGPREYTALEIAAAL 221


>gi|323490898|ref|ZP_08096093.1| fructose 1,6-bisphosphatase II [Planococcus donghaensis MPA1U2]
 gi|323395378|gb|EGA88229.1| fructose 1,6-bisphosphatase II [Planococcus donghaensis MPA1U2]
          Length = 321

 Score = 38.0 bits (87), Expect = 7.6,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 19/144 (13%)

Query: 44  IAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT-----------P 92
           +AI D  NL +A +   +  A G + +    ++  + DNL+   + K             
Sbjct: 104 LAIADRGNLLNAPDMYMEKIAVGPESVGKIDINAPVIDNLRAVAKAKNKNIEEVVATLMD 163

Query: 93  FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ---GKQSVRICLSWLQEIGTEGLIMLTG 149
            P    I+  +  A G +  I+L+S   +            + + +      EG+I   G
Sbjct: 164 RPRHQDIIDQIR-AAGAR--IKLISDGDVAGAINTAFDQTGVDILFGIGGAPEGVIAAVG 220

Query: 150 --GSSGPIDRAFFFNSSQVAEKRL 171
                G I       + + A++ +
Sbjct: 221 LKCLGGEIQGKLLPQNEEEAQRCI 244


>gi|304440493|ref|ZP_07400380.1| competence protein comEA [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370971|gb|EFM24590.1| competence protein comEA [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 193

 Score = 38.0 bits (87), Expect = 7.6,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           L +I GVG+  A  I++   + PF+++ED  +     K     ++  +
Sbjct: 143 LTSIPGVGSKMADKIIKYRQEHPFNTIEDLLNITGIGKKKFEEIKLYI 190


>gi|19552585|ref|NP_600587.1| excinuclease ABC subunit B [Corynebacterium glutamicum ATCC 13032]
 gi|62390254|ref|YP_225656.1| excinuclease ABC subunit B [Corynebacterium glutamicum ATCC 13032]
 gi|41325591|emb|CAF21380.1| EXCINUCLEASE ABC SUBUNIT B [Corynebacterium glutamicum ATCC 13032]
          Length = 720

 Score = 38.0 bits (87), Expect = 7.6,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 80/260 (30%), Gaps = 27/260 (10%)

Query: 258 SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
            E+        + ++    I       ++    I  R           E   +      A
Sbjct: 251 EELAVRIEFFGDEIDALYYIHPLTGDTIRQVNEI--RIFPATHYVAGPERMEKAVADIKA 308

Query: 318 GLEVRLAQGAIA-KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            LEVRLA      K   AQ  R R +++L +I ++ F            +++  +   G 
Sbjct: 309 ELEVRLADLENRGKLLEAQRLRMRTEYDLEMIEQVGFCSGIE------NYSRHID---GR 359

Query: 377 GRGSGAGSVTAY----ALTI---TDIDPLRFSLLFERFLNPDRM-SMPDFDIDFCQDRRD 428
           G G+   ++  Y     LTI   + +   +   +FE  ++  R      F +    D R 
Sbjct: 360 GEGTAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEFGFRLPSAMDNRP 419

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
                   + G   V    T G  +  AA  +    +  P   VD      P     P  
Sbjct: 420 LTWEEFDERRGQT-VFMSATPGKFEIAAADGEFVEQVIRPTGLVD------PKVTVKPTK 472

Query: 489 LQAIADDSRFREARLADPSV 508
            Q        R+    D  V
Sbjct: 473 GQIDDLIHEIRQRTDKDERV 492


>gi|315425095|dbj|BAJ46767.1| DNA polymerase II small subunit [Candidatus Caldiarchaeum
            subterraneum]
 gi|315428039|dbj|BAJ49627.1| DNA polymerase II small subunit [Candidatus Caldiarchaeum
            subterraneum]
          Length = 492

 Score = 38.0 bits (87), Expect = 7.7,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            R++      E  A   G    +A M++SK++     G+    +T  +P+ + E  
Sbjct: 125  RRLEFTPVSEVPAIRDGGETVVAVMILSKKEGP---GN--IKITCDDPSGQLEVV 174


>gi|124026775|ref|YP_001015890.1| lysyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
 gi|123961843|gb|ABM76626.1| Lysyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
          Length = 513

 Score = 38.0 bits (87), Expect = 7.7,   Method: Composition-based stats.
 Identities = 5/40 (12%), Positives = 15/40 (37%), Gaps = 5/40 (12%)

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
               + + + +A  V S++        ++ + T S+     
Sbjct: 53   GEEKKDEVSIAGRVTSRRVMG-----KLAFFTLSDETGII 87


>gi|15643567|ref|NP_228613.1| hypothetical protein TM0804 [Thermotoga maritima MSB8]
 gi|18203585|sp|Q9WZR1|HIS9_THEMA RecName: Full=Probable histidinol-phosphatase; Short=HolPase
 gi|4981334|gb|AAD35886.1|AE001748_2 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 233

 Score = 38.0 bits (87), Expect = 7.7,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +HS++S  +G   +++I+ ++         ITD 
Sbjct: 5  HLHSTFSY-DGKAEIDDIISQVQKLGIEHFCITDH 38


>gi|307717338|gb|ADN88722.1| DNA polymerase III [Listeria welshimeri]
 gi|307717340|gb|ADN88723.1| DNA polymerase III [Listeria welshimeri]
 gi|307717362|gb|ADN88734.1| DNA polymerase III [Listeria welshimeri]
 gi|307717368|gb|ADN88737.1| DNA polymerase III [Listeria welshimeri]
 gi|307717392|gb|ADN88749.1| DNA polymerase III [Listeria welshimeri]
          Length = 231

 Score = 38.0 bits (87), Expect = 7.9,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 2/74 (2%)

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           I+                   +G       P    +   T  G + L +L++   + +  
Sbjct: 157 IKDAKEMHDINFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLITMSNI-NYF 215

Query: 126 KQSVRICLSWLQEI 139
            +  RI  S L+++
Sbjct: 216 YRVPRIPRSQLKKL 229


>gi|218782703|ref|YP_002434021.1| PHP domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218764087|gb|ACL06553.1| PHP domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 384

 Score = 38.0 bits (87), Expect = 7.9,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 14  LQVHSS-YSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
           L VH++  S    A  ++ I+ +        + +TD N +++A
Sbjct: 180 LHVHTAPASPCASA-PIDEIIREAKELGVHGMVVTDHNYVWTA 221


>gi|86740498|ref|YP_480898.1| phosphoesterase PHP-like protein [Frankia sp. CcI3]
 gi|86567360|gb|ABD11169.1| Phosphoesterase PHP-like [Frankia sp. CcI3]
          Length = 277

 Score = 38.0 bits (87), Expect = 7.9,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 21/115 (18%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA----------------LE 57
           L  ++S S   G+L  + ++ +        +AITD + +                   +E
Sbjct: 4   LHAYTSES--GGSLMPHELVAQAVVAGVKVLAITDRDTVAGIDPAAAVLPARMTLVPGVE 61

Query: 58  FSQKACAAG-IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS--TAEGY 109
            S +A   G  +P+       D  D       G+            V     EGY
Sbjct: 62  ISCQAVVGGRPRPVRLLSYLFDPDDRAVSELLGRARDSAELRARRAVRLLHMEGY 116


>gi|222100748|ref|YP_002535316.1| histidinol-phosphatase [Thermotoga neapolitana DSM 4359]
 gi|221573138|gb|ACM23950.1| histidinol-phosphatase [Thermotoga neapolitana DSM 4359]
          Length = 233

 Score = 38.0 bits (87), Expect = 8.0,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +HS++S  +G   + +I+ ++         ITD 
Sbjct: 5  HLHSTFSY-DGKAEVEDIIAQVQKLGINHFCITDH 38


>gi|21324137|dbj|BAB98762.1| Helicase subunit of the DNA excision repair complex
           [Corynebacterium glutamicum ATCC 13032]
          Length = 699

 Score = 38.0 bits (87), Expect = 8.0,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 80/260 (30%), Gaps = 27/260 (10%)

Query: 258 SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
            E+        + ++    I       ++    I  R           E   +      A
Sbjct: 230 EELAVRIEFFGDEIDALYYIHPLTGDTIRQVNEI--RIFPATHYVAGPERMEKAVADIKA 287

Query: 318 GLEVRLAQGAIA-KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            LEVRLA      K   AQ  R R +++L +I ++ F            +++  +   G 
Sbjct: 288 ELEVRLADLENRGKLLEAQRLRMRTEYDLEMIEQVGFCSGIE------NYSRHID---GR 338

Query: 377 GRGSGAGSVTAY----ALTI---TDIDPLRFSLLFERFLNPDRM-SMPDFDIDFCQDRRD 428
           G G+   ++  Y     LTI   + +   +   +FE  ++  R      F +    D R 
Sbjct: 339 GEGTAPATLIDYFPEDFLTIIDESHVTVPQIGGMFEGDMSRKRNLVEFGFRLPSAMDNRP 398

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
                   + G   V    T G  +  AA  +    +  P   VD      P     P  
Sbjct: 399 LTWEEFDERRGQT-VFMSATPGKFEIAAADGEFVEQVIRPTGLVD------PKVTVKPTK 451

Query: 489 LQAIADDSRFREARLADPSV 508
            Q        R+    D  V
Sbjct: 452 GQIDDLIHEIRQRTDKDERV 471


>gi|108803335|ref|YP_643272.1| PHP-like protein [Rubrobacter xylanophilus DSM 9941]
 gi|108764578|gb|ABG03460.1| PHP-like protein [Rubrobacter xylanophilus DSM 9941]
          Length = 574

 Score = 38.0 bits (87), Expect = 8.3,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H+  +  +G   L+ + +         +A+TD 
Sbjct: 341 LHSHT--TATDGRSGLHEMAEAARERGYEYLAVTDH 374


>gi|302529177|ref|ZP_07281519.1| PHP domain-containing protein [Streptomyces sp. AA4]
 gi|302438072|gb|EFL09888.1| PHP domain-containing protein [Streptomyces sp. AA4]
          Length = 327

 Score = 38.0 bits (87), Expect = 8.5,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 73/221 (33%), Gaps = 26/221 (11%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             HS +S  +G   +  + +         I +TD +         +   A G+ P    +
Sbjct: 100 HTHSDWS--DGGSPILEMAETARDLGHEWIVLTDHS--------PRLTVARGLSP----E 145

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR-----MYLLDQGKQSV 129
                 D +   N+   PF  +  I + +       +  +L+ R       +  + +   
Sbjct: 146 RLRAQMDEVARVNEQLAPFRLLHGIEVDILDDGALDQTEQLLDRLDFVVASVHSKLRMPA 205

Query: 130 R-ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
           R +    L  +    + +L   +   +       S   +EK     ++       V ++ 
Sbjct: 206 REMTPRMLAAVENPHVRVLGHCTGRLVGGRSRPESQFNSEKVFTACRENG-----VAVEI 260

Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
           +   DR     ++++ A          +++    + D++A+
Sbjct: 261 NSRPDRLDPPMRLLRQAVELGCEFAIDSDAHAPGQLDWQAY 301


>gi|307717390|gb|ADN88748.1| DNA polymerase III [Listeria welshimeri]
          Length = 231

 Score = 38.0 bits (87), Expect = 8.6,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 2/74 (2%)

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           I+                   +G+      P    +   T  G + L +L++   + +  
Sbjct: 157 IKDAKEMHDINFHDSLNDYMGEGEAYKRARPFHATIYAQTDVGLKNLFKLITMSNI-NYF 215

Query: 126 KQSVRICLSWLQEI 139
            +  RI  S L+++
Sbjct: 216 YRVPRIPRSQLKKL 229


>gi|310828864|ref|YP_003961221.1| hypothetical protein ELI_3296 [Eubacterium limosum KIST612]
 gi|308740598|gb|ADO38258.1| hypothetical protein ELI_3296 [Eubacterium limosum KIST612]
          Length = 426

 Score = 38.0 bits (87), Expect = 8.7,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 11/138 (7%)

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            DI   +   + V   ++ K+  E++  +     +  K   RD         +Q + + K
Sbjct: 2   LDIKLLRTNPELVKENIRKKFQDEKLVLVDEVVEMDRK--YRDSKTEGDTLRAQRNTISK 59

Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            I    +     +A   +    +    +  ++ L  +  KLEG  R        +++   
Sbjct: 60  QIGGFMSKGQKDEA---EKAKAQVVEINKQLEELEALEAKLEGDIRER------MLVIPN 110

Query: 538 PLSQLVPMYRDVRSDLPV 555
            +   VP+ RD   ++ V
Sbjct: 111 IIDPSVPIGRDDSENVEV 128


>gi|282163395|ref|YP_003355780.1| hypothetical protein MCP_0725 [Methanocella paludicola SANAE]
 gi|282155709|dbj|BAI60797.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 190

 Score = 38.0 bits (87), Expect = 9.0,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 18/49 (36%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           L  + G+G      I++      F S  D  +R+       +++   + 
Sbjct: 127 LELLPGIGKKMMWAIIDERKKGKFKSFADIETRIKGLHHPDKLIAKRIE 175


>gi|307717344|gb|ADN88725.1| DNA polymerase III [Listeria innocua]
 gi|307717350|gb|ADN88728.1| DNA polymerase III [Listeria innocua]
 gi|307717352|gb|ADN88729.1| DNA polymerase III [Listeria innocua]
 gi|307717386|gb|ADN88746.1| DNA polymerase III [Listeria innocua]
          Length = 231

 Score = 38.0 bits (87), Expect = 9.5,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 68  QPIIGCQLDIDMQDNLKMTN----QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
           + I   +   D++ +  + +                 +   T  G + L +L++   + +
Sbjct: 155 KLIKDAKEMHDIEFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLITMSNI-N 213

Query: 124 QGKQSVRICLSWLQE 138
              +  RI  S L++
Sbjct: 214 YFYRVPRIPRSQLKK 228


>gi|307717346|gb|ADN88726.1| DNA polymerase III [Listeria innocua]
 gi|307717356|gb|ADN88731.1| DNA polymerase III [Listeria innocua]
 gi|307717358|gb|ADN88732.1| DNA polymerase III [Listeria innocua]
 gi|307717360|gb|ADN88733.1| DNA polymerase III [Listeria innocua]
 gi|307717374|gb|ADN88740.1| DNA polymerase III [Listeria innocua]
 gi|307717388|gb|ADN88747.1| DNA polymerase III [Listeria innocua]
          Length = 231

 Score = 37.7 bits (86), Expect = 9.7,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 68  QPIIGCQLDIDMQDNLKMTN----QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
           + I   +   D++ +  + +                 +   T  G + L +L++   + +
Sbjct: 155 KLIKDAKEMHDIEFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLITMSNI-N 213

Query: 124 QGKQSVRICLSWLQE 138
              +  RI  S L++
Sbjct: 214 YFYRVPRIPRSQLKK 228


>gi|225387818|ref|ZP_03757582.1| hypothetical protein CLOSTASPAR_01588 [Clostridium asparagiforme
          DSM 15981]
 gi|225046104|gb|EEG56350.1| hypothetical protein CLOSTASPAR_01588 [Clostridium asparagiforme
          DSM 15981]
          Length = 258

 Score = 37.7 bits (86), Expect = 9.7,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 14/55 (25%)

Query: 12 VHLQVHS-----SYS-LLEGALSLNNILDKIAADQQPAIAITDTN-NLFSALEFS 59
          V    H+     +YS +LEG       +          +A+TD    +  A    
Sbjct: 24 VETHYHTIASGHAYSTVLEG-------VMYAKKYGMKGLAVTDHGPAMPGAPHIW 71


>gi|147920079|ref|YP_686162.1| metal-dependent phosphoesterase [uncultured methanogenic archaeon
          RC-I]
 gi|110621558|emb|CAJ36836.1| putative metal-dependent phosphoesterase (PHP family) [uncultured
          methanogenic archaeon RC-I]
          Length = 285

 Score = 37.7 bits (86), Expect = 9.7,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           VH+  S  +G  +   ++   A      ++ITD +
Sbjct: 6  HVHTCLS--DGLETPETVVSLAAESGIRLLSITDHD 39


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.311    0.142    0.392 

Lambda     K      H
   0.267   0.0436    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,154,049,853
Number of Sequences: 13984884
Number of extensions: 782883347
Number of successful extensions: 2474577
Number of sequences better than 10.0: 7154
Number of HSP's better than 10.0 without gapping: 9802
Number of HSP's successfully gapped in prelim test: 1752
Number of HSP's that attempted gapping in prelim test: 2376200
Number of HSP's gapped (non-prelim): 19419
length of query: 1033
length of database: 4,792,584,752
effective HSP length: 150
effective length of query: 883
effective length of database: 2,694,852,152
effective search space: 2379554450216
effective search space used: 2379554450216
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 87 (38.0 bits)